Protein Accession Description GO Terms NbS00038998g0006.1 protein AED:0.00 eAED:0.00 QI:287|1|1|1|0.33|0.25|4|248|106; (*GB) gi|224053739|ref|XP_002297955.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=4e-63) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=3e-64) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc08g008520.2.1 (e_value=6e-75) genomic_reference:SL2.40ch08 gene_region:2920289-2922665 transcript_region:SL2.40ch08:2920289..2922665- go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00038998g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|225426623|ref|XP_002280836.1| (e_value=1e-153) PREDICTED: 2-keto-3-deoxy-L-rhamnonate aldolase-like [Vitis vinifera];; (*SWP) sp|B1LLJ9|RHMA_ECOSM (e_value=8e-46) 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rhmA PE=3 SV=1;; (*TAIR) AT4G10750.1 (e_value=1e-146) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr4:6618724-6619800 FORWARD LENGTH=358;; (*ITAG) Solyc08g008530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:2926171-2927226 transcript_region:SL2.40ch08:2926171..2927226- go_terms:GO:0006725,GO:0003824 functional_description:"Aldolase (AHRD V1 ***- D7JQJ4_ECOLX); contains Interpro domain(s) IPR005000 HpcH/HpaI aldolase "; GO:0006725,GO:0003824 NbS00035817g0005.1 protein AED:0.42 eAED:0.49 QI:0|0.5|0|1|0|0.33|3|0|77; (*GB) gi|377648362|gb|AFB70985.1| (e_value=2e-21) geraniol 10-hydroxylase, partial [Mitragyna speciosa];; (*SWP) sp|O64635|C76C4_ARATH (e_value=2e-18) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=1e-19) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g090300.2.1 (e_value=1e-26) genomic_reference:SL2.40ch02 gene_region:46462377-46464211 transcript_region:SL2.40ch02:46462377..46464211+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00035817g0004.1 protein AED:0.29 eAED:0.33 QI:44|0|0|1|0|0|2|0|209; (*GB) gi|17065916|emb|CAC80883.1| (e_value=4e-72) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O23976|C76B1_HELTU (e_value=4e-57) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT3G52970.1 (e_value=3e-33) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc02g090290.2.1 (e_value=1e-80) genomic_reference:SL2.40ch02 gene_region:46456616-46458804 transcript_region:SL2.40ch02:46456616..46458804+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001776g0008.1 protein AED:0.24 eAED:0.24 QI:0|0|0.25|1|0.66|0.5|4|17|253; (*GB) gi|356511085|ref|XP_003524260.1| (e_value=2e-81) PREDICTED: lipase 3-like [Glycine max];; (*TAIR) AT5G09430.1 (e_value=2e-70) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311;; (*ITAG) Solyc11g009000.1.1 (e_value=2e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3151023-3152011 transcript_region:SL2.40ch11:3151023..3152011+ functional_description:"Carboxylesterase bioH (AHRD V1 *--- BIOH_TOLAT); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00020151g0019.1 protein AED:0.12 eAED:0.12 QI:213|0.89|0.85|1|0.89|0.95|20|906|850; (*GB) gi|297738709|emb|CBI27954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P45181|PQQL_HAEIN (e_value=8e-59) Probable zinc protease pqqL OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pqqL PE=3 SV=1;; (*TAIR) AT5G56730.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) protein | chr5:22946906-22952576 REVERSE LENGTH=956;; (*ITAG) Solyc12g008710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2074159-2086393 transcript_region:SL2.40ch12:2074159..2086393+ go_terms:GO:0006508,GO:0046872 functional_description:"Peptidase M16 family protein (AHRD V1 ***- D7MM64_ARALY); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00020151g0004.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|0|0|2|264|105; (*GB) gi|1173027|sp|P46290.1|RL31_NICGU (e_value=8e-43) RecName: Full=60S ribosomal protein L31;; (*SWP) sp|P46290|RL31_NICGU (e_value=2e-44) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT5G56710.1 (e_value=4e-42) | Symbols: | Ribosomal protein L31e family protein | chr5:22944003-22944767 REVERSE LENGTH=119;; (*ITAG) Solyc12g008720.1.1 (e_value=2e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2087594-2089246 transcript_region:SL2.40ch12:2087594..2089246+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00053272g0004.1 protein AED:0.29 eAED:0.21 QI:0|1|0.4|1|0.75|0.8|5|318|264; (*GB) gi|255572963|ref|XP_002527412.1| (e_value=2e-121) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q5QMN3|RH20_ORYSJ (e_value=2e-120) DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2;; (*TAIR) AT1G55150.1 (e_value=2e-115) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501;; (*ITAG) Solyc12g044860.1.1 (e_value=5e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45650517-45657385 transcript_region:SL2.40ch12:45650517..45657385- go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00008062g0106.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0|0.5|4|346|426 NbS00008062g0107.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|0.75|0.6|5|0|215 NbS00051602g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.42|0.12|1|0.42|0.5|8|0|737; (*GB) gi|331703946|gb|AED89984.1| (e_value=0.0) PSL1a [Solanum chacoense x Solanum tuberosum];; (*TAIR) AT1G34355.1 (e_value=5e-75) | Symbols: ATPS1, PS1 | forkhead-associated (FHA) domain-containing protein | chr1:12536497-12541730 FORWARD LENGTH=1477;; (*ITAG) Solyc11g017130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7921382-7925320 transcript_region:SL2.40ch11:7921382..7925320+ functional_description:"Forkhead-associated domain-containing protein (AHRD V1 *-*- D7KK60_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00051602g0005.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0|0|2|0|450; (*GB) gi|225460694|ref|XP_002270196.1| (e_value=0.0) PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C8N5|STOP1_ARATH (e_value=2e-158) Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1;; (*TAIR) AT1G34370.1 (e_value=1e-159) | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12551002-12552501 FORWARD LENGTH=499;; (*ITAG) Solyc11g017140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7925834-7927291 transcript_region:SL2.40ch11:7925834..7927291- go_terms:GO:0005622 functional_description:"C2-H2 zinc finger protein (AHRD V1 ***- B0YR09_SOYBN); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbC23946648g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|359474997|ref|XP_002278409.2| (e_value=3e-40) PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera];; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=3e-27) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=2e-28) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=6e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00013573g0004.1 protein AED:0.11 eAED:0.11 QI:119|1|1|1|0.75|0.6|5|130|162; (*GB) gi|225430535|ref|XP_002285577.1| (e_value=4e-75) PREDICTED: uncharacterized protein LOC100264643 [Vitis vinifera];; (*TAIR) AT2G24970.1 (e_value=3e-59) | Symbols: | unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:10620215-10621250 REVERSE LENGTH=152;; (*ITAG) Solyc08g006630.2.1 (e_value=7e-108) genomic_reference:SL2.40ch08 gene_region:1220828-1224838 transcript_region:SL2.40ch08:1220828..1224838- functional_description:"Spindle and kinetochore-associated protein 2 (AHRD V1 ***- SKA2_BOVIN)"; NbS00013573g0012.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.6|0.9|0.77|0.9|10|0|606; (*GB) gi|75173454|sp|Q9FZL3.1|MGDG_TOBAC (e_value=0.0) RecName: Full=Probable monogalactosyldiacylglycerol synthase, chloroplastic; Short=NtMGD1; AltName: Full=MGDG synthase type A; Flags: Precursor;; (*SWP) sp|Q9FZL3|MGDG_TOBAC (e_value=0.0) Probable monogalactosyldiacylglycerol synthase, chloroplastic OS=Nicotiana tabacum GN=MGD A PE=2 SV=1;; (*TAIR) AT4G31780.2 (e_value=0.0) | Symbols: MGD1, MGDA | monogalactosyl diacylglycerol synthase 1 | chr4:15374222-15376961 FORWARD LENGTH=533;; (*ITAG) Solyc08g006640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1225695-1234599 transcript_region:SL2.40ch08:1225695..1234599- go_terms:GO:0046509 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-* C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0046509 NbS00013573g0008.1 protein AED:0.37 eAED:0.37 QI:136|0.66|0.85|0.85|0.83|0.85|7|438|213; (*GB) gi|224143349|ref|XP_002324924.1| (e_value=4e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GR43|TMM85_XENLA (e_value=2e-21) Transmembrane protein 85 OS=Xenopus laevis GN=tmem85 PE=2 SV=1;; (*TAIR) AT5G10780.1 (e_value=8e-81) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3408422-3409759 FORWARD LENGTH=180;; (*ITAG) Solyc08g006650.2.1 (e_value=2e-106) genomic_reference:SL2.40ch08 gene_region:1236672-1242556 transcript_region:SL2.40ch08:1236672..1242556- functional_description:"Transmembrane protein 85 (AHRD V1 **-- B2W047_PYRTR); contains Interpro domain(s) IPR009445 Protein of unknown function DUF1077 "; NbS00013573g0002.1 protein AED:0.00 eAED:0.00 QI:121|-1|0|1|-1|1|1|0|79 NbS00055881g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|359494887|ref|XP_002265573.2| (e_value=4e-175) PREDICTED: BTB/POZ domain-containing protein At2g24240 [Vitis vinifera];; (*SWP) sp|O65555|Y4094_ARATH (e_value=1e-171) BTB/POZ domain-containing protein At4g30940 OS=Arabidopsis thaliana GN=At4g30940 PE=2 SV=1;; (*TAIR) AT4G30940.1 (e_value=1e-172) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr4:15055149-15056474 FORWARD LENGTH=441;; (*ITAG) Solyc07g005520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:408207-409532 transcript_region:SL2.40ch07:408207..409532- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7LHH7_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00055881g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|150; (*GB) gi|1143824|gb|AAB41479.1| (e_value=3e-44) stigma-specific arabinogalactan-protein precursor [Nicotiana alata]; NbS00025765g0008.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|194|449; (*GB) gi|224071449|ref|XP_002303465.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=6e-165) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=5e-166) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc07g055160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60615374-60618303 transcript_region:SL2.40ch07:60615374..60618303- go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00025765g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|4|0|232; (*GB) gi|359485291|ref|XP_002280878.2| (e_value=3e-113) PREDICTED: 2-aminoethanethiol dioxygenase [Vitis vinifera];; (*SWP) sp|Q6PDY2|AEDO_MOUSE (e_value=7e-23) 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2;; (*TAIR) AT2G42670.2 (e_value=6e-108) | Symbols: | Protein of unknown function (DUF1637) | chr2:17772004-17773700 REVERSE LENGTH=242;; (*ITAG) Solyc07g055150.2.1 (e_value=2e-142) genomic_reference:SL2.40ch07 gene_region:60606381-60611714 transcript_region:SL2.40ch07:60606381..60611714- go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B6T568_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00025765g0007.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.2|1|1|5|0|116 NbS00011419g0029.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.6|1|0.5|0.6|5|422|428; (*GB) gi|359476391|ref|XP_002284536.2| (e_value=4e-157) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera];; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=8e-32) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT4G32600.1 (e_value=1e-141) | Symbols: | RING/U-box superfamily protein | chr4:15724010-15725737 FORWARD LENGTH=453;; (*ITAG) Solyc08g067770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54003474-54009576 transcript_region:SL2.40ch08:54003474..54009576+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011419g0033.1 protein AED:0.14 eAED:0.17 QI:0|0.6|0.33|1|0.6|0.33|6|0|1117; (*GB) gi|225430091|ref|XP_002281873.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267937 [Vitis vinifera];; (*SWP) sp|Q92576|PHF3_HUMAN (e_value=3e-18) PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3;; (*TAIR) AT5G11430.1 (e_value=4e-135) | Symbols: | SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873;; (*ITAG) Solyc08g067790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54030139-54036638 transcript_region:SL2.40ch08:54030139..54036638- go_terms:GO:0005634,GO:0006350 functional_description:"Transcription elongation factor S-II (AHRD V1 *-*- D3PGG1_9MAXI); contains Interpro domain(s) IPR017890 Transcription elongation factor S-IIM "; GO:0005634,GO:0006350 NbS00011419g0030.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.28|0.83|0.71|7|0|329; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-23) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-59) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00011419g0014.1 protein AED:0.23 eAED:0.26 QI:469|0.33|0.42|1|0.83|0.71|7|308|385; (*GB) gi|225430093|ref|XP_002284572.1| (e_value=4e-148) PREDICTED: dnaJ homolog subfamily B member 13 isoform 1 [Vitis vinifera];; (*SWP) sp|Q3MI00|DNJB1_BOVIN (e_value=1e-72) DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3;; (*TAIR) AT2G20560.1 (e_value=3e-123) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc02g077670.2.1 (e_value=3e-118) genomic_reference:SL2.40ch02 gene_region:37137141-37141307 transcript_region:SL2.40ch02:37137141..37141307- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00011419g0009.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|359487291|ref|XP_003633561.1| (e_value=7e-117) PREDICTED: protein FRA10AC1-like [Vitis vinifera];; (*SWP) sp|Q70Z53|F10C1_HUMAN (e_value=2e-58) Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=3;; (*TAIR) AT4G15030.1 (e_value=1e-100) | Symbols: | CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). | chr4:8578989-8581180 FORWARD LENGTH=278;; (*ITAG) Solyc04g074660.1.1 (e_value=1e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58172927-58173772 transcript_region:SL2.40ch04:58172927..58173772+ functional_description:"Fra10ac1 protein (AHRD V1 *--- Q1LZ54_MOUSE); contains Interpro domain(s) IPR019129 Folate-sensitive fragile site protein Fra10Ac1 "; NbS00011419g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|1|1|3|0|192; (*GB) gi|255551120|ref|XP_002516608.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G25540.1 (e_value=1e-29) | Symbols: CID6 | CTC-interacting domain 6 | chr5:8891770-8892362 REVERSE LENGTH=175;; (*ITAG) Solyc08g067810.2.1 (e_value=4e-97) genomic_reference:SL2.40ch08 gene_region:54056525-54058909 transcript_region:SL2.40ch08:54056525..54058909- go_terms:GO:0005515 functional_description:"CID5/IPD1 (AHRD V1 ***- D7M3Q7_ARALY); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; GO:0005515 NbS00011419g0011.1 protein AED:0.84 eAED:0.86 QI:0|0|0|0.66|1|1|3|0|119 NbS00011419g0031.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|0|0|3|0|214; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-18) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011419g0034.1 protein AED:0.08 eAED:0.32 QI:33|0|0|1|0|0|2|0|126; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-12) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc05g018280.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:20329560-20331103 transcript_region:SL2.40ch05:20329560..20331103+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00026302g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|604|171; (*GB) gi|225430575|ref|XP_002263122.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100263835 [Vitis vinifera];; (*TAIR) AT5G57685.1 (e_value=2e-14) | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 | chr5:23366356-23366802 REVERSE LENGTH=148;; (*ITAG) Solyc08g006520.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1130492-1131028 transcript_region:SL2.40ch08:1130492..1131028- functional_description:"GDU1 (AHRD V1 *-*- B6TNE4_MAIZE)"; NbS00028949g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|255639066|gb|ACU19833.1| (e_value=4e-30) unknown [Glycine max];; (*TAIR) AT2G46150.1 (e_value=2e-27) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00028949g0002.1 protein AED:0.21 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|113; (*GB) gi|147845493|emb|CAN82727.1| (e_value=1e-20) hypothetical protein VITISV_040324 [Vitis vinifera];; (*TAIR) AT5G41580.1 (e_value=4e-19) | Symbols: | RING/U-box superfamily protein | chr5:16626563-16630659 REVERSE LENGTH=760;; (*ITAG) Solyc08g008130.2.1 (e_value=5e-42) genomic_reference:SL2.40ch08 gene_region:2595505-2610970 transcript_region:SL2.40ch08:2595505..2610970- go_terms:GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- B0W3U7_CULQU); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0008270 NbS00028949g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|141; (*GB) gi|224072044|ref|XP_002303614.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46150.1 (e_value=2e-12) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=4e-21) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00030527g0003.1 protein AED:0.05 eAED:0.05 QI:311|1|0.5|1|1|1|4|0|576; (*GB) gi|255550992|ref|XP_002516544.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=1e-175) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=1e-176) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g095810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63270717-63276021 transcript_region:SL2.40ch12:63270717..63276021+ go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00000986g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|3|142|323; (*GB) gi|224064017|ref|XP_002301350.1| (e_value=4e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=3e-65) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT3G61250.1 (e_value=9e-124) | Symbols: AtMYB17, MYB17 | myb domain protein 17 | chr3:22671306-22672551 FORWARD LENGTH=299;; (*ITAG) Solyc01g094360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77639294-77641524 transcript_region:SL2.40ch01:77639294..77641524+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000986g0004.1 protein AED:0.13 eAED:0.18 QI:0|0.88|0.8|1|0.88|0.8|10|271|372; (*GB) gi|225454007|ref|XP_002280748.1| (e_value=3e-173) PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera];; (*SWP) sp|Q8GXF0|RA51C_ARATH (e_value=4e-150) DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2;; (*TAIR) AT2G45280.1 (e_value=3e-151) | Symbols: ATRAD51C, RAD51C | RAS associated with diabetes protein 51C | chr2:18670103-18672041 FORWARD LENGTH=363;; (*ITAG) Solyc05g050960.2.1 (e_value=1e-137) genomic_reference:SL2.40ch05 gene_region:60323768-60325084 transcript_region:SL2.40ch05:60323768..60325084+ go_terms:GO:0006259 functional_description:"DNA repair and recombination protein radA (AHRD V1 ***- D0KRU5_SULS9); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0006259 NbS00000986g0010.1 protein AED:0.15 eAED:0.20 QI:0|0.8|0.66|1|1|1|6|417|240; (*GB) gi|225454005|ref|XP_002280713.1| (e_value=3e-101) PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis protein osgepl1 [Vitis vinifera];; (*SWP) sp|Q5NL82|GCP_ZYMMO (e_value=1e-38) Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) GN=gcp PE=3 SV=1;; (*TAIR) AT2G45270.1 (e_value=1e-98) | Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480;; (*ITAG) Solyc05g050940.2.1 (e_value=9e-120) genomic_reference:SL2.40ch05 gene_region:60312326-60319564 transcript_region:SL2.40ch05:60312326..60319564+ go_terms:GO:0005515,GO:0004125 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0005515,GO:0004125 NbS00000986g0012.1 protein AED:0.20 eAED:0.20 QI:239|1|1|1|1|1|5|501|175; (*GB) gi|350536269|ref|NP_001234238.1| (e_value=6e-55) remorin 2 [Solanum lycopersicum];; (*SWP) sp|P93788|REMO_SOLTU (e_value=3e-42) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=1e-43) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc01g094370.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:77641584-77645425 transcript_region:SL2.40ch01:77641584..77645425- go_terms:GO:0003677 functional_description:"Remorin 2 (AHRD V1 ***- Q9XEX9_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00000986g0016.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|112; (*GB) gi|359489773|ref|XP_002273091.2| (e_value=3e-15) PREDICTED: O-glucosyltransferase rumi-like [Vitis vinifera];; (*TAIR) AT2G45830.1 (e_value=3e-12) | Symbols: DTA2 | downstream target of AGL15 2 | chr2:18866324-18868344 FORWARD LENGTH=523;; (*ITAG) Solyc01g094380.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:77653952-77658616 transcript_region:SL2.40ch01:77653952..77658616+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00003534g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|0.25|0.2|5|0|223; (*GB) gi|224077174|ref|XP_002305164.1| (e_value=6e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67080.1 (e_value=2e-78) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc02g063170.2.1 (e_value=4e-104) genomic_reference:SL2.40ch02 gene_region:29819149-29821714 transcript_region:SL2.40ch02:29819149..29821714+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00003534g0005.1 protein AED:0.25 eAED:0.43 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-28) hypothetical protein [Nicotiana tabacum]; NbS00003534g0012.1 protein AED:0.02 eAED:0.02 QI:169|1|1|1|1|1|2|240|1092; (*GB) gi|359482811|ref|XP_002270207.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=5e-174) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=4e-175) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc08g075590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56906117-56909996 transcript_region:SL2.40ch08:56906117..56909996- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00003534g0015.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|1|0|0|3|0|147; (*GB) gi|225452045|ref|XP_002280375.1| (e_value=5e-50) PREDICTED: UDP-N-acetylenolpyruvoylglucosamine reductase [Vitis vinifera];; (*SWP) sp|Q6MAQ1|MURB_PARUW (e_value=2e-27) UDP-N-acetylenolpyruvoylglucosamine reductase OS=Protochlamydia amoebophila (strain UWE25) GN=murB PE=3 SV=1;; (*ITAG) Solyc02g063190.2.1 (e_value=9e-80) genomic_reference:SL2.40ch02 gene_region:29822235-29823190 transcript_region:SL2.40ch02:29822235..29823190- go_terms:GO:0055114,GO:0050660 functional_description:"UDP-N-acetylenolpyruvoylglucosamine reductase (AHRD V1 *-*- D1R942_9CHLA); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0055114,GO:0050660 NbS00003534g0013.1 protein AED:0.25 eAED:0.25 QI:329|0.66|0.75|1|1|1|4|0|332; (*GB) gi|225452055|ref|XP_002283926.1| (e_value=2e-94) PREDICTED: mannose-6-phosphate isomerase [Vitis vinifera];; (*SWP) sp|Q8J093|MPI_PICAD (e_value=9e-51) Mannose-6-phosphate isomerase OS=Pichia angusta (strain ATCC 26012 / NRRL Y-7560 / DL-1) GN=PMI40 PE=3 SV=1;; (*TAIR) AT3G02570.1 (e_value=5e-81) | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomerase, type I | chr3:543463-545478 REVERSE LENGTH=432;; (*ITAG) Solyc02g063220.2.1 (e_value=5e-130) genomic_reference:SL2.40ch02 gene_region:29847338-29852456 transcript_region:SL2.40ch02:29847338..29852456- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 2"; GO:0004476 NbS00003534g0007.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|86; (*GB) gi|296087273|emb|CBI33647.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g063180.2.1 (e_value=3e-27) genomic_reference:SL2.40ch02 gene_region:29821427-29822182 transcript_region:SL2.40ch02:29821427..29822182- go_terms:GO:0055114 functional_description:"UDP-N-acetylenolpyruvoylglucosamine reductase (AHRD V1 ***- D1R942_9CHLA); contains Interpro domain(s) IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal "; GO:0055114 NbS00010452g0018.1 protein AED:0.04 eAED:0.04 QI:119|1|0.75|1|1|1|4|0|401; (*GB) gi|548491|sp|Q05967.1|PGLR_TOBAC (e_value=0.0) RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor;; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=0.0) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G07820.1 (e_value=2e-131) | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391;; (*ITAG) Solyc07g044870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55248946-55251738 transcript_region:SL2.40ch07:55248946..55251738+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00010452g0021.1 protein AED:0.25 eAED:0.25 QI:0|1|0.88|1|1|1|9|0|559; (*GB) gi|548533|sp|P35494.1|PMGI_TOBAC (e_value=0.0) RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; AltName: Full=PGAM-I;; (*SWP) sp|P35494|PMGI_TOBAC (e_value=0.0) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G08590.2 (e_value=0.0) | Symbols: | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr3:2608683-2611237 REVERSE LENGTH=560;; (*ITAG) Solyc07g044840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55217173-55222925 transcript_region:SL2.40ch07:55217173..55222925+ go_terms:GO:0008830,GO:0004619 functional_description:"2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 **** B9S1V6_RICCO); contains Interpro domain(s) IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "; GO:0008830,GO:0004619 NbS00010452g0022.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|0.33|0.75|4|0|581; (*GB) gi|224082598|ref|XP_002306758.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H7D7|WDR26_HUMAN (e_value=5e-104) WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3;; (*TAIR) AT5G08560.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc07g044850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55233263-55244252 transcript_region:SL2.40ch07:55233263..55244252+ go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00010452g0020.1 protein AED:0.01 eAED:0.01 QI:266|1|1|1|0.75|0.6|5|353|268; (*GB) gi|384038827|gb|AFH58004.1| (e_value=0.0) chloroplast PsbP4 precursor [Nicotiana benthamiana];; (*SWP) sp|Q7DM39|PSBP1_TOBAC (e_value=4e-177) Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2;; (*TAIR) AT1G06680.1 (e_value=7e-144) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=1e-161) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00010452g0024.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0.66|0.5|4|0|265; (*GB) gi|297738233|emb|CBI27434.3| (e_value=9e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13570.1 (e_value=7e-13) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=3e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037278g0008.1 protein AED:0.13 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|0|819; (*GB) gi|225457763|ref|XP_002278177.1| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100267803 [Vitis vinifera];; (*SWP) sp|Q6YYC0|C3H55_ORYSJ (e_value=2e-14) Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1;; (*ITAG) Solyc04g064770.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:55030749-55033539 transcript_region:SL2.40ch04:55030749..55033539- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 38 (AHRD V1 *-*- C3H38_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00037278g0005.1 protein AED:0.86 eAED:0.86 QI:0|0|0.5|0.5|1|1|2|30|69 NbS00053776g0004.1 protein AED:0.10 eAED:0.10 QI:693|0.4|0.33|1|0.2|0|6|0|866; (*GB) gi|224131750|ref|XP_002328099.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=4e-179) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT2G27060.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11551288-11554577 FORWARD LENGTH=1020;; (*ITAG) Solyc09g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:752491-757062 transcript_region:SL2.40ch09:752491..757062- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00003021g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0|1|1|1|4|0|366; (*GB) gi|3327247|dbj|BAA31690.1| (e_value=0.0) Ntc16 [Nicotiana tabacum];; (*SWP) sp|O04705|GAO1D_WHEAT (e_value=6e-160) Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1;; (*TAIR) AT4G25420.1 (e_value=5e-157) | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12990982-12992409 REVERSE LENGTH=377;; (*ITAG) Solyc01g093980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77317302-77319319 transcript_region:SL2.40ch01:77317302..77319319+ go_terms:GO:0016491,GO:0055114 functional_description:"Gibberellin 20-oxidase 4 (AHRD V1 ***- B2MWW5_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00046899g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.80|0.81|0.95|1|1|22|0|1023; (*GB) gi|359493759|ref|XP_002279640.2| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera];; (*SWP) sp|Q9M291|SC24C_ARATH (e_value=0.0) Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3;; (*TAIR) AT3G44340.1 (e_value=0.0) | Symbols: CEF | clone eighty-four | chr3:16011923-16019873 REVERSE LENGTH=1096;; (*ITAG) Solyc06g084210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45683639-45698182 transcript_region:SL2.40ch06:45683639..45698182+ go_terms:GO:0005515 functional_description:"Transport protein SEC24 (AHRD V1 ***- C1HAV7_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00046899g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|84; (*GB) gi|356508935|ref|XP_003523208.1| (e_value=4e-50) PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max];; (*SWP) sp|A1XQR9|RUXE_PIG (e_value=9e-36) Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1;; (*TAIR) AT4G30330.1 (e_value=1e-49) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88;; (*ITAG) Solyc03g098470.2.1 (e_value=1e-52) genomic_reference:SL2.40ch03 gene_region:54202388-54206465 transcript_region:SL2.40ch03:54202388..54206465- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein E (AHRD V1 ***- B6SXC3_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00029360g0001.1 protein AED:0.08 eAED:0.11 QI:659|0.5|0.6|1|0.75|0.8|5|0|559; (*GB) gi|255571174|ref|XP_002526537.1| (e_value=0.0) Cucumisin precursor, putative [Ricinus communis];; (*SWP) sp|O64495|SDD1_ARATH (e_value=0.0) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=0.0) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc06g083720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45360229-45363159 transcript_region:SL2.40ch06:45360229..45363159+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6U0R8_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00029360g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.77|1|0.87|0.77|9|0|449; (*GB) gi|359480318|ref|XP_002272650.2| (e_value=3e-90) PREDICTED: uncharacterized protein LOC100249710 [Vitis vinifera];; (*TAIR) AT5G43960.1 (e_value=7e-79) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450;; (*ITAG) Solyc06g083730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45365456-45372773 transcript_region:SL2.40ch06:45365456..45372773+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"RNA binding protein (AHRD V1 ***- B6T5S5_MAIZE); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00029360g0018.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|289; (*GB) gi|297744209|emb|CBI37179.3| (e_value=5e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NM73|CRR3_ARATH (e_value=9e-85) Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1;; (*TAIR) AT1G04520.1 (e_value=7e-86) | Symbols: PDLP2 | plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307;; (*ITAG) Solyc06g083750.2.1 (e_value=8e-127) genomic_reference:SL2.40ch06 gene_region:45375558-45377192 transcript_region:SL2.40ch06:45375558..45377192- go_terms:GO:0005515 functional_description:"Cysteine-rich repeat secretory protein 3 (AHRD V1 ***- CRR3_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0005515 NbS00029360g0017.1 protein AED:0.49 eAED:0.57 QI:0|0|0|0.36|0.5|0.63|11|0|487; (*ITAG) Solyc12g044970.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00033314g0003.1 protein AED:0.00 eAED:0.00 QI:9|1|1|1|0.66|0.5|4|120|273; (*GB) gi|224076910|ref|XP_002305045.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT2G34530.1 (e_value=3e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34540.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14549141-14550217 REVERSE LENGTH=282;; (*ITAG) Solyc02g070420.2.1 (e_value=3e-66) genomic_reference:SL2.40ch02 gene_region:34719261-34721918 transcript_region:SL2.40ch02:34719261..34721918- functional_description:"Binding protein (AHRD V1 *-*- D7LH17_ARALY)"; NbS00033314g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|736; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=8e-123) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=8e-119) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G59780.1 (e_value=1e-61) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906;; (*ITAG) Solyc02g070410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34716709-34719108 transcript_region:SL2.40ch02:34716709..34719108+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00020980g0004.1 protein AED:0.19 eAED:0.19 QI:249|1|1|1|0.8|1|6|436|380; (*GB) gi|225440666|ref|XP_002274657.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=5e-96) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT3G09010.1 (e_value=1e-176) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc10g076760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59044149-59046083 transcript_region:SL2.40ch10:59044149..59046083+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- C6FF64_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00031935g0006.1 protein AED:0.07 eAED:0.07 QI:172|1|0.66|1|1|1|3|0|382; (*GB) gi|225433650|ref|XP_002264734.1| (e_value=2e-167) PREDICTED: uncharacterized protein LOC100261667 [Vitis vinifera];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-42) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT3G25290.2 (e_value=3e-155) | Symbols: | Auxin-responsive family protein | chr3:9208955-9210353 FORWARD LENGTH=393;; (*ITAG) Solyc09g056360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:44441347-44443453 transcript_region:SL2.40ch09:44441347..44443453+ functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00031935g0010.1 protein AED:0.34 eAED:0.35 QI:0|1|0|1|1|1|2|0|124; (*ITAG) Solyc10g049530.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00031935g0009.1 protein AED:0.53 eAED:0.69 QI:0|0|0|0.66|0.5|0.33|3|0|66 NbS00022846g0004.1 protein AED:0.00 eAED:0.00 QI:83|1|1|1|1|1|3|100|312; (*GB) gi|225442233|ref|XP_002278228.1| (e_value=2e-82) PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis vinifera];; (*TAIR) AT3G13940.1 (e_value=3e-51) | Symbols: | DNA binding;DNA-directed RNA polymerases | chr3:4600647-4602412 REVERSE LENGTH=442;; (*ITAG) Solyc06g053330.2.1 (e_value=1e-153) genomic_reference:SL2.40ch06 gene_region:32566171-32572561 transcript_region:SL2.40ch06:32566171..32572561- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase I subunit rpa49 (AHRD V1 *-*- RPA49_DICDI); contains Interpro domain(s) IPR009668 RNA polymerase I associated factor, A49-like "; GO:0005634 NbS00040347g0001.1 protein AED:0.47 eAED:0.47 QI:0|0.5|0|0.66|1|1|3|0|115; (*GB) gi|82623403|gb|ABB87116.1| (e_value=1e-59) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=3e-55) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=2e-56) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=1e-62) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00000192g0017.1 protein AED:0.04 eAED:0.04 QI:207|0.9|1|1|0.9|1|11|389|927; (*GB) gi|255556832|ref|XP_002519449.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q9UNX4|WDR3_HUMAN (e_value=0.0) WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1;; (*TAIR) AT3G21540.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955;; (*ITAG) Solyc10g039190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:20678709-20686367 transcript_region:SL2.40ch10:20678709..20686367+ go_terms:GO:0030515 functional_description:"WD-repeat-containing protein (AHRD V1 **-- A8NX65_COPC7); contains Interpro domain(s) IPR007148 Small-subunit processome, Utp12 "; GO:0030515 NbS00000192g0016.1 protein AED:0.17 eAED:0.17 QI:213|0.82|0.85|0.97|0.76|0.76|47|332|1643; (*GB) gi|297739996|emb|CBI30178.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54F23|HTR7A_DICDI (e_value=2e-112) HEAT repeat-containing protein 7A homolog OS=Dictyostelium discoideum GN=heatr7a PE=4 SV=1;; (*TAIR) AT2G36810.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:15425739-15439462 REVERSE LENGTH=1716;; (*ITAG) Solyc09g008490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1945871-1983208 transcript_region:SL2.40ch09:1945871..1983208+ go_terms:GO:0005488 functional_description:"HEAT repeat family protein expressed (AHRD V1 *-*- Q10RT3_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00000192g0018.1 protein AED:0.26 eAED:0.26 QI:48|0.75|0.8|1|0.75|0.6|5|309|168; (*GB) gi|225427258|ref|XP_002281131.1| (e_value=4e-78) PREDICTED: ferredoxin-1 [Vitis vinifera];; (*SWP) sp|P08451|FER2_SYNP6 (e_value=6e-22) Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2;; (*TAIR) AT1G32550.1 (e_value=2e-68) | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily protein | chr1:11771969-11774117 REVERSE LENGTH=181;; (*ITAG) Solyc08g077050.2.1 (e_value=5e-89) genomic_reference:SL2.40ch08 gene_region:58154723-58159786 transcript_region:SL2.40ch08:58154723..58159786+ go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin family protein (AHRD V1 ***- D7KHL5_ARALY); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00026298g0006.1 protein AED:0.16 eAED:0.16 QI:254|1|1|1|0.91|0.84|13|341|392; (*GB) gi|193290684|gb|ACF17650.1| (e_value=0.0) putative enoyl-acyl-carrier-protein reductase [Capsicum annuum];; (*SWP) sp|P80030|FABI_BRANA (e_value=5e-179) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2;; (*TAIR) AT2G05990.2 (e_value=1e-178) | Symbols: MOD1, ENR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390;; (*ITAG) Solyc10g078740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59792276-59795246 transcript_region:SL2.40ch10:59792276..59795246- go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl reductase (AHRD V1 ***- P93062_BRANA); contains Interpro domain(s) IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) "; GO:0008152,GO:0055114 NbS00026298g0007.1 protein AED:0.08 eAED:0.08 QI:284|0.66|0.85|1|0.83|0.71|7|108|381; (*GB) gi|225441421|ref|XP_002279026.1| (e_value=1e-115) PREDICTED: non-structural maintenance of chromosome element 4 [Vitis vinifera];; (*TAIR) AT1G51130.1 (e_value=2e-75) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc10g078730.1.1 (e_value=1e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59788055-59791278 transcript_region:SL2.40ch10:59788055..59791278+ functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 **-- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00040589g0009.1 protein AED:0.02 eAED:0.06 QI:0|0.5|0|1|0.5|0|3|0|1043; (*GB) gi|225456159|ref|XP_002278561.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g074000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57617787-57621291 transcript_region:SL2.40ch04:57617787..57621291- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00040589g0010.1 protein AED:0.34 eAED:0.43 QI:0|0|0|0.8|0.25|0.2|5|0|199 NbS00006891g0016.1 protein AED:0.19 eAED:0.24 QI:580|0.66|0.5|0.8|0.55|0.5|10|0|265; (*GB) gi|225462291|ref|XP_002265244.1| (e_value=1e-131) PREDICTED: ALA-interacting subunit 3 [Vitis vinifera];; (*SWP) sp|Q8L8W0|ALIS5_ARATH (e_value=3e-129) ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1;; (*TAIR) AT1G79450.1 (e_value=2e-130) | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:29887831-29889904 FORWARD LENGTH=350;; (*ITAG) Solyc05g054800.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63771846-63772898 transcript_region:SL2.40ch05:63771846..63772898- go_terms:GO:0005515 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515 NbS00006891g0017.1 protein AED:0.23 eAED:0.27 QI:345|0.57|0.75|1|0.57|0.62|8|469|411; (*GB) gi|359494626|ref|XP_002265047.2| (e_value=0.0) PREDICTED: ribosomal RNA large subunit methyltransferase I-like [Vitis vinifera];; (*SWP) sp|C4L7I7|RLMI_TOLAT (e_value=1e-47) Ribosomal RNA large subunit methyltransferase I OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=rlmI PE=3 SV=1;; (*TAIR) AT1G54310.2 (e_value=1e-174) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:20273567-20275449 FORWARD LENGTH=454; NbS00027448g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.66|1|0|0|3|0|330; (*GB) gi|296089966|emb|CBI39785.3| (e_value=1e-145) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUU2|RIE1_ARATH (e_value=4e-22) E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1;; (*TAIR) AT5G55970.2 (e_value=7e-126) | Symbols: | RING/U-box superfamily protein | chr5:22668019-22669312 FORWARD LENGTH=343;; (*ITAG) Solyc07g065810.2.1 (e_value=1e-164) genomic_reference:SL2.40ch07 gene_region:64647606-64649101 transcript_region:SL2.40ch07:64647606..64649101+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018673g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.28|0.71|1|1|7|0|426; (*GB) gi|224138796|ref|XP_002326692.1| (e_value=1e-126) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17140.3 (e_value=4e-124) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00013523g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.33|3|542|145; (*GB) gi|226507705|ref|NP_001148940.1| (e_value=9e-92) G10-like protein [Zea mays];; (*SWP) sp|Q94DE2|BD31A_ORYSJ (e_value=1e-91) Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica GN=Os01g0857700 PE=2 SV=1;; (*TAIR) AT4G21110.1 (e_value=2e-93) | Symbols: | G10 family protein | chr4:11267673-11268774 FORWARD LENGTH=145;; (*ITAG) Solyc09g009300.2.1 (e_value=2e-93) genomic_reference:SL2.40ch09 gene_region:2673382-2677553 transcript_region:SL2.40ch09:2673382..2677553- go_terms:GO:0001965 functional_description:"BUD31 homolog (AHRD V1 **-- C1C3X0_RANCA); contains Interpro domain(s) IPR001748 G10 protein "; GO:0001965 NbS00013523g0009.1 protein AED:0.10 eAED:0.11 QI:24|0.84|0.65|1|0.84|0.75|20|0|1476; (*GB) gi|97180275|sp|Q2PCF1.1|PDR2_NICPL (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 2; AltName: Full=NpPDR2;; (*SWP) sp|Q2PCF1|PDR2_NICPL (e_value=0.0) Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1;; (*TAIR) AT2G36380.1 (e_value=0.0) | Symbols: PDR6, ATPDR6 | pleiotropic drug resistance 6 | chr2:15257583-15263627 FORWARD LENGTH=1453;; (*ITAG) Solyc11g067000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49852009-49861096 transcript_region:SL2.40ch11:49852009..49861096- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00013523g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|1079; (*GB) gi|45935149|gb|AAS79607.1| (e_value=0.0) hypothetical protein [Ipomoea trifida];; (*TAIR) AT3G22430.1 (e_value=2e-38) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | chr3:7953455-7957605 FORWARD LENGTH=510;; (*ITAG) Solyc11g066990.1.1 (e_value=3e-96) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49847837-49848794 transcript_region:SL2.40ch11:49847837..49848794+ functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 **-- SGS3_ARATH)"; NbC24092916g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|0|0|2|0|77; (*GB) gi|357471415|ref|XP_003605992.1| (e_value=6e-46) Serine/threonine protein phosphatase [Medicago truncatula];; (*SWP) sp|Q2QM47|BSL2_ORYSJ (e_value=1e-45) Serine/threonine-protein phosphatase BSL2 homolog OS=Oryza sativa subsp. japonica GN=BSL2 PE=2 SV=2;; (*TAIR) AT2G27210.2 (e_value=1e-46) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1001;; (*ITAG) Solyc01g009280.2.1 (e_value=4e-47) genomic_reference:SL2.40ch01 gene_region:3302809-3320461 transcript_region:SL2.40ch01:3302809..3320461- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** D7LGU6_ARALY); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00003532g0003.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|582; (*GB) gi|225453600|ref|XP_002264721.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 1-like [Vitis vinifera];; (*SWP) sp|Q9MAM3|KCS1_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1;; (*TAIR) AT1G01120.1 (e_value=0.0) | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57392-58978 REVERSE LENGTH=528;; (*ITAG) Solyc10g009240.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3233896-3236001 transcript_region:SL2.40ch10:3233896..3236001- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00033943g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.8|1|0.5|0.6|5|299|186; (*GB) gi|81076822|gb|ABB55398.1| (e_value=1e-65) 40S ribosomal protein S10-like [Solanum tuberosum];; (*SWP) sp|Q9LTF2|RS103_ARATH (e_value=8e-59) 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2;; (*TAIR) AT4G25740.2 (e_value=6e-60) | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr4:13107488-13108751 REVERSE LENGTH=149;; (*ITAG) Solyc01g099670.2.1 (e_value=2e-68) genomic_reference:SL2.40ch01 gene_region:81603519-81605647 transcript_region:SL2.40ch01:81603519..81605647- functional_description:"40S ribosomal protein S10-like (AHRD V1 ***- Q2XTB2_SOLTU); contains Interpro domain(s) IPR005326 Plectin/S10, N-terminal "; NbS00033943g0015.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|226; (*GB) gi|298201206|gb|ADI60300.1| (e_value=2e-135) stress-related protein 1 [Capsicum annuum];; (*SWP) sp|Q9SW70|SRP_VITRI (e_value=3e-87) Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1;; (*TAIR) AT3G05500.1 (e_value=9e-88) | Symbols: | Rubber elongation factor protein (REF) | chr3:1593540-1594802 FORWARD LENGTH=246;; (*ITAG) Solyc01g099680.2.1 (e_value=2e-136) genomic_reference:SL2.40ch01 gene_region:81609802-81612012 transcript_region:SL2.40ch01:81609802..81612012+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00033943g0005.1 protein AED:0.10 eAED:0.10 QI:174|0.75|0.55|1|1|1|9|0|726; (*GB) gi|379054910|gb|AFC88846.1| (e_value=0.0) putative luminal binding protein 7B4, partial [Tetragonia tetragonioides];; (*SWP) sp|Q9LKR3|HSP7K_ARATH (e_value=0.0) Heat shock 70 kDa protein 11 OS=Arabidopsis thaliana GN=HSP70-11 PE=1 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc01g099660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81599813-81602924 transcript_region:SL2.40ch01:81599813..81602924+ go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00014321g0001.1 protein AED:0.00 eAED:0.00 QI:205|1|1|1|0.5|0.33|3|374|69; (*GB) gi|282848240|gb|ADB02901.1| (e_value=3e-29) protein transport protein SEC61 subunit gamma [Jatropha curcas];; (*SWP) sp|Q9SW34|S61G1_ARATH (e_value=1e-30) Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1;; (*TAIR) AT5G50460.1 (e_value=1e-31) | Symbols: | secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69; NbS00000606g0021.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|0.5|0.33|3|0|96; (*GB) gi|75326539|sp|Q75VR1.1|TCP1A_TOBAC (e_value=2e-45) RecName: Full=Two pore calcium channel protein 1A; AltName: Full=Voltage-dependent calcium channel protein TPC1A; Short=NtTPC1A;; (*SWP) sp|Q75VR1|TPC1A_TOBAC (e_value=7e-47) Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=1e-36) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=9e-44) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00000606g0022.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|129; (*GB) gi|75326538|sp|Q75VR0.1|TPC1B_TOBAC (e_value=5e-71) RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B;; (*SWP) sp|Q75VR0|TPC1B_TOBAC (e_value=2e-72) Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=4e-45) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=6e-66) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00000606g0020.1 protein AED:0.43 eAED:0.45 QI:0|0.66|0.57|1|0.16|0.14|7|405|188; (*GB) gi|75326538|sp|Q75VR0.1|TPC1B_TOBAC (e_value=3e-91) RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B;; (*SWP) sp|Q75VR0|TPC1B_TOBAC (e_value=9e-93) Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=2e-65) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=1e-86) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00000606g0019.1 protein AED:0.46 eAED:0.47 QI:0|0.83|0.71|1|0.83|0.85|7|0|177; (*GB) gi|75326539|sp|Q75VR1.1|TCP1A_TOBAC (e_value=2e-116) RecName: Full=Two pore calcium channel protein 1A; AltName: Full=Voltage-dependent calcium channel protein TPC1A; Short=NtTPC1A;; (*SWP) sp|Q75VR1|TPC1A_TOBAC (e_value=6e-118) Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=2e-77) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=9e-112) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00000606g0023.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|3|0|916; (*GB) gi|255553749|ref|XP_002517915.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9ZT82|CALSC_ARATH (e_value=0.0) Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1;; (*TAIR) AT4G03550.1 (e_value=0.0) | Symbols: ATGSL05, GSL05, ATGSL5, PMR4, GSL5 | glucan synthase-like 5 | chr4:1573513-1579195 FORWARD LENGTH=1780;; (*ITAG) Solyc07g053980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59711693-59718531 transcript_region:SL2.40ch07:59711693..59718531- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00000606g0024.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0|0|2|0|911; (*GB) gi|224121704|ref|XP_002330632.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZT82|CALSC_ARATH (e_value=0.0) Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1;; (*TAIR) AT4G03550.1 (e_value=0.0) | Symbols: ATGSL05, GSL05, ATGSL5, PMR4, GSL5 | glucan synthase-like 5 | chr4:1573513-1579195 FORWARD LENGTH=1780;; (*ITAG) Solyc07g053980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59711693-59718531 transcript_region:SL2.40ch07:59711693..59718531- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00011099g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.84|0.78|1|0.61|0.5|14|361|733; (*GB) gi|225440496|ref|XP_002273930.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase atg-1 [Vitis vinifera];; (*SWP) sp|Q52EB3|ATG1_MAGO7 (e_value=5e-64) Serine/threonine-protein kinase ATG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG1 PE=1 SV=1;; (*TAIR) AT2G37840.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:15851978-15856047 FORWARD LENGTH=733;; (*ITAG) Solyc09g011320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4659704-4666597 transcript_region:SL2.40ch09:4659704..4666597+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011099g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|513; (*GB) gi|359482077|ref|XP_003632708.1| (e_value=0.0) PREDICTED: putative receptor protein kinase ZmPK1-like [Vitis vinifera];; (*SWP) sp|P17801|KPRO_MAIZE (e_value=7e-131) Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2;; (*TAIR) AT1G34300.1 (e_value=1e-67) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc09g011330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4671126-4673537 transcript_region:SL2.40ch09:4671126..4673537+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor protein kinase-like (AHRD V1 **** Q5QLM8_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00011982g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0.5|0.5|1|0.5|2|283|102; (*GB) gi|147780458|emb|CAN60010.1| (e_value=1e-17) hypothetical protein VITISV_018635 [Vitis vinifera]; NbS00011982g0008.1 protein AED:0.08 eAED:0.08 QI:177|1|1|1|0.66|0.75|4|0|476; (*GB) gi|225445549|ref|XP_002282244.1| (e_value=5e-112) PREDICTED: uncharacterized protein LOC100250879 [Vitis vinifera];; (*TAIR) AT3G24150.1 (e_value=7e-79) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:8724273-8725586 REVERSE LENGTH=343;; (*ITAG) Solyc07g008100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2816985-2820874 transcript_region:SL2.40ch07:2816985..2820874+ functional_description:"Genomic DNA chromosome 3 P1 clone MUJ8 (AHRD V1 *-*- Q9LRN2_ARATH)"; NbS00019145g0016.1 protein AED:0.11 eAED:0.18 QI:0|0.33|0.5|1|0.33|0.5|4|485|373; (*GB) gi|225433389|ref|XP_002282998.1| (e_value=1e-89) PREDICTED: xylosyltransferase 1 [Vitis vinifera];; (*TAIR) AT3G24040.1 (e_value=2e-73) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:8681118-8683211 REVERSE LENGTH=417;; (*ITAG) Solyc05g053490.2.1 (e_value=2e-149) genomic_reference:SL2.40ch05 gene_region:62715754-62721624 transcript_region:SL2.40ch05:62715754..62721624+ go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00019145g0009.1 protein AED:0.20 eAED:0.20 QI:118|0.77|0.78|1|1|1|19|310|609; (*GB) gi|255554262|ref|XP_002518171.1| (e_value=0.0) chaperonin-60kD, ch60, putative [Ricinus communis];; (*SWP) sp|P29197|CH60A_ARATH (e_value=0.0) Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2;; (*TAIR) AT3G23990.1 (e_value=0.0) | Symbols: HSP60, HSP60-3B | heat shock protein 60 | chr3:8669013-8672278 FORWARD LENGTH=577;; (*ITAG) Solyc05g053470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62706122-62712174 transcript_region:SL2.40ch05:62706122..62712174+ go_terms:GO:0005524,GO:0005507 functional_description:"chaperonin (AHRD V1 ***- D2LE93_RHOVA); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0005524,GO:0005507 NbS00019145g0006.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|104; (*GB) gi|297831264|ref|XP_002883514.1| (e_value=3e-17) hypothetical protein ARALYDRAFT_898993 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G13560.1 (e_value=6e-14) | Symbols: UNE15 | Late embryogenesis abundant protein (LEA) family protein | chr4:7879764-7880311 REVERSE LENGTH=109;; (*ITAG) Solyc05g053450.2.1 (e_value=5e-42) genomic_reference:SL2.40ch05 gene_region:62666830-62668268 transcript_region:SL2.40ch05:62666830..62668268+ functional_description:"Late embryogenesis abundant protein 1 (AHRD V1 *-*- LEA1_CICAR)"; NbS00019145g0017.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|0.75|0.33|0.25|4|0|322; (*GB) gi|255554254|ref|XP_002518167.1| (e_value=3e-117) Hydroxyethylthiazole kinase, putative [Ricinus communis];; (*SWP) sp|Q6AQZ6|THIM_DESPS (e_value=1e-57) Hydroxyethylthiazole kinase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=thiM PE=3 SV=2;; (*TAIR) AT3G24030.1 (e_value=1e-109) | Symbols: | hydroxyethylthiazole kinase family protein | chr3:8679862-8680812 REVERSE LENGTH=276;; (*ITAG) Solyc05g053480.2.1 (e_value=2e-160) genomic_reference:SL2.40ch05 gene_region:62712711-62714953 transcript_region:SL2.40ch05:62712711..62714953- go_terms:GO:0008972 functional_description:"Hydroxyethylthiazole kinase family protein (AHRD V1 **** D7L4A5_ARALY); contains Interpro domain(s) IPR011144 Hydroxyethylthiazole kinase, monofunctional "; GO:0008972 NbS00046935g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0|2|0|91; (*GB) gi|217071594|gb|ACJ84157.1| (e_value=8e-59) unknown [Medicago truncatula];; (*SWP) sp|Q2KMM2|TPPC1_RAT (e_value=1e-18) Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1;; (*TAIR) AT1G51160.2 (e_value=4e-60) | Symbols: | SNARE-like superfamily protein | chr1:18950057-18951560 FORWARD LENGTH=169;; (*ITAG) Solyc03g007680.2.1 (e_value=3e-63) genomic_reference:SL2.40ch03 gene_region:2206118-2210847 transcript_region:SL2.40ch03:2206118..2210847+ go_terms:GO:0005515,GO:0017112 functional_description:"Trafficking protein particle complex subunit 4 (AHRD V1 ***- B2WD65_PYRTR); contains Interpro domain(s) IPR007233 Sybindin-like protein "; GO:0005515,GO:0017112 NbS00050636g0005.1 protein AED:0.09 eAED:0.11 QI:26|0.6|0.45|1|0.5|0.36|11|0|555; (*GB) gi|297739295|emb|CBI28946.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWU4|ATML1_ARATH (e_value=0.0) Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1;; (*TAIR) AT4G21750.2 (e_value=0.0) | Symbols: ATML1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:11556965-11560243 FORWARD LENGTH=762;; (*ITAG) Solyc10g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:239692-245015 transcript_region:SL2.40ch10:239692..245015- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00001001g0001.1 protein AED:0.12 eAED:0.13 QI:0|1|0.66|1|0|0.33|3|458|615; (*GB) gi|242063912|ref|XP_002453245.1| (e_value=0.0) hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=7e-154) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=6e-155) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc01g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73016728-73019108 transcript_region:SL2.40ch01:73016728..73019108- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00001001g0020.1 protein AED:0.12 eAED:0.22 QI:0|0|0|1|0|0.33|3|0|381; (*GB) gi|224146126|ref|XP_002325889.1| (e_value=7e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GX29|SKI25_ARATH (e_value=4e-57) F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1;; (*TAIR) AT1G31350.1 (e_value=3e-58) | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221519-11222706 REVERSE LENGTH=395;; (*ITAG) Solyc01g081210.2.1 (e_value=4e-156) genomic_reference:SL2.40ch01 gene_region:73006448-73008180 transcript_region:SL2.40ch01:73006448..73008180- functional_description:"F-box/kelch-repeat protein At1g22040 (AHRD V1 ***- FBK8_ARATH); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00001001g0002.1 protein AED:0.44 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|128; (*ITAG) Solyc10g024480.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:14614042-14614491 transcript_region:SL2.40ch10:14614042..14614491- functional_description:"Unknown Protein (AHRD V1)"; NbS00001001g0017.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|229|250; (*GB) gi|225436164|ref|XP_002264054.1| (e_value=5e-94) PREDICTED: glutathione transferase GST 23 [Vitis vinifera];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=2e-55) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=9e-47) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc01g081270.2.1 (e_value=1e-111) genomic_reference:SL2.40ch01 gene_region:73027037-73028378 transcript_region:SL2.40ch01:73027037..73028378+ functional_description:"Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00001001g0009.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.14|1|1|7|0|400; (*GB) gi|113205399|gb|AAU90302.2| (e_value=8e-14) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=1e-34) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00026455g0006.1 protein AED:0.23 eAED:0.23 QI:4|0.8|0.5|0.83|0.6|0.66|6|0|753; (*GB) gi|359490801|ref|XP_002277892.2| (e_value=0.0) PREDICTED: dipeptidyl peptidase 8-like [Vitis vinifera];; (*SWP) sp|Q8BVG4|DPP9_MOUSE (e_value=3e-76) Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9 PE=2 SV=2;; (*TAIR) AT5G24260.1 (e_value=0.0) | Symbols: | prolyl oligopeptidase family protein | chr5:8234865-8237810 REVERSE LENGTH=746;; (*ITAG) Solyc03g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46702262-46708474 transcript_region:SL2.40ch03:46702262..46708474+ go_terms:GO:0008239 functional_description:"Dipeptidyl peptidase IV-like protein (AHRD V1 **** Q9FNF6_ARATH); contains Interpro domain(s) IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal "; GO:0008239 NbS00021634g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|296278604|gb|ADH04266.1| (e_value=1e-59) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=7e-19) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=6e-20) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090320.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:75741119-75741760 transcript_region:SL2.40ch01:75741119..75741760- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00023937g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|131167|sp|P29302.1|PSAD_NICSY (e_value=6e-131) RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor;; (*SWP) sp|P29302|PSAD_NICSY (e_value=2e-132) Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1;; (*TAIR) AT1G03130.1 (e_value=4e-102) | Symbols: PSAD-2 | photosystem I subunit D-2 | chr1:753528-754142 REVERSE LENGTH=204;; (*ITAG) Solyc06g054260.1.1 (e_value=1e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33565231-33565857 transcript_region:SL2.40ch06:33565231..33565857- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit II (AHRD V1 ***- B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD "; GO:0009538 NbS00027669g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|93; (*GB) gi|225439854|ref|XP_002278074.1| (e_value=4e-22) PREDICTED: uncharacterized protein LOC100256772 [Vitis vinifera];; (*TAIR) AT5G02580.1 (e_value=3e-19) | Symbols: | Plant protein 1589 of unknown function | chr5:579965-580454 FORWARD LENGTH=91;; (*ITAG) Solyc09g005730.2.1 (e_value=2e-30) genomic_reference:SL2.40ch09 gene_region:504126-505529 transcript_region:SL2.40ch09:504126..505529+ functional_description:"Plant-specific domain TIGR01589 family protein (AHRD V1 ***- B4FFL2_MAIZE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00027669g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|339; (*GB) gi|225439850|ref|XP_002277967.1| (e_value=4e-110) PREDICTED: uncharacterized protein LOC100267054 [Vitis vinifera];; (*TAIR) AT2G37400.1 (e_value=6e-99) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15696365-15697366 REVERSE LENGTH=333;; (*ITAG) Solyc09g005740.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:508767-509831 transcript_region:SL2.40ch09:508767..509831+ go_terms:GO:0005488 functional_description:"Chloroplast lumen common family protein (AHRD V1 *--- D7LUJ6_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00031321g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|20149052|gb|AAM12781.1| (e_value=1e-56) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=6e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=3e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00031321g0004.1 protein AED:0.38 eAED:0.57 QI:292|0|0.5|1|1|1|2|0|90 NbS00022620g0011.1 protein AED:0.01 eAED:0.02 QI:6|0.5|0|1|1|1|3|0|420; (*GB) gi|255574907|ref|XP_002528360.1| (e_value=1e-80) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G04500.1 (e_value=3e-58) | Symbols: | CCT motif family protein | chr1:1221757-1224235 REVERSE LENGTH=386;; (*ITAG) Solyc09g090650.2.1 (e_value=2e-138) genomic_reference:SL2.40ch09 gene_region:65452268-65455445 transcript_region:SL2.40ch09:65452268..65455445- functional_description:"Zinc finger protein CONSTANS-LIKE 5 (AHRD V1 *--- COL5_ARATH); contains Interpro domain(s) IPR010402 CCT domain "; NbS00022620g0014.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|2|271|602; (*GB) gi|225433251|ref|XP_002282069.1| (e_value=1e-157) PREDICTED: uncharacterized protein LOC100247804 [Vitis vinifera];; (*TAIR) AT2G33360.1 (e_value=2e-76) | Symbols: | Protein of unknown function (DUF3527) | chr2:14140901-14142870 FORWARD LENGTH=603;; (*ITAG) Solyc09g090640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65437311-65439687 transcript_region:SL2.40ch09:65437311..65439687- functional_description:"Unknown Protein (AHRD V1)"; NbS00022620g0012.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|131; (*ITAG) Solyc05g039970.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00008732g0005.1 protein AED:0.01 eAED:0.01 QI:58|1|1|1|1|1|3|266|183; (*GB) gi|297739296|emb|CBI28947.3| (e_value=7e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G21710.2 (e_value=6e-17) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:7648380-7649533 FORWARD LENGTH=211;; (*ITAG) Solyc07g052460.2.1 (e_value=7e-48) genomic_reference:SL2.40ch07 gene_region:58273857-58275345 transcript_region:SL2.40ch07:58273857..58275345+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 ***- Q9LSZ3_ARATH)"; NbS00049146g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|239|240; (*GB) gi|225438569|ref|XP_002280145.1| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100252506 [Vitis vinifera];; (*TAIR) AT2G21970.1 (e_value=4e-57) | Symbols: SEP2 | stress enhanced protein 2 | chr2:9357188-9357874 REVERSE LENGTH=202;; (*ITAG) Solyc04g053130.2.1 (e_value=5e-103) genomic_reference:SL2.40ch04 gene_region:50873327-50875240 transcript_region:SL2.40ch04:50873327..50875240- go_terms:GO:0016168 functional_description:"LHC-related protein (AHRD V1 **-- D8SUY7_SELML)"; GO:0016168 NbS00015325g0013.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.5|0.83|0.8|0.5|6|1107|325; (*GB) gi|255556480|ref|XP_002519274.1| (e_value=9e-59) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT3G06520.1 (e_value=2e-44) | Symbols: | agenet domain-containing protein | chr3:2020284-2021955 FORWARD LENGTH=466;; (*ITAG) Solyc01g058160.2.1 (e_value=4e-147) genomic_reference:SL2.40ch01 gene_region:58392149-58394695 transcript_region:SL2.40ch01:58392149..58394695+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7L5I9_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00015325g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.5|1|0.44|0.6|10|261|339; (*GB) gi|359477106|ref|XP_003631938.1| (e_value=1e-163) PREDICTED: CAS1 domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|P0CM56|CAS1_CRYNJ (e_value=2e-29) Probable O-acetyltransferase CAS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CAS1 PE=3 SV=1;; (*TAIR) AT2G34410.3 (e_value=2e-156) | Symbols: | O-acetyltransferase family protein | chr2:14518719-14522053 FORWARD LENGTH=527;; (*ITAG) Solyc01g058270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:58780420-58787167 transcript_region:SL2.40ch01:58780420..58787167+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00015325g0021.1 protein AED:0.24 eAED:0.24 QI:0|0.88|0.9|1|0.66|0.7|10|0|625; (*GB) gi|350540114|ref|NP_001233879.1| (e_value=0.0) beta-glycosidase-like [Solanum lycopersicum];; (*SWP) sp|Q8L6H7|SFR2_ORYSJ (e_value=0.0) Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1;; (*TAIR) AT3G06510.1 (e_value=0.0) | Symbols: SFR2, ATSFR2 | Glycosyl hydrolase superfamily protein | chr3:2016450-2019533 FORWARD LENGTH=622;; (*ITAG) Solyc01g058140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:58325669-58338108 transcript_region:SL2.40ch01:58325669..58338108+ go_terms:GO:0008422,GO:0080079 functional_description:"Beta-glucosidase A (AHRD V1 *-** B5YCI2_DICT6); contains Interpro domain(s) IPR018120 Glycoside hydrolase, family 1, active site IPR001360 Glycoside hydrolase, family 1 "; GO:0008422,GO:0080079 NbS00039988g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.87|0.55|0.88|1|1|9|0|1087; (*GB) gi|359486781|ref|XP_002278108.2| (e_value=0.0) PREDICTED: pumilio homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9ZW07|PUM1_ARATH (e_value=0.0) Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=2 SV=1;; (*TAIR) AT2G29200.1 (e_value=0.0) | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968;; (*ITAG) Solyc04g011580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3998019-4005142 transcript_region:SL2.40ch04:3998019..4005142- go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00039988g0008.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0.5|0.66|3|0|410; (*GB) gi|225438611|ref|XP_002276585.1| (e_value=4e-82) PREDICTED: DAZ-associated protein 1-like [Vitis vinifera];; (*SWP) sp|Q99020|ROAA_MOUSE (e_value=3e-24) Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus GN=Hnrnpab PE=1 SV=1;; (*TAIR) AT3G56860.5 (e_value=2e-67) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc04g011560.2.1 (e_value=4e-138) genomic_reference:SL2.40ch04 gene_region:3985755-3989214 transcript_region:SL2.40ch04:3985755..3989214- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00022542g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|0.75|0.66|0.75|4|0|249; (*GB) gi|359473277|ref|XP_003631281.1| (e_value=8e-94) PREDICTED: probable receptor-like protein kinase At5g15080-like [Vitis vinifera];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=6e-85) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G28690.3 (e_value=2e-88) | Symbols: | Protein kinase superfamily protein | chr3:10755412-10757494 FORWARD LENGTH=425;; (*ITAG) Solyc05g007050.2.1 (e_value=3e-95) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00022542g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.3|0.36|0.90|0.4|0.27|11|0|529; (*GB) gi|254692066|emb|CBA10127.1| (e_value=7e-141) non-cell-autonomous protein pathway [Nicotiana benthamiana];; (*SWP) sp|Q5EA79|GALM_BOVIN (e_value=3e-56) Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=2e-93) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087780.2.1 (e_value=5e-162) genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00022542g0013.1 protein AED:0.23 eAED:0.23 QI:115|0.5|0.55|1|0.87|0.77|9|0|561; (*GB) gi|15824567|gb|AAL09398.1|AF307095_1 (e_value=0.0) non-cell-autonomous protein pathway2 [Nicotiana tabacum];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=1e-55) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=8e-90) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087810.2.1 (e_value=9e-155) genomic_reference:SL2.40ch02 gene_region:44664838-44667209 transcript_region:SL2.40ch02:44664838..44667209+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00027623g0006.1 protein AED:0.11 eAED:0.11 QI:163|1|0.92|1|0.58|0.76|13|389|496; (*GB) gi|297743390|emb|CBI36257.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O48652|UVR3_ARATH (e_value=0.0) (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2;; (*TAIR) AT3G15620.1 (e_value=0.0) | Symbols: UVR3 | DNA photolyase family protein | chr3:5293475-5296548 REVERSE LENGTH=556;; (*ITAG) Solyc12g042910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43806145-43811395 transcript_region:SL2.40ch12:43806145..43811395- go_terms:GO:0006281 functional_description:"Cryptochrome-like protein 1 (AHRD V1 ***- Q5IFN1_OSTTA); contains Interpro domain(s) IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal "; GO:0006281 NbS00027623g0003.1 protein AED:0.36 eAED:0.53 QI:0|0|0|1|1|1|2|0|76 NbS00027623g0010.1 protein AED:0.23 eAED:0.29 QI:23|0.62|0.33|0.88|1|1|9|0|380; (*GB) gi|7547401|gb|AAB28813.2| (e_value=0.0) cytochrome c1 precursor [Solanum tuberosum];; (*SWP) sp|P25076|CY11_SOLTU (e_value=0.0) Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1;; (*TAIR) AT5G40810.1 (e_value=3e-162) | Symbols: | Cytochrome C1 family | chr5:16340200-16342327 FORWARD LENGTH=307;; (*ITAG) Solyc12g042920.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43815509-43821918 transcript_region:SL2.40ch12:43815509..43821918+ go_terms:GO:0020037 functional_description:"Cytochrome c1 (AHRD V1 ***- Q9FKS5_ARATH); contains Interpro domain(s) IPR002326 Cytochrome c1 "; GO:0020037 NbS00010014g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.7|0.63|0.90|0.8|0.81|11|0|396; (*GB) gi|302142032|emb|CBI19235.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9DC22|DCAF6_MOUSE (e_value=1e-11) DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1;; (*TAIR) AT5G10940.2 (e_value=6e-174) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3448890-3454127 REVERSE LENGTH=754;; (*ITAG) Solyc04g076020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58542824-58562426 transcript_region:SL2.40ch04:58542824..58562426- go_terms:GO:0004857 functional_description:"Wd and tetratricopeptide repeat protein (AHRD V1 *--- C5FTG1_NANOT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004857 NbS00010014g0003.1 protein AED:0.47 eAED:0.70 QI:19|0|0.5|1|0|0|2|71|36 NbS00052049g0001.1 protein AED:0.19 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|28874836|emb|CAC84087.1| (e_value=4e-35) ZIK1 protein [Medicago sativa];; (*SWP) sp|Q80XP9|WNK3_MOUSE (e_value=3e-36) Serine/threonine-protein kinase WNK3 OS=Mus musculus GN=Wnk3 PE=2 SV=2;; (*TAIR) AT1G49160.1 (e_value=9e-37) | Symbols: WNK7 | Protein kinase superfamily protein | chr1:18179473-18181851 REVERSE LENGTH=539;; (*ITAG) Solyc10g009060.1.1 (e_value=5e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024241g0004.1 protein AED:0.16 eAED:0.16 QI:84|0.8|0.66|1|1|1|6|211|442; (*GB) gi|356546530|ref|XP_003541679.1| (e_value=2e-94) PREDICTED: GDSL esterase/lipase At1g29670-like [Glycine max];; (*SWP) sp|Q9C7N5|GDL14_ARATH (e_value=4e-78) GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1;; (*TAIR) AT1G29660.1 (e_value=3e-79) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10371955-10373624 FORWARD LENGTH=364;; (*ITAG) Solyc02g071710.2.1 (e_value=6e-143) genomic_reference:SL2.40ch02 gene_region:35660897-35664118 transcript_region:SL2.40ch02:35660897..35664118+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00024241g0007.1 protein AED:0.18 eAED:0.18 QI:32|0.75|0.6|1|0.25|0.4|5|0|323; (*GB) gi|225443389|ref|XP_002266915.1| (e_value=1e-115) PREDICTED: GDSL esterase/lipase At1g29670 [Vitis vinifera];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=7e-98) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=6e-99) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35660897-35664118 transcript_region:SL2.40ch02:35660897..35664118+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00011293g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.93|0.88|1|0.68|0.64|17|377|587; (*GB) gi|255556600|ref|XP_002519334.1| (e_value=0.0) cytosolic purine 5-nucleotidase, putative [Ricinus communis];; (*SWP) sp|Q54XC1|5NTC_DICDI (e_value=5e-59) Cytosolic purine 5'-nucleotidase OS=Dictyostelium discoideum GN=nt5c2 PE=3 SV=1;; (*TAIR) AT5G48960.1 (e_value=0.0) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr5:19849645-19853382 FORWARD LENGTH=642;; (*ITAG) Solyc12g098830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64550311-64560784 transcript_region:SL2.40ch12:64550311..64560784- functional_description:"5&apos-nucleotidase (AHRD V1 ***- A9F2C9_SORC5); contains Interpro domain(s) IPR008380 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "; NbS00025897g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|0.66|3|0|205; (*GB) gi|359478708|ref|XP_002282476.2| (e_value=1e-56) PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera];; (*SWP) sp|Q9M658|MOM1_ARATH (e_value=2e-27) Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1;; (*TAIR) AT1G08060.2 (e_value=2e-28) | Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001;; (*ITAG) Solyc06g010210.2.1 (e_value=6e-113) genomic_reference:SL2.40ch06 gene_region:5404862-5406467 transcript_region:SL2.40ch06:5404862..5406467- functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *-*- Q17C31_AEDAE)"; NbS00025897g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.55|0.3|0.7|0.77|0.7|10|0|721; (*GB) gi|297746282|emb|CBI16338.3| (e_value=8e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q12873|CHD3_HUMAN (e_value=4e-19) Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3;; (*TAIR) AT2G25170.1 (e_value=2e-16) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc06g010220.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:5420779-5427793 transcript_region:SL2.40ch06:5420779..5427793- go_terms:GO:0005634,GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0005634,GO:0008270 NbS00024386g0010.1 protein AED:0.15 eAED:0.15 QI:74|0.5|0|0.66|0|0|3|0|38; (*GB) gi|124360156|gb|ABN08172.1| (e_value=5e-16) Zinc finger, DHHC-type [Medicago truncatula];; (*SWP) sp|Q3EBC2|ZDHC5_ARATH (e_value=4e-16) Probable S-acyltransferase At3g04970 OS=Arabidopsis thaliana GN=At3g04970 PE=2 SV=1;; (*TAIR) AT3G04970.2 (e_value=8e-18) | Symbols: | DHHC-type zinc finger family protein | chr3:1376240-1378010 FORWARD LENGTH=316;; (*ITAG) Solyc08g029200.2.1 (e_value=2e-18) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00024386g0011.1 protein AED:0.28 eAED:0.28 QI:123|1|1|1|0.5|0|3|0|127; (*GB) gi|224064448|ref|XP_002301481.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=3e-53) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=3e-54) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc01g099830.2.1 (e_value=3e-58) genomic_reference:SL2.40ch01 gene_region:81721206-81723201 transcript_region:SL2.40ch01:81721206..81723201+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00024386g0012.1 protein AED:0.32 eAED:0.66 QI:0|0|0|1|1|1|2|0|81; (*GB) gi|356573040|ref|XP_003554673.1| (e_value=1e-35) PREDICTED: probable S-acyltransferase At3g04970-like [Glycine max];; (*SWP) sp|Q3EBC2|ZDHC5_ARATH (e_value=1e-33) Probable S-acyltransferase At3g04970 OS=Arabidopsis thaliana GN=At3g04970 PE=2 SV=1;; (*TAIR) AT3G04970.2 (e_value=2e-35) | Symbols: | DHHC-type zinc finger family protein | chr3:1376240-1378010 FORWARD LENGTH=316;; (*ITAG) Solyc08g029200.2.1 (e_value=1e-49) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00016923g0004.1 protein AED:0.01 eAED:0.01 QI:205|1|1|1|1|1|2|235|200; (*GB) gi|255568563|ref|XP_002525255.1| (e_value=2e-82) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SN23|LBD38_ARATH (e_value=9e-75) LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1;; (*TAIR) AT3G49940.1 (e_value=7e-76) | Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247;; (*ITAG) Solyc02g092550.2.1 (e_value=3e-99) genomic_reference:SL2.40ch02 gene_region:48182706-48183792 transcript_region:SL2.40ch02:48182706..48183792+ functional_description:"LOB domain protein 38 (AHRD V1 ***- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00016923g0001.1 protein AED:0.09 eAED:0.09 QI:266|1|0.5|1|0|0|2|0|334; (*GB) gi|147772915|emb|CAN71564.1| (e_value=7e-116) hypothetical protein VITISV_007567 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=7e-66) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc02g064710.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:30401767-30403081 transcript_region:SL2.40ch02:30401767..30403081+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 ***- B9DHZ5_ARATH)"; NbS00043985g0002.1 protein AED:0.09 eAED:0.09 QI:56|1|0.77|1|0.12|0.33|9|0|330; (*GB) gi|255539823|ref|XP_002510976.1| (e_value=2e-162) Oligosaccharide translocation protein rft1, putative [Ricinus communis];; (*SWP) sp|Q54IV7|RFT1_DICDI (e_value=3e-39) Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1;; (*TAIR) AT5G07630.1 (e_value=5e-152) | Symbols: | lipid transporters | chr5:2410703-2414523 FORWARD LENGTH=611;; (*ITAG) Solyc05g051630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61145683-61160111 transcript_region:SL2.40ch05:61145683..61160111+ go_terms:GO:0005515,GO:0034202 functional_description:"RFT1 family protein (AHRD V1 ***- D3BUS7_POLPA); contains Interpro domain(s) IPR007594 RFT1 "; GO:0005515,GO:0034202 NbS00029787g0003.1 protein AED:0.05 eAED:0.05 QI:470|0.8|0.90|1|1|1|11|239|327; (*GB) gi|225442398|ref|XP_002282395.1| (e_value=1e-166) PREDICTED: inositol oxygenase 1 [Vitis vinifera];; (*SWP) sp|Q8L799|MIOX1_ARATH (e_value=7e-158) Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1;; (*TAIR) AT1G14520.1 (e_value=6e-159) | Symbols: MIOX1 | myo-inositol oxygenase 1 | chr1:4968376-4969954 REVERSE LENGTH=311;; (*ITAG) Solyc06g062430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35766631-35770051 transcript_region:SL2.40ch06:35766631..35770051- go_terms:GO:0050113 functional_description:"Inositol oxygenase (AHRD V1 **** A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0050113 NbS00034310g0005.1 protein AED:0.07 eAED:0.14 QI:0|0|0|0.8|0|0.2|5|0|654; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=1e-123) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=1e-111) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=4e-63) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc02g070410.1.1 (e_value=2e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34716709-34719108 transcript_region:SL2.40ch02:34716709..34719108+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00034310g0003.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|109 NbS00007493g0019.1 protein AED:0.34 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|260; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=1e-44) Putative I-box binding factor, identical [Solanum demissum];; (*ITAG) Solyc11g071500.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00007493g0018.1 protein AED:0.43 eAED:0.46 QI:31|0|0.5|1|0|0|2|0|107; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=4e-23) Putative I-box binding factor, identical [Solanum demissum];; (*ITAG) Solyc11g071500.1.1 (e_value=7e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00007493g0016.1 protein AED:0.26 eAED:0.26 QI:195|0.5|0.42|0.85|0.5|0.28|7|0|413; (*GB) gi|358249116|ref|NP_001240251.1| (e_value=1e-122) uncharacterized protein LOC100808307 [Glycine max];; (*SWP) sp|Q9ZQG9|E1314_ARATH (e_value=2e-32) Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2;; (*TAIR) AT5G21070.1 (e_value=4e-124) | Symbols: | unknown protein; Has 115 Blast hits to 115 proteins in 34 species: Archae - 1; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr5:7156356-7157490 FORWARD LENGTH=225;; (*ITAG) Solyc01g009150.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:3166875-3171384 transcript_region:SL2.40ch01:3166875..3171384+ functional_description:"Glycosyl hydrolase (Fragment) (AHRD V1 *-*- D9ZCE7_9CARY)"; NbS00007493g0024.1 protein AED:0.34 eAED:0.34 QI:565|1|1|1|0|0.5|2|596|136; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=3e-19) Putative I-box binding factor, identical [Solanum demissum];; (*ITAG) Solyc11g071500.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00036451g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|337; (*GB) gi|296086776|emb|CBI32925.3| (e_value=7e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LE98|ICR1_ARATH (e_value=5e-64) Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1;; (*TAIR) AT1G17140.2 (e_value=4e-65) | Symbols: ICR1, RIP1 | interactor of constitutive active rops 1 | chr1:5856740-5857861 REVERSE LENGTH=344;; (*ITAG) Solyc12g011360.1.1 (e_value=8e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4201254-4202360 transcript_region:SL2.40ch12:4201254..4202360+ functional_description:"Interactor of constitutive active ROPs 1 (AHRD V1 ***- ICR1_ARATH)"; NbS00036451g0004.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|79 NbS00036451g0006.1 protein AED:0.53 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|92 NbS00036451g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|582|517; (*GB) gi|255555517|ref|XP_002518795.1| (e_value=0.0) cationic amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9SHH0|CAAT8_ARATH (e_value=0.0) Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1;; (*TAIR) AT1G17120.1 (e_value=0.0) | Symbols: CAT8 | cationic amino acid transporter 8 | chr1:5851964-5853736 FORWARD LENGTH=590;; (*ITAG) Solyc12g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4203735-4205588 transcript_region:SL2.40ch12:4203735..4205588- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C2SWS0_BACCE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00036451g0003.1 protein AED:0.44 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|224061339|ref|XP_002300432.1| (e_value=1e-63) cationic amino acid transporter [Populus trichocarpa];; (*SWP) sp|Q9SHH0|CAAT8_ARATH (e_value=4e-61) Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1;; (*TAIR) AT1G17120.1 (e_value=3e-62) | Symbols: CAT8 | cationic amino acid transporter 8 | chr1:5851964-5853736 FORWARD LENGTH=590;; (*ITAG) Solyc12g011370.1.1 (e_value=7e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4203735-4205588 transcript_region:SL2.40ch12:4203735..4205588- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C2SWS0_BACCE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00034184g0004.1 protein AED:0.18 eAED:0.18 QI:110|0.86|0.82|1|0.86|0.86|23|0|1204; (*GB) gi|255551695|ref|XP_002516893.1| (e_value=0.0) always early, putative [Ricinus communis];; (*SWP) sp|Q6A332|ALY3_ARATH (e_value=0.0) Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1;; (*TAIR) AT3G21430.2 (e_value=0.0) | Symbols: ATALY3, ALY3 | DNA binding | chr3:7544800-7552841 REVERSE LENGTH=1132;; (*ITAG) Solyc01g067560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68741651-68761610 transcript_region:SL2.40ch01:68741651..68761610- go_terms:GO:0003677 functional_description:"Always early protein 3 (AHRD V1 **-- D7L0S7_ARALY); contains Interpro domain(s) IPR010561 DIRP "; GO:0003677 NbS00002189g0001.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|225445086|ref|XP_002283637.1| (e_value=3e-48) PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Vitis vinifera];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=4e-46) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=3e-47) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc06g082270.1.1 (e_value=3e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00008962g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|416; (*GB) gi|357446799|ref|XP_003593675.1| (e_value=1e-164) Anthocyanidin 3-O-glucosyltransferase [Medicago truncatula];; (*SWP) sp|Q9T081|U79B3_ARATH (e_value=9e-133) UDP-glycosyltransferase 79B3 OS=Arabidopsis thaliana GN=UGT79B3 PE=2 SV=1;; (*TAIR) AT4G27570.1 (e_value=7e-134) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:13763657-13765018 REVERSE LENGTH=453;; (*ITAG) Solyc10g008860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2907643-2909013 transcript_region:SL2.40ch10:2907643..2909013- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8H6A4_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00008962g0003.1 protein AED:0.25 eAED:0.53 QI:87|0|0|1|0|0|2|0|48 NbC25886763g0004.1 protein AED:0.30 eAED:0.35 QI:0|0|0|0.55|1|0.77|9|0|281; (*GB) gi|224063451|ref|XP_002301151.1| (e_value=3e-37) predicted protein [Populus trichocarpa];; (*TAIR) AT1G27760.3 (e_value=6e-27) | Symbols: SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family | chr1:9668895-9671322 FORWARD LENGTH=441;; (*ITAG) Solyc01g106150.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85858825-85859985 transcript_region:SL2.40ch01:85858825..85859985- go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00032522g0003.1 protein AED:0.06 eAED:0.06 QI:77|1|0.83|1|0.8|0.83|6|0|408; (*GB) gi|225461385|ref|XP_002284781.1| (e_value=0.0) PREDICTED: lanC-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=5e-90) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT1G52920.1 (e_value=0.0) | Symbols: GCR2, GPCR | G protein coupled receptor | chr1:19709360-19711048 REVERSE LENGTH=410;; (*ITAG) Solyc07g063310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63028670-63031331 transcript_region:SL2.40ch07:63028670..63031331+ go_terms:GO:0010427 functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; GO:0010427 NbS00033714g0006.1 protein AED:0.33 eAED:0.34 QI:0|0.6|0.66|1|1|1|6|0|316; (*GB) gi|112443176|gb|ABI18976.1| (e_value=4e-59) nuclear-localized RNA binding protein [Capsicum annuum];; (*TAIR) AT4G16830.1 (e_value=1e-18) | Symbols: | Hyaluronan / mRNA binding family | chr4:9470621-9472308 FORWARD LENGTH=355;; (*ITAG) Solyc01g090190.2.1 (e_value=8e-58) genomic_reference:SL2.40ch01 gene_region:75571683-75577506 transcript_region:SL2.40ch01:75571683..75577506- functional_description:"Nuclear RNA binding protein (AHRD V1 ***- C7TPG6_SOLTU); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; NbS00033714g0007.1 protein AED:0.34 eAED:0.35 QI:0|0.85|0.87|1|1|1|8|310|206; (*GB) gi|311907|emb|CAA51011.1| (e_value=4e-136) ras-related GTP-binding protein [Nicotiana tabacum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=3e-130) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=3e-131) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc01g090170.2.1 (e_value=4e-140) genomic_reference:SL2.40ch01 gene_region:75563002-75569993 transcript_region:SL2.40ch01:75563002..75569993+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00000120g0117.1 protein AED:0.10 eAED:0.10 QI:216|1|1|1|1|1|3|164|413 NbS00000120g0124.1 protein AED:0.28 eAED:0.28 QI:286|1|1|1|0.83|0.85|7|189|319 NbS00000120g0119.1 protein AED:0.32 eAED:0.32 QI:200|1|0.8|1|0.5|0.6|5|0|145 NbS00000120g0126.1 protein AED:0.07 eAED:0.07 QI:441|0.8|0.66|1|0.6|0.5|6|0|284 NbS00000120g0121.1 protein AED:0.08 eAED:0.08 QI:604|1|0.85|1|1|0.85|7|0|1017 NbS00000120g0128.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0|2|197|139 NbS00000120g0122.1 protein AED:0.39 eAED:0.39 QI:0|0.4|0.5|1|0.6|0.66|6|217|235 NbS00013629g0003.1 protein AED:0.13 eAED:0.13 QI:252|1|1|1|1|1|4|187|169; (*GB) gi|225446505|ref|XP_002278607.1| (e_value=7e-60) PREDICTED: OPA3-like protein [Vitis vinifera];; (*TAIR) AT1G28510.1 (e_value=3e-56) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc02g077470.2.1 (e_value=7e-70) genomic_reference:SL2.40ch02 gene_region:36976056-36983200 transcript_region:SL2.40ch02:36976056..36983200- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00032772g0001.1 protein AED:0.20 eAED:0.21 QI:0|1|0.66|1|0|0|3|447|236; (*GB) gi|147861903|emb|CAN82964.1| (e_value=1e-17) hypothetical protein VITISV_000345 [Vitis vinifera];; (*SWP) sp|Q9CY62|RN181_MOUSE (e_value=6e-17) E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1;; (*TAIR) AT4G26400.1 (e_value=3e-18) | Symbols: | RING/U-box superfamily protein | chr4:13344953-13346023 REVERSE LENGTH=356;; (*ITAG) Solyc01g016410.2.1 (e_value=5e-63) genomic_reference:SL2.40ch01 gene_region:19490537-19491509 transcript_region:SL2.40ch01:19490537..19491509- go_terms:GO:0008270 functional_description:"RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00049336g0006.1 protein AED:0.18 eAED:0.21 QI:0|0.44|0.4|0.9|0.66|0.6|10|0|455; (*GB) gi|225444694|ref|XP_002277754.1| (e_value=3e-118) PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis vinifera];; (*SWP) sp|Q9FT72|RQL3_ARATH (e_value=2e-103) ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 PE=1 SV=1;; (*TAIR) AT4G35740.2 (e_value=6e-106) | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase family protein | chr4:16936788-16940172 FORWARD LENGTH=620;; (*ITAG) Solyc07g042010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52175947-52191240 transcript_region:SL2.40ch07:52175947..52191240- go_terms:GO:0017116 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-** D8G648_9CYAN); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0017116 NbS00049336g0007.1 protein AED:0.47 eAED:0.54 QI:5|1|0.5|1|0|0|2|0|46 NbS00035591g0011.1 protein AED:0.29 eAED:0.31 QI:0|0.77|0.5|1|0.66|0.8|10|71|686; (*GB) gi|225439311|ref|XP_002267275.1| (e_value=0.0) PREDICTED: probable glutamate carboxypeptidase 2-like [Vitis vinifera];; (*SWP) sp|Q9M1S8|GCP2_ARATH (e_value=0.0) Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3;; (*TAIR) AT3G54720.1 (e_value=0.0) | Symbols: AMP1, COP2, HPT, PT, MFO1 | Peptidase M28 family protein | chr3:20254852-20257815 REVERSE LENGTH=705;; (*ITAG) Solyc11g045250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37043969-37057788 transcript_region:SL2.40ch11:37043969..37057788- go_terms:GO:0006508 functional_description:"N-acetylated alpha-linked acidic dipeptidase 2 (AHRD V1 **-- Q3UZV6_MOUSE); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00035591g0010.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0.33|0.25|4|0|405; (*GB) gi|224124294|ref|XP_002319295.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32120.1 (e_value=8e-68) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064400.1.1 (e_value=1e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63801554-63803617 transcript_region:SL2.40ch07:63801554..63803617- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *-*- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00014487g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|0.66|3|0|517; (*ITAG) Solyc01g066890.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00061039g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=5e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P93087|CALM_CAPAN (e_value=2e-105) Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3;; (*TAIR) AT3G43810.1 (e_value=7e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc12g099990.1.1 (e_value=1e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65249443-65252546 transcript_region:SL2.40ch12:65249443..65252546- go_terms:GO:0005509 functional_description:"Calmodulin 2 (AHRD V1 ***- Q710C9_BRAOL); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00000622g0023.1 protein AED:0.02 eAED:0.05 QI:0|0.33|0.25|1|0.33|0.5|4|0|1093; (*GB) gi|350535867|ref|NP_001234729.1| (e_value=0.0) CDC5-like protein [Solanum lycopersicum];; (*SWP) sp|P92948|CDC5L_ARATH (e_value=0.0) Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2;; (*TAIR) AT1G09770.1 (e_value=0.0) | Symbols: ATCDC5, CDC5, ATMYBCDC5 | cell division cycle 5 | chr1:3162002-3165122 FORWARD LENGTH=844;; (*ITAG) Solyc04g009950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3261269-3266696 transcript_region:SL2.40ch04:3261269..3266696+ go_terms:GO:0019904 functional_description:"Pre-mRNA splicing factor (AHRD V1 **-- C5K279_AJEDS); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0019904 NbS00000622g0021.1 protein AED:0.09 eAED:0.09 QI:0|0.57|0.62|1|0.57|0.75|8|0|414; (*GB) gi|221222546|gb|ABZ89191.1| (e_value=0.0) putative protein [Coffea canephora];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=3e-110) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.1 (e_value=1e-113) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=472;; (*ITAG) Solyc04g009930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:3248530-3253636 transcript_region:SL2.40ch04:3248530..3253636+ go_terms:GO:0020037,GO:0006810,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0006810,GO:0055114 NbS00000622g0022.1 protein AED:0.34 eAED:0.34 QI:234|0.72|0.75|1|0.72|0.66|12|433|295; (*GB) gi|225453038|ref|XP_002266453.1| (e_value=6e-106) PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera];; (*TAIR) AT1G08640.1 (e_value=1e-89) | Symbols: CJD1 | Chloroplast J-like domain 1 | chr1:2748714-2751209 REVERSE LENGTH=294;; (*ITAG) Solyc04g009940.2.1 (e_value=9e-142) genomic_reference:SL2.40ch04 gene_region:3255363-3260014 transcript_region:SL2.40ch04:3255363..3260014+ functional_description:"Heat shock protein binding protein (AHRD V1 **-- D7KIU0_ARALY)"; NbS00000622g0020.1 protein AED:0.37 eAED:0.42 QI:0|0|0.33|1|0|0.33|3|53|265; (*GB) gi|255543777|ref|XP_002512951.1| (e_value=2e-58) myo inositol monophosphatase, putative [Ricinus communis];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=1e-55) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=2e-56) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g109930.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:88522523-88527340 transcript_region:SL2.40ch01:88522523..88527340+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7MGB6_ARALY); contains Interpro domain(s) IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase "; GO:0008934 NbS00000622g0018.1 protein AED:0.03 eAED:0.03 QI:28|1|1|1|1|1|2|175|277; (*GB) gi|350539451|ref|NP_001234394.1| (e_value=0.0) phosphoenolpyruvate carboxylase kinase [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=3e-110) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.1 (e_value=3e-111) | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753232 FORWARD LENGTH=284;; (*ITAG) Solyc04g009900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000622g0019.1 protein AED:0.33 eAED:0.39 QI:0|0.54|0.5|1|0.90|0.83|12|0|563; (*GB) gi|225453032|ref|XP_002266145.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248394 [Vitis vinifera];; (*SWP) sp|Q8GWB7|GUX6_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1;; (*TAIR) AT5G18480.1 (e_value=0.0) | Symbols: PGSIP6 | plant glycogenin-like starch initiation protein 6 | chr5:6131307-6133787 REVERSE LENGTH=537;; (*ITAG) Solyc04g009920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3239955-3246719 transcript_region:SL2.40ch04:3239955..3246719- go_terms:GO:0016758 functional_description:"Glycogenin-like protein (AHRD V1 *-*- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00038773g0001.1 protein AED:0.06 eAED:0.06 QI:386|1|1|1|0.5|0.33|3|435|357; (*GB) gi|224082688|ref|XP_002306796.1| (e_value=3e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=1e-121) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1;; (*TAIR) AT3G22830.1 (e_value=8e-123) | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription factor A6B | chr3:8078981-8080895 FORWARD LENGTH=406;; (*ITAG) Solyc09g065660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59473864-59475995 transcript_region:SL2.40ch09:59473864..59475995+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 ***- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00038773g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|91209031|ref|YP_538893.1| (e_value=2e-32) Ycf2 [Solanum bulbocastanum];; (*SWP) sp|Q2MIC5|YCF2_SOLBU (e_value=6e-34) Protein ycf2 OS=Solanum bulbocastanum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-20) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-35) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00031918g0001.1 protein AED:0.15 eAED:0.16 QI:312|1|0.66|1|0.5|0.33|3|0|471; (*GB) gi|255549070|ref|XP_002515591.1| (e_value=3e-174) Inner membrane protein yrbE, putative [Ricinus communis];; (*SWP) sp|Q8L4R0|TGD1_ARATH (e_value=3e-169) Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1;; (*TAIR) AT1G19800.1 (e_value=2e-170) | Symbols: TGD1 | trigalactosyldiacylglycerol 1 | chr1:6846812-6847954 FORWARD LENGTH=350;; (*ITAG) Solyc01g100250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82087534-82089060 transcript_region:SL2.40ch01:82087534..82089060+ functional_description:"ABC transporter permease protein (AHRD V1 ***- Q08TD1_STIAU); contains Interpro domain(s) IPR003453 Protein of unknown function DUF140 "; NbS00054918g0010.1 protein AED:0.00 eAED:0.00 QI:297|1|1|1|1|1|2|174|165; (*GB) gi|124484379|dbj|BAF46300.1| (e_value=3e-60) GPI-anchored protein [Ipomoea nil];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=5e-39) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT5G56170.1 (e_value=1e-50) | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | chr5:22736072-22737108 FORWARD LENGTH=168;; (*ITAG) Solyc07g066100.2.1 (e_value=8e-77) genomic_reference:SL2.40ch07 gene_region:64845601-64848293 transcript_region:SL2.40ch07:64845601..64848293+ functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00054918g0002.1 protein AED:0.28 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|315; (*GB) gi|147816693|emb|CAN62262.1| (e_value=6e-91) hypothetical protein VITISV_013985 [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=5e-42) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=4e-43) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc07g066110.1.1 (e_value=6e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64848778-64850361 transcript_region:SL2.40ch07:64848778..64850361+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00054918g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|213; (*GB) gi|255581953|ref|XP_002531775.1| (e_value=5e-93) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=7e-56) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=5e-57) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc07g066110.1.1 (e_value=3e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64848778-64850361 transcript_region:SL2.40ch07:64848778..64850361+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00054918g0011.1 protein AED:0.38 eAED:0.38 QI:179|0.9|0.90|0.90|0.4|0.45|11|0|417; (*GB) gi|224061655|ref|XP_002300588.1| (e_value=0.0) actin related protein [Populus trichocarpa];; (*SWP) sp|Q9FKT0|ARP8_ARATH (e_value=0.0) Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1;; (*TAIR) AT5G56180.1 (e_value=0.0) | Symbols: ATARP8, ARP8 | actin-related protein 8 | chr5:22737539-22740986 REVERSE LENGTH=471;; (*ITAG) Solyc07g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64850561-64856883 transcript_region:SL2.40ch07:64850561..64856883- go_terms:GO:0005200 functional_description:"Actin-6 (AHRD V1 ***- A8WB03_ORYRU); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbC26021894g0001.1 protein AED:0.47 eAED:0.47 QI:19|0|0.25|0.75|1|1|4|116|18 NbS00052547g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.87|1|1|1|8|0|257; (*GB) gi|147828008|emb|CAN70796.1| (e_value=4e-114) hypothetical protein VITISV_029203 [Vitis vinifera];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=2e-94) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=1e-95) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc07g045430.2.1 (e_value=8e-150) genomic_reference:SL2.40ch07 gene_region:55851110-55854983 transcript_region:SL2.40ch07:55851110..55854983+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00008079g0001.1 protein AED:0.06 eAED:0.06 QI:202|0|0.66|1|0|0.33|3|1734|115; (*GB) gi|356537186|ref|XP_003537110.1| (e_value=3e-72) PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Glycine max];; (*SWP) sp|Q0JG75|PSB28_ORYSJ (e_value=1e-69) Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2;; (*TAIR) AT4G28660.1 (e_value=6e-68) | Symbols: PSB28 | photosystem II reaction center PSB28 protein | chr4:14150008-14150933 FORWARD LENGTH=183;; (*ITAG) Solyc09g064500.2.1 (e_value=1e-80) genomic_reference:SL2.40ch09 gene_region:57371665-57373328 transcript_region:SL2.40ch09:57371665..57373328- go_terms:GO:0016020 functional_description:"Photosystem II reaction center psb28 protein (AHRD V1 ***- C6SZM2_SOYBN); contains Interpro domain(s) IPR005610 Photosystem II protein Psb28, class 1 "; GO:0016020 NbS00008079g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|767; (*GB) gi|359480061|ref|XP_002269766.2| (e_value=0.0) PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera];; (*SWP) sp|O64495|SDD1_ARATH (e_value=0.0) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=0.0) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc09g064490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57369054-57371528 transcript_region:SL2.40ch09:57369054..57371528+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6U0R8_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00002271g0109.1 protein AED:0.00 eAED:0.00 QI:135|1|1|1|1|1|2|94|90 NbS00002271g0110.1 protein AED:0.00 eAED:0.00 QI:188|1|1|1|1|1|4|235|2186 NbS00000030g0010.1 protein AED:0.12 eAED:0.13 QI:247|1|0.84|1|0.91|0.84|13|0|959; (*GB) gi|255583860|ref|XP_002532681.1| (e_value=2e-97) Epsin-2, putative [Ricinus communis];; (*SWP) sp|Q67YI9|EPN2_ARATH (e_value=1e-90) Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1;; (*TAIR) AT2G43160.4 (e_value=5e-94) | Symbols: | ENTH/VHS family protein | chr2:17948884-17952920 FORWARD LENGTH=646;; (*ITAG) Solyc12g098740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64488255-64496191 transcript_region:SL2.40ch12:64488255..64496191+ functional_description:"Epsin-1 (AHRD V1 *-*- C0HAA4_SALSA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00015063g0006.1 protein AED:0.32 eAED:0.46 QI:0|0.66|0|1|0.66|0.75|4|0|88; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=1e-43) D1 protease precursor [Nicotiana plumbaginifolia];; (*TAIR) AT4G17740.2 (e_value=1e-39) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00019746g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|1|0.75|0.6|5|364|194; (*GB) gi|255575728|ref|XP_002528763.1| (e_value=1e-75) transporter, putative [Ricinus communis];; (*SWP) sp|Q9AST6|VSP55_ARATH (e_value=4e-62) Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1;; (*TAIR) AT1G32410.5 (e_value=3e-63) | Symbols: | Vacuolar protein sorting 55 (VPS55) family protein | chr1:11694398-11695297 FORWARD LENGTH=140;; (*ITAG) Solyc08g077260.2.1 (e_value=1e-88) genomic_reference:SL2.40ch08 gene_region:58350941-58352212 transcript_region:SL2.40ch08:58350941..58352212+ go_terms:GO:0005215 functional_description:"Leptin receptor overlapping transcript-like 1 (AHRD V1 **-- C1BVZ5_ESOLU); contains Interpro domain(s) IPR007262 Vacuolar protein sorting 55 "; GO:0005215 NbS00045366g0009.1 protein AED:0.18 eAED:0.20 QI:0|1|0|1|1|1|2|0|339; (*GB) gi|225456485|ref|XP_002280881.1| (e_value=2e-92) PREDICTED: uncharacterized protein LOC100266238 [Vitis vinifera];; (*TAIR) AT2G33550.1 (e_value=3e-73) | Symbols: | Homeodomain-like superfamily protein | chr2:14210180-14211487 REVERSE LENGTH=314;; (*ITAG) Solyc03g118230.1.1 (e_value=3e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61212267-61213419 transcript_region:SL2.40ch03:61212267..61213419+ go_terms:GO:0003700 functional_description:"Sh4 homologue protein (AHRD V1 *-*- B6ZKH4_ECHCG); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00045366g0002.1 protein AED:0.00 eAED:0.00 QI:152|0|0.5|1|0|1|2|36|327; (*GB) gi|7839365|gb|AAF70243.1|AF213968_1 (e_value=0.0) S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum];; (*SWP) sp|Q55467|CHLM_SYNY3 (e_value=7e-88) Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=chlM PE=3 SV=1;; (*TAIR) AT4G25080.5 (e_value=3e-146) | Symbols: CHLM | magnesium-protoporphyrin IX methyltransferase | chr4:12877015-12878128 FORWARD LENGTH=312;; (*ITAG) Solyc03g118240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61214116-61216115 transcript_region:SL2.40ch03:61214116..61216115- go_terms:GO:0046406 functional_description:"Magnesium-protoporphyrin ix methyltransferase (AHRD V1 **** D7MGJ7_ARALY); contains Interpro domain(s) IPR010251 Magnesium protoporphyrin O-methyltransferase "; GO:0046406 NbS00013323g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|346; (*GB) gi|225451024|ref|XP_002284899.1| (e_value=1e-83) PREDICTED: E3 ubiquitin-protein ligase ATL6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=9e-62) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=7e-63) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=4e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00013323g0008.1 protein AED:0.13 eAED:0.13 QI:436|1|1|1|0.85|0.75|8|290|256; (*GB) gi|225456507|ref|XP_002284683.1| (e_value=7e-115) PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera];; (*SWP) sp|Q59YL9|ESF2_CANAL (e_value=2e-41) Pre-rRNA-processing protein ESF2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ESF2 PE=3 SV=2;; (*TAIR) AT3G56510.2 (e_value=5e-96) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:20944348-20946235 REVERSE LENGTH=257;; (*ITAG) Solyc10g008130.2.1 (e_value=5e-147) genomic_reference:SL2.40ch10 gene_region:2270922-2273383 transcript_region:SL2.40ch10:2270922..2273383+ go_terms:GO:0016251 functional_description:"Pre-rRNA-processing protein ESF2 (AHRD V1 ***- D0MVG4_PHYIN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0016251 NbS00013323g0007.1 protein AED:0.30 eAED:0.30 QI:23|0.8|0.83|1|0.8|0.83|6|476|207; (*GB) gi|255570175|ref|XP_002526048.1| (e_value=2e-144) protein with unknown function [Ricinus communis];; (*SWP) sp|Q38922|RAB1B_ARATH (e_value=8e-141) Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1;; (*TAIR) AT4G35860.1 (e_value=6e-142) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988839 REVERSE LENGTH=211;; (*ITAG) Solyc02g093530.2.1 (e_value=4e-151) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00017326g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|806; (*GB) gi|359492186|ref|XP_002280691.2| (e_value=0.0) PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Vitis vinifera];; (*SWP) sp|O23052|Y1515_ARATH (e_value=0.0) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=0.0) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017326g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|134; (*GB) gi|388502874|gb|AFK39503.1| (e_value=2e-22) unknown [Medicago truncatula];; (*TAIR) AT1G62790.2 (e_value=2e-16) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23252369-23253481 FORWARD LENGTH=149;; (*ITAG) Solyc08g007460.2.1 (e_value=9e-40) genomic_reference:SL2.40ch08 gene_region:2031768-2034424 transcript_region:SL2.40ch08:2031768..2034424+ go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 -*** B9RGU5_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00017326g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|104; (*ITAG) Solyc04g081040.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62690791-62691060 transcript_region:SL2.40ch04:62690791..62691060- functional_description:"Unknown Protein (AHRD V1)"; NbS00058788g0003.1 protein AED:0.07 eAED:0.07 QI:149|1|1|1|1|1|2|271|515; (*GB) gi|225456565|ref|XP_002265310.1| (e_value=0.0) PREDICTED: cytochrome P450 78A4 isoform 1 [Vitis vinifera];; (*SWP) sp|O65012|C78A4_PINRA (e_value=5e-168) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT1G74110.1 (e_value=0.0) | Symbols: CYP78A10 | cytochrome P450, family 78, subfamily A, polypeptide 10 | chr1:27866667-27868368 REVERSE LENGTH=537;; (*ITAG) Solyc03g114940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58849423-58851764 transcript_region:SL2.40ch03:58849423..58851764- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00058322g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|726|358; (*GB) gi|225453434|ref|XP_002272894.1| (e_value=4e-147) PREDICTED: uncharacterized protein LOC100244389 [Vitis vinifera];; (*TAIR) AT3G60400.1 (e_value=6e-120) | Symbols: | Mitochondrial transcription termination factor family protein | chr3:22329093-22330769 FORWARD LENGTH=558;; (*ITAG) Solyc01g090490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:75927901-75929793 transcript_region:SL2.40ch01:75927901..75929793+ functional_description:"mTERF family protein (AHRD V1 **-- B6SVQ8_MAIZE); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00029922g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|90 NbS00029922g0008.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|1|1|3|0|163; (*GB) gi|167018103|gb|ABZ05022.1| (e_value=1e-77) delta-12 fatty acid desaturase [Davidia involucrata];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=4e-72) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=1e-68) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc12g049030.1.1 (e_value=6e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45906133-45907287 transcript_region:SL2.40ch12:45906133..45907287- go_terms:GO:0055114 functional_description:"Fatty acid desaturase (AHRD V1 ***- B3SP99_CAPAN); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0055114 NbS00048819g0001.1 protein AED:0.25 eAED:0.35 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|25053813|gb|AAN71903.1| (e_value=9e-91) calcium/calmodulin protein kinase 1 [Nicotiana tabacum];; (*ITAG) Solyc11g006900.1.1 (e_value=1e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1427677-1428273 transcript_region:SL2.40ch11:1427677..1428273+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 ***- Q84ZT8_TOBAC)"; NbS00001035g0001.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|1|1|4|0|125; (*GB) gi|76573335|gb|ABA46772.1| (e_value=5e-89) RUB1-conjugating enzyme-like protein [Solanum tuberosum];; (*SWP) sp|Q9SDY5|RCE1_ARATH (e_value=1e-82) NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1;; (*TAIR) AT4G36800.2 (e_value=7e-84) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184;; (*ITAG) Solyc04g079970.2.1 (e_value=1e-91) genomic_reference:SL2.40ch04 gene_region:61876931-61880760 transcript_region:SL2.40ch04:61876931..61880760+ go_terms:GO:0019788 functional_description:"Ubiquitin-conjugating enzyme E2 11 (AHRD V1 ***- UBC11_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019788 NbS00001035g0006.1 protein AED:0.30 eAED:0.40 QI:0|0|0|0.5|0|0|4|0|66 NbS00019702g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|570; (*GB) gi|255540717|ref|XP_002511423.1| (e_value=0.0) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|O80742|PUB19_ARATH (e_value=3e-127) U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1;; (*TAIR) AT1G60190.1 (e_value=2e-128) | Symbols: | ARM repeat superfamily protein | chr1:22198403-22200463 FORWARD LENGTH=686;; (*ITAG) Solyc03g114160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58229802-58231850 transcript_region:SL2.40ch03:58229802..58231850+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00019702g0005.1 protein AED:0.25 eAED:0.88 QI:21|0|0|1|0|0.5|2|306|21 NbS00019702g0004.1 protein AED:0.46 eAED:0.56 QI:0|0|0|1|0|0|2|0|67; (*GB) gi|113205445|gb|AAW28576.2| (e_value=2e-14) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00038760g0001.1 protein AED:0.54 eAED:0.55 QI:39|0|0|0.33|1|1|3|0|51; (*GB) gi|676882|dbj|BAA06149.1| (e_value=6e-17) pit1 [Nicotiana tabacum]; NbS00038760g0002.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|1|1|3|0|121; (*GB) gi|676882|dbj|BAA06149.1| (e_value=2e-18) pit1 [Nicotiana tabacum]; NbS00001019g0015.1 protein AED:0.06 eAED:0.06 QI:150|1|1|1|0.88|0.88|18|420|738; (*GB) gi|225462994|ref|XP_002263791.1| (e_value=0.0) PREDICTED: DNA replication licensing factor mcm5-A-like [Vitis vinifera];; (*SWP) sp|P55862|MCM5A_XENLA (e_value=0.0) DNA replication licensing factor mcm5-A OS=Xenopus laevis GN=mcm5-a PE=1 SV=2;; (*TAIR) AT2G07690.1 (e_value=0.0) | Symbols: MCM5 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:3523379-3527388 REVERSE LENGTH=727;; (*ITAG) Solyc07g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46570-52388 transcript_region:SL2.40ch07:46570..52388- go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2UAJ0_ASPOR); contains Interpro domain(s) IPR008048 MCM protein 5 "; GO:0005515 NbS00001019g0014.1 protein AED:0.21 eAED:0.22 QI:0|0.53|0.56|0.93|0.6|0.5|16|0|1242; (*GB) gi|379987682|gb|AFD22621.1| (e_value=0.0) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|A7LFZ6|DCL4_ORYSJ (e_value=0.0) Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1;; (*TAIR) AT5G20320.2 (e_value=0.0) | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1688;; (*ITAG) Solyc07g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00001019g0020.1 protein AED:0.24 eAED:0.25 QI:0|1|0.87|1|1|1|8|0|297; (*GB) gi|225462992|ref|XP_002264438.1| (e_value=3e-102) PREDICTED: uncharacterized protein LOC100248232 [Vitis vinifera];; (*TAIR) AT2G22650.1 (e_value=3e-86) | Symbols: | FAD-dependent oxidoreductase family protein | chr2:9624703-9626931 REVERSE LENGTH=420;; (*ITAG) Solyc07g005240.2.1 (e_value=1e-150) genomic_reference:SL2.40ch07 gene_region:213548-218992 transcript_region:SL2.40ch07:213548..218992- go_terms:GO:0016491 functional_description:"FAD-dependent oxidoreductase family protein (AHRD V1 **-- D7LAA7_ARALY); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00012940g0005.1 protein AED:0.08 eAED:0.08 QI:205|1|1|1|0.83|0.85|7|383|287; (*GB) gi|147766029|emb|CAN61397.1| (e_value=7e-159) hypothetical protein VITISV_015779 [Vitis vinifera];; (*SWP) sp|Q9ZVI3|QKIL3_ARATH (e_value=3e-141) KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1;; (*TAIR) AT2G38610.2 (e_value=2e-142) | Symbols: | RNA-binding KH domain-containing protein | chr2:16147552-16149638 REVERSE LENGTH=286;; (*ITAG) Solyc06g082710.2.1 (e_value=2e-177) genomic_reference:SL2.40ch06 gene_region:44722997-44726998 transcript_region:SL2.40ch06:44722997..44726998- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B4FN92_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00001253g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.25|1|0.33|0|4|0|909; (*GB) gi|255583590|ref|XP_002532551.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc01g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1677070-1680707 transcript_region:SL2.40ch01:1677070..1680707+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00047909g0010.1 protein AED:0.10 eAED:0.14 QI:0|0|0|1|0.28|0.25|8|0|646; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=4e-163) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=2e-149) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=1e-150) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00013271g0006.1 protein AED:0.00 eAED:0.00 QI:105|1|1|1|1|1|4|282|140; (*GB) gi|224065549|ref|XP_002301852.1| (e_value=6e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|P49690|RL23_ARATH (e_value=3e-97) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=2e-98) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=1e-99) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00003995g0010.1 protein AED:0.00 eAED:0.00 QI:61|1|1|1|0|1|2|279|67 NbS00003995g0011.1 protein AED:0.05 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|520; (*GB) gi|224064366|ref|XP_002301440.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SYK1|PPR11_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1;; (*TAIR) AT1G05600.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1672161-1673675 FORWARD LENGTH=504;; (*ITAG) Solyc07g045380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55815203-55820247 transcript_region:SL2.40ch07:55815203..55820247+ go_terms:GO:0016192 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KF62_ARALY); contains Interpro domain(s) IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat "; GO:0016192 NbS00039798g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|108; (*GB) gi|255578805|ref|XP_002530259.1| (e_value=1e-54) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54E29|THG1_DICDI (e_value=1e-31) Probable tRNA(His) guanylyltransferase OS=Dictyostelium discoideum GN=thg1 PE=3 SV=1;; (*TAIR) AT2G32320.3 (e_value=1e-52) | Symbols: | tRNAHis guanylyltransferase | chr2:13727938-13731428 FORWARD LENGTH=532;; (*ITAG) Solyc04g051600.2.1 (e_value=6e-67) genomic_reference:SL2.40ch04 gene_region:50039582-50055249 transcript_region:SL2.40ch04:50039582..50055249+ go_terms:GO:0005515,GO:0008193 functional_description:"tRNA(His) guanylyltransferase (AHRD V1 *-** C1GHL3_PARBD); contains Interpro domain(s) IPR007537 tRNAHis guanylyltransferase "; GO:0005515,GO:0008193 NbS00039798g0009.1 protein AED:0.23 eAED:0.53 QI:67|1|0.5|1|0|0|2|0|540; (*GB) gi|224081266|ref|XP_002306359.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21860.1 (e_value=0.0) | Symbols: | violaxanthin de-epoxidase-related | chr2:9318333-9319990 REVERSE LENGTH=522;; (*ITAG) Solyc04g051610.2.1 (e_value=6e-171) genomic_reference:SL2.40ch04 gene_region:50055286-50057216 transcript_region:SL2.40ch04:50055286..50057216- functional_description:"Violaxanthin de-epoxidase-related protein (AHRD V1 ***- A8J136_CHLRE)"; NbS00039798g0101.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|72 NbS00039798g0110.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|0.66|0.75|4|579|325 NbS00039798g0109.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|0|0|4|0|176 NbS00047137g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|564; (*ITAG) Solyc08g044390.1.1 (e_value=5e-129) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31808013-31809605 transcript_region:SL2.40ch08:31808013..31809605- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00029554g0015.1 protein AED:0.09 eAED:0.09 QI:123|1|1|1|0.83|0.85|7|180|434; (*GB) gi|224124110|ref|XP_002330107.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=0.0) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=0.0) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc03g070440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:39294614-39296771 transcript_region:SL2.40ch03:39294614..39296771+ functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00029554g0014.1 protein AED:0.13 eAED:0.14 QI:0|1|0.85|1|0.16|0.14|7|0|203; (*GB) gi|13384048|gb|AAK21248.1|AF335235_1 (e_value=1e-127) MADS-box transcription factor FBP5 [Petunia x hybrida];; (*SWP) sp|P29384|SEP2_ARATH (e_value=4e-85) Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1;; (*TAIR) AT3G02310.1 (e_value=3e-86) | Symbols: SEP2, AGL4 | K-box region and MADS-box transcription factor family protein | chr3:464554-466687 REVERSE LENGTH=250;; (*ITAG) Solyc02g089200.2.1 (e_value=3e-123) genomic_reference:SL2.40ch02 gene_region:45652869-45657506 transcript_region:SL2.40ch02:45652869..45657506+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00029554g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.5|0.83|1|1|6|0|466; (*GB) gi|225456559|ref|XP_002264600.1| (e_value=0.0) PREDICTED: protein COBRA [Vitis vinifera];; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc02g089120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45585636-45589401 transcript_region:SL2.40ch02:45585636..45589401+ functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00029554g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|1|1|3|0|131; (*GB) gi|224077736|ref|XP_002305386.1| (e_value=5e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=6e-35) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT1G69240.1 (e_value=7e-52) | Symbols: ATMES15, MES15, RHS9 | methyl esterase 15 | chr1:26028115-26030218 REVERSE LENGTH=444;; (*ITAG) Solyc02g089060.2.1 (e_value=3e-64) genomic_reference:SL2.40ch02 gene_region:45538678-45544081 transcript_region:SL2.40ch02:45538678..45544081+ go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00010042g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.53|0.92|0.91|0.84|13|506|662; (*GB) gi|147800946|emb|CAN75565.1| (e_value=0.0) hypothetical protein VITISV_032583 [Vitis vinifera];; (*SWP) sp|Q55680|Y005_SYNY3 (e_value=2e-79) Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1;; (*TAIR) AT2G39190.2 (e_value=0.0) | Symbols: ATATH8 | Protein kinase superfamily protein | chr2:16350140-16355745 FORWARD LENGTH=814;; (*ITAG) Solyc04g049380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40914182-40935245 transcript_region:SL2.40ch04:40914182..40935245+ go_terms:GO:0005215 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00010042g0008.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0|0.66|1|1|3|0|154; (*GB) gi|255585088|ref|XP_002533250.1| (e_value=8e-51) Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis];; (*TAIR) AT2G39190.2 (e_value=5e-47) | Symbols: ATATH8 | Protein kinase superfamily protein | chr2:16350140-16355745 FORWARD LENGTH=814;; (*ITAG) Solyc04g049380.2.1 (e_value=2e-73) genomic_reference:SL2.40ch04 gene_region:40914182-40935245 transcript_region:SL2.40ch04:40914182..40935245+ go_terms:GO:0005215 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00011092g0011.1 protein AED:0.16 eAED:0.18 QI:210|0.71|0.62|1|0.71|0.75|8|99|473; (*GB) gi|302141846|emb|CBI19049.3| (e_value=4e-126) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g093210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47847208-47852705 transcript_region:SL2.40ch03:47847208..47852705+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011092g0010.1 protein AED:0.20 eAED:0.20 QI:788|1|0.75|1|0.33|0.5|4|0|95; (*GB) gi|255539785|ref|XP_002510957.1| (e_value=9e-50) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B6SGC5|CNR6_MAIZE (e_value=1e-34) Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1;; (*TAIR) AT5G51400.1 (e_value=6e-41) | Symbols: | PLAC8 family protein | chr5:20878784-20880036 REVERSE LENGTH=241;; (*ITAG) Solyc03g093200.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:47837141-47842986 transcript_region:SL2.40ch03:47837141..47842986+ functional_description:"Os04g0461600 protein (Fragment) (AHRD V1 *-*- Q0JCM6_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00011092g0009.1 protein AED:0.37 eAED:0.37 QI:44|1|1|1|1|1|2|333|95; (*GB) gi|356550840|ref|XP_003543791.1| (e_value=9e-45) PREDICTED: uncharacterized protein LOC100815781 [Glycine max];; (*TAIR) AT1G21930.1 (e_value=2e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7713466-7714298 FORWARD LENGTH=98;; (*ITAG) Solyc03g093220.2.1 (e_value=9e-56) genomic_reference:SL2.40ch03 gene_region:47854719-47857689 transcript_region:SL2.40ch03:47854719..47857689- functional_description:"Unknown Protein (AHRD V1)"; NbS00026183g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|87; (*ITAG) Solyc04g081380.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62981367-62981780 transcript_region:SL2.40ch04:62981367..62981780+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036246g0001.1 protein AED:0.28 eAED:0.28 QI:340|0.5|0.2|1|0.75|0.6|5|515|138; (*GB) gi|255556538|ref|XP_002519303.1| (e_value=5e-78) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|C0LU16|MED21_ARATH (e_value=4e-70) Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1;; (*TAIR) AT4G04780.1 (e_value=3e-71) | Symbols: MED21 | mediator 21 | chr4:2432665-2433397 FORWARD LENGTH=139;; (*ITAG) Solyc02g080430.2.1 (e_value=2e-92) genomic_reference:SL2.40ch02 gene_region:39228823-39231117 transcript_region:SL2.40ch02:39228823..39231117- functional_description:"Mediator of RNA polymerase II transcription subunit 21 (AHRD V1 ***- MED21_CAEEL)"; NbS00035815g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.87|0.66|1|1|1|9|0|314; (*GB) gi|224081698|ref|XP_002306477.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VQX4|PNCB_DROME (e_value=7e-122) Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2;; (*TAIR) AT2G23420.1 (e_value=0.0) | Symbols: NAPRT2 | nicotinate phosphoribosyltransferase 2 | chr2:9971819-9974909 FORWARD LENGTH=557;; (*ITAG) Solyc02g093290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48771224-48779373 transcript_region:SL2.40ch02:48771224..48779373+ go_terms:GO:0004516 functional_description:"Nicotinate phosphoribosyltransferase-like protein (AHRD V1 **** Q6XQM5_MEDTR); contains Interpro domain(s) IPR006405 Nicotinate phosphoribosyltransferase putative "; GO:0004516 NbS00035815g0012.1 protein AED:0.68 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|92 NbS00035815g0013.1 protein AED:0.08 eAED:0.08 QI:58|0.93|0.93|1|0.79|0.76|30|104|1506; (*GB) gi|380710181|gb|AFD98849.1| (e_value=0.0) DNA polymerase alpha catalytic subunit [Solanum lycopersicum];; (*SWP) sp|O48653|DPOLA_ORYSJ (e_value=0.0) DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2;; (*TAIR) AT5G67100.1 (e_value=0.0) | Symbols: ICU2 | DNA-directed DNA polymerases | chr5:26776994-26785104 FORWARD LENGTH=1524;; (*ITAG) Solyc02g093300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48779267-48792010 transcript_region:SL2.40ch02:48779267..48792010- go_terms:GO:0003887 functional_description:"DNA polymerase (AHRD V1 **** B9SC90_RICCO); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003887 NbS00035815g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|97 NbS00041061g0004.1 protein AED:0.10 eAED:0.10 QI:221|1|0.66|1|0.8|0.66|6|0|504; (*GB) gi|224070913|ref|XP_002303293.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WVL7|GOGC5_ARATH (e_value=4e-49) Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1;; (*TAIR) AT1G79830.4 (e_value=3e-50) | Symbols: GC5 | golgin candidate 5 | chr1:30028110-30033508 REVERSE LENGTH=976;; (*ITAG) Solyc06g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38239615-38254781 transcript_region:SL2.40ch06:38239615..38254781- go_terms:GO:0005515 functional_description:"TATA element modulatory factor 1 (AHRD V1 *--- Q6DEI1_DANRE)"; GO:0005515 NbS00000062g0004.1 protein AED:0.24 eAED:0.27 QI:0|0|0|0.5|0.4|0.16|6|0|411; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-44) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=9e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00001903g0022.1 protein AED:0.08 eAED:0.08 QI:187|0.92|0.92|1|0.84|0.85|14|587|513; (*GB) gi|40557601|gb|AAR88094.1| (e_value=0.0) notchless-like protein [Solanum chacoense];; (*SWP) sp|Q9FLX9|NLE1_ARATH (e_value=0.0) Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1;; (*TAIR) AT5G52820.1 (e_value=0.0) | Symbols: | WD-40 repeat family protein / notchless protein, putative | chr5:21401423-21404203 FORWARD LENGTH=473;; (*ITAG) Solyc03g112530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56968670-56976442 transcript_region:SL2.40ch03:56968670..56976442- go_terms:GO:0045505 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 (AHRD V1 **-* GBB3_HUMAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00001903g0021.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|0|0.33|3|0|146; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00001903g0017.1 protein AED:0.35 eAED:0.35 QI:0|1|0.87|1|1|0.87|8|678|232; (*GB) gi|225456942|ref|XP_002281490.1| (e_value=1e-98) PREDICTED: FKBP12-interacting protein of 37 kDa [Vitis vinifera];; (*SWP) sp|Q9ZSZ8|FIP37_ARATH (e_value=3e-78) FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1;; (*TAIR) AT3G54170.1 (e_value=2e-79) | Symbols: ATFIP37, FIP37 | FKBP12 interacting protein 37 | chr3:20056848-20059396 FORWARD LENGTH=330;; (*ITAG) Solyc03g112520.2.1 (e_value=1e-128) genomic_reference:SL2.40ch03 gene_region:56959636-56967859 transcript_region:SL2.40ch03:56959636..56967859- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing regulator WTAP (AHRD V1 *-*- B5X100_SALSA)"; GO:0005515 NbS00001903g0019.1 protein AED:0.61 eAED:0.61 QI:43|0|0|0.4|0.5|0.6|5|0|194; (*ITAG) Solyc00g125580.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:16625580-16626763 transcript_region:SL2.40ch00:16625580..16626763- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001903g0018.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.5|0|0.5|2|0|78 NbS00021158g0002.1 protein AED:0.40 eAED:0.40 QI:27|0.6|0.5|1|1|1|6|0|236; (*GB) gi|359477292|ref|XP_002276298.2| (e_value=3e-80) PREDICTED: protein ALWAYS EARLY 3-like [Vitis vinifera];; (*SWP) sp|Q6A332|ALY3_ARATH (e_value=1e-67) Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1;; (*TAIR) AT3G21430.2 (e_value=1e-68) | Symbols: ATALY3, ALY3 | DNA binding | chr3:7544800-7552841 REVERSE LENGTH=1132;; (*ITAG) Solyc01g067560.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:68741651-68761610 transcript_region:SL2.40ch01:68741651..68761610- go_terms:GO:0003677 functional_description:"Always early protein 3 (AHRD V1 **-- D7L0S7_ARALY); contains Interpro domain(s) IPR010561 DIRP "; GO:0003677 NbS00048060g0002.1 protein AED:0.32 eAED:0.46 QI:0|0.5|0.6|1|1|1|5|0|254; (*GB) gi|76160947|gb|ABA40437.1| (e_value=9e-108) 40S ribosomal protein S7-like protein [Solanum tuberosum];; (*SWP) sp|Q9C514|RS71_ARATH (e_value=4e-92) 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=3e-93) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc03g119360.2.1 (e_value=3e-110) genomic_reference:SL2.40ch03 gene_region:62044635-62047323 transcript_region:SL2.40ch03:62044635..62047323- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0032183,GO:0003735 NbS00007356g0004.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|472; (*GB) gi|225459394|ref|XP_002285816.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At1g22040 [Vitis vinifera];; (*SWP) sp|Q9LM55|FBK8_ARATH (e_value=0.0) F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1;; (*TAIR) AT1G22040.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:7768370-7769797 FORWARD LENGTH=475;; (*ITAG) Solyc01g104980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85060063-85062095 transcript_region:SL2.40ch01:85060063..85062095- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00007356g0013.1 protein AED:0.22 eAED:0.22 QI:615|1|1|1|0.81|0.75|12|568|616; (*GB) gi|315258229|gb|ADT91693.1| (e_value=0.0) BRI1-associated receptor kinase 1 [Nicotiana attenuata];; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT4G33430.1 (e_value=0.0) | Symbols: BAK1, RKS10, SERK3, ELG, ATSERK3, ATBAK1 | BRI1-associated receptor kinase | chr4:16086654-16090288 REVERSE LENGTH=615;; (*ITAG) Solyc01g104970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85050880-85059382 transcript_region:SL2.40ch01:85050880..85059382+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007356g0015.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.5|0|0|2|0|155; (*ITAG) Solyc11g039970.1.1 (e_value=7e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016807g0007.1 protein AED:0.33 eAED:0.40 QI:0|0|0|1|0.5|0.66|3|0|315; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=1e-167) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P07369|CB2G_SOLLC (e_value=2e-168) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-151) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=1e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00016807g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|4|0|122; (*GB) gi|302143545|emb|CBI22106.3| (e_value=4e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|P04783|CB25_PETSP (e_value=4e-41) Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1;; (*TAIR) AT1G29920.1 (e_value=3e-34) | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10475089-10475892 REVERSE LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=6e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00059850g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|329; (*GB) gi|1710401|sp|P49730.1|RIR2_TOBAC (e_value=0.0) RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit;; (*SWP) sp|P49730|RIR2_TOBAC (e_value=0.0) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G27060.1 (e_value=0.0) | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332;; (*ITAG) Solyc02g094160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:49359009-49359998 transcript_region:SL2.40ch02:49359009..49359998+ go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00059850g0006.1 protein AED:0.32 eAED:0.32 QI:85|0.75|0.6|1|1|1|5|0|328; (*GB) gi|225451465|ref|XP_002270554.1| (e_value=3e-95) PREDICTED: zinc finger protein 511 [Vitis vinifera];; (*SWP) sp|Q7ZZ00|ZN511_DANRE (e_value=2e-24) Zinc finger protein 511 OS=Danio rerio GN=znf511 PE=2 SV=1;; (*TAIR) AT5G14140.1 (e_value=3e-80) | Symbols: | zinc ion binding;nucleic acid binding;zinc ion binding | chr5:4561539-4563513 FORWARD LENGTH=264;; (*ITAG) Solyc02g094170.2.1 (e_value=2e-110) genomic_reference:SL2.40ch02 gene_region:49360574-49364255 transcript_region:SL2.40ch02:49360574..49364255- go_terms:GO:0003676 functional_description:"Zinc finger protein 511 (AHRD V1 ***- B6T3C9_MAIZE); contains Interpro domain(s) IPR015880 Zinc finger, C2H2-like "; GO:0003676 NbS00029572g0007.1 protein AED:0.00 eAED:0.00 QI:468|1|1|1|1|1|2|367|198 NbS00029572g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|224077864|ref|XP_002305442.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=8e-22) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT4G34590.1 (e_value=1e-42) | Symbols: ATB2, GBF6, AtbZIP11, BZIP11 | G-box binding factor 6 | chr4:16522449-16522928 FORWARD LENGTH=159;; (*ITAG) Solyc02g084860.1.1 (e_value=1e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42509369-42509803 transcript_region:SL2.40ch02:42509369..42509803- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* C0KYN1_SOLLC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00016898g0011.1 protein AED:0.07 eAED:0.07 QI:166|0|0.5|1|1|1|4|171|249; (*GB) gi|60459397|gb|AAX20044.1| (e_value=2e-102) probable glutathione-S-transferase [Capsicum annuum];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=1e-99) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=5e-62) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011550.2.1 (e_value=6e-98) genomic_reference:SL2.40ch09 gene_region:4837594-4838668 transcript_region:SL2.40ch09:4837594..4838668+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00016898g0005.1 protein AED:0.09 eAED:0.09 QI:165|0.75|0.6|1|1|1|5|159|197; (*GB) gi|351721446|ref|NP_001238489.1| (e_value=1e-84) uncharacterized protein LOC100499951 [Glycine max];; (*TAIR) AT3G53990.1 (e_value=1e-76) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:19989658-19991019 REVERSE LENGTH=160;; (*ITAG) Solyc09g011660.2.1 (e_value=3e-96) genomic_reference:SL2.40ch09 gene_region:4909289-4910765 transcript_region:SL2.40ch09:4909289..4910765- go_terms:GO:0006950 functional_description:"Universal stress protein 1 (AHRD V1 ***- B0YQX0_GOSAR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00016898g0014.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|210|143; (*GB) gi|60459397|gb|AAX20044.1| (e_value=6e-63) probable glutathione-S-transferase [Capsicum annuum];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=5e-64) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=8e-31) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011550.2.1 (e_value=3e-66) genomic_reference:SL2.40ch09 gene_region:4837594-4838668 transcript_region:SL2.40ch09:4837594..4838668+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00016898g0023.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|205; (*GB) gi|359481716|ref|XP_002275657.2| (e_value=7e-58) PREDICTED: glutathione S-transferase U8-like [Vitis vinifera];; (*SWP) sp|Q9SR36|GSTU8_ARATH (e_value=1e-54) Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=8e-56) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011650.2.1 (e_value=8e-60) genomic_reference:SL2.40ch09 gene_region:4903272-4905768 transcript_region:SL2.40ch09:4903272..4905768+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** D8UY87_GLYSO); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364,GO:0043295 NbS00016898g0018.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0.25|1|0.33|0.5|4|211|255; (*GB) gi|350538421|ref|NP_001234086.1| (e_value=4e-48) uncharacterized protein LOC543814 [Solanum lycopersicum];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=1e-45) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=1e-22) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011640.2.1 (e_value=5e-52) genomic_reference:SL2.40ch09 gene_region:4893328-4894820 transcript_region:SL2.40ch09:4893328..4894820+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00016898g0021.1 protein AED:0.41 eAED:0.56 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00029931g0005.1 protein AED:0.26 eAED:0.27 QI:0|0.33|0.25|1|0.33|0.75|4|0|634; (*GB) gi|255583933|ref|XP_002532714.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=0.0) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00006889g0004.1 protein AED:0.12 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|141; (*GB) gi|388514249|gb|AFK45186.1| (e_value=2e-28) unknown [Lotus japonicus];; (*SWP) sp|Q43766|NLTP3_HORVU (e_value=3e-24) Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1;; (*TAIR) AT5G59310.1 (e_value=8e-24) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112;; (*ITAG) Solyc01g081600.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:73302645-73303958 transcript_region:SL2.40ch01:73302645..73303958- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6E0V1_NICGL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00006889g0009.1 protein AED:0.16 eAED:0.19 QI:0|0.5|0|1|0.5|0.66|3|0|613; (*GB) gi|350540008|ref|NP_001234608.1| (e_value=0.0) beta-hexosaminidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|P43077|HEX1_CANAX (e_value=2e-114) Beta-hexosaminidase OS=Candida albicans GN=HEX1 PE=1 SV=1;; (*TAIR) AT1G05590.1 (e_value=0.0) | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2 | chr1:1669871-1671686 FORWARD LENGTH=580;; (*ITAG) Solyc01g081610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73313897-73316705 transcript_region:SL2.40ch01:73313897..73316705- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase 1 (AHRD V1 **** D3TI69_SOLLC); contains Interpro domain(s) IPR015883 Glycoside hydrolase, family 20, catalytic core "; GO:0016231 NbS00060811g0001.1 protein AED:0.33 eAED:0.33 QI:241|1|1|1|0.66|0.57|7|465|204; (*GB) gi|225428904|ref|XP_002285375.1| (e_value=8e-93) PREDICTED: reticulon family protein-like [Vitis vinifera];; (*SWP) sp|Q9LT71|RTNLK_ARATH (e_value=1e-68) Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1;; (*TAIR) AT3G19460.1 (e_value=1e-69) | Symbols: | Reticulon family protein | chr3:6747600-6748904 FORWARD LENGTH=200;; (*ITAG) Solyc01g107620.2.1 (e_value=9e-131) genomic_reference:SL2.40ch01 gene_region:86871262-86877432 transcript_region:SL2.40ch01:86871262..86877432+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7L3K1_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00013115g0003.1 protein AED:0.19 eAED:0.19 QI:3|0.33|0.5|1|1|1|4|273|152; (*GB) gi|357125783|ref|XP_003564569.1| (e_value=1e-85) PREDICTED: 40S ribosomal protein S15a-1-like [Brachypodium distachyon];; (*SWP) sp|P42798|R15A1_ARATH (e_value=7e-87) 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2;; (*TAIR) AT5G59850.1 (e_value=5e-88) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc03g121370.2.1 (e_value=4e-39) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00018079g0005.1 protein AED:0.26 eAED:0.27 QI:46|0|0.5|1|1|1|2|1834|89 NbS00018079g0001.1 protein AED:0.29 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|553; (*GB) gi|225442928|ref|XP_002265258.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Vitis vinifera];; (*SWP) sp|Q9FK93|PP406_ARATH (e_value=3e-165) Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1;; (*TAIR) AT5G39680.1 (e_value=3e-166) | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:15884236-15886368 REVERSE LENGTH=710;; (*ITAG) Solyc11g065250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47710375-47712495 transcript_region:SL2.40ch11:47710375..47712495+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00018079g0007.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.66|1|1|3|0|141; (*GB) gi|359479239|ref|XP_002274937.2| (e_value=8e-34) PREDICTED: uncharacterized protein LOC100260139 [Vitis vinifera];; (*TAIR) AT5G12400.1 (e_value=2e-25) | Symbols: | DNA binding;zinc ion binding;DNA binding | chr5:4013813-4021018 FORWARD LENGTH=1602;; (*ITAG) Solyc11g065160.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47577341-47583345 transcript_region:SL2.40ch11:47577341..47583345+ go_terms:GO:0008270 functional_description:"PHD finger transcription factor-like protein (AHRD V1 ***- Q69Q09_ORYSJ); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00018079g0002.1 protein AED:0.87 eAED:1.00 QI:0|0|0|1|1|1|3|0|184; (*GB) gi|45935140|gb|AAS79598.1| (e_value=8e-30) hypothetical protein [Ipomoea trifida];; (*TAIR) AT2G27900.2 (e_value=1e-16) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00020390g0004.1 protein AED:0.12 eAED:0.12 QI:265|0.85|0.87|1|0.85|0.75|8|657|451; (*GB) gi|47824943|gb|AAT38717.1| (e_value=0.0) hypothetical protein SDM1_41t00007 [Solanum demissum];; (*TAIR) AT2G02910.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr2:847335-849371 REVERSE LENGTH=460;; (*ITAG) Solyc05g007430.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2009889-2015144 transcript_region:SL2.40ch05:2009889..2015144- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00006972g0007.1 protein AED:0.19 eAED:0.19 QI:5|1|0|1|1|0.5|2|0|464; (*GB) gi|147783406|emb|CAN75218.1| (e_value=0.0) hypothetical protein VITISV_003519 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=3e-53) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.2 (e_value=3e-143) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495102 FORWARD LENGTH=495;; (*ITAG) Solyc12g014600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5600467-5603988 transcript_region:SL2.40ch12:5600467..5603988- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00006972g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|225460783|ref|XP_002274753.1| (e_value=3e-179) PREDICTED: uncharacterized protein LOC100262283 [Vitis vinifera];; (*TAIR) AT5G55530.2 (e_value=5e-154) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=4e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00002971g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0.33|1|0|0.33|3|77|879; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=8e-82) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=1e-74) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc04g007070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:791050-796086 transcript_region:SL2.40ch04:791050..796086+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00048440g0002.1 protein AED:0.62 eAED:0.80 QI:38|0|0.33|0.66|1|1|3|0|100 NbS00046455g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0|0.75|1|1|4|0|313; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=6e-168) strictosidine synthase, putative [Ricinus communis];; (*SWP) sp|Q803F5|APMAP_DANRE (e_value=7e-44) Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1;; (*TAIR) AT1G08470.1 (e_value=6e-154) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00047906g0013.1 protein AED:0.57 eAED:0.57 QI:0|0.33|0.25|1|0.33|0.5|4|15|128 NbS00047906g0015.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|0.66|1|0.33|3|0|605; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=6e-141) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=4e-142) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc10g086030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64334549-64337457 transcript_region:SL2.40ch10:64334549..64337457- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00047906g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|183|171; (*GB) gi|77999293|gb|ABB16993.1| (e_value=3e-86) unknown [Solanum tuberosum];; (*SWP) sp|P46297|RS23_FRAAN (e_value=2e-86) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=8e-84) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=6e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00023592g0011.1 protein AED:0.12 eAED:0.12 QI:26|0.5|0.44|0.88|0.37|0.33|9|264|591; (*GB) gi|297734942|emb|CBI17176.3| (e_value=1e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8T1P1|Y3453_DICDI (e_value=2e-27) Uncharacterized protein DDB_G0273453/DDB_G0273565 OS=Dictyostelium discoideum GN=DDB_G0273453 PE=4 SV=2;; (*TAIR) AT5G60760.1 (e_value=3e-101) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24438465-24442004 FORWARD LENGTH=738;; (*ITAG) Solyc11g069780.1.1 (e_value=3e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51488633-51493806 transcript_region:SL2.40ch11:51488633..51493806- functional_description:"2-phosphoglycerate kinase (AHRD V1 *-*- D9PV08_METTM)"; NbS00001537g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.9|0.81|11|177|522; (*GB) gi|5081555|gb|AAD39439.1|AF132001_1 (e_value=0.0) PHAP2A protein [Petunia x hybrida];; (*SWP) sp|P47927|AP2_ARATH (e_value=5e-116) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=4e-117) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc02g093150.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48655673-48658630 transcript_region:SL2.40ch02:48655673..48658630+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00032939g0009.1 protein AED:0.20 eAED:0.20 QI:2|0.73|0.65|0.95|0.73|0.75|20|0|1714; (*GB) gi|224127888|ref|XP_002329202.1| (e_value=0.0) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q7TPQ3|SHPRH_MOUSE (e_value=1e-84) E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1;; (*TAIR) AT2G40770.1 (e_value=0.0) | Symbols: | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding | chr2:17013535-17021315 REVERSE LENGTH=1664;; (*ITAG) Solyc03g095680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:50296179-50312535 transcript_region:SL2.40ch03:50296179..50312535+ go_terms:GO:0005923,GO:0005524,GO:0008270 functional_description:"SNF2 helicase (AHRD V1 *--- D7FHS8_ECTSI); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005923,GO:0005524,GO:0008270 NbS00038810g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|187; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=7e-117) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-101) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-102) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=1e-115) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00038810g0011.1 protein AED:0.20 eAED:0.22 QI:0|0.87|0.88|1|0.87|0.88|9|604|613; (*GB) gi|255569968|ref|XP_002525947.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-40) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G30300.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:11921390-11924254 REVERSE LENGTH=677;; (*ITAG) Solyc03g046470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16871256-16881175 transcript_region:SL2.40ch03:16871256..16881175- functional_description:"Auxin-independent growth promoter protein-like (AHRD V1 **-- Q9LI68_ARATH); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00018155g0018.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.42|0.85|0.83|0.85|7|0|450; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=0.0) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=3e-165) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=2e-173) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc03g120650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63032133-63035294 transcript_region:SL2.40ch03:63032133..63035294- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00018155g0020.1 protein AED:0.00 eAED:0.00 QI:205|0.5|0.66|1|0.5|0.66|3|498|459; (*GB) gi|305379592|gb|ADM48810.1| (e_value=0.0) hydroxyphenylpyruvate reductase [Perilla frutescens];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=5e-55) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=1e-162) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc03g120670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63038516-63041258 transcript_region:SL2.40ch03:63038516..63041258+ go_terms:GO:0042802 functional_description:"D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (AHRD V1 **** C6BAQ7_RHILS); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0042802 NbS00018155g0022.1 protein AED:0.09 eAED:0.10 QI:0|0.66|0.25|0.75|1|1|4|0|271; (*GB) gi|302756183|ref|XP_002961515.1| (e_value=1e-83) hypothetical protein SELMODRAFT_77725 [Selaginella moellendorffii];; (*SWP) sp|Q9LSP0|PER29_ARATH (e_value=3e-73) Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2;; (*TAIR) AT3G17070.1 (e_value=2e-74) | Symbols: | Peroxidase family protein | chr3:5821048-5823165 FORWARD LENGTH=339;; (*ITAG) Solyc09g072700.2.1 (e_value=7e-65) genomic_reference:SL2.40ch09 gene_region:60809802-60811782 transcript_region:SL2.40ch09:60809802..60811782- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 57 (AHRD V1 **** D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00018155g0021.1 protein AED:0.15 eAED:0.20 QI:0|0.5|0.66|1|1|1|3|297|115; (*GB) gi|397555|emb|CAA43841.1| (e_value=1e-42) photosystem I psaH protein [Nicotiana sylvestris];; (*SWP) sp|O04006|PSAH_BRARA (e_value=2e-37) Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1;; (*TAIR) AT1G52230.1 (e_value=2e-38) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00018155g0019.1 protein AED:0.28 eAED:0.28 QI:285|1|1|1|1|1|3|220|310; (*GB) gi|225442597|ref|XP_002284456.1| (e_value=4e-141) PREDICTED: uncharacterized protein LOC100261724 [Vitis vinifera];; (*TAIR) AT1G45688.1 (e_value=4e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342;; (*ITAG) Solyc03g120710.2.1 (e_value=3e-176) genomic_reference:SL2.40ch03 gene_region:63062243-63065253 transcript_region:SL2.40ch03:63062243..63065253+ functional_description:"Harpin-induced protein (AHRD V1 **-- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00022963g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.9|0.81|1|0.6|0.54|11|195|640; (*GB) gi|225440787|ref|XP_002281618.1| (e_value=0.0) PREDICTED: lysosomal Pro-X carboxypeptidase-like [Vitis vinifera];; (*SWP) sp|Q5RBU7|PCP_PONAB (e_value=4e-133) Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1;; (*TAIR) AT2G24280.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc09g010220.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3606323-3611596 transcript_region:SL2.40ch09:3606323..3611596+ go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00022963g0015.1 protein AED:0.21 eAED:0.21 QI:20|0.83|0.85|1|0.83|0.85|7|229|495; (*GB) gi|16903351|gb|AAL30453.1|AF362948_1 (e_value=0.0) endo-beta-1,4-glucanase precursor [Nicotiana tabacum];; (*SWP) sp|Q9CAC1|GUN8_ARATH (e_value=0.0) Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1;; (*TAIR) AT1G70710.1 (e_value=0.0) | Symbols: ATGH9B1, CEL1, GH9B1 | glycosyl hydrolase 9B1 | chr1:26659356-26662962 REVERSE LENGTH=492;; (*ITAG) Solyc09g010210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3596732-3601979 transcript_region:SL2.40ch09:3596732..3601979+ go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6TRZ3_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00037007g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.25|1|0.33|0.25|4|0|168; (*GB) gi|389986111|gb|AFL46173.1| (e_value=1e-30) jasmonate ZIM domain protein h [Nicotiana attenuata];; (*SWP) sp|Q9S7M2|TI10B_ARATH (e_value=2e-24) Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1;; (*TAIR) AT1G74950.1 (e_value=1e-25) | Symbols: JAZ2, TIFY10B | TIFY domain/Divergent CCT motif family protein | chr1:28148919-28150258 REVERSE LENGTH=249;; (*ITAG) Solyc12g049400.1.1 (e_value=5e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46405840-46409136 transcript_region:SL2.40ch12:46405840..46409136+ go_terms:GO:0005515 functional_description:"Protein TIFY 3B (AHRD V1 *--- TIF3B_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00058127g0007.1 protein AED:0.11 eAED:0.19 QI:0|0.25|0.4|1|0.25|0.2|5|0|285; (*ITAG) Solyc02g005360.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00058447g0003.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|225428334|ref|XP_002279974.1| (e_value=7e-155) PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=4e-144) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=3e-145) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=2e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058447g0001.1 protein AED:0.06 eAED:0.06 QI:495|1|0.5|1|0|0|2|0|105; (*GB) gi|255546694|ref|XP_002514406.1| (e_value=2e-18) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=2e-17) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=2e-18) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=4e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00052530g0007.1 protein AED:0.31 eAED:0.33 QI:0|0.5|0.6|1|1|1|5|430|332; (*GB) gi|225461959|ref|XP_002270063.1| (e_value=2e-118) PREDICTED: uncharacterized protein LOC100258311 [Vitis vinifera];; (*SWP) sp|Q6BPT6|AIM32_DEBHA (e_value=7e-14) Altered inheritance of mitochondria protein 32 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM32 PE=3 SV=2;; (*TAIR) AT4G26620.1 (e_value=6e-106) | Symbols: | Sucrase/ferredoxin-like family protein | chr4:13427599-13429877 REVERSE LENGTH=443;; (*ITAG) Solyc07g065690.2.1 (e_value=2e-180) genomic_reference:SL2.40ch07 gene_region:64588061-64591664 transcript_region:SL2.40ch07:64588061..64591664+ functional_description:"Sucrose cleavage protein-like (AHRD V1 **-- B6TKT6_MAIZE); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00052530g0008.1 protein AED:0.31 eAED:0.31 QI:461|0.88|0.6|1|1|1|10|0|321; (*GB) gi|225461961|ref|XP_002270197.1| (e_value=5e-175) PREDICTED: SEC14-like protein 5 [Vitis vinifera];; (*SWP) sp|P45816|SEC14_YARLI (e_value=2e-12) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT1G55840.1 (e_value=9e-166) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:20873891-20876018 FORWARD LENGTH=325;; (*ITAG) Solyc11g012790.1.1 (e_value=2e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5558186-5562111 transcript_region:SL2.40ch11:5558186..5562111- functional_description:"SEC14-like protein 1 (AHRD V1 **-- B6TAH4_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00058940g0004.1 protein AED:0.11 eAED:0.11 QI:121|1|0.90|1|0.9|0.90|11|0|557; (*GB) gi|225444599|ref|XP_002274576.1| (e_value=0.0) PREDICTED: protein Red isoform 1 [Vitis vinifera];; (*SWP) sp|Q66HG8|RED_RAT (e_value=1e-41) Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1;; (*TAIR) AT2G26460.1 (e_value=0.0) | Symbols: SMU2 | RED family protein | chr2:11255049-11258913 REVERSE LENGTH=585;; (*ITAG) Solyc07g017490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7378323-7382780 transcript_region:SL2.40ch07:7378323..7382780+ go_terms:GO:0005634 functional_description:"Red family protein (AHRD V1 ***- D7LDI9_ARALY); contains Interpro domain(s) IPR012916 RED-like, N-terminal "; GO:0005634 NbS00020653g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.7|1|0.77|0.8|10|0|472; (*GB) gi|255568621|ref|XP_002525284.1| (e_value=3e-154) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G67610.1 (e_value=6e-134) | Symbols: | Uncharacterized conserved protein (DUF2215) | chr5:26961224-26963614 REVERSE LENGTH=486;; (*ITAG) Solyc02g064580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30264429-30273186 transcript_region:SL2.40ch02:30264429..30273186+ functional_description:"Rhodopsin-like receptor (AHRD V1 ***- B6TUA3_MAIZE); contains Interpro domain(s) IPR019358 Protein of unknown function DUF2215 "; NbS00006498g0001.1 protein AED:0.33 eAED:0.47 QI:74|0.9|0.90|1|0.4|0.54|11|770|218; (*GB) gi|359490010|ref|XP_002275133.2| (e_value=1e-31) PREDICTED: altered inheritance rate of mitochondria protein 25-like [Vitis vinifera];; (*ITAG) Solyc03g006460.2.1 (e_value=1e-52) genomic_reference:SL2.40ch03 gene_region:1045981-1053451 transcript_region:SL2.40ch03:1045981..1053451- go_terms:GO:0017128 functional_description:"Phospholipid scramblase 1 (AHRD V1 **** A3LVQ7_PICST); contains Interpro domain(s) IPR005552 Scramblase "; GO:0017128 NbS00052951g0001.1 protein AED:0.07 eAED:0.07 QI:237|1|0.75|1|0|0|4|181|582; (*GB) gi|365222898|gb|AEW69801.1| (e_value=0.0) Hop-interacting protein THI039 [Solanum lycopersicum];; (*SWP) sp|Q69VG1|CIGR1_ORYSJ (e_value=0.0) Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=1e-173) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc12g005340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:211757-213433 transcript_region:SL2.40ch12:211757..213433- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00052951g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|196; (*GB) gi|3024440|sp|P93395.1|PSB6_TOBAC (e_value=1e-74) RecName: Full=Proteasome subunit beta type-6; AltName: Full=Proteasome delta chain; AltName: Full=Tobacco cryptogein-induced protein 7; Short=tcI 7; Flags: Precursor;; (*SWP) sp|P93395|PSB6_TOBAC (e_value=3e-76) Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G31300.3 (e_value=5e-73) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233;; (*ITAG) Solyc07g016200.2.1 (e_value=3e-77) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00054748g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.75|1|1|4|961|152 NbS00054748g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|122; (*GB) gi|871485|emb|CAA58733.1| (e_value=1e-62) PAR-1a [Nicotiana tabacum];; (*TAIR) AT5G52390.1 (e_value=1e-31) | Symbols: | PAR1 protein | chr5:21264281-21265173 REVERSE LENGTH=195;; (*ITAG) Solyc03g025670.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:7490876-7492241 transcript_region:SL2.40ch03:7490876..7492241+ functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00023528g0003.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|208; (*GB) gi|225438710|ref|XP_002282456.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100250717 [Vitis vinifera];; (*TAIR) AT4G33985.1 (e_value=1e-46) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc02g090840.2.1 (e_value=2e-79) genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00029043g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.5|1|1|1|4|191|502; (*GB) gi|147860847|emb|CAN83157.1| (e_value=0.0) hypothetical protein VITISV_022552 [Vitis vinifera];; (*SWP) sp|Q7T0U6|SCM1B_XENLA (e_value=2e-99) Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-b PE=2 SV=1;; (*TAIR) AT5G51050.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:20753381-20755714 FORWARD LENGTH=487;; (*ITAG) Solyc06g068720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38986529-38993423 transcript_region:SL2.40ch06:38986529..38993423- go_terms:GO:0005509 functional_description:"Calcium-binding mitochondrial carrier protein SCaMC-1 (AHRD V1 **** B5X2X8_SALSA); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0005509 NbS00029043g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.25|0.75|0.33|0.75|4|0|106; (*GB) gi|296082250|emb|CBI21255.3| (e_value=3e-32) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64650|RS271_ARATH (e_value=2e-32) 40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1;; (*TAIR) AT2G45710.1 (e_value=1e-33) | Symbols: | Zinc-binding ribosomal protein family protein | chr2:18831243-18831999 FORWARD LENGTH=84;; (*ITAG) Solyc06g068710.2.1 (e_value=8e-48) genomic_reference:SL2.40ch06 gene_region:38984105-38985212 transcript_region:SL2.40ch06:38984105..38985212- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- C6SWV6_SOYBN); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00008507g0006.1 protein AED:0.01 eAED:0.01 QI:50|1|1|1|1|1|2|112|361; (*GB) gi|225446491|ref|XP_002278211.1| (e_value=1e-162) PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera];; (*SWP) sp|Q6VMW0|Q8OMT_MENPI (e_value=7e-120) 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=9e-62) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc03g097700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53476300-53478085 transcript_region:SL2.40ch03:53476300..53478085- go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00008507g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|214; (*GB) gi|224072612|ref|XP_002303806.1| (e_value=2e-76) predicted protein [Populus trichocarpa];; (*TAIR) AT3G24020.1 (e_value=1e-71) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:8678827-8679558 FORWARD LENGTH=243;; (*ITAG) Solyc12g097090.1.1 (e_value=1e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64071732-64073176 transcript_region:SL2.40ch12:64071732..64073176+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q0WPQ6_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00036242g0003.1 protein AED:0.13 eAED:0.13 QI:210|0.75|0.6|1|0.75|0.8|5|476|231; (*GB) gi|302142313|emb|CBI19516.3| (e_value=9e-35) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G42900.3 (e_value=7e-24) | Symbols: | cold regulated gene 27 | chr5:17198366-17199712 REVERSE LENGTH=245;; (*ITAG) Solyc04g078880.2.1 (e_value=1e-101) genomic_reference:SL2.40ch04 gene_region:61132632-61135034 transcript_region:SL2.40ch04:61132632..61135034+ functional_description:"Genomic DNA chromosome 5 P1 clone MBD2 (AHRD V1 ***- Q9FMM9_ARATH)"; NbS00017876g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|356551564|ref|XP_003544144.1| (e_value=4e-57) PREDICTED: uncharacterized protein LOC100775680 [Glycine max];; (*TAIR) AT2G04850.1 (e_value=2e-43) | Symbols: | Auxin-responsive family protein | chr2:1704298-1705608 FORWARD LENGTH=404;; (*ITAG) Solyc07g048050.1.1 (e_value=7e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56559012-56560223 transcript_region:SL2.40ch07:56559012..56560223- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6SK92_MAIZE); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; NbS00017876g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|13785207|emb|CAC37355.1| (e_value=1e-46) putative membrane protein [Solanum tuberosum];; (*TAIR) AT3G59070.1 (e_value=2e-21) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:21832364-21834514 REVERSE LENGTH=466;; (*ITAG) Solyc07g048070.2.1 (e_value=4e-51) genomic_reference:SL2.40ch07 gene_region:56576167-56578449 transcript_region:SL2.40ch07:56576167..56578449+ functional_description:"Membrane protein (AHRD V1 **-- B6U5U8_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00034024g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|405 NbS00058779g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|275; (*GB) gi|62867576|emb|CAI84653.1| (e_value=1e-143) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|O80920|PYL4_ARATH (e_value=3e-78) Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1;; (*TAIR) AT2G38310.1 (e_value=2e-79) | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207;; (*ITAG) Solyc10g085310.1.1 (e_value=1e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63858278-63858919 transcript_region:SL2.40ch10:63858278..63858919+ functional_description:"Abscisic acid receptor PYL4 (AHRD V1 **-- PYL4_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00055601g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.5|0.4|5|409|173; (*GB) gi|297741557|emb|CBI32689.3| (e_value=4e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46297|RS23_FRAAN (e_value=7e-99) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=3e-96) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=2e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00055601g0007.1 protein AED:0.10 eAED:0.10 QI:173|1|1|1|1|1|6|330|375; (*GB) gi|116242308|gb|ABJ89813.1| (e_value=0.0) wound-induced protein kinase [Nicotiana attenuata];; (*SWP) sp|Q39023|MPK3_ARATH (e_value=0.0) Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2;; (*TAIR) AT3G45640.1 (e_value=0.0) | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activated protein kinase 3 | chr3:16756918-16758476 FORWARD LENGTH=370;; (*ITAG) Solyc06g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:192235-195321 transcript_region:SL2.40ch06:192235..195321+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00027175g0010.1 protein AED:0.07 eAED:0.07 QI:120|1|0.5|1|1|1|2|0|635; (*GB) gi|359490866|ref|XP_002267505.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g39030-like [Vitis vinifera];; (*SWP) sp|Q9FID5|Y5393_ARATH (e_value=2e-88) Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1;; (*TAIR) AT1G66920.1 (e_value=8e-103) | Symbols: | Protein kinase superfamily protein | chr1:24965410-24967432 REVERSE LENGTH=609;; (*ITAG) Solyc03g083470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46904470-46906666 transcript_region:SL2.40ch03:46904470..46906666- go_terms:GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0006468 NbS00027175g0011.1 protein AED:0.29 eAED:0.33 QI:0|0.77|0.6|1|0.66|0.6|10|446|389; (*GB) gi|350534638|ref|NP_001234407.1| (e_value=0.0) SPM1 protein [Solanum lycopersicum];; (*SWP) sp|Q94BN2|SPSY_ARATH (e_value=3e-177) Spermine synthase OS=Arabidopsis thaliana GN=SPMS PE=1 SV=1;; (*TAIR) AT5G53120.5 (e_value=2e-178) | Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359;; (*ITAG) Solyc03g007240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1795042-1800986 transcript_region:SL2.40ch03:1795042..1800986- go_terms:GO:0004766 functional_description:"Spermidine synthase 1 (AHRD V1 **** B6TA19_MAIZE); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00011524g0003.1 protein AED:0.32 eAED:0.32 QI:458|0.66|0.75|1|1|1|4|0|226; (*GB) gi|342730594|gb|AEL33280.1| (e_value=5e-107) putative auxin-induced protein [Camellia sinensis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-32) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G19185.1 (e_value=7e-100) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:10489201-10491488 REVERSE LENGTH=398;; (*ITAG) Solyc08g075470.2.1 (e_value=9e-121) genomic_reference:SL2.40ch08 gene_region:56785411-56792428 transcript_region:SL2.40ch08:56785411..56792428+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00006834g0112.1 protein AED:0.12 eAED:0.14 QI:0|1|0.66|1|1|1|6|0|476 NbS00006834g0115.1 protein AED:0.15 eAED:0.15 QI:169|0.88|0.9|1|1|0.9|10|512|864 NbS00006834g0113.1 protein AED:0.19 eAED:0.21 QI:0|0|0.33|1|0|0.66|3|1372|98 NbS00006834g0114.1 protein AED:0.30 eAED:0.30 QI:263|1|1|1|0.75|0.8|5|373|169 NbS00016009g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|1|1|6|0|381; (*GB) gi|356558851|ref|XP_003547716.1| (e_value=2e-103) PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Glycine max];; (*SWP) sp|Q99383|HRP1_YEAST (e_value=6e-41) Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1;; (*TAIR) AT5G40490.1 (e_value=1e-96) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:16225483-16227423 FORWARD LENGTH=423;; (*ITAG) Solyc02g093340.2.1 (e_value=2e-139) genomic_reference:SL2.40ch02 gene_region:48818618-48822221 transcript_region:SL2.40ch02:48818618..48822221+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00011819g0005.1 protein AED:0.32 eAED:0.33 QI:0|0.66|0.5|0.9|1|1|10|0|267; (*GB) gi|145323882|ref|NP_001077530.1| (e_value=3e-161) glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana];; (*SWP) sp|P08735|G3PC_MAIZE (e_value=2e-137) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2;; (*TAIR) AT1G13440.2 (e_value=6e-164) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc05g005820.2.1 (e_value=5e-128) genomic_reference:SL2.40ch05 gene_region:648534-651277 transcript_region:SL2.40ch05:648534..651277- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00011819g0112.1 protein AED:0.11 eAED:0.11 QI:134|1|1|1|0.5|0.71|7|77|356 NbS00011819g0111.1 protein AED:0.16 eAED:0.17 QI:132|0.66|0.71|1|0.16|0.28|7|0|284 NbS00011819g0113.1 protein AED:0.31 eAED:0.32 QI:60|0.66|0.42|1|0.33|0.42|7|0|309 NbS00011819g0105.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|121 NbS00007432g0003.1 protein AED:0.46 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC (e_value=2e-40) RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName: Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3B; Flags: Precursor;; (*SWP) sp|Q8L6J1|RPO3B_TOBAC (e_value=5e-42) DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2;; (*TAIR) AT2G24120.2 (e_value=6e-35) | Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10250139-10254530 REVERSE LENGTH=895;; (*ITAG) Solyc07g005930.2.1 (e_value=6e-42) genomic_reference:SL2.40ch07 gene_region:764089-775345 transcript_region:SL2.40ch07:764089..775345+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9IMA6_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00007432g0004.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|156 NbS00007432g0009.1 protein AED:0.46 eAED:0.76 QI:232|0|0.33|1|1|1|3|226|83 NbS00007432g0002.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|1|1|3|0|318 NbS00016248g0010.1 protein AED:0.32 eAED:0.48 QI:106|0.75|0.6|1|0.75|0.8|5|0|164; (*GB) gi|388505568|gb|AFK40850.1| (e_value=5e-75) unknown [Medicago truncatula];; (*SWP) sp|O65743|RL24_CICAR (e_value=5e-75) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT3G53020.1 (e_value=3e-75) | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e family protein | chr3:19660749-19661912 REVERSE LENGTH=163;; (*ITAG) Solyc10g083740.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62828065-62829671 transcript_region:SL2.40ch10:62828065..62829671- go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00016248g0011.1 protein AED:0.39 eAED:0.39 QI:0|1|0.66|1|0|0.66|3|0|293; (*GB) gi|255575471|ref|XP_002528637.1| (e_value=3e-159) ATPP2-A13, putative [Ricinus communis];; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=2e-148) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=2e-149) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc10g083730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62824693-62827560 transcript_region:SL2.40ch10:62824693..62827560+ functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00011121g0005.1 protein AED:0.03 eAED:0.03 QI:859|0.6|0.66|1|0.8|0.66|6|325|472; (*GB) gi|297835736|ref|XP_002885750.1| (e_value=0.0) hypothetical protein ARALYDRAFT_342773 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G04305.1 (e_value=0.0) | Symbols: | Magnesium transporter CorA-like family protein | chr2:1501679-1503448 REVERSE LENGTH=434;; (*ITAG) Solyc08g069000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55288480-55295702 transcript_region:SL2.40ch08:55288480..55295702- functional_description:"Zinc transport protein zntB (AHRD V1 *-*- C4U8N0_YERAL)"; NbS00011121g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|224065631|ref|XP_002301893.1| (e_value=3e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|O80795|Y1652_ARATH (e_value=9e-28) Probable inactive receptor-like protein kinase At1g65250 OS=Arabidopsis thaliana GN=At1g65250 PE=2 SV=1;; (*TAIR) AT3G57740.1 (e_value=3e-34) | Symbols: | Protein kinase superfamily protein | chr3:21392671-21393744 FORWARD LENGTH=357;; (*ITAG) Solyc06g060690.2.1 (e_value=3e-71) genomic_reference:SL2.40ch06 gene_region:35101221-35102882 transcript_region:SL2.40ch06:35101221..35102882- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00011121g0018.1 protein AED:0.33 eAED:0.33 QI:0|0.84|0.8|0.95|0.78|0.85|20|0|741; (*GB) gi|255584037|ref|XP_002532763.1| (e_value=0.0) dynamin, putative [Ricinus communis];; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=0.0) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=0.0) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc01g106050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85782931-85793738 transcript_region:SL2.40ch01:85782931..85793738- go_terms:GO:0042803 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0042803 NbS00011121g0003.1 protein AED:0.37 eAED:0.41 QI:0|0|0|1|1|1|2|0|294; (*GB) gi|296090345|emb|CBI40164.3| (e_value=9e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G12560.2 (e_value=1e-12) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc10g008580.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00011121g0025.1 protein AED:0.15 eAED:0.15 QI:129|1|1|1|0.77|0.8|10|532|390; (*GB) gi|225446088|ref|XP_002269975.1| (e_value=6e-132) PREDICTED: uncharacterized protein LOC100259875 [Vitis vinifera];; (*TAIR) AT5G09390.1 (e_value=7e-94) | Symbols: | CD2-binding protein-related | chr5:2913591-2915803 FORWARD LENGTH=351;; (*ITAG) Solyc04g009060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2618806-2627468 transcript_region:SL2.40ch04:2618806..2627468- functional_description:"CD2 antigen cytoplasmic tail-binding protein 2 (AHRD V1 *--- C1BIJ4_OSMMO)"; NbS00048419g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|255547409|ref|XP_002514762.1| (e_value=1e-26) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=6e-14) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT1G18835.1 (e_value=2e-24) | Symbols: MIF3 | mini zinc finger | chr1:6496106-6496372 REVERSE LENGTH=88;; (*ITAG) Solyc03g116070.1.1 (e_value=1e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59638508-59638759 transcript_region:SL2.40ch03:59638508..59638759- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 3 (Fragment) (AHRD V1 **-- B0LK14_SARHE); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00044482g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|263; (*GB) gi|225443980|ref|XP_002274093.1| (e_value=1e-88) PREDICTED: F-box protein SKIP19 [Vitis vinifera];; (*SWP) sp|Q9M0U9|SKI19_ARATH (e_value=2e-78) F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1;; (*TAIR) AT4G05460.1 (e_value=1e-79) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g006940.2.1 (e_value=2e-133) genomic_reference:SL2.40ch08 gene_region:1501362-1504493 transcript_region:SL2.40ch08:1501362..1504493- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00029156g0007.1 protein AED:0.22 eAED:0.22 QI:93|0.88|0.83|1|0.35|0.33|18|746|458; (*GB) gi|255543060|ref|XP_002512593.1| (e_value=0.0) Glycerol uptake protein, putative [Ricinus communis];; (*SWP) sp|Q09758|YA71_SCHPO (e_value=3e-70) Putative membrane-bound O-acyltransferase C24H6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.01c PE=2 SV=4;; (*TAIR) AT1G57600.1 (e_value=0.0) | Symbols: | MBOAT (membrane bound O-acyl transferase) family protein | chr1:21330729-21334596 REVERSE LENGTH=533;; (*ITAG) Solyc04g055190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52946594-52955402 transcript_region:SL2.40ch04:52946594..52955402+ go_terms:GO:0008374,GO:0005515 functional_description:"Glycerol uptake protein 1 (AHRD V1 **-- B3LHF0_YEAS1); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0008374,GO:0005515 NbS00029156g0010.1 protein AED:0.25 eAED:0.25 QI:74|0.83|0.71|1|0.66|0.85|7|0|611; (*GB) gi|225450417|ref|XP_002276071.1| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera];; (*SWP) sp|Q8VYE4|PTR12_ARATH (e_value=1e-120) Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1;; (*TAIR) AT1G27040.2 (e_value=1e-121) | Symbols: | Major facilitator superfamily protein | chr1:9386893-9389838 REVERSE LENGTH=563;; (*ITAG) Solyc10g039290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20937256-20939892 transcript_region:SL2.40ch10:20937256..20939892- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00009420g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|512; (*GB) gi|350538113|ref|NP_001234327.1| (e_value=0.0) GRAS10 protein [Solanum lycopersicum];; (*SWP) sp|Q9FYR7|SCL8_ARATH (e_value=2e-138) Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1;; (*TAIR) AT5G52510.1 (e_value=1e-139) | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307196-21309118 FORWARD LENGTH=640;; (*ITAG) Solyc03g025170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7005987-7007882 transcript_region:SL2.40ch03:7005987..7007882- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9H3H7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00042352g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|225; (*GB) gi|225435598|ref|XP_002285621.1| (e_value=8e-105) PREDICTED: uncharacterized protein LOC100251931 [Vitis vinifera];; (*TAIR) AT5G19630.1 (e_value=5e-100) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6628147-6629937 REVERSE LENGTH=228;; (*ITAG) Solyc01g006480.2.1 (e_value=5e-129) genomic_reference:SL2.40ch01 gene_region:1074151-1078328 transcript_region:SL2.40ch01:1074151..1078328+ functional_description:"Alpha/beta hydrolase (AHRD V1 ***- Q83AV9_COXBU)"; NbS00000080g0007.1 protein AED:0.05 eAED:0.10 QI:0|0|0|1|0|0.5|2|0|394; (*GB) gi|224126089|ref|XP_002329658.1| (e_value=8e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g018310.2.1 (e_value=3e-23) genomic_reference:SL2.40ch07 gene_region:10071952-10074398 transcript_region:SL2.40ch07:10071952..10074398- functional_description:"Unknown Protein (AHRD V1)"; NbS00006003g0020.1 protein AED:0.05 eAED:0.05 QI:354|1|0.5|1|0|0|2|0|595; (*GB) gi|147853521|emb|CAN78533.1| (e_value=0.0) hypothetical protein VITISV_006310 [Vitis vinifera];; (*SWP) sp|Q55GA4|CDC45_DICDI (e_value=1e-66) Cell division control protein 45 homolog OS=Dictyostelium discoideum GN=cdc45 PE=3 SV=1;; (*TAIR) AT3G25100.1 (e_value=0.0) | Symbols: CDC45 | cell division cycle 45 | chr3:9144292-9146082 FORWARD LENGTH=596;; (*ITAG) Solyc09g059440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:50032854-50034641 transcript_region:SL2.40ch09:50032854..50034641+ go_terms:GO:0005515 functional_description:"CDC45 (Cell division cycle 45)-like protein (AHRD V1 ***- Q9LSG6_ARATH); contains Interpro domain(s) IPR003874 CDC45-like protein "; GO:0005515 NbS00006003g0015.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|2|200|266; (*GB) gi|147788436|emb|CAN63304.1| (e_value=5e-72) hypothetical protein VITISV_002333 [Vitis vinifera];; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=5e-31) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1;; (*TAIR) AT3G25070.1 (e_value=3e-32) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc09g059430.2.1 (e_value=5e-118) genomic_reference:SL2.40ch09 gene_region:50028174-50031148 transcript_region:SL2.40ch09:50028174..50031148+ go_terms:GO:0005515 functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; GO:0005515 NbS00006003g0017.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.71|0.16|0.42|7|0|680; (*GB) gi|359495515|ref|XP_002265720.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LJR6|PP253_ARATH (e_value=2e-147) Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1;; (*TAIR) AT3G25060.1 (e_value=1e-148) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9128516-9130321 FORWARD LENGTH=601;; (*ITAG) Solyc09g059580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50466459-50470194 transcript_region:SL2.40ch09:50466459..50470194- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006003g0021.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|0|0.66|3|0|230; (*GB) gi|224129502|ref|XP_002320602.1| (e_value=3e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48660.1 (e_value=7e-63) | Symbols: | B-cell receptor-associated protein 31-like | chr5:19736986-19738327 FORWARD LENGTH=219;; (*ITAG) Solyc09g059570.2.1 (e_value=4e-115) genomic_reference:SL2.40ch09 gene_region:50463633-50466385 transcript_region:SL2.40ch09:50463633..50466385+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6U1I6_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00006003g0013.1 protein AED:0.35 eAED:0.35 QI:409|0|0.33|0.33|1|1|3|0|127 NbS00019297g0001.1 protein AED:0.12 eAED:0.16 QI:274|0.76|0.88|1|0.76|0.66|18|305|722; (*GB) gi|316937100|gb|ADU60534.1| (e_value=0.0) cullin 1 [Solanum pennellii];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc06g008710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2615845-2621332 transcript_region:SL2.40ch06:2615845..2621332+ go_terms:GO:0030332 functional_description:"Cullin 1B (AHRD V1 ***- Q711G7_TOBAC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00019297g0002.1 protein AED:0.11 eAED:0.11 QI:740|0.66|0.46|0.92|0.83|0.76|13|873|1094; (*GB) gi|359479822|ref|XP_002269412.2| (e_value=2e-117) PREDICTED: uncharacterized protein LOC100254466 [Vitis vinifera];; (*TAIR) AT3G62900.1 (e_value=2e-82) | Symbols: | CW-type Zinc Finger | chr3:23248868-23254810 REVERSE LENGTH=1465;; (*ITAG) Solyc06g008720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2628999-2637520 transcript_region:SL2.40ch06:2628999..2637520- functional_description:"Zinc ion binding protein (AHRD V1 *-*- D7LTA9_ARALY)"; NbS00019297g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.92|1|0.91|1|13|634|767; (*GB) gi|296086606|emb|CBI32241.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY16|PEX6_ARATH (e_value=0.0) Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6 PE=1 SV=1;; (*TAIR) AT1G03000.1 (e_value=0.0) | Symbols: PEX6 | peroxin 6 | chr1:688057-692453 REVERSE LENGTH=941;; (*ITAG) Solyc06g008730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2643190-2651308 transcript_region:SL2.40ch06:2643190..2651308- go_terms:GO:0042623,GO:0005200 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005200 NbS00005013g0004.1 protein AED:0.21 eAED:0.21 QI:240|1|1|1|1|1|8|352|231; (*GB) gi|225444609|ref|XP_002274986.1| (e_value=2e-147) PREDICTED: eukaryotic translation initiation factor 3 subunit K [Vitis vinifera];; (*SWP) sp|Q94HF1|EIF3K_ORYSJ (e_value=4e-131) Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1;; (*TAIR) AT4G33250.1 (e_value=3e-127) | Symbols: EIF3K, TIF3K1, ATTIF3K1 | eukaryotic translation initiation factor 3K | chr4:16039066-16040617 REVERSE LENGTH=226;; (*ITAG) Solyc07g042570.2.1 (e_value=8e-158) genomic_reference:SL2.40ch07 gene_region:53359563-53364641 transcript_region:SL2.40ch07:53359563..53364641+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 11 family protein expressed (AHRD V1 ***- Q10QU7_ORYSJ); contains Interpro domain(s) IPR009374 Translation initiation factor 3, subunit 12, eukaryotic "; GO:0005515 NbS00000358g0012.1 protein AED:0.17 eAED:0.17 QI:461|0.83|0.71|1|0.66|0.85|7|0|344; (*GB) gi|225430460|ref|XP_002285494.1| (e_value=1e-165) PREDICTED: uncharacterized vacuolar membrane protein YML018C [Vitis vinifera];; (*SWP) sp|Q03730|YMB8_YEAST (e_value=6e-32) Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1;; (*TAIR) AT4G32140.1 (e_value=1e-153) | Symbols: | EamA-like transporter family | chr4:15523037-15525195 REVERSE LENGTH=394;; (*ITAG) Solyc08g021960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:10360928-10372570 transcript_region:SL2.40ch08:10360928..10372570- go_terms:GO:0005515,GO:0022857 functional_description:"Thiamine-repressible mitochondrial transporter THI74 (AHRD V1 **-* C6HKW5_AJECH)"; GO:0005515,GO:0022857 NbS00000358g0008.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0.33|3|0|372; (*GB) gi|225735301|gb|ACO25616.1| (e_value=2e-69) NBS-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q9T048|DRL27_ARATH (e_value=4e-39) Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1;; (*TAIR) AT4G27190.1 (e_value=3e-40) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13620977-13623934 REVERSE LENGTH=985;; (*ITAG) Solyc08g007250.1.1 (e_value=8e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1830376-1835999 transcript_region:SL2.40ch08:1830376..1835999- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00000358g0010.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|0|0|2|0|146; (*ITAG) Solyc08g013970.1.1 (e_value=8e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3370576-3373318 transcript_region:SL2.40ch08:3370576..3373318+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00000358g0011.1 protein AED:0.43 eAED:0.49 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|302143209|emb|CBI20504.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G27220.1 (e_value=1e-12) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13633953-13636712 REVERSE LENGTH=919;; (*ITAG) Solyc06g048910.1.1 (e_value=6e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28429688-28434693 transcript_region:SL2.40ch06:28429688..28434693+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00000358g0009.1 protein AED:0.46 eAED:0.74 QI:0|0|0|1|0|0|2|0|84 NbS00021208g0005.1 protein AED:0.11 eAED:0.11 QI:213|1|0.93|1|0.53|0.5|16|2441|409; (*GB) gi|224143559|ref|XP_002324997.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P28734|AATC_DAUCA (e_value=0.0) Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G11520.1 (e_value=0.0) | Symbols: ASP3, YLS4 | aspartate aminotransferase 3 | chr5:3685257-3687721 REVERSE LENGTH=449;; (*ITAG) Solyc08g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54637277-54645402 transcript_region:SL2.40ch08:54637277..54645402- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** B9H920_POPTR); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00021208g0012.1 protein AED:0.17 eAED:0.17 QI:395|0.85|0.62|1|0.57|0.5|8|0|514; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=0.0) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=0.0) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc07g032730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:40595047-40596909 transcript_region:SL2.40ch07:40595047..40596909+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00021208g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|359482588|ref|XP_002279325.2| (e_value=2e-14) PREDICTED: rho guanine nucleotide exchange factor 8-like [Vitis vinifera];; (*ITAG) Solyc07g032730.2.1 (e_value=2e-33) genomic_reference:SL2.40ch07 gene_region:40595047-40596909 transcript_region:SL2.40ch07:40595047..40596909+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00034205g0006.1 protein AED:0.24 eAED:0.27 QI:220|0.85|0.75|1|0.57|0.62|8|545|452; (*GB) gi|18414346|ref|NP_567450.1| (e_value=0.0) SNARE associated Golgi protein [Arabidopsis thaliana];; (*SWP) sp|Q91ZQ0|VMP1_RAT (e_value=4e-63) Vacuole membrane protein 1 OS=Rattus norvegicus GN=Vmp1 PE=1 SV=1;; (*TAIR) AT4G14950.1 (e_value=0.0) | Symbols: | SNARE associated Golgi protein family | chr4:8545517-8547722 FORWARD LENGTH=416;; (*ITAG) Solyc09g075850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62981885-62989442 transcript_region:SL2.40ch09:62981885..62989442- functional_description:"Transmembrane protein 49 (AHRD V1 ***- B6TDW5_MAIZE)"; NbS00005324g0010.1 protein AED:0.10 eAED:0.15 QI:776|0|0.66|1|0|0.33|3|163|67 NbS00005324g0012.1 protein AED:0.18 eAED:0.21 QI:0|0.28|0.12|0.87|0.85|0.75|8|0|388; (*GB) gi|255573386|ref|XP_002527619.1| (e_value=2e-52) Ras-GTPase-activating protein-binding protein, putative [Ricinus communis];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=5e-13) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.1 (e_value=2e-39) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488;; (*ITAG) Solyc05g012240.1.1 (e_value=4e-114) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5517469-5519543 transcript_region:SL2.40ch05:5517469..5519543- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Nuclear transport factor 2 domain containing protein expressed (AHRD V1 **-- Q7Y1L6_ORYSJ); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00005324g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.78|0.6|0.93|0.57|0.6|15|6|629; (*GB) gi|297738097|emb|CBI27298.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BFS9|ASND1_MOUSE (e_value=3e-84) Asparagine synthetase domain-containing protein 1 OS=Mus musculus GN=Asnsd1 PE=2 SV=1;; (*TAIR) AT2G03667.1 (e_value=0.0) | Symbols: | Asparagine synthase family protein | chr2:1114179-1117281 FORWARD LENGTH=610;; (*ITAG) Solyc05g012200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5462850-5468978 transcript_region:SL2.40ch05:5462850..5468978+ go_terms:GO:0042802 functional_description:"Asparagine synthase family protein expressed (AHRD V1 ***- Q2QN88_ORYSJ); contains Interpro domain(s) IPR001962 Asparagine synthase "; GO:0042802 NbS00005324g0013.1 protein AED:0.17 eAED:0.17 QI:165|0.9|1|1|0.9|0.90|11|178|574; (*GB) gi|359484119|ref|XP_002267202.2| (e_value=0.0) PREDICTED: cell division control protein 48 homolog B-like [Vitis vinifera];; (*SWP) sp|Q9ZPR1|CD48B_ARATH (e_value=0.0) Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1;; (*TAIR) AT2G03670.1 (e_value=0.0) | Symbols: CDC48B | cell division cycle 48B | chr2:1117595-1120361 FORWARD LENGTH=603;; (*ITAG) Solyc05g012190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5456884-5462327 transcript_region:SL2.40ch05:5456884..5462327- go_terms:GO:0004176 functional_description:"AAA family ATPase CDC48 subfamily (AHRD V1 **-- A8AAC3_IGNH4); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00042178g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|0.5|0.33|3|0|214; (*GB) gi|297745814|emb|CBI15870.3| (e_value=1e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SJA9|GDL39_ARATH (e_value=2e-81) GDSL esterase/lipase At2g24560 OS=Arabidopsis thaliana GN=At2g24560 PE=2 SV=2;; (*TAIR) AT2G24560.1 (e_value=2e-82) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:10431537-10432933 FORWARD LENGTH=363;; (*ITAG) Solyc04g007440.1.1 (e_value=8e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1108529-1111896 transcript_region:SL2.40ch04:1108529..1111896+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g58430 (AHRD V1 ***- GDL23_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00042178g0005.1 protein AED:0.36 eAED:0.37 QI:0|0.57|0.5|0.75|0.28|0.37|8|0|173; (*GB) gi|359479790|ref|XP_002271507.2| (e_value=5e-74) PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis vinifera];; (*SWP) sp|O94285|RPC8_SCHPO (e_value=3e-28) DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1;; (*TAIR) AT1G06790.2 (e_value=6e-66) | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087645-2089039 FORWARD LENGTH=189;; (*ITAG) Solyc07g006250.2.1 (e_value=1e-41) genomic_reference:SL2.40ch07 gene_region:1052734-1054730 transcript_region:SL2.40ch07:1052734..1054730+ functional_description:"DNA-directed RNA polymerase III subunit RPC8 (AHRD V1 ***- RPC8_HUMAN); contains Interpro domain(s) IPR013238 RNA polymerase III, subunit Rpc25 "; NbS00003971g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|4|0|355; (*GB) gi|255548748|ref|XP_002515430.1| (e_value=6e-31) transcription factor, putative [Ricinus communis];; (*TAIR) AT4G31805.1 (e_value=6e-15) | Symbols: | WRKY family transcription factor | chr4:15385454-15386775 FORWARD LENGTH=344;; (*ITAG) Solyc02g069540.1.1 (e_value=8e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33977851-33978654 transcript_region:SL2.40ch02:33977851..33978654+ go_terms:GO:0003700 functional_description:"Unknown Protein (AHRD V1)"; GO:0003700 NbS00003971g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.57|0.85|1|1|7|0|760; (*GB) gi|225444169|ref|XP_002268607.1| (e_value=0.0) PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=7e-105) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT3G25690.3 (e_value=3e-107) | Symbols: CHUP1 | Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=863;; (*ITAG) Solyc02g069560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33985494-33989608 transcript_region:SL2.40ch02:33985494..33989608- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- A2V813_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; NbS00003971g0021.1 protein AED:0.13 eAED:0.15 QI:26|0.55|0.4|0.9|0.33|0.6|10|32|357; (*GB) gi|255572069|ref|XP_002526975.1| (e_value=1e-120) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g069550.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33979113-33984984 transcript_region:SL2.40ch02:33979113..33984984- functional_description:"Prune homolog 2 (AHRD V1 *-*- D6RTK6_HUMAN)"; NbS00003971g0014.1 protein AED:0.34 eAED:0.58 QI:66|0|0|1|0|0|3|0|64 NbS00004740g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|163; (*GB) gi|359483522|ref|XP_002273741.2| (e_value=3e-65) PREDICTED: uncharacterized protein LOC100266966 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=1e-16) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G06330.1 (e_value=2e-44) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:1931671-1932266 REVERSE LENGTH=159;; (*ITAG) Solyc02g076880.2.1 (e_value=3e-78) genomic_reference:SL2.40ch02 gene_region:36572507-36575744 transcript_region:SL2.40ch02:36572507..36575744- go_terms:GO:0005507 functional_description:"Copper ion binding protein (AHRD V1 **-* B6T4F6_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00004740g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|224076966|ref|XP_002305071.1| (e_value=7e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09310.1 (e_value=9e-37) | Symbols: | Protein of unknown function, DUF538 | chr1:3009109-3009648 FORWARD LENGTH=179;; (*ITAG) Solyc02g076890.1.1 (e_value=5e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36583944-36584354 transcript_region:SL2.40ch02:36583944..36584354+ go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00004740g0019.1 protein AED:0.02 eAED:0.02 QI:765|1|1|1|1|1|2|40|240; (*GB) gi|255563124|ref|XP_002522566.1| (e_value=6e-72) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=1e-33) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=8e-35) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc02g076920.2.1 (e_value=7e-134) genomic_reference:SL2.40ch02 gene_region:36606127-36608560 transcript_region:SL2.40ch02:36606127..36608560+ go_terms:GO:0030528 functional_description:"Transcription factor MYC2 (AHRD V1 *--* RAP1_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0030528 NbS00004740g0022.1 protein AED:0.19 eAED:0.19 QI:0|1|0.90|1|0.3|0.27|11|290|453; (*GB) gi|359483524|ref|XP_002266564.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266871 [Vitis vinifera];; (*TAIR) AT1G29120.2 (e_value=5e-166) | Symbols: | Hydrolase-like protein family | chr1:10174481-10178143 FORWARD LENGTH=455;; (*ITAG) Solyc02g076870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36561133-36572505 transcript_region:SL2.40ch02:36561133..36572505+ functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00060815g0007.1 protein AED:0.41 eAED:0.41 QI:28|1|0.75|1|0.33|0.75|4|0|140; (*GB) gi|82621170|gb|ABB86273.1| (e_value=1e-97) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=1e-95) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=5e-93) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00060815g0002.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|397; (*GB) gi|225454014|ref|XP_002280967.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera];; (*SWP) sp|O81312|GAE3_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1;; (*TAIR) AT4G00110.1 (e_value=0.0) | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 | chr4:38702-39994 REVERSE LENGTH=430;; (*ITAG) Solyc10g018260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7214890-7216197 transcript_region:SL2.40ch10:7214890..7216197- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7M5S7_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00023717g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0.5|2|63|211; (*GB) gi|62867576|emb|CAI84653.1| (e_value=3e-95) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q8S8E3|PYL6_ARATH (e_value=4e-88) Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1;; (*TAIR) AT2G40330.1 (e_value=3e-89) | Symbols: PYL6, RCAR9 | PYR1-like 6 | chr2:16845177-16845824 REVERSE LENGTH=215;; (*ITAG) Solyc06g050500.2.1 (e_value=4e-110) genomic_reference:SL2.40ch06 gene_region:29665124-29666198 transcript_region:SL2.40ch06:29665124..29666198- go_terms:GO:0005515 functional_description:"Abscisic acid receptor PYL4 (AHRD V1 *--- PYL4_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0005515 NbS00000717g0003.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|1|1|2|0|105; (*ITAG) Solyc05g010550.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4759871-4760452 transcript_region:SL2.40ch05:4759871..4760452- functional_description:"Unknown Protein (AHRD V1)"; NbS00038662g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|120|333; (*GB) gi|46849529|dbj|BAD17855.1| (e_value=0.0) gibberellin 2-oxidase 1 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=5e-162) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G30040.1 (e_value=4e-134) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc07g056670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61794905-61796465 transcript_region:SL2.40ch07:61794905..61796465- go_terms:GO:0004062 functional_description:"Gibberellin 2-oxidase 2 (AHRD V1 ***- A0FK57_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0004062 NbS00011096g0004.1 protein AED:0.11 eAED:0.11 QI:191|0.88|0.9|1|0.55|0.7|10|200|418; (*GB) gi|296088501|emb|CBI37492.3| (e_value=1e-151) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G20925.1 (e_value=5e-125) | Symbols: | Auxin efflux carrier family protein | chr1:7289973-7292507 FORWARD LENGTH=472;; (*ITAG) Solyc02g037550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21802644-21806318 transcript_region:SL2.40ch02:21802644..21806318- go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00007677g0009.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|351; (*GB) gi|147833916|emb|CAN72697.1| (e_value=3e-172) hypothetical protein VITISV_011566 [Vitis vinifera];; (*SWP) sp|Q9SA98|ALKBH_ARATH (e_value=2e-156) Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2;; (*TAIR) AT1G11780.1 (e_value=1e-157) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:3977614-3979177 REVERSE LENGTH=345;; (*ITAG) Solyc04g045590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:33406281-33412110 transcript_region:SL2.40ch04:33406281..33412110+ go_terms:GO:0003906,GO:0008198,GO:0070579 functional_description:"Alpha-ketoglutarate-dependent dioxygenase AlkB (AHRD V1 *--* D5ALD4_RHOCB); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0003906,GO:0008198,GO:0070579 NbS00007677g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|225429797|ref|XP_002282811.1| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100261165 [Vitis vinifera];; (*TAIR) AT4G31360.1 (e_value=1e-31) | Symbols: | selenium binding | chr4:15221945-15223310 FORWARD LENGTH=186;; (*ITAG) Solyc08g080720.2.1 (e_value=3e-41) genomic_reference:SL2.40ch08 gene_region:61100501-61101420 transcript_region:SL2.40ch08:61100501..61101420- go_terms:GO:0045454 functional_description:"Selenoprotein H (AHRD V1 *-*- A8JGP7_CHLRE); contains Interpro domain(s) IPR011893 SelT/selW/selH selenoprotein "; GO:0045454 NbS00007677g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.88|1|0.5|0.66|9|213|206; (*GB) gi|225426866|ref|XP_002283515.1| (e_value=5e-109) PREDICTED: uncharacterized protein LOC100265107 isoform 1 [Vitis vinifera];; (*TAIR) AT1G63260.2 (e_value=8e-85) | Symbols: TET10 | tetraspanin10 | chr1:23466975-23468945 REVERSE LENGTH=258;; (*ITAG) Solyc08g080730.2.1 (e_value=8e-116) genomic_reference:SL2.40ch08 gene_region:61105596-61110540 transcript_region:SL2.40ch08:61105596..61110540- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00056982g0003.1 protein AED:0.13 eAED:0.13 QI:892|0.66|1|1|0.66|0.75|4|279|93; (*GB) gi|224133942|ref|XP_002327717.1| (e_value=4e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXB1|U548_ARATH (e_value=6e-42) UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1;; (*TAIR) AT2G17695.3 (e_value=4e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960). | chr2:7684214-7685009 REVERSE LENGTH=205;; (*ITAG) Solyc02g083180.2.1 (e_value=1e-56) genomic_reference:SL2.40ch02 gene_region:41254139-41255995 transcript_region:SL2.40ch02:41254139..41255995- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018960 Domain of unknown function DUF1990 "; NbS00010648g0006.1 protein AED:0.27 eAED:0.63 QI:70|0|0|1|1|1|2|107|26 NbS00009042g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|418; (*GB) gi|224122458|ref|XP_002330486.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=0.0) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=0.0) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc03g121830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63926516-63927811 transcript_region:SL2.40ch03:63926516..63927811+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00002121g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.7|0.81|0.81|0.6|0.81|11|620|542; (*GB) gi|28439620|gb|AAM18188.2| (e_value=0.0) deetiolated 1-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZNU6|DET1_SOLLC (e_value=0.0) Light-mediated development protein DET1 OS=Solanum lycopersicum GN=DET1 PE=1 SV=1;; (*TAIR) AT4G10180.1 (e_value=0.0) | Symbols: DET1, FUS2, ATDET1 | light-mediated development protein 1 / deetiolated1 (DET1) | chr4:6346543-6349146 FORWARD LENGTH=543;; (*ITAG) Solyc01g056340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:46495644-46516174 transcript_region:SL2.40ch01:46495644..46516174+ functional_description:"DET1-like protein (AHRD V1 ***- D0EW63_ORYSI); contains Interpro domain(s) IPR019138 De-etiolated protein 1, Det1 "; NbS00031687g0007.1 protein AED:0.32 eAED:0.32 QI:517|0.7|0.54|1|0.6|0.45|11|0|384; (*GB) gi|255569283|ref|XP_002525609.1| (e_value=0.0) Sodium-dependent phosphate transport protein, putative [Ricinus communis];; (*SWP) sp|O82390|ANTR1_ARATH (e_value=0.0) Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1;; (*TAIR) AT2G29650.1 (e_value=0.0) | Symbols: ANTR1, PHT4;1 | phosphate transporter 4;1 | chr2:12673685-12676003 REVERSE LENGTH=512;; (*ITAG) Solyc09g031750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23690774-23696189 transcript_region:SL2.40ch09:23690774..23696189+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00021494g0013.1 protein AED:0.17 eAED:0.18 QI:254|0.9|0.81|1|0.9|0.90|11|0|857; (*GB) gi|225448277|ref|XP_002274579.1| (e_value=0.0) PREDICTED: potassium transporter 7 [Vitis vinifera];; (*SWP) sp|Q9FY75|POT7_ARATH (e_value=0.0) Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2;; (*TAIR) AT5G09400.1 (e_value=0.0) | Symbols: KUP7 | K+ uptake permease 7 | chr5:2916377-2920604 FORWARD LENGTH=858;; (*ITAG) Solyc01g105150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85183433-85193710 transcript_region:SL2.40ch01:85183433..85193710+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0016020 NbS00021494g0003.1 protein AED:0.28 eAED:0.28 QI:594|1|1|1|0.75|0.55|9|1934|168; (*GB) gi|255581361|ref|XP_002531490.1| (e_value=1e-81) copper-transporting atpase paa1, putative [Ricinus communis];; (*SWP) sp|Q9SZC9|HMA6_ARATH (e_value=6e-77) Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1;; (*TAIR) AT4G33520.2 (e_value=5e-78) | Symbols: PAA1, HMA6 | P-type ATP-ase 1 | chr4:16118993-16125849 FORWARD LENGTH=949;; (*ITAG) Solyc01g105160.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:85193879-85204204 transcript_region:SL2.40ch01:85193879..85204204- go_terms:GO:0006508,GO:0016020,GO:0008152,GO:0016021 functional_description:"Copper-transporting P-type ATPase (AHRD V1 ***- Q12Y93_METBU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0006508,GO:0016020,GO:0008152,GO:0016021 NbS00014597g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|417; (*GB) gi|359475158|ref|XP_002281140.2| (e_value=2e-122) PREDICTED: RING-H2 finger protein ATL65-like [Vitis vinifera];; (*SWP) sp|Q67YI6|ATL65_ARATH (e_value=6e-67) RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2;; (*TAIR) AT3G18930.2 (e_value=4e-68) | Symbols: | RING/U-box superfamily protein | chr3:6524110-6525345 REVERSE LENGTH=411;; (*ITAG) Solyc01g109200.2.1 (e_value=3e-161) genomic_reference:SL2.40ch01 gene_region:87987513-87989088 transcript_region:SL2.40ch01:87987513..87989088- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014597g0008.1 protein AED:0.26 eAED:0.26 QI:223|0.94|0.94|1|0.94|0.88|18|779|641; (*GB) gi|225428594|ref|XP_002281151.1| (e_value=0.0) PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera];; (*SWP) sp|Q9XIA9|LACS2_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1;; (*TAIR) AT1G49430.1 (e_value=0.0) | Symbols: LACS2, LRD2 | long-chain acyl-CoA synthetase 2 | chr1:18291188-18295641 FORWARD LENGTH=665;; (*ITAG) Solyc01g109180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87977713-87983350 transcript_region:SL2.40ch01:87977713..87983350- go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 ***- B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00001395g0018.1 protein AED:0.00 eAED:0.00 QI:278|1|1|1|1|1|2|184|482; (*GB) gi|255549108|ref|XP_002515609.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LG53|UN932_ARATH (e_value=0.0) UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2;; (*TAIR) AT1G18010.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:6199980-6201359 FORWARD LENGTH=459;; (*ITAG) Solyc03g080020.2.1 (e_value=9e-58) genomic_reference:SL2.40ch03 gene_region:45462357-45464256 transcript_region:SL2.40ch03:45462357..45464256+ functional_description:"DUF895 domain membrane protein (AHRD V1 *-*- D4ALB1_ARTBC)"; NbS00001395g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|225455171|ref|XP_002268733.1| (e_value=6e-20) PREDICTED: uncharacterized protein LOC100253810 [Vitis vinifera];; (*TAIR) AT3G61980.1 (e_value=5e-21) | Symbols: | serine protease inhibitor, Kazal-type family protein | chr3:22956344-22956697 REVERSE LENGTH=117;; (*ITAG) Solyc03g080040.1.1 (e_value=7e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45470826-45471218 transcript_region:SL2.40ch03:45470826..45471218+ go_terms:GO:0004867 functional_description:"Serine-type endopeptidase inhibitor (AHRD V1 *-** B6TFT9_MAIZE)"; GO:0004867 NbS00001395g0019.1 protein AED:0.00 eAED:0.00 QI:77|1|1|1|1|1|2|168|117 NbS00001395g0006.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|662; (*GB) gi|255557152|ref|XP_002519607.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9FHG4|LRKS7_ARATH (e_value=5e-72) Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1;; (*TAIR) AT5G55830.1 (e_value=4e-73) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:22594655-22596700 FORWARD LENGTH=681;; (*ITAG) Solyc03g080060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45489542-45491467 transcript_region:SL2.40ch03:45489542..45491467- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM32_MARPO); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00001395g0020.1 protein AED:0.26 eAED:0.26 QI:381|1|1|1|1|1|9|546|421; (*GB) gi|225442194|ref|XP_002276800.1| (e_value=0.0) PREDICTED: stomatin-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9UJZ1|STML2_HUMAN (e_value=5e-103) Stomatin-like protein 2 OS=Homo sapiens GN=STOML2 PE=1 SV=1;; (*TAIR) AT4G27585.1 (e_value=1e-177) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr4:13766984-13769832 REVERSE LENGTH=411;; (*ITAG) Solyc03g080050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45473113-45480181 transcript_region:SL2.40ch03:45473113..45480181- go_terms:GO:0005102 functional_description:"Band 7 stomatin family protein (AHRD V1 **-- C1MUP6_MICPS); contains Interpro domain(s) IPR001972 Stomatin "; GO:0005102 NbS00002063g0009.1 protein AED:0.20 eAED:0.21 QI:13|1|0|1|1|0.5|2|0|886; (*GB) gi|225458603|ref|XP_002282770.1| (e_value=0.0) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|O48724|WEB1_ARATH (e_value=0.0) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=0.0) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc12g088830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62489990-62493033 transcript_region:SL2.40ch12:62489990..62493033- functional_description:"Myosin heavy chain-like (AHRD V1 **-- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00002063g0008.1 protein AED:0.71 eAED:0.71 QI:0|0.5|0.33|0.66|0|0|3|0|76 NbS00002063g0002.1 protein AED:0.26 eAED:0.26 QI:467|0.77|1|1|1|1|10|263|467; (*GB) gi|356552208|ref|XP_003544461.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max];; (*SWP) sp|Q9Y2H1|ST38L_HUMAN (e_value=2e-128) Serine/threonine-protein kinase 38-like OS=Homo sapiens GN=STK38L PE=1 SV=3;; (*TAIR) AT5G09890.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:3085810-3088842 REVERSE LENGTH=515;; (*ITAG) Solyc12g088820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62485341-62489176 transcript_region:SL2.40ch12:62485341..62489176+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00045169g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.2|1|1|1|5|208|229; (*GB) gi|375298532|dbj|BAL61093.1| (e_value=7e-51) putative basic leucine-zipper transcription factor, partial [Diospyros kaki];; (*SWP) sp|Q9C5Q2|AI5L3_ARATH (e_value=1e-25) ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1;; (*TAIR) AT2G41070.2 (e_value=1e-26) | Symbols: EEL, ATBZIP12, DPBF4 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17131249-17132208 FORWARD LENGTH=262;; (*ITAG) Solyc01g008980.2.1 (e_value=2e-63) genomic_reference:SL2.40ch01 gene_region:2995054-2999268 transcript_region:SL2.40ch01:2995054..2999268+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 **-- Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00028009g0003.1 protein AED:0.06 eAED:0.06 QI:675|1|1|1|1|1|2|142|292; (*GB) gi|5713172|gb|AAD47832.1| (e_value=9e-170) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-156) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=1e-75) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbC25175289g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|86 NbS00031651g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.93|0.94|17|40|589; (*GB) gi|225457911|ref|XP_002272227.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 35 isoform 1 [Vitis vinifera];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=0.0) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc12g089340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62908141-62919928 transcript_region:SL2.40ch12:62908141..62919928- functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; NbS00042679g0002.1 protein AED:0.01 eAED:0.01 QI:80|1|0.5|1|0|0.5|2|0|246; (*GB) gi|225426777|ref|XP_002282782.1| (e_value=7e-108) PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera];; (*SWP) sp|Q3UFY0|RRP36_MOUSE (e_value=6e-38) Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=2 SV=1;; (*TAIR) AT1G12650.4 (e_value=3e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=2e-133) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00042679g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|9211012|dbj|BAA99575.1| (e_value=1e-22) DC2.15 like protein [Daucus carota];; (*SWP) sp|P14009|14KD_DAUCA (e_value=1e-23) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=3e-23) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc08g078920.1.1 (e_value=1e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59749698-59750120 transcript_region:SL2.40ch08:59749698..59750120+ go_terms:GO:0008289 functional_description:"Proline-rich protein (AHRD V1 **-- Q41125_PHAVU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00042679g0001.1 protein AED:0.31 eAED:0.34 QI:299|0.83|0.85|1|0.66|0.57|7|284|188; (*GB) gi|224125114|ref|XP_002319503.1| (e_value=5e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q86KL4|MCTS1_DICDI (e_value=6e-37) Malignant T-cell-amplified sequence 1 homolog OS=Dictyostelium discoideum GN=mcts1 PE=3 SV=1;; (*TAIR) AT1G09150.1 (e_value=4e-65) | Symbols: | pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein | chr1:2946599-2948908 FORWARD LENGTH=181;; (*ITAG) Solyc01g099890.2.1 (e_value=3e-76) genomic_reference:SL2.40ch01 gene_region:81779437-81785423 transcript_region:SL2.40ch01:81779437..81785423+ go_terms:GO:0005515 functional_description:"Malignant T cell amplified sequence 1 (AHRD V1 **-- D0FH72_BRABE); contains Interpro domain(s) IPR016437 Translation machinery-associated RNA binding protein, predicted "; GO:0005515 NbS00008465g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|5|39|422; (*GB) gi|225450015|ref|XP_002272444.1| (e_value=9e-126) PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera];; (*SWP) sp|P52322|RPOD_MICAE (e_value=2e-56) RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1;; (*TAIR) AT5G13730.1 (e_value=4e-104) | Symbols: SIG4, SIGD | sigma factor 4 | chr5:4429132-4430744 REVERSE LENGTH=419;; (*ITAG) Solyc01g087690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74375979-74378427 transcript_region:SL2.40ch01:74375979..74378427- go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 ***- Q59965_SYNP2); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0006355 NbS00008465g0010.1 protein AED:0.39 eAED:0.39 QI:0|0.9|0.81|1|0.7|0.72|11|61|507; (*GB) gi|225450017|ref|XP_002274669.1| (e_value=1e-103) PREDICTED: uncharacterized protein LOC100267159 [Vitis vinifera];; (*TAIR) AT5G13720.1 (e_value=1e-90) | Symbols: | Uncharacterised protein family (UPF0114) | chr5:4427960-4429029 FORWARD LENGTH=262;; (*ITAG) Solyc01g087680.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:74370412-74374466 transcript_region:SL2.40ch01:74370412..74374466+ functional_description:"Uncharacterized membrane protein (AHRD V1 ***- A5GLU3_SYNPW); contains Interpro domain(s) IPR016804 Uncharacterised conserved protein UCP022348 "; NbS00059797g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.33|0.66|1|1|6|0|364; (*GB) gi|225446619|ref|XP_002280724.1| (e_value=2e-177) PREDICTED: uncharacterized protein LOC100255804 [Vitis vinifera];; (*TAIR) AT3G58640.2 (e_value=3e-138) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc07g055130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60575268-60584663 transcript_region:SL2.40ch07:60575268..60584663- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00025048g0007.1 protein AED:0.08 eAED:0.08 QI:202|0.83|0.85|1|0.83|0.71|7|141|242; (*GB) gi|225442593|ref|XP_002284423.1| (e_value=8e-49) PREDICTED: uncharacterized protein LOC100266912 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=3e-40) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc03g120730.2.1 (e_value=5e-61) genomic_reference:SL2.40ch03 gene_region:63072823-63076833 transcript_region:SL2.40ch03:63072823..63076833- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00025048g0008.1 protein AED:0.11 eAED:0.11 QI:32|1|0.71|1|1|1|7|0|474; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=0.0) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=0.0) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=0.0) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc06g066650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38269707-38272720 transcript_region:SL2.40ch06:38269707..38272720- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00025048g0006.1 protein AED:0.42 eAED:0.52 QI:0|0.5|0|1|1|1|3|0|145; (*GB) gi|407353|dbj|BAA04633.1| (e_value=4e-61) PSI-H precursor [Nicotiana sylvestris];; (*SWP) sp|P22179|PSAH_SPIOL (e_value=3e-51) Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1;; (*TAIR) AT1G52230.1 (e_value=7e-51) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=2e-61) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00024276g0003.1 protein AED:0.22 eAED:0.22 QI:246|0.9|0.90|1|0.9|0.90|11|451|494; (*GB) gi|849072|dbj|BAA09367.1| (e_value=0.0) A-type cyclin [Nicotiana tabacum];; (*SWP) sp|Q2QQ96|CCA21_ORYSJ (e_value=1e-151) Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1;; (*TAIR) AT5G11300.1 (e_value=2e-147) | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like cyclin 3B from Arabidopsis | chr5:3601811-3604466 REVERSE LENGTH=436;; (*ITAG) Solyc06g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37492237-37497897 transcript_region:SL2.40ch06:37492237..37497897+ go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 *-** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00005250g0005.1 protein AED:0.27 eAED:0.27 QI:200|0.8|0.81|1|0.3|0.36|11|404|394; (*GB) gi|224115416|ref|XP_002317029.1| (e_value=2e-125) predicted protein [Populus trichocarpa];; (*TAIR) AT1G20925.1 (e_value=6e-118) | Symbols: | Auxin efflux carrier family protein | chr1:7289973-7292507 FORWARD LENGTH=472;; (*ITAG) Solyc03g031990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8759273-8764184 transcript_region:SL2.40ch03:8759273..8764184- go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00005250g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.25|1|1|4|0|154; (*ITAG) Solyc02g082240.1.1 (e_value=2e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:40517470-40517907 transcript_region:SL2.40ch02:40517470..40517907+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022061g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0.2|0.6|0.75|0.6|5|0|213; (*GB) gi|211906450|gb|ACJ11718.1| (e_value=1e-78) phosphoglycerate kinase [Gossypium hirsutum];; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=6e-79) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=7e-76) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=3e-79) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00024087g0011.1 protein AED:0.05 eAED:0.05 QI:299|1|1|1|0.83|0.71|7|406|738; (*GB) gi|186462503|gb|ACC78614.1| (e_value=0.0) ethylene receptor [Nicotiana tabacum];; (*SWP) sp|O48929|ETR1_TOBAC (e_value=0.0) Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1;; (*TAIR) AT1G66340.1 (e_value=0.0) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00024087g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.66|1|0.75|0.77|9|1350|307; (*GB) gi|62867578|emb|CAI84654.1| (e_value=3e-120) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G14450.1 (e_value=1e-106) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc07g056590.2.1 (e_value=5e-160) genomic_reference:SL2.40ch07 gene_region:61723085-61730619 transcript_region:SL2.40ch07:61723085..61730619+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 *-** B0WMK0_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00001598g0007.1 protein AED:0.29 eAED:0.31 QI:285|0.66|0.76|1|0.58|0.76|13|509|542; (*GB) gi|62871468|gb|AAY18610.1| (e_value=0.0) glutamyl-tRNA synthetase [Nicotiana benthamiana];; (*SWP) sp|Q43794|SYE_TOBAC (e_value=0.0) Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G64050.1 (e_value=0.0) | Symbols: ATERS, OVA3, ERS | glutamate tRNA synthetase | chr5:25630196-25633099 REVERSE LENGTH=570;; (*ITAG) Solyc01g112290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90114267-90129540 transcript_region:SL2.40ch01:90114267..90129540+ go_terms:GO:0005515 functional_description:"Glutamyl-tRNA synthetase (AHRD V1 ***- Q52JJ5_NICBE); contains Interpro domain(s) IPR004527 Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial "; GO:0005515 NbS00016155g0008.1 protein AED:0.09 eAED:0.09 QI:61|0.4|0.33|1|0.2|0.5|6|0|610; (*GB) gi|255557825|ref|XP_002519942.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q9C6W5|AB14G_ARATH (e_value=0.0) ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1;; (*TAIR) AT1G31770.1 (e_value=0.0) | Symbols: ABCG14 | ATP-binding cassette 14 | chr1:11375252-11377644 REVERSE LENGTH=648;; (*ITAG) Solyc08g075430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56730208-56733305 transcript_region:SL2.40ch08:56730208..56733305- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00016155g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.6|1|0.55|0.7|10|489|531; (*GB) gi|225427599|ref|XP_002270781.1| (e_value=1e-152) PREDICTED: uncharacterized protein LOC100264895 [Vitis vinifera];; (*TAIR) AT4G19160.3 (e_value=6e-124) | Symbols: | unknown protein; Has 315 Blast hits to 315 proteins in 152 species: Archae - 0; Bacteria - 250; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:10477521-10479947 FORWARD LENGTH=441;; (*ITAG) Solyc08g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00030810g0011.1 protein AED:0.13 eAED:0.14 QI:250|1|0.84|1|0.75|0.76|13|0|927; (*GB) gi|255583860|ref|XP_002532681.1| (e_value=2e-98) Epsin-2, putative [Ricinus communis];; (*SWP) sp|Q67YI9|EPN2_ARATH (e_value=2e-91) Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1;; (*TAIR) AT2G43160.1 (e_value=1e-92) | Symbols: | ENTH/VHS family protein | chr2:17948884-17953267 FORWARD LENGTH=895;; (*ITAG) Solyc12g098740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64488255-64496191 transcript_region:SL2.40ch12:64488255..64496191+ functional_description:"Epsin-1 (AHRD V1 *-*- C0HAA4_SALSA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00030810g0007.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.5|1|1|2|0|77 NbS00030810g0013.1 protein AED:0.22 eAED:0.52 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-25) hypothetical protein [Nicotiana tabacum]; NbS00005789g0012.1 protein AED:0.28 eAED:0.31 QI:0|0.25|0.33|1|1|1|9|501|431; (*GB) gi|225425902|ref|XP_002271378.1| (e_value=2e-158) PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera];; (*SWP) sp|Q54EP7|SRP72_DICDI (e_value=6e-25) Signal recognition particle 72 kDa protein homolog OS=Dictyostelium discoideum GN=srp72 PE=3 SV=1;; (*TAIR) AT1G67680.1 (e_value=2e-130) | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664;; (*ITAG) Solyc11g062270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "; GO:0005047 NbS00005789g0018.1 protein AED:0.19 eAED:0.21 QI:0|0.25|0.2|1|0|0|5|12|654; (*GB) gi|28974687|gb|AAO61490.1| (e_value=0.0) arm repeat-containing protein [Nicotiana tabacum];; (*SWP) sp|O22193|PUB4_ARATH (e_value=0.0) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G23140.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826;; (*ITAG) Solyc12g100000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65255243-65258115 transcript_region:SL2.40ch12:65255243..65258115+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00005789g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|1|1|1|2|0|168; (*GB) gi|28974687|gb|AAO61490.1| (e_value=6e-72) arm repeat-containing protein [Nicotiana tabacum];; (*SWP) sp|Q5XEZ8|PUB2_ARATH (e_value=3e-28) U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1;; (*TAIR) AT5G67340.1 (e_value=2e-29) | Symbols: | ARM repeat superfamily protein | chr5:26864996-26867450 FORWARD LENGTH=707;; (*ITAG) Solyc12g100000.1.1 (e_value=3e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65255243-65258115 transcript_region:SL2.40ch12:65255243..65258115+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00005789g0015.1 protein AED:0.26 eAED:0.29 QI:21|0|0|1|0|0|4|0|208; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-33) hypothetical protein [Nicotiana tabacum]; NbS00020932g0004.1 protein AED:0.06 eAED:0.06 QI:190|0.85|0.87|1|1|1|8|204|925; (*GB) gi|337732515|gb|AEI71779.1| (e_value=0.0) JOKA2 [Nicotiana tabacum];; (*SWP) sp|Q5RC94|NBR1_PONAB (e_value=9e-17) Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1;; (*TAIR) AT4G24690.1 (e_value=2e-85) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704;; (*ITAG) Solyc06g071770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40590948-40595053 transcript_region:SL2.40ch06:40590948..40595053+ go_terms:GO:0008270 functional_description:"ZZ type zinc finger domain-containing protein (Fragment) (AHRD V1 *--- C1GFD2_PARBD); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0008270 NbS00015075g0006.1 protein AED:0.19 eAED:0.19 QI:188|1|0.77|1|0.75|0.77|9|167|431; (*GB) gi|255548624|ref|XP_002515368.1| (e_value=9e-49) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O23076|REM15_ARATH (e_value=4e-35) Putative B3 domain-containing protein REM15 OS=Arabidopsis thaliana GN=REM15.15 PE=2 SV=2;; (*TAIR) AT4G00260.1 (e_value=3e-36) | Symbols: MEE45 | Transcriptional factor B3 family protein | chr4:114971-117051 FORWARD LENGTH=528;; (*ITAG) Solyc08g006240.1.1 (e_value=7e-95) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00032565g0007.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0.5|0.66|3|0|660; (*GB) gi|356529414|ref|XP_003533287.1| (e_value=3e-105) PREDICTED: uncharacterized protein LOC100798960 [Glycine max];; (*TAIR) AT1G15030.1 (e_value=1e-14) | Symbols: | Protein of unknown function (DUF789) | chr1:5177895-5179853 FORWARD LENGTH=360;; (*ITAG) Solyc03g098630.2.1 (e_value=4e-170) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00032565g0006.1 protein AED:0.15 eAED:0.15 QI:89|1|1|1|0.88|0.9|10|395|290; (*GB) gi|225446283|ref|XP_002269268.1| (e_value=1e-144) PREDICTED: uncharacterized methyltransferase WBSCR22 [Vitis vinifera];; (*SWP) sp|Q9CY21|WBS22_MOUSE (e_value=1e-89) Uncharacterized methyltransferase WBSCR22 OS=Mus musculus GN=Wbscr22 PE=2 SV=1;; (*TAIR) AT5G57280.1 (e_value=4e-129) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23204533-23206485 FORWARD LENGTH=289;; (*ITAG) Solyc06g072250.2.1 (e_value=1e-161) genomic_reference:SL2.40ch06 gene_region:40902229-40906959 transcript_region:SL2.40ch06:40902229..40906959+ go_terms:GO:0016435 functional_description:"Methyltransferase WBSCR22 (AHRD V1 **-* B6TAS9_MAIZE); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016435 NbS00041428g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|442; (*GB) gi|357528933|gb|AET80687.1| (e_value=0.0) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=2e-47) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=2e-59) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g096790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63908247-63909593 transcript_region:SL2.40ch12:63908247..63909593- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 *--- Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00041428g0005.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|357528929|gb|AET80686.1| (e_value=5e-117) spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=1e-23) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT4G15390.1 (e_value=6e-23) | Symbols: | HXXXD-type acyl-transferase family protein | chr4:8792941-8794281 REVERSE LENGTH=446;; (*ITAG) Solyc12g096800.1.1 (e_value=4e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63910259-63911638 transcript_region:SL2.40ch12:63910259..63911638- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-- Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00016736g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|255539132|ref|XP_002510631.1| (e_value=2e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G20430.1 (e_value=4e-33) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7083471-7083821 REVERSE LENGTH=116;; (*ITAG) Solyc12g094480.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63040511-63043542 transcript_region:SL2.40ch12:63040511..63043542- functional_description:"Unknown Protein (AHRD V1)"; NbS00027144g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|0.75|0.8|5|0|265; (*GB) gi|225427089|ref|XP_002276604.1| (e_value=1e-106) PREDICTED: autophagy protein 5-like [Vitis vinifera];; (*SWP) sp|Q9FFI2|ATG5_ARATH (e_value=1e-89) Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1;; (*TAIR) AT5G17290.1 (e_value=1e-90) | Symbols: ATG5, APG5, ATATG5 | autophagy protein Apg5 family | chr5:5687160-5689821 REVERSE LENGTH=337;; (*ITAG) Solyc06g043140.2.1 (e_value=1e-144) genomic_reference:SL2.40ch06 gene_region:26072237-26073330 transcript_region:SL2.40ch06:26072237..26073330+ go_terms:GO:0005215 functional_description:"Autophagy protein 5 (AHRD V1 ***- Q3MQ01_MAIZE); contains Interpro domain(s) IPR007239 Autophagy-related protein 5 "; GO:0005215 NbS00032428g0007.1 protein AED:0.16 eAED:0.19 QI:0|0|0|1|0|0|2|0|276; (*GB) gi|225462060|ref|XP_002275924.1| (e_value=2e-35) PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=2e-20) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT3G13310.1 (e_value=1e-30) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4310827-4311300 REVERSE LENGTH=157;; (*ITAG) Solyc07g065960.1.1 (e_value=2e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64759664-64760149 transcript_region:SL2.40ch07:64759664..64760149- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 ***- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00011221g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|356543078|ref|XP_003539990.1| (e_value=1e-44) PREDICTED: uncharacterized protein LOC100805066 [Glycine max];; (*TAIR) AT1G06340.1 (e_value=6e-36) | Symbols: | Plant Tudor-like protein | chr1:1933583-1933987 REVERSE LENGTH=134;; (*ITAG) Solyc07g055040.1.1 (e_value=3e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60503990-60504391 transcript_region:SL2.40ch07:60503990..60504391+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00021284g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|551; (*GB) gi|255561466|ref|XP_002521743.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9FFE9|AAE6_ARATH (e_value=0.0) Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1;; (*TAIR) AT5G16340.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:5349255-5350907 REVERSE LENGTH=550;; (*ITAG) Solyc02g037490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21617137-21618795 transcript_region:SL2.40ch02:21617137..21618795- go_terms:GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00000825g0011.1 protein AED:0.01 eAED:0.01 QI:118|1|1|1|1|1|5|368|196; (*GB) gi|350538849|ref|NP_001234106.1| (e_value=2e-89) similar to u1 small nuclear ribonucleoprotein C [Solanum lycopersicum];; (*SWP) sp|F6HQ26|RU1C_VITVI (e_value=8e-46) U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1;; (*TAIR) AT4G03120.1 (e_value=4e-34) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:1385747-1387331 FORWARD LENGTH=207;; (*ITAG) Solyc06g008860.2.1 (e_value=5e-92) genomic_reference:SL2.40ch06 gene_region:2801290-2806168 transcript_region:SL2.40ch06:2801290..2806168- go_terms:GO:0005634,GO:0008270 functional_description:"U1 small nuclear ribonucleoprotein C protein (AHRD V1 *-*- C1MKH9_MICPS); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00000825g0015.1 protein AED:0.06 eAED:0.08 QI:11|0.66|0.75|1|0.66|0.5|4|642|688; (*GB) gi|255542480|ref|XP_002512303.1| (e_value=6e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P37707|B2_DAUCA (e_value=6e-12) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G32910.1 (e_value=5e-43) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:13959685-13961989 FORWARD LENGTH=691;; (*ITAG) Solyc06g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2798052-2800199 transcript_region:SL2.40ch06:2798052..2800199+ functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00000825g0009.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|130; (*GB) gi|57013996|ref|YP_173467.1| (e_value=4e-39) hypothetical protein NitaMp130 [Nicotiana tabacum]; NbS00033228g0005.1 protein AED:0.21 eAED:0.23 QI:237|0.77|0.9|1|0.66|0.7|10|272|276; (*GB) gi|113205378|gb|AAU93593.2| (e_value=3e-146) Ribulose-phosphate 3-epimerase, cytoplasmic isoform, putative [Solanum demissum];; (*SWP) sp|Q9SE42|RPE1_ORYSJ (e_value=2e-128) Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1;; (*TAIR) AT3G01850.2 (e_value=3e-125) | Symbols: | Aldolase-type TIM barrel family protein | chr3:300428-301987 REVERSE LENGTH=225;; (*ITAG) Solyc05g007260.2.1 (e_value=7e-138) genomic_reference:SL2.40ch05 gene_region:1925294-1928969 transcript_region:SL2.40ch05:1925294..1928969- go_terms:GO:0005515,GO:0004750 functional_description:"Ribulose-phosphate 3-epimerase (AHRD V1 **** C1E4B2_9CHLO); contains Interpro domain(s) IPR000056 Ribulose-phosphate 3-epimerase "; GO:0005515,GO:0004750 NbS00033228g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.87|0.88|0.88|0.75|0.77|9|270|393; (*GB) gi|113205376|gb|AAU93592.2| (e_value=0.0) uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum];; (*TAIR) AT2G46420.1 (e_value=0.0) | Symbols: | Plant protein 1589 of unknown function | chr2:19054891-19056830 FORWARD LENGTH=363;; (*ITAG) Solyc05g007270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1930337-1935562 transcript_region:SL2.40ch05:1930337..1935562- functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 ***- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00036008g0006.1 protein AED:0.22 eAED:0.27 QI:311|0.75|0.6|1|0.75|0.6|5|0|291; (*GB) gi|115765|sp|P10708.1|CB12_SOLLC (e_value=4e-172) RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor;; (*SWP) sp|P10708|CB12_SOLLC (e_value=1e-173) Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1;; (*TAIR) AT3G61470.1 (e_value=3e-140) | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257;; (*ITAG) Solyc10g006230.2.1 (e_value=8e-175) genomic_reference:SL2.40ch10 gene_region:920027-923670 transcript_region:SL2.40ch10:920027..923670+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 7, chloroplastic (AHRD V1 ***- CB12_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00036008g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|359473751|ref|XP_003631355.1| (e_value=5e-44) PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera];; (*TAIR) AT5G43260.1 (e_value=1e-42) | Symbols: | chaperone protein dnaJ-related | chr5:17357693-17357986 REVERSE LENGTH=97;; (*ITAG) Solyc05g015470.1.1 (e_value=3e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:10598462-10598755 transcript_region:SL2.40ch05:10598462..10598755- functional_description:"Drought-induced protein 1 (AHRD V1 ***- Q6XPS8_9FABA)"; NbS00029795g0001.1 protein AED:0.09 eAED:0.09 QI:206|0.9|0.81|1|0.9|0.81|11|2023|381; (*GB) gi|147834848|emb|CAN68309.1| (e_value=7e-90) hypothetical protein VITISV_043507 [Vitis vinifera];; (*SWP) sp|Q93YR3|F10AL_ARATH (e_value=7e-76) FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1;; (*TAIR) AT4G22670.1 (e_value=5e-77) | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting protein 1 | chr4:11918236-11920671 FORWARD LENGTH=441;; (*ITAG) Solyc08g079260.2.1 (e_value=2e-102) genomic_reference:SL2.40ch08 gene_region:60032686-60038031 transcript_region:SL2.40ch08:60032686..60038031+ go_terms:GO:0030544 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- Q4RFT2_TETNG); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0030544 NbS00029795g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|172; (*GB) gi|388502874|gb|AFK39503.1| (e_value=6e-24) unknown [Medicago truncatula];; (*TAIR) AT1G62790.1 (e_value=6e-17) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23252369-23253481 FORWARD LENGTH=150;; (*ITAG) Solyc08g079250.2.1 (e_value=1e-50) genomic_reference:SL2.40ch08 gene_region:60025771-60033618 transcript_region:SL2.40ch08:60025771..60033618+ go_terms:GO:0008289 functional_description:"Lipid transfer protein (AHRD V1 *-** O22110_PICAB); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00026968g0005.1 protein AED:0.00 eAED:0.00 QI:54|1|1|1|0|0|3|214|272; (*GB) gi|255559094|ref|XP_002520569.1| (e_value=4e-44) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|O65399|E131_ARATH (e_value=6e-22) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT5G67460.1 (e_value=3e-38) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:26921984-26923274 REVERSE LENGTH=380;; (*ITAG) Solyc05g016390.2.1 (e_value=7e-59) genomic_reference:SL2.40ch05 gene_region:16038482-16039802 transcript_region:SL2.40ch05:16038482..16039802- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00026968g0002.1 protein AED:0.25 eAED:0.25 QI:184|0|0.5|1|0|1|2|0|333; (*GB) gi|225432236|ref|XP_002270713.1| (e_value=1e-135) PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera];; (*SWP) sp|Q8RXW0|Y3761_ARATH (e_value=2e-120) Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1;; (*TAIR) AT3G17611.1 (e_value=2e-121) | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 | chr3:6024946-6026173 FORWARD LENGTH=334;; (*ITAG) Solyc07g042930.2.1 (e_value=1e-155) genomic_reference:SL2.40ch07 gene_region:53809257-53811891 transcript_region:SL2.40ch07:53809257..53811891+ go_terms:GO:0016021,GO:0005622 functional_description:"Rhomboid domain-containing protein 1 (AHRD V1 *-*- B5X3K7_SALSA); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021,GO:0005622 NbS00037802g0003.1 protein AED:0.16 eAED:0.16 QI:160|1|0.66|1|1|1|3|0|482; (*GB) gi|359480144|ref|XP_002269420.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FKC3|PP424_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2;; (*TAIR) AT5G48730.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19763152-19765136 FORWARD LENGTH=508;; (*ITAG) Solyc01g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1089833-1093094 transcript_region:SL2.40ch01:1089833..1093094- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028998g0003.1 protein AED:0.27 eAED:0.28 QI:0|0.33|0.25|0.75|1|1|4|0|267; (*GB) gi|359475228|ref|XP_003631618.1| (e_value=2e-119) PREDICTED: gibberellin 20 oxidase 1-like [Vitis vinifera];; (*SWP) sp|D4N502|DIOX3_PAPSO (e_value=2e-32) Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1;; (*TAIR) AT3G19000.2 (e_value=1e-95) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6554004-6554987 REVERSE LENGTH=278;; (*ITAG) Solyc01g108860.2.1 (e_value=9e-125) genomic_reference:SL2.40ch01 gene_region:87770045-87771692 transcript_region:SL2.40ch01:87770045..87771692- go_terms:GO:0016491,GO:0055114 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00038269g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.75|0.75|0.33|0.25|4|188|273; (*GB) gi|297742940|emb|CBI35807.3| (e_value=3e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SSA7|GLIP5_ARATH (e_value=6e-86) GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2;; (*TAIR) AT1G53920.1 (e_value=4e-87) | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137725-20139637 FORWARD LENGTH=385;; (*ITAG) Solyc12g049550.1.1 (e_value=1e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46635474-46642016 transcript_region:SL2.40ch12:46635474..46642016- go_terms:GO:0016298 functional_description:"GDSL esterase/lipase 5 (AHRD V1 **** GLIP5_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298 NbS00026205g0004.1 protein AED:0.13 eAED:0.14 QI:0|0.8|0.33|1|1|1|6|0|352; (*GB) gi|359478149|ref|XP_002264839.2| (e_value=3e-82) PREDICTED: probable serine/threonine-protein kinase GCN2-like [Vitis vinifera];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=1e-61) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.2 (e_value=8e-63) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1265;; (*ITAG) Solyc11g045000.1.1 (e_value=7e-167) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:36512440-36515151 transcript_region:SL2.40ch11:36512440..36515151- functional_description:"Kinase family protein (AHRD V1 ***- D7LWD0_ARALY); contains Interpro domain(s) IPR006575 RWD "; NbS00026205g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|86; (*GB) gi|255585505|ref|XP_002533444.1| (e_value=2e-37) eif2alpha kinase, putative [Ricinus communis];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=8e-33) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.1 (e_value=6e-34) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241;; (*ITAG) Solyc11g045010.1.1 (e_value=7e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:36520036-36520779 transcript_region:SL2.40ch11:36520036..36520779- functional_description:"Os04g0492500 protein (Fragment) (AHRD V1 ***- Q0JC46_ORYSJ); contains Interpro domain(s) IPR006575 RWD "; NbS00024540g0004.1 protein AED:0.11 eAED:0.11 QI:150|1|1|1|0.84|0.92|14|713|1233; (*GB) gi|306408056|dbj|BAJ16529.1| (e_value=0.0) TMV-associated RING finger protein [Nicotiana tabacum];; (*SWP) sp|O14099|YERG_SCHPO (e_value=4e-62) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT3G18290.1 (e_value=0.0) | Symbols: EMB2454, BTS | zinc finger protein-related | chr3:6274308-6280174 FORWARD LENGTH=1254;; (*ITAG) Solyc05g009150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3276065-3286837 transcript_region:SL2.40ch05:3276065..3286837+ go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00006267g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|224124036|ref|XP_002319229.1| (e_value=6e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRQ8|ATL51_ARATH (e_value=6e-55) RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2;; (*TAIR) AT3G03550.1 (e_value=4e-56) | Symbols: | RING/U-box superfamily protein | chr3:850391-851461 REVERSE LENGTH=356;; (*ITAG) Solyc01g081040.2.1 (e_value=5e-118) genomic_reference:SL2.40ch01 gene_region:72863145-72864248 transcript_region:SL2.40ch01:72863145..72864248+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00009195g0003.1 protein AED:0.41 eAED:0.41 QI:0|0.28|0.12|0.37|1|1|8|0|275; (*GB) gi|225432356|ref|XP_002275310.1| (e_value=2e-64) PREDICTED: anaphase-promoting complex subunit 7 [Vitis vinifera];; (*SWP) sp|Q8VY89|APC7_ARATH (e_value=4e-49) Anaphase-promoting complex subunit 7 OS=Arabidopsis thaliana GN=APC7 PE=2 SV=1;; (*TAIR) AT2G39090.2 (e_value=2e-50) | Symbols: APC7, AtAPC7 | tetratricopeptide repeat (TPR)-containing protein | chr2:16313087-16317233 REVERSE LENGTH=514;; (*ITAG) Solyc01g067490.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:68580146-68595715 transcript_region:SL2.40ch01:68580146..68595715- go_terms:GO:0005488 functional_description:"Anaphase-promoting complex subunit 7 (AHRD V1 **-- C0H9K6_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00044823g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|104; (*ITAG) Solyc11g020050.1.1 (e_value=9e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10019979-10020413 transcript_region:SL2.40ch11:10019979..10020413- functional_description:"Unknown Protein (AHRD V1)"; NbS00044823g0005.1 protein AED:0.05 eAED:0.05 QI:351|1|1|1|1|1|8|226|687; (*GB) gi|350537379|ref|NP_001233780.1| (e_value=0.0) heat shock protein 70 [Solanum lycopersicum];; (*SWP) sp|Q9LTX9|HSP7G_ARATH (e_value=0.0) Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana GN=HSP70-7 PE=1 SV=1;; (*TAIR) AT5G49910.1 (e_value=0.0) | Symbols: CPHSC70-2EAT SHOCK PROTEIN 70-2, HSC70-7, cpHsc70-2 | chloroplast heat shock protein 70-2 | chr5:20303470-20306295 FORWARD LENGTH=718;; (*ITAG) Solyc11g020040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:10015582-10019521 transcript_region:SL2.40ch11:10015582..10019521+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- Q1SKX2_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00032832g0009.1 protein AED:0.15 eAED:0.15 QI:441|1|1|1|1|1|3|184|407; (*GB) gi|297738090|emb|CBI27291.3| (e_value=2e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G61040.1 (e_value=2e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590;; (*ITAG) Solyc05g012230.2.1 (e_value=1e-110) genomic_reference:SL2.40ch05 gene_region:5506427-5508814 transcript_region:SL2.40ch05:5506427..5508814- functional_description:"Unknown Protein (AHRD V1)"; NbS00032832g0011.1 protein AED:0.34 eAED:0.39 QI:0|0|0.33|1|0|0.33|3|10|429; (*GB) gi|359482337|ref|XP_002267057.2| (e_value=4e-163) PREDICTED: pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8GW57|PP134_ARATH (e_value=2e-139) Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2;; (*TAIR) AT1G80150.1 (e_value=2e-140) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30148738-30149931 FORWARD LENGTH=397;; (*ITAG) Solyc05g012250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5539986-5545737 transcript_region:SL2.40ch05:5539986..5545737- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00032832g0003.1 protein AED:0.33 eAED:0.33 QI:0|1|0.85|1|0.83|0.71|7|209|418; (*GB) gi|225423464|ref|XP_002274070.1| (e_value=0.0) PREDICTED: magnesium transporter MRS2-5 [Vitis vinifera];; (*SWP) sp|Q9ZPR4|MRS25_ARATH (e_value=5e-172) Magnesium transporter MRS2-5 OS=Arabidopsis thaliana GN=MRS2-5 PE=1 SV=1;; (*TAIR) AT2G03620.2 (e_value=4e-173) | Symbols: MGT3, MRS2-5 | magnesium transporter 3 | chr2:1100489-1102168 REVERSE LENGTH=421;; (*ITAG) Solyc05g012220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5500851-5506199 transcript_region:SL2.40ch05:5500851..5506199+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-5 (AHRD V1 **** MRS25_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00008916g0004.1 protein AED:0.11 eAED:0.11 QI:185|0.83|1|1|1|1|7|428|354; (*GB) gi|1778145|gb|AAB40648.1| (e_value=3e-146) phosphate/phosphoenolpyruvate translocator precursor [Nicotiana tabacum];; (*SWP) sp|Q8RXN3|PPT1_ARATH (e_value=3e-126) Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1;; (*TAIR) AT5G33320.1 (e_value=3e-127) | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/phosphate translocator-related | chr5:12588950-12591408 FORWARD LENGTH=408;; (*ITAG) Solyc03g112870.2.1 (e_value=3e-130) genomic_reference:SL2.40ch03 gene_region:57216669-57220808 transcript_region:SL2.40ch03:57216669..57220808+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6P/phosphate translocator (AHRD V1 **** Q9MSB4_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00008916g0017.1 protein AED:0.15 eAED:0.15 QI:239|1|0.75|1|0.33|0.5|4|0|332; (*GB) gi|225457007|ref|XP_002282390.1| (e_value=6e-140) PREDICTED: uncharacterized protein LOC100262147 [Vitis vinifera];; (*TAIR) AT1G10650.1 (e_value=6e-92) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:3524122-3525318 REVERSE LENGTH=339;; (*ITAG) Solyc03g112860.2.1 (e_value=2e-167) genomic_reference:SL2.40ch03 gene_region:57210203-57215470 transcript_region:SL2.40ch03:57210203..57215470+ functional_description:"S-ribonuclease binding protein SBP1 (Fragment) (AHRD V1 **-- Q9M5Q3_PETHY)"; NbS00008916g0024.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0|1|0.33|0.5|4|0|352; (*GB) gi|356513613|ref|XP_003525506.1| (e_value=2e-70) PREDICTED: uncharacterized protein LOC100816653 [Glycine max];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=7e-64) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT4G18770.1 (e_value=6e-65) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427;; (*ITAG) Solyc03g112890.1.1 (e_value=2e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57226344-57228454 transcript_region:SL2.40ch03:57226344..57228454- go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00008916g0019.1 protein AED:0.09 eAED:0.09 QI:576|1|1|1|0.85|0.75|8|222|347; (*GB) gi|225457003|ref|XP_002282364.1| (e_value=5e-163) PREDICTED: uncharacterized protein LOC100245004 [Vitis vinifera];; (*TAIR) AT5G62960.1 (e_value=7e-138) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc03g112840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57198559-57200249 transcript_region:SL2.40ch03:57198559..57200249- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00008916g0005.1 protein AED:0.00 eAED:0.31 QI:337|-1|0|1|-1|1|1|217|423; (*GB) gi|225434961|ref|XP_002283909.1| (e_value=0.0) PREDICTED: fasciclin-like arabinogalactan protein 4 [Vitis vinifera];; (*SWP) sp|Q9SNC3|FLA4_ARATH (e_value=5e-123) Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1;; (*TAIR) AT3G46550.1 (e_value=4e-124) | Symbols: SOS5 | Fasciclin-like arabinogalactan family protein | chr3:17136612-17137874 REVERSE LENGTH=420;; (*ITAG) Solyc03g112880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57222149-57223432 transcript_region:SL2.40ch03:57222149..57223432- go_terms:GO:0005515,GO:0030247 functional_description:"Fasciclin-like arabinogalactan protein 9 (AHRD V1 ***- A9XTL4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005515,GO:0030247 NbS00008916g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|93; (*GB) gi|147797195|emb|CAN64667.1| (e_value=1e-36) hypothetical protein VITISV_024614 [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=1e-34) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=1e-35) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc06g071530.2.1 (e_value=4e-36) genomic_reference:SL2.40ch06 gene_region:40431000-40433125 transcript_region:SL2.40ch06:40431000..40433125+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00040356g0003.1 protein AED:0.10 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|907; (*GB) gi|359472776|ref|XP_002275546.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT3G57430.1 (e_value=0.0) | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890;; (*ITAG) Solyc02g081900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40244176-40246920 transcript_region:SL2.40ch02:40244176..40246920+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00040356g0013.1 protein AED:0.09 eAED:0.09 QI:252|0.77|0.8|0.9|0.77|0.7|10|388|1247; (*GB) gi|359476014|ref|XP_002280960.2| (e_value=0.0) PREDICTED: DNA topoisomerase 1-like [Vitis vinifera];; (*SWP) sp|Q1RIM1|TOP1_RICBR (e_value=0.0) DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1;; (*TAIR) AT4G31210.1 (e_value=0.0) | Symbols: | DNA topoisomerase, type IA, core | chr4:15165280-15172534 FORWARD LENGTH=1284;; (*ITAG) Solyc02g081910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40248991-40259228 transcript_region:SL2.40ch02:40248991..40259228- go_terms:GO:0003677 functional_description:"DNA topoisomerase (AHRD V1 **** B9SPT5_RICCO); contains Interpro domain(s) IPR005733 DNA topoisomerase I, bacterial-type "; GO:0003677 NbS00040356g0017.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|0|0.33|3|0|400; (*GB) gi|224053661|ref|XP_002297916.1| (e_value=1e-40) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g081930.2.1 (e_value=2e-55) genomic_reference:SL2.40ch02 gene_region:40272860-40273434 transcript_region:SL2.40ch02:40272860..40273434- functional_description:"Unknown Protein (AHRD V1)"; NbS00040356g0006.1 protein AED:0.24 eAED:0.24 QI:364|0.83|0.92|1|0.91|0.84|13|529|514; (*GB) gi|359473101|ref|XP_002275523.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264713 [Vitis vinifera];; (*TAIR) AT4G20130.1 (e_value=0.0) | Symbols: PTAC14 | plastid transcriptionally active 14 | chr4:10878914-10881697 FORWARD LENGTH=483;; (*ITAG) Solyc02g081920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40262124-40269883 transcript_region:SL2.40ch02:40262124..40269883- functional_description:"Plastid ribulose-1 5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-related protein (Fragment) (AHRD V1 *-*- A7KWL3_ARALP); contains Interpro domain(s) IPR001214 SET "; NbS00047388g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|0.5|0|3|222|244; (*GB) gi|225440398|ref|XP_002268453.1| (e_value=4e-60) PREDICTED: uncharacterized protein LOC100264843 [Vitis vinifera];; (*ITAG) Solyc10g086560.1.1 (e_value=3e-123) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:64674861-64677116 transcript_region:SL2.40ch10:64674861..64677116- functional_description:"Unknown Protein (AHRD V1)"; NbS00001815g0016.1 protein AED:0.18 eAED:0.32 QI:0|0|0.5|1|0|0|2|0|114; (*GB) gi|357435983|ref|XP_003588267.1| (e_value=4e-27) hypothetical protein MTR_1g005080 [Medicago truncatula];; (*ITAG) Solyc00g013190.1.1 (e_value=1e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10692250-10692603 transcript_region:SL2.40ch00:10692250..10692603- functional_description:"Unknown Protein (AHRD V1)"; NbS00001815g0007.1 protein AED:0.69 eAED:0.72 QI:0|0|0|1|1|1|2|0|87 NbS00001815g0013.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|0.66|0|0|3|0|71; (*TAIR) AT3G04970.1 (e_value=2e-13) | Symbols: | DHHC-type zinc finger family protein | chr3:1376240-1378339 FORWARD LENGTH=397;; (*ITAG) Solyc08g029200.2.1 (e_value=5e-16) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00001815g0015.1 protein AED:0.25 eAED:0.25 QI:411|1|0.88|1|0.75|0.88|9|0|391; (*GB) gi|225465923|ref|XP_002270290.1| (e_value=0.0) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-173) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT3G07940.1 (e_value=1e-174) | Symbols: | Calcium-dependent ARF-type GTPase activating protein family | chr3:2529542-2531368 FORWARD LENGTH=385;; (*ITAG) Solyc08g043140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29871906-29876489 transcript_region:SL2.40ch08:29871906..29876489- go_terms:GO:0032312,GO:0055114 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--- AGAP3_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312,GO:0055114 NbS00001815g0017.1 protein AED:0.26 eAED:0.38 QI:0|0|0|1|0|0|4|0|149 NbS00001815g0014.1 protein AED:0.32 eAED:0.66 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|147866727|emb|CAN82653.1| (e_value=1e-36) hypothetical protein VITISV_038833 [Vitis vinifera];; (*SWP) sp|Q3EBC2|ZDHC5_ARATH (e_value=1e-32) Probable S-acyltransferase At3g04970 OS=Arabidopsis thaliana GN=At3g04970 PE=2 SV=1;; (*TAIR) AT3G04970.2 (e_value=2e-34) | Symbols: | DHHC-type zinc finger family protein | chr3:1376240-1378010 FORWARD LENGTH=316;; (*ITAG) Solyc08g029200.2.1 (e_value=3e-49) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00008061g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|1|1|5|0|380; (*GB) gi|296084973|emb|CBI28388.3| (e_value=7e-127) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q681K7|GEX1_ARATH (e_value=2e-91) Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1;; (*TAIR) AT5G55490.1 (e_value=2e-92) | Symbols: ATGEX1, GEX1 | gamete expressed protein 1 | chr5:22478822-22481071 REVERSE LENGTH=593;; (*ITAG) Solyc11g006310.1.1 (e_value=4e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1027550-1030800 transcript_region:SL2.40ch11:1027550..1030800- functional_description:"GEX1 (Fragment) (AHRD V1 ***- Q49L63_ARATH)"; NbS00003202g0005.1 protein AED:0.15 eAED:0.18 QI:188|0.7|0.54|1|1|1|11|0|467; (*GB) gi|16518974|gb|AAL25088.1|AF426837_1 (e_value=0.0) Tobacco mosaic virus helicase domain-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9QYY8|SPAST_MOUSE (e_value=4e-58) Spastin OS=Mus musculus GN=Spast PE=2 SV=3;; (*TAIR) AT2G45500.1 (e_value=1e-108) | Symbols: | AAA-type ATPase family protein | chr2:18749973-18752636 REVERSE LENGTH=491;; (*ITAG) Solyc01g094150.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:77458346-77468495 transcript_region:SL2.40ch01:77458346..77468495+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 6A (AHRD V1 *--- PRS6A_RAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00003202g0006.1 protein AED:0.17 eAED:0.17 QI:162|1|1|1|1|1|2|269|213; (*GB) gi|225453816|ref|XP_002276737.1| (e_value=9e-62) PREDICTED: early nodulin-like protein 1-like [Vitis vinifera];; (*TAIR) AT1G08500.1 (e_value=2e-27) | Symbols: ENODL18, AtENODL18 | early nodulin-like protein 18 | chr1:2689110-2689881 FORWARD LENGTH=228;; (*ITAG) Solyc01g094040.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:77372507-77374920 transcript_region:SL2.40ch01:77372507..77374920- go_terms:GO:0009055 functional_description:"Plastocyanin-like domain containing protein expressed (AHRD V1 **-- Q2QRP3_ORYSJ); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00000536g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|182|240; (*GB) gi|356555608|ref|XP_003546122.1| (e_value=2e-124) PREDICTED: guanylate kinase-like [Glycine max];; (*SWP) sp|Q3ZWD8|KGUA_DEHSC (e_value=6e-58) Guanylate kinase OS=Dehalococcoides sp. (strain CBDB1) GN=gmk PE=3 SV=1;; (*TAIR) AT3G06200.1 (e_value=2e-111) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:1877678-1878526 FORWARD LENGTH=282;; (*ITAG) Solyc11g005900.1.1 (e_value=5e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:714120-715034 transcript_region:SL2.40ch11:714120..715034- go_terms:GO:0006163 functional_description:"Guanylate kinase family protein expressed (AHRD V1 ***- Q10M74_ORYSJ); contains Interpro domain(s) IPR017665 Guanylate kinase, sub-group "; GO:0006163 NbS00000536g0110.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.75|1|0.57|0.75|8|0|888 NbS00035496g0016.1 protein AED:0.22 eAED:0.34 QI:0|0|0|0.66|0|0.66|3|0|156; (*GB) gi|53831167|gb|AAU95266.1| (e_value=1e-47) R1 [Solanum tuberosum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-46) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*ITAG) Solyc05g007350.1.1 (e_value=5e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00035496g0014.1 protein AED:0.31 eAED:0.31 QI:0|0.14|0|1|0.42|0.37|8|0|1508; (*GB) gi|75248609|sp|Q8W1E0.1|R1A_SOLDE (e_value=0.0) RecName: Full=Late blight resistance protein R1-A; Short=Protein R1;; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=4e-46) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g007350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00035496g0015.1 protein AED:0.47 eAED:0.47 QI:0|0.25|0.2|1|0|0|5|0|250; (*GB) gi|75324231|sp|Q6L400.1|R1B16_SOLDE (e_value=2e-16) RecName: Full=Putative late blight resistance protein homolog R1B-16;; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=5e-18) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc05g007640.2.1 (e_value=1e-17) genomic_reference:SL2.40ch05 gene_region:2149733-2153957 transcript_region:SL2.40ch05:2149733..2153957+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00035496g0007.1 protein AED:0.49 eAED:0.55 QI:0|0|0|1|1|1|2|0|107 NbS00035496g0006.1 protein AED:0.59 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|80 NbS00035496g0011.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|0|0|2|0|78; (*GB) gi|190607599|gb|ACE79462.1| (e_value=4e-25) NBS-coding resistance gene analog [Nicotiana tabacum];; (*ITAG) Solyc05g012910.2.1 (e_value=3e-15) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00024364g0005.1 protein AED:0.07 eAED:0.08 QI:0|0.75|0.8|1|0.75|0.6|5|0|543; (*GB) gi|224109790|ref|XP_002315311.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=0.0) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G45290.1 (e_value=0.0) | Symbols: | Transketolase | chr2:18672737-18675589 FORWARD LENGTH=741;; (*ITAG) Solyc01g018020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:26846738-26852758 transcript_region:SL2.40ch01:26846738..26852758+ go_terms:GO:0004802,GO:0008152 functional_description:"Transketolase-like protein (AHRD V1 ***- Q8LE99_ARATH); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0008152 NbS00006338g0007.1 protein AED:0.06 eAED:0.07 QI:226|0.2|0.33|0.83|0|0.33|6|640|540; (*GB) gi|225448083|ref|XP_002276310.1| (e_value=0.0) PREDICTED: transmembrane protein 87B [Vitis vinifera];; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=5e-26) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT2G01070.1 (e_value=5e-153) | Symbols: | Lung seven transmembrane receptor family protein | chr2:75596-77625 FORWARD LENGTH=496;; (*ITAG) Solyc10g045600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30297711-30304480 transcript_region:SL2.40ch10:30297711..30304480+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00006338g0108.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0.5|2|0|84 NbS00006338g0103.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|233 NbS00006338g0316.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|63 NbS00006338g0305.1 protein AED:0.28 eAED:0.38 QI:0|0|0|1|1|1|2|0|234 NbS00006338g0323.1 protein AED:0.09 eAED:0.09 QI:16|1|1|1|1|1|5|328|389 NbS00006338g0321.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|1|4|0|425 NbS00006338g0303.1 protein AED:0.19 eAED:0.19 QI:2544|1|0.85|1|0.16|0|7|0|130 NbS00006338g0302.1 protein AED:0.43 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|235 NbS00006850g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|1|1|3|0|826; (*GB) gi|225448540|ref|XP_002273561.1| (e_value=0.0) PREDICTED: ectonucleoside triphosphate diphosphohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9MYU4|ENTP1_PIG (e_value=1e-34) Ectonucleoside triphosphate diphosphohydrolase 1 OS=Sus scrofa GN=ENTPD1 PE=1 SV=1;; (*TAIR) AT4G19180.1 (e_value=0.0) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr4:10485518-10487868 REVERSE LENGTH=740;; (*ITAG) Solyc05g052490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61845448-61849046 transcript_region:SL2.40ch05:61845448..61849046- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 *--- Q6DC46_DANRE); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00006850g0016.1 protein AED:0.15 eAED:0.15 QI:145|0.9|0.90|1|0.8|0.90|11|433|499; (*GB) gi|297736559|emb|CBI25430.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54ND5|MINP1_DICDI (e_value=1e-33) Multiple inositol polyphosphate phosphatase 1 OS=Dictyostelium discoideum GN=mipp1 PE=1 SV=1;; (*TAIR) AT1G09870.1 (e_value=0.0) | Symbols: | histidine acid phosphatase family protein | chr1:3205817-3208444 FORWARD LENGTH=487;; (*ITAG) Solyc05g052480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61836481-61844845 transcript_region:SL2.40ch05:61836481..61844845+ go_terms:GO:0003993 functional_description:"Multiple inositol polyphosphate phosphatase (AHRD V1 ***- Q54ND5_DICDI); contains Interpro domain(s) IPR016274 Histidine acid phosphatase, eukaryotic "; GO:0003993 NbS00006850g0014.1 protein AED:0.26 eAED:0.26 QI:22|1|1|1|1|1|7|344|147; (*GB) gi|29839345|sp|Q8H1T3.1|FRI2_TOBAC (e_value=2e-96) RecName: Full=Ferritin-2, chloroplastic; AltName: Full=NtFer2; Flags: Precursor;; (*SWP) sp|Q8H1T3|FRI2_TOBAC (e_value=5e-98) Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1;; (*TAIR) AT2G40300.1 (e_value=1e-84) | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831501-16833214 REVERSE LENGTH=259;; (*ITAG) Solyc05g052470.2.1 (e_value=2e-95) genomic_reference:SL2.40ch05 gene_region:61831795-61835156 transcript_region:SL2.40ch05:61831795..61835156+ go_terms:GO:0008198,GO:0042802 functional_description:"Ferritin (AHRD V1 ***- A7UGG8_SOLTU); contains Interpro domain(s) IPR001519 Ferritin, N-terminal "; GO:0008198,GO:0042802 NbS00037242g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|2346982|dbj|BAA21925.1| (e_value=3e-57) ZPT2-8 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=1e-28) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G37430.1 (e_value=9e-30) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr2:15706454-15706990 FORWARD LENGTH=178;; (*ITAG) Solyc05g054650.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00019020g0005.1 protein AED:0.10 eAED:0.10 QI:232|0.66|1|1|0|0|4|194|109 NbS00011115g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|0.66|3|0|752; (*GB) gi|498278|gb|AAA33715.1| (e_value=0.0) receptor kinase [Petunia integrifolia subsp. inflata];; (*SWP) sp|C0LGR9|Y4312_ARATH (e_value=2e-111) Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1;; (*TAIR) AT4G31250.1 (e_value=2e-112) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:15179201-15181751 REVERSE LENGTH=676;; (*ITAG) Solyc03g124050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64817768-64820373 transcript_region:SL2.40ch03:64817768..64820373- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00030331g0004.1 protein AED:0.18 eAED:0.25 QI:10|0|0|1|0|0|5|0|365; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-61) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc03g044360.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00000260g0018.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|260; (*GB) gi|350539037|ref|NP_001234115.1| (e_value=2e-173) 60S ribosomal protein L8 [Solanum lycopersicum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=5e-175) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=1e-168) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc07g063890.2.1 (e_value=3e-177) genomic_reference:SL2.40ch07 gene_region:63463886-63465926 transcript_region:SL2.40ch07:63463886..63465926+ go_terms:GO:0032183,GO:0003735 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0032183,GO:0003735 NbS00000260g0022.1 protein AED:0.30 eAED:0.30 QI:34|1|1|1|1|1|2|512|117; (*ITAG) Solyc07g063910.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:63472884-63473581 transcript_region:SL2.40ch07:63472884..63473581+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000260g0017.1 protein AED:0.31 eAED:0.31 QI:448|1|0.6|1|0.75|0.8|5|0|277; (*GB) gi|225461193|ref|XP_002283181.1| (e_value=2e-44) PREDICTED: uncharacterized protein LOC100265933 [Vitis vinifera];; (*TAIR) AT5G54540.1 (e_value=1e-26) | Symbols: | Uncharacterised conserved protein (UCP012943) | chr5:22156604-22157857 FORWARD LENGTH=297;; (*ITAG) Solyc07g063870.2.1 (e_value=5e-79) genomic_reference:SL2.40ch07 gene_region:63452650-63456122 transcript_region:SL2.40ch07:63452650..63456122+ functional_description:"AT5g54540/MRB17_4 (AHRD V1 *-*- Q9FIV0_ARATH)"; NbS00000260g0019.1 protein AED:0.20 eAED:0.23 QI:0|0.75|0.77|1|0.87|0.77|9|569|166; (*GB) gi|9758949|dbj|BAB09336.1| (e_value=8e-70) beta-glucosidase [Arabidopsis thaliana];; (*SWP) sp|Q9FIU7|BGL41_ARATH (e_value=4e-71) Putative beta-glucosidase 41 OS=Arabidopsis thaliana GN=BGLU41 PE=3 SV=2;; (*TAIR) AT5G54570.1 (e_value=3e-72) | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235 REVERSE LENGTH=535;; (*ITAG) Solyc07g063880.2.1 (e_value=8e-83) genomic_reference:SL2.40ch07 gene_region:63455926-63459903 transcript_region:SL2.40ch07:63455926..63459903- go_terms:GO:0017134 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0017134 NbS00024811g0009.1 protein AED:0.05 eAED:0.05 QI:51|1|0.5|1|0|0|2|0|79 NbS00024811g0011.1 protein AED:0.17 eAED:0.21 QI:0|0.5|0.4|1|1|1|5|0|448; (*GB) gi|479090|emb|CAA55655.1| (e_value=0.0) sulfate adenylyltransferase [Solanum tuberosum];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=0.0) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=0.0) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00004589g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.42|1|0.5|0.71|7|0|356; (*GB) gi|147867007|emb|CAN80518.1| (e_value=3e-57) hypothetical protein VITISV_009170 [Vitis vinifera];; (*TAIR) AT4G15050.1 (e_value=7e-53) | Symbols: | Protein of Unknown Function (DUF239) | chr4:8588548-8590345 REVERSE LENGTH=396;; (*ITAG) Solyc08g074870.1.1 (e_value=2e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56182191-56186322 transcript_region:SL2.40ch08:56182191..56186322- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SXW9_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbC25737543g0001.1 protein AED:0.07 eAED:0.09 QI:24|1|0.6|1|1|1|5|0|279; (*GB) gi|10798652|emb|CAC12826.1| (e_value=0.0) malate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|O24047|MDHC_MESCR (e_value=0.0) Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1;; (*TAIR) AT1G04410.1 (e_value=0.0) | Symbols: | Lactate/malate dehydrogenase family protein | chr1:1189418-1191267 REVERSE LENGTH=332;; (*ITAG) Solyc09g090140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65031288-65034684 transcript_region:SL2.40ch09:65031288..65034684- go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q2PYY8_SOLTU); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00052359g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|335; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=3e-145) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=8e-147) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=7e-114) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00003423g0018.1 protein AED:0.03 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|497; (*GB) gi|147818144|emb|CAN60407.1| (e_value=8e-65) hypothetical protein VITISV_008798 [Vitis vinifera];; (*TAIR) AT4G11780.1 (e_value=3e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23020.2); Has 550 Blast hits to 387 proteins in 92 species: Archae - 0; Bacteria - 32; Metazoa - 132; Fungi - 122; Plants - 80; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink). | chr4:7085970-7088212 FORWARD LENGTH=473;; (*ITAG) Solyc08g080280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60753181-60757852 transcript_region:SL2.40ch08:60753181..60757852- functional_description:"Unknown Protein (AHRD V1)"; NbS00003423g0019.1 protein AED:0.06 eAED:0.06 QI:107|1|1|1|0.5|0.33|9|118|351; (*GB) gi|356568332|ref|XP_003552365.1| (e_value=0.0) PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like isoform 1 [Glycine max];; (*SWP) sp|Q9LDX3|UTR4_ARATH (e_value=0.0) UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1;; (*TAIR) AT1G12600.1 (e_value=0.0) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr1:4286414-4288859 REVERSE LENGTH=349;; (*ITAG) Solyc08g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60744080-60747659 transcript_region:SL2.40ch08:60744080..60747659- go_terms:GO:0046964 functional_description:"3&apos-phosphoadenosine 5&apos-phosphosulfate transporter 1 (AHRD V1 **** B2BMP5_CANFA); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0046964 NbS00003423g0020.1 protein AED:0.32 eAED:0.32 QI:138|1|0.88|1|1|1|9|505|364; (*GB) gi|225426763|ref|XP_002282656.1| (e_value=6e-148) PREDICTED: uncharacterized protein LOC100261574 [Vitis vinifera];; (*TAIR) AT4G11790.1 (e_value=6e-71) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr4:7090456-7093208 FORWARD LENGTH=443;; (*ITAG) Solyc08g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60736712-60743705 transcript_region:SL2.40ch08:60736712..60743705- go_terms:GO:0046907 functional_description:"RanBP1 domain containing protein (AHRD V1 ***- Q60DL9_ORYSJ); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0046907 NbS00003423g0007.1 protein AED:0.45 eAED:0.73 QI:61|0|0.5|1|0|0.5|2|0|424; (*GB) gi|297746072|emb|CBI16128.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T0D6|PP306_ARATH (e_value=1e-165) Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1;; (*TAIR) AT4G11690.1 (e_value=1e-166) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=566;; (*ITAG) Solyc01g100450.1.1 (e_value=8e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82236040-82237857 transcript_region:SL2.40ch01:82236040..82237857+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJU9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003423g0022.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|0|105; (*GB) gi|225432426|ref|XP_002278120.1| (e_value=1e-58) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B isoform 2 [Vitis vinifera];; (*SWP) sp|Q8LGE7|NDA8B_ARATH (e_value=1e-56) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=2 SV=1;; (*TAIR) AT5G18800.2 (e_value=8e-58) | Symbols: | Cox19-like CHCH family protein | chr5:6267304-6268393 FORWARD LENGTH=106;; (*ITAG) Solyc08g080240.2.1 (e_value=3e-73) genomic_reference:SL2.40ch08 gene_region:60728099-60731334 transcript_region:SL2.40ch08:60728099..60731334+ go_terms:GO:0008137 functional_description:"NADH ubiquinone dehydrogenase (AHRD V1 **** B0X766_CULQU); contains Interpro domain(s) IPR010625 CHCH "; GO:0008137 NbS00003423g0021.1 protein AED:0.21 eAED:0.21 QI:263|1|1|1|0.5|0.8|5|493|449; (*GB) gi|225453234|ref|XP_002264685.1| (e_value=0.0) PREDICTED: APO protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XIR4|APO1_ARATH (e_value=0.0) APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1;; (*TAIR) AT1G64810.1 (e_value=0.0) | Symbols: APO1 | Arabidopsis thaliana protein of unknown function (DUF794) | chr1:24086882-24088276 FORWARD LENGTH=436;; (*ITAG) Solyc08g080250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60733665-60736400 transcript_region:SL2.40ch08:60733665..60736400+ functional_description:"APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00008124g0003.1 protein AED:0.17 eAED:0.17 QI:44|0|0.33|1|0.5|0.66|3|0|212; (*GB) gi|532754|gb|AAA21135.1| (e_value=2e-120) RNase NE [Nicotiana alata];; (*SWP) sp|P80022|RNLE_SOLLC (e_value=7e-99) Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2;; (*TAIR) AT2G02990.1 (e_value=1e-72) | Symbols: RNS1, ATRNS1 | ribonuclease 1 | chr2:873714-874667 FORWARD LENGTH=230;; (*ITAG) Solyc05g007950.2.1 (e_value=5e-100) genomic_reference:SL2.40ch05 gene_region:2373133-2374737 transcript_region:SL2.40ch05:2373133..2374737- go_terms:GO:0004521 functional_description:"Ribonuclease T2 (AHRD V1 ***- Q6A3R1_SOLLC); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00026917g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.42|1|1|1|7|0|602; (*GB) gi|224056431|ref|XP_002298853.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=3e-142) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=2e-143) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc07g065260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64315902-64321013 transcript_region:SL2.40ch07:64315902..64321013+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 ***- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00026917g0012.1 protein AED:0.11 eAED:0.11 QI:66|1|0.83|1|1|1|6|272|582; (*GB) gi|224129150|ref|XP_002320513.1| (e_value=1e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJ41|C3H18_ARATH (e_value=1e-116) Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1;; (*TAIR) AT2G05160.1 (e_value=1e-117) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr2:1859011-1860931 REVERSE LENGTH=536;; (*ITAG) Solyc07g065290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64330684-64333914 transcript_region:SL2.40ch07:64330684..64333914- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 18 (AHRD V1 ***- C3H18_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00026917g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0|2|268|547; (*GB) gi|225447596|ref|XP_002272334.1| (e_value=0.0) PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=0.0) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=0.0) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g065270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64321335-64322951 transcript_region:SL2.40ch07:64321335..64322951- go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00032120g0006.1 protein AED:0.31 eAED:0.32 QI:0|0|0.25|1|0|0.25|4|439|233; (*GB) gi|225453690|ref|XP_002270273.1| (e_value=4e-22) PREDICTED: transcription factor 25 [Vitis vinifera];; (*TAIR) AT2G46900.1 (e_value=5e-19) | Symbols: | CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269678-19271987 FORWARD LENGTH=627;; (*ITAG) Solyc08g016090.2.1 (e_value=2e-109) genomic_reference:SL2.40ch08 gene_region:6646727-6657472 transcript_region:SL2.40ch08:6646727..6657472+ functional_description:"Nulp1-pending protein (AHRD V1 *--- A1CQX6_ASPCL); contains Interpro domain(s) IPR006994 Basic helix-loop-helix, Nulp1-type "; NbS00018507g0012.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|32|446; (*GB) gi|55956986|emb|CAI11457.1| (e_value=0.0) putative glycosyltransferase [Solanum tuberosum];; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=0.0) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=0.0) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc03g115740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00018507g0023.1 protein AED:0.27 eAED:0.27 QI:187|1|1|1|1|1|6|256|505; (*GB) gi|225457353|ref|XP_002281793.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera];; (*TAIR) AT5G61390.1 (e_value=1e-172) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:24678802-24680857 REVERSE LENGTH=487;; (*ITAG) Solyc12g036220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:29868498-29873746 transcript_region:SL2.40ch12:29868498..29873746+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00018507g0022.1 protein AED:0.42 eAED:0.42 QI:0|1|0.5|1|0.66|0.75|4|0|172; (*GB) gi|217075350|gb|ACJ86035.1| (e_value=2e-69) unknown [Medicago truncatula];; (*SWP) sp|A6QPY8|PIN4_BOVIN (e_value=5e-24) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1;; (*TAIR) AT1G26550.1 (e_value=3e-70) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9171800-9172716 FORWARD LENGTH=142;; (*ITAG) Solyc12g036200.1.1 (e_value=1e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:29804400-29807477 transcript_region:SL2.40ch12:29804400..29807477+ go_terms:GO:0016853 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q2F670_BOMMO); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0016853 NbS00018507g0024.1 protein AED:0.06 eAED:0.06 QI:14|0.75|1|1|0.75|0.8|5|46|122; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=7e-34) MADS-box protein 15 [Petunia x hybrida];; (*TAIR) AT1G77080.5 (e_value=1e-12) | Symbols: | K-box region and MADS-box transcription factor family protein | chr1:28955679-28959610 FORWARD LENGTH=173;; (*ITAG) Solyc05g015720.1.1 (e_value=2e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:11820296-11823497 transcript_region:SL2.40ch05:11820296..11823497- go_terms:GO:0003700 functional_description:"MADS box transcription factor-like protein (AHRD V1 **** Q9FJQ7_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700 NbS00018507g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|75; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=1e-32) MADS-box protein 15 [Petunia x hybrida];; (*SWP) sp|Q38847|AGL15_ARATH (e_value=2e-26) Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1;; (*TAIR) AT5G13790.1 (e_value=1e-27) | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449128-4450802 REVERSE LENGTH=268;; (*ITAG) Solyc05g015730.1.1 (e_value=7e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:11842331-11842573 transcript_region:SL2.40ch05:11842331..11842573- go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D3U2G9_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00018507g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|491; (*GB) gi|297733954|emb|CBI15201.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XI77|FUT9_ARATH (e_value=3e-117) Probable fucosyltransferase 9 OS=Arabidopsis thaliana GN=FUT9 PE=2 SV=2;; (*TAIR) AT1G14110.1 (e_value=2e-118) | Symbols: FUT9, ATFUT9 | fucosyltransferase 9 | chr1:4830297-4831915 FORWARD LENGTH=474;; (*ITAG) Solyc07g047920.1.1 (e_value=1e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56451952-56454673 transcript_region:SL2.40ch07:56451952..56454673- go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00018507g0021.1 protein AED:0.37 eAED:0.38 QI:70|1|0.75|1|1|1|4|0|167; (*GB) gi|78191454|gb|ABB29948.1| (e_value=2e-95) vesicle transport v-SNARE 11-like [Solanum tuberosum];; (*SWP) sp|Q9LVP9|VTI13_ARATH (e_value=2e-80) Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1;; (*TAIR) AT3G29100.1 (e_value=4e-82) | Symbols: VTI13, ATVTI13 | vesicle transport V-snare 13 | chr3:11075916-11076581 REVERSE LENGTH=195;; (*ITAG) Solyc03g115760.2.1 (e_value=3e-97) genomic_reference:SL2.40ch03 gene_region:59426055-59429910 transcript_region:SL2.40ch03:59426055..59429910+ go_terms:GO:0004872 functional_description:"Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0004872 NbS00041953g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.33|1|1|3|0|199; (*GB) gi|371539268|gb|AEL17349.2| (e_value=8e-37) TCP2 [Petunia x hybrida];; (*SWP) sp|Q9SBV6|CYCLD_ANTML (e_value=5e-30) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1;; (*TAIR) AT1G67260.2 (e_value=6e-24) | Symbols: TCP1 | TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351;; (*ITAG) Solyc03g045030.1.1 (e_value=7e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:15326821-15327672 transcript_region:SL2.40ch03:15326821..15327672- functional_description:"CYCLOIDEA-like protein (Fragment) (AHRD V1 ***- Q84RA7_9LAMI); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00017441g0008.1 protein AED:0.17 eAED:0.18 QI:0|0.42|0.12|1|0.71|0.62|8|0|928; (*GB) gi|255549024|ref|XP_002515568.1| (e_value=0.0) heat shock protein binding protein, putative [Ricinus communis];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=3e-107) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=0.0) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00017441g0002.1 protein AED:0.43 eAED:0.46 QI:0|0|0.25|1|1|1|4|0|211; (*GB) gi|356513910|ref|XP_003525651.1| (e_value=4e-83) PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max];; (*TAIR) AT2G26890.1 (e_value=7e-73) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00043433g0014.1 protein AED:0.04 eAED:0.08 QI:0|0.66|0.57|0.85|0|0.28|7|0|301; (*GB) gi|39598908|gb|AAR28998.1| (e_value=0.0) CMV 1a interacting protein 1 [Nicotiana tabacum];; (*ITAG) Solyc10g008020.2.1 (e_value=1e-168) genomic_reference:SL2.40ch10 gene_region:2183877-2189041 transcript_region:SL2.40ch10:2183877..2189041+ go_terms:GO:0008152 functional_description:"Methyltransferase (AHRD V1 *-*- B8H501_CAUCN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00043433g0011.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|1|1|4|0|245; (*GB) gi|15778154|dbj|BAB68527.1| (e_value=9e-135) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93213|14338_SOLLC (e_value=1e-133) 14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2;; (*TAIR) AT1G34760.2 (e_value=3e-125) | Symbols: GRF11, GF14 OMICRON, RHS5 | general regulatory factor 11 | chr1:12743981-12745603 REVERSE LENGTH=252;; (*ITAG) Solyc12g010860.1.1 (e_value=9e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3781557-3784182 transcript_region:SL2.40ch12:3781557..3784182- go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha (AHRD V1 **-- 1433B_XENTR); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00043433g0008.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|76 NbS00043433g0005.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|130; (*GB) gi|57013916|ref|YP_173389.1| (e_value=8e-16) NADH dehydrogenase subunit 4L [Nicotiana tabacum];; (*ITAG) ATMG00650.1 (e_value=2e-16) | Symbols: NAD4L | NADH dehydrogenase subunit 4L | chrM:188929-189231 REVERSE LENGTH=100; NbS00043433g0010.1 protein AED:0.68 eAED:0.89 QI:86|0|0.5|1|0|0.5|2|37|84 NbC25905601g0003.1 protein AED:0.05 eAED:0.05 QI:3|1|1|1|1|1|3|294|151; (*GB) gi|288559134|sp|A1XGB4.1|PIMP1_CAPAN (e_value=2e-68) RecName: Full=CASP-like protein PIMP1; AltName: Full=Pathogen-induced membrane protein 1; Short=CaPIMP1;; (*SWP) sp|A1XGB4|PIMP1_CAPAN (e_value=6e-70) CASP-like protein PIMP1 OS=Capsicum annuum GN=PIMP1 PE=2 SV=1;; (*TAIR) AT2G39530.1 (e_value=3e-27) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16498659-16499401 REVERSE LENGTH=178;; (*ITAG) Solyc04g011490.2.1 (e_value=7e-62) genomic_reference:SL2.40ch04 gene_region:3923552-3925091 transcript_region:SL2.40ch04:3923552..3925091+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO)"; NbS00016447g0006.1 protein AED:0.15 eAED:0.15 QI:323|1|0.87|1|0.85|0.87|8|0|820; (*GB) gi|225434891|ref|XP_002283273.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VZI8|FTSHA_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1;; (*TAIR) AT1G07510.1 (e_value=0.0) | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-2309380 FORWARD LENGTH=813;; (*ITAG) Solyc09g010950.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4306434-4314668 transcript_region:SL2.40ch09:4306434..4314668- go_terms:GO:0051082,GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_BACSU); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0051082,GO:0004176 NbS00016447g0005.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.25|1|1|4|0|96 NbS00040374g0002.1 protein AED:0.10 eAED:0.10 QI:108|0.83|0.85|1|1|1|7|254|478; (*GB) gi|328461713|gb|AEB15966.1| (e_value=0.0) ABA 8'-hydroxylase CYPA3 variant 1 [Solanum tuberosum];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT4G19230.2 (e_value=0.0) | Symbols: CYP707A1 | cytochrome P450, family 707, subfamily A, polypeptide 1 | chr4:10521524-10523566 FORWARD LENGTH=484;; (*ITAG) Solyc08g075320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56595351-56597724 transcript_region:SL2.40ch08:56595351..56597724- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00024702g0006.1 protein AED:0.05 eAED:0.05 QI:106|0.5|0.66|1|1|1|3|334|293; (*GB) gi|297841831|ref|XP_002888797.1| (e_value=3e-81) bet v I allergen family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=4e-82) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1;; (*TAIR) AT1G70830.1 (e_value=3e-83) | Symbols: MLP28 | MLP-like protein 28 | chr1:26710203-26711395 REVERSE LENGTH=335;; (*ITAG) Solyc00g323130.2.1 (e_value=4e-115) genomic_reference:SL2.40ch00 gene_region:21749238-21751331 transcript_region:SL2.40ch00:21749238..21751331+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00012813g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|0.66|0.75|4|0|578; (*GB) gi|356552204|ref|XP_003544459.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100780684 [Glycine max];; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.2 (e_value=0.0) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063061 REVERSE LENGTH=626;; (*ITAG) Solyc04g078990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61201799-61205926 transcript_region:SL2.40ch04:61201799..61205926- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00059366g0001.1 protein AED:0.06 eAED:0.06 QI:41|1|1|1|0|0|3|470|71; (*GB) gi|255545096|ref|XP_002513609.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G10865.1 (e_value=2e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:3614789-3615308 REVERSE LENGTH=71;; (*ITAG) Solyc03g117900.2.1 (e_value=2e-44) genomic_reference:SL2.40ch03 gene_region:60955512-60958727 transcript_region:SL2.40ch03:60955512..60958727+ functional_description:"Cytochrome c oxidase assembly protein (AHRD V1 **-- A8JCU9_CHLRE); contains Interpro domain(s) IPR018793 Cytochrome c oxidase assembly protein PET191, N-terminal "; NbS00030467g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|160; (*GB) gi|224069892|ref|XP_002303074.1| (e_value=7e-84) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRS9|CHIP_ARATH (e_value=8e-72) E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1;; (*TAIR) AT3G07370.1 (e_value=6e-73) | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70-interacting protein | chr3:2358323-2360301 REVERSE LENGTH=278;; (*ITAG) Solyc06g083150.2.1 (e_value=2e-90) genomic_reference:SL2.40ch06 gene_region:44977538-44982219 transcript_region:SL2.40ch06:44977538..44982219+ go_terms:GO:0034450 functional_description:"U-box domain-containing protein (AHRD V1 **-- C6HIA6_AJECH); contains Interpro domain(s) IPR003613 U box domain "; GO:0034450 NbS00019060g0006.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|487; (*GB) gi|18000074|gb|AAL54888.1|AF116915_1 (e_value=0.0) obtusifoliol-14-demethylase [Nicotiana tabacum];; (*SWP) sp|Q9SAA9|CP511_ARATH (e_value=0.0) Sterol 14-demethylase OS=Arabidopsis thaliana GN=CYP51G1 PE=1 SV=1;; (*TAIR) AT1G11680.1 (e_value=0.0) | Symbols: CYP51G1, EMB1738, CYP51A2, CYP51 | CYTOCHROME P450 51G1 | chr1:3938925-3940585 FORWARD LENGTH=488;; (*ITAG) Solyc01g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2241615-2244166 transcript_region:SL2.40ch01:2241615..2244166+ go_terms:GO:0008398 functional_description:"Cytochrome P450"; GO:0008398 NbS00019060g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|359479625|ref|XP_003632305.1| (e_value=1e-62) PREDICTED: uncharacterized protein LOC100855206 [Vitis vinifera];; (*TAIR) AT4G14830.1 (e_value=6e-41) | Symbols: HSP1 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22530.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510983-8511441 FORWARD LENGTH=152;; (*ITAG) Solyc09g065370.1.1 (e_value=4e-90) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59066135-59066623 transcript_region:SL2.40ch09:59066135..59066623- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00019060g0009.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.25|0.33|0.5|4|0|95 NbS00005099g0010.1 protein AED:0.10 eAED:0.10 QI:42|1|0.6|1|1|1|5|0|348; (*GB) gi|225456620|ref|XP_002269071.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100251842 isoform 1 [Vitis vinifera];; (*ITAG) Solyc06g071140.2.1 (e_value=5e-14) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00005099g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.85|1|1|1|7|0|274; (*GB) gi|255552828|ref|XP_002517457.1| (e_value=2e-141) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q08435|PMA1_NICPL (e_value=9e-64) Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1;; (*TAIR) AT2G07560.1 (e_value=3e-58) | Symbols: AHA6, HA6 | H(+)-ATPase 6 | chr2:3170394-3173952 REVERSE LENGTH=949;; (*ITAG) Solyc07g005040.2.1 (e_value=2e-71) genomic_reference:SL2.40ch07 gene_region:90358-92771 transcript_region:SL2.40ch07:90358..92771- go_terms:GO:0016020,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0016021 NbS00006106g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-53) hypothetical protein [Nicotiana tabacum]; NbS00006106g0007.1 protein AED:0.33 eAED:0.33 QI:131|0.44|0.4|0.8|0.44|0.5|10|0|768; (*GB) gi|111183161|gb|ABH07898.1| (e_value=0.0) leucine-rich repeat family protein [Solanum lycopersicum];; (*SWP) sp|C0LGD6|Y1570_ARATH (e_value=3e-17) Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1;; (*TAIR) AT1G28340.1 (e_value=2e-127) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc03g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:927641-933562 transcript_region:SL2.40ch03:927641..933562- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00006106g0011.1 protein AED:0.17 eAED:0.17 QI:114|0|0.25|0.75|0|0.25|4|0|346; (*GB) gi|225424623|ref|XP_002282288.1| (e_value=6e-68) PREDICTED: uncharacterized protein LOC100244057, partial [Vitis vinifera];; (*TAIR) AT3G26350.1 (e_value=6e-49) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink). | chr3:9653660-9654730 REVERSE LENGTH=356;; (*ITAG) Solyc05g013760.2.1 (e_value=2e-118) genomic_reference:SL2.40ch05 gene_region:7075993-7077644 transcript_region:SL2.40ch05:7075993..7077644+ functional_description:"Harpin-induced protein (AHRD V1 **-- B6T5S3_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00019591g0004.1 protein AED:0.01 eAED:0.01 QI:202|1|1|1|1|1|2|65|324; (*GB) gi|119331588|gb|ABL63120.1| (e_value=6e-88) AT-hook DNA-binding protein [Catharanthus roseus];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=3e-16) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT5G49700.1 (e_value=1e-58) | Symbols: | Predicted AT-hook DNA-binding family protein | chr5:20192599-20193429 FORWARD LENGTH=276;; (*ITAG) Solyc04g076220.2.1 (e_value=1e-124) genomic_reference:SL2.40ch04 gene_region:58757542-58758976 transcript_region:SL2.40ch04:58757542..58758976+ functional_description:"AT-hook motif nuclear localized protein 17 (AHRD V1 **-- Q9LTA2_ARATH); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00022676g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|225445328|ref|XP_002281500.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Vitis vinifera];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=2e-167) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT3G24330.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=500;; (*ITAG) Solyc05g006210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:876367-878630 transcript_region:SL2.40ch05:876367..878630+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00022676g0012.1 protein AED:0.17 eAED:0.17 QI:222|0.71|0.75|1|0.71|0.75|8|0|440; (*GB) gi|225445326|ref|XP_002281488.1| (e_value=6e-180) PREDICTED: tRNA (guanine-N(1)-)-methyltransferase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|F6HH45|TRM52_VITVI (e_value=2e-180) tRNA (guanine(37)-N1)-methyltransferase 2 OS=Vitis vinifera GN=VIT_11s0016g04350 PE=3 SV=1;; (*TAIR) AT3G56120.1 (e_value=9e-160) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20823243-20826357 FORWARD LENGTH=468;; (*ITAG) Solyc05g006200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:868417-875988 transcript_region:SL2.40ch05:868417..875988+ go_terms:GO:0016423,GO:0042802 functional_description:"tRNA (Guanine-N(1)-)-methyltransferase (AHRD V1 *-** A8N339_COPC7); contains Interpro domain(s) IPR003402 Protein of unknown function Met10 "; GO:0016423,GO:0042802 NbS00022676g0013.1 protein AED:0.34 eAED:0.50 QI:78|1|0.5|1|1|1|2|42|16 NbS00022676g0014.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|316; (*GB) gi|225445334|ref|XP_002284790.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100245830 [Vitis vinifera];; (*TAIR) AT4G32610.1 (e_value=1e-14) | Symbols: | copper ion binding | chr4:15728376-15729897 REVERSE LENGTH=315;; (*ITAG) Solyc05g018490.2.1 (e_value=7e-60) genomic_reference:SL2.40ch05 gene_region:22005205-22009758 transcript_region:SL2.40ch05:22005205..22009758- functional_description:"Early fruit mRNA (AHRD V1 *--- B6TAC1_MAIZE)"; NbS00035152g0005.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|574; (*GB) gi|225462201|ref|XP_002269984.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Vitis vinifera];; (*SWP) sp|A3KPF8|PP131_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1;; (*TAIR) AT1G79080.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29747102-29748832 REVERSE LENGTH=576;; (*ITAG) Solyc07g066390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65059324-65061057 transcript_region:SL2.40ch07:65059324..65061057- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVY0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00035152g0008.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|1|1|2|0|384; (*GB) gi|356528710|ref|XP_003532942.1| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100814066 [Glycine max];; (*TAIR) AT1G79060.1 (e_value=9e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). | chr1:29741873-29743063 FORWARD LENGTH=396;; (*ITAG) Solyc07g066350.1.1 (e_value=3e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65045913-65047115 transcript_region:SL2.40ch07:65045913..65047115- functional_description:"Unknown Protein (AHRD V1)"; NbS00035152g0022.1 protein AED:0.14 eAED:0.14 QI:232|0.92|1|1|1|1|15|594|754; (*GB) gi|255585028|ref|XP_002533224.1| (e_value=0.0) wd40 protein, putative [Ricinus communis];; (*SWP) sp|Q7ZVR1|WDR75_DANRE (e_value=2e-38) WD repeat-containing protein 75 OS=Danio rerio GN=wdr75 PE=2 SV=2;; (*TAIR) AT2G18900.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8188491-8192409 REVERSE LENGTH=804;; (*ITAG) Solyc07g066410.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65063199-65073697 transcript_region:SL2.40ch07:65063199..65073697- functional_description:"WD repeat protein (AHRD V1 ***- B6QUX1_PENMQ); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00035152g0007.1 protein AED:0.05 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|96 NbS00035152g0026.1 protein AED:0.33 eAED:0.37 QI:53|0.5|0.2|1|0.5|0.6|5|0|202; (*GB) gi|225462195|ref|XP_002269358.1| (e_value=2e-32) PREDICTED: uncharacterized protein LOC100257623 [Vitis vinifera];; (*TAIR) AT1G79070.1 (e_value=6e-27) | Symbols: | SNARE-associated protein-related | chr1:29745018-29745807 REVERSE LENGTH=138;; (*ITAG) Solyc07g066370.2.1 (e_value=1e-64) genomic_reference:SL2.40ch07 gene_region:65051736-65054766 transcript_region:SL2.40ch07:65051736..65054766- functional_description:"Unknown Protein (AHRD V1)"; NbS00035152g0029.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|123; (*GB) gi|297738144|emb|CBI27345.3| (e_value=2e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G12960.1 (e_value=8e-21) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4136546-4136806 FORWARD LENGTH=86;; (*ITAG) Solyc07g066400.1.1 (e_value=3e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:65062293-65062697 transcript_region:SL2.40ch07:65062293..65062697+ functional_description:"Seed maturation protein (AHRD V1 *-*- Q2XSI1_9FABA)"; NbS00035152g0018.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|305671961|gb|ADM63350.1| (e_value=2e-41) photosystem II cp47 protein [Aralidium pinnatifidum];; (*SWP) sp|A4QJM5|PSBB_AETGR (e_value=2e-41) Photosystem II CP47 chlorophyll apoprotein OS=Aethionema grandiflora GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=1e-41) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00035152g0024.1 protein AED:0.26 eAED:0.26 QI:0|1|0.92|1|0.69|0.78|14|405|631; (*GB) gi|359494535|ref|XP_002266085.2| (e_value=0.0) PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4-like [Vitis vinifera];; (*SWP) sp|P0C1I6|PPIL4_RHIO9 (e_value=2e-119) Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp13 PE=3 SV=1;; (*TAIR) AT1G53720.1 (e_value=0.0) | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20057012-20059508 FORWARD LENGTH=506;; (*ITAG) Solyc07g066420.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65076198-65085928 transcript_region:SL2.40ch07:65076198..65085928+ go_terms:GO:0003676,GO:0006457,GO:0008270,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase-like protein (AHRD V1 *-*- D0NAF5_PHYIN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003676,GO:0006457,GO:0008270,GO:0000166 NbS00005495g0003.1 protein AED:0.44 eAED:0.45 QI:0|1|0.33|1|1|1|3|0|128; (*GB) gi|356532141|ref|XP_003534632.1| (e_value=5e-88) PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 2 [Glycine max];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=5e-88) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT5G41700.4 (e_value=4e-89) | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme 8 | chr5:16676072-16677223 FORWARD LENGTH=149;; (*ITAG) Solyc10g011740.2.1 (e_value=8e-91) genomic_reference:SL2.40ch10 gene_region:3983198-3987001 transcript_region:SL2.40ch10:3983198..3987001- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 8 (AHRD V1 **** UBC8_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00048926g0004.1 protein AED:0.23 eAED:0.25 QI:0|0.2|0|1|0.6|0.33|6|0|255; (*ITAG) Solyc01g073870.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00028897g0008.1 protein AED:0.17 eAED:0.17 QI:1107|0.81|0.70|1|0.25|0.35|17|0|351; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=5e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=4e-14) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09890.1 (e_value=6e-98) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617;; (*ITAG) Solyc11g011300.1.1 (e_value=6e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4340301-4347968 transcript_region:SL2.40ch11:4340301..4347968+ go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00010967g0020.1 protein AED:0.00 eAED:0.00 QI:36|1|1|1|1|1|2|162|297; (*GB) gi|356521382|ref|XP_003529335.1| (e_value=5e-110) PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max];; (*SWP) sp|Q9ST69|RR5_SPIOL (e_value=5e-107) 30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1;; (*TAIR) AT2G33800.1 (e_value=4e-106) | Symbols: | Ribosomal protein S5 family protein | chr2:14300925-14302352 REVERSE LENGTH=303;; (*ITAG) Solyc02g077990.2.1 (e_value=4e-144) genomic_reference:SL2.40ch02 gene_region:37374128-37377628 transcript_region:SL2.40ch02:37374128..37377628- go_terms:GO:0005840,GO:0015935,GO:0005622 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- B6TT32_MAIZE); contains Interpro domain(s) IPR005712 Ribosomal protein S5, bacterial-type "; GO:0005840,GO:0015935,GO:0005622 NbS00010967g0023.1 protein AED:0.02 eAED:0.02 QI:1119|1|0.87|1|0.71|0.75|8|0|238; (*ITAG) Solyc02g078000.2.1 (e_value=6e-52) genomic_reference:SL2.40ch02 gene_region:37378561-37392436 transcript_region:SL2.40ch02:37378561..37392436- functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00010967g0016.1 protein AED:0.12 eAED:0.12 QI:265|0.75|0.66|1|0.5|0.44|9|0|1067; (*GB) gi|255536789|ref|XP_002509461.1| (e_value=0.0) smg-7, putative [Ricinus communis];; (*SWP) sp|Q5RAK6|EST1A_PONAB (e_value=4e-19) Telomerase-binding protein EST1A OS=Pongo abelii GN=SMG6 PE=2 SV=1;; (*TAIR) AT1G28260.2 (e_value=3e-121) | Symbols: | Telomerase activating protein Est1 | chr1:9875776-9878782 REVERSE LENGTH=880;; (*ITAG) Solyc02g078020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37405063-37409811 transcript_region:SL2.40ch02:37405063..37409811- functional_description:"Binding protein (Fragment) (AHRD V1 **-- D7KCU4_ARALY); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00010967g0025.1 protein AED:0.15 eAED:0.15 QI:150|0.71|0.6|1|0.85|0.86|15|0|565; (*GB) gi|356557699|ref|XP_003547151.1| (e_value=1e-88) PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=3e-67) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.2 (e_value=6e-69) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=787;; (*ITAG) Solyc02g078000.2.1 (e_value=6e-117) genomic_reference:SL2.40ch02 gene_region:37378561-37392436 transcript_region:SL2.40ch02:37378561..37392436- functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00010967g0018.1 protein AED:0.24 eAED:0.24 QI:0|1|0.9|1|1|1|10|217|481; (*GB) gi|356557699|ref|XP_003547151.1| (e_value=2e-119) PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=1e-96) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT4G32551.1 (e_value=7e-98) | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931;; (*ITAG) Solyc02g078000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37378561-37392436 transcript_region:SL2.40ch02:37378561..37392436- functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016283g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.4|0.5|0.66|0.6|0.5|6|630|79 NbS00027140g0011.1 protein AED:0.15 eAED:0.15 QI:191|1|1|1|1|1|11|257|347; (*GB) gi|225444977|ref|XP_002282672.1| (e_value=0.0) PREDICTED: pollen-specific protein SF21 [Vitis vinifera];; (*SWP) sp|O23969|SF21_HELAN (e_value=3e-177) Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1;; (*TAIR) AT5G56750.1 (e_value=0.0) | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:22957986-22960606 FORWARD LENGTH=346;; (*ITAG) Solyc05g026360.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:40928819-40932266 transcript_region:SL2.40ch05:40928819..40932266+ go_terms:GO:0005515 functional_description:"N-myc downstream regulated (Fragment) (AHRD V1 **-- Q177C7_AEDAE); contains Interpro domain(s) IPR015511 Pollen specific protein SF21 "; GO:0005515 NbS00027140g0012.1 protein AED:0.28 eAED:0.28 QI:171|0.72|0.73|1|0.55|0.63|19|452|522; (*GB) gi|225444959|ref|XP_002282458.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera];; (*SWP) sp|Q9ZUN3|KEA4_ARATH (e_value=0.0) K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2;; (*TAIR) AT2G19600.1 (e_value=0.0) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc07g026670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:30206942-30221961 transcript_region:SL2.40ch07:30206942..30221961+ go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 **** Q46EP4_METBF); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00048704g0005.1 protein AED:0.12 eAED:0.12 QI:654|1|1|1|1|1|2|413|176; (*GB) gi|255558882|ref|XP_002520464.1| (e_value=2e-45) heat-shock protein, putative [Ricinus communis];; (*SWP) sp|P27880|HSP12_MEDSA (e_value=4e-46) 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1;; (*TAIR) AT1G07400.1 (e_value=2e-44) | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157;; (*ITAG) Solyc09g011710.2.1 (e_value=4e-83) genomic_reference:SL2.40ch09 gene_region:4976527-4978000 transcript_region:SL2.40ch09:4976527..4978000- go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B4F976_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0051082 NbS00048704g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|388517907|gb|AFK47015.1| (e_value=7e-35) unknown [Medicago truncatula];; (*SWP) sp|Q39065|COPT1_ARATH (e_value=2e-22) Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2;; (*TAIR) AT5G59030.1 (e_value=2e-23) | Symbols: COPT1 | copper transporter 1 | chr5:23833945-23834457 REVERSE LENGTH=170;; (*ITAG) Solyc09g011700.1.1 (e_value=1e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4974445-4974846 transcript_region:SL2.40ch09:4974445..4974846- go_terms:GO:0015089 functional_description:"Copper transporter (AHRD V1 **** B9HC67_POPTR); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0015089 NbS00049733g0009.1 protein AED:0.41 eAED:0.43 QI:155|0.5|0.6|1|0.5|0.4|5|0|174; (*GB) gi|1395193|dbj|BAA12064.1| (e_value=2e-55) RNA-binding protein RZ-1 [Nicotiana sylvestris];; (*SWP) sp|Q43472|GRP_HORVU (e_value=3e-32) Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1;; (*TAIR) AT3G26420.1 (e_value=2e-43) | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:9671953-9673055 FORWARD LENGTH=245;; (*ITAG) Solyc01g104840.2.1 (e_value=4e-53) genomic_reference:SL2.40ch01 gene_region:84931483-84935040 transcript_region:SL2.40ch01:84931483..84935040- go_terms:GO:0003702 functional_description:"RNA-binding protein RZ-1 (AHRD V1 **** D0V0M9_CAPAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003702 NbS00049733g0008.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|0|0.5|2|0|89 NbS00049733g0007.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|225447854|ref|XP_002268564.1| (e_value=1e-20) PREDICTED: vacuolar iron transporter homolog 4-like [Vitis vinifera];; (*ITAG) Solyc01g104800.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:84921428-84922286 transcript_region:SL2.40ch01:84921428..84922286+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00017539g0002.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|109 NbS00000689g0007.1 protein AED:0.09 eAED:0.09 QI:290|1|1|1|0.83|0.85|7|428|509; (*GB) gi|255554909|ref|XP_002518492.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-137) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g080490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39271713-39275892 transcript_region:SL2.40ch02:39271713..39275892- go_terms:GO:0015559 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q10HY1_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00000689g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|359483369|ref|XP_003632945.1| (e_value=7e-65) PREDICTED: uncharacterized protein LOC100855186 [Vitis vinifera];; (*TAIR) AT1G11700.1 (e_value=2e-37) | Symbols: | Protein of unknown function, DUF584 | chr1:3945852-3946457 FORWARD LENGTH=201;; (*ITAG) Solyc02g080510.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39294750-39295370 transcript_region:SL2.40ch02:39294750..39295370- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-*- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00005067g0011.1 protein AED:0.81 eAED:0.81 QI:42|0|0|0.5|0|0.5|2|0|46 NbS00005067g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc08g023250.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:15183920-15184195 transcript_region:SL2.40ch08:15183920..15184195+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A7I8L2_METB6); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00005067g0012.1 protein AED:0.28 eAED:0.30 QI:0|0.5|0.2|1|0.5|0.8|5|0|265; (*GB) gi|22328578|ref|NP_192945.2| (e_value=2e-72) AT-hook motif nuclear-localized protein 1 [Arabidopsis thaliana];; (*TAIR) AT4G12080.1 (e_value=4e-75) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g007530.2.1 (e_value=2e-82) genomic_reference:SL2.40ch08 gene_region:2071921-2078161 transcript_region:SL2.40ch08:2071921..2078161- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00011813g0010.1 protein AED:0.05 eAED:0.05 QI:168|0.75|0.55|1|0.87|0.77|9|365|1466; (*GB) gi|225425888|ref|XP_002266601.1| (e_value=0.0) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=0.0) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.2 (e_value=0.0) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1489;; (*ITAG) Solyc05g014380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8239463-8243866 transcript_region:SL2.40ch05:8239463..8243866+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 ***- B9HTC0_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00011813g0009.1 protein AED:0.21 eAED:0.24 QI:185|0.63|0.83|1|0.90|0.83|12|369|310; (*GB) gi|157042763|gb|ABV02033.1| (e_value=5e-167) glyceraldehyde 3-phosphate dehydrogenase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P25858|G3PC_ARATH (e_value=1e-156) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=1 SV=2;; (*TAIR) AT1G13440.2 (e_value=1e-162) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc05g014470.2.1 (e_value=3e-164) genomic_reference:SL2.40ch05 gene_region:8322381-8324881 transcript_region:SL2.40ch05:8322381..8324881+ go_terms:GO:0004365 functional_description:"Glyceraldehyde 3-phosphate dehydrogenase (AHRD V1 **** Q8LK04_SOLTU); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00020611g0015.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.6|1|0.75|0.8|5|0|367; (*GB) gi|224061839|ref|XP_002300624.1| (e_value=3e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33620.4 (e_value=2e-51) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc12g094710.1.1 (e_value=2e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63190934-63194536 transcript_region:SL2.40ch12:63190934..63194536- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 *-*- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00020611g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.8|1|0.66|0.7|10|498|265; (*GB) gi|225457650|ref|XP_002273332.1| (e_value=1e-84) PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9S720|PPD3_ARATH (e_value=1e-80) PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2;; (*TAIR) AT1G76450.1 (e_value=1e-81) | Symbols: | Photosystem II reaction center PsbP family protein | chr1:28684618-28686109 FORWARD LENGTH=247;; (*ITAG) Solyc12g094720.1.1 (e_value=6e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63196567-63200218 transcript_region:SL2.40ch12:63196567..63200218+ functional_description:"PsbP domain-containing protein 3, chloroplastic (AHRD V1 ***- PPD3_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; NbS00020611g0017.1 protein AED:0.25 eAED:0.37 QI:0|0|0.33|1|0|0|3|0|103; (*GB) gi|224065647|ref|XP_002301901.1| (e_value=1e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LM66|XCP2_ARATH (e_value=8e-40) Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2;; (*TAIR) AT1G20850.1 (e_value=6e-41) | Symbols: XCP2 | xylem cysteine peptidase 2 | chr1:7252208-7253537 FORWARD LENGTH=356;; (*ITAG) Solyc04g082710.2.1 (e_value=3e-44) genomic_reference:SL2.40ch04 gene_region:63891625-63893068 transcript_region:SL2.40ch04:63891625..63893068+ go_terms:GO:0030984,GO:0032403 functional_description:"Cathepsin B-like cysteine proteinase 3 (AHRD V1 **-- CPR3_CAEEL); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0030984,GO:0032403 NbS00020611g0011.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|0|1|0|60; (*GB) gi|52546920|gb|AAU81593.1| (e_value=2e-34) cysteine proteinase [Petunia x hybrida];; (*SWP) sp|O65493|XCP1_ARATH (e_value=2e-32) Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1;; (*TAIR) AT4G35350.2 (e_value=9e-35) | Symbols: XCP1 | xylem cysteine peptidase 1 | chr4:16810529-16811578 FORWARD LENGTH=288;; (*ITAG) Solyc12g094700.1.1 (e_value=5e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63186285-63189004 transcript_region:SL2.40ch12:63186285..63189004+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00045109g0001.1 protein AED:0.00 eAED:0.00 QI:278|0|0.5|1|0|0.5|2|559|72; (*GB) gi|350540006|ref|NP_001233840.1| (e_value=2e-37) flavonoid biosynthesis oxidoreductase protein [Solanum lycopersicum];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=2e-23) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT5G24530.1 (e_value=2e-35) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc03g080190.2.1 (e_value=2e-41) genomic_reference:SL2.40ch03 gene_region:45625441-45630380 transcript_region:SL2.40ch03:45625441..45630380- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase-like protein (AHRD V1 **-- Q9FLV0_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00045109g0006.1 protein AED:0.02 eAED:0.02 QI:182|1|1|1|1|1|4|383|363; (*GB) gi|396589|emb|CAA52461.1| (e_value=0.0) catechol O-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9FQY8|COMT1_CAPAN (e_value=0.0) Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2;; (*TAIR) AT5G54160.1 (e_value=0.0) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc03g080180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45613423-45617312 transcript_region:SL2.40ch03:45613423..45617312+ go_terms:GO:0017096 functional_description:"O-methyltransferase (AHRD V1 **** Q9LWB8_9ROSI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0017096 NbS00000615g0107.1 protein AED:0.12 eAED:0.12 QI:89|0.75|0.8|1|1|1|5|243|407 NbS00018772g0001.1 protein AED:0.14 eAED:0.24 QI:0|0.57|0.5|0.87|1|1|8|0|366; (*GB) gi|297746351|emb|CBI16407.3| (e_value=8e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YY75|NEK6_ORYSJ (e_value=8e-90) Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=2 SV=2;; (*TAIR) AT3G20860.1 (e_value=7e-80) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc11g061960.1.1 (e_value=4e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45753595-45760507 transcript_region:SL2.40ch11:45753595..45760507+ go_terms:GO:0019903 functional_description:"Serine/threonine kinase (AHRD V1 *-*- C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019903 NbS00033933g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|787; (*GB) gi|255573210|ref|XP_002527534.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9XID3|Y1343_ARATH (e_value=3e-114) G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1;; (*TAIR) AT1G34300.1 (e_value=2e-115) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc03g005130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:84382-86742 transcript_region:SL2.40ch03:84382..86742+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- B6ST43_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00033933g0011.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|3|0|181; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00033933g0012.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-41) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00029065g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.4|0.6|0.75|0.8|5|0|389; (*GB) gi|548491|sp|Q05967.1|PGLR_TOBAC (e_value=0.0) RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor;; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=0.0) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G07820.1 (e_value=6e-127) | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391;; (*ITAG) Solyc07g044870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55248946-55251738 transcript_region:SL2.40ch07:55248946..55251738+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00029065g0009.1 protein AED:0.20 eAED:0.20 QI:139|1|1|1|0.6|0.5|6|393|248; (*GB) gi|255561156|ref|XP_002521590.1| (e_value=3e-134) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SS37|RTNLH_ARATH (e_value=4e-112) Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1;; (*TAIR) AT3G10260.2 (e_value=3e-113) | Symbols: | Reticulon family protein | chr3:3171413-3172508 REVERSE LENGTH=247;; (*ITAG) Solyc12g006290.1.1 (e_value=2e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:801938-804732 transcript_region:SL2.40ch12:801938..804732- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7L8W9_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00029065g0015.1 protein AED:0.07 eAED:0.08 QI:0|0.4|0.33|0.83|0.4|0.33|6|0|483; (*GB) gi|548491|sp|Q05967.1|PGLR_TOBAC (e_value=8e-163) RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor;; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=2e-164) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT5G48140.1 (e_value=9e-81) | Symbols: | Pectin lyase-like superfamily protein | chr5:19518907-19520412 REVERSE LENGTH=395;; (*ITAG) Solyc00g030510.2.1 (e_value=2e-137) genomic_reference:SL2.40ch00 gene_region:12605204-12607615 transcript_region:SL2.40ch00:12605204..12607615+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00029065g0014.1 protein AED:0.42 eAED:0.66 QI:0|0|0.33|1|0.2|0.5|6|48|142; (*GB) gi|224107479|ref|XP_002314493.1| (e_value=9e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23480.2 (e_value=5e-19) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8420284-8422894 FORWARD LENGTH=492;; (*ITAG) Solyc09g090510.2.1 (e_value=5e-28) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00012342g0001.1 protein AED:0.33 eAED:0.70 QI:0|0|0|1|1|1|2|0|175; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00061347g0003.1 protein AED:0.21 eAED:0.21 QI:146|1|1|1|1|1|4|222|288; (*GB) gi|225445174|ref|XP_002284118.1| (e_value=4e-100) PREDICTED: auxin-responsive protein IAA27 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZSY8|IAA27_ARATH (e_value=1e-75) Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1;; (*TAIR) AT4G29080.1 (e_value=1e-76) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305;; (*ITAG) Solyc12g007230.1.1 (e_value=5e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1648825-1652254 transcript_region:SL2.40ch12:1648825..1652254+ go_terms:GO:0005634,GO:0046983 functional_description:"Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005634,GO:0046983 NbS00061937g0001.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|439; (*GB) gi|15217764|ref|NP_176663.1| (e_value=3e-139) aspartyl protease-like protein [Arabidopsis thaliana];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=3e-116) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=7e-142) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc01g081370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73100345-73101704 transcript_region:SL2.40ch01:73100345..73101704- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00003200g0015.1 protein AED:0.23 eAED:0.24 QI:0|0.69|0.78|1|0.53|0.64|14|218|990; (*GB) gi|225460139|ref|XP_002275897.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C9I3|PP115_ARATH (e_value=1e-177) Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1;; (*TAIR) AT1G71460.1 (e_value=9e-179) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:26928247-26930316 REVERSE LENGTH=689;; (*ITAG) Solyc07g052590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58387932-58389956 transcript_region:SL2.40ch07:58387932..58389956- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003200g0004.1 protein AED:0.28 eAED:0.28 QI:488|0.85|0.87|1|0.28|0.25|8|1358|107; (*GB) gi|225447334|ref|XP_002280408.1| (e_value=2e-15) PREDICTED: traB domain-containing protein isoform 1 [Vitis vinifera];; (*TAIR) AT1G05270.1 (e_value=2e-12) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=4e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00003200g0002.1 protein AED:0.58 eAED:0.64 QI:0|1|0|1|1|1|2|0|78; (*GB) gi|224095744|ref|XP_002310462.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05270.1 (e_value=5e-26) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=2e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00033538g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|255578609|ref|XP_002530166.1| (e_value=8e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G11600.1 (e_value=1e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3667337-3667690 FORWARD LENGTH=117;; (*ITAG) Solyc06g073990.1.1 (e_value=5e-42) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:42126421-42126780 transcript_region:SL2.40ch06:42126421..42126780+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033538g0008.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-14) hypothetical protein [Nicotiana tabacum]; NbS00033538g0007.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|75; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-26) hypothetical protein [Nicotiana tabacum]; NbS00027758g0009.1 protein AED:0.02 eAED:0.02 QI:1676|1|1|1|0.5|0.33|3|172|242; (*GB) gi|356537708|ref|XP_003537367.1| (e_value=8e-127) PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=8e-114) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=6e-115) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc06g082610.2.1 (e_value=1e-144) genomic_reference:SL2.40ch06 gene_region:44662023-44664895 transcript_region:SL2.40ch06:44662023..44664895- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00027758g0012.1 protein AED:0.25 eAED:0.26 QI:91|0.8|0.83|1|1|1|6|454|417; (*GB) gi|1709798|sp|P54778.1|PRS6B_SOLTU (e_value=0.0) RecName: Full=26S protease regulatory subunit 6B homolog;; (*SWP) sp|P54778|PRS6B_SOLTU (e_value=0.0) 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58290.1 (e_value=0.0) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44672378-44677754 transcript_region:SL2.40ch06:44672378..44677754- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00027758g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|3065895|gb|AAC14323.1| (e_value=5e-71) TSI1 [Nicotiana tabacum];; (*SWP) sp|O04682|PTI6_SOLLC (e_value=4e-60) Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1;; (*TAIR) AT4G27950.1 (e_value=1e-23) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g082590.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44653700-44654446 transcript_region:SL2.40ch06:44653700..44654446- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR017392 Pathogenesis-related genes transcriptional activator PTI6 "; GO:0003677,GO:0006355 NbS00027758g0010.1 protein AED:0.44 eAED:0.44 QI:0|0.66|0.25|0.75|1|1|4|0|148; (*GB) gi|350536447|ref|NP_001234247.1| (e_value=9e-107) ubiquitin-conjugating enzyme E2-17 kDa [Solanum lycopersicum];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=3e-108) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=4e-108) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc06g082600.2.1 (e_value=2e-109) genomic_reference:SL2.40ch06 gene_region:44657000-44661486 transcript_region:SL2.40ch06:44657000..44661486- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 **** Q2PYY4_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00013721g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|518; (*GB) gi|33340517|gb|AAQ14854.1|AF321140_1 (e_value=0.0) S-adenosylmethionine synthase [Nicotiana tabacum];; (*SWP) sp|Q6SYB9|METK2_TOBAC (e_value=0.0) S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1;; (*TAIR) AT2G36880.2 (e_value=0.0) | Symbols: MAT3 | methionine adenosyltransferase 3 | chr2:15479721-15480893 REVERSE LENGTH=390;; (*ITAG) Solyc10g083970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62989745-62990917 transcript_region:SL2.40ch10:62989745..62990917- go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00024839g0002.1 protein AED:0.37 eAED:0.43 QI:0|0|0|1|0|0|3|0|105; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-24) hypothetical protein [Nicotiana tabacum]; NbS00029037g0002.1 protein AED:0.09 eAED:0.09 QI:169|1|1|1|1|1|2|206|224; (*GB) gi|255548047|ref|XP_002515080.1| (e_value=9e-79) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G01410.1 (e_value=3e-51) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:578308-578991 FORWARD LENGTH=227;; (*ITAG) Solyc10g005040.2.1 (e_value=2e-102) genomic_reference:SL2.40ch10 gene_region:47927-49272 transcript_region:SL2.40ch10:47927..49272+ go_terms:GO:0032776 functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; GO:0032776 NbS00029037g0005.1 protein AED:0.18 eAED:0.18 QI:214|1|1|1|1|0.87|8|460|598; (*GB) gi|225453624|ref|XP_002266192.1| (e_value=3e-114) PREDICTED: two-component response regulator-like APRR5-like [Vitis vinifera];; (*SWP) sp|Q6LA42|APRR5_ARATH (e_value=4e-67) Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2;; (*TAIR) AT5G24470.1 (e_value=5e-67) | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667;; (*ITAG) Solyc10g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:41126-47459 transcript_region:SL2.40ch10:41126..47459+ go_terms:GO:0006355 functional_description:"Pseudo-response regulator 9 (AHRD V1 ***- D0PPG9_CASSA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00009944g0008.1 protein AED:0.38 eAED:0.38 QI:206|1|1|1|0.5|0.4|5|335|139; (*GB) gi|8895787|gb|AAF81108.1|AF232062_1 (e_value=3e-79) multiprotein bridging factor 1 [Solanum tuberosum];; (*SWP) sp|Q9LXT3|MBF1B_ARATH (e_value=4e-69) Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1;; (*TAIR) AT3G58680.1 (e_value=3e-70) | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142;; (*ITAG) Solyc10g007350.2.1 (e_value=6e-82) genomic_reference:SL2.40ch10 gene_region:1740404-1747481 transcript_region:SL2.40ch10:1740404..1747481+ go_terms:GO:0003713 functional_description:"Multiprotein bridging factor 1 (AHRD V1 ***- Q9LL86_SOLTU); contains Interpro domain(s) IPR013729 Multiprotein bridging factor 1, N-terminal "; GO:0003713 NbS00009944g0009.1 protein AED:0.31 eAED:0.34 QI:0|0.5|0.66|1|0.5|0.66|3|0|482; (*GB) gi|359485371|ref|XP_002273873.2| (e_value=5e-153) PREDICTED: uncharacterized protein LOC100255678 [Vitis vinifera];; (*TAIR) AT4G28260.2 (e_value=3e-132) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14005048-14006762 FORWARD LENGTH=516;; (*ITAG) Solyc10g008420.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2540041-2542828 transcript_region:SL2.40ch10:2540041..2542828- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00009944g0011.1 protein AED:0.50 eAED:0.60 QI:0|0|0|1|0|0.33|3|0|83; (*ITAG) Solyc10g008420.2.1 (e_value=2e-15) genomic_reference:SL2.40ch10 gene_region:2540041-2542828 transcript_region:SL2.40ch10:2540041..2542828- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00009944g0010.1 protein AED:0.47 eAED:0.61 QI:7|0|0|1|0|0|2|0|64 NbS00033698g0006.1 protein AED:0.12 eAED:0.12 QI:141|0.88|0.9|1|0.55|0.6|10|330|333; (*GB) gi|297736903|emb|CBI26104.3| (e_value=2e-166) unnamed protein product [Vitis vinifera];; (*SWP) sp|P19515|LIP_RHIMI (e_value=7e-19) Lipase OS=Rhizomucor miehei PE=1 SV=2;; (*TAIR) AT5G18640.1 (e_value=1e-145) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6213283-6215494 FORWARD LENGTH=357;; (*ITAG) Solyc06g054550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33782976-33790802 transcript_region:SL2.40ch06:33782976..33790802- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00044616g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|1160; (*GB) gi|255564292|ref|XP_002523143.1| (e_value=0.0) Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis];; (*SWP) sp|Q9SRW9|CSLD5_ARATH (e_value=0.0) Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1;; (*TAIR) AT1G02730.1 (e_value=0.0) | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like D5 | chr1:594697-598473 REVERSE LENGTH=1181;; (*ITAG) Solyc09g075550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62738261-62743099 transcript_region:SL2.40ch09:62738261..62743099+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like D6 (AHRD V1 **** Q09HT5_PHYPA); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00044616g0007.1 protein AED:0.30 eAED:0.34 QI:0|0|0|0.4|0.75|0.8|5|0|329; (*ITAG) Solyc09g059490.1.1 (e_value=3e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011208g0006.1 protein AED:0.18 eAED:0.20 QI:0|0.81|0.83|1|1|1|12|47|443; (*GB) gi|225430786|ref|XP_002270129.1| (e_value=1e-97) PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Vitis vinifera];; (*SWP) sp|Q42404|RU17_ARATH (e_value=9e-97) U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1;; (*TAIR) AT3G50670.1 (e_value=7e-98) | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE LENGTH=427;; (*ITAG) Solyc02g085420.2.1 (e_value=5e-123) genomic_reference:SL2.40ch02 gene_region:42904687-42910671 transcript_region:SL2.40ch02:42904687..42910671- go_terms:GO:0003676,GO:0000166 functional_description:"U1 small nuclear ribonucleoprotein (AHRD V1 *-*- A8J8G5_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00006878g0020.1 protein AED:0.22 eAED:0.22 QI:164|0.83|0.85|1|0.5|0.28|7|362|302; (*GB) gi|224089993|ref|XP_002308897.1| (e_value=7e-116) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10250.2 (e_value=4e-108) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc10g079710.1.1 (e_value=9e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60536606-60540135 transcript_region:SL2.40ch10:60536606..60540135+ functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 ***- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00006878g0021.1 protein AED:0.25 eAED:0.25 QI:92|0.33|0.25|1|0.66|0.5|4|0|591; (*GB) gi|225445124|ref|XP_002283858.1| (e_value=0.0) PREDICTED: SNW domain-containing protein 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q5R7R9|SNW1_PONAB (e_value=2e-125) SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1;; (*TAIR) AT1G77180.2 (e_value=0.0) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613;; (*ITAG) Solyc12g008370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00006878g0022.1 protein AED:0.30 eAED:0.30 QI:0|1|0.75|1|1|1|4|0|166; (*GB) gi|147803507|emb|CAN68722.1| (e_value=1e-96) hypothetical protein VITISV_033681 [Vitis vinifera];; (*SWP) sp|O22165|RLP24_ARATH (e_value=3e-81) Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1;; (*TAIR) AT2G44860.2 (e_value=2e-82) | Symbols: | Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159;; (*ITAG) Solyc10g078660.1.1 (e_value=2e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59721816-59723828 transcript_region:SL2.40ch10:59721816..59723828+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- Q16LE3_AEDAE); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00006878g0024.1 protein AED:0.09 eAED:0.09 QI:0|0.73|0.75|1|0.86|0.81|16|191|1273; (*GB) gi|359481908|ref|XP_003632691.1| (e_value=0.0) PREDICTED: condensin complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9YHY6|CND1_XENLA (e_value=2e-79) Condensin complex subunit 1 OS=Xenopus laevis GN=ncapd2 PE=1 SV=1;; (*TAIR) AT3G57060.1 (e_value=0.0) | Symbols: | binding | chr3:21115078-21121051 REVERSE LENGTH=1396;; (*ITAG) Solyc10g079730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60549132-60561529 transcript_region:SL2.40ch10:60549132..60561529- go_terms:GO:0005634,GO:0005488 functional_description:"Condensin complex subunit 1 (AHRD V1 ***- B9H949_POPTR); contains Interpro domain(s) IPR007673 Non-SMC condensin subunit, XCAP-D2/Cnd1 "; GO:0005634,GO:0005488 NbS00006878g0032.1 protein AED:0.20 eAED:0.20 QI:0|0.72|0.65|0.97|0.78|0.81|38|473|1691; (*GB) gi|297739784|emb|CBI29966.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74835|RRP5_SCHPO (e_value=3e-84) rRNA biogenesis protein rrp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp5 PE=1 SV=1;; (*TAIR) AT3G11964.1 (e_value=0.0) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00006878g0029.1 protein AED:0.31 eAED:0.32 QI:89|0.92|0.78|1|0.69|0.78|14|0|498; (*GB) gi|8439539|gb|AAF74980.1|AF082890_1 (e_value=0.0) cystathionine beta-lyase [Solanum tuberosum];; (*SWP) sp|P53780|METC_ARATH (e_value=0.0) Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1;; (*TAIR) AT3G57050.1 (e_value=0.0) | Symbols: CBL | cystathionine beta-lyase | chr3:21111939-21114521 REVERSE LENGTH=464;; (*ITAG) Solyc10g079720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60540899-60547437 transcript_region:SL2.40ch10:60540899..60547437- go_terms:GO:0006520,GO:0071266,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- C1PDC6_BACCO); contains Interpro domain(s) IPR006238 Cystathionine beta-lyase, eukaryotic "; GO:0006520,GO:0071266,GO:0030170 NbS00006878g0031.1 protein AED:0.69 eAED:0.69 QI:6|0|0|0.33|1|1|3|0|93; (*ITAG) Solyc03g051900.2.1 (e_value=1e-18) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00051720g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|359476816|ref|XP_002265844.2| (e_value=1e-42) PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=6e-29) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT2G17880.1 (e_value=2e-30) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160;; (*ITAG) Solyc02g062160.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28313777-28314241 transcript_region:SL2.40ch02:28313777..28314241- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00004752g0002.1 protein AED:0.08 eAED:0.08 QI:333|0.66|0.85|0.85|0.33|0.42|7|307|300; (*GB) gi|374082402|gb|AEY81371.1| (e_value=5e-139) longevity assurance protein 1-like protein [Gossypium hirsutum];; (*SWP) sp|Q9LJK3|LAG12_ARATH (e_value=9e-125) LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1;; (*TAIR) AT3G19260.1 (e_value=7e-126) | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 | chr3:6669448-6671257 REVERSE LENGTH=296;; (*ITAG) Solyc01g108230.2.1 (e_value=2e-169) genomic_reference:SL2.40ch01 gene_region:87342405-87350641 transcript_region:SL2.40ch01:87342405..87350641+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00056538g0007.1 protein AED:0.02 eAED:0.02 QI:439|1|1|1|1|1|3|229|365; (*GB) gi|225427981|ref|XP_002277548.1| (e_value=2e-117) PREDICTED: pathogenesis-related protein 5 [Vitis vinifera];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=5e-73) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G38660.1 (e_value=8e-108) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067984 REVERSE LENGTH=345;; (*ITAG) Solyc01g111330.2.1 (e_value=1e-150) genomic_reference:SL2.40ch01 gene_region:89376094-89377968 transcript_region:SL2.40ch01:89376094..89377968+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00056538g0008.1 protein AED:0.18 eAED:0.18 QI:228|1|0.85|1|1|1|7|312|228; (*GB) gi|388494638|gb|AFK35385.1| (e_value=2e-107) unknown [Medicago truncatula];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=6e-74) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT4G34960.1 (e_value=4e-103) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:16648865-16650646 FORWARD LENGTH=224;; (*ITAG) Solyc01g111360.2.1 (e_value=4e-137) genomic_reference:SL2.40ch01 gene_region:89397602-89402091 transcript_region:SL2.40ch01:89397602..89402091+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** D7MDH2_ARALY); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00021436g0007.1 protein AED:0.34 eAED:0.37 QI:55|1|0|1|1|1|2|0|390; (*GB) gi|225460995|ref|XP_002278340.1| (e_value=1e-47) PREDICTED: uncharacterized protein LOC100257339 [Vitis vinifera];; (*TAIR) AT5G54930.2 (e_value=2e-23) | Symbols: | AT hook motif-containing protein | chr5:22305897-22306839 REVERSE LENGTH=283;; (*ITAG) Solyc12g005110.1.1 (e_value=2e-120) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:93794-94826 transcript_region:SL2.40ch12:93794..94826+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 **-- Q9FFT7_ARATH); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00021436g0008.1 protein AED:0.23 eAED:0.24 QI:0|1|0.71|1|0.83|1|7|0|545; (*GB) gi|255563941|ref|XP_002522970.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63821907-63828376 transcript_region:SL2.40ch07:63821907..63828376+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00033568g0001.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.25|1|1|4|0|104 NbS00003939g0001.1 protein AED:0.14 eAED:0.18 QI:1327|0.63|0.8|0.95|0.73|0.8|20|481|1080; (*GB) gi|359486635|ref|XP_002279201.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263302 [Vitis vinifera];; (*TAIR) AT3G12590.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:3996473-4003657 REVERSE LENGTH=1184;; (*ITAG) Solyc06g042950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:25336495-25347915 transcript_region:SL2.40ch06:25336495..25347915- functional_description:"Genomic DNA chromosome 3 P1 clone MMF12 (AHRD V1 ***- Q9LHK2_ARATH)"; NbS00003939g0016.1 protein AED:0.39 eAED:0.59 QI:0|0|0|0.66|0|0.33|3|0|192 NbS00006580g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|359481652|ref|XP_003632656.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100854478 [Vitis vinifera];; (*ITAG) Solyc10g081930.1.1 (e_value=5e-108) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:62194247-62194984 transcript_region:SL2.40ch10:62194247..62194984+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006580g0003.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|1|1|4|0|203 NbS00006580g0006.1 protein AED:0.34 eAED:0.44 QI:0|0|0|1|0|0|5|0|276; (*GB) gi|225252|prf||1211235CL (e_value=6e-70) ORF 350;; (*SWP) sp|P12222|YCF1_TOBAC (e_value=7e-67) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01000.1 (e_value=2e-68) | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436 FORWARD LENGTH=343;; (*ITAG) Solyc11g021310.1.1 (e_value=3e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00006580g0005.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0|5|0|162; (*GB) gi|78102606|ref|YP_358745.1| (e_value=2e-24) hypothetical protein NisyCp102 [Nicotiana sylvestris];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=6e-26) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc05g016220.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:15100793-15101179 transcript_region:SL2.40ch05:15100793..15101179- functional_description:"Ycf1 (AHRD V1 ***- D2KLR1_OLEEU); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00011703g0001.1 protein AED:0.27 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|108; (*ITAG) Solyc04g053070.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00052840g0004.1 protein AED:0.18 eAED:0.20 QI:0|0|0|0.8|1|1|5|0|193; (*GB) gi|356526427|ref|XP_003531819.1| (e_value=9e-100) PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max];; (*SWP) sp|P37518|ENGD_BACSU (e_value=1e-62) GTP-dependent nucleic acid-binding protein engD OS=Bacillus subtilis (strain 168) GN=engD PE=3 SV=1;; (*TAIR) AT1G56050.1 (e_value=4e-97) | Symbols: | GTP-binding protein-related | chr1:20963793-20966181 FORWARD LENGTH=421;; (*ITAG) Solyc07g066430.2.1 (e_value=5e-121) genomic_reference:SL2.40ch07 gene_region:65086442-65095484 transcript_region:SL2.40ch07:65086442..65095484+ go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** B0JHK9_MICAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00045752g0006.1 protein AED:0.30 eAED:0.53 QI:0|0.5|0.33|1|0|0.33|3|157|221 NbS00045752g0005.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|1|1|3|0|162; (*ITAG) Solyc01g059760.1.1 (e_value=3e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00057381g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|3|337|378; (*GB) gi|225464481|ref|XP_002268346.1| (e_value=0.0) PREDICTED: signal peptide peptidase-like 3 [Vitis vinifera];; (*SWP) sp|Q9CUS9|SPPL3_MOUSE (e_value=2e-66) Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=2 SV=3;; (*TAIR) AT4G33410.1 (e_value=0.0) | Symbols: ATSPPL1, SPPL1 | SIGNAL PEPTIDE PEPTIDASE-LIKE 1 | chr4:16081640-16083119 FORWARD LENGTH=372;; (*ITAG) Solyc03g025550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7323452-7329167 transcript_region:SL2.40ch03:7323452..7329167- go_terms:GO:0042500 functional_description:"Signal peptide peptidase family protein (AHRD V1 ***- D7M8R6_ARALY); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0042500 NbS00056088g0001.1 protein AED:0.13 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|363807122|ref|NP_001242083.1| (e_value=1e-48) uncharacterized protein LOC100778548 [Glycine max];; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=3e-49) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=9e-34) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc10g084610.1.1 (e_value=5e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63397090-63398872 transcript_region:SL2.40ch10:63397090..63398872+ go_terms:GO:0005840,GO:0000166 functional_description:"60S ribosomal protein L23A (AHRD V1 ***- D7LV29_ARALY); contains Interpro domain(s) IPR012678 Ribosomal protein L23/L15e, core "; GO:0005840,GO:0000166 NbS00056763g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0.5|1|1|1|2|0|106; (*GB) gi|225459824|ref|XP_002285918.1| (e_value=5e-32) PREDICTED: uncharacterized protein LOC100248789 [Vitis vinifera];; (*TAIR) AT1G20460.1 (e_value=1e-31) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD LENGTH=106;; (*ITAG) Solyc12g094510.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63072692-63075656 transcript_region:SL2.40ch12:63072692..63075656+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000148g0002.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0|2|682|385; (*GB) gi|147818878|emb|CAN73778.1| (e_value=3e-178) hypothetical protein VITISV_042179 [Vitis vinifera];; (*SWP) sp|Q9FNK5|FB285_ARATH (e_value=3e-169) F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2 SV=1;; (*TAIR) AT5G46170.1 (e_value=3e-170) | Symbols: | F-box family protein | chr5:18715638-18716825 REVERSE LENGTH=395;; (*ITAG) Solyc08g048430.2.1 (e_value=2e-148) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005362g0005.1 protein AED:0.07 eAED:0.07 QI:526|1|1|1|1|1|3|349|365; (*GB) gi|224069424|ref|XP_002326350.1| (e_value=7e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|O60291|MGRN1_HUMAN (e_value=4e-36) E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2;; (*TAIR) AT3G09770.1 (e_value=1e-121) | Symbols: | RING/U-box superfamily protein | chr3:2996402-2997835 REVERSE LENGTH=388;; (*ITAG) Solyc09g007700.2.1 (e_value=6e-179) genomic_reference:SL2.40ch09 gene_region:1244231-1249357 transcript_region:SL2.40ch09:1244231..1249357- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *-*- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00039230g0010.1 protein AED:0.32 eAED:0.33 QI:0|0.75|0.76|0.92|0.83|1|13|0|400; (*GB) gi|403023|emb|CAA52979.1| (e_value=0.0) phosphate translocator [Nicotiana tabacum];; (*SWP) sp|P29463|TPT_SOLTU (e_value=0.0) Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1;; (*TAIR) AT5G46110.4 (e_value=0.0) | Symbols: APE2, TPT | Glucose-6-phosphate/phosphate translocator-related | chr5:18697606-18700223 FORWARD LENGTH=415;; (*ITAG) Solyc10g008980.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3003367-3007677 transcript_region:SL2.40ch10:3003367..3007677+ go_terms:GO:0008524 functional_description:"Triose phosphate/phosphate translocator (AHRD V1 **** Q9MSB6_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00039230g0011.1 protein AED:0.22 eAED:0.53 QI:0|0|0|1|0.33|0.5|4|0|486 NbS00006701g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|439; (*GB) gi|224092304|ref|XP_002309550.1| (e_value=1e-168) glycosyl transferase [Populus trichocarpa];; (*SWP) sp|Q9SXC4|IRX9H_ARATH (e_value=7e-114) Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=1 SV=2;; (*TAIR) AT1G27600.2 (e_value=5e-115) | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:9604083-9605881 REVERSE LENGTH=394;; (*ITAG) Solyc08g068430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54785683-54787896 transcript_region:SL2.40ch08:54785683..54787896+ go_terms:GO:0016757 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-- B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0016757 NbS00012425g0005.1 protein AED:0.26 eAED:0.28 QI:357|0.81|0.82|1|0.75|0.76|17|0|631; (*GB) gi|225458281|ref|XP_002281422.1| (e_value=0.0) PREDICTED: cytosolic purine 5'-nucleotidase [Vitis vinifera];; (*SWP) sp|Q5RA22|5NTC_PONAB (e_value=5e-58) Cytosolic purine 5'-nucleotidase OS=Pongo abelii GN=NT5C2 PE=2 SV=1;; (*TAIR) AT1G75210.1 (e_value=0.0) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr1:28223990-28228751 FORWARD LENGTH=642;; (*ITAG) Solyc04g080430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62193893-62203160 transcript_region:SL2.40ch04:62193893..62203160+ go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-Nucleotidase (AHRD V1 **** C1FIJ4_9CHLO); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00012425g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.75|1|0.66|0.75|4|170|306; (*GB) gi|85376265|gb|ABC70328.1| (e_value=4e-54) agglutinin isoform [Castanea crenata];; (*SWP) sp|P82859|LECA_CASCR (e_value=3e-55) Agglutinin OS=Castanea crenata PE=1 SV=1;; (*TAIR) AT1G19715.2 (e_value=6e-38) | Symbols: | Mannose-binding lectin superfamily protein | chr1:6816934-6819244 REVERSE LENGTH=571;; (*ITAG) Solyc04g080420.2.1 (e_value=1e-142) genomic_reference:SL2.40ch04 gene_region:62186583-62188782 transcript_region:SL2.40ch04:62186583..62188782- functional_description:"Myrosinase binding protein (AHRD V1 **-- P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00009108g0010.1 protein AED:0.35 eAED:0.35 QI:142|0.5|0.33|1|1|0.66|3|0|414; (*GB) gi|255549002|ref|XP_002515557.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11420.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc08g067030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53144093-53148914 transcript_region:SL2.40ch08:53144093..53148914+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00009108g0009.1 protein AED:0.46 eAED:0.46 QI:0|0.75|0.4|0.8|0.75|0.8|5|0|195; (*GB) gi|15217533|ref|NP_172424.1| (e_value=3e-13) transcription factor PIF3 [Arabidopsis thaliana];; (*SWP) sp|O80536|PIF3_ARATH (e_value=8e-15) Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1;; (*TAIR) AT1G09530.2 (e_value=6e-16) | Symbols: PIF3, POC1, PAP3 | phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524;; (*ITAG) Solyc09g063010.2.1 (e_value=2e-12) genomic_reference:SL2.40ch09 gene_region:56525973-56536072 transcript_region:SL2.40ch09:56525973..56536072- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0010313 NbS00056840g0010.1 protein AED:0.23 eAED:0.27 QI:0|0.73|0.68|1|0.73|0.68|16|310|774; (*GB) gi|297738315|emb|CBI27516.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6F6B5|ARC3_ARATH (e_value=3e-160) Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana GN=ARC3 PE=1 SV=2;; (*TAIR) AT1G75010.1 (e_value=2e-161) | Symbols: ARC3 | GTP binding | chr1:28164994-28169941 REVERSE LENGTH=741;; (*ITAG) Solyc01g007880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2041549-2055134 transcript_region:SL2.40ch01:2041549..2055134- go_terms:GO:0005515 functional_description:"MORN repeat protein (AHRD V1 *--- D4V7H0_BACVU); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; GO:0005515 NbS00056840g0008.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-24) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc03g095400.1.1 (e_value=3e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49944348-49947133 transcript_region:SL2.40ch03:49944348..49947133- functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUQ8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00056840g0009.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|0|0|3|0|81 NbS00059984g0001.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|75; (*GB) gi|357471525|ref|XP_003606047.1| (e_value=1e-32) Ribulose bisphosphate carboxylase large chain [Medicago truncatula];; (*SWP) sp|Q06RC1|RBL_JASNU (e_value=9e-33) Ribulose bisphosphate carboxylase large chain OS=Jasminum nudiflorum GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=2e-29) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=7e-33) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00042063g0006.1 protein AED:0.17 eAED:0.19 QI:1616|0.75|0.6|1|0|0|5|276|226; (*GB) gi|74474915|dbj|BAE44441.1| (e_value=1e-95) dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum];; (*SWP) sp|Q9ZR37|DUS1_ARATH (e_value=3e-57) Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana GN=DSPTP1 PE=1 SV=1;; (*TAIR) AT3G23610.2 (e_value=2e-58) | Symbols: DSPTP1 | dual specificity protein phosphatase 1 | chr3:8478280-8479641 FORWARD LENGTH=201;; (*ITAG) Solyc01g080040.2.1 (e_value=1e-98) genomic_reference:SL2.40ch01 gene_region:71668125-71675546 transcript_region:SL2.40ch01:71668125..71675546+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase (AHRD V1 ***- D7L3D2_ARALY); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00021566g0005.1 protein AED:0.00 eAED:0.00 QI:155|1|1|1|1|1|2|98|67; (*GB) gi|75338884|sp|Q9ZR40.1|U2A2B_NICPL (e_value=3e-27) RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subunit B;; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=8e-29) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT4G36690.2 (e_value=6e-28) | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294591-17297609 REVERSE LENGTH=542;; (*ITAG) Solyc02g062920.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:29438210-29447611 transcript_region:SL2.40ch02:29438210..29447611+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00021566g0006.1 protein AED:0.08 eAED:0.10 QI:0|0.83|0.57|1|1|0.85|7|0|678; (*GB) gi|147858794|emb|CAN78702.1| (e_value=7e-107) hypothetical protein VITISV_034263 [Vitis vinifera];; (*SWP) sp|Q1PFW3|CCSDS_ARATH (e_value=6e-77) Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2;; (*TAIR) AT1G14750.1 (e_value=5e-78) | Symbols: SDS | Cyclin family protein | chr1:5079674-5082423 REVERSE LENGTH=578;; (*ITAG) Solyc04g008070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00021566g0007.1 protein AED:0.02 eAED:0.02 QI:38|0|0|0.5|0|0|2|0|227; (*GB) gi|225462634|ref|XP_002265965.1| (e_value=9e-49) PREDICTED: miraculin [Vitis vinifera];; (*SWP) sp|P13087|MIRA_RICDU (e_value=3e-37) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=2e-38) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g020010.1.1 (e_value=1e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00017401g0003.1 protein AED:0.21 eAED:0.21 QI:120|1|1|1|1|1|2|335|319; (*GB) gi|255585701|ref|XP_002533534.1| (e_value=6e-139) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q9SZ83|Y4967_ARATH (e_value=2e-114) Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1;; (*TAIR) AT4G09670.1 (e_value=1e-115) | Symbols: | Oxidoreductase family protein | chr4:6107382-6109049 REVERSE LENGTH=362;; (*ITAG) Solyc11g011840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4798845-4801208 transcript_region:SL2.40ch11:4798845..4801208+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7LXC3_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491,GO:0055114 NbS00014473g0005.1 protein AED:0.17 eAED:0.18 QI:177|1|0.66|1|1|1|3|0|349; (*GB) gi|10798760|dbj|BAB16432.1| (e_value=0.0) WRKY transcription factor NtEIG-D48 [Nicotiana tabacum];; (*SWP) sp|Q9STX0|WRKY7_ARATH (e_value=3e-88) Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1;; (*TAIR) AT4G24240.1 (e_value=2e-89) | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein 7 | chr4:12571930-12573446 FORWARD LENGTH=353;; (*ITAG) Solyc04g078550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60852591-60854416 transcript_region:SL2.40ch04:60852591..60854416+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- A7UGC9_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00014473g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|267; (*GB) gi|356553974|ref|XP_003545325.1| (e_value=3e-116) PREDICTED: uncharacterized protein At4g06744-like [Glycine max];; (*SWP) sp|Q8W3M4|Y4744_ARATH (e_value=1e-95) Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1;; (*TAIR) AT4G06744.1 (e_value=1e-96) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:4070870-4072084 REVERSE LENGTH=404;; (*ITAG) Solyc04g078560.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60858151-60859305 transcript_region:SL2.40ch04:60858151..60859305+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00052864g0007.1 protein AED:0.18 eAED:0.18 QI:222|0.85|0.87|1|1|1|8|241|435; (*GB) gi|359496462|ref|XP_003635244.1| (e_value=2e-143) PREDICTED: UPF0361 protein C3orf37 homolog [Vitis vinifera];; (*SWP) sp|Q6P7N4|CC037_XENTR (e_value=1e-41) UPF0361 protein C3orf37 homolog OS=Xenopus tropicalis GN=TGas027m07.1 PE=2 SV=1;; (*TAIR) AT2G26470.1 (e_value=4e-118) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink). | chr2:11259316-11262362 REVERSE LENGTH=487; NbS00052864g0008.1 protein AED:0.13 eAED:0.13 QI:246|1|1|1|1|1|5|486|242; (*GB) gi|147845024|emb|CAN82702.1| (e_value=8e-91) hypothetical protein VITISV_026468 [Vitis vinifera];; (*TAIR) AT3G07440.1 (e_value=2e-85) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:2381411-2382902 FORWARD LENGTH=235;; (*ITAG) Solyc09g058990.2.1 (e_value=7e-130) genomic_reference:SL2.40ch09 gene_region:48354604-48362454 transcript_region:SL2.40ch09:48354604..48362454- functional_description:"Unknown Protein (AHRD V1)"; NbS00052864g0003.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|82|220; (*GB) gi|224065445|ref|XP_002301821.1| (e_value=3e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|O78424|YCF19_GUITH (e_value=9e-11) Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3 SV=1;; (*TAIR) AT4G27990.1 (e_value=3e-66) | Symbols: YLMG1-2, ATYLMG1-2 | YGGT family protein | chr4:13923991-13924647 REVERSE LENGTH=218;; (*ITAG) Solyc06g083110.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44952089-44952757 transcript_region:SL2.40ch06:44952089..44952757- go_terms:GO:0016020 functional_description:"Conserved hypothetical membrane protein (AHRD V1 *--- A2C9X4_PROM3); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00014139g0009.1 protein AED:0.04 eAED:0.04 QI:171|0.5|0.33|1|1|1|3|0|243; (*GB) gi|359488652|ref|XP_002271033.2| (e_value=8e-72) PREDICTED: myb-related protein 315-like [Vitis vinifera];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=1e-47) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G14340.1 (e_value=5e-59) | Symbols: AtMYB40, MYB40 | myb domain protein 40 | chr5:4623367-4624779 FORWARD LENGTH=263;; (*ITAG) Solyc02g093740.2.1 (e_value=2e-110) genomic_reference:SL2.40ch02 gene_region:49050918-49052171 transcript_region:SL2.40ch02:49050918..49052171- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00014139g0008.1 protein AED:0.11 eAED:0.21 QI:557|0|0.25|0.5|0.66|0.5|4|0|482; (*GB) gi|225425900|ref|XP_002266763.1| (e_value=5e-67) PREDICTED: F-box protein SKIP14 [Vitis vinifera];; (*SWP) sp|Q9LU91|SKI14_ARATH (e_value=2e-47) F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1;; (*TAIR) AT3G26000.1 (e_value=2e-48) | Symbols: | Ribonuclease inhibitor | chr3:9507042-9508542 REVERSE LENGTH=453;; (*ITAG) Solyc02g093840.2.1 (e_value=2e-173) genomic_reference:SL2.40ch02 gene_region:49121755-49124473 transcript_region:SL2.40ch02:49121755..49124473+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 ***- D7LQX6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00014139g0003.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.33|1|1|3|0|274; (*GB) gi|255539054|ref|XP_002510592.1| (e_value=1e-18) ring finger protein, putative [Ricinus communis];; (*ITAG) Solyc04g081890.1.1 (e_value=3e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63347131-63347535 transcript_region:SL2.40ch04:63347131..63347535+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00036776g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|1|1|2|165|444; (*GB) gi|55824323|gb|AAV66309.1| (e_value=0.0) acyltransferase [Capsicum chinense];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=7e-71) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=1e-62) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc02g081740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40149035-40150445 transcript_region:SL2.40ch02:40149035..40150445- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00014160g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|213; (*GB) gi|62867576|emb|CAI84653.1| (e_value=4e-151) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|O80920|PYL4_ARATH (e_value=3e-82) Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1;; (*TAIR) AT2G38310.1 (e_value=2e-83) | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207;; (*ITAG) Solyc10g085310.1.1 (e_value=9e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63858278-63858919 transcript_region:SL2.40ch10:63858278..63858919+ functional_description:"Abscisic acid receptor PYL4 (AHRD V1 **-- PYL4_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00024018g0014.1 protein AED:0.25 eAED:0.25 QI:0|0.88|1|1|0.66|0.6|10|400|341; (*GB) gi|225465726|ref|XP_002263990.1| (e_value=1e-165) PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera];; (*SWP) sp|Q9H867|MT21D_HUMAN (e_value=6e-24) Methyltransferase-like protein 21D OS=Homo sapiens GN=METTL21D PE=2 SV=2;; (*TAIR) AT1G08125.1 (e_value=4e-133) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:2539748-2542230 REVERSE LENGTH=315;; (*ITAG) Solyc11g068990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50648079-50651193 transcript_region:SL2.40ch11:50648079..50651193+ functional_description:"FAM119A (AHRD V1 **-- C1BWY6_ESOLU); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00024018g0013.1 protein AED:0.12 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|525; (*GB) gi|224104699|ref|XP_002313533.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GW72|FUCO1_ARATH (e_value=0.0) Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2;; (*TAIR) AT2G28100.1 (e_value=0.0) | Symbols: ATFUC1, FUC1 | alpha-L-fucosidase 1 | chr2:11974803-11976489 FORWARD LENGTH=506;; (*ITAG) Solyc11g069010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50659199-50663190 transcript_region:SL2.40ch11:50659199..50663190- go_terms:GO:0005975 functional_description:"Alpha-L-fucosidase 1 (AHRD V1 ***- D7LIF4_ARALY); contains Interpro domain(s) IPR000933 Glycoside hydrolase, family 29 "; GO:0005975 NbS00024018g0015.1 protein AED:0.13 eAED:0.13 QI:167|0.81|0.75|1|0.72|0.75|12|532|514; (*GB) gi|225459806|ref|XP_002285912.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera];; (*SWP) sp|Q4R6F8|TCPB_MACFA (e_value=0.0) T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3;; (*TAIR) AT5G20890.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527;; (*ITAG) Solyc11g069000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50652125-50657452 transcript_region:SL2.40ch11:50652125..50657452- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit beta (AHRD V1 ***- B6T8X5_MAIZE); contains Interpro domain(s) IPR012716 T-complex protein 1, beta subunit "; GO:0044267,GO:0006457 NbS00024018g0009.1 protein AED:0.21 eAED:0.27 QI:0|0|0|1|1|1|3|0|247; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-32) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=3e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00024750g0004.1 protein AED:0.02 eAED:0.02 QI:358|1|0.83|1|0.6|0.66|6|0|205; (*GB) gi|356515639|ref|XP_003526506.1| (e_value=5e-88) PREDICTED: poly(A) polymerase-like [Glycine max];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=2e-41) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT4G32850.1 (e_value=9e-86) | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase | chr4:15850134-15854375 FORWARD LENGTH=741;; (*ITAG) Solyc08g066200.2.1 (e_value=7e-90) genomic_reference:SL2.40ch08 gene_region:51839180-51851039 transcript_region:SL2.40ch08:51839180..51851039+ go_terms:GO:0005515,GO:0004652 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region "; GO:0005515,GO:0004652 NbS00010656g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|2|380|161; (*GB) gi|255570960|ref|XP_002526431.1| (e_value=8e-103) protein with unknown function [Ricinus communis];; (*SWP) sp|O04486|RAA2A_ARATH (e_value=3e-104) Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1;; (*TAIR) AT1G09630.1 (e_value=2e-105) | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c | RAB GTPase 11C | chr1:3118350-3119571 REVERSE LENGTH=217;; (*ITAG) Solyc10g045550.1.1 (e_value=6e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30059252-30065074 transcript_region:SL2.40ch10:30059252..30065074+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00010656g0008.1 protein AED:0.37 eAED:0.37 QI:0|0.83|1|1|1|1|7|357|239; (*GB) gi|4096662|gb|AAD10389.1| (e_value=7e-123) Rab1-like small GTP-binding protein [Petunia x hybrida];; (*SWP) sp|Q9ZRE2|RABD1_ARATH (e_value=2e-107) Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1;; (*TAIR) AT3G11730.1 (e_value=1e-108) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205;; (*ITAG) Solyc01g103370.2.1 (e_value=3e-122) genomic_reference:SL2.40ch01 gene_region:83750652-83755639 transcript_region:SL2.40ch01:83750652..83755639+ go_terms:GO:0007264,GO:0015031,GO:0005525 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525 NbS00004827g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|77; (*ITAG) Solyc00g094550.1.1 (e_value=9e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15541769-15542002 transcript_region:SL2.40ch00:15541769..15542002- functional_description:"Unknown Protein (AHRD V1)"; NbS00004827g0006.1 protein AED:0.04 eAED:0.04 QI:211|0.66|0.75|1|0.33|0.25|4|282|396; (*GB) gi|225439910|ref|XP_002275174.1| (e_value=3e-70) PREDICTED: uncharacterized protein LOC100255082 [Vitis vinifera];; (*TAIR) AT3G09730.2 (e_value=1e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages. | chr3:2984018-2986402 FORWARD LENGTH=405;; (*ITAG) Solyc09g007460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1021194-1025893 transcript_region:SL2.40ch09:1021194..1025893+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030967g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|225440978|ref|XP_002283412.1| (e_value=7e-55) PREDICTED: uncharacterized protein LOC100240905 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=4e-34) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=4e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00034729g0013.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|0.5|0.33|3|0|212; (*GB) gi|82623429|gb|ABB87129.1| (e_value=8e-101) 60S ribosomal protein L7A-like [Solanum tuberosum];; (*SWP) sp|P35685|RL7A_ORYSJ (e_value=4e-96) 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1;; (*TAIR) AT3G62870.1 (e_value=5e-96) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr3:23242862-23244273 REVERSE LENGTH=256;; (*ITAG) Solyc06g064470.2.1 (e_value=4e-104) genomic_reference:SL2.40ch06 gene_region:36536162-36538759 transcript_region:SL2.40ch06:36536162..36538759- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00034729g0012.1 protein AED:0.37 eAED:0.57 QI:0|0|0|0.75|0.33|0.25|4|0|213; (*ITAG) Solyc08g074530.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00013474g0004.1 protein AED:0.05 eAED:0.05 QI:189|1|1|1|0.75|0.6|5|1054|250; (*GB) gi|359478527|ref|XP_002275876.2| (e_value=3e-105) PREDICTED: NAD(P)H-quinone oxidoreductase subunit N [Vitis vinifera];; (*SWP) sp|B8HUU1|NDHN_CYAP4 (e_value=2e-41) NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1;; (*TAIR) AT5G58260.1 (e_value=5e-100) | Symbols: | oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor | chr5:23561075-23561929 REVERSE LENGTH=209;; (*ITAG) Solyc09g083150.2.1 (e_value=2e-148) genomic_reference:SL2.40ch09 gene_region:64218173-64221488 transcript_region:SL2.40ch09:64218173..64221488+ functional_description:"NAD(P)H-quinone oxidoreductase subunit N (AHRD V1 *-*- D4ZT43_SPIPL)"; NbS00055553g0002.1 protein AED:0.00 eAED:0.00 QI:343|1|1|1|0|0|3|49|48 NbS00055553g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0.5|0.66|3|0|91; (*GB) gi|224124186|ref|XP_002330126.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g115950.2.1 (e_value=1e-36) genomic_reference:SL2.40ch03 gene_region:59579725-59580473 transcript_region:SL2.40ch03:59579725..59580473+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058609g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|296087306|emb|CBI33680.3| (e_value=5e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G49880.1 (e_value=5e-63) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=1e-88) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00058609g0004.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.5|1|1|2|0|91 NbS00058609g0006.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|357473125|ref|XP_003606847.1| (e_value=5e-43) Diphthamide biosynthesis protein [Medicago truncatula];; (*SWP) sp|Q6CMG4|DPH3_KLULA (e_value=1e-21) Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1;; (*TAIR) AT2G15910.1 (e_value=5e-42) | Symbols: | CSL zinc finger domain-containing protein | chr2:6932917-6935333 REVERSE LENGTH=367;; (*ITAG) Solyc01g109070.2.1 (e_value=9e-47) genomic_reference:SL2.40ch01 gene_region:87876278-87876893 transcript_region:SL2.40ch01:87876278..87876893+ go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 3 (AHRD V1 ***- B6SIS6_MAIZE); contains Interpro domain(s) IPR007872 Zinc finger, DPH-type "; GO:0005515 NbS00029347g0009.1 protein AED:0.07 eAED:0.11 QI:365|1|0.75|1|1|1|4|0|764; (*GB) gi|225458045|ref|XP_002277913.1| (e_value=8e-38) PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|Q56XU4|C3H6_ARATH (e_value=4e-33) Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1;; (*TAIR) AT1G19860.1 (e_value=3e-34) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413;; (*ITAG) Solyc02g084200.1.1 (e_value=2e-130) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41952210-41955960 transcript_region:SL2.40ch02:41952210..41955960- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 6 (AHRD V1 *-*- C3H6_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00029347g0013.1 protein AED:0.29 eAED:0.29 QI:179|0.6|0.66|1|0.8|0.66|6|0|87; (*GB) gi|223975955|gb|ACN32165.1| (e_value=4e-25) unknown [Zea mays];; (*SWP) sp|P62323|SMD3_XENLA (e_value=3e-15) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1;; (*TAIR) AT1G20580.1 (e_value=1e-25) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128979-7130371 FORWARD LENGTH=131;; (*ITAG) Solyc02g084020.2.1 (e_value=5e-30) genomic_reference:SL2.40ch02 gene_region:41817943-41822321 transcript_region:SL2.40ch02:41817943..41822321- go_terms:GO:0003729,GO:0019899 functional_description:"Small nuclear ribonucleoprotein Sm D3 (AHRD V1 ***- B6UDW2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0003729,GO:0019899 NbS00029347g0008.1 protein AED:0.32 eAED:0.32 QI:133|1|0.75|1|1|1|4|0|250; (*GB) gi|344227187|gb|AEN03273.1| (e_value=3e-150) methionine sulfoxide reductase A5 [Solanum lycopersicum];; (*SWP) sp|Q9SL43|MSRA5_ARATH (e_value=9e-119) Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1;; (*TAIR) AT2G18030.1 (e_value=7e-120) | Symbols: | Peptide methionine sulfoxide reductase family protein | chr2:7840207-7841496 FORWARD LENGTH=254;; (*ITAG) Solyc02g084030.2.1 (e_value=6e-153) genomic_reference:SL2.40ch02 gene_region:41824425-41829560 transcript_region:SL2.40ch02:41824425..41829560+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 *-** C7NTZ7_HALUD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00020612g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|118137433|pdb|2CJJ|A (e_value=6e-22) Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus;; (*TAIR) AT4G39250.1 (e_value=1e-22) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc04g080500.2.1 (e_value=2e-25) genomic_reference:SL2.40ch04 gene_region:62254318-62254971 transcript_region:SL2.40ch04:62254318..62254971- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00035489g0004.1 protein AED:0.18 eAED:0.18 QI:213|1|0.33|1|0|0.33|3|0|127; (*GB) gi|147809591|emb|CAN71206.1| (e_value=3e-25) hypothetical protein VITISV_031603 [Vitis vinifera];; (*ITAG) Solyc03g026000.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:7792138-7794183 transcript_region:SL2.40ch03:7792138..7794183- functional_description:"Unknown Protein (AHRD V1)"; NbS00035489g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|147865643|emb|CAN83669.1| (e_value=1e-165) hypothetical protein VITISV_027696 [Vitis vinifera];; (*SWP) sp|Q8C2L6|T161B_MOUSE (e_value=5e-11) Transmembrane protein 161B OS=Mus musculus GN=Tmem161b PE=2 SV=1;; (*TAIR) AT5G52180.1 (e_value=2e-145) | Symbols: | LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:21200165-21201541 REVERSE LENGTH=458;; (*ITAG) Solyc03g026010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7800796-7802172 transcript_region:SL2.40ch03:7800796..7802172+ functional_description:"Transmembrane protein 161B (AHRD V1 *-*- T161B_MOUSE)"; NbS00004005g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.71|0.62|0.87|0.42|0.37|8|0|203; (*GB) gi|147795757|emb|CAN76530.1| (e_value=6e-107) hypothetical protein VITISV_012682 [Vitis vinifera];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=2e-66) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G14305.1 (e_value=1e-99) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:8235335-8236605 REVERSE LENGTH=185;; (*ITAG) Solyc06g053550.2.1 (e_value=6e-106) genomic_reference:SL2.40ch06 gene_region:32852442-32855400 transcript_region:SL2.40ch06:32852442..32855400- go_terms:GO:0005515 functional_description:"Peroxisomal membrane protein (AHRD V1 **-- Q1HQV8_AEDAE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0005515 NbS00004005g0004.1 protein AED:0.19 eAED:1.00 QI:22|0|0|1|0|0|2|653|24 NbS00021275g0005.1 protein AED:0.12 eAED:0.14 QI:0|0.33|0.25|1|1|0.5|4|0|277; (*GB) gi|357468831|ref|XP_003604700.1| (e_value=4e-94) Ribosomal protein S8 [Medicago truncatula];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=3e-71) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=3e-66) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc07g065170.2.1 (e_value=1e-77) genomic_reference:SL2.40ch07 gene_region:64272755-64275084 transcript_region:SL2.40ch07:64272755..64275084- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- B4FGG1_MAIZE); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00008217g0018.1 protein AED:0.25 eAED:0.25 QI:204|1|1|1|0.88|1|10|524|461; (*GB) gi|306029974|gb|ADM83430.1| (e_value=0.0) 1-hydroxy-2-methyl-butenyl 4-diphosphate reductase [Nicotiana benthamiana];; (*SWP) sp|Q94B35|ISPH_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1;; (*TAIR) AT4G34350.1 (e_value=0.0) | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | chr4:16428681-16431038 REVERSE LENGTH=466;; (*ITAG) Solyc01g109300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88049244-88054027 transcript_region:SL2.40ch01:88049244..88054027+ go_terms:GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-enyl diphosphate reductase (AHRD V1 ***- A2TGW4_9LAMI); contains Interpro domain(s) IPR003451 LytB protein "; GO:0055114 NbS00008217g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|147851991|emb|CAN79067.1| (e_value=1e-75) hypothetical protein VITISV_043720 [Vitis vinifera];; (*SWP) sp|Q09463|RNF5_CAEEL (e_value=3e-27) RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1;; (*TAIR) AT1G19310.1 (e_value=2e-66) | Symbols: | RING/U-box superfamily protein | chr1:6676424-6677104 REVERSE LENGTH=226;; (*ITAG) Solyc01g109340.2.1 (e_value=8e-122) genomic_reference:SL2.40ch01 gene_region:88071379-88072418 transcript_region:SL2.40ch01:88071379..88072418- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008217g0017.1 protein AED:0.10 eAED:0.10 QI:0|1|0.87|1|1|1|8|238|471; (*GB) gi|356538823|ref|XP_003537900.1| (e_value=6e-141) PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9XIA4|CCS1_ARATH (e_value=7e-128) Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1;; (*TAIR) AT1G49380.1 (e_value=5e-129) | Symbols: | cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547;; (*ITAG) Solyc10g051200.1.1 (e_value=6e-162) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47193947-47197659 transcript_region:SL2.40ch10:47193947..47197659- functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7KE35_ARALY); contains Interpro domain(s) IPR007816 ResB-like "; NbS00008217g0020.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.5|1|0.6|0.5|6|77|434; (*GB) gi|255556131|ref|XP_002519100.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-50) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=7e-117) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc01g109320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88057676-88060117 transcript_region:SL2.40ch01:88057676..88060117- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00008217g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.4|1|1|5|0|270; (*GB) gi|57014003|ref|YP_173474.1| (e_value=8e-56) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=6e-30) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00008217g0105.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|103 NbS00008217g0118.1 protein AED:0.14 eAED:0.14 QI:0|0.85|0.87|1|0.85|0.87|8|0|330 NbS00008217g0103.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|3|119|366 NbS00008217g0117.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|1|1|3|0|389 NbS00008217g0104.1 protein AED:0.19 eAED:0.19 QI:601|1|0.5|1|0|0.5|2|0|370 NbS00008217g0116.1 protein AED:0.24 eAED:0.24 QI:221|1|1|1|0.81|0.78|23|315|759 NbS00033957g0010.1 protein AED:0.32 eAED:0.33 QI:12|0.66|0.63|0.89|0.72|0.68|19|0|1194; (*GB) gi|297740613|emb|CBI30795.3| (e_value=4e-158) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=1e-116) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=1e-117) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35489139-35493417 transcript_region:SL2.40ch02:35489139..35493417- functional_description:"Bromodomain-containing protein (AHRD V1 *--- D3B540_POLPA); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00033957g0004.1 protein AED:0.49 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|224061381|ref|XP_002300451.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g071430.2.1 (e_value=3e-28) genomic_reference:SL2.40ch02 gene_region:35460364-35462257 transcript_region:SL2.40ch02:35460364..35462257- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_ACTDE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00015392g0110.1 protein AED:0.29 eAED:0.29 QI:151|1|0.5|1|0|0.5|2|0|458 NbS00015392g0102.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|91 NbS00015392g0105.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|98 NbS00015392g0112.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0|2|0|122 NbS00015392g0111.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|101 NbS00019161g0008.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|184; (*GB) gi|113205247|gb|AAT39965.2| (e_value=5e-24) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00054875g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|1|1|4|0|151; (*GB) gi|357485613|ref|XP_003613094.1| (e_value=3e-49) Ovarian cancer-associated gene 2 protein-like protein [Medicago truncatula];; (*TAIR) AT4G24380.2 (e_value=4e-41) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171;; (*ITAG) Solyc11g010420.1.1 (e_value=6e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3485517-3488338 transcript_region:SL2.40ch11:3485517..3488338+ go_terms:GO:0017171 functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; GO:0017171 NbS00049295g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=0.0) malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZWR8|ANTA_GENTR (e_value=3e-123) Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT1G03940.1 (e_value=1e-76) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:1009542-1010951 REVERSE LENGTH=469;; (*ITAG) Solyc10g008680.1.1 (e_value=1e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00049295g0003.1 protein AED:0.14 eAED:0.24 QI:0|0|0|1|0|0|5|0|304; (*GB) gi|7385017|gb|AAF61647.1|AF190634_1 (e_value=3e-60) UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|O22822|U74F2_ARATH (e_value=1e-19) UDP-glycosyltransferase 74F2 OS=Arabidopsis thaliana GN=UGT74F2 PE=1 SV=1;; (*TAIR) AT2G43820.1 (e_value=7e-21) | Symbols: GT, UGT74F2, ATSAGT1, SGT1, SAGT1 | UDP-glucosyltransferase 74F2 | chr2:18152279-18153715 FORWARD LENGTH=449;; (*ITAG) Solyc08g006330.2.1 (e_value=9e-58) genomic_reference:SL2.40ch08 gene_region:990397-992206 transcript_region:SL2.40ch08:990397..992206- go_terms:GO:0080002 functional_description:"UDP-glucose salicylic acid glucosyltransferase (AHRD V1 **** Q9M6E7_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00044837g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.9|0.81|1|0.9|0.81|11|0|871; (*GB) gi|225436347|ref|XP_002270926.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261914 [Vitis vinifera];; (*TAIR) AT5G22640.1 (e_value=0.0) | Symbols: emb1211 | MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein | chr5:7529423-7533641 FORWARD LENGTH=871;; (*ITAG) Solyc11g066870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49750064-49758736 transcript_region:SL2.40ch11:49750064..49758736- functional_description:"Genomic DNA chromosome 5 P1 clone MDJ22 (AHRD V1 **-- Q9FNJ7_ARATH); contains Interpro domain(s) IPR003409 MORN motif "; NbC26171019g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|122 NbS00043913g0001.1 protein AED:0.36 eAED:0.36 QI:170|1|0.66|1|1|1|3|0|250; (*GB) gi|100801744|emb|CAK24966.1| (e_value=7e-166) chlorophyll a/b binding protein [Solanum tuberosum];; (*SWP) sp|P27521|CA4_ARATH (e_value=2e-154) Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1;; (*TAIR) AT3G47470.1 (e_value=1e-155) | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251;; (*ITAG) Solyc06g069730.2.1 (e_value=9e-173) genomic_reference:SL2.40ch06 gene_region:39822568-39823763 transcript_region:SL2.40ch06:39822568..39823763+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 ***- CA4_ARATH); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00043913g0003.1 protein AED:0.25 eAED:0.32 QI:0|0|0|1|1|1|2|0|100; (*GB) gi|224141003|ref|XP_002323865.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g069740.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39824282-39824839 transcript_region:SL2.40ch06:39824282..39824839- go_terms:GO:0005515,GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515,GO:0005509 NbS00057313g0005.1 protein AED:0.06 eAED:0.09 QI:0|0.88|0.72|1|0.70|0.77|18|0|614; (*GB) gi|359483492|ref|XP_002273615.2| (e_value=0.0) PREDICTED: glycogen phosphorylase 1-like [Vitis vinifera];; (*SWP) sp|Q00766|PHS1_DICDI (e_value=0.0) Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3;; (*TAIR) AT3G46970.1 (e_value=0.0) | Symbols: ATPHS2, PHS2 | alpha-glucan phosphorylase 2 | chr3:17301625-17306111 REVERSE LENGTH=841;; (*ITAG) Solyc02g077680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37144954-37157686 transcript_region:SL2.40ch02:37144954..37157686+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9H2Q8_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00005980g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.4|0.33|1|1|1|6|0|548; (*GB) gi|350537917|ref|NP_001234829.1| (e_value=0.0) ascorbate oxidase precursor [Solanum lycopersicum];; (*SWP) sp|P24792|ASO_CUCMA (e_value=2e-179) L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2;; (*TAIR) AT4G39830.1 (e_value=0.0) | Symbols: | Cupredoxin superfamily protein | chr4:18479103-18481184 FORWARD LENGTH=582;; (*ITAG) Solyc04g054690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52198899-52201343 transcript_region:SL2.40ch04:52198899..52201343- go_terms:GO:0005576,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants "; GO:0005576,GO:0055114 NbS00005980g0106.1 protein AED:0.06 eAED:0.06 QI:316|1|1|1|0.4|0.33|6|668|414 NbS00005980g0223.1 protein AED:0.05 eAED:0.05 QI:157|1|1|1|0.9|0.81|11|245|479 NbS00005980g0229.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.57|1|0.5|0.57|7|0|343 NbS00005980g0204.1 protein AED:0.20 eAED:0.20 QI:0|0|0.33|1|1|1|3|0|268 NbS00005980g0225.1 protein AED:0.13 eAED:0.13 QI:107|0.9|1|1|1|1|11|344|674 NbS00012136g0003.1 protein AED:0.20 eAED:0.20 QI:210|1|1|1|1|1|9|248|627; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=6e-69) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41894196-41899465 transcript_region:SL2.40ch06:41894196..41899465+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00032376g0001.1 protein AED:0.00 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|224054146|ref|XP_002298114.1| (e_value=1e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G52720.1 (e_value=2e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19641007-19641360 FORWARD LENGTH=117;; (*ITAG) Solyc03g114100.1.1 (e_value=6e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:58188247-58188624 transcript_region:SL2.40ch03:58188247..58188624+ functional_description:"AT3g15630/MSJ11_3 (AHRD V1 ***- Q9LW16_ARATH)"; NbS00038169g0007.1 protein AED:0.16 eAED:0.16 QI:317|0.75|1|1|0.75|0.6|5|413|689; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=3e-72) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*TAIR) AT2G15530.3 (e_value=3e-50) | Symbols: | RING/U-box superfamily protein | chr2:6774150-6777068 FORWARD LENGTH=704;; (*ITAG) Solyc10g050170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:43547064-43551461 transcript_region:SL2.40ch10:43547064..43551461- go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00038169g0005.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|225460490|ref|XP_002270278.1| (e_value=6e-21) PREDICTED: uncharacterized protein LOC100247803 [Vitis vinifera];; (*ITAG) Solyc10g050200.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:43593514-43594149 transcript_region:SL2.40ch10:43593514..43594149+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00038169g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|4|223|411; (*GB) gi|67906424|gb|AAY82589.1| (e_value=0.0) bZIP [Nicotiana tabacum];; (*SWP) sp|Q9M7Q3|AI5L6_ARATH (e_value=7e-75) ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1;; (*TAIR) AT4G34000.2 (e_value=5e-76) | Symbols: ABF3, DPBF5 | abscisic acid responsive elements-binding factor 3 | chr4:16296008-16297971 FORWARD LENGTH=454;; (*ITAG) Solyc10g050210.1.1 (e_value=3e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:43594760-43596753 transcript_region:SL2.40ch10:43594760..43596753- go_terms:GO:0005515,GO:0016563,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0016563,GO:0003677 NbC25957072g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|143 NbS00013801g0009.1 protein AED:0.13 eAED:0.16 QI:0|0.64|0.6|1|0.57|0.66|15|0|835; (*GB) gi|22331647|ref|NP_190357.2| (e_value=0.0) ABC transporter A family member 2 [Arabidopsis thaliana];; (*SWP) sp|Q84K47|AB2A_ARATH (e_value=0.0) ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1;; (*TAIR) AT3G47730.1 (e_value=0.0) | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassette A2 | chr3:17594342-17598828 REVERSE LENGTH=983;; (*ITAG) Solyc06g070960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39966763-39972188 transcript_region:SL2.40ch06:39966763..39972188+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00013801g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.73|0.68|0.93|0.66|0.68|16|0|825; (*GB) gi|297734006|emb|CBI15253.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STT5|AB7A_ARATH (e_value=0.0) ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2;; (*TAIR) AT3G47780.1 (e_value=0.0) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935;; (*ITAG) Solyc06g070950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39956611-39964617 transcript_region:SL2.40ch06:39956611..39964617- go_terms:GO:0042626 functional_description:"ATP-binding cassette (ABC) transporter 17 (AHRD V1 ***- Q4H493_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00010433g0016.1 protein AED:0.04 eAED:0.04 QI:29|1|1|1|1|1|3|267|257; (*GB) gi|40217876|gb|AAR82849.1| (e_value=9e-173) expansin-1 [Petunia x hybrida];; (*SWP) sp|O48818|EXPA4_ARATH (e_value=1e-155) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=1e-156) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g076220.2.1 (e_value=8e-171) genomic_reference:SL2.40ch06 gene_region:43750501-43752531 transcript_region:SL2.40ch06:43750501..43752531- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00010433g0015.1 protein AED:0.18 eAED:0.18 QI:6|0.66|0.71|1|0.66|0.71|7|275|593; (*GB) gi|297746065|emb|CBI16121.3| (e_value=2e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G59390.1 (e_value=2e-74) | Symbols: | XH/XS domain-containing protein | chr5:23954934-23957151 FORWARD LENGTH=561;; (*ITAG) Solyc06g076210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43745444-43749319 transcript_region:SL2.40ch06:43745444..43749319+ functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E5_ZEAMP); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00015016g0005.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.2|0.6|0.5|0.2|5|15|161; (*GB) gi|255539953|ref|XP_002511041.1| (e_value=2e-64) polyadenylate-binding protein, putative [Ricinus communis];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=8e-32) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G65260.1 (e_value=5e-61) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc03g094080.2.1 (e_value=1e-72) genomic_reference:SL2.40ch03 gene_region:49237600-49251473 transcript_region:SL2.40ch03:49237600..49251473- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00010824g0011.1 protein AED:0.11 eAED:0.13 QI:43|0.66|0.57|1|0.16|0.14|7|110|248; (*GB) gi|361064616|gb|AEW07379.1| (e_value=1e-86) dwarf 27 [Medicago truncatula];; (*TAIR) AT1G03055.1 (e_value=2e-58) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:710102-711763 REVERSE LENGTH=264;; (*ITAG) Solyc09g065750.2.1 (e_value=2e-125) genomic_reference:SL2.40ch09 gene_region:59623251-59628604 transcript_region:SL2.40ch09:59623251..59628604- functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)"; NbS00010824g0007.1 protein AED:0.34 eAED:0.34 QI:124|1|1|1|0.5|0.33|3|417|140; (*GB) gi|225437178|ref|XP_002281266.1| (e_value=3e-73) PREDICTED: histone H2A variant 1 [Vitis vinifera];; (*SWP) sp|Q84MP7|H2AV3_ORYSJ (e_value=9e-73) Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1;; (*TAIR) AT2G38810.2 (e_value=4e-72) | Symbols: HTA8 | histone H2A 8 | chr2:16219444-16220679 REVERSE LENGTH=136;; (*ITAG) Solyc06g084090.2.1 (e_value=1e-73) genomic_reference:SL2.40ch06 gene_region:45626067-45629099 transcript_region:SL2.40ch06:45626067..45629099+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 *-*- C5XX54_SORBI); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00010824g0012.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0.6|1|0.5|0.8|5|0|469; (*GB) gi|255559879|ref|XP_002520958.1| (e_value=0.0) ammonium transporter, putative [Ricinus communis];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=1e-170) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=6e-154) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc09g065740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59619493-59622604 transcript_region:SL2.40ch09:59619493..59622604+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00029917g0006.1 protein AED:0.19 eAED:0.19 QI:503|0.91|0.84|1|0.83|0.84|13|0|637; (*GB) gi|225426379|ref|XP_002271860.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform 2 [Vitis vinifera];; (*SWP) sp|C0LGH8|Y1634_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1;; (*TAIR) AT1G63430.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23522896-23526451 FORWARD LENGTH=664;; (*ITAG) Solyc12g056300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47599490-47604967 transcript_region:SL2.40ch12:47599490..47604967- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00029917g0003.1 protein AED:0.23 eAED:0.23 QI:139|1|1|1|0.75|0.8|5|331|130; (*GB) gi|351727941|ref|NP_001236666.1| (e_value=7e-85) uncharacterized protein LOC100305531 [Glycine max];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=2e-77) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=2e-78) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=4e-79) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00005905g0001.1 protein AED:0.01 eAED:0.01 QI:253|0|0.66|1|0|1|3|298|108; (*GB) gi|255574501|ref|XP_002528162.1| (e_value=2e-51) glycine cleavage system h protein, putative [Ricinus communis];; (*SWP) sp|P46485|GCSH_FLATR (e_value=7e-45) Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1;; (*TAIR) AT2G35120.1 (e_value=3e-49) | Symbols: | Single hybrid motif superfamily protein | chr2:14805913-14807274 REVERSE LENGTH=156;; (*ITAG) Solyc02g068740.2.1 (e_value=3e-48) genomic_reference:SL2.40ch02 gene_region:33249523-33253471 transcript_region:SL2.40ch02:33249523..33253471- go_terms:GO:0019464,GO:0005960 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 ***- B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0019464,GO:0005960 NbS00033011g0008.1 protein AED:0.20 eAED:0.20 QI:60|0.33|0.5|1|0.33|0.25|4|426|469; (*GB) gi|14211757|gb|AAK57505.1| (e_value=0.0) extracellular invertase Nin88 [Nicotiana tabacum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=1e-179) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.1 (e_value=3e-146) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19509273 REVERSE LENGTH=590;; (*ITAG) Solyc09g010090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00033011g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|297740148|emb|CBI30330.3| (e_value=8e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G15040.1 (e_value=1e-22) | Symbols: | Protein of unknown function, DUF584 | chr3:5065445-5066176 REVERSE LENGTH=243;; (*ITAG) Solyc09g010140.1.1 (e_value=3e-97) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3516951-3517673 transcript_region:SL2.40ch09:3516951..3517673+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00024262g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|0.85|1|1|1|7|0|694; (*GB) gi|3044212|gb|AAC13497.1| (e_value=0.0) acyl-CoA oxidase [Arabidopsis thaliana];; (*SWP) sp|O65201|ACOX2_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana GN=ACX2 PE=1 SV=2;; (*TAIR) AT5G65110.1 (e_value=0.0) | Symbols: ACX2, ATACX2 | acyl-CoA oxidase 2 | chr5:26009821-26012482 REVERSE LENGTH=692;; (*ITAG) Solyc04g054890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52506991-52511567 transcript_region:SL2.40ch04:52506991..52511567- go_terms:GO:0016402 functional_description:"Acyl-CoA oxidase (AHRD V1 **** D7MT79_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016402 NbS00024262g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.33|1|0.6|0.66|6|0|723; (*GB) gi|359497584|ref|XP_002269256.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245130, partial [Vitis vinifera];; (*TAIR) AT4G39790.1 (e_value=6e-168) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:18462316-18464584 REVERSE LENGTH=657;; (*ITAG) Solyc04g054880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52498767-52506226 transcript_region:SL2.40ch04:52498767..52506226+ functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00024262g0016.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|104 NbS00011990g0009.1 protein AED:0.27 eAED:0.28 QI:296|0.94|0.89|1|0.88|0.84|19|0|584; (*GB) gi|224072427|ref|XP_002303728.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=0.0) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT1G30820.1 (e_value=0.0) | Symbols: | CTP synthase family protein | chr1:10945251-10948825 REVERSE LENGTH=600;; (*ITAG) Solyc02g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40468742-40474353 transcript_region:SL2.40ch02:40468742..40474353+ go_terms:GO:0003883,GO:0042802 functional_description:"CTP synthase (AHRD V1 **** B6U7R1_MAIZE); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0003883,GO:0042802 NbS00011990g0008.1 protein AED:0.43 eAED:0.45 QI:0|0|0.5|1|1|0.5|2|149|151; (*GB) gi|329025160|gb|AEB71563.1| (e_value=5e-57) glutaredoxin [Solanum chacoense];; (*SWP) sp|Q851Y7|GRXS7_ORYSJ (e_value=1e-50) Monothiol glutaredoxin-S7, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS7 PE=2 SV=1;; (*TAIR) AT3G54900.1 (e_value=1e-51) | Symbols: CXIP1, ATGRXCP | CAX interacting protein 1 | chr3:20341850-20342371 REVERSE LENGTH=173;; (*ITAG) Solyc02g082200.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:40474471-40478745 transcript_region:SL2.40ch02:40474471..40478745+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- A9LC71_PTEVI); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0045454 NbS00028612g0008.1 protein AED:0.17 eAED:0.18 QI:0|1|0|1|1|1|2|0|235; (*GB) gi|297736022|emb|CBI24060.3| (e_value=7e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G20700.1 (e_value=9e-24) | Symbols: | Protein of unknown function (DUF581) | chr5:7006178-7007003 REVERSE LENGTH=248;; (*ITAG) Solyc07g017220.2.1 (e_value=7e-110) genomic_reference:SL2.40ch07 gene_region:6515317-6518394 transcript_region:SL2.40ch07:6515317..6518394- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00023400g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|224054994|ref|XP_002298398.1| (e_value=4e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|P31336|PST2_GOSHI (e_value=6e-15) Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1;; (*TAIR) AT1G51400.1 (e_value=1e-16) | Symbols: | Photosystem II 5 kD protein | chr1:19052172-19052492 REVERSE LENGTH=106;; (*ITAG) Solyc12g099650.1.1 (e_value=8e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65050922-65051263 transcript_region:SL2.40ch12:65050922..65051263+ functional_description:"Photosystem II 5 kDa protein, chloroplastic (AHRD V1 ***- PST2_GOSHI)"; NbS00023400g0022.1 protein AED:0.29 eAED:0.32 QI:13|0.4|0.16|1|0.2|0.33|6|186|210; (*GB) gi|359473203|ref|XP_002265544.2| (e_value=3e-56) PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera];; (*TAIR) AT2G18770.1 (e_value=7e-56) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:8134984-8136360 FORWARD LENGTH=260;; (*ITAG) Solyc11g043150.1.1 (e_value=7e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34946955-34953284 transcript_region:SL2.40ch11:34946955..34953284- go_terms:GO:0005525 functional_description:"Signal recognition particle receptor beta subunit-like protein (AHRD V1 **-- Q0WRZ7_ARATH); contains Interpro domain(s) IPR019009 Signal recognition particle receptor, beta subunit "; GO:0005525 NbS00023400g0023.1 protein AED:0.36 eAED:0.38 QI:0|0.62|0.47|0.88|0.5|0.64|17|0|557; (*GB) gi|359478816|ref|XP_002283762.2| (e_value=5e-177) PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera];; (*SWP) sp|P14314|GLU2B_HUMAN (e_value=2e-33) Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2;; (*TAIR) AT5G56360.1 (e_value=1e-152) | Symbols: PSL4 | calmodulin-binding protein | chr5:22823586-22827950 REVERSE LENGTH=647;; (*ITAG) Solyc12g099660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65054811-65063399 transcript_region:SL2.40ch12:65054811..65063399+ go_terms:GO:0005515 functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B6K4H4_SCHJY); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0005515 NbS00023400g0026.1 protein AED:0.10 eAED:0.14 QI:0|0.33|0|1|0.33|0|4|0|661; (*GB) gi|147861778|emb|CAN78916.1| (e_value=8e-121) hypothetical protein VITISV_032223 [Vitis vinifera];; (*SWP) sp|O22267|CKI1_ARATH (e_value=5e-90) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=4e-91) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00023400g0019.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|0.66|3|185|196; (*GB) gi|75334880|sp|Q9LEB4.1|RBP45_NICPL (e_value=2e-13) RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protein RBP45; AltName: Full=RNA-binding protein 45; Short=NplRBP45;; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=6e-15) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G47500.1 (e_value=2e-12) | Symbols: ATRBP47C', RBP47C' | RNA-binding protein 47C' | chr1:17432682-17434805 FORWARD LENGTH=434;; (*ITAG) Solyc07g064510.2.1 (e_value=7e-15) genomic_reference:SL2.40ch07 gene_region:63845123-63849000 transcript_region:SL2.40ch07:63845123..63849000- go_terms:GO:0042802 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-* PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00023400g0021.1 protein AED:0.54 eAED:0.60 QI:0|0|0|0.5|1|0.5|2|0|145; (*GB) gi|224130996|ref|XP_002320976.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|O22267|CKI1_ARATH (e_value=6e-20) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=4e-21) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=8e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00002984g0006.1 protein AED:0.37 eAED:0.38 QI:0|0.5|0.4|1|0.75|0.6|5|0|243; (*GB) gi|359806693|ref|NP_001241545.1| (e_value=7e-62) uncharacterized protein LOC100791789 [Glycine max];; (*TAIR) AT3G60300.1 (e_value=6e-54) | Symbols: | RWD domain-containing protein | chr3:22285371-22287382 FORWARD LENGTH=366;; (*ITAG) Solyc01g090220.2.1 (e_value=4e-112) genomic_reference:SL2.40ch01 gene_region:75620253-75633053 transcript_region:SL2.40ch01:75620253..75633053- go_terms:GO:0006629,GO:0008270 functional_description:"Lipase (Fragment) (AHRD V1 *--- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629,GO:0008270 NbS00002440g0008.1 protein AED:0.36 eAED:0.37 QI:0|0.7|0.81|1|1|1|11|261|443; (*GB) gi|359485049|ref|XP_002271984.2| (e_value=0.0) PREDICTED: diacylglycerol kinase A-like [Vitis vinifera];; (*SWP) sp|O75912|DGKI_HUMAN (e_value=4e-31) Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1;; (*TAIR) AT4G30340.1 (e_value=0.0) | Symbols: ATDGK7, DGK7 | diacylglycerol kinase 7 | chr4:14838465-14840941 REVERSE LENGTH=492;; (*ITAG) Solyc07g006580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1387329-1406463 transcript_region:SL2.40ch07:1387329..1406463+ go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 7 (AHRD V1 **** B0KYU1_ARATH); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0004143 NbS00002440g0004.1 protein AED:0.32 eAED:0.45 QI:0|0|0|1|1|1|2|0|93; (*GB) gi|388509476|gb|AFK42804.1| (e_value=4e-22) unknown [Lotus japonicus];; (*TAIR) AT5G35732.1 (e_value=6e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:13897961-13898263 FORWARD LENGTH=100;; (*ITAG) Solyc07g006590.1.1 (e_value=3e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1425483-1425749 transcript_region:SL2.40ch07:1425483..1425749+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004220g0012.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|0.33|3|0|456; (*GB) gi|125585909|gb|EAZ26573.1| (e_value=4e-167) hypothetical protein OsJ_10469 [Oryza sativa Japonica Group];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=5e-35) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT3G08947.1 (e_value=3e-99) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=1e-129) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00004220g0013.1 protein AED:0.24 eAED:0.25 QI:0|1|0.33|1|1|1|3|0|238; (*GB) gi|224093568|ref|XP_002309937.1| (e_value=4e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VY52|PPD2_ARATH (e_value=6e-68) PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1;; (*TAIR) AT2G28605.1 (e_value=5e-69) | Symbols: | Photosystem II reaction center PsbP family protein | chr2:12254911-12255689 FORWARD LENGTH=232;; (*ITAG) Solyc04g009420.2.1 (e_value=2e-118) genomic_reference:SL2.40ch04 gene_region:2840496-2842762 transcript_region:SL2.40ch04:2840496..2842762- go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- Q11A16_TRIEI); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00004220g0015.1 protein AED:0.15 eAED:0.15 QI:128|0.90|0.91|1|0.90|0.83|12|664|382; (*GB) gi|255550570|ref|XP_002516335.1| (e_value=2e-178) chromatin regulatory protein sir2, putative [Ricinus communis];; (*SWP) sp|Q94AQ6|SIR4_ARATH (e_value=2e-177) NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1;; (*TAIR) AT5G09230.5 (e_value=8e-179) | Symbols: SRT2 | sirtuin 2 | chr5:2871839-2873613 FORWARD LENGTH=354;; (*ITAG) Solyc04g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2843670-2851326 transcript_region:SL2.40ch04:2843670..2851326+ go_terms:GO:0003700 functional_description:"NAD-dependent deacetylase (AHRD V1 ***- D4SZS6_9XANT); contains Interpro domain(s) IPR003000 NAD-dependent histone deacetylase, silent information regulator Sir2 "; GO:0003700 NbS00004220g0020.1 protein AED:0.40 eAED:0.40 QI:330|0.7|0.72|1|0.5|0.54|11|485|261; (*GB) gi|357468101|ref|XP_003604335.1| (e_value=5e-47) hypothetical protein MTR_4g009710 [Medicago truncatula];; (*TAIR) AT1G15790.2 (e_value=5e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:5438477-5439820 REVERSE LENGTH=179;; (*ITAG) Solyc04g009500.2.1 (e_value=3e-39) genomic_reference:SL2.40ch04 gene_region:2915852-2927412 transcript_region:SL2.40ch04:2915852..2927412+ go_terms:GO:0006355 functional_description:"CTV.22 (AHRD V1 *-*- Q8H6Q7_PONTR); contains Interpro domain(s) IPR003101 Coactivator CBP, KIX "; GO:0006355 NbS00004220g0003.1 protein AED:0.42 eAED:0.42 QI:128|1|1|1|1|1|3|107|313; (*GB) gi|311780299|gb|ADQ08688.1| (e_value=0.0) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=8e-115) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=6e-116) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc04g009440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2856469-2858639 transcript_region:SL2.40ch04:2856469..2858639+ go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein (AHRD V1 ***- Q6RH27_SOLLC); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00045489g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0.9|1|0.77|0.7|10|308|516; (*GB) gi|350534874|ref|NP_001233908.1| (e_value=0.0) AP2 transcription factor SlAP2b [Solanum lycopersicum];; (*SWP) sp|P47927|AP2_ARATH (e_value=2e-114) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=2e-115) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc02g064960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30651561-30655131 transcript_region:SL2.40ch02:30651561..30655131+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001763g0002.1 protein AED:0.01 eAED:0.01 QI:165|1|1|1|0|0|2|19|75; (*GB) gi|294461408|gb|ADE76265.1| (e_value=6e-18) unknown [Picea sitchensis];; (*TAIR) AT5G55850.1 (e_value=4e-18) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc02g093670.2.1 (e_value=4e-22) genomic_reference:SL2.40ch02 gene_region:49011572-49013000 transcript_region:SL2.40ch02:49011572..49013000+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- B6SJI8_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00017984g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.25|0.2|1|0.5|0.2|5|282|780; (*GB) gi|26224736|gb|AAN76362.1| (e_value=4e-162) serpin-like protein, partial [Citrus x paradisi];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=6e-145) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=4e-146) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61541595-61543506 transcript_region:SL2.40ch04:61541595..61543506- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00019921g0009.1 protein AED:0.09 eAED:0.14 QI:41|0|0.66|1|0.5|0.66|3|152|197; (*ITAG) Solyc12g013540.1.1 (e_value=1e-60) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4393942-4396738 transcript_region:SL2.40ch12:4393942..4396738+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019921g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|767; (*GB) gi|359493687|ref|XP_003634651.1| (e_value=0.0) PREDICTED: receptor-like protein kinase THESEUS 1-like [Vitis vinifera];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=0.0) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=0.0) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc10g006870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1295869-1298391 transcript_region:SL2.40ch10:1295869..1298391- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00019921g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|224115046|ref|XP_002316926.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=8e-15) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=6e-16) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc07g063480.2.1 (e_value=1e-21) genomic_reference:SL2.40ch07 gene_region:63184770-63188678 transcript_region:SL2.40ch07:63184770..63188678+ go_terms:GO:0005515,GO:0004674 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0005515,GO:0004674 NbS00040988g0001.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|2|0|625; (*GB) gi|365222880|gb|AEW69792.1| (e_value=0.0) Hop-interacting protein THI029 [Solanum lycopersicum];; (*SWP) sp|O54922|EXOC7_RAT (e_value=2e-18) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G58430.1 (e_value=0.0) | Symbols: ATEXO70B1, EXO70B1 | exocyst subunit exo70 family protein B1 | chr5:23621460-23623334 REVERSE LENGTH=624;; (*ITAG) Solyc08g066070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:51728386-51730281 transcript_region:SL2.40ch08:51728386..51730281- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00040988g0008.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|352; (*GB) gi|297745814|emb|CBI15870.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22918|GDL41_ARATH (e_value=1e-131) GDSL esterase/lipase At2g30220 OS=Arabidopsis thaliana GN=At2g30220 PE=2 SV=1;; (*TAIR) AT2G30220.1 (e_value=1e-132) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:12891266-12892537 REVERSE LENGTH=358;; (*ITAG) Solyc09g030370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19776545-19777764 transcript_region:SL2.40ch09:19776545..19777764+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g30310 (AHRD V1 ***- GDL42_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00043882g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.33|1|0.5|0.66|3|43|232; (*GB) gi|359474801|ref|XP_002279494.2| (e_value=9e-77) PREDICTED: coiled-coil domain-containing protein 124-A-like [Vitis vinifera];; (*SWP) sp|Q96CT7|CC124_HUMAN (e_value=8e-19) Coiled-coil domain-containing protein 124 OS=Homo sapiens GN=CCDC124 PE=1 SV=1;; (*TAIR) AT1G16210.1 (e_value=1e-75) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). | chr1:5546352-5547447 REVERSE LENGTH=234;; (*ITAG) Solyc01g111940.2.1 (e_value=8e-94) genomic_reference:SL2.40ch01 gene_region:89857764-89861925 transcript_region:SL2.40ch01:89857764..89861925+ functional_description:"Coiled-coil domain-containing protein 124 (AHRD V1 *-*- CC124_XENTR); contains Interpro domain(s) IPR010422 Protein of unknown function DUF1014 "; NbS00017274g0007.1 protein AED:0.19 eAED:0.20 QI:87|0.7|0.63|1|0.9|0.81|11|1440|290; (*GB) gi|195625200|gb|ACG34430.1| (e_value=5e-62) hypothetical protein [Zea mays];; (*SWP) sp|Q9FLU1|BIN4_ARATH (e_value=7e-55) DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2;; (*TAIR) AT5G24630.6 (e_value=5e-56) | Symbols: BIN4 | double-stranded DNA binding | chr5:8432523-8435682 REVERSE LENGTH=454;; (*ITAG) Solyc03g079950.2.1 (e_value=2e-118) genomic_reference:SL2.40ch03 gene_region:45408629-45415871 transcript_region:SL2.40ch03:45408629..45415871+ functional_description:"DNA-binding protein BIN4 (AHRD V1 *-*- BIN4_ARATH)"; NbS00017274g0012.1 protein AED:0.34 eAED:0.35 QI:142|0.89|0.75|1|0.84|0.85|20|713|865; (*GB) gi|302144008|emb|CBI23113.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P73625|MUTS2_SYNY3 (e_value=4e-70) MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutSB PE=3 SV=1;; (*TAIR) AT5G54090.1 (e_value=0.0) | Symbols: | DNA mismatch repair protein MutS, type 2 | chr5:21948283-21952550 REVERSE LENGTH=796;; (*ITAG) Solyc03g080010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45443458-45457735 transcript_region:SL2.40ch03:45443458..45457735- go_terms:GO:0003677,GO:0003824 functional_description:"MutS2 protein (AHRD V1 ***- B0JH18_MICAN); contains Interpro domain(s) IPR005747 DNA mismatch repair protein MutS, type 2 "; GO:0003677,GO:0003824 NbS00017274g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|225455161|ref|XP_002268370.1| (e_value=3e-88) PREDICTED: uncharacterized protein LOC100262360 [Vitis vinifera];; (*TAIR) AT5G24610.1 (e_value=1e-75) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8428577-8429017 FORWARD LENGTH=146;; (*ITAG) Solyc03g079970.1.1 (e_value=1e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45421851-45422288 transcript_region:SL2.40ch03:45421851..45422288- functional_description:"Unknown Protein (AHRD V1)"; NbS00017274g0018.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|262; (*GB) gi|356518681|ref|XP_003528007.1| (e_value=7e-107) PREDICTED: pathogenesis-related protein 5-like [Glycine max];; (*SWP) sp|P28493|PR5_ARATH (e_value=3e-59) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT5G24620.1 (e_value=2e-94) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:8430918-8432289 FORWARD LENGTH=420;; (*ITAG) Solyc03g079960.2.1 (e_value=1e-142) genomic_reference:SL2.40ch03 gene_region:45416271-45417505 transcript_region:SL2.40ch03:45416271..45417505- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9FLU2_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00017274g0015.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|53 NbS00000443g0008.1 protein AED:0.09 eAED:0.09 QI:102|1|1|1|1|1|3|65|257; (*GB) gi|4027895|gb|AAC96079.1| (e_value=2e-173) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q7XWU8|EXPA1_ORYSJ (e_value=3e-133) Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2;; (*TAIR) AT1G20190.1 (e_value=3e-129) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc12g089380.1.1 (e_value=2e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62933298-62935296 transcript_region:SL2.40ch12:62933298..62935296- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00000443g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|269; (*GB) gi|91940084|gb|ABE66389.1| (e_value=5e-80) peroxidase [Striga asiatica];; (*SWP) sp|Q9LT91|PER66_ARATH (e_value=9e-61) Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1;; (*TAIR) AT5G51890.1 (e_value=7e-62) | Symbols: | Peroxidase superfamily protein | chr5:21091163-21092335 REVERSE LENGTH=322;; (*ITAG) Solyc12g089370.1.1 (e_value=7e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62930211-62931423 transcript_region:SL2.40ch12:62930211..62931423- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- B9GQQ9_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00000443g0013.1 protein AED:0.21 eAED:0.22 QI:193|0.6|0.66|0.83|0.8|1|6|0|544; (*GB) gi|359492285|ref|XP_002279250.2| (e_value=3e-62) PREDICTED: uncharacterized protein LOC100243746 [Vitis vinifera];; (*ITAG) Solyc04g081820.2.1 (e_value=2e-100) genomic_reference:SL2.40ch04 gene_region:63303699-63308948 transcript_region:SL2.40ch04:63303699..63308948- functional_description:"La domain containing protein expressed (AHRD V1 *--- Q8LMP9_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00033342g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.75|1|1|1|4|0|394; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=0.0) strictosidine synthase, putative [Ricinus communis];; (*SWP) sp|Q803F5|APMAP_DANRE (e_value=8e-50) Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1;; (*TAIR) AT1G08470.1 (e_value=0.0) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00042169g0001.1 protein AED:0.02 eAED:0.02 QI:253|1|1|1|0.75|0.8|5|157|521; (*GB) gi|225442042|ref|XP_002272087.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241213 [Vitis vinifera];; (*TAIR) AT3G14170.1 (e_value=1e-146) | Symbols: | Plant protein of unknown function (DUF936) | chr3:4696115-4697989 REVERSE LENGTH=505;; (*ITAG) Solyc12g049500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46593947-46596176 transcript_region:SL2.40ch12:46593947..46596176- functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00006787g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|1|1|1|4|0|1161; (*GB) gi|359491309|ref|XP_003634262.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Vitis vinifera];; (*SWP) sp|C0LGR3|Y4265_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1;; (*TAIR) AT5G56040.2 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr5:22695050-22698410 FORWARD LENGTH=1090;; (*ITAG) Solyc03g112580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57019900-57024495 transcript_region:SL2.40ch03:57019900..57024495+ go_terms:GO:0004674,GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0004674,GO:0001653 NbS00006787g0002.1 protein AED:0.11 eAED:0.11 QI:560|1|0.75|1|0|0|4|0|473; (*GB) gi|359487106|ref|XP_002274114.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M8M3|PP136_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1;; (*TAIR) AT1G80550.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:30285358-30286704 REVERSE LENGTH=448;; (*ITAG) Solyc03g112560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57000247-57002379 transcript_region:SL2.40ch03:57000247..57002379+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00019567g0012.1 protein AED:0.27 eAED:0.27 QI:48|1|1|1|1|1|5|234|246; (*GB) gi|83283989|gb|ABC01902.1| (e_value=3e-160) putative 60S ribosomal protein L7-like protein [Solanum tuberosum];; (*SWP) sp|P60040|RL72_ARATH (e_value=1e-84) 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1;; (*TAIR) AT2G01250.1 (e_value=1e-85) | Symbols: | Ribosomal protein L30/L7 family protein | chr2:132943-134264 REVERSE LENGTH=242;; (*ITAG) Solyc06g068400.2.1 (e_value=4e-161) genomic_reference:SL2.40ch06 gene_region:38764144-38767352 transcript_region:SL2.40ch06:38764144..38767352+ go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0042803 NbS00019567g0014.1 protein AED:0.07 eAED:0.08 QI:0|0|0.5|1|0|0|2|139|312; (*GB) gi|225465508|ref|XP_002272165.1| (e_value=0.0) PREDICTED: probable CCR4-associated factor 1 homolog 7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SKZ2|CAF1G_ARATH (e_value=4e-161) Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2;; (*TAIR) AT2G32070.1 (e_value=3e-162) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275;; (*ITAG) Solyc03g117030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60347167-60347991 transcript_region:SL2.40ch03:60347167..60347991+ go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00019567g0013.1 protein AED:0.20 eAED:0.20 QI:137|1|0.66|1|0|0.66|3|340|225; (*GB) gi|224075669|ref|XP_002304720.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-39) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G80690.1 (e_value=8e-62) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:30329283-30330524 REVERSE LENGTH=227;; (*ITAG) Solyc06g068380.2.1 (e_value=4e-94) genomic_reference:SL2.40ch06 gene_region:38752922-38754704 transcript_region:SL2.40ch06:38752922..38754704- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00019567g0104.1 protein AED:0.06 eAED:0.13 QI:0|0|0.16|1|1|1|6|0|479 NbS00019567g0107.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.83|1|0.8|0.83|6|267|146 NbS00004611g0006.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.2|1|0.5|0.4|5|0|585; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=2e-114) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=8e-43) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-43) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc04g007060.2.1 (e_value=4e-162) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009946g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.66|0|0|3|0|89; (*GB) gi|225430838|ref|XP_002273417.1| (e_value=9e-39) PREDICTED: probable NEDD8-conjugating enzyme Ubc12-like [Vitis vinifera];; (*SWP) sp|Q9SDY5|RCE1_ARATH (e_value=2e-38) NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1;; (*TAIR) AT4G36800.2 (e_value=1e-39) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184;; (*ITAG) Solyc04g079970.2.1 (e_value=4e-41) genomic_reference:SL2.40ch04 gene_region:61876931-61880760 transcript_region:SL2.40ch04:61876931..61880760+ go_terms:GO:0019788 functional_description:"Ubiquitin-conjugating enzyme E2 11 (AHRD V1 ***- UBC11_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019788 NbS00007244g0015.1 protein AED:0.08 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|200; (*ITAG) Solyc08g081630.1.1 (e_value=9e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61787281-61789385 transcript_region:SL2.40ch08:61787281..61789385+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 19 (AHRD V1 *-*- C9DI08_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00007244g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|98; (*ITAG) Solyc11g068410.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00007244g0014.1 protein AED:0.02 eAED:0.02 QI:36|1|1|1|0|0.5|2|164|232; (*GB) gi|225426130|ref|XP_002272759.1| (e_value=2e-79) PREDICTED: protein LURP-one-related 17 [Vitis vinifera];; (*SWP) sp|A0MFL4|LOR17_ARATH (e_value=2e-49) Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2;; (*TAIR) AT5G41590.1 (e_value=1e-50) | Symbols: | Protein of unknown function (DUF567) | chr5:16632221-16633896 REVERSE LENGTH=221;; (*ITAG) Solyc08g081680.1.1 (e_value=6e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61814047-61815302 transcript_region:SL2.40ch08:61814047..61815302- functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00007244g0013.1 protein AED:0.15 eAED:0.15 QI:183|0.36|0.16|0.91|0.45|0.41|12|0|1505; (*GB) gi|224053847|ref|XP_002298009.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G11270.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:6854461-6859490 FORWARD LENGTH=1446;; (*ITAG) Solyc08g081640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61790429-61799592 transcript_region:SL2.40ch08:61790429..61799592- go_terms:GO:0000166 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 *--- C1H4E7_PARBA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00024949g0014.1 protein AED:0.08 eAED:0.14 QI:0|0.33|0.25|1|0|0.25|4|0|231; (*GB) gi|224126749|ref|XP_002319917.1| (e_value=1e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S8I2|ULT2_ARATH (e_value=4e-67) Protein ULTRAPETALA 2 OS=Arabidopsis thaliana GN=ULT2 PE=2 SV=1;; (*TAIR) AT2G20825.1 (e_value=3e-68) | Symbols: ULT2 | Developmental regulator, ULTRAPETALA | chr2:8965845-8966795 REVERSE LENGTH=228;; (*ITAG) Solyc12g010760.1.1 (e_value=7e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3676998-3678363 transcript_region:SL2.40ch12:3676998..3678363+ functional_description:"Transcription factor (Fragment) (AHRD V1 ***- D6MKF6_9ASPA)"; NbS00024949g0008.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.75|1|1|4|0|718; (*GB) gi|359493689|ref|XP_002281860.2| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Vitis vinifera];; (*SWP) sp|Q9LID0|LDL2_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1;; (*TAIR) AT3G13682.1 (e_value=0.0) | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509 REVERSE LENGTH=746;; (*ITAG) Solyc07g063450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63154192-63158475 transcript_region:SL2.40ch07:63154192..63158475+ go_terms:GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **-* D7L1H5_ARALY); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0008131 NbS00024949g0015.1 protein AED:0.28 eAED:0.28 QI:0|0.68|0.64|1|0.37|0.41|17|538|437; (*GB) gi|255586090|ref|XP_002533709.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P94479|YNBB_BACSU (e_value=4e-98) Uncharacterized protein ynbB OS=Bacillus subtilis (strain 168) GN=ynbB PE=4 SV=2;; (*ITAG) Solyc07g063510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63199727-63205246 transcript_region:SL2.40ch07:63199727..63205246+ go_terms:GO:0015083 functional_description:"Aluminum resistance protein-like (AHRD V1 **** Q54763_SYNE7); contains Interpro domain(s) IPR009651 Aluminium resistance "; GO:0015083 NbS00026674g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.42|0.25|0.87|0.28|0.5|8|0|536; (*GB) gi|225463384|ref|XP_002271705.1| (e_value=4e-170) PREDICTED: uncharacterized protein LOC100258847 [Vitis vinifera];; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=3e-57) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1;; (*TAIR) AT5G46410.2 (e_value=6e-111) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=456;; (*ITAG) Solyc02g071250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35304214-35311172 transcript_region:SL2.40ch02:35304214..35311172- go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00043285g0001.1 protein AED:0.16 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225444185|ref|XP_002269497.1| (e_value=2e-51) PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera];; (*SWP) sp|P10975|NLTPC_RICCO (e_value=1e-48) Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2;; (*TAIR) AT3G51590.1 (e_value=6e-19) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=7e-20) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00003327g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|389; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=3e-55) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*TAIR) AT5G09530.1 (e_value=2e-22) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g038250.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34782096-34783189 transcript_region:SL2.40ch12:34782096..34783189+ functional_description:"Extensin-like protein Ext1 (AHRD V1 **-- Q8VWM5_SOLLC)"; NbS00025124g0001.1 protein AED:0.34 eAED:0.39 QI:0|0.8|0.66|1|1|1|6|0|320; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=3e-95) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=1e-86) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=8e-88) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc11g044320.1.1 (e_value=5e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35412464-35418671 transcript_region:SL2.40ch11:35412464..35418671- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone (AHRD V1 ***- B9HN09_POPTR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0005634,GO:0003677,GO:0045449 NbS00025124g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.8|1|1|1|5|0|192; (*GB) gi|5932418|gb|AAD56950.1|AF184885_1 (e_value=2e-136) LIM domain protein PLIM1 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=9e-101) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=5e-111) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc11g044740.1.1 (e_value=6e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36050109-36051260 transcript_region:SL2.40ch11:36050109..36051260+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00002199g0007.1 protein AED:0.28 eAED:0.28 QI:173|1|1|1|0.8|0.66|6|317|119; (*GB) gi|224105295|ref|XP_002313757.1| (e_value=3e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q945M1|NDUB9_ARATH (e_value=3e-61) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1;; (*TAIR) AT4G34700.1 (e_value=2e-62) | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster biogenesis protein | chr4:16556874-16558362 FORWARD LENGTH=117;; (*ITAG) Solyc01g110390.2.1 (e_value=7e-76) genomic_reference:SL2.40ch01 gene_region:88860841-88872420 transcript_region:SL2.40ch01:88860841..88872420+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB9_MOUSE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0005515,GO:0008137 NbS00002199g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|732; (*GB) gi|40645472|dbj|BAD06581.1| (e_value=0.0) arginine decarboxylase [Nicotiana tabacum];; (*SWP) sp|Q43075|SPE1_PEA (e_value=0.0) Arginine decarboxylase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G34710.2 (e_value=0.0) | Symbols: ADC2, SPE2, ATADC2 | arginine decarboxylase 2 | chr4:16560315-16562450 REVERSE LENGTH=711;; (*ITAG) Solyc10g054440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50892473-50894596 transcript_region:SL2.40ch10:50892473..50894596- go_terms:GO:0008792 functional_description:"Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC); contains Interpro domain(s) IPR002985 Arginine decarboxylase "; GO:0008792 NbS00002199g0008.1 protein AED:0.46 eAED:0.65 QI:0|0|0|1|0|0|2|0|72; (*GB) gi|388521535|gb|AFK48829.1| (e_value=4e-17) unknown [Lotus japonicus]; NbS00002199g0009.1 protein AED:0.42 eAED:0.63 QI:0|0|0|1|0|0|2|0|60; (*GB) gi|33318707|gb|AAQ05247.1| (e_value=2e-17) cytochrome b-559 alpha subunit [Podocarpus macrophyllus var. maki];; (*SWP) sp|P36442|PSBE_MESCR (e_value=1e-18) Cytochrome b559 subunit alpha OS=Mesembryanthemum crystallinum GN=psbE PE=3 SV=2;; (*ITAG) ATCG00580.1 (e_value=1e-19) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=4e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00017761g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|506; (*GB) gi|308229874|gb|ADO24345.1| (e_value=0.0) cytochrome P450 A [Capsicum annuum];; (*SWP) sp|O81117|C94A1_VICSA (e_value=2e-137) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT3G48520.1 (e_value=0.0) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc03g111300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55969688-55971163 transcript_region:SL2.40ch03:55969688..55971163+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001637g0003.1 protein AED:0.23 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|89 NbS00001637g0007.1 protein AED:0.44 eAED:0.50 QI:0|0.33|0.25|1|0|0|4|0|182; (*GB) gi|356539002|ref|XP_003537989.1| (e_value=5e-59) PREDICTED: uncharacterized protein C20orf24 homolog [Glycine max];; (*SWP) sp|Q9CQT9|CT024_MOUSE (e_value=9e-21) Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G59410.1 (e_value=1e-56) | Symbols: | Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130;; (*ITAG) Solyc06g076260.2.1 (e_value=8e-73) genomic_reference:SL2.40ch06 gene_region:43767995-43772373 transcript_region:SL2.40ch06:43767995..43772373- go_terms:GO:0005515 functional_description:"C20orf24 homolog (AHRD V1 **-- C1BLD2_OSMMO); contains Interpro domain(s) IPR010742 Rab5-interacting "; GO:0005515 NbS00017775g0003.1 protein AED:0.40 eAED:0.59 QI:352|0.5|0.6|1|0.5|0.4|5|0|96 NbS00017775g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|462; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=1e-150) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=3e-94) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=2e-144) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00052752g0008.1 protein AED:0.28 eAED:0.29 QI:0|0.33|0.75|1|0.66|1|4|90|347; (*GB) gi|255554903|ref|XP_002518489.1| (e_value=1e-137) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=9e-112) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT1G61900.3 (e_value=1e-113) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). | chr1:22882508-22884722 REVERSE LENGTH=429;; (*ITAG) Solyc03g031680.2.1 (e_value=1e-178) genomic_reference:SL2.40ch03 gene_region:8424137-8428711 transcript_region:SL2.40ch03:8424137..8428711+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00026257g0005.1 protein AED:0.14 eAED:0.15 QI:0|1|0.75|1|1|1|8|0|417; (*GB) gi|225441787|ref|XP_002283653.1| (e_value=0.0) PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=0.0) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=0.0) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc03g058970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase "; NbS00058500g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|372|256; (*GB) gi|225449374|ref|XP_002282374.1| (e_value=2e-106) PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=6e-67) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT2G39795.1 (e_value=5e-68) | Symbols: | Mitochondrial glycoprotein family protein | chr2:16597026-16598028 FORWARD LENGTH=250;; (*ITAG) Solyc03g079930.2.1 (e_value=1e-148) genomic_reference:SL2.40ch03 gene_region:45398282-45399790 transcript_region:SL2.40ch03:45398282..45399790- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7LDS6_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00058500g0006.1 protein AED:0.20 eAED:0.21 QI:0|0.81|0.75|1|1|1|12|398|815; (*GB) gi|359486608|ref|XP_002277667.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246247 [Vitis vinifera];; (*SWP) sp|Q3B7M6|NEDD1_BOVIN (e_value=1e-36) Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1;; (*TAIR) AT5G05970.1 (e_value=0.0) | Symbols: NEDD1 | Transducin/WD40 repeat-like superfamily protein | chr5:1795464-1799313 FORWARD LENGTH=781;; (*ITAG) Solyc03g079920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45390255-45398120 transcript_region:SL2.40ch03:45390255..45398120+ functional_description:"WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00000126g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|193527444|gb|ACF19787.1| (e_value=2e-107) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-12) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=2e-13) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000126g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|193527444|gb|ACF19787.1| (e_value=2e-149) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=7e-11) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=5e-12) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=4e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000126g0016.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.16|6|0|381; (*GB) gi|359472798|ref|XP_002274984.2| (e_value=3e-92) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q56X05|PPR15_ARATH (e_value=8e-48) Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2;; (*TAIR) AT1G06150.1 (e_value=3e-47) | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322;; (*ITAG) Solyc06g066380.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00000126g0015.1 protein AED:0.30 eAED:0.41 QI:0|0|0|1|0|0.25|4|0|243; (*GB) gi|296083063|emb|CBI22467.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=1e-30) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=1e-31) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=3e-55) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00000126g0014.1 protein AED:0.43 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|119; (*GB) gi|296083063|emb|CBI22467.3| (e_value=6e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g107180.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00000126g0017.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|123; (*GB) gi|297738046|emb|CBI27247.3| (e_value=9e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G01030.1 (e_value=4e-16) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:448336-450642 REVERSE LENGTH=768;; (*ITAG) Solyc06g066380.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00000126g0018.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|107; (*GB) gi|359472798|ref|XP_002274984.2| (e_value=1e-34) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9LIE7|PP246_ARATH (e_value=4e-17) Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1;; (*TAIR) AT3G22150.1 (e_value=3e-18) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:7813028-7815490 FORWARD LENGTH=820;; (*ITAG) Solyc06g066380.1.1 (e_value=4e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00058911g0003.1 protein AED:0.25 eAED:0.25 QI:426|0.7|0.72|1|0.9|0.72|11|0|583; (*GB) gi|6573718|gb|AAF17638.1|AC009978_14 (e_value=0.0) T23E18.20 [Arabidopsis thaliana];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-64) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G76270.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:28613554-28616537 REVERSE LENGTH=572;; (*ITAG) Solyc12g094590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63107924-63112866 transcript_region:SL2.40ch12:63107924..63112866- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00006041g0009.1 protein AED:0.11 eAED:0.11 QI:146|1|0.87|1|0.85|1|8|300|440; (*GB) gi|297741911|emb|CBI33346.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q944R1|PLY15_ARATH (e_value=0.0) Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1;; (*TAIR) AT4G13710.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:7962550-7966012 FORWARD LENGTH=470;; (*ITAG) Solyc09g061890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56216130-56219823 transcript_region:SL2.40ch09:56216130..56219823+ go_terms:GO:0016829 functional_description:"Pectate lyase 1-27 (AHRD V1 **** B9TU35_9ROSI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00006041g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.5|0.66|0.8|0.83|6|270|194; (*GB) gi|356567750|ref|XP_003552079.1| (e_value=1e-89) PREDICTED: sterol 3-beta-glucosyltransferase-like [Glycine max];; (*SWP) sp|Q54IL5|UGT52_DICDI (e_value=5e-21) UDP-sugar-dependent glycosyltransferase 52 OS=Dictyostelium discoideum GN=ugt52 PE=2 SV=1;; (*TAIR) AT3G07020.2 (e_value=4e-75) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2218120-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc09g061860.2.1 (e_value=6e-91) genomic_reference:SL2.40ch09 gene_region:56137404-56149985 transcript_region:SL2.40ch09:56137404..56149985+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00006041g0006.1 protein AED:0.05 eAED:0.28 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|225464212|ref|XP_002264981.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100246047 [Vitis vinifera];; (*ITAG) Solyc09g061870.1.1 (e_value=9e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:56153766-56154167 transcript_region:SL2.40ch09:56153766..56154167+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030775g0007.1 protein AED:0.16 eAED:0.16 QI:169|0.6|0.5|1|0.4|0.66|6|0|504; (*GB) gi|359483356|ref|XP_003632942.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 1-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G11820.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:3991144-3993327 REVERSE LENGTH=511;; (*ITAG) Solyc02g080660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39414865-39418229 transcript_region:SL2.40ch02:39414865..39418229+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6UBU1_MAIZE); contains Interpro domain(s) IPR012946 X8 "; GO:0005975 NbS00030775g0006.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0|2|0|384; (*GB) gi|359497575|ref|XP_003635570.1| (e_value=1e-134) PREDICTED: probable F-box protein At4g22030-like [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=3e-85) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G04480.1 (e_value=3e-90) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398;; (*ITAG) Solyc02g080850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39542836-39544104 transcript_region:SL2.40ch02:39542836..39544104+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00011019g0013.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.3|1|0.66|0.7|10|331|1723; (*GB) gi|359489318|ref|XP_002269466.2| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 4G-like [Vitis vinifera];; (*SWP) sp|Q76E23|IF4G1_ARATH (e_value=0.0) Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2;; (*TAIR) AT3G60240.4 (e_value=0.0) | Symbols: EIF4G, CUM2 | eukaryotic translation initiation factor 4G | chr3:22261842-22268295 FORWARD LENGTH=1727;; (*ITAG) Solyc08g077700.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58770890-58780639 transcript_region:SL2.40ch08:58770890..58780639+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 gamma 1 (AHRD V1 *-*- A9QXE6_MESAU); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00011019g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.83|1|0.2|0|6|450|833; (*GB) gi|359474506|ref|XP_002279753.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267731 [Vitis vinifera];; (*SWP) sp|B4NXB8|RAD54_DROYA (e_value=2e-46) DNA repair and recombination protein RAD54-like OS=Drosophila yakuba GN=okr PE=3 SV=2;; (*TAIR) AT1G05490.1 (e_value=2e-167) | Symbols: chr31 | chromatin remodeling 31 | chr1:1618795-1623195 REVERSE LENGTH=1410;; (*ITAG) Solyc08g077690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58764406-58768051 transcript_region:SL2.40ch08:58764406..58768051+ go_terms:GO:0005524 functional_description:"Chromodomain helicase DNA binding protein 5 (AHRD V1 **-- B1AK51_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00032509g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|242; (*GB) gi|283049400|gb|ADB07168.1| (e_value=2e-156) DEAD-box RNA helicase-like protein [Prunus persica];; (*SWP) sp|P35683|IF4A1_ORYSJ (e_value=8e-157) Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2;; (*TAIR) AT3G13920.4 (e_value=1e-155) | Symbols: EIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407;; (*ITAG) Solyc12g095990.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63417253-63419388 transcript_region:SL2.40ch12:63417253..63419388- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00032509g0006.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|169; (*SWP) sp|Q40468|IF415_TOBAC (e_value=2e-13) Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc06g062800.2.1 (e_value=5e-13) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00014917g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|454; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=0.0) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=2e-107) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc06g068590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38903301-38910601 transcript_region:SL2.40ch06:38903301..38910601+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014917g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|12|218|489; (*GB) gi|195547035|dbj|BAG68298.1| (e_value=0.0) serine palmitoyltransferase [Nicotiana benthamiana];; (*SWP) sp|O15270|SPTC2_HUMAN (e_value=1e-176) Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1;; (*TAIR) AT5G23670.2 (e_value=0.0) | Symbols: LCB2 | long chain base2 | chr5:7981889-7985037 FORWARD LENGTH=489;; (*ITAG) Solyc03g098220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54022399-54028329 transcript_region:SL2.40ch03:54022399..54028329- go_terms:GO:0004758 functional_description:"Serine palmitoyltransferase (AHRD V1 **-* B3Y000_NICBE); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004758 NbS00014917g0010.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|0.33|0|4|0|124; (*ITAG) Solyc03g117790.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00037693g0009.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|0.66|3|0|384; (*GB) gi|359487780|ref|XP_003633650.1| (e_value=1e-117) PREDICTED: uncharacterized protein LOC100852866 [Vitis vinifera];; (*SWP) sp|O60291|MGRN1_HUMAN (e_value=4e-35) E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2;; (*TAIR) AT3G06140.1 (e_value=5e-101) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g098750.2.1 (e_value=9e-159) genomic_reference:SL2.40ch01 gene_region:80943685-80949819 transcript_region:SL2.40ch01:80943685..80949819+ go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00037693g0003.1 protein AED:0.05 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|427; (*GB) gi|30687142|ref|NP_850851.1| (e_value=6e-24) heavy metal transport/detoxification domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT5G19090.3 (e_value=1e-26) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:6387910-6389855 FORWARD LENGTH=465;; (*ITAG) Solyc01g098760.2.1 (e_value=5e-52) genomic_reference:SL2.40ch01 gene_region:80961419-80963453 transcript_region:SL2.40ch01:80961419..80963453+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q2RAL3_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00000171g0002.1 protein AED:0.13 eAED:0.13 QI:1911|0.81|0.91|0.91|0.72|0.73|23|272|658; (*GB) gi|359494149|ref|XP_002277652.2| (e_value=0.0) PREDICTED: UPF0505 protein C16orf62 homolog [Vitis vinifera];; (*SWP) sp|Q8BWQ6|CP062_MOUSE (e_value=3e-33) UPF0505 protein C16orf62 homolog OS=Mus musculus PE=2 SV=2;; (*TAIR) AT1G50730.1 (e_value=2e-152) | Symbols: | unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | chr1:18795275-18802098 FORWARD LENGTH=923;; (*ITAG) Solyc12g005100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:52337-73422 transcript_region:SL2.40ch12:52337..73422- functional_description:"UPF0505 protein C16orf62 homolog (AHRD V1 **-- CP062_MOUSE)"; NbS00000171g0004.1 protein AED:0.34 eAED:0.35 QI:561|0.92|0.8|1|0.5|0.46|15|0|374; (*GB) gi|224061043|ref|XP_002300330.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLQ4|ODO2A_ARATH (e_value=2e-174) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1;; (*TAIR) AT5G55070.1 (e_value=1e-175) | Symbols: | Dihydrolipoamide succinyltransferase | chr5:22347637-22350409 FORWARD LENGTH=464;; (*ITAG) Solyc12g005080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:38442-41171 transcript_region:SL2.40ch12:38442..41171+ go_terms:GO:0004149 functional_description:"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (AHRD V1 **** B6TFG5_MAIZE); contains Interpro domain(s) IPR006255 Dihydrolipoamide succinyltransferase "; GO:0004149 NbS00000171g0021.1 protein AED:0.14 eAED:0.41 QI:0|0|0|1|0|0|2|0|118; (*GB) gi|255567699|ref|XP_002524828.1| (e_value=1e-18) bcr-associated protein, bap, putative [Ricinus communis];; (*TAIR) AT1G11905.2 (e_value=2e-16) | Symbols: | B-cell receptor-associated protein 31-like | chr1:4014958-4016222 FORWARD LENGTH=220;; (*ITAG) Solyc10g053910.1.1 (e_value=1e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:49688839-49689368 transcript_region:SL2.40ch10:49688839..49689368+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00007849g0010.1 protein AED:0.18 eAED:0.18 QI:368|1|1|1|0.25|0.11|9|346|347; (*GB) gi|350537683|ref|NP_001234816.1| (e_value=0.0) LOV/LOV protein [Solanum lycopersicum];; (*SWP) sp|O64511|TLOV1_ARATH (e_value=4e-110) Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2;; (*TAIR) AT2G02710.2 (e_value=3e-113) | Symbols: PLP, PLPA | PAS/LOV protein B | chr2:758812-760608 REVERSE LENGTH=397;; (*ITAG) Solyc05g007020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1607827-1612548 transcript_region:SL2.40ch05:1607827..1612548- go_terms:GO:0005515 functional_description:"Potassium voltage-gated channel subfamily H member 1 (AHRD V1 *--- KCNH1_RAT); contains Interpro domain(s) IPR013655 PAS fold-3 "; GO:0005515 NbS00007849g0006.1 protein AED:0.24 eAED:0.24 QI:164|1|1|1|1|1|2|293|177; (*GB) gi|224125548|ref|XP_002319613.1| (e_value=7e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57620.1 (e_value=2e-40) | Symbols: | glyoxal oxidase-related protein | chr3:21337564-21339207 FORWARD LENGTH=547;; (*ITAG) Solyc05g007010.1.1 (e_value=3e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1601748-1603568 transcript_region:SL2.40ch05:1601748..1603568- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00007849g0001.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|225424897|ref|XP_002269734.1| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100253553 [Vitis vinifera];; (*TAIR) AT1G14430.1 (e_value=4e-60) | Symbols: | glyoxal oxidase-related protein | chr1:4934359-4936053 FORWARD LENGTH=564;; (*ITAG) Solyc05g007010.1.1 (e_value=9e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1601748-1603568 transcript_region:SL2.40ch05:1601748..1603568- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00021433g0002.1 protein AED:0.37 eAED:0.46 QI:0|0|0|0.75|1|1|4|0|152; (*GB) gi|78191412|gb|ABB29927.1| (e_value=1e-25) unknown [Solanum tuberosum];; (*SWP) sp|Q9LZ41|RL354_ARATH (e_value=6e-24) 60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=4e-25) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=6e-28) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00022779g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|167; (*GB) gi|224109334|ref|XP_002333272.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05830.1 (e_value=6e-33) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc09g011770.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:5061936-5065593 transcript_region:SL2.40ch09:5061936..5065593- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00019710g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.52|0.40|0.90|0.90|0.81|22|0|791; (*GB) gi|296087776|emb|CBI35032.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5XHF8|VIP2_XENLA (e_value=9e-123) Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Xenopus laevis GN=ppip5k2 PE=2 SV=1;; (*TAIR) AT3G01310.1 (e_value=0.0) | Symbols: | Phosphoglycerate mutase-like family protein | chr3:94343-101603 REVERSE LENGTH=1056;; (*ITAG) Solyc02g087620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44563220-44582860 transcript_region:SL2.40ch02:44563220..44582860+ go_terms:GO:0033187 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (AHRD V1 **-* VIP2_MOUSE); contains Interpro domain(s) IPR000560 Histidine acid phosphatase "; GO:0033187 NbS00002081g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|104 NbS00002081g0004.1 protein AED:0.38 eAED:0.38 QI:184|1|0.5|1|0|0.5|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; NbS00002081g0114.1 protein AED:0.05 eAED:0.10 QI:0|0.4|0.16|0.66|0.6|0.66|6|0|754 NbS00002081g0115.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|1|0|0|4|0|152 NbS00043633g0005.1 protein AED:0.32 eAED:0.43 QI:0|0.5|0|1|0.5|0.33|3|0|158; (*GB) gi|255627775|gb|ACU14232.1| (e_value=5e-30) unknown [Glycine max];; (*SWP) sp|Q94AR4|CID2_ARATH (e_value=6e-14) Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1;; (*TAIR) AT4G14270.1 (e_value=4e-15) | Symbols: | Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. | chr4:8218517-8219037 FORWARD LENGTH=143;; (*ITAG) Solyc06g050700.2.1 (e_value=4e-33) genomic_reference:SL2.40ch06 gene_region:29962307-29963266 transcript_region:SL2.40ch06:29962307..29963266+ go_terms:GO:0005515 functional_description:"Early response to dehydration 15-like protein (Fragment) (AHRD V1 **-- Q5MEE1_PSEMZ)"; GO:0005515 NbS00011425g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|471; (*GB) gi|397567|emb|CAA81057.1| (e_value=0.0) UDP rhamnose: anthocyanidin-3-glucoside rhamnosyltransferase [Petunia x hybrida];; (*SWP) sp|Q43716|UFOG_PETHY (e_value=0.0) Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT PE=2 SV=1;; (*TAIR) AT5G54010.1 (e_value=3e-114) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:21919819-21921180 REVERSE LENGTH=453;; (*ITAG) Solyc09g059170.1.1 (e_value=3e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:49172213-49172944 transcript_region:SL2.40ch09:49172213..49172944- go_terms:GO:0047209 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 **** B6SU01_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00012337g0013.1 protein AED:0.09 eAED:0.09 QI:108|1|1|1|0.57|0.62|8|323|214; (*GB) gi|356547972|ref|XP_003542378.1| (e_value=7e-76) PREDICTED: 2Fe-2S ferredoxin-like [Glycine max];; (*SWP) sp|Q9AKH1|FER2_RICRI (e_value=5e-46) 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1;; (*TAIR) AT4G21090.3 (e_value=1e-73) | Symbols: ATMFDX2, MFDX2 | MITOCHONDRIAL FERREDOXIN 2 | chr4:11256663-11258269 REVERSE LENGTH=197;; (*ITAG) Solyc11g065640.1.1 (e_value=6e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48242732-48251509 transcript_region:SL2.40ch11:48242732..48251509+ go_terms:GO:0051536,GO:0051537 functional_description:"2Fe-2S ferredoxin (AHRD V1 *-*- B6U5I8_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536,GO:0051537 NbS00012337g0001.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|1|1|2|0|580; (*GB) gi|255584314|ref|XP_002532893.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FKR3|PP404_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1;; (*TAIR) AT5G38730.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15510901-15512691 FORWARD LENGTH=596;; (*ITAG) Solyc04g050550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:46729391-46731157 transcript_region:SL2.40ch04:46729391..46731157+ go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJV3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00012337g0014.1 protein AED:0.43 eAED:0.43 QI:105|1|0.5|1|0|0|2|0|176; (*GB) gi|18379315|ref|NP_565278.1| (e_value=8e-27) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT2G01870.1 (e_value=2e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:389846-390319 REVERSE LENGTH=157;; (*ITAG) Solyc11g065680.1.1 (e_value=3e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48299175-48301720 transcript_region:SL2.40ch11:48299175..48301720- functional_description:"Unknown Protein (AHRD V1)"; NbS00032478g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|79 NbS00032478g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|3|0|176; (*GB) gi|54261828|gb|AAV31178.1| (e_value=8e-37) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=2e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00025761g0013.1 protein AED:0.14 eAED:0.14 QI:117|1|0.92|1|0.91|0.92|13|0|958; (*GB) gi|296083340|emb|CBI22976.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4K4R6|GEX2_ARATH (e_value=0.0) Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana GN=GEX2 PE=2 SV=1;; (*TAIR) AT5G49150.1 (e_value=0.0) | Symbols: ATGEX2, GEX2 | gamete expressed 2 | chr5:19924760-19928527 FORWARD LENGTH=914;; (*ITAG) Solyc01g066510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:66889646-66898959 transcript_region:SL2.40ch01:66889646..66898959- functional_description:"Genomic DNA chromosome 5 TAC clone K21P3 (AHRD V1 **-- Q9FJ23_ARATH); contains Interpro domain(s) IPR001298 Filamin/ABP280 repeat "; NbS00025761g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.87|1|0.85|0.75|8|612|251; (*GB) gi|255551813|ref|XP_002516952.1| (e_value=1e-122) fumarylacetoacetate hydrolase, putative [Ricinus communis];; (*SWP) sp|Q86I22|FAHD1_DICDI (e_value=6e-75) Acylpyruvase FAHD1, mitochondrial OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1;; (*TAIR) AT4G15940.1 (e_value=1e-111) | Symbols: | Fumarylacetoacetate (FAA) hydrolase family | chr4:9038361-9040163 FORWARD LENGTH=222;; (*ITAG) Solyc01g066480.2.1 (e_value=1e-151) genomic_reference:SL2.40ch01 gene_region:66874829-66881864 transcript_region:SL2.40ch01:66874829..66881864- go_terms:GO:0008152 functional_description:"Fumarylacetoacetate hydrolase domain-containing protein 1 (AHRD V1 **-- B6TV71_MAIZE); contains Interpro domain(s) IPR002529 Fumarylacetoacetase, C-terminal-like "; GO:0008152 NbS00016207g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|349; (*GB) gi|225451467|ref|XP_002274131.1| (e_value=3e-169) PREDICTED: peroxidase 55-like [Vitis vinifera];; (*SWP) sp|Q96509|PER55_ARATH (e_value=2e-133) Peroxidase 55 OS=Arabidopsis thaliana GN=PER55 PE=1 SV=1;; (*TAIR) AT5G14130.1 (e_value=2e-134) | Symbols: | Peroxidase superfamily protein | chr5:4558862-4560028 REVERSE LENGTH=330;; (*ITAG) Solyc02g094180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49366167-49367835 transcript_region:SL2.40ch02:49366167..49367835+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** Q84UA9_ARTAN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00016207g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|592; (*GB) gi|225451469|ref|XP_002270737.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera];; (*TAIR) AT3G01930.2 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:319289-321488 REVERSE LENGTH=584;; (*ITAG) Solyc02g094190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00022964g0001.1 protein AED:0.02 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|503; (*GB) gi|209954699|dbj|BAG80540.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q66PF4|CGT_FRAAN (e_value=0.0) Cinnamate beta-D-glucosyltransferase OS=Fragaria ananassa GN=GT2 PE=1 SV=1;; (*TAIR) AT4G15480.1 (e_value=9e-180) | Symbols: UGT84A1 | UDP-Glycosyltransferase superfamily protein | chr4:8849000-8850472 REVERSE LENGTH=490;; (*ITAG) Solyc01g107560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86827224-86829017 transcript_region:SL2.40ch01:86827224..86829017- go_terms:GO:0050284 functional_description:"UDP-glucosyltransferase 1 (AHRD V1 **** C6ZRH7_CAPAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0050284 NbS00019432g0003.1 protein AED:0.24 eAED:0.24 QI:174|1|1|1|1|1|2|571|195; (*GB) gi|225463284|ref|XP_002264531.1| (e_value=1e-62) PREDICTED: uncharacterized protein LOC100245232 [Vitis vinifera];; (*TAIR) AT2G35900.1 (e_value=3e-51) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15070203-15071540 REVERSE LENGTH=192;; (*ITAG) Solyc10g081750.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62088354-62090732 transcript_region:SL2.40ch10:62088354..62090732- functional_description:"Mal d 1-associated protein (AHRD V1 ***- Q6X182_MALDO)"; NbS00039500g0003.1 protein AED:0.02 eAED:0.05 QI:87|0|0.5|1|0|1|2|298|480; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbC26020720g0002.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0|1|0.5|0.66|3|0|127; (*GB) gi|374671171|gb|AEZ56251.1| (e_value=3e-15) plastid 1-acylglycerol-phosphate acyltransferase [Jatropha curcas];; (*SWP) sp|Q41745|LPAT_MAIZE (e_value=9e-13) 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1;; (*TAIR) AT3G57650.1 (e_value=8e-14) | Symbols: LPAT2 | lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389;; (*ITAG) Solyc11g065890.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48552169-48563226 transcript_region:SL2.40ch11:48552169..48563226+ go_terms:GO:0008152 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 ***- Q2Z1Y8_PRUMU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0008152 NbS00055125g0001.1 protein AED:0.08 eAED:0.13 QI:0|0|0|1|1|1|3|0|1400; (*GB) gi|225435142|ref|XP_002284629.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250176 [Vitis vinifera];; (*SWP) sp|Q6PIJ4|NFRKB_MOUSE (e_value=7e-17) Nuclear factor related to kappa-B-binding protein OS=Mus musculus GN=Nfrkb PE=2 SV=1;; (*TAIR) AT3G45830.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). | chr3:16841277-16845173 FORWARD LENGTH=1298;; (*ITAG) Solyc11g072810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53088553-53092554 transcript_region:SL2.40ch11:53088553..53092554+ functional_description:"Nuclear factor related to kappa-B-binding protein related (AHRD V1 ***- Q2HU34_MEDTR)"; NbS00055125g0008.1 protein AED:0.14 eAED:0.14 QI:210|0.95|0.91|1|0.82|0.75|24|474|1041; (*GB) gi|297746163|emb|CBI16219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc11g072820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53093963-53100080 transcript_region:SL2.40ch11:53093963..53100080- go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00020631g0009.1 protein AED:0.23 eAED:0.23 QI:45|0.83|0.85|1|0.5|0.57|7|422|181; (*GB) gi|356516509|ref|XP_003526936.1| (e_value=4e-60) PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Glycine max];; (*TAIR) AT5G47900.6 (e_value=3e-42) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392556-19394963 FORWARD LENGTH=340;; (*ITAG) Solyc10g055620.1.1 (e_value=1e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52566136-52568727 transcript_region:SL2.40ch10:52566136..52568727+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_MOUSE)"; NbS00020631g0001.1 protein AED:0.26 eAED:0.26 QI:253|0.66|0.75|1|1|1|4|452|272; (*GB) gi|17017257|gb|AAL33586.1|AF440272_1 (e_value=0.0) aquaporin [Nicotiana tabacum];; (*SWP) sp|P93004|PIP27_ARATH (e_value=1e-165) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=1e-166) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc01g111660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89627217-89628682 transcript_region:SL2.40ch01:89627217..89628682+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- Q8W1A8_PETHY); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00020631g0011.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|61 NbS00020631g0010.1 protein AED:0.97 eAED:1.00 QI:3|0|0|0.33|0|0.66|3|0|81; (*GB) gi|255581844|ref|XP_002531722.1| (e_value=9e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G27730.1 (e_value=2e-19) | Symbols: | Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472;; (*ITAG) Solyc06g084590.2.1 (e_value=4e-20) genomic_reference:SL2.40ch06 gene_region:45950566-45959677 transcript_region:SL2.40ch06:45950566..45959677+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_HUMAN); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00020631g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|177; (*GB) gi|255560527|ref|XP_002521278.1| (e_value=2e-43) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G20940.1 (e_value=3e-28) | Symbols: | Protein of unknown function (DUF1279) | chr2:9002264-9002653 REVERSE LENGTH=129;; (*ITAG) Solyc01g111670.2.1 (e_value=1e-61) genomic_reference:SL2.40ch01 gene_region:89630013-89630864 transcript_region:SL2.40ch01:89630013..89630864+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009688 Protein of unknown function DUF1279 "; NbS00032402g0003.1 protein AED:0.09 eAED:0.10 QI:0|0.57|0.37|1|0.14|0|8|0|330; (*GB) gi|350535549|ref|NP_001234200.1| (e_value=7e-102) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q9LW07|PGLR3_ARATH (e_value=7e-76) Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1;; (*TAIR) AT4G35670.1 (e_value=3e-79) | Symbols: | Pectin lyase-like superfamily protein | chr4:16914996-16917201 FORWARD LENGTH=394;; (*ITAG) Solyc08g060970.2.1 (e_value=1e-127) genomic_reference:SL2.40ch08 gene_region:43354428-43359171 transcript_region:SL2.40ch08:43354428..43359171- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **-* Q9ZPI8_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00033177g0004.1 protein AED:0.18 eAED:0.20 QI:0|0|0|0.66|0.5|0.33|3|0|200; (*GB) gi|170243|gb|AAA34078.1| (e_value=9e-74) beta(1,3)-glucanase regulator [Nicotiana plumbaginifolia];; (*SWP) sp|P07979|GUB_NICPL (e_value=2e-72) Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3;; (*TAIR) AT4G16260.1 (e_value=2e-55) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g060020.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:62224181-62226272 transcript_region:SL2.40ch01:62224181..62226272- go_terms:GO:0005975 functional_description:"Beta-glucanase (AHRD V1 ***- Q53X08_NICPL); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00023948g0004.1 protein AED:0.04 eAED:0.04 QI:265|1|0.63|1|0.9|0.90|11|601|1732; (*GB) gi|359481257|ref|XP_002265561.2| (e_value=1e-143) PREDICTED: uncharacterized protein LOC100251663 [Vitis vinifera];; (*SWP) sp|Q5XPJ9|SCAR2_ARATH (e_value=7e-112) Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1;; (*TAIR) AT2G38440.1 (e_value=5e-113) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399;; (*ITAG) Solyc09g014980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7373131-7381944 transcript_region:SL2.40ch09:7373131..7381944+ functional_description:"Wiskott-Aldrich syndrome protein family member 2 (AHRD V1 *--- WASF2_HUMAN); contains Interpro domain(s) IPR003124 Actin-binding WH2 "; NbS00028797g0006.1 protein AED:0.13 eAED:0.13 QI:64|1|1|1|0.76|0.78|14|369|519; (*GB) gi|225438337|ref|XP_002272502.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB3-like [Vitis vinifera];; (*SWP) sp|Q9LF97|Y3295_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1;; (*TAIR) AT3G52950.2 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr3:19634866-19636536 FORWARD LENGTH=556;; (*ITAG) Solyc12g032950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:22261332-22286221 transcript_region:SL2.40ch12:22261332..22286221+ functional_description:"CBS domain-containing protein (AHRD V1 ***- D7LUC7_ARALY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00013584g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225462524|ref|XP_002265932.1| (e_value=1e-62) PREDICTED: auxin-induced protein 6B-like [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=1e-15) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G20810.1 (e_value=3e-25) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc07g014620.1.1 (e_value=1e-90) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:4983133-4983585 transcript_region:SL2.40ch07:4983133..4983585- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00013584g0007.1 protein AED:0.31 eAED:0.33 QI:187|0.69|0.71|1|0.61|0.71|14|60|498; (*GB) gi|27728145|gb|AAN15317.1| (e_value=0.0) isoamylase isoform 1 [Solanum tuberosum];; (*SWP) sp|O04196|ISOA1_ARATH (e_value=0.0) Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1;; (*TAIR) AT2G39930.1 (e_value=0.0) | Symbols: ISA1, ATISA1 | isoamylase 1 | chr2:16666078-16672183 FORWARD LENGTH=783;; (*ITAG) Solyc07g014590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4925611-4940909 transcript_region:SL2.40ch07:4925611..4940909- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- A7BWG1_9GAMM); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00042651g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|332308980|gb|AEE39461.1| (e_value=2e-43) SLF-interacting SKP1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|O65674|ASK12_ARATH (e_value=2e-39) SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1;; (*TAIR) AT4G34470.1 (e_value=1e-40) | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480 REVERSE LENGTH=152;; (*ITAG) Solyc11g008230.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2466407-2466883 transcript_region:SL2.40ch11:2466407..2466883+ go_terms:GO:0005515 functional_description:"SKP1-like 1 (AHRD V1 ***- B6CNU7_PETHY); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00014010g0006.1 protein AED:0.29 eAED:0.56 QI:0|0|0|0.66|0.5|0.33|3|0|197 NbS00008418g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.66|1|1|3|0|154 NbS00022204g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|224140797|ref|XP_002323765.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EC97|FBL14_ARATH (e_value=0.0) F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1;; (*TAIR) AT1G80570.1 (e_value=0.0) | Symbols: | RNI-like superfamily protein | chr1:30290828-30292231 FORWARD LENGTH=467;; (*ITAG) Solyc09g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4706115-4707518 transcript_region:SL2.40ch09:4706115..4707518+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- FBL14_ARATH); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0004842 NbS00022204g0002.1 protein AED:0.12 eAED:0.12 QI:881|0.7|0.71|1|0.85|0.80|21|326|983; (*GB) gi|218187756|gb|EEC70183.1| (e_value=1e-107) hypothetical protein OsI_00912 [Oryza sativa Indica Group];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=4e-103) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=6e-105) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc10g083630.1.1 (e_value=6e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00029941g0003.1 protein AED:0.16 eAED:0.16 QI:159|1|1|1|1|1|2|207|168; (*GB) gi|5823249|gb|AAD53078.1|AF168168_1 (e_value=2e-93) water stress-induced ER5 protein [Capsicum annuum];; (*SWP) sp|P46519|LEA14_SOYBN (e_value=7e-80) Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G01470.1 (e_value=3e-66) | Symbols: LEA14, LSR3 | Late embryogenesis abundant protein | chr1:172295-172826 REVERSE LENGTH=151;; (*ITAG) Solyc01g095140.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:78283227-78284039 transcript_region:SL2.40ch01:78283227..78284039+ go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (Fragment) (AHRD V1 **-- B7TGG5_PINSY); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00004058g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|563623|emb|CAA57772.1| (e_value=2e-24) putative DNA/RNA binding protein [Solanum tuberosum];; (*ITAG) Solyc06g062670.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:35943354-35946536 transcript_region:SL2.40ch06:35943354..35946536- go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M7Z8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00027612g0005.1 protein AED:0.04 eAED:0.04 QI:203|1|1|1|0.66|0.75|4|303|365; (*GB) gi|350538653|ref|NP_001234865.1| (e_value=3e-175) gibberellin 2-oxidase [Solanum lycopersicum];; (*SWP) sp|Q9XHM5|G2OX2_PEA (e_value=4e-129) Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1;; (*TAIR) AT1G02400.1 (e_value=1e-104) | Symbols: ATGA2OX4, ATGA2OX6, DTA1, GA2OX6 | gibberellin 2-oxidase 6 | chr1:486964-489391 FORWARD LENGTH=329;; (*ITAG) Solyc05g053340.2.1 (e_value=6e-178) genomic_reference:SL2.40ch05 gene_region:62611898-62618553 transcript_region:SL2.40ch05:62611898..62618553- go_terms:GO:0045543 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL5_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00012403g0005.1 protein AED:0.02 eAED:0.02 QI:25|1|0.5|1|0|0.5|2|0|261; (*GB) gi|224127967|ref|XP_002320208.1| (e_value=4e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPY0|DOF25_ARATH (e_value=3e-38) Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3;; (*TAIR) AT3G61850.4 (e_value=9e-48) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=324;; (*ITAG) Solyc10g009360.2.1 (e_value=9e-100) genomic_reference:SL2.40ch10 gene_region:3424646-3426235 transcript_region:SL2.40ch10:3424646..3426235- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 2 (AHRD V1 *-*- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00020110g0014.1 protein AED:0.29 eAED:0.29 QI:166|0.85|0.86|0.93|0.92|0.93|15|0|792; (*GB) gi|225448275|ref|XP_002274497.1| (e_value=0.0) PREDICTED: putative copper-transporting ATPase PAA1-like [Vitis vinifera];; (*SWP) sp|Q9SZC9|HMA6_ARATH (e_value=0.0) Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1;; (*TAIR) AT4G33520.3 (e_value=0.0) | Symbols: PAA1, HMA6 | P-type ATP-ase 1 | chr4:16118993-16125849 FORWARD LENGTH=949;; (*ITAG) Solyc01g105160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85193879-85204204 transcript_region:SL2.40ch01:85193879..85204204- go_terms:GO:0006508,GO:0016020,GO:0008152,GO:0016021 functional_description:"Copper-transporting P-type ATPase (AHRD V1 ***- Q12Y93_METBU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0006508,GO:0016020,GO:0008152,GO:0016021 NbS00020110g0013.1 protein AED:0.18 eAED:0.18 QI:442|0.9|0.81|1|1|1|11|0|921; (*GB) gi|356525878|ref|XP_003531548.1| (e_value=0.0) PREDICTED: potassium transporter 7-like [Glycine max];; (*SWP) sp|Q9FY75|POT7_ARATH (e_value=0.0) Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2;; (*TAIR) AT5G09400.1 (e_value=0.0) | Symbols: KUP7 | K+ uptake permease 7 | chr5:2916377-2920604 FORWARD LENGTH=858;; (*ITAG) Solyc01g105150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85183433-85193710 transcript_region:SL2.40ch01:85183433..85193710+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0016020 NbS00020345g0007.1 protein AED:0.19 eAED:0.21 QI:0|0.25|0|1|1|0.8|5|0|525; (*GB) gi|224068368|ref|XP_002302726.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXK7|PME41_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2;; (*TAIR) AT4G02330.1 (e_value=0.0) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573;; (*ITAG) Solyc06g009180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3114053-3119562 transcript_region:SL2.40ch06:3114053..3119562- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00020345g0006.1 protein AED:0.11 eAED:0.11 QI:135|1|1|1|0.66|0.5|4|311|318; (*GB) gi|359479970|ref|XP_003632381.1| (e_value=1e-175) PREDICTED: epoxide hydrolase 2-like [Vitis vinifera];; (*SWP) sp|P34913|HYES_HUMAN (e_value=9e-49) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT4G02340.1 (e_value=5e-166) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc06g009170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3108490-3113302 transcript_region:SL2.40ch06:3108490..3113302+ go_terms:GO:0004301 functional_description:"Epoxide hydrolase 1 (AHRD V1 **** D8L7V7_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00010493g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|297739902|emb|CBI30084.3| (e_value=6e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=9e-14) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G50140.1 (e_value=2e-27) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18592472-18594562 REVERSE LENGTH=539;; (*ITAG) Solyc10g079520.1.1 (e_value=7e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60380417-60382000 transcript_region:SL2.40ch10:60380417..60382000+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00010493g0002.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|224137748|ref|XP_002322640.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50170.2 (e_value=4e-17) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18602337-18603738 REVERSE LENGTH=427;; (*ITAG) Solyc10g079520.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60380417-60382000 transcript_region:SL2.40ch10:60380417..60382000+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00010493g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|472; (*GB) gi|359482223|ref|XP_003632735.1| (e_value=2e-113) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=7e-44) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT3G57070.1 (e_value=1e-92) | Symbols: | Glutaredoxin family protein | chr3:21124174-21125427 FORWARD LENGTH=417;; (*ITAG) Solyc10g079560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60395656-60396960 transcript_region:SL2.40ch10:60395656..60396960- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LH54_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00010493g0007.1 protein AED:0.08 eAED:0.08 QI:120|1|1|1|0.5|0.33|3|264|200; (*GB) gi|225438281|ref|XP_002269083.1| (e_value=6e-75) PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera];; (*TAIR) AT1G05970.2 (e_value=2e-61) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:1816253-1816991 REVERSE LENGTH=200;; (*ITAG) Solyc10g079580.1.1 (e_value=9e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60410739-60411670 transcript_region:SL2.40ch10:60410739..60411670- go_terms:GO:0003676 functional_description:"RNA-binding region RNP-1 (AHRD V1 ***- B6TT30_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00048193g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|384|321; (*GB) gi|255537577|ref|XP_002509855.1| (e_value=2e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G63930.1 (e_value=4e-108) | Symbols: ROH1 | from the Czech 'roh' meaning 'corner' | chr1:23727927-23729174 FORWARD LENGTH=415;; (*ITAG) Solyc08g081520.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61719986-61721203 transcript_region:SL2.40ch08:61719986..61721203+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00008834g0111.1 protein AED:0.11 eAED:0.11 QI:0|0.28|0.37|0.87|0.57|0.5|8|0|702 NbS00008834g0103.1 protein AED:0.20 eAED:0.20 QI:269|0.83|1|1|0.83|0.71|7|367|207 NbS00004891g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|229914874|gb|ACQ90599.1| (e_value=5e-43) putative NADH dehydrogenase [Eutrema halophilum];; (*SWP) sp|Q9SKC9|NDUB7_ARATH (e_value=1e-40) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=2 SV=1;; (*TAIR) AT2G02050.1 (e_value=7e-42) | Symbols: | NADH-ubiquinone oxidoreductase B18 subunit, putative | chr2:490024-490335 FORWARD LENGTH=103;; (*ITAG) Solyc04g008490.1.1 (e_value=3e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2117997-2118299 transcript_region:SL2.40ch04:2117997..2118299- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB7_DICDI); contains Interpro domain(s) IPR008698 NADH:ubiquinone oxidoreductase, B18 subunit "; GO:0008137 NbS00021261g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.4|0.8|1|1|5|0|207; (*GB) gi|28192427|gb|AAL71857.1| (e_value=5e-126) dehydroascorbate reductase [Nicotiana tabacum];; (*SWP) sp|Q9FRL8|DHAR2_ARATH (e_value=2e-103) Glutathione S-transferase DHAR2 OS=Arabidopsis thaliana GN=DHAR2 PE=1 SV=1;; (*TAIR) AT1G75270.1 (e_value=2e-104) | Symbols: DHAR2 | dehydroascorbate reductase 2 | chr1:28250255-28251237 REVERSE LENGTH=213;; (*ITAG) Solyc05g054760.2.1 (e_value=4e-120) genomic_reference:SL2.40ch05 gene_region:63753656-63758079 transcript_region:SL2.40ch05:63753656..63758079- go_terms:GO:0045174 functional_description:"Dehydroascorbate reductase (Fragment) (AHRD V1 ***- Q1G0W3_SOLLC); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0045174 NbS00054766g0007.1 protein AED:0.15 eAED:0.15 QI:39|0.71|0.75|1|0.71|0.87|8|517|626; (*GB) gi|225435251|ref|XP_002284945.1| (e_value=0.0) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=0.0) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.1 (e_value=0.0) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300671 FORWARD LENGTH=873;; (*ITAG) Solyc11g069160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00054766g0008.1 protein AED:0.40 eAED:0.40 QI:122|0.66|0.57|0.85|0.16|0.42|7|0|129; (*GB) gi|225435251|ref|XP_002284945.1| (e_value=9e-60) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=3e-48) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.3 (e_value=1e-49) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300300 FORWARD LENGTH=832;; (*ITAG) Solyc11g069160.1.1 (e_value=4e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00013804g0001.1 protein AED:0.23 eAED:0.69 QI:0|0|0|1|0|0|2|0|95 NbS00003165g0009.1 protein AED:0.16 eAED:0.16 QI:33|1|0.5|1|0|0|2|56|32 NbS00003165g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|334; (*GB) gi|225437840|ref|XP_002263238.1| (e_value=6e-151) PREDICTED: deoxyhypusine hydroxylase [Vitis vinifera];; (*SWP) sp|Q94JW0|DOHH_ARATH (e_value=3e-145) Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=2 SV=1;; (*TAIR) AT3G58180.1 (e_value=3e-146) | Symbols: | ARM repeat superfamily protein | chr3:21544189-21545981 FORWARD LENGTH=314;; (*ITAG) Solyc08g077830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58906173-58907177 transcript_region:SL2.40ch08:58906173..58907177+ go_terms:GO:0005515,GO:0019135 functional_description:"Deoxyhypusine hydroxylase (AHRD V1 **** D8THC0_VOLCA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0019135 NbS00003165g0011.1 protein AED:0.34 eAED:0.49 QI:70|0.5|0.2|1|0.75|0.8|5|0|263; (*GB) gi|255566751|ref|XP_002524359.1| (e_value=8e-38) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G17610.1 (e_value=7e-30) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=6e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00003165g0010.1 protein AED:0.12 eAED:0.13 QI:0|0.8|0.81|1|0.8|0.90|11|120|320; (*GB) gi|22328740|ref|NP_193438.2| (e_value=2e-142) ureidoglycine aminohydrolase [Arabidopsis thaliana];; (*SWP) sp|P75713|YLBA_ECOLI (e_value=2e-18) Uncharacterized protein ylbA OS=Escherichia coli (strain K12) GN=ylbA PE=1 SV=1;; (*TAIR) AT4G17050.1 (e_value=4e-145) | Symbols: UGLYAH | ureidoglycine aminohydrolase | chr4:9589662-9592413 FORWARD LENGTH=298;; (*ITAG) Solyc08g077840.2.1 (e_value=4e-165) genomic_reference:SL2.40ch08 gene_region:58907756-58913287 transcript_region:SL2.40ch08:58907756..58913287- go_terms:GO:0003700 functional_description:"Cupin 2 conserved barrel domain protein (AHRD V1 **-- D7BFW1_MEISD); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0003700 NbS00056528g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.8|0.66|6|304|277; (*GB) gi|224053394|ref|XP_002297797.1| (e_value=3e-140) aquaporin, MIP family, NIP subfamily [Populus trichocarpa];; (*SWP) sp|Q9SAI4|NIP61_ARATH (e_value=8e-124) Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1;; (*TAIR) AT1G80760.1 (e_value=6e-125) | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsic protein 6;1 | chr1:30350640-30352015 REVERSE LENGTH=305;; (*ITAG) Solyc03g117050.2.1 (e_value=3e-161) genomic_reference:SL2.40ch03 gene_region:60369198-60372337 transcript_region:SL2.40ch03:60369198..60372337+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00056528g0009.1 protein AED:0.09 eAED:1.00 QI:64|1|0|1|0|0|2|122|37 NbS00056528g0010.1 protein AED:0.29 eAED:0.41 QI:0|0.42|0.37|0.87|0.57|0.5|8|784|431; (*GB) gi|83283989|gb|ABC01902.1| (e_value=6e-119) putative 60S ribosomal protein L7-like protein [Solanum tuberosum];; (*SWP) sp|Q9SAI5|RL71_ARATH (e_value=2e-57) 60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1;; (*TAIR) AT1G80750.1 (e_value=2e-58) | Symbols: | Ribosomal protein L30/L7 family protein | chr1:30349052-30350434 FORWARD LENGTH=247;; (*ITAG) Solyc03g117060.2.1 (e_value=4e-126) genomic_reference:SL2.40ch03 gene_region:60374016-60378796 transcript_region:SL2.40ch03:60374016..60378796- go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0042803 NbS00050236g0008.1 protein AED:0.34 eAED:0.36 QI:0|0.8|0.5|1|0|0|6|0|333; (*GB) gi|359482294|ref|XP_002284087.2| (e_value=5e-177) PREDICTED: GDSL esterase/lipase At5g03820-like [Vitis vinifera];; (*SWP) sp|Q9FFN0|GDL72_ARATH (e_value=6e-153) GDSL esterase/lipase At5g03810 OS=Arabidopsis thaliana GN=At5g03810 PE=3 SV=1;; (*TAIR) AT5G03810.1 (e_value=4e-154) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr5:1013939-1015345 REVERSE LENGTH=353;; (*ITAG) Solyc10g085740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64141402-64143991 transcript_region:SL2.40ch10:64141402..64143991- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g03820 (AHRD V1 ***- GDL73_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00050236g0009.1 protein AED:0.11 eAED:0.16 QI:235|0.6|0.5|1|0.2|0.5|16|0|1112; (*GB) gi|225441066|ref|XP_002284049.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL7 [Vitis vinifera];; (*SWP) sp|Q9SCQ2|UPL7_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1;; (*TAIR) AT3G53090.2 (e_value=0.0) | Symbols: UPL7 | ubiquitin-protein ligase 7 | chr3:19679273-19684453 FORWARD LENGTH=1142;; (*ITAG) Solyc09g008700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2135770-2147539 transcript_region:SL2.40ch09:2135770..2147539- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 7 (AHRD V1 **** D7LUE6_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00006290g0014.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|260; (*GB) gi|81074776|gb|ABB55374.1| (e_value=4e-174) ribosomal protein L2-like [Solanum tuberosum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=2e-175) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=5e-168) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc10g006580.2.1 (e_value=9e-177) genomic_reference:SL2.40ch10 gene_region:1125825-1127897 transcript_region:SL2.40ch10:1125825..1127897- go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00006290g0015.1 protein AED:0.01 eAED:0.01 QI:512|1|1|1|1|1|2|128|126; (*ITAG) Solyc10g006570.2.1 (e_value=3e-22) genomic_reference:SL2.40ch10 gene_region:1122047-1123659 transcript_region:SL2.40ch10:1122047..1123659- functional_description:"Unknown Protein (AHRD V1)"; NbS00006290g0012.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|73; (*GB) gi|356543960|ref|XP_003540426.1| (e_value=3e-29) PREDICTED: protein H2A.7-like [Glycine max];; (*SWP) sp|O81826|H2A3_ARATH (e_value=1e-30) Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1;; (*TAIR) AT4G27230.2 (e_value=9e-32) | Symbols: HTA2 | histone H2A 2 | chr4:13637515-13638325 REVERSE LENGTH=131;; (*ITAG) Solyc12g005270.1.1 (e_value=7e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00006290g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27496|CB25_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=8e-174) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00006290g0016.1 protein AED:0.34 eAED:0.44 QI:0|0.66|0.75|1|1|1|4|240|217; (*GB) gi|400989|sp|Q02764.1|RK24_TOBAC (e_value=7e-76) RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor;; (*SWP) sp|Q02764|RK24_TOBAC (e_value=2e-77) 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1;; (*TAIR) AT5G54600.1 (e_value=8e-66) | Symbols: | Translation protein SH3-like family protein | chr5:22183046-22184403 FORWARD LENGTH=198;; (*ITAG) Solyc07g063960.2.1 (e_value=2e-78) genomic_reference:SL2.40ch07 gene_region:63515688-63518536 transcript_region:SL2.40ch07:63515688..63518536+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- B4FTJ3_MAIZE); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005840 NbS00006290g0022.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.42|1|0.66|0.71|7|0|970; (*GB) gi|224117388|ref|XP_002317562.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=0.0) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=0.0) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc10g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1102758-1109122 transcript_region:SL2.40ch10:1102758..1109122+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00005926g0001.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|116; (*ITAG) Solyc06g009920.1.1 (e_value=4e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:4341939-4342262 transcript_region:SL2.40ch06:4341939..4342262+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005874g0019.1 protein AED:0.17 eAED:0.17 QI:340|1|0.87|1|0.42|0.37|8|98|322; (*GB) gi|147779655|emb|CAN67215.1| (e_value=2e-88) hypothetical protein VITISV_005839 [Vitis vinifera];; (*SWP) sp|Q9FXT6|PEX14_ARATH (e_value=4e-77) Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2;; (*TAIR) AT5G62810.1 (e_value=3e-78) | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220323-25223571 FORWARD LENGTH=507;; (*ITAG) Solyc06g071470.2.1 (e_value=2e-147) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00005874g0016.1 protein AED:0.31 eAED:0.31 QI:201|0.77|0.7|0.9|1|1|10|0|318; (*GB) gi|255540693|ref|XP_002511411.1| (e_value=1e-169) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GYT9|SIS3_ARATH (e_value=4e-139) E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2;; (*TAIR) AT3G47990.1 (e_value=3e-140) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358;; (*ITAG) Solyc06g071420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40330071-40335137 transcript_region:SL2.40ch06:40330071..40335137+ go_terms:GO:0004842 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00005874g0024.1 protein AED:0.33 eAED:0.33 QI:362|0.85|0.87|1|0.85|0.87|8|0|215; (*GB) gi|225457023|ref|XP_002282635.1| (e_value=2e-122) PREDICTED: putative exosome complex component rrp40 [Vitis vinifera];; (*SWP) sp|Q7KWX9|EXOS3_DICDI (e_value=9e-47) Putative exosome complex component rrp40 OS=Dictyostelium discoideum GN=exosc3 PE=3 SV=1;; (*TAIR) AT4G32175.1 (e_value=5e-109) | Symbols: | PNAS-3 related | chr4:15535555-15537537 FORWARD LENGTH=241;; (*ITAG) Solyc06g071460.2.1 (e_value=2e-132) genomic_reference:SL2.40ch06 gene_region:40355335-40359897 transcript_region:SL2.40ch06:40355335..40359897+ go_terms:GO:0005515 functional_description:"Exosome complex exonuclease RRP40 (AHRD V1 ***- B6TDY7_MAIZE)"; GO:0005515 NbS00005874g0007.1 protein AED:0.48 eAED:0.62 QI:0|0.57|0.5|0.75|1|1|8|0|333; (*GB) gi|255540691|ref|XP_002511410.1| (e_value=5e-61) EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=1e-24) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1;; (*TAIR) AT1G27510.1 (e_value=4e-46) | Symbols: | Protein of unknown function (DUF3506) | chr1:9554945-9558293 REVERSE LENGTH=651;; (*ITAG) Solyc06g071430.2.1 (e_value=2e-85) genomic_reference:SL2.40ch06 gene_region:40335709-40344949 transcript_region:SL2.40ch06:40335709..40344949+ functional_description:"T17H3.1 protein (Fragment) (AHRD V1 ***- Q9SXD0_ARATH)"; NbS00005874g0020.1 protein AED:0.16 eAED:0.17 QI:4|0.33|0.75|1|0.66|0.75|4|668|106; (*GB) gi|225459534|ref|XP_002284465.1| (e_value=3e-33) PREDICTED: general transcription factor IIH subunit 3 [Vitis vinifera];; (*SWP) sp|Q86IB5|TF2H3_DICDI (e_value=3e-17) General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1;; (*TAIR) AT1G18340.1 (e_value=7e-35) | Symbols: | basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301;; (*ITAG) Solyc06g071450.2.1 (e_value=8e-37) genomic_reference:SL2.40ch06 gene_region:40349161-40354500 transcript_region:SL2.40ch06:40349161..40354500- go_terms:GO:0016251,GO:0008353 functional_description:"RNA polymerase II transcription factor B subunit 4 (AHRD V1 **** B6K6N1_SCHJY); contains Interpro domain(s) IPR004600 Transcription factor Tfb4 "; GO:0016251,GO:0008353 NbS00005874g0027.1 protein AED:0.26 eAED:0.31 QI:0|0.75|0.66|0.88|0.75|0.77|9|0|235; (*GB) gi|225459534|ref|XP_002284465.1| (e_value=2e-92) PREDICTED: general transcription factor IIH subunit 3 [Vitis vinifera];; (*SWP) sp|Q86IB5|TF2H3_DICDI (e_value=6e-24) General transcription factor IIH subunit 3 OS=Dictyostelium discoideum GN=gtf2h3 PE=3 SV=1;; (*TAIR) AT1G18340.1 (e_value=2e-74) | Symbols: | basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301;; (*ITAG) Solyc06g071450.2.1 (e_value=3e-126) genomic_reference:SL2.40ch06 gene_region:40349161-40354500 transcript_region:SL2.40ch06:40349161..40354500- go_terms:GO:0016251,GO:0008353 functional_description:"RNA polymerase II transcription factor B subunit 4 (AHRD V1 **** B6K6N1_SCHJY); contains Interpro domain(s) IPR004600 Transcription factor Tfb4 "; GO:0016251,GO:0008353 NbS00006319g0004.1 protein AED:0.05 eAED:0.05 QI:285|0.88|0.8|1|0.88|0.8|10|0|406; (*GB) gi|356543847|ref|XP_003540371.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 2-like [Glycine max];; (*SWP) sp|P98205|ALA2_ARATH (e_value=0.0) Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1;; (*TAIR) AT5G44240.2 (e_value=0.0) | Symbols: ALA2 | aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107;; (*ITAG) Solyc11g017170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7954305-7991478 transcript_region:SL2.40ch11:7954305..7991478+ go_terms:GO:0005576,GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium transporting ATPase (AHRD V1 ***- A8N6A2_COPC7); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0005576,GO:0016020,GO:0008152,GO:0016021 NbS00007728g0025.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0|0|3|0|354; (*GB) gi|225436827|ref|XP_002270748.1| (e_value=0.0) PREDICTED: NPL4-like protein 2 [Vitis vinifera];; (*SWP) sp|O82264|NPL42_ARATH (e_value=9e-177) NPL4-like protein 2 OS=Arabidopsis thaliana GN=At2g47970 PE=1 SV=1;; (*TAIR) AT2G47970.1 (e_value=7e-178) | Symbols: | Nuclear pore localisation protein NPL4 | chr2:19629525-19630973 FORWARD LENGTH=413;; (*ITAG) Solyc06g084440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45835298-45839256 transcript_region:SL2.40ch06:45835298..45839256- functional_description:"Nuclear protein localization 4 (AHRD V1 ***- D3B583_POLPA); contains Interpro domain(s) IPR007717 NPL4 "; NbS00007728g0023.1 protein AED:0.16 eAED:0.16 QI:197|1|1|1|0.88|0.8|10|213|515; (*GB) gi|255559348|ref|XP_002520694.1| (e_value=0.0) shikimate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=3e-138) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=2e-139) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc06g084460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45845253-45849103 transcript_region:SL2.40ch06:45845253..45849103- go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR011342 Quinate/shikimate 5-dehydrogenase "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00007728g0024.1 protein AED:0.32 eAED:0.33 QI:107|0.88|0.7|1|1|1|10|0|443; (*GB) gi|225436819|ref|XP_002270390.1| (e_value=0.0) PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis vinifera];; (*SWP) sp|A0JM51|CELF5_XENTR (e_value=1e-79) CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2 SV=1;; (*TAIR) AT4G03110.1 (e_value=5e-170) | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441;; (*ITAG) Solyc09g074360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61655003-61662278 transcript_region:SL2.40ch09:61655003..61662278- go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"RNA binding protein (AHRD V1 **-- B6UFA0_MAIZE); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003676,GO:0003723,GO:0000166 NbS00007728g0006.1 protein AED:0.38 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|156; (*ITAG) Solyc09g074350.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61646409-61646918 transcript_region:SL2.40ch09:61646409..61646918- functional_description:"Unknown Protein (AHRD V1)"; NbS00007728g0022.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|1|0.5|2|0|265; (*GB) gi|118484640|gb|ABK94192.1| (e_value=1e-128) unknown [Populus trichocarpa];; (*SWP) sp|P50160|TS2_MAIZE (e_value=1e-59) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT4G03140.1 (e_value=9e-117) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:1392191-1393662 FORWARD LENGTH=343;; (*ITAG) Solyc09g074410.2.1 (e_value=4e-143) genomic_reference:SL2.40ch09 gene_region:61708159-61710983 transcript_region:SL2.40ch09:61708159..61710983+ go_terms:GO:0043621,GO:0005507 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7LR91_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621,GO:0005507 NbS00006958g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|1|1|5|0|487; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=0.0) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZSS6|THD1_ARATH (e_value=0.0) Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=0.0) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00021844g0002.1 protein AED:0.09 eAED:0.09 QI:754|0.66|1|1|0.33|0.25|4|306|125; (*GB) gi|225456920|ref|XP_002278063.1| (e_value=1e-13) PREDICTED: transcription factor MYB39 [Vitis vinifera];; (*ITAG) Solyc06g071690.2.1 (e_value=5e-25) genomic_reference:SL2.40ch06 gene_region:40550761-40552362 transcript_region:SL2.40ch06:40550761..40552362+ go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 *--* D6BV29_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00021844g0009.1 protein AED:0.08 eAED:0.10 QI:0|0.46|0.28|1|0.38|0.5|14|0|760; (*GB) gi|134048908|dbj|BAF49520.1| (e_value=0.0) N-methylputrescine oxidase [Nicotiana tabacum];; (*SWP) sp|Q07123|AMO2_ARTS1 (e_value=4e-114) Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc06g071700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40552823-40558827 transcript_region:SL2.40ch06:40552823..40558827- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00029952g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.7|0.63|1|0.5|0.63|11|492|649; (*GB) gi|118489987|gb|ABK96790.1| (e_value=0.0) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q9FT74|RQL1_ARATH (e_value=0.0) ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana GN=RECQL1 PE=2 SV=1;; (*TAIR) AT3G05740.1 (e_value=0.0) | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-1701228 FORWARD LENGTH=606;; (*ITAG) Solyc01g100280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82113424-82119096 transcript_region:SL2.40ch01:82113424..82119096+ go_terms:GO:0004003 functional_description:"ATP-DEPENDENT DNA HELICASE (AHRD V1 *-** Q8SRI7_ENCCU); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0004003 NbS00021120g0011.1 protein AED:0.28 eAED:0.37 QI:0|0.33|0.25|1|0.33|0.25|4|0|185; (*GB) gi|225425414|ref|XP_002277728.1| (e_value=1e-52) PREDICTED: uncharacterized protein LOC100248862 [Vitis vinifera];; (*TAIR) AT1G27385.1 (e_value=1e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:9511129-9512820 REVERSE LENGTH=202;; (*ITAG) Solyc04g045580.2.1 (e_value=5e-69) genomic_reference:SL2.40ch04 gene_region:33219502-33220709 transcript_region:SL2.40ch04:33219502..33220709- functional_description:"Os04g0386500 protein (Fragment) (AHRD V1 ***- Q0JDQ2_ORYSJ); contains Interpro domain(s) IPR007454 Protein of unknown function DUF493 "; NbS00021120g0010.1 protein AED:0.10 eAED:0.10 QI:1156|1|1|1|1|1|2|360|141; (*GB) gi|255547696|ref|XP_002514905.1| (e_value=8e-12) LIGULELESS1 protein, putative [Ricinus communis];; (*ITAG) Solyc04g045560.2.1 (e_value=2e-40) genomic_reference:SL2.40ch04 gene_region:33188973-33194461 transcript_region:SL2.40ch04:33188973..33194461+ go_terms:GO:0005634 functional_description:"Squamosa promoter-binding-like protein 11 (AHRD V1 *-*- B6TF72_MAIZE); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00028575g0002.1 protein AED:0.08 eAED:0.10 QI:0|0.25|0|1|1|1|5|0|476; (*GB) gi|225457743|ref|XP_002278065.1| (e_value=0.0) PREDICTED: endoglucanase 10-like [Vitis vinifera];; (*SWP) sp|Q7XUK4|GUN12_ORYSJ (e_value=1e-110) Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2;; (*TAIR) AT1G65610.1 (e_value=9e-108) | Symbols: ATGH9A2, KOR2 | Six-hairpin glycosidases superfamily protein | chr1:24391823-24395261 REVERSE LENGTH=623;; (*ITAG) Solyc11g008820.1.1 (e_value=4e-112) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3003590-3009749 transcript_region:SL2.40ch11:3003590..3009749- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- Q0KIX2_CUCME); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00028575g0001.1 protein AED:0.39 eAED:0.65 QI:0|0|0|1|1|1|2|0|69; (*GB) gi|224082406|ref|XP_002306682.1| (e_value=4e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g064870.2.1 (e_value=3e-28) genomic_reference:SL2.40ch04 gene_region:55151560-55153322 transcript_region:SL2.40ch04:55151560..55153322+ functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbS00028575g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.33|0.66|1|1|6|55|221; (*GB) gi|359492319|ref|XP_002278042.2| (e_value=5e-76) PREDICTED: pleckstrin homology domain-containing family A member 8-like [Vitis vinifera];; (*SWP) sp|O95397|PKHA9_HUMAN (e_value=8e-14) Putative protein PLEKHA9 OS=Homo sapiens GN=PLEKHA8P1 PE=5 SV=1;; (*TAIR) AT1G21360.1 (e_value=8e-62) | Symbols: GLTP2 | glycolipid transfer protein 2 | chr1:7481365-7483237 FORWARD LENGTH=223;; (*ITAG) Solyc04g064920.2.1 (e_value=3e-98) genomic_reference:SL2.40ch04 gene_region:55165701-55168720 transcript_region:SL2.40ch04:55165701..55168720- go_terms:GO:0051861,GO:0017089 functional_description:"Pleckstrin homology domain containing family A member 8 (AHRD V1 **-- D2KC46_CANFA); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0051861,GO:0017089 NbS00028575g0006.1 protein AED:0.49 eAED:0.66 QI:0|0|0|0.5|1|1|6|0|133; (*GB) gi|225458489|ref|XP_002284120.1| (e_value=3e-19) PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|O04348|TPP1_ARATH (e_value=1e-16) Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2;; (*TAIR) AT2G30440.1 (e_value=8e-18) | Symbols: TPP | thylakoid processing peptide | chr2:12973244-12975027 FORWARD LENGTH=340;; (*ITAG) Solyc04g079550.2.1 (e_value=3e-21) genomic_reference:SL2.40ch04 gene_region:61565562-61568797 transcript_region:SL2.40ch04:61565562..61568797- go_terms:GO:0004175 functional_description:"Signal peptidase I (AHRD V1 *-*- B4W1T4_9CYAN); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004175 NbS00028575g0011.1 protein AED:0.28 eAED:0.46 QI:0|0|0|1|0|0|3|0|125; (*GB) gi|224082406|ref|XP_002306682.1| (e_value=1e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|P16273|PRPX_HORVU (e_value=4e-18) Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2;; (*TAIR) AT1G78780.2 (e_value=2e-16) | Symbols: | pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=238;; (*ITAG) Solyc04g064870.2.1 (e_value=8e-32) genomic_reference:SL2.40ch04 gene_region:55151560-55153322 transcript_region:SL2.40ch04:55151560..55153322+ functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbS00060557g0001.1 protein AED:0.16 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|224142453|ref|XP_002324572.1| (e_value=2e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=4e-13) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT2G15580.1 (e_value=5e-27) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196;; (*ITAG) Solyc07g007160.2.1 (e_value=3e-55) genomic_reference:SL2.40ch07 gene_region:1919123-1921221 transcript_region:SL2.40ch07:1919123..1921221- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q8LJR8_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030773g0015.1 protein AED:0.15 eAED:0.15 QI:97|1|0.85|1|1|1|7|0|372; (*GB) gi|225450508|ref|XP_002277072.1| (e_value=5e-156) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-66) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=1e-156) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g100880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82536275-82538541 transcript_region:SL2.40ch01:82536275..82538541- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00030773g0022.1 protein AED:0.07 eAED:0.07 QI:207|1|1|1|0.78|0.85|20|263|989; (*GB) gi|225450585|ref|XP_002282109.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264846 [Vitis vinifera];; (*TAIR) AT5G26850.4 (e_value=0.0) | Symbols: | Uncharacterized protein | chr5:9445950-9450584 FORWARD LENGTH=983;; (*ITAG) Solyc01g100530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82294669-82305344 transcript_region:SL2.40ch01:82294669..82305344- go_terms:GO:0005488 functional_description:"Protein EFR3 homolog A (AHRD V1 *--- EFR3A_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00030773g0020.1 protein AED:0.18 eAED:0.29 QI:0|0|0|1|0|0.5|2|0|132 NbS00003929g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.28|0.57|0.83|0.85|7|0|180; (*GB) gi|302762907|ref|XP_002964875.1| (e_value=2e-26) hypothetical protein SELMODRAFT_83492 [Selaginella moellendorffii];; (*SWP) sp|Q63184|E2AK2_RAT (e_value=5e-26) Interferon-induced, double-stranded RNA-activated protein kinase OS=Rattus norvegicus GN=Eif2ak2 PE=1 SV=1;; (*TAIR) AT3G59410.2 (e_value=2e-26) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1265; NbS00005994g0004.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|0.25|0.4|5|0|354; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=2e-29) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-21) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*ITAG) Solyc04g072200.1.1 (e_value=7e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56792510-56794669 transcript_region:SL2.40ch04:56792510..56794669+ functional_description:"FRIGIDA (AHRD V1 *-*- B0Z0D2_ARALY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00031719g0007.1 protein AED:0.35 eAED:0.35 QI:86|0.77|0.7|0.9|0.77|0.8|10|0|313; (*GB) gi|296082378|emb|CBI21383.3| (e_value=6e-124) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VC52|RBPS2_MOUSE (e_value=3e-18) RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1;; (*TAIR) AT2G42240.2 (e_value=1e-106) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17596844-17598911 FORWARD LENGTH=302;; (*ITAG) Solyc02g093120.2.1 (e_value=6e-109) genomic_reference:SL2.40ch02 gene_region:48623523-48626914 transcript_region:SL2.40ch02:48623523..48626914+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- B2VRY0_PYRTR); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00052699g0004.1 protein AED:0.07 eAED:0.07 QI:6|1|1|1|0|0.33|3|100|285; (*GB) gi|224084854|ref|XP_002307423.1| (e_value=1e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|P28493|PR5_ARATH (e_value=4e-78) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT1G77700.1 (e_value=3e-131) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:29204747-29206217 FORWARD LENGTH=356;; (*ITAG) Solyc11g013300.1.1 (e_value=2e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6250399-6253767 transcript_region:SL2.40ch11:6250399..6253767- functional_description:"Thaumatin-like protein 12104-13574 (AHRD V1 **-- Q9CA24_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00033142g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|204; (*ITAG) Solyc01g010190.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:4983955-4984873 transcript_region:SL2.40ch01:4983955..4984873+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008515g0009.1 protein AED:0.31 eAED:0.31 QI:199|1|1|1|0.8|0.66|6|443|112; (*GB) gi|350538313|ref|NP_001233825.1| (e_value=2e-71) CONSTANS interacting protein 3 [Solanum lycopersicum];; (*SWP) sp|O04287|FKB12_VICFA (e_value=4e-63) Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1;; (*TAIR) AT5G64350.1 (e_value=4e-63) | Symbols: FKBP12, ATFKBP12 | FK506-binding protein 12 | chr5:25734810-25735990 REVERSE LENGTH=112;; (*ITAG) Solyc01g105710.2.1 (e_value=4e-74) genomic_reference:SL2.40ch01 gene_region:85539000-85541482 transcript_region:SL2.40ch01:85539000..85541482- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- A6RSK7_BOTFB); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00008515g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|86 NbS00008515g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|354; (*GB) gi|359492482|ref|XP_002283891.2| (e_value=6e-80) PREDICTED: uncharacterized protein LOC100247170 [Vitis vinifera];; (*TAIR) AT1G58120.1 (e_value=2e-57) | Symbols: | BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420;; (*ITAG) Solyc01g105720.2.1 (e_value=2e-172) genomic_reference:SL2.40ch01 gene_region:85547901-85549804 transcript_region:SL2.40ch01:85547901..85549804+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011134g0006.1 protein AED:0.08 eAED:0.08 QI:526|0.77|0.6|1|0.66|0.6|10|542|719; (*GB) gi|225465856|ref|XP_002265532.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 6-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFB8|PI5K6_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1;; (*TAIR) AT3G07960.1 (e_value=0.0) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:2535274-2538090 FORWARD LENGTH=715;; (*ITAG) Solyc01g096410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79270399-79274213 transcript_region:SL2.40ch01:79270399..79274213- go_terms:GO:0006508,GO:0046488,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0006508,GO:0046488,GO:0016308 NbS00011134g0103.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|325 NbS00011134g0112.1 protein AED:0.10 eAED:0.11 QI:211|0.84|0.8|1|0.84|0.9|20|572|2042 NbS00011134g0111.1 protein AED:0.16 eAED:0.13 QI:85|1|0.83|1|0.8|0.83|6|819|306 NbS00004909g0013.1 protein AED:0.06 eAED:0.06 QI:1001|0.5|0.8|0.8|0.5|0.8|5|258|451; (*GB) gi|385139883|gb|AFI41914.1| (e_value=0.0) glycosyltransferase family 14 protein [Betula platyphylla];; (*SWP) sp|Q9EPI1|XYLT1_RAT (e_value=1e-21) Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1;; (*TAIR) AT1G03520.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:877948-879553 REVERSE LENGTH=447;; (*ITAG) Solyc07g054440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60072438-60079579 transcript_region:SL2.40ch07:60072438..60079579- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00004909g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|677; (*GB) gi|225447256|ref|XP_002272957.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100246486 [Vitis vinifera];; (*ITAG) Solyc07g054410.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60054874-60057307 transcript_region:SL2.40ch07:60054874..60057307- functional_description:"Unknown Protein (AHRD V1)"; NbS00004909g0014.1 protein AED:0.00 eAED:0.00 QI:178|1|1|1|1|1|2|128|299; (*GB) gi|255553875|ref|XP_002517978.1| (e_value=8e-171) formiminotransferase-cyclodeaminase, putative [Ricinus communis];; (*SWP) sp|Q91XD4|FTCD_MOUSE (e_value=9e-16) Formimidoyltransferase-cyclodeaminase OS=Mus musculus GN=Ftcd PE=1 SV=1;; (*TAIR) AT2G20830.1 (e_value=3e-108) | Symbols: | transferases;folic acid binding | chr2:8968370-8969798 REVERSE LENGTH=297;; (*ITAG) Solyc07g054430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60069440-60072054 transcript_region:SL2.40ch07:60069440..60072054+ go_terms:GO:0030412,GO:0030409 functional_description:"Glutamate formiminotransferase (AHRD V1 **** B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0030412,GO:0030409 NbS00004909g0015.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|217|297; (*GB) gi|224126757|ref|XP_002319919.1| (e_value=6e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|P53603|FTCD_PIG (e_value=6e-15) Formimidoyltransferase-cyclodeaminase OS=Sus scrofa GN=FTCD PE=1 SV=1;; (*TAIR) AT2G20830.1 (e_value=6e-130) | Symbols: | transferases;folic acid binding | chr2:8968370-8969798 REVERSE LENGTH=297;; (*ITAG) Solyc07g054420.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60058632-60065064 transcript_region:SL2.40ch07:60058632..60065064+ go_terms:GO:0008152 functional_description:"Glutamate formiminotransferase (AHRD V1 ***- B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0008152 NbS00004909g0020.1 protein AED:0.11 eAED:0.24 QI:0|0.75|0.4|0.8|1|1|5|0|514; (*GB) gi|225447264|ref|XP_002273081.1| (e_value=7e-97) PREDICTED: uncharacterized protein LOC100253339 [Vitis vinifera];; (*TAIR) AT2G20815.2 (e_value=2e-49) | Symbols: QWRF3 | Family of unknown function (DUF566) | chr2:8959988-8961917 FORWARD LENGTH=454;; (*ITAG) Solyc07g054390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60046650-60048736 transcript_region:SL2.40ch07:60046650..60048736+ functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *--- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00021256g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|249; (*GB) gi|224135975|ref|XP_002327350.1| (e_value=1e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|Q75VW3|DNAJ_HYDTT (e_value=9e-14) Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1;; (*TAIR) AT4G09350.1 (e_value=2e-87) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:5931317-5932152 REVERSE LENGTH=249;; (*ITAG) Solyc09g074610.2.1 (e_value=6e-143) genomic_reference:SL2.40ch09 gene_region:61937141-61938371 transcript_region:SL2.40ch09:61937141..61938371+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- B7GKC9_ANOFW); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00021256g0007.1 protein AED:0.00 eAED:0.00 QI:186|1|1|1|1|1|2|403|83; (*GB) gi|225436767|ref|XP_002267360.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100240880 [Vitis vinifera];; (*TAIR) AT3G62920.1 (e_value=3e-28) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23260717-23261171 FORWARD LENGTH=80;; (*ITAG) Solyc09g074620.2.1 (e_value=7e-47) genomic_reference:SL2.40ch09 gene_region:61937997-61940486 transcript_region:SL2.40ch09:61937997..61940486- functional_description:"Unknown Protein (AHRD V1)"; NbS00002130g0003.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|1|1|2|0|154; (*GB) gi|225453979|ref|XP_002280387.1| (e_value=8e-35) PREDICTED: uncharacterized protein LOC100260776 [Vitis vinifera];; (*TAIR) AT3G60690.1 (e_value=9e-30) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc01g091030.2.1 (e_value=5e-58) genomic_reference:SL2.40ch01 gene_region:76507949-76509039 transcript_region:SL2.40ch01:76507949..76509039+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LRT5_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00002130g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=1e-41) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=3e-30) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G47380.1 (e_value=2e-31) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr3:17457795-17458403 FORWARD LENGTH=202;; (*ITAG) Solyc10g018330.1.1 (e_value=2e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7345858-7346529 transcript_region:SL2.40ch10:7345858..7346529+ go_terms:GO:0046910 functional_description:"Pectinesterase/pectinesterase inhibitor 3 (AHRD V1 **-* PME3_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00004833g0011.1 protein AED:0.54 eAED:0.89 QI:26|0|0|0.5|1|1|2|103|37 NbS00004833g0003.1 protein AED:0.00 eAED:0.06 QI:71|-1|0|1|-1|1|1|0|362; (*GB) gi|357124748|ref|XP_003564059.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100837461 [Brachypodium distachyon];; (*TAIR) AT5G07900.1 (e_value=1e-41) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc12g010650.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00004833g0013.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|2|0|541; (*GB) gi|218197830|gb|EEC80257.1| (e_value=3e-53) hypothetical protein OsI_22219 [Oryza sativa Indica Group];; (*TAIR) AT5G64950.1 (e_value=1e-36) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc12g010650.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbC25975958g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|351723967|ref|NP_001238065.1| (e_value=1e-38) uncharacterized protein LOC100500692 precursor [Glycine max];; (*SWP) sp|P13240|DR206_PEA (e_value=2e-25) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT4G23690.1 (e_value=2e-18) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr4:12339152-12339715 REVERSE LENGTH=187;; (*ITAG) Solyc08g081780.1.1 (e_value=7e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61908290-61908859 transcript_region:SL2.40ch08:61908290..61908859- functional_description:"Dirigent protein (AHRD V1 ***- Q9SDR7_FORIN); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00021735g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|189; (*GB) gi|296084511|emb|CBI25532.3| (e_value=2e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=3e-13) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc04g051880.1.1 (e_value=2e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50325737-50331365 transcript_region:SL2.40ch04:50325737..50331365- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *--- D7KVZ3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00030976g0003.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|0.66|0.5|4|205|98; (*GB) gi|359372829|gb|AEV42262.1| (e_value=2e-28) hypothetical protein [Beta vulgaris];; (*TAIR) AT5G25570.2 (e_value=5e-27) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:8901832-8902891 FORWARD LENGTH=99;; (*ITAG) Solyc08g067980.1.1 (e_value=4e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54257816-54260443 transcript_region:SL2.40ch08:54257816..54260443+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027634g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|293 NbS00004262g0006.1 protein AED:0.30 eAED:0.30 QI:222|1|0.76|1|0.83|0.84|13|0|461; (*GB) gi|48209878|gb|AAT40484.1| (e_value=0.0) putative Myb-like DNA-binding protein [Solanum demissum];; (*SWP) sp|P52551|MYBB_XENLA (e_value=6e-27) Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2;; (*TAIR) AT1G14350.2 (e_value=4e-173) | Symbols: FLP, MYB124 | Duplicated homeodomain-like superfamily protein | chr1:4908427-4910647 FORWARD LENGTH=436;; (*ITAG) Solyc05g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1752928-1757049 transcript_region:SL2.40ch05:1752928..1757049- go_terms:GO:0003700 functional_description:"Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00004262g0007.1 protein AED:0.30 eAED:0.32 QI:0|0.57|0.75|1|0.71|0.75|8|383|408; (*GB) gi|297814526|ref|XP_002875146.1| (e_value=3e-169) hypothetical protein ARALYDRAFT_484188 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O64503|UTR1_ARATH (e_value=8e-169) UDP-galactose/UDP-glucose transporter 1 OS=Arabidopsis thaliana GN=UTR1 PE=1 SV=1;; (*TAIR) AT2G02810.1 (e_value=6e-170) | Symbols: ATUTR1, UTR1 | UDP-galactose transporter 1 | chr2:801643-803289 FORWARD LENGTH=332;; (*ITAG) Solyc05g007150.2.1 (e_value=3e-167) genomic_reference:SL2.40ch05 gene_region:1746851-1751800 transcript_region:SL2.40ch05:1746851..1751800+ go_terms:GO:0005459 functional_description:"UDP-galactose transporter 3 (AHRD V1 **** D7KBJ4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00014193g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|224132872|ref|XP_002327901.1| (e_value=5e-89) predicted protein [Populus trichocarpa];; (*TAIR) AT5G46090.1 (e_value=2e-74) | Symbols: | Protein of unknown function (DUF679) | chr5:18693485-18694129 FORWARD LENGTH=214;; (*ITAG) Solyc12g005490.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:292388-293065 transcript_region:SL2.40ch12:292388..293065- functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00014193g0004.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|321158521|dbj|BAJ72663.1| (e_value=2e-53) ethylene response factor 3b [Nicotiana tabacum];; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=6e-54) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1;; (*TAIR) AT5G44210.1 (e_value=2e-23) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc07g053740.1.1 (e_value=6e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59491419-59492096 transcript_region:SL2.40ch07:59491419..59492096+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014193g0011.1 protein AED:0.06 eAED:0.06 QI:111|1|1|1|0.8|0.83|6|322|290; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=4e-176) PHB2 [Nicotiana benthamiana];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=1e-107) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=3e-164) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=5e-175) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00006300g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|139780|sp|P20144.1|WUN1_SOLTU (e_value=3e-53) Wound-induced protein 1;; (*SWP) sp|P20144|WUN1_SOLTU (e_value=1e-54) Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1;; (*TAIR) AT3G10985.1 (e_value=8e-40) | Symbols: SAG20, WI12, ATWI-12 | senescence associated gene 20 | chr3:3442776-3443108 FORWARD LENGTH=110;; (*ITAG) Solyc06g050760.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:30027192-30027539 transcript_region:SL2.40ch06:30027192..30027539- functional_description:"Wound-induced protein 1 (AHRD V1 ***- WUN1_SOLTU); contains Interpro domain(s) IPR016533 Wound-induced protein, Wun1, subgroup "; NbS00024629g0018.1 protein AED:0.24 eAED:0.24 QI:96|0.66|0.5|1|0.33|0.25|4|0|206; (*GB) gi|40748265|gb|AAR89617.1| (e_value=1e-138) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|P51427|RS52_ARATH (e_value=4e-120) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=3e-121) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=1e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00024629g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|356564895|ref|XP_003550682.1| (e_value=2e-60) PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like [Glycine max];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=6e-51) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=5e-52) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc07g005850.1.1 (e_value=5e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:674049-676424 transcript_region:SL2.40ch07:674049..676424- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00024629g0013.1 protein AED:0.09 eAED:0.09 QI:91|1|1|1|1|1|12|504|1040; (*GB) gi|359484896|ref|XP_002276890.2| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q69P51|CESA9_ORYSJ (e_value=0.0) Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1;; (*TAIR) AT5G17420.1 (e_value=0.0) | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026;; (*ITAG) Solyc07g005840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:667374-673097 transcript_region:SL2.40ch07:667374..673097+ go_terms:GO:0016759 functional_description:"Cellulose synthase 3 (AHRD V1 **** Q2IB41_EUCGR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00024629g0014.1 protein AED:0.21 eAED:0.21 QI:0|1|0.88|1|1|1|9|916|267; (*GB) gi|225445818|ref|XP_002276984.1| (e_value=6e-92) PREDICTED: translation initiation factor IF-3 [Vitis vinifera];; (*SWP) sp|Q8YNE3|IF3_NOSS1 (e_value=3e-30) Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1;; (*TAIR) AT4G30690.1 (e_value=1e-82) | Symbols: | Translation initiation factor 3 protein | chr4:14960742-14962328 FORWARD LENGTH=281;; (*ITAG) Solyc07g005830.2.1 (e_value=7e-123) genomic_reference:SL2.40ch07 gene_region:660995-666057 transcript_region:SL2.40ch07:660995..666057+ go_terms:GO:0006413 functional_description:"Translation initiation factor IF-3 (AHRD V1 ***- B9T4Q8_RICCO); contains Interpro domain(s) IPR001288 Translation initiation factor 3 "; GO:0006413 NbS00024629g0016.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|433; (*GB) gi|225445812|ref|XP_002275298.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Vitis vinifera];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc07g005850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:674049-676424 transcript_region:SL2.40ch07:674049..676424- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00033958g0004.1 protein AED:0.28 eAED:0.28 QI:407|0.89|0.9|1|0.94|1|20|408|613; (*GB) gi|350537129|ref|NP_001234281.1| (e_value=0.0) vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum];; (*SWP) sp|P09469|VATA_DAUCA (e_value=0.0) V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G78900.2 (e_value=0.0) | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623;; (*ITAG) Solyc12g055800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47132031-47139706 transcript_region:SL2.40ch12:47132031..47139706- go_terms:GO:0046961 functional_description:"V-type ATP synthase alpha chain (AHRD V1 ***- VATA_METTH); contains Interpro domain(s) IPR005725 ATPase, V1 complex, subunit A "; GO:0046961 NbS00014775g0021.1 protein AED:0.01 eAED:0.01 QI:288|1|1|1|0.5|0.66|3|440|61; (*GB) gi|225431088|ref|XP_002263940.1| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100267639 [Vitis vinifera];; (*TAIR) AT4G35980.1 (e_value=2e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17030816-17031586 REVERSE LENGTH=87;; (*ITAG) Solyc02g083650.2.1 (e_value=6e-36) genomic_reference:SL2.40ch02 gene_region:41552391-41555731 transcript_region:SL2.40ch02:41552391..41555731- functional_description:"Unknown Protein (AHRD V1)"; NbS00014775g0001.1 protein AED:0.12 eAED:0.15 QI:164|1|0.8|1|0.75|0.6|5|497|317; (*GB) gi|255577530|ref|XP_002529643.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51280.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19037229-19038781 FORWARD LENGTH=430;; (*ITAG) Solyc02g083640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41548650-41550974 transcript_region:SL2.40ch02:41548650..41550974- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *-*- B1Q3A0_BRACM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00014775g0020.1 protein AED:0.24 eAED:0.24 QI:0|0.76|0.64|0.92|0.92|0.85|14|0|1165; (*GB) gi|225431092|ref|XP_002265248.1| (e_value=0.0) PREDICTED: histidine kinase 1-like [Vitis vinifera];; (*SWP) sp|Q9SXL4|AHK1_ARATH (e_value=0.0) Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2;; (*TAIR) AT2G17820.1 (e_value=0.0) | Symbols: ATHK1, AHK1, HK1 | histidine kinase 1 | chr2:7743133-7748013 REVERSE LENGTH=1207;; (*ITAG) Solyc02g083680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41560972-41565212 transcript_region:SL2.40ch02:41560972..41565212- go_terms:GO:0005034,GO:0009927 functional_description:"Multi-sensor hybrid histidine kinase (AHRD V1 *-** A8ZX44_DESOH); contains Interpro domain(s) IPR004358 Signal transduction histidine kinase-related protein, C-terminal "; GO:0005034,GO:0009927 NbS00014775g0019.1 protein AED:0.20 eAED:0.20 QI:191|0.77|0.9|1|1|1|10|926|171; (*GB) gi|74483949|gb|ABA10745.1| (e_value=2e-45) cytosolic ascorbate peroxidase isoform 5 [Solanum lycopersicum];; (*SWP) sp|Q42564|APX3_ARATH (e_value=7e-41) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1;; (*TAIR) AT4G35000.1 (e_value=5e-42) | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16665007-16667541 REVERSE LENGTH=287;; (*ITAG) Solyc02g083620.2.1 (e_value=3e-48) genomic_reference:SL2.40ch02 gene_region:41540791-41544590 transcript_region:SL2.40ch02:41540791..41544590+ go_terms:GO:0016688 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q39780_GOSHI); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0016688 NbS00014775g0023.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.66|0.88|0.87|0.77|9|23|273; (*GB) gi|224134062|ref|XP_002327746.1| (e_value=1e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42564|APX3_ARATH (e_value=5e-50) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1;; (*TAIR) AT4G35000.1 (e_value=4e-51) | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16665007-16667541 REVERSE LENGTH=287;; (*ITAG) Solyc02g083630.2.1 (e_value=2e-65) genomic_reference:SL2.40ch02 gene_region:41546295-41548601 transcript_region:SL2.40ch02:41546295..41548601+ go_terms:GO:0004130,GO:0005247 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q9XGS8_ZANAE); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0004130,GO:0005247 NbS00014775g0025.1 protein AED:0.22 eAED:0.30 QI:0|0|0|1|0|0|2|0|132; (*ITAG) Solyc03g044690.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14328670-14329779 transcript_region:SL2.40ch03:14328670..14329779+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00002132g0016.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.33|0.66|0.5|0.66|3|333|96; (*GB) gi|356567739|ref|XP_003552074.1| (e_value=1e-44) PREDICTED: uncharacterized protein At4g29660-like [Glycine max];; (*SWP) sp|Q94K18|Y4966_ARATH (e_value=3e-35) Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1;; (*TAIR) AT4G29660.1 (e_value=2e-36) | Symbols: EMB2752 | embryo defective 2752 | chr4:14534495-14535171 REVERSE LENGTH=103;; (*ITAG) Solyc12g008810.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2150650-2152871 transcript_region:SL2.40ch12:2150650..2152871- functional_description:"Unknown Protein (AHRD V1)"; NbS00002132g0018.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.57|0.85|0.66|0.57|7|0|635; (*GB) gi|225452394|ref|XP_002273718.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 42 [Vitis vinifera];; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1;; (*TAIR) AT5G40380.1 (e_value=0.0) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc02g086590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43823654-43827592 transcript_region:SL2.40ch02:43823654..43827592- go_terms:GO:0004672 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672 NbS00002132g0015.1 protein AED:0.19 eAED:0.19 QI:12|0.91|0.76|1|0.75|0.61|13|0|665; (*GB) gi|255553045|ref|XP_002517565.1| (e_value=0.0) Boron transporter, putative [Ricinus communis];; (*SWP) sp|Q9XI23|BOR4_ARATH (e_value=0.0) Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1;; (*TAIR) AT1G15460.1 (e_value=0.0) | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683;; (*ITAG) Solyc03g120020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62586853-62591867 transcript_region:SL2.40ch03:62586853..62591867+ go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0005452 NbS00025495g0002.1 protein AED:0.15 eAED:0.15 QI:72|1|1|1|1|1|6|192|277; (*GB) gi|224118802|ref|XP_002317910.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWK7|BEE3_ARATH (e_value=5e-59) Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1;; (*TAIR) AT1G73830.1 (e_value=4e-60) | Symbols: BEE3 | BR enhanced expression 3 | chr1:27760027-27761346 FORWARD LENGTH=261;; (*ITAG) Solyc03g119390.2.1 (e_value=2e-114) genomic_reference:SL2.40ch03 gene_region:62067629-62069260 transcript_region:SL2.40ch03:62067629..62069260+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00006786g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|225445670|ref|XP_002266488.1| (e_value=1e-42) PREDICTED: proteasome subunit beta type-6 [Vitis vinifera];; (*SWP) sp|Q8LD27|PSB6_ARATH (e_value=2e-40) Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2;; (*TAIR) AT4G31300.2 (e_value=4e-42) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=234;; (*ITAG) Solyc07g016200.2.1 (e_value=2e-38) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00006786g0010.1 protein AED:0.10 eAED:0.10 QI:350|1|0.8|1|0.75|0.8|5|316|169; (*GB) gi|359487530|ref|XP_003633609.1| (e_value=8e-61) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q0III6|DNJB6_BOVIN (e_value=5e-20) DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1;; (*TAIR) AT1G56300.1 (e_value=1e-48) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:21079022-21080168 REVERSE LENGTH=156;; (*ITAG) Solyc01g100230.2.1 (e_value=4e-100) genomic_reference:SL2.40ch01 gene_region:82041782-82043997 transcript_region:SL2.40ch01:82041782..82043997- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6U761_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00006786g0014.1 protein AED:0.09 eAED:0.16 QI:162|0.75|0.88|1|0.87|0.77|9|619|458; (*GB) gi|224123924|ref|XP_002330243.1| (e_value=6e-121) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25800.2 (e_value=2e-92) | Symbols: | Calmodulin-binding protein | chr4:13125224-13127765 FORWARD LENGTH=601;; (*ITAG) Solyc01g100240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82072030-82076462 transcript_region:SL2.40ch01:82072030..82076462- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7L2U6_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00006786g0009.1 protein AED:0.18 eAED:0.20 QI:152|0.87|0.77|1|1|1|9|0|588; (*GB) gi|224122988|ref|XP_002318966.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc08g041890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00024357g0006.1 protein AED:0.09 eAED:0.09 QI:56|0.75|0.8|1|0.5|0.4|5|271|285; (*GB) gi|359483494|ref|XP_002273045.2| (e_value=2e-98) PREDICTED: GDSL esterase/lipase At5g45960 [Vitis vinifera];; (*SWP) sp|Q9FJ40|GDL86_ARATH (e_value=1e-88) GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1;; (*TAIR) AT5G45960.1 (e_value=8e-90) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18637174-18640319 REVERSE LENGTH=375;; (*ITAG) Solyc10g008810.2.1 (e_value=4e-128) genomic_reference:SL2.40ch10 gene_region:2882250-2885615 transcript_region:SL2.40ch10:2882250..2885615- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45960 (AHRD V1 ***- GDL86_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003849g0007.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.5|1|1|4|0|89 NbS00003849g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|107; (*GB) gi|224091885|ref|XP_002309385.1| (e_value=2e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0C2|EGC1_ARATH (e_value=5e-37) Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana GN=EGC1 PE=2 SV=1;; (*TAIR) AT4G30380.1 (e_value=3e-38) | Symbols: | Barwin-related endoglucanase | chr4:14860486-14860994 FORWARD LENGTH=123;; (*ITAG) Solyc07g006390.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1211878-1212553 transcript_region:SL2.40ch07:1211878..1212553- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN16_9ROSI); contains Interpro domain(s) IPR005132 Rare lipoprotein A "; NbS00003849g0012.1 protein AED:0.33 eAED:0.66 QI:0|0|0|1|0|0|2|0|87 NbS00012562g0011.1 protein AED:0.17 eAED:0.21 QI:0|0.5|0.33|0.66|1|1|3|0|381; (*GB) gi|359493995|ref|XP_002285537.2| (e_value=7e-125) PREDICTED: BES1/BZR1 homolog protein 4-like [Vitis vinifera];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=7e-99) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=5e-100) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc07g062260.2.1 (e_value=3e-154) genomic_reference:SL2.40ch07 gene_region:62262206-62265340 transcript_region:SL2.40ch07:62262206..62265340- go_terms:GO:0030528 functional_description:"BES1/BZR1 homolog protein 4 (AHRD V1 **-- BEH4_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00012562g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0.85|1|1|1|7|322|515; (*GB) gi|225461754|ref|XP_002285533.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252018 [Vitis vinifera];; (*TAIR) AT3G14830.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:4983386-4985666 FORWARD LENGTH=476;; (*ITAG) Solyc07g062250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62253632-62260099 transcript_region:SL2.40ch07:62253632..62260099- functional_description:"Genomic DNA chromosome 3 BAC clone T21E2 (AHRD V1 ***- Q9LH72_ARATH)"; NbS00020366g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|879; (*GB) gi|359474779|ref|XP_002280183.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At4g39110-like [Vitis vinifera];; (*SWP) sp|Q9T020|Y4391_ARATH (e_value=0.0) Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1;; (*TAIR) AT4G39110.1 (e_value=0.0) | Symbols: | Malectin/receptor-like protein kinase family protein | chr4:18222483-18225119 REVERSE LENGTH=878;; (*ITAG) Solyc01g109950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88534564-88537518 transcript_region:SL2.40ch01:88534564..88537518+ go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00020366g0014.1 protein AED:0.09 eAED:0.09 QI:177|0.85|0.62|1|0.42|0.37|8|350|932; (*GB) gi|225434275|ref|XP_002275596.1| (e_value=0.0) PREDICTED: DNA repair and recombination protein RAD54-like [Vitis vinifera];; (*SWP) sp|P41410|RAD54_SCHPO (e_value=1e-32) DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp54 PE=1 SV=2;; (*TAIR) AT2G16390.1 (e_value=0.0) | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:7097638-7101182 FORWARD LENGTH=888;; (*ITAG) Solyc01g109970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88549263-88557040 transcript_region:SL2.40ch01:88549263..88557040+ go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2UQK2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00020366g0018.1 protein AED:0.17 eAED:0.17 QI:312|1|0.90|1|1|0.90|11|0|650; (*GB) gi|225428380|ref|XP_002283529.1| (e_value=0.0) PREDICTED: SUMO-activating enzyme subunit 2-like [Vitis vinifera];; (*SWP) sp|Q9SJT1|SAE2_ARATH (e_value=0.0) SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1;; (*TAIR) AT2G21470.1 (e_value=0.0) | Symbols: SAE2, ATSAE2, EMB2764 | SUMO-activating enzyme 2 | chr2:9198752-9202136 FORWARD LENGTH=625;; (*ITAG) Solyc01g109960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88537753-88546575 transcript_region:SL2.40ch01:88537753..88546575- go_terms:GO:0019948 functional_description:"Ubiquitin-activating enzyme E1 3 (AHRD V1 **** B2VT99_PYRTR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019948 NbS00020366g0016.1 protein AED:0.19 eAED:0.26 QI:195|0.5|0.4|0.8|0.75|1|5|0|599; (*GB) gi|22652127|gb|AAN03627.1|AF406703_1 (e_value=0.0) BEL1-related homeotic protein 30 [Solanum tuberosum];; (*SWP) sp|O65685|BLH6_ARATH (e_value=2e-112) BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1;; (*TAIR) AT4G34610.2 (e_value=2e-113) | Symbols: BLH6 | BEL1-like homeodomain 6 | chr4:16530546-16532498 REVERSE LENGTH=532;; (*ITAG) Solyc01g109980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88557367-88561809 transcript_region:SL2.40ch01:88557367..88561809- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 6 (AHRD V1 *--- BLH6_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00040676g0009.1 protein AED:0.41 eAED:0.63 QI:0|0|0|0.5|0.2|0.33|6|0|222; (*ITAG) Solyc10g047840.1.1 (e_value=5e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00040676g0010.1 protein AED:0.22 eAED:0.26 QI:250|0.22|0.4|1|0.33|0.6|10|0|318; (*GB) gi|3811293|gb|AAC69450.1| (e_value=2e-155) putative serine/threonine protein kinase [Nicotiana tabacum];; (*SWP) sp|P0C5D6|SAPK3_ORYSJ (e_value=9e-122) Serine/threonine-protein kinase SAPK3 OS=Oryza sativa subsp. japonica GN=SAPK3 PE=1 SV=1;; (*TAIR) AT4G33950.1 (e_value=5e-113) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 | Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362;; (*ITAG) Solyc08g077780.2.1 (e_value=2e-146) genomic_reference:SL2.40ch08 gene_region:58856672-58862420 transcript_region:SL2.40ch08:58856672..58862420+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00033849g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.83|1|0.8|0.66|6|100|748; (*GB) gi|255564824|ref|XP_002523406.1| (e_value=0.0) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LVC3|PUM12_ARATH (e_value=6e-148) Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2;; (*TAIR) AT5G56510.1 (e_value=5e-149) | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=596;; (*ITAG) Solyc01g028800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:33225332-33229037 transcript_region:SL2.40ch01:33225332..33229037- go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio-family RNA binding protein (AHRD V1 *-*- A8N273_COPC7); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00033849g0008.1 protein AED:0.16 eAED:0.16 QI:87|1|1|1|0.33|0.25|4|311|478; (*GB) gi|89242710|gb|ABD60225.1| (e_value=0.0) ent-kaurenoic acid 13-hydroxylase [Stevia rebaudiana];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=1e-146) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=9e-139) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g042880.1.1 (e_value=8e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53723939-53726909 transcript_region:SL2.40ch07:53723939..53726909+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00016916g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|147790057|emb|CAN75979.1| (e_value=3e-64) hypothetical protein VITISV_012183 [Vitis vinifera];; (*TAIR) AT3G05980.1 (e_value=2e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:1795514-1796251 FORWARD LENGTH=245;; (*ITAG) Solyc06g054280.1.1 (e_value=1e-93) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33583731-33584426 transcript_region:SL2.40ch06:33583731..33584426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016916g0005.1 protein AED:0.49 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|126; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=8e-42) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=2e-43) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-41) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-43) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00016916g0006.1 protein AED:0.12 eAED:0.12 QI:70|1|1|1|1|1|4|261|490; (*GB) gi|147822727|emb|CAN61764.1| (e_value=0.0) hypothetical protein VITISV_025411 [Vitis vinifera];; (*SWP) sp|Q9SBA7|STP8_ARATH (e_value=0.0) Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2;; (*TAIR) AT5G26250.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:9196758-9198681 FORWARD LENGTH=507;; (*ITAG) Solyc06g054270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33568688-33571416 transcript_region:SL2.40ch06:33568688..33571416- go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 5 (AHRD V1 ***- GTR5_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00053645g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|765; (*GB) gi|5733831|gb|AAC31213.3| (e_value=0.0) ethylene receptor homolog [Nicotiana tabacum];; (*SWP) sp|Q0WPQ2|ETR2_ARATH (e_value=0.0) Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2;; (*TAIR) AT3G23150.1 (e_value=0.0) | Symbols: ETR2 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:8255156-8257560 FORWARD LENGTH=773;; (*ITAG) Solyc06g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33043757-33047094 transcript_region:SL2.40ch06:33043757..33047094- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** Q9XET8_SOLLC); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0004872,GO:0051740,GO:0004696 NbS00053645g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|181; (*ITAG) Solyc01g056950.1.1 (e_value=6e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00035066g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|1732406|gb|AAB38748.1| (e_value=5e-31) S25-XP1 DNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=2e-24) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=2e-25) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc03g005520.1.1 (e_value=7e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:397152-397787 transcript_region:SL2.40ch03:397152..397787+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00035066g0007.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|155; (*GB) gi|356574758|ref|XP_003555512.1| (e_value=1e-45) PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max];; (*SWP) sp|Q9LTC5|ERF98_ARATH (e_value=1e-41) Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1;; (*TAIR) AT3G23230.1 (e_value=9e-43) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139;; (*ITAG) Solyc03g005510.1.1 (e_value=5e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:387846-388373 transcript_region:SL2.40ch03:387846..388373- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 *-** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00018652g0001.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|1|1|2|0|308; (*GB) gi|356528487|ref|XP_003532834.1| (e_value=2e-36) PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein-like [Glycine max];; (*SWP) sp|Q9LX16|EIL4_ARATH (e_value=7e-35) Putative ETHYLENE INSENSITIVE 3-like 4 protein OS=Arabidopsis thaliana GN=EIL4 PE=2 SV=1;; (*TAIR) AT5G10120.1 (e_value=5e-36) | Symbols: | Ethylene insensitive 3 family protein | chr5:3169732-3171147 FORWARD LENGTH=471;; (*ITAG) Solyc04g054840.1.1 (e_value=2e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52449278-52450789 transcript_region:SL2.40ch04:52449278..52450789- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 *-** D5L144_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00045010g0005.1 protein AED:0.01 eAED:0.01 QI:178|0.75|0.8|1|0.5|0.6|5|1144|561; (*GB) gi|225456018|ref|XP_002279561.1| (e_value=2e-153) PREDICTED: uncharacterized protein LOC100256054 [Vitis vinifera];; (*TAIR) AT3G18240.2 (e_value=5e-134) | Symbols: | Ribosomal protein S24/S35, mitochondrial | chr3:6255810-6257695 FORWARD LENGTH=419;; (*ITAG) Solyc03g119170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61905241-61909056 transcript_region:SL2.40ch03:61905241..61909056+ functional_description:"AGL140Cp (AHRD V1 *-*- Q750S9_ASHGO); contains Interpro domain(s) IPR019349 Ribosomal protein S24/S35, mitochondrial "; NbC26012810g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|222; (*GB) gi|359494374|ref|XP_002265613.2| (e_value=9e-84) PREDICTED: probable protein phosphatase 2C 6-like [Vitis vinifera];; (*SWP) sp|Q8RXZ4|P2C18_ARATH (e_value=5e-72) Probable protein phosphatase 2C 18 OS=Arabidopsis thaliana GN=At1g79630 PE=2 SV=1;; (*TAIR) AT1G79630.2 (e_value=6e-75) | Symbols: | Protein phosphatase 2C family protein | chr1:29962931-29964382 REVERSE LENGTH=394;; (*ITAG) Solyc10g005640.2.1 (e_value=1e-115) genomic_reference:SL2.40ch10 gene_region:514112-519337 transcript_region:SL2.40ch10:514112..519337+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00010673g0001.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|93 NbS00010673g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|297737731|emb|CBI26932.3| (e_value=3e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=6e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc04g007580.1.1 (e_value=6e-42) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:1262092-1262586 transcript_region:SL2.40ch04:1262092..1262586+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 **-- B7FA06_ORYSJ)"; NbS00016540g0008.1 protein AED:0.09 eAED:0.09 QI:160|0.75|0.8|1|1|1|5|146|365; (*GB) gi|255538702|ref|XP_002510416.1| (e_value=0.0) ornithine carbamoyltransferase, putative [Ricinus communis];; (*SWP) sp|O50039|OTC_ARATH (e_value=5e-170) Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2;; (*TAIR) AT1G75330.1 (e_value=4e-171) | Symbols: OTC | ornithine carbamoyltransferase | chr1:28266457-28268383 REVERSE LENGTH=375;; (*ITAG) Solyc04g080610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62314021-62318683 transcript_region:SL2.40ch04:62314021..62318683- go_terms:GO:0004585 functional_description:"Ornithine carbamoyltransferase (AHRD V1 **** Q9SEX4_CANLI); contains Interpro domain(s) IPR002292 Ornithine carbamoyltransferase "; GO:0004585 NbS00016540g0007.1 protein AED:0.12 eAED:0.13 QI:161|0.71|0.75|1|0.42|0.37|8|0|1530; (*GB) gi|356502634|ref|XP_003520123.1| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100816942 [Glycine max];; (*SWP) sp|Q9SU08|AUXI1_ARATH (e_value=7e-48) Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2;; (*TAIR) AT4G36520.1 (e_value=1e-60) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17230589-17235435 REVERSE LENGTH=1422;; (*ITAG) Solyc04g080600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62306723-62313603 transcript_region:SL2.40ch04:62306723..62313603+ go_terms:GO:0031072 functional_description:"UBA domain-containing protein (AHRD V1 *--- C9SNY0_VERA1); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00036901g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|3|0|532; (*GB) gi|225439751|ref|XP_002273172.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SF38|PP222_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1;; (*TAIR) AT3G09650.1 (e_value=0.0) | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2958704-2961040 FORWARD LENGTH=778;; (*ITAG) Solyc09g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:917949-920536 transcript_region:SL2.40ch09:917949..920536+ go_terms:GO:0003729,GO:0008270 functional_description:"Pentatricopeptide repeat protein (AHRD V1 *-*- A7BJL0_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003729,GO:0008270 NbS00036901g0010.1 protein AED:0.19 eAED:0.20 QI:32|0.88|0.72|1|0.82|0.77|18|311|1571; (*GB) gi|359481367|ref|XP_002273203.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Vitis vinifera];; (*SWP) sp|Q9LYZ7|UPL4_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1;; (*TAIR) AT5G02880.1 (e_value=0.0) | Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:662643-668847 FORWARD LENGTH=1502;; (*ITAG) Solyc09g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:907686-916971 transcript_region:SL2.40ch09:907686..916971+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 **** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00001228g0007.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|425; (*GB) gi|225446871|ref|XP_002283883.1| (e_value=4e-39) PREDICTED: uncharacterized protein LOC100259123 [Vitis vinifera];; (*TAIR) AT2G42840.1 (e_value=8e-36) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306;; (*ITAG) Solyc07g055950.2.1 (e_value=3e-44) genomic_reference:SL2.40ch07 gene_region:61193403-61195377 transcript_region:SL2.40ch07:61193403..61195377- functional_description:"Meiosis 5 (AHRD V1 *-*- B6T5X0_MAIZE)"; NbS00001228g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|381; (*GB) gi|225446863|ref|XP_002283816.1| (e_value=4e-16) PREDICTED: uncharacterized protein LOC100247157 [Vitis vinifera];; (*TAIR) AT3G58840.2 (e_value=5e-14) | Symbols: | Tropomyosin-related | chr3:21757499-21758455 REVERSE LENGTH=318;; (*ITAG) Solyc07g056370.2.1 (e_value=5e-64) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00001228g0010.1 protein AED:0.02 eAED:0.02 QI:215|0.5|0.33|1|0|0|3|0|368; (*GB) gi|255558716|ref|XP_002520382.1| (e_value=6e-123) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G58800.1 (e_value=3e-106) | Symbols: | unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21748562-21749596 FORWARD LENGTH=344;; (*ITAG) Solyc07g055940.1.1 (e_value=2e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:61188419-61189444 transcript_region:SL2.40ch07:61188419..61189444+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q019U2_OSTTA)"; NbS00018037g0005.1 protein AED:0.38 eAED:0.41 QI:47|0.62|0.66|0.88|0.87|0.88|9|250|194; (*GB) gi|18447917|dbj|BAB84324.1| (e_value=1e-108) ras-related protein RAB8-3 [Nicotiana tabacum];; (*SWP) sp|O24466|RAE1A_ARATH (e_value=4e-103) Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1;; (*TAIR) AT5G59840.1 (e_value=1e-104) | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=6e-112) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00001037g0006.1 protein AED:0.01 eAED:0.02 QI:122|1|0.66|1|1|1|3|0|346; (*GB) gi|224133706|ref|XP_002327660.1| (e_value=5e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66230.1 (e_value=6e-66) | Symbols: | Chalcone-flavanone isomerase family protein | chr5:26462704-26463873 FORWARD LENGTH=329;; (*ITAG) Solyc02g083890.2.1 (e_value=3e-146) genomic_reference:SL2.40ch02 gene_region:41718943-41720379 transcript_region:SL2.40ch02:41718943..41720379+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001037g0005.1 protein AED:0.03 eAED:0.03 QI:222|1|1|1|1|1|2|224|103; (*GB) gi|357466949|ref|XP_003603759.1| (e_value=5e-24) Gibberellin-regulated protein [Medicago truncatula];; (*SWP) sp|Q93X17|SNAK2_SOLTU (e_value=1e-24) Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1;; (*TAIR) AT2G18420.1 (e_value=2e-23) | Symbols: | Gibberellin-regulated family protein | chr2:7993861-7994334 FORWARD LENGTH=94;; (*ITAG) Solyc02g083880.2.1 (e_value=7e-39) genomic_reference:SL2.40ch02 gene_region:41715236-41716114 transcript_region:SL2.40ch02:41715236..41716114+ go_terms:GO:0005515 functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6SKV6_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; GO:0005515 NbS00001037g0112.1 protein AED:0.01 eAED:0.01 QI:116|1|1|1|1|1|2|257|220 NbS00001037g0114.1 protein AED:0.08 eAED:0.08 QI:293|0.33|0.5|1|0.33|0.5|4|97|269 NbS00001037g0113.1 protein AED:0.08 eAED:0.09 QI:33|0.84|0.67|1|0.87|0.82|34|0|3568 NbS00003546g0008.1 protein AED:0.45 eAED:0.46 QI:0|1|0.8|1|1|0.8|5|0|140; (*GB) gi|224067027|ref|XP_002302333.1| (e_value=5e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5SLW9|DNAJ1_THET8 (e_value=3e-16) Chaperone protein DnaJ 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=dnaJ1 PE=3 SV=1;; (*TAIR) AT5G16650.1 (e_value=2e-45) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:5463446-5465075 REVERSE LENGTH=128;; (*ITAG) Solyc04g076080.2.1 (e_value=7e-82) genomic_reference:SL2.40ch04 gene_region:58628004-58631852 transcript_region:SL2.40ch04:58628004..58631852- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6UF39_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00003546g0009.1 protein AED:0.07 eAED:0.07 QI:256|1|0.66|1|0|0|3|0|512; (*GB) gi|359492929|ref|XP_002283907.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Vitis vinifera];; (*SWP) sp|Q3E9F0|PP392_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1;; (*TAIR) AT5G18475.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:6129255-6130775 REVERSE LENGTH=506;; (*ITAG) Solyc04g076070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58626133-58627668 transcript_region:SL2.40ch04:58626133..58627668+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LXV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020560g0004.1 protein AED:0.25 eAED:0.25 QI:90|0.90|0.75|1|0.63|0.66|12|0|249; (*GB) gi|122194125|sp|Q1W375.1|PMM_TOBAC (e_value=5e-162) RecName: Full=Phosphomannomutase; AltName: Full=NtPMM;; (*SWP) sp|Q1W375|PMM_TOBAC (e_value=1e-163) Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G45790.1 (e_value=7e-150) | Symbols: ATPMM, PMM | phosphomannomutase | chr2:18855876-18857753 FORWARD LENGTH=246;; (*ITAG) Solyc05g048760.2.1 (e_value=6e-164) genomic_reference:SL2.40ch05 gene_region:58550837-58554198 transcript_region:SL2.40ch05:58550837..58554198+ go_terms:GO:0004615 functional_description:"Phosphomannomutase 2"; GO:0004615 NbS00043890g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.16|0.14|1|0.5|0.57|7|0|319; (*GB) gi|255552828|ref|XP_002517457.1| (e_value=1e-126) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q43128|PMA10_ARATH (e_value=1e-69) ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2;; (*TAIR) AT1G17260.1 (e_value=1e-70) | Symbols: AHA10 | autoinhibited H(+)-ATPase isoform 10 | chr1:5904058-5908898 FORWARD LENGTH=947;; (*ITAG) Solyc07g017780.2.1 (e_value=1e-66) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00043890g0008.1 protein AED:0.45 eAED:0.56 QI:0|0|0|0.83|0.2|0.5|6|0|215; (*GB) gi|5669167|gb|AAD46188.1| (e_value=4e-78) plasma membrane proton ATPase [Nicotiana plumbaginifolia];; (*SWP) sp|Q03194|PMA4_NICPL (e_value=5e-54) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT3G42640.1 (e_value=1e-52) | Symbols: AHA8, HA8 | H(+)-ATPase 8 | chr3:14724309-14728062 FORWARD LENGTH=948;; (*ITAG) Solyc03g117150.2.1 (e_value=3e-52) genomic_reference:SL2.40ch03 gene_region:60436921-60440907 transcript_region:SL2.40ch03:60436921..60440907+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00043890g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|182; (*GB) gi|300119936|gb|ADJ67993.1| (e_value=3e-47) triacylglycerol lipase [Ricinus communis];; (*TAIR) AT3G14360.1 (e_value=5e-29) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:4791596-4793534 FORWARD LENGTH=518;; (*ITAG) Solyc03g123750.2.1 (e_value=8e-60) genomic_reference:SL2.40ch03 gene_region:64550025-64553196 transcript_region:SL2.40ch03:64550025..64553196+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00050731g0001.1 protein AED:0.10 eAED:0.10 QI:57|1|1|1|0.7|0.63|11|346|509; (*GB) gi|224078662|ref|XP_002305597.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=0.0) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61820.1 (e_value=0.0) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22835452-22838444 FORWARD LENGTH=516;; (*ITAG) Solyc02g080300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39136416-39140040 transcript_region:SL2.40ch02:39136416..39140040+ go_terms:GO:0004338,GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338,GO:0047782 NbS00060188g0001.1 protein AED:0.05 eAED:0.65 QI:159|1|0.5|1|0|0|2|0|134; (*ITAG) Solyc03g115540.1.1 (e_value=8e-21) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59265019-59267254 transcript_region:SL2.40ch03:59265019..59267254+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00041465g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|281; (*GB) gi|224060769|ref|XP_002300266.1| (e_value=7e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|A9A3L9|RLMN_NITMS (e_value=7e-56) Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1;; (*TAIR) AT3G19630.1 (e_value=4e-134) | Symbols: | Radical SAM superfamily protein | chr3:6818676-6820674 REVERSE LENGTH=372;; (*ITAG) Solyc01g107040.2.1 (e_value=5e-156) genomic_reference:SL2.40ch01 gene_region:86468483-86473122 transcript_region:SL2.40ch01:86468483..86473122- go_terms:GO:0051536,GO:0005737 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- D6TN06_9CHLR); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "; GO:0051536,GO:0005737 NbS00052259g0010.1 protein AED:0.21 eAED:0.27 QI:851|0.33|0.25|1|0.66|0.5|4|0|349; (*GB) gi|297737540|emb|CBI26741.3| (e_value=6e-134) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G55580.1 (e_value=2e-121) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:22515601-22517408 FORWARD LENGTH=496;; (*ITAG) Solyc12g015640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5642779-5645448 transcript_region:SL2.40ch12:5642779..5645448+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00052259g0009.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0|1|0|0|4|0|179; (*GB) gi|326499996|dbj|BAJ90833.1| (e_value=2e-56) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q9SZY4|PTR27_ARATH (e_value=1e-50) Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1;; (*TAIR) AT2G26690.1 (e_value=1e-51) | Symbols: | Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577;; (*ITAG) Solyc07g032490.2.1 (e_value=9e-61) genomic_reference:SL2.40ch07 gene_region:39134351-39136861 transcript_region:SL2.40ch07:39134351..39136861- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00047538g0010.1 protein AED:0.04 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|463; (*GB) gi|11493393|gb|AAG35472.1|U67064_1 (e_value=0.0) sulfur [Nicotiana tabacum];; (*SWP) sp|O22436|CHLI_TOBAC (e_value=0.0) Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1;; (*TAIR) AT4G18480.1 (e_value=0.0) | Symbols: CHLI1, CH42, CH-42, CHL11, CHLI-1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:10201897-10203361 REVERSE LENGTH=424;; (*ITAG) Solyc10g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2822974-2826287 transcript_region:SL2.40ch10:2822974..2826287+ go_terms:GO:0016887,GO:0016851 functional_description:"Magnesium chelatase ATPase subunit I (AHRD V1 **** Q53RM0_ORYSJ); contains Interpro domain(s) IPR011775 Magnesium chelatase, ATPase subunit I "; GO:0016887,GO:0016851 NbS00047538g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.14|0|0.5|0.85|0.87|8|0|489; (*GB) gi|113205399|gb|AAU90302.2| (e_value=5e-19) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=6e-44) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00038819g0014.1 protein AED:0.14 eAED:0.15 QI:0|0.16|0.14|1|0.5|0.42|7|0|603; (*GB) gi|59668406|emb|CAI39243.1| (e_value=0.0) copper-containing amine oxidase [Solanum lycopersicum];; (*SWP) sp|Q8H1H9|AMO_ARATH (e_value=0.0) Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1;; (*TAIR) AT4G12290.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr4:7304434-7306973 FORWARD LENGTH=741;; (*ITAG) Solyc08g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60120528-60124693 transcript_region:SL2.40ch08:60120528..60124693- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RBR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00038819g0013.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|509; (*GB) gi|147804684|emb|CAN71441.1| (e_value=0.0) hypothetical protein VITISV_012452 [Vitis vinifera];; (*SWP) sp|O64637|C76C2_ARATH (e_value=1e-81) Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1;; (*TAIR) AT4G12320.1 (e_value=2e-138) | Symbols: CYP706A6 | cytochrome P450, family 706, subfamily A, polypeptide 6 | chr4:7314939-7316647 REVERSE LENGTH=518;; (*ITAG) Solyc08g079420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60118494-60120898 transcript_region:SL2.40ch08:60118494..60120898+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00040624g0002.1 protein AED:0.32 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|255546925|ref|XP_002514520.1| (e_value=4e-42) Calmodulin, putative [Ricinus communis];; (*SWP) sp|Q9LI84|CML16_ARATH (e_value=7e-39) Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=2;; (*TAIR) AT3G25600.1 (e_value=5e-40) | Symbols: | Calcium-binding EF-hand family protein | chr3:9307367-9307852 FORWARD LENGTH=161;; (*ITAG) Solyc04g006930.2.1 (e_value=5e-41) genomic_reference:SL2.40ch04 gene_region:618400-625090 transcript_region:SL2.40ch04:618400..625090+ go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00040624g0004.1 protein AED:0.12 eAED:0.13 QI:0|1|0.81|1|1|1|11|0|1262; (*GB) gi|225423806|ref|XP_002280418.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 9-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SX33|ALA9_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1;; (*TAIR) AT1G68710.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200;; (*ITAG) Solyc04g006940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:625569-631037 transcript_region:SL2.40ch04:625569..631037- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00019753g0007.1 protein AED:0.21 eAED:0.24 QI:4|0.83|0.63|1|0.77|0.78|19|0|958; (*GB) gi|224460069|gb|ACN43585.1| (e_value=0.0) nuclear cap-binding protein [Solanum tuberosum];; (*SWP) sp|Q9SIU2|NCBP1_ARATH (e_value=0.0) Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2;; (*TAIR) AT2G13540.1 (e_value=0.0) | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848;; (*ITAG) Solyc10g005530.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:432555-449709 transcript_region:SL2.40ch10:432555..449709- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 1 (AHRD V1 *-** B0X1G0_CULQU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515,GO:0000339 NbS00019753g0008.1 protein AED:0.13 eAED:0.16 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|57013955|ref|YP_173427.1| (e_value=2e-29) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|P15688|NU2M_BETVU (e_value=8e-19) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*TAIR) AT2G07689.1 (e_value=6e-32) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00003176g0023.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|459; (*GB) gi|365927742|gb|AEX07772.1| (e_value=0.0) cytochrome P450 [Catharanthus roseus];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=4e-157) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=0.0) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g042880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53723939-53726909 transcript_region:SL2.40ch07:53723939..53726909+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00003176g0019.1 protein AED:0.26 eAED:0.26 QI:3|1|0|1|1|1|2|0|412; (*GB) gi|109727320|gb|ABG45945.1| (e_value=0.0) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-99) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G31170.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15153499-15154846 REVERSE LENGTH=412;; (*ITAG) Solyc07g042680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00003176g0006.1 protein AED:0.27 eAED:0.27 QI:90|1|1|1|0.5|0.33|3|499|102; (*GB) gi|1620986|emb|CAA70082.1| (e_value=2e-62) 40S ribosomal protein S17 [Nicotiana plumbaginifolia];; (*SWP) sp|B1I1J7|RS17_DESAP (e_value=6e-26) 30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1;; (*TAIR) AT1G49400.1 (e_value=9e-49) | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116;; (*ITAG) Solyc12g009380.1.1 (e_value=5e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2671827-2673707 transcript_region:SL2.40ch12:2671827..2673707+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 ***- B4FMH4_MAIZE); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00003176g0020.1 protein AED:0.32 eAED:0.33 QI:0|0.85|0.66|1|0.78|0.73|15|225|614; (*GB) gi|350539321|ref|NP_001234387.1| (e_value=0.0) starch synthase VI [Solanum lycopersicum];; (*SWP) sp|Q6MAS9|GLGA_PARUW (e_value=1e-115) Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1;; (*TAIR) AT4G18240.1 (e_value=5e-125) | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | chr4:10082221-10087044 FORWARD LENGTH=1040;; (*ITAG) Solyc07g042830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53663549-53682449 transcript_region:SL2.40ch07:53663549..53682449- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbS00003176g0005.1 protein AED:0.18 eAED:0.18 QI:298|0.8|0.5|1|1|1|6|371|407; (*GB) gi|225445678|ref|XP_002267030.1| (e_value=1e-156) PREDICTED: chloroplast envelope membrane protein [Vitis vinifera];; (*SWP) sp|Q5N4M6|PCXA_SYNP6 (e_value=2e-32) Proton extrusion protein PcxA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pcxA PE=3 SV=1;; (*TAIR) AT4G31040.1 (e_value=1e-150) | Symbols: | CemA-like proton extrusion protein-related | chr4:15111811-15113881 REVERSE LENGTH=438;; (*ITAG) Solyc07g042800.2.1 (e_value=2e-69) genomic_reference:SL2.40ch07 gene_region:53620534-53622898 transcript_region:SL2.40ch07:53620534..53622898+ functional_description:"cDNA clone J090072E23 full insert sequence (Fragment) (AHRD V1 *-*- B7F9R4_ORYSJ)"; NbS00003176g0007.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|610; (*GB) gi|357446017|ref|XP_003593286.1| (e_value=0.0) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|O65543|PP343_ARATH (e_value=4e-180) Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2 SV=2;; (*TAIR) AT4G31070.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15118696-15120537 REVERSE LENGTH=613;; (*ITAG) Solyc07g042760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53591827-53593638 transcript_region:SL2.40ch07:53591827..53593638+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBJ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00017576g0006.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.25|1|0.66|0.5|4|0|561; (*GB) gi|224090783|ref|XP_002309080.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37730.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00017576g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|350535879|ref|NP_001233962.1| (e_value=5e-17) S-protein homologue precursor [Solanum lycopersicum];; (*TAIR) AT4G16195.1 (e_value=1e-17) | Symbols: | Plant self-incompatibility protein S1 family | chr4:9173165-9173650 REVERSE LENGTH=161;; (*ITAG) Solyc09g011100.1.1 (e_value=7e-50) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4428078-4428527 transcript_region:SL2.40ch09:4428078..4428527+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 -**- C7FE99_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00057419g0003.1 protein AED:0.16 eAED:0.17 QI:395|1|0.9|1|0.55|0.7|10|0|614; (*GB) gi|225432732|ref|XP_002282939.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Vitis vinifera];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G32010.2 (e_value=0.0) | Symbols: CVL1 | CVP2 like 1 | chr2:13625344-13628081 FORWARD LENGTH=594;; (*ITAG) Solyc09g082370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63510443-63514374 transcript_region:SL2.40ch09:63510443..63514374- go_terms:GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0046030 NbS00039865g0006.1 protein AED:0.26 eAED:0.26 QI:295|1|1|1|0.8|0.66|6|164|695; (*GB) gi|359486185|ref|XP_003633408.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I-like [Vitis vinifera];; (*SWP) sp|Q9C952|CPSF3_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1;; (*TAIR) AT1G61010.3 (e_value=0.0) | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693;; (*ITAG) Solyc07g049480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57077978-57086643 transcript_region:SL2.40ch07:57077978..57086643+ go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B5X1A0_SALSA); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00039865g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|147787280|emb|CAN71414.1| (e_value=2e-128) hypothetical protein VITISV_029216 [Vitis vinifera];; (*SWP) sp|Q9C952|CPSF3_ARATH (e_value=8e-118) Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1;; (*TAIR) AT1G61010.3 (e_value=6e-119) | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693;; (*ITAG) Solyc07g049480.2.1 (e_value=4e-144) genomic_reference:SL2.40ch07 gene_region:57077978-57086643 transcript_region:SL2.40ch07:57077978..57086643+ go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B5X1A0_SALSA); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00000755g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.91|0.92|1|0.75|0.92|13|432|795; (*GB) gi|359475799|ref|XP_002285000.2| (e_value=3e-83) PREDICTED: uncharacterized protein LOC100264514 [Vitis vinifera];; (*SWP) sp|P0C1I8|CYP6_RHIO9 (e_value=1e-48) Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp6 PE=3 SV=1;; (*TAIR) AT4G32420.3 (e_value=4e-75) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15647550-15652103 REVERSE LENGTH=837;; (*ITAG) Solyc08g067090.2.1 (e_value=9e-107) genomic_reference:SL2.40ch08 gene_region:53210448-53219760 transcript_region:SL2.40ch08:53210448..53219760+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B9H8E5_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00000755g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.42|0.71|1|1|7|138|265; (*GB) gi|296084315|emb|CBI24703.3| (e_value=4e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q946Y7|SYP61_ARATH (e_value=6e-83) Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1;; (*TAIR) AT1G28490.1 (e_value=5e-84) | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants 61 | chr1:10016433-10017842 FORWARD LENGTH=245;; (*ITAG) Solyc12g089150.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62702377-62703497 transcript_region:SL2.40ch12:62702377..62703497- functional_description:"Syntaxin-like protein (AHRD V1 *-*- B0E004_LACBS); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; NbS00012745g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0.33|0.66|1|1|3|0|276; (*GB) gi|296086458|emb|CBI32047.3| (e_value=2e-130) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10380.1 (e_value=1e-93) | Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305;; (*ITAG) Solyc05g006700.2.1 (e_value=7e-154) genomic_reference:SL2.40ch05 gene_region:1366839-1367894 transcript_region:SL2.40ch05:1366839..1367894- functional_description:"Wall-associated receptor kinase-like 20 (AHRD V1 *--- WAKLQ_ARATH)"; NbS00012745g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|3|0|216; (*GB) gi|259479222|dbj|BAI40146.1| (e_value=5e-81) glutathione S-transferase 1 [Diospyros kaki];; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=4e-66) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=3e-67) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g026210.1.1 (e_value=4e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40113650-40114827 transcript_region:SL2.40ch05:40113650..40114827- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 1 (AHRD V1 **** C8KH57_DIOKA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00059348g0005.1 protein AED:0.07 eAED:0.10 QI:0|0.8|0.90|1|0.7|0.81|11|0|527; (*GB) gi|295322838|gb|ADG01868.1| (e_value=0.0) plastid RNA-binding protein [Nicotiana benthamiana];; (*TAIR) AT3G48500.1 (e_value=0.0) | Symbols: PDE312, PTAC10 | Nucleic acid-binding, OB-fold-like protein | chr3:17962209-17965408 FORWARD LENGTH=668;; (*ITAG) Solyc03g111050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55775851-55786202 transcript_region:SL2.40ch03:55775851..55786202+ go_terms:GO:0003723 functional_description:"Plastid RNA-binding protein (AHRD V1 **-- D6QX33_NICBE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00005114g0008.1 protein AED:0.06 eAED:0.06 QI:278|0.75|0.76|0.94|0.75|0.76|17|0|838; (*GB) gi|255545124|ref|XP_002513623.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q5ZK92|SPAST_CHICK (e_value=6e-70) Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1;; (*TAIR) AT4G28000.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13925456-13929280 FORWARD LENGTH=830;; (*ITAG) Solyc03g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2280750-2288212 transcript_region:SL2.40ch03:2280750..2288212- go_terms:GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH (AHRD V1 *--- FTSH_SHIFL); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00005114g0012.1 protein AED:0.22 eAED:0.22 QI:375|1|1|1|0.6|0.66|6|356|301; (*GB) gi|147816971|emb|CAN77760.1| (e_value=1e-92) hypothetical protein VITISV_034908 [Vitis vinifera];; (*SWP) sp|Q9FLX3|FB293_ARATH (e_value=4e-61) F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1;; (*TAIR) AT5G52880.1 (e_value=3e-62) | Symbols: | F-box family protein | chr5:21432002-21433695 REVERSE LENGTH=269;; (*ITAG) Solyc03g007750.2.1 (e_value=6e-168) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005114g0007.1 protein AED:0.31 eAED:0.31 QI:0|1|0.8|1|1|1|5|0|254; (*GB) gi|83284001|gb|ABC01908.1| (e_value=4e-139) putative 24 kDa seed maturation protein-like protein [Solanum tuberosum];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=1e-90) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=1e-91) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc03g007740.2.1 (e_value=1e-141) genomic_reference:SL2.40ch03 gene_region:2271270-2273817 transcript_region:SL2.40ch03:2271270..2273817+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00016292g0003.1 protein AED:0.21 eAED:0.21 QI:42|1|0.90|1|0.9|0.81|11|685|392; (*GB) gi|225448605|ref|XP_002278805.1| (e_value=7e-124) PREDICTED: uncharacterized protein At2g40430 [Vitis vinifera];; (*SWP) sp|O22892|GSR2_ARATH (e_value=1e-59) Uncharacterized protein At2g40430 OS=Arabidopsis thaliana GN=At2g40430 PE=1 SV=2;; (*TAIR) AT2G40430.1 (e_value=9e-61) | Symbols: | CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 709 Blast hits to 643 proteins in 201 species: Archae - 0; Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink). | chr2:16879466-16882365 REVERSE LENGTH=442;; (*ITAG) Solyc02g068420.2.1 (e_value=7e-168) genomic_reference:SL2.40ch02 gene_region:32948141-32958285 transcript_region:SL2.40ch02:32948141..32958285- functional_description:"Glioma tumor suppressor candidate region gene 2 (AHRD V1 **-- Q6QLN3_RAT); contains Interpro domain(s) IPR011211 Tumor suppressor protein Gltscr2 "; NbS00017066g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|537; (*GB) gi|116006458|gb|ABJ51763.1| (e_value=0.0) nodulation signaling pathway 1-like protein [Nicotiana benthamiana];; (*SWP) sp|Q4VYC8|NSP1_MEDTR (e_value=0.0) Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1;; (*TAIR) AT3G13840.1 (e_value=3e-144) | Symbols: | GRAS family transcription factor | chr3:4555305-4556837 REVERSE LENGTH=510;; (*ITAG) Solyc03g123400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64317825-64319453 transcript_region:SL2.40ch03:64317825..64319453- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* Q4VYC4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00017066g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|222051768|dbj|BAH15357.1| (e_value=3e-127) germin like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZRA4|AB19A_PRUPE (e_value=7e-102) Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1;; (*TAIR) AT5G20630.1 (e_value=1e-95) | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211;; (*ITAG) Solyc03g123410.1.1 (e_value=3e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64320774-64321400 transcript_region:SL2.40ch03:64320774..64321400- go_terms:GO:0050162 functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00017066g0026.1 protein AED:0.06 eAED:0.06 QI:150|1|1|1|0.71|0.87|8|8|543; (*GB) gi|359482487|ref|XP_003632781.1| (e_value=4e-171) PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL1-like [Vitis vinifera];; (*SWP) sp|Q1PFE1|AIL1_ARATH (e_value=2e-126) AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1;; (*TAIR) AT1G72570.1 (e_value=2e-127) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:27331381-27333698 FORWARD LENGTH=415;; (*ITAG) Solyc03g123430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64336005-64339974 transcript_region:SL2.40ch03:64336005..64339974- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00017066g0029.1 protein AED:0.36 eAED:0.36 QI:143|1|0.5|1|1|1|2|0|135; (*GB) gi|297847796|ref|XP_002891779.1| (e_value=1e-24) hypothetical protein ARALYDRAFT_892440 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G53903.1 (e_value=1e-24) | Symbols: | Protein of unknown function (DUF581) | chr1:20132363-20132842 FORWARD LENGTH=126;; (*ITAG) Solyc03g123460.2.1 (e_value=1e-59) genomic_reference:SL2.40ch03 gene_region:64358120-64359366 transcript_region:SL2.40ch03:64358120..64359366+ functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *--- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00017066g0031.1 protein AED:0.37 eAED:0.37 QI:72|0.66|0.61|1|0.58|0.69|13|317|431; (*GB) gi|225440992|ref|XP_002277401.1| (e_value=4e-107) PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=1e-97) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=8e-99) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc03g123440.2.1 (e_value=3e-162) genomic_reference:SL2.40ch03 gene_region:64341847-64352070 transcript_region:SL2.40ch03:64341847..64352070- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00017066g0030.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|255; (*ITAG) Solyc03g123440.2.1 (e_value=9e-73) genomic_reference:SL2.40ch03 gene_region:64341847-64352070 transcript_region:SL2.40ch03:64341847..64352070- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00017066g0023.1 protein AED:0.49 eAED:0.82 QI:0|0|0|1|1|1|2|0|213; (*ITAG) Solyc03g123440.2.1 (e_value=4e-14) genomic_reference:SL2.40ch03 gene_region:64341847-64352070 transcript_region:SL2.40ch03:64341847..64352070- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00017066g0035.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.8|1|0.5|0.6|5|62|365; (*GB) gi|224054073|ref|XP_002298091.1| (e_value=2e-129) predicted protein [Populus trichocarpa];; (*SWP) sp|Q52532|MHPC_PSESP (e_value=2e-13) 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Pseudomonas sp. GN=mhpC PE=3 SV=1;; (*TAIR) AT1G17430.1 (e_value=1e-97) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:5982310-5983919 FORWARD LENGTH=332;; (*ITAG) Solyc03g123390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64313562-64317751 transcript_region:SL2.40ch03:64313562..64317751+ functional_description:"Hydrolase (AHRD V1 ***- Q4PSG2_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00017066g0006.1 protein AED:0.26 eAED:0.28 QI:0|0.83|0.71|1|1|1|7|0|780; (*GB) gi|33637487|gb|AAQ23899.1| (e_value=0.0) RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=7e-90) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=0.0) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00047855g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|582; (*GB) gi|255555987|ref|XP_002519028.1| (e_value=0.0) RNA polymerase-associated protein RTF1, putative [Ricinus communis];; (*SWP) sp|A2AQ19|RTF1_MOUSE (e_value=2e-20) RNA polymerase-associated protein RTF1 homolog OS=Mus musculus GN=Rtf1 PE=2 SV=1;; (*TAIR) AT1G61040.1 (e_value=0.0) | Symbols: VIP5 | plus-3 domain-containing protein | chr1:22483817-22485748 FORWARD LENGTH=643;; (*ITAG) Solyc02g078580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37822668-37824605 transcript_region:SL2.40ch02:37822668..37824605+ go_terms:GO:0005634 functional_description:"Paf1/RNA polymerase II complex (AHRD V1 **-- Q2U0F7_ASPOR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634 NbS00026549g0004.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|362; (*GB) gi|356496044|ref|XP_003516880.1| (e_value=4e-168) PREDICTED: protein RMD5 homolog A-like [Glycine max];; (*SWP) sp|Q6GLP4|RMD5A_XENLA (e_value=3e-52) Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1;; (*TAIR) AT4G37880.1 (e_value=1e-140) | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr4:17810183-17811349 FORWARD LENGTH=388;; (*ITAG) Solyc02g091720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47541110-47542270 transcript_region:SL2.40ch02:47541110..47542270- go_terms:GO:0005515,GO:0004842 functional_description:"Macrophage erythroblast attacher (AHRD V1 **-- C5FFR8_NANOT); contains Interpro domain(s) IPR013144 Ran binding protein-like, CRA domain "; GO:0005515,GO:0004842 NbS00033875g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.4|1|0.5|0.8|5|0|469; (*GB) gi|359489368|ref|XP_003633913.1| (e_value=2e-173) PREDICTED: rho GTPase-activating protein 4-like [Vitis vinifera];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=6e-17) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT2G46710.1 (e_value=3e-137) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr2:19192105-19194656 FORWARD LENGTH=455;; (*ITAG) Solyc01g096360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79201448-79205523 transcript_region:SL2.40ch01:79201448..79205523+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 ***- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00021849g0007.1 protein AED:0.06 eAED:0.06 QI:871|1|0.88|1|0.5|0.55|9|239|610; (*GB) gi|225437237|ref|XP_002282102.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera];; (*SWP) sp|Q9M9Y5|GAUT6_ARATH (e_value=0.0) Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1;; (*TAIR) AT1G06780.1 (e_value=0.0) | Symbols: GAUT6 | galacturonosyltransferase 6 | chr1:2083689-2086853 FORWARD LENGTH=589;; (*ITAG) Solyc12g010200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3315323-3320618 transcript_region:SL2.40ch12:3315323..3320618+ go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00041282g0006.1 protein AED:0.13 eAED:0.13 QI:296|0.90|0.83|1|0.72|0.58|12|708|1009; (*GB) gi|225459209|ref|XP_002285742.1| (e_value=0.0) PREDICTED: protein FAM91A1-like [Vitis vinifera];; (*SWP) sp|Q6TEP1|F91A1_DANRE (e_value=5e-75) Protein FAM91A1 OS=Danio rerio GN=fam91a1 PE=2 SV=2;; (*TAIR) AT1G35220.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr1:12909293-12913916 FORWARD LENGTH=1005;; (*ITAG) Solyc04g074720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58236728-58248897 transcript_region:SL2.40ch04:58236728..58248897+ functional_description:"Fam91a1 protein (AHRD V1 *--- B2RYP3_RAT)"; NbS00030835g0006.1 protein AED:0.16 eAED:0.16 QI:354|0.66|0.85|1|0.16|0.42|7|72|332; (*GB) gi|225437380|ref|XP_002268904.1| (e_value=3e-174) PREDICTED: monoglyceride lipase isoform 1 [Vitis vinifera];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=4e-29) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT3G62860.1 (e_value=2e-170) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:23239577-23242143 REVERSE LENGTH=348;; (*ITAG) Solyc09g075140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62435204-62439921 transcript_region:SL2.40ch09:62435204..62439921- go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0008289,GO:0004622 NbS00018148g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|108; (*ITAG) Solyc09g011430.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4757131-4757559 transcript_region:SL2.40ch09:4757131..4757559+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018148g0001.1 protein AED:0.39 eAED:0.39 QI:204|0.77|0.7|1|1|1|10|0|348; (*GB) gi|225440520|ref|XP_002275006.1| (e_value=1e-58) PREDICTED: probable proteasome inhibitor isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M330|PSMF1_ARATH (e_value=2e-48) Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1;; (*TAIR) AT3G53970.2 (e_value=7e-50) | Symbols: | proteasome inhibitor-related | chr3:19985208-19986762 FORWARD LENGTH=252;; (*ITAG) Solyc09g011450.2.1 (e_value=6e-109) genomic_reference:SL2.40ch09 gene_region:4762129-4769484 transcript_region:SL2.40ch09:4762129..4769484+ functional_description:"cDNA clone J075093E01 full insert sequence (AHRD V1 ***- B7F961_ORYSJ); contains Interpro domain(s) IPR013886 PI31 proteasome regulator "; NbS00018148g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.5|0.75|1|1|4|0|125; (*GB) gi|388513781|gb|AFK44952.1| (e_value=1e-67) unknown [Medicago truncatula];; (*SWP) sp|Q6P8E9|NH2L1_XENTR (e_value=5e-58) NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1;; (*TAIR) AT4G22380.1 (e_value=4e-67) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:11812041-11812922 REVERSE LENGTH=128;; (*ITAG) Solyc09g092080.2.1 (e_value=1e-73) genomic_reference:SL2.40ch09 gene_region:66580614-66583077 transcript_region:SL2.40ch09:66580614..66583077+ go_terms:GO:0005515,GO:0030515 functional_description:"50S ribosomal protein L7Ae (AHRD V1 **-- B2WJB2_PYRTR); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0005515,GO:0030515 NbS00045919g0007.1 protein AED:0.13 eAED:0.13 QI:204|1|0.8|1|0.5|0.6|5|226|292; (*GB) gi|222080621|gb|ACM41587.1| (e_value=8e-70) bHLH transcription factor MYC4 [Catharanthus roseus];; (*SWP) sp|Q9C8P8|BH080_ARATH (e_value=9e-48) Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1;; (*TAIR) AT1G35460.1 (e_value=7e-49) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:13040092-13041907 FORWARD LENGTH=259;; (*ITAG) Solyc06g065040.2.1 (e_value=7e-122) genomic_reference:SL2.40ch06 gene_region:36946016-36950721 transcript_region:SL2.40ch06:36946016..36950721+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014289g0007.1 protein AED:0.36 eAED:0.39 QI:0|0.41|0.38|0.69|0.58|0.69|13|0|553; (*GB) gi|217075767|gb|ACJ86243.1| (e_value=7e-61) unknown [Medicago truncatula];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=8e-55) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=1e-56) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=1e-71) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00006861g0014.1 protein AED:0.08 eAED:0.08 QI:302|0.66|0.5|1|0.66|0.5|4|0|366; (*GB) gi|224063587|ref|XP_002301215.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L4Y2|LPAT4_ARATH (e_value=6e-151) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1;; (*TAIR) AT1G75020.2 (e_value=5e-152) | Symbols: LPAT4 | lysophosphatidyl acyltransferase 4 | chr1:28171779-28173357 FORWARD LENGTH=378;; (*ITAG) Solyc04g079880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61792016-61794085 transcript_region:SL2.40ch04:61792016..61794085+ go_terms:GO:0005515,GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** B2LWM4_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0005515,GO:0003841 NbS00006861g0015.1 protein AED:0.36 eAED:0.36 QI:421|1|1|1|0.87|0.88|9|279|490; (*GB) gi|255538528|ref|XP_002510329.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-121) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc05g013460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6653147-6662740 transcript_region:SL2.40ch05:6653147..6662740+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00008971g0006.1 protein AED:0.11 eAED:0.11 QI:185|0.66|0.75|1|1|0.75|4|1663|441; (*GB) gi|224107933|ref|XP_002314659.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64131723-64136146 transcript_region:SL2.40ch09:64131723..64136146- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00008971g0003.1 protein AED:0.66 eAED:0.72 QI:0|0|0.25|0.5|1|1|4|0|100; (*GB) gi|356500290|ref|XP_003518966.1| (e_value=5e-18) PREDICTED: uncharacterized protein LOC100500641 [Glycine max];; (*TAIR) AT4G14615.1 (e_value=1e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8383842-8384814 FORWARD LENGTH=76;; (*ITAG) Solyc09g083070.2.1 (e_value=1e-24) genomic_reference:SL2.40ch09 gene_region:64137735-64141529 transcript_region:SL2.40ch09:64137735..64141529- functional_description:"Unknown Protein (AHRD V1)"; NbS00008280g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|255552951|ref|XP_002517518.1| (e_value=6e-134) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M8L2|FBK30_ARATH (e_value=2e-117) F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1;; (*TAIR) AT1G80440.1 (e_value=2e-118) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:30241763-30242827 FORWARD LENGTH=354;; (*ITAG) Solyc06g066770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38339332-38340435 transcript_region:SL2.40ch06:38339332..38340435- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDI0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00033127g0004.1 protein AED:0.07 eAED:0.07 QI:147|1|1|1|1|1|4|305|597; (*GB) gi|224140315|ref|XP_002323528.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M331|PTR45_ARATH (e_value=0.0) Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2;; (*TAIR) AT3G53960.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:19978306-19980886 REVERSE LENGTH=602;; (*ITAG) Solyc10g084940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63613952-63616015 transcript_region:SL2.40ch10:63613952..63616015- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00025151g0023.1 protein AED:0.03 eAED:0.03 QI:13|0.87|0.55|1|1|1|9|496|1742; (*GB) gi|356564737|ref|XP_003550605.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100794210 [Glycine max];; (*SWP) sp|Q9W0T1|NU301_DROME (e_value=6e-13) Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2;; (*TAIR) AT5G22760.1 (e_value=0.0) | Symbols: | PHD finger family protein | chr5:7571635-7577662 FORWARD LENGTH=1566;; (*ITAG) Solyc11g066780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49647915-49660185 transcript_region:SL2.40ch11:49647915..49660185- go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0008270 NbS00025151g0022.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|1|1|5|0|325; (*GB) gi|225436355|ref|XP_002271043.1| (e_value=4e-154) PREDICTED: lysine histidine transporter 1 [Vitis vinifera];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=6e-21) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT1G08230.2 (e_value=5e-124) | Symbols: | Transmembrane amino acid transporter family protein | chr1:2583715-2586700 REVERSE LENGTH=451;; (*ITAG) Solyc11g066800.1.1 (e_value=8e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49679693-49686191 transcript_region:SL2.40ch11:49679693..49686191- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9HLA1_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00025151g0020.1 protein AED:0.06 eAED:0.06 QI:0|0.94|0.9|1|0.94|0.95|20|500|1033; (*GB) gi|45935136|gb|AAS79594.1| (e_value=0.0) putative DNA repair protein [Ipomoea trifida];; (*SWP) sp|Q9FNI6|SM3L2_ARATH (e_value=0.0) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1;; (*TAIR) AT5G22750.1 (e_value=0.0) | Symbols: RAD5 | DNA/RNA helicase protein | chr5:7565374-7570871 REVERSE LENGTH=1029;; (*ITAG) Solyc11g066790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49669875-49679136 transcript_region:SL2.40ch11:49669875..49679136+ go_terms:GO:0016818,GO:0005524,GO:0008270 functional_description:"DNA helicase (AHRD V1 **-- C4R4A1_PICPG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0016818,GO:0005524,GO:0008270 NbS00025151g0021.1 protein AED:0.18 eAED:0.19 QI:312|0.76|0.84|1|0.88|0.92|26|442|1013; (*GB) gi|225436363|ref|XP_002270388.1| (e_value=0.0) PREDICTED: AP-2 complex subunit alpha-2 [Vitis vinifera];; (*SWP) sp|Q8LPL6|AP2A1_ARATH (e_value=0.0) AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1;; (*TAIR) AT5G22770.2 (e_value=0.0) | Symbols: alpha-ADR | alpha-adaptin | chr5:7579844-7588026 REVERSE LENGTH=1012;; (*ITAG) Solyc06g074650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42580360-42594085 transcript_region:SL2.40ch06:42580360..42594085- go_terms:GO:0008022 functional_description:"AP-2 complex subunit alpha (AHRD V1 ***- C0NYN0_AJECG); contains Interpro domain(s) IPR017104 Adaptor protein complex AP-2, alpha subunit "; GO:0008022 NbS00025151g0024.1 protein AED:0.24 eAED:1.00 QI:28|0|0|1|0|0|2|56|43 NbS00005050g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0|2|0|247; (*GB) gi|302142054|emb|CBI19257.3| (e_value=2e-46) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LET0|BH107_ARATH (e_value=3e-22) Putative transcription factor bHLH107 OS=Arabidopsis thaliana GN=BHLH107 PE=2 SV=1;; (*TAIR) AT3G56770.1 (e_value=2e-23) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21029202-21030618 REVERSE LENGTH=230;; (*ITAG) Solyc04g076240.1.1 (e_value=3e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:58772216-58773532 transcript_region:SL2.40ch04:58772216..58773532- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005050g0012.1 protein AED:0.10 eAED:0.18 QI:271|0|0.66|1|0|0.33|3|210|77 NbS00005050g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.84|0.85|1|0.61|0.71|14|509|505; (*GB) gi|225458187|ref|XP_002281307.1| (e_value=0.0) PREDICTED: AP-4 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q9JKC7|AP4M1_MOUSE (e_value=4e-85) AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1;; (*TAIR) AT4G24550.2 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr4:12675873-12678903 FORWARD LENGTH=451;; (*ITAG) Solyc04g076230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58763880-58771326 transcript_region:SL2.40ch04:58763880..58771326- go_terms:GO:0008565,GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- D0N5Q6_PHYIN); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0008565,GO:0030276 NbS00003310g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.77|1|1|1|18|11|663; (*GB) gi|193290682|gb|ACF17649.1| (e_value=0.0) putative cytochrome reductase [Capsicum annuum];; (*SWP) sp|P37116|NCPR_VIGRR (e_value=0.0) NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1;; (*TAIR) AT4G24520.1 (e_value=0.0) | Symbols: ATR1, AR1 | P450 reductase 1 | chr4:12663065-12667066 REVERSE LENGTH=692;; (*ITAG) Solyc04g076380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58873950-58880708 transcript_region:SL2.40ch04:58873950..58880708- go_terms:GO:0003958 functional_description:"Cytochrome P450 NADPH-reductase (AHRD V1 **** B3RFK2_PETHY); contains Interpro domain(s) IPR015702 NADPH Cytochrome P450 Reductase "; GO:0003958 NbS00005300g0003.1 protein AED:0.02 eAED:0.02 QI:102|1|0.8|1|0.75|0.6|5|365|352; (*GB) gi|359480528|ref|XP_002270448.2| (e_value=5e-46) PREDICTED: transcription factor bHLH25-like [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=3e-39) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=2e-40) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091820.1.1 (e_value=5e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47620024-47621666 transcript_region:SL2.40ch02:47620024..47621666+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 ***- Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00025489g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.42|0.25|1|0.57|0.62|8|0|638; (*GB) gi|225446231|ref|XP_002263587.1| (e_value=0.0) PREDICTED: chloride channel ClC5 [Vitis vinifera];; (*SWP) sp|P60300|CLCG_ARATH (e_value=0.0) Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2;; (*TAIR) AT5G33280.1 (e_value=0.0) | Symbols: | Voltage-gated chloride channel family protein | chr5:12549280-12552305 FORWARD LENGTH=765;; (*ITAG) Solyc07g007690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2347155-2354951 transcript_region:SL2.40ch07:2347155..2354951+ go_terms:GO:0005515,GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005515,GO:0005247 NbS00027456g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|0|0|3|0|173; (*GB) gi|359488924|ref|XP_002278256.2| (e_value=2e-55) PREDICTED: putative NAC domain-containing protein 94-like [Vitis vinifera];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=5e-47) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT1G26870.1 (e_value=4e-48) | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425;; (*ITAG) Solyc02g087920.2.1 (e_value=7e-68) genomic_reference:SL2.40ch02 gene_region:44750151-44751604 transcript_region:SL2.40ch02:44750151..44751604+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00025220g0015.1 protein AED:0.29 eAED:0.33 QI:0|0.75|0.61|0.92|0.66|0.84|13|0|746; (*GB) gi|359494388|ref|XP_002267637.2| (e_value=0.0) PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=0.0) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT1G53590.1 (e_value=0.0) | Symbols: NTMC2TYPE6.1, NTMC2T6.1 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751;; (*ITAG) Solyc07g061950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62039788-62047399 transcript_region:SL2.40ch07:62039788..62047399- functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- D7L359_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00025220g0016.1 protein AED:0.20 eAED:0.20 QI:0|0.92|0.88|0.96|0.84|0.80|26|196|1320; (*GB) gi|296081351|emb|CBI17681.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUD7|CALS8_ARATH (e_value=0.0) Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2;; (*TAIR) AT3G14570.1 (e_value=0.0) | Symbols: ATGSL04, gsl04, atgsl4 | glucan synthase-like 4 | chr3:4892643-4902628 FORWARD LENGTH=1976;; (*ITAG) Solyc07g061920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62024605-62036385 transcript_region:SL2.40ch07:62024605..62036385+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00001822g0001.1 protein AED:0.13 eAED:0.13 QI:733|0|0.5|1|0|1|2|371|94; (*GB) gi|255551941|ref|XP_002517015.1| (e_value=7e-58) 40S ribosomal protein S15, putative [Ricinus communis];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=1e-58) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09510.1 (e_value=8e-59) | Symbols: | Ribosomal protein S19 family protein | chr5:2955698-2956554 REVERSE LENGTH=152;; (*ITAG) Solyc06g053820.2.1 (e_value=3e-60) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00001822g0008.1 protein AED:0.29 eAED:0.29 QI:394|0.66|0.5|1|1|1|4|0|100 NbS00013139g0008.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|167; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-50) hypothetical protein [Nicotiana tabacum]; NbS00013139g0009.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|66 NbS00027540g0011.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|358; (*GB) gi|209978913|gb|ACJ04728.1| (e_value=1e-73) WRKY transcription factor-30 [Capsicum annuum];; (*SWP) sp|Q9SUP6|WRK53_ARATH (e_value=2e-16) Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1;; (*TAIR) AT4G23810.1 (e_value=2e-17) | Symbols: WRKY53, ATWRKY53 | WRKY family transcription factor | chr4:12392666-12393739 REVERSE LENGTH=324;; (*ITAG) Solyc08g082110.2.1 (e_value=2e-137) genomic_reference:SL2.40ch08 gene_region:62164391-62166398 transcript_region:SL2.40ch08:62164391..62166398- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0019900 NbS00027540g0010.1 protein AED:0.12 eAED:0.12 QI:197|1|0.87|1|0.71|0.75|8|0|325; (*GB) gi|147790324|emb|CAN61200.1| (e_value=2e-176) hypothetical protein VITISV_003214 [Vitis vinifera];; (*SWP) sp|C1BK83|SEH1_OSMMO (e_value=1e-33) Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1;; (*TAIR) AT1G64350.1 (e_value=3e-156) | Symbols: SEH1H | Transducin/WD40 repeat-like superfamily protein | chr1:23881582-23883073 FORWARD LENGTH=326;; (*ITAG) Solyc08g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62159102-62164303 transcript_region:SL2.40ch08:62159102..62164303+ functional_description:"Transport protein SEC13 (AHRD V1 ***- C1GD28_PARBD); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00027540g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|12003392|gb|AAG43553.1|AF211535_1 (e_value=6e-71) Avr9/Cf-9 rapidly elicited protein 194 [Nicotiana tabacum];; (*TAIR) AT5G41810.2 (e_value=3e-31) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). | chr5:16738302-16739474 FORWARD LENGTH=279;; (*ITAG) Solyc08g082090.1.1 (e_value=2e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62154056-62154547 transcript_region:SL2.40ch08:62154056..62154547+ functional_description:"Avr9/Cf-9 rapidly elicited protein 194 (AHRD V1 ***- Q9FQZ4_TOBAC)"; NbS00054924g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|357466501|ref|XP_003603535.1| (e_value=2e-12) hypothetical protein MTR_3g108830 [Medicago truncatula];; (*TAIR) AT5G61260.1 (e_value=3e-11) | Symbols: | Plant calmodulin-binding protein-related | chr5:24637109-24638599 FORWARD LENGTH=496;; (*ITAG) Solyc08g069020.1.1 (e_value=8e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:55314775-55316037 transcript_region:SL2.40ch08:55314775..55316037- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00013561g0002.1 protein AED:0.19 eAED:0.20 QI:476|0.88|0.9|1|0.44|0.3|10|2288|223; (*GB) gi|14787784|emb|CAC44257.1| (e_value=3e-99) FtsZ-like protein [Nicotiana tabacum];; (*SWP) sp|O82533|FTZ21_ARATH (e_value=5e-62) Cell division protein FtsZ homolog 2-1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-1 PE=1 SV=2;; (*TAIR) AT2G36250.2 (e_value=3e-63) | Symbols: FTSZ2-1, ATFTSZ2-1 | Tubulin/FtsZ family protein | chr2:15197661-15199932 REVERSE LENGTH=478;; (*ITAG) Solyc10g083490.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62591083-62601325 transcript_region:SL2.40ch10:62591083..62601325+ go_terms:GO:0005737,GO:0043234 functional_description:"Cell division protein ftsZ (AHRD V1 ***- A0YTK0_LYNSP); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0005737,GO:0043234 NbS00029774g0002.1 protein AED:0.02 eAED:0.02 QI:180|0|0.66|0.66|0|0.33|3|1021|34 NbS00023123g0003.1 protein AED:0.21 eAED:0.21 QI:411|1|1|1|0.85|0.87|8|435|399; (*GB) gi|224118020|ref|XP_002317713.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=1e-36) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT1G73480.1 (e_value=2e-175) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27629266-27632486 FORWARD LENGTH=463;; (*ITAG) Solyc03g098020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00007632g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|3|0|724; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00007632g0019.1 protein AED:0.33 eAED:0.33 QI:412|0.90|0.95|1|0.90|0.95|22|482|704; (*GB) gi|225434528|ref|XP_002276394.1| (e_value=0.0) PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Vitis vinifera];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=0.0) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=0.0) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00007632g0014.1 protein AED:0.39 eAED:0.41 QI:0|1|0|1|1|1|2|0|103; (*GB) gi|1706330|sp|P51846.1|PDC2_TOBAC (e_value=2e-63) RecName: Full=Pyruvate decarboxylase isozyme 2; Short=PDC;; (*SWP) sp|P51846|PDC2_TOBAC (e_value=6e-65) Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1;; (*TAIR) AT5G01330.1 (e_value=5e-61) | Symbols: PDC3 | pyruvate decarboxylase-3 | chr5:132538-134807 REVERSE LENGTH=592;; (*ITAG) Solyc06g082130.2.1 (e_value=3e-62) genomic_reference:SL2.40ch06 gene_region:44337242-44340219 transcript_region:SL2.40ch06:44337242..44340219+ go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase 2 (AHRD V1 **** Q5BN15_PETHY); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00007632g0007.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|99; (*ITAG) Solyc06g069800.1.1 (e_value=8e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39851933-39852693 transcript_region:SL2.40ch06:39851933..39852693- go_terms:GO:0009055 functional_description:"Unknown Protein (AHRD V1)"; GO:0009055 NbS00007632g0020.1 protein AED:0.19 eAED:0.23 QI:0|0.5|0.33|1|0.5|0.33|3|0|205; (*GB) gi|147835623|emb|CAN66272.1| (e_value=1e-36) hypothetical protein VITISV_018033 [Vitis vinifera];; (*ITAG) Solyc06g069810.1.1 (e_value=1e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39859951-39860766 transcript_region:SL2.40ch06:39859951..39860766- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00000853g0007.1 protein AED:0.00 eAED:0.00 QI:193|1|1|1|1|1|2|412|83; (*GB) gi|225436767|ref|XP_002267360.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100240880 [Vitis vinifera];; (*TAIR) AT3G62920.1 (e_value=3e-28) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23260717-23261171 FORWARD LENGTH=80;; (*ITAG) Solyc09g074620.2.1 (e_value=9e-47) genomic_reference:SL2.40ch09 gene_region:61937997-61940486 transcript_region:SL2.40ch09:61937997..61940486- functional_description:"Unknown Protein (AHRD V1)"; NbS00000853g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|297821208|ref|XP_002878487.1| (e_value=4e-45) glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=2e-44) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=1e-45) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc09g074600.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61935895-61936203 transcript_region:SL2.40ch09:61935895..61936203+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7LYE9_ARALY); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00000853g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0|0.33|3|0|283; (*GB) gi|224135975|ref|XP_002327350.1| (e_value=8e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q75VW3|DNAJ_HYDTT (e_value=4e-13) Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=dnaJ PE=3 SV=1;; (*TAIR) AT4G09350.1 (e_value=1e-84) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:5931317-5932152 REVERSE LENGTH=249;; (*ITAG) Solyc09g074610.2.1 (e_value=4e-124) genomic_reference:SL2.40ch09 gene_region:61937141-61938371 transcript_region:SL2.40ch09:61937141..61938371+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- B7GKC9_ANOFW); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00014588g0006.1 protein AED:0.43 eAED:0.65 QI:429|0.33|0.5|1|0.66|0.5|4|0|43 NbS00014588g0009.1 protein AED:0.32 eAED:0.32 QI:139|1|1|1|1|1|2|283|97; (*GB) gi|224145162|ref|XP_002325548.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72020.1 (e_value=4e-18) | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27109521-27110327 REVERSE LENGTH=97;; (*ITAG) Solyc06g065180.2.1 (e_value=2e-30) genomic_reference:SL2.40ch06 gene_region:37028954-37032350 transcript_region:SL2.40ch06:37028954..37032350+ functional_description:"SLL1 protein (AHRD V1 ***- A5X2S6_9ERIC)"; NbS00058148g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|374; (*GB) gi|357438065|ref|XP_003589308.1| (e_value=6e-30) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=4e-23) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-24) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g015000.1.1 (e_value=1e-129) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:9285667-9287496 transcript_region:SL2.40ch05:9285667..9287496+ functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 ***- FBL47_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003492g0006.1 protein AED:0.13 eAED:0.14 QI:45|0.66|0.25|1|0.66|0.75|4|0|301; (*GB) gi|255561230|ref|XP_002521626.1| (e_value=5e-149) carbonyl reductase, putative [Ricinus communis];; (*SWP) sp|Q9ZUH5|SDR2_ARATH (e_value=9e-92) Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1;; (*TAIR) AT2G24190.1 (e_value=7e-93) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10283740-10284934 REVERSE LENGTH=296;; (*ITAG) Solyc11g071460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52002807-52004953 transcript_region:SL2.40ch11:52002807..52004953- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00009441g0005.1 protein AED:0.09 eAED:0.09 QI:376|0.5|0.33|1|0.5|0.33|3|0|460; (*GB) gi|356524223|ref|XP_003530730.1| (e_value=3e-180) PREDICTED: GDSL esterase/lipase At4g10955-like [Glycine max];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=6e-27) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT5G50890.1 (e_value=1e-139) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc07g056250.2.1 (e_value=2e-163) genomic_reference:SL2.40ch07 gene_region:61407932-61409930 transcript_region:SL2.40ch07:61407932..61409930+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00041167g0007.1 protein AED:0.07 eAED:0.07 QI:253|0.77|0.7|1|1|1|10|0|800; (*GB) gi|359477548|ref|XP_002279154.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261336 [Vitis vinifera];; (*SWP) sp|A1Z9E2|LIN54_DROME (e_value=3e-20) Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1 SV=1;; (*TAIR) AT4G14770.1 (e_value=4e-127) | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2 | chr4:8481522-8484825 REVERSE LENGTH=674;; (*ITAG) Solyc09g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63614809-63621319 transcript_region:SL2.40ch09:63614809..63621319+ go_terms:GO:0003700 functional_description:"Tesmin/TSO1-like CXC domain containing protein expressed (AHRD V1 *--- Q10G99_ORYSJ); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; GO:0003700 NbS00060901g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|248; (*GB) gi|225461411|ref|XP_002282248.1| (e_value=5e-72) PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera];; (*SWP) sp|Q8GUK7|RMA3_ARATH (e_value=1e-46) E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=7e-48) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc07g063200.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62961364-62962080 transcript_region:SL2.40ch07:62961364..62962080+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00021138g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|224064480|ref|XP_002301497.1| (e_value=5e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT5G38700.1 (e_value=2e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15489690-15490238 FORWARD LENGTH=182;; (*ITAG) Solyc01g079660.2.1 (e_value=1e-83) genomic_reference:SL2.40ch01 gene_region:71295004-71295940 transcript_region:SL2.40ch01:71295004..71295940- functional_description:"Long cell-linked locus protein (AHRD V1 ***- Q946U8_MAIZE)"; NbS00021138g0003.1 protein AED:0.34 eAED:0.34 QI:120|0.33|0.75|1|1|1|4|181|334; (*GB) gi|255548507|ref|XP_002515310.1| (e_value=3e-73) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25920.1 (e_value=1e-26) | Symbols: | BEST Arabidopsis thaliana protein match is: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein (TAIR:AT2G25910.2); Has 131 Blast hits to 125 proteins in 54 species: Archae - 0; Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:11054425-11055916 REVERSE LENGTH=280;; (*ITAG) Solyc01g079640.2.1 (e_value=1e-87) genomic_reference:SL2.40ch01 gene_region:71266821-71271597 transcript_region:SL2.40ch01:71266821..71271597- functional_description:"Unknown Protein (AHRD V1)"; NbS00021138g0016.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.2|0.8|0.75|0.6|5|205|309; (*GB) gi|224068460|ref|XP_002302751.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62620.1 (e_value=1e-12) | Symbols: | sucrose-phosphatase-related | chr3:23159845-23161606 FORWARD LENGTH=358;; (*ITAG) Solyc01g079630.2.1 (e_value=2e-110) genomic_reference:SL2.40ch01 gene_region:71261687-71266574 transcript_region:SL2.40ch01:71261687..71266574+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021138g0012.1 protein AED:0.11 eAED:0.11 QI:222|0.90|0.95|1|1|1|22|233|586; (*GB) gi|225437503|ref|XP_002269885.1| (e_value=0.0) PREDICTED: CTP synthase [Vitis vinifera];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=0.0) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT4G02120.1 (e_value=0.0) | Symbols: | CTP synthase family protein | chr4:940873-944097 FORWARD LENGTH=556;; (*ITAG) Solyc01g079650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00007245g0006.1 protein AED:0.38 eAED:0.38 QI:265|0.33|0.57|0.85|1|1|7|0|261; (*GB) gi|33413303|emb|CAE22480.1| (e_value=1e-95) superoxide dismutase [Fe] [Solanum lycopersicum];; (*SWP) sp|P22302|SODF_NICPL (e_value=2e-95) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G51100.1 (e_value=3e-62) | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305;; (*ITAG) Solyc06g048410.2.1 (e_value=3e-98) genomic_reference:SL2.40ch06 gene_region:27497752-27500186 transcript_region:SL2.40ch06:27497752..27500186+ go_terms:GO:0008965,GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR019833 Manganese/iron superoxide dismutase, binding site IPR001189 Manganese/iron superoxide dismutase "; GO:0008965,GO:0004784 NbS00031752g0003.1 protein AED:0.11 eAED:0.11 QI:589|1|1|1|0.66|0.75|4|302|279; (*GB) gi|297741106|emb|CBI31837.3| (e_value=9e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LYP4|BAG3_ARATH (e_value=2e-69) BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana GN=BAG3 PE=1 SV=1;; (*TAIR) AT5G07220.1 (e_value=1e-70) | Symbols: ATBAG3, BAG3 | BCL-2-associated athanogene 3 | chr5:2265545-2266720 REVERSE LENGTH=303;; (*ITAG) Solyc08g080320.2.1 (e_value=2e-156) genomic_reference:SL2.40ch08 gene_region:60810732-60813054 transcript_region:SL2.40ch08:60810732..60813054- go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00045981g0007.1 protein AED:0.17 eAED:0.20 QI:119|0.75|0.66|1|0.75|0.66|9|0|542; (*GB) gi|359492027|ref|XP_002282806.2| (e_value=7e-165) PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=6e-100) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc04g078810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61065866-61070598 transcript_region:SL2.40ch04:61065866..61070598- functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00027764g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0.5|2|0|210; (*GB) gi|359496641|ref|XP_002271939.2| (e_value=2e-79) PREDICTED: TMV resistance protein N [Vitis vinifera];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=1e-12) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT1G61105.1 (e_value=3e-71) | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188;; (*ITAG) Solyc02g078680.1.1 (e_value=4e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37924783-37926195 transcript_region:SL2.40ch02:37924783..37926195+ go_terms:GO:0031224 functional_description:"Tir, resistance protein fragment"; GO:0031224 NbS00042041g0005.1 protein AED:0.48 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|98; (*ITAG) Solyc07g055380.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60757923-60760984 transcript_region:SL2.40ch07:60757923..60760984- go_terms:GO:0004872 functional_description:"Nbs-lrr, resistance protein"; GO:0004872 NbS00042041g0002.1 protein AED:0.00 eAED:0.00 QI:145|1|0.66|1|0|0|3|566|437; (*GB) gi|115454823|ref|NP_001051012.1| (e_value=0.0) Os03g0702800 [Oryza sativa Japonica Group];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc12g010520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3517600-3518817 transcript_region:SL2.40ch12:3517600..3518817+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-1 (AHRD V1 **** B6U1I9_MAIZE); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00042041g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.75|0.75|0.66|0.5|4|0|113; (*GB) gi|302141791|emb|CBI18994.3| (e_value=3e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=2e-20) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT3G47180.1 (e_value=1e-32) | Symbols: | RING/U-box superfamily protein | chr3:17372821-17373453 REVERSE LENGTH=210;; (*ITAG) Solyc12g010500.1.1 (e_value=6e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3509143-3510865 transcript_region:SL2.40ch12:3509143..3510865+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013013g0002.1 protein AED:0.02 eAED:0.02 QI:589|1|0.66|1|0.5|0.33|3|0|370; (*GB) gi|350540664|ref|NP_001234876.1| (e_value=0.0) mitogen-activated protein kinase 8 [Solanum lycopersicum];; (*SWP) sp|Q39027|MPK7_ARATH (e_value=0.0) Mitogen-activated protein kinase 7 OS=Arabidopsis thaliana GN=MPK7 PE=2 SV=2;; (*TAIR) AT2G18170.1 (e_value=0.0) | Symbols: ATMPK7, MPK7 | MAP kinase 7 | chr2:7908178-7909374 REVERSE LENGTH=368;; (*ITAG) Solyc02g084870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42513397-42516636 transcript_region:SL2.40ch02:42513397..42516636- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase 7 (AHRD V1 ***- D9IV43_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00031210g0009.1 protein AED:0.12 eAED:0.14 QI:24|1|0.33|1|1|1|3|116|123; (*GB) gi|388502498|gb|AFK39315.1| (e_value=2e-41) unknown [Lotus japonicus];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=2e-37) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=1e-38) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=7e-36) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00031210g0008.1 protein AED:0.17 eAED:0.17 QI:502|0.91|0.92|1|0.83|0.69|13|0|595; (*GB) gi|255537421|ref|XP_002509777.1| (e_value=0.0) receptor kinase, putative [Ricinus communis];; (*SWP) sp|C0LGH8|Y1634_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1;; (*TAIR) AT1G63430.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23522896-23526451 FORWARD LENGTH=688;; (*ITAG) Solyc12g056300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47599490-47604967 transcript_region:SL2.40ch12:47599490..47604967- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00008211g0007.1 protein AED:0.20 eAED:0.21 QI:157|0.61|0.63|1|0.33|0.5|22|340|1770; (*GB) gi|359479856|ref|XP_003632363.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254568 [Vitis vinifera];; (*SWP) sp|Q8CD54|PIEZ2_MOUSE (e_value=1e-49) Piezo-type mechanosensitive ion channel component 2 OS=Mus musculus GN=Piezo2 PE=2 SV=2;; (*TAIR) AT2G48060.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462;; (*ITAG) Solyc09g074110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61291740-61320947 transcript_region:SL2.40ch09:61291740..61320947+ functional_description:"AGAP009276-PA (Fragment) (AHRD V1 *--- Q7PVH5_ANOGA)"; NbS00011672g0110.1 protein AED:0.11 eAED:0.11 QI:1505|1|1|1|0.4|0.33|6|397|63 NbS00011672g0109.1 protein AED:0.25 eAED:0.25 QI:11|1|0.66|1|0|0|3|388|76 NbS00011672g0111.1 protein AED:0.06 eAED:0.06 QI:445|0.90|0.91|1|1|1|12|195|494 NbS00048751g0011.1 protein AED:0.06 eAED:0.06 QI:61|1|1|1|1|1|2|162|244; (*GB) gi|225455533|ref|XP_002266318.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera];; (*TAIR) AT5G62280.1 (e_value=7e-50) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc03g083490.2.1 (e_value=4e-110) genomic_reference:SL2.40ch03 gene_region:46964587-46965347 transcript_region:SL2.40ch03:46964587..46965347+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00048751g0001.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.66|1|1|1|6|0|306; (*GB) gi|359806306|ref|NP_001241478.1| (e_value=0.0) hypersensitive-induced response protein 4-like [Glycine max];; (*SWP) sp|Q9FHM7|HIR4_ARATH (e_value=5e-176) Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1;; (*TAIR) AT5G51570.1 (e_value=4e-177) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:20949511-20951234 FORWARD LENGTH=292;; (*ITAG) Solyc03g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1764428-1769612 transcript_region:SL2.40ch03:1764428..1769612- go_terms:GO:0005515 functional_description:"SPFH domain / Band 7 family protein (AHRD V1 *--- Q6L4B0_SOLDE); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00021171g0004.1 protein AED:0.09 eAED:0.09 QI:236|0.8|0.83|1|0.8|0.83|6|321|179; (*GB) gi|124226|sp|P24922.1|IF5A2_NICPL (e_value=2e-114) RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2; AltName: Full=eIF-4D;; (*SWP) sp|P24922|IF5A2_NICPL (e_value=7e-116) Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1;; (*TAIR) AT1G69410.1 (e_value=5e-102) | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongation factor 5A-3 | chr1:26089301-26090194 FORWARD LENGTH=158;; (*ITAG) Solyc01g011000.2.1 (e_value=9e-112) genomic_reference:SL2.40ch01 gene_region:6848050-6851207 transcript_region:SL2.40ch01:6848050..6851207- go_terms:GO:0003743,GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A "; GO:0003743,GO:0047485 NbS00042071g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|0|1|0|89 NbS00023199g0015.1 protein AED:0.11 eAED:0.11 QI:259|0.8|0.81|0.93|0.93|1|16|0|461; (*GB) gi|359474056|ref|XP_002275095.2| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100242735 [Vitis vinifera];; (*TAIR) AT4G11990.1 (e_value=7e-78) | Symbols: | Cell cycle regulated microtubule associated protein | chr4:7186406-7189689 REVERSE LENGTH=501;; (*ITAG) Solyc08g079760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60411766-60417502 transcript_region:SL2.40ch08:60411766..60417502+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023199g0017.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|0|0.33|3|0|195; (*GB) gi|225426686|ref|XP_002281639.1| (e_value=3e-31) PREDICTED: uncharacterized protein LOC100261588 isoform 1 [Vitis vinifera];; (*TAIR) AT4G37740.1 (e_value=9e-26) | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 | chr4:17725533-17727609 REVERSE LENGTH=535;; (*ITAG) Solyc08g079800.2.1 (e_value=4e-66) genomic_reference:SL2.40ch08 gene_region:60428023-60430299 transcript_region:SL2.40ch08:60428023..60430299- go_terms:GO:0005634 functional_description:"Growth-regulating factor 12 (AHRD V1 *--- Q6AWX7_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00023199g0016.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0.25|4|0|488; (*GB) gi|225426682|ref|XP_002275215.1| (e_value=0.0) PREDICTED: guard cell S-type anion channel SLAC1 [Vitis vinifera];; (*SWP) sp|Q9LD83|SLAC1_ARATH (e_value=2e-180) Guard cell S-type anion channel SLAC1 OS=Arabidopsis thaliana GN=SLAC1 PE=1 SV=1;; (*TAIR) AT1G12480.1 (e_value=0.0) | Symbols: OZS1, SLAC1, RCD3, CDI3 | C4-dicarboxylate transporter/malic acid transport protein | chr1:4257427-4259249 REVERSE LENGTH=556;; (*ITAG) Solyc08g079770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60418069-60420206 transcript_region:SL2.40ch08:60418069..60420206- go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7KND2_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00023199g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|1|1|2|0|260; (*GB) gi|225426684|ref|XP_002281623.1| (e_value=1e-76) PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LDH3|PT112_ARATH (e_value=4e-59) Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=2 SV=1;; (*TAIR) AT1G12500.1 (e_value=3e-60) | Symbols: | Nucleotide-sugar transporter family protein | chr1:4263542-4264957 REVERSE LENGTH=361;; (*ITAG) Solyc08g079790.1.1 (e_value=5e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60425501-60426571 transcript_region:SL2.40ch08:60425501..60426571- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6TX95_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00011745g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|455; (*GB) gi|297745558|emb|CBI40723.3| (e_value=2e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YRM6|Y8219_ORYSJ (e_value=6e-89) UPF0392 protein Os08g0121900 OS=Oryza sativa subsp. japonica GN=Os08g0121900 PE=2 SV=1;; (*TAIR) AT4G37420.1 (e_value=4e-149) | Symbols: | Domain of unknown function (DUF23) | chr4:17593123-17594889 FORWARD LENGTH=588;; (*ITAG) Solyc12g094670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63172385-63173857 transcript_region:SL2.40ch12:63172385..63173857+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00001355g0011.1 protein AED:0.08 eAED:0.08 QI:73|1|0.85|1|0.83|0.71|7|175|581; (*GB) gi|356527433|ref|XP_003532315.1| (e_value=0.0) PREDICTED: laccase-17-like [Glycine max];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00001355g0008.1 protein AED:0.15 eAED:0.15 QI:91|1|1|1|0.8|0.83|6|265|242; (*GB) gi|60459405|gb|AAX20048.1| (e_value=1e-113) CPRD49-like protein [Capsicum annuum];; (*SWP) sp|Q9SRM5|CPR49_ARATH (e_value=3e-91) GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1;; (*TAIR) AT3G11210.1 (e_value=2e-92) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256;; (*ITAG) Solyc10g085170.1.1 (e_value=6e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63770842-63773387 transcript_region:SL2.40ch10:63770842..63773387+ go_terms:GO:0006629,GO:0016787 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6T5T9_MAIZE); contains Interpro domain(s) IPR013831 Esterase, SGNH hydrolase-type, subgroup "; GO:0006629,GO:0016787 NbS00015338g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|174; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=2e-32) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3Z0|R1B13_SOLDE (e_value=1e-21) Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1;; (*ITAG) Solyc04g007490.2.1 (e_value=2e-44) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00015338g0013.1 protein AED:0.39 eAED:0.45 QI:41|1|0.66|1|0.5|0.66|3|0|201; (*GB) gi|330318656|gb|AEC10988.1| (e_value=6e-99) trafficking protein [Camellia sinensis];; (*SWP) sp|Q86SZ2|TPC6B_HUMAN (e_value=3e-32) Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1;; (*TAIR) AT3G05000.1 (e_value=2e-90) | Symbols: | Transport protein particle (TRAPP) component | chr3:1387444-1388697 REVERSE LENGTH=173;; (*ITAG) Solyc04g072410.2.1 (e_value=4e-116) genomic_reference:SL2.40ch04 gene_region:57020836-57025334 transcript_region:SL2.40ch04:57020836..57025334- go_terms:GO:0005515,GO:0005215 functional_description:"Trafficking protein particle complex subunit 6B (AHRD V1 ***- D0MS35_PHYIN); contains Interpro domain(s) IPR007194 Transport protein particle (TRAPP) component "; GO:0005515,GO:0005215 NbS00003396g0016.1 protein AED:0.07 eAED:0.07 QI:287|1|1|1|1|1|11|407|312; (*GB) gi|225429234|ref|XP_002264051.1| (e_value=0.0) PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9LHE5|TO401_ARATH (e_value=8e-170) Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3;; (*TAIR) AT3G20000.1 (e_value=6e-171) | Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309;; (*ITAG) Solyc06g082800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44758185-44764570 transcript_region:SL2.40ch06:44758185..44764570- go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0015450 NbS00003396g0015.1 protein AED:0.18 eAED:0.18 QI:157|0.83|0.85|1|0.83|0.71|7|100|278; (*GB) gi|350538457|ref|NP_001233832.1| (e_value=8e-130) succinic semialdehyde reductase isofom1 [Solanum lycopersicum];; (*SWP) sp|Q5ZLS7|GLYR1_CHICK (e_value=1e-51) Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1;; (*TAIR) AT3G25530.1 (e_value=6e-114) | Symbols: GHBDH, ATGHBDH, GLYR1, GR1 | glyoxylate reductase 1 | chr3:9271949-9273514 REVERSE LENGTH=289;; (*ITAG) Solyc09g018790.2.1 (e_value=5e-133) genomic_reference:SL2.40ch09 gene_region:17001628-17004264 transcript_region:SL2.40ch09:17001628..17004264- go_terms:GO:0003858 functional_description:"Gamma hydroxybutyrate dehydrogenase-like protein (AHRD V1 **** Q84VC8_ORYSJ); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0003858 NbS00003396g0009.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|71; (*ITAG) Solyc03g115030.2.1 (e_value=6e-15) genomic_reference:SL2.40ch03 gene_region:58933142-58935283 transcript_region:SL2.40ch03:58933142..58935283+ functional_description:"Mitochondrial import receptor subunit TOM5 homolog (AHRD V1 ***- TOM5_ARATH)"; NbS00003396g0013.1 protein AED:0.13 eAED:0.13 QI:61|1|1|1|1|1|5|241|130; (*GB) gi|225435975|ref|XP_002271328.1| (e_value=3e-78) PREDICTED: oligoribonuclease [Vitis vinifera];; (*SWP) sp|Q9ZVE0|ORN_ARATH (e_value=1e-62) Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2;; (*TAIR) AT2G26970.2 (e_value=6e-64) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:11509908-11511903 REVERSE LENGTH=218;; (*ITAG) Solyc06g082810.2.1 (e_value=7e-82) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbS00003396g0018.1 protein AED:0.55 eAED:0.79 QI:0|0|0|1|1|0.5|2|0|79 NbS00003396g0110.1 protein AED:0.23 eAED:0.23 QI:0|1|0.6|1|1|0.8|5|0|203 NbS00003396g0109.1 protein AED:0.09 eAED:0.09 QI:94|1|0.75|1|0.66|0.5|4|0|314 NbS00044664g0020.1 protein AED:0.16 eAED:0.21 QI:0|0.5|0.6|1|0.75|0.8|5|0|906; (*GB) gi|225452648|ref|XP_002276468.1| (e_value=0.0) PREDICTED: alpha-mannosidase 2x [Vitis vinifera];; (*SWP) sp|Q16706|MA2A1_HUMAN (e_value=0.0) Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2;; (*TAIR) AT5G14950.1 (e_value=0.0) | Symbols: GMII, ATGMII | golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173;; (*ITAG) Solyc02g087290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44316266-44321821 transcript_region:SL2.40ch02:44316266..44321821- go_terms:GO:0004572 functional_description:"Alpha-mannosidase-like protein (AHRD V1 **** Q9LFR0_ARATH); contains Interpro domain(s) IPR000602 Glycoside hydrolase, family 38, core "; GO:0004572 NbS00044664g0015.1 protein AED:0.25 eAED:0.25 QI:55|1|1|1|1|1|3|438|91; (*GB) gi|225425886|ref|XP_002270661.1| (e_value=5e-53) PREDICTED: uncharacterized protein LOC100259604 [Vitis vinifera];; (*TAIR) AT3G48140.1 (e_value=2e-45) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc02g087330.2.1 (e_value=8e-61) genomic_reference:SL2.40ch02 gene_region:44343132-44345022 transcript_region:SL2.40ch02:44343132..44345022- functional_description:"B12D-like protein (AHRD V1 ***- D2XQY6_WOLAR); contains Interpro domain(s) IPR010530 B12D "; NbS00044664g0021.1 protein AED:0.34 eAED:0.35 QI:5|0.33|0.25|1|0.33|0.25|4|0|473; (*GB) gi|255552740|ref|XP_002517413.1| (e_value=4e-173) amino acid permease, putative [Ricinus communis];; (*SWP) sp|Q9LFR1|PTR50_ARATH (e_value=4e-146) Probable peptide/nitrate transporter At5g14940 OS=Arabidopsis thaliana GN=At5g14940 PE=2 SV=1;; (*TAIR) AT5G14940.1 (e_value=3e-147) | Symbols: | Major facilitator superfamily protein | chr5:4831748-4834312 REVERSE LENGTH=552;; (*ITAG) Solyc02g087280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44306751-44310454 transcript_region:SL2.40ch02:44306751..44310454- go_terms:GO:0080054 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054 NbS00044664g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|224055515|ref|XP_002298517.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P49641|MA2A2_HUMAN (e_value=2e-37) Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3;; (*TAIR) AT5G14950.1 (e_value=2e-156) | Symbols: GMII, ATGMII | golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173;; (*ITAG) Solyc02g087290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44316266-44321821 transcript_region:SL2.40ch02:44316266..44321821- go_terms:GO:0004572 functional_description:"Alpha-mannosidase-like protein (AHRD V1 **** Q9LFR0_ARATH); contains Interpro domain(s) IPR000602 Glycoside hydrolase, family 38, core "; GO:0004572 NbS00044664g0022.1 protein AED:0.10 eAED:0.10 QI:552|1|1|1|0.3|0.45|11|245|133; (*GB) gi|225452644|ref|XP_002281897.1| (e_value=2e-33) PREDICTED: E2F transcription factor-like E2FE [Vitis vinifera];; (*SWP) sp|Q8RWL0|E2FF_ARATH (e_value=5e-29) E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF PE=2 SV=1;; (*TAIR) AT3G48160.1 (e_value=4e-30) | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:17783641-17785688 FORWARD LENGTH=379;; (*ITAG) Solyc02g087310.2.1 (e_value=5e-75) genomic_reference:SL2.40ch02 gene_region:44330413-44334778 transcript_region:SL2.40ch02:44330413..44334778+ go_terms:GO:0003677 functional_description:"E2F transcription factor-like protein (AHRD V1 ***- Q9LFQ9_ARATH); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003677 NbS00044664g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|83283979|gb|ABC01897.1| (e_value=0.0) protein transport SEC13-like protein [Solanum tuberosum];; (*SWP) sp|Q9D1M0|SEC13_MOUSE (e_value=2e-105) Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3;; (*TAIR) AT2G30050.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc02g087300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44325520-44326428 transcript_region:SL2.40ch02:44325520..44326428+ go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00011108g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|426; (*GB) gi|255562526|ref|XP_002522269.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18830.1 (e_value=2e-33) | Symbols: ATOFP5, OFP5 | ovate family protein 5 | chr4:10337449-10338498 FORWARD LENGTH=349;; (*ITAG) Solyc02g072030.1.1 (e_value=1e-178) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35908214-35909347 transcript_region:SL2.40ch02:35908214..35909347- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U5V3_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00011108g0033.1 protein AED:0.36 eAED:0.36 QI:0|1|0.5|1|1|1|2|0|325; (*GB) gi|255562530|ref|XP_002522271.1| (e_value=1e-120) BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=2e-97) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=1e-98) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc02g071990.2.1 (e_value=4e-162) genomic_reference:SL2.40ch02 gene_region:35891251-35896029 transcript_region:SL2.40ch02:35891251..35896029- go_terms:GO:0030528 functional_description:"Brassinosteroid signaling positive regulator-related protein (Fragment) (AHRD V1 *--* B3VVE5_POPTN); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00011108g0025.1 protein AED:0.53 eAED:0.56 QI:0|0|0|0.33|1|1|3|0|100; (*ITAG) Solyc02g071940.1.1 (e_value=2e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:35875780-35876073 transcript_region:SL2.40ch02:35875780..35876073- functional_description:"Unknown Protein (AHRD V1)"; NbS00011108g0014.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|325; (*GB) gi|225443704|ref|XP_002264996.1| (e_value=4e-109) PREDICTED: CTD small phosphatase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9PTJ6|CTDSL_CHICK (e_value=2e-38) CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2;; (*TAIR) AT5G45700.1 (e_value=1e-64) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18537378-18538196 FORWARD LENGTH=272;; (*ITAG) Solyc02g071930.1.1 (e_value=8e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35872771-35873649 transcript_region:SL2.40ch02:35872771..35873649+ go_terms:GO:0008420 functional_description:"CTD small phosphatase-like protein (AHRD V1 *-** C3KI43_ANOFI); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0008420 NbS00011108g0034.1 protein AED:0.06 eAED:0.06 QI:14|1|1|1|0.33|0.5|4|48|499; (*GB) gi|255562524|ref|XP_002522268.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G17030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc02g072040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35912808-35914648 transcript_region:SL2.40ch02:35912808..35914648+ functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00011108g0004.1 protein AED:0.08 eAED:0.08 QI:880|1|0.66|1|0.5|0.33|3|0|408; (*GB) gi|5821138|dbj|BAA83711.1| (e_value=0.0) heat shock factor [Nicotiana tabacum];; (*SWP) sp|O49403|HFA4A_ARATH (e_value=3e-113) Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1;; (*TAIR) AT4G18880.1 (e_value=2e-114) | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription factor A4A | chr4:10347769-10349051 REVERSE LENGTH=401;; (*ITAG) Solyc02g072000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35903150-35904957 transcript_region:SL2.40ch02:35903150..35904957+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00011108g0009.1 protein AED:0.04 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|100; (*ITAG) Solyc02g071950.1.1 (e_value=4e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:35877359-35877661 transcript_region:SL2.40ch02:35877359..35877661+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011108g0031.1 protein AED:0.11 eAED:0.13 QI:0|1|0.4|1|0.75|0.6|5|0|774; (*GB) gi|255562532|ref|XP_002522272.1| (e_value=5e-157) zinc ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q9URW6|YIE2_SCHPO (e_value=3e-31) SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1;; (*TAIR) AT1G29800.1 (e_value=8e-153) | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr1:10432736-10435177 FORWARD LENGTH=510;; (*ITAG) Solyc02g071980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35885108-35890512 transcript_region:SL2.40ch02:35885108..35890512+ go_terms:GO:0035091 functional_description:"Actin-binding protein involved in bundling of actin filaments and endocytosis of actin cortical patches activity stimulated by Las17p contains SH3 domain similar to Rvs167p (AHRD V1 *--* D3DKW1_YEAST); contains Interpro domain(s) IPR007461 Ysc84 actin-binding domain "; GO:0035091 NbS00011108g0008.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|178; (*ITAG) Solyc02g071970.1.1 (e_value=1e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:35880932-35881528 transcript_region:SL2.40ch02:35880932..35881528+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011108g0038.1 protein AED:0.26 eAED:0.26 QI:223|0.75|0.8|1|0.75|0.8|5|0|275; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=3e-126) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q40746|NIP11_ORYSJ (e_value=2e-107) Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1;; (*TAIR) AT4G18910.1 (e_value=2e-107) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc02g071920.2.1 (e_value=2e-145) genomic_reference:SL2.40ch02 gene_region:35857616-35861426 transcript_region:SL2.40ch02:35857616..35861426- go_terms:GO:0015250 functional_description:"Transmembrane water channel Aquaporin Z (AHRD V1 **** B7VL99_VIBSL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00011108g0035.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|514; (*GB) gi|225443714|ref|XP_002265079.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Vitis vinifera];; (*SWP) sp|O49399|PP321_ARATH (e_value=3e-170) Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=2 SV=2;; (*TAIR) AT4G18840.1 (e_value=3e-171) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=545;; (*ITAG) Solyc02g072010.1.1 (e_value=4e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35906276-35907070 transcript_region:SL2.40ch02:35906276..35907070+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9E6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00002973g0009.1 protein AED:0.11 eAED:0.11 QI:597|0.71|0.75|1|0.85|0.87|8|0|1071; (*GB) gi|225463891|ref|XP_002264093.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246114 [Vitis vinifera];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=1e-48) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G42140.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:16837547-16841640 REVERSE LENGTH=1073;; (*ITAG) Solyc04g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55505152-55514903 transcript_region:SL2.40ch04:55505152..55514903- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00002973g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0.5|2|494|404; (*GB) gi|255570338|ref|XP_002526128.1| (e_value=1e-173) mitochondrial carrier protein, putative [Ricinus communis];; (*SWP) sp|Q9FHX2|MFL1_ARATH (e_value=2e-163) Protein MITOFERRINLIKE 1, chloroplastic OS=Arabidopsis thaliana GN=MFL1 PE=2 SV=1;; (*TAIR) AT5G42130.1 (e_value=2e-164) | Symbols: | Mitochondrial substrate carrier family protein | chr5:16835572-16836810 REVERSE LENGTH=412;; (*ITAG) Solyc04g071010.2.1 (e_value=8e-98) genomic_reference:SL2.40ch04 gene_region:55468553-55470387 transcript_region:SL2.40ch04:55468553..55470387- go_terms:GO:0016530 functional_description:"Mitochondrial carrier protein-like (AHRD V1 *-*- Q9FHX2_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016530 NbS00013410g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|255584530|ref|XP_002532992.1| (e_value=6e-70) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=9e-23) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT2G37740.1 (e_value=5e-26) | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 | chr2:15827706-15828620 REVERSE LENGTH=304;; (*ITAG) Solyc09g011120.1.1 (e_value=2e-122) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4477726-4478556 transcript_region:SL2.40ch09:4477726..4478556- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00038185g0012.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|3|282|343; (*GB) gi|224082832|ref|XP_002306858.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M1T1|SETH3_ARATH (e_value=0.0) Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1;; (*TAIR) AT3G54690.1 (e_value=0.0) | Symbols: | Sugar isomerase (SIS) family protein | chr3:20246586-20247810 FORWARD LENGTH=350;; (*ITAG) Solyc03g098140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53914820-53918720 transcript_region:SL2.40ch03:53914820..53918720- go_terms:GO:0005975 functional_description:"Arabinose-5-phosphate isomerase (AHRD V1 ***- B0TYU5_FRAP2); contains Interpro domain(s) IPR004800 KpsF/GutQ "; GO:0005975 NbS00038185g0019.1 protein AED:0.33 eAED:0.33 QI:174|0.81|0.83|1|0.63|0.83|12|874|373; (*GB) gi|359495111|ref|XP_002263023.2| (e_value=1e-113) PREDICTED: uncharacterized protein LOC100243690 isoform 1 [Vitis vinifera];; (*TAIR) AT1G73470.1 (e_value=3e-101) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 35 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27625208-27627604 FORWARD LENGTH=351;; (*ITAG) Solyc03g098110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53890467-53900661 transcript_region:SL2.40ch03:53890467..53900661- functional_description:"Genome sequencing data contig C315 (AHRD V1 ***- A8YHW9_MICAE)"; NbS00038185g0004.1 protein AED:0.43 eAED:0.43 QI:362|1|1|1|1|1|2|223|107; (*GB) gi|255561789|ref|XP_002521904.1| (e_value=7e-23) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g098090.1.1 (e_value=4e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53885174-53886087 transcript_region:SL2.40ch03:53885174..53886087- functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00038185g0003.1 protein AED:0.42 eAED:0.45 QI:0|1|0|1|1|1|2|0|96; (*GB) gi|255543032|ref|XP_002512579.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G57540.3 (e_value=4e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21310478-21311215 REVERSE LENGTH=103;; (*ITAG) Solyc03g098120.2.1 (e_value=4e-62) genomic_reference:SL2.40ch03 gene_region:53901216-53903729 transcript_region:SL2.40ch03:53901216..53903729- functional_description:"Unknown Protein (AHRD V1)"; NbS00038185g0016.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|92 NbS00038952g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.62|1|0.85|0.75|8|0|249; (*GB) gi|729976|sp|Q07474.1|MADS2_PETHY (e_value=4e-144) RecName: Full=Floral homeotic protein PMADS 2;; (*SWP) sp|Q07474|MADS2_PETHY (e_value=1e-145) Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1;; (*TAIR) AT5G20240.1 (e_value=2e-83) | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208;; (*ITAG) Solyc06g059970.2.1 (e_value=3e-141) genomic_reference:SL2.40ch06 gene_region:34286205-34289235 transcript_region:SL2.40ch06:34286205..34289235- go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00031273g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.83|1|1|1|6|332|646; (*GB) gi|21358787|gb|AAM47025.1| (e_value=0.0) nam-like protein 1 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-48) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G49530.1 (e_value=1e-85) | Symbols: ANAC062, NTL6, NAC062 | NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469;; (*ITAG) Solyc03g080090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45541347-45546345 transcript_region:SL2.40ch03:45541347..45546345+ go_terms:GO:0003713,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003713,GO:0003700 NbS00016042g0014.1 protein AED:0.33 eAED:0.33 QI:268|0.8|0.85|0.95|0.8|0.71|21|542|676; (*GB) gi|359475836|ref|XP_003631761.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 2 [Vitis vinifera];; (*SWP) sp|O74319|TAF73_SCHPO (e_value=4e-86) Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf73 PE=1 SV=1;; (*TAIR) AT5G25150.1 (e_value=0.0) | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669;; (*ITAG) Solyc06g065700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37513230-37528758 transcript_region:SL2.40ch06:37513230..37528758+ go_terms:GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 **-* C5M2X1_CANTT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003700 NbS00016042g0001.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|785; (*GB) gi|225454601|ref|XP_002265002.1| (e_value=0.0) PREDICTED: tuftelin-interacting protein 11-like [Vitis vinifera];; (*SWP) sp|Q66J74|TFP11_XENLA (e_value=8e-81) Tuftelin-interacting protein 11 OS=Xenopus laevis GN=tfip11 PE=2 SV=1;; (*TAIR) AT1G17070.1 (e_value=0.0) | Symbols: | GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | chr1:5837653-5840202 FORWARD LENGTH=849;; (*ITAG) Solyc10g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:753117-756148 transcript_region:SL2.40ch10:753117..756148- go_terms:GO:0005515 functional_description:"Tuftelin interacting protein 11 (AHRD V1 ***- Q8N523_HUMAN); contains Interpro domain(s) IPR014809 Tuftelin interacting protein 11 "; GO:0005515 NbS00029760g0002.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|255553735|ref|XP_002517908.1| (e_value=5e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03730.1 (e_value=5e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03600.1); Has 50 Blast hits to 50 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:931017-931520 REVERSE LENGTH=167;; (*ITAG) Solyc10g008310.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2461625-2462146 transcript_region:SL2.40ch10:2461625..2462146- functional_description:"Unknown Protein (AHRD V1)"; NbS00006454g0007.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|1|1|2|0|269; (*GB) gi|224126757|ref|XP_002319919.1| (e_value=1e-142) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20830.1 (e_value=5e-108) | Symbols: | transferases;folic acid binding | chr2:8968370-8969798 REVERSE LENGTH=297;; (*ITAG) Solyc07g054420.2.1 (e_value=2e-166) genomic_reference:SL2.40ch07 gene_region:60058632-60065064 transcript_region:SL2.40ch07:60058632..60065064+ go_terms:GO:0008152 functional_description:"Glutamate formiminotransferase (AHRD V1 ***- B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0008152 NbS00006454g0008.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|672; (*GB) gi|225447256|ref|XP_002272957.1| (e_value=9e-42) PREDICTED: uncharacterized protein LOC100246486 [Vitis vinifera];; (*ITAG) Solyc07g054410.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60054874-60057307 transcript_region:SL2.40ch07:60054874..60057307- functional_description:"Unknown Protein (AHRD V1)"; NbS00013515g0018.1 protein AED:0.25 eAED:0.26 QI:44|0|0.66|1|1|0.66|3|352|225; (*GB) gi|224055299|ref|XP_002298468.1| (e_value=5e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT4G29070.2 (e_value=1e-78) | Symbols: | Phospholipase A2 family protein | chr4:14322109-14323035 FORWARD LENGTH=259;; (*ITAG) Solyc01g008780.2.1 (e_value=7e-134) genomic_reference:SL2.40ch01 gene_region:2821916-2823182 transcript_region:SL2.40ch01:2821916..2823182+ functional_description:"Phospholipase A22 (AHRD V1 ***- B9SJ74_RICCO); contains Interpro domain(s) IPR016090 Phospholipase A2 "; NbS00013515g0017.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.57|1|1|1|7|0|463; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc01g008740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2776811-2782126 transcript_region:SL2.40ch01:2776811..2782126+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 17 (AHRD V1 **** Q6KC53_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00013515g0019.1 protein AED:0.06 eAED:0.06 QI:204|0.85|0.87|1|0.57|0.5|8|328|296; (*GB) gi|6288682|gb|AAF06696.1|AF031487_1 (e_value=1e-160) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|Q41558|HBP1C_WHEAT (e_value=2e-131) Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G06950.4 (e_value=2e-130) | Symbols: AHBP-1B, TGA2 | bZIP transcription factor family protein | chr5:2152323-2154174 FORWARD LENGTH=330;; (*ITAG) Solyc11g064950.1.1 (e_value=6e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00042564g0003.1 protein AED:0.13 eAED:0.13 QI:55|1|0.5|1|1|1|2|0|176; (*GB) gi|224117174|ref|XP_002331766.1| (e_value=8e-62) methyl binding domain protein [Populus trichocarpa];; (*SWP) sp|Q9LYB9|MBD4_ARATH (e_value=4e-55) Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1;; (*TAIR) AT3G63030.1 (e_value=3e-56) | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3:23295394-23296425 FORWARD LENGTH=186;; (*ITAG) Solyc06g084400.2.1 (e_value=2e-76) genomic_reference:SL2.40ch06 gene_region:45820654-45821484 transcript_region:SL2.40ch06:45820654..45821484+ go_terms:GO:0008327,GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 **** A9PE20_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0008327,GO:0051747 NbS00008788g0008.1 protein AED:0.17 eAED:0.17 QI:173|0.88|0.9|1|0.77|0.7|10|321|380; (*GB) gi|37983566|gb|AAR06290.1| (e_value=0.0) 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum];; (*SWP) sp|Q05728|PUR5_ARATH (e_value=2e-177) Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR5 PE=2 SV=2;; (*TAIR) AT3G55010.2 (e_value=1e-178) | Symbols: ATPURM, PUR5 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | chr3:20386818-20388549 FORWARD LENGTH=389;; (*ITAG) Solyc04g058090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54348345-54353968 transcript_region:SL2.40ch04:54348345..54353968- go_terms:GO:0008716 functional_description:"Phosphoribosylformylglycinamidine cyclo-ligase (AHRD V1 **** Q6T7F2_SOLTU); contains Interpro domain(s) IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase "; GO:0008716 NbS00008788g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|1|1|3|0|134; (*GB) gi|363808262|ref|NP_001242238.1| (e_value=1e-48) uncharacterized protein LOC100778330 precursor [Glycine max];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=4e-21) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT4G05430.1 (e_value=7e-34) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr4:2753582-2754324 FORWARD LENGTH=143;; (*ITAG) Solyc04g058080.2.1 (e_value=2e-80) genomic_reference:SL2.40ch04 gene_region:54344892-54347245 transcript_region:SL2.40ch04:54344892..54347245- functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 *-*- B6THD2_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00015675g0003.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|921; (*GB) gi|296089594|emb|CBI39413.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc09g057680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45731275-45734629 transcript_region:SL2.40ch09:45731275..45734629+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00015675g0019.1 protein AED:0.19 eAED:0.17 QI:356|0.93|0.88|1|0.87|0.94|17|300|762; (*GB) gi|296089272|emb|CBI39044.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LK39|AAE16_ARATH (e_value=0.0) Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1;; (*TAIR) AT3G23790.1 (e_value=0.0) | Symbols: AAE16 | AMP-dependent synthetase and ligase family protein | chr3:8575268-8581001 FORWARD LENGTH=722;; (*ITAG) Solyc09g092450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66882726-66893693 transcript_region:SL2.40ch09:66882726..66893693- go_terms:GO:0016208 functional_description:"Long-chain-fatty-acid CoA ligase (AHRD V1 ***- Q9LK39_ARATH); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00015675g0017.1 protein AED:0.18 eAED:0.19 QI:0|1|0.5|1|1|1|4|0|245; (*GB) gi|297745890|emb|CBI15946.3| (e_value=9e-104) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07210.1 (e_value=7e-62) | Symbols: | Ribosomal protein S18 | chr1:2215320-2216668 FORWARD LENGTH=261;; (*ITAG) Solyc10g084700.1.1 (e_value=1e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63454624-63456888 transcript_region:SL2.40ch10:63454624..63456888+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 family (AHRD V1 ***- D7KH00_ARALY); contains Interpro domain(s) IPR001648 Ribosomal protein S18 "; GO:0005840 NbS00015675g0022.1 protein AED:0.45 eAED:0.56 QI:0|0.5|0|1|0|0|3|0|81 NbS00015675g0026.1 protein AED:0.58 eAED:0.72 QI:50|0|0.25|0.75|0|0|4|0|197 NbS00015675g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.71|1|1|1|7|272|878; (*GB) gi|224069605|ref|XP_002303010.1| (e_value=9e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23740.1 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:8552077-8554730 REVERSE LENGTH=566;; (*ITAG) Solyc09g092510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66920991-66924952 transcript_region:SL2.40ch09:66920991..66924952+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015675g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|593; (*GB) gi|224055823|ref|XP_002298671.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23266|PP308_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3;; (*TAIR) AT4G14050.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8103645-8105483 REVERSE LENGTH=612;; (*ITAG) Solyc09g092440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66880740-66882572 transcript_region:SL2.40ch09:66880740..66882572+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00015675g0028.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|1|0|0|4|0|196; (*GB) gi|11934937|gb|AAG41892.1|AF279456_1 (e_value=3e-49) sesquiterpene synthase 2 [Solanum habrochaites];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=6e-48) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*ITAG) Solyc06g059930.2.1 (e_value=8e-51) genomic_reference:SL2.40ch06 gene_region:34213417-34254456 transcript_region:SL2.40ch06:34213417..34254456+ functional_description:"Sesquiterpene synthase 1 (AHRD V1 ***- Q9FQ27_SOLHA)"; NbS00015675g0029.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.66|1|1|1|6|0|455; (*GB) gi|224055825|ref|XP_002298672.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23264|SEBP1_ARATH (e_value=0.0) Selenium-binding protein 1 OS=Arabidopsis thaliana GN=SBP1 PE=1 SV=1;; (*TAIR) AT4G14030.2 (e_value=0.0) | Symbols: SBP1 | selenium-binding protein 1 | chr4:8098121-8100165 REVERSE LENGTH=490;; (*ITAG) Solyc09g092430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66876196-66880227 transcript_region:SL2.40ch09:66876196..66880227+ go_terms:GO:0008430 functional_description:"Selenium binding protein (AHRD V1 **** Q93WS1_MEDSA); contains Interpro domain(s) IPR008826 Selenium-binding protein "; GO:0008430 NbS00005369g0014.1 protein AED:0.19 eAED:0.19 QI:286|0.42|0.5|0.87|0.28|0.62|8|0|399; (*GB) gi|147786897|emb|CAN73299.1| (e_value=2e-100) hypothetical protein VITISV_005183 [Vitis vinifera];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=2e-52) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=2e-53) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc12g098620.1.1 (e_value=1e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64406763-64409366 transcript_region:SL2.40ch12:64406763..64409366+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005369g0012.1 protein AED:0.11 eAED:0.11 QI:220|0.92|1|1|0.92|0.86|15|461|1289; (*GB) gi|225433494|ref|XP_002265361.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264192 [Vitis vinifera];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=2e-98) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G23670.1 (e_value=0.0) | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated kinesin-related protein, putative | chr3:8519290-8525055 FORWARD LENGTH=1313;; (*ITAG) Solyc12g098630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64412454-64421046 transcript_region:SL2.40ch12:64412454..64421046- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LUG0_ARATH); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0007018 NbS00005369g0016.1 protein AED:0.27 eAED:0.27 QI:379|0.75|0.77|1|0.62|0.55|9|538|276; (*GB) gi|350536287|ref|NP_001234239.1| (e_value=5e-180) cyclopropyl isomerase [Solanum lycopersicum];; (*SWP) sp|Q9M643|CCI1_ARATH (e_value=4e-152) Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1;; (*TAIR) AT5G50375.1 (e_value=3e-153) | Symbols: CPI1 | cyclopropyl isomerase | chr5:20511856-20513931 FORWARD LENGTH=280;; (*ITAG) Solyc12g098640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64422393-64426637 transcript_region:SL2.40ch12:64422393..64426637- go_terms:GO:0047793 functional_description:"Cycloeucalenol cycloisomerase (AHRD V1 **-* B6TK44_MAIZE)"; GO:0047793 NbS00041429g0003.1 protein AED:0.19 eAED:0.19 QI:198|1|1|1|1|1|9|322|289; (*GB) gi|18203271|sp|Q9M5P8.1|SNAA_SOLTU (e_value=9e-178) RecName: Full=Alpha-soluble NSF attachment protein; Short=Alpha-SNAP; AltName: Full=N-ethylmaleimide-sensitive factor attachment protein alpha;; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=3e-179) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.1 (e_value=2e-148) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289;; (*ITAG) Solyc06g050770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00000163g0002.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc09g064150.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56827522-56828104 transcript_region:SL2.40ch09:56827522..56828104- go_terms:GO:0003677 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 ***- Q2R194_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00000163g0003.1 protein AED:0.40 eAED:0.47 QI:0|0.5|0.66|1|0.5|0.33|3|318|90 NbS00000163g0005.1 protein AED:0.44 eAED:0.75 QI:0|0|0|1|0|0|2|0|62 NbS00022148g0002.1 protein AED:0.37 eAED:0.63 QI:0|0|0|1|1|1|3|0|113; (*GB) gi|147774056|emb|CAN76261.1| (e_value=4e-35) hypothetical protein VITISV_018522 [Vitis vinifera];; (*TAIR) AT5G53590.1 (e_value=3e-17) | Symbols: | SAUR-like auxin-responsive protein family | chr5:21772107-21772535 FORWARD LENGTH=142;; (*ITAG) Solyc05g056440.1.1 (e_value=4e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64880146-64880463 transcript_region:SL2.40ch05:64880146..64880463- go_terms:GO:0005516 functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00019726g0004.1 protein AED:0.18 eAED:0.18 QI:132|1|1|1|0.33|0.75|4|490|180; (*GB) gi|358248974|ref|NP_001239716.1| (e_value=1e-43) uncharacterized protein LOC100816913 [Glycine max];; (*SWP) sp|Q8WXF0|SRS12_HUMAN (e_value=1e-19) Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=1 SV=1;; (*TAIR) AT3G13570.1 (e_value=2e-38) | Symbols: SCL30A, At-SCL30A | SC35-like splicing factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262;; (*ITAG) Solyc01g005820.2.1 (e_value=5e-39) genomic_reference:SL2.40ch01 gene_region:537499-541732 transcript_region:SL2.40ch01:537499..541732+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 4 (AHRD V1 *--- B6U7F9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00038305g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.62|1|1|1|8|0|1347; (*GB) gi|356530169|ref|XP_003533656.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max];; (*SWP) sp|P98204|ALA1_ARATH (e_value=0.0) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=0.0) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc10g074940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57978321-57986678 transcript_region:SL2.40ch10:57978321..57986678+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00047341g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.85|1|0.33|0.57|7|380|289; (*GB) gi|356516319|ref|XP_003526843.1| (e_value=2e-141) PREDICTED: uncharacterized protein LOC100801920 [Glycine max];; (*TAIR) AT1G43130.1 (e_value=7e-140) | Symbols: LCV2 | like COV 2 | chr1:16228661-16231158 REVERSE LENGTH=261;; (*ITAG) Solyc04g071710.2.1 (e_value=2e-172) genomic_reference:SL2.40ch04 gene_region:56272080-56279688 transcript_region:SL2.40ch04:56272080..56279688- functional_description:"Integral membrane protein (AHRD V1 **-- A8JE84_CHLRE); contains Interpro domain(s) IPR007462 Protein of unknown function DUF502 "; NbS00047341g0001.1 protein AED:0.19 eAED:0.19 QI:212|0.8|0.83|1|1|1|6|158|364; (*GB) gi|225460626|ref|XP_002264601.1| (e_value=0.0) PREDICTED: methenyltetrahydrofolate synthase domain-containing protein-like [Vitis vinifera];; (*SWP) sp|Q2KI24|MTHSD_BOVIN (e_value=6e-75) Methenyltetrahydrofolate synthase domain-containing protein OS=Bos taurus GN=MTHFSD PE=2 SV=1;; (*TAIR) AT1G76730.1 (e_value=3e-175) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr1:28803033-28804703 REVERSE LENGTH=354;; (*ITAG) Solyc04g071700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56268572-56271497 transcript_region:SL2.40ch04:56268572..56271497+ go_terms:GO:0003824 functional_description:"5-formyltetrahydrofolate cyclo-ligase family protein (AHRD V1 ***- D7KTW5_ARALY); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0003824 NbS00051476g0002.1 protein AED:0.12 eAED:0.12 QI:515|0.88|0.9|1|0.66|0.6|10|1030|230; (*GB) gi|224122232|ref|XP_002330572.1| (e_value=8e-148) predicted protein [Populus trichocarpa];; (*TAIR) AT3G13340.2 (e_value=5e-139) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:4332370-4334603 FORWARD LENGTH=447;; (*ITAG) Solyc10g005730.2.1 (e_value=2e-169) genomic_reference:SL2.40ch10 gene_region:586250-591686 transcript_region:SL2.40ch10:586250..591686- go_terms:GO:0055114 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7L1D2_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0055114 NbS00053696g0015.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|662; (*GB) gi|225452136|ref|XP_002263070.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264694 [Vitis vinifera];; (*SWP) sp|Q6R2J8|SRF8_ARATH (e_value=1e-39) Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1;; (*TAIR) AT3G01840.1 (e_value=2e-145) | Symbols: | Protein kinase superfamily protein | chr3:296582-298634 REVERSE LENGTH=654;; (*ITAG) Solyc02g094010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49244300-49246380 transcript_region:SL2.40ch02:49244300..49246380- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00053696g0013.1 protein AED:0.14 eAED:0.14 QI:209|0.75|0.55|1|0.5|0.66|9|0|1014; (*GB) gi|225452142|ref|XP_002270234.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266440 [Vitis vinifera];; (*TAIR) AT3G01810.3 (e_value=3e-141) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921;; (*ITAG) Solyc03g005060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46988-52259 transcript_region:SL2.40ch03:46988..52259- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00053696g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.4|0.33|1|0.4|0.33|6|359|749; (*GB) gi|147788411|emb|CAN69961.1| (e_value=0.0) hypothetical protein VITISV_008739 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=1e-127) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT5G14210.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:4578503-4581374 REVERSE LENGTH=775;; (*ITAG) Solyc02g093970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49227660-49232299 transcript_region:SL2.40ch02:49227660..49232299+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00053696g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|357497069|ref|XP_003618823.1| (e_value=7e-58) Calcium-binding protein CML38 [Medicago truncatula];; (*SWP) sp|Q9SRE6|CML38_ARATH (e_value=7e-45) Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=5e-46) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc02g094000.1.1 (e_value=7e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49243310-49243735 transcript_region:SL2.40ch02:49243310..49243735+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00061965g0001.1 protein AED:0.06 eAED:0.06 QI:63|1|0.5|1|0|0.5|2|0|224; (*GB) gi|225424029|ref|XP_002283623.1| (e_value=1e-98) PREDICTED: zinc finger protein 6 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=4e-33) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT1G68360.1 (e_value=4e-58) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g009180.1.1 (e_value=3e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3315685-3316332 transcript_region:SL2.40ch05:3315685..3316332- go_terms:GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 ***- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00011981g0004.1 protein AED:0.03 eAED:0.03 QI:194|1|1|1|0.5|0.66|3|190|450; (*GB) gi|297744881|emb|CBI38340.3| (e_value=5e-144) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5J4|Y3210_ARATH (e_value=6e-105) BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1;; (*TAIR) AT3G22104.1 (e_value=5e-106) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:7789814-7792179 FORWARD LENGTH=506;; (*ITAG) Solyc02g079860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38849489-38851031 transcript_region:SL2.40ch02:38849489..38851031- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00015435g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|6|388|275; (*GB) gi|255547516|ref|XP_002514815.1| (e_value=3e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G43945.1 (e_value=3e-123) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr2:18197995-18199988 REVERSE LENGTH=289;; (*ITAG) Solyc08g015620.2.1 (e_value=1e-172) genomic_reference:SL2.40ch08 gene_region:4765220-4773446 transcript_region:SL2.40ch08:4765220..4773446- functional_description:"Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (AHRD V1 **-- B6U7J5_MAIZE)"; NbS00015435g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|6|271|227; (*GB) gi|225447834|ref|XP_002270590.1| (e_value=2e-97) PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Vitis vinifera];; (*SWP) sp|Q9FY89|VP202_ARATH (e_value=7e-87) Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1;; (*TAIR) AT5G09260.1 (e_value=5e-88) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216;; (*ITAG) Solyc12g096650.1.1 (e_value=3e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63815334-63820210 transcript_region:SL2.40ch12:63815334..63820210+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 6 (AHRD V1 **-- B6TFV6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00015435g0017.1 protein AED:0.47 eAED:0.50 QI:55|0|0|1|0|0.33|3|0|203 NbS00015435g0016.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|0|0|5|0|518; (*GB) gi|255577118|ref|XP_002529443.1| (e_value=3e-103) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT5G41020.1 (e_value=3e-82) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc03g019800.2.1 (e_value=2e-149) genomic_reference:SL2.40ch03 gene_region:6726971-6728769 transcript_region:SL2.40ch03:6726971..6728769- go_terms:GO:0003677 functional_description:"Myb-like protein B (AHRD V1 *-*- MYBB_DICDI); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00048601g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|563|625; (*GB) gi|225433795|ref|XP_002273517.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266921 [Vitis vinifera];; (*TAIR) AT2G43250.1 (e_value=0.0) | Symbols: | unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17977619-17979496 FORWARD LENGTH=625;; (*ITAG) Solyc06g073490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41684992-41686917 transcript_region:SL2.40ch06:41684992..41686917- go_terms:GO:0006468 functional_description:"Unknown Protein (AHRD V1)"; GO:0006468 NbS00012442g0107.1 protein AED:0.20 eAED:0.21 QI:0|0.75|0.4|0.8|0.5|0.6|5|0|344 NbS00012442g0101.1 protein AED:0.36 eAED:0.38 QI:262|0|0.5|1|0|0.5|2|0|177 NbS00007609g0019.1 protein AED:0.06 eAED:0.07 QI:175|0.53|0.5|0.78|0.61|0.71|14|0|1215; (*GB) gi|356522206|ref|XP_003529738.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100791352 [Glycine max];; (*TAIR) AT3G21290.1 (e_value=2e-49) | Symbols: | dentin sialophosphoprotein-related | chr3:7482318-7488676 FORWARD LENGTH=1192;; (*ITAG) Solyc03g121380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63534991-63545390 transcript_region:SL2.40ch03:63534991..63545390- functional_description:"Genomic DNA chromosome 3 P1 clone MXL8 (AHRD V1 *-*- Q9LU30_ARATH); contains Interpro domain(s) IPR010844 Occludin and RNA polymerase II elongation factor ELL domain "; NbS00007609g0020.1 protein AED:0.44 eAED:0.44 QI:0|1|0.33|1|1|1|3|0|123; (*GB) gi|15224834|ref|NP_179562.1| (e_value=5e-68) 40S ribosomal protein S15a-2 [Arabidopsis thaliana];; (*SWP) sp|O82205|R15A2_ARATH (e_value=2e-69) 40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1;; (*TAIR) AT2G19720.1 (e_value=1e-70) | Symbols: rps15ab | ribosomal protein S15A B | chr2:8510223-8511258 REVERSE LENGTH=129;; (*ITAG) Solyc03g121370.2.1 (e_value=1e-86) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00007609g0021.1 protein AED:0.44 eAED:0.61 QI:0|0|0|1|0|0.25|4|0|160; (*ITAG) Solyc03g122210.1.1 (e_value=9e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64163046-64164099 transcript_region:SL2.40ch03:64163046..64164099+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007609g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.33|1|1|3|0|278; (*GB) gi|28916459|gb|AAO59435.1| (e_value=1e-131) putative developmental protein [Nicotiana benthamiana];; (*SWP) sp|O96552|CHMP1_DICDI (e_value=6e-53) Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1;; (*TAIR) AT1G17730.1 (e_value=5e-120) | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting 46.1 | chr1:6099210-6100153 FORWARD LENGTH=203;; (*ITAG) Solyc03g121360.1.1 (e_value=2e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63527142-63527753 transcript_region:SL2.40ch03:63527142..63527753+ go_terms:GO:0042802,GO:0019904 functional_description:"Charged multivesicular body protein 1b (AHRD V1 ***- B6T9W6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802,GO:0019904 NbS00007609g0022.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|0|0|5|0|265; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-17) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00007609g0023.1 protein AED:0.22 eAED:0.50 QI:0|0|0|1|0|0|2|0|59 NbS00043002g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.71|1|0.66|0.85|7|0|385; (*GB) gi|296088624|emb|CBI37615.3| (e_value=1e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-49) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G25270.1 (e_value=3e-77) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:8857726-8859909 FORWARD LENGTH=355;; (*ITAG) Solyc11g005410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:321174-323067 transcript_region:SL2.40ch11:321174..323067+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00043002g0008.1 protein AED:0.18 eAED:0.18 QI:192|1|1|1|1|1|2|282|210; (*ITAG) Solyc11g005420.1.1 (e_value=3e-21) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:323491-326089 transcript_region:SL2.40ch11:323491..326089- functional_description:"Unknown Protein (AHRD V1)"; NbS00003372g0012.1 protein AED:0.09 eAED:0.09 QI:137|0.75|1|1|0|0.2|5|191|141; (*GB) gi|431908|emb|CAA53782.1| (e_value=5e-83) transcription factor [Nicotiana tabacum];; (*SWP) sp|O64645|SOC1_ARATH (e_value=2e-32) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=2e-33) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc01g092950.2.1 (e_value=8e-49) genomic_reference:SL2.40ch01 gene_region:77256458-77258654 transcript_region:SL2.40ch01:77256458..77258654+ go_terms:GO:0003700,GO:0046982 functional_description:"MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700,GO:0046982 NbS00003372g0006.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|3|0|352; (*GB) gi|356516851|ref|XP_003527106.1| (e_value=2e-146) PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform 2 [Glycine max];; (*SWP) sp|O60231|DHX16_HUMAN (e_value=1e-119) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2;; (*TAIR) AT1G32490.2 (e_value=1e-138) | Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034;; (*ITAG) Solyc03g115390.2.1 (e_value=1e-149) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00003372g0009.1 protein AED:0.03 eAED:0.03 QI:140|1|1|1|0.87|0.77|9|154|250; (*GB) gi|7544096|dbj|BAA94287.1| (e_value=9e-148) pMADS4 [Petunia x hybrida];; (*SWP) sp|Q6EU39|MADS6_ORYSJ (e_value=4e-98) MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1;; (*TAIR) AT2G45650.1 (e_value=2e-95) | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252;; (*ITAG) Solyc01g093960.2.1 (e_value=2e-154) genomic_reference:SL2.40ch01 gene_region:77295932-77301086 transcript_region:SL2.40ch01:77295932..77301086- go_terms:GO:0005515 functional_description:"MADS box transcription factor (AHRD V1 ***- Q2NNC0_ELAGV); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00011043g0012.1 protein AED:0.16 eAED:0.16 QI:165|1|1|1|0.87|0.88|9|552|419; (*GB) gi|297808061|ref|XP_002871914.1| (e_value=0.0) ATSUG1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C5U3|PRS8A_ARATH (e_value=0.0) 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1;; (*TAIR) AT5G19990.1 (e_value=0.0) | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A ATPase 6A | chr5:6752144-6754918 FORWARD LENGTH=419;; (*ITAG) Solyc05g018590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22328150-22340843 transcript_region:SL2.40ch05:22328150..22340843- go_terms:GO:0005524,GO:0005737,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog A (AHRD V1 ***- PRS8A_ARATH); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0005737,GO:0017111 NbS00011043g0016.1 protein AED:0.07 eAED:0.07 QI:137|1|1|1|0.71|0.87|8|554|369; (*GB) gi|225445416|ref|XP_002285026.1| (e_value=0.0) PREDICTED: probable protein arginine N-methyltransferase 4.2 [Vitis vinifera];; (*SWP) sp|Q9MAT5|ANM42_ARATH (e_value=0.0) Probable protein arginine N-methyltransferase 4.2 OS=Arabidopsis thaliana GN=PRMT4.2 PE=1 SV=1;; (*TAIR) AT1G04870.2 (e_value=0.0) | Symbols: PRMT10, ATPRMT10 | protein arginine methyltransferase 10 | chr1:1373485-1375598 REVERSE LENGTH=383;; (*ITAG) Solyc08g067050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53172117-53177945 transcript_region:SL2.40ch08:53172117..53177945- go_terms:GO:0005737 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 ***- D7KE86_ARALY); contains Interpro domain(s) IPR010456 Ribosomal L11 methyltransferase "; GO:0005737 NbS00011043g0015.1 protein AED:0.30 eAED:0.47 QI:32|0.5|0.6|1|0.5|0.2|5|238|131; (*GB) gi|378750734|gb|AFC37605.1| (e_value=4e-28) serine threonine protein kinase [Piper colubrinum];; (*TAIR) AT4G38470.1 (e_value=1e-26) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc12g094410.1.1 (e_value=4e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00015207g0023.1 protein AED:0.00 eAED:0.00 QI:238|1|1|1|1|1|2|276|321; (*GB) gi|359480530|ref|XP_003632482.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 5-like [Vitis vinifera];; (*SWP) sp|Q498M4|WDR5_RAT (e_value=4e-161) WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1;; (*TAIR) AT3G49660.1 (e_value=2e-178) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18413690-18415223 FORWARD LENGTH=317;; (*ITAG) Solyc02g091790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47584642-47589198 transcript_region:SL2.40ch02:47584642..47589198+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0035064 NbS00015207g0029.1 protein AED:0.02 eAED:0.02 QI:46|0.66|0.75|1|0.66|0.75|4|32|311; (*GB) gi|359480528|ref|XP_002270448.2| (e_value=5e-37) PREDICTED: transcription factor bHLH25-like [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=4e-30) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=3e-31) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091800.2.1 (e_value=5e-102) genomic_reference:SL2.40ch02 gene_region:47590405-47591916 transcript_region:SL2.40ch02:47590405..47591916+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- Q401N5_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00015207g0024.1 protein AED:0.11 eAED:0.11 QI:604|0.93|0.93|1|0.86|0.93|16|703|824; (*GB) gi|255576027|ref|XP_002528909.1| (e_value=0.0) Chromosome-associated kinesin KIF4A, putative [Ricinus communis];; (*SWP) sp|Q2TAC6|KIF19_HUMAN (e_value=2e-96) Kinesin-like protein KIF19 OS=Homo sapiens GN=KIF19 PE=2 SV=2;; (*TAIR) AT3G49650.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18405260-18409402 REVERSE LENGTH=813;; (*ITAG) Solyc02g091780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47576842-47584021 transcript_region:SL2.40ch02:47576842..47584021+ go_terms:GO:0008017 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9SCJ4_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017 NbS00015207g0015.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|296086603|emb|CBI32238.3| (e_value=4e-46) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82248|NFYB5_ARATH (e_value=3e-38) Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1;; (*TAIR) AT2G47810.1 (e_value=2e-39) | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160;; (*ITAG) Solyc06g009010.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2953980-2954516 transcript_region:SL2.40ch06:2953980..2954516- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 *-** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00015207g0025.1 protein AED:0.28 eAED:0.31 QI:238|0.76|0.83|1|0.70|0.66|18|0|781; (*GB) gi|187611217|gb|ACD13788.1| (e_value=0.0) starch synthase V precursor [Solanum tuberosum];; (*SWP) sp|Q6MAS9|GLGA_PARUW (e_value=2e-44) Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1;; (*TAIR) AT5G65685.1 (e_value=7e-150) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26273252-26275864 REVERSE LENGTH=460;; (*ITAG) Solyc02g091760.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47559345-47561108 transcript_region:SL2.40ch02:47559345..47561108+ functional_description:"Starch synthase V (AHRD V1 ***- B2ZGM7_SOLTU); contains Interpro domain(s) IPR013534 Starch synthase catalytic region "; NbS00015207g0021.1 protein AED:0.34 eAED:0.34 QI:0|1|0.66|1|1|1|3|0|213; (*GB) gi|148616162|gb|ABQ96852.1| (e_value=2e-140) glutathione S-transferase [Solanum commersonii];; (*SWP) sp|P46423|GSTF_HYOMU (e_value=5e-140) Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1;; (*TAIR) AT2G47730.1 (e_value=2e-87) | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathione S-transferase phi 8 | chr2:19558213-19559266 FORWARD LENGTH=263;; (*ITAG) Solyc06g009020.2.1 (e_value=2e-141) genomic_reference:SL2.40ch06 gene_region:2965668-2967884 transcript_region:SL2.40ch06:2965668..2967884+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** A5YWI8_SOLCO); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00015207g0026.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0|0.5|0.33|0.25|4|0|192; (*ITAG) Solyc02g091740.2.1 (e_value=8e-17) genomic_reference:SL2.40ch02 gene_region:47555499-47557404 transcript_region:SL2.40ch02:47555499..47557404+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013256 Chromatin SPT2 "; NbS00015207g0034.1 protein AED:0.12 eAED:0.17 QI:0|0|0|0.8|0|0|5|0|335; (*GB) gi|359480516|ref|XP_002265425.2| (e_value=5e-50) PREDICTED: uncharacterized protein LOC100241361 [Vitis vinifera];; (*TAIR) AT2G22720.3 (e_value=4e-21) | Symbols: | SPT2 chromatin protein | chr2:9658182-9660532 FORWARD LENGTH=569;; (*ITAG) Solyc02g091730.1.1 (e_value=4e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:47553033-47555423 transcript_region:SL2.40ch02:47553033..47555423+ functional_description:"Os11g0296800 protein (Fragment) (AHRD V1 *-*- Q0IT79_ORYSJ)"; NbS00021193g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.16|1|0.4|0.16|6|0|443; (*GB) gi|255586073|ref|XP_002533701.1| (e_value=2e-163) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9ZT07|RKS1_ARATH (e_value=4e-85) G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3;; (*TAIR) AT1G11340.1 (e_value=2e-85) | Symbols: | S-locus lectin protein kinase family protein | chr1:3814116-3817420 REVERSE LENGTH=901;; (*ITAG) Solyc03g119340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62037083-62040211 transcript_region:SL2.40ch03:62037083..62040211+ go_terms:GO:0004672 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 **** Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00021193g0011.1 protein AED:0.27 eAED:0.27 QI:351|0.85|1|1|0.42|0.5|8|349|195; (*GB) gi|297734221|emb|CBI15468.3| (e_value=3e-114) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67060.1 (e_value=5e-99) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc03g119350.1.1 (e_value=5e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62041111-62044284 transcript_region:SL2.40ch03:62041111..62044284+ functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00027201g0010.1 protein AED:0.00 eAED:0.00 QI:134|1|1|1|1|1|3|314|148; (*ITAG) Solyc03g034230.2.1 (e_value=7e-43) genomic_reference:SL2.40ch03 gene_region:10205170-10208243 transcript_region:SL2.40ch03:10205170..10208243- functional_description:"Unknown Protein (AHRD V1)"; NbS00027201g0012.1 protein AED:0.21 eAED:0.22 QI:0|1|0.33|1|1|1|3|0|112; (*GB) gi|297841387|ref|XP_002888575.1| (e_value=4e-46) hypothetical protein ARALYDRAFT_894432 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G67080.1 (e_value=2e-48) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc02g063170.2.1 (e_value=2e-47) genomic_reference:SL2.40ch02 gene_region:29819149-29821714 transcript_region:SL2.40ch02:29819149..29821714+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00027201g0002.1 protein AED:0.33 eAED:0.33 QI:0|1|0.75|1|1|1|4|0|180; (*GB) gi|59800169|sp|P69249.1|RBS_TOBAC (e_value=9e-123) RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; AltName: Full=TSSU3-8; Flags: Precursor;; (*SWP) sp|P69249|RBS_TOBAC (e_value=3e-124) Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1;; (*TAIR) AT5G38410.1 (e_value=5e-98) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=8e-121) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00032849g0001.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0|2|0|276; (*GB) gi|467689|emb|CAA55128.1| (e_value=1e-56) chitinase/lysozyme [Nicotiana tabacum];; (*TAIR) AT4G19810.1 (e_value=3e-52) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005100.2.1 (e_value=9e-50) genomic_reference:SL2.40ch07 gene_region:123941-126335 transcript_region:SL2.40ch07:123941..126335+ go_terms:GO:0008084,GO:0008843 functional_description:"Chitinase-like protein (AHRD V1 ***- O81861_ARATH); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008084,GO:0008843 NbS00061122g0005.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.66|0|0.33|3|0|146 NbS00061122g0002.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.25|0.75|1|1|4|0|266; (*GB) gi|225425424|ref|XP_002278036.1| (e_value=3e-73) PREDICTED: REF/SRPP-like protein At1g67360-like [Vitis vinifera];; (*SWP) sp|Q9FYF7|Y1736_ARATH (e_value=1e-60) REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1;; (*TAIR) AT1G67360.1 (e_value=1e-61) | Symbols: | Rubber elongation factor protein (REF) | chr1:25237072-25237913 REVERSE LENGTH=240;; (*ITAG) Solyc05g015390.2.1 (e_value=7e-130) genomic_reference:SL2.40ch05 gene_region:10448358-10450024 transcript_region:SL2.40ch05:10448358..10450024+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00006813g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|37; (*GB) gi|57013928|ref|YP_173401.1| (e_value=4e-17) hypothetical protein NitaMp055 [Nicotiana tabacum];; (*ITAG) Solyc00g023600.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12145018-12145284 transcript_region:SL2.40ch00:12145018..12145284+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006813g0005.1 protein AED:0.21 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|151; (*GB) gi|224098928|ref|XP_002311321.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT1G26690.1 (e_value=5e-59) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214;; (*ITAG) Solyc01g010940.2.1 (e_value=5e-81) genomic_reference:SL2.40ch01 gene_region:6498396-6504024 transcript_region:SL2.40ch01:6498396..6504024+ go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00035519g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|116; (*ITAG) Solyc02g077870.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:37286482-37286907 transcript_region:SL2.40ch02:37286482..37286907- functional_description:"Unknown Protein (AHRD V1)"; NbS00056206g0005.1 protein AED:0.14 eAED:0.14 QI:10|1|1|1|0.62|0.55|9|205|400; (*GB) gi|224090503|ref|XP_002309003.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|P41777|NOLC1_RAT (e_value=2e-16) Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1;; (*ITAG) Solyc07g008330.2.1 (e_value=3e-158) genomic_reference:SL2.40ch07 gene_region:3114775-3120434 transcript_region:SL2.40ch07:3114775..3120434- functional_description:"Nucleolar and coiled-body phosphoprotein 1-like (AHRD V1 *--- B8JIY2_DANRE); contains Interpro domain(s) IPR007718 SRP40, C-terminal "; NbS00024709g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|519; (*GB) gi|350539956|ref|NP_001234847.1| (e_value=0.0) cytochrome P450 71 family protein [Solanum lycopersicum];; (*SWP) sp|P24465|C71A1_PERAE (e_value=4e-140) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT3G26310.1 (e_value=8e-114) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc09g014900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7154809-7157411 transcript_region:SL2.40ch09:7154809..7157411- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00024709g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.42|1|0.5|0.42|7|260|1129; (*GB) gi|359497186|ref|XP_003635448.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-167) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-168) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g072470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36241618-36245560 transcript_region:SL2.40ch02:36241618..36245560+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00024709g0010.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|0.5|0.66|3|0|267 NbS00006871g0008.1 protein AED:0.23 eAED:0.31 QI:79|0|0|1|0.5|0|3|0|329; (*GB) gi|357437071|ref|XP_003588811.1| (e_value=1e-13) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*TAIR) AT1G13570.1 (e_value=5e-12) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g005400.1.1 (e_value=1e-81) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:314348-315762 transcript_region:SL2.40ch05:314348..315762- functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006871g0009.1 protein AED:0.03 eAED:0.03 QI:104|0.81|0.83|1|0.63|0.58|12|681|780; (*GB) gi|225424985|ref|XP_002266813.1| (e_value=0.0) PREDICTED: protease 2-like [Vitis vinifera];; (*SWP) sp|P24555|PTRB_ECOLI (e_value=2e-77) Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2;; (*TAIR) AT1G69020.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr1:25943949-25947197 REVERSE LENGTH=757;; (*ITAG) Solyc05g011820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5047374-5053431 transcript_region:SL2.40ch05:5047374..5053431- go_terms:GO:0008236 functional_description:"Protease II (Oligopeptidase B) (AHRD V1 **-- A6GXZ7_FLAPJ); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0008236 NbC26170893g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|177; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-18) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00010184g0011.1 protein AED:0.04 eAED:0.04 QI:196|1|0.5|1|1|1|2|0|319; (*GB) gi|255570986|ref|XP_002526444.1| (e_value=1e-65) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G49920.1 (e_value=6e-54) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:20306637-20307583 REVERSE LENGTH=288;; (*ITAG) Solyc07g007140.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:1889884-1899241 transcript_region:SL2.40ch07:1889884..1899241- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00010184g0001.1 protein AED:0.06 eAED:0.06 QI:567|1|1|1|0.7|0.63|11|62|395; (*GB) gi|147770771|emb|CAN60953.1| (e_value=0.0) hypothetical protein VITISV_008875 [Vitis vinifera];; (*SWP) sp|Q93Y22|COPD_ARATH (e_value=0.0) Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2;; (*TAIR) AT5G05010.2 (e_value=0.0) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr5:1477137-1479872 FORWARD LENGTH=527;; (*ITAG) Solyc10g038120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:19612048-19616423 transcript_region:SL2.40ch10:19612048..19616423+ go_terms:GO:0005515 functional_description:"Coatomer subunit delta (AHRD V1 ***- B6TDR8_MAIZE); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0005515 NbS00010184g0009.1 protein AED:0.31 eAED:0.33 QI:0|0.66|0.61|1|0.66|0.69|13|0|539; (*GB) gi|297739512|emb|CBI29694.3| (e_value=9e-165) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0S733|REN3A_DANRE (e_value=8e-21) Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2;; (*TAIR) AT1G33980.1 (e_value=2e-92) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482;; (*ITAG) Solyc10g044450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21887500-21902534 transcript_region:SL2.40ch10:21887500..21902534+ go_terms:GO:0000166 functional_description:"Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3 "; GO:0000166 NbS00010184g0012.1 protein AED:0.15 eAED:0.39 QI:80|0|0|1|0|0|3|0|102; (*GB) gi|195542260|gb|AAR87850.2| (e_value=3e-17) fertilization-related kinase 1 [Solanum chacoense];; (*ITAG) Solyc06g065660.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00003854g0014.1 protein AED:0.05 eAED:0.05 QI:253|0.85|0.87|1|0.28|0.12|8|0|246; (*GB) gi|297746409|emb|CBI16465.3| (e_value=2e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=2e-96) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2;; (*TAIR) AT3G07160.1 (e_value=2e-97) | Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890;; (*ITAG) Solyc01g006360.2.1 (e_value=2e-105) genomic_reference:SL2.40ch01 gene_region:955781-982687 transcript_region:SL2.40ch01:955781..982687- functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00003854g0013.1 protein AED:0.18 eAED:0.18 QI:0|1|0.95|1|0.92|0.95|41|0|1996; (*GB) gi|359478773|ref|XP_002283298.2| (e_value=0.0) PREDICTED: callose synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9LXT9|CALS3_ARATH (e_value=0.0) Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3;; (*TAIR) AT5G13000.1 (e_value=0.0) | Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955;; (*ITAG) Solyc01g006370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:983795-1005620 transcript_region:SL2.40ch01:983795..1005620- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00003854g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.4|0.6|1|0.8|5|0|503; (*GB) gi|225435800|ref|XP_002285750.1| (e_value=7e-144) PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera];; (*TAIR) AT3G13460.3 (e_value=9e-86) | Symbols: ECT2 | evolutionarily conserved C-terminal region 2 | chr3:4385934-4388220 REVERSE LENGTH=508;; (*ITAG) Solyc01g028860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33625778-33629920 transcript_region:SL2.40ch01:33625778..33629920- go_terms:GO:0005515 functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005515 NbS00003192g0106.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.7|0.9|0.77|0.7|10|317|475 NbS00012438g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|1|2|315|179; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=2e-57) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=2e-57) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=9e-22) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075070.1.1 (e_value=1e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58109657-58110129 transcript_region:SL2.40ch10:58109657..58110129- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00012438g0012.1 protein AED:0.04 eAED:0.04 QI:85|0|0|1|1|1|2|0|140; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=1e-44) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=8e-45) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=7e-17) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075090.1.1 (e_value=3e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:58125039-58125556 transcript_region:SL2.40ch10:58125039..58125556- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q4A1N0_SOLLC); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00012438g0004.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|226; (*GB) gi|57013891|ref|YP_173365.1| (e_value=3e-65) hypothetical protein NitaMp017 [Nicotiana tabacum]; NbS00012438g0015.1 protein AED:0.29 eAED:0.39 QI:0|0|0|1|0|0|2|0|145; (*GB) gi|225448572|ref|XP_002277929.1| (e_value=1e-60) PREDICTED: probable leucine-rich repeat receptor-like protein kinase IMK3-like isoform 1 [Vitis vinifera];; (*SWP) sp|C0LGP9|IMK3_ARATH (e_value=2e-56) Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1;; (*TAIR) AT3G56100.1 (e_value=5e-58) | Symbols: MRLK, IMK3 | meristematic receptor-like kinase | chr3:20817074-20819517 REVERSE LENGTH=719;; (*ITAG) Solyc05g052350.2.1 (e_value=8e-69) genomic_reference:SL2.40ch05 gene_region:61751263-61754124 transcript_region:SL2.40ch05:61751263..61754124+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00030156g0010.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|244; (*GB) gi|4027893|gb|AAC96078.1| (e_value=3e-167) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q7XWU8|EXPA1_ORYSJ (e_value=4e-122) Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2;; (*TAIR) AT1G20190.1 (e_value=2e-122) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc04g081870.2.1 (e_value=1e-157) genomic_reference:SL2.40ch04 gene_region:63328271-63330920 transcript_region:SL2.40ch04:63328271..63330920- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00030156g0009.1 protein AED:0.29 eAED:0.29 QI:170|1|0.9|1|0.77|0.7|10|232|281; (*GB) gi|358248282|ref|NP_001239854.1| (e_value=2e-70) uncharacterized protein LOC100818986 [Glycine max];; (*SWP) sp|Q99JH1|RP25L_MOUSE (e_value=1e-14) Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1;; (*TAIR) AT1G76010.1 (e_value=1e-55) | Symbols: | Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350;; (*ITAG) Solyc04g071690.2.1 (e_value=4e-54) genomic_reference:SL2.40ch04 gene_region:56261458-56264577 transcript_region:SL2.40ch04:56261458..56264577- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00012758g0010.1 protein AED:0.25 eAED:0.25 QI:162|0.82|0.83|0.94|0.70|0.72|18|0|763; (*GB) gi|255578367|ref|XP_002530050.1| (e_value=2e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G13030.1 (e_value=8e-48) | Symbols: | sphere organelles protein-related | chr1:4444284-4447278 REVERSE LENGTH=608;; (*ITAG) Solyc05g013740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7049704-7062964 transcript_region:SL2.40ch05:7049704..7062964+ functional_description:"Coilin (AHRD V1 *-*- Q2TBP9_BOVIN)"; NbS00012758g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|859; (*GB) gi|37951311|dbj|BAD00043.1| (e_value=0.0) MAP kinase phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9C5S1|MKP1_ARATH (e_value=5e-171) Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1;; (*TAIR) AT3G55270.1 (e_value=4e-172) | Symbols: MKP1, ATMKP1 | mitogen-activated protein kinase phosphatase 1 | chr3:20496775-20499408 FORWARD LENGTH=784;; (*ITAG) Solyc05g013750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7063818-7066955 transcript_region:SL2.40ch05:7063818..7066955- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase 4 (AHRD V1 *-*- Q7SZF3_DANRE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00019467g0006.1 protein AED:0.00 eAED:0.00 QI:210|1|1|1|0.5|0.66|3|592|159; (*GB) gi|388497878|gb|AFK37005.1| (e_value=3e-25) unknown [Lotus japonicus];; (*TAIR) AT1G01490.2 (e_value=1e-26) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc05g049990.2.1 (e_value=9e-35) genomic_reference:SL2.40ch05 gene_region:58992635-58994973 transcript_region:SL2.40ch05:58992635..58994973+ functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8LN41_ORYSJ)"; NbS00019467g0008.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|80 NbS00015801g0015.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.44|1|0.87|0.88|9|0|668; (*GB) gi|359476012|ref|XP_003631778.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=7e-96) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc08g069180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55439154-55443169 transcript_region:SL2.40ch08:55439154..55443169- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00015801g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|1|1|4|0|552; (*GB) gi|296081800|emb|CBI20805.3| (e_value=3e-106) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGR9|Y4312_ARATH (e_value=8e-82) Probable LRR receptor-like serine/threonine-protein kinase At4g31250 OS=Arabidopsis thaliana GN=At4g31250 PE=2 SV=1;; (*TAIR) AT4G31250.1 (e_value=6e-83) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:15179201-15181751 REVERSE LENGTH=676;; (*ITAG) Solyc08g069170.1.1 (e_value=6e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55433059-55438514 transcript_region:SL2.40ch08:55433059..55438514+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00002666g0002.1 protein AED:0.14 eAED:0.15 QI:0|1|0.66|1|1|1|6|0|278; (*GB) gi|225436789|ref|XP_002270131.1| (e_value=3e-116) PREDICTED: bidirectional sugar transporter SWEET14 [Vitis vinifera];; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=9e-96) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT5G13170.1 (e_value=3e-92) | Symbols: SAG29, SWEET15, AtSWEET15 | senescence-associated gene 29 | chr5:4181331-4183171 REVERSE LENGTH=292;; (*ITAG) Solyc09g074530.2.1 (e_value=1e-143) genomic_reference:SL2.40ch09 gene_region:61857563-61859113 transcript_region:SL2.40ch09:61857563..61859113+ go_terms:GO:0016021 functional_description:"MTN3 (AHRD V1 **-- B6T9U6_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00002666g0008.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0|1|0.5|0.66|3|0|169; (*ITAG) Solyc01g073870.2.1 (e_value=6e-39) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00037373g0010.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.2|1|0.25|0.4|5|47|195; (*GB) gi|255586314|ref|XP_002533808.1| (e_value=2e-72) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G16870.1 (e_value=1e-67) | Symbols: | mitochondrial 28S ribosomal protein S29-related | chr1:5770964-5773157 REVERSE LENGTH=480;; (*ITAG) Solyc06g082370.2.1 (e_value=7e-85) genomic_reference:SL2.40ch06 gene_region:44499210-44505243 transcript_region:SL2.40ch06:44499210..44505243+ functional_description:"Os07g0202900 protein (Fragment) (AHRD V1 ***- Q0D7X1_ORYSJ); contains Interpro domain(s) IPR019368 Ribosomal protein S23/S29, mitochondrial "; NbS00037373g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc06g082370.2.1 (e_value=9e-23) genomic_reference:SL2.40ch06 gene_region:44499210-44505243 transcript_region:SL2.40ch06:44499210..44505243+ functional_description:"Os07g0202900 protein (Fragment) (AHRD V1 ***- Q0D7X1_ORYSJ); contains Interpro domain(s) IPR019368 Ribosomal protein S23/S29, mitochondrial "; NbS00037373g0011.1 protein AED:0.03 eAED:0.03 QI:259|0.5|0.33|1|0|0.33|3|0|634; (*GB) gi|359483440|ref|XP_002268763.2| (e_value=1e-118) PREDICTED: uncharacterized protein LOC100245273 [Vitis vinifera];; (*TAIR) AT1G50660.1 (e_value=7e-95) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc02g080520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39308828-39311483 transcript_region:SL2.40ch02:39308828..39311483- functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00000512g0009.1 protein AED:0.16 eAED:0.16 QI:385|1|1|1|1|1|5|218|635; (*GB) gi|350535533|ref|NP_001234711.1| (e_value=0.0) protein SUPPRESSOR OF GENE SILENCING 3 [Solanum lycopersicum];; (*SWP) sp|A5YVF1|SGS3_SOLLC (e_value=0.0) Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1;; (*TAIR) AT5G23570.1 (e_value=2e-159) | Symbols: SGS3, ATSGS3 | XS domain-containing protein / XS zinc finger domain-containing protein-related | chr5:7943621-7945874 FORWARD LENGTH=625;; (*ITAG) Solyc04g025300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:19194330-19198117 transcript_region:SL2.40ch04:19194330..19198117- functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 ***- SGS3_SOLLC)"; NbS00000512g0008.1 protein AED:0.09 eAED:0.09 QI:95|1|1|1|0.71|0.87|8|198|502; (*GB) gi|255574013|ref|XP_002527924.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-111) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G26590.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr3:9761927-9765259 REVERSE LENGTH=500;; (*ITAG) Solyc12g019320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9971385-9976838 transcript_region:SL2.40ch12:9971385..9976838+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00000263g0021.1 protein AED:0.22 eAED:0.31 QI:0|0|0.33|1|1|1|3|0|157; (*ITAG) Solyc00g019970.2.1 (e_value=1e-60) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000263g0011.1 protein AED:0.55 eAED:0.56 QI:0|0|0|0.33|1|1|6|0|295; (*GB) gi|224064299|ref|XP_002301418.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT4G09510.2 (e_value=2e-30) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021679-6023310 REVERSE LENGTH=461;; (*ITAG) Solyc00g021660.1.1 (e_value=8e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00000263g0020.1 protein AED:0.20 eAED:0.23 QI:336|0.8|0.81|1|0.8|0.72|11|478|457; (*GB) gi|359494046|ref|XP_002279828.2| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=407;; (*ITAG) Solyc07g064670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63938407-63943118 transcript_region:SL2.40ch07:63938407..63943118+ go_terms:GO:0008499 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0008499 NbS00000263g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|71 NbS00000263g0008.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|255590759|ref|XP_002535359.1| (e_value=7e-21) NADH-ubiquinone oxidoreductase mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|P80261|NDUS3_SOLTU (e_value=7e-22) NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NAD9 PE=1 SV=3;; (*ITAG) ATMG00070.1 (e_value=6e-23) | Symbols: NAD9 | NADH dehydrogenase subunit 9 | chrM:23663-24235 REVERSE LENGTH=190;; (*ITAG) Solyc00g019950.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:11799418-11799990 transcript_region:SL2.40ch00:11799418..11799990- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit C (AHRD V1 ***- NUOC_MAGSA); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00000263g0026.1 protein AED:0.27 eAED:0.60 QI:89|0|0.33|1|0.5|0.33|3|149|64 NbS00000263g0024.1 protein AED:0.22 eAED:0.43 QI:0|0|0|1|0|0|5|0|295; (*GB) gi|57014001|ref|YP_173472.1| (e_value=5e-65) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=7e-50) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=2e-52) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=2e-68) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00000263g0022.1 protein AED:0.10 eAED:0.26 QI:0|0|0|1|0|0|3|0|157; (*GB) gi|323435148|ref|YP_004222366.1| (e_value=1e-36) hypothetical protein BevumaM_p133 [Beta vulgaris subsp. maritima];; (*ITAG) Solyc00g019980.2.1 (e_value=8e-68) genomic_reference:SL2.40ch00 gene_region:11803308-11804537 transcript_region:SL2.40ch00:11803308..11804537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000263g0023.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|57014001|ref|YP_173472.1| (e_value=9e-70) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=1e-49) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=3e-53) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=1e-70) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00000263g0025.1 protein AED:0.26 eAED:0.70 QI:0|0|0|1|0|0|3|0|103; (*GB) gi|296083581|emb|CBI14791.3| (e_value=5e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=8e-20) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=6e-21) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83; NbS00048703g0001.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|76; (*GB) gi|311893257|dbj|BAJ25798.1| (e_value=2e-40) putative non-specific lipid-transfer protein type 2 subfamily [Nicotiana tabacum];; (*SWP) sp|P82353|NLTP2_PRUAR (e_value=3e-26) Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1;; (*TAIR) AT3G18280.1 (e_value=1e-29) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:6267102-6267392 FORWARD LENGTH=96;; (*ITAG) Solyc02g086310.1.1 (e_value=7e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43581253-43581537 transcript_region:SL2.40ch02:43581253..43581537- go_terms:GO:0006869 functional_description:"Lipid transfer protein (AHRD V1 ***- Q42158_ARATH); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00020084g0003.1 protein AED:0.33 eAED:0.36 QI:0|0.52|0.44|0.83|0.47|0.5|18|0|462; (*GB) gi|6625653|gb|AAF19345.1|AF129003_1 (e_value=0.0) diacylglycerol acylCoA acyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SLD2|DGAT1_ARATH (e_value=0.0) Diacylglycerol O-acyltransferase 1 OS=Arabidopsis thaliana GN=DGAT1 PE=1 SV=2;; (*TAIR) AT2G19450.1 (e_value=0.0) | Symbols: TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | membrane bound O-acyl transferase (MBOAT) family protein | chr2:8426436-8429455 FORWARD LENGTH=520;; (*ITAG) Solyc12g008970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2271798-2279705 transcript_region:SL2.40ch12:2271798..2279705- functional_description:"Diacylglycerol acyltransferase (AHRD V1 ***- Q5GKZ7_SOYBN); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; NbS00036777g0004.1 protein AED:0.30 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|60 NbS00025098g0005.1 protein AED:0.08 eAED:0.24 QI:242|1|0.5|1|1|1|2|0|125; (*GB) gi|147832587|emb|CAN77175.1| (e_value=1e-17) hypothetical protein VITISV_038216 [Vitis vinifera];; (*ITAG) Solyc03g115870.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:59525085-59526646 transcript_region:SL2.40ch03:59525085..59526646+ go_terms:GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00048278g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|0.75|1|5|0|350; (*GB) gi|359482294|ref|XP_002284087.2| (e_value=0.0) PREDICTED: GDSL esterase/lipase At5g03820-like [Vitis vinifera];; (*SWP) sp|Q9LZC5|GDL73_ARATH (e_value=1e-173) GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1;; (*TAIR) AT5G03820.1 (e_value=7e-175) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr5:1015803-1017251 REVERSE LENGTH=354;; (*ITAG) Solyc10g085740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64141402-64143991 transcript_region:SL2.40ch10:64141402..64143991- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g03820 (AHRD V1 ***- GDL73_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00048278g0011.1 protein AED:0.15 eAED:0.15 QI:271|0.58|0.53|1|0.41|0.53|13|683|999; (*GB) gi|225441066|ref|XP_002284049.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL7 [Vitis vinifera];; (*SWP) sp|Q9SCQ2|UPL7_ARATH (e_value=8e-174) E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1;; (*TAIR) AT3G53090.2 (e_value=6e-175) | Symbols: UPL7 | ubiquitin-protein ligase 7 | chr3:19679273-19684453 FORWARD LENGTH=1142;; (*ITAG) Solyc09g008700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2135770-2147539 transcript_region:SL2.40ch09:2135770..2147539- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 7 (AHRD V1 **** D7LUE6_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00048278g0010.1 protein AED:0.95 eAED:1.00 QI:0|0|0|0.33|0|0.33|3|0|73 NbS00012622g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|224079411|ref|XP_002305855.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT10|CXE18_ARATH (e_value=2e-38) Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=2 SV=1;; (*TAIR) AT5G23530.1 (e_value=1e-39) | Symbols: AtCXE18, CXE18 | carboxyesterase 18 | chr5:7933366-7934373 REVERSE LENGTH=335;; (*ITAG) Solyc10g054780.1.1 (e_value=2e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51415394-51418771 transcript_region:SL2.40ch10:51415394..51418771- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00026192g0006.1 protein AED:0.16 eAED:0.16 QI:192|0.5|0.4|0.8|1|1|5|0|251; (*GB) gi|225439922|ref|XP_002275288.1| (e_value=9e-137) PREDICTED: peroxidase 21 [Vitis vinifera];; (*SWP) sp|Q42580|PER21_ARATH (e_value=3e-122) Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1;; (*TAIR) AT2G37130.2 (e_value=5e-124) | Symbols: | Peroxidase superfamily protein | chr2:15598225-15599734 REVERSE LENGTH=296;; (*ITAG) Solyc10g084240.1.1 (e_value=3e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63188228-63190880 transcript_region:SL2.40ch10:63188228..63190880+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- C1KA92_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00026192g0010.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|0|0.33|3|0|579; (*GB) gi|195536980|dbj|BAG68210.1| (e_value=0.0) lectin receptor kinase-like protein [Nicotiana benthamiana];; (*SWP) sp|Q9LFH9|LRK81_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1;; (*TAIR) AT3G53380.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:19789204-19791351 REVERSE LENGTH=715;; (*ITAG) Solyc10g084250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63196795-63198960 transcript_region:SL2.40ch10:63196795..63198960+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00026192g0008.1 protein AED:0.33 eAED:0.33 QI:30|0.5|0.33|1|0|0|3|0|221; (*GB) gi|388506994|gb|AFK41563.1| (e_value=7e-30) unknown [Lotus japonicus];; (*ITAG) Solyc10g084230.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63185291-63186107 transcript_region:SL2.40ch10:63185291..63186107+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019030g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|85 NbS00038243g0013.1 protein AED:0.23 eAED:0.23 QI:103|0.8|0.83|1|0.6|0.66|6|352|315; (*GB) gi|359476570|ref|XP_002268619.2| (e_value=3e-109) PREDICTED: uncharacterized protein LOC100245437 [Vitis vinifera];; (*TAIR) AT2G17975.1 (e_value=2e-73) | Symbols: | zinc finger (Ran-binding) family protein | chr2:7822238-7823970 REVERSE LENGTH=268;; (*ITAG) Solyc03g033560.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:9384618-9391509 transcript_region:SL2.40ch03:9384618..9391509- go_terms:GO:0005488 functional_description:"Zinc finger protein (AHRD V1 *-*- Q4H2G2_CIOIN); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00038243g0009.1 protein AED:0.00 eAED:0.00 QI:201|1|1|1|1|1|2|153|206; (*GB) gi|225431147|ref|XP_002266236.1| (e_value=1e-53) PREDICTED: uncharacterized protein LOC100250667 [Vitis vinifera];; (*SWP) sp|O48822|Y2794_ARATH (e_value=9e-27) WEB family protein At2g17940 OS=Arabidopsis thaliana GN=At2g17940 PE=2 SV=1;; (*TAIR) AT2G17940.1 (e_value=7e-28) | Symbols: | Plant protein of unknown function (DUF827) | chr2:7802878-7803815 FORWARD LENGTH=208;; (*ITAG) Solyc03g033550.2.1 (e_value=2e-89) genomic_reference:SL2.40ch03 gene_region:9382901-9384358 transcript_region:SL2.40ch03:9382901..9384358+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00038243g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|0.66|1|1|3|0|346; (*GB) gi|255579815|ref|XP_002530745.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17990.1 (e_value=7e-124) | Symbols: | BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7827480-7828596 FORWARD LENGTH=338;; (*ITAG) Solyc02g083990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41795633-41799345 transcript_region:SL2.40ch02:41795633..41799345+ functional_description:"Calcium-dependent protein kinase CPK1 adapter protein 2-like (AHRD V1 ***- Q5Z9P7_ORYSJ)"; NbS00034530g0002.1 protein AED:0.14 eAED:0.14 QI:304|0.5|0.33|1|0.5|0.33|3|1252|162; (*GB) gi|269974852|gb|ACZ55223.1| (e_value=3e-85) S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase [Nicotiana sylvestris];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=2e-44) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT4G36470.1 (e_value=2e-38) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17215128-17216475 REVERSE LENGTH=371;; (*ITAG) Solyc04g055260.2.1 (e_value=1e-67) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00024662g0006.1 protein AED:0.13 eAED:0.13 QI:73|1|1|1|1|1|2|84|351; (*GB) gi|4929153|gb|AAD33880.1|AF141653_1 (e_value=0.0) beta-1,3-glucanase [Nicotiana tabacum];; (*SWP) sp|P52398|E13K_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G16260.1 (e_value=1e-113) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2694719-2696395 transcript_region:SL2.40ch01:2694719..2696395- go_terms:GO:0005975 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00024662g0008.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|64 NbS00006858g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|173 NbS00006858g0014.1 protein AED:0.02 eAED:0.02 QI:414|1|1|1|0|0|2|407|179; (*GB) gi|12003380|gb|AAG43547.1|AF211529_1 (e_value=4e-90) Avr9/Cf-9 rapidly elicited protein 31 [Nicotiana tabacum];; (*SWP) sp|Q09011|CAST_SOLTU (e_value=3e-76) Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G20780.1 (e_value=1e-53) | Symbols: CML42 | calmodulin like 42 | chr4:11133309-11133884 REVERSE LENGTH=191;; (*ITAG) Solyc10g074740.1.1 (e_value=3e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57697520-57698119 transcript_region:SL2.40ch10:57697520..57698119+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q9ATP2_CENCI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006858g0015.1 protein AED:0.11 eAED:0.11 QI:119|1|1|1|0.75|0.55|9|210|303; (*GB) gi|9885799|gb|AAG01532.1|AF289465_1 (e_value=0.0) cyclin-dependent kinase B1-1 [Nicotiana tabacum];; (*SWP) sp|Q38774|CDC2C_ANTMA (e_value=0.0) Cell division control protein 2 homolog C OS=Antirrhinum majus GN=CDC2C PE=2 SV=1;; (*TAIR) AT2G38620.2 (e_value=0.0) | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2 | chr2:16152551-16153866 FORWARD LENGTH=311;; (*ITAG) Solyc10g074720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57679788-57683020 transcript_region:SL2.40ch10:57679788..57683020+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006858g0010.1 protein AED:0.23 eAED:0.28 QI:6|0|0.5|1|0|0|2|0|232; (*GB) gi|255582050|ref|XP_002531822.1| (e_value=2e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G54200.1 (e_value=9e-21) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235;; (*ITAG) Solyc10g074730.1.1 (e_value=1e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57686095-57687851 transcript_region:SL2.40ch10:57686095..57687851+ functional_description:"Harpin-induced 1 (AHRD V1 ***- Q1STP6_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00024521g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|458; (*GB) gi|62241063|dbj|BAD93688.1| (e_value=0.0) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZQ98|U73C2_ARATH (e_value=2e-143) UDP-glycosyltransferase 73C2 OS=Arabidopsis thaliana GN=UGT73C2 PE=2 SV=1;; (*TAIR) AT2G36760.1 (e_value=2e-144) | Symbols: UGT73C2 | UDP-glucosyl transferase 73C2 | chr2:15413042-15414532 REVERSE LENGTH=496;; (*ITAG) Solyc10g085870.1.1 (e_value=4e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64238811-64240271 transcript_region:SL2.40ch10:64238811..64240271+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00024521g0008.1 protein AED:0.30 eAED:0.30 QI:260|0.91|0.84|1|0.91|0.92|13|0|379; (*GB) gi|255581842|ref|XP_002531721.1| (e_value=0.0) hydroxypyruvate reductase, putative [Ricinus communis];; (*SWP) sp|P13443|DHGY_CUCSA (e_value=0.0) Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1;; (*TAIR) AT1G68010.1 (e_value=0.0) | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase | chr1:25493418-25495720 FORWARD LENGTH=386;; (*ITAG) Solyc01g111630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89609244-89612993 transcript_region:SL2.40ch01:89609244..89612993+ go_terms:GO:0008266,GO:0030267 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **** GHRB_YERPS); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008266,GO:0030267 NbS00022608g0014.1 protein AED:0.13 eAED:0.13 QI:172|1|0.75|1|1|1|4|321|387; (*GB) gi|255582927|ref|XP_002532235.1| (e_value=5e-146) Sec-independent protein translocase protein tatC, putative [Ricinus communis];; (*SWP) sp|P54086|TATC_SYNY3 (e_value=4e-77) Sec-independent protein translocase protein TatC OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=tatC PE=3 SV=1;; (*TAIR) AT2G01110.1 (e_value=3e-133) | Symbols: APG2, UNE3, PGA2, TATC | Sec-independent periplasmic protein translocase | chr2:83786-85088 REVERSE LENGTH=340;; (*ITAG) Solyc05g008530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2858442-2863385 transcript_region:SL2.40ch05:2858442..2863385- go_terms:GO:0008565 functional_description:"Sec-independent protein translocase TatC (AHRD V1 ***- Q3MG73_ANAVT); contains Interpro domain(s) IPR019822 Twin arginine-targeting protein translocase, TatC "; GO:0008565 NbS00022608g0013.1 protein AED:0.53 eAED:0.58 QI:0|0.5|0.6|0.8|0.5|0.4|5|515|89 NbS00022608g0012.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|274; (*GB) gi|225424128|ref|XP_002280178.1| (e_value=2e-98) PREDICTED: cyclin-D1-binding protein 1 homolog [Vitis vinifera];; (*TAIR) AT1G22970.1 (e_value=5e-87) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130840-8132199 REVERSE LENGTH=357;; (*ITAG) Solyc05g008520.2.1 (e_value=9e-130) genomic_reference:SL2.40ch05 gene_region:2854726-2858237 transcript_region:SL2.40ch05:2854726..2858237+ functional_description:"Cyclin-D1-binding protein 1 homolog (AHRD V1 *-*- CCDB1_XENLA)"; NbS00022608g0011.1 protein AED:0.33 eAED:0.36 QI:0|0.45|0.5|1|0.36|0.41|12|239|354; (*GB) gi|218188854|gb|EEC71281.1| (e_value=1e-88) hypothetical protein OsI_03294 [Oryza sativa Indica Group];; (*SWP) sp|O93479|ORC4_XENLA (e_value=8e-17) Origin recognition complex subunit 4 OS=Xenopus laevis GN=orc4 PE=2 SV=1;; (*TAIR) AT2G01120.2 (e_value=1e-64) | Symbols: ORC4 | origin recognition complex subunit 4 | chr2:85444-88027 FORWARD LENGTH=424;; (*ITAG) Solyc05g008540.2.1 (e_value=2e-99) genomic_reference:SL2.40ch05 gene_region:2865324-2871899 transcript_region:SL2.40ch05:2865324..2871899+ go_terms:GO:0003688,GO:0000166 functional_description:"Origin recognition complex 4 subunit (AHRD V1 **** Q6EWX1_ARATH); contains Interpro domain(s) IPR016527 Origin recognition complex, subunit 4 "; GO:0003688,GO:0000166 NbS00005632g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|174; (*ITAG) Solyc10g086380.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64546761-64548302 transcript_region:SL2.40ch10:64546761..64548302+ go_terms:GO:0005515,GO:0003700 functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbS00023556g0003.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-32) hypothetical protein [Nicotiana tabacum]; NbS00007032g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|0.5|2|0|308; (*GB) gi|224092105|ref|XP_002309475.1| (e_value=7e-108) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58950.1 (e_value=1e-13) | Symbols: | Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525;; (*ITAG) Solyc08g062140.1.1 (e_value=3e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:47692672-47697995 transcript_region:SL2.40ch08:47692672..47697995- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbC24721638g0002.1 protein AED:0.10 eAED:0.24 QI:44|0|0|1|0|0|2|0|111; (*ITAG) Solyc08g029090.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:22654683-22657391 transcript_region:SL2.40ch08:22654683..22657391+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g18960 (AHRD V1 *-*- Y3896_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00016004g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.87|0.77|9|464|724; (*GB) gi|359486237|ref|XP_002264491.2| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G09600.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3108617-3111318 FORWARD LENGTH=714;; (*ITAG) Solyc01g103350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83739841-83746530 transcript_region:SL2.40ch01:83739841..83746530+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 13 (AHRD V1 *-*- CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007726g0004.1 protein AED:0.28 eAED:0.44 QI:16|0|0|1|0|0|2|0|216; (*GB) gi|255537049|ref|XP_002509591.1| (e_value=1e-32) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g007470.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00000203g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|225438545|ref|XP_002279670.1| (e_value=4e-82) PREDICTED: cytochrome P450 86B1 [Vitis vinifera];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=2e-50) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT4G39480.1 (e_value=9e-74) | Symbols: CYP96A9 | cytochrome P450, family 96, subfamily A, polypeptide 9 | chr4:18362558-18364108 FORWARD LENGTH=516;; (*ITAG) Solyc04g011940.1.1 (e_value=2e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4311733-4313253 transcript_region:SL2.40ch04:4311733..4313253- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000203g0001.1 protein AED:0.31 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|224134577|ref|XP_002321857.1| (e_value=3e-69) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=5e-28) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT4G39480.1 (e_value=3e-53) | Symbols: CYP96A9 | cytochrome P450, family 96, subfamily A, polypeptide 9 | chr4:18362558-18364108 FORWARD LENGTH=516;; (*ITAG) Solyc04g011920.1.1 (e_value=7e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4301985-4303535 transcript_region:SL2.40ch04:4301985..4303535- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002351g0016.1 protein AED:0.11 eAED:0.11 QI:156|0.91|0.92|1|0.91|0.92|13|357|1034; (*GB) gi|297737836|emb|CBI27037.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5RKH1|PRP4B_RAT (e_value=6e-135) Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus GN=Prpf4b PE=2 SV=1;; (*TAIR) AT3G25840.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:9452993-9457446 REVERSE LENGTH=935;; (*ITAG) Solyc05g009540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3747313-3754027 transcript_region:SL2.40ch05:3747313..3754027+ go_terms:GO:0006468 functional_description:"Protein kinase-like protein (AHRD V1 *-*- Q8RWN3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002351g0022.1 protein AED:0.17 eAED:0.23 QI:278|0.6|0.5|1|0.4|0.66|6|0|379; (*GB) gi|255576471|ref|XP_002529127.1| (e_value=1e-100) protein with unknown function [Ricinus communis];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=2e-20) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT1G13340.1 (e_value=2e-82) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409;; (*ITAG) Solyc05g009550.2.1 (e_value=5e-116) genomic_reference:SL2.40ch05 gene_region:3762525-3764782 transcript_region:SL2.40ch05:3762525..3764782+ functional_description:"IST1 homolog (AHRD V1 *--- IST1_HUMAN); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00002351g0004.1 protein AED:0.51 eAED:0.52 QI:0|0|0|0.28|1|1|7|0|559; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-24) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00002351g0018.1 protein AED:0.04 eAED:0.04 QI:125|1|1|1|1|1|6|295|225; (*GB) gi|224099357|ref|XP_002311452.1| (e_value=1e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FX64|HOP2_ARATH (e_value=2e-124) Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana GN=HOP2 PE=1 SV=1;; (*TAIR) AT1G13330.1 (e_value=2e-125) | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4568008-4569410 FORWARD LENGTH=226;; (*ITAG) Solyc05g009560.2.1 (e_value=1e-151) genomic_reference:SL2.40ch05 gene_region:3765181-3767193 transcript_region:SL2.40ch05:3765181..3767193- go_terms:GO:0046983 functional_description:"Homologous-pairing protein 2 homolog (AHRD V1 ***- C3KHP4_ANOFI); contains Interpro domain(s) IPR010776 Tat binding protein 1-interacting "; GO:0046983 NbS00002351g0008.1 protein AED:0.21 eAED:0.38 QI:60|-1|0|1|-1|1|1|0|73; (*GB) gi|255576477|ref|XP_002529130.1| (e_value=9e-45) Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9SX22|RRP31_ARATH (e_value=4e-45) 30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=At1g68590 PE=1 SV=1;; (*TAIR) AT1G68590.1 (e_value=3e-46) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=166;; (*ITAG) Solyc05g009570.2.1 (e_value=1e-48) genomic_reference:SL2.40ch05 gene_region:3767465-3769326 transcript_region:SL2.40ch05:3767465..3769326- go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00008001g0004.1 protein AED:0.27 eAED:0.27 QI:142|0|0.5|1|0|0|2|0|67; (*ITAG) Solyc08g076170.1.1 (e_value=1e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:57365376-57365624 transcript_region:SL2.40ch08:57365376..57365624+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034254g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|5|298|295; (*GB) gi|225457213|ref|XP_002284026.1| (e_value=4e-55) PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=7e-35) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G61030.1 (e_value=2e-51) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=4e-46) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00062000g0002.1 protein AED:0.34 eAED:0.42 QI:117|1|0.5|1|0|0|2|0|106; (*ITAG) Solyc04g005920.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:603486-604355 transcript_region:SL2.40ch04:603486..604355+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002134g0112.1 protein AED:0.04 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|218 NbS00002134g0102.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|135 NbS00002134g0115.1 protein AED:0.13 eAED:0.28 QI:0|0|0.16|0.83|0.2|0.33|6|0|261 NbS00002134g0107.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|276 NbS00001478g0003.1 protein AED:0.08 eAED:0.08 QI:572|0.77|0.9|1|0.77|0.7|10|301|658; (*GB) gi|255585933|ref|XP_002533638.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT5G38560.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:15439844-15443007 FORWARD LENGTH=681;; (*ITAG) Solyc05g010140.2.1 (e_value=8e-180) genomic_reference:SL2.40ch05 gene_region:4310407-4314499 transcript_region:SL2.40ch05:4310407..4314499- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001478g0013.1 protein AED:0.23 eAED:0.26 QI:0|0.42|0.37|1|1|1|8|0|617; (*GB) gi|225451956|ref|XP_002283177.1| (e_value=0.0) PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera];; (*SWP) sp|Q54FM3|EI2BD_DICDI (e_value=1e-82) Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1;; (*TAIR) AT5G38640.1 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642;; (*ITAG) Solyc02g089810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46084128-46088822 transcript_region:SL2.40ch02:46084128..46088822- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B delta subunit (AHRD V1 **** B6U6N6_MAIZE); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0005085 NbS00001478g0014.1 protein AED:0.38 eAED:0.43 QI:0|0.5|0.8|1|1|1|5|308|163; (*GB) gi|225451958|ref|XP_002283197.1| (e_value=3e-72) PREDICTED: cyclin-B1-2 [Vitis vinifera];; (*SWP) sp|Q0DWQ7|CCB12_ORYSJ (e_value=9e-26) Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1;; (*TAIR) AT5G38660.2 (e_value=6e-66) | Symbols: APE1 | acclimation of photosynthesis to environment | chr5:15471208-15475497 REVERSE LENGTH=431;; (*ITAG) Solyc02g089820.2.1 (e_value=6e-88) genomic_reference:SL2.40ch02 gene_region:46089148-46092029 transcript_region:SL2.40ch02:46089148..46092029- go_terms:GO:0005515 functional_description:"Proteasome maturation protein (AHRD V1 ***- A5HKJ3_RAT); contains Interpro domain(s) IPR008012 Proteasome maturation factor UMP1 "; GO:0005515 NbS00050286g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|434; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=0.0) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=5e-159) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=4e-160) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00032251g0006.1 protein AED:0.23 eAED:0.26 QI:51|0.2|0.33|1|0.2|0.16|6|0|634; (*GB) gi|255542420|ref|XP_002512273.1| (e_value=5e-60) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*TAIR) AT5G36930.2 (e_value=1e-18) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc01g102850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83299072-83303254 transcript_region:SL2.40ch01:83299072..83303254+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00003767g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|95|345; (*GB) gi|34558777|gb|AAQ75123.1| (e_value=3e-151) salicylic acid-induced protein 19 [Capsicum annuum];; (*SWP) sp|Q84TE6|NAC22_ARATH (e_value=1e-101) NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2;; (*TAIR) AT1G56010.2 (e_value=1e-102) | Symbols: NAC1, ANAC022 | NAC domain containing protein 1 | chr1:20946852-20949144 REVERSE LENGTH=324;; (*ITAG) Solyc07g066330.2.1 (e_value=7e-162) genomic_reference:SL2.40ch07 gene_region:65019493-65024400 transcript_region:SL2.40ch07:65019493..65024400- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HH13_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00003767g0002.1 protein AED:0.29 eAED:0.34 QI:0|1|0|1|1|1|2|96|221; (*GB) gi|296081595|emb|CBI20600.3| (e_value=5e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g066000.1.1 (e_value=9e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:51655187-51659294 transcript_region:SL2.40ch08:51655187..51659294- functional_description:"Binding protein (AHRD V1 ***- D7M9N9_ARALY)"; NbS00019895g0010.1 protein AED:0.27 eAED:0.33 QI:0|1|0.75|1|1|1|4|0|294; (*GB) gi|225470902|ref|XP_002263478.1| (e_value=1e-63) PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 [Vitis vinifera];; (*SWP) sp|Q94EI9|PT314_ARATH (e_value=4e-64) Probable sugar phosphate/phosphate translocator At3g14410 OS=Arabidopsis thaliana GN=At3g14410 PE=2 SV=1;; (*TAIR) AT3G14410.1 (e_value=3e-65) | Symbols: | Nucleotide/sugar transporter family protein | chr3:4815982-4817852 REVERSE LENGTH=340;; (*ITAG) Solyc10g007610.2.1 (e_value=1e-74) genomic_reference:SL2.40ch10 gene_region:1911958-1918842 transcript_region:SL2.40ch10:1911958..1918842+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00019895g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|210; (*GB) gi|225462624|ref|XP_002264437.1| (e_value=3e-94) PREDICTED: probable glutathione S-transferase [Vitis vinifera];; (*SWP) sp|P49332|GSTXC_TOBAC (e_value=5e-91) Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=1e-85) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc10g007620.1.1 (e_value=5e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1919334-1920575 transcript_region:SL2.40ch10:1919334..1920575- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** A1YW90_VITVI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00019895g0012.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0.5|0.66|3|0|170; (*GB) gi|225462624|ref|XP_002264437.1| (e_value=3e-61) PREDICTED: probable glutathione S-transferase [Vitis vinifera];; (*SWP) sp|P49332|GSTXC_TOBAC (e_value=4e-60) Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1;; (*TAIR) AT1G17180.1 (e_value=3e-58) | Symbols: ATGSTU25, GSTU25 | glutathione S-transferase TAU 25 | chr1:5872208-5872958 FORWARD LENGTH=221;; (*ITAG) Solyc10g007640.2.1 (e_value=8e-77) genomic_reference:SL2.40ch10 gene_region:1923371-1924974 transcript_region:SL2.40ch10:1923371..1924974- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** Q8GVD1_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00026449g0006.1 protein AED:0.08 eAED:0.08 QI:151|1|1|1|1|1|3|234|358; (*GB) gi|147802902|emb|CAN70740.1| (e_value=2e-148) hypothetical protein VITISV_013920 [Vitis vinifera];; (*SWP) sp|Q9SJB4|GDL34_ARATH (e_value=1e-144) GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1;; (*TAIR) AT2G04570.1 (e_value=7e-146) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350;; (*ITAG) Solyc05g043330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:55123860-55131620 transcript_region:SL2.40ch05:55123860..55131620+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g04570 (AHRD V1 ***- GDL34_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00012341g0007.1 protein AED:0.03 eAED:0.03 QI:59|1|1|1|0|0.4|5|60|494; (*GB) gi|297744505|emb|CBI37767.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=6e-139) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=5e-140) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc10g055740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52785894-52789352 transcript_region:SL2.40ch10:52785894..52789352- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9GQ40_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00012174g0009.1 protein AED:0.26 eAED:0.26 QI:99|0.5|0.57|0.85|0.33|0.42|7|1604|173; (*ITAG) Solyc03g044840.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00012174g0011.1 protein AED:0.31 eAED:0.31 QI:275|1|0.8|1|0.75|0.8|5|0|207; (*GB) gi|255560189|ref|XP_002521112.1| (e_value=6e-134) Vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|O48850|VA725_ARATH (e_value=6e-128) Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2;; (*TAIR) AT2G32670.1 (e_value=5e-129) | Symbols: ATVAMP725, VAMP725 | vesicle-associated membrane protein 725 | chr2:13857941-13859346 FORWARD LENGTH=285;; (*ITAG) Solyc06g083530.2.1 (e_value=5e-142) genomic_reference:SL2.40ch06 gene_region:45210169-45212999 transcript_region:SL2.40ch06:45210169..45212999+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00012174g0007.1 protein AED:0.23 eAED:0.26 QI:0|0.85|0.75|1|0.71|0.87|8|0|245; (*GB) gi|357505379|ref|XP_003622978.1| (e_value=8e-62) Ribonuclease P protein subunit p25 [Medicago truncatula];; (*TAIR) AT3G07030.1 (e_value=6e-62) | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405;; (*ITAG) Solyc06g083540.2.1 (e_value=4e-75) genomic_reference:SL2.40ch06 gene_region:45213604-45216612 transcript_region:SL2.40ch06:45213604..45216612- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00012174g0129.1 protein AED:0.26 eAED:0.26 QI:190|0.83|0.57|1|1|1|7|0|373 NbS00012174g0120.1 protein AED:0.24 eAED:0.29 QI:183|0.5|0.66|1|0.5|0.33|3|240|132 NbS00012174g0127.1 protein AED:0.35 eAED:0.60 QI:0|0|0|0.75|0.33|0.5|4|0|184 NbS00012174g0122.1 protein AED:0.05 eAED:0.06 QI:0|0.83|0.57|1|0.83|0.71|7|0|709 NbS00012174g0135.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|0.71|0.62|8|0|393 NbS00012174g0125.1 protein AED:0.21 eAED:0.21 QI:433|1|1|1|0.5|0.4|5|283|269 NbS00012174g0123.1 protein AED:0.02 eAED:0.23 QI:75|1|0|1|1|1|2|0|93 NbS00012174g0133.1 protein AED:0.32 eAED:0.35 QI:0|0.57|0.5|0.87|0.85|0.87|8|0|476 NbS00001984g0009.1 protein AED:0.22 eAED:0.27 QI:0|1|0.5|1|0|0.5|2|130|49 NbS00001984g0013.1 protein AED:0.35 eAED:0.42 QI:0|0|0.33|1|0.5|0.66|3|0|119; (*GB) gi|356574661|ref|XP_003555464.1| (e_value=5e-16) PREDICTED: myotubularin-related protein 2-like [Glycine max];; (*TAIR) AT3G10550.1 (e_value=1e-12) | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases II superfamily | chr3:3293210-3298452 REVERSE LENGTH=840;; (*ITAG) Solyc11g007670.1.1 (e_value=9e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00001984g0011.1 protein AED:0.29 eAED:0.59 QI:0|0.5|0|0.66|0.5|0.66|3|0|281; (*GB) gi|359486926|ref|XP_002271349.2| (e_value=1e-98) PREDICTED: myotubularin-related protein 2-like [Vitis vinifera];; (*TAIR) AT3G10550.1 (e_value=5e-80) | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases II superfamily | chr3:3293210-3298452 REVERSE LENGTH=840;; (*ITAG) Solyc11g007670.1.1 (e_value=1e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00001984g0010.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|1|1|2|0|138; (*GB) gi|515932|emb|CAA56654.1| (e_value=5e-22) E24 ASN [Spinacia oleracea];; (*TAIR) AT3G52230.1 (e_value=1e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19371325-19372397 FORWARD LENGTH=145;; (*ITAG) Solyc11g007680.1.1 (e_value=9e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1911885-1914794 transcript_region:SL2.40ch11:1911885..1914794- functional_description:"Chloroplast outer envelope protein (Omp24) (AHRD V1 *-*- Q41375_SPIOL)"; NbS00004807g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|225439309|ref|XP_002268053.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100246168 [Vitis vinifera];; (*TAIR) AT3G11890.1 (e_value=2e-25) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:3756026-3757609 FORWARD LENGTH=500;; (*ITAG) Solyc11g045270.1.1 (e_value=7e-130) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37120107-37121559 transcript_region:SL2.40ch11:37120107..37121559- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011510 Sterile alpha motif homology 2 "; NbS00004807g0101.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|105 NbS00004807g0104.1 protein AED:0.42 eAED:0.71 QI:0|0|0|1|1|1|3|0|97 NbS00041164g0002.1 protein AED:0.00 eAED:0.00 QI:513|0|0.5|1|0|0.5|2|166|113; (*GB) gi|6561156|gb|AAF16869.1|AF109693_1 (e_value=4e-45) allergen-like protein BRSn20 [Sambucus nigra];; (*SWP) sp|Q8H6L7|PHLB_PHLPR (e_value=2e-20) Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1;; (*TAIR) AT4G08685.1 (e_value=3e-32) | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159;; (*ITAG) Solyc04g054810.2.1 (e_value=4e-55) genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00043560g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|237 NbS00011955g0007.1 protein AED:0.29 eAED:0.30 QI:65|0.88|0.8|1|0.88|0.8|10|322|283; (*GB) gi|343173185|gb|AEL99295.1| (e_value=3e-162) aldose 1-epimerase family protein, partial [Silene latifolia];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=6e-34) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G66530.2 (e_value=7e-152) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:26553821-26555575 REVERSE LENGTH=307;; (*ITAG) Solyc02g085100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42669467-42673829 transcript_region:SL2.40ch02:42669467..42673829- go_terms:GO:0005515,GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7MMG0_ARALY); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0005515,GO:0047938 NbS00011955g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|356496741|ref|XP_003517224.1| (e_value=4e-132) PREDICTED: syntaxin-112-like [Glycine max];; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=3e-127) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=2e-128) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc02g085090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42668282-42669181 transcript_region:SL2.40ch02:42668282..42669181+ go_terms:GO:0005515 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005515 NbS00056741g0002.1 protein AED:0.06 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|547; (*GB) gi|255581309|ref|XP_002531465.1| (e_value=2e-93) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60380.1 (e_value=1e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). | chr3:22316913-22319144 REVERSE LENGTH=743;; (*ITAG) Solyc08g078290.1.1 (e_value=1e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59263206-59264678 transcript_region:SL2.40ch08:59263206..59264678+ functional_description:"Glycoprotein homolog (AHRD V1 *-*- Q8LCM1_ARATH)"; NbS00056741g0010.1 protein AED:0.12 eAED:0.12 QI:144|0.66|0.5|1|0.66|0.5|4|0|269; (*GB) gi|224137880|ref|XP_002326463.1| (e_value=1e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05466|HAT4_ARATH (e_value=5e-96) Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1;; (*TAIR) AT4G16780.1 (e_value=4e-97) | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein 2 | chr4:9449291-9450604 FORWARD LENGTH=284;; (*ITAG) Solyc08g078300.2.1 (e_value=2e-132) genomic_reference:SL2.40ch08 gene_region:59267579-59269933 transcript_region:SL2.40ch08:59267579..59269933- go_terms:GO:0043565,GO:0042803 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q40781_PIMBR); contains Interpro domain(s) IPR006712 HD-ZIP protein, N-terminal "; GO:0043565,GO:0042803 NbS00002210g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|361; (*GB) gi|225440572|ref|XP_002276782.1| (e_value=3e-112) PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Vitis vinifera];; (*SWP) sp|Q9LYX1|LRK82_ARATH (e_value=4e-23) L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana GN=LECRK82 PE=2 SV=1;; (*TAIR) AT5G01090.1 (e_value=9e-59) | Symbols: | Concanavalin A-like lectin family protein | chr5:33055-34116 FORWARD LENGTH=353;; (*ITAG) Solyc09g011840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5120602-5121681 transcript_region:SL2.40ch09:5120602..5121681+ go_terms:GO:0005488 functional_description:"Receptor lectin kinase-like protein (AHRD V1 *-*- Q570D3_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005488 NbS00022044g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|255764587|gb|ACU33853.1| (e_value=5e-69) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=2e-45) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=2e-46) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g005220.2.1 (e_value=3e-81) genomic_reference:SL2.40ch06 gene_region:241201-243335 transcript_region:SL2.40ch06:241201..243335- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00004132g0001.1 protein AED:0.15 eAED:0.15 QI:1807|0.6|0.66|0.83|0.8|0.66|6|408|245; (*ITAG) Solyc10g050220.1.1 (e_value=4e-73) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:43617221-43626571 transcript_region:SL2.40ch10:43617221..43626571+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004132g0006.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|73 NbS00036834g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|12|245|347; (*GB) gi|48093463|gb|AAT40108.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 2 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=1e-145) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT2G28760.3 (e_value=0.0) | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336469-12338642 REVERSE LENGTH=343;; (*ITAG) Solyc11g066150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48932337-48936317 transcript_region:SL2.40ch11:48932337..48936317+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_AERHH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00029861g0021.1 protein AED:0.05 eAED:0.05 QI:89|0.75|0.6|1|0.75|0.6|5|199|314; (*GB) gi|365818535|gb|AEX00356.1| (e_value=1e-145) IAA13 [Solanum lycopersicum];; (*SWP) sp|Q38831|IAA13_ARATH (e_value=7e-71) Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2;; (*TAIR) AT2G33310.3 (e_value=4e-72) | Symbols: IAA13 | auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=246;; (*ITAG) Solyc09g090910.1.1 (e_value=4e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65662705-65665621 transcript_region:SL2.40ch09:65662705..65665621- go_terms:GO:0005515,GO:0016564 functional_description:"Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0016564 NbS00029861g0013.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|65 NbS00029861g0020.1 protein AED:0.15 eAED:0.15 QI:279|0.92|0.86|1|0.85|0.8|15|0|450; (*GB) gi|225439231|ref|XP_002271046.1| (e_value=0.0) PREDICTED: 3-isopropylmalate dehydratase-like [Vitis vinifera];; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=0.0) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=0.0) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00029861g0019.1 protein AED:0.19 eAED:0.19 QI:89|0.86|0.87|1|1|1|16|272|517; (*GB) gi|255574875|ref|XP_002528344.1| (e_value=0.0) 3-isopropylmalate dehydratase, putative [Ricinus communis];; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=0.0) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=0.0) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00030152g0009.1 protein AED:0.13 eAED:0.13 QI:170|1|0.83|1|0.8|0.83|6|435|464; (*GB) gi|255553839|ref|XP_002517960.1| (e_value=0.0) protein phosphatase-2c, putative [Ricinus communis];; (*SWP) sp|Q9LR65|P2C01_ARATH (e_value=0.0) Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1;; (*TAIR) AT1G03590.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:894480-896257 REVERSE LENGTH=462;; (*ITAG) Solyc07g054300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59978549-59982341 transcript_region:SL2.40ch07:59978549..59982341+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00030152g0008.1 protein AED:0.06 eAED:0.06 QI:123|1|1|1|0.83|0.85|7|369|338; (*GB) gi|255553843|ref|XP_002517962.1| (e_value=4e-143) Peroxisomal membrane protein, putative [Ricinus communis];; (*SWP) sp|Q2KIY1|PXMP2_BOVIN (e_value=3e-20) Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3;; (*TAIR) AT4G03410.2 (e_value=4e-140) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:1501907-1503503 FORWARD LENGTH=361;; (*ITAG) Solyc10g008500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2620774-2624112 transcript_region:SL2.40ch10:2620774..2624112- go_terms:GO:0016021 functional_description:"Mpv17 (AHRD V1 *--- C1BTV5_9MAXI); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00030152g0003.1 protein AED:0.58 eAED:0.67 QI:0|0|0.12|0.5|1|1|8|344|253; (*ITAG) Solyc05g007720.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2202752-2203647 transcript_region:SL2.40ch05:2202752..2203647+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038068g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|79 NbS00038068g0013.1 protein AED:0.17 eAED:0.18 QI:226|0.91|0.92|1|0.66|0.76|13|0|455; (*GB) gi|359485864|ref|XP_002266383.2| (e_value=0.0) PREDICTED: vacuolar cation/proton exchanger 5-like [Vitis vinifera];; (*SWP) sp|Q8L783|CAX5_ARATH (e_value=0.0) Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1;; (*TAIR) AT1G55730.2 (e_value=0.0) | Symbols: ATCAX5, CAX5 | cation exchanger 5 | chr1:20831387-20833941 REVERSE LENGTH=441;; (*ITAG) Solyc07g056110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61298245-61304066 transcript_region:SL2.40ch07:61298245..61304066- go_terms:GO:0015369 functional_description:"Calcium/proton exchanger family protein (AHRD V1 **** C5P0K8_COCP7); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0015369 NbS00001340g0009.1 protein AED:0.11 eAED:0.14 QI:238|0.5|0.71|0.85|0.33|0.57|7|415|586; (*GB) gi|225462438|ref|XP_002264570.1| (e_value=0.0) PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera];; (*SWP) sp|Q9W590|LSG1_DROME (e_value=3e-86) Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3 PE=1 SV=1;; (*TAIR) AT1G08410.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2646307-2649106 FORWARD LENGTH=589;; (*ITAG) Solyc11g071910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52312893-52321825 transcript_region:SL2.40ch11:52312893..52321825+ go_terms:GO:0005515,GO:0005525 functional_description:"GTP-binding family protein (AHRD V1 **** D7KI21_ARALY); contains Interpro domain(s) IPR006073 GTP1/OBG "; GO:0005515,GO:0005525 NbS00001340g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|42|79; (*GB) gi|3047057|gb|AAC83146.1| (e_value=9e-44) 1-aminocyclopropane-1-carboxylate synthase [Nicotiana glutinosa];; (*SWP) sp|Q07262|1A1C_TOBAC (e_value=4e-43) 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=4e-32) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc01g095080.2.1 (e_value=9e-39) genomic_reference:SL2.40ch01 gene_region:78214067-78216996 transcript_region:SL2.40ch01:78214067..78216996- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00001340g0010.1 protein AED:0.26 eAED:0.27 QI:112|0.87|0.77|1|1|1|9|171|261; (*GB) gi|356543664|ref|XP_003540280.1| (e_value=1e-126) PREDICTED: dnaJ homolog subfamily C member 8-like [Glycine max];; (*SWP) sp|O75937|DNJC8_HUMAN (e_value=3e-22) DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2;; (*TAIR) AT5G22080.1 (e_value=8e-115) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:7310600-7313540 REVERSE LENGTH=246;; (*ITAG) Solyc11g071930.1.1 (e_value=3e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52334894-52341200 transcript_region:SL2.40ch11:52334894..52341200- go_terms:GO:0031072 functional_description:"DnaJ homolog subfamily C member 8 (AHRD V1 ***- C1BZG1_ESOLU); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00007615g0001.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|161; (*GB) gi|359486763|ref|XP_002282343.2| (e_value=3e-54) PREDICTED: protein YIPF1 homolog [Vitis vinifera];; (*TAIR) AT2G39805.2 (e_value=4e-54) | Symbols: | Integral membrane Yip1 family protein | chr2:16610216-16612353 REVERSE LENGTH=276;; (*ITAG) Solyc05g052930.2.1 (e_value=1e-60) genomic_reference:SL2.40ch05 gene_region:62256443-62263477 transcript_region:SL2.40ch05:62256443..62263477+ go_terms:GO:0017137 functional_description:"Yip1 domain family (AHRD V1 **-- C5GSW7_AJEDR); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00007615g0208.1 protein AED:0.24 eAED:0.24 QI:224|1|1|1|0|0|3|249|154 NbS00007615g0210.1 protein AED:0.26 eAED:0.26 QI:292|0.95|0.90|1|0.85|0.76|21|436|704 NbS00007615g0209.1 protein AED:0.18 eAED:0.24 QI:66|0.5|0.2|0.8|0.75|0.8|5|0|353 NbS00030068g0006.1 protein AED:0.14 eAED:0.14 QI:132|1|0.8|1|1|1|5|0|223; (*GB) gi|356527113|ref|XP_003532158.1| (e_value=1e-112) PREDICTED: 40S ribosomal protein S8-like [Glycine max];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=2e-113) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=2e-108) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=8e-118) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00030068g0008.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|378; (*GB) gi|255585630|ref|XP_002533502.1| (e_value=9e-51) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07350.1 (e_value=3e-46) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g007580.1.1 (e_value=9e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1578789-1579688 transcript_region:SL2.40ch06:1578789..1579688+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00044457g0005.1 protein AED:0.23 eAED:0.23 QI:278|1|0.71|1|0.66|0.57|7|0|665; (*GB) gi|225448390|ref|XP_002271416.1| (e_value=0.0) PREDICTED: arginyl-tRNA--protein transferase 1-like [Vitis vinifera];; (*SWP) sp|Q9ZT48|ATE1_ARATH (e_value=0.0) Arginyl-tRNA--protein transferase 1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=2;; (*TAIR) AT5G05700.1 (e_value=0.0) | Symbols: ATE1, DLS1, ATATE1 | arginine-tRNA protein transferase 1 | chr5:1712950-1715639 REVERSE LENGTH=632;; (*ITAG) Solyc06g051760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31855291-31863999 transcript_region:SL2.40ch06:31855291..31863999- go_terms:GO:0004057 functional_description:"Arginyl-tRNA--protein transferase 1 (AHRD V1 ***- B9SLM9_RICCO); contains Interpro domain(s) IPR017137 Arginine-tRNA-protein transferase 1, eukaryotic "; GO:0004057 NbS00017214g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|144; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=1e-82) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=8e-75) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.1 (e_value=6e-76) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15014070 REVERSE LENGTH=497;; (*ITAG) Solyc08g078650.2.1 (e_value=1e-89) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00017214g0004.1 protein AED:0.36 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|97; (*TAIR) AT5G64350.1 (e_value=1e-13) | Symbols: FKBP12, ATFKBP12 | FK506-binding protein 12 | chr5:25734810-25735990 REVERSE LENGTH=112;; (*ITAG) Solyc01g105710.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:85539000-85541482 transcript_region:SL2.40ch01:85539000..85541482- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- A6RSK7_BOTFB); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00017214g0009.1 protein AED:0.08 eAED:0.08 QI:48|0.16|0.28|1|0.16|0.28|7|0|535; (*GB) gi|255582749|ref|XP_002532151.1| (e_value=6e-96) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G73850.1 (e_value=4e-87) | Symbols: | Protein of unknown function (DUF1666) | chr1:27767375-27770386 FORWARD LENGTH=635;; (*ITAG) Solyc12g036500.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31632150-31636010 transcript_region:SL2.40ch12:31632150..31636010+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00025611g0001.1 protein AED:0.23 eAED:0.33 QI:0|0.25|0|1|1|1|5|0|506; (*GB) gi|296086469|emb|CBI32058.3| (e_value=1e-61) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27180.1 (e_value=3e-33) | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr1:9439859-9445818 FORWARD LENGTH=1556;; (*ITAG) Solyc05g006620.2.1 (e_value=3e-106) genomic_reference:SL2.40ch05 gene_region:1267542-1277499 transcript_region:SL2.40ch05:1267542..1277499- go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 NbS00059894g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|255558398|ref|XP_002520225.1| (e_value=3e-19) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=2e-17) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=1e-18) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc08g081090.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61366803-61368353 transcript_region:SL2.40ch08:61366803..61368353+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 7 (AHRD V1 ***- B5X4W8_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00059894g0009.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|238; (*GB) gi|224137726|ref|XP_002322629.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=2e-44) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=2e-45) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc08g081090.1.1 (e_value=5e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61366803-61368353 transcript_region:SL2.40ch08:61366803..61368353+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 7 (AHRD V1 ***- B5X4W8_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00059894g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|225462303|ref|XP_002265206.1| (e_value=1e-25) PREDICTED: solute carrier family 22 member 21-like [Vitis vinifera];; (*SWP) sp|O64515|OCT2_ARATH (e_value=5e-21) Organic cation/carnitine transporter 2 OS=Arabidopsis thaliana GN=OCT2 PE=2 SV=1;; (*TAIR) AT1G79360.1 (e_value=4e-22) | Symbols: ATOCT2, OCT2, 2-Oct | organic cation/carnitine transporter 2 | chr1:29854140-29855723 REVERSE LENGTH=527;; (*ITAG) Solyc08g081090.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61366803-61368353 transcript_region:SL2.40ch08:61366803..61368353+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 7 (AHRD V1 ***- B5X4W8_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00005792g0019.1 protein AED:0.01 eAED:0.01 QI:4|1|0.85|1|0.66|0.57|7|542|1556; (*GB) gi|356502634|ref|XP_003520123.1| (e_value=1e-74) PREDICTED: uncharacterized protein LOC100816942 [Glycine max];; (*SWP) sp|Q9SU08|AUXI1_ARATH (e_value=1e-52) Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2;; (*TAIR) AT4G36520.1 (e_value=2e-63) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17230589-17235435 REVERSE LENGTH=1422;; (*ITAG) Solyc04g080600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62306723-62313603 transcript_region:SL2.40ch04:62306723..62313603+ go_terms:GO:0031072 functional_description:"UBA domain-containing protein (AHRD V1 *--- C9SNY0_VERA1); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00005792g0018.1 protein AED:0.22 eAED:0.22 QI:210|1|0.87|1|1|1|8|0|368; (*GB) gi|118486455|gb|ABK95067.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q55480|YZ37_SYNY3 (e_value=7e-18) Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0537 PE=3 SV=1;; (*TAIR) AT1G19600.1 (e_value=2e-177) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:6779085-6780898 FORWARD LENGTH=355;; (*ITAG) Solyc04g080580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62290777-62294618 transcript_region:SL2.40ch04:62290777..62294618+ go_terms:GO:0016301 functional_description:"Kinase PfkB family (AHRD V1 **** D4WID3_BACOV); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00005792g0022.1 protein AED:0.33 eAED:0.33 QI:179|1|0.8|1|0.75|0.8|5|0|273; (*GB) gi|356510165|ref|XP_003523810.1| (e_value=5e-169) PREDICTED: uncharacterized protein DDB_G0288155-like [Glycine max];; (*SWP) sp|Q9C6B3|GCA2_ARATH (e_value=2e-161) Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1;; (*TAIR) AT1G47260.1 (e_value=2e-162) | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydrase 2 | chr1:17321384-17323347 REVERSE LENGTH=278;; (*ITAG) Solyc04g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62282687-62288606 transcript_region:SL2.40ch04:62282687..62288606+ go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_CLOB6); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00005792g0020.1 protein AED:0.11 eAED:0.11 QI:148|1|0.5|1|0|1|2|0|274; (*GB) gi|22947842|gb|AAN07899.1| (e_value=1e-177) 20S proteasome alpha 6 subunit [Nicotiana benthamiana];; (*SWP) sp|P34066|PSA1A_ARATH (e_value=5e-154) Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3;; (*TAIR) AT5G42790.1 (e_value=3e-155) | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha subunit F1 | chr5:17159270-17160975 REVERSE LENGTH=278;; (*ITAG) Solyc04g080590.2.1 (e_value=8e-176) genomic_reference:SL2.40ch04 gene_region:62295025-62299348 transcript_region:SL2.40ch04:62295025..62299348- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q8H1Y2_NICBE); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00005792g0026.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.2|1|0.5|0.6|5|0|282; (*GB) gi|225458227|ref|XP_002281919.1| (e_value=0.0) PREDICTED: ornithine carbamoyltransferase, chloroplastic [Vitis vinifera];; (*SWP) sp|O50039|OTC_ARATH (e_value=9e-172) Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2;; (*TAIR) AT1G75330.1 (e_value=7e-173) | Symbols: OTC | ornithine carbamoyltransferase | chr1:28266457-28268383 REVERSE LENGTH=375;; (*ITAG) Solyc04g080610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62314021-62318683 transcript_region:SL2.40ch04:62314021..62318683- go_terms:GO:0004585 functional_description:"Ornithine carbamoyltransferase (AHRD V1 **** Q9SEX4_CANLI); contains Interpro domain(s) IPR002292 Ornithine carbamoyltransferase "; GO:0004585 NbS00010427g0021.1 protein AED:0.02 eAED:0.06 QI:0|0.8|0.5|1|0.8|0.5|6|0|254; (*GB) gi|224055015|ref|XP_002298402.1| (e_value=3e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19855.1 (e_value=6e-53) | Symbols: | Chaperonin-like RbcX protein | chr5:6712166-6713445 REVERSE LENGTH=203;; (*ITAG) Solyc01g087190.2.1 (e_value=4e-119) genomic_reference:SL2.40ch01 gene_region:73882628-73887074 transcript_region:SL2.40ch01:73882628..73887074- functional_description:"Chaperonin-like protein (AHRD V1 *-*- Q2LJI6_9NOSO); contains Interpro domain(s) IPR003435 Chaperonin-like RbcX "; NbS00010427g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|359487372|ref|XP_002275324.2| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100249968 [Vitis vinifera];; (*ITAG) Solyc01g087180.2.1 (e_value=4e-33) genomic_reference:SL2.40ch01 gene_region:73880157-73881845 transcript_region:SL2.40ch01:73880157..73881845- functional_description:"Unknown Protein (AHRD V1)"; NbS00010427g0015.1 protein AED:0.20 eAED:0.22 QI:0|0.33|0|1|1|1|4|0|602; (*GB) gi|190607693|gb|ACE79505.1| (e_value=3e-70) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z0|R1B13_SOLDE (e_value=6e-49) Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=9e-44) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc01g087200.2.1 (e_value=4e-170) genomic_reference:SL2.40ch01 gene_region:73888976-73892212 transcript_region:SL2.40ch01:73888976..73892212- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00010427g0003.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|1|1|3|0|780; (*GB) gi|294440421|gb|ADE74631.1| (e_value=0.0) unknown [Vitis vinifera];; (*SWP) sp|P93755|C3H30_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g079120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60053436-60055547 transcript_region:SL2.40ch10:60053436..60055547- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 **-- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00010427g0017.1 protein AED:0.37 eAED:0.40 QI:2|0.5|0|1|1|1|3|0|396; (*GB) gi|33186651|gb|AAP97495.1| (e_value=0.0) cellulose synthase [Solanum tuberosum];; (*SWP) sp|Q84ZN6|CESA8_ORYSJ (e_value=0.0) Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1;; (*TAIR) AT5G05170.1 (e_value=0.0) | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065;; (*ITAG) Solyc01g087210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73892563-73901116 transcript_region:SL2.40ch01:73892563..73901116- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6XP46_SOLTU); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00010427g0018.1 protein AED:0.54 eAED:0.56 QI:0|0|0|1|0|0|2|0|101; (*ITAG) Solyc01g087200.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:73888976-73892212 transcript_region:SL2.40ch01:73888976..73892212- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00010427g0116.1 protein AED:0.04 eAED:0.04 QI:0|0.91|0.69|1|0.41|0.53|13|0|1224 NbS00010427g0115.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|149 NbS00010427g0117.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.75|0.66|0.75|4|0|274 NbS00056288g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.81|0.76|0.94|0.81|0.76|17|0|1338; (*GB) gi|359485856|ref|XP_002267033.2| (e_value=7e-155) PREDICTED: uncharacterized protein LOC100244248 [Vitis vinifera];; (*TAIR) AT2G04235.1 (e_value=5e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). | chr2:1449414-1455018 FORWARD LENGTH=1253;; (*ITAG) Solyc07g045170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55586742-55604373 transcript_region:SL2.40ch07:55586742..55604373+ functional_description:"184 (Fragment) (AHRD V1 *-*- O80379_DAUCA)"; NbS00029338g0002.1 protein AED:0.23 eAED:0.23 QI:1204|0.87|0.88|1|0|0.22|9|232|608; (*GB) gi|28974687|gb|AAO61490.1| (e_value=0.0) arm repeat-containing protein [Nicotiana tabacum];; (*SWP) sp|O22193|PUB4_ARATH (e_value=0.0) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G23140.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9849105 REVERSE LENGTH=829;; (*ITAG) Solyc12g100000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65255243-65258115 transcript_region:SL2.40ch12:65255243..65258115+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00061419g0003.1 protein AED:0.23 eAED:0.23 QI:366|1|1|1|1|1|4|278|111; (*GB) gi|388512091|gb|AFK44107.1| (e_value=1e-62) unknown [Lotus japonicus];; (*SWP) sp|Q4V8W7|UBTD1_DANRE (e_value=5e-28) Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1;; (*TAIR) AT1G53400.1 (e_value=3e-63) | Symbols: | Ubiquitin domain-containing protein | chr1:19925009-19926400 FORWARD LENGTH=114;; (*ITAG) Solyc03g006020.2.1 (e_value=2e-74) genomic_reference:SL2.40ch03 gene_region:687640-692338 transcript_region:SL2.40ch03:687640..692338- go_terms:GO:0005515 functional_description:"Ubiquitin domain containing 1 (AHRD V1 ***- B6T693_MAIZE)"; GO:0005515 NbS00028157g0007.1 protein AED:0.00 eAED:0.00 QI:599|1|1|1|0.66|0.25|4|284|179; (*GB) gi|356506028|ref|XP_003521790.1| (e_value=1e-84) PREDICTED: zinc finger CCCH domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q6K4V3|C3H15_ORYSJ (e_value=1e-83) Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica GN=Os02g0301000 PE=2 SV=1;; (*TAIR) AT1G01350.1 (e_value=2e-84) | Symbols: | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr1:136732-137970 FORWARD LENGTH=343;; (*ITAG) Solyc02g082110.2.1 (e_value=5e-93) genomic_reference:SL2.40ch02 gene_region:40406122-40408880 transcript_region:SL2.40ch02:40406122..40408880- go_terms:GO:0008270 functional_description:"Pre-mRNA-splicing factor cwc24 (AHRD V1 **-- B2WLF6_PYRTR); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00034787g0104.1 protein AED:0.10 eAED:0.10 QI:134|1|1|1|1|1|8|179|378 NbS00056033g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|191; (*GB) gi|225442009|ref|XP_002271802.1| (e_value=4e-36) PREDICTED: GDSL esterase/lipase 1 [Vitis vinifera];; (*SWP) sp|Q9LJP1|GRIP4_ARATH (e_value=4e-30) GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2;; (*TAIR) AT3G14225.1 (e_value=3e-31) | Symbols: GLIP4 | GDSL-motif lipase 4 | chr3:4734616-4735993 REVERSE LENGTH=377;; (*ITAG) Solyc11g051060.1.1 (e_value=4e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:42315429-42317499 transcript_region:SL2.40ch11:42315429..42317499- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase 2 (AHRD V1 ***- GLIP2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00062024g0005.1 protein AED:0.21 eAED:0.21 QI:1020|1|1|1|1|1|3|699|85; (*GB) gi|224055743|ref|XP_002298631.1| (e_value=9e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27050.1 (e_value=2e-24) | Symbols: | unknown protein; Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:9978286-9979636 REVERSE LENGTH=182; NbS00014469g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.61|0.42|1|0.46|0.71|14|0|746; (*GB) gi|240256047|ref|NP_194068.5| (e_value=5e-79) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G23370.1 (e_value=1e-81) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 2365 Blast hits to 710 proteins in 27 species: Archae - 0; Bacteria - 35; Metazoa - 0; Fungi - 30; Plants - 2300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12206362-12213435 REVERSE LENGTH=1038;; (*ITAG) Solyc07g056610.1.1 (e_value=8e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61751796-61754744 transcript_region:SL2.40ch07:61751796..61754744+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00014469g0007.1 protein AED:0.14 eAED:0.15 QI:0|0.62|0.44|0.77|1|1|9|0|416; (*GB) gi|255537385|ref|XP_002509759.1| (e_value=4e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G15050.1 (e_value=1e-54) | Symbols: | Protein of Unknown Function (DUF239) | chr4:8588548-8590345 REVERSE LENGTH=396;; (*ITAG) Solyc08g080820.1.1 (e_value=4e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61174975-61177379 transcript_region:SL2.40ch08:61174975..61177379- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase-like (AHRD V1 ***- Q6ZAJ4_ORYSJ); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00039963g0004.1 protein AED:0.38 eAED:0.84 QI:0|0|0|1|0|0|3|0|69 NbS00032380g0006.1 protein AED:0.22 eAED:0.31 QI:30|0.66|0.42|1|0.83|0.71|7|0|329; (*GB) gi|255559348|ref|XP_002520694.1| (e_value=5e-135) shikimate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=8e-74) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=6e-75) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc06g084460.2.1 (e_value=1e-173) genomic_reference:SL2.40ch06 gene_region:45845253-45849103 transcript_region:SL2.40ch06:45845253..45849103- go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR011342 Quinate/shikimate 5-dehydrogenase "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00032380g0007.1 protein AED:0.61 eAED:0.61 QI:0|0.33|0|0.5|0.66|0.75|4|0|99; (*GB) gi|255559348|ref|XP_002520694.1| (e_value=5e-21) shikimate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=1e-15) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=1e-16) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc06g084460.2.1 (e_value=3e-27) genomic_reference:SL2.40ch06 gene_region:45845253-45849103 transcript_region:SL2.40ch06:45845253..45849103- go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR011342 Quinate/shikimate 5-dehydrogenase "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00032380g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|273; (*GB) gi|224131260|ref|XP_002321040.1| (e_value=5e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|P50160|TS2_MAIZE (e_value=1e-67) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT4G03140.1 (e_value=1e-129) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:1392191-1393662 FORWARD LENGTH=343;; (*ITAG) Solyc09g074410.2.1 (e_value=2e-154) genomic_reference:SL2.40ch09 gene_region:61708159-61710983 transcript_region:SL2.40ch09:61708159..61710983+ go_terms:GO:0043621,GO:0005507 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7LR91_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621,GO:0005507 NbS00051186g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|225456252|ref|XP_002279421.1| (e_value=2e-93) PREDICTED: uncharacterized protein LOC100244084 [Vitis vinifera];; (*TAIR) AT5G50360.1 (e_value=3e-60) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20505433-20506308 REVERSE LENGTH=291;; (*ITAG) Solyc03g111100.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55819962-55820894 transcript_region:SL2.40ch03:55819962..55820894- functional_description:"AtIII18x5-like protein (Fragment) (AHRD V1 *-*- D9YU68_ARAHA)"; NbS00040945g0003.1 protein AED:0.10 eAED:0.10 QI:277|1|0.87|1|1|1|8|307|589; (*GB) gi|359479362|ref|XP_002277357.2| (e_value=0.0) PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P08926|RUBA_PEA (e_value=0.0) RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2;; (*TAIR) AT2G28000.1 (e_value=0.0) | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha | chr2:11926603-11929184 FORWARD LENGTH=586;; (*ITAG) Solyc11g069790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51502451-51507359 transcript_region:SL2.40ch11:51502451..51507359- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00004604g0007.1 protein AED:0.18 eAED:0.18 QI:178|0.8|0.66|1|0.8|0.66|6|0|294; (*GB) gi|225457765|ref|XP_002264003.1| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera];; (*TAIR) AT1G77122.1 (e_value=3e-69) | Symbols: | Uncharacterised protein family UPF0090 | chr1:28977427-28978674 REVERSE LENGTH=323;; (*ITAG) Solyc05g012120.2.1 (e_value=5e-38) genomic_reference:SL2.40ch05 gene_region:5328775-5332292 transcript_region:SL2.40ch05:5328775..5332292- functional_description:"Ribosome maturation factor rimP (AHRD V1 *-*- RIMP_LEPIN); contains Interpro domain(s) IPR003728 Uncharacterised protein family UPF0090 "; NbS00004604g0002.1 protein AED:0.10 eAED:0.10 QI:494|0|0.5|1|0|0.5|2|0|635; (*GB) gi|224092494|ref|XP_002309633.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LF20|CAP2_ARATH (e_value=0.0) Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2;; (*TAIR) AT2G25430.1 (e_value=0.0) | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr2:10822716-10824677 FORWARD LENGTH=653;; (*ITAG) Solyc06g011450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:7405375-7407219 transcript_region:SL2.40ch06:7405375..7407219+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00029628g0003.1 protein AED:0.00 eAED:0.00 QI:72|1|0.5|1|0|0.5|2|0|551; (*GB) gi|147882993|gb|ABQ51813.1| (e_value=0.0) RAN GTPase-activating protein 2 [Nicotiana benthamiana];; (*SWP) sp|Q9M651|RAGP2_ARATH (e_value=0.0) RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2;; (*TAIR) AT5G19320.1 (e_value=0.0) | Symbols: RANGAP2 | RAN GTPase activating protein 2 | chr5:6505310-6506947 REVERSE LENGTH=545;; (*ITAG) Solyc01g079680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71306007-71308978 transcript_region:SL2.40ch01:71306007..71308978+ go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase activating protein (Fragment) (AHRD V1 **-* A7M8K5_NICBE); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; GO:0005515,GO:0005098 NbS00029628g0007.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|147790057|emb|CAN75979.1| (e_value=4e-82) hypothetical protein VITISV_012183 [Vitis vinifera];; (*TAIR) AT3G05980.1 (e_value=5e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:1795514-1796251 FORWARD LENGTH=245;; (*ITAG) Solyc09g075740.1.1 (e_value=2e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62852280-62852996 transcript_region:SL2.40ch09:62852280..62852996- functional_description:"Unknown Protein (AHRD V1)"; NbS00029628g0024.1 protein AED:0.02 eAED:0.02 QI:59|1|0.5|1|1|0.5|2|0|149; (*GB) gi|297737012|emb|CBI26213.3| (e_value=7e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19310.1 (e_value=9e-18) | Symbols: | Homeotic gene regulator | chr5:6498906-6503432 FORWARD LENGTH=1064;; (*ITAG) Solyc01g079700.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:71323745-71325167 transcript_region:SL2.40ch01:71323745..71325167- functional_description:"Chromatin remodeling complex subunit (AHRD V1 ***- B9HJV0_POPTR)"; NbS00029628g0023.1 protein AED:0.04 eAED:0.04 QI:0|0.88|0.8|1|0.88|0.8|10|367|946; (*GB) gi|297737012|emb|CBI26213.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P22082|SNF2_YEAST (e_value=0.0) Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1;; (*TAIR) AT3G06010.1 (e_value=0.0) | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102;; (*ITAG) Solyc01g079690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71309355-71316439 transcript_region:SL2.40ch01:71309355..71316439- go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase Snf22 (AHRD V1 *--* B6K540_SCHJY); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00029628g0017.1 protein AED:0.22 eAED:0.22 QI:150|0.87|1|1|0.87|0.77|9|368|491; (*GB) gi|225432596|ref|XP_002281432.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Vitis vinifera];; (*SWP) sp|Q9ZQQ7|Y2144_ARATH (e_value=5e-54) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1;; (*TAIR) AT3G05990.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:1797116-1799732 REVERSE LENGTH=517;; (*ITAG) Solyc09g075730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62847311-62851664 transcript_region:SL2.40ch09:62847311..62851664+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00029628g0020.1 protein AED:0.25 eAED:0.25 QI:85|0.9|0.63|1|0.7|0.81|11|701|371; (*GB) gi|224099761|ref|XP_002311607.1| (e_value=2e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UHX9|CI114_MOUSE (e_value=9e-89) Uncharacterized protein C9orf114 homolog OS=Mus musculus GN=D2Wsu81e PE=2 SV=1;; (*TAIR) AT5G19300.1 (e_value=2e-151) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH=398;; (*ITAG) Solyc01g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71327058-71334838 transcript_region:SL2.40ch01:71327058..71334838- functional_description:"Uncharacterized conserved protein (AHRD V1 **-- Q2U4H5_ASPOR); contains Interpro domain(s) IPR003750 Protein of unknown function DUF171 "; NbS00029628g0026.1 protein AED:0.25 eAED:0.25 QI:317|1|1|1|0.84|0.78|14|191|608; (*GB) gi|148923087|gb|ABR18801.1| (e_value=0.0) kinase-associated protein phosphatase 1 [Solanum peruvianum];; (*SWP) sp|P46014|P2C70_ARATH (e_value=0.0) Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2;; (*TAIR) AT5G19280.1 (e_value=0.0) | Symbols: KAPP, RAG1 | kinase associated protein phosphatase | chr5:6488450-6493182 FORWARD LENGTH=581;; (*ITAG) Solyc01g079720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71336146-71351250 transcript_region:SL2.40ch01:71336146..71351250- go_terms:GO:0004721,GO:0019901 functional_description:"Kinase-associated protein phosphatase 1 (AHRD V1 **** A6N8J3_SOLPE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004721,GO:0019901 NbS00029771g0004.1 protein AED:0.13 eAED:0.14 QI:10|0.25|0|1|0.25|0.2|5|0|415; (*GB) gi|3378661|emb|CAA73483.1| (e_value=2e-116) putative outward rectifying potassium channel StKCO1a [Solanum tuberosum];; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=2e-95) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=2e-96) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc07g065450.2.1 (e_value=5e-115) genomic_reference:SL2.40ch07 gene_region:64424168-64425782 transcript_region:SL2.40ch07:64424168..64425782+ go_terms:GO:0015271,GO:0015269 functional_description:"Calcium-activated outward-rectifying potassium channel 1 (AHRD V1 **** B6TSL7_MAIZE); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00045125g0004.1 protein AED:0.10 eAED:0.10 QI:294|0.9|0.81|1|0.9|0.90|11|458|976; (*GB) gi|972511|emb|CAA62469.1| (e_value=0.0) phosphoenolpyruvate carboxylase [Solanum tuberosum];; (*SWP) sp|P29196|CAPP_SOLTU (e_value=0.0) Phosphoenolpyruvate carboxylase OS=Solanum tuberosum GN=PPC1 PE=2 SV=2;; (*TAIR) AT3G14940.1 (e_value=0.0) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968;; (*ITAG) Solyc12g014250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5069479-5074778 transcript_region:SL2.40ch12:5069479..5074778- go_terms:GO:0006099,GO:0003824 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- Q9SCB3_SOLLC); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0006099,GO:0003824 NbS00049594g0003.1 protein AED:0.45 eAED:0.61 QI:0|0|0|0.5|0.66|0.5|4|0|205 NbS00006327g0012.1 protein AED:0.19 eAED:0.19 QI:0|1|0.90|1|1|0.90|11|284|495; (*GB) gi|356572846|ref|XP_003554576.1| (e_value=0.0) PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max];; (*SWP) sp|O60155|YHY6_SCHPO (e_value=0.0) Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=2 SV=1;; (*TAIR) AT3G62120.2 (e_value=0.0) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001227-23003849 REVERSE LENGTH=530;; (*ITAG) Solyc06g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00006327g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|255579242|ref|XP_002530467.1| (e_value=1e-76) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G15760.1 (e_value=1e-58) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=202;; (*ITAG) Solyc03g117340.1.1 (e_value=7e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60543515-60544060 transcript_region:SL2.40ch03:60543515..60544060- functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR)"; NbS00048911g0003.1 protein AED:0.23 eAED:0.23 QI:377|1|1|1|0.87|0.88|9|407|363; (*GB) gi|225459415|ref|XP_002285820.1| (e_value=0.0) PREDICTED: transcription factor TGA4 [Vitis vinifera];; (*SWP) sp|Q39237|TGA1_ARATH (e_value=9e-153) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT5G65210.5 (e_value=7e-154) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc12g056860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48278099-48280333 transcript_region:SL2.40ch12:48278099..48280333- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00059005g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.66|3|0|210; (*GB) gi|351724199|ref|NP_001238329.1| (e_value=1e-66) seed maturation protein PM36 [Glycine max];; (*SWP) sp|Q9SWB6|PM36_SOYBN (e_value=3e-68) Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1;; (*TAIR) AT3G16990.1 (e_value=7e-63) | Symbols: | Haem oxygenase-like, multi-helical | chr3:5795937-5796783 REVERSE LENGTH=221;; (*ITAG) Solyc11g007560.1.1 (e_value=4e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1805305-1806807 transcript_region:SL2.40ch11:1805305..1806807+ functional_description:"Seed maturation protein PM36 (AHRD V1 ***- B6TPF2_MAIZE); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00034418g0001.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|153; (*GB) gi|224123274|ref|XP_002319038.1| (e_value=3e-22) histone 2 [Populus trichocarpa];; (*SWP) sp|O81826|H2A3_ARATH (e_value=1e-22) Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1;; (*TAIR) AT4G27230.2 (e_value=8e-24) | Symbols: HTA2 | histone H2A 2 | chr4:13637515-13638325 REVERSE LENGTH=131;; (*ITAG) Solyc12g005270.1.1 (e_value=6e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00013403g0003.1 protein AED:0.29 eAED:0.29 QI:56|1|1|1|1|1|5|379|208; (*GB) gi|81076822|gb|ABB55398.1| (e_value=1e-66) 40S ribosomal protein S10-like [Solanum tuberosum];; (*SWP) sp|Q9LTF2|RS103_ARATH (e_value=4e-59) 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2;; (*TAIR) AT5G52650.1 (e_value=3e-60) | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr5:21355781-21357003 REVERSE LENGTH=179;; (*ITAG) Solyc01g099670.2.1 (e_value=3e-69) genomic_reference:SL2.40ch01 gene_region:81603519-81605647 transcript_region:SL2.40ch01:81603519..81605647- functional_description:"40S ribosomal protein S10-like (AHRD V1 ***- Q2XTB2_SOLTU); contains Interpro domain(s) IPR005326 Plectin/S10, N-terminal "; NbS00055862g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|224125176|ref|XP_002329912.1| (e_value=1e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|P14009|14KD_DAUCA (e_value=3e-34) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G12100.1 (e_value=2e-36) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:4095246-4095845 FORWARD LENGTH=132;; (*ITAG) Solyc08g078940.1.1 (e_value=3e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59757521-59757934 transcript_region:SL2.40ch08:59757521..59757934+ go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00055862g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|350539960|ref|NP_001233824.1| (e_value=8e-27) arachidonic acid-induced DEA1 precursor [Solanum lycopersicum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=4e-14) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12510.1 (e_value=6e-17) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129;; (*ITAG) Solyc08g078900.1.1 (e_value=2e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:59741865-59742281 transcript_region:SL2.40ch08:59741865..59742281- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00007530g0003.1 protein AED:0.05 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|224099899|ref|XP_002311666.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q38895|SUP_ARATH (e_value=3e-17) Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1;; (*TAIR) AT3G23130.1 (e_value=2e-18) | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fingers superfamily protein | chr3:8242504-8243118 FORWARD LENGTH=204;; (*ITAG) Solyc06g053720.1.1 (e_value=1e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:33071185-33071718 transcript_region:SL2.40ch06:33071185..33071718- go_terms:GO:0003700 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 **** D0UTY6_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00007530g0001.1 protein AED:0.01 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc09g066200.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60236244-60236555 transcript_region:SL2.40ch09:60236244..60236555- functional_description:"Unknown Protein (AHRD V1)"; NbS00007530g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|1|0.5|0.33|3|203|445; (*GB) gi|225437824|ref|XP_002263239.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein OR23-like [Vitis vinifera];; (*SWP) sp|Q0V7S6|FK125_ARATH (e_value=6e-160) F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1;; (*TAIR) AT4G03030.1 (e_value=4e-161) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:1335942-1337270 REVERSE LENGTH=442;; (*ITAG) Solyc09g066210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60238525-60243325 transcript_region:SL2.40ch09:60238525..60243325- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7M3A7_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009120g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.85|0.75|1|1|1|8|0|434; (*GB) gi|40809674|emb|CAB42650.2| (e_value=0.0) putative preprolegumain [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=0.0) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:51300723-51303058 transcript_region:SL2.40ch08:51300723..51303058- go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00050361g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.66|0.83|1|1|6|152|360; (*GB) gi|356576489|ref|XP_003556363.1| (e_value=1e-163) PREDICTED: uncharacterized protein LOC100796923 [Glycine max];; (*TAIR) AT1G04280.1 (e_value=2e-152) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1143643-1146541 REVERSE LENGTH=534;; (*ITAG) Solyc06g053810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33165093-33169631 transcript_region:SL2.40ch06:33165093..33169631+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00042417g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|454|237; (*GB) gi|356538720|ref|XP_003537849.1| (e_value=6e-47) PREDICTED: uncharacterized protein LOC100779359 [Glycine max];; (*TAIR) AT2G21350.1 (e_value=1e-41) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:9136451-9137267 REVERSE LENGTH=222;; (*ITAG) Solyc01g110270.2.1 (e_value=1e-97) genomic_reference:SL2.40ch01 gene_region:88752539-88755637 transcript_region:SL2.40ch01:88752539..88755637+ go_terms:GO:0003723 functional_description:"Crs1/yhby domain containing protein (Fragment) (AHRD V1 *-*- A6N061_ORYSI); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00046534g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|146; (*GB) gi|350535769|ref|NP_001234468.1| (e_value=3e-75) ethylene-responsive transcriptional coactivator [Solanum lycopersicum];; (*SWP) sp|Q9LV58|MBF1C_ARATH (e_value=9e-64) Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1;; (*TAIR) AT3G24500.1 (e_value=7e-65) | Symbols: MBF1C, ATMBF1C | multiprotein bridging factor 1C | chr3:8918755-8919201 FORWARD LENGTH=148;; (*ITAG) Solyc01g104740.2.1 (e_value=3e-77) genomic_reference:SL2.40ch01 gene_region:84886353-84887250 transcript_region:SL2.40ch01:84886353..84887250+ go_terms:GO:0003713 functional_description:"Multiprotein bridging factor 1 (AHRD V1 ***- C8C4P8_WHEAT); contains Interpro domain(s) IPR013729 Multiprotein bridging factor 1, N-terminal "; GO:0003713 NbS00049539g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.57|1|1|1|7|0|832; (*GB) gi|224122858|ref|XP_002330381.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81905|SD18_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=0.0) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc07g063820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63374423-63378124 transcript_region:SL2.40ch07:63374423..63378124- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00033156g0002.1 protein AED:0.14 eAED:0.14 QI:1294|0.6|0.33|1|1|1|6|0|456; (*GB) gi|359431011|gb|AEV46316.1| (e_value=0.0) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|Q39693|INV3_DAUCA (e_value=3e-146) Beta-fructofuranosidase, insoluble isoenzyme 3 OS=Daucus carota GN=INV3 PE=3 SV=1;; (*TAIR) AT3G52600.1 (e_value=1e-136) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19509273 REVERSE LENGTH=590;; (*ITAG) Solyc09g010090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00060231g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.87|0.88|1|0.93|0.94|17|195|563; (*GB) gi|359477758|ref|XP_002281923.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242555 [Vitis vinifera];; (*SWP) sp|P31049|FAMT_PSEPU (e_value=2e-36) Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1;; (*TAIR) AT3G23510.1 (e_value=0.0) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc03g045140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15588568-15596050 transcript_region:SL2.40ch03:15588568..15596050- go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00048632g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|22530884|gb|AAM96946.1| (e_value=5e-72) small heat shock protein [Solanum lycopersicum];; (*SWP) sp|P09886|HS21C_PEA (e_value=3e-38) Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1;; (*TAIR) AT4G27670.1 (e_value=4e-38) | Symbols: HSP21 | heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227;; (*ITAG) Solyc05g014280.2.1 (e_value=2e-74) genomic_reference:SL2.40ch05 gene_region:8089580-8092146 transcript_region:SL2.40ch05:8089580..8092146- functional_description:"Heat shock protein (AHRD V1 ***- A9QVH3_9FABA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00002274g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|206114257|gb|ACI05256.1| (e_value=4e-117) type I MADS box transcription factor [Petunia x hybrida];; (*SWP) sp|Q9FJK3|AGL80_ARATH (e_value=4e-50) Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1;; (*TAIR) AT5G48670.1 (e_value=3e-51) | Symbols: FEM111, AGL80 | AGAMOUS-like 80 | chr5:19738825-19739790 REVERSE LENGTH=321;; (*ITAG) Solyc01g102260.2.1 (e_value=7e-113) genomic_reference:SL2.40ch01 gene_region:82852031-82852877 transcript_region:SL2.40ch01:82852031..82852877- go_terms:GO:0005515,GO:0003677 functional_description:"Pheres1 (Fragment) (AHRD V1 ***- B2BFM9_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003677 NbS00002274g0010.1 protein AED:0.14 eAED:0.14 QI:199|0.5|0.66|1|0|0|3|224|70; (*ITAG) Solyc01g102290.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:82863311-82864206 transcript_region:SL2.40ch01:82863311..82864206- go_terms:GO:0016021 functional_description:"Stress-induced hydrophobic peptide (AHRD V1 **-- B9N409_POPTR); contains Interpro domain(s) IPR000612 Uncharacterised protein family UPF0057 "; GO:0016021 NbS00002274g0007.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.33|1|1|3|0|65 NbS00002274g0009.1 protein AED:0.52 eAED:0.52 QI:14|0|0|1|1|1|2|0|82; (*GB) gi|255543044|ref|XP_002512585.1| (e_value=1e-22) ring finger, putative [Ricinus communis];; (*SWP) sp|Q9M9L0|APC11_ARATH (e_value=2e-23) Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2;; (*TAIR) AT3G05870.2 (e_value=6e-24) | Symbols: APC11 | anaphase-promoting complex/cyclosome 11 | chr3:1753961-1754802 FORWARD LENGTH=87;; (*ITAG) Solyc01g102270.2.1 (e_value=6e-24) genomic_reference:SL2.40ch01 gene_region:82855041-82858807 transcript_region:SL2.40ch01:82855041..82858807+ functional_description:"Anaphase promoting complex subunit 11 (AHRD V1 ***- D7MN37_ARALY)"; NbS00004965g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|118 NbS00019730g0003.1 protein AED:0.25 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|171; (*GB) gi|225423434|ref|XP_002264324.1| (e_value=6e-37) PREDICTED: probable 6-phosphogluconolactonase 1 isoform 1 [Vitis vinifera];; (*SWP) sp|A2XI04|6PGL1_ORYSI (e_value=7e-24) Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. indica GN=OsI_011697 PE=3 SV=2;; (*TAIR) AT1G13700.1 (e_value=4e-24) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc01g010250.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:5033711-5037078 transcript_region:SL2.40ch01:5033711..5037078- go_terms:GO:0006098,GO:0005975 functional_description:"6-phosphogluconolactonase (AHRD V1 ***- B6U0H2_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0006098,GO:0005975 NbS00022982g0007.1 protein AED:0.00 eAED:0.00 QI:72|1|0.5|1|0|0.5|2|0|232; (*GB) gi|388507998|gb|AFK42065.1| (e_value=3e-67) unknown [Medicago truncatula];; (*TAIR) AT1G31817.1 (e_value=4e-50) | Symbols: NFD3 | Ribosomal L18p/L5e family protein | chr1:11414932-11416356 REVERSE LENGTH=314;; (*ITAG) Solyc08g075720.1.1 (e_value=6e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57012295-57012765 transcript_region:SL2.40ch08:57012295..57012765- go_terms:GO:0048027 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- A3UD87_9RHOB); contains Interpro domain(s) IPR001971 Ribosomal protein S11 "; GO:0048027 NbS00022982g0008.1 protein AED:0.16 eAED:0.38 QI:47|0|0.5|1|1|1|2|0|46 NbS00046929g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0.5|2|0|407; (*GB) gi|225445535|ref|XP_002282211.1| (e_value=0.0) PREDICTED: equilibrative nucleoside transporter 4-like [Vitis vinifera];; (*SWP) sp|A1L272|S29A4_DANRE (e_value=5e-26) Equilibrative nucleoside transporter 4 OS=Danio rerio GN=slc29a4 PE=2 SV=1;; (*TAIR) AT1G02630.1 (e_value=1e-174) | Symbols: | Nucleoside transporter family protein | chr1:561007-562382 REVERSE LENGTH=389;; (*ITAG) Solyc07g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2944383-2946680 transcript_region:SL2.40ch07:2944383..2946680+ go_terms:GO:0010174 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9HAJ2_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0010174 NbS00034422g0004.1 protein AED:0.30 eAED:0.51 QI:0|0.2|0.16|0.66|0.6|0.5|6|0|209; (*GB) gi|224102601|ref|XP_002312743.1| (e_value=2e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q67XQ0|Y4424_ARATH (e_value=2e-92) DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1;; (*TAIR) AT4G14240.1 (e_value=2e-93) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr4:8204712-8207273 REVERSE LENGTH=494;; (*ITAG) Solyc01g080160.2.1 (e_value=2e-104) genomic_reference:SL2.40ch01 gene_region:71859758-71868013 transcript_region:SL2.40ch01:71859758..71868013+ functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00007997g0013.1 protein AED:0.11 eAED:0.17 QI:0|1|0.6|1|1|1|5|0|405; (*GB) gi|21535795|emb|CAC85728.1| (e_value=0.0) aspartate carbamoyltransferase [Solanum tuberosum];; (*SWP) sp|Q43086|PYRB1_PEA (e_value=0.0) Aspartate carbamoyltransferase 1, chloroplastic OS=Pisum sativum GN=PYRB1 PE=2 SV=1;; (*TAIR) AT3G20330.1 (e_value=0.0) | Symbols: PYRB | PYRIMIDINE B | chr3:7090354-7091904 REVERSE LENGTH=390;; (*ITAG) Solyc11g006350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1068921-1070054 transcript_region:SL2.40ch11:1068921..1070054- go_terms:GO:0006207,GO:0006520 functional_description:"Aspartate carbamoyltransferase (AHRD V1 ***- Q8L6B8_SOLTU); contains Interpro domain(s) IPR002082 Aspartate carbamoyltransferase, eukaryotic "; GO:0006207,GO:0006520 NbS00007997g0014.1 protein AED:0.09 eAED:0.22 QI:6|0|0|1|0|0.25|4|0|304; (*ITAG) Solyc00g255510.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20235387-20236924 transcript_region:SL2.40ch00:20235387..20236924- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00007997g0003.1 protein AED:0.15 eAED:0.24 QI:0|0|0|1|1|1|7|0|393; (*GB) gi|317106767|dbj|BAJ53259.1| (e_value=0.0) JMS10C05.2 [Jatropha curcas];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=5e-159) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=3e-160) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc03g058970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase "; NbS00007997g0012.1 protein AED:0.83 eAED:0.83 QI:32|0|0|0.5|1|1|2|0|100; (*GB) gi|29838631|gb|AAM75140.1| (e_value=8e-53) alkaline alpha galactosidase II [Cucumis melo];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=8e-45) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.3 (e_value=8e-47) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21289725-21292694 REVERSE LENGTH=565;; (*ITAG) Solyc07g007930.2.1 (e_value=9e-31) genomic_reference:SL2.40ch07 gene_region:2591006-2595679 transcript_region:SL2.40ch07:2591006..2595679+ go_terms:GO:0006508 functional_description:"Alkaline alpha galactosidase 2 (AHRD V1 **-- Q575Z7_MAIZE); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0006508 NbS00002906g0001.1 protein AED:0.28 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|356533877|ref|XP_003535484.1| (e_value=3e-54) PREDICTED: peroxidase 65-like [Glycine max];; (*SWP) sp|O23609|PER41_ARATH (e_value=2e-52) Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1;; (*TAIR) AT4G17690.1 (e_value=2e-53) | Symbols: | Peroxidase superfamily protein | chr4:9846127-9847107 FORWARD LENGTH=326;; (*ITAG) Solyc08g007150.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1708656-1709615 transcript_region:SL2.40ch08:1708656..1709615- go_terms:GO:0004601 functional_description:"Peroxidase 65 (AHRD V1 **** C7E9R8_BRACM); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00002906g0009.1 protein AED:0.02 eAED:0.02 QI:41|1|0.33|1|1|1|3|391|64; (*GB) gi|225427377|ref|XP_002282974.1| (e_value=3e-40) PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera];; (*SWP) sp|Q9XHE4|RL37A_GOSHI (e_value=1e-40) 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=4e-41) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=5e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00002906g0008.1 protein AED:0.11 eAED:0.11 QI:299|0.5|0.4|0.8|0.5|0.6|5|0|538; (*GB) gi|224138788|ref|XP_002326690.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23553|BAM3_ARATH (e_value=0.0) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=0.0) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1700691-1704229 transcript_region:SL2.40ch08:1700691..1704229+ go_terms:GO:0016161 functional_description:"Beta-amylase 8 (AHRD V1 **** D7MC27_ARALY); contains Interpro domain(s) IPR001554 Glycoside hydrolase, family 14 "; GO:0016161 NbS00002309g0003.1 protein AED:0.31 eAED:0.31 QI:347|0.75|0.6|1|0.75|0.8|5|0|123; (*GB) gi|33329188|gb|AAQ09994.1| (e_value=1e-54) S2 self-incompatibility locus-linked pollen 3.2 protein [Petunia integrifolia subsp. inflata];; (*ITAG) Solyc01g008680.2.1 (e_value=5e-56) genomic_reference:SL2.40ch01 gene_region:2734251-2739609 transcript_region:SL2.40ch01:2734251..2739609- functional_description:"S2 self-incompatibility locus-linked pollen 3.2 protein (AHRD V1 ***- Q7XAE8_PETIN)"; NbS00016367g0015.1 protein AED:0.04 eAED:0.04 QI:44|1|1|1|1|1|3|254|143; (*GB) gi|388496012|gb|AFK36072.1| (e_value=2e-92) unknown [Lotus japonicus];; (*SWP) sp|Q9ZNT3|ADF5_ARATH (e_value=7e-86) Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1;; (*TAIR) AT2G16700.1 (e_value=6e-87) | Symbols: ADF5, ATADF5 | actin depolymerizing factor 5 | chr2:7244717-7245467 FORWARD LENGTH=143;; (*ITAG) Solyc01g111380.2.1 (e_value=5e-100) genomic_reference:SL2.40ch01 gene_region:89410321-89411406 transcript_region:SL2.40ch01:89410321..89411406+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 5 (AHRD V1 **** A1XJ48_GOSHI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00016367g0001.1 protein AED:0.13 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|613; (*GB) gi|359474852|ref|XP_003631542.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=0.0) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00016367g0014.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0|1|1|1|4|0|510; (*GB) gi|224105185|ref|XP_002313719.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G38640.1 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr4:18059884-18062091 REVERSE LENGTH=556;; (*ITAG) Solyc01g111370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89403105-89407443 transcript_region:SL2.40ch01:89403105..89407443+ functional_description:"Choline transporter like family (AHRD V1 *-*- C1FD31_9CHLO); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00016367g0013.1 protein AED:0.32 eAED:0.32 QI:233|1|0.71|1|1|1|7|313|228; (*GB) gi|388494638|gb|AFK35385.1| (e_value=7e-112) unknown [Medicago truncatula];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=4e-76) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT4G34960.1 (e_value=5e-106) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:16648865-16650646 FORWARD LENGTH=224;; (*ITAG) Solyc01g111360.2.1 (e_value=8e-146) genomic_reference:SL2.40ch01 gene_region:89397602-89402091 transcript_region:SL2.40ch01:89397602..89402091+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** D7MDH2_ARALY); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00016367g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255586424|ref|XP_002533857.1| (e_value=5e-85) Cucumisin precursor, putative [Ricinus communis];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-36) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=9e-78) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=3e-116) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00057333g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|83755093|gb|ABC46407.1| (e_value=2e-21) knotted 1-binding protein 36 [Nicotiana tabacum]; NbS00057333g0014.1 protein AED:0.45 eAED:0.51 QI:0|0.6|0.5|0.83|0.8|0.83|6|0|214; (*GB) gi|255566462|ref|XP_002524216.1| (e_value=1e-91) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q6PIY7|GLD2_HUMAN (e_value=1e-17) Poly(A) RNA polymerase GLD2 OS=Homo sapiens GN=PAPD4 PE=1 SV=1;; (*TAIR) AT2G39740.1 (e_value=2e-79) | Symbols: | Nucleotidyltransferase family protein | chr2:16576250-16578704 FORWARD LENGTH=511;; (*ITAG) Solyc06g051780.2.1 (e_value=1e-115) genomic_reference:SL2.40ch06 gene_region:31930214-31946130 transcript_region:SL2.40ch06:31930214..31946130+ go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase (AHRD V1 **-- B6K2B5_SCHJY); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0016779 NbS00057333g0015.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|0|0|2|0|95; (*GB) gi|83755093|gb|ABC46407.1| (e_value=7e-32) knotted 1-binding protein 36 [Nicotiana tabacum];; (*ITAG) Solyc03g118440.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61375887-61376641 transcript_region:SL2.40ch03:61375887..61376641+ functional_description:"Knotted 1-binding protein 36 (AHRD V1 ***- A0S861_TOBAC)"; NbS00002512g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.33|1|1|0.66|3|0|135; (*GB) gi|359494289|ref|XP_003634753.1| (e_value=2e-54) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=1e-48) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.4 (e_value=7e-50) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4197606-4201250 REVERSE LENGTH=1120;; (*ITAG) Solyc07g065320.2.1 (e_value=1e-78) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00016458g0004.1 protein AED:0.10 eAED:0.10 QI:30|0.66|0.46|1|0.66|0.76|13|2046|733; (*GB) gi|359480634|ref|XP_002279255.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247452 [Vitis vinifera];; (*TAIR) AT4G34280.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc02g064800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30527138-30531699 transcript_region:SL2.40ch02:30527138..30531699+ go_terms:GO:0000166 functional_description:"Histone-binding protein RBBP7 (AHRD V1 *--* RBBP7_BOVIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00005894g0004.1 protein AED:0.09 eAED:0.09 QI:331|1|0.90|1|0.9|0.90|11|279|446; (*GB) gi|356505725|ref|XP_003521640.1| (e_value=0.0) PREDICTED: protein notum homolog [Glycine max];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=3e-17) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT3G05910.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr3:1764509-1767240 REVERSE LENGTH=415;; (*ITAG) Solyc01g102350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82941604-82946739 transcript_region:SL2.40ch01:82941604..82946739- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00056286g0006.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.33|1|1|3|0|169; (*GB) gi|57013971|ref|YP_173443.1| (e_value=3e-89) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00056286g0010.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|0.66|0.5|4|0|717; (*GB) gi|225423470|ref|XP_002274151.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g69290 [Vitis vinifera];; (*SWP) sp|P0C7R4|PP110_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1;; (*TAIR) AT1G69290.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26047372-26049348 REVERSE LENGTH=658;; (*ITAG) Solyc01g088750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75275866-75278282 transcript_region:SL2.40ch01:75275866..75278282- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWX2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00056286g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.66|1|0.4|0.33|6|558|254; (*GB) gi|21261784|emb|CAD32500.1| (e_value=1e-157) protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum];; (*SWP) sp|P40228|CSK2B_ARATH (e_value=1e-133) Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1;; (*TAIR) AT5G47080.1 (e_value=1e-134) | Symbols: CKB1 | casein kinase II beta chain 1 | chr5:19124969-19126397 REVERSE LENGTH=287;; (*ITAG) Solyc01g088740.2.1 (e_value=4e-146) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00025923g0005.1 protein AED:0.16 eAED:0.18 QI:54|0.8|0.5|1|0.4|0.5|6|320|720; (*GB) gi|359493721|ref|XP_002280717.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63340297-63343608 transcript_region:SL2.40ch07:63340297..63343608- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00040185g0011.1 protein AED:0.24 eAED:0.26 QI:0|0.72|0.75|0.91|0.45|0.5|12|1359|309; (*GB) gi|255550097|ref|XP_002516099.1| (e_value=1e-169) serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=4e-86) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.1 (e_value=8e-163) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=519;; (*ITAG) Solyc08g062670.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00040185g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|1|4|665|279; (*GB) gi|350538193|ref|NP_001234587.1| (e_value=3e-116) Ran binding protein-1 [Solanum lycopersicum];; (*SWP) sp|P92985|RBP1C_ARATH (e_value=2e-90) Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1;; (*TAIR) AT5G58590.1 (e_value=2e-91) | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680319-23681714 REVERSE LENGTH=219;; (*ITAG) Solyc08g062660.2.1 (e_value=6e-119) genomic_reference:SL2.40ch08 gene_region:48903019-48905978 transcript_region:SL2.40ch08:48903019..48905978+ go_terms:GO:0008536 functional_description:"Ran GTPase binding protein (AHRD V1 **** C4R913_PICPG); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0008536 NbS00024677g0022.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.69|1|0.91|0.92|13|0|977; (*GB) gi|255576609|ref|XP_002529195.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G72390.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325;; (*ITAG) Solyc06g063010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36164201-36174916 transcript_region:SL2.40ch06:36164201..36174916+ functional_description:"At1g72390-like protein (Fragment) (AHRD V1 *-*- C0JD42_9BRAS)"; NbS00024677g0023.1 protein AED:0.05 eAED:0.05 QI:187|1|1|1|1|0.88|9|192|543; (*GB) gi|225442050|ref|XP_002272277.1| (e_value=2e-95) PREDICTED: zinc finger CCCH domain-containing protein 62 [Vitis vinifera];; (*SWP) sp|Q338N2|C3H62_ORYSJ (e_value=4e-54) Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2;; (*TAIR) AT5G66840.1 (e_value=7e-50) | Symbols: | SAP domain-containing protein | chr5:26692922-26695296 REVERSE LENGTH=551;; (*ITAG) Solyc06g063020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36178410-36181754 transcript_region:SL2.40ch06:36178410..36181754- go_terms:GO:0003676,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 62 (AHRD V1 *--- C3H62_ORYSJ); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676,GO:0008270 NbS00024677g0025.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.6|0.5|0.4|5|0|456; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=4e-57) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT1G72410.2 (e_value=3e-24) | Symbols: | COP1-interacting protein-related | chr1:27251535-27256246 REVERSE LENGTH=1270;; (*ITAG) Solyc06g063050.2.1 (e_value=1e-111) genomic_reference:SL2.40ch06 gene_region:36194636-36198794 transcript_region:SL2.40ch06:36194636..36198794- functional_description:"COP1-interacting protein 7 (CIP7)-like (AHRD V1 **-- Q8GRM2_ORYSJ)"; NbS00024677g0021.1 protein AED:0.17 eAED:0.17 QI:231|1|1|1|0.93|0.87|16|460|540; (*GB) gi|37953301|gb|AAR05449.1| (e_value=0.0) alanine aminotransferase [Capsicum annuum];; (*SWP) sp|Q9LDV4|ALAT2_ARATH (e_value=0.0) Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1;; (*TAIR) AT1G72330.1 (e_value=0.0) | Symbols: ALAAT2 | alanine aminotransferase 2 | chr1:27233637-27236571 FORWARD LENGTH=540;; (*ITAG) Solyc06g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36234795-36239218 transcript_region:SL2.40ch06:36234795..36239218- go_terms:GO:0005524,GO:0004021 functional_description:"Alanine aminotransferase (AHRD V1 **** Q6VEJ5_CAPAN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0005524,GO:0004021 NbS00024677g0020.1 protein AED:0.37 eAED:0.39 QI:269|0.66|0.5|1|0.66|0.5|4|0|130; (*GB) gi|329025150|gb|AEB71558.1| (e_value=1e-57) synaptobrevin/VAMP-like protein [Solanum chacoense];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=1e-57) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=1e-58) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=3e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00027294g0004.1 protein AED:0.15 eAED:0.15 QI:256|0.71|0.75|1|1|1|8|342|509; (*GB) gi|359485329|ref|XP_003633259.1| (e_value=7e-180) PREDICTED: uncharacterized protein LOC100243829 [Vitis vinifera];; (*TAIR) AT5G60580.3 (e_value=2e-91) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc07g044780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55141081-55156142 transcript_region:SL2.40ch07:55141081..55156142+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00027294g0010.1 protein AED:0.26 eAED:0.28 QI:0|1|0.71|1|1|0.85|7|0|666; (*GB) gi|296086337|emb|CBI31778.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUW5|RH53_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1;; (*TAIR) AT3G22330.1 (e_value=0.0) | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616;; (*ITAG) Solyc07g044760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55130093-55135291 transcript_region:SL2.40ch07:55130093..55135291+ go_terms:GO:0003677 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003677 NbS00027294g0009.1 protein AED:0.32 eAED:0.33 QI:1055|0.87|0.88|1|0.62|0.66|9|0|232; (*GB) gi|225446891|ref|XP_002284045.1| (e_value=8e-127) PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera];; (*SWP) sp|Q6NVS2|ERGI3_XENTR (e_value=9e-31) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1;; (*TAIR) AT3G22290.1 (e_value=9e-121) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc07g044810.2.1 (e_value=7e-139) genomic_reference:SL2.40ch07 gene_region:55163956-55178160 transcript_region:SL2.40ch07:55163956..55178160- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00055004g0008.1 protein AED:0.23 eAED:0.23 QI:173|1|1|1|0.63|0.83|12|377|399; (*GB) gi|37983622|gb|AAR06292.1| (e_value=0.0) SAICAR synthetase [Nicotiana tabacum];; (*SWP) sp|P38025|PUR7_ARATH (e_value=0.0) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2;; (*TAIR) AT3G21110.2 (e_value=0.0) | Symbols: PUR7, PURC | purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411;; (*ITAG) Solyc01g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase "; GO:0004639 NbS00055004g0009.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|0.5|0.66|3|0|115; (*GB) gi|350538459|ref|NP_001234088.1| (e_value=2e-54) uncharacterized protein LOC543815 [Solanum lycopersicum];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=6e-14) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*ITAG) Solyc01g081310.2.1 (e_value=4e-57) genomic_reference:SL2.40ch01 gene_region:73052539-73054069 transcript_region:SL2.40ch01:73052539..73054069+ functional_description:"Glutathione-S-transferase (AHRD V1 ***- B2BY02_9BRAS); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00055004g0004.1 protein AED:0.11 eAED:0.17 QI:0|0|0|0.83|1|1|6|0|552; (*GB) gi|225459164|ref|XP_002283946.1| (e_value=2e-172) PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like [Vitis vinifera];; (*SWP) sp|Q3E911|PP400_ARATH (e_value=3e-137) Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1;; (*TAIR) AT5G27460.1 (e_value=2e-138) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9693262-9694815 REVERSE LENGTH=491;; (*ITAG) Solyc01g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73054879-73057079 transcript_region:SL2.40ch01:73054879..73057079- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M643_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028181g0006.1 protein AED:0.01 eAED:0.01 QI:94|1|1|1|1|1|2|223|336; (*GB) gi|111378451|gb|ABH09237.1| (e_value=8e-134) CONSTANS-like protein [Solanum tuberosum];; (*SWP) sp|Q940T9|COL4_ARATH (e_value=5e-94) Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2;; (*TAIR) AT5G24930.1 (e_value=2e-94) | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589325-8590949 FORWARD LENGTH=406;; (*ITAG) Solyc08g006530.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:1142836-1144790 transcript_region:SL2.40ch08:1142836..1144790+ go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like protein (AHRD V1 **-- Q0MQL9_SOLTU); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005515,GO:0003700 NbS00028181g0009.1 protein AED:0.04 eAED:0.04 QI:106|1|1|1|0.25|0.2|5|411|221; (*GB) gi|224053655|ref|XP_002297914.1| (e_value=3e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SCY2|FKB13_ARATH (e_value=4e-70) Peptidyl-prolyl cis-trans isomerase FKBP13, chloroplastic OS=Arabidopsis thaliana GN=FKBP13 PE=1 SV=2;; (*TAIR) AT5G45680.1 (e_value=3e-71) | Symbols: ATFKBP13, FKBP13 | FK506-binding protein 13 | chr5:18530894-18532128 FORWARD LENGTH=208;; (*ITAG) Solyc08g006540.2.1 (e_value=8e-94) genomic_reference:SL2.40ch08 gene_region:1149517-1154147 transcript_region:SL2.40ch08:1149517..1154147- go_terms:GO:0005528,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-** B1XHQ5_SYNP2); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528,GO:0003755 NbS00009589g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|116790051|gb|ABK25484.1| (e_value=7e-31) unknown [Picea sitchensis];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=3e-30) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=3e-31) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc05g032760.2.1 (e_value=6e-35) genomic_reference:SL2.40ch05 gene_region:44317368-44323410 transcript_region:SL2.40ch05:44317368..44323410- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00009589g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|0.5|2|0|1134; (*GB) gi|225444822|ref|XP_002279012.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249046 [Vitis vinifera];; (*TAIR) AT5G20610.1 (e_value=1e-169) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc05g032750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:44311051-44315155 transcript_region:SL2.40ch05:44311051..44315155+ go_terms:GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00009589g0103.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|609 NbS00057790g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|252; (*GB) gi|255584540|ref|XP_002532997.1| (e_value=6e-72) kinase, putative [Ricinus communis];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=1e-51) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=7e-53) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc10g084860.1.1 (e_value=8e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63570163-63572223 transcript_region:SL2.40ch10:63570163..63572223- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00030695g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|203; (*GB) gi|147798735|emb|CAN61076.1| (e_value=6e-12) hypothetical protein VITISV_012918 [Vitis vinifera];; (*ITAG) Solyc07g045450.1.1 (e_value=5e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:55873619-55874629 transcript_region:SL2.40ch07:55873619..55874629- functional_description:"Unknown Protein (AHRD V1)"; NbS00055111g0002.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|0|0|3|0|213; (*GB) gi|359497770|ref|XP_002272250.2| (e_value=7e-31) PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q9SV07|ASAT1_ARATH (e_value=3e-18) Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1;; (*TAIR) AT3G51970.1 (e_value=2e-19) | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345;; (*ITAG) Solyc11g012250.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5130216-5131268 transcript_region:SL2.40ch11:5130216..5131268+ functional_description:"Wax synthase isoform 3 (AHRD V1 **-- Q84XY7_VITVI)"; NbC24084343g0001.1 protein AED:0.26 eAED:0.26 QI:75|1|0.5|1|0|0|2|141|13 NbS00026163g0003.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|113205399|gb|AAU90302.2| (e_value=7e-14) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g066930.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00026163g0007.1 protein AED:0.25 eAED:0.25 QI:226|0|0.25|1|0.33|0.25|4|0|623; (*GB) gi|297744809|emb|CBI38077.3| (e_value=3e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-27) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-25) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc06g062440.2.1 (e_value=7e-110) genomic_reference:SL2.40ch06 gene_region:35780427-35784240 transcript_region:SL2.40ch06:35780427..35784240- go_terms:GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006915 NbS00004301g0004.1 protein AED:0.27 eAED:0.27 QI:92|1|1|1|1|1|5|343|159; (*GB) gi|124226|sp|P24922.1|IF5A2_NICPL (e_value=8e-112) RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2; AltName: Full=eIF-4D;; (*SWP) sp|P24922|IF5A2_NICPL (e_value=2e-113) Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1;; (*TAIR) AT1G13950.1 (e_value=6e-103) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc04g005510.2.1 (e_value=4e-113) genomic_reference:SL2.40ch04 gene_region:342519-345154 transcript_region:SL2.40ch04:342519..345154+ go_terms:GO:0003743,GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A "; GO:0003743,GO:0047485 NbS00024209g0016.1 protein AED:0.14 eAED:0.17 QI:0|0|0|0.75|0.33|0.5|4|0|295; (*GB) gi|255565972|ref|XP_002523974.1| (e_value=1e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G17670.1 (e_value=4e-102) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5821082-5822600 FORWARD LENGTH=309;; (*ITAG) Solyc01g081480.2.1 (e_value=1e-136) genomic_reference:SL2.40ch01 gene_region:73194021-73197709 transcript_region:SL2.40ch01:73194021..73197709+ go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MVA3 (AHRD V1 **-- Q9FN84_ARATH)"; GO:0031177 NbS00024209g0015.1 protein AED:0.71 eAED:0.93 QI:0|0|0|0.33|0.5|0.33|3|0|200 NbS00024503g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.57|0.5|0.87|0.71|0.87|8|270|311; (*GB) gi|225459748|ref|XP_002285898.1| (e_value=8e-112) PREDICTED: prolyl 4-hydroxylase subunit alpha-2 [Vitis vinifera];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=1e-21) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT1G20270.1 (e_value=3e-111) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:7021383-7022923 REVERSE LENGTH=287;; (*ITAG) Solyc04g081930.2.1 (e_value=6e-137) genomic_reference:SL2.40ch04 gene_region:63374898-63378319 transcript_region:SL2.40ch04:63374898..63378319- go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TYA6_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00000442g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.9|0.63|1|0.9|0.90|11|875|428; (*GB) gi|224147353|ref|XP_002336458.1| (e_value=6e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJL3|FKB65_ARATH (e_value=5e-115) Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1;; (*TAIR) AT5G48570.1 (e_value=4e-116) | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr5:19690746-19693656 REVERSE LENGTH=578;; (*ITAG) Solyc10g078260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59418175-59421171 transcript_region:SL2.40ch10:59418175..59421171- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *--- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00041711g0002.1 protein AED:0.39 eAED:0.39 QI:138|1|0.66|1|1|1|3|0|91; (*ITAG) Solyc02g082810.2.1 (e_value=9e-24) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00041711g0001.1 protein AED:0.70 eAED:0.87 QI:0|0|0|0.5|1|1|4|0|92; (*GB) gi|255561389|ref|XP_002521705.1| (e_value=3e-28) poly(A) polymerase, putative [Ricinus communis];; (*TAIR) AT2G17580.1 (e_value=4e-19) | Symbols: | Polynucleotide adenylyltransferase family protein | chr2:7646507-7650066 FORWARD LENGTH=757;; (*ITAG) Solyc02g082810.2.1 (e_value=3e-35) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00036490g0001.1 protein AED:0.11 eAED:0.11 QI:176|1|0.5|1|0|0|2|0|776; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=0.0) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=0.0) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc05g053090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00022862g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|599|541; (*GB) gi|85068630|gb|ABC69395.1| (e_value=0.0) CYP71D47v2 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26320.1 (e_value=2e-129) | Symbols: CYP71B36 | cytochrome P450, family 71, subfamily B, polypeptide 36 | chr3:9644383-9646064 REVERSE LENGTH=500;; (*ITAG) Solyc06g066240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37945395-37948992 transcript_region:SL2.40ch06:37945395..37948992- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00036259g0013.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0|0.66|3|450|193; (*GB) gi|194466195|gb|ACF74328.1| (e_value=3e-71) hypoxanthine phosphoribosyltransferase [Arachis hypogaea];; (*SWP) sp|Q839B2|HPRT_ENTFA (e_value=6e-33) Hypoxanthine-guanine phosphoribosyltransferase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=hpt PE=3 SV=1;; (*TAIR) AT1G71750.1 (e_value=2e-60) | Symbols: HGPT | Hypoxanthine-guanine phosphoribosyltransferase | chr1:26987954-26989144 REVERSE LENGTH=188;; (*ITAG) Solyc00g009060.2.1 (e_value=2e-86) genomic_reference:SL2.40ch00 gene_region:8772359-8774693 transcript_region:SL2.40ch00:8772359..8774693+ go_terms:GO:0005737,GO:0009116 functional_description:"Hypoxanthine phosphoribosyltransferase (AHRD V1 ***- B4UWA8_ARAHY); contains Interpro domain(s) IPR005904 Hypoxanthine phosphoribosyl transferase "; GO:0005737,GO:0009116 NbS00036259g0015.1 protein AED:0.06 eAED:0.09 QI:0|0.14|0|1|0.28|0.25|8|0|1008; (*GB) gi|255572297|ref|XP_002527087.1| (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT1G34110.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:12417331-12421246 REVERSE LENGTH=1072;; (*ITAG) Solyc00g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8783468-8787035 transcript_region:SL2.40ch00:8783468..8787035- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00036259g0008.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|111; (*ITAG) Solyc00g009070.1.1 (e_value=9e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:8775151-8775537 transcript_region:SL2.40ch00:8775151..8775537- functional_description:"Unknown Protein (AHRD V1)"; NbS00036259g0014.1 protein AED:0.11 eAED:0.47 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|225463081|ref|XP_002263332.1| (e_value=2e-41) PREDICTED: uncharacterized protein LOC100245899 [Vitis vinifera];; (*TAIR) AT1G71730.1 (e_value=1e-32) | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:26986298-26986831 REVERSE LENGTH=177;; (*ITAG) Solyc00g009080.2.1 (e_value=4e-27) genomic_reference:SL2.40ch00 gene_region:8777405-8778182 transcript_region:SL2.40ch00:8777405..8778182+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039862g0004.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.2|0.88|0.8|10|0|477; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-17) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094740.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00052138g0007.1 protein AED:0.11 eAED:0.16 QI:0|0.33|0.25|1|1|1|4|0|367; (*GB) gi|359480018|ref|XP_002273034.2| (e_value=6e-88) PREDICTED: structural maintenance of chromosomes protein 1A-like [Vitis vinifera];; (*SWP) sp|O94383|SMC1_SCHPO (e_value=3e-44) Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm1 PE=1 SV=1;; (*TAIR) AT3G54670.1 (e_value=9e-80) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1238;; (*ITAG) Solyc06g083870.2.1 (e_value=2e-98) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00052138g0008.1 protein AED:0.35 eAED:0.35 QI:30|0.5|0.28|0.57|0.66|0.85|7|0|410; (*GB) gi|224085641|ref|XP_002307647.1| (e_value=1e-167) condensin complex components subunit [Populus trichocarpa];; (*SWP) sp|Q9CU62|SMC1A_MOUSE (e_value=6e-59) Structural maintenance of chromosomes protein 1A OS=Mus musculus GN=Smc1a PE=1 SV=4;; (*TAIR) AT3G54670.1 (e_value=9e-144) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1238;; (*ITAG) Solyc06g083870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00001064g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.5|1|0.8|0.66|6|336|374; (*GB) gi|6685068|gb|AAF23770.1|AF205858_1 (e_value=0.0) FtsZ-like protein 2 [Nicotiana tabacum];; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=1e-139) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=9e-141) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=8e-155) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00001064g0013.1 protein AED:0.04 eAED:0.04 QI:216|0.77|0.6|1|0.44|0.5|10|119|732; (*GB) gi|83281191|dbj|BAE53680.1| (e_value=0.0) putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum];; (*SWP) sp|Q9SZ11|GLPQ2_ARATH (e_value=0.0) Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3;; (*TAIR) AT4G26690.1 (e_value=0.0) | Symbols: SHV3, MRH5, GPDL2 | PLC-like phosphodiesterase family protein | chr4:13456793-13459890 REVERSE LENGTH=759;; (*ITAG) Solyc12g014570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5569788-5576277 transcript_region:SL2.40ch12:5569788..5576277+ go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7MKI0_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0006629,GO:0006071 NbS00001064g0011.1 protein AED:0.25 eAED:0.25 QI:210|0.83|0.85|1|0.66|0.57|7|504|237; (*GB) gi|225460841|ref|XP_002277100.1| (e_value=2e-120) PREDICTED: syntaxin-51 [Vitis vinifera];; (*SWP) sp|Q94KK7|SYP52_ARATH (e_value=4e-105) Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1;; (*TAIR) AT1G79590.2 (e_value=3e-106) | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 | chr1:29947064-29948304 FORWARD LENGTH=233;; (*ITAG) Solyc07g065030.2.1 (e_value=4e-117) genomic_reference:SL2.40ch07 gene_region:64189984-64193334 transcript_region:SL2.40ch07:64189984..64193334+ go_terms:GO:0005484 functional_description:"Syntaxin-8 (AHRD V1 ***- C1C0H0_9MAXI); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00001064g0102.1 protein AED:0.15 eAED:0.16 QI:695|0.77|0.7|1|0.88|0.8|10|0|662 NbS00001064g0108.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.57|1|0.66|0.71|7|0|820 NbS00002571g0006.1 protein AED:0.29 eAED:0.29 QI:21|1|0.9|1|0.77|0.8|10|696|557; (*GB) gi|356514298|ref|XP_003525843.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 1-like [Glycine max];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=1e-26) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G43100.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631;; (*ITAG) Solyc10g044740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23139489-23149227 transcript_region:SL2.40ch10:23139489..23149227+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00016526g0005.1 protein AED:0.16 eAED:0.16 QI:284|1|1|1|0.33|0.42|7|254|912; (*GB) gi|225450634|ref|XP_002278233.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264914 [Vitis vinifera];; (*TAIR) AT3G58650.1 (e_value=2e-86) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). | chr3:21696349-21699219 REVERSE LENGTH=820;; (*ITAG) Solyc01g100290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82127098-82132121 transcript_region:SL2.40ch01:82127098..82132121+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016526g0004.1 protein AED:0.43 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|86; (*ITAG) Solyc06g072450.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41080201-41080725 transcript_region:SL2.40ch06:41080201..41080725- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00019732g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|363; (*GB) gi|296089673|emb|CBI39492.3| (e_value=4e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=2e-57) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT2G02070.1 (e_value=8e-61) | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain 5 | chr2:505523-509154 FORWARD LENGTH=602;; (*ITAG) Solyc01g099340.2.1 (e_value=5e-102) genomic_reference:SL2.40ch01 gene_region:81384148-81388335 transcript_region:SL2.40ch01:81384148..81388335+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbC23407105g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|36 NbS00000852g0020.1 protein AED:0.25 eAED:0.25 QI:0|1|0.33|1|1|0.66|3|0|151; (*GB) gi|350537475|ref|NP_001234039.1| (e_value=4e-91) expressed predominantly in leaves [Solanum lycopersicum];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=2e-24) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=6e-77) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc02g078500.2.1 (e_value=6e-105) genomic_reference:SL2.40ch02 gene_region:37743413-37745908 transcript_region:SL2.40ch02:37743413..37745908+ functional_description:"Aluminum-induced protein-like (AHRD V1 ***- Q9FG81_ARATH)"; NbS00000852g0017.1 protein AED:0.22 eAED:0.26 QI:144|0.77|0.8|1|1|1|10|40|319; (*GB) gi|359497050|ref|XP_002267854.2| (e_value=8e-82) PREDICTED: splicing factor U2af large subunit B-like, partial [Vitis vinifera];; (*SWP) sp|Q9ZR39|U2A2A_NICPL (e_value=3e-71) Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1;; (*TAIR) AT4G36690.4 (e_value=7e-71) | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294139-17297609 REVERSE LENGTH=551;; (*ITAG) Solyc12g008750.1.1 (e_value=2e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2109108-2115828 transcript_region:SL2.40ch12:2109108..2115828+ go_terms:GO:0003676,GO:0005634,GO:0000166 functional_description:"Splicing factor U2AF subunit (AHRD V1 ***- C5FT14_NANOT); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0003676,GO:0005634,GO:0000166 NbS00000852g0019.1 protein AED:0.38 eAED:0.38 QI:13|1|1|1|1|1|4|271|127; (*GB) gi|359497129|ref|XP_003635431.1| (e_value=1e-42) PREDICTED: splicing factor U2af large subunit B-like, partial [Vitis vinifera];; (*SWP) sp|Q8L716|U2A2B_ARATH (e_value=4e-37) Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2;; (*TAIR) AT1G60900.1 (e_value=3e-38) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc02g085570.2.1 (e_value=6e-31) genomic_reference:SL2.40ch02 gene_region:42978856-42984886 transcript_region:SL2.40ch02:42978856..42984886+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00000852g0008.1 protein AED:0.64 eAED:0.64 QI:0|0.5|0.2|0.8|1|1|5|0|323; (*GB) gi|296084705|emb|CBI25847.3| (e_value=1e-103) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g078470.2.1 (e_value=3e-57) genomic_reference:SL2.40ch02 gene_region:37715585-37718968 transcript_region:SL2.40ch02:37715585..37718968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000852g0018.1 protein AED:0.81 eAED:0.82 QI:0|0|0|0.33|1|1|3|0|125 NbS00000852g0010.1 protein AED:0.65 eAED:1.00 QI:0|0|0|1|1|1|2|0|378; (*GB) gi|225470340|ref|XP_002267812.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100248155 [Vitis vinifera]; NbS00000852g0021.1 protein AED:0.60 eAED:0.62 QI:22|0.5|0.33|1|0.5|0.33|3|0|92; (*GB) gi|147802915|emb|CAN66172.1| (e_value=1e-23) hypothetical protein VITISV_000730 [Vitis vinifera];; (*TAIR) AT2G33385.2 (e_value=1e-19) | Symbols: arpc2b | actin-related protein C2B | chr2:14147604-14149769 REVERSE LENGTH=374;; (*ITAG) Solyc09g090550.2.1 (e_value=6e-35) genomic_reference:SL2.40ch09 gene_region:65388721-65393519 transcript_region:SL2.40ch09:65388721..65393519+ go_terms:GO:0005198 functional_description:"Actin related protein 2/3 complex subunit 2 (AHRD V1 ***- D8RD91_SELML); contains Interpro domain(s) IPR007188 Arp2/3 complex, 34kDa subunit p34-Arc "; GO:0005198 NbS00056589g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|224140703|ref|XP_002323718.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=9e-120) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=6e-114) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=2e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00056589g0003.1 protein AED:0.44 eAED:0.48 QI:0|0|0|1|0|0|2|0|66 NbS00002788g0004.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0|0.66|1|0.66|3|0|349; (*GB) gi|356510080|ref|XP_003523768.1| (e_value=8e-49) PREDICTED: symplekin-like [Glycine max];; (*TAIR) AT1G27595.1 (e_value=2e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961;; (*ITAG) Solyc04g076910.2.1 (e_value=4e-134) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00031288g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|96; (*ITAG) Solyc10g011680.2.1 (e_value=7e-20) genomic_reference:SL2.40ch10 gene_region:3938645-3939176 transcript_region:SL2.40ch10:3938645..3939176- functional_description:"Unknown Protein (AHRD V1)"; NbS00031288g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.71|1|0.83|0.85|7|0|1005; (*GB) gi|359489834|ref|XP_002276685.2| (e_value=0.0) PREDICTED: protein SUPPRESSOR OF PHYA-105 1-like [Vitis vinifera];; (*SWP) sp|Q9SYX2|SPA1_ARATH (e_value=0.0) Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1;; (*TAIR) AT2G46340.1 (e_value=0.0) | Symbols: SPA1 | SPA (suppressor of phyA-105) protein family | chr2:19022572-19026821 REVERSE LENGTH=1029;; (*ITAG) Solyc10g011690.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3968798-3975239 transcript_region:SL2.40ch10:3968798..3975239+ go_terms:GO:0042802 functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND80_GLOVI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00031288g0011.1 protein AED:0.24 eAED:0.24 QI:375|1|1|1|0.71|0.75|8|944|354; (*GB) gi|83283981|gb|ABC01898.1| (e_value=0.0) mitochondrial carrier-like protein [Solanum tuberosum];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=5e-62) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT4G01100.1 (e_value=0.0) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=352;; (*ITAG) Solyc10g011670.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3930840-3938154 transcript_region:SL2.40ch10:3930840..3938154+ go_terms:GO:0015228 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015228 NbS00032222g0008.1 protein AED:0.31 eAED:0.37 QI:45|1|0.33|1|1|0.66|3|0|163; (*GB) gi|224112122|ref|XP_002316090.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93V72|E13L4_ARATH (e_value=4e-24) Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1;; (*TAIR) AT1G69295.1 (e_value=3e-25) | Symbols: PDCB4 | plasmodesmata callose-binding protein 4 | chr1:26050492-26051843 REVERSE LENGTH=222;; (*ITAG) Solyc05g012380.2.1 (e_value=7e-51) genomic_reference:SL2.40ch05 gene_region:5639430-5642259 transcript_region:SL2.40ch05:5639430..5642259- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00032222g0007.1 protein AED:0.23 eAED:0.25 QI:0|0.78|0.75|1|0.84|0.8|20|416|749; (*GB) gi|224108884|ref|XP_002315003.1| (e_value=3e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8KZP5|MHPC_COMTE (e_value=8e-15) 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Comamonas testosteroni GN=mhpC PE=1 SV=1;; (*TAIR) AT1G13820.1 (e_value=8e-151) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:4735622-4737617 FORWARD LENGTH=339;; (*ITAG) Solyc05g012370.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5634334-5638589 transcript_region:SL2.40ch05:5634334..5638589+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MJQ7_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00000471g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|224064862|ref|XP_002301588.1| (e_value=6e-122) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=7e-93) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=5e-94) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00000471g0010.1 protein AED:0.41 eAED:0.71 QI:0|0|0|1|0|0.5|2|0|141; (*ITAG) Solyc12g006130.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00000471g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|153 NbS00000471g0009.1 protein AED:0.15 eAED:0.15 QI:0|0|0.33|1|1|1|3|0|301; (*GB) gi|115802|sp|P27494.1|CB23_TOBAC (e_value=0.0) RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic; AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags: Precursor;; (*SWP) sp|P27494|CB23_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1;; (*TAIR) AT2G05100.1 (e_value=2e-171) | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823449-1824331 REVERSE LENGTH=265;; (*ITAG) Solyc12g006140.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:693217-694582 transcript_region:SL2.40ch12:693217..694582- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 37, chloroplastic (AHRD V1 ***- CB26_PETSP); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00000471g0005.1 protein AED:0.37 eAED:0.49 QI:20|-1|0|1|-1|0|1|0|101; (*GB) gi|224064862|ref|XP_002301588.1| (e_value=5e-18) f-box family protein [Populus trichocarpa];; (*TAIR) AT3G07870.1 (e_value=3e-13) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=8e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00050002g0002.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=1e-35) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=2e-21) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=1e-22) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc11g072140.1.1 (e_value=1e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52465079-52467632 transcript_region:SL2.40ch11:52465079..52467632- go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00008925g0002.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|193; (*GB) gi|225425678|ref|XP_002269829.1| (e_value=5e-65) PREDICTED: uncharacterized protein LOC100246544 [Vitis vinifera];; (*TAIR) AT1G56423.1 (e_value=3e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21129075-21130558 FORWARD LENGTH=270;; (*ITAG) Solyc01g079460.2.1 (e_value=2e-107) genomic_reference:SL2.40ch01 gene_region:71024681-71025697 transcript_region:SL2.40ch01:71024681..71025697- functional_description:"Unknown Protein (AHRD V1)"; NbS00026141g0009.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|356575634|ref|XP_003555943.1| (e_value=5e-49) PREDICTED: uncharacterized protein LOC100795681 [Glycine max];; (*TAIR) AT2G01300.1 (e_value=1e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc05g008360.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2720439-2720873 transcript_region:SL2.40ch05:2720439..2720873+ functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00026141g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|224101811|ref|XP_002312430.1| (e_value=3e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01300.1 (e_value=2e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc05g008360.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2720439-2720873 transcript_region:SL2.40ch05:2720439..2720873+ functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00022390g0001.1 protein AED:0.20 eAED:0.20 QI:235|1|0.66|1|1|1|3|0|545; (*GB) gi|255539685|ref|XP_002510907.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51640.1 (e_value=0.0) | Symbols: YLS7, TBL17 | Plant protein of unknown function (DUF828) | chr5:20975401-20977378 REVERSE LENGTH=501;; (*ITAG) Solyc03g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1713303-1718753 transcript_region:SL2.40ch03:1713303..1718753+ functional_description:"Leaf senescence protein-like (AHRD V1 **-- Q8LQG0_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00039238g0005.1 protein AED:0.08 eAED:0.08 QI:457|1|0.83|1|0.8|0.66|6|0|539; (*GB) gi|147839162|emb|CAN76926.1| (e_value=0.0) hypothetical protein VITISV_043993 [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=2e-67) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc07g027020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:33214854-33219582 transcript_region:SL2.40ch07:33214854..33219582- go_terms:GO:0005840,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005840,GO:0006468 NbS00050255g0001.1 protein AED:0.31 eAED:0.31 QI:315|0.5|0.33|1|1|1|3|0|65 NbS00026910g0004.1 protein AED:0.22 eAED:0.22 QI:158|1|1|1|1|1|4|154|148; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=3e-102) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=9e-104) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=1e-90) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00022695g0001.1 protein AED:0.27 eAED:0.34 QI:371|1|0.5|1|0|0|2|199|484; (*GB) gi|225429143|ref|XP_002274729.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100259947 isoform 1 [Vitis vinifera];; (*TAIR) AT2G22795.1 (e_value=4e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). | chr2:9697380-9699584 REVERSE LENGTH=734;; (*ITAG) Solyc01g106680.2.1 (e_value=2e-149) genomic_reference:SL2.40ch01 gene_region:86218643-86220652 transcript_region:SL2.40ch01:86218643..86220652+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022695g0011.1 protein AED:0.17 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|434; (*GB) gi|224063407|ref|XP_002301131.1| (e_value=8e-125) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10020.1 (e_value=2e-114) | Symbols: | Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461;; (*ITAG) Solyc01g106690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86223502-86225341 transcript_region:SL2.40ch01:86223502..86225341- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00022695g0013.1 protein AED:0.12 eAED:0.21 QI:0|0.5|0.33|1|0.5|0.66|3|0|150; (*GB) gi|225429141|ref|XP_002270633.1| (e_value=2e-67) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10 [Vitis vinifera];; (*SWP) sp|Q9ZVK1|XTH10_ARATH (e_value=2e-62) Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1;; (*TAIR) AT2G14620.1 (e_value=1e-63) | Symbols: XTH10 | xyloglucan endotransglucosylase/hydrolase 10 | chr2:6244889-6246010 FORWARD LENGTH=299;; (*ITAG) Solyc01g106650.2.1 (e_value=3e-82) genomic_reference:SL2.40ch01 gene_region:86194907-86196328 transcript_region:SL2.40ch01:86194907..86196328- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 6 (AHRD V1 **** C0IRG5_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00022695g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|217; (*GB) gi|225429161|ref|XP_002270964.1| (e_value=6e-84) PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-55) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=2e-56) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=2e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00009569g0012.1 protein AED:0.16 eAED:0.16 QI:181|0.75|0.8|1|0.75|1|5|529|608; (*GB) gi|225444019|ref|XP_002281594.1| (e_value=2e-149) PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Vitis vinifera];; (*SWP) sp|A9LNK9|CPSF_ARATH (e_value=2e-109) Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1;; (*TAIR) AT1G30460.1 (e_value=2e-110) | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631;; (*ITAG) Solyc02g070240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34567760-34582177 transcript_region:SL2.40ch02:34567760..34582177- go_terms:GO:0005516,GO:0003723 functional_description:"mRNA 3'-end-processing protein YTH1 (AHRD V1 *--- YTH1_USTMA); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005516,GO:0003723 NbS00009569g0009.1 protein AED:0.24 eAED:0.24 QI:359|1|1|1|1|1|4|165|210; (*GB) gi|255584612|ref|XP_002533030.1| (e_value=2e-113) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G34690.1 (e_value=7e-105) | Symbols: ACD11 | Glycolipid transfer protein (GLTP) family protein | chr2:14630425-14631779 FORWARD LENGTH=206;; (*ITAG) Solyc02g070250.2.1 (e_value=5e-142) genomic_reference:SL2.40ch02 gene_region:34583999-34589182 transcript_region:SL2.40ch02:34583999..34589182- go_terms:GO:0005515,GO:0010175 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-- GLTD1_DANRE); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0005515,GO:0010175 NbS00051183g0002.1 protein AED:0.02 eAED:0.02 QI:162|0.5|0.33|0.66|1|1|3|0|266; (*GB) gi|255545716|ref|XP_002513918.1| (e_value=2e-73) Protein brittle-1, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q20799|CMC2_CAEEL (e_value=3e-13) Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1;; (*TAIR) AT1G78180.1 (e_value=1e-57) | Symbols: | Mitochondrial substrate carrier family protein | chr1:29416919-29418525 FORWARD LENGTH=418;; (*ITAG) Solyc04g074130.2.1 (e_value=7e-123) genomic_reference:SL2.40ch04 gene_region:57726028-57733813 transcript_region:SL2.40ch04:57726028..57733813+ go_terms:GO:0030233 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10QM8_ORYSJ); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00059057g0001.1 protein AED:0.13 eAED:0.13 QI:245|1|1|1|1|1|9|344|249; (*GB) gi|33413303|emb|CAE22480.1| (e_value=2e-145) superoxide dismutase [Fe] [Solanum lycopersicum];; (*SWP) sp|P22302|SODF_NICPL (e_value=1e-138) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G51100.1 (e_value=9e-101) | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305;; (*ITAG) Solyc06g048410.2.1 (e_value=3e-148) genomic_reference:SL2.40ch06 gene_region:27497752-27500186 transcript_region:SL2.40ch06:27497752..27500186+ go_terms:GO:0008965,GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR019833 Manganese/iron superoxide dismutase, binding site IPR001189 Manganese/iron superoxide dismutase "; GO:0008965,GO:0004784 NbS00014305g0003.1 protein AED:0.01 eAED:0.01 QI:257|1|1|1|1|1|5|360|488; (*GB) gi|225458024|ref|XP_002276993.1| (e_value=0.0) PREDICTED: ATP sulfurylase 2 [Vitis vinifera];; (*SWP) sp|Q43870|APS2_ARATH (e_value=0.0) ATP sulfurylase 2 OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1;; (*TAIR) AT1G19920.1 (e_value=0.0) | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr1:6914835-6916657 REVERSE LENGTH=476;; (*ITAG) Solyc03g005260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:148411-153101 transcript_region:SL2.40ch03:148411..153101- go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00034588g0011.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0.5|0|3|0|199; (*GB) gi|350539197|ref|NP_001233868.1| (e_value=8e-90) 12-oxophytodienoate reductase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FEX0|OPRL_SOLLC (e_value=2e-91) 12-oxophytodienoate reductase-like protein OS=Solanum lycopersicum GN=OPR2 PE=2 SV=1;; (*TAIR) AT1G76690.1 (e_value=3e-65) | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reductase 2 | chr1:28778976-28780355 FORWARD LENGTH=374;; (*ITAG) Solyc01g103390.2.1 (e_value=2e-92) genomic_reference:SL2.40ch01 gene_region:83760511-83763127 transcript_region:SL2.40ch01:83760511..83763127- go_terms:GO:0008152,GO:0016491 functional_description:"Flavin oxidoreductase/NADH oxidase (AHRD V1 **-- A0YMI2_LYNSP); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0008152,GO:0016491 NbS00034588g0009.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|0|0.5|2|0|122; (*GB) gi|225465191|ref|XP_002263798.1| (e_value=4e-21) PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera];; (*SWP) sp|Q8GWR3|QKIL5_ARATH (e_value=2e-15) KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1;; (*TAIR) AT1G09660.1 (e_value=2e-16) | Symbols: | RNA-binding KH domain-containing protein | chr1:3128032-3130791 REVERSE LENGTH=298;; (*ITAG) Solyc09g031930.2.1 (e_value=3e-13) genomic_reference:SL2.40ch09 gene_region:24228433-24236165 transcript_region:SL2.40ch09:24228433..24236165+ go_terms:GO:0005515,GO:0003727 functional_description:"KH domain containing RNA binding signal transduction associated 1 (AHRD V1 *--* Q29RQ2_BOVIN); contains Interpro domain(s) IPR004088 K Homology, type 1 "; GO:0005515,GO:0003727 NbS00034588g0013.1 protein AED:0.29 eAED:0.33 QI:0|0.8|0.5|1|0.8|0.83|6|0|246; (*GB) gi|225465191|ref|XP_002263798.1| (e_value=2e-110) PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera];; (*SWP) sp|Q8GWR3|QKIL5_ARATH (e_value=2e-88) KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1;; (*TAIR) AT1G09660.1 (e_value=2e-89) | Symbols: | RNA-binding KH domain-containing protein | chr1:3128032-3130791 REVERSE LENGTH=298;; (*ITAG) Solyc01g103410.2.1 (e_value=6e-152) genomic_reference:SL2.40ch01 gene_region:83770913-83781702 transcript_region:SL2.40ch01:83770913..83781702- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6T8Q7_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00034588g0002.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.33|1|1|3|0|124 NbS00056083g0001.1 protein AED:0.37 eAED:0.37 QI:188|0|0.5|1|0|0.5|2|0|260; (*GB) gi|356499871|ref|XP_003518759.1| (e_value=2e-75) PREDICTED: uncharacterized protein LOC100499984 [Glycine max];; (*TAIR) AT3G29270.2 (e_value=5e-70) | Symbols: | RING/U-box superfamily protein | chr3:11235326-11236117 FORWARD LENGTH=263;; (*ITAG) Solyc05g012560.1.1 (e_value=3e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:5787614-5788408 transcript_region:SL2.40ch05:5787614..5788408- go_terms:GO:0004842 functional_description:"RING zinc finger protein-like (AHRD V1 **-- Q9LHJ7_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00056083g0007.1 protein AED:0.18 eAED:0.21 QI:0|0.54|0.5|1|0.81|0.75|12|0|687; (*GB) gi|147815439|emb|CAN63833.1| (e_value=1e-95) hypothetical protein VITISV_009131 [Vitis vinifera];; (*SWP) sp|Q9FZP1|HPSE3_ARATH (e_value=5e-72) Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2;; (*TAIR) AT5G34940.2 (e_value=4e-73) | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235912-13238718 REVERSE LENGTH=536;; (*ITAG) Solyc05g012550.2.1 (e_value=5e-131) genomic_reference:SL2.40ch05 gene_region:5785174-5787462 transcript_region:SL2.40ch05:5785174..5787462+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00020830g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|1|1|3|0|852; (*GB) gi|225441327|ref|XP_002276357.1| (e_value=0.0) PREDICTED: triacylglycerol lipase SDP1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LZA6|SDP1_ARATH (e_value=0.0) Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1;; (*TAIR) AT5G04040.1 (e_value=0.0) | Symbols: SDP1 | Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825;; (*ITAG) Solyc10g079410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60273615-60276422 transcript_region:SL2.40ch10:60273615..60276422+ go_terms:GO:0006629,GO:0008152,GO:0005525 functional_description:"Patatin-like phospholipase domain-containing protein c (AHRD V1 *--- B6K1H8_SCHJY); contains Interpro domain(s) IPR006689 ARF/SAR superfamily "; GO:0006629,GO:0008152,GO:0005525 NbS00010254g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|447; (*GB) gi|225447555|ref|XP_002269014.1| (e_value=2e-179) PREDICTED: transcriptional regulator STERILE APETALA [Vitis vinifera];; (*SWP) sp|Q9FKH1|SAP_ARATH (e_value=2e-163) Transcriptional regulator STERILE APETALA OS=Arabidopsis thaliana GN=SAP PE=1 SV=1;; (*TAIR) AT5G35770.1 (e_value=2e-164) | Symbols: SAP | Transducin/WD40 repeat-like superfamily protein | chr5:13936457-13940786 REVERSE LENGTH=446;; (*ITAG) Solyc05g041220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:49689825-49694366 transcript_region:SL2.40ch05:49689825..49694366+ go_terms:GO:0003700 functional_description:"Transcriptional regulator STERILE APETALA (AHRD V1 ***- SAP_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0003700 NbS00011122g0018.1 protein AED:0.27 eAED:0.27 QI:235|1|1|1|0.88|0.8|10|568|300; (*GB) gi|118572820|sp|Q3HVN1.1|AGUB_SOLTU (e_value=0.0) RecName: Full=N-carbamoylputrescine amidase;; (*SWP) sp|Q3HVN1|AGUB_SOLTU (e_value=0.0) N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1;; (*TAIR) AT2G27450.1 (e_value=0.0) | Symbols: NLP1, ATNLP1, CPA | nitrilase-like protein 1 | chr2:11737666-11739577 REVERSE LENGTH=299;; (*ITAG) Solyc11g068540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50313861-50320110 transcript_region:SL2.40ch11:50313861..50320110- go_terms:GO:0006807,GO:0006596 functional_description:"N-carbamoylputrescine amidase (AHRD V1 **-- D3NU88_AZOS1); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase IPR017755 N-carbamoylputrescine amidase "; GO:0006807,GO:0006596 NbS00011122g0022.1 protein AED:0.40 eAED:0.53 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|364285547|gb|AEW48191.1| (e_value=1e-19) disease resistance protein RGH2 [Solanum chacoense];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-16) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46730.1 (e_value=5e-15) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc11g006530.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1186571-1189847 transcript_region:SL2.40ch11:1186571..1189847- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00011122g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|307; (*GB) gi|359479553|ref|XP_002273863.2| (e_value=8e-60) PREDICTED: uncharacterized protein LOC100243219 [Vitis vinifera];; (*ITAG) Solyc11g068530.1.1 (e_value=8e-97) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50309985-50310962 transcript_region:SL2.40ch11:50309985..50310962+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMR2_ARATH)"; NbS00011122g0019.1 protein AED:0.35 eAED:0.35 QI:0|1|0.8|1|1|1|5|0|486; (*GB) gi|110676572|gb|ABG85154.1| (e_value=0.0) RhoGAP1 [Nicotiana tabacum];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=6e-23) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT5G22400.1 (e_value=3e-172) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466;; (*ITAG) Solyc11g068520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50302920-50308182 transcript_region:SL2.40ch11:50302920..50308182+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00011122g0028.1 protein AED:0.40 eAED:0.40 QI:25|0|0|0.5|1|0.5|2|0|168; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-21) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00011122g0027.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|1|1|2|0|81; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00011122g0013.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.33|1|1|3|0|74 NbS00011122g0023.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|157 NbS00011122g0029.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|86; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00011122g0021.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|84 NbS00008941g0010.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|79; (*GB) gi|289066828|ref|YP_003434346.1| (e_value=1e-33) RNA polymerase beta' subunit [Vigna radiata];; (*SWP) sp|A7Y3B4|RPOC2_IPOPU (e_value=4e-35) DNA-directed RNA polymerase subunit beta'' OS=Ipomoea purpurea GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=2e-35) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc03g095380.1.1 (e_value=4e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49935395-49936986 transcript_region:SL2.40ch03:49935395..49936986+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WBD0_9BORA); contains Interpro domain(s) IPR007081 RNA polymerase Rpb1, domain 5 "; GO:0006350 NbS00008941g0022.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.42|1|0.5|0.71|7|0|326; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=0.0) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=0.0) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.1 (e_value=4e-171) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc12g042740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00008941g0019.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|2|0|537; (*GB) gi|255553255|ref|XP_002517670.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=4e-91) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=3e-92) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc06g068200.1.1 (e_value=5e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38641511-38643830 transcript_region:SL2.40ch06:38641511..38643830- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00008941g0020.1 protein AED:0.49 eAED:0.72 QI:0|0|0|1|0|0|2|0|99 NbS00026438g0002.1 protein AED:0.00 eAED:0.00 QI:395|1|1|1|0.5|0.66|3|0|96; (*GB) gi|350540104|ref|NP_001234133.1| (e_value=5e-41) phytochromobilin synthase [Solanum lycopersicum];; (*SWP) sp|Q9SR43|PFBS_ARATH (e_value=3e-21) Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1;; (*TAIR) AT3G09150.2 (e_value=2e-22) | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) | chr3:2803665-2805333 FORWARD LENGTH=329;; (*ITAG) Solyc01g008930.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:2948574-2955890 transcript_region:SL2.40ch01:2948574..2955890- go_terms:GO:0050619 functional_description:"Phycoerythrobilin ferredoxin oxidoreductase (AHRD V1 **** Q6E5A3_MAIZE); contains Interpro domain(s) IPR009249 Ferredoxin-dependent bilin reductase "; GO:0050619 NbS00001802g0009.1 protein AED:0.02 eAED:0.02 QI:278|1|0.8|1|0.75|0.8|5|0|124; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=2e-59) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=4e-57) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049520.1.1 (e_value=6e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46608538-46609796 transcript_region:SL2.40ch12:46608538..46609796- functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 **-- Q7GDB1_ARATH)"; NbS00001802g0011.1 protein AED:0.28 eAED:0.29 QI:51|0.66|0.75|1|0.66|0.75|4|0|727; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=6e-53) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.2 (e_value=1e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1). | chr3:4698860-4704773 REVERSE LENGTH=1262;; (*ITAG) Solyc12g049510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46599025-46605833 transcript_region:SL2.40ch12:46599025..46605833- functional_description:"Erect panical 2 (AHRD V1 *--- B8B8K3_ORYSI)"; NbS00001802g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.2|1|1|0.8|5|318|610; (*GB) gi|297742959|emb|CBI35826.3| (e_value=9e-172) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=2e-85) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46599025-46605833 transcript_region:SL2.40ch12:46599025..46605833- functional_description:"Erect panical 2 (AHRD V1 *--- B8B8K3_ORYSI)"; NbS00035392g0013.1 protein AED:0.20 eAED:0.20 QI:239|0.71|0.75|0.87|0.71|0.75|8|0|427; (*GB) gi|255546609|ref|XP_002514364.1| (e_value=1e-174) 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q38854|DXS_ARATH (e_value=3e-113) 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2;; (*TAIR) AT5G11380.2 (e_value=4e-161) | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate synthase 3 | chr5:3630172-3632762 FORWARD LENGTH=565;; (*ITAG) Solyc08g066950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53032479-53046037 transcript_region:SL2.40ch08:53032479..53046037+ go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 3 (AHRD V1 **** D7M3Q0_ARALY); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00035392g0003.1 protein AED:0.14 eAED:0.14 QI:123|0.5|0.6|0.8|1|1|5|0|506; (*GB) gi|225429973|ref|XP_002281412.1| (e_value=4e-156) PREDICTED: probable peptide transporter At1g52190 [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=7e-128) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=6e-129) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc08g066940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53019905-53022956 transcript_region:SL2.40ch08:53019905..53022956- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00035392g0014.1 protein AED:0.30 eAED:0.30 QI:33|0.6|0.16|1|0.6|0.83|6|0|315; (*GB) gi|225429975|ref|XP_002283985.1| (e_value=3e-140) PREDICTED: bark storage protein A [Vitis vinifera];; (*SWP) sp|Q07469|BSPA_POPDE (e_value=7e-22) Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1;; (*TAIR) AT4G28940.1 (e_value=4e-117) | Symbols: | Phosphorylase superfamily protein | chr4:14274414-14276920 FORWARD LENGTH=348;; (*ITAG) Solyc08g066880.2.1 (e_value=1e-78) genomic_reference:SL2.40ch08 gene_region:52973903-52974812 transcript_region:SL2.40ch08:52973903..52974812- go_terms:GO:0009116 functional_description:"5&apos-methylthioadenosine/S-adenosylhomocysteine nucleosidase (AHRD V1 *-*- D6E0Z8_9FIRM); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0009116 NbS00035392g0015.1 protein AED:0.59 eAED:0.59 QI:0|0.5|0|0.66|1|1|3|0|110; (*GB) gi|225429975|ref|XP_002283985.1| (e_value=6e-26) PREDICTED: bark storage protein A [Vitis vinifera];; (*TAIR) AT4G28940.1 (e_value=1e-19) | Symbols: | Phosphorylase superfamily protein | chr4:14274414-14276920 FORWARD LENGTH=348;; (*ITAG) Solyc08g066890.2.1 (e_value=1e-40) genomic_reference:SL2.40ch08 gene_region:52975833-52976248 transcript_region:SL2.40ch08:52975833..52976248- functional_description:"Unknown Protein (AHRD V1)"; NbS00013301g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.85|0.75|1|0.71|0.87|8|513|253; (*GB) gi|255571823|ref|XP_002526854.1| (e_value=3e-136) peroxisomal membrane protein pmp34, putative [Ricinus communis];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=1e-44) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=4e-129) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=2e-146) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00048319g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.90|0.83|1|1|1|12|473|710; (*GB) gi|255578190|ref|XP_002529963.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT2G46700.1 (e_value=0.0) | Symbols: ATCRK3, CRK3 | CDPK-related kinase 3 | chr2:19182968-19186430 REVERSE LENGTH=595;; (*ITAG) Solyc01g096350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79178171-79188731 transcript_region:SL2.40ch01:79178171..79188731- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase-like protein (AHRD V1 **** Q9FIM9_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00048319g0003.1 protein AED:0.52 eAED:0.60 QI:0|0|0|0.75|1|1|4|0|164; (*TAIR) AT3G61900.1 (e_value=1e-15) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22925813-22926379 FORWARD LENGTH=136;; (*ITAG) Solyc01g096340.2.1 (e_value=2e-21) genomic_reference:SL2.40ch01 gene_region:79175401-79176134 transcript_region:SL2.40ch01:79175401..79176134+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00061116g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|152; (*ITAG) Solyc05g005320.1.1 (e_value=4e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:250443-250922 transcript_region:SL2.40ch05:250443..250922- functional_description:"Unknown Protein (AHRD V1)"; NbS00016266g0004.1 protein AED:0.00 eAED:0.00 QI:304|1|1|1|0.5|0.66|3|266|340; (*GB) gi|224126005|ref|XP_002319732.1| (e_value=7e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=3e-35) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G69560.1 (e_value=4e-67) | Symbols: MYB105, LOF2, ATMYB105 | myb domain protein 105 | chr1:26157755-26158906 FORWARD LENGTH=330;; (*ITAG) Solyc10g081320.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61747299-61749497 transcript_region:SL2.40ch10:61747299..61749497+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9C5P9_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00026838g0002.1 protein AED:0.01 eAED:0.01 QI:201|1|0.66|1|1|1|6|392|354; (*GB) gi|359488195|ref|XP_002272597.2| (e_value=6e-86) PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera];; (*SWP) sp|Q6YW64|DRB4_ORYSJ (e_value=1e-31) Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1;; (*TAIR) AT1G09700.1 (e_value=6e-22) | Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419;; (*ITAG) Solyc02g091460.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:47322847-47328996 transcript_region:SL2.40ch02:47322847..47328996- go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUP9_BRAOB); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00045264g0003.1 protein AED:0.28 eAED:0.35 QI:0|0.2|0.16|1|0|0.16|6|0|218 NbS00027811g0005.1 protein AED:0.08 eAED:0.08 QI:201|0.85|0.86|1|0.35|0.33|15|2037|493; (*GB) gi|312281727|dbj|BAJ33729.1| (e_value=2e-126) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=3e-126) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=2e-127) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc03g118070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61101249-61108353 transcript_region:SL2.40ch03:61101249..61108353+ go_terms:GO:0005515,GO:0030295 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0005515,GO:0030295 NbS00027811g0002.1 protein AED:0.15 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|429; (*GB) gi|255540011|ref|XP_002511070.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FLS9|PP441_ARATH (e_value=6e-163) Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1;; (*TAIR) AT5G61800.1 (e_value=5e-164) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24830054-24831553 REVERSE LENGTH=499;; (*ITAG) Solyc03g118080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61108338-61110201 transcript_region:SL2.40ch03:61108338..61110201- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9E6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00032724g0003.1 protein AED:0.32 eAED:0.37 QI:0|0.2|0.5|1|0.2|0|6|302|166; (*GB) gi|255547770|ref|XP_002514942.1| (e_value=2e-14) protein with unknown function [Ricinus communis];; (*TAIR) AT5G20165.1 (e_value=3e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1242 (InterPro:IPR009653); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:6805803-6806730 REVERSE LENGTH=70;; (*ITAG) Solyc03g118140.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:61152862-61154053 transcript_region:SL2.40ch03:61152862..61154053+ functional_description:"Protein kish-A (AHRD V1 **-- KISHA_CHICK); contains Interpro domain(s) IPR009653 Protein of unknown function DUF1242 "; NbS00038668g0001.1 protein AED:0.27 eAED:0.28 QI:0|1|0.88|1|0.87|0.77|9|1246|276; (*GB) gi|225461459|ref|XP_002282417.1| (e_value=5e-61) PREDICTED: uncharacterized protein LOC100246918 [Vitis vinifera];; (*TAIR) AT1G53040.2 (e_value=4e-40) | Symbols: | Protein of unknown function (DUF616) | chr1:19764567-19766870 REVERSE LENGTH=540;; (*ITAG) Solyc07g063150.2.1 (e_value=7e-66) genomic_reference:SL2.40ch07 gene_region:62942287-62946443 transcript_region:SL2.40ch07:62942287..62946443+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *--- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00002951g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|69 NbS00029063g0004.1 protein AED:0.24 eAED:0.25 QI:0|0.5|0.2|1|1|0.8|5|0|363; (*GB) gi|255555301|ref|XP_002518687.1| (e_value=6e-175) d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|O04130|SERA_ARATH (e_value=2e-149) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=4e-170) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc03g112070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56655923-56660333 transcript_region:SL2.40ch03:56655923..56660333- go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00021794g0006.1 protein AED:0.27 eAED:0.41 QI:33|0.16|0.07|0.23|1|1|13|0|504; (*GB) gi|359487944|ref|XP_002265918.2| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100260652 [Vitis vinifera];; (*TAIR) AT4G08630.1 (e_value=1e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 1487 Blast hits to 747 proteins in 184 species: Archae - 0; Bacteria - 56; Metazoa - 305; Fungi - 197; Plants - 180; Viruses - 3; Other Eukaryotes - 746 (source: NCBI BLink). | chr4:5506998-5511959 REVERSE LENGTH=845;; (*ITAG) Solyc10g037940.1.1 (e_value=2e-95) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:17926015-17927048 transcript_region:SL2.40ch10:17926015..17927048- functional_description:"Unknown Protein (AHRD V1)"; NbS00002364g0009.1 protein AED:0.30 eAED:0.34 QI:72|1|0.33|1|0.5|0.66|3|0|64; (*GB) gi|225427377|ref|XP_002282974.1| (e_value=3e-40) PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera];; (*SWP) sp|Q9XHE4|RL37A_GOSHI (e_value=1e-40) 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=4e-41) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=5e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00002364g0001.1 protein AED:0.28 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|255540781|ref|XP_002511455.1| (e_value=2e-53) Peroxidase 65 precursor, putative [Ricinus communis];; (*SWP) sp|O23609|PER41_ARATH (e_value=1e-51) Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1;; (*TAIR) AT4G17690.1 (e_value=1e-52) | Symbols: | Peroxidase superfamily protein | chr4:9846127-9847107 FORWARD LENGTH=326;; (*ITAG) Solyc08g007150.1.1 (e_value=8e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1708656-1709615 transcript_region:SL2.40ch08:1708656..1709615- go_terms:GO:0004601 functional_description:"Peroxidase 65 (AHRD V1 **** C7E9R8_BRACM); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00002364g0008.1 protein AED:0.35 eAED:0.37 QI:0|0.75|0.4|0.8|0.75|0.6|5|0|154; (*GB) gi|225466649|ref|XP_002273174.1| (e_value=2e-78) PREDICTED: calcineurin B-like protein 01 [Vitis vinifera];; (*SWP) sp|O81445|CNBL1_ARATH (e_value=2e-73) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.2 (e_value=2e-75) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817981-9818995 FORWARD LENGTH=171;; (*ITAG) Solyc08g007160.2.1 (e_value=1e-91) genomic_reference:SL2.40ch08 gene_region:1710704-1715488 transcript_region:SL2.40ch08:1710704..1715488- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00002364g0010.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|0|0|3|0|201; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-27) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc10g047840.1.1 (e_value=2e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00040758g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.2|0.8|1|1|5|0|374; (*GB) gi|133711803|gb|ABO36621.1| (e_value=0.0) mitochondrial carrier protein [Solanum lycopersicum];; (*SWP) sp|Q93XM7|MCAT_ARATH (e_value=1e-156) Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1;; (*TAIR) AT5G46800.1 (e_value=1e-157) | Symbols: BOU | Mitochondrial substrate carrier family protein | chr5:18988779-18989810 REVERSE LENGTH=300;; (*ITAG) Solyc10g079200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60110983-60112071 transcript_region:SL2.40ch10:60110983..60112071- go_terms:GO:0016020 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- B1N662_SOLLC); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00040758g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|133711808|gb|ABO36626.1| (e_value=6e-42) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=6e-18) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=4e-19) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc10g079220.2.1 (e_value=1e-44) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00041593g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.7|1|0.55|0.6|10|0|459; (*GB) gi|62822992|gb|AAY15214.1| (e_value=0.0) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=5e-89) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT5G06839.3 (e_value=1e-146) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g078670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59726600-59732997 transcript_region:SL2.40ch10:59726600..59732997- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00037501g0026.1 protein AED:0.03 eAED:0.03 QI:52|0.8|0.83|1|1|1|6|101|405; (*GB) gi|255547289|ref|XP_002514702.1| (e_value=2e-56) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GZ38|UNE10_ARATH (e_value=4e-29) Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1;; (*TAIR) AT4G00050.1 (e_value=3e-30) | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17863-19848 FORWARD LENGTH=399;; (*ITAG) Solyc06g069600.1.1 (e_value=7e-103) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39735370-39737463 transcript_region:SL2.40ch06:39735370..39737463+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor EB (AHRD V1 *-*- TFEB_MOUSE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00037501g0022.1 protein AED:0.07 eAED:0.07 QI:709|1|1|1|0.5|0.33|3|445|539; (*GB) gi|225457305|ref|XP_002281450.1| (e_value=5e-120) PREDICTED: uncharacterized protein LOC100263964 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=4e-17) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT1G26580.1 (e_value=1e-51) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493;; (*ITAG) Solyc06g069560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:39701636-39702883 transcript_region:SL2.40ch06:39701636..39702883+ go_terms:GO:0003677 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00037501g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|409; (*GB) gi|2346988|dbj|BAA21928.1| (e_value=3e-131) ZPT4-4 [Petunia x hybrida];; (*SWP) sp|Q9SHD0|ZAT4_ARATH (e_value=1e-23) Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1;; (*TAIR) AT2G45120.1 (e_value=1e-24) | Symbols: | C2H2-like zinc finger protein | chr2:18603680-18604624 FORWARD LENGTH=314;; (*ITAG) Solyc03g115450.1.1 (e_value=5e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59208867-59210204 transcript_region:SL2.40ch03:59208867..59210204+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00037501g0025.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.2|0.8|0.5|0.4|5|0|190; (*GB) gi|297733907|emb|CBI15154.3| (e_value=1e-35) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G61280.1 (e_value=2e-24) | Symbols: | Remorin family protein | chr5:24643625-24644910 REVERSE LENGTH=263;; (*ITAG) Solyc06g069590.2.1 (e_value=2e-78) genomic_reference:SL2.40ch06 gene_region:39732003-39733099 transcript_region:SL2.40ch06:39732003..39733099+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00037501g0027.1 protein AED:0.35 eAED:0.35 QI:0|0.6|0.16|1|0.6|0.33|6|0|320; (*GB) gi|359495908|ref|XP_002272814.2| (e_value=3e-110) PREDICTED: serine/threonine-protein kinase At3g07070-like [Vitis vinifera];; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=4e-33) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT1G51940.1 (e_value=2e-66) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651;; (*ITAG) Solyc06g069610.1.1 (e_value=5e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39741466-39744893 transcript_region:SL2.40ch06:39741466..39744893+ go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00037501g0023.1 protein AED:0.37 eAED:0.42 QI:0|1|0.33|1|1|1|3|0|274; (*GB) gi|329025170|gb|AEB71568.1| (e_value=3e-121) SNAP33 [Solanum chacoense];; (*SWP) sp|Q9S7P9|SNP33_ARATH (e_value=5e-87) SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1;; (*TAIR) AT5G61210.1 (e_value=3e-88) | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | chr5:24624027-24625366 FORWARD LENGTH=300;; (*ITAG) Solyc06g069570.2.1 (e_value=2e-144) genomic_reference:SL2.40ch06 gene_region:39719238-39721943 transcript_region:SL2.40ch06:39719238..39721943+ go_terms:GO:0005484 functional_description:"SNAP25 homologous protein SNAP33 (AHRD V1 **-- SNP33_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00037501g0024.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.5|0.66|0.75|4|0|113; (*GB) gi|329025170|gb|AEB71568.1| (e_value=7e-15) SNAP33 [Solanum chacoense];; (*SWP) sp|Q9S7P9|SNP33_ARATH (e_value=2e-13) SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1;; (*TAIR) AT5G61210.1 (e_value=1e-14) | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | chr5:24624027-24625366 FORWARD LENGTH=300;; (*ITAG) Solyc03g115470.2.1 (e_value=7e-16) genomic_reference:SL2.40ch03 gene_region:59218266-59222031 transcript_region:SL2.40ch03:59218266..59222031+ go_terms:GO:0005484 functional_description:"Synaptosomal-associated protein 33 (AHRD V1 ***- D7MUI6_ARALY); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00037501g0008.1 protein AED:0.08 eAED:0.09 QI:196|0|0.5|1|0|0.5|2|0|493; (*GB) gi|356550993|ref|XP_003543864.1| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100789388 [Glycine max];; (*TAIR) AT5G61260.1 (e_value=3e-15) | Symbols: | Plant calmodulin-binding protein-related | chr5:24637109-24638599 FORWARD LENGTH=496;; (*ITAG) Solyc06g069620.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00037501g0036.1 protein AED:0.26 eAED:0.27 QI:0|0.62|0.55|1|0.5|0.33|9|0|491; (*GB) gi|255547277|ref|XP_002514696.1| (e_value=0.0) Heparanase-2, putative [Ricinus communis];; (*SWP) sp|Q9FF10|HPSE1_ARATH (e_value=0.0) Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1;; (*TAIR) AT5G07830.1 (e_value=0.0) | Symbols: AtGUS2, GUS2 | glucuronidase 2 | chr5:2504168-2506567 FORWARD LENGTH=543;; (*ITAG) Solyc06g069580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39722232-39727584 transcript_region:SL2.40ch06:39722232..39727584- go_terms:GO:0030305,GO:0004566 functional_description:"Heparanase-like protein 2 (AHRD V1 **** B6U6D3_MAIZE); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0030305,GO:0004566 NbS00042288g0003.1 protein AED:0.19 eAED:0.19 QI:388|1|1|1|0.66|0.57|7|363|272; (*GB) gi|317106613|dbj|BAJ53120.1| (e_value=4e-112) JHL07K02.10 [Jatropha curcas];; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=8e-21) Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2;; (*TAIR) AT1G01630.1 (e_value=3e-106) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc03g118150.2.1 (e_value=1e-150) genomic_reference:SL2.40ch03 gene_region:61156088-61158567 transcript_region:SL2.40ch03:61156088..61158567+ go_terms:GO:0008526 functional_description:"Sec14-like (Fragment) (AHRD V1 **-- Q6R655_MELLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00018308g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.88|0.78|0.94|0.88|0.94|19|0|763; (*GB) gi|225426498|ref|XP_002271527.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265120 [Vitis vinifera];; (*SWP) sp|Q5R5R2|HEAT6_PONAB (e_value=2e-20) HEAT repeat-containing protein 6 OS=Pongo abelii GN=HEATR6 PE=2 SV=1;; (*TAIR) AT4G38120.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:17888668-17896060 REVERSE LENGTH=1165;; (*ITAG) Solyc07g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3328517-3357899 transcript_region:SL2.40ch07:3328517..3357899- go_terms:GO:0005488 functional_description:"HEAT repeat-containing protein (AHRD V1 *-*- D3B2P5_POLPA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00054565g0014.1 protein AED:0.16 eAED:0.16 QI:196|1|1|1|0.8|0.83|6|664|487; (*GB) gi|255550387|ref|XP_002516244.1| (e_value=0.0) polygalacturonase, putative [Ricinus communis];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=6e-119) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT1G19170.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:6616777-6618875 FORWARD LENGTH=506;; (*ITAG) Solyc03g117750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60842903-60847365 transcript_region:SL2.40ch03:60842903..60847365- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00054565g0009.1 protein AED:0.14 eAED:0.19 QI:260|0.75|0.6|1|0.5|0.6|5|344|300; (*GB) gi|348162096|gb|AEP68099.1| (e_value=3e-170) cell-growth defect factor 1 [Nicotiana benthamiana];; (*TAIR) AT5G23040.1 (e_value=1e-111) | Symbols: CDF1 | Protein of unknown function (DUF3353) | chr5:7729465-7730930 REVERSE LENGTH=258;; (*ITAG) Solyc03g114470.2.1 (e_value=3e-152) genomic_reference:SL2.40ch03 gene_region:58517893-58522443 transcript_region:SL2.40ch03:58517893..58522443+ functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; NbS00054565g0008.1 protein AED:0.22 eAED:0.22 QI:159|1|1|1|0.6|0.66|6|440|310; (*GB) gi|225443239|ref|XP_002271931.1| (e_value=3e-158) PREDICTED: uncharacterized protein LOC100263834 [Vitis vinifera];; (*TAIR) AT1G16080.1 (e_value=8e-156) | Symbols: | unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:5514394-5515761 FORWARD LENGTH=313;; (*ITAG) Solyc03g117740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60839793-60842602 transcript_region:SL2.40ch03:60839793..60842602+ functional_description:"Chloroplast At1g16080 protein (Fragment) (AHRD V1 *-*- Q1HRY1_SOLLC)"; NbS00054565g0011.1 protein AED:0.40 eAED:0.63 QI:83|0|0|1|0|0|3|0|140; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=9e-19) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*ITAG) Solyc03g114480.2.1 (e_value=6e-32) genomic_reference:SL2.40ch03 gene_region:58522878-58524482 transcript_region:SL2.40ch03:58522878..58524482- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00044460g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.57|1|1|1|7|0|407; (*GB) gi|359492618|ref|XP_002282366.2| (e_value=0.0) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY37|PAT14_SOLTU (e_value=3e-102) Patatin-14 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=6e-167) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc02g090630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46756836-46759506 transcript_region:SL2.40ch02:46756836..46759506+ go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00016720g0016.1 protein AED:0.28 eAED:0.30 QI:0|0.25|0.2|0.8|0|0|5|0|175; (*GB) gi|4105137|gb|AAD02270.1| (e_value=6e-53) putative vetispiradiene synthase 5 [Solanum tuberosum];; (*SWP) sp|Q39979|VTSS2_HYOMU (e_value=3e-56) Vetispiradiene synthase 2 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1;; (*TAIR) AT3G32030.1 (e_value=4e-15) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:13032458-13035348 REVERSE LENGTH=604;; (*ITAG) Solyc01g101190.2.1 (e_value=6e-55) genomic_reference:SL2.40ch01 gene_region:82786563-82788821 transcript_region:SL2.40ch01:82786563..82788821+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00016720g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0|0|3|780|737; (*GB) gi|225450452|ref|XP_002276575.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g62590-like [Vitis vinifera];; (*SWP) sp|Q9FMF6|PP444_ARATH (e_value=4e-56) Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1;; (*TAIR) AT5G64320.1 (e_value=3e-57) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:25723247-25725439 REVERSE LENGTH=730;; (*ITAG) Solyc01g101150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82756619-82759013 transcript_region:SL2.40ch01:82756619..82759013+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016720g0013.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0.5|0.66|3|0|384; (*GB) gi|147780251|emb|CAN65744.1| (e_value=6e-24) hypothetical protein VITISV_037761 [Vitis vinifera];; (*TAIR) AT1G09520.1 (e_value=1e-18) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3071248-3072030 REVERSE LENGTH=260;; (*ITAG) Solyc01g101160.2.1 (e_value=1e-126) genomic_reference:SL2.40ch01 gene_region:82762441-82763945 transcript_region:SL2.40ch01:82762441..82763945+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016720g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|1|1|3|0|656; (*GB) gi|255543024|ref|XP_002512575.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G61190.1 (e_value=7e-84) | Symbols: | putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain | chr5:24615480-24619886 FORWARD LENGTH=995;; (*ITAG) Solyc01g101140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82748479-82753118 transcript_region:SL2.40ch01:82748479..82753118+ functional_description:"LOC100005105 protein (Fragment) (AHRD V1 *-*- A4QNR9_DANRE); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00012816g0006.1 protein AED:0.26 eAED:0.26 QI:375|1|1|1|0.90|0.83|12|489|288; (*GB) gi|296086092|emb|CBI31533.3| (e_value=2e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=9e-56) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=6e-154) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=7e-177) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00005381g0012.1 protein AED:0.07 eAED:0.07 QI:687|1|1|1|1|1|2|129|380; (*GB) gi|356495719|ref|XP_003516721.1| (e_value=3e-146) PREDICTED: GDSL esterase/lipase At4g10955-like [Glycine max];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=1e-124) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT5G24230.1 (e_value=5e-136) | Symbols: | Lipase class 3-related protein | chr5:8229182-8230841 FORWARD LENGTH=369;; (*ITAG) Solyc03g083370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46763966-46765863 transcript_region:SL2.40ch03:46763966..46765863- functional_description:"Lipase class 3-like (AHRD V1 ***- Q6KA57_ORYSJ)"; NbS00005381g0015.1 protein AED:0.17 eAED:0.18 QI:289|1|0.66|1|0.5|1|3|0|598; (*GB) gi|225455386|ref|XP_002278061.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Vitis vinifera];; (*SWP) sp|Q9FK05|PME61_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1;; (*TAIR) AT5G53370.1 (e_value=0.0) | Symbols: ATPMEPCRF, PMEPCRF | pectin methylesterase PCR fragment F | chr5:21649683-21651530 REVERSE LENGTH=587;; (*ITAG) Solyc03g083360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46733407-46736826 transcript_region:SL2.40ch03:46733407..46736826- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9IDR8_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00005381g0014.1 protein AED:0.08 eAED:0.08 QI:213|1|1|1|0.5|0.33|3|349|579; (*GB) gi|225455384|ref|XP_002277933.1| (e_value=0.0) PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=2e-64) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT5G24240.1 (e_value=0.0) | Symbols: | Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein | chr5:8231110-8232925 REVERSE LENGTH=574;; (*ITAG) Solyc03g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46730445-46732792 transcript_region:SL2.40ch03:46730445..46732792+ go_terms:GO:0043008 functional_description:"Ubiquitin (AHRD V1 **-- Q9FNF8_ARATH); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00020253g0009.1 protein AED:0.18 eAED:0.18 QI:226|1|1|1|1|1|3|156|265; (*GB) gi|115794|sp|P27489.1|CB23_SOLLC (e_value=2e-176) RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic; AltName: Full=LHCII type III CAB-13; Flags: Precursor;; (*SWP) sp|P27489|CB23_SOLLC (e_value=7e-178) Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1;; (*TAIR) AT5G54270.1 (e_value=3e-170) | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038424-22039383 FORWARD LENGTH=265;; (*ITAG) Solyc07g063600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63262431-63264147 transcript_region:SL2.40ch07:63262431..63264147- go_terms:GO:0005198 functional_description:"Chlorophyll a-b binding protein 13, chloroplastic (AHRD V1 ***- CB23_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005198 NbS00020253g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.85|0.5|1|0.85|0.75|8|0|669; (*GB) gi|296086337|emb|CBI31778.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUW5|RH53_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1;; (*TAIR) AT3G22330.1 (e_value=0.0) | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616;; (*ITAG) Solyc07g044760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55130093-55135291 transcript_region:SL2.40ch07:55130093..55135291+ go_terms:GO:0003677 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003677 NbS00011186g0004.1 protein AED:0.35 eAED:0.35 QI:0|1|0.84|1|0.91|0.92|13|0|330; (*GB) gi|225445442|ref|XP_002285073.1| (e_value=1e-170) PREDICTED: NADH-cytochrome b5 reductase-like protein [Vitis vinifera];; (*SWP) sp|P83291|NCB5R_ARATH (e_value=3e-161) NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2;; (*TAIR) AT5G20080.1 (e_value=2e-162) | Symbols: | FAD/NAD(P)-binding oxidoreductase | chr5:6782708-6786360 FORWARD LENGTH=328;; (*ITAG) Solyc05g018520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22136142-22152397 transcript_region:SL2.40ch05:22136142..22152397- go_terms:GO:0004128 functional_description:"NADH-cytochrome b5 reductase-like protein (AHRD V1 **** B6TCK3_MAIZE); contains Interpro domain(s) IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase "; GO:0004128 NbS00027440g0011.1 protein AED:0.05 eAED:0.05 QI:453|1|1|1|0.85|0.75|8|578|462; (*GB) gi|255549256|ref|XP_002515682.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6N075|MFSD5_HUMAN (e_value=5e-71) Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2;; (*TAIR) AT4G27720.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:13831203-13833521 FORWARD LENGTH=460;; (*ITAG) Solyc03g082660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46115283-46120778 transcript_region:SL2.40ch03:46115283..46120778+ functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00027440g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|226|110; (*GB) gi|357464045|ref|XP_003602304.1| (e_value=5e-43) F-box/WD repeat-containing protein [Medicago truncatula];; (*ITAG) Solyc03g082670.2.1 (e_value=6e-66) genomic_reference:SL2.40ch03 gene_region:46119987-46121575 transcript_region:SL2.40ch03:46119987..46121575- functional_description:"F-box family protein-like (AHRD V1 *-*- Q5Z9H2_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027440g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.46|1|1|1|13|0|2203; (*GB) gi|183604839|gb|ACC64519.1| (e_value=0.0) neuroblastoma-amplified gene [Nicotiana benthamiana];; (*SWP) sp|A2RRP1|NBAS_HUMAN (e_value=2e-49) Neuroblastoma-amplified sequence OS=Homo sapiens GN=NBAS PE=1 SV=2;; (*TAIR) AT5G24350.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8301537-8310746 FORWARD LENGTH=2376;; (*ITAG) Solyc03g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46122780-46137496 transcript_region:SL2.40ch03:46122780..46137496- functional_description:"Neuroblastoma-amplified protein-like protein (AHRD V1 *-*- D2V0U7_NAEGR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00027440g0004.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|183604839|gb|ACC64519.1| (e_value=8e-103) neuroblastoma-amplified gene [Nicotiana benthamiana];; (*TAIR) AT5G24350.1 (e_value=1e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8301537-8310746 FORWARD LENGTH=2376;; (*ITAG) Solyc03g082680.2.1 (e_value=2e-76) genomic_reference:SL2.40ch03 gene_region:46122780-46137496 transcript_region:SL2.40ch03:46122780..46137496- functional_description:"Neuroblastoma-amplified protein-like protein (AHRD V1 *-*- D2V0U7_NAEGR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00007596g0011.1 protein AED:0.29 eAED:0.30 QI:192|0.66|0.5|1|0.66|0.5|4|0|173; (*GB) gi|225431749|ref|XP_002269805.1| (e_value=4e-76) PREDICTED: protein FAM136A [Vitis vinifera];; (*TAIR) AT2G31725.1 (e_value=4e-70) | Symbols: | Eukaryotic protein of unknown function (DUF842) | chr2:13486447-13487391 REVERSE LENGTH=149;; (*ITAG) Solyc08g014300.2.1 (e_value=1e-81) genomic_reference:SL2.40ch08 gene_region:4000950-4003880 transcript_region:SL2.40ch08:4000950..4003880+ go_terms:GO:0005515 functional_description:"FAM136A (AHRD V1 ***- B5XEE9_SALSA); contains Interpro domain(s) IPR008560 Protein of unknown function DUF842, eukaryotic "; GO:0005515 NbS00007596g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.4|0.5|1|1|1|6|0|777; (*GB) gi|359477750|ref|XP_002285371.2| (e_value=0.0) PREDICTED: tetratricopeptide repeat protein 7B-like [Vitis vinifera];; (*TAIR) AT4G28600.1 (e_value=0.0) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc06g053530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32812075-32821638 transcript_region:SL2.40ch06:32812075..32821638- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein MPCBP (AHRD V1 **-* B6U2D5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00007596g0012.1 protein AED:0.12 eAED:0.13 QI:6|1|0.5|1|1|1|2|111|153; (*GB) gi|18405251|ref|NP_565921.1| (e_value=2e-38) Clathrin light chain protein [Arabidopsis thaliana];; (*SWP) sp|O04209|CLC2_ARATH (e_value=7e-40) Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1;; (*TAIR) AT2G40060.1 (e_value=5e-41) | Symbols: | Clathrin light chain protein | chr2:16726564-16728001 FORWARD LENGTH=258;; (*ITAG) Solyc09g014450.2.1 (e_value=4e-55) genomic_reference:SL2.40ch09 gene_region:6067468-6071263 transcript_region:SL2.40ch09:6067468..6071263+ go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00044611g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.57|0.62|0.87|0.57|0.62|8|263|441; (*GB) gi|356573261|ref|XP_003554781.1| (e_value=8e-140) PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine max];; (*SWP) sp|Q4P8R9|PABP_USTMA (e_value=1e-22) Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1;; (*TAIR) AT4G00830.3 (e_value=2e-134) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352842-354965 FORWARD LENGTH=467;; (*ITAG) Solyc10g009220.2.1 (e_value=8e-161) genomic_reference:SL2.40ch10 gene_region:3215593-3225768 transcript_region:SL2.40ch10:3215593..3225768+ go_terms:GO:0017091 functional_description:"Polyadenylate-binding protein 4-like (AHRD V1 *--* PAB4L_HUMAN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0017091 NbS00044611g0009.1 protein AED:0.08 eAED:0.24 QI:0|0|0|1|0|0|2|0|265 NbS00014905g0003.1 protein AED:0.26 eAED:0.50 QI:384|0.4|0.33|1|0.2|0.5|6|0|106; (*ITAG) Solyc03g096190.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51516314-51519526 transcript_region:SL2.40ch03:51516314..51519526+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00026479g0008.1 protein AED:0.06 eAED:0.06 QI:107|1|1|1|0.66|0.5|4|293|679; (*GB) gi|359486139|ref|XP_002265418.2| (e_value=0.0) PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera];; (*SWP) sp|Q9SY66|FRS11_ARATH (e_value=0.0) Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1;; (*TAIR) AT1G10240.1 (e_value=0.0) | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680;; (*ITAG) Solyc01g103180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83609493-83613702 transcript_region:SL2.40ch01:83609493..83613702+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00026479g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.6|1|0.5|0.2|5|411|475; (*GB) gi|85068658|gb|ABC69409.1| (e_value=0.0) CYP71AT2v2 [Nicotiana tabacum];; (*SWP) sp|O65782|C83B1_ARATH (e_value=5e-152) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1;; (*TAIR) AT4G31500.1 (e_value=4e-153) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc09g092640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66987311-66989373 transcript_region:SL2.40ch09:66987311..66989373+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007030g0015.1 protein AED:0.02 eAED:0.02 QI:149|0.88|0.9|1|0.77|0.9|10|411|1955; (*GB) gi|225461935|ref|XP_002265993.1| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100241254 [Vitis vinifera];; (*TAIR) AT5G55820.1 (e_value=3e-28) | Symbols: | CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22586287-22594035 FORWARD LENGTH=1826;; (*ITAG) Solyc07g065600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64517382-64527961 transcript_region:SL2.40ch07:64517382..64527961+ functional_description:"Genomic DNA chromosome 5 P1 clone MDF20 (AHRD V1 *-*- Q9FM57_ARATH)"; NbS00007030g0001.1 protein AED:0.45 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|147799284|emb|CAN76998.1| (e_value=2e-22) hypothetical protein VITISV_007763 [Vitis vinifera];; (*SWP) sp|Q9FHG4|LRKS7_ARATH (e_value=8e-19) Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1;; (*TAIR) AT5G55830.1 (e_value=6e-20) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:22594655-22596700 FORWARD LENGTH=681;; (*ITAG) Solyc07g065610.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64532046-64534046 transcript_region:SL2.40ch07:64532046..64534046+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00007030g0017.1 protein AED:0.05 eAED:0.05 QI:82|0.83|0.85|1|0.66|0.71|7|172|684; (*GB) gi|296089929|emb|CBI39748.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LG26|PARN_ARATH (e_value=0.0) Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2;; (*TAIR) AT1G55870.1 (e_value=0.0) | Symbols: ATPARN, AHG2 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:20895663-20898359 FORWARD LENGTH=689;; (*ITAG) Solyc07g065620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64535444-64540160 transcript_region:SL2.40ch07:64535444..64540160- go_terms:GO:0004540 functional_description:"Poly(A)-specific ribonuclease PARN-like protein (AHRD V1 *-** D0N750_PHYIN); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0004540 NbS00007030g0016.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|0|0|2|0|518; (*GB) gi|147799284|emb|CAN76998.1| (e_value=0.0) hypothetical protein VITISV_007763 [Vitis vinifera];; (*SWP) sp|Q9FHG4|LRKS7_ARATH (e_value=0.0) Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1;; (*TAIR) AT5G55830.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:22594655-22596700 FORWARD LENGTH=681;; (*ITAG) Solyc07g065610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64532046-64534046 transcript_region:SL2.40ch07:64532046..64534046+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00060797g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|356548473|ref|XP_003542626.1| (e_value=5e-20) PREDICTED: uncharacterized protein LOC100804202 [Glycine max];; (*TAIR) AT5G14890.1 (e_value=4e-14) | Symbols: | NHL domain-containing protein | chr5:4818056-4821534 FORWARD LENGTH=754;; (*ITAG) Solyc07g007130.1.1 (e_value=6e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1887074-1887550 transcript_region:SL2.40ch07:1887074..1887550- functional_description:"NHL repeat-containing protein (AHRD V1 **-- D7M6N9_ARALY)"; NbS00021929g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.66|1|0.87|0.88|9|0|474; (*GB) gi|359493891|ref|XP_003634688.1| (e_value=1e-155) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FL69|AGD5_ARATH (e_value=8e-115) Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1;; (*TAIR) AT5G54310.1 (e_value=6e-116) | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483;; (*ITAG) Solyc10g006850.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1283178-1290235 transcript_region:SL2.40ch10:1283178..1290235- go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00009728g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.85|1|0.83|0.57|7|1090|381; (*GB) gi|225438942|ref|XP_002279446.1| (e_value=2e-135) PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera];; (*TAIR) AT2G23093.1 (e_value=2e-113) | Symbols: | Major facilitator superfamily protein | chr2:9832193-9834416 FORWARD LENGTH=449;; (*ITAG) Solyc02g092660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48247968-48253873 transcript_region:SL2.40ch02:48247968..48253873+ functional_description:"Major facilitator superfamily domain-containing protein (AHRD V1 ***- C9SAV7_VERA1); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00009728g0007.1 protein AED:0.17 eAED:0.17 QI:304|1|1|1|1|1|10|684|333; (*GB) gi|44804336|emb|CAD26882.1| (e_value=0.0) protein kinase CK2 alpha subunit [Nicotiana tabacum];; (*SWP) sp|Q08467|CSK21_ARATH (e_value=0.0) Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3;; (*TAIR) AT5G67380.1 (e_value=0.0) | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | chr5:26881156-26883383 REVERSE LENGTH=409;; (*ITAG) Solyc02g092640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48238108-48244942 transcript_region:SL2.40ch02:48238108..48244942+ go_terms:GO:0006468 functional_description:"Casein kinase (AHRD V1 ***- C5JNY0_AJEDS); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00009728g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0|2|231|765; (*GB) gi|148299083|gb|ABQ58079.1| (e_value=0.0) subtilisin-like protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc02g092670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:48256556-48258820 transcript_region:SL2.40ch02:48256556..48258820- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00051558g0003.1 protein AED:0.14 eAED:0.14 QI:240|1|0.75|1|0.66|0.75|4|0|324; (*GB) gi|311952|emb|CAA41253.1| (e_value=2e-167) 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris];; (*SWP) sp|P19684|ROC5_NICSY (e_value=1e-167) 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT3G52380.1 (e_value=5e-96) | Symbols: CP33, PDE322 | chloroplast RNA-binding protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329;; (*ITAG) Solyc01g006940.2.1 (e_value=3e-139) genomic_reference:SL2.40ch01 gene_region:1512591-1515492 transcript_region:SL2.40ch01:1512591..1515492+ go_terms:GO:0003743 functional_description:"Poly(U)-binding-splicing factor PUF60 (AHRD V1 *--* PUF60_BOVIN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003743 NbS00043310g0001.1 protein AED:0.21 eAED:0.21 QI:207|1|1|1|0.81|0.75|12|1590|446; (*GB) gi|224054791|ref|XP_002298365.1| (e_value=0.0) inner membrane protein [Populus trichocarpa];; (*SWP) sp|Q9FY06|PPF1_PEA (e_value=0.0) Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2;; (*TAIR) AT2G28800.1 (e_value=0.0) | Symbols: ALB3 | 63 kDa inner membrane family protein | chr2:12356669-12359158 REVERSE LENGTH=462;; (*ITAG) Solyc11g066110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48874291-48881169 transcript_region:SL2.40ch11:48874291..48881169+ go_terms:GO:0016021 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- B9L0L4_THERP); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0016021 NbS00043310g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|0|0.5|2|0|70; (*ITAG) Solyc11g066120.1.1 (e_value=6e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48882376-48882943 transcript_region:SL2.40ch11:48882376..48882943- functional_description:"Unknown Protein (AHRD V1)"; NbS00027622g0002.1 protein AED:0.33 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225426956|ref|XP_002267390.1| (e_value=3e-55) PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Vitis vinifera];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=3e-17) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT4G22580.1 (e_value=8e-50) | Symbols: | Exostosin family protein | chr4:11889382-11890689 REVERSE LENGTH=435;; (*ITAG) Solyc08g079040.1.1 (e_value=9e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59852908-59854221 transcript_region:SL2.40ch08:59852908..59854221- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8SQH4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00027622g0006.1 protein AED:0.01 eAED:0.04 QI:66|0.5|0.33|1|0.5|0.33|3|0|295; (*GB) gi|147819737|emb|CAN67303.1| (e_value=8e-82) hypothetical protein VITISV_000736 [Vitis vinifera];; (*TAIR) AT4G22600.1 (e_value=6e-60) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11900211-11901032 REVERSE LENGTH=273;; (*ITAG) Solyc08g079050.1.1 (e_value=2e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59858428-59859307 transcript_region:SL2.40ch08:59858428..59859307+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027622g0001.1 protein AED:0.45 eAED:0.50 QI:0|0|0|0.5|1|1|4|0|271; (*ITAG) Solyc08g044370.1.1 (e_value=8e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00017680g0007.1 protein AED:0.11 eAED:0.11 QI:657|1|0.88|1|0.62|0.55|9|0|480; (*GB) gi|225457753|ref|XP_002278084.1| (e_value=0.0) PREDICTED: transmembrane protein 184C [Vitis vinifera];; (*SWP) sp|Q6GQE1|T184C_XENLA (e_value=6e-51) Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1;; (*TAIR) AT1G77220.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF300) | chr1:29013232-29015530 FORWARD LENGTH=484;; (*ITAG) Solyc04g064850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55133469-55140024 transcript_region:SL2.40ch04:55133469..55140024+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00037698g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0|2|460|169; (*GB) gi|225453252|ref|XP_002266696.1| (e_value=1e-42) PREDICTED: uncharacterized protein LOC100244411 [Vitis vinifera];; (*TAIR) AT2G44600.1 (e_value=1e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18408845-18409786 FORWARD LENGTH=313;; (*ITAG) Solyc01g088530.2.1 (e_value=3e-88) genomic_reference:SL2.40ch01 gene_region:75065940-75067185 transcript_region:SL2.40ch01:75065940..75067185+ functional_description:"Transposon protein (AHRD V1 ***- B6TXP6_MAIZE)"; NbS00002186g0001.1 protein AED:0.29 eAED:0.31 QI:0|0|0.5|1|0|0.5|2|377|345; (*GB) gi|255538662|ref|XP_002510396.1| (e_value=7e-121) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q92383|MAG1_SCHPO (e_value=5e-26) DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1;; (*TAIR) AT1G19480.2 (e_value=9e-115) | Symbols: | DNA glycosylase superfamily protein | chr1:6744520-6745653 FORWARD LENGTH=377;; (*ITAG) Solyc02g062720.2.1 (e_value=1e-164) genomic_reference:SL2.40ch02 gene_region:29049276-29058096 transcript_region:SL2.40ch02:29049276..29058096- go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase 1 (AHRD V1 ***- B6U6Y8_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00002186g0102.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.85|1|1|1|7|0|576 NbS00002186g0111.1 protein AED:0.20 eAED:0.39 QI:0|0|0|1|0|0|2|0|203 NbS00059184g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|356495549|ref|XP_003516639.1| (e_value=4e-78) PREDICTED: nitrate transporter 1.5-like [Glycine max];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=7e-73) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=5e-74) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g077170.2.1 (e_value=4e-94) genomic_reference:SL2.40ch08 gene_region:58247937-58253733 transcript_region:SL2.40ch08:58247937..58253733+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00059184g0006.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|12|101|623; (*GB) gi|2497542|sp|Q40546.1|KPYG_TOBAC (e_value=0.0) RecName: Full=Pyruvate kinase isozyme G, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40546|KPYG_TOBAC (e_value=0.0) Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G32440.1 (e_value=0.0) | Symbols: PKp3 | plastidial pyruvate kinase 3 | chr1:11712205-11714963 FORWARD LENGTH=571;; (*ITAG) Solyc08g077180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58254085-58261125 transcript_region:SL2.40ch08:58254085..58261125- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q53WS7_TOBAC); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00018144g0009.1 protein AED:0.25 eAED:0.25 QI:382|0.8|0.83|1|0|0|6|217|49 NbS00018144g0001.1 protein AED:0.01 eAED:0.01 QI:585|1|0.5|1|0|0|2|0|655; (*GB) gi|356501374|ref|XP_003519500.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100798094 [Glycine max];; (*TAIR) AT2G26920.1 (e_value=3e-150) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr2:11489648-11491588 FORWARD LENGTH=646;; (*ITAG) Solyc06g073600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41794455-41796763 transcript_region:SL2.40ch06:41794455..41796763+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LFE2_ARALY); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00018144g0003.1 protein AED:0.14 eAED:0.14 QI:166|1|1|1|0.87|0.84|25|344|912; (*GB) gi|84688910|gb|ABC61504.1| (e_value=0.0) AGO4-1, partial [Nicotiana benthamiana];; (*SWP) sp|Q9ZVD5|AGO4_ARATH (e_value=0.0) Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2;; (*TAIR) AT2G27040.2 (e_value=0.0) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc06g073540.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41725477-41731304 transcript_region:SL2.40ch06:41725477..41731304+ go_terms:GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00018144g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.92|0.92|1|0.84|0.92|14|379|890; (*GB) gi|296083998|emb|CBI24386.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q659C4|LAR1B_HUMAN (e_value=3e-51) La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2;; (*TAIR) AT5G21160.1 (e_value=2e-172) | Symbols: | LA RNA-binding protein | chr5:7199191-7203879 REVERSE LENGTH=826;; (*ITAG) Solyc06g073550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41732229-41744562 transcript_region:SL2.40ch06:41732229..41744562+ functional_description:"La related protein-like (AHRD V1 **-- Q5NBG8_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00046866g0108.1 protein AED:0.54 eAED:0.84 QI:0|0|0|0.66|0|0.66|3|0|104 NbS00014247g0004.1 protein AED:0.46 eAED:0.62 QI:200|0.33|0.75|1|0|0|4|40|45 NbS00014247g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|1|4|0|246; (*GB) gi|225448679|ref|XP_002280180.1| (e_value=3e-108) PREDICTED: transcription factor RF2b [Vitis vinifera];; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=1e-78) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT1G06850.1 (e_value=2e-76) | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper 52 | chr1:2105233-2106518 FORWARD LENGTH=337;; (*ITAG) Solyc06g049040.2.1 (e_value=1e-121) genomic_reference:SL2.40ch06 gene_region:28806155-28810096 transcript_region:SL2.40ch06:28806155..28810096+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LF63_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00042149g0004.1 protein AED:0.15 eAED:0.15 QI:379|1|0.66|1|1|1|3|0|442; (*GB) gi|147856404|emb|CAN80321.1| (e_value=6e-11) hypothetical protein VITISV_020999 [Vitis vinifera];; (*ITAG) Solyc09g091120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65814321-65825428 transcript_region:SL2.40ch09:65814321..65825428- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00019110g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.33|3|0|198; (*GB) gi|255537091|ref|XP_002509612.1| (e_value=3e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45360.1 (e_value=8e-51) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc10g018200.1.1 (e_value=3e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7149308-7150820 transcript_region:SL2.40ch10:7149308..7150820- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00023595g0009.1 protein AED:0.41 eAED:0.41 QI:201|0.71|0.5|1|0.28|0.5|8|0|259; (*GB) gi|225438676|ref|XP_002282060.1| (e_value=3e-132) PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FV50|AMP1D_ARATH (e_value=2e-122) Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1;; (*TAIR) AT4G37040.1 (e_value=2e-123) | Symbols: MAP1D | methionine aminopeptidase 1D | chr4:17455175-17457085 FORWARD LENGTH=350;; (*ITAG) Solyc02g090670.2.1 (e_value=3e-154) genomic_reference:SL2.40ch02 gene_region:46778563-46785775 transcript_region:SL2.40ch02:46778563..46785775- go_terms:GO:0070006 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9H6F3_POPTR); contains Interpro domain(s) IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 "; GO:0070006 NbS00052457g0003.1 protein AED:0.48 eAED:0.58 QI:0|0.5|0|0.66|1|1|3|0|144; (*GB) gi|255573149|ref|XP_002527504.1| (e_value=1e-98) mitotic checkpoint protein bub3, putative [Ricinus communis];; (*SWP) sp|Q9WVA3|BUB3_MOUSE (e_value=3e-46) Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2;; (*TAIR) AT3G19590.1 (e_value=4e-89) | Symbols: BUB3.1 | Transducin/WD40 repeat-like superfamily protein | chr3:6805798-6808374 FORWARD LENGTH=340;; (*ITAG) Solyc01g107160.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:86534713-86540689 transcript_region:SL2.40ch01:86534713..86540689+ go_terms:GO:0008017 functional_description:"Mitotic checkpoint protein BUB3 (AHRD V1 **-- B6UH61_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008017 NbS00046932g0004.1 protein AED:0.40 eAED:0.41 QI:0|0.8|0.5|1|0.6|0.66|6|0|302; (*GB) gi|225441674|ref|XP_002282707.1| (e_value=1e-174) PREDICTED: uncharacterized protein C4orf29 homolog [Vitis vinifera];; (*SWP) sp|Q8C1A9|CD029_MOUSE (e_value=5e-23) Uncharacterized protein C4orf29 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT3G12150.1 (e_value=2e-154) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr3:3876688-3878621 REVERSE LENGTH=363;; (*ITAG) Solyc03g064030.2.1 (e_value=3e-180) genomic_reference:SL2.40ch03 gene_region:34614329-34620105 transcript_region:SL2.40ch03:34614329..34620105- go_terms:GO:0005515 functional_description:"C4orf29 homolog (AHRD V1 **-- B5X1A7_SALSA); contains Interpro domain(s) IPR019149 Protein of unknown function DUF2048 "; GO:0005515 NbS00059177g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0.33|1|0.5|0.66|3|205|375; (*GB) gi|225459507|ref|XP_002284432.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100245359 [Vitis vinifera];; (*SWP) sp|Q9SLG9|PI5K5_ARATH (e_value=1e-16) Phosphatidylinositol 4-phosphate 5-kinase 5 OS=Arabidopsis thaliana GN=PIP5K5 PE=2 SV=1;; (*TAIR) AT1G21920.1 (e_value=7e-69) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr1:7704454-7705866 REVERSE LENGTH=417;; (*ITAG) Solyc06g060410.2.1 (e_value=3e-117) genomic_reference:SL2.40ch06 gene_region:34813419-34815588 transcript_region:SL2.40ch06:34813419..34815588+ go_terms:GO:0005515 functional_description:"MORN repeat protein (AHRD V1 *--- A3SI83_9RHOB); contains Interpro domain(s) IPR003409 MORN motif "; GO:0005515 NbS00025794g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|136 NbS00025794g0002.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|1|1|2|0|358; (*GB) gi|225459101|ref|XP_002283863.1| (e_value=5e-97) PREDICTED: uncharacterized protein LOC100260770 [Vitis vinifera];; (*SWP) sp|O13633|YNF5_SCHPO (e_value=7e-13) Uncharacterized J domain-containing protein C17A3.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pi041 PE=1 SV=1;; (*TAIR) AT5G64360.1 (e_value=1e-43) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=422;; (*ITAG) Solyc04g076270.1.1 (e_value=4e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58789804-58790922 transcript_region:SL2.40ch04:58789804..58790922- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6JZX2_SCHJY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00025794g0008.1 protein AED:0.20 eAED:0.25 QI:39|0.5|0.66|1|1|0.66|3|476|133; (*ITAG) Solyc04g076250.2.1 (e_value=3e-27) genomic_reference:SL2.40ch04 gene_region:58779098-58781511 transcript_region:SL2.40ch04:58779098..58781511- functional_description:"Unknown Protein (AHRD V1)"; NbS00025794g0010.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.2|1|1|5|0|76 NbS00033607g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.6|1|0.75|0.6|5|231|605; (*GB) gi|28273100|dbj|BAC56916.1| (e_value=0.0) nitrate transporter [Nicotiana tabacum];; (*SWP) sp|Q05085|PTR7_ARATH (e_value=0.0) Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1;; (*TAIR) AT1G12110.1 (e_value=0.0) | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | nitrate transporter 1.1 | chr1:4105341-4109290 FORWARD LENGTH=590;; (*ITAG) Solyc06g060620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35034535-35037617 transcript_region:SL2.40ch06:35034535..35037617+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q852P5_TOBAC); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00043038g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|98; (*ITAG) Solyc03g025820.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7591561-7601490 transcript_region:SL2.40ch03:7591561..7601490+ functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 ***- Q9FHD0_ARATH)"; NbS00021940g0002.1 protein AED:0.24 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|239; (*GB) gi|255568581|ref|XP_002525264.1| (e_value=5e-111) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FJX6|FH6_ARATH (e_value=4e-90) Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1;; (*TAIR) AT5G67470.1 (e_value=3e-91) | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:26926835-26930212 FORWARD LENGTH=899;; (*ITAG) Solyc03g044060.2.1 (e_value=9e-132) genomic_reference:SL2.40ch03 gene_region:11841335-11845214 transcript_region:SL2.40ch03:11841335..11845214- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00055257g0009.1 protein AED:0.42 eAED:0.42 QI:315|0.8|0.83|1|0.6|0.66|6|0|143; (*GB) gi|297733851|emb|CBI15098.3| (e_value=2e-29) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZWS6|ARR6_ARATH (e_value=1e-27) Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2;; (*TAIR) AT5G62920.1 (e_value=9e-29) | Symbols: ARR6 | response regulator 6 | chr5:25252745-25254158 REVERSE LENGTH=186;; (*ITAG) Solyc03g113720.2.1 (e_value=9e-37) genomic_reference:SL2.40ch03 gene_region:57836552-57838432 transcript_region:SL2.40ch03:57836552..57838432- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00055257g0010.1 protein AED:0.14 eAED:0.16 QI:232|0.94|0.83|0.94|0.88|0.88|18|0|643; (*GB) gi|122172235|sp|Q0GZS3.1|USP_CUCME (e_value=0.0) RecName: Full=UDP-sugar pyrophospharylase; AltName: Full=UDP-galactose/glucose pyrophosphorylase; Short=UGGPase;; (*SWP) sp|Q0GZS3|USP_CUCME (e_value=0.0) UDP-sugar pyrophospharylase OS=Cucumis melo GN=USP PE=1 SV=1;; (*TAIR) AT5G52560.1 (e_value=0.0) | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase | chr5:21331230-21334573 FORWARD LENGTH=614;; (*ITAG) Solyc04g058070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54328964-54342003 transcript_region:SL2.40ch04:54328964..54342003+ go_terms:GO:0008152 functional_description:"UDP-N-acetylglucosamine-pyrophosphorylase (AHRD V1 ***- A8HP64_CHLRE); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0008152 NbS00000432g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|318; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=1e-131) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=3e-133) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=2e-99) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=6e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00000432g0009.1 protein AED:0.10 eAED:0.10 QI:51|0.5|0.42|1|0.66|0.57|7|0|439; (*GB) gi|224072801|ref|XP_002303888.1| (e_value=8e-150) AP2 domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q5YGP8|PLET1_ARATH (e_value=7e-134) AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1;; (*TAIR) AT3G20840.1 (e_value=6e-135) | Symbols: PLT1 | Integrase-type DNA-binding superfamily protein | chr3:7300764-7303370 FORWARD LENGTH=574;; (*ITAG) Solyc11g061750.1.1 (e_value=6e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45463808-45467453 transcript_region:SL2.40ch11:45463808..45467453+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00061253g0001.1 protein AED:0.00 eAED:0.00 QI:196|1|0.66|1|0|0|3|193|71; (*GB) gi|255577161|ref|XP_002529464.1| (e_value=5e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G55125.2 (e_value=9e-32) | Symbols: | Ribosomal protein L31 | chr5:22372737-22372967 FORWARD LENGTH=76;; (*ITAG) Solyc11g068490.1.1 (e_value=9e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50278529-50278717 transcript_region:SL2.40ch11:50278529..50278717- functional_description:"cDNA clone J013021P22 full insert sequence (AHRD V1 ***- B7EAV4_ORYSJ)"; NbS00061253g0007.1 protein AED:0.00 eAED:0.00 QI:79|1|1|1|1|1|3|269|198; (*GB) gi|388510360|gb|AFK43246.1| (e_value=1e-42) unknown [Lotus japonicus];; (*SWP) sp|Q9JKP7|DPOE3_MOUSE (e_value=5e-12) DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1;; (*TAIR) AT2G27470.1 (e_value=1e-36) | Symbols: NF-YB11 | nuclear factor Y, subunit B11 | chr2:11745196-11746375 REVERSE LENGTH=275;; (*ITAG) Solyc11g068480.1.1 (e_value=1e-73) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50274716-50277634 transcript_region:SL2.40ch11:50274716..50277634+ go_terms:GO:0003677,GO:0005622 functional_description:"DNA polymerase epsilon subunit 3 (AHRD V1 *-*- B6TCI2_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbC25899701g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|405; (*GB) gi|224123162|ref|XP_002330354.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g007620.1.1 (e_value=6e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1868423-1869691 transcript_region:SL2.40ch11:1868423..1869691- functional_description:"F-box domain containing protein (AHRD V1 ***- B6TYF0_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021099g0012.1 protein AED:0.47 eAED:0.47 QI:78|0.66|0|0.75|1|1|4|0|81; (*ITAG) Solyc10g080150.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60851358-60855907 transcript_region:SL2.40ch10:60851358..60855907- go_terms:GO:0008152,GO:0006694 functional_description:"24-sterol C-methyltransferase (AHRD V1 ***- Q2QDF7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0008152,GO:0006694 NbS00021099g0013.1 protein AED:0.08 eAED:0.12 QI:0|1|0.33|1|0.5|1|3|0|222; (*ITAG) Solyc10g080140.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60847766-60849212 transcript_region:SL2.40ch10:60847766..60849212+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021099g0011.1 protein AED:0.13 eAED:0.13 QI:1468|0.87|0.66|1|1|1|9|0|332; (*GB) gi|83283987|gb|ABC01901.1| (e_value=0.0) 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum];; (*SWP) sp|Q96B26|EXOS8_HUMAN (e_value=2e-50) Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1;; (*TAIR) AT1G60080.1 (e_value=4e-143) | Symbols: | 3'-5'-exoribonuclease family protein | chr1:22152605-22154339 REVERSE LENGTH=302;; (*ITAG) Solyc06g075390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43181968-43189299 transcript_region:SL2.40ch06:43181968..43189299- go_terms:GO:0042802 functional_description:"Exosome complex exonuclease RRP43 (AHRD V1 ***- B4FDY3_MAIZE); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0042802 NbS00012913g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|840; (*GB) gi|225445374|ref|XP_002281645.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FM64|PP431_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1;; (*TAIR) AT5G55740.1 (e_value=0.0) | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:22561941-22564433 REVERSE LENGTH=830;; (*ITAG) Solyc08g013850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3189155-3191674 transcript_region:SL2.40ch08:3189155..3191674- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MKK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00012913g0007.1 protein AED:0.19 eAED:0.23 QI:776|0.63|0.65|1|0.57|0.7|20|0|875; (*GB) gi|296085519|emb|CBI29251.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5W7F2|AGD3_ARATH (e_value=0.0) ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1;; (*TAIR) AT5G13300.1 (e_value=0.0) | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827;; (*ITAG) Solyc05g023750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29237545-29248578 transcript_region:SL2.40ch05:29237545..29248578+ go_terms:GO:0008060,GO:0005515 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--* AGAP3_HUMAN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0008060,GO:0005515 NbS00003565g0001.1 protein AED:0.17 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|140; (*ITAG) Solyc10g086450.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64592299-64592796 transcript_region:SL2.40ch10:64592299..64592796+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003565g0006.1 protein AED:0.57 eAED:0.76 QI:0|0|0|1|0|0|2|0|97 NbS00011628g0014.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|0|0.33|3|0|339; (*GB) gi|225435943|ref|XP_002268943.1| (e_value=1e-97) PREDICTED: F-box/kelch-repeat protein At5g26960-like [Vitis vinifera];; (*SWP) sp|Q6NPN5|FK113_ARATH (e_value=2e-97) F-box/kelch-repeat protein At5g26960 OS=Arabidopsis thaliana GN=At5g26960 PE=2 SV=1;; (*TAIR) AT5G26960.1 (e_value=2e-98) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:9484908-9486149 REVERSE LENGTH=413;; (*ITAG) Solyc11g072080.1.1 (e_value=2e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52442431-52443736 transcript_region:SL2.40ch11:52442431..52443736+ functional_description:"Kelch-like 13 (AHRD V1 *-*- Q66IL9_XENTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00011628g0002.1 protein AED:0.18 eAED:0.18 QI:182|0.83|0.84|1|0.91|0.84|13|317|460; (*GB) gi|224103999|ref|XP_002313277.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54FQ8|EI2BG_DICDI (e_value=1e-38) Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1;; (*TAIR) AT5G19485.1 (e_value=3e-177) | Symbols: | transferases;nucleotidyltransferases | chr5:6573907-6576352 REVERSE LENGTH=456;; (*ITAG) Solyc11g072090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52445313-52451140 transcript_region:SL2.40ch11:52445313..52451140+ go_terms:GO:0016740 functional_description:"Translation initiation factor eIF-2B gamma subunit (AHRD V1 ***- B6TJ84_MAIZE); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0016740 NbS00011628g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|4|0|220; (*GB) gi|224057036|ref|XP_002299115.1| (e_value=1e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43383|ACCH5_ARATH (e_value=3e-24) 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2;; (*TAIR) AT3G13610.1 (e_value=6e-67) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc11g072100.1.1 (e_value=2e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52451744-52453742 transcript_region:SL2.40ch11:52451744..52453742- go_terms:GO:0016491 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00024926g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.90|0.75|1|0.72|0.75|12|240|525; (*GB) gi|359493680|ref|XP_003634649.1| (e_value=0.0) PREDICTED: lactase-phlorizin hydrolase [Vitis vinifera];; (*SWP) sp|Q7XSK2|BGL16_ORYSJ (e_value=0.0) Beta-glucosidase 16 OS=Oryza sativa subsp. japonica GN=BGLU16 PE=2 SV=2;; (*TAIR) AT1G61810.1 (e_value=2e-177) | Symbols: BGLU45 | beta-glucosidase 45 | chr1:22830035-22832813 FORWARD LENGTH=520;; (*ITAG) Solyc07g063390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63085890-63089422 transcript_region:SL2.40ch07:63085890..63089422- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00016957g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|8|425|705; (*GB) gi|225459067|ref|XP_002283768.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248920 [Vitis vinifera];; (*SWP) sp|A5A779|PGTA_PIG (e_value=6e-46) Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1;; (*TAIR) AT4G24490.2 (e_value=0.0) | Symbols: | RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678;; (*ITAG) Solyc04g076430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58916962-58925396 transcript_region:SL2.40ch04:58916962..58925396+ go_terms:GO:0018346 functional_description:"Geranylgeranyl transferase type-2 subunit alpha (AHRD V1 *-*- B5X467_SALSA); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0018346 NbS00016957g0002.1 protein AED:0.07 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|41058336|gb|AAR99160.1| (e_value=2e-23) dsRNA-binding protein [Solanum lycopersicum];; (*ITAG) Solyc04g076420.2.1 (e_value=9e-37) genomic_reference:SL2.40ch04 gene_region:58909755-58914890 transcript_region:SL2.40ch04:58909755..58914890+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUQ1_BRARA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00015844g0005.1 protein AED:0.00 eAED:0.00 QI:131|1|1|1|1|1|2|268|516; (*GB) gi|85068600|gb|ABC69380.1| (e_value=0.0) CYP81C6v2 [Nicotiana tabacum];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=4e-125) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G10600.1 (e_value=1e-148) | Symbols: CYP81K2 | cytochrome P450, family 81, subfamily K, polypeptide 2 | chr5:3351227-3352777 FORWARD LENGTH=516;; (*ITAG) Solyc07g014670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5054129-5056662 transcript_region:SL2.40ch07:5054129..5056662+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00015844g0008.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.33|1|0|0|3|0|236; (*GB) gi|351630237|gb|AEQ55273.1| (e_value=9e-127) expansin [Breonia chinensis];; (*SWP) sp|O80622|EXP15_ARATH (e_value=4e-117) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=3e-118) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc03g115890.2.1 (e_value=3e-125) genomic_reference:SL2.40ch03 gene_region:59540713-59542201 transcript_region:SL2.40ch03:59540713..59542201+ go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005199 NbS00015844g0007.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.66|0|0.33|3|0|155 NbS00038173g0001.1 protein AED:0.33 eAED:0.33 QI:110|1|0.5|1|0|0|2|0|165; (*GB) gi|224117480|ref|XP_002317585.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54850.1 (e_value=2e-19) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22280755-22281363 REVERSE LENGTH=202;; (*ITAG) Solyc10g006360.1.1 (e_value=1e-66) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:989509-990009 transcript_region:SL2.40ch10:989509..990009+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036487g0001.1 protein AED:0.12 eAED:0.12 QI:319|1|1|1|0.66|0.57|7|334|308; (*GB) gi|225427254|ref|XP_002278688.1| (e_value=4e-155) PREDICTED: eyes absent homolog 2 [Vitis vinifera];; (*SWP) sp|O00167|EYA2_HUMAN (e_value=4e-42) Eyes absent homolog 2 OS=Homo sapiens GN=EYA2 PE=1 SV=2;; (*TAIR) AT2G35320.1 (e_value=2e-138) | Symbols: ATEYA, EYA | EYES ABSENT homolog | chr2:14867074-14868387 REVERSE LENGTH=307;; (*ITAG) Solyc08g077090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58184359-58189670 transcript_region:SL2.40ch08:58184359..58189670- go_terms:GO:0030946 functional_description:"Eyes absent homolog 3 (AHRD V1 ***- A0JME1_DANRE); contains Interpro domain(s) IPR006545 EYA "; GO:0030946 NbS00002657g0016.1 protein AED:0.05 eAED:0.05 QI:216|1|1|1|0.85|0.75|8|289|226; (*GB) gi|1370276|emb|CAA65288.1| (e_value=4e-149) MADS-box protein [Nicotiana tabacum];; (*SWP) sp|Q07472|MADS1_PETHY (e_value=2e-130) Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1;; (*TAIR) AT3G54340.1 (e_value=8e-88) | Symbols: AP3, ATAP3 | K-box region and MADS-box transcription factor family protein | chr3:20119428-20121087 REVERSE LENGTH=232;; (*ITAG) Solyc04g081000.2.1 (e_value=1e-137) genomic_reference:SL2.40ch04 gene_region:62653318-62656888 transcript_region:SL2.40ch04:62653318..62656888+ go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- Q8L5F5_DAUCA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0003677 NbS00002657g0006.1 protein AED:0.60 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|126 NbS00002657g0017.1 protein AED:0.37 eAED:0.57 QI:0|0|0|1|0|0|2|0|203; (*ITAG) Solyc02g094810.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49909990-49911531 transcript_region:SL2.40ch02:49909990..49911531- functional_description:"Unknown Protein (AHRD V1)"; NbS00002657g0015.1 protein AED:0.20 eAED:0.80 QI:0|0|0|1|0|0|4|0|149 NbS00008738g0001.1 protein AED:0.07 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|523; (*GB) gi|255587163|ref|XP_002534162.1| (e_value=0.0) acyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LQP8|KCS3_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=3;; (*TAIR) AT1G07720.1 (e_value=0.0) | Symbols: KCS3 | 3-ketoacyl-CoA synthase 3 | chr1:2390970-2392406 REVERSE LENGTH=478;; (*ITAG) Solyc11g072990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53210906-53212306 transcript_region:SL2.40ch11:53210906..53212306- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00018824g0032.1 protein AED:0.09 eAED:0.11 QI:0|0.58|0.46|0.92|0.58|0.61|13|0|894; (*GB) gi|365222858|gb|AEW69781.1| (e_value=0.0) Hop-interacting protein THI006 [Solanum lycopersicum];; (*SWP) sp|Q9LDK9|APBLA_ARATH (e_value=0.0) Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1;; (*TAIR) AT5G11490.1 (e_value=0.0) | Symbols: | adaptin family protein | chr5:3671964-3676144 FORWARD LENGTH=841;; (*ITAG) Solyc08g068210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54522106-54537913 transcript_region:SL2.40ch08:54522106..54537913+ go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit "; GO:0030276 NbS00018824g0033.1 protein AED:0.12 eAED:0.12 QI:83|1|1|1|0.66|0.5|4|195|147; (*GB) gi|359475326|ref|XP_003631656.1| (e_value=2e-85) PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera];; (*SWP) sp|Q87SU3|RL27_VIBPA (e_value=3e-32) 50S ribosomal protein L27 OS=Vibrio parahaemolyticus GN=rpmA PE=3 SV=1;; (*TAIR) AT5G15220.1 (e_value=4e-70) | Symbols: | Ribosomal protein L27 family protein | chr5:4941466-4942133 REVERSE LENGTH=154;; (*ITAG) Solyc08g068220.2.1 (e_value=1e-102) genomic_reference:SL2.40ch08 gene_region:54539601-54540524 transcript_region:SL2.40ch08:54539601..54540524+ go_terms:GO:0005515 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- B6T4C5_MAIZE); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005515 NbS00018824g0024.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.75|0.75|1|1|4|374|99; (*GB) gi|357454945|ref|XP_003597753.1| (e_value=8e-57) Ribosomal protein L37 [Medicago truncatula];; (*SWP) sp|Q8LFH7|RL371_ARATH (e_value=1e-55) 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1;; (*TAIR) AT1G15250.1 (e_value=1e-56) | Symbols: | Zinc-binding ribosomal protein family protein | chr1:5248825-5249381 REVERSE LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=3e-62) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00018824g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.22|0|1|1|1|10|0|591; (*GB) gi|224134963|ref|XP_002327533.1| (e_value=0.0) multidrug resistance protein ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q8LGU1|AB8C_ARATH (e_value=2e-147) ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3;; (*TAIR) AT3G21250.1 (e_value=1e-148) | Symbols: ATMRP6, MRP6, ABCC8 | multidrug resistance-associated protein 6 | chr3:7457668-7463261 REVERSE LENGTH=1453;; (*ITAG) Solyc12g044820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45606312-45611847 transcript_region:SL2.40ch12:45606312..45611847- go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 ***- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00018824g0035.1 protein AED:0.26 eAED:0.26 QI:397|1|0.66|1|0.2|0|6|0|597; (*GB) gi|225430029|ref|XP_002281569.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Vitis vinifera];; (*SWP) sp|Q8GZ63|PP397_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2;; (*TAIR) AT5G25630.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8947426-8949424 FORWARD LENGTH=574;; (*ITAG) Solyc08g068230.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54541283-54546516 transcript_region:SL2.40ch08:54541283..54546516- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4J8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018824g0009.1 protein AED:0.40 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|255572985|ref|XP_002527423.1| (e_value=2e-85) multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q8LGU1|AB8C_ARATH (e_value=6e-71) ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3;; (*TAIR) AT3G21250.2 (e_value=4e-72) | Symbols: MRP6, ABCC8 | multidrug resistance-associated protein 6 | chr3:7457668-7463261 REVERSE LENGTH=1464;; (*ITAG) Solyc12g044820.1.1 (e_value=8e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45606312-45611847 transcript_region:SL2.40ch12:45606312..45611847- go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 ***- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00018824g0019.1 protein AED:0.47 eAED:0.47 QI:0|0.33|0|0.75|1|1|4|0|193; (*GB) gi|224089064|ref|XP_002308620.1| (e_value=1e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|O81004|Y2287_ARATH (e_value=6e-67) GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2;; (*TAIR) AT5G11480.1 (e_value=9e-93) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:3669350-3671471 REVERSE LENGTH=318;; (*ITAG) Solyc08g068200.2.1 (e_value=1e-105) genomic_reference:SL2.40ch08 gene_region:54515177-54519689 transcript_region:SL2.40ch08:54515177..54519689- go_terms:GO:0043022,GO:0003924 functional_description:"GTP binding protein (AHRD V1 **** D7M3R1_ARALY); contains Interpro domain(s) IPR019987 GTP-binding protein, ribosome biogenesis, YsxC "; GO:0043022,GO:0003924 NbS00003665g0003.1 protein AED:0.04 eAED:0.04 QI:112|1|1|1|1|1|2|400|500; (*GB) gi|122239909|sp|Q94FM7.2|C71DK_TOBAC (e_value=0.0) RecName: Full=5-epiaristolochene 1,3-dihydroxylase; Short=NtEAH; AltName: Full=Cytochrome P450 71D20;; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=0.0) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26300.1 (e_value=2e-129) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc04g083140.1.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00032743g0003.1 protein AED:0.15 eAED:0.15 QI:126|0|0|1|0|0.5|2|0|160; (*GB) gi|323149963|gb|ADX33331.1| (e_value=7e-83) R2R3-MYB transcription factor [Petunia x hybrida];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=3e-81) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=5e-73) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc10g055410.1.1 (e_value=2e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52192550-52193521 transcript_region:SL2.40ch10:52192550..52193521- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- B9H191_POPTR); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00049941g0009.1 protein AED:0.20 eAED:0.20 QI:200|0.72|0.58|0.91|0.81|0.75|12|0|496; (*GB) gi|359496386|ref|XP_002267210.2| (e_value=0.0) PREDICTED: geminivirus Rep-interacting motor protein-like, partial [Vitis vinifera];; (*SWP) sp|Q9LX99|GRIMP_ARATH (e_value=0.0) Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1;; (*TAIR) AT5G65460.1 (e_value=0.0) | Symbols: KCA2, KAC2 | kinesin like protein for actin based chloroplast movement 2 | chr5:26161831-26169001 REVERSE LENGTH=1264;; (*ITAG) Solyc11g010560.1.1 (e_value=1e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00049941g0010.1 protein AED:0.22 eAED:0.24 QI:10|0|0.2|1|0.25|0.2|5|0|269; (*GB) gi|297745559|emb|CBI40724.3| (e_value=3e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ULD4|BRPF3_HUMAN (e_value=2e-15) Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2;; (*TAIR) AT1G20670.1 (e_value=8e-63) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc04g082530.2.1 (e_value=4e-108) genomic_reference:SL2.40ch04 gene_region:63767730-63772749 transcript_region:SL2.40ch04:63767730..63772749- functional_description:"Bromodomain-containing protein (AHRD V1 ***- B9R8P3_RICCO); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00049941g0005.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|147 NbS00033051g0006.1 protein AED:0.18 eAED:0.18 QI:368|0.83|0.85|1|0.66|0.28|7|0|735; (*GB) gi|225438426|ref|XP_002276373.1| (e_value=0.0) PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc03g032040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00033051g0002.1 protein AED:0.27 eAED:0.30 QI:0|0|0|1|1|1|2|0|126; (*GB) gi|255575239|ref|XP_002528523.1| (e_value=3e-22) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g082240.1.1 (e_value=4e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:40517470-40517907 transcript_region:SL2.40ch02:40517470..40517907+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028925g0005.1 protein AED:0.09 eAED:0.09 QI:86|0.86|0.87|0.93|0.73|0.75|16|276|2019; (*GB) gi|255542648|ref|XP_002512387.1| (e_value=0.0) DNA polymerase zeta catalytic subunit, putative [Ricinus communis];; (*SWP) sp|Q61493|DPOLZ_MOUSE (e_value=0.0) DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=2 SV=3;; (*TAIR) AT1G67500.1 (e_value=0.0) | Symbols: ATREV3, REV3 | recovery protein 3 | chr1:25287707-25296714 REVERSE LENGTH=1890;; (*ITAG) Solyc01g099220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81275113-81289446 transcript_region:SL2.40ch01:81275113..81289446+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 *-*- B9RF68_RICCO); contains Interpro domain(s) IPR006172 DNA-directed DNA polymerase, family B "; GO:0003676,GO:0006260,GO:0006139 NbS00016745g0007.1 protein AED:0.34 eAED:0.34 QI:188|0.71|0.5|1|0.85|0.75|8|0|205; (*GB) gi|356563326|ref|XP_003549915.1| (e_value=3e-18) PREDICTED: protein CWC15 homolog [Glycine max];; (*TAIR) AT3G13200.1 (e_value=4e-19) | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle control family protein | chr3:4242239-4243976 FORWARD LENGTH=230;; (*ITAG) Solyc10g005800.2.1 (e_value=2e-21) genomic_reference:SL2.40ch10 gene_region:632974-637721 transcript_region:SL2.40ch10:632974..637721- go_terms:GO:0005515,GO:0003723 functional_description:"CWC15 homolog (AHRD V1 ***- B9EL88_SALSA); contains Interpro domain(s) IPR006973 Cwf15/Cwc15 cell cycle control protein "; GO:0005515,GO:0003723 NbS00016745g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.66|1|0.87|1|9|0|698; (*GB) gi|359494218|ref|XP_002267511.2| (e_value=0.0) PREDICTED: ABC transporter G family member 26-like [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=0.0) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=0.0) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64634657-64637204 transcript_region:SL2.40ch07:64634657..64637204+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00016745g0002.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|1|1|2|0|678; (*GB) gi|224061256|ref|XP_002300393.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H330|TM245_HUMAN (e_value=5e-14) Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2;; (*TAIR) AT5G55960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc07g065790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64638598-64641853 transcript_region:SL2.40ch07:64638598..64641853+ functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH); contains Interpro domain(s) IPR002549 Uncharacterised protein family UPF0118 "; NbS00007556g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.71|0.73|0.86|0.35|0.33|15|328|406; (*GB) gi|359489946|ref|XP_002268035.2| (e_value=6e-170) PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera];; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=1e-146) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2;; (*TAIR) AT2G44150.1 (e_value=1e-147) | Symbols: ASHH3, SDG7 | histone-lysine N-methyltransferase ASHH3 | chr2:18258863-18261003 FORWARD LENGTH=363;; (*ITAG) Solyc01g006220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:839826-851722 transcript_region:SL2.40ch01:839826..851722- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- C1G685_PARBD); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00015470g0015.1 protein AED:0.13 eAED:0.14 QI:0|0.87|0.76|1|0.87|0.82|17|0|729; (*GB) gi|225439866|ref|XP_002274736.1| (e_value=0.0) PREDICTED: 125 kDa kinesin-related protein [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-90) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G37420.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00015470g0016.1 protein AED:0.37 eAED:0.43 QI:0|0.5|0|1|1|1|3|0|310; (*GB) gi|225439743|ref|XP_002274395.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100248230 isoform 3 [Vitis vinifera];; (*ITAG) Solyc10g086360.1.1 (e_value=3e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64540964-64542878 transcript_region:SL2.40ch10:64540964..64542878+ functional_description:"BRI1-KD interacting protein 130 (AHRD V1 ***- Q761Y4_ORYSJ)"; NbS00015470g0014.1 protein AED:0.14 eAED:0.14 QI:279|0.71|0.75|0.87|0.57|0.75|8|269|326; (*GB) gi|224090667|ref|XP_002309049.1| (e_value=1e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=3e-107) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT5G02540.1 (e_value=9e-132) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:568609-570720 FORWARD LENGTH=331;; (*ITAG) Solyc10g086390.1.1 (e_value=7e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64549171-64551105 transcript_region:SL2.40ch10:64549171..64551105- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LJU7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00015470g0013.1 protein AED:0.25 eAED:0.25 QI:153|1|1|1|0.71|0.75|8|256|216; (*GB) gi|18447913|dbj|BAB84322.1| (e_value=7e-130) ras-related protein RAB8-1 [Nicotiana tabacum];; (*SWP) sp|O24466|RAE1A_ARATH (e_value=3e-121) Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1;; (*TAIR) AT3G53610.3 (e_value=3e-122) | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 | chr3:19876531-19878264 REVERSE LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=8e-130) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00007832g0008.1 protein AED:0.02 eAED:0.02 QI:216|1|1|1|1|1|2|294|676; (*GB) gi|5545339|dbj|BAA82556.1| (e_value=0.0) lectin-like protein kinase [Populus nigra];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=3e-128) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=2e-129) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc03g031980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8748286-8751285 transcript_region:SL2.40ch03:8748286..8751285- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00007832g0009.1 protein AED:0.27 eAED:0.28 QI:143|0.78|0.8|1|0.5|0.53|15|0|720; (*GB) gi|350539862|ref|NP_001234552.1| (e_value=0.0) auxin response factor 8-1 [Solanum lycopersicum];; (*SWP) sp|Q9FGV1|ARFH_ARATH (e_value=0.0) Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2;; (*TAIR) AT5G37020.2 (e_value=0.0) | Symbols: ARF8 | auxin response factor 8 | chr5:14630151-14633916 FORWARD LENGTH=773;; (*ITAG) Solyc03g031970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8739906-8747501 transcript_region:SL2.40ch03:8739906..8747501+ go_terms:GO:0003700 functional_description:"Auxin response factor 8-1 (AHRD V1 **** E0A8P3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00021000g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.4|0.16|1|0.6|0.5|6|0|189; (*GB) gi|115466988|ref|NP_001057093.1| (e_value=2e-52) Os06g0206000 [Oryza sativa Japonica Group];; (*SWP) sp|Q6INI7|NIT2B_XENLA (e_value=4e-38) Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1;; (*TAIR) AT5G12040.1 (e_value=8e-51) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc06g064880.2.1 (e_value=2e-84) genomic_reference:SL2.40ch06 gene_region:36832717-36835834 transcript_region:SL2.40ch06:36832717..36835834+ go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00015934g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.28|1|0.5|0.57|7|0|612; (*GB) gi|255576310|ref|XP_002529048.1| (e_value=0.0) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=2e-147) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=1e-148) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc07g065260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64315902-64321013 transcript_region:SL2.40ch07:64315902..64321013+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 ***- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00015934g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|548; (*GB) gi|89474472|gb|ABD72963.1| (e_value=0.0) GRAS7 [Solanum lycopersicum];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=0.0) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=0.0) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g065270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64321335-64322951 transcript_region:SL2.40ch07:64321335..64322951- go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00036482g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|355; (*ITAG) Solyc06g008570.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:2465155-2467185 transcript_region:SL2.40ch06:2465155..2467185+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036482g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|97 NbS00036482g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|302398591|gb|ADL36590.1| (e_value=0.0) BHLH domain class transcription factor [Malus x domestica];; (*SWP) sp|O23487|BH003_ARATH (e_value=1e-157) Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1;; (*TAIR) AT4G16430.1 (e_value=1e-158) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:9267599-9269002 FORWARD LENGTH=467;; (*ITAG) Solyc06g083980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45552408-45553841 transcript_region:SL2.40ch06:45552408..45553841- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00008129g0002.1 protein AED:0.33 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|50725024|dbj|BAD32828.1| (e_value=2e-103) hypothetical protein [Lotus japonicus];; (*SWP) sp|Q9LTW0|ALIS1_ARATH (e_value=3e-101) ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1;; (*TAIR) AT3G12740.1 (e_value=2e-102) | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049739-4051561 FORWARD LENGTH=350;; (*ITAG) Solyc05g054800.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63771846-63772898 transcript_region:SL2.40ch05:63771846..63772898- go_terms:GO:0005515 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515 NbS00008129g0016.1 protein AED:0.11 eAED:0.11 QI:93|1|1|1|0.66|0.5|4|606|123; (*GB) gi|350539055|ref|NP_001234116.1| (e_value=7e-77) similar to 60S ribosomal protein L35 [Solanum lycopersicum];; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=1e-75) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=1e-73) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=6e-80) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00008129g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|516; (*GB) gi|255581612|ref|XP_002531610.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G39380.1 (e_value=8e-156) | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70 family protein H2 | chr2:16447096-16449009 REVERSE LENGTH=637;; (*ITAG) Solyc05g054820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63783275-63785212 transcript_region:SL2.40ch05:63783275..63785212+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_CANGA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00008129g0015.1 protein AED:0.41 eAED:0.46 QI:0|0|0|1|0|0|3|0|118; (*GB) gi|357123314|ref|XP_003563356.1| (e_value=2e-35) PREDICTED: ALA-interacting subunit 1-like [Brachypodium distachyon];; (*SWP) sp|Q9LTW0|ALIS1_ARATH (e_value=4e-31) ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1;; (*TAIR) AT3G12740.1 (e_value=3e-32) | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049739-4051561 FORWARD LENGTH=350;; (*ITAG) Solyc05g054800.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63771846-63772898 transcript_region:SL2.40ch05:63771846..63772898- go_terms:GO:0005515 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515 NbS00024877g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.93|1|0.96|0.96|33|0|1712; (*GB) gi|147777785|emb|CAN75734.1| (e_value=0.0) hypothetical protein VITISV_030148 [Vitis vinifera];; (*SWP) sp|Q4VA53|PDS5B_MOUSE (e_value=8e-72) Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1;; (*TAIR) AT5G47690.1 (e_value=0.0) | Symbols: | binding | chr5:19317899-19327014 FORWARD LENGTH=1605;; (*ITAG) Solyc11g012770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5526597-5549066 transcript_region:SL2.40ch11:5526597..5549066+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B (AHRD V1 **-- PDS5B_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00017412g0009.1 protein AED:0.15 eAED:0.15 QI:208|0.72|0.66|1|0.72|0.75|12|309|490; (*GB) gi|297739882|emb|CBI30064.3| (e_value=5e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|P45951|ARP_ARATH (e_value=7e-160) Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2;; (*TAIR) AT2G41460.1 (e_value=5e-161) | Symbols: ARP | apurinic endonuclease-redox protein | chr2:17285731-17288769 FORWARD LENGTH=536;; (*ITAG) Solyc04g016530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7356030-7363750 transcript_region:SL2.40ch04:7356030..7363750- go_terms:GO:0003676,GO:0006281,GO:0005622 functional_description:"Exodeoxyribonuclease III (AHRD V1 *-*- B8DDX5_LISMH); contains Interpro domain(s) IPR000097 AP endonuclease, family 1 "; GO:0003676,GO:0006281,GO:0005622 NbS00017412g0010.1 protein AED:0.27 eAED:0.27 QI:562|0.83|0.85|1|0.5|0.42|7|153|161; (*GB) gi|224137770|ref|XP_002322647.1| (e_value=2e-48) folylpolyglutamate synthase [Populus trichocarpa];; (*SWP) sp|F4J2K2|FPGS2_ARATH (e_value=1e-41) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1;; (*TAIR) AT3G10160.1 (e_value=9e-43) | Symbols: ATDFC, DFC, FPGS2 | DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625;; (*ITAG) Solyc04g016550.2.1 (e_value=2e-41) genomic_reference:SL2.40ch04 gene_region:7371010-7380851 transcript_region:SL2.40ch04:7371010..7380851- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9IHV7_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00004644g0006.1 protein AED:0.08 eAED:0.08 QI:864|1|1|1|0.87|0.66|9|402|698; (*GB) gi|225423802|ref|XP_002277905.1| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT1G26150.1 (e_value=0.0) | Symbols: ATPERK10, PERK10 | proline-rich extensin-like receptor kinase 10 | chr1:9039790-9042873 REVERSE LENGTH=762;; (*ITAG) Solyc04g006930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:618400-625090 transcript_region:SL2.40ch04:618400..625090+ go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00004644g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|276 NbS00031107g0011.1 protein AED:0.07 eAED:0.07 QI:65|0.8|0.83|1|0.2|0.16|6|872|127; (*GB) gi|7331193|gb|AAF60315.1|AF236107_1 (e_value=8e-47) putative purple acid phosphatase precursor [Ipomoea batatas];; (*SWP) sp|Q9SCX8|PPA17_ARATH (e_value=2e-42) Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1;; (*TAIR) AT3G17790.1 (e_value=2e-43) | Symbols: ATACP5, ATPAP17, PAP17 | purple acid phosphatase 17 | chr3:6089779-6090988 FORWARD LENGTH=338;; (*ITAG) Solyc03g098010.2.1 (e_value=2e-63) genomic_reference:SL2.40ch03 gene_region:53809153-53811597 transcript_region:SL2.40ch03:53809153..53811597+ go_terms:GO:0004722 functional_description:"Acid phosphatase (AHRD V1 **** B9XQU4_9BACT); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00031107g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.2|0.16|0.83|0.8|0.83|6|344|416; (*GB) gi|224125720|ref|XP_002329701.1| (e_value=4e-159) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17800.1 (e_value=8e-135) | Symbols: | Protein of unknown function (DUF760) | chr3:6091248-6092873 REVERSE LENGTH=421;; (*ITAG) Solyc03g098000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53805392-53808210 transcript_region:SL2.40ch03:53805392..53808210+ functional_description:"At1g32160/F3C3_6 (AHRD V1 ***- Q9FVR1_ARATH); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00000429g0006.1 protein AED:0.03 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|128 NbS00000429g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|128 NbS00000429g0101.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|169 NbS00024549g0014.1 protein AED:0.08 eAED:0.11 QI:45|0.75|0.4|1|0.5|0.6|5|0|467; (*GB) gi|296088276|emb|CBI36502.3| (e_value=8e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23900.3 (e_value=9e-107) | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:8631941-8635852 REVERSE LENGTH=987;; (*ITAG) Solyc09g092250.2.1 (e_value=2e-164) genomic_reference:SL2.40ch09 gene_region:66735783-66742804 transcript_region:SL2.40ch09:66735783..66742804+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *--- Q9LIR7_ARATH); contains Interpro domain(s) IPR001298 Filamin/ABP280 repeat "; GO:0003676,GO:0008270,GO:0000166 NbS00024549g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|147835475|emb|CAN66130.1| (e_value=3e-162) hypothetical protein VITISV_033611 [Vitis vinifera];; (*ITAG) Solyc09g092210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66700581-66705403 transcript_region:SL2.40ch09:66700581..66705403+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00024549g0012.1 protein AED:0.66 eAED:0.80 QI:3|0|0.14|0.42|0.16|0.28|7|37|137 NbS00024549g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.85|1|1|1|7|0|311; (*GB) gi|225433469|ref|XP_002263496.1| (e_value=7e-112) PREDICTED: magnesium transporter NIPA2 [Vitis vinifera];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=6e-56) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT4G13800.1 (e_value=5e-111) | Symbols: | Protein of unknown function (DUF803) | chr4:8002129-8003858 REVERSE LENGTH=336;; (*ITAG) Solyc09g092220.2.1 (e_value=2e-158) genomic_reference:SL2.40ch09 gene_region:66706228-66710546 transcript_region:SL2.40ch09:66706228..66710546- go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbC23769986g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|65; (*ITAG) Solyc11g010160.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00017917g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|71534113|emb|CAH10191.1| (e_value=2e-140) avirulence-like protein 1 [Festuca arundinacea];; (*SWP) sp|Q9M0L0|DRE1A_ARATH (e_value=5e-70) Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2;; (*TAIR) AT4G25480.1 (e_value=4e-71) | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018353-13019003 REVERSE LENGTH=216;; (*ITAG) Solyc03g026270.1.1 (e_value=9e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8091698-8092315 transcript_region:SL2.40ch03:8091698..8092315+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00027512g0005.1 protein AED:0.16 eAED:0.16 QI:162|1|1|1|0|1|2|311|132; (*GB) gi|225450223|ref|XP_002265835.1| (e_value=4e-74) PREDICTED: thioredoxin-like protein Clot [Vitis vinifera];; (*SWP) sp|Q9FMN4|TCLOT_ARATH (e_value=2e-51) Thioredoxin-like protein Clot OS=Arabidopsis thaliana GN=At5g42850 PE=2 SV=1;; (*TAIR) AT5G42850.2 (e_value=1e-52) | Symbols: | Thioredoxin superfamily protein | chr5:17182072-17182568 REVERSE LENGTH=134;; (*ITAG) Solyc10g037980.1.1 (e_value=3e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:18289502-18294754 transcript_region:SL2.40ch10:18289502..18294754+ go_terms:GO:0005515 functional_description:"Thioredoxin domain-containing protein 17 (AHRD V1 ***- D3PHN2_9MAXI); contains Interpro domain(s) IPR010357 Protein of unknown function DUF953, thioredoxin-like "; GO:0005515 NbS00030533g0007.1 protein AED:0.07 eAED:0.07 QI:189|1|1|1|0.5|1|3|571|328; (*GB) gi|356513783|ref|XP_003525589.1| (e_value=1e-104) PREDICTED: uncharacterized protein LOC100793948 [Glycine max];; (*TAIR) AT5G47090.1 (e_value=4e-100) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19127274-19128493 FORWARD LENGTH=310;; (*ITAG) Solyc06g060990.2.1 (e_value=7e-162) genomic_reference:SL2.40ch06 gene_region:35353274-35358058 transcript_region:SL2.40ch06:35353274..35358058+ functional_description:"AGAP008110-PA (Fragment) (AHRD V1 *-*- Q7Q3Z2_ANOGA); contains Interpro domain(s) IPR018613 Protein of unknown function DUF2052, coiled-coil "; NbS00030533g0011.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.75|0.6|5|333|287; (*GB) gi|225453309|ref|XP_002269020.1| (e_value=3e-148) PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera];; (*SWP) sp|O80507|CSK2E_ARATH (e_value=8e-137) Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1;; (*TAIR) AT2G44680.1 (e_value=6e-138) | Symbols: CKB4 | casein kinase II beta subunit 4 | chr2:18426898-18428166 REVERSE LENGTH=283;; (*ITAG) Solyc06g061000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35359839-35366899 transcript_region:SL2.40ch06:35359839..35366899+ go_terms:GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0019887 NbS00030533g0009.1 protein AED:0.11 eAED:0.10 QI:42|0.5|0.66|1|1|0.66|3|0|79; (*GB) gi|225427377|ref|XP_002282974.1| (e_value=5e-38) PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera];; (*SWP) sp|Q5QM99|RL37A_ORYSJ (e_value=1e-38) 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=6e-39) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=1e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00005815g0008.1 protein AED:0.12 eAED:0.13 QI:275|0.87|0.77|1|0.87|0.77|9|0|854; (*GB) gi|255550522|ref|XP_002516311.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L7V3|PMTQ_ARATH (e_value=0.0) Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1;; (*TAIR) AT5G64030.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829;; (*ITAG) Solyc05g056580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64972779-64977121 transcript_region:SL2.40ch05:64972779..64977121- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbC24354158g0001.1 protein AED:0.07 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|386576410|gb|AFJ12109.1| (e_value=1e-33) cellulose synthase, partial [Nicotiana tabacum];; (*SWP) sp|Q84JA6|CESA4_ARATH (e_value=1e-18) Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1;; (*TAIR) AT5G44030.1 (e_value=8e-20) | Symbols: CESA4, IRX5, NWS2 | cellulose synthase A4 | chr5:17714713-17719564 FORWARD LENGTH=1049;; (*ITAG) Solyc09g072820.2.1 (e_value=3e-34) genomic_reference:SL2.40ch09 gene_region:61011531-61017918 transcript_region:SL2.40ch09:61011531..61017918- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B8XPP6_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00055295g0005.1 protein AED:0.24 eAED:0.24 QI:176|1|1|1|1|1|5|303|112; (*GB) gi|388510578|gb|AFK43355.1| (e_value=4e-74) unknown [Lotus japonicus];; (*SWP) sp|O49884|RL30_LUPLU (e_value=2e-75) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=4e-71) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc01g009100.2.1 (e_value=3e-79) genomic_reference:SL2.40ch01 gene_region:3112345-3115591 transcript_region:SL2.40ch01:3112345..3115591+ go_terms:GO:0003735,GO:0030627 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0003735,GO:0030627 NbS00055295g0008.1 protein AED:0.19 eAED:0.19 QI:151|1|1|1|0.75|0.8|5|447|98; (*GB) gi|351723875|ref|NP_001237294.1| (e_value=7e-61) uncharacterized protein LOC100305829 [Glycine max];; (*SWP) sp|Q5RCP3|NAA38_PONAB (e_value=1e-39) N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo abelii GN=NAA38 PE=3 SV=3;; (*TAIR) AT1G65700.2 (e_value=2e-58) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:24434463-24435870 REVERSE LENGTH=98;; (*ITAG) Solyc06g073700.2.1 (e_value=1e-64) genomic_reference:SL2.40ch06 gene_region:41857907-41860856 transcript_region:SL2.40ch06:41857907..41860856- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein LSM8 (AHRD V1 **-- C5FH47_NANOT); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00029337g0012.1 protein AED:0.09 eAED:0.09 QI:33|1|0.5|1|0.6|0.83|6|384|389; (*GB) gi|147843096|emb|CAN81204.1| (e_value=5e-95) hypothetical protein VITISV_035443 [Vitis vinifera];; (*TAIR) AT3G63300.1 (e_value=1e-85) | Symbols: FKD1 | FORKED 1 | chr3:23385033-23387625 FORWARD LENGTH=498;; (*ITAG) Solyc09g065590.2.1 (e_value=2e-158) genomic_reference:SL2.40ch09 gene_region:59345026-59349449 transcript_region:SL2.40ch09:59345026..59349449+ go_terms:GO:0035091 functional_description:"Os12g0604200 protein (Fragment) (AHRD V1 *-*- Q0IM29_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00029337g0013.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.42|1|0.16|0.57|7|0|340; (*GB) gi|356536292|ref|XP_003536673.1| (e_value=1e-165) PREDICTED: sulfate transporter 3.1-like [Glycine max];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=4e-161) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=3e-162) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc09g065560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59290557-59299087 transcript_region:SL2.40ch09:59290557..59299087- go_terms:GO:0015116 functional_description:"Sulfate transporter (AHRD V1 **** D7LTZ8_ARALY); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015116 NbS00029337g0011.1 protein AED:0.37 eAED:0.37 QI:116|1|0.75|1|1|1|4|0|242; (*GB) gi|61889383|emb|CAI53895.2| (e_value=1e-161) putative receptor associated protein [Capsicum chinense];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=1e-89) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT1G03070.2 (e_value=3e-143) | Symbols: | Bax inhibitor-1 family protein | chr1:730148-731379 FORWARD LENGTH=247;; (*ITAG) Solyc06g084130.2.1 (e_value=3e-147) genomic_reference:SL2.40ch06 gene_region:45643108-45644440 transcript_region:SL2.40ch06:45643108..45644440+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TZF1_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00029337g0111.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|0.66|0|0.66|3|288|383 NbS00029337g0108.1 protein AED:0.22 eAED:0.22 QI:289|0.85|0.75|1|1|1|8|611|323 NbS00025409g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|1|1|3|154|320; (*GB) gi|156118328|gb|ABU49725.1| (e_value=3e-133) WRKY transcription factor 6 [Solanum tuberosum];; (*SWP) sp|Q9LY00|WRK70_ARATH (e_value=8e-42) Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1;; (*TAIR) AT3G56400.1 (e_value=6e-43) | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding protein 70 | chr3:20909082-20910409 REVERSE LENGTH=294;; (*ITAG) Solyc09g015770.2.1 (e_value=5e-134) genomic_reference:SL2.40ch09 gene_region:10987958-10989890 transcript_region:SL2.40ch09:10987958..10989890- go_terms:GO:0003700 functional_description:"WRKY transcription factor 6 (AHRD V1 **** A7UGD3_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00031309g0007.1 protein AED:0.11 eAED:0.11 QI:555|0.85|0.87|1|1|1|8|697|701; (*GB) gi|164374639|gb|ABY52426.1| (e_value=0.0) NN mitogen-activated protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LVL5|WNK4_ARATH (e_value=0.0) Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1;; (*TAIR) AT5G58350.1 (e_value=0.0) | Symbols: WNK4, ZIK2 | with no lysine (K) kinase 4 | chr5:23585505-23587681 FORWARD LENGTH=571;; (*ITAG) Solyc06g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44554015-44559461 transcript_region:SL2.40ch06:44554015..44559461- go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00031309g0006.1 protein AED:0.17 eAED:0.17 QI:246|1|1|1|1|1|4|162|349; (*GB) gi|224120306|ref|XP_002331015.1| (e_value=2e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|D4N502|DIOX3_PAPSO (e_value=1e-73) Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1;; (*TAIR) AT5G20400.1 (e_value=1e-136) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6894871-6896185 FORWARD LENGTH=348;; (*ITAG) Solyc10g076840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59131795-59139979 transcript_region:SL2.40ch10:59131795..59139979- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00051642g0004.1 protein AED:0.20 eAED:0.24 QI:223|0.76|0.64|1|0.53|0.42|14|0|329; (*GB) gi|356523306|ref|XP_003530281.1| (e_value=1e-84) PREDICTED: UPF0420 protein-like [Glycine max];; (*SWP) sp|Q86K80|U420_DICDI (e_value=3e-14) UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1;; (*TAIR) AT5G01510.1 (e_value=1e-71) | Symbols: RUS5 | Protein of unknown function, DUF647 | chr5:201702-205151 FORWARD LENGTH=509;; (*ITAG) Solyc09g005230.2.1 (e_value=1e-108) genomic_reference:SL2.40ch09 gene_region:175107-180103 transcript_region:SL2.40ch09:175107..180103- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00059242g0007.1 protein AED:0.16 eAED:0.16 QI:297|1|1|1|1|1|6|389|253; (*GB) gi|255554739|ref|XP_002518407.1| (e_value=2e-116) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9BTZ2|DHRS4_HUMAN (e_value=3e-55) Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3;; (*TAIR) AT4G05530.1 (e_value=3e-111) | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254;; (*ITAG) Solyc04g014670.2.1 (e_value=5e-130) genomic_reference:SL2.40ch04 gene_region:4934139-4937078 transcript_region:SL2.40ch04:4934139..4937078+ go_terms:GO:0001758 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C0BIG4_9BACT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0001758 NbS00059242g0011.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|490; (*GB) gi|225445328|ref|XP_002281500.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Vitis vinifera];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=6e-179) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT3G24330.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=500;; (*ITAG) Solyc11g012030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4970776-4972913 transcript_region:SL2.40ch11:4970776..4972913- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B4FB19_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00059242g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.6|1|1|1|5|507|607; (*GB) gi|356555714|ref|XP_003546175.1| (e_value=7e-169) PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=3e-107) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=2e-143) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc04g014680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4937457-4942883 transcript_region:SL2.40ch04:4937457..4942883- go_terms:GO:0004221 functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-* B6TDL6_MAIZE)"; GO:0004221 NbS00014531g0001.1 protein AED:0.06 eAED:0.06 QI:49|1|0.85|1|1|1|7|0|507; (*GB) gi|255564707|ref|XP_002523348.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=1e-123) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49210.1 (e_value=3e-174) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18238216-18241161 REVERSE LENGTH=518;; (*ITAG) Solyc01g011430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:9218936-9221367 transcript_region:SL2.40ch01:9218936..9221367- functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- A5UWY0_ROSS1); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00014531g0008.1 protein AED:0.17 eAED:0.17 QI:37|0.33|0.25|1|0.66|0.75|4|0|316; (*GB) gi|225470894|ref|XP_002263137.1| (e_value=2e-70) PREDICTED: O-acyltransferase WSD1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=1e-44) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT1G72110.1 (e_value=2e-59) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr1:27129253-27131354 REVERSE LENGTH=479;; (*ITAG) Solyc01g095960.2.1 (e_value=3e-130) genomic_reference:SL2.40ch01 gene_region:78836094-78838707 transcript_region:SL2.40ch01:78836094..78838707+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- A5UW30_ROSS1); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00022041g0108.1 protein AED:0.30 eAED:0.37 QI:0|0|0|0.33|0.25|0.33|9|0|410 NbS00017513g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.42|1|0.33|0.28|7|192|323; (*GB) gi|225461508|ref|XP_002285119.1| (e_value=1e-146) PREDICTED: uncharacterized protein LOC100264152 isoform 1 [Vitis vinifera];; (*SWP) sp|Q58G01|LHWL3_ARATH (e_value=3e-14) Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1;; (*TAIR) AT5G53900.2 (e_value=1e-118) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr5:21881375-21883133 REVERSE LENGTH=377;; (*ITAG) Solyc07g062950.2.1 (e_value=4e-157) genomic_reference:SL2.40ch07 gene_region:62809477-62812512 transcript_region:SL2.40ch07:62809477..62812512+ functional_description:"BHLH transcription factor (AHRD V1 *-*- Q9XIN0_ARATH)"; NbS00035621g0004.1 protein AED:0.35 eAED:0.35 QI:39|0.2|0|0.33|0.4|0.5|6|0|264; (*GB) gi|255576058|ref|XP_002528924.1| (e_value=4e-61) Chaperone protein dnaJ, putative [Ricinus communis];; (*SWP) sp|Q39079|DNJ13_ARATH (e_value=3e-46) Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2;; (*TAIR) AT2G35720.1 (e_value=2e-47) | Symbols: OWL1 | DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD LENGTH=538;; (*ITAG) Solyc08g078660.2.1 (e_value=3e-75) genomic_reference:SL2.40ch08 gene_region:59591348-59605081 transcript_region:SL2.40ch08:59591348..59605081+ go_terms:GO:0005515 functional_description:"Chaperone protein dnaJ 13 (AHRD V1 ***- B6T7S1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005515 NbS00054075g0005.1 protein AED:0.02 eAED:0.06 QI:0|0.42|0|1|0.71|0.5|8|0|1055; (*GB) gi|225447592|ref|XP_002272218.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Vitis vinifera];; (*SWP) sp|Q54YP4|VPS11_DICDI (e_value=0.0) Vacuolar protein sorting-associated protein 11 homolog OS=Dictyostelium discoideum GN=vps11 PE=3 SV=1;; (*TAIR) AT2G05170.1 (e_value=0.0) | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11 | chr2:1870020-1873278 FORWARD LENGTH=932;; (*ITAG) Solyc06g065170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37022881-37028663 transcript_region:SL2.40ch06:37022881..37028663+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting protein (AHRD V1 ***- C5JFZ3_AJEDS); contains Interpro domain(s) IPR016528 Vacuolar protein sorting-associated protein 11 "; GO:0005515 NbS00033256g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.6|0.8|1|1|5|0|309; (*GB) gi|4097585|gb|AAD09518.1| (e_value=1e-117) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|P54120|AIG1_ARATH (e_value=8e-62) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=8e-80) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc11g028010.1.1 (e_value=9e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00001927g0012.1 protein AED:0.12 eAED:0.12 QI:257|1|1|1|0.90|0.83|12|543|756; (*GB) gi|225436954|ref|XP_002271834.1| (e_value=0.0) PREDICTED: phosphate metabolism protein 7-like [Vitis vinifera];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=1e-33) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT4G02900.1 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785;; (*ITAG) Solyc06g084330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45777999-45781628 transcript_region:SL2.40ch06:45777999..45781628+ go_terms:GO:0016020 functional_description:"Hv711N16.16 (Fragment) (AHRD V1 *--- Q8LLC2_HORVU); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00001927g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|14210079|gb|AAK56924.1|AF368237_1 (e_value=8e-180) circadian clock coupling factor ZGT [Nicotiana tabacum];; (*SWP) sp|Q93ZT5|EDL3_ARATH (e_value=1e-107) EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1;; (*TAIR) AT3G63060.1 (e_value=8e-109) | Symbols: EDL3 | EID1-like 3 | chr3:23300638-23301456 REVERSE LENGTH=272;; (*ITAG) Solyc06g084320.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45776094-45776927 transcript_region:SL2.40ch06:45776094..45776927+ functional_description:"Circadian clock coupling factor ZGT (AHRD V1 ***- Q94FM9_TOBAC)"; NbS00001927g0010.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.4|1|1|5|0|375; (*GB) gi|350404714|ref|XP_003487195.1| (e_value=2e-38) PREDICTED: hypothetical protein LOC100745452 [Bombus impatiens];; (*SWP) sp|O74423|ENT1_SCHPO (e_value=5e-21) Epsin-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ent1 PE=1 SV=1;; (*ITAG) Solyc06g064730.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36731788-36734589 transcript_region:SL2.40ch06:36731788..36734589- functional_description:"Serine rich protein (Fragment) (AHRD V1 *--- Q94563_ENTHI)"; NbS00001927g0013.1 protein AED:0.15 eAED:0.21 QI:19|0|0|1|0|0|2|0|157; (*ITAG) Solyc06g084340.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:45781883-45782967 transcript_region:SL2.40ch06:45781883..45782967- go_terms:GO:0030001 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00006874g0004.1 protein AED:0.46 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|117; (*GB) gi|224087478|ref|XP_002308177.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g011190.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4543217-4543528 transcript_region:SL2.40ch09:4543217..4543528+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029120g0005.1 protein AED:0.30 eAED:0.35 QI:0|0.4|0.16|1|1|1|6|0|502; (*GB) gi|225442557|ref|XP_002284272.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258278 [Vitis vinifera];; (*TAIR) AT3G16200.1 (e_value=0.0) | Symbols: | unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:5491619-5493605 REVERSE LENGTH=456;; (*ITAG) Solyc03g120490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62926123-62930230 transcript_region:SL2.40ch03:62926123..62930230+ functional_description:"Genomic DNA chromosome 3 P1 clone MYA6 (AHRD V1 ***- Q9LU25_ARATH)"; NbS00029120g0008.1 protein AED:0.03 eAED:0.03 QI:163|1|1|1|0.75|0.8|5|571|269; (*GB) gi|365818555|gb|AEX00366.1| (e_value=7e-151) IAA27 [Solanum lycopersicum];; (*SWP) sp|Q9ZSY8|IAA27_ARATH (e_value=7e-93) Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1;; (*TAIR) AT4G29080.1 (e_value=5e-94) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305;; (*ITAG) Solyc03g120500.2.1 (e_value=1e-153) genomic_reference:SL2.40ch03 gene_region:62930712-62932827 transcript_region:SL2.40ch03:62930712..62932827- go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00029120g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|359482912|ref|XP_003632859.1| (e_value=3e-75) PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera];; (*TAIR) AT3G27750.1 (e_value=1e-54) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10284820-10285488 FORWARD LENGTH=222;; (*ITAG) Solyc03g120510.1.1 (e_value=2e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:62942987-62943673 transcript_region:SL2.40ch03:62942987..62943673- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY)"; NbS00004515g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0.33|1|0.5|0.33|3|29|835; (*GB) gi|224104501|ref|XP_002313457.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=0.0) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=0.0) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00004515g0101.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|102 NbS00004515g0209.1 protein AED:0.13 eAED:0.13 QI:829|0.9|0.90|1|0.6|0.63|11|284|876 NbS00004515g0207.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.25|1|1|4|0|212 NbS00011337g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.64|0.61|1|0.94|0.88|18|237|984; (*GB) gi|255562580|ref|XP_002522296.1| (e_value=0.0) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q9SYM4|TPS1_ARATH (e_value=0.0) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1;; (*TAIR) AT1G78580.1 (e_value=0.0) | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552495-29557482 REVERSE LENGTH=942;; (*ITAG) Solyc02g071590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35565304-35582603 transcript_region:SL2.40ch02:35565304..35582603- go_terms:GO:0003825 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR012766 Alpha,alpha-trehalose-phosphate synthase "; GO:0003825 NbS00012978g0002.1 protein AED:0.11 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|150 NbS00012978g0004.1 protein AED:0.18 eAED:0.25 QI:40|0|0|1|0|0|2|0|101; (*ITAG) Solyc07g015850.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00021195g0008.1 protein AED:0.33 eAED:0.49 QI:0|0.75|0.66|1|0.5|0.66|9|278|483; (*GB) gi|225463924|ref|XP_002267287.1| (e_value=9e-167) PREDICTED: tyrosine-protein phosphatase non-receptor type 20-like [Vitis vinifera];; (*SWP) sp|O82656|PTP1_ARATH (e_value=2e-146) Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1;; (*TAIR) AT1G71860.3 (e_value=1e-147) | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase 1 | chr1:27026866-27028675 FORWARD LENGTH=340;; (*ITAG) Solyc11g016990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7660095-7671231 transcript_region:SL2.40ch11:7660095..7671231+ go_terms:GO:0016311,GO:0006470 functional_description:"Receptor-type tyrosine-protein phosphatase S (AHRD V1 ***- B6TAK5_MAIZE); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0016311,GO:0006470 NbS00037410g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.4|1|0.75|0.8|5|23|112; (*GB) gi|75241294|sp|Q84LG0.1|5EAS4_NICAT (e_value=9e-56) RecName: Full=Probable 5-epi-aristolochene synthase 4;; (*SWP) sp|Q84LG0|5EAS4_NICAT (e_value=3e-57) Probable 5-epi-aristolochene synthase 4 OS=Nicotiana attenuata PE=2 SV=1;; (*TAIR) AT3G14490.1 (e_value=2e-22) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4863631-4865949 REVERSE LENGTH=601;; (*ITAG) Solyc01g101210.2.1 (e_value=6e-50) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00029460g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.7|1|1|1|10|0|901; (*GB) gi|296083403|emb|CBI23358.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84W55|IP5P4_ARATH (e_value=0.0) Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 OS=Arabidopsis thaliana GN=FRA3 PE=1 SV=2;; (*TAIR) AT1G65580.1 (e_value=0.0) | Symbols: FRA3 | Endonuclease/exonuclease/phosphatase family protein | chr1:24377598-24383940 REVERSE LENGTH=1101;; (*ITAG) Solyc11g008800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2978131-2987532 transcript_region:SL2.40ch11:2978131..2987532- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00011979g0006.1 protein AED:0.13 eAED:0.13 QI:132|1|1|1|1|1|5|469|128; (*GB) gi|388513781|gb|AFK44952.1| (e_value=2e-73) unknown [Medicago truncatula];; (*SWP) sp|Q5XH16|NH2L1_XENLA (e_value=2e-62) NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1;; (*TAIR) AT4G22380.1 (e_value=3e-72) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:11812041-11812922 REVERSE LENGTH=128;; (*ITAG) Solyc09g092080.2.1 (e_value=2e-77) genomic_reference:SL2.40ch09 gene_region:66580614-66583077 transcript_region:SL2.40ch09:66580614..66583077+ go_terms:GO:0005515,GO:0030515 functional_description:"50S ribosomal protein L7Ae (AHRD V1 **-- B2WJB2_PYRTR); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0005515,GO:0030515 NbS00057234g0002.1 protein AED:0.08 eAED:0.13 QI:45|0|0.5|1|0|0.5|2|144|189; (*GB) gi|297737444|emb|CBI26645.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G04630.1 (e_value=8e-30) | Symbols: | Protein of unknown function, DUF584 | chr4:2332163-2332669 REVERSE LENGTH=168;; (*ITAG) Solyc07g064650.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63932607-63933143 transcript_region:SL2.40ch07:63932607..63933143+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00018043g0007.1 protein AED:0.09 eAED:0.10 QI:17|0.2|0.33|0.83|0.2|0.16|6|173|567; (*GB) gi|147866067|emb|CAN80966.1| (e_value=0.0) hypothetical protein VITISV_005610 [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-163) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=3e-179) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc09g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:602117-604953 transcript_region:SL2.40ch09:602117..604953+ go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00018043g0008.1 protein AED:0.29 eAED:0.30 QI:0|0.9|0.81|1|1|1|11|184|464; (*GB) gi|359486438|ref|XP_002275939.2| (e_value=3e-80) PREDICTED: uncharacterized protein LOC100244989 [Vitis vinifera];; (*TAIR) AT5G13560.1 (e_value=6e-70) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | chr5:4361579-4366318 REVERSE LENGTH=679;; (*ITAG) Solyc09g005890.2.1 (e_value=3e-164) genomic_reference:SL2.40ch09 gene_region:618258-619882 transcript_region:SL2.40ch09:618258..619882- functional_description:"Unknown Protein (AHRD V1)"; NbS00018043g0010.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|333; (*GB) gi|147866068|emb|CAN80967.1| (e_value=3e-65) hypothetical protein VITISV_005611 [Vitis vinifera];; (*SWP) sp|Q9ZUS8|MAKR3_ARATH (e_value=2e-26) Probable membrane-associated kinase regulator 3 OS=Arabidopsis thaliana GN=MAKR3 PE=2 SV=1;; (*TAIR) AT2G37380.1 (e_value=2e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39370.1); Has 1284 Blast hits to 422 proteins in 114 species: Archae - 0; Bacteria - 90; Metazoa - 125; Fungi - 151; Plants - 136; Viruses - 0; Other Eukaryotes - 782 (source: NCBI BLink). | chr2:15686828-15687793 FORWARD LENGTH=321;; (*ITAG) Solyc09g005880.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:612326-613684 transcript_region:SL2.40ch09:612326..613684- functional_description:"Unknown Protein (AHRD V1)"; NbS00036780g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|255556001|ref|XP_002519035.1| (e_value=8e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G04920.2 (e_value=4e-14) | Symbols: SFR6 | sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1267;; (*ITAG) Solyc02g078520.2.1 (e_value=1e-27) genomic_reference:SL2.40ch02 gene_region:37750390-37767841 transcript_region:SL2.40ch02:37750390..37767841- functional_description:"Unknown Protein (AHRD V1)"; NbS00026604g0006.1 protein AED:0.04 eAED:0.04 QI:515|1|1|1|0.85|1|8|316|452; (*GB) gi|225446219|ref|XP_002263443.1| (e_value=0.0) PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82730|MGDG2_ARATH (e_value=0.0) Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=MGD2 PE=1 SV=1;; (*TAIR) AT5G20410.1 (e_value=0.0) | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol synthase 2 | chr5:6896765-6898581 FORWARD LENGTH=468;; (*ITAG) Solyc12g009820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3016425-3020241 transcript_region:SL2.40ch12:3016425..3020241- go_terms:GO:0009247,GO:0030259 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-- C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0009247,GO:0030259 NbS00026604g0005.1 protein AED:0.19 eAED:0.28 QI:0|0.25|0.2|1|0.25|0.4|5|0|309; (*GB) gi|224120334|ref|XP_002331022.1| (e_value=3e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=3e-93) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1;; (*TAIR) AT5G34850.1 (e_value=2e-94) | Symbols: ATPAP26, PAP26 | purple acid phosphatase 26 | chr5:13108475-13111217 REVERSE LENGTH=475;; (*ITAG) Solyc12g009800.1.1 (e_value=7e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3005117-3008886 transcript_region:SL2.40ch12:3005117..3008886- go_terms:GO:0016787,GO:0046872 functional_description:"Purple acid phosphatase 3 (AHRD V1 ***- Q6J5M8_SOLTU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0016787,GO:0046872 NbS00031755g0012.1 protein AED:0.07 eAED:0.07 QI:186|0.71|0.62|1|0.28|0.5|8|1088|632; (*GB) gi|359496284|ref|XP_002271910.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242526 [Vitis vinifera];; (*TAIR) AT1G70630.1 (e_value=1e-146) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:26632118-26633991 FORWARD LENGTH=537;; (*ITAG) Solyc05g013500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6718426-6723728 transcript_region:SL2.40ch05:6718426..6723728+ go_terms:GO:0005783 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTF3_SELML); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00031755g0013.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|1|1|3|0|434; (*GB) gi|47571341|gb|AAT35816.1| (e_value=0.0) chloroplast phosphate transporter precursor [Solanum tuberosum];; (*SWP) sp|Q38954|PHT21_ARATH (e_value=0.0) Inorganic phosphate transporter 2-1, chloroplastic OS=Arabidopsis thaliana GN=PHT2-1 PE=1 SV=1;; (*TAIR) AT3G26570.2 (e_value=0.0) | Symbols: PHT2;1, ORF02 | phosphate transporter 2;1 | chr3:9756416-9758413 FORWARD LENGTH=587;; (*ITAG) Solyc05g013510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6724684-6728136 transcript_region:SL2.40ch05:6724684..6728136- go_terms:GO:0016020 functional_description:"Phosphate transporter 2-1 (AHRD V1 ***- Q7YME0_WHEAT); contains Interpro domain(s) IPR001204 Phosphate transporter "; GO:0016020 NbS00031755g0004.1 protein AED:0.42 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|47571341|gb|AAT35816.1| (e_value=7e-89) chloroplast phosphate transporter precursor [Solanum tuberosum];; (*SWP) sp|Q38954|PHT21_ARATH (e_value=3e-39) Inorganic phosphate transporter 2-1, chloroplastic OS=Arabidopsis thaliana GN=PHT2-1 PE=1 SV=1;; (*TAIR) AT3G26570.2 (e_value=2e-40) | Symbols: PHT2;1, ORF02 | phosphate transporter 2;1 | chr3:9756416-9758413 FORWARD LENGTH=587;; (*ITAG) Solyc05g013510.2.1 (e_value=1e-91) genomic_reference:SL2.40ch05 gene_region:6724684-6728136 transcript_region:SL2.40ch05:6724684..6728136- go_terms:GO:0016020 functional_description:"Phosphate transporter 2-1 (AHRD V1 ***- Q7YME0_WHEAT); contains Interpro domain(s) IPR001204 Phosphate transporter "; GO:0016020 NbS00000815g0015.1 protein AED:0.07 eAED:0.07 QI:0|0|0.33|1|0|0|3|333|1168; (*GB) gi|48057662|gb|AAT39961.1| (e_value=5e-177) Putative late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=4e-170) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46710.1 (e_value=4e-50) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17206489-17209032 REVERSE LENGTH=847;; (*ITAG) Solyc04g007490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00000815g0007.1 protein AED:0.47 eAED:0.47 QI:2|0|0|0.5|1|0.5|2|0|96 NbS00000815g0018.1 protein AED:0.63 eAED:0.72 QI:0|0|0|0.75|0|0.25|4|0|306; (*GB) gi|225735332|gb|ACO25630.1| (e_value=1e-18) NBS-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=7e-14) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*ITAG) Solyc05g007170.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00000815g0020.1 protein AED:0.33 eAED:0.36 QI:0|0.25|0|1|0.75|0.8|5|0|428; (*GB) gi|255541214|ref|XP_002511671.1| (e_value=2e-121) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60680.1 (e_value=8e-78) | Symbols: | Plant protein of unknown function (DUF641) | chr3:22430246-22431745 FORWARD LENGTH=499;; (*ITAG) Solyc05g050930.1.1 (e_value=7e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60306634-60308052 transcript_region:SL2.40ch05:60306634..60308052+ functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAQ7_GOSRA); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00000815g0017.1 protein AED:0.15 eAED:0.31 QI:0|0|0|1|0|0|6|0|467; (*GB) gi|142942427|gb|ABO93001.1| (e_value=4e-74) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=4e-71) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=1e-23) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc04g007490.2.1 (e_value=2e-134) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00014631g0010.1 protein AED:0.00 eAED:0.00 QI:74|1|0.83|1|0.8|0.66|6|1356|133; (*GB) gi|445612|prf||1909359A (e_value=1e-82) ribosomal protein S19;; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=6e-80) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=4e-81) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=3e-86) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00014631g0009.1 protein AED:0.19 eAED:0.19 QI:47|0.75|0.76|1|0.58|0.84|13|574|554; (*GB) gi|296085205|emb|CBI28700.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SY03|FB219_ARATH (e_value=2e-65) F-box protein At4g02760 OS=Arabidopsis thaliana GN=At4g02760 PE=2 SV=2;; (*TAIR) AT4G02760.2 (e_value=1e-66) | Symbols: | RNI-like superfamily protein | chr4:1224336-1227857 REVERSE LENGTH=506; NbS00061514g0003.1 protein AED:0.14 eAED:0.14 QI:76|0.5|0.8|0.8|0.25|0.2|5|325|461; (*GB) gi|297834964|ref|XP_002885364.1| (e_value=0.0) extracellular ligand-gated ion channel [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G20300.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc07g064900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64102233-64106112 transcript_region:SL2.40ch07:64102233..64106112+ functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00010489g0023.1 protein AED:0.14 eAED:0.15 QI:0|0.55|0.52|0.90|0.65|0.61|21|309|1816; (*GB) gi|138996985|dbj|BAF52855.1| (e_value=0.0) repressor of silencing 1 [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=0.0) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT2G36490.1 (e_value=0.0) | Symbols: DML1, ROS1 | demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393;; (*ITAG) Solyc09g009080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2409822-2419196 transcript_region:SL2.40ch09:2409822..2419196+ go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 1 (AHRD V1 **-- A4PF88_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00010489g0029.1 protein AED:0.24 eAED:0.24 QI:229|0.86|0.81|1|0.73|0.62|16|408|796; (*GB) gi|350535513|ref|NP_001234454.1| (e_value=0.0) CTR1-like protein kinase [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=0.0) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=0.0) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc09g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2427384-2442527 transcript_region:SL2.40ch09:2427384..2442527+ go_terms:GO:0005515,GO:0004709 functional_description:"Protein kinase (AHRD V1 *-** Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004709 NbS00010489g0032.1 protein AED:0.12 eAED:0.19 QI:0|0|0|0.6|0.5|0.6|5|0|570; (*GB) gi|8347238|gb|AAF74563.1|AF208544_1 (e_value=0.0) heat stress transcription factor A3 [Solanum peruvianum];; (*SWP) sp|Q8GYY1|HSFA3_ARATH (e_value=2e-91) Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2;; (*TAIR) AT5G03720.1 (e_value=1e-92) | Symbols: AT-HSFA3, HSFA3 | heat shock transcription factor A3 | chr5:971913-973683 REVERSE LENGTH=412;; (*ITAG) Solyc09g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2445341-2448016 transcript_region:SL2.40ch09:2445341..2448016- go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 ***- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00010489g0031.1 protein AED:0.17 eAED:0.46 QI:0|0|0.5|1|1|1|2|289|80 NbS00010489g0030.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|0|0|5|0|175; (*GB) gi|89280627|ref|YP_514844.1| (e_value=4e-41) RNA polymerase beta subunit [Solanum lycopersicum];; (*SWP) sp|Q2MIA8|RPOB_SOLLC (e_value=1e-42) DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=2e-41) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g035930.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29069392-29070197 transcript_region:SL2.40ch12:29069392..29070197- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- C0LE66_9ROSI); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00057389g0003.1 protein AED:0.15 eAED:0.15 QI:111|0.83|0.85|1|0.16|0.57|7|0|266; (*GB) gi|255565447|ref|XP_002523714.1| (e_value=4e-59) Shugoshin-1, putative [Ricinus communis];; (*TAIR) AT5G04320.2 (e_value=3e-15) | Symbols: | Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470;; (*ITAG) Solyc11g066350.1.1 (e_value=6e-145) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49177469-49180697 transcript_region:SL2.40ch11:49177469..49180697+ functional_description:"Shugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)"; NbS00004823g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0.33|1|0|0|3|0|217; (*GB) gi|147826987|emb|CAN77779.1| (e_value=1e-107) hypothetical protein VITISV_004172 [Vitis vinifera];; (*TAIR) AT2G12646.1 (e_value=2e-92) | Symbols: | PLATZ transcription factor family protein | chr2:5167179-5169022 REVERSE LENGTH=256;; (*ITAG) Solyc12g010470.1.1 (e_value=7e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3487139-3488997 transcript_region:SL2.40ch12:3487139..3488997+ functional_description:"Zinc-binding protein (AHRD V1 **-- Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00004823g0008.1 protein AED:0.05 eAED:0.05 QI:216|1|1|1|0.33|0.25|4|762|170; (*GB) gi|225445767|ref|XP_002274323.1| (e_value=7e-30) PREDICTED: progestin and adipoq receptor-like protein 1-like [Vitis vinifera];; (*TAIR) AT4G30850.2 (e_value=3e-25) | Symbols: HHP2 | heptahelical transmembrane protein2 | chr4:15020540-15022278 REVERSE LENGTH=358;; (*ITAG) Solyc12g010480.1.1 (e_value=2e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3490185-3494072 transcript_region:SL2.40ch12:3490185..3494072- go_terms:GO:0016021 functional_description:"Adiponectin receptor (AHRD V1 ***- Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0016021 NbS00001493g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|524; (*GB) gi|310877800|gb|ADP37131.1| (e_value=0.0) putative hexose transporter [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00001493g0016.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.28|1|0.83|0.85|7|0|574; (*GB) gi|297739370|emb|CBI29360.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05196|PABP5_ARATH (e_value=0.0) Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3;; (*TAIR) AT1G71770.2 (e_value=0.0) | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682;; (*ITAG) Solyc00g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8760796-8764776 transcript_region:SL2.40ch00:8760796..8764776+ go_terms:GO:0008143,GO:0003743 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **** B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143,GO:0003743 NbS00001493g0004.1 protein AED:0.32 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|163; (*ITAG) Solyc12g009910.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3077787-3079182 transcript_region:SL2.40ch12:3077787..3079182+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001493g0022.1 protein AED:0.29 eAED:0.29 QI:54|0.5|0.2|0.8|0.5|0.6|5|211|232; (*GB) gi|15217572|ref|NP_177321.1| (e_value=1e-27) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G71760.1 (e_value=3e-30) | Symbols: | unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr1:26989414-26990499 FORWARD LENGTH=259;; (*ITAG) Solyc00g009050.1.1 (e_value=8e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:8766371-8768154 transcript_region:SL2.40ch00:8766371..8768154- functional_description:"UPF0544 protein C5orf45 (AHRD V1 ***- CE045_HUMAN)"; NbS00001493g0020.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|199; (*GB) gi|342306012|dbj|BAK55742.1| (e_value=2e-53) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=7e-55) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34135.1 (e_value=6e-33) | Symbols: UGT73B2 | UDP-glucosyltransferase 73B2 | chr4:16345476-16347016 REVERSE LENGTH=483;; (*ITAG) Solyc12g009940.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3100447-3101829 transcript_region:SL2.40ch12:3100447..3101829- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 *-*- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001493g0021.1 protein AED:0.50 eAED:0.84 QI:0|0|0|0.5|0|0|2|0|96 NbS00004122g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.81|0.91|1|1|1|12|27|1403; (*GB) gi|225428013|ref|XP_002278408.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=0.0) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc01g111530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89516519-89527791 transcript_region:SL2.40ch01:89516519..89527791+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00045335g0003.1 protein AED:0.01 eAED:0.02 QI:0|0.66|0.25|1|0.66|0.5|4|0|568; (*GB) gi|359484991|ref|XP_002270183.2| (e_value=0.0) PREDICTED: sodium transporter HKT1-like [Vitis vinifera];; (*SWP) sp|Q84TI7|HKT1_ARATH (e_value=7e-138) Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1;; (*TAIR) AT4G10310.1 (e_value=5e-139) | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6392008-6395667 FORWARD LENGTH=506;; (*ITAG) Solyc07g014690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5103988-5106992 transcript_region:SL2.40ch07:5103988..5106992+ go_terms:GO:0015081 functional_description:"Potassium transporter (AHRD V1 **** A0MNZ1_THEHA); contains Interpro domain(s) IPR003445 Cation transporter "; GO:0015081 NbS00026992g0027.1 protein AED:0.07 eAED:0.07 QI:25|1|1|1|0.85|0.75|8|157|769; (*GB) gi|359483572|ref|XP_002269555.2| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-169) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G45650.1 (e_value=0.0) | Symbols: | subtilase family protein | chr5:18513520-18518790 REVERSE LENGTH=791;; (*ITAG) Solyc02g071560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35543958-35547076 transcript_region:SL2.40ch02:35543958..35547076- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9FK77_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00026992g0026.1 protein AED:0.10 eAED:0.10 QI:230|1|0.88|1|1|1|9|252|812; (*GB) gi|224116492|ref|XP_002317314.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G45650.1 (e_value=0.0) | Symbols: | subtilase family protein | chr5:18513520-18518790 REVERSE LENGTH=791;; (*ITAG) Solyc02g071580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35553819-35559281 transcript_region:SL2.40ch02:35553819..35559281- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9FK77_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00026992g0012.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|297826899|ref|XP_002881332.1| (e_value=4e-26) hypothetical protein ARALYDRAFT_482377 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G34340.1 (e_value=2e-26) | Symbols: | Protein of unknown function, DUF584 | chr2:14489032-14489442 REVERSE LENGTH=136;; (*ITAG) Solyc03g005890.1.1 (e_value=3e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:603677-604093 transcript_region:SL2.40ch03:603677..604093- functional_description:"Genomic DNA chromosome 5 P1 clone MRA19 (AHRD V1 **-- Q9FK78_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00026992g0035.1 protein AED:0.04 eAED:0.05 QI:0|0.33|0.25|1|0.33|0.25|4|123|499; (*GB) gi|224136021|ref|XP_002327361.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=4e-134) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=2e-144) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc06g065420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37226395-37227972 transcript_region:SL2.40ch06:37226395..37227972- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00026992g0028.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.83|1|0.8|0.83|6|481|262; (*GB) gi|297740592|emb|CBI30774.3| (e_value=4e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2V3H0|PP322_ARATH (e_value=5e-102) Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2;; (*TAIR) AT4G18975.4 (e_value=4e-103) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10392170-10393665 REVERSE LENGTH=287;; (*ITAG) Solyc02g071570.2.1 (e_value=3e-147) genomic_reference:SL2.40ch02 gene_region:35551175-35554132 transcript_region:SL2.40ch02:35551175..35554132+ functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 ***- PP332_ARATH)"; NbS00026992g0034.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.66|1|0.5|0.33|3|74|269; (*GB) gi|225460303|ref|XP_002279623.1| (e_value=2e-112) PREDICTED: cytochrome P450 716B2 [Vitis vinifera];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=7e-85) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=3e-81) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc06g065420.1.1 (e_value=2e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37226395-37227972 transcript_region:SL2.40ch06:37226395..37227972- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00026992g0013.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.4|1|1|5|0|960; (*GB) gi|359493285|ref|XP_003634559.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LVD3|PP434_ARATH (e_value=3e-159) Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2 SV=2;; (*TAIR) AT5G57250.1 (e_value=2e-160) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:23195609-23198524 REVERSE LENGTH=971;; (*ITAG) Solyc05g013400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6470860-6474651 transcript_region:SL2.40ch05:6470860..6474651- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MDP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00026992g0006.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|224136021|ref|XP_002327361.1| (e_value=2e-36) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=1e-21) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36140.1 (e_value=6e-32) | Symbols: CYP716A2 | cytochrome P450, family 716, subfamily A, polypeptide 2 | chr5:14212212-14213259 REVERSE LENGTH=318;; (*ITAG) Solyc06g065420.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37226395-37227972 transcript_region:SL2.40ch06:37226395..37227972- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00026992g0018.1 protein AED:0.50 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|128; (*ITAG) Solyc05g013400.2.1 (e_value=4e-27) genomic_reference:SL2.40ch05 gene_region:6470860-6474651 transcript_region:SL2.40ch05:6470860..6474651- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MDP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00054545g0005.1 protein AED:0.31 eAED:0.28 QI:0|0.83|0.57|1|0.66|0.57|7|375|484; (*GB) gi|255574191|ref|XP_002528011.1| (e_value=1e-162) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZQ34|Y2433_ARATH (e_value=6e-123) Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1;; (*TAIR) AT4G31080.1 (e_value=8e-136) | Symbols: | Protein of unknown function (DUF2296) | chr4:15121186-15123072 FORWARD LENGTH=409;; (*ITAG) Solyc04g064810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55094838-55101701 transcript_region:SL2.40ch04:55094838..55101701+ functional_description:"Lunapark b (AHRD V1 ***- A8DT12_HAPBU); contains Interpro domain(s) IPR019273 Protein of unknown function DUF2296 "; NbS00004719g0009.1 protein AED:0.18 eAED:0.21 QI:0|0.75|0.2|1|0.75|0.6|5|0|415; (*GB) gi|225438720|ref|XP_002282548.1| (e_value=1e-106) PREDICTED: uncharacterized protein LOC100252502 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=3e-58) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc02g064990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30696736-30699056 transcript_region:SL2.40ch02:30696736..30699056- functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00004719g0008.1 protein AED:0.13 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|150; (*GB) gi|224145081|ref|XP_002325520.1| (e_value=4e-25) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LQ28|ERF22_ARATH (e_value=6e-15) Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1;; (*TAIR) AT1G33760.1 (e_value=5e-16) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:12237944-12238498 FORWARD LENGTH=184;; (*ITAG) Solyc11g042580.1.1 (e_value=1e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:32576083-32576574 transcript_region:SL2.40ch11:32576083..32576574+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00004719g0011.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|297741337|emb|CBI32468.3| (e_value=6e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G49510.1 (e_value=2e-12) | Symbols: emb1273 | embryo defective 1273 | chr1:18327026-18328147 FORWARD LENGTH=240;; (*ITAG) Solyc01g108650.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:87646065-87649124 transcript_region:SL2.40ch01:87646065..87649124- functional_description:"Unknown Protein (AHRD V1)"; NbS00021190g0007.1 protein AED:0.17 eAED:0.17 QI:83|0.7|0.72|1|0.7|0.81|11|0|584; (*GB) gi|225429870|ref|XP_002283440.1| (e_value=0.0) PREDICTED: aspartyl-tRNA synthetase, cytoplasmic [Vitis vinifera];; (*SWP) sp|Q922B2|SYDC_MOUSE (e_value=3e-156) Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=2;; (*TAIR) AT4G31180.2 (e_value=0.0) | Symbols: | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558;; (*ITAG) Solyc05g056250.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64748883-64755406 transcript_region:SL2.40ch05:64748883..64755406- go_terms:GO:0004815,GO:0042802 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** SYN_PYRHO); contains Interpro domain(s) IPR004523 Aspartyl-tRNA synthetase, class IIb, archea/euk type "; GO:0004815,GO:0042802 NbS00021190g0005.1 protein AED:0.20 eAED:0.37 QI:406|0|0.5|1|0|0.5|2|0|215 NbS00019305g0005.1 protein AED:0.33 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|326; (*ITAG) Solyc05g008440.1.1 (e_value=1e-13) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:2797431-2798420 transcript_region:SL2.40ch05:2797431..2798420+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019305g0023.1 protein AED:0.36 eAED:0.40 QI:97|0.85|0.87|1|1|1|8|0|283; (*GB) gi|255582893|ref|XP_002532218.1| (e_value=2e-120) Tetratricopeptide repeat protein, putative [Ricinus communis];; (*SWP) sp|Q5BK48|TTC5_RAT (e_value=5e-37) Tetratricopeptide repeat protein 5 OS=Rattus norvegicus GN=Ttc5 PE=2 SV=1;; (*ITAG) Solyc05g008420.2.1 (e_value=9e-150) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00019305g0024.1 protein AED:0.45 eAED:0.50 QI:0|1|0.5|1|1|1|4|0|116; (*GB) gi|359472891|ref|XP_002280284.2| (e_value=2e-49) PREDICTED: tetratricopeptide repeat protein 5 isoform 1 [Vitis vinifera];; (*ITAG) Solyc05g008420.2.1 (e_value=2e-59) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00019305g0011.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.25|1|1|4|0|146; (*GB) gi|224108375|ref|XP_002314826.1| (e_value=6e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=7e-29) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT1G15170.1 (e_value=1e-37) | Symbols: | MATE efflux family protein | chr1:5220690-5222756 FORWARD LENGTH=481;; (*ITAG) Solyc05g008510.2.1 (e_value=9e-65) genomic_reference:SL2.40ch05 gene_region:2849561-2853572 transcript_region:SL2.40ch05:2849561..2853572+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00019305g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.55|1|1|1|9|480|706; (*GB) gi|46389755|dbj|BAD15108.1| (e_value=0.0) ALG2-interacting protein X [Nicotiana tabacum];; (*SWP) sp|Q8T7K0|ALIX_DICDI (e_value=3e-53) ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1;; (*TAIR) AT1G15130.1 (e_value=0.0) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:5206217-5209848 REVERSE LENGTH=846;; (*ITAG) Solyc05g008430.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2784339-2792207 transcript_region:SL2.40ch05:2784339..2792207- functional_description:"pH-response regulator protein palA/RIM20 (AHRD V1 **-- C5FER8_NANOT); contains Interpro domain(s) IPR004328 BRO1 "; NbS00019305g0027.1 protein AED:0.37 eAED:0.37 QI:0|1|0.88|1|1|1|9|0|556; (*GB) gi|3676296|gb|AAD03392.1| (e_value=0.0) mitochondrial ATPase beta subunit [Nicotiana sylvestris];; (*SWP) sp|P17614|ATPBM_NICPL (e_value=0.0) ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1;; (*TAIR) AT5G08680.1 (e_value=0.0) | Symbols: | ATP synthase alpha/beta family protein | chr5:2821992-2824683 FORWARD LENGTH=559;; (*ITAG) Solyc05g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2805741-2809779 transcript_region:SL2.40ch05:2805741..2809779- go_terms:GO:0005507 functional_description:"ATP synthase subunit beta (AHRD V1 ***- O82722_NICSY); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0005507 NbS00019305g0029.1 protein AED:0.38 eAED:0.38 QI:234|1|1|1|0.75|0.8|5|468|307; (*GB) gi|224111562|ref|XP_002315901.1| (e_value=2e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|P43394|K502_ACTDE (e_value=4e-87) Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1;; (*TAIR) AT1G15140.1 (e_value=1e-125) | Symbols: | FAD/NAD(P)-binding oxidoreductase | chr1:5210403-5212137 REVERSE LENGTH=295;; (*ITAG) Solyc05g008450.2.1 (e_value=7e-170) genomic_reference:SL2.40ch05 gene_region:2800495-2805716 transcript_region:SL2.40ch05:2800495..2805716- go_terms:GO:0005507 functional_description:"Oxidoreductase FAD/NAD(P)-binding domain protein (AHRD V1 **-* B8JDQ6_ANAD2); contains Interpro domain(s) IPR001433 Oxidoreductase FAD/NAD(P)-binding "; GO:0005507 NbS00057600g0010.1 protein AED:0.00 eAED:0.00 QI:86|1|1|1|1|1|3|354|86; (*ITAG) Solyc05g055250.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:64118836-64123310 transcript_region:SL2.40ch05:64118836..64123310- functional_description:"Unknown Protein (AHRD V1)"; NbS00057600g0009.1 protein AED:0.41 eAED:0.42 QI:174|0.66|0.75|1|0.66|1|4|0|61; (*GB) gi|357511115|ref|XP_003625846.1| (e_value=6e-35) hypothetical protein MTR_7g104930 [Medicago truncatula];; (*SWP) sp|O82221|RUXG_ARATH (e_value=2e-35) Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1;; (*TAIR) AT2G23930.1 (e_value=1e-36) | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182353-10183026 FORWARD LENGTH=80;; (*ITAG) Solyc11g006820.1.1 (e_value=3e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1390382-1392866 transcript_region:SL2.40ch11:1390382..1392866- functional_description:"Small nuclear ribonucleoprotein G (AHRD V1 ***- B6SK31_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00057600g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|60; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=8e-15) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=1e-15) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*ITAG) Solyc01g095760.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:78718439-78719988 transcript_region:SL2.40ch01:78718439..78719988+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00057600g0011.1 protein AED:0.36 eAED:0.79 QI:0|0|0|1|0|0|2|0|143 NbS00018651g0009.1 protein AED:0.12 eAED:0.12 QI:36|0|0.5|1|1|0.5|2|0|637; (*GB) gi|350538507|ref|NP_001234858.1| (e_value=0.0) EIN3-binding F-box protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=0.0) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1;; (*TAIR) AT2G25490.1 (e_value=0.0) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628;; (*ITAG) Solyc12g009560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2815885-2818657 transcript_region:SL2.40ch12:2815885..2818657+ functional_description:"F-box/LRR-repeat protein (AHRD V1 *-*- C0S347_PARBP); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018651g0008.1 protein AED:0.17 eAED:0.17 QI:72|0.66|0.75|0.81|0.66|0.62|16|719|463; (*GB) gi|350535735|ref|NP_001234210.1| (e_value=0.0) calcineurin B-like interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q9LDI3|CIPKO_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1;; (*TAIR) AT5G35410.1 (e_value=0.0) | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein kinase superfamily protein | chr5:13634933-13638062 FORWARD LENGTH=446;; (*ITAG) Solyc12g009570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2827273-2833740 transcript_region:SL2.40ch12:2827273..2833740- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 09 (AHRD V1 ***- A5BZV3_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00043086g0003.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.5|1|1|1|6|0|310; (*GB) gi|350538149|ref|NP_001234585.1| (e_value=0.0) chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum];; (*SWP) sp|O20252|S17P_SPIOL (e_value=0.0) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=2e-177) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00058396g0001.1 protein AED:0.13 eAED:0.13 QI:337|0.8|0.90|1|1|1|11|361|509; (*GB) gi|225457921|ref|XP_002272757.1| (e_value=0.0) PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RAG2|ESYT1_PONAB (e_value=3e-27) Extended synaptotagmin-1 OS=Pongo abelii GN=ESYT1 PE=2 SV=2;; (*TAIR) AT2G20990.1 (e_value=0.0) | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541;; (*ITAG) Solyc01g111520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89504374-89512877 transcript_region:SL2.40ch01:89504374..89512877- go_terms:GO:0005509 functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005509 NbS00058396g0004.1 protein AED:0.29 eAED:0.31 QI:0|0.5|0|1|1|1|3|0|81; (*GB) gi|17066705|gb|AAL35365.1|AF442387_1 (e_value=7e-50) ascorbate peroxidase [Capsicum annuum];; (*SWP) sp|Q42564|APX3_ARATH (e_value=3e-44) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1;; (*TAIR) AT4G35000.1 (e_value=2e-45) | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16665007-16667541 REVERSE LENGTH=287;; (*ITAG) Solyc01g111510.2.1 (e_value=8e-52) genomic_reference:SL2.40ch01 gene_region:89495534-89500705 transcript_region:SL2.40ch01:89495534..89500705- go_terms:GO:0016688 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q8W4V7_CAPAN); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0016688 NbS00058396g0006.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|269 NbS00005659g0005.1 protein AED:0.24 eAED:0.28 QI:0|0.33|0.14|1|0.33|0.28|7|0|543; (*GB) gi|359487518|ref|XP_002278737.2| (e_value=2e-131) PREDICTED: uncharacterized protein LOC100263144 [Vitis vinifera];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=2e-53) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT5G27830.1 (e_value=2e-72) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9861344-9862742 FORWARD LENGTH=300;; (*ITAG) Solyc01g099850.2.1 (e_value=8e-169) genomic_reference:SL2.40ch01 gene_region:81749334-81753535 transcript_region:SL2.40ch01:81749334..81753535+ functional_description:"Multi-pass transmembrane protein (AHRD V1 ***- Q5CLX7_CRYHO); contains Interpro domain(s) IPR018143 Folate receptor, conserved region "; NbS00012701g0011.1 protein AED:0.37 eAED:0.69 QI:0|0|0|0.66|1|1|3|0|59 NbS00012701g0020.1 protein AED:0.19 eAED:0.24 QI:271|0.45|0.33|1|0.36|0.41|12|0|580; (*GB) gi|125556311|gb|EAZ01917.1| (e_value=2e-150) hypothetical protein OsI_23945 [Oryza sativa Indica Group];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=2e-122) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=1e-123) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc07g006300.2.1 (e_value=9e-143) genomic_reference:SL2.40ch07 gene_region:1096789-1105446 transcript_region:SL2.40ch07:1096789..1105446+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00012701g0021.1 protein AED:0.42 eAED:0.89 QI:0|0|0|1|1|1|3|0|63 NbS00021447g0002.1 protein AED:0.00 eAED:0.00 QI:31|1|1|1|1|1|2|0|204 NbS00001454g0008.1 protein AED:0.02 eAED:0.02 QI:87|1|1|1|0.66|0.75|4|198|173; (*GB) gi|282153480|gb|ADA77529.1| (e_value=1e-110) flowering locus T protein [Solanum tuberosum];; (*SWP) sp|Q93WI9|HD3A_ORYSJ (e_value=1e-95) Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1;; (*TAIR) AT1G65480.1 (e_value=3e-96) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc03g063100.1.1 (e_value=4e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:30564833-30568648 transcript_region:SL2.40ch03:30564833..30568648+ go_terms:GO:0008429 functional_description:"SELF PRUNING 3D"; GO:0008429 NbS00001454g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.6|1|0.75|0.6|5|0|379; (*GB) gi|255569839|ref|XP_002525883.1| (e_value=1e-171) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=1e-167) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=1e-168) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40045892-40050013 transcript_region:SL2.40ch02:40045892..40050013- go_terms:GO:0015198 functional_description:"Yellow stripe-like protein 2.1 (Fragment) (AHRD V1 ***- B4ZYE4_BRAJU); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00054352g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|1|1|-1|1|1|0|111; (*ITAG) Solyc08g079590.1.1 (e_value=8e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60261959-60264342 transcript_region:SL2.40ch08:60261959..60264342+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *--- D7ME07_ARALY)"; NbS00054352g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|128; (*ITAG) Solyc08g082510.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62444057-62445175 transcript_region:SL2.40ch08:62444057..62445175+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00003874g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|1|1|3|0|281; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=3e-114) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=3e-82) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=2e-83) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=5e-117) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00013634g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.2|0|0.66|0.6|0.66|6|0|288; (*GB) gi|225426236|ref|XP_002263697.1| (e_value=5e-88) PREDICTED: bidirectional sugar transporter SWEET4 [Vitis vinifera];; (*SWP) sp|Q8LBF7|SWET7_ARATH (e_value=2e-77) Bidirectional sugar transporter SWEET7 OS=Arabidopsis thaliana GN=SWEET7 PE=2 SV=1;; (*TAIR) AT4G10850.1 (e_value=2e-78) | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family protein | chr4:6675068-6676718 FORWARD LENGTH=258;; (*ITAG) Solyc08g082770.2.1 (e_value=2e-132) genomic_reference:SL2.40ch08 gene_region:62627026-62629694 transcript_region:SL2.40ch08:62627026..62629694- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00018846g0014.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.66|0.5|0.66|3|0|177; (*GB) gi|224118136|ref|XP_002317740.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52960.1 (e_value=3e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21477250-21478269 FORWARD LENGTH=170;; (*ITAG) Solyc03g007540.2.1 (e_value=1e-59) genomic_reference:SL2.40ch03 gene_region:2111581-2114951 transcript_region:SL2.40ch03:2111581..2114951- functional_description:"Unknown Protein (AHRD V1)"; NbS00018846g0002.1 protein AED:0.05 eAED:0.05 QI:275|1|1|1|0.72|0.5|12|1515|1099; (*GB) gi|255545090|ref|XP_002513606.1| (e_value=0.0) multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00018846g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.66|0.75|4|0|977; (*GB) gi|225462675|ref|XP_002266751.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243267 [Vitis vinifera];; (*TAIR) AT5G52950.1 (e_value=1e-112) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21473887-21476939 REVERSE LENGTH=948;; (*ITAG) Solyc03g007550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2115577-2119868 transcript_region:SL2.40ch03:2115577..2119868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053317g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|1130; (*GB) gi|225469045|ref|XP_002267070.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245966 [Vitis vinifera];; (*TAIR) AT4G23440.1 (e_value=0.0) | Symbols: | Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964;; (*ITAG) Solyc08g081260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61486528-61489521 transcript_region:SL2.40ch08:61486528..61489521+ go_terms:GO:0031224,GO:0017111 functional_description:"Tir-nbs resistance protein (AHRD V1 **-- B9GWT3_POPTR); contains Interpro domain(s) IPR000157 Toll-Interleukin receptor "; GO:0031224,GO:0017111 NbS00038250g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|110; (*GB) gi|33151040|gb|AAP97398.1| (e_value=3e-59) Em protein [Quercus robur];; (*SWP) sp|Q02400|LE193_HORVU (e_value=7e-52) Late embryogenesis abundant protein B19.3 OS=Hordeum vulgare GN=B19.3 PE=2 SV=1;; (*TAIR) AT3G51810.1 (e_value=4e-46) | Symbols: ATEM1, GEA1, AT3, EM1 | Stress induced protein | chr3:19214818-19215461 FORWARD LENGTH=152;; (*ITAG) Solyc09g014750.1.1 (e_value=2e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:6840875-6841180 transcript_region:SL2.40ch09:6840875..6841180+ functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- A4VBF1_9FABA); contains Interpro domain(s) IPR000389 Small hydrophilic plant seed protein "; NbS00038250g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|0.5|2|0|103; (*GB) gi|346306029|gb|AEO22189.1| (e_value=3e-57) ABCG subfamily transporter protein [Solanum tuberosum];; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=6e-42) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=3e-37) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc08g067610.2.1 (e_value=2e-59) genomic_reference:SL2.40ch08 gene_region:53826067-53832536 transcript_region:SL2.40ch08:53826067..53832536+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000573g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|0.66|3|0|507; (*GB) gi|225434441|ref|XP_002277656.1| (e_value=0.0) PREDICTED: sorting nexin-2-like [Vitis vinifera];; (*SWP) sp|B9DFS6|SNX2B_ARATH (e_value=0.0) Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1;; (*TAIR) AT5G07120.1 (e_value=0.0) | Symbols: SNX2b | sorting nexin 2B | chr5:2207065-2209355 REVERSE LENGTH=572;; (*ITAG) Solyc09g031600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:22093043-22095188 transcript_region:SL2.40ch09:22093043..22095188- go_terms:GO:0005543 functional_description:"Sorting nexin 1 (AHRD V1 *-*- Q70YZ8_BRAOL); contains Interpro domain(s) IPR001683 Phox-like "; GO:0005543 NbS00000573g0012.1 protein AED:0.20 eAED:0.21 QI:0|1|0|1|1|0.5|2|0|357; (*GB) gi|297745817|emb|CBI15873.3| (e_value=2e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=2e-164) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=2e-165) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc06g082240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44437686-44440095 transcript_region:SL2.40ch06:44437686..44440095+ go_terms:GO:0004322 functional_description:"Laccase-13 (AHRD V1 ***- D7LZX9_ARALY); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00000573g0010.1 protein AED:0.31 eAED:0.65 QI:120|0|0|1|0|0|2|0|68 NbS00004279g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.8|0.5|0.2|5|0|237; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=2e-144) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-103) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-104) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=7e-137) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00004362g0012.1 protein AED:0.07 eAED:0.09 QI:0|0.66|0.42|1|0.83|0.71|7|895|1755; (*GB) gi|225430107|ref|XP_002281922.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264575 [Vitis vinifera];; (*TAIR) AT4G32620.1 (e_value=1e-157) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr4:15731968-15737222 FORWARD LENGTH=1539;; (*ITAG) Solyc08g067920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54181062-54189739 transcript_region:SL2.40ch08:54181062..54189739+ go_terms:GO:0003676,GO:0008299 functional_description:"Nucleic acid binding protein (AHRD V1 *--- D7M9R5_ARALY); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003676,GO:0008299 NbS00004362g0017.1 protein AED:0.09 eAED:0.14 QI:0|0.27|0.33|0.83|1|1|12|0|572; (*GB) gi|255551110|ref|XP_002516603.1| (e_value=2e-73) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=1e-44) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT4G32630.2 (e_value=3e-61) | Symbols: | ArfGap/RecO-like zinc finger domain-containing protein | chr4:15738315-15741412 FORWARD LENGTH=628;; (*ITAG) Solyc08g067930.2.1 (e_value=1e-175) genomic_reference:SL2.40ch08 gene_region:54195118-54201844 transcript_region:SL2.40ch08:54195118..54201844+ go_terms:GO:0005525,GO:0003924 functional_description:"Arf GTPase activating protein (AHRD V1 *--* D3B9L6_POLPA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0005525,GO:0003924 NbS00036745g0003.1 protein AED:0.08 eAED:0.08 QI:1501|0.76|0.71|1|0.92|0.85|14|180|732; (*GB) gi|225440496|ref|XP_002273930.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase atg-1 [Vitis vinifera];; (*SWP) sp|Q2UGZ7|ATG1_ASPOR (e_value=5e-37) Serine/threonine-protein kinase atg1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg1 PE=3 SV=1;; (*TAIR) AT2G37840.1 (e_value=1e-99) | Symbols: | Protein kinase superfamily protein | chr2:15851978-15856047 FORWARD LENGTH=733;; (*ITAG) Solyc10g084930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63605944-63612784 transcript_region:SL2.40ch10:63605944..63612784+ go_terms:GO:0032259,GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 *-*- Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0032259,GO:0006468 NbS00016541g0014.1 protein AED:0.11 eAED:0.12 QI:0|0.85|0.62|1|0.71|0.5|8|371|1083; (*GB) gi|225426296|ref|XP_002265315.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254675 [Vitis vinifera];; (*SWP) sp|Q8L7I1|Y4193_ARATH (e_value=5e-179) Uncharacterized protein At4g10930 OS=Arabidopsis thaliana GN=At4g10930 PE=2 SV=1;; (*TAIR) AT4G10930.1 (e_value=4e-180) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6705178-6708846 REVERSE LENGTH=984;; (*ITAG) Solyc12g055910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47252798-47265865 transcript_region:SL2.40ch12:47252798..47265865+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7LYU3_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00016541g0004.1 protein AED:0.28 eAED:0.64 QI:0|0|0|0.33|1|1|6|0|95; (*GB) gi|225426296|ref|XP_002265315.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100254675 [Vitis vinifera];; (*ITAG) Solyc12g055910.1.1 (e_value=3e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47252798-47265865 transcript_region:SL2.40ch12:47252798..47265865+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7LYU3_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00021170g0013.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.33|1|0|0|3|0|1061; (*GB) gi|255550970|ref|XP_002516533.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G25930.1 (e_value=0.0) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc08g066210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51851957-51855494 transcript_region:SL2.40ch08:51851957..51855494- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00021170g0012.1 protein AED:0.08 eAED:0.08 QI:347|0.91|0.84|1|0.75|0.76|13|304|856; (*GB) gi|356515639|ref|XP_003526506.1| (e_value=0.0) PREDICTED: poly(A) polymerase-like [Glycine max];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=2e-125) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT4G32850.6 (e_value=0.0) | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15850134-15854351 FORWARD LENGTH=738;; (*ITAG) Solyc08g066200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51839180-51851039 transcript_region:SL2.40ch08:51839180..51851039+ go_terms:GO:0005515,GO:0004652 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region "; GO:0005515,GO:0004652 NbS00025067g0008.1 protein AED:0.23 eAED:0.23 QI:141|1|0.93|1|0.8|0.68|16|370|373; (*GB) gi|228535376|gb|ACQ44245.1| (e_value=0.0) chlorophyll synthase [Nicotiana tabacum];; (*SWP) sp|Q38833|CHLG_ARATH (e_value=0.0) Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1;; (*TAIR) AT3G51820.1 (e_value=0.0) | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase family protein | chr3:19216301-19218934 REVERSE LENGTH=387;; (*ITAG) Solyc09g014760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6841510-6847724 transcript_region:SL2.40ch09:6841510..6847724- go_terms:GO:0046408 functional_description:"Chlorophyll synthase (AHRD V1 **** C3W4Q2_TOBAC); contains Interpro domain(s) IPR011799 Chlorophyll synthase, ChlG "; GO:0046408 NbS00009019g0003.1 protein AED:0.01 eAED:0.01 QI:410|1|1|1|1|1|2|357|266; (*GB) gi|380719865|gb|AFD63133.1| (e_value=3e-128) senescence-associated protein [Vitis quinquangularis];; (*TAIR) AT2G23810.1 (e_value=2e-116) | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352 REVERSE LENGTH=273;; (*ITAG) Solyc07g006280.2.1 (e_value=5e-149) genomic_reference:SL2.40ch07 gene_region:1069324-1072745 transcript_region:SL2.40ch07:1069324..1072745+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00047224g0001.1 protein AED:0.14 eAED:0.37 QI:60|0.5|0.66|1|0|0|3|361|343; (*GB) gi|357462645|ref|XP_003601604.1| (e_value=6e-115) RING finger protein [Medicago truncatula];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=2e-50) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT1G55530.1 (e_value=3e-104) | Symbols: | RING/U-box superfamily protein | chr1:20729472-20730527 REVERSE LENGTH=351;; (*ITAG) Solyc01g050040.2.1 (e_value=6e-95) genomic_reference:SL2.40ch01 gene_region:43180160-43181597 transcript_region:SL2.40ch01:43180160..43181597- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00060757g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0.33|0.33|1|1|3|1093|156; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=1e-17) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=8e-17) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00015998g0013.1 protein AED:0.09 eAED:0.10 QI:0|0.87|0.66|1|0.87|0.66|9|0|1070; (*GB) gi|359486781|ref|XP_002278108.2| (e_value=0.0) PREDICTED: pumilio homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9ZW07|PUM1_ARATH (e_value=0.0) Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=2 SV=1;; (*TAIR) AT2G29200.1 (e_value=0.0) | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968;; (*ITAG) Solyc04g011580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3998019-4005142 transcript_region:SL2.40ch04:3998019..4005142- go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00015998g0012.1 protein AED:0.04 eAED:0.15 QI:0|0|0.33|1|1|0.33|3|1113|356; (*GB) gi|225438611|ref|XP_002276585.1| (e_value=5e-74) PREDICTED: DAZ-associated protein 1-like [Vitis vinifera];; (*SWP) sp|Q99729|ROAA_HUMAN (e_value=3e-19) Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens GN=HNRNPAB PE=1 SV=2;; (*TAIR) AT2G41060.2 (e_value=1e-58) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17127138-17128493 FORWARD LENGTH=451;; (*ITAG) Solyc04g011560.2.1 (e_value=2e-131) genomic_reference:SL2.40ch04 gene_region:3985755-3989214 transcript_region:SL2.40ch04:3985755..3989214- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00015998g0011.1 protein AED:0.24 eAED:0.24 QI:287|0.9|0.90|1|0.6|0.63|11|25|381; (*GB) gi|135669|sp|P14232.1|TGA1A_TOBAC (e_value=0.0) RecName: Full=TGACG-sequence-specific DNA-binding protein TGA-1A; Short=ASF-1 protein; Short=TGA1a;; (*SWP) sp|P14232|TGA1A_TOBAC (e_value=0.0) TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1;; (*TAIR) AT5G65210.5 (e_value=6e-154) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g011670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4150679-4155134 transcript_region:SL2.40ch04:4150679..4155134+ go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00025908g0005.1 protein AED:0.10 eAED:0.10 QI:130|1|0.5|1|1|1|2|0|107; (*GB) gi|225430081|ref|XP_002281853.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100250753 [Vitis vinifera];; (*TAIR) AT4G32590.2 (e_value=1e-17) | Symbols: | 2Fe-2S ferredoxin-like superfamily protein | chr4:15721417-15722266 FORWARD LENGTH=130;; (*ITAG) Solyc08g022140.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:12638687-12639035 transcript_region:SL2.40ch08:12638687..12639035- functional_description:"Electron carrier/ electron transporter/ iron ion binding protein (AHRD V1 *-*- B6SS37_MAIZE)"; NbS00025908g0008.1 protein AED:0.22 eAED:0.22 QI:92|0.8|0.83|1|0.8|1|6|427|400; (*GB) gi|255539300|ref|XP_002510715.1| (e_value=5e-122) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G20830.1 (e_value=1e-103) | Symbols: MCD1 | multiple chloroplast division site 1 | chr1:7242933-7244736 FORWARD LENGTH=349;; (*ITAG) Solyc08g042080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29022159-29030975 transcript_region:SL2.40ch08:29022159..29030975- functional_description:"Unknown Protein (AHRD V1)"; NbS00046604g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|115825|sp|P07369.1|CB2G_SOLLC (e_value=0.0) RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic; AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags: Precursor;; (*SWP) sp|P07369|CB2G_SOLLC (e_value=0.0) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-175) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00046604g0004.1 protein AED:0.24 eAED:0.36 QI:213|0|0.5|1|0|0.5|2|0|154; (*GB) gi|255569898|ref|XP_002525912.1| (e_value=9e-40) DELLA protein SLR1, putative [Ricinus communis];; (*SWP) sp|Q9LPR8|SCL3_ARATH (e_value=3e-20) Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1;; (*TAIR) AT1G50420.1 (e_value=2e-21) | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482;; (*ITAG) Solyc12g099900.1.1 (e_value=3e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65187350-65188756 transcript_region:SL2.40ch12:65187350..65188756+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B9NHP2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00046604g0005.1 protein AED:0.36 eAED:0.75 QI:0|0|0|1|0|0|2|0|120; (*GB) gi|255569898|ref|XP_002525912.1| (e_value=1e-33) DELLA protein SLR1, putative [Ricinus communis];; (*SWP) sp|Q8GVE1|CIGR2_ORYSJ (e_value=2e-22) Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1;; (*TAIR) AT2G04890.1 (e_value=8e-22) | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720575-1721816 REVERSE LENGTH=413;; (*ITAG) Solyc12g099900.1.1 (e_value=8e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65187350-65188756 transcript_region:SL2.40ch12:65187350..65188756+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B9NHP2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00052490g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|255581902|ref|XP_002531750.1| (e_value=9e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G57685.1 (e_value=5e-15) | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 | chr5:23366356-23366802 REVERSE LENGTH=148;; (*ITAG) Solyc07g006600.1.1 (e_value=1e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1448338-1448895 transcript_region:SL2.40ch07:1448338..1448895+ functional_description:"GDU1 (AHRD V1 *-*- B6TNE4_MAIZE)"; NbS00023435g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0|1|0.66|0.75|4|0|663; (*GB) gi|147816692|emb|CAN77769.1| (e_value=0.0) hypothetical protein VITISV_009237 [Vitis vinifera];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=6e-177) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=5e-178) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00019516g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|224109126|ref|XP_002315092.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT1G23000.1 (e_value=2e-12) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:8143614-8144865 FORWARD LENGTH=358;; (*ITAG) Solyc05g054250.1.1 (e_value=2e-54) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:63355135-63356097 transcript_region:SL2.40ch05:63355135..63356097- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00055544g0003.1 protein AED:0.14 eAED:0.14 QI:239|1|1|1|1|1|9|220|415; (*GB) gi|359480853|ref|XP_002277922.2| (e_value=0.0) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Vitis vinifera];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=7e-128) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT4G36945.1 (e_value=7e-170) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:17420098-17422047 REVERSE LENGTH=408;; (*ITAG) Solyc02g093310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48793892-48797052 transcript_region:SL2.40ch02:48793892..48797052- go_terms:GO:0023034,GO:0006629,GO:0005975 functional_description:"MAP-like protein kinase (AHRD V1 **-- O23190_ARATH); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005975 NbS00041867g0002.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|2|0|122; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-26) hypothetical protein [Nicotiana tabacum]; NbS00049437g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|83 NbS00049437g0008.1 protein AED:0.35 eAED:0.55 QI:55|0|0|1|0.4|0.33|6|0|196; (*ITAG) Solyc10g049480.1.1 (e_value=4e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00049437g0007.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.6|0|0|5|0|153; (*GB) gi|218186171|gb|EEC68598.1| (e_value=2e-13) hypothetical protein OsI_36954 [Oryza sativa Indica Group];; (*ITAG) Solyc03g013270.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:3988591-3991209 transcript_region:SL2.40ch03:3988591..3991209+ functional_description:"Helitron helicase-like protein (AHRD V1 ***- D0P001_PHYIN)"; NbS00019964g0003.1 protein AED:0.33 eAED:0.40 QI:0|0|0|1|1|1|2|0|92; (*GB) gi|255559310|ref|XP_002520675.1| (e_value=8e-35) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q9LYC6|GRC11_ARATH (e_value=3e-35) Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1;; (*TAIR) AT3G62950.1 (e_value=2e-36) | Symbols: | Thioredoxin superfamily protein | chr3:23266303-23266614 FORWARD LENGTH=103;; (*ITAG) Solyc09g074580.1.1 (e_value=4e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61920745-61921053 transcript_region:SL2.40ch09:61920745..61921053- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9W1_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00019964g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|152; (*GB) gi|162464180|ref|NP_001105391.1| (e_value=4e-59) 40S ribosomal protein S8 [Zea mays];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=1e-60) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=4e-50) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=4e-56) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00010904g0001.1 protein AED:0.48 eAED:0.57 QI:0|0|0|1|0|0|2|0|93 NbS00052632g0002.1 protein AED:0.44 eAED:0.45 QI:0|0|0|0.6|0|0|5|0|137; (*GB) gi|81301625|ref|YP_398920.1| (e_value=2e-20) NADH dehydrogenase subunit 5 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BX5|NU5C_NICTO (e_value=5e-22) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana tomentosiformis GN=ndhF PE=3 SV=1;; (*ITAG) ATCG01010.1 (e_value=1e-16) | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=746;; (*ITAG) Solyc01g017090.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:23876221-23876888 transcript_region:SL2.40ch01:23876221..23876888+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit L (AHRD V1 *-*- NUOL_NEIMA); contains Interpro domain(s) IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup "; GO:0055114 NbS00056279g0001.1 protein AED:0.34 eAED:0.44 QI:0|0.66|0.5|1|0.33|0.25|4|247|83; (*GB) gi|356567286|ref|XP_003551852.1| (e_value=2e-16) PREDICTED: HEAT repeat-containing protein 5B-like [Glycine max];; (*TAIR) AT1G67140.3 (e_value=7e-15) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2223;; (*ITAG) Solyc02g085810.2.1 (e_value=6e-24) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00057866g0010.1 protein AED:0.05 eAED:0.09 QI:0|0|0|1|0.75|0.6|5|0|713; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=4e-171) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=7e-118) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=5e-119) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc11g072140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52465079-52467632 transcript_region:SL2.40ch11:52465079..52467632- go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00011598g0003.1 protein AED:0.10 eAED:0.19 QI:0|0|0|1|0|0|2|0|199; (*GB) gi|297789647|ref|XP_002862767.1| (e_value=4e-16) hypothetical protein ARALYDRAFT_333222 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G18670.1 (e_value=1e-15) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc05g041440.2.1 (e_value=1e-18) genomic_reference:SL2.40ch05 gene_region:50947911-50949818 transcript_region:SL2.40ch05:50947911..50949818- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH)"; GO:0005515 NbS00028637g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.72|0.58|1|0.81|0.66|12|0|693; (*GB) gi|5669151|gb|AAD46186.1| (e_value=0.0) plasma membrane proton ATPase [Nicotiana plumbaginifolia];; (*SWP) sp|Q03194|PMA4_NICPL (e_value=0.0) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT1G80660.1 (e_value=0.0) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc03g117150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60436921-60440907 transcript_region:SL2.40ch03:60436921..60440907+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00026400g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|9|110; (*GB) gi|359476397|ref|XP_003631830.1| (e_value=2e-11) PREDICTED: protein TAP1 precursor-like [Vitis vinifera];; (*ITAG) Solyc08g067940.2.1 (e_value=7e-43) genomic_reference:SL2.40ch08 gene_region:54210984-54212844 transcript_region:SL2.40ch08:54210984..54212844+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003434g0013.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|107 NbS00003434g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.25|0.4|1|0.25|0|5|128|241; (*GB) gi|493723|emb|CAA45523.1| (e_value=2e-121) photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum];; (*SWP) sp|P12360|CB11_SOLLC (e_value=4e-115) Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1;; (*TAIR) AT3G54890.1 (e_value=1e-114) | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241;; (*ITAG) Solyc05g056070.2.1 (e_value=1e-120) genomic_reference:SL2.40ch05 gene_region:64606977-64608378 transcript_region:SL2.40ch05:64606977..64608378+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 ***- CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00003434g0016.1 protein AED:0.21 eAED:0.22 QI:3|1|0.66|1|0.5|0.66|3|388|102; (*GB) gi|297734340|emb|CBI15587.3| (e_value=2e-53) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57860.2 (e_value=5e-49) | Symbols: | Ubiquitin-like superfamily protein | chr5:23437991-23439087 FORWARD LENGTH=95;; (*ITAG) Solyc05g056060.2.1 (e_value=1e-51) genomic_reference:SL2.40ch05 gene_region:64601085-64608155 transcript_region:SL2.40ch05:64601085..64608155+ functional_description:"Ubiquitin-like protein (Fragment) (AHRD V1 *-*- A6N0B7_ORYSI); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00003434g0014.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|0|0|3|0|379; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-51) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc03g122200.1.1 (e_value=3e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00034101g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.6|0.5|1|0.4|0.33|6|0|785; (*GB) gi|225456727|ref|XP_002268222.1| (e_value=0.0) PREDICTED: RINT1-like protein-like [Vitis vinifera];; (*TAIR) AT3G47700.1 (e_value=0.0) | Symbols: MAG2 | RINT-1 / TIP-1 family | chr3:17583773-17586578 REVERSE LENGTH=795;; (*ITAG) Solyc03g113000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57356347-57363214 transcript_region:SL2.40ch03:57356347..57363214- go_terms:GO:0006810 functional_description:"Chromosome structural maintenance protein-like (AHRD V1 **-- Q6YUW7_ORYSJ); contains Interpro domain(s) IPR007528 RINT-1/TIP-1 "; GO:0006810 NbS00034101g0002.1 protein AED:0.26 eAED:0.27 QI:103|1|0.5|1|0|0|2|0|389; (*GB) gi|147810884|emb|CAN67279.1| (e_value=6e-175) hypothetical protein VITISV_022021 [Vitis vinifera];; (*SWP) sp|Q9CA63|FBK29_ARATH (e_value=7e-132) F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1;; (*TAIR) AT1G74510.1 (e_value=5e-133) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:28006065-28007420 FORWARD LENGTH=451;; (*ITAG) Solyc03g113010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57366645-57367970 transcript_region:SL2.40ch03:57366645..57367970- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KS27_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00034101g0009.1 protein AED:0.45 eAED:0.55 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|359473368|ref|XP_003631294.1| (e_value=3e-33) PREDICTED: F-box/kelch-repeat protein SKIP11-like [Vitis vinifera];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=2e-29) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT1G14330.1 (e_value=6e-31) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:4890375-4891700 REVERSE LENGTH=441;; (*ITAG) Solyc03g113010.1.1 (e_value=9e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57366645-57367970 transcript_region:SL2.40ch03:57366645..57367970- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KS27_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00040903g0005.1 protein AED:0.12 eAED:0.12 QI:4|1|1|1|1|1|7|25|273; (*GB) gi|359478710|ref|XP_002282495.2| (e_value=1e-124) PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Vitis vinifera];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=2e-111) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT1G08080.1 (e_value=2e-119) | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase 7 | chr1:2517022-2518546 REVERSE LENGTH=275;; (*ITAG) Solyc11g069640.1.1 (e_value=5e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51355366-51357989 transcript_region:SL2.40ch11:51355366..51357989- go_terms:GO:0006730 functional_description:"Carbonic anhydrase family protein (AHRD V1 ***- D7KHY6_ARALY); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0006730 NbS00040903g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|3|0|322; (*GB) gi|224104673|ref|XP_002313523.1| (e_value=2e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|O04086|Y1105_ARATH (e_value=3e-24) Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1;; (*TAIR) AT2G33580.1 (e_value=5e-37) | Symbols: | Protein kinase superfamily protein | chr2:14219848-14221842 REVERSE LENGTH=664;; (*ITAG) Solyc11g069630.1.1 (e_value=7e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51351654-51353722 transcript_region:SL2.40ch11:51351654..51353722- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00040903g0006.1 protein AED:0.37 eAED:0.45 QI:0|0|0|1|0|0|2|0|155; (*GB) gi|290490584|dbj|BAI79279.1| (e_value=1e-28) LysM type receptor kinase [Lotus japonicus];; (*ITAG) Solyc11g069630.1.1 (e_value=2e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51351654-51353722 transcript_region:SL2.40ch11:51351654..51353722- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00032474g0001.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|1|1|4|0|188; (*GB) gi|225462172|ref|XP_002267512.1| (e_value=7e-57) PREDICTED: protein Iojap [Vitis vinifera];; (*SWP) sp|Q41822|IOJAP_MAIZE (e_value=4e-37) Protein Iojap OS=Zea mays GN=Ij PE=2 SV=1;; (*TAIR) AT3G12930.1 (e_value=1e-56) | Symbols: | Lojap-related protein | chr3:4128465-4129616 FORWARD LENGTH=238;; (*ITAG) Solyc07g066460.2.1 (e_value=1e-99) genomic_reference:SL2.40ch07 gene_region:65108401-65112171 transcript_region:SL2.40ch07:65108401..65112171- functional_description:"Iojap like protein (AHRD V1 *-*- B0C3C4_ACAM1); contains Interpro domain(s) IPR004394 Iojap-related protein "; NbS00032474g0011.1 protein AED:0.34 eAED:0.40 QI:0|0.33|0|1|1|1|4|0|577; (*GB) gi|225462179|ref|XP_002266949.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255982 [Vitis vinifera];; (*TAIR) AT3G12940.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4130242-4131912 REVERSE LENGTH=474;; (*ITAG) Solyc07g066450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65104448-65108270 transcript_region:SL2.40ch07:65104448..65108270+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001751g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|519; (*GB) gi|190607689|gb|ACE79503.1| (e_value=2e-179) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-76) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-73) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc07g049700.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57376807-57379383 transcript_region:SL2.40ch07:57376807..57379383- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00001751g0006.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|0.5|0.33|3|0|282; (*GB) gi|356600304|gb|AET22503.1| (e_value=1e-31) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-14) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc10g008240.2.1 (e_value=1e-34) genomic_reference:SL2.40ch10 gene_region:2346611-2349504 transcript_region:SL2.40ch10:2346611..2349504+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00001751g0101.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|332 NbS00001751g0113.1 protein AED:0.12 eAED:0.12 QI:5|0.71|0.62|1|0.14|0.12|8|571|394 NbS00001751g0114.1 protein AED:0.37 eAED:0.37 QI:195|1|0.83|1|0.8|0.83|6|0|160 NbS00019778g0004.1 protein AED:0.07 eAED:0.07 QI:184|0.5|0.33|1|0.5|0.33|3|0|321; (*GB) gi|218138216|gb|ACK57683.1| (e_value=9e-151) peroxidase 4 [Litchi chinensis];; (*SWP) sp|Q96520|PER12_ARATH (e_value=2e-129) Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1;; (*TAIR) AT1G71695.1 (e_value=1e-130) | Symbols: | Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358;; (*ITAG) Solyc04g071890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56506704-56508808 transcript_region:SL2.40ch04:56506704..56508808+ go_terms:GO:0004601 functional_description:"Peroxidase 4 (AHRD V1 **** B7UCP4_LITCN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00032016g0004.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|0|0|2|0|199; (*GB) gi|239984608|sp|P06254.3|NU1C_TOBAC (e_value=5e-98) RecName: Full=NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 1; Short=NDH subunit 1; AltName: Full=NADH-plastoquinone oxidoreductase subunit 1;; (*SWP) sp|P06254|NU1C_TOBAC (e_value=2e-99) NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3;; (*ITAG) ATCG01100.1 (e_value=2e-78) | Symbols: NDHA | NADH dehydrogenase family protein | chrC:119847-122009 REVERSE LENGTH=360;; (*ITAG) Solyc02g011800.1.1 (e_value=4e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4985089-4985561 transcript_region:SL2.40ch02:4985089..4985561- go_terms:GO:0016020 functional_description:"NAD(P)H-quinone oxidoreductase subunit 1 (AHRD V1 ***- D3WEI6_LIQST); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00032016g0003.1 protein AED:0.33 eAED:0.50 QI:0|0|0|1|0|0|3|0|121; (*GB) gi|108773185|ref|YP_635695.1| (e_value=1e-46) NADH dehydrogenase subunit 7 [Solanum tuberosum];; (*SWP) sp|Q2VEC5|NDHH_SOLTU (e_value=4e-48) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Solanum tuberosum GN=ndhH PE=3 SV=1;; (*ITAG) ATCG01110.1 (e_value=1e-41) | Symbols: NDHH | NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393;; (*ITAG) Solyc12g035590.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:27019862-27020186 transcript_region:SL2.40ch12:27019862..27020186- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- D5RRQ2_9PROT); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00025297g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|106; (*GB) gi|296082314|emb|CBI21319.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G41050.1 (e_value=4e-32) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:16433478-16434076 REVERSE LENGTH=172;; (*ITAG) Solyc02g094330.2.1 (e_value=1e-63) genomic_reference:SL2.40ch02 gene_region:49465193-49466605 transcript_region:SL2.40ch02:49465193..49466605- functional_description:"Pollen proteins Ole e I family protein (AHRD V1 ***- B6SLJ6_MAIZE)"; NbS00025297g0006.1 protein AED:0.11 eAED:0.11 QI:192|1|1|1|1|1|14|502|389; (*GB) gi|225451511|ref|XP_002272485.1| (e_value=0.0) PREDICTED: actin-related protein 2 [Vitis vinifera];; (*SWP) sp|Q9LSD6|ARP2_ARATH (e_value=0.0) Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1;; (*TAIR) AT3G27000.1 (e_value=0.0) | Symbols: ARP2, ATARP2, WRM | actin related protein 2 | chr3:9952787-9955784 REVERSE LENGTH=389;; (*ITAG) Solyc02g094320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49456402-49464809 transcript_region:SL2.40ch02:49456402..49464809+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q16P63_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00030071g0004.1 protein AED:0.08 eAED:0.08 QI:205|0.72|0.80|0.92|0.84|0.84|26|338|1136; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=0.0) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00036074g0005.1 protein AED:0.14 eAED:0.26 QI:0|0|0|1|0|0.33|3|0|237; (*GB) gi|224089188|ref|XP_002308654.1| (e_value=3e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25500.1 (e_value=2e-26) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbC24528422g0001.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|1|1|2|0|74; (*GB) gi|356545743|ref|XP_003541295.1| (e_value=8e-37) PREDICTED: myosin-Vb-like [Glycine max];; (*SWP) sp|P54696|MYOH_DICDI (e_value=1e-22) Myosin-H heavy chain OS=Dictyostelium discoideum GN=myoH PE=4 SV=3;; (*TAIR) AT1G08730.1 (e_value=4e-38) | Symbols: XIC, ATXIC | Myosin family protein with Dil domain | chr1:2779963-2788325 FORWARD LENGTH=1538;; (*ITAG) Solyc06g083960.1.1 (e_value=4e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00024795g0007.1 protein AED:0.15 eAED:0.15 QI:12|0.68|0.65|0.96|0.8|0.84|26|162|1536; (*GB) gi|297743203|emb|CBI36070.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XIE2|AB36G_ARATH (e_value=0.0) ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1;; (*TAIR) AT1G59870.1 (e_value=0.0) | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | ABC-2 and Plant PDR ABC-type transporter family protein | chr1:22034661-22039844 FORWARD LENGTH=1469;; (*ITAG) Solyc03g120980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63257744-63266892 transcript_region:SL2.40ch03:63257744..63266892+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00038757g0001.1 protein AED:0.20 eAED:0.20 QI:3|1|0.5|1|0|0.5|2|0|67; (*GB) gi|297830940|ref|XP_002883352.1| (e_value=1e-21) hypothetical protein ARALYDRAFT_479742 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G22290.1 (e_value=2e-23) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc07g044810.2.1 (e_value=3e-24) genomic_reference:SL2.40ch07 gene_region:55163956-55178160 transcript_region:SL2.40ch07:55163956..55178160- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00042532g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|0.5|0.66|0.75|4|0|300; (*GB) gi|255571640|ref|XP_002526765.1| (e_value=7e-127) Makorin-1, putative [Ricinus communis];; (*SWP) sp|E0X9N4|C3H69_ARATH (e_value=5e-112) Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1;; (*TAIR) AT3G08505.1 (e_value=3e-107) | Symbols: | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr3:2580603-2582043 REVERSE LENGTH=323;; (*ITAG) Solyc10g038000.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:18403923-18415752 transcript_region:SL2.40ch10:18403923..18415752+ go_terms:GO:0005515,GO:0003682 functional_description:"Makorin ring finger protein 1 (Fragment) (AHRD V1 *--- E0A921_SHEEP); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0003682 NbS00062075g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|789; (*GB) gi|225454028|ref|XP_002274837.1| (e_value=0.0) PREDICTED: scarecrow-like protein 6-like [Vitis vinifera];; (*SWP) sp|O81316|SCL6_ARATH (e_value=2e-116) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=2e-117) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc01g090950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76416878-76419772 transcript_region:SL2.40ch01:76416878..76419772- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9GPD0_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00000361g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.85|1|0.83|0.71|7|414|546; (*GB) gi|350539281|ref|NP_001234129.1| (e_value=0.0) calnexin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|P29402|CALX1_ARATH (e_value=0.0) Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1;; (*TAIR) AT5G61790.1 (e_value=0.0) | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530;; (*ITAG) Solyc06g068700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38979365-38982564 transcript_region:SL2.40ch06:38979365..38982564- go_terms:GO:0005509 functional_description:"Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR001580 Calreticulin/calnexin "; GO:0005509 NbS00000361g0010.1 protein AED:0.36 eAED:0.42 QI:0|0|0|1|0.5|0.33|3|0|117; (*GB) gi|350537985|ref|NP_001233809.1| (e_value=2e-35) monoterpene synthase 2 [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=5e-27) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25810.1 (e_value=5e-16) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:9430805-9433844 FORWARD LENGTH=598;; (*ITAG) Solyc01g105880.2.1 (e_value=4e-38) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00000361g0009.1 protein AED:0.36 eAED:0.56 QI:0|0|0|1|1|1|2|0|112; (*GB) gi|147775442|emb|CAN64943.1| (e_value=8e-18) hypothetical protein VITISV_001721 [Vitis vinifera];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=3e-15) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT4G16730.1 (e_value=3e-15) | Symbols: TPS02 | terpene synthase 02 | chr4:9403119-9406003 FORWARD LENGTH=539;; (*ITAG) Solyc01g105850.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:85639651-85643163 transcript_region:SL2.40ch01:85639651..85643163+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0034768,GO:0050551 NbS00021376g0003.1 protein AED:0.71 eAED:0.75 QI:0|0|0|0.5|1|1|2|0|74 NbS00035760g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|57 NbS00035760g0016.1 protein AED:0.11 eAED:0.11 QI:93|0.75|0.6|1|0.75|0.8|5|403|207; (*GB) gi|40748265|gb|AAR89617.1| (e_value=4e-140) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|P51427|RS52_ARATH (e_value=8e-122) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=6e-123) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=5e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00035760g0017.1 protein AED:0.13 eAED:0.14 QI:5|0.57|0.5|1|0.85|0.75|8|0|574; (*GB) gi|225441575|ref|XP_002276712.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241826 [Vitis vinifera];; (*TAIR) AT3G58480.1 (e_value=7e-155) | Symbols: | calmodulin-binding family protein | chr3:21629341-21631853 FORWARD LENGTH=575;; (*ITAG) Solyc10g078650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59714870-59717884 transcript_region:SL2.40ch10:59714870..59717884- functional_description:"Calmodulin-binding protein (AHRD V1 *--- A2I5F3_BETVU)"; NbS00035760g0003.1 protein AED:0.23 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|717|215; (*GB) gi|359482137|ref|XP_003632718.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera];; (*TAIR) AT5G18130.2 (e_value=3e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:5995634-5996389 FORWARD LENGTH=251;; (*ITAG) Solyc10g078590.1.1 (e_value=2e-53) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59689717-59691185 transcript_region:SL2.40ch10:59689717..59691185- functional_description:"Unknown Protein (AHRD V1)"; NbS00035760g0010.1 protein AED:0.41 eAED:0.41 QI:0|0|0.5|0.5|1|1|2|391|82; (*GB) gi|297739775|emb|CBI29957.3| (e_value=3e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46302|RS28_MAIZE (e_value=2e-24) 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1;; (*TAIR) AT5G64140.1 (e_value=5e-24) | Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64;; (*ITAG) Solyc10g078630.1.1 (e_value=7e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbS00025861g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|0|0|2|722|132; (*ITAG) Solyc02g067910.1.1 (e_value=7e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32579545-32579922 transcript_region:SL2.40ch02:32579545..32579922+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013177 Protein of unknown function DUF1713, mitochondria "; NbS00025861g0010.1 protein AED:0.22 eAED:0.22 QI:242|0.75|0.8|1|0.5|0.6|5|153|382; (*GB) gi|225452252|ref|XP_002269274.1| (e_value=6e-170) PREDICTED: abhydrolase domain-containing protein FAM108B1 [Vitis vinifera];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=7e-48) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT3G01690.1 (e_value=3e-132) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:256753-258379 FORWARD LENGTH=361;; (*ITAG) Solyc02g067920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32585049-32590884 transcript_region:SL2.40ch02:32585049..32590884+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 *--- C0HAS5_SALSA)"; NbS00025861g0011.1 protein AED:0.16 eAED:0.16 QI:351|1|0.90|1|1|1|11|0|397; (*GB) gi|225452250|ref|XP_002271417.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase [NAD+] [Vitis vinifera];; (*SWP) sp|P52425|GPDA_CUPLA (e_value=0.0) Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1;; (*TAIR) AT5G40610.1 (e_value=0.0) | Symbols: | NAD-dependent glycerol-3-phosphate dehydrogenase family protein | chr5:16265071-16267258 REVERSE LENGTH=400;; (*ITAG) Solyc02g067930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32590970-32593864 transcript_region:SL2.40ch02:32590970..32593864- go_terms:GO:0004367 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** B4FZV9_MAIZE); contains Interpro domain(s) IPR017751 NAD-dependent glycerol-3-phosphate dehydrogenase, eukaryotic "; GO:0004367 NbS00030385g0002.1 protein AED:0.23 eAED:0.23 QI:309|1|1|1|0.76|0.83|18|118|586; (*GB) gi|359478193|ref|XP_002273984.2| (e_value=0.0) PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera];; (*SWP) sp|Q9ZVT9|C2GR1_ARATH (e_value=4e-21) C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4;; (*TAIR) AT3G59660.1 (e_value=0.0) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594;; (*ITAG) Solyc08g014150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3749408-3764127 transcript_region:SL2.40ch08:3749408..3764127- functional_description:"GRAM domain containing protein (AHRD V1 ***- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00017457g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.73|0.62|0.93|0.46|0.56|16|0|796; (*GB) gi|225428881|ref|XP_002285306.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246943 [Vitis vinifera];; (*SWP) sp|Q8T9S7|PTEN_DICDI (e_value=6e-56) Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1;; (*TAIR) AT3G19420.1 (e_value=0.0) | Symbols: ATPEN2, PEN2 | PTEN 2 | chr3:6731824-6735354 FORWARD LENGTH=611;; (*ITAG) Solyc02g093000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48536255-48540419 transcript_region:SL2.40ch02:48536255..48540419- go_terms:GO:0004722,GO:0004725 functional_description:"Phosphatase and tensin-like A (AHRD V1 **-* C5IX04_APIME); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; GO:0004722,GO:0004725 NbS00017457g0003.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=2e-45) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=2e-34) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=2e-35) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=6e-63) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00023352g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|122; (*GB) gi|255552814|ref|XP_002517450.1| (e_value=4e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G28630.1 (e_value=2e-22) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=335;; (*ITAG) Solyc02g067510.2.1 (e_value=5e-48) genomic_reference:SL2.40ch02 gene_region:32264993-32265936 transcript_region:SL2.40ch02:32264993..32265936+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 ***- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00033716g0005.1 protein AED:0.04 eAED:0.04 QI:131|1|1|1|0.75|0.77|9|331|479; (*GB) gi|119224822|dbj|BAF41218.1| (e_value=0.0) cytochrome P450 [Solanum lycopersicum];; (*SWP) sp|Q6F4F5|C724B_ORYSJ (e_value=0.0) Cytochrome P450 724B1 OS=Oryza sativa subsp. japonica GN=CYP724B1 PE=1 SV=1;; (*TAIR) AT3G50660.1 (e_value=6e-139) | Symbols: DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 | Cytochrome P450 superfamily protein | chr3:18814262-18817168 REVERSE LENGTH=513;; (*ITAG) Solyc07g056160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61341580-61346006 transcript_region:SL2.40ch07:61341580..61346006+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00033716g0002.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|0.5|1|1|4|0|328; (*GB) gi|147787383|emb|CAN62337.1| (e_value=4e-171) hypothetical protein VITISV_004299 [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-90) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=1e-135) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019923g0009.1 protein AED:0.33 eAED:0.37 QI:0|0.5|0.47|0.95|0.7|0.71|21|0|738; (*GB) gi|225460494|ref|XP_002274841.1| (e_value=3e-174) PREDICTED: angio-associated migratory cell protein [Vitis vinifera];; (*SWP) sp|Q7YR70|AAMP_CANFA (e_value=2e-59) Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1;; (*TAIR) AT1G71840.1 (e_value=7e-158) | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407;; (*ITAG) Solyc07g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3832980-3838477 transcript_region:SL2.40ch07:3832980..3838477+ go_terms:GO:0008201 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008201 NbS00037632g0011.1 protein AED:0.19 eAED:0.19 QI:489|0.75|0.8|1|0.5|0.4|5|176|140; (*GB) gi|297739222|emb|CBI28873.3| (e_value=1e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04985.1 (e_value=1e-14) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1416563-1418291 REVERSE LENGTH=193;; (*ITAG) Solyc07g049470.2.1 (e_value=3e-44) genomic_reference:SL2.40ch07 gene_region:57068099-57075183 transcript_region:SL2.40ch07:57068099..57075183- functional_description:"Unknown Protein (AHRD V1)"; NbS00037632g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|65 NbS00037632g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.66|0.83|1|1|6|0|570; (*GB) gi|350538127|ref|NP_001233816.1| (e_value=0.0) laccase precursor [Solanum lycopersicum];; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=0.0) Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1;; (*TAIR) AT3G09220.1 (e_value=0.0) | Symbols: LAC7 | laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567;; (*ITAG) Solyc07g049460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57063539-57067729 transcript_region:SL2.40ch07:57063539..57067729+ go_terms:GO:0005515,GO:0004322 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase "; GO:0005515,GO:0004322 NbS00010072g0002.1 protein AED:0.08 eAED:0.09 QI:0|0.85|0.87|1|1|1|8|353|530; (*GB) gi|114165|sp|P23981.1|AROA1_TOBAC (e_value=0.0) RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase 1; Short=EPSP synthase 1; Flags: Precursor;; (*SWP) sp|P23981|AROA1_TOBAC (e_value=0.0) 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1;; (*TAIR) AT2G45300.1 (e_value=0.0) | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | chr2:18677518-18679868 FORWARD LENGTH=520;; (*ITAG) Solyc01g091190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76636517-76643146 transcript_region:SL2.40ch01:76636517..76643146+ go_terms:GO:0003866,GO:0016765,GO:0003824 functional_description:"3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V1 ***- Q30CZ8_FAGSY); contains Interpro domain(s) IPR001986 3-phosphoshikimate 1-carboxyvinyltransferase, core "; GO:0003866,GO:0016765,GO:0003824 NbS00015576g0004.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|405; (*GB) gi|225435943|ref|XP_002268943.1| (e_value=2e-150) PREDICTED: F-box/kelch-repeat protein At5g26960-like [Vitis vinifera];; (*SWP) sp|Q6NPN5|FK113_ARATH (e_value=6e-140) F-box/kelch-repeat protein At5g26960 OS=Arabidopsis thaliana GN=At5g26960 PE=2 SV=1;; (*TAIR) AT5G26960.1 (e_value=4e-141) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:9484908-9486149 REVERSE LENGTH=413;; (*ITAG) Solyc11g072080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52442431-52443736 transcript_region:SL2.40ch11:52442431..52443736+ functional_description:"Kelch-like 13 (AHRD V1 *-*- Q66IL9_XENTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015576g0014.1 protein AED:0.15 eAED:0.15 QI:157|0.81|0.91|1|1|1|12|332|438; (*GB) gi|224103999|ref|XP_002313277.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54FQ8|EI2BG_DICDI (e_value=1e-42) Translation initiation factor eIF-2B subunit gamma OS=Dictyostelium discoideum GN=eif2b3 PE=3 SV=1;; (*TAIR) AT5G19485.1 (e_value=0.0) | Symbols: | transferases;nucleotidyltransferases | chr5:6573907-6576352 REVERSE LENGTH=456;; (*ITAG) Solyc11g072090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52445313-52451140 transcript_region:SL2.40ch11:52445313..52451140+ go_terms:GO:0016740 functional_description:"Translation initiation factor eIF-2B gamma subunit (AHRD V1 ***- B6TJ84_MAIZE); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0016740 NbS00015576g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0.5|1|1|1|4|396|322; (*GB) gi|255586415|ref|XP_002533853.1| (e_value=7e-115) Speckle-type POZ protein, putative [Ricinus communis];; (*SWP) sp|Q9SRV1|BPM4_ARATH (e_value=1e-57) BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1;; (*TAIR) AT3G03740.1 (e_value=7e-59) | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:937106-939807 REVERSE LENGTH=465;; (*ITAG) Solyc11g072070.1.1 (e_value=1e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52429101-52436697 transcript_region:SL2.40ch11:52429101..52436697- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00015576g0012.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|4|0|110; (*GB) gi|222820580|gb|ACM67640.1| (e_value=5e-21) BTB-POZ and MATH domain protein [Capsicum annuum];; (*SWP) sp|Q9SRV1|BPM4_ARATH (e_value=2e-17) BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1;; (*TAIR) AT3G03740.1 (e_value=2e-18) | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:937106-939807 REVERSE LENGTH=465;; (*ITAG) Solyc01g009060.2.1 (e_value=7e-25) genomic_reference:SL2.40ch01 gene_region:3067813-3074739 transcript_region:SL2.40ch01:3067813..3074739+ go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00015576g0016.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|1|1|3|0|323; (*GB) gi|224057036|ref|XP_002299115.1| (e_value=3e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFQ5|FLS3_ARATH (e_value=3e-45) Flavonol synthase 3 OS=Arabidopsis thaliana GN=FLS3 PE=2 SV=1;; (*TAIR) AT3G13610.1 (e_value=7e-126) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc11g072100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52451744-52453742 transcript_region:SL2.40ch11:52451744..52453742- go_terms:GO:0016491 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00015576g0002.1 protein AED:0.18 eAED:0.21 QI:140|0.5|0.66|1|0|0.66|3|0|470; (*GB) gi|350538853|ref|NP_001234362.1| (e_value=0.0) GAMYB-like2 [Solanum lycopersicum];; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=2e-79) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G11440.1 (e_value=3e-66) | Symbols: ATMYB65, MYB65 | myb domain protein 65 | chr3:3603056-3604929 FORWARD LENGTH=553;; (*ITAG) Solyc06g073640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41820787-41825280 transcript_region:SL2.40ch06:41820787..41825280- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00019692g0010.1 protein AED:0.12 eAED:0.12 QI:184|1|1|1|0.83|1|7|345|552; (*GB) gi|225427621|ref|XP_002269544.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100244212 [Vitis vinifera];; (*SWP) sp|Q8ND56|LS14A_HUMAN (e_value=2e-24) Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3;; (*TAIR) AT1G26110.2 (e_value=9e-42) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc08g075300.2.1 (e_value=3e-60) genomic_reference:SL2.40ch08 gene_region:56554330-56563200 transcript_region:SL2.40ch08:56554330..56563200- functional_description:"Protein LSM14 homolog A-B (AHRD V1 *--- L14AB_XENLA); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00019692g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|225429797|ref|XP_002282811.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100261165 [Vitis vinifera];; (*TAIR) AT4G31360.1 (e_value=1e-37) | Symbols: | selenium binding | chr4:15221945-15223310 FORWARD LENGTH=186;; (*ITAG) Solyc08g080720.2.1 (e_value=6e-43) genomic_reference:SL2.40ch08 gene_region:61100501-61101420 transcript_region:SL2.40ch08:61100501..61101420- go_terms:GO:0045454 functional_description:"Selenoprotein H (AHRD V1 *-*- A8JGP7_CHLRE); contains Interpro domain(s) IPR011893 SelT/selW/selH selenoprotein "; GO:0045454 NbS00019692g0011.1 protein AED:0.41 eAED:0.71 QI:0|0|0|1|0|0|3|0|95 NbS00030216g0005.1 protein AED:0.25 eAED:0.25 QI:123|0.92|0.92|1|0.84|0.92|14|726|533; (*GB) gi|225431914|ref|XP_002276853.1| (e_value=0.0) PREDICTED: dihydrolipoyl dehydrogenase [Vitis vinifera];; (*SWP) sp|P72740|DLDH_SYNY3 (e_value=2e-167) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lpdA PE=1 SV=3;; (*TAIR) AT4G16155.1 (e_value=0.0) | Symbols: | dihydrolipoyl dehydrogenases | chr4:9153570-9157322 REVERSE LENGTH=630;; (*ITAG) Solyc05g053100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62363265-62370881 transcript_region:SL2.40ch05:62363265..62370881+ go_terms:GO:0003916 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- B9RZN2_RICCO); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0003916 NbS00030216g0006.1 protein AED:0.46 eAED:0.46 QI:70|0.66|0.5|0.75|0.66|0.25|4|0|72; (*GB) gi|7959366|dbj|BAA96072.1| (e_value=2e-29) ribosomal protein L29 [Panax ginseng];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=3e-27) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06680.1 (e_value=1e-28) | Symbols: | Ribosomal L29e protein family | chr3:2114402-2114877 REVERSE LENGTH=83;; (*ITAG) Solyc05g053440.2.1 (e_value=1e-31) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbS00052603g0003.1 protein AED:0.06 eAED:0.06 QI:4090|1|1|1|0.62|0.44|9|978|1044; (*GB) gi|225454502|ref|XP_002277075.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241322 [Vitis vinifera];; (*TAIR) AT3G61690.1 (e_value=0.0) | Symbols: | nucleotidyltransferases | chr3:22828349-22833477 FORWARD LENGTH=1303;; (*ITAG) Solyc10g009490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3624898-3635076 transcript_region:SL2.40ch10:3624898..3635076- functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00012987g0018.1 protein AED:0.06 eAED:0.08 QI:36|1|0.88|1|0.88|0.88|18|94|1139; (*GB) gi|359495850|ref|XP_002266404.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249019 [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=7e-101) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G22610.2 (e_value=0.0) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr2:9599550-9604626 FORWARD LENGTH=1062;; (*ITAG) Solyc11g010920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3970759-3977638 transcript_region:SL2.40ch11:3970759..3977638+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00012987g0019.1 protein AED:0.12 eAED:0.14 QI:9|0.5|0.66|1|0.5|0.33|3|179|91; (*GB) gi|255540165|ref|XP_002511147.1| (e_value=2e-24) Protein HVA22, putative [Ricinus communis];; (*SWP) sp|Q9S760|HA22D_ARATH (e_value=1e-13) HVA22-like protein d OS=Arabidopsis thaliana GN=HVA22D PE=2 SV=1;; (*TAIR) AT4G24960.1 (e_value=1e-14) | Symbols: ATHVA22D, HVA22D | HVA22 homologue D | chr4:12828060-12828982 FORWARD LENGTH=135;; (*ITAG) Solyc11g010930.1.1 (e_value=4e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3979867-3980897 transcript_region:SL2.40ch11:3979867..3980897+ functional_description:"HVA22-like protein e (AHRD V1 ***- B6SRB1_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00012987g0020.1 protein AED:0.11 eAED:0.11 QI:55|1|1|1|1|1|4|259|350; (*GB) gi|359495860|ref|XP_002266337.2| (e_value=5e-140) PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like [Vitis vinifera];; (*SWP) sp|P74261|Y1673_SYNY3 (e_value=1e-16) Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1673 PE=3 SV=1;; (*TAIR) AT4G38020.1 (e_value=4e-135) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:17861568-17863010 FORWARD LENGTH=352;; (*ITAG) Solyc11g010900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3959714-3962267 transcript_region:SL2.40ch11:3959714..3962267- go_terms:GO:0006396 functional_description:"RRNA methyltransferase (AHRD V1 ***- A4IRM5_GEOTN); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00012987g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.57|0.85|0.83|0.71|7|302|167; (*GB) gi|323511860|gb|ADX87418.1| (e_value=7e-76) decreased size exclusion limit 1 [Nicotiana benthamiana];; (*SWP) sp|Q54HW5|GNB1L_DICDI (e_value=6e-28) Guanine nucleotide-binding protein subunit beta-like protein 1 homolog OS=Dictyostelium discoideum GN=gnb1l PE=4 SV=1;; (*TAIR) AT4G29860.1 (e_value=6e-59) | Symbols: EMB2757, TAN | Transducin/WD40 repeat-like superfamily protein | chr4:14603296-14605704 REVERSE LENGTH=386;; (*ITAG) Solyc11g010910.1.1 (e_value=4e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3963140-3969591 transcript_region:SL2.40ch11:3963140..3969591- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 ***- Q3MV14_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00012987g0010.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|95; (*ITAG) Solyc00g244290.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00037868g0004.1 protein AED:0.09 eAED:0.09 QI:110|1|1|1|1|1|3|198|167; (*GB) gi|288559134|sp|A1XGB4.1|PIMP1_CAPAN (e_value=3e-71) RecName: Full=CASP-like protein PIMP1; AltName: Full=Pathogen-induced membrane protein 1; Short=CaPIMP1;; (*SWP) sp|A1XGB4|PIMP1_CAPAN (e_value=1e-72) CASP-like protein PIMP1 OS=Capsicum annuum GN=PIMP1 PE=2 SV=1;; (*TAIR) AT2G39530.1 (e_value=3e-26) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16498659-16499401 REVERSE LENGTH=178;; (*ITAG) Solyc04g011490.2.1 (e_value=2e-65) genomic_reference:SL2.40ch04 gene_region:3923552-3925091 transcript_region:SL2.40ch04:3923552..3925091+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO)"; NbS00060910g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|1|4|0|208; (*GB) gi|255550347|ref|XP_002516224.1| (e_value=4e-115) bacterioferritin comigratory protein, putative [Ricinus communis];; (*SWP) sp|Q6QPJ6|PRXQ_POPJC (e_value=2e-113) Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1;; (*TAIR) AT3G26060.1 (e_value=2e-96) | Symbols: ATPRX Q | Thioredoxin superfamily protein | chr3:9524807-9526123 FORWARD LENGTH=216;; (*ITAG) Solyc07g042440.2.1 (e_value=3e-125) genomic_reference:SL2.40ch07 gene_region:52904495-52907327 transcript_region:SL2.40ch07:52904495..52907327- go_terms:GO:0008379 functional_description:"Alkyl hydroperoxide reductase/Thiol specific antioxidant family protein (AHRD V1 **-- B0C2Q1_ACAM1); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379 NbS00023419g0105.1 protein AED:0.15 eAED:0.15 QI:1424|0|0.25|0.5|0|0.25|4|0|114 NbS00023419g0202.1 protein AED:0.23 eAED:0.23 QI:564|0|0.5|1|0|1|2|282|372 NbS00023419g0211.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.33|1|0.5|0.66|3|0|399 NbS00023419g0206.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|107 NbS00023419g0210.1 protein AED:0.00 eAED:0.00 QI:183|1|1|1|0.25|0.4|5|268|153 NbS00023419g0305.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|214 NbS00023419g0308.1 protein AED:0.06 eAED:0.06 QI:314|0.8|0.66|1|0|0.16|6|284|59 NbS00041154g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0|2|185|356; (*GB) gi|225463503|ref|XP_002263467.1| (e_value=2e-121) PREDICTED: sufE-like protein, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=4e-108) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT4G26500.1 (e_value=3e-109) | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | chloroplast sulfur E | chr4:13382456-13383571 REVERSE LENGTH=371;; (*ITAG) Solyc12g015910.1.1 (e_value=6e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5904837-5905898 transcript_region:SL2.40ch12:5904837..5905898+ functional_description:"Cysteine desulfuration protein SufE (AHRD V1 *-*- D3IBF0_9BACT); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00044906g0005.1 protein AED:0.11 eAED:0.14 QI:0|0.33|0|1|0.83|0.57|7|0|1454; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00036179g0010.1 protein AED:0.10 eAED:0.10 QI:550|0.85|1|1|0.57|0.62|8|299|303; (*GB) gi|255561655|ref|XP_002521837.1| (e_value=1e-161) Serine/threonine-protein kinase SAPK10, putative [Ricinus communis];; (*SWP) sp|Q7Y0B9|SAPK8_ORYSJ (e_value=4e-151) Serine/threonine-protein kinase SAPK8 OS=Oryza sativa subsp. japonica GN=SAPK8 PE=2 SV=1;; (*TAIR) AT4G33950.1 (e_value=8e-149) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 | Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362;; (*ITAG) Solyc01g108280.2.1 (e_value=2e-172) genomic_reference:SL2.40ch01 gene_region:87392164-87396307 transcript_region:SL2.40ch01:87392164..87396307- go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00036179g0014.1 protein AED:0.21 eAED:0.22 QI:0|0.75|0.66|1|1|1|9|270|447; (*GB) gi|225428709|ref|XP_002281840.1| (e_value=0.0) PREDICTED: armadillo repeat-containing protein 6 [Vitis vinifera];; (*SWP) sp|Q6NXE6|ARMC6_HUMAN (e_value=1e-30) Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1 SV=2;; (*TAIR) AT4G33945.1 (e_value=3e-165) | Symbols: | ARM repeat superfamily protein | chr4:16268119-16270514 FORWARD LENGTH=464;; (*ITAG) Solyc11g044870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36267509-36275539 transcript_region:SL2.40ch11:36267509..36275539+ go_terms:GO:0005488 functional_description:"Armadillo repeat containing 6 (AHRD V1 ***- Q6DF37_XENTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00036179g0013.1 protein AED:0.83 eAED:0.83 QI:0|0|0.5|0.5|1|1|2|22|88 NbS00048318g0004.1 protein AED:0.04 eAED:0.04 QI:63|0.5|0.66|1|0.5|0.33|3|149|884; (*GB) gi|255561552|ref|XP_002521786.1| (e_value=2e-93) Disease resistance protein RPP13, putative [Ricinus communis];; (*SWP) sp|Q8W474|DRL7_ARATH (e_value=1e-76) Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4;; (*TAIR) AT1G58390.1 (e_value=9e-78) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21690962-21693891 REVERSE LENGTH=907;; (*ITAG) Solyc03g005650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:465276-467974 transcript_region:SL2.40ch03:465276..467974- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00012407g0005.1 protein AED:0.27 eAED:0.27 QI:53|1|1|1|0.33|0.5|4|291|252; (*GB) gi|81076617|gb|ABB55396.1| (e_value=7e-98) unknown [Solanum tuberosum];; (*TAIR) AT1G76020.1 (e_value=2e-75) | Symbols: | Thioredoxin superfamily protein | chr1:28532243-28533542 REVERSE LENGTH=225;; (*ITAG) Solyc12g094380.1.1 (e_value=3e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62939667-62940927 transcript_region:SL2.40ch12:62939667..62940927- functional_description:"DSBA oxidoreductase (AHRD V1 ***- A4T4K6_MYCGI); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00047905g0003.1 protein AED:0.32 eAED:0.35 QI:91|0|0|0.5|1|0.5|2|0|180; (*GB) gi|225453068|ref|XP_002268613.1| (e_value=1e-67) PREDICTED: uncharacterized protein LOC100258732 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=2e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc03g034410.1.1 (e_value=2e-96) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10645044-10645559 transcript_region:SL2.40ch03:10645044..10645559+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 ***- B7FA06_ORYSJ)"; NbS00047905g0002.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|78191462|gb|ABB29952.1| (e_value=8e-28) SLL2-S9-protein-like [Solanum tuberosum];; (*TAIR) AT1G66680.1 (e_value=8e-16) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358;; (*ITAG) Solyc03g034420.1.1 (e_value=5e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:10662636-10665965 transcript_region:SL2.40ch03:10662636..10665965+ functional_description:"SLL2-S9-protein-like (AHRD V1 **-- Q307X9_SOLTU)"; NbS00020283g0005.1 protein AED:0.00 eAED:0.00 QI:152|1|1|1|1|1|2|784|410; (*GB) gi|224130012|ref|XP_002320730.1| (e_value=6e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPC4|PPR1_ARATH (e_value=8e-142) Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1;; (*TAIR) AT1G01970.1 (e_value=6e-143) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:338538-339905 FORWARD LENGTH=409;; (*ITAG) Solyc01g091450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76821359-76826601 transcript_region:SL2.40ch01:76821359..76826601- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020283g0006.1 protein AED:0.07 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|297; (*GB) gi|296089158|emb|CBI38861.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22131|LBD18_ARATH (e_value=1e-72) LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2;; (*TAIR) AT2G45420.1 (e_value=8e-74) | Symbols: LBD18 | LOB domain-containing protein 18 | chr2:18718601-18720445 FORWARD LENGTH=262;; (*ITAG) Solyc01g091420.1.1 (e_value=3e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76810419-76814829 transcript_region:SL2.40ch01:76810419..76814829+ functional_description:"LOB domain protein 30 (AHRD V1 ***- D7M5R6_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00024284g0007.1 protein AED:0.11 eAED:0.11 QI:28|1|1|1|0.75|0.88|9|20|411; (*GB) gi|12229785|sp|O04937.1|DHEA_NICPL (e_value=0.0) RecName: Full=Glutamate dehydrogenase A; Short=GDH A;; (*SWP) sp|O04937|DHEA_NICPL (e_value=0.0) Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1;; (*TAIR) AT5G07440.2 (e_value=0.0) | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2356153-2358012 FORWARD LENGTH=411;; (*ITAG) Solyc03g094010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49163343-49166873 transcript_region:SL2.40ch03:49163343..49166873- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q94IA5_BRANA); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00024284g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|148 NbS00004140g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|470; (*GB) gi|255545228|ref|XP_002513675.1| (e_value=2e-168) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=2e-31) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT5G52430.1 (e_value=1e-119) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:21283093-21285045 REVERSE LENGTH=438;; (*ITAG) Solyc03g025290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7114324-7118700 transcript_region:SL2.40ch03:7114324..7118700- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7MRR7_ARALY)"; NbS00027886g0007.1 protein AED:0.24 eAED:0.24 QI:204|1|1|1|0|0.14|7|400|152; (*GB) gi|323482812|gb|ADX86829.1| (e_value=5e-110) ubiquitin-conjugating enzyme [Nicotiana tabacum];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=9e-110) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=7e-111) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=7e-112) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00027886g0006.1 protein AED:0.07 eAED:0.07 QI:41|0.8|0.83|1|1|1|6|204|312; (*GB) gi|225456705|ref|XP_002273979.1| (e_value=1e-55) PREDICTED: uncharacterized protein LOC100241687 [Vitis vinifera];; (*TAIR) AT5G62550.1 (e_value=2e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105839-25107875 REVERSE LENGTH=487;; (*ITAG) Solyc06g070970.2.1 (e_value=3e-120) genomic_reference:SL2.40ch06 gene_region:39973514-39977462 transcript_region:SL2.40ch06:39973514..39977462+ functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 ***- Q9FJJ1_ARATH)"; NbS00008172g0001.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|241; (*GB) gi|255586691|ref|XP_002533971.1| (e_value=2e-61) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q8L936|CAP16_ARATH (e_value=6e-57) Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2;; (*TAIR) AT4G40080.1 (e_value=5e-58) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:18579371-18580542 FORWARD LENGTH=365;; (*ITAG) Solyc11g010370.1.1 (e_value=1e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3448013-3449062 transcript_region:SL2.40ch11:3448013..3449062+ go_terms:GO:0005488 functional_description:"At4g40080-like protein (Fragment) (AHRD V1 ***- B3SK88_ARALP); contains Interpro domain(s) IPR013809 Epsin-like, N-terminal "; GO:0005488 NbS00029432g0002.1 protein AED:0.25 eAED:0.25 QI:219|0.72|0.83|1|0.81|0.75|12|0|582; (*GB) gi|225441728|ref|XP_002277339.1| (e_value=1e-147) PREDICTED: serine/threonine-protein kinase Nek6-like [Vitis vinifera];; (*SWP) sp|A2ZMH2|NEK2_ORYSI (e_value=3e-75) Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica GN=NEK2 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=1e-77) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc03g059250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:25551514-25557664 transcript_region:SL2.40ch03:25551514..25557664+ go_terms:GO:0004711 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00026644g0005.1 protein AED:0.10 eAED:0.10 QI:135|0.95|0.95|1|0.85|0.90|22|109|685; (*GB) gi|225453899|ref|XP_002278966.1| (e_value=0.0) PREDICTED: protein transport Sec1a [Vitis vinifera];; (*SWP) sp|Q9C5P7|SEC1A_ARATH (e_value=0.0) Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3;; (*TAIR) AT1G02010.1 (e_value=0.0) | Symbols: SEC1A | secretory 1A | chr1:348046-352197 FORWARD LENGTH=673;; (*ITAG) Solyc08g079520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60189768-60206202 transcript_region:SL2.40ch08:60189768..60206202+ go_terms:GO:0017075 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0017075 NbS00026644g0006.1 protein AED:0.14 eAED:0.14 QI:298|0.85|0.87|1|1|1|8|519|352; (*GB) gi|356506038|ref|XP_003521795.1| (e_value=4e-152) PREDICTED: probable S-acyltransferase At3g60800-like [Glycine max];; (*SWP) sp|Q8VYP5|ZDH14_ARATH (e_value=6e-145) Probable S-acyltransferase At3g60800 OS=Arabidopsis thaliana GN=At3g60800 PE=2 SV=1;; (*TAIR) AT3G60800.1 (e_value=4e-146) | Symbols: | DHHC-type zinc finger family protein | chr3:22467486-22469273 REVERSE LENGTH=307;; (*ITAG) Solyc01g091280.2.1 (e_value=3e-175) genomic_reference:SL2.40ch01 gene_region:76690149-76696033 transcript_region:SL2.40ch01:76690149..76696033- go_terms:GO:0016409 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 **** A8N304_COPC7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00025475g0011.1 protein AED:0.18 eAED:0.24 QI:0|0|0|1|0.5|0.33|3|0|530; (*ITAG) Solyc06g072810.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:41291876-41295402 transcript_region:SL2.40ch06:41291876..41295402- functional_description:"Unknown Protein (AHRD V1)"; NbS00025475g0010.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|221; (*ITAG) Solyc06g072810.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:41291876-41295402 transcript_region:SL2.40ch06:41291876..41295402- functional_description:"Unknown Protein (AHRD V1)"; NbS00025475g0009.1 protein AED:0.42 eAED:0.49 QI:0|0.33|0.25|0.75|0.33|0.5|4|554|99; (*GB) gi|225454817|ref|XP_002274926.1| (e_value=2e-46) PREDICTED: ADP-ribosylation factor [Vitis vinifera];; (*SWP) sp|P91924|ARF_DUGJA (e_value=2e-24) ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3;; (*TAIR) AT5G17060.1 (e_value=3e-48) | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor B1B | chr5:5611056-5612639 FORWARD LENGTH=192;; (*ITAG) Solyc03g005300.2.1 (e_value=5e-21) genomic_reference:SL2.40ch03 gene_region:167876-173442 transcript_region:SL2.40ch03:167876..173442- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor C1 (AHRD V1 ***- D7MXG7_ARALY); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00025506g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|476; (*GB) gi|225454342|ref|XP_002275850.1| (e_value=2e-175) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=2e-119) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=4e-109) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=6e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00011176g0001.1 protein AED:0.29 eAED:0.29 QI:288|1|0.8|1|1|1|5|0|273; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=3e-135) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=1e-112) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=1e-113) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc07g049410.2.1 (e_value=3e-153) genomic_reference:SL2.40ch07 gene_region:56998369-57004964 transcript_region:SL2.40ch07:56998369..57004964- go_terms:GO:0005516 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0005516 NbS00015021g0011.1 protein AED:0.28 eAED:0.28 QI:61|1|1|1|1|1|2|322|417; (*GB) gi|195963550|gb|ACG59943.1| (e_value=0.0) metacaspase type II [Nicotiana tabacum];; (*SWP) sp|O64517|MCA4_ARATH (e_value=0.0) Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1;; (*TAIR) AT1G79340.1 (e_value=0.0) | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:29842849-29844368 FORWARD LENGTH=418;; (*ITAG) Solyc09g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67309562-67312625 transcript_region:SL2.40ch09:67309562..67312625- go_terms:GO:0004197 functional_description:"Metacaspase 7 (AHRD V1 ***- D7KWG9_ARALY); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0004197 NbS00015021g0015.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|197; (*GB) gi|350537409|ref|NP_001234292.1| (e_value=2e-128) pirin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=4e-130) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G43120.1 (e_value=5e-88) | Symbols: | RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321;; (*ITAG) Solyc09g098160.2.1 (e_value=3e-131) genomic_reference:SL2.40ch09 gene_region:67314368-67316427 transcript_region:SL2.40ch09:67314368..67316427+ go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00015021g0013.1 protein AED:0.28 eAED:0.34 QI:18|0|0|0.87|0.85|0.75|8|0|865; (*GB) gi|15418710|gb|AAG31014.1| (e_value=0.0) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=6e-88) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=1e-52) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc09g098130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00037914g0009.1 protein AED:0.30 eAED:0.30 QI:393|0.5|0.33|0.66|0.5|0.66|3|0|85; (*GB) gi|356509251|ref|XP_003523364.1| (e_value=6e-16) PREDICTED: uncharacterized protein LOC100809510 [Glycine max];; (*ITAG) Solyc06g051990.2.1 (e_value=8e-27) genomic_reference:SL2.40ch06 gene_region:32148973-32156014 transcript_region:SL2.40ch06:32148973..32156014- go_terms:GO:0005515 functional_description:"At5g24280-like protein (Fragment) (AHRD V1 *-*- Q3YI82_ARALY)"; GO:0005515 NbS00048586g0006.1 protein AED:0.04 eAED:0.06 QI:0|0.75|0.4|1|0.75|0.8|5|0|828; (*GB) gi|255587680|ref|XP_002534354.1| (e_value=3e-83) Transcription factor ICE1, putative [Ricinus communis];; (*SWP) sp|Q9LND0|BH089_ARATH (e_value=1e-49) Transcription factor bHLH89 OS=Arabidopsis thaliana GN=BHLH89 PE=2 SV=1;; (*TAIR) AT1G06170.2 (e_value=7e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1885146-1886564 REVERSE LENGTH=420;; (*ITAG) Solyc01g081100.1.1 (e_value=8e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72947158-72948750 transcript_region:SL2.40ch01:72947158..72948750- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00011576g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|359496983|ref|XP_003635390.1| (e_value=2e-73) PREDICTED: uncharacterized protein LOC100854626 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=6e-34) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083000.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00011576g0008.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.6|0.5|0.8|5|0|140; (*ITAG) Solyc01g094420.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00002454g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|225423507|ref|XP_002269692.1| (e_value=0.0) PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G29360.2 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr3:11267375-11268817 REVERSE LENGTH=480;; (*ITAG) Solyc03g115380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59159703-59161145 transcript_region:SL2.40ch03:59159703..59161145+ go_terms:GO:0003979,GO:0009055 functional_description:"UDP-glucose dehydrogenase (AHRD V1 **** B1N754_EUCGR); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0003979,GO:0009055 NbS00002454g0020.1 protein AED:0.09 eAED:0.09 QI:127|0.84|0.84|1|0.84|0.88|26|428|1002; (*GB) gi|225457283|ref|XP_002284415.1| (e_value=0.0) PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Vitis vinifera];; (*SWP) sp|Q7YR39|DHX16_PANTR (e_value=0.0) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1;; (*TAIR) AT1G32490.1 (e_value=0.0) | Symbols: EMB2733, ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1044;; (*ITAG) Solyc03g115390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00002454g0017.1 protein AED:0.16 eAED:0.16 QI:103|0.75|0.8|1|0.75|0.8|5|283|247; (*GB) gi|79393348|ref|NP_187146.2| (e_value=3e-77) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G04950.1 (e_value=6e-80) | Symbols: | CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | chr3:1371786-1373300 FORWARD LENGTH=231;; (*ITAG) Solyc02g079130.2.1 (e_value=1e-88) genomic_reference:SL2.40ch02 gene_region:38315747-38320771 transcript_region:SL2.40ch02:38315747..38320771- functional_description:"Protein translocase subunit secA (AHRD V1 *-*- SECA_CALS8); contains Interpro domain(s) IPR004027 SEC-C motif "; NbS00002454g0005.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*TAIR) AT1G28395.4 (e_value=1e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9969817-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc02g077730.2.1 (e_value=5e-30) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002454g0105.1 protein AED:0.08 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|471 NbS00002454g0116.1 protein AED:0.31 eAED:0.31 QI:0|1|0.8|1|1|0.8|5|0|304 NbS00002454g0106.1 protein AED:0.27 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|402 NbS00002454g0101.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|170 NbS00002454g0115.1 protein AED:0.14 eAED:0.24 QI:420|0.8|0.90|1|0.9|0.72|11|158|646 NbS00002454g0110.1 protein AED:0.48 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|110 NbS00027302g0002.1 protein AED:0.06 eAED:0.10 QI:0|0|0|1|1|1|3|0|560; (*GB) gi|359483651|ref|XP_003632993.1| (e_value=1e-124) PREDICTED: LOW QUALITY PROTEIN: phospholipase A1-Igamma1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q941F1|PLA15_ARATH (e_value=6e-70) Phospholipase A1-Igamma1, chloroplastic OS=Arabidopsis thaliana GN=At1g06800 PE=1 SV=2;; (*TAIR) AT1G30370.1 (e_value=3e-97) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10719169-10720758 REVERSE LENGTH=529;; (*ITAG) Solyc08g022240.1.1 (e_value=5e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:14568792-14570240 transcript_region:SL2.40ch08:14568792..14570240+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like protein (AHRD V1 ***- Q8LF19_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00027302g0003.1 protein AED:0.12 eAED:0.13 QI:257|0|0|1|0|0|3|0|148; (*GB) gi|357528936|gb|AET80688.1| (e_value=4e-49) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=4e-15) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*ITAG) Solyc11g071470.1.1 (e_value=3e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52013683-52015014 transcript_region:SL2.40ch11:52013683..52015014+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00014354g0007.1 protein AED:0.27 eAED:0.27 QI:106|0.88|0.9|1|0.77|0.8|10|155|452; (*GB) gi|213495900|gb|ACJ49170.1| (e_value=0.0) protection of telomeres 1 protein [Nicotiana tabacum];; (*SWP) sp|Q6NKX5|POT1B_ARATH (e_value=1e-102) Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1;; (*TAIR) AT5G06310.1 (e_value=7e-104) | Symbols: AtPOT1b | Nucleic acid-binding, OB-fold-like protein | chr5:1928468-1930795 FORWARD LENGTH=454;; (*ITAG) Solyc02g070300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34660820-34669876 transcript_region:SL2.40ch02:34660820..34669876+ go_terms:GO:0000784 functional_description:"Protection of telomeres 1 protein (AHRD V1 ***- B7T1K5_SOLTU); contains Interpro domain(s) IPR011564 Telomere end binding protein "; GO:0000784 NbS00014354g0008.1 protein AED:0.12 eAED:0.12 QI:219|1|1|1|0.33|0.5|4|433|81; (*GB) gi|40287540|gb|AAR83884.1| (e_value=3e-54) ly200 protein [Capsicum annuum];; (*SWP) sp|P49211|RL321_ARATH (e_value=2e-52) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=2e-53) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc08g006900.2.1 (e_value=4e-56) genomic_reference:SL2.40ch08 gene_region:1461250-1464221 transcript_region:SL2.40ch08:1461250..1464221- go_terms:GO:0005840 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR001515 Ribosomal protein L32e "; GO:0005840 NbC26024296g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|0|2|0|109; (*ITAG) Solyc10g044500.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00022765g0007.1 protein AED:0.11 eAED:0.15 QI:214|0.66|0.71|1|0.33|0.57|7|241|1133; (*GB) gi|359478009|ref|XP_002268062.2| (e_value=6e-66) PREDICTED: uncharacterized protein LOC100258866 [Vitis vinifera];; (*TAIR) AT4G14200.1 (e_value=8e-20) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8185524-8188667 REVERSE LENGTH=784;; (*ITAG) Solyc09g092550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66946020-66951971 transcript_region:SL2.40ch09:66946020..66951971+ go_terms:GO:0005622 functional_description:"Hypothetical salt-inducible protein (Fragment) (AHRD V1 *-*- Q2Z1Z1_PRUMU)"; GO:0005622 NbS00022765g0010.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0|5|0|305; (*GB) gi|255542144|ref|XP_002512136.1| (e_value=5e-65) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|P24465|C71A1_PERAE (e_value=4e-45) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT3G26180.2 (e_value=4e-56) | Symbols: CYP71B20 | cytochrome P450, family 71, subfamily B, polypeptide 20 | chr3:9578407-9579993 REVERSE LENGTH=368;; (*ITAG) Solyc09g092590.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66963109-66964883 transcript_region:SL2.40ch09:66963109..66964883- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00022765g0012.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|59; (*GB) gi|85068660|gb|ABC69410.1| (e_value=2e-17) CYP71AT2v3 [Nicotiana tabacum];; (*ITAG) Solyc09g092560.2.1 (e_value=2e-22) genomic_reference:SL2.40ch09 gene_region:66953855-66955821 transcript_region:SL2.40ch09:66953855..66955821+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032341g0001.1 protein AED:0.04 eAED:0.04 QI:61|1|1|1|1|1|2|568|212; (*GB) gi|48209965|gb|AAT40528.1| (e_value=9e-69) LOB domain protein 1, putative [Solanum demissum];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=8e-56) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=6e-57) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc11g072470.1.1 (e_value=2e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52734615-52736664 transcript_region:SL2.40ch11:52734615..52736664- functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00032341g0003.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|63 NbS00039365g0005.1 protein AED:0.14 eAED:0.14 QI:340|1|1|1|0.8|0.66|6|282|767; (*GB) gi|356514713|ref|XP_003526048.1| (e_value=0.0) PREDICTED: uncharacterized protein At5g12080-like [Glycine max];; (*SWP) sp|Q9LYG9|MSL10_ARATH (e_value=0.0) Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1;; (*TAIR) AT5G12080.3 (e_value=0.0) | Symbols: MSL10, ATMSL10 | mechanosensitive channel of small conductance-like 10 | chr5:3898182-3900923 REVERSE LENGTH=734;; (*ITAG) Solyc08g061980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47406404-47411399 transcript_region:SL2.40ch08:47406404..47411399- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B6QJY9_PENMQ); contains Interpro domain(s) IPR010920 Like-Sm ribonucleoprotein-related, core "; GO:0016020 NbS00047171g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|744; (*GB) gi|255571544|ref|XP_002526718.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|P93755|C3H30_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g079120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60053436-60055547 transcript_region:SL2.40ch10:60053436..60055547- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 **-- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00025857g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.66|1|0.87|0.88|9|0|437; (*GB) gi|359481563|ref|XP_002277659.2| (e_value=5e-149) PREDICTED: uncharacterized protein LOC100250012 [Vitis vinifera];; (*TAIR) AT5G05140.1 (e_value=4e-94) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436;; (*ITAG) Solyc10g080930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61435700-61439911 transcript_region:SL2.40ch10:61435700..61439911- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 *--- TCEA2_HUMAN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00000749g0003.1 protein AED:0.16 eAED:0.16 QI:270|1|1|1|0.66|0.5|4|328|510; (*GB) gi|125606|sp|P22200.1|KPYC_SOLTU (e_value=0.0) RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK;; (*SWP) sp|P22200|KPYC_SOLTU (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00002856g0006.1 protein AED:0.34 eAED:0.34 QI:137|1|1|1|1|0.8|5|9|201; (*GB) gi|297738629|emb|CBI27874.3| (e_value=3e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57040.1 (e_value=2e-84) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr5:23084035-23085116 REVERSE LENGTH=197;; (*ITAG) Solyc07g040950.2.1 (e_value=4e-100) genomic_reference:SL2.40ch07 gene_region:48524186-48525741 transcript_region:SL2.40ch07:48524186..48525741- go_terms:GO:0004493 functional_description:"Glyoxalase (AHRD V1 ***- C1E5I0_9CHLO); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004493 NbS00002856g0005.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|123 NbS00002856g0009.1 protein AED:0.12 eAED:0.12 QI:74|0.85|0.87|1|0.85|0.62|8|702|704; (*GB) gi|297738630|emb|CBI27875.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=0.0) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G57035.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr5:23080743-23083819 FORWARD LENGTH=789;; (*ITAG) Solyc07g040940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48517549-48523205 transcript_region:SL2.40ch07:48517549..48523205+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00000396g0012.1 protein AED:0.00 eAED:0.00 QI:117|1|1|1|1|1|3|217|358; (*GB) gi|6014908|sp|Q42948.1|DAPA_TOBAC (e_value=0.0) RecName: Full=Dihydrodipicolinate synthase, chloroplastic; Short=DHDPS; Flags: Precursor;; (*SWP) sp|Q42948|DAPA_TOBAC (e_value=0.0) Dihydrodipicolinate synthase, chloroplastic OS=Nicotiana tabacum GN=DHPS1 PE=2 SV=1;; (*TAIR) AT2G45440.1 (e_value=0.0) | Symbols: DHDPS2 | dihydrodipicolinate synthase | chr2:18731294-18732867 FORWARD LENGTH=365;; (*ITAG) Solyc03g044660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:14272745-14277006 transcript_region:SL2.40ch03:14272745..14277006- go_terms:GO:0008840,GO:0003855 functional_description:"Dihydrodipicolinate synthase 2 (AHRD V1 **** D7LCJ3_ARALY); contains Interpro domain(s) IPR005263 Dihydrodipicolinate synthase subfamily "; GO:0008840,GO:0003855 NbS00000396g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|0.5|2|765|270; (*GB) gi|224081064|ref|XP_002306281.1| (e_value=2e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08770.1 (e_value=2e-49) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2855638-2856531 REVERSE LENGTH=297; NbS00000396g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.69|0.84|0.75|0.76|13|576|309; (*GB) gi|225438323|ref|XP_002273073.1| (e_value=3e-127) PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera];; (*SWP) sp|Q9R0X5|RPGR_MOUSE (e_value=5e-26) X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=1;; (*TAIR) AT5G08710.1 (e_value=1e-121) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:2834858-2837866 REVERSE LENGTH=434;; (*ITAG) Solyc05g056590.2.1 (e_value=2e-146) genomic_reference:SL2.40ch05 gene_region:64996467-65017054 transcript_region:SL2.40ch05:64996467..65017054+ go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 **-- B9PXR3_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00005818g0009.1 protein AED:0.06 eAED:0.06 QI:254|1|1|1|0.4|0.5|6|202|176; (*GB) gi|351725951|ref|NP_001237366.1| (e_value=2e-36) uncharacterized protein LOC100305578 [Glycine max];; (*SWP) sp|O04616|Y4115_ARATH (e_value=2e-34) Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1;; (*TAIR) AT4G01150.1 (e_value=1e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164;; (*ITAG) Solyc03g007830.2.1 (e_value=6e-74) genomic_reference:SL2.40ch03 gene_region:2380349-2382848 transcript_region:SL2.40ch03:2380349..2382848- functional_description:"Threonine endopeptidase (AHRD V1 *--- B6TCN7_MAIZE)"; NbS00005818g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|640; (*GB) gi|147805129|emb|CAN64485.1| (e_value=0.0) hypothetical protein VITISV_035038 [Vitis vinifera];; (*SWP) sp|P0C899|PP271_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1;; (*TAIR) AT3G49142.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=686;; (*ITAG) Solyc03g007840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2384211-2386244 transcript_region:SL2.40ch03:2384211..2386244- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00005818g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|23499320|gb|AAN37389.1|AF435026_1 (e_value=0.0) class III chitinase [Capsicum annuum];; (*SWP) sp|P19172|CHIA_ARATH (e_value=1e-147) Acidic endochitinase OS=Arabidopsis thaliana GN=CHIB1 PE=2 SV=2;; (*TAIR) AT5G24090.1 (e_value=1e-148) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc01g095310.1.1 (e_value=5e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78387634-78388542 transcript_region:SL2.40ch01:78387634..78388542+ go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00005818g0010.1 protein AED:0.07 eAED:0.07 QI:118|1|1|1|1|1|9|52|822; (*GB) gi|75282482|sp|Q43191.1|LOX15_SOLTU (e_value=0.0) RecName: Full=Probable linoleate 9S-lipoxygenase 5; AltName: Full=Leaf lipoxygenase;; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=0.0) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=0.0) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81264237-81268132 transcript_region:SL2.40ch01:81264237..81268132+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00045512g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|76161006|gb|ABA40466.1| (e_value=1e-41) unknown [Solanum tuberosum];; (*TAIR) AT1G05770.1 (e_value=1e-24) | Symbols: | Mannose-binding lectin superfamily protein | chr1:1725547-1726250 REVERSE LENGTH=184;; (*ITAG) Solyc09g083030.1.1 (e_value=2e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64105104-64105607 transcript_region:SL2.40ch09:64105104..64105607- go_terms:GO:0005529 functional_description:"Myrosinase binding protein (AHRD V1 **-* P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00011859g0005.1 protein AED:0.07 eAED:0.07 QI:122|1|1|1|1|1|2|242|350; (*GB) gi|225443207|ref|XP_002270687.1| (e_value=8e-72) PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Vitis vinifera];; (*SWP) sp|Q4KLT0|RN217_XENLA (e_value=9e-20) Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1;; (*TAIR) AT3G14250.1 (e_value=3e-60) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc04g077000.2.1 (e_value=5e-168) genomic_reference:SL2.40ch04 gene_region:59546873-59549624 transcript_region:SL2.40ch04:59546873..59549624+ go_terms:GO:0008270 functional_description:"Predicted E3 ubiquitin ligase (AHRD V1 **-- Q2UQ22_ASPOR); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00057339g0008.1 protein AED:0.12 eAED:0.12 QI:175|0.87|0.77|1|0.5|0.33|9|136|189; (*GB) gi|255545652|ref|XP_002513886.1| (e_value=3e-96) phosphoglycerate mutase, putative [Ricinus communis];; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=2e-49) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1;; (*TAIR) AT1G22170.1 (e_value=4e-91) | Symbols: | Phosphoglycerate mutase family protein | chr1:7826603-7828055 FORWARD LENGTH=334;; (*ITAG) Solyc04g072800.2.1 (e_value=3e-94) genomic_reference:SL2.40ch04 gene_region:57368160-57370526 transcript_region:SL2.40ch04:57368160..57370526+ go_terms:GO:0046538,GO:0019901 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 "; GO:0046538,GO:0019901 NbS00057339g0009.1 protein AED:0.45 eAED:0.66 QI:0|0|0|1|1|1|3|0|179; (*GB) gi|195963550|gb|ACG59943.1| (e_value=3e-66) metacaspase type II [Nicotiana tabacum];; (*SWP) sp|O64517|MCA4_ARATH (e_value=5e-56) Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1;; (*TAIR) AT1G79340.1 (e_value=4e-57) | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:29842849-29844368 FORWARD LENGTH=418;; (*ITAG) Solyc09g098150.2.1 (e_value=4e-66) genomic_reference:SL2.40ch09 gene_region:67309562-67312625 transcript_region:SL2.40ch09:67309562..67312625- go_terms:GO:0004197 functional_description:"Metacaspase 7 (AHRD V1 ***- D7KWG9_ARALY); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0004197 NbS00021228g0009.1 protein AED:0.13 eAED:0.13 QI:210|1|1|1|1|1|2|197|323; (*GB) gi|225451061|ref|XP_002262723.1| (e_value=7e-158) PREDICTED: uncharacterized protein LOC100255595 [Vitis vinifera];; (*SWP) sp|Q99288|DET1_YEAST (e_value=3e-31) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=5e-151) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc10g045430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28869219-28874687 transcript_region:SL2.40ch10:28869219..28874687+ go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00021228g0013.1 protein AED:0.21 eAED:0.21 QI:111|1|1|1|0.71|0.87|8|421|400; (*GB) gi|225454801|ref|XP_002274201.1| (e_value=0.0) PREDICTED: protein SMG9 [Vitis vinifera];; (*SWP) sp|Q5PQS6|SMG9_RAT (e_value=1e-27) Protein SMG9 OS=Rattus norvegicus GN=Smg9 PE=2 SV=1;; (*ITAG) Solyc02g094260.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:49423295-49424509 transcript_region:SL2.40ch02:49423295..49424509+ functional_description:"Protein SMG9 (AHRD V1 ***- SMG9_RAT)"; NbS00021228g0011.1 protein AED:0.58 eAED:0.58 QI:0|0|0.5|0.5|0|0.5|2|292|119 NbS00041833g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.9|0.72|1|0.8|0.63|11|984|487; (*GB) gi|297745248|emb|CBI40328.3| (e_value=3e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5E9Q1|PGLT1_BOVIN (e_value=2e-15) Protein O-glucosyltransferase 1 OS=Bos taurus GN=POGLUT1 PE=2 SV=1;; (*TAIR) AT3G61270.1 (e_value=2e-143) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr3:22678270-22680212 FORWARD LENGTH=498;; (*ITAG) Solyc01g094380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77653952-77658616 transcript_region:SL2.40ch01:77653952..77658616+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00009475g0003.1 protein AED:0.05 eAED:0.05 QI:154|1|1|1|1|1|3|286|343; (*GB) gi|225457423|ref|XP_002284926.1| (e_value=1e-117) PREDICTED: myb-related protein 306 [Vitis vinifera];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=5e-115) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT3G47600.1 (e_value=2e-103) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333;; (*ITAG) Solyc03g116100.2.1 (e_value=2e-165) genomic_reference:SL2.40ch03 gene_region:59662688-59664351 transcript_region:SL2.40ch03:59662688..59664351- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q6R036_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00011532g0005.1 protein AED:0.24 eAED:0.24 QI:82|1|1|1|0.5|0.66|3|879|189; (*GB) gi|17065916|emb|CAC80883.1| (e_value=7e-56) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O23976|C76B1_HELTU (e_value=8e-37) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45570.1 (e_value=1e-25) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc02g090300.2.1 (e_value=5e-64) genomic_reference:SL2.40ch02 gene_region:46462377-46464211 transcript_region:SL2.40ch02:46462377..46464211+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00011532g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|17065916|emb|CAC80883.1| (e_value=3e-38) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O64636|C76C1_ARATH (e_value=1e-34) Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CYP76C1 PE=2 SV=1;; (*TAIR) AT2G45560.1 (e_value=1e-35) | Symbols: CYP76C1 | cytochrome P450, family 76, subfamily C, polypeptide 1 | chr2:18776391-18778354 REVERSE LENGTH=512;; (*ITAG) Solyc02g090300.2.1 (e_value=8e-51) genomic_reference:SL2.40ch02 gene_region:46462377-46464211 transcript_region:SL2.40ch02:46462377..46464211+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001273g0023.1 protein AED:0.09 eAED:0.09 QI:39|0.58|0.46|0.76|0.91|0.92|13|0|625; (*GB) gi|255572069|ref|XP_002526975.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5E9Y6|PRUNE_BOVIN (e_value=3e-20) Protein prune homolog OS=Bos taurus GN=PRUNE PE=2 SV=1;; (*ITAG) Solyc02g069550.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33979113-33984984 transcript_region:SL2.40ch02:33979113..33984984- functional_description:"Prune homolog 2 (AHRD V1 *-*- D6RTK6_HUMAN)"; NbS00001273g0022.1 protein AED:0.13 eAED:0.17 QI:0|0.37|0.22|1|0.62|0.66|9|0|686; (*GB) gi|225444169|ref|XP_002268607.1| (e_value=0.0) PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=6e-74) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT3G25690.3 (e_value=1e-75) | Symbols: CHUP1 | Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=863;; (*ITAG) Solyc02g069560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33985494-33989608 transcript_region:SL2.40ch02:33985494..33989608- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- A2V813_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; NbS00001273g0021.1 protein AED:0.25 eAED:0.26 QI:0|0.91|0.92|1|0.75|0.69|13|1019|407; (*GB) gi|255578061|ref|XP_002529901.1| (e_value=0.0) UDP-glucose 4-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=0.0) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=0.0) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc02g069580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34003786-34009927 transcript_region:SL2.40ch02:34003786..34009927- go_terms:GO:0048040,GO:0050373 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B1XPB1_SYNP2); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0048040,GO:0050373 NbS00001273g0018.1 protein AED:0.19 eAED:0.19 QI:156|1|0.9|1|1|0.9|10|0|750; (*GB) gi|225444167|ref|XP_002268516.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SA76|PPR64_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1;; (*TAIR) AT1G30610.2 (e_value=0.0) | Symbols: EMB2279 | pentatricopeptide (PPR) repeat-containing protein | chr1:10846676-10850517 FORWARD LENGTH=978;; (*ITAG) Solyc02g069570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33993570-34003635 transcript_region:SL2.40ch02:33993570..34003635+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001273g0025.1 protein AED:0.13 eAED:0.26 QI:0|0|0|1|0.5|0.33|3|0|195; (*ITAG) Solyc02g069540.1.1 (e_value=3e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33977851-33978654 transcript_region:SL2.40ch02:33977851..33978654+ go_terms:GO:0003700 functional_description:"Unknown Protein (AHRD V1)"; GO:0003700 NbS00001273g0020.1 protein AED:0.34 eAED:0.37 QI:0|0.6|0.66|0.83|0.4|0.5|6|243|93; (*GB) gi|255574430|ref|XP_002528128.1| (e_value=7e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55080.1 (e_value=5e-31) | Symbols: MED9 | MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). | chr1:20553121-20554174 REVERSE LENGTH=244;; (*ITAG) Solyc02g069520.2.1 (e_value=3e-44) genomic_reference:SL2.40ch02 gene_region:33969549-33971170 transcript_region:SL2.40ch02:33969549..33971170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049116g0004.1 protein AED:0.05 eAED:0.06 QI:0|0.66|0.25|1|0.66|0.75|4|0|191; (*GB) gi|224099951|ref|XP_002334426.1| (e_value=4e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69V36|Y6944_ORYSJ (e_value=1e-51) B3 domain-containing protein Os06g0194400 OS=Oryza sativa subsp. japonica GN=Os06g0194400 PE=2 SV=1;; (*TAIR) AT5G42700.1 (e_value=1e-50) | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:17122171-17124177 FORWARD LENGTH=211;; (*ITAG) Solyc04g079130.2.1 (e_value=3e-91) genomic_reference:SL2.40ch04 gene_region:61309179-61311733 transcript_region:SL2.40ch04:61309179..61311733- go_terms:GO:0006355 functional_description:"B3 domain-containing protein At5g42700 (AHRD V1 ***- Y5270_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00003322g0008.1 protein AED:0.23 eAED:0.25 QI:0|0.77|0.68|1|0.55|0.52|19|324|733; (*GB) gi|350538715|ref|NP_001234356.1| (e_value=0.0) cullin 4 [Solanum lycopersicum];; (*SWP) sp|Q8LGH4|CUL4_ARATH (e_value=0.0) Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1;; (*TAIR) AT5G46210.1 (e_value=0.0) | Symbols: CUL4, ATCUL4 | cullin4 | chr5:18731569-18736653 REVERSE LENGTH=792;; (*ITAG) Solyc02g021470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13552226-13582979 transcript_region:SL2.40ch02:13552226..13582979- go_terms:GO:0030332 functional_description:"Cullin 4 (AHRD V1 ***- A9LK40_SOLLC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00012205g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|4|0|796; (*GB) gi|359490807|ref|XP_002272450.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255603 [Vitis vinifera];; (*TAIR) AT5G53020.1 (e_value=2e-102) | Symbols: | Ribonuclease P protein subunit P38-related | chr5:21499899-21502235 FORWARD LENGTH=720;; (*ITAG) Solyc03g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46427167-46430205 transcript_region:SL2.40ch03:46427167..46430205- functional_description:"Unknown Protein (AHRD V1)"; NbS00012205g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|225455362|ref|XP_002277435.1| (e_value=2e-61) PREDICTED: vesicle-associated membrane protein 727 [Vitis vinifera];; (*SWP) sp|Q84WF5|VAMPL_ARATH (e_value=9e-17) Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1;; (*TAIR) AT4G27840.1 (e_value=6e-42) | Symbols: | SNARE-like superfamily protein | chr4:13865268-13866050 REVERSE LENGTH=260;; (*ITAG) Solyc03g083070.1.1 (e_value=5e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:46450114-46450905 transcript_region:SL2.40ch03:46450114..46450905- go_terms:GO:0006810 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 *--- D7KE74_ARALY); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00018060g0009.1 protein AED:0.10 eAED:0.10 QI:300|1|1|1|0.14|0.25|8|1597|223; (*GB) gi|302144195|emb|CBI23322.3| (e_value=5e-118) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G18750.3 (e_value=6e-105) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622;; (*ITAG) Solyc02g079040.2.1 (e_value=7e-128) genomic_reference:SL2.40ch02 gene_region:38241517-38248511 transcript_region:SL2.40ch02:38241517..38248511+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00018060g0010.1 protein AED:0.27 eAED:0.29 QI:0|0|0|0.5|0|0.5|2|0|149; (*ITAG) Solyc06g051770.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:31883001-31883555 transcript_region:SL2.40ch06:31883001..31883555- functional_description:"Unknown Protein (AHRD V1)"; NbS00020400g0012.1 protein AED:0.11 eAED:0.13 QI:27|0.66|0.57|0.89|0.72|0.73|19|648|1305; (*GB) gi|296086497|emb|CBI32086.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G05680.1 (e_value=0.0) | Symbols: EMB2016 | embryo defective 2016 | chr3:1660802-1672015 REVERSE LENGTH=2138;; (*ITAG) Solyc03g020020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbS00020400g0010.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.08|1|1|12|0|572; (*GB) gi|296086497|emb|CBI32086.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G05680.1 (e_value=5e-115) | Symbols: EMB2016 | embryo defective 2016 | chr3:1660802-1672015 REVERSE LENGTH=2138;; (*ITAG) Solyc03g020020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbS00015756g0001.1 protein AED:0.29 eAED:0.30 QI:318|0.57|0.5|1|0.85|0.75|8|0|470; (*GB) gi|356531102|ref|XP_003534117.1| (e_value=4e-111) PREDICTED: LOW QUALITY PROTEIN: putative phagocytic receptor 1b-like [Glycine max];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=6e-49) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=6e-111) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc06g048940.2.1 (e_value=6e-125) genomic_reference:SL2.40ch06 gene_region:28496228-28500434 transcript_region:SL2.40ch06:28496228..28500434+ go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00045892g0002.1 protein AED:0.31 eAED:0.63 QI:0|0.25|0|0.4|1|1|5|0|444; (*GB) gi|297827361|ref|XP_002881563.1| (e_value=4e-78) proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O80436|PTR29_ARATH (e_value=6e-79) Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1;; (*TAIR) AT2G38100.1 (e_value=4e-80) | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr2:15948484-15950228 REVERSE LENGTH=521;; (*ITAG) Solyc12g042300.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42880294-42890129 transcript_region:SL2.40ch12:42880294..42890129+ go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00037398g0011.1 protein AED:0.05 eAED:0.06 QI:0|0.4|0.16|1|0.8|0.83|6|0|395; (*GB) gi|224098968|ref|XP_002311338.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPR7|UPS1_ARATH (e_value=0.0) Ureide permease 1 OS=Arabidopsis thaliana GN=UPS1 PE=1 SV=1;; (*TAIR) AT2G03590.1 (e_value=0.0) | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:1095129-1096711 FORWARD LENGTH=390;; (*ITAG) Solyc04g005410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:283826-288980 transcript_region:SL2.40ch04:283826..288980- functional_description:"Ureide permease 2 (AHRD V1 *-*- B6U6B9_MAIZE); contains Interpro domain(s) IPR009834 Fatty acid elongase 3-ketoacyl-CoA synthase 1 "; NbS00037398g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|0.75|0.6|5|375|290; (*GB) gi|363814437|ref|NP_001242853.1| (e_value=1e-42) uncharacterized protein LOC100801269 precursor [Glycine max];; (*SWP) sp|Q93V72|E13L4_ARATH (e_value=3e-26) Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1;; (*TAIR) AT1G18650.1 (e_value=3e-35) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc04g005420.2.1 (e_value=4e-46) genomic_reference:SL2.40ch04 gene_region:290581-296842 transcript_region:SL2.40ch04:290581..296842- functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 *-*- B6UAN6_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00024151g0101.1 protein AED:0.33 eAED:0.33 QI:280|0.88|0.9|1|0.77|0.8|10|0|319 NbS00024151g0114.1 protein AED:0.44 eAED:0.48 QI:0|0.83|0.69|1|0.75|0.76|13|0|364 NbS00034526g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-46) hypothetical protein [Nicotiana tabacum]; NbS00034526g0003.1 protein AED:0.90 eAED:0.90 QI:0|-1|0|1|-1|1|1|0|101 NbS00019339g0017.1 protein AED:0.10 eAED:0.10 QI:0|0.92|0.85|0.92|0.76|0.78|14|1704|454; (*GB) gi|225439856|ref|XP_002278124.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AFC1 [Vitis vinifera];; (*SWP) sp|P51566|AFC1_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2;; (*TAIR) AT3G53570.4 (e_value=0.0) | Symbols: AFC1, AME2, FC1 | FUS3-complementing gene 1 | chr3:19861449-19864125 REVERSE LENGTH=467;; (*ITAG) Solyc05g013770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7077909-7082147 transcript_region:SL2.40ch05:7077909..7082147- go_terms:GO:0003713,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0003713,GO:0004674 NbS00019339g0012.1 protein AED:0.21 eAED:0.26 QI:0|0|0|1|1|0.5|2|0|445; (*GB) gi|359481504|ref|XP_002274656.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIH2|PP414_ARATH (e_value=2e-148) Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1;; (*TAIR) AT5G42450.1 (e_value=1e-149) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:16977297-16978850 FORWARD LENGTH=517;; (*ITAG) Solyc09g005710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:496090-497586 transcript_region:SL2.40ch09:496090..497586+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019339g0018.1 protein AED:0.33 eAED:0.36 QI:112|0.66|0.6|0.9|0.88|0.9|10|0|359; (*GB) gi|225439868|ref|XP_002278566.1| (e_value=2e-166) PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LFG2|DAPF_ARATH (e_value=4e-150) Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1;; (*TAIR) AT3G53580.1 (e_value=3e-151) | Symbols: | diaminopimelate epimerase family protein | chr3:19864784-19866907 FORWARD LENGTH=362;; (*ITAG) Solyc09g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:488084-495891 transcript_region:SL2.40ch09:488084..495891- go_terms:GO:0008837 functional_description:"Diaminopimelate epimerase family protein (AHRD V1 **** D7LUJ8_ARALY); contains Interpro domain(s) IPR001653 Diaminopimelate epimerase "; GO:0008837 NbS00019339g0015.1 protein AED:0.36 eAED:0.39 QI:0|0.5|0|1|1|1|3|0|154; (*GB) gi|585876|sp|Q07761.1|RL23A_TOBAC (e_value=1e-78) RecName: Full=60S ribosomal protein L23a; AltName: Full=L25;; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=3e-80) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=4e-61) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc09g005720.2.1 (e_value=4e-76) genomic_reference:SL2.40ch09 gene_region:498274-500367 transcript_region:SL2.40ch09:498274..500367- go_terms:GO:0003735,GO:0019843 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR001014 Ribosomal protein L23/L25, conserved site "; GO:0003735,GO:0019843 NbS00010886g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.6|0.5|1|0.6|0.66|6|280|497; (*GB) gi|57157621|dbj|BAD83779.1| (e_value=0.0) tryptophan synthase beta subunit [Polygonum tinctorium];; (*SWP) sp|P25269|TRBP2_ARATH (e_value=0.0) Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2;; (*TAIR) AT4G27070.1 (e_value=0.0) | Symbols: TSB2 | tryptophan synthase beta-subunit 2 | chr4:13586564-13588619 FORWARD LENGTH=475;; (*ITAG) Solyc07g064280.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63715597-63719310 transcript_region:SL2.40ch07:63715597..63719310- go_terms:GO:0016833,GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0016833,GO:0004834 NbS00010886g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|101; (*ITAG) Solyc01g017760.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010886g0014.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.5|1|0.8|0.83|6|365|390; (*GB) gi|224124274|ref|XP_002319290.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M5A9|GPT1_ARATH (e_value=1e-165) Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1;; (*TAIR) AT5G54800.1 (e_value=8e-167) | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosphate translocator 1 | chr5:22261408-22263562 FORWARD LENGTH=388;; (*ITAG) Solyc07g064270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63711258-63715720 transcript_region:SL2.40ch07:63711258..63715720+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6-phosphate/phosphate-translocator (AHRD V1 **** O64910_PEA); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00010886g0015.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0.28|1|0|0.14|7|134|572; (*GB) gi|224113879|ref|XP_002316602.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX51|FBL64_ARATH (e_value=4e-38) F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1;; (*TAIR) AT3G59200.1 (e_value=3e-39) | Symbols: | F-box/RNI-like superfamily protein | chr3:21887484-21889214 FORWARD LENGTH=520;; (*ITAG) Solyc07g064260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63701666-63705606 transcript_region:SL2.40ch07:63701666..63705606+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 *-*- D7LTH7_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515 NbS00010886g0112.1 protein AED:0.25 eAED:0.28 QI:525|0.69|0.85|1|0.92|0.92|14|0|518 NbS00010886g0114.1 protein AED:0.39 eAED:0.39 QI:0|1|0.93|1|0.85|0.93|15|4|481 NbS00010886g0110.1 protein AED:0.09 eAED:0.18 QI:0|0|0|1|0|0|2|0|227 NbS00008642g0003.1 protein AED:0.10 eAED:0.10 QI:305|1|1|1|1|1|3|177|240; (*GB) gi|147789556|emb|CAN60849.1| (e_value=6e-49) hypothetical protein VITISV_023571 [Vitis vinifera];; (*TAIR) AT5G35320.1 (e_value=4e-21) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13521893-13523144 FORWARD LENGTH=225;; (*ITAG) Solyc05g046310.2.1 (e_value=2e-79) genomic_reference:SL2.40ch05 gene_region:57671075-57673686 transcript_region:SL2.40ch05:57671075..57673686- functional_description:"Genomic DNA chromosome 5 P1 clone MVP2 (AHRD V1 ***- O65233_ARATH)"; NbS00059858g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|75223179|sp|O80362.1|RK10_TOBAC (e_value=9e-164) RecName: Full=50S ribosomal protein L10, chloroplastic; AltName: Full=CL10; Flags: Precursor;; (*SWP) sp|O80362|RK10_TOBAC (e_value=3e-165) 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1;; (*TAIR) AT5G13510.1 (e_value=1e-102) | Symbols: | Ribosomal protein L10 family protein | chr5:4341294-4341956 FORWARD LENGTH=220;; (*ITAG) Solyc04g009540.1.1 (e_value=2e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2950915-2951604 transcript_region:SL2.40ch04:2950915..2951604+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L10 (AHRD V1 ***- B6SUJ0_MAIZE); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0003735,GO:0005515 NbS00059858g0005.1 protein AED:0.13 eAED:0.13 QI:427|0.87|1|1|0.25|0.22|9|197|116; (*GB) gi|255568177|ref|XP_002525064.1| (e_value=4e-45) glutathione-s-transferase omega, putative [Ricinus communis];; (*SWP) sp|Q9M2W2|GSTL2_ARATH (e_value=1e-41) Glutathione S-transferase L2, chloroplastic OS=Arabidopsis thaliana GN=GSTL2 PE=2 SV=1;; (*TAIR) AT3G55040.1 (e_value=1e-42) | Symbols: GSTL2 | glutathione transferase lambda 2 | chr3:20398718-20400305 REVERSE LENGTH=292;; (*ITAG) Solyc04g009530.2.1 (e_value=9e-67) genomic_reference:SL2.40ch04 gene_region:2943884-2949090 transcript_region:SL2.40ch04:2943884..2949090- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** B3TLW0_ELAGV); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00030061g0007.1 protein AED:0.13 eAED:0.13 QI:243|1|1|1|0.85|0.75|8|1441|373; (*GB) gi|77416977|gb|ABA81884.1| (e_value=7e-108) nuclear RNA binding protein-like [Solanum tuberosum];; (*TAIR) AT4G16830.1 (e_value=8e-39) | Symbols: | Hyaluronan / mRNA binding family | chr4:9470621-9472308 FORWARD LENGTH=355;; (*ITAG) Solyc08g007220.2.1 (e_value=2e-89) genomic_reference:SL2.40ch08 gene_region:1786907-1790103 transcript_region:SL2.40ch08:1786907..1790103- go_terms:GO:0003723 functional_description:"Nuclear RNA binding protein (Fragment) (AHRD V1 **** Q9SQ56_TOBAC); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; GO:0003723 NbS00030061g0008.1 protein AED:0.22 eAED:0.22 QI:14|1|1|1|0|0.5|2|513|372; (*GB) gi|255581972|ref|XP_002531784.1| (e_value=4e-93) transferase, putative [Ricinus communis];; (*TAIR) AT5G02890.1 (e_value=9e-57) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:670207-671454 REVERSE LENGTH=353;; (*ITAG) Solyc08g007210.2.1 (e_value=8e-171) genomic_reference:SL2.40ch08 gene_region:1775628-1777610 transcript_region:SL2.40ch08:1775628..1777610- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 *--- B9IAS9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00030061g0005.1 protein AED:0.24 eAED:0.33 QI:0|0|0|1|1|1|2|0|159; (*GB) gi|264913546|gb|ACY74382.1| (e_value=3e-28) ERF2 transcription factor [Brassica carinata];; (*SWP) sp|O80338|EF101_ARATH (e_value=2e-29) Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1;; (*TAIR) AT5G47220.1 (e_value=1e-30) | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive element binding factor 2 | chr5:19172023-19172754 REVERSE LENGTH=243;; (*ITAG) Solyc08g007230.1.1 (e_value=3e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1811001-1811600 transcript_region:SL2.40ch08:1811001..1811600- go_terms:GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00030061g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|269996964|gb|ACZ57767.1| (e_value=3e-52) glycerolipase A1 [Nicotiana attenuata];; (*SWP) sp|O23522|PLA14_ARATH (e_value=2e-37) Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2;; (*TAIR) AT4G16820.1 (e_value=1e-38) | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily protein | chr4:9467563-9469116 FORWARD LENGTH=517;; (*ITAG) Solyc00g056680.1.1 (e_value=2e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13961934-13963547 transcript_region:SL2.40ch00:13961934..13963547+ go_terms:GO:0006629 functional_description:"Lipase-like protein (AHRD V1 ***- Q949E1_ORYSA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00030061g0010.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|224137904|ref|XP_002326469.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|O23522|PLA14_ARATH (e_value=5e-14) Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2;; (*TAIR) AT4G16820.1 (e_value=3e-15) | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily protein | chr4:9467563-9469116 FORWARD LENGTH=517;; (*ITAG) Solyc06g060870.1.1 (e_value=8e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35271907-35273463 transcript_region:SL2.40ch06:35271907..35273463- go_terms:GO:0006629 functional_description:"Lipase-like protein (AHRD V1 ***- Q949E1_ORYSA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00038825g0005.1 protein AED:0.23 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|189; (*GB) gi|255551819|ref|XP_002516955.1| (e_value=3e-66) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G06840.1 (e_value=9e-49) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2156930-2157624 FORWARD LENGTH=187;; (*ITAG) Solyc01g066440.2.1 (e_value=8e-92) genomic_reference:SL2.40ch01 gene_region:66737901-66739053 transcript_region:SL2.40ch01:66737901..66739053+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040319g0001.1 protein AED:0.00 eAED:0.00 QI:113|1|1|1|0|0.5|2|80|159; (*GB) gi|225428033|ref|XP_002278879.1| (e_value=3e-71) PREDICTED: uncharacterized protein LOC100260571 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=6e-72) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G38580.1 (e_value=5e-73) | Symbols: ATFP6, HIPP26, FP6 | farnesylated protein 6 | chr4:18034596-18035693 FORWARD LENGTH=153;; (*ITAG) Solyc02g083550.1.1 (e_value=8e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41495117-41495669 transcript_region:SL2.40ch02:41495117..41495669+ go_terms:GO:0005515 functional_description:"Metal ion binding protein (AHRD V1 **-* D7MN12_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515 NbS00040319g0007.1 protein AED:0.07 eAED:0.07 QI:394|0.87|0.88|1|0.87|0.77|9|325|222; (*GB) gi|14278856|gb|AAK31299.1| (e_value=1e-122) Rac-like GTPase 1 [Nicotiana tabacum];; (*SWP) sp|Q39435|RAC1_BETVU (e_value=6e-123) Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1;; (*TAIR) AT3G51300.1 (e_value=1e-122) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g083580.2.1 (e_value=6e-125) genomic_reference:SL2.40ch02 gene_region:41510800-41514068 transcript_region:SL2.40ch02:41510800..41514068- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00040319g0006.1 protein AED:0.21 eAED:0.22 QI:15|1|0.33|1|1|0.66|3|455|119; (*GB) gi|356544896|ref|XP_003540883.1| (e_value=2e-79) PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max];; (*SWP) sp|P35133|UBC10_ARATH (e_value=1e-78) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1;; (*TAIR) AT5G53300.4 (e_value=8e-80) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc02g083570.2.1 (e_value=4e-87) genomic_reference:SL2.40ch02 gene_region:41507853-41509331 transcript_region:SL2.40ch02:41507853..41509331- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbC23709070g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|81076490|gb|ABB55394.1| (e_value=2e-53) 40S ribosomal protein S15-like [Solanum tuberosum];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=7e-52) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09510.1 (e_value=3e-52) | Symbols: | Ribosomal protein S19 family protein | chr5:2955698-2956554 REVERSE LENGTH=152;; (*ITAG) Solyc02g082000.2.1 (e_value=4e-56) genomic_reference:SL2.40ch02 gene_region:40322179-40324715 transcript_region:SL2.40ch02:40322179..40324715- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_BRAHW); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00047525g0008.1 protein AED:0.26 eAED:0.26 QI:381|1|1|1|0.66|0.75|4|346|56; (*GB) gi|224086082|ref|XP_002307807.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G42960.1 (e_value=3e-24) | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168;; (*ITAG) Solyc04g082640.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:63847522-63851069 transcript_region:SL2.40ch04:63847522..63851069- functional_description:"Unknown Protein (AHRD V1)"; NbS00047525g0001.1 protein AED:0.35 eAED:0.49 QI:0|0.66|0.25|1|1|1|4|0|178; (*GB) gi|327198779|emb|CBL43264.1| (e_value=1e-113) glyceraldehyde-3-phosphate dehydrogenase [Solanum tuberosum];; (*SWP) sp|P12859|G3PB_PEA (e_value=2e-100) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2;; (*TAIR) AT1G42970.1 (e_value=1e-94) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc12g094640.1.1 (e_value=2e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63152981-63156043 transcript_region:SL2.40ch12:63152981..63156043+ go_terms:GO:0008152,GO:0055114 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 ***- B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00019555g0005.1 protein AED:0.19 eAED:0.19 QI:10|1|1|1|1|1|5|220|369; (*GB) gi|224096804|ref|XP_002310743.1| (e_value=7e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=3e-12) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G37180.1 (e_value=3e-54) | Symbols: | Homeodomain-like superfamily protein | chr4:17504648-17506107 FORWARD LENGTH=356;; (*ITAG) Solyc02g090400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46542531-46544827 transcript_region:SL2.40ch02:46542531..46544827+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7LQI3_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00019555g0007.1 protein AED:0.27 eAED:0.45 QI:47|0|0|1|0|0|2|0|79; (*ITAG) Solyc01g017760.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004201g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|830; (*GB) gi|338190111|gb|AEI84329.1| (e_value=0.0) lectin-domain receptor-like kinase [Nicotiana attenuata];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=2e-139) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=2e-140) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60956155-60957501 transcript_region:SL2.40ch07:60956155..60957501- go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein S6 (AHRD V1 **-- SLSG6_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00004201g0002.1 protein AED:0.43 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|297843202|ref|XP_002889482.1| (e_value=4e-18) hypothetical protein ARALYDRAFT_333714 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G03910.1 (e_value=9e-21) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=6e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00004201g0004.1 protein AED:0.39 eAED:0.63 QI:0|0|0|1|1|1|2|0|124; (*GB) gi|255556764|ref|XP_002519415.1| (e_value=1e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03910.1 (e_value=1e-35) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00004201g0009.1 protein AED:0.34 eAED:0.79 QI:0|0|0|1|0|0|3|0|190; (*GB) gi|225441082|ref|XP_002264567.1| (e_value=3e-19) PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera];; (*TAIR) AT1G03910.1 (e_value=3e-19) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=5e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00005738g0004.1 protein AED:0.25 eAED:0.25 QI:285|0.75|0.8|1|0.5|0.6|5|152|283; (*GB) gi|225460656|ref|XP_002266826.1| (e_value=6e-55) PREDICTED: G-box-binding factor 4 [Vitis vinifera];; (*SWP) sp|P42777|GBF4_ARATH (e_value=5e-29) G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1;; (*TAIR) AT5G44080.1 (e_value=5e-35) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:17738787-17739734 REVERSE LENGTH=315;; (*ITAG) Solyc04g071510.2.1 (e_value=1e-100) genomic_reference:SL2.40ch04 gene_region:56081778-56088951 transcript_region:SL2.40ch04:56081778..56088951- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 *-** B6TN24_MAIZE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00015146g0012.1 protein AED:0.10 eAED:0.18 QI:0|0.25|0.2|1|0.25|0.4|5|0|395; (*GB) gi|224124110|ref|XP_002330107.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=0.0) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=0.0) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc02g089130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45589633-45591730 transcript_region:SL2.40ch02:45589633..45591730- functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00015146g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|6|0|338; (*GB) gi|356567107|ref|XP_003551764.1| (e_value=0.0) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=2e-130) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT1G13680.1 (e_value=3e-157) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:4690409-4692702 FORWARD LENGTH=346;; (*ITAG) Solyc02g089150.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45599499-45601793 transcript_region:SL2.40ch02:45599499..45601793+ go_terms:GO:0023034,GO:0006629 functional_description:"MAPprotein kinase-like protein (AHRD V1 **-- Q6YW97_ORYSJ); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00015146g0011.1 protein AED:0.16 eAED:0.16 QI:172|1|1|1|1|1|6|299|451; (*GB) gi|225456559|ref|XP_002264600.1| (e_value=0.0) PREDICTED: protein COBRA [Vitis vinifera];; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc02g089120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45585636-45589401 transcript_region:SL2.40ch02:45585636..45589401+ functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00015146g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|99; (*GB) gi|3062801|dbj|BAA25685.1| (e_value=2e-41) arginine decarboxylase [Nicotiana sylvestris];; (*SWP) sp|P49726|SPE1_SOLLC (e_value=3e-27) Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G16500.1 (e_value=2e-21) | Symbols: ADC1, ARGDC1, ARGDC, SPE1 | arginine decarboxylase 1 | chr2:7150796-7152904 REVERSE LENGTH=702;; (*ITAG) Solyc10g054440.1.1 (e_value=5e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50892473-50894596 transcript_region:SL2.40ch10:50892473..50894596- go_terms:GO:0008792 functional_description:"Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC); contains Interpro domain(s) IPR002985 Arginine decarboxylase "; GO:0008792 NbS00048446g0001.1 protein AED:0.22 eAED:0.22 QI:299|1|0.66|1|0|0|3|0|423; (*GB) gi|225451255|ref|XP_002277010.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8BG32|PSD11_MOUSE (e_value=6e-133) 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3;; (*TAIR) AT1G29150.1 (e_value=0.0) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419;; (*ITAG) Solyc05g013030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6145882-6147153 transcript_region:SL2.40ch05:6145882..6147153+ go_terms:GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0004175 NbS00008780g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|420; (*GB) gi|255556097|ref|XP_002519083.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8VZ80|PLT5_ARATH (e_value=5e-174) Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2;; (*TAIR) AT3G18830.1 (e_value=3e-175) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539;; (*ITAG) Solyc01g109460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88167522-88170694 transcript_region:SL2.40ch01:88167522..88170694+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_RAT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00014729g0013.1 protein AED:0.11 eAED:0.11 QI:481|1|1|1|0.88|0.9|10|245|1243; (*GB) gi|350535553|ref|NP_001234456.1| (e_value=0.0) aldehyde oxidase [Solanum lycopersicum];; (*SWP) sp|Q7G191|ALDO4_ARATH (e_value=0.0) Aldehyde oxidase 4 OS=Arabidopsis thaliana GN=AAO4 PE=2 SV=2;; (*TAIR) AT1G04580.1 (e_value=0.0) | Symbols: AAO4, ATAO-4, ATAO2, AO4 | aldehyde oxidase 4 | chr1:1252212-1257510 REVERSE LENGTH=1337;; (*ITAG) Solyc11g071600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52100342-52106920 transcript_region:SL2.40ch11:52100342..52106920+ go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Aldehyde oxidase (AHRD V1 ***- Q9FV23_SOLLC); contains Interpro domain(s) IPR002346 Molybdopterin dehydrogenase, FAD-binding "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00014729g0015.1 protein AED:0.14 eAED:0.15 QI:198|0.73|0.75|1|0.46|0.5|16|418|1214; (*GB) gi|225438329|ref|XP_002273254.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255993 [Vitis vinifera];; (*SWP) sp|Q96RT7|GCP6_HUMAN (e_value=3e-22) Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3;; (*TAIR) AT3G43610.1 (e_value=5e-118) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr3:15517772-15523927 REVERSE LENGTH=1207;; (*ITAG) Solyc11g071570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52073568-52089050 transcript_region:SL2.40ch11:52073568..52089050+ go_terms:GO:0005815 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 *-*- Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0005815 NbS00014729g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|82; (*GB) gi|350535489|ref|NP_001234453.1| (e_value=1e-12) aldehyde oxidase [Solanum lycopersicum];; (*ITAG) Solyc01g088180.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74804707-74804901 transcript_region:SL2.40ch01:74804707..74804901+ go_terms:GO:0051536 functional_description:"Aldehyde oxidase (AHRD V1 ***- Q9FV24_SOLLC); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536 NbS00014729g0020.1 protein AED:0.20 eAED:0.20 QI:0|0.57|0.5|1|0.85|0.87|8|0|1056; (*GB) gi|224053809|ref|XP_002297990.1| (e_value=0.0) multidrug resistance protein ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc11g065710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48347701-48350315 transcript_region:SL2.40ch11:48347701..48350315- go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00014729g0019.1 protein AED:0.42 eAED:0.42 QI:0|1|0.6|1|0.25|0.4|5|0|268; (*GB) gi|297742291|emb|CBI34440.3| (e_value=2e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=3e-123) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=2e-124) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc11g065720.1.1 (e_value=6e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48370832-48373571 transcript_region:SL2.40ch11:48370832..48373571+ go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"ABC transporter C family member 10 (AHRD V1 **-- AB10C_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00014729g0018.1 protein AED:0.34 eAED:0.56 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|113205445|gb|AAW28576.2| (e_value=5e-16) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc07g018060.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8977086-8979008 transcript_region:SL2.40ch07:8977086..8979008- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00014729g0017.1 protein AED:0.34 eAED:0.38 QI:8|0|0|1|0|0|2|0|108; (*ITAG) Solyc01g111480.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbC26172507g0002.1 protein AED:0.59 eAED:0.82 QI:0|0.33|0|1|1|1|4|0|161; (*GB) gi|225433053|ref|XP_002284752.1| (e_value=9e-97) PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LSW8|ETFB_ARATH (e_value=2e-89) Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1;; (*TAIR) AT5G43430.3 (e_value=6e-91) | Symbols: ETFBETA | electron transfer flavoprotein beta | chr5:17453831-17455111 FORWARD LENGTH=219;; (*ITAG) Solyc09g089880.2.1 (e_value=4e-108) genomic_reference:SL2.40ch09 gene_region:64846851-64850243 transcript_region:SL2.40ch09:64846851..64850243- go_terms:GO:0009055 functional_description:"Electron transfer flavoprotein beta-subunit (AHRD V1 **** B6TPR6_MAIZE); contains Interpro domain(s) IPR012255 Electron transfer flavoprotein, beta subunit "; GO:0009055 NbS00004795g0001.1 protein AED:0.06 eAED:0.06 QI:293|1|0.88|1|0.75|0.77|9|0|380; (*GB) gi|255561457|ref|XP_002521739.1| (e_value=1e-163) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT2G17500.4 (e_value=5e-149) | Symbols: | Auxin efflux carrier family protein | chr2:7607063-7608990 FORWARD LENGTH=396;; (*ITAG) Solyc02g082450.2.1 (e_value=2e-171) genomic_reference:SL2.40ch02 gene_region:40726154-40728736 transcript_region:SL2.40ch02:40726154..40728736+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7L9F0_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00004795g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|117 NbS00032013g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|255626575|gb|ACU13632.1| (e_value=3e-30) unknown [Glycine max];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=1e-25) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT1G26800.1 (e_value=3e-28) | Symbols: | RING/U-box superfamily protein | chr1:9285576-9286190 REVERSE LENGTH=204;; (*ITAG) Solyc02g088030.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44832538-44832936 transcript_region:SL2.40ch02:44832538..44832936+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00040868g0007.1 protein AED:0.14 eAED:0.17 QI:0|1|0|1|1|1|2|0|172; (*GB) gi|297739342|emb|CBI29332.3| (e_value=1e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|P13853|HS17C_ARATH (e_value=5e-39) 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2;; (*TAIR) AT1G53540.1 (e_value=4e-40) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980510-19980983 FORWARD LENGTH=157;; (*ITAG) Solyc04g072250.2.1 (e_value=2e-53) genomic_reference:SL2.40ch04 gene_region:56842685-56844459 transcript_region:SL2.40ch04:56842685..56844459- go_terms:GO:0042803 functional_description:"class I heat shock protein 1 (AHRD V1 ***- B6TTC8_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0042803 NbS00003717g0027.1 protein AED:0.25 eAED:0.25 QI:248|0.83|0.85|1|0.66|0.71|7|448|199; (*GB) gi|623592|gb|AAA74120.1| (e_value=5e-140) putative [Nicotiana tabacum];; (*SWP) sp|Q41640|RAB7_VIGAC (e_value=3e-134) Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1;; (*TAIR) AT4G09720.1 (e_value=4e-125) | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A | chr4:6133101-6134959 FORWARD LENGTH=206;; (*ITAG) Solyc04g072060.2.1 (e_value=2e-147) genomic_reference:SL2.40ch04 gene_region:56710003-56720195 transcript_region:SL2.40ch04:56710003..56720195- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-7a (AHRD V1 ***- C1C1X4_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00003717g0028.1 protein AED:0.30 eAED:0.30 QI:203|0.71|0.5|1|0.71|0.87|8|0|244; (*GB) gi|225438529|ref|XP_002279389.1| (e_value=6e-119) PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SJ12|ATP7_ARATH (e_value=3e-110) Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1;; (*TAIR) AT2G21870.1 (e_value=2e-111) | Symbols: MGP1 | copper ion binding;cobalt ion binding;zinc ion binding | chr2:9320456-9322618 REVERSE LENGTH=240;; (*ITAG) Solyc00g009020.2.1 (e_value=1e-162) genomic_reference:SL2.40ch00 gene_region:8742084-8746574 transcript_region:SL2.40ch00:8742084..8746574+ go_terms:GO:0008270,GO:0050897,GO:0005507 functional_description:"Mitochondrial ATP synthase (AHRD V1 ***- B6TLY8_MAIZE)"; GO:0008270,GO:0050897,GO:0005507 NbS00003717g0022.1 protein AED:0.30 eAED:0.31 QI:0|0.33|0.5|1|0.33|0.25|4|0|285; (*GB) gi|92429381|gb|ABE77148.1| (e_value=1e-69) putative WRKY transcription factor [Nicotiana tabacum];; (*ITAG) Solyc04g072070.2.1 (e_value=3e-24) genomic_reference:SL2.40ch04 gene_region:56722272-56725055 transcript_region:SL2.40ch04:56722272..56725055- go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 *-*- C9DI05_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00003717g0018.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=1e-20) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-22) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=3e-21) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=9e-23) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00003717g0007.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|531; (*GB) gi|310877800|gb|ADP37131.1| (e_value=0.0) putative hexose transporter [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT4G21480.1 (e_value=0.0) | Symbols: STP12 | sugar transporter protein 12 | chr4:11433320-11435284 REVERSE LENGTH=502;; (*ITAG) Solyc02g079220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00003717g0005.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|155 NbS00003717g0025.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0|3|0|277; (*GB) gi|296087304|emb|CBI33678.3| (e_value=3e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=1e-69) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT4G21480.1 (e_value=4e-68) | Symbols: STP12 | sugar transporter protein 12 | chr4:11433320-11435284 REVERSE LENGTH=502;; (*ITAG) Solyc02g079220.2.1 (e_value=2e-68) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00013612g0003.1 protein AED:0.23 eAED:0.23 QI:114|1|1|1|1|1|3|227|483; (*GB) gi|224099933|ref|XP_002334427.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GIU7|NORA_STAAR (e_value=2e-11) Quinolone resistance protein norA OS=Staphylococcus aureus (strain MRSA252) GN=norA PE=3 SV=1;; (*TAIR) AT5G10190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:3199205-3201140 FORWARD LENGTH=488;; (*ITAG) Solyc05g051900.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61442000-61445024 transcript_region:SL2.40ch05:61442000..61445024- go_terms:GO:0005351 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 *--- Q392L2_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00028542g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|0.8|1|0.6|5|0|149; (*GB) gi|358249295|ref|NP_001239770.1| (e_value=1e-84) uncharacterized protein LOC100810779 [Glycine max];; (*SWP) sp|Q55909|Y305_SYNY3 (e_value=2e-22) TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1;; (*TAIR) AT1G03260.1 (e_value=1e-76) | Symbols: | SNARE associated Golgi protein family | chr1:795678-798102 REVERSE LENGTH=274;; (*ITAG) Solyc01g080110.2.1 (e_value=4e-84) genomic_reference:SL2.40ch01 gene_region:71770948-71783098 transcript_region:SL2.40ch01:71770948..71783098- functional_description:"SNARE associated Golgi protein (AHRD V1 **-- C7LQY4_DESBD); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00006791g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|255551723|ref|XP_002516907.1| (e_value=2e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=9e-48) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G10625.1 (e_value=7e-46) | Symbols: | BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:3358934-3359272 FORWARD LENGTH=112;; (*ITAG) Solyc01g066970.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:67676728-67677333 transcript_region:SL2.40ch01:67676728..67677333- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00006791g0005.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|2|0|100; (*ITAG) Solyc10g047840.1.1 (e_value=1e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00006791g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|62 NbS00030924g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|75; (*GB) gi|356539846|ref|XP_003538404.1| (e_value=6e-39) PREDICTED: uncharacterized protein LOC100810219 [Glycine max];; (*TAIR) AT3G03341.1 (e_value=7e-38) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:790338-790556 REVERSE LENGTH=72;; (*ITAG) Solyc02g091390.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:47265725-47266148 transcript_region:SL2.40ch02:47265725..47266148- functional_description:"Little protein 1 (AHRD V1 ***- B4UWC1_ARAHY)"; NbS00002869g0009.1 protein AED:0.25 eAED:0.25 QI:333|0.87|0.77|1|0.37|0.44|9|0|216; (*GB) gi|224097190|ref|XP_002310869.1| (e_value=5e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZB2|PAS2_ARATH (e_value=2e-107) 3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana GN=PAS2 PE=1 SV=1;; (*TAIR) AT5G10480.1 (e_value=1e-108) | Symbols: PAS2, PEP | Protein-tyrosine phosphatase-like, PTPLA | chr5:3298047-3300048 REVERSE LENGTH=221;; (*ITAG) Solyc04g014370.2.1 (e_value=1e-133) genomic_reference:SL2.40ch04 gene_region:4624987-4631132 transcript_region:SL2.40ch04:4624987..4631132- go_terms:GO:0005515 functional_description:"Tyrosine phosphatase-like (AHRD V1 ***- Q5ZEI6_ORYSJ); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; GO:0005515 NbS00002869g0013.1 protein AED:0.05 eAED:0.06 QI:0|0|0.33|1|0.5|0.33|3|0|879; (*GB) gi|15144509|gb|AAK84476.1| (e_value=0.0) unknown [Solanum lycopersicum];; (*TAIR) AT1G09720.1 (e_value=0.0) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:3144438-3147303 REVERSE LENGTH=928;; (*ITAG) Solyc04g014380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4632442-4636309 transcript_region:SL2.40ch04:4632442..4636309+ functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00002869g0011.1 protein AED:0.14 eAED:0.14 QI:408|1|1|1|1|1|8|142|233; (*GB) gi|267850663|gb|ACY82403.1| (e_value=4e-126) MADS-box protein 20 [Petunia x hybrida];; (*SWP) sp|Q9FUY6|JOIN_SOLLC (e_value=2e-113) MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1;; (*TAIR) AT2G22540.1 (e_value=5e-114) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc11g010570.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3640857-3645766 transcript_region:SL2.40ch11:3640857..3645766+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00017039g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.33|1|0.5|0.33|3|0|308; (*GB) gi|255571750|ref|XP_002526818.1| (e_value=3e-97) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=1e-55) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G71930.1 (e_value=3e-83) | Symbols: VND7, ANAC030 | vascular related NAC-domain protein 7 | chr1:27076205-27077829 FORWARD LENGTH=324;; (*ITAG) Solyc06g065410.2.1 (e_value=1e-151) genomic_reference:SL2.40ch06 gene_region:37220630-37222822 transcript_region:SL2.40ch06:37220630..37222822+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MW79_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00052135g0004.1 protein AED:0.00 eAED:0.00 QI:164|1|1|1|0.5|0.33|3|166|111; (*GB) gi|302142214|emb|CBI19417.3| (e_value=2e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g088410.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62242882-62244590 transcript_region:SL2.40ch12:62242882..62244590- go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00003013g0005.1 protein AED:0.39 eAED:0.39 QI:0|1|0.83|1|1|0.83|6|0|207; (*GB) gi|255571107|ref|XP_002526504.1| (e_value=6e-147) protein with unknown function [Ricinus communis];; (*SWP) sp|O80501|RAH1B_ARATH (e_value=1e-144) Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1;; (*TAIR) AT2G44610.1 (e_value=9e-146) | Symbols: RAB6, ATRABH1B, ATRAB6A, RAB6A | Ras-related small GTP-binding family protein | chr2:18411778-18413883 REVERSE LENGTH=208;; (*ITAG) Solyc01g088560.2.1 (e_value=6e-150) genomic_reference:SL2.40ch01 gene_region:75096820-75102455 transcript_region:SL2.40ch01:75096820..75102455- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-6A (AHRD V1 ***- B6STE7_MAIZE); contains Interpro domain(s) IPR015600 Rab6-related "; GO:0003924 NbS00014474g0006.1 protein AED:0.02 eAED:0.05 QI:0|1|0|1|1|1|2|0|238; (*GB) gi|225455354|ref|XP_002272382.1| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100265885 [Vitis vinifera];; (*SWP) sp|Q9LVU8|RKD4_ARATH (e_value=8e-40) Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1;; (*TAIR) AT5G53040.1 (e_value=6e-41) | Symbols: | RWP-RK domain-containing protein | chr5:21506967-21507948 REVERSE LENGTH=256;; (*ITAG) Solyc03g083040.1.1 (e_value=7e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46419062-46421169 transcript_region:SL2.40ch03:46419062..46421169+ functional_description:"RWP-RK domain-containing transcription factor (AHRD V1 *-*- D8TJX2_VOLCA); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00014474g0003.1 protein AED:0.17 eAED:0.17 QI:181|0.33|0.75|0.75|0.66|0.75|4|396|84; (*GB) gi|224132742|ref|XP_002321398.1| (e_value=3e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT5G53045.1 (e_value=2e-27) | Symbols: | unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21508603-21509538 REVERSE LENGTH=96;; (*ITAG) Solyc03g083020.2.1 (e_value=6e-37) genomic_reference:SL2.40ch03 gene_region:46405573-46407538 transcript_region:SL2.40ch03:46405573..46407538+ functional_description:"Os02g0306125 protein (Fragment) (AHRD V1 ***- C7IYK6_ORYSJ); contains Interpro domain(s) IPR015419 Transcription factor Pcc1 "; NbS00014474g0007.1 protein AED:0.19 eAED:0.20 QI:538|0.45|0.58|0.83|0.54|0.5|12|397|399; (*GB) gi|357436453|ref|XP_003588502.1| (e_value=2e-108) Protein ABIL3 [Medicago truncatula];; (*SWP) sp|Q6NMC6|ABIL3_ARATH (e_value=3e-56) Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=2 SV=1;; (*TAIR) AT5G24310.1 (e_value=2e-57) | Symbols: ABIL3 | ABL interactor-like protein 3 | chr5:8274637-8276325 FORWARD LENGTH=321;; (*ITAG) Solyc03g083030.2.1 (e_value=4e-103) genomic_reference:SL2.40ch03 gene_region:46407770-46412248 transcript_region:SL2.40ch03:46407770..46412248- functional_description:"Protein ABIL1 (AHRD V1 **-- B6TQN2_MAIZE)"; NbS00018506g0005.1 protein AED:0.11 eAED:0.15 QI:69|0|0.5|1|0|0|2|344|321; (*GB) gi|225447687|ref|XP_002276552.1| (e_value=1e-167) PREDICTED: uncharacterized GPI-anchored protein At4g28100-like [Vitis vinifera];; (*SWP) sp|Q9SUC9|UGPI7_ARATH (e_value=5e-137) Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1;; (*TAIR) AT4G28100.1 (e_value=4e-138) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965300-13966697 REVERSE LENGTH=304;; (*ITAG) Solyc07g054850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60355806-60357323 transcript_region:SL2.40ch07:60355806..60357323+ functional_description:"Uncharacterized GPI-anchored protein At4g28100 (AHRD V1 ***- UGPI7_ARATH)"; NbS00018580g0011.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|0.33|0.75|4|0|162; (*GB) gi|255547868|ref|XP_002514991.1| (e_value=7e-64) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O32107|YUID_BACSU (e_value=2e-19) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT1G24350.3 (e_value=8e-64) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr1:8639098-8640313 REVERSE LENGTH=186;; (*ITAG) Solyc05g014700.2.1 (e_value=4e-75) genomic_reference:SL2.40ch05 gene_region:8827126-8829797 transcript_region:SL2.40ch05:8827126..8829797+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 **-- B6TSR4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00018580g0001.1 protein AED:0.05 eAED:0.05 QI:1567|0.94|0.94|1|0.66|0.73|19|853|508; (*GB) gi|225425865|ref|XP_002266225.1| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Vitis vinifera];; (*SWP) sp|Q0WVW7|RQL5_ARATH (e_value=0.0) ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2;; (*TAIR) AT1G27880.1 (e_value=0.0) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:9708940-9713901 FORWARD LENGTH=911;; (*ITAG) Solyc05g014690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8814439-8825664 transcript_region:SL2.40ch05:8814439..8825664+ go_terms:GO:0000739,GO:0005524,GO:0000405 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-** A0Y2E9_9GAMM); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0000739,GO:0005524,GO:0000405 NbS00018580g0012.1 protein AED:0.16 eAED:0.69 QI:0|0|0|1|0|0.5|2|0|222; (*ITAG) Solyc12g039110.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37777361-37778103 transcript_region:SL2.40ch12:37777361..37778103+ functional_description:"Polyprotein (AHRD V1 ***- Q9SXQ1_ARATH)"; NbS00008919g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|0.66|1|0.5|1|3|0|309; (*GB) gi|359482129|ref|XP_002276836.2| (e_value=2e-86) PREDICTED: uncharacterized protein LOC100260668 [Vitis vinifera];; (*SWP) sp|B2G6W4|DNAJ_LACRJ (e_value=2e-16) Chaperone protein DnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G18140.1 (e_value=1e-63) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:5998235-5999699 FORWARD LENGTH=333;; (*ITAG) Solyc10g078560.1.1 (e_value=5e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59673523-59677019 transcript_region:SL2.40ch10:59673523..59677019- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A2SS06_METLZ); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00018569g0008.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.87|0.28|0.25|8|0|770; (*GB) gi|356557837|ref|XP_003547217.1| (e_value=9e-89) PREDICTED: uncharacterized protein LOC100817232 [Glycine max];; (*TAIR) AT5G18750.1 (e_value=3e-44) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:6255177-6257831 FORWARD LENGTH=884;; (*ITAG) Solyc01g067780.1.1 (e_value=5e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00018569g0007.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|174; (*GB) gi|356557837|ref|XP_003547217.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100817232 [Glycine max];; (*TAIR) AT3G06340.3 (e_value=9e-38) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920607-1922628 REVERSE LENGTH=673;; (*ITAG) Solyc01g067780.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00013231g0014.1 protein AED:0.14 eAED:0.14 QI:157|1|1|1|1|1|9|347|447; (*GB) gi|225450981|ref|XP_002284787.1| (e_value=0.0) PREDICTED: seryl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|O81983|SYS_HELAN (e_value=0.0) Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1;; (*TAIR) AT5G27470.1 (e_value=0.0) | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=451;; (*ITAG) Solyc01g098880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81019466-81025335 transcript_region:SL2.40ch01:81019466..81025335+ go_terms:GO:0005737,GO:0000166 functional_description:"Seryl-tRNA synthetase (AHRD V1 ***- D7M641_ARALY); contains Interpro domain(s) IPR002317 Seryl-tRNA synthetase, class IIa "; GO:0005737,GO:0000166 NbS00013231g0016.1 protein AED:0.26 eAED:0.26 QI:242|1|1|1|1|1|5|674|317; (*GB) gi|150036255|gb|ABR67418.1| (e_value=3e-144) mitochondrial FAD carrier [Cucumis melo subsp. melo];; (*SWP) sp|Q06497|ANT1_YEAST (e_value=3e-16) Peroxisomal adenine nucleotide transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ANT1 PE=1 SV=1;; (*TAIR) AT3G05290.1 (e_value=3e-139) | Symbols: PNC1 | peroxisomal adenine nucleotide carrier 1 | chr3:1506129-1507614 REVERSE LENGTH=322;; (*ITAG) Solyc01g098910.2.1 (e_value=1e-159) genomic_reference:SL2.40ch01 gene_region:81036549-81040755 transcript_region:SL2.40ch01:81036549..81040755- go_terms:GO:0015217,GO:0005347 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P0Z3_COCP7); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015217,GO:0005347 NbS00013231g0015.1 protein AED:0.34 eAED:0.34 QI:193|1|0.83|1|1|1|6|0|280; (*GB) gi|255542616|ref|XP_002512371.1| (e_value=7e-156) Protein YIPF1, putative [Ricinus communis];; (*SWP) sp|Q54TS4|YIPF1_DICDI (e_value=1e-35) Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1;; (*TAIR) AT5G27490.1 (e_value=3e-150) | Symbols: | Integral membrane Yip1 family protein | chr5:9703130-9704653 REVERSE LENGTH=282;; (*ITAG) Solyc01g098900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81028899-81034087 transcript_region:SL2.40ch01:81028899..81034087- go_terms:GO:0017137 functional_description:"Yip1 domain-containing protein (AHRD V1 **-- D3BM06_POLPA); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00005251g0113.1 protein AED:0.05 eAED:0.05 QI:78|0.6|0.5|1|0.4|0.5|6|138|299 NbS00005251g0103.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|301 NbS00005251g0111.1 protein AED:0.31 eAED:0.34 QI:201|1|0.5|1|1|1|2|0|206 NbS00005251g0104.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.5|1|1|1|4|0|434 NbS00030000g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|0.75|0.8|5|209|754; (*GB) gi|225428076|ref|XP_002278006.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243514 [Vitis vinifera];; (*TAIR) AT1G77500.1 (e_value=2e-58) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr1:29121753-29124937 FORWARD LENGTH=879;; (*ITAG) Solyc01g111740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89688498-89692535 transcript_region:SL2.40ch01:89688498..89692535+ functional_description:"Bzip-like transcription factor-like (AHRD V1 ***- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00030000g0009.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0.33|1|0.5|0.33|3|0|298; (*GB) gi|225428078|ref|XP_002278026.1| (e_value=3e-124) PREDICTED: uncharacterized protein LOC100265837 [Vitis vinifera];; (*TAIR) AT2G20920.1 (e_value=3e-97) | Symbols: | Protein of unknown function (DUF3353) | chr2:8998728-8999789 FORWARD LENGTH=287;; (*ITAG) Solyc01g111750.2.1 (e_value=5e-167) genomic_reference:SL2.40ch01 gene_region:89692775-89695958 transcript_region:SL2.40ch01:89692775..89695958- functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 *--- B7K9K5_CYAP7)"; NbS00034066g0005.1 protein AED:0.23 eAED:0.23 QI:272|1|1|1|0|0|3|177|193; (*GB) gi|225449557|ref|XP_002283841.1| (e_value=2e-81) PREDICTED: CASP-like protein POPTRDRAFT_822486 [Vitis vinifera];; (*SWP) sp|B9HTK2|CSPLI_POPTR (e_value=6e-76) CASP-like protein POPTRDRAFT_822486 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1;; (*TAIR) AT3G55390.1 (e_value=3e-63) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:20534785-20535620 FORWARD LENGTH=194;; (*ITAG) Solyc04g011420.2.1 (e_value=5e-109) genomic_reference:SL2.40ch04 gene_region:3881797-3883525 transcript_region:SL2.40ch04:3881797..3883525- functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_POPTR); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00034066g0006.1 protein AED:0.25 eAED:0.25 QI:189|1|1|1|0.33|0.57|7|179|206; (*GB) gi|81076243|gb|ABB55390.1| (e_value=2e-84) ubiquitin-conjugating enzyme E2 7-like [Solanum tuberosum];; (*SWP) sp|Q42540|UBC7_ARATH (e_value=2e-82) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1;; (*TAIR) AT5G59300.1 (e_value=6e-83) | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919868-23921304 REVERSE LENGTH=203;; (*ITAG) Solyc05g054540.2.1 (e_value=7e-88) genomic_reference:SL2.40ch05 gene_region:63586295-63589962 transcript_region:SL2.40ch05:63586295..63589962+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00006514g0001.1 protein AED:0.26 eAED:0.37 QI:0|0|0|1|1|1|3|0|255; (*ITAG) Solyc03g121080.2.1 (e_value=8e-32) genomic_reference:SL2.40ch03 gene_region:63362764-63365375 transcript_region:SL2.40ch03:63362764..63365375+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006514g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|184; (*GB) gi|147790298|emb|CAN69977.1| (e_value=1e-39) hypothetical protein VITISV_011279 [Vitis vinifera];; (*TAIR) AT5G56550.1 (e_value=7e-21) | Symbols: OXS3, ATOXS3 | oxidative stress 3 | chr5:22895847-22896502 REVERSE LENGTH=172;; (*ITAG) Solyc03g121090.2.1 (e_value=8e-55) genomic_reference:SL2.40ch03 gene_region:63365329-63366373 transcript_region:SL2.40ch03:63365329..63366373- functional_description:"Cold induced protein-like (AHRD V1 **-- Q94JH8_ORYSJ)"; NbS00047319g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|225452562|ref|XP_002280547.1| (e_value=3e-104) PREDICTED: peroxidase 31-like [Vitis vinifera];; (*SWP) sp|Q9FL16|PER63_ARATH (e_value=1e-97) Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1;; (*TAIR) AT5G40150.1 (e_value=8e-99) | Symbols: | Peroxidase superfamily protein | chr5:16059750-16060736 REVERSE LENGTH=328;; (*ITAG) Solyc02g087190.1.1 (e_value=6e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44243351-44244337 transcript_region:SL2.40ch02:44243351..44244337+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 65 (AHRD V1 **** B6TYF5_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00060720g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|609; (*GB) gi|224127864|ref|XP_002329196.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=0.0) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc03g095490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50063905-50066754 transcript_region:SL2.40ch03:50063905..50066754+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00004711g0004.1 protein AED:0.03 eAED:0.04 QI:0|1|0.6|1|1|1|5|0|330; (*GB) gi|225453146|ref|XP_002272414.1| (e_value=9e-63) PREDICTED: putative transcription factor bHLH086 [Vitis vinifera];; (*SWP) sp|Q9C707|BH083_ARATH (e_value=2e-52) Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1;; (*TAIR) AT1G66470.1 (e_value=2e-53) | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795326-24796598 FORWARD LENGTH=298;; (*ITAG) Solyc02g091440.1.1 (e_value=3e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47312026-47313724 transcript_region:SL2.40ch02:47312026..47313724- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00009050g0012.1 protein AED:0.21 eAED:0.43 QI:0|0|0|0.66|0.5|0.66|3|0|218 NbS00009050g0013.1 protein AED:0.01 eAED:0.06 QI:0|1|0.33|1|1|0.66|3|0|450; (*GB) gi|225444177|ref|XP_002269170.1| (e_value=3e-124) PREDICTED: probable WRKY transcription factor 14-like [Vitis vinifera];; (*SWP) sp|Q9SA80|WRK14_ARATH (e_value=5e-84) Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2;; (*TAIR) AT1G30650.1 (e_value=4e-85) | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-binding protein 14 | chr1:10868612-10870973 FORWARD LENGTH=430;; (*ITAG) Solyc02g021680.2.1 (e_value=1e-143) genomic_reference:SL2.40ch02 gene_region:14206227-14209227 transcript_region:SL2.40ch02:14206227..14209227+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 37 (AHRD V1 *-*- Q6IEP4_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00014560g0005.1 protein AED:0.15 eAED:0.18 QI:0|0.52|0.33|1|0.35|0.38|18|0|587; (*GB) gi|359483552|ref|XP_002264180.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Vitis vinifera];; (*SWP) sp|C0LGE0|Y1765_ARATH (e_value=2e-158) Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1;; (*TAIR) AT1G07650.2 (e_value=1e-160) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1020;; (*ITAG) Solyc02g071860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35784232-35794056 transcript_region:SL2.40ch02:35784232..35794056- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00017716g0005.1 protein AED:0.08 eAED:0.08 QI:57|1|0.66|1|0|0|3|0|282; (*GB) gi|296082884|emb|CBI22185.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q00466|HAT7_ARATH (e_value=1e-59) Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4;; (*TAIR) AT5G15150.1 (e_value=1e-60) | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 | chr5:4913951-4915609 REVERSE LENGTH=314;; (*ITAG) Solyc02g067410.1.1 (e_value=8e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32180008-32182041 transcript_region:SL2.40ch02:32180008..32182041+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00017716g0007.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|81 NbS00010077g0004.1 protein AED:0.02 eAED:0.02 QI:882|1|0.75|1|0|0|4|624|492; (*GB) gi|224087429|ref|XP_002308163.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|O80933|SCL9_ARATH (e_value=0.0) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc09g010920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4259085-4261370 transcript_region:SL2.40ch09:4259085..4261370+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HBM9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00010077g0022.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.4|0.5|6|0|373; (*GB) gi|225440378|ref|XP_002270642.1| (e_value=5e-147) PREDICTED: inactive rhomboid protein 1 [Vitis vinifera];; (*TAIR) AT2G29050.1 (e_value=2e-130) | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12478245-12480121 FORWARD LENGTH=389;; (*ITAG) Solyc09g010880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4210208-4220467 transcript_region:SL2.40ch09:4210208..4220467- go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7LUM3_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00010077g0018.1 protein AED:0.18 eAED:0.18 QI:127|0.78|0.8|0.93|0.57|0.73|15|811|829; (*GB) gi|225440376|ref|XP_002266667.1| (e_value=0.0) PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis vinifera];; (*SWP) sp|P73177|RN2H_SYNY3 (e_value=3e-101) Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1;; (*TAIR) AT5G02250.1 (e_value=0.0) | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonuclease II/R family protein | chr5:454902-459063 FORWARD LENGTH=803;; (*ITAG) Solyc09g010870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4200163-4209478 transcript_region:SL2.40ch09:4200163..4209478- go_terms:GO:0000175 functional_description:"Exoribonuclease R/ribonuclease II (AHRD V1 **-* A5GLA4_SYNPW); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00010077g0020.1 protein AED:0.44 eAED:0.45 QI:0|0.66|0.5|1|1|1|4|0|200; (*GB) gi|255580317|ref|XP_002530987.1| (e_value=1e-114) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80934|Y2766_ARATH (e_value=5e-111) Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2;; (*TAIR) AT2G37660.1 (e_value=4e-112) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:15795481-15796977 REVERSE LENGTH=325;; (*ITAG) Solyc09g010930.2.1 (e_value=1e-120) genomic_reference:SL2.40ch09 gene_region:4264025-4269432 transcript_region:SL2.40ch09:4264025..4269432- go_terms:GO:0005507 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- B6T962_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005507 NbS00013338g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.4|1|0.75|0.6|5|0|452; (*GB) gi|75221017|sp|Q40593.1|VDE_TOBAC (e_value=0.0) RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40593|VDE_TOBAC (e_value=0.0) Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1;; (*TAIR) AT1G08550.2 (e_value=2e-129) | Symbols: NPQ1, AVDE1 | non-photochemical quenching 1 | chr1:2707462-2709387 FORWARD LENGTH=462;; (*ITAG) Solyc04g050930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48132067-48135623 transcript_region:SL2.40ch04:48132067..48135623- go_terms:GO:0046422 functional_description:"Violaxanthin de-epoxidase"; GO:0046422 NbS00013338g0006.1 protein AED:0.34 eAED:0.46 QI:7|0|0|0.5|1|0.75|4|0|145; (*GB) gi|359476539|ref|XP_003631855.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100252715 [Vitis vinifera];; (*TAIR) AT3G54310.1 (e_value=7e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38430.1); Has 44 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20111153-20112944 REVERSE LENGTH=358;; (*ITAG) Solyc04g050920.2.1 (e_value=4e-30) genomic_reference:SL2.40ch04 gene_region:48128774-48132067 transcript_region:SL2.40ch04:48128774..48132067+ go_terms:GO:0006810 functional_description:"Os02g0504100 protein (Fragment) (AHRD V1 *-*- Q0E114_ORYSJ)"; GO:0006810 NbS00015469g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|0.5|0.33|3|392|410; (*GB) gi|359493995|ref|XP_002285537.2| (e_value=2e-132) PREDICTED: BES1/BZR1 homolog protein 4-like [Vitis vinifera];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=9e-106) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=7e-107) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc07g062260.2.1 (e_value=6e-162) genomic_reference:SL2.40ch07 gene_region:62262206-62265340 transcript_region:SL2.40ch07:62262206..62265340- go_terms:GO:0030528 functional_description:"BES1/BZR1 homolog protein 4 (AHRD V1 **-- BEH4_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00015469g0003.1 protein AED:0.53 eAED:0.53 QI:111|0.66|0.57|0.85|0.66|0.57|7|0|192 NbS00020597g0009.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|0.5|0.66|3|0|155; (*GB) gi|359485747|ref|XP_002265916.2| (e_value=3e-63) PREDICTED: uncharacterized protein LOC100241703 [Vitis vinifera];; (*TAIR) AT5G64180.1 (e_value=4e-59) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25677163-25678204 FORWARD LENGTH=158;; (*ITAG) Solyc01g105130.2.1 (e_value=1e-85) genomic_reference:SL2.40ch01 gene_region:85162028-85165518 transcript_region:SL2.40ch01:85162028..85165518+ functional_description:"SKIP interacting protein 15 (AHRD V1 ***- B8Q8A1_ORYSI)"; NbS00020597g0002.1 protein AED:0.42 eAED:0.42 QI:129|0.83|0.71|1|1|1|7|0|250; (*GB) gi|118484490|gb|ABK94120.1| (e_value=1e-66) unknown [Populus trichocarpa];; (*SWP) sp|P30352|SRSF2_CHICK (e_value=2e-25) Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1;; (*TAIR) AT5G64200.2 (e_value=4e-66) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc01g105140.2.1 (e_value=8e-73) genomic_reference:SL2.40ch01 gene_region:85168075-85173892 transcript_region:SL2.40ch01:85168075..85173892- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00028713g0006.1 protein AED:0.13 eAED:0.13 QI:24|0.88|0.7|1|0.77|0.8|10|878|1202; (*GB) gi|297742796|emb|CBI35476.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q80XC6|CN102_MOUSE (e_value=8e-54) UPF0614 protein C14orf102 homolog OS=Mus musculus PE=2 SV=3;; (*TAIR) AT3G17740.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr3:6068003-6072814 REVERSE LENGTH=1149;; (*ITAG) Solyc03g098160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53935244-53947764 transcript_region:SL2.40ch03:53935244..53947764+ go_terms:GO:0005975,GO:0005622 functional_description:"Chromosome 14 open reading frame 102 (AHRD V1 *--- Q4G0A7_HUMAN); contains Interpro domain(s) IPR013633 Protein of unknown function DUF1740 "; GO:0005975,GO:0005622 NbS00028713g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.33|0.66|1|1|3|9|68; (*ITAG) Solyc03g098170.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:53948518-53955412 transcript_region:SL2.40ch03:53948518..53955412- go_terms:GO:0043014 functional_description:"Tubulin folding cofactor B (AHRD V1 **-* D7L8W6_ARALY); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; GO:0043014 NbS00017942g0008.1 protein AED:0.27 eAED:0.34 QI:46|0|0|0.83|0.6|0.5|6|0|386; (*GB) gi|145839451|gb|ABP96804.1| (e_value=2e-115) receptor-like protein kinase [Capsicum annuum];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=5e-81) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=2e-87) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc05g009090.1.1 (e_value=2e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3230564-3232618 transcript_region:SL2.40ch05:3230564..3232618+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017942g0009.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.33|0.83|0.6|0.83|6|0|673; (*GB) gi|297734240|emb|CBI15487.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc12g036330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30763406-30765762 transcript_region:SL2.40ch12:30763406..30765762+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00026402g0005.1 protein AED:0.39 eAED:0.44 QI:44|0|0.14|0.42|0.33|0.42|7|0|409; (*GB) gi|66737320|gb|AAY54606.1| (e_value=3e-108) NRG1 [Nicotiana benthamiana];; (*SWP) sp|Q9FKZ1|DRL42_ARATH (e_value=2e-39) Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=2 SV=1;; (*TAIR) AT5G66900.1 (e_value=1e-40) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:26714931-26717757 REVERSE LENGTH=809;; (*ITAG) Solyc02g090380.2.1 (e_value=8e-106) genomic_reference:SL2.40ch02 gene_region:46515185-46519334 transcript_region:SL2.40ch02:46515185..46519334+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00047802g0002.1 protein AED:0.11 eAED:0.11 QI:863|1|0.88|1|0.5|0.55|9|444|575; (*GB) gi|225437237|ref|XP_002282102.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera];; (*SWP) sp|Q9M9Y5|GAUT6_ARATH (e_value=0.0) Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1;; (*TAIR) AT1G06780.1 (e_value=0.0) | Symbols: GAUT6 | galacturonosyltransferase 6 | chr1:2083689-2086853 FORWARD LENGTH=589;; (*ITAG) Solyc12g010200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3315323-3320618 transcript_region:SL2.40ch12:3315323..3320618+ go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00047802g0009.1 protein AED:0.24 eAED:0.24 QI:205|1|1|1|1|1|7|316|286; (*GB) gi|225424454|ref|XP_002281633.1| (e_value=5e-134) PREDICTED: anthranilate synthase component II-like [Vitis vinifera];; (*SWP) sp|P48261|TRPG_CYAPA (e_value=5e-71) Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1;; (*TAIR) AT1G25220.1 (e_value=3e-131) | Symbols: ASB1, TRP4, WEI7 | anthranilate synthase beta subunit 1 | chr1:8837430-8839478 REVERSE LENGTH=276;; (*ITAG) Solyc12g010180.1.1 (e_value=5e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3296799-3307363 transcript_region:SL2.40ch12:3296799..3307363- go_terms:GO:0008152,GO:0006541,GO:0009058,GO:0003824 functional_description:"Anthranilate synthase (AHRD V1 ***- A1KAT4_AZOSB); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0008152,GO:0006541,GO:0009058,GO:0003824 NbS00011517g0003.1 protein AED:0.02 eAED:0.02 QI:83|1|1|1|0.5|0.33|3|21|241; (*GB) gi|224126823|ref|XP_002319935.1| (e_value=6e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=8e-52) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=5e-55) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc07g053240.2.1 (e_value=4e-101) genomic_reference:SL2.40ch07 gene_region:59033588-59034689 transcript_region:SL2.40ch07:59033588..59034689+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00019438g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|125; (*GB) gi|147777294|emb|CAN73462.1| (e_value=4e-39) hypothetical protein VITISV_033907 [Vitis vinifera];; (*SWP) sp|P36687|GLNA_PYRWO (e_value=8e-17) Glutamine synthetase 1 OS=Pyrococcus woesei GN=glnA PE=3 SV=1;; (*TAIR) AT3G53180.1 (e_value=9e-33) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc01g056450.1.1 (e_value=3e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47074232-47077183 transcript_region:SL2.40ch01:47074232..47077183+ go_terms:GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0006807,GO:0003824 NbS00023338g0002.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0.25|4|0|335; (*GB) gi|225452482|ref|XP_002278739.1| (e_value=7e-93) PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-45) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G14780.1 (e_value=1e-91) | Symbols: | Protein kinase superfamily protein | chr4:8492989-8494480 FORWARD LENGTH=364;; (*ITAG) Solyc03g114210.2.1 (e_value=6e-91) genomic_reference:SL2.40ch03 gene_region:58256826-58261183 transcript_region:SL2.40ch03:58256826..58261183- go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00020963g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.57|0.4|0.93|1|1|15|0|639; (*GB) gi|359484258|ref|XP_002276918.2| (e_value=0.0) PREDICTED: beta-galactosidase 7-like [Vitis vinifera];; (*SWP) sp|Q9C6W4|BGA15_ARATH (e_value=0.0) Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1;; (*TAIR) AT1G31740.1 (e_value=0.0) | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908 REVERSE LENGTH=786;; (*ITAG) Solyc07g042220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52608232-52612572 transcript_region:SL2.40ch07:52608232..52612572+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9RR68_RICCO); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00020963g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|125; (*GB) gi|225444653|ref|XP_002277621.1| (e_value=1e-31) PREDICTED: ethylene-responsive transcription factor ERF017 [Vitis vinifera];; (*SWP) sp|Q9C591|ERF16_ARATH (e_value=3e-25) Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1;; (*TAIR) AT5G21960.1 (e_value=2e-26) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:7258560-7259210 REVERSE LENGTH=216;; (*ITAG) Solyc07g042230.1.1 (e_value=1e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:52615428-52615931 transcript_region:SL2.40ch07:52615428..52615931- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00023194g0005.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.2|1|0.5|0.4|5|0|295; (*GB) gi|225435070|ref|XP_002284400.1| (e_value=7e-81) PREDICTED: transcription factor MYB59-like [Vitis vinifera];; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=3e-69) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G46130.1 (e_value=2e-70) | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain protein 48 | chr3:16945433-16946376 FORWARD LENGTH=256;; (*ITAG) Solyc06g005330.2.1 (e_value=3e-104) genomic_reference:SL2.40ch06 gene_region:351706-352825 transcript_region:SL2.40ch06:351706..352825- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00019421g0014.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|0.5|2|0|282; (*GB) gi|255570037|ref|XP_002525981.1| (e_value=3e-110) DUF26 domain-containing protein 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9ZU94|CRR12_ARATH (e_value=6e-94) Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2;; (*TAIR) AT2G01660.1 (e_value=5e-95) | Symbols: PDLP6 | plasmodesmata-located protein 6 | chr2:290973-292496 REVERSE LENGTH=288;; (*ITAG) Solyc04g007950.2.1 (e_value=2e-159) genomic_reference:SL2.40ch04 gene_region:1595372-1599582 transcript_region:SL2.40ch04:1595372..1599582- go_terms:GO:0005515 functional_description:"Cysteine-rich repeat secretory protein 12 (AHRD V1 ***- CRR12_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0005515 NbS00019421g0009.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|225424349|ref|XP_002284875.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100252692 [Vitis vinifera];; (*TAIR) AT5G17190.1 (e_value=2e-45) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5652310-5652702 FORWARD LENGTH=130;; (*ITAG) Solyc04g007920.1.1 (e_value=9e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1584393-1584788 transcript_region:SL2.40ch04:1584393..1584788- go_terms:GO:0005515 functional_description:"Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)"; GO:0005515 NbS00019421g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc10g049530.1.1 (e_value=6e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00019421g0011.1 protein AED:0.66 eAED:0.70 QI:0|0|0|0.5|1|1|2|0|78 NbS00019421g0015.1 protein AED:0.44 eAED:0.65 QI:44|0|0|1|0|0|2|0|46 NbS00018922g0020.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.5|0.66|0.5|4|0|263; (*GB) gi|224106281|ref|XP_002314112.1| (e_value=1e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=3e-72) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT2G29700.1 (e_value=2e-73) | Symbols: ATPH1, PH1 | pleckstrin homologue 1 | chr2:12697571-12698008 FORWARD LENGTH=145;; (*ITAG) Solyc06g076890.1.1 (e_value=3e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44169059-44169493 transcript_region:SL2.40ch06:44169059..44169493+ go_terms:GO:0035091 functional_description:"Pleckstrin homology domain-containing protein 1 (AHRD V1 **-- B6UCM9_MAIZE); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00018922g0001.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|225434622|ref|XP_002279360.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82380|PP175_ARATH (e_value=3e-174) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=3e-175) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00018922g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|330; (*GB) gi|225434622|ref|XP_002279360.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82380|PP175_ARATH (e_value=4e-167) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=3e-168) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00018922g0017.1 protein AED:0.55 eAED:0.68 QI:83|0|0|0.5|0.6|0.66|6|0|114 NbS00018922g0021.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|0.75|0.33|0|4|0|1132; (*GB) gi|147853780|emb|CAN83822.1| (e_value=0.0) hypothetical protein VITISV_030954 [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc06g076910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44176311-44180041 transcript_region:SL2.40ch06:44176311..44180041- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00018922g0019.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0|2|0|98 NbS00034743g0004.1 protein AED:0.18 eAED:0.19 QI:284|0.6|0.63|0.90|0.4|0.45|11|0|677; (*GB) gi|359475361|ref|XP_002282345.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At1g49730-like [Vitis vinifera];; (*SWP) sp|Q9FX99|Y1497_ARATH (e_value=0.0) Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana GN=At1g49730 PE=1 SV=1;; (*TAIR) AT3G19300.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:6690242-6693210 REVERSE LENGTH=663;; (*ITAG) Solyc01g108000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87146335-87150786 transcript_region:SL2.40ch01:87146335..87150786+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM68_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00043249g0002.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|221; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-92) hypothetical protein [Nicotiana tabacum]; NbS00016087g0015.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|1|0.33|0.25|4|0|254; (*GB) gi|237664619|gb|ACR09748.1| (e_value=1e-72) DIV3B protein [Heptacodium miconioides];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=9e-16) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=4e-61) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc10g076820.1.1 (e_value=6e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59113467-59114847 transcript_region:SL2.40ch10:59113467..59114847+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00016087g0001.1 protein AED:0.44 eAED:0.54 QI:0|0|0|1|1|1|3|0|138; (*GB) gi|356496152|ref|XP_003516934.1| (e_value=1e-13) PREDICTED: ataxin-3 homolog [Glycine max];; (*ITAG) Solyc10g086770.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64816627-64817491 transcript_region:SL2.40ch10:64816627..64817491- functional_description:"Ataxin 3 variant ref (Fragment) (AHRD V1 *-*- D3VVG8_HUMAN); contains Interpro domain(s) IPR006155 Machado-Joseph disease protein MJD "; NbS00016087g0017.1 protein AED:0.04 eAED:0.04 QI:1019|0.66|0.75|1|0.66|0.5|4|121|171; (*GB) gi|1685091|gb|AAC49538.1| (e_value=2e-106) diphenol oxidase, partial [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=1e-95) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=1e-96) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g076830.1.1 (e_value=4e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59123721-59126117 transcript_region:SL2.40ch10:59123721..59126117- go_terms:GO:0048046,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00016087g0008.1 protein AED:0.35 eAED:0.40 QI:0|0|0|0.6|1|1|5|0|272; (*GB) gi|77999303|gb|ABB16998.1| (e_value=1e-155) proteasome-like protein alpha subunit [Solanum tuberosum];; (*SWP) sp|P52427|PSA4_SPIOL (e_value=2e-155) Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1;; (*TAIR) AT3G22110.1 (e_value=5e-153) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=2e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00017145g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.66|1|0.6|0.33|6|0|514; (*GB) gi|332801235|gb|AEE99259.1| (e_value=0.0) anthocyanin 1-like protein [Nicotiana sylvestris];; (*SWP) sp|Q9FN69|GL3_ARATH (e_value=2e-42) Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1;; (*TAIR) AT5G41315.1 (e_value=2e-43) | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:16529457-16532866 FORWARD LENGTH=637;; (*ITAG) Solyc09g065100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58546874-58554328 transcript_region:SL2.40ch09:58546874..58554328+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005515,GO:0003700 NbS00017145g0008.1 protein AED:0.41 eAED:0.57 QI:0|1|0.5|1|1|1|2|0|119; (*GB) gi|332801235|gb|AEE99259.1| (e_value=5e-49) anthocyanin 1-like protein [Nicotiana sylvestris];; (*SWP) sp|Q9FT81|TT8_ARATH (e_value=3e-35) Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2;; (*TAIR) AT4G09820.1 (e_value=2e-36) | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:6182067-6186261 FORWARD LENGTH=518;; (*ITAG) Solyc09g065100.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58546874-58554328 transcript_region:SL2.40ch09:58546874..58554328+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005515,GO:0003700 NbS00042808g0003.1 protein AED:0.24 eAED:0.16 QI:0|1|0.2|1|0.5|0.8|5|726|262; (*GB) gi|225448976|ref|XP_002270186.1| (e_value=6e-65) PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform 1 [Vitis vinifera];; (*TAIR) AT2G39140.1 (e_value=7e-56) | Symbols: SVR1 | pseudouridine synthase family protein | chr2:16330238-16333153 FORWARD LENGTH=410;; (*ITAG) Solyc11g008360.1.1 (e_value=4e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2570463-2575364 transcript_region:SL2.40ch11:2570463..2575364- go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7LCF4_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009451,GO:0003723 NbS00042808g0004.1 protein AED:0.67 eAED:0.67 QI:4|0|0|0.66|1|1|3|158|11 NbS00027034g0015.1 protein AED:0.26 eAED:0.26 QI:67|0.66|0.75|0.75|0.33|0|4|0|282; (*GB) gi|225446839|ref|XP_002283630.1| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100245557 [Vitis vinifera];; (*TAIR) AT1G06510.1 (e_value=4e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). | chr1:1992389-1993583 FORWARD LENGTH=277;; (*ITAG) Solyc10g007730.2.1 (e_value=4e-144) genomic_reference:SL2.40ch10 gene_region:1977115-1980047 transcript_region:SL2.40ch10:1977115..1980047+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027034g0013.1 protein AED:0.10 eAED:0.14 QI:0|0|0|1|0.33|0.5|4|0|786; (*GB) gi|225463201|ref|XP_002267837.1| (e_value=0.0) PREDICTED: PHD finger protein At1g33420 [Vitis vinifera];; (*SWP) sp|Q9C810|Y1342_ARATH (e_value=0.0) PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1;; (*TAIR) AT1G33420.1 (e_value=0.0) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:12121063-12123346 REVERSE LENGTH=697;; (*ITAG) Solyc04g007270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:983517-987368 transcript_region:SL2.40ch04:983517..987368+ go_terms:GO:0003677 functional_description:"PHD finger family protein (AHRD V1 **-- D7KII6_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00027034g0014.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.57|1|0.66|0.57|7|0|439; (*GB) gi|9972364|gb|AAG10614.1|AC008030_14 (e_value=3e-139) Unknown protein [Arabidopsis thaliana];; (*TAIR) AT1G29820.2 (e_value=1e-126) | Symbols: | Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540;; (*ITAG) Solyc10g007740.2.1 (e_value=1e-177) genomic_reference:SL2.40ch10 gene_region:1981130-1985036 transcript_region:SL2.40ch10:1981130..1985036- go_terms:GO:0051103 functional_description:"Mg2+ transporter protein CorA family protein (AHRD V1 *-*- D0D0F5_9RHOB)"; GO:0051103 NbS00060777g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|121; (*GB) gi|297737072|emb|CBI26273.3| (e_value=2e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G22540.1 (e_value=1e-39) | Symbols: | Protein of unknown function (DUF1677) | chr3:7984233-7984565 REVERSE LENGTH=110;; (*ITAG) Solyc09g082190.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63394455-63394805 transcript_region:SL2.40ch09:63394455..63394805- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00058792g0004.1 protein AED:0.00 eAED:0.00 QI:41|1|0.5|1|1|1|2|0|450; (*GB) gi|225424981|ref|XP_002266304.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 82A1 [Vitis vinifera];; (*SWP) sp|Q9LHJ2|U82A1_ARATH (e_value=3e-154) UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana GN=UGT82A1 PE=2 SV=1;; (*TAIR) AT3G22250.1 (e_value=2e-155) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7867806-7870053 FORWARD LENGTH=461;; (*ITAG) Solyc12g006430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00020048g0016.1 protein AED:0.09 eAED:0.09 QI:201|0.87|0.77|1|0.5|0.55|9|0|759; (*GB) gi|225456469|ref|XP_002280806.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242176 [Vitis vinifera];; (*SWP) sp|Q75QN6|PHS1_ARATH (e_value=0.0) Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1;; (*TAIR) AT5G23720.3 (e_value=0.0) | Symbols: PHS1 | dual specificity protein phosphatase family protein | chr5:7998506-8002594 FORWARD LENGTH=920;; (*ITAG) Solyc03g118350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61305752-61313365 transcript_region:SL2.40ch03:61305752..61313365- go_terms:GO:0005515,GO:0004721 functional_description:"Dual specificity protein phosphatase (AHRD V1 *-** D7L3D2_ARALY); contains Interpro domain(s) IPR015275 Actin-fragmin kinase, catalytic "; GO:0005515,GO:0004721 NbS00020048g0018.1 protein AED:0.09 eAED:0.09 QI:278|1|1|1|1|1|4|209|140; (*GB) gi|350536815|ref|NP_001234522.1| (e_value=2e-71) acyl carrier protein [Solanum lycopersicum];; (*SWP) sp|P93092|ACP1_CASGL (e_value=3e-40) Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1;; (*TAIR) AT4G25050.1 (e_value=8e-33) | Symbols: ACP4 | acyl carrier protein 4 | chr4:12870178-12871024 FORWARD LENGTH=137;; (*ITAG) Solyc03g118410.2.1 (e_value=4e-74) genomic_reference:SL2.40ch03 gene_region:61347902-61349585 transcript_region:SL2.40ch03:61347902..61349585- go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- Q672Q9_SOLLC); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00020048g0015.1 protein AED:0.16 eAED:0.19 QI:88|0.75|0.84|1|0.25|0.38|13|365|594; (*GB) gi|147852932|emb|CAN81275.1| (e_value=0.0) hypothetical protein VITISV_021177 [Vitis vinifera];; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=0.0) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1;; (*TAIR) AT1G28110.2 (e_value=0.0) | Symbols: SCPL45 | serine carboxypeptidase-like 45 | chr1:9804153-9806832 REVERSE LENGTH=461;; (*ITAG) Solyc03g118370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61318884-61322274 transcript_region:SL2.40ch03:61318884..61322274- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TKD2_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00020048g0014.1 protein AED:0.29 eAED:0.30 QI:0|0.87|1|1|1|1|17|300|545; (*GB) gi|225456465|ref|XP_002284492.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256039 [Vitis vinifera];; (*TAIR) AT3G48860.2 (e_value=9e-152) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). | chr3:18117619-18121853 FORWARD LENGTH=577;; (*ITAG) Solyc03g118390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61331348-61340606 transcript_region:SL2.40ch03:61331348..61340606- functional_description:"Chromosome 14 contig 1 DNA sequence (AHRD V1 *-*- Q00WF1_OSTTA)"; NbS00020048g0003.1 protein AED:0.06 eAED:0.13 QI:292|1|0.5|1|0|0.5|2|0|1122; (*GB) gi|224117970|ref|XP_002317701.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SY59|NFXL1_ARATH (e_value=0.0) NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1;; (*TAIR) AT1G10170.1 (e_value=0.0) | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333925-3337491 REVERSE LENGTH=1188;; (*ITAG) Solyc03g118420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61351927-61355718 transcript_region:SL2.40ch03:61351927..61355718+ go_terms:GO:0005515 functional_description:"NF-X1 finger transcription factor (AHRD V1 **-- C5GCI1_AJEDR); contains Interpro domain(s) IPR000967 Zinc finger, NF-X1-type "; GO:0005515 NbS00061477g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|225445384|ref|XP_002281699.1| (e_value=2e-135) PREDICTED: uncharacterized protein LOC100262914 [Vitis vinifera];; (*TAIR) AT5G19970.1 (e_value=2e-87) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6747550-6748641 FORWARD LENGTH=363;; (*ITAG) Solyc08g041700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:26772360-26773568 transcript_region:SL2.40ch08:26772360..26773568- functional_description:"F-box domain containing protein (AHRD V1 ***- B6TDX7_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00061477g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|194|130; (*GB) gi|225445388|ref|XP_002284977.1| (e_value=2e-56) PREDICTED: GDP-mannose transporter GONST4 [Vitis vinifera];; (*SWP) sp|Q84L08|GONS4_ARATH (e_value=2e-41) GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1;; (*TAIR) AT5G19980.1 (e_value=2e-42) | Symbols: GONST4 | golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341;; (*ITAG) Solyc09g065600.2.1 (e_value=1e-50) genomic_reference:SL2.40ch09 gene_region:59349686-59357196 transcript_region:SL2.40ch09:59349686..59357196- functional_description:"Sugar nucleotide transporter-like protein (Fragment) (AHRD V1 *--- A8J1R9_CHLRE)"; NbS00031545g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|181|155; (*GB) gi|147822197|emb|CAN62174.1| (e_value=2e-56) hypothetical protein VITISV_027755 [Vitis vinifera];; (*TAIR) AT1G09070.1 (e_value=7e-19) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc11g013250.1.1 (e_value=6e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6158380-6158859 transcript_region:SL2.40ch11:6158380..6158859+ functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J5_CAPAN); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00031545g0010.1 protein AED:0.89 eAED:1.00 QI:0|0|0|1|1|1|2|0|59 NbS00031545g0019.1 protein AED:0.39 eAED:0.47 QI:179|0|0.33|0.66|1|1|3|0|95; (*GB) gi|356551576|ref|XP_003544150.1| (e_value=2e-19) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*TAIR) AT1G35510.1 (e_value=1e-20) | Symbols: | O-fucosyltransferase family protein | chr1:13071486-13074675 FORWARD LENGTH=568;; (*ITAG) Solyc11g013270.1.1 (e_value=7e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6174328-6179893 transcript_region:SL2.40ch11:6174328..6179893- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00031545g0018.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0|3|0|390; (*GB) gi|58979188|gb|AAW83328.1| (e_value=1e-142) mitochondrial prohibitin 1 [Petunia x hybrida];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=2e-78) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=2e-129) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc11g010190.1.1 (e_value=1e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3269915-3270754 transcript_region:SL2.40ch11:3269915..3270754+ go_terms:GO:0016020 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00005704g0004.1 protein AED:0.18 eAED:0.24 QI:0|1|0.81|1|1|1|11|0|1175; (*GB) gi|147776521|emb|CAN74012.1| (e_value=0.0) hypothetical protein VITISV_003549 [Vitis vinifera];; (*SWP) sp|Q9SB51|UBP16_ARATH (e_value=1e-153) Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1;; (*TAIR) AT4G24560.1 (e_value=7e-155) | Symbols: UBP16 | ubiquitin-specific protease 16 | chr4:12679493-12684528 REVERSE LENGTH=1008;; (*ITAG) Solyc04g076210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58737367-58746011 transcript_region:SL2.40ch04:58737367..58746011+ go_terms:GO:0006511,GO:0008270 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-*- D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511,GO:0008270 NbS00051355g0001.1 protein AED:0.11 eAED:0.12 QI:0|1|0.5|1|0|0|2|342|382; (*GB) gi|225430388|ref|XP_002285361.1| (e_value=2e-107) PREDICTED: uncharacterized protein LOC100262872 [Vitis vinifera];; (*TAIR) AT5G11000.1 (e_value=7e-68) | Symbols: | Plant protein of unknown function (DUF868) | chr5:3479166-3480335 REVERSE LENGTH=389;; (*ITAG) Solyc08g028780.1.1 (e_value=2e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:20863210-20864229 transcript_region:SL2.40ch08:20863210..20864229+ functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbC23601511g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|58; (*GB) gi|255576804|ref|XP_002529289.1| (e_value=1e-27) phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q8RY89|PI5K8_ARATH (e_value=4e-28) Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=2 SV=1;; (*TAIR) AT1G60890.1 (e_value=3e-29) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr1:22412452-22416338 REVERSE LENGTH=769;; (*ITAG) Solyc01g104140.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:84370683-84378111 transcript_region:SL2.40ch01:84370683..84378111+ go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7KLK6_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00017803g0006.1 protein AED:0.04 eAED:0.04 QI:138|1|1|1|1|1|3|241|170; (*GB) gi|225446032|ref|XP_002270117.1| (e_value=7e-95) PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Vitis vinifera];; (*SWP) sp|P16031|RBS_LARLA (e_value=2e-66) Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1;; (*TAIR) AT1G67090.1 (e_value=5e-64) | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180;; (*ITAG) Solyc07g017950.2.1 (e_value=4e-113) genomic_reference:SL2.40ch07 gene_region:8636547-8638555 transcript_region:SL2.40ch07:8636547..8638555+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- C6T529_SOYBN); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00017803g0003.1 protein AED:0.37 eAED:0.51 QI:0|0.5|0.66|1|0|0.33|3|1116|105 NbS00021601g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|0.5|0.66|3|609|173; (*GB) gi|255568597|ref|XP_002525272.1| (e_value=6e-32) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9M2W8|Y3990_ARATH (e_value=2e-25) BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana GN=At3g49900 PE=2 SV=1;; (*TAIR) AT3G49900.1 (e_value=2e-26) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:18500635-18502614 REVERSE LENGTH=517;; (*ITAG) Solyc02g092420.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:48062613-48065896 transcript_region:SL2.40ch02:48062613..48065896- go_terms:GO:0005515 functional_description:"Os07g0587200 protein (Fragment) (AHRD V1 *--- Q0D523_ORYSJ); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00033295g0004.1 protein AED:0.20 eAED:0.22 QI:389|0.93|0.93|1|1|1|16|0|686; (*GB) gi|71726956|gb|AAZ39649.1| (e_value=0.0) cytochrome P450 NADPH-reductase [Petunia x hybrida];; (*SWP) sp|Q05001|NCPR_CATRO (e_value=0.0) NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1;; (*TAIR) AT4G30210.2 (e_value=0.0) | Symbols: ATR2, AR2 | P450 reductase 2 | chr4:14796900-14800578 FORWARD LENGTH=711;; (*ITAG) Solyc07g019460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11523530-11529218 transcript_region:SL2.40ch07:11523530..11529218- go_terms:GO:0003958 functional_description:"Cytochrome P450 NADPH-reductase (AHRD V1 **** B3RFK3_PETHY); contains Interpro domain(s) IPR015702 NADPH Cytochrome P450 Reductase "; GO:0003958 NbS00027741g0022.1 protein AED:0.06 eAED:0.06 QI:216|1|0.91|1|0.90|1|12|0|1266; (*GB) gi|110226562|gb|ABG56413.1| (e_value=0.0) MDR-like ABC transporter [Catharanthus roseus];; (*SWP) sp|Q9M0M2|AB9B_ARATH (e_value=0.0) ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=2;; (*TAIR) AT4G18050.1 (e_value=0.0) | Symbols: PGP9 | P-glycoprotein 9 | chr4:10022205-10027280 FORWARD LENGTH=1236;; (*ITAG) Solyc02g071350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35409422-35415788 transcript_region:SL2.40ch02:35409422..35415788+ go_terms:GO:0004409,GO:0015459,GO:0008097,GO:0008514,GO:0046978,GO:0015232,GO:0019905,GO:0005524,GO:0005324,GO:0003697,GO:0046979,GO:0034634 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--* MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0004409,GO:0015459,GO:0008097,GO:0008514,GO:0046978,GO:0015232,GO:0019905,GO:0005524,GO:0005324,GO:0003697,GO:0046979,GO:0034634 NbS00027741g0016.1 protein AED:0.13 eAED:0.16 QI:6|0.62|0.55|1|0.87|0.88|9|1040|854; (*GB) gi|47834705|gb|AAT39006.1| (e_value=0.0) AML1 [Solanum tuberosum];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc02g071270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35330503-35339242 transcript_region:SL2.40ch02:35330503..35339242- go_terms:GO:0003723 functional_description:"RNA-binding protein (AHRD V1 *--* A8JCE7_CHLRE); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00027741g0020.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0.5|0.66|3|109|239; (*GB) gi|225453297|ref|XP_002268288.1| (e_value=4e-107) PREDICTED: protein SRG1 [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-95) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=1e-96) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071360.2.1 (e_value=1e-129) genomic_reference:SL2.40ch02 gene_region:35415823-35419393 transcript_region:SL2.40ch02:35415823..35419393- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00027741g0023.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.2|1|0.75|0.6|5|0|554; (*GB) gi|6708129|gb|AAF25812.1|AF178571_1 (e_value=0.0) phytochrome E [Solanum lycopersicum];; (*SWP) sp|P55004|PHYE_IPONI (e_value=0.0) Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1;; (*TAIR) AT4G18130.1 (e_value=0.0) | Symbols: PHYE | phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112;; (*ITAG) Solyc02g071260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35323448-35328928 transcript_region:SL2.40ch02:35323448..35328928+ go_terms:GO:0042802 functional_description:"Phytochrome E"; GO:0042802 NbS00027741g0018.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|0|0|2|0|67; (*ITAG) Solyc08g067060.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53188616-53191168 transcript_region:SL2.40ch08:53188616..53191168- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00060438g0004.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|0.75|0.8|5|183|221; (*GB) gi|217072068|gb|ACJ84394.1| (e_value=3e-130) unknown [Medicago truncatula];; (*SWP) sp|O23429|VA724_ARATH (e_value=1e-126) Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2;; (*TAIR) AT4G15780.1 (e_value=5e-127) | Symbols: ATVAMP724, VAMP724 | vesicle-associated membrane protein 724 | chr4:8980081-8981697 REVERSE LENGTH=222;; (*ITAG) Solyc01g066940.2.1 (e_value=1e-136) genomic_reference:SL2.40ch01 gene_region:67600856-67606237 transcript_region:SL2.40ch01:67600856..67606237+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00017744g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|1|4|480|641; (*GB) gi|29468498|gb|AAO85554.1| (e_value=0.0) 3-hydroxy-3-methylglutaryl-CoA reductase [Nicotiana attenuata];; (*SWP) sp|Q01559|HMDH_NICSY (e_value=0.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris GN=HMGR PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=0.0) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g038740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22198819-22201699 transcript_region:SL2.40ch02:22198819..22201699- go_terms:GO:0042282 functional_description:"3-hydroxy-3-methylglutaryl coenzyme A reductase (AHRD V1 **** Q9FS01_SOLTU); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00022342g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|0.8|0.66|6|483|283; (*GB) gi|224115526|ref|XP_002332156.1| (e_value=6e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|P47192|VA722_ARATH (e_value=2e-121) Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2;; (*TAIR) AT2G33120.1 (e_value=2e-122) | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin-related protein 1 | chr2:14043785-14045337 REVERSE LENGTH=221;; (*ITAG) Solyc02g069150.2.1 (e_value=6e-148) genomic_reference:SL2.40ch02 gene_region:33674501-33679880 transcript_region:SL2.40ch02:33674501..33679880+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00041254g0003.1 protein AED:0.00 eAED:0.00 QI:107|1|1|1|1|1|2|199|287; (*GB) gi|225457042|ref|XP_002279622.1| (e_value=2e-112) PREDICTED: dof zinc finger protein DOF5.6 [Vitis vinifera];; (*SWP) sp|Q9FM03|DOF56_ARATH (e_value=2e-43) Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2;; (*TAIR) AT5G62940.1 (e_value=2e-44) | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding family protein | chr5:25257183-25258504 REVERSE LENGTH=372;; (*ITAG) Solyc06g071480.2.1 (e_value=3e-115) genomic_reference:SL2.40ch06 gene_region:40383824-40385828 transcript_region:SL2.40ch06:40383824..40385828+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein 12 (AHRD V1 *-*- A5HWG1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00023327g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|287|115 NbS00019419g0002.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0|1|0|0|3|0|112; (*GB) gi|297843494|ref|XP_002889628.1| (e_value=1e-16) GDSL-motif lipase/hydrolase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LMJ3|GDL1_ARATH (e_value=1e-17) GDSL esterase/lipase At1g06990 OS=Arabidopsis thaliana GN=At1g06990 PE=2 SV=2;; (*TAIR) AT1G06990.1 (e_value=7e-19) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:2148393-2150009 FORWARD LENGTH=360;; (*ITAG) Solyc10g008830.2.1 (e_value=3e-14) genomic_reference:SL2.40ch10 gene_region:2891629-2896154 transcript_region:SL2.40ch10:2891629..2896154- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45960 (AHRD V1 ***- GDL86_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00019419g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|113; (*GB) gi|255547488|ref|XP_002514801.1| (e_value=1e-19) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O22927|GDL42_ARATH (e_value=1e-17) GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1;; (*TAIR) AT2G30310.1 (e_value=8e-19) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:12923055-12924371 FORWARD LENGTH=359;; (*ITAG) Solyc09g030370.2.1 (e_value=2e-21) genomic_reference:SL2.40ch09 gene_region:19776545-19777764 transcript_region:SL2.40ch09:19776545..19777764+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g30310 (AHRD V1 ***- GDL42_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00045980g0002.1 protein AED:0.05 eAED:0.11 QI:0|0|0|1|1|1|2|0|444; (*GB) gi|27085290|gb|AAN85436.1| (e_value=0.0) acyltransferase 2 [Capsicum chinense];; (*SWP) sp|Q8GT21|BEBT_CLABR (e_value=2e-134) Benzyl alcohol O-benzoyltransferase OS=Clarkia breweri PE=1 SV=1;; (*TAIR) AT3G03480.1 (e_value=4e-117) | Symbols: CHAT | acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase | chr3:828400-829863 REVERSE LENGTH=454;; (*ITAG) Solyc05g015800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12077217-12079028 transcript_region:SL2.40ch05:12077217..12079028+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00004745g0003.1 protein AED:0.08 eAED:0.08 QI:63|0.5|0.33|1|0|0.33|3|0|160; (*GB) gi|225442396|ref|XP_002282496.1| (e_value=3e-71) PREDICTED: putative mediator of RNA polymerase II transcription subunit 6 [Vitis vinifera];; (*SWP) sp|Q54PN3|MED6_DICDI (e_value=2e-20) Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1;; (*TAIR) AT3G21350.1 (e_value=3e-58) | Symbols: MED6 | RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD LENGTH=257;; (*ITAG) Solyc12g044640.1.1 (e_value=6e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45137898-45142570 transcript_region:SL2.40ch12:45137898..45142570- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 6 (AHRD V1 *-*- C1C411_RANCA); contains Interpro domain(s) IPR016820 Mediator complex, subunit Med6, metazoa/plant "; GO:0016592 NbS00047127g0003.1 protein AED:0.49 eAED:0.49 QI:369|0|0.33|0.33|0.5|0.66|3|0|78; (*ITAG) Solyc02g086750.1.1 (e_value=5e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00032321g0005.1 protein AED:0.32 eAED:0.32 QI:94|0.87|1|1|0.62|0.64|17|0|456; (*GB) gi|255543060|ref|XP_002512593.1| (e_value=0.0) Glycerol uptake protein, putative [Ricinus communis];; (*SWP) sp|Q09758|YA71_SCHPO (e_value=8e-52) Putative membrane-bound O-acyltransferase C24H6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.01c PE=2 SV=4;; (*TAIR) AT1G57600.1 (e_value=0.0) | Symbols: | MBOAT (membrane bound O-acyl transferase) family protein | chr1:21330729-21334596 REVERSE LENGTH=533;; (*ITAG) Solyc04g055190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52946594-52955402 transcript_region:SL2.40ch04:52946594..52955402+ go_terms:GO:0008374,GO:0005515 functional_description:"Glycerol uptake protein 1 (AHRD V1 **-- B3LHF0_YEAS1); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0008374,GO:0005515 NbS00032662g0007.1 protein AED:0.14 eAED:0.14 QI:2504|0.8|0.66|1|0.2|0.66|6|0|168; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=1e-53) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*TAIR) AT5G20950.2 (e_value=2e-53) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073760.2.1 (e_value=8e-58) genomic_reference:SL2.40ch06 gene_region:41905608-41910016 transcript_region:SL2.40ch06:41905608..41910016+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00032662g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.7|0.72|1|0.8|0.54|11|123|1368; (*GB) gi|312986085|gb|ADR31355.1| (e_value=0.0) ABA aldehyde oxidase [Solanum lycopersicum];; (*SWP) sp|Q7G192|ALDO2_ARATH (e_value=0.0) Aldehyde oxidase 2 OS=Arabidopsis thaliana GN=AAO2 PE=1 SV=2;; (*TAIR) AT3G43600.1 (e_value=0.0) | Symbols: AAO2, AO3, atAO-2, AOgamma, AtAO3 | aldehyde oxidase 2 | chr3:15512778-15517375 REVERSE LENGTH=1321;; (*ITAG) Solyc01g009230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3253891-3262099 transcript_region:SL2.40ch01:3253891..3262099+ go_terms:GO:0009055,GO:0051536,GO:0006468,GO:0050660,GO:0055114 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0006468,GO:0050660,GO:0055114 NbS00009133g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.66|1|0.6|0.66|6|0|254; (*GB) gi|255586246|ref|XP_002533777.1| (e_value=1e-142) Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SCX8|PPA17_ARATH (e_value=9e-121) Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1;; (*TAIR) AT3G17790.1 (e_value=7e-122) | Symbols: ATACP5, ATPAP17, PAP17 | purple acid phosphatase 17 | chr3:6089779-6090988 FORWARD LENGTH=338;; (*ITAG) Solyc06g072420.2.1 (e_value=1e-158) genomic_reference:SL2.40ch06 gene_region:41069751-41071680 transcript_region:SL2.40ch06:41069751..41071680- go_terms:GO:0016787 functional_description:"Acid phosphatase (AHRD V1 ***- B0SVS7_CAUSK); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00025210g0008.1 protein AED:0.32 eAED:0.47 QI:0|0|0|1|1|1|5|0|255; (*GB) gi|4433379|dbj|BAA20860.1| (e_value=2e-33) a polypeptide [Nicotiana sylvestris];; (*SWP) sp|Q03250|GRP7_ARATH (e_value=1e-13) Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1;; (*TAIR) AT3G26420.1 (e_value=5e-22) | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:9671953-9673055 FORWARD LENGTH=245;; (*ITAG) Solyc01g104840.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:84931483-84935040 transcript_region:SL2.40ch01:84931483..84935040- go_terms:GO:0003702 functional_description:"RNA-binding protein RZ-1 (AHRD V1 **** D0V0M9_CAPAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003702 NbS00025210g0023.1 protein AED:0.22 eAED:0.22 QI:285|1|0.5|1|0|0|2|0|217; (*GB) gi|225447854|ref|XP_002268564.1| (e_value=5e-83) PREDICTED: vacuolar iron transporter homolog 4-like [Vitis vinifera];; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=5e-73) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=4e-74) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc01g104800.2.1 (e_value=1e-105) genomic_reference:SL2.40ch01 gene_region:84921428-84922286 transcript_region:SL2.40ch01:84921428..84922286+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00025210g0015.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|1|1|2|0|456; (*GB) gi|225447854|ref|XP_002268564.1| (e_value=3e-77) PREDICTED: vacuolar iron transporter homolog 4-like [Vitis vinifera];; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=1e-74) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=9e-76) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc01g104820.2.1 (e_value=3e-117) genomic_reference:SL2.40ch01 gene_region:84926947-84927665 transcript_region:SL2.40ch01:84926947..84927665+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00025210g0021.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|0.66|1|1|3|0|97; (*ITAG) Solyc12g039050.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00025210g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|147779495|emb|CAN65436.1| (e_value=7e-52) hypothetical protein VITISV_032099 [Vitis vinifera];; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=4e-50) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=3e-51) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc01g104820.2.1 (e_value=3e-80) genomic_reference:SL2.40ch01 gene_region:84926947-84927665 transcript_region:SL2.40ch01:84926947..84927665+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00025210g0004.1 protein AED:0.41 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|225447854|ref|XP_002268564.1| (e_value=5e-60) PREDICTED: vacuolar iron transporter homolog 4-like [Vitis vinifera];; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=1e-56) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=7e-58) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc01g104800.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:84921428-84922286 transcript_region:SL2.40ch01:84921428..84922286+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00017484g0001.1 protein AED:0.42 eAED:0.44 QI:0|0|0|1|1|1|2|0|121; (*GB) gi|359475280|ref|XP_003631633.1| (e_value=2e-50) PREDICTED: uncharacterized protein LOC100852787 [Vitis vinifera];; (*TAIR) AT1G11760.1 (e_value=1e-39) | Symbols: MED32 | MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3972356-3972811 REVERSE LENGTH=151;; (*ITAG) Solyc08g078240.2.1 (e_value=4e-60) genomic_reference:SL2.40ch08 gene_region:59236252-59238091 transcript_region:SL2.40ch08:59236252..59238091- functional_description:"Unknown Protein (AHRD V1)"; NbS00017484g0006.1 protein AED:0.14 eAED:0.26 QI:5|1|0.83|1|0.8|1|6|0|997; (*GB) gi|225449780|ref|XP_002271166.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264354 [Vitis vinifera];; (*TAIR) AT4G13970.1 (e_value=0.0) | Symbols: | zinc ion binding | chr4:8070696-8074134 REVERSE LENGTH=778;; (*ITAG) Solyc08g078230.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59227078-59235040 transcript_region:SL2.40ch08:59227078..59235040+ go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7MH91_ARALY); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0008270 NbS00034335g0008.1 protein AED:0.02 eAED:0.02 QI:215|1|1|1|1|1|2|254|322; (*GB) gi|119331588|gb|ABL63120.1| (e_value=2e-81) AT-hook DNA-binding protein [Catharanthus roseus];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=3e-16) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT5G49700.1 (e_value=3e-52) | Symbols: | Predicted AT-hook DNA-binding family protein | chr5:20192599-20193429 FORWARD LENGTH=276;; (*ITAG) Solyc04g076220.2.1 (e_value=4e-111) genomic_reference:SL2.40ch04 gene_region:58757542-58758976 transcript_region:SL2.40ch04:58757542..58758976+ functional_description:"AT-hook motif nuclear localized protein 17 (AHRD V1 **-- Q9LTA2_ARATH); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00034335g0002.1 protein AED:0.24 eAED:0.27 QI:0|0.57|0.53|1|1|1|15|0|1248; (*GB) gi|147776521|emb|CAN74012.1| (e_value=0.0) hypothetical protein VITISV_003549 [Vitis vinifera];; (*SWP) sp|Q9SB51|UBP16_ARATH (e_value=6e-146) Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=2 SV=1;; (*TAIR) AT4G24560.1 (e_value=5e-147) | Symbols: UBP16 | ubiquitin-specific protease 16 | chr4:12679493-12684528 REVERSE LENGTH=1008;; (*ITAG) Solyc04g076210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58737367-58746011 transcript_region:SL2.40ch04:58737367..58746011+ go_terms:GO:0006511,GO:0008270 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-*- D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511,GO:0008270 NbS00010297g0001.1 protein AED:0.04 eAED:0.04 QI:122|1|1|1|1|1|2|350|144; (*GB) gi|225439749|ref|XP_002274570.1| (e_value=6e-44) PREDICTED: probable histone H2A.4 isoform 1 [Vitis vinifera];; (*SWP) sp|P19177|H2A_PETCR (e_value=3e-43) Histone H2A OS=Petroselinum crispum PE=2 SV=1;; (*TAIR) AT5G02560.1 (e_value=2e-42) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc09g010400.2.1 (e_value=3e-48) genomic_reference:SL2.40ch09 gene_region:3777857-3778870 transcript_region:SL2.40ch09:3777857..3778870+ go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- B9T4D3_RICCO); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00010297g0007.1 protein AED:0.28 eAED:0.27 QI:0|0.55|0.5|0.8|1|1|10|350|307; (*GB) gi|225439878|ref|XP_002278867.1| (e_value=3e-114) PREDICTED: soluble inorganic pyrophosphatase [Vitis vinifera];; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=1e-103) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT3G53620.1 (e_value=5e-108) | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216;; (*ITAG) Solyc09g010380.2.1 (e_value=3e-121) genomic_reference:SL2.40ch09 gene_region:3768116-3770648 transcript_region:SL2.40ch09:3768116..3770648+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q9LFF9_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00010297g0013.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.6|0.5|0.8|5|0|310; (*GB) gi|225439882|ref|XP_002278904.1| (e_value=6e-65) PREDICTED: uncharacterized protein LOC100253357 [Vitis vinifera];; (*TAIR) AT3G53630.1 (e_value=2e-53) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19883986-19885568 FORWARD LENGTH=194;; (*ITAG) Solyc09g010390.2.1 (e_value=3e-84) genomic_reference:SL2.40ch09 gene_region:3771605-3775900 transcript_region:SL2.40ch09:3771605..3775900+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029585g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|1|1|2|462|651; (*GB) gi|307557075|gb|ADN51990.1| (e_value=3e-125) lanceolate [Capsicum annuum];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=4e-70) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=3e-71) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc12g014140.1.1 (e_value=3e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4950340-4951524 transcript_region:SL2.40ch12:4950340..4951524- functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *--- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00015008g0008.1 protein AED:0.24 eAED:0.24 QI:272|1|0.90|1|0.8|0.81|11|0|686; (*GB) gi|225464625|ref|XP_002275958.1| (e_value=0.0) PREDICTED: translocation protein SEC63 homolog [Vitis vinifera];; (*SWP) sp|Q5R660|SEC63_PONAB (e_value=5e-27) Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2 SV=1;; (*TAIR) AT1G79940.3 (e_value=0.0) | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-containing protein | chr1:30070023-30073237 FORWARD LENGTH=687;; (*ITAG) Solyc09g009180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2524547-2534262 transcript_region:SL2.40ch09:2524547..2534262- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C8ZVX3_ENTGA); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00015008g0009.1 protein AED:0.28 eAED:0.28 QI:3|0.5|0.33|1|1|1|3|314|143; (*GB) gi|297740080|emb|CBI30262.3| (e_value=1e-62) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09970.1 (e_value=4e-56) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:3063813-3065337 FORWARD LENGTH=309;; (*ITAG) Solyc09g009170.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:2498781-2502185 transcript_region:SL2.40ch09:2498781..2502185+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase family protein (AHRD V1 **-* Q5LN54_SILPO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0004722 NbS00015008g0011.1 protein AED:0.12 eAED:0.40 QI:0|0|0|1|0|0|2|0|147 NbS00026091g0004.1 protein AED:0.06 eAED:0.08 QI:0|0.75|0.2|1|1|1|5|0|321; (*GB) gi|389986111|gb|AFL46173.1| (e_value=2e-160) jasmonate ZIM domain protein h [Nicotiana attenuata];; (*SWP) sp|Q9C9E3|TI11B_ARATH (e_value=6e-18) Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1;; (*TAIR) AT1G72450.1 (e_value=4e-19) | Symbols: JAZ6, TIFY11B | jasmonate-zim-domain protein 6 | chr1:27274336-27276136 REVERSE LENGTH=269;; (*ITAG) Solyc03g122190.2.1 (e_value=2e-102) genomic_reference:SL2.40ch03 gene_region:64155650-64158036 transcript_region:SL2.40ch03:64155650..64158036- go_terms:GO:0005515 functional_description:"Jasmonate ZIM domain 2 (AHRD V1 **-- C7SCY2_CATRO); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00009865g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.94|0.88|1|0.88|0.94|18|283|1793; (*GB) gi|138996994|dbj|BAF52858.1| (e_value=0.0) repressor of silencing 3 [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=0.0) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT2G36490.1 (e_value=0.0) | Symbols: DML1, ROS1 | demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393;; (*ITAG) Solyc10g083630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00019131g0013.1 protein AED:0.18 eAED:0.19 QI:429|0.85|0.87|1|0.71|0.62|8|312|483; (*GB) gi|24785191|dbj|BAC23059.1| (e_value=4e-63) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q8L7G0|ARFA_ARATH (e_value=4e-60) Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2;; (*TAIR) AT1G59750.4 (e_value=3e-61) | Symbols: ARF1 | auxin response factor 1 | chr1:21980414-21984193 FORWARD LENGTH=660;; (*ITAG) Solyc01g103050.2.1 (e_value=7e-61) genomic_reference:SL2.40ch01 gene_region:83494825-83500792 transcript_region:SL2.40ch01:83494825..83500792+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 1 (AHRD V1 **** D9I2J0_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005515,GO:0003700 NbS00019131g0014.1 protein AED:0.34 eAED:0.34 QI:0|1|0.92|1|0.83|0.92|13|0|441; (*GB) gi|350534912|ref|NP_001234422.1| (e_value=0.0) chorismate synthase 1, chloroplastic precursor [Solanum lycopersicum];; (*SWP) sp|Q42884|AROC1_SOLLC (e_value=0.0) Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1;; (*TAIR) AT1G48850.1 (e_value=0.0) | Symbols: EMB1144 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative | chr1:18065154-18067956 REVERSE LENGTH=436;; (*ITAG) Solyc04g049350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40676150-40683840 transcript_region:SL2.40ch04:40676150..40683840- go_terms:GO:0004107,GO:0042602 functional_description:"Chorismate synthase (AHRD V1 **** A5APN1_VITVI); contains Interpro domain(s) IPR000453 Chorismate synthase "; GO:0004107,GO:0042602 NbS00016914g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|225435321|ref|XP_002285165.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100253658 [Vitis vinifera];; (*TAIR) AT5G60680.1 (e_value=1e-44) | Symbols: | Protein of unknown function, DUF584 | chr5:24386247-24386738 FORWARD LENGTH=163;; (*ITAG) Solyc06g075170.1.1 (e_value=3e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43044324-43044815 transcript_region:SL2.40ch06:43044324..43044815- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 ***- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00021825g0013.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0.66|0.5|4|0|212; (*GB) gi|147777305|emb|CAN66802.1| (e_value=9e-82) hypothetical protein VITISV_041905 [Vitis vinifera];; (*SWP) sp|Q9ZUH5|SDR2_ARATH (e_value=4e-50) Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1;; (*TAIR) AT2G24190.1 (e_value=3e-51) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10283740-10284934 REVERSE LENGTH=296;; (*ITAG) Solyc11g071460.1.1 (e_value=6e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52002807-52004953 transcript_region:SL2.40ch11:52002807..52004953- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00021825g0014.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.66|3|0|237; (*GB) gi|357462063|ref|XP_003601313.1| (e_value=6e-95) Short-chain dehydrogenase/reductase [Medicago truncatula];; (*SWP) sp|Q9ZUH5|SDR2_ARATH (e_value=3e-69) Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1;; (*TAIR) AT2G24190.2 (e_value=7e-72) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10283740-10284934 REVERSE LENGTH=301;; (*ITAG) Solyc11g071460.1.1 (e_value=8e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52002807-52004953 transcript_region:SL2.40ch11:52002807..52004953- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00021825g0012.1 protein AED:0.14 eAED:0.14 QI:102|0.76|0.71|1|0.46|0.64|14|499|359; (*GB) gi|255561228|ref|XP_002521625.1| (e_value=0.0) aspartate kinase, putative [Ricinus communis];; (*SWP) sp|P00561|AK1H_ECOLI (e_value=3e-45) Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2;; (*TAIR) AT5G21060.1 (e_value=3e-169) | Symbols: | Glyceraldehyde-3-phosphate dehydrogenase-like family protein | chr5:7149153-7152745 REVERSE LENGTH=376;; (*ITAG) Solyc11g072010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52386097-52392740 transcript_region:SL2.40ch11:52386097..52392740- go_terms:GO:0008152,GO:0006520 functional_description:"Aspartokinase/homoserine dehydrogenase (AHRD V1 ***- C1A849_GEMAT); contains Interpro domain(s) IPR001342 Homoserine dehydrogenase, catalytic "; GO:0008152,GO:0006520 NbS00058246g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|225443007|ref|XP_002269449.1| (e_value=2e-94) PREDICTED: signal peptidase complex catalytic subunit SEC11C [Vitis vinifera];; (*SWP) sp|Q5RC30|SC11C_PONAB (e_value=6e-64) Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3;; (*TAIR) AT1G52600.1 (e_value=2e-95) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180;; (*ITAG) Solyc12g006540.1.1 (e_value=2e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1050794-1055944 transcript_region:SL2.40ch12:1050794..1055944+ go_terms:GO:0016020 functional_description:"Signal peptidase complex catalytic subunit SEC11A (AHRD V1 ***- C1BS39_9MAXI); contains Interpro domain(s) IPR001733 Peptidase S26B, eukaryotic signal peptidase "; GO:0016020 NbS00021468g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.6|0.33|0.83|0.2|0.5|6|0|258; (*GB) gi|356508839|ref|XP_003523161.1| (e_value=7e-61) PREDICTED: bidirectional sugar transporter SWEET14-like [Glycine max];; (*SWP) sp|Q2QR07|SWT13_ORYSJ (e_value=9e-62) Bidirectional sugar transporter SWEET13 OS=Oryza sativa subsp. japonica GN=SWEET13 PE=2 SV=1;; (*TAIR) AT3G48740.1 (e_value=7e-61) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097620.1.1 (e_value=5e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53398642-53400615 transcript_region:SL2.40ch03:53398642..53400615- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- B4FBY7_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00021468g0013.1 protein AED:0.25 eAED:0.25 QI:82|0.78|0.66|1|0.85|0.8|15|0|755; (*GB) gi|257831431|gb|ACV71016.1| (e_value=1e-162) UPA16 [Capsicum annuum];; (*SWP) sp|Q9LUE3|SWT10_ARATH (e_value=3e-85) Bidirectional sugar transporter SWEET10 OS=Arabidopsis thaliana GN=SWEET10 PE=2 SV=1;; (*TAIR) AT5G50790.1 (e_value=2e-86) | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family protein | chr5:20656461-20657827 REVERSE LENGTH=289;; (*ITAG) Solyc03g097600.2.1 (e_value=1e-165) genomic_reference:SL2.40ch03 gene_region:53383335-53385093 transcript_region:SL2.40ch03:53383335..53385093- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00014656g0009.1 protein AED:0.16 eAED:0.16 QI:28|0.8|0.72|1|0.4|0.36|11|217|288; (*GB) gi|225463274|ref|XP_002264091.1| (e_value=2e-166) PREDICTED: putative deoxyribonuclease TATDN1 [Vitis vinifera];; (*SWP) sp|Q6P1N9|TATD1_HUMAN (e_value=1e-84) Putative deoxyribonuclease TATDN1 OS=Homo sapiens GN=TATDN1 PE=1 SV=2;; (*TAIR) AT3G52390.2 (e_value=2e-163) | Symbols: | TatD related DNase | chr3:19423105-19425183 REVERSE LENGTH=323;; (*ITAG) Solyc06g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1330322-1337690 transcript_region:SL2.40ch06:1330322..1337690- go_terms:GO:0008296 functional_description:"Deoxyribonuclease tatD (AHRD V1 ***- B6TDE6_MAIZE); contains Interpro domain(s) IPR012278 Deoxyribonuclease, TatD Mg-dependent "; GO:0008296 NbS00024680g0010.1 protein AED:0.05 eAED:0.05 QI:8|1|0.66|1|1|1|3|2157|145; (*GB) gi|225438839|ref|XP_002278549.1| (e_value=4e-37) PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M3H5|HMA1_ARATH (e_value=8e-34) Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2;; (*TAIR) AT4G37270.1 (e_value=6e-35) | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 | chr4:17541987-17546352 REVERSE LENGTH=819;; (*ITAG) Solyc02g092920.2.1 (e_value=3e-55) genomic_reference:SL2.40ch02 gene_region:48445362-48453968 transcript_region:SL2.40ch02:48445362..48453968+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Cadmium-transporting ATPase (AHRD V1 ***- Q5WLE3_BACSK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0016020,GO:0008152,GO:0016021 NbS00024680g0012.1 protein AED:0.24 eAED:0.27 QI:24|1|0.75|1|1|1|4|0|206; (*GB) gi|88683152|emb|CAJ77510.1| (e_value=4e-119) putative cadmium/zinc-transporting ATPase [Solanum tuberosum];; (*SWP) sp|Q9M3H5|HMA1_ARATH (e_value=2e-92) Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2;; (*TAIR) AT4G37270.1 (e_value=2e-93) | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 | chr4:17541987-17546352 REVERSE LENGTH=819;; (*ITAG) Solyc02g092920.2.1 (e_value=7e-118) genomic_reference:SL2.40ch02 gene_region:48445362-48453968 transcript_region:SL2.40ch02:48445362..48453968+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Cadmium-transporting ATPase (AHRD V1 ***- Q5WLE3_BACSK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0016020,GO:0008152,GO:0016021 NbS00024680g0014.1 protein AED:0.45 eAED:0.87 QI:0|0.33|0|0.5|1|0.75|4|0|315; (*GB) gi|225438839|ref|XP_002278549.1| (e_value=1e-97) PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M3H5|HMA1_ARATH (e_value=6e-93) Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2;; (*TAIR) AT4G37270.1 (e_value=5e-94) | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 | chr4:17541987-17546352 REVERSE LENGTH=819;; (*ITAG) Solyc02g092920.2.1 (e_value=3e-149) genomic_reference:SL2.40ch02 gene_region:48445362-48453968 transcript_region:SL2.40ch02:48445362..48453968+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Cadmium-transporting ATPase (AHRD V1 ***- Q5WLE3_BACSK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0016020,GO:0008152,GO:0016021 NbS00024680g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|203; (*GB) gi|40287570|gb|AAR83899.1| (e_value=9e-46) tuber-specific protein [Capsicum annuum];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=4e-14) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT2G23290.1 (e_value=6e-19) | Symbols: AtMYB70, MYB70 | myb domain protein 70 | chr2:9904895-9905824 REVERSE LENGTH=309;; (*ITAG) Solyc02g092930.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48454678-48455763 transcript_region:SL2.40ch02:48454678..48455763- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00005877g0003.1 protein AED:0.19 eAED:0.19 QI:1812|0.75|0.77|0.88|0.62|0.44|9|0|566; (*GB) gi|302143131|emb|CBI20426.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=6e-115) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=5e-116) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc10g006720.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1184213-1188819 transcript_region:SL2.40ch10:1184213..1188819+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00005877g0008.1 protein AED:0.45 eAED:0.51 QI:0|0|0.2|1|0.25|0.6|5|0|179; (*GB) gi|224115136|ref|XP_002316951.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=1e-27) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=9e-29) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc07g063700.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63315852-63319398 transcript_region:SL2.40ch07:63315852..63319398- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00038953g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|9954112|gb|AAG08959.1|AF122051_1 (e_value=7e-141) tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=7e-74) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT5G67300.1 (e_value=5e-75) | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain protein r1 | chr5:26854109-26855026 FORWARD LENGTH=305;; (*ITAG) Solyc02g092930.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48454678-48455763 transcript_region:SL2.40ch02:48454678..48455763- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00038953g0015.1 protein AED:0.28 eAED:0.28 QI:0|0.76|0.71|1|0.69|0.78|14|401|724; (*GB) gi|225438839|ref|XP_002278549.1| (e_value=0.0) PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M3H5|HMA1_ARATH (e_value=0.0) Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic OS=Arabidopsis thaliana GN=HMA1 PE=1 SV=2;; (*TAIR) AT4G37270.1 (e_value=0.0) | Symbols: HMA1, ATHMA1 | heavy metal atpase 1 | chr4:17541987-17546352 REVERSE LENGTH=819;; (*ITAG) Solyc02g092920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48445362-48453968 transcript_region:SL2.40ch02:48445362..48453968+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Cadmium-transporting ATPase (AHRD V1 ***- Q5WLE3_BACSK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0016020,GO:0008152,GO:0016021 NbS00038953g0014.1 protein AED:0.65 eAED:0.88 QI:0|0|0|0.75|0.66|0.5|4|0|123; (*GB) gi|255567903|ref|XP_002524929.1| (e_value=3e-66) chromatin binding protein, putative [Ricinus communis];; (*SWP) sp|Q54RM0|EAF3_DICDI (e_value=2e-25) NuA4 complex subunit EAF3 homolog OS=Dictyostelium discoideum GN=DDB_G0283075 PE=3 SV=1;; (*TAIR) AT4G37280.1 (e_value=9e-62) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc02g092910.2.1 (e_value=5e-78) genomic_reference:SL2.40ch02 gene_region:48433906-48444181 transcript_region:SL2.40ch02:48433906..48444181+ go_terms:GO:0047485 functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR017398 Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit "; GO:0047485 NbS00031191g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|190887122|gb|ACE95677.1| (e_value=0.0) putative xylosyl transferase [Coffea canephora];; (*SWP) sp|Q9LZJ3|XT1_ARATH (e_value=0.0) Xyloglucan 6-xylosyltransferase OS=Arabidopsis thaliana GN=XT1 PE=1 SV=1;; (*TAIR) AT3G62720.2 (e_value=0.0) | Symbols: ATXT1, XT1, XXT1 | xylosyltransferase 1 | chr3:23201326-23202708 FORWARD LENGTH=460;; (*ITAG) Solyc03g115740.1.1 (e_value=3e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00050695g0008.1 protein AED:0.36 eAED:0.39 QI:0|0.78|0.8|1|0.71|0.73|15|286|429; (*GB) gi|255554517|ref|XP_002518297.1| (e_value=0.0) transporter, putative [Ricinus communis];; (*SWP) sp|Q9FLG8|SPNS2_ARATH (e_value=4e-170) Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1;; (*TAIR) AT5G64500.1 (e_value=3e-171) | Symbols: | Major facilitator superfamily protein | chr5:25780511-25783474 FORWARD LENGTH=484;; (*ITAG) Solyc01g106420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86077595-86088101 transcript_region:SL2.40ch01:86077595..86088101+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 **-- Q39GH8_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00050695g0009.1 protein AED:0.34 eAED:0.34 QI:148|1|1|1|1|0.8|5|0|252; (*GB) gi|224103823|ref|XP_002313207.1| (e_value=2e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXC9|IPYR1_ARATH (e_value=1e-135) Soluble inorganic pyrophosphatase 1, chloroplastic OS=Arabidopsis thaliana GN=PPA1 PE=1 SV=1;; (*TAIR) AT5G09650.1 (e_value=8e-137) | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr5:2991331-2993117 REVERSE LENGTH=300;; (*ITAG) Solyc01g106430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86088310-86092110 transcript_region:SL2.40ch01:86088310..86092110- go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase family protein (AHRD V1 **** D7M262_ARALY); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00021207g0004.1 protein AED:0.37 eAED:0.63 QI:117|0.5|0.66|1|0.5|0.33|3|0|103 NbS00021207g0009.1 protein AED:0.08 eAED:0.08 QI:58|0.6|0.5|1|0.6|0.16|6|0|540; (*GB) gi|225427896|ref|XP_002276670.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253759 [Vitis vinifera];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc01g111100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00021207g0006.1 protein AED:0.35 eAED:0.35 QI:0|1|0.75|1|0.71|1|8|0|265; (*GB) gi|224105257|ref|XP_002313743.1| (e_value=2e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T0I8|MTN1_ARATH (e_value=9e-120) 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1;; (*TAIR) AT4G38800.1 (e_value=7e-121) | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthioadenosine nucleosidase 1 | chr4:18113355-18114996 REVERSE LENGTH=267;; (*ITAG) Solyc01g111060.2.1 (e_value=5e-157) genomic_reference:SL2.40ch01 gene_region:89216546-89222824 transcript_region:SL2.40ch01:89216546..89222824+ go_terms:GO:0008930 functional_description:"5&apos-methylthioadenosine/S-adenosylhomocysteine nucleosidase (AHRD V1 **** D4FIY6_STAEP); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0008930 NbS00002853g0005.1 protein AED:0.32 eAED:0.32 QI:0|1|0.83|1|1|1|12|0|442; (*GB) gi|225445178|ref|XP_002280736.1| (e_value=0.0) PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Vitis vinifera];; (*SWP) sp|P82861|ADRO_SALFO (e_value=2e-108) NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1;; (*TAIR) AT4G32360.1 (e_value=0.0) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr4:15621550-15624711 FORWARD LENGTH=483;; (*ITAG) Solyc01g102490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83039083-83049084 transcript_region:SL2.40ch01:83039083..83049084+ go_terms:GO:0015039 functional_description:"NADPH adrenodoxin oxidoreductase fprA (NADPH-ferredoxin reductase) (AHRD V1 **-* A2VNR6_MYCTU); contains Interpro domain(s) IPR000759 Adrenodoxin reductase "; GO:0015039 NbS00002853g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|147828501|emb|CAN77580.1| (e_value=5e-91) hypothetical protein VITISV_015346 [Vitis vinifera];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=7e-28) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT5G03560.2 (e_value=1e-88) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:901452-902719 REVERSE LENGTH=363;; (*ITAG) Solyc01g102470.2.1 (e_value=9e-160) genomic_reference:SL2.40ch01 gene_region:83025974-83027160 transcript_region:SL2.40ch01:83025974..83027160- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00015118g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|147769814|emb|CAN76779.1| (e_value=1e-45) hypothetical protein VITISV_032081 [Vitis vinifera];; (*ITAG) Solyc02g092720.1.1 (e_value=2e-93) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:48289282-48290199 transcript_region:SL2.40ch02:48289282..48290199+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015118g0012.1 protein AED:0.18 eAED:0.20 QI:0|1|0|1|1|1|2|0|806; (*GB) gi|359472571|ref|XP_002281609.2| (e_value=0.0) PREDICTED: protein OBERON 3-like [Vitis vinifera];; (*SWP) sp|Q94B71|OBE3_ARATH (e_value=0.0) Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1;; (*TAIR) AT1G14740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1423) | chr1:5075450-5077732 REVERSE LENGTH=733;; (*ITAG) Solyc05g018500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22070854-22074148 transcript_region:SL2.40ch05:22070854..22074148+ functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; NbS00009464g0005.1 protein AED:0.17 eAED:0.17 QI:419|0.88|0.9|1|0.55|0.6|10|164|420; (*GB) gi|359481563|ref|XP_002277659.2| (e_value=3e-133) PREDICTED: uncharacterized protein LOC100250012 [Vitis vinifera];; (*TAIR) AT5G05140.1 (e_value=5e-83) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436;; (*ITAG) Solyc10g080930.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61435700-61439911 transcript_region:SL2.40ch10:61435700..61439911- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 *--- TCEA2_HUMAN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00021197g0004.1 protein AED:0.18 eAED:0.19 QI:456|0.89|0.95|1|0.84|0.8|20|53|1575; (*GB) gi|255539394|ref|XP_002510762.1| (e_value=5e-114) set domain protein, putative [Ricinus communis];; (*SWP) sp|Q1LY77|SE1BA_DANRE (e_value=1e-51) Histone-lysine N-methyltransferase SETD1B-A OS=Danio rerio GN=setd1ba PE=1 SV=2;; (*TAIR) AT5G42400.1 (e_value=2e-92) | Symbols: ATXR7, SDG25 | SET domain protein 25 | chr5:16954469-16960671 REVERSE LENGTH=1423;; (*ITAG) Solyc01g006880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1443026-1456707 transcript_region:SL2.40ch01:1443026..1456707+ functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6JWJ3_SCHJY); contains Interpro domain(s) IPR001214 SET "; NbS00027300g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.25|0.4|1|0|0.2|5|0|185; (*GB) gi|255548716|ref|XP_002515414.1| (e_value=8e-73) glutathione peroxidase, putative [Ricinus communis];; (*SWP) sp|O24296|GPX1_PEA (e_value=8e-66) Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G31870.1 (e_value=1e-65) | Symbols: ATGPX7, GPX7 | glutathione peroxidase 7 | chr4:15410205-15411617 FORWARD LENGTH=233;; (*ITAG) Solyc08g006720.2.1 (e_value=3e-89) genomic_reference:SL2.40ch08 gene_region:1274923-1279455 transcript_region:SL2.40ch08:1274923..1279455- go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- D6BR59_9ROSI); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00042787g0010.1 protein AED:0.04 eAED:0.04 QI:117|1|1|1|1|1|4|535|178; (*GB) gi|296089273|emb|CBI39045.3| (e_value=6e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G37480.1 (e_value=1e-29) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:14884477-14885517 REVERSE LENGTH=156;; (*ITAG) Solyc10g081480.1.1 (e_value=5e-79) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61859560-61862831 transcript_region:SL2.40ch10:61859560..61862831- functional_description:"Genomic DNA chromosome 5 P1 clone MPA22 (AHRD V1 ***- Q9FGI8_ARATH)"; NbS00042787g0014.1 protein AED:0.21 eAED:0.21 QI:162|0.90|1|1|0.81|0.66|12|269|590; (*GB) gi|225439191|ref|XP_002269447.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253507 [Vitis vinifera];; (*TAIR) AT5G35220.1 (e_value=0.0) | Symbols: EGY1 | Peptidase M50 family protein | chr5:13484606-13487546 REVERSE LENGTH=548;; (*ITAG) Solyc10g081470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61851435-61858478 transcript_region:SL2.40ch10:61851435..61858478- go_terms:GO:0006508 functional_description:"Peptidase M50 family protein (AHRD V1 ***- C1FJH6_9CHLO); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00042787g0012.1 protein AED:0.24 eAED:0.25 QI:0|0.5|0.33|1|0|0.66|3|0|270; (*GB) gi|224126013|ref|XP_002319734.1| (e_value=2e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=1e-62) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT1G08810.1 (e_value=8e-76) | Symbols: MYB60, AtMYB60 | myb domain protein 60 | chr1:2819279-2820329 REVERSE LENGTH=280;; (*ITAG) Solyc10g081490.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61866879-61868274 transcript_region:SL2.40ch10:61866879..61868274+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q8GYP5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00007957g0021.1 protein AED:0.11 eAED:0.08 QI:295|0.8|0.33|1|0.8|0.5|6|0|898; (*ITAG) Solyc02g086460.2.1 (e_value=8e-27) genomic_reference:SL2.40ch02 gene_region:43702622-43720134 transcript_region:SL2.40ch02:43702622..43720134+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007957g0024.1 protein AED:0.52 eAED:0.52 QI:0|0|0|1|0|1|2|0|90; (*ITAG) Solyc02g086460.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:43702622-43720134 transcript_region:SL2.40ch02:43702622..43720134+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007957g0023.1 protein AED:0.66 eAED:0.72 QI:0|0.33|0|1|0.33|0.25|4|0|164 NbS00007957g0022.1 protein AED:0.86 eAED:0.95 QI:0|0|0|0.5|1|0.66|6|0|688 NbS00007957g0018.1 protein AED:0.13 eAED:0.13 QI:209|0.73|0.87|0.93|0.93|0.87|16|241|514; (*GB) gi|255560896|ref|XP_002521461.1| (e_value=1e-176) Cell division cycle protein cdt2, putative [Ricinus communis];; (*SWP) sp|Q4V837|DTLA_XENLA (e_value=2e-45) Denticleless protein homolog A OS=Xenopus laevis GN=dtl-a PE=2 SV=1;; (*TAIR) AT3G27640.1 (e_value=3e-140) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535;; (*ITAG) Solyc02g086470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43724456-43729361 transcript_region:SL2.40ch02:43724456..43729361+ go_terms:GO:0030674,GO:0032403 functional_description:"WD repeat protein (AHRD V1 **-- B8MBM8_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030674,GO:0032403 NbS00007957g0010.1 protein AED:0.32 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|124; (*GB) gi|224141267|ref|XP_002323996.1| (e_value=4e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40460.1 (e_value=1e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202465-16202803 FORWARD LENGTH=112;; (*ITAG) Solyc02g086450.1.1 (e_value=8e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43695656-43695973 transcript_region:SL2.40ch02:43695656..43695973- functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00007957g0019.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|166; (*GB) gi|57013884|ref|YP_173358.1| (e_value=3e-79) orf297a [Nicotiana tabacum]; NbS00007957g0020.1 protein AED:0.28 eAED:0.62 QI:0|0|0|1|0|0|3|0|163; (*GB) gi|57013884|ref|YP_173358.1| (e_value=2e-40) orf297a [Nicotiana tabacum];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=7e-15) DNA polymerase OS=Zea mays PE=3 SV=1; NbS00018613g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|450; (*GB) gi|225436277|ref|XP_002264897.1| (e_value=0.0) PREDICTED: cytochrome P450 94A1 [Vitis vinifera];; (*SWP) sp|O81117|C94A1_VICSA (e_value=6e-110) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT2G27690.1 (e_value=0.0) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc06g074420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42443320-42444777 transcript_region:SL2.40ch06:42443320..42444777+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010578g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224107429|ref|XP_002314477.1| (e_value=2e-13) predicted protein [Populus trichocarpa]; NbS00048619g0001.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|4|0|179; (*GB) gi|147776895|emb|CAN63557.1| (e_value=1e-42) hypothetical protein VITISV_034121 [Vitis vinifera];; (*SWP) sp|Q9FN26|U79B6_ARATH (e_value=1e-37) UDP-glycosyltransferase 79B6 OS=Arabidopsis thaliana GN=UGT79B6 PE=2 SV=1;; (*TAIR) AT5G54010.1 (e_value=8e-39) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:21919819-21921180 REVERSE LENGTH=453;; (*ITAG) Solyc04g010110.2.1 (e_value=7e-39) genomic_reference:SL2.40ch04 gene_region:3399938-3405925 transcript_region:SL2.40ch04:3399938..3405925+ go_terms:GO:0016757 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 ***- B6SU01_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00013578g0010.1 protein AED:0.10 eAED:0.10 QI:584|1|1|1|1|1|4|507|487; (*GB) gi|225447929|ref|XP_002266312.1| (e_value=0.0) PREDICTED: serine hydroxymethyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q54EW1|GLYC2_DICDI (e_value=0.0) Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1;; (*TAIR) AT1G36370.1 (e_value=0.0) | Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598;; (*ITAG) Solyc01g104000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84236401-84241786 transcript_region:SL2.40ch01:84236401..84241786+ go_terms:GO:0006563,GO:0030170 functional_description:"Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0006563,GO:0030170 NbS00013578g0009.1 protein AED:0.19 eAED:0.19 QI:267|1|1|1|1|1|11|130|859; (*GB) gi|2225997|emb|CAA70870.1| (e_value=0.0) putative inward rectifying potassium channel [Solanum tuberosum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=0.0) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=0.0) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc10g024360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13609014-13615526 transcript_region:SL2.40ch10:13609014..13615526+ go_terms:GO:0005200 functional_description:"Potassium channel (AHRD V1 ***- Q9SSV3_NICPA); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005200 NbS00013636g0011.1 protein AED:0.11 eAED:0.11 QI:562|0.75|0.8|1|0.75|0.6|5|266|431; (*GB) gi|350539850|ref|NP_001234548.1| (e_value=1e-148) vsf-1 protein [Solanum lycopersicum];; (*SWP) sp|Q04088|POF21_ARATH (e_value=2e-28) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1;; (*TAIR) AT4G38900.3 (e_value=1e-78) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc04g081190.2.1 (e_value=3e-151) genomic_reference:SL2.40ch04 gene_region:62784623-62788098 transcript_region:SL2.40ch04:62784623..62788098+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00013636g0007.1 protein AED:0.34 eAED:0.34 QI:37|1|0.5|1|1|0.5|2|0|332; (*GB) gi|319718167|gb|ADV59385.1| (e_value=0.0) GAGA-binding transcriptional activator [Nicotiana tabacum];; (*SWP) sp|Q8L999|BPC6_ARATH (e_value=2e-131) Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1;; (*TAIR) AT5G42520.1 (e_value=1e-132) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=342;; (*ITAG) Solyc04g081170.2.1 (e_value=3e-175) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00017112g0103.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|359 NbS00017112g0114.1 protein AED:0.23 eAED:0.24 QI:0|0.87|0.66|1|0.62|0.66|9|0|621 NbS00012313g0018.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0|0.66|3|0|600; (*GB) gi|255561377|ref|XP_002521699.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc02g082880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41105344-41107604 transcript_region:SL2.40ch02:41105344..41107604+ go_terms:GO:0015645 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0015645 NbS00012313g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|429; (*GB) gi|255561377|ref|XP_002521699.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc02g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41097342-41100068 transcript_region:SL2.40ch02:41097342..41100068+ go_terms:GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00012313g0010.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.33|1|1|3|0|520; (*GB) gi|359494714|ref|XP_002268559.2| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase-like, partial [Vitis vinifera];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=1e-154) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=1e-155) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc02g082910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41119400-41123802 transcript_region:SL2.40ch02:41119400..41123802- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00012313g0019.1 protein AED:0.03 eAED:0.03 QI:425|1|1|1|0.66|1|4|480|253; (*GB) gi|297744909|emb|CBI38406.3| (e_value=2e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7TP48|APMAP_RAT (e_value=3e-35) Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2;; (*TAIR) AT3G51450.1 (e_value=3e-91) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:19091013-19092393 FORWARD LENGTH=371;; (*ITAG) Solyc02g082900.2.1 (e_value=6e-131) genomic_reference:SL2.40ch02 gene_region:41109528-41112540 transcript_region:SL2.40ch02:41109528..41112540- go_terms:GO:0005515,GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 **-- D7LTU8_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0005515,GO:0004064 NbS00006205g0110.1 protein AED:0.36 eAED:0.50 QI:0|0|0|1|1|1|3|0|153 NbS00006205g0102.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|1|2|60|357 NbS00006205g0103.1 protein AED:0.17 eAED:0.21 QI:0|1|0.25|1|1|1|4|0|656 NbS00001398g0009.1 protein AED:0.06 eAED:0.06 QI:226|1|1|1|1|0.66|3|661|410; (*GB) gi|225434500|ref|XP_002275567.1| (e_value=0.0) PREDICTED: cell surface receptor daf-1 [Vitis vinifera];; (*TAIR) AT5G58520.1 (e_value=8e-166) | Symbols: | Protein kinase superfamily protein | chr5:23655312-23657943 FORWARD LENGTH=604;; (*ITAG) Solyc06g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44384883-44389852 transcript_region:SL2.40ch06:44384883..44389852- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00001398g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|225434506|ref|XP_002278362.1| (e_value=3e-89) PREDICTED: uncharacterized protein At5g39865 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=8e-37) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G58530.1 (e_value=7e-68) | Symbols: | Glutaredoxin family protein | chr5:23660428-23661249 FORWARD LENGTH=273;; (*ITAG) Solyc06g082180.1.1 (e_value=1e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44376262-44377026 transcript_region:SL2.40ch06:44376262..44377026- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7MQE6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00022764g0014.1 protein AED:0.13 eAED:0.13 QI:473|1|1|1|0.16|0.14|7|251|514; (*GB) gi|225452021|ref|XP_002280181.1| (e_value=0.0) PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [Vitis vinifera];; (*SWP) sp|Q9FF17|ALG6_ARATH (e_value=0.0) Probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana GN=At5g38460 PE=2 SV=1;; (*TAIR) AT5G38460.2 (e_value=0.0) | Symbols: | ALG6, ALG8 glycosyltransferase family | chr5:15398592-15400987 REVERSE LENGTH=533;; (*ITAG) Solyc02g085860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43214290-43221559 transcript_region:SL2.40ch02:43214290..43221559+ go_terms:GO:0042281 functional_description:"Dolichyl pyrophosphate Man9GlcNAc2 alpha-1 3-glucosyltransferase (AHRD V1 **** B6K4U3_SCHJY); contains Interpro domain(s) IPR004856 Glycosyltransferase, ALG6/ALG8 "; GO:0042281 NbS00022764g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|296087288|emb|CBI33662.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|P82412|RRP3_SPIOL (e_value=8e-37) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1;; (*TAIR) AT1G68590.2 (e_value=8e-36) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=163;; (*ITAG) Solyc03g034190.2.1 (e_value=9e-39) genomic_reference:SL2.40ch03 gene_region:10158743-10161172 transcript_region:SL2.40ch03:10158743..10161172+ go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00022764g0015.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|4|552|220; (*GB) gi|359488181|ref|XP_002280096.2| (e_value=5e-63) PREDICTED: uncharacterized protein LOC100249716 [Vitis vinifera];; (*SWP) sp|Q9CX00|IST1_MOUSE (e_value=7e-16) IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1;; (*TAIR) AT1G13340.1 (e_value=4e-50) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409;; (*ITAG) Solyc02g085830.2.1 (e_value=2e-120) genomic_reference:SL2.40ch02 gene_region:43202680-43203800 transcript_region:SL2.40ch02:43202680..43203800- functional_description:"IST1 homolog (AHRD V1 **-- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00022764g0019.1 protein AED:0.15 eAED:0.15 QI:174|0.90|0.83|1|0.72|0.83|12|215|372; (*GB) gi|5640111|emb|CAB51544.1| (e_value=0.0) RAD23 protein [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q84L30|RD23D_ARATH (e_value=7e-157) Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2;; (*TAIR) AT5G38470.1 (e_value=5e-158) | Symbols: RAD23D | Rad23 UV excision repair protein family | chr5:15404720-15407500 FORWARD LENGTH=378;; (*ITAG) Solyc02g085840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43204391-43209999 transcript_region:SL2.40ch02:43204391..43209999- go_terms:GO:0031593,GO:0070628 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0031593,GO:0070628 NbS00032397g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.57|1|0.33|0.42|7|0|372; (*GB) gi|359497295|ref|XP_003635476.1| (e_value=2e-168) PREDICTED: AP2-like ethylene-responsive transcription factor AIL6-like [Vitis vinifera];; (*SWP) sp|Q52QU2|AIL6_ARATH (e_value=1e-138) AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1;; (*TAIR) AT5G10510.2 (e_value=1e-139) | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991-3320008 FORWARD LENGTH=581;; (*ITAG) Solyc05g051380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60811976-60816514 transcript_region:SL2.40ch05:60811976..60816514+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00004112g0004.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|0|0|2|0|108; (*GB) gi|147785317|emb|CAN72854.1| (e_value=2e-15) hypothetical protein VITISV_043216 [Vitis vinifera];; (*ITAG) Solyc03g071710.1.1 (e_value=7e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:41328764-41329111 transcript_region:SL2.40ch03:41328764..41329111- functional_description:"Self-pruning interacting protein 1 (AHRD V1 ***- Q9FR57_SOLLC)"; NbS00011254g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|166; (*GB) gi|10880961|gb|AAG24455.1|AF311746_1 (e_value=4e-29) 19 kDa oleosin [Perilla frutescens];; (*SWP) sp|Q9SS98|OLEO5_ARATH (e_value=1e-27) Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1;; (*TAIR) AT3G01570.1 (e_value=7e-29) | Symbols: | Oleosin family protein | chr3:222152-222778 REVERSE LENGTH=183;; (*ITAG) Solyc12g010920.1.1 (e_value=5e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3815832-3816769 transcript_region:SL2.40ch12:3815832..3816769+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q8LGL8_OLEEU); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00022872g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.4|0.16|0.66|1|1|6|0|237; (*GB) gi|359492369|ref|XP_002284600.2| (e_value=2e-87) PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera];; (*TAIR) AT1G21651.1 (e_value=6e-78) | Symbols: | zinc ion binding | chr1:7601061-7604152 REVERSE LENGTH=811;; (*ITAG) Solyc11g005030.1.1 (e_value=9e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45150-48236 transcript_region:SL2.40ch11:45150..48236- functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AUL0_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00026821g0004.1 protein AED:0.15 eAED:0.15 QI:4|1|0.87|1|0.85|0.87|8|147|350; (*GB) gi|147867192|emb|CAN79955.1| (e_value=1e-150) hypothetical protein VITISV_027427 [Vitis vinifera];; (*SWP) sp|Q6H5L4|TPP7_ORYSJ (e_value=3e-117) Probable trehalose-phosphate phosphatase 7 OS=Oryza sativa subsp. japonica GN=TPP7 PE=2 SV=2;; (*TAIR) AT1G35910.1 (e_value=6e-114) | Symbols: TPPD | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:13363200-13364965 REVERSE LENGTH=369;; (*ITAG) Solyc03g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1859030-1861212 transcript_region:SL2.40ch03:1859030..1861212+ go_terms:GO:0004805 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 **** D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0004805 NbS00016513g0004.1 protein AED:0.03 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|363; (*GB) gi|356577217|ref|XP_003556724.1| (e_value=6e-111) PREDICTED: myb-related protein 306-like [Glycine max];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=9e-67) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G15310.1 (e_value=9e-100) | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein 16 | chr5:4974894-4976106 FORWARD LENGTH=326;; (*ITAG) Solyc01g010910.1.1 (e_value=3e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:6437228-6440447 transcript_region:SL2.40ch01:6437228..6440447+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00038094g0006.1 protein AED:0.15 eAED:0.17 QI:0|0.75|0.6|1|0.75|0.8|5|0|528; (*GB) gi|224082952|ref|XP_002306905.1| (e_value=9e-133) predicted protein [Populus trichocarpa];; (*TAIR) AT3G49990.1 (e_value=3e-91) | Symbols: | unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). | chr3:18532492-18534000 REVERSE LENGTH=502;; (*ITAG) Solyc04g081030.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00006031g0005.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|2|0|152; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-42) hypothetical protein [Nicotiana tabacum]; NbS00008598g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|308; (*GB) gi|56555147|gb|AAV98199.1| (e_value=0.0) phenylalanine ammonialyase 1 [Petunia x hybrida];; (*SWP) sp|P45735|PALY_VITVI (e_value=4e-179) Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=8e-172) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00008598g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|297737247|emb|CBI26448.3| (e_value=9e-67) unnamed protein product [Vitis vinifera];; (*SWP) sp|P45732|PALY_STYHU (e_value=7e-42) Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=2e-41) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc05g056170.2.1 (e_value=4e-45) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00008598g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|116; (*GB) gi|225425821|ref|XP_002264828.1| (e_value=3e-73) PREDICTED: proteasome subunit beta type-5 [Vitis vinifera];; (*SWP) sp|O24361|PSB5_SPIOL (e_value=2e-71) Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT1G13060.1 (e_value=9e-72) | Symbols: PBE1 | 20S proteasome beta subunit E1 | chr1:4452641-4454663 FORWARD LENGTH=274;; (*ITAG) Solyc05g056160.2.1 (e_value=2e-76) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00007846g0019.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|0|0|3|338|116; (*GB) gi|224135443|ref|XP_002327219.1| (e_value=3e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LC53|EPF2_ARATH (e_value=4e-32) Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=2 SV=1;; (*TAIR) AT1G34245.1 (e_value=3e-33) | Symbols: EPF2 | Putative membrane lipoprotein | chr1:12472990-12473631 FORWARD LENGTH=120;; (*ITAG) Solyc04g072490.2.1 (e_value=6e-51) genomic_reference:SL2.40ch04 gene_region:57089582-57095928 transcript_region:SL2.40ch04:57089582..57095928- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *-*- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00007846g0024.1 protein AED:0.15 eAED:0.23 QI:8|1|0.87|1|0.57|0.5|8|0|361; (*GB) gi|302141894|emb|CBI19097.3| (e_value=9e-153) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZM3|PPCS2_ARATH (e_value=6e-135) Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2;; (*TAIR) AT1G12350.1 (e_value=1e-135) | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine synthetase | chr1:4198870-4200633 FORWARD LENGTH=317;; (*ITAG) Solyc04g072480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57085100-57088589 transcript_region:SL2.40ch04:57085100..57088589- go_terms:GO:0005515,GO:0004632 functional_description:"Phosphopantothenate--cysteine ligase (AHRD V1 **-* B6TMK9_MAIZE); contains Interpro domain(s) IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal "; GO:0005515,GO:0004632 NbS00007846g0021.1 protein AED:0.35 eAED:0.39 QI:0|0|0.33|1|0.5|0.33|3|0|421; (*GB) gi|297744184|emb|CBI37154.3| (e_value=2e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G07900.1 (e_value=6e-37) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc12g010650.1.1 (e_value=5e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00007846g0022.1 protein AED:0.47 eAED:0.49 QI:0|0.5|0.33|1|0|0.33|3|31|67; (*ITAG) Solyc12g010650.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00007846g0013.1 protein AED:0.44 eAED:0.64 QI:0|0|0|1|1|1|2|0|113; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-16) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00000039g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|0|2|105|148; (*GB) gi|377656755|gb|AFB73931.1| (e_value=1e-94) LAT52-like protein [Lycium barbarum];; (*SWP) sp|P13447|LAT52_SOLLC (e_value=8e-93) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=3e-25) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc10g007270.2.1 (e_value=5e-94) genomic_reference:SL2.40ch10 gene_region:1680589-1682164 transcript_region:SL2.40ch10:1680589..1682164- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006040 Allergen Ole e 1, conserved site "; GO:0005615 NbS00023442g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|363; (*GB) gi|225424490|ref|XP_002285189.1| (e_value=1e-143) PREDICTED: uncharacterized protein LOC100262958 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=4e-64) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT2G01940.1 (e_value=4e-120) | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445;; (*ITAG) Solyc01g005060.2.1 (e_value=4e-152) genomic_reference:SL2.40ch01 gene_region:58680-61050 transcript_region:SL2.40ch01:58680..61050- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00056599g0002.1 protein AED:0.15 eAED:0.15 QI:154|0.5|0.66|1|0|0.33|3|394|587; (*GB) gi|350536255|ref|NP_001234237.1| (e_value=0.0) auxin response factor 17 [Solanum lycopersicum];; (*SWP) sp|Q84WU6|ARFQ_ARATH (e_value=2e-162) Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1;; (*TAIR) AT1G77850.1 (e_value=1e-163) | Symbols: ARF17 | auxin response factor 17 | chr1:29272405-29275193 FORWARD LENGTH=585;; (*ITAG) Solyc11g013480.1.1 (e_value=3e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6508855-6511349 transcript_region:SL2.40ch11:6508855..6511349- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 3 (AHRD V1 ***- A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355 NbS00056599g0009.1 protein AED:0.38 eAED:0.38 QI:92|1|1|1|1|1|3|275|228; (*GB) gi|225437290|ref|XP_002262984.1| (e_value=8e-129) PREDICTED: dephospho-CoA kinase domain-containing protein [Vitis vinifera];; (*SWP) sp|Q0P4C4|DCAKD_DANRE (e_value=6e-60) Dephospho-CoA kinase domain-containing protein OS=Danio rerio GN=dcakd PE=2 SV=1;; (*TAIR) AT2G27490.2 (e_value=3e-113) | Symbols: ATCOAE | dephospho-CoA kinase family | chr2:11748087-11749009 REVERSE LENGTH=232;; (*ITAG) Solyc11g013460.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6482955-6494258 transcript_region:SL2.40ch11:6482955..6494258+ go_terms:GO:0005515,GO:0004140 functional_description:"Dephospho-CoA kinase (AHRD V1 **** B6T8Y9_MAIZE); contains Interpro domain(s) IPR001977 Dephospho-CoA kinase "; GO:0005515,GO:0004140 NbS00000927g0004.1 protein AED:0.19 eAED:0.19 QI:123|0|0|1|0|0.33|3|0|351; (*GB) gi|357475403|ref|XP_003607987.1| (e_value=1e-97) Calmodulin-like protein [Medicago truncatula];; (*SWP) sp|Q9ZQE6|CML1_ARATH (e_value=1e-62) Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1;; (*TAIR) AT2G15680.1 (e_value=8e-64) | Symbols: | Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187;; (*ITAG) Solyc01g108190.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:87315276-87316549 transcript_region:SL2.40ch01:87315276..87316549- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00019742g0002.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.33|0.66|1|1|3|0|129; (*ITAG) Solyc11g011230.1.1 (e_value=1e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00004530g0005.1 protein AED:0.22 eAED:0.22 QI:55|1|0.77|1|1|1|9|0|832; (*GB) gi|225456501|ref|XP_002280957.1| (e_value=0.0) PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O23627|SYGM1_ARATH (e_value=0.0) Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1;; (*TAIR) AT1G29880.1 (e_value=0.0) | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729;; (*ITAG) Solyc11g039830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:26495832-26502157 transcript_region:SL2.40ch11:26495832..26502157+ go_terms:GO:0006412,GO:0005737,GO:0006418 functional_description:"Glycyl-tRNA synthetase (AHRD V1 ***- D7KEM8_ARALY); contains Interpro domain(s) IPR002315 Glycyl-tRNA synthetase, alpha2 dimer "; GO:0006412,GO:0005737,GO:0006418 NbS00052354g0005.1 protein AED:0.31 eAED:0.31 QI:279|0.75|0.69|1|0.83|0.84|13|0|642; (*GB) gi|224077660|ref|XP_002305349.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DEL2|CLPT1_DANRE (e_value=2e-141) Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1;; (*TAIR) AT5G08500.1 (e_value=0.0) | Symbols: | Transmembrane CLPTM1 family protein | chr5:2748261-2751590 FORWARD LENGTH=590;; (*ITAG) Solyc05g056350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64836178-64842210 transcript_region:SL2.40ch05:64836178..64842210+ go_terms:GO:0005515 functional_description:"Cleft lip and palate associated transmembrane protein-like (AHRD V1 ***- Q9FNN8_ARATH); contains Interpro domain(s) IPR008429 Cleft lip and palate transmembrane 1 "; GO:0005515 NbS00052354g0003.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|69 NbS00034123g0006.1 protein AED:0.09 eAED:0.09 QI:241|1|1|1|1|1|14|361|1085; (*GB) gi|359476121|ref|XP_002282575.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 1 [UDP-forming]-like [Vitis vinifera];; (*SWP) sp|O48946|CESA1_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1;; (*TAIR) AT4G32410.1 (e_value=0.0) | Symbols: CESA1, RSW1, AtCESA1 | cellulose synthase 1 | chr4:15641009-15646388 REVERSE LENGTH=1081;; (*ITAG) Solyc08g061100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43867693-43876166 transcript_region:SL2.40ch08:43867693..43876166- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IKV7_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00008347g0007.1 protein AED:0.05 eAED:0.05 QI:198|1|1|1|1|1|4|288|222; (*GB) gi|356517028|ref|XP_003527192.1| (e_value=3e-63) PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like isoform 1 [Glycine max];; (*SWP) sp|O22773|TL16_ARATH (e_value=7e-57) Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3;; (*TAIR) AT4G02530.1 (e_value=5e-58) | Symbols: | chloroplast thylakoid lumen protein | chr4:1112335-1114005 REVERSE LENGTH=216;; (*ITAG) Solyc12g009600.1.1 (e_value=5e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2860613-2862594 transcript_region:SL2.40ch12:2860613..2862594- functional_description:"Thylakoid lumenal protein (AHRD V1 ***- B6SU36_MAIZE)"; NbS00008347g0004.1 protein AED:0.24 eAED:0.24 QI:126|0|0.33|0.66|1|1|3|0|264; (*GB) gi|225445563|ref|XP_002285323.1| (e_value=5e-36) PREDICTED: uncharacterized protein LOC100259445 [Vitis vinifera];; (*SWP) sp|Q9LW00|MBD11_ARATH (e_value=5e-28) Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1;; (*TAIR) AT3G15790.1 (e_value=4e-29) | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain 11 | chr3:5343209-5344386 FORWARD LENGTH=254;; (*ITAG) Solyc12g009590.1.1 (e_value=4e-61) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2852172-2859869 transcript_region:SL2.40ch12:2852172..2859869+ go_terms:GO:0005634,GO:0003677,GO:0020037 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677,GO:0020037 NbS00057220g0001.1 protein AED:0.11 eAED:0.40 QI:0|0|0|1|1|1|2|0|326; (*GB) gi|224118404|ref|XP_002317810.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|P93194|RPK1_IPONI (e_value=2e-40) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G73080.1 (e_value=5e-41) | Symbols: PEPR1, ATPEPR1 | PEP1 receptor 1 | chr1:27484513-27488021 FORWARD LENGTH=1123;; (*ITAG) Solyc03g082470.2.1 (e_value=4e-113) genomic_reference:SL2.40ch03 gene_region:45939634-45943468 transcript_region:SL2.40ch03:45939634..45943468+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00018132g0021.1 protein AED:0.33 eAED:0.35 QI:240|0.6|0.83|1|0.2|0.16|6|315|216; (*GB) gi|55294668|emb|CAH69231.1| (e_value=1e-68) putative ML domain protein [Nicotiana glauca];; (*TAIR) AT5G06480.1 (e_value=4e-32) | Symbols: | Immunoglobulin E-set superfamily protein | chr5:1976219-1977231 REVERSE LENGTH=153;; (*ITAG) Solyc01g006900.2.1 (e_value=3e-59) genomic_reference:SL2.40ch01 gene_region:1473003-1478670 transcript_region:SL2.40ch01:1473003..1478670- functional_description:"Phosphatidylglycerol/phosphatidylinositol transfer protein (AHRD V1 -**- C5M4H0_CANTT); contains Interpro domain(s) IPR003172 MD-2-related lipid-recognition "; NbS00018132g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|206114263|gb|ACI05259.1| (e_value=2e-26) type I MADS box transcription factor [Petunia x hybrida];; (*ITAG) Solyc12g016170.1.1 (e_value=6e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:6258293-6258952 transcript_region:SL2.40ch12:6258293..6258952- go_terms:GO:0005634 functional_description:"Pheres1 (Fragment) (AHRD V1 *-*- B2BFQ7_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00018132g0024.1 protein AED:0.03 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|362; (*GB) gi|255568345|ref|XP_002525147.1| (e_value=3e-141) cysteine protease, putative [Ricinus communis];; (*SWP) sp|Q9FGR9|CEP1_ARATH (e_value=9e-105) KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1;; (*TAIR) AT1G06260.1 (e_value=4e-132) | Symbols: | Cysteine proteinases superfamily protein | chr1:1916449-1917585 FORWARD LENGTH=343;; (*ITAG) Solyc07g053460.2.1 (e_value=6e-171) genomic_reference:SL2.40ch07 gene_region:59227509-59229907 transcript_region:SL2.40ch07:59227509..59229907+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00018132g0025.1 protein AED:0.18 eAED:0.18 QI:329|1|0.75|1|1|0.75|4|0|863; (*GB) gi|225439372|ref|XP_002270072.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc01g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1466483-1471428 transcript_region:SL2.40ch01:1466483..1471428+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbS00018132g0018.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|376; (*GB) gi|225439370|ref|XP_002270030.1| (e_value=4e-59) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=1e-20) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G06470.1 (e_value=1e-41) | Symbols: | Glutaredoxin family protein | chr5:1974659-1975378 REVERSE LENGTH=239;; (*ITAG) Solyc11g006430.1.1 (e_value=5e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1136221-1137306 transcript_region:SL2.40ch11:1136221..1137306- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *--- D7LZQ8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00029388g0008.1 protein AED:0.35 eAED:0.36 QI:292|0.92|0.92|1|0.69|0.78|14|171|369; (*GB) gi|225425366|ref|XP_002270179.1| (e_value=4e-103) PREDICTED: uncharacterized protein LOC100248973 [Vitis vinifera];; (*TAIR) AT1G24265.2 (e_value=1e-69) | Symbols: | Protein of unknown function (DUF1664) | chr1:8600613-8603630 FORWARD LENGTH=348;; (*ITAG) Solyc05g015820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12223810-12237766 transcript_region:SL2.40ch05:12223810..12237766+ functional_description:"BZIP transcription factor bZIP55 (Fragment) (AHRD V1 *-*- Q0GPJ6_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00029388g0004.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.5|1|1|4|0|188 NbS00018579g0009.1 protein AED:0.18 eAED:0.18 QI:92|0.84|0.64|1|0.69|0.64|14|0|661; (*GB) gi|225463870|ref|XP_002268712.1| (e_value=0.0) PREDICTED: GPI transamidase component PIG-S-like [Vitis vinifera];; (*SWP) sp|Q5XI31|PIGS_RAT (e_value=3e-30) GPI transamidase component PIG-S OS=Rattus norvegicus GN=Pigs PE=2 SV=3;; (*TAIR) AT3G07180.1 (e_value=0.0) | Symbols: | GPI transamidase component PIG-S-related | chr3:2282455-2285475 REVERSE LENGTH=599;; (*ITAG) Solyc09g059600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50495345-50506153 transcript_region:SL2.40ch09:50495345..50506153+ functional_description:"GPI transamidase component PIG-S-like (AHRD V1 *-*- Q5N713_ORYSJ); contains Interpro domain(s) IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein "; NbS00018579g0010.1 protein AED:0.32 eAED:0.32 QI:276|0.75|0.8|1|0.75|0.8|5|0|188; (*GB) gi|225463868|ref|XP_002267796.1| (e_value=7e-76) PREDICTED: uncharacterized protein LOC100246803 [Vitis vinifera];; (*TAIR) AT3G07170.1 (e_value=1e-49) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203;; (*ITAG) Solyc09g059620.2.1 (e_value=5e-112) genomic_reference:SL2.40ch09 gene_region:50519658-50529728 transcript_region:SL2.40ch09:50519658..50529728- go_terms:GO:0016757 functional_description:"SAM domain family protein (AHRD V1 **-- B6TMA1_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0016757 NbS00022478g0011.1 protein AED:0.32 eAED:0.33 QI:0|0.33|0.14|0.85|0.5|0.42|7|0|450; (*GB) gi|225459726|ref|XP_002285892.1| (e_value=7e-105) PREDICTED: peroxidase 64-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q43872|PER64_ARATH (e_value=1e-102) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=7e-104) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc12g089360.1.1 (e_value=5e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62927540-62928742 transcript_region:SL2.40ch12:62927540..62928742- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- B9GQQ9_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00022478g0015.1 protein AED:0.24 eAED:0.34 QI:0|0|0|1|0|0|4|0|290; (*GB) gi|225459726|ref|XP_002285892.1| (e_value=1e-101) PREDICTED: peroxidase 64-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q43872|PER64_ARATH (e_value=3e-95) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=2e-96) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc12g089360.1.1 (e_value=8e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62927540-62928742 transcript_region:SL2.40ch12:62927540..62928742- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- B9GQQ9_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00022478g0006.1 protein AED:0.35 eAED:0.35 QI:77|-1|0|1|-1|0|1|0|98 NbS00001646g0005.1 protein AED:0.54 eAED:0.57 QI:0|0|0|0.8|0.5|0.6|5|0|107; (*ITAG) Solyc07g045070.2.1 (e_value=8e-21) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00023355g0003.1 protein AED:0.00 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|2499328|sp|Q43844.1|NDUS7_SOLTU (e_value=8e-58) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43844|NDUS7_SOLTU (e_value=2e-59) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=8e-50) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=9e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00030771g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|114; (*ITAG) Solyc11g039970.1.1 (e_value=1e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030771g0004.1 protein AED:0.22 eAED:0.32 QI:0|0|0|1|0|0|2|0|213; (*GB) gi|57013888|ref|YP_173362.1| (e_value=7e-81) ATP synthase F0 subunit 6 [Nicotiana tabacum];; (*SWP) sp|P05499|ATP6_TOBAC (e_value=2e-82) ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1;; (*ITAG) ATMG00410.1 (e_value=5e-59) | Symbols: ATP6-1, ATP6 | ATPase subunit 6-1 | chrM:111750-112907 FORWARD LENGTH=385;; (*ITAG) Solyc11g056450.1.1 (e_value=3e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43147384-43148622 transcript_region:SL2.40ch11:43147384..43148622- go_terms:GO:0045263 functional_description:"ATP synthase subunit a (AHRD V1 ***- Q9TGX4_SOLTU); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0045263 NbS00048379g0006.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|8|402|297; (*GB) gi|225464178|ref|XP_002269817.1| (e_value=6e-167) PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SEZ6|RNH2A_ARATH (e_value=3e-150) Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2;; (*TAIR) AT2G25100.1 (e_value=3e-151) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:10679767-10681654 REVERSE LENGTH=296;; (*ITAG) Solyc11g006860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1409759-1414468 transcript_region:SL2.40ch11:1409759..1414468+ go_terms:GO:0016070,GO:0003676,GO:0004523 functional_description:"Ribonuclease (AHRD V1 ***- B9HKP4_POPTR); contains Interpro domain(s) IPR004649 Ribonuclease H2, subunit A "; GO:0016070,GO:0003676,GO:0004523 NbS00048379g0008.1 protein AED:0.20 eAED:0.25 QI:0|0|0.5|1|1|1|2|1363|135; (*ITAG) Solyc11g006890.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1424910-1425782 transcript_region:SL2.40ch11:1424910..1425782- functional_description:"Unknown Protein (AHRD V1)"; NbS00024308g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|224062723|ref|XP_002300879.1| (e_value=3e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=5e-40) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G42940.1 (e_value=1e-92) | Symbols: | Predicted AT-hook DNA-binding family protein | chr2:17862497-17863270 REVERSE LENGTH=257;; (*ITAG) Solyc07g056300.1.1 (e_value=1e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61474340-61475095 transcript_region:SL2.40ch07:61474340..61475095- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00010368g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.33|1|1|1|3|0|858; (*GB) gi|255561423|ref|XP_002521722.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17550.2 (e_value=6e-110) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 215 Blast hits to 205 proteins in 55 species: Archae - 5; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 99; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr2:7634495-7636770 REVERSE LENGTH=705;; (*ITAG) Solyc02g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40902205-40907678 transcript_region:SL2.40ch02:40902205..40907678- functional_description:"Unknown Protein (AHRD V1)"; NbS00022893g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|224101167|ref|XP_002312167.1| (e_value=4e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRM0|ATL66_ARATH (e_value=4e-27) RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1;; (*TAIR) AT3G11110.1 (e_value=3e-28) | Symbols: | RING/U-box superfamily protein | chr3:3479979-3480455 FORWARD LENGTH=158;; (*ITAG) Solyc06g051250.1.1 (e_value=1e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30968530-30969006 transcript_region:SL2.40ch06:30968530..30969006+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030414g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|0.66|0.25|4|0|172 NbS00054190g0001.1 protein AED:0.15 eAED:0.15 QI:17|1|0.8|1|0|0|5|0|185; (*GB) gi|294818247|gb|ADF42571.1| (e_value=5e-112) flowering locus T [Petunia x hybrida];; (*SWP) sp|Q9SXZ2|FT_ARATH (e_value=2e-91) Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2;; (*TAIR) AT1G65480.1 (e_value=2e-92) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc11g008640.1.1 (e_value=3e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2823863-2826262 transcript_region:SL2.40ch11:2823863..2826262- functional_description:"Flowering locus T (AHRD V1 **-- D5LM18_PETHY); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; NbS00037971g0010.1 protein AED:0.04 eAED:0.07 QI:474|0.33|0.75|1|0.33|0.75|4|265|657; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=2e-112) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.2 (e_value=4e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1). | chr3:4698860-4704773 REVERSE LENGTH=1262;; (*ITAG) Solyc06g063050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36194636-36198794 transcript_region:SL2.40ch06:36194636..36198794- functional_description:"COP1-interacting protein 7 (CIP7)-like (AHRD V1 **-- Q8GRM2_ORYSJ)"; NbS00017105g0008.1 protein AED:0.10 eAED:0.10 QI:76|0.75|0.6|1|1|0.8|5|0|535; (*GB) gi|224080572|ref|XP_002306166.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc01g111100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00017105g0001.1 protein AED:0.13 eAED:0.13 QI:233|0.88|0.9|1|0.88|0.8|10|402|301; (*GB) gi|1351271|sp|P48496.1|TPIC_SPIOL (e_value=4e-164) RecName: Full=Triosephosphate isomerase, chloroplastic; Short=TIM; Short=Triose-phosphate isomerase; Flags: Precursor;; (*SWP) sp|P48496|TPIC_SPIOL (e_value=1e-165) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1;; (*TAIR) AT2G21170.1 (e_value=2e-151) | Symbols: TIM, PDTPI | triosephosphate isomerase | chr2:9071047-9073106 REVERSE LENGTH=315;; (*ITAG) Solyc01g111120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89253979-89260194 transcript_region:SL2.40ch01:89253979..89260194- go_terms:GO:0005515,GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** D6N3G7_GOSHI); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0005515,GO:0004807 NbS00014977g0001.1 protein AED:0.12 eAED:0.12 QI:59|0.66|0.68|1|1|1|16|0|904; (*GB) gi|225464277|ref|XP_002270861.1| (e_value=0.0) PREDICTED: sucrose synthase 2-like [Vitis vinifera];; (*SWP) sp|O24301|SUS2_PEA (e_value=0.0) Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1;; (*TAIR) AT1G73370.1 (e_value=0.0) | Symbols: SUS6, ATSUS6 | sucrose synthase 6 | chr1:27584533-27588326 REVERSE LENGTH=942;; (*ITAG) Solyc03g098290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54082963-54087172 transcript_region:SL2.40ch03:54082963..54087172+ go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q9FHU4_ARATH); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria "; GO:0016157 NbS00014977g0008.1 protein AED:0.16 eAED:0.16 QI:16|0.95|0.90|1|0.95|0.90|22|432|1125; (*GB) gi|84688908|gb|ABC61503.1| (e_value=0.0) AGO1-2, partial [Nicotiana benthamiana];; (*SWP) sp|Q7XSA2|AGO1B_ORYSJ (e_value=0.0) Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3;; (*TAIR) AT1G48410.1 (e_value=0.0) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048;; (*ITAG) Solyc03g098280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54075745-54082377 transcript_region:SL2.40ch03:54075745..54082377+ go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00040031g0006.1 protein AED:0.17 eAED:0.17 QI:500|1|0.8|1|1|1|5|0|474; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=0.0) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15014070 REVERSE LENGTH=497;; (*ITAG) Solyc08g078650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00009289g0005.1 protein AED:0.30 eAED:0.30 QI:52|0.42|0.62|1|0.71|0.5|8|0|354; (*GB) gi|147843450|emb|CAN79972.1| (e_value=5e-126) hypothetical protein VITISV_010072 [Vitis vinifera];; (*SWP) sp|Q9SFB5|SCP27_ARATH (e_value=2e-104) Serine carboxypeptidase-like 27 OS=Arabidopsis thaliana GN=SCPL27 PE=2 SV=1;; (*TAIR) AT3G07990.1 (e_value=2e-105) | Symbols: SCPL27 | serine carboxypeptidase-like 27 | chr3:2552544-2554644 FORWARD LENGTH=459;; (*ITAG) Solyc07g005680.2.1 (e_value=5e-118) genomic_reference:SL2.40ch07 gene_region:561665-569230 transcript_region:SL2.40ch07:561665..569230+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00009289g0006.1 protein AED:0.24 eAED:0.24 QI:883|1|0.75|1|0.66|0.75|4|0|257; (*GB) gi|255577039|ref|XP_002529404.1| (e_value=1e-33) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g005690.2.1 (e_value=4e-113) genomic_reference:SL2.40ch07 gene_region:573797-576970 transcript_region:SL2.40ch07:573797..576970+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049193g0003.1 protein AED:0.33 eAED:0.33 QI:223|1|1|1|0.66|0.7|10|263|338; (*GB) gi|225446674|ref|XP_002281976.1| (e_value=8e-173) PREDICTED: uncharacterized protein LOC100260760 [Vitis vinifera];; (*SWP) sp|Q3AF07|DNAJ_CARHZ (e_value=2e-11) Chaperone protein DnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1;; (*TAIR) AT2G42750.1 (e_value=6e-155) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:17793404-17795419 FORWARD LENGTH=344;; (*ITAG) Solyc07g055260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60670623-60676071 transcript_region:SL2.40ch07:60670623..60676071+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 *-*- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00037509g0005.1 protein AED:0.06 eAED:0.06 QI:114|1|1|1|1|1|3|43|700; (*GB) gi|225455812|ref|XP_002274962.1| (e_value=0.0) PREDICTED: wall-associated receptor kinase-like 2 [Vitis vinifera];; (*SWP) sp|Q9S9M5|WAKLA_ARATH (e_value=2e-170) Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1;; (*TAIR) AT1G16120.1 (e_value=2e-171) | Symbols: WAKL1 | wall associated kinase-like 1 | chr1:5522639-5524983 FORWARD LENGTH=730;; (*ITAG) Solyc02g068660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33189523-33192041 transcript_region:SL2.40ch02:33189523..33192041- go_terms:GO:0016301,GO:0048602 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301,GO:0048602 NbS00020127g0012.1 protein AED:0.38 eAED:0.46 QI:0|0|0|1|1|1|2|0|181; (*GB) gi|357436015|ref|XP_003588283.1| (e_value=6e-63) Cytochrome c biogenesis [Medicago truncatula];; (*SWP) sp|P93286|CCMF_ARATH (e_value=2e-44) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=2e-45) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00020127g0020.1 protein AED:0.20 eAED:0.20 QI:328|1|1|1|0.2|0.33|6|2193|136; (*ITAG) Solyc01g073870.2.1 (e_value=3e-26) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00020127g0018.1 protein AED:0.13 eAED:0.24 QI:0|0.16|0.14|1|0|0|7|0|266; (*GB) gi|57013997|ref|YP_173468.1| (e_value=8e-93) hypothetical protein NitaMp131 [Nicotiana tabacum];; (*ITAG) Solyc00g112190.2.1 (e_value=3e-71) genomic_reference:SL2.40ch00 gene_region:16182668-16183977 transcript_region:SL2.40ch00:16182668..16183977- functional_description:"Unknown Protein (AHRD V1)"; NbS00020127g0021.1 protein AED:0.43 eAED:0.43 QI:0|0.66|0.5|1|1|1|4|0|232; (*GB) gi|359497677|ref|XP_003635604.1| (e_value=4e-20) PREDICTED: uncharacterized protein LOC100852669, partial [Vitis vinifera];; (*ITAG) Solyc11g042780.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:33828856-33832423 transcript_region:SL2.40ch11:33828856..33832423- functional_description:"Transposase (AHRD V1 *--- Q9FVG6_MAIZE)"; NbS00020127g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|345034440|gb|AEN56126.1| (e_value=2e-45) NADH dehydrogenase subunit 9 [Cucumis melo subsp. melo];; (*SWP) sp|P80261|NDUS3_SOLTU (e_value=2e-44) NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NAD9 PE=1 SV=3;; (*ITAG) ATMG00070.1 (e_value=1e-46) | Symbols: NAD9 | NADH dehydrogenase subunit 9 | chrM:23663-24235 REVERSE LENGTH=190;; (*ITAG) Solyc00g019950.1.1 (e_value=4e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:11799418-11799990 transcript_region:SL2.40ch00:11799418..11799990- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit C (AHRD V1 ***- NUOC_MAGSA); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00020127g0019.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|351653928|ref|YP_004891651.1| (e_value=2e-37) ycf2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=5e-39) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-30) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00020127g0023.1 protein AED:0.37 eAED:0.63 QI:0|0|0|1|0|0|2|0|88 NbS00025956g0011.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.71|1|0.83|0.71|7|407|302; (*GB) gi|255549046|ref|XP_002515579.1| (e_value=3e-140) 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9T0K7|HIBC6_ARATH (e_value=3e-134) 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2;; (*TAIR) AT4G13360.1 (e_value=2e-135) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:7775133-7777701 FORWARD LENGTH=421;; (*ITAG) Solyc05g018410.1.1 (e_value=5e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20741151-20746674 transcript_region:SL2.40ch05:20741151..20746674- go_terms:GO:0003860 functional_description:"Enoyl-CoA hydratase (AHRD V1 **** A3WX21_9BRAD)"; GO:0003860 NbS00025956g0009.1 protein AED:0.34 eAED:0.36 QI:610|0.85|0.75|1|0.42|0.5|8|0|637; (*GB) gi|255549052|ref|XP_002515582.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=4e-64) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT3G24440.1 (e_value=1e-150) | Symbols: VRN5, VIL1 | Fibronectin type III domain-containing protein | chr3:8876207-8878171 REVERSE LENGTH=602;; (*ITAG) Solyc05g018390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20695575-20700500 transcript_region:SL2.40ch05:20695575..20700500+ functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC); contains Interpro domain(s) IPR003961 Fibronectin, type III "; NbS00046341g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|296082718|emb|CBI21723.3| (e_value=1e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G33060.1 (e_value=3e-18) | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808;; (*ITAG) Solyc07g005150.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00004737g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|350535879|ref|NP_001233962.1| (e_value=7e-30) S-protein homologue precursor [Solanum lycopersicum];; (*TAIR) AT1G04645.1 (e_value=1e-12) | Symbols: | Plant self-incompatibility protein S1 family | chr1:1293853-1294239 REVERSE LENGTH=128;; (*ITAG) Solyc09g091320.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65941464-65941898 transcript_region:SL2.40ch09:65941464..65941898+ functional_description:"Self-incompatibility protein-like protein (AHRD V1 **-- Q9LSN9_ARATH); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00004737g0006.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.5|0|0|2|0|128 NbS00004737g0005.1 protein AED:0.33 eAED:0.88 QI:0|0|0|1|0|0|2|0|100 NbS00031478g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|3|0|274; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=4e-64) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=7e-58) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=5e-59) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc04g078430.1.1 (e_value=4e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60771681-60773069 transcript_region:SL2.40ch04:60771681..60773069+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- C3QXY1_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00009872g0006.1 protein AED:0.55 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|321149989|gb|ADW66142.1| (e_value=2e-22) DnaJ protein [Solanum nigrum];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=2e-20) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G76700.1 (e_value=2e-21) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:28780619-28783022 REVERSE LENGTH=398;; (*ITAG) Solyc12g095800.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63260262-63268516 transcript_region:SL2.40ch12:63260262..63268516- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 ***- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00009872g0013.1 protein AED:0.49 eAED:0.80 QI:81|0|0.5|1|0|0|2|28|15 NbS00009872g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|220; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-75) hypothetical protein [Nicotiana tabacum]; NbS00009872g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=3e-15) hypothetical protein [Nicotiana tabacum]; NbS00009872g0014.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|224; (*GB) gi|357435975|ref|XP_003588263.1| (e_value=5e-95) NADH-ubiquinone oxidoreductase chain [Medicago truncatula];; (*SWP) sp|Q95869|RT12_NICSY (e_value=5e-61) Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris GN=RPS12 PE=3 SV=1;; (*ITAG) ATMG00980.1 (e_value=3e-57) | Symbols: RPSL2 | Ribosomal protein S12/S23 family protein | chrM:260224-260601 REVERSE LENGTH=125;; (*ITAG) Solyc11g056360.1.1 (e_value=4e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43110058-43110498 transcript_region:SL2.40ch11:43110058..43110498- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- C8PSU8_9SPIO); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0003735,GO:0005515 NbS00009872g0017.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|4|0|199; (*GB) gi|57013905|ref|YP_173378.1| (e_value=3e-56) hypothetical protein NitaMp032 [Nicotiana tabacum]; NbS00009872g0015.1 protein AED:0.60 eAED:0.81 QI:0|0|0|0.66|0|0|3|0|137 NbS00009872g0016.1 protein AED:0.62 eAED:0.76 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|323649905|ref|YP_004237278.1| (e_value=7e-19) NADH dehydrogenase subunit 3 (mitochondrion) [Ricinus communis];; (*SWP) sp|Q96007|NU3M_ALLCE (e_value=5e-20) NADH-ubiquinone oxidoreductase chain 3 OS=Allium cepa GN=ND3 PE=3 SV=1;; (*ITAG) ATMG00990.1 (e_value=4e-21) | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:260647-261006 REVERSE LENGTH=119;; (*ITAG) Solyc11g056370.1.1 (e_value=3e-21) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43110547-43110903 transcript_region:SL2.40ch11:43110547..43110903- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit (AHRD V1 ***- A4U0C2_9PROT); contains Interpro domain(s) IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 "; GO:0055114 NbS00018600g0001.1 protein AED:0.02 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|296084034|emb|CBI24422.3| (e_value=6e-65) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MA50|PPR13_ARATH (e_value=5e-57) Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1;; (*TAIR) AT1G05750.1 (e_value=3e-58) | Symbols: PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1721523-1723025 FORWARD LENGTH=500;; (*ITAG) Solyc11g071370.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51957107-51958630 transcript_region:SL2.40ch11:51957107..51958630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017565g0001.1 protein AED:0.00 eAED:0.00 QI:131|1|0.5|1|0|0|2|0|179; (*GB) gi|225427074|ref|XP_002275856.1| (e_value=4e-119) PREDICTED: vacuolar protein sorting-associated protein 25 [Vitis vinifera];; (*SWP) sp|Q8VZC9|VPS25_ARATH (e_value=4e-113) Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1;; (*TAIR) AT4G19003.1 (e_value=3e-114) | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179;; (*ITAG) Solyc08g076130.2.1 (e_value=4e-126) genomic_reference:SL2.40ch08 gene_region:57326717-57332644 transcript_region:SL2.40ch08:57326717..57332644- go_terms:GO:0005515,GO:0004674 functional_description:"Vacuolar protein sorting protein 25 (AHRD V1 ***- B6SHU1_MAIZE); contains Interpro domain(s) IPR008570 ESCRT-II complex, vps25 subunit "; GO:0005515,GO:0004674 NbS00037086g0005.1 protein AED:0.17 eAED:0.17 QI:243|0.86|0.87|1|1|1|16|348|840; (*GB) gi|297739695|emb|CBI29877.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q10SX7|GT31_ORYSJ (e_value=3e-30) Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN=Os03g0107900 PE=2 SV=1;; (*TAIR) AT3G57630.1 (e_value=0.0) | Symbols: | exostosin family protein | chr3:21339543-21343080 REVERSE LENGTH=793;; (*ITAG) Solyc03g063750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33339545-33345614 transcript_region:SL2.40ch03:33339545..33345614+ go_terms:GO:0003824 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8J984_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00022919g0106.1 protein AED:0.31 eAED:0.32 QI:149|0.85|0.95|1|0.95|0.85|21|0|560 NbS00009819g0010.1 protein AED:0.13 eAED:0.13 QI:156|1|1|1|0.33|0.75|4|88|221; (*GB) gi|225428721|ref|XP_002284992.1| (e_value=2e-71) PREDICTED: sodium channel modifier 1 [Vitis vinifera]; NbS00009819g0016.1 protein AED:0.20 eAED:0.23 QI:0|0.8|0.68|1|0.66|0.75|16|0|540; (*GB) gi|225458519|ref|XP_002284254.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera];; (*SWP) sp|P34422|DPF6_CAEEL (e_value=4e-15) Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=2 SV=2;; (*TAIR) AT5G36210.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14248202-14253272 REVERSE LENGTH=730;; (*ITAG) Solyc10g050840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46393442-46400716 transcript_region:SL2.40ch10:46393442..46400716+ go_terms:GO:0008233 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 **** B7K7L2_CYAP7); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0008233 NbS00009819g0008.1 protein AED:0.01 eAED:0.01 QI:17|1|1|1|1|1|5|255|329; (*GB) gi|350536139|ref|NP_001234487.1| (e_value=0.0) DNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=3e-179) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*TAIR) AT3G19130.1 (e_value=1e-129) | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435;; (*ITAG) Solyc10g050860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46447848-46455490 transcript_region:SL2.40ch10:46447848..46455490- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00009819g0013.1 protein AED:0.04 eAED:0.04 QI:681|1|1|1|0.8|0.5|6|494|224; (*GB) gi|225428745|ref|XP_002285039.1| (e_value=1e-114) PREDICTED: nodulation protein H [Vitis vinifera];; (*TAIR) AT2G15730.1 (e_value=3e-114) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc01g108510.2.1 (e_value=2e-130) genomic_reference:SL2.40ch01 gene_region:87573558-87580500 transcript_region:SL2.40ch01:87573558..87580500- functional_description:"Nodulation protein H (AHRD V1 ***- NOH4_RHIME)"; NbC23510395g0001.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|67 NbS00012826g0001.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|69 NbS00013898g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|507; (*GB) gi|357454059|ref|XP_003597310.1| (e_value=0.0) Ankyrin repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-170) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc11g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53193873-53196270 transcript_region:SL2.40ch11:53193873..53196270- functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00000421g0008.1 protein AED:0.38 eAED:0.41 QI:138|0.75|0.55|1|0.5|0.66|9|0|379; (*GB) gi|224100313|ref|XP_002311828.1| (e_value=2e-161) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19050.1 (e_value=4e-161) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6369307-6371726 FORWARD LENGTH=361;; (*ITAG) Solyc01g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71805945-71820466 transcript_region:SL2.40ch01:71805945..71820466- functional_description:"Dolichol-phosphate mannosyltransferase (AHRD V1 **-- C0NU33_AJECG); contains Interpro domain(s) IPR013744 Protein of unknown function DUF1749 "; NbS00000421g0012.1 protein AED:0.10 eAED:0.21 QI:0|0|0|1|0|0|3|0|544; (*GB) gi|225432528|ref|XP_002277614.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244329 [Vitis vinifera];; (*TAIR) AT3G06150.1 (e_value=4e-179) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861971-1863755 REVERSE LENGTH=594;; (*ITAG) Solyc01g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71794005-71796554 transcript_region:SL2.40ch01:71794005..71796554- functional_description:"Unknown Protein (AHRD V1)"; NbS00040115g0003.1 protein AED:0.29 eAED:0.33 QI:0|0.66|0.7|1|0.33|0.3|10|177|227; (*GB) gi|359479459|ref|XP_002274681.2| (e_value=1e-108) PREDICTED: uncharacterized protein LOC100251769 [Vitis vinifera];; (*TAIR) AT1G50450.1 (e_value=7e-103) | Symbols: | Saccharopine dehydrogenase | chr1:18687902-18690348 REVERSE LENGTH=428;; (*ITAG) Solyc11g065240.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47693585-47702912 transcript_region:SL2.40ch11:47693585..47702912+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase family protein expressed (AHRD V1 ***- Q2QY08_ORYSJ); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00042864g0006.1 protein AED:0.42 eAED:0.42 QI:38|0.25|0.2|0.8|0.5|0.6|5|0|313; (*GB) gi|341833966|gb|AEK94318.1| (e_value=1e-81) disulfide isomerase-related protein [Pyrus x bretschneideri];; (*SWP) sp|Q93YX4|APRL5_ARATH (e_value=2e-73) 5'-adenylylsulfate reductase-like 5 OS=Arabidopsis thaliana GN=APRL5 PE=2 SV=1;; (*TAIR) AT3G03860.1 (e_value=2e-74) | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992465-994315 FORWARD LENGTH=300;; (*ITAG) Solyc01g005600.2.1 (e_value=1e-122) genomic_reference:SL2.40ch01 gene_region:420216-426321 transcript_region:SL2.40ch01:420216..426321- go_terms:GO:0045454 functional_description:"Adenosine 5&apos-phosphosulfate reductase 8 (AHRD V1 ***- Q5EUC2_MAIZE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00042864g0004.1 protein AED:0.26 eAED:0.26 QI:59|-1|0|1|-1|0|1|0|60 NbS00001665g0001.1 protein AED:0.32 eAED:0.32 QI:301|0.25|0.8|1|0|0|5|252|59 NbS00007953g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.55|0.88|0.75|0.77|9|0|500; (*GB) gi|357447557|ref|XP_003594054.1| (e_value=6e-148) Somatic embryogenesis receptor kinase [Medicago truncatula];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=1e-122) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G18910.1 (e_value=6e-141) | Symbols: | Protein kinase superfamily protein | chr5:6306994-6309396 REVERSE LENGTH=511;; (*ITAG) Solyc01g080520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72274208-72277758 transcript_region:SL2.40ch01:72274208..72277758+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 *-** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00007953g0008.1 protein AED:0.45 eAED:0.46 QI:0|0.77|0.6|0.9|0.77|0.9|10|0|302; (*GB) gi|255551573|ref|XP_002516832.1| (e_value=1e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G15545.1 (e_value=1e-57) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8875932-8877567 FORWARD LENGTH=337;; (*ITAG) Solyc01g080510.2.1 (e_value=3e-107) genomic_reference:SL2.40ch01 gene_region:72268305-72272915 transcript_region:SL2.40ch01:72268305..72272915+ functional_description:"Os05g0406000 protein (Fragment) (AHRD V1 *-*- Q0DI98_ORYSJ)"; NbS00002409g0109.1 protein AED:0.17 eAED:0.17 QI:90|0.94|0.89|1|0.72|0.78|19|469|928 NbS00022229g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.77|1|1|1|9|0|914; (*GB) gi|359485367|ref|XP_002273712.2| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Vitis vinifera];; (*SWP) sp|Q8LRK9|TAF1A_ARATH (e_value=0.0) Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1;; (*TAIR) AT1G32750.1 (e_value=0.0) | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13 protein (HAC13) | chr1:11846385-11856261 REVERSE LENGTH=1919;; (*ITAG) Solyc07g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1668427-1692877 transcript_region:SL2.40ch07:1668427..1692877+ go_terms:GO:0003712 functional_description:"Transcription initiation factor TFIID subunit 1 (AHRD V1 *--* B0W9Q3_CULQU); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003712 NbS00031245g0003.1 protein AED:0.20 eAED:0.21 QI:0|1|0|1|1|1|2|0|228; (*GB) gi|292668919|gb|ADE41114.1| (e_value=1e-60) AP2 domain class transcription factor [Malus x domestica];; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=1e-53) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1;; (*TAIR) AT5G25190.1 (e_value=9e-55) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:8707007-8707655 REVERSE LENGTH=181;; (*ITAG) Solyc06g068360.2.1 (e_value=2e-73) genomic_reference:SL2.40ch06 gene_region:38738369-38739279 transcript_region:SL2.40ch06:38738369..38739279- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00046444g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|0|0|3|0|95; (*GB) gi|147857985|emb|CAN80359.1| (e_value=2e-14) hypothetical protein VITISV_002028 [Vitis vinifera];; (*ITAG) Solyc04g078050.2.1 (e_value=4e-16) genomic_reference:SL2.40ch04 gene_region:60491106-60503545 transcript_region:SL2.40ch04:60491106..60503545+ go_terms:GO:0005669 functional_description:"Transcription initiation factor (AHRD V1 ***- D3YBD2_TRIRP); contains Interpro domain(s) IPR007900 Transcription initiation factor TFIID component TAF4 "; GO:0005669 NbS00002028g0009.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|201; (*GB) gi|225452646|ref|XP_002281856.1| (e_value=4e-122) PREDICTED: protein SEC13 homolog [Vitis vinifera];; (*SWP) sp|Q9D1M0|SEC13_MOUSE (e_value=3e-65) Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3;; (*TAIR) AT2G30050.1 (e_value=9e-116) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc03g120900.1.1 (e_value=2e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63180719-63181624 transcript_region:SL2.40ch03:63180719..63181624- go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00002028g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|225442495|ref|XP_002278380.1| (e_value=1e-68) PREDICTED: uncharacterized protein LOC100254824 [Vitis vinifera];; (*TAIR) AT1G79770.1 (e_value=5e-46) | Symbols: | Protein of unknown function (DUF1677) | chr1:30014371-30014874 FORWARD LENGTH=167;; (*ITAG) Solyc06g066530.1.1 (e_value=3e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38172469-38173044 transcript_region:SL2.40ch06:38172469..38173044+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00002028g0014.1 protein AED:0.10 eAED:0.10 QI:933|0.94|0.94|1|0.88|0.84|19|290|841; (*GB) gi|297743212|emb|CBI36079.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0.0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.1 (e_value=0.0) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836;; (*ITAG) Solyc03g120910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63195847-63202781 transcript_region:SL2.40ch03:63195847..63202781+ go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00002028g0017.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|0|0|2|21|189; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=3e-75) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=4e-31) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=1e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00002028g0006.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|194; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=4e-83) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=1e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00002028g0015.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|214; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=5e-78) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=3e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=4e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00002028g0016.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0|2|0|77; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=7e-17) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*ITAG) Solyc12g044420.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00015339g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.95|0.80|1|1|0.95|21|0|931; (*GB) gi|584795|sp|Q08436.1|PMA3_NICPL (e_value=0.0) RecName: Full=Plasma membrane ATPase 3; AltName: Full=Proton pump 3;; (*SWP) sp|Q08436|PMA3_NICPL (e_value=0.0) Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc03g113400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57608874-57615656 transcript_region:SL2.40ch03:57608874..57615656+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00015339g0009.1 protein AED:0.17 eAED:0.17 QI:234|0.57|0.37|1|0.71|0.5|8|0|926; (*GB) gi|297734038|emb|CBI15285.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LV10|PTR53_ARATH (e_value=0.0) Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1;; (*TAIR) AT5G62680.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25165430-25167822 REVERSE LENGTH=616;; (*ITAG) Solyc03g113430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57627582-57629953 transcript_region:SL2.40ch03:57627582..57629953- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00009914g0012.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.2|0.5|0.4|5|0|182; (*GB) gi|239984608|sp|P06254.3|NU1C_TOBAC (e_value=4e-48) RecName: Full=NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 1; Short=NDH subunit 1; AltName: Full=NADH-plastoquinone oxidoreductase subunit 1;; (*SWP) sp|P06254|NU1C_TOBAC (e_value=1e-49) NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3;; (*ITAG) ATCG01100.1 (e_value=7e-41) | Symbols: NDHA | NADH dehydrogenase family protein | chrC:119847-122009 REVERSE LENGTH=360;; (*ITAG) Solyc02g011800.1.1 (e_value=3e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4985089-4985561 transcript_region:SL2.40ch02:4985089..4985561- go_terms:GO:0016020 functional_description:"NAD(P)H-quinone oxidoreductase subunit 1 (AHRD V1 ***- D3WEI6_LIQST); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00009914g0014.1 protein AED:0.13 eAED:0.17 QI:0|0|0.5|1|1|1|2|0|273; (*GB) gi|350537681|ref|NP_001234304.1| (e_value=2e-146) phosphoenolpyruvate carboxylase kinase 2 [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=2e-84) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.2 (e_value=1e-85) | Symbols: PPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753150 FORWARD LENGTH=276;; (*ITAG) Solyc06g053620.2.1 (e_value=4e-149) genomic_reference:SL2.40ch06 gene_region:32942713-32944228 transcript_region:SL2.40ch06:32942713..32944228- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00009914g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|169; (*GB) gi|225268|prf||1211235DD (e_value=7e-52) NADH dehydrogenase 2-like ORF 180;; (*SWP) sp|P0CC48|NU2C1_COFAR (e_value=8e-45) NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=2e-21) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc09g061460.1.1 (e_value=4e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54753885-54754777 transcript_region:SL2.40ch09:54753885..54754777+ go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D2KLR3_OLEEU); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00009914g0011.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|3|0|318; (*GB) gi|255561919|ref|XP_002521968.1| (e_value=0.0) serine/threonine protein phosphatase, putative [Ricinus communis];; (*SWP) sp|P48489|PP1_ORYSJ (e_value=0.0) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2;; (*TAIR) AT2G39840.1 (e_value=0.0) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g053630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32955489-32960911 transcript_region:SL2.40ch06:32955489..32960911- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9S7J9_RICCO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00009914g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0.25|1|0|0|4|40|124; (*GB) gi|225465343|ref|XP_002271872.1| (e_value=3e-17) PREDICTED: transcription factor ORG2 [Vitis vinifera];; (*ITAG) Solyc10g079680.1.1 (e_value=9e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60501972-60503972 transcript_region:SL2.40ch10:60501972..60503972+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00013076g0109.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|1|0.5|0.33|3|0|364 NbS00013076g0102.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|311 NbS00013076g0107.1 protein AED:0.75 eAED:0.77 QI:0|0.33|0|0.75|0.66|0.25|4|0|313 NbS00006113g0001.1 protein AED:0.08 eAED:0.08 QI:12|0.85|0.75|1|1|1|8|462|621; (*GB) gi|255560213|ref|XP_002521124.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q55A09|Y9963_DICDI (e_value=1e-49) Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1;; (*TAIR) AT3G24715.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:9025849-9029948 FORWARD LENGTH=1117;; (*ITAG) Solyc09g091460.2.1 (e_value=6e-174) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006113g0008.1 protein AED:0.26 eAED:0.36 QI:0|0|0|0.85|0|0.28|7|0|425; (*ITAG) Solyc01g111480.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006113g0010.1 protein AED:0.67 eAED:0.86 QI:0|0|0|1|0|0|3|0|97 NbS00051492g0001.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|193 NbS00024870g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|356545390|ref|XP_003541126.1| (e_value=2e-19) PREDICTED: arginine decarboxylase-like [Glycine max];; (*ITAG) Solyc07g016040.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:6204546-6205075 transcript_region:SL2.40ch07:6204546..6205075+ go_terms:GO:0003824,GO:0030170 functional_description:"Decarboxylase (AHRD V1 ***- D7G8F2_ECTSI); contains Interpro domain(s) IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 "; GO:0003824,GO:0030170 NbS00024870g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|267; (*GB) gi|225458830|ref|XP_002285308.1| (e_value=2e-167) PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=5e-57) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT3G03990.1 (e_value=6e-159) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:1033788-1034591 FORWARD LENGTH=267;; (*ITAG) Solyc04g077860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60335672-60337954 transcript_region:SL2.40ch04:60335672..60337954- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **** Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00048614g0007.1 protein AED:0.14 eAED:0.14 QI:46|0.75|0.88|1|0.5|0.55|9|459|308; (*GB) gi|359484314|ref|XP_002282521.2| (e_value=1e-81) PREDICTED: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase-like [Vitis vinifera];; (*SWP) sp|B2ULY0|LPXA_AKKM8 (e_value=9e-26) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=lpxA PE=3 SV=1;; (*TAIR) AT4G29540.2 (e_value=2e-82) | Symbols: | bacterial transferase hexapeptide repeat-containing protein | chr4:14497775-14499765 FORWARD LENGTH=336;; (*ITAG) Solyc12g008790.1.1 (e_value=1e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2134019-2139363 transcript_region:SL2.40ch12:2134019..2139363+ go_terms:GO:0008610,GO:0016740 functional_description:"Acyl- (AHRD V1 ***- B9RKA3_RICCO); contains Interpro domain(s) IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase "; GO:0008610,GO:0016740 NbS00048614g0006.1 protein AED:0.14 eAED:0.14 QI:113|0.66|0.71|1|1|1|7|318|321; (*GB) gi|255546185|ref|XP_002514152.1| (e_value=7e-162) Grave disease carrier protein, putative [Ricinus communis];; (*SWP) sp|Q01888|GDC_BOVIN (e_value=2e-46) Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1;; (*TAIR) AT4G26180.1 (e_value=3e-137) | Symbols: | Mitochondrial substrate carrier family protein | chr4:13260263-13261887 REVERSE LENGTH=325;; (*ITAG) Solyc12g008770.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2123672-2126297 transcript_region:SL2.40ch12:2123672..2126297+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00048614g0008.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|293; (*GB) gi|23343585|emb|CAC88764.1| (e_value=2e-162) serine acetyltransferase 7 [Nicotiana tabacum];; (*SWP) sp|Q42538|SAT5_ARATH (e_value=4e-137) Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1;; (*TAIR) AT5G56760.1 (e_value=3e-138) | Symbols: ATSERAT1;1, SAT5, SAT-52, SERAT1;1 | serine acetyltransferase 1;1 | chr5:22961498-22962582 REVERSE LENGTH=312;; (*ITAG) Solyc12g008780.1.1 (e_value=6e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2127063-2129694 transcript_region:SL2.40ch12:2127063..2129694- go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbC26167358g0001.1 protein AED:0.33 eAED:0.34 QI:0|0.8|0.66|1|0.8|0.83|6|0|155; (*GB) gi|255550341|ref|XP_002516221.1| (e_value=5e-78) adrenodoxin, putative [Ricinus communis];; (*SWP) sp|Q9AKM6|FER2_RICMO (e_value=2e-46) 2Fe-2S ferredoxin OS=Rickettsia montana GN=fdxB PE=3 SV=1;; (*TAIR) AT4G21090.3 (e_value=1e-76) | Symbols: ATMFDX2, MFDX2 | MITOCHONDRIAL FERREDOXIN 2 | chr4:11256663-11258269 REVERSE LENGTH=197;; (*ITAG) Solyc01g008460.2.1 (e_value=2e-98) genomic_reference:SL2.40ch01 gene_region:2542272-2547308 transcript_region:SL2.40ch01:2542272..2547308- go_terms:GO:0009055 functional_description:"2Fe-2S ferredoxin (AHRD V1 **-- B6U5I8_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00011550g0007.1 protein AED:0.12 eAED:0.32 QI:0|0|0|1|0|0|3|0|1705; (*GB) gi|147819118|emb|CAN75603.1| (e_value=2e-175) hypothetical protein VITISV_016382 [Vitis vinifera];; (*TAIR) AT3G09670.2 (e_value=3e-63) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726;; (*ITAG) Solyc04g049930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44033230-44035993 transcript_region:SL2.40ch04:44033230..44035993+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034200g0005.1 protein AED:0.11 eAED:0.11 QI:219|0.95|1|1|0.85|0.90|21|877|867; (*GB) gi|297738709|emb|CBI27954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P45181|PQQL_HAEIN (e_value=3e-67) Probable zinc protease pqqL OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pqqL PE=3 SV=1;; (*TAIR) AT5G56730.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) protein | chr5:22946906-22952576 REVERSE LENGTH=956;; (*ITAG) Solyc12g008710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2074159-2086393 transcript_region:SL2.40ch12:2074159..2086393+ go_terms:GO:0006508,GO:0046872 functional_description:"Peptidase M16 family protein (AHRD V1 ***- D7MM64_ARALY); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00037526g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|68 NbS00037526g0002.1 protein AED:0.52 eAED:0.56 QI:0|0|0|0.66|0|0|3|0|128; (*ITAG) Solyc12g042630.1.1 (e_value=9e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43420409-43423973 transcript_region:SL2.40ch12:43420409..43423973- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00046259g0001.1 protein AED:0.03 eAED:0.03 QI:242|1|0.8|1|0|0|5|886|290; (*GB) gi|45544877|gb|AAS67374.1| (e_value=4e-147) CONSTANS interacting protein 6, partial [Solanum lycopersicum];; (*SWP) sp|Q9S736|OBE1_ARATH (e_value=1e-117) Protein OBERON 1 OS=Arabidopsis thaliana GN=OBE1 PE=1 SV=1;; (*TAIR) AT3G07780.1 (e_value=9e-119) | Symbols: OBE1 | Protein of unknown function (DUF1423) | chr3:2485104-2486876 FORWARD LENGTH=566;; (*ITAG) Solyc07g047780.2.1 (e_value=1e-170) genomic_reference:SL2.40ch07 gene_region:56318843-56323880 transcript_region:SL2.40ch07:56318843..56323880- go_terms:GO:0008270 functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; GO:0008270 NbS00051126g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|4|0|397; (*GB) gi|2459815|gb|AAC28905.1| (e_value=0.0) polygalacturonase 4 [Solanum lycopersicum];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=8e-164) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=2e-164) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g019230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9708477-9710424 transcript_region:SL2.40ch12:9708477..9710424+ go_terms:GO:0005975 functional_description:"Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00051126g0008.1 protein AED:0.13 eAED:0.14 QI:0|0.4|0.5|1|0.6|0.16|6|0|335; (*GB) gi|297824381|ref|XP_002880073.1| (e_value=3e-150) hypothetical protein ARALYDRAFT_903792 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=4e-114) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43880.1 (e_value=1e-151) | Symbols: | Pectin lyase-like superfamily protein | chr2:18173034-18174482 FORWARD LENGTH=394;; (*ITAG) Solyc12g019140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9293132-9295123 transcript_region:SL2.40ch12:9293132..9295123+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00028467g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|248; (*GB) gi|416681|sp|P32980.1|ATPD_TOBAC (e_value=4e-152) RecName: Full=ATP synthase delta chain, chloroplastic; AltName: Full=F-ATPase delta chain; Flags: Precursor;; (*SWP) sp|P32980|ATPD_TOBAC (e_value=1e-153) ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1;; (*TAIR) AT4G09650.1 (e_value=3e-85) | Symbols: ATPD | ATP synthase delta-subunit gene | chr4:6100799-6101503 FORWARD LENGTH=234;; (*ITAG) Solyc12g056830.1.1 (e_value=2e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48264644-48265396 transcript_region:SL2.40ch12:48264644..48265396+ go_terms:GO:0045261 functional_description:"ATP synthase delta subunit (AHRD V1 ***- Q7XYM8_BIGNA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00015516g0007.1 protein AED:0.14 eAED:0.14 QI:166|0.85|0.87|1|1|1|8|686|265; (*GB) gi|224140867|ref|XP_002323800.1| (e_value=2e-169) predicted protein [Populus trichocarpa];; (*SWP) sp|O23710|PSB7A_ARATH (e_value=6e-168) Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2;; (*TAIR) AT3G27430.2 (e_value=5e-169) | Symbols: PBB1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:10152910-10155052 FORWARD LENGTH=273;; (*ITAG) Solyc04g024420.2.1 (e_value=1e-179) genomic_reference:SL2.40ch04 gene_region:11945503-11951273 transcript_region:SL2.40ch04:11945503..11951273- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- A9PCK6_POPTR); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00015516g0008.1 protein AED:0.08 eAED:0.08 QI:90|0.5|0.66|1|0|0|3|0|490; (*GB) gi|225424625|ref|XP_002282301.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SAD9|PPR40_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1;; (*TAIR) AT1G13040.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:4447647-4449200 FORWARD LENGTH=517;; (*ITAG) Solyc06g008190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2072457-2073992 transcript_region:SL2.40ch06:2072457..2073992+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KPF1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018276g0009.1 protein AED:0.13 eAED:0.13 QI:192|1|0.88|1|0.75|0.66|9|0|442; (*GB) gi|359478143|ref|XP_002269633.2| (e_value=2e-151) PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera];; (*SWP) sp|A9X4U2|HSDD3_ARATH (e_value=4e-131) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2;; (*TAIR) AT2G43420.1 (e_value=3e-132) | Symbols: | 3-beta hydroxysteroid dehydrogenase/isomerase family protein | chr2:18031493-18034936 REVERSE LENGTH=561;; (*ITAG) Solyc12g021130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14337142-14346988 transcript_region:SL2.40ch12:14337142..14346988+ go_terms:GO:0008152,GO:0006694,GO:0005783 functional_description:"3-beta-hydroxysteroid dehydrogenase-like (AHRD V1 ***- Q69IL0_ORYSJ); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0008152,GO:0006694,GO:0005783 NbS00018276g0011.1 protein AED:0.37 eAED:0.53 QI:0|0.5|0|1|0|0|3|0|95; (*ITAG) Solyc03g061550.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:27744657-27745516 transcript_region:SL2.40ch03:27744657..27745516+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018276g0010.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0|2|0|60; (*ITAG) Solyc03g061550.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:27744657-27745516 transcript_region:SL2.40ch03:27744657..27745516+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015875g0002.1 protein AED:0.16 eAED:0.16 QI:257|0.5|0.33|1|0|0|3|0|84; (*GB) gi|388510630|gb|AFK43381.1| (e_value=2e-34) unknown [Lotus japonicus];; (*SWP) sp|Q67ZI9|GDL48_ARATH (e_value=4e-30) GDSL esterase/lipase At2g42990 OS=Arabidopsis thaliana GN=At2g42990 PE=2 SV=1;; (*TAIR) AT2G42990.1 (e_value=3e-31) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:17879056-17880200 FORWARD LENGTH=350;; (*ITAG) Solyc07g049430.2.1 (e_value=9e-44) genomic_reference:SL2.40ch07 gene_region:57019991-57022552 transcript_region:SL2.40ch07:57019991..57022552+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g42990 (AHRD V1 ***- GDL48_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00002494g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|255550060|ref|XP_002516081.1| (e_value=1e-29) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g120170.1.1 (e_value=2e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62690166-62690507 transcript_region:SL2.40ch03:62690166..62690507+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002494g0018.1 protein AED:0.22 eAED:0.25 QI:0|0.33|0.3|0.9|0.66|0.6|10|675|1098; (*GB) gi|225442649|ref|XP_002279674.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241173 [Vitis vinifera];; (*TAIR) AT1G52320.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). | chr1:19484421-19487204 FORWARD LENGTH=798;; (*ITAG) Solyc08g068100.2.1 (e_value=2e-170) genomic_reference:SL2.40ch08 gene_region:54382711-54391510 transcript_region:SL2.40ch08:54382711..54391510- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 **-- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00002494g0017.1 protein AED:0.32 eAED:0.32 QI:99|0.83|0.85|1|1|1|7|41|288; (*GB) gi|297743282|emb|CBI36149.3| (e_value=7e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9BUU2|MET22_HUMAN (e_value=1e-38) Methyltransferase-like protein 22 OS=Homo sapiens GN=METTL22 PE=2 SV=2;; (*TAIR) AT1G79915.1 (e_value=8e-85) | Symbols: | Putative methyltransferase family protein | chr1:30057220-30058657 FORWARD LENGTH=312;; (*ITAG) Solyc03g120130.2.1 (e_value=9e-150) genomic_reference:SL2.40ch03 gene_region:62666993-62672504 transcript_region:SL2.40ch03:62666993..62672504+ functional_description:"Rapid response to glucose protein 1 (AHRD V1 *-*- RRG1_SCHPO); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00002494g0005.1 protein AED:0.19 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|224059108|ref|XP_002299719.1| (e_value=2e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPL2|PTR32_ARATH (e_value=9e-42) Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2;; (*TAIR) AT3G16180.1 (e_value=7e-43) | Symbols: | Major facilitator superfamily protein | chr3:5481477-5484943 REVERSE LENGTH=591;; (*ITAG) Solyc03g120560.2.1 (e_value=9e-66) genomic_reference:SL2.40ch03 gene_region:62982413-62984999 transcript_region:SL2.40ch03:62982413..62984999+ go_terms:GO:0016020 functional_description:"Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7KIP6_ARALY); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00002494g0011.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|81 NbS00034251g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|224096854|ref|XP_002310762.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g090220.2.1 (e_value=1e-27) genomic_reference:SL2.40ch02 gene_region:46422517-46423548 transcript_region:SL2.40ch02:46422517..46423548+ go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9SXG5_ORYSA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00049343g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|57013967|ref|YP_173439.1| (e_value=2e-25) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbC24776685g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|76803801|gb|ABA55805.1| (e_value=2e-73) delta-8 sphingolipid desaturase [Crepis alpina];; (*SWP) sp|A4IFP3|FADS3_BOVIN (e_value=3e-17) Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=1e-73) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc10g011820.2.1 (e_value=5e-86) genomic_reference:SL2.40ch10 gene_region:4067042-4068832 transcript_region:SL2.40ch10:4067042..4068832+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6 desaturase (AHRD V1 **** D2KBG7_RIBNI); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00017819g0012.1 protein AED:0.37 eAED:0.40 QI:386|0|0|1|1|0.5|2|0|64 NbS00017819g0001.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|132; (*GB) gi|350534410|ref|NP_001234651.1| (e_value=5e-17) ELF4-like protein [Solanum lycopersicum];; (*ITAG) Solyc12g049290.1.1 (e_value=9e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46223902-46224246 transcript_region:SL2.40ch12:46223902..46224246- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKI0_SOLLC); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00000846g0005.1 protein AED:0.18 eAED:0.18 QI:325|1|0.5|1|1|1|2|0|458; (*GB) gi|224065423|ref|XP_002301810.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRT0|PUB9_ARATH (e_value=0.0) U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1;; (*TAIR) AT3G07360.1 (e_value=0.0) | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354884-2356613 FORWARD LENGTH=460;; (*ITAG) Solyc09g056450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:44819879-44822010 transcript_region:SL2.40ch09:44819879..44822010- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00000846g0007.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|1|1|2|0|64 NbS00005045g0013.1 protein AED:0.23 eAED:0.27 QI:0|0.41|0.23|0.84|0.75|0.76|13|469|1030; (*GB) gi|359495890|ref|XP_002265684.2| (e_value=9e-54) PREDICTED: uncharacterized protein LOC100263480 [Vitis vinifera];; (*TAIR) AT5G16270.1 (e_value=2e-31) | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031;; (*ITAG) Solyc11g008740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2912620-2925432 transcript_region:SL2.40ch11:2912620..2925432- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00005045g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|0|0|2|1414|214; (*GB) gi|57013955|ref|YP_173427.1| (e_value=6e-143) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=2e-116) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=1e-139) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=1e-145) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00005045g0022.1 protein AED:0.40 eAED:0.40 QI:0|0.42|0.25|0.75|0.85|0.75|8|0|241; (*GB) gi|225459779|ref|XP_002285907.1| (e_value=1e-70) PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Vitis vinifera];; (*SWP) sp|Q9BV90|SNR25_HUMAN (e_value=1e-27) U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1;; (*TAIR) AT3G07860.1 (e_value=2e-55) | Symbols: | Ubiquitin-like superfamily protein | chr3:2507895-2508656 FORWARD LENGTH=165;; (*ITAG) Solyc11g008730.1.1 (e_value=3e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2905950-2911647 transcript_region:SL2.40ch11:2905950..2911647+ functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- B5XFG3_SALSA); contains Interpro domain(s) IPR019955 Ubiquitin supergroup "; NbS00005045g0018.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.33|0.5|0.66|3|0|149; (*ITAG) Solyc00g244290.1.1 (e_value=9e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00046978g0005.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|0|0|2|0|554; (*GB) gi|1786146|dbj|BAA20137.1| (e_value=0.0) ZPT4-3 [Petunia x hybrida];; (*SWP) sp|O65499|ZAT3_ARATH (e_value=6e-14) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT1G26610.1 (e_value=2e-49) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc05g012490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5730302-5731897 transcript_region:SL2.40ch05:5730302..5731897+ go_terms:GO:0003700 functional_description:"Zinc finger protein-like (AHRD V1 *-*- Q9M202_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00027515g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|337; (*GB) gi|225426393|ref|XP_002269802.1| (e_value=4e-148) PREDICTED: putative copper-transporting ATPase 3-like [Vitis vinifera];; (*SWP) sp|Q9SH30|HMA5_ARATH (e_value=1e-122) Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2;; (*TAIR) AT1G63440.1 (e_value=9e-124) | Symbols: HMA5 | heavy metal atpase 5 | chr1:23527655-23531109 FORWARD LENGTH=995;; (*ITAG) Solyc08g080890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61228295-61231752 transcript_region:SL2.40ch08:61228295..61231752+ go_terms:GO:0004008 functional_description:"Copper-exporting ATPase (AHRD V1 **** C0X752_ENTFA); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00016740g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|225461484|ref|XP_002285047.1| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100262369 [Vitis vinifera];; (*TAIR) AT1G28280.2 (e_value=1e-59) | Symbols: | VQ motif-containing protein | chr1:9886297-9887395 REVERSE LENGTH=243;; (*ITAG) Solyc07g063070.1.1 (e_value=5e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62873214-62873915 transcript_region:SL2.40ch07:62873214..62873915- functional_description:"DNA-binding WRKY VQ (AHRD V1 ***- Q2HTS9_MEDTR); contains Interpro domain(s) IPR008889 VQ "; NbS00016740g0002.1 protein AED:0.16 eAED:0.16 QI:218|0.90|0.91|1|1|1|12|677|575; (*GB) gi|297796229|ref|XP_002865999.1| (e_value=0.0) hypothetical protein ARALYDRAFT_331733 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q2R483|MTBC_ORYSJ (e_value=0.0) Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 OS=Oryza sativa subsp. japonica GN=Os11g0484000 PE=2 SV=1;; (*TAIR) AT5G53850.2 (e_value=0.0) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr5:21861155-21864817 REVERSE LENGTH=507;; (*ITAG) Solyc07g063040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62856775-62862494 transcript_region:SL2.40ch07:62856775..62862494+ go_terms:GO:0046872,GO:0008152,GO:0005737,GO:0019509 functional_description:"Enolase-phosphatase E-1 (AHRD V1 *-*- A8UQN2_9AQUI); contains Interpro domain(s) IPR017714 Methylthioribulose-1-phosphate dehydratase "; GO:0046872,GO:0008152,GO:0005737,GO:0019509 NbS00061275g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|2401257|dbj|BAA22204.1| (e_value=2e-97) TBZ17 [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-21) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G62420.1 (e_value=3e-46) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc06g009640.1.1 (e_value=2e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:3585368-3585802 transcript_region:SL2.40ch06:3585368..3585802- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* Q1HW69_CAPAN); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0043565,GO:0003700,GO:0046982 NbS00050940g0008.1 protein AED:0.40 eAED:0.40 QI:0|0.5|0.33|1|0.5|0.66|3|255|136; (*GB) gi|302141839|emb|CBI19042.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55DP8|ACY1_DICDI (e_value=1e-20) Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1;; (*TAIR) AT1G44820.1 (e_value=6e-45) | Symbols: | Peptidase M20/M25/M40 family protein | chr1:16926351-16928354 FORWARD LENGTH=438;; (*ITAG) Solyc11g012970.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5799780-5805190 transcript_region:SL2.40ch11:5799780..5805190+ go_terms:GO:0008152,GO:0005737 functional_description:"Aminoacylase-1 (AHRD V1 ***- B6TNG9_MAIZE); contains Interpro domain(s) IPR010159 N-acyl-L-amino-acid amidohydrolase "; GO:0008152,GO:0005737 NbS00061957g0002.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|0.5|0.66|3|0|122; (*ITAG) Solyc01g009770.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:4155983-4159096 transcript_region:SL2.40ch01:4155983..4159096- go_terms:GO:0005515 functional_description:"Major ampullate spidroin 2-2 (AHRD V1 *-*- B6TJV0_MAIZE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00003280g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0.25|0.25|1|1|4|336|96; (*GB) gi|13384058|gb|AAK21253.1|AF335240_1 (e_value=6e-23) MADS-box transcription factor FBP22 [Petunia x hybrida];; (*SWP) sp|O64645|SOC1_ARATH (e_value=2e-17) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT5G62165.4 (e_value=6e-23) | Symbols: AGL42 | AGAMOUS-like 42 | chr5:24965075-24968437 FORWARD LENGTH=196;; (*ITAG) Solyc03g006830.2.1 (e_value=4e-24) genomic_reference:SL2.40ch03 gene_region:1331841-1343493 transcript_region:SL2.40ch03:1331841..1343493+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00003280g0002.1 protein AED:0.33 eAED:0.34 QI:92|0|0.5|1|0|0.5|2|0|69; (*GB) gi|316890756|gb|ADU56824.1| (e_value=3e-35) MADS-box protein TM3 subfamily [Coffea arabica];; (*SWP) sp|Q38838|AGL14_ARATH (e_value=7e-32) Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2;; (*TAIR) AT5G62165.4 (e_value=5e-34) | Symbols: AGL42 | AGAMOUS-like 42 | chr5:24965075-24968437 FORWARD LENGTH=196;; (*ITAG) Solyc08g080100.2.1 (e_value=3e-32) genomic_reference:SL2.40ch08 gene_region:60586947-60598079 transcript_region:SL2.40ch08:60586947..60598079- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00011306g0004.1 protein AED:0.20 eAED:0.20 QI:298|0.66|0.57|1|0.66|0.71|7|774|287; (*GB) gi|255553837|ref|XP_002517959.1| (e_value=6e-144) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03420.1 (e_value=7e-122) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc10g008480.2.1 (e_value=1e-175) genomic_reference:SL2.40ch10 gene_region:2599168-2602228 transcript_region:SL2.40ch10:2599168..2602228- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00019616g0002.1 protein AED:0.15 eAED:0.16 QI:0|0.6|0.33|1|1|1|6|0|264; (*GB) gi|255537385|ref|XP_002509759.1| (e_value=2e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G15050.1 (e_value=1e-37) | Symbols: | Protein of Unknown Function (DUF239) | chr4:8588548-8590345 REVERSE LENGTH=396;; (*ITAG) Solyc08g074870.1.1 (e_value=2e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56182191-56186322 transcript_region:SL2.40ch08:56182191..56186322- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SXW9_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00045256g0001.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|356518330|ref|XP_003527832.1| (e_value=7e-25) PREDICTED: LOW QUALITY PROTEIN: probable protein Pop3-like [Glycine max];; (*SWP) sp|Q9LUV2|POP3_ARATH (e_value=5e-21) Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1;; (*TAIR) AT3G17210.1 (e_value=4e-22) | Symbols: ATHS1, HS1 | heat stable protein 1 | chr3:5882318-5882896 FORWARD LENGTH=109;; (*ITAG) Solyc05g053310.2.1 (e_value=2e-27) genomic_reference:SL2.40ch05 gene_region:62578841-62580666 transcript_region:SL2.40ch05:62578841..62580666- functional_description:"Stress responsive A/B barrel domain family protein (AHRD V1 ***- D7HD13_VIBCH); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00010663g0014.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.5|2|0|297; (*GB) gi|225456920|ref|XP_002278063.1| (e_value=6e-64) PREDICTED: transcription factor MYB39 [Vitis vinifera];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=3e-16) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G09540.1 (e_value=9e-19) | Symbols: MYB61, ATMYB61 | myb domain protein 61 | chr1:3086333-3087689 FORWARD LENGTH=366;; (*ITAG) Solyc03g112390.2.1 (e_value=2e-93) genomic_reference:SL2.40ch03 gene_region:56846635-56848344 transcript_region:SL2.40ch03:56846635..56848344- go_terms:GO:0003677,GO:0045449 functional_description:"Myb transcription factor (AHRD V1 *--- D6BV29_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00010663g0010.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|94 NbS00010663g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|3608481|gb|AAD13388.1| (e_value=6e-97) ribosomal protein L27a [Petunia x hybrida];; (*SWP) sp|P49637|R27A3_ARATH (e_value=2e-88) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=2e-89) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc03g112360.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56836935-56837381 transcript_region:SL2.40ch03:56836935..56837381+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00010663g0016.1 protein AED:0.20 eAED:0.20 QI:7|1|0.88|1|1|1|9|298|622; (*GB) gi|224135925|ref|XP_002322195.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4R3|RH30_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2;; (*TAIR) AT5G63120.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25318967-25322071 REVERSE LENGTH=591;; (*ITAG) Solyc03g112350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56827497-56836249 transcript_region:SL2.40ch03:56827497..56836249+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00010663g0004.1 protein AED:0.14 eAED:0.69 QI:0|1|0.5|1|0|0|2|631|601; (*GB) gi|255540541|ref|XP_002511335.1| (e_value=0.0) hypothetical protein RCOM_1509330 [Ricinus communis];; (*TAIR) AT3G26600.1 (e_value=0.0) | Symbols: ARO4 | armadillo repeat only 4 | chr3:9769889-9771736 FORWARD LENGTH=615;; (*ITAG) Solyc02g083820.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00023789g0007.1 protein AED:0.00 eAED:0.00 QI:119|1|1|1|1|1|2|37|146; (*GB) gi|359480520|ref|XP_003632481.1| (e_value=1e-27) PREDICTED: uncharacterized protein At5g65660-like [Vitis vinifera];; (*SWP) sp|Q9LSK9|Y5566_ARATH (e_value=3e-23) Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1;; (*TAIR) AT5G65660.1 (e_value=2e-24) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:26245444-26246245 REVERSE LENGTH=136;; (*ITAG) Solyc02g063420.2.1 (e_value=2e-45) genomic_reference:SL2.40ch02 gene_region:30083702-30084745 transcript_region:SL2.40ch02:30083702..30084745+ functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 **-- A9YWR1_MEDTR)"; NbS00052778g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|359473000|ref|XP_002278677.2| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=1e-49) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT3G25700.1 (e_value=7e-169) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:9358937-9360295 FORWARD LENGTH=452;; (*ITAG) Solyc05g009890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4112338-4113699 transcript_region:SL2.40ch05:4112338..4113699- go_terms:GO:0003677 functional_description:"Chloroplast nucleoid DNA binding protein-like (AHRD V1 **-* Q9LTW4_ARATH); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00019910g0005.1 protein AED:0.12 eAED:0.12 QI:95|0.81|0.75|1|0.81|0.83|12|104|400; (*GB) gi|225428019|ref|XP_002277777.1| (e_value=9e-142) PREDICTED: uncharacterized protein LOC100250259 [Vitis vinifera];; (*SWP) sp|Q7L590|MCM10_HUMAN (e_value=6e-18) Protein MCM10 homolog OS=Homo sapiens GN=MCM10 PE=1 SV=2;; (*TAIR) AT2G20980.1 (e_value=1e-110) | Symbols: MCM10 | minichromosome maintenance 10 | chr2:9011654-9013856 REVERSE LENGTH=396;; (*ITAG) Solyc01g111550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89541439-89545271 transcript_region:SL2.40ch01:89541439..89545271+ go_terms:GO:0005634 functional_description:"Protein MCM10 homolog (AHRD V1 *--- MCM10_XENTR); contains Interpro domain(s) IPR015408 Zinc finger, Mcm10/DnaG-type "; GO:0005634 NbS00036342g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.86|0.82|1|0.95|0.91|23|420|1165; (*GB) gi|356512505|ref|XP_003524959.1| (e_value=0.0) PREDICTED: importin-5-like [Glycine max];; (*SWP) sp|Q8BKC5|IPO5_MOUSE (e_value=0.0) Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00036342g0007.1 protein AED:0.28 eAED:0.31 QI:533|0.75|0.66|1|0.5|0.66|9|338|287; (*GB) gi|255583670|ref|XP_002532589.1| (e_value=4e-73) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G10250.2 (e_value=3e-65) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc01g005640.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:446769-454457 transcript_region:SL2.40ch01:446769..454457+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00036902g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|118 NbS00036902g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|200; (*GB) gi|255644916|gb|ACU22958.1| (e_value=1e-63) unknown [Glycine max];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=1e-46) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=8e-48) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc02g090950.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46991663-46992331 transcript_region:SL2.40ch02:46991663..46992331+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00025291g0004.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0|7|0|920; (*GB) gi|255537715|ref|XP_002509924.1| (e_value=0.0) serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|P25848|PHY1_CERPU (e_value=7e-29) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT1G64300.2 (e_value=0.0) | Symbols: | Protein kinase family protein | chr1:23863543-23865776 FORWARD LENGTH=717;; (*ITAG) Solyc08g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2676854-2680659 transcript_region:SL2.40ch08:2676854..2680659+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KSS6_ARALY); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0006468 NbS00054936g0008.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|0.5|0.33|3|0|387; (*GB) gi|49240345|gb|AAT58045.1| (e_value=1e-58) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=2e-35) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=1e-36) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=4e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00054936g0009.1 protein AED:0.80 eAED:0.97 QI:0|0|0|0.33|0.5|0.66|3|0|133; (*GB) gi|49240345|gb|AAT58045.1| (e_value=5e-50) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q6VVA6|HAK1_ORYSJ (e_value=2e-34) Potassium transporter 1 OS=Oryza sativa subsp. japonica GN=HAK1 PE=1 SV=2;; (*TAIR) AT4G13420.1 (e_value=5e-34) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005670.1.1 (e_value=3e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:358968-363938 transcript_region:SL2.40ch12:358968..363938+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T6Z3_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00010920g0009.1 protein AED:0.15 eAED:0.15 QI:97|1|1|1|0.83|0.85|7|480|394; (*GB) gi|225461518|ref|XP_002282613.1| (e_value=1e-122) PREDICTED: ribosomal protein L11 methyltransferase [Vitis vinifera];; (*SWP) sp|Q478R6|PRMA_DECAR (e_value=4e-53) Ribosomal protein L11 methyltransferase OS=Dechloromonas aromatica (strain RCB) GN=prmA PE=3 SV=1;; (*TAIR) AT5G53920.1 (e_value=6e-110) | Symbols: | ribosomal protein L11 methyltransferase-related | chr5:21892124-21894087 FORWARD LENGTH=371;; (*ITAG) Solyc07g062930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62776691-62781667 transcript_region:SL2.40ch07:62776691..62781667- go_terms:GO:0008757 functional_description:"Ribosomal protein L11 methyltransferase-like protein (AHRD V1 **** Q9FN34_ARATH); contains Interpro domain(s) IPR010456 Ribosomal L11 methyltransferase "; GO:0008757 NbS00010920g0010.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|563|579; (*GB) gi|225461520|ref|XP_002285142.1| (e_value=3e-28) PREDICTED: uncharacterized protein LOC100248740 [Vitis vinifera];; (*TAIR) AT5G53930.1 (e_value=2e-16) | Symbols: | unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21894387-21896283 REVERSE LENGTH=529;; (*ITAG) Solyc07g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62771612-62776253 transcript_region:SL2.40ch07:62771612..62776253+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 *-*- Q9FN33_ARATH)"; NbS00047106g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|560; (*GB) gi|364285585|gb|AEW48210.1| (e_value=0.0) disease resistance protein RGH5 [Solanum huancabambense];; (*SWP) sp|Q6L406|R1B19_SOLDE (e_value=2e-76) Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2;; (*TAIR) AT1G50180.1 (e_value=3e-65) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc12g006040.1.1 (e_value=1e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:633525-634647 transcript_region:SL2.40ch12:633525..634647- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00021216g0005.1 protein AED:0.05 eAED:0.11 QI:0|0.33|0|1|0.33|0.5|4|0|900; (*GB) gi|255574286|ref|XP_002528057.1| (e_value=0.0) DNA ligase I, putative [Ricinus communis];; (*SWP) sp|Q86KS1|DCR1_DICDI (e_value=2e-57) DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1;; (*TAIR) AT1G66730.1 (e_value=0.0) | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396;; (*ITAG) Solyc02g091120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47101422-47120748 transcript_region:SL2.40ch02:47101422..47120748- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9SPY8_RICCO); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00020211g0004.1 protein AED:0.07 eAED:0.07 QI:205|1|1|1|1|1|6|283|221; (*GB) gi|357489905|ref|XP_003615240.1| (e_value=4e-121) Hydrolase, putative [Medicago truncatula];; (*SWP) sp|Q94AC1|STR6_ARATH (e_value=1e-17) Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1;; (*TAIR) AT4G24380.1 (e_value=2e-113) | Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234;; (*ITAG) Solyc04g074950.2.1 (e_value=6e-142) genomic_reference:SL2.40ch04 gene_region:58430494-58435380 transcript_region:SL2.40ch04:58430494..58435380+ functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; NbS00033922g0006.1 protein AED:0.16 eAED:0.16 QI:60|1|0|1|1|0.5|2|0|69; (*GB) gi|379987682|gb|AFD22621.1| (e_value=1e-40) dicer-like 4 protein [Nicotiana attenuata];; (*ITAG) Solyc07g005030.2.1 (e_value=1e-39) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00033922g0005.1 protein AED:0.38 eAED:0.35 QI:140|1|0.33|1|0.5|1|3|0|149; (*GB) gi|379987682|gb|AFD22621.1| (e_value=2e-92) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|P84634|DCL4_ARATH (e_value=2e-47) Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2;; (*TAIR) AT5G20320.1 (e_value=2e-48) | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1702;; (*ITAG) Solyc07g005030.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00050627g0003.1 protein AED:0.03 eAED:0.03 QI:251|1|0.66|1|1|0.66|3|0|132; (*GB) gi|359476253|ref|XP_002280119.2| (e_value=2e-66) PREDICTED: serine/threonine-protein kinase CBK1 [Vitis vinifera];; (*SWP) sp|Q54Y26|NDRA_DICDI (e_value=5e-26) Probable serine/threonine-protein kinase ndrA OS=Dictyostelium discoideum GN=ndrA PE=3 SV=1;; (*TAIR) AT4G33080.1 (e_value=4e-64) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=519;; (*ITAG) Solyc08g062670.2.1 (e_value=1e-73) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020016g0006.1 protein AED:0.14 eAED:0.14 QI:217|1|1|1|0.75|0.77|9|384|479; (*GB) gi|193290720|gb|ACF17668.1| (e_value=0.0) putative aminotransferase [Capsicum annuum];; (*SWP) sp|Q940M2|AGT21_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1;; (*TAIR) AT4G39660.1 (e_value=0.0) | Symbols: AGT2 | alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476;; (*ITAG) Solyc04g054310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51438793-51444211 transcript_region:SL2.40ch04:51438793..51444211+ go_terms:GO:0008453 functional_description:"Alanine-glyoxylate aminotransferase (AHRD V1 **** D2KZ10_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0008453 NbS00020016g0007.1 protein AED:0.06 eAED:0.06 QI:424|1|0.88|1|0.87|0.77|9|581|411; (*GB) gi|100288|pir||S17715 (e_value=0.0) transcription activator TGA1a - tobacco;; (*SWP) sp|P14232|TGA1A_TOBAC (e_value=4e-177) TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1;; (*TAIR) AT5G65210.5 (e_value=5e-133) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g054320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51444423-51451664 transcript_region:SL2.40ch04:51444423..51451664- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00024717g0003.1 protein AED:0.07 eAED:0.07 QI:283|1|1|1|0.6|0.83|6|194|188; (*GB) gi|225448423|ref|XP_002271201.1| (e_value=5e-74) PREDICTED: probable DNA replication complex GINS protein PSF3 [Vitis vinifera];; (*SWP) sp|Q9UTC3|PSF3_SCHPO (e_value=7e-16) DNA replication complex GINS protein psf3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psf3 PE=2 SV=1;; (*TAIR) AT3G55490.1 (e_value=3e-67) | Symbols: | GINS complex protein | chr3:20572171-20573415 REVERSE LENGTH=185;; (*ITAG) Solyc05g008620.2.1 (e_value=3e-120) genomic_reference:SL2.40ch05 gene_region:2927798-2931476 transcript_region:SL2.40ch05:2927798..2931476- functional_description:"DNA replication complex GINS protein psf3 (AHRD V1 ***- C5FUE7_NANOT); contains Interpro domain(s) IPR010492 GINS complex, Psf3 component "; NbS00026404g0001.1 protein AED:0.20 eAED:0.67 QI:0|0|0|1|0|0|3|0|72 NbC24394344g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|225435592|ref|XP_002283248.1| (e_value=5e-74) PREDICTED: octanoyltransferase [Vitis vinifera];; (*SWP) sp|Q9SXP7|LIPB_ARATH (e_value=7e-73) Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=1 SV=1;; (*TAIR) AT1G04640.2 (e_value=5e-74) | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292541-1293248 FORWARD LENGTH=235;; (*ITAG) Solyc02g077460.1.1 (e_value=5e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36971744-36972394 transcript_region:SL2.40ch02:36971744..36972394- go_terms:GO:0033819 functional_description:"Octanoyltransferase (AHRD V1 ***- A9AV27_HERA2); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0033819 NbS00017226g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0.33|1|0.5|0.33|3|10|347; (*GB) gi|224101533|ref|XP_002312320.1| (e_value=4e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSN7|BH147_ARATH (e_value=3e-43) Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1;; (*TAIR) AT3G17100.2 (e_value=2e-44) | Symbols: | sequence-specific DNA binding transcription factors | chr3:5831552-5832244 FORWARD LENGTH=230;; (*ITAG) Solyc01g058670.2.1 (e_value=3e-85) genomic_reference:SL2.40ch01 gene_region:60363932-60365436 transcript_region:SL2.40ch01:60363932..60365436- go_terms:GO:0003713,GO:0005504 functional_description:"Transcription factor (AHRD V1 *-** D7L4N5_ARALY)"; GO:0003713,GO:0005504 NbS00015351g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.63|0.58|1|0.45|0.66|12|0|449; (*GB) gi|14211574|dbj|BAB56105.1| (e_value=0.0) Na H-antiportor [Petunia x hybrida];; (*SWP) sp|Q56XP4|NHX2_ARATH (e_value=0.0) Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2;; (*TAIR) AT3G05030.1 (e_value=0.0) | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger 2 | chr3:1393456-1396784 REVERSE LENGTH=546;; (*ITAG) Solyc01g067710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69042078-69046945 transcript_region:SL2.40ch01:69042078..69046945+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA3_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00012916g0006.1 protein AED:0.65 eAED:0.92 QI:0|0|0|0.66|0.5|0.66|3|0|165; (*GB) gi|255563040|ref|XP_002522524.1| (e_value=2e-38) chaperone atp11p, putative [Ricinus communis];; (*TAIR) AT2G34050.1 (e_value=1e-36) | Symbols: | INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248;; (*ITAG) Solyc02g031770.2.1 (e_value=2e-45) genomic_reference:SL2.40ch02 gene_region:17618833-17623195 transcript_region:SL2.40ch02:17618833..17623195+ go_terms:GO:0005515 functional_description:"ATP synthase mitochondrial F1 complex assembly factor 1 (AHRD V1 **-- ATPF1_HUMAN); contains Interpro domain(s) IPR010591 ATP11 "; GO:0005515 NbS00027531g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|452; (*GB) gi|75202626|sp|Q9SBQ8.1|KGLT_PETHY (e_value=0.0) RecName: Full=Kaempferol 3-O-beta-D-galactosyltransferase; Short=F3GalTase; Flags: Precursor;; (*SWP) sp|Q9SBQ8|KGLT_PETHY (e_value=0.0) Kaempferol 3-O-beta-D-galactosyltransferase OS=Petunia hybrida PE=1 SV=1;; (*TAIR) AT5G17050.1 (e_value=2e-155) | Symbols: UGT78D2 | UDP-glucosyl transferase 78D2 | chr5:5607828-5609392 REVERSE LENGTH=460;; (*ITAG) Solyc07g006720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1568847-1571455 transcript_region:SL2.40ch07:1568847..1571455+ go_terms:GO:0080043 functional_description:"UDP flavonoid 3-O-glucosyltransferase (Fragment) (AHRD V1 **** B5AIT4_IPOTF); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00027531g0006.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.25|1|0.66|0.75|4|0|229; (*GB) gi|356531168|ref|XP_003534150.1| (e_value=2e-44) PREDICTED: MATE efflux family protein DTX1-like [Glycine max];; (*SWP) sp|Q9SIA4|MATE5_ARATH (e_value=2e-23) MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=2 SV=1;; (*TAIR) AT5G52450.1 (e_value=6e-39) | Symbols: | MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486;; (*ITAG) Solyc07g006730.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:1574894-1577909 transcript_region:SL2.40ch07:1574894..1577909+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_CITK8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00010813g0006.1 protein AED:0.23 eAED:0.23 QI:192|1|1|1|0|0|5|371|206; (*GB) gi|224101137|ref|XP_002312157.1| (e_value=8e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40095.1 (e_value=4e-60) | Symbols: | Alpha/beta hydrolase related protein | chr2:16743107-16744455 FORWARD LENGTH=209;; (*ITAG) Solyc05g052750.2.1 (e_value=8e-78) genomic_reference:SL2.40ch05 gene_region:62084392-62086301 transcript_region:SL2.40ch05:62084392..62086301- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KX74_ARALY)"; NbS00059855g0001.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.25|1|1|4|0|192; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc04g051520.1.1 (e_value=6e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49918628-49922700 transcript_region:SL2.40ch04:49918628..49922700+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00052520g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|98647786|gb|ABF58910.1| (e_value=2e-163) matrix metalloprotease 1 [Nicotiana tabacum];; (*SWP) sp|P29136|MEP1_SOYBN (e_value=3e-87) Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT1G24140.1 (e_value=2e-131) | Symbols: | Matrixin family protein | chr1:8536131-8537285 REVERSE LENGTH=384;; (*ITAG) Solyc05g006360.1.1 (e_value=7e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1017336-1018409 transcript_region:SL2.40ch05:1017336..1018409+ go_terms:GO:0004222 functional_description:"Matrix metalloproteinase (AHRD V1 **-- B7TVN4_PINTA); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin "; GO:0004222 NbS00000414g0010.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0|3|0|367; (*GB) gi|148611499|gb|ABQ95989.1| (e_value=0.0) phospholipase A1 [Capsicum annuum];; (*SWP) sp|O49523|DSEL_ARATH (e_value=2e-120) Phospholipase A1-IIgamma OS=Arabidopsis thaliana GN=DSEL PE=1 SV=1;; (*TAIR) AT4G18550.1 (e_value=1e-121) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36938527-36940052 transcript_region:SL2.40ch02:36938527..36940052- go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00013421g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|130826|sp|P08299.1|PR1A_TOBAC (e_value=5e-89) RecName: Full=Pathogenesis-related protein 1A; Short=PR-1A; Flags: Precursor;; (*SWP) sp|P08299|PR1A_TOBAC (e_value=1e-90) Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G33720.1 (e_value=1e-55) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00013421g0005.1 protein AED:0.57 eAED:0.94 QI:74|0.2|0|0.5|0.4|0.33|6|0|138 NbS00000250g0008.1 protein AED:0.32 eAED:0.32 QI:125|0.66|0.71|0.85|1|1|7|0|184; (*GB) gi|269969912|gb|ACZ54945.1| (e_value=5e-73) type 2 histone deacetylase a [Nicotiana tabacum];; (*SWP) sp|Q6V9I6|HDT1_SOLCH (e_value=4e-44) Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1;; (*TAIR) AT5G03740.1 (e_value=1e-24) | Symbols: HD2C, HDT3 | histone deacetylase 2C | chr5:981994-983961 FORWARD LENGTH=294;; (*ITAG) Solyc10g085560.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64003050-64006740 transcript_region:SL2.40ch10:64003050..64006740- go_terms:GO:0005622 functional_description:"Histone deacetylase 2a-like (AHRD V1 ***- Q2XTE1_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00000250g0009.1 protein AED:0.09 eAED:0.09 QI:133|0.66|0.75|1|0|0|4|82|91; (*GB) gi|353731074|ref|NP_001238799.1| (e_value=3e-35) delta14-sterol reductase [Solanum lycopersicum];; (*SWP) sp|Q9LDR4|ERG24_ARATH (e_value=3e-19) Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2;; (*TAIR) AT3G52940.2 (e_value=3e-21) | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis ERG4/ERG24 family | chr3:19631030-19633112 REVERSE LENGTH=262;; (*ITAG) Solyc09g009040.2.1 (e_value=7e-38) genomic_reference:SL2.40ch09 gene_region:2385547-2393745 transcript_region:SL2.40ch09:2385547..2393745+ go_terms:GO:0050613 functional_description:"Delta14-sterol reductase (AHRD V1 **** E1AQY4_SOLLC); contains Interpro domain(s) IPR001171 Ergosterol biosynthesis ERG4/ERG24 "; GO:0050613 NbS00000250g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.83|0.78|0.89|0.77|0.78|19|437|448; (*GB) gi|238814974|gb|ACR56690.1| (e_value=0.0) enolase [Nicotiana tabacum];; (*SWP) sp|P26300|ENO_SOLLC (e_value=0.0) Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1;; (*TAIR) AT2G36530.1 (e_value=0.0) | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444;; (*ITAG) Solyc09g009020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2370061-2375045 transcript_region:SL2.40ch09:2370061..2375045+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00000250g0012.1 protein AED:0.44 eAED:0.57 QI:0|0|0|1|0|0|2|0|68; (*GB) gi|1087017|gb|AAB35284.1| (e_value=1e-24) arabinogalactan-protein [Nicotiana alata];; (*ITAG) Solyc07g053640.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59416586-59418049 transcript_region:SL2.40ch07:59416586..59418049+ functional_description:"Arabinogalactan-protein (AHRD V1 *-*- Q41256_NICAL)"; NbS00030874g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|71 NbS00022095g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|1|1|5|390|499; (*GB) gi|49182344|gb|AAT57674.1| (e_value=0.0) proline oxidase/dehydrogenase 1 [Nicotiana tabacum];; (*SWP) sp|Q6NKX1|PROD2_ARATH (e_value=0.0) Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1;; (*TAIR) AT5G38710.1 (e_value=0.0) | Symbols: | Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476;; (*ITAG) Solyc02g089620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45954478-45956600 transcript_region:SL2.40ch02:45954478..45956600- go_terms:GO:0005515,GO:0004657 functional_description:"Proline dehydrogenase (AHRD V1 **** A1E289_ACTDE); contains Interpro domain(s) IPR015659 Proline oxidase "; GO:0005515,GO:0004657 NbS00037558g0005.1 protein AED:0.15 eAED:0.15 QI:226|1|0.88|1|0.75|0.88|9|0|347; (*GB) gi|225428390|ref|XP_002283597.1| (e_value=4e-172) PREDICTED: bifunctional phosphatase IMPL2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=2e-162) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=2e-163) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g109930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88522523-88527340 transcript_region:SL2.40ch01:88522523..88527340+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7MGB6_ARALY); contains Interpro domain(s) IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase "; GO:0008934 NbS00037558g0002.1 protein AED:0.33 eAED:0.33 QI:0|0.88|0.7|1|1|1|10|0|385; (*GB) gi|24745880|dbj|BAC23035.1| (e_value=0.0) 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum];; (*SWP) sp|Q9MAK9|PS10B_ARATH (e_value=0.0) 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1;; (*TAIR) AT1G45000.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399;; (*ITAG) Solyc01g109940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbC26128793g0002.1 protein AED:0.37 eAED:0.37 QI:0|1|0|1|1|1|2|0|75; (*GB) gi|12006845|gb|AAG44947.1|AF290620_1 (e_value=3e-45) putative PIP2 [Nicotiana glauca];; (*SWP) sp|Q8H5N9|PIP21_ORYSJ (e_value=4e-38) Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1;; (*TAIR) AT2G37170.1 (e_value=5e-38) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc06g011350.2.1 (e_value=2e-38) genomic_reference:SL2.40ch06 gene_region:6572048-6573930 transcript_region:SL2.40ch06:6572048..6573930+ go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00033834g0002.1 protein AED:0.14 eAED:0.44 QI:0|0|0.5|1|1|1|2|235|87 NbS00008548g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|1|1|4|0|353; (*GB) gi|117646985|dbj|BAF36564.1| (e_value=0.0) alternative oxidase [Nicotiana tabacum];; (*SWP) sp|Q41224|AOX1_TOBAC (e_value=0.0) Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1;; (*TAIR) AT3G22370.1 (e_value=1e-176) | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354;; (*ITAG) Solyc08g075540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56877798-56879604 transcript_region:SL2.40ch08:56877798..56879604- go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** Q84V47_SOLLC); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00003967g0005.1 protein AED:0.23 eAED:0.27 QI:66|0.71|0.87|1|0.57|0.62|8|369|265; (*GB) gi|224141873|ref|XP_002324285.1| (e_value=1e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|O95372|LYPA2_HUMAN (e_value=2e-17) Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1;; (*TAIR) AT5G20060.3 (e_value=1e-98) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252;; (*ITAG) Solyc08g067160.2.1 (e_value=1e-130) genomic_reference:SL2.40ch08 gene_region:53325912-53329825 transcript_region:SL2.40ch08:53325912..53329825+ go_terms:GO:0008474,GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0008474,GO:0004622 NbS00045526g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|218; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=9e-86) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=1e-77) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=1e-78) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc10g083750.1.1 (e_value=3e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62830767-62834436 transcript_region:SL2.40ch10:62830767..62834436- go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00001852g0015.1 protein AED:0.16 eAED:0.16 QI:152|1|1|1|1|1|10|313|410; (*GB) gi|78191456|gb|ABB29949.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q54KZ8|EIF3M_DICDI (e_value=3e-65) Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1;; (*TAIR) AT5G15610.2 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr5:5079579-5081929 FORWARD LENGTH=413;; (*ITAG) Solyc02g089070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45554788-45559960 transcript_region:SL2.40ch02:45554788..45559960+ functional_description:"Eukaryotic translation initiation factor 3 subunit M (AHRD V1 ***- B2WFL9_PYRTR); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbS00001852g0016.1 protein AED:0.19 eAED:0.19 QI:183|1|1|1|1|0.8|5|240|388; (*GB) gi|255585722|ref|XP_002533543.1| (e_value=3e-164) Esterase PIR7B, putative [Ricinus communis];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=1e-85) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT3G29770.1 (e_value=7e-144) | Symbols: ATMES11, MES11 | methyl esterase 11 | chr3:11648471-11650565 FORWARD LENGTH=390;; (*ITAG) Solyc02g089060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45538678-45544081 transcript_region:SL2.40ch02:45538678..45544081+ go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00001852g0003.1 protein AED:0.27 eAED:0.27 QI:15|0|0.5|1|1|1|2|0|132; (*GB) gi|296084598|emb|CBI25619.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=7e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=2e-27) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00001852g0013.1 protein AED:0.50 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|137; (*ITAG) Solyc02g089090.2.1 (e_value=5e-12) genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00027820g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|98; (*GB) gi|356513949|ref|XP_003525670.1| (e_value=6e-37) PREDICTED: cysteine-rich receptor-like protein kinase 42-like [Glycine max];; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=7e-38) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1;; (*TAIR) AT5G40380.1 (e_value=5e-39) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc02g086590.2.1 (e_value=2e-42) genomic_reference:SL2.40ch02 gene_region:43823654-43827592 transcript_region:SL2.40ch02:43823654..43827592- go_terms:GO:0004672 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672 NbS00001943g0009.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|431; (*GB) gi|260177092|gb|ACX33889.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=0.0) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc06g083700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45324280-45326049 transcript_region:SL2.40ch06:45324280..45326049- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00001943g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|388|80 NbS00001919g0001.1 protein AED:0.22 eAED:0.24 QI:99|0|0.66|1|0|0.33|3|376|249; (*ITAG) Solyc08g005030.1.1 (e_value=1e-81) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:27665-28315 transcript_region:SL2.40ch08:27665..28315+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001919g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|649; (*GB) gi|296278597|gb|ADH04263.1| (e_value=0.0) bHLH2 transcription factor [Nicotiana benthamiana];; (*SWP) sp|Q39204|RAP1_ARATH (e_value=0.0) Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2;; (*TAIR) AT1G32640.1 (e_value=0.0) | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623;; (*ITAG) Solyc08g076930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58035870-58037939 transcript_region:SL2.40ch08:58035870..58037939+ go_terms:GO:0016563,GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00015570g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|205; (*GB) gi|255566434|ref|XP_002524202.1| (e_value=5e-94) Zeamatin precursor, putative [Ricinus communis];; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=1e-72) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT5G02140.1 (e_value=4e-87) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:423384-424437 FORWARD LENGTH=294;; (*ITAG) Solyc05g053020.2.1 (e_value=5e-117) genomic_reference:SL2.40ch05 gene_region:62326978-62328642 transcript_region:SL2.40ch05:62326978..62328642+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9LZL8_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00015570g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|656; (*GB) gi|255566440|ref|XP_002524205.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc05g053010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62320694-62322766 transcript_region:SL2.40ch05:62320694..62322766+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00015570g0010.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|3|0|111; (*SWP) sp|Q9CAY3|GPAT5_ARATH (e_value=3e-14) Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1;; (*TAIR) AT3G11430.1 (e_value=3e-15) | Symbols: ATGPAT5, GPAT5 | glycerol-3-phosphate acyltransferase 5 | chr3:3595911-3597678 FORWARD LENGTH=502;; (*ITAG) Solyc04g011600.2.1 (e_value=3e-15) genomic_reference:SL2.40ch04 gene_region:4029691-4031884 transcript_region:SL2.40ch04:4029691..4031884+ go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T011_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00030932g0001.1 protein AED:0.01 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|385; (*GB) gi|350539854|ref|NP_001233783.1| (e_value=3e-129) TCP transcription factor 1 [Solanum lycopersicum];; (*SWP) sp|O82277|TCP10_ARATH (e_value=2e-31) Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1;; (*TAIR) AT2G31070.1 (e_value=1e-32) | Symbols: TCP10 | TCP domain protein 10 | chr2:13220984-13222069 REVERSE LENGTH=361;; (*ITAG) Solyc02g077250.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:36822112-36823838 transcript_region:SL2.40ch02:36822112..36823838- functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00032368g0003.1 protein AED:0.28 eAED:0.30 QI:0|0.25|0.2|0.8|0.25|0.4|5|0|151; (*GB) gi|2506931|sp|P80595.2|APY_SOLTU (e_value=2e-63) RecName: Full=Apyrase; AltName: Full=ATP-diphosphatase; AltName: Full=ATP-diphosphohydrolase; AltName: Full=Adenosine diphosphatase; Short=ADPase; Flags: Precursor;; (*SWP) sp|P80595|APY_SOLTU (e_value=5e-65) Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2;; (*TAIR) AT5G18280.1 (e_value=2e-27) | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578;; (*ITAG) Solyc12g098540.1.1 (e_value=2e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64350912-64356556 transcript_region:SL2.40ch12:64350912..64356556- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00009029g0001.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.2|1|1|5|0|227; (*GB) gi|255567695|ref|XP_002524826.1| (e_value=2e-29) DNA repair helicase rad5,16, putative [Ricinus communis];; (*SWP) sp|P31244|RAD16_YEAST (e_value=6e-18) DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1;; (*TAIR) AT1G05120.1 (e_value=2e-29) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc05g044480.2.1 (e_value=1e-35) genomic_reference:SL2.40ch05 gene_region:55714270-55722184 transcript_region:SL2.40ch05:55714270..55722184- go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--* CHD3_DROME); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00024329g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|216; (*GB) gi|224067274|ref|XP_002302442.1| (e_value=2e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|P73212|DFRA_SYNY3 (e_value=2e-19) Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dfrA PE=3 SV=1;; (*TAIR) AT4G33360.2 (e_value=8e-80) | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16068123-16069374 REVERSE LENGTH=305;; (*ITAG) Solyc12g088880.1.1 (e_value=1e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62523783-62527414 transcript_region:SL2.40ch12:62523783..62527414- go_terms:GO:0044237,GO:0008152 functional_description:"Epimerase/dehydratase (AHRD V1 ***- C7JBC7_ACEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00026893g0003.1 protein AED:0.07 eAED:0.07 QI:281|1|1|1|1|1|2|146|323; (*GB) gi|224066893|ref|XP_002302266.1| (e_value=5e-169) predicted protein [Populus trichocarpa];; (*TAIR) AT1G22030.1 (e_value=7e-111) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7759337-7760415 REVERSE LENGTH=333;; (*ITAG) Solyc11g013330.1.1 (e_value=2e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6320973-6322514 transcript_region:SL2.40ch11:6320973..6322514+ functional_description:"F2E2.8 (AHRD V1 ***- Q9LM58_ARATH)"; NbS00018778g0008.1 protein AED:0.00 eAED:0.00 QI:59|0.87|0.88|1|1|1|9|199|638; (*GB) gi|296089783|emb|CBI39602.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5EA50|RABEK_BOVIN (e_value=2e-40) Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1;; (*TAIR) AT1G18610.1 (e_value=2e-55) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:6405779-6408831 FORWARD LENGTH=556;; (*ITAG) Solyc01g100600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82339251-82342726 transcript_region:SL2.40ch01:82339251..82342726- functional_description:"Kelch domain-containing protein 3 (AHRD V1 *--- B0W5R4_CULQU); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00018778g0007.1 protein AED:0.20 eAED:0.20 QI:206|0.91|0.84|1|1|1|13|0|590; (*GB) gi|225450573|ref|XP_002281965.1| (e_value=0.0) PREDICTED: solute carrier family 40 member 1 [Vitis vinifera];; (*SWP) sp|Q8W4E7|S40A3_ARATH (e_value=0.0) Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1;; (*TAIR) AT5G26820.1 (e_value=0.0) | Symbols: ATIREG3, MAR1, RTS3, IREG3 | iron-regulated protein 3 | chr5:9433858-9437005 FORWARD LENGTH=598;; (*ITAG) Solyc01g100610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82351316-82358072 transcript_region:SL2.40ch01:82351316..82358072- go_terms:GO:0005215 functional_description:"Solute carrier family 40 member 1 (AHRD V1 **-- S40A1_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005215 NbS00015027g0004.1 protein AED:0.08 eAED:0.08 QI:242|1|1|1|0.88|0.8|10|271|290; (*GB) gi|255560125|ref|XP_002521080.1| (e_value=9e-108) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NLW5|XRI1_ARATH (e_value=3e-85) Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2;; (*TAIR) AT5G48720.2 (e_value=3e-86) | Symbols: XRI, XRI1 | x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300;; (*ITAG) Solyc09g082490.2.1 (e_value=1e-180) genomic_reference:SL2.40ch09 gene_region:63598105-63602048 transcript_region:SL2.40ch09:63598105..63602048- go_terms:GO:0005515 functional_description:"Os04g0376600 protein (Fragment) (AHRD V1 *--- C7J0T0_ORYSJ)"; GO:0005515 NbS00019664g0015.1 protein AED:0.12 eAED:0.12 QI:63|1|1|1|0.71|0.62|8|233|304; (*GB) gi|7331193|gb|AAF60315.1|AF236107_1 (e_value=1e-154) putative purple acid phosphatase precursor [Ipomoea batatas];; (*SWP) sp|Q9SCX8|PPA17_ARATH (e_value=1e-140) Purple acid phosphatase 17 OS=Arabidopsis thaliana GN=PAP17 PE=2 SV=1;; (*TAIR) AT3G17790.1 (e_value=8e-142) | Symbols: ATACP5, ATPAP17, PAP17 | purple acid phosphatase 17 | chr3:6089779-6090988 FORWARD LENGTH=338;; (*ITAG) Solyc03g098010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53809153-53811597 transcript_region:SL2.40ch03:53809153..53811597+ go_terms:GO:0004722 functional_description:"Acid phosphatase (AHRD V1 **** B9XQU4_9BACT); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00019664g0014.1 protein AED:0.29 eAED:0.30 QI:0|1|0.85|1|1|1|7|0|403; (*GB) gi|224118020|ref|XP_002317713.1| (e_value=1e-180) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=2e-40) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT1G73480.1 (e_value=2e-176) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27629266-27632486 FORWARD LENGTH=463;; (*ITAG) Solyc03g098020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00019664g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|1|1|1|5|0|252; (*GB) gi|224118024|ref|XP_002317714.1| (e_value=8e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84MA2|IP5P1_ARATH (e_value=5e-26) Type I inositol 1,4,5-trisphosphate 5-phosphatase 1 OS=Arabidopsis thaliana GN=IP5P1 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=1e-28) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc03g098030.2.1 (e_value=8e-58) genomic_reference:SL2.40ch03 gene_region:53828514-53831008 transcript_region:SL2.40ch03:53828514..53831008+ go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00019664g0012.1 protein AED:0.36 eAED:0.55 QI:0|0|0|1|0|0|2|0|99 NbS00053020g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|194; (*GB) gi|351724405|ref|NP_001235009.1| (e_value=5e-75) uncharacterized protein LOC100500228 [Glycine max];; (*TAIR) AT2G36145.1 (e_value=2e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15168571-15169373 FORWARD LENGTH=186;; (*ITAG) Solyc09g010120.2.1 (e_value=5e-109) genomic_reference:SL2.40ch09 gene_region:3499761-3502328 transcript_region:SL2.40ch09:3499761..3502328- functional_description:"Unknown Protein (AHRD V1)"; NbS00053020g0014.1 protein AED:0.17 eAED:0.17 QI:230|0.9|0.90|1|0.7|0.72|11|376|361; (*GB) gi|359481615|ref|XP_002282010.2| (e_value=0.0) PREDICTED: sorting nexin-1 [Vitis vinifera];; (*SWP) sp|Q9FG38|SNX1_ARATH (e_value=0.0) Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1;; (*TAIR) AT5G06140.1 (e_value=0.0) | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:1856212-1858752 REVERSE LENGTH=402;; (*ITAG) Solyc09g010130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3503323-3510006 transcript_region:SL2.40ch09:3503323..3510006- go_terms:GO:0007154 functional_description:"Sorting nexin 1 (AHRD V1 ***- Q70YZ8_BRAOL); contains Interpro domain(s) IPR015404 Vps5 C-terminal "; GO:0007154 NbS00053020g0009.1 protein AED:0.21 eAED:0.21 QI:276|1|1|1|0.85|0.75|8|252|316; (*GB) gi|225440823|ref|XP_002282029.1| (e_value=5e-149) PREDICTED: uncharacterized protein LOC100261394 [Vitis vinifera];; (*TAIR) AT5G06130.2 (e_value=5e-134) | Symbols: | chaperone protein dnaJ-related | chr5:1853754-1855763 REVERSE LENGTH=315;; (*ITAG) Solyc09g010110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3492711-3497716 transcript_region:SL2.40ch09:3492711..3497716- functional_description:"Chaperone protein dnaJ-like (AHRD V1 **-- Q6H3Y3_ORYSJ)"; NbS00025454g0009.1 protein AED:0.25 eAED:0.25 QI:213|0.75|0.6|1|0.75|0.6|5|0|496; (*GB) gi|225425873|ref|XP_002266342.1| (e_value=1e-168) PREDICTED: uncharacterized protein LOC100240965 [Vitis vinifera];; (*TAIR) AT1G67570.1 (e_value=5e-145) | Symbols: | Protein of unknown function (DUF3537) | chr1:25325318-25326938 FORWARD LENGTH=456;; (*ITAG) Solyc04g045310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31475062-31477796 transcript_region:SL2.40ch04:31475062..31477796- functional_description:"Extracellular ligand-gated ion channel (AHRD V1 **-- D7LAY2_ARALY)"; NbS00025454g0010.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|53749448|gb|AAU90304.1| (e_value=6e-26) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc09g059680.1.1 (e_value=6e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00025454g0004.1 protein AED:0.39 eAED:0.75 QI:0|0|0|1|1|1|2|0|183; (*ITAG) Solyc10g047840.1.1 (e_value=2e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00025454g0111.1 protein AED:0.25 eAED:0.22 QI:95|1|0.6|1|1|1|5|0|227 NbS00025454g0112.1 protein AED:0.28 eAED:0.28 QI:7|0.87|0.82|1|0.43|0.58|17|230|537 NbS00015540g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|0.5|0.4|5|0|348; (*GB) gi|584864|sp|P37121.1|C76A1_SOLME (e_value=3e-156) RecName: Full=Cytochrome P450 76A1; AltName: Full=CYPLXXVIA1; AltName: Full=Cytochrome P-450EG8;; (*SWP) sp|P37121|C76A1_SOLME (e_value=8e-158) Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=2e-72) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc10g083700.2.1 (e_value=8e-146) genomic_reference:SL2.40ch10 gene_region:62792950-62794747 transcript_region:SL2.40ch10:62792950..62794747- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00028207g0007.1 protein AED:0.25 eAED:0.26 QI:109|0.87|0.77|1|1|1|9|230|261; (*GB) gi|356543664|ref|XP_003540280.1| (e_value=6e-127) PREDICTED: dnaJ homolog subfamily C member 8-like [Glycine max];; (*SWP) sp|O75937|DNJC8_HUMAN (e_value=1e-22) DnaJ homolog subfamily C member 8 OS=Homo sapiens GN=DNAJC8 PE=1 SV=2;; (*TAIR) AT5G22080.1 (e_value=1e-113) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:7310600-7313540 REVERSE LENGTH=246;; (*ITAG) Solyc11g071930.1.1 (e_value=4e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52334894-52341200 transcript_region:SL2.40ch11:52334894..52341200- go_terms:GO:0031072 functional_description:"DnaJ homolog subfamily C member 8 (AHRD V1 ***- C1BZG1_ESOLU); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00028207g0010.1 protein AED:0.37 eAED:0.52 QI:0|0|0|0.66|0|0|3|0|72 NbS00005238g0013.1 protein AED:0.00 eAED:0.00 QI:98|1|1|1|1|1|2|339|79; (*ITAG) Solyc07g054060.2.1 (e_value=2e-17) genomic_reference:SL2.40ch07 gene_region:59779016-59780307 transcript_region:SL2.40ch07:59779016..59780307+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005238g0014.1 protein AED:0.42 eAED:0.50 QI:0|0|0|1|1|1|3|0|172; (*GB) gi|224124540|ref|XP_002319357.1| (e_value=5e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT1G03650.1 (e_value=2e-74) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:910249-911103 REVERSE LENGTH=158;; (*ITAG) Solyc12g010680.1.1 (e_value=6e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3618709-3620479 transcript_region:SL2.40ch12:3618709..3620479+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine acetyltransferase (AHRD V1 **** D2RGT9_ARCPA); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00043261g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.81|0.76|0.94|0.93|0.82|17|257|1090; (*GB) gi|255567689|ref|XP_002524823.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=0.0) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58050410-58054055 transcript_region:SL2.40ch07:58050410..58054055- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00021956g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|0.66|3|0|354; (*GB) gi|225445348|ref|XP_002281595.1| (e_value=6e-102) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera];; (*TAIR) AT1G80400.1 (e_value=2e-88) | Symbols: | RING/U-box superfamily protein | chr1:30225864-30227360 FORWARD LENGTH=407;; (*ITAG) Solyc12g006940.1.1 (e_value=2e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1371355-1374865 transcript_region:SL2.40ch12:1371355..1374865+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00029908g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|363; (*GB) gi|255587651|ref|XP_002534343.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=5e-107) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT1G52540.1 (e_value=2e-111) | Symbols: | Protein kinase superfamily protein | chr1:19570298-19571884 REVERSE LENGTH=350;; (*ITAG) Solyc07g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1469689-1473103 transcript_region:SL2.40ch07:1469689..1473103+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B9IM85_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033010g0001.1 protein AED:0.70 eAED:0.73 QI:0|-1|0|1|-1|1|1|0|72 NbS00010692g0001.1 protein AED:0.04 eAED:0.04 QI:197|0|0.5|1|0|0.5|2|134|432 NbS00010692g0006.1 protein AED:0.12 eAED:0.13 QI:782|0.75|0.76|1|1|1|17|0|1369; (*GB) gi|359490548|ref|XP_002267012.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267290 [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=7e-100) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT1G65780.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24462958-24466888 REVERSE LENGTH=1065;; (*ITAG) Solyc03g031910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8650616-8654786 transcript_region:SL2.40ch03:8650616..8654786- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00010692g0017.1 protein AED:0.14 eAED:0.14 QI:341|1|0.92|1|0.76|0.78|14|1081|414; (*GB) gi|60617257|gb|AAX31277.1| (e_value=0.0) MLO1 [Capsicum annuum];; (*SWP) sp|Q94KB7|MLO6_ARATH (e_value=1e-178) MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2;; (*TAIR) AT1G61560.1 (e_value=9e-180) | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO family protein | chr1:22708875-22712032 REVERSE LENGTH=583;; (*ITAG) Solyc06g010030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:4786764-4792828 transcript_region:SL2.40ch06:4786764..4792828+ go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010692g0008.1 protein AED:0.09 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|171; (*GB) gi|357453827|ref|XP_003597194.1| (e_value=5e-22) Protein transport protein Sec61 beta subunit [Medicago truncatula];; (*TAIR) AT5G60460.1 (e_value=3e-22) | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr5:24317590-24317919 REVERSE LENGTH=109;; (*ITAG) Solyc03g116990.1.1 (e_value=5e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:60310273-60310602 transcript_region:SL2.40ch03:60310273..60310602- functional_description:"Protein transport protein Sec61 beta subunit (AHRD V1 *-*- B6UEM6_MAIZE); contains Interpro domain(s) IPR016482 Preprotein translocase Sec, Sec61-beta subunit, eukarya "; NbS00025187g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|404; (*GB) gi|225452759|ref|XP_002277734.1| (e_value=2e-138) PREDICTED: uncharacterized protein At5g39865-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=5e-102) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT3G28850.1 (e_value=4e-103) | Symbols: | Glutaredoxin family protein | chr3:10848669-10849955 FORWARD LENGTH=428;; (*ITAG) Solyc02g087850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44693201-44694460 transcript_region:SL2.40ch02:44693201..44694460+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LM49_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00009205g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|255551673|ref|XP_002516882.1| (e_value=2e-60) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q9LIF1|GRS10_ARATH (e_value=3e-54) Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana GN=GRXS10 PE=3 SV=1;; (*TAIR) AT3G21460.1 (e_value=2e-55) | Symbols: | Glutaredoxin family protein | chr3:7557567-7557875 REVERSE LENGTH=102;; (*ITAG) Solyc01g067440.2.1 (e_value=4e-71) genomic_reference:SL2.40ch01 gene_region:68507627-68508260 transcript_region:SL2.40ch01:68507627..68508260- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9MZY7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00009205g0211.1 protein AED:0.27 eAED:0.27 QI:573|1|0.66|1|1|1|3|0|175 NbS00026816g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|48057667|gb|AAT39966.1| (e_value=1e-39) Putative isopenicillin N epimerase, identical [Solanum demissum];; (*TAIR) AT5G26600.1 (e_value=4e-28) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:9377455-9378882 FORWARD LENGTH=475;; (*ITAG) Solyc01g068160.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:69652662-69658418 transcript_region:SL2.40ch01:69652662..69658418- go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase like (AHRD V1 **-- B0JY75_MICAN); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00026816g0004.1 protein AED:0.29 eAED:1.00 QI:84|0|0|1|0.5|0.66|3|360|20 NbS00026816g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|86; (*GB) gi|297743860|emb|CBI36830.3| (e_value=5e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=2e-26) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=2e-27) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc05g013020.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6127918-6129396 transcript_region:SL2.40ch05:6127918..6129396- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN4_PINTA); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00011281g0001.1 protein AED:0.00 eAED:0.00 QI:23|0|0.5|1|0|0.5|2|234|81; (*GB) gi|17373811|sp|O65740.1|DEF2_CAPAN (e_value=2e-24) RecName: Full=Defensin J1-2; Flags: Precursor;; (*SWP) sp|O65740|DEF2_CAPAN (e_value=6e-26) Defensin J1-2 OS=Capsicum annuum PE=1 SV=1;; (*TAIR) AT2G02100.1 (e_value=8e-18) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc04g008470.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:2087094-2089108 transcript_region:SL2.40ch04:2087094..2089108+ go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N682_SOLPI); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00037761g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|151 NbS00037761g0006.1 protein AED:0.24 eAED:0.25 QI:398|0|0.25|1|0.33|0.25|4|0|287; (*GB) gi|147833308|emb|CAN75190.1| (e_value=1e-110) hypothetical protein VITISV_035381 [Vitis vinifera];; (*SWP) sp|Q93ZS4|NIK3_ARATH (e_value=5e-94) Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1;; (*TAIR) AT1G60800.1 (e_value=4e-95) | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383601-22386931 REVERSE LENGTH=632;; (*ITAG) Solyc05g005140.2.1 (e_value=2e-112) genomic_reference:SL2.40ch05 gene_region:126214-131792 transcript_region:SL2.40ch05:126214..131792- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00012589g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|0|0.66|3|0|688; (*GB) gi|359482028|ref|XP_002275906.2| (e_value=0.0) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=5e-35) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT3G11590.1 (e_value=4e-164) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc10g083190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62377262-62380326 transcript_region:SL2.40ch10:62377262..62380326+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbC24662076g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|149 NbS00030612g0004.1 protein AED:0.30 eAED:0.30 QI:227|0.57|0.5|1|0.71|0.87|8|0|308; (*GB) gi|389986101|gb|AFL46168.1| (e_value=1e-174) jasmonate ZIM domain protein c.2 [Nicotiana attenuata];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=4e-22) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.3 (e_value=2e-23) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6121143-6122691 FORWARD LENGTH=319;; (*ITAG) Solyc01g005440.2.1 (e_value=9e-143) genomic_reference:SL2.40ch01 gene_region:308888-312423 transcript_region:SL2.40ch01:308888..312423+ go_terms:GO:0042802 functional_description:"Jasmonate ZIM-domain protein 3 (AHRD V1 **-- B2XVS2_SOLLC); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00017446g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|0.66|1|1|3|0|87; (*GB) gi|3914437|sp|O65812.1|PROF1_HEVBR (e_value=2e-39) RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101;; (*SWP) sp|O65812|PROF1_HEVBR (e_value=6e-41) Profilin-1 OS=Hevea brasiliensis PE=1 SV=1;; (*TAIR) AT4G29340.1 (e_value=4e-38) | Symbols: PRF4 | profilin 4 | chr4:14447718-14448467 FORWARD LENGTH=134;; (*ITAG) Solyc12g044630.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45135507-45136150 transcript_region:SL2.40ch12:45135507..45136150+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q9SMC0_TOBAC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00017446g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc07g056470.2.1 (e_value=9e-14) genomic_reference:SL2.40ch07 gene_region:61620028-61623442 transcript_region:SL2.40ch07:61620028..61623442+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** Q8GVD1_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00016932g0005.1 protein AED:0.08 eAED:0.08 QI:150|0.2|0.33|1|0.4|0.5|6|407|243; (*GB) gi|350537753|ref|NP_001234820.1| (e_value=6e-58) transcription factor HY5 [Solanum lycopersicum];; (*SWP) sp|Q9SM50|HY5_SOLLC (e_value=2e-59) Transcription factor HY5 OS=Solanum lycopersicum GN=HY5 PE=2 SV=1;; (*TAIR) AT5G11260.1 (e_value=5e-37) | Symbols: HY5, TED 5 | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:3593583-3594800 REVERSE LENGTH=168;; (*ITAG) Solyc08g061130.2.1 (e_value=1e-60) genomic_reference:SL2.40ch08 gene_region:43956466-43959939 transcript_region:SL2.40ch08:43956466..43959939- go_terms:GO:0005515,GO:0003690 functional_description:"Transcription factor HY5 (AHRD V1 ***- B6UHC7_MAIZE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003690 NbS00036040g0005.1 protein AED:0.30 eAED:0.30 QI:208|1|1|1|1|1|12|256|341; (*GB) gi|82400120|gb|ABB72799.1| (e_value=4e-175) root border cell-specific protein-like protein [Solanum tuberosum];; (*TAIR) AT3G03890.1 (e_value=8e-150) | Symbols: | FMN binding | chr3:999667-1001996 REVERSE LENGTH=321;; (*ITAG) Solyc03g063240.2.1 (e_value=8e-178) genomic_reference:SL2.40ch03 gene_region:31188554-31197693 transcript_region:SL2.40ch03:31188554..31197693- go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding protein (AHRD V1 ***- D6UPC6_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00036040g0002.1 protein AED:0.51 eAED:0.72 QI:0|0|0|0.57|1|1|7|0|277; (*GB) gi|224123772|ref|XP_002319160.1| (e_value=3e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G03880.1 (e_value=2e-23) | Symbols: | Protein of unknown function (DUF1639) | chr3:998123-999029 FORWARD LENGTH=193; NbS00044601g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|3|470|321; (*GB) gi|255538264|ref|XP_002510197.1| (e_value=9e-130) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G45688.1 (e_value=2e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342;; (*ITAG) Solyc04g078750.2.1 (e_value=1e-155) genomic_reference:SL2.40ch04 gene_region:61007605-61010109 transcript_region:SL2.40ch04:61007605..61010109+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00022238g0005.1 protein AED:0.03 eAED:0.03 QI:5|1|1|1|1|1|2|478|296; (*GB) gi|224074843|ref|XP_002304466.1| (e_value=1e-33) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9FJ90|ERF25_ARATH (e_value=1e-31) Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1;; (*TAIR) AT5G52020.1 (e_value=9e-33) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232;; (*ITAG) Solyc08g080290.2.1 (e_value=2e-54) genomic_reference:SL2.40ch08 gene_region:60773586-60774903 transcript_region:SL2.40ch08:60773586..60774903- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00022238g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0|1|0|0|4|0|354; (*GB) gi|350538321|ref|NP_001234849.1| (e_value=3e-129) hexose transporter 1 [Solanum lycopersicum];; (*SWP) sp|Q41144|STC_RICCO (e_value=3e-128) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT3G19940.1 (e_value=6e-125) | Symbols: | Major facilitator superfamily protein | chr3:6938211-6939975 FORWARD LENGTH=514;; (*ITAG) Solyc08g080300.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60780667-60783435 transcript_region:SL2.40ch08:60780667..60783435+ go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00023067g0015.1 protein AED:0.16 eAED:0.18 QI:0|0.53|0.28|1|0.84|0.85|14|0|1191; (*GB) gi|147783617|emb|CAN68138.1| (e_value=0.0) hypothetical protein VITISV_035655 [Vitis vinifera];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT1G05630.1 (e_value=0.0) | Symbols: AT5PTASE13, 5PTASE13 | Endonuclease/exonuclease/phosphatase family protein | chr1:1682483-1687153 FORWARD LENGTH=1170;; (*ITAG) Solyc12g096660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63821175-63829114 transcript_region:SL2.40ch12:63821175..63829114+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 *-*- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00023067g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|0.75|1|1|4|0|432; (*GB) gi|356573310|ref|XP_003554805.1| (e_value=4e-174) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=4e-99) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=2e-160) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc12g096670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63842032-63845331 transcript_region:SL2.40ch12:63842032..63845331- functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00023067g0021.1 protein AED:0.19 eAED:0.20 QI:0|0.6|0.36|1|0.5|0.45|11|0|663; (*GB) gi|255547313|ref|XP_002514714.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=7e-146) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G18670.1 (e_value=0.0) | Symbols: IBS1 | Protein kinase superfamily protein | chr1:6427242-6430696 REVERSE LENGTH=709;; (*ITAG) Solyc03g115660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59353774-59359756 transcript_region:SL2.40ch03:59353774..59359756+ go_terms:GO:0016301 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00023067g0014.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|458; (*GB) gi|55956986|emb|CAI11457.1| (e_value=0.0) putative glycosyltransferase [Solanum tuberosum];; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=0.0) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=0.0) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc03g115740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00047970g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|5|432|577; (*GB) gi|225428257|ref|XP_002282312.1| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=0.0) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT4G38430.1 (e_value=0.0) | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide exchange factor 1 | chr4:17986643-17988659 FORWARD LENGTH=548;; (*ITAG) Solyc01g111930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89848040-89865881 transcript_region:SL2.40ch01:89848040..89865881- go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 **-* ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00047970g0003.1 protein AED:0.71 eAED:0.86 QI:44|0|0.33|0.66|1|1|3|0|69 NbS00050249g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.2|1|0.25|0.4|5|0|515; (*GB) gi|225428119|ref|XP_002278390.1| (e_value=4e-140) PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Vitis vinifera];; (*SWP) sp|Q8GWA9|PP157_ARATH (e_value=2e-120) Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1;; (*TAIR) AT2G17033.1 (e_value=1e-121) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:7401205-7403207 FORWARD LENGTH=504;; (*ITAG) Solyc10g055700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52712205-52713818 transcript_region:SL2.40ch10:52712205..52713818+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L8Q6_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00050249g0009.1 protein AED:0.01 eAED:0.01 QI:0|0.8|0.5|1|0.8|0.66|6|0|998; (*GB) gi|357444799|ref|XP_003592677.1| (e_value=0.0) mscS family protein, putative [Medicago truncatula];; (*SWP) sp|Q9SYM1|MSL6_ARATH (e_value=0.0) Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1;; (*TAIR) AT1G78610.1 (e_value=0.0) | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856;; (*ITAG) Solyc10g055710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52715600-52720047 transcript_region:SL2.40ch10:52715600..52720047- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B8LXW9_TALSN); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00000843g0012.1 protein AED:0.08 eAED:0.08 QI:18|0.5|0.66|1|0.5|0.33|3|127|292; (*GB) gi|326581036|gb|ADZ96470.1| (e_value=5e-62) HD-Zip subfamily I trancription factor [Helianthus annuus];; (*SWP) sp|Q8LC03|ATB13_ARATH (e_value=2e-47) Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2;; (*TAIR) AT1G69780.1 (e_value=2e-48) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294;; (*ITAG) Solyc02g087840.2.1 (e_value=3e-120) genomic_reference:SL2.40ch02 gene_region:44675284-44676918 transcript_region:SL2.40ch02:44675284..44676918- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00000843g0010.1 protein AED:0.17 eAED:0.17 QI:600|1|1|1|1|1|6|210|460; (*GB) gi|255558222|ref|XP_002520138.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00000843g0011.1 protein AED:0.12 eAED:0.12 QI:97|1|1|1|1|1|5|135|357; (*GB) gi|254692066|emb|CBA10127.1| (e_value=0.0) non-cell-autonomous protein pathway [Nicotiana benthamiana];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=3e-86) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=2e-130) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44664838-44667209 transcript_region:SL2.40ch02:44664838..44667209+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00000843g0009.1 protein AED:0.32 eAED:0.47 QI:0|0|0|0.5|1|1|4|0|212; (*GB) gi|2739168|gb|AAB94619.1| (e_value=4e-71) aldose-1-epimerase-like protein [Nicotiana tabacum];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=7e-28) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=7e-35) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087800.2.1 (e_value=8e-63) genomic_reference:SL2.40ch02 gene_region:44662024-44664509 transcript_region:SL2.40ch02:44662024..44664509+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00031521g0007.1 protein AED:0.07 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|354; (*GB) gi|255555777|ref|XP_002518924.1| (e_value=3e-113) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q84WP6|NAC43_ARATH (e_value=7e-100) NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2;; (*TAIR) AT2G46770.1 (e_value=6e-101) | Symbols: NST1, ANAC043 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr2:19220917-19222822 REVERSE LENGTH=365;; (*ITAG) Solyc08g008660.2.1 (e_value=1e-142) genomic_reference:SL2.40ch08 gene_region:3025338-3026965 transcript_region:SL2.40ch08:3025338..3026965- go_terms:GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PDI0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563 NbS00031521g0014.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0.5|2|0|223; (*GB) gi|359495129|ref|XP_003634920.1| (e_value=7e-72) PREDICTED: LOW QUALITY PROTEIN: laccase-15-like, partial [Vitis vinifera];; (*SWP) sp|Q84J37|LAC15_ARATH (e_value=1e-44) Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1;; (*TAIR) AT5G48100.1 (e_value=1e-45) | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol oxidase family protein | chr5:19489530-19492582 REVERSE LENGTH=565;; (*ITAG) Solyc12g056820.1.1 (e_value=1e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00031521g0012.1 protein AED:0.95 eAED:0.95 QI:0|0|0|0.2|1|1|5|0|203 NbS00031521g0013.1 protein AED:0.38 eAED:0.60 QI:56|0|0|1|0|0|3|0|100; (*GB) gi|225462759|ref|XP_002272618.1| (e_value=2e-23) PREDICTED: laccase-14-like [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=4e-20) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=3e-21) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc12g056820.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00060905g0003.1 protein AED:0.00 eAED:0.00 QI:220|1|1|1|1|1|2|164|175; (*GB) gi|58200407|gb|AAW66459.1| (e_value=4e-55) WRKY transcription factor-b [Capsicum annuum];; (*SWP) sp|Q9S763|WRK45_ARATH (e_value=2e-50) Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1;; (*TAIR) AT3G01970.1 (e_value=2e-51) | Symbols: WRKY45, ATWRKY45 | WRKY DNA-binding protein 45 | chr3:326614-327159 REVERSE LENGTH=147;; (*ITAG) Solyc02g094270.1.1 (e_value=9e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49426008-49428482 transcript_region:SL2.40ch02:49426008..49428482- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- A3FBG3_WHEAT); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00049681g0002.1 protein AED:0.00 eAED:0.00 QI:90|-1|0|1|-1|1|1|368|82 NbS00034907g0003.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|82; (*GB) gi|297841907|ref|XP_002888835.1| (e_value=2e-30) kinase family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G71410.1 (e_value=1e-32) | Symbols: | ARM repeat superfamily protein | chr1:26913070-26917515 REVERSE LENGTH=909;; (*ITAG) Solyc11g042990.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00055016g0002.1 protein AED:0.01 eAED:0.01 QI:310|0|0.66|0.66|1|1|3|601|170; (*GB) gi|20149245|gb|AAM12873.1|AF494090_1 (e_value=5e-78) gibberellin 3-oxidase 2 [Nicotiana sylvestris];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=2e-45) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=1e-46) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=4e-74) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00041151g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|0|425; (*GB) gi|357445667|ref|XP_003593111.1| (e_value=0.0) Tubby-like F-box protein [Medicago truncatula];; (*SWP) sp|Q2QXB2|TLP14_ORYSJ (e_value=0.0) Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1;; (*TAIR) AT1G25280.1 (e_value=0.0) | Symbols: AtTLP10, TLP10 | tubby like protein 10 | chr1:8864961-8866608 FORWARD LENGTH=445;; (*ITAG) Solyc10g046970.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34425969-34428599 transcript_region:SL2.40ch10:34425969..34428599- go_terms:GO:0008020 functional_description:"Tubby-like F-box protein 14 (AHRD V1 ***- TLP14_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0008020 NbS00041151g0003.1 protein AED:0.30 eAED:0.31 QI:308|1|0.5|1|0|0|2|0|358; (*GB) gi|225448099|ref|XP_002276733.1| (e_value=1e-138) PREDICTED: uncharacterized protein LOC100266910 [Vitis vinifera];; (*TAIR) AT1G68140.3 (e_value=5e-94) | Symbols: | Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=334;; (*ITAG) Solyc06g067970.1.1 (e_value=7e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38517926-38518774 transcript_region:SL2.40ch06:38517926..38518774- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00041151g0014.1 protein AED:0.03 eAED:0.03 QI:538|1|0.8|1|1|1|5|569|484; (*GB) gi|225448083|ref|XP_002276310.1| (e_value=0.0) PREDICTED: transmembrane protein 87B [Vitis vinifera];; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=6e-44) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT2G01070.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr2:75596-77625 FORWARD LENGTH=496;; (*ITAG) Solyc10g045600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30297711-30304480 transcript_region:SL2.40ch10:30297711..30304480+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00041151g0002.1 protein AED:0.17 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|225447781|ref|XP_002265790.1| (e_value=1e-50) PREDICTED: uncharacterized protein LOC100267543 [Vitis vinifera];; (*TAIR) AT2G01080.1 (e_value=5e-43) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231;; (*ITAG) Solyc01g104580.2.1 (e_value=4e-58) genomic_reference:SL2.40ch01 gene_region:84798176-84801154 transcript_region:SL2.40ch01:84798176..84801154+ functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 ***- Q10NQ5_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00017889g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|0.5|1|1|2|1069|78 NbS00017889g0008.1 protein AED:0.34 eAED:0.34 QI:143|0.66|0.71|0.85|0.5|0.57|7|0|490; (*GB) gi|255586744|ref|XP_002533992.1| (e_value=8e-61) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G44650.1 (e_value=9e-57) | Symbols: CEST, AtCEST | Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. | chr5:18013396-18015292 FORWARD LENGTH=280;; (*ITAG) Solyc10g005180.2.1 (e_value=2e-82) genomic_reference:SL2.40ch10 gene_region:140704-145668 transcript_region:SL2.40ch10:140704..145668+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU01_ARATH)"; NbS00007650g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|785; (*GB) gi|359481882|ref|XP_002277970.2| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Vitis vinifera];; (*TAIR) AT5G06850.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:2127200-2129584 REVERSE LENGTH=794;; (*ITAG) Solyc03g077920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:42082307-42084676 transcript_region:SL2.40ch03:42082307..42084676- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00007650g0105.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|149 NbS00007650g0110.1 protein AED:0.59 eAED:0.82 QI:0|0|0|0.75|1|1|4|0|97 NbS00024048g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|225435279|ref|XP_002285068.1| (e_value=9e-54) PREDICTED: fasciclin-like arabinogalactan protein 11-like [Vitis vinifera];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=2e-48) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=2e-49) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc09g007650.1.1 (e_value=7e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1212465-1213208 transcript_region:SL2.40ch09:1212465..1213208+ functional_description:"Fasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00022907g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.75|0.6|0.8|1|1|5|0|160; (*GB) gi|224133042|ref|XP_002327947.1| (e_value=2e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2NKV8|GOT1A_BOVIN (e_value=8e-24) Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1;; (*TAIR) AT3G03180.1 (e_value=2e-43) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr3:733531-734421 FORWARD LENGTH=140;; (*ITAG) Solyc02g069610.2.1 (e_value=7e-43) genomic_reference:SL2.40ch02 gene_region:34031707-34035220 transcript_region:SL2.40ch02:34031707..34035220+ go_terms:GO:0005515,GO:0004871 functional_description:"Protein transport protein GOT1 (AHRD V1 **-- GOT1_YEAST); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515,GO:0004871 NbS00062169g0003.1 protein AED:0.30 eAED:0.30 QI:81|0.8|0.83|0.83|1|0.83|6|648|292; (*GB) gi|255583670|ref|XP_002532589.1| (e_value=3e-105) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G10250.2 (e_value=4e-97) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc10g079590.1.1 (e_value=1e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60416931-60420695 transcript_region:SL2.40ch10:60416931..60420695- functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 *-*- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00057956g0001.1 protein AED:0.22 eAED:0.22 QI:93|0.5|1|1|0|0|3|350|17 NbS00002665g0009.1 protein AED:0.13 eAED:0.13 QI:372|0.85|0.62|0.87|0.85|0.87|8|0|700; (*GB) gi|18076585|emb|CAC83606.1| (e_value=0.0) putative receptor-like serine-threonine protein kinase [Solanum tuberosum];; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=1e-162) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3;; (*TAIR) AT4G23180.1 (e_value=9e-164) | Symbols: CRK10, RLK4 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669;; (*ITAG) Solyc02g080070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38960023-38964200 transcript_region:SL2.40ch02:38960023..38964200- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00002665g0008.1 protein AED:0.20 eAED:0.22 QI:0|0.44|0.2|1|0.33|0.5|10|161|655; (*GB) gi|18076585|emb|CAC83606.1| (e_value=0.0) putative receptor-like serine-threonine protein kinase [Solanum tuberosum];; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=1e-124) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3;; (*TAIR) AT4G23180.1 (e_value=8e-126) | Symbols: CRK10, RLK4 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669;; (*ITAG) Solyc02g080070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38960023-38964200 transcript_region:SL2.40ch02:38960023..38964200- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00002665g0104.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|1|2|1093|585 NbS00002665g0121.1 protein AED:0.25 eAED:0.25 QI:0|0.42|0.5|0.62|0.42|0.5|8|814|301 NbS00002665g0122.1 protein AED:0.33 eAED:0.36 QI:206|0.88|0.8|1|0.88|1|10|0|293 NbS00002665g0105.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|192 NbS00002665g0102.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|112 NbS00002665g0120.1 protein AED:0.05 eAED:0.05 QI:118|1|1|1|1|1|4|190|289 NbS00002665g0125.1 protein AED:0.45 eAED:0.61 QI:0|0.25|0.2|1|0|0|5|0|95 NbS00010866g0002.1 protein AED:0.17 eAED:0.17 QI:773|1|0.93|1|0.71|0.73|15|0|533; (*GB) gi|224101261|ref|XP_002312206.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5ZK33|LETM1_CHICK (e_value=4e-94) LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1;; (*TAIR) AT1G65540.1 (e_value=0.0) | Symbols: | LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736;; (*ITAG) Solyc11g008770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2938533-2950401 transcript_region:SL2.40ch11:2938533..2950401- go_terms:GO:0005509 functional_description:"LETM1 and EF-hand domain-containing protein 1, mitochondrial (AHRD V1 *--- LETM1_CHICK); contains Interpro domain(s) IPR011685 LETM1-like "; GO:0005509 NbS00013849g0001.1 protein AED:0.30 eAED:0.30 QI:767|0.77|0.9|1|0.11|0.4|10|521|430; (*GB) gi|359495888|ref|XP_003635109.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Vitis vinifera];; (*SWP) sp|Q8L6Y3|PP396_ARATH (e_value=1e-151) Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1;; (*TAIR) AT5G24830.1 (e_value=8e-153) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8531226-8533266 FORWARD LENGTH=593;; (*ITAG) Solyc03g120070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62621404-62624956 transcript_region:SL2.40ch03:62621404..62624956+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033396g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|234; (*GB) gi|255559635|ref|XP_002520837.1| (e_value=3e-66) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q8L5T5|LBD15_ARATH (e_value=7e-59) LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2;; (*TAIR) AT2G40470.1 (e_value=5e-60) | Symbols: LBD15, ASL11 | LOB domain-containing protein 15 | chr2:16902430-16903546 REVERSE LENGTH=224;; (*ITAG) Solyc06g082430.1.1 (e_value=4e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:44536980-44538550 transcript_region:SL2.40ch06:44536980..44538550- go_terms:GO:0005515 functional_description:"LOB domain protein 25 (AHRD V1 ***- B6U340_MAIZE); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00033396g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|30013673|gb|AAP03879.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 216 [Nicotiana tabacum];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=1e-173) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=1e-174) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g082440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44541823-44543082 transcript_region:SL2.40ch06:44541823..44543082- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 ***- A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00033396g0006.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.25|0|0|4|0|122; (*GB) gi|225445082|ref|XP_002280395.1| (e_value=7e-15) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*TAIR) AT5G25930.1 (e_value=2e-14) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc08g066310.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52047135-52050167 transcript_region:SL2.40ch08:52047135..52050167- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00009090g0025.1 protein AED:0.27 eAED:0.27 QI:171|0.8|0.5|1|0.8|1|6|0|217; (*GB) gi|255549562|ref|XP_002515833.1| (e_value=2e-89) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G21320.2 (e_value=9e-46) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc06g052080.2.1 (e_value=2e-103) genomic_reference:SL2.40ch06 gene_region:32245549-32253815 transcript_region:SL2.40ch06:32245549..32253815+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7KTY4_ARALY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00009090g0026.1 protein AED:0.27 eAED:0.29 QI:272|0.6|0.83|1|0.2|0.5|6|250|207; (*GB) gi|356552743|ref|XP_003544722.1| (e_value=8e-81) PREDICTED: uncharacterized protein LOC100792221 [Glycine max];; (*SWP) sp|Q94A65|STR14_ARATH (e_value=2e-71) Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1;; (*TAIR) AT4G27700.1 (e_value=2e-72) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:13826541-13827673 REVERSE LENGTH=224;; (*ITAG) Solyc06g053140.2.1 (e_value=1e-93) genomic_reference:SL2.40ch06 gene_region:32363112-32365707 transcript_region:SL2.40ch06:32363112..32365707+ functional_description:"Senescence-associated protein DIN1 (AHRD V1 *--- B6U016_MAIZE); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00009090g0022.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|126|104; (*GB) gi|351726704|ref|NP_001235088.1| (e_value=4e-55) uncharacterized protein LOC100305929 [Glycine max];; (*SWP) sp|Q42342|CYB51_ARATH (e_value=6e-50) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT5G53560.1 (e_value=5e-51) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc03g082600.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:46071440-46075109 transcript_region:SL2.40ch03:46071440..46075109- go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** A5Z1Y7_MALDO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00009090g0024.1 protein AED:0.12 eAED:0.16 QI:404|0.5|0.4|1|0.25|0.4|5|0|490; (*GB) gi|225455274|ref|XP_002273720.1| (e_value=0.0) PREDICTED: small G protein signaling modulator 2-like isoform 2 [Vitis vinifera];; (*TAIR) AT3G49350.1 (e_value=8e-132) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539;; (*ITAG) Solyc06g053190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32408377-32414109 transcript_region:SL2.40ch06:32408377..32414109- go_terms:GO:0005622 functional_description:"GTPase activating-like protein (AHRD V1 **-- Q9SG14_ARATH); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00009090g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|459; (*GB) gi|225453553|ref|XP_002262724.1| (e_value=9e-162) PREDICTED: uncharacterized protein LOC100255828 [Vitis vinifera];; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=9e-22) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT2G46620.1 (e_value=6e-154) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491;; (*ITAG) Solyc06g053150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:32367721-32369259 transcript_region:SL2.40ch06:32367721..32369259- go_terms:GO:0005524,GO:0017111 functional_description:"ATPase AAA family protein expressed (AHRD V1 **-- Q8GZX0_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00009090g0028.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.75|0.6|5|359|392; (*GB) gi|225455284|ref|XP_002271615.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264007 [Vitis vinifera];; (*SWP) sp|B4F6J6|ATAD1_XENTR (e_value=5e-98) ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis GN=atad1 PE=2 SV=2;; (*TAIR) AT4G27680.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13821263-13823083 FORWARD LENGTH=398;; (*ITAG) Solyc06g053160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00045965g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.33|3|0|214; (*GB) gi|351713115|gb|EHB16034.1| (e_value=1e-112) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|P29513|TBB5_ARATH (e_value=2e-98) Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1;; (*TAIR) AT1G20010.1 (e_value=1e-99) | Symbols: TUB5 | tubulin beta-5 chain | chr1:6938033-6940481 REVERSE LENGTH=449;; (*ITAG) Solyc10g086760.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64808095-64809620 transcript_region:SL2.40ch10:64808095..64809620- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbC25918569g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbC25918569g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|224119730|ref|XP_002318148.1| (e_value=2e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=2e-126) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072830.1.1 (e_value=5e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53108033-53108953 transcript_region:SL2.40ch11:53108033..53108953+ go_terms:GO:0005975 functional_description:"Chitinase 2 (AHRD V1 ***- B6U7J7_MAIZE); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00053426g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|4|0|331; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=0.0) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=3e-167) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=2e-168) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g049240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56844299-56845615 transcript_region:SL2.40ch07:56844299..56845615+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00010902g0004.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|197308478|gb|ACH60590.1| (e_value=7e-25) beta-tubulin [Pseudotsuga menziesii];; (*SWP) sp|P20364|TBB1_DAUCA (e_value=1e-24) Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2;; (*TAIR) AT1G75780.1 (e_value=5e-25) | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451378-28453602 REVERSE LENGTH=447;; (*ITAG) Solyc03g025730.2.1 (e_value=5e-25) genomic_reference:SL2.40ch03 gene_region:7518579-7522384 transcript_region:SL2.40ch03:7518579..7522384- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00010902g0017.1 protein AED:0.38 eAED:0.48 QI:36|0|0|1|1|1|3|0|160; (*GB) gi|351713115|gb|EHB16034.1| (e_value=3e-61) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|P18025|TBB1_MAIZE (e_value=3e-41) Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1;; (*TAIR) AT5G23860.2 (e_value=2e-39) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc03g025730.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:7518579-7522384 transcript_region:SL2.40ch03:7518579..7522384- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00010902g0016.1 protein AED:0.13 eAED:0.14 QI:0|0.75|0.2|1|0.75|0.6|5|0|427; (*GB) gi|224134853|ref|XP_002321921.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9FF18|C7351_ARATH (e_value=2e-80) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A1 PE=1 SV=1;; (*TAIR) AT5G52400.1 (e_value=0.0) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010902g0014.1 protein AED:0.21 eAED:0.21 QI:161|1|1|1|0|0|5|323|262; (*GB) gi|224137012|ref|XP_002322472.1| (e_value=9e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9HFF2|YL92_SCHPO (e_value=2e-24) Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC683.02c PE=2 SV=1;; (*TAIR) AT5G52380.1 (e_value=2e-90) | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:21261521-21263061 REVERSE LENGTH=268;; (*ITAG) Solyc03g025740.2.1 (e_value=3e-123) genomic_reference:SL2.40ch03 gene_region:7524726-7528765 transcript_region:SL2.40ch03:7524726..7528765+ go_terms:GO:0008270 functional_description:"CCHC zinc finger protein (AHRD V1 *--- Q9GRG8_9TRYP); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00010902g0012.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|207; (*GB) gi|242058991|ref|XP_002458641.1| (e_value=4e-62) hypothetical protein SORBIDRAFT_03g037270 [Sorghum bicolor];; (*SWP) sp|Q02439|E13F_HORVU (e_value=1e-52) Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1;; (*TAIR) AT3G57270.1 (e_value=2e-46) | Symbols: BG1 | beta-1,3-glucanase 1 | chr3:21191336-21193118 REVERSE LENGTH=340;; (*ITAG) Solyc03g025650.1.1 (e_value=4e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7454210-7455317 transcript_region:SL2.40ch03:7454210..7455317+ go_terms:GO:0004338 functional_description:"Glucan-endo-1 3-beta-glucosidase (AHRD V1 **** Q9XFW9_CICAR); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0004338 NbS00010902g0015.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|523; (*GB) gi|16797908|gb|AAL29212.1|AF354454_1 (e_value=0.0) putative acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SMT7|4CLLA_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1;; (*TAIR) AT3G48990.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:18159031-18161294 REVERSE LENGTH=514;; (*ITAG) Solyc03g025720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7514751-7518597 transcript_region:SL2.40ch03:7514751..7518597+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** C3JN12_RHOER); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00014253g0014.1 protein AED:0.49 eAED:0.49 QI:0|0|0.33|0.33|1|1|3|16|167; (*GB) gi|356549489|ref|XP_003543126.1| (e_value=2e-48) PREDICTED: DNA polymerase V-like isoform 1 [Glycine max];; (*TAIR) AT5G64420.1 (e_value=1e-43) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=2e-55) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00014253g0015.1 protein AED:0.18 eAED:0.18 QI:0|0.95|0.90|1|0.85|0.90|22|430|930; (*GB) gi|225425480|ref|XP_002279616.1| (e_value=0.0) PREDICTED: mannosyl-oligosaccharide glucosidase isoform 1 [Vitis vinifera];; (*SWP) sp|Q80UM7|MOGS_MOUSE (e_value=2e-166) Mannosyl-oligosaccharide glucosidase OS=Mus musculus GN=Mogs PE=2 SV=1;; (*TAIR) AT1G67490.1 (e_value=0.0) | Symbols: GCS1, KNF | glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=852;; (*ITAG) Solyc05g015220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10075997-10095708 transcript_region:SL2.40ch05:10075997..10095708- go_terms:GO:0004573,GO:0004558 functional_description:"Mannosyl-oligosaccharide glucosidase (AHRD V1 **** B0WV10_CULQU); contains Interpro domain(s) IPR004888 Glycoside hydrolase, family 63 "; GO:0004573,GO:0004558 NbS00026071g0006.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.25|1|1|4|0|65 NbS00046380g0005.1 protein AED:0.22 eAED:0.23 QI:83|0.87|0.77|1|1|1|9|0|298; (*GB) gi|359496730|ref|XP_003635314.1| (e_value=4e-86) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like [Vitis vinifera];; (*SWP) sp|Q9FL69|AGD5_ARATH (e_value=1e-76) Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1;; (*TAIR) AT5G54310.1 (e_value=1e-77) | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483;; (*ITAG) Solyc03g006610.2.1 (e_value=9e-143) genomic_reference:SL2.40ch03 gene_region:1187252-1192617 transcript_region:SL2.40ch03:1187252..1192617+ go_terms:GO:0032312 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbS00021994g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.2|0|0.83|0.4|0.33|6|0|844; (*GB) gi|28974687|gb|AAO61490.1| (e_value=0.0) arm repeat-containing protein [Nicotiana tabacum];; (*SWP) sp|O22193|PUB4_ARATH (e_value=0.0) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G23140.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826;; (*ITAG) Solyc01g014230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:11880408-11883708 transcript_region:SL2.40ch01:11880408..11883708- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00021994g0012.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|152 NbC23992343g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|214014136|gb|ACJ61779.1| (e_value=1e-39) ELI3, partial [Nicotiana benthamiana];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=1e-28) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G39330.1 (e_value=1e-25) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc11g011340.1.1 (e_value=5e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00060823g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|27374990|dbj|BAC53772.1| (e_value=4e-56) salicylic acid-induced protein kinase [Nicotiana benthamiana];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=1e-51) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=1e-46) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc12g019460.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10385358-10395971 transcript_region:SL2.40ch12:10385358..10395971+ go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase 1 (AHRD V1 ***- Q84MI6_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0006468 NbS00021271g0005.1 protein AED:0.24 eAED:0.25 QI:0|1|0.6|1|1|1|5|0|318; (*GB) gi|356563970|ref|XP_003550230.1| (e_value=9e-120) PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Glycine max];; (*SWP) sp|Q8RXD3|AIP2_ARATH (e_value=1e-103) E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1;; (*TAIR) AT5G20910.1 (e_value=7e-105) | Symbols: AIP2 | RING/U-box superfamily protein | chr5:7092663-7094310 REVERSE LENGTH=310;; (*ITAG) Solyc08g067290.2.1 (e_value=4e-157) genomic_reference:SL2.40ch08 gene_region:53557801-53561293 transcript_region:SL2.40ch08:53557801..53561293- go_terms:GO:0008270 functional_description:"RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021271g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=7e-21) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006090.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00021271g0008.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|0|0|2|0|66 NbS00001339g0010.1 protein AED:0.18 eAED:0.24 QI:0|0|0.12|1|0.14|0.25|8|0|620; (*GB) gi|296085490|emb|CBI29222.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940A6|PP325_ARATH (e_value=2e-116) Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2;; (*TAIR) AT4G19440.2 (e_value=9e-118) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10602006-10604483 REVERSE LENGTH=825;; (*ITAG) Solyc11g005940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:757823-760342 transcript_region:SL2.40ch11:757823..760342- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL1_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001339g0009.1 protein AED:0.08 eAED:0.08 QI:64|1|0.66|1|1|1|3|0|96; (*GB) gi|224131164|ref|XP_002328470.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT4G33467.2 (e_value=3e-14) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16101691-16102084 REVERSE LENGTH=101;; (*ITAG) Solyc11g005930.1.1 (e_value=9e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:751368-752840 transcript_region:SL2.40ch11:751368..752840+ functional_description:"ST63-2 (AHRD V1 ***- B4YYB2_THEHA)"; NbS00001339g0013.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|66 NbC24853968g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc01g058510.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:59686457-59686720 transcript_region:SL2.40ch01:59686457..59686720- functional_description:"Unknown Protein (AHRD V1)"; NbS00000404g0010.1 protein AED:0.05 eAED:0.05 QI:285|0.25|0|1|0.25|0.2|5|0|587; (*GB) gi|225442928|ref|XP_002265258.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Vitis vinifera];; (*SWP) sp|Q9FK93|PP406_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1;; (*TAIR) AT5G39680.1 (e_value=0.0) | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:15884236-15886368 REVERSE LENGTH=710;; (*ITAG) Solyc11g065250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47710375-47712495 transcript_region:SL2.40ch11:47710375..47712495+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00000404g0011.1 protein AED:0.36 eAED:0.38 QI:0|0.75|0.4|1|0.75|0.8|5|248|195; (*GB) gi|45935140|gb|AAS79598.1| (e_value=1e-46) hypothetical protein [Ipomoea trifida];; (*TAIR) AT2G27900.2 (e_value=2e-29) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=2e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00000404g0012.1 protein AED:0.44 eAED:0.65 QI:0|0|0.25|1|0.33|0.5|4|0|126; (*GB) gi|117166035|dbj|BAF36337.1| (e_value=1e-17) hypothetical protein [Ipomoea trifida];; (*TAIR) AT2G27900.2 (e_value=5e-11) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00000404g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.76|1|0.75|0.69|13|634|1247; (*GB) gi|359479457|ref|XP_002274653.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256902 [Vitis vinifera];; (*SWP) sp|Q9QYI3|DNJC7_MOUSE (e_value=1e-32) DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2;; (*TAIR) AT5G12430.1 (e_value=0.0) | Symbols: TPR16 | Heat shock protein DnaJ with tetratricopeptide repeat | chr5:4028475-4034086 REVERSE LENGTH=1165;; (*ITAG) Solyc11g065260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47715490-47734377 transcript_region:SL2.40ch11:47715490..47734377- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00025715g0217.1 protein AED:0.14 eAED:0.14 QI:287|1|0.9|1|0.88|0.8|10|251|621 NbS00025715g0207.1 protein AED:0.18 eAED:0.25 QI:1474|0.87|0.88|1|0.25|0.33|9|211|393 NbS00025715g0223.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|9|126|495 NbS00025715g0220.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.4|1|0.66|0.6|10|0|850 NbS00000704g0006.1 protein AED:0.14 eAED:0.15 QI:0|1|0|1|1|1|2|0|565; (*GB) gi|224089352|ref|XP_002308701.1| (e_value=3e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|O22193|PUB4_ARATH (e_value=5e-15) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G31890.2 (e_value=5e-99) | Symbols: | ARM repeat superfamily protein | chr4:15427290-15429049 REVERSE LENGTH=518;; (*ITAG) Solyc08g042100.2.1 (e_value=2e-177) genomic_reference:SL2.40ch08 gene_region:29084630-29086647 transcript_region:SL2.40ch08:29084630..29086647+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MAU3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00000704g0008.1 protein AED:0.80 eAED:1.00 QI:0|0|0|1|1|1|2|0|81 NbS00024275g0003.1 protein AED:0.04 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|244; (*ITAG) Solyc01g105790.1.1 (e_value=2e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85594175-85595480 transcript_region:SL2.40ch01:85594175..85595480- functional_description:"Unknown Protein (AHRD V1)"; NbS00024275g0010.1 protein AED:0.36 eAED:0.36 QI:287|1|1|1|0.2|0.16|6|639|190; (*GB) gi|13384064|gb|AAK21256.1|AF335243_1 (e_value=4e-76) MADS-box transcription factor FBP25 [Petunia x hybrida];; (*SWP) sp|Q9FUY6|JOIN_SOLLC (e_value=9e-44) MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1;; (*TAIR) AT2G22540.1 (e_value=3e-43) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc01g105800.2.1 (e_value=5e-74) genomic_reference:SL2.40ch01 gene_region:85600271-85609097 transcript_region:SL2.40ch01:85600271..85609097+ go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0046982 NbS00024275g0012.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|2|0|95 NbS00006354g0013.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0.25|4|0|423; (*GB) gi|350538915|ref|NP_001234365.1| (e_value=2e-112) DELLA protein GAI [Solanum lycopersicum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=7e-114) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=8e-101) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=4e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00006354g0009.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|4|0|383; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=2e-106) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=1e-83) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=7e-85) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc11g012510.1.1 (e_value=4e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5329768-5331396 transcript_region:SL2.40ch11:5329768..5331396- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00040564g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|0.88|1|0.62|0.66|9|234|205; (*GB) gi|356582328|ref|NP_001239046.1| (e_value=8e-139) calcineurin B-like 2 [Solanum lycopersicum];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=7e-139) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT4G26570.1 (e_value=1e-136) | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226;; (*ITAG) Solyc07g065820.2.1 (e_value=2e-141) genomic_reference:SL2.40ch07 gene_region:64652286-64656394 transcript_region:SL2.40ch07:64652286..64656394+ go_terms:GO:0004723 functional_description:"Calcineurin B (AHRD V1 ***- Q8L7F6_PEA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0004723 NbS00040564g0006.1 protein AED:0.26 eAED:0.26 QI:149|0.33|0.25|1|1|1|4|0|338; (*GB) gi|158286538|ref|XP_308797.3| (e_value=1e-134) AGAP006961-PA [Anopheles gambiae str. PEST];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=3e-103) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=7e-104) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc07g065840.2.1 (e_value=2e-104) genomic_reference:SL2.40ch07 gene_region:64658676-64662396 transcript_region:SL2.40ch07:64658676..64662396- go_terms:GO:0042623 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623 NbS00015455g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|15220284|ref|NP_172576.1| (e_value=1e-27) alpha/beta-hydrolase-like protein [Arabidopsis thaliana];; (*TAIR) AT1G11090.1 (e_value=3e-30) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3702655-3703629 FORWARD LENGTH=324;; (*ITAG) Solyc09g075140.2.1 (e_value=8e-22) genomic_reference:SL2.40ch09 gene_region:62435204-62439921 transcript_region:SL2.40ch09:62435204..62439921- go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0008289,GO:0004622 NbS00025937g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|0.66|0.5|0.66|3|0|366; (*GB) gi|255569410|ref|XP_002525672.1| (e_value=5e-132) Peroxidase 44 precursor, putative [Ricinus communis];; (*SWP) sp|Q93V93|PER44_ARATH (e_value=7e-119) Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1;; (*TAIR) AT4G26010.1 (e_value=6e-120) | Symbols: | Peroxidase superfamily protein | chr4:13200653-13201688 FORWARD LENGTH=310;; (*ITAG) Solyc11g039570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:24793206-24794886 transcript_region:SL2.40ch11:24793206..24794886+ go_terms:GO:0055114 functional_description:"Peroxidase 57 (AHRD V1 ***- D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00038880g0004.1 protein AED:0.28 eAED:0.30 QI:158|0.86|0.87|1|0.86|0.93|16|5|468; (*GB) gi|1488652|emb|CAA62817.1| (e_value=0.0) fumarase [Solanum tuberosum];; (*SWP) sp|P93033|FUM1_ARATH (e_value=0.0) Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2;; (*TAIR) AT2G47510.2 (e_value=0.0) | Symbols: FUM1 | fumarase 1 | chr2:19498614-19502020 FORWARD LENGTH=492;; (*ITAG) Solyc09g075450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62645088-62653706 transcript_region:SL2.40ch09:62645088..62653706- go_terms:GO:0005515 functional_description:"Fumarate hydratase class II (AHRD V1 ***- C5GAL1_AJEDR); contains Interpro domain(s) IPR005677 Fumarate hydratase, class II "; GO:0005515 NbS00006999g0007.1 protein AED:0.07 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|221; (*GB) gi|357478601|ref|XP_003609586.1| (e_value=6e-17) hypothetical protein MTR_4g118830 [Medicago truncatula];; (*ITAG) Solyc01g067340.1.1 (e_value=2e-93) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:68200193-68200974 transcript_region:SL2.40ch01:68200193..68200974+ go_terms:GO:0005634,GO:0008152,GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0008152,GO:0045449 NbS00006999g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|434; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=6e-147) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=2e-111) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT5G65550.1 (e_value=4e-65) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26198410-26199810 REVERSE LENGTH=466;; (*ITAG) Solyc01g067350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68202503-68203913 transcript_region:SL2.40ch01:68202503..68203913- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 **-- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00006999g0008.1 protein AED:0.23 eAED:0.29 QI:181|0.7|0.63|1|0.3|0.45|11|449|370; (*GB) gi|225432370|ref|XP_002276039.1| (e_value=1e-140) PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q96PM5|ZN363_HUMAN (e_value=4e-46) RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1;; (*TAIR) AT5G18650.1 (e_value=2e-141) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:6218260-6220374 FORWARD LENGTH=267;; (*ITAG) Solyc01g067360.2.1 (e_value=2e-166) genomic_reference:SL2.40ch01 gene_region:68204221-68208658 transcript_region:SL2.40ch01:68204221..68208658- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q2QP88_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00008248g0027.1 protein AED:0.02 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|313; (*GB) gi|255540875|ref|XP_002511502.1| (e_value=6e-93) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=5e-48) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=4e-49) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc03g113360.2.1 (e_value=3e-147) genomic_reference:SL2.40ch03 gene_region:57559925-57563405 transcript_region:SL2.40ch03:57559925..57563405- functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00008248g0002.1 protein AED:0.09 eAED:0.12 QI:672|0|0.5|1|0|0.5|2|0|928; (*GB) gi|225456631|ref|XP_002266698.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g74750 [Vitis vinifera];; (*SWP) sp|Q9SSF9|PP123_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1;; (*TAIR) AT1G74750.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28086800-28089367 FORWARD LENGTH=855;; (*ITAG) Solyc03g113380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57579634-57586074 transcript_region:SL2.40ch03:57579634..57586074- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS48_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00008248g0033.1 protein AED:0.18 eAED:0.19 QI:0|0.63|0.65|1|0.68|0.65|20|569|1649; (*GB) gi|225456629|ref|XP_002266656.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera];; (*SWP) sp|Q8BL06|UBP54_MOUSE (e_value=6e-35) Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2;; (*TAIR) AT3G47890.1 (e_value=0.0) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc03g113370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57567290-57576026 transcript_region:SL2.40ch03:57567290..57576026- go_terms:GO:0006511,GO:0005622 functional_description:"Inactive ubiquitin carboxyl-terminal hydrolase 54 (AHRD V1 *-*- UBP54_MOUSE); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00008248g0030.1 protein AED:0.67 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|88 NbS00008248g0039.1 protein AED:0.25 eAED:0.27 QI:0|0.37|0.22|1|0.12|0.22|9|0|725; (*GB) gi|359491354|ref|XP_002266572.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267228 [Vitis vinifera];; (*SWP) sp|O14099|YERG_SCHPO (e_value=2e-21) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT1G74770.1 (e_value=5e-169) | Symbols: | zinc ion binding | chr1:28089695-28094834 REVERSE LENGTH=1259;; (*ITAG) Solyc03g113350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57552366-57558840 transcript_region:SL2.40ch03:57552366..57558840+ go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00008248g0036.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|138; (*ITAG) Solyc07g025130.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:24838568-24838886 transcript_region:SL2.40ch07:24838568..24838886+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008248g0035.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.33|0.5|0.66|3|0|105 NbS00008248g0024.1 protein AED:0.90 eAED:0.92 QI:0|0|0|0.5|1|1|6|0|273 NbS00008248g0037.1 protein AED:0.34 eAED:0.67 QI:0|0|0|1|0|0|3|0|141; (*ITAG) Solyc12g038990.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37195052-37195508 transcript_region:SL2.40ch12:37195052..37195508- functional_description:"Unknown Protein (AHRD V1)"; NbS00008248g0032.1 protein AED:0.48 eAED:0.80 QI:0|0|0|1|0|0|4|0|120 NbS00009552g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|125 NbS00007641g0009.1 protein AED:0.13 eAED:0.13 QI:288|0.66|0.71|1|0.83|0.57|7|0|997; (*GB) gi|225450634|ref|XP_002278233.1| (e_value=8e-172) PREDICTED: uncharacterized protein LOC100264914 [Vitis vinifera];; (*TAIR) AT3G58650.1 (e_value=6e-72) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). | chr3:21696349-21699219 REVERSE LENGTH=820;; (*ITAG) Solyc01g100290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82127098-82132121 transcript_region:SL2.40ch01:82127098..82132121+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007641g0012.1 protein AED:0.18 eAED:0.27 QI:0|0.42|0.25|1|0.42|0.37|8|0|501; (*GB) gi|357441847|ref|XP_003591201.1| (e_value=0.0) Bloom syndrome protein-like protein [Medicago truncatula];; (*SWP) sp|Q9FT74|RQL1_ARATH (e_value=0.0) ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana GN=RECQL1 PE=2 SV=1;; (*TAIR) AT3G05740.1 (e_value=0.0) | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-1701228 FORWARD LENGTH=606;; (*ITAG) Solyc01g100280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82113424-82119096 transcript_region:SL2.40ch01:82113424..82119096+ go_terms:GO:0004003 functional_description:"ATP-DEPENDENT DNA HELICASE (AHRD V1 *-** Q8SRI7_ENCCU); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0004003 NbS00007641g0112.1 protein AED:0.16 eAED:0.18 QI:35|0.7|0.63|1|0.6|0.54|11|269|590 NbS00007641g0111.1 protein AED:0.26 eAED:0.26 QI:0|1|0.85|1|0.66|0.85|7|367|563 NbS00007641g0110.1 protein AED:0.48 eAED:0.79 QI:0|0|0|1|1|1|2|0|45 NbS00012614g0003.1 protein AED:0.32 eAED:0.32 QI:6|0.5|0.4|1|0.25|0.4|5|538|179; (*ITAG) Solyc01g073870.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00006435g0001.1 protein AED:0.09 eAED:0.21 QI:0|0|0|1|1|1|2|0|344; (*GB) gi|357482577|ref|XP_003611575.1| (e_value=7e-144) hypothetical protein MTR_5g015460 [Medicago truncatula];; (*TAIR) AT3G49880.1 (e_value=1e-136) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00006435g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|276; (*GB) gi|297741373|emb|CBI32504.3| (e_value=7e-26) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g108950.1.1 (e_value=7e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87833474-87835392 transcript_region:SL2.40ch01:87833474..87835392+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os11g0197600 (AHRD V1 *-*- Y1176_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00006435g0009.1 protein AED:0.30 eAED:0.42 QI:0|0.5|0|1|0|0|3|0|150; (*GB) gi|225428637|ref|XP_002284808.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100255593 [Vitis vinifera];; (*TAIR) AT2G26500.1 (e_value=1e-16) | Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD LENGTH=125;; (*ITAG) Solyc01g109040.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:87870125-87870994 transcript_region:SL2.40ch01:87870125..87870994+ go_terms:GO:0009496 functional_description:"Plastoquinol-plastocyanin reductase (AHRD V1 **-* B6SRD7_MAIZE); contains Interpro domain(s) IPR012595 PetM of cytochrome b6/f complex subunit 7 "; GO:0009496 NbS00051070g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|369; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=2e-139) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=5e-141) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=7e-105) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00005459g0013.1 protein AED:0.22 eAED:0.31 QI:0|0|0|1|1|1|2|0|154 NbS00005459g0011.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0|0|2|0|80 NbS00030088g0004.1 protein AED:0.36 eAED:0.37 QI:0|1|0.66|1|1|1|6|0|368; (*GB) gi|296085428|emb|CBI29160.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54360.1 (e_value=9e-167) | Symbols: | zinc ion binding | chr3:20128570-20131581 REVERSE LENGTH=405;; (*ITAG) Solyc10g080520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61087663-61090599 transcript_region:SL2.40ch10:61087663..61090599- go_terms:GO:0016020,GO:0008270 functional_description:"E3 ubiquitin-protein ligase CHFR (AHRD V1 *--- CHFR_DANRE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0016020,GO:0008270 NbS00014621g0008.1 protein AED:0.07 eAED:0.07 QI:266|1|1|1|1|1|7|435|452; (*GB) gi|359486797|ref|XP_002278587.2| (e_value=1e-177) PREDICTED: uncharacterized protein LOC100246148 [Vitis vinifera];; (*TAIR) AT2G39690.1 (e_value=2e-142) | Symbols: | Protein of unknown function, DUF547 | chr2:16541165-16543267 FORWARD LENGTH=498;; (*ITAG) Solyc06g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2457956-2463621 transcript_region:SL2.40ch06:2457956..2463621+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 ***- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00014621g0009.1 protein AED:0.02 eAED:0.05 QI:86|0.6|0.33|1|0.6|0.83|6|0|630; (*GB) gi|359486795|ref|XP_002278568.2| (e_value=0.0) PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera];; (*SWP) sp|Q9M2T1|AP3BA_ARATH (e_value=2e-157) AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2;; (*TAIR) AT3G55480.1 (e_value=2e-158) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20570629 REVERSE LENGTH=987;; (*ITAG) Solyc06g043030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00038428g0007.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0.25|1|0.33|0.5|4|0|734; (*GB) gi|13936326|gb|AAK40247.1| (e_value=0.0) kinase interacting protein 1 [Petunia integrifolia];; (*TAIR) AT1G09720.1 (e_value=2e-147) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:3144438-3147303 REVERSE LENGTH=928;; (*ITAG) Solyc04g014380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4632442-4636309 transcript_region:SL2.40ch04:4632442..4636309+ functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00038428g0006.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0.5|2|0|80; (*GB) gi|13936326|gb|AAK40247.1| (e_value=1e-30) kinase interacting protein 1 [Petunia integrifolia];; (*TAIR) AT2G22560.1 (e_value=2e-19) | Symbols: | Kinase interacting (KIP1-like) family protein | chr2:9585892-9588838 FORWARD LENGTH=947;; (*ITAG) Solyc04g014380.2.1 (e_value=3e-35) genomic_reference:SL2.40ch04 gene_region:4632442-4636309 transcript_region:SL2.40ch04:4632442..4636309+ functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00009727g0001.1 protein AED:0.32 eAED:0.59 QI:348|0.5|0.66|1|0|0.33|3|0|75; (*ITAG) Solyc01g056620.2.1 (e_value=5e-22) genomic_reference:SL2.40ch01 gene_region:47922648-47930463 transcript_region:SL2.40ch01:47922648..47930463+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- B5BUY7_ARATH); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbC26303306g0002.1 protein AED:0.09 eAED:0.31 QI:76|0|0|1|0|0|2|0|86; (*GB) gi|321158527|dbj|BAJ72666.1| (e_value=2e-14) ethylene response factor 6b [Nicotiana tabacum]; NbS00012966g0008.1 protein AED:0.21 eAED:0.29 QI:0|0.33|0.42|1|0.16|0.28|7|0|330; (*GB) gi|225445772|ref|XP_002273237.1| (e_value=2e-118) PREDICTED: uncharacterized protein LOC100251872 [Vitis vinifera];; (*TAIR) AT4G30840.1 (e_value=2e-111) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:15017831-15019709 REVERSE LENGTH=361;; (*ITAG) Solyc07g006010.2.1 (e_value=5e-180) genomic_reference:SL2.40ch07 gene_region:852663-856740 transcript_region:SL2.40ch07:852663..856740- functional_description:"Nucleoporin Nup43 (AHRD V1 *-*- NUP43_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00012966g0007.1 protein AED:0.56 eAED:0.56 QI:178|0.66|0.5|0.75|0.66|0.75|4|0|238; (*GB) gi|357479955|ref|XP_003610263.1| (e_value=9e-28) 50S ribosomal protein L35 [Medicago truncatula];; (*SWP) sp|P23326|RK35_SPIOL (e_value=6e-26) 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1;; (*TAIR) AT2G24090.1 (e_value=3e-24) | Symbols: | Ribosomal protein L35 | chr2:10242038-10243416 FORWARD LENGTH=145;; (*ITAG) Solyc07g006000.2.1 (e_value=4e-49) genomic_reference:SL2.40ch07 gene_region:847789-852012 transcript_region:SL2.40ch07:847789..852012- go_terms:GO:0005840 functional_description:"50S ribosomal protein L35 (AHRD V1 *-*- D7LGR4_ARALY); contains Interpro domain(s) IPR001706 Ribosomal protein L35 "; GO:0005840 NbS00021507g0004.1 protein AED:0.39 eAED:0.67 QI:0|0|0|0.25|1|1|4|0|205; (*GB) gi|325610396|gb|ADZ36363.1| (e_value=7e-20) hypothetical protein RF2 [Symplocos paniculata];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=3e-21) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-19) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=7e-18) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00023594g0004.1 protein AED:0.06 eAED:0.06 QI:210|1|0.66|1|0|0|3|0|536; (*GB) gi|8248034|gb|AAF74025.1|AF156696_1 (e_value=0.0) inorganic phosphate transporter [Nicotiana tabacum];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=0.0) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=0.0) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc09g090070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00004912g0007.1 protein AED:0.06 eAED:0.06 QI:146|0.75|0.4|1|0.5|0.2|5|0|361; (*GB) gi|224129298|ref|XP_002320550.1| (e_value=3e-138) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07570.1 (e_value=9e-123) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:2418205-2420206 REVERSE LENGTH=369;; (*ITAG) Solyc06g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44799771-44803447 transcript_region:SL2.40ch06:44799771..44803447- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6T412_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00013771g0001.1 protein AED:0.45 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|201; (*ITAG) Solyc01g097170.2.1 (e_value=8e-19) genomic_reference:SL2.40ch01 gene_region:79879394-79880238 transcript_region:SL2.40ch01:79879394..79880238+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004169g0003.1 protein AED:0.27 eAED:0.28 QI:6|1|0.5|1|1|1|4|0|523; (*GB) gi|255561576|ref|XP_002521798.1| (e_value=0.0) Patellin-5, putative [Ricinus communis];; (*SWP) sp|Q56Z59|PATL3_ARATH (e_value=0.0) Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2;; (*TAIR) AT1G72160.1 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:27153823-27155609 REVERSE LENGTH=490;; (*ITAG) Solyc11g027880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:15706357-15709426 transcript_region:SL2.40ch11:15706357..15709426+ go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- SFH5_YARLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00040402g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|826; (*GB) gi|255586113|ref|XP_002533720.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51650.1 (e_value=4e-161) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). | chr3:19159449-19162267 FORWARD LENGTH=842;; (*ITAG) Solyc09g018310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14422207-14431899 transcript_region:SL2.40ch09:14422207..14431899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040402g0003.1 protein AED:0.08 eAED:0.08 QI:57|1|0.5|1|0|0|2|0|79 NbS00006496g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.5|1|1|1|6|0|583; (*GB) gi|350535917|ref|NP_001234220.1| (e_value=0.0) auxin efflux facilitator SlPIN9 [Solanum lycopersicum];; (*SWP) sp|Q67UL3|PIN1C_ORYSJ (e_value=0.0) Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1;; (*TAIR) AT1G73590.1 (e_value=0.0) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622;; (*ITAG) Solyc10g078370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59518688-59521564 transcript_region:SL2.40ch10:59518688..59521564+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier (AHRD V1 ***- D6RT09_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0016021 NbS00021360g0003.1 protein AED:0.00 eAED:0.00 QI:97|1|1|1|0|0.33|3|234|162; (*GB) gi|359476094|ref|XP_002282215.2| (e_value=7e-47) PREDICTED: uncharacterized protein LOC100259398 [Vitis vinifera];; (*ITAG) Solyc08g067390.2.1 (e_value=1e-57) genomic_reference:SL2.40ch08 gene_region:53631177-53633631 transcript_region:SL2.40ch08:53631177..53633631+ functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 *-*- B6RN16_9ROSI); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00018433g0010.1 protein AED:0.07 eAED:0.08 QI:0|1|0|1|1|1|2|202|861; (*GB) gi|255571471|ref|XP_002526683.1| (e_value=0.0) Systemin receptor SR160 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT3G51740.1 (e_value=0.0) | Symbols: IMK2 | inflorescence meristem receptor-like kinase 2 | chr3:19189248-19191842 FORWARD LENGTH=836;; (*ITAG) Solyc09g015170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8151741-8154870 transcript_region:SL2.40ch09:8151741..8154870+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00018433g0011.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.44|0.88|0.25|0.33|9|279|765; (*GB) gi|224140525|ref|XP_002323633.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P37707|B2_DAUCA (e_value=2e-26) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G01660.1 (e_value=9e-165) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc09g015120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8040621-8045731 transcript_region:SL2.40ch09:8040621..8045731+ functional_description:"Kelch-like protein (AHRD V1 *-*- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00018433g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|214; (*GB) gi|225439548|ref|XP_002263463.1| (e_value=1e-62) PREDICTED: PRA1 family protein B4 isoform 1 [Vitis vinifera];; (*SWP) sp|O80915|PR1B4_ARATH (e_value=7e-64) PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1;; (*TAIR) AT2G38360.1 (e_value=5e-65) | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 | chr2:16069840-16070502 REVERSE LENGTH=220;; (*ITAG) Solyc10g076360.1.1 (e_value=1e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58654946-58655620 transcript_region:SL2.40ch10:58654946..58655620+ functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00004251g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.7|0.54|1|0.8|0.72|11|0|584; (*GB) gi|359481069|ref|XP_002264021.2| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera];; (*SWP) sp|Q9H2U1|DHX36_HUMAN (e_value=3e-155) Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2;; (*TAIR) AT2G35920.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995;; (*ITAG) Solyc01g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1541848-1551389 transcript_region:SL2.40ch01:1541848..1551389+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0042802 NbS00004251g0017.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.2|1|0.75|0.8|5|0|223; (*GB) gi|359481069|ref|XP_002264021.2| (e_value=4e-56) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera];; (*TAIR) AT2G35920.1 (e_value=5e-49) | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995;; (*ITAG) Solyc01g006970.2.1 (e_value=3e-78) genomic_reference:SL2.40ch01 gene_region:1541848-1551389 transcript_region:SL2.40ch01:1541848..1551389+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0042802 NbS00004251g0010.1 protein AED:0.49 eAED:0.51 QI:0|0.5|0|0.66|1|1|3|0|138; (*GB) gi|147866084|emb|CAN84134.1| (e_value=3e-74) hypothetical protein VITISV_000112 [Vitis vinifera];; (*SWP) sp|Q6P5D3|DHX57_MOUSE (e_value=3e-43) Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2;; (*TAIR) AT2G35920.1 (e_value=8e-69) | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995;; (*ITAG) Solyc01g006970.2.1 (e_value=8e-73) genomic_reference:SL2.40ch01 gene_region:1541848-1551389 transcript_region:SL2.40ch01:1541848..1551389+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0042802 NbS00057657g0004.1 protein AED:0.13 eAED:0.15 QI:50|0|0|0.8|0.25|0.2|5|0|808; (*GB) gi|224130658|ref|XP_002328344.1| (e_value=9e-90) autoinhibited calcium ATPase [Populus trichocarpa];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=1e-82) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=7e-84) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc07g065300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64340488-64343918 transcript_region:SL2.40ch07:64340488..64343918+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0005388 NbS00038236g0010.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.5|0.33|3|0|383; (*GB) gi|297743458|emb|CBI36325.3| (e_value=4e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XI36|MBD10_ARATH (e_value=1e-32) Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1;; (*TAIR) AT1G15340.1 (e_value=9e-34) | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384;; (*ITAG) Solyc06g068140.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:38624657-38627697 transcript_region:SL2.40ch06:38624657..38627697+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00038236g0009.1 protein AED:0.32 eAED:0.32 QI:260|1|1|1|0.5|0.33|3|120|263; (*GB) gi|359482360|ref|XP_002266079.2| (e_value=6e-122) PREDICTED: uncharacterized protein LOC100242207 [Vitis vinifera];; (*TAIR) AT3G15820.1 (e_value=5e-120) | Symbols: ROD1 | phosphatidic acid phosphatase-related / PAP2-related | chr3:5351217-5353573 FORWARD LENGTH=301;; (*ITAG) Solyc06g068150.2.1 (e_value=4e-163) genomic_reference:SL2.40ch06 gene_region:38627482-38628951 transcript_region:SL2.40ch06:38627482..38628951- go_terms:GO:0004142 functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 ***- Q9LVZ7_ARATH)"; GO:0004142 NbS00026440g0005.1 protein AED:0.28 eAED:0.32 QI:0|0.66|0.57|1|0.5|0.71|7|0|535; (*GB) gi|225441042|ref|XP_002277826.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264768 [Vitis vinifera];; (*SWP) sp|Q39W86|PYRH_GEOMG (e_value=4e-59) Uridylate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pyrH PE=3 SV=1;; (*TAIR) AT3G10030.1 (e_value=0.0) | Symbols: | aspartate/glutamate/uridylate kinase family protein | chr3:3092277-3094831 REVERSE LENGTH=542;; (*ITAG) Solyc09g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2269350-2276218 transcript_region:SL2.40ch09:2269350..2276218+ go_terms:GO:0008652,GO:0006561 functional_description:"Uridylate kinase (AHRD V1 *-*- B6TC37_MAIZE); contains Interpro domain(s) IPR001048 Aspartate/glutamate/uridylate kinase "; GO:0008652,GO:0006561 NbS00021813g0008.1 protein AED:0.07 eAED:0.07 QI:165|1|1|1|0.85|0.75|8|371|423; (*GB) gi|224284516|gb|ACN39991.1| (e_value=0.0) unknown [Picea sitchensis];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=0.0) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=3e-177) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc01g090550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00021813g0004.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|1|1|2|0|234; (*GB) gi|224101833|ref|XP_002334238.1| (e_value=3e-34) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8LBQ7|ERF34_ARATH (e_value=2e-23) Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2;; (*TAIR) AT2G44940.1 (e_value=2e-24) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295;; (*ITAG) Solyc05g050830.1.1 (e_value=9e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60197369-60198130 transcript_region:SL2.40ch05:60197369..60198130+ go_terms:GO:0005125,GO:0005138 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005125,GO:0005138 NbS00021813g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|109 NbS00040533g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|339; (*GB) gi|325516260|gb|ADZ24708.1| (e_value=0.0) 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase 1 [Solanum pennellii];; (*SWP) sp|P23525|IN37_SPIOL (e_value=3e-178) 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G63410.1 (e_value=1e-168) | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:23415816-23417002 REVERSE LENGTH=338;; (*ITAG) Solyc09g065730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59613799-59616601 transcript_region:SL2.40ch09:59613799..59616601- go_terms:GO:0051741 functional_description:"Methyltransferase (AHRD V1 *-** A0QNM6_MYCS2); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0051741 NbS00006810g0118.1 protein AED:0.09 eAED:0.13 QI:0|0|0|0.66|0|0.66|3|0|536 NbS00006810g0113.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.5|1|1|4|0|654 NbS00006810g0104.1 protein AED:0.51 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|90 NbS00006810g0116.1 protein AED:0.00 eAED:0.00 QI:212|1|1|1|0.25|0.2|5|509|283 NbS00006810g0106.1 protein AED:0.00 eAED:0.00 QI:998|1|0.5|1|0|0|2|0|220 NbS00006810g0117.1 protein AED:0.16 eAED:0.21 QI:0|1|0|1|1|1|2|0|460 NbS00050183g0005.1 protein AED:0.13 eAED:0.13 QI:395|0.9|0.90|1|0.5|0.54|11|138|640; (*GB) gi|225432732|ref|XP_002282939.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Vitis vinifera];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G32010.2 (e_value=0.0) | Symbols: CVL1 | CVP2 like 1 | chr2:13625344-13628081 FORWARD LENGTH=594;; (*ITAG) Solyc09g082370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63510443-63514374 transcript_region:SL2.40ch09:63510443..63514374- go_terms:GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0046030 NbS00057095g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|0.33|0.5|4|0|168; (*GB) gi|359493310|ref|XP_002280208.2| (e_value=1e-61) PREDICTED: uncharacterized protein LOC100244789 [Vitis vinifera];; (*TAIR) AT1G72030.1 (e_value=3e-47) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:27110887-27111825 FORWARD LENGTH=256;; (*ITAG) Solyc03g025710.2.1 (e_value=2e-67) genomic_reference:SL2.40ch03 gene_region:7500031-7502230 transcript_region:SL2.40ch03:7500031..7502230- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase (AHRD V1 ***- B2IU63_NOSP7); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00014591g0024.1 protein AED:0.11 eAED:0.13 QI:0|0|0|0.75|0.33|0.5|4|0|320; (*GB) gi|225450757|ref|XP_002279349.1| (e_value=1e-66) PREDICTED: acetylajmalan esterase [Vitis vinifera];; (*SWP) sp|Q8RXT9|GDL8_ARATH (e_value=7e-61) GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2;; (*TAIR) AT1G28590.1 (e_value=5e-62) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc12g017460.1.1 (e_value=8e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00014591g0007.1 protein AED:0.23 eAED:0.23 QI:2286|1|0.8|1|0|0|5|0|413; (*GB) gi|147818767|emb|CAN65038.1| (e_value=4e-73) hypothetical protein VITISV_021706 [Vitis vinifera];; (*TAIR) AT1G76870.1 (e_value=1e-64) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | chr1:28857250-28858407 FORWARD LENGTH=385;; (*ITAG) Solyc01g104760.2.1 (e_value=7e-96) genomic_reference:SL2.40ch01 gene_region:84891715-84892996 transcript_region:SL2.40ch01:84891715..84892996- go_terms:GO:0003700 functional_description:"Homeodomain-like (AHRD V1 *-*- A7UQU9_MEDTR)"; GO:0003700 NbS00014591g0029.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|0|0.33|3|0|202; (*GB) gi|224105511|ref|XP_002313837.1| (e_value=9e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15780.1 (e_value=1e-45) | Symbols: | Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257;; (*ITAG) Solyc01g108350.2.1 (e_value=2e-102) genomic_reference:SL2.40ch01 gene_region:87454424-87455286 transcript_region:SL2.40ch01:87454424..87455286+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00014591g0027.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.5|1|3|0|297; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=3e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q09052|ACCO1_BRAJU (e_value=5e-37) 1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1;; (*TAIR) AT3G11180.2 (e_value=2e-40) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:3504249-3506871 FORWARD LENGTH=403;; (*ITAG) Solyc03g116290.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59822418-59824195 transcript_region:SL2.40ch03:59822418..59824195+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 **-* G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00014591g0011.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|82 NbS00014591g0023.1 protein AED:0.26 eAED:0.30 QI:273|0.8|0.83|1|0|0.16|6|323|86; (*GB) gi|1351359|sp|P48504.2|QCR6_SOLTU (e_value=1e-33) RecName: Full=Cytochrome b-c1 complex subunit 6; AltName: Full=CR7; AltName: Full=Complex III subunit 6; AltName: Full=Complex III subunit VI; AltName: Full=Mitochondrial hinge protein; AltName: Full=Ubiquinol-cytochrome c reductase complex 7.8 kDa protein;; (*SWP) sp|P48504|QCR6_SOLTU (e_value=3e-35) Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G15120.1 (e_value=2e-33) | Symbols: | Ubiquinol-cytochrome C reductase hinge protein | chr1:5203091-5203897 FORWARD LENGTH=69;; (*ITAG) Solyc09g074870.2.1 (e_value=3e-37) genomic_reference:SL2.40ch09 gene_region:62177324-62184749 transcript_region:SL2.40ch09:62177324..62184749- go_terms:GO:0006122,GO:0005975,GO:0019318 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 *-*- O48971_TOBAC); contains Interpro domain(s) IPR003422 Ubiquinol-cytochrome C reductase hinge "; GO:0006122,GO:0005975,GO:0019318 NbS00014591g0028.1 protein AED:0.43 eAED:0.86 QI:0|0|0|1|0.69|0.71|14|0|321 NbS00008264g0001.1 protein AED:0.12 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|463; (*GB) gi|357452997|ref|XP_003596775.1| (e_value=0.0) High-affinity nitrate transporter [Medicago truncatula];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=0.0) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=0.0) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g010250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:5518796-5521038 transcript_region:SL2.40ch06:5518796..5521038- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00004606g0004.1 protein AED:0.34 eAED:0.75 QI:0|0|0|1|0|0.33|3|0|177; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-12) hypothetical protein [Nicotiana tabacum]; NbS00004606g0003.1 protein AED:0.38 eAED:0.50 QI:0|0|0|1|0|0|5|0|136 NbS00005147g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.5|0.5|0.66|0.5|4|361|61 NbS00022949g0003.1 protein AED:0.00 eAED:0.00 QI:512|0|0.5|1|0|0.5|2|178|171; (*GB) gi|225444623|ref|XP_002275644.1| (e_value=4e-55) PREDICTED: uncharacterized protein LOC100266455 [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=9e-14) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G20810.1 (e_value=2e-50) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc07g042470.2.1 (e_value=2e-69) genomic_reference:SL2.40ch07 gene_region:52986797-52990125 transcript_region:SL2.40ch07:52986797..52990125+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00022949g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|113205400|gb|AAU90303.2| (e_value=3e-13) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc12g019720.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00046703g0005.1 protein AED:0.09 eAED:0.09 QI:179|1|0.66|1|1|1|3|0|181; (*GB) gi|359486795|ref|XP_002278568.2| (e_value=7e-100) PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera];; (*SWP) sp|Q13367|AP3B2_HUMAN (e_value=5e-33) AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2;; (*TAIR) AT3G55480.2 (e_value=5e-97) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20571171 REVERSE LENGTH=1115;; (*ITAG) Solyc06g043030.2.1 (e_value=2e-111) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00046703g0006.1 protein AED:0.64 eAED:0.78 QI:0|0|0|1|0.5|0|3|0|124; (*GB) gi|255584875|ref|XP_002533153.1| (e_value=9e-49) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2T1|AP3BA_ARATH (e_value=5e-44) AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2;; (*TAIR) AT3G55480.1 (e_value=4e-45) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20570629 REVERSE LENGTH=987;; (*ITAG) Solyc06g043030.2.1 (e_value=4e-57) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00046261g0001.1 protein AED:0.19 eAED:0.19 QI:196|1|0.85|1|0|0|7|241|532; (*GB) gi|225429764|ref|XP_002280551.1| (e_value=1e-111) PREDICTED: uncharacterized protein LOC100245643 [Vitis vinifera];; (*TAIR) AT5G24870.2 (e_value=3e-68) | Symbols: | RING/U-box superfamily protein | chr5:8545008-8546923 REVERSE LENGTH=520;; (*ITAG) Solyc12g096420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63686253-63689020 transcript_region:SL2.40ch12:63686253..63689020+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00022992g0010.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0|0.5|2|0|274; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-67) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00022992g0011.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|122; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-25) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc03g044360.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00022992g0009.1 protein AED:0.10 eAED:0.10 QI:281|0.92|0.92|1|0.61|0.64|14|502|556; (*GB) gi|225452167|ref|XP_002264334.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera];; (*SWP) sp|A9X1D0|SETD3_PAPAN (e_value=4e-17) Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1;; (*TAIR) AT5G14260.2 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr5:4601139-4603873 FORWARD LENGTH=514;; (*ITAG) Solyc02g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32674393-32677699 transcript_region:SL2.40ch02:32674393..32677699- functional_description:"SET domain-containing protein (AHRD V1 ***- D7M620_ARALY); contains Interpro domain(s) IPR001214 SET "; NbC25977882g0003.1 protein AED:0.02 eAED:0.02 QI:90|1|0.75|1|0.33|0.5|4|0|118; (*GB) gi|255547145|ref|XP_002514630.1| (e_value=3e-47) Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis];; (*TAIR) AT5G60940.1 (e_value=2e-40) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:24523092-24525655 FORWARD LENGTH=429;; (*ITAG) Solyc12g038530.1.1 (e_value=8e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35973528-35980630 transcript_region:SL2.40ch12:35973528..35980630+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B5VVI6_SPIMA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00013693g0001.1 protein AED:0.09 eAED:0.09 QI:51|-1|0|1|-1|1|1|0|164; (*GB) gi|356563727|ref|XP_003550111.1| (e_value=4e-83) PREDICTED: uncharacterized protein LOC100527805 [Glycine max];; (*TAIR) AT4G31330.1 (e_value=1e-71) | Symbols: | Protein of unknown function, DUF599 | chr4:15202354-15203151 FORWARD LENGTH=239;; (*ITAG) Solyc12g096310.1.1 (e_value=8e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63628876-63632224 transcript_region:SL2.40ch12:63628876..63632224+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00013693g0024.1 protein AED:0.14 eAED:0.14 QI:27|1|1|1|1|1|7|380|225; (*GB) gi|82623379|gb|ABB87104.1| (e_value=4e-137) ChaC-like family protein-like [Solanum tuberosum];; (*SWP) sp|Q5PPV4|CHAC2_XENLA (e_value=1e-35) Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1;; (*TAIR) AT5G26220.1 (e_value=3e-120) | Symbols: | ChaC-like family protein | chr5:9163178-9164613 REVERSE LENGTH=216;; (*ITAG) Solyc12g096320.1.1 (e_value=2e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63636701-63638486 transcript_region:SL2.40ch12:63636701..63638486+ go_terms:GO:0005515 functional_description:"ChaC cation transport regulator-like 1 (AHRD V1 ***- A8KBI8_DANRE); contains Interpro domain(s) IPR006840 ChaC-like protein "; GO:0005515 NbS00013693g0026.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|199; (*GB) gi|224105759|ref|XP_002333769.1| (e_value=3e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3SZ85|PTRD1_BOVIN (e_value=2e-20) Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus GN=PTRHD1 PE=2 SV=2;; (*TAIR) AT5G10700.1 (e_value=2e-61) | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr5:3378053-3378867 REVERSE LENGTH=200;; (*ITAG) Solyc12g096390.1.1 (e_value=8e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63668048-63669780 transcript_region:SL2.40ch12:63668048..63669780+ go_terms:GO:0006412,GO:0006470 functional_description:"Protein C2orf79 homolog (AHRD V1 *--- D3PGK2_9MAXI); contains Interpro domain(s) IPR017867 Protein-tyrosine phosphatase, low molecular weight "; GO:0006412,GO:0006470 NbS00013693g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.14|0|0.87|1|1|8|0|517; (*GB) gi|225444009|ref|XP_002281463.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00013693g0004.1 protein AED:0.18 eAED:0.19 QI:63|0|0.5|1|0|0.5|2|0|674; (*GB) gi|255548592|ref|XP_002515352.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=2e-16) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT4G31540.1 (e_value=0.0) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc12g096370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63661011-63663035 transcript_region:SL2.40ch12:63661011..63663035- go_terms:GO:0000145 functional_description:"Exocyst complex component EXO70 (AHRD V1 *--- EXO70_YEAST); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00013693g0007.1 protein AED:0.08 eAED:0.25 QI:237|0.5|0.66|1|0|0|3|579|457; (*GB) gi|147865101|emb|CAN79390.1| (e_value=2e-13) hypothetical protein VITISV_004910 [Vitis vinifera];; (*ITAG) Solyc12g096410.1.1 (e_value=1e-89) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:63672113-63673148 transcript_region:SL2.40ch12:63672113..63673148- functional_description:"Unknown Protein (AHRD V1)"; NbS00013693g0027.1 protein AED:0.34 eAED:0.34 QI:113|0.8|0.5|1|0.6|0.83|6|446|159; (*GB) gi|296081778|emb|CBI20783.3| (e_value=3e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXB4|Y5620_ARATH (e_value=2e-52) Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1;; (*TAIR) AT5G10620.1 (e_value=2e-53) | Symbols: | methyltransferases | chr5:3355466-3356615 REVERSE LENGTH=193;; (*ITAG) Solyc12g096330.1.1 (e_value=3e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63639472-63640442 transcript_region:SL2.40ch12:63639472..63640442- go_terms:GO:0005737 functional_description:"Ribosomal RNA large subunit methyltransferase H (AHRD V1 ***- A3UBP0_CROAH); contains Interpro domain(s) IPR003742 SPOUT methyltransferase, predicted "; GO:0005737 NbS00021660g0006.1 protein AED:0.14 eAED:0.15 QI:164|0.92|0.86|1|0.92|0.86|15|0|888; (*GB) gi|224074998|ref|XP_002304511.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81742|APBLC_ARATH (e_value=0.0) Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2;; (*TAIR) AT4G23460.1 (e_value=0.0) | Symbols: | Adaptin family protein | chr4:12243899-12248898 REVERSE LENGTH=893;; (*ITAG) Solyc08g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61549434-61558071 transcript_region:SL2.40ch08:61549434..61558071- go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit "; GO:0030276 NbS00019628g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|147838921|emb|CAN77067.1| (e_value=6e-39) hypothetical protein VITISV_022410 [Vitis vinifera];; (*SWP) sp|Q9M041|BH140_ARATH (e_value=4e-29) Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1;; (*TAIR) AT5G01310.1 (e_value=3e-30) | Symbols: APTX | APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912;; (*ITAG) Solyc09g005070.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:44909-45355 transcript_region:SL2.40ch09:44909..45355+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK13_9ASPA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00033786g0003.1 protein AED:0.15 eAED:0.15 QI:123|1|0.75|1|1|1|4|0|482; (*GB) gi|359472749|ref|XP_002276440.2| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g11130-like [Vitis vinifera];; (*SWP) sp|Q9LFP3|GLYT4_ARATH (e_value=3e-19) Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana GN=At5g11120/At5g11130 PE=3 SV=2;; (*TAIR) AT2G35100.1 (e_value=0.0) | Symbols: ARAD1 | Exostosin family protein | chr2:14793993-14795564 REVERSE LENGTH=447;; (*ITAG) Solyc02g068690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33206047-33209607 transcript_region:SL2.40ch02:33206047..33209607- go_terms:GO:0016757 functional_description:"Exostosin family protein-like protein (AHRD V1 **-- Q84SM6_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00042915g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|660; (*GB) gi|359488501|ref|XP_002280135.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261660 [Vitis vinifera];; (*SWP) sp|Q9VSJ8|EXOC7_DROME (e_value=2e-13) Exocyst complex component 7 OS=Drosophila melanogaster GN=exo70 PE=1 SV=2;; (*TAIR) AT3G29400.1 (e_value=0.0) | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo70 family protein E1 | chr3:11297339-11299315 REVERSE LENGTH=658;; (*ITAG) Solyc02g088800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45346206-45348185 transcript_region:SL2.40ch02:45346206..45348185- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00030026g0003.1 protein AED:0.12 eAED:0.12 QI:215|1|1|1|0.5|0.6|5|379|481; (*GB) gi|225446392|ref|XP_002274522.1| (e_value=0.0) PREDICTED: O-acyltransferase WSD1 [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=6e-33) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49190.1 (e_value=9e-52) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc12g010590.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3563160-3568207 transcript_region:SL2.40ch12:3563160..3568207+ go_terms:GO:0008152 functional_description:"O-acyltransferase WSD1 (AHRD V1 **-- WSD1_ARATH)"; GO:0008152 NbS00030026g0014.1 protein AED:0.18 eAED:0.23 QI:0|0.66|0.52|1|0.66|0.72|25|0|1122; (*GB) gi|68300799|gb|AAY89342.1| (e_value=0.0) RNA polymerase II second largest subunit [Nicotiana sylvestris];; (*SWP) sp|P38420|RPB2_ARATH (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2;; (*TAIR) AT4G21710.1 (e_value=0.0) | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA polymerase family protein | chr4:11535684-11542200 REVERSE LENGTH=1188;; (*ITAG) Solyc12g010600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3579393-3586368 transcript_region:SL2.40ch12:3579393..3586368+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Z1_SOLLC); contains Interpro domain(s) IPR007121 RNA polymerase, beta subunit, conserved site IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00007872g0006.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|255543194|ref|XP_002512660.1| (e_value=8e-102) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G23255.2 (e_value=1e-79) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. | chr3:8311795-8312947 FORWARD LENGTH=225;; (*ITAG) Solyc12g016210.1.1 (e_value=2e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6354251-6355473 transcript_region:SL2.40ch12:6354251..6355473- functional_description:"Unknown Protein (AHRD V1)"; NbS00007872g0005.1 protein AED:0.25 eAED:0.30 QI:118|0.78|0.85|1|0.94|0.9|20|365|539; (*GB) gi|224065415|ref|XP_002301806.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P43294|MHK_ARATH (e_value=0.0) Serine/threonine-protein kinase MHK OS=Arabidopsis thaliana GN=MHK PE=2 SV=2;; (*TAIR) AT4G13020.4 (e_value=0.0) | Symbols: MHK | Protein kinase superfamily protein | chr4:7603947-7606732 FORWARD LENGTH=405;; (*ITAG) Solyc06g083210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45017429-45023473 transcript_region:SL2.40ch06:45017429..45023473+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- B7ZEB8_EUPRA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007872g0026.1 protein AED:0.31 eAED:0.31 QI:33|0.66|0.25|0.75|0.66|0.75|4|0|184; (*ITAG) Solyc06g083250.2.1 (e_value=4e-41) genomic_reference:SL2.40ch06 gene_region:45034667-45036788 transcript_region:SL2.40ch06:45034667..45036788+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007872g0033.1 protein AED:0.33 eAED:0.35 QI:0|0.6|0.33|1|0.4|0.33|6|0|326; (*GB) gi|225470035|ref|XP_002265228.1| (e_value=3e-101) PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera];; (*TAIR) AT4G13030.2 (e_value=2e-68) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7607400-7609656 FORWARD LENGTH=479;; (*ITAG) Solyc06g083220.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:45024224-45029578 transcript_region:SL2.40ch06:45024224..45029578+ functional_description:"ATP binding protein (AHRD V1 *-*- B6TPV9_MAIZE)"; NbS00007872g0032.1 protein AED:0.40 eAED:0.75 QI:0|0|0|1|0|0.16|6|0|190; (*GB) gi|255580517|ref|XP_002531083.1| (e_value=3e-20) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT4G13030.2 (e_value=3e-14) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7607400-7609656 FORWARD LENGTH=479;; (*ITAG) Solyc06g083220.2.1 (e_value=5e-33) genomic_reference:SL2.40ch06 gene_region:45024224-45029578 transcript_region:SL2.40ch06:45024224..45029578+ functional_description:"ATP binding protein (AHRD V1 *-*- B6TPV9_MAIZE)"; NbS00007872g0027.1 protein AED:0.12 eAED:0.12 QI:157|1|0.8|1|0.75|0.8|5|32|223; (*GB) gi|255587656|ref|XP_002534344.1| (e_value=3e-109) 40S ribosomal protein S8, putative [Ricinus communis];; (*SWP) sp|P49199|RS8_ORYSJ (e_value=3e-110) 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=7e-102) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=2e-109) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00007872g0028.1 protein AED:0.16 eAED:0.16 QI:209|1|0.92|1|1|1|13|0|576; (*GB) gi|355329948|dbj|BAL14273.1| (e_value=0.0) FK506-binding protein [Nicotiana tabacum];; (*SWP) sp|Q38931|FKB62_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=0.0) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc06g083190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45004847-45008910 transcript_region:SL2.40ch06:45004847..45008910- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00007872g0029.1 protein AED:0.17 eAED:0.17 QI:239|1|0.5|1|1|1|2|0|458; (*GB) gi|350534446|ref|NP_001234141.1| (e_value=0.0) GTP cyclohydrolase I [Solanum lycopersicum];; (*SWP) sp|Q94465|GCH1_DICDI (e_value=2e-39) GTP cyclohydrolase 1 OS=Dictyostelium discoideum GN=gchA PE=1 SV=2;; (*TAIR) AT3G07270.1 (e_value=0.0) | Symbols: | GTP cyclohydrolase I | chr3:2315451-2317059 FORWARD LENGTH=466;; (*ITAG) Solyc06g083230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45029876-45033174 transcript_region:SL2.40ch06:45029876..45033174- go_terms:GO:0003934 functional_description:"GTP cyclohydrolase I (AHRD V1 **** Q8VYU3_SOLLC); contains Interpro domain(s) IPR001474 GTP cyclohydrolase I "; GO:0003934 NbS00007872g0030.1 protein AED:0.32 eAED:0.32 QI:165|1|1|1|0.77|0.7|10|529|251; (*GB) gi|359496560|ref|XP_003635266.1| (e_value=9e-152) PREDICTED: cyclin-C1-2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FJK7|CCC12_ARATH (e_value=2e-143) Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1;; (*TAIR) AT5G48630.1 (e_value=2e-144) | Symbols: | Cyclin family protein | chr5:19721663-19723200 REVERSE LENGTH=253;; (*ITAG) Solyc06g083260.2.1 (e_value=2e-179) genomic_reference:SL2.40ch06 gene_region:45036952-45042387 transcript_region:SL2.40ch06:45036952..45042387- go_terms:GO:0005515 functional_description:"Cyclin family protein (AHRD V1 ***- D7MM47_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515 NbS00007872g0037.1 protein AED:0.01 eAED:0.06 QI:0|0|0|1|0|0|2|0|390; (*GB) gi|225458862|ref|XP_002283378.1| (e_value=2e-166) PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LSF5|PP254_ARATH (e_value=4e-157) Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1;; (*TAIR) AT3G25210.1 (e_value=3e-158) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9180348-9181487 FORWARD LENGTH=379;; (*ITAG) Solyc06g083200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45011661-45012800 transcript_region:SL2.40ch06:45011661..45012800- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q513_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00040983g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|75150330|sp|Q8GSM7.1|HCT_TOBAC (e_value=0.0) RecName: Full=Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase; AltName: Full=Hydroxycinnamoyl transferase;; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=0.0) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=4e-168) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00016391g0005.1 protein AED:0.01 eAED:0.01 QI:68|1|1|1|0|0|3|197|367; (*GB) gi|386576426|gb|AFJ12117.1| (e_value=0.0) glycosyltransferase, partial [Nicotiana tabacum];; (*SWP) sp|Q9ZQC6|IRX9_ARATH (e_value=2e-134) Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1;; (*TAIR) AT2G37090.1 (e_value=2e-135) | Symbols: IRX9 | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15587671-15589223 REVERSE LENGTH=351;; (*ITAG) Solyc09g007420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:990503-994261 transcript_region:SL2.40ch09:990503..994261- go_terms:GO:0015018 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-* B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0015018 NbS00016391g0006.1 protein AED:0.02 eAED:0.02 QI:230|1|0.66|1|0.6|0.5|6|317|467; (*GB) gi|225439898|ref|XP_002279479.1| (e_value=9e-138) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-68) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=2e-96) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc09g007410.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:985216-988218 transcript_region:SL2.40ch09:985216..988218- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00016391g0007.1 protein AED:0.20 eAED:0.20 QI:702|1|1|1|0|1|2|688|76; (*GB) gi|18398610|ref|NP_566352.1| (e_value=8e-42) chaperone DnaJ-domain containing protein [Arabidopsis thaliana];; (*SWP) sp|Q6PBT7|TIM14_DANRE (e_value=1e-26) Mitochondrial import inner membrane translocase subunit TIM14 OS=Danio rerio GN=dnajc19 PE=2 SV=1;; (*TAIR) AT3G09700.1 (e_value=2e-44) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:2975094-2976139 REVERSE LENGTH=112;; (*ITAG) Solyc09g007390.2.1 (e_value=2e-47) genomic_reference:SL2.40ch09 gene_region:978806-981575 transcript_region:SL2.40ch09:978806..981575- go_terms:GO:0001671 functional_description:"Mitochondrial import inner membrane translocase subunit TIM14 (AHRD V1 ***- B6TQ49_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0001671 NbS00055502g0005.1 protein AED:0.00 eAED:0.00 QI:305|1|0.8|1|0.5|0.4|5|0|521; (*GB) gi|147790774|emb|CAN72739.1| (e_value=0.0) hypothetical protein VITISV_027256 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=1e-40) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=2e-78) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc03g034200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10162350-10168111 transcript_region:SL2.40ch03:10162350..10168111- go_terms:GO:0003676 functional_description:"KH domain containing protein expressed (AHRD V1 **-- Q8LNT9_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00046843g0008.1 protein AED:0.28 eAED:0.28 QI:579|0.8|0.90|1|0.5|0.72|11|343|382; (*GB) gi|147862315|emb|CAN83189.1| (e_value=0.0) hypothetical protein VITISV_037040 [Vitis vinifera];; (*SWP) sp|Q6P988|NOTUM_HUMAN (e_value=4e-18) Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2;; (*TAIR) AT5G23870.2 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr5:8045958-8049999 REVERSE LENGTH=436;; (*ITAG) Solyc03g025600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7376053-7384703 transcript_region:SL2.40ch03:7376053..7384703+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00047285g0009.1 protein AED:0.27 eAED:0.27 QI:111|0.75|0.6|1|1|1|5|0|218; (*GB) gi|225443510|ref|XP_002276338.1| (e_value=2e-60) PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=2e-55) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.2 (e_value=2e-56) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285;; (*ITAG) Solyc10g008760.2.1 (e_value=2e-90) genomic_reference:SL2.40ch10 gene_region:2830967-2833275 transcript_region:SL2.40ch10:2830967..2833275- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00047285g0003.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|87 NbS00047285g0008.1 protein AED:0.29 eAED:0.29 QI:331|1|0.66|1|1|1|3|0|426; (*GB) gi|11493393|gb|AAG35472.1|U67064_1 (e_value=0.0) sulfur [Nicotiana tabacum];; (*SWP) sp|O22436|CHLI_TOBAC (e_value=0.0) Magnesium-chelatase subunit chlI, chloroplastic OS=Nicotiana tabacum GN=CHLI PE=2 SV=1;; (*TAIR) AT5G45930.1 (e_value=0.0) | Symbols: CHLI2, CHL I2, CHLI-2 | magnesium chelatase i2 | chr5:18628095-18629565 FORWARD LENGTH=418;; (*ITAG) Solyc10g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2822974-2826287 transcript_region:SL2.40ch10:2822974..2826287+ go_terms:GO:0016887,GO:0016851 functional_description:"Magnesium chelatase ATPase subunit I (AHRD V1 **** Q53RM0_ORYSJ); contains Interpro domain(s) IPR011775 Magnesium chelatase, ATPase subunit I "; GO:0016887,GO:0016851 NbS00047285g0010.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|0|0|2|0|123; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=3e-24) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9SU13|FLA2_ARATH (e_value=4e-16) Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1;; (*TAIR) AT4G12730.1 (e_value=3e-17) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403;; (*ITAG) Solyc10g005960.1.1 (e_value=1e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00033294g0008.1 protein AED:0.13 eAED:0.13 QI:180|1|1|1|1|1|5|206|221; (*GB) gi|225429654|ref|XP_002281227.1| (e_value=2e-60) PREDICTED: uncharacterized protein LOC100257708 [Vitis vinifera];; (*TAIR) AT5G21430.1 (e_value=1e-49) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:7222294-7223400 FORWARD LENGTH=218;; (*ITAG) Solyc06g082970.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:44856886-44858406 transcript_region:SL2.40ch06:44856886..44858406+ go_terms:GO:0031072 functional_description:"DnaJ domain family (AHRD V1 ***- Q84VQ4_ARATH); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00033294g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|246; (*GB) gi|110739234|dbj|BAF01531.1| (e_value=8e-79) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT3G05170.1 (e_value=7e-81) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc10g045100.1.1 (e_value=8e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:26224911-26227947 transcript_region:SL2.40ch10:26224911..26227947- go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase (AHRD V1 ***- D9XTE1_9ACTO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00037340g0110.1 protein AED:0.30 eAED:0.30 QI:0|0.4|0.16|1|0.2|0.16|6|0|289 NbS00037340g0107.1 protein AED:0.31 eAED:0.31 QI:97|1|1|1|0.83|0.71|7|224|349 NbS00000200g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|356539126|ref|XP_003538051.1| (e_value=9e-23) PREDICTED: protein transport protein Sec61 subunit beta-like [Glycine max];; (*TAIR) AT5G60460.1 (e_value=8e-24) | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr5:24317590-24317919 REVERSE LENGTH=109;; (*ITAG) Solyc03g116990.1.1 (e_value=8e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:60310273-60310602 transcript_region:SL2.40ch03:60310273..60310602- functional_description:"Protein transport protein Sec61 beta subunit (AHRD V1 *-*- B6UEM6_MAIZE); contains Interpro domain(s) IPR016482 Preprotein translocase Sec, Sec61-beta subunit, eukarya "; NbS00011686g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.6|0.5|1|0|0.16|6|181|256; (*GB) gi|224085065|ref|XP_002307476.1| (e_value=3e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=2e-52) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=2e-53) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064630.2.1 (e_value=1e-86) genomic_reference:SL2.40ch04 gene_region:54919575-54923356 transcript_region:SL2.40ch04:54919575..54923356- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROME); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00011686g0005.1 protein AED:0.11 eAED:0.11 QI:266|0.8|0.83|1|0|0|6|124|209; (*GB) gi|356509332|ref|XP_003523404.1| (e_value=4e-93) PREDICTED: bidirectional sugar transporter SWEET1-like [Glycine max];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=6e-88) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=5e-89) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064620.2.1 (e_value=1e-120) genomic_reference:SL2.40ch04 gene_region:54912258-54914934 transcript_region:SL2.40ch04:54912258..54914934- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROPS); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00027258g0006.1 protein AED:0.25 eAED:0.25 QI:167|1|1|1|1|1|4|121|217; (*GB) gi|152963813|gb|ABS50234.1| (e_value=6e-113) Ran binding protein [Nicotiana benthamiana];; (*SWP) sp|P92985|RBP1C_ARATH (e_value=8e-87) Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1;; (*TAIR) AT5G58590.1 (e_value=6e-88) | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680319-23681714 REVERSE LENGTH=219;; (*ITAG) Solyc06g082120.2.1 (e_value=6e-92) genomic_reference:SL2.40ch06 gene_region:44333171-44336113 transcript_region:SL2.40ch06:44333171..44336113+ go_terms:GO:0008536 functional_description:"Ran GTPase binding protein (AHRD V1 **** C4R913_PICPG); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0008536 NbS00027258g0008.1 protein AED:0.33 eAED:0.34 QI:0|0|0.33|1|0|0|3|0|284; (*GB) gi|147846786|emb|CAN78503.1| (e_value=8e-30) hypothetical protein VITISV_023071 [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=7e-19) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=5e-20) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc04g072330.1.1 (e_value=5e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56943238-56944733 transcript_region:SL2.40ch04:56943238..56944733- go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00027258g0114.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.42|0.85|0.5|0.57|7|0|303 NbS00027258g0116.1 protein AED:0.23 eAED:0.23 QI:0|0.77|0.5|1|0.55|0.7|10|0|440 NbS00027258g0115.1 protein AED:0.51 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|128 NbS00047409g0002.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0|1|1|1|4|0|454; (*GB) gi|310877838|gb|ADP37150.1| (e_value=0.0) putative polyol/monosaccharide transporter [Vitis vinifera];; (*SWP) sp|Q0WUU6|PLT4_ARATH (e_value=0.0) Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1;; (*TAIR) AT2G20780.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:8947496-8949170 REVERSE LENGTH=526;; (*ITAG) Solyc02g078600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37832984-37835542 transcript_region:SL2.40ch02:37832984..37835542- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00047409g0001.1 protein AED:0.11 eAED:0.11 QI:193|0.88|0.94|1|1|1|18|421|654; (*GB) gi|356546253|ref|XP_003541544.1| (e_value=0.0) PREDICTED: splicing factor 3B subunit 2-like [Glycine max];; (*SWP) sp|Q13435|SF3B2_HUMAN (e_value=5e-86) Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2;; (*TAIR) AT4G21660.1 (e_value=2e-168) | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584;; (*ITAG) Solyc02g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37836635-37847031 transcript_region:SL2.40ch02:37836635..37847031+ go_terms:GO:0005515 functional_description:"Splicing factor 3b subunit 2 (AHRD V1 **-- Q80W39_MOUSE); contains Interpro domain(s) IPR007180 Protein of unknown function DUF382 "; GO:0005515 NbS00047409g0003.1 protein AED:0.27 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|252; (*GB) gi|255555985|ref|XP_002519027.1| (e_value=2e-99) lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q67BJ4|A4GAT_MOUSE (e_value=1e-14) Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus GN=A4galt PE=2 SV=1;; (*TAIR) AT3G09020.1 (e_value=1e-77) | Symbols: | alpha 1,4-glycosyltransferase family protein | chr3:2753307-2754542 FORWARD LENGTH=411;; (*ITAG) Solyc02g078590.1.1 (e_value=7e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37829569-37830858 transcript_region:SL2.40ch02:37829569..37830858+ go_terms:GO:0005795 functional_description:"Alpha-1 4-galactosyltransferase (AHRD V1 *-*- Q0R0H6_MOUSE); contains Interpro domain(s) IPR007652 Alpha 1,4-glycosyltransferase conserved region "; GO:0005795 NbS00015038g0014.1 protein AED:0.08 eAED:0.08 QI:543|1|1|1|0.75|0.6|5|611|921; (*GB) gi|147770432|emb|CAN75893.1| (e_value=0.0) hypothetical protein VITISV_009390 [Vitis vinifera];; (*SWP) sp|Q9LE38|NLP4_ARATH (e_value=0.0) Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1;; (*TAIR) AT1G20640.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr1:7155201-7157986 FORWARD LENGTH=844;; (*ITAG) Solyc04g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63713023-63717884 transcript_region:SL2.40ch04:63713023..63717884+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DME9_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00015038g0018.1 protein AED:0.11 eAED:0.11 QI:147|0.85|0.75|1|0.85|0.87|8|321|476; (*GB) gi|211906480|gb|ACJ11733.1| (e_value=0.0) catalase [Gossypium hirsutum];; (*SWP) sp|P17598|CATA1_GOSHI (e_value=0.0) Catalase isozyme 1 OS=Gossypium hirsutum GN=CAT1 PE=2 SV=2;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc04g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63696861-63701335 transcript_region:SL2.40ch04:63696861..63701335+ go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** Q8L7J7_CAPAN); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00015038g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.25|1|0.33|0.25|4|385|763; (*GB) gi|147798083|emb|CAN67256.1| (e_value=0.0) hypothetical protein VITISV_039434 [Vitis vinifera];; (*SWP) sp|Q9FMF6|PP444_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1;; (*TAIR) AT5G64320.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:25723247-25725439 REVERSE LENGTH=730;; (*ITAG) Solyc08g076680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57776442-57778604 transcript_region:SL2.40ch08:57776442..57778604- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015038g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|554; (*GB) gi|225457528|ref|XP_002270022.1| (e_value=0.0) PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=0.0) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=0.0) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc06g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2849007-2853412 transcript_region:SL2.40ch06:2849007..2853412- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00022844g0005.1 protein AED:0.27 eAED:0.27 QI:843|0.85|0.75|1|0.71|0.75|8|115|446; (*GB) gi|255558468|ref|XP_002520259.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G76990.5 (e_value=0.0) | Symbols: ACR3 | ACT domain repeat 3 | chr1:28933387-28935179 FORWARD LENGTH=453;; (*ITAG) Solyc06g059800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34097108-34103291 transcript_region:SL2.40ch06:34097108..34103291+ go_terms:GO:0008152 functional_description:"Protein-P-II uridylyltransferase (AHRD V1 *--- Q1YFE2_MOBAS); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00022844g0006.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|224; (*ITAG) Solyc06g059810.1.1 (e_value=2e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34103561-34110110 transcript_region:SL2.40ch06:34103561..34110110+ functional_description:"F-box family protein (AHRD V1 *-*- B9N8U5_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00022844g0009.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0|2|0|72 NbS00011327g0004.1 protein AED:0.17 eAED:0.21 QI:0|0.5|0.44|1|0.5|0.55|9|0|413; (*GB) gi|224094993|ref|XP_002310319.1| (e_value=4e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T071|HXKL2_ARATH (e_value=2e-117) Probable hexokinase-like 2 protein OS=Arabidopsis thaliana GN=At4g37840 PE=2 SV=1;; (*TAIR) AT4G37840.1 (e_value=2e-118) | Symbols: HKL3 | hexokinase-like 3 | chr4:17790147-17792198 REVERSE LENGTH=493;; (*ITAG) Solyc02g091830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47638491-47642246 transcript_region:SL2.40ch02:47638491..47642246+ go_terms:GO:0008865,GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FVD3_CITSI); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0008865,GO:0004340 NbS00038148g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|0.75|4|0|503; (*GB) gi|359492126|ref|XP_003634367.1| (e_value=0.0) PREDICTED: cytochrome P450 734A1 isoform 2 [Vitis vinifera];; (*SWP) sp|O48786|C734A_ARATH (e_value=2e-157) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT1G75130.1 (e_value=1e-179) | Symbols: CYP721A1 | cytochrome P450, family 721, subfamily A, polypeptide 1 | chr1:28200073-28201911 REVERSE LENGTH=505;; (*ITAG) Solyc04g080100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61967611-61970908 transcript_region:SL2.40ch04:61967611..61970908- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00038148g0004.1 protein AED:0.08 eAED:0.08 QI:301|1|1|1|0.66|0.75|4|270|505; (*GB) gi|225458335|ref|XP_002281605.1| (e_value=7e-161) PREDICTED: uncharacterized protein LOC100260826 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=2e-108) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT3G50700.1 (e_value=2e-110) | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840945-18842829 FORWARD LENGTH=452;; (*ITAG) Solyc04g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61978191-61981285 transcript_region:SL2.40ch04:61978191..61981285- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00005142g0004.1 protein AED:0.10 eAED:0.10 QI:170|1|1|1|1|1|4|370|266; (*GB) gi|356553917|ref|XP_003545297.1| (e_value=1e-59) PREDICTED: protein OSB1, mitochondrial-like [Glycine max];; (*SWP) sp|Q9SX99|OSB1_ARATH (e_value=2e-47) Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1;; (*TAIR) AT1G47720.1 (e_value=2e-48) | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261;; (*ITAG) Solyc04g079410.2.1 (e_value=4e-154) genomic_reference:SL2.40ch04 gene_region:61512653-61516019 transcript_region:SL2.40ch04:61512653..61516019+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding protein (AHRD V1 **-* D7KGI0_ARALY); contains Interpro domain(s) IPR000424 Primosome PriB/single-strand DNA-binding "; GO:0003697 NbS00021398g0012.1 protein AED:0.33 eAED:0.35 QI:0|0.81|0.75|1|0.81|0.75|12|0|838; (*GB) gi|225450401|ref|XP_002278318.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8L7S8|RH3_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2;; (*TAIR) AT5G26742.2 (e_value=0.0) | Symbols: emb1138 | DEAD box RNA helicase (RH3) | chr5:9285540-9288871 REVERSE LENGTH=748;; (*ITAG) Solyc08g042050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28924706-28934844 transcript_region:SL2.40ch08:28924706..28934844+ go_terms:GO:0004004,GO:0017151 functional_description:"DEAD-box ATP-dependent RNA helicase 3 (AHRD V1 **** RH3_ORYSJ); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0017151 NbS00021398g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|256; (*GB) gi|357445205|ref|XP_003592880.1| (e_value=8e-63) FAR1-related protein [Medicago truncatula];; (*SWP) sp|Q9SY66|FRS11_ARATH (e_value=2e-62) Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1;; (*TAIR) AT1G10240.1 (e_value=2e-63) | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680;; (*ITAG) Solyc01g103180.2.1 (e_value=1e-63) genomic_reference:SL2.40ch01 gene_region:83609493-83613702 transcript_region:SL2.40ch01:83609493..83613702+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00013913g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.88|1|1|1|9|86|392; (*GB) gi|347361138|gb|AEO86797.1| (e_value=0.0) cyclin [Camellia sinensis];; (*SWP) sp|Q9SFW6|CCB24_ARATH (e_value=6e-161) Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2;; (*TAIR) AT1G76310.1 (e_value=5e-162) | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630199 REVERSE LENGTH=431;; (*ITAG) Solyc12g094600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63115248-63118094 transcript_region:SL2.40ch12:63115248..63118094- go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B (AHRD V1 **** B6V744_POPTO); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00013913g0003.1 protein AED:0.24 eAED:0.24 QI:232|0.90|0.83|1|0.90|0.83|12|0|641; (*GB) gi|224086024|ref|XP_002307782.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-62) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G76270.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:28613554-28616537 REVERSE LENGTH=572;; (*ITAG) Solyc12g094590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63107924-63112866 transcript_region:SL2.40ch12:63107924..63112866- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00033815g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|214; (*GB) gi|2346972|dbj|BAA21920.1| (e_value=7e-65) ZPT2-11 [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=8e-27) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT2G28200.1 (e_value=6e-28) | Symbols: | C2H2-type zinc finger family protein | chr2:12024321-12025181 FORWARD LENGTH=286;; (*ITAG) Solyc09g008440.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1894187-1895119 transcript_region:SL2.40ch09:1894187..1895119+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LWQ5_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00033815g0005.1 protein AED:0.33 eAED:0.33 QI:259|0.75|1|1|1|1|5|339|189; (*GB) gi|225441147|ref|XP_002267276.1| (e_value=9e-104) PREDICTED: ras-related protein RABC2a [Vitis vinifera];; (*SWP) sp|O49841|RAC2A_ARATH (e_value=3e-102) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=2e-103) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc09g008460.2.1 (e_value=2e-114) genomic_reference:SL2.40ch09 gene_region:1905656-1911197 transcript_region:SL2.40ch09:1905656..1911197- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00020010g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|359494331|ref|XP_002267586.2| (e_value=8e-49) PREDICTED: E3 ubiquitin-protein ligase At4g11680 [Vitis vinifera];; (*TAIR) AT5G55970.2 (e_value=5e-44) | Symbols: | RING/U-box superfamily protein | chr5:22668019-22669312 FORWARD LENGTH=343;; (*ITAG) Solyc12g015800.1.1 (e_value=5e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5801485-5804137 transcript_region:SL2.40ch12:5801485..5804137- go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003373g0009.1 protein AED:0.26 eAED:0.26 QI:181|1|0.75|1|1|1|4|0|417; (*GB) gi|225454194|ref|XP_002273844.1| (e_value=0.0) PREDICTED: UPF0187 protein At3g61320, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M2D2|YU88_ARATH (e_value=1e-176) UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2;; (*TAIR) AT3G61320.1 (e_value=9e-178) | Symbols: | Bestrophin-like protein | chr3:22694002-22695474 FORWARD LENGTH=410;; (*ITAG) Solyc05g049900.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58886253-58890184 transcript_region:SL2.40ch05:58886253..58890184+ functional_description:"YneE (AHRD V1 **-- D4F0H3_EDWTA); contains Interpro domain(s) IPR007913 Uncharacterised protein family UPF0187 "; NbS00003373g0008.1 protein AED:0.35 eAED:0.44 QI:486|0.6|0.33|1|0.2|0.33|6|0|233; (*GB) gi|224127660|ref|XP_002320129.1| (e_value=5e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g049940.2.1 (e_value=4e-21) genomic_reference:SL2.40ch05 gene_region:58931871-58935359 transcript_region:SL2.40ch05:58931871..58935359+ functional_description:"T1N6.11 related (AHRD V1 ***- Q2HVL0_MEDTR)"; NbS00012231g0013.1 protein AED:0.14 eAED:0.14 QI:362|0.75|0.6|1|1|1|5|279|323; (*GB) gi|321268091|gb|ADW78848.1| (e_value=3e-172) galactinol synthase [Solanum tuberosum];; (*TAIR) AT2G47180.1 (e_value=2e-164) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc01g079170.2.1 (e_value=5e-173) genomic_reference:SL2.40ch01 gene_region:70769343-70771856 transcript_region:SL2.40ch01:70769343..70771856- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- D6QSF5_BRANA); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00012231g0004.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|159161198|ref|YP_001542484.1| (e_value=1e-37) ribosomal protein L14 [Ceratophyllum demersum];; (*SWP) sp|A8SEE0|RK14_CERDE (e_value=3e-39) 50S ribosomal protein L14, chloroplastic OS=Ceratophyllum demersum GN=rpl14 PE=3 SV=1;; (*ITAG) ATCG00780.1 (e_value=2e-35) | Symbols: RPL14 | ribosomal protein L14 | chrC:80696-81064 REVERSE LENGTH=122;; (*ITAG) Solyc01g007590.2.1 (e_value=2e-38) genomic_reference:SL2.40ch01 gene_region:1877388-1878459 transcript_region:SL2.40ch01:1877388..1878459- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L14 chloroplastic (AHRD V1 ***- D3WBB8_9BORA); contains Interpro domain(s) IPR005745 Ribosomal protein L14, bacterial-type "; GO:0005840,GO:0015934 NbS00012231g0012.1 protein AED:0.32 eAED:0.32 QI:204|0.85|0.87|1|0.71|0.87|8|374|224; (*GB) gi|350539707|ref|NP_001234506.1| (e_value=9e-102) PII-like protein [Solanum lycopersicum];; (*SWP) sp|Q9ZST4|GLNB_ARATH (e_value=6e-72) Nitrogen regulatory protein P-II homolog OS=Arabidopsis thaliana GN=GLB1 PE=1 SV=1;; (*TAIR) AT4G01900.1 (e_value=4e-73) | Symbols: PII, GLB1 | GLNB1 homolog | chr4:821736-823294 FORWARD LENGTH=196;; (*ITAG) Solyc06g009400.2.1 (e_value=2e-104) genomic_reference:SL2.40ch06 gene_region:3329017-3332826 transcript_region:SL2.40ch06:3329017..3332826+ go_terms:GO:0005515,GO:0010307 functional_description:"Nitrogen regulatory protein P-II (AHRD V1 *-*- Q8DLA5_THEEB); contains Interpro domain(s) IPR017918 Nitrogen regulatory protein PII, conserved site IPR002187 Nitrogen regulatory protein PII "; GO:0005515,GO:0010307 NbS00012231g0015.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|76; (*GB) gi|374412135|gb|AEZ49044.1| (e_value=7e-25) ribosomal protein S8, partial [Thurnia sphaerocephala];; (*SWP) sp|Q8S8V8|RR8_ATRBE (e_value=6e-26) 30S ribosomal protein S8, chloroplastic OS=Atropa belladonna GN=rps8 PE=3 SV=1;; (*ITAG) ATCG00770.1 (e_value=3e-20) | Symbols: RPS8 | ribosomal protein S8 | chrC:80068-80472 REVERSE LENGTH=134;; (*ITAG) Solyc01g007580.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:1876603-1878202 transcript_region:SL2.40ch01:1876603..1878202- go_terms:GO:0005840 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- D4PBE7_PHODC); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0005840 NbS00037434g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.57|0.85|0.5|0.42|7|0|423; (*GB) gi|297801636|ref|XP_002868702.1| (e_value=2e-176) hypothetical protein ARALYDRAFT_916331 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C9J0|LHTL5_ARATH (e_value=2e-173) Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2;; (*TAIR) AT1G71680.1 (e_value=1e-174) | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944671-26946731 FORWARD LENGTH=448;; (*ITAG) Solyc02g093860.2.1 (e_value=1e-156) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00002242g0001.1 protein AED:0.14 eAED:0.17 QI:196|0|0.66|1|1|1|3|190|169; (*ITAG) Solyc02g091700.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:47514511-47515716 transcript_region:SL2.40ch02:47514511..47515716- functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 ***- A9YWR1_MEDTR)"; NbS00016803g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|270; (*GB) gi|81074776|gb|ABB55374.1| (e_value=1e-164) ribosomal protein L2-like [Solanum tuberosum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=4e-166) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=2e-157) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc10g006580.2.1 (e_value=2e-166) genomic_reference:SL2.40ch10 gene_region:1125825-1127897 transcript_region:SL2.40ch10:1125825..1127897- go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00014368g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|889; (*GB) gi|359472776|ref|XP_002275546.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT3G57430.1 (e_value=0.0) | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890;; (*ITAG) Solyc02g081900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40244176-40246920 transcript_region:SL2.40ch02:40244176..40246920+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014368g0023.1 protein AED:0.16 eAED:0.17 QI:15|0.88|0.7|1|0.66|0.7|10|380|1180; (*GB) gi|359476014|ref|XP_002280960.2| (e_value=0.0) PREDICTED: DNA topoisomerase 1-like [Vitis vinifera];; (*SWP) sp|Q1RIM1|TOP1_RICBR (e_value=0.0) DNA topoisomerase 1 OS=Rickettsia bellii (strain RML369-C) GN=topA PE=3 SV=1;; (*TAIR) AT4G31210.1 (e_value=0.0) | Symbols: | DNA topoisomerase, type IA, core | chr4:15165280-15172534 FORWARD LENGTH=1284;; (*ITAG) Solyc02g081910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40248991-40259228 transcript_region:SL2.40ch02:40248991..40259228- go_terms:GO:0003677 functional_description:"DNA topoisomerase (AHRD V1 **** B9SPT5_RICCO); contains Interpro domain(s) IPR005733 DNA topoisomerase I, bacterial-type "; GO:0003677 NbS00014368g0025.1 protein AED:0.23 eAED:0.23 QI:298|0.83|0.92|1|0.41|0.53|13|1334|225; (*GB) gi|255574450|ref|XP_002528137.1| (e_value=3e-71) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G20130.1 (e_value=1e-62) | Symbols: PTAC14 | plastid transcriptionally active 14 | chr4:10878914-10881697 FORWARD LENGTH=483;; (*ITAG) Solyc02g081920.2.1 (e_value=7e-124) genomic_reference:SL2.40ch02 gene_region:40262124-40269883 transcript_region:SL2.40ch02:40262124..40269883- functional_description:"Plastid ribulose-1 5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase-related protein (Fragment) (AHRD V1 *-*- A7KWL3_ARALP); contains Interpro domain(s) IPR001214 SET "; NbS00014368g0001.1 protein AED:0.24 eAED:0.24 QI:258|0.87|0.77|1|0.87|0.77|9|378|320; (*GB) gi|224075359|ref|XP_002304601.1| (e_value=2e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CW42|MOSC1_MOUSE (e_value=4e-44) MOSC domain-containing protein 1, mitochondrial OS=Mus musculus GN=Marc1 PE=1 SV=2;; (*TAIR) AT1G30910.1 (e_value=2e-149) | Symbols: | Molybdenum cofactor sulfurase family protein | chr1:11000912-11002801 FORWARD LENGTH=318;; (*ITAG) Solyc02g081880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40236661-40240294 transcript_region:SL2.40ch02:40236661..40240294- go_terms:GO:0005515 functional_description:"Molybdenum cofactor sulfurase protein-like (AHRD V1 **-- Q653D7_ORYSJ); contains Interpro domain(s) IPR005303 MOSC, N-terminal beta barrel "; GO:0005515 NbS00014368g0026.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|85 NbS00014368g0017.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|0|1|0|113; (*GB) gi|359472778|ref|XP_003631195.1| (e_value=8e-31) PREDICTED: pentatricopeptide repeat-containing protein At1g52620-like [Vitis vinifera]; NbS00005389g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|225|393; (*GB) gi|224116190|ref|XP_002317235.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q38945|DPNPH_ARATH (e_value=1e-166) PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1;; (*TAIR) AT5G54390.1 (e_value=8e-168) | Symbols: AHL, ATAHL, HL | HAL2-like | chr5:22086133-22087586 FORWARD LENGTH=373;; (*ITAG) Solyc02g078860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38076526-38079868 transcript_region:SL2.40ch02:38076526..38079868- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0008441 NbS00005389g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|297803984|ref|XP_002869876.1| (e_value=1e-12) hypothetical protein ARALYDRAFT_914508 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G21620.2 (e_value=3e-15) | Symbols: | glycine-rich protein | chr4:11491519-11491914 FORWARD LENGTH=98;; (*ITAG) Solyc10g009190.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3186982-3187359 transcript_region:SL2.40ch10:3186982..3187359- functional_description:"Cold shock protein-1 (AHRD V1 *-*- B6SP63_MAIZE)"; NbS00005389g0101.1 protein AED:0.33 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|92 NbS00005389g0103.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.5|1|1|2|0|61 NbC25950162g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|326; (*GB) gi|302143807|emb|CBI22668.3| (e_value=8e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLW2|FRO5_ARATH (e_value=7e-110) Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1;; (*TAIR) AT5G23990.1 (e_value=2e-111) | Symbols: ATFRO5, FRO5 | ferric reduction oxidase 5 | chr5:8105565-8108590 REVERSE LENGTH=657;; (*ITAG) Solyc00g026160.2.1 (e_value=1e-165) genomic_reference:SL2.40ch00 gene_region:12327999-12331963 transcript_region:SL2.40ch00:12327999..12331963+ go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **** D6RVS5_HORVU); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0000293 NbS00019772g0010.1 protein AED:0.03 eAED:0.03 QI:365|1|1|1|1|1|2|1049|500; (*GB) gi|225453517|ref|XP_002275490.1| (e_value=0.0) PREDICTED: F-box protein At5g07670 [Vitis vinifera];; (*SWP) sp|Q9FGN3|FB290_ARATH (e_value=6e-154) F-box protein At5g51380 OS=Arabidopsis thaliana GN=At5g51380 PE=2 SV=1;; (*TAIR) AT5G51380.1 (e_value=5e-155) | Symbols: | RNI-like superfamily protein | chr5:20875945-20877779 FORWARD LENGTH=479;; (*ITAG) Solyc01g095800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78739324-78742011 transcript_region:SL2.40ch01:78739324..78742011+ functional_description:"F-box/LRR-repeat protein (AHRD V1 *-*- C0S347_PARBP); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00019772g0012.1 protein AED:0.13 eAED:0.13 QI:100|0.95|0.98|1|0.89|0.94|50|343|2329; (*GB) gi|255541160|ref|XP_002511644.1| (e_value=0.0) ccr4-not transcription complex, putative [Ricinus communis];; (*SWP) sp|Q6ZQ08|CNOT1_MOUSE (e_value=3e-180) CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2;; (*TAIR) AT1G02080.1 (e_value=0.0) | Symbols: | transcription regulators | chr1:373335-386682 FORWARD LENGTH=2431;; (*ITAG) Solyc01g090780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76194068-76219340 transcript_region:SL2.40ch01:76194068..76219340+ go_terms:GO:0005515,GO:0017163 functional_description:"Ccr4-Not transcription complex subunit (AHRD V1 *--* C5G9N0_AJEDR); contains Interpro domain(s) IPR007196 CCR4-Not complex component, Not1 "; GO:0005515,GO:0017163 NbS00031863g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|256; (*ITAG) Solyc05g005220.1.1 (e_value=8e-132) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:187568-188344 transcript_region:SL2.40ch05:187568..188344- functional_description:"Unknown Protein (AHRD V1)"; NbS00031863g0006.1 protein AED:0.12 eAED:0.15 QI:0|0.6|0.33|1|0.4|0.66|6|0|207; (*GB) gi|297739071|emb|CBI28560.3| (e_value=5e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LDT3|YAB4_ARATH (e_value=2e-60) Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2;; (*TAIR) AT1G23420.1 (e_value=1e-61) | Symbols: INO | Plant-specific transcription factor YABBY family protein | chr1:8317423-8319104 FORWARD LENGTH=231;; (*ITAG) Solyc05g005240.1.1 (e_value=2e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:191257-193043 transcript_region:SL2.40ch05:191257..193043- go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00031863g0007.1 protein AED:0.00 eAED:0.00 QI:179|1|1|1|0|0|4|151|98; (*GB) gi|297739070|emb|CBI28559.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10657.2 (e_value=2e-35) | Symbols: | Plant protein 1589 of unknown function | chr1:3530652-3531522 FORWARD LENGTH=101;; (*ITAG) Solyc05g005230.2.1 (e_value=6e-47) genomic_reference:SL2.40ch05 gene_region:189311-190275 transcript_region:SL2.40ch05:189311..190275+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00050224g0002.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|1|1|2|429|82; (*GB) gi|255543645|ref|XP_002512885.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27435.1 (e_value=1e-33) | Symbols: | unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9527956-9528814 REVERSE LENGTH=81;; (*ITAG) Solyc01g009850.2.1 (e_value=2e-28) genomic_reference:SL2.40ch01 gene_region:4369328-4375850 transcript_region:SL2.40ch01:4369328..4375850+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034510g0006.1 protein AED:0.24 eAED:0.27 QI:0|0.33|0.4|0.8|0.33|0.6|10|0|355; (*GB) gi|255556868|ref|XP_002519467.1| (e_value=1e-125) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G27730.1 (e_value=1e-61) | Symbols: | Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472;; (*ITAG) Solyc09g008360.2.1 (e_value=3e-110) genomic_reference:SL2.40ch09 gene_region:1823490-1828731 transcript_region:SL2.40ch09:1823490..1828731- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 *--- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00034510g0005.1 protein AED:0.15 eAED:0.15 QI:226|0.83|0.85|1|0.16|0.28|7|340|310; (*GB) gi|224117840|ref|XP_002317681.1| (e_value=3e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT2G36840.1 (e_value=7e-111) | Symbols: | ACT-like superfamily protein | chr2:15451834-15453550 REVERSE LENGTH=410;; (*ITAG) Solyc09g008350.2.1 (e_value=3e-171) genomic_reference:SL2.40ch09 gene_region:1817453-1822095 transcript_region:SL2.40ch09:1817453..1822095+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TMA2_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbC23341306g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|147856546|emb|CAN82488.1| (e_value=3e-31) hypothetical protein VITISV_006804 [Vitis vinifera];; (*SWP) sp|Q9ZU91|E133_ARATH (e_value=1e-30) Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2;; (*TAIR) AT2G01630.1 (e_value=9e-32) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:279541-281955 REVERSE LENGTH=501;; (*ITAG) Solyc04g007910.2.1 (e_value=5e-40) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00000367g0005.1 protein AED:0.19 eAED:0.21 QI:2204|0.94|1|1|0.36|0.35|20|532|205; (*GB) gi|359481269|ref|XP_002264351.2| (e_value=1e-75) PREDICTED: uncharacterized protein LOC100241398 [Vitis vinifera];; (*TAIR) AT5G01630.1 (e_value=1e-61) | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2-like B | chr5:235117-240911 REVERSE LENGTH=1155;; (*ITAG) Solyc02g050210.1.1 (e_value=9e-99) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:24785522-24787420 transcript_region:SL2.40ch02:24785522..24787420+ functional_description:"Breast cancer susceptibility protein 2b (AHRD V1 ***- Q7Y1C4_ARATH); contains Interpro domain(s) IPR015525 Breast cancer type 2 susceptibility protein "; NbS00000367g0110.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|0.33|0.25|4|0|284 NbS00011072g0005.1 protein AED:0.20 eAED:0.20 QI:57|0|1|1|1|1|2|282|235; (*GB) gi|225434965|ref|XP_002283929.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100251857 [Vitis vinifera];; (*TAIR) AT3G46540.1 (e_value=9e-13) | Symbols: | ENTH/VHS family protein | chr3:17134204-17135411 REVERSE LENGTH=307;; (*ITAG) Solyc11g065940.1.1 (e_value=2e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48643230-48644948 transcript_region:SL2.40ch11:48643230..48644948+ go_terms:GO:0005488 functional_description:"Epsin 2-like protein (Fragment) (AHRD V1 *-*- D9HX40_LAGLG); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00011072g0008.1 protein AED:0.20 eAED:0.20 QI:96|0.71|0.5|1|0.42|0.25|8|0|835; (*GB) gi|359478641|ref|XP_003632149.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera];; (*SWP) sp|Q8GUH1|PUB33_ARATH (e_value=3e-121) U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2;; (*TAIR) AT2G45910.1 (e_value=2e-122) | Symbols: | U-box domain-containing protein kinase family protein | chr2:18894520-18898212 FORWARD LENGTH=834;; (*ITAG) Solyc11g065950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48645711-48656003 transcript_region:SL2.40ch11:48645711..48656003- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00051175g0003.1 protein AED:0.10 eAED:0.10 QI:203|0.93|0.93|1|0.93|0.93|16|183|516; (*GB) gi|225452354|ref|XP_002273021.1| (e_value=0.0) PREDICTED: denticleless protein homolog A-like [Vitis vinifera];; (*SWP) sp|Q4V837|DTLA_XENLA (e_value=2e-65) Denticleless protein homolog A OS=Xenopus laevis GN=dtl-a PE=2 SV=1;; (*TAIR) AT3G27640.1 (e_value=1e-172) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535;; (*ITAG) Solyc02g086470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43724456-43729361 transcript_region:SL2.40ch02:43724456..43729361+ go_terms:GO:0030674,GO:0032403 functional_description:"WD repeat protein (AHRD V1 **-- B8MBM8_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030674,GO:0032403 NbS00028776g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0.5|0.33|3|184|117 NbS00028776g0007.1 protein AED:0.22 eAED:0.37 QI:0|0.6|0.16|1|0.8|0.66|6|0|494; (*GB) gi|262192739|gb|ACY30439.1| (e_value=4e-163) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT4G37130.1 (e_value=2e-120) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:17489567-17491773 FORWARD LENGTH=513;; (*ITAG) Solyc02g090230.2.1 (e_value=3e-160) genomic_reference:SL2.40ch02 gene_region:46429888-46437493 transcript_region:SL2.40ch02:46429888..46437493+ functional_description:"Nucleoporin p58/p45 (AHRD V1 ***- B4FHB0_MAIZE)"; NbS00035311g0001.1 protein AED:0.69 eAED:0.71 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|147782531|emb|CAN68429.1| (e_value=2e-21) hypothetical protein VITISV_012133 [Vitis vinifera];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=7e-14) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G67310.1 (e_value=4e-18) | Symbols: CYP81G1 | cytochrome P450, family 81, subfamily G, polypeptide 1 | chr5:26855313-26856924 REVERSE LENGTH=507;; (*ITAG) Solyc12g088460.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62264219-62265748 transcript_region:SL2.40ch12:62264219..62265748- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00053439g0003.1 protein AED:0.11 eAED:0.11 QI:64|0.9|0.81|1|0.8|0.90|11|0|450; (*GB) gi|359490925|ref|XP_003634187.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LIH9|RH51_ARATH (e_value=2e-179) DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1;; (*TAIR) AT3G18600.1 (e_value=1e-180) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6399724-6403007 REVERSE LENGTH=568;; (*ITAG) Solyc03g114370.2.1 (e_value=1e-145) genomic_reference:SL2.40ch03 gene_region:58425202-58432347 transcript_region:SL2.40ch03:58425202..58432347- go_terms:GO:0004004 functional_description:"Atp-dependent RNA helicase (AHRD V1 **** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00023708g0006.1 protein AED:0.26 eAED:0.27 QI:0|1|0.87|1|0.14|0.25|8|1361|289; (*GB) gi|356536663|ref|XP_003536856.1| (e_value=4e-86) PREDICTED: uncharacterized protein LOC100775788 [Glycine max];; (*TAIR) AT5G62960.1 (e_value=2e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc06g009380.2.1 (e_value=8e-126) genomic_reference:SL2.40ch06 gene_region:3296045-3299359 transcript_region:SL2.40ch06:3296045..3299359- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00023708g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.77|1|0.12|0.22|9|195|234; (*GB) gi|224064693|ref|XP_002301538.1| (e_value=1e-76) predicted protein [Populus trichocarpa];; (*TAIR) AT2G47115.1 (e_value=2e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:19345376-19346864 REVERSE LENGTH=300;; (*ITAG) Solyc06g009380.2.1 (e_value=1e-111) genomic_reference:SL2.40ch06 gene_region:3296045-3299359 transcript_region:SL2.40ch06:3296045..3299359- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00023708g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|356575929|ref|XP_003556088.1| (e_value=1e-15) PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-like [Glycine max];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=5e-12) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=4e-13) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc11g039910.1.1 (e_value=2e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:27428612-27429313 transcript_region:SL2.40ch11:27428612..27429313+ go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00041592g0004.1 protein AED:0.24 eAED:0.28 QI:195|0.90|0.66|1|0.81|0.75|12|0|438; (*GB) gi|297736705|emb|CBI25741.3| (e_value=7e-159) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q75LL6|TADA2_ORYSJ (e_value=4e-147) Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2;; (*TAIR) AT4G16420.1 (e_value=8e-130) | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=487;; (*ITAG) Solyc07g047610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56150637-56166439 transcript_region:SL2.40ch07:56150637..56166439- go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B6K677_SCHJY); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00037445g0008.1 protein AED:0.10 eAED:0.10 QI:116|0.6|0.66|1|0.6|0.5|6|242|328; (*GB) gi|313118418|gb|ADR32211.1| (e_value=3e-157) MPB2C-like protein [Nicotiana benthamiana];; (*TAIR) AT5G08120.1 (e_value=4e-41) | Symbols: MPB2C | movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326;; (*ITAG) Solyc03g114760.2.1 (e_value=4e-103) genomic_reference:SL2.40ch03 gene_region:58711188-58715633 transcript_region:SL2.40ch03:58711188..58715633+ go_terms:GO:0005515 functional_description:"TMV-MP30 binding protein 2C (AHRD V1 **-* Q8S556_TOBAC)"; GO:0005515 NbS00037445g0007.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|442; (*GB) gi|240254105|ref|NP_564057.4| (e_value=0.0) alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana];; (*SWP) sp|Q949Q1|GAUTB_ARATH (e_value=0.0) Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1;; (*TAIR) AT1G18580.1 (e_value=0.0) | Symbols: GAUT11 | galacturonosyltransferase 11 | chr1:6396144-6398005 FORWARD LENGTH=537;; (*ITAG) Solyc03g114810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58741832-58746719 transcript_region:SL2.40ch03:58741832..58746719- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00005904g0001.1 protein AED:0.54 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|346; (*ITAG) Solyc11g007360.1.1 (e_value=4e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1725490-1726254 transcript_region:SL2.40ch11:1725490..1726254+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00005904g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.73|0.93|0.85|0.93|15|0|844; (*GB) gi|359472780|ref|XP_002275485.2| (e_value=0.0) PREDICTED: probable RNA-binding protein 19-like [Vitis vinifera];; (*SWP) sp|Q54PB2|MRD1_DICDI (e_value=3e-113) Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1;; (*TAIR) AT4G19610.1 (e_value=0.0) | Symbols: | nucleotide binding;nucleic acid binding;RNA binding | chr4:10677482-10681623 FORWARD LENGTH=816;; (*ITAG) Solyc02g081940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40279015-40286579 transcript_region:SL2.40ch02:40279015..40286579+ go_terms:GO:0004386,GO:0003729 functional_description:"RNA binding protein (AHRD V1 **** D8LH81_ECTSI); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0004386,GO:0003729 NbS00010617g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.57|1|0.83|0.85|7|440|639; (*GB) gi|225448978|ref|XP_002273219.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SS48|SDP6_ARATH (e_value=0.0) Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1;; (*TAIR) AT3G10370.1 (e_value=0.0) | Symbols: SDP6 | FAD-dependent oxidoreductase family protein | chr3:3216502-3219027 FORWARD LENGTH=629;; (*ITAG) Solyc11g008380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2582420-2589330 transcript_region:SL2.40ch11:2582420..2589330- go_terms:GO:0004368 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** B0EVL7_BOMMO); contains Interpro domain(s) IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004368 NbS00010617g0012.1 protein AED:0.20 eAED:0.20 QI:557|1|1|1|1|1|4|393|624; (*GB) gi|225448982|ref|XP_002270524.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 14 [Vitis vinifera];; (*SWP) sp|Q8VZ40|PUB14_ARATH (e_value=0.0) U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1;; (*TAIR) AT3G54850.1 (e_value=0.0) | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20321524-20323848 FORWARD LENGTH=632;; (*ITAG) Solyc11g008390.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2592403-2595079 transcript_region:SL2.40ch11:2592403..2595079- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 14 (AHRD V1 **-- PUB14_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00010617g0013.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|239; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-68) hypothetical protein [Nicotiana tabacum]; NbS00012274g0004.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|3|0|312; (*GB) gi|224118410|ref|XP_002331475.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=2e-72) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=3e-76) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc06g074910.2.1 (e_value=1e-92) genomic_reference:SL2.40ch06 gene_region:42804036-42806196 transcript_region:SL2.40ch06:42804036..42806196+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00041294g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|5|0|610; (*GB) gi|225431281|ref|XP_002268784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Vitis vinifera];; (*SWP) sp|Q9FFG8|PP417_ARATH (e_value=2e-168) Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1;; (*TAIR) AT5G44230.1 (e_value=1e-169) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17814336-17816309 FORWARD LENGTH=657;; (*ITAG) Solyc02g084830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42494623-42496760 transcript_region:SL2.40ch02:42494623..42496760+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MN15_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041294g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|2|333|167; (*GB) gi|46020012|dbj|BAD13498.1| (e_value=5e-34) dehydrin [Nicotiana tabacum];; (*ITAG) Solyc02g084840.2.1 (e_value=6e-21) genomic_reference:SL2.40ch02 gene_region:42498653-42499621 transcript_region:SL2.40ch02:42498653..42499621- go_terms:GO:0009415 functional_description:"Dehydrin DHN1 (AHRD V1 *-*- DHN1_PEA); contains Interpro domain(s) IPR000167 Dehydrin "; GO:0009415 NbS00041294g0010.1 protein AED:0.29 eAED:0.37 QI:0|1|0.5|1|1|0.5|2|0|180 NbS00006178g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.76|0.95|0.8|0.80|21|358|754; (*GB) gi|225464023|ref|XP_002265454.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis vinifera];; (*SWP) sp|Q10233|RPC2_SCHPO (e_value=0.0) DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1;; (*TAIR) AT5G45140.1 (e_value=0.0) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00006178g0012.1 protein AED:0.38 eAED:0.38 QI:2|0.12|0|0.22|1|0.88|9|0|272; (*GB) gi|79529842|ref|NP_199327.4| (e_value=3e-73) DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana];; (*SWP) sp|Q54IZ9|RPC2_DICDI (e_value=2e-48) DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1;; (*TAIR) AT5G45140.1 (e_value=7e-76) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078880.1.1 (e_value=4e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59867318-59871257 transcript_region:SL2.40ch10:59867318..59871257- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00008188g0012.1 protein AED:0.33 eAED:0.35 QI:0|0.81|0.75|1|0.72|0.58|12|279|329; (*GB) gi|225429470|ref|XP_002277611.1| (e_value=6e-180) PREDICTED: pollen-specific protein SF21 [Vitis vinifera];; (*SWP) sp|O23969|SF21_HELAN (e_value=6e-138) Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1;; (*TAIR) AT5G11790.1 (e_value=1e-166) | Symbols: NDL2 | N-MYC downregulated-like 2 | chr5:3799682-3802496 FORWARD LENGTH=344;; (*ITAG) Solyc08g065430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50647221-50651909 transcript_region:SL2.40ch08:50647221..50651909- go_terms:GO:0005515 functional_description:"N-myc downstream regulated protein 3 (Fragment) (AHRD V1 *--- C8CBI7_9SMEG); contains Interpro domain(s) IPR015511 Pollen specific protein SF21 "; GO:0005515 NbS00008188g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.2|1|0.25|0|5|0|599; (*GB) gi|31323449|gb|AAP47026.1|AF375967_1 (e_value=3e-147) bell-like homeodomain protein 4 [Solanum lycopersicum];; (*SWP) sp|P48731|ATH1_ARATH (e_value=4e-85) Homeobox protein ATH1 OS=Arabidopsis thaliana GN=ATH1 PE=1 SV=1;; (*TAIR) AT4G32980.1 (e_value=3e-86) | Symbols: ATH1 | homeobox gene 1 | chr4:15914865-15916873 REVERSE LENGTH=473;; (*ITAG) Solyc08g065420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50637099-50639226 transcript_region:SL2.40ch08:50637099..50639226+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 3 (AHRD V1 *--- BLH3_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00008188g0010.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|123; (*ITAG) Solyc08g082510.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62444057-62445175 transcript_region:SL2.40ch08:62444057..62445175+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00041996g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|300; (*GB) gi|147788436|emb|CAN63304.1| (e_value=3e-50) hypothetical protein VITISV_002333 [Vitis vinifera];; (*TAIR) AT3G25070.1 (e_value=4e-11) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc12g098440.1.1 (e_value=2e-163) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64280961-64285394 transcript_region:SL2.40ch12:64280961..64285394+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X0_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbC26168452g0003.1 protein AED:0.16 eAED:0.18 QI:18|1|0.8|1|1|1|5|177|294; (*GB) gi|359480853|ref|XP_002277922.2| (e_value=1e-140) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Vitis vinifera];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=2e-98) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT4G36945.1 (e_value=9e-117) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:17420098-17422047 REVERSE LENGTH=408;; (*ITAG) Solyc02g093310.2.1 (e_value=7e-168) genomic_reference:SL2.40ch02 gene_region:48793892-48797052 transcript_region:SL2.40ch02:48793892..48797052- go_terms:GO:0023034,GO:0006629,GO:0005975 functional_description:"MAP-like protein kinase (AHRD V1 **-- O23190_ARATH); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005975 NbS00040796g0006.1 protein AED:0.33 eAED:0.33 QI:237|0.8|0.66|1|0.8|0.83|6|0|338; (*GB) gi|225452099|ref|XP_002284149.1| (e_value=0.0) PREDICTED: abhydrolase domain-containing protein FAM108B1 [Vitis vinifera];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=8e-68) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT5G38220.3 (e_value=5e-155) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15269012-15271140 FORWARD LENGTH=336;; (*ITAG) Solyc03g034270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10289116-10295741 transcript_region:SL2.40ch03:10289116..10295741- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00051060g0001.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|0.66|1|1|3|0|496; (*GB) gi|225460462|ref|XP_002267095.1| (e_value=0.0) PREDICTED: MATE efflux family protein 9-like [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=3e-47) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G71870.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr1:27032456-27034895 REVERSE LENGTH=510;; (*ITAG) Solyc11g016970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7624890-7627907 transcript_region:SL2.40ch11:7624890..7627907+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00003610g0001.1 protein AED:0.18 eAED:0.23 QI:0|1|0.83|1|1|1|6|331|463; (*GB) gi|147838831|emb|CAN67151.1| (e_value=2e-130) hypothetical protein VITISV_019728 [Vitis vinifera];; (*TAIR) AT4G30710.1 (e_value=2e-68) | Symbols: QWRF8 | Family of unknown function (DUF566) | chr4:14965538-14967881 REVERSE LENGTH=644;; (*ITAG) Solyc07g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:677311-682581 transcript_region:SL2.40ch07:677311..682581- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00008599g0002.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|224068092|ref|XP_002302663.1| (e_value=3e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G65960.1 (e_value=1e-17) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=1e-34) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00008599g0010.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=6e-23) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*ITAG) Solyc03g032050.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00004580g0007.1 protein AED:0.27 eAED:0.28 QI:295|0.69|0.64|1|0.69|0.78|14|0|532; (*GB) gi|225436520|ref|XP_002273662.1| (e_value=0.0) PREDICTED: dolichol kinase [Vitis vinifera];; (*SWP) sp|Q9UPQ8|DOLK_HUMAN (e_value=1e-25) Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1;; (*TAIR) AT3G45040.1 (e_value=2e-160) | Symbols: | phosphatidate cytidylyltransferase family protein | chr3:16472801-16475702 REVERSE LENGTH=569;; (*ITAG) Solyc06g074960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42848103-42856556 transcript_region:SL2.40ch06:42848103..42856556- go_terms:GO:0016020 functional_description:"ABC transporter G family member 3 (AHRD V1 *--- AB3G_ARATH); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0016020 NbS00055580g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|124359796|gb|ABD33026.2| (e_value=1e-19) Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula];; (*SWP) sp|Q9SWG3|FAR1_ARATH (e_value=2e-12) Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1;; (*TAIR) AT4G15090.1 (e_value=1e-13) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827;; (*ITAG) Solyc08g060840.1.1 (e_value=2e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:42815391-42818544 transcript_region:SL2.40ch08:42815391..42818544- go_terms:GO:0016563,GO:0003700 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0016563,GO:0003700 NbC25824677g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|117; (*GB) gi|225435450|ref|XP_002282821.1| (e_value=7e-48) PREDICTED: transcription factor MYB46 [Vitis vinifera];; (*SWP) sp|Q9LXV2|MYB46_ARATH (e_value=5e-46) Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1;; (*TAIR) AT3G08500.1 (e_value=7e-47) | Symbols: MYB83, AtMYB83 | myb domain protein 83 | chr3:2576958-2578072 REVERSE LENGTH=343;; (*ITAG) Solyc11g065840.1.1 (e_value=8e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48498505-48501558 transcript_region:SL2.40ch11:48498505..48501558- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q70KC5_EUCGU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00007404g0008.1 protein AED:0.17 eAED:0.17 QI:227|1|1|1|0.8|0.66|6|462|221; (*GB) gi|78191454|gb|ABB29948.1| (e_value=4e-138) vesicle transport v-SNARE 11-like [Solanum tuberosum];; (*SWP) sp|Q9LVP9|VTI13_ARATH (e_value=4e-114) Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1;; (*TAIR) AT5G39510.1 (e_value=1e-111) | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 | Vesicle transport v-SNARE family protein | chr5:15822035-15823591 FORWARD LENGTH=221;; (*ITAG) Solyc03g115760.2.1 (e_value=8e-138) genomic_reference:SL2.40ch03 gene_region:59426055-59429910 transcript_region:SL2.40ch03:59426055..59429910+ go_terms:GO:0004872 functional_description:"Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0004872 NbS00007404g0009.1 protein AED:0.07 eAED:0.07 QI:338|1|1|1|1|1|6|255|496; (*GB) gi|225457353|ref|XP_002281793.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera];; (*TAIR) AT5G07710.1 (e_value=7e-170) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:2453310-2455357 FORWARD LENGTH=468;; (*ITAG) Solyc12g036220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:29868498-29873746 transcript_region:SL2.40ch12:29868498..29873746+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00022978g0102.1 protein AED:0.17 eAED:0.17 QI:191|0|0.5|0.75|1|1|4|377|448 NbS00012901g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|169; (*GB) gi|313586501|gb|ADR71261.1| (e_value=9e-62) 60S ribosomal protein L31B [Hevea brasiliensis];; (*SWP) sp|P46290|RL31_NICGU (e_value=1e-61) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT2G19740.1 (e_value=5e-56) | Symbols: | Ribosomal protein L31e family protein | chr2:8513577-8514346 FORWARD LENGTH=119;; (*ITAG) Solyc05g008010.2.1 (e_value=5e-65) genomic_reference:SL2.40ch05 gene_region:2433806-2436121 transcript_region:SL2.40ch05:2433806..2436121- go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00012901g0005.1 protein AED:0.58 eAED:0.60 QI:13|1|0|1|1|1|2|116|18 NbS00042271g0007.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|0|0.66|3|0|425; (*GB) gi|9858771|gb|AAG01118.1|AF273333_3 (e_value=0.0) BAC19.3 [Solanum lycopersicum];; (*SWP) sp|Q54FD6|TF2B_DICDI (e_value=7e-29) Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1;; (*TAIR) AT4G36650.1 (e_value=0.0) | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related protein | chr4:17283283-17285527 REVERSE LENGTH=503;; (*ITAG) Solyc02g085470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42926826-42930305 transcript_region:SL2.40ch02:42926826..42930305- go_terms:GO:0000182 functional_description:"Transcription initiation factor IIB (AHRD V1 *-*- B5XD83_SALSA); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0000182 NbS00042271g0006.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|110; (*GB) gi|76160941|gb|ABA40434.1| (e_value=4e-27) 60s acidic ribosomal protein-like protein [Solanum tuberosum];; (*SWP) sp|P41099|RLA2_PARAR (e_value=1e-25) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.3 (e_value=9e-23) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=115;; (*ITAG) Solyc06g074430.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:42457712-42460408 transcript_region:SL2.40ch06:42457712..42460408+ go_terms:GO:0003735 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0003735 NbS00027066g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|2570523|gb|AAB82146.1| (e_value=3e-126) inorganic phosphate transporter [Solanum lycopersicum];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=9e-123) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=7e-124) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g090070.1.1 (e_value=5e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00027066g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|151428453|gb|ABS12068.1| (e_value=2e-36) high affinity phosphate transporter [Petunia x hybrida];; (*SWP) sp|Q8GYF4|PHT15_ARATH (e_value=2e-34) Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2;; (*TAIR) AT2G32830.1 (e_value=1e-35) | Symbols: PHT5, PHT1;5 | phosphate transporter 1;5 | chr2:13927754-13929657 REVERSE LENGTH=542;; (*ITAG) Solyc09g090080.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64981619-64983223 transcript_region:SL2.40ch09:64981619..64983223+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00054979g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|12006845|gb|AAG44947.1|AF290620_1 (e_value=5e-121) putative PIP2 [Nicotiana glauca];; (*SWP) sp|Q9ATM6|PIP24_MAIZE (e_value=1e-94) Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1;; (*TAIR) AT3G54820.1 (e_value=1e-94) | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsic protein 2;5 | chr3:20302117-20303738 FORWARD LENGTH=286;; (*ITAG) Solyc09g007760.2.1 (e_value=5e-96) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00028934g0007.1 protein AED:0.24 eAED:0.28 QI:57|0.76|0.71|1|0.23|0.42|14|566|487; (*GB) gi|225438483|ref|XP_002278249.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Vitis vinifera];; (*SWP) sp|Q9UTM3|RPN5_SCHPO (e_value=3e-68) 26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn5a PE=1 SV=1;; (*TAIR) AT5G09900.2 (e_value=0.0) | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory subunit, putative (RPN5) | chr5:3089462-3092434 REVERSE LENGTH=442;; (*ITAG) Solyc04g051370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49587657-49596538 transcript_region:SL2.40ch04:49587657..49596538- go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515,GO:0004175 NbS00055944g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|0.5|0.66|3|78|144; (*GB) gi|225430991|ref|XP_002278899.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100259906 [Vitis vinifera];; (*TAIR) AT5G16490.1 (e_value=9e-19) | Symbols: RIC4 | ROP-interactive CRIB motif-containing protein 4 | chr5:5384468-5385205 REVERSE LENGTH=153;; (*ITAG) Solyc11g008880.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3054418-3056230 transcript_region:SL2.40ch11:3054418..3056230- functional_description:"Wiscott-Aldrich syndrome C-terminal (AHRD V1 ***- Q2HW10_MEDTR); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00055944g0005.1 protein AED:0.24 eAED:0.24 QI:340|1|1|1|0.66|0.7|10|180|291; (*GB) gi|297735283|emb|CBI17645.3| (e_value=1e-121) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93Y38|GDT13_ARATH (e_value=1e-113) GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1;; (*TAIR) AT5G36290.2 (e_value=8e-115) | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302977-14304972 FORWARD LENGTH=293;; (*ITAG) Solyc11g008890.1.1 (e_value=2e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3059196-3063574 transcript_region:SL2.40ch11:3059196..3063574- go_terms:GO:0016020 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0016020 NbS00013194g0009.1 protein AED:0.18 eAED:0.19 QI:154|0.75|0.6|1|0.5|0.4|5|0|325; (*GB) gi|14485511|emb|CAC42086.1| (e_value=0.0) putative peroxidase [Solanum tuberosum];; (*SWP) sp|Q9SZE7|PER51_ARATH (e_value=4e-159) Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1;; (*TAIR) AT4G37530.1 (e_value=3e-160) | Symbols: | Peroxidase superfamily protein | chr4:17634786-17636082 FORWARD LENGTH=329;; (*ITAG) Solyc02g092580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48204940-48207481 transcript_region:SL2.40ch02:48204940..48207481- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** A0S5Z4_SESIN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00013194g0002.1 protein AED:0.25 eAED:0.27 QI:403|0|0.5|1|0|0.5|2|0|362; (*GB) gi|147772915|emb|CAN71564.1| (e_value=1e-141) hypothetical protein VITISV_007567 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=1e-88) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc02g064710.2.1 (e_value=1e-166) genomic_reference:SL2.40ch02 gene_region:30401767-30403081 transcript_region:SL2.40ch02:30401767..30403081+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 ***- B9DHZ5_ARATH)"; NbS00029737g0011.1 protein AED:0.07 eAED:0.10 QI:0|0.5|0|1|1|0.66|3|0|386; (*GB) gi|147839753|emb|CAN77294.1| (e_value=8e-164) hypothetical protein VITISV_033210 [Vitis vinifera];; (*SWP) sp|Q40062|IDS3_HORVU (e_value=9e-43) 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3;; (*TAIR) AT5G07480.1 (e_value=2e-130) | Symbols: KUOX1 | KAR-UP oxidoreductase 1 | chr5:2367167-2369554 FORWARD LENGTH=340;; (*ITAG) Solyc09g008560.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:2048866-2052899 transcript_region:SL2.40ch09:2048866..2052899+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00029737g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|625; (*GB) gi|359482590|ref|XP_002284545.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera];; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=3e-162) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=2e-163) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc03g093630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48603800-48605620 transcript_region:SL2.40ch03:48603800..48605620- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00029737g0014.1 protein AED:0.23 eAED:0.23 QI:68|0|0|1|0|0|3|0|222; (*ITAG) Solyc10g049530.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00000242g0006.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.45|0.81|0.8|0.81|11|783|447; (*GB) gi|225430261|ref|XP_002285072.1| (e_value=2e-168) PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis vinifera];; (*SWP) sp|Q9LFN6|RH56_ARATH (e_value=3e-168) DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2;; (*TAIR) AT5G11170.2 (e_value=5e-171) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3554272-3556646 FORWARD LENGTH=344;; (*ITAG) Solyc08g061000.2.1 (e_value=9e-173) genomic_reference:SL2.40ch08 gene_region:43548025-43554331 transcript_region:SL2.40ch08:43548025..43554331- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q1HR75_AEDAE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00030955g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|250; (*GB) gi|317106677|dbj|BAJ53180.1| (e_value=4e-67) JHL18I08.14 [Jatropha curcas];; (*TAIR) AT1G75520.1 (e_value=4e-65) | Symbols: SRS5 | SHI-related sequence 5 | chr1:28351779-28353179 REVERSE LENGTH=346;; (*ITAG) Solyc04g080970.2.1 (e_value=5e-70) genomic_reference:SL2.40ch04 gene_region:62620623-62622236 transcript_region:SL2.40ch04:62620623..62622236- functional_description:"Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00036562g0008.1 protein AED:0.07 eAED:0.08 QI:0|0.88|0.9|1|0.66|0.7|10|580|455; (*GB) gi|225455491|ref|XP_002280396.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera];; (*SWP) sp|Q9FNZ2|C3H48_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1;; (*TAIR) AT4G25440.1 (e_value=0.0) | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1 | chr4:13007107-13009381 REVERSE LENGTH=430;; (*ITAG) Solyc03g026350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8163707-8171791 transcript_region:SL2.40ch03:8163707..8171791+ go_terms:GO:0008270 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MJ15_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00012868g0002.1 protein AED:0.00 eAED:0.00 QI:125|0|0.5|1|0|0.5|2|0|752; (*GB) gi|33340511|gb|AAQ14851.1|AF321137_1 (e_value=0.0) arginine decarboxylase [Nicotiana tabacum];; (*SWP) sp|Q43075|SPE1_PEA (e_value=0.0) Arginine decarboxylase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G34710.2 (e_value=0.0) | Symbols: ADC2, SPE2, ATADC2 | arginine decarboxylase 2 | chr4:16560315-16562450 REVERSE LENGTH=711;; (*ITAG) Solyc10g054440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50892473-50894596 transcript_region:SL2.40ch10:50892473..50894596- go_terms:GO:0008792 functional_description:"Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC); contains Interpro domain(s) IPR002985 Arginine decarboxylase "; GO:0008792 NbS00012868g0009.1 protein AED:0.07 eAED:0.07 QI:205|0.8|0.83|1|1|1|6|444|303; (*GB) gi|255543887|ref|XP_002513006.1| (e_value=0.0) aldo-keto reductase, putative [Ricinus communis];; (*SWP) sp|P28475|S6PD_MALDO (e_value=5e-155) NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1;; (*TAIR) AT2G21250.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:9103408-9105116 REVERSE LENGTH=309;; (*ITAG) Solyc01g110450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88910585-88913966 transcript_region:SL2.40ch01:88910585..88913966+ go_terms:GO:0032866,GO:0032867 functional_description:"NADP dependent sorbitol 6-phosphate dehydrogenase (Fragment) (AHRD V1 **-- Q8S4S2_VAUCA); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00012868g0007.1 protein AED:0.43 eAED:0.43 QI:0|1|0.66|1|1|1|3|0|165; (*GB) gi|224085796|ref|XP_002307699.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43434|VATL_GOSHI (e_value=3e-75) V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=5e-76) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=9e-77) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00049376g0004.1 protein AED:0.30 eAED:0.30 QI:327|1|0.9|1|1|1|10|10|364; (*GB) gi|225455850|ref|XP_002273782.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera];; (*TAIR) AT1G18470.1 (e_value=3e-168) | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:6356407-6360057 REVERSE LENGTH=467;; (*ITAG) Solyc03g119760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62357400-62371990 transcript_region:SL2.40ch03:62357400..62371990- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 4 (Predicted) (AHRD V1 *--- B0KWH9_CALJA); contains Interpro domain(s) IPR019396 Transmembrane Fragile-X-F-associated protein "; GO:0008270 NbS00023688g0004.1 protein AED:0.34 eAED:0.44 QI:0|0|0|1|1|1|2|0|101; (*ITAG) Solyc06g011460.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00023688g0011.1 protein AED:0.72 eAED:0.72 QI:79|0|0|0.33|0|0.66|3|0|45 NbS00023688g0008.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.25|0.33|0|4|0|155 NbS00023688g0010.1 protein AED:0.24 eAED:0.33 QI:0|0|0|1|0|0|2|0|98; (*ITAG) Solyc01g094420.2.1 (e_value=4e-22) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00060127g0003.1 protein AED:0.02 eAED:0.02 QI:641|0.5|0.66|1|0|0.33|3|198|296; (*GB) gi|209978913|gb|ACJ04728.1| (e_value=7e-70) WRKY transcription factor-30 [Capsicum annuum];; (*SWP) sp|Q9SUP6|WRK53_ARATH (e_value=5e-25) Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1;; (*TAIR) AT4G23810.1 (e_value=4e-26) | Symbols: WRKY53, ATWRKY53 | WRKY family transcription factor | chr4:12392666-12393739 REVERSE LENGTH=324;; (*ITAG) Solyc08g008280.2.1 (e_value=4e-67) genomic_reference:SL2.40ch08 gene_region:2704613-2706561 transcript_region:SL2.40ch08:2704613..2706561- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0019900 NbS00013167g0011.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|1052; (*GB) gi|255569512|ref|XP_002525723.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G17980.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:5953596-5956745 FORWARD LENGTH=1049;; (*ITAG) Solyc01g065500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64136383-64139796 transcript_region:SL2.40ch01:64136383..64139796- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00013167g0001.1 protein AED:0.13 eAED:0.14 QI:525|0.9|0.63|1|0.8|0.72|11|0|1101; (*GB) gi|225439268|ref|XP_002265056.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261641 [Vitis vinifera];; (*SWP) sp|Q6NRS1|IBTK_XENLA (e_value=1e-35) Inhibitor of Bruton tyrosine kinase OS=Xenopus laevis GN=ibtk PE=2 SV=1;; (*TAIR) AT3G03790.2 (e_value=0.0) | Symbols: | ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein | chr3:963195-967857 FORWARD LENGTH=1081;; (*ITAG) Solyc01g056570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47598007-47606622 transcript_region:SL2.40ch01:47598007..47606622- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 *--- D0NM06_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00013167g0017.1 protein AED:0.19 eAED:0.20 QI:91|0.75|0.8|1|1|1|5|0|259; (*GB) gi|172054745|gb|ACB71202.1| (e_value=1e-117) tropinone reductase I [Anisodus acutangulus];; (*SWP) sp|P50162|TRN1_DATST (e_value=3e-117) Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1;; (*TAIR) AT1G07440.1 (e_value=8e-102) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:2286436-2287665 REVERSE LENGTH=266;; (*ITAG) Solyc10g081560.1.1 (e_value=1e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61927585-61930314 transcript_region:SL2.40ch10:61927585..61930314- go_terms:GO:0008152,GO:0055114 functional_description:"Tropinone reductase I (AHRD V1 **-- Q9AR59_SOLTU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00013167g0022.1 protein AED:0.46 eAED:0.46 QI:18|0.5|0|1|1|1|3|0|143; (*ITAG) Solyc07g015850.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00013167g0004.1 protein AED:0.42 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|128 NbS00018975g0007.1 protein AED:0.14 eAED:0.15 QI:266|1|0.75|1|1|0.75|4|0|323; (*GB) gi|133249|sp|P19684.1|ROC5_NICSY (e_value=3e-170) RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags: Precursor;; (*SWP) sp|P19684|ROC5_NICSY (e_value=9e-172) 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT3G52380.1 (e_value=8e-98) | Symbols: CP33, PDE322 | chloroplast RNA-binding protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329;; (*ITAG) Solyc01g006940.2.1 (e_value=3e-142) genomic_reference:SL2.40ch01 gene_region:1512591-1515492 transcript_region:SL2.40ch01:1512591..1515492+ go_terms:GO:0003743 functional_description:"Poly(U)-binding-splicing factor PUF60 (AHRD V1 *--* PUF60_BOVIN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003743 NbS00018975g0010.1 protein AED:0.35 eAED:0.36 QI:0|1|0.6|1|0.5|0.8|5|0|306; (*GB) gi|148595734|emb|CAM32008.1| (e_value=3e-96) YA1 [Petunia x hybrida];; (*SWP) sp|Q9M9X4|NFYA2_ARATH (e_value=2e-40) Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1;; (*TAIR) AT3G05690.1 (e_value=2e-41) | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear factor Y, subunit A2 | chr3:1676922-1678324 REVERSE LENGTH=295;; (*ITAG) Solyc01g006930.2.1 (e_value=6e-170) genomic_reference:SL2.40ch01 gene_region:1506539-1511917 transcript_region:SL2.40ch01:1506539..1511917+ go_terms:GO:0003700,GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-2 (AHRD V1 **** B6SM21_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700,GO:0016566 NbS00014969g0020.1 protein AED:0.12 eAED:0.12 QI:221|0.93|0.93|1|1|1|16|360|1317; (*GB) gi|225433494|ref|XP_002265361.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264192 [Vitis vinifera];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=5e-100) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G23670.1 (e_value=0.0) | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated kinesin-related protein, putative | chr3:8519290-8525055 FORWARD LENGTH=1313;; (*ITAG) Solyc12g098630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64412454-64421046 transcript_region:SL2.40ch12:64412454..64421046- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LUG0_ARATH); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0007018 NbS00014969g0014.1 protein AED:0.31 eAED:0.33 QI:0|0.75|0.6|0.8|0.75|0.6|5|541|238; (*GB) gi|350536287|ref|NP_001234239.1| (e_value=5e-133) cyclopropyl isomerase [Solanum lycopersicum];; (*SWP) sp|Q9M643|CCI1_ARATH (e_value=2e-112) Cycloeucalenol cycloisomerase OS=Arabidopsis thaliana GN=CPI1 PE=2 SV=1;; (*TAIR) AT5G50375.1 (e_value=1e-113) | Symbols: CPI1 | cyclopropyl isomerase | chr5:20511856-20513931 FORWARD LENGTH=280;; (*ITAG) Solyc12g098640.1.1 (e_value=8e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64422393-64426637 transcript_region:SL2.40ch12:64422393..64426637- go_terms:GO:0047793 functional_description:"Cycloeucalenol cycloisomerase (AHRD V1 **-* B6TK44_MAIZE)"; GO:0047793 NbS00014969g0016.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|125; (*GB) gi|115111006|gb|ABI84105.1| (e_value=3e-62) Rho guanine dissociation inhibitor [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=5e-35) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=4e-36) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc12g098650.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64428665-64430768 transcript_region:SL2.40ch12:64428665..64430768+ go_terms:GO:0005737 functional_description:"Rho GDP-dissociation inhibitor 1 (AHRD V1 ***- B6UCD5_MAIZE); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005737 NbS00014969g0022.1 protein AED:0.14 eAED:0.14 QI:267|0.5|0.57|1|0.5|0.42|7|398|395; (*GB) gi|224128880|ref|XP_002320444.1| (e_value=3e-94) hypothetical protein POPTRDRAFT_572918 [Populus trichocarpa];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=8e-47) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=6e-48) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc12g098620.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64406763-64409366 transcript_region:SL2.40ch12:64406763..64409366+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014969g0018.1 protein AED:0.30 eAED:0.30 QI:436|0|0.5|0.5|0|0.5|2|0|87 NbS00011152g0007.1 protein AED:0.10 eAED:0.10 QI:127|1|1|1|0.91|0.84|13|20|733; (*GB) gi|113205145|gb|AAT40494.2| (e_value=0.0) Putative microtubule-associated protein, identical [Solanum demissum];; (*SWP) sp|Q9FHM4|MA653_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1;; (*TAIR) AT5G51600.1 (e_value=0.0) | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707;; (*ITAG) Solyc11g072280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52559198-52565824 transcript_region:SL2.40ch11:52559198..52565824- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00011152g0001.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|402|147; (*GB) gi|48209896|gb|AAT40490.1| (e_value=1e-97) EF hand family protein [Solanum demissum];; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=8e-92) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=6e-93) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc11g072270.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52555099-52557686 transcript_region:SL2.40ch11:52555099..52557686- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011152g0008.1 protein AED:0.33 eAED:0.34 QI:0|0.75|0.6|1|1|0.8|5|0|223; (*GB) gi|21552979|gb|AAM62409.1|AF480487_1 (e_value=2e-148) Rar1 [Nicotiana tabacum];; (*SWP) sp|Q9SE33|RAR1_ARATH (e_value=1e-99) Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1;; (*TAIR) AT5G51700.1 (e_value=9e-101) | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein binding;zinc ion binding | chr5:21001373-21003143 REVERSE LENGTH=226;; (*ITAG) Solyc11g072290.1.1 (e_value=2e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52566220-52571191 transcript_region:SL2.40ch11:52566220..52571191- functional_description:"Cysteine and histidine-rich domain-containing protein 1 (AHRD V1 **-- C1BZK4_ESOLU); contains Interpro domain(s) IPR007051 CHORD "; NbS00020705g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc02g077730.2.1 (e_value=1e-27) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020705g0011.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|1|1|2|31|62 NbS00020705g0009.1 protein AED:0.08 eAED:0.09 QI:0|0.87|0.66|1|1|1|9|0|783; (*GB) gi|255571949|ref|XP_002526916.1| (e_value=0.0) phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=0.0) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc10g078460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59606606-59609733 transcript_region:SL2.40ch10:59606606..59609733+ go_terms:GO:0016308,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308,GO:0046488 NbS00020025g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.4|0.6|1|1|5|0|300; (*GB) gi|297741218|emb|CBI32169.3| (e_value=4e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|A2YW03|HOX27_ORYSI (e_value=3e-70) Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2;; (*TAIR) AT5G06710.1 (e_value=1e-68) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336;; (*ITAG) Solyc01g073910.2.1 (e_value=6e-121) genomic_reference:SL2.40ch01 gene_region:70493758-70495641 transcript_region:SL2.40ch01:70493758..70495641+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 *-*- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00020025g0107.1 protein AED:0.50 eAED:0.50 QI:0|0|0.5|0.5|1|1|2|93|96 NbS00020025g0108.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|132 NbS00028499g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|94; (*GB) gi|255547678|ref|XP_002514896.1| (e_value=5e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G48660.1 (e_value=1e-20) | Symbols: | Protein of unknown function (DUF 3339) | chr3:18029659-18030133 FORWARD LENGTH=89;; (*ITAG) Solyc05g015700.1.1 (e_value=5e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:11752540-11752749 transcript_region:SL2.40ch05:11752540..11752749+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00028499g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225451485|ref|XP_002271244.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100263446 [Vitis vinifera];; (*ITAG) Solyc02g094240.1.1 (e_value=6e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49413724-49414101 transcript_region:SL2.40ch02:49413724..49414101- functional_description:"Unknown Protein (AHRD V1)"; NbS00049561g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.55|0.3|0.9|0.88|0.8|10|0|497; (*GB) gi|849074|dbj|BAA09368.1| (e_value=0.0) B-type cyclin [Nicotiana tabacum];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=2e-154) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT4G37490.1 (e_value=1e-112) | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 | chr4:17622129-17624208 REVERSE LENGTH=428;; (*ITAG) Solyc10g078330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59478206-59480869 transcript_region:SL2.40ch10:59478206..59480869- go_terms:GO:0005634 functional_description:"Cyclin B-like protein (AHRD V1 ***- Q5U8T5_9SOLA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0005634 NbS00019987g0017.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.2|1|0.5|0.4|5|0|606; (*GB) gi|47900747|gb|AAT39319.1| (e_value=3e-109) Putative ankyrin repeat containing protein, identical [Solanum demissum];; (*TAIR) AT3G18670.1 (e_value=6e-34) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc09g098050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67235158-67238245 transcript_region:SL2.40ch09:67235158..67238245+ functional_description:"Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Y5262_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00019987g0014.1 protein AED:0.14 eAED:0.15 QI:80|0.73|0.68|0.93|0.6|0.62|16|29|1166; (*GB) gi|359478673|ref|XP_002281895.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267264 [Vitis vinifera];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=3e-53) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=0.0) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc11g072590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52841938-52851444 transcript_region:SL2.40ch11:52841938..52851444+ go_terms:GO:0003676,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0000166 NbS00019987g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|147 NbS00005370g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.42|0.37|0.75|1|1|8|0|237; (*GB) gi|242055217|ref|XP_002456754.1| (e_value=1e-105) hypothetical protein SORBIDRAFT_03g042030 [Sorghum bicolor];; (*TAIR) AT4G10030.1 (e_value=2e-103) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:6270490-6273098 REVERSE LENGTH=380;; (*ITAG) Solyc06g064640.2.1 (e_value=1e-128) genomic_reference:SL2.40ch06 gene_region:36668100-36682313 transcript_region:SL2.40ch06:36668100..36682313+ functional_description:"Alpha/beta hydrolase (AHRD V1 **-- D7W6X8_9FLAO); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00005370g0010.1 protein AED:0.14 eAED:0.14 QI:0|1|0.83|1|0.8|0.83|6|0|378; (*GB) gi|21311775|gb|AAM46847.1|AF498264_1 (e_value=0.0) steroleosin-B [Sesamum indicum];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=2e-31) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT4G10020.1 (e_value=0.0) | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268363-6270179 FORWARD LENGTH=389;; (*ITAG) Solyc06g064650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36682986-36685667 transcript_region:SL2.40ch06:36682986..36685667- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00006501g0015.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0.2|1|0.5|0.4|5|0|694; (*GB) gi|255547197|ref|XP_002514656.1| (e_value=1e-100) hypothetical protein RCOM_1469830 [Ricinus communis];; (*TAIR) AT5G61040.1 (e_value=4e-57) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590;; (*ITAG) Solyc03g115100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58960421-58964830 transcript_region:SL2.40ch03:58960421..58964830- functional_description:"Unknown Protein (AHRD V1)"; NbS00006501g0003.1 protein AED:0.21 eAED:0.21 QI:362|0.87|0.66|0.88|1|1|9|0|324; (*GB) gi|543867|sp|P26360.2|ATPG3_IPOBA (e_value=0.0) RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P26360|ATPG3_IPOBA (e_value=0.0) ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2;; (*TAIR) AT2G33040.1 (e_value=0.0) | Symbols: ATP3 | gamma subunit of Mt ATP synthase | chr2:14018978-14021047 REVERSE LENGTH=325;; (*ITAG) Solyc03g115110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58968179-58972603 transcript_region:SL2.40ch03:58968179..58972603- go_terms:GO:0005515 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B9SZS3_RICCO); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0005515 NbS00006501g0016.1 protein AED:0.28 eAED:0.60 QI:0|0|0|0.5|0.33|0.25|4|0|549; (*GB) gi|225457211|ref|XP_002284021.1| (e_value=1e-166) PREDICTED: presenilin-like protein At2g29900-like [Vitis vinifera];; (*SWP) sp|Q9SIK7|PSNB_ARATH (e_value=1e-133) Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1;; (*TAIR) AT2G29900.1 (e_value=8e-135) | Symbols: PS2 | Presenilin-2 | chr2:12749837-12751030 FORWARD LENGTH=397;; (*ITAG) Solyc03g115080.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:58954563-58956937 transcript_region:SL2.40ch03:58954563..58956937- go_terms:GO:0016021 functional_description:"Presenilin family protein (AHRD V1 ***- D7LLE1_ARALY); contains Interpro domain(s) IPR001108 Peptidase A22A, presenilin "; GO:0016021 NbS00006501g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|675; (*GB) gi|225457209|ref|XP_002280826.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265529 [Vitis vinifera];; (*SWP) sp|Q9VSJ8|EXOC7_DROME (e_value=4e-11) Exocyst complex component 7 OS=Drosophila melanogaster GN=exo70 PE=1 SV=2;; (*TAIR) AT5G61010.2 (e_value=2e-157) | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo70 family protein E2 | chr5:24554612-24556531 FORWARD LENGTH=639;; (*ITAG) Solyc03g115070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:58950667-58952574 transcript_region:SL2.40ch03:58950667..58952574+ go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_DROME); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00006501g0002.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|139 NbS00006256g0005.1 protein AED:0.22 eAED:0.23 QI:0|1|0.66|1|0.87|0.88|9|0|489; (*GB) gi|359479031|ref|XP_002284749.2| (e_value=1e-107) PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera];; (*SWP) sp|Q9SK03|RAP27_ARATH (e_value=7e-82) Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2;; (*TAIR) AT2G28550.2 (e_value=3e-84) | Symbols: RAP2.7, TOE1 | related to AP2.7 | chr2:12226444-12228251 REVERSE LENGTH=381;; (*ITAG) Solyc04g049800.2.1 (e_value=1e-150) genomic_reference:SL2.40ch04 gene_region:42714973-42717503 transcript_region:SL2.40ch04:42714973..42717503+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g79700 (AHRD V1 *--- AP2L3_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00042612g0002.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|548; (*GB) gi|147799808|emb|CAN68359.1| (e_value=0.0) hypothetical protein VITISV_029196 [Vitis vinifera];; (*SWP) sp|Q9C8K7|FBK21_ARATH (e_value=1e-161) F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1;; (*TAIR) AT1G51550.1 (e_value=9e-163) | Symbols: | Kelch repeat-containing F-box family protein | chr1:19117646-19119291 REVERSE LENGTH=478;; (*ITAG) Solyc06g063300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36393612-36399129 transcript_region:SL2.40ch06:36393612..36399129+ go_terms:GO:0004842 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00042612g0008.1 protein AED:0.30 eAED:0.30 QI:131|1|0.88|1|0.87|0.88|9|0|397; (*GB) gi|255555606|ref|XP_002518839.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G51560.1 (e_value=0.0) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr1:19119900-19121859 REVERSE LENGTH=392;; (*ITAG) Solyc06g063290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36385129-36391488 transcript_region:SL2.40ch06:36385129..36391488+ go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 ***- D8DKZ3_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00060144g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|170; (*GB) gi|10880961|gb|AAG24455.1|AF311746_1 (e_value=3e-36) 19 kDa oleosin [Perilla frutescens];; (*SWP) sp|Q9SS98|OLEO5_ARATH (e_value=2e-32) Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1;; (*TAIR) AT3G01570.1 (e_value=1e-33) | Symbols: | Oleosin family protein | chr3:222152-222778 REVERSE LENGTH=183;; (*ITAG) Solyc12g010920.1.1 (e_value=1e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3815832-3816769 transcript_region:SL2.40ch12:3815832..3816769+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q8LGL8_OLEEU); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00060144g0005.1 protein AED:0.00 eAED:0.00 QI:91|1|1|1|1|1|2|204|187; (*GB) gi|255536923|ref|XP_002509528.1| (e_value=3e-36) structural constituent of ribosome, putative [Ricinus communis];; (*TAIR) AT3G27160.1 (e_value=1e-32) | Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183;; (*ITAG) Solyc03g110930.2.1 (e_value=2e-69) genomic_reference:SL2.40ch03 gene_region:55709877-55712968 transcript_region:SL2.40ch03:55709877..55712968+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S21, chloroplastic (Fragment) (AHRD V1 *--- RR21_SPIOL); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00020723g0011.1 protein AED:0.24 eAED:0.24 QI:180|1|0.8|1|0.75|1|5|0|281; (*GB) gi|211853238|emb|CAP16663.1| (e_value=2e-149) tetratricopeptide repeat protein [Solanum lycopersicum];; (*SWP) sp|Q91Z38|TTC1_MOUSE (e_value=4e-42) Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1;; (*TAIR) AT4G30480.2 (e_value=5e-102) | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:14897500-14898937 FORWARD LENGTH=277;; (*ITAG) Solyc07g006180.2.1 (e_value=1e-153) genomic_reference:SL2.40ch07 gene_region:1007742-1013158 transcript_region:SL2.40ch07:1007742..1013158- go_terms:GO:0051082,GO:0031072 functional_description:"Tetratricopeptide repeat protein 4 homolog (AHRD V1 *--- TTC4_DICDI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0051082,GO:0031072 NbS00020723g0012.1 protein AED:0.00 eAED:0.00 QI:112|1|1|1|1|1|2|498|479; (*GB) gi|359473867|ref|XP_002268876.2| (e_value=1e-165) PREDICTED: probable glycosyltransferase At5g03795-like [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=6e-50) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G38040.1 (e_value=5e-63) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc07g006170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1005388-1007327 transcript_region:SL2.40ch07:1005388..1007327+ go_terms:GO:0003824 functional_description:"Exostosin-like (AHRD V1 ***- Q2HVN7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00020723g0016.1 protein AED:0.08 eAED:0.08 QI:477|0.92|0.93|1|0.78|0.8|15|307|495; (*GB) gi|224143875|ref|XP_002325105.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3V384|LACE1_MOUSE (e_value=7e-80) Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1;; (*TAIR) AT4G28070.2 (e_value=0.0) | Symbols: | AFG1-like ATPase family protein | chr4:13946009-13948462 FORWARD LENGTH=473;; (*ITAG) Solyc07g006160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:998031-1003161 transcript_region:SL2.40ch07:998031..1003161+ go_terms:GO:0016887 functional_description:"AFG1-family ATPase (AHRD V1 **** D1CU44_9RHIZ); contains Interpro domain(s) IPR005654 ATPase, AFG1-like "; GO:0016887 NbS00007796g0005.1 protein AED:0.07 eAED:0.14 QI:0|0|0|1|0.33|0.25|4|0|738; (*GB) gi|255577491|ref|XP_002529624.1| (e_value=8e-138) leucine-rich repeat containing protein, putative [Ricinus communis];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=9e-90) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=1e-54) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc04g039990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30737307-30739154 transcript_region:SL2.40ch04:30737307..30739154- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00006742g0006.1 protein AED:0.01 eAED:0.01 QI:14|1|1|1|1|1|4|234|170; (*GB) gi|357510953|ref|XP_003625765.1| (e_value=9e-67) hypothetical protein MTR_7g104020 [Medicago truncatula];; (*TAIR) AT3G09980.1 (e_value=3e-68) | Symbols: | Family of unknown function (DUF662) | chr3:3069358-3071145 FORWARD LENGTH=178;; (*ITAG) Solyc09g009210.2.1 (e_value=6e-83) genomic_reference:SL2.40ch09 gene_region:2577349-2580382 transcript_region:SL2.40ch09:2577349..2580382+ functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00032580g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.8|1|1|1|5|0|706; (*GB) gi|242043282|ref|XP_002459512.1| (e_value=0.0) hypothetical protein SORBIDRAFT_02g005910 [Sorghum bicolor];; (*SWP) sp|Q54VZ8|EXOC8_DICDI (e_value=6e-12) Exocyst complex component 8 OS=Dictyostelium discoideum GN=exoc8 PE=3 SV=2;; (*TAIR) AT1G10385.1 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc04g005850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:542180-545744 transcript_region:SL2.40ch04:542180..545744+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN92_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00047694g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|225437485|ref|XP_002274279.1| (e_value=8e-32) PREDICTED: uncharacterized protein LOC100260563 [Vitis vinifera];; (*TAIR) AT2G47485.1 (e_value=2e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:19486004-19486429 FORWARD LENGTH=141;; (*ITAG) Solyc09g075570.1.1 (e_value=5e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:62765708-62766136 transcript_region:SL2.40ch09:62765708..62766136- functional_description:"Binding protein (AHRD V1 ***- D7LGN5_ARALY)"; NbS00001524g0009.1 protein AED:0.17 eAED:0.17 QI:170|0.87|0.88|1|1|1|9|543|420; (*GB) gi|350534564|ref|NP_001234147.1| (e_value=0.0) 26S protease regulatory subunit 6A homolog [Solanum lycopersicum];; (*SWP) sp|P54776|PRS6A_SOLLC (e_value=0.0) 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1;; (*TAIR) AT3G05530.1 (e_value=0.0) | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A ATPase 5A | chr3:1603540-1605993 FORWARD LENGTH=424;; (*ITAG) Solyc01g099760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81668247-81673265 transcript_region:SL2.40ch01:81668247..81673265+ go_terms:GO:0004175 functional_description:"26S protease regulatory subunit 6A homolog (AHRD V1 ***- PRS6A_SOLLC); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0004175 NbS00001524g0010.1 protein AED:0.28 eAED:0.28 QI:254|0.68|0.7|0.95|0.57|0.6|20|258|607; (*GB) gi|359487632|ref|XP_003633626.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: heparan-alpha-glucosaminide N-acetyltransferase-like [Vitis vinifera];; (*SWP) sp|Q43582|LSM4_TOBAC (e_value=3e-44) Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G27730.1 (e_value=2e-177) | Symbols: | Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472;; (*ITAG) Solyc01g099750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81661020-81665918 transcript_region:SL2.40ch01:81661020..81665918+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00013753g0003.1 protein AED:0.08 eAED:0.16 QI:0|1|0|1|1|1|2|0|429; (*GB) gi|224146126|ref|XP_002325889.1| (e_value=2e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GX29|SKI25_ARATH (e_value=8e-75) F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1;; (*TAIR) AT1G31350.1 (e_value=6e-76) | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221519-11222706 REVERSE LENGTH=395;; (*ITAG) Solyc01g081210.2.1 (e_value=5e-175) genomic_reference:SL2.40ch01 gene_region:73006448-73008180 transcript_region:SL2.40ch01:73006448..73008180- functional_description:"F-box/kelch-repeat protein At1g22040 (AHRD V1 ***- FBK8_ARATH); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00054777g0003.1 protein AED:0.20 eAED:0.20 QI:94|1|0.83|1|1|1|6|0|535; (*GB) gi|332071136|gb|AED99886.1| (e_value=0.0) glycosyltransferase [Panax notoginseng];; (*SWP) sp|B0X1Q4|RUMI_CULQU (e_value=4e-25) O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1;; (*TAIR) AT5G23850.1 (e_value=0.0) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH=542;; (*ITAG) Solyc03g025760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7530681-7535061 transcript_region:SL2.40ch03:7530681..7535061- functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8RT95_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00016178g0010.1 protein AED:0.28 eAED:0.29 QI:191|0|0.33|1|0.5|0.66|3|0|270; (*GB) gi|296088921|emb|CBI38481.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23491|PP315_ARATH (e_value=1e-55) Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2;; (*TAIR) AT4G16470.1 (e_value=8e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9287862-9289541 REVERSE LENGTH=501;; (*ITAG) Solyc04g009000.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2579236-2581365 transcript_region:SL2.40ch04:2579236..2581365- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00016178g0007.1 protein AED:0.48 eAED:0.57 QI:0|0|0|0.8|1|1|5|0|145; (*GB) gi|296088921|emb|CBI38481.3| (e_value=9e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81263|KITH_ORYSJ (e_value=9e-15) Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2;; (*TAIR) AT5G23070.1 (e_value=3e-14) | Symbols: | Thymidine kinase | chr5:7741979-7742827 FORWARD LENGTH=282;; (*ITAG) Solyc11g012480.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5312806-5318311 transcript_region:SL2.40ch11:5312806..5318311+ go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- B9IH47_POPTR); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00029175g0001.1 protein AED:0.38 eAED:0.38 QI:555|0|0.5|1|0|0.5|2|0|226; (*GB) gi|83283971|gb|ABC01893.1| (e_value=1e-125) vernalization independence 3-like protein [Solanum tuberosum];; (*SWP) sp|Q6P5M2|WDR61_DANRE (e_value=1e-47) WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1;; (*TAIR) AT4G29830.1 (e_value=8e-98) | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321;; (*ITAG) Solyc12g009030.1.1 (e_value=7e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2329781-2333073 transcript_region:SL2.40ch12:2329781..2333073+ functional_description:"WD repeat-containing protein 61 (AHRD V1 **-- B5XGQ3_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00010061g0108.1 protein AED:0.03 eAED:0.03 QI:0|0.33|0|1|1|1|4|0|574 NbS00004820g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|255538794|ref|XP_002510462.1| (e_value=1e-54) Dehydration-responsive element-binding protein 2G, putative [Ricinus communis];; (*SWP) sp|Q9LQZ2|DRE2D_ARATH (e_value=2e-39) Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1;; (*TAIR) AT1G75490.1 (e_value=2e-40) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:28336045-28336665 FORWARD LENGTH=206;; (*ITAG) Solyc04g080910.1.1 (e_value=8e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62552994-62553740 transcript_region:SL2.40ch04:62552994..62553740+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00004820g0010.1 protein AED:0.30 eAED:0.33 QI:232|0.44|0.5|1|0.66|0.6|10|510|482; (*GB) gi|147782291|emb|CAN60824.1| (e_value=2e-69) hypothetical protein VITISV_037057 [Vitis vinifera];; (*SWP) sp|A8LK09|OBG_DINSH (e_value=3e-18) GTPase obg OS=Dinoroseobacter shibae (strain DFL 12) GN=obg PE=3 SV=1;; (*TAIR) AT1G06060.1 (e_value=1e-41) | Symbols: | LisH and RanBPM domains containing protein | chr1:1833071-1834516 FORWARD LENGTH=213;; (*ITAG) Solyc04g080900.2.1 (e_value=3e-141) genomic_reference:SL2.40ch04 gene_region:62536299-62548561 transcript_region:SL2.40ch04:62536299..62548561+ go_terms:GO:0006508,GO:0005525,GO:0005622 functional_description:"GTPase obg (AHRD V1 *-*- D1C1Q0_SPHTD); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0006508,GO:0005525,GO:0005622 NbS00032038g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|0|0|2|0|258; (*GB) gi|283795008|ref|YP_003359399.1| (e_value=1e-82) ribosomal protein L2 (chloroplast) [Olea europaea];; (*SWP) sp|P21434|RK2_NICDE (e_value=5e-83) 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=7e-81) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=7e-83) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00032038g0002.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|0|0|2|0|67 NbS00054312g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|572; (*GB) gi|224104375|ref|XP_002313416.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=0.0) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc11g008940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3093524-3095482 transcript_region:SL2.40ch11:3093524..3095482+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054312g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|133; (*GB) gi|255564172|ref|XP_002523083.1| (e_value=4e-41) catalytic, putative [Ricinus communis];; (*TAIR) AT3G62810.1 (e_value=9e-36) | Symbols: | complex 1 family protein / LVR family protein | chr3:23227763-23228180 FORWARD LENGTH=106;; (*ITAG) Solyc09g075100.2.1 (e_value=6e-60) genomic_reference:SL2.40ch09 gene_region:62402390-62405936 transcript_region:SL2.40ch09:62402390..62405936+ go_terms:GO:0003824 functional_description:"Catalytic/ oxidoreductase acting on NADH or NADPH (AHRD V1 **** B6U636_MAIZE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0003824 NbS00020951g0004.1 protein AED:0.28 eAED:0.31 QI:0|0|0.25|1|0.33|0.25|4|742|519; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=7e-45) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=8e-37) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*ITAG) Solyc04g072200.1.1 (e_value=7e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56792510-56794669 transcript_region:SL2.40ch04:56792510..56794669+ functional_description:"FRIGIDA (AHRD V1 *-*- B0Z0D2_ARALY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00005744g0016.1 protein AED:0.08 eAED:0.08 QI:1157|0.76|0.71|1|0.76|0.57|14|0|842; (*GB) gi|147783617|emb|CAN68138.1| (e_value=0.0) hypothetical protein VITISV_035655 [Vitis vinifera];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT2G43900.1 (e_value=0.0) | Symbols: | Endonuclease/exonuclease/phosphatase family protein | chr2:18178801-18183823 REVERSE LENGTH=1316;; (*ITAG) Solyc08g014580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4700365-4706701 transcript_region:SL2.40ch08:4700365..4706701- go_terms:GO:0004437 functional_description:"Inositol-1,4,5-trisphosphate 5-phosphatase 1 (AHRD V1 *-** SYJ1_SCHPO); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00005744g0012.1 protein AED:0.30 eAED:0.30 QI:129|0.75|0.6|1|0.75|0.6|5|459|205; (*GB) gi|359473246|ref|XP_002269864.2| (e_value=4e-85) PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3ED65|MENG_ARATH (e_value=2e-74) 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2;; (*TAIR) AT1G23360.1 (e_value=1e-75) | Symbols: MENG | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8295421-8296893 REVERSE LENGTH=261;; (*ITAG) Solyc12g019010.1.1 (e_value=3e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:8972390-8979717 transcript_region:SL2.40ch12:8972390..8979717- go_terms:GO:0008168 functional_description:"Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (AHRD V1 ***- Q0ICA4_SYNS3); contains Interpro domain(s) IPR004033 UbiE/COQ5 methyltransferase "; GO:0008168 NbS00005744g0018.1 protein AED:0.30 eAED:0.31 QI:0|0.25|0|1|0.5|0.2|5|0|535; (*GB) gi|359478231|ref|XP_002279889.2| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=1e-115) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc12g019060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9071679-9076116 transcript_region:SL2.40ch12:9071679..9076116+ functional_description:"Ankyrin repeat domain protein (AHRD V1 *--- Q4EBT3_9RICK); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00005744g0221.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|390 NbS00005744g0220.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0|1|0|0.25|4|0|363 NbS00005744g0219.1 protein AED:0.28 eAED:0.28 QI:0|0.92|0.85|1|0.74|0.75|28|530|982 NbS00005744g0222.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|391 NbS00019962g0005.1 protein AED:0.00 eAED:0.00 QI:177|1|1|1|1|1|2|98|330; (*GB) gi|147855038|emb|CAN82378.1| (e_value=3e-170) hypothetical protein VITISV_036229 [Vitis vinifera];; (*SWP) sp|Q55EQ3|Y9086_DICDI (e_value=6e-16) Uncharacterized abhydrolase domain-containing protein DDB_G0269086 OS=Dictyostelium discoideum GN=DDB_G0269086 PE=1 SV=2;; (*TAIR) AT5G19290.1 (e_value=4e-167) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6494113-6495105 FORWARD LENGTH=330;; (*ITAG) Solyc05g056000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64542811-64544762 transcript_region:SL2.40ch05:64542811..64544762+ go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00019962g0006.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|0|491; (*GB) gi|296086335|emb|CBI31776.3| (e_value=1e-169) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LNG5|PPP7L_ARATH (e_value=6e-27) Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1;; (*TAIR) AT2G04865.1 (e_value=1e-139) | Symbols: | Aminotransferase-like, plant mobile domain family protein | chr2:1712149-1714599 FORWARD LENGTH=667;; (*ITAG) Solyc05g056010.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64545461-64548066 transcript_region:SL2.40ch05:64545461..64548066- functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 **-- D7U0L7_VITVI); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00046265g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|65; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=3e-16) hypothetical protein [Nicotiana tabacum]; NbS00009455g0005.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|5|0|219; (*GB) gi|1346155|sp|P49357.1|GLYM_FLAPR (e_value=2e-97) RecName: Full=Serine hydroxymethyltransferase 1, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor;; (*SWP) sp|P49357|GLYM_FLAPR (e_value=5e-99) Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1;; (*TAIR) AT5G26780.1 (e_value=2e-94) | Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=517;; (*ITAG) Solyc04g076790.2.1 (e_value=4e-108) genomic_reference:SL2.40ch04 gene_region:59263823-59269610 transcript_region:SL2.40ch04:59263823..59269610+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9SMX7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00009455g0006.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|134142069|gb|ABO61378.1| (e_value=3e-36) mitochondrial serine hydroxymethyltransferase [Populus tremuloides];; (*SWP) sp|P50433|GLYM_SOLTU (e_value=1e-37) Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G37930.1 (e_value=1e-36) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517;; (*ITAG) Solyc04g076790.2.1 (e_value=2e-40) genomic_reference:SL2.40ch04 gene_region:59263823-59269610 transcript_region:SL2.40ch04:59263823..59269610+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9SMX7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00009455g0007.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|72; (*GB) gi|297808701|ref|XP_002872234.1| (e_value=2e-31) hypothetical protein ARALYDRAFT_489509 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P34899|GLYM_PEA (e_value=6e-32) Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT5G26780.1 (e_value=5e-34) | Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=517;; (*ITAG) Solyc04g076790.2.1 (e_value=1e-35) genomic_reference:SL2.40ch04 gene_region:59263823-59269610 transcript_region:SL2.40ch04:59263823..59269610+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9SMX7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00016863g0011.1 protein AED:0.25 eAED:0.27 QI:48|0.25|0.11|1|0.37|0.44|9|0|478; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=9e-26) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41905608-41910016 transcript_region:SL2.40ch06:41905608..41910016+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00016863g0012.1 protein AED:0.23 eAED:0.25 QI:0|0.66|0.54|1|0.71|0.81|22|327|1053; (*GB) gi|225464350|ref|XP_002273318.1| (e_value=0.0) PREDICTED: structural maintenance of chromosomes protein 3-like [Vitis vinifera];; (*SWP) sp|P97690|SMC3_RAT (e_value=3e-103) Structural maintenance of chromosomes protein 3 OS=Rattus norvegicus GN=Smc3 PE=1 SV=1;; (*TAIR) AT2G27170.2 (e_value=0.0) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00016863g0008.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|255579150|ref|XP_002530422.1| (e_value=1e-66) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=2e-61) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=6e-63) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc07g065710.2.1 (e_value=1e-79) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00031655g0011.1 protein AED:0.07 eAED:0.07 QI:75|1|1|1|1|1|3|303|531; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=5e-91) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-69) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=2e-41) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc12g042440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43141897-43148675 transcript_region:SL2.40ch12:43141897..43148675- functional_description:"FRIGIDA (AHRD V1 *-*- Q52S96_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00031655g0012.1 protein AED:0.09 eAED:0.16 QI:52|0|0|1|0|0.16|6|0|421; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-114) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g097030.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:79765927-79769298 transcript_region:SL2.40ch01:79765927..79769298- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SR14_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00031655g0002.1 protein AED:0.12 eAED:0.12 QI:156|1|1|1|0|0.5|2|216|332; (*GB) gi|134307091|gb|ABO72543.1| (e_value=0.0) inositol polyphosphate multikinase [Solanum tuberosum];; (*SWP) sp|Q9FLT2|IPMKB_ARATH (e_value=3e-126) Inositol polyphosphate multikinase beta OS=Arabidopsis thaliana GN=IPK2b PE=1 SV=1;; (*TAIR) AT5G61760.1 (e_value=2e-127) | Symbols: ATIPK2BETA, IPK2B, IPK2BETA | inositol polyphosphate kinase 2 beta | chr5:24813916-24814818 REVERSE LENGTH=300;; (*ITAG) Solyc12g042430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43139588-43140691 transcript_region:SL2.40ch12:43139588..43140691+ go_terms:GO:0008440 functional_description:"Inositol hexakisphosphate kinase 3 (AHRD V1 *-*- Q5TAQ4_HUMAN); contains Interpro domain(s) IPR005522 Inositol polyphosphate kinase "; GO:0008440 NbS00031608g0008.1 protein AED:0.11 eAED:0.16 QI:0|0.33|0|1|0.33|0.25|4|0|607; (*GB) gi|305632921|dbj|BAJ16176.1| (e_value=0.0) GDP-mannose 4,6-dehydratase [Nicotiana tabacum];; (*SWP) sp|P93031|GMD2_ARATH (e_value=0.0) GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3;; (*TAIR) AT3G51160.1 (e_value=0.0) | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19007232-19008353 REVERSE LENGTH=373;; (*ITAG) Solyc03g118270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61240383-61241474 transcript_region:SL2.40ch03:61240383..61241474+ go_terms:GO:0008446 functional_description:"GDP-mannose 4 6-dehydratase (AHRD V1 **** B7XH28_NICBE); contains Interpro domain(s) IPR006368 GDP-mannose 4,6-dehydratase "; GO:0008446 NbS00031608g0003.1 protein AED:0.24 eAED:0.24 QI:386|1|1|1|0.87|0.77|9|403|325; (*GB) gi|6288682|gb|AAF06696.1|AF031487_1 (e_value=0.0) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=7e-148) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT3G12250.2 (e_value=3e-145) | Symbols: TGA6, BZIP45 | TGACG motif-binding factor 6 | chr3:3906351-3908583 FORWARD LENGTH=330;; (*ITAG) Solyc11g064950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00005727g0004.1 protein AED:0.29 eAED:0.32 QI:0|0|0|1|1|1|2|0|391; (*GB) gi|350536739|ref|NP_001234774.1| (e_value=0.0) subtilisin-like protease precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-82) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=3e-92) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00005727g0007.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|258; (*GB) gi|169674674|gb|ACA64703.1| (e_value=3e-97) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-37) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=3e-40) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087740.1.1 (e_value=4e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00005727g0008.1 protein AED:0.30 eAED:0.30 QI:0|1|0.87|1|1|1|8|0|381; (*GB) gi|224059600|ref|XP_002299927.1| (e_value=4e-174) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12470.1 (e_value=2e-150) | Symbols: | Protein of unknown function (DUF3411) | chr5:4044950-4047290 REVERSE LENGTH=386;; (*ITAG) Solyc01g087750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74432516-74437097 transcript_region:SL2.40ch01:74432516..74437097- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q015C3_OSTTA)"; NbS00037959g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.91|0.88|0.96|0.91|0.88|25|0|1411; (*GB) gi|255569339|ref|XP_002525637.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q7PC88|AB31G_ARATH (e_value=0.0) ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1;; (*TAIR) AT2G29940.1 (e_value=0.0) | Symbols: PDR3, ATPDR3 | pleiotropic drug resistance 3 | chr2:12760139-12766455 FORWARD LENGTH=1426;; (*ITAG) Solyc06g076930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44195038-44207721 transcript_region:SL2.40ch06:44195038..44207721+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 31 (AHRD V1 ***- AB31G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00025310g0003.1 protein AED:0.26 eAED:0.30 QI:504|1|0.92|1|0.83|0.76|13|0|550; (*GB) gi|255538292|ref|XP_002510211.1| (e_value=0.0) serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q2LZZ7|TRC_DROPS (e_value=1e-146) Serine/threonine-protein kinase tricorner OS=Drosophila pseudoobscura pseudoobscura GN=trc PE=3 SV=1;; (*TAIR) AT5G09890.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:3085810-3088842 REVERSE LENGTH=515;; (*ITAG) Solyc04g078870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61124391-61131156 transcript_region:SL2.40ch04:61124391..61131156+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00044590g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|3|0|248; (*GB) gi|118482189|gb|ABK93023.1| (e_value=2e-54) unknown [Populus trichocarpa];; (*TAIR) AT4G35070.2 (e_value=3e-32) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:16694576-16695387 FORWARD LENGTH=210;; (*ITAG) Solyc10g055560.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52439261-52440158 transcript_region:SL2.40ch10:52439261..52440158+ go_terms:GO:0051536,GO:0008270 functional_description:"Baculoviral IAP repeat-containing 3 (AHRD V1 *--- A2CGA5_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0051536,GO:0008270 NbS00002877g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.83|0.57|1|0.83|0.71|7|0|712; (*GB) gi|224103837|ref|XP_002313213.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9FME8|OPT4_ARATH (e_value=0.0) Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1;; (*TAIR) AT5G64410.1 (e_value=0.0) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc04g076750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00022476g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.71|1|0.5|0.57|7|0|241; (*GB) gi|5070138|gb|AAD39034.1|AF068722_1 (e_value=6e-136) MADS-box protein MADS3 [Nicotiana sylvestris];; (*SWP) sp|Q03489|AGL9_PETHY (e_value=2e-136) Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2;; (*TAIR) AT1G24260.2 (e_value=8e-101) | Symbols: SEP3, AGL9 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=251;; (*ITAG) Solyc05g015750.2.1 (e_value=9e-136) genomic_reference:SL2.40ch05 gene_region:11898903-11905313 transcript_region:SL2.40ch05:11898903..11905313- go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor MADS-box 2 (AHRD V1 **** D5HSY6_9ROSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00018443g0009.1 protein AED:0.00 eAED:0.00 QI:215|1|1|1|1|1|4|0|118; (*GB) gi|356496906|ref|XP_003517306.1| (e_value=1e-37) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=1e-17) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT4G36945.1 (e_value=5e-37) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:17420098-17422047 REVERSE LENGTH=408;; (*ITAG) Solyc02g093310.2.1 (e_value=2e-62) genomic_reference:SL2.40ch02 gene_region:48793892-48797052 transcript_region:SL2.40ch02:48793892..48797052- go_terms:GO:0023034,GO:0006629,GO:0005975 functional_description:"MAP-like protein kinase (AHRD V1 **-- O23190_ARATH); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005975 NbS00018443g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|3|0|249; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=9e-48) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*TAIR) AT5G67080.1 (e_value=1e-46) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc02g090990.1.1 (e_value=5e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47018848-47019918 transcript_region:SL2.40ch02:47018848..47019918+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 ***- STK36_PONAB); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018443g0008.1 protein AED:0.16 eAED:0.16 QI:71|1|0.66|1|1|1|3|0|322; (*GB) gi|255538264|ref|XP_002510197.1| (e_value=2e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G45688.1 (e_value=2e-95) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342;; (*ITAG) Solyc02g091000.2.1 (e_value=6e-160) genomic_reference:SL2.40ch02 gene_region:47025388-47027277 transcript_region:SL2.40ch02:47025388..47027277- functional_description:"Harpin-induced protein (AHRD V1 ***- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00021159g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|57013977|ref|YP_173449.1| (e_value=2e-38) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00036739g0006.1 protein AED:0.17 eAED:0.17 QI:142|0.62|0.77|1|0.75|0.77|9|303|213; (*GB) gi|269969916|gb|ACZ54947.1| (e_value=2e-59) type 2 histone deacetylase c [Nicotiana tabacum];; (*SWP) sp|Q6V9I6|HDT1_SOLCH (e_value=1e-43) Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1;; (*TAIR) AT3G44750.2 (e_value=6e-17) | Symbols: HDA3 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=242;; (*ITAG) Solyc10g085560.1.1 (e_value=2e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64003050-64006740 transcript_region:SL2.40ch10:64003050..64006740- go_terms:GO:0005622 functional_description:"Histone deacetylase 2a-like (AHRD V1 ***- Q2XTE1_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00032594g0012.1 protein AED:0.05 eAED:0.07 QI:0|1|0|1|0|0|2|0|144; (*GB) gi|187940291|gb|ACD39376.1| (e_value=2e-54) NAC domain protein [Glycine max];; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=4e-22) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G64530.1 (e_value=4e-47) | Symbols: ANAC104, XND1 | xylem NAC domain 1 | chr5:25795360-25796699 FORWARD LENGTH=187;; (*ITAG) Solyc10g047060.1.1 (e_value=9e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:34778791-34780357 transcript_region:SL2.40ch10:34778791..34780357+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GZS1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00032594g0011.1 protein AED:0.32 eAED:0.32 QI:53|0.66|0.68|0.93|0.6|0.75|16|0|710; (*GB) gi|225447799|ref|XP_002266729.1| (e_value=0.0) PREDICTED: dynamin-like protein ARC5 [Vitis vinifera];; (*SWP) sp|Q84N64|ARC5_ARATH (e_value=0.0) Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2;; (*TAIR) AT3G19720.1 (e_value=0.0) | Symbols: ARC5, DRP5B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6850591-6855389 REVERSE LENGTH=777;; (*ITAG) Solyc10g047050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:34721978-34741037 transcript_region:SL2.40ch10:34721978..34741037+ go_terms:GO:0005525 functional_description:"Dynamin-like protein (AHRD V1 ***- Q84N64_ARATH); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00049610g0005.1 protein AED:0.29 eAED:0.29 QI:0|0.45|0.5|0.83|0.54|0.41|12|289|604; (*GB) gi|359475978|ref|XP_002280050.2| (e_value=0.0) PREDICTED: putative copper-transporting ATPase PAA1-like [Vitis vinifera];; (*SWP) sp|B9DFX7|HMA8_ARATH (e_value=0.0) Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 PE=2 SV=1;; (*TAIR) AT5G21930.2 (e_value=0.0) | Symbols: PAA2, HMA8 | P-type ATPase of Arabidopsis 2 | chr5:7243129-7248721 FORWARD LENGTH=883;; (*ITAG) Solyc08g061610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46389278-46410833 transcript_region:SL2.40ch08:46389278..46410833- go_terms:GO:0004008 functional_description:"Copper-exporting P-type ATPase A (AHRD V1 **** COPA_STAES); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00014962g0001.1 protein AED:0.36 eAED:0.36 QI:0|0.33|0|0.5|1|1|4|0|105; (*GB) gi|147766885|emb|CAN67530.1| (e_value=1e-49) hypothetical protein VITISV_004311 [Vitis vinifera];; (*SWP) sp|Q9ZR07|FRDA_ARATH (e_value=2e-43) Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=2 SV=2;; (*TAIR) AT4G03240.1 (e_value=2e-44) | Symbols: ATFH, FH | frataxin homolog | chr4:1423685-1424758 REVERSE LENGTH=187;; (*ITAG) Solyc07g053150.2.1 (e_value=1e-60) genomic_reference:SL2.40ch07 gene_region:58924678-58929922 transcript_region:SL2.40ch07:58924678..58929922- go_terms:GO:0008198,GO:0034986 functional_description:"Protein cyaY (AHRD V1 *-*- A8EZC3_RICCK); contains Interpro domain(s) IPR001794 Frataxin, subgroup "; GO:0008198,GO:0034986 NbS00014962g0002.1 protein AED:0.04 eAED:0.04 QI:265|0|0.5|1|0|1|2|603|163; (*GB) gi|147766884|emb|CAN67529.1| (e_value=3e-35) hypothetical protein VITISV_004310 [Vitis vinifera];; (*TAIR) AT4G27310.1 (e_value=5e-32) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc07g053140.2.1 (e_value=5e-49) genomic_reference:SL2.40ch07 gene_region:58916635-58917931 transcript_region:SL2.40ch07:58916635..58917931+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00014962g0010.1 protein AED:0.24 eAED:0.37 QI:0|0|0|1|0|0|4|0|240; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=7e-42) hypothetical protein [Nicotiana tabacum]; NbC26043054g0003.1 protein AED:0.53 eAED:0.65 QI:0|0.25|0.2|1|1|0.8|5|0|165; (*GB) gi|31980091|emb|CAD98760.1| (e_value=3e-47) MYB transcription factor R3 type [Populus tremula x Populus tremuloides];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=8e-38) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT5G02320.2 (e_value=2e-45) | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548;; (*ITAG) Solyc09g010820.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00020655g0004.1 protein AED:0.56 eAED:0.78 QI:0|0|0|0.5|1|0.75|4|0|130; (*GB) gi|356497524|ref|XP_003517610.1| (e_value=4e-85) PREDICTED: chaperone protein dnaJ 10-like [Glycine max];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=1e-80) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G76700.1 (e_value=9e-82) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:28780619-28783022 REVERSE LENGTH=398;; (*ITAG) Solyc12g095800.1.1 (e_value=8e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63260262-63268516 transcript_region:SL2.40ch12:63260262..63268516- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 ***- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00009943g0014.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|4|324|254; (*GB) gi|302142216|emb|CBI19419.3| (e_value=4e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=1e-23) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT5G43140.1 (e_value=6e-89) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321570-17323224 FORWARD LENGTH=254;; (*ITAG) Solyc12g088420.1.1 (e_value=1e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62246694-62249859 transcript_region:SL2.40ch12:62246694..62249859- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B6U5S2_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00009943g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|147782531|emb|CAN68429.1| (e_value=1e-74) hypothetical protein VITISV_012133 [Vitis vinifera];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=2e-47) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT4G37320.1 (e_value=4e-47) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc12g088460.1.1 (e_value=7e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62264219-62265748 transcript_region:SL2.40ch12:62264219..62265748- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009943g0009.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|190; (*GB) gi|225458768|ref|XP_002285105.1| (e_value=2e-83) PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera];; (*SWP) sp|Q9FG65|C81D1_ARATH (e_value=1e-56) Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1;; (*TAIR) AT1G66540.1 (e_value=2e-66) | Symbols: | Cytochrome P450 superfamily protein | chr1:24824837-24826502 FORWARD LENGTH=386;; (*ITAG) Solyc12g088510.1.1 (e_value=2e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62283425-62284954 transcript_region:SL2.40ch12:62283425..62284954+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009943g0017.1 protein AED:0.09 eAED:0.09 QI:119|0.87|1|1|1|1|9|458|551; (*GB) gi|224145000|ref|XP_002325490.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJN0|RH17_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1;; (*TAIR) AT2G40700.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16976783-16979392 FORWARD LENGTH=609;; (*ITAG) Solyc07g042270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52721295-52727955 transcript_region:SL2.40ch07:52721295..52727955- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** C6LZE8_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00009943g0019.1 protein AED:0.19 eAED:0.19 QI:0|1|0.25|1|0.66|0.75|4|0|459; (*GB) gi|225465688|ref|XP_002272694.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251105 [Vitis vinifera];; (*TAIR) AT5G23200.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7807319-7808988 FORWARD LENGTH=399;; (*ITAG) Solyc12g088450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62259095-62263686 transcript_region:SL2.40ch12:62259095..62263686+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD15 (AHRD V1 ***- Q9FMY0_ARATH)"; NbS00009943g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|302142224|emb|CBI19427.3| (e_value=1e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27700.1 (e_value=2e-25) | Symbols: | Syntaxin/t-SNARE family protein | chr1:9640394-9641752 REVERSE LENGTH=297;; (*ITAG) Solyc12g088440.1.1 (e_value=3e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62254920-62257875 transcript_region:SL2.40ch12:62254920..62257875+ go_terms:GO:0016020 functional_description:"Clathrin-coat assembly protein-like (AHRD V1 **-- Q6Z9Z3_ORYSJ); contains Interpro domain(s) IPR015260 Syntaxin 6, N-terminal "; GO:0016020 NbS00005008g0012.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|6|196|320; (*GB) gi|225452304|ref|XP_002272292.1| (e_value=0.0) PREDICTED: glucuronokinase 1 [Vitis vinifera];; (*SWP) sp|Q93ZC9|GLAK1_ARATH (e_value=3e-173) Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1;; (*TAIR) AT3G01640.1 (e_value=2e-174) | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362;; (*ITAG) Solyc02g093440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold "; GO:0004335 NbS00005008g0017.1 protein AED:0.20 eAED:0.20 QI:389|0.71|0.62|1|1|1|8|280|667; (*GB) gi|359488775|ref|XP_002271722.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT9-like [Vitis vinifera];; (*SWP) sp|Q8VZV7|PMT9_ARATH (e_value=0.0) Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1;; (*TAIR) AT5G14430.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4653092-4655741 FORWARD LENGTH=612;; (*ITAG) Solyc02g067890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32557610-32561836 transcript_region:SL2.40ch02:32557610..32561836- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00005008g0016.1 protein AED:0.20 eAED:0.20 QI:0|0.72|0.58|0.91|1|1|12|0|427; (*GB) gi|224140869|ref|XP_002323801.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTY6|UKL5_ARATH (e_value=0.0) Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2 SV=1;; (*TAIR) AT3G27440.1 (e_value=0.0) | Symbols: UKL5 | uridine kinase-like 5 | chr3:10155555-10157931 FORWARD LENGTH=465;; (*ITAG) Solyc02g067880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32548167-32551632 transcript_region:SL2.40ch02:32548167..32551632- go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9IJL7_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00022720g0006.1 protein AED:0.48 eAED:0.86 QI:0|0|0|0.75|1|1|4|0|97 NbS00022720g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=3e-43) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-35) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=3e-34) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc01g091110.2.1 (e_value=3e-95) genomic_reference:SL2.40ch01 gene_region:76583261-76584010 transcript_region:SL2.40ch01:76583261..76584010- go_terms:GO:0046910 functional_description:"Pectinesterase/pectinesterase inhibitor 3 (AHRD V1 **** PME3_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00022720g0002.1 protein AED:0.19 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|481; (*GB) gi|225453995|ref|XP_002280629.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250526 isoform 2 [Vitis vinifera];; (*TAIR) AT2G45260.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00022720g0008.1 protein AED:0.35 eAED:0.48 QI:0|0|0|0.66|0|0.66|3|0|183; (*GB) gi|57013974|ref|YP_173446.1| (e_value=1e-52) hypothetical protein NitaMp108 [Nicotiana tabacum]; NbS00030945g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|378; (*GB) gi|297743459|emb|CBI36326.3| (e_value=2e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZQG9|E1314_ARATH (e_value=8e-100) Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2;; (*TAIR) AT3G15800.1 (e_value=3e-166) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:5345051-5346988 FORWARD LENGTH=399;; (*ITAG) Solyc06g073710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41862446-41863987 transcript_region:SL2.40ch06:41862446..41863987+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00054316g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|152; (*GB) gi|469070|dbj|BAA03741.1| (e_value=2e-50) RNA-binding glycine-rich protein-1a [Nicotiana sylvestris];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=1e-47) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=4e-44) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc01g109660.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:88321513-88322795 transcript_region:SL2.40ch01:88321513..88322795+ go_terms:GO:0008266 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbC23797745g0001.1 protein AED:0.07 eAED:0.07 QI:10|1|0.5|1|0|0|2|0|34; (*GB) gi|385302952|gb|EIF47055.1| (e_value=8e-15) vacuolar atp synthase subunit b [Dekkera bruxellensis AWRI1499];; (*SWP) sp|Q8W4E2|VATB3_ARATH (e_value=3e-16) V-type proton ATPase subunit B3 OS=Arabidopsis thaliana GN=VHA-B3 PE=2 SV=1;; (*TAIR) AT1G20260.1 (e_value=2e-17) | Symbols: | ATPase, V1 complex, subunit B protein | chr1:7016971-7020290 FORWARD LENGTH=487;; (*ITAG) Solyc10g055670.1.1 (e_value=2e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52650953-52660235 transcript_region:SL2.40ch10:52650953..52660235+ go_terms:GO:0033180,GO:0005524,GO:0033178,GO:0016469 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0033180,GO:0005524,GO:0033178,GO:0016469 NbS00042407g0006.1 protein AED:0.40 eAED:0.50 QI:0|0|0.5|1|1|1|2|16|110; (*GB) gi|357440677|ref|XP_003590616.1| (e_value=2e-18) Senescence-associated protein SAG102 [Medicago truncatula];; (*ITAG) Solyc06g009000.1.1 (e_value=3e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:2946906-2947772 transcript_region:SL2.40ch06:2946906..2947772- functional_description:"Mediator of aba-regulated dormancy 1 (AHRD V1 *-*- D7LTE7_ARALY)"; NbS00042407g0009.1 protein AED:0.04 eAED:0.04 QI:102|0.6|0.66|1|0.6|0.5|6|56|306; (*GB) gi|225436926|ref|XP_002275123.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100261455 [Vitis vinifera];; (*TAIR) AT4G02800.1 (e_value=4e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). | chr4:1250126-1251478 FORWARD LENGTH=333;; (*ITAG) Solyc06g008980.2.1 (e_value=3e-137) genomic_reference:SL2.40ch06 gene_region:2920667-2924085 transcript_region:SL2.40ch06:2920667..2924085+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042407g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|155 NbS00007575g0012.1 protein AED:0.14 eAED:0.14 QI:30|1|0.5|1|1|1|2|0|111; (*GB) gi|356559508|ref|XP_003548041.1| (e_value=5e-32) PREDICTED: lipid transfer-like protein VAS-like [Glycine max];; (*SWP) sp|Q9FFY3|VAS_ARATH (e_value=9e-31) Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1;; (*TAIR) AT5G13900.1 (e_value=7e-32) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:4481346-4481876 REVERSE LENGTH=151;; (*ITAG) Solyc01g103060.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:83504324-83505106 transcript_region:SL2.40ch01:83504324..83505106+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RGU5_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0006869 NbS00007575g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|164; (*ITAG) Solyc01g103070.2.1 (e_value=4e-26) genomic_reference:SL2.40ch01 gene_region:83505849-83506798 transcript_region:SL2.40ch01:83505849..83506798+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007575g0014.1 protein AED:0.15 eAED:0.15 QI:223|1|0.88|1|1|1|9|0|759; (*GB) gi|255573856|ref|XP_002527847.1| (e_value=6e-151) U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis];; (*SWP) sp|Q9SY74|C3H5_ARATH (e_value=6e-144) Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2;; (*TAIR) AT1G10320.1 (e_value=4e-145) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757;; (*ITAG) Solyc01g103090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83516637-83524905 transcript_region:SL2.40ch01:83516637..83524905- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00007575g0013.1 protein AED:0.16 eAED:0.16 QI:154|0.92|0.86|1|0.92|0.86|15|0|977; (*GB) gi|225435997|ref|XP_002273102.1| (e_value=0.0) PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis vinifera];; (*SWP) sp|P42285|SK2L2_HUMAN (e_value=0.0) Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3;; (*TAIR) AT1G59760.1 (e_value=0.0) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00004669g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|204; (*GB) gi|296278604|gb|ADH04266.1| (e_value=2e-87) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=5e-24) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=4e-25) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090320.2.1 (e_value=5e-47) genomic_reference:SL2.40ch01 gene_region:75741119-75741760 transcript_region:SL2.40ch01:75741119..75741760- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007665g0007.1 protein AED:0.07 eAED:0.07 QI:394|0.90|1|1|0.81|0.75|12|379|400; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=2e-144) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=5e-136) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc06g053300.2.1 (e_value=3e-180) genomic_reference:SL2.40ch06 gene_region:32513714-32520119 transcript_region:SL2.40ch06:32513714..32520119- go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 *-** B6U4M0_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00025288g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|255561909|ref|XP_002521963.1| (e_value=1e-18) Ethylene-responsive transcription factor 1B, putative [Ricinus communis];; (*SWP) sp|Q9LSX0|ERF96_ARATH (e_value=4e-19) Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1;; (*TAIR) AT5G43410.1 (e_value=3e-20) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:17435010-17435405 REVERSE LENGTH=131;; (*ITAG) Solyc09g066340.1.1 (e_value=5e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60368801-60369196 transcript_region:SL2.40ch09:60368801..60369196+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00025288g0006.1 protein AED:0.10 eAED:0.10 QI:33|0.66|0.75|1|0.66|0.75|4|84|329; (*GB) gi|359480009|ref|XP_003632389.1| (e_value=1e-101) PREDICTED: LOW QUALITY PROTEIN: hyoscyamine 6-dioxygenase-like [Vitis vinifera];; (*SWP) sp|P24397|HY6H_HYONI (e_value=2e-79) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT5G24530.1 (e_value=4e-59) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc06g083910.2.1 (e_value=8e-99) genomic_reference:SL2.40ch06 gene_region:45501936-45503664 transcript_region:SL2.40ch06:45501936..45503664- go_terms:GO:0045431 functional_description:"Flavonol synthase (AHRD V1 **-* Q07DT9_FRAAN); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00047845g0001.1 protein AED:0.16 eAED:0.17 QI:322|0.5|0.8|1|0|0.4|5|581|117; (*GB) gi|297833906|ref|XP_002884835.1| (e_value=4e-30) PHD finger family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SRM4|ALFL2_ARATH (e_value=1e-31) PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana GN=AL2 PE=2 SV=1;; (*TAIR) AT3G11200.1 (e_value=9e-33) | Symbols: AL2 | alfin-like 2 | chr3:3508387-3510418 REVERSE LENGTH=246;; (*ITAG) Solyc09g005360.2.1 (e_value=5e-35) genomic_reference:SL2.40ch09 gene_region:277584-286002 transcript_region:SL2.40ch09:277584..286002+ go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7LYZ0_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00009055g0009.1 protein AED:0.01 eAED:0.09 QI:600|0.90|0.75|1|0.81|0.75|12|0|2253; (*GB) gi|255545606|ref|XP_002513863.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT1G22060.1 (e_value=0.0) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999;; (*ITAG) Solyc04g072630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57188492-57198522 transcript_region:SL2.40ch04:57188492..57198522+ functional_description:"Os10g0363700 protein (Fragment) (AHRD V1 *-*- Q0IY59_ORYSJ)"; NbS00009055g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|99 NbS00009055g0010.1 protein AED:0.43 eAED:0.47 QI:0|0|0.33|1|0|0.33|3|0|87; (*GB) gi|4097587|gb|AAD00119.1| (e_value=5e-38) NTGP5 [Nicotiana tabacum];; (*SWP) sp|Q6Z8K4|MUB3_ORYSJ (e_value=4e-32) Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1;; (*TAIR) AT1G22050.1 (e_value=1e-28) | Symbols: MUB6 | membrane-anchored ubiquitin-fold protein 6 precursor | chr1:7771897-7772843 FORWARD LENGTH=119;; (*ITAG) Solyc04g072640.2.1 (e_value=7e-43) genomic_reference:SL2.40ch04 gene_region:57199069-57203113 transcript_region:SL2.40ch04:57199069..57203113- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00033134g0004.1 protein AED:0.05 eAED:0.05 QI:110|1|1|1|1|1|3|278|96; (*GB) gi|350534694|ref|NP_001234666.1| (e_value=3e-49) protein RSI-1 precursor [Solanum lycopersicum];; (*SWP) sp|P47926|RSI1_SOLLC (e_value=8e-51) Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1;; (*TAIR) AT1G74670.1 (e_value=1e-27) | Symbols: | Gibberellin-regulated family protein | chr1:28053378-28053893 FORWARD LENGTH=101;; (*ITAG) Solyc11g011210.1.1 (e_value=5e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4263748-4264776 transcript_region:SL2.40ch11:4263748..4264776- go_terms:GO:0005515 functional_description:"Gibberellin regulated protein (AHRD V1 **-- A2Q374_MEDTR); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; GO:0005515 NbS00047111g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.81|1|0.8|0.90|11|327|382; (*GB) gi|297742269|emb|CBI34418.3| (e_value=1e-109) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94AX5|GDT11_ARATH (e_value=2e-95) GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2;; (*TAIR) AT1G64150.1 (e_value=2e-96) | Symbols: | Uncharacterized protein family (UPF0016) | chr1:23809047-23812579 REVERSE LENGTH=370;; (*ITAG) Solyc08g081770.2.1 (e_value=2e-171) genomic_reference:SL2.40ch08 gene_region:61901463-61907902 transcript_region:SL2.40ch08:61901463..61907902- go_terms:GO:0005515 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 *--- B9GMI0_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0005515 NbS00031473g0004.1 protein AED:0.14 eAED:0.14 QI:11|0.66|0.25|1|0.33|0.25|4|0|309; (*GB) gi|255570677|ref|XP_002526293.1| (e_value=8e-148) GABA-specific permease, putative [Ricinus communis];; (*SWP) sp|O60113|YG64_SCHPO (e_value=6e-36) Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=2 SV=1;; (*TAIR) AT2G01170.2 (e_value=1e-142) | Symbols: BAT1 | bidirectional amino acid transporter 1 | chr2:102364-104157 REVERSE LENGTH=437;; (*ITAG) Solyc05g008760.2.1 (e_value=4e-139) genomic_reference:SL2.40ch05 gene_region:2991698-2994463 transcript_region:SL2.40ch05:2991698..2994463- go_terms:GO:0016020 functional_description:"Amino acid permease (AHRD V1 ***- B6SYL4_MAIZE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00024578g0003.1 protein AED:0.55 eAED:0.63 QI:87|0|0|0.66|0.5|0.66|3|0|243; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=1e-118) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=4e-120) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=1e-79) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=6e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00041790g0007.1 protein AED:0.03 eAED:0.03 QI:164|1|1|1|0.33|0|4|230|143; (*GB) gi|359476094|ref|XP_002282215.2| (e_value=1e-44) PREDICTED: uncharacterized protein LOC100259398 [Vitis vinifera];; (*ITAG) Solyc08g067390.2.1 (e_value=3e-56) genomic_reference:SL2.40ch08 gene_region:53631177-53633631 transcript_region:SL2.40ch08:53631177..53633631+ functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 *-*- B6RN16_9ROSI); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00041790g0003.1 protein AED:0.29 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|186920382|gb|ACC95444.1| (e_value=0.0) beta-ketoacyl-CoA synthase [Helianthus annuus];; (*SWP) sp|O48780|KCS11_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=0.0) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc06g065560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37340923-37342464 transcript_region:SL2.40ch06:37340923..37342464- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00041790g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|224141853|ref|XP_002324276.1| (e_value=7e-53) beta-ketoacyl-coa synthase family protein [Populus trichocarpa];; (*SWP) sp|O48780|KCS11_ARATH (e_value=6e-50) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=5e-51) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc06g065560.1.1 (e_value=1e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37340923-37342464 transcript_region:SL2.40ch06:37340923..37342464- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00060609g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255541294|ref|XP_002511711.1| (e_value=2e-48) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62280.1 (e_value=3e-27) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc01g091250.2.1 (e_value=6e-102) genomic_reference:SL2.40ch01 gene_region:76677735-76678734 transcript_region:SL2.40ch01:76677735..76678734- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00008710g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.57|0.25|1|0.57|0.37|8|0|449; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc11g064900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47269846-47276122 transcript_region:SL2.40ch11:47269846..47276122- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00008710g0016.1 protein AED:0.28 eAED:0.28 QI:416|0.9|0.81|1|0.7|0.54|11|0|430; (*GB) gi|225426412|ref|XP_002270065.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT1G63500.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487;; (*ITAG) Solyc11g064890.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47257190-47268568 transcript_region:SL2.40ch11:47257190..47268568+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW31_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00008710g0017.1 protein AED:0.29 eAED:0.82 QI:0|0.25|0|0.8|0.25|0.6|5|0|652; (*GB) gi|225436658|ref|XP_002276327.1| (e_value=1e-164) PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Vitis vinifera];; (*SWP) sp|Q9SUD8|PP340_ARATH (e_value=2e-118) Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1;; (*TAIR) AT4G28010.1 (e_value=1e-119) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13930379-13932493 FORWARD LENGTH=704;; (*ITAG) Solyc06g007300.1.1 (e_value=3e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00008710g0007.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|75 NbS00025410g0005.1 protein AED:0.08 eAED:0.08 QI:92|0|0.5|1|1|1|2|0|371; (*GB) gi|225457781|ref|XP_002264795.1| (e_value=0.0) PREDICTED: acyl-[acyl-carrier-protein] desaturase 6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84VY3|STAD6_ARATH (e_value=0.0) Acyl-[acyl-carrier-protein] desaturase 6, chloroplastic OS=Arabidopsis thaliana GN=S-ACP-DES6 PE=2 SV=2;; (*TAIR) AT1G43800.1 (e_value=0.0) | Symbols: | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr1:16577662-16579549 FORWARD LENGTH=391;; (*ITAG) Solyc06g059720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33971878-33973270 transcript_region:SL2.40ch06:33971878..33973270- go_terms:GO:0004768 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** Q8LA10_ARATH); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768 NbS00025410g0006.1 protein AED:0.12 eAED:0.12 QI:214|0.95|0.86|1|1|1|22|0|1037; (*GB) gi|255570428|ref|XP_002526173.1| (e_value=0.0) suppressor of ty, putative [Ricinus communis];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=0.0) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=0.0) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00003193g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|753|168; (*GB) gi|76160935|gb|ABA40431.1| (e_value=2e-34) unknown [Solanum tuberosum];; (*ITAG) Solyc07g007330.1.1 (e_value=5e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00023797g0007.1 protein AED:0.23 eAED:0.25 QI:209|1|0.92|1|0.92|0.85|14|375|582; (*GB) gi|365222856|gb|AEW69780.1| (e_value=0.0) Hop-interacting protein THI002 [Solanum lycopersicum];; (*TAIR) AT5G41950.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16785825-16789360 FORWARD LENGTH=565;; (*ITAG) Solyc08g083070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62811761-62823112 transcript_region:SL2.40ch08:62811761..62823112- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- D5V340_ARCNC); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00023797g0008.1 protein AED:0.20 eAED:0.21 QI:0|0.62|0.44|0.88|0.5|0.44|9|0|686; (*GB) gi|225426607|ref|XP_002280483.1| (e_value=0.0) PREDICTED: metal-nicotianamine transporter YSL1 [Vitis vinifera];; (*SWP) sp|Q6R3L0|YSL1_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2;; (*TAIR) AT4G24120.1 (e_value=0.0) | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 | chr4:12524581-12527023 FORWARD LENGTH=673;; (*ITAG) Solyc08g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62808532-62811413 transcript_region:SL2.40ch08:62808532..62811413+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00008019g0114.1 protein AED:0.25 eAED:0.46 QI:0|1|0|1|1|0.5|2|0|87 NbS00008019g0101.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|397 NbS00008019g0103.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|460 NbS00008019g0110.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|134 NbS00008019g0111.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|59 NbS00011309g0027.1 protein AED:0.00 eAED:0.00 QI:374|1|0.77|1|0.5|0.44|9|386|225; (*GB) gi|225456327|ref|XP_002283817.1| (e_value=6e-135) PREDICTED: deoxycytidylate deaminase [Vitis vinifera];; (*SWP) sp|Q5RC69|DCTD_PONAB (e_value=1e-64) Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1;; (*TAIR) AT3G48540.1 (e_value=1e-124) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr3:17989798-17992015 REVERSE LENGTH=232;; (*ITAG) Solyc03g111350.2.1 (e_value=1e-155) genomic_reference:SL2.40ch03 gene_region:56005264-56008568 transcript_region:SL2.40ch03:56005264..56008568- go_terms:GO:0030413 functional_description:"Deoxycytidylate deaminase-like (AHRD V1 ***- Q5JN09_ORYSJ); contains Interpro domain(s) IPR015517 Cytidine deaminase "; GO:0030413 NbS00011309g0019.1 protein AED:0.14 eAED:0.14 QI:297|0.9|0.90|1|0.7|0.81|11|242|476; (*GB) gi|9588452|emb|CAC00547.1| (e_value=0.0) gamma tubulin [Nicotiana tabacum];; (*SWP) sp|P38557|TBG1_ARATH (e_value=0.0) Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1;; (*TAIR) AT3G61650.1 (e_value=0.0) | Symbols: TUBG1 | gamma-tubulin | chr3:22812601-22815011 REVERSE LENGTH=474;; (*ITAG) Solyc03g111380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56018424-56026055 transcript_region:SL2.40ch03:56018424..56026055- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- C1BSD0_9MAXI); contains Interpro domain(s) IPR002454 Gamma tubulin "; GO:0005200 NbS00011309g0026.1 protein AED:0.17 eAED:0.19 QI:0|0.75|0.88|1|0.5|0.66|9|426|262; (*GB) gi|297733623|emb|CBI14870.3| (e_value=2e-121) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G63280.1 (e_value=2e-100) | Symbols: | C2H2-like zinc finger protein | chr5:25367085-25368848 FORWARD LENGTH=271;; (*ITAG) Solyc03g111370.2.1 (e_value=3e-155) genomic_reference:SL2.40ch03 gene_region:56013519-56017588 transcript_region:SL2.40ch03:56013519..56017588- go_terms:GO:0003676 functional_description:"Zinc finger protein (AHRD V1 ***- B6STE4_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676 NbS00011309g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|521; (*GB) gi|255540385|ref|XP_002511257.1| (e_value=0.0) purine permease, putative [Ricinus communis];; (*SWP) sp|Q84MA8|AZG2_ARATH (e_value=0.0) Adenine/guanine permease AZG2 OS=Arabidopsis thaliana GN=AZG2 PE=2 SV=1;; (*TAIR) AT5G50300.1 (e_value=0.0) | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease family protein | chr5:20466492-20468084 REVERSE LENGTH=530;; (*ITAG) Solyc03g111400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56050645-56052243 transcript_region:SL2.40ch03:56050645..56052243+ go_terms:GO:0005345,GO:0015211 functional_description:"Xanthine/uracil permease family protein (AHRD V1 ***- D7L9S9_ARALY); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0005345,GO:0015211 NbS00011309g0030.1 protein AED:0.15 eAED:0.15 QI:222|1|1|1|0.92|0.86|15|408|426; (*GB) gi|225456323|ref|XP_002283797.1| (e_value=0.0) PREDICTED: ubiquitin-like modifier-activating enzyme 5 isoform 1 [Vitis vinifera];; (*SWP) sp|O23034|UBA5_ARATH (e_value=0.0) Ubiquitin-like modifier-activating enzyme 5 OS=Arabidopsis thaliana GN=At1g05350 PE=3 SV=2;; (*TAIR) AT1G05350.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:1560891-1564005 REVERSE LENGTH=431;; (*ITAG) Solyc03g111340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55998016-56004770 transcript_region:SL2.40ch03:55998016..56004770+ go_terms:GO:0005515,GO:0008641 functional_description:"Ubiquitin-like modifier-activating enzyme 5 (AHRD V1 **-* D3PG49_9MAXI); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0005515,GO:0008641 NbS00011309g0028.1 protein AED:0.19 eAED:0.20 QI:4|1|0.9|1|0.68|0.85|20|0|681; (*GB) gi|118488318|gb|ABK95978.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q921I2|KLDC4_MOUSE (e_value=3e-93) Kelch domain-containing protein 4 OS=Mus musculus GN=Klhdc4 PE=1 SV=2;; (*TAIR) AT5G50310.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:20474562-20479281 FORWARD LENGTH=666;; (*ITAG) Solyc03g111390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56029307-56039278 transcript_region:SL2.40ch03:56029307..56039278+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 4 (AHRD V1 ***- B2VXE7_PYRTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00011309g0029.1 protein AED:0.20 eAED:0.20 QI:202|0.33|0.25|0.75|0.33|0.5|4|0|398; (*GB) gi|255540379|ref|XP_002511254.1| (e_value=3e-176) coproporphyrinigen III oxidase, putative [Ricinus communis];; (*SWP) sp|P73245|Y1917_SYNY3 (e_value=1e-89) Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1917 PE=3 SV=1;; (*TAIR) AT5G63290.1 (e_value=7e-168) | Symbols: | Radical SAM superfamily protein | chr5:25369349-25370894 REVERSE LENGTH=484;; (*ITAG) Solyc03g111360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56010796-56012961 transcript_region:SL2.40ch03:56010796..56012961+ go_terms:GO:0051536,GO:0005737 functional_description:"Oxygen-independent coproporphyrinogen III oxidase-like protein sll1917 (AHRD V1 ***- B6UAC6_MAIZE); contains Interpro domain(s) IPR004559 Putative oxygen-independent coproporphyrinogen III oxidase "; GO:0051536,GO:0005737 NbS00011309g0107.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|687 NbS00011309g0102.1 protein AED:0.22 eAED:0.22 QI:165|0.83|0.71|1|0.83|0.71|7|597|222 NbS00011309g0209.1 protein AED:0.09 eAED:0.09 QI:0|0|0.33|1|0.5|0|3|0|496 NbS00011309g0208.1 protein AED:0.33 eAED:0.33 QI:0|0.83|0.71|1|0.83|0.85|7|0|467 NbS00028913g0012.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.25|1|0.66|0.5|4|0|491; (*GB) gi|81238592|gb|ABB60054.1| (e_value=1e-176) 11S globulin precursor isoform 3 [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=2e-139) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=3e-109) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc03g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00028913g0011.1 protein AED:0.19 eAED:0.19 QI:237|1|1|1|0.5|0.66|3|452|248; (*GB) gi|6552389|dbj|BAA88224.1| (e_value=3e-104) myb-related transcription factor LBM4 [Nicotiana tabacum];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=3e-69) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=1e-73) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc03g005570.2.1 (e_value=2e-113) genomic_reference:SL2.40ch03 gene_region:419020-421333 transcript_region:SL2.40ch03:419020..421333+ go_terms:GO:0005515,GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00028913g0004.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|359483606|ref|XP_002271969.2| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera];; (*TAIR) AT1G29370.1 (e_value=2e-11) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc02g071180.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00031668g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|1|0.8|5|0|302; (*GB) gi|156070802|gb|ABU45214.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-50) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G66710.1 (e_value=3e-114) | Symbols: | Protein kinase superfamily protein | chr5:26636609-26638564 FORWARD LENGTH=405;; (*ITAG) Solyc02g085620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43021184-43027761 transcript_region:SL2.40ch02:43021184..43027761- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B6T8S1_MAIZE); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004712 NbS00015308g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.84|1|0.83|0.84|13|0|487; (*GB) gi|225429021|ref|XP_002265128.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 4 [Vitis vinifera];; (*SWP) sp|Q0WPE9|NAT7_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2;; (*TAIR) AT1G60030.1 (e_value=0.0) | Symbols: ATNAT7, NAT7 | nucleobase-ascorbate transporter 7 | chr1:22113993-22116648 REVERSE LENGTH=538;; (*ITAG) Solyc01g106920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86388409-86392269 transcript_region:SL2.40ch01:86388409..86392269- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00015308g0009.1 protein AED:0.07 eAED:0.18 QI:92|0|0|1|0|0|3|0|177; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-34) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00061829g0002.1 protein AED:0.14 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|147772174|emb|CAN64546.1| (e_value=1e-118) hypothetical protein VITISV_006074 [Vitis vinifera];; (*SWP) sp|Q943I6|STOP1_ORYSJ (e_value=3e-72) Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1;; (*TAIR) AT5G22890.1 (e_value=2e-96) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:7653541-7654662 REVERSE LENGTH=373;; (*ITAG) Solyc11g066420.1.1 (e_value=4e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49281582-49282736 transcript_region:SL2.40ch11:49281582..49282736+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M1K6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00003376g0008.1 protein AED:0.23 eAED:0.24 QI:2|1|0.5|1|0.66|0.5|4|0|266; (*GB) gi|255587105|ref|XP_002534138.1| (e_value=2e-160) Protein YIF1A, putative [Ricinus communis];; (*SWP) sp|Q4FZQ0|YF1BB_XENLA (e_value=2e-32) Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1;; (*TAIR) AT1G30890.2 (e_value=1e-157) | Symbols: | Integral membrane HRF1 family protein | chr1:10994890-10995999 FORWARD LENGTH=269;; (*ITAG) Solyc06g083630.2.1 (e_value=2e-174) genomic_reference:SL2.40ch06 gene_region:45263577-45269128 transcript_region:SL2.40ch06:45263577..45269128- go_terms:GO:0005515 functional_description:"Transport protein YIF1 (AHRD V1 **-- C0SA11_PARBP); contains Interpro domain(s) IPR005578 Hrf1 "; GO:0005515 NbS00000750g0004.1 protein AED:0.34 eAED:0.35 QI:0|0.33|0.5|1|0.66|0.75|4|0|244; (*GB) gi|3912949|sp|O49996.1|1433D_TOBAC (e_value=3e-151) RecName: Full=14-3-3-like protein D;; (*SWP) sp|O49996|1433D_TOBAC (e_value=1e-152) 14-3-3-like protein D OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G65430.1 (e_value=2e-128) | Symbols: GRF8, 14-3-3KAPPA, GF14 KAPPA | general regulatory factor 8 | chr5:26148546-26150255 REVERSE LENGTH=248;; (*ITAG) Solyc11g010470.1.1 (e_value=4e-150) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3533525-3537417 transcript_region:SL2.40ch11:3533525..3537417- go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha (AHRD V1 **-- 1433B_XENTR); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00018039g0005.1 protein AED:0.17 eAED:0.17 QI:265|1|1|1|0.85|0.86|15|476|975; (*GB) gi|255570320|ref|XP_002526120.1| (e_value=0.0) alpha-amylase, putative [Ricinus communis];; (*SWP) sp|A2YGY2|AMY2A_ORYSI (e_value=4e-129) Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1;; (*TAIR) AT1G69830.1 (e_value=1e-171) | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr1:26288518-26293003 REVERSE LENGTH=887;; (*ITAG) Solyc02g066950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31778592-31790811 transcript_region:SL2.40ch02:31778592..31790811+ go_terms:GO:0016020,GO:0005975 functional_description:"Alpha amylase 2 (IC) (AHRD V1 *-*- Q010P9_OSTTA); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0016020,GO:0005975 NbS00060224g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|1|0.77|0.7|10|0|480; (*GB) gi|325977008|gb|ADZ48238.1| (e_value=0.0) lycopene epsilon cyclase [Nicotiana tabacum];; (*SWP) sp|O65837|LCYE_SOLLC (e_value=0.0) Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1;; (*TAIR) AT5G57030.1 (e_value=0.0) | Symbols: LUT2 | Lycopene beta/epsilon cyclase protein | chr5:23077398-23079818 FORWARD LENGTH=524;; (*ITAG) Solyc12g008980.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2285372-2290327 transcript_region:SL2.40ch12:2285372..2290327+ go_terms:GO:0045436,GO:0045435 functional_description:"Lycopene epsilon cyclase"; GO:0045436,GO:0045435 NbS00030535g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|180; (*GB) gi|155573899|gb|ABU24346.1| (e_value=5e-102) mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa];; (*SWP) sp|Q40578|AOX2_TOBAC (e_value=6e-102) Alternative oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2;; (*TAIR) AT3G22370.1 (e_value=2e-101) | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354;; (*ITAG) Solyc08g005550.2.1 (e_value=6e-101) genomic_reference:SL2.40ch08 gene_region:408345-410739 transcript_region:SL2.40ch08:408345..410739+ go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** C1I1U5_NICGU); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00030535g0005.1 protein AED:0.31 eAED:0.60 QI:0|0|0|1|0|0|3|0|127 NbS00051597g0003.1 protein AED:0.17 eAED:0.17 QI:101|0.75|0.6|1|1|1|5|0|336; (*GB) gi|359492029|ref|XP_003634352.1| (e_value=2e-134) PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3ECD0|PUS2_ARATH (e_value=2e-134) RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g76050 PE=2 SV=1;; (*TAIR) AT1G76050.2 (e_value=1e-135) | Symbols: | Pseudouridine synthase family protein | chr1:28540858-28542826 FORWARD LENGTH=430;; (*ITAG) Solyc04g081920.2.1 (e_value=3e-178) genomic_reference:SL2.40ch04 gene_region:63370583-63373715 transcript_region:SL2.40ch04:63370583..63373715+ go_terms:GO:0005515,GO:0009982 functional_description:"Pseudouridine synthase (AHRD V1 **** Q2S3B7_SALRD); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0005515,GO:0009982 NbS00051597g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.75|1|0.71|0.75|8|289|513; (*GB) gi|255539058|ref|XP_002510594.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=0.0) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.2 (e_value=0.0) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28537743-28540448 FORWARD LENGTH=561;; (*ITAG) Solyc04g081910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63365446-63370378 transcript_region:SL2.40ch04:63365446..63370378+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00029791g0013.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|412; (*GB) gi|109727320|gb|ABG45945.1| (e_value=0.0) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-95) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00029791g0016.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0.5|2|0|211 NbS00029791g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.85|0.37|0.87|0.85|0.87|8|0|632; (*GB) gi|297736010|emb|CBI24048.3| (e_value=3e-170) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y5A9|YTHD2_HUMAN (e_value=1e-57) YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2;; (*TAIR) AT3G13060.2 (e_value=1e-137) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634;; (*ITAG) Solyc05g032850.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:45405216-45415463 transcript_region:SL2.40ch05:45405216..45415463+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *-*- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00029791g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.44|0.3|0.8|0.55|0.5|10|0|373; (*GB) gi|296082554|emb|CBI21559.3| (e_value=1e-96) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G07360.1 (e_value=2e-91) | Symbols: | SH3 domain-containing protein | chr2:3047623-3057099 REVERSE LENGTH=1196;; (*ITAG) Solyc05g025750.2.1 (e_value=1e-74) genomic_reference:SL2.40ch05 gene_region:36270211-36274517 transcript_region:SL2.40ch05:36270211..36274517- functional_description:"SH3 domain-containing protein (AHRD V1 ***- D7LA99_ARALY)"; NbS00037935g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.8|1|0|0|5|159|335; (*GB) gi|297791107|ref|XP_002863438.1| (e_value=5e-103) GDSL-motif lipase/hydrolase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FJ40|GDL86_ARATH (e_value=5e-104) GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1;; (*TAIR) AT5G45960.1 (e_value=4e-105) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18637174-18640319 REVERSE LENGTH=375;; (*ITAG) Solyc10g008830.2.1 (e_value=2e-156) genomic_reference:SL2.40ch10 gene_region:2891629-2896154 transcript_region:SL2.40ch10:2891629..2896154- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45960 (AHRD V1 ***- GDL86_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00009032g0001.1 protein AED:0.01 eAED:0.01 QI:2453|0|0.5|1|0|1|2|363|79 NbS00009032g0009.1 protein AED:0.02 eAED:0.02 QI:107|1|1|1|0.5|0.85|7|918|255; (*GB) gi|357472161|ref|XP_003606365.1| (e_value=3e-147) Exosome complex exonuclease MTR3 [Medicago truncatula];; (*SWP) sp|Q6P0I8|EXOS6_DANRE (e_value=1e-40) Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2;; (*TAIR) AT4G27490.1 (e_value=1e-132) | Symbols: | 3'-5'-exoribonuclease family protein | chr4:13739961-13741647 FORWARD LENGTH=256;; (*ITAG) Solyc06g005860.1.1 (e_value=5e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:874388-875155 transcript_region:SL2.40ch06:874388..875155- go_terms:GO:0005515,GO:0000175 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 **-- PNP_CYTH3); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515,GO:0000175 NbS00009032g0002.1 protein AED:0.07 eAED:0.07 QI:585|0.84|0.92|1|0.92|0.85|14|333|359; (*GB) gi|20197601|gb|AAM15148.1| (e_value=0.0) unknown protein [Arabidopsis thaliana];; (*TAIR) AT2G28310.3 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374;; (*ITAG) Solyc11g069550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51250786-51256286 transcript_region:SL2.40ch11:51250786..51256286- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00007606g0005.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.8|1|0.75|1|5|299|183; (*GB) gi|297738007|emb|CBI27208.3| (e_value=7e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64764|TRXO1_ARATH (e_value=9e-37) Thioredoxin O1, mitochondrial OS=Arabidopsis thaliana GN=At2g35010 PE=2 SV=1;; (*TAIR) AT2G35010.2 (e_value=7e-38) | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:14754398-14755888 FORWARD LENGTH=194;; (*ITAG) Solyc02g068500.2.1 (e_value=3e-91) genomic_reference:SL2.40ch02 gene_region:33023030-33030517 transcript_region:SL2.40ch02:33023030..33030517+ go_terms:GO:0045454 functional_description:"Thioredoxin o (AHRD V1 *-*- B9MUN0_POPTR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00043688g0003.1 protein AED:0.07 eAED:0.07 QI:225|1|1|1|0.75|0.8|5|243|315; (*GB) gi|225469876|ref|XP_002270145.1| (e_value=4e-140) PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera];; (*TAIR) AT2G02370.2 (e_value=2e-129) | Symbols: | SNARE associated Golgi protein family | chr2:621841-623084 FORWARD LENGTH=320;; (*ITAG) Solyc01g102530.2.1 (e_value=2e-134) genomic_reference:SL2.40ch01 gene_region:83075127-83077462 transcript_region:SL2.40ch01:83075127..83077462- functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B7KHF6_CYAP7); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00019104g0001.1 protein AED:0.40 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|115 NbS00057748g0005.1 protein AED:0.21 eAED:0.23 QI:203|0.5|0.66|1|0.5|0.66|3|0|535; (*GB) gi|225425082|ref|XP_002273118.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At3g19850 [Vitis vinifera];; (*SWP) sp|Q9LT24|Y3985_ARATH (e_value=4e-157) BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana GN=At3g19850 PE=2 SV=1;; (*TAIR) AT3G19850.1 (e_value=3e-158) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:6898383-6901157 REVERSE LENGTH=554;; (*ITAG) Solyc11g040040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28367024-28370692 transcript_region:SL2.40ch11:28367024..28370692- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00060285g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|1|1|6|0|465; (*GB) gi|356569533|ref|XP_003552954.1| (e_value=0.0) PREDICTED: O-glucosyltransferase rumi-like [Glycine max];; (*SWP) sp|B0X1Q4|RUMI_CULQU (e_value=6e-19) O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1;; (*TAIR) AT1G07220.1 (e_value=0.0) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr1:2217073-2219379 REVERSE LENGTH=507;; (*ITAG) Solyc06g076980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44228341-44230786 transcript_region:SL2.40ch06:44228341..44230786+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8RT95_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00050984g0008.1 protein AED:0.37 eAED:0.37 QI:0|0.33|0.5|1|0.33|0.25|4|462|141; (*GB) gi|224066553|ref|XP_002302133.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*TAIR) AT4G39235.1 (e_value=4e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18268514-18269034 FORWARD LENGTH=86;; (*ITAG) Solyc01g109680.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:88334992-88335716 transcript_region:SL2.40ch01:88334992..88335716- functional_description:"Unknown Protein (AHRD V1)"; NbS00049369g0003.1 protein AED:0.11 eAED:0.11 QI:147|1|1|1|1|1|5|277|220; (*GB) gi|224127352|ref|XP_002329256.1| (e_value=2e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=1e-102) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=9e-93) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc07g065170.2.1 (e_value=5e-104) genomic_reference:SL2.40ch07 gene_region:64272755-64275084 transcript_region:SL2.40ch07:64272755..64275084- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- B4FGG1_MAIZE); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00059338g0001.1 protein AED:0.45 eAED:0.48 QI:0|0.33|0|0.75|0|0|4|0|136; (*ITAG) Solyc00g019970.2.1 (e_value=3e-29) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022536g0009.1 protein AED:0.28 eAED:0.30 QI:0|0.83|0.57|1|0.66|0.57|7|1610|232; (*GB) gi|356523801|ref|XP_003530523.1| (e_value=1e-75) PREDICTED: vacuolar protein sorting-associated protein 32 homolog 1-like [Glycine max];; (*SWP) sp|Q9SZE4|VP322_ARATH (e_value=6e-70) Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1;; (*TAIR) AT4G29160.2 (e_value=1e-71) | Symbols: SNF7.1 | SNF7 family protein | chr4:14381350-14382342 FORWARD LENGTH=192;; (*ITAG) Solyc05g026050.2.1 (e_value=4e-77) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00022536g0008.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|228; (*GB) gi|125571605|gb|EAZ13120.1| (e_value=6e-26) hypothetical protein OsJ_03040 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SJL7|RAX2_ARATH (e_value=7e-22) Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1;; (*TAIR) AT4G37780.1 (e_value=4e-23) | Symbols: MYB87, ATMYB87 | myb domain protein 87 | chr4:17758404-17759526 REVERSE LENGTH=305;; (*ITAG) Solyc08g065910.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51457430-51458883 transcript_region:SL2.40ch08:51457430..51458883- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B7UCQ7_PANGI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002035g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.83|1|0.6|0.5|6|252|422; (*GB) gi|225433839|ref|XP_002263125.1| (e_value=0.0) PREDICTED: biotin synthase [Vitis vinifera];; (*SWP) sp|P54967|BIOB_ARATH (e_value=0.0) Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1;; (*TAIR) AT2G43360.1 (e_value=0.0) | Symbols: BIO2, BIOB | Radical SAM superfamily protein | chr2:18010918-18013129 REVERSE LENGTH=378;; (*ITAG) Solyc06g073470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41670079-41675597 transcript_region:SL2.40ch06:41670079..41675597- go_terms:GO:0008270,GO:0004076 functional_description:"Biotin synthase (AHRD V1 **** Q09JZ3_BRARP); contains Interpro domain(s) IPR002684 Biotin synthase "; GO:0008270,GO:0004076 NbS00034162g0013.1 protein AED:0.36 eAED:0.36 QI:0|1|0.87|1|0.57|0.5|8|0|371; (*GB) gi|225457415|ref|XP_002284912.1| (e_value=2e-92) PREDICTED: uncharacterized protein LOC100250124 [Vitis vinifera];; (*TAIR) AT3G47550.6 (e_value=3e-78) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17525278 FORWARD LENGTH=288;; (*ITAG) Solyc03g116030.2.1 (e_value=3e-133) genomic_reference:SL2.40ch03 gene_region:59609195-59614443 transcript_region:SL2.40ch03:59609195..59614443+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00034162g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0|0|4|279|145; (*GB) gi|388508792|gb|AFK42462.1| (e_value=1e-53) unknown [Lotus japonicus];; (*SWP) sp|Q6NMQ7|GASA6_ARATH (e_value=5e-45) Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1;; (*TAIR) AT1G74670.1 (e_value=4e-46) | Symbols: | Gibberellin-regulated family protein | chr1:28053378-28053893 FORWARD LENGTH=101;; (*ITAG) Solyc03g116060.2.1 (e_value=2e-71) genomic_reference:SL2.40ch03 gene_region:59623782-59625317 transcript_region:SL2.40ch03:59623782..59625317- functional_description:"Gibberellin-regulated protein (AHRD V1 **-- B4UW77_ARAHY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00055775g0007.1 protein AED:0.02 eAED:0.02 QI:228|1|1|1|1|1|2|405|713; (*GB) gi|225424079|ref|XP_002282768.1| (e_value=0.0) PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Vitis vinifera];; (*SWP) sp|Q9C9N5|Y1668_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1;; (*TAIR) AT2G01210.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:119509-121734 REVERSE LENGTH=716;; (*ITAG) Solyc05g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3085287-3087889 transcript_region:SL2.40ch05:3085287..3087889- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00055775g0010.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|0|0|3|4|145; (*GB) gi|365818559|gb|AEX00368.1| (e_value=7e-74) IAA32 [Solanum lycopersicum];; (*SWP) sp|Q8RYC6|IAA32_ARATH (e_value=2e-35) Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2;; (*TAIR) AT2G01200.2 (e_value=2e-36) | Symbols: IAA32 | indole-3-acetic acid inducible 32 | chr2:118385-119219 FORWARD LENGTH=191;; (*ITAG) Solyc05g008850.2.1 (e_value=1e-76) genomic_reference:SL2.40ch05 gene_region:3078181-3080323 transcript_region:SL2.40ch05:3078181..3080323+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00055775g0002.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|137; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00015810g0005.1 protein AED:0.37 eAED:0.37 QI:136|1|0.83|1|1|1|6|0|432; (*GB) gi|225423879|ref|XP_002281522.1| (e_value=0.0) PREDICTED: NAC domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=9e-180) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT1G25580.1 (e_value=0.0) | Symbols: SOG1, ANAC008 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:8997064-8999600 REVERSE LENGTH=449;; (*ITAG) Solyc05g009840.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4058802-4063872 transcript_region:SL2.40ch05:4058802..4063872- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00004319g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|0.75|0|0|4|0|323; (*GB) gi|359479995|ref|XP_002271665.2| (e_value=6e-93) PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Vitis vinifera];; (*SWP) sp|P83948|PME3_CITSI (e_value=7e-46) Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1;; (*TAIR) AT4G02320.1 (e_value=1e-46) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518;; (*ITAG) Solyc06g009190.2.1 (e_value=1e-148) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00011691g0021.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|1|1|4|393|850; (*GB) gi|350535767|ref|NP_001234212.1| (e_value=0.0) ethylene receptor homolog precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZTP3|EIN4_ARATH (e_value=0.0) Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1;; (*TAIR) AT3G04580.2 (e_value=0.0) | Symbols: EIN4 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:1235576-1237965 REVERSE LENGTH=766;; (*ITAG) Solyc11g006180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:924556-929718 transcript_region:SL2.40ch11:924556..929718- go_terms:GO:0016020,GO:0005789,GO:0005524,GO:0006355,GO:0007165,GO:0018106 functional_description:"Ethylene receptor (AHRD V1 ***- C0ILN8_COFCA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0016020,GO:0005789,GO:0005524,GO:0006355,GO:0007165,GO:0018106 NbS00011691g0017.1 protein AED:0.08 eAED:0.08 QI:80|1|1|1|1|1|7|822|330; (*GB) gi|324388026|gb|ADY38788.1| (e_value=1e-157) methyltransferase [Coffea arabica];; (*SWP) sp|Q8TCB7|METL6_HUMAN (e_value=4e-44) Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2;; (*TAIR) AT1G54650.1 (e_value=1e-131) | Symbols: | Methyltransferase family protein | chr1:20405813-20407686 REVERSE LENGTH=299;; (*ITAG) Solyc11g006130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:892429-897356 transcript_region:SL2.40ch11:892429..897356- go_terms:GO:0008152,GO:0008168 functional_description:"Methyltransferase-like protein 6 (AHRD V1 ***- B5X6R8_SALSA); contains Interpro domain(s) IPR017280 Methyltransferase, METTL2, predicted "; GO:0008152,GO:0008168 NbS00011691g0023.1 protein AED:0.28 eAED:0.43 QI:0|0|0|0.5|0.4|0.5|6|0|326; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-30) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc10g047840.1.1 (e_value=2e-50) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011691g0019.1 protein AED:0.65 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|66 NbS00011691g0024.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.25|0.2|5|0|450; (*GB) gi|209954721|dbj|BAG80551.1| (e_value=2e-136) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=8e-113) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=6e-114) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc11g006100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:887242-888751 transcript_region:SL2.40ch11:887242..888751+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- A9X3L6_9ASTR); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001161g0012.1 protein AED:0.26 eAED:0.26 QI:194|0.5|0.4|1|0.25|0.4|5|198|353; (*GB) gi|345104311|gb|AEN70977.1| (e_value=9e-152) pectate lyase [Gossypium hirsutum subsp. latifolium];; (*SWP) sp|Q9FXD8|PLY5_ARATH (e_value=1e-152) Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2;; (*TAIR) AT1G67750.1 (e_value=1e-153) | Symbols: | Pectate lyase family protein | chr1:25401660-25403165 FORWARD LENGTH=408;; (*ITAG) Solyc05g014000.2.1 (e_value=3e-169) genomic_reference:SL2.40ch05 gene_region:7501147-7503953 transcript_region:SL2.40ch05:7501147..7503953- go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** D3IZZ1_GOSHE); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00001161g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.77|0.8|0.9|1|1|10|580|553; (*GB) gi|255547962|ref|XP_002515038.1| (e_value=0.0) chaperonin containing t-complex protein 1, epsilon subunit, tcpe, putative [Ricinus communis];; (*SWP) sp|O04450|TCPE_ARATH (e_value=0.0) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8688101 REVERSE LENGTH=535;; (*ITAG) Solyc05g013990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00001161g0108.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|108 NbS00001161g0103.1 protein AED:0.03 eAED:0.04 QI:203|0.5|0.66|1|0|0|3|2345|542 NbS00001161g0206.1 protein AED:0.05 eAED:0.05 QI:548|0.85|0.87|1|0.85|0.87|8|280|819 NbS00001161g0306.1 protein AED:0.08 eAED:0.08 QI:845|0.85|1|1|0.85|0.75|8|651|244 NbS00026410g0007.1 protein AED:0.24 eAED:0.24 QI:439|0.84|0.78|1|0.69|0.64|14|0|448; (*GB) gi|225470587|ref|XP_002273994.1| (e_value=0.0) PREDICTED: alanine aminotransferase 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9S7E9|GGT2_ARATH (e_value=0.0) Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1;; (*TAIR) AT1G70580.4 (e_value=0.0) | Symbols: AOAT2, GGT2 | alanine-2-oxoglutarate aminotransferase 2 | chr1:26613222-26615845 FORWARD LENGTH=481;; (*ITAG) Solyc05g013380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6451782-6457884 transcript_region:SL2.40ch05:6451782..6457884+ go_terms:GO:0004021 functional_description:"Alanine aminotransferase 2 (AHRD V1 **** A8IKE5_SOYBN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004021 NbS00026410g0005.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|1|1|2|0|104 NbS00050468g0004.1 protein AED:0.39 eAED:0.39 QI:117|0.66|0.5|0.75|0.66|0.75|4|0|134; (*GB) gi|302121708|gb|ADK92874.1| (e_value=4e-73) RimL/acetyltransferase-domain protein [Hypericum perforatum];; (*SWP) sp|A7SLC8|NAT9_NEMVE (e_value=8e-43) N-acetyltransferase 9-like protein OS=Nematostella vectensis GN=nat9 PE=3 SV=1;; (*TAIR) AT2G04845.2 (e_value=2e-67) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:1702451-1703993 REVERSE LENGTH=191;; (*ITAG) Solyc05g041830.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:52917391-52923023 transcript_region:SL2.40ch05:52917391..52923023+ functional_description:"N-acetyltransferase (AHRD V1 ***- B6TRH8_MAIZE)"; NbS00050468g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|147859553|emb|CAN79250.1| (e_value=3e-48) hypothetical protein VITISV_015515 [Vitis vinifera];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=4e-19) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=5e-33) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc05g041870.1.1 (e_value=8e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:52937644-52938210 transcript_region:SL2.40ch05:52937644..52938210- functional_description:"Auxin-induced protein-like (AHRD V1 **-- Q6YUI4_ORYSJ); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; NbS00013663g0012.1 protein AED:0.38 eAED:0.38 QI:504|1|1|1|0|1|2|51|115; (*GB) gi|255541064|ref|XP_002511596.1| (e_value=5e-40) Nonspecific lipid-transfer protein A, putative [Ricinus communis];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=4e-31) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=3e-27) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=6e-49) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00013663g0013.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0|0.2|5|0|335; (*GB) gi|359488913|ref|XP_002283359.2| (e_value=2e-35) PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=4e-29) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=5e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00027892g0011.1 protein AED:0.21 eAED:0.21 QI:822|0.75|0.2|1|0.75|0.8|5|0|375; (*GB) gi|359491840|ref|XP_002271454.2| (e_value=2e-176) PREDICTED: serine/threonine-protein kinase PBS1-like [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=8e-152) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G20650.1 (e_value=2e-166) | Symbols: | Protein kinase superfamily protein | chr1:7158422-7160022 REVERSE LENGTH=381;; (*ITAG) Solyc04g082510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63756768-63760104 transcript_region:SL2.40ch04:63756768..63760104- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00027892g0012.1 protein AED:0.35 eAED:0.35 QI:223|0.8|0.83|1|0.8|0.66|6|0|414; (*GB) gi|225457554|ref|XP_002272490.1| (e_value=4e-174) PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P43293|NAK_ARATH (e_value=2e-128) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2;; (*TAIR) AT1G76360.1 (e_value=9e-160) | Symbols: | Protein kinase superfamily protein | chr1:28643242-28646483 REVERSE LENGTH=484;; (*ITAG) Solyc04g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63746025-63750192 transcript_region:SL2.40ch04:63746025..63750192- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00004377g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.8|1|0.5|0.6|5|513|257; (*GB) gi|225449410|ref|XP_002277835.1| (e_value=3e-126) PREDICTED: tropinone reductase homolog At1g07440 [Vitis vinifera];; (*SWP) sp|Q9ASX2|TRNH1_ARATH (e_value=9e-103) Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1;; (*TAIR) AT5G06060.1 (e_value=2e-128) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc03g096640.2.1 (e_value=6e-168) genomic_reference:SL2.40ch03 gene_region:52336333-52339563 transcript_region:SL2.40ch03:52336333..52339563- go_terms:GO:0010301 functional_description:"Dehydrogenase/reductase SDR family member 4 (AHRD V1 **-* DHRS4_RABIT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00007512g0018.1 protein AED:0.10 eAED:0.10 QI:226|1|0.83|1|0.6|0.66|6|2622|126; (*GB) gi|225441167|ref|XP_002268582.1| (e_value=2e-64) PREDICTED: uncharacterized protein LOC100258894 [Vitis vinifera];; (*TAIR) AT2G36835.1 (e_value=1e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15449839-15451307 REVERSE LENGTH=124;; (*ITAG) Solyc10g083910.1.1 (e_value=1e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62945009-62947449 transcript_region:SL2.40ch10:62945009..62947449- functional_description:"Unknown Protein (AHRD V1)"; NbS00007512g0019.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0.25|1|0|0.5|4|0|514; (*GB) gi|255556860|ref|XP_002519463.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|O04375|2A5A_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1;; (*TAIR) AT5G03470.1 (e_value=0.0) | Symbols: ATB' ALPHA | Protein phosphatase 2A regulatory B subunit family protein | chr5:866795-868872 FORWARD LENGTH=495;; (*ITAG) Solyc10g083920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00007512g0015.1 protein AED:0.44 eAED:0.54 QI:0|0.66|0.75|1|0.66|0.75|4|245|78; (*ITAG) Solyc10g083930.1.1 (e_value=9e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62957621-62961163 transcript_region:SL2.40ch10:62957621..62961163- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D6PDH0_9BACT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00007512g0016.1 protein AED:0.09 eAED:0.23 QI:0|0|0|1|0|0|3|0|145; (*GB) gi|57014025|ref|YP_173496.1| (e_value=3e-52) hypothetical protein NitaMp159 [Nicotiana tabacum]; NbS00024957g0004.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|1|1|2|0|189; (*GB) gi|224152957|ref|XP_002337295.1| (e_value=7e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02700.1 (e_value=1e-46) | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252;; (*ITAG) Solyc02g081580.2.1 (e_value=2e-55) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00047884g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|475; (*GB) gi|19743740|gb|AAL92461.1| (e_value=0.0) putative glucosyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=2e-168) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34131.1 (e_value=1e-54) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc10g079350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60225048-60226499 transcript_region:SL2.40ch10:60225048..60226499- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00010478g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|154; (*ITAG) Solyc09g059490.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010478g0008.1 protein AED:0.24 eAED:0.24 QI:99|0.87|0.88|0.94|0.81|0.88|17|362|861; (*GB) gi|255573806|ref|XP_002527822.1| (e_value=0.0) Squamous cell carcinoma antigen recognized by T-cells, putative [Ricinus communis];; (*SWP) sp|Q15020|SART3_HUMAN (e_value=3e-88) Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo sapiens GN=SART3 PE=1 SV=1;; (*TAIR) AT4G24270.2 (e_value=0.0) | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:12581765-12587293 REVERSE LENGTH=817;; (*ITAG) Solyc01g102970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83373391-83386730 transcript_region:SL2.40ch01:83373391..83386730+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* Q5CPB6_CRYHO); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00005150g0005.1 protein AED:0.01 eAED:0.01 QI:100|1|0.66|1|1|1|3|0|326; (*GB) gi|224108768|ref|XP_002314962.1| (e_value=5e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGZ4|WRK48_ARATH (e_value=3e-44) Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1;; (*TAIR) AT5G49520.1 (e_value=2e-45) | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein 48 | chr5:20090890-20092867 FORWARD LENGTH=399;; (*ITAG) Solyc05g053380.2.1 (e_value=1e-55) genomic_reference:SL2.40ch05 gene_region:62631053-62633674 transcript_region:SL2.40ch05:62631053..62633674- go_terms:GO:0045449 functional_description:"WRKY transcription factor 31 (AHRD V1 *-*- C9DI20_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00005150g0006.1 protein AED:0.10 eAED:0.31 QI:40|0|0|1|0|0|2|0|169; (*GB) gi|224365671|ref|YP_002608398.1| (e_value=7e-76) NADH dehydrogenase subunit 6 [Vitis vinifera];; (*SWP) sp|P60498|NU6M_BRACM (e_value=2e-72) NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris GN=ND6 PE=2 SV=1;; (*ITAG) ATMG00270.1 (e_value=2e-73) | Symbols: NAD6 | NADH dehydrogenase 6 | chrM:76642-77259 REVERSE LENGTH=205;; (*ITAG) Solyc00g021630.1.1 (e_value=8e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11968648-11969301 transcript_region:SL2.40ch00:11968648..11969301- go_terms:GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase chain 6 (Fragment) (AHRD V1 ***- Q2PZB4_BRAOB); contains Interpro domain(s) IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 "; GO:0055114 NbS00005150g0101.1 protein AED:0.22 eAED:1.00 QI:73|0|0|1|0|0|2|0|56 NbS00005150g0201.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|180 NbS00005150g0202.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|209 NbS00005150g0206.1 protein AED:0.49 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|61 NbS00005150g0205.1 protein AED:0.49 eAED:0.82 QI:0|0|0|1|0|0|2|0|66 NbS00005150g0306.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|0|0|3|184|155 NbS00005150g0308.1 protein AED:0.42 eAED:0.42 QI:230|0.6|0.33|0.83|0.8|1|6|0|192 NbS00009128g0016.1 protein AED:0.10 eAED:0.10 QI:15|0|0.5|1|0|0|2|417|629; (*GB) gi|225426090|ref|XP_002276602.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255255 [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=4e-61) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT1G64140.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646;; (*ITAG) Solyc08g008180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2645181-2647172 transcript_region:SL2.40ch08:2645181..2647172- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00009128g0019.1 protein AED:0.12 eAED:0.12 QI:126|0.93|0.75|1|0.73|0.68|16|0|910; (*GB) gi|359474301|ref|XP_002272827.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243215 [Vitis vinifera];; (*SWP) sp|O94451|PLI1_SCHPO (e_value=3e-17) E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3;; (*TAIR) AT5G41580.1 (e_value=9e-123) | Symbols: | RING/U-box superfamily protein | chr5:16626563-16630659 REVERSE LENGTH=760;; (*ITAG) Solyc08g008130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2595505-2610970 transcript_region:SL2.40ch08:2595505..2610970- go_terms:GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- B0W3U7_CULQU); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0008270 NbS00009128g0017.1 protein AED:0.23 eAED:0.23 QI:0|0.71|0.62|1|0.57|0.75|8|345|515; (*GB) gi|198250370|gb|ACH85192.1| (e_value=0.0) calcium-dependent protein kinase CDPK5 [Nicotiana tabacum];; (*SWP) sp|Q42479|CDPK3_ARATH (e_value=0.0) Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1;; (*TAIR) AT4G23650.1 (e_value=0.0) | Symbols: CDPK6, CPK3 | calcium-dependent protein kinase 6 | chr4:12324967-12327415 REVERSE LENGTH=529;; (*ITAG) Solyc08g008170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2637882-2642478 transcript_region:SL2.40ch08:2637882..2642478- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 3 (AHRD V1 **** B9GKB5_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00009128g0001.1 protein AED:0.13 eAED:0.13 QI:98|1|1|1|0.9|0.81|11|344|520; (*GB) gi|47933777|gb|AAT39459.1| (e_value=0.0) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|P29828|PDI_MEDSA (e_value=0.0) Protein disulfide-isomerase OS=Medicago sativa GN=PDI PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=6e-176) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g018700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22827490-22832816 transcript_region:SL2.40ch05:22827490..22832816- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756,GO:0005515 NbS00009128g0018.1 protein AED:0.38 eAED:0.66 QI:0|0|0|1|0|0|2|0|64 NbS00042447g0003.1 protein AED:0.14 eAED:0.16 QI:143|1|0.87|1|1|1|8|0|346; (*GB) gi|225423479|ref|XP_002267076.1| (e_value=0.0) PREDICTED: erlin-2-B [Vitis vinifera];; (*SWP) sp|Q6DKC0|ERL2B_XENLA (e_value=8e-123) Erlin-2-B OS=Xenopus laevis GN=erlin2-b PE=2 SV=1;; (*TAIR) AT2G03510.1 (e_value=0.0) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr2:1066717-1068934 FORWARD LENGTH=356;; (*ITAG) Solyc05g012340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5601824-5605948 transcript_region:SL2.40ch05:5601824..5605948- go_terms:GO:0005515 functional_description:"Erlin-2 (AHRD V1 ***- D3PHE1_9MAXI); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00060696g0002.1 protein AED:0.39 eAED:0.39 QI:35|1|0.5|1|1|1|2|0|63 NbS00018714g0003.1 protein AED:0.07 eAED:0.07 QI:24|1|0|1|1|1|2|0|295; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=2e-79) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=2e-74) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=1e-75) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc04g078430.1.1 (e_value=2e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60771681-60773069 transcript_region:SL2.40ch04:60771681..60773069+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- C3QXY1_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00043464g0001.1 protein AED:0.36 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|113; (*ITAG) Solyc01g056950.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00043464g0005.1 protein AED:0.28 eAED:0.29 QI:0|0.37|0.22|0.88|0.75|0.66|9|0|588; (*GB) gi|255561266|ref|XP_002521644.1| (e_value=1e-172) hypothetical protein RCOM_1110800 [Ricinus communis];; (*SWP) sp|Q9ZVC9|FRS3_ARATH (e_value=2e-96) Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2;; (*TAIR) AT2G27110.3 (e_value=6e-99) | Symbols: FRS3 | FAR1-related sequence 3 | chr2:11576969-11580259 REVERSE LENGTH=706;; (*ITAG) Solyc06g073670.2.1 (e_value=1e-131) genomic_reference:SL2.40ch06 gene_region:41841835-41847947 transcript_region:SL2.40ch06:41841835..41847947+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 3 (AHRD V1 ***- FRS3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbC25130590g0001.1 protein AED:0.37 eAED:0.39 QI:30|0|0|1|0|0|2|0|67; (*ITAG) Solyc11g066010.1.1 (e_value=7e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:48730159-48733045 transcript_region:SL2.40ch11:48730159..48733045+ functional_description:"CM0545.320.nc protein (AHRD V1 ***- B0BLB0_LOTJA)"; NbS00017829g0017.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|61; (*ITAG) Solyc06g073050.2.1 (e_value=5e-13) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00017829g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|16904543|emb|CAD10740.1| (e_value=2e-42) lipoxygenase [Corylus avellana];; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=1e-42) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=8e-39) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099200.2.1 (e_value=5e-46) genomic_reference:SL2.40ch01 gene_region:81264237-81268132 transcript_region:SL2.40ch01:81264237..81268132+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00017829g0001.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|2|0|684; (*GB) gi|147805129|emb|CAN64485.1| (e_value=0.0) hypothetical protein VITISV_035038 [Vitis vinifera];; (*SWP) sp|P0C899|PP271_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1;; (*TAIR) AT3G49142.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=686;; (*ITAG) Solyc03g007840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2384211-2386244 transcript_region:SL2.40ch03:2384211..2386244- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00017829g0016.1 protein AED:0.17 eAED:0.17 QI:301|1|1|1|1|0.8|5|163|176; (*GB) gi|351725951|ref|NP_001237366.1| (e_value=2e-39) uncharacterized protein LOC100305578 [Glycine max];; (*SWP) sp|O04616|Y4115_ARATH (e_value=4e-37) Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1;; (*TAIR) AT4G01150.1 (e_value=3e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164;; (*ITAG) Solyc03g007830.2.1 (e_value=9e-83) genomic_reference:SL2.40ch03 gene_region:2380349-2382848 transcript_region:SL2.40ch03:2380349..2382848- functional_description:"Threonine endopeptidase (AHRD V1 *--- B6TCN7_MAIZE)"; NbS00017829g0012.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|302143712|emb|CBI22573.3| (e_value=3e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|P23472|CHLY_HEVBR (e_value=1e-30) Hevamine-A OS=Hevea brasiliensis PE=1 SV=2;; (*TAIR) AT5G24090.1 (e_value=3e-27) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc01g095250.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78348443-78349339 transcript_region:SL2.40ch01:78348443..78349339+ go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 ***- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00056314g0005.1 protein AED:0.15 eAED:0.15 QI:464|1|0.77|1|0.75|0.88|9|276|972; (*GB) gi|359489801|ref|XP_002274993.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera];; (*SWP) sp|Q8GUH1|PUB33_ARATH (e_value=0.0) U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2;; (*TAIR) AT2G45910.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr2:18894520-18898212 FORWARD LENGTH=834;; (*ITAG) Solyc01g094660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77865068-77873889 transcript_region:SL2.40ch01:77865068..77873889+ go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00004030g0009.1 protein AED:0.25 eAED:0.25 QI:297|0.33|0.25|0.5|1|1|4|0|222; (*GB) gi|255550191|ref|XP_002516146.1| (e_value=6e-104) myosin XI, putative [Ricinus communis];; (*SWP) sp|P54696|MYOH_DICDI (e_value=1e-38) Myosin-H heavy chain OS=Dictyostelium discoideum GN=myoH PE=4 SV=3;; (*TAIR) AT4G33200.2 (e_value=5e-91) | Symbols: XI-I | myosin, putative | chr4:16002768-16014792 REVERSE LENGTH=1492;; (*ITAG) Solyc08g061520.2.1 (e_value=4e-127) genomic_reference:SL2.40ch08 gene_region:46068815-46075587 transcript_region:SL2.40ch08:46068815..46075587- go_terms:GO:0030898 functional_description:"Myosin-like protein (AHRD V1 ***- Q0WPU1_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0030898 NbS00004030g0013.1 protein AED:0.28 eAED:0.29 QI:0|0.85|0.78|0.96|0.59|0.64|28|0|1092; (*GB) gi|225429694|ref|XP_002281615.1| (e_value=0.0) PREDICTED: myosin-H heavy chain-like [Vitis vinifera];; (*SWP) sp|Q9Y4I1|MYO5A_HUMAN (e_value=5e-65) Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2;; (*TAIR) AT4G33200.1 (e_value=0.0) | Symbols: XI-I, ATXI-I, XI-15 | myosin, putative | chr4:16002768-16014792 REVERSE LENGTH=1522;; (*ITAG) Solyc08g061500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:46027806-46053197 transcript_region:SL2.40ch08:46027806..46053197- go_terms:GO:0042802 functional_description:"Myosin-like protein (AHRD V1 ***- Q0WPU1_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042802 NbS00004030g0014.1 protein AED:0.51 eAED:0.51 QI:0|0.44|0.2|0.7|0.77|0.7|10|0|328; (*GB) gi|357437345|ref|XP_003588948.1| (e_value=9e-180) Myosin-like protein [Medicago truncatula];; (*SWP) sp|P08799|MYS2_DICDI (e_value=2e-86) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT4G33200.2 (e_value=4e-173) | Symbols: XI-I | myosin, putative | chr4:16002768-16014792 REVERSE LENGTH=1492;; (*ITAG) Solyc08g061520.2.1 (e_value=1e-166) genomic_reference:SL2.40ch08 gene_region:46068815-46075587 transcript_region:SL2.40ch08:46068815..46075587- go_terms:GO:0030898 functional_description:"Myosin-like protein (AHRD V1 ***- Q0WPU1_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0030898 NbS00004030g0011.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0|1|0.5|0.33|3|0|273; (*GB) gi|225429696|ref|XP_002281841.1| (e_value=9e-31) PREDICTED: uncharacterized protein LOC100260963 [Vitis vinifera];; (*TAIR) AT5G21940.1 (e_value=1e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7249446-7250353 REVERSE LENGTH=264;; (*ITAG) Solyc08g061490.2.1 (e_value=5e-29) genomic_reference:SL2.40ch08 gene_region:46025993-46027176 transcript_region:SL2.40ch08:46025993..46027176+ functional_description:"MTD1 (AHRD V1 ***- Q9LLM3_MEDTR)"; NbS00004030g0015.1 protein AED:0.52 eAED:0.65 QI:0|0|0|0.5|0|0|2|0|62; (*GB) gi|224092065|ref|XP_002309460.1| (e_value=2e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT4G33200.2 (e_value=3e-19) | Symbols: XI-I | myosin, putative | chr4:16002768-16014792 REVERSE LENGTH=1492;; (*ITAG) Solyc08g061500.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:46027806-46053197 transcript_region:SL2.40ch08:46027806..46053197- go_terms:GO:0042802 functional_description:"Myosin-like protein (AHRD V1 ***- Q0WPU1_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042802 NbS00002937g0004.1 protein AED:0.04 eAED:0.12 QI:0|0|0|1|1|1|2|0|440; (*GB) gi|225445146|ref|XP_002280643.1| (e_value=6e-136) PREDICTED: E3 ubiquitin-protein ligase ATL42 [Vitis vinifera];; (*SWP) sp|Q5XF85|ATL42_ARATH (e_value=1e-106) E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2;; (*TAIR) AT4G28890.1 (e_value=9e-108) | Symbols: | RING/U-box superfamily protein | chr4:14256437-14257735 REVERSE LENGTH=432;; (*ITAG) Solyc05g018310.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:20435653-20436627 transcript_region:SL2.40ch05:20435653..20436627- go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00002937g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|219; (*GB) gi|255552117|ref|XP_002517103.1| (e_value=1e-124) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8GW61|STP14_ARATH (e_value=4e-109) Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2;; (*TAIR) AT1G77210.2 (e_value=3e-110) | Symbols: STP14 | sugar transporter 14 | chr1:29009036-29010980 REVERSE LENGTH=504;; (*ITAG) Solyc12g008320.1.1 (e_value=3e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1732691-1736090 transcript_region:SL2.40ch12:1732691..1736090+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00002937g0002.1 protein AED:0.35 eAED:0.36 QI:361|0.66|0.75|1|0.33|0|4|396|314; (*GB) gi|75269065|sp|Q53HY2.1|NINJA_TOBAC (e_value=0.0) RecName: Full=Ninja-family protein mc410;; (*SWP) sp|Q53HY2|NINJA_TOBAC (e_value=0.0) Ninja-family protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1;; (*TAIR) AT4G28910.3 (e_value=8e-30) | Symbols: NINJA | novel interactor of JAZ | chr4:14264330-14265680 REVERSE LENGTH=425;; (*ITAG) Solyc05g018320.2.1 (e_value=6e-156) genomic_reference:SL2.40ch05 gene_region:20438192-20445823 transcript_region:SL2.40ch05:20438192..20445823- go_terms:GO:0005515,GO:0016564 functional_description:"Ninja-family protein Os05g0558800 (AHRD V1 ***- NNJA4_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515,GO:0016564 NbS00002937g0010.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|224142179|ref|XP_002324436.1| (e_value=7e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GW61|STP14_ARATH (e_value=2e-39) Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2;; (*TAIR) AT1G77210.2 (e_value=2e-40) | Symbols: STP14 | sugar transporter 14 | chr1:29009036-29010980 REVERSE LENGTH=504;; (*ITAG) Solyc05g018230.2.1 (e_value=5e-55) genomic_reference:SL2.40ch05 gene_region:20267103-20269235 transcript_region:SL2.40ch05:20267103..20269235+ go_terms:GO:0005358 functional_description:"High-affinity glucose transporter (AHRD V1 *-** HGT1_KLULA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358 NbS00024814g0001.1 protein AED:0.33 eAED:0.39 QI:45|0|0.5|1|0|0.5|2|0|277; (*GB) gi|75291821|sp|Q6R567.1|RMA1_CAPAN (e_value=2e-112) RecName: Full=E3 ubiquitin-protein ligase RMA1H1; AltName: Full=Protein RING membrane-anchor 1 homolog 1;; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=5e-114) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G03510.2 (e_value=6e-36) | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | chr4:1557905-1558654 REVERSE LENGTH=249;; (*ITAG) Solyc07g054080.1.1 (e_value=1e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59811811-59812539 transcript_region:SL2.40ch07:59811811..59812539+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6TI40_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00029498g0009.1 protein AED:0.01 eAED:0.01 QI:181|1|1|1|0|0|2|192|305; (*GB) gi|225452924|ref|XP_002284130.1| (e_value=2e-142) PREDICTED: UPF0301 protein Cpha266_0885-like isoform 1 [Vitis vinifera];; (*TAIR) AT3G29240.2 (e_value=2e-121) | Symbols: | Protein of unknown function (DUF179) | chr3:11191780-11192868 FORWARD LENGTH=317;; (*ITAG) Solyc02g067050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31869821-31871550 transcript_region:SL2.40ch02:31869821..31871550+ functional_description:"Uncharacterized ACR COG1678 family protein (AHRD V1 **-- B6SSQ6_MAIZE); contains Interpro domain(s) IPR003774 Protein of unknown function DUF179 "; NbS00029498g0010.1 protein AED:0.00 eAED:0.00 QI:341|1|1|1|1|1|2|406|463; (*GB) gi|225452849|ref|XP_002283706.1| (e_value=6e-169) PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera];; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=7e-89) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=6e-90) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc02g067230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31991100-31994286 transcript_region:SL2.40ch02:31991100..31994286- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00029498g0002.1 protein AED:0.17 eAED:0.45 QI:0|0.5|0|0.66|1|1|3|0|119 NbS00009366g0003.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|185; (*GB) gi|255538050|ref|XP_002510090.1| (e_value=2e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G59590.1 (e_value=9e-16) | Symbols: ZCF37 | ZCF37 | chr1:21887860-21888495 FORWARD LENGTH=211;; (*ITAG) Solyc04g077810.1.1 (e_value=8e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60294924-60295664 transcript_region:SL2.40ch04:60294924..60295664+ functional_description:"Unknown Protein (AHRD V1)"; NbC26031181g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|6|0|493; (*GB) gi|225466227|ref|XP_002267333.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258199 [Vitis vinifera];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=8e-67) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT1G65910.1 (e_value=7e-141) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g081270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39877970-39887403 transcript_region:SL2.40ch02:39877970..39887403+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00032921g0014.1 protein AED:0.04 eAED:0.04 QI:148|1|1|1|1|1|2|245|226; (*GB) gi|350535951|ref|NP_001234222.1| (e_value=3e-119) glutathione-S-transferase [Solanum lycopersicum];; (*SWP) sp|Q9ZW24|GSTU7_ARATH (e_value=2e-55) Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=2e-56) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc01g099590.2.1 (e_value=4e-118) genomic_reference:SL2.40ch01 gene_region:81537869-81539125 transcript_region:SL2.40ch01:81537869..81539125- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione-S-transferase (AHRD V1 **** A3FMP5_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00032921g0013.1 protein AED:0.06 eAED:0.06 QI:149|1|1|1|1|1|3|21|379; (*GB) gi|147768217|emb|CAN73618.1| (e_value=4e-28) hypothetical protein VITISV_004114 [Vitis vinifera];; (*TAIR) AT5G27690.1 (e_value=6e-28) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:9803796-9805036 FORWARD LENGTH=352;; (*ITAG) Solyc01g099600.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:81551049-81552759 transcript_region:SL2.40ch01:81551049..81552759- go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- B6TJ24_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00032921g0019.1 protein AED:0.46 eAED:0.52 QI:0|0|0|1|0.33|0.25|4|0|171; (*GB) gi|147797908|emb|CAN69464.1| (e_value=4e-51) hypothetical protein VITISV_023045 [Vitis vinifera];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=2e-42) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=2e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc01g099530.2.1 (e_value=9e-78) genomic_reference:SL2.40ch01 gene_region:81510268-81515514 transcript_region:SL2.40ch01:81510268..81515514- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M6N0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00032921g0002.1 protein AED:0.38 eAED:0.55 QI:934|0|0.5|1|0|0.5|2|0|131 NbS00032921g0018.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|3|0|1021; (*GB) gi|255566084|ref|XP_002524030.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LER0|PP381_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2;; (*TAIR) AT5G14770.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4772881-4775697 REVERSE LENGTH=938;; (*ITAG) Solyc01g099530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81510268-81515514 transcript_region:SL2.40ch01:81510268..81515514- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M6N0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00060834g0003.1 protein AED:0.55 eAED:0.55 QI:119|0.5|0.66|0.66|0.5|0.33|3|0|64; (*GB) gi|225441581|ref|XP_002281530.1| (e_value=6e-17) PREDICTED: 40S ribosomal protein S28-like [Vitis vinifera];; (*ITAG) Solyc10g078630.1.1 (e_value=3e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbS00014810g0007.1 protein AED:0.28 eAED:0.35 QI:0|0|0|1|0.5|0.33|3|0|111; (*GB) gi|297738229|emb|CBI27430.3| (e_value=9e-32) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SUT2|PER39_ARATH (e_value=4e-16) Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1;; (*TAIR) AT4G11290.1 (e_value=3e-17) | Symbols: | Peroxidase superfamily protein | chr4:6869993-6871476 FORWARD LENGTH=326;; (*ITAG) Solyc02g085930.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00014810g0006.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|237; (*GB) gi|225464604|ref|XP_002274943.1| (e_value=2e-46) PREDICTED: uncharacterized LOC100266405 [Vitis vinifera];; (*SWP) sp|Q9LTD9|Y5278_ARATH (e_value=7e-31) Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1;; (*TAIR) AT5G52780.1 (e_value=6e-32) | Symbols: | Protein of unknown function (DUF3464) | chr5:21390943-21391449 REVERSE LENGTH=168;; (*ITAG) Solyc03g007860.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:2393132-2393689 transcript_region:SL2.40ch03:2393132..2393689+ functional_description:"ABC-type Co2+ transport system permease component (AHRD V1 *--- B6U434_MAIZE)"; NbS00022753g0003.1 protein AED:0.01 eAED:0.01 QI:68|1|1|1|0.5|0.66|3|75|520; (*GB) gi|225452088|ref|XP_002280704.1| (e_value=1e-143) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LF10|CRS1_ARATH (e_value=8e-120) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2;; (*TAIR) AT5G16180.1 (e_value=6e-121) | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast splicing factor CRS1 | chr5:5279884-5282898 FORWARD LENGTH=720;; (*ITAG) Solyc02g086200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43514319-43520365 transcript_region:SL2.40ch02:43514319..43520365+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 ***- CRS1_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00012420g0004.1 protein AED:0.16 eAED:0.16 QI:190|0.9|0.95|1|0.92|0.95|41|305|1511; (*GB) gi|19912731|dbj|BAB88648.1| (e_value=0.0) microtubule bundling polypeptide TMBP200 [Nicotiana tabacum];; (*SWP) sp|Q94FN2|MOR1_ARATH (e_value=0.0) Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1;; (*TAIR) AT2G35630.1 (e_value=0.0) | Symbols: MOR1, GEM1 | ARM repeat superfamily protein | chr2:14966828-14980361 FORWARD LENGTH=1978;; (*ITAG) Solyc02g078640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37856990-37880778 transcript_region:SL2.40ch02:37856990..37880778- go_terms:GO:0008017 functional_description:"Microtubule associated protein (AHRD V1 *--* A8J2Q6_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00009068g0006.1 protein AED:0.19 eAED:0.19 QI:500|1|0.92|1|0.83|0.8|25|401|1356; (*GB) gi|302399131|gb|ADL36860.1| (e_value=0.0) WRKY domain class transcription factor [Malus x domestica];; (*SWP) sp|O04539|SNL4_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3;; (*TAIR) AT1G70060.1 (e_value=0.0) | Symbols: SNL4 | SIN3-like 4 | chr1:26383789-26389568 FORWARD LENGTH=1326;; (*ITAG) Solyc05g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1156675-1164853 transcript_region:SL2.40ch05:1156675..1164853- go_terms:GO:0016564 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0016564 NbS00009068g0009.1 protein AED:0.24 eAED:0.26 QI:176|0.82|0.72|1|0.64|0.61|18|0|1198; (*GB) gi|291464071|gb|ADE05573.1| (e_value=0.0) increased size exclusion limit 2 [Nicotiana benthamiana];; (*SWP) sp|B9DFG3|ISE2_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2;; (*TAIR) AT1G70070.1 (e_value=0.0) | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171;; (*ITAG) Solyc05g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1145002-1155737 transcript_region:SL2.40ch05:1145002..1155737+ go_terms:GO:0003724 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** D9UDE3_9ACTO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003724 NbS00057428g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|0.75|0.33|0|4|0|200; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=2e-48) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=2e-20) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094630.2.1 (e_value=1e-83) genomic_reference:SL2.40ch02 gene_region:49792861-49797173 transcript_region:SL2.40ch02:49792861..49797173- go_terms:GO:0005488 functional_description:"Importin 13 (AHRD V1 **-- B1ASJ5_MOUSE); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005488 NbS00002801g0004.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|136|145; (*GB) gi|388502048|gb|AFK39090.1| (e_value=5e-46) unknown [Lotus japonicus];; (*SWP) sp|P0C8Z0|Y8359_ORYSI (e_value=3e-46) Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2;; (*TAIR) AT4G02450.2 (e_value=4e-40) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc09g075010.2.1 (e_value=6e-63) genomic_reference:SL2.40ch09 gene_region:62288817-62293083 transcript_region:SL2.40ch09:62288817..62293083- functional_description:"Prostaglandin E synthase 3 (AHRD V1 *--- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00024920g0001.1 protein AED:0.13 eAED:0.13 QI:298|1|1|1|0.66|0.75|4|392|287; (*GB) gi|225439795|ref|XP_002276631.1| (e_value=1e-142) PREDICTED: probable protein phosphatase 2C 38-like [Vitis vinifera];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=3e-128) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=2e-129) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc10g084410.1.1 (e_value=5e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63285651-63287625 transcript_region:SL2.40ch10:63285651..63287625- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L0I6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00021460g0005.1 protein AED:0.05 eAED:0.05 QI:494|1|1|1|0.66|0.5|4|185|475; (*GB) gi|255561074|ref|XP_002521549.1| (e_value=2e-116) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G50910.1 (e_value=1e-92) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 76 Blast hits to 75 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:18920189-18921999 FORWARD LENGTH=447;; (*ITAG) Solyc02g085000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42611884-42615629 transcript_region:SL2.40ch02:42611884..42615629- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ1_ARATH)"; NbS00021460g0008.1 protein AED:0.13 eAED:0.15 QI:279|0.6|0.66|1|0.6|0.83|6|0|418; (*GB) gi|225007940|gb|ACN78662.1| (e_value=0.0) endo-beta-mannanase [Actinidia arguta];; (*SWP) sp|Q9FJZ3|MAN7_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=0.0) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc02g084990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42596683-42600186 transcript_region:SL2.40ch02:42596683..42600186- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00033915g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|0|606; (*GB) gi|225444009|ref|XP_002281463.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00003431g0007.1 protein AED:0.16 eAED:0.16 QI:158|0.92|0.92|0.96|0.64|0.65|26|246|875; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*SWP) sp|P31049|FAMT_PSEPU (e_value=6e-46) Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1;; (*TAIR) AT3G23510.1 (e_value=0.0) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00003431g0118.1 protein AED:0.04 eAED:0.04 QI:0|0.4|0.16|1|0.4|0.5|6|0|1064 NbS00003431g0116.1 protein AED:0.15 eAED:0.15 QI:0|1|0.33|1|1|0.33|3|0|133 NbS00003431g0119.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.69|1|0.58|0.46|13|0|394 NbS00003431g0117.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.5|1|0.6|0.5|6|0|300 NbS00036930g0004.1 protein AED:0.04 eAED:0.13 QI:0|0.33|0|1|0|0.5|4|0|278; (*GB) gi|350536305|ref|NP_001233984.1| (e_value=1e-36) p27KIP1-related-protein 2 [Solanum lycopersicum];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=9e-26) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=7e-27) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc09g061280.2.1 (e_value=5e-43) genomic_reference:SL2.40ch09 gene_region:54128553-54131207 transcript_region:SL2.40ch09:54128553..54131207- go_terms:GO:0030332 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 **** Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0030332 NbS00029215g0008.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|185; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-28) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=7e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00029215g0009.1 protein AED:0.31 eAED:0.32 QI:0|0.92|0.86|1|0.78|0.73|15|0|396; (*GB) gi|225454216|ref|XP_002273474.1| (e_value=0.0) PREDICTED: acyl-coenzyme A thioesterase 8 [Vitis vinifera];; (*SWP) sp|P58137|ACOT8_MOUSE (e_value=3e-55) Acyl-coenzyme A thioesterase 8 OS=Mus musculus GN=Acot8 PE=1 SV=1;; (*TAIR) AT1G01710.1 (e_value=0.0) | Symbols: | Acyl-CoA thioesterase family protein | chr1:262950-266029 FORWARD LENGTH=427;; (*ITAG) Solyc01g094550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77737129-77748404 transcript_region:SL2.40ch01:77737129..77748404+ go_terms:GO:0006637 functional_description:"Acyl-CoA thioesterase family protein (AHRD V1 ***- D7KP80_ARALY); contains Interpro domain(s) IPR003703 Acyl-CoA thioesterase "; GO:0006637 NbS00029215g0007.1 protein AED:0.69 eAED:0.88 QI:0|0|0|0.25|1|1|4|0|183 NbS00031796g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|225452101|ref|XP_002284159.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100254978 [Vitis vinifera];; (*ITAG) Solyc02g086260.1.1 (e_value=5e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:43554211-43554672 transcript_region:SL2.40ch02:43554211..43554672- functional_description:"Unknown Protein (AHRD V1)"; NbS00040429g0004.1 protein AED:0.35 eAED:0.35 QI:238|0.7|0.63|1|0.2|0.27|11|359|236; (*GB) gi|225453664|ref|XP_002268438.1| (e_value=1e-54) PREDICTED: protein arv1 homolog [Vitis vinifera];; (*TAIR) AT1G01020.1 (e_value=4e-37) | Symbols: ARV1 | Arv1-like protein | chr1:6915-8666 REVERSE LENGTH=245;; (*ITAG) Solyc11g008790.1.1 (e_value=5e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2971603-2976450 transcript_region:SL2.40ch11:2971603..2976450+ functional_description:"ARV1 (AHRD V1 ***- Q5MK24_ARATH); contains Interpro domain(s) IPR007290 Arv1-like protein "; NbS00014086g0005.1 protein AED:0.27 eAED:0.27 QI:175|0.8|1|1|0.8|0.66|6|187|395; (*GB) gi|255566211|ref|XP_002524093.1| (e_value=4e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35880.1 (e_value=1e-14) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr2:15063204-15065259 REVERSE LENGTH=432;; (*ITAG) Solyc01g006830.2.1 (e_value=6e-143) genomic_reference:SL2.40ch01 gene_region:1399451-1402397 transcript_region:SL2.40ch01:1399451..1402397- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00009152g0004.1 protein AED:0.14 eAED:0.20 QI:0|0|0|1|0|0.5|4|0|332; (*ITAG) Solyc11g012550.1.1 (e_value=6e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5357146-5365080 transcript_region:SL2.40ch11:5357146..5365080+ functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019156g0014.1 protein AED:0.30 eAED:0.40 QI:35|0|0|0.85|0.33|0.28|7|0|1470; (*GB) gi|237899607|gb|ACR33108.1| (e_value=0.0) verticillium wilt disease resistance protein [Solanum lycopersicum];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=5e-85) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05650.1 (e_value=1e-106) | Symbols: AtRLP32, RLP32 | receptor like protein 32 | chr3:1645884-1648490 REVERSE LENGTH=868;; (*ITAG) Solyc10g076500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58808007-58810535 transcript_region:SL2.40ch10:58808007..58810535- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00019156g0016.1 protein AED:0.47 eAED:0.55 QI:0|0|0|1|0|0.5|2|0|177; (*GB) gi|34761800|gb|AAQ82053.1| (e_value=8e-40) verticillium wilt disease resistance protein precursor [Solanum torvum];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=9e-16) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT3G11080.1 (e_value=3e-18) | Symbols: AtRLP35, RLP35 | receptor like protein 35 | chr3:3470481-3473312 FORWARD LENGTH=943;; (*ITAG) Solyc10g076500.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58808007-58810535 transcript_region:SL2.40ch10:58808007..58810535- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00019156g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.66|1|0|0.33|3|4407|221; (*GB) gi|357506079|ref|XP_003623328.1| (e_value=3e-125) Ammonium transporter 3 member [Medicago truncatula];; (*SWP) sp|Q8S230|AMT22_ORYSJ (e_value=4e-109) Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2;; (*TAIR) AT2G38290.1 (e_value=7e-109) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc10g076480.1.1 (e_value=5e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58796692-58799491 transcript_region:SL2.40ch10:58796692..58799491+ go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9HCZ0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00019156g0013.1 protein AED:0.11 eAED:0.17 QI:0|0.25|0|0.8|0.75|0.8|5|0|301; (*GB) gi|225439489|ref|XP_002268055.1| (e_value=3e-57) PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=2e-25) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=1e-49) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc10g076460.1.1 (e_value=2e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58766004-58767607 transcript_region:SL2.40ch10:58766004..58767607+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q2QYV2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00043607g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|225438430|ref|XP_002276539.1| (e_value=3e-47) PREDICTED: RING-H2 finger protein ATL80 [Vitis vinifera];; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=3e-40) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=3e-41) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc02g082420.2.1 (e_value=7e-57) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00060493g0004.1 protein AED:0.27 eAED:0.27 QI:127|1|0.6|1|0.75|0.8|5|0|366; (*GB) gi|255568155|ref|XP_002525053.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=0.0) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc01g067400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68270103-68279664 transcript_region:SL2.40ch01:68270103..68279664- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00035780g0007.1 protein AED:0.04 eAED:0.04 QI:53|0.66|0.5|1|0|0.5|4|259|323; (*GB) gi|225441481|ref|XP_002275747.1| (e_value=2e-65) PREDICTED: homeobox-leucine zipper protein HAT14-like [Vitis vinifera];; (*SWP) sp|P46665|HAT14_ARATH (e_value=8e-52) Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3;; (*TAIR) AT5G06710.1 (e_value=6e-53) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336;; (*ITAG) Solyc10g080540.1.1 (e_value=8e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61109021-61111955 transcript_region:SL2.40ch10:61109021..61111955+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 ***- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00035780g0008.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|2|0|177; (*GB) gi|3065895|gb|AAC14323.1| (e_value=1e-62) TSI1 [Nicotiana tabacum];; (*SWP) sp|O04682|PTI6_SOLLC (e_value=3e-52) Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1;; (*TAIR) AT4G27950.1 (e_value=3e-21) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g082590.1.1 (e_value=2e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44653700-44654446 transcript_region:SL2.40ch06:44653700..44654446- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR017392 Pathogenesis-related genes transcriptional activator PTI6 "; GO:0003677,GO:0006355 NbS00033630g0008.1 protein AED:0.26 eAED:0.48 QI:0|0|0|0.5|0|0.5|2|0|122; (*GB) gi|258617486|gb|ACV83769.1| (e_value=2e-13) RNase Phy3, partial [Petunia x hybrida]; NbC24193759g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|373839527|gb|AEY76159.1| (e_value=8e-61) actin, partial [Dioscorea zingiberensis];; (*SWP) sp|P93372|ACT4_TOBAC (e_value=2e-61) Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=8e-60) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc01g104770.2.1 (e_value=3e-60) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00010473g0008.1 protein AED:0.19 eAED:0.21 QI:0|0.57|0.37|0.87|0.57|0.5|8|0|822; (*GB) gi|147800889|emb|CAN71184.1| (e_value=0.0) hypothetical protein VITISV_033417 [Vitis vinifera];; (*TAIR) AT5G47400.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19229162-19232586 FORWARD LENGTH=862;; (*ITAG) Solyc08g078440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59413895-59418767 transcript_region:SL2.40ch08:59413895..59418767+ functional_description:"Genomic DNA chromosome 5 P1 clone MQL5 (AHRD V1 ***- Q9LVR9_ARATH)"; NbS00010473g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.16|0.83|0.6|0.83|6|0|583; (*GB) gi|296083497|emb|CBI23466.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=2e-112) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G16745.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:9412185-9414053 FORWARD LENGTH=542;; (*ITAG) Solyc08g078450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59419628-59422333 transcript_region:SL2.40ch08:59419628..59422333- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00017693g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.57|1|0.33|0.14|7|129|1017; (*GB) gi|147794281|emb|CAN67079.1| (e_value=0.0) hypothetical protein VITISV_004500 [Vitis vinifera];; (*SWP) sp|D1FP53|LIN_MEDTR (e_value=2e-40) Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1;; (*ITAG) Solyc02g069290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33802470-33806435 transcript_region:SL2.40ch02:33802470..33806435- go_terms:GO:0005488 functional_description:"Transducin-like (AHRD V1 **-- Q6H6D6_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00017693g0007.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0|1|0.66|0.5|4|0|151; (*GB) gi|258549503|gb|ACV74414.1| (e_value=1e-70) putative cinnamyl alcohol dehydrogenase [Camellia sinensis];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=1e-60) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT4G39330.1 (e_value=1e-50) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc02g069250.2.1 (e_value=2e-81) genomic_reference:SL2.40ch02 gene_region:33766134-33768061 transcript_region:SL2.40ch02:33766134..33768061- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** A9PHZ1_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00017693g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|166; (*GB) gi|255539034|ref|XP_002510582.1| (e_value=1e-49) alcohol dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=3e-34) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT1G72680.1 (e_value=2e-27) | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase | chr1:27359346-27360876 REVERSE LENGTH=355;; (*ITAG) Solyc02g069250.2.1 (e_value=6e-67) genomic_reference:SL2.40ch02 gene_region:33766134-33768061 transcript_region:SL2.40ch02:33766134..33768061- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** A9PHZ1_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00010762g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0|0.66|3|137|108; (*GB) gi|343424521|gb|AEM24937.1| (e_value=1e-48) thionin-like protein [Nicotiana tabacum];; (*ITAG) Solyc10g007870.2.1 (e_value=1e-27) genomic_reference:SL2.40ch10 gene_region:2075626-2077518 transcript_region:SL2.40ch10:2075626..2077518+ functional_description:"Tumor-related protein (AHRD V1 ***- Q40447_9SOLA)"; NbS00022257g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|225431177|ref|XP_002269841.1| (e_value=0.0) PREDICTED: GDP-mannose 4,6 dehydratase 2 [Vitis vinifera];; (*SWP) sp|P93031|GMD2_ARATH (e_value=0.0) GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3;; (*TAIR) AT3G51160.1 (e_value=0.0) | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19007232-19008353 REVERSE LENGTH=373;; (*ITAG) Solyc02g084210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41957831-41958916 transcript_region:SL2.40ch02:41957831..41958916+ go_terms:GO:0008446 functional_description:"GDP-mannose 4 6-dehydratase (AHRD V1 **** B7XH28_NICBE); contains Interpro domain(s) IPR006368 GDP-mannose 4,6-dehydratase "; GO:0008446 NbS00022257g0008.1 protein AED:0.00 eAED:0.00 QI:112|1|1|1|0|0.5|2|334|301; (*GB) gi|319718165|gb|ADV59384.1| (e_value=0.0) GAGA-binding transcriptional activator [Nicotiana tabacum];; (*SWP) sp|Q5VSA8|BBRD_ORYSJ (e_value=1e-81) Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1;; (*TAIR) AT5G42520.2 (e_value=3e-78) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=338;; (*ITAG) Solyc02g084230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41967741-41968607 transcript_region:SL2.40ch02:41967741..41968607- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00022257g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.83|1|1|1|6|0|205; (*GB) gi|225431179|ref|XP_002269956.1| (e_value=1e-105) PREDICTED: uncharacterized protein LOC100259183 [Vitis vinifera];; (*TAIR) AT5G66290.1 (e_value=1e-94) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26477917-26479441 REVERSE LENGTH=202;; (*ITAG) Solyc02g084220.2.1 (e_value=1e-124) genomic_reference:SL2.40ch02 gene_region:41960519-41967145 transcript_region:SL2.40ch02:41960519..41967145- functional_description:"Genomic DNA chromosome 5 TAC clone K1L20 (AHRD V1 ***- Q9FH60_ARATH)"; NbS00012006g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.25|0|0.8|1|1|5|0|553; (*GB) gi|3107905|dbj|BAA25906.1| (e_value=0.0) leaf protein [Ipomoea nil];; (*SWP) sp|Q8S9D1|PP395_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1;; (*TAIR) AT5G21222.1 (e_value=0.0) | Symbols: | protein kinase family protein | chr5:7209422-7213700 FORWARD LENGTH=831;; (*ITAG) Solyc07g032380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:37904500-37908632 transcript_region:SL2.40ch07:37904500..37908632- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4J8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012006g0012.1 protein AED:0.23 eAED:0.23 QI:161|0.83|0.57|1|0.83|0.85|7|0|460; (*GB) gi|225445236|ref|XP_002280965.1| (e_value=0.0) PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera];; (*SWP) sp|O22025|CFXQ_CYAME (e_value=2e-41) Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2;; (*TAIR) AT3G24530.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945678-8947786 REVERSE LENGTH=481;; (*ITAG) Solyc12g007100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1537587-1541140 transcript_region:SL2.40ch12:1537587..1541140- go_terms:GO:0030506 functional_description:"Ankyrin repeat domain-containing protein 1 (AHRD V1 *--* ANKR1_CHICK); contains Interpro domain(s) IPR000641 CbxX/CfqX "; GO:0030506 NbS00012006g0102.1 protein AED:0.17 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|588 NbS00012006g0107.1 protein AED:0.07 eAED:0.07 QI:32|0.5|1|1|1|1|3|370|45 NbS00012006g0106.1 protein AED:0.59 eAED:0.66 QI:0|0.33|0|0.75|1|1|4|0|86 NbS00043327g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|376; (*ITAG) Solyc08g077950.1.1 (e_value=9e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:59006972-59008069 transcript_region:SL2.40ch08:59006972..59008069+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043327g0005.1 protein AED:0.15 eAED:0.15 QI:7|1|0.87|1|1|1|8|387|532; (*GB) gi|118486445|gb|ABK95062.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8W4H1|GAT26_ARATH (e_value=8e-129) GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1;; (*TAIR) AT4G17570.3 (e_value=6e-135) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514;; (*ITAG) Solyc08g077960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59008791-59015369 transcript_region:SL2.40ch08:59008791..59015369- go_terms:GO:0006355 functional_description:"GATA transcription factor 29 (AHRD V1 *-*- B4FZE9_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00020698g0007.1 protein AED:0.14 eAED:0.14 QI:63|0.78|0.73|1|0.78|0.8|15|373|628; (*GB) gi|27529830|dbj|BAC53930.1| (e_value=0.0) amidase-like protein [Nicotiana tabacum];; (*SWP) sp|Q31F53|GATA_THICR (e_value=2e-31) Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1;; (*TAIR) AT5G07360.1 (e_value=0.0) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659;; (*ITAG) Solyc03g118030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61071281-61076037 transcript_region:SL2.40ch03:61071281..61076037- go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- Q2S207_SALRD); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00020698g0004.1 protein AED:0.17 eAED:0.20 QI:377|0.64|0.5|1|0.88|0.94|18|0|1027; (*GB) gi|225447723|ref|XP_002273150.1| (e_value=0.0) PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q66X93|SND1_RAT (e_value=3e-130) Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1;; (*TAIR) AT5G07350.1 (e_value=0.0) | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protein 1 | chr5:2320344-2324892 REVERSE LENGTH=991;; (*ITAG) Solyc03g118020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61058382-61065557 transcript_region:SL2.40ch03:61058382..61065557- go_terms:GO:0003713,GO:0003723 functional_description:"Tudor / nuclease domain-containing protein (AHRD V1 ***- B6KG97_TOXGO); contains Interpro domain(s) IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN "; GO:0003713,GO:0003723 NbS00020750g0003.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|199; (*GB) gi|343796222|gb|AEM63548.1| (e_value=2e-43) dehydration-responsive element-binding protein DREB1 [Solanum tuberosum];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=2e-42) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=1e-43) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc12g044390.1.1 (e_value=8e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44746654-44747085 transcript_region:SL2.40ch12:44746654..44747085+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00037732g0008.1 protein AED:0.41 eAED:0.41 QI:168|0.90|0.91|1|0.72|0.75|12|0|441; (*GB) gi|225441034|ref|XP_002277784.1| (e_value=0.0) PREDICTED: 3-deoxy-D-manno-octulosonic-acid transferase [Vitis vinifera];; (*SWP) sp|P0AC75|KDTA_ECOLI (e_value=1e-55) 3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli (strain K12) GN=waaA PE=3 SV=1;; (*TAIR) AT5G03770.1 (e_value=0.0) | Symbols: KDTA | KDO transferase A | chr5:995191-997622 FORWARD LENGTH=447;; (*ITAG) Solyc10g083710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62797919-62805976 transcript_region:SL2.40ch10:62797919..62805976+ go_terms:GO:0005975 functional_description:"3-deoxy-D-manno-octulosonic acid transferase-like protein (AHRD V1 ***- Q8VZA5_ARATH); contains Interpro domain(s) IPR007507 Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal "; GO:0005975 NbC23171932g0001.1 protein AED:0.21 eAED:0.21 QI:30|-1|0|1|-1|1|1|0|54; (*GB) gi|68566314|sp|Q43364.1|EFTUB_NICSY (e_value=9e-29) RecName: Full=Elongation factor TuB, chloroplastic; Short=EF-TuB; Flags: Precursor;; (*SWP) sp|Q43364|EFTUB_NICSY (e_value=3e-30) Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1;; (*TAIR) AT4G20360.1 (e_value=1e-25) | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase homolog E1B | chr4:10990036-10991466 FORWARD LENGTH=476;; (*ITAG) Solyc06g071790.2.1 (e_value=4e-31) genomic_reference:SL2.40ch06 gene_region:40601620-40603444 transcript_region:SL2.40ch06:40601620..40603444- go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** D7MFK2_ARALY); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00035046g0007.1 protein AED:0.20 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|77; (*GB) gi|255559619|ref|XP_002520829.1| (e_value=3e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G05550.1 (e_value=3e-11) | Symbols: | Hypoxia-responsive family protein | chr3:1612860-1613748 FORWARD LENGTH=97;; (*ITAG) Solyc06g050870.2.1 (e_value=4e-42) genomic_reference:SL2.40ch06 gene_region:30207438-30207966 transcript_region:SL2.40ch06:30207438..30207966- functional_description:"Hypoxia induced protein conserved region containing protein expressed (AHRD V1 ***- Q2QYP0_ORYSJ)"; NbS00012063g0012.1 protein AED:0.03 eAED:0.03 QI:479|0.5|0.33|1|0|0.33|3|0|508; (*GB) gi|225439570|ref|XP_002264939.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263765 [Vitis vinifera];; (*TAIR) AT5G01710.1 (e_value=0.0) | Symbols: | methyltransferases | chr5:263709-265250 REVERSE LENGTH=513;; (*ITAG) Solyc09g015040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7854568-7856100 transcript_region:SL2.40ch09:7854568..7856100+ functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00012063g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.62|0.87|0.71|0.75|8|0|311; (*GB) gi|297810233|ref|XP_002873000.1| (e_value=3e-158) hypothetical protein ARALYDRAFT_486904 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P23901|ALDR_HORVU (e_value=2e-155) Aldose reductase OS=Hordeum vulgare PE=1 SV=1;; (*TAIR) AT5G01670.1 (e_value=1e-158) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:252000-253856 FORWARD LENGTH=322;; (*ITAG) Solyc09g015070.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7889720-7892947 transcript_region:SL2.40ch09:7889720..7892947- go_terms:GO:0045290 functional_description:"Reductase 1 (AHRD V1 ***- Q6TY49_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0045290 NbS00035183g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|453; (*GB) gi|225433491|ref|XP_002265088.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera];; (*SWP) sp|Q9LIS3|GAE6_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1;; (*TAIR) AT3G23820.1 (e_value=0.0) | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460;; (*ITAG) Solyc09g092330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66806933-66808291 transcript_region:SL2.40ch09:66806933..66808291- go_terms:GO:0042803 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0042803 NbS00039920g0005.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|225428047|ref|XP_002279232.1| (e_value=4e-59) PREDICTED: SKP1-like protein 1A [Vitis vinifera];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=8e-57) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=6e-58) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc03g112710.1.1 (e_value=4e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57118059-57118514 transcript_region:SL2.40ch03:57118059..57118514+ go_terms:GO:0005515 functional_description:"SKP1-like protein 1 (AHRD V1 ***- B2LUR1_MALDO); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00039920g0013.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|0.33|0.75|4|0|294; (*GB) gi|255560832|ref|XP_002521429.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6GQE1|T184C_XENLA (e_value=4e-41) Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1;; (*TAIR) AT4G21570.1 (e_value=1e-162) | Symbols: | Protein of unknown function (DUF300) | chr4:11471126-11472269 REVERSE LENGTH=294;; (*ITAG) Solyc02g078960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38148904-38153001 transcript_region:SL2.40ch02:38148904..38153001+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A9UM61_XENTR); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00039920g0004.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|0|0.5|2|61|286; (*GB) gi|296090223|emb|CBI40042.3| (e_value=1e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|P37545|YABD_BACSU (e_value=2e-20) Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1;; (*TAIR) AT5G17570.1 (e_value=3e-111) | Symbols: | TatD related DNase | chr5:5792948-5794580 FORWARD LENGTH=325;; (*ITAG) Solyc02g078980.2.1 (e_value=2e-148) genomic_reference:SL2.40ch02 gene_region:38167769-38169000 transcript_region:SL2.40ch02:38167769..38169000- go_terms:GO:0005515,GO:0008296 functional_description:"Deoxyribonuclease TatD family (AHRD V1 ***- Q3DD21_STRAG); contains Interpro domain(s) IPR012278 Deoxyribonuclease, TatD Mg-dependent "; GO:0005515,GO:0008296 NbS00039920g0014.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|0|0|4|0|608; (*GB) gi|307135979|gb|ADN33838.1| (e_value=0.0) pre-mRNA splicing factor [Cucumis melo subsp. melo];; (*SWP) sp|Q9DC48|PRP17_MOUSE (e_value=4e-163) Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1;; (*TAIR) AT1G10580.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3491560-3493665 REVERSE LENGTH=573;; (*ITAG) Solyc02g078970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38153830-38158196 transcript_region:SL2.40ch02:38153830..38158196- go_terms:GO:0003676 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (AHRD V1 *--* GBB1_DANRE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003676 NbS00014364g0023.1 protein AED:0.04 eAED:0.04 QI:739|1|1|1|1|1|2|179|258; (*GB) gi|85068644|gb|ABC69402.1| (e_value=0.0) CYP71D5v2 [Nicotiana tabacum];; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=1e-112) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26300.1 (e_value=2e-69) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc08g074260.2.1 (e_value=5e-180) genomic_reference:SL2.40ch08 gene_region:55532953-55534651 transcript_region:SL2.40ch08:55532953..55534651+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014364g0024.1 protein AED:0.10 eAED:0.10 QI:418|0.78|0.8|0.93|0.85|0.86|15|345|489; (*GB) gi|224115694|ref|XP_002332119.1| (e_value=7e-175) predicted protein [Populus trichocarpa];; (*TAIR) AT4G31340.1 (e_value=3e-156) | Symbols: | myosin heavy chain-related | chr4:15205662-15208950 FORWARD LENGTH=437;; (*ITAG) Solyc08g074290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55567712-55577475 transcript_region:SL2.40ch08:55567712..55577475+ functional_description:"BRI1-KD interacting protein 129 (Fragment) (AHRD V1 *-*- Q761Y5_ORYSJ)"; NbS00014364g0013.1 protein AED:0.45 eAED:0.65 QI:0|0|0|0.33|1|0.83|6|0|340 NbS00014364g0025.1 protein AED:0.08 eAED:0.08 QI:36|0.83|0.84|1|1|1|13|348|606; (*GB) gi|110825715|sp|Q38JU2.2|CRYD_SOLLC (e_value=0.0) RecName: Full=Cryptochrome DASH, chloroplastic/mitochondrial; AltName: Full=Cryptochrome-3; Flags: Precursor;; (*SWP) sp|Q38JU2|CRYD_SOLLC (e_value=0.0) Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2;; (*TAIR) AT5G24850.1 (e_value=0.0) | Symbols: CRY3 | cryptochrome 3 | chr5:8535399-8538016 REVERSE LENGTH=526;; (*ITAG) Solyc08g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55534991-55540303 transcript_region:SL2.40ch08:55534991..55540303- go_terms:GO:0003684 functional_description:"Cryptochrome 3"; GO:0003684 NbS00014364g0008.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|0.8|0.83|6|167|538; (*GB) gi|257831439|gb|ACV71020.1| (e_value=0.0) UPA21 [Capsicum annuum];; (*TAIR) AT4G26000.1 (e_value=3e-129) | Symbols: PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH=495;; (*ITAG) Solyc07g008490.2.1 (e_value=3e-132) genomic_reference:SL2.40ch07 gene_region:3392921-3399097 transcript_region:SL2.40ch07:3392921..3399097- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6TJ76_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00014364g0011.1 protein AED:0.20 eAED:0.28 QI:0|0|0|1|1|1|2|0|112 NbS00021913g0008.1 protein AED:0.03 eAED:0.03 QI:12|0.66|0.5|1|0|0.25|4|171|333; (*GB) gi|224054073|ref|XP_002298091.1| (e_value=3e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q52532|MHPC_PSESP (e_value=1e-11) 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Pseudomonas sp. GN=mhpC PE=3 SV=1;; (*TAIR) AT1G17430.1 (e_value=4e-93) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:5982310-5983919 FORWARD LENGTH=332;; (*ITAG) Solyc03g123390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64313562-64317751 transcript_region:SL2.40ch03:64313562..64317751+ functional_description:"Hydrolase (AHRD V1 ***- Q4PSG2_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00021913g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|222051768|dbj|BAH15357.1| (e_value=6e-127) germin like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZRA4|AB19A_PRUPE (e_value=1e-97) Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1;; (*TAIR) AT1G72610.1 (e_value=2e-91) | Symbols: GLP1, ATGER1, GER1 | germin-like protein 1 | chr1:27339302-27339928 REVERSE LENGTH=208;; (*ITAG) Solyc03g123410.1.1 (e_value=2e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64320774-64321400 transcript_region:SL2.40ch03:64320774..64321400- go_terms:GO:0050162 functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00021913g0011.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|523; (*GB) gi|116006458|gb|ABJ51763.1| (e_value=0.0) nodulation signaling pathway 1-like protein [Nicotiana benthamiana];; (*SWP) sp|Q4VYC8|NSP1_MEDTR (e_value=4e-180) Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1;; (*TAIR) AT3G13840.1 (e_value=7e-138) | Symbols: | GRAS family transcription factor | chr3:4555305-4556837 REVERSE LENGTH=510;; (*ITAG) Solyc03g123400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64317825-64319453 transcript_region:SL2.40ch03:64317825..64319453- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* Q4VYC4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00060792g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|350536071|ref|NP_001234228.1| (e_value=0.0) salt responsive protein 2 [Solanum lycopersicum];; (*SWP) sp|Q96MB7|HARB1_HUMAN (e_value=4e-20) Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1;; (*TAIR) AT5G12010.1 (e_value=2e-165) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc12g009000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2301084-2302538 transcript_region:SL2.40ch12:2301084..2302538+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; GO:0016042 NbS00001842g0002.1 protein AED:0.71 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|122 NbS00001842g0006.1 protein AED:0.31 eAED:0.82 QI:0|0|0|1|0|0|2|0|224; (*GB) gi|57013881|ref|YP_173355.1| (e_value=9e-18) hypothetical protein NitaMp007 [Nicotiana tabacum]; NbS00001842g0005.1 protein AED:0.41 eAED:0.47 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=1e-33) Maturase [Medicago truncatula];; (*ITAG) Solyc11g056320.1.1 (e_value=2e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43097712-43098062 transcript_region:SL2.40ch11:43097712..43098062- functional_description:"Unknown Protein (AHRD V1)"; NbS00013713g0012.1 protein AED:0.02 eAED:0.04 QI:0|1|0|1|1|1|2|0|506; (*GB) gi|326509533|dbj|BAJ91683.1| (e_value=1e-61) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q5REM8|TM205_PONAB (e_value=3e-17) Transmembrane protein 205 OS=Pongo abelii GN=TMEM205 PE=2 SV=1;; (*TAIR) AT1G72100.1 (e_value=2e-46) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr1:27127250-27128811 FORWARD LENGTH=480;; (*ITAG) Solyc11g022530.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14399375-14401655 transcript_region:SL2.40ch11:14399375..14401655- functional_description:"Transmembrane protein 205 (AHRD V1 *-*- B9EN72_SALSA)"; NbS00013713g0010.1 protein AED:0.51 eAED:0.84 QI:0|0|0|0.66|0.5|0|3|0|329; (*GB) gi|356505262|ref|XP_003521411.1| (e_value=1e-46) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Glycine max];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=6e-41) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=4e-42) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=4e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00013713g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|72 NbS00013713g0015.1 protein AED:0.50 eAED:0.50 QI:0|0.75|0.8|1|0.5|0.4|5|24|169; (*GB) gi|34329680|gb|AAQ63971.1| (e_value=8e-39) unknown [Nicotiana benthamiana];; (*TAIR) AT3G04710.2 (e_value=3e-13) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1278229-1280942 FORWARD LENGTH=455;; (*ITAG) Solyc01g097190.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:79885940-79899140 transcript_region:SL2.40ch01:79885940..79899140+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein-like (AHRD V1 ***- Q6K268_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00024588g0005.1 protein AED:0.05 eAED:0.09 QI:0|0.14|0.25|1|0.42|0.37|8|0|968; (*GB) gi|225447592|ref|XP_002272218.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Vitis vinifera];; (*SWP) sp|Q9H270|VPS11_HUMAN (e_value=0.0) Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens GN=VPS11 PE=1 SV=1;; (*TAIR) AT2G05170.1 (e_value=0.0) | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11 | chr2:1870020-1873278 FORWARD LENGTH=932;; (*ITAG) Solyc06g065170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37022881-37028663 transcript_region:SL2.40ch06:37022881..37028663+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting protein (AHRD V1 ***- C5JFZ3_AJEDS); contains Interpro domain(s) IPR016528 Vacuolar protein sorting-associated protein 11 "; GO:0005515 NbS00051664g0001.1 protein AED:0.38 eAED:0.38 QI:65|0|0.5|0.5|1|1|2|0|64; (*ITAG) Solyc07g065880.2.1 (e_value=6e-15) genomic_reference:SL2.40ch07 gene_region:64689631-64698266 transcript_region:SL2.40ch07:64689631..64698266- go_terms:GO:0005576,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005576,GO:0007018 NbS00004989g0012.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.4|0|0.2|5|0|451; (*GB) gi|255555985|ref|XP_002519027.1| (e_value=5e-154) lactosylceramide 4-alpha-galactosyltransferase, putative [Ricinus communis];; (*SWP) sp|P0C8Q4|Y4990_ARATH (e_value=2e-27) Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1;; (*TAIR) AT1G61050.1 (e_value=7e-120) | Symbols: | alpha 1,4-glycosyltransferase family protein | chr1:22486736-22488043 FORWARD LENGTH=435;; (*ITAG) Solyc02g078590.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37829569-37830858 transcript_region:SL2.40ch02:37829569..37830858+ go_terms:GO:0005795 functional_description:"Alpha-1 4-galactosyltransferase (AHRD V1 *-*- Q0R0H6_MOUSE); contains Interpro domain(s) IPR007652 Alpha 1,4-glycosyltransferase conserved region "; GO:0005795 NbS00004989g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|654; (*GB) gi|255555987|ref|XP_002519028.1| (e_value=0.0) RNA polymerase-associated protein RTF1, putative [Ricinus communis];; (*SWP) sp|Q92541|RTF1_HUMAN (e_value=6e-20) RNA polymerase-associated protein RTF1 homolog OS=Homo sapiens GN=RTF1 PE=1 SV=4;; (*TAIR) AT1G61040.1 (e_value=0.0) | Symbols: VIP5 | plus-3 domain-containing protein | chr1:22483817-22485748 FORWARD LENGTH=643;; (*ITAG) Solyc02g078580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37822668-37824605 transcript_region:SL2.40ch02:37822668..37824605+ go_terms:GO:0005634 functional_description:"Paf1/RNA polymerase II complex (AHRD V1 **-- Q2U0F7_ASPOR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634 NbS00004989g0011.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.33|0.5|0.66|3|0|90; (*ITAG) Solyc08g007350.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00004989g0010.1 protein AED:0.13 eAED:0.13 QI:394|1|1|1|1|1|2|487|511; (*GB) gi|310877838|gb|ADP37150.1| (e_value=0.0) putative polyol/monosaccharide transporter [Vitis vinifera];; (*SWP) sp|Q0WUU6|PLT4_ARATH (e_value=0.0) Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1;; (*TAIR) AT2G20780.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:8947496-8949170 REVERSE LENGTH=526;; (*ITAG) Solyc02g078600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37832984-37835542 transcript_region:SL2.40ch02:37832984..37835542- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00009695g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|0.8|0.83|6|0|600; (*GB) gi|225442268|ref|XP_002279431.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc05g018870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:24430676-24434108 transcript_region:SL2.40ch05:24430676..24434108- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00003756g0022.1 protein AED:0.19 eAED:0.19 QI:452|1|1|1|0.62|0.55|9|592|227; (*GB) gi|225425581|ref|XP_002263764.1| (e_value=2e-101) PREDICTED: UPF0712 protein C7orf64 homolog [Vitis vinifera];; (*SWP) sp|A4FVJ7|RBM48_DANRE (e_value=1e-28) RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1;; (*TAIR) AT2G27790.2 (e_value=7e-91) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:11847335-11849285 REVERSE LENGTH=240;; (*ITAG) Solyc08g067820.2.1 (e_value=2e-140) genomic_reference:SL2.40ch08 gene_region:54067860-54072142 transcript_region:SL2.40ch08:54067860..54072142+ go_terms:GO:0003676,GO:0000166 functional_description:"UPF0712 protein C7orf64 homolog (AHRD V1 *--- CG064_DANRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00003756g0023.1 protein AED:0.23 eAED:0.23 QI:17|0.4|0.16|1|0|0|6|15|186; (*ITAG) Solyc07g032800.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00003756g0024.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0|0.2|5|0|339; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-73) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00003756g0025.1 protein AED:0.39 eAED:0.39 QI:0|1|0.71|1|1|0.85|7|0|161; (*GB) gi|224092386|ref|XP_002309586.1| (e_value=1e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|P82715|PPD5_ARATH (e_value=6e-93) PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3;; (*TAIR) AT5G11450.1 (e_value=5e-94) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr5:3654475-3656357 FORWARD LENGTH=297;; (*ITAG) Solyc08g067840.2.1 (e_value=2e-104) genomic_reference:SL2.40ch08 gene_region:54082270-54090382 transcript_region:SL2.40ch08:54082270..54090382+ go_terms:GO:0019898 functional_description:"PsbP domain-containing protein 5, chloroplastic (AHRD V1 **-- PPD5_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00003756g0028.1 protein AED:0.02 eAED:0.03 QI:64|0.87|0.77|1|0.87|0.77|9|0|1076; (*GB) gi|296081931|emb|CBI20936.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25660.1 (e_value=0.0) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067870.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:54128245-54135104 transcript_region:SL2.40ch08:54128245..54135104- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q016Y8_OSTTA)"; NbS00003756g0020.1 protein AED:0.09 eAED:0.09 QI:0|0.86|0.87|1|0.86|0.87|16|0|1270; (*GB) gi|255551116|ref|XP_002516606.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25660.1 (e_value=0.0) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54091438-54109140 transcript_region:SL2.40ch08:54091438..54109140- functional_description:"Homology to unknown gene (AHRD V1 **-- Q016Y8_OSTTA); contains Interpro domain(s) IPR007452 Protein of unknown function DUF490 "; NbS00003756g0019.1 protein AED:0.32 eAED:0.32 QI:99|1|1|1|0.66|0.5|4|353|163; (*GB) gi|351724667|ref|NP_001238601.1| (e_value=1e-82) uncharacterized protein LOC100305910 [Glycine max];; (*SWP) sp|Q641M3|TMM18_DANRE (e_value=5e-22) Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1;; (*TAIR) AT1G34350.1 (e_value=5e-77) | Symbols: | unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr1:12534585-12535927 FORWARD LENGTH=163;; (*ITAG) Solyc08g067830.2.1 (e_value=5e-104) genomic_reference:SL2.40ch08 gene_region:54073334-54077515 transcript_region:SL2.40ch08:54073334..54077515- functional_description:"Transmembrane protein 18 (AHRD V1 ***- B6TMF2_MAIZE)"; NbS00016674g0006.1 protein AED:0.01 eAED:0.01 QI:72|1|1|1|1|1|3|127|343; (*GB) gi|238769999|dbj|BAH66920.1| (e_value=0.0) metal transporter [Nicotiana tabacum];; (*SWP) sp|Q6L8G0|ZIP5_ORYSJ (e_value=3e-109) Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=4e-108) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc07g043200.1.1 (e_value=6e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54130351-54132150 transcript_region:SL2.40ch07:54130351..54132150- go_terms:GO:0000006 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006 NbS00016674g0010.1 protein AED:0.37 eAED:0.41 QI:718|0|0.66|1|1|1|3|39|84 NbS00039429g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|0.5|0.33|3|106|241; (*GB) gi|297746160|emb|CBI16216.3| (e_value=8e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G59990.1 (e_value=6e-21) | Symbols: | CCT motif family protein | chr5:24151206-24153084 REVERSE LENGTH=241;; (*ITAG) Solyc11g072850.1.1 (e_value=1e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:53121792-53123684 transcript_region:SL2.40ch11:53121792..53123684+ functional_description:"Zinc finger protein CONSTANS-LIKE 2 (AHRD V1 *--- B9MSS7_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; NbS00052945g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.75|0.33|0|4|0|492; (*GB) gi|359476165|ref|XP_002283141.2| (e_value=4e-103) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera];; (*SWP) sp|C0LGS2|Y4361_ARATH (e_value=1e-44) Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1;; (*TAIR) AT1G07390.1 (e_value=2e-75) | Symbols: AtRLP1, RLP1 | receptor like protein 1 | chr1:2269893-2274654 FORWARD LENGTH=1034;; (*ITAG) Solyc08g016210.2.1 (e_value=1e-104) genomic_reference:SL2.40ch08 gene_region:6997739-7002498 transcript_region:SL2.40ch08:6997739..7002498- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00060341g0006.1 protein AED:0.01 eAED:0.01 QI:262|1|1|1|1|1|2|204|509; (*GB) gi|14423327|gb|AAK62346.1| (e_value=0.0) elicitor-inducible cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=2e-142) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=2e-143) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g122350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64280253-64282856 transcript_region:SL2.40ch03:64280253..64282856+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00060341g0009.1 protein AED:0.13 eAED:0.13 QI:433|1|0.87|1|1|1|8|0|913; (*GB) gi|32454714|gb|AAP83138.1| (e_value=0.0) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|O24371|LOX31_SOLTU (e_value=0.0) Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1;; (*TAIR) AT1G17420.1 (e_value=0.0) | Symbols: LOX3 | lipoxygenase 3 | chr1:5977512-5981384 FORWARD LENGTH=919;; (*ITAG) Solyc03g122340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64271710-64276163 transcript_region:SL2.40ch03:64271710..64276163+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q96574_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00027089g0001.1 protein AED:0.00 eAED:0.00 QI:0|0|0|1|0|0.5|2|510|208; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=3e-137) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92980|APR3_ARATH (e_value=1e-135) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2;; (*TAIR) AT4G21990.1 (e_value=8e-137) | Symbols: APR3, PRH-26, PRH26, ATAPR3 | APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458;; (*ITAG) Solyc03g031620.2.1 (e_value=2e-140) genomic_reference:SL2.40ch03 gene_region:8376217-8379133 transcript_region:SL2.40ch03:8376217..8379133- go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR004508 Thioredoxin-independent 5'-adenylylsulphate reductase "; GO:0009973 NbS00047851g0008.1 protein AED:0.28 eAED:0.28 QI:564|1|1|1|0.66|0.5|4|263|170; (*GB) gi|224125354|ref|XP_002319565.1| (e_value=2e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32580.1 (e_value=6e-38) | Symbols: | Protein of unknown function (DUF1068) | chr2:13827849-13829135 FORWARD LENGTH=183;; (*ITAG) Solyc01g098600.2.1 (e_value=6e-85) genomic_reference:SL2.40ch01 gene_region:80834334-80837989 transcript_region:SL2.40ch01:80834334..80837989+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00047851g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0.5|2|0|968; (*GB) gi|359481300|ref|XP_002269481.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=9e-76) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT4G13920.1 (e_value=4e-109) | Symbols: AtRLP50, RLP50 | receptor like protein 50 | chr4:8043861-8046536 FORWARD LENGTH=891;; (*ITAG) Solyc01g098690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00047851g0010.1 protein AED:0.18 eAED:0.19 QI:0|0.7|0.54|1|0.6|0.54|11|0|465; (*GB) gi|258406676|gb|ACV72061.1| (e_value=0.0) glutathione synthetase [Solanum lycopersicum];; (*SWP) sp|O22494|GSHB_SOLLC (e_value=0.0) Glutathione synthetase, chloroplastic OS=Solanum lycopersicum GN=GSH2 PE=2 SV=1;; (*TAIR) AT5G27380.1 (e_value=6e-180) | Symbols: GSH2, GSHB | glutathione synthetase 2 | chr5:9668211-9670912 REVERSE LENGTH=539;; (*ITAG) Solyc01g098610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80838433-80843744 transcript_region:SL2.40ch01:80838433..80843744- go_terms:GO:0004363 functional_description:"Glutathione synthetase (AHRD V1 **** Q6F4I7_ZINEL); contains Interpro domain(s) IPR005615 Glutathione synthase, eukaryotic "; GO:0004363 NbS00004261g0007.1 protein AED:0.11 eAED:0.11 QI:59|1|1|1|1|1|3|222|319; (*GB) gi|296089043|emb|CBI38746.3| (e_value=1e-150) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46890.1 (e_value=8e-147) | Symbols: | Protein of unknown function (DUF1295) | chr2:19266879-19268134 REVERSE LENGTH=322;; (*ITAG) Solyc02g063390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30063009-30065195 transcript_region:SL2.40ch02:30063009..30065195+ go_terms:GO:0016021 functional_description:"DUF1295 domain protein (Fragment) (AHRD V1 **-- C1N4N9_MICPS); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00004261g0109.1 protein AED:0.05 eAED:0.05 QI:110|0.66|0.75|1|1|1|4|267|156 NbS00004261g0112.1 protein AED:0.31 eAED:0.34 QI:6|0.92|0.92|1|0.76|0.71|14|341|438 NbS00004261g0104.1 protein AED:0.25 eAED:0.32 QI:0|0|0|1|1|1|2|0|162 NbS00004261g0110.1 protein AED:0.82 eAED:0.89 QI:0|0|0.33|0.66|0|0|3|0|131 NbS00041967g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.33|0.5|4|0|203; (*GB) gi|351722855|ref|NP_001238282.1| (e_value=1e-34) uncharacterized protein LOC100527585 [Glycine max];; (*SWP) sp|Q9LS44|PCR4_ARATH (e_value=1e-27) Protein PLANT CADMIUM RESISTANCE 4 OS=Arabidopsis thaliana GN=PCR4 PE=3 SV=1;; (*TAIR) AT3G18460.1 (e_value=1e-28) | Symbols: | PLAC8 family protein | chr3:6333048-6333948 REVERSE LENGTH=184;; (*ITAG) Solyc08g013920.2.1 (e_value=9e-95) genomic_reference:SL2.40ch08 gene_region:3297326-3299833 transcript_region:SL2.40ch08:3297326..3299833+ functional_description:"Cell number regulator 1 (AHRD V1 **-- B6TZ45_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00012048g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g070620.2.1 (e_value=8e-161) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012048g0003.1 protein AED:0.35 eAED:0.35 QI:134|1|0.75|1|1|1|4|0|178; (*GB) gi|76573357|gb|ABA46783.1| (e_value=3e-128) unknown [Solanum tuberosum];; (*SWP) sp|Q9ATF5|RL18A_CASSA (e_value=1e-120) 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1;; (*TAIR) AT3G14600.1 (e_value=4e-120) | Symbols: | Ribosomal protein L18ae/LX family protein | chr3:4910773-4911933 FORWARD LENGTH=178;; (*ITAG) Solyc02g070650.2.1 (e_value=6e-131) genomic_reference:SL2.40ch02 gene_region:34912165-34914546 transcript_region:SL2.40ch02:34912165..34914546+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae "; GO:0003735,GO:0005515 NbS00012048g0006.1 protein AED:0.43 eAED:0.44 QI:0|1|0.5|1|1|1|2|0|98; (*GB) gi|313586517|gb|ADR71269.1| (e_value=2e-15) 60S ribosomal protein L18aA [Hevea brasiliensis];; (*TAIR) AT1G17080.1 (e_value=3e-12) | Symbols: | Ribosomal protein L18ae family | chr1:5840458-5841536 REVERSE LENGTH=154;; (*ITAG) Solyc02g070630.2.1 (e_value=4e-33) genomic_reference:SL2.40ch02 gene_region:34903834-34907890 transcript_region:SL2.40ch02:34903834..34907890+ functional_description:"60S ribosomal protein L18A (AHRD V1 *-*- B6T286_MAIZE)"; NbS00012048g0005.1 protein AED:0.86 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|61 NbS00012793g0004.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|0|0|4|0|255; (*GB) gi|225451982|ref|XP_002279883.1| (e_value=4e-65) PREDICTED: sugar carrier protein C [Vitis vinifera];; (*SWP) sp|Q9LT15|STP10_ARATH (e_value=5e-54) Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1;; (*TAIR) AT3G19940.1 (e_value=4e-55) | Symbols: | Major facilitator superfamily protein | chr3:6938211-6939975 FORWARD LENGTH=514;; (*ITAG) Solyc03g078600.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:44775407-44776871 transcript_region:SL2.40ch03:44775407..44776871+ go_terms:GO:0005358,GO:0008506 functional_description:"High-affinity glucose transporter (AHRD V1 **** HGT1_CANAL); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358,GO:0008506 NbS00030630g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.66|1|0.62|0.66|9|309|465; (*GB) gi|359475699|ref|XP_003631734.1| (e_value=3e-97) PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Vitis vinifera];; (*SWP) sp|Q9SWG3|FAR1_ARATH (e_value=9e-78) Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1;; (*TAIR) AT4G15090.1 (e_value=7e-79) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827;; (*ITAG) Solyc08g060840.1.1 (e_value=8e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:42815391-42818544 transcript_region:SL2.40ch08:42815391..42818544- go_terms:GO:0016563,GO:0003700 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0016563,GO:0003700 NbS00030630g0014.1 protein AED:0.24 eAED:0.24 QI:447|1|1|1|0.90|0.83|12|452|387; (*GB) gi|356534633|ref|XP_003535857.1| (e_value=0.0) PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Glycine max];; (*SWP) sp|Q8LG50|LPAT2_ARATH (e_value=0.0) 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=2;; (*TAIR) AT3G57650.1 (e_value=0.0) | Symbols: LPAT2 | lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389;; (*ITAG) Solyc03g063880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33993036-34010693 transcript_region:SL2.40ch03:33993036..34010693- go_terms:GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** Q2Z1Y8_PRUMU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbC26195568g0004.1 protein AED:0.33 eAED:0.33 QI:8|0.75|0.6|1|1|0.8|5|0|309; (*GB) gi|225458583|ref|XP_002284625.1| (e_value=5e-153) PREDICTED: uncharacterized protein LOC100243704 [Vitis vinifera];; (*TAIR) AT5G44250.1 (e_value=4e-111) | Symbols: | Protein of unknown function DUF829, transmembrane 53 | chr5:17823876-17825620 REVERSE LENGTH=403;; (*ITAG) Solyc04g079140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61312603-61317400 transcript_region:SL2.40ch04:61312603..61317400- functional_description:"Os11g0614900 protein (Fragment) (AHRD V1 *-*- Q0IRN0_ORYSJ); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbC26195568g0003.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|357459337|ref|XP_003599949.1| (e_value=2e-11) GRF zinc finger containing protein [Medicago truncatula];; (*ITAG) Solyc01g111490.1.1 (e_value=9e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00050323g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|1|1|3|0|412; (*GB) gi|77999255|gb|ABB16974.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P17784|ALF_ORYSJ (e_value=0.0) Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2;; (*TAIR) AT2G36460.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc10g083570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62685138-62687861 transcript_region:SL2.40ch10:62685138..62687861- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q308A5_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00004222g0004.1 protein AED:0.16 eAED:0.16 QI:44|1|1|1|1|1|2|322|146; (*GB) gi|311893225|dbj|BAJ25784.1| (e_value=2e-97) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=3e-34) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70890.1 (e_value=4e-29) | Symbols: MLP43 | MLP-like protein 43 | chr1:26725912-26726489 REVERSE LENGTH=158;; (*ITAG) Solyc04g007760.2.1 (e_value=2e-87) genomic_reference:SL2.40ch04 gene_region:1435905-1437368 transcript_region:SL2.40ch04:1435905..1437368+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00026711g0011.1 protein AED:0.12 eAED:0.12 QI:97|1|1|1|1|1|3|80|392; (*GB) gi|224128025|ref|XP_002320222.1| (e_value=6e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|O23090|BH014_ARATH (e_value=9e-74) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=7e-75) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc10g009270.2.1 (e_value=2e-135) genomic_reference:SL2.40ch10 gene_region:3259314-3261680 transcript_region:SL2.40ch10:3259314..3261680+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00026711g0001.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.25|1|1|4|0|430 NbS00009244g0016.1 protein AED:0.00 eAED:0.00 QI:680|1|1|1|1|1|2|318|386; (*GB) gi|225442367|ref|XP_002276490.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266878 [Vitis vinifera];; (*TAIR) AT5G11730.1 (e_value=2e-177) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc03g121280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63487613-63490561 transcript_region:SL2.40ch03:63487613..63490561- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00009244g0020.1 protein AED:0.37 eAED:0.37 QI:155|0.9|0.81|1|0.9|0.81|11|0|248; (*GB) gi|77999283|gb|ABB16988.1| (e_value=6e-101) RWD domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q9CQK7|RWDD1_MOUSE (e_value=2e-17) RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1;; (*TAIR) AT1G51730.1 (e_value=1e-94) | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19186812-19188638 REVERSE LENGTH=252;; (*ITAG) Solyc03g121310.2.1 (e_value=4e-92) genomic_reference:SL2.40ch03 gene_region:63499998-63504830 transcript_region:SL2.40ch03:63499998..63504830- go_terms:GO:0005515 functional_description:"RWD domain-containing protein (AHRD V1 ***- Q38HU0_SOLTU); contains Interpro domain(s) IPR006575 RWD "; GO:0005515 NbS00009244g0017.1 protein AED:0.24 eAED:0.24 QI:142|1|0.33|1|1|1|3|0|209; (*GB) gi|224120044|ref|XP_002318228.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|P18674|LECA_MACPO (e_value=2e-32) Agglutinin alpha chain OS=Maclura pomifera PE=1 SV=2;; (*TAIR) AT1G73040.1 (e_value=1e-71) | Symbols: | Mannose-binding lectin superfamily protein | chr1:27475159-27475777 REVERSE LENGTH=176;; (*ITAG) Solyc03g121300.2.1 (e_value=9e-110) genomic_reference:SL2.40ch03 gene_region:63498298-63499734 transcript_region:SL2.40ch03:63498298..63499734+ functional_description:"Myrosinase-binding protein 2 (AHRD V1 **-- D7KIN1_ARALY); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00009244g0018.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|3|0|283; (*GB) gi|255549680|ref|XP_002515891.1| (e_value=1e-28) hypothetical protein RCOM_1485780 [Ricinus communis];; (*ITAG) Solyc03g121290.2.1 (e_value=5e-89) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009244g0007.1 protein AED:0.24 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|255590973|ref|XP_002535407.1| (e_value=8e-60) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LZ15|FBL78_ARATH (e_value=2e-19) Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1;; (*TAIR) AT5G02700.1 (e_value=2e-20) | Symbols: | F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456;; (*ITAG) Solyc03g121290.2.1 (e_value=3e-124) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009244g0019.1 protein AED:0.25 eAED:0.32 QI:0|0.25|0.6|1|0.75|1|5|0|443; (*GB) gi|269980527|gb|ACZ56438.1| (e_value=0.0) IAA-amino acid hydrolase [Populus tomentosa];; (*SWP) sp|O04373|ILL4_ARATH (e_value=0.0) IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2;; (*TAIR) AT1G51760.1 (e_value=0.0) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc03g121270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63482883-63487287 transcript_region:SL2.40ch03:63482883..63487287+ go_terms:GO:0010179 functional_description:"IAA-amino acid hydrolase (AHRD V1 **** D5FTH2_POPTO); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00018149g0002.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|0|0.5|4|535|307; (*GB) gi|225427189|ref|XP_002277964.1| (e_value=1e-117) PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera];; (*TAIR) AT4G17900.1 (e_value=1e-106) | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227;; (*ITAG) Solyc06g061240.2.1 (e_value=1e-112) genomic_reference:SL2.40ch06 gene_region:35636566-35637942 transcript_region:SL2.40ch06:35636566..35637942+ go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **** D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00057519g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-21) hypothetical protein [Nicotiana tabacum]; NbS00000193g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.66|3|0|161; (*GB) gi|147798859|emb|CAN68046.1| (e_value=1e-58) hypothetical protein VITISV_017723 [Vitis vinifera];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-23) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G61230.1 (e_value=4e-45) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213;; (*ITAG) Solyc08g007940.2.1 (e_value=3e-66) genomic_reference:SL2.40ch08 gene_region:2443295-2446883 transcript_region:SL2.40ch08:2443295..2446883+ go_terms:GO:0042802 functional_description:"LIM domain protein 2b (AHRD V1 **-- B1PVT0_TOBAC); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00000193g0020.1 protein AED:0.15 eAED:0.16 QI:0|0.76|0.64|1|0.46|0.57|14|446|831; (*GB) gi|225426862|ref|XP_002276931.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265091 [Vitis vinifera];; (*TAIR) AT1G12800.1 (e_value=0.0) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:4361778-4365189 REVERSE LENGTH=767;; (*ITAG) Solyc08g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2447788-2457565 transcript_region:SL2.40ch08:2447788..2457565+ go_terms:GO:0003723 functional_description:"30S ribosomal protein S1 (AHRD V1 *-*- B9CNP3_9ACTN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00000193g0006.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|255537411|ref|XP_002509772.1| (e_value=5e-38) ccaat-binding transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9ZVL3|NFYC3_ARATH (e_value=3e-24) Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1;; (*TAIR) AT1G54830.3 (e_value=2e-25) | Symbols: NF-YC3 | nuclear factor Y, subunit C3 | chr1:20451672-20452325 FORWARD LENGTH=217;; (*ITAG) Solyc08g007960.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:2459076-2459450 transcript_region:SL2.40ch08:2459076..2459450- go_terms:GO:0046982 functional_description:"Nuclear transcription factor Y subunit C-9 (AHRD V1 ***- B6SZS1_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0046982 NbS00000193g0021.1 protein AED:0.33 eAED:0.43 QI:61|0|0|1|0.5|0.33|3|0|116 NbS00000193g0022.1 protein AED:0.22 eAED:0.23 QI:294|0.83|0.57|1|0.5|0.85|7|0|320; (*GB) gi|297742574|emb|CBI34723.3| (e_value=8e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23060.1 (e_value=1e-14) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g007920.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:2425707-2427454 transcript_region:SL2.40ch08:2425707..2427454+ functional_description:"Calmodulin binding protein (AHRD V1 **-- B6T589_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00032439g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|271; (*GB) gi|359488819|ref|XP_002272340.2| (e_value=1e-165) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*SWP) sp|Q02527|MGAT3_RAT (e_value=2e-14) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT3G27540.1 (e_value=6e-163) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr3:10205489-10206888 FORWARD LENGTH=390;; (*ITAG) Solyc02g093430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48877750-48880084 transcript_region:SL2.40ch02:48877750..48880084- go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7LPH9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00032439g0008.1 protein AED:0.51 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|225424663|ref|XP_002285541.1| (e_value=8e-36) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*TAIR) AT1G12990.1 (e_value=6e-32) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392;; (*ITAG) Solyc02g093430.2.1 (e_value=6e-49) genomic_reference:SL2.40ch02 gene_region:48877750-48880084 transcript_region:SL2.40ch02:48877750..48880084- go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7LPH9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00032439g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.37|0.11|0.66|1|1|9|0|329; (*GB) gi|356560563|ref|XP_003548560.1| (e_value=1e-66) PREDICTED: NAC domain-containing protein 8-like [Glycine max];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=3e-43) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT3G01600.1 (e_value=3e-52) | Symbols: anac044, NAC044 | NAC domain containing protein 44 | chr3:229365-231105 FORWARD LENGTH=370;; (*ITAG) Solyc02g093420.2.1 (e_value=3e-92) genomic_reference:SL2.40ch02 gene_region:48873416-48876572 transcript_region:SL2.40ch02:48873416..48876572+ go_terms:GO:0003700 functional_description:"NAC domain class transcription factor (AHRD V1 *-** D9ZJ99_MALDO); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00053360g0003.1 protein AED:0.07 eAED:0.12 QI:0|1|0|1|1|1|3|0|432; (*GB) gi|356523255|ref|XP_003530256.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100799977 [Glycine max];; (*TAIR) AT4G37580.1 (e_value=8e-125) | Symbols: HLS1, COP3, UNS2 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:17658932-17660564 FORWARD LENGTH=403;; (*ITAG) Solyc03g116860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60171574-60173502 transcript_region:SL2.40ch03:60171574..60173502- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q7EYF5_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00032521g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.94|1|1|1|18|317|637; (*GB) gi|225457674|ref|XP_002276269.1| (e_value=0.0) PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Vitis vinifera];; (*SWP) sp|P21342|PFPA_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G76550.1 (e_value=0.0) | Symbols: | Phosphofructokinase family protein | chr1:28722900-28726929 REVERSE LENGTH=617;; (*ITAG) Solyc12g095760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63231944-63238575 transcript_region:SL2.40ch12:63231944..63238575- go_terms:GO:0005576,GO:0005945 functional_description:"Diphosphate--fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- C8PT93_9SPIO); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005576,GO:0005945 NbS00045338g0006.1 protein AED:0.16 eAED:0.16 QI:146|0.75|0.66|1|0.75|0.88|9|0|631; (*GB) gi|297742520|emb|CBI34669.3| (e_value=1e-151) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q75AH6|AGC1_ASHGO (e_value=1e-25) Mitochondrial aspartate-glutamate transporter AGC1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=AGC1 PE=3 SV=2;; (*TAIR) AT4G11440.1 (e_value=3e-122) | Symbols: | Mitochondrial substrate carrier family protein | chr4:6955850-6958553 FORWARD LENGTH=628;; (*ITAG) Solyc08g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61351618-61357050 transcript_region:SL2.40ch08:61351618..61357050- go_terms:GO:0016020 functional_description:"Mitochondrial carrier family (AHRD V1 *-*- C1MZ50_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00047149g0010.1 protein AED:0.37 eAED:0.39 QI:181|0|0.5|1|0|0.5|2|0|95; (*GB) gi|320148074|emb|CBJ20736.1| (e_value=6e-38) hypothetical protein [Beta vulgaris subsp. maritima];; (*SWP) sp|P93286|CCMF_ARATH (e_value=1e-34) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=7e-37) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=4e-39) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00047149g0009.1 protein AED:0.38 eAED:0.42 QI:0|0|0|0.33|0.5|0.66|3|0|361; (*GB) gi|57013999|ref|YP_173470.1| (e_value=2e-103) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=1e-74) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=3e-79) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=5e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00005996g0006.1 protein AED:0.21 eAED:0.21 QI:107|0.66|1|1|0.66|0.75|4|352|96; (*GB) gi|297736505|emb|CBI25376.3| (e_value=5e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49206|RS261_ARATH (e_value=2e-23) 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2;; (*TAIR) AT2G40590.1 (e_value=1e-24) | Symbols: | Ribosomal protein S26e family protein | chr2:16945215-16946345 REVERSE LENGTH=131;; (*ITAG) Solyc04g008810.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:2432009-2434241 transcript_region:SL2.40ch04:2432009..2434241+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00005996g0007.1 protein AED:0.08 eAED:0.33 QI:285|0.5|0.66|1|0|0|3|0|115 NbS00059113g0005.1 protein AED:0.15 eAED:0.15 QI:241|0.9|0.81|1|0.9|1|11|0|1273; (*GB) gi|162280537|gb|ABX82929.1| (e_value=0.0) LO4 [Solanum pennellii];; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=0.0) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=0.0) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc02g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44715333-44723038 transcript_region:SL2.40ch02:44715333..44723038- go_terms:GO:0010329,GO:0008559 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0010329,GO:0008559 NbS00040254g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.25|1|0.33|0|4|0|618; (*GB) gi|225461963|ref|XP_002266700.1| (e_value=0.0) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc07g065710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00036220g0004.1 protein AED:0.54 eAED:0.69 QI:0|0|0|0.25|0.57|0.5|8|0|328; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-45) PREDICTED: uncharacterized protein LOC100795315 [Glycine max];; (*ITAG) Solyc07g018180.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:9642772-9646610 transcript_region:SL2.40ch07:9642772..9646610+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00005083g0008.1 protein AED:0.02 eAED:0.02 QI:191|1|1|1|0.5|0.4|5|284|433; (*GB) gi|225436703|ref|XP_002263976.1| (e_value=1e-174) PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera];; (*SWP) sp|Q640T2|WIPI3_XENTR (e_value=3e-81) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G62770.1 (e_value=4e-166) | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23218858-23221110 REVERSE LENGTH=425;; (*ITAG) Solyc08g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:775557-780071 transcript_region:SL2.40ch08:775557..780071+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00005083g0009.1 protein AED:0.26 eAED:0.26 QI:205|0.8|0.83|1|1|1|6|168|483; (*GB) gi|257831439|gb|ACV71020.1| (e_value=0.0) UPA21 [Capsicum annuum];; (*TAIR) AT4G26000.1 (e_value=7e-125) | Symbols: PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH=495;; (*ITAG) Solyc07g008490.2.1 (e_value=7e-131) genomic_reference:SL2.40ch07 gene_region:3392921-3399097 transcript_region:SL2.40ch07:3392921..3399097- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6TJ76_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00006579g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|0.33|0.25|4|28|223; (*GB) gi|297737587|emb|CBI26788.3| (e_value=7e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q67ZF6|ACFR3_ARATH (e_value=1e-61) Probable transmembrane ascorbate ferrireductase 3 OS=Arabidopsis thaliana GN=CYB561C PE=2 SV=1;; (*TAIR) AT1G14730.1 (e_value=9e-63) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr1:5073244-5074568 FORWARD LENGTH=224;; (*ITAG) Solyc01g005150.2.1 (e_value=5e-109) genomic_reference:SL2.40ch01 gene_region:131976-134318 transcript_region:SL2.40ch01:131976..134318- go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00030971g0013.1 protein AED:0.22 eAED:0.28 QI:0|0.66|0.5|1|0.66|0.75|4|123|170; (*GB) gi|359475326|ref|XP_003631656.1| (e_value=3e-86) PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera];; (*SWP) sp|Q87SU3|RL27_VIBPA (e_value=6e-32) 50S ribosomal protein L27 OS=Vibrio parahaemolyticus GN=rpmA PE=3 SV=1;; (*TAIR) AT5G15220.1 (e_value=2e-66) | Symbols: | Ribosomal protein L27 family protein | chr5:4941466-4942133 REVERSE LENGTH=154;; (*ITAG) Solyc11g071320.1.1 (e_value=8e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51928767-51929633 transcript_region:SL2.40ch11:51928767..51929633+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- B6T4C5_MAIZE); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005840 NbS00030971g0004.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|0.5|1|1|4|427|207; (*GB) gi|147812172|emb|CAN61516.1| (e_value=8e-91) hypothetical protein VITISV_033965 [Vitis vinifera];; (*TAIR) AT3G24570.1 (e_value=1e-83) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr3:8966675-8968530 REVERSE LENGTH=235;; (*ITAG) Solyc11g071330.1.1 (e_value=2e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51930686-51936191 transcript_region:SL2.40ch11:51930686..51936191+ go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B6SUV8_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00030971g0007.1 protein AED:0.47 eAED:0.68 QI:179|0|0.5|1|1|1|2|0|143; (*GB) gi|356552628|ref|XP_003544666.1| (e_value=7e-23) PREDICTED: PXMP2/4 family protein 2-like isoform 2 [Glycine max];; (*TAIR) AT3G24570.2 (e_value=6e-20) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr3:8966675-8968530 REVERSE LENGTH=222;; (*ITAG) Solyc11g071330.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51930686-51936191 transcript_region:SL2.40ch11:51930686..51936191+ go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B6SUV8_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00011167g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|249; (*ITAG) Solyc01g105770.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:85579929-85581435 transcript_region:SL2.40ch01:85579929..85581435- functional_description:"Unknown Protein (AHRD V1)"; NbS00011167g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|705; (*GB) gi|356528019|ref|XP_003532603.1| (e_value=2e-45) PREDICTED: uncharacterized protein LOC100788733 [Glycine max];; (*TAIR) AT5G64360.4 (e_value=2e-42) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=464;; (*ITAG) Solyc01g105780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85586719-85589342 transcript_region:SL2.40ch01:85586719..85589342- go_terms:GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00011167g0012.1 protein AED:0.13 eAED:0.14 QI:9|0.75|0.6|1|1|1|5|0|375; (*GB) gi|359477214|ref|XP_002273031.2| (e_value=7e-171) PREDICTED: GDSL esterase/lipase At4g16230-like [Vitis vinifera];; (*SWP) sp|O23470|GDL64_ARATH (e_value=2e-150) GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2;; (*TAIR) AT2G23540.1 (e_value=3e-111) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:10024366-10026058 FORWARD LENGTH=387;; (*ITAG) Solyc01g059840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:61506373-61507764 transcript_region:SL2.40ch01:61506373..61507764- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At4g16230 (AHRD V1 **** GDL64_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00011167g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|241; (*ITAG) Solyc01g105760.1.1 (e_value=8e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85568090-85568347 transcript_region:SL2.40ch01:85568090..85568347- functional_description:"Unknown Protein (AHRD V1)"; NbS00011167g0005.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|378; (*GB) gi|147790759|emb|CAN65939.1| (e_value=1e-11) hypothetical protein VITISV_008968 [Vitis vinifera];; (*ITAG) Solyc05g013490.2.1 (e_value=8e-28) genomic_reference:SL2.40ch05 gene_region:6701173-6716534 transcript_region:SL2.40ch05:6701173..6716534+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039514g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|224142337|ref|XP_002324515.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMU0|FCL2_ARATH (e_value=0.0) Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1;; (*TAIR) AT1G17890.1 (e_value=0.0) | Symbols: GER2 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:6154478-6155596 REVERSE LENGTH=328;; (*ITAG) Solyc07g006070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:911735-912676 transcript_region:SL2.40ch07:911735..912676+ go_terms:GO:0042356 functional_description:"GDP-fucose synthetase NAD dependent epimerase/dehydratase (AHRD V1 **-* Q30XA1_DESDG); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0042356 NbS00050152g0005.1 protein AED:0.15 eAED:0.15 QI:356|0.81|0.82|0.94|0.68|0.64|17|380|583; (*GB) gi|255561365|ref|XP_002521693.1| (e_value=0.0) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SVE7|MATE3_ARATH (e_value=2e-175) MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2;; (*TAIR) AT4G38380.1 (e_value=1e-176) | Symbols: | MATE efflux family protein | chr4:17971855-17974787 REVERSE LENGTH=560;; (*ITAG) Solyc02g061760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27854434-27861277 transcript_region:SL2.40ch02:27854434..27861277- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7LLI9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00050152g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|1|0.66|0.5|4|0|577; (*GB) gi|255561377|ref|XP_002521699.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc03g032210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8995213-8998256 transcript_region:SL2.40ch03:8995213..8998256+ go_terms:GO:0018858,GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858,GO:0016208 NbS00039462g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|607; (*GB) gi|359481393|ref|XP_002276762.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like [Vitis vinifera];; (*SWP) sp|Q8S8P6|PP180_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1;; (*TAIR) AT2G32630.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=624;; (*ITAG) Solyc10g084090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63078128-63084428 transcript_region:SL2.40ch10:63078128..63084428+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LF08_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005830g0101.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|163 NbS00005830g0209.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|0.5|0.33|3|362|229 NbS00005830g0211.1 protein AED:0.34 eAED:0.51 QI:0|0|0|1|0|0.33|3|0|139 NbS00005830g0210.1 protein AED:0.42 eAED:0.49 QI:0|0|0|1|0|0|3|0|61 NbS00008643g0005.1 protein AED:0.25 eAED:0.28 QI:0|0|0|0.75|0.33|0.75|4|0|145 NbS00008643g0003.1 protein AED:0.33 eAED:0.33 QI:121|1|1|1|1|1|2|323|182; (*GB) gi|62856979|gb|AAY16440.1| (e_value=4e-58) squamosa promoter binding-like protein [Betula platyphylla];; (*SWP) sp|Q38741|SBP1_ANTMA (e_value=6e-41) Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1;; (*TAIR) AT1G53160.1 (e_value=8e-40) | Symbols: SPL4 | squamosa promoter binding protein-like 4 | chr1:19806478-19807080 FORWARD LENGTH=174;; (*ITAG) Solyc07g053810.2.1 (e_value=6e-51) genomic_reference:SL2.40ch07 gene_region:59554791-59557127 transcript_region:SL2.40ch07:59554791..59557127- go_terms:GO:0005634 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00041327g0001.1 protein AED:0.00 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|296; (*GB) gi|359482158|ref|XP_003632719.1| (e_value=6e-87) PREDICTED: uncharacterized protein LOC100267595 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=2e-12) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT2G41940.1 (e_value=6e-45) | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507556-17508329 FORWARD LENGTH=257;; (*ITAG) Solyc03g058160.2.1 (e_value=2e-64) genomic_reference:SL2.40ch03 gene_region:20451688-20456967 transcript_region:SL2.40ch03:20451688..20456967+ go_terms:GO:0003700 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *-** D8RBD0_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00061963g0005.1 protein AED:0.09 eAED:0.09 QI:157|1|1|1|0.66|0.75|4|455|413; (*GB) gi|359484345|ref|XP_002280595.2| (e_value=2e-118) PREDICTED: probable glycosyltransferase At5g03795-like [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=7e-52) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G19670.1 (e_value=8e-100) | Symbols: | Exostosin family protein | chr5:6647025-6649358 FORWARD LENGTH=610;; (*ITAG) Solyc06g064490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36544791-36548412 transcript_region:SL2.40ch06:36544791..36548412- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7LZA5_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00002258g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.75|1|0.71|0.75|8|194|436; (*GB) gi|297738286|emb|CBI27487.3| (e_value=3e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q56XX3|Y2215_ARATH (e_value=6e-124) Uncharacterized protein At2g02148 OS=Arabidopsis thaliana GN=At2g02148 PE=2 SV=1;; (*TAIR) AT2G02148.1 (e_value=5e-125) | Symbols: | unknown protein. | chr2:547389-549316 REVERSE LENGTH=432;; (*ITAG) Solyc04g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2173271-2179828 transcript_region:SL2.40ch04:2173271..2179828- go_terms:GO:0008152 functional_description:"Unknown Protein (AHRD V1)"; GO:0008152 NbS00005591g0003.1 protein AED:0.13 eAED:0.15 QI:0|1|0.66|1|0|0.33|3|720|886; (*GB) gi|359476104|ref|XP_003631789.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g54980, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SV46|PP282_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1;; (*TAIR) AT3G54980.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:20370293-20372848 FORWARD LENGTH=851;; (*ITAG) Solyc08g067060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53188616-53191168 transcript_region:SL2.40ch08:53188616..53191168- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005591g0014.1 protein AED:0.18 eAED:0.18 QI:276|1|1|1|0.71|0.75|8|132|247; (*GB) gi|359478208|ref|XP_003632086.1| (e_value=7e-119) PREDICTED: syntaxin-61-like [Vitis vinifera];; (*SWP) sp|Q946Y7|SYP61_ARATH (e_value=5e-101) Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1;; (*TAIR) AT1G28490.1 (e_value=4e-102) | Symbols: SYP61, ATSYP61, OSM1 | syntaxin of plants 61 | chr1:10016433-10017842 FORWARD LENGTH=245;; (*ITAG) Solyc12g089150.1.1 (e_value=7e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62702377-62703497 transcript_region:SL2.40ch12:62702377..62703497- functional_description:"Syntaxin-like protein (AHRD V1 *-*- B0E004_LACBS); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; NbS00005591g0016.1 protein AED:0.12 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|466; (*GB) gi|255548990|ref|XP_002515551.1| (e_value=0.0) ammonium transporter, putative [Ricinus communis];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=7e-152) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=7e-143) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc08g067080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:53203915-53206113 transcript_region:SL2.40ch08:53203915..53206113+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00005591g0019.1 protein AED:0.30 eAED:0.30 QI:0|0.83|0.84|1|0.83|0.84|13|0|806; (*GB) gi|359475799|ref|XP_002285000.2| (e_value=3e-83) PREDICTED: uncharacterized protein LOC100264514 [Vitis vinifera];; (*SWP) sp|P0C1I8|CYP6_RHIO9 (e_value=1e-47) Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp6 PE=3 SV=1;; (*TAIR) AT4G32420.3 (e_value=4e-75) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15647550-15652103 REVERSE LENGTH=837;; (*ITAG) Solyc08g067090.2.1 (e_value=6e-107) genomic_reference:SL2.40ch08 gene_region:53210448-53219760 transcript_region:SL2.40ch08:53210448..53219760+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B9H8E5_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00005591g0022.1 protein AED:0.35 eAED:0.35 QI:27|0.85|0.75|1|0.57|0.75|8|0|350; (*GB) gi|359476106|ref|XP_002282454.2| (e_value=6e-161) PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Vitis vinifera];; (*SWP) sp|O14717|TRDMT_HUMAN (e_value=3e-67) tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1;; (*TAIR) AT5G25480.1 (e_value=3e-153) | Symbols: DNMT2, AtDNMT2 | DNA methyltransferase-2 | chr5:8870069-8872199 REVERSE LENGTH=383;; (*ITAG) Solyc08g067070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53192484-53203494 transcript_region:SL2.40ch08:53192484..53203494+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** Q177E1_AEDAE); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00005591g0020.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0.5|2|0|72; (*GB) gi|232782268|gb|ACQ91094.1| (e_value=5e-23) high affinity ammonium transporter [Lotus japonicus];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=1e-14) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=2e-14) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc08g067080.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:53203915-53206113 transcript_region:SL2.40ch08:53203915..53206113+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00042457g0004.1 protein AED:0.24 eAED:0.24 QI:7|0.92|0.86|1|1|1|15|0|696; (*GB) gi|297734403|emb|CBI15650.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G02890.2 (e_value=2e-123) | Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1218;; (*ITAG) Solyc03g110900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55671361-55690483 transcript_region:SL2.40ch03:55671361..55690483- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_DANRE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00002688g0005.1 protein AED:0.10 eAED:0.10 QI:362|0.90|0.83|1|1|1|12|270|750; (*GB) gi|225442450|ref|XP_002277939.1| (e_value=0.0) PREDICTED: poly(A) polymerase-like [Vitis vinifera];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=1e-144) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT4G32850.6 (e_value=0.0) | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15850134-15854351 FORWARD LENGTH=738;; (*ITAG) Solyc06g066470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38113428-38118914 transcript_region:SL2.40ch06:38113428..38118914- go_terms:GO:0005515,GO:0004652 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR014492 Poly(A) polymerase "; GO:0005515,GO:0004652 NbS00031679g0008.1 protein AED:0.10 eAED:0.10 QI:242|0.7|0.72|0.90|0.5|0.45|11|347|525; (*GB) gi|225438007|ref|XP_002270511.1| (e_value=4e-112) PREDICTED: uncharacterized protein LOC100244545 [Vitis vinifera];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-25) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=5e-74) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc05g055940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64521576-64525231 transcript_region:SL2.40ch05:64521576..64525231+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00031679g0009.1 protein AED:0.13 eAED:0.14 QI:0|0.25|0.4|0.8|1|1|5|0|405; (*GB) gi|147809623|emb|CAN66644.1| (e_value=6e-101) hypothetical protein VITISV_018782 [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-40) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=2e-54) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc04g050050.2.1 (e_value=8e-114) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00034145g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.33|1|0.6|0.66|6|0|1253; (*GB) gi|356497399|ref|XP_003517548.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D3-like [Glycine max];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0.0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=0.0) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc08g076320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57452825-57457247 transcript_region:SL2.40ch08:57452825..57457247- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbC26121466g0003.1 protein AED:0.21 eAED:0.21 QI:71|0.87|0.77|1|0.87|0.88|9|440|428; (*GB) gi|75291596|sp|Q6Q8A5.1|HXK2_TOBAC (e_value=0.0) RecName: Full=Hexokinase-2, chloroplastic; AltName: Full=NtHxK2; Flags: Precursor;; (*SWP) sp|Q6Q8A5|HXK2_TOBAC (e_value=0.0) Hexokinase-2, chloroplastic OS=Nicotiana tabacum GN=HXK2 PE=2 SV=1;; (*TAIR) AT1G47840.1 (e_value=0.0) | Symbols: HXK3 | hexokinase 3 | chr1:17616243-17618859 REVERSE LENGTH=493;; (*ITAG) Solyc04g081400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62985915-62990125 transcript_region:SL2.40ch04:62985915..62990125+ go_terms:GO:0004340 functional_description:"Hexokinase 1 (AHRD V1 ***- B6V3C0_CUCME); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbC24604416g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|98; (*GB) gi|255552944|ref|XP_002517515.1| (e_value=3e-40) vacuolar protein sorting-associated protein, putative [Ricinus communis];; (*TAIR) AT4G17140.1 (e_value=6e-40) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4216;; (*ITAG) Solyc08g077490.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58609379-58620173 transcript_region:SL2.40ch08:58609379..58620173+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 ***- C1GW28_PARBA)"; NbS00014957g0001.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=2e-34) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|Q8LQJ8|FTSH5_ORYSJ (e_value=2e-35) ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1;; (*TAIR) AT2G26140.1 (e_value=7e-36) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc08g063050.2.1 (e_value=6e-38) genomic_reference:SL2.40ch08 gene_region:49804067-49811631 transcript_region:SL2.40ch08:49804067..49811631+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00035709g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|296090345|emb|CBI40164.3| (e_value=3e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=5e-19) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=4e-20) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc10g082010.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62245142-62246218 transcript_region:SL2.40ch10:62245142..62246218- functional_description:"F-box protein (Fragment) (AHRD V1 *-*- B0Z665_9ROSA); contains Interpro domain(s) IPR006527 F-box associated "; NbS00035651g0001.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0|1|1|1|4|0|1043; (*GB) gi|359480096|ref|XP_003632398.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Vitis vinifera];; (*SWP) sp|C0LGV1|RCH1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1;; (*TAIR) AT5G48940.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:19839785-19843744 FORWARD LENGTH=1135;; (*ITAG) Solyc09g061940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56361527-56365006 transcript_region:SL2.40ch09:56361527..56365006+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00035651g0004.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|297744289|emb|CBI37259.3| (e_value=3e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=5e-19) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=4e-20) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc09g061940.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56361527-56365006 transcript_region:SL2.40ch09:56361527..56365006+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00031243g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.5|1|0.2|0.33|6|0|314; (*GB) gi|255575124|ref|XP_002528467.1| (e_value=7e-85) Auxin-induced protein 5NG4, putative [Ricinus communis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=6e-27) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT2G39510.1 (e_value=2e-83) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr2:16491358-16493085 REVERSE LENGTH=374;; (*ITAG) Solyc04g011340.2.1 (e_value=1e-150) genomic_reference:SL2.40ch04 gene_region:3817607-3821614 transcript_region:SL2.40ch04:3817607..3821614- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00007133g0008.1 protein AED:0.37 eAED:0.42 QI:248|1|0.66|1|1|1|3|0|164; (*GB) gi|224087407|ref|XP_002308154.1| (e_value=6e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LCY2|ISAM2_ARATH (e_value=8e-49) Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2;; (*TAIR) AT5G03905.1 (e_value=6e-50) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1052728-1054041 FORWARD LENGTH=158;; (*ITAG) Solyc01g100410.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:82205026-82210979 transcript_region:SL2.40ch01:82205026..82210979+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein ErpA (AHRD V1 ***- C8Q1G7_9GAMM); contains Interpro domain(s) IPR016092 FeS cluster insertion "; GO:0016226 NbS00007133g0010.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|0|0|2|0|77 NbS00007133g0101.1 protein AED:0.21 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|120 NbS00007133g0106.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|97 NbS00039241g0001.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc06g006020.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1036961-1040075 transcript_region:SL2.40ch06:1036961..1040075- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00039241g0004.1 protein AED:0.43 eAED:0.73 QI:63|0|0|1|0|0|3|132|65; (*ITAG) Solyc06g006020.1.1 (e_value=4e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1036961-1040075 transcript_region:SL2.40ch06:1036961..1040075- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00056529g0006.1 protein AED:0.00 eAED:0.00 QI:70|1|1|1|0.33|0.25|4|109|254; (*GB) gi|296087255|emb|CBI33629.3| (e_value=9e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TQV6|MSRA_METAC (e_value=2e-31) Peptide methionine sulfoxide reductase MsrA OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=msrA PE=3 SV=1;; (*TAIR) AT4G25130.1 (e_value=2e-30) | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898802-12899998 REVERSE LENGTH=258;; (*ITAG) Solyc02g063250.2.1 (e_value=3e-130) genomic_reference:SL2.40ch02 gene_region:29882837-29885330 transcript_region:SL2.40ch02:29882837..29885330+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 *-** D7E9W5_METEZ); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00056529g0007.1 protein AED:0.15 eAED:0.15 QI:168|1|1|1|0.5|0.66|3|182|271; (*GB) gi|4426627|gb|AAD20458.1| (e_value=0.0) sterol-C5(6)-desaturase homolog [Nicotiana tabacum];; (*SWP) sp|Q9ZT29|SC5D_TOBAC (e_value=0.0) Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G02580.1 (e_value=4e-157) | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:547048-548615 FORWARD LENGTH=281;; (*ITAG) Solyc02g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29878782-29881548 transcript_region:SL2.40ch02:29878782..29881548+ go_terms:GO:0000248 functional_description:"Sterol C-5 desaturase (AHRD V1 **** D7FW86_ECTSI); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000248 NbS00036997g0008.1 protein AED:0.04 eAED:0.04 QI:33|1|0.75|1|1|1|4|0|405; (*GB) gi|21105736|gb|AAM34767.1|AF509867_1 (e_value=0.0) nam-like protein 4 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-91) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10480.2 (e_value=2e-107) | Symbols: ANAC050, NAC050 | NAC domain containing protein 50 | chr3:3264410-3266781 FORWARD LENGTH=446;; (*ITAG) Solyc11g008010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2211124-2215951 transcript_region:SL2.40ch11:2211124..2215951- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00016677g0007.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|113; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-36) hypothetical protein [Nicotiana tabacum]; NbS00016677g0008.1 protein AED:0.19 eAED:0.19 QI:236|1|0.66|1|0|0.33|3|0|523; (*GB) gi|317106706|dbj|BAJ53206.1| (e_value=0.0) JHL06B08.8 [Jatropha curcas];; (*TAIR) AT2G41640.1 (e_value=0.0) | Symbols: | Glycosyltransferase family 61 protein | chr2:17360654-17362391 FORWARD LENGTH=500;; (*ITAG) Solyc10g080010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60755664-60758004 transcript_region:SL2.40ch10:60755664..60758004+ go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ6_MEDTR); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757 NbS00035733g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|532; (*GB) gi|225437286|ref|XP_002266871.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=8e-95) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=6e-96) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc07g005740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:600267-601697 transcript_region:SL2.40ch07:600267..601697+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00035733g0005.1 protein AED:0.27 eAED:0.27 QI:244|1|1|1|1|1|2|172|307; (*GB) gi|225445832|ref|XP_002277519.1| (e_value=7e-130) PREDICTED: F-box protein SKIP1 [Vitis vinifera];; (*SWP) sp|Q9FDX1|SKIP1_ARATH (e_value=3e-105) F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1;; (*TAIR) AT5G57900.1 (e_value=3e-106) | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5:23449916-23450915 REVERSE LENGTH=300;; (*ITAG) Solyc07g005750.2.1 (e_value=2e-157) genomic_reference:SL2.40ch07 gene_region:602113-605194 transcript_region:SL2.40ch07:602113..605194+ go_terms:GO:0005515 functional_description:"F-box/LRR-repeat protein 17 (AHRD V1 ***- FXL17_HUMAN); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00036033g0001.1 protein AED:0.73 eAED:0.73 QI:21|0|0|0.33|0|0|3|0|90 NbS00017523g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|357528936|gb|AET80688.1| (e_value=8e-153) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=3e-72) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-34) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc11g071470.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52013683-52015014 transcript_region:SL2.40ch11:52013683..52015014+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00024919g0015.1 protein AED:0.41 eAED:0.42 QI:247|0.33|0.5|1|0.33|0.75|4|226|113 NbS00024919g0002.1 protein AED:0.17 eAED:0.22 QI:0|0.33|0|1|1|1|7|0|793; (*GB) gi|224142043|ref|XP_002324368.1| (e_value=0.0) glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa];; (*SWP) sp|Q8LGN0|GLR27_ARATH (e_value=0.0) Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3;; (*TAIR) AT2G29120.1 (e_value=0.0) | Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952;; (*ITAG) Solyc08g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00024919g0014.1 protein AED:0.29 eAED:0.29 QI:275|1|0.85|1|0.83|1|7|0|774; (*GB) gi|225443280|ref|XP_002273667.1| (e_value=0.0) PREDICTED: exocyst complex component 8 [Vitis vinifera];; (*SWP) sp|Q54VZ8|EXOC8_DICDI (e_value=3e-16) Exocyst complex component 8 OS=Dictyostelium discoideum GN=exoc8 PE=3 SV=2;; (*TAIR) AT5G49830.1 (e_value=0.0) | Symbols: EXO84B | exocyst complex component 84B | chr5:20250803-20254766 REVERSE LENGTH=752;; (*ITAG) Solyc03g123870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64609111-64617320 transcript_region:SL2.40ch03:64609111..64617320- functional_description:"Exocyst complex component 8 (AHRD V1 *-*- B5X3R0_SALSA); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00024919g0009.1 protein AED:0.51 eAED:0.69 QI:0|0|0|0.75|1|1|4|0|111; (*GB) gi|255552368|ref|XP_002517228.1| (e_value=3e-36) ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q06450|ATP5E_IPOBA (e_value=2e-36) ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2;; (*TAIR) AT1G51650.1 (e_value=5e-36) | Symbols: | ATP synthase epsilon chain, mitochondrial | chr1:19152680-19153641 FORWARD LENGTH=70;; (*ITAG) Solyc12g055760.1.1 (e_value=1e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47102472-47105411 transcript_region:SL2.40ch12:47102472..47105411- go_terms:GO:0000275 functional_description:"ATP synthase subunit epsilon mitochondrial (AHRD V1 ***- D3PJA4_9MAXI); contains Interpro domain(s) IPR006721 ATPase, F1 complex, epsilon subunit, mitochondrial "; GO:0000275 NbS00052917g0003.1 protein AED:0.09 eAED:0.09 QI:92|1|0.5|1|1|1|2|0|250; (*GB) gi|350538421|ref|NP_001234086.1| (e_value=8e-90) uncharacterized protein LOC543814 [Solanum lycopersicum];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=3e-91) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=6e-71) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc10g084960.1.1 (e_value=4e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63636357-63637715 transcript_region:SL2.40ch10:63636357..63637715+ functional_description:"Glutathione S-transferase-like protein (AHRD V1 ***- A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00020788g0010.1 protein AED:0.26 eAED:0.26 QI:74|0.77|0.8|1|0.77|0.9|10|708|324; (*GB) gi|2653879|gb|AAB87670.1| (e_value=0.0) adenyl cyclase [Nicotiana tabacum];; (*TAIR) AT4G15640.1 (e_value=2e-122) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8919245-8921852 REVERSE LENGTH=390;; (*ITAG) Solyc07g041930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00020788g0012.1 protein AED:0.10 eAED:0.11 QI:0|1|0.6|1|1|1|5|0|460; (*GB) gi|53857147|gb|AAP03880.2| (e_value=0.0) Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=7e-154) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G05940.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc07g041940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51996488-51998745 transcript_region:SL2.40ch07:51996488..51998745+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020788g0011.1 protein AED:0.23 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|0|67; (*GB) gi|225444714|ref|XP_002278332.1| (e_value=2e-17) PREDICTED: RING-box protein 1a [Vitis vinifera];; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=1e-16) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.2 (e_value=1e-17) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=142;; (*ITAG) Solyc12g009120.1.1 (e_value=2e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00028208g0003.1 protein AED:0.17 eAED:0.17 QI:32|1|1|1|1|1|6|288|562; (*GB) gi|356496745|ref|XP_003517226.1| (e_value=0.0) PREDICTED: laccase-11-like [Glycine max];; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=0.0) Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1;; (*TAIR) AT5G03260.1 (e_value=0.0) | Symbols: LAC11 | laccase 11 | chr5:777198-779338 REVERSE LENGTH=557;; (*ITAG) Solyc02g085110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42674495-42676816 transcript_region:SL2.40ch02:42674495..42676816- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00007678g0004.1 protein AED:0.10 eAED:0.11 QI:0|1|0.8|1|1|1|5|0|579; (*GB) gi|255550217|ref|XP_002516159.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q86UW6|N4BP2_HUMAN (e_value=7e-14) NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2;; (*TAIR) AT2G26280.1 (e_value=0.0) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbS00039518g0001.1 protein AED:0.22 eAED:0.22 QI:336|0.92|1|1|0.57|0.46|15|278|427; (*GB) gi|118486381|gb|ABK95031.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|P02982|TCR1_ECOLX (e_value=1e-12) Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2;; (*TAIR) AT2G16980.2 (e_value=2e-139) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461;; (*ITAG) Solyc04g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63403203-63408413 transcript_region:SL2.40ch04:63403203..63408413+ go_terms:GO:0008493 functional_description:"Transporter major facilitator superfamily and tetracycline resistance protein (Fragment) (AHRD V1 **-* B7FRJ1_PHATR); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00054892g0003.1 protein AED:0.24 eAED:0.24 QI:133|1|0.8|1|0.75|0.6|5|0|211; (*GB) gi|225462089|ref|XP_002277017.1| (e_value=6e-81) PREDICTED: transcription initiation factor TFIID subunit 11 [Vitis vinifera];; (*SWP) sp|Q54XM9|TAF11_DICDI (e_value=2e-27) Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum GN=taf11 PE=3 SV=1;; (*TAIR) AT4G20280.1 (e_value=3e-65) | Symbols: TAF11 | TBP-associated factor 11 | chr4:10953792-10954664 FORWARD LENGTH=210;; (*ITAG) Solyc05g018120.1.1 (e_value=4e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20042569-20043201 transcript_region:SL2.40ch05:20042569..20043201- go_terms:GO:0016986 functional_description:"Transcription initiation factor TFIID subunit 11 (AHRD V1 **** B6UGD0_MAIZE); contains Interpro domain(s) IPR006809 TAFII28-like protein "; GO:0016986 NbS00014784g0013.1 protein AED:0.12 eAED:0.12 QI:54|1|1|1|1|0.66|3|0|141; (*GB) gi|356525405|ref|XP_003531315.1| (e_value=5e-67) PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Glycine max];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=3e-31) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT4G05430.1 (e_value=2e-48) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr4:2753582-2754324 FORWARD LENGTH=143;; (*ITAG) Solyc04g058080.2.1 (e_value=1e-90) genomic_reference:SL2.40ch04 gene_region:54344892-54347245 transcript_region:SL2.40ch04:54344892..54347245- functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 *-*- B6THD2_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00014784g0012.1 protein AED:0.24 eAED:0.24 QI:0|1|0.87|1|1|0.87|8|377|347; (*GB) gi|37983566|gb|AAR06290.1| (e_value=0.0) 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum];; (*SWP) sp|Q05728|PUR5_ARATH (e_value=0.0) Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR5 PE=2 SV=2;; (*TAIR) AT3G55010.2 (e_value=0.0) | Symbols: ATPURM, PUR5 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | chr3:20386818-20388549 FORWARD LENGTH=389;; (*ITAG) Solyc04g058090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54348345-54353968 transcript_region:SL2.40ch04:54348345..54353968- go_terms:GO:0008716 functional_description:"Phosphoribosylformylglycinamidine cyclo-ligase (AHRD V1 **** Q6T7F2_SOLTU); contains Interpro domain(s) IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase "; GO:0008716 NbS00014784g0014.1 protein AED:0.10 eAED:0.13 QI:0|1|0.82|1|0.93|1|17|280|741; (*GB) gi|122172235|sp|Q0GZS3.1|USP_CUCME (e_value=0.0) RecName: Full=UDP-sugar pyrophospharylase; AltName: Full=UDP-galactose/glucose pyrophosphorylase; Short=UGGPase;; (*SWP) sp|Q0GZS3|USP_CUCME (e_value=0.0) UDP-sugar pyrophospharylase OS=Cucumis melo GN=USP PE=1 SV=1;; (*TAIR) AT5G52560.1 (e_value=0.0) | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase | chr5:21331230-21334573 FORWARD LENGTH=614;; (*ITAG) Solyc04g058070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54328964-54342003 transcript_region:SL2.40ch04:54328964..54342003+ go_terms:GO:0008152 functional_description:"UDP-N-acetylglucosamine-pyrophosphorylase (AHRD V1 ***- A8HP64_CHLRE); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0008152 NbC24507900g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|237664617|gb|ACR09747.1| (e_value=2e-48) DIV2B protein [Heptacodium miconioides];; (*TAIR) AT2G38090.1 (e_value=8e-37) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc05g052610.2.1 (e_value=3e-58) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00025893g0011.1 protein AED:0.32 eAED:0.34 QI:0|0.58|0.55|0.77|0.58|0.66|18|577|700; (*GB) gi|359477163|ref|XP_002271327.2| (e_value=0.0) PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera];; (*SWP) sp|Q15061|WDR43_HUMAN (e_value=2e-13) WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3;; (*TAIR) AT5G11240.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615;; (*ITAG) Solyc02g030080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00025893g0012.1 protein AED:0.20 eAED:0.20 QI:292|0.9|1|1|0.5|0.54|11|2294|409; (*GB) gi|225458824|ref|XP_002285282.1| (e_value=9e-72) PREDICTED: interferon-related developmental regulator 1 [Vitis vinifera];; (*SWP) sp|Q5S1U6|IFRD1_PIG (e_value=8e-11) Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1;; (*TAIR) AT1G27760.3 (e_value=2e-69) | Symbols: SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family | chr1:9668895-9671322 FORWARD LENGTH=441;; (*ITAG) Solyc01g106150.1.1 (e_value=6e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85858825-85859985 transcript_region:SL2.40ch01:85858825..85859985- go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00012324g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|755|82; (*GB) gi|224152938|ref|XP_002337294.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT2G06010.1 (e_value=2e-11) | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336841-2338391 FORWARD LENGTH=188;; (*ITAG) Solyc12g009080.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2409947-2411521 transcript_region:SL2.40ch12:2409947..2411521+ functional_description:"OBP3-responsive gene 4 (AHRD V1 **-- D7L9C5_ARALY)"; NbS00060294g0006.1 protein AED:0.17 eAED:0.18 QI:84|1|0.5|1|1|1|2|0|153; (*GB) gi|351726052|ref|NP_001238649.1| (e_value=9e-71) uncharacterized protein LOC100500473 [Glycine max];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-35) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G39700.1 (e_value=1e-58) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:18424265-18424906 FORWARD LENGTH=158;; (*ITAG) Solyc04g054500.2.1 (e_value=2e-80) genomic_reference:SL2.40ch04 gene_region:51776499-51777793 transcript_region:SL2.40ch04:51776499..51777793+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00060294g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.4|1|0.5|0.4|5|77|193; (*GB) gi|225438635|ref|XP_002281281.1| (e_value=5e-66) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SCY3|FK162_ARATH (e_value=6e-60) Peptidyl-prolyl cis-trans isomerase FKBP16-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-2 PE=1 SV=1;; (*TAIR) AT4G39710.1 (e_value=5e-61) | Symbols: FKBP16-2 | FK506-binding protein 16-2 | chr4:18427249-18428325 REVERSE LENGTH=217;; (*ITAG) Solyc04g054520.2.1 (e_value=3e-85) genomic_reference:SL2.40ch04 gene_region:51791628-51795738 transcript_region:SL2.40ch04:51791628..51795738- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- D8PA41_9BACT); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00004418g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|216; (*GB) gi|283136110|gb|ADB11374.1| (e_value=2e-95) tau class glutathione transferase GSTU50 [Populus trichocarpa];; (*SWP) sp|P32110|GSTX6_SOYBN (e_value=1e-63) Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=3e-59) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc12g097080.1.1 (e_value=5e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64066026-64067160 transcript_region:SL2.40ch12:64066026..64067160- functional_description:"Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00004418g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|335; (*GB) gi|390410819|gb|AFL72079.1| (e_value=3e-165) chalcone synthase [Agastache rugosa];; (*SWP) sp|P22927|CHSG_PETHY (e_value=4e-166) Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2;; (*TAIR) AT5G13930.1 (e_value=1e-151) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc12g098090.1.1 (e_value=6e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64084430-64086291 transcript_region:SL2.40ch12:64084430..64086291+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- C5IWS6_NICAL); contains Interpro domain(s) IPR001099 Chalcone/stilbene synthase, N-terminal "; GO:0008415,GO:0008152,GO:0009058 NbS00004418g0012.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|263; (*GB) gi|224072612|ref|XP_002303806.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*TAIR) AT3G24020.1 (e_value=5e-101) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:8678827-8679558 FORWARD LENGTH=243;; (*ITAG) Solyc12g097090.1.1 (e_value=1e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64071732-64073176 transcript_region:SL2.40ch12:64071732..64073176+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q0WPQ6_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00004418g0013.1 protein AED:0.16 eAED:0.44 QI:0|0|0|1|0|0|3|0|119; (*ITAG) Solyc01g017760.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012305g0007.1 protein AED:0.17 eAED:0.22 QI:40|0|0|1|1|0.5|2|0|202; (*GB) gi|224094430|ref|XP_002310159.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKZ3|LBD36_ARATH (e_value=4e-69) LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1;; (*TAIR) AT5G66870.1 (e_value=3e-70) | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 | chr5:26706621-26707562 FORWARD LENGTH=313;; (*ITAG) Solyc02g065150.1.1 (e_value=7e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30880294-30881380 transcript_region:SL2.40ch02:30880294..30881380+ functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00012305g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.2|1|1|1|5|339|439; (*GB) gi|255562647|ref|XP_002522329.1| (e_value=1e-98) Upstream activation factor subunit UAF30, putative [Ricinus communis];; (*SWP) sp|O74503|UAF30_SCHPO (e_value=1e-14) Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1;; (*TAIR) AT3G19080.1 (e_value=2e-63) | Symbols: | SWIB complex BAF60b domain-containing protein | chr3:6596082-6598667 FORWARD LENGTH=462;; (*ITAG) Solyc01g108290.2.1 (e_value=9e-76) genomic_reference:SL2.40ch01 gene_region:87405735-87410001 transcript_region:SL2.40ch01:87405735..87410001+ go_terms:GO:0005515,GO:0003701 functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 ***- B6SZA4_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0005515,GO:0003701 NbS00018431g0009.1 protein AED:0.08 eAED:0.08 QI:385|1|1|1|0|0.5|2|185|329; (*GB) gi|147819141|emb|CAN68957.1| (e_value=4e-137) hypothetical protein VITISV_015733 [Vitis vinifera];; (*TAIR) AT1G15410.1 (e_value=2e-112) | Symbols: | aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330;; (*ITAG) Solyc03g116460.2.1 (e_value=5e-153) genomic_reference:SL2.40ch03 gene_region:59932809-59936469 transcript_region:SL2.40ch03:59932809..59936469- go_terms:GO:0008152 functional_description:"Aspartate racemase (AHRD V1 ***- D4XDK3_9BURK); contains Interpro domain(s) IPR001920 Asp/Glu racemase "; GO:0008152 NbS00018431g0011.1 protein AED:0.02 eAED:0.02 QI:248|1|1|1|1|1|2|295|263; (*GB) gi|224073744|ref|XP_002304152.1| (e_value=4e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT81|C3H39_ARATH (e_value=8e-22) Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1;; (*TAIR) AT3G19360.1 (e_value=6e-23) | Symbols: | Zinc finger (CCCH-type) family protein | chr3:6707544-6708864 FORWARD LENGTH=386;; (*ITAG) Solyc03g116410.1.1 (e_value=1e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59917775-59919730 transcript_region:SL2.40ch03:59917775..59919730+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 39 (AHRD V1 ***- C3H39_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00018431g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.5|4|0|794; (*GB) gi|225451363|ref|XP_002263205.1| (e_value=6e-136) PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera];; (*SWP) sp|Q9ZUA9|Y2181_ARATH (e_value=6e-107) PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=2 SV=1;; (*TAIR) AT2G01810.1 (e_value=5e-108) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:347537-349952 FORWARD LENGTH=697;; (*ITAG) Solyc03g116440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59928729-59931166 transcript_region:SL2.40ch03:59928729..59931166+ go_terms:GO:0003700 functional_description:"PHD finger family protein (AHRD V1 *--- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00018431g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|255553113|ref|XP_002517599.1| (e_value=2e-155) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FZK1|FBX6_ARATH (e_value=1e-12) F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1;; (*TAIR) AT1G27340.1 (e_value=9e-14) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:9495741-9497857 FORWARD LENGTH=467;; (*ITAG) Solyc03g116480.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59941068-59942174 transcript_region:SL2.40ch03:59941068..59942174+ functional_description:"F-box family protein (AHRD V1 **-- B9GZP5_POPTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00018431g0012.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|139; (*GB) gi|225442875|ref|XP_002281761.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100244693 [Vitis vinifera];; (*TAIR) AT5G11280.1 (e_value=2e-31) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3597321-3598347 FORWARD LENGTH=209;; (*ITAG) Solyc03g116470.1.1 (e_value=7e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59937028-59938028 transcript_region:SL2.40ch03:59937028..59938028- functional_description:"Unknown Protein (AHRD V1)"; NbS00011753g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.85|0.87|1|0.28|0.37|8|481|347; (*GB) gi|297735464|emb|CBI17904.3| (e_value=9e-168) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G28430.1 (e_value=1e-147) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:10657441-10662404 REVERSE LENGTH=837;; (*ITAG) Solyc07g018090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9155563-9159650 transcript_region:SL2.40ch07:9155563..9159650- functional_description:"Unknown Protein (AHRD V1)"; NbS00035296g0007.1 protein AED:0.07 eAED:0.07 QI:254|0.91|0.92|1|0.5|0.61|13|49|682; (*GB) gi|225459554|ref|XP_002285853.1| (e_value=0.0) PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAP8|LACS9_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1;; (*TAIR) AT1G77590.1 (e_value=0.0) | Symbols: LACS9 | long chain acyl-CoA synthetase 9 | chr1:29148501-29151776 REVERSE LENGTH=691;; (*ITAG) Solyc11g018580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8753165-8759597 transcript_region:SL2.40ch11:8753165..8759597+ go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid--CoA ligase 4 (AHRD V1 ***- C0HA93_SALSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00027776g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.4|1|0.5|0.4|5|614|333; (*GB) gi|11133835|sp|O04858.1|PP13_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP1 isozyme 3;; (*SWP) sp|O04858|PP13_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1;; (*TAIR) AT2G39840.1 (e_value=0.0) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g030490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:15529156-15536744 transcript_region:SL2.40ch06:15529156..15536744+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** D7LDT2_ARALY); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00035545g0005.1 protein AED:0.20 eAED:0.33 QI:0|0|0|1|0.6|0.66|6|0|316; (*GB) gi|296083098|emb|CBI22502.3| (e_value=3e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82243|GH39_ARATH (e_value=6e-48) Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1;; (*TAIR) AT2G47750.1 (e_value=5e-49) | Symbols: GH3.9 | putative indole-3-acetic acid-amido synthetase GH3.9 | chr2:19560307-19562974 REVERSE LENGTH=585;; (*ITAG) Solyc07g053030.2.1 (e_value=4e-72) genomic_reference:SL2.40ch07 gene_region:58796583-58799106 transcript_region:SL2.40ch07:58796583..58799106+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **-* B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00010846g0006.1 protein AED:0.02 eAED:0.02 QI:14|1|0.5|1|0|0|2|65|16 NbS00010846g0008.1 protein AED:0.47 eAED:0.47 QI:0|1|0|1|0|0|2|0|83 NbS00010846g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|477; (*GB) gi|255561618|ref|XP_002521819.1| (e_value=4e-65) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5REM8|TM205_PONAB (e_value=9e-18) Transmembrane protein 205 OS=Pongo abelii GN=TMEM205 PE=2 SV=1;; (*TAIR) AT1G72100.1 (e_value=1e-34) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr1:27127250-27128811 FORWARD LENGTH=480;; (*ITAG) Solyc11g022530.1.1 (e_value=7e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14399375-14401655 transcript_region:SL2.40ch11:14399375..14401655- functional_description:"Transmembrane protein 205 (AHRD V1 *-*- B9EN72_SALSA)"; NbS00040285g0004.1 protein AED:0.05 eAED:0.05 QI:83|1|1|1|0.5|0.6|5|697|268; (*GB) gi|255537970|ref|XP_002510050.1| (e_value=1e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G44920.1 (e_value=1e-72) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:16983229-16984408 REVERSE LENGTH=258;; (*ITAG) Solyc04g077500.2.1 (e_value=1e-138) genomic_reference:SL2.40ch04 gene_region:60037203-60044123 transcript_region:SL2.40ch04:60037203..60044123- functional_description:"Os03g0729100 protein (Fragment) (AHRD V1 ***- Q0DNX2_ORYSJ)"; NbS00002345g0007.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0|1|0.5|0.6|5|386|261; (*GB) gi|325516268|gb|ADZ24712.1| (e_value=2e-103) anthranilate phosphoribosyltransferase [Solanum pennellii];; (*SWP) sp|Q02166|TRPD_ARATH (e_value=6e-80) Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G17990.1 (e_value=5e-81) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444;; (*ITAG) Solyc06g071550.2.1 (e_value=3e-106) genomic_reference:SL2.40ch06 gene_region:40439408-40443221 transcript_region:SL2.40ch06:40439408..40443221+ go_terms:GO:0004048,GO:0005515 functional_description:"Anthranilate phosphoribosyltransferase (AHRD V1 **** A8IBN0_CHLRE); contains Interpro domain(s) IPR005940 Anthranilate phosphoribosyl transferase "; GO:0004048,GO:0005515 NbS00002345g0011.1 protein AED:0.20 eAED:0.26 QI:48|0.33|0|1|0|0.25|4|0|187; (*GB) gi|90399070|emb|CAJ86292.1| (e_value=3e-13) H0124B04.9 [Oryza sativa Indica Group];; (*SWP) sp|Q7XQ97|DRE21_ORYSJ (e_value=7e-14) Anamorsin homolog 1 OS=Oryza sativa subsp. japonica GN=Os04g0674400 PE=2 SV=2;; (*ITAG) Solyc08g075730.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:57017113-57024895 transcript_region:SL2.40ch08:57017113..57024895- go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00002345g0010.1 protein AED:0.36 eAED:0.44 QI:0|0|0|1|0|0|4|0|155 NbS00002345g0009.1 protein AED:0.41 eAED:0.73 QI:0|0|0|1|0|0|2|0|80 NbS00003722g0007.1 protein AED:0.17 eAED:0.17 QI:141|1|1|1|1|1|8|261|449; (*GB) gi|224108635|ref|XP_002314917.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69040.2 (e_value=0.0) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25957843-25960079 FORWARD LENGTH=455;; (*ITAG) Solyc05g011920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5153637-5156871 transcript_region:SL2.40ch05:5153637..5156871+ go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00003722g0006.1 protein AED:0.35 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|225466219|ref|XP_002267209.1| (e_value=4e-36) PREDICTED: flavonol sulfotransferase-like [Vitis vinifera];; (*SWP) sp|P52839|SOT12_ARATH (e_value=2e-31) Cytosolic sulfotransferase 12 OS=Arabidopsis thaliana GN=SOT12 PE=1 SV=2;; (*TAIR) AT2G03760.1 (e_value=2e-32) | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12, SOT12 | sulphotransferase 12 | chr2:1149475-1150455 REVERSE LENGTH=326;; (*ITAG) Solyc05g011870.1.1 (e_value=6e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbS00007217g0003.1 protein AED:0.07 eAED:0.07 QI:301|1|1|1|1|1|6|319|227; (*GB) gi|225447834|ref|XP_002270590.1| (e_value=1e-82) PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Vitis vinifera];; (*SWP) sp|Q9FY89|VP202_ARATH (e_value=1e-77) Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1;; (*TAIR) AT5G09260.1 (e_value=1e-78) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216;; (*ITAG) Solyc12g096650.1.1 (e_value=7e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63815334-63820210 transcript_region:SL2.40ch12:63815334..63820210+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 6 (AHRD V1 **-- B6TFV6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00046565g0017.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.5|1|0.66|0.5|4|0|269; (*GB) gi|224130614|ref|XP_002328333.1| (e_value=2e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT3G04650.1 (e_value=5e-72) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:1262017-1264343 FORWARD LENGTH=486;; (*ITAG) Solyc01g097160.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:79868250-79874975 transcript_region:SL2.40ch01:79868250..79874975+ go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B7G7N7_PHATR); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00046565g0006.1 protein AED:0.25 eAED:0.25 QI:347|0.71|0.75|1|1|1|8|234|419; (*GB) gi|198400339|gb|ACH87178.1| (e_value=2e-87) unknown protein [Camellia sinensis];; (*TAIR) AT1G54460.1 (e_value=1e-38) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr1:20340907-20342900 REVERSE LENGTH=338;; (*ITAG) Solyc01g097120.2.1 (e_value=4e-160) genomic_reference:SL2.40ch01 gene_region:79849857-79853064 transcript_region:SL2.40ch01:79849857..79853064+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00046565g0004.1 protein AED:0.27 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|351; (*GB) gi|147862837|emb|CAN78368.1| (e_value=0.0) hypothetical protein VITISV_028672 [Vitis vinifera];; (*SWP) sp|Q9LZP3|PP293_ARATH (e_value=4e-170) Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1;; (*TAIR) AT3G62470.1 (e_value=3e-171) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23106600-23108399 REVERSE LENGTH=599;; (*ITAG) Solyc01g097130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046565g0007.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|1|1|2|0|245; (*GB) gi|356549210|ref|XP_003542990.1| (e_value=1e-67) PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Glycine max];; (*SWP) sp|Q9LZP3|PP293_ARATH (e_value=4e-67) Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1;; (*TAIR) AT3G62470.1 (e_value=3e-68) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23106600-23108399 REVERSE LENGTH=599;; (*ITAG) Solyc01g097130.2.1 (e_value=5e-79) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046565g0008.1 protein AED:0.36 eAED:0.36 QI:160|0.66|0.75|1|1|1|4|350|160; (*GB) gi|351722004|ref|NP_001236717.1| (e_value=4e-68) uncharacterized protein LOC100305790 [Glycine max];; (*SWP) sp|Q8GY31|CDC25_ARATH (e_value=2e-65) Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana GN=CDC25 PE=1 SV=1;; (*TAIR) AT5G03455.1 (e_value=1e-66) | Symbols: CDC25, ARATH;CDC25, ACR2 | Rhodanese/Cell cycle control phosphatase superfamily protein | chr5:862592-863949 FORWARD LENGTH=146;; (*ITAG) Solyc01g097140.2.1 (e_value=2e-87) genomic_reference:SL2.40ch01 gene_region:79858882-79862630 transcript_region:SL2.40ch01:79858882..79862630+ go_terms:GO:0004725 functional_description:"Dual-specificity tyrosine-phosphatase CDC25 (AHRD V1 **** Q10SX6_ORYSJ); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004725 NbS00026487g0010.1 protein AED:0.01 eAED:0.01 QI:28|0|0|0.5|1|1|2|0|114; (*ITAG) Solyc05g046270.2.1 (e_value=5e-20) genomic_reference:SL2.40ch05 gene_region:57585778-57586448 transcript_region:SL2.40ch05:57585778..57586448- functional_description:"Unknown Protein (AHRD V1)"; NbS00026487g0009.1 protein AED:0.10 eAED:0.10 QI:126|1|1|1|0.5|0.33|3|259|279; (*GB) gi|22947852|gb|AAN07898.1| (e_value=4e-163) xyloglucan endotransglycosylase [Malus x domestica];; (*SWP) sp|Q38910|XTH23_ARATH (e_value=7e-142) Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1;; (*TAIR) AT4G25810.1 (e_value=5e-143) | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286;; (*ITAG) Solyc05g046290.2.1 (e_value=7e-172) genomic_reference:SL2.40ch05 gene_region:57632274-57634988 transcript_region:SL2.40ch05:57632274..57634988+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00026487g0002.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.66|1|0|0.33|3|177|730; (*GB) gi|225438217|ref|XP_002263704.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g49740-like [Vitis vinifera];; (*SWP) sp|Q9M2Y4|PP276_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1;; (*TAIR) AT3G49740.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18447788-18450001 FORWARD LENGTH=737;; (*ITAG) Solyc05g046280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:57613049-57615211 transcript_region:SL2.40ch05:57613049..57615211+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LSX3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00026630g0009.1 protein AED:0.38 eAED:0.38 QI:281|0.8|1|1|0.8|0.83|6|416|286; (*GB) gi|255541300|ref|XP_002511714.1| (e_value=2e-137) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8VYP5|ZDH14_ARATH (e_value=3e-131) Probable S-acyltransferase At3g60800 OS=Arabidopsis thaliana GN=At3g60800 PE=2 SV=1;; (*TAIR) AT3G60800.1 (e_value=2e-132) | Symbols: | DHHC-type zinc finger family protein | chr3:22467486-22469273 REVERSE LENGTH=307;; (*ITAG) Solyc10g018160.1.1 (e_value=2e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:6724903-6733852 transcript_region:SL2.40ch10:6724903..6733852+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- A8N304_COPC7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00026630g0102.1 protein AED:0.30 eAED:0.30 QI:20|1|1|1|0.8|0.83|6|410|311 NbS00014725g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|747; (*GB) gi|225452238|ref|XP_002268821.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Vitis vinifera];; (*SWP) sp|Q9SNB7|PP264_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1;; (*TAIR) AT3G46610.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:17160224-17162221 REVERSE LENGTH=665;; (*ITAG) Solyc02g093620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48994052-48996280 transcript_region:SL2.40ch02:48994052..48996280+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6I3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014725g0009.1 protein AED:0.21 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|138 NbS00014725g0014.1 protein AED:0.26 eAED:0.26 QI:348|0.8|0.72|1|0.9|0.81|11|0|530; (*GB) gi|224055641|ref|XP_002298580.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=2e-168) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT3G27390.1 (e_value=2e-169) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10133372-10136111 REVERSE LENGTH=588;; (*ITAG) Solyc02g093630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48999291-49003613 transcript_region:SL2.40ch02:48999291..49003613+ functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 **-- Y3739_ARATH)"; NbS00014725g0012.1 protein AED:0.10 eAED:0.10 QI:55|1|1|1|0|0.5|2|345|163; (*GB) gi|225452240|ref|XP_002271245.1| (e_value=8e-59) PREDICTED: uncharacterized protein LOC100259468 [Vitis vinifera];; (*SWP) sp|Q0WPX7|BAG2_ARATH (e_value=3e-21) BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana GN=BAG2 PE=2 SV=1;; (*TAIR) AT5G14360.1 (e_value=4e-51) | Symbols: | Ubiquitin-like superfamily protein | chr5:4631038-4631641 FORWARD LENGTH=163;; (*ITAG) Solyc02g093610.2.1 (e_value=4e-81) genomic_reference:SL2.40ch02 gene_region:48985424-48986499 transcript_region:SL2.40ch02:48985424..48986499- functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B6STZ6_MAIZE); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00014725g0004.1 protein AED:0.12 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|350; (*GB) gi|62956018|gb|AAY23354.1| (e_value=0.0) 3-ketoacyl-CoA reductase 1 [Gossypium hirsutum];; (*SWP) sp|Q6P7R8|DHB12_RAT (e_value=4e-60) Estradiol 17-beta-dehydrogenase 12 OS=Rattus norvegicus GN=Hsd17b12 PE=2 SV=1;; (*TAIR) AT1G67730.1 (e_value=9e-157) | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318;; (*ITAG) Solyc02g093640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49003652-49006247 transcript_region:SL2.40ch02:49003652..49006247- go_terms:GO:0045703 functional_description:"3-ketoacyl-CoA reductase 1 (AHRD V1 **-- Q0VH88_GOSHI); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0045703 NbS00023868g0001.1 protein AED:0.68 eAED:0.69 QI:0|0|0|1|1|1|2|0|142; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-25) hypothetical protein [Nicotiana tabacum]; NbS00023321g0012.1 protein AED:0.21 eAED:0.22 QI:54|0.8|0.66|1|1|1|6|681|304; (*GB) gi|225461989|ref|XP_002267477.1| (e_value=1e-46) PREDICTED: coiled-coil domain-containing protein 22 [Vitis vinifera];; (*TAIR) AT1G55830.2 (e_value=3e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530). | chr1:20867918-20870205 REVERSE LENGTH=493;; (*ITAG) Solyc07g065760.1.1 (e_value=2e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64630403-64632896 transcript_region:SL2.40ch07:64630403..64632896- functional_description:"Coiled-coil domain-containing protein 22 (AHRD V1 *-*- C0H977_SALSA); contains Interpro domain(s) IPR008530 Protein of unknown function DUF812 "; NbS00023321g0011.1 protein AED:0.26 eAED:0.27 QI:137|0.85|0.62|1|0.85|0.75|8|0|232; (*GB) gi|356563326|ref|XP_003549915.1| (e_value=7e-46) PREDICTED: protein CWC15 homolog [Glycine max];; (*SWP) sp|Q5B020|CWC15_EMENI (e_value=1e-18) Pre-mRNA-splicing factor cwc15 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc15 PE=3 SV=1;; (*TAIR) AT3G13200.1 (e_value=2e-36) | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle control family protein | chr3:4242239-4243976 FORWARD LENGTH=230;; (*ITAG) Solyc10g005800.2.1 (e_value=2e-46) genomic_reference:SL2.40ch10 gene_region:632974-637721 transcript_region:SL2.40ch10:632974..637721- go_terms:GO:0005515,GO:0003723 functional_description:"CWC15 homolog (AHRD V1 ***- B9EL88_SALSA); contains Interpro domain(s) IPR006973 Cwf15/Cwc15 cell cycle control protein "; GO:0005515,GO:0003723 NbS00023321g0019.1 protein AED:0.13 eAED:0.22 QI:0|0.6|0.45|1|0.6|0.63|11|0|679; (*GB) gi|359494218|ref|XP_002267511.2| (e_value=0.0) PREDICTED: ABC transporter G family member 26-like [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=0.0) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=0.0) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64634657-64637204 transcript_region:SL2.40ch07:64634657..64637204+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00023321g0003.1 protein AED:0.38 eAED:0.39 QI:0|0|0.5|1|0|0.5|2|60|336; (*GB) gi|224061256|ref|XP_002300393.1| (e_value=9e-131) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55960.1 (e_value=2e-123) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc07g065790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64638598-64641853 transcript_region:SL2.40ch07:64638598..64641853+ functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH); contains Interpro domain(s) IPR002549 Uncharacterised protein family UPF0118 "; NbS00026362g0010.1 protein AED:0.66 eAED:0.71 QI:0|0|0|0.5|1|0.75|4|0|120; (*GB) gi|255537695|ref|XP_002509914.1| (e_value=7e-17) aldose 1-epimerase, putative [Ricinus communis];; (*TAIR) AT4G23730.1 (e_value=2e-16) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=3e-27) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00026362g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|752; (*GB) gi|225438111|ref|XP_002277883.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8GWV5|PUB3_ARATH (e_value=0.0) U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2;; (*TAIR) AT3G54790.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:20281830-20284363 REVERSE LENGTH=760;; (*ITAG) Solyc09g025270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19293483-19298869 transcript_region:SL2.40ch09:19293483..19298869+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 3 (AHRD V1 **-- PUB3_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00022683g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.66|1|0.8|0.83|6|444|617; (*GB) gi|225436373|ref|XP_002271001.1| (e_value=0.0) PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q9FYC7|PDAT2_ARATH (e_value=0.0) Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1;; (*TAIR) AT3G44830.1 (e_value=0.0) | Symbols: | Lecithin:cholesterol acyltransferase family protein | chr3:16368890-16372356 FORWARD LENGTH=665;; (*ITAG) Solyc11g066710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49552357-49557089 transcript_region:SL2.40ch11:49552357..49557089- go_terms:GO:0006629 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 ***- B3LPN2_YEAS1); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00022683g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|145; (*GB) gi|356543528|ref|XP_003540212.1| (e_value=7e-31) PREDICTED: GDSL esterase/lipase At5g22810-like [Glycine max];; (*SWP) sp|Q9FFC6|GDL78_ARATH (e_value=1e-30) GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=2 SV=3;; (*TAIR) AT5G22810.1 (e_value=6e-32) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:7621568-7623367 FORWARD LENGTH=337;; (*ITAG) Solyc11g066700.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49545264-49549128 transcript_region:SL2.40ch11:49545264..49549128- go_terms:GO:0005515,GO:0004091 functional_description:"GDSL esterase/lipase At5g22810 (AHRD V1 ***- GDL78_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0005515,GO:0004091 NbS00022683g0009.1 protein AED:0.20 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|87; (*GB) gi|225436377|ref|XP_002271178.1| (e_value=4e-22) PREDICTED: recQ-mediated genome instability protein 2 [Vitis vinifera];; (*TAIR) AT1G08390.1 (e_value=1e-18) | Symbols: | unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2642220-2643103 FORWARD LENGTH=137;; (*ITAG) Solyc11g066690.1.1 (e_value=6e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49539253-49543914 transcript_region:SL2.40ch11:49539253..49543914- go_terms:GO:0003676 functional_description:"OB-fold nucleic acid binding domain containing protein expressed (AHRD V1 ***- Q10F22_ORYSJ); contains Interpro domain(s) IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type "; GO:0003676 NbS00029284g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.83|1|1|1|6|983|259; (*GB) gi|147837885|emb|CAN76047.1| (e_value=4e-73) hypothetical protein VITISV_037710 [Vitis vinifera];; (*TAIR) AT3G49645.1 (e_value=1e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18403129-18404427 REVERSE LENGTH=220;; (*ITAG) Solyc09g008680.2.1 (e_value=4e-112) genomic_reference:SL2.40ch09 gene_region:2128294-2131876 transcript_region:SL2.40ch09:2128294..2131876- functional_description:"FAD binding protein (AHRD V1 ***- B6TF47_MAIZE)"; NbS00029284g0008.1 protein AED:0.24 eAED:0.24 QI:102|0.83|1|1|0.5|0.57|7|441|556; (*GB) gi|12539611|gb|AAG59585.1|AF229927_1 (e_value=0.0) threonine deaminase [Nicotiana attenuata];; (*SWP) sp|P25306|THD1_SOLLC (e_value=0.0) Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=0.0) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc09g008670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2123840-2127943 transcript_region:SL2.40ch09:2123840..2127943+ go_terms:GO:0004794 functional_description:"Threonine ammonia-lyase biosynthetic (AHRD V1 **** B1XNT1_SYNP2); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0004794 NbS00008910g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|0.5|0.6|5|0|549; (*GB) gi|15082058|gb|AAK84008.1|AF393847_1 (e_value=0.0) beta-amylase PCT-BMYI [Solanum tuberosum];; (*SWP) sp|O23553|BAM3_ARATH (e_value=0.0) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=0.0) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g077530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58684261-58687653 transcript_region:SL2.40ch08:58684261..58687653+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q5F305_SOYBN); contains Interpro domain(s) IPR001371 Glycoside hydrolase, family 14B, plant "; GO:0016161 NbS00006288g0001.1 protein AED:0.13 eAED:0.14 QI:0|0.90|0.58|1|1|1|12|0|1850; (*GB) gi|255541336|ref|XP_002511732.1| (e_value=0.0) cytohesin 1, 2, 3, putative [Ricinus communis];; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=0.0) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT3G60860.1 (e_value=0.0) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793;; (*ITAG) Solyc01g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00006288g0006.1 protein AED:0.23 eAED:0.42 QI:0|0|0|1|1|1|3|0|174; (*GB) gi|225453929|ref|XP_002279679.1| (e_value=8e-33) PREDICTED: probable calcium-binding protein CML10 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8RZB5|CML10_ORYSJ (e_value=8e-29) Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=1e-22) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc04g008000.2.1 (e_value=2e-25) genomic_reference:SL2.40ch04 gene_region:1652161-1653061 transcript_region:SL2.40ch04:1652161..1653061- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D9J0A7_9ROSI); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00006288g0003.1 protein AED:0.12 eAED:0.30 QI:0|0.5|0|1|1|1|3|0|281; (*GB) gi|225453933|ref|XP_002279636.1| (e_value=9e-57) PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=7e-28) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=9e-46) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc01g091470.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:76860856-76862402 transcript_region:SL2.40ch01:76860856..76862402+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00040646g0001.1 protein AED:0.33 eAED:0.33 QI:0|0.88|0.7|1|1|1|10|0|327; (*GB) gi|224138682|ref|XP_002322875.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXS6|CISY2_ARATH (e_value=0.0) Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1;; (*TAIR) AT3G58750.1 (e_value=0.0) | Symbols: CSY2 | citrate synthase 2 | chr3:21724564-21727458 REVERSE LENGTH=514;; (*ITAG) Solyc12g011000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3858049-3864969 transcript_region:SL2.40ch12:3858049..3864969- go_terms:GO:0005737,GO:0006099,GO:0044262 functional_description:"Citrate synthase (AHRD V1 ***- B9IFM7_POPTR); contains Interpro domain(s) IPR010953 Citrate synthase, type II "; GO:0005737,GO:0006099,GO:0044262 NbS00019985g0004.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|5732912|gb|AAD49336.1|AF166277_1 (e_value=3e-37) low molecular weight heat-shock protein [Nicotiana tabacum];; (*SWP) sp|P05478|HSP16_SOYBN (e_value=4e-29) 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1;; (*TAIR) AT5G59720.1 (e_value=1e-28) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161;; (*ITAG) Solyc09g015000.2.1 (e_value=7e-34) genomic_reference:SL2.40ch09 gene_region:7427223-7428264 transcript_region:SL2.40ch09:7427223..7428264+ functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00019985g0005.1 protein AED:0.28 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|108 NbS00019985g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|91; (*GB) gi|224134274|ref|XP_002321779.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G65260.1 (e_value=3e-17) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc03g094090.2.1 (e_value=2e-50) genomic_reference:SL2.40ch03 gene_region:49250587-49251515 transcript_region:SL2.40ch03:49250587..49251515- functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY)"; NbS00034361g0007.1 protein AED:0.13 eAED:0.13 QI:645|0.8|1|1|1|1|6|283|257; (*GB) gi|297829330|ref|XP_002882547.1| (e_value=1e-127) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q15024|EXOS7_HUMAN (e_value=2e-42) Exosome complex component RRP42 OS=Homo sapiens GN=EXOSC7 PE=1 SV=3;; (*TAIR) AT3G07750.2 (e_value=5e-128) | Symbols: | 3'-5'-exoribonuclease family protein | chr3:2473486-2475218 FORWARD LENGTH=286;; (*ITAG) Solyc08g007520.2.1 (e_value=3e-145) genomic_reference:SL2.40ch08 gene_region:2066461-2069311 transcript_region:SL2.40ch08:2066461..2069311- go_terms:GO:0042802,GO:0000175 functional_description:"Exosome complex exonuclease RRP42 (AHRD V1 ***- B6T4R9_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0042802,GO:0000175 NbS00034361g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.8|1|1|1|5|290|325; (*GB) gi|225426649|ref|XP_002274756.1| (e_value=2e-110) PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=1e-92) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g007530.2.1 (e_value=4e-151) genomic_reference:SL2.40ch08 gene_region:2071921-2078161 transcript_region:SL2.40ch08:2071921..2078161- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00034361g0012.1 protein AED:0.11 eAED:0.11 QI:110|1|0.66|1|0|0|3|0|116; (*GB) gi|297844102|ref|XP_002889932.1| (e_value=7e-55) cornichon family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84W04|CNIH4_ARATH (e_value=3e-56) Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1;; (*TAIR) AT1G12390.1 (e_value=3e-57) | Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137;; (*ITAG) Solyc08g007510.2.1 (e_value=2e-59) genomic_reference:SL2.40ch08 gene_region:2061088-2066053 transcript_region:SL2.40ch08:2061088..2066053+ go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00034361g0009.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|356495625|ref|XP_003516675.1| (e_value=2e-22) PREDICTED: uncharacterized protein At4g22758-like [Glycine max];; (*SWP) sp|Q56XJ7|Y4276_ARATH (e_value=3e-12) Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1;; (*TAIR) AT4G22758.1 (e_value=2e-13) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). | chr4:11958477-11959904 FORWARD LENGTH=255;; (*ITAG) Solyc08g007500.2.1 (e_value=2e-29) genomic_reference:SL2.40ch08 gene_region:2057300-2059676 transcript_region:SL2.40ch08:2057300..2059676+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 **-- D7ME07_ARALY)"; NbS00005865g0002.1 protein AED:0.03 eAED:0.03 QI:38|1|1|1|1|1|2|137|119; (*GB) gi|343424521|gb|AEM24937.1| (e_value=1e-61) thionin-like protein [Nicotiana tabacum];; (*ITAG) Solyc10g007870.2.1 (e_value=5e-29) genomic_reference:SL2.40ch10 gene_region:2075626-2077518 transcript_region:SL2.40ch10:2075626..2077518+ functional_description:"Tumor-related protein (AHRD V1 ***- Q40447_9SOLA)"; NbS00009140g0013.1 protein AED:0.10 eAED:0.10 QI:108|0.93|0.87|1|0.86|0.87|16|988|498; (*GB) gi|255543525|ref|XP_002512825.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19340.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3754) | chr3:6701387-6704071 REVERSE LENGTH=487;; (*ITAG) Solyc10g007530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1851352-1852833 transcript_region:SL2.40ch10:1851352..1852833+ functional_description:"Genomic DNA chromosome 3 P1 clone MLD14 (AHRD V1 ***- Q9LT83_ARATH)"; NbS00009140g0015.1 protein AED:0.28 eAED:0.30 QI:55|0.83|0.53|1|0.66|0.76|13|0|794; (*GB) gi|356502253|ref|XP_003519934.1| (e_value=7e-109) PREDICTED: uncharacterized protein LOC100776137 [Glycine max];; (*TAIR) AT5G13950.2 (e_value=6e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:4496196-4500206 REVERSE LENGTH=939;; (*ITAG) Solyc02g094540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49655327-49659264 transcript_region:SL2.40ch02:49655327..49659264+ functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 *-*- Q9FFY0_ARATH); contains Interpro domain(s) IPR009966 Prosystemin "; NbS00009140g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|147802223|emb|CAN68271.1| (e_value=2e-42) hypothetical protein VITISV_029912 [Vitis vinifera];; (*TAIR) AT5G13950.3 (e_value=8e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1). | chr5:4496196-4500206 REVERSE LENGTH=954;; (*ITAG) Solyc02g094540.2.1 (e_value=8e-108) genomic_reference:SL2.40ch02 gene_region:49655327-49659264 transcript_region:SL2.40ch02:49655327..49659264+ functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 *-*- Q9FFY0_ARATH); contains Interpro domain(s) IPR009966 Prosystemin "; NbS00009140g0014.1 protein AED:0.25 eAED:0.25 QI:0|1|0.85|1|0.66|0.85|7|0|401; (*GB) gi|225451635|ref|XP_002277073.1| (e_value=0.0) PREDICTED: nodulation receptor kinase [Vitis vinifera];; (*SWP) sp|Q8LKZ1|NORK_PEA (e_value=4e-55) Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1;; (*TAIR) AT3G26700.1 (e_value=1e-162) | Symbols: | Protein kinase superfamily protein | chr3:9810669-9812356 FORWARD LENGTH=380;; (*ITAG) Solyc02g094570.2.1 (e_value=2e-163) genomic_reference:SL2.40ch02 gene_region:49679754-49681584 transcript_region:SL2.40ch02:49679754..49681584- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM36_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00038731g0004.1 protein AED:0.12 eAED:0.12 QI:30|0.66|0.75|1|0.66|0.75|4|0|325; (*GB) gi|269974854|gb|ACZ55224.1| (e_value=0.0) S-adenosyl-L-methionine:nicotinic acid carboxyl methyltransferase [Nicotiana gossei];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=6e-105) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT4G36470.1 (e_value=1e-75) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17215128-17216475 REVERSE LENGTH=371;; (*ITAG) Solyc04g055260.2.1 (e_value=1e-141) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00017739g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0.8|1|1|1|5|0|312; (*GB) gi|224108011|ref|XP_002314687.1| (e_value=2e-160) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32040.1 (e_value=8e-154) | Symbols: | Major facilitator superfamily protein | chr2:13635116-13637592 FORWARD LENGTH=560;; (*ITAG) Solyc09g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63405858-63414461 transcript_region:SL2.40ch09:63405858..63414461- go_terms:GO:0015231 functional_description:"Folate/biopterin transporter family protein expressed (AHRD V1 **** Q10C46_ORYSJ); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0015231 NbS00017739g0009.1 protein AED:0.35 eAED:0.52 QI:198|0|0.16|0.83|1|1|6|307|172; (*GB) gi|224108011|ref|XP_002314687.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32040.1 (e_value=5e-48) | Symbols: | Major facilitator superfamily protein | chr2:13635116-13637592 FORWARD LENGTH=560;; (*ITAG) Solyc09g082200.2.1 (e_value=8e-54) genomic_reference:SL2.40ch09 gene_region:63405858-63414461 transcript_region:SL2.40ch09:63405858..63414461- go_terms:GO:0015231 functional_description:"Folate/biopterin transporter family protein expressed (AHRD V1 **** Q10C46_ORYSJ); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0015231 NbS00002489g0001.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|0|0|2|0|143; (*ITAG) Solyc09g008740.1.1 (e_value=2e-11) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:2170423-2170956 transcript_region:SL2.40ch09:2170423..2170956- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00033741g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.71|1|0.66|0.42|7|0|475; (*GB) gi|296084520|emb|CBI25541.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VZJ9|Y4330_ARATH (e_value=1e-115) Probable leucine-rich repeat receptor-like protein kinase At4g00330 OS=Arabidopsis thaliana GN=At4g00330 PE=2 SV=1;; (*TAIR) AT2G11520.1 (e_value=2e-178) | Symbols: CRCK3 | calmodulin-binding receptor-like cytoplasmic kinase 3 | chr2:4619145-4621448 FORWARD LENGTH=510;; (*ITAG) Solyc07g007780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2416863-2426049 transcript_region:SL2.40ch07:2416863..2426049- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM39_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00025298g0008.1 protein AED:0.29 eAED:0.29 QI:132|0.71|0.75|1|0.57|0.62|8|335|243; (*GB) gi|297742337|emb|CBI34486.3| (e_value=2e-90) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23895.2 (e_value=3e-92) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr4:12422883-12424146 FORWARD LENGTH=247;; (*ITAG) Solyc12g055950.1.1 (e_value=3e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47296101-47301387 transcript_region:SL2.40ch12:47296101..47301387- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; NbS00025298g0012.1 protein AED:0.42 eAED:0.42 QI:0|1|0.33|1|1|0.66|3|0|203; (*GB) gi|225426324|ref|XP_002269028.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100246151 [Vitis vinifera];; (*TAIR) AT1G64430.2 (e_value=7e-82) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23933541-23936336 FORWARD LENGTH=559;; (*ITAG) Solyc12g055940.1.1 (e_value=1e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47287938-47294874 transcript_region:SL2.40ch12:47287938..47294874- functional_description:"Unknown Protein (AHRD V1)"; NbS00025298g0014.1 protein AED:0.42 eAED:0.46 QI:0|0.33|0.5|1|0.66|0.75|4|0|215; (*GB) gi|147766222|emb|CAN60038.1| (e_value=2e-50) hypothetical protein VITISV_007803 [Vitis vinifera];; (*TAIR) AT1G64430.2 (e_value=1e-44) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23933541-23936336 FORWARD LENGTH=559;; (*ITAG) Solyc12g055940.1.1 (e_value=5e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47287938-47294874 transcript_region:SL2.40ch12:47287938..47294874- functional_description:"Unknown Protein (AHRD V1)"; NbS00050877g0001.1 protein AED:0.14 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|96; (*ITAG) Solyc01g090960.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:76435187-76436001 transcript_region:SL2.40ch01:76435187..76436001+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036380g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|64420807|gb|AAY41426.1| (e_value=3e-63) putative L24 ribosomal protein [Ipomoea batatas];; (*SWP) sp|P51414|RL261_ARATH (e_value=2e-63) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2;; (*TAIR) AT3G49910.1 (e_value=2e-64) | Symbols: | Translation protein SH3-like family protein | chr3:18504311-18504751 FORWARD LENGTH=146;; (*ITAG) Solyc02g064670.1.1 (e_value=1e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30328162-30328602 transcript_region:SL2.40ch02:30328162..30328602+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L26-like 1 (AHRD V1 ***- B7TJ03_PIG); contains Interpro domain(s) IPR005756 Ribosomal protein L26, eukaryotic/archaeal "; GO:0003735,GO:0003723 NbS00036380g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|225441898|ref|XP_002284412.1| (e_value=3e-28) PREDICTED: uncharacterized protein LOC100246864 isoform 1 [Vitis vinifera];; (*TAIR) AT2G41600.3 (e_value=1e-19) | Symbols: | Mitochondrial glycoprotein family protein | chr2:17345597-17346701 REVERSE LENGTH=207;; (*ITAG) Solyc04g016250.2.1 (e_value=9e-33) genomic_reference:SL2.40ch04 gene_region:7045007-7049591 transcript_region:SL2.40ch04:7045007..7049591+ go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein expressed (AHRD V1 *-*- Q2RAS2_ORYSJ); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00036380g0012.1 protein AED:0.30 eAED:0.30 QI:583|0.66|0.71|1|1|1|7|301|219; (*GB) gi|7387809|sp|O49204.1|KAPS_CATRO (e_value=3e-120) RecName: Full=Adenylyl-sulfate kinase, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor;; (*SWP) sp|O49204|KAPS_CATRO (e_value=9e-122) Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1;; (*TAIR) AT2G14750.1 (e_value=1e-107) | Symbols: APK, AKN1, ATAKN1, APK1 | APS kinase | chr2:6314128-6315501 FORWARD LENGTH=276;; (*ITAG) Solyc02g064650.2.1 (e_value=8e-134) genomic_reference:SL2.40ch02 gene_region:30310743-30315618 transcript_region:SL2.40ch02:30310743..30315618- go_terms:GO:0004020 functional_description:"Adenylyl-sulfate kinase (AHRD V1 **** C6TL96_SOYBN); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0004020 NbS00016734g0009.1 protein AED:0.07 eAED:0.07 QI:223|1|1|1|0|0|3|360|552; (*GB) gi|71726942|gb|AAZ39642.1| (e_value=0.0) cytochrome P450 fatty acid omega-hydroxylase [Petunia x hybrida];; (*SWP) sp|O23066|C86A2_ARATH (e_value=0.0) Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1;; (*TAIR) AT4G00360.1 (e_value=0.0) | Symbols: CYP86A2, ATT1 | cytochrome P450, family 86, subfamily A, polypeptide 2 | chr4:160951-162778 FORWARD LENGTH=553;; (*ITAG) Solyc08g081220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61446043-61447707 transcript_region:SL2.40ch08:61446043..61447707- go_terms:GO:0008393,GO:0019825 functional_description:"Cytochrome P450"; GO:0008393,GO:0019825 NbS00016734g0008.1 protein AED:0.12 eAED:0.12 QI:145|0.5|0.45|1|0.7|0.72|11|0|592; (*GB) gi|359474195|ref|XP_003631415.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263296 [Vitis vinifera];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=4e-43) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT1G63700.1 (e_value=1e-152) | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily protein | chr1:23625208-23629031 REVERSE LENGTH=883;; (*ITAG) Solyc08g081210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61435787-61442377 transcript_region:SL2.40ch08:61435787..61442377- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00015152g0011.1 protein AED:0.12 eAED:0.12 QI:220|0.90|0.81|1|0.66|0.72|22|623|771; (*GB) gi|75288399|sp|Q5YLB4.1|GYRB_NICBE (e_value=0.0) RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB4|GYRB_NICBE (e_value=0.0) DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1;; (*TAIR) AT5G04130.1 (e_value=0.0) | Symbols: GYRB2 | DNA GYRASE B2 | chr5:1122084-1128031 REVERSE LENGTH=732;; (*ITAG) Solyc12g021230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14910466-14933796 transcript_region:SL2.40ch12:14910466..14933796+ go_terms:GO:0006265,GO:0005524,GO:0005694 functional_description:"DNA gyrase subunit B (AHRD V1 ***- Q8YLN3_ANASP); contains Interpro domain(s) IPR011557 DNA gyrase, subunit B "; GO:0006265,GO:0005524,GO:0005694 NbS00061217g0001.1 protein AED:0.02 eAED:0.02 QI:32|1|0.66|1|0|0|3|288|109; (*GB) gi|240254337|ref|NP_177030.4| (e_value=2e-27) PLAC8 family protein [Arabidopsis thaliana];; (*SWP) sp|Q9SX26|PCR12_ARATH (e_value=6e-29) Protein PLANT CADMIUM RESISTANCE 12 OS=Arabidopsis thaliana GN=PCR12 PE=2 SV=2;; (*TAIR) AT1G68630.1 (e_value=5e-30) | Symbols: | PLAC8 family protein | chr1:25768653-25769458 FORWARD LENGTH=161;; (*ITAG) Solyc12g013570.1.1 (e_value=1e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:4413249-4413993 transcript_region:SL2.40ch12:4413249..4413993+ functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00005343g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|330; (*GB) gi|225438803|ref|XP_002283219.1| (e_value=4e-108) PREDICTED: probable WRKY transcription factor 7-like [Vitis vinifera];; (*SWP) sp|Q9STX0|WRKY7_ARATH (e_value=2e-65) Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1;; (*TAIR) AT4G24240.1 (e_value=1e-66) | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein 7 | chr4:12571930-12573446 FORWARD LENGTH=353;; (*ITAG) Solyc02g093050.2.1 (e_value=3e-121) genomic_reference:SL2.40ch02 gene_region:48575427-48577339 transcript_region:SL2.40ch02:48575427..48577339+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 26 (AHRD V1 ***- C9DI15_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00061136g0003.1 protein AED:0.19 eAED:0.22 QI:0|0.5|0.2|1|0.5|0.4|5|0|360; (*GB) gi|224081294|ref|XP_002306364.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LJT8|TKI1_ARATH (e_value=2e-28) TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2;; (*TAIR) AT4G39380.1 (e_value=3e-33) | Symbols: | BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:18309628-18311874 REVERSE LENGTH=518;; (*ITAG) Solyc04g051450.2.1 (e_value=2e-105) genomic_reference:SL2.40ch04 gene_region:49711894-49716979 transcript_region:SL2.40ch04:49711894..49716979+ go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 *-*- D7LJ99_ARALY)"; GO:0005515,GO:0003700 NbS00061136g0004.1 protein AED:0.42 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|87; (*ITAG) Solyc04g051450.2.1 (e_value=1e-22) genomic_reference:SL2.40ch04 gene_region:49711894-49716979 transcript_region:SL2.40ch04:49711894..49716979+ go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 *-*- D7LJ99_ARALY)"; GO:0005515,GO:0003700 NbS00019143g0002.1 protein AED:0.12 eAED:0.21 QI:0|0.5|0.33|1|0|0|3|333|210; (*GB) gi|147861256|emb|CAN83987.1| (e_value=1e-73) hypothetical protein VITISV_032602 [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=1e-26) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G17800.1 (e_value=7e-64) | Symbols: | Predicted AT-hook DNA-binding family protein | chr4:9895549-9896427 REVERSE LENGTH=292;; (*ITAG) Solyc01g080960.2.1 (e_value=1e-67) genomic_reference:SL2.40ch01 gene_region:72799732-72800762 transcript_region:SL2.40ch01:72799732..72800762- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR79_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00001337g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|297743427|emb|CBI36294.3| (e_value=4e-178) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SSR6|PPR78_ARATH (e_value=3e-149) Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1;; (*TAIR) AT1G52640.1 (e_value=2e-150) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19608857-19610428 REVERSE LENGTH=523;; (*ITAG) Solyc03g116540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59971465-59972958 transcript_region:SL2.40ch03:59971465..59972958+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJJ1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016805g0005.1 protein AED:0.13 eAED:0.13 QI:155|1|0.8|1|0.5|0.8|5|1082|430; (*GB) gi|255540423|ref|XP_002511276.1| (e_value=1e-118) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FMK7|BT1_ARATH (e_value=2e-92) BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1;; (*TAIR) AT5G63160.1 (e_value=1e-93) | Symbols: BT1 | BTB and TAZ domain protein 1 | chr5:25333485-25335399 REVERSE LENGTH=365;; (*ITAG) Solyc03g111710.2.1 (e_value=1e-155) genomic_reference:SL2.40ch03 gene_region:56425055-56427682 transcript_region:SL2.40ch03:56425055..56427682+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- SPOP_XENTR); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00045432g0001.1 protein AED:0.14 eAED:0.16 QI:12|-1|0|1|-1|1|1|0|128; (*GB) gi|357459819|ref|XP_003600190.1| (e_value=9e-19) hypothetical protein MTR_3g055310 [Medicago truncatula];; (*TAIR) AT3G54070.1 (e_value=2e-18) | Symbols: | Ankyrin repeat family protein | chr3:20021330-20023603 REVERSE LENGTH=574;; (*ITAG) Solyc02g068600.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:33142873-33144717 transcript_region:SL2.40ch02:33142873..33144717- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 **-- Q9FMD0_ARATH)"; GO:0005515 NbS00045432g0003.1 protein AED:0.06 eAED:0.23 QI:55|0|0|1|0|0|3|0|233; (*GB) gi|297789647|ref|XP_002862767.1| (e_value=1e-19) hypothetical protein ARALYDRAFT_333222 [Arabidopsis lyrata subsp. lyrata];; (*ITAG) Solyc05g041590.2.1 (e_value=3e-32) genomic_reference:SL2.40ch05 gene_region:51484839-51486329 transcript_region:SL2.40ch05:51484839..51486329+ go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00048214g0001.1 protein AED:0.28 eAED:0.28 QI:84|-1|0|1|-1|1|1|0|24 NbS00003089g0004.1 protein AED:0.05 eAED:0.05 QI:306|1|1|1|0.66|0.71|7|433|297; (*GB) gi|15228783|ref|NP_191155.1| (e_value=1e-129) haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=2e-20) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1;; (*TAIR) AT3G55960.1 (e_value=2e-132) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:20760797-20762892 REVERSE LENGTH=305;; (*ITAG) Solyc05g052580.2.1 (e_value=4e-170) genomic_reference:SL2.40ch05 gene_region:61938525-61944476 transcript_region:SL2.40ch05:61938525..61944476+ go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00034589g0010.1 protein AED:0.26 eAED:0.26 QI:282|1|1|1|0|0.33|3|375|51 NbS00034589g0002.1 protein AED:0.14 eAED:0.88 QI:0|0|0.5|1|0|0.5|2|417|829; (*GB) gi|359485848|ref|XP_002267947.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIT7|PP442_ARATH (e_value=2e-122) Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1;; (*TAIR) AT5G61990.1 (e_value=1e-123) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24900186-24903110 REVERSE LENGTH=974;; (*ITAG) Solyc03g118280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00034589g0007.1 protein AED:0.15 eAED:0.15 QI:425|1|0.94|1|0.76|0.77|18|207|729; (*GB) gi|359485845|ref|XP_002268128.2| (e_value=0.0) PREDICTED: uncharacterized protein sll1770-like [Vitis vinifera];; (*SWP) sp|P73627|Y1770_SYNY3 (e_value=0.0) Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1;; (*TAIR) AT3G07700.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:2459696-2463241 REVERSE LENGTH=695;; (*ITAG) Solyc07g045420.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55832866-55840808 transcript_region:SL2.40ch07:55832866..55840808- go_terms:GO:0005515,GO:0016709 functional_description:"ABC-1 domain protein (AHRD V1 **-- B0CF41_ACAM1); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005515,GO:0016709 NbS00028984g0001.1 protein AED:0.17 eAED:0.17 QI:965|1|0.8|1|0.25|0.2|5|0|287; (*GB) gi|170676246|gb|ACB30362.1| (e_value=0.0) transcription factor [Capsicum annuum];; (*TAIR) AT5G54630.1 (e_value=7e-131) | Symbols: | zinc finger protein-related | chr5:22192607-22194260 REVERSE LENGTH=472;; (*ITAG) Solyc07g063970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63520045-63522798 transcript_region:SL2.40ch07:63520045..63522798- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00053527g0002.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.33|1|1|1|6|0|440; (*GB) gi|297735686|emb|CBI18373.3| (e_value=2e-139) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13062.2 (e_value=1e-118) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:4184777-4187268 FORWARD LENGTH=440;; (*ITAG) Solyc03g124060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64826113-64832080 transcript_region:SL2.40ch03:64826113..64832080- functional_description:"Membrane related protein-like (AHRD V1 ***- B4FW40_MAIZE); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00018109g0005.1 protein AED:0.16 eAED:0.20 QI:0|0|0|1|0|0|3|0|254; (*GB) gi|255559543|ref|XP_002520791.1| (e_value=1e-126) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G40320.1 (e_value=3e-124) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc06g050920.2.1 (e_value=2e-142) genomic_reference:SL2.40ch06 gene_region:30288370-30291010 transcript_region:SL2.40ch06:30288370..30291010- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbC25322432g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|70; (*GB) gi|156915045|gb|ABU97107.1| (e_value=2e-44) MYB305 protein v1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=2e-45) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G40350.1 (e_value=3e-46) | Symbols: MYB24, AtMYB24 | myb domain protein 24 | chr5:16138703-16140946 REVERSE LENGTH=214;; (*ITAG) Solyc02g067760.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:32454233-32457848 transcript_region:SL2.40ch02:32454233..32457848- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B8YIB6_MIRJA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00005778g0005.1 protein AED:0.02 eAED:0.05 QI:42|0.87|0.88|1|0.75|0.77|9|0|681; (*GB) gi|224142997|ref|XP_002324811.1| (e_value=2e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5SRX1|TM1L2_MOUSE (e_value=5e-12) TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1;; (*TAIR) AT4G32760.2 (e_value=7e-127) | Symbols: | ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=676;; (*ITAG) Solyc08g068370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54667194-54678390 transcript_region:SL2.40ch08:54667194..54678390+ go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00057452g0003.1 protein AED:0.30 eAED:0.30 QI:419|1|1|1|1|1|7|271|447; (*GB) gi|321442626|gb|ADW85801.1| (e_value=0.0) proline transmembrane transporter [Nicotiana tabacum];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=9e-25) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT2G39890.2 (e_value=0.0) | Symbols: PROT1, ATPROT1 | proline transporter 1 | chr2:16656022-16658202 FORWARD LENGTH=442;; (*ITAG) Solyc03g096390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51908885-51913544 transcript_region:SL2.40ch03:51908885..51913544- go_terms:GO:0015193 functional_description:"Amino acid permease-like protein proline transporter-like protein (AHRD V1 **** Q9FJ34_ARATH); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00011423g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|255577683|ref|XP_002529718.1| (e_value=2e-82) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35790.1 (e_value=7e-62) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:15040735-15041976 FORWARD LENGTH=238;; (*ITAG) Solyc05g056090.2.1 (e_value=6e-86) genomic_reference:SL2.40ch05 gene_region:64613030-64615907 transcript_region:SL2.40ch05:64613030..64615907+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009724 Protein of unknown function DUF1301 "; NbS00011423g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|190; (*ITAG) Solyc11g008750.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2931453-2932136 transcript_region:SL2.40ch11:2931453..2932136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000191g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|356513423|ref|XP_003525413.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100805083 [Glycine max];; (*TAIR) AT3G48660.1 (e_value=7e-27) | Symbols: | Protein of unknown function (DUF 3339) | chr3:18029659-18030133 FORWARD LENGTH=89;; (*ITAG) Solyc06g072070.1.1 (e_value=9e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40805954-40806163 transcript_region:SL2.40ch06:40805954..40806163+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00000191g0115.1 protein AED:0.07 eAED:0.07 QI:76|1|0.5|1|0|0|2|220|14 NbS00000191g0118.1 protein AED:0.26 eAED:0.27 QI:438|0.62|0.66|1|0.75|0.77|9|218|933 NbS00000191g0119.1 protein AED:0.09 eAED:0.09 QI:0|1|0.4|1|1|1|5|311|296 NbS00000191g0120.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.5|1|0.8|0.83|6|273|315 NbS00023412g0011.1 protein AED:0.00 eAED:0.00 QI:150|1|0.85|1|0.83|0.71|7|176|381; (*GB) gi|225450145|ref|XP_002279621.1| (e_value=4e-107) PREDICTED: uncharacterized protein LOC100258531 [Vitis vinifera];; (*TAIR) AT3G52110.2 (e_value=4e-76) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages. | chr3:19323925-19325632 REVERSE LENGTH=334;; (*ITAG) Solyc01g087080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73777030-73779472 transcript_region:SL2.40ch01:73777030..73779472+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023412g0010.1 protein AED:0.01 eAED:0.05 QI:0|1|0|1|1|1|2|0|344; (*GB) gi|224059634|ref|XP_002299944.1| (e_value=2e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXV2|MYB46_ARATH (e_value=1e-65) Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1;; (*TAIR) AT3G08500.1 (e_value=1e-71) | Symbols: MYB83, AtMYB83 | myb domain protein 83 | chr3:2576958-2578072 REVERSE LENGTH=343;; (*ITAG) Solyc01g087130.2.1 (e_value=9e-142) genomic_reference:SL2.40ch01 gene_region:73815709-73818027 transcript_region:SL2.40ch01:73815709..73818027+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q70KC5_EUCGU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00023412g0012.1 protein AED:0.20 eAED:0.20 QI:68|1|0.33|1|1|0.66|3|0|83; (*GB) gi|4774163|dbj|BAA77508.1| (e_value=9e-34) F1-ATP synthase delta subunit [Ipomoea batatas];; (*SWP) sp|P22778|ATPO_IPOBA (e_value=5e-35) ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G13450.2 (e_value=2e-29) | Symbols: ATP5 | delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=190;; (*ITAG) Solyc01g087120.2.1 (e_value=7e-39) genomic_reference:SL2.40ch01 gene_region:73799914-73805436 transcript_region:SL2.40ch01:73799914..73805436+ go_terms:GO:0045261 functional_description:"F1-ATP synthase delta subunit (AHRD V1 ***- Q9SXX1_IPOBA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00029426g0103.1 protein AED:0.01 eAED:0.01 QI:23|1|0|1|0|1|2|0|349 NbS00059538g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|653; (*GB) gi|255572593|ref|XP_002527230.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc03g043710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:11197028-11198971 transcript_region:SL2.40ch03:11197028..11198971- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00001034g0006.1 protein AED:0.14 eAED:0.14 QI:243|0.66|0.25|0.75|1|1|4|0|153; (*GB) gi|225427230|ref|XP_002280602.1| (e_value=7e-70) PREDICTED: probable serine/threonine-protein kinase At4g35230 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=2e-50) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=3e-62) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=8e-85) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00049367g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|455; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q42600|C84A1_ARATH (e_value=1e-103) Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1;; (*TAIR) AT4G36220.1 (e_value=1e-104) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc00g247300.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:20037955-20040252 transcript_region:SL2.40ch00:20037955..20040252+ go_terms:GO:0019825,GO:0046424 functional_description:"Cytochrome P450"; GO:0019825,GO:0046424 NbS00003628g0006.1 protein AED:0.28 eAED:0.31 QI:0|1|0|1|1|1|2|0|83; (*GB) gi|225447504|ref|XP_002265343.1| (e_value=9e-38) PREDICTED: uncharacterized protein LOC100245903 isoform 2 [Vitis vinifera];; (*TAIR) AT3G07680.1 (e_value=3e-38) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g006090.1.1 (e_value=5e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:660798-662711 transcript_region:SL2.40ch12:660798..662711- go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00003628g0007.1 protein AED:0.35 eAED:0.35 QI:178|0.5|0.66|0.66|1|1|3|0|104; (*GB) gi|255582868|ref|XP_002532206.1| (e_value=4e-21) NOI, putative [Ricinus communis];; (*TAIR) AT5G55850.1 (e_value=4e-20) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc12g006080.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:658608-660160 transcript_region:SL2.40ch12:658608..660160+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- O22632_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00009593g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|0.66|0|0|3|0|52 NbS00009593g0008.1 protein AED:0.23 eAED:0.24 QI:199|0.66|0.5|1|0.66|0.5|4|0|331; (*GB) gi|64976605|dbj|BAD98313.2| (e_value=0.0) peroxidase [Nicotiana tabacum];; (*SWP) sp|P12437|PERX_SOLTU (e_value=2e-145) Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT5G05340.1 (e_value=2e-59) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc02g079500.2.1 (e_value=9e-145) genomic_reference:SL2.40ch02 gene_region:38618009-38620468 transcript_region:SL2.40ch02:38618009..38620468- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q50LG4_TOBAC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00022356g0009.1 protein AED:0.07 eAED:0.11 QI:0|0|0|1|1|1|2|0|235; (*GB) gi|559237|gb|AAA98492.1| (e_value=1e-57) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=1e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00022356g0008.1 protein AED:0.14 eAED:0.14 QI:46|1|0.5|1|1|1|2|149|25 NbS00022356g0002.1 protein AED:0.27 eAED:0.32 QI:0|0|0|1|1|1|4|0|255; (*ITAG) Solyc03g098630.2.1 (e_value=2e-23) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00022356g0005.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|1|1|4|0|85 NbS00022356g0109.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|323 NbS00022356g0110.1 protein AED:0.35 eAED:0.35 QI:365|1|0.87|1|1|1|8|0|401 NbS00022356g0111.1 protein AED:0.18 eAED:0.18 QI:0|1|0.94|1|0.81|0.94|17|445|624 NbS00059107g0007.1 protein AED:0.24 eAED:0.24 QI:91|0.75|0.6|1|1|1|5|0|466; (*GB) gi|225458637|ref|XP_002282810.1| (e_value=2e-177) PREDICTED: uncharacterized protein LOC100252216 [Vitis vinifera];; (*TAIR) AT5G42930.1 (e_value=9e-154) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467;; (*ITAG) Solyc12g088800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62471287-62476348 transcript_region:SL2.40ch12:62471287..62476348+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00059107g0009.1 protein AED:0.11 eAED:0.11 QI:669|0.71|0.87|1|0.71|0.62|8|408|402; (*GB) gi|359492027|ref|XP_002282806.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=1e-102) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc04g078810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61065866-61070598 transcript_region:SL2.40ch04:61065866..61070598- functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00000871g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0|0.83|0.8|0.66|6|0|231; (*GB) gi|297739219|emb|CBI28870.3| (e_value=5e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YSJ5|AGO16_ORYSJ (e_value=3e-106) Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2;; (*TAIR) AT5G21150.1 (e_value=2e-98) | Symbols: AGO9 | Argonaute family protein | chr5:7193472-7198113 FORWARD LENGTH=896;; (*ITAG) Solyc07g049500.2.1 (e_value=3e-143) genomic_reference:SL2.40ch07 gene_region:57093533-57104122 transcript_region:SL2.40ch07:57093533..57104122- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00000871g0008.1 protein AED:0.37 eAED:0.51 QI:55|0.5|0.14|0.85|0.66|0.85|7|0|184; (*GB) gi|255587084|ref|XP_002534129.1| (e_value=7e-84) eukaryotic translation initiation factor 2c, putative [Ricinus communis];; (*SWP) sp|O48771|AGO6_ARATH (e_value=3e-72) Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2;; (*TAIR) AT2G32940.1 (e_value=2e-73) | Symbols: AGO6 | Argonaute family protein | chr2:13972218-13976856 REVERSE LENGTH=878;; (*ITAG) Solyc07g049500.2.1 (e_value=8e-92) genomic_reference:SL2.40ch07 gene_region:57093533-57104122 transcript_region:SL2.40ch07:57093533..57104122- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00000871g0006.1 protein AED:0.53 eAED:0.60 QI:0|0.5|0.6|0.8|0.25|0.6|5|0|137; (*GB) gi|224135627|ref|XP_002327265.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G35470.2 (e_value=3e-26) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr1:13051636-13054922 REVERSE LENGTH=467;; (*ITAG) Solyc03g033380.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:9216291-9232662 transcript_region:SL2.40ch03:9216291..9232662- go_terms:GO:0008536 functional_description:"Ran-binding protein 9 (AHRD V1 **-* B6UAR9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008536 NbS00000237g0007.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.66|3|0|423; (*GB) gi|225441987|ref|XP_002271218.1| (e_value=5e-179) PREDICTED: uncharacterized protein LOC100260045 [Vitis vinifera];; (*TAIR) AT1G53860.1 (e_value=9e-78) | Symbols: | Remorin family protein | chr1:20107165-20109458 REVERSE LENGTH=442;; (*ITAG) Solyc03g123590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64452687-64455651 transcript_region:SL2.40ch03:64452687..64455651+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KLC3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00000237g0006.1 protein AED:0.05 eAED:0.05 QI:220|1|1|1|0.5|0.33|3|232|580; (*GB) gi|225441979|ref|XP_002265217.1| (e_value=0.0) PREDICTED: pectinesterase 3 [Vitis vinifera];; (*SWP) sp|Q43867|PME1_ARATH (e_value=0.0) Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1;; (*TAIR) AT1G53840.1 (e_value=0.0) | Symbols: ATPME1, PME1 | pectin methylesterase 1 | chr1:20101533-20103458 FORWARD LENGTH=586;; (*ITAG) Solyc03g123620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64472559-64475713 transcript_region:SL2.40ch03:64472559..64475713- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00006251g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|147; (*GB) gi|6626173|gb|AAF19524.1|AF213464_1 (e_value=5e-20) cysteine-rich protein [Nicotiana tabacum];; (*SWP) sp|O24172|ALL6_OLEEU (e_value=1e-13) Pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1;; (*ITAG) Solyc06g084180.2.1 (e_value=2e-24) genomic_reference:SL2.40ch06 gene_region:45671598-45672135 transcript_region:SL2.40ch06:45671598..45672135- functional_description:"Pollen allergen Ole e 6 (AHRD V1 ***- ALL6_OLEEU); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00006251g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|175; (*GB) gi|388510816|gb|AFK43474.1| (e_value=1e-37) unknown [Lotus japonicus];; (*TAIR) AT3G22600.1 (e_value=1e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g065430.2.1 (e_value=3e-43) genomic_reference:SL2.40ch09 gene_region:59128953-59130177 transcript_region:SL2.40ch09:59128953..59130177- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9NBN9_POPTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00012365g0017.1 protein AED:0.10 eAED:0.10 QI:65|1|0.87|1|1|1|8|334|389; (*GB) gi|255558636|ref|XP_002520343.1| (e_value=0.0) replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis];; (*SWP) sp|P40937|RFC5_HUMAN (e_value=7e-132) Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1;; (*TAIR) AT1G77470.1 (e_value=0.0) | Symbols: RFC3, RFC5 | replication factor C subunit 3 | chr1:29112194-29114323 REVERSE LENGTH=369;; (*ITAG) Solyc06g060150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34501247-34507135 transcript_region:SL2.40ch06:34501247..34507135+ go_terms:GO:0032183 functional_description:"Replication factor C subunit 3 (AHRD V1 ***- B6TFI5_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183 NbS00012365g0018.1 protein AED:0.13 eAED:0.14 QI:0|0.16|0.15|1|0.75|0.53|13|170|1612; (*GB) gi|302141793|emb|CBI18996.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=0.0) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00014958g0008.1 protein AED:0.00 eAED:0.00 QI:156|1|1|1|1|1|2|231|134 NbS00001481g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|0.5|0.66|3|0|243; (*GB) gi|225440145|ref|XP_002283240.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100251643 [Vitis vinifera];; (*TAIR) AT3G56680.1 (e_value=1e-36) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353;; (*ITAG) Solyc10g078300.1.1 (e_value=2e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00001481g0007.1 protein AED:0.40 eAED:0.49 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|356571894|ref|XP_003554106.1| (e_value=1e-60) PREDICTED: uncharacterized protein LOC100796710 [Glycine max];; (*TAIR) AT2G40960.1 (e_value=2e-55) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr2:17095637-17097368 FORWARD LENGTH=351;; (*ITAG) Solyc10g078300.1.1 (e_value=8e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00021627g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.85|0.62|0.87|1|1|8|0|277; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=2e-90) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=1e-84) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc12g097070.1.1 (e_value=5e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64052160-64064288 transcript_region:SL2.40ch12:64052160..64064288- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00042913g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255566801|ref|XP_002524384.1| (e_value=7e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G25640.1 (e_value=8e-28) | Symbols: | Protein of unknown function, DUF617 | chr3:9333775-9334578 FORWARD LENGTH=267;; (*ITAG) Solyc05g010010.1.1 (e_value=9e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4215012-4215788 transcript_region:SL2.40ch05:4215012..4215788- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00011698g0004.1 protein AED:0.25 eAED:0.25 QI:434|1|0.75|1|0.66|0.75|4|0|489; (*GB) gi|255568028|ref|XP_002524991.1| (e_value=0.0) r3h domain containing protein, putative [Ricinus communis];; (*SWP) sp|Q15032|R3HD1_HUMAN (e_value=9e-11) R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3;; (*TAIR) AT3G56680.1 (e_value=7e-51) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353;; (*ITAG) Solyc11g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1568263-1573828 transcript_region:SL2.40ch11:1568263..1573828- go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW9_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00018049g0017.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|0.66|0.75|4|483|324; (*GB) gi|3255941|emb|CAA07470.1| (e_value=0.0) PP1A protein [Catharanthus roseus];; (*SWP) sp|P48489|PP1_ORYSJ (e_value=0.0) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2;; (*TAIR) AT2G39840.1 (e_value=0.0) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc09g090060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64955523-64960551 transcript_region:SL2.40ch09:64955523..64960551+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** O81955_CATRO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00018049g0016.1 protein AED:0.15 eAED:0.15 QI:162|0.75|1|1|1|1|5|557|232; (*GB) gi|225433114|ref|XP_002281254.1| (e_value=2e-74) PREDICTED: activating signal cointegrator 1-like [Vitis vinifera];; (*SWP) sp|Q9QXN3|TRIP4_MOUSE (e_value=7e-19) Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2;; (*TAIR) AT2G20410.1 (e_value=2e-67) | Symbols: | RNA-binding ASCH domain protein | chr2:8802561-8804194 FORWARD LENGTH=339;; (*ITAG) Solyc09g090050.2.1 (e_value=1e-85) genomic_reference:SL2.40ch09 gene_region:64947549-64951962 transcript_region:SL2.40ch09:64947549..64951962- functional_description:"Thyroid hormone receptor interactor 4 (Fragment) (AHRD V1 **-- A5YBM5_HORSE); contains Interpro domain(s) IPR007374 ASCH domain "; NbS00018049g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|1|1|1|3|28|574; (*GB) gi|255543292|ref|XP_002512709.1| (e_value=1e-78) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9ZUM9|ASHR2_ARATH (e_value=2e-75) Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana GN=ASHR2 PE=2 SV=3;; (*TAIR) AT2G19640.2 (e_value=2e-76) | Symbols: ASHR2 | ASH1-related protein 2 | chr2:8491401-8492597 FORWARD LENGTH=398;; (*ITAG) Solyc09g090030.1.1 (e_value=5e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64938956-64940095 transcript_region:SL2.40ch09:64938956..64940095- go_terms:GO:0008270 functional_description:"SET and zf-MYND domain-containing protein (AHRD V1 *-*- D8U5L8_VOLCA); contains Interpro domain(s) IPR001214 SET "; GO:0008270 NbS00038209g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=3e-16) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g049150.1.1 (e_value=3e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46025362-46026699 transcript_region:SL2.40ch12:46025362..46026699- functional_description:"Extensin-like protein Ext1 (AHRD V1 ***- Q8VWM5_SOLLC)"; NbS00058621g0005.1 protein AED:0.14 eAED:0.15 QI:0|0.64|0.53|0.93|0.85|0.8|15|0|1535; (*GB) gi|225462062|ref|XP_002269575.1| (e_value=0.0) PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera];; (*SWP) sp|Q7ZXT3|EDC4_XENLA (e_value=2e-12) Enhancer of mRNA-decapping protein 4 OS=Xenopus laevis GN=edc4 PE=2 SV=1;; (*TAIR) AT3G13300.2 (e_value=0.0) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309;; (*ITAG) Solyc07g065950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64749640-64759288 transcript_region:SL2.40ch07:64749640..64759288+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00010179g0003.1 protein AED:0.14 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|147821638|emb|CAN70428.1| (e_value=2e-15) hypothetical protein VITISV_037530 [Vitis vinifera];; (*ITAG) Solyc12g009070.1.1 (e_value=5e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2364568-2364795 transcript_region:SL2.40ch12:2364568..2364795- functional_description:"Unknown Protein (AHRD V1)"; NbS00010179g0002.1 protein AED:0.36 eAED:0.36 QI:600|0.83|0.85|1|0.5|0.42|7|0|84; (*GB) gi|356559951|ref|XP_003548259.1| (e_value=3e-33) PREDICTED: 40S ribosomal protein S3-3-like [Glycine max];; (*SWP) sp|Q9FJA6|RS33_ARATH (e_value=1e-29) 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1;; (*TAIR) AT5G35530.1 (e_value=1e-30) | Symbols: | Ribosomal protein S3 family protein | chr5:13710355-13712192 REVERSE LENGTH=248;; (*ITAG) Solyc07g041310.2.1 (e_value=4e-37) genomic_reference:SL2.40ch07 gene_region:49600647-49604920 transcript_region:SL2.40ch07:49600647..49604920- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TLR8_ELAGV); contains Interpro domain(s) IPR005703 Ribosomal protein S3, eukaryotic/archaeal "; GO:0003735 NbS00010179g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|89; (*GB) gi|224122446|ref|XP_002330483.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g025600.1.1 (e_value=3e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00014007g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.87|0.77|1|0.62|0.66|9|0|471; (*GB) gi|356529401|ref|XP_003533282.1| (e_value=0.0) PREDICTED: abietadienol/abietadienal oxidase-like [Glycine max];; (*SWP) sp|Q50EK6|C72B1_PINTA (e_value=3e-117) Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1;; (*TAIR) AT1G73340.1 (e_value=0.0) | Symbols: | Cytochrome P450 superfamily protein | chr1:27573136-27575273 FORWARD LENGTH=514;; (*ITAG) Solyc03g019870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6765561-6769072 transcript_region:SL2.40ch03:6765561..6769072- go_terms:GO:0016709,GO:0010012 functional_description:"Cytochrome P450"; GO:0016709,GO:0010012 NbS00014007g0006.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|173; (*ITAG) Solyc11g013210.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00014007g0014.1 protein AED:0.26 eAED:0.54 QI:0|0.6|0.16|1|1|1|6|0|193; (*GB) gi|225454563|ref|XP_002263294.1| (e_value=6e-50) PREDICTED: uncharacterized protein LOC100242649 [Vitis vinifera];; (*TAIR) AT1G73350.2 (e_value=2e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:27575683-27577126 REVERSE LENGTH=210; NbS00014007g0017.1 protein AED:0.25 eAED:0.25 QI:120|0.5|0.8|1|0.75|0.8|5|335|284; (*GB) gi|297737199|emb|CBI26400.3| (e_value=2e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G58210.4 (e_value=6e-17) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:23552427-23554045 FORWARD LENGTH=380;; (*ITAG) Solyc03g019840.2.1 (e_value=8e-72) genomic_reference:SL2.40ch03 gene_region:6748869-6754244 transcript_region:SL2.40ch03:6748869..6754244+ functional_description:"Plastid DNA-binding protein (Fragment) (AHRD V1 *-*- Q5DW99_BRANA)"; NbS00014007g0022.1 protein AED:0.28 eAED:0.28 QI:630|0.8|0.72|1|0.8|0.72|11|0|513; (*GB) gi|315258237|gb|ADT91697.1| (e_value=0.0) serine/threonine protein kinase 2 [Nicotiana attenuata];; (*SWP) sp|Q9FJV0|M2K6_ARATH (e_value=1e-79) Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1;; (*TAIR) AT5G40440.1 (e_value=0.0) | Symbols: ATMKK3, MKK3 | mitogen-activated protein kinase kinase 3 | chr5:16182149-16184513 FORWARD LENGTH=520;; (*ITAG) Solyc03g019850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6757647-6762359 transcript_region:SL2.40ch03:6757647..6762359+ go_terms:GO:0005515,GO:0004708 functional_description:"MAP kinase (AHRD V1 *-** D8SYB3_SELML); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004708 NbS00014007g0015.1 protein AED:0.28 eAED:0.28 QI:113|1|1|1|1|1|3|411|123; (*GB) gi|255569027|ref|XP_002525483.1| (e_value=1e-31) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZ89|Y1815_ARATH (e_value=8e-30) UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=1 SV=1;; (*TAIR) AT1G28150.1 (e_value=6e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9835122-9835842 REVERSE LENGTH=123;; (*ITAG) Solyc03g019880.2.1 (e_value=8e-60) genomic_reference:SL2.40ch03 gene_region:6774310-6777201 transcript_region:SL2.40ch03:6774310..6777201+ functional_description:"UPF0426 protein At1g28150, chloroplastic (AHRD V1 ***- Y1815_ARATH)"; NbS00028855g0009.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|0|0.33|3|130|275; (*GB) gi|225446491|ref|XP_002278211.1| (e_value=2e-89) PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera];; (*SWP) sp|B0EXJ8|HTOMT_CATRO (e_value=9e-74) Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=8e-38) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g068550.2.1 (e_value=5e-109) genomic_reference:SL2.40ch01 gene_region:70160716-70161864 transcript_region:SL2.40ch01:70160716..70161864+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00028855g0008.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|329; (*GB) gi|51316214|sp|Q6H9K0.1|PGLR2_PLAAC (e_value=1e-100) RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor;; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=4e-102) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT1G17150.1 (e_value=7e-92) | Symbols: | Pectin lyase-like superfamily protein | chr1:5865707-5867495 FORWARD LENGTH=402;; (*ITAG) Solyc07g041650.1.1 (e_value=2e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:51162465-51164213 transcript_region:SL2.40ch07:51162465..51164213+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBB9_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00028855g0011.1 protein AED:0.31 eAED:0.52 QI:0|0|0.33|1|1|1|3|142|85; (*GB) gi|86438775|emb|CAJ75635.1| (e_value=2e-16) jumonji family protein [Brachypodium sylvaticum];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=6e-15) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT2G34880.1 (e_value=1e-16) | Symbols: MEE27, PKDM7C | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr2:14711880-14716634 REVERSE LENGTH=806;; (*ITAG) Solyc04g009990.2.1 (e_value=3e-18) genomic_reference:SL2.40ch04 gene_region:3303089-3310711 transcript_region:SL2.40ch04:3303089..3310711- go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00047856g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|0|0|3|0|165; (*GB) gi|302143907|emb|CBI23012.3| (e_value=3e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G49250.1 (e_value=8e-30) | Symbols: DMS3, IDN1 | defective in meristem silencing 3 | chr3:18258613-18260803 REVERSE LENGTH=420;; (*ITAG) Solyc03g083210.2.1 (e_value=3e-62) genomic_reference:SL2.40ch03 gene_region:46596166-46611121 transcript_region:SL2.40ch03:46596166..46611121+ go_terms:GO:0005515 functional_description:"At5g24280 (Fragment) (AHRD V1 *-*- Q3YIX0_ARATH)"; GO:0005515 NbS00004704g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|225427506|ref|XP_002263778.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g31840-like [Vitis vinifera];; (*SWP) sp|Q9C6S6|PPR67_ARATH (e_value=8e-148) Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2;; (*TAIR) AT1G31840.1 (e_value=6e-149) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11424006-11426528 FORWARD LENGTH=840;; (*ITAG) Solyc02g021280.1.1 (e_value=6e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13109170-13111449 transcript_region:SL2.40ch02:13109170..13111449- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LLV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00027499g0005.1 protein AED:0.27 eAED:0.27 QI:198|0.81|0.75|1|0.45|0.5|12|191|528; (*GB) gi|349732085|ref|NP_001231830.1| (e_value=0.0) CLB1 [Solanum lycopersicum];; (*SWP) sp|Q5DTI8|ESYT3_MOUSE (e_value=1e-21) Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2;; (*TAIR) AT3G61050.2 (e_value=0.0) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc01g094030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77358539-77370893 transcript_region:SL2.40ch01:77358539..77370893- go_terms:GO:0008289 functional_description:"Syt1 synaptotagmin Ca2+-dependent lipid-binding protein putati (IC) (AHRD V1 *--* Q01EW7_OSTTA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00014697g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225428047|ref|XP_002279232.1| (e_value=1e-42) PREDICTED: SKP1-like protein 1A [Vitis vinifera];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=6e-42) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=4e-43) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc03g112710.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57118059-57118514 transcript_region:SL2.40ch03:57118059..57118514+ go_terms:GO:0005515 functional_description:"SKP1-like protein 1 (AHRD V1 ***- B2LUR1_MALDO); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00003057g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|390|87; (*GB) gi|148537206|dbj|BAF63494.1| (e_value=1e-21) nodule protein Dg93-like protein [Potamogeton distinctus];; (*SWP) sp|Q02921|NO93_SOYBN (e_value=7e-20) Early nodulin-93 OS=Glycine max PE=2 SV=1;; (*ITAG) Solyc12g006680.1.1 (e_value=3e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1144017-1145010 transcript_region:SL2.40ch12:1144017..1145010- functional_description:"Early nodulin 93 protein (AHRD V1 ***- A3FGC9_9ROSI); contains Interpro domain(s) IPR005050 Early nodulin 93 ENOD93 protein "; NbS00003057g0013.1 protein AED:0.10 eAED:0.10 QI:283|1|0.75|1|0|0|4|498|71; (*GB) gi|388521825|gb|AFK48974.1| (e_value=1e-16) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=1e-14) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g006610.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1086428-1087325 transcript_region:SL2.40ch12:1086428..1087325+ functional_description:"Binding protein (AHRD V1 *-*- D7LER5_ARALY)"; NbS00003057g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|148537206|dbj|BAF63494.1| (e_value=5e-20) nodule protein Dg93-like protein [Potamogeton distinctus];; (*SWP) sp|Q02921|NO93_SOYBN (e_value=6e-19) Early nodulin-93 OS=Glycine max PE=2 SV=1;; (*ITAG) Solyc12g006680.1.1 (e_value=3e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1144017-1145010 transcript_region:SL2.40ch12:1144017..1145010- functional_description:"Early nodulin 93 protein (AHRD V1 ***- A3FGC9_9ROSI); contains Interpro domain(s) IPR005050 Early nodulin 93 ENOD93 protein "; NbS00003057g0016.1 protein AED:0.43 eAED:0.43 QI:0|0|0.66|0.66|0|0.33|3|89|122; (*GB) gi|388521825|gb|AFK48974.1| (e_value=3e-38) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=2e-38) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g011060.1.1 (e_value=8e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3931559-3932709 transcript_region:SL2.40ch12:3931559..3932709+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00003057g0004.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|726; (*GB) gi|225423499|ref|XP_002274432.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=0.0) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc01g100790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00034779g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.25|1|0|0.25|4|296|723; (*GB) gi|225455551|ref|XP_002268183.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266895 [Vitis vinifera];; (*TAIR) AT1G62870.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr1:23284220-23286508 REVERSE LENGTH=762;; (*ITAG) Solyc03g007180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1755906-1758173 transcript_region:SL2.40ch03:1755906..1758173+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034779g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.54|0.90|1|1|11|120|469; (*GB) gi|255539695|ref|XP_002510912.1| (e_value=2e-95) FK506-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FLB3|FK153_ARATH (e_value=2e-41) Peptidyl-prolyl cis-trans isomerase FKBP15-3 OS=Arabidopsis thaliana GN=FKBP15-3 PE=2 SV=1;; (*TAIR) AT5G05420.1 (e_value=2e-42) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr5:1604040-1604823 REVERSE LENGTH=143;; (*ITAG) Solyc03g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1743953-1748364 transcript_region:SL2.40ch03:1743953..1748364- go_terms:GO:0005528 functional_description:"FK506-binding protein 4 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 *-** C8V696_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00060712g0004.1 protein AED:0.20 eAED:0.25 QI:53|0.85|0.62|1|0.28|0.25|8|0|524; (*GB) gi|297741494|emb|CBI32626.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGI2|Y1677_ARATH (e_value=9e-152) Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1;; (*TAIR) AT2G37050.3 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15569290-15573477 FORWARD LENGTH=934;; (*ITAG) Solyc09g007280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:872417-881832 transcript_region:SL2.40ch09:872417..881832+ go_terms:GO:0001653,GO:0004675 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0001653,GO:0004675 NbS00015285g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|1|1|1|5|0|327; (*GB) gi|225442009|ref|XP_002271802.1| (e_value=5e-86) PREDICTED: GDSL esterase/lipase 1 [Vitis vinifera];; (*SWP) sp|Q9SSA7|GLIP5_ARATH (e_value=4e-77) GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2;; (*TAIR) AT1G53920.1 (e_value=3e-78) | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137725-20139637 FORWARD LENGTH=385;; (*ITAG) Solyc06g064990.2.1 (e_value=6e-108) genomic_reference:SL2.40ch06 gene_region:36919450-36921085 transcript_region:SL2.40ch06:36919450..36921085+ go_terms:GO:0004064 functional_description:"GDSL esterase/lipase 5 (AHRD V1 ***- GLIP5_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004064 NbS00015285g0007.1 protein AED:0.17 eAED:0.17 QI:261|1|1|1|0.64|0.6|15|458|645; (*GB) gi|225441728|ref|XP_002277339.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase Nek6-like [Vitis vinifera];; (*SWP) sp|Q9LT35|NEK6_ARATH (e_value=3e-150) Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=1e-152) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc03g059250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:25551514-25557664 transcript_region:SL2.40ch03:25551514..25557664+ go_terms:GO:0004711 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00015285g0010.1 protein AED:0.06 eAED:0.09 QI:43|0|0|1|0|0|4|0|418; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=2e-14) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc03g082790.2.1 (e_value=3e-17) genomic_reference:SL2.40ch03 gene_region:46195532-46196454 transcript_region:SL2.40ch03:46195532..46196454- functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbS00015285g0009.1 protein AED:0.31 eAED:0.47 QI:0|0|0|1|0|0|3|0|97 NbS00017869g0006.1 protein AED:0.21 eAED:0.21 QI:9|1|0.71|1|1|1|7|0|504; (*GB) gi|255571408|ref|XP_002526652.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SJG2|Y2296_ARATH (e_value=0.0) Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1;; (*TAIR) AT2G42960.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17868597-17870630 REVERSE LENGTH=494;; (*ITAG) Solyc07g056270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61449169-61452759 transcript_region:SL2.40ch07:61449169..61452759+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017869g0003.1 protein AED:0.37 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=2e-74) potassium channel [Nicotiana paniculata];; (*SWP) sp|Q75HP9|AKT2_ORYSJ (e_value=5e-22) Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1;; (*TAIR) AT4G22200.1 (e_value=2e-16) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=7e-68) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00017869g0008.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|63 NbS00011938g0005.1 protein AED:0.08 eAED:0.08 QI:529|0.75|0.6|1|0.5|0.6|5|0|1112; (*GB) gi|6671484|gb|AAC49301.2| (e_value=0.0) phytochrome F [Solanum lycopersicum];; (*SWP) sp|Q10CQ8|PHYC_ORYSJ (e_value=0.0) Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1;; (*TAIR) AT5G35840.1 (e_value=0.0) | Symbols: PHYC | phytochrome C | chr5:14008049-14011619 FORWARD LENGTH=1111;; (*ITAG) Solyc07g045480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55934576-55945063 transcript_region:SL2.40ch07:55934576..55945063+ go_terms:GO:0005515,GO:0004673 functional_description:"Phytochrome F"; GO:0005515,GO:0004673 NbS00034056g0003.1 protein AED:0.66 eAED:0.66 QI:4|0.33|0.25|0.5|1|1|4|0|68 NbS00024072g0002.1 protein AED:0.01 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|92; (*ITAG) Solyc10g080360.1.1 (e_value=3e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:60977129-60977320 transcript_region:SL2.40ch10:60977129..60977320- functional_description:"Unknown Protein (AHRD V1)"; NbS00024072g0001.1 protein AED:0.06 eAED:0.08 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g054620.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:52016680-52020322 transcript_region:SL2.40ch04:52016680..52020322+ go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00013845g0023.1 protein AED:0.05 eAED:0.07 QI:36|0.90|0.91|1|0.63|0.78|23|328|1124; (*GB) gi|255538982|ref|XP_002510556.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|O59751|KLP6_SCHPO (e_value=2e-27) Kinesin-like protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=klp6 PE=1 SV=1;; (*TAIR) AT1G20060.1 (e_value=3e-137) | Symbols: | ATP binding microtubule motor family protein | chr1:6950723-6956293 REVERSE LENGTH=970;; (*ITAG) Solyc08g042030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:28817061-28822907 transcript_region:SL2.40ch08:28817061..28822907+ go_terms:GO:0007018 functional_description:"Kinesin family protein (AHRD V1 *-*- C0NBI1_AJECG); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00013845g0022.1 protein AED:0.11 eAED:0.11 QI:232|1|1|1|1|1|9|272|292; (*GB) gi|255560125|ref|XP_002521080.1| (e_value=3e-107) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NLW5|XRI1_ARATH (e_value=4e-80) Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2;; (*TAIR) AT5G48720.2 (e_value=3e-81) | Symbols: XRI, XRI1 | x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300;; (*ITAG) Solyc09g082490.2.1 (e_value=5e-180) genomic_reference:SL2.40ch09 gene_region:63598105-63602048 transcript_region:SL2.40ch09:63598105..63602048- go_terms:GO:0005515 functional_description:"Os04g0376600 protein (Fragment) (AHRD V1 *--- C7J0T0_ORYSJ)"; GO:0005515 NbS00013845g0026.1 protein AED:0.12 eAED:0.12 QI:212|0.8|0.87|1|0.73|0.75|16|187|850; (*GB) gi|365189290|dbj|BAL42332.1| (e_value=0.0) Heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P35016|ENPL_CATRO (e_value=0.0) Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1;; (*TAIR) AT4G24190.2 (e_value=0.0) | Symbols: SHD, AtHsp90.7, AtHsp90-7 | Chaperone protein htpG family protein | chr4:12551902-12555851 REVERSE LENGTH=823;; (*ITAG) Solyc04g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63110553-63116088 transcript_region:SL2.40ch04:63110553..63116088- go_terms:GO:0042623,GO:0050750 functional_description:"Chaperone protein htpG (AHRD V1 **-- HTPG_MYCA1); contains Interpro domain(s) IPR015566 Molecular chaperone, heat shock protein, endoplasmin "; GO:0042623,GO:0050750 NbS00013845g0013.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|1|1|2|0|1079; (*GB) gi|255538980|ref|XP_002510555.1| (e_value=1e-153) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24200.1 (e_value=2e-67) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr4:12556927-12559929 REVERSE LENGTH=1000;; (*ITAG) Solyc12g089320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62888275-62891286 transcript_region:SL2.40ch12:62888275..62891286- functional_description:"Bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *-*- Q6Z809_ORYSJ)"; NbS00013845g0020.1 protein AED:0.11 eAED:0.29 QI:0|1|0|1|0|0.5|2|0|141; (*ITAG) Solyc00g019980.2.1 (e_value=4e-49) genomic_reference:SL2.40ch00 gene_region:11803308-11804537 transcript_region:SL2.40ch00:11803308..11804537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013845g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|141; (*ITAG) Solyc00g313030.1.1 (e_value=6e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013845g0024.1 protein AED:0.23 eAED:0.34 QI:0|0|0|0.5|0|0.5|2|0|191; (*GB) gi|57013878|ref|YP_173352.1| (e_value=4e-49) hypothetical protein NitaMp002 [Nicotiana tabacum]; NbS00013845g0029.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|3|0|188; (*GB) gi|290488992|gb|ADD30880.1| (e_value=5e-29) putative RF2 protein [Aucuba japonica];; (*SWP) sp|Q0G9Q1|YCF2_DAUCA (e_value=2e-29) Protein ycf2 OS=Daucus carota GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-25) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc11g028140.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:17021405-17023422 transcript_region:SL2.40ch11:17021405..17023422+ go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00013845g0028.1 protein AED:0.57 eAED:0.84 QI:0|0|0|0.66|0|0|3|0|89 NbS00043850g0008.1 protein AED:0.00 eAED:0.00 QI:366|1|1|1|1|1|2|219|1096; (*GB) gi|359491677|ref|XP_002281604.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360-like [Vitis vinifera];; (*SWP) sp|C0LGJ1|Y1743_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1;; (*TAIR) AT1G74360.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:27954299-27957911 FORWARD LENGTH=1106;; (*ITAG) Solyc03g115610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59310815-59314687 transcript_region:SL2.40ch03:59310815..59314687- go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbS00025091g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|378; (*GB) gi|158962470|dbj|BAF91722.1| (e_value=0.0) putative SHORT-ROOT protein [Ipomoea nil];; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=2e-120) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=1e-121) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc08g014030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3531350-3532606 transcript_region:SL2.40ch08:3531350..3532606+ go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9MY72_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00025091g0005.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|371; (*GB) gi|224133250|ref|XP_002327997.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=4e-103) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=3e-104) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc08g014030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3531350-3532606 transcript_region:SL2.40ch08:3531350..3532606+ go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9MY72_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00002128g0009.1 protein AED:0.10 eAED:0.16 QI:0|0|0|0.66|0.5|0.33|3|0|380; (*GB) gi|224065631|ref|XP_002301893.1| (e_value=4e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|O64798|Y1747_ARATH (e_value=5e-38) Inactive serine/threonine-protein kinase At1g67470 OS=Arabidopsis thaliana GN=At1g67470 PE=2 SV=1;; (*TAIR) AT3G57700.1 (e_value=2e-54) | Symbols: | Protein kinase superfamily protein | chr3:21384917-21385939 FORWARD LENGTH=340;; (*ITAG) Solyc06g060690.2.1 (e_value=3e-89) genomic_reference:SL2.40ch06 gene_region:35101221-35102882 transcript_region:SL2.40ch06:35101221..35102882- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00002128g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|706; (*GB) gi|225464281|ref|XP_002271266.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Vitis vinifera];; (*SWP) sp|Q9LUS3|PP237_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1;; (*TAIR) AT3G16610.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:5656371-5658335 REVERSE LENGTH=654;; (*ITAG) Solyc10g007940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2104479-2106893 transcript_region:SL2.40ch10:2104479..2106893+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L652_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002128g0005.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|81 NbS00002128g0004.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|0|1|0|94 NbS00015735g0004.1 protein AED:0.26 eAED:0.29 QI:0|0|0|0.66|0|0.66|3|0|546; (*GB) gi|225459435|ref|XP_002285825.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera];; (*SWP) sp|P55876|IF5_MAIZE (e_value=3e-118) Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G36730.1 (e_value=5e-116) | Symbols: | Translation initiation factor IF2/IF5 | chr1:13898706-13900025 REVERSE LENGTH=439;; (*ITAG) Solyc02g091210.1.1 (e_value=3e-174) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47167119-47168471 transcript_region:SL2.40ch02:47167119..47168471+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00023685g0002.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0|1|1|1|5|0|790; (*GB) gi|296081053|emb|CBI18334.3| (e_value=1e-92) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G58130.1 (e_value=9e-11) | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:23521190-23523766 REVERSE LENGTH=748;; (*ITAG) Solyc07g042700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53557522-53561470 transcript_region:SL2.40ch07:53557522..53561470- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding region RNP-1 (RNA recognition motif) Pyridoxal-dependent decarboxylase (AHRD V1 **-- A2Q361_MEDTR); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00056337g0005.1 protein AED:0.06 eAED:0.06 QI:30|0.75|0.33|1|0.75|0.55|9|0|875; (*GB) gi|147858097|emb|CAN78862.1| (e_value=0.0) hypothetical protein VITISV_021538 [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=8e-172) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT4G25160.1 (e_value=6e-173) | Symbols: | U-box domain-containing protein kinase family protein | chr4:12903360-12906669 REVERSE LENGTH=835;; (*ITAG) Solyc05g051610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61127063-61130585 transcript_region:SL2.40ch05:61127063..61130585- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00023452g0006.1 protein AED:0.25 eAED:0.25 QI:365|0.88|0.7|1|0.88|0.9|10|0|483; (*GB) gi|225427230|ref|XP_002280602.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At4g35230 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=0.0) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00047987g0011.1 protein AED:0.03 eAED:0.04 QI:118|0.75|0.4|1|1|0.8|5|0|455; (*GB) gi|82568702|dbj|BAE48664.1| (e_value=0.0) Pectate lyase [Prunus mume];; (*SWP) sp|Q9C5M8|PLY18_ARATH (e_value=0.0) Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2;; (*TAIR) AT4G24780.2 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12770631-12772227 REVERSE LENGTH=408;; (*ITAG) Solyc03g111690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56396337-56398488 transcript_region:SL2.40ch03:56396337..56398488+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00047987g0010.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|0.33|0.5|4|0|371; (*GB) gi|113205445|gb|AAW28576.2| (e_value=8e-47) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=7e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00047987g0009.1 protein AED:0.45 eAED:0.57 QI:0|0|0|1|0|0|2|0|80 NbS00029391g0002.1 protein AED:0.57 eAED:0.57 QI:253|0|0.33|0.33|1|1|3|0|125 NbS00029391g0007.1 protein AED:0.09 eAED:0.11 QI:277|0.75|0.64|1|0.56|0.58|17|490|1099; (*GB) gi|297736443|emb|CBI25314.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q32NW2|LENG8_XENLA (e_value=3e-48) Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1;; (*TAIR) AT2G39340.1 (e_value=0.0) | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr2:16424043-16429771 FORWARD LENGTH=1006;; (*ITAG) Solyc05g054910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63845774-63861715 transcript_region:SL2.40ch05:63845774..63861715- functional_description:"SAC3/GANP domain-containing protein (AHRD V1 *--- C1HC97_PARBA); contains Interpro domain(s) IPR005062 SAC3/GANP/Nin1/mts3/eIF-3 p25 "; NbS00029391g0006.1 protein AED:0.26 eAED:0.52 QI:0|0|0|1|0|0|3|0|75; (*ITAG) Solyc05g054900.2.1 (e_value=2e-17) genomic_reference:SL2.40ch05 gene_region:63843911-63845027 transcript_region:SL2.40ch05:63843911..63845027+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6T8E0_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00029817g0015.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|554; (*GB) gi|224134727|ref|XP_002327474.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLW0|Y5241_ARATH (e_value=7e-171) Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1;; (*TAIR) AT5G24010.1 (e_value=5e-172) | Symbols: | Protein kinase superfamily protein | chr5:8113910-8116384 FORWARD LENGTH=824;; (*ITAG) Solyc11g072910.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00029817g0010.1 protein AED:0.19 eAED:0.22 QI:104|0.5|0.28|0.85|0.5|0.42|7|0|239; (*GB) gi|297829758|ref|XP_002882761.1| (e_value=6e-63) hypothetical protein ARALYDRAFT_897410 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G12010.1 (e_value=7e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:3821337-3825537 FORWARD LENGTH=682;; (*ITAG) Solyc03g053000.2.1 (e_value=3e-70) genomic_reference:SL2.40ch03 gene_region:19607617-19609724 transcript_region:SL2.40ch03:19607617..19609724+ functional_description:"Colon cancer-associated protein Mic1-like containing protein expressed (AHRD V1 ***- Q338I5_ORYSJ)"; NbS00029817g0011.1 protein AED:0.32 eAED:0.34 QI:39|1|0.87|1|1|1|8|0|548; (*GB) gi|255587909|ref|XP_002534438.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12010.1 (e_value=8e-97) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:3821337-3825537 FORWARD LENGTH=682;; (*ITAG) Solyc03g053010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19619550-19627679 transcript_region:SL2.40ch03:19619550..19627679+ functional_description:"Colon cancer-associated protein Mic1-like containing protein expressed (AHRD V1 **-- Q338I5_ORYSJ); contains Interpro domain(s) IPR009755 Colon cancer-associated Mic1-like "; NbS00029817g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|224134727|ref|XP_002327474.1| (e_value=1e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLW0|Y5241_ARATH (e_value=4e-139) Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1;; (*TAIR) AT5G24010.1 (e_value=3e-140) | Symbols: | Protein kinase superfamily protein | chr5:8113910-8116384 FORWARD LENGTH=824;; (*ITAG) Solyc03g059070.2.1 (e_value=3e-172) genomic_reference:SL2.40ch03 gene_region:24946485-24949142 transcript_region:SL2.40ch03:24946485..24949142+ go_terms:GO:0005515,GO:0004674 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0005515,GO:0004674 NbS00049695g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|252; (*GB) gi|311700624|gb|ADQ00389.1| (e_value=2e-104) PURPLE HAZE [Petunia x hybrida];; (*SWP) sp|Q9FNV9|MY113_ARATH (e_value=1e-59) Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1;; (*TAIR) AT1G66370.1 (e_value=1e-60) | Symbols: MYB113, AtMYB113 | myb domain protein 113 | chr1:24753634-24754604 FORWARD LENGTH=246;; (*ITAG) Solyc10g086270.1.1 (e_value=3e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64469193-64470142 transcript_region:SL2.40ch10:64469193..64470142- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- A9YY82_SOLTU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00049695g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|275|125; (*GB) gi|255556858|ref|XP_002519462.1| (e_value=5e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G36835.1 (e_value=3e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15449839-15451307 REVERSE LENGTH=124;; (*ITAG) Solyc10g083910.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62945009-62947449 transcript_region:SL2.40ch10:62945009..62947449- functional_description:"Unknown Protein (AHRD V1)"; NbS00042793g0009.1 protein AED:0.07 eAED:0.07 QI:179|1|1|1|1|1|5|0|181; (*GB) gi|225425744|ref|XP_002276441.1| (e_value=6e-101) PREDICTED: probable peptidyl-prolyl cis-trans isomerase isoform 1 [Vitis vinifera];; (*SWP) sp|Q8G0J9|PPI1_BRUSU (e_value=4e-19) Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis biovar 1 (strain 1330) GN=ppi PE=3 SV=1;; (*TAIR) AT1G26940.1 (e_value=4e-96) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9343193-9344962 FORWARD LENGTH=226;; (*ITAG) Solyc01g010590.2.1 (e_value=2e-121) genomic_reference:SL2.40ch01 gene_region:5594931-5600715 transcript_region:SL2.40ch01:5594931..5600715+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase A (AHRD V1 ***- B6TSE8_MAIZE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00042793g0007.1 protein AED:0.60 eAED:0.60 QI:6|0.5|0.33|0.66|0|0|3|61|44 NbS00042793g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|0.66|1|1|3|0|266; (*GB) gi|48209882|gb|AAT40488.1| (e_value=2e-110) putative DNA-binding protein [Solanum demissum];; (*SWP) sp|Q8LC03|ATB13_ARATH (e_value=1e-87) Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2;; (*TAIR) AT1G69780.1 (e_value=8e-89) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294;; (*ITAG) Solyc05g007180.2.1 (e_value=1e-112) genomic_reference:SL2.40ch05 gene_region:1796893-1799609 transcript_region:SL2.40ch05:1796893..1799609+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0043565 NbC25622266g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|350535573|ref|NP_001234713.1| (e_value=3e-51) TK1-like deoxyribonucleoside kinase [Solanum lycopersicum];; (*SWP) sp|O81263|KITH_ORYSJ (e_value=2e-36) Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2;; (*TAIR) AT5G23070.1 (e_value=4e-34) | Symbols: | Thymidine kinase | chr5:7741979-7742827 FORWARD LENGTH=282;; (*ITAG) Solyc11g065760.1.1 (e_value=5e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48443570-48446534 transcript_region:SL2.40ch11:48443570..48446534- go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- Q71F77_SOLLC); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00007112g0004.1 protein AED:0.01 eAED:0.01 QI:139|1|1|1|0.75|0.6|5|83|377; (*GB) gi|197322805|gb|ACH69153.1| (e_value=0.0) actin [Nicotiana tabacum];; (*SWP) sp|Q05214|ACT1_TOBAC (e_value=0.0) Actin OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc05g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63549262-63552429 transcript_region:SL2.40ch05:63549262..63552429- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00012736g0013.1 protein AED:0.28 eAED:0.28 QI:259|0.88|0.9|1|0.88|0.9|10|346|359; (*GB) gi|224081471|ref|XP_002306423.1| (e_value=4e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W2B8|SAT4_ARATH (e_value=5e-146) Serine acetyltransferase 4 OS=Arabidopsis thaliana GN=SAT4 PE=1 SV=1;; (*TAIR) AT4G35640.1 (e_value=4e-147) | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltransferase 3;2 | chr4:16905755-16907977 REVERSE LENGTH=355;; (*ITAG) Solyc02g082850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41072144-41078100 transcript_region:SL2.40ch02:41072144..41078100- go_terms:GO:0009001 functional_description:"Serine O-acetyltransferase (AHRD V1 **** Q21LT3_SACD2); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00012736g0014.1 protein AED:0.27 eAED:0.27 QI:184|0.75|0.8|1|0.5|0.6|5|263|347; (*GB) gi|3790190|emb|CAA74777.1| (e_value=0.0) NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q8LFC0|IDH1_ARATH (e_value=0.0) Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2;; (*TAIR) AT4G35260.1 (e_value=0.0) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367;; (*ITAG) Solyc02g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41089620-41095431 transcript_region:SL2.40ch02:41089620..41095431+ go_terms:GO:0004449,GO:0008270 functional_description:"Isocitrate dehydrogenase (AHRD V1 **** A3LYS8_PICST); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0004449,GO:0008270 NbS00026574g0003.1 protein AED:0.45 eAED:0.82 QI:0|0|0|1|0|0|2|0|62 NbS00006899g0018.1 protein AED:0.29 eAED:0.37 QI:751|0.66|0.75|1|0|0|4|756|184; (*GB) gi|147799695|emb|CAN77325.1| (e_value=3e-15) hypothetical protein VITISV_033922 [Vitis vinifera];; (*ITAG) Solyc05g055970.2.1 (e_value=1e-25) genomic_reference:SL2.40ch05 gene_region:64527283-64529803 transcript_region:SL2.40ch05:64527283..64529803- functional_description:"Accelerated cell death 6 (Fragment) (AHRD V1 *--- D9IWX3_ARATH)"; NbS00006899g0014.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0.5|0.66|3|0|357; (*GB) gi|359478091|ref|XP_002270351.2| (e_value=1e-46) PREDICTED: ankyrin-1-like [Vitis vinifera];; (*SWP) sp|Q502K3|ANR52_DANRE (e_value=4e-14) Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1;; (*TAIR) AT1G03670.1 (e_value=2e-32) | Symbols: | ankyrin repeat family protein | chr1:914222-916222 REVERSE LENGTH=616;; (*ITAG) Solyc07g061750.2.1 (e_value=5e-127) genomic_reference:SL2.40ch07 gene_region:61932745-61935454 transcript_region:SL2.40ch07:61932745..61935454+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00006899g0003.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|296087905|emb|CBI35188.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G04730.1 (e_value=1e-13) | Symbols: | Ankyrin-repeat containing protein | chr5:1364101-1367303 REVERSE LENGTH=603;; (*ITAG) Solyc05g055960.1.1 (e_value=1e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64526682-64527197 transcript_region:SL2.40ch05:64526682..64527197- functional_description:"Unknown Protein (AHRD V1)"; NbS00006899g0017.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|1|1|3|0|64 NbS00006899g0013.1 protein AED:0.10 eAED:0.10 QI:313|0.8|0.83|1|0.8|0.66|6|343|500; (*GB) gi|225445619|ref|XP_002262668.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Vitis vinifera];; (*SWP) sp|Q9LNG5|PPP7L_ARATH (e_value=3e-36) Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1;; (*TAIR) AT2G04865.1 (e_value=1e-151) | Symbols: | Aminotransferase-like, plant mobile domain family protein | chr2:1712149-1714599 FORWARD LENGTH=667;; (*ITAG) Solyc05g056010.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64545461-64548066 transcript_region:SL2.40ch05:64545461..64548066- functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 **-- D7U0L7_VITVI); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00009434g0011.1 protein AED:0.01 eAED:0.01 QI:214|1|1|1|0.4|0.5|6|359|162; (*GB) gi|225428098|ref|XP_002280561.1| (e_value=8e-17) PREDICTED: uncharacterized protein LOC100245308 [Vitis vinifera];; (*ITAG) Solyc05g050720.2.1 (e_value=6e-67) genomic_reference:SL2.40ch05 gene_region:59988849-59994672 transcript_region:SL2.40ch05:59988849..59994672- go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005807 SecE subunit of protein translocation complex "; GO:0016021 NbS00009434g0017.1 protein AED:0.04 eAED:0.04 QI:75|0.66|0.75|1|0.66|0.5|4|143|129; (*GB) gi|73808794|gb|AAZ85394.1| (e_value=6e-78) cytosolic nucleoside diphosphate kinase [Solanum chacoense];; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=3e-79) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=3e-69) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00009434g0016.1 protein AED:0.37 eAED:0.37 QI:0|1|0.8|1|0.75|0.6|5|0|280; (*GB) gi|45238341|emb|CAD27343.1| (e_value=1e-168) protein kinase 2 beta chain [Nicotiana tabacum];; (*SWP) sp|O80507|CSK2E_ARATH (e_value=3e-142) Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1;; (*TAIR) AT2G44680.1 (e_value=2e-143) | Symbols: CKB4 | casein kinase II beta subunit 4 | chr2:18426898-18428166 REVERSE LENGTH=283;; (*ITAG) Solyc05g050680.2.1 (e_value=4e-166) genomic_reference:SL2.40ch05 gene_region:59944294-59953427 transcript_region:SL2.40ch05:59944294..59953427- go_terms:GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0019887 NbS00009434g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.66|1|0.5|0.33|3|0|217; (*GB) gi|76160970|gb|ABA40448.1| (e_value=6e-85) fructokinase 2-like protein [Solanum tuberosum];; (*SWP) sp|Q96288|STO_ARATH (e_value=1e-63) Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1;; (*TAIR) AT1G06040.1 (e_value=8e-65) | Symbols: STO | B-box zinc finger family protein | chr1:1828662-1829659 REVERSE LENGTH=248;; (*ITAG) Solyc06g073180.2.1 (e_value=2e-83) genomic_reference:SL2.40ch06 gene_region:41479688-41483031 transcript_region:SL2.40ch06:41479688..41483031+ go_terms:GO:0003700,GO:0019904 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0003700,GO:0019904 NbS00009434g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|373; (*GB) gi|357454491|ref|XP_003597526.1| (e_value=2e-130) Receptor kinase [Medicago truncatula];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-35) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT3G59510.1 (e_value=2e-125) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:21988453-21989712 REVERSE LENGTH=419;; (*ITAG) Solyc05g050700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:59982950-59984185 transcript_region:SL2.40ch05:59982950..59984185+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00009434g0019.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|107 NbS00028371g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|225438213|ref|XP_002265055.1| (e_value=4e-126) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera];; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=9e-22) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT3G49750.1 (e_value=2e-109) | Symbols: AtRLP44, RLP44 | receptor like protein 44 | chr3:18450604-18451428 REVERSE LENGTH=274;; (*ITAG) Solyc02g092040.1.1 (e_value=6e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47827762-47828565 transcript_region:SL2.40ch02:47827762..47828565- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00024228g0008.1 protein AED:0.15 eAED:0.15 QI:70|0.14|0.25|0.87|0.57|0.5|8|0|869; (*GB) gi|15418709|gb|AAG31013.1| (e_value=0.0) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=5e-93) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46730.1 (e_value=2e-42) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc09g098130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00024228g0012.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|2|0|241; (*GB) gi|15418709|gb|AAG31013.1| (e_value=5e-55) tospovirus resistance protein A [Solanum lycopersicum];; (*ITAG) Solyc09g064680.1.1 (e_value=2e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57622457-57624959 transcript_region:SL2.40ch09:57622457..57624959- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006915 NbS00014625g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|114 NbS00014625g0002.1 protein AED:0.41 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|162; (*ITAG) Solyc11g006240.1.1 (e_value=2e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:992150-992518 transcript_region:SL2.40ch11:992150..992518- functional_description:"Unknown Protein (AHRD V1)"; NbS00061352g0006.1 protein AED:0.10 eAED:0.10 QI:138|1|1|1|0|0.5|2|525|159; (*GB) gi|224077328|ref|XP_002305213.1| (e_value=9e-28) high mobility group family [Populus trichocarpa];; (*SWP) sp|Q00423|HMGYA_SOYBN (e_value=2e-18) HMG-Y-related protein A OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G14900.1 (e_value=3e-19) | Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204;; (*ITAG) Solyc05g051290.2.1 (e_value=3e-45) genomic_reference:SL2.40ch05 gene_region:60727691-60729288 transcript_region:SL2.40ch05:60727691..60729288- go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group family (AHRD V1 *--- B9H3A3_POPTR); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0005634,GO:0003677 NbS00061352g0007.1 protein AED:0.07 eAED:0.07 QI:370|1|1|1|1|1|6|310|438; (*GB) gi|1087073|gb|AAB34987.1| (e_value=0.0) calmodulin-binding heat-shock protein [Nicotiana tabacum];; (*TAIR) AT5G37710.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14979159-14981400 FORWARD LENGTH=436;; (*ITAG) Solyc05g051280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60717214-60723777 transcript_region:SL2.40ch05:60717214..60723777+ go_terms:GO:0005516 functional_description:"Calmodulin-binding heat-shock protein (AHRD V1 **-* Q41251_TOBAC); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00061778g0001.1 protein AED:0.05 eAED:0.15 QI:0|0|0|1|0|0|2|0|109 NbS00033880g0005.1 protein AED:0.02 eAED:0.02 QI:108|0.83|0.85|1|0.83|0.71|7|377|529; (*GB) gi|255563941|ref|XP_002522970.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064420.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63810958-63815914 transcript_region:SL2.40ch07:63810958..63815914+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00033880g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.2|1|0.75|0.8|5|0|396; (*GB) gi|255563941|ref|XP_002522970.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63821907-63828376 transcript_region:SL2.40ch07:63821907..63828376+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00059372g0003.1 protein AED:0.06 eAED:0.06 QI:101|1|0.5|1|1|1|2|0|98; (*GB) gi|363497938|gb|AEW24432.1| (e_value=2e-21) late embryogenesis abundant protein 3L-1 [Camellia sinensis];; (*ITAG) Solyc08g074720.2.1 (e_value=2e-28) genomic_reference:SL2.40ch08 gene_region:56031417-56032018 transcript_region:SL2.40ch08:56031417..56032018+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant 3 family protein (AHRD V1 ***- D7KBC5_ARALY); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 "; GO:0006950 NbS00016918g0001.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0|0.66|1|1|3|0|90; (*GB) gi|358248068|ref|NP_001239805.1| (e_value=5e-29) uncharacterized protein LOC100814113 [Glycine max];; (*TAIR) AT4G14145.1 (e_value=9e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8152499-8153091 REVERSE LENGTH=134;; (*ITAG) Solyc03g007490.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:2070713-2072278 transcript_region:SL2.40ch03:2070713..2072278+ functional_description:"Kinesin like protein (AHRD V1 ***- O23274_ARATH)"; NbS00016918g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|0.5|0.33|3|0|790; (*GB) gi|255587116|ref|XP_002534143.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q55874|Y103_SYNY3 (e_value=7e-15) Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=4 SV=1;; (*TAIR) AT2G38970.1 (e_value=0.0) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692;; (*ITAG) Solyc05g056140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64680558-64685370 transcript_region:SL2.40ch05:64680558..64685370- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00005457g0204.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|0.66|0.75|4|270|155 NbS00005457g0205.1 protein AED:0.12 eAED:0.20 QI:0|0|0|1|0|0|3|0|168 NbC25794395g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|3|0|224; (*GB) gi|291165310|gb|ADD81206.1| (e_value=3e-134) sinapyl alcohol dehydrogenase-like 3 [Nicotiana tabacum];; (*SWP) sp|Q2KNL6|GEDH1_OCIBA (e_value=8e-103) Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1;; (*TAIR) AT4G37980.1 (e_value=6e-88) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011340.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00018955g0005.1 protein AED:0.17 eAED:0.17 QI:208|0.66|0.7|1|0.44|0.6|10|0|409; (*GB) gi|224112669|ref|XP_002316256.1| (e_value=3e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=1e-150) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=1e-151) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc05g052910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62226323-62233083 transcript_region:SL2.40ch05:62226323..62233083- go_terms:GO:0008270 functional_description:"Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00011405g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|225461712|ref|XP_002283237.1| (e_value=4e-175) PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Vitis vinifera];; (*SWP) sp|Q9MAG8|PPR79_ARATH (e_value=2e-135) Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1;; (*TAIR) AT1G53330.1 (e_value=1e-136) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19896027-19897442 FORWARD LENGTH=471;; (*ITAG) Solyc12g014330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5146927-5148339 transcript_region:SL2.40ch12:5146927..5148339+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KKH1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008615g0004.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|1|1|2|0|422; (*GB) gi|365222896|gb|AEW69800.1| (e_value=1e-177) Hop-interacting protein THI038 [Solanum lycopersicum];; (*SWP) sp|Q943I6|STOP1_ORYSJ (e_value=4e-68) Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1;; (*TAIR) AT1G34370.1 (e_value=7e-69) | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12551002-12552501 FORWARD LENGTH=499;; (*ITAG) Solyc04g056320.1.1 (e_value=3e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53214442-53215563 transcript_region:SL2.40ch04:53214442..53215563+ go_terms:GO:0003700,GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *-** D7KK61_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0008270 NbS00020732g0008.1 protein AED:0.48 eAED:0.48 QI:0|0.42|0.29|0.44|0.96|0.96|27|0|992; (*GB) gi|359488185|ref|XP_002279980.2| (e_value=0.0) PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera];; (*SWP) sp|Q86XA9|HTR5A_HUMAN (e_value=2e-37) HEAT repeat-containing protein 5A OS=Homo sapiens GN=HEATR5A PE=1 SV=2;; (*TAIR) AT1G67140.3 (e_value=0.0) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2223;; (*ITAG) Solyc02g085810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00030823g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.76|0.96|0.83|0.84|25|186|1465; (*GB) gi|225437885|ref|XP_002265367.1| (e_value=0.0) PREDICTED: CLIP-associating protein-like [Vitis vinifera];; (*SWP) sp|A1A5G0|CLAP1_XENTR (e_value=2e-28) CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1;; (*TAIR) AT2G20190.1 (e_value=0.0) | Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439;; (*ITAG) Solyc09g063030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56576631-56592238 transcript_region:SL2.40ch09:56576631..56592238- go_terms:GO:0005488 functional_description:"CLIP-associating protein 1-like (AHRD V1 *--- Q6KAI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00012865g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|174 NbS00012865g0002.1 protein AED:0.11 eAED:0.13 QI:303|0.85|0.85|1|0.95|0.90|21|478|768; (*GB) gi|350539411|ref|NP_001234648.1| (e_value=0.0) GcpE [Solanum lycopersicum];; (*SWP) sp|F4K0E8|ISPG_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1;; (*TAIR) AT5G60600.1 (e_value=0.0) | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr5:24359447-24363274 FORWARD LENGTH=741;; (*ITAG) Solyc11g069380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51063324-51069419 transcript_region:SL2.40ch11:51063324..51069419+ go_terms:GO:0044237,GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (AHRD V1 ***- A9ZN14_HEVBR); contains Interpro domain(s) IPR017178 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical "; GO:0044237,GO:0055114 NbS00014740g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|2894118|emb|CAA05999.1| (e_value=3e-49) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=2e-21) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT3G25290.2 (e_value=1e-24) | Symbols: | Auxin-responsive family protein | chr3:9208955-9210353 FORWARD LENGTH=393;; (*ITAG) Solyc06g083140.2.1 (e_value=1e-42) genomic_reference:SL2.40ch06 gene_region:44972908-44974194 transcript_region:SL2.40ch06:44972908..44974194- go_terms:GO:0005201 functional_description:"Auxin-induced in root cultures protein 12 (AHRD V1 **-- AIR12_ARATH); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; GO:0005201 NbS00030157g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.83|0.71|0.85|1|1|7|0|195; (*GB) gi|384081612|ref|NP_001244910.1| (e_value=2e-105) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Solanum lycopersicum];; (*SWP) sp|Q8GW29|LOG7_ARATH (e_value=3e-103) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2;; (*TAIR) AT5G06300.1 (e_value=2e-104) | Symbols: | Putative lysine decarboxylase family protein | chr5:1922042-1925278 REVERSE LENGTH=217;; (*ITAG) Solyc10g082020.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62254561-62258072 transcript_region:SL2.40ch10:62254561..62258072+ go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00030157g0005.1 protein AED:0.27 eAED:0.58 QI:0|0|0|1|0|0|2|0|150 NbS00010257g0005.1 protein AED:0.20 eAED:0.20 QI:12|1|1|1|1|1|2|10|113; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=4e-36) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=1e-29) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=4e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00010257g0101.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|130 NbS00021670g0007.1 protein AED:0.34 eAED:0.34 QI:139|1|0.5|1|0|0|2|74|39 NbS00021670g0006.1 protein AED:0.28 eAED:0.30 QI:27|0.64|0.6|1|0.28|0.33|15|394|745; (*ITAG) Solyc09g005140.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:130530-142052 transcript_region:SL2.40ch09:130530..142052- functional_description:"Unknown Protein (AHRD V1)"; NbS00003592g0002.1 protein AED:0.22 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|297803704|ref|XP_002869736.1| (e_value=7e-45) hypothetical protein ARALYDRAFT_492450 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G24130.1 (e_value=7e-47) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc08g083090.1.1 (e_value=7e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62825827-62826291 transcript_region:SL2.40ch08:62825827..62826291+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00003592g0007.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|196; (*GB) gi|224131122|ref|XP_002321006.1| (e_value=5e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-15) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G62820.1 (e_value=3e-40) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr3:23229782-23230366 FORWARD LENGTH=194;; (*ITAG) Solyc08g006690.1.1 (e_value=4e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1257744-1258328 transcript_region:SL2.40ch08:1257744..1258328+ go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** D7L333_ARALY); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00003592g0006.1 protein AED:0.32 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|62; (*ITAG) Solyc08g006680.2.1 (e_value=2e-13) genomic_reference:SL2.40ch08 gene_region:1252318-1257044 transcript_region:SL2.40ch08:1252318..1257044+ go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B4B3T5_9CHRO); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00020298g0004.1 protein AED:0.01 eAED:0.01 QI:117|1|1|1|0|0.33|3|216|401; (*GB) gi|119391218|dbj|BAF41989.1| (e_value=4e-160) CUP-SHAPED COTYLEDON3 [Petunia x hybrida];; (*SWP) sp|Q9S851|NAC31_ARATH (e_value=6e-96) Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1;; (*TAIR) AT1G76420.1 (e_value=4e-97) | Symbols: CUC3, NAC368, ANAC031 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:28672029-28673835 REVERSE LENGTH=334;; (*ITAG) Solyc07g062840.2.1 (e_value=3e-81) genomic_reference:SL2.40ch07 gene_region:62708889-62711033 transcript_region:SL2.40ch07:62708889..62711033+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1D6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00023750g0003.1 protein AED:0.12 eAED:0.11 QI:384|1|0.92|1|1|1|14|546|1133; (*GB) gi|356525568|ref|XP_003531396.1| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 6 [UDP-forming]-like [Glycine max];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc11g005560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:419067-425651 transcript_region:SL2.40ch11:419067..425651+ go_terms:GO:0016020,GO:0008270 functional_description:"Cellulose synthase (AHRD V1 ***- B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020,GO:0008270 NbS00034332g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|339; (*GB) gi|115476688|ref|NP_001061940.1| (e_value=1e-90) Os08g0450100 [Oryza sativa Japonica Group];; (*SWP) sp|Q43062|PME_PRUPE (e_value=7e-92) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G26440.1 (e_value=2e-88) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11247407-11249407 FORWARD LENGTH=547;; (*ITAG) Solyc10g049370.1.1 (e_value=6e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:40968120-40969318 transcript_region:SL2.40ch10:40968120..40969318+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9HAG5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00001447g0010.1 protein AED:0.15 eAED:0.15 QI:155|0.83|0.85|1|1|1|7|205|388; (*GB) gi|9794868|gb|AAF98368.1|AF158027_1 (e_value=0.0) patatin-like protein 1 [Nicotiana tabacum];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=7e-109) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=2e-171) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61361989-61363939 transcript_region:SL2.40ch04:61361989..61363939- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00001447g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.66|1|0.8|0.66|6|60|346; (*GB) gi|356562289|ref|XP_003549404.1| (e_value=5e-163) PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Glycine max];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=7e-97) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=4e-138) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079240.2.1 (e_value=6e-157) genomic_reference:SL2.40ch04 gene_region:61350800-61354292 transcript_region:SL2.40ch04:61350800..61354292- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00010861g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|104; (*GB) gi|377580874|gb|AFB70575.1| (e_value=2e-19) NADH dehydrogenase subunit 7, partial (chloroplast) [Pereskia sacharosa];; (*SWP) sp|Q06R74|NDHH_JASNU (e_value=9e-21) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Jasminum nudiflorum GN=ndhH PE=3 SV=1;; (*ITAG) ATCG01110.1 (e_value=2e-19) | Symbols: NDHH | NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393;; (*ITAG) Solyc08g022170.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:12709979-12710386 transcript_region:SL2.40ch08:12709979..12710386- functional_description:"NADH quinone oxidoreductase subunit 7 (AHRD V1 ***- D2BHX7_DEHSV)"; NbS00014328g0009.1 protein AED:0.44 eAED:0.44 QI:0|0|0.33|0.33|0.5|1|3|511|129 NbS00014328g0008.1 protein AED:0.08 eAED:0.10 QI:0|0.42|0.37|1|0.71|0.62|8|0|1130; (*GB) gi|224090675|ref|XP_002309053.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=4e-41) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT2G37670.1 (e_value=3e-155) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15797384-15800536 REVERSE LENGTH=903;; (*ITAG) Solyc09g010720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4029691-4033379 transcript_region:SL2.40ch09:4029691..4033379- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00024637g0005.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|1|1|3|0|149 NbS00024637g0008.1 protein AED:0.23 eAED:0.24 QI:0|1|0.5|1|1|1|2|0|189; (*GB) gi|255551819|ref|XP_002516955.1| (e_value=3e-69) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G06840.1 (e_value=3e-49) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49170.1); Has 33 Blast hits to 33 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2156930-2157624 FORWARD LENGTH=187;; (*ITAG) Solyc01g066440.2.1 (e_value=7e-93) genomic_reference:SL2.40ch01 gene_region:66737901-66739053 transcript_region:SL2.40ch01:66737901..66739053+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030186g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=0.0) malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZWR8|ANTA_GENTR (e_value=8e-122) Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT1G03940.1 (e_value=4e-78) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:1009542-1010951 REVERSE LENGTH=469;; (*ITAG) Solyc10g008680.1.1 (e_value=5e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00030186g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|255540655|ref|XP_002511392.1| (e_value=3e-153) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LR72|PPR7_ARATH (e_value=2e-132) Putative pentatricopeptide repeat-containing protein At1g03510 OS=Arabidopsis thaliana GN=PCMP-E3 PE=3 SV=1;; (*TAIR) AT1G03510.1 (e_value=2e-133) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:876258-877547 REVERSE LENGTH=429;; (*ITAG) Solyc10g008590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2688038-2689324 transcript_region:SL2.40ch10:2688038..2689324- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCF7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00030186g0001.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|1|1|2|0|294; (*GB) gi|224055111|ref|XP_002298418.1| (e_value=3e-46) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=2e-22) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=1e-23) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc10g008580.1.1 (e_value=5e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbC25535931g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|203; (*GB) gi|255549820|ref|XP_002515961.1| (e_value=1e-110) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LIG0|Y3136_ARATH (e_value=1e-109) Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1;; (*TAIR) AT3G21360.1 (e_value=1e-110) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330;; (*ITAG) Solyc03g121040.2.1 (e_value=4e-135) genomic_reference:SL2.40ch03 gene_region:63326457-63329185 transcript_region:SL2.40ch03:63326457..63329185+ go_terms:GO:0055114 functional_description:"Taurine catabolism dioxygenase TauD/TfdA family (AHRD V1 ***- C4AZM2_BURMA); contains Interpro domain(s) IPR003819 Taurine catabolism dioxygenase TauD/TfdA "; GO:0055114 NbS00031144g0007.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|1|2|0|307; (*GB) gi|225461342|ref|XP_002284614.1| (e_value=2e-148) PREDICTED: uncharacterized protein LOC100246927 [Vitis vinifera];; (*TAIR) AT5G54370.1 (e_value=6e-117) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:22075334-22076567 FORWARD LENGTH=337;; (*ITAG) Solyc02g078930.1.1 (e_value=5e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38128755-38129867 transcript_region:SL2.40ch02:38128755..38129867- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 ***- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00031144g0006.1 protein AED:0.06 eAED:0.06 QI:47|0|0.33|1|0.5|0.33|3|0|854; (*GB) gi|359493687|ref|XP_003634651.1| (e_value=0.0) PREDICTED: receptor-like protein kinase THESEUS 1-like [Vitis vinifera];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=0.0) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=0.0) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc10g006870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1295869-1298391 transcript_region:SL2.40ch10:1295869..1298391- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00010087g0005.1 protein AED:0.00 eAED:0.00 QI:24|1|1|1|0.5|0.33|3|5|110; (*GB) gi|255561640|ref|XP_002521830.1| (e_value=4e-50) vacuolar ATP synthase subunit G plant, putative [Ricinus communis];; (*SWP) sp|Q9SP55|VATG_CITLI (e_value=2e-38) V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1;; (*TAIR) AT4G25950.1 (e_value=2e-35) | Symbols: VATG3 | vacuolar ATP synthase G3 | chr4:13173815-13174324 REVERSE LENGTH=108;; (*ITAG) Solyc02g078190.2.1 (e_value=5e-62) genomic_reference:SL2.40ch02 gene_region:37531770-37533050 transcript_region:SL2.40ch02:37531770..37533050- go_terms:GO:0046961 functional_description:"V-type proton ATPase subunit G (AHRD V1 **** VATG_CITLI); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0046961 NbS00010087g0101.1 protein AED:0.24 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|348 NbS00010087g0103.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|235 NbS00010087g0110.1 protein AED:0.49 eAED:0.68 QI:0|0|0|0.66|0|0.33|3|0|151 NbS00034701g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|132; (*GB) gi|147806031|emb|CAN66429.1| (e_value=3e-15) hypothetical protein VITISV_005744 [Vitis vinifera];; (*TAIR) AT3G03710.1 (e_value=1e-13) | Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922;; (*ITAG) Solyc08g066120.2.1 (e_value=3e-45) genomic_reference:SL2.40ch08 gene_region:51763034-51764840 transcript_region:SL2.40ch08:51763034..51764840+ go_terms:GO:0006396,GO:0005739 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- D1R4D6_9CHLA); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0006396,GO:0005739 NbS00016486g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|0.5|2|292|283; (*GB) gi|224126383|ref|XP_002329540.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47020.1 (e_value=1e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19082005-19089800 FORWARD LENGTH=1421;; (*ITAG) Solyc08g077430.2.1 (e_value=9e-118) genomic_reference:SL2.40ch08 gene_region:58470265-58491077 transcript_region:SL2.40ch08:58470265..58491077+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7MQL9_ARALY)"; NbS00003065g0015.1 protein AED:0.09 eAED:0.09 QI:60|0.96|0.93|1|0.73|0.74|31|88|1522; (*GB) gi|380710181|gb|AFD98849.1| (e_value=0.0) DNA polymerase alpha catalytic subunit [Solanum lycopersicum];; (*SWP) sp|O48653|DPOLA_ORYSJ (e_value=0.0) DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2;; (*TAIR) AT5G67100.1 (e_value=0.0) | Symbols: ICU2 | DNA-directed DNA polymerases | chr5:26776994-26785104 FORWARD LENGTH=1524;; (*ITAG) Solyc02g093300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48779267-48792010 transcript_region:SL2.40ch02:48779267..48792010- go_terms:GO:0003887 functional_description:"DNA polymerase (AHRD V1 **** B9SC90_RICCO); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003887 NbS00003065g0017.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.71|1|1|1|7|318|348; (*GB) gi|359480799|ref|XP_002277966.2| (e_value=1e-49) PREDICTED: uncharacterized protein LOC100245665 [Vitis vinifera];; (*SWP) sp|Q9FUA4|SPT_ARATH (e_value=1e-26) Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1;; (*TAIR) AT4G36930.1 (e_value=8e-28) | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17414167-17415945 FORWARD LENGTH=373;; (*ITAG) Solyc02g093280.2.1 (e_value=8e-147) genomic_reference:SL2.40ch02 gene_region:48767476-48769813 transcript_region:SL2.40ch02:48767476..48769813+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor EB (AHRD V1 *-*- TFEB_HUMAN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00003065g0016.1 protein AED:0.22 eAED:0.22 QI:349|0.93|0.87|1|0.8|0.68|16|0|518; (*GB) gi|224081698|ref|XP_002306477.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VQX4|PNCB_DROME (e_value=0.0) Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2;; (*TAIR) AT4G36940.1 (e_value=0.0) | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase 1 | chr4:17416938-17419883 FORWARD LENGTH=559;; (*ITAG) Solyc02g093290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48771224-48779373 transcript_region:SL2.40ch02:48771224..48779373+ go_terms:GO:0004516 functional_description:"Nicotinate phosphoribosyltransferase-like protein (AHRD V1 **** Q6XQM5_MEDTR); contains Interpro domain(s) IPR006405 Nicotinate phosphoribosyltransferase putative "; GO:0004516 NbS00003056g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=1e-27) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=3e-29) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=5e-26) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc11g008510.1.1 (e_value=8e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2684326-2686166 transcript_region:SL2.40ch11:2684326..2686166+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0005840 NbS00003056g0008.1 protein AED:0.19 eAED:0.19 QI:23|0.66|0.85|0.85|0.66|0.42|7|120|135; (*GB) gi|224135639|ref|XP_002327268.1| (e_value=9e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5VV42|CDKAL_HUMAN (e_value=9e-37) Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Homo sapiens GN=CDKAL1 PE=1 SV=1;; (*TAIR) AT1G72090.1 (e_value=2e-60) | Symbols: | Methylthiotransferase | chr1:27123617-27126767 FORWARD LENGTH=601;; (*ITAG) Solyc11g022390.1.1 (e_value=6e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:13722567-13735038 transcript_region:SL2.40ch11:13722567..13735038+ go_terms:GO:0008152,GO:0051536,GO:0009451 functional_description:"(Dimethylallyl)adenosine tRNA methylthiotransferase miaB (AHRD V1 ***- MIAB_SULSY); contains Interpro domain(s) IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type "; GO:0008152,GO:0051536,GO:0009451 NbS00003056g0010.1 protein AED:0.08 eAED:0.08 QI:424|1|0.85|1|0.16|0.28|7|0|200; (*GB) gi|359495729|ref|XP_002267937.2| (e_value=1e-39) PREDICTED: putative cyclin-D6-1-like, partial [Vitis vinifera];; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=4e-26) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1;; (*TAIR) AT4G03270.1 (e_value=3e-27) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc02g079370.2.1 (e_value=9e-82) genomic_reference:SL2.40ch02 gene_region:38540098-38541854 transcript_region:SL2.40ch02:38540098..38541854+ go_terms:GO:0004693 functional_description:"Cyclin-D6-1 (AHRD V1 **** CCD61_ORYSJ); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004693 NbS00003056g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|812; (*GB) gi|225449798|ref|XP_002272111.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera];; (*SWP) sp|Q3E6Q1|PPR32_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1;; (*TAIR) AT1G11290.1 (e_value=0.0) | Symbols: CRR22 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=809;; (*ITAG) Solyc02g079380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38544314-38546749 transcript_region:SL2.40ch02:38544314..38546749- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003056g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|255567451|ref|XP_002524705.1| (e_value=7e-138) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT4G05150.1 (e_value=3e-89) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr4:2660339-2662675 FORWARD LENGTH=477;; (*ITAG) Solyc02g079360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38533196-38534353 transcript_region:SL2.40ch02:38533196..38534353+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00048367g0005.1 protein AED:0.03 eAED:0.03 QI:78|1|1|1|1|1|4|78|164; (*GB) gi|351727411|ref|NP_001236136.1| (e_value=6e-92) uncharacterized protein LOC100306513 [Glycine max];; (*TAIR) AT3G53990.1 (e_value=2e-85) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:19989658-19991019 REVERSE LENGTH=160;; (*ITAG) Solyc09g011670.2.1 (e_value=4e-109) genomic_reference:SL2.40ch09 gene_region:4913443-4917118 transcript_region:SL2.40ch09:4913443..4917118- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7LUP3_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00011150g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|327; (*GB) gi|134303284|gb|ABO70985.1| (e_value=0.0) gibberellin 2-oxidase 3 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=6e-151) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G30040.1 (e_value=4e-121) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc07g061720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61904916-61906322 transcript_region:SL2.40ch07:61904916..61906322- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL8_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00045028g0001.1 protein AED:0.29 eAED:0.51 QI:1|0|0|1|0|0|4|0|93; (*ITAG) Solyc12g038200.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34575109-34580812 transcript_region:SL2.40ch12:34575109..34580812- go_terms:GO:0030117,GO:0005488 functional_description:"Coatomer subunit gamma (AHRD V1 *-*- B6SV32_MAIZE); contains Interpro domain(s) IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal "; GO:0030117,GO:0005488 NbS00011927g0011.1 protein AED:0.13 eAED:0.18 QI:50|0.72|0.58|0.91|1|0.83|12|0|468; (*GB) gi|224101187|ref|XP_002312177.1| (e_value=1e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7T7|SCC11_ARATH (e_value=4e-61) Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2;; (*TAIR) AT5G05490.2 (e_value=2e-62) | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein | chr5:1624712-1629144 FORWARD LENGTH=617;; (*ITAG) Solyc06g074870.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42782331-42784881 transcript_region:SL2.40ch06:42782331..42784881+ functional_description:"Sister chromatid cohesion 1 protein 1 (AHRD V1 ***- SCC11_ARATH)"; NbS00011927g0010.1 protein AED:0.08 eAED:0.24 QI:1|0.8|0.66|1|0.6|0.5|6|0|155; (*GB) gi|255559503|ref|XP_002520771.1| (e_value=3e-46) cohesin subunit rad21, putative [Ricinus communis];; (*SWP) sp|Q9S7T7|SCC11_ARATH (e_value=5e-38) Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2;; (*TAIR) AT5G05490.2 (e_value=3e-39) | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein | chr5:1624712-1629144 FORWARD LENGTH=617;; (*ITAG) Solyc06g074860.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42780195-42782035 transcript_region:SL2.40ch06:42780195..42782035+ functional_description:"Double-strand-break repair protein rad21 (AHRD V1 ***- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; NbS00025395g0005.1 protein AED:0.31 eAED:0.33 QI:290|0.5|0.66|1|0|0.66|3|221|42 NbS00025395g0001.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|1|1|4|0|288; (*GB) gi|255547255|ref|XP_002514685.1| (e_value=1e-21) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g069540.1.1 (e_value=1e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39691637-39692050 transcript_region:SL2.40ch06:39691637..39692050- functional_description:"Unknown Protein (AHRD V1)"; NbS00025559g0001.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|57012756|sp|Q40476.1|ERF1_TOBAC (e_value=1e-32) RecName: Full=Ethylene-responsive transcription factor 1; Short=NtERF1; AltName: Full=Ethylene-responsive element-binding factor 1; Short=EREBP-1;; (*SWP) sp|Q40476|ERF1_TOBAC (e_value=3e-34) Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1;; (*TAIR) AT2G44840.1 (e_value=2e-26) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc05g052050.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61543529-61544233 transcript_region:SL2.40ch05:61543529..61544233+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 **** D1MWZ3_CITLA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00017079g0006.1 protein AED:0.00 eAED:0.00 QI:231|1|1|1|1|1|2|271|87 NbS00017079g0008.1 protein AED:0.36 eAED:0.55 QI:68|0|0|1|0|0|2|0|45 NbS00006468g0005.1 protein AED:0.64 eAED:0.78 QI:0|0|0|0.33|0.2|0.16|6|0|182 NbS00006468g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|225458711|ref|XP_002283006.1| (e_value=7e-17) PREDICTED: protein DCL, chloroplastic [Vitis vinifera];; (*ITAG) Solyc04g078480.2.1 (e_value=2e-36) genomic_reference:SL2.40ch04 gene_region:60806121-60812694 transcript_region:SL2.40ch04:60806121..60812694- functional_description:"DNA-directed RNA polymerase (Fragment) (AHRD V1 *-*- D7UBN7_VITVI)"; NbS00030985g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.66|1|0.8|0.66|6|592|321; (*GB) gi|224109896|ref|XP_002315347.1| (e_value=7e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2N2K1|PHYK1_SOYBN (e_value=7e-93) Probable phytol kinase 1, chloroplastic OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G04490.1 (e_value=3e-86) | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1279867-1281587 FORWARD LENGTH=304;; (*ITAG) Solyc03g071720.2.1 (e_value=3e-134) genomic_reference:SL2.40ch03 gene_region:41444357-41447680 transcript_region:SL2.40ch03:41444357..41447680+ go_terms:GO:0010276,GO:0004605 functional_description:"Phosphatidate cytidylyltransferase family protein expressed (AHRD V1 **-* Q2QYV3_ORYSJ); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0010276,GO:0004605 NbS00034890g0001.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|225447661|ref|XP_002275421.1| (e_value=9e-33) PREDICTED: uncharacterized protein LOC100257932 [Vitis vinifera];; (*TAIR) AT4G10270.1 (e_value=2e-26) | Symbols: | Wound-responsive family protein | chr4:6374805-6375077 FORWARD LENGTH=90;; (*ITAG) Solyc07g054760.1.1 (e_value=1e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60303086-60303337 transcript_region:SL2.40ch07:60303086..60303337- functional_description:"Wound induced protein (AHRD V1 ***- B6T0U0_MAIZE)"; NbS00038152g0001.1 protein AED:0.40 eAED:0.40 QI:0|0.75|0.6|1|0.75|0.6|5|130|128; (*GB) gi|297744862|emb|CBI38313.3| (e_value=1e-66) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G48470.1 (e_value=4e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19641810-19644127 FORWARD LENGTH=397;; (*ITAG) Solyc09g056160.2.1 (e_value=5e-70) genomic_reference:SL2.40ch09 gene_region:42770759-42775847 transcript_region:SL2.40ch09:42770759..42775847+ functional_description:"Genomic DNA chromosome 5 P1 clone MJE7 (AHRD V1 ***- Q9LV67_ARATH)"; NbS00041934g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.5|1|1|0.75|4|0|265; (*GB) gi|225424376|ref|XP_002281269.1| (e_value=6e-66) PREDICTED: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase-like [Vitis vinifera];; (*SWP) sp|P0C2G7|LPXC_ARATH (e_value=4e-54) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Arabidopsis thaliana GN=At1g24793 PE=2 SV=1;; (*TAIR) AT1G24793.2 (e_value=2e-56) | Symbols: | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein | chr1:8767581-8768922 FORWARD LENGTH=266;; (*ITAG) Solyc07g008850.2.1 (e_value=4e-85) genomic_reference:SL2.40ch07 gene_region:3825382-3832232 transcript_region:SL2.40ch07:3825382..3832232- go_terms:GO:0009245 functional_description:"UDP-3-O- (AHRD V1 ***- B9SJ32_RICCO); contains Interpro domain(s) IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase "; GO:0009245 NbS00003281g0013.1 protein AED:0.26 eAED:0.45 QI:0|0|0|1|1|1|2|0|88; (*ITAG) Solyc01g006760.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:1348524-1349983 transcript_region:SL2.40ch01:1348524..1349983- functional_description:"Unknown Protein (AHRD V1)"; NbS00003281g0014.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.66|3|0|479; (*GB) gi|147838046|emb|CAN65210.1| (e_value=0.0) hypothetical protein VITISV_043548 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=9e-125) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc01g006770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1351345-1354626 transcript_region:SL2.40ch01:1351345..1354626+ go_terms:GO:0016757 functional_description:"Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (AHRD V1 *--- C1GLT_HUMAN); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00003281g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|4105784|gb|AAD02549.1| (e_value=2e-57) PGPS/D7 [Petunia x hybrida];; (*ITAG) Solyc10g081670.1.1 (e_value=1e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62020522-62025047 transcript_region:SL2.40ch10:62020522..62025047- go_terms:GO:0030599 functional_description:"PGPS/D7 (AHRD V1 ***- Q9ZNX3_PETHY); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00056984g0008.1 protein AED:0.14 eAED:0.15 QI:6|0.92|0.96|1|0.92|0.96|28|364|1269; (*GB) gi|356570066|ref|XP_003553212.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 3-like [Glycine max];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=0.0) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=0.0) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc05g006640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1293312-1308931 transcript_region:SL2.40ch05:1293312..1308931- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00056984g0002.1 protein AED:0.32 eAED:0.33 QI:0|0|0.2|1|1|1|5|0|448; (*GB) gi|297737987|emb|CBI27188.3| (e_value=1e-104) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54070.1 (e_value=3e-78) | Symbols: | Ankyrin repeat family protein | chr3:20021330-20023603 REVERSE LENGTH=574;; (*ITAG) Solyc02g068600.2.1 (e_value=2e-109) genomic_reference:SL2.40ch02 gene_region:33142873-33144717 transcript_region:SL2.40ch02:33142873..33144717- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 **-- Q9FMD0_ARATH)"; GO:0005515 NbS00051554g0004.1 protein AED:0.10 eAED:0.10 QI:435|0.90|0.91|1|0.54|0.5|12|842|691; (*GB) gi|225464265|ref|XP_002271012.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein HDG11-like [Vitis vinifera];; (*SWP) sp|Q9FX31|HDG11_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1;; (*TAIR) AT1G73360.1 (e_value=0.0) | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722;; (*ITAG) Solyc06g072310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40978399-40981854 transcript_region:SL2.40ch06:40978399..40981854- go_terms:GO:0003700 functional_description:"Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (AHRD V1 **** PDF2_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700 NbS00000919g0007.1 protein AED:0.15 eAED:0.15 QI:214|0.57|0.62|1|0.42|0.25|8|216|869; (*GB) gi|224060508|ref|XP_002300226.1| (e_value=1e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SLN1|FPP7_ARATH (e_value=8e-68) Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=2 SV=2;; (*TAIR) AT2G23360.1 (e_value=6e-69) | Symbols: | Plant protein of unknown function (DUF869) | chr2:9949420-9952727 FORWARD LENGTH=898;; (*ITAG) Solyc01g107890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87042145-87046020 transcript_region:SL2.40ch01:87042145..87046020+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00000919g0006.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|1|1|3|0|89; (*GB) gi|296088146|emb|CBI35591.3| (e_value=1e-21) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g059060.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:48696880-48697071 transcript_region:SL2.40ch09:48696880..48697071- functional_description:"Chloroplastic quinone-oxidoreductase (AHRD V1 ***- B6SZC2_MAIZE)"; NbS00017139g0002.1 protein AED:0.32 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|357454865|ref|XP_003597713.1| (e_value=6e-80) hypothetical protein MTR_2g101480 [Medicago truncatula];; (*TAIR) AT3G16200.1 (e_value=6e-76) | Symbols: | unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:5491619-5493605 REVERSE LENGTH=456;; (*ITAG) Solyc03g120490.2.1 (e_value=5e-86) genomic_reference:SL2.40ch03 gene_region:62926123-62930230 transcript_region:SL2.40ch03:62926123..62930230+ functional_description:"Genomic DNA chromosome 3 P1 clone MYA6 (AHRD V1 ***- Q9LU25_ARATH)"; NbS00023446g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|10|0|531; (*GB) gi|1743354|emb|CAA71003.1| (e_value=0.0) aldehyde dehydrogenase (NAD+) [Nicotiana tabacum];; (*SWP) sp|Q8S528|AL2B7_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2;; (*TAIR) AT1G23800.1 (e_value=0.0) | Symbols: ALDH2B7, ALDH2B | aldehyde dehydrogenase 2B7 | chr1:8412238-8414804 REVERSE LENGTH=534;; (*ITAG) Solyc05g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:514498-518886 transcript_region:SL2.40ch05:514498..518886- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 **** Q84V96_LOTCO); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00023446g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|116778782|gb|ABK20993.1| (e_value=3e-95) unknown [Picea sitchensis];; (*SWP) sp|P46293|RS16_GOSHI (e_value=1e-93) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=8e-93) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc05g005690.1.1 (e_value=4e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:510033-510476 transcript_region:SL2.40ch05:510033..510476- go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00023446g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|71 NbS00054772g0009.1 protein AED:0.01 eAED:0.01 QI:374|0.5|0.33|1|1|1|3|128|834; (*GB) gi|255544043|ref|XP_002513084.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SFX2|PUB43_ARATH (e_value=1e-20) U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1;; (*TAIR) AT1G76390.2 (e_value=7e-22) | Symbols: | ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811;; (*ITAG) Solyc01g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70128040-70130798 transcript_region:SL2.40ch01:70128040..70130798+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00054772g0008.1 protein AED:0.09 eAED:0.09 QI:146|0.76|0.71|1|0.92|0.92|14|0|1427; (*GB) gi|225449865|ref|XP_002265477.1| (e_value=0.0) PREDICTED: intron-binding protein aquarius-like [Vitis vinifera];; (*SWP) sp|O60306|AQR_HUMAN (e_value=0.0) Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4;; (*TAIR) AT2G38770.1 (e_value=0.0) | Symbols: EMB2765 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16203185-16210253 REVERSE LENGTH=1509;; (*ITAG) Solyc01g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70111269-70125144 transcript_region:SL2.40ch01:70111269..70125144+ functional_description:"Embryo defective 2765 (Fragment) (AHRD V1 *-*- D3U0D1_9MAGN)"; NbS00054772g0004.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|224128252|ref|XP_002329118.1| (e_value=8e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR14|Y4317_ARATH (e_value=6e-22) Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1;; (*TAIR) AT4G03170.1 (e_value=5e-23) | Symbols: | AP2/B3-like transcriptional factor family protein | chr4:1400832-1401584 FORWARD LENGTH=250;; (*ITAG) Solyc12g007300.1.1 (e_value=5e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1699431-1700138 transcript_region:SL2.40ch12:1699431..1700138+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g20600 (AHRD V1 *-*- Y1060_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00027403g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|81 NbS00009170g0012.1 protein AED:0.00 eAED:0.00 QI:43|1|0.66|1|0|0|3|154|306; (*GB) gi|225429476|ref|XP_002277676.1| (e_value=4e-58) PREDICTED: transcription factor MYB1R1 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=4e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G47390.1 (e_value=8e-48) | Symbols: | myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365;; (*ITAG) Solyc08g065380.2.1 (e_value=6e-94) genomic_reference:SL2.40ch08 gene_region:50511820-50515346 transcript_region:SL2.40ch08:50511820..50515346- go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 **** B1Q4U5_9ROSI); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00009170g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|0.5|0.66|3|367|77; (*GB) gi|255550812|ref|XP_002516454.1| (e_value=8e-20) potassium:hydrogen antiporter, putative [Ricinus communis];; (*SWP) sp|Q9ZUN3|KEA4_ARATH (e_value=3e-17) K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2;; (*TAIR) AT2G19600.1 (e_value=2e-18) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc08g065360.2.1 (e_value=2e-32) genomic_reference:SL2.40ch08 gene_region:50488254-50508388 transcript_region:SL2.40ch08:50488254..50508388+ go_terms:GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q8TJ09_METAC); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00009170g0010.1 protein AED:0.14 eAED:0.14 QI:190|0.83|0.61|1|0.83|0.84|13|0|416; (*GB) gi|224142882|ref|XP_002324763.1| (e_value=8e-147) potassium efflux antiporter [Populus trichocarpa];; (*SWP) sp|B5X0N6|KEA6_ARATH (e_value=3e-138) K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1;; (*TAIR) AT5G11800.1 (e_value=3e-139) | Symbols: KEA6, ATKEA6 | K+ efflux antiporter 6 | chr5:3803635-3808069 REVERSE LENGTH=597;; (*ITAG) Solyc08g065360.2.1 (e_value=2e-172) genomic_reference:SL2.40ch08 gene_region:50488254-50508388 transcript_region:SL2.40ch08:50488254..50508388+ go_terms:GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q8TJ09_METAC); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00009170g0009.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|0|0.25|4|0|83; (*SWP) sp|Q9ZUN3|KEA4_ARATH (e_value=2e-13) K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2;; (*TAIR) AT2G19600.1 (e_value=1e-14) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc08g065360.2.1 (e_value=9e-15) genomic_reference:SL2.40ch08 gene_region:50488254-50508388 transcript_region:SL2.40ch08:50488254..50508388+ go_terms:GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q8TJ09_METAC); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00009170g0016.1 protein AED:0.25 eAED:0.25 QI:0|0.92|1|1|0.84|0.85|14|438|479; (*GB) gi|225429480|ref|XP_002277742.1| (e_value=0.0) PREDICTED: histone deacetylase 2 [Vitis vinifera];; (*SWP) sp|Q944K3|HDA2_ARATH (e_value=0.0) Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2;; (*TAIR) AT5G26040.2 (e_value=0.0) | Symbols: HDA2 | histone deacetylase 2 | chr5:9099321-9101598 REVERSE LENGTH=387;; (*ITAG) Solyc08g065350.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50469218-50477686 transcript_region:SL2.40ch08:50469218..50477686+ go_terms:GO:0008134,GO:0004407 functional_description:"Histone deacetylase 11 (AHRD V1 **** B6T7F6_MAIZE); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0008134,GO:0004407 NbS00010064g0004.1 protein AED:0.15 eAED:0.15 QI:182|1|1|1|0.69|0.71|14|341|520; (*GB) gi|225447129|ref|XP_002274603.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 1 [Vitis vinifera];; (*SWP) sp|Q9SHZ3|NAT1_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1;; (*TAIR) AT2G05760.1 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr2:2180978-2183710 FORWARD LENGTH=520;; (*ITAG) Solyc07g049320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56900908-56905495 transcript_region:SL2.40ch07:56900908..56905495+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9IAJ7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00038533g0013.1 protein AED:0.11 eAED:0.11 QI:112|1|1|1|1|1|7|556|250; (*GB) gi|217071566|gb|ACJ84143.1| (e_value=1e-98) unknown [Medicago truncatula];; (*TAIR) AT1G02475.1 (e_value=2e-86) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:514110-515331 REVERSE LENGTH=219;; (*ITAG) Solyc01g068020.2.1 (e_value=3e-118) genomic_reference:SL2.40ch01 gene_region:69454142-69456938 transcript_region:SL2.40ch01:69454142..69456938- functional_description:"Cyclase/dehydrase (AHRD V1 ***- B6T2Z5_MAIZE); contains Interpro domain(s) IPR005031 Streptomyces cyclase/dehydrase "; NbS00038533g0021.1 protein AED:0.15 eAED:0.15 QI:249|0.5|1|1|0.75|0.8|5|14|440; (*GB) gi|224128211|ref|XP_002320271.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=3e-161) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G02460.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:504897-507099 REVERSE LENGTH=491;; (*ITAG) Solyc01g079130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70719258-70721952 transcript_region:SL2.40ch01:70719258..70721952+ go_terms:GO:0005975,GO:0006364 functional_description:"Polygalacturonase (AHRD V1 ***- B6TPQ7_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975,GO:0006364 NbS00038533g0015.1 protein AED:0.24 eAED:0.24 QI:116|1|0.5|1|0.66|1|4|0|348; (*GB) gi|356534653|ref|XP_003535867.1| (e_value=2e-174) PREDICTED: probable protein phosphatase 2C 49-like [Glycine max];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=6e-143) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.2 (e_value=5e-144) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=384;; (*ITAG) Solyc01g068000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69442214-69447222 transcript_region:SL2.40ch01:69442214..69447222+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00038533g0019.1 protein AED:0.36 eAED:0.46 QI:8|0|0|1|0|0|2|0|134; (*ITAG) Solyc08g016290.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00038533g0018.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|3|0|121 NbS00014863g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|2980781|emb|CAA18208.1| (e_value=2e-40) putative protein [Arabidopsis thaliana];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=2e-15) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT4G30850.2 (e_value=3e-42) | Symbols: HHP2 | heptahelical transmembrane protein2 | chr4:15020540-15022278 REVERSE LENGTH=358;; (*ITAG) Solyc07g006020.2.1 (e_value=7e-56) genomic_reference:SL2.40ch07 gene_region:862865-866795 transcript_region:SL2.40ch07:862865..866795+ go_terms:GO:0004872,GO:0046872 functional_description:"Adiponectin receptor (AHRD V1 **** Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872,GO:0046872 NbS00014863g0008.1 protein AED:0.16 eAED:0.17 QI:490|0.64|0.44|1|0.82|0.83|18|0|1635; (*GB) gi|359484809|ref|XP_003633167.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257033 [Vitis vinifera];; (*SWP) sp|A1ZAB5|K0664_DROME (e_value=3e-13) Protein KIAA0664 homolog OS=Drosophila melanogaster GN=CG8443 PE=1 SV=1;; (*TAIR) AT4G28080.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13948993-13957840 REVERSE LENGTH=1819;; (*ITAG) Solyc07g006030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:866918-880889 transcript_region:SL2.40ch07:866918..880889- go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00015104g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|255585473|ref|XP_002533429.1| (e_value=3e-73) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=2e-32) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT2G23945.1 (e_value=4e-70) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:10185229-10186605 REVERSE LENGTH=458;; (*ITAG) Solyc07g054650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60236558-60237904 transcript_region:SL2.40ch07:60236558..60237904+ go_terms:GO:0005515,GO:0003677 functional_description:"Aspartyl protease family protein (AHRD V1 **-- Q9SZV6_ARATH); contains Interpro domain(s) IPR009007 Peptidase aspartic, catalytic "; GO:0005515,GO:0003677 NbS00041032g0003.1 protein AED:0.02 eAED:0.02 QI:60|1|1|1|1|1|7|446|498; (*GB) gi|359488210|ref|XP_003633720.1| (e_value=0.0) PREDICTED: histone deacetylase 19-like [Vitis vinifera];; (*SWP) sp|O22446|HDA19_ARATH (e_value=0.0) Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2;; (*TAIR) AT4G38130.1 (e_value=0.0) | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 | histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501;; (*ITAG) Solyc09g091440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66071268-66077194 transcript_region:SL2.40ch09:66071268..66077194- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9MZ37_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00012587g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.25|1|1|4|0|96 NbS00012587g0006.1 protein AED:0.12 eAED:0.12 QI:377|1|1|1|1|1|6|414|536; (*GB) gi|225439894|ref|XP_002275070.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248201 [Vitis vinifera];; (*TAIR) AT3G09690.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:2972356-2974592 FORWARD LENGTH=527;; (*ITAG) Solyc09g007380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:972929-976824 transcript_region:SL2.40ch09:972929..976824+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7M7Y1_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00011648g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.92|0.85|0.92|0.76|0.92|14|240|570; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=0.0) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=0.0) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=0.0) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc06g074740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42668546-42679343 transcript_region:SL2.40ch06:42668546..42679343- go_terms:GO:0008017 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR017986 WD40 repeat, region "; GO:0008017 NbS00011648g0017.1 protein AED:0.46 eAED:0.46 QI:0|0.4|0.16|0.66|0.8|0.83|6|0|275; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=0.0) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=0.0) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=1e-154) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc06g074740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42668546-42679343 transcript_region:SL2.40ch06:42668546..42679343- go_terms:GO:0008017 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR017986 WD40 repeat, region "; GO:0008017 NbS00011648g0011.1 protein AED:0.15 eAED:0.12 QI:79|0.95|0.85|1|0.85|0.85|21|1596|537; (*GB) gi|297734872|emb|CBI17106.3| (e_value=1e-150) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SJK3|AGO5_ARATH (e_value=1e-129) Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2;; (*TAIR) AT2G27880.1 (e_value=8e-131) | Symbols: AGO5 | Argonaute family protein | chr2:11871488-11876712 FORWARD LENGTH=997;; (*ITAG) Solyc06g074730.2.1 (e_value=9e-180) genomic_reference:SL2.40ch06 gene_region:42661355-42667953 transcript_region:SL2.40ch06:42661355..42667953+ go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00011648g0016.1 protein AED:0.21 eAED:0.21 QI:145|0.85|0.87|1|0.57|0.75|8|376|213; (*GB) gi|82623439|gb|ABB87134.1| (e_value=3e-97) RNA binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q6GL69|MK67I_XENTR (e_value=2e-31) MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1;; (*TAIR) AT5G04600.1 (e_value=4e-65) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222;; (*ITAG) Solyc06g074720.2.1 (e_value=8e-90) genomic_reference:SL2.40ch06 gene_region:42639045-42643117 transcript_region:SL2.40ch06:42639045..42643117+ go_terms:GO:0005515,GO:0003723 functional_description:"MKI67 FHA domain-interacting nucleolar phosphoprotein-like (AHRD V1 **-- B6THB2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00037082g0001.1 protein AED:0.09 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|912|293; (*GB) gi|359483740|ref|XP_002273017.2| (e_value=7e-96) PREDICTED: uncharacterized protein LOC100260025 [Vitis vinifera];; (*TAIR) AT3G58630.1 (e_value=5e-37) | Symbols: | sequence-specific DNA binding transcription factors | chr3:21683928-21685771 REVERSE LENGTH=321;; (*ITAG) Solyc02g076810.2.1 (e_value=2e-111) genomic_reference:SL2.40ch02 gene_region:36499354-36503034 transcript_region:SL2.40ch02:36499354..36503034+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LW59_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbC25780041g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.83|1|1|1|6|0|352; (*GB) gi|55274624|gb|AAV49159.1| (e_value=0.0) plasma membrane proton ATPase 5 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9M2A0|PMA8_ARATH (e_value=0.0) ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1;; (*TAIR) AT3G42640.1 (e_value=0.0) | Symbols: AHA8, HA8 | H(+)-ATPase 8 | chr3:14724309-14728062 FORWARD LENGTH=948;; (*ITAG) Solyc12g010360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3413621-3421147 transcript_region:SL2.40ch12:3413621..3421147+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00018531g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|19913105|emb|CAC84545.1| (e_value=6e-96) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|P0C582|M2OM_NEUCR (e_value=1e-37) Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU04792 PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=4e-85) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=1e-96) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00048279g0011.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0.2|1|0.75|0.6|5|0|256; (*GB) gi|225429299|ref|XP_002269988.1| (e_value=3e-66) PREDICTED: transcription factor bHLH113-like [Vitis vinifera];; (*SWP) sp|Q9LT67|BH113_ARATH (e_value=4e-43) Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1;; (*TAIR) AT3G19500.1 (e_value=3e-44) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6759289-6760893 REVERSE LENGTH=270;; (*ITAG) Solyc01g107490.1.1 (e_value=2e-104) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:86785050-86786211 transcript_region:SL2.40ch01:86785050..86786211+ go_terms:GO:0005634 functional_description:"BHLH transcription factor (AHRD V1 *-*- Q7XJU1_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634 NbS00048279g0010.1 protein AED:0.24 eAED:0.27 QI:60|0.71|0.68|0.95|0.90|0.81|22|0|964; (*GB) gi|296083109|emb|CBI22513.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A3EWL3|REV1_ARATH (e_value=0.0) DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1;; (*TAIR) AT5G44750.1 (e_value=0.0) | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases | chr5:18052669-18059581 FORWARD LENGTH=1101;; (*ITAG) Solyc01g107510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86789256-86804953 transcript_region:SL2.40ch01:86789256..86804953+ go_terms:GO:0017125,GO:0003887 functional_description:"DNA polymerase IV (AHRD V1 **** C1GRH3_PARBA); contains Interpro domain(s) IPR012112 DNA repair protein, Rev1 "; GO:0017125,GO:0003887 NbS00048279g0012.1 protein AED:0.45 eAED:0.45 QI:146|0.33|0.25|0.75|1|1|4|0|96; (*GB) gi|359475466|ref|XP_002268939.2| (e_value=3e-41) PREDICTED: UPF0631 protein At3g19508-like [Vitis vinifera];; (*SWP) sp|Q1G3M2|U631_ARATH (e_value=2e-32) UPF0631 protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1;; (*TAIR) AT3G19508.1 (e_value=1e-33) | Symbols: | unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6762378-6762696 REVERSE LENGTH=81;; (*ITAG) Solyc01g107470.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:86773452-86774272 transcript_region:SL2.40ch01:86773452..86774272+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013619g0006.1 protein AED:0.10 eAED:0.10 QI:80|0.75|0.6|1|0.25|0.2|5|217|366; (*GB) gi|147795077|emb|CAN60857.1| (e_value=2e-25) hypothetical protein VITISV_026075 [Vitis vinifera];; (*ITAG) Solyc10g047040.1.1 (e_value=2e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:34709751-34711043 transcript_region:SL2.40ch10:34709751..34711043+ go_terms:GO:0008270 functional_description:"Zinc finger protein zfs1 (AHRD V1 *-*- ZFS1_SCHPO); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00039909g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|630; (*GB) gi|8894548|emb|CAB95829.1| (e_value=7e-164) hypothetical protein [Cicer arietinum];; (*SWP) sp|Q56Z59|PATL3_ARATH (e_value=2e-136) Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2;; (*TAIR) AT1G72160.1 (e_value=2e-137) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:27153823-27155609 REVERSE LENGTH=490;; (*ITAG) Solyc11g051160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:42742933-42744970 transcript_region:SL2.40ch11:42742933..42744970+ functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C5JFB2_AJEDS); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00039909g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|133; (*ITAG) Solyc01g049640.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:40678900-40679439 transcript_region:SL2.40ch01:40678900..40679439+ functional_description:"Polynucleotidyl transferase Ribonuclease H fold (AHRD V1 ***- A2Q617_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00049041g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|86 NbS00016955g0001.1 protein AED:0.33 eAED:0.33 QI:691|1|1|1|0.33|0.25|4|356|110; (*GB) gi|356510657|ref|XP_003524053.1| (e_value=2e-25) PREDICTED: protein phosphatase 2C 29-like [Glycine max];; (*SWP) sp|O82302|P2C29_ARATH (e_value=6e-22) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=4e-23) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g007000.2.1 (e_value=2e-40) genomic_reference:SL2.40ch08 gene_region:1576129-1582322 transcript_region:SL2.40ch08:1576129..1582322+ go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00016955g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|214 NbS00015567g0016.1 protein AED:0.30 eAED:0.30 QI:115|1|0.94|1|0.94|0.94|18|352|482; (*GB) gi|225442341|ref|XP_002281000.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 6 [Vitis vinifera];; (*SWP) sp|Q949Y0|UBP6_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1;; (*TAIR) AT1G51710.1 (e_value=0.0) | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease 6 | chr1:19175805-19179894 REVERSE LENGTH=482;; (*ITAG) Solyc12g044740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45436676-45448004 transcript_region:SL2.40ch12:45436676..45448004+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N1B6_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00015567g0013.1 protein AED:0.06 eAED:0.13 QI:0|0.5|0.2|1|0.25|0.6|5|0|352; (*GB) gi|356561259|ref|XP_003548900.1| (e_value=1e-143) PREDICTED: probable pectate lyase 16-like [Glycine max];; (*SWP) sp|Q9LRM5|PLY9_ARATH (e_value=3e-75) Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1;; (*TAIR) AT5G09280.1 (e_value=2e-94) | Symbols: | Pectin lyase-like superfamily protein | chr5:2880423-2881597 REVERSE LENGTH=297;; (*ITAG) Solyc12g044750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45449215-45451171 transcript_region:SL2.40ch12:45449215..45451171- functional_description:"Pectate lyase family protein (AHRD V1 ***- D7M222_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; NbS00015567g0011.1 protein AED:0.15 eAED:0.15 QI:117|0.76|0.92|0.92|0.92|0.92|14|717|492; (*GB) gi|225442335|ref|XP_002280910.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=0.0) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc12g044800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45580005-45590307 transcript_region:SL2.40ch12:45580005..45590307- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00027316g0009.1 protein AED:0.13 eAED:0.13 QI:482|1|1|1|1|0.9|10|186|820; (*GB) gi|224103687|ref|XP_002313154.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7W8|FUCO2_ARATH (e_value=0.0) Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1;; (*TAIR) AT4G34260.1 (e_value=0.0) | Symbols: FUC95A | 1,2-alpha-L-fucosidases | chr4:16398130-16401591 FORWARD LENGTH=843; NbS00037467g0005.1 protein AED:0.04 eAED:0.04 QI:234|1|0.66|1|1|1|3|0|518; (*GB) gi|225437752|ref|XP_002281027.1| (e_value=6e-91) PREDICTED: uncharacterized protein LOC100247039 [Vitis vinifera];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=1e-80) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G09540.1 (e_value=7e-88) | Symbols: MYB61, ATMYB61 | myb domain protein 61 | chr1:3086333-3087689 FORWARD LENGTH=366;; (*ITAG) Solyc10g044680.1.1 (e_value=1e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22879521-22880870 transcript_region:SL2.40ch10:22879521..22880870+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-like transcription factor (AHRD V1 **-- B8XPP3_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00002939g0017.1 protein AED:0.17 eAED:0.22 QI:0|0.64|0.53|1|0.5|0.53|15|0|1617; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*SWP) sp|Q6WKZ8|UBR2_MOUSE (e_value=2e-26) E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2;; (*TAIR) AT5G02310.1 (e_value=0.0) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc10g084760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63495399-63513748 transcript_region:SL2.40ch10:63495399..63513748- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00002939g0018.1 protein AED:0.38 eAED:0.41 QI:379|1|0.33|1|0.5|1|3|0|484; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*SWP) sp|Q8IWV7|UBR1_HUMAN (e_value=3e-13) E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1;; (*TAIR) AT5G02310.1 (e_value=3e-147) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc10g084760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63495399-63513748 transcript_region:SL2.40ch10:63495399..63513748- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00002939g0004.1 protein AED:0.23 eAED:0.53 QI:0|0|0.5|1|0|0.5|2|215|99; (*ITAG) Solyc10g084760.1.1 (e_value=7e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63495399-63513748 transcript_region:SL2.40ch10:63495399..63513748- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00002939g0016.1 protein AED:0.32 eAED:0.32 QI:88|0.42|0.25|1|0.85|0.87|8|0|463; (*GB) gi|224138770|ref|XP_002322897.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g084750.1.1 (e_value=9e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63488111-63491575 transcript_region:SL2.40ch10:63488111..63491575+ go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1)"; GO:0005975 NbS00002939g0009.1 protein AED:0.54 eAED:0.79 QI:0|0|0|0.8|1|1|5|0|119 NbS00030305g0009.1 protein AED:0.16 eAED:0.37 QI:0|0|0|1|0|0|2|0|122 NbS00015089g0003.1 protein AED:0.26 eAED:0.26 QI:132|1|0.83|1|0.8|0.66|6|0|309; (*GB) gi|209167729|gb|ACI41889.1| (e_value=4e-170) chorismate mutase 1 [Petunia x hybrida];; (*SWP) sp|P42738|CHMU_ARATH (e_value=4e-123) Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=3;; (*TAIR) AT3G29200.1 (e_value=3e-124) | Symbols: CM1, ATCM1 | chorismate mutase 1 | chr3:11164582-11166258 REVERSE LENGTH=340;; (*ITAG) Solyc02g088460.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:45123129-45127345 transcript_region:SL2.40ch02:45123129..45127345- go_terms:GO:0004106,GO:0042803 functional_description:"Chorismate mutase 1 (AHRD V1 **** D2CSU4_PETHY); contains Interpro domain(s) IPR008238 Chorismate mutase of the AroQ class, eukaryotic type "; GO:0004106,GO:0042803 NbS00023699g0003.1 protein AED:0.23 eAED:0.25 QI:0|1|0.71|1|1|1|7|0|834; (*GB) gi|225449130|ref|XP_002277407.1| (e_value=0.0) PREDICTED: mitochondrial substrate carrier family protein C [Vitis vinifera];; (*SWP) sp|Q4V9P0|SAMC_DANRE (e_value=1e-30) S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1;; (*TAIR) AT2G35800.1 (e_value=0.0) | Symbols: | mitochondrial substrate carrier family protein | chr2:15044437-15048352 FORWARD LENGTH=823;; (*ITAG) Solyc04g050040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44390674-44411622 transcript_region:SL2.40ch04:44390674..44411622- go_terms:GO:0016020,GO:0005509 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 *-*- B6U3K8_MAIZE); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020,GO:0005509 NbS00016395g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0|2|1698|506; (*GB) gi|84873488|gb|ABC67804.1| (e_value=0.0) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=0.0) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00016395g0016.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|3|326|462; (*GB) gi|225443776|ref|XP_002271643.1| (e_value=0.0) PREDICTED: CBL-interacting protein kinase 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LWM4|CIPK5_ORYSJ (e_value=0.0) CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G45820.1 (e_value=0.0) | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting protein kinase 20 | chr5:18587081-18588400 REVERSE LENGTH=439;; (*ITAG) Solyc02g072540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36307673-36309670 transcript_region:SL2.40ch02:36307673..36309670- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** C4P7W5_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00016395g0017.1 protein AED:0.14 eAED:0.15 QI:9|0.5|0.33|1|0.5|0.33|3|376|559; (*GB) gi|225443788|ref|XP_002266263.1| (e_value=1e-85) PREDICTED: uncharacterized protein LOC100253264 [Vitis vinifera];; (*TAIR) AT1G29240.1 (e_value=2e-23) | Symbols: | Protein of unknown function (DUF688) | chr1:10217023-10218924 REVERSE LENGTH=577;; (*ITAG) Solyc02g076680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36402192-36404946 transcript_region:SL2.40ch02:36402192..36404946- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00016395g0015.1 protein AED:0.17 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|682; (*GB) gi|359483763|ref|XP_002265984.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Vitis vinifera];; (*SWP) sp|C0LGK9|Y2242_ARATH (e_value=2e-100) Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1;; (*TAIR) AT5G45800.1 (e_value=0.0) | Symbols: MEE62 | Leucine-rich repeat protein kinase family protein | chr5:18575765-18578972 REVERSE LENGTH=666;; (*ITAG) Solyc02g072520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36281095-36284514 transcript_region:SL2.40ch02:36281095..36284514- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00043217g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|357464071|ref|XP_003602317.1| (e_value=2e-42) 6-phosphogluconolactonase [Medicago truncatula];; (*SWP) sp|Q84WW2|6PGL5_ARATH (e_value=5e-33) Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1;; (*TAIR) AT5G24400.1 (e_value=4e-34) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc07g066270.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:64973786-64976784 transcript_region:SL2.40ch07:64973786..64976784- go_terms:GO:0017057 functional_description:"Glucosamine-6-phosphate deaminase (AHRD V1 ***- NAGB_ACHLI); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00009675g0010.1 protein AED:0.28 eAED:0.28 QI:285|0.5|0.6|1|0.25|0.2|5|0|133; (*GB) gi|357519693|ref|XP_003630135.1| (e_value=1e-21) hypothetical protein MTR_8g092180 [Medicago truncatula];; (*TAIR) AT3G52860.1 (e_value=1e-20) | Symbols: | unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:19591998-19592741 REVERSE LENGTH=156;; (*ITAG) Solyc08g074670.2.1 (e_value=8e-31) genomic_reference:SL2.40ch08 gene_region:55991207-55993576 transcript_region:SL2.40ch08:55991207..55993576+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009675g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|600; (*GB) gi|2916727|emb|CAA73103.1| (e_value=0.0) polyphenol oxidase [Nicotiana tabacum];; (*SWP) sp|Q08307|PPOE_SOLLC (e_value=0.0) Polyphenol oxidase E, chloroplastic OS=Solanum lycopersicum PE=3 SV=1;; (*ITAG) Solyc08g074620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:55911248-55913011 transcript_region:SL2.40ch08:55911248..55913011+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00000737g0003.1 protein AED:0.08 eAED:0.29 QI:0|0.8|0.83|1|0.4|0.33|6|11|160; (*GB) gi|356542266|ref|XP_003539590.1| (e_value=5e-53) PREDICTED: beta-glucosidase 18-like [Glycine max];; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=5e-53) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61820.1 (e_value=3e-47) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22835452-22838444 FORWARD LENGTH=516;; (*ITAG) Solyc07g063370.2.1 (e_value=6e-67) genomic_reference:SL2.40ch07 gene_region:63074862-63078665 transcript_region:SL2.40ch07:63074862..63078665- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00008482g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0.33|0.25|4|0|431; (*GB) gi|86279654|gb|ABC94482.1| (e_value=3e-162) putative taxane 13-alpha-hydroxylase cytochrome P450 [Artemisia annua];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=2e-118) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=2e-110) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g042880.1.1 (e_value=3e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53723939-53726909 transcript_region:SL2.40ch07:53723939..53726909+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00020205g0008.1 protein AED:0.21 eAED:0.21 QI:110|1|0.75|1|1|1|4|2652|294; (*GB) gi|255546605|ref|XP_002514362.1| (e_value=5e-45) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8VYU4|CCR4F_ARATH (e_value=4e-38) Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2;; (*TAIR) AT5G11350.1 (e_value=3e-39) | Symbols: | DNAse I-like superfamily protein | chr5:3621583-3625412 FORWARD LENGTH=754;; (*ITAG) Solyc08g067420.2.1 (e_value=2e-110) genomic_reference:SL2.40ch08 gene_region:53670390-53685952 transcript_region:SL2.40ch08:53670390..53685952- go_terms:GO:0003824 functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector (AHRD V1 *--- D6RLR7_COPC7); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0003824 NbS00020205g0005.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.33|1|1|3|0|87 NbS00058710g0003.1 protein AED:0.11 eAED:0.11 QI:1009|1|1|1|1|1|3|445|321; (*GB) gi|224117116|ref|XP_002317480.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L493|BCAL3_ARATH (e_value=3e-129) Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1;; (*TAIR) AT5G57850.1 (e_value=2e-130) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:23435548-23437287 REVERSE LENGTH=373;; (*ITAG) Solyc07g062810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62692633-62696200 transcript_region:SL2.40ch07:62692633..62696200- go_terms:GO:0008696 functional_description:"Branched-chain amino acid aminotransferase-like (AHRD V1 **** Q5NAM3_ORYSJ); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008696 NbS00016312g0013.1 protein AED:0.13 eAED:0.13 QI:182|0.71|0.75|1|0.57|0.62|8|270|197; (*GB) gi|13384060|gb|AAK21254.1|AF335241_1 (e_value=2e-119) MADS-box transcription factor FBP23 [Petunia x hybrida];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=5e-85) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT2G03710.2 (e_value=3e-78) | Symbols: SEP4, AGL3 | K-box region and MADS-box transcription factor family protein | chr2:1129622-1131628 FORWARD LENGTH=257;; (*ITAG) Solyc03g114840.2.1 (e_value=2e-117) genomic_reference:SL2.40ch03 gene_region:58767673-58773979 transcript_region:SL2.40ch03:58767673..58773979- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor 11 (AHRD V1 **** D9IFM5_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00016312g0017.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.62|0.87|1|1|8|0|203; (*GB) gi|5070142|gb|AAD39036.1|AF068725_1 (e_value=7e-120) MADS-box protein MADS1 [Nicotiana sylvestris];; (*SWP) sp|Q42429|AGL8_SOLTU (e_value=1e-97) Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G60910.1 (e_value=2e-57) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242;; (*ITAG) Solyc03g114830.2.1 (e_value=3e-115) genomic_reference:SL2.40ch03 gene_region:58752013-58758339 transcript_region:SL2.40ch03:58752013..58758339- go_terms:GO:0005515 functional_description:"MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00016312g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|63; (*GB) gi|258649765|gb|ACV86664.1| (e_value=2e-21) vernalization protein [Triticum aestivum];; (*SWP) sp|Q40170|AGL8_SOLLC (e_value=8e-22) Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1;; (*TAIR) AT5G60910.1 (e_value=2e-22) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242;; (*ITAG) Solyc06g069430.2.1 (e_value=6e-23) genomic_reference:SL2.40ch06 gene_region:39564649-39572843 transcript_region:SL2.40ch06:39564649..39572843- go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00022361g0005.1 protein AED:0.41 eAED:0.43 QI:0|0.5|0|0.8|0.5|0.4|5|0|249; (*GB) gi|76160976|gb|ABA40451.1| (e_value=4e-78) unknown [Solanum tuberosum];; (*TAIR) AT4G26210.2 (e_value=5e-71) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:13282370-13283118 FORWARD LENGTH=122;; (*ITAG) Solyc07g026770.2.1 (e_value=2e-82) genomic_reference:SL2.40ch07 gene_region:31132623-31137555 transcript_region:SL2.40ch07:31132623..31137555- go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- D7MFB8_ARALY); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00024385g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.25|0.75|1|1|4|0|439; (*GB) gi|255561745|ref|XP_002521882.1| (e_value=4e-178) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|P0C042|Y4597_ARATH (e_value=7e-106) Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1;; (*TAIR) AT1G14590.1 (e_value=1e-163) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:4998957-5000617 REVERSE LENGTH=386;; (*ITAG) Solyc02g021230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:12939464-12943912 transcript_region:SL2.40ch02:12939464..12943912+ functional_description:"Regulatory protein (AHRD V1 **-- Q8LFS2_ARATH)"; NbS00024385g0009.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|112; (*GB) gi|297738315|emb|CBI27516.3| (e_value=8e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6F6B5|ARC3_ARATH (e_value=3e-33) Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 OS=Arabidopsis thaliana GN=ARC3 PE=1 SV=2;; (*TAIR) AT1G75010.1 (e_value=2e-34) | Symbols: ARC3 | GTP binding | chr1:28164994-28169941 REVERSE LENGTH=741;; (*ITAG) Solyc01g007880.2.1 (e_value=4e-38) genomic_reference:SL2.40ch01 gene_region:2041549-2055134 transcript_region:SL2.40ch01:2041549..2055134- go_terms:GO:0005515 functional_description:"MORN repeat protein (AHRD V1 *--- D4V7H0_BACVU); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; GO:0005515 NbS00024385g0011.1 protein AED:0.44 eAED:0.71 QI:0|0|0|0.66|0|0|3|0|112 NbS00014644g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|474; (*GB) gi|47824984|gb|AAT38757.1| (e_value=0.0) Putative phytochrome kinase substrate 1, identical [Solanum demissum];; (*SWP) sp|Q9SWI1|PKS1_ARATH (e_value=8e-33) Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2;; (*TAIR) AT2G02950.1 (e_value=6e-34) | Symbols: PKS1 | phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439;; (*ITAG) Solyc05g007480.1.1 (e_value=2e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:2043903-2045264 transcript_region:SL2.40ch05:2043903..2045264- go_terms:GO:0005515 functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; GO:0005515 NbS00014644g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.42|1|1|1|7|0|618; (*GB) gi|142942405|gb|ABO92980.1| (e_value=0.0) putative methyltransferase [Solanum tuberosum];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc05g007490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2047102-2053065 transcript_region:SL2.40ch05:2047102..2053065- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00041478g0004.1 protein AED:0.33 eAED:0.35 QI:0|0|0.5|1|1|1|2|373|147 NbS00041478g0006.1 protein AED:0.27 eAED:0.27 QI:227|1|1|1|0.46|0.57|14|318|483; (*GB) gi|225459409|ref|XP_002285818.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260778 [Vitis vinifera];; (*TAIR) AT4G08540.1 (e_value=0.0) | Symbols: | DNA-directed RNA polymerase II protein | chr4:5433760-5436326 FORWARD LENGTH=473;; (*ITAG) Solyc04g072440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57042643-57050951 transcript_region:SL2.40ch04:57042643..57050951+ functional_description:"MRNA complete cds clone RAFL23-27-B01 (AHRD V1 **-- Q67Z09_ARATH)"; NbS00024462g0005.1 protein AED:0.31 eAED:0.31 QI:144|0.73|0.81|1|0.86|0.93|16|0|440; (*GB) gi|225433255|ref|XP_002285452.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 72 [Vitis vinifera];; (*SWP) sp|Q9AV81|PUB72_ORYSJ (e_value=0.0) U-box domain-containing protein 72 OS=Oryza sativa subsp. japonica GN=PUB72 PE=2 SV=1;; (*TAIR) AT1G04510.2 (e_value=0.0) | Symbols: MAC3A | MOS4-associated complex 3A | chr1:1226749-1230592 FORWARD LENGTH=523;; (*ITAG) Solyc09g090660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65460983-65469080 transcript_region:SL2.40ch09:65460983..65469080+ go_terms:GO:0042802 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042802 NbS00015230g0002.1 protein AED:0.04 eAED:0.05 QI:0|0.8|0.54|1|1|1|11|0|1654; (*GB) gi|356575829|ref|XP_003556039.1| (e_value=6e-162) PREDICTED: protein TIME FOR COFFEE-like [Glycine max];; (*SWP) sp|Q94KE2|TIC_ARATH (e_value=3e-113) Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2;; (*TAIR) AT3G22380.2 (e_value=2e-114) | Symbols: TIC | time for coffee | chr3:7913181-7918967 FORWARD LENGTH=1555;; (*ITAG) Solyc09g075830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62958838-62965734 transcript_region:SL2.40ch09:62958838..62965734+ functional_description:"Time for coffee (AHRD V1 *--- D7L1P0_ARALY)"; NbS00008238g0005.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|212; (*GB) gi|363807768|ref|NP_001242687.1| (e_value=5e-47) uncharacterized protein LOC100801479 [Glycine max];; (*SWP) sp|Q00466|HAT7_ARATH (e_value=9e-43) Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4;; (*TAIR) AT5G15150.1 (e_value=7e-44) | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 | chr5:4913951-4915609 REVERSE LENGTH=314;; (*ITAG) Solyc02g087840.2.1 (e_value=6e-78) genomic_reference:SL2.40ch02 gene_region:44675284-44676918 transcript_region:SL2.40ch02:44675284..44676918- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00008238g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|406; (*GB) gi|225452759|ref|XP_002277734.1| (e_value=9e-144) PREDICTED: uncharacterized protein At5g39865-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=3e-104) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT3G28850.1 (e_value=2e-105) | Symbols: | Glutaredoxin family protein | chr3:10848669-10849955 FORWARD LENGTH=428;; (*ITAG) Solyc02g087850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44693201-44694460 transcript_region:SL2.40ch02:44693201..44694460+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LM49_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00044393g0007.1 protein AED:0.18 eAED:0.18 QI:0|1|0.77|1|1|1|9|0|1026; (*GB) gi|359491495|ref|XP_002278062.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268025 [Vitis vinifera];; (*SWP) sp|Q54NA6|MYBL_DICDI (e_value=9e-44) Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1;; (*TAIR) AT3G18100.1 (e_value=2e-162) | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r1 | chr3:6200689-6204583 FORWARD LENGTH=847;; (*ITAG) Solyc03g119050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61811472-61822308 transcript_region:SL2.40ch03:61811472..61822308- go_terms:GO:0006508,GO:0003677,GO:0045449 functional_description:"Myb (AHRD V1 *-*- Q948S5_TOBAC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0006508,GO:0003677,GO:0045449 NbS00044393g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.57|1|1|0.85|7|0|418; (*GB) gi|225456094|ref|XP_002281306.1| (e_value=1e-156) PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera];; (*SWP) sp|Q8S9K7|PEX32_ARATH (e_value=7e-133) Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1;; (*TAIR) AT1G48635.1 (e_value=6e-134) | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983951-17985966 FORWARD LENGTH=364;; (*ITAG) Solyc03g119030.2.1 (e_value=5e-161) genomic_reference:SL2.40ch03 gene_region:61795368-61806928 transcript_region:SL2.40ch03:61795368..61806928- go_terms:GO:0005779 functional_description:"Peroxisomal biogenesis factor 3 (AHRD V1 ***- Q28F64_XENTR); contains Interpro domain(s) IPR006966 Peroxin-3 "; GO:0005779 NbS00044393g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0.25|0.75|0.33|0.75|4|0|404; (*GB) gi|1749825|emb|CAA96528.1| (e_value=0.0) G protein beta-subunit-like protein [Nicotiana plumbaginifolia];; (*SWP) sp|P49026|GBLP_TOBAC (e_value=0.0) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1;; (*TAIR) AT3G18130.1 (e_value=3e-173) | Symbols: RACK1C_AT | receptor for activated C kinase 1C | chr3:6211109-6212371 REVERSE LENGTH=326;; (*ITAG) Solyc03g119040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61807988-61810035 transcript_region:SL2.40ch03:61807988..61810035- go_terms:GO:0005080,GO:0000166 functional_description:"Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B4FKM1_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005080,GO:0000166 NbS00004624g0001.1 protein AED:0.30 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|165; (*ITAG) Solyc06g035800.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00046775g0003.1 protein AED:0.04 eAED:0.04 QI:58|1|1|1|0|0.25|4|298|221; (*GB) gi|297737601|emb|CBI26802.3| (e_value=3e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01818.1 (e_value=3e-59) | Symbols: | PLATZ transcription factor family protein | chr2:353552-355370 REVERSE LENGTH=222;; (*ITAG) Solyc04g008090.2.1 (e_value=7e-124) genomic_reference:SL2.40ch04 gene_region:1744812-1747910 transcript_region:SL2.40ch04:1744812..1747910- go_terms:GO:0008270 functional_description:"Zinc-binding protein (AHRD V1 **-* Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0008270 NbS00002405g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|137; (*GB) gi|24370975|emb|CAA70968.2| (e_value=2e-71) amino acid transporter [Solanum tuberosum];; (*SWP) sp|P92934|AAP6_ARATH (e_value=3e-66) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=2e-67) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc04g077050.2.1 (e_value=2e-73) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00005471g0002.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|308; (*GB) gi|224130152|ref|XP_002320765.1| (e_value=3e-59) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=5e-14) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=4e-15) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc01g091760.2.1 (e_value=1e-71) genomic_reference:SL2.40ch01 gene_region:77102050-77103010 transcript_region:SL2.40ch01:77102050..77103010- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00005471g0005.1 protein AED:0.28 eAED:0.32 QI:353|1|0.8|1|0.75|0.6|5|0|275; (*GB) gi|296089073|emb|CBI38776.3| (e_value=1e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|P92965|RSP40_ARATH (e_value=6e-41) Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2;; (*TAIR) AT4G25500.3 (e_value=2e-42) | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025850-13027243 FORWARD LENGTH=317;; (*ITAG) Solyc01g091750.2.1 (e_value=8e-76) genomic_reference:SL2.40ch01 gene_region:77096104-77100887 transcript_region:SL2.40ch01:77096104..77100887- go_terms:GO:0003676,GO:0000166 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- D8L816_9POAL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00017652g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|395; (*GB) gi|2739279|emb|CAA11153.1| (e_value=1e-91) short chain alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-47) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT1G52340.1 (e_value=4e-46) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc12g056710.1.1 (e_value=4e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48159524-48160596 transcript_region:SL2.40ch12:48159524..48160596- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00010977g0007.1 protein AED:0.35 eAED:0.35 QI:93|0.88|0.9|1|0.77|0.8|10|112|440; (*GB) gi|255545490|ref|XP_002513805.1| (e_value=1e-133) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*SWP) sp|Q80W98|SGTB_RAT (e_value=1e-25) Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1;; (*TAIR) AT4G08320.2 (e_value=1e-124) | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:5252853-5254990 FORWARD LENGTH=427;; (*ITAG) Solyc11g012900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5682714-5696581 transcript_region:SL2.40ch11:5682714..5696581- go_terms:GO:0005488 functional_description:"Small glutamine-rich tetratricopeptide repeat-containing protein A (AHRD V1 *--- C1BM93_OSMMO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00019324g0007.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.6|0.8|0.75|0.6|5|502|372; (*GB) gi|147841694|emb|CAN68658.1| (e_value=4e-50) hypothetical protein VITISV_015697 [Vitis vinifera];; (*TAIR) AT3G09730.1 (e_value=5e-22) | Symbols: | unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). | chr3:2984018-2986260 FORWARD LENGTH=397;; (*ITAG) Solyc09g007460.2.1 (e_value=3e-125) genomic_reference:SL2.40ch09 gene_region:1021194-1025893 transcript_region:SL2.40ch09:1021194..1025893+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019324g0009.1 protein AED:0.14 eAED:0.15 QI:221|0|0.5|1|0|0|2|0|191; (*GB) gi|225439908|ref|XP_002279741.1| (e_value=2e-94) PREDICTED: dolichyldiphosphatase 1 [Vitis vinifera];; (*SWP) sp|Q86YN1|DOPP1_HUMAN (e_value=7e-33) Dolichyldiphosphatase 1 OS=Homo sapiens GN=DOLPP1 PE=1 SV=1;; (*TAIR) AT5G03080.1 (e_value=3e-92) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr5:721976-722656 FORWARD LENGTH=226;; (*ITAG) Solyc09g007450.2.1 (e_value=9e-119) genomic_reference:SL2.40ch09 gene_region:1006615-1008003 transcript_region:SL2.40ch09:1006615..1008003+ go_terms:GO:0047874 functional_description:"Dolichyldiphosphatase 1 (AHRD V1 **-* B6UB05_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0047874 NbS00019324g0011.1 protein AED:0.06 eAED:0.36 QI:0|0|0|1|0|0|2|0|371; (*GB) gi|225439912|ref|XP_002275200.1| (e_value=4e-42) PREDICTED: uncharacterized protein LOC100249937 [Vitis vinifera];; (*TAIR) AT5G03110.1 (e_value=5e-12) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:730346-731197 FORWARD LENGTH=283;; (*ITAG) Solyc09g007470.1.1 (e_value=9e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1030103-1030927 transcript_region:SL2.40ch09:1030103..1030927+ go_terms:GO:0003677 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-** Q9LYX4_ARATH)"; GO:0003677 NbS00026802g0014.1 protein AED:0.26 eAED:0.26 QI:21|0.75|0.8|1|0.75|0.6|5|162|441; (*GB) gi|225464148|ref|XP_002266006.1| (e_value=3e-153) PREDICTED: uncharacterized protein LOC100256822 isoform 1 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=2e-146) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc11g007040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1521934-1525575 transcript_region:SL2.40ch11:1521934..1525575- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00026802g0013.1 protein AED:0.17 eAED:0.20 QI:60|0.64|0.8|1|0.42|0.66|15|503|847; (*GB) gi|296087749|emb|CBI35005.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G30240.1 (e_value=5e-140) | Symbols: | FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=825;; (*ITAG) Solyc11g007010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1497059-1505072 transcript_region:SL2.40ch11:1497059..1505072+ go_terms:GO:0005488 functional_description:"Proline-, glutamic acid- and leucine-rich protein 1 (AHRD V1 *--- PELP1_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00026802g0012.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.66|1|0.87|0.88|9|0|395; (*GB) gi|157042753|gb|ABV02028.1| (e_value=0.0) mevalonate diphosphate decarboxylase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q5U403|MVD1_DANRE (e_value=7e-107) Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1;; (*TAIR) AT3G54250.1 (e_value=0.0) | Symbols: | GHMP kinase family protein | chr3:20082468-20084688 REVERSE LENGTH=419;; (*ITAG) Solyc11g007020.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1510020-1515652 transcript_region:SL2.40ch11:1510020..1515652+ go_terms:GO:0016310,GO:0008299 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 ***- Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0016310,GO:0008299 NbS00012150g0101.1 protein AED:0.12 eAED:0.12 QI:120|0|0.5|1|0|0.5|2|436|141 NbS00012150g0111.1 protein AED:0.27 eAED:0.27 QI:0|0.75|1|1|0.25|0.4|5|355|179 NbS00012150g0110.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|0.33|0.5|4|288|92 NbS00012150g0102.1 protein AED:0.38 eAED:0.44 QI:41|0.33|0.5|1|1|1|4|0|346 NbS00009732g0021.1 protein AED:0.04 eAED:0.05 QI:4|0.93|0.88|1|0.84|0.85|34|600|2829; (*GB) gi|297736774|emb|CBI25975.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BX70|VP13C_MOUSE (e_value=2e-32) Vacuolar protein sorting-associated protein 13C OS=Mus musculus GN=Vps13c PE=1 SV=2;; (*TAIR) AT1G48090.1 (e_value=0.0) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00009732g0017.1 protein AED:0.27 eAED:0.27 QI:39|0.6|0.33|0.66|0.8|0.83|6|0|391; (*GB) gi|297736774|emb|CBI25975.3| (e_value=2e-154) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G48090.1 (e_value=6e-141) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00009732g0022.1 protein AED:0.27 eAED:0.28 QI:90|0.9|0.90|1|0.9|0.81|11|248|411; (*GB) gi|50400860|sp|Q43497.1|MDAR_SOLLC (e_value=0.0) RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase;; (*SWP) sp|Q43497|MDAR_SOLLC (e_value=0.0) Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1;; (*TAIR) AT3G52880.1 (e_value=0.0) | Symbols: ATMDAR1, MDAR1 | monodehydroascorbate reductase 1 | chr3:19601477-19604366 REVERSE LENGTH=434;; (*ITAG) Solyc09g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2835367-2840425 transcript_region:SL2.40ch09:2835367..2840425+ go_terms:GO:0016656 functional_description:"Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0016656 NbS00009732g0006.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|255575685|ref|XP_002528742.1| (e_value=4e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G52740.1 (e_value=7e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546446-19546868 REVERSE LENGTH=140;; (*ITAG) Solyc09g009420.1.1 (e_value=1e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:2856789-2857253 transcript_region:SL2.40ch09:2856789..2857253- functional_description:"Unknown Protein (AHRD V1)"; NbS00009732g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|297735471|emb|CBI17911.3| (e_value=5e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FH50|APO3_ARATH (e_value=1e-47) APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1;; (*TAIR) AT5G61930.2 (e_value=7e-49) | Symbols: APO3 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:24866230-24867665 REVERSE LENGTH=402;; (*ITAG) Solyc09g009400.2.1 (e_value=6e-69) genomic_reference:SL2.40ch09 gene_region:2840443-2842868 transcript_region:SL2.40ch09:2840443..2842868- functional_description:"APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00053751g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|598; (*GB) gi|308513535|gb|ADO33166.1| (e_value=0.0) glycerol-3-phosphate O-acyltransferase [Echium pitardii];; (*SWP) sp|Q5XF03|GPAT8_ARATH (e_value=0.0) Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1;; (*TAIR) AT4G00400.1 (e_value=0.0) | Symbols: GPAT8, AtGPAT8 | glycerol-3-phosphate acyltransferase 8 | chr4:174312-176734 REVERSE LENGTH=500;; (*ITAG) Solyc01g094700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77905683-77908620 transcript_region:SL2.40ch01:77905683..77908620+ go_terms:GO:0004366,GO:0003841 functional_description:"Glycerol-3-phosphate acyltransferase 4 (AHRD V1 **** D7KQ54_ARALY); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00020734g0004.1 protein AED:0.09 eAED:0.09 QI:233|0.5|0|0.66|1|1|3|0|101; (*GB) gi|356513026|ref|XP_003525215.1| (e_value=3e-35) PREDICTED: THO complex subunit 2-like [Glycine max];; (*TAIR) AT1G24706.1 (e_value=4e-33) | Symbols: THO2, AtTHO2 | THO2 | chr1:8742210-8755243 FORWARD LENGTH=1804;; (*ITAG) Solyc05g017890.2.1 (e_value=2e-50) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00008990g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0|0|3|0|144; (*ITAG) Solyc03g044840.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00009117g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|3|0|222; (*GB) gi|225464910|ref|XP_002273491.1| (e_value=6e-71) PREDICTED: germin-like protein 9-3 [Vitis vinifera];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=5e-53) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT3G62020.1 (e_value=1e-35) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc11g068590.1.1 (e_value=1e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50336707-50337318 transcript_region:SL2.40ch11:50336707..50337318- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00009117g0003.1 protein AED:0.08 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|179; (*GB) gi|224104929|ref|XP_002313622.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=2e-48) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT1G09560.1 (e_value=7e-21) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc11g068570.1.1 (e_value=3e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50334139-50334759 transcript_region:SL2.40ch11:50334139..50334759- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00030637g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|255571109|ref|XP_002526505.1| (e_value=4e-122) ATPUP11, putative [Ricinus communis];; (*SWP) sp|Q9LPF6|PUP11_ARATH (e_value=4e-114) Probable purine permease 11 OS=Arabidopsis thaliana GN=PUP11 PE=1 SV=1;; (*TAIR) AT1G44750.1 (e_value=3e-115) | Symbols: ATPUP11, PUP11 | purine permease 11 | chr1:16892688-16895168 FORWARD LENGTH=379;; (*ITAG) Solyc01g088550.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:75092333-75095470 transcript_region:SL2.40ch01:75092333..75095470- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00048507g0005.1 protein AED:0.08 eAED:0.08 QI:794|0.76|0.85|1|0.61|0.64|14|329|774; (*GB) gi|350536917|ref|NP_001234783.1| (e_value=0.0) auxin response factor 8 [Solanum lycopersicum];; (*SWP) sp|Q9FGV1|ARFH_ARATH (e_value=0.0) Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2;; (*TAIR) AT5G37020.1 (e_value=0.0) | Symbols: ARF8, ATARF8 | auxin response factor 8 | chr5:14630151-14634106 FORWARD LENGTH=811;; (*ITAG) Solyc02g037530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21756443-21766699 transcript_region:SL2.40ch02:21756443..21766699+ go_terms:GO:0003700 functional_description:"Auxin response factor 8 (AHRD V1 **** A7L5C4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00037673g0005.1 protein AED:0.45 eAED:0.45 QI:0|0.75|0.2|1|0.75|0.8|5|244|176; (*GB) gi|297745191|emb|CBI39183.3| (e_value=2e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G43235.1 (e_value=2e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17968910-17970822 REVERSE LENGTH=437;; (*ITAG) Solyc09g098530.2.1 (e_value=3e-86) genomic_reference:SL2.40ch09 gene_region:67604986-67611760 transcript_region:SL2.40ch09:67604986..67611760+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037673g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.5|1|0.66|0.5|4|449|272; (*GB) gi|255549220|ref|XP_002515664.1| (e_value=1e-120) chitinase, putative [Ricinus communis];; (*SWP) sp|Q9MA41|CTL1_ARATH (e_value=3e-112) Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1;; (*TAIR) AT1G05850.1 (e_value=2e-113) | Symbols: POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1 | Chitinase family protein | chr1:1766833-1768117 REVERSE LENGTH=321;; (*ITAG) Solyc09g098540.2.1 (e_value=2e-153) genomic_reference:SL2.40ch09 gene_region:67611276-67612904 transcript_region:SL2.40ch09:67611276..67612904- go_terms:GO:0005975,GO:0016998 functional_description:"Chitinase-like protein (AHRD V1 ***- Q6JX03_GOSHI); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0005975,GO:0016998 NbS00041106g0001.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|100 NbS00008290g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0|0|4|0|379; (*GB) gi|225445480|ref|XP_002285159.1| (e_value=2e-169) PREDICTED: xylosyltransferase 1-like [Vitis vinifera];; (*TAIR) AT5G15050.1 (e_value=2e-141) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc12g006490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1001341-1005831 transcript_region:SL2.40ch12:1001341..1005831- go_terms:GO:0016020 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-- B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016020 NbS00008290g0103.1 protein AED:0.38 eAED:0.38 QI:39|0.5|0.6|1|1|1|5|98|117 NbS00008290g0106.1 protein AED:0.00 eAED:0.00 QI:291|1|1|1|0|0|3|234|67 NbS00008290g0108.1 protein AED:0.11 eAED:0.12 QI:95|1|0.66|1|1|1|3|0|352 NbS00027916g0002.1 protein AED:0.13 eAED:0.13 QI:306|0.9|0.90|1|0.9|0.81|11|930|627; (*GB) gi|297734516|emb|CBI15763.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23627|SYGM1_ARATH (e_value=0.0) Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1;; (*TAIR) AT1G29880.1 (e_value=0.0) | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729;; (*ITAG) Solyc03g118170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61164519-61169758 transcript_region:SL2.40ch03:61164519..61169758- go_terms:GO:0004820,GO:0046983 functional_description:"Glycyl-tRNA synthetase (AHRD V1 **** D7KEM8_ARALY); contains Interpro domain(s) IPR002315 Glycyl-tRNA synthetase, alpha2 dimer "; GO:0004820,GO:0046983 NbS00027916g0013.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.66|0.88|1|1|9|0|660; (*GB) gi|255577358|ref|XP_002529559.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8VYZ0|ORTH2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1;; (*TAIR) AT1G57820.1 (e_value=0.0) | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645;; (*ITAG) Solyc05g023680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:28960621-28965003 transcript_region:SL2.40ch05:28960621..28965003+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase UHRF1 (AHRD V1 *--* UHRF1_RAT); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0004842 NbS00027916g0020.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|0.33|0.5|4|0|460; (*GB) gi|7227894|sp|Q40505.1|FL2_TOBAC (e_value=0.0) RecName: Full=Floricaula/leafy homolog 2; AltName: Full=NFL2;; (*SWP) sp|Q40505|FL2_TOBAC (e_value=0.0) Floricaula/leafy homolog 2 OS=Nicotiana tabacum GN=FL2 PE=2 SV=1;; (*TAIR) AT5G61850.1 (e_value=8e-99) | Symbols: LFY, LFY3 | floral meristem identity control protein LEAFY (LFY) | chr5:24844295-24846933 FORWARD LENGTH=420;; (*ITAG) Solyc03g118160.1.1 (e_value=8e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61162449-61164404 transcript_region:SL2.40ch03:61162449..61164404+ go_terms:GO:0008134 functional_description:"FLORICAULA/LEAFY-like protein (AHRD V1 ***- Q9LDP5_SOLLC); contains Interpro domain(s) IPR002910 Floricaula/leafy protein "; GO:0008134 NbS00027916g0012.1 protein AED:0.32 eAED:0.32 QI:356|1|1|1|0.5|0.33|3|650|42 NbS00007807g0004.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|868; (*GB) gi|147843896|emb|CAN81597.1| (e_value=5e-40) hypothetical protein VITISV_039396 [Vitis vinifera];; (*TAIR) AT3G60380.1 (e_value=7e-13) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). | chr3:22316913-22319144 REVERSE LENGTH=743;; (*ITAG) Solyc01g090440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75887262-75890317 transcript_region:SL2.40ch01:75887262..75890317- functional_description:"Unknown Protein (AHRD V1)"; NbS00007012g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|356539989|ref|XP_003538474.1| (e_value=4e-30) PREDICTED: RING-H2 finger protein ATL66-like [Glycine max];; (*ITAG) Solyc06g051250.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30968530-30969006 transcript_region:SL2.40ch06:30968530..30969006+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007012g0001.1 protein AED:0.24 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|74 NbS00048978g0004.1 protein AED:0.07 eAED:0.08 QI:212|0.71|0.5|1|0.57|0.75|8|0|500; (*GB) gi|255559677|ref|XP_002520858.1| (e_value=5e-54) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT2G24370.1 (e_value=5e-53) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc12g017840.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:7545973-7550927 transcript_region:SL2.40ch12:7545973..7550927+ go_terms:GO:0006950 functional_description:"Protein kinase family protein (AHRD V1 ***- Q1PF03_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00050687g0003.1 protein AED:0.00 eAED:0.00 QI:28|1|0.66|1|0.5|0.66|3|0|187; (*GB) gi|225430639|ref|XP_002268296.1| (e_value=2e-108) PREDICTED: GDSL esterase/lipase At5g33370 [Vitis vinifera];; (*SWP) sp|Q9M8Y5|LTL1_ARATH (e_value=2e-101) GDSL esterase/lipase LTL1 OS=Arabidopsis thaliana GN=LTL1 PE=2 SV=1;; (*TAIR) AT3G04290.1 (e_value=1e-102) | Symbols: ATLTL1, LTL1 | Li-tolerant lipase 1 | chr3:1133620-1136223 REVERSE LENGTH=366;; (*ITAG) Solyc04g050730.2.1 (e_value=2e-117) genomic_reference:SL2.40ch04 gene_region:47205422-47209535 transcript_region:SL2.40ch04:47205422..47209535- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00051902g0007.1 protein AED:0.09 eAED:0.11 QI:16|0.6|0.33|1|0.6|0.66|6|0|1275; (*GB) gi|297736548|emb|CBI25419.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9GQN5|ATRX_DROME (e_value=2e-16) Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2;; (*TAIR) AT5G20420.1 (e_value=0.0) | Symbols: CHR42 | chromatin remodeling 42 | chr5:6899015-6903266 REVERSE LENGTH=1261;; (*ITAG) Solyc06g050510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29683679-29690586 transcript_region:SL2.40ch06:29683679..29690586- go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2ULH2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00051902g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|255559547|ref|XP_002520793.1| (e_value=7e-71) ATP-dependent helicase, putative [Ricinus communis];; (*SWP) sp|O12944|RAD54_CHICK (e_value=8e-19) DNA repair and recombination protein RAD54-like (Fragment) OS=Gallus gallus GN=RAD54L PE=2 SV=1;; (*TAIR) AT3G42670.1 (e_value=1e-72) | Symbols: CHR38, CLSY | chromatin remodeling 38 | chr3:14755906-14760085 REVERSE LENGTH=1256;; (*ITAG) Solyc06g050510.2.1 (e_value=7e-92) genomic_reference:SL2.40ch06 gene_region:29683679-29690586 transcript_region:SL2.40ch06:29683679..29690586- go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2ULH2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00007877g0014.1 protein AED:0.30 eAED:0.30 QI:0|0|0.5|0.5|0|0|2|0|224 NbS00007877g0013.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|1|0.8|5|292|397; (*GB) gi|48209875|gb|AAT40481.1| (e_value=0.0) putative protein kinase [Solanum demissum];; (*SWP) sp|O49840|APK2B_ARATH (e_value=0.0) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=0.0) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc05g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1733186-1736871 transcript_region:SL2.40ch05:1733186..1736871- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00051479g0002.1 protein AED:0.36 eAED:0.36 QI:0|0.83|0.71|1|0.16|0.28|7|317|277; (*GB) gi|224135739|ref|XP_002327292.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT4G09970.1 (e_value=2e-14) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6246038-6247597 FORWARD LENGTH=250;; (*ITAG) Solyc11g031970.1.1 (e_value=1e-133) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:20883489-20886953 transcript_region:SL2.40ch11:20883489..20886953+ go_terms:GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00044164g0003.1 protein AED:0.08 eAED:0.08 QI:253|0.77|0.8|1|0.33|0.3|10|328|214; (*GB) gi|255551457|ref|XP_002516774.1| (e_value=9e-122) spermine synthase, putative [Ricinus communis];; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=1e-97) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.2 (e_value=7e-99) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591070 REVERSE LENGTH=332;; (*ITAG) Solyc09g075900.2.1 (e_value=6e-143) genomic_reference:SL2.40ch09 gene_region:63034804-63038210 transcript_region:SL2.40ch09:63034804..63038210- go_terms:GO:0016768,GO:0010487 functional_description:"Spermidine synthase (AHRD V1 **** D5MHP1_9BACT); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0016768,GO:0010487 NbS00047955g0008.1 protein AED:0.19 eAED:0.19 QI:54|0.90|0.75|1|0.72|0.83|12|0|617; (*GB) gi|365189292|dbj|BAL42333.1| (e_value=0.0) Heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P35016|ENPL_CATRO (e_value=0.0) Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1;; (*TAIR) AT4G24190.1 (e_value=0.0) | Symbols: SHD, HSP90.7, AtHsp90.7, AtHsp90-7 | Chaperone protein htpG family protein | chr4:12551902-12555851 REVERSE LENGTH=823;; (*ITAG) Solyc04g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63110553-63116088 transcript_region:SL2.40ch04:63110553..63116088- go_terms:GO:0042623,GO:0050750 functional_description:"Chaperone protein htpG (AHRD V1 **-- HTPG_MYCA1); contains Interpro domain(s) IPR015566 Molecular chaperone, heat shock protein, endoplasmin "; GO:0042623,GO:0050750 NbS00002908g0002.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|225469318|ref|XP_002270367.1| (e_value=5e-42) PREDICTED: uncharacterized protein LOC100255607 [Vitis vinifera];; (*TAIR) AT5G62150.1 (e_value=2e-30) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:24958325-24958633 FORWARD LENGTH=102;; (*ITAG) Solyc03g026370.1.1 (e_value=5e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8185407-8185742 transcript_region:SL2.40ch03:8185407..8185742+ go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7MLA8_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00016614g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|0|0|2|0|96; (*GB) gi|147768371|emb|CAN75876.1| (e_value=3e-54) hypothetical protein VITISV_029713 [Vitis vinifera];; (*SWP) sp|Q9ZPY2|LAC6_ARATH (e_value=3e-48) Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1;; (*TAIR) AT2G46570.1 (e_value=2e-49) | Symbols: LAC6 | laccase 6 | chr2:19126872-19129069 FORWARD LENGTH=569;; (*ITAG) Solyc05g050540.2.1 (e_value=5e-63) genomic_reference:SL2.40ch05 gene_region:59817624-59820559 transcript_region:SL2.40ch05:59817624..59820559- go_terms:GO:0004322 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00002704g0004.1 protein AED:0.01 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|225443980|ref|XP_002274093.1| (e_value=9e-28) PREDICTED: F-box protein SKIP19 [Vitis vinifera];; (*SWP) sp|Q9M0U7|FB221_ARATH (e_value=2e-25) Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=4 SV=2;; (*TAIR) AT4G05475.1 (e_value=1e-26) | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957 REVERSE LENGTH=309;; (*ITAG) Solyc08g006920.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1492121-1494699 transcript_region:SL2.40ch08:1492121..1494699- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 4 (AHRD V1 ***- FBL4_ARATH); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515,GO:0004842 NbS00002704g0011.1 protein AED:0.32 eAED:0.32 QI:221|0.33|0.5|1|0.66|0.75|4|0|138; (*GB) gi|58892561|gb|AAW83128.1| (e_value=6e-72) photosystem I reaction center subunit X PSI-K [Nicotiana benthamiana];; (*SWP) sp|Q9SUI5|PSAK_ARATH (e_value=3e-61) Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2;; (*TAIR) AT1G30380.1 (e_value=3e-62) | Symbols: PSAK | photosystem I subunit K | chr1:10722325-10723013 FORWARD LENGTH=130;; (*ITAG) Solyc08g006930.2.1 (e_value=5e-66) genomic_reference:SL2.40ch08 gene_region:1496863-1500142 transcript_region:SL2.40ch08:1496863..1500142- go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit X psaK (AHRD V1 ***- Q84QE6_TOBAC); contains Interpro domain(s) IPR017493 Photosystem I reaction center, PsaK, plant "; GO:0016020 NbC24697222g0001.1 protein AED:0.21 eAED:0.59 QI:0|0|0.5|1|0|0|2|0|69; (*GB) gi|359490943|ref|XP_003634188.1| (e_value=2e-34) PREDICTED: uncharacterized protein LOC100254135 isoform 2 [Vitis vinifera];; (*TAIR) AT1G49040.2 (e_value=1e-33) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18142007-18148826 REVERSE LENGTH=909;; (*ITAG) Solyc03g119650.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00055137g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.75|0.8|5|0|333; (*GB) gi|225432062|ref|XP_002280604.1| (e_value=2e-162) PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera];; (*SWP) sp|P29344|RR1_SPIOL (e_value=6e-161) 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1;; (*TAIR) AT5G30510.1 (e_value=7e-150) | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416;; (*ITAG) Solyc01g057830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56934925-56939761 transcript_region:SL2.40ch01:56934925..56939761+ go_terms:GO:0005840,GO:0003723 functional_description:"30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0005840,GO:0003723 NbC24360106g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|93; (*GB) gi|224092566|ref|XP_002309665.1| (e_value=4e-53) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=1e-39) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=8e-41) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029120.1.1 (e_value=9e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:22727475-22749048 transcript_region:SL2.40ch08:22727475..22749048+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbC25608161g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|3|425|107; (*GB) gi|390134563|gb|AFL56269.1| (e_value=2e-45) cyclophilin-like peptidyl-prolyl cis-trans isomerase [Cirsium arvense];; (*SWP) sp|Q94A16|CP21C_ARATH (e_value=5e-34) Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2;; (*TAIR) AT3G66654.2 (e_value=8e-37) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:2088694-2090297 FORWARD LENGTH=236;; (*ITAG) Solyc09g008410.2.1 (e_value=4e-69) genomic_reference:SL2.40ch09 gene_region:1861145-1869636 transcript_region:SL2.40ch09:1861145..1869636- go_terms:GO:0051082 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D8SL30_SELML); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082 NbS00017971g0004.1 protein AED:0.24 eAED:0.24 QI:284|1|1|1|1|1|6|267|441; (*GB) gi|356565172|ref|XP_003550818.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=1e-180) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc07g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2672425-2675811 transcript_region:SL2.40ch07:2672425..2675811+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00051813g0002.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|296086302|emb|CBI31743.3| (e_value=3e-54) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01130.1 (e_value=7e-22) | Symbols: | Protein of unknown function (DUF674) | chr5:47642-49174 FORWARD LENGTH=452;; (*ITAG) Solyc06g069820.2.1 (e_value=2e-93) genomic_reference:SL2.40ch06 gene_region:39865279-39866356 transcript_region:SL2.40ch06:39865279..39866356+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00057845g0001.1 protein AED:0.07 eAED:0.10 QI:0|1|0.5|1|0|0|2|232|462; (*GB) gi|49533769|gb|AAT66768.1| (e_value=0.0) T24P13.14, putative [Solanum demissum];; (*TAIR) AT1G26761.1 (e_value=4e-159) | Symbols: | Arabinanase/levansucrase/invertase | chr1:9250269-9251603 REVERSE LENGTH=444;; (*ITAG) Solyc05g007680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2173067-2174386 transcript_region:SL2.40ch05:2173067..2174386+ functional_description:"Laminin G sub domain 2 (AHRD V1 ***- B9LG59_CHLSY)"; NbS00005641g0004.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|295; (*GB) gi|53749473|gb|AAU90326.1| (e_value=6e-140) Putative kinase interacting protein, identical [Solanum demissum];; (*TAIR) AT1G48405.1 (e_value=7e-21) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:17884645-17885614 REVERSE LENGTH=297;; (*ITAG) Solyc03g098450.2.1 (e_value=4e-140) genomic_reference:SL2.40ch03 gene_region:54188352-54191657 transcript_region:SL2.40ch03:54188352..54191657- functional_description:"Protein Kinase interacting protein (AHRD V1 ***- B6TI58_MAIZE); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00005641g0014.1 protein AED:0.20 eAED:0.20 QI:331|0.25|0.4|1|0.75|0.8|5|210|207; (*GB) gi|53749491|gb|AAU90344.1| (e_value=8e-103) Putative TPR domain containing protein, identical [Solanum demissum];; (*TAIR) AT3G17670.1 (e_value=7e-56) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr3:6040857-6042012 FORWARD LENGTH=236;; (*ITAG) Solyc03g098440.2.1 (e_value=5e-105) genomic_reference:SL2.40ch03 gene_region:54184522-54188262 transcript_region:SL2.40ch03:54184522..54188262+ go_terms:GO:0005488 functional_description:"Small glutamine-rich tetratricopeptide repeat-containing protein A (AHRD V1 *--- C1BM93_OSMMO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00005641g0015.1 protein AED:0.31 eAED:0.36 QI:384|0.25|0.22|1|0.62|0.44|9|474|821; (*GB) gi|113205417|gb|AAU90328.2| (e_value=0.0) Pentatricopeptide repeat domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q9S7F4|PP206_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1;; (*TAIR) AT3G02010.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825;; (*ITAG) Solyc03g098420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54177254-54179882 transcript_region:SL2.40ch03:54177254..54179882+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2Q7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00027672g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0.71|1|0.66|0.57|7|10|470; (*GB) gi|350538763|ref|NP_001234870.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=2e-80) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT3G63240.1 (e_value=6e-109) | Symbols: | DNAse I-like superfamily protein | chr3:23364411-23366876 REVERSE LENGTH=547;; (*ITAG) Solyc02g087430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44457106-44459778 transcript_region:SL2.40ch02:44457106..44459778- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00027672g0007.1 protein AED:0.00 eAED:0.00 QI:277|1|1|1|0|0.33|3|378|352; (*GB) gi|225456983|ref|XP_002282140.1| (e_value=8e-178) PREDICTED: WD repeat-containing protein 85 isoform 1 [Vitis vinifera];; (*SWP) sp|Q55C80|WDR85_DICDI (e_value=3e-48) WD repeat-containing protein 85 homolog OS=Dictyostelium discoideum GN=wdr85 PE=3 SV=1;; (*TAIR) AT5G63010.1 (e_value=4e-152) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:25281739-25282967 FORWARD LENGTH=343;; (*ITAG) Solyc05g012300.1.1 (e_value=7e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:5576561-5577220 transcript_region:SL2.40ch05:5576561..5577220- go_terms:GO:0042802,GO:0000166 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MND7_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042802,GO:0000166 NbS00027672g0005.1 protein AED:0.54 eAED:0.54 QI:0|0.33|0.25|0.5|1|1|4|140|80 NbS00023009g0108.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|278 NbS00023009g0114.1 protein AED:0.15 eAED:0.15 QI:0|0.84|0.78|0.92|0.92|0.85|14|310|1173 NbS00034976g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|5|0|178; (*GB) gi|46399273|gb|AAS92257.1| (e_value=3e-123) putative pyridoxine biosynthesis protein [Nicotiana tabacum];; (*SWP) sp|Q8LAD0|PDX2_ARATH (e_value=5e-99) Pyridoxal biosynthesis protein PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1;; (*TAIR) AT5G60540.1 (e_value=4e-100) | Symbols: EMB2407, ATPDX2, PDX2 | pyridoxine biosynthesis 2 | chr5:24336874-24338647 REVERSE LENGTH=255;; (*ITAG) Solyc11g069290.1.1 (e_value=6e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50995781-51001324 transcript_region:SL2.40ch11:50995781..51001324- functional_description:"Glutamine amidotransferase subunit pdxT (AHRD V1 ***- B6SNW4_MAIZE); contains Interpro domain(s) IPR002161 SNO glutamine amidotransferase "; NbS00041278g0004.1 protein AED:0.02 eAED:0.02 QI:0|0.83|0.57|1|0.5|0.42|7|0|628; (*GB) gi|255576219|ref|XP_002529003.1| (e_value=9e-102) separase, putative [Ricinus communis];; (*TAIR) AT4G22970.1 (e_value=3e-81) | Symbols: RSW4, AESP, ESP | homolog of separase | chr4:12033703-12043572 REVERSE LENGTH=2180;; (*ITAG) Solyc01g104490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84706633-84726678 transcript_region:SL2.40ch01:84706633..84726678+ go_terms:GO:0005634,GO:0005622 functional_description:"Separin (AHRD V1 *--- C5JQX2_AJEDS); contains Interpro domain(s) IPR005314 Peptidase C50, separase "; GO:0005634,GO:0005622 NbS00017506g0012.1 protein AED:0.04 eAED:0.06 QI:0|0.33|0.5|0.75|0.66|0.5|4|0|342; (*GB) gi|359487036|ref|XP_003633507.1| (e_value=4e-99) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LES3|AI5L2_ARATH (e_value=2e-72) ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1;; (*TAIR) AT3G56850.1 (e_value=1e-73) | Symbols: AREB3, DPBF3 | ABA-responsive element binding protein 3 | chr3:21046554-21047894 REVERSE LENGTH=297;; (*ITAG) Solyc10g081350.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61775875-61780773 transcript_region:SL2.40ch10:61775875..61780773+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00017506g0011.1 protein AED:0.26 eAED:0.26 QI:22|0|0|1|0|0.5|2|0|128; (*GB) gi|10798640|emb|CAC12820.1| (e_value=2e-28) mitochondrial 2-oxoglutarate/malate carrier protein [Nicotiana tabacum];; (*TAIR) AT5G19760.1 (e_value=6e-25) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=2e-30) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00034569g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|88174757|gb|ABD39483.1| (e_value=2e-30) CYP82E2v2 [Nicotiana tabacum];; (*ITAG) Solyc04g007940.2.1 (e_value=3e-25) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00031069g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|1|1|5|0|597; (*GB) gi|356525782|ref|XP_003531502.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100806376 [Glycine max];; (*TAIR) AT5G45030.2 (e_value=0.0) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607;; (*ITAG) Solyc07g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65098815-65104106 transcript_region:SL2.40ch07:65098815..65104106+ go_terms:GO:0003824 functional_description:"Peptidase trypsin-like serine and cysteine proteases (Fragment) (AHRD V1 ***- A2Q138_MEDTR); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00016844g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|225426084|ref|XP_002276477.1| (e_value=1e-96) PREDICTED: disease resistance response protein 206 [Vitis vinifera];; (*SWP) sp|P13240|DR206_PEA (e_value=1e-72) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT4G23690.1 (e_value=2e-63) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr4:12339152-12339715 REVERSE LENGTH=187;; (*ITAG) Solyc08g081790.1.1 (e_value=1e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61912629-61913198 transcript_region:SL2.40ch08:61912629..61913198- functional_description:"Dirigent protein (AHRD V1 ***- Q9SDR7_FORIN); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00016399g0002.1 protein AED:0.36 eAED:0.36 QI:252|0|0.33|0.33|0.5|0.66|3|0|62 NbS00021068g0004.1 protein AED:0.10 eAED:0.10 QI:225|1|1|1|0.90|0.90|22|472|1075; (*GB) gi|359492219|ref|XP_002280236.2| (e_value=0.0) PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=0.0) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=0.0) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc04g081280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62902246-62914223 transcript_region:SL2.40ch04:62902246..62914223+ go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 **** A5WVY7_DANRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbS00026085g0013.1 protein AED:0.38 eAED:0.39 QI:0|1|0.5|1|0.66|0.75|4|117|253; (*GB) gi|225431984|ref|XP_002273100.1| (e_value=1e-137) PREDICTED: probable protein phosphatase 2C 42 [Vitis vinifera];; (*SWP) sp|Q0V7V2|P2C42_ARATH (e_value=1e-127) Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1;; (*TAIR) AT3G17090.1 (e_value=8e-129) | Symbols: | Protein phosphatase 2C family protein | chr3:5826984-5829327 FORWARD LENGTH=384;; (*ITAG) Solyc06g065920.2.1 (e_value=5e-159) genomic_reference:SL2.40ch06 gene_region:37702882-37707679 transcript_region:SL2.40ch06:37702882..37707679- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L6A8_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00026085g0014.1 protein AED:0.46 eAED:0.50 QI:0|0|0.5|1|0|0|2|0|107; (*GB) gi|356519920|ref|XP_003528616.1| (e_value=2e-39) PREDICTED: probable protein phosphatase 2C 42-like [Glycine max];; (*SWP) sp|Q0V7V2|P2C42_ARATH (e_value=2e-34) Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1;; (*TAIR) AT3G17090.1 (e_value=2e-35) | Symbols: | Protein phosphatase 2C family protein | chr3:5826984-5829327 FORWARD LENGTH=384;; (*ITAG) Solyc06g065920.2.1 (e_value=1e-43) genomic_reference:SL2.40ch06 gene_region:37702882-37707679 transcript_region:SL2.40ch06:37702882..37707679- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L6A8_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00026085g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|622; (*GB) gi|307136298|gb|ADN34122.1| (e_value=0.0) heat shock protein 70 [Cucumis melo subsp. melo];; (*TAIR) AT2G25290.3 (e_value=0.0) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc06g065910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37697428-37699660 transcript_region:SL2.40ch06:37697428..37699660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT4_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021299g0014.1 protein AED:0.15 eAED:0.15 QI:0|1|0.85|1|0.5|0.42|7|226|334; (*GB) gi|116788059|gb|ABK24740.1| (e_value=1e-68) unknown [Picea sitchensis];; (*SWP) sp|P93654|SYP22_ARATH (e_value=2e-58) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=2e-59) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc06g072760.2.1 (e_value=8e-90) genomic_reference:SL2.40ch06 gene_region:41260813-41262392 transcript_region:SL2.40ch06:41260813..41262392- go_terms:GO:0005484 functional_description:"Syntaxin (AHRD V1 ***- Q8LJR4_SOYBN); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00021299g0007.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|1|1|2|0|341; (*GB) gi|225427161|ref|XP_002279736.1| (e_value=5e-131) PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Vitis vinifera];; (*SWP) sp|Q9SBA5|ITPK1_ARATH (e_value=3e-110) Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=2e-111) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc06g072740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41252095-41253048 transcript_region:SL2.40ch06:41252095..41253048+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00021299g0010.1 protein AED:0.29 eAED:0.33 QI:0|0|0|1|0|0|4|0|354; (*GB) gi|225454755|ref|XP_002273949.1| (e_value=2e-55) PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera];; (*SWP) sp|Q84T61|HSFA1_ORYSJ (e_value=8e-28) Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1;; (*TAIR) AT5G16820.2 (e_value=4e-21) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc06g072750.2.1 (e_value=5e-133) genomic_reference:SL2.40ch06 gene_region:41255352-41258348 transcript_region:SL2.40ch06:41255352..41258348+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00024972g0010.1 protein AED:0.05 eAED:0.05 QI:186|0.71|0.87|0.87|0.85|1|8|1041|495; (*GB) gi|296082994|emb|CBI22295.3| (e_value=5e-103) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G15510.1 (e_value=2e-89) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:5034120-5036614 FORWARD LENGTH=497;; (*ITAG) Solyc02g066980.1.1 (e_value=8e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31816604-31819658 transcript_region:SL2.40ch02:31816604..31819658- functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *-*- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00024972g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.77|1|0.62|0.66|9|102|440; (*GB) gi|359489023|ref|XP_002279181.2| (e_value=4e-110) PREDICTED: uncharacterized protein LOC100247426 [Vitis vinifera];; (*TAIR) AT5G15510.1 (e_value=2e-94) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:5034120-5036614 FORWARD LENGTH=497;; (*ITAG) Solyc02g067100.2.1 (e_value=3e-147) genomic_reference:SL2.40ch02 gene_region:31907835-31911026 transcript_region:SL2.40ch02:31907835..31911026+ functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *-*- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00024972g0005.1 protein AED:0.19 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|108; (*GB) gi|224080247|ref|XP_002306069.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g066970.1.1 (e_value=5e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:31798223-31798546 transcript_region:SL2.40ch02:31798223..31798546- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00026360g0004.1 protein AED:0.38 eAED:0.38 QI:217|1|1|1|1|1|4|304|123; (*GB) gi|1351357|sp|P48502.1|QCR7_SOLTU (e_value=1e-75) RecName: Full=Cytochrome b-c1 complex subunit 7; AltName: Full=CR14; AltName: Full=Complex III subunit 7; AltName: Full=Complex III subunit VII; AltName: Full=Ubiquinol-cytochrome c reductase complex 14 kDa protein;; (*SWP) sp|P48502|QCR7_SOLTU (e_value=4e-77) Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G25450.1 (e_value=3e-67) | Symbols: | Cytochrome bd ubiquinol oxidase, 14kDa subunit | chr5:8857036-8857849 FORWARD LENGTH=122;; (*ITAG) Solyc08g067020.2.1 (e_value=3e-79) genomic_reference:SL2.40ch08 gene_region:53114215-53119237 transcript_region:SL2.40ch08:53114215..53119237+ go_terms:GO:0006122 functional_description:"Ubiquinol-cytochrome c reductase complex protein (AHRD V1 ***- B6UBZ9_MAIZE); contains Interpro domain(s) IPR003197 Cytochrome bd ubiquinol oxidase, 14 kDa subunit "; GO:0006122 NbS00020721g0003.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|1249; (*GB) gi|15144510|gb|AAK84477.1| (e_value=0.0) putative centromere protein [Solanum lycopersicum];; (*SWP) sp|P0CB23|Y4862_ARATH (e_value=9e-75) Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=2 SV=1;; (*TAIR) AT4G38070.1 (e_value=2e-74) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=1513;; (*ITAG) Solyc11g010620.1.1 (e_value=5e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbS00020721g0005.1 protein AED:0.11 eAED:0.11 QI:1365|0.62|0.66|0.88|0.87|0.77|9|0|578; (*GB) gi|255586028|ref|XP_002533682.1| (e_value=1e-166) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q56X46|MSL2_ARATH (e_value=2e-141) Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1;; (*TAIR) AT5G10490.1 (e_value=1e-142) | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005 REVERSE LENGTH=673;; (*ITAG) Solyc11g010610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3669673-3676723 transcript_region:SL2.40ch11:3669673..3676723- go_terms:GO:0016020 functional_description:"Small conductance mechanosensitive (MscS-family) ion channel (AHRD V1 *-*- Q31G33_THICR); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS "; GO:0016020 NbS00020721g0015.1 protein AED:0.29 eAED:0.29 QI:190|0.85|0.75|1|0.57|0.75|8|113|265; (*GB) gi|225467969|ref|XP_002269096.1| (e_value=3e-100) PREDICTED: 3-hydroxyacyl-CoA dehydratase PASTICCINO 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q7XSZ4|PAS2A_ORYSJ (e_value=1e-96) 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2;; (*TAIR) AT5G10480.3 (e_value=3e-99) | Symbols: PAS2 | Protein-tyrosine phosphatase-like, PTPLA | chr5:3298047-3300048 REVERSE LENGTH=230;; (*ITAG) Solyc04g014370.2.1 (e_value=2e-115) genomic_reference:SL2.40ch04 gene_region:4624987-4631132 transcript_region:SL2.40ch04:4624987..4631132- go_terms:GO:0005515 functional_description:"Tyrosine phosphatase-like (AHRD V1 ***- Q5ZEI6_ORYSJ); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; GO:0005515 NbS00020721g0008.1 protein AED:0.21 eAED:0.22 QI:433|0.8|0.72|1|1|1|11|0|486; (*GB) gi|15144512|gb|AAK84479.1| (e_value=0.0) putative auxin growth promotor protein [Solanum lycopersicum];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-73) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G65470.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:26172432-26174904 FORWARD LENGTH=504;; (*ITAG) Solyc11g010600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3663373-3668581 transcript_region:SL2.40ch11:3663373..3668581+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00020721g0023.1 protein AED:0.26 eAED:0.26 QI:194|0.75|1|1|0.25|0.4|5|897|204; (*GB) gi|267850663|gb|ACY82403.1| (e_value=5e-96) MADS-box protein 20 [Petunia x hybrida];; (*SWP) sp|Q9FUY6|JOIN_SOLLC (e_value=6e-79) MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1;; (*TAIR) AT2G22540.1 (e_value=6e-73) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc11g010570.1.1 (e_value=4e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3640857-3645766 transcript_region:SL2.40ch11:3640857..3645766+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00027370g0005.1 protein AED:0.12 eAED:0.12 QI:481|1|1|1|0.72|0.75|12|1101|604; (*GB) gi|356525465|ref|XP_003531345.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290-like [Glycine max];; (*SWP) sp|C0LGT1|Y5129_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1;; (*TAIR) AT5G10290.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr5:3235462-3238171 REVERSE LENGTH=613;; (*ITAG) Solyc11g008960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3112545-3117930 transcript_region:SL2.40ch11:3112545..3117930- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00004232g0011.1 protein AED:0.09 eAED:0.09 QI:1237|0.93|1|1|0.73|0.5|16|541|802; (*GB) gi|296081481|emb|CBI20004.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q641I1|F135B_XENLA (e_value=5e-46) Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1;; (*TAIR) AT1G09980.1 (e_value=0.0) | Symbols: | Putative serine esterase family protein | chr1:3256541-3260866 REVERSE LENGTH=802;; (*ITAG) Solyc03g113640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57764983-57777016 transcript_region:SL2.40ch03:57764983..57777016- functional_description:"IP15632p (Fragment) (AHRD V1 *--- Q1WWF1_DROME); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00004232g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|463; (*GB) gi|356512825|ref|XP_003525116.1| (e_value=3e-63) PREDICTED: uncharacterized protein LOC100783348 [Glycine max];; (*TAIR) AT1G74860.1 (e_value=7e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123432-28125600 FORWARD LENGTH=400;; (*ITAG) Solyc03g113660.2.1 (e_value=2e-146) genomic_reference:SL2.40ch03 gene_region:57790465-57793218 transcript_region:SL2.40ch03:57790465..57793218+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004232g0006.1 protein AED:0.29 eAED:0.58 QI:305|0|0.5|1|0|0.5|2|0|108 NbC25667968g0003.1 protein AED:0.55 eAED:0.77 QI:3|0.5|0|1|1|1|3|0|137; (*GB) gi|225435446|ref|XP_002285445.1| (e_value=8e-52) PREDICTED: MATE efflux family protein 1 [Vitis vinifera];; (*SWP) sp|Q9SYD6|MATE1_ARATH (e_value=3e-46) MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2;; (*TAIR) AT1G51340.1 (e_value=1e-47) | Symbols: | MATE efflux family protein | chr1:19032034-19034681 FORWARD LENGTH=509;; (*ITAG) Solyc11g065820.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48471797-48476125 transcript_region:SL2.40ch11:48471797..48476125- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00029567g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.55|0.6|1|0.66|0.9|10|187|298; (*GB) gi|255541138|ref|XP_002511633.1| (e_value=7e-117) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5XF59|HIBC4_ARATH (e_value=2e-96) 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1;; (*TAIR) AT3G60510.1 (e_value=1e-97) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr3:22357141-22360003 REVERSE LENGTH=401;; (*ITAG) Solyc01g090700.2.1 (e_value=2e-119) genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00051635g0005.1 protein AED:0.27 eAED:0.29 QI:0|0.36|0.55|0.9|0.63|0.75|20|0|648; (*GB) gi|225425426|ref|XP_002271582.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267642 [Vitis vinifera];; (*SWP) sp|Q5M7C8|HORM1_XENLA (e_value=2e-20) HORMA domain-containing protein 1 OS=Xenopus laevis GN=hormad1 PE=2 SV=1;; (*TAIR) AT1G67370.1 (e_value=6e-168) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00032121g0001.1 protein AED:0.32 eAED:0.32 QI:211|1|1|1|0.5|0.2|5|523|166; (*GB) gi|225440791|ref|XP_002281666.1| (e_value=3e-83) PREDICTED: uncharacterized protein LOC100247671 [Vitis vinifera];; (*TAIR) AT5G06240.1 (e_value=8e-73) | Symbols: emb2735 | embryo defective 2735 | chr5:1888380-1889512 FORWARD LENGTH=162;; (*ITAG) Solyc10g083220.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62406779-62409362 transcript_region:SL2.40ch10:62406779..62409362- functional_description:"Genomic DNA chromosome 5 P1 clone MBL20 (AHRD V1 **-- Q9FFZ3_ARATH)"; NbS00019281g0111.1 protein AED:0.11 eAED:0.11 QI:74|1|1|1|1|1|2|188|146 NbS00019281g0110.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.63|0.81|0.6|0.54|11|314|513 NbS00032617g0006.1 protein AED:0.02 eAED:0.03 QI:0|0.71|0.75|1|0.42|0.5|8|423|206; (*GB) gi|225446402|ref|XP_002274667.1| (e_value=4e-69) PREDICTED: uncharacterized protein LOC100254110 [Vitis vinifera];; (*TAIR) AT1G03760.1 (e_value=5e-38) | Symbols: | Prefoldin chaperone subunit family protein | chr1:941211-943320 REVERSE LENGTH=391;; (*ITAG) Solyc07g053860.2.1 (e_value=9e-76) genomic_reference:SL2.40ch07 gene_region:59592688-59601226 transcript_region:SL2.40ch07:59592688..59601226+ go_terms:GO:0016272 functional_description:"Unconventional prefoldin RPB5 interactor (AHRD V1 *--- RMP_HUMAN); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0016272 NbS00039932g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.85|0.62|1|1|1|8|0|598; (*GB) gi|255551022|ref|XP_002516559.1| (e_value=0.0) protein transporter, putative [Ricinus communis];; (*SWP) sp|Q5SRX1|TM1L2_MOUSE (e_value=3e-13) TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1;; (*TAIR) AT4G32760.1 (e_value=5e-150) | Symbols: | ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=675;; (*ITAG) Solyc08g068370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54667194-54678390 transcript_region:SL2.40ch08:54667194..54678390+ go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00010019g0016.1 protein AED:0.01 eAED:0.01 QI:70|1|1|1|1|1|2|4|359; (*GB) gi|358635024|dbj|BAL22345.1| (e_value=2e-176) oxidoreductase [Ipomoea batatas];; (*SWP) sp|Q9LTH7|ACH12_ARATH (e_value=2e-63) 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1;; (*TAIR) AT1G55290.1 (e_value=4e-161) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:20626208-20627397 REVERSE LENGTH=361;; (*ITAG) Solyc10g026520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:14957874-14959146 transcript_region:SL2.40ch10:14957874..14959146- go_terms:GO:0045431 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00010019g0005.1 protein AED:0.05 eAED:0.05 QI:224|1|0.5|1|0|0|2|0|742; (*GB) gi|255564086|ref|XP_002523041.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FH28|DNJ49_ARATH (e_value=1e-13) Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2;; (*TAIR) AT5G53150.1 (e_value=1e-147) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726;; (*ITAG) Solyc01g044270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38117113-38120227 transcript_region:SL2.40ch01:38117113..38120227+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00010019g0018.1 protein AED:0.06 eAED:0.06 QI:218|0.85|1|1|0.85|0.75|8|294|559; (*GB) gi|225435735|ref|XP_002283551.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250050 [Vitis vinifera];; (*TAIR) AT3G13600.1 (e_value=0.0) | Symbols: | calmodulin-binding family protein | chr3:4445102-4447383 FORWARD LENGTH=605;; (*ITAG) Solyc01g044420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38947224-38949921 transcript_region:SL2.40ch01:38947224..38949921+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6SL12_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00010019g0017.1 protein AED:0.19 eAED:0.19 QI:193|1|1|1|0.5|0.42|7|383|140; (*GB) gi|225427328|ref|XP_002282266.1| (e_value=6e-73) PREDICTED: vesicle transport protein GOT1A [Vitis vinifera];; (*SWP) sp|Q9CR60|GOT1B_MOUSE (e_value=4e-25) Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1;; (*TAIR) AT5G01430.2 (e_value=2e-71) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:176797-178010 REVERSE LENGTH=140;; (*ITAG) Solyc02g069610.2.1 (e_value=3e-77) genomic_reference:SL2.40ch02 gene_region:34031707-34035220 transcript_region:SL2.40ch02:34031707..34035220+ go_terms:GO:0005515,GO:0004871 functional_description:"Protein transport protein GOT1 (AHRD V1 **-- GOT1_YEAST); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515,GO:0004871 NbS00010019g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|152; (*GB) gi|354696022|gb|AER36089.1| (e_value=1e-34) citrus dioxygenase [Citrus limetta];; (*TAIR) AT1G55290.1 (e_value=2e-24) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:20626208-20627397 REVERSE LENGTH=361;; (*ITAG) Solyc10g026520.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:14957874-14959146 transcript_region:SL2.40ch10:14957874..14959146- go_terms:GO:0045431 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00010019g0004.1 protein AED:0.51 eAED:0.56 QI:0|0|0|0.33|1|1|3|0|185; (*GB) gi|296086651|emb|CBI32286.3| (e_value=7e-75) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54X41|SOSSB_DICDI (e_value=5e-17) SOSS complex subunit B homolog OS=Dictyostelium discoideum GN=DDB_G0279223 PE=3 SV=1;; (*TAIR) AT5G63690.1 (e_value=2e-62) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:25492864-25493283 REVERSE LENGTH=139;; (*ITAG) Solyc12g014020.1.1 (e_value=9e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4849891-4850301 transcript_region:SL2.40ch12:4849891..4850301- functional_description:"SOSS complex subunit B1 (AHRD V1 ***- D3PI38_9MAXI); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00007876g0003.1 protein AED:0.44 eAED:0.66 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|16580134|gb|AAK92215.1| (e_value=7e-19) bZIP transcription factor BZI-4 [Nicotiana tabacum];; (*ITAG) Solyc01g100460.2.1 (e_value=5e-21) genomic_reference:SL2.40ch01 gene_region:82243649-82244921 transcript_region:SL2.40ch01:82243649..82244921+ go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **** C0LQL1_9CARY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00007876g0001.1 protein AED:0.32 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|353; (*GB) gi|359480051|ref|XP_002270320.2| (e_value=4e-51) PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera];; (*SWP) sp|Q9FNC7|SUVR2_ARATH (e_value=4e-29) Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2;; (*TAIR) AT5G43990.4 (e_value=3e-30) | Symbols: SUVR2, SDG18 | SET-domain containing protein lysine methyltransferase family protein | chr5:17698523-17701733 FORWARD LENGTH=717;; (*ITAG) Solyc06g008130.2.1 (e_value=3e-138) genomic_reference:SL2.40ch06 gene_region:2012191-2014935 transcript_region:SL2.40ch06:2012191..2014935+ functional_description:"SET domain protein SUVR2 (AHRD V1 ***- D7MN45_ARALY); contains Interpro domain(s) IPR018848 WIYLD domain "; NbS00007876g0004.1 protein AED:0.46 eAED:0.57 QI:0|0|0|1|1|1|3|0|134; (*GB) gi|81074798|gb|ABB55375.1| (e_value=6e-44) unknown [Solanum tuberosum];; (*SWP) sp|Q9FNC9|TO222_ARATH (e_value=6e-33) Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3;; (*TAIR) AT5G43970.1 (e_value=4e-34) | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase of outer membrane 22-V | chr5:17692888-17693187 FORWARD LENGTH=99;; (*ITAG) Solyc06g008120.1.1 (e_value=3e-42) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:1999546-1999869 transcript_region:SL2.40ch06:1999546..1999869+ functional_description:"Mitochondrial import receptor subunit TOM22 (AHRD V1 *-*- B6U2X6_MAIZE); contains Interpro domain(s) IPR017411 Mitochondrial import receptor, TOM9-2 subunit, plant "; NbS00027395g0003.1 protein AED:0.07 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|359472940|ref|XP_003631219.1| (e_value=9e-34) PREDICTED: uncharacterized protein LOC100266460 [Vitis vinifera];; (*TAIR) AT1G68350.1 (e_value=1e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25616516-25617004 FORWARD LENGTH=162;; (*ITAG) Solyc04g007360.1.1 (e_value=2e-46) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:1064255-1064752 transcript_region:SL2.40ch04:1064255..1064752+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027395g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|359472942|ref|XP_002279484.2| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100244117 [Vitis vinifera];; (*TAIR) AT1G25370.1 (e_value=3e-22) | Symbols: | Protein of unknown function (DUF1639) | chr1:8898046-8898934 REVERSE LENGTH=263;; (*ITAG) Solyc04g007340.2.1 (e_value=6e-84) genomic_reference:SL2.40ch04 gene_region:1050565-1052018 transcript_region:SL2.40ch04:1050565..1052018- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00027395g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.4|1|1|5|0|257; (*GB) gi|359472942|ref|XP_002279484.2| (e_value=2e-27) PREDICTED: uncharacterized protein LOC100244117 [Vitis vinifera];; (*TAIR) AT3G18295.1 (e_value=4e-16) | Symbols: | Protein of unknown function (DUF1639) | chr3:6281268-6282000 FORWARD LENGTH=216;; (*ITAG) Solyc04g007350.2.1 (e_value=2e-43) genomic_reference:SL2.40ch04 gene_region:1056015-1057246 transcript_region:SL2.40ch04:1056015..1057246- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00013649g0010.1 protein AED:0.08 eAED:0.10 QI:0|1|0|1|1|1|2|0|527; (*GB) gi|255549776|ref|XP_002515939.1| (e_value=1e-128) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=2e-60) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT1G52080.1 (e_value=1e-81) | Symbols: AR791 | actin binding protein family | chr1:19369788-19371862 FORWARD LENGTH=573;; (*ITAG) Solyc03g121140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63401284-63403745 transcript_region:SL2.40ch03:63401284..63403745+ go_terms:GO:0003779 functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; GO:0003779 NbS00013649g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|1|1|4|483|283; (*GB) gi|356526067|ref|XP_003531641.1| (e_value=2e-134) PREDICTED: GDSL esterase/lipase APG-like [Glycine max];; (*SWP) sp|Q9LU14|APG2_ARATH (e_value=2e-115) GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1;; (*TAIR) AT3G16370.1 (e_value=1e-116) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:5556928-5558351 FORWARD LENGTH=353;; (*ITAG) Solyc03g121180.2.1 (e_value=4e-153) genomic_reference:SL2.40ch03 gene_region:63413348-63415519 transcript_region:SL2.40ch03:63413348..63415519- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g22810 (AHRD V1 ***- GDL78_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00061517g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|255588116|ref|XP_002534506.1| (e_value=2e-18) hypothetical protein RCOM_0377590 [Ricinus communis];; (*TAIR) AT5G40940.1 (e_value=4e-12) | Symbols: FLA20 | putative fasciclin-like arabinogalactan protein 20 | chr5:16406656-16407930 REVERSE LENGTH=424;; (*ITAG) Solyc05g008320.1.1 (e_value=3e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2695060-2696130 transcript_region:SL2.40ch05:2695060..2696130+ functional_description:"Fasciclin-like arabinogalactan protein (AHRD V1 ***- B9N201_POPTR); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00037725g0002.1 protein AED:0.02 eAED:0.02 QI:175|0|0.5|1|0|0.5|2|284|188 NbS00037725g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|155; (*GB) gi|51292007|gb|AAT99735.1| (e_value=8e-99) SKP1 [Nicotiana tabacum];; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=2e-81) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=1e-82) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=2e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00048615g0005.1 protein AED:0.11 eAED:0.12 QI:673|0.66|0.5|1|1|0.75|4|0|645; (*GB) gi|359473103|ref|XP_002282444.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Vitis vinifera];; (*SWP) sp|Q9C9V6|Y1790_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1;; (*TAIR) AT1G67900.3 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:25467737-25469888 FORWARD LENGTH=631;; (*ITAG) Solyc05g013570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6847219-6849746 transcript_region:SL2.40ch05:6847219..6849746- go_terms:GO:0005515,GO:0009416 functional_description:"AT1G67900-like protein (Fragment) (AHRD V1 *--- D6PNV0_9BRAS); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00061107g0002.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|12003392|gb|AAG43553.1|AF211535_1 (e_value=3e-70) Avr9/Cf-9 rapidly elicited protein 194 [Nicotiana tabacum];; (*TAIR) AT5G41810.2 (e_value=5e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 514 Blast hits to 437 proteins in 98 species: Archae - 0; Bacteria - 21; Metazoa - 115; Fungi - 53; Plants - 52; Viruses - 5; Other Eukaryotes - 268 (source: NCBI BLink). | chr5:16738302-16739474 FORWARD LENGTH=279;; (*ITAG) Solyc08g082090.1.1 (e_value=6e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62154056-62154547 transcript_region:SL2.40ch08:62154056..62154547+ functional_description:"Avr9/Cf-9 rapidly elicited protein 194 (AHRD V1 ***- Q9FQZ4_TOBAC)"; NbS00061107g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.42|0.37|0.87|1|1|8|195|359; (*GB) gi|225426008|ref|XP_002273161.1| (e_value=4e-180) PREDICTED: lysine histidine transporter 1 [Vitis vinifera];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=6e-21) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G41800.1 (e_value=9e-172) | Symbols: | Transmembrane amino acid transporter family protein | chr5:16733842-16735888 FORWARD LENGTH=452;; (*ITAG) Solyc08g082080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62143392-62149197 transcript_region:SL2.40ch08:62143392..62149197+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** Q8GZV5_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00004308g0002.1 protein AED:0.03 eAED:0.04 QI:78|0|0.5|1|0|0.5|2|95|106 NbS00049630g0002.1 protein AED:0.48 eAED:0.48 QI:0|0.33|0|0.5|1|1|4|0|82; (*GB) gi|357467567|ref|XP_003604068.1| (e_value=4e-34) Histone chaperone ASF1B [Medicago truncatula];; (*SWP) sp|Q9C9M6|ASF1A_ARATH (e_value=1e-34) Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1;; (*TAIR) AT1G66740.1 (e_value=7e-36) | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone chaperone | chr1:24892586-24893548 FORWARD LENGTH=196;; (*ITAG) Solyc02g091110.2.1 (e_value=4e-35) genomic_reference:SL2.40ch02 gene_region:47097884-47100605 transcript_region:SL2.40ch02:47097884..47100605- go_terms:GO:0042393 functional_description:"Histone chaperone ASF1-like protein (AHRD V1 **** D0NV04_PHYIN); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00022688g0004.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|69 NbS00022688g0015.1 protein AED:0.27 eAED:0.28 QI:0|0.77|0.6|0.9|0.77|0.8|10|0|325; (*GB) gi|255579158|ref|XP_002530426.1| (e_value=1e-170) SEC14 cytosolic factor, putative [Ricinus communis];; (*SWP) sp|Q92503|S14L1_HUMAN (e_value=4e-17) SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2;; (*TAIR) AT1G55840.1 (e_value=1e-148) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:20873891-20876018 FORWARD LENGTH=325;; (*ITAG) Solyc11g012790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5558186-5562111 transcript_region:SL2.40ch11:5558186..5562111- functional_description:"SEC14-like protein 1 (AHRD V1 **-- B6TAH4_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00001640g0012.1 protein AED:0.18 eAED:0.18 QI:202|1|0.66|1|1|1|3|0|232; (*GB) gi|350539299|ref|NP_001233874.1| (e_value=3e-97) protein DCL, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q42463|DCL_SOLLC (e_value=9e-99) Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1;; (*TAIR) AT1G45230.1 (e_value=1e-72) | Symbols: | Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219;; (*ITAG) Solyc04g078850.2.1 (e_value=6e-100) genomic_reference:SL2.40ch04 gene_region:61103300-61107755 transcript_region:SL2.40ch04:61103300..61107755- functional_description:"DNA-directed RNA polymerase (Fragment) (AHRD V1 *-*- Q5D868_SPIOL)"; NbS00001640g0018.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.4|0.75|0.6|5|0|288; (*GB) gi|302142309|emb|CBI19512.3| (e_value=5e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M7Q4|AI5L5_ARATH (e_value=3e-43) ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1;; (*TAIR) AT1G45249.1 (e_value=2e-44) | Symbols: ABF2, AREB1, ATAREB1 | abscisic acid responsive elements-binding factor 2 | chr1:17165420-17167415 REVERSE LENGTH=416;; (*ITAG) Solyc04g078840.2.1 (e_value=1e-62) genomic_reference:SL2.40ch04 gene_region:61094101-61097408 transcript_region:SL2.40ch04:61094101..61097408- go_terms:GO:0003700,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700,GO:0010843 NbS00001640g0017.1 protein AED:0.64 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|135 NbS00001640g0019.1 protein AED:0.15 eAED:0.15 QI:143|0.75|0.66|1|0.75|0.55|9|272|817; (*GB) gi|225458631|ref|XP_002284804.1| (e_value=0.0) PREDICTED: THO complex subunit 5 homolog [Vitis vinifera];; (*SWP) sp|Q6NY52|THOC5_DANRE (e_value=3e-24) THO complex subunit 5 homolog OS=Danio rerio GN=thoc5 PE=2 SV=1;; (*TAIR) AT5G42920.2 (e_value=0.0) | Symbols: THO5, AtTHO5 | THO complex, subunit 5 | chr5:17206310-17209522 REVERSE LENGTH=819;; (*ITAG) Solyc04g078830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61086208-61093163 transcript_region:SL2.40ch04:61086208..61093163+ functional_description:"THO complex subunit 5 homolog (AHRD V1 *-*- THOC5_DANRE); contains Interpro domain(s) IPR019163 THO complex, subunit 5 "; NbS00001640g0015.1 protein AED:0.16 eAED:0.16 QI:133|0.8|0.83|1|1|1|6|295|260; (*GB) gi|147790114|emb|CAN65460.1| (e_value=3e-127) hypothetical protein VITISV_002196 [Vitis vinifera];; (*SWP) sp|Q9C9X3|ANXD5_ARATH (e_value=2e-74) Annexin D5 OS=Arabidopsis thaliana GN=ANN5 PE=2 SV=2;; (*TAIR) AT1G68090.1 (e_value=1e-75) | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442-25520774 REVERSE LENGTH=316;; (*ITAG) Solyc04g078820.2.1 (e_value=1e-142) genomic_reference:SL2.40ch04 gene_region:61081296-61085434 transcript_region:SL2.40ch04:61081296..61085434+ go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00028115g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0.91|1|0.81|0.91|12|0|430; (*GB) gi|1097877|prf||2114378A (e_value=0.0) aminolevulinate dehydratase;; (*SWP) sp|Q9SFH9|HEM2_ARATH (e_value=0.0) Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1;; (*TAIR) AT1G69740.2 (e_value=0.0) | Symbols: HEMB1 | Aldolase superfamily protein | chr1:26232197-26234713 FORWARD LENGTH=430;; (*ITAG) Solyc08g069030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55322764-55332861 transcript_region:SL2.40ch08:55322764..55332861+ go_terms:GO:0042802,GO:0004655 functional_description:"Delta-aminolevulinic acid dehydratase (AHRD V1 ***- B9RJ27_RICCO); contains Interpro domain(s) IPR001731 Tetrapyrrole biosynthesis, porphobilinogen synthase "; GO:0042802,GO:0004655 NbS00024467g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|80|225; (*GB) gi|365222876|gb|AEW69790.1| (e_value=9e-75) Hop-interacting protein THI026 [Solanum lycopersicum];; (*SWP) sp|Q9SS31|CML36_ARATH (e_value=3e-41) Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1;; (*TAIR) AT3G10190.1 (e_value=2e-42) | Symbols: | Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209;; (*ITAG) Solyc04g018110.1.1 (e_value=1e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:9603164-9603892 transcript_region:SL2.40ch04:9603164..9603892+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein 1 (AHRD V1 *-*- B4FRR5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00024467g0002.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|0|0|2|524|753; (*GB) gi|359481896|ref|XP_002274379.2| (e_value=0.0) PREDICTED: putative COX1/OXI3 intron 2 protein-like [Vitis vinifera];; (*SWP) sp|P03876|AI2M_YEAST (e_value=5e-14) Putative COX1/OXI3 intron 2 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=aI2 PE=1 SV=2;; (*TAIR) AT5G04050.1 (e_value=0.0) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase) | chr5:1096092-1097894 FORWARD LENGTH=600;; (*ITAG) Solyc03g033520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9344333-9346934 transcript_region:SL2.40ch03:9344333..9346934+ functional_description:"Maturase (Fragment) (AHRD V1 *-*- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00031014g0002.1 protein AED:0.03 eAED:0.03 QI:174|1|1|1|0.14|0.12|8|308|251; (*GB) gi|225445204|ref|XP_002284308.1| (e_value=2e-66) PREDICTED: probable protein ABIL5 [Vitis vinifera];; (*SWP) sp|Q5JMF2|ABIL5_ORYSJ (e_value=3e-30) Probable protein ABIL5 OS=Oryza sativa subsp. japonica GN=Os01g0760900 PE=2 SV=1;; (*TAIR) AT3G49290.2 (e_value=1e-23) | Symbols: ABIL2 | ABL interactor-like protein 2 | chr3:18273407-18275221 FORWARD LENGTH=312;; (*ITAG) Solyc12g007160.1.1 (e_value=1e-156) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1591341-1593804 transcript_region:SL2.40ch12:1591341..1593804- functional_description:"Protein ABIL1 (AHRD V1 *--- B6TCZ2_MAIZE)"; NbS00031014g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|1|0|0.14|7|0|404; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=9e-148) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=6e-125) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT3G24620.1 (e_value=5e-126) | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotide exchange factor 8 | chr3:8980695-8982793 REVERSE LENGTH=523;; (*ITAG) Solyc12g007150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1587456-1591011 transcript_region:SL2.40ch12:1587456..1591011+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00004091g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|57013924|ref|YP_173397.1| (e_value=4e-23) hypothetical protein NitaMp051 [Nicotiana tabacum]; NbS00016250g0008.1 protein AED:0.18 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|225424108|ref|XP_002283507.1| (e_value=2e-22) PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Vitis vinifera];; (*ITAG) Solyc04g007500.1.1 (e_value=2e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1170448-1170939 transcript_region:SL2.40ch04:1170448..1170939- go_terms:GO:0005515,GO:0004842 functional_description:"RING finger protein (AHRD V1 ***- Q22V07_TETTH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00016250g0016.1 protein AED:0.30 eAED:0.31 QI:0|0.57|0.62|1|0.42|0.5|8|270|817; (*GB) gi|255569399|ref|XP_002525667.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8IWB9|TEX2_HUMAN (e_value=1e-15) Testis-expressed sequence 2 protein OS=Homo sapiens GN=TEX2 PE=1 SV=2;; (*TAIR) AT1G17820.1 (e_value=0.0) | Symbols: | Putative integral membrane protein conserved region (DUF2404) | chr1:6131751-6135115 REVERSE LENGTH=803;; (*ITAG) Solyc06g072110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40828251-40836356 transcript_region:SL2.40ch06:40828251..40836356+ go_terms:GO:0035091 functional_description:"Tex2 protein (Fragment) (AHRD V1 *--- Q5XI82_RAT); contains Interpro domain(s) IPR019411 Protein of unknown function DUF2404, transmembrane "; GO:0035091 NbS00016250g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.2|1|1|1|5|317|279; (*GB) gi|78191420|gb|ABB29931.1| (e_value=2e-131) P40-like protein [Solanum tuberosum];; (*SWP) sp|O80377|RSSA_DAUCA (e_value=2e-124) 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1;; (*TAIR) AT3G04770.2 (e_value=9e-120) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280;; (*ITAG) Solyc06g072120.2.1 (e_value=4e-143) genomic_reference:SL2.40ch06 gene_region:40837031-40840492 transcript_region:SL2.40ch06:40837031..40840492- go_terms:GO:0043236 functional_description:"40S ribosomal protein SA (AHRD V1 ***- B4G194_MAIZE); contains Interpro domain(s) IPR005707 Ribosomal protein S2, eukaryotic/archaeal "; GO:0043236 NbS00016250g0015.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.14|1|0.83|0.85|7|0|316; (*GB) gi|78191420|gb|ABB29931.1| (e_value=5e-154) P40-like protein [Solanum tuberosum];; (*SWP) sp|O80377|RSSA_DAUCA (e_value=1e-140) 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1;; (*TAIR) AT3G04770.2 (e_value=7e-138) | Symbols: RPSAb | 40s ribosomal protein SA B | chr3:1309544-1310846 REVERSE LENGTH=280;; (*ITAG) Solyc06g072120.2.1 (e_value=3e-157) genomic_reference:SL2.40ch06 gene_region:40837031-40840492 transcript_region:SL2.40ch06:40837031..40840492- go_terms:GO:0043236 functional_description:"40S ribosomal protein SA (AHRD V1 ***- B4G194_MAIZE); contains Interpro domain(s) IPR005707 Ribosomal protein S2, eukaryotic/archaeal "; GO:0043236 NbS00016250g0019.1 protein AED:0.39 eAED:0.54 QI:0|1|0|1|1|1|2|0|63 NbS00016250g0006.1 protein AED:0.77 eAED:0.94 QI:0|0|0|0.4|1|1|5|0|73 NbS00010712g0010.1 protein AED:0.20 eAED:0.22 QI:0|0.62|0.55|1|0.5|0.55|9|454|533; (*GB) gi|359486225|ref|XP_003633416.1| (e_value=2e-174) PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q66GI4|PP179_ARATH (e_value=3e-120) Pentatricopeptide repeat-containing protein At2g32230, mitochondrial OS=Arabidopsis thaliana GN=At2g32230 PE=2 SV=1;; (*TAIR) AT2G16650.1 (e_value=7e-161) | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:7215937-7218061 REVERSE LENGTH=528;; (*ITAG) Solyc06g074400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42410551-42418219 transcript_region:SL2.40ch06:42410551..42418219- go_terms:GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial (AHRD V1 **-- PP179_ARATH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00010712g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.25|0.75|0.66|0.25|4|0|183; (*GB) gi|359479527|ref|XP_003632284.1| (e_value=4e-78) PREDICTED: fatty acyl-CoA reductase 3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=1e-60) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=8e-62) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc06g074390.2.1 (e_value=4e-94) genomic_reference:SL2.40ch06 gene_region:42405732-42410059 transcript_region:SL2.40ch06:42405732..42410059+ go_terms:GO:0016627,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016627,GO:0080019 NbS00016075g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.9|0.72|1|0.9|0.90|11|0|394; (*GB) gi|3121837|sp|O04940.1|CDS1_SOLTU (e_value=0.0) RecName: Full=Phosphatidate cytidylyltransferase; AltName: Full=CDP-DAG synthase; AltName: Full=CDP-DG synthase; AltName: Full=CDP-diacylglycerol synthase; Short=CDS; AltName: Full=CDP-diglyceride pyrophosphorylase; AltName: Full=CDP-diglyceride synthase; AltName: Full=CTP:phosphatidate cytidylyltransferase;; (*SWP) sp|O04940|CDS1_SOLTU (e_value=0.0) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G22340.1 (e_value=0.0) | Symbols: CDS2 | cytidinediphosphate diacylglycerol synthase 2 | chr4:11800150-11802549 REVERSE LENGTH=423;; (*ITAG) Solyc03g005410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:272416-288140 transcript_region:SL2.40ch03:272416..288140- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RXC8_RICCO); contains Interpro domain(s) IPR016720 Phosphatidate cytidylyltransferase, eukaryota "; GO:0004605 NbS00016075g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.55|0.4|0.9|1|1|10|0|281; (*GB) gi|225432906|ref|XP_002284181.1| (e_value=4e-114) PREDICTED: magnesium transporter MRS2-I isoform 1 [Vitis vinifera];; (*SWP) sp|B8AJT9|MRS2I_ORYSI (e_value=7e-106) Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1;; (*TAIR) AT5G64560.1 (e_value=1e-104) | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transporter 9 | chr5:25807025-25809395 REVERSE LENGTH=394;; (*ITAG) Solyc03g005390.2.1 (e_value=9e-138) genomic_reference:SL2.40ch03 gene_region:224656-235140 transcript_region:SL2.40ch03:224656..235140+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-I (AHRD V1 **** MRS2I_ORYSJ); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00052593g0005.1 protein AED:0.36 eAED:0.36 QI:0|1|0.75|1|1|1|4|0|217; (*GB) gi|225425579|ref|XP_002266223.1| (e_value=2e-114) PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera];; (*SWP) sp|O58321|PCP_PYRHO (e_value=3e-15) Pyrrolidone-carboxylate peptidase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pcp PE=1 SV=1;; (*TAIR) AT1G23440.1 (e_value=2e-114) | Symbols: | Peptidase C15, pyroglutamyl peptidase I-like | chr1:8321940-8324019 FORWARD LENGTH=217;; (*ITAG) Solyc05g005200.2.1 (e_value=9e-132) genomic_reference:SL2.40ch05 gene_region:173412-177352 transcript_region:SL2.40ch05:173412..177352- go_terms:GO:0008233 functional_description:"Pyrrolidone-carboxylate peptidase (AHRD V1 **** B6SP89_MAIZE); contains Interpro domain(s) IPR000816 Peptidase C15, pyroglutamyl peptidase I "; GO:0008233 NbS00007931g0001.1 protein AED:0.46 eAED:0.52 QI:0|1|0.75|1|0|0|4|584|350; (*GB) gi|298204712|emb|CBI25210.3| (e_value=2e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=5e-36) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1;; (*TAIR) AT1G74190.1 (e_value=2e-58) | Symbols: AtRLP15, RLP15 | receptor like protein 15 | chr1:27902590-27906158 REVERSE LENGTH=965;; (*ITAG) Solyc04g014400.2.1 (e_value=5e-65) genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00018722g0004.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|255583978|ref|XP_002532735.1| (e_value=2e-36) hypothetical protein RCOM_1749890 [Ricinus communis];; (*TAIR) AT3G25130.1 (e_value=9e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc09g059550.1.1 (e_value=2e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50445438-50446517 transcript_region:SL2.40ch09:50445438..50446517+ functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00018722g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|224065407|ref|XP_002301802.1| (e_value=8e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25130.1 (e_value=5e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc09g059550.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50445438-50446517 transcript_region:SL2.40ch09:50445438..50446517+ functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00051293g0004.1 protein AED:0.18 eAED:0.18 QI:140|1|0.33|1|0|0|3|0|56; (*GB) gi|170792414|emb|CAP08387.1| (e_value=4e-16) Ppx-GppA phosphatase protein (exopolyphosphatase) [Capsicum annuum];; (*ITAG) Solyc01g100260.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:82089176-82095527 transcript_region:SL2.40ch01:82089176..82095527+ functional_description:"Guanosine-5&apos-triphosphate 3&apos-diphosphate pyrophosphatase (AHRD V1 **-- D8MKR7_9ENTR); contains Interpro domain(s) IPR003695 Ppx/GppA phosphatase "; NbS00051293g0005.1 protein AED:0.15 eAED:0.20 QI:0|0|0|1|0|0|2|0|119; (*ITAG) Solyc04g053070.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00006730g0006.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|273; (*GB) gi|225435209|ref|XP_002284873.1| (e_value=2e-117) PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis vinifera];; (*SWP) sp|Q9M1E8|SEN21_ARATH (e_value=6e-94) tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1;; (*TAIR) AT3G45590.2 (e_value=4e-95) | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | chr3:16733062-16733775 FORWARD LENGTH=237;; (*ITAG) Solyc06g075350.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43164928-43165659 transcript_region:SL2.40ch06:43164928..43165659+ go_terms:GO:0004518 functional_description:"tRNA-splicing endonuclease (AHRD V1 *-*- ENDA_SULSO); contains Interpro domain(s) IPR006677 tRNA intron endonuclease, catalytic domain-like "; GO:0004518 NbS00006730g0008.1 protein AED:0.08 eAED:0.09 QI:0|0.66|0.7|1|0.22|0.3|10|81|1084; (*GB) gi|224142425|ref|XP_002324558.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64793|Y1675_ARATH (e_value=3e-108) G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3;; (*TAIR) AT3G16030.1 (e_value=2e-108) | Symbols: CES101 | lectin protein kinase family protein | chr3:5439609-5442802 FORWARD LENGTH=850;; (*ITAG) Solyc07g005110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:128660-133395 transcript_region:SL2.40ch07:128660..133395+ go_terms:GO:0006032,GO:0005975,GO:0006468 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 *-*- Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006032,GO:0005975,GO:0006468 NbS00006730g0005.1 protein AED:0.19 eAED:0.46 QI:0|0|0|0.5|1|1|4|0|157; (*GB) gi|113205229|gb|AAT39315.2| (e_value=1e-40) Senescence-associated protein, putative [Solanum demissum];; (*TAIR) AT3G45600.1 (e_value=7e-34) | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735854 REVERSE LENGTH=285;; (*ITAG) Solyc11g072480.1.1 (e_value=3e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52752185-52755602 transcript_region:SL2.40ch11:52752185..52755602- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B6T9C5_MAIZE); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbC25341561g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|64; (*ITAG) Solyc01g108380.1.1 (e_value=8e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87461709-87462033 transcript_region:SL2.40ch01:87461709..87462033- go_terms:GO:0009611 functional_description:"Protease inhibitor protein (AHRD V1 -**- B3FNP9_HEVBR); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00056289g0015.1 protein AED:0.18 eAED:0.19 QI:1657|0.63|0.69|1|0.63|0.60|23|351|1241; (*GB) gi|359485856|ref|XP_002267033.2| (e_value=8e-128) PREDICTED: uncharacterized protein LOC100244248 [Vitis vinifera];; (*TAIR) AT2G04235.1 (e_value=1e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 713 Blast hits to 345 proteins in 122 species: Archae - 2; Bacteria - 262; Metazoa - 138; Fungi - 55; Plants - 39; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). | chr2:1449414-1455018 FORWARD LENGTH=1253;; (*ITAG) Solyc07g045170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55586742-55604373 transcript_region:SL2.40ch07:55586742..55604373+ functional_description:"184 (Fragment) (AHRD V1 *-*- O80379_DAUCA)"; NbS00008178g0018.1 protein AED:0.03 eAED:0.03 QI:116|1|1|1|1|1|2|157|148; (*GB) gi|27529852|dbj|BAC53941.1| (e_value=4e-56) H2A histone [Nicotiana tabacum];; (*SWP) sp|P25469|H2A1_SOLLC (e_value=1e-54) Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G59870.1 (e_value=3e-50) | Symbols: HTA6 | histone H2A 6 | chr5:24115605-24116144 REVERSE LENGTH=150;; (*ITAG) Solyc01g099410.2.1 (e_value=7e-56) genomic_reference:SL2.40ch01 gene_region:81438054-81439018 transcript_region:SL2.40ch01:81438054..81439018- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- Q8H0G7_TOBAC); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00008178g0008.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|357441721|ref|XP_003591138.1| (e_value=8e-28) hypothetical protein MTR_1g083240 [Medicago truncatula];; (*ITAG) Solyc01g099450.2.1 (e_value=4e-62) genomic_reference:SL2.40ch01 gene_region:81458753-81459380 transcript_region:SL2.40ch01:81458753..81459380+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008178g0019.1 protein AED:0.17 eAED:0.17 QI:351|1|1|1|0.73|0.75|16|287|878; (*GB) gi|359487624|ref|XP_002279606.2| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Vitis vinifera];; (*SWP) sp|Q9FT69|RQSIM_ARATH (e_value=1e-130) ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana GN=RECQSIM PE=2 SV=1;; (*TAIR) AT5G27680.1 (e_value=1e-131) | Symbols: RECQSIM | RECQ helicase SIM | chr5:9794244-9798637 REVERSE LENGTH=858;; (*ITAG) Solyc01g099460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:81463393-81472730 transcript_region:SL2.40ch01:81463393..81472730+ go_terms:GO:0006310,GO:0008026,GO:0005524 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-*- D8G648_9CYAN); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0006310,GO:0008026,GO:0005524 NbS00008178g0023.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|0.5|2|0|207; (*GB) gi|225450815|ref|XP_002283982.1| (e_value=4e-114) PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q640T2|WIPI3_XENTR (e_value=1e-33) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G62770.3 (e_value=2e-102) | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23219091-23221110 REVERSE LENGTH=396;; (*ITAG) Solyc01g099400.2.1 (e_value=7e-105) genomic_reference:SL2.40ch01 gene_region:81429273-81435009 transcript_region:SL2.40ch01:81429273..81435009+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0032266 NbS00057779g0005.1 protein AED:0.12 eAED:0.12 QI:141|0.77|0.9|1|0.88|0.9|10|224|246; (*GB) gi|356516792|ref|XP_003527077.1| (e_value=6e-83) PREDICTED: protein SET-like isoform 1 [Glycine max];; (*SWP) sp|Q01105|SET_HUMAN (e_value=6e-40) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G18800.1 (e_value=2e-78) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc03g116170.2.1 (e_value=5e-90) genomic_reference:SL2.40ch03 gene_region:59709189-59714932 transcript_region:SL2.40ch03:59709189..59714932+ go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00002968g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.33|0.5|4|0|181; (*GB) gi|76573331|gb|ABA46770.1| (e_value=5e-112) small GTP-binding protein Sar1BNt-like protein [Solanum tuberosum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=4e-111) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=3e-112) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc01g100350.2.1 (e_value=1e-114) genomic_reference:SL2.40ch01 gene_region:82173471-82176296 transcript_region:SL2.40ch01:82173471..82176296- go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00002968g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.33|1|0|0|3|354|70 NbS00030119g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|454|583; (*GB) gi|359488761|ref|XP_003633815.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At1g27190-like [Vitis vinifera];; (*SWP) sp|O04567|Y1719_ARATH (e_value=0.0) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT3G28450.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605;; (*ITAG) Solyc02g087460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44476077-44477882 transcript_region:SL2.40ch02:44476077..44477882+ go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00025576g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|225447252|ref|XP_002278962.1| (e_value=6e-78) PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera];; (*TAIR) AT2G20830.1 (e_value=4e-49) | Symbols: | transferases;folic acid binding | chr2:8968370-8969798 REVERSE LENGTH=297;; (*ITAG) Solyc07g054430.2.1 (e_value=2e-101) genomic_reference:SL2.40ch07 gene_region:60069440-60072054 transcript_region:SL2.40ch07:60069440..60072054+ go_terms:GO:0030412,GO:0030409 functional_description:"Glutamate formiminotransferase (AHRD V1 **** B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0030412,GO:0030409 NbS00007222g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0.5|2|0|91; (*GB) gi|388504058|gb|AFK40095.1| (e_value=8e-26) unknown [Medicago truncatula];; (*TAIR) AT4G35220.1 (e_value=1e-25) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc10g049970.1.1 (e_value=4e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:42766896-42768518 transcript_region:SL2.40ch10:42766896..42768518+ go_terms:GO:0004061,GO:0009975 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061,GO:0009975 NbS00026173g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|188; (*GB) gi|5123949|emb|CAB45507.1| (e_value=6e-46) endoxyloglucan transferase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9SV61|XTH1_ARATH (e_value=2e-47) Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=2;; (*TAIR) AT4G13080.1 (e_value=1e-48) | Symbols: XTH1 | xyloglucan endotransglucosylase/hydrolase 1 | chr4:7626612-7628367 REVERSE LENGTH=292;; (*ITAG) Solyc06g083400.1.1 (e_value=7e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45096186-45098342 transcript_region:SL2.40ch06:45096186..45098342- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q2MK81_9ROSA); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16 "; GO:0016798 NbS00048994g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|0|0.33|3|142|96; (*TAIR) AT1G69480.1 (e_value=5e-13) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr1:26114187-26117479 REVERSE LENGTH=777;; (*ITAG) Solyc08g068240.1.1 (e_value=8e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54553451-54557598 transcript_region:SL2.40ch08:54553451..54557598+ go_terms:GO:0016021 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0016021 NbS00053884g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|6|0|227; (*GB) gi|363807536|ref|NP_001242657.1| (e_value=2e-79) uncharacterized protein LOC100814016 [Glycine max];; (*SWP) sp|Q8W485|Y5010_ARATH (e_value=1e-71) Uncharacterized protein At5g50100, mitochondrial OS=Arabidopsis thaliana GN=At5g50100 PE=1 SV=1;; (*TAIR) AT5G50100.1 (e_value=9e-73) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr5:20371916-20373172 FORWARD LENGTH=214;; (*ITAG) Solyc03g113990.2.1 (e_value=1e-93) genomic_reference:SL2.40ch03 gene_region:58094446-58096957 transcript_region:SL2.40ch03:58094446..58096957- functional_description:"Uncharacterized conserved protein (AHRD V1 **-- Q0IAV1_SYNS3); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00053884g0008.1 protein AED:0.07 eAED:0.07 QI:33|1|0.5|1|1|1|2|0|123; (*ITAG) Solyc03g113980.2.1 (e_value=9e-21) genomic_reference:SL2.40ch03 gene_region:58090161-58093457 transcript_region:SL2.40ch03:58090161..58093457+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** Q9FKL6_ARATH); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00053884g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0.5|0.75|0.33|0.5|4|800|358; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=6e-47) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.1 (e_value=9e-42) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113980.2.1 (e_value=4e-88) genomic_reference:SL2.40ch03 gene_region:58090161-58093457 transcript_region:SL2.40ch03:58090161..58093457+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** Q9FKL6_ARATH); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00032729g0010.1 protein AED:0.00 eAED:0.00 QI:175|1|0.5|1|0|0|2|0|323; (*GB) gi|225459336|ref|XP_002284185.1| (e_value=1e-92) PREDICTED: uncharacterized protein LOC100264413 [Vitis vinifera];; (*TAIR) AT1G78110.1 (e_value=2e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). | chr1:29391879-29392907 FORWARD LENGTH=342;; (*ITAG) Solyc04g072940.2.1 (e_value=2e-139) genomic_reference:SL2.40ch04 gene_region:57535270-57536930 transcript_region:SL2.40ch04:57535270..57536930+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032729g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0|1|1|1|5|0|390; (*GB) gi|302141943|emb|CBI19146.3| (e_value=8e-65) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MAH1|TTL1_ARATH (e_value=6e-38) TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1;; (*TAIR) AT5G65160.1 (e_value=8e-48) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g073940.2.1 (e_value=1e-94) genomic_reference:SL2.40ch04 gene_region:57543061-57545105 transcript_region:SL2.40ch04:57543061..57545105- go_terms:GO:0030544,GO:0051082 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MT84_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544,GO:0051082 NbS00032729g0012.1 protein AED:0.32 eAED:0.42 QI:0|0|0|1|1|1|2|0|105; (*GB) gi|114557|sp|P26530.1|ATPB_NICRU (e_value=1e-20) RecName: Full=ATP synthase subunit beta, chloroplastic; AltName: Full=ATP synthase F1 sector subunit beta; AltName: Full=F-ATPase subunit beta;; (*SWP) sp|P26530|ATPB_NICRU (e_value=4e-22) ATP synthase subunit beta, chloroplastic OS=Nicotiana rustica GN=atpB PE=3 SV=1;; (*ITAG) ATCG00480.1 (e_value=6e-17) | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=498;; (*ITAG) Solyc01g007320.2.1 (e_value=5e-22) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00021941g0002.1 protein AED:0.33 eAED:0.33 QI:241|0|0.5|1|0|0|2|0|119; (*GB) gi|359492090|ref|XP_002284737.2| (e_value=1e-24) PREDICTED: 3-hydroxybenzoate 6-hydroxylase 1-like [Vitis vinifera];; (*TAIR) AT5G05320.1 (e_value=6e-25) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:1575093-1576679 REVERSE LENGTH=406;; (*ITAG) Solyc08g063130.2.1 (e_value=4e-32) genomic_reference:SL2.40ch08 gene_region:49980107-49983988 transcript_region:SL2.40ch08:49980107..49983988+ go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00010121g0003.1 protein AED:0.18 eAED:0.30 QI:0|0|0|0.5|0|0.25|4|0|328; (*GB) gi|225464142|ref|XP_002265566.1| (e_value=4e-122) PREDICTED: protein YIPF5 [Vitis vinifera];; (*SWP) sp|Q7SXS2|YIPF5_XENLA (e_value=1e-26) Protein YIPF5 OS=Xenopus laevis GN=yipf5 PE=2 SV=1;; (*TAIR) AT2G36300.1 (e_value=5e-80) | Symbols: | Integral membrane Yip1 family protein | chr2:15213362-15214129 REVERSE LENGTH=255;; (*ITAG) Solyc11g007080.1.1 (e_value=3e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1546571-1548739 transcript_region:SL2.40ch11:1546571..1548739- go_terms:GO:0016020 functional_description:"YIPF5 (AHRD V1 **-- C0H9W5_SALSA); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0016020 NbS00022012g0006.1 protein AED:0.11 eAED:0.42 QI:3|0|0|0.66|0.5|0.66|3|0|285; (*GB) gi|297736346|emb|CBI25069.3| (e_value=2e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=7e-20) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=6e-21) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc01g106460.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:86111229-86112985 transcript_region:SL2.40ch01:86111229..86112985+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00043692g0001.1 protein AED:0.19 eAED:0.59 QI:0|0|0|1|0|0|2|0|68 NbS00013221g0007.1 protein AED:0.17 eAED:0.17 QI:0|1|0.8|1|1|1|5|0|189; (*GB) gi|5932418|gb|AAD56950.1|AF184885_1 (e_value=1e-137) LIM domain protein PLIM1 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-99) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=2e-109) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc11g044740.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36050109-36051260 transcript_region:SL2.40ch11:36050109..36051260+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00013221g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.33|0.66|0.2|0.33|6|194|208; (*ITAG) Solyc03g044840.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00005750g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|199; (*GB) gi|164454785|dbj|BAF96939.1| (e_value=3e-111) flavonol synthase [Nicotiana tabacum];; (*SWP) sp|Q07512|FLS_PETHY (e_value=3e-110) Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1;; (*TAIR) AT5G08640.2 (e_value=1e-74) | Symbols: FLS1 | flavonol synthase 1 | chr5:2804009-2805175 FORWARD LENGTH=336;; (*ITAG) Solyc11g013110.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5961440-5965680 transcript_region:SL2.40ch11:5961440..5965680+ go_terms:GO:0045431 functional_description:"Anthocyanidin synthase (AHRD V1 **** B2M0X8_GINBI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00005750g0006.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|240; (*ITAG) Solyc00g027140.1.1 (e_value=7e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12390165-12393585 transcript_region:SL2.40ch00:12390165..12393585- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00005750g0008.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.25|1|1|4|0|138 NbS00005750g0010.1 protein AED:0.23 eAED:0.23 QI:370|1|1|1|0.33|0.57|7|372|455; (*GB) gi|302141857|emb|CBI19060.3| (e_value=5e-159) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G41705.2 (e_value=5e-137) | Symbols: | camphor resistance CrcB family protein | chr2:17398083-17399910 FORWARD LENGTH=461;; (*ITAG) Solyc11g013120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5977807-5980510 transcript_region:SL2.40ch11:5977807..5980510- go_terms:GO:0016020 functional_description:"Protein crcB homolog (AHRD V1 *-*- A4BPZ9_9GAMM); contains Interpro domain(s) IPR003691 Camphor resistance CrcB protein "; GO:0016020 NbS00005750g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|0|1|0|87; (*GB) gi|53749448|gb|AAU90304.1| (e_value=6e-19) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc04g071390.1.1 (e_value=4e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00050655g0001.1 protein AED:0.40 eAED:0.40 QI:0|0.85|0.62|1|1|1|8|0|464; (*GB) gi|356572282|ref|XP_003554298.1| (e_value=3e-104) PREDICTED: uncharacterized protein LOC100810560 [Glycine max];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-33) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=9e-79) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc05g055940.2.1 (e_value=5e-156) genomic_reference:SL2.40ch05 gene_region:64521576-64525231 transcript_region:SL2.40ch05:64521576..64525231+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00000136g0011.1 protein AED:0.10 eAED:0.10 QI:271|1|1|1|0.66|0.5|4|558|172; (*GB) gi|255588186|ref|XP_002534527.1| (e_value=2e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G10522.2 (e_value=2e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3470009-3471291 FORWARD LENGTH=179;; (*ITAG) Solyc05g006110.2.1 (e_value=2e-76) genomic_reference:SL2.40ch05 gene_region:826982-828940 transcript_region:SL2.40ch05:826982..828940- functional_description:"Unknown Protein (AHRD V1)"; NbS00000136g0010.1 protein AED:0.21 eAED:0.20 QI:0|1|0.86|1|0.85|0.8|15|177|599; (*GB) gi|30681747|ref|NP_172522.2| (e_value=0.0) DNA polymerase lambda subunit [Arabidopsis thaliana];; (*SWP) sp|Q5RKI3|DPOLL_RAT (e_value=2e-59) DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1;; (*TAIR) AT1G10520.1 (e_value=0.0) | Symbols: | DNA polymerase lambda (POLL) | chr1:3465964-3469248 FORWARD LENGTH=529;; (*ITAG) Solyc05g006120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:829783-837498 transcript_region:SL2.40ch05:829783..837498- go_terms:GO:0003887 functional_description:"Polymerase (DNA directed) mu (AHRD V1 **** Q66HH0_RAT); contains Interpro domain(s) IPR002054 DNA-directed DNA polymerase, family X "; GO:0003887 NbS00000136g0017.1 protein AED:0.05 eAED:0.05 QI:159|0.85|0.62|1|0.71|1|8|128|533; (*GB) gi|225424754|ref|XP_002266408.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 22 [Vitis vinifera];; (*SWP) sp|Q6H601|RH22_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2;; (*TAIR) AT1G59990.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:22090369-22092885 REVERSE LENGTH=581;; (*ITAG) Solyc05g006130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:839061-843802 transcript_region:SL2.40ch05:839061..843802+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** D3BPQ9_POLPA); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00000136g0014.1 protein AED:0.17 eAED:0.17 QI:293|1|0.9|1|0.88|0.8|10|374|368; (*GB) gi|296086505|emb|CBI32094.3| (e_value=7e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|P64956|Y2253_MYCBO (e_value=4e-19) Uncharacterized protein Mb2253c OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1;; (*TAIR) AT1G24090.1 (e_value=3e-106) | Symbols: | RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353;; (*ITAG) Solyc05g006090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:818986-824063 transcript_region:SL2.40ch05:818986..824063+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- A4TBN9_MYCGI); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00000136g0018.1 protein AED:0.22 eAED:0.22 QI:112|1|0.66|1|0.5|0.66|3|317|236; (*GB) gi|359473412|ref|XP_002266599.2| (e_value=8e-74) PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera];; (*SWP) sp|P40761|YUXK_BACSU (e_value=2e-23) Uncharacterized protein yuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1;; (*TAIR) AT1G24095.1 (e_value=3e-74) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:8523345-8524690 FORWARD LENGTH=213;; (*ITAG) Solyc05g006100.2.1 (e_value=4e-37) genomic_reference:SL2.40ch05 gene_region:824706-827085 transcript_region:SL2.40ch05:824706..827085+ functional_description:"YuxK (AHRD V1 *--- A3U9R9_CROAH); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00000136g0103.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|234 NbS00000136g0104.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|197|224 NbS00020357g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|171; (*GB) gi|2765240|emb|CAA73333.1| (e_value=3e-74) invertase inhibitor [Nicotiana tabacum];; (*SWP) sp|F4HWQ8|CVIF1_ARATH (e_value=1e-29) Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis thaliana GN=C/VIF1 PE=1 SV=1;; (*TAIR) AT1G47960.1 (e_value=8e-31) | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar inhibitor of fructosidase 1 | chr1:17681954-17683516 REVERSE LENGTH=205;; (*ITAG) Solyc12g099200.1.1 (e_value=4e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64775547-64776957 transcript_region:SL2.40ch12:64775547..64776957+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** O49908_TOBAC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00020357g0011.1 protein AED:0.03 eAED:0.03 QI:421|1|1|1|1|1|7|319|1017; (*GB) gi|225438996|ref|XP_002284429.1| (e_value=0.0) PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform 1 [Vitis vinifera];; (*SWP) sp|O81108|ACA2_ARATH (e_value=0.0) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1;; (*TAIR) AT4G37640.1 (e_value=0.0) | Symbols: ACA2 | calcium ATPase 2 | chr4:17683225-17686808 REVERSE LENGTH=1014;; (*ITAG) Solyc02g092450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48078895-48083354 transcript_region:SL2.40ch02:48078895..48083354+ go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00005680g0011.1 protein AED:0.14 eAED:0.14 QI:87|0.66|0.75|1|0.66|0.75|4|518|101; (*GB) gi|224065549|ref|XP_002301852.1| (e_value=6e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|P49690|RL23_ARATH (e_value=4e-66) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=3e-67) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=1e-67) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00005680g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.8|1|1|1|15|223|619; (*GB) gi|83284007|gb|ABC01911.1| (e_value=0.0) succinyl CoA ligase beta subunit-like protein [Solanum tuberosum];; (*SWP) sp|Q84LB6|SUCB_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G20420.1 (e_value=0.0) | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421;; (*ITAG) Solyc06g083790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45398741-45407021 transcript_region:SL2.40ch06:45398741..45407021+ go_terms:GO:0004775 functional_description:"Succinyl-CoA ligase (AHRD V1 **** B4D5D9_9BACT); contains Interpro domain(s) IPR005809 Succinyl-CoA synthetase, beta subunit "; GO:0004775 NbS00046560g0008.1 protein AED:0.28 eAED:0.28 QI:256|0.56|0.47|1|0.68|0.58|17|0|757; (*GB) gi|297825443|ref|XP_002880604.1| (e_value=3e-55) transcriptional factor B3 family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84WP3|REM17_ARATH (e_value=6e-52) B3 domain-containing protein REM17 OS=Arabidopsis thaliana GN=REM17 PE=2 SV=2;; (*TAIR) AT1G26680.1 (e_value=5e-53) | Symbols: | transcriptional factor B3 family protein | chr1:9219552-9223193 FORWARD LENGTH=920;; (*ITAG) Solyc08g006240.1.1 (e_value=1e-151) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00046560g0007.1 protein AED:0.20 eAED:0.38 QI:0|0|0.5|1|1|1|2|87|128 NbS00021270g0016.1 protein AED:0.34 eAED:0.43 QI:0|0|0|1|1|0.33|3|0|221; (*GB) gi|356575755|ref|XP_003556002.1| (e_value=9e-35) PREDICTED: uncharacterized protein LOC100781730 [Glycine max];; (*TAIR) AT1G71430.1 (e_value=5e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:26920564-26921058 FORWARD LENGTH=164;; (*ITAG) Solyc04g049660.1.1 (e_value=3e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:41915650-41916261 transcript_region:SL2.40ch04:41915650..41916261- functional_description:"Unknown Protein (AHRD V1)"; NbS00021270g0019.1 protein AED:0.76 eAED:0.76 QI:15|0|0|0.5|1|1|2|0|66 NbS00021270g0018.1 protein AED:0.19 eAED:0.19 QI:187|1|1|1|0.75|1|5|524|262; (*GB) gi|225448747|ref|XP_002281393.1| (e_value=2e-100) PREDICTED: UPF0405 protein C3orf75 homolog [Vitis vinifera];; (*SWP) sp|Q8L9Y2|ELP6_ARATH (e_value=3e-93) Elongator complex protein 6 OS=Arabidopsis thaliana GN=ELP6 PE=1 SV=1;; (*TAIR) AT4G10090.1 (e_value=2e-94) | Symbols: ELP6 | elongator protein 6 | chr4:6305455-6307286 FORWARD LENGTH=262;; (*ITAG) Solyc12g009500.1.1 (e_value=2e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2765413-2767627 transcript_region:SL2.40ch12:2765413..2767627+ functional_description:"UPF0405 protein C3orf75 homolog (AHRD V1 ***- CC075_RAT); contains Interpro domain(s) IPR018627 Protein of unknown function DUF2348 "; NbS00021270g0003.1 protein AED:0.15 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|224161391|ref|XP_002338324.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00041237g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.5|1|1|1|4|16|405; (*GB) gi|50058115|dbj|BAD27408.1| (e_value=0.0) actin [Nicotiana tabacum];; (*SWP) sp|P30173|ACT13_SOLTU (e_value=0.0) Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc01g104770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00041237g0002.1 protein AED:0.19 eAED:0.20 QI:861|0|0.5|1|0|0.5|2|0|339; (*GB) gi|224082440|ref|XP_002306694.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT1G76870.1 (e_value=3e-60) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | chr1:28857250-28858407 FORWARD LENGTH=385;; (*ITAG) Solyc01g104760.2.1 (e_value=2e-144) genomic_reference:SL2.40ch01 gene_region:84891715-84892996 transcript_region:SL2.40ch01:84891715..84892996- go_terms:GO:0003700 functional_description:"Homeodomain-like (AHRD V1 *-*- A7UQU9_MEDTR)"; GO:0003700 NbS00041237g0008.1 protein AED:0.00 eAED:0.00 QI:125|1|1|1|1|1|2|149|141 NbS00024051g0006.1 protein AED:0.18 eAED:0.21 QI:151|0.75|0.6|1|0.75|0.8|5|286|241; (*GB) gi|225458175|ref|XP_002281067.1| (e_value=4e-116) PREDICTED: transmembrane protein 136 [Vitis vinifera];; (*SWP) sp|Q6ZRR5|TM136_HUMAN (e_value=9e-15) Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2;; (*TAIR) AT1G35180.1 (e_value=2e-106) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:12877230-12878644 REVERSE LENGTH=231;; (*ITAG) Solyc12g089230.1.1 (e_value=3e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62774318-62783414 transcript_region:SL2.40ch12:62774318..62783414+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_HUMAN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0016021 NbS00024051g0009.1 protein AED:0.28 eAED:0.35 QI:321|0.72|0.5|1|0.90|0.75|12|0|360; (*GB) gi|8096273|dbj|BAA95791.1| (e_value=2e-175) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G75380.3 (e_value=4e-117) | Symbols: ATBBD1, BBD1 | bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325;; (*ITAG) Solyc12g089220.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62767870-62771271 transcript_region:SL2.40ch12:62767870..62771271- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00021731g0002.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|306; (*ITAG) Solyc01g021730.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00021731g0009.1 protein AED:0.33 eAED:0.72 QI:0|0.5|0|1|0|0|3|0|144; (*GB) gi|356511317|ref|XP_003524373.1| (e_value=7e-16) PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Glycine max];; (*SWP) sp|D9HP27|CNR11_MAIZE (e_value=6e-16) Cell number regulator 11 OS=Zea mays GN=CNR11 PE=2 SV=1;; (*TAIR) AT1G68610.1 (e_value=9e-15) | Symbols: PCR11 | PLANT CADMIUM RESISTANCE 11 | chr1:25763623-25764105 FORWARD LENGTH=160;; (*ITAG) Solyc01g005470.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:322628-324932 transcript_region:SL2.40ch01:322628..324932- functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00021731g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|345; (*GB) gi|225454236|ref|XP_002274751.1| (e_value=2e-152) PREDICTED: gibberellin 20 oxidase 1-B [Vitis vinifera];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=3e-32) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G23340.1 (e_value=5e-129) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12195719-12196793 REVERSE LENGTH=324;; (*ITAG) Solyc03g025490.2.1 (e_value=2e-136) genomic_reference:SL2.40ch03 gene_region:7271287-7272707 transcript_region:SL2.40ch03:7271287..7272707+ go_terms:GO:0045544 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 **** Q9FGV8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00021901g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.87|0.88|0.88|0.93|0.94|17|326|840; (*GB) gi|255536821|ref|XP_002509477.1| (e_value=0.0) coatomer gamma subunit, putative [Ricinus communis];; (*SWP) sp|Q6Z382|COPG2_ORYSJ (e_value=0.0) Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1;; (*TAIR) AT4G34450.1 (e_value=0.0) | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886;; (*ITAG) Solyc01g109540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbS00002709g0010.1 protein AED:0.18 eAED:0.18 QI:78|1|1|1|1|1|5|232|388; (*GB) gi|255570457|ref|XP_002526187.1| (e_value=0.0) protease C56, putative [Ricinus communis];; (*SWP) sp|Q9V1F8|PFPI_PYRAB (e_value=8e-26) Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1;; (*TAIR) AT3G02720.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr3:586336-588088 FORWARD LENGTH=388;; (*ITAG) Solyc02g081400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39962544-39967049 transcript_region:SL2.40ch02:39962544..39967049- go_terms:GO:0016798 functional_description:"Intracellular protease PfpI family protein expressed (AHRD V1 ***- Q2R1V5_ORYSJ); contains Interpro domain(s) IPR006286 Peptidase C56, PfpI "; GO:0016798 NbS00002709g0009.1 protein AED:0.10 eAED:0.19 QI:0|0.5|0.44|0.88|0.75|0.77|9|227|643; (*GB) gi|255570461|ref|XP_002526189.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q4V8K2|CTBL1_RAT (e_value=2e-101) Beta-catenin-like protein 1 OS=Rattus norvegicus GN=Ctnnbl1 PE=2 SV=1;; (*TAIR) AT3G02710.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:583184-585780 FORWARD LENGTH=529;; (*ITAG) Solyc02g081410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39968636-39972718 transcript_region:SL2.40ch02:39968636..39972718+ go_terms:GO:0042802 functional_description:"Beta-catenin-like protein 1 (AHRD V1 **-- B6SWH5_MAIZE); contains Interpro domain(s) IPR013180 Protein of unknown function DUF1716, eukaryotic "; GO:0042802 NbC24891365g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|388252715|gb|AFK24440.1| (e_value=4e-44) HSFA9 [Coffea arabica];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=2e-34) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=1e-35) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc07g040680.2.1 (e_value=5e-46) genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00023667g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|1|0.66|0.75|4|0|327; (*GB) gi|225437856|ref|XP_002264085.1| (e_value=2e-121) PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera];; (*SWP) sp|P24397|HY6H_HYONI (e_value=1e-84) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT4G10490.1 (e_value=4e-70) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6483900-6485179 FORWARD LENGTH=348;; (*ITAG) Solyc11g010410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3479897-3482408 transcript_region:SL2.40ch11:3479897..3482408+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO1_BRAJU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00004463g0004.1 protein AED:0.05 eAED:0.05 QI:256|1|1|1|1|1|3|527|253; (*GB) gi|255561478|ref|XP_002521749.1| (e_value=1e-47) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9SN28|ATL7_ARATH (e_value=2e-42) RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1;; (*TAIR) AT4G10150.1 (e_value=2e-43) | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236;; (*ITAG) Solyc06g064440.2.1 (e_value=1e-80) genomic_reference:SL2.40ch06 gene_region:36514027-36517636 transcript_region:SL2.40ch06:36514027..36517636- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbC25340731g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|147839113|emb|CAN68094.1| (e_value=1e-24) hypothetical protein VITISV_012751 [Vitis vinifera];; (*SWP) sp|D7MMW4|CSPLJ_ARALL (e_value=2e-11) CASP-like protein ARALYDRAFT_919556 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_919556 PE=3 SV=1;; (*TAIR) AT5G62820.1 (e_value=2e-11) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:25223828-25224898 REVERSE LENGTH=297;; (*ITAG) Solyc06g071440.2.1 (e_value=2e-73) genomic_reference:SL2.40ch06 gene_region:40346154-40349090 transcript_region:SL2.40ch06:40346154..40349090+ functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00021658g0004.1 protein AED:0.32 eAED:0.65 QI:330|0.83|0.42|1|1|1|7|0|576; (*GB) gi|225429462|ref|XP_002278761.1| (e_value=1e-108) PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera];; (*SWP) sp|Q3U0V1|FUBP2_MOUSE (e_value=5e-18) Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2;; (*TAIR) AT2G25970.1 (e_value=2e-74) | Symbols: | KH domain-containing protein | chr2:11071844-11075604 REVERSE LENGTH=632;; (*ITAG) Solyc12g095960.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63401514-63405993 transcript_region:SL2.40ch12:63401514..63405993- go_terms:GO:0051010 functional_description:"Insulin-like growth factor 2 mRNA-binding protein 2 (AHRD V1 *-** IF2B2_PONAB); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051010 NbS00057033g0001.1 protein AED:0.60 eAED:0.76 QI:0|0|0|1|1|1|2|0|73 NbS00026820g0004.1 protein AED:0.05 eAED:0.05 QI:280|0.71|0.87|0.87|0.28|0.5|8|1218|206; (*GB) gi|255546139|ref|XP_002514129.1| (e_value=5e-98) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT4G33050.4 (e_value=2e-79) | Symbols: EDA39 | calmodulin-binding family protein | chr4:15945235-15946736 REVERSE LENGTH=336;; (*ITAG) Solyc12g008960.1.1 (e_value=4e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2266946-2269413 transcript_region:SL2.40ch12:2266946..2269413+ functional_description:"Calmodulin-binding protein (AHRD V1 ***- A2I5F3_BETVU)"; NbS00032485g0004.1 protein AED:0.11 eAED:0.11 QI:14|1|1|1|0.84|0.85|14|596|763; (*GB) gi|225447178|ref|XP_002276594.1| (e_value=0.0) PREDICTED: centromere/kinetochore protein zw10 homolog [Vitis vinifera];; (*SWP) sp|O48626|ZW10_ARATH (e_value=0.0) Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana GN=ZW10 PE=2 SV=1;; (*TAIR) AT2G32900.1 (e_value=0.0) | Symbols: ATZW10 | centromere/kinetochore protein, putative (ZW10) | chr2:13953807-13957470 FORWARD LENGTH=742;; (*ITAG) Solyc05g043350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:55156215-55171263 transcript_region:SL2.40ch05:55156215..55171263+ go_terms:GO:0005634 functional_description:"Centromere/kinetochore protein zw10 homolog (AHRD V1 ***- ZW10_ARATH); contains Interpro domain(s) IPR009361 Centromere/kinetochore protein Zw10 "; GO:0005634 NbS00014525g0006.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|1|1|5|0|308; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-35) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=7e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00014525g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|174; (*GB) gi|255545146|ref|XP_002513634.1| (e_value=8e-96) NADH dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9FLX7|NDUA5_ARATH (e_value=2e-89) Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1;; (*TAIR) AT5G52840.1 (e_value=1e-90) | Symbols: | NADH-ubiquinone oxidoreductase-related | chr5:21413718-21414794 FORWARD LENGTH=169;; (*ITAG) Solyc03g007660.2.1 (e_value=6e-123) genomic_reference:SL2.40ch03 gene_region:2190944-2196447 transcript_region:SL2.40ch03:2190944..2196447+ go_terms:GO:0005743 functional_description:"NADH dehydrogenase (AHRD V1 ***- D3BQF3_POLPA); contains Interpro domain(s) IPR006806 ETC complex I subunit "; GO:0005743 NbS00014525g0010.1 protein AED:0.34 eAED:0.36 QI:162|0|0.5|1|0|0|2|0|64 NbS00014525g0014.1 protein AED:0.37 eAED:0.37 QI:366|0.45|0.5|1|0.45|0.41|12|0|342; (*GB) gi|255545150|ref|XP_002513636.1| (e_value=1e-137) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62650.1 (e_value=6e-126) | Symbols: | Tic22-like family protein | chr5:25152873-25155872 REVERSE LENGTH=529;; (*ITAG) Solyc03g007620.2.1 (e_value=2e-178) genomic_reference:SL2.40ch03 gene_region:2159739-2168471 transcript_region:SL2.40ch03:2159739..2168471+ functional_description:"Os01g0225300 protein (Fragment) (AHRD V1 *-*- Q0JPF5_ORYSJ)"; NbS00040127g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|108 NbS00013203g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|116490059|gb|ABJ98930.1| (e_value=2e-14) NIMIN2c protein [Nicotiana tabacum];; (*ITAG) Solyc03g119590.1.1 (e_value=1e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62207834-62208169 transcript_region:SL2.40ch03:62207834..62208169+ functional_description:"NIMIN2c protein (AHRD V1 ***- A0FJY4_TOBAC)"; NbS00021667g0009.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|0.33|0.25|4|0|559; (*GB) gi|356527801|ref|XP_003532495.1| (e_value=9e-171) PREDICTED: uncharacterized protein LOC100816702 [Glycine max];; (*SWP) sp|Q8TE76|MORC4_HUMAN (e_value=5e-40) MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2;; (*TAIR) AT5G50780.1 (e_value=5e-167) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc10g081760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00021667g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0|1|1|1|4|0|644; (*GB) gi|255553544|ref|XP_002517813.1| (e_value=0.0) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q8L709|CHX28_ARATH (e_value=0.0) Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2 SV=2;; (*TAIR) AT3G52080.1 (e_value=0.0) | Symbols: chx28 | cation/hydrogen exchanger 28 | chr3:19315090-19317735 FORWARD LENGTH=801;; (*ITAG) Solyc04g015990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6590404-6593289 transcript_region:SL2.40ch04:6590404..6593289+ go_terms:GO:0005451 functional_description:"Cation/H(+) antiporter 28 (AHRD V1 **** CHX28_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0005451 NbS00021667g0010.1 protein AED:0.43 eAED:0.52 QI:0|0|0|1|0|0|2|0|91 NbS00035144g0004.1 protein AED:0.21 eAED:0.30 QI:0|0|0|1|0.5|0.4|5|0|256; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-44) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=4e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026715g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|531; (*ITAG) Solyc03g117190.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60453120-60454403 transcript_region:SL2.40ch03:60453120..60454403+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026715g0001.1 protein AED:0.23 eAED:0.50 QI:234|0|0|1|1|1|2|0|139 NbS00035409g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|64420807|gb|AAY41426.1| (e_value=4e-61) putative L24 ribosomal protein [Ipomoea batatas];; (*SWP) sp|P51414|RL261_ARATH (e_value=8e-60) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2;; (*TAIR) AT3G49910.1 (e_value=6e-61) | Symbols: | Translation protein SH3-like family protein | chr3:18504311-18504751 FORWARD LENGTH=146;; (*ITAG) Solyc02g064670.1.1 (e_value=2e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30328162-30328602 transcript_region:SL2.40ch02:30328162..30328602+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L26-like 1 (AHRD V1 ***- B7TJ03_PIG); contains Interpro domain(s) IPR005756 Ribosomal protein L26, eukaryotic/archaeal "; GO:0003735,GO:0003723 NbS00035409g0016.1 protein AED:0.23 eAED:0.23 QI:21|1|0.8|1|1|1|5|0|165; (*GB) gi|371501274|dbj|BAL44264.1| (e_value=4e-118) ADP-ribosylation factor-like 8c [Nicotiana tabacum];; (*SWP) sp|Q6NZW8|AR8BA_DANRE (e_value=1e-85) ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1;; (*TAIR) AT3G49870.1 (e_value=1e-109) | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like A1C | chr3:18492674-18494021 REVERSE LENGTH=184;; (*ITAG) Solyc03g043960.2.1 (e_value=8e-119) genomic_reference:SL2.40ch03 gene_region:11718646-11726031 transcript_region:SL2.40ch03:11718646..11726031- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor-like protein (AHRD V1 ***- Q93Y31_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00035409g0019.1 protein AED:0.01 eAED:0.01 QI:2478|1|1|1|1|1|2|281|324; (*GB) gi|359480611|ref|XP_003632499.1| (e_value=3e-175) PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera];; (*TAIR) AT5G67540.1 (e_value=2e-170) | Symbols: | Arabinanase/levansucrase/invertase | chr5:26944253-26946058 REVERSE LENGTH=466;; (*ITAG) Solyc02g092360.2.1 (e_value=4e-179) genomic_reference:SL2.40ch02 gene_region:48028336-48032058 transcript_region:SL2.40ch02:48028336..48032058+ go_terms:GO:0005975,GO:0004867 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975,GO:0004867 NbS00035409g0024.1 protein AED:0.07 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.8|5|0|1277; (*GB) gi|147780567|emb|CAN75759.1| (e_value=0.0) hypothetical protein VITISV_017339 [Vitis vinifera];; (*SWP) sp|Q2TAW0|CNDG2_XENLA (e_value=7e-50) Condensin-2 complex subunit G2 OS=Xenopus laevis GN=ncapg2 PE=1 SV=1;; (*TAIR) AT1G64960.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:24129918-24134049 FORWARD LENGTH=1203;; (*ITAG) Solyc03g044020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11772149-11780960 transcript_region:SL2.40ch03:11772149..11780960- go_terms:GO:0005488 functional_description:"Condensin-2 complex subunit G2 (AHRD V1 *--- CNDG2_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00035409g0020.1 protein AED:0.32 eAED:0.32 QI:395|1|1|1|0.66|0.7|10|151|596; (*GB) gi|350535106|ref|NP_001234432.1| (e_value=0.0) N-acetyl-glutamate synthase [Solanum lycopersicum];; (*SWP) sp|Q4K434|ARGA_PSEF5 (e_value=4e-82) Amino-acid acetyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=argA PE=3 SV=1;; (*TAIR) AT2G22910.1 (e_value=0.0) | Symbols: NAGS1 | N-acetyl-l-glutamate synthase 1 | chr2:9749988-9752737 FORWARD LENGTH=609;; (*ITAG) Solyc03g043950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11708167-11717704 transcript_region:SL2.40ch03:11708167..11717704+ go_terms:GO:0008652,GO:0008152,GO:0005737 functional_description:"Amino-acid N-acetyltransferase (AHRD V1 ***- D5W990_BURSC); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008652,GO:0008152,GO:0005737 NbS00035409g0023.1 protein AED:0.37 eAED:0.37 QI:0|0.8|0.66|1|0.8|0.83|6|0|304; (*GB) gi|60279272|emb|CAA63968.1| (e_value=4e-153) pom30 [Solanum tuberosum];; (*SWP) sp|Q9FJX3|VDAC2_ARATH (e_value=2e-120) Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1;; (*TAIR) AT5G67500.1 (e_value=1e-121) | Symbols: VDAC2, ATVDAC2 | voltage dependent anion channel 2 | chr5:26935223-26937123 FORWARD LENGTH=276;; (*ITAG) Solyc03g044010.2.1 (e_value=5e-157) genomic_reference:SL2.40ch03 gene_region:11766864-11770767 transcript_region:SL2.40ch03:11766864..11770767- go_terms:GO:0008308 functional_description:"Mitochondrial porin (Voltage-dependent anion channel) outer membrane protein (AHRD V1 **** C4R1Z2_PICPG); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00016058g0006.1 protein AED:0.20 eAED:0.22 QI:0|0.89|0.75|1|0.57|0.7|20|15|951; (*GB) gi|225439735|ref|XP_002273013.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246491 [Vitis vinifera];; (*TAIR) AT2G37520.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15745033-15749615 REVERSE LENGTH=829;; (*ITAG) Solyc10g084650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63409506-63422148 transcript_region:SL2.40ch10:63409506..63422148- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7LJU5_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00027847g0001.1 protein AED:0.10 eAED:0.10 QI:58|0.8|0.66|1|0.8|0.66|6|843|185; (*GB) gi|225425222|ref|XP_002266814.1| (e_value=4e-18) PREDICTED: CCA-adding enzyme [Vitis vinifera];; (*TAIR) AT3G48830.1 (e_value=4e-13) | Symbols: | polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein | chr3:18103272-18110216 FORWARD LENGTH=881;; (*ITAG) Solyc01g009670.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:3907694-3914001 transcript_region:SL2.40ch01:3907694..3914001- go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *-*- CCA_STAES); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00027847g0006.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|147858477|emb|CAN83502.1| (e_value=2e-12) hypothetical protein VITISV_025795 [Vitis vinifera]; NbS00027847g0011.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0|0|4|0|300; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-28) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=3e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00027847g0010.1 protein AED:0.22 eAED:0.55 QI:0|0|0|1|0|0|3|0|192; (*GB) gi|224134853|ref|XP_002321921.1| (e_value=4e-66) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q6Z6D6|C7342_ORYSJ (e_value=3e-22) Cytochrome P450 734A2 OS=Oryza sativa subsp. japonica GN=CYP734A2 PE=2 SV=1;; (*TAIR) AT5G52400.1 (e_value=2e-50) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=1e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00012753g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|368; (*GB) gi|186461211|gb|ACC78283.1| (e_value=8e-145) putative laccase [Rosa hybrid cultivar];; (*SWP) sp|Q84J37|LAC15_ARATH (e_value=2e-112) Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1;; (*TAIR) AT5G48100.1 (e_value=2e-113) | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol oxidase family protein | chr5:19489530-19492582 REVERSE LENGTH=565;; (*ITAG) Solyc12g056820.1.1 (e_value=7e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00040336g0005.1 protein AED:0.12 eAED:0.22 QI:0|0|0|1|0|0|3|0|188; (*GB) gi|302143942|emb|CBI23047.3| (e_value=3e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21320.2 (e_value=2e-14) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc03g082710.2.1 (e_value=2e-62) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00019951g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|224103235|ref|XP_002312977.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=5e-33) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT3G50310.1 (e_value=1e-57) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc07g047910.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56433677-56437115 transcript_region:SL2.40ch07:56433677..56437115+ go_terms:GO:0005515,GO:0016301 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q8LCP0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00019951g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|224103235|ref|XP_002312977.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=5e-33) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT3G50310.1 (e_value=1e-57) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc07g047910.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56433677-56437115 transcript_region:SL2.40ch07:56433677..56437115+ go_terms:GO:0005515,GO:0016301 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q8LCP0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00004702g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.66|1|0.5|0.33|3|0|312; (*GB) gi|326534432|gb|ADZ76434.1| (e_value=3e-101) myricetin O-methyltransferase 2 [Solanum habrochaites];; (*SWP) sp|B0EXJ8|HTOMT_CATRO (e_value=6e-85) Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=7e-39) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g068550.2.1 (e_value=3e-131) genomic_reference:SL2.40ch01 gene_region:70160716-70161864 transcript_region:SL2.40ch01:70160716..70161864+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00000732g0004.1 protein AED:0.08 eAED:0.08 QI:415|0.83|0.71|1|1|1|7|358|613; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=0.0) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|Q38890|GUN25_ARATH (e_value=0.0) Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1;; (*TAIR) AT5G49720.1 (e_value=0.0) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc01g102580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83117822-83121772 transcript_region:SL2.40ch01:83117822..83121772- go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00041419g0007.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|299; (*GB) gi|255554749|ref|XP_002518412.1| (e_value=5e-149) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46700.1 (e_value=3e-124) | Symbols: TET1, TRN2 | Tetraspanin family protein | chr5:18951035-18952439 FORWARD LENGTH=269;; (*ITAG) Solyc08g076850.2.1 (e_value=2e-165) genomic_reference:SL2.40ch08 gene_region:57913123-57915117 transcript_region:SL2.40ch08:57913123..57915117+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00041419g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|224071365|ref|XP_002303424.1| (e_value=9e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XLY8|ATL41_ORYSJ (e_value=4e-56) E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2;; (*TAIR) AT3G03550.1 (e_value=5e-57) | Symbols: | RING/U-box superfamily protein | chr3:850391-851461 REVERSE LENGTH=356;; (*ITAG) Solyc08g076830.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:57905210-57906235 transcript_region:SL2.40ch08:57905210..57906235- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00041419g0010.1 protein AED:0.33 eAED:0.43 QI:0|0.66|0.25|1|0|0|4|0|181; (*GB) gi|297742089|emb|CBI33876.3| (e_value=5e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|P19684|ROC5_NICSY (e_value=4e-12) 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT2G35410.1 (e_value=2e-35) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14898341-14899590 FORWARD LENGTH=308;; (*ITAG) Solyc08g076840.2.1 (e_value=7e-53) genomic_reference:SL2.40ch08 gene_region:57908316-57911467 transcript_region:SL2.40ch08:57908316..57911467- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-- PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00043993g0007.1 protein AED:0.42 eAED:0.42 QI:0|1|0.66|1|1|1|3|0|140; (*GB) gi|350536977|ref|NP_001234786.1| (e_value=1e-85) calmodulin [Solanum lycopersicum];; (*SWP) sp|P27161|CALM_SOLLC (e_value=4e-87) Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=9e-84) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc03g098050.2.1 (e_value=2e-88) genomic_reference:SL2.40ch03 gene_region:53844509-53847335 transcript_region:SL2.40ch03:53844509..53847335+ go_terms:GO:0005516,GO:0005509 functional_description:"Calmodulin 3 protein (AHRD V1 **** Q712P2_CAPAN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005516,GO:0005509 NbS00032275g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.4|0.33|0.83|0.6|0.5|6|380|485; (*GB) gi|224144954|ref|XP_002325473.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=8e-159) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=6e-160) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc04g056560.2.1 (e_value=7e-179) genomic_reference:SL2.40ch04 gene_region:53677858-53684598 transcript_region:SL2.40ch04:53677858..53684598+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- Q4L0F8_MEDSA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00011165g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|224136107|ref|XP_002327382.1| (e_value=3e-43) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9C9I2|ERF21_ARATH (e_value=3e-41) Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1;; (*TAIR) AT1G71450.1 (e_value=2e-42) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26927088-26927639 FORWARD LENGTH=183;; (*ITAG) Solyc11g042560.1.1 (e_value=8e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:32341602-32342123 transcript_region:SL2.40ch11:32341602..32342123- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00011165g0002.1 protein AED:0.30 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|224136103|ref|XP_002327381.1| (e_value=6e-15) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*ITAG) Solyc11g042560.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:32341602-32342123 transcript_region:SL2.40ch11:32341602..32342123- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00011165g0113.1 protein AED:0.03 eAED:0.03 QI:141|0.66|0.75|1|0.66|0.5|4|369|294 NbS00011165g0105.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|173 NbS00011165g0107.1 protein AED:0.45 eAED:0.64 QI:0|0|0|1|1|1|3|0|193 NbS00011165g0112.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|140 NbS00011165g0118.1 protein AED:0.21 eAED:0.21 QI:189|0.8|0.66|1|0|0|6|426|552 NbS00028500g0003.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|0|0|3|0|165 NbS00015602g0009.1 protein AED:0.17 eAED:0.18 QI:0|1|0.86|1|0.5|0.73|15|0|556; (*GB) gi|255575318|ref|XP_002528562.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FI00|MLO11_ARATH (e_value=0.0) MLO-like protein 11 OS=Arabidopsis thaliana GN=MLO11 PE=2 SV=1;; (*TAIR) AT5G53760.2 (e_value=0.0) | Symbols: MLO11, ATMLO11 | Seven transmembrane MLO family protein | chr5:21823055-21826289 FORWARD LENGTH=573;; (*ITAG) Solyc07g063260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62995345-63002900 transcript_region:SL2.40ch07:62995345..63002900- go_terms:GO:0016021 functional_description:"MLO-like protein 14 (AHRD V1 ***- B6SWK8_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00015602g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|57013966|ref|YP_173438.1| (e_value=9e-31) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00015602g0008.1 protein AED:0.40 eAED:0.49 QI:3|1|0|1|1|1|2|0|62; (*GB) gi|255575314|ref|XP_002528560.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G15395.4 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5201014-5201307 FORWARD LENGTH=59; NbS00015602g0010.1 protein AED:0.25 eAED:0.37 QI:80|0|0|1|0|0|2|0|99 NbS00001829g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.75|0.6|1|1|0.8|5|60|415; (*GB) gi|225463024|ref|XP_002265610.1| (e_value=6e-138) PREDICTED: uncharacterized protein LOC100263642 [Vitis vinifera];; (*ITAG) Solyc07g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1936301-1939190 transcript_region:SL2.40ch07:1936301..1939190+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001829g0005.1 protein AED:0.22 eAED:0.22 QI:148|1|1|1|1|1|3|331|163; (*GB) gi|225463022|ref|XP_002266038.1| (e_value=3e-34) PREDICTED: E3 ubiquitin-protein ligase arkadia-like isoform 1 [Vitis vinifera];; (*TAIR) AT2G15580.1 (e_value=1e-23) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196;; (*ITAG) Solyc07g007180.2.1 (e_value=2e-72) genomic_reference:SL2.40ch07 gene_region:1931106-1935135 transcript_region:SL2.40ch07:1931106..1935135+ go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- B6TJA7_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00047436g0006.1 protein AED:0.06 eAED:0.06 QI:88|0.5|0.42|1|0|0.14|7|253|813; (*GB) gi|359493705|ref|XP_003634654.1| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Vitis vinifera];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G21380.1 (e_value=0.0) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc05g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2684709-2689587 transcript_region:SL2.40ch05:2684709..2689587- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00042207g0011.1 protein AED:0.18 eAED:0.18 QI:650|0.85|0.87|1|0.71|0.75|8|238|529; (*GB) gi|356538686|ref|XP_003537832.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Glycine max];; (*SWP) sp|Q803I8|SYVN1_DANRE (e_value=9e-82) E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2;; (*TAIR) AT3G16090.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492;; (*ITAG) Solyc03g096930.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52757804-52765180 transcript_region:SL2.40ch03:52757804..52765180- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 **-- Q4WCD2_ASPFU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00042207g0010.1 protein AED:0.27 eAED:0.34 QI:185|0.4|0.5|1|0.6|0.66|6|575|259; (*GB) gi|18396441|ref|NP_566192.1| (e_value=2e-74) putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Arabidopsis thaliana];; (*SWP) sp|Q9M9M9|NDUAC_ARATH (e_value=5e-76) Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1;; (*TAIR) AT3G03100.1 (e_value=4e-77) | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr3:705564-707578 REVERSE LENGTH=159;; (*ITAG) Solyc03g096940.2.1 (e_value=4e-80) genomic_reference:SL2.40ch03 gene_region:52766913-52772068 transcript_region:SL2.40ch03:52766913..52772068+ go_terms:GO:0050136,GO:0050897 functional_description:"NADH ubiquinone oxidoreductase subunit (AHRD V1 *-** D5RN95_9PROT); contains Interpro domain(s) IPR007763 NADH:ubiquinone oxidoreductase, 17.2 kD subunit "; GO:0050136,GO:0050897 NbS00006240g0004.1 protein AED:0.10 eAED:0.10 QI:172|0.85|0.87|1|0.57|0.37|8|280|459; (*GB) gi|225453226|ref|XP_002265630.1| (e_value=0.0) PREDICTED: ent-kaurenoic acid oxidase 2 [Vitis vinifera];; (*SWP) sp|O23051|KAO1_ARATH (e_value=0.0) Ent-kaurenoic acid oxidase 1 OS=Arabidopsis thaliana GN=KAO1 PE=2 SV=1;; (*TAIR) AT1G05160.1 (e_value=0.0) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc01g080900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72751511-72755773 transcript_region:SL2.40ch01:72751511..72755773+ go_terms:GO:0051777 functional_description:"Cytochrome P450"; GO:0051777 NbS00038212g0002.1 protein AED:0.01 eAED:0.06 QI:0|0|0|1|1|1|2|0|280; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=3e-76) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=1e-32) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083000.1.1 (e_value=6e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00016747g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|208; (*GB) gi|388518463|gb|AFK47293.1| (e_value=2e-83) unknown [Lotus japonicus];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=6e-72) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=4e-73) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc05g048740.2.1 (e_value=5e-102) genomic_reference:SL2.40ch05 gene_region:58452352-58453745 transcript_region:SL2.40ch05:58452352..58453745+ go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00016747g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|296085927|emb|CBI31368.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G03500.1 (e_value=2e-14) | Symbols: | Ankyrin repeat family protein | chr4:1553453-1556571 FORWARD LENGTH=652;; (*ITAG) Solyc05g055970.2.1 (e_value=4e-55) genomic_reference:SL2.40ch05 gene_region:64527283-64529803 transcript_region:SL2.40ch05:64527283..64529803- functional_description:"Accelerated cell death 6 (Fragment) (AHRD V1 *--- D9IWX3_ARATH)"; NbS00051072g0001.1 protein AED:0.01 eAED:0.01 QI:262|0.5|0.66|1|0|0|3|344|564; (*GB) gi|71726942|gb|AAZ39642.1| (e_value=0.0) cytochrome P450 fatty acid omega-hydroxylase [Petunia x hybrida];; (*SWP) sp|O23066|C86A2_ARATH (e_value=0.0) Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1;; (*TAIR) AT4G00360.1 (e_value=0.0) | Symbols: CYP86A2, ATT1 | cytochrome P450, family 86, subfamily A, polypeptide 2 | chr4:160951-162778 FORWARD LENGTH=553;; (*ITAG) Solyc08g081220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61446043-61447707 transcript_region:SL2.40ch08:61446043..61447707- go_terms:GO:0008393,GO:0019825 functional_description:"Cytochrome P450"; GO:0008393,GO:0019825 NbS00051072g0009.1 protein AED:0.21 eAED:0.22 QI:0|0.8|0.5|1|0.2|0.33|6|0|291; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=2e-127) transcription factor IIIA [Solanum lycopersicum];; (*SWP) sp|P18729|ZG57_XENLA (e_value=8e-15) Gastrula zinc finger protein XlCGF57.1 (Fragment) OS=Xenopus laevis PE=3 SV=1;; (*TAIR) AT1G72050.1 (e_value=1e-73) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115808-27117228 FORWARD LENGTH=324;; (*ITAG) Solyc10g077110.1.1 (e_value=3e-130) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00051072g0003.1 protein AED:0.13 eAED:0.13 QI:341|1|1|1|1|1|4|10|78; (*GB) gi|225426444|ref|XP_002275257.1| (e_value=1e-31) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic isoform 2 [Vitis vinifera];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=2e-29) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23420.2 (e_value=1e-26) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12226288-12228562 FORWARD LENGTH=316;; (*ITAG) Solyc08g081200.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:61431924-61435328 transcript_region:SL2.40ch08:61431924..61435328+ go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LZK0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00011406g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|224087094|ref|XP_002308063.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=9e-44) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=7e-45) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc07g007950.1.1 (e_value=6e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2646086-2646754 transcript_region:SL2.40ch07:2646086..2646754+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011406g0006.1 protein AED:0.10 eAED:0.13 QI:129|0.66|0.57|1|0.33|0.57|7|0|304; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=6e-97) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.1 (e_value=6e-68) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=264;; (*ITAG) Solyc12g009620.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2884183-2890685 transcript_region:SL2.40ch12:2884183..2890685+ functional_description:"CUE domain containing protein (AHRD V1 ***- B6TIC6_MAIZE)"; NbS00016451g0013.1 protein AED:0.09 eAED:0.09 QI:490|0.5|0.4|1|0.5|0.2|5|498|720; (*GB) gi|225450657|ref|XP_002278421.1| (e_value=5e-97) PREDICTED: uncharacterized protein LOC100240780 [Vitis vinifera];; (*TAIR) AT3G05670.1 (e_value=2e-79) | Symbols: | RING/U-box protein | chr3:1653888-1657022 FORWARD LENGTH=883;; (*ITAG) Solyc01g100130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81986149-81990012 transcript_region:SL2.40ch01:81986149..81990012+ go_terms:GO:0008270 functional_description:"PHD-finger family protein (AHRD V1 *-*- B6U0S2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00016451g0016.1 protein AED:0.75 eAED:0.94 QI:0|0|0|0.4|1|1|5|0|161 NbS00016451g0005.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=9e-64) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=8e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=2e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbS00016451g0014.1 protein AED:0.11 eAED:0.11 QI:268|0.94|0.88|1|0.88|0.83|18|330|1024; (*GB) gi|359487657|ref|XP_002278468.2| (e_value=0.0) PREDICTED: kinesin-4-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G47500.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983;; (*ITAG) Solyc01g100120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81969682-81976667 transcript_region:SL2.40ch01:81969682..81976667- go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00016451g0015.1 protein AED:0.25 eAED:0.26 QI:349|0.75|0.6|1|0.5|0.6|5|400|257; (*GB) gi|255542834|ref|XP_002512480.1| (e_value=1e-94) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q84J70|DI193_ARATH (e_value=1e-62) Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1;; (*TAIR) AT3G05700.1 (e_value=9e-64) | Symbols: | Drought-responsive family protein | chr3:1682432-1684323 REVERSE LENGTH=223;; (*ITAG) Solyc01g100140.2.1 (e_value=1e-75) genomic_reference:SL2.40ch01 gene_region:81990210-81994990 transcript_region:SL2.40ch01:81990210..81994990- go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 3 (AHRD V1 **-- DI193_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00019177g0010.1 protein AED:0.29 eAED:0.29 QI:126|0.5|0.33|1|0|0|3|0|107; (*GB) gi|50346893|gb|AAT75153.1| (e_value=1e-35) short-chain dehydrogenase/reductase [Solanum tuberosum];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=7e-32) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=6e-33) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc04g071960.2.1 (e_value=6e-45) genomic_reference:SL2.40ch04 gene_region:56567713-56570028 transcript_region:SL2.40ch04:56567713..56570028- go_terms:GO:0018502 functional_description:"2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (AHRD V1 **** LINC_PSEPA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0018502 NbS00019177g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|218; (*GB) gi|255566690|ref|XP_002524329.1| (e_value=4e-61) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G22790.2 (e_value=7e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8070271-8071292 FORWARD LENGTH=216;; (*ITAG) Solyc04g071970.2.1 (e_value=2e-100) genomic_reference:SL2.40ch04 gene_region:56571411-56574425 transcript_region:SL2.40ch04:56571411..56574425- functional_description:"Light stress-responsive one-helix protein-like (AHRD V1 ***- Q5ZC72_ORYSJ)"; NbS00020509g0006.1 protein AED:0.18 eAED:0.19 QI:0|0.83|0.57|1|0.83|0.71|7|0|642; (*GB) gi|225443835|ref|XP_002266934.1| (e_value=1e-159) PREDICTED: uncharacterized protein LOC100248051 [Vitis vinifera];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=3e-94) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT4G18570.1 (e_value=4e-140) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10231439-10234534 FORWARD LENGTH=642;; (*ITAG) Solyc02g077090.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:36718822-36723310 transcript_region:SL2.40ch02:36718822..36723310- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; NbS00003263g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|225424001|ref|XP_002283553.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100244058 [Vitis vinifera];; (*ITAG) Solyc05g009420.1.1 (e_value=1e-84) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:3585340-3586281 transcript_region:SL2.40ch05:3585340..3586281- functional_description:"Unknown Protein (AHRD V1)"; NbS00003538g0011.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.75|0|0.25|4|0|408; (*GB) gi|297740936|emb|CBI31248.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G02760.1 (e_value=2e-14) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:597588-600650 REVERSE LENGTH=883;; (*ITAG) Solyc01g102800.2.1 (e_value=6e-113) genomic_reference:SL2.40ch01 gene_region:83261245-83268236 transcript_region:SL2.40ch01:83261245..83268236+ go_terms:GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 functional_description:"Histidyl-tRNA synthetase (AHRD V1 *-*- Q52NV4_HUMAN); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 NbS00003538g0003.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|82; (*ITAG) Solyc01g102800.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:83261245-83268236 transcript_region:SL2.40ch01:83261245..83268236+ go_terms:GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 functional_description:"Histidyl-tRNA synthetase (AHRD V1 *-*- Q52NV4_HUMAN); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 NbS00003538g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|159 NbS00021307g0002.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|59 NbS00021307g0003.1 protein AED:0.30 eAED:0.56 QI:0|0|0|1|0|0|3|0|200; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-51) hypothetical protein [Nicotiana tabacum]; NbS00031360g0003.1 protein AED:0.35 eAED:0.35 QI:169|0.88|0.9|1|0.55|0.6|10|345|487; (*GB) gi|255549236|ref|XP_002515672.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=1e-137) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc09g098340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67456196-67464916 transcript_region:SL2.40ch09:67456196..67464916- go_terms:GO:0005515 functional_description:"Aspartic proteinase-like protein 2 (AHRD V1 **-- ASPL2_ARATH); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00000069g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|225462703|ref|XP_002267400.1| (e_value=3e-98) PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=4e-61) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=3e-62) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g051840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:32043471-32044523 transcript_region:SL2.40ch06:32043471..32044523+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00055892g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|395; (*GB) gi|18000070|gb|AAL54886.1|AF092915_1 (e_value=0.0) cytochrome P450-dependent fatty acid hydroxylase [Nicotiana tabacum];; (*SWP) sp|P98188|C94A2_VICSA (e_value=0.0) Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1;; (*TAIR) AT3G56630.1 (e_value=1e-123) | Symbols: CYP94D2 | cytochrome P450, family 94, subfamily D, polypeptide 2 | chr3:20978953-20980512 FORWARD LENGTH=499;; (*ITAG) Solyc09g066150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60174324-60175832 transcript_region:SL2.40ch09:60174324..60175832+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000091g0003.1 protein AED:0.11 eAED:0.11 QI:54|1|1|1|1|1|2|678|796; (*GB) gi|225428729|ref|XP_002281969.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Vitis vinifera];; (*SWP) sp|Q9XIL5|PP154_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3;; (*TAIR) AT2G15820.1 (e_value=0.0) | Symbols: OTP51 | endonucleases | chr2:6888734-6891360 REVERSE LENGTH=849;; (*ITAG) Solyc11g066850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49736054-49739917 transcript_region:SL2.40ch11:49736054..49739917+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KRL4_ARALY); contains Interpro domain(s) IPR004860 LAGLIDADG DNA endonuclease "; GO:0004519 NbS00019659g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|0.33|0.5|4|1899|96 NbS00002305g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.85|1|1|1|7|360|582; (*GB) gi|357481949|ref|XP_003611260.1| (e_value=0.0) Stress-induced-phosphoprotein [Medicago truncatula];; (*SWP) sp|Q43468|STIP_SOYBN (e_value=0.0) Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1;; (*TAIR) AT4G12400.2 (e_value=0.0) | Symbols: Hop3 | stress-inducible protein, putative | chr4:7338866-7341239 REVERSE LENGTH=558;; (*ITAG) Solyc08g079170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbS00002305g0002.1 protein AED:0.45 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|63 NbS00002305g0102.1 protein AED:0.08 eAED:0.10 QI:0|0.25|0.2|1|1|1|5|0|387 NbS00048628g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|297796031|ref|XP_002865900.1| (e_value=7e-67) sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O26351|Y249_METTH (e_value=1e-14) Uncharacterized protein MTH_249 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_249 PE=3 SV=1;; (*TAIR) AT5G52190.1 (e_value=9e-65) | Symbols: | Sugar isomerase (SIS) family protein | chr5:21201817-21202443 REVERSE LENGTH=208;; (*ITAG) Solyc03g025990.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7788120-7788731 transcript_region:SL2.40ch03:7788120..7788731+ functional_description:"Hexulose-6-phosphate isomerase (AHRD V1 **-- Q2RUM7_RHORT)"; NbS00048628g0005.1 protein AED:0.20 eAED:0.20 QI:397|1|0.83|1|0.8|0.83|6|309|518; (*GB) gi|297741054|emb|CBI31785.3| (e_value=5e-38) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g025970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7774947-7780827 transcript_region:SL2.40ch03:7774947..7780827+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9I4C0_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00048628g0008.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|1|0.66|3|376|173; (*GB) gi|224134755|ref|XP_002321898.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52200.1 (e_value=5e-32) | Symbols: | phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191;; (*ITAG) Solyc03g025980.2.1 (e_value=5e-82) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00025512g0009.1 protein AED:0.13 eAED:0.15 QI:30|1|0.75|1|0.33|0.5|4|414|249; (*GB) gi|225455370|ref|XP_002277586.1| (e_value=7e-111) PREDICTED: uncharacterized protein LOC100257134 [Vitis vinifera];; (*TAIR) AT3G49250.1 (e_value=5e-85) | Symbols: DMS3, IDN1 | defective in meristem silencing 3 | chr3:18258613-18260803 REVERSE LENGTH=420;; (*ITAG) Solyc03g083210.2.1 (e_value=6e-139) genomic_reference:SL2.40ch03 gene_region:46596166-46611121 transcript_region:SL2.40ch03:46596166..46611121+ go_terms:GO:0005515 functional_description:"At5g24280 (Fragment) (AHRD V1 *-*- Q3YIX0_ARATH)"; GO:0005515 NbS00025512g0006.1 protein AED:0.51 eAED:0.51 QI:0|0.75|0.8|0.8|0.75|0.6|5|190|118; (*GB) gi|356551371|ref|XP_003544049.1| (e_value=9e-26) PREDICTED: uncharacterized protein LOC100800662 [Glycine max];; (*TAIR) AT4G00990.1 (e_value=8e-21) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr4:427035-431535 FORWARD LENGTH=840;; (*ITAG) Solyc03g083240.2.1 (e_value=4e-45) genomic_reference:SL2.40ch03 gene_region:46636053-46644637 transcript_region:SL2.40ch03:46636053..46644637+ go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00025512g0003.1 protein AED:0.20 eAED:0.60 QI:0|0.7|0.54|1|1|1|11|1677|883; (*GB) gi|147789000|emb|CAN64660.1| (e_value=3e-19) hypothetical protein VITISV_009615 [Vitis vinifera];; (*ITAG) Solyc03g083240.2.1 (e_value=1e-37) genomic_reference:SL2.40ch03 gene_region:46636053-46644637 transcript_region:SL2.40ch03:46636053..46644637+ go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00025512g0002.1 protein AED:0.07 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|225423611|ref|XP_002274383.1| (e_value=1e-92) PREDICTED: putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C [Vitis vinifera];; (*SWP) sp|Q54M40|PIGC_DICDI (e_value=1e-22) Putative phosphatidylinositol N-acetylglucosaminyltransferase subunit C OS=Dictyostelium discoideum GN=pigC PE=3 SV=1;; (*TAIR) AT2G34980.1 (e_value=6e-83) | Symbols: SETH1 | phosphatidylinositolglycan synthase family protein | chr2:14748967-14749878 FORWARD LENGTH=303;; (*ITAG) Solyc02g081610.1.1 (e_value=6e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40073643-40074554 transcript_region:SL2.40ch02:40073643..40074554- go_terms:GO:0016740 functional_description:"Phosphatidylinositol UDP-GlcNAc transferase PIG-C (AHRD V1 *-** Q6Q2B3_ASPFU); contains Interpro domain(s) IPR009450 Phosphatidylinositol N-acetylglucosaminyltransferase "; GO:0016740 NbS00004954g0006.1 protein AED:0.14 eAED:0.14 QI:230|1|0.66|1|1|1|3|198|354; (*GB) gi|225464748|ref|XP_002264621.1| (e_value=6e-150) PREDICTED: zinc transporter 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6L8G0|ZIP5_ORYSJ (e_value=5e-123) Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=3e-122) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc02g032100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:18213494-18215411 transcript_region:SL2.40ch02:18213494..18215411+ go_terms:GO:0000006,GO:0000007 functional_description:"Low affinity zinc transporter (AHRD V1 **** A3LU47_PICST); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006,GO:0000007 NbS00004954g0101.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|118 NbS00004954g0112.1 protein AED:0.20 eAED:0.46 QI:0|0|0|1|0|0|3|0|220 NbS00005060g0004.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|255567715|ref|XP_002524836.1| (e_value=5e-124) Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=2e-47) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=2e-97) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051930.1.1 (e_value=3e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57797942-57799054 transcript_region:SL2.40ch07:57797942..57799054+ go_terms:GO:0004691 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00005060g0010.1 protein AED:0.06 eAED:0.06 QI:114|1|1|1|0.75|0.8|5|297|563; (*GB) gi|359485613|ref|XP_002269696.2| (e_value=2e-169) PREDICTED: WRKY transcription factor 6-like [Vitis vinifera];; (*SWP) sp|Q9XEC3|WRK42_ARATH (e_value=5e-122) Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1;; (*TAIR) AT4G04450.1 (e_value=3e-123) | Symbols: WRKY42, AtWRKY42 | WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528;; (*ITAG) Solyc07g051840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57685533-57688827 transcript_region:SL2.40ch07:57685533..57688827+ go_terms:GO:0005515,GO:0010843 functional_description:"WRKY transcription factor (AHRD V1 ***- D0PSE9_9LAMI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00005060g0009.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|223453048|gb|ACM89788.1| (e_value=2e-28) cytochrome P450 monooxygenase CYP736B [Vitis arizonica x Vitis rupestris];; (*ITAG) Solyc04g054260.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:51369319-51371436 transcript_region:SL2.40ch04:51369319..51371436- go_terms:GO:0019825,GO:0046424 functional_description:"Cytochrome P450"; GO:0019825,GO:0046424 NbS00005060g0011.1 protein AED:0.28 eAED:0.49 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|356525523|ref|XP_003531374.1| (e_value=1e-24) PREDICTED: cytochrome P450 71A1-like [Glycine max];; (*SWP) sp|P24465|C71A1_PERAE (e_value=1e-12) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT5G42590.1 (e_value=2e-12) | Symbols: CYP71A16 | cytochrome P450, family 71, subfamily A, polypeptide 16 | chr5:17031217-17033640 REVERSE LENGTH=497;; (*ITAG) Solyc04g054250.2.1 (e_value=3e-32) genomic_reference:SL2.40ch04 gene_region:51284802-51286455 transcript_region:SL2.40ch04:51284802..51286455+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00046503g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|2|330|261; (*GB) gi|157849758|gb|ABV89662.1| (e_value=2e-155) dehydration-responsive protein-related [Brassica rapa];; (*SWP) sp|Q8VZV7|PMT9_ARATH (e_value=2e-154) Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1;; (*TAIR) AT5G14430.2 (e_value=1e-155) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4653092-4655741 FORWARD LENGTH=612;; (*ITAG) Solyc02g067890.2.1 (e_value=2e-176) genomic_reference:SL2.40ch02 gene_region:32557610-32561836 transcript_region:SL2.40ch02:32557610..32561836- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00017164g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.44|1|0.75|0.77|9|0|812; (*GB) gi|33637487|gb|AAQ23899.1| (e_value=0.0) RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=2e-85) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=0.0) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00051848g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.66|1|1|1|3|0|219; (*GB) gi|297738885|emb|CBI28130.3| (e_value=2e-65) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19950.2 (e_value=3e-42) | Symbols: | Domain of unknown function (DUF1767) | chr5:6741163-6743702 REVERSE LENGTH=443;; (*ITAG) Solyc12g006710.1.1 (e_value=8e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1172166-1176468 transcript_region:SL2.40ch12:1172166..1176468- functional_description:"Tudor domain containing 3 (Fragment) (AHRD V1 *-*- B1AMN9_HUMAN); contains Interpro domain(s) IPR013894 Region of unknown function DUF1767 "; NbS00015131g0016.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|1|0.4|0.5|6|0|201; (*GB) gi|225436136|ref|XP_002274971.1| (e_value=7e-31) PREDICTED: uncharacterized protein LOC100252988 [Vitis vinifera];; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=2e-18) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=2e-19) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc11g068960.1.1 (e_value=7e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50615168-50621595 transcript_region:SL2.40ch11:50615168..50621595+ go_terms:GO:0045449 functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *--- Y1462_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00015131g0011.1 protein AED:0.38 eAED:0.49 QI:0|0.5|0.2|1|0.5|0.4|5|0|417; (*GB) gi|242037057|ref|XP_002465923.1| (e_value=2e-21) hypothetical protein SORBIDRAFT_01g048290 [Sorghum bicolor];; (*SWP) sp|Q5NB82|NLP3_ORYSJ (e_value=3e-22) Protein NLP3 OS=Oryza sativa subsp. japonica GN=NLP3 PE=3 SV=1;; (*TAIR) AT1G64530.1 (e_value=1e-22) | Symbols: | Plant regulator RWP-RK family protein | chr1:23959820-23962896 FORWARD LENGTH=841;; (*ITAG) Solyc08g082750.2.1 (e_value=9e-24) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00015131g0018.1 protein AED:0.07 eAED:0.08 QI:336|0.66|0.57|1|0.83|0.71|7|0|603; (*GB) gi|225435520|ref|XP_002285555.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263843 [Vitis vinifera];; (*TAIR) AT4G12070.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7231941-7234272 FORWARD LENGTH=483;; (*ITAG) Solyc11g056620.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:44834269-44843471 transcript_region:SL2.40ch11:44834269..44843471- functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ)"; NbS00015131g0017.1 protein AED:0.43 eAED:0.80 QI:0|0.28|0.12|0.75|0.85|0.87|8|0|435; (*GB) gi|255555651|ref|XP_002518861.1| (e_value=3e-29) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8RWY4|NLP6_ARATH (e_value=3e-28) Protein NLP6 OS=Arabidopsis thaliana GN=NLP6 PE=2 SV=2;; (*TAIR) AT1G64530.1 (e_value=2e-29) | Symbols: | Plant regulator RWP-RK family protein | chr1:23959820-23962896 FORWARD LENGTH=841;; (*ITAG) Solyc08g082750.2.1 (e_value=4e-35) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00024690g0001.1 protein AED:0.00 eAED:0.01 QI:345|1|0.5|1|0|0|2|0|808; (*GB) gi|224057750|ref|XP_002299311.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9QYI4|DJB12_MOUSE (e_value=3e-11) DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2;; (*TAIR) AT5G53150.1 (e_value=6e-88) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726;; (*ITAG) Solyc03g019640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:6600822-6607135 transcript_region:SL2.40ch03:6600822..6607135- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6JZX2_SCHJY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00024690g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0.2|1|0.5|0.4|5|0|634; (*GB) gi|255540211|ref|XP_002511170.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G14120.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:4556308-4558447 FORWARD LENGTH=579;; (*ITAG) Solyc03g019650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6609000-6612842 transcript_region:SL2.40ch03:6609000..6612842- functional_description:"Nodulin-like protein (AHRD V1 *-*- B6U8U8_MAIZE); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00021796g0009.1 protein AED:0.12 eAED:0.12 QI:624|0.6|0.66|0.83|0.6|0.5|6|263|479; (*GB) gi|255571909|ref|XP_002526897.1| (e_value=2e-107) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT2G40070.1 (e_value=2e-83) | Symbols: | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16728378-16731160 REVERSE LENGTH=607;; (*ITAG) Solyc03g096090.2.1 (e_value=4e-116) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00021796g0005.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|225448379|ref|XP_002269271.1| (e_value=2e-82) PREDICTED: pleckstrin homology domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=4e-71) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT5G05710.1 (e_value=2e-81) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144;; (*ITAG) Solyc05g052720.1.1 (e_value=1e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62059708-62060151 transcript_region:SL2.40ch05:62059708..62060151- go_terms:GO:0035091 functional_description:"Pleckstrin homology domain containing family A (Phosphoinositide binding specific) member 1 (AHRD V1 **-* Q0IIA5_BOVIN); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00021796g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|0.5|0.33|3|42|191; (*GB) gi|225448408|ref|XP_002273406.1| (e_value=3e-58) PREDICTED: uncharacterized protein LOC100257064 isoform 1 [Vitis vinifera];; (*TAIR) AT2G40095.1 (e_value=2e-50) | Symbols: | Alpha/beta hydrolase related protein | chr2:16743107-16744455 FORWARD LENGTH=209;; (*ITAG) Solyc05g052750.2.1 (e_value=6e-66) genomic_reference:SL2.40ch05 gene_region:62084392-62086301 transcript_region:SL2.40ch05:62084392..62086301- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KX74_ARALY)"; NbS00026639g0011.1 protein AED:0.27 eAED:0.28 QI:211|1|0.66|1|1|1|3|0|123; (*GB) gi|257222628|gb|ACV52592.1| (e_value=8e-82) thioredoxin H-type 1, partial [Nicotiana benthamiana];; (*SWP) sp|P29449|TRXH1_TOBAC (e_value=1e-80) Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G51030.1 (e_value=7e-59) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc04g080850.2.1 (e_value=3e-70) genomic_reference:SL2.40ch04 gene_region:62514114-62516376 transcript_region:SL2.40ch04:62514114..62516376- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- Q201Z4_9SOLN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00026639g0012.1 protein AED:0.17 eAED:0.19 QI:0|0.87|0.76|1|0.87|0.76|17|0|752; (*GB) gi|255538780|ref|XP_002510455.1| (e_value=0.0) beta-galactosidase, putative [Ricinus communis];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=0.0) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.2 (e_value=0.0) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=855;; (*ITAG) Solyc04g080840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62509584-62513770 transcript_region:SL2.40ch04:62509584..62513770+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B9H4G6_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00021184g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|121; (*GB) gi|224063339|ref|XP_002301104.1| (e_value=9e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXC8|UFC1_ARATH (e_value=3e-76) Ubiquitin-fold modifier-conjugating enzyme 1 OS=Arabidopsis thaliana GN=At1g27530 PE=2 SV=1;; (*TAIR) AT1G27530.1 (e_value=2e-77) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr1:9562761-9563887 REVERSE LENGTH=174;; (*ITAG) Solyc04g076890.2.1 (e_value=3e-80) genomic_reference:SL2.40ch04 gene_region:59417369-59419011 transcript_region:SL2.40ch04:59417369..59419011- go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier-conjugating enzyme 1 (AHRD V1 ***- UFC1_ARATH); contains Interpro domain(s) IPR014806 Ubiquitin-fold modifier-conjugating enzyme 1 "; GO:0005515 NbS00025944g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0|1|1|1|5|0|464; (*GB) gi|255586158|ref|XP_002533739.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc10g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1135018-1137492 transcript_region:SL2.40ch10:1135018..1137492- go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00025944g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0.5|1|0|0.5|2|70|74; (*GB) gi|388507326|gb|AFK41729.1| (e_value=6e-33) unknown [Lotus japonicus];; (*TAIR) AT1G61667.1 (e_value=3e-31) | Symbols: | Protein of unknown function, DUF538 | chr1:22767674-22768269 FORWARD LENGTH=156;; (*ITAG) Solyc10g006590.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1129858-1131392 transcript_region:SL2.40ch10:1129858..1131392- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00025944g0011.1 protein AED:0.37 eAED:0.42 QI:85|1|0.33|1|0.5|0.66|3|32|66; (*GB) gi|224144692|ref|XP_002325378.1| (e_value=3e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT2G16790.2 (e_value=3e-20) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:7284093-7284901 REVERSE LENGTH=187;; (*ITAG) Solyc10g006600.2.1 (e_value=3e-29) genomic_reference:SL2.40ch10 gene_region:1133539-1135307 transcript_region:SL2.40ch10:1133539..1135307+ go_terms:GO:0046316 functional_description:"Thermoresistant gluconokinase (Gluconate kinase) (AHRD V1 **** B0VKT5_ACIBS); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0046316 NbS00038485g0012.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|3|0|207; (*GB) gi|1587206|prf||2206327A (e_value=2e-37) T complex protein;; (*SWP) sp|O04450|TCPE_ARATH (e_value=3e-34) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.2 (e_value=1e-35) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8687660 REVERSE LENGTH=459;; (*ITAG) Solyc05g013990.2.1 (e_value=2e-42) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00038485g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|84|371; (*GB) gi|357156674|ref|XP_003577537.1| (e_value=1e-111) PREDICTED: acetylajmalan esterase-like [Brachypodium distachyon];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=2e-101) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT5G03980.1 (e_value=7e-83) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc12g017460.1.1 (e_value=5e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00038485g0018.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0.5|0.33|3|0|620; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=2e-106) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=2e-107) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00038485g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.55|0.6|0.8|0|0.1|10|581|344; (*GB) gi|356538807|ref|XP_003537892.1| (e_value=3e-107) PREDICTED: uncharacterized protein LOC100802747 [Glycine max];; (*SWP) sp|Q2KIB9|RPP29_BOVIN (e_value=6e-16) Ribonuclease P protein subunit p29 OS=Bos taurus GN=POP4 PE=2 SV=1;; (*TAIR) AT2G43190.2 (e_value=3e-74) | Symbols: | ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=295;; (*ITAG) Solyc09g007370.2.1 (e_value=7e-161) genomic_reference:SL2.40ch09 gene_region:965176-969869 transcript_region:SL2.40ch09:965176..969869- go_terms:GO:0005655,GO:0030677 functional_description:"Ribonuclease P protein subunit p29 (AHRD V1 *-*- C1BL44_OSMMO); contains Interpro domain(s) IPR016848 Ribonuclease P/MRP, p29 subunit, eukaryotic "; GO:0005655,GO:0030677 NbS00028406g0017.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.33|1|0.6|0.5|6|0|869; (*GB) gi|302143945|emb|CBI23050.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LM76|PUB44_ARATH (e_value=5e-46) U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1;; (*TAIR) AT1G20780.1 (e_value=3e-47) | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated E3 ubiquitin ligase 1 | chr1:7217812-7220609 FORWARD LENGTH=801;; (*ITAG) Solyc03g082690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46158633-46163437 transcript_region:SL2.40ch03:46158633..46163437+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00028406g0018.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|1|1|2|0|105; (*GB) gi|351727751|ref|NP_001235124.1| (e_value=1e-62) uncharacterized protein LOC100306443 [Glycine max];; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=6e-58) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=5e-59) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc03g082740.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:46180870-46182205 transcript_region:SL2.40ch03:46180870..46182205+ go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00028406g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|357165637|ref|XP_003580447.1| (e_value=2e-15) PREDICTED: probable WRKY transcription factor 11-like [Brachypodium distachyon];; (*SWP) sp|Q9FLX8|WRK27_ARATH (e_value=1e-15) Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1;; (*TAIR) AT5G52830.1 (e_value=1e-16) | Symbols: WRKY27, ATWRKY27 | WRKY DNA-binding protein 27 | chr5:21410996-21412218 FORWARD LENGTH=348;; (*ITAG) Solyc03g082810.1.1 (e_value=2e-78) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:46218868-46219527 transcript_region:SL2.40ch03:46218868..46219527- go_terms:GO:0045449 functional_description:"Transcription factor WRKY 2 (AHRD V1 *-*- A9RFR5_PHYPA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00028406g0019.1 protein AED:0.08 eAED:0.10 QI:0|0.62|0.44|0.88|0.75|0.55|9|0|845; (*GB) gi|359490721|ref|XP_002275134.2| (e_value=0.0) PREDICTED: oligopeptide transporter 6-like [Vitis vinifera];; (*SWP) sp|Q9T095|OPT6_ARATH (e_value=0.0) Oligopeptide transporter 6 OS=Arabidopsis thaliana GN=OPT6 PE=2 SV=1;; (*TAIR) AT4G27730.1 (e_value=0.0) | Symbols: ATOPT6, OPT6 | oligopeptide transporter 1 | chr4:13834024-13836468 REVERSE LENGTH=736;; (*ITAG) Solyc03g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46163596-46167478 transcript_region:SL2.40ch03:46163596..46167478- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00028406g0020.1 protein AED:0.33 eAED:0.44 QI:0|0.5|0.14|1|0.83|0.71|7|0|273; (*GB) gi|302143942|emb|CBI23047.3| (e_value=2e-84) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21320.1 (e_value=2e-42) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7465200 REVERSE LENGTH=421;; (*ITAG) Solyc03g082710.2.1 (e_value=4e-103) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00045852g0006.1 protein AED:0.12 eAED:0.13 QI:143|1|0.8|1|1|0.8|5|531|525; (*GB) gi|225443247|ref|XP_002272239.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250152 [Vitis vinifera];; (*TAIR) AT1G79710.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:29995137-29996988 FORWARD LENGTH=497;; (*ITAG) Solyc06g068560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38881870-38886874 transcript_region:SL2.40ch06:38881870..38886874- go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B5W6N2_SPIMA); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00045852g0009.1 protein AED:0.24 eAED:0.29 QI:29|0|0|1|0|0.25|4|0|315; (*GB) gi|297842769|ref|XP_002889266.1| (e_value=2e-95) aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=9e-33) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT1G79720.1 (e_value=2e-72) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:29997259-29998951 REVERSE LENGTH=484;; (*ITAG) Solyc03g117690.2.1 (e_value=1e-105) genomic_reference:SL2.40ch03 gene_region:60816760-60818569 transcript_region:SL2.40ch03:60816760..60818569+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA51_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00015086g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|376|340; (*GB) gi|302144236|emb|CBI23474.3| (e_value=6e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G61260.1 (e_value=4e-53) | Symbols: | Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344;; (*ITAG) Solyc03g006620.2.1 (e_value=7e-120) genomic_reference:SL2.40ch03 gene_region:1197406-1198978 transcript_region:SL2.40ch03:1197406..1198978+ functional_description:"Cotton fiber expressed protein 1 (AHRD V1 ***- O81373_GOSHI); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00012590g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.88|1|0.62|0.66|9|526|1274; (*GB) gi|147856644|emb|CAN82462.1| (e_value=0.0) hypothetical protein VITISV_009583 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-29) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT3G46920.1 (e_value=4e-136) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:17280430-17284857 REVERSE LENGTH=1171;; (*ITAG) Solyc07g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1889884-1899241 transcript_region:SL2.40ch07:1889884..1899241- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00000164g0018.1 protein AED:0.11 eAED:0.11 QI:133|1|1|1|0.8|0.66|6|0|321; (*GB) gi|356577710|ref|XP_003556967.1| (e_value=9e-136) PREDICTED: uncharacterized protein LOC100804019 [Glycine max];; (*TAIR) AT5G08540.1 (e_value=8e-125) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2763914-2765431 FORWARD LENGTH=346;; (*ITAG) Solyc02g049070.2.1 (e_value=2e-170) genomic_reference:SL2.40ch02 gene_region:24167233-24181052 transcript_region:SL2.40ch02:24167233..24181052+ functional_description:"Genomic DNA chromosome 5 P1 clone MAH20 (AHRD V1 **-- Q9FNN4_ARATH)"; NbS00000164g0014.1 protein AED:0.12 eAED:0.12 QI:51|0.75|0.4|1|0.5|0.6|5|0|510; (*GB) gi|225463801|ref|XP_002270400.1| (e_value=0.0) PREDICTED: pyruvate kinase, cytosolic isozyme isoform 1 [Vitis vinifera];; (*SWP) sp|Q42806|KPYC_SOYBN (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00000164g0015.1 protein AED:0.17 eAED:0.17 QI:292|1|1|1|1|1|4|323|437; (*GB) gi|255542540|ref|XP_002512333.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=6e-20) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT1G67410.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:25251606-25253568 REVERSE LENGTH=430;; (*ITAG) Solyc04g045650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:34445915-34454418 transcript_region:SL2.40ch04:34445915..34454418+ go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 **-- D7KV31_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00000164g0017.1 protein AED:0.67 eAED:0.67 QI:312|0.66|0.5|1|0.33|0.25|4|0|359; (*GB) gi|225425476|ref|XP_002272745.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At1g67480 [Vitis vinifera];; (*SWP) sp|Q9CAG8|FBK28_ARATH (e_value=1e-159) F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1;; (*TAIR) AT1G67480.2 (e_value=8e-161) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:25277294-25278529 FORWARD LENGTH=376;; (*ITAG) Solyc02g021600.1.1 (e_value=9e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13959590-13960798 transcript_region:SL2.40ch02:13959590..13960798+ functional_description:"Kelch-like protein 14 (AHRD V1 *-*- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00006906g0005.1 protein AED:0.21 eAED:0.35 QI:0|0|0|0.66|0.5|0.33|3|0|239; (*ITAG) Solyc04g082080.1.1 (e_value=5e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:63456081-63457289 transcript_region:SL2.40ch04:63456081..63457289- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00006906g0003.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|73 NbS00006906g0004.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|93; (*ITAG) Solyc04g082080.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:63456081-63457289 transcript_region:SL2.40ch04:63456081..63457289- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00001476g0016.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|0.5|1|1|2|149|265; (*ITAG) Solyc05g013840.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:7222627-7223401 transcript_region:SL2.40ch05:7222627..7223401- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00001476g0008.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|110; (*ITAG) Solyc00g022070.1.1 (e_value=2e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12007281-12007518 transcript_region:SL2.40ch00:12007281..12007518+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001476g0014.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|110; (*ITAG) Solyc08g044370.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001476g0018.1 protein AED:0.07 eAED:0.14 QI:86|0.33|0.28|0.85|0.33|0.28|7|0|833; (*GB) gi|297831090|ref|XP_002883427.1| (e_value=5e-41) nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G23370.1 (e_value=7e-42) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:8357613-8360792 FORWARD LENGTH=811;; (*ITAG) Solyc09g090290.2.1 (e_value=2e-138) genomic_reference:SL2.40ch09 gene_region:65163696-65170418 transcript_region:SL2.40ch09:65163696..65170418+ functional_description:"Genomic DNA chromosome 3 P1 clone MLM24 (AHRD V1 *--- Q9LW59_ARATH)"; NbS00034016g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|2981169|gb|AAC06243.1| (e_value=4e-152) osmotic stress-induced zinc-finger protein [Nicotiana tabacum];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=2e-52) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=1e-53) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc01g107170.2.1 (e_value=2e-90) genomic_reference:SL2.40ch01 gene_region:86548794-86550092 transcript_region:SL2.40ch01:86548794..86550092+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc finger protein (AHRD V1 ***- A0T3Q5_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00052498g0001.1 protein AED:0.16 eAED:0.16 QI:178|0.5|0.66|1|0|0.33|3|0|274; (*GB) gi|255548772|ref|XP_002515442.1| (e_value=6e-178) ccr4-associated factor, putative [Ricinus communis];; (*SWP) sp|Q9SKZ2|CAF1G_ARATH (e_value=4e-160) Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2;; (*TAIR) AT2G32070.1 (e_value=3e-161) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275;; (*ITAG) Solyc11g045130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36710104-36710928 transcript_region:SL2.40ch11:36710104..36710928+ go_terms:GO:0003676,GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0003676,GO:0005634 NbS00052498g0007.1 protein AED:0.32 eAED:0.36 QI:0|0.33|0.14|0.85|0.33|0.42|7|0|559; (*GB) gi|225460012|ref|XP_002271455.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249908 [Vitis vinifera];; (*SWP) sp|O59729|SLPI_SCHPO (e_value=2e-37) Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slp1 PE=2 SV=1;; (*TAIR) AT1G71360.1 (e_value=7e-139) | Symbols: | Galactose-binding protein | chr1:26892214-26894166 REVERSE LENGTH=596;; (*ITAG) Solyc08g082540.2.1 (e_value=2e-112) genomic_reference:SL2.40ch08 gene_region:62459474-62464300 transcript_region:SL2.40ch08:62459474..62464300+ functional_description:"Sad1/UNC domain protein (AHRD V1 *--- D4DCK4_TRIVH); contains Interpro domain(s) IPR012919 Sad1/UNC-like, C-terminal "; NbC24014927g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|58 NbS00027843g0019.1 protein AED:0.06 eAED:0.06 QI:83|1|1|1|1|1|10|292|280; (*GB) gi|68299229|emb|CAJ13715.1| (e_value=1e-171) putative replication factor A [Capsicum chinense];; (*SWP) sp|Q92373|RFA2_SCHPO (e_value=8e-26) Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb2 PE=1 SV=1;; (*TAIR) AT3G02920.1 (e_value=7e-87) | Symbols: RPA32B, ATRPA32B | Replication protein A, subunit RPA32 | chr3:651844-654189 REVERSE LENGTH=278;; (*ITAG) Solyc10g081830.1.1 (e_value=8e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62125511-62129586 transcript_region:SL2.40ch10:62125511..62129586+ go_terms:GO:0003676 functional_description:"Replication protein A subunit (AHRD V1 ***- B6T3L8_MAIZE); contains Interpro domain(s) IPR014646 Replication protein A, subunit RPA32 "; GO:0003676 NbS00027843g0005.1 protein AED:0.14 eAED:0.14 QI:25|1|0.8|1|0|0.2|5|2196|360; (*GB) gi|147857775|emb|CAN80799.1| (e_value=1e-168) hypothetical protein VITISV_019809 [Vitis vinifera];; (*SWP) sp|Q9LSL9|PP445_ARATH (e_value=8e-149) Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1;; (*TAIR) AT5G65560.1 (e_value=6e-150) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:26201012-26203759 REVERSE LENGTH=915;; (*ITAG) Solyc10g081880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62143415-62146156 transcript_region:SL2.40ch10:62143415..62146156- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027843g0011.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.5|0.66|3|0|243; (*GB) gi|88683134|emb|CAJ77501.1| (e_value=3e-148) expp1 protein precursor [Solanum tuberosum];; (*TAIR) AT3G44150.1 (e_value=5e-125) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15887617-15888728 FORWARD LENGTH=246;; (*ITAG) Solyc10g081820.1.1 (e_value=4e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62119410-62124645 transcript_region:SL2.40ch10:62119410..62124645+ functional_description:"Expp1 protein (AHRD V1 ***- Q2HPL4_SOLTU)"; NbS00027843g0014.1 protein AED:0.20 eAED:0.20 QI:507|1|0.8|1|1|1|5|428|290; (*GB) gi|225463280|ref|XP_002263793.1| (e_value=3e-75) PREDICTED: nuclear transcription factor Y subunit A-10-like [Vitis vinifera];; (*SWP) sp|Q8LFU0|NFYAA_ARATH (e_value=9e-38) Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2;; (*TAIR) AT5G06510.2 (e_value=7e-39) | Symbols: NF-YA10 | nuclear factor Y, subunit A10 | chr5:1985439-1986591 FORWARD LENGTH=269;; (*ITAG) Solyc01g006930.2.1 (e_value=4e-105) genomic_reference:SL2.40ch01 gene_region:1506539-1511917 transcript_region:SL2.40ch01:1506539..1511917+ go_terms:GO:0003700,GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-2 (AHRD V1 **** B6SM21_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700,GO:0016566 NbS00027843g0012.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|1|4|0|520; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-75) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=7e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00017056g0010.1 protein AED:0.40 eAED:0.40 QI:0|1|1|1|1|1|4|619|214; (*GB) gi|297744763|emb|CBI38025.3| (e_value=6e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6P949|PHF2_DANRE (e_value=5e-11) Lysine-specific demethylase phf2 OS=Danio rerio GN=phf2 PE=2 SV=3;; (*TAIR) AT4G39100.1 (e_value=8e-113) | Symbols: SHL1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:18218298-18220134 REVERSE LENGTH=228;; (*ITAG) Solyc01g110020.2.1 (e_value=1e-149) genomic_reference:SL2.40ch01 gene_region:88598046-88604435 transcript_region:SL2.40ch01:88598046..88604435+ go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00017056g0009.1 protein AED:0.17 eAED:0.17 QI:656|1|0.88|1|0.87|0.77|9|44|471; (*GB) gi|27597229|dbj|BAC55155.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SDZ9|PPAF2_IPOBA (e_value=0.0) Purple acid phosphatase 2 OS=Ipomoea batatas GN=PAP2 PE=1 SV=1;; (*TAIR) AT2G16430.2 (e_value=0.0) | Symbols: PAP10, ATPAP10 | purple acid phosphatase 10 | chr2:7120502-7122772 REVERSE LENGTH=468;; (*ITAG) Solyc01g110060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88618467-88622227 transcript_region:SL2.40ch01:88618467..88622227- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** Q84KZ2_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00017056g0012.1 protein AED:0.22 eAED:0.22 QI:297|0.90|0.83|1|0.72|0.83|12|288|486; (*GB) gi|225427694|ref|XP_002274240.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q6DKP5|WDR13_PANTR (e_value=2e-60) WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3 SV=1;; (*TAIR) AT2G16405.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:7105915-7108787 REVERSE LENGTH=482;; (*ITAG) Solyc01g110030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88604505-88612650 transcript_region:SL2.40ch01:88604505..88612650- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IVX2_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00018731g0019.1 protein AED:0.18 eAED:0.18 QI:1732|0.86|0.93|1|0.46|0.5|16|298|325; (*GB) gi|350539878|ref|NP_001234560.1| (e_value=0.0) putative peptide:N-glycanase [Solanum lycopersicum];; (*SWP) sp|Q9FGY9|PNG1_ARATH (e_value=5e-113) Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1;; (*TAIR) AT5G49570.1 (e_value=4e-114) | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | chr5:20112071-20116125 REVERSE LENGTH=721;; (*ITAG) Solyc01g097440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80052053-80066257 transcript_region:SL2.40ch01:80052053..80066257+ go_terms:GO:0000224 functional_description:"Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (AHRD V1 **-* PNG1_ARATH); contains Interpro domain(s) IPR002931 Transglutaminase-like "; GO:0000224 NbS00018731g0012.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|4|0|122; (*GB) gi|297735833|emb|CBI18553.3| (e_value=6e-13) unnamed protein product [Vitis vinifera]; NbS00018731g0017.1 protein AED:0.40 eAED:0.72 QI:0|0|0|1|1|0.66|3|0|141 NbS00018731g0020.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|0.28|0.25|8|0|868; (*GB) gi|255542302|ref|XP_002512214.1| (e_value=0.0) cation-transporting atpase plant, putative [Ricinus communis];; (*SWP) sp|Q9LIK7|ACA13_ARATH (e_value=0.0) Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=2 SV=1;; (*TAIR) AT3G22910.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:8116335-8119388 REVERSE LENGTH=1017;; (*ITAG) Solyc07g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00018731g0021.1 protein AED:0.10 eAED:0.10 QI:0|0.25|0.2|1|0.5|0.6|5|899|430; (*GB) gi|224121142|ref|XP_002318509.1| (e_value=3e-173) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9M2V7|AB16G_ARATH (e_value=5e-71) ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2;; (*TAIR) AT3G55090.1 (e_value=4e-72) | Symbols: | ABC-2 type transporter family protein | chr3:20416342-20418552 REVERSE LENGTH=736;; (*ITAG) Solyc01g097430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80046125-80049268 transcript_region:SL2.40ch01:80046125..80049268- go_terms:GO:0042803 functional_description:"ABC transporter G family member 2 (AHRD V1 *-*- AB2G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042803 NbS00045703g0005.1 protein AED:0.06 eAED:0.06 QI:151|1|0.5|1|0|0|2|37|21 NbS00052330g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|359485444|ref|XP_002276750.2| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100245463 [Vitis vinifera];; (*TAIR) AT2G30990.3 (e_value=2e-17) | Symbols: | Protein of unknown function (DUF688) | chr2:13187776-13189761 REVERSE LENGTH=563;; (*ITAG) Solyc12g013960.1.1 (e_value=2e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4785891-4788385 transcript_region:SL2.40ch12:4785891..4788385- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00029440g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|601; (*GB) gi|147856802|emb|CAN79178.1| (e_value=2e-85) hypothetical protein VITISV_016729 [Vitis vinifera];; (*SWP) sp|Q9SS80|U503A_ARATH (e_value=6e-29) UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1;; (*TAIR) AT2G38070.1 (e_value=1e-37) | Symbols: | Protein of unknown function (DUF740) | chr2:15928737-15930596 FORWARD LENGTH=619;; (*ITAG) Solyc06g076700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44014596-44016497 transcript_region:SL2.40ch06:44014596..44016497+ functional_description:"UPF0503 protein At3g09070, chloroplastic (AHRD V1 *-*- U503A_ARATH); contains Interpro domain(s) IPR008004 Protein of unknown function DUF740 "; NbS00013740g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.85|1|0.5|0.71|7|466|235; (*GB) gi|218744593|dbj|BAH03515.1| (e_value=5e-64) centromere specific histone H3 variant [Nicotiana tabacum];; (*SWP) sp|Q8RVQ9|HTR12_ARATH (e_value=7e-42) Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=1 SV=3;; (*TAIR) AT1G01370.2 (e_value=5e-43) | Symbols: HTR12, CENH3 | Histone superfamily protein | chr1:143773-145400 FORWARD LENGTH=178;; (*ITAG) Solyc01g095650.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:78618500-78623890 transcript_region:SL2.40ch01:78618500..78623890- go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- B7XEI9_NICTO); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00013740g0006.1 protein AED:0.02 eAED:0.02 QI:64|1|1|1|0.5|0.66|3|274|88; (*GB) gi|380006413|gb|AFD29597.1| (e_value=1e-36) caprice [Gossypium arboreum];; (*SWP) sp|Q8GV05|TRY_ARATH (e_value=7e-33) Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1;; (*TAIR) AT5G53200.1 (e_value=5e-34) | Symbols: TRY | Homeodomain-like superfamily protein | chr5:21582913-21583960 FORWARD LENGTH=106;; (*ITAG) Solyc01g095640.1.1 (e_value=6e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:78616587-78617431 transcript_region:SL2.40ch01:78616587..78617431- go_terms:GO:0005515,GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** D7LC50_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00025541g0006.1 protein AED:0.09 eAED:0.09 QI:361|1|1|1|0.5|0.66|3|176|383; (*GB) gi|225438988|ref|XP_002279597.1| (e_value=3e-130) PREDICTED: probable glucan endo-1,3-beta-glucosidase A6-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=7e-32) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT5G67460.1 (e_value=1e-85) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:26921984-26923274 REVERSE LENGTH=380;; (*ITAG) Solyc12g008580.1.1 (e_value=6e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1968665-1973480 transcript_region:SL2.40ch12:1968665..1973480+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 ***- B6TCY1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00025541g0007.1 protein AED:0.01 eAED:0.01 QI:63|1|0.5|1|0|0|2|0|35 NbS00025541g0009.1 protein AED:0.45 eAED:0.55 QI:20|0|0.33|1|1|1|3|20|102; (*ITAG) Solyc03g044080.2.1 (e_value=2e-17) genomic_reference:SL2.40ch03 gene_region:11887806-11899902 transcript_region:SL2.40ch03:11887806..11899902- functional_description:"Unknown Protein (AHRD V1)"; NbS00045117g0007.1 protein AED:0.19 eAED:0.19 QI:24|0|0|0.5|0.33|0.5|4|0|308; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-60) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00045117g0006.1 protein AED:0.27 eAED:0.27 QI:42|0.90|0.91|1|0.63|0.58|12|417|356; (*GB) gi|225448605|ref|XP_002278805.1| (e_value=3e-126) PREDICTED: uncharacterized protein At2g40430 [Vitis vinifera];; (*SWP) sp|O22892|GSR2_ARATH (e_value=2e-54) Uncharacterized protein At2g40430 OS=Arabidopsis thaliana GN=At2g40430 PE=1 SV=2;; (*TAIR) AT2G40430.3 (e_value=1e-55) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tumour suppressor protein Gltscr2 (InterPro:IPR011211), P60-like (InterPro:IPR011687). | chr2:16879466-16882365 REVERSE LENGTH=441;; (*ITAG) Solyc02g068420.2.1 (e_value=4e-171) genomic_reference:SL2.40ch02 gene_region:32948141-32958285 transcript_region:SL2.40ch02:32948141..32958285- functional_description:"Glioma tumor suppressor candidate region gene 2 (AHRD V1 **-- Q6QLN3_RAT); contains Interpro domain(s) IPR011211 Tumor suppressor protein Gltscr2 "; NbS00006457g0006.1 protein AED:0.14 eAED:0.14 QI:123|0.83|0.76|1|0.91|0.92|13|0|646; (*GB) gi|224065468|ref|XP_002301825.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G48460.1 (e_value=0.0) | Symbols: | Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654;; (*ITAG) Solyc09g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:42810385-42818686 transcript_region:SL2.40ch09:42810385..42818686+ go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00027045g0003.1 protein AED:0.20 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|600; (*GB) gi|356551940|ref|XP_003544330.1| (e_value=0.0) PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max];; (*SWP) sp|Q6MC06|SYY_PARUW (e_value=9e-152) Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1;; (*TAIR) AT3G02660.1 (e_value=0.0) | Symbols: emb2768 | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr3:570221-571756 REVERSE LENGTH=511;; (*ITAG) Solyc07g008530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:3458554-3460119 transcript_region:SL2.40ch07:3458554..3460119+ go_terms:GO:0042802 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 ***- A4RSR2_OSTLU); contains Interpro domain(s) IPR002307 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "; GO:0042802 NbS00027045g0010.1 protein AED:0.17 eAED:0.17 QI:139|0.85|0.75|1|0.71|0.87|8|0|262; (*GB) gi|255575537|ref|XP_002528669.1| (e_value=9e-127) set domain protein, putative [Ricinus communis];; (*SWP) sp|Q84WW6|ASHH1_ARATH (e_value=5e-119) Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=2 SV=1;; (*TAIR) AT1G76710.2 (e_value=4e-120) | Symbols: ASHH1 | SET domain group 26 | chr1:28789887-28792371 REVERSE LENGTH=492;; (*ITAG) Solyc07g008460.2.1 (e_value=3e-161) genomic_reference:SL2.40ch07 gene_region:3363412-3374716 transcript_region:SL2.40ch07:3363412..3374716+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00045800g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|1|1|-1|1|1|0|104; (*GB) gi|229914874|gb|ACQ90599.1| (e_value=1e-56) putative NADH dehydrogenase [Eutrema halophilum];; (*SWP) sp|Q9SKC9|NDUB7_ARATH (e_value=7e-55) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=2 SV=1;; (*TAIR) AT2G02050.1 (e_value=5e-56) | Symbols: | NADH-ubiquinone oxidoreductase B18 subunit, putative | chr2:490024-490335 FORWARD LENGTH=103;; (*ITAG) Solyc04g008490.1.1 (e_value=8e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2117997-2118299 transcript_region:SL2.40ch04:2117997..2118299- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB7_DICDI); contains Interpro domain(s) IPR008698 NADH:ubiquinone oxidoreductase, B18 subunit "; GO:0008137 NbS00058567g0003.1 protein AED:0.01 eAED:0.01 QI:133|0.83|0.71|1|0.66|0.71|7|339|270; (*GB) gi|225464442|ref|XP_002265373.1| (e_value=2e-107) PREDICTED: probable alpha-ketoglutarate-dependent dioxygenase ABH6 [Vitis vinifera];; (*SWP) sp|Q5PQ59|ALKB6_XENLA (e_value=2e-41) Probable alpha-ketoglutarate-dependent dioxygenase ABH6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1;; (*TAIR) AT4G20350.2 (e_value=5e-95) | Symbols: | oxidoreductases | chr4:10988391-10989733 FORWARD LENGTH=241;; (*ITAG) Solyc01g057570.2.1 (e_value=2e-150) genomic_reference:SL2.40ch01 gene_region:54781362-54788776 transcript_region:SL2.40ch01:54781362..54788776+ go_terms:GO:0005515,GO:0010302 functional_description:"Alkylated DNA repair protein alkB (AHRD V1 **-- D0NI62_PHYIN)"; GO:0005515,GO:0010302 NbS00028759g0012.1 protein AED:0.05 eAED:0.06 QI:0|0.8|0.5|0.83|0.8|0.83|6|0|979; (*GB) gi|356517883|ref|XP_003527615.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100815079 [Glycine max];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=8e-167) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=6e-168) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46217108-46227554 transcript_region:SL2.40ch11:46217108..46227554+ go_terms:GO:0005634,GO:0008270 functional_description:"Novel protein containing a PHD-finger domain (Fragment) (AHRD V1 *--- Q07G27_XENTR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00028759g0010.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.42|1|0.33|0.57|7|0|1252; (*GB) gi|359478743|ref|XP_002282912.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=0.0) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc11g062240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46229703-46231982 transcript_region:SL2.40ch11:46229703..46231982+ functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; NbS00028759g0011.1 protein AED:0.50 eAED:0.50 QI:0|0.5|0|0.66|1|1|3|0|150; (*GB) gi|224080432|ref|XP_002306134.1| (e_value=7e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=4e-22) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=3e-23) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062240.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46229703-46231982 transcript_region:SL2.40ch11:46229703..46231982+ functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; NbS00028759g0009.1 protein AED:0.74 eAED:0.89 QI:56|0|0|1|0|0.5|2|52|17 NbS00015965g0006.1 protein AED:0.23 eAED:0.24 QI:0|0.92|0.89|0.96|0.85|0.85|28|661|1051; (*GB) gi|225439303|ref|XP_002267555.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.2 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1115;; (*ITAG) Solyc10g081610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00022340g0002.1 protein AED:0.62 eAED:0.66 QI:0|0.5|0|1|0|0|3|0|101; (*GB) gi|225437006|ref|XP_002272499.1| (e_value=2e-45) PREDICTED: preprotein translocase subunit secY-like [Vitis vinifera];; (*SWP) sp|F4IQV7|SCY2_ARATH (e_value=8e-37) Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1;; (*TAIR) AT2G31530.1 (e_value=6e-38) | Symbols: EMB2289, SCY2 | SecY protein transport family protein | chr2:13427060-13430308 FORWARD LENGTH=575;; (*ITAG) Solyc09g065120.2.1 (e_value=2e-51) genomic_reference:SL2.40ch09 gene_region:58581273-58591924 transcript_region:SL2.40ch09:58581273..58591924- go_terms:GO:0006508,GO:0016020 functional_description:"Preprotein translocase secY subunit (AHRD V1 ***- B6U7Q0_MAIZE); contains Interpro domain(s) IPR002208 SecY protein "; GO:0006508,GO:0016020 NbS00019286g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.66|1|1|3|0|284; (*GB) gi|359474353|ref|XP_002265516.2| (e_value=4e-78) PREDICTED: uncharacterized protein LOC100257409 [Vitis vinifera];; (*TAIR) AT1G62520.1 (e_value=2e-56) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits to 388 proteins in 26 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:23144506-23145348 FORWARD LENGTH=280;; (*ITAG) Solyc08g079010.1.1 (e_value=7e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59828334-59828810 transcript_region:SL2.40ch08:59828334..59828810+ functional_description:"Os04g0690100 protein (Fragment) (AHRD V1 ***- Q0J8S4_ORYSJ)"; NbS00019286g0006.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.2|0.6|0.75|1|5|0|165; (*GB) gi|357481985|ref|XP_003611278.1| (e_value=6e-98) Adenine phosphoribosyltransferase-like protein [Medicago truncatula];; (*SWP) sp|P31166|APT1_ARATH (e_value=5e-90) Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2;; (*TAIR) AT4G22570.1 (e_value=2e-95) | Symbols: APT3 | adenine phosphoribosyl transferase 3 | chr4:11882310-11885250 REVERSE LENGTH=183;; (*ITAG) Solyc08g079020.2.1 (e_value=8e-111) genomic_reference:SL2.40ch08 gene_region:59830669-59836240 transcript_region:SL2.40ch08:59830669..59836240- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like protein (AHRD V1 **** Q8LG17_ARATH); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00008871g0007.1 protein AED:0.21 eAED:0.21 QI:59|0.5|0.33|1|0.5|0.66|3|0|218; (*GB) gi|350535843|ref|NP_001234472.1| (e_value=2e-119) xyloglucan endotransglucosylase-hydrolase XTH3 precursor [Solanum lycopersicum];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=9e-95) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G30270.1 (e_value=1e-94) | Symbols: MERI5B, MERI-5, XTH24, SEN4 | xyloglucan endotransglucosylase/hydrolase 24 | chr4:14819445-14820448 REVERSE LENGTH=269;; (*ITAG) Solyc03g093080.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:47714082-47715297 transcript_region:SL2.40ch03:47714082..47715297- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 **** C0IRG8_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00008871g0004.1 protein AED:0.10 eAED:0.10 QI:48|0.33|0.25|0.75|1|1|4|0|243; (*GB) gi|350535843|ref|NP_001234472.1| (e_value=3e-133) xyloglucan endotransglucosylase-hydrolase XTH3 precursor [Solanum lycopersicum];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=2e-108) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G25810.1 (e_value=2e-109) | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286;; (*ITAG) Solyc03g093080.2.1 (e_value=1e-136) genomic_reference:SL2.40ch03 gene_region:47714082-47715297 transcript_region:SL2.40ch03:47714082..47715297- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 **** C0IRG8_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00029699g0011.1 protein AED:0.05 eAED:0.05 QI:86|1|1|1|1|1|2|128|218; (*GB) gi|225447031|ref|XP_002269347.1| (e_value=3e-106) PREDICTED: putative germin-like protein 2-1 [Vitis vinifera];; (*SWP) sp|Q6K5Q0|GL21_ORYSJ (e_value=3e-96) Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1;; (*TAIR) AT3G05950.1 (e_value=6e-81) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc10g078840.1.1 (e_value=2e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00029699g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-44) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g050450.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:46388272-46390482 transcript_region:SL2.40ch04:46388272..46390482- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00029699g0010.1 protein AED:0.31 eAED:0.31 QI:186|0.75|0.8|1|0.5|0.6|5|298|259; (*GB) gi|357449021|ref|XP_003594786.1| (e_value=9e-117) Phosducin-like protein [Medicago truncatula];; (*SWP) sp|Q8MR62|VIAF1_DROME (e_value=2e-33) Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1;; (*TAIR) AT5G14240.1 (e_value=2e-104) | Symbols: | Thioredoxin superfamily protein | chr5:4596223-4597568 REVERSE LENGTH=256;; (*ITAG) Solyc10g078830.1.1 (e_value=3e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59847571-59851518 transcript_region:SL2.40ch10:59847571..59851518+ functional_description:"Phosducin-like protein 3 (AHRD V1 ***- B4FF90_MAIZE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00029699g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|377; (*GB) gi|296088367|emb|CBI36812.3| (e_value=1e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6K5P8|GL23_ORYSJ (e_value=7e-75) Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1;; (*TAIR) AT3G05950.1 (e_value=2e-64) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc10g078840.1.1 (e_value=2e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00031193g0002.1 protein AED:0.07 eAED:0.12 QI:0|0|0|1|1|1|2|0|111; (*ITAG) Solyc09g082930.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64012666-64012998 transcript_region:SL2.40ch09:64012666..64012998- functional_description:"Unknown Protein (AHRD V1)"; NbS00051336g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|197; (*GB) gi|388499842|gb|AFK37987.1| (e_value=1e-42) unknown [Lotus japonicus];; (*TAIR) AT3G05980.1 (e_value=2e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:1795514-1796251 FORWARD LENGTH=245;; (*ITAG) Solyc06g054280.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33583731-33584426 transcript_region:SL2.40ch06:33583731..33584426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051011g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|357514669|ref|XP_003627623.1| (e_value=3e-69) hypothetical protein MTR_8g032260 [Medicago truncatula];; (*TAIR) AT4G23890.1 (e_value=3e-69) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:12420593-12421345 REVERSE LENGTH=250;; (*ITAG) Solyc08g082400.1.1 (e_value=8e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62383099-62383851 transcript_region:SL2.40ch08:62383099..62383851- functional_description:"Genome sequencing data contig C313 (AHRD V1 *-*- A8YHF7_MICAE)"; NbS00012215g0007.1 protein AED:0.18 eAED:0.21 QI:24|0.7|0.90|1|0.6|0.54|11|33|445; (*GB) gi|225434263|ref|XP_002280697.1| (e_value=3e-174) PREDICTED: mildew resistance locus o 15 [Vitis vinifera];; (*SWP) sp|O49621|MLO1_ARATH (e_value=4e-152) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=3e-153) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc08g015870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6074040-6078983 transcript_region:SL2.40ch08:6074040..6078983- go_terms:GO:0016021 functional_description:"MLO-like protein 7 (AHRD V1 ***- C6EWE8_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00012215g0006.1 protein AED:0.15 eAED:0.15 QI:343|1|1|1|1|1|13|434|444; (*GB) gi|2501850|gb|AAB80717.1| (e_value=0.0) GDP dissociation inhibitor [Nicotiana tabacum];; (*SWP) sp|P21856|GDIA_BOVIN (e_value=0.0) Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G59920.1 (e_value=0.0) | Symbols: ATGDI2, GDI2 | RAB GDP dissociation inhibitor 2 | chr3:22135157-22138221 FORWARD LENGTH=444;; (*ITAG) Solyc08g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6067525-6073836 transcript_region:SL2.40ch08:6067525..6073836+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab GDP dissociation inhibitor (AHRD V1 **** C0LSK7_NICBE); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00039816g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.87|0.77|1|1|1|9|0|440; (*GB) gi|2506931|sp|P80595.2|APY_SOLTU (e_value=0.0) RecName: Full=Apyrase; AltName: Full=ATP-diphosphatase; AltName: Full=ATP-diphosphohydrolase; AltName: Full=Adenosine diphosphatase; Short=ADPase; Flags: Precursor;; (*SWP) sp|P80595|APY_SOLTU (e_value=0.0) Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2;; (*TAIR) AT5G18280.1 (e_value=2e-117) | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578;; (*ITAG) Solyc12g098540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64350912-64356556 transcript_region:SL2.40ch12:64350912..64356556- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00039816g0003.1 protein AED:0.14 eAED:0.15 QI:0|0.8|0.83|1|1|1|6|0|257; (*GB) gi|225463339|ref|XP_002269192.1| (e_value=4e-98) PREDICTED: histidine protein methyltransferase 1 homolog [Vitis vinifera];; (*SWP) sp|Q55DL2|MET18_DICDI (e_value=8e-37) Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1;; (*TAIR) AT4G14000.1 (e_value=5e-94) | Symbols: | Putative methyltransferase family protein | chr4:8090851-8092347 FORWARD LENGTH=290;; (*ITAG) Solyc12g098530.1.1 (e_value=3e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64345485-64348979 transcript_region:SL2.40ch12:64345485..64348979- functional_description:"GM16957 (Fragment) (AHRD V1 *--- B4IQH2_DROSE); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00010405g0015.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.33|1|1|3|0|313; (*GB) gi|6177892|dbj|BAA86070.1| (e_value=6e-147) Phospate transpoter [Nicotiana tabacum];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=2e-128) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=2e-129) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc09g090070.1.1 (e_value=7e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00010405g0017.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.5|0.5|1|1|4|598|82 NbS00047228g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.73|0.68|0.93|0.86|0.81|16|0|1132; (*GB) gi|255556001|ref|XP_002519035.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G04920.1 (e_value=0.0) | Symbols: SFR6 | sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1278;; (*ITAG) Solyc02g078520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37750390-37767841 transcript_region:SL2.40ch02:37750390..37767841- functional_description:"Unknown Protein (AHRD V1)"; NbS00006960g0004.1 protein AED:0.07 eAED:0.07 QI:277|0.88|0.7|1|0.77|0.8|10|200|604; (*GB) gi|283131196|dbj|BAI63261.1| (e_value=0.0) trehalase [Nicotiana tabacum];; (*SWP) sp|Q9FWC1|TRE_ORYSJ (e_value=0.0) Probable trehalase OS=Oryza sativa subsp. japonica GN=Os10g0521000 PE=2 SV=1;; (*TAIR) AT4G24040.1 (e_value=0.0) | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:12488242-12491060 FORWARD LENGTH=626;; (*ITAG) Solyc08g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62687027-62692382 transcript_region:SL2.40ch08:62687027..62692382+ go_terms:GO:0004555 functional_description:"Alpha alpha-trehalase (AHRD V1 **** Q16V80_AEDAE); contains Interpro domain(s) IPR001661 Glycoside hydrolase, family 37 "; GO:0004555 NbS00010130g0011.1 protein AED:0.12 eAED:0.12 QI:223|1|1|1|0.75|0.77|9|234|255; (*GB) gi|359475952|ref|XP_002277697.2| (e_value=2e-106) PREDICTED: uncharacterized protein LOC100245843 [Vitis vinifera];; (*TAIR) AT3G18380.1 (e_value=1e-67) | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=348;; (*ITAG) Solyc08g066390.2.1 (e_value=8e-155) genomic_reference:SL2.40ch08 gene_region:52209116-52215073 transcript_region:SL2.40ch08:52209116..52215073+ functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 ***- Q0DC52_ORYSJ)"; NbS00010130g0003.1 protein AED:0.08 eAED:0.09 QI:380|1|0.93|1|0.93|0.87|16|441|748; (*GB) gi|359475913|ref|XP_002272679.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254265 [Vitis vinifera];; (*SWP) sp|P40234|CKI2_SCHPO (e_value=5e-59) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2;; (*TAIR) AT2G25760.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr2:10985118-10988652 REVERSE LENGTH=673;; (*ITAG) Solyc12g095830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63287600-63291851 transcript_region:SL2.40ch12:63287600..63291851+ go_terms:GO:0006468 functional_description:"Casein kinase I (AHRD V1 ***- D8V7I8_SESIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010130g0009.1 protein AED:0.61 eAED:0.90 QI:0|0|0|0.66|0|0|3|0|136 NbS00038314g0011.1 protein AED:0.03 eAED:0.03 QI:0|0.33|0|1|0|0|4|0|960; (*GB) gi|296089594|emb|CBI39413.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=3e-156) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT3G23750.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:8558332-8561263 FORWARD LENGTH=928;; (*ITAG) Solyc09g057680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45731275-45734629 transcript_region:SL2.40ch09:45731275..45734629+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00038314g0007.1 protein AED:0.41 eAED:0.55 QI:0|0.66|0.71|1|0.83|0.71|7|293|178; (*GB) gi|225469328|ref|XP_002271056.1| (e_value=4e-65) PREDICTED: FK506-binding protein 2-1 [Vitis vinifera];; (*SWP) sp|Q41649|FKB15_VICFA (e_value=6e-62) FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1;; (*TAIR) AT3G25220.1 (e_value=3e-62) | Symbols: FKBP15-1 | FK506-binding protein 15 kD-1 | chr3:9182691-9184463 FORWARD LENGTH=153;; (*ITAG) Solyc09g057670.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:45726675-45731083 transcript_region:SL2.40ch09:45726675..45731083- go_terms:GO:0005528 functional_description:"FK506-binding protein 2 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 **-* C8VE36_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00038314g0006.1 protein AED:0.64 eAED:0.64 QI:0|0.5|0.33|0.66|1|1|3|0|96 NbS00053725g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.88|1|0.75|0.88|9|147|373; (*GB) gi|225459983|ref|XP_002267634.1| (e_value=3e-156) PREDICTED: uncharacterized protein LOC100251767 [Vitis vinifera];; (*TAIR) AT1G71340.1 (e_value=5e-131) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:26885556-26887321 REVERSE LENGTH=328;; (*ITAG) Solyc11g045050.1.1 (e_value=3e-87) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36566386-36570365 transcript_region:SL2.40ch11:36566386..36570365- go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7KYU8_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0006629,GO:0006071 NbS00053725g0006.1 protein AED:0.32 eAED:0.33 QI:410|1|0.6|1|0.5|0.8|5|0|200; (*GB) gi|255561476|ref|XP_002521748.1| (e_value=2e-79) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G10140.1 (e_value=1e-76) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6322538-6324421 FORWARD LENGTH=183;; (*ITAG) Solyc11g045030.1.1 (e_value=9e-102) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36544957-36552164 transcript_region:SL2.40ch11:36544957..36552164+ functional_description:"Cytoplasmic membrane protein (AHRD V1 *-*- B6TYL5_MAIZE)"; NbS00010020g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|224143672|ref|XP_002325036.1| (e_value=6e-12) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g017870.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8217546-8219267 transcript_region:SL2.40ch07:8217546..8219267- functional_description:"Genomic DNA chromosome 5 P1 clone MJB24 (AHRD V1 *-*- Q9LVC4_ARATH)"; NbS00010020g0007.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0.5|1|0|0|4|607|435; (*GB) gi|255550231|ref|XP_002516166.1| (e_value=1e-154) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G21970.1 (e_value=2e-145) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:7262071-7263420 FORWARD LENGTH=449;; (*ITAG) Solyc01g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71010601-71012028 transcript_region:SL2.40ch01:71010601..71012028- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00057125g0003.1 protein AED:0.27 eAED:0.27 QI:284|1|0.75|1|0.85|0.75|8|0|640; (*GB) gi|147770817|emb|CAN63166.1| (e_value=0.0) hypothetical protein VITISV_040077 [Vitis vinifera];; (*SWP) sp|Q940J9|PMT8_ARATH (e_value=0.0) Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1;; (*TAIR) AT1G04430.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623;; (*ITAG) Solyc09g090190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65089763-65093797 transcript_region:SL2.40ch09:65089763..65093797+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00038793g0006.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0|1|1|1|4|0|165; (*GB) gi|225440678|ref|XP_002280036.1| (e_value=3e-59) PREDICTED: uncharacterized protein LOC100261401 isoform 2 [Vitis vinifera];; (*TAIR) AT5G58787.2 (e_value=3e-49) | Symbols: | RING/U-box superfamily protein | chr5:23742733-23744324 FORWARD LENGTH=227;; (*ITAG) Solyc10g085130.1.1 (e_value=1e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63745622-63748169 transcript_region:SL2.40ch10:63745622..63748169- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7M6I2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00038793g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.25|0.4|1|0.25|0|5|0|500; (*GB) gi|357505893|ref|XP_003623235.1| (e_value=3e-150) Receptor kinase-like protein [Medicago truncatula];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=5e-106) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=4e-107) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc10g085120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63741956-63745075 transcript_region:SL2.40ch10:63741956..63745075+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00018570g0006.1 protein AED:0.03 eAED:0.03 QI:180|1|1|1|1|1|8|200|242; (*GB) gi|13384060|gb|AAK21254.1|AF335241_1 (e_value=6e-156) MADS-box transcription factor FBP23 [Petunia x hybrida];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=9e-107) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT2G03710.2 (e_value=4e-94) | Symbols: SEP4, AGL3 | K-box region and MADS-box transcription factor family protein | chr2:1129622-1131628 FORWARD LENGTH=257;; (*ITAG) Solyc03g114840.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:58767673-58773979 transcript_region:SL2.40ch03:58767673..58773979- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor 11 (AHRD V1 **** D9IFM5_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00018570g0007.1 protein AED:0.19 eAED:0.19 QI:231|0.87|0.88|1|0.62|0.77|9|99|259; (*GB) gi|27373049|gb|AAO12211.1|AF385746_1 (e_value=7e-171) MADS11 [Nicotiana tabacum];; (*SWP) sp|Q42429|AGL8_SOLTU (e_value=9e-140) Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G60910.1 (e_value=6e-103) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242;; (*ITAG) Solyc03g114830.2.1 (e_value=5e-161) genomic_reference:SL2.40ch03 gene_region:58752013-58758339 transcript_region:SL2.40ch03:58752013..58758339- go_terms:GO:0005515 functional_description:"MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00018570g0119.1 protein AED:0.18 eAED:0.18 QI:135|1|1|1|1|1|3|240|229 NbS00018570g0125.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|0|0.66|3|0|584 NbS00018570g0105.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.8|1|1|1|5|457|363 NbS00018570g0122.1 protein AED:0.28 eAED:0.29 QI:0|0.57|0.72|0.95|0.71|0.77|22|130|813 NbS00018570g0126.1 protein AED:0.46 eAED:0.50 QI:0|0|0|1|0|0|2|0|120 NbS00018570g0124.1 protein AED:0.47 eAED:0.73 QI:0|0|0|1|0|0|2|0|97 NbS00019643g0005.1 protein AED:0.15 eAED:0.18 QI:0|0.42|0.37|1|0.71|0.5|8|0|377; (*GB) gi|356550414|ref|XP_003543582.1| (e_value=1e-170) PREDICTED: putative phospholipid-transporting ATPase 4-like [Glycine max];; (*SWP) sp|Q9SGG3|ALA5_ARATH (e_value=4e-162) Putative phospholipid-transporting ATPase 5 OS=Arabidopsis thaliana GN=ALA5 PE=2 SV=1;; (*TAIR) AT1G72700.1 (e_value=3e-163) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:27366910-27371491 FORWARD LENGTH=1228;; (*ITAG) Solyc12g044920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45725468-45730501 transcript_region:SL2.40ch12:45725468..45730501+ go_terms:GO:0016020,GO:0016021 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 ***- C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0016020,GO:0016021 NbS00001305g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|152 NbS00001305g0010.1 protein AED:0.08 eAED:0.14 QI:0|0.2|0|1|0.4|0.16|6|0|567; (*GB) gi|359483198|ref|XP_002271405.2| (e_value=7e-111) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-63) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-64) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g068820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001305g0009.1 protein AED:0.12 eAED:0.15 QI:329|0.5|0.71|0.85|0.5|0.42|7|506|590; (*GB) gi|225444476|ref|XP_002272817.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis vinifera];; (*SWP) sp|Q02354|UTP6_YEAST (e_value=1e-12) U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1 SV=2;; (*TAIR) AT4G28200.1 (e_value=2e-160) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:13987808-13990422 REVERSE LENGTH=648;; (*ITAG) Solyc02g032920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20169876-20176239 transcript_region:SL2.40ch02:20169876..20176239+ go_terms:GO:0005622 functional_description:"U3 small nucleolar RNA-associated protein 6 homolog (AHRD V1 *-*- B5XAY9_SALSA); contains Interpro domain(s) IPR013949 U3 small nucleolar RNA-associated protein 6 "; GO:0005622 NbS00040234g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|737; (*GB) gi|225460143|ref|XP_002275945.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Vitis vinifera];; (*SWP) sp|Q9C9I6|PP116_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1;; (*TAIR) AT1G71490.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26933326-26935371 REVERSE LENGTH=681;; (*ITAG) Solyc09g082400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00060827g0002.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|209; (*GB) gi|224137114|ref|XP_002327025.1| (e_value=8e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|O80513|CCU41_ARATH (e_value=6e-96) Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1;; (*TAIR) AT2G44740.1 (e_value=5e-97) | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-18443304 REVERSE LENGTH=202;; (*ITAG) Solyc01g089850.2.1 (e_value=3e-132) genomic_reference:SL2.40ch01 gene_region:75337760-75340187 transcript_region:SL2.40ch01:75337760..75340187- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator Pho80 (AHRD V1 **** B6QI37_PENMQ); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00005158g0002.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|4|0|251; (*GB) gi|82400126|gb|ABB72802.1| (e_value=6e-89) L-allo-threonine aldolase-related protein [Solanum tuberosum];; (*SWP) sp|O07051|LTAA_AERJA (e_value=4e-17) L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1;; (*TAIR) AT1G08630.4 (e_value=3e-63) | Symbols: THA1 | threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=358;; (*ITAG) Solyc04g009960.2.1 (e_value=8e-93) genomic_reference:SL2.40ch04 gene_region:3280106-3284080 transcript_region:SL2.40ch04:3280106..3284080+ go_terms:GO:0008732 functional_description:"L-allo-threonine aldolase (AHRD V1 **** D7RJ69_CARPA); contains Interpro domain(s) IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase "; GO:0008732 NbS00005158g0010.1 protein AED:0.27 eAED:0.27 QI:84|1|1|1|0.75|0.77|9|371|555; (*GB) gi|224108011|ref|XP_002314687.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32040.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:13635116-13637592 FORWARD LENGTH=560;; (*ITAG) Solyc09g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63405858-63414461 transcript_region:SL2.40ch09:63405858..63414461- go_terms:GO:0015231 functional_description:"Folate/biopterin transporter family protein expressed (AHRD V1 **** Q10C46_ORYSJ); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0015231 NbS00029937g0004.1 protein AED:0.30 eAED:0.30 QI:264|0.88|0.84|0.94|0.94|0.94|19|0|776; (*GB) gi|225444758|ref|XP_002279372.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257610 [Vitis vinifera];; (*SWP) sp|Q6NXD8|DEN5B_DANRE (e_value=1e-12) DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2;; (*TAIR) AT5G35560.1 (e_value=0.0) | Symbols: | DENN (AEX-3) domain-containing protein | chr5:13742458-13747464 REVERSE LENGTH=765;; (*ITAG) Solyc07g041660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51165537-51176923 transcript_region:SL2.40ch07:51165537..51176923- functional_description:"DENN domain containing protein expressed (AHRD V1 *-*- Q10RU8_ORYSJ); contains Interpro domain(s) IPR001194 DENN "; NbS00041373g0002.1 protein AED:0.03 eAED:0.03 QI:312|1|1|1|0|0|3|454|146; (*GB) gi|147800088|emb|CAN70933.1| (e_value=3e-71) hypothetical protein VITISV_032482 [Vitis vinifera];; (*TAIR) AT1G11760.1 (e_value=2e-57) | Symbols: MED32 | MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3972356-3972811 REVERSE LENGTH=151;; (*ITAG) Solyc08g078240.2.1 (e_value=1e-71) genomic_reference:SL2.40ch08 gene_region:59236252-59238091 transcript_region:SL2.40ch08:59236252..59238091- functional_description:"Unknown Protein (AHRD V1)"; NbS00041373g0021.1 protein AED:0.39 eAED:0.63 QI:0|0|0|1|1|1|2|0|83 NbS00041373g0004.1 protein AED:0.28 eAED:0.30 QI:0|0.75|0.4|1|1|1|5|0|895; (*GB) gi|225449780|ref|XP_002271166.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264354 [Vitis vinifera];; (*TAIR) AT4G13970.1 (e_value=0.0) | Symbols: | zinc ion binding | chr4:8070696-8074134 REVERSE LENGTH=778;; (*ITAG) Solyc08g078230.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59227078-59235040 transcript_region:SL2.40ch08:59227078..59235040+ go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7MH91_ARALY); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0008270 NbS00041373g0001.1 protein AED:0.39 eAED:0.39 QI:233|1|1|1|0.81|0.91|12|21|349; (*GB) gi|356497117|ref|XP_003517409.1| (e_value=1e-168) PREDICTED: palmitoyl-protein thioesterase 1-like [Glycine max];; (*SWP) sp|Q20390|PPT1_CAEEL (e_value=3e-49) Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=8e-156) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc08g078250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59240307-59248781 transcript_region:SL2.40ch08:59240307..59248781+ go_terms:GO:0008474 functional_description:"Palmitoyl-protein thioesterase 1 (AHRD V1 **** B4FKB8_MAIZE); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00041373g0020.1 protein AED:0.39 eAED:0.40 QI:0|0.5|0.2|0.8|0|0|5|391|247; (*GB) gi|224138684|ref|XP_002326664.1| (e_value=4e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=6e-95) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT5G47310.1 (e_value=1e-98) | Symbols: | PPPDE putative thiol peptidase family protein | chr5:19201325-19202674 FORWARD LENGTH=245;; (*ITAG) Solyc08g078220.2.1 (e_value=1e-126) genomic_reference:SL2.40ch08 gene_region:59218203-59228729 transcript_region:SL2.40ch08:59218203..59228729+ functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_MOUSE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00041373g0003.1 protein AED:0.66 eAED:1.00 QI:0|0|0|1|1|1|2|0|99 NbS00027922g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|0.33|0|4|0|177; (*GB) gi|255555829|ref|XP_002518950.1| (e_value=7e-82) metal ion binding protein, putative [Ricinus communis];; (*TAIR) AT2G18196.1 (e_value=5e-73) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr2:7920793-7922268 REVERSE LENGTH=178;; (*ITAG) Solyc08g075880.2.1 (e_value=2e-99) genomic_reference:SL2.40ch08 gene_region:57133149-57134844 transcript_region:SL2.40ch08:57133149..57134844- go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- D7LYP1_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00035851g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|356543912|ref|XP_003540402.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100802937 [Glycine max];; (*TAIR) AT2G42610.2 (e_value=3e-75) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc12g014260.1.1 (e_value=7e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5085293-5085910 transcript_region:SL2.40ch12:5085293..5085910- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00008736g0008.1 protein AED:0.15 eAED:0.15 QI:77|1|1|1|0.5|0.55|9|531|333; (*GB) gi|225442535|ref|XP_002284154.1| (e_value=8e-158) PREDICTED: uncharacterized protein LOC100256719 [Vitis vinifera];; (*TAIR) AT1G52155.1 (e_value=5e-160) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:19417666-19419591 FORWARD LENGTH=319;; (*ITAG) Solyc03g120830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63134865-63137953 transcript_region:SL2.40ch03:63134865..63137953- functional_description:"F5F19.22 protein (Fragment) (AHRD V1 ***- Q9ZU10_ARATH)"; NbS00044033g0010.1 protein AED:0.19 eAED:0.19 QI:21|0.6|0.63|0.81|0.6|0.63|11|93|374; (*GB) gi|225439930|ref|XP_002280272.1| (e_value=3e-156) PREDICTED: syntaxin-71 [Vitis vinifera];; (*SWP) sp|Q9SF29|SYP71_ARATH (e_value=9e-139) Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1;; (*TAIR) AT3G09740.1 (e_value=7e-140) | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989615-2991354 FORWARD LENGTH=266;; (*ITAG) Solyc10g084210.1.1 (e_value=2e-156) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63171958-63176335 transcript_region:SL2.40ch10:63171958..63176335- go_terms:GO:0016020 functional_description:"Syntaxin-71 (AHRD V1 ***- C0L7E7_ANNCH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00044033g0011.1 protein AED:0.32 eAED:0.33 QI:0|1|0.85|1|0.66|0.85|7|336|302; (*GB) gi|225435806|ref|XP_002285757.1| (e_value=1e-131) PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera];; (*TAIR) AT4G26370.1 (e_value=7e-107) | Symbols: | antitermination NusB domain-containing protein | chr4:13334099-13336153 REVERSE LENGTH=301;; (*ITAG) Solyc01g028870.2.1 (e_value=2e-170) genomic_reference:SL2.40ch01 gene_region:33675673-33684181 transcript_region:SL2.40ch01:33675673..33684181+ go_terms:GO:0006355 functional_description:"N utilization substance protein B homolog (AHRD V1 *-*- D5S311_CLODI); contains Interpro domain(s) IPR006027 NusB/RsmB/TIM44 "; GO:0006355 NbS00049450g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.5|0.33|3|0|298; (*GB) gi|296089966|emb|CBI39785.3| (e_value=9e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=4e-24) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT5G55970.2 (e_value=1e-123) | Symbols: | RING/U-box superfamily protein | chr5:22668019-22669312 FORWARD LENGTH=343;; (*ITAG) Solyc12g015800.1.1 (e_value=1e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5801485-5804137 transcript_region:SL2.40ch12:5801485..5804137- go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00049450g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|356566382|ref|XP_003551411.1| (e_value=4e-98) PREDICTED: uncharacterized protein LOC100775952 [Glycine max];; (*TAIR) AT5G55960.1 (e_value=2e-93) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc12g015810.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5807186-5809127 transcript_region:SL2.40ch12:5807186..5809127- functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH)"; NbS00049450g0001.1 protein AED:0.37 eAED:0.39 QI:12|-1|0|1|-1|1|1|0|102; (*GB) gi|224061256|ref|XP_002300393.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55960.1 (e_value=9e-42) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc12g015810.1.1 (e_value=6e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5807186-5809127 transcript_region:SL2.40ch12:5807186..5809127- functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH)"; NbS00004788g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|1|1|3|0|117; (*ITAG) Solyc03g097080.2.1 (e_value=7e-51) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00014030g0012.1 protein AED:0.15 eAED:0.18 QI:0|0.75|0.53|0.92|0.66|0.69|13|0|546; (*GB) gi|147864402|emb|CAN80502.1| (e_value=0.0) hypothetical protein VITISV_007231 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=3e-12) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G39050.1 (e_value=2e-179) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc01g110190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88709560-88721589 transcript_region:SL2.40ch01:88709560..88721589- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00014030g0011.1 protein AED:0.52 eAED:0.52 QI:0|0.5|0|0.66|1|0.66|3|0|113; (*GB) gi|225427728|ref|XP_002265593.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100253714 [Vitis vinifera];; (*ITAG) Solyc10g054080.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50032317-50042929 transcript_region:SL2.40ch10:50032317..50042929- go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00014030g0001.1 protein AED:0.06 eAED:0.10 QI:0|1|0.5|1|1|1|4|0|260; (*GB) gi|255543823|ref|XP_002512974.1| (e_value=3e-44) hypothetical protein RCOM_1449530 [Ricinus communis];; (*SWP) sp|A2WY46|EAR1_ORYSI (e_value=1e-30) Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1;; (*TAIR) AT3G26120.1 (e_value=3e-30) | Symbols: TEL1 | terminal EAR1-like 1 | chr3:9546398-9549186 FORWARD LENGTH=615;; (*ITAG) Solyc01g110200.1.1 (e_value=3e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88729920-88730997 transcript_region:SL2.40ch01:88729920..88730997+ functional_description:"MEI2-like RNA binding protein (AHRD V1 *--- Q652K6_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; NbS00014030g0007.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|224077894|ref|XP_002305454.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQZ7|STHX_ARATH (e_value=1e-22) Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1;; (*TAIR) AT1G75540.1 (e_value=9e-24) | Symbols: STH2 | salt tolerance homolog2 | chr1:28366059-28367398 FORWARD LENGTH=331;; (*ITAG) Solyc01g110180.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:88706256-88707726 transcript_region:SL2.40ch01:88706256..88707726+ go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00014030g0109.1 protein AED:0.02 eAED:0.02 QI:217|1|1|1|1|1|2|6|202 NbS00014030g0102.1 protein AED:0.45 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|182 NbS00014030g0108.1 protein AED:0.46 eAED:0.52 QI:0|0.5|0.45|0.90|0.6|0.63|11|0|292 NbS00041124g0004.1 protein AED:0.01 eAED:0.01 QI:98|1|1|1|0.5|0.66|3|471|103 NbS00028064g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0.5|0.5|1|1|2|456|160; (*ITAG) Solyc01g110350.2.1 (e_value=1e-50) genomic_reference:SL2.40ch01 gene_region:88843039-88844127 transcript_region:SL2.40ch01:88843039..88844127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028064g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.25|0.4|1|0.75|0.8|5|0|553; (*GB) gi|356509549|ref|XP_003523510.1| (e_value=0.0) PREDICTED: endoglucanase 24-like [Glycine max];; (*SWP) sp|Q8GY58|GUN23_ARATH (e_value=1e-175) Endoglucanase 23 OS=Arabidopsis thaliana GN=At4g39000 PE=2 SV=2;; (*TAIR) AT4G39000.1 (e_value=9e-177) | Symbols: AtGH9B17, GH9B17 | glycosyl hydrolase 9B17 | chr4:18171722-18173797 REVERSE LENGTH=493;; (*ITAG) Solyc01g110340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88831044-88837188 transcript_region:SL2.40ch01:88831044..88837188+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00028064g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|193527448|gb|ACF19789.1| (e_value=2e-19) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00028064g0012.1 protein AED:0.27 eAED:0.27 QI:0|1|0.8|1|1|1|5|0|398; (*GB) gi|4827253|dbj|BAA77603.1| (e_value=0.0) plastidic aldolase [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc01g110360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88844597-88847246 transcript_region:SL2.40ch01:88844597..88847246+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B0FPD8_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00037736g0007.1 protein AED:0.00 eAED:0.00 QI:422|1|0.8|1|0.75|0.6|5|416|302; (*GB) gi|255568343|ref|XP_002525146.1| (e_value=3e-112) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=2e-20) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT2G42380.2 (e_value=6e-92) | Symbols: ATBZIP34, BZIP34 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17647205-17648660 REVERSE LENGTH=321;; (*ITAG) Solyc07g053450.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:59219093-59221036 transcript_region:SL2.40ch07:59219093..59221036- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 **** D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0003677 NbS00037736g0002.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|0|0|2|131|342; (*GB) gi|255568337|ref|XP_002525143.1| (e_value=1e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G58110.1 (e_value=1e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). | chr3:21516775-21519129 FORWARD LENGTH=784;; (*ITAG) Solyc07g053440.2.1 (e_value=2e-138) genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)"; NbS00037736g0003.1 protein AED:0.36 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|532; (*GB) gi|302143382|emb|CBI21943.3| (e_value=4e-78) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G58110.1 (e_value=1e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42370.1); Has 2534 Blast hits to 1905 proteins in 233 species: Archae - 11; Bacteria - 102; Metazoa - 890; Fungi - 241; Plants - 124; Viruses - 59; Other Eukaryotes - 1107 (source: NCBI BLink). | chr3:21516775-21519129 FORWARD LENGTH=784;; (*ITAG) Solyc07g053440.2.1 (e_value=1e-154) genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)"; NbS00037736g0111.1 protein AED:0.01 eAED:0.01 QI:233|1|1|1|0.5|0.66|3|319|174 NbS00037736g0103.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|241 NbS00020052g0005.1 protein AED:0.23 eAED:0.23 QI:242|1|1|1|0.66|0.8|10|338|467; (*GB) gi|225457901|ref|XP_002271105.1| (e_value=2e-165) PREDICTED: uncharacterized protein LOC100259195 [Vitis vinifera];; (*SWP) sp|Q8BIJ7|RUFY1_MOUSE (e_value=7e-13) RUN and FYVE domain-containing protein 1 OS=Mus musculus GN=Rufy1 PE=1 SV=1;; (*TAIR) AT1G20110.1 (e_value=1e-154) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc02g062000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28157260-28164320 transcript_region:SL2.40ch02:28157260..28164320- go_terms:GO:0005515,GO:0035091 functional_description:"RUN and FYVE domain-containing protein 1 (AHRD V1 *--- B0WS48_CULQU); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00020052g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|0|0|2|0|147; (*GB) gi|57013899|ref|YP_173373.1| (e_value=1e-69) hypothetical protein NitaMp026 [Nicotiana tabacum]; NbS00009512g0006.1 protein AED:0.37 eAED:0.37 QI:135|1|0.5|1|1|1|2|0|196; (*GB) gi|224093164|ref|XP_002309816.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT2G31560.2 (e_value=7e-58) | Symbols: | Protein of unknown function (DUF1685) | chr2:13436611-13437312 FORWARD LENGTH=202;; (*ITAG) Solyc06g073450.2.1 (e_value=7e-105) genomic_reference:SL2.40ch06 gene_region:41661853-41663346 transcript_region:SL2.40ch06:41661853..41663346+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00057942g0007.1 protein AED:0.24 eAED:0.25 QI:0|0.91|0.84|1|0.83|0.92|13|0|413; (*GB) gi|255572824|ref|XP_002527344.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9STV4|CIPK8_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1;; (*TAIR) AT4G24400.1 (e_value=0.0) | Symbols: CIPK8, SnRK3.13, PKS11, ATCIPK8 | CBL-interacting protein kinase 8 | chr4:12617379-12620481 FORWARD LENGTH=445;; (*ITAG) Solyc04g076810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59273482-59279274 transcript_region:SL2.40ch04:59273482..59279274- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 17 (AHRD V1 **** C4P7W6_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00057942g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|471; (*GB) gi|359492976|ref|XP_002283668.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=2e-122) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=1e-123) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc04g076800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59270700-59273291 transcript_region:SL2.40ch04:59270700..59273291+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00057942g0003.1 protein AED:0.40 eAED:0.45 QI:0|0|0|1|1|1|2|0|308; (*GB) gi|359492976|ref|XP_002283668.2| (e_value=6e-127) PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera];; (*SWP) sp|P93005|PP181_ARATH (e_value=3e-42) Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1;; (*TAIR) AT2G33680.1 (e_value=2e-43) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:14249608-14251791 FORWARD LENGTH=727;; (*ITAG) Solyc04g076800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59270700-59273291 transcript_region:SL2.40ch04:59270700..59273291+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00060377g0005.1 protein AED:0.01 eAED:0.01 QI:247|1|1|1|0.66|0.75|4|429|105; (*GB) gi|297737946|emb|CBI27147.3| (e_value=6e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=3e-59) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=9e-58) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00060377g0004.1 protein AED:0.37 eAED:0.41 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|225457497|ref|XP_002267776.1| (e_value=5e-14) PREDICTED: uncharacterized protein LOC100266699 [Vitis vinifera];; (*TAIR) AT5G23130.1 (e_value=7e-14) | Symbols: | Peptidoglycan-binding LysM domain-containing protein | chr5:7781475-7783333 FORWARD LENGTH=397;; (*ITAG) Solyc02g014090.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:6283148-6286134 transcript_region:SL2.40ch02:6283148..6286134+ go_terms:GO:0016998 functional_description:"LysM domain containing protein expressed (AHRD V1 ***- Q7XD97_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00031754g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|3|0|338; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=1e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96330|FLS1_ARATH (e_value=8e-32) Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1;; (*TAIR) AT5G08640.2 (e_value=6e-33) | Symbols: FLS1 | flavonol synthase 1 | chr5:2804009-2805175 FORWARD LENGTH=336;; (*ITAG) Solyc03g116290.1.1 (e_value=3e-99) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59822418-59824195 transcript_region:SL2.40ch03:59822418..59824195+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 **-* G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00004679g0009.1 protein AED:0.34 eAED:0.35 QI:0|0.62|0.44|0.88|1|1|9|0|616; (*GB) gi|350539281|ref|NP_001234129.1| (e_value=0.0) calnexin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|Q39817|CALX_SOYBN (e_value=0.0) Calnexin homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G61790.1 (e_value=0.0) | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530;; (*ITAG) Solyc03g118040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61077682-61081165 transcript_region:SL2.40ch03:61077682..61081165- go_terms:GO:0005509 functional_description:"Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR018124 Calreticulin/calnexin, conserved site IPR001580 Calreticulin/calnexin "; GO:0005509 NbS00004679g0011.1 protein AED:0.39 eAED:0.39 QI:231|1|1|1|0|0.5|4|124|48 NbS00004679g0015.1 protein AED:0.20 eAED:0.20 QI:0|0.63|0.5|0.91|0.63|0.58|12|0|563; (*GB) gi|27529830|dbj|BAC53930.1| (e_value=0.0) amidase-like protein [Nicotiana tabacum];; (*SWP) sp|B2V855|GATA_SULSY (e_value=2e-35) Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1;; (*TAIR) AT5G07360.1 (e_value=0.0) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659;; (*ITAG) Solyc06g068690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38974327-38979215 transcript_region:SL2.40ch06:38974327..38979215+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A3HSJ3_9BACT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00004679g0007.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|103 NbS00039598g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.83|0.83|1|1|6|0|303; (*GB) gi|365222862|gb|AEW69783.1| (e_value=1e-112) Hop-interacting protein THI008 [Solanum lycopersicum];; (*SWP) sp|Q8GXL7|GAT24_ARATH (e_value=9e-75) GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2;; (*TAIR) AT3G21175.2 (e_value=6e-78) | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295;; (*ITAG) Solyc01g106030.2.1 (e_value=3e-145) genomic_reference:SL2.40ch01 gene_region:85768997-85775706 transcript_region:SL2.40ch01:85768997..85775706+ go_terms:GO:0008431 functional_description:"Pseudo response regulator (AHRD V1 *--- B9N4C8_POPTR); contains Interpro domain(s) IPR010402 CCT domain "; GO:0008431 NbS00002006g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.78|1|0.94|0.94|19|533|1240; (*GB) gi|224133372|ref|XP_002328026.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q14692|BMS1_HUMAN (e_value=5e-131) Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1;; (*TAIR) AT1G06720.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2060615-2067281 REVERSE LENGTH=1147;; (*ITAG) Solyc01g097640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80168709-80183856 transcript_region:SL2.40ch01:80168709..80183856+ go_terms:GO:0005525,GO:0034511,GO:0003924 functional_description:"Ribosome biogenesis protein BMS1 homolog (AHRD V1 *--- BMS1_HUMAN); contains Interpro domain(s) IPR007034 Protein of unknown function DUF663 "; GO:0005525,GO:0034511,GO:0003924 NbS00041876g0006.1 protein AED:0.30 eAED:0.31 QI:249|0.25|0.6|1|0.5|0.6|5|671|142 NbS00041876g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.9|0.90|1|1|1|11|233|632; (*GB) gi|302144036|emb|CBI23141.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G53450.1 (e_value=0.0) | Symbols: ORG1 | OBP3-responsive gene 1 | chr5:21689204-21692242 FORWARD LENGTH=670;; (*ITAG) Solyc03g083420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46836502-46843514 transcript_region:SL2.40ch03:46836502..46843514+ go_terms:GO:0005515 functional_description:"OBP3-responsive gene 1 (AHRD V1 **-- D7MSY5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00007569g0010.1 protein AED:0.08 eAED:0.08 QI:298|1|1|1|0.85|0.87|8|623|335; (*GB) gi|225454456|ref|XP_002280548.1| (e_value=0.0) PREDICTED: CMP-sialic acid transporter [Vitis vinifera];; (*SWP) sp|Q8LGE9|CSTR1_ARATH (e_value=1e-179) CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1;; (*TAIR) AT5G41760.2 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr5:16706978-16709204 FORWARD LENGTH=340;; (*ITAG) Solyc01g095540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78525146-78530438 transcript_region:SL2.40ch01:78525146..78530438- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 6 (AHRD V1 **** D7LWC1_ARALY); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005459 NbS00007569g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|224130486|ref|XP_002320849.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41761.1 (e_value=5e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc01g095530.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:78523066-78523612 transcript_region:SL2.40ch01:78523066..78523612- functional_description:"Unknown Protein (AHRD V1)"; NbS00007569g0011.1 protein AED:0.03 eAED:0.04 QI:0|0.33|0|0.75|0.33|0.25|4|0|713; (*GB) gi|359489706|ref|XP_002280598.2| (e_value=0.0) PREDICTED: mitogen-activated protein kinase kinase kinase 7-like [Vitis vinifera];; (*SWP) sp|P25848|PHY1_CERPU (e_value=2e-43) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT1G64300.2 (e_value=0.0) | Symbols: | Protein kinase family protein | chr1:23863543-23865776 FORWARD LENGTH=717;; (*ITAG) Solyc01g095550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78531568-78534497 transcript_region:SL2.40ch01:78531568..78534497+ go_terms:GO:0004712 functional_description:"Receptor-interacting serine/threonine-protein kinase 1 (AHRD V1 *--* RIPK1_HUMAN); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0004712 NbS00012731g0012.1 protein AED:0.16 eAED:0.16 QI:317|0.85|0.8|1|0.64|0.6|15|992|914; (*GB) gi|225429898|ref|XP_002283635.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 [Vitis vinifera];; (*SWP) sp|Q9SCJ9|UBP26_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 26 OS=Arabidopsis thaliana GN=UBP26 PE=1 SV=3;; (*TAIR) AT3G49600.1 (e_value=0.0) | Symbols: UBP26, SUP32, ATUBP26 | ubiquitin-specific protease 26 | chr3:18380942-18386662 REVERSE LENGTH=1067;; (*ITAG) Solyc03g078390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44349091-44368809 transcript_region:SL2.40ch03:44349091..44368809+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9S2Y0_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00049297g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.57|1|0.83|0.71|7|0|433; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc11g064900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47269846-47276122 transcript_region:SL2.40ch11:47269846..47276122- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00049297g0008.1 protein AED:0.28 eAED:0.28 QI:411|0.9|0.81|1|0.7|0.54|11|0|433; (*GB) gi|225426412|ref|XP_002270065.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT1G63500.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487;; (*ITAG) Solyc11g064890.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47257190-47268568 transcript_region:SL2.40ch11:47257190..47268568+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW31_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00009875g0002.1 protein AED:0.44 eAED:0.45 QI:0|0|0|0.5|0|0|2|0|83; (*GB) gi|224127698|ref|XP_002329342.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FID5|Y5393_ARATH (e_value=2e-20) Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1;; (*TAIR) AT5G38280.1 (e_value=6e-26) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc05g009090.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3230564-3232618 transcript_region:SL2.40ch05:3230564..3232618+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00015265g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|200; (*GB) gi|133711808|gb|ABO36626.1| (e_value=1e-18) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*ITAG) Solyc04g025760.1.1 (e_value=6e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:22329710-22330393 transcript_region:SL2.40ch04:22329710..22330393- go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00015265g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0.25|1|1|1|4|211|503; (*GB) gi|351728011|ref|NP_001238204.1| (e_value=2e-15) NAC domain protein [Glycine max];; (*SWP) sp|O49255|NAC29_ARATH (e_value=1e-15) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=1e-16) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc12g013620.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4462011-4464637 transcript_region:SL2.40ch12:4462011..4464637- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1K9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00029208g0012.1 protein AED:0.14 eAED:0.15 QI:0|1|1|1|0.75|0.6|5|412|300; (*GB) gi|255568647|ref|XP_002525297.1| (e_value=1e-138) GTP-binding protein engB, putative [Ricinus communis];; (*SWP) sp|O81004|Y2287_ARATH (e_value=4e-132) GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2;; (*TAIR) AT2G22870.1 (e_value=3e-133) | Symbols: EMB2001 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:9739476-9740921 FORWARD LENGTH=300;; (*ITAG) Solyc09g008730.2.1 (e_value=9e-170) genomic_reference:SL2.40ch09 gene_region:2160719-2165502 transcript_region:SL2.40ch09:2160719..2165502+ go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein (AHRD V1 **** B4FR01_MAIZE); contains Interpro domain(s) IPR019987 GTP-binding protein, ribosome biogenesis, YsxC "; GO:0043022,GO:0003924 NbS00029208g0004.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|225; (*ITAG) Solyc09g008760.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2190939-2191652 transcript_region:SL2.40ch09:2190939..2191652+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00029208g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|171; (*ITAG) Solyc09g008740.1.1 (e_value=2e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:2170423-2170956 transcript_region:SL2.40ch09:2170423..2170956- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00029208g0002.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.12|1|1|8|0|427; (*ITAG) Solyc01g094420.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00029208g0013.1 protein AED:0.45 eAED:0.81 QI:0|0|0|1|0|0|2|0|113 NbS00017972g0002.1 protein AED:0.49 eAED:0.80 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|255588681|ref|XP_002534684.1| (e_value=2e-32) conserved hypothetical protein [Ricinus communis]; NbS00017972g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0.4|0.8|0.25|0.6|5|180|135 NbS00005193g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|86; (*ITAG) Solyc11g012550.1.1 (e_value=7e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5357146-5365080 transcript_region:SL2.40ch11:5357146..5365080+ functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016300g0015.1 protein AED:0.13 eAED:0.17 QI:91|1|0.87|1|0.57|0.5|8|389|212; (*GB) gi|356512588|ref|XP_003525000.1| (e_value=2e-116) PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-28) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G31800.1 (e_value=3e-113) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=3e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00016300g0016.1 protein AED:0.32 eAED:0.33 QI:1|0|0|1|1|1|4|0|146; (*GB) gi|357121813|ref|XP_003562612.1| (e_value=1e-34) PREDICTED: protein notum homolog isoform 2 [Brachypodium distachyon];; (*TAIR) AT5G45280.2 (e_value=2e-23) | Symbols: | Pectinacetylesterase family protein | chr5:18346862-18349488 FORWARD LENGTH=391;; (*ITAG) Solyc08g014380.1.1 (e_value=5e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4195587-4198718 transcript_region:SL2.40ch08:4195587..4198718- go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00016300g0017.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|0.8|0.83|6|0|159; (*GB) gi|359474763|ref|XP_002273920.2| (e_value=1e-28) PREDICTED: protein notum homolog [Vitis vinifera];; (*TAIR) AT4G19420.2 (e_value=3e-28) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc03g078260.2.1 (e_value=7e-59) genomic_reference:SL2.40ch03 gene_region:43808497-43812309 transcript_region:SL2.40ch03:43808497..43812309+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00016300g0005.1 protein AED:0.89 eAED:0.98 QI:0|0|0|0.33|1|1|3|0|207; (*GB) gi|225434181|ref|XP_002279175.1| (e_value=8e-103) PREDICTED: dual specificity protein kinase shkC-like [Vitis vinifera];; (*SWP) sp|D3Z7P3|GLSK_MOUSE (e_value=7e-15) Glutaminase kidney isoform, mitochondrial OS=Mus musculus GN=Gls PE=1 SV=1;; (*TAIR) AT2G31800.1 (e_value=5e-100) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=1e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00016300g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|680; (*GB) gi|359493563|ref|XP_002269754.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera];; (*SWP) sp|Q9C9H9|PP114_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1;; (*TAIR) AT1G71420.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26917822-26920059 REVERSE LENGTH=745;; (*ITAG) Solyc02g062630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28953209-28955056 transcript_region:SL2.40ch02:28953209..28955056- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00016300g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|113; (*ITAG) Solyc06g007650.1.1 (e_value=2e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1660573-1662827 transcript_region:SL2.40ch06:1660573..1662827+ go_terms:GO:0080002 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 **** B6EWX8_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00017016g0008.1 protein AED:0.32 eAED:0.32 QI:450|1|1|1|0.90|0.75|12|0|415; (*GB) gi|225440085|ref|XP_002282577.1| (e_value=0.0) PREDICTED: calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Vitis vinifera];; (*SWP) sp|Q10KY3|CAMK1_ORYSJ (e_value=0.0) Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica GN=CAMK1 PE=1 SV=1;; (*TAIR) AT2G41140.1 (e_value=0.0) | Symbols: CRK1, ATCRK1, ATCBK3 | CDPK-related kinase 1 | chr2:17150492-17153378 FORWARD LENGTH=576;; (*ITAG) Solyc10g078390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59546048-59551107 transcript_region:SL2.40ch10:59546048..59551107+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 ***- Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00029619g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|0.66|0.75|4|435|149; (*GB) gi|297734823|emb|CBI17057.3| (e_value=2e-29) unnamed protein product [Vitis vinifera];; (*SWP) sp|P41099|RLA2_PARAR (e_value=5e-29) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=9e-26) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc06g074430.2.1 (e_value=8e-35) genomic_reference:SL2.40ch06 gene_region:42457712-42460408 transcript_region:SL2.40ch06:42457712..42460408+ go_terms:GO:0003735 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0003735 NbS00029619g0006.1 protein AED:0.18 eAED:0.21 QI:0|0.71|0.53|0.93|0.85|0.86|15|0|699; (*GB) gi|255565595|ref|XP_002523787.1| (e_value=0.0) poly [ADP-ribose] polymerase, putative [Ricinus communis];; (*SWP) sp|Q9SWB4|PARP3_SOYBN (e_value=0.0) Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1;; (*TAIR) AT5G22470.1 (e_value=0.0) | Symbols: | NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases | chr5:7447045-7450743 FORWARD LENGTH=814;; (*ITAG) Solyc01g009470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:3694546-3698607 transcript_region:SL2.40ch01:3694546..3698607- go_terms:GO:0005634,GO:0006471,GO:0003950,GO:0005622 functional_description:"Poly (AHRD V1 ***- B9SCR8_RICCO); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0005634,GO:0006471,GO:0003950,GO:0005622 NbS00033312g0006.1 protein AED:0.19 eAED:0.19 QI:192|0.88|0.94|1|0.94|0.89|19|147|608; (*GB) gi|159906513|gb|ABI98682.2| (e_value=0.0) chloroplast NADP-malic enzyme precursor [Nicotiana tabacum];; (*SWP) sp|P37222|MAOC_SOLLC (e_value=0.0) NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G79750.1 (e_value=0.0) | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646;; (*ITAG) Solyc03g120990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63268132-63273261 transcript_region:SL2.40ch03:63268132..63273261+ go_terms:GO:0004473 functional_description:"Malic enzyme (AHRD V1 ***- O04935_SOLLC); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00001859g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.42|0.5|1|0.85|0.75|8|0|558; (*GB) gi|313585890|gb|ADR71054.1| (e_value=0.0) phosphoglycerate kinase [Nicotiana benthamiana];; (*SWP) sp|Q42961|PGKH_TOBAC (e_value=0.0) Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G56190.1 (e_value=0.0) | Symbols: | Phosphoglycerate kinase family protein | chr1:21028403-21030454 FORWARD LENGTH=478;; (*ITAG) Solyc07g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65209792-65212260 transcript_region:SL2.40ch07:65209792..65212260- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- O81394_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00003823g0001.1 protein AED:0.00 eAED:0.00 QI:114|1|1|1|0|0.5|2|300|207; (*GB) gi|359491758|ref|XP_002265727.2| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100243309 [Vitis vinifera];; (*TAIR) AT5G08050.1 (e_value=1e-43) | Symbols: | Protein of unknown function (DUF1118) | chr5:2578418-2578964 FORWARD LENGTH=158;; (*ITAG) Solyc03g115020.2.1 (e_value=7e-69) genomic_reference:SL2.40ch03 gene_region:58930557-58932425 transcript_region:SL2.40ch03:58930557..58932425- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009500 Protein of unknown function DUF1118 "; NbS00003823g0002.1 protein AED:0.18 eAED:0.18 QI:713|0.5|0.66|1|0|0.33|3|0|327; (*GB) gi|350539886|ref|NP_001234564.1| (e_value=1e-92) TCP transcription factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9FME3|TCP5_ARATH (e_value=5e-44) Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=2 SV=1;; (*TAIR) AT5G60970.1 (e_value=4e-45) | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 | chr5:24535570-24536652 REVERSE LENGTH=360;; (*ITAG) Solyc03g115010.1.1 (e_value=4e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58919864-58920889 transcript_region:SL2.40ch03:58919864..58920889- functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00003823g0121.1 protein AED:0.20 eAED:0.20 QI:169|1|1|1|0.5|0.33|3|450|112 NbS00003823g0120.1 protein AED:0.39 eAED:0.39 QI:15|0|0|1|0|0.5|2|0|226 NbS00003823g0122.1 protein AED:0.13 eAED:0.14 QI:648|0.6|0.5|1|1|0.83|6|0|1118 NbS00003823g0130.1 protein AED:0.26 eAED:0.26 QI:289|1|0.94|1|0.87|0.82|17|0|638 NbS00003823g0102.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|146 NbS00003823g0129.1 protein AED:0.28 eAED:0.28 QI:269|0.72|0.66|1|0.63|0.75|12|386|508 NbS00017219g0006.1 protein AED:0.11 eAED:0.13 QI:192|0.8|0.81|1|0.6|0.63|11|460|483; (*GB) gi|365222924|gb|AEW69814.1| (e_value=0.0) Hop-interacting protein THI115 [Solanum lycopersicum];; (*TAIR) AT5G13020.1 (e_value=1e-144) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc10g044960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24529174-24537734 transcript_region:SL2.40ch10:24529174..24537734+ functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00029932g0001.1 protein AED:0.27 eAED:0.27 QI:286|0|0.33|0.66|0|0|3|0|28 NbC25472120g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|1|3|0|129; (*GB) gi|4107276|emb|CAA67130.1| (e_value=2e-62) acetyl-CoA synthetase [Solanum tuberosum];; (*SWP) sp|B9DGD6|ACS_ARATH (e_value=7e-61) Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1;; (*TAIR) AT5G36880.1 (e_value=3e-62) | Symbols: ACS | acetyl-CoA synthetase | chr5:14534961-14539084 REVERSE LENGTH=693;; (*ITAG) Solyc07g017860.2.1 (e_value=3e-65) genomic_reference:SL2.40ch07 gene_region:8204531-8209762 transcript_region:SL2.40ch07:8204531..8209762+ go_terms:GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- Q2J3D0_RHOP2); contains Interpro domain(s) IPR011904 Acetate--CoA ligase "; GO:0003987 NbS00035440g0004.1 protein AED:0.20 eAED:0.20 QI:282|0.2|0.5|0.83|0.6|0.33|6|0|510; (*GB) gi|147853140|emb|CAN80689.1| (e_value=2e-91) hypothetical protein VITISV_005501 [Vitis vinifera];; (*SWP) sp|Q9SKN2|DRB2_ARATH (e_value=4e-73) Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1;; (*TAIR) AT2G28380.1 (e_value=3e-74) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc11g069460.1.1 (e_value=4e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51130373-51136647 transcript_region:SL2.40ch11:51130373..51136647+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein 2 (AHRD V1 ***- D7LHN0_ARALY); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00009850g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|218; (*GB) gi|255560193|ref|XP_002521114.1| (e_value=1e-88) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G48850.1 (e_value=1e-64) | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306;; (*ITAG) Solyc09g061700.2.1 (e_value=2e-116) genomic_reference:SL2.40ch09 gene_region:55792112-55794516 transcript_region:SL2.40ch09:55792112..55794516- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017366g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|598; (*GB) gi|255547442|ref|XP_002514778.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|P0C896|PP209_ARATH (e_value=6e-164) Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1;; (*TAIR) AT3G02650.1 (e_value=4e-165) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:568135-569865 FORWARD LENGTH=576;; (*ITAG) Solyc11g005140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:128953-130722 transcript_region:SL2.40ch11:128953..130722+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A0JBX0_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017366g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.42|0.85|0.5|0.42|7|68|167; (*GB) gi|225435975|ref|XP_002271328.1| (e_value=6e-68) PREDICTED: oligoribonuclease [Vitis vinifera];; (*SWP) sp|Q9ZVE0|ORN_ARATH (e_value=1e-56) Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2;; (*TAIR) AT2G26970.2 (e_value=7e-58) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:11509908-11511903 REVERSE LENGTH=218;; (*ITAG) Solyc06g082810.2.1 (e_value=8e-76) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbS00017366g0015.1 protein AED:0.15 eAED:0.39 QI:52|0|0.5|1|1|0.5|2|0|68 NbS00017366g0017.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|0|0|2|0|149 NbS00017366g0003.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|1|1|2|0|165; (*GB) gi|388512253|gb|AFK44188.1| (e_value=1e-44) unknown [Medicago truncatula];; (*SWP) sp|Q9LG23|PPR82_ARATH (e_value=5e-39) Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1;; (*TAIR) AT1G55890.1 (e_value=4e-40) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20901364-20902560 FORWARD LENGTH=398;; (*ITAG) Solyc02g079830.1.1 (e_value=4e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024630g0001.1 protein AED:0.06 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|481; (*GB) gi|386646582|gb|AFJ14635.1| (e_value=7e-34) dehydration-responsive element-binding protein (DREB2), partial [Malus x domestica];; (*SWP) sp|Q8LFR2|DRE2C_ARATH (e_value=3e-31) Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2;; (*TAIR) AT2G40340.1 (e_value=3e-32) | Symbols: DREB2C, AtERF48 | Integrase-type DNA-binding superfamily protein | chr2:16848665-16850357 REVERSE LENGTH=341;; (*ITAG) Solyc10g076370.1.1 (e_value=3e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58660798-58662015 transcript_region:SL2.40ch10:58660798..58662015+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014392g0020.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0|0.75|0.33|0.25|4|0|992; (*GB) gi|225457491|ref|XP_002267777.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22070 [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=6e-113) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=4e-114) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc03g098580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54338126-54340698 transcript_region:SL2.40ch03:54338126..54340698+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014392g0003.1 protein AED:0.08 eAED:0.20 QI:0|1|0.5|1|0|0|2|390|398; (*GB) gi|147854704|emb|CAN79596.1| (e_value=2e-89) hypothetical protein VITISV_042386 [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=9e-77) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=7e-78) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc03g098590.2.1 (e_value=2e-129) genomic_reference:SL2.40ch03 gene_region:54343599-54347276 transcript_region:SL2.40ch03:54343599..54347276+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014392g0008.1 protein AED:0.21 eAED:0.28 QI:0|0|0|1|1|1|2|0|141; (*ITAG) Solyc03g098540.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:54292126-54293250 transcript_region:SL2.40ch03:54292126..54293250+ functional_description:"Polyprotein (Fragment) (AHRD V1 *-*- B4YF15_ANACO)"; NbS00014392g0023.1 protein AED:0.09 eAED:0.12 QI:0|0.37|0.11|1|0.5|0.11|9|0|719; (*GB) gi|302794953|ref|XP_002979240.1| (e_value=0.0) oligosaccharyltransferase subunit STT3 [Selaginella moellendorffii];; (*SWP) sp|Q54NM9|STT3_DICDI (e_value=1e-128) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 OS=Dictyostelium discoideum GN=stt3 PE=3 SV=1;; (*TAIR) AT1G34130.1 (e_value=0.0) | Symbols: STT3B | staurosporin and temperature sensitive 3-like b | chr1:12430000-12432985 FORWARD LENGTH=735;; (*ITAG) Solyc03g098600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54347680-54353815 transcript_region:SL2.40ch03:54347680..54353815- go_terms:GO:0016020 functional_description:"Oligosaccharyl transferase STT3 subunit (AHRD V1 ***- B6T514_MAIZE); contains Interpro domain(s) IPR003674 Oligosaccharyl transferase, STT3 subunit "; GO:0016020 NbS00014392g0024.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.61|0.84|0.91|0.92|13|0|861; (*GB) gi|225457506|ref|XP_002269313.1| (e_value=0.0) PREDICTED: plastid division protein CDP1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8VY16|CDP1_ARATH (e_value=0.0) Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2;; (*TAIR) AT3G19180.1 (e_value=0.0) | Symbols: ARC6H, PARC6, ATCDP1, CDP1 | paralog of ARC6 | chr3:6632810-6636953 FORWARD LENGTH=819;; (*ITAG) Solyc03g098610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54355155-54363385 transcript_region:SL2.40ch03:54355155..54363385- go_terms:GO:0043621 functional_description:"Genomic DNA chromosome 3 P1 clone MVI11 (AHRD V1 **-- Q9LJL2_ARATH)"; GO:0043621 NbS00014392g0022.1 protein AED:0.46 eAED:0.46 QI:0|1|0.5|1|0|0|2|0|62 NbS00011409g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|363808196|ref|NP_001242230.1| (e_value=3e-15) uncharacterized protein LOC100793687 [Glycine max];; (*ITAG) Solyc05g051010.2.1 (e_value=4e-22) genomic_reference:SL2.40ch05 gene_region:60362987-60364407 transcript_region:SL2.40ch05:60362987..60364407+ go_terms:GO:0004022 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022 NbS00011409g0004.1 protein AED:0.20 eAED:0.20 QI:4|0|0|1|0|0|2|0|106; (*ITAG) Solyc11g021010.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:13192387-13192908 transcript_region:SL2.40ch11:13192387..13192908- functional_description:"Polyprotein (AHRD V1 *-*- Q94KV0_ARATH)"; NbS00016515g0009.1 protein AED:0.08 eAED:0.08 QI:34|1|0.90|1|1|1|11|0|483; (*GB) gi|225464960|ref|XP_002276067.1| (e_value=0.0) PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Vitis vinifera];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=3e-112) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT1G08320.3 (e_value=5e-160) | Symbols: TGA9, bZIP21 | bZIP transcription factor family protein | chr1:2622113-2627451 REVERSE LENGTH=481;; (*ITAG) Solyc06g074320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42332448-42338082 transcript_region:SL2.40ch06:42332448..42338082+ go_terms:GO:0005515,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 ***- Q93XM6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003677 NbS00016515g0001.1 protein AED:0.19 eAED:0.19 QI:328|0.5|0.66|1|0|0|3|237|423; (*GB) gi|255565615|ref|XP_002523797.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=0.0) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc11g068350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50183235-50186105 transcript_region:SL2.40ch11:50183235..50186105+ functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00003607g0010.1 protein AED:0.09 eAED:0.10 QI:0|1|0.66|1|0.5|0.33|3|0|166; (*GB) gi|297738103|emb|CBI27304.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69210.2 (e_value=8e-15) | Symbols: | Uncharacterised protein family UPF0090 | chr1:26018883-26020058 REVERSE LENGTH=235;; (*ITAG) Solyc05g012120.2.1 (e_value=2e-66) genomic_reference:SL2.40ch05 gene_region:5328775-5332292 transcript_region:SL2.40ch05:5328775..5332292- functional_description:"Ribosome maturation factor rimP (AHRD V1 *-*- RIMP_LEPIN); contains Interpro domain(s) IPR003728 Uncharacterised protein family UPF0090 "; NbS00003607g0012.1 protein AED:0.26 eAED:0.32 QI:0|0.87|0.64|0.94|0.81|0.88|17|0|783; (*GB) gi|189032255|gb|ACD75053.1| (e_value=0.0) Ser/Thr protein kinase [Solanum chacoense];; (*SWP) sp|Q86IX1|DST1_DICDI (e_value=2e-107) Serine/threonine-protein kinase dst1 OS=Dictyostelium discoideum GN=dst1 PE=3 SV=1;; (*TAIR) AT1G69220.1 (e_value=0.0) | Symbols: SIK1 | Protein kinase superfamily protein | chr1:26020298-26026119 REVERSE LENGTH=836;; (*ITAG) Solyc05g012130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5333154-5343576 transcript_region:SL2.40ch05:5333154..5343576- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003607g0014.1 protein AED:0.48 eAED:0.61 QI:0|0|0|0.5|1|0|2|0|78 NbS00015213g0002.1 protein AED:0.24 eAED:0.56 QI:0|0|0|1|0|0|2|0|72 NbS00011191g0015.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.42|1|0|0|7|283|251; (*GB) gi|242091772|ref|XP_002436376.1| (e_value=7e-73) hypothetical protein SORBIDRAFT_10g001390 [Sorghum bicolor];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-29) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT2G33430.1 (e_value=6e-71) | Symbols: DAL1, DAL | differentiation and greening-like 1 | chr2:14162732-14164729 FORWARD LENGTH=219;; (*ITAG) Solyc05g054960.2.1 (e_value=5e-91) genomic_reference:SL2.40ch05 gene_region:63892360-63895361 transcript_region:SL2.40ch05:63892360..63895361+ functional_description:"DAG protein (AHRD V1 **-- B6TMC1_MAIZE)"; NbS00011191g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|673; (*GB) gi|359488099|ref|XP_002266715.2| (e_value=0.0) PREDICTED: ankyrin repeat domain-containing protein 13B-like [Vitis vinifera];; (*SWP) sp|Q5F259|AN13B_MOUSE (e_value=2e-30) Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1;; (*TAIR) AT3G04470.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:1189841-1191853 REVERSE LENGTH=640;; (*ITAG) Solyc05g054970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63896453-63900703 transcript_region:SL2.40ch05:63896453..63900703- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00011191g0017.1 protein AED:0.19 eAED:0.19 QI:403|1|1|1|0.84|0.78|14|385|543; (*GB) gi|225453066|ref|XP_002269177.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha [Vitis vinifera];; (*SWP) sp|Q06190|P2R3A_HUMAN (e_value=7e-110) Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Homo sapiens GN=PPP2R3A PE=1 SV=1;; (*TAIR) AT5G28850.2 (e_value=0.0) | Symbols: | Calcium-binding EF-hand family protein | chr5:10877360-10881278 REVERSE LENGTH=536;; (*ITAG) Solyc05g054980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63906795-63915747 transcript_region:SL2.40ch05:63906795..63915747- go_terms:GO:0005509 functional_description:"Protein phosphatase 2A regulatory subunit B&apos-like protein (AHRD V1 ***- Q56WJ0_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00056258g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|0.5|1|1|4|0|494; (*GB) gi|224284234|gb|ACN39853.1| (e_value=2e-47) unknown [Picea sitchensis];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=2e-35) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT4G26650.2 (e_value=3e-47) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13445265-13447592 FORWARD LENGTH=452;; (*ITAG) Solyc02g064540.1.1 (e_value=1e-81) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30239068-30241420 transcript_region:SL2.40ch02:30239068..30241420- go_terms:GO:0008266,GO:0003729 functional_description:"RNA-binding protein (AHRD V1 *--* B6TAS3_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266,GO:0003729 NbS00001284g0001.1 protein AED:0.02 eAED:0.02 QI:168|0|0.5|1|0|0.5|2|115|80; (*GB) gi|10798746|dbj|BAB16425.1| (e_value=3e-14) glycine rich protein [Nicotiana tabacum];; (*SWP) sp|P23137|GRP1_TOBAC (e_value=9e-16) Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1; NbS00001284g0002.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|132 NbS00001284g0013.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|272 NbS00015609g0003.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|225426506|ref|XP_002271695.1| (e_value=2e-94) PREDICTED: B3 domain-containing protein Os03g0120900-like [Vitis vinifera];; (*SWP) sp|Q6EU30|Y2835_ORYSJ (e_value=1e-67) B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1;; (*TAIR) AT2G46870.1 (e_value=1e-67) | Symbols: NGA1 | AP2/B3-like transcriptional factor family protein | chr2:19261313-19262245 FORWARD LENGTH=310;; (*ITAG) Solyc08g013690.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3060068-3061042 transcript_region:SL2.40ch08:3060068..3061042+ go_terms:GO:0003700 functional_description:"Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00015609g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|184 NbS00015609g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|369; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-51) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00015609g0009.1 protein AED:0.31 eAED:0.31 QI:0|1|0.75|1|0.33|0.5|4|0|244; (*GB) gi|225429807|ref|XP_002282879.1| (e_value=2e-107) PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Vitis vinifera];; (*SWP) sp|Q941D3|PAP8_ARATH (e_value=3e-91) Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1;; (*TAIR) AT5G19940.1 (e_value=3e-92) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739693-6740661 FORWARD LENGTH=239;; (*ITAG) Solyc08g006160.2.1 (e_value=4e-146) genomic_reference:SL2.40ch08 gene_region:880634-883706 transcript_region:SL2.40ch08:880634..883706- go_terms:GO:0009507 functional_description:"Plastid fibrillin 3 (Fragment) (AHRD V1 **-- A6XBK9_COFCA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00006716g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.5|1|1|1|4|0|553; (*GB) gi|122239909|sp|Q94FM7.2|C71DK_TOBAC (e_value=0.0) RecName: Full=5-epiaristolochene 1,3-dihydroxylase; Short=NtEAH; AltName: Full=Cytochrome P450 71D20;; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=0.0) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26300.1 (e_value=2e-116) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc04g083140.1.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00017742g0001.1 protein AED:0.12 eAED:0.12 QI:291|0.91|0.92|1|0.75|0.61|13|279|329; (*GB) gi|305690311|gb|ADM64536.1| (e_value=0.0) Arp2/3 complex p35 subunit [Nicotiana tabacum];; (*SWP) sp|O96623|ARPC2_DICDI (e_value=2e-37) Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1;; (*TAIR) AT1G30825.1 (e_value=1e-152) | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318;; (*ITAG) Solyc11g068610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50339390-50346971 transcript_region:SL2.40ch11:50339390..50346971+ go_terms:GO:0005200 functional_description:"Actin related protein 2/3 complex subunit 2 (AHRD V1 ***- D8RD91_SELML); contains Interpro domain(s) IPR007188 Arp2/3 complex, 34kDa subunit p34-Arc "; GO:0005200 NbS00017742g0008.1 protein AED:0.17 eAED:0.17 QI:1349|1|1|1|1|1|2|278|173; (*GB) gi|4996349|dbj|BAA78417.1| (e_value=1e-115) NAC-domain protein [Nicotiana tabacum];; (*SWP) sp|Q9FMR3|NAC90_ARATH (e_value=1e-58) NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1;; (*TAIR) AT5G22380.1 (e_value=9e-60) | Symbols: anac090, NAC090 | NAC domain containing protein 90 | chr5:7408924-7410038 REVERSE LENGTH=235;; (*ITAG) Solyc11g068620.1.1 (e_value=7e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50350576-50352818 transcript_region:SL2.40ch11:50350576..50352818- go_terms:GO:0045449 functional_description:"NAC-domain protein (AHRD V1 ***- Q9SXQ0_TOBAC); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00019106g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|625; (*GB) gi|359486044|ref|XP_002269662.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Vitis vinifera];; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=1e-166) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=1e-167) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc01g104090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84319648-84321791 transcript_region:SL2.40ch01:84319648..84321791- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9F5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019106g0013.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.33|1|0.6|0.83|6|0|569; (*GB) gi|225447998|ref|XP_002270419.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 8-like [Vitis vinifera];; (*SWP) sp|Q8RY89|PI5K8_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=2 SV=1;; (*TAIR) AT1G60890.1 (e_value=0.0) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr1:22412452-22416338 REVERSE LENGTH=769;; (*ITAG) Solyc01g104140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84370683-84378111 transcript_region:SL2.40ch01:84370683..84378111+ go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7KLK6_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00019106g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.57|0.85|1|0.85|7|0|478; (*GB) gi|225447996|ref|XP_002270229.1| (e_value=2e-172) PREDICTED: uncharacterized protein LOC100256702 [Vitis vinifera];; (*SWP) sp|Q66JG8|ALKB5_XENTR (e_value=2e-15) Probable alpha-ketoglutarate-dependent dioxygenase ABH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1;; (*TAIR) AT4G36090.2 (e_value=1e-128) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:17078376-17080185 REVERSE LENGTH=452;; (*ITAG) Solyc01g104130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84359045-84362365 transcript_region:SL2.40ch01:84359045..84362365+ go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family protein-like (AHRD V1 *--- Q5VPG6_ORYSJ); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00019106g0015.1 protein AED:0.26 eAED:0.26 QI:240|0.83|0.71|1|0.66|0.57|7|0|305; (*GB) gi|147837083|emb|CAN77049.1| (e_value=5e-173) hypothetical protein VITISV_039116 [Vitis vinifera];; (*TAIR) AT1G71190.1 (e_value=6e-153) | Symbols: SAG18 | senescence associated gene 18 | chr1:26833597-26834982 REVERSE LENGTH=281;; (*ITAG) Solyc01g104080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84314301-84318754 transcript_region:SL2.40ch01:84314301..84318754+ functional_description:"Hypothetical membrane spanning protein (AHRD V1 ***- A9KCV4_COXBN)"; NbS00036992g0001.1 protein AED:0.13 eAED:0.39 QI:0|0|0|1|0|0|4|0|131; (*ITAG) Solyc01g005040.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:55810-56888 transcript_region:SL2.40ch01:55810..56888+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00018495g0009.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|176; (*GB) gi|350539429|ref|NP_001234393.1| (e_value=4e-53) tousled-like protein [Solanum lycopersicum];; (*ITAG) Solyc11g071680.1.1 (e_value=8e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52162376-52174213 transcript_region:SL2.40ch11:52162376..52174213- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D0LX30_HALO1); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00046049g0004.1 protein AED:0.26 eAED:0.26 QI:467|0.5|0.55|1|0.5|0.55|9|695|495; (*GB) gi|255567234|ref|XP_002524598.1| (e_value=1e-86) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SSE5|COL9_ARATH (e_value=9e-64) Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1;; (*TAIR) AT3G07650.4 (e_value=7e-65) | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-2443901 FORWARD LENGTH=372;; (*ITAG) Solyc05g020020.2.1 (e_value=2e-146) genomic_reference:SL2.40ch05 gene_region:25874229-25879668 transcript_region:SL2.40ch05:25874229..25879668- go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005515,GO:0003700 NbS00036359g0005.1 protein AED:0.38 eAED:0.38 QI:66|0|0.25|0.75|1|1|4|0|196; (*GB) gi|147790114|emb|CAN65460.1| (e_value=3e-85) hypothetical protein VITISV_002196 [Vitis vinifera];; (*SWP) sp|Q9C9X3|ANXD5_ARATH (e_value=4e-53) Annexin D5 OS=Arabidopsis thaliana GN=ANN5 PE=2 SV=2;; (*TAIR) AT1G68090.1 (e_value=3e-54) | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442-25520774 REVERSE LENGTH=316;; (*ITAG) Solyc04g078820.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:61081296-61085434 transcript_region:SL2.40ch04:61081296..61085434+ go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00012361g0032.1 protein AED:0.03 eAED:0.04 QI:68|0.55|0.2|0.9|0.77|0.7|10|0|1648; (*GB) gi|302143889|emb|CBI22750.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G52290.1 (e_value=3e-170) | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21230353-21236554 REVERSE LENGTH=1594;; (*ITAG) Solyc03g025820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7591561-7601490 transcript_region:SL2.40ch03:7591561..7601490+ functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 ***- Q9FHD0_ARATH)"; NbS00012361g0023.1 protein AED:0.12 eAED:0.12 QI:156|1|1|1|0.5|0.6|5|587|260; (*GB) gi|255539441|ref|XP_002510785.1| (e_value=1e-90) actin depolymerizing factor, putative [Ricinus communis];; (*SWP) sp|Q9HFF2|YL92_SCHPO (e_value=3e-24) Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC683.02c PE=2 SV=1;; (*TAIR) AT5G52380.1 (e_value=2e-85) | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:21261521-21263061 REVERSE LENGTH=268;; (*ITAG) Solyc03g025740.2.1 (e_value=9e-130) genomic_reference:SL2.40ch03 gene_region:7524726-7528765 transcript_region:SL2.40ch03:7524726..7528765+ go_terms:GO:0008270 functional_description:"CCHC zinc finger protein (AHRD V1 *--- Q9GRG8_9TRYP); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00012361g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|154; (*GB) gi|356559811|ref|XP_003548190.1| (e_value=5e-58) PREDICTED: uncharacterized protein LOC100802676 isoform 1 [Glycine max];; (*TAIR) AT3G48970.1 (e_value=1e-47) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:18152408-18153296 REVERSE LENGTH=140;; (*ITAG) Solyc03g025790.2.1 (e_value=3e-75) genomic_reference:SL2.40ch03 gene_region:7560994-7562401 transcript_region:SL2.40ch03:7560994..7562401+ go_terms:GO:0005515,GO:0005507 functional_description:"Metal ion binding protein (AHRD V1 **-* B6SL50_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515,GO:0005507 NbS00012361g0024.1 protein AED:0.33 eAED:0.36 QI:18|1|0.5|1|1|1|2|0|130; (*GB) gi|22857912|gb|AAL91666.1| (e_value=3e-89) pollen specific actin-depolymerizing factor 1 [Nicotiana tabacum];; (*SWP) sp|Q67ZM4|ADF7_ARATH (e_value=3e-81) Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1;; (*TAIR) AT4G25590.1 (e_value=2e-82) | Symbols: ADF7 | actin depolymerizing factor 7 | chr4:13059137-13060050 REVERSE LENGTH=137;; (*ITAG) Solyc06g035980.2.1 (e_value=4e-83) genomic_reference:SL2.40ch06 gene_region:22031465-22032402 transcript_region:SL2.40ch06:22031465..22032402+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00012361g0029.1 protein AED:0.06 eAED:0.06 QI:250|0.85|0.75|1|1|1|8|214|961; (*GB) gi|302143890|emb|CBI22751.3| (e_value=4e-168) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G63300.1 (e_value=2e-118) | Symbols: | Myosin heavy chain-related protein | chr1:23482193-23486067 FORWARD LENGTH=1029;; (*ITAG) Solyc03g025830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7602707-7608900 transcript_region:SL2.40ch03:7602707..7608900- functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ)"; NbS00012361g0028.1 protein AED:0.03 eAED:0.07 QI:0|0.5|0.2|1|1|1|5|0|627; (*GB) gi|27529824|dbj|BAC53927.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q04980|LTI65_ARATH (e_value=2e-26) Low-temperature-induced 65 kDa protein OS=Arabidopsis thaliana GN=LTI65 PE=2 SV=2;; (*TAIR) AT5G52300.2 (e_value=1e-27) | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237205-21239404 FORWARD LENGTH=618;; (*ITAG) Solyc03g025810.2.1 (e_value=1e-147) genomic_reference:SL2.40ch03 gene_region:7587879-7590347 transcript_region:SL2.40ch03:7587879..7590347- functional_description:"Low-temperature-induced 65 kDa protein (AHRD V1 *--- LTI65_ARATH); contains Interpro domain(s) IPR012418 CAP160 "; NbS00012361g0027.1 protein AED:0.24 eAED:0.27 QI:0|0.63|0.41|1|0.72|0.66|12|212|877; (*GB) gi|332071136|gb|AED99886.1| (e_value=0.0) glycosyltransferase [Panax notoginseng];; (*SWP) sp|B0X1Q4|RUMI_CULQU (e_value=6e-25) O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1;; (*TAIR) AT5G23850.1 (e_value=0.0) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH=542;; (*ITAG) Solyc03g025760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7530681-7535061 transcript_region:SL2.40ch03:7530681..7535061- functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8RT95_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00025471g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|638; (*GB) gi|351727583|ref|NP_001235886.1| (e_value=0.0) circadian clock-associated FKF1 [Glycine max];; (*SWP) sp|Q9C9W9|ADO3_ARATH (e_value=0.0) Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1;; (*TAIR) AT1G68050.1 (e_value=0.0) | Symbols: ADO3, FKF1 | flavin-binding, kelch repeat, f box 1 | chr1:25508737-25510697 FORWARD LENGTH=619;; (*ITAG) Solyc01g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:216655-221730 transcript_region:SL2.40ch01:216655..221730+ go_terms:GO:0005515 functional_description:"Flavin-binding kelch domain F box protein (AHRD V1 **-* D7KVS5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00053389g0004.1 protein AED:0.22 eAED:0.22 QI:204|1|1|1|0.5|0.66|3|420|98; (*GB) gi|225463848|ref|XP_002265262.1| (e_value=5e-45) PREDICTED: uncharacterized protein LOC100244941 [Vitis vinifera];; (*TAIR) AT1G04770.1 (e_value=1e-38) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1336564-1337767 REVERSE LENGTH=303;; (*ITAG) Solyc09g091600.2.1 (e_value=2e-51) genomic_reference:SL2.40ch09 gene_region:66193989-66196501 transcript_region:SL2.40ch09:66193989..66196501+ go_terms:GO:0005488 functional_description:"Male sterility MS5 family protein (AHRD V1 **-- D7KE75_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00053389g0007.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.4|1|0.75|0.6|5|0|241; (*GB) gi|301557932|gb|ADK78986.1| (e_value=8e-136) VAMP721 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9MAS5|VA726_ARATH (e_value=1e-121) Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2;; (*TAIR) AT1G04760.1 (e_value=1e-122) | Symbols: ATVAMP726, VAMP726 | vesicle-associated membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=220;; (*ITAG) Solyc09g091610.2.1 (e_value=9e-134) genomic_reference:SL2.40ch09 gene_region:66196968-66199642 transcript_region:SL2.40ch09:66196968..66199642- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00001030g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|2500717|sp|Q41495.1|ST14_SOLTU (e_value=6e-61) RecName: Full=STS14 protein; Flags: Precursor;; (*SWP) sp|Q41495|ST14_SOLTU (e_value=2e-62) STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1;; (*TAIR) AT5G66590.1 (e_value=1e-55) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr5:26574255-26574812 FORWARD LENGTH=185;; (*ITAG) Solyc02g065470.1.1 (e_value=5e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31198798-31199340 transcript_region:SL2.40ch02:31198798..31199340+ go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 ***- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00001030g0010.1 protein AED:0.06 eAED:0.06 QI:577|0.76|0.71|0.92|0.69|0.71|14|0|771; (*GB) gi|359495780|ref|XP_003635088.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853414 [Vitis vinifera];; (*TAIR) AT5G66600.3 (e_value=0.0) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26578315 REVERSE LENGTH=614;; (*ITAG) Solyc02g089980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46247120-46250736 transcript_region:SL2.40ch02:46247120..46250736+ functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00001030g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|147; (*GB) gi|225468755|ref|XP_002274634.1| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100255767 [Vitis vinifera];; (*TAIR) AT2G23690.1 (e_value=9e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=2e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00057509g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|381; (*GB) gi|147792812|emb|CAN68806.1| (e_value=3e-39) hypothetical protein VITISV_001078 [Vitis vinifera];; (*TAIR) AT4G17410.1 (e_value=2e-30) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr4:9716360-9721642 FORWARD LENGTH=826;; (*ITAG) Solyc03g025260.1.1 (e_value=7e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7083255-7084370 transcript_region:SL2.40ch03:7083255..7084370+ go_terms:GO:0005634,GO:0008270 functional_description:"Retinoblastoma-binding protein (AHRD V1 *--- C0P1B5_AJECG); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0008270 NbS00002499g0007.1 protein AED:0.22 eAED:0.19 QI:0|0.36|0.25|0.83|0.81|0.75|12|0|597; (*GB) gi|359475380|ref|XP_002282068.2| (e_value=2e-78) PREDICTED: B3 domain-containing protein Os01g0234100-like [Vitis vinifera];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=6e-44) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=2e-37) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc06g034140.1.1 (e_value=3e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20397157-20399301 transcript_region:SL2.40ch06:20397157..20399301- go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os01g0234100 (AHRD V1 ***- Y1341_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00039694g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.91|0.88|1|0.83|0.88|25|391|1115; (*GB) gi|225427728|ref|XP_002265593.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253714 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=7e-108) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G39050.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc10g054080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50032317-50042929 transcript_region:SL2.40ch10:50032317..50042929- go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00031489g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.7|0.76|0.95|0.7|0.61|21|205|642; (*GB) gi|297746269|emb|CBI16325.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28320.1 (e_value=0.0) | Symbols: | Pleckstrin homology (PH) and lipid-binding START domains-containing protein | chr2:12095161-12099424 FORWARD LENGTH=737;; (*ITAG) Solyc11g069530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51224817-51234971 transcript_region:SL2.40ch11:51224817..51234971- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00013064g0004.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|1|1|2|0|107; (*GB) gi|257831445|gb|ACV71023.1| (e_value=1e-25) UPA24 [Capsicum annuum];; (*ITAG) Solyc07g065460.1.1 (e_value=5e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64428630-64428974 transcript_region:SL2.40ch07:64428630..64428974- functional_description:"UPA24 (AHRD V1 *-*- C8YZB6_CAPAN)"; NbS00013064g0008.1 protein AED:0.41 eAED:0.52 QI:19|0.2|0.33|1|0.8|1|6|0|108; (*ITAG) Solyc07g065440.2.1 (e_value=3e-36) genomic_reference:SL2.40ch07 gene_region:64417269-64419854 transcript_region:SL2.40ch07:64417269..64419854- go_terms:GO:0005694 functional_description:"Meiotic recombination protein SPO11 (AHRD V1 ***- B6TWI5_MAIZE); contains Interpro domain(s) IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal "; GO:0005694 NbS00013064g0009.1 protein AED:0.13 eAED:0.15 QI:0|0.33|0.25|1|0.33|0.5|4|433|365; (*GB) gi|3378661|emb|CAA73483.1| (e_value=0.0) putative outward rectifying potassium channel StKCO1a [Solanum tuberosum];; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=1e-122) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=9e-124) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc07g065450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64424168-64425782 transcript_region:SL2.40ch07:64424168..64425782+ go_terms:GO:0015271,GO:0015269 functional_description:"Calcium-activated outward-rectifying potassium channel 1 (AHRD V1 **** B6TSL7_MAIZE); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00027357g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|334; (*GB) gi|359497469|ref|XP_003635528.1| (e_value=9e-58) PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=6e-29) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc03g032230.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9028748-9029764 transcript_region:SL2.40ch03:9028748..9029764+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00027357g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.42|0|1|0.42|0.5|8|0|794; (*GB) gi|296084012|emb|CBI24400.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SAK8|CHX2_ARATH (e_value=0.0) Cation/H(+) antiporter 2 OS=Arabidopsis thaliana GN=CHX2 PE=2 SV=1;; (*TAIR) AT1G79400.1 (e_value=0.0) | Symbols: ATCHX2, CHX2 | cation/H+ exchanger 2 | chr1:29864992-29867840 FORWARD LENGTH=783;; (*ITAG) Solyc03g032240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9045423-9049866 transcript_region:SL2.40ch03:9045423..9049866- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 2 (AHRD V1 **** CHX2_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00027357g0010.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|67; (*ITAG) Solyc03g032230.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9028748-9029764 transcript_region:SL2.40ch03:9028748..9029764+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00006107g0001.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|2|0|275; (*GB) gi|357521321|ref|XP_003630949.1| (e_value=4e-156) 40S ribosomal protein S2 [Medicago truncatula];; (*SWP) sp|Q93VB8|RS22_ARATH (e_value=2e-150) 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1;; (*TAIR) AT1G58684.1 (e_value=1e-151) | Symbols: | Ribosomal protein S5 family protein | chr1:21770021-21771217 REVERSE LENGTH=284;; (*ITAG) Solyc04g074300.2.1 (e_value=3e-169) genomic_reference:SL2.40ch04 gene_region:57894185-57896333 transcript_region:SL2.40ch04:57894185..57896333+ go_terms:GO:0003735 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- C5K1T7_AJEDS); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal "; GO:0003735 NbS00005373g0016.1 protein AED:0.03 eAED:0.03 QI:35|0.88|0.9|1|0.88|0.8|10|49|457; (*GB) gi|213495900|gb|ACJ49170.1| (e_value=0.0) protection of telomeres 1 protein [Nicotiana tabacum];; (*SWP) sp|Q56Y52|POT1A_ARATH (e_value=1e-77) Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A PE=1 SV=1;; (*TAIR) AT2G05210.3 (e_value=9e-79) | Symbols: AtPOT1a | Nucleic acid-binding, OB-fold-like protein | chr2:1891814-1894196 FORWARD LENGTH=467;; (*ITAG) Solyc02g070300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34660820-34669876 transcript_region:SL2.40ch02:34660820..34669876+ go_terms:GO:0000784 functional_description:"Protection of telomeres 1 protein (AHRD V1 ***- B7T1K5_SOLTU); contains Interpro domain(s) IPR011564 Telomere end binding protein "; GO:0000784 NbS00005373g0013.1 protein AED:0.15 eAED:0.15 QI:159|0.83|0.71|1|1|1|7|415|568; (*GB) gi|225457648|ref|XP_002275451.1| (e_value=5e-151) PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera];; (*SWP) sp|Q84JG2|SWI3B_ARATH (e_value=2e-119) SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1;; (*TAIR) AT2G33610.1 (e_value=2e-120) | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 | chr2:14229023-14231149 FORWARD LENGTH=469;; (*ITAG) Solyc04g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63911634-63915550 transcript_region:SL2.40ch04:63911634..63915550- go_terms:GO:0042802 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_MOUSE); contains Interpro domain(s) IPR007526 SWIRM "; GO:0042802 NbS00027083g0003.1 protein AED:0.03 eAED:0.03 QI:99|1|1|1|1|1|3|206|595; (*GB) gi|4887010|gb|AAD32141.1|AF123503_1 (e_value=0.0) Nt-gh3 deduced protein [Nicotiana tabacum];; (*SWP) sp|O82333|GH31_ARATH (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1;; (*TAIR) AT2G14960.1 (e_value=0.0) | Symbols: GH3.1 | Auxin-responsive GH3 family protein | chr2:6451659-6453670 REVERSE LENGTH=590;; (*ITAG) Solyc01g107390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86709599-86711996 transcript_region:SL2.40ch01:86709599..86711996- functional_description:"Auxin-responsive GH3 product (AHRD V1 ***- Q05680_SOYBN); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; NbS00028930g0001.1 protein AED:0.11 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|399; (*GB) gi|225446948|ref|XP_002267468.1| (e_value=1e-95) PREDICTED: ethylene-responsive transcription factor ERF054-like [Vitis vinifera];; (*SWP) sp|Q9SKT1|ERF53_ARATH (e_value=1e-55) Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1;; (*TAIR) AT2G20880.1 (e_value=9e-57) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:8986053-8987063 FORWARD LENGTH=336;; (*ITAG) Solyc07g054220.1.1 (e_value=1e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59897642-59898814 transcript_region:SL2.40ch07:59897642..59898814- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00005810g0016.1 protein AED:0.02 eAED:0.02 QI:86|0.75|0.8|1|0.5|0.4|5|309|504; (*GB) gi|356512825|ref|XP_003525116.1| (e_value=5e-86) PREDICTED: uncharacterized protein LOC100783348 [Glycine max];; (*TAIR) AT1G74860.1 (e_value=5e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123432-28125600 FORWARD LENGTH=400;; (*ITAG) Solyc03g113660.2.1 (e_value=6e-159) genomic_reference:SL2.40ch03 gene_region:57790465-57793218 transcript_region:SL2.40ch03:57790465..57793218+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005810g0021.1 protein AED:0.41 eAED:0.51 QI:204|0|0.5|1|1|1|2|0|68; (*GB) gi|224119196|ref|XP_002318011.1| (e_value=5e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g113670.2.1 (e_value=2e-24) genomic_reference:SL2.40ch03 gene_region:57795480-57797059 transcript_region:SL2.40ch03:57795480..57797059+ functional_description:"AT3g47831/T23J7 (AHRD V1 ***- Q94F43_ARATH)"; NbS00005810g0005.1 protein AED:0.09 eAED:0.10 QI:302|0.66|0.25|1|1|1|4|0|685; (*GB) gi|225457188|ref|XP_002280600.1| (e_value=0.0) PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=1e-32) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT5G62580.1 (e_value=1e-122) | Symbols: | ARM repeat superfamily protein | chr5:25120010-25122259 FORWARD LENGTH=615;; (*ITAG) Solyc03g113680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57797860-57801879 transcript_region:SL2.40ch03:57797860..57801879- go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 **-- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00005810g0023.1 protein AED:0.35 eAED:0.35 QI:443|0.8|0.81|0.93|0.8|0.68|16|0|795; (*GB) gi|296081481|emb|CBI20004.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q641I1|F135B_XENLA (e_value=5e-43) Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1;; (*TAIR) AT1G09980.1 (e_value=0.0) | Symbols: | Putative serine esterase family protein | chr1:3256541-3260866 REVERSE LENGTH=802;; (*ITAG) Solyc03g113640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57764983-57777016 transcript_region:SL2.40ch03:57764983..57777016- functional_description:"IP15632p (Fragment) (AHRD V1 *--- Q1WWF1_DROME); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00005810g0006.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|1|1|4|478|628; (*GB) gi|297733858|emb|CBI15105.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7Q2|PP124_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1;; (*TAIR) AT1G74850.1 (e_value=0.0) | Symbols: PTAC2 | plastid transcriptionally active 2 | chr1:28119237-28122314 REVERSE LENGTH=862;; (*ITAG) Solyc03g113630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57759710-57764210 transcript_region:SL2.40ch03:57759710..57764210- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006340g0002.1 protein AED:0.17 eAED:0.19 QI:15|0|0|1|0|0|3|0|210; (*GB) gi|269974842|gb|ACZ55218.1| (e_value=4e-113) S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase [Nicotiana suaveolens];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=5e-48) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT5G04380.1 (e_value=2e-41) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1234883-1236317 FORWARD LENGTH=385;; (*ITAG) Solyc04g055260.2.1 (e_value=3e-85) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00011616g0004.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|356600304|gb|AET22503.1| (e_value=3e-47) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=3e-26) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc07g009180.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00011616g0009.1 protein AED:0.33 eAED:0.33 QI:0|1|0.66|1|0.5|0.66|3|925|361; (*GB) gi|367465855|gb|AEX15600.1| (e_value=9e-166) YUC-like protein 1 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=3e-150) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=3e-151) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc09g064160.2.1 (e_value=2e-169) genomic_reference:SL2.40ch09 gene_region:56854505-56856027 transcript_region:SL2.40ch09:56854505..56856027- go_terms:GO:0004499 functional_description:"Flavin monooxygenase-like protein (AHRD V1 **** D2IGV4_SOLLC); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004499 NbS00011616g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|364285559|gb|AEW48197.1| (e_value=3e-79) disease resistance protein RGH3 [Solanum x edinense];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=1e-56) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=9e-42) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc07g009180.1.1 (e_value=5e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00011616g0011.1 protein AED:0.48 eAED:0.84 QI:0|0|0|1|1|1|2|0|63 NbS00011616g0010.1 protein AED:0.50 eAED:0.68 QI:0|0.75|0.4|1|1|1|5|0|272; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=6e-80) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=5e-60) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=4e-61) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g007110.2.1 (e_value=1e-97) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00044832g0001.1 protein AED:0.17 eAED:0.17 QI:425|0.71|0.62|0.87|0.85|0.75|8|0|239; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=8e-37) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbC24305910g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|101; (*GB) gi|12643758|sp|Q40565.1|RCA2_TOBAC (e_value=6e-65) RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2; Flags: Precursor;; (*SWP) sp|Q40565|RCA2_TOBAC (e_value=2e-66) Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1;; (*TAIR) AT2G39730.3 (e_value=5e-49) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441;; (*ITAG) Solyc10g086580.1.1 (e_value=1e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64688483-64690961 transcript_region:SL2.40ch10:64688483..64690961- go_terms:GO:0005524 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 ***- Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524 NbC26213959g0006.1 protein AED:0.14 eAED:0.15 QI:361|0.33|0.5|1|0.33|0.25|4|589|182; (*GB) gi|225427623|ref|XP_002269579.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100266552 [Vitis vinifera];; (*TAIR) AT4G19370.1 (e_value=3e-30) | Symbols: | Protein of unknown function (DUF1218) | chr4:10566263-10567535 REVERSE LENGTH=217;; (*ITAG) Solyc08g075290.1.1 (e_value=5e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56552194-56553563 transcript_region:SL2.40ch08:56552194..56553563+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00059182g0001.1 protein AED:0.24 eAED:0.24 QI:117|1|1|1|0.6|0.5|6|354|112; (*GB) gi|15221191|ref|NP_177567.1| (e_value=7e-71) 60S ribosomal protein L35a-3 [Arabidopsis thaliana];; (*SWP) sp|Q9C912|R35A3_ARATH (e_value=2e-72) 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1;; (*TAIR) AT1G74270.1 (e_value=2e-73) | Symbols: | Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112;; (*ITAG) Solyc05g052800.2.1 (e_value=7e-69) genomic_reference:SL2.40ch05 gene_region:62130017-62132095 transcript_region:SL2.40ch05:62130017..62132095- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35a (AHRD V1 ***- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae "; GO:0003735 NbS00007237g0027.1 protein AED:0.32 eAED:0.44 QI:0|0|0.33|1|0|0|3|0|209; (*GB) gi|57013965|ref|YP_173437.1| (e_value=2e-36) hypothetical protein NitaMp099 [Nicotiana tabacum]; NbS00007237g0005.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|57013963|ref|YP_173435.1| (e_value=6e-101) hypothetical protein NitaMp096 [Nicotiana tabacum];; (*SWP) sp|P93318|M660_ARATH (e_value=2e-44) Uncharacterized mitochondrial protein AtMg00660 OS=Arabidopsis thaliana GN=AtMg00660 PE=4 SV=1;; (*ITAG) ATMG00660.1 (e_value=2e-45) | Symbols: ORF149 | hypothetical protein | chrM:190104-190553 REVERSE LENGTH=149;; (*ITAG) Solyc00g025290.1.1 (e_value=6e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12269558-12270043 transcript_region:SL2.40ch00:12269558..12270043+ functional_description:"Hypothetical protein (nad5 intron) (AHRD V1 **-- Q7M2D8_WHEAT)"; NbS00007237g0026.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.66|0|0|3|0|204; (*GB) gi|57013966|ref|YP_173438.1| (e_value=9e-43) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00007237g0031.1 protein AED:0.21 eAED:0.51 QI:48|0|0|1|0|0|2|0|109; (*GB) gi|57013974|ref|YP_173446.1| (e_value=2e-41) hypothetical protein NitaMp108 [Nicotiana tabacum]; NbS00007237g0029.1 protein AED:0.09 eAED:0.27 QI:0|0|0|1|0|0|2|0|108; (*GB) gi|57013968|ref|YP_173440.1| (e_value=2e-36) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00007237g0030.1 protein AED:0.62 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|78 NbS00015407g0013.1 protein AED:0.11 eAED:0.11 QI:285|1|1|1|0.66|0.61|13|500|513; (*GB) gi|225452167|ref|XP_002264334.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera];; (*SWP) sp|B0VX69|SETD3_CALJA (e_value=1e-17) Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2;; (*TAIR) AT5G14260.2 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr5:4601139-4603873 FORWARD LENGTH=514;; (*ITAG) Solyc02g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32674393-32677699 transcript_region:SL2.40ch02:32674393..32677699- functional_description:"SET domain-containing protein (AHRD V1 ***- D7M620_ARALY); contains Interpro domain(s) IPR001214 SET "; NbS00015407g0012.1 protein AED:0.27 eAED:0.27 QI:569|0.83|0.85|1|1|0.85|7|0|127; (*GB) gi|297737116|emb|CBI26317.3| (e_value=2e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96449|DMC1_SOYBN (e_value=6e-63) Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G22880.1 (e_value=3e-62) | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51) family protein | chr3:8097948-8100740 REVERSE LENGTH=344;; (*ITAG) Solyc09g082790.2.1 (e_value=9e-66) genomic_reference:SL2.40ch09 gene_region:63856759-63860520 transcript_region:SL2.40ch09:63856759..63860520- go_terms:GO:0005515,GO:0005634,GO:0006259,GO:0017111 functional_description:"DNA repair and recombination protein RAD51 (AHRD V1 **-- A9CT16_ENTBH); contains Interpro domain(s) IPR011940 Meiotic recombinase Dmc1 "; GO:0005515,GO:0005634,GO:0006259,GO:0017111 NbS00015407g0005.1 protein AED:0.47 eAED:0.92 QI:0|0|0|1|1|1|2|0|62 NbS00053577g0007.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0.5|0.6|5|0|374; (*GB) gi|302143347|emb|CBI21908.3| (e_value=1e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G44150.1 (e_value=5e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17763797-17765101 REVERSE LENGTH=355;; (*ITAG) Solyc07g053560.2.1 (e_value=8e-128) genomic_reference:SL2.40ch07 gene_region:59299113-59304603 transcript_region:SL2.40ch07:59299113..59304603- functional_description:"Genomic DNA chromosome 5 P1 clone MLN1 (AHRD V1 *-*- Q9FFH4_ARATH)"; NbS00053577g0002.1 protein AED:0.28 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|225462114|ref|XP_002262673.1| (e_value=3e-46) PREDICTED: glutaredoxin-C9-like [Vitis vinifera];; (*SWP) sp|Q9SGP6|GRXC9_ARATH (e_value=2e-44) Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1;; (*TAIR) AT1G28480.1 (e_value=2e-45) | Symbols: GRX480, roxy19 | Thioredoxin superfamily protein | chr1:10013634-10014047 REVERSE LENGTH=137;; (*ITAG) Solyc07g053550.1.1 (e_value=7e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59297758-59298204 transcript_region:SL2.40ch07:59297758..59298204+ go_terms:GO:0005515 functional_description:"Glutaredoxin (AHRD V1 ***- B9HGW6_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0005515 NbS00007413g0014.1 protein AED:0.29 eAED:0.29 QI:153|0.25|0.2|0.4|0.75|0.8|5|0|228; (*GB) gi|225444195|ref|XP_002270180.1| (e_value=9e-40) PREDICTED: alpha N-terminal protein methyltransferase 1-like, partial [Vitis vinifera];; (*SWP) sp|Q5PP70|NTM1_ARATH (e_value=6e-35) Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1;; (*TAIR) AT5G44450.1 (e_value=7e-36) | Symbols: | methyltransferases | chr5:17914360-17916017 REVERSE LENGTH=334;; (*ITAG) Solyc02g021700.2.1 (e_value=8e-55) genomic_reference:SL2.40ch02 gene_region:14281494-14294175 transcript_region:SL2.40ch02:14281494..14294175- go_terms:GO:0005515,GO:0008276 functional_description:"Alpha N-terminal protein methyltransferase 1 (AHRD V1 **** NTM1_ARATH); contains Interpro domain(s) IPR008576 Protein of unknown function DUF858, methyltransferase-like "; GO:0005515,GO:0008276 NbS00007413g0016.1 protein AED:0.28 eAED:0.34 QI:92|1|0.5|1|1|1|2|0|43; (*ITAG) Solyc02g021690.2.1 (e_value=3e-24) genomic_reference:SL2.40ch02 gene_region:14269525-14271967 transcript_region:SL2.40ch02:14269525..14271967- go_terms:GO:0008168 functional_description:"Methyltransferase-like protein 11A (AHRD V1 ***- D3PG00_9MAXI); contains Interpro domain(s) IPR008576 Protein of unknown function DUF858, methyltransferase-like "; GO:0008168 NbS00007413g0015.1 protein AED:0.39 eAED:0.52 QI:58|0.5|0.66|1|0|0.66|3|61|32 NbS00007413g0017.1 protein AED:0.47 eAED:0.79 QI:89|1|0.5|1|1|1|2|0|286; (*GB) gi|225444019|ref|XP_002281594.1| (e_value=1e-19) PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Vitis vinifera];; (*ITAG) Solyc02g021760.2.1 (e_value=7e-44) genomic_reference:SL2.40ch02 gene_region:14319129-14335346 transcript_region:SL2.40ch02:14319129..14335346- go_terms:GO:0005516,GO:0003723 functional_description:"mRNA 3&apos-end-processing protein yth1 (AHRD V1 *--- B2WC08_PYRTR); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005516,GO:0003723 NbS00057955g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|0.6|1|1|1|5|0|389; (*GB) gi|37625025|gb|AAQ96336.1| (e_value=0.0) ribosomal protein L3B [Nicotiana tabacum];; (*SWP) sp|P35684|RL3_ORYSJ (e_value=0.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G61580.1 (e_value=0.0) | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720833-22722402 REVERSE LENGTH=390;; (*ITAG) Solyc01g103510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83859723-83864398 transcript_region:SL2.40ch01:83859723..83864398- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3-like (AHRD V1 ***- Q2VCJ2_SOLTU); contains Interpro domain(s) IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00010071g0005.1 protein AED:0.13 eAED:0.18 QI:0|1|0.66|1|1|1|9|0|530; (*GB) gi|296082228|emb|CBI21233.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B9DGD6|ACS_ARATH (e_value=0.0) Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1;; (*TAIR) AT5G36880.2 (e_value=0.0) | Symbols: ACS | acetyl-CoA synthetase | chr5:14534961-14540296 REVERSE LENGTH=743;; (*ITAG) Solyc07g017860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8204531-8209762 transcript_region:SL2.40ch07:8204531..8209762+ go_terms:GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- Q2J3D0_RHOP2); contains Interpro domain(s) IPR011904 Acetate--CoA ligase "; GO:0003987 NbS00008136g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.81|0.73|0.95|0.81|0.78|23|0|765; (*GB) gi|297743083|emb|CBI35950.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93042|RHD3_ARATH (e_value=0.0) Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1;; (*TAIR) AT3G13870.1 (e_value=0.0) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802;; (*ITAG) Solyc12g044900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45698218-45706936 transcript_region:SL2.40ch12:45698218..45706936+ functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; NbS00000634g0009.1 protein AED:0.23 eAED:0.25 QI:0|1|0.71|1|1|1|7|0|653; (*GB) gi|296081168|emb|CBI18194.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NX27|F188A_XENTR (e_value=1e-42) Protein FAM188A OS=Xenopus tropicalis GN=fam188a PE=2 SV=1;; (*TAIR) AT1G43690.1 (e_value=0.0) | Symbols: | ubiquitin interaction motif-containing protein | chr1:16478519-16482589 FORWARD LENGTH=599;; (*ITAG) Solyc04g071320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55840139-55850060 transcript_region:SL2.40ch04:55840139..55850060- functional_description:"Protein FAM188A (AHRD V1 **-- F188A_BOVIN); contains Interpro domain(s) IPR003903 Ubiquitin interacting motif "; NbS00000634g0002.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|1|1|3|0|145; (*GB) gi|225445778|ref|XP_002274987.1| (e_value=1e-43) PREDICTED: CDK-activating kinase assembly factor MAT1 [Vitis vinifera];; (*TAIR) AT4G30820.3 (e_value=4e-28) | Symbols: | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related | chr4:15007144-15008378 FORWARD LENGTH=178;; (*ITAG) Solyc04g071310.2.1 (e_value=8e-69) genomic_reference:SL2.40ch04 gene_region:55829770-55839724 transcript_region:SL2.40ch04:55829770..55839724+ go_terms:GO:0005515 functional_description:"CDK-activating kinase assembly factor MAT1 family protein expressed (AHRD V1 ***- Q2R4I6_ORYSJ); contains Interpro domain(s) IPR004575 Cdk-activating kinase assembly factor (MAT1) "; GO:0005515 NbS00000634g0108.1 protein AED:0.08 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|405 NbS00000634g0101.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|136 NbS00000634g0102.1 protein AED:0.15 eAED:0.17 QI:0|1|0.5|1|0|0|2|104|420 NbS00000634g0116.1 protein AED:0.17 eAED:0.17 QI:112|0.25|0.4|0.8|0.75|0.6|5|825|1110 NbS00025139g0001.1 protein AED:0.33 eAED:0.33 QI:341|1|1|1|0.87|0.77|9|464|213; (*GB) gi|356460909|ref|NP_001239047.1| (e_value=3e-147) calcineurin B-like 1 [Solanum lycopersicum];; (*SWP) sp|O81445|CNBL1_ARATH (e_value=7e-133) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.1 (e_value=5e-134) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g077770.2.1 (e_value=5e-150) genomic_reference:SL2.40ch08 gene_region:58838680-58845331 transcript_region:SL2.40ch08:58838680..58845331- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00026509g0007.1 protein AED:0.05 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|515; (*GB) gi|27151498|sp|Q9SBQ9.1|F3PH_PETHY (e_value=0.0) RecName: Full=Flavonoid 3'-monooxygenase; AltName: Full=Cytochrome P450 75B2; AltName: Full=Flavonoid 3'-hydroxylase;; (*SWP) sp|Q9SBQ9|F3PH_PETHY (e_value=0.0) Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1;; (*TAIR) AT5G07990.1 (e_value=0.0) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g115220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59054788-59060217 transcript_region:SL2.40ch03:59054788..59060217- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026509g0010.1 protein AED:0.37 eAED:0.37 QI:130|1|1|1|0.66|0.75|4|217|181; (*GB) gi|225457225|ref|XP_002284112.1| (e_value=5e-58) PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3 [Vitis vinifera];; (*SWP) sp|Q9SD84|E13L3_ARATH (e_value=7e-39) Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1;; (*TAIR) AT1G18650.1 (e_value=3e-47) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc03g115200.2.1 (e_value=3e-77) genomic_reference:SL2.40ch03 gene_region:59049950-59054055 transcript_region:SL2.40ch03:59049950..59054055- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00052850g0003.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|166; (*GB) gi|225447292|ref|XP_002273713.1| (e_value=5e-45) PREDICTED: glutamate receptor 3.7 [Vitis vinifera];; (*SWP) sp|Q9SDQ4|GLR37_ARATH (e_value=7e-38) Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2;; (*TAIR) AT2G32400.1 (e_value=5e-39) | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate receptor 5 | chr2:13752665-13756233 REVERSE LENGTH=921;; (*ITAG) Solyc07g052390.2.1 (e_value=1e-45) genomic_reference:SL2.40ch07 gene_region:58227013-58231762 transcript_region:SL2.40ch07:58227013..58231762+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9GU65_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00044079g0001.1 protein AED:0.48 eAED:0.52 QI:0|0|0|0.4|1|1|5|0|94; (*ITAG) Solyc04g025430.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:20486364-20488334 transcript_region:SL2.40ch04:20486364..20488334+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00028569g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.76|0.88|0.83|0.76|25|236|992; (*GB) gi|297736949|emb|CBI26150.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42910|PPDK_MESCR (e_value=0.0) Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1;; (*TAIR) AT4G15530.6 (e_value=0.0) | Symbols: PPDK | pyruvate orthophosphate dikinase | chr4:8864828-8870748 REVERSE LENGTH=963;; (*ITAG) Solyc01g080460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72206073-72214485 transcript_region:SL2.40ch01:72206073..72214485+ go_terms:GO:0050242,GO:0016310,GO:0005524,GO:0003824 functional_description:"Pyruvate phosphate dikinase (AHRD V1 ***- Q84N32_SORBI); contains Interpro domain(s) IPR010121 Pyruvate, phosphate dikinase "; GO:0050242,GO:0016310,GO:0005524,GO:0003824 NbS00028569g0013.1 protein AED:0.43 eAED:0.50 QI:0|0.2|0|0.66|0.4|0.5|6|0|257; (*GB) gi|113205171|gb|AAT40519.2| (e_value=2e-16) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc10g012440.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:5209998-5210303 transcript_region:SL2.40ch10:5209998..5210303- functional_description:"Unknown Protein (AHRD V1)"; NbS00028569g0014.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|3|0|114; (*ITAG) Solyc07g064380.2.1 (e_value=5e-19) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00025500g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0|0.8|0.5|0.6|5|0|490; (*GB) gi|356501721|ref|XP_003519672.1| (e_value=1e-168) PREDICTED: uncharacterized protein LOC100799330 [Glycine max];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=1e-53) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=6e-132) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc12g006180.1.1 (e_value=7e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:723407-728206 transcript_region:SL2.40ch12:723407..728206+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00025500g0009.1 protein AED:0.19 eAED:0.19 QI:170|0.33|0.5|1|1|1|4|0|190; (*GB) gi|350535573|ref|NP_001234713.1| (e_value=7e-102) TK1-like deoxyribonucleoside kinase [Solanum lycopersicum];; (*SWP) sp|O81263|KITH_ORYSJ (e_value=5e-85) Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2;; (*TAIR) AT5G23070.1 (e_value=8e-87) | Symbols: | Thymidine kinase | chr5:7741979-7742827 FORWARD LENGTH=282;; (*ITAG) Solyc11g065760.1.1 (e_value=1e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48443570-48446534 transcript_region:SL2.40ch11:48443570..48446534- go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- Q71F77_SOLLC); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00003508g0016.1 protein AED:0.20 eAED:0.20 QI:215|0.90|0.93|1|0.90|0.93|32|0|1680; (*GB) gi|296089990|emb|CBI39809.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q14997|PSME4_HUMAN (e_value=4e-23) Proteasome activator complex subunit 4 OS=Homo sapiens GN=PSME4 PE=1 SV=2;; (*TAIR) AT3G13330.1 (e_value=0.0) | Symbols: PA200 | proteasome activating protein 200 | chr3:4319804-4330061 REVERSE LENGTH=1816;; (*ITAG) Solyc07g066030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64790060-64810056 transcript_region:SL2.40ch07:64790060..64810056- go_terms:GO:0005488 functional_description:"Proteasome activator subunit 4-like (AHRD V1 **-- Q5Z876_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00003508g0015.1 protein AED:0.10 eAED:0.10 QI:192|0.83|0.85|1|0.83|0.85|7|117|436; (*GB) gi|296089993|emb|CBI39812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF99|AAP7_ARATH (e_value=8e-174) Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1;; (*TAIR) AT5G23810.1 (e_value=6e-175) | Symbols: AAP7 | amino acid permease 7 | chr5:8028461-8030730 FORWARD LENGTH=467;; (*ITAG) Solyc07g066010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64776745-64779607 transcript_region:SL2.40ch07:64776745..64779607+ go_terms:GO:0015171 functional_description:"Amino acid permease (AHRD V1 **** B9N5L8_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00003508g0014.1 protein AED:0.11 eAED:0.11 QI:195|1|1|1|0.66|0.57|7|56|475; (*GB) gi|225462048|ref|XP_002268936.1| (e_value=0.0) PREDICTED: probable amino acid permease 7 [Vitis vinifera];; (*SWP) sp|Q9FF99|AAP7_ARATH (e_value=2e-170) Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1;; (*TAIR) AT5G23810.1 (e_value=2e-171) | Symbols: AAP7 | amino acid permease 7 | chr5:8028461-8030730 FORWARD LENGTH=467;; (*ITAG) Solyc07g066020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64780649-64784955 transcript_region:SL2.40ch07:64780649..64784955+ go_terms:GO:0015171 functional_description:"Amino acid permease (AHRD V1 **** B9N5L8_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00004894g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225461013|ref|XP_002280849.1| (e_value=2e-48) PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera];; (*TAIR) AT1G50740.1 (e_value=2e-41) | Symbols: | Transmembrane proteins 14C | chr1:18807861-18808765 FORWARD LENGTH=119;; (*ITAG) Solyc10g006310.2.1 (e_value=9e-57) genomic_reference:SL2.40ch10 gene_region:955678-959714 transcript_region:SL2.40ch10:955678..959714+ go_terms:GO:0016020 functional_description:"UPF0136 membrane protein At2g26240 (AHRD V1 ***- U136_ARATH); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00004894g0018.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|487; (*GB) gi|356509966|ref|XP_003523713.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 5-like [Glycine max];; (*SWP) sp|Q9M088|E135_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT4G31140.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:15141581-15143188 FORWARD LENGTH=484;; (*ITAG) Solyc08g074390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55669339-55671622 transcript_region:SL2.40ch08:55669339..55671622- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00004894g0001.1 protein AED:0.05 eAED:0.05 QI:461|0.81|0.58|1|0.93|0.88|17|0|1907; (*GB) gi|359476018|ref|XP_002280997.2| (e_value=0.0) PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9M086|DCAF1_ARATH (e_value=0.0) DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana GN=DCAF1 PE=1 SV=2;; (*TAIR) AT4G31160.1 (e_value=0.0) | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883;; (*ITAG) Solyc08g074370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55653575-55662343 transcript_region:SL2.40ch08:55653575..55662343- go_terms:GO:0005515,GO:0000166 functional_description:"DDB1- and CUL4-associated factor homolog 1 (AHRD V1 **-- DCAF1_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00004894g0017.1 protein AED:0.35 eAED:0.41 QI:0|0.33|0.25|1|1|1|4|457|171; (*GB) gi|224118912|ref|XP_002317936.1| (e_value=3e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49040.2 (e_value=1e-15) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18142007-18148826 REVERSE LENGTH=909;; (*ITAG) Solyc03g119650.2.1 (e_value=9e-18) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00025970g0012.1 protein AED:0.16 eAED:0.19 QI:0|0.28|0.25|1|0.14|0.25|8|0|613; (*GB) gi|297745248|emb|CBI40328.3| (e_value=1e-150) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G45830.1 (e_value=3e-90) | Symbols: DTA2 | downstream target of AGL15 2 | chr2:18866324-18868344 FORWARD LENGTH=523;; (*ITAG) Solyc01g094380.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:77653952-77658616 transcript_region:SL2.40ch01:77653952..77658616+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00025970g0011.1 protein AED:0.23 eAED:0.32 QI:0|0.5|0.28|0.85|0.5|0.42|7|0|243; (*GB) gi|224128029|ref|XP_002320223.1| (e_value=9e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5M757|ZDH15_ARATH (e_value=1e-55) Probable S-acyltransferase At4g00840 OS=Arabidopsis thaliana GN=At4g00840 PE=2 SV=1;; (*TAIR) AT4G00840.1 (e_value=1e-56) | Symbols: | DHHC-type zinc finger family protein | chr4:355483-357105 REVERSE LENGTH=291;; (*ITAG) Solyc10g018160.1.1 (e_value=2e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:6724903-6733852 transcript_region:SL2.40ch10:6724903..6733852+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- A8N304_COPC7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00032789g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|57791555|gb|AAW56553.1| (e_value=2e-36) ubiquitin/s27a 40s ribosomal protein [Nicotiana benthamiana];; (*SWP) sp|P62981|RS27A_SOLTU (e_value=2e-34) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=4e-32) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc12g098940.1.1 (e_value=3e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64627947-64628417 transcript_region:SL2.40ch12:64627947..64628417- go_terms:GO:0005840 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005840 NbS00049127g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|388496870|gb|AFK36501.1| (e_value=9e-44) unknown [Lotus japonicus];; (*SWP) sp|P42798|R15A1_ARATH (e_value=3e-45) 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2;; (*TAIR) AT5G59850.1 (e_value=2e-46) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc04g058060.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54322327-54325742 transcript_region:SL2.40ch04:54322327..54325742+ go_terms:GO:0005515 functional_description:"30S ribosomal protein S8P (AHRD V1 *-*- RS8_KORCO); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00034694g0001.1 protein AED:0.39 eAED:0.45 QI:0|0.66|0.5|1|1|1|4|0|217; (*GB) gi|297744735|emb|CBI37997.3| (e_value=2e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G51100.1 (e_value=3e-46) | Symbols: | unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18980531-18982174 REVERSE LENGTH=211;; (*ITAG) Solyc02g084550.2.1 (e_value=5e-80) genomic_reference:SL2.40ch02 gene_region:42213475-42218473 transcript_region:SL2.40ch02:42213475..42218473+ go_terms:GO:0005874 functional_description:"Chromosome 10 contig 1 DNA sequence (AHRD V1 ***- Q00ZV5_OSTTA)"; GO:0005874 NbS00007961g0016.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0.2|1|0.75|0.8|5|0|551; (*GB) gi|225438898|ref|XP_002283886.1| (e_value=0.0) PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Vitis vinifera];; (*SWP) sp|O82333|GH31_ARATH (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1;; (*TAIR) AT2G14960.1 (e_value=0.0) | Symbols: GH3.1 | Auxin-responsive GH3 family protein | chr2:6451659-6453670 REVERSE LENGTH=590;; (*ITAG) Solyc02g092820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48369709-48372206 transcript_region:SL2.40ch02:48369709..48372206- go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00007961g0017.1 protein AED:0.13 eAED:0.13 QI:499|1|1|1|0|0|4|0|173; (*GB) gi|224136848|ref|XP_002326960.1| (e_value=4e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24204.2 (e_value=4e-18) | Symbols: | RING/U-box superfamily protein | chr4:12562069-12562646 REVERSE LENGTH=157;; (*ITAG) Solyc02g092810.2.1 (e_value=2e-65) genomic_reference:SL2.40ch02 gene_region:48351756-48352986 transcript_region:SL2.40ch02:48351756..48352986- go_terms:GO:0008270 functional_description:"RNA-binding protein MEX3C (AHRD V1 *-*- MEX3C_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00007961g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.4|1|1|1|5|0|578; (*GB) gi|350537125|ref|NP_001233770.1| (e_value=0.0) metal transporter [Solanum lycopersicum];; (*SWP) sp|Q9SNV9|NRAM3_ARATH (e_value=0.0) Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2;; (*TAIR) AT2G23150.1 (e_value=0.0) | Symbols: NRAMP3, ATNRAMP3 | natural resistance-associated macrophage protein 3 | chr2:9856422-9858565 REVERSE LENGTH=509;; (*ITAG) Solyc02g092800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48343155-48346971 transcript_region:SL2.40ch02:48343155..48346971- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00007961g0015.1 protein AED:0.13 eAED:0.13 QI:78|1|1|1|0|0.5|2|323|228; (*GB) gi|10945615|gb|AAG24616.1|AF298594_1 (e_value=8e-16) arabinogalactan protein [Nicotiana alata];; (*ITAG) Solyc02g092790.2.1 (e_value=6e-17) genomic_reference:SL2.40ch02 gene_region:48339964-48342204 transcript_region:SL2.40ch02:48339964..48342204+ functional_description:"Arabinogalactan (AHRD V1 *-*- Q43719_SOLLC)"; NbS00007961g0019.1 protein AED:0.03 eAED:0.15 QI:3|0|0|1|0|0|2|0|202; (*GB) gi|296088938|emb|CBI38503.3| (e_value=3e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG65|C81D1_ARATH (e_value=3e-49) Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1;; (*TAIR) AT4G37360.1 (e_value=2e-57) | Symbols: CYP81D2 | cytochrome P450, family 81, subfamily D, polypeptide 2 | chr4:17567124-17568858 REVERSE LENGTH=499;; (*ITAG) Solyc02g092860.2.1 (e_value=8e-83) genomic_reference:SL2.40ch02 gene_region:48403960-48405736 transcript_region:SL2.40ch02:48403960..48405736+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001741g0012.1 protein AED:0.14 eAED:0.15 QI:76|0.93|0.82|1|0.75|0.76|17|0|880; (*GB) gi|356497706|ref|XP_003517700.1| (e_value=0.0) PREDICTED: GPI ethanolamine phosphate transferase 2-like [Glycine max];; (*SWP) sp|Q5H8A4|PIGG_HUMAN (e_value=1e-76) GPI ethanolamine phosphate transferase 2 OS=Homo sapiens GN=PIGG PE=1 SV=1;; (*TAIR) AT2G22530.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr2:9572971-9577441 REVERSE LENGTH=958;; (*ITAG) Solyc11g010550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3598062-3606823 transcript_region:SL2.40ch11:3598062..3606823- go_terms:GO:0008152 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-*- C1GLC2_PARBD); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0008152 NbS00001741g0011.1 protein AED:0.21 eAED:0.21 QI:165|0.83|0.84|1|0.83|0.84|13|470|763; (*GB) gi|255579694|ref|XP_002530686.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LX99|GRIMP_ARATH (e_value=0.0) Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1;; (*TAIR) AT5G65460.1 (e_value=0.0) | Symbols: KCA2, KAC2 | kinesin like protein for actin based chloroplast movement 2 | chr5:26161831-26169001 REVERSE LENGTH=1264;; (*ITAG) Solyc11g010560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00001741g0004.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|1|1|3|0|190; (*ITAG) Solyc11g010540.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3589421-3590545 transcript_region:SL2.40ch11:3589421..3590545- go_terms:GO:0031072 functional_description:"DnaJ domain containing protein expressed (AHRD V1 *-*- Q84R00_ORYSJ); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00025657g0016.1 protein AED:0.06 eAED:0.06 QI:299|1|0.91|1|0.72|0.75|12|624|1644; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=5e-16) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1;; (*TAIR) AT2G25320.1 (e_value=0.0) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00025657g0014.1 protein AED:0.06 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.75|4|0|488; (*GB) gi|255548866|ref|XP_002515489.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q3E7Q9|GLYT6_ARATH (e_value=3e-147) Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2;; (*TAIR) AT5G25310.1 (e_value=2e-148) | Symbols: | Exostosin family protein | chr5:8784820-8787235 FORWARD LENGTH=480;; (*ITAG) Solyc08g042010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28659345-28663693 transcript_region:SL2.40ch08:28659345..28663693+ go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M3X2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00025657g0015.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|335; (*GB) gi|296082060|emb|CBI21065.3| (e_value=5e-160) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFP3|GLYT4_ARATH (e_value=1e-155) Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana GN=At5g11120/At5g11130 PE=3 SV=2;; (*TAIR) AT5G11130.1 (e_value=8e-157) | Symbols: | Exostosin family protein | chr5:3542320-3544724 FORWARD LENGTH=480;; (*ITAG) Solyc12g019050.1.1 (e_value=1e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9004310-9005978 transcript_region:SL2.40ch12:9004310..9005978+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M8_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00051158g0004.1 protein AED:0.22 eAED:0.23 QI:0|1|0.6|1|1|0.8|5|0|413; (*GB) gi|350539775|ref|NP_001234526.1| (e_value=8e-145) JA-induced WRKY protein [Solanum lycopersicum];; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=1e-85) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1;; (*TAIR) AT1G80840.1 (e_value=1e-86) | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302;; (*ITAG) Solyc03g116890.2.1 (e_value=7e-157) genomic_reference:SL2.40ch03 gene_region:60192911-60195340 transcript_region:SL2.40ch03:60192911..60195340- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C0L2R9_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00051412g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|4|0|885; (*GB) gi|225428169|ref|XP_002278825.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264167 [Vitis vinifera];; (*TAIR) AT4G35240.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:16761334-16764324 REVERSE LENGTH=865;; (*ITAG) Solyc01g112050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89925103-89931698 transcript_region:SL2.40ch01:89925103..89931698- functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00001874g0014.1 protein AED:0.32 eAED:0.32 QI:0|0.55|0.3|1|1|1|10|329|276; (*GB) gi|356550307|ref|XP_003543529.1| (e_value=4e-97) PREDICTED: uncharacterized protein LOC100795899 [Glycine max];; (*TAIR) AT5G59210.2 (e_value=1e-99) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=433;; (*ITAG) Solyc09g055760.2.1 (e_value=6e-125) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00001874g0016.1 protein AED:0.47 eAED:0.47 QI:116|0.66|0.5|1|0.66|0.75|4|0|81; (*GB) gi|297793451|ref|XP_002864610.1| (e_value=8e-26) hypothetical protein ARALYDRAFT_919132 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G59210.1 (e_value=1e-27) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=434;; (*ITAG) Solyc09g055760.2.1 (e_value=8e-31) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00001874g0007.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|76 NbS00001874g0019.1 protein AED:0.23 eAED:0.26 QI:0|0.63|0.41|1|0.36|0.41|12|749|847; (*GB) gi|75164750|sp|Q948X8.1|MTNA_TOBAC (e_value=0.0) RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein;; (*SWP) sp|Q948X8|MTNA_TOBAC (e_value=0.0) Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1;; (*TAIR) AT2G05830.1 (e_value=3e-133) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr2:2229759-2231839 FORWARD LENGTH=374;; (*ITAG) Solyc08g022210.2.1 (e_value=5e-165) genomic_reference:SL2.40ch08 gene_region:14105526-14113435 transcript_region:SL2.40ch08:14105526..14113435- go_terms:GO:0003743 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- B6TZD1_MAIZE); contains Interpro domain(s) IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase "; GO:0003743 NbS00001874g0018.1 protein AED:0.27 eAED:0.38 QI:8|1|0.5|1|0|0|2|0|169; (*GB) gi|225427625|ref|XP_002269629.1| (e_value=8e-39) PREDICTED: long-chain-alcohol oxidase FAO4A-like [Vitis vinifera];; (*SWP) sp|O65709|FAO4A_ARATH (e_value=3e-33) Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=2 SV=2;; (*TAIR) AT4G19380.1 (e_value=2e-34) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:10568427-10572288 REVERSE LENGTH=726;; (*ITAG) Solyc08g075240.2.1 (e_value=1e-61) genomic_reference:SL2.40ch08 gene_region:56537027-56542613 transcript_region:SL2.40ch08:56537027..56542613+ go_terms:GO:0009055,GO:0046577 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00011392g0005.1 protein AED:0.05 eAED:0.05 QI:43|1|1|1|0.9|0.90|11|124|909; (*GB) gi|225466033|ref|XP_002267656.1| (e_value=0.0) PREDICTED: condensin complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q9BPX3|CND3_HUMAN (e_value=5e-24) Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1;; (*TAIR) AT5G37630.1 (e_value=0.0) | Symbols: EMB2656 | ARM repeat superfamily protein | chr5:14947407-14952546 FORWARD LENGTH=1051;; (*ITAG) Solyc11g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4411251-4419803 transcript_region:SL2.40ch11:4411251..4419803- go_terms:GO:0005488 functional_description:"Condensin complex subunit 3 (AHRD V1 *-*- C0H9G7_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00001920g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|367; (*GB) gi|359482340|ref|XP_003632758.1| (e_value=2e-118) PREDICTED: uncharacterized protein LOC100241240 [Vitis vinifera];; (*TAIR) AT3G14180.1 (e_value=2e-62) | Symbols: | sequence-specific DNA binding transcription factors | chr3:4707290-4708621 REVERSE LENGTH=443;; (*ITAG) Solyc03g122030.1.1 (e_value=2e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64077325-64078416 transcript_region:SL2.40ch03:64077325..64078416+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7L2D2_ARALY)"; GO:0003700 NbS00001920g0021.1 protein AED:0.11 eAED:0.13 QI:0|0.57|0.37|1|0.42|0.25|8|0|1395; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=5e-87) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46599025-46605833 transcript_region:SL2.40ch12:46599025..46605833- functional_description:"Erect panical 2 (AHRD V1 *--- B8B8K3_ORYSI)"; NbS00001920g0010.1 protein AED:0.30 eAED:0.31 QI:2399|0.81|0.76|1|0.68|0.58|17|277|294; (*GB) gi|147789144|emb|CAN60339.1| (e_value=1e-125) hypothetical protein VITISV_031318 [Vitis vinifera];; (*SWP) sp|Q9LJH5|GLO4_ARATH (e_value=2e-119) Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1;; (*TAIR) AT3G14130.1 (e_value=1e-120) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4685844-4687852 REVERSE LENGTH=363;; (*ITAG) Solyc03g122140.2.1 (e_value=2e-152) genomic_reference:SL2.40ch03 gene_region:64135516-64138456 transcript_region:SL2.40ch03:64135516..64138456- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- B2WEY8_PYRTR); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00001920g0016.1 protein AED:0.31 eAED:0.32 QI:0|0.83|0.85|1|0.83|0.71|7|523|187; (*GB) gi|77403675|dbj|BAE46416.1| (e_value=7e-87) TATA binding protein associated factor [Solanum tuberosum];; (*SWP) sp|Q8VE65|TAF12_MOUSE (e_value=3e-30) Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 SV=1;; (*TAIR) AT1G17440.2 (e_value=6e-52) | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683;; (*ITAG) Solyc03g122020.2.1 (e_value=6e-88) genomic_reference:SL2.40ch03 gene_region:64066411-64074975 transcript_region:SL2.40ch03:64066411..64074975+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- B5X4I7_SALSA); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00001920g0005.1 protein AED:0.41 eAED:0.46 QI:688|0.8|0.83|1|0.4|0.5|6|534|144; (*GB) gi|329025150|gb|AEB71558.1| (e_value=1e-100) synaptobrevin/VAMP-like protein [Solanum chacoense];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=2e-98) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=2e-99) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc03g122090.2.1 (e_value=2e-103) genomic_reference:SL2.40ch03 gene_region:64108342-64111692 transcript_region:SL2.40ch03:64108342..64111692+ go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR001388 Synaptobrevin IPR010908 Longin "; GO:0005484 NbS00056091g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0|2|633|125; (*TAIR) AT2G31305.1 (e_value=5e-12) | Symbols: INH3 | inhibitor-3 | chr2:13350909-13351232 FORWARD LENGTH=107; NbS00001810g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|76 NbS00001810g0005.1 protein AED:0.25 eAED:0.28 QI:0|0|0|0.8|1|1|5|0|370; (*GB) gi|224098810|ref|XP_002311275.1| (e_value=4e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIV6|DGP10_ARATH (e_value=1e-106) Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1;; (*TAIR) AT5G36950.1 (e_value=9e-108) | Symbols: DegP10 | DegP protease 10 | chr5:14594992-14598216 FORWARD LENGTH=586;; (*ITAG) Solyc11g008850.1.1 (e_value=6e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3033380-3040040 transcript_region:SL2.40ch11:3033380..3040040+ go_terms:GO:0008236 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0008236 NbS00001810g0011.1 protein AED:0.27 eAED:0.30 QI:323|0.4|0.5|1|0.6|0.66|6|0|326; (*GB) gi|255545588|ref|XP_002513854.1| (e_value=5e-139) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=8e-73) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT1G36320.1 (e_value=4e-134) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:13671876-13673939 FORWARD LENGTH=414;; (*ITAG) Solyc04g072400.2.1 (e_value=5e-176) genomic_reference:SL2.40ch04 gene_region:57015439-57020648 transcript_region:SL2.40ch04:57015439..57020648+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00000748g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.91|0.84|1|0.75|0.76|13|0|842; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=0.0) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=0.0) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=0.0) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc05g051220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60621366-60632925 transcript_region:SL2.40ch05:60621366..60632925- go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00000748g0009.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0.5|0.33|3|0|374; (*GB) gi|255585566|ref|XP_002533472.1| (e_value=2e-164) ATRAD3, putative [Ricinus communis];; (*TAIR) AT3G05390.1 (e_value=1e-68) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc05g051210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60619140-60620753 transcript_region:SL2.40ch05:60619140..60620753+ go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 **-- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00001745g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|356542686|ref|XP_003539797.1| (e_value=1e-38) PREDICTED: histone H2B-alpha-like [Glycine max];; (*SWP) sp|Q9SGE3|H2B2_ARATH (e_value=2e-36) Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1;; (*TAIR) AT1G08170.1 (e_value=1e-37) | Symbols: | Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=243;; (*ITAG) Solyc06g074750.1.1 (e_value=3e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42689670-42690521 transcript_region:SL2.40ch06:42689670..42690521+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 *-*- B6SGC3_MAIZE); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbS00012717g0010.1 protein AED:0.48 eAED:0.48 QI:69|0|0|0.5|0|0.25|4|0|105 NbS00012717g0008.1 protein AED:0.29 eAED:0.34 QI:251|0.8|0.83|1|0.6|0.66|6|0|315; (*GB) gi|148595744|emb|CAM32013.1| (e_value=6e-37) YA3 [Petunia x hybrida];; (*TAIR) AT5G12840.4 (e_value=4e-12) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=271;; (*ITAG) Solyc01g087240.2.1 (e_value=2e-140) genomic_reference:SL2.40ch01 gene_region:73938193-73944527 transcript_region:SL2.40ch01:73938193..73944527+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-** B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700 NbS00036068g0011.1 protein AED:0.31 eAED:0.31 QI:168|0.75|0.6|1|0.75|0.6|5|0|477; (*GB) gi|255570061|ref|XP_002525993.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|E2RBS6|SETD3_CANFA (e_value=5e-20) Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1;; (*TAIR) AT1G24610.1 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr1:8720906-8722711 REVERSE LENGTH=476;; (*ITAG) Solyc01g005380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:261004-265599 transcript_region:SL2.40ch01:261004..265599+ functional_description:"SET domain containing protein (AHRD V1 ***- B6U0H4_MAIZE); contains Interpro domain(s) IPR001214 SET "; NbS00036068g0012.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|0|0.5|2|0|135; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00036068g0013.1 protein AED:0.93 eAED:0.95 QI:0|0|0|0.33|0.5|0.33|3|0|83 NbS00036068g0004.1 protein AED:0.41 eAED:0.41 QI:2|-1|0|1|-1|0|1|0|63 NbS00018333g0015.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0|2|0|325; (*GB) gi|357443815|ref|XP_003592185.1| (e_value=1e-151) Ornithine cyclodeaminase [Medicago truncatula];; (*SWP) sp|Q9HDZ0|YK01_SCHPO (e_value=9e-46) Uncharacterized protein P11E10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP11E10.01 PE=2 SV=1;; (*TAIR) AT5G52810.1 (e_value=5e-137) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:21399524-21400501 FORWARD LENGTH=325;; (*ITAG) Solyc06g036330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22591706-22592686 transcript_region:SL2.40ch06:22591706..22592686+ go_terms:GO:0070324 functional_description:"Ornithine cyclodeaminase protein (AHRD V1 ***- A3I2L0_9BACT); contains Interpro domain(s) IPR003462 Ornithine cyclodeaminase/mu-crystallin "; GO:0070324 NbS00018333g0016.1 protein AED:0.14 eAED:0.14 QI:169|0.87|0.77|1|0.75|0.66|9|354|295; (*GB) gi|119331598|gb|ABL63125.1| (e_value=1e-114) MYB transcription factor [Catharanthus roseus];; (*SWP) sp|Q6R0H0|ASG4_ARATH (e_value=3e-71) Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1;; (*TAIR) AT5G52660.2 (e_value=1e-91) | Symbols: | Homeodomain-like superfamily protein | chr5:21359423-21362037 REVERSE LENGTH=331;; (*ITAG) Solyc06g036300.2.1 (e_value=1e-150) genomic_reference:SL2.40ch06 gene_region:22496774-22504988 transcript_region:SL2.40ch06:22496774..22504988- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR87_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00018333g0014.1 protein AED:0.28 eAED:0.28 QI:213|0.87|1|1|1|1|9|217|439; (*GB) gi|359490595|ref|XP_002274287.2| (e_value=6e-145) PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=2e-91) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT3G49140.1 (e_value=1e-92) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18212187-18215557 REVERSE LENGTH=499;; (*ITAG) Solyc06g036340.2.1 (e_value=8e-170) genomic_reference:SL2.40ch06 gene_region:22593116-22598519 transcript_region:SL2.40ch06:22593116..22598519- functional_description:"Unknown Protein (AHRD V1)"; NbS00008412g0006.1 protein AED:0.43 eAED:0.49 QI:306|0.6|0.5|1|0.4|0.33|6|0|159; (*ITAG) Solyc05g052480.2.1 (e_value=5e-14) genomic_reference:SL2.40ch05 gene_region:61836481-61844845 transcript_region:SL2.40ch05:61836481..61844845+ go_terms:GO:0003993 functional_description:"Multiple inositol polyphosphate phosphatase (AHRD V1 ***- Q54ND5_DICDI); contains Interpro domain(s) IPR016274 Histidine acid phosphatase, eukaryotic "; GO:0003993 NbS00008412g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.55|1|0.75|0.55|9|0|802; (*GB) gi|194396261|gb|ACF60500.1| (e_value=0.0) plastid transketolase [Nicotiana tabacum];; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=0.0) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G60750.1 (e_value=0.0) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741;; (*ITAG) Solyc10g018300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7264174-7267205 transcript_region:SL2.40ch10:7264174..7267205- go_terms:GO:0004802,GO:0005515 functional_description:"Transketolase 1 (AHRD V1 **** O78327_CAPAN); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0005515 NbS00007934g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|157; (*GB) gi|233955417|gb|ACQ91204.1| (e_value=8e-92) truncated hemoglobin [Carica papaya];; (*TAIR) AT4G32690.1 (e_value=5e-87) | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:15765486-15766862 FORWARD LENGTH=175;; (*ITAG) Solyc08g068070.2.1 (e_value=5e-104) genomic_reference:SL2.40ch08 gene_region:54369971-54375358 transcript_region:SL2.40ch08:54369971..54375358+ go_terms:GO:0005344 functional_description:"Globin (AHRD V1 ***- C8WRW6_ALIAD); contains Interpro domain(s) IPR001486 Globin, truncated bacterial-like "; GO:0005344 NbS00025476g0002.1 protein AED:0.22 eAED:0.22 QI:198|0.71|0.75|1|1|1|8|756|210; (*GB) gi|225431301|ref|XP_002276296.1| (e_value=2e-66) PREDICTED: thioredoxin domain-containing protein 9 [Vitis vinifera];; (*TAIR) AT5G66410.1 (e_value=4e-60) | Symbols: PLP3b | phosducin-like protein 3 homolog | chr5:26519909-26521459 FORWARD LENGTH=230;; (*ITAG) Solyc02g062540.2.1 (e_value=4e-77) genomic_reference:SL2.40ch02 gene_region:28824062-28828907 transcript_region:SL2.40ch02:28824062..28828907- go_terms:GO:0048487 functional_description:"Thioredoxin domain containing 9 (AHRD V1 *--- Q5M8C7_RAT); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00050046g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|197; (*GB) gi|4589884|dbj|BAA76905.1| (e_value=7e-119) homeobox 22 [Nicotiana tabacum];; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=6e-57) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.1 (e_value=5e-58) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc05g005090.2.1 (e_value=1e-79) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00050046g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|0.66|0.5|0.66|3|0|184; (*GB) gi|4589884|dbj|BAA76905.1| (e_value=2e-69) homeobox 22 [Nicotiana tabacum];; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=4e-47) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.2 (e_value=3e-48) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=329;; (*ITAG) Solyc05g005090.2.1 (e_value=8e-56) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00053780g0001.1 protein AED:0.30 eAED:0.30 QI:70|1|1|1|0.5|0.33|3|228|295; (*GB) gi|359485884|ref|XP_002270768.2| (e_value=3e-170) PREDICTED: probable serine/threonine-protein kinase WNK11-like [Vitis vinifera];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=1e-160) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=9e-162) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc05g041420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:50821713-50825381 transcript_region:SL2.40ch05:50821713..50825381+ go_terms:GO:0019903 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019903 NbS00046959g0004.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|68; (*GB) gi|208429106|gb|ACI26722.1| (e_value=1e-25) receptor-like kinase [Nicotiana glutinosa];; (*ITAG) Solyc07g055400.1.1 (e_value=8e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60765112-60765985 transcript_region:SL2.40ch07:60765112..60765985- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00046959g0006.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|0|0|4|0|453; (*GB) gi|208429106|gb|ACI26722.1| (e_value=2e-136) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=2e-58) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=1e-59) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055640.1.1 (e_value=3e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60920505-60927117 transcript_region:SL2.40ch07:60920505..60927117+ go_terms:GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 *-*- B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00035675g0001.1 protein AED:0.16 eAED:0.35 QI:80|1|0|1|0|0|2|0|88; (*GB) gi|225437856|ref|XP_002264085.1| (e_value=2e-29) PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera];; (*SWP) sp|P24397|HY6H_HYONI (e_value=8e-22) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT4G10500.1 (e_value=4e-19) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6491089-6492342 FORWARD LENGTH=349;; (*ITAG) Solyc09g066320.1.1 (e_value=9e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60349151-60351336 transcript_region:SL2.40ch09:60349151..60351336- go_terms:GO:0045544,GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 2 (AHRD V1 **-* ACCO2_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045431 NbS00010354g0017.1 protein AED:0.14 eAED:0.14 QI:17|1|0.83|1|0.8|1|6|0|668; (*GB) gi|225442172|ref|XP_002275795.1| (e_value=0.0) PREDICTED: phospholipid:diacylglycerol acyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=0.0) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=0.0) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc03g121960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64008721-64015716 transcript_region:SL2.40ch03:64008721..64015716- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** C5ME98_CANTT); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00010354g0010.1 protein AED:0.30 eAED:0.31 QI:238|0.66|0.5|1|0.77|0.7|10|0|506; (*GB) gi|147805280|emb|CAN77858.1| (e_value=1e-55) hypothetical protein VITISV_005454 [Vitis vinifera];; (*TAIR) AT1G17460.1 (e_value=3e-34) | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546 FORWARD LENGTH=604;; (*ITAG) Solyc03g121990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64051401-64057986 transcript_region:SL2.40ch03:64051401..64057986- go_terms:GO:0003700 functional_description:"MYB transcription factor-like (AHRD V1 **-* Q6YZ61_ORYSJ); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003700 NbS00010354g0016.1 protein AED:0.30 eAED:0.32 QI:25|1|0.75|1|1|0.87|8|0|319; (*GB) gi|224070823|ref|XP_002303251.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAI1|DRG2_ARATH (e_value=0.0) Developmentally regulated G-protein 2 OS=Arabidopsis thaliana GN=DRG2 PE=2 SV=1;; (*TAIR) AT1G72660.3 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27354161-27356543 FORWARD LENGTH=399;; (*ITAG) Solyc03g121980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64042135-64049964 transcript_region:SL2.40ch03:64042135..64049964- go_terms:GO:0008134,GO:0005525 functional_description:"Developmentally-regulated GTP-binding protein 2 (AHRD V1 **-* B6TJC5_MAIZE); contains Interpro domain(s) IPR004095 TGS "; GO:0008134,GO:0005525 NbS00010354g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|359482494|ref|XP_002276086.2| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100246362 [Vitis vinifera];; (*TAIR) AT3G13980.1 (e_value=5e-47) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). | chr3:4619189-4620262 REVERSE LENGTH=357;; (*ITAG) Solyc03g121970.1.1 (e_value=2e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64025487-64026713 transcript_region:SL2.40ch03:64025487..64026713+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00013105g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0|0.33|3|0|282; (*GB) gi|24745923|dbj|BAC23044.1| (e_value=2e-74) cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=9e-27) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36130.1 (e_value=5e-25) | Symbols: | Cytochrome P450 superfamily protein | chr5:14209293-14209811 REVERSE LENGTH=140;; (*ITAG) Solyc11g056670.1.1 (e_value=2e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45056892-45058933 transcript_region:SL2.40ch11:45056892..45058933- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00013105g0001.1 protein AED:0.25 eAED:0.42 QI:0|0|0|1|1|1|4|0|158; (*GB) gi|224076725|ref|XP_002304987.1| (e_value=2e-22) equilibrative nucleoside transporter [Populus trichocarpa];; (*TAIR) AT4G05120.1 (e_value=2e-20) | Symbols: ENT3, FUR1, ATENT3 | Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418;; (*ITAG) Solyc10g005450.1.1 (e_value=8e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:329254-332201 transcript_region:SL2.40ch10:329254..332201+ go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H1Z9_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0005337 NbS00012613g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|93 NbS00061729g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|180; (*GB) gi|253796258|gb|ACT35733.1| (e_value=8e-85) SLF-interacting SKP1 [Petunia x hybrida];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=5e-35) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=4e-36) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=5e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00061729g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|104; (*ITAG) Solyc11g008410.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2604594-2604875 transcript_region:SL2.40ch11:2604594..2604875- functional_description:"Unknown Protein (AHRD V1)"; NbS00024860g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|75; (*GB) gi|255539469|ref|XP_002510799.1| (e_value=6e-19) r2r3-myb transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=1e-12) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G57560.1 (e_value=3e-14) | Symbols: AtMYB50, MYB50 | myb domain protein 50 | chr1:21316851-21317959 FORWARD LENGTH=314;; (*ITAG) Solyc03g025870.2.1 (e_value=7e-23) genomic_reference:SL2.40ch03 gene_region:7636896-7639652 transcript_region:SL2.40ch03:7636896..7639652- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00024860g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|597; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=0.0) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9M0M5|SCL13_ARATH (e_value=0.0) Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2;; (*TAIR) AT4G17230.1 (e_value=0.0) | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529;; (*ITAG) Solyc04g014830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:5064579-5066240 transcript_region:SL2.40ch04:5064579..5066240- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00024860g0019.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|303; (*GB) gi|356501636|ref|XP_003519630.1| (e_value=1e-111) PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Glycine max];; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=5e-104) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=4e-105) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc04g014880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5133669-5135324 transcript_region:SL2.40ch04:5133669..5135324+ go_terms:GO:0015271,GO:0015269 functional_description:"Outward rectifying potassium channel (AHRD V1 **** B9IH25_POPTR); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00024860g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0|0.75|1|1|4|0|162; (*GB) gi|224086564|ref|XP_002307909.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GYX3|MP705_ARATH (e_value=5e-48) Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1;; (*TAIR) AT4G17220.1 (e_value=4e-49) | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513;; (*ITAG) Solyc04g015010.2.1 (e_value=1e-61) genomic_reference:SL2.40ch04 gene_region:5219478-5223595 transcript_region:SL2.40ch04:5219478..5223595+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 5 (AHRD V1 **-* Q8GYX3_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00027939g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|0.5|0.33|3|665|825; (*GB) gi|224092528|ref|XP_002309647.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q68F64|UN45B_XENLA (e_value=2e-11) Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=0.0) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc07g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2125803-2128660 transcript_region:SL2.40ch07:2125803..2128660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00018221g0004.1 protein AED:0.12 eAED:0.12 QI:321|1|0.87|1|1|1|8|0|813; (*GB) gi|225434891|ref|XP_002283273.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VZI8|FTSHA_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1;; (*TAIR) AT1G07510.1 (e_value=0.0) | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-2309380 FORWARD LENGTH=813;; (*ITAG) Solyc10g086550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64658970-64670325 transcript_region:SL2.40ch10:64658970..64670325- go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog 3 (AHRD V1 *--- FTSH3_SYNY3); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00018221g0006.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|74 NbS00034665g0005.1 protein AED:0.00 eAED:0.00 QI:70|1|1|1|1|1|2|404|209; (*GB) gi|329739380|gb|ACY74744.2| (e_value=1e-122) methanol inducible protein [Nicotiana benthamiana];; (*ITAG) Solyc08g082120.2.1 (e_value=4e-31) genomic_reference:SL2.40ch08 gene_region:62171934-62173538 transcript_region:SL2.40ch08:62171934..62173538+ functional_description:"Methanol inducible protein (AHRD V1 ***- D1MAX5_NICBE)"; NbS00055518g0003.1 protein AED:0.17 eAED:0.17 QI:182|1|1|1|0.66|0.87|16|347|721; (*GB) gi|359494846|ref|XP_002267170.2| (e_value=0.0) PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8-like [Vitis vinifera];; (*SWP) sp|Q6R2J8|SRF8_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1;; (*TAIR) AT4G22130.1 (e_value=0.0) | Symbols: SRF8 | STRUBBELIG-receptor family 8 | chr4:11723733-11727331 FORWARD LENGTH=703;; (*ITAG) Solyc02g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39719636-39726654 transcript_region:SL2.40ch02:39719636..39726654+ go_terms:GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0016301 NbS00028361g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|78191426|gb|ABB29934.1| (e_value=3e-29) acidic ribosomal protein P1a-like [Solanum tuberosum];; (*SWP) sp|Q8LEQ0|RLA13_ARATH (e_value=9e-22) 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2;; (*TAIR) AT5G47700.2 (e_value=7e-23) | Symbols: | 60S acidic ribosomal protein family | chr5:19328019-19328724 REVERSE LENGTH=113;; (*ITAG) Solyc01g104370.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:84525541-84526490 transcript_region:SL2.40ch01:84525541..84526490- go_terms:GO:0005515 functional_description:"60S acidic ribosomal protein P1 (AHRD V1 ***- B6T3C1_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005515 NbS00028361g0007.1 protein AED:0.27 eAED:0.27 QI:208|0.92|0.92|1|1|1|14|334|518; (*GB) gi|255556438|ref|XP_002519253.1| (e_value=0.0) galactokinase, putative [Ricinus communis];; (*SWP) sp|Q9SEE5|GALK1_ARATH (e_value=0.0) Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2;; (*TAIR) AT3G06580.1 (e_value=0.0) | Symbols: GAL1, GALK | Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496;; (*ITAG) Solyc01g058390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:59252697-59258614 transcript_region:SL2.40ch01:59252697..59258614- go_terms:GO:0004335 functional_description:"Galactokinase (AHRD V1 **** B6V3B9_CUCME); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0004335 NbS00024360g0007.1 protein AED:0.12 eAED:0.12 QI:205|1|0.8|1|0.75|0.8|5|286|123; (*GB) gi|224120300|ref|XP_002318295.1| (e_value=5e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31170.2 (e_value=1e-54) | Symbols: ATSRX, SRX | sulfiredoxin | chr1:11133521-11134228 FORWARD LENGTH=125;; (*ITAG) Solyc02g068710.2.1 (e_value=9e-72) genomic_reference:SL2.40ch02 gene_region:33214656-33217727 transcript_region:SL2.40ch02:33214656..33217727+ go_terms:GO:0032542 functional_description:"ParB domain protein nuclease (AHRD V1 **-- B8HYI6_CYAP4); contains Interpro domain(s) IPR016692 Sulfiredoxin "; GO:0032542 NbS00024360g0010.1 protein AED:0.15 eAED:0.15 QI:407|0.95|0.87|1|0.86|0.83|24|0|1477; (*GB) gi|225423670|ref|XP_002276461.1| (e_value=0.0) PREDICTED: protein NAP1-like [Vitis vinifera];; (*SWP) sp|Q5S2C4|NCKP1_ARATH (e_value=0.0) Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2;; (*TAIR) AT2G35110.2 (e_value=0.0) | Symbols: GRL, NAP1, NAPP | transcription activators | chr2:14795970-14803525 REVERSE LENGTH=1396;; (*ITAG) Solyc02g068720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33218147-33235322 transcript_region:SL2.40ch02:33218147..33235322- go_terms:GO:0005515,GO:0016563 functional_description:"Nck-associated protein 1 (AHRD V1 **-- B7ZGK5_LOTJA); contains Interpro domain(s) IPR019137 Nck-associated protein 1 "; GO:0005515,GO:0016563 NbS00017854g0003.1 protein AED:0.10 eAED:0.11 QI:148|1|0.8|1|0.75|0.6|5|0|515; (*GB) gi|224113165|ref|XP_002316412.1| (e_value=6e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52170.2 (e_value=8e-44) | Symbols: | DNA binding | chr3:19347039-19349099 REVERSE LENGTH=499;; (*ITAG) Solyc11g007850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2066455-2070716 transcript_region:SL2.40ch11:2066455..2070716+ functional_description:"Plastid DNA-binding protein (Fragment) (AHRD V1 ***- Q5DW96_PRUYE)"; NbS00005203g0009.1 protein AED:0.17 eAED:0.20 QI:0|1|0.75|1|1|1|4|254|364; (*GB) gi|225448273|ref|XP_002274470.1| (e_value=1e-165) PREDICTED: alternative oxidase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q40294|AOX1_MANIN (e_value=1e-160) Alternative oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2;; (*TAIR) AT5G64210.1 (e_value=5e-151) | Symbols: AOX2 | alternative oxidase 2 | chr5:25683965-25685664 REVERSE LENGTH=353;; (*ITAG) Solyc01g105220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85221878-85224382 transcript_region:SL2.40ch01:85221878..85224382- go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** B2CKL9_VITVI); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00005203g0016.1 protein AED:0.24 eAED:0.26 QI:275|0.66|0.71|1|0.83|0.85|7|361|365; (*GB) gi|225468498|ref|XP_002270407.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera];; (*SWP) sp|O24454|UBP3_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1;; (*TAIR) AT4G39910.1 (e_value=0.0) | Symbols: ATUBP3, UBP3 | ubiquitin-specific protease 3 | chr4:18511858-18514139 REVERSE LENGTH=371;; (*ITAG) Solyc01g105240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85237018-85241688 transcript_region:SL2.40ch01:85237018..85241688- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SZ50_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00005203g0014.1 protein AED:0.12 eAED:0.12 QI:145|0.92|0.92|1|0.76|0.78|14|184|1060; (*GB) gi|371486267|gb|AEX31181.1| (e_value=0.0) calmodulin-binding transcription factor SR1L [Solanum lycopersicum];; (*SWP) sp|Q6NPP4|CMTA2_ARATH (e_value=0.0) Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1;; (*TAIR) AT5G64220.2 (e_value=0.0) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr5:25686434-25691903 FORWARD LENGTH=1050;; (*ITAG) Solyc01g105230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85225555-85236376 transcript_region:SL2.40ch01:85225555..85236376+ go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 2 (AHRD V1 **** Q0WNN4_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00005203g0015.1 protein AED:0.54 eAED:0.54 QI:0|0.2|0|0.5|0.8|0.66|6|0|194; (*GB) gi|225430880|ref|XP_002269581.1| (e_value=9e-30) PREDICTED: protein DA1-related 1-like [Vitis vinifera];; (*SWP) sp|P0C7Q8|DA1_ARATH (e_value=3e-30) Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1;; (*TAIR) AT1G19270.1 (e_value=3e-31) | Symbols: DA1 | DA1 | chr1:6663327-6665845 FORWARD LENGTH=532;; (*ITAG) Solyc01g105180.2.1 (e_value=3e-82) genomic_reference:SL2.40ch01 gene_region:85211483-85216375 transcript_region:SL2.40ch01:85211483..85216375+ go_terms:GO:0043130 functional_description:"LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR)"; GO:0043130 NbS00021103g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.64|0.46|1|0.92|0.8|15|0|846; (*GB) gi|365189292|dbj|BAL42333.1| (e_value=0.0) Heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P35016|ENPL_CATRO (e_value=0.0) Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1;; (*TAIR) AT4G24190.2 (e_value=0.0) | Symbols: SHD, AtHsp90.7, AtHsp90-7 | Chaperone protein htpG family protein | chr4:12551902-12555851 REVERSE LENGTH=823;; (*ITAG) Solyc04g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63110553-63116088 transcript_region:SL2.40ch04:63110553..63116088- go_terms:GO:0042623,GO:0050750 functional_description:"Chaperone protein htpG (AHRD V1 **-- HTPG_MYCA1); contains Interpro domain(s) IPR015566 Molecular chaperone, heat shock protein, endoplasmin "; GO:0042623,GO:0050750 NbS00034545g0006.1 protein AED:0.23 eAED:0.24 QI:0|0.91|0.76|1|0.75|0.84|13|1100|514; (*GB) gi|225425222|ref|XP_002266814.1| (e_value=0.0) PREDICTED: CCA-adding enzyme [Vitis vinifera];; (*SWP) sp|P0ABF1|PCNB_ECOLI (e_value=5e-36) Poly(A) polymerase OS=Escherichia coli (strain K12) GN=pcnB PE=1 SV=2;; (*TAIR) AT5G23690.1 (e_value=0.0) | Symbols: | Polynucleotide adenylyltransferase family protein | chr5:7987664-7990466 FORWARD LENGTH=527;; (*ITAG) Solyc01g009670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3907694-3914001 transcript_region:SL2.40ch01:3907694..3914001- go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *-*- CCA_STAES); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00034545g0008.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|0|0.25|4|0|347; (*GB) gi|224134853|ref|XP_002321921.1| (e_value=1e-110) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9ZW95|C7352_ARATH (e_value=9e-39) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A2 PE=1 SV=1;; (*TAIR) AT5G52400.1 (e_value=2e-88) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=5e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00008607g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|1|1|2|476|459; (*GB) gi|343887299|dbj|BAK61845.1| (e_value=7e-141) ankyrin repeat family protein [Citrus unshiu];; (*SWP) sp|Q9ZU96|Y2168_ARATH (e_value=1e-21) Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1;; (*TAIR) AT4G10720.1 (e_value=8e-39) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=445;; (*ITAG) Solyc08g062360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48169401-48171051 transcript_region:SL2.40ch08:48169401..48171051+ go_terms:GO:0015276 functional_description:"Ankyrin repeat protein (AHRD V1 **-- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0015276 NbS00061828g0004.1 protein AED:0.01 eAED:0.01 QI:27|1|1|1|1|1|4|24|372; (*GB) gi|255581396|ref|XP_002531506.1| (e_value=0.0) Pectinesterase-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYZ3|PME53_ARATH (e_value=3e-161) Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1;; (*TAIR) AT5G19730.1 (e_value=2e-162) | Symbols: | Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383;; (*ITAG) Solyc02g075620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36355591-36357254 transcript_region:SL2.40ch02:36355591..36357254+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9SZT7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00015877g0007.1 protein AED:0.29 eAED:0.30 QI:0|0.57|0.5|0.87|0.71|0.62|8|0|432; (*GB) gi|359482287|ref|XP_002263129.2| (e_value=1e-147) PREDICTED: aspartic proteinase-like protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=3e-54) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT2G36670.1 (e_value=6e-134) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=512;; (*ITAG) Solyc09g008600.2.1 (e_value=1e-174) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00015877g0008.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0|2|0|73 NbS00043397g0001.1 protein AED:0.30 eAED:0.30 QI:587|1|0.88|1|1|1|9|0|355; (*GB) gi|224138688|ref|XP_002326665.1| (e_value=1e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7W2|NUDT8_ARATH (e_value=2e-134) Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2;; (*TAIR) AT5G47240.1 (e_value=1e-135) | Symbols: atnudt8, NUDT8 | nudix hydrolase homolog 8 | chr5:19183806-19185467 FORWARD LENGTH=369;; (*ITAG) Solyc08g078210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59208791-59212121 transcript_region:SL2.40ch08:59208791..59212121+ go_terms:GO:0051287,GO:0047631 functional_description:"Hydrolase NUDIX family protein (AHRD V1 ***- Q2A9R5_BRAOL); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbC25862805g0001.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|3|0|186; (*GB) gi|255555093|ref|XP_002518584.1| (e_value=8e-45) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LK57|PP226_ARATH (e_value=6e-38) Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1;; (*TAIR) AT3G13160.1 (e_value=5e-39) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394;; (*ITAG) Solyc02g079830.1.1 (e_value=2e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003966g0006.1 protein AED:0.12 eAED:0.12 QI:146|0.75|0.8|1|1|1|5|326|353; (*GB) gi|224098198|ref|XP_002311134.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C8G4|PLY4_ARATH (e_value=7e-53) Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1;; (*TAIR) AT3G55140.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:20438819-20440225 FORWARD LENGTH=331;; (*ITAG) Solyc04g010230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3556402-3561755 transcript_region:SL2.40ch04:3556402..3561755+ go_terms:GO:0030570 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LV13_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0030570 NbS00003966g0007.1 protein AED:0.34 eAED:0.34 QI:31|1|0.75|1|1|0.75|4|0|123; (*GB) gi|224109602|ref|XP_002315252.1| (e_value=8e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZ41|RL354_ARATH (e_value=2e-74) 60S ribosomal protein L35-4 OS=Arabidopsis thaliana GN=RPL35D PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=1e-75) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=6e-80) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00009975g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|696; (*GB) gi|224141479|ref|XP_002324099.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23169|PP353_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1;; (*TAIR) AT4G37170.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17498580-17500655 REVERSE LENGTH=691;; (*ITAG) Solyc01g095160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78287834-78290088 transcript_region:SL2.40ch01:78287834..78290088+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MB20_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00005828g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.14|1|1|1|7|0|957; (*GB) gi|356498972|ref|XP_003518319.1| (e_value=0.0) PREDICTED: ubiquitin-activating enzyme E1 2-like [Glycine max];; (*SWP) sp|P93028|UBE11_ARATH (e_value=0.0) Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1;; (*TAIR) AT2G30110.1 (e_value=0.0) | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activating enzyme 1 | chr2:12852632-12857369 REVERSE LENGTH=1080;; (*ITAG) Solyc06g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00005828g0005.1 protein AED:0.88 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|122 NbS00005828g0004.1 protein AED:0.09 eAED:0.12 QI:0|0|0.33|1|1|1|3|263|358; (*GB) gi|225445466|ref|XP_002285124.1| (e_value=2e-107) PREDICTED: chaperone protein dnaJ 49 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FH28|DNJ49_ARATH (e_value=3e-53) Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2;; (*TAIR) AT3G57340.2 (e_value=3e-79) | Symbols: | Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) | chr3:21219175-21220278 FORWARD LENGTH=367;; (*ITAG) Solyc12g099510.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64971202-64984594 transcript_region:SL2.40ch12:64971202..64984594- go_terms:GO:0005488,GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0005488,GO:0006457,GO:0031072 NbS00005828g0009.1 protein AED:0.19 eAED:0.19 QI:161|1|1|1|0.88|0.9|10|380|375; (*GB) gi|147776552|emb|CAN65127.1| (e_value=8e-168) hypothetical protein VITISV_005830 [Vitis vinifera];; (*SWP) sp|P0C895|Y2010_ARATH (e_value=3e-154) LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1;; (*TAIR) AT2G30105.1 (e_value=2e-155) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). | chr2:12849855-12851908 FORWARD LENGTH=367;; (*ITAG) Solyc06g007250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1304942-1310377 transcript_region:SL2.40ch06:1304942..1310377+ go_terms:GO:0019903 functional_description:"Leucine-rich repeat family protein (AHRD V1 ***- D7M0N4_ARALY); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0019903 NbS00005828g0015.1 protein AED:0.19 eAED:0.26 QI:0|0.66|0.75|1|0.66|0.75|4|250|126; (*GB) gi|224105919|ref|XP_002313979.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WUQ1|BAG1_ARATH (e_value=7e-19) BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT5G52060.1 (e_value=5e-20) | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342;; (*ITAG) Solyc06g007240.2.1 (e_value=6e-56) genomic_reference:SL2.40ch06 gene_region:1298332-1301740 transcript_region:SL2.40ch06:1298332..1301740+ go_terms:GO:0006915 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00031973g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.87|1|0.71|0.75|8|826|569; (*GB) gi|309401693|gb|ADO79932.1| (e_value=0.0) calcium-dependent protein kinase 10 [Nicotiana tabacum];; (*SWP) sp|A5A7I8|CDPK5_SOLTU (e_value=0.0) Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1;; (*TAIR) AT2G17290.1 (e_value=0.0) | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent protein kinase family protein | chr2:7517005-7519239 FORWARD LENGTH=544;; (*ITAG) Solyc01g112250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90084923-90090825 transcript_region:SL2.40ch01:90084923..90090825+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q7Y050_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00031973g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.66|1|0.6|0.5|6|0|199; (*GB) gi|225428330|ref|XP_002283109.1| (e_value=5e-106) PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera];; (*SWP) sp|Q949P3|Y2734_ARATH (e_value=4e-102) Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1;; (*TAIR) AT2G17340.1 (e_value=3e-103) | Symbols: | Uncharacterised conserved protein (UCP030210) | chr2:7541615-7544089 REVERSE LENGTH=367;; (*ITAG) Solyc10g074590.1.1 (e_value=8e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57465951-57473739 transcript_region:SL2.40ch10:57465951..57473739- go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase 4 (AHRD V1 **** B6TFD8_MAIZE); contains Interpro domain(s) IPR016949 Uncharacterised conserved protein UCP030210 "; GO:0005515,GO:0004594 NbS00031973g0002.1 protein AED:0.07 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|667|175; (*GB) gi|224132456|ref|XP_002328279.1| (e_value=9e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35320.1 (e_value=3e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16806139-16806582 REVERSE LENGTH=147;; (*ITAG) Solyc01g112260.2.1 (e_value=3e-61) genomic_reference:SL2.40ch01 gene_region:90097982-90098946 transcript_region:SL2.40ch01:90097982..90098946- functional_description:"Unknown Protein (AHRD V1)"; NbS00032493g0001.1 protein AED:0.10 eAED:0.10 QI:310|0|0.5|1|0|0.5|2|0|248; (*GB) gi|359806312|ref|NP_001241479.1| (e_value=2e-74) uncharacterized protein LOC100794851 [Glycine max];; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=4e-40) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=3e-41) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc11g011890.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4830659-4831399 transcript_region:SL2.40ch11:4830659..4831399- go_terms:GO:0005622 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00004618g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|2|0|443; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=4e-118) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=2e-106) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34138.1 (e_value=4e-40) | Symbols: UGT73B1 | UDP-glucosyl transferase 73B1 | chr4:16348267-16349858 REVERSE LENGTH=488;; (*ITAG) Solyc05g012670.1.1 (e_value=5e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5875384-5876718 transcript_region:SL2.40ch05:5875384..5876718+ go_terms:GO:0047209 functional_description:"Glucosyltransferase-3 (AHRD V1 **** Q8S9A6_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00036986g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|111; (*ITAG) Solyc04g053070.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00036986g0007.1 protein AED:0.13 eAED:0.13 QI:243|0.91|0.92|1|0.83|0.76|13|472|877; (*GB) gi|255548760|ref|XP_002515436.1| (e_value=1e-142) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q5U241|PD5BB_XENLA (e_value=9e-19) Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2;; (*TAIR) AT4G31880.1 (e_value=3e-89) | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873;; (*ITAG) Solyc06g065710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00020480g0003.1 protein AED:0.00 eAED:0.00 QI:442|1|1|1|1|1|2|310|253; (*GB) gi|225446577|ref|XP_002280074.1| (e_value=2e-82) PREDICTED: transcription factor bHLH30 [Vitis vinifera];; (*SWP) sp|Q9XEF0|BH051_ARATH (e_value=6e-31) Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1;; (*TAIR) AT2G40200.1 (e_value=4e-32) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:16791098-16792027 FORWARD LENGTH=254;; (*ITAG) Solyc07g053290.2.1 (e_value=3e-131) genomic_reference:SL2.40ch07 gene_region:59090474-59092673 transcript_region:SL2.40ch07:59090474..59092673+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *--* B4FMK3_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00026134g0012.1 protein AED:0.11 eAED:0.11 QI:296|1|1|1|1|1|2|435|108; (*GB) gi|225459824|ref|XP_002285918.1| (e_value=5e-40) PREDICTED: uncharacterized protein LOC100248789 [Vitis vinifera];; (*TAIR) AT1G20460.1 (e_value=8e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD LENGTH=106;; (*ITAG) Solyc12g094510.1.1 (e_value=2e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63072692-63075656 transcript_region:SL2.40ch12:63072692..63075656+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026134g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|0.6|1|0.75|0.8|5|0|714; (*GB) gi|350535467|ref|NP_001234196.1| (e_value=0.0) FtsH-like protein precursor [Solanum lycopersicum];; (*SWP) sp|O82150|FTSH_TOBAC (e_value=0.0) ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2;; (*TAIR) AT5G42270.1 (e_value=0.0) | Symbols: VAR1, FTSH5 | FtsH extracellular protease family | chr5:16902659-16905102 FORWARD LENGTH=704;; (*ITAG) Solyc04g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63573950-63577767 transcript_region:SL2.40ch04:63573950..63577767+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment) (AHRD V1 ***- FTSH_CAPAN); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00026134g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|255539176|ref|XP_002510653.1| (e_value=4e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G76240.1 (e_value=1e-57) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr1:28602949-28603875 REVERSE LENGTH=308;; (*ITAG) Solyc04g082270.2.1 (e_value=6e-103) genomic_reference:SL2.40ch04 gene_region:63587629-63589005 transcript_region:SL2.40ch04:63587629..63589005- functional_description:"CM0216.210.nc protein (AHRD V1 ***- B0BLH4_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00026134g0014.1 protein AED:0.15 eAED:0.15 QI:59|0.85|0.87|1|0.85|0.87|8|0|487; (*GB) gi|225459846|ref|XP_002285926.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At4g35230 isoform 1 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT4G35230.1 (e_value=0.0) | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755325-16758041 REVERSE LENGTH=512;; (*ITAG) Solyc04g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63577253-63583094 transcript_region:SL2.40ch04:63577253..63583094- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00028303g0011.1 protein AED:0.08 eAED:0.08 QI:67|0.82|0.72|1|0.78|0.68|29|0|3018; (*GB) gi|297742188|emb|CBI33975.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q709C8|VP13C_HUMAN (e_value=4e-18) Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1;; (*TAIR) AT4G17140.3 (e_value=0.0) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00028303g0001.1 protein AED:0.09 eAED:0.17 QI:0|0|0|1|1|1|3|0|314; (*GB) gi|224064778|ref|XP_002301558.1| (e_value=3e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54KA7|SECG_DICDI (e_value=9e-23) Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=3e-19) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc09g074290.1.1 (e_value=2e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61580158-61581582 transcript_region:SL2.40ch09:61580158..61581582- go_terms:GO:0008134 functional_description:"Ankyrin repeat-containing protein (AHRD V1 **-- D3BAQ3_POLPA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00010914g0004.1 protein AED:0.17 eAED:0.17 QI:190|1|1|1|1|1|17|306|483; (*GB) gi|359477184|ref|XP_002262991.2| (e_value=0.0) PREDICTED: protein pleiotropic regulatory locus 1-like [Vitis vinifera];; (*SWP) sp|Q42384|PRL1_ARATH (e_value=0.0) Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1;; (*TAIR) AT4G15900.1 (e_value=0.0) | Symbols: PRL1 | pleiotropic regulatory locus 1 | chr4:9023775-9027443 FORWARD LENGTH=486;; (*ITAG) Solyc01g094480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77700642-77708854 transcript_region:SL2.40ch01:77700642..77708854+ go_terms:GO:0003714 functional_description:"Pre-mRNA-splicing factor prp46 (AHRD V1 **-- B6K7I2_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00042661g0021.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|1|0.66|3|0|514; (*GB) gi|225434871|ref|XP_002280683.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Vitis vinifera];; (*SWP) sp|Q9FGR2|PP436_ARATH (e_value=1e-169) Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1;; (*TAIR) AT5G59600.1 (e_value=1e-170) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:24011315-24012919 REVERSE LENGTH=534;; (*ITAG) Solyc06g005690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:753766-755505 transcript_region:SL2.40ch06:753766..755505- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSG6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00042661g0017.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|1|1|2|1172|254; (*GB) gi|71067056|dbj|BAE16280.1| (e_value=5e-157) NbPCL1 [Nicotiana benthamiana];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=1e-21) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G46640.3 (e_value=3e-77) | Symbols: PCL1 | Homeodomain-like superfamily protein | chr3:17183248-17184989 FORWARD LENGTH=324;; (*ITAG) Solyc06g005680.2.1 (e_value=4e-113) genomic_reference:SL2.40ch06 gene_region:748174-749366 transcript_region:SL2.40ch06:748174..749366+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00042661g0018.1 protein AED:0.15 eAED:0.16 QI:0|0.77|0.6|1|1|1|10|38|983; (*GB) gi|225434877|ref|XP_002283191.1| (e_value=0.0) PREDICTED: pumilio homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9ZW06|PUM2_ARATH (e_value=0.0) Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1;; (*TAIR) AT2G29190.2 (e_value=0.0) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972;; (*ITAG) Solyc06g005670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:735456-743778 transcript_region:SL2.40ch06:735456..743778+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00042661g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|297746034|emb|CBI16090.3| (e_value=8e-163) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LIQ7|PP252_ARATH (e_value=3e-96) Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1;; (*TAIR) AT3G24000.1 (e_value=4e-97) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8672774-8674881 FORWARD LENGTH=665;; (*ITAG) Solyc06g005700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:756439-758247 transcript_region:SL2.40ch06:756439..758247+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00042661g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.4|1|1|1|5|0|453; (*GB) gi|225434849|ref|XP_002282730.1| (e_value=5e-135) PREDICTED: uncharacterized protein LOC100246732 [Vitis vinifera];; (*TAIR) AT3G46780.1 (e_value=4e-103) | Symbols: PTAC16 | plastid transcriptionally active 16 | chr3:17228766-17231021 FORWARD LENGTH=510;; (*ITAG) Solyc06g005710.2.1 (e_value=1e-148) genomic_reference:SL2.40ch06 gene_region:759915-763838 transcript_region:SL2.40ch06:759915..763838+ go_terms:GO:0008152 functional_description:"cDNA clone 002-143-C11 full insert sequence (AHRD V1 *--- B7F1B2_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00042661g0020.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|0|0|2|0|96 NbS00042661g0019.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|0|0|3|0|80 NbS00037239g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|257; (*GB) gi|225432588|ref|XP_002277866.1| (e_value=2e-80) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9ZQ91|CXE7_ARATH (e_value=3e-57) Probable carboxylesterase 7 OS=Arabidopsis thaliana GN=CXE7 PE=2 SV=1;; (*TAIR) AT2G03550.1 (e_value=2e-58) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1077080-1078018 FORWARD LENGTH=312;; (*ITAG) Solyc05g051660.1.1 (e_value=4e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61195972-61196940 transcript_region:SL2.40ch05:61195972..61196940+ go_terms:GO:0004091 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6T2M3_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00050215g0006.1 protein AED:0.75 eAED:0.75 QI:75|0|0|0.33|1|1|3|0|72 NbS00050215g0007.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|3|0|205; (*GB) gi|113205244|gb|AAT39318.2| (e_value=8e-41) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=6e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00050215g0004.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|59; (*ITAG) Solyc08g061040.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:43642043-43643346 transcript_region:SL2.40ch08:43642043..43643346- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00050215g0005.1 protein AED:0.39 eAED:0.77 QI:39|0|0|1|0|0|2|0|56 NbS00004296g0001.1 protein AED:0.06 eAED:0.06 QI:36|1|0.5|1|0|0|2|0|101 NbS00002011g0109.1 protein AED:0.15 eAED:0.15 QI:124|1|0.5|1|1|1|4|337|206 NbS00002011g0107.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.5|1|1|2|0|303 NbS00002011g0104.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|178 NbS00027193g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=2e-70) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=5e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbC25960916g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|0|0.66|3|0|127; (*GB) gi|297740503|emb|CBI30685.3| (e_value=1e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LP46|SCAR3_ARATH (e_value=4e-47) Protein SCAR3 OS=Arabidopsis thaliana GN=SCAR3 PE=1 SV=1;; (*TAIR) AT1G29170.1 (e_value=3e-48) | Symbols: WAVE2, ATSCAR3, SCAR3 | SCAR family protein | chr1:10190352-10194900 REVERSE LENGTH=1020;; (*ITAG) Solyc02g076840.2.1 (e_value=2e-73) genomic_reference:SL2.40ch02 gene_region:36537398-36546762 transcript_region:SL2.40ch02:36537398..36546762+ functional_description:"Wiskott-Aldrich syndrome protein family member 2 (AHRD V1 *--- WASF2_MOUSE)"; NbS00023303g0003.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|70 NbS00023303g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|457; (*GB) gi|147856334|emb|CAN81778.1| (e_value=3e-99) hypothetical protein VITISV_034283 [Vitis vinifera];; (*TAIR) AT1G29760.1 (e_value=2e-73) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr1:10422381-10424116 FORWARD LENGTH=526;; (*ITAG) Solyc07g062230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62243794-62246227 transcript_region:SL2.40ch07:62243794..62246227+ functional_description:"Seipin (AHRD V1 *-*- Q5BIQ8_BOVIN); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00023303g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|92 NbS00023303g0107.1 protein AED:0.04 eAED:0.06 QI:0|0.5|0|0.66|0.5|0.33|3|0|233 NbS00041766g0007.1 protein AED:0.01 eAED:0.03 QI:0|1|0|1|1|1|2|0|500; (*GB) gi|225459856|ref|XP_002285930.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262535 [Vitis vinifera];; (*TAIR) AT1G76250.1 (e_value=7e-170) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:28606561-28608942 REVERSE LENGTH=434;; (*ITAG) Solyc04g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63595005-63598411 transcript_region:SL2.40ch04:63595005..63598411- functional_description:"AT1G76250-like protein (Fragment) (AHRD V1 *-*- D6PP03_9BRAS)"; NbS00041766g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.7|0.81|1|1|1|11|169|357; (*GB) gi|255539182|ref|XP_002510656.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G42430.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891512-15894322 FORWARD LENGTH=426;; (*ITAG) Solyc04g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63599630-63604934 transcript_region:SL2.40ch04:63599630..63604934- functional_description:"Os03g0133300 protein (Fragment) (AHRD V1 ***- Q0DVF0_ORYSJ)"; NbS00041766g0009.1 protein AED:0.27 eAED:0.41 QI:0|0.72|0.58|1|0.63|0.66|12|0|341; (*GB) gi|302141668|emb|CBI18871.3| (e_value=3e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NPN9|DWA2_ARATH (e_value=3e-127) WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1;; (*TAIR) AT1G20540.1 (e_value=1e-138) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:7112652-7115191 FORWARD LENGTH=351;; (*ITAG) Solyc04g082300.2.1 (e_value=2e-176) genomic_reference:SL2.40ch04 gene_region:63607549-63614167 transcript_region:SL2.40ch04:63607549..63614167- go_terms:GO:0005515,GO:0000166 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* D0NGC2_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00034174g0013.1 protein AED:0.11 eAED:0.11 QI:366|1|1|1|1|1|11|10|419; (*GB) gi|225469268|ref|XP_002267661.1| (e_value=7e-176) PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=4e-169) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=3e-170) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc07g065130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64254256-64257617 transcript_region:SL2.40ch07:64254256..64257617- go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00034174g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.5|4|0|351; (*GB) gi|356552799|ref|XP_003544750.1| (e_value=0.0) PREDICTED: indole-3-acetate O-methyltransferase 1-like [Glycine max];; (*SWP) sp|Q9FLN8|IAMT1_ARATH (e_value=0.0) Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1;; (*TAIR) AT5G55250.1 (e_value=0.0) | Symbols: IAMT1 | IAA carboxylmethyltransferase 1 | chr5:22407589-22410854 REVERSE LENGTH=386;; (*ITAG) Solyc07g064990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64155555-64158080 transcript_region:SL2.40ch07:64155555..64158080- go_terms:GO:0051749,GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein (AHRD V1 **** Q8LAR1_ARATH); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0051749,GO:0008757 NbS00034174g0003.1 protein AED:0.23 eAED:0.23 QI:734|0.75|0.8|1|0.25|0.4|5|144|115; (*GB) gi|147811108|emb|CAN61352.1| (e_value=1e-23) hypothetical protein VITISV_027758 [Vitis vinifera];; (*TAIR) AT5G55410.1 (e_value=6e-19) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:22460677-22461081 FORWARD LENGTH=107;; (*ITAG) Solyc07g065110.1.1 (e_value=6e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64230824-64231138 transcript_region:SL2.40ch07:64230824..64231138+ go_terms:GO:0008289,GO:0005319 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **-* D7MKH4_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005319 NbS00034174g0002.1 protein AED:0.32 eAED:0.32 QI:331|0.87|0.77|1|1|1|9|0|746; (*GB) gi|83281191|dbj|BAE53680.1| (e_value=0.0) putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum];; (*SWP) sp|Q9SZ11|GLPQ2_ARATH (e_value=0.0) Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3;; (*TAIR) AT4G26690.1 (e_value=0.0) | Symbols: SHV3, MRH5, GPDL2 | PLC-like phosphodiesterase family protein | chr4:13456793-13459890 REVERSE LENGTH=759;; (*ITAG) Solyc07g065120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64242568-64249740 transcript_region:SL2.40ch07:64242568..64249740+ go_terms:GO:0016301 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7MKI0_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0016301 NbS00046567g0006.1 protein AED:0.09 eAED:0.10 QI:0|0.33|0.25|1|0.33|0|4|0|286; (*GB) gi|48209882|gb|AAT40488.1| (e_value=2e-142) putative DNA-binding protein [Solanum demissum];; (*SWP) sp|Q8LC03|ATB13_ARATH (e_value=6e-106) Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2;; (*TAIR) AT1G69780.1 (e_value=5e-107) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294;; (*ITAG) Solyc05g007180.2.1 (e_value=1e-145) genomic_reference:SL2.40ch05 gene_region:1796893-1799609 transcript_region:SL2.40ch05:1796893..1799609+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0043565 NbS00032156g0003.1 protein AED:0.01 eAED:0.01 QI:285|1|0.5|1|1|1|2|0|246; (*GB) gi|225436656|ref|XP_002280518.1| (e_value=3e-103) PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera];; (*SWP) sp|Q1PFH7|PPR89_ARATH (e_value=1e-86) Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1;; (*TAIR) AT1G62350.1 (e_value=1e-87) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23056653-23057935 FORWARD LENGTH=196;; (*ITAG) Solyc08g061590.2.1 (e_value=1e-127) genomic_reference:SL2.40ch08 gene_region:46366044-46367838 transcript_region:SL2.40ch08:46366044..46367838- go_terms:GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270 NbS00014651g0015.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|1|1|5|0|217; (*GB) gi|169908354|gb|ACB05475.1| (e_value=4e-118) LIM domain protein 2b [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=5e-63) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G61230.1 (e_value=1e-102) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213;; (*ITAG) Solyc01g094320.2.1 (e_value=4e-124) genomic_reference:SL2.40ch01 gene_region:77600987-77603710 transcript_region:SL2.40ch01:77600987..77603710- go_terms:GO:0042802 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00014651g0014.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|134; (*GB) gi|147785185|emb|CAN75437.1| (e_value=2e-35) hypothetical protein VITISV_000833 [Vitis vinifera];; (*SWP) sp|O80837|REMO_ARATH (e_value=1e-27) Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1;; (*TAIR) AT3G48940.1 (e_value=3e-29) | Symbols: | Remorin family protein | chr3:18142863-18144163 REVERSE LENGTH=175;; (*ITAG) Solyc05g048820.2.1 (e_value=5e-46) genomic_reference:SL2.40ch05 gene_region:58663878-58666484 transcript_region:SL2.40ch05:58663878..58666484+ go_terms:GO:0005515,GO:0003677 functional_description:"Remorin 2 (AHRD V1 ***- Q9XEX9_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0005515,GO:0003677 NbS00014651g0022.1 protein AED:0.08 eAED:0.08 QI:85|0.33|0.5|0.75|1|0.75|4|0|320; (*GB) gi|255541536|ref|XP_002511832.1| (e_value=1e-108) r2r3-myb transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=3e-50) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT3G61250.1 (e_value=1e-95) | Symbols: AtMYB17, MYB17 | myb domain protein 17 | chr3:22671306-22672551 FORWARD LENGTH=299;; (*ITAG) Solyc05g048830.2.1 (e_value=2e-143) genomic_reference:SL2.40ch05 gene_region:58666713-58668935 transcript_region:SL2.40ch05:58666713..58668935- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00014651g0017.1 protein AED:0.12 eAED:0.13 QI:74|1|0.66|1|1|1|3|0|269; (*GB) gi|225454190|ref|XP_002272636.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera];; (*TAIR) AT1G01730.1 (e_value=1e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:271002-271872 FORWARD LENGTH=224;; (*ITAG) Solyc05g049880.2.1 (e_value=3e-94) genomic_reference:SL2.40ch05 gene_region:58766954-58775362 transcript_region:SL2.40ch05:58766954..58775362- functional_description:"Unknown Protein (AHRD V1)"; NbS00014651g0019.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|0|0|2|0|126; (*GB) gi|3810591|gb|AAC69373.1| (e_value=8e-18) 1,4-beta-xylan endohydrolase [Arabidopsis thaliana];; (*TAIR) AT2G14690.1 (e_value=3e-20) | Symbols: | Glycosyl hydrolase superfamily protein | chr2:6283911-6286012 REVERSE LENGTH=570;; (*ITAG) Solyc05g051260.2.1 (e_value=3e-21) genomic_reference:SL2.40ch05 gene_region:60688299-60691358 transcript_region:SL2.40ch05:60688299..60691358+ go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00014651g0018.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|88 NbS00043625g0006.1 protein AED:0.23 eAED:0.31 QI:0|0.69|0.71|0.92|0.76|0.78|14|23|841; (*GB) gi|359493967|ref|XP_002283806.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243589 [Vitis vinifera];; (*TAIR) AT5G07400.1 (e_value=0.0) | Symbols: | forkhead-associated domain-containing protein / FHA domain-containing protein | chr5:2340814-2345321 FORWARD LENGTH=1084;; (*ITAG) Solyc03g117960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60986350-60996371 transcript_region:SL2.40ch03:60986350..60996371- go_terms:GO:0005634,GO:0016818 functional_description:"Tyrosyl-DNA phosphodiesterase family protein (AHRD V1 *-*- B6AFR8_CRYMR); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0005634,GO:0016818 NbC23843582g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|70; (*GB) gi|225439584|ref|XP_002265642.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100243041 isoform 1 [Vitis vinifera];; (*TAIR) AT5G05360.2 (e_value=2e-24) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:1588356-1589044 FORWARD LENGTH=153;; (*ITAG) Solyc06g050730.2.1 (e_value=2e-29) genomic_reference:SL2.40ch06 gene_region:29994029-29995792 transcript_region:SL2.40ch06:29994029..29995792- functional_description:"Genomic DNA chromosome 5 TAC clone K18I23 (AHRD V1 *-*- Q9FLB8_ARATH); contains Interpro domain(s) IPR006597 Sel1-like "; NbS00022414g0007.1 protein AED:0.00 eAED:0.00 QI:73|1|1|1|1|0.66|3|310|139; (*GB) gi|255646559|gb|ACU23754.1| (e_value=6e-25) unknown [Glycine max];; (*TAIR) AT5G49320.1 (e_value=4e-13) | Symbols: | Protein of unknown function (DUF1218) | chr5:19995083-19996214 REVERSE LENGTH=257;; (*ITAG) Solyc01g060450.2.1 (e_value=5e-38) genomic_reference:SL2.40ch01 gene_region:63841510-63843144 transcript_region:SL2.40ch01:63841510..63843144+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00022414g0008.1 protein AED:0.20 eAED:0.20 QI:138|0.90|0.91|1|0.81|0.66|12|627|546; (*GB) gi|119866037|gb|ABM05488.1| (e_value=0.0) Impa2 [Nicotiana benthamiana];; (*SWP) sp|Q9SLX0|IMA1B_ORYSJ (e_value=0.0) Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc01g060470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:63867613-63872933 transcript_region:SL2.40ch01:63867613..63872933+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00033043g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00033043g0004.1 protein AED:0.60 eAED:0.60 QI:0|0.33|0.25|0.5|0|0.5|4|0|102 NbS00003420g0016.1 protein AED:0.15 eAED:0.15 QI:81|1|1|1|0.8|1|6|333|237; (*GB) gi|358248410|ref|NP_001239621.1| (e_value=5e-156) uncharacterized protein LOC100808705 [Glycine max];; (*SWP) sp|Q9SIP7|RS31_ARATH (e_value=2e-146) 40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=1 SV=1;; (*TAIR) AT2G31610.1 (e_value=2e-147) | Symbols: | Ribosomal protein S3 family protein | chr2:13450384-13451669 FORWARD LENGTH=250;; (*ITAG) Solyc07g041310.2.1 (e_value=9e-160) genomic_reference:SL2.40ch07 gene_region:49600647-49604920 transcript_region:SL2.40ch07:49600647..49604920- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TLR8_ELAGV); contains Interpro domain(s) IPR005703 Ribosomal protein S3, eukaryotic/archaeal "; GO:0003735 NbS00003420g0014.1 protein AED:0.55 eAED:0.56 QI:0|0|0|0.28|0.83|0.71|7|0|290; (*ITAG) Solyc01g059760.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003420g0015.1 protein AED:0.32 eAED:0.65 QI:0|0|0|1|0|0|3|0|100; (*ITAG) Solyc06g035670.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21393989-21394922 transcript_region:SL2.40ch06:21393989..21394922- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00003420g0013.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|95; (*ITAG) Solyc01g094420.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00041384g0004.1 protein AED:0.03 eAED:0.03 QI:195|1|1|1|0.75|0.61|13|272|421; (*GB) gi|359494563|ref|XP_002266113.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254368 [Vitis vinifera];; (*TAIR) AT1G16290.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE LENGTH=419;; (*ITAG) Solyc07g066640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65220148-65226629 transcript_region:SL2.40ch07:65220148..65226629- functional_description:"F3O9.9 protein (AHRD V1 ***- Q9SA28_ARATH); contains Interpro domain(s) IPR008258 Lytic transglycosylase-like, catalytic "; NbS00005263g0003.1 protein AED:0.21 eAED:0.21 QI:605|1|1|1|0.72|0.75|12|462|454; (*GB) gi|12230709|sp|O24160.1|TGA21_TOBAC (e_value=0.0) RecName: Full=TGACG-sequence-specific DNA-binding protein TGA-2.1; Short=TGA2.1;; (*SWP) sp|O24160|TGA21_TOBAC (e_value=0.0) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT3G12250.2 (e_value=3e-154) | Symbols: TGA6, BZIP45 | TGACG motif-binding factor 6 | chr3:3906351-3908583 FORWARD LENGTH=330;; (*ITAG) Solyc10g080770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61293121-61301987 transcript_region:SL2.40ch10:61293121..61301987+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00005263g0103.1 protein AED:0.21 eAED:0.21 QI:241|1|0.75|1|0.66|0.75|4|0|179 NbS00010106g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|118 NbS00013250g0009.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|1|0.87|8|0|466; (*GB) gi|255546541|ref|XP_002514330.1| (e_value=0.0) aldehyde dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q56YU0|AL2C4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2;; (*TAIR) AT3G24503.1 (e_value=0.0) | Symbols: ALDH2C4, ALDH1A, REF1 | aldehyde dehydrogenase 2C4 | chr3:8919732-8923029 REVERSE LENGTH=501;; (*ITAG) Solyc12g007030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1463785-1469521 transcript_region:SL2.40ch12:1463785..1469521- go_terms:GO:0055114 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 ***- C5I9X1_ARTAN); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0055114 NbS00013250g0008.1 protein AED:0.05 eAED:0.05 QI:28|1|1|1|1|1|5|101|694; (*GB) gi|225445332|ref|XP_002281524.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245597 [Vitis vinifera];; (*TAIR) AT4G13370.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF936) | chr4:7777916-7780334 REVERSE LENGTH=673;; (*ITAG) Solyc12g007020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1459084-1462279 transcript_region:SL2.40ch12:1459084..1462279+ functional_description:"cDNA clone J033084B06 full insert sequence (AHRD V1 *-*- B7ESP0_ORYSJ); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00031995g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|0|377; (*GB) gi|386870479|gb|AFJ42570.1| (e_value=0.0) beta-actin [Sesamum indicum];; (*SWP) sp|P30173|ACT13_SOLTU (e_value=0.0) Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc04g071260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55789259-55790792 transcript_region:SL2.40ch04:55789259..55790792- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q5XPX5_SACOF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00031995g0001.1 protein AED:0.32 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|65; (*GB) gi|15148777|gb|AAK84834.1| (e_value=2e-20) actin [Elaeis oleifera];; (*SWP) sp|P30169|ACT7_SOLTU (e_value=3e-21) Actin-75 OS=Solanum tuberosum GN=AC75 PE=3 SV=1;; (*TAIR) AT3G53750.1 (e_value=2e-21) | Symbols: ACT3 | actin 3 | chr3:19915924-19917371 FORWARD LENGTH=377;; (*ITAG) Solyc10g086460.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64597752-64599548 transcript_region:SL2.40ch10:64597752..64599548+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q9SAR7_STRAF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00007100g0001.1 protein AED:0.24 eAED:0.39 QI:0|0|0|1|0|0|4|0|158; (*GB) gi|302143000|emb|CBI20295.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G27480.2 (e_value=2e-42) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc12g013850.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4639057-4641430 transcript_region:SL2.40ch12:4639057..4641430- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00035572g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.77|0.7|1|0.66|0.8|10|336|508; (*GB) gi|224089605|ref|XP_002308775.1| (e_value=1e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU25|T2FA_ARATH (e_value=3e-91) Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1;; (*TAIR) AT4G12610.1 (e_value=5e-20) | Symbols: RAP74, ATRAP74 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | chr4:7455565-7457465 FORWARD LENGTH=400;; (*ITAG) Solyc11g012150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5083236-5090295 transcript_region:SL2.40ch11:5083236..5090295- go_terms:GO:0005634,GO:0006367 functional_description:"Transcription initiation factor IIF alpha subunit (AHRD V1 ***- B6T7E5_MAIZE); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit "; GO:0005634,GO:0006367 NbS00030070g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|105; (*GB) gi|297737946|emb|CBI27147.3| (e_value=3e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=3e-70) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=8e-68) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00007629g0002.1 protein AED:0.21 eAED:0.24 QI:0|1|0|1|1|1|2|0|176; (*GB) gi|147811594|emb|CAN68183.1| (e_value=3e-64) hypothetical protein VITISV_028562 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=2e-56) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G05250.1 (e_value=1e-49) | Symbols: | Peroxidase superfamily protein | chr1:1525924-1527169 REVERSE LENGTH=325;; (*ITAG) Solyc11g007210.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1628496-1629588 transcript_region:SL2.40ch11:1628496..1629588- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B4FSK9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00007629g0007.1 protein AED:0.38 eAED:0.38 QI:54|1|1|1|0.5|1|3|348|117; (*GB) gi|297820384|ref|XP_002878075.1| (e_value=7e-39) hypothetical protein ARALYDRAFT_486064 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G56240.1 (e_value=5e-41) | Symbols: CCH | copper chaperone | chr3:20863460-20864402 REVERSE LENGTH=121;; (*ITAG) Solyc11g007200.1.1 (e_value=1e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1621986-1623966 transcript_region:SL2.40ch11:1621986..1623966+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *-*- D3GC04_9ROSI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00007629g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|343; (*GB) gi|147811594|emb|CAN68183.1| (e_value=8e-137) hypothetical protein VITISV_028562 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=7e-95) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G44970.1 (e_value=4e-85) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc11g007210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1628496-1629588 transcript_region:SL2.40ch11:1628496..1629588- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B4FSK9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00007629g0103.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|698 NbS00007629g0113.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.33|0.83|1|1|6|27|141 NbS00007629g0117.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|2|3|453 NbS00007629g0101.1 protein AED:0.29 eAED:0.29 QI:291|1|0.85|1|0.83|0.71|7|0|654 NbS00007629g0229.1 protein AED:0.10 eAED:0.11 QI:4524|0.92|0.95|1|0.77|0.65|41|205|1462 NbS00007629g0231.1 protein AED:0.39 eAED:0.41 QI:0|0.5|0.52|0.94|0.43|0.52|17|0|416 NbS00007629g0226.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|1|1|4|0|139 NbS00007629g0232.1 protein AED:0.02 eAED:0.09 QI:0|0|0|1|0.66|0.5|4|0|948 NbS00007629g0225.1 protein AED:0.43 eAED:0.43 QI:46|0.33|0.25|0.5|1|1|4|0|264 NbS00009377g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.25|4|0|1053; (*GB) gi|255572272|ref|XP_002527075.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g031790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:17701100-17704661 transcript_region:SL2.40ch02:17701100..17704661+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00009377g0011.1 protein AED:0.02 eAED:0.02 QI:261|1|1|1|1|1|2|1648|108; (*GB) gi|224129014|ref|XP_002320479.1| (e_value=1e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55140.1 (e_value=2e-47) | Symbols: | ribosomal protein L30 family protein | chr5:22381370-22381787 FORWARD LENGTH=109;; (*ITAG) Solyc02g068770.2.1 (e_value=3e-61) genomic_reference:SL2.40ch02 gene_region:33264577-33268399 transcript_region:SL2.40ch02:33264577..33268399+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L30 (AHRD V1 --*- C0B6M9_9FIRM); contains Interpro domain(s) IPR005996 Ribosomal protein L30, bacterial-type "; GO:0005840,GO:0015934 NbS00020418g0005.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|83 NbS00020418g0007.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|356505250|ref|XP_003521405.1| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100792662 [Glycine max];; (*TAIR) AT5G03380.1 (e_value=5e-19) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:832400-834301 REVERSE LENGTH=392;; (*ITAG) Solyc10g084000.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63001705-63003208 transcript_region:SL2.40ch10:63001705..63003208+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein-like (AHRD V1 *-*- Q6K9R4_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00020418g0008.1 protein AED:0.10 eAED:0.11 QI:0|1|0|1|1|1|2|0|212; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-40) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00019981g0004.1 protein AED:0.20 eAED:0.21 QI:331|1|0.5|1|0|0.5|2|0|389; (*GB) gi|296087591|emb|CBI34847.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q02527|MGAT3_RAT (e_value=1e-17) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT3G27540.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr3:10205489-10206888 FORWARD LENGTH=390;; (*ITAG) Solyc12g035470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25089211-25090913 transcript_region:SL2.40ch12:25089211..25090913+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7M6J9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00019981g0014.1 protein AED:0.19 eAED:0.25 QI:0|0|0|0.8|0.75|0.6|5|0|537; (*GB) gi|356573355|ref|XP_003554827.1| (e_value=5e-34) PREDICTED: uncharacterized protein LOC100782246 [Glycine max];; (*TAIR) AT3G27550.1 (e_value=2e-28) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:10208010-10209899 REVERSE LENGTH=491;; (*ITAG) Solyc07g047900.2.1 (e_value=2e-109) genomic_reference:SL2.40ch07 gene_region:56430159-56433693 transcript_region:SL2.40ch07:56430159..56433693- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00025191g0012.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.25|1|0.66|0.75|4|0|312; (*GB) gi|255561000|ref|XP_002521512.1| (e_value=3e-166) Peroxidase 72 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=6e-146) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=4e-147) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc02g062510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28779682-28781973 transcript_region:SL2.40ch02:28779682..28781973- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00025191g0002.1 protein AED:0.22 eAED:0.22 QI:139|1|0.5|1|1|1|2|0|149; (*GB) gi|225431279|ref|XP_002275676.1| (e_value=2e-59) PREDICTED: uncharacterized protein LOC100267751 [Vitis vinifera];; (*TAIR) AT5G49410.2 (e_value=9e-61) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20032901-20033751 FORWARD LENGTH=145;; (*ITAG) Solyc02g062530.2.1 (e_value=2e-71) genomic_reference:SL2.40ch02 gene_region:28798345-28800697 transcript_region:SL2.40ch02:28798345..28800697- functional_description:"Os03g0852500 protein (Fragment) (AHRD V1 ***- Q0DLQ0_ORYSJ)"; NbS00025191g0011.1 protein AED:0.12 eAED:0.12 QI:115|1|1|1|0.93|0.93|16|527|571; (*GB) gi|225431259|ref|XP_002268002.1| (e_value=0.0) PREDICTED: d-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O23240|D2HDH_ARATH (e_value=0.0) D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=D2HGDH PE=1 SV=3;; (*TAIR) AT4G36400.2 (e_value=0.0) | Symbols: | FAD-linked oxidases family protein | chr4:17197265-17200472 FORWARD LENGTH=559;; (*ITAG) Solyc02g062430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28607545-28618059 transcript_region:SL2.40ch02:28607545..28618059+ go_terms:GO:0051990 functional_description:"D-lactate dehydrogenase 2 mitochondrial (AHRD V1 **-* A5DXM0_LODEL); contains Interpro domain(s) IPR004113 FAD-linked oxidase, C-terminal "; GO:0051990 NbS00018033g0002.1 protein AED:0.44 eAED:0.46 QI:0|0|0|0.6|1|1|5|0|156; (*ITAG) Solyc10g049530.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00024852g0001.1 protein AED:0.11 eAED:0.11 QI:285|0.5|1|1|1|1|3|142|569; (*GB) gi|255553847|ref|XP_002517964.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT4G03400.1 (e_value=0.0) | Symbols: DFL2, GH3-10 | Auxin-responsive GH3 family protein | chr4:1497675-1499729 REVERSE LENGTH=591;; (*ITAG) Solyc07g054580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60178400-60182243 transcript_region:SL2.40ch07:60178400..60182243- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9N2A3_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00030766g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|416; (*GB) gi|359478333|ref|XP_002269410.2| (e_value=1e-143) PREDICTED: CBL-interacting serine/threonine-protein kinase 10 isoform 3 [Vitis vinifera];; (*SWP) sp|Q9C562|CIPKA_ARATH (e_value=5e-134) CBL-interacting serine/threonine-protein kinase 10 OS=Arabidopsis thaliana GN=CIPK10 PE=1 SV=1;; (*TAIR) AT5G58380.1 (e_value=4e-135) | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting protein 1 | chr5:23597092-23598531 REVERSE LENGTH=479;; (*ITAG) Solyc06g007430.1.1 (e_value=5e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1447079-1448515 transcript_region:SL2.40ch06:1447079..1448515+ go_terms:GO:0004711 functional_description:"CBL-interacting protein kinase 11 (AHRD V1 **** C4P7W0_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00050440g0001.1 protein AED:0.20 eAED:0.42 QI:0|0|0|0.5|1|1|4|0|241; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00005511g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.16|0.83|0|0.33|6|0|209; (*GB) gi|224144161|ref|XP_002325205.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q18779|SQV7_CAEEL (e_value=2e-18) UDP-sugar transporter sqv-7 OS=Caenorhabditis elegans GN=sqv-7 PE=1 SV=1;; (*TAIR) AT4G32272.2 (e_value=7e-86) | Symbols: | Nucleotide/sugar transporter family protein | chr4:15577195-15579689 REVERSE LENGTH=359;; (*ITAG) Solyc07g007990.2.1 (e_value=2e-124) genomic_reference:SL2.40ch07 gene_region:2685699-2689886 transcript_region:SL2.40ch07:2685699..2689886- go_terms:GO:0005463 functional_description:"UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (AHRD V1 **** C1BM09_OSMMO); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005463 NbS00009301g0005.1 protein AED:0.26 eAED:0.27 QI:0|0.45|0.5|0.91|0.63|0.58|12|310|383; (*GB) gi|77999273|gb|ABB16983.1| (e_value=3e-147) unknown [Solanum tuberosum];; (*SWP) sp|Q6UNT2|RL5_CUCSA (e_value=3e-140) 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1;; (*TAIR) AT5G39740.2 (e_value=4e-136) | Symbols: RPL5B | ribosomal protein L5 B | chr5:15903484-15905185 FORWARD LENGTH=301;; (*ITAG) Solyc09g020130.2.1 (e_value=1e-155) genomic_reference:SL2.40ch09 gene_region:18614085-18616675 transcript_region:SL2.40ch09:18614085..18616675+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic "; GO:0005840 NbS00009301g0002.1 protein AED:0.21 eAED:0.21 QI:299|0.66|0.7|1|1|1|10|0|292; (*GB) gi|388500596|gb|AFK38364.1| (e_value=1e-153) unknown [Lotus japonicus];; (*SWP) sp|Q4V7Z0|GPN3_XENLA (e_value=3e-80) GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1;; (*TAIR) AT4G12790.5 (e_value=5e-133) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7517280-7518892 REVERSE LENGTH=271;; (*ITAG) Solyc09g020140.2.1 (e_value=3e-166) genomic_reference:SL2.40ch09 gene_region:18639148-18643856 transcript_region:SL2.40ch09:18639148..18643856- go_terms:GO:0005515 functional_description:"GPN-loop GTPase 3 (AHRD V1 ***- D3BV94_POLPA); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515 NbS00045992g0004.1 protein AED:0.10 eAED:0.20 QI:0|0.25|0|1|0.5|0.2|5|0|202; (*GB) gi|357485613|ref|XP_003613094.1| (e_value=9e-52) Ovarian cancer-associated gene 2 protein-like protein [Medicago truncatula];; (*TAIR) AT4G24380.1 (e_value=1e-41) | Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234;; (*ITAG) Solyc11g010420.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3485517-3488338 transcript_region:SL2.40ch11:3485517..3488338+ go_terms:GO:0017171 functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; GO:0017171 NbS00055240g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|224140635|ref|XP_002323687.1| (e_value=9e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=7e-67) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc10g074820.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57851557-57852507 transcript_region:SL2.40ch10:57851557..57852507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00002046g0105.1 protein AED:0.19 eAED:0.19 QI:582|0.88|0.9|1|0.77|0.9|10|225|387 NbS00002046g0207.1 protein AED:0.42 eAED:0.45 QI:0|1|0|1|1|1|2|0|119 NbS00002046g0208.1 protein AED:0.43 eAED:0.43 QI:0|1|0.33|1|1|0.33|3|0|118 NbS00017482g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.9|0.72|0.90|0.8|0.81|11|0|346; (*GB) gi|225443668|ref|XP_002263226.1| (e_value=5e-179) PREDICTED: dual specificity protein kinase shkB [Vitis vinifera];; (*SWP) sp|Q7T6Y2|YR831_MIMIV (e_value=3e-42) Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2;; (*TAIR) AT3G58760.1 (e_value=1e-161) | Symbols: | Integrin-linked protein kinase family | chr3:21728756-21731740 FORWARD LENGTH=471;; (*ITAG) Solyc03g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:619237-627172 transcript_region:SL2.40ch03:619237..627172- go_terms:GO:0004713 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 *-** PTK6_MOUSE); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004713 NbS00002652g0001.1 protein AED:0.21 eAED:0.30 QI:0|0.77|0.8|1|0.77|0.7|10|309|405; (*GB) gi|227937349|gb|ACP43315.1| (e_value=9e-89) 20S proteasome beta subunit 5 [Citrus maxima];; (*SWP) sp|O23717|PSB5A_ARATH (e_value=4e-85) Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1;; (*TAIR) AT1G13060.2 (e_value=3e-86) | Symbols: PBE1 | 20S proteasome beta subunit E1 | chr1:4452641-4454663 FORWARD LENGTH=298;; (*ITAG) Solyc05g056160.2.1 (e_value=2e-98) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00002652g0220.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.6|1|1|5|0|537 NbS00002652g0225.1 protein AED:0.22 eAED:0.22 QI:0|0.43|0.29|0.88|0.5|0.47|17|562|1709 NbS00002652g0222.1 protein AED:0.44 eAED:0.47 QI:0|0|0|1|1|1|2|0|383 NbS00002652g0224.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0.5|0.66|3|0|377 NbS00002652g0228.1 protein AED:0.28 eAED:0.31 QI:382|1|0.5|1|0|0|2|0|63 NbS00002652g0221.1 protein AED:0.27 eAED:0.55 QI:0|0.5|0|0.66|0.5|0.33|3|0|268 NbS00002652g0213.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|144 NbS00015001g0011.1 protein AED:0.16 eAED:0.16 QI:298|1|1|1|1|1|4|284|143; (*GB) gi|255546257|ref|XP_002514188.1| (e_value=1e-98) AP-4 complex subunit sigma-1, putative [Ricinus communis];; (*SWP) sp|O82201|AP4S_ARATH (e_value=4e-98) AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=2 SV=1;; (*TAIR) AT2G19790.1 (e_value=3e-99) | Symbols: | SNARE-like superfamily protein | chr2:8527302-8528395 FORWARD LENGTH=143;; (*ITAG) Solyc05g026130.2.1 (e_value=1e-101) genomic_reference:SL2.40ch05 gene_region:39787480-39792988 transcript_region:SL2.40ch05:39787480..39792988+ go_terms:GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-4 complex subunit sigma-1 (AHRD V1 ***- B4FTQ9_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030117,GO:0015031,GO:0006810 NbS00015001g0001.1 protein AED:0.23 eAED:0.23 QI:424|0.76|0.85|1|0.84|0.71|14|276|485; (*GB) gi|225445037|ref|XP_002283274.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Vitis vinifera];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc07g045160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55581144-55585417 transcript_region:SL2.40ch07:55581144..55585417+ go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00015001g0009.1 protein AED:0.19 eAED:0.19 QI:382|0.87|0.88|1|1|1|9|229|272; (*GB) gi|350538319|ref|NP_001234593.1| (e_value=4e-157) myo-inositol oxygenase [Solanum lycopersicum];; (*SWP) sp|O82200|MIOX2_ARATH (e_value=7e-130) Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2;; (*TAIR) AT2G19800.1 (e_value=6e-131) | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:8531106-8533354 REVERSE LENGTH=317;; (*ITAG) Solyc12g008650.1.1 (e_value=8e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2025279-2028961 transcript_region:SL2.40ch12:2025279..2028961- go_terms:GO:0005737 functional_description:"Inositol oxygenase (AHRD V1 ***- A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0005737 NbS00007367g0002.1 protein AED:0.08 eAED:0.09 QI:85|1|0.88|1|0.37|0.33|9|0|629; (*GB) gi|225452458|ref|XP_002274361.1| (e_value=0.0) PREDICTED: L-aspartate oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q8XWM7|NADB1_RALSO (e_value=3e-142) L-aspartate oxidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=nadB1 PE=3 SV=1;; (*TAIR) AT5G14760.1 (e_value=0.0) | Symbols: AO | L-aspartate oxidase | chr5:4769133-4772012 FORWARD LENGTH=651;; (*ITAG) Solyc12g014530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5498306-5503348 transcript_region:SL2.40ch12:5498306..5503348- go_terms:GO:0005737,GO:0016491,GO:0055114 functional_description:"L-aspartate oxidase (AHRD V1 ***- D7M6M9_ARALY); contains Interpro domain(s) IPR005288 L-aspartate oxidase "; GO:0005737,GO:0016491,GO:0055114 NbS00029522g0004.1 protein AED:0.29 eAED:0.30 QI:0|0.86|0.68|1|0.93|0.87|16|0|1019; (*GB) gi|359474483|ref|XP_002278861.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250662 [Vitis vinifera];; (*SWP) sp|A4IGK4|RBM5_XENTR (e_value=8e-15) RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1;; (*TAIR) AT3G54230.2 (e_value=0.0) | Symbols: SUA | suppressor of abi3-5 | chr3:20073872-20080142 FORWARD LENGTH=1008;; (*ITAG) Solyc08g077310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58375403-58385976 transcript_region:SL2.40ch08:58375403..58385976+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"RNA-binding protein (AHRD V1 *--- C5JJR9_AJEDS); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166,GO:0005622 NbS00012581g0005.1 protein AED:0.00 eAED:0.00 QI:69|1|1|1|1|1|2|51|311; (*GB) gi|5912543|emb|CAB56195.1| (e_value=0.0) Knolle [Capsicum annuum];; (*SWP) sp|Q42374|SY111_ARATH (e_value=6e-143) Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1;; (*TAIR) AT1G08560.1 (e_value=5e-144) | Symbols: SYP111, KN, ATSYP111 | syntaxin of plants 111 | chr1:2709778-2710710 REVERSE LENGTH=310;; (*ITAG) Solyc06g053760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33112734-33114482 transcript_region:SL2.40ch06:33112734..33114482- go_terms:GO:0008565 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0008565 NbS00012581g0107.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|334|561 NbS00012581g0101.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|72 NbS00028568g0003.1 protein AED:0.59 eAED:0.79 QI:0|0|0|0.75|1|1|4|0|75 NbS00005382g0005.1 protein AED:0.15 eAED:0.17 QI:0|0.5|0|1|1|0.66|3|0|270; (*GB) gi|255551301|ref|XP_002516697.1| (e_value=3e-147) ubiquitin, putative [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=4e-58) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT5G24240.1 (e_value=1e-140) | Symbols: | Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein | chr5:8231110-8232925 REVERSE LENGTH=574;; (*ITAG) Solyc03g083350.2.1 (e_value=4e-169) genomic_reference:SL2.40ch03 gene_region:46730445-46732792 transcript_region:SL2.40ch03:46730445..46732792+ go_terms:GO:0043008 functional_description:"Ubiquitin (AHRD V1 **-- Q9FNF8_ARATH); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00019793g0003.1 protein AED:0.08 eAED:0.08 QI:346|0.5|0.33|1|1|1|3|0|372; (*GB) gi|225427093|ref|XP_002276652.1| (e_value=5e-176) PREDICTED: uncharacterized protein LOC100260823 [Vitis vinifera];; (*TAIR) AT1G32160.1 (e_value=1e-150) | Symbols: | Protein of unknown function (DUF760) | chr1:11568701-11570241 FORWARD LENGTH=406;; (*ITAG) Solyc08g076090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57299987-57304114 transcript_region:SL2.40ch08:57299987..57304114- functional_description:"At1g32160/F3C3_6 (AHRD V1 ***- Q9FVR1_ARATH); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00004678g0005.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0|1|0|0.33|3|0|325; (*GB) gi|225446795|ref|XP_002283251.1| (e_value=5e-102) PREDICTED: NAC domain-containing protein 42 [Vitis vinifera];; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=6e-85) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=5e-86) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc07g045030.2.1 (e_value=5e-148) genomic_reference:SL2.40ch07 gene_region:55436220-55441033 transcript_region:SL2.40ch07:55436220..55441033+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbC24341262g0001.1 protein AED:0.00 eAED:0.00 QI:4|-1|1|1|-1|1|1|0|136; (*GB) gi|224125218|ref|XP_002319529.1| (e_value=4e-58) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05430.1 (e_value=5e-57) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:1567745-1571037 FORWARD LENGTH=965;; (*ITAG) Solyc01g099360.2.1 (e_value=3e-85) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00003497g0004.1 protein AED:0.27 eAED:0.27 QI:299|0.88|0.8|1|0.66|0.8|10|0|305; (*GB) gi|83284007|gb|ABC01911.1| (e_value=0.0) succinyl CoA ligase beta subunit-like protein [Solanum tuberosum];; (*SWP) sp|Q84LB6|SUCB_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G20420.1 (e_value=0.0) | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421;; (*ITAG) Solyc06g083790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45398741-45407021 transcript_region:SL2.40ch06:45398741..45407021+ go_terms:GO:0004775 functional_description:"Succinyl-CoA ligase (AHRD V1 **** B4D5D9_9BACT); contains Interpro domain(s) IPR005809 Succinyl-CoA synthetase, beta subunit "; GO:0004775 NbS00039070g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.90|0.75|1|0.90|0.91|12|397|598; (*GB) gi|255578190|ref|XP_002529963.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT2G46700.1 (e_value=0.0) | Symbols: ATCRK3, CRK3 | CDPK-related kinase 3 | chr2:19182968-19186430 REVERSE LENGTH=595;; (*ITAG) Solyc01g096350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79178171-79188731 transcript_region:SL2.40ch01:79178171..79188731- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase-like protein (AHRD V1 **** Q9FIM9_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00033961g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.57|0.85|1|1|7|0|513; (*GB) gi|359473485|ref|XP_003631305.1| (e_value=7e-160) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera];; (*SWP) sp|Q9CAA9|BH049_ARATH (e_value=3e-88) Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=1e-90) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc01g010130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4870120-4873334 transcript_region:SL2.40ch01:4870120..4873334+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00033961g0010.1 protein AED:0.28 eAED:0.29 QI:150|0.65|0.66|1|0.65|0.71|21|0|737; (*GB) gi|260505494|gb|ACX42226.1| (e_value=0.0) heat shock protein 90 [Ipomoea nil];; (*SWP) sp|P24724|HSP90_THEPA (e_value=2e-147) Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2;; (*TAIR) AT2G04030.1 (e_value=0.0) | Symbols: CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 | Chaperone protein htpG family protein | chr2:1281983-1285909 FORWARD LENGTH=780;; (*ITAG) Solyc05g010670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4883167-4891847 transcript_region:SL2.40ch05:4883167..4891847- go_terms:GO:0005524 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_MYXXD); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524 NbS00002621g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.85|0.75|1|0.57|0.5|8|0|684; (*GB) gi|302143807|emb|CBI22668.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W110|FRO4_ARATH (e_value=0.0) Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1;; (*TAIR) AT5G23980.1 (e_value=0.0) | Symbols: ATFRO4, FRO4 | ferric reduction oxidase 4 | chr5:8098167-8101282 REVERSE LENGTH=699;; (*ITAG) Solyc00g026160.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:12327999-12331963 transcript_region:SL2.40ch00:12327999..12331963+ go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **** D6RVS5_HORVU); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0000293 NbS00002621g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.5|0.75|1|1|4|212|246; (*GB) gi|255545204|ref|XP_002513663.1| (e_value=6e-26) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g025160.2.1 (e_value=3e-101) genomic_reference:SL2.40ch03 gene_region:6992082-6993495 transcript_region:SL2.40ch03:6992082..6993495- functional_description:"Unknown Protein (AHRD V1)"; NbS00002621g0101.1 protein AED:0.43 eAED:0.49 QI:0|0.25|0.4|1|1|1|5|363|120 NbS00002621g0212.1 protein AED:0.19 eAED:0.19 QI:122|0.8|1|1|1|1|6|306|255 NbS00002621g0213.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0.38|1|0.66|0.76|13|0|934 NbS00042018g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|759; (*GB) gi|147858797|emb|CAN82910.1| (e_value=0.0) hypothetical protein VITISV_015279 [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=1e-62) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT5G64550.1 (e_value=4e-178) | Symbols: | loricrin-related | chr5:25801794-25803698 REVERSE LENGTH=634;; (*ITAG) Solyc01g104910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84985560-84988138 transcript_region:SL2.40ch01:84985560..84988138- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00050413g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|255583299|ref|XP_002532413.1| (e_value=3e-73) STS14 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q40374|PR1_MEDTR (e_value=1e-68) Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1;; (*TAIR) AT5G57625.1 (e_value=9e-65) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr5:23337865-23338577 FORWARD LENGTH=207;; (*ITAG) Solyc07g006710.1.1 (e_value=4e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1564614-1565162 transcript_region:SL2.40ch07:1564614..1565162- go_terms:GO:0005515 functional_description:"Pathogenesis-related protein PR-1 (AHRD V1 **-- B6UG61_MAIZE); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005515 NbS00054435g0003.1 protein AED:0.24 eAED:0.24 QI:142|0|0|1|1|1|3|0|303; (*GB) gi|255556778|ref|XP_002519422.1| (e_value=7e-70) UDP-glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9ZQ94|U73C5_ARATH (e_value=6e-53) UDP-glycosyltransferase 73C5 OS=Arabidopsis thaliana GN=UGT73C5 PE=2 SV=1;; (*TAIR) AT2G36800.1 (e_value=5e-54) | Symbols: DOGT1, UGT73C5 | don-glucosyltransferase 1 | chr2:15423493-15424980 REVERSE LENGTH=495;; (*ITAG) Solyc10g085860.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64231174-64232658 transcript_region:SL2.40ch10:64231174..64232658- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00035729g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|704; (*GB) gi|350538695|ref|NP_001234611.1| (e_value=0.0) AvrPto-dependent Pto-interacting protein 3 [Solanum lycopersicum];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT2G44830.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:18490398-18492779 FORWARD LENGTH=765;; (*ITAG) Solyc01g090240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75673551-75676761 transcript_region:SL2.40ch01:75673551..75676761+ go_terms:GO:0005515 functional_description:"Protein kinase 5 (AHRD V1 ***- Q8W4K8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00035729g0005.1 protein AED:0.24 eAED:0.26 QI:0|0.6|0.5|0.83|1|1|6|0|887; (*GB) gi|255541042|ref|XP_002511585.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60320.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr3:22292073-22295228 REVERSE LENGTH=796;; (*ITAG) Solyc01g090270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75692316-75698111 transcript_region:SL2.40ch01:75692316..75698111- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00050790g0003.1 protein AED:0.02 eAED:0.02 QI:16|1|1|1|0|0|2|190|189; (*GB) gi|40287496|gb|AAR83862.1| (e_value=3e-81) elicitor-inducible protein EIG-J7 [Capsicum annuum];; (*TAIR) AT4G39730.1 (e_value=6e-66) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc04g054990.2.1 (e_value=3e-91) genomic_reference:SL2.40ch04 gene_region:52670217-52672301 transcript_region:SL2.40ch04:52670217..52672301+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 *--- LOXH1_HUMAN); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00059211g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.8|0.5|1|1|1|6|308|250; (*GB) gi|224121954|ref|XP_002318714.1| (e_value=8e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=3e-157) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G63400.1 (e_value=4e-149) | Symbols: ADK1 | adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246;; (*ITAG) Solyc03g111200.2.1 (e_value=2e-172) genomic_reference:SL2.40ch03 gene_region:55891362-55895244 transcript_region:SL2.40ch03:55891362..55895244- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00033164g0001.1 protein AED:0.28 eAED:0.37 QI:0|0.77|0.6|1|0.77|0.7|10|284|555; (*GB) gi|38490651|gb|AAQ55288.2| (e_value=0.0) phytocalpain [Nicotiana benthamiana];; (*SWP) sp|Q11002|CANA_DROME (e_value=1e-60) Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2;; (*TAIR) AT1G55350.5 (e_value=0.0) | Symbols: DEK1 | calpain-type cysteine protease family | chr1:20654463-20664501 REVERSE LENGTH=2179;; (*ITAG) Solyc12g100360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65458539-65483576 transcript_region:SL2.40ch12:65458539..65483576+ go_terms:GO:0006508,GO:0005622 functional_description:"Calpain-like protein (AHRD V1 ***- Q8RVL2_ARATH); contains Interpro domain(s) IPR001300 Peptidase C2, calpain "; GO:0006508,GO:0005622 NbS00054124g0003.1 protein AED:0.22 eAED:0.22 QI:69|1|0.8|1|1|1|10|0|559; (*GB) gi|225459366|ref|XP_002285809.1| (e_value=0.0) PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera];; (*SWP) sp|Q8KPU2|MNME_SYNE7 (e_value=3e-144) tRNA modification GTPase MnmE OS=Synechococcus elongatus (strain PCC 7942) GN=mnmE PE=3 SV=3;; (*TAIR) AT1G78010.1 (e_value=0.0) | Symbols: | tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560;; (*ITAG) Solyc04g072770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57328213-57335638 transcript_region:SL2.40ch04:57328213..57335638+ go_terms:GO:0005515 functional_description:"tRNA modification GTPase mnmE (AHRD V1 ***- B1WVF4_CYAA5); contains Interpro domain(s) IPR004520 tRNA modification GTPase TrmE "; GO:0005515 NbS00059658g0003.1 protein AED:0.19 eAED:0.21 QI:11|0.87|0.76|1|0.68|0.70|17|0|746; (*GB) gi|298204931|emb|CBI34238.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05B17|WDR48_XENTR (e_value=2e-100) WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1;; (*TAIR) AT3G05090.2 (e_value=0.0) | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753;; (*ITAG) Solyc01g098090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80448180-80461748 transcript_region:SL2.40ch01:80448180..80461748+ go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 ***- B6JWM7_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00012828g0015.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|1|1|3|0|387; (*GB) gi|225458982|ref|XP_002283625.1| (e_value=0.0) PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Vitis vinifera];; (*SWP) sp|Q9SXC4|IRX9H_ARATH (e_value=8e-156) Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=1 SV=2;; (*TAIR) AT1G27600.2 (e_value=6e-157) | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:9604083-9605881 REVERSE LENGTH=394;; (*ITAG) Solyc04g076920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59455110-59461803 transcript_region:SL2.40ch04:59455110..59461803- go_terms:GO:0015018 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-* B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0015018 NbS00012828g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|44917151|dbj|BAD12176.1| (e_value=0.0) 14-3-3 e-1 protein [Nicotiana tabacum];; (*SWP) sp|O49997|1433E_TOBAC (e_value=1e-175) 14-3-3-like protein E OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G38480.1 (e_value=2e-169) | Symbols: GRF3, RCI1 | general regulatory factor 3 | chr5:15410277-15411285 FORWARD LENGTH=255;; (*ITAG) Solyc03g034180.2.1 (e_value=5e-175) genomic_reference:SL2.40ch03 gene_region:10153209-10155317 transcript_region:SL2.40ch03:10153209..10155317- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00012828g0016.1 protein AED:0.20 eAED:0.21 QI:33|0.9|0.71|0.95|0.85|0.90|21|0|1010; (*GB) gi|255537870|ref|XP_002510000.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q92797|SYMPK_HUMAN (e_value=5e-56) Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2;; (*TAIR) AT1G27595.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961;; (*ITAG) Solyc04g076910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00012828g0001.1 protein AED:0.30 eAED:0.30 QI:303|0.8|0.66|0.83|0.6|0.5|6|0|252; (*GB) gi|302142115|emb|CBI19318.3| (e_value=3e-92) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27590.1 (e_value=1e-75) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9592293-9593912 FORWARD LENGTH=264;; (*ITAG) Solyc04g076900.1.1 (e_value=3e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59423288-59429946 transcript_region:SL2.40ch04:59423288..59429946+ go_terms:GO:0005488 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00011780g0001.1 protein AED:0.00 eAED:0.00 QI:139|1|0.5|1|0|0|2|0|172; (*GB) gi|225424154|ref|XP_002284010.1| (e_value=8e-73) PREDICTED: uncharacterized protein LOC100262828 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=2e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc04g007580.1.1 (e_value=2e-88) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:1262092-1262586 transcript_region:SL2.40ch04:1262092..1262586+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 **-- B7FA06_ORYSJ)"; NbS00011780g0011.1 protein AED:0.16 eAED:0.16 QI:293|1|0.88|1|0.87|1|9|377|876; (*GB) gi|46389755|dbj|BAD15108.1| (e_value=0.0) ALG2-interacting protein X [Nicotiana tabacum];; (*SWP) sp|Q8T7K0|ALIX_DICDI (e_value=2e-71) ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1;; (*TAIR) AT1G15130.1 (e_value=0.0) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:5206217-5209848 REVERSE LENGTH=846;; (*ITAG) Solyc04g007560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1242130-1252566 transcript_region:SL2.40ch04:1242130..1252566+ functional_description:"pH-response regulator protein palA/RIM20 (AHRD V1 **-- C8V8Z2_EMENI); contains Interpro domain(s) IPR004328 BRO1 "; NbS00011780g0010.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0|2|0|155; (*GB) gi|224099447|ref|XP_002311487.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C996|GLIP6_ARATH (e_value=7e-34) GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1;; (*TAIR) AT1G71120.1 (e_value=5e-35) | Symbols: GLIP6 | GDSL-motif lipase/hydrolase 6 | chr1:26821072-26822420 REVERSE LENGTH=362;; (*ITAG) Solyc04g007570.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1254411-1257651 transcript_region:SL2.40ch04:1254411..1257651+ go_terms:GO:0016298,GO:0050525 functional_description:"GDSL esterase/lipase 6 (AHRD V1 **** GLIP6_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0050525 NbS00046258g0010.1 protein AED:0.13 eAED:0.14 QI:0|1|0.5|1|1|0.75|4|0|470; (*GB) gi|356566421|ref|XP_003551430.1| (e_value=2e-159) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=3e-158) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=2e-159) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc04g050970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48331995-48334528 transcript_region:SL2.40ch04:48331995..48334528- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 **** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00046258g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.37|0.33|0.88|0.75|0.77|9|0|591; (*GB) gi|255569008|ref|XP_002525474.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LMB9|CRK1_ARATH (e_value=9e-54) Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2;; (*TAIR) AT5G40380.1 (e_value=1e-50) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc04g050940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48148204-48154307 transcript_region:SL2.40ch04:48148204..48154307+ go_terms:GO:0016301,GO:0048602 functional_description:"Receptor protein kinase-like (AHRD V1 *-** B6SP14_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301,GO:0048602 NbS00046258g0005.1 protein AED:0.14 eAED:0.14 QI:6|0.75|0.6|1|1|1|5|0|290; (*GB) gi|255569012|ref|XP_002525476.1| (e_value=9e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G08530.1 (e_value=9e-81) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:2701252-2702952 FORWARD LENGTH=257;; (*ITAG) Solyc04g051120.2.1 (e_value=2e-151) genomic_reference:SL2.40ch04 gene_region:48851159-48862520 transcript_region:SL2.40ch04:48851159..48862520+ functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01BD4_OSTTA)"; NbS00039036g0003.1 protein AED:0.70 eAED:0.70 QI:0|0.4|0.33|0.5|0.8|0.66|6|40|74; (*GB) gi|32470656|gb|AAP45182.1| (e_value=2e-28) Putative kinesin-like protein, identical [Solanum bulbocastanum];; (*ITAG) Solyc08g075930.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:57173960-57176619 transcript_region:SL2.40ch08:57173960..57176619- functional_description:"Kinesin-like (AHRD V1 *-*- Q6Z9U4_ORYSJ)"; NbS00011609g0002.1 protein AED:0.17 eAED:0.17 QI:141|0.8|0.83|1|0.8|0.66|6|282|124; (*GB) gi|351727683|ref|NP_001237937.1| (e_value=7e-74) uncharacterized protein LOC100499661 [Glycine max];; (*SWP) sp|Q9D7M8|RPB4_MOUSE (e_value=6e-22) DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2;; (*TAIR) AT5G09920.1 (e_value=7e-74) | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096276-3097370 FORWARD LENGTH=138;; (*ITAG) Solyc06g073870.2.1 (e_value=7e-79) genomic_reference:SL2.40ch06 gene_region:42002858-42005584 transcript_region:SL2.40ch06:42002858..42005584- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit RPB4 (AHRD V1 **** B9EP00_SALSA); contains Interpro domain(s) IPR006590 RNA polymerase II, Rpb4, core "; GO:0003899 NbS00011609g0001.1 protein AED:0.14 eAED:0.29 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|1345882|sp|P49098.1|CYB5_TOBAC (e_value=2e-28) RecName: Full=Cytochrome b5;; (*SWP) sp|P49098|CYB5_TOBAC (e_value=7e-30) Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=1e-30) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc06g083440.2.1 (e_value=8e-32) genomic_reference:SL2.40ch06 gene_region:45134673-45136744 transcript_region:SL2.40ch06:45134673..45136744+ go_terms:GO:0045153 functional_description:"Cytochrome b5 reductase (AHRD V1 *-** Q54XV1_DICDI); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153 NbS00011609g0017.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.33|0.66|0|0.33|3|0|66; (*GB) gi|222159969|gb|ACM47318.1| (e_value=7e-29) putative zinc ion binding protein [Capsicum annuum];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=2e-27) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=2e-28) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc10g081710.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62050374-62054006 transcript_region:SL2.40ch10:62050374..62054006+ go_terms:GO:0008270 functional_description:"RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011609g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.25|0.4|0.8|1|1|5|0|334; (*GB) gi|222159969|gb|ACM47318.1| (e_value=6e-92) putative zinc ion binding protein [Capsicum annuum];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=9e-59) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=7e-60) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc06g073860.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41998917-42000551 transcript_region:SL2.40ch06:41998917..42000551+ functional_description:"RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI)"; NbS00039573g0004.1 protein AED:0.35 eAED:0.36 QI:160|0.89|0.75|1|0.73|0.8|20|0|446; (*GB) gi|1556429|emb|CAA59008.1| (e_value=0.0) citrate synthase [Nicotiana tabacum];; (*SWP) sp|O80433|CISY_DAUCA (e_value=0.0) Citrate synthase, mitochondrial OS=Daucus carota GN=CS PE=2 SV=1;; (*TAIR) AT2G44350.1 (e_value=0.0) | Symbols: ATCS, CSY4 | Citrate synthase family protein | chr2:18316673-18320524 FORWARD LENGTH=473;; (*ITAG) Solyc01g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70355760-70364545 transcript_region:SL2.40ch01:70355760..70364545+ go_terms:GO:0006099,GO:0044262 functional_description:"Citrate synthase (AHRD V1 ***- O24135_TOBAC); contains Interpro domain(s) IPR010109 Citrate synthase, eukaryotic "; GO:0006099,GO:0044262 NbS00028961g0004.1 protein AED:0.22 eAED:0.25 QI:0|0.11|0.1|0.5|0.33|0.5|10|0|695; (*GB) gi|357445033|ref|XP_003592794.1| (e_value=8e-88) hypothetical protein MTR_1g116130 [Medicago truncatula];; (*TAIR) AT1G60790.1 (e_value=3e-74) | Symbols: TBL2 | Plant protein of unknown function (DUF828) | chr1:22380193-22382216 REVERSE LENGTH=541;; (*ITAG) Solyc05g005100.2.1 (e_value=4e-90) genomic_reference:SL2.40ch05 gene_region:107757-110824 transcript_region:SL2.40ch05:107757..110824- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00016392g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.75|1|0.42|0.62|8|0|369; (*GB) gi|225437332|ref|XP_002264804.1| (e_value=2e-178) PREDICTED: WD repeat-containing protein 89 homolog [Vitis vinifera];; (*SWP) sp|Q54QU5|WDR89_DICDI (e_value=1e-32) WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1;; (*TAIR) AT2G47790.1 (e_value=2e-165) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:19571102-19572946 REVERSE LENGTH=392;; (*ITAG) Solyc09g075000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62283687-62287440 transcript_region:SL2.40ch09:62283687..62287440- functional_description:"WD repeat protein (AHRD V1 **-- B8M2Y5_TALSN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016392g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.92|0.82|1|0.85|0.82|28|769|1269; (*GB) gi|359479902|ref|XP_002267361.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260666 [Vitis vinifera];; (*SWP) sp|P28737|MSP1_YEAST (e_value=4e-66) Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2;; (*TAIR) AT4G02480.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc09g074950.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62243552-62258359 transcript_region:SL2.40ch09:62243552..62258359+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00023323g0005.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.2|1|0|0|5|0|481; (*GB) gi|85068634|gb|ABC69397.1| (e_value=0.0) CYP71D48v1 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26320.1 (e_value=7e-115) | Symbols: CYP71B36 | cytochrome P450, family 71, subfamily B, polypeptide 36 | chr3:9644383-9646064 REVERSE LENGTH=500;; (*ITAG) Solyc06g066240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37945395-37948992 transcript_region:SL2.40ch06:37945395..37948992- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00023323g0006.1 protein AED:0.33 eAED:0.60 QI:0|0|0|1|0|0|3|0|156; (*GB) gi|140083572|gb|ABO84840.1| (e_value=1e-38) putative MAPK2 [Catharanthus roseus];; (*SWP) sp|Q39022|MPK2_ARATH (e_value=1e-39) Mitogen-activated protein kinase 2 OS=Arabidopsis thaliana GN=MPK2 PE=1 SV=2;; (*TAIR) AT1G59580.2 (e_value=1e-40) | Symbols: ATMPK2, MPK2 | mitogen-activated protein kinase homolog 2 | chr1:21884521-21885743 FORWARD LENGTH=376;; (*ITAG) Solyc04g080730.2.1 (e_value=2e-40) genomic_reference:SL2.40ch04 gene_region:62421080-62429518 transcript_region:SL2.40ch04:62421080..62429518+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** D9J1Y9_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00023323g0007.1 protein AED:0.39 eAED:0.55 QI:0|0|0|1|0|0|2|0|60 NbS00015243g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.8|1|0.75|0.6|5|324|399; (*GB) gi|255568816|ref|XP_002525379.1| (e_value=9e-165) alcohol dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9ZUC1|QORL_ARATH (e_value=2e-148) Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2;; (*TAIR) AT1G23740.1 (e_value=1e-149) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE LENGTH=386;; (*ITAG) Solyc05g005480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:352211-355615 transcript_region:SL2.40ch05:352211..355615+ go_terms:GO:0004024 functional_description:"Oxidoreductase zinc-binding dehydrogenase (AHRD V1 **** C2RQQ3_BACCE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00015243g0005.1 protein AED:0.47 eAED:0.47 QI:0|1|0.5|1|0|0|2|0|25 NbS00015243g0003.1 protein AED:0.54 eAED:0.67 QI:0|0|0.33|0.66|1|1|3|0|59 NbS00023541g0004.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.5|0|0.5|2|0|88 NbS00001384g0016.1 protein AED:0.25 eAED:0.26 QI:203|0.90|0.83|1|0.54|0.66|12|0|403; (*GB) gi|5824321|emb|CAB54139.1| (e_value=0.0) ATPase [Solanum tuberosum];; (*SWP) sp|O27555|ARSA_METTH (e_value=2e-51) Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1;; (*TAIR) AT3G10350.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411;; (*ITAG) Solyc04g025160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:18084887-18090843 transcript_region:SL2.40ch04:18084887..18090843- go_terms:GO:0005515,GO:0015105 functional_description:"Arsenite ATPase transporter (Eurofung) (AHRD V1 **** C8VJ74_EMENI); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515,GO:0015105 NbS00001384g0018.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|218; (*GB) gi|225449004|ref|XP_002271854.1| (e_value=4e-60) PREDICTED: uncharacterized protein C24H6.02c [Vitis vinifera];; (*SWP) sp|Q0IH40|DNLZ_XENLA (e_value=2e-18) DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1;; (*TAIR) AT3G54826.1 (e_value=1e-49) | Symbols: | Zim17-type zinc finger protein | chr3:20310354-20311652 FORWARD LENGTH=223;; (*ITAG) Solyc05g053250.2.1 (e_value=1e-94) genomic_reference:SL2.40ch05 gene_region:62536961-62539494 transcript_region:SL2.40ch05:62536961..62539494+ functional_description:"DNL zinc finger family protein (AHRD V1 ***- B6TQA5_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00001384g0014.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.71|0.83|0.71|7|84|811; (*GB) gi|359497527|ref|XP_003635554.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g22760-like [Vitis vinifera];; (*SWP) sp|P0C8Q5|PP336_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1;; (*TAIR) AT4G22760.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11960553-11962289 FORWARD LENGTH=578;; (*ITAG) Solyc10g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1190015-1191748 transcript_region:SL2.40ch10:1190015..1191748+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ME07_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC25250105g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|1|1|-1|1|1|0|194; (*GB) gi|31711507|dbj|BAC77634.1| (e_value=1e-120) 24K germin like protein [Nicotiana tabacum];; (*SWP) sp|O04011|ABP20_PRUPE (e_value=1e-80) Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1;; (*TAIR) AT5G20630.1 (e_value=4e-79) | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211;; (*ITAG) Solyc07g041720.1.1 (e_value=3e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51367296-51367931 transcript_region:SL2.40ch07:51367296..51367931+ go_terms:GO:0050162 functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00015236g0010.1 protein AED:0.00 eAED:0.00 QI:616|1|1|1|1|1|3|440|329; (*GB) gi|255549408|ref|XP_002515757.1| (e_value=8e-129) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G54290.1 (e_value=1e-117) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20104623-20105845 REVERSE LENGTH=350;; (*ITAG) Solyc11g006830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1397978-1400112 transcript_region:SL2.40ch11:1397978..1400112+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012312 Haemerythrin/HHE cation-binding motif "; NbS00015236g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.85|1|8|407|297; (*GB) gi|225464178|ref|XP_002269817.1| (e_value=4e-167) PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SEZ6|RNH2A_ARATH (e_value=2e-150) Ribonuclease H2 subunit A OS=Arabidopsis thaliana GN=At2g25100 PE=2 SV=2;; (*TAIR) AT2G25100.1 (e_value=1e-151) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:10679767-10681654 REVERSE LENGTH=296;; (*ITAG) Solyc11g006860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1409759-1414468 transcript_region:SL2.40ch11:1409759..1414468+ go_terms:GO:0016070,GO:0003676,GO:0004523 functional_description:"Ribonuclease (AHRD V1 ***- B9HKP4_POPTR); contains Interpro domain(s) IPR004649 Ribonuclease H2, subunit A "; GO:0016070,GO:0003676,GO:0004523 NbS00014931g0014.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0.33|1|0|0.33|3|0|237; (*GB) gi|357478601|ref|XP_003609586.1| (e_value=1e-16) hypothetical protein MTR_4g118830 [Medicago truncatula];; (*ITAG) Solyc01g067340.1.1 (e_value=3e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:68200193-68200974 transcript_region:SL2.40ch01:68200193..68200974+ go_terms:GO:0005634,GO:0008152,GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0008152,GO:0045449 NbS00014931g0013.1 protein AED:0.22 eAED:0.22 QI:201|1|1|1|0.81|0.83|12|409|267; (*GB) gi|297807887|ref|XP_002871827.1| (e_value=4e-168) zinc finger family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=4e-68) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT5G18650.1 (e_value=1e-169) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:6218260-6220374 FORWARD LENGTH=267;; (*ITAG) Solyc01g067360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68204221-68208658 transcript_region:SL2.40ch01:68204221..68208658- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q2QP88_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00014931g0016.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|2|0|211; (*GB) gi|16933569|gb|AAL30109.1| (e_value=4e-20) unknown [Solanum phureja x Solanum stenotomum];; (*ITAG) Solyc04g018260.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11187511-11188311 transcript_region:SL2.40ch04:11187511..11188311+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019338g0006.1 protein AED:0.12 eAED:0.12 QI:333|1|0.66|1|0.4|0.5|6|337|121; (*GB) gi|225454698|ref|XP_002271034.1| (e_value=2e-49) PREDICTED: uncharacterized protein LOC100244367 [Vitis vinifera];; (*SWP) sp|P30725|DNAJ_CLOAB (e_value=5e-16) Chaperone protein DnaJ OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaJ PE=2 SV=2;; (*TAIR) AT5G16650.1 (e_value=1e-48) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:5463446-5465075 REVERSE LENGTH=128;; (*ITAG) Solyc03g097240.2.1 (e_value=8e-68) genomic_reference:SL2.40ch03 gene_region:52990326-52993926 transcript_region:SL2.40ch03:52990326..52993926- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6U8P3_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00019338g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|356543241|ref|XP_003540071.1| (e_value=6e-78) PREDICTED: putative gamma-glutamylcyclotransferase At3g02910-like [Glycine max];; (*SWP) sp|Q9M8T3|Y2910_ARATH (e_value=4e-72) Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2;; (*TAIR) AT3G02910.1 (e_value=3e-73) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr3:649986-650549 FORWARD LENGTH=187;; (*ITAG) Solyc03g097230.1.1 (e_value=5e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:52983896-52984480 transcript_region:SL2.40ch03:52983896..52984480+ go_terms:GO:0008307,GO:0003839 functional_description:"Protein containing AIG2-like domain (AHRD V1 *-*- D9PJU0_9ZZZZ); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like "; GO:0008307,GO:0003839 NbS00027951g0002.1 protein AED:0.51 eAED:0.64 QI:0|0|0|1|0|0|3|0|75 NbS00002927g0005.1 protein AED:0.18 eAED:0.18 QI:200|1|1|1|0.85|0.75|8|161|686; (*GB) gi|23499320|gb|AAN37389.1|AF435026_1 (e_value=1e-154) class III chitinase [Capsicum annuum];; (*SWP) sp|P51614|CHIT3_VITVI (e_value=4e-131) Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1;; (*TAIR) AT5G24090.1 (e_value=9e-131) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc12g006840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1254397-1257951 transcript_region:SL2.40ch12:1254397..1257951+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00002927g0101.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|181 NbS00033654g0004.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|0.75|1|5|311|221; (*GB) gi|217072068|gb|ACJ84394.1| (e_value=3e-129) unknown [Medicago truncatula];; (*SWP) sp|O23429|VA724_ARATH (e_value=7e-126) Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2;; (*TAIR) AT4G15780.1 (e_value=3e-126) | Symbols: ATVAMP724, VAMP724 | vesicle-associated membrane protein 724 | chr4:8980081-8981697 REVERSE LENGTH=222;; (*ITAG) Solyc01g066940.2.1 (e_value=1e-134) genomic_reference:SL2.40ch01 gene_region:67600856-67606237 transcript_region:SL2.40ch01:67600856..67606237+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00024371g0006.1 protein AED:0.00 eAED:0.00 QI:102|1|1|1|1|1|4|366|80; (*GB) gi|242050850|ref|XP_002463169.1| (e_value=4e-48) hypothetical protein SORBIDRAFT_02g039000 [Sorghum bicolor];; (*SWP) sp|O82221|RUXG_ARATH (e_value=4e-47) Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1;; (*TAIR) AT2G23930.1 (e_value=3e-48) | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182353-10183026 FORWARD LENGTH=80;; (*ITAG) Solyc11g006820.1.1 (e_value=4e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1390382-1392866 transcript_region:SL2.40ch11:1390382..1392866- functional_description:"Small nuclear ribonucleoprotein G (AHRD V1 ***- B6SK31_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00024371g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|118; (*ITAG) Solyc11g006790.1.1 (e_value=2e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1374366-1374593 transcript_region:SL2.40ch11:1374366..1374593- functional_description:"Unknown Protein (AHRD V1)"; NbS00019447g0007.1 protein AED:0.20 eAED:0.20 QI:172|1|1|1|0.42|0.37|8|352|290; (*GB) gi|224125328|ref|XP_002329778.1| (e_value=4e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|D3DFG8|PSPA_HYDTT (e_value=5e-18) Phosphoserine phosphatase 1 OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=pspA PE=1 SV=1;; (*TAIR) AT5G22620.3 (e_value=9e-55) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=460;; (*ITAG) Solyc02g078240.2.1 (e_value=2e-172) genomic_reference:SL2.40ch02 gene_region:37571669-37574482 transcript_region:SL2.40ch02:37571669..37574482+ functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 ***- GPMA_CYTH3); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; NbS00019447g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|162; (*GB) gi|255553757|ref|XP_002517919.1| (e_value=2e-45) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B9RW00|CSPL6_RICCO (e_value=5e-47) CASP-like protein RCOM_1174750 OS=Ricinus communis GN=RCOM_1174750 PE=2 SV=1;; (*TAIR) AT4G03540.1 (e_value=3e-41) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:1570042-1571483 FORWARD LENGTH=164;; (*ITAG) Solyc02g078250.2.1 (e_value=8e-75) genomic_reference:SL2.40ch02 gene_region:37574876-37576211 transcript_region:SL2.40ch02:37574876..37576211- functional_description:"UPF0497 membrane protein 9 (AHRD V1 ***- U4979_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00001206g0021.1 protein AED:0.11 eAED:0.11 QI:0|0.91|0.69|1|0.83|0.76|13|0|648; (*GB) gi|45935140|gb|AAS79598.1| (e_value=0.0) hypothetical protein [Ipomoea trifida];; (*SWP) sp|Q96JG6|CC132_HUMAN (e_value=1e-31) Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3;; (*TAIR) AT2G27900.2 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00001206g0016.1 protein AED:0.42 eAED:0.42 QI:0|1|0.6|1|0.75|1|5|0|163; (*GB) gi|356539321|ref|XP_003538147.1| (e_value=9e-42) PREDICTED: coiled-coil domain-containing protein 132-like [Glycine max];; (*TAIR) AT2G27900.2 (e_value=9e-35) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00001206g0023.1 protein AED:0.10 eAED:0.10 QI:167|0.94|0.94|1|1|1|19|290|944; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=0.0) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=0.0) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=0.0) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc11g066560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49403647-49415796 transcript_region:SL2.40ch11:49403647..49415796+ go_terms:GO:0016192,GO:0008270,GO:0005488 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 "; GO:0016192,GO:0008270,GO:0005488 NbS00001206g0022.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|0|501; (*GB) gi|1345642|sp|P48418.1|C75A1_PETHY (e_value=0.0) RecName: Full=Flavonoid 3',5'-hydroxylase 1; Short=F3'5'H; AltName: Full=CYPLXXVA1; AltName: Full=Cytochrome P450 75A1;; (*SWP) sp|P48418|C75A1_PETHY (e_value=0.0) Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1;; (*TAIR) AT5G07990.1 (e_value=3e-161) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc11g066580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49421353-49424483 transcript_region:SL2.40ch11:49421353..49424483+ go_terms:GO:0008392 functional_description:"Cytochrome P450"; GO:0008392 NbS00035012g0004.1 protein AED:0.30 eAED:0.31 QI:0|0.84|0.71|0.85|0.84|0.92|14|0|399; (*GB) gi|225436757|ref|XP_002269884.1| (e_value=0.0) PREDICTED: peptide chain release factor 1 [Vitis vinifera];; (*SWP) sp|Q8DMG9|RF1_THEEB (e_value=1e-157) Peptide chain release factor 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=prfA PE=3 SV=1;; (*TAIR) AT3G62910.1 (e_value=0.0) | Symbols: APG3 | Peptide chain release factor 1 | chr3:23257661-23260386 REVERSE LENGTH=422;; (*ITAG) Solyc09g074650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61964316-61970935 transcript_region:SL2.40ch09:61964316..61970935+ go_terms:GO:0005515,GO:0003747 functional_description:"Peptide chain release factor 1 (AHRD V1 **** A0YJR4_LYNSP); contains Interpro domain(s) IPR004373 Peptide chain release factor 1 "; GO:0005515,GO:0003747 NbS00019262g0004.1 protein AED:0.41 eAED:0.42 QI:30|0.8|0.33|0.83|0.4|0.5|6|0|149; (*GB) gi|255564796|ref|XP_002523392.1| (e_value=2e-67) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G26410.1 (e_value=2e-64) | Symbols: | Uncharacterised conserved protein UCP022280 | chr4:13346760-13348791 FORWARD LENGTH=263;; (*ITAG) Solyc01g049960.2.1 (e_value=7e-58) genomic_reference:SL2.40ch01 gene_region:42725926-42727636 transcript_region:SL2.40ch01:42725926..42727636- functional_description:"Unknown Protein (AHRD V1)"; NbS00035043g0005.1 protein AED:0.07 eAED:0.10 QI:0|0|0|1|0|0.25|4|0|471; (*GB) gi|124484371|dbj|BAF46296.1| (e_value=8e-172) cytochrome P450 [Ipomoea nil];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=1e-93) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT4G39490.1 (e_value=1e-125) | Symbols: CYP96A10 | cytochrome P450, family 96, subfamily A, polypeptide 10 | chr4:18365229-18366788 FORWARD LENGTH=519;; (*ITAG) Solyc10g080840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61347776-61349305 transcript_region:SL2.40ch10:61347776..61349305- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00023053g0003.1 protein AED:0.18 eAED:0.19 QI:0|1|0.66|1|1|0.66|3|139|226; (*GB) gi|225446851|ref|XP_002283721.1| (e_value=3e-60) PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=2e-25) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT2G30933.1 (e_value=2e-51) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr2:13164179-13166517 REVERSE LENGTH=227;; (*ITAG) Solyc07g056310.2.1 (e_value=4e-94) genomic_reference:SL2.40ch07 gene_region:61480093-61482416 transcript_region:SL2.40ch07:61480093..61482416+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00000261g0005.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|2|577|129; (*GB) gi|76573351|gb|ABA46780.1| (e_value=3e-72) unknown [Solanum tuberosum];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=5e-64) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=4e-65) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc04g015370.2.1 (e_value=2e-77) genomic_reference:SL2.40ch04 gene_region:5576931-5582053 transcript_region:SL2.40ch04:5576931..5582053- go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00000261g0008.1 protein AED:0.28 eAED:0.28 QI:58|0.83|0.84|1|1|1|13|580|373; (*GB) gi|255638717|gb|ACU19663.1| (e_value=0.0) unknown [Glycine max];; (*SWP) sp|O04153|CALR3_ARATH (e_value=0.0) Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2;; (*TAIR) AT1G08450.1 (e_value=0.0) | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424;; (*ITAG) Solyc05g056230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64732387-64738654 transcript_region:SL2.40ch05:64732387..64738654- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00010513g0010.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|3|0|159; (*GB) gi|147854311|emb|CAN79113.1| (e_value=6e-36) hypothetical protein VITISV_007009 [Vitis vinifera];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=1e-23) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=1e-24) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071710.2.1 (e_value=5e-64) genomic_reference:SL2.40ch02 gene_region:35660897-35664118 transcript_region:SL2.40ch02:35660897..35664118+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00006913g0014.1 protein AED:0.29 eAED:0.30 QI:0|0.77|0.6|1|0.33|0.6|10|594|821; (*GB) gi|359489837|ref|XP_003633983.1| (e_value=3e-143) PREDICTED: uncharacterized protein LOC100255153 [Vitis vinifera];; (*SWP) sp|Q9BWS9|CHID1_HUMAN (e_value=5e-47) Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1;; (*TAIR) AT4G01040.1 (e_value=1e-138) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:453383-455407 FORWARD LENGTH=430;; (*ITAG) Solyc05g050320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59590670-59596104 transcript_region:SL2.40ch05:59590670..59596104+ go_terms:GO:0006032,GO:0005975 functional_description:"Chitinase domain-containing protein 1 (AHRD V1 **-- B0XIZ5_CULQU); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0006032,GO:0005975 NbS00006913g0015.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.33|0.88|0.25|0.44|9|194|595; (*GB) gi|242093148|ref|XP_002437064.1| (e_value=2e-151) hypothetical protein SORBIDRAFT_10g020550 [Sorghum bicolor];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=1e-105) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=1e-106) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc05g050350.1.1 (e_value=4e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:59608116-59612050 transcript_region:SL2.40ch05:59608116..59612050- go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00006913g0017.1 protein AED:0.39 eAED:0.60 QI:0|0|0|1|0|0|2|0|92 NbS00006913g0012.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|90; (*ITAG) Solyc05g050340.2.1 (e_value=5e-27) genomic_reference:SL2.40ch05 gene_region:59599095-59601281 transcript_region:SL2.40ch05:59599095..59601281+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 6 (AHRD V1 *-*- C9DHZ5_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00004066g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|1|1|5|0|331; (*GB) gi|224141589|ref|XP_002324150.1| (e_value=1e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6Z8B9|P2C12_ORYSJ (e_value=2e-97) Probable protein phosphatase 2C 12 OS=Oryza sativa subsp. japonica GN=Os02g0224100 PE=2 SV=1;; (*TAIR) AT4G32950.1 (e_value=8e-99) | Symbols: | Protein phosphatase 2C family protein | chr4:15904444-15906010 REVERSE LENGTH=326;; (*ITAG) Solyc08g065500.1.1 (e_value=6e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:50841687-50843264 transcript_region:SL2.40ch08:50841687..50843264+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 *-** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00004066g0009.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|189; (*GB) gi|225429448|ref|XP_002277081.1| (e_value=2e-97) PREDICTED: uncharacterized protein LOC100260976 [Vitis vinifera];; (*TAIR) AT4G32960.1 (e_value=1e-79) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:15908785-15910141 REVERSE LENGTH=264;; (*ITAG) Solyc12g095920.1.1 (e_value=1e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63360272-63364478 transcript_region:SL2.40ch12:63360272..63364478- functional_description:"BRCA1-A complex subunit MERIT40 (AHRD V1 ***- MRI40_XENTR)"; NbS00004066g0003.1 protein AED:0.40 eAED:0.43 QI:0|0.75|0.4|1|1|1|5|0|270; (*GB) gi|296081610|emb|CBI20615.3| (e_value=4e-58) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G20430.1 (e_value=1e-38) | Symbols: | CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:7121480-7123074 FORWARD LENGTH=265;; (*ITAG) Solyc04g080350.2.1 (e_value=2e-100) genomic_reference:SL2.40ch04 gene_region:62155165-62158474 transcript_region:SL2.40ch04:62155165..62158474+ functional_description:"Genomic DNA chromosome 3 P1 clone MQC12 (AHRD V1 ***- Q9LTP9_ARATH); contains Interpro domain(s) IPR019385 Phosphorylated adapter RNA export protein, RNA-binding domain "; NbS00006486g0004.1 protein AED:0.10 eAED:0.10 QI:524|1|1|1|0.87|0.77|9|469|697; (*GB) gi|225459280|ref|XP_002285784.1| (e_value=0.0) PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera];; (*SWP) sp|Q9C9Q8|PMTT_ARATH (e_value=0.0) Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2;; (*TAIR) AT1G78240.2 (e_value=0.0) | Symbols: TSD2, QUA2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29433173-29435815 REVERSE LENGTH=684;; (*ITAG) Solyc04g074290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57869993-57876242 transcript_region:SL2.40ch04:57869993..57876242- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00013814g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.84|0.85|1|0.69|0.78|14|351|514; (*GB) gi|225464788|ref|XP_002266883.1| (e_value=0.0) PREDICTED: cytochrome P450 97B2, chloroplastic [Vitis vinifera];; (*SWP) sp|O48921|C97B2_SOYBN (e_value=0.0) Cytochrome P450 97B2, chloroplastic OS=Glycine max GN=CYP97B2 PE=2 SV=1;; (*TAIR) AT4G15110.1 (e_value=0.0) | Symbols: CYP97B3 | cytochrome P450, family 97, subfamily B, polypeptide 3 | chr4:8629922-8632993 REVERSE LENGTH=580;; (*ITAG) Solyc05g016330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15575138-15583910 transcript_region:SL2.40ch05:15575138..15583910+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00019276g0005.1 protein AED:0.26 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|158; (*GB) gi|224125410|ref|XP_002319579.1| (e_value=9e-100) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08845.2 (e_value=3e-96) | Symbols: | Ribosomal L18p/L5e family protein | chr1:2838789-2840955 FORWARD LENGTH=234;; (*ITAG) Solyc01g111810.2.1 (e_value=1e-106) genomic_reference:SL2.40ch01 gene_region:89737898-89739683 transcript_region:SL2.40ch01:89737898..89739683+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7KIV9_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00023982g0010.1 protein AED:0.03 eAED:0.03 QI:62|1|1|1|0.5|0.66|3|147|106; (*GB) gi|388500732|gb|AFK38432.1| (e_value=2e-51) unknown [Lotus japonicus];; (*TAIR) AT4G18590.1 (e_value=2e-47) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:10236524-10236940 FORWARD LENGTH=106;; (*ITAG) Solyc09g009900.2.1 (e_value=1e-64) genomic_reference:SL2.40ch09 gene_region:3382755-3386531 transcript_region:SL2.40ch09:3382755..3386531- go_terms:GO:0005515 functional_description:"Pollen-specific protein - like (AHRD V1 ***- O49527_ARATH); contains Interpro domain(s) IPR013970 Replication factor A protein 3 "; GO:0005515 NbS00023982g0011.1 protein AED:0.22 eAED:0.22 QI:0|1|0.87|1|1|1|8|386|549; (*GB) gi|225464938|ref|XP_002275366.1| (e_value=0.0) PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis vinifera];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=2e-39) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT3G52660.2 (e_value=2e-159) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471;; (*ITAG) Solyc09g009890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3372431-3376679 transcript_region:SL2.40ch09:3372431..3376679- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- B8N3I8_ASPFN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00023982g0006.1 protein AED:0.10 eAED:0.30 QI:0|0|0|0.75|1|1|4|0|343; (*GB) gi|359806246|ref|NP_001241212.1| (e_value=4e-139) uncharacterized protein LOC100809651 [Glycine max];; (*SWP) sp|Q9FVS1|FBK23_ARATH (e_value=2e-70) F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1;; (*TAIR) AT1G57790.1 (e_value=1e-71) | Symbols: | F-box family protein | chr1:21404578-21405636 REVERSE LENGTH=352;; (*ITAG) Solyc09g009870.2.1 (e_value=1e-123) genomic_reference:SL2.40ch09 gene_region:3356180-3359366 transcript_region:SL2.40ch09:3356180..3359366+ functional_description:"F-box protein family-like (AHRD V1 ***- Q6ZLE2_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023982g0005.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|64 NbS00005915g0006.1 protein AED:0.29 eAED:0.29 QI:352|0.93|1|1|0.81|0.70|17|509|520; (*GB) gi|296088117|emb|CBI35506.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=7e-54) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G38470.1 (e_value=1e-143) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc04g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55618968-55632414 transcript_region:SL2.40ch04:55618968..55632414- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00016445g0007.1 protein AED:0.00 eAED:0.00 QI:4|1|1|1|1|1|2|94|510; (*GB) gi|225435530|ref|XP_002283018.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 92A1 [Vitis vinifera];; (*SWP) sp|Q9LXV0|U92A1_ARATH (e_value=7e-146) UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana GN=UGT92A1 PE=2 SV=1;; (*TAIR) AT5G12890.1 (e_value=5e-147) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4069658-4071124 REVERSE LENGTH=488;; (*ITAG) Solyc11g061980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45792676-45794377 transcript_region:SL2.40ch11:45792676..45794377- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00016445g0012.1 protein AED:0.10 eAED:0.13 QI:0|0|0.33|1|0|0.33|3|0|364; (*GB) gi|386870479|gb|AFJ42570.1| (e_value=0.0) beta-actin [Sesamum indicum];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00016445g0011.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|78; (*GB) gi|26050216|gb|AAN77987.1| (e_value=4e-29) actin 8 [Arabidopsis thaliana];; (*SWP) sp|O81221|ACT_GOSHI (e_value=8e-28) Actin OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=6e-29) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc04g071260.2.1 (e_value=4e-29) genomic_reference:SL2.40ch04 gene_region:55789259-55790792 transcript_region:SL2.40ch04:55789259..55790792- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q5XPX5_SACOF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00016445g0105.1 protein AED:0.00 eAED:0.00 QI:116|1|1|1|1|1|5|220|822 NbS00016445g0108.1 protein AED:0.40 eAED:0.69 QI:107|0.75|0.4|1|0.5|0.4|5|0|256 NbS00032031g0015.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.84|1|0.77|0.78|19|368|663; (*GB) gi|225424719|ref|XP_002265302.1| (e_value=0.0) PREDICTED: threonyl-tRNA synthetase, mitochondrial [Vitis vinifera];; (*SWP) sp|O04630|SYTM_ARATH (e_value=0.0) Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3;; (*TAIR) AT5G26830.1 (e_value=0.0) | Symbols: | Threonyl-tRNA synthetase | chr5:9437351-9441568 FORWARD LENGTH=709;; (*ITAG) Solyc08g074550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55812388-55826514 transcript_region:SL2.40ch08:55812388..55826514+ go_terms:GO:0006412,GO:0005737,GO:0000166 functional_description:"Threonyl-tRNA synthetase (AHRD V1 ***- Q17LW8_AEDAE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0006412,GO:0005737,GO:0000166 NbS00032031g0014.1 protein AED:0.30 eAED:0.30 QI:0|0.6|0.83|0.83|0.4|0.5|6|198|354; (*GB) gi|224108141|ref|XP_002314734.1| (e_value=2e-117) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60060.1 (e_value=1e-97) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr1:22139282-22141585 FORWARD LENGTH=386;; (*ITAG) Solyc05g005810.2.1 (e_value=7e-144) genomic_reference:SL2.40ch05 gene_region:626359-628719 transcript_region:SL2.40ch05:626359..628719- functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *-*- Y1615_ARATH)"; NbS00032031g0008.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.25|1|1|4|0|176; (*GB) gi|255560019|ref|XP_002521028.1| (e_value=7e-26) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=1e-18) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=7e-20) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc05g005790.2.1 (e_value=2e-55) genomic_reference:SL2.40ch05 gene_region:611266-613735 transcript_region:SL2.40ch05:611266..613735- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033245g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|1|1|1|5|0|352; (*GB) gi|380005178|gb|AFD28990.1| (e_value=0.0) dihydroflavonol 4-reductase, partial [Nicotiana attenuata];; (*SWP) sp|P14720|DFRA_PETHY (e_value=0.0) Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2;; (*TAIR) AT5G42800.1 (e_value=2e-117) | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reductase | chr5:17164296-17165864 REVERSE LENGTH=382;; (*ITAG) Solyc02g085020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42630321-42632725 transcript_region:SL2.40ch02:42630321..42632725+ go_terms:GO:0033729 functional_description:"Dihydroflavonol 4-reductase (AHRD V1 **** Q6WG03_SOLTU); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00033245g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|255561084|ref|XP_002521554.1| (e_value=2e-21) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g085010.1.1 (e_value=2e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00033245g0018.1 protein AED:0.12 eAED:0.15 QI:0|0.6|0.54|0.90|0.9|0.81|11|113|1545; (*GB) gi|356559382|ref|XP_003547978.1| (e_value=2e-99) PREDICTED: uncharacterized protein LOC100776448 [Glycine max];; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=1e-55) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT4G36520.1 (e_value=8e-77) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17230589-17235435 REVERSE LENGTH=1422;; (*ITAG) Solyc02g085030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42632474-42639818 transcript_region:SL2.40ch02:42632474..42639818- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B8NTJ3_ASPFN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00033245g0002.1 protein AED:0.33 eAED:0.33 QI:48|1|1|1|0.75|0.8|5|249|271; (*GB) gi|225458237|ref|XP_002282021.1| (e_value=3e-170) PREDICTED: uncharacterized protein DDB_G0288155 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FWR5|GCA1_ARATH (e_value=3e-164) Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1;; (*TAIR) AT1G19580.1 (e_value=3e-165) | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1 | chr1:6774937-6777092 FORWARD LENGTH=275;; (*ITAG) Solyc02g085040.2.1 (e_value=2e-178) genomic_reference:SL2.40ch02 gene_region:42643295-42648586 transcript_region:SL2.40ch02:42643295..42648586- go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_CLOBH); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00010432g0003.1 protein AED:0.49 eAED:0.49 QI:27|0.25|0.2|0.4|1|1|5|376|137; (*GB) gi|356576923|ref|XP_003556579.1| (e_value=2e-75) PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Glycine max];; (*SWP) sp|Q5UP57|P4H_MIMIV (e_value=2e-15) Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1;; (*TAIR) AT2G43080.1 (e_value=7e-74) | Symbols: AT-P4H-1 | P4H isoform 1 | chr2:17915755-17918599 FORWARD LENGTH=283;; (*ITAG) Solyc11g005200.1.1 (e_value=6e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:167628-178529 transcript_region:SL2.40ch11:167628..178529- go_terms:GO:0016491,GO:0055114 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TD48_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00021725g0002.1 protein AED:0.17 eAED:0.17 QI:22|0.5|0|0.66|1|0.66|3|0|109; (*GB) gi|255548029|ref|XP_002515071.1| (e_value=2e-28) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=9e-28) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=1e-27) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=5e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00031434g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|255683546|gb|ACU27362.1| (e_value=2e-48) superman [Nicotiana tabacum];; (*SWP) sp|Q38895|SUP_ARATH (e_value=3e-22) Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1;; (*TAIR) AT3G23130.1 (e_value=2e-23) | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fingers superfamily protein | chr3:8242504-8243118 FORWARD LENGTH=204;; (*ITAG) Solyc09g089590.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64669031-64669624 transcript_region:SL2.40ch09:64669031..64669624+ go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00036210g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0.8|1|1|1|5|0|595; (*GB) gi|225439099|ref|XP_002266161.1| (e_value=0.0) PREDICTED: putative zinc transporter At3g08650 [Vitis vinifera];; (*SWP) sp|Q9C9Z1|ZTP50_ARATH (e_value=0.0) Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650 PE=2 SV=2;; (*TAIR) AT3G08650.1 (e_value=0.0) | Symbols: | ZIP metal ion transporter family | chr3:2624694-2626879 REVERSE LENGTH=595;; (*ITAG) Solyc01g087530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74229849-74238478 transcript_region:SL2.40ch01:74229849..74238478+ go_terms:GO:0016020 functional_description:"Zinc transporter (AHRD V1 *-*- D5H5M3_SALRM); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00035367g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|1|1|3|0|211; (*GB) gi|28916459|gb|AAO59435.1| (e_value=4e-116) putative developmental protein [Nicotiana benthamiana];; (*SWP) sp|O96552|CHMP1_DICDI (e_value=9e-51) Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1;; (*TAIR) AT1G17730.1 (e_value=8e-117) | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting 46.1 | chr1:6099210-6100153 FORWARD LENGTH=203;; (*ITAG) Solyc06g062510.2.1 (e_value=1e-127) genomic_reference:SL2.40ch06 gene_region:35823172-35824382 transcript_region:SL2.40ch06:35823172..35824382+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 1b (AHRD V1 ***- B6T9W6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00028988g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.25|0.2|0.8|1|1|5|0|315; (*GB) gi|359479449|ref|XP_002273889.2| (e_value=6e-126) PREDICTED: LOW QUALITY PROTEIN: high affinity nitrate transporter 2.4-like [Vitis vinifera];; (*SWP) sp|Q9LXH0|NRT26_ARATH (e_value=2e-90) High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1;; (*TAIR) AT3G45060.1 (e_value=1e-91) | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate transporter 2.6 | chr3:16477671-16479386 REVERSE LENGTH=542;; (*ITAG) Solyc11g069750.1.1 (e_value=2e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00028988g0006.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|15230589|ref|NP_190092.1| (e_value=3e-33) high affinity nitrate transporter 2.6 [Arabidopsis thaliana];; (*SWP) sp|Q9LXH0|NRT26_ARATH (e_value=1e-34) High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1;; (*TAIR) AT3G45060.1 (e_value=7e-36) | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate transporter 2.6 | chr3:16477671-16479386 REVERSE LENGTH=542;; (*ITAG) Solyc11g069750.1.1 (e_value=3e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00017758g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|0|0.16|6|1308|304; (*GB) gi|359492781|ref|XP_002278504.2| (e_value=1e-155) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FIF7|PP435_ARATH (e_value=1e-81) Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1;; (*TAIR) AT5G59200.1 (e_value=9e-83) | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=544;; (*ITAG) Solyc04g064650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54935603-54937453 transcript_region:SL2.40ch04:54935603..54937453- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00017758g0015.1 protein AED:0.27 eAED:0.29 QI:15|1|0.85|1|0.5|0.57|7|0|331; (*GB) gi|255570432|ref|XP_002526175.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q3E7Q9|GLYT6_ARATH (e_value=4e-13) Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2;; (*TAIR) AT1G21480.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:7519116-7521426 REVERSE LENGTH=462;; (*ITAG) Solyc04g064680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54942400-54948658 transcript_region:SL2.40ch04:54942400..54948658- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7KK15_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00017758g0016.1 protein AED:0.38 eAED:0.39 QI:0|1|0.75|1|1|1|4|0|250; (*GB) gi|225457797|ref|XP_002265695.1| (e_value=2e-109) PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera];; (*SWP) sp|O49292|PPD4_ARATH (e_value=2e-94) PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2;; (*TAIR) AT1G77090.1 (e_value=1e-95) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:28960576-28961875 REVERSE LENGTH=260;; (*ITAG) Solyc04g064670.2.1 (e_value=8e-144) genomic_reference:SL2.40ch04 gene_region:54939986-54941975 transcript_region:SL2.40ch04:54939986..54941975- go_terms:GO:0019898 functional_description:"Thylakoid lumenal 19 kDa protein, chloroplastic (AHRD V1 *-*- TL19_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00017758g0005.1 protein AED:0.23 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|359492783|ref|XP_002278486.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Vitis vinifera];; (*SWP) sp|Q9LVF9|PP245_ARATH (e_value=2e-133) Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1;; (*TAIR) AT3G21470.1 (e_value=1e-134) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:7563503-7565074 FORWARD LENGTH=523;; (*ITAG) Solyc04g064660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54938323-54939909 transcript_region:SL2.40ch04:54938323..54939909+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LHR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00017758g0004.1 protein AED:0.37 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|359492783|ref|XP_002278486.2| (e_value=8e-68) PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Vitis vinifera];; (*SWP) sp|Q9LVF9|PP245_ARATH (e_value=3e-50) Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1;; (*TAIR) AT3G21470.1 (e_value=2e-51) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:7563503-7565074 FORWARD LENGTH=523;; (*ITAG) Solyc04g064660.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54938323-54939909 transcript_region:SL2.40ch04:54938323..54939909+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LHR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00017758g0018.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|187; (*GB) gi|357487459|ref|XP_003614017.1| (e_value=8e-19) Pentatricopeptide repeat protein [Medicago truncatula];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=4e-17) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=3e-18) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc04g064650.1.1 (e_value=8e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54935603-54937453 transcript_region:SL2.40ch04:54935603..54937453- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00050457g0003.1 protein AED:0.01 eAED:0.01 QI:147|1|1|1|1|1|2|442|460; (*GB) gi|359473345|ref|XP_002269461.2| (e_value=6e-148) PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera];; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=2e-84) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=1e-85) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc05g007880.2.1 (e_value=4e-158) genomic_reference:SL2.40ch05 gene_region:2319572-2322236 transcript_region:SL2.40ch05:2319572..2322236- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00010539g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|350535509|ref|NP_001233942.1| (e_value=1e-146) ureF protein [Solanum lycopersicum];; (*SWP) sp|B7K911|UREF_CYAP7 (e_value=3e-13) Urease accessory protein UreF OS=Cyanothece sp. (strain PCC 7424) GN=ureF PE=3 SV=1;; (*TAIR) AT1G21840.1 (e_value=3e-112) | Symbols: UREF | urease accessory protein F | chr1:7666859-7667581 FORWARD LENGTH=240;; (*ITAG) Solyc03g031430.1.1 (e_value=2e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:8265682-8266410 transcript_region:SL2.40ch03:8265682..8266410+ go_terms:GO:0006807 functional_description:"Urease accessory protein UreF (AHRD V1 ***- Q8H1P4_SOYBN); contains Interpro domain(s) IPR002639 Urease accessory protein UreF "; GO:0006807 NbS00010539g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|350539964|ref|NP_001233826.1| (e_value=4e-144) TCP transcription factor 21 [Solanum lycopersicum];; (*SWP) sp|Q9LT89|TCP19_ARATH (e_value=6e-65) Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1;; (*TAIR) AT5G51910.2 (e_value=5e-66) | Symbols: | TCP family transcription factor | chr5:21094704-21095585 REVERSE LENGTH=293;; (*ITAG) Solyc03g006800.1.1 (e_value=8e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1316456-1317436 transcript_region:SL2.40ch03:1316456..1317436+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00031238g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.5|1|1|2|0|250; (*GB) gi|224072979|ref|XP_002303945.1| (e_value=7e-115) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06990.1 (e_value=2e-104) | Symbols: | Protein of unknown function, DUF617 | chr5:2169699-2170484 FORWARD LENGTH=261;; (*ITAG) Solyc07g065420.1.1 (e_value=4e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64410110-64410823 transcript_region:SL2.40ch07:64410110..64410823- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00031238g0002.1 protein AED:0.02 eAED:0.02 QI:126|1|1|1|1|1|4|338|321; (*GB) gi|359485749|ref|XP_002264419.2| (e_value=7e-153) PREDICTED: protein trpH-like [Vitis vinifera];; (*SWP) sp|P44176|TRPH_HAEIN (e_value=1e-12) Protein trpH OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trpH PE=3 SV=1;; (*TAIR) AT2G13840.1 (e_value=3e-139) | Symbols: | Polymerase/histidinol phosphatase-like | chr2:5788616-5791057 REVERSE LENGTH=434;; (*ITAG) Solyc11g044800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36091790-36097197 transcript_region:SL2.40ch11:36091790..36097197+ go_terms:GO:0008081 functional_description:"PHP domain-containing protein (AHRD V1 ***- D7L064_ARALY); contains Interpro domain(s) IPR003141 Polymerase and histidinol phosphatase, N-terminal "; GO:0008081 NbS00002871g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.62|1|1|1|8|253|487; (*GB) gi|225433786|ref|XP_002268984.1| (e_value=1e-119) PREDICTED: uncharacterized protein LOC100244691 [Vitis vinifera];; (*TAIR) AT2G43210.2 (e_value=5e-89) | Symbols: | Ubiquitin-like superfamily protein | chr2:17960942-17963560 FORWARD LENGTH=531;; (*ITAG) Solyc09g098550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67616259-67625847 transcript_region:SL2.40ch09:67616259..67625847+ functional_description:"UBX domain-containing protein (AHRD V1 *-*- D7LJY9_ARALY); contains Interpro domain(s) IPR001012 UBX "; NbS00049652g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|224109182|ref|XP_002315113.1| (e_value=3e-99) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16250.1 (e_value=1e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183;; (*ITAG) Solyc11g008690.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2874856-2875551 transcript_region:SL2.40ch11:2874856..2875551- functional_description:"TO23-3 (Fragment) (AHRD V1 *-*- Q3LVQ6_TAROF)"; NbS00018736g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|224; (*GB) gi|379056268|dbj|BAL68174.1| (e_value=1e-120) ethylene response factor #230 [Nicotiana tabacum];; (*SWP) sp|Q40477|ERF4_TOBAC (e_value=4e-31) Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1;; (*TAIR) AT5G44210.1 (e_value=6e-32) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc10g009110.1.1 (e_value=2e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018736g0011.1 protein AED:0.16 eAED:0.32 QI:0|0.5|0|1|0|0|3|0|172; (*GB) gi|119675117|gb|ABL89185.1| (e_value=1e-56) squamosa promoter binding protein-like protein [Capsicum annuum];; (*SWP) sp|Q38741|SBP1_ANTMA (e_value=1e-40) Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1;; (*TAIR) AT1G53160.1 (e_value=3e-33) | Symbols: SPL4 | squamosa promoter binding protein-like 4 | chr1:19806478-19807080 FORWARD LENGTH=174;; (*ITAG) Solyc02g077920.2.1 (e_value=9e-58) genomic_reference:SL2.40ch02 gene_region:37320931-37323107 transcript_region:SL2.40ch02:37320931..37323107- go_terms:GO:0003700 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q0PY35_SOLLC); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00018736g0012.1 protein AED:0.21 eAED:0.21 QI:194|0.92|0.93|1|0.71|0.73|15|425|745; (*GB) gi|111183165|gb|ABH07902.1| (e_value=0.0) putative protease/hydrolase [Solanum lycopersicum];; (*SWP) sp|Q8VZD4|DEG15_ARATH (e_value=0.0) Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2;; (*TAIR) AT1G28320.1 (e_value=0.0) | Symbols: DEG15 | protease-related | chr1:9920673-9924347 REVERSE LENGTH=709;; (*ITAG) Solyc02g077900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37307822-37315353 transcript_region:SL2.40ch02:37307822..37315353+ go_terms:GO:0004175 functional_description:"Peroxisomal leader peptide-processing protease (AHRD V1 *--- TYSD1_HUMAN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004175 NbS00018736g0101.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|240 NbS00018736g0104.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|67 NbS00022727g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|0.75|0|0.25|4|0|404; (*GB) gi|224127878|ref|XP_002320186.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01080.1 (e_value=5e-160) | Symbols: TBL26 | TRICHOME BIREFRINGENCE-LIKE 26 | chr4:466626-468275 REVERSE LENGTH=442;; (*ITAG) Solyc10g009590.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3707515-3710640 transcript_region:SL2.40ch10:3707515..3710640- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00022727g0006.1 protein AED:0.78 eAED:0.78 QI:0|0|0.5|0.5|0|0.5|2|50|71 NbS00027107g0012.1 protein AED:0.19 eAED:0.19 QI:386|0.66|0.7|1|0.55|0.6|10|44|310; (*GB) gi|350538319|ref|NP_001234593.1| (e_value=6e-149) myo-inositol oxygenase [Solanum lycopersicum];; (*SWP) sp|O82200|MIOX2_ARATH (e_value=3e-126) Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2;; (*TAIR) AT2G19800.1 (e_value=2e-127) | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:8531106-8533354 REVERSE LENGTH=317;; (*ITAG) Solyc12g008650.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2025279-2028961 transcript_region:SL2.40ch12:2025279..2028961- go_terms:GO:0005737 functional_description:"Inositol oxygenase (AHRD V1 ***- A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0005737 NbS00027107g0007.1 protein AED:0.17 eAED:0.17 QI:285|1|1|1|1|1|4|286|143; (*GB) gi|255546257|ref|XP_002514188.1| (e_value=1e-98) AP-4 complex subunit sigma-1, putative [Ricinus communis];; (*SWP) sp|O82201|AP4S_ARATH (e_value=4e-98) AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=2 SV=1;; (*TAIR) AT2G19790.1 (e_value=3e-99) | Symbols: | SNARE-like superfamily protein | chr2:8527302-8528395 FORWARD LENGTH=143;; (*ITAG) Solyc05g026130.2.1 (e_value=1e-101) genomic_reference:SL2.40ch05 gene_region:39787480-39792988 transcript_region:SL2.40ch05:39787480..39792988+ go_terms:GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-4 complex subunit sigma-1 (AHRD V1 ***- B4FTQ9_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030117,GO:0015031,GO:0006810 NbS00027107g0008.1 protein AED:0.18 eAED:0.18 QI:372|0.91|0.92|1|0.66|0.76|13|275|521; (*GB) gi|225445037|ref|XP_002283274.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Vitis vinifera];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc07g045160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55581144-55585417 transcript_region:SL2.40ch07:55581144..55585417+ go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00052098g0010.1 protein AED:0.11 eAED:0.11 QI:785|0.5|0.66|1|0|0.33|3|0|766; (*GB) gi|359477281|ref|XP_003631958.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Vitis vinifera];; (*SWP) sp|Q9M907|PP217_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1;; (*TAIR) AT3G06920.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2181717-2184449 FORWARD LENGTH=871;; (*ITAG) Solyc01g080720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72469460-72474630 transcript_region:SL2.40ch01:72469460..72474630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00037734g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.77|0.7|0.8|1|1|10|0|364; (*GB) gi|296086719|emb|CBI32354.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZVS8|Y1327_ARATH (e_value=5e-158) Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2;; (*TAIR) AT1G03270.1 (e_value=4e-159) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:799191-802436 FORWARD LENGTH=499;; (*ITAG) Solyc09g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57951952-57962484 transcript_region:SL2.40ch09:57951952..57962484- functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00031998g0006.1 protein AED:0.39 eAED:0.39 QI:0|1|1|1|1|1|2|0|171; (*GB) gi|225452011|ref|XP_002283616.1| (e_value=1e-66) PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|P82412|RRP3_SPIOL (e_value=8e-61) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1;; (*TAIR) AT5G15760.1 (e_value=2e-54) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr5:5143100-5143905 FORWARD LENGTH=183;; (*ITAG) Solyc03g034190.2.1 (e_value=1e-98) genomic_reference:SL2.40ch03 gene_region:10158743-10161172 transcript_region:SL2.40ch03:10158743..10161172+ go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00037263g0005.1 protein AED:0.00 eAED:0.00 QI:85|1|1|1|1|1|4|252|251; (*GB) gi|297736909|emb|CBI26110.3| (e_value=3e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G15563.1 (e_value=7e-44) | Symbols: | unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8891771-8892348 FORWARD LENGTH=167;; (*ITAG) Solyc01g067280.2.1 (e_value=2e-145) genomic_reference:SL2.40ch01 gene_region:68082848-68085391 transcript_region:SL2.40ch01:68082848..68085391- functional_description:"F-box domain containing protein (AHRD V1 ***- B6T548_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037263g0008.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|0.66|3|0|622; (*GB) gi|359476128|ref|XP_002282629.2| (e_value=0.0) PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=6e-110) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=5e-111) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc08g060950.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:43269829-43271385 transcript_region:SL2.40ch08:43269829..43271385- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM22_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016506g0001.1 protein AED:0.13 eAED:0.13 QI:70|0.95|1|1|0.86|0.87|24|448|1428; (*GB) gi|225443998|ref|XP_002281070.1| (e_value=0.0) PREDICTED: ABC transporter C family member 2-like [Vitis vinifera];; (*SWP) sp|Q42093|AB2C_ARATH (e_value=0.0) ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2;; (*TAIR) AT2G34660.2 (e_value=0.0) | Symbols: MRP2, ABCC2, AtABCC2 | multidrug resistance-associated protein 2 | chr2:14603267-14612387 FORWARD LENGTH=1623;; (*ITAG) Solyc08g006880.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1422494-1449145 transcript_region:SL2.40ch08:1422494..1449145- go_terms:GO:0008559 functional_description:"ABC transporter C family member 2 (AHRD V1 **-- AB2C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0008559 NbS00055319g0004.1 protein AED:0.10 eAED:0.10 QI:960|0.75|0.77|1|0.87|0.77|9|232|707; (*GB) gi|225446376|ref|XP_002274225.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=2e-169) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc07g053910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59638570-59645162 transcript_region:SL2.40ch07:59638570..59645162- go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003103g0003.1 protein AED:0.20 eAED:0.20 QI:178|1|1|1|0.75|0.8|5|442|243; (*GB) gi|255580242|ref|XP_002530951.1| (e_value=1e-79) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9CAZ0|SKI24_ARATH (e_value=5e-75) F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2;; (*TAIR) AT1G08710.1 (e_value=1e-76) | Symbols: | F-box family protein | chr1:2771720-2773250 FORWARD LENGTH=274;; (*ITAG) Solyc10g085660.1.1 (e_value=3e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64092581-64093954 transcript_region:SL2.40ch10:64092581..64093954- functional_description:"F-box protein SKIP24 (AHRD V1 ***- SKI24_ARATH)"; NbS00010416g0001.1 protein AED:0.23 eAED:0.23 QI:129|0.8|0.90|1|1|1|11|322|381; (*GB) gi|7579025|gb|AAF64227.1|AF248647_1 (e_value=0.0) glucose acyltransferase [Solanum pennellii];; (*SWP) sp|Q9C7Z9|SCP18_ARATH (e_value=5e-93) Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2;; (*TAIR) AT5G09640.1 (e_value=2e-89) | Symbols: SNG2, SCPL19 | serine carboxypeptidase-like 19 | chr5:2988373-2990966 FORWARD LENGTH=465;; (*ITAG) Solyc10g049210.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:40070217-40074680 transcript_region:SL2.40ch10:40070217..40074680+ go_terms:GO:0016754 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TG69_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0016754 NbS00002934g0006.1 protein AED:0.16 eAED:0.16 QI:265|0.66|0.85|1|0.83|0.71|7|274|245; (*GB) gi|297829330|ref|XP_002882547.1| (e_value=2e-115) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9D0M0|EXOS7_MOUSE (e_value=1e-33) Exosome complex exonuclease RRP42 OS=Mus musculus GN=Exosc7 PE=2 SV=1;; (*TAIR) AT3G07750.2 (e_value=2e-115) | Symbols: | 3'-5'-exoribonuclease family protein | chr3:2473486-2475218 FORWARD LENGTH=286;; (*ITAG) Solyc08g007520.2.1 (e_value=1e-129) genomic_reference:SL2.40ch08 gene_region:2066461-2069311 transcript_region:SL2.40ch08:2066461..2069311- go_terms:GO:0042802,GO:0000175 functional_description:"Exosome complex exonuclease RRP42 (AHRD V1 ***- B6T4R9_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0042802,GO:0000175 NbS00002934g0009.1 protein AED:0.32 eAED:0.36 QI:23|0.5|0.57|1|0|0.28|7|320|212; (*ITAG) Solyc08g007490.2.1 (e_value=8e-95) genomic_reference:SL2.40ch08 gene_region:2048561-2054722 transcript_region:SL2.40ch08:2048561..2054722- functional_description:"Peptidyl-tRNA hydrolase ICT1, mitochondrial (AHRD V1 *-*- ICT1_SALSA)"; NbS00002934g0007.1 protein AED:0.25 eAED:0.26 QI:0|0|0.5|1|0|0|2|236|201; (*GB) gi|255537091|ref|XP_002509612.1| (e_value=5e-76) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45360.1 (e_value=3e-62) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc08g079480.2.1 (e_value=4e-95) genomic_reference:SL2.40ch08 gene_region:60164440-60165467 transcript_region:SL2.40ch08:60164440..60165467+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00002934g0013.1 protein AED:0.24 eAED:0.27 QI:0|0|0.33|1|0|0|3|0|91; (*GB) gi|225470289|ref|XP_002266561.1| (e_value=4e-47) PREDICTED: protein cornichon homolog 4 [Vitis vinifera];; (*SWP) sp|Q84W04|CNIH4_ARATH (e_value=3e-47) Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1;; (*TAIR) AT1G12390.1 (e_value=2e-48) | Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137;; (*ITAG) Solyc08g007510.2.1 (e_value=6e-53) genomic_reference:SL2.40ch08 gene_region:2061088-2066053 transcript_region:SL2.40ch08:2061088..2066053+ go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00002934g0014.1 protein AED:0.19 eAED:1.00 QI:47|0|0|1|0|0|2|115|41 NbS00010196g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|356|211; (*GB) gi|388499710|gb|AFK37921.1| (e_value=4e-58) unknown [Medicago truncatula];; (*TAIR) AT1G31130.1 (e_value=4e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:11114963-11115928 REVERSE LENGTH=321;; (*ITAG) Solyc04g064530.1.1 (e_value=4e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54804949-54805971 transcript_region:SL2.40ch04:54804949..54805971- functional_description:"Unknown Protein (AHRD V1)"; NbS00040816g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|297739445|emb|CBI29627.3| (e_value=2e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|P19244|HSP41_PEA (e_value=3e-42) 22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1;; (*TAIR) AT4G10250.1 (e_value=5e-43) | Symbols: ATHSP22.0 | HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195;; (*ITAG) Solyc01g102960.2.1 (e_value=2e-82) genomic_reference:SL2.40ch01 gene_region:83371681-83372560 transcript_region:SL2.40ch01:83371681..83372560+ functional_description:"class IV heat shock protein (AHRD V1 ***- B6T3F5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00040816g0010.1 protein AED:0.22 eAED:0.22 QI:148|0.83|0.76|1|0.91|0.92|25|284|1324; (*GB) gi|225465288|ref|XP_002270977.1| (e_value=0.0) PREDICTED: methionine S-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9SWR3|MMT1_WOLBI (e_value=0.0) Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1 SV=1;; (*TAIR) AT5G49810.1 (e_value=0.0) | Symbols: MMT | methionine S-methyltransferase | chr5:20239418-20246046 FORWARD LENGTH=1071;; (*ITAG) Solyc01g102940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83352910-83360308 transcript_region:SL2.40ch01:83352910..83360308+ go_terms:GO:0008757 functional_description:"Methionine s-methyltransferase (AHRD V1 **** B9N0J3_POPTR); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0008757 NbS00040816g0011.1 protein AED:0.38 eAED:0.38 QI:0|0.2|0|0.33|1|0.83|6|0|165; (*GB) gi|1449179|dbj|BAA13101.1| (e_value=3e-94) N-ethylmaleimide sensitive fusion protein [Nicotiana tabacum];; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=6e-89) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=5e-90) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=3e-96) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbC25844668g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|114 NbS00033331g0008.1 protein AED:0.30 eAED:0.30 QI:475|0.77|0.8|1|0.77|0.7|10|324|419; (*GB) gi|327198779|emb|CBL43264.1| (e_value=0.0) glyceraldehyde-3-phosphate dehydrogenase [Solanum tuberosum];; (*SWP) sp|P12859|G3PB_PEA (e_value=0.0) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2;; (*TAIR) AT1G42970.1 (e_value=0.0) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc12g094640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63152981-63156043 transcript_region:SL2.40ch12:63152981..63156043+ go_terms:GO:0008152,GO:0055114 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 ***- B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00033331g0009.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.75|1|0.66|0.5|4|316|191; (*ITAG) Solyc12g094630.1.1 (e_value=4e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63147638-63151573 transcript_region:SL2.40ch12:63147638..63151573+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055103g0006.1 protein AED:0.06 eAED:0.06 QI:287|1|0.75|1|0.66|1|4|242|261; (*GB) gi|225446215|ref|XP_002264040.1| (e_value=1e-44) PREDICTED: uncharacterized protein LOC100267845 [Vitis vinifera];; (*ITAG) Solyc07g007610.2.1 (e_value=5e-119) genomic_reference:SL2.40ch07 gene_region:2267268-2271182 transcript_region:SL2.40ch07:2267268..2271182+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 *--- B9DHX0_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00034612g0003.1 protein AED:0.15 eAED:0.19 QI:107|0.33|0.25|1|0|0.25|4|0|199; (*GB) gi|359473960|ref|XP_002263491.2| (e_value=4e-65) PREDICTED: uncharacterized protein LOC100249640 [Vitis vinifera];; (*TAIR) AT5G53500.1 (e_value=6e-42) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:21726167-21728524 REVERSE LENGTH=654;; (*ITAG) Solyc08g082900.2.1 (e_value=3e-106) genomic_reference:SL2.40ch08 gene_region:62717433-62721756 transcript_region:SL2.40ch08:62717433..62721756- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00055813g0011.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.75|0.87|0.71|0.5|8|0|387; (*GB) gi|255575293|ref|XP_002528550.1| (e_value=0.0) protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=9e-78) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT3G58640.2 (e_value=0.0) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc07g055130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60575268-60584663 transcript_region:SL2.40ch07:60575268..60584663- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00055813g0012.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|3|0|754; (*GB) gi|329739343|gb|AEB97384.1| (e_value=0.0) MAX2A [Petunia x hybrida];; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=0.0) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2;; (*TAIR) AT2G42620.1 (e_value=0.0) | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693;; (*ITAG) Solyc07g055120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60572778-60575140 transcript_region:SL2.40ch07:60572778..60575140+ go_terms:GO:0004842 functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0004842 NbS00012076g0001.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|1|1|3|0|330; (*GB) gi|297735649|emb|CBI18143.3| (e_value=4e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-17) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT4G13810.2 (e_value=6e-26) | Symbols: RLP47 | receptor like protein 47 | chr4:8005062-8007464 REVERSE LENGTH=706;; (*ITAG) Solyc01g098690.2.1 (e_value=6e-74) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00012076g0004.1 protein AED:0.47 eAED:0.76 QI:0|0|0|1|0|0.25|4|0|82 NbS00006263g0011.1 protein AED:0.10 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|90; (*GB) gi|18423932|ref|NP_568847.1| (e_value=2e-36) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G57060.1 (e_value=5e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23090666-23091796 FORWARD LENGTH=137;; (*ITAG) Solyc06g062830.2.1 (e_value=3e-41) genomic_reference:SL2.40ch06 gene_region:36031628-36033778 transcript_region:SL2.40ch06:36031628..36033778+ functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 ***- Q9LTR7_ARATH)"; NbS00006263g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0.5|0|3|0|565; (*GB) gi|20140867|sp|Q9MT28.1|THRC_SOLTU (e_value=0.0) RecName: Full=Threonine synthase, chloroplastic; Short=TS; Flags: Precursor;; (*SWP) sp|Q9MT28|THRC_SOLTU (e_value=0.0) Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G29840.1 (e_value=0.0) | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr4:14599434-14601014 REVERSE LENGTH=526;; (*ITAG) Solyc06g062840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36034006-36037124 transcript_region:SL2.40ch06:36034006..36037124- go_terms:GO:0004795 functional_description:"Threonine synthase (AHRD V1 **** Q2Q021_SOYBN); contains Interpro domain(s) IPR004450 Threonine synthase "; GO:0004795 NbS00006263g0008.1 protein AED:0.14 eAED:0.20 QI:0|0|0|1|1|1|5|0|459; (*GB) gi|125583945|gb|EAZ24876.1| (e_value=2e-79) hypothetical protein OsJ_08656 [Oryza sativa Japonica Group];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=9e-48) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G12000.1 (e_value=3e-65) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:3874151-3876780 REVERSE LENGTH=701;; (*ITAG) Solyc06g062820.2.1 (e_value=2e-91) genomic_reference:SL2.40ch06 gene_region:36020779-36025846 transcript_region:SL2.40ch06:36020779..36025846- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase (AHRD V1 *-** Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00006263g0015.1 protein AED:0.29 eAED:0.29 QI:205|1|1|1|0.6|0.66|6|215|257; (*GB) gi|359484453|ref|XP_003633111.1| (e_value=5e-121) PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera];; (*SWP) sp|Q9M2B4|ALFL3_ARATH (e_value=2e-112) PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1;; (*TAIR) AT3G42790.1 (e_value=2e-113) | Symbols: AL3 | alfin-like 3 | chr3:14878128-14879618 REVERSE LENGTH=250;; (*ITAG) Solyc06g062850.2.1 (e_value=5e-127) genomic_reference:SL2.40ch06 gene_region:36037831-36043258 transcript_region:SL2.40ch06:36037831..36043258- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00041494g0012.1 protein AED:0.23 eAED:0.27 QI:0|0.2|0|0.83|0.4|0.33|6|0|448; (*GB) gi|297738689|emb|CBI27934.3| (e_value=2e-114) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G56780.1 (e_value=9e-87) | Symbols: ATET2, ET2 | effector of transcription2 | chr5:22964384-22966241 REVERSE LENGTH=483;; (*ITAG) Solyc07g021550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:19453609-19456445 transcript_region:SL2.40ch07:19453609..19456445+ functional_description:"Transcripteion factor (Fragment) (AHRD V1 ***- O04239_VICFA)"; NbS00041494g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|225444971|ref|XP_002279824.1| (e_value=3e-14) PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Vitis vinifera];; (*ITAG) Solyc07g021620.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:20368252-20369652 transcript_region:SL2.40ch07:20368252..20369652+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00041494g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|225444971|ref|XP_002279824.1| (e_value=7e-77) PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Vitis vinifera];; (*SWP) sp|P0C7R1|PPR74_ARATH (e_value=4e-57) Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1;; (*TAIR) AT1G47580.1 (e_value=3e-58) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:17485668-17486387 FORWARD LENGTH=239;; (*ITAG) Solyc07g021620.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:20368252-20369652 transcript_region:SL2.40ch07:20368252..20369652+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00041494g0009.1 protein AED:0.23 eAED:0.23 QI:263|1|0.85|1|1|1|7|0|345; (*GB) gi|359484504|ref|XP_002279837.2| (e_value=0.0) PREDICTED: graves disease carrier protein-like [Vitis vinifera];; (*SWP) sp|Q01888|GDC_BOVIN (e_value=4e-65) Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1;; (*TAIR) AT4G26180.1 (e_value=1e-166) | Symbols: | Mitochondrial substrate carrier family protein | chr4:13260263-13261887 REVERSE LENGTH=325;; (*ITAG) Solyc12g008770.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2123672-2126297 transcript_region:SL2.40ch12:2123672..2126297+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00060080g0006.1 protein AED:0.12 eAED:0.12 QI:28|1|0.5|1|1|1|2|594|28 NbS00060080g0007.1 protein AED:0.24 eAED:0.24 QI:98|1|1|1|1|1|3|11|159; (*GB) gi|225460857|ref|XP_002277568.1| (e_value=7e-30) PREDICTED: uncharacterized protein LOC100257277 [Vitis vinifera];; (*TAIR) AT4G22320.1 (e_value=2e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc12g014480.1.1 (e_value=2e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5450727-5455449 transcript_region:SL2.40ch12:5450727..5455449- functional_description:"cDNA clone 002-156-B04 full insert sequence (AHRD V1 *-*- B7F1Y4_ORYSJ)"; NbS00002163g0001.1 protein AED:0.13 eAED:0.15 QI:0|0.66|0.75|1|0.66|0.75|4|604|213; (*GB) gi|224102323|ref|XP_002312638.1| (e_value=4e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67590.2 (e_value=2e-30) | Symbols: | Remorin family protein | chr1:25333255-25334472 REVERSE LENGTH=308;; (*ITAG) Solyc05g014710.2.1 (e_value=3e-85) genomic_reference:SL2.40ch05 gene_region:8844932-8846789 transcript_region:SL2.40ch05:8844932..8846789+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KET1_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00002163g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|1|1|6|207|745; (*GB) gi|359473713|ref|XP_002266306.2| (e_value=0.0) PREDICTED: cyclin-dependent kinase G-2-like [Vitis vinifera];; (*SWP) sp|Q7XUF4|CDKG2_ORYSJ (e_value=0.0) Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2;; (*TAIR) AT1G67580.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:25327727-25330965 REVERSE LENGTH=752;; (*ITAG) Solyc05g014760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8917405-8920972 transcript_region:SL2.40ch05:8917405..8920972+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013080g0004.1 protein AED:0.24 eAED:0.24 QI:275|1|1|1|0.88|0.8|10|421|259; (*GB) gi|6094336|sp|O48660.1|SPDE_NICSY (e_value=0.0) RecName: Full=Spermidine synthase; AltName: Full=Putrescine aminopropyltransferase; Short=Aminopropyltransferase;; (*SWP) sp|O48660|SPDE_NICSY (e_value=0.0) Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G23820.1 (e_value=5e-159) | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378;; (*ITAG) Solyc05g005710.2.1 (e_value=1e-173) genomic_reference:SL2.40ch05 gene_region:526630-530399 transcript_region:SL2.40ch05:526630..530399+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** Q93X16_SOLTU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00013080g0109.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.25|0.66|0.75|4|0|91 NbS00031804g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|255538038|ref|XP_002510084.1| (e_value=3e-59) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27461.1 (e_value=6e-52) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9537948-9539012 REVERSE LENGTH=354;; (*ITAG) Solyc04g077740.1.1 (e_value=2e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60251147-60252229 transcript_region:SL2.40ch04:60251147..60252229+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033361g0006.1 protein AED:0.25 eAED:0.26 QI:0|1|0.33|1|0.5|0.66|3|308|501; (*GB) gi|255570777|ref|XP_002526341.1| (e_value=1e-165) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=1e-13) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT5G60250.1 (e_value=4e-108) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655;; (*ITAG) Solyc06g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3688-7998 transcript_region:SL2.40ch06:3688..7998+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00010816g0006.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|433; (*ITAG) Solyc10g008920.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:2937341-2938642 transcript_region:SL2.40ch10:2937341..2938642+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00010816g0017.1 protein AED:0.21 eAED:0.22 QI:0|0.6|0.62|0.93|0.8|0.68|16|0|1025; (*GB) gi|255536707|ref|XP_002509420.1| (e_value=0.0) interferon-induced guanylate-binding protein, putative [Ricinus communis];; (*SWP) sp|Q61107|GBP4_MOUSE (e_value=1e-39) Guanylate-binding protein 4 OS=Mus musculus GN=Gbp4 PE=1 SV=1;; (*TAIR) AT5G46070.1 (e_value=0.0) | Symbols: | Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082;; (*ITAG) Solyc10g008950.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2980571-2990499 transcript_region:SL2.40ch10:2980571..2990499+ go_terms:GO:0005525 functional_description:"Guanylate-binding protein 10 (AHRD V1 *-*- Q29RG2_MOUSE); contains Interpro domain(s) IPR015894 Guanylate-binding protein, N-terminal "; GO:0005525 NbS00010816g0005.1 protein AED:0.28 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|300681467|emb|CBH32561.1| (e_value=2e-48) histone H3, expressed [Triticum aestivum];; (*SWP) sp|P68428|H32_WHEAT (e_value=8e-50) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=8e-51) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=6e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00010816g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69 NbS00010816g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|179; (*GB) gi|356548662|ref|XP_003542719.1| (e_value=4e-38) PREDICTED: serine/threonine-protein kinase-like protein ACR4-like [Glycine max];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=5e-12) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G46080.1 (e_value=3e-33) | Symbols: | Protein kinase superfamily protein | chr5:18689723-18690721 REVERSE LENGTH=332;; (*ITAG) Solyc10g008960.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2992540-2993586 transcript_region:SL2.40ch10:2992540..2993586- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00010816g0018.1 protein AED:0.13 eAED:0.25 QI:0|0|0|1|0|0|4|0|246; (*GB) gi|350534744|ref|NP_001234413.1| (e_value=6e-122) Aqp2 protein [Solanum lycopersicum];; (*SWP) sp|Q06611|PIP12_ARATH (e_value=1e-111) Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1;; (*TAIR) AT2G45960.1 (e_value=1e-112) | Symbols: PIP1B, TMP-A, ATHH2, PIP1;2 | plasma membrane intrinsic protein 1B | chr2:18910450-18911703 FORWARD LENGTH=286;; (*ITAG) Solyc01g094690.2.1 (e_value=2e-125) genomic_reference:SL2.40ch01 gene_region:77897514-77900268 transcript_region:SL2.40ch01:77897514..77900268+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- Q40266_MESCR); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00037514g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.85|1|1|1|7|0|1256; (*GB) gi|356545153|ref|XP_003541009.1| (e_value=0.0) PREDICTED: putative multidrug resistance protein-like [Glycine max];; (*SWP) sp|Q9LSJ5|AB18B_ARATH (e_value=0.0) ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1;; (*TAIR) AT3G28390.1 (e_value=0.0) | Symbols: PGP18 | P-glycoprotein 18 | chr3:10629425-10633967 REVERSE LENGTH=1225;; (*ITAG) Solyc07g064120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63619807-63625362 transcript_region:SL2.40ch07:63619807..63625362+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00019001g0005.1 protein AED:0.35 eAED:0.35 QI:199|0.81|0.83|1|0.54|0.58|12|0|433; (*GB) gi|224713823|gb|ACN62126.1| (e_value=0.0) tryptophan decarboxylase [Capsicum annuum];; (*SWP) sp|Q8RY79|TYDC1_ARATH (e_value=0.0) Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1;; (*TAIR) AT2G20340.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490;; (*ITAG) Solyc09g064430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57250250-57257828 transcript_region:SL2.40ch09:57250250..57257828+ go_terms:GO:0004058,GO:0004398 functional_description:"Aromatic L-amino acid decarboxylase (AHRD V1 **** A6BM84_ROSDA); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase "; GO:0004058,GO:0004398 NbS00040696g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.75|0.75|0.66|0.5|4|205|76; (*GB) gi|359372829|gb|AEV42262.1| (e_value=2e-21) hypothetical protein [Beta vulgaris];; (*TAIR) AT5G25570.2 (e_value=2e-23) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:8901832-8902891 FORWARD LENGTH=99;; (*ITAG) Solyc08g067980.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54257816-54260443 transcript_region:SL2.40ch08:54257816..54260443+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023694g0008.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|180; (*GB) gi|113205400|gb|AAU90303.2| (e_value=5e-25) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc08g016290.1.1 (e_value=6e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00023694g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|255578331|ref|XP_002530032.1| (e_value=1e-28) hypothetical protein RCOM_0793640 [Ricinus communis];; (*ITAG) Solyc05g013540.1.1 (e_value=4e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:6814092-6815252 transcript_region:SL2.40ch05:6814092..6815252+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor ERF086 (AHRD V1 *-*- D7LXW6_ARALY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00025595g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.83|0.71|1|0.66|0.71|7|167|530; (*GB) gi|297802738|ref|XP_002869253.1| (e_value=3e-120) hypothetical protein ARALYDRAFT_353556 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O65530|PEK14_ARATH (e_value=2e-119) Proline-rich receptor-like protein kinase PERK14 OS=Arabidopsis thaliana GN=PERK14 PE=2 SV=1;; (*TAIR) AT4G32710.1 (e_value=5e-125) | Symbols: | Protein kinase superfamily protein | chr4:15781362-15783242 FORWARD LENGTH=388;; (*ITAG) Solyc08g068250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54557887-54563179 transcript_region:SL2.40ch08:54557887..54563179- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00025595g0017.1 protein AED:0.27 eAED:0.28 QI:0|0.33|0|1|1|1|4|0|650; (*GB) gi|225430029|ref|XP_002281569.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like [Vitis vinifera];; (*SWP) sp|Q8GZ63|PP397_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2;; (*TAIR) AT5G25630.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8947426-8949424 FORWARD LENGTH=574;; (*ITAG) Solyc08g068230.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54541283-54546516 transcript_region:SL2.40ch08:54541283..54546516- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4J8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025595g0014.1 protein AED:0.12 eAED:0.12 QI:0|1|0.84|1|1|0.92|13|0|736; (*GB) gi|356502567|ref|XP_003520090.1| (e_value=0.0) PREDICTED: phosphate transporter PHO1 homolog 10-like [Glycine max];; (*SWP) sp|Q6R8G0|PHO1A_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 10 OS=Arabidopsis thaliana GN=PHO1-H10 PE=2 SV=1;; (*TAIR) AT1G69480.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr1:26114187-26117479 REVERSE LENGTH=777;; (*ITAG) Solyc08g068240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54553451-54557598 transcript_region:SL2.40ch08:54553451..54557598+ go_terms:GO:0016021 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0016021 NbS00025595g0001.1 protein AED:0.22 eAED:0.34 QI:0|0|0.5|1|1|1|2|85|129; (*GB) gi|359475326|ref|XP_003631656.1| (e_value=3e-48) PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera];; (*SWP) sp|Q87SU3|RL27_VIBPA (e_value=2e-17) 50S ribosomal protein L27 OS=Vibrio parahaemolyticus GN=rpmA PE=3 SV=1;; (*TAIR) AT5G15220.1 (e_value=2e-40) | Symbols: | Ribosomal protein L27 family protein | chr5:4941466-4942133 REVERSE LENGTH=154;; (*ITAG) Solyc08g068220.2.1 (e_value=1e-61) genomic_reference:SL2.40ch08 gene_region:54539601-54540524 transcript_region:SL2.40ch08:54539601..54540524+ go_terms:GO:0005515 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- B6T4C5_MAIZE); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005515 NbS00010724g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|356529991|ref|XP_003533569.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100804626 [Glycine max];; (*ITAG) Solyc01g089890.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:75364730-75365497 transcript_region:SL2.40ch01:75364730..75365497- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00010724g0016.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|0.66|0.5|4|0|239; (*GB) gi|225453346|ref|XP_002270527.1| (e_value=7e-74) PREDICTED: probable WRKY transcription factor 12 [Vitis vinifera];; (*SWP) sp|Q93WY4|WRK12_ARATH (e_value=1e-50) Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1;; (*TAIR) AT2G44745.1 (e_value=9e-52) | Symbols: | WRKY family transcription factor | chr2:18447482-18449004 REVERSE LENGTH=218;; (*ITAG) Solyc01g089960.2.1 (e_value=9e-81) genomic_reference:SL2.40ch01 gene_region:75418839-75424413 transcript_region:SL2.40ch01:75418839..75424413- go_terms:GO:0045449 functional_description:"WRKY family transcription factor (AHRD V1 *-*- D7LBR5_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010724g0024.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|1|0.33|0|4|383|507; (*GB) gi|225453344|ref|XP_002270492.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Vitis vinifera];; (*SWP) sp|Q8LPS6|PPR3_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2;; (*TAIR) AT1G02150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:408779-410433 FORWARD LENGTH=524;; (*ITAG) Solyc01g089870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75358879-75362023 transcript_region:SL2.40ch01:75358879..75362023- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP29_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010724g0023.1 protein AED:0.33 eAED:0.36 QI:10|0.62|0.70|1|0.25|0.47|17|406|496; (*GB) gi|255571039|ref|XP_002526470.1| (e_value=0.0) glycosyltransferase, putative [Ricinus communis];; (*SWP) sp|A8MR93|ALG12_ARATH (e_value=0.0) Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase OS=Arabidopsis thaliana GN=ALG12 PE=1 SV=1;; (*TAIR) AT1G02145.3 (e_value=0.0) | Symbols: ALG12, EBS4 | homolog of asparagine-linked glycosylation 12 | chr1:404627-408485 FORWARD LENGTH=497;; (*ITAG) Solyc01g089900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75366257-75382297 transcript_region:SL2.40ch01:75366257..75382297- go_terms:GO:0000009 functional_description:"Alpha-mannosyltransferase (AHRD V1 **** B7FU21_PHATR); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0000009 NbS00010724g0025.1 protein AED:0.27 eAED:0.33 QI:0|0.16|0.14|0.85|0.16|0.28|7|0|411; (*GB) gi|224114976|ref|XP_002316907.1| (e_value=5e-11) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g009920.1.1 (e_value=1e-124) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3397388-3398827 transcript_region:SL2.40ch09:3397388..3398827- functional_description:"F-box family protein (AHRD V1 ***- D7MLR5_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00010724g0026.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|94; (*ITAG) Solyc01g089950.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:75414938-75416835 transcript_region:SL2.40ch01:75414938..75416835+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013596 FBD "; NbS00010724g0017.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|463; (*GB) gi|224092534|ref|XP_002309650.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=0.0) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=0.0) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc01g089910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75383651-75385711 transcript_region:SL2.40ch01:75383651..75385711- functional_description:"Flotillin domain protein (AHRD V1 ***- B8M1F1_TALSN); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00031331g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|360; (*GB) gi|225442709|ref|XP_002284872.1| (e_value=5e-141) PREDICTED: F-box/kelch-repeat protein At1g80440 [Vitis vinifera];; (*SWP) sp|Q9LMR5|FK126_ARATH (e_value=2e-110) F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1;; (*TAIR) AT1G15670.1 (e_value=1e-111) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5390119-5391198 FORWARD LENGTH=359;; (*ITAG) Solyc03g120330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62808621-62809706 transcript_region:SL2.40ch03:62808621..62809706- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDI0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00031331g0007.1 protein AED:0.22 eAED:0.22 QI:147|0.8|0.72|1|0.8|0.81|11|277|783; (*GB) gi|262263157|dbj|BAI48081.1| (e_value=0.0) centromere protein C homologue [Nicotiana tabacum];; (*TAIR) AT1G15660.1 (e_value=7e-21) | Symbols: CENP-C | centromere protein C | chr1:5381230-5385057 FORWARD LENGTH=705;; (*ITAG) Solyc03g120340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62813294-62819881 transcript_region:SL2.40ch03:62813294..62819881- functional_description:"CENP-C (Fragment) (AHRD V1 *--- Q66LG8_SOLLC)"; NbS00049232g0012.1 protein AED:0.25 eAED:0.27 QI:0|0.72|0.57|0.94|0.83|0.89|19|0|731; (*GB) gi|218188952|gb|EEC71379.1| (e_value=0.0) hypothetical protein OsI_03495 [Oryza sativa Indica Group];; (*SWP) sp|P32492|MYO4_YEAST (e_value=3e-70) Myosin-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MYO4 PE=1 SV=1;; (*TAIR) AT1G04160.1 (e_value=1e-172) | Symbols: XIB, ATXIB, XI-8, XI-B | myosin XI B | chr1:1086495-1096146 FORWARD LENGTH=1500;; (*ITAG) Solyc06g083960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00049232g0010.1 protein AED:0.50 eAED:0.53 QI:0|0.33|0|0.75|0.66|0.75|4|0|156; (*GB) gi|147787627|emb|CAN71597.1| (e_value=4e-24) hypothetical protein VITISV_019007 [Vitis vinifera];; (*TAIR) AT1G54560.1 (e_value=3e-20) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc06g083960.1.1 (e_value=7e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00049232g0011.1 protein AED:0.68 eAED:1.00 QI:0|0|0|0.25|0.33|0.75|4|0|103 NbS00049232g0009.1 protein AED:0.55 eAED:1.00 QI:0|0|0|1|0|0|3|0|64 NbS00007590g0004.1 protein AED:0.44 eAED:0.45 QI:37|0.66|0.5|1|0.33|0.5|4|93|53 NbS00007590g0006.1 protein AED:0.83 eAED:0.83 QI:28|0|0|0.5|0|0|2|0|61 NbS00031103g0001.1 protein AED:0.27 eAED:0.29 QI:283|0.5|0.33|1|1|1|3|0|526; (*GB) gi|225429331|ref|XP_002271922.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257657 [Vitis vinifera];; (*TAIR) AT3G19540.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr3:6780762-6782633 FORWARD LENGTH=485;; (*ITAG) Solyc01g107350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86675216-86677739 transcript_region:SL2.40ch01:86675216..86677739- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00014669g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|463; (*GB) gi|225444349|ref|XP_002265911.1| (e_value=0.0) PREDICTED: cytochrome P450 77A3 [Vitis vinifera];; (*SWP) sp|O48928|C77A3_SOYBN (e_value=5e-127) Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1;; (*TAIR) AT1G11600.1 (e_value=0.0) | Symbols: CYP77B1 | cytochrome P450, family 77, subfamily B, polypeptide 1 | chr1:3902090-3903622 FORWARD LENGTH=510;; (*ITAG) Solyc02g080330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39155928-39158157 transcript_region:SL2.40ch02:39155928..39158157+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017011g0017.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|0|381; (*GB) gi|147865453|emb|CAN79406.1| (e_value=6e-145) hypothetical protein VITISV_000710 [Vitis vinifera];; (*SWP) sp|Q9Y305|ACOT9_HUMAN (e_value=2e-27) Acyl-coenzyme A thioesterase 9, mitochondrial OS=Homo sapiens GN=ACOT9 PE=1 SV=2;; (*TAIR) AT2G30720.1 (e_value=6e-135) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr2:13089604-13091538 REVERSE LENGTH=455;; (*ITAG) Solyc12g019490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10584321-10593011 transcript_region:SL2.40ch12:10584321..10593011- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00017011g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.42|0.85|0.66|0.71|7|0|710; (*GB) gi|225434141|ref|XP_002274969.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250760 [Vitis vinifera];; (*SWP) sp|Q7Z9H9|FIG4_SCHPO (e_value=3e-19) Polyphosphoinositide phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1093.03 PE=2 SV=3;; (*TAIR) AT3G59770.1 (e_value=0.0) | Symbols: SAC9 | sacI homology domain-containing protein / WW domain-containing protein | chr3:22079281-22085674 REVERSE LENGTH=1630;; (*ITAG) Solyc08g044400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:32179056-32199357 transcript_region:SL2.40ch08:32179056..32199357+ go_terms:GO:0004437 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 *--* B6K225_SCHJY); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0004437 NbS00017011g0013.1 protein AED:0.28 eAED:0.28 QI:38|1|0.75|1|1|1|4|381|376; (*GB) gi|255567768|ref|XP_002524862.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G59770.2 (e_value=5e-159) | Symbols: SAC9 | sacI homology domain-containing protein / WW domain-containing protein | chr3:22079281-22084785 REVERSE LENGTH=1405;; (*ITAG) Solyc08g044400.1.1 (e_value=3e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:32179056-32199357 transcript_region:SL2.40ch08:32179056..32199357+ go_terms:GO:0004437 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 *--* B6K225_SCHJY); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0004437 NbS00017011g0011.1 protein AED:0.20 eAED:0.70 QI:630|0.5|0.6|0.8|0.25|0.4|5|277|89 NbS00028846g0002.1 protein AED:0.35 eAED:0.41 QI:0|0|0|1|1|1|3|425|77; (*GB) gi|357512497|ref|XP_003626537.1| (e_value=6e-42) Ubiquitin carrier protein [Medicago truncatula];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=9e-43) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=7e-44) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=9e-45) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00007232g0009.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.5|4|0|603; (*GB) gi|255538316|ref|XP_002510223.1| (e_value=0.0) glycogenin, putative [Ricinus communis];; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.2 (e_value=0.0) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063061 REVERSE LENGTH=626;; (*ITAG) Solyc04g078990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61201799-61205926 transcript_region:SL2.40ch04:61201799..61205926- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00007232g0010.1 protein AED:0.24 eAED:0.29 QI:85|0.66|0.9|1|0.88|0.8|10|48|308; (*GB) gi|224136756|ref|XP_002326937.1| (e_value=2e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZB2|TIC22_ARATH (e_value=8e-109) Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1;; (*TAIR) AT4G33350.1 (e_value=6e-110) | Symbols: | Tic22-like family protein | chr4:16064638-16066715 REVERSE LENGTH=268;; (*ITAG) Solyc04g079000.2.1 (e_value=5e-156) genomic_reference:SL2.40ch04 gene_region:61208145-61212920 transcript_region:SL2.40ch04:61208145..61212920- functional_description:"Tic22 (AHRD V1 ***- Q9ZST9_PEA); contains Interpro domain(s) IPR007378 Tic22-like "; NbS00046909g0009.1 protein AED:0.12 eAED:0.15 QI:52|0|0|1|0|0.33|3|151|237; (*GB) gi|195617694|gb|ACG30677.1| (e_value=4e-50) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=8e-51) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=6e-52) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=5e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00046909g0008.1 protein AED:0.16 eAED:0.16 QI:108|1|1|1|0.75|0.8|5|232|349; (*GB) gi|147842469|emb|CAN63142.1| (e_value=3e-174) hypothetical protein VITISV_034576 [Vitis vinifera];; (*TAIR) AT2G39570.1 (e_value=4e-119) | Symbols: | ACT domain-containing protein | chr2:16507963-16509741 FORWARD LENGTH=411;; (*ITAG) Solyc05g054620.2.1 (e_value=1e-121) genomic_reference:SL2.40ch05 gene_region:63640937-63645239 transcript_region:SL2.40ch05:63640937..63645239+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TDN9_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00025568g0007.1 protein AED:0.47 eAED:0.64 QI:0|0|0|0.75|0.66|0.75|4|0|179; (*GB) gi|6164969|gb|AAF04603.1|AF195939_1 (e_value=2e-23) disease resistance protein Gpa2 [Solanum tuberosum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=3e-13) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT5G48620.1 (e_value=9e-13) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc05g007630.2.1 (e_value=6e-26) genomic_reference:SL2.40ch05 gene_region:2145078-2149204 transcript_region:SL2.40ch05:2145078..2149204- go_terms:GO:0006952,GO:0045893,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0045893,GO:0006915 NbS00025568g0006.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.2|0.5|0.6|5|0|212; (*GB) gi|364285561|gb|AEW48198.1| (e_value=4e-16) disease resistance protein RGH4 [Solanum x edinense];; (*ITAG) Solyc12g010660.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3608095-3608844 transcript_region:SL2.40ch12:3608095..3608844+ go_terms:GO:0006952,GO:0006915 functional_description:"Nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00025568g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|246; (*GB) gi|169667043|gb|ACA64094.1| (e_value=2e-69) WOX2 [Petunia x hybrida];; (*SWP) sp|Q6X7K1|WOX2_ARATH (e_value=1e-36) WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2 SV=1;; (*TAIR) AT5G59340.1 (e_value=1e-37) | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933408-23934627 REVERSE LENGTH=260;; (*ITAG) Solyc06g076000.1.1 (e_value=5e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43575589-43577001 transcript_region:SL2.40ch06:43575589..43577001+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00003504g0018.1 protein AED:0.15 eAED:0.15 QI:138|0.92|1|1|1|1|14|513|624; (*GB) gi|297745052|emb|CBI38644.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8K4Q7|CERK1_MOUSE (e_value=4e-38) Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=2;; (*TAIR) AT5G51290.1 (e_value=0.0) | Symbols: | Diacylglycerol kinase family protein | chr5:20844252-20848157 REVERSE LENGTH=608;; (*ITAG) Solyc05g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3023478-3033476 transcript_region:SL2.40ch05:3023478..3033476+ go_terms:GO:0001729 functional_description:"Ceramide kinase (AHRD V1 **** Q6USK2_ARATH); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0001729 NbS00003504g0025.1 protein AED:0.04 eAED:0.12 QI:77|0.76|0.57|1|0.84|0.71|14|0|1788; (*GB) gi|297745622|emb|CBI40787.3| (e_value=9e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G20970.1 (e_value=2e-93) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7314338-7319246 FORWARD LENGTH=1364;; (*ITAG) Solyc05g008780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3003423-3014261 transcript_region:SL2.40ch05:3003423..3014261- functional_description:"Proton pump interactor 1 (AHRD V1 *--- D5L6G0_SOLTU)"; NbS00003504g0021.1 protein AED:0.17 eAED:0.19 QI:310|0.71|0.5|1|0.42|0.25|8|1559|222; (*GB) gi|15218051|ref|NP_172961.1| (e_value=2e-29) Lipid phosphate phosphatase 2 [Arabidopsis thaliana];; (*SWP) sp|Q9XI60|LPP2_ARATH (e_value=5e-31) Lipid phosphate phosphatase 2 OS=Arabidopsis thaliana GN=LPP2 PE=2 SV=1;; (*TAIR) AT1G15080.1 (e_value=4e-32) | Symbols: ATPAP2, ATLPP2, LPP2 | lipid phosphate phosphatase 2 | chr1:5188080-5189476 FORWARD LENGTH=290;; (*ITAG) Solyc05g008800.2.1 (e_value=4e-22) genomic_reference:SL2.40ch05 gene_region:3036036-3039708 transcript_region:SL2.40ch05:3036036..3039708- go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00003504g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.75|0.6|1|1|1|5|389|243; (*GB) gi|218201024|gb|EEC83451.1| (e_value=1e-86) hypothetical protein OsI_28949 [Oryza sativa Indica Group];; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=1e-71) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.1 (e_value=1e-72) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:551534-554411 FORWARD LENGTH=364;; (*ITAG) Solyc05g008810.2.1 (e_value=1e-108) genomic_reference:SL2.40ch05 gene_region:3043133-3047831 transcript_region:SL2.40ch05:3043133..3047831- go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00003504g0019.1 protein AED:0.39 eAED:0.39 QI:62|0.87|0.55|1|1|0.88|9|0|622; (*GB) gi|357135458|ref|XP_003569326.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Brachypodium distachyon];; (*SWP) sp|O60113|YG64_SCHPO (e_value=1e-59) Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=2 SV=1;; (*TAIR) AT2G01170.1 (e_value=0.0) | Symbols: BAT1 | bidirectional amino acid transporter 1 | chr2:102364-104462 REVERSE LENGTH=516;; (*ITAG) Solyc05g008760.2.1 (e_value=1e-176) genomic_reference:SL2.40ch05 gene_region:2991698-2994463 transcript_region:SL2.40ch05:2991698..2994463- go_terms:GO:0016020 functional_description:"Amino acid permease (AHRD V1 ***- B6SYL4_MAIZE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00017690g0011.1 protein AED:0.22 eAED:0.24 QI:69|0.61|0.5|1|0.74|0.68|32|0|1935; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc05g053610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62822197-62829504 transcript_region:SL2.40ch05:62822197..62829504- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00018447g0010.1 protein AED:0.10 eAED:0.10 QI:2298|0.33|0.5|1|1|1|4|386|251; (*GB) gi|356564442|ref|XP_003550463.1| (e_value=5e-46) PREDICTED: uncharacterized protein LOC100794732 [Glycine max];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-21) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=1e-35) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=1e-43) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00033800g0007.1 protein AED:0.31 eAED:0.31 QI:196|0.66|0.7|1|0.66|0.6|10|0|522; (*GB) gi|147799985|emb|CAN72662.1| (e_value=0.0) hypothetical protein VITISV_013890 [Vitis vinifera];; (*SWP) sp|Q7XI08|XB34_ORYSJ (e_value=2e-155) Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1;; (*TAIR) AT3G23280.2 (e_value=1e-141) | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis thaliana | chr3:8321588-8324109 FORWARD LENGTH=438;; (*ITAG) Solyc09g090160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65046640-65052937 transcript_region:SL2.40ch09:65046640..65052937+ go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 *--- B6U990_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00033800g0006.1 protein AED:0.51 eAED:0.57 QI:355|0|0.16|0.33|1|1|6|0|149 NbS00021936g0004.1 protein AED:0.11 eAED:0.12 QI:265|0.66|0.5|0.75|1|1|4|0|466; (*GB) gi|225458778|ref|XP_002285118.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252320 [Vitis vinifera];; (*TAIR) AT3G19540.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr3:6780762-6782633 FORWARD LENGTH=485;; (*ITAG) Solyc01g107350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86675216-86677739 transcript_region:SL2.40ch01:86675216..86677739- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00037312g0013.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.33|0.5|4|0|365; (*GB) gi|126567463|dbj|BAF48330.1| (e_value=0.0) iron transporter protein IRT1 [Nicotiana tabacum];; (*SWP) sp|Q8W245|ZIP10_ARATH (e_value=1e-131) Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2;; (*TAIR) AT1G31260.1 (e_value=9e-133) | Symbols: ZIP10 | zinc transporter 10 precursor | chr1:11175559-11177362 REVERSE LENGTH=364;; (*ITAG) Solyc02g069200.1.1 (e_value=4e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33736849-33738098 transcript_region:SL2.40ch02:33736849..33738098- go_terms:GO:0005381 functional_description:"Zinc transporter protein (AHRD V1 **** C0L438_9MAGN); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005381 NbS00037312g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.66|0.5|4|0|352; (*GB) gi|126567463|dbj|BAF48330.1| (e_value=1e-153) iron transporter protein IRT1 [Nicotiana tabacum];; (*SWP) sp|Q38856|IRT1_ARATH (e_value=5e-120) Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2;; (*TAIR) AT4G19690.2 (e_value=4e-121) | Symbols: IRT1 | iron-regulated transporter 1 | chr4:10707487-10708723 FORWARD LENGTH=347;; (*ITAG) Solyc02g069210.2.1 (e_value=4e-160) genomic_reference:SL2.40ch02 gene_region:33739071-33741696 transcript_region:SL2.40ch02:33739071..33741696- go_terms:GO:0046873 functional_description:"Metal ion transporter-like protein (AHRD V1 **** B4YHA7_HORVU); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0046873 NbS00037312g0011.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0.2|0.8|0.5|0.4|5|0|465; (*GB) gi|126567463|dbj|BAF48330.1| (e_value=0.0) iron transporter protein IRT1 [Nicotiana tabacum];; (*SWP) sp|Q8W245|ZIP10_ARATH (e_value=9e-124) Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2;; (*TAIR) AT1G31260.1 (e_value=7e-125) | Symbols: ZIP10 | zinc transporter 10 precursor | chr1:11175559-11177362 REVERSE LENGTH=364;; (*ITAG) Solyc02g069200.1.1 (e_value=7e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33736849-33738098 transcript_region:SL2.40ch02:33736849..33738098- go_terms:GO:0005381 functional_description:"Zinc transporter protein (AHRD V1 **** C0L438_9MAGN); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005381 NbS00025617g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|61; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=1e-15) malonyltransferase [Nicotiana tabacum]; NbS00009415g0004.1 protein AED:0.46 eAED:0.46 QI:0|0.14|0|0.37|1|1|8|0|233; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=6e-66) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=2e-51) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094610.1.1 (e_value=2e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49748558-49757941 transcript_region:SL2.40ch02:49748558..49757941- functional_description:"Transportin (AHRD V1 ***- Q17F50_AEDAE)"; NbS00009415g0006.1 protein AED:0.52 eAED:0.54 QI:0|0|0|0.5|1|1|4|0|146; (*GB) gi|147795491|emb|CAN65470.1| (e_value=2e-41) hypothetical protein VITISV_008981 [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=3e-29) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094610.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49748558-49757941 transcript_region:SL2.40ch02:49748558..49757941- functional_description:"Transportin (AHRD V1 ***- Q17F50_AEDAE)"; NbS00009415g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|1|0.85|7|0|353; (*GB) gi|255542820|ref|XP_002512473.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=0.0) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=0.0) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00010321g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0|0.5|1|1|4|0|113; (*GB) gi|192911946|gb|ACF06581.1| (e_value=5e-74) translational initiation factor eIF1 [Elaeis guineensis];; (*SWP) sp|Q0D5W6|SUI1_ORYSJ (e_value=4e-73) Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1;; (*TAIR) AT1G54290.1 (e_value=6e-72) | Symbols: | Translation initiation factor SUI1 family protein | chr1:20268710-20269390 REVERSE LENGTH=113;; (*ITAG) Solyc10g006470.2.1 (e_value=7e-80) genomic_reference:SL2.40ch10 gene_region:1067254-1069731 transcript_region:SL2.40ch10:1067254..1069731- go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00011053g0001.1 protein AED:0.36 eAED:0.41 QI:0|0|0|1|1|1|2|0|79 NbS00054406g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|40748265|gb|AAR89617.1| (e_value=2e-71) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|Q9ZUT9|RS51_ARATH (e_value=8e-71) 40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1;; (*TAIR) AT2G37270.2 (e_value=6e-72) | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | chr2:15647883-15649042 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=5e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00054406g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.87|0.55|1|0.75|0.66|9|0|449; (*GB) gi|356533598|ref|XP_003535349.1| (e_value=9e-170) PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max];; (*SWP) sp|Q9MA98|ERCC1_ARATH (e_value=2e-148) DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1;; (*TAIR) AT3G05210.1 (e_value=1e-149) | Symbols: ERCC1, UVR7 | nucleotide repair protein, putative | chr3:1479591-1481823 FORWARD LENGTH=410;; (*ITAG) Solyc03g115580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59290076-59293960 transcript_region:SL2.40ch03:59290076..59293960- go_terms:GO:0017108 functional_description:"DNA excision repair protein 1 (AHRD V1 *-*- D3BNU3_POLPA); contains Interpro domain(s) IPR004579 DNA repair protein rad10 "; GO:0017108 NbS00008882g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0.5|0.33|3|0|328; (*GB) gi|12003376|gb|AAG43545.1|AF211527_1 (e_value=4e-99) Avr9/Cf-9 rapidly elicited protein 1 [Nicotiana tabacum];; (*SWP) sp|O80341|EF102_ARATH (e_value=2e-35) Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G47230.1 (e_value=2e-36) | Symbols: ERF5, ATERF-5, ATERF5 | ethylene responsive element binding factor 5 | chr5:19180072-19180974 FORWARD LENGTH=300;; (*ITAG) Solyc08g078190.1.1 (e_value=3e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59192455-59193423 transcript_region:SL2.40ch08:59192455..59193423+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00034130g0008.1 protein AED:0.18 eAED:0.23 QI:169|0.28|0.5|0.87|0|0.12|8|170|330; (*GB) gi|297744265|emb|CBI37235.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G20230.1 (e_value=1e-44) | Symbols: | Tetraspanin family protein | chr2:8725762-8727388 FORWARD LENGTH=270;; (*ITAG) Solyc09g063070.2.1 (e_value=3e-103) genomic_reference:SL2.40ch09 gene_region:56657761-56663158 transcript_region:SL2.40ch09:56657761..56663158+ functional_description:"Senescence-associated protein-like (ISS) (AHRD V1 ***- Q00X72_OSTTA)"; NbS00034130g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.14|1|0.33|0.14|7|0|1054; (*GB) gi|225437896|ref|XP_002267519.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241277 [Vitis vinifera];; (*TAIR) AT4G28760.2 (e_value=2e-135) | Symbols: | Protein of unknown function (DUF3741) | chr4:14208640-14211811 FORWARD LENGTH=924;; (*ITAG) Solyc09g063080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:56663937-56667406 transcript_region:SL2.40ch09:56663937..56667406- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6B6 (AHRD V1 ***- Q9LKC1_ARATH)"; GO:0005515 NbS00045296g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|193; (*ITAG) Solyc07g009200.1.1 (e_value=7e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:4244968-4245528 transcript_region:SL2.40ch07:4244968..4245528- functional_description:"Unknown Protein (AHRD V1)"; NbS00045296g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|53749455|gb|AAU90310.1| (e_value=1e-16) hypothetical protein STB1_54t00008 [Solanum tuberosum];; (*ITAG) Solyc06g062440.2.1 (e_value=3e-34) genomic_reference:SL2.40ch06 gene_region:35780427-35784240 transcript_region:SL2.40ch06:35780427..35784240- go_terms:GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006915 NbS00045296g0008.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0|0|6|0|416; (*GB) gi|356600306|gb|AET22504.1| (e_value=1e-85) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-53) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=3e-44) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc07g009180.1.1 (e_value=8e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006246g0011.1 protein AED:0.02 eAED:0.02 QI:175|1|1|1|1|1|2|344|148; (*GB) gi|225461030|ref|XP_002281236.1| (e_value=5e-81) PREDICTED: uncharacterized protein LOC100252146 [Vitis vinifera];; (*TAIR) AT5G54855.1 (e_value=1e-72) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:22282902-22284251 FORWARD LENGTH=146;; (*ITAG) Solyc12g005150.1.1 (e_value=4e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:112568-115959 transcript_region:SL2.40ch12:112568..115959- functional_description:"Pollen ole e 1 allergen and extensin family protein (AHRD V1 ***- D7MUX1_ARALY); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00006246g0002.1 protein AED:0.17 eAED:0.17 QI:151|0.85|0.75|1|0.57|0.62|8|351|497; (*GB) gi|224115292|ref|XP_002316993.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54860.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:22284721-22287025 FORWARD LENGTH=491;; (*ITAG) Solyc12g005140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:105280-111748 transcript_region:SL2.40ch12:105280..111748- go_terms:GO:0005215 functional_description:"Folate/biopterin transporter family protein (AHRD V1 **** B6TYM7_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00006246g0013.1 protein AED:0.17 eAED:0.18 QI:18|1|0.71|1|1|1|7|0|526; (*GB) gi|255563941|ref|XP_002522970.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63821907-63828376 transcript_region:SL2.40ch07:63821907..63828376+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00006246g0014.1 protein AED:0.31 eAED:0.36 QI:0|0.33|0|1|0.66|0.75|4|0|529; (*GB) gi|225460995|ref|XP_002278340.1| (e_value=6e-44) PREDICTED: uncharacterized protein LOC100257339 [Vitis vinifera];; (*TAIR) AT5G54930.1 (e_value=8e-23) | Symbols: | AT hook motif-containing protein | chr5:22305897-22306839 REVERSE LENGTH=286;; (*ITAG) Solyc12g005110.1.1 (e_value=1e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:93794-94826 transcript_region:SL2.40ch12:93794..94826+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 **-- Q9FFT7_ARATH); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00005377g0006.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|255557377|ref|XP_002519719.1| (e_value=1e-59) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ASX9|BH144_ARATH (e_value=2e-26) Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1;; (*TAIR) AT1G29950.2 (e_value=1e-27) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10493461-10494216 FORWARD LENGTH=251;; (*ITAG) Solyc02g070880.1.1 (e_value=4e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35058721-35059461 transcript_region:SL2.40ch02:35058721..35059461+ go_terms:GO:0030528 functional_description:"BHLH1 transcription factor (AHRD V1 **** D6BP02_HEVBR); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0030528 NbS00005377g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|1171; (*GB) gi|359483612|ref|XP_002272319.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=0.0) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g070890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35066723-35070830 transcript_region:SL2.40ch02:35066723..35070830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00005377g0023.1 protein AED:0.38 eAED:0.38 QI:94|0|0.66|1|0|0|3|240|342; (*GB) gi|3036946|dbj|BAA25391.1| (e_value=8e-171) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=1e-170) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=3e-153) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=2e-167) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00005377g0022.1 protein AED:0.39 eAED:0.39 QI:298|1|1|1|0|0|2|152|265; (*GB) gi|3036946|dbj|BAA25391.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=1e-175) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00005377g0008.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|258; (*GB) gi|3036946|dbj|BAA25391.1| (e_value=2e-175) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=5e-175) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-159) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=7e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00005377g0020.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|0|0.33|3|0|83 NbS00005377g0019.1 protein AED:0.02 eAED:0.03 QI:138|1|0.5|1|0|0|2|0|397; (*GB) gi|356527140|ref|XP_003532171.1| (e_value=5e-101) PREDICTED: probable purine permease 9-like [Glycine max];; (*SWP) sp|O49726|PUP9_ARATH (e_value=1e-101) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18220.1 (e_value=3e-97) | Symbols: | Drug/metabolite transporter superfamily protein | chr4:10078768-10080109 FORWARD LENGTH=344;; (*ITAG) Solyc02g071060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35127292-35128693 transcript_region:SL2.40ch02:35127292..35128693- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00005377g0018.1 protein AED:0.25 eAED:0.25 QI:25|0.93|0.94|1|0.81|0.76|17|0|1017; (*GB) gi|350538831|ref|NP_001234617.1| (e_value=0.0) starch synthase IV [Solanum lycopersicum];; (*SWP) sp|Q6MAS9|GLGA_PARUW (e_value=5e-149) Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1;; (*TAIR) AT4G18240.1 (e_value=0.0) | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | chr4:10082221-10087044 FORWARD LENGTH=1040;; (*ITAG) Solyc02g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35105072-35115016 transcript_region:SL2.40ch02:35105072..35115016- go_terms:GO:0016757 functional_description:"Glycogen synthase (AHRD V1 *-*- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757 NbS00005377g0012.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.14|1|1|7|0|346; (*GB) gi|147857735|emb|CAN78668.1| (e_value=2e-23) hypothetical protein VITISV_031288 [Vitis vinifera];; (*ITAG) Solyc02g070900.1.1 (e_value=4e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35071210-35071890 transcript_region:SL2.40ch02:35071210..35071890- functional_description:"Unknown Protein (AHRD V1)"; NbS00005377g0026.1 protein AED:0.25 eAED:0.40 QI:29|0|0|1|0|0|2|0|168; (*GB) gi|297740649|emb|CBI30831.3| (e_value=4e-21) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g071050.2.1 (e_value=4e-24) genomic_reference:SL2.40ch02 gene_region:35117190-35119237 transcript_region:SL2.40ch02:35117190..35119237- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00025044g0111.1 protein AED:0.42 eAED:0.50 QI:0|0.63|0.5|0.91|0.72|0.75|12|143|303 NbS00025044g0102.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.90|1|1|1|11|0|980 NbS00025044g0110.1 protein AED:0.26 eAED:0.26 QI:154|0.85|0.87|1|1|1|8|515|613 NbS00012471g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|173|252; (*GB) gi|350535593|ref|NP_001234714.1| (e_value=1e-149) osmotin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|Q41350|OLP1_SOLLC (e_value=3e-151) Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G28790.1 (e_value=2e-131) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr2:12354664-12355413 REVERSE LENGTH=249;; (*ITAG) Solyc11g066130.1.1 (e_value=2e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48890355-48891113 transcript_region:SL2.40ch11:48890355..48891113+ functional_description:"Thaumatin-like protein (AHRD V1 **-- D2KU75_CITJA); contains Interpro domain(s) IPR017949 Thaumatin, conserved site IPR001938 Thaumatin, pathogenesis-related "; NbS00018251g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|0.33|0.5|4|1090|344; (*GB) gi|326534430|gb|ADZ76433.1| (e_value=0.0) myricetin O-methyltransferase 1 [Solanum habrochaites];; (*SWP) sp|Q8W013|COMT1_CATRO (e_value=6e-125) Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1;; (*TAIR) AT5G54160.1 (e_value=2e-118) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc06g007960.2.1 (e_value=5e-123) genomic_reference:SL2.40ch06 gene_region:1816553-1820314 transcript_region:SL2.40ch06:1816553..1820314+ go_terms:GO:0033799 functional_description:"O-methyltransferase (AHRD V1 **** Q9LWB8_9ROSI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0033799 NbS00018251g0007.1 protein AED:0.24 eAED:0.26 QI:406|1|0.94|1|0.72|0.78|19|0|795; (*GB) gi|49523569|emb|CAF18246.1| (e_value=0.0) STY-L protein [Antirrhinum majus];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=9e-142) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.6 (e_value=0.0) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785;; (*ITAG) Solyc06g083460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45145760-45153363 transcript_region:SL2.40ch06:45145760..45153363- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00019593g0003.1 protein AED:0.37 eAED:0.71 QI:0|-1|0|1|-1|1|1|0|286; (*GB) gi|255573103|ref|XP_002527481.1| (e_value=8e-40) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=1e-11) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT3G06240.1 (e_value=2e-13) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc10g008580.1.1 (e_value=2e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00024896g0011.1 protein AED:0.35 eAED:0.35 QI:0|0.71|0.37|1|0.57|0.62|8|0|342; (*GB) gi|255546199|ref|XP_002514159.1| (e_value=0.0) protein arginine n-methyltransferase 1, putative [Ricinus communis];; (*SWP) sp|Q9SU94|ANM11_ARATH (e_value=0.0) Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1;; (*TAIR) AT4G29510.1 (e_value=0.0) | Symbols: ATPRMT11, PRMT11, ATPRMT1B, PRMT1B | arginine methyltransferase 11 | chr4:14491739-14493752 FORWARD LENGTH=390;; (*ITAG) Solyc07g032240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:36157691-36162664 transcript_region:SL2.40ch07:36157691..36162664+ go_terms:GO:0008469 functional_description:"Protein arginine N-methyltransferase 1 (AHRD V1 **** B6TIG8_MAIZE)"; GO:0008469 NbS00024896g0008.1 protein AED:0.06 eAED:0.06 QI:28|1|0.85|1|0.66|0.85|7|0|301; (*GB) gi|297738696|emb|CBI27941.3| (e_value=5e-142) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29520.1 (e_value=3e-114) | Symbols: | LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi - 10; Plants - 36; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr4:14494056-14495657 REVERSE LENGTH=306;; (*ITAG) Solyc07g032250.2.1 (e_value=3e-166) genomic_reference:SL2.40ch07 gene_region:36165100-36169372 transcript_region:SL2.40ch07:36165100..36169372- functional_description:"Homology to unknown gene (AHRD V1 ***- Q01FF7_OSTTA)"; NbS00020865g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|137; (*GB) gi|255571099|ref|XP_002526500.1| (e_value=3e-70) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT3G60210.1 (e_value=2e-65) | Symbols: | GroES-like family protein | chr3:22251443-22252709 REVERSE LENGTH=138;; (*ITAG) Solyc01g088610.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:75132658-75135971 transcript_region:SL2.40ch01:75132658..75135971- functional_description:"chaperonin (AHRD V1 ***- B5IMI3_9CHRO); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 "; NbS00036963g0005.1 protein AED:0.27 eAED:0.32 QI:0|0.71|0.66|1|0.85|0.93|15|0|1070; (*GB) gi|255555993|ref|XP_002519031.1| (e_value=1e-137) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G11060.1 (e_value=3e-102) | Symbols: | WAPL (Wings apart-like protein regulation of heterochromatin) protein | chr1:3684568-3689537 FORWARD LENGTH=930;; (*ITAG) Solyc02g078560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37801010-37811610 transcript_region:SL2.40ch02:37801010..37811610+ functional_description:"Wings apart-like CG3707-RB isoform B (Fragment) (AHRD V1 *-*- B5AID2_DROME)"; NbS00036963g0006.1 protein AED:0.12 eAED:0.21 QI:0|1|0.5|1|1|0.5|2|0|151; (*GB) gi|224116144|ref|XP_002317224.1| (e_value=5e-65) predicted protein [Populus trichocarpa];; (*TAIR) AT3G51000.1 (e_value=8e-20) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=1e-79) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00018799g0010.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|438; (*GB) gi|359489179|ref|XP_002265098.2| (e_value=2e-82) PREDICTED: transcription factor bHLH91-like [Vitis vinifera];; (*SWP) sp|Q8GX46|BH091_ARATH (e_value=6e-46) Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1;; (*TAIR) AT2G31210.1 (e_value=5e-47) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13296655-13298139 FORWARD LENGTH=428;; (*ITAG) Solyc01g081100.1.1 (e_value=3e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72947158-72948750 transcript_region:SL2.40ch01:72947158..72948750- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00018799g0012.1 protein AED:0.08 eAED:0.13 QI:0|0|0|0.66|0.5|0.33|3|0|398; (*GB) gi|147798863|emb|CAN77001.1| (e_value=4e-51) hypothetical protein VITISV_003899 [Vitis vinifera];; (*SWP) sp|Q8GX46|BH091_ARATH (e_value=6e-40) Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1;; (*TAIR) AT2G31210.1 (e_value=4e-41) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13296655-13298139 FORWARD LENGTH=428;; (*ITAG) Solyc01g081090.1.1 (e_value=4e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72941172-72943240 transcript_region:SL2.40ch01:72941172..72943240- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- Q401N5_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00018799g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.28|0.25|1|0.57|0.5|8|0|471; (*GB) gi|110289634|gb|AAP55134.2| (e_value=1e-46) hypothetical protein LOC_Os10g42400 [Oryza sativa Japonica Group];; (*ITAG) Solyc01g081080.1.1 (e_value=5e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:72934758-72938138 transcript_region:SL2.40ch01:72934758..72938138- go_terms:GO:0005634,GO:0006260 functional_description:"Replication factor C subunit (AHRD V1 *-*- B8BYF4_THAPS); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005634,GO:0006260 NbS00027255g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|778; (*GB) gi|225445472|ref|XP_002281953.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Vitis vinifera];; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054762g0001.1 protein AED:0.07 eAED:0.22 QI:0|0.66|0.75|1|0|0.5|4|288|670; (*GB) gi|225443409|ref|XP_002267486.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g16830 [Vitis vinifera];; (*SWP) sp|Q3EDA9|PPR46_ARATH (e_value=4e-122) Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2;; (*TAIR) AT1G16830.1 (e_value=3e-123) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:5760793-5762619 FORWARD LENGTH=608;; (*ITAG) Solyc01g080450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72200333-72202127 transcript_region:SL2.40ch01:72200333..72202127- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054762g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.75|1|1|4|0|911; (*GB) gi|225432464|ref|XP_002277269.1| (e_value=0.0) PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Vitis vinifera];; (*SWP) sp|Q0WPJ7|RF298_ARATH (e_value=9e-151) Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1;; (*TAIR) AT4G03000.2 (e_value=7e-152) | Symbols: | RING/U-box superfamily protein | chr4:1324602-1327348 FORWARD LENGTH=814;; (*ITAG) Solyc01g080430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72177114-72182165 transcript_region:SL2.40ch01:72177114..72182165+ go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 2 (AHRD V1 *--- Q38JA8_CANFA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00002820g0009.1 protein AED:0.21 eAED:0.25 QI:148|0.75|0.4|1|0.75|0.6|5|0|192; (*GB) gi|76573357|gb|ABA46783.1| (e_value=5e-125) unknown [Solanum tuberosum];; (*SWP) sp|Q9ATF5|RL18A_CASSA (e_value=4e-117) 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1;; (*TAIR) AT3G14600.1 (e_value=5e-117) | Symbols: | Ribosomal protein L18ae/LX family protein | chr3:4910773-4911933 FORWARD LENGTH=178;; (*ITAG) Solyc02g070650.2.1 (e_value=9e-128) genomic_reference:SL2.40ch02 gene_region:34912165-34914546 transcript_region:SL2.40ch02:34912165..34914546+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae "; GO:0003735,GO:0005515 NbS00002820g0010.1 protein AED:0.19 eAED:0.19 QI:748|1|1|1|0.83|0.71|7|507|182; (*GB) gi|297740669|emb|CBI30851.3| (e_value=3e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|P52410|KASC1_ARATH (e_value=9e-113) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.2 (e_value=1e-114) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=418;; (*ITAG) Solyc08g016170.2.1 (e_value=2e-121) genomic_reference:SL2.40ch08 gene_region:6886393-6897476 transcript_region:SL2.40ch08:6886393..6897476+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl carrier protein) synthase II (AHRD V1 **** D6YNQ6_CHLT1); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00014783g0006.1 protein AED:0.24 eAED:0.24 QI:165|0.90|0.91|1|0.72|0.66|12|383|596; (*GB) gi|147862940|emb|CAN83206.1| (e_value=0.0) hypothetical protein VITISV_019937 [Vitis vinifera];; (*SWP) sp|Q53GS9|SNUT2_HUMAN (e_value=2e-155) U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2;; (*TAIR) AT4G22285.1 (e_value=0.0) | Symbols: | Ubiquitin C-terminal hydrolases superfamily protein | chr4:11779063-11781898 REVERSE LENGTH=541;; (*ITAG) Solyc02g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32994749-33000085 transcript_region:SL2.40ch02:32994749..33000085- go_terms:GO:0005515,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7ME50_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0005515,GO:0004197 NbS00014736g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|1|1|2|0|131; (*ITAG) Solyc03g097080.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00035700g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|225441720|ref|XP_002283046.1| (e_value=4e-63) PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 isoform 1 [Vitis vinifera];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=8e-52) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=4e-27) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc10g079080.1.1 (e_value=2e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60031853-60032371 transcript_region:SL2.40ch10:60031853..60032371- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00035700g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|222822685|gb|ACM68455.1| (e_value=2e-71) stress-associated protein 5 [Solanum pennellii];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=2e-53) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=3e-31) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc10g079080.1.1 (e_value=5e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60031853-60032371 transcript_region:SL2.40ch10:60031853..60032371- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00046313g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|1027; (*GB) gi|225447241|ref|XP_002272784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Vitis vinifera];; (*SWP) sp|Q9C9U0|PP118_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1;; (*TAIR) AT1G73710.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27721190-27724165 FORWARD LENGTH=991;; (*ITAG) Solyc07g054480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60117772-60120816 transcript_region:SL2.40ch07:60117772..60120816- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRL4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031974g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.5|1|1|1|4|0|484; (*GB) gi|146395463|gb|ABQ28669.1| (e_value=0.0) beta-fructofuranosidase [Solanum lycopersicum];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00031974g0030.1 protein AED:0.48 eAED:0.65 QI:0|0|0|0.66|0|0.33|3|0|133; (*GB) gi|146395463|gb|ABQ28669.1| (e_value=2e-42) beta-fructofuranosidase [Solanum lycopersicum];; (*ITAG) Solyc04g081440.2.1 (e_value=2e-44) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00031974g0028.1 protein AED:0.74 eAED:0.83 QI:0|0|0.05|0.11|0.82|0.83|18|0|382; (*GB) gi|302834038|ref|XP_002948582.1| (e_value=2e-30) hypothetical protein VOLCADRAFT_88817 [Volvox carteri f. nagariensis];; (*ITAG) Solyc04g081460.2.1 (e_value=2e-16) genomic_reference:SL2.40ch04 gene_region:63019842-63020627 transcript_region:SL2.40ch04:63019842..63020627- functional_description:"Unknown Protein (AHRD V1)"; NbS00031974g0033.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0.33|0.25|4|0|221; (*GB) gi|359492238|ref|XP_002279957.2| (e_value=9e-30) PREDICTED: uncharacterized protein LOC100259217 [Vitis vinifera];; (*ITAG) Solyc04g081450.2.1 (e_value=1e-65) genomic_reference:SL2.40ch04 gene_region:63015725-63019060 transcript_region:SL2.40ch04:63015725..63019060+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031974g0032.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|0|0.5|4|158|275; (*GB) gi|359492240|ref|XP_002275494.2| (e_value=8e-19) PREDICTED: uncharacterized protein LOC100242110 [Vitis vinifera];; (*ITAG) Solyc04g081470.2.1 (e_value=4e-14) genomic_reference:SL2.40ch04 gene_region:63024057-63026983 transcript_region:SL2.40ch04:63024057..63026983+ functional_description:"Os05g0596200 protein (Fragment) (AHRD V1 *-*- Q0DFE0_ORYSJ)"; NbS00031974g0031.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|129; (*ITAG) Solyc04g081180.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62780227-62780466 transcript_region:SL2.40ch04:62780227..62780466- functional_description:"Unknown Protein (AHRD V1)"; NbS00031974g0034.1 protein AED:0.42 eAED:0.47 QI:21|0.6|0.5|1|0|0|6|372|23 NbS00061527g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|107; (*ITAG) Solyc10g049530.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00030108g0003.1 protein AED:0.21 eAED:0.23 QI:0|1|0.75|1|1|1|4|418|230; (*GB) gi|42565125|ref|NP_188924.3| (e_value=2e-125) emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q769F9|TMEDA_DICDI (e_value=9e-24) Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1;; (*TAIR) AT3G22845.1 (e_value=5e-128) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214;; (*ITAG) Solyc09g082770.2.1 (e_value=1e-154) genomic_reference:SL2.40ch09 gene_region:63843639-63848297 transcript_region:SL2.40ch09:63843639..63848297+ go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00021832g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|629; (*GB) gi|147834193|emb|CAN75306.1| (e_value=0.0) hypothetical protein VITISV_040403 [Vitis vinifera];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=8e-116) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=6e-117) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc01g094600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77786297-77788190 transcript_region:SL2.40ch01:77786297..77788190+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00021832g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.85|1|1|0.85|7|92|441; (*GB) gi|255541596|ref|XP_002511862.1| (e_value=0.0) Rop guanine nucleotide exchange factor, putative [Ricinus communis];; (*SWP) sp|Q9LQ89|ROGF2_ARATH (e_value=0.0) Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2;; (*TAIR) AT1G01700.1 (e_value=0.0) | Symbols: ATROPGEF2, ROPGEF2 | RHO guanyl-nucleotide exchange factor 2 | chr1:259495-261474 REVERSE LENGTH=485;; (*ITAG) Solyc01g094610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77792278-77794407 transcript_region:SL2.40ch01:77792278..77794407+ go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 2 (AHRD V1 **-* ROGF2_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00021832g0020.1 protein AED:0.12 eAED:0.13 QI:87|0.62|0.52|0.88|0.87|0.82|17|0|2471; (*GB) gi|359489621|ref|XP_002274479.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera];; (*SWP) sp|Q54U49|MED12_DICDI (e_value=4e-15) Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium discoideum GN=med12 PE=3 SV=2;; (*TAIR) AT4G00450.1 (e_value=0.0) | Symbols: CRP, CCT | RNA polymerase II transcription mediators | chr4:202425-210666 FORWARD LENGTH=2253;; (*ITAG) Solyc01g094620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77794871-77810348 transcript_region:SL2.40ch01:77794871..77810348- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 12 (AHRD V1 *--- B2G3S6_ZYGRO); contains Interpro domain(s) IPR019035 Mediator complex, subunit Med12 "; GO:0016592 NbS00021832g0023.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|80; (*GB) gi|305671961|gb|ADM63350.1| (e_value=2e-44) photosystem II cp47 protein [Aralidium pinnatifidum];; (*SWP) sp|A4QLM0|PSBB_LOBMA (e_value=2e-42) Photosystem II CP47 chlorophyll apoprotein OS=Lobularia maritima GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=2e-43) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00045879g0004.1 protein AED:0.23 eAED:0.23 QI:1571|1|0.83|1|0.6|0.5|6|0|196; (*GB) gi|224141259|ref|XP_002323992.1| (e_value=3e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|B8G6P5|RL13_CHLAD (e_value=3e-35) 50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1;; (*TAIR) AT3G01790.2 (e_value=3e-100) | Symbols: | Ribosomal protein L13 family protein | chr3:283880-285583 REVERSE LENGTH=205;; (*ITAG) Solyc09g092090.2.1 (e_value=2e-128) genomic_reference:SL2.40ch09 gene_region:66585421-66588411 transcript_region:SL2.40ch09:66585421..66588411+ go_terms:GO:0003735 functional_description:"50S ribosomal protein L13 (AHRD V1 ***- B6TQ75_MAIZE); contains Interpro domain(s) IPR005823 Ribosomal protein L13, bacterial-type "; GO:0003735 NbS00045879g0002.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|108; (*ITAG) Solyc09g092100.2.1 (e_value=4e-14) genomic_reference:SL2.40ch09 gene_region:66589275-66608601 transcript_region:SL2.40ch09:66589275..66608601+ go_terms:GO:0005524 functional_description:"Predicted CDS Pa_5_8110 (Fragment) (AHRD V1 *--- B2AKK2_PODAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00014443g0004.1 protein AED:0.31 eAED:0.36 QI:0|0.66|0.5|1|0.66|0.75|4|214|339; (*GB) gi|225440145|ref|XP_002283240.1| (e_value=3e-144) PREDICTED: uncharacterized protein LOC100251643 [Vitis vinifera];; (*SWP) sp|A0JNC2|R3HD2_BOVIN (e_value=3e-12) R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1;; (*TAIR) AT3G56680.1 (e_value=5e-99) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353;; (*ITAG) Solyc10g078300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00006004g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|611; (*GB) gi|15418709|gb|AAG31013.1| (e_value=2e-75) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=4e-57) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=9e-26) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc09g064680.1.1 (e_value=1e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57622457-57624959 transcript_region:SL2.40ch09:57622457..57624959- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006915 NbS00006004g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|190607699|gb|ACE79508.1| (e_value=1e-74) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=3e-46) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-32) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=4e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00013146g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.66|1|1|3|0|84; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=5e-13) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*ITAG) Solyc09g008500.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1984459-1985345 transcript_region:SL2.40ch09:1984459..1985345- go_terms:GO:0005516 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q1PCI0_SOLCH); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516 NbS00013146g0011.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|160; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-31) hypothetical protein [Nicotiana tabacum]; NbS00013146g0009.1 protein AED:0.27 eAED:0.63 QI:0|0|0|0.75|0|0|4|0|197; (*ITAG) Solyc01g017760.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013146g0010.1 protein AED:0.35 eAED:0.37 QI:7|0|0|1|0|0|2|0|127; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-23) hypothetical protein [Nicotiana tabacum]; NbS00026031g0008.1 protein AED:0.00 eAED:0.00 QI:101|1|1|1|0|0.25|4|376|193; (*GB) gi|224099529|ref|XP_002311520.1| (e_value=3e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQU4|PCR2_ARATH (e_value=4e-63) Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1;; (*TAIR) AT1G14870.1 (e_value=3e-64) | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152;; (*ITAG) Solyc04g007900.2.1 (e_value=5e-111) genomic_reference:SL2.40ch04 gene_region:1572112-1574265 transcript_region:SL2.40ch04:1572112..1574265+ functional_description:"Cell number regulator 2 (AHRD V1 **-- B6TYV8_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00026031g0010.1 protein AED:0.16 eAED:0.22 QI:0|1|0|1|1|0.5|2|0|194; (*GB) gi|6651027|gb|AAF22135.1|AF127919_1 (e_value=4e-28) high mobility group protein I/Y [Brassica napus];; (*SWP) sp|Q00423|HMGYA_SOYBN (e_value=6e-21) HMG-Y-related protein A OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G14900.1 (e_value=5e-28) | Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204;; (*ITAG) Solyc04g007890.2.1 (e_value=3e-36) genomic_reference:SL2.40ch04 gene_region:1565887-1566751 transcript_region:SL2.40ch04:1565887..1566751+ go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group protein (AHRD V1 *--- Q42461_CANGL); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00026031g0006.1 protein AED:0.17 eAED:0.18 QI:0|0.33|0|1|0.66|0.75|4|0|537; (*GB) gi|224108299|ref|XP_002314794.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZU91|E133_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2;; (*TAIR) AT2G01630.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:279541-281955 REVERSE LENGTH=501;; (*ITAG) Solyc04g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00051302g0005.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|1|1|2|0|158; (*ITAG) Solyc08g007350.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00051302g0006.1 protein AED:0.30 eAED:0.30 QI:19|1|1|1|1|1|13|330|428; (*GB) gi|30690648|ref|NP_850472.1| (e_value=2e-69) flowering time control protein-like protein [Arabidopsis thaliana];; (*SWP) sp|O04425|FCA_ARATH (e_value=1e-63) Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2;; (*TAIR) AT2G47310.1 (e_value=3e-72) | Symbols: | flowering time control protein-related / FCA gamma-related | chr2:19423791-19426846 FORWARD LENGTH=512;; (*ITAG) Solyc08g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1932295-1943332 transcript_region:SL2.40ch08:1932295..1943332+ go_terms:GO:0003676,GO:0005515,GO:0000166 functional_description:"CUGBP Elav-like family member 5 (AHRD V1 *--- CELF5_HUMAN); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003676,GO:0005515,GO:0000166 NbS00037826g0004.1 protein AED:0.04 eAED:0.04 QI:135|0.85|0.62|1|1|1|8|0|852; (*GB) gi|166053040|emb|CAP69670.1| (e_value=1e-180) vicilin [Solanum lycopersicum];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=2e-100) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT3G22640.1 (e_value=4e-69) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486;; (*ITAG) Solyc09g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63490155-63493319 transcript_region:SL2.40ch09:63490155..63493319- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00002311g0012.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|4|0|433; (*GB) gi|315272010|gb|ADU02586.1| (e_value=0.0) pectate lyase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q93Z04|PLY13_ARATH (e_value=0.0) Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1;; (*TAIR) AT5G04310.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:1203356-1207352 REVERSE LENGTH=518;; (*ITAG) Solyc05g055510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64276549-64279462 transcript_region:SL2.40ch05:64276549..64279462+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LXH4_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00002311g0010.1 protein AED:0.12 eAED:0.12 QI:209|1|0.83|1|0.45|0.58|12|279|377; (*GB) gi|356574693|ref|XP_003555480.1| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100800445 [Glycine max];; (*SWP) sp|Q4QSC8|SGO1_MAIZE (e_value=2e-18) Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1;; (*TAIR) AT5G04320.2 (e_value=1e-29) | Symbols: | Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470;; (*ITAG) Solyc11g008090.1.1 (e_value=1e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2288710-2290634 transcript_region:SL2.40ch11:2288710..2290634- functional_description:"Shugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)"; NbS00002311g0014.1 protein AED:0.23 eAED:0.24 QI:0|1|0|1|0|0|2|0|474; (*GB) gi|255556860|ref|XP_002519463.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|O04375|2A5A_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1;; (*TAIR) AT5G03470.1 (e_value=0.0) | Symbols: ATB' ALPHA | Protein phosphatase 2A regulatory B subunit family protein | chr5:866795-868872 FORWARD LENGTH=495;; (*ITAG) Solyc10g083920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00017037g0010.1 protein AED:0.23 eAED:0.23 QI:167|1|1|1|0.5|0.66|3|509|231; (*GB) gi|359474801|ref|XP_002279494.2| (e_value=2e-69) PREDICTED: coiled-coil domain-containing protein 124-A-like [Vitis vinifera];; (*SWP) sp|Q9D8X2|CC124_MOUSE (e_value=2e-14) Coiled-coil domain-containing protein 124 OS=Mus musculus GN=Ccdc124 PE=2 SV=1;; (*TAIR) AT1G16210.1 (e_value=2e-66) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). | chr1:5546352-5547447 REVERSE LENGTH=234;; (*ITAG) Solyc01g111940.2.1 (e_value=2e-72) genomic_reference:SL2.40ch01 gene_region:89857764-89861925 transcript_region:SL2.40ch01:89857764..89861925+ functional_description:"Coiled-coil domain-containing protein 124 (AHRD V1 *-*- CC124_XENTR); contains Interpro domain(s) IPR010422 Protein of unknown function DUF1014 "; NbS00017037g0009.1 protein AED:0.08 eAED:0.08 QI:58|1|1|1|0|0.33|3|535|139; (*GB) gi|21593132|gb|AAM65081.1| (e_value=3e-13) amino acid permease-like protein [Arabidopsis thaliana];; (*SWP) sp|Q84WE9|LHTL7_ARATH (e_value=1e-14) Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2;; (*TAIR) AT4G35180.1 (e_value=9e-16) | Symbols: LHT7 | LYS/HIS transporter 7 | chr4:16738517-16740385 REVERSE LENGTH=478;; (*ITAG) Solyc10g055740.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52785894-52789352 transcript_region:SL2.40ch10:52785894..52789352- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9GQ40_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00047428g0003.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|1|1|2|0|822; (*GB) gi|147806293|emb|CAN76555.1| (e_value=0.0) hypothetical protein VITISV_011396 [Vitis vinifera];; (*SWP) sp|O23052|Y1515_ARATH (e_value=0.0) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=0.0) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00032219g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|255567848|ref|XP_002524902.1| (e_value=1e-58) hypothetical protein RCOM_0725500 [Ricinus communis];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=2e-18) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=1e-19) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc03g119230.1.1 (e_value=1e-116) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:61935243-61936043 transcript_region:SL2.40ch03:61935243..61936043+ functional_description:"Receptor serine/threonine kinase (AHRD V1 ***- Q9FF31_ARATH)"; NbS00056399g0005.1 protein AED:0.25 eAED:0.25 QI:174|1|1|1|0.5|0.42|7|468|253; (*GB) gi|62867580|emb|CAI84655.1| (e_value=8e-84) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT1G76940.1 (e_value=6e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28902707-28904085 REVERSE LENGTH=233;; (*ITAG) Solyc04g071050.2.1 (e_value=9e-85) genomic_reference:SL2.40ch04 gene_region:55538641-55541050 transcript_region:SL2.40ch04:55538641..55541050+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 ***- Q8H0P8_MEDTR); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00000293g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.87|0.66|1|1|1|9|0|478; (*GB) gi|350540116|ref|NP_001234647.1| (e_value=0.0) AP2 transcription factor SlAP2d [Solanum lycopersicum];; (*SWP) sp|Q9SK03|RAP27_ARATH (e_value=2e-95) Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2;; (*TAIR) AT2G28550.1 (e_value=1e-96) | Symbols: RAP2.7, TOE1 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=449;; (*ITAG) Solyc11g072600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52857365-52860247 transcript_region:SL2.40ch11:52857365..52860247- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g79700 (AHRD V1 *--- AP2L3_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00022070g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.75|0.6|5|0|218; (*GB) gi|255553795|ref|XP_002517938.1| (e_value=1e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20740.1 (e_value=5e-97) | Symbols: | Tetraspanin family protein | chr2:8935788-8937292 FORWARD LENGTH=221;; (*ITAG) Solyc07g054160.2.1 (e_value=2e-138) genomic_reference:SL2.40ch07 gene_region:59843151-59846915 transcript_region:SL2.40ch07:59843151..59846915+ go_terms:GO:0016021 functional_description:"Senescence-associated protein-like (ISS) (AHRD V1 ***- Q00X72_OSTTA); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00022070g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|112806954|dbj|BAF03073.1| (e_value=2e-26) 4-coumarate:coenzyme A ligase [Solanum melongena];; (*SWP) sp|O24145|4CL1_TOBAC (e_value=2e-26) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*TAIR) AT1G51680.1 (e_value=3e-18) | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159007-19161464 REVERSE LENGTH=561;; (*ITAG) Solyc03g117870.2.1 (e_value=1e-27) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00022070g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022070g0007.1 protein AED:0.20 eAED:0.45 QI:0|0|0|1|0|0|2|0|71; (*ITAG) Solyc00g316530.1.1 (e_value=4e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:21609206-21609442 transcript_region:SL2.40ch00:21609206..21609442+ go_terms:GO:0005524 functional_description:"Unknown Protein (AHRD V1)"; GO:0005524 NbS00014266g0010.1 protein AED:0.28 eAED:0.28 QI:702|1|0.66|1|0.8|0.66|6|240|99; (*GB) gi|302759084|ref|XP_002962965.1| (e_value=5e-18) hypothetical protein SELMODRAFT_78692 [Selaginella moellendorffii];; (*SWP) sp|Q9SEX2|KTNA1_ARATH (e_value=4e-18) Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1;; (*TAIR) AT1G80350.1 (e_value=3e-19) | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523;; (*ITAG) Solyc12g040520.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:39619675-39623965 transcript_region:SL2.40ch12:39619675..39623965- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- B6TID9_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00014266g0009.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.66|0|0|3|0|575; (*GB) gi|147846225|emb|CAN83754.1| (e_value=8e-86) hypothetical protein VITISV_032967 [Vitis vinifera];; (*SWP) sp|Q9LRR5|DRL21_ARATH (e_value=1e-44) Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1;; (*TAIR) AT3G14460.1 (e_value=8e-46) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc10g085460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00019924g0001.1 protein AED:0.34 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|202; (*GB) gi|224088689|ref|XP_002308514.1| (e_value=9e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72510.2 (e_value=7e-18) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc08g061270.1.1 (e_value=3e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:45656396-45656746 transcript_region:SL2.40ch08:45656396..45656746- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00029851g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|1|1|4|204|185; (*GB) gi|255582700|ref|XP_002532128.1| (e_value=5e-107) Glucose-6-phosphate/phosphate translocator 1, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=3e-102) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=2e-103) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079910.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60693789-60698023 transcript_region:SL2.40ch10:60693789..60698023+ functional_description:"Solute carrier family 35 member E1 (AHRD V1 **-- B7ZTJ7_XENTR); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00000426g0009.1 protein AED:0.16 eAED:0.16 QI:576|1|0.83|1|0.6|0.33|6|0|268; (*GB) gi|365818553|gb|AEX00365.1| (e_value=6e-111) IAA26 [Solanum lycopersicum];; (*SWP) sp|Q8LAL2|IAA26_ARATH (e_value=4e-72) Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2;; (*TAIR) AT3G16500.1 (e_value=3e-73) | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269;; (*ITAG) Solyc03g121060.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:63350693-63353201 transcript_region:SL2.40ch03:63350693..63353201+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00000426g0010.1 protein AED:0.18 eAED:0.20 QI:163|0.8|0.81|1|0.7|0.63|11|57|523; (*GB) gi|30961939|gb|AAP40021.1| (e_value=0.0) hexokinase [Nicotiana benthamiana];; (*SWP) sp|Q9SEK2|HXK1_TOBAC (e_value=0.0) Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1;; (*TAIR) AT2G19860.1 (e_value=0.0) | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570818-8573762 FORWARD LENGTH=502;; (*ITAG) Solyc03g121070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63353339-63358640 transcript_region:SL2.40ch03:63353339..63358640- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q8H0Q2_SOLLC); contains Interpro domain(s) IPR019807 Hexokinase, conserved site IPR001312 Hexokinase "; GO:0004340 NbS00036058g0004.1 protein AED:0.06 eAED:0.12 QI:0|0.16|0.14|0.85|0.5|0.57|7|261|461; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-27) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=9e-29) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=5e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00015255g0011.1 protein AED:0.12 eAED:0.16 QI:0|0.75|0.55|1|0.75|0.55|9|0|560; (*GB) gi|255561130|ref|XP_002521577.1| (e_value=9e-172) somatic embryogenesis receptor kinase, putative [Ricinus communis];; (*SWP) sp|Q8GX23|PERK5_ARATH (e_value=5e-164) Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1;; (*TAIR) AT4G34440.1 (e_value=3e-165) | Symbols: | Protein kinase superfamily protein | chr4:16466008-16468748 FORWARD LENGTH=670;; (*ITAG) Solyc02g085430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42911365-42915208 transcript_region:SL2.40ch02:42911365..42915208- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00015255g0010.1 protein AED:0.28 eAED:0.29 QI:14|0.25|0|1|0.25|0.4|5|0|413; (*GB) gi|9858770|gb|AAG01117.1|AF273333_2 (e_value=2e-175) BAC19.2 [Solanum lycopersicum];; (*SWP) sp|Q9FGY4|FB341_ARATH (e_value=7e-15) F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1;; (*TAIR) AT5G49610.1 (e_value=5e-16) | Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359;; (*ITAG) Solyc01g097610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80157372-80158656 transcript_region:SL2.40ch01:80157372..80158656+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00015255g0012.1 protein AED:0.60 eAED:0.60 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|153799750|gb|ABS50606.1| (e_value=3e-68) cytochrome c biogenesis orf203 [Arabidopsis thaliana];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=4e-63) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=2e-70) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=3e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00041146g0008.1 protein AED:0.24 eAED:0.24 QI:518|0.75|0.8|1|0.5|0.4|5|195|334; (*GB) gi|11133831|sp|O04856.1|PP11_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP1 isozyme 1;; (*SWP) sp|O04856|PP11_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1;; (*TAIR) AT2G39840.1 (e_value=0.0) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g005800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:831375-835231 transcript_region:SL2.40ch06:831375..835231- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q9SPE2_MALDO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00041146g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|236; (*GB) gi|38454182|gb|AAR20785.1| (e_value=1e-28) At2g07674 [Arabidopsis thaliana];; (*SWP) sp|P92535|M1010_ARATH (e_value=7e-25) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*TAIR) AT2G07674.1 (e_value=1e-31) | Symbols: | Unknown conserved protein | chr2:3269151-3269906 FORWARD LENGTH=251;; (*ITAG) Solyc11g056330.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00041146g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|190; (*GB) gi|46576003|gb|AAT01364.1| (e_value=1e-30) unknown protein [Oryza sativa Japonica Group];; (*SWP) sp|Q39950|NLTP_HELAN (e_value=3e-26) Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=7e-22) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc06g005770.1.1 (e_value=6e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:808170-808529 transcript_region:SL2.40ch06:808170..808529+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A5JUZ8_SESIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00050054g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|4|93|564; (*GB) gi|296080939|emb|CBI18661.3| (e_value=3e-165) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G31920.1 (e_value=4e-87) | Symbols: | Plant protein of unknown function (DUF936) | chr2:13574053-13576367 REVERSE LENGTH=585;; (*ITAG) Solyc01g081640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73342271-73346170 transcript_region:SL2.40ch01:73342271..73346170- functional_description:"Legume lectin beta domain (AHRD V1 ***- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00050054g0008.1 protein AED:0.03 eAED:0.03 QI:71|0.5|0.66|1|0.5|0.33|3|58|545; (*GB) gi|225450265|ref|XP_002269745.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242579 [Vitis vinifera];; (*TAIR) AT2G44260.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF946) | chr2:18295988-18297739 FORWARD LENGTH=553;; (*ITAG) Solyc01g081620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73325183-73327400 transcript_region:SL2.40ch01:73325183..73327400+ functional_description:"Vacuolar sorting protein (AHRD V1 *--- C6HJD3_AJECH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00050054g0013.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|0|0.5|2|0|230; (*GB) gi|224121098|ref|XP_002330903.1| (e_value=6e-26) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g081630.2.1 (e_value=8e-79) genomic_reference:SL2.40ch01 gene_region:73337518-73342163 transcript_region:SL2.40ch01:73337518..73342163+ functional_description:"Auxin-regulated protein (AHRD V1 *-*- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00050054g0014.1 protein AED:0.74 eAED:0.80 QI:0|0|0|0.5|0|0.25|4|0|106; (*GB) gi|147858021|emb|CAN82512.1| (e_value=1e-51) hypothetical protein VITISV_002153 [Vitis vinifera];; (*TAIR) AT1G05577.1 (e_value=4e-49) | Symbols: | Domain of unknown function (DUF966) | chr1:1662643-1664288 REVERSE LENGTH=372;; (*ITAG) Solyc06g075690.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00023064g0002.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|0.83|6|0|419; (*GB) gi|359475985|ref|XP_002281998.2| (e_value=7e-87) PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera];; (*TAIR) AT2G26280.1 (e_value=9e-65) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=3e-144) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbS00047073g0011.1 protein AED:0.11 eAED:0.11 QI:51|0.62|0.33|0.88|0.25|0.33|9|136|471; (*GB) gi|359476871|ref|XP_002269279.2| (e_value=0.0) PREDICTED: abscisic acid 8'-hydroxylase 3-like [Vitis vinifera];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=6e-50) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT1G19630.1 (e_value=2e-111) | Symbols: CYP722A1 | cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476;; (*ITAG) Solyc02g084930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42556487-42559673 transcript_region:SL2.40ch02:42556487..42559673+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00047073g0009.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|131; (*GB) gi|297742599|emb|CBI34748.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23030.1 (e_value=2e-20) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc08g080310.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60786990-60788474 transcript_region:SL2.40ch08:60786990..60788474+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00047073g0014.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.33|3|0|494; (*GB) gi|224094851|ref|XP_002310264.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=9e-30) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT2G18193.1 (e_value=5e-155) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:7917621-7919184 REVERSE LENGTH=495;; (*ITAG) Solyc02g084900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42534523-42536479 transcript_region:SL2.40ch02:42534523..42536479- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_BACPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00047073g0005.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|356540781|ref|XP_003538863.1| (e_value=7e-14) PREDICTED: uncharacterized protein LOC100796373 [Glycine max];; (*ITAG) Solyc02g084940.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:42559749-42560069 transcript_region:SL2.40ch02:42559749..42560069- functional_description:"Unknown Protein (AHRD V1)"; NbS00007899g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|356530027|ref|XP_003533586.1| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100815316 [Glycine max];; (*TAIR) AT5G16520.1 (e_value=4e-44) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=9e-78) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbS00007899g0006.1 protein AED:0.06 eAED:0.06 QI:239|1|1|1|0.5|0|3|0|631; (*GB) gi|224144920|ref|XP_002325462.1| (e_value=7e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G36100.1 (e_value=1e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.3); Has 57 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:14191711-14193654 REVERSE LENGTH=295;; (*ITAG) Solyc04g051280.2.1 (e_value=3e-162) genomic_reference:SL2.40ch04 gene_region:49423099-49426805 transcript_region:SL2.40ch04:49423099..49426805- functional_description:"F16G16.9 protein (Fragment) (AHRD V1 *-*- Q9SS51_ARATH)"; NbS00016889g0005.1 protein AED:0.23 eAED:0.23 QI:129|0.90|0.94|1|0.87|0.85|34|0|1390; (*GB) gi|224132094|ref|XP_002321254.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8QHA5|DNA2L_XENLA (e_value=1e-158) DNA2-like helicase OS=Xenopus laevis GN=dna2 PE=1 SV=1;; (*TAIR) AT1G08840.2 (e_value=0.0) | Symbols: emb2411 | DNA replication helicase, putative | chr1:2829579-2838369 REVERSE LENGTH=1315;; (*ITAG) Solyc01g088380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74904201-74922866 transcript_region:SL2.40ch01:74904201..74922866- go_terms:GO:0017108 functional_description:"DNA helicase (AHRD V1 ***- A6ZT72_YEAS7); contains Interpro domain(s) IPR014808 DNA replication factor Dna2 "; GO:0017108 NbS00039796g0001.1 protein AED:0.87 eAED:0.89 QI:0|-1|0|1|-1|1|1|0|223; (*ITAG) Solyc09g059390.2.1 (e_value=2e-18) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00034122g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.88|0.7|0.9|0.88|0.9|10|645|338; (*GB) gi|296089247|emb|CBI39019.3| (e_value=1e-95) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G19490.2 (e_value=4e-80) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034;; (*ITAG) Solyc02g069650.1.1 (e_value=4e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34061061-34081109 transcript_region:SL2.40ch02:34061061..34081109- go_terms:GO:0042147 functional_description:"Vacuolar sorting-associated protein (AHRD V1 *-*- C0NTA8_AJECG); contains Interpro domain(s) IPR012501 Vps54-like "; GO:0042147 NbS00012306g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|165 NbS00010045g0018.1 protein AED:0.00 eAED:0.00 QI:92|1|1|1|0.5|0.66|3|142|86; (*GB) gi|224131164|ref|XP_002328470.1| (e_value=4e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT4G33467.2 (e_value=1e-11) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16101691-16102084 REVERSE LENGTH=101;; (*ITAG) Solyc11g005930.1.1 (e_value=6e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:751368-752840 transcript_region:SL2.40ch11:751368..752840+ functional_description:"ST63-2 (AHRD V1 ***- B4YYB2_THEHA)"; NbS00010045g0020.1 protein AED:0.26 eAED:0.28 QI:0|0.33|0|0.75|1|1|4|0|83; (*GB) gi|224131164|ref|XP_002328470.1| (e_value=5e-25) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g005930.1.1 (e_value=6e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:751368-752840 transcript_region:SL2.40ch11:751368..752840+ functional_description:"ST63-2 (AHRD V1 ***- B4YYB2_THEHA)"; NbS00010045g0023.1 protein AED:0.30 eAED:0.34 QI:0|1|0|1|0|0|2|0|839; (*GB) gi|296085490|emb|CBI29222.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940A6|PP325_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2;; (*TAIR) AT4G19440.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10602006-10604483 REVERSE LENGTH=825;; (*ITAG) Solyc11g005940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:757823-760342 transcript_region:SL2.40ch11:757823..760342- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL1_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010045g0022.1 protein AED:0.58 eAED:0.58 QI:34|0.4|0.33|0.83|0.6|0.66|6|0|136 NbS00030173g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.63|0.94|0.61|0.68|19|0|1873; (*GB) gi|296089008|emb|CBI38711.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0P5W1|VPS8_MOUSE (e_value=4e-72) Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus GN=Vps8 PE=2 SV=1;; (*TAIR) AT4G00800.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:337114-345581 REVERSE LENGTH=1913;; (*ITAG) Solyc05g044610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:56327245-56343343 transcript_region:SL2.40ch05:56327245..56343343- go_terms:GO:0006508,GO:0008270,GO:0005488 functional_description:"Vacuolar protein sorting-associated protein 8 (AHRD V1 *--- D0NE39_PHYIN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0006508,GO:0008270,GO:0005488 NbS00030123g0005.1 protein AED:0.24 eAED:0.24 QI:197|1|1|1|0.8|0.66|6|376|303; (*GB) gi|225427254|ref|XP_002278688.1| (e_value=2e-154) PREDICTED: eyes absent homolog 2 [Vitis vinifera];; (*SWP) sp|O00167|EYA2_HUMAN (e_value=4e-43) Eyes absent homolog 2 OS=Homo sapiens GN=EYA2 PE=1 SV=2;; (*TAIR) AT2G35320.1 (e_value=4e-139) | Symbols: ATEYA, EYA | EYES ABSENT homolog | chr2:14867074-14868387 REVERSE LENGTH=307;; (*ITAG) Solyc08g077090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58184359-58189670 transcript_region:SL2.40ch08:58184359..58189670- go_terms:GO:0030946 functional_description:"Eyes absent homolog 3 (AHRD V1 ***- A0JME1_DANRE); contains Interpro domain(s) IPR006545 EYA "; GO:0030946 NbS00035967g0008.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0.2|0.16|6|0|354; (*GB) gi|6635236|dbj|BAA88636.1| (e_value=2e-80) elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum];; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=9e-21) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT3G28890.2 (e_value=1e-27) | Symbols: AtRLP43, RLP43 | receptor like protein 43 | chr3:10896706-10898841 REVERSE LENGTH=711;; (*ITAG) Solyc06g008300.2.1 (e_value=4e-74) genomic_reference:SL2.40ch06 gene_region:2161344-2164746 transcript_region:SL2.40ch06:2161344..2164746- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00015833g0008.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.66|0.5|0.33|3|0|96 NbS00015833g0007.1 protein AED:0.36 eAED:0.38 QI:30|1|0.5|1|0.33|0.75|4|0|125; (*GB) gi|359492513|ref|XP_002283694.2| (e_value=1e-43) PREDICTED: MADS-box transcription factor 27 [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=4e-35) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.1 (e_value=9e-30) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc12g088090.1.1 (e_value=6e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62014329-62019387 transcript_region:SL2.40ch12:62014329..62019387+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 *-*- Q9M2M4_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00015833g0002.1 protein AED:0.41 eAED:0.51 QI:0|0|0|0.33|1|1|6|0|297; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=4e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015833g0006.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|222628999|gb|EEE61131.1| (e_value=3e-34) hypothetical protein OsJ_15063 [Oryza sativa Japonica Group];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=7e-32) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.1 (e_value=3e-32) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc12g088080.1.1 (e_value=1e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62008534-62008827 transcript_region:SL2.40ch12:62008534..62008827+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00038096g0001.1 protein AED:0.11 eAED:0.11 QI:146|0.66|1|1|0.66|0.75|4|191|392; (*GB) gi|356560736|ref|XP_003548644.1| (e_value=5e-142) PREDICTED: probable polygalacturonase-like [Glycine max];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=7e-141) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=8e-131) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=2e-168) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00038096g0022.1 protein AED:0.11 eAED:0.11 QI:163|0.84|1|1|0.84|0.92|14|597|419; (*GB) gi|225454328|ref|XP_002277525.1| (e_value=0.0) PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera];; (*SWP) sp|Q8RX88|FACE1_ARATH (e_value=0.0) CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1;; (*TAIR) AT4G01320.1 (e_value=0.0) | Symbols: ATSTE24, STE24 | Peptidase family M48 family protein | chr4:545905-549002 FORWARD LENGTH=424;; (*ITAG) Solyc01g094930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78090601-78100660 transcript_region:SL2.40ch01:78090601..78100660+ go_terms:GO:0016020 functional_description:"CAAX prenyl protease 1 (AHRD V1 ***- B4FBL0_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00038096g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.83|1|1|1|6|391|401; (*GB) gi|350539489|ref|NP_001234660.1| (e_value=0.0) mitogen-activated protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|Q40353|MMK2_MEDSA (e_value=0.0) Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1;; (*TAIR) AT4G01370.1 (e_value=0.0) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc05g049970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58964608-58969530 transcript_region:SL2.40ch05:58964608..58969530+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0016908 NbS00038096g0020.1 protein AED:0.39 eAED:0.39 QI:235|0.66|0.28|1|0.5|0.42|7|0|303; (*GB) gi|224128029|ref|XP_002320223.1| (e_value=9e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5M757|ZDH15_ARATH (e_value=4e-74) Probable S-acyltransferase At4g00840 OS=Arabidopsis thaliana GN=At4g00840 PE=2 SV=1;; (*TAIR) AT4G00840.1 (e_value=3e-75) | Symbols: | DHHC-type zinc finger family protein | chr4:355483-357105 REVERSE LENGTH=291;; (*ITAG) Solyc05g047640.2.1 (e_value=3e-77) genomic_reference:SL2.40ch05 gene_region:58268713-58278495 transcript_region:SL2.40ch05:58268713..58278495- go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00038096g0005.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|537 NbS00014754g0019.1 protein AED:0.22 eAED:0.22 QI:29|0.90|0.83|1|0.81|0.91|12|0|552; (*GB) gi|225457921|ref|XP_002272757.1| (e_value=0.0) PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q3TZZ7|ESYT2_MOUSE (e_value=1e-26) Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1;; (*TAIR) AT2G20990.1 (e_value=0.0) | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541;; (*ITAG) Solyc12g089330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62902074-62906234 transcript_region:SL2.40ch12:62902074..62906234- functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00014754g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.33|1|1|3|0|103; (*GB) gi|224085870|ref|XP_002307720.1| (e_value=5e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93X17|SNAK2_SOLTU (e_value=1e-32) Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1;; (*TAIR) AT1G75750.1 (e_value=4e-30) | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28441813-28442284 REVERSE LENGTH=98;; (*ITAG) Solyc12g089300.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62878510-62879946 transcript_region:SL2.40ch12:62878510..62879946- functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6TLZ8_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00014754g0020.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|0.5|0.66|3|0|245; (*GB) gi|221220532|gb|ACM08927.1| (e_value=4e-116) Tubulin beta-2C chain [Salmo salar];; (*SWP) sp|P12411|TBB1_ARATH (e_value=5e-104) Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1;; (*TAIR) AT1G75780.1 (e_value=4e-105) | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451378-28453602 REVERSE LENGTH=447;; (*ITAG) Solyc12g089310.1.1 (e_value=6e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62884778-62887198 transcript_region:SL2.40ch12:62884778..62887198- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- D7KT68_ARALY); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00014754g0018.1 protein AED:0.30 eAED:0.31 QI:0|0.8|0.16|1|0.8|0.83|6|0|205; (*GB) gi|255539002|ref|XP_002510566.1| (e_value=2e-127) vacuolar sorting protein, putative [Ricinus communis];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=6e-122) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=4e-123) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc12g089340.1.1 (e_value=1e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62908141-62919928 transcript_region:SL2.40ch12:62908141..62919928- functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; NbS00014754g0021.1 protein AED:0.32 eAED:0.35 QI:0|0.57|0.5|1|0.57|0.37|8|0|338; (*GB) gi|225458007|ref|XP_002276474.1| (e_value=1e-106) PREDICTED: HVA22-like protein i [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=3e-89) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.1 (e_value=2e-90) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015573-17016969 FORWARD LENGTH=296;; (*ITAG) Solyc12g089290.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62852577-62854975 transcript_region:SL2.40ch12:62852577..62854975+ functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 *--- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00018670g0001.1 protein AED:0.04 eAED:0.04 QI:60|1|0.5|1|0|0|2|0|25 NbS00034161g0010.1 protein AED:0.25 eAED:0.25 QI:238|0.87|0.77|0.88|0.75|0.88|9|0|295; (*GB) gi|225444207|ref|XP_002276285.1| (e_value=7e-148) PREDICTED: gamma-soluble NSF attachment protein [Vitis vinifera];; (*SWP) sp|Q9SPE5|SNAG_ARATH (e_value=1e-135) Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1;; (*TAIR) AT4G20410.1 (e_value=9e-137) | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF attachment protein | chr4:11014099-11016454 REVERSE LENGTH=291;; (*ITAG) Solyc02g069640.2.1 (e_value=7e-173) genomic_reference:SL2.40ch02 gene_region:34051316-34059064 transcript_region:SL2.40ch02:34051316..34059064- go_terms:GO:0005483 functional_description:"Gamma-soluble NSF attachment protein (AHRD V1 **** C1BLH4_OSMMO); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00034161g0009.1 protein AED:0.10 eAED:0.10 QI:397|1|0.9|1|0.88|0.9|10|0|885; (*GB) gi|296089234|emb|CBI39006.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-79) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G20430.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr4:11017656-11021105 REVERSE LENGTH=856;; (*ITAG) Solyc02g069630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34043531-34051034 transcript_region:SL2.40ch02:34043531..34051034+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00042740g0009.1 protein AED:0.41 eAED:0.41 QI:43|0.66|0|0.75|1|0.75|4|167|17 NbS00042740g0010.1 protein AED:0.14 eAED:0.16 QI:9|0.76|0.62|1|0.84|0.88|27|0|1335; (*GB) gi|297736213|emb|CBI24851.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0W2S0|K0664_CULQU (e_value=3e-119) Protein KIAA0664 homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1;; (*TAIR) AT3G52140.1 (e_value=0.0) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr3:19333232-19341295 FORWARD LENGTH=1403;; (*ITAG) Solyc01g086750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73460546-73476879 transcript_region:SL2.40ch01:73460546..73476879- go_terms:GO:0003743 functional_description:"Protein TIF31 homolog (AHRD V1 ***- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0003743 NbS00033516g0001.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|86 NbS00011851g0009.1 protein AED:0.14 eAED:0.14 QI:351|0.72|0.83|1|0.72|0.75|12|313|478; (*GB) gi|255549968|ref|XP_002516035.1| (e_value=5e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25737.1 (e_value=5e-98) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc12g044230.1.1 (e_value=2e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44578159-44581444 transcript_region:SL2.40ch12:44578159..44581444+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00011851g0008.1 protein AED:0.28 eAED:0.28 QI:164|1|1|1|1|1|7|285|206; (*GB) gi|623588|gb|AAA74118.1| (e_value=1e-149) putative [Nicotiana tabacum];; (*SWP) sp|O24461|RAB7_PRUAR (e_value=3e-145) Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT1G52280.1 (e_value=3e-142) | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D | chr1:19468150-19469449 REVERSE LENGTH=206;; (*ITAG) Solyc03g120750.2.1 (e_value=6e-149) genomic_reference:SL2.40ch03 gene_region:63080116-63084324 transcript_region:SL2.40ch03:63080116..63084324- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00011851g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|181; (*GB) gi|224059094|ref|XP_002299712.1| (e_value=7e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C4M5|GYAR_THELI (e_value=3e-31) Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1;; (*TAIR) AT1G79870.1 (e_value=1e-80) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc12g044250.1.1 (e_value=4e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44591173-44593253 transcript_region:SL2.40ch12:44591173..44593253- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **-- GHRB_ERWT9); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00021517g0003.1 protein AED:0.31 eAED:0.32 QI:3|0.71|0.75|0.87|1|1|8|0|520; (*GB) gi|356511017|ref|XP_003524228.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100776555 [Glycine max];; (*ITAG) Solyc01g073870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00055711g0004.1 protein AED:0.10 eAED:0.10 QI:293|0.64|0.66|1|0.57|0.6|15|285|698; (*GB) gi|308550956|gb|ADO34792.1| (e_value=0.0) beta-galactosidase STBG7 [Solanum lycopersicum];; (*SWP) sp|Q9FN08|BGA10_ARATH (e_value=0.0) Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1;; (*TAIR) AT5G63810.1 (e_value=0.0) | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25537242-25541315 FORWARD LENGTH=741;; (*ITAG) Solyc03g019890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6781354-6790955 transcript_region:SL2.40ch03:6781354..6790955+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- A2JGX1_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00015693g0001.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|226 NbS00022801g0006.1 protein AED:0.38 eAED:0.38 QI:119|1|1|1|0.8|1|6|581|152; (*GB) gi|224105969|ref|XP_002313998.1| (e_value=4e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0V8G2|GABP2_BOVIN (e_value=3e-20) GA-binding protein subunit beta-2 OS=Bos taurus GN=GABPB2 PE=2 SV=2;; (*TAIR) AT5G12320.1 (e_value=1e-62) | Symbols: | ankyrin repeat family protein | chr5:3982762-3983899 FORWARD LENGTH=144;; (*ITAG) Solyc04g008580.2.1 (e_value=7e-74) genomic_reference:SL2.40ch04 gene_region:2185454-2191242 transcript_region:SL2.40ch04:2185454..2191242- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain protein (AHRD V1 **-- C0R391_WOLWR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00022801g0003.1 protein AED:0.23 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|416; (*GB) gi|297738294|emb|CBI27495.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66GP4|PP379_ARATH (e_value=3e-162) Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1;; (*TAIR) AT5G13770.1 (e_value=2e-163) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:4445461-4447290 FORWARD LENGTH=609;; (*ITAG) Solyc04g008570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2182236-2184631 transcript_region:SL2.40ch04:2182236..2184631+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M5W2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057163g0007.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0|1|0.25|0.4|5|0|211; (*GB) gi|225462503|ref|XP_002268794.1| (e_value=5e-87) PREDICTED: protein SRG1-like [Vitis vinifera];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=5e-57) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT4G25310.1 (e_value=6e-63) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12949753-12951138 FORWARD LENGTH=353;; (*ITAG) Solyc02g071470.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:35474136-35476049 transcript_region:SL2.40ch02:35474136..35476049- go_terms:GO:0045544 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-* ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00057163g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|0|0.5|2|0|92; (*GB) gi|225453297|ref|XP_002268288.1| (e_value=5e-24) PREDICTED: protein SRG1 [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=3e-18) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G78550.1 (e_value=7e-20) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29545031-29546360 REVERSE LENGTH=356;; (*ITAG) Solyc02g071410.2.1 (e_value=9e-45) genomic_reference:SL2.40ch02 gene_region:35452522-35455262 transcript_region:SL2.40ch02:35452522..35455262- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00045736g0010.1 protein AED:0.30 eAED:0.31 QI:274|0.75|0.64|1|0.62|0.47|17|0|560; (*GB) gi|225439725|ref|XP_002273550.1| (e_value=4e-135) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=8e-91) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT5G02540.1 (e_value=3e-119) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:568609-570720 FORWARD LENGTH=331;; (*ITAG) Solyc09g010510.2.1 (e_value=9e-167) genomic_reference:SL2.40ch09 gene_region:3883077-3887813 transcript_region:SL2.40ch09:3883077..3887813- go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7LJU7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00045736g0009.1 protein AED:0.34 eAED:0.34 QI:179|0.8|0.66|1|0.8|0.66|6|0|141; (*GB) gi|4960150|gb|AAD34613.1|AF153277_1 (e_value=1e-58) DNA-directed RNA polymerase IIa [Nicotiana tabacum];; (*SWP) sp|O88828|RPAB2_RAT (e_value=6e-36) DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f PE=1 SV=1;; (*TAIR) AT5G51940.1 (e_value=7e-56) | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144;; (*ITAG) Solyc09g010500.2.1 (e_value=7e-59) genomic_reference:SL2.40ch09 gene_region:3879837-3882611 transcript_region:SL2.40ch09:3879837..3882611+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit-like protein (AHRD V1 **** Q9FJ98_ARATH); contains Interpro domain(s) IPR006111 DNA-directed RNA polymerase, 14 to 18 kDa subunit "; GO:0003899 NbS00054564g0008.1 protein AED:0.07 eAED:0.07 QI:122|0.87|0.88|1|1|1|9|0|969; (*GB) gi|115610|sp|P27154.1|CAPP_TOBAC (e_value=0.0) RecName: Full=Phosphoenolpyruvate carboxylase; Short=PEPC; Short=PEPCase;; (*SWP) sp|P27154|CAPP_TOBAC (e_value=0.0) Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1;; (*TAIR) AT3G14940.1 (e_value=0.0) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968;; (*ITAG) Solyc10g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1686062-1694134 transcript_region:SL2.40ch10:1686062..1694134- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 ***- A6YM32_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00054564g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|4|0|485; (*GB) gi|359483290|ref|XP_003632935.1| (e_value=5e-129) PREDICTED: mitochondrial chaperone BCS1-like [Vitis vinifera];; (*SWP) sp|Q94IB1|RS2_ORYSJ (e_value=1e-41) Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1;; (*TAIR) AT3G50930.1 (e_value=2e-111) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc10g007280.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1683212-1684934 transcript_region:SL2.40ch10:1683212..1684934- go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00019717g0011.1 protein AED:0.17 eAED:0.17 QI:633|0.75|0.69|1|0.5|0.53|13|357|521; (*GB) gi|147818235|emb|CAN73549.1| (e_value=5e-129) hypothetical protein VITISV_038183 [Vitis vinifera];; (*SWP) sp|Q9LEZ3|BIM1_ARATH (e_value=2e-70) Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2;; (*TAIR) AT5G08130.4 (e_value=2e-71) | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2609571 REVERSE LENGTH=529;; (*ITAG) Solyc06g069370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39510571-39515377 transcript_region:SL2.40ch06:39510571..39515377+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor protein (AHRD V1 *-** Q4H2R4_CIOIN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00019717g0010.1 protein AED:0.25 eAED:0.25 QI:356|1|0.66|1|0.75|0.77|9|0|529; (*GB) gi|255547081|ref|XP_002514598.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-83) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G15740.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc03g114730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58687413-58692533 transcript_region:SL2.40ch03:58687413..58692533- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00045664g0003.1 protein AED:0.26 eAED:0.26 QI:233|1|1|1|1|1|2|281|85 NbS00016883g0004.1 protein AED:0.03 eAED:0.03 QI:272|1|1|1|1|1|3|244|329; (*GB) gi|21389174|gb|AAM50521.1|AF510215_1 (e_value=4e-150) nam-like protein 18 [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=7e-121) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=6e-122) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc03g115850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59503502-59505060 transcript_region:SL2.40ch03:59503502..59505060- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00059062g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|191; (*GB) gi|297742599|emb|CBI34748.3| (e_value=1e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23030.1 (e_value=4e-46) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc08g080310.1.1 (e_value=2e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60786990-60788474 transcript_region:SL2.40ch08:60786990..60788474+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00030739g0007.1 protein AED:0.01 eAED:0.07 QI:0|0|0|1|1|1|2|0|278; (*GB) gi|170660047|gb|ACB28472.1| (e_value=1e-19) polyprotein [Ananas comosus];; (*ITAG) Solyc03g098530.1.1 (e_value=1e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:54265283-54266270 transcript_region:SL2.40ch03:54265283..54266270+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030739g0006.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.4|1|1|5|0|348; (*GB) gi|356562830|ref|XP_003549671.1| (e_value=1e-41) PREDICTED: protein SET-like [Glycine max];; (*SWP) sp|Q01105|SET_HUMAN (e_value=2e-19) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G74560.1 (e_value=1e-39) | Symbols: NRP1 | NAP1-related protein 1 | chr1:28017815-28019900 REVERSE LENGTH=256;; (*ITAG) Solyc03g116170.2.1 (e_value=7e-50) genomic_reference:SL2.40ch03 gene_region:59709189-59714932 transcript_region:SL2.40ch03:59709189..59714932+ go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00034487g0002.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|177; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-22) hypothetical protein [Nicotiana tabacum]; NbS00058983g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|225452813|ref|XP_002283533.1| (e_value=6e-77) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=3e-50) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT3G28920.1 (e_value=3e-65) | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34 | chr3:10940598-10941536 REVERSE LENGTH=312;; (*ITAG) Solyc02g067320.1.1 (e_value=2e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32098473-32099468 transcript_region:SL2.40ch02:32098473..32099468- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00058983g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|350535334|ref|NP_001234189.1| (e_value=4e-34) mini zinc finger protein [Solanum lycopersicum];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=1e-17) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT3G28917.1 (e_value=4e-28) | Symbols: MIF2 | mini zinc finger 2 | chr3:10925014-10925316 FORWARD LENGTH=100;; (*ITAG) Solyc02g087970.1.1 (e_value=8e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44783677-44783949 transcript_region:SL2.40ch02:44783677..44783949+ go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00056006g0003.1 protein AED:0.28 eAED:0.28 QI:0|0.44|0.7|1|0.66|0.6|10|197|396; (*GB) gi|156070775|gb|ABU45189.1| (e_value=7e-174) unknown [Capsicum frutescens];; (*SWP) sp|Q9CZT4|RPC5_MOUSE (e_value=4e-19) DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus GN=Polr3e PE=1 SV=2;; (*TAIR) AT5G49530.1 (e_value=1e-69) | Symbols: | SIN-like family protein | chr5:20100934-20104242 FORWARD LENGTH=689;; (*ITAG) Solyc08g078600.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59537321-59545380 transcript_region:SL2.40ch08:59537321..59545380- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit RPC5-like protein (AHRD V1 *-*- D0NBY8_PHYIN); contains Interpro domain(s) IPR006886 Sin-like protein conserved region "; GO:0005634 NbS00058812g0003.1 protein AED:0.05 eAED:0.11 QI:75|1|1|1|1|1|3|78|332; (*GB) gi|197322805|gb|ACH69153.1| (e_value=0.0) actin [Nicotiana tabacum];; (*SWP) sp|Q05214|ACT1_TOBAC (e_value=0.0) Actin OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc05g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63549262-63552429 transcript_region:SL2.40ch05:63549262..63552429- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00043680g0007.1 protein AED:0.03 eAED:0.03 QI:99|0.5|0.33|1|0.5|0.33|3|0|901; (*GB) gi|145308227|gb|ABP57378.1| (e_value=0.0) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc02g067010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31828637-31834655 transcript_region:SL2.40ch02:31828637..31834655- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00043680g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.87|0.88|1|1|1|9|0|468; (*GB) gi|350535933|ref|NP_001233965.1| (e_value=0.0) SNF1 protein [Solanum lycopersicum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.3 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512;; (*ITAG) Solyc02g067030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31839840-31851609 transcript_region:SL2.40ch02:31839840..31851609- go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase catalytic subunit alpha-2 (AHRD V1 **** D1LWW2_SACKO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00034147g0010.1 protein AED:0.36 eAED:0.36 QI:181|1|0.71|1|0.33|0.57|7|0|257; (*GB) gi|225427236|ref|XP_002280752.1| (e_value=1e-88) PREDICTED: uncharacterized protein LOC100254109 [Vitis vinifera];; (*TAIR) AT2G35360.1 (e_value=3e-70) | Symbols: | ubiquitin family protein | chr2:14889311-14890799 REVERSE LENGTH=225;; (*ITAG) Solyc08g007030.2.1 (e_value=6e-128) genomic_reference:SL2.40ch08 gene_region:1596900-1602409 transcript_region:SL2.40ch08:1596900..1602409- functional_description:"Ubiquitin family protein (AHRD V1 ***- D7LHV6_ARALY); contains Interpro domain(s) IPR019387 Domain of unknown function SAYSvFN "; NbS00034147g0004.1 protein AED:0.43 eAED:0.53 QI:0|0|0.5|1|1|1|2|116|104 NbS00034147g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|60; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=6e-26) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=2e-27) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=3e-24) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc11g008510.1.1 (e_value=5e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2684326-2686166 transcript_region:SL2.40ch11:2684326..2686166+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0005840 NbS00034147g0011.1 protein AED:0.23 eAED:0.23 QI:463|0.83|0.71|0.85|0.5|0.28|7|0|347; (*GB) gi|21105751|gb|AAM34774.1|AF509874_1 (e_value=2e-169) nam-like protein 11 [Petunia x hybrida];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=5e-56) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT4G17980.1 (e_value=1e-99) | Symbols: anac071, NAC071 | NAC domain containing protein 71 | chr4:9978850-9980038 REVERSE LENGTH=262;; (*ITAG) Solyc08g077110.2.1 (e_value=2e-173) genomic_reference:SL2.40ch08 gene_region:58200673-58202853 transcript_region:SL2.40ch08:58200673..58202853- go_terms:GO:0005515,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N2P7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0005515,GO:0003700 NbS00044333g0003.1 protein AED:0.41 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|193; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-27) hypothetical protein [Nicotiana tabacum]; NbS00044333g0010.1 protein AED:0.31 eAED:0.31 QI:211|0.88|0.7|1|0.77|0.6|10|0|395; (*GB) gi|224129900|ref|XP_002328831.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3E875|RGAP1_ARATH (e_value=0.0) Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2;; (*TAIR) AT5G61530.1 (e_value=0.0) | Symbols: | small G protein family protein / RhoGAP family protein | chr5:24742630-24744586 FORWARD LENGTH=376;; (*ITAG) Solyc03g093430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48160685-48165589 transcript_region:SL2.40ch03:48160685..48165589+ go_terms:GO:0005100 functional_description:"Rho GTPase activating protein 1 (AHRD V1 *-** Q568D8_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005100 NbS00044333g0009.1 protein AED:0.34 eAED:0.35 QI:0|0.71|0.75|1|0.85|0.87|8|27|407; (*GB) gi|359490081|ref|XP_003634027.1| (e_value=7e-179) PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3-like [Vitis vinifera];; (*SWP) sp|Q56W64|ASPG3_ARATH (e_value=1e-164) Probable isoaspartyl peptidase/L-asparaginase 3 OS=Arabidopsis thaliana GN=At5g61540 PE=2 SV=1;; (*TAIR) AT5G61540.1 (e_value=8e-166) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:24744994-24747142 FORWARD LENGTH=359;; (*ITAG) Solyc03g093440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48166952-48178089 transcript_region:SL2.40ch03:48166952..48178089+ go_terms:GO:0003948 functional_description:"N(4)-(Beta-n-acetylglucosaminyl)-l-asparaginase (AHRD V1 **** Q16VX6_AEDAE); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbS00012889g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.4|0.8|0.75|0.6|5|892|236; (*GB) gi|302143279|emb|CBI21840.3| (e_value=1e-53) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=1e-34) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.1 (e_value=1e-35) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926110-8927722 FORWARD LENGTH=490;; (*ITAG) Solyc07g054090.2.1 (e_value=1e-56) genomic_reference:SL2.40ch07 gene_region:59816862-59821512 transcript_region:SL2.40ch07:59816862..59821512- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012889g0003.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|3|0|102; (*ITAG) Solyc07g054090.2.1 (e_value=2e-15) genomic_reference:SL2.40ch07 gene_region:59816862-59821512 transcript_region:SL2.40ch07:59816862..59821512- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021472g0008.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|119; (*GB) gi|224139564|ref|XP_002323171.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|O23038|PME8_ARATH (e_value=6e-41) Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2;; (*TAIR) AT1G05310.1 (e_value=5e-42) | Symbols: | Pectin lyase-like superfamily protein | chr1:1550615-1552434 REVERSE LENGTH=393;; (*ITAG) Solyc07g043240.2.1 (e_value=1e-52) genomic_reference:SL2.40ch07 gene_region:54205379-54208245 transcript_region:SL2.40ch07:54205379..54208245- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S4Z6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00021472g0009.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|78; (*ITAG) Solyc12g038100.1.1 (e_value=6e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:34157356-34158093 transcript_region:SL2.40ch12:34157356..34158093+ functional_description:"Polyprotein (AHRD V1 *-*- Q94HW2_ARATH)"; NbS00003448g0009.1 protein AED:0.25 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|128 NbS00003448g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|367; (*GB) gi|225468885|ref|XP_002270044.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100251709 [Vitis vinifera];; (*TAIR) AT4G22190.1 (e_value=4e-52) | Symbols: | unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). | chr4:11742102-11743265 REVERSE LENGTH=387;; (*ITAG) Solyc02g081150.1.1 (e_value=3e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39789696-39790745 transcript_region:SL2.40ch02:39789696..39790745- functional_description:"Unknown Protein (AHRD V1)"; NbS00003448g0019.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.25|1|0.66|0.75|4|0|295; (*GB) gi|224115898|ref|XP_002317152.1| (e_value=2e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=8e-75) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=5e-107) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc02g081140.2.1 (e_value=1e-168) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00003448g0020.1 protein AED:0.22 eAED:0.22 QI:108|0.85|0.8|1|0.85|0.93|15|42|529; (*GB) gi|2507174|sp|P21343.2|PFPB_SOLTU (e_value=0.0) RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase;; (*SWP) sp|P21343|PFPB_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G12000.1 (e_value=0.0) | Symbols: | Phosphofructokinase family protein | chr1:4050159-4053727 REVERSE LENGTH=566;; (*ITAG) Solyc02g081160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39802521-39809198 transcript_region:SL2.40ch02:39802521..39809198- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D1JTA2_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00033381g0004.1 protein AED:0.20 eAED:0.20 QI:224|0.71|0.75|1|0.85|0.75|8|0|637; (*GB) gi|21105732|gb|AAM34765.1|AF509865_1 (e_value=0.0) nam-like protein 2 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=6e-72) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G09330.4 (e_value=2e-79) | Symbols: VNI1 | NAC domain containing protein 82 | chr5:2892623-2894708 REVERSE LENGTH=489;; (*ITAG) Solyc11g005920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:743287-748004 transcript_region:SL2.40ch11:743287..748004+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HEK0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012928g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.83|1|0.8|0.83|6|348|240; (*GB) gi|445613|prf||1909359B (e_value=2e-137) ribosomal protein L7;; (*SWP) sp|P60040|RL72_ARATH (e_value=2e-133) 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1;; (*TAIR) AT2G01250.1 (e_value=2e-134) | Symbols: | Ribosomal protein L30/L7 family protein | chr2:132943-134264 REVERSE LENGTH=242;; (*ITAG) Solyc12g096220.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63577374-63583356 transcript_region:SL2.40ch12:63577374..63583356+ go_terms:GO:0005840,GO:0015934,GO:0005089 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7LR12_ARALY); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005840,GO:0015934,GO:0005089 NbS00048088g0007.1 protein AED:0.27 eAED:0.27 QI:213|0.57|0.5|0.87|0.85|1|8|0|422; (*GB) gi|2501647|sp|Q42967.1|DCUP_TOBAC (e_value=0.0) RecName: Full=Uroporphyrinogen decarboxylase, chloroplastic; Short=UPD; Short=URO-D; Flags: Precursor;; (*SWP) sp|Q42967|DCUP_TOBAC (e_value=0.0) Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1;; (*TAIR) AT2G40490.1 (e_value=0.0) | Symbols: HEME2 | Uroporphyrinogen decarboxylase | chr2:16912961-16914988 FORWARD LENGTH=394;; (*ITAG) Solyc06g048730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28105228-28112767 transcript_region:SL2.40ch06:28105228..28112767- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** C6TEE8_SOYBN); contains Interpro domain(s) IPR000257 Uroporphyrinogen decarboxylase (URO-D) "; GO:0004853,GO:0042803 NbS00048088g0001.1 protein AED:0.06 eAED:0.81 QI:0|0|0.5|1|0|0.5|2|10|211 NbS00007517g0014.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|130; (*GB) gi|57013971|ref|YP_173443.1| (e_value=7e-60) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00007517g0013.1 protein AED:0.47 eAED:0.47 QI:0|0|0.5|0.5|1|0.5|2|0|141; (*GB) gi|57013966|ref|YP_173438.1| (e_value=2e-44) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00007517g0017.1 protein AED:0.34 eAED:0.58 QI:0|0|0|0.75|0.33|0.25|4|0|156; (*GB) gi|57013974|ref|YP_173446.1| (e_value=2e-39) hypothetical protein NitaMp108 [Nicotiana tabacum]; NbS00007517g0012.1 protein AED:0.36 eAED:0.78 QI:0|0|0|1|0|0|4|0|335; (*GB) gi|57013964|ref|YP_173436.1| (e_value=5e-37) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00007517g0015.1 protein AED:0.45 eAED:0.51 QI:0|0|0|1|0|0|3|0|190; (*GB) gi|57013968|ref|YP_173440.1| (e_value=7e-84) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00007517g0016.1 protein AED:0.36 eAED:0.41 QI:0|0|0|1|0|0|2|0|144; (*GB) gi|57013969|ref|YP_173441.1| (e_value=8e-79) hypothetical protein NitaMp103 [Nicotiana tabacum]; NbS00026810g0011.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|611; (*GB) gi|21105742|gb|AAM34770.1|AF509870_1 (e_value=0.0) nam-like protein 7 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=3e-65) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT1G34190.1 (e_value=3e-116) | Symbols: anac017, NAC017 | NAC domain containing protein 17 | chr1:12451729-12453914 FORWARD LENGTH=557;; (*ITAG) Solyc04g072220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56809986-56813485 transcript_region:SL2.40ch04:56809986..56813485+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00026810g0010.1 protein AED:0.39 eAED:0.40 QI:141|0.81|0.82|0.95|0.90|0.95|23|0|748; (*GB) gi|297739344|emb|CBI29334.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94BU1|Y1181_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1;; (*TAIR) AT1G71810.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27002602-27007964 REVERSE LENGTH=692;; (*ITAG) Solyc04g072230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56815122-56829406 transcript_region:SL2.40ch04:56815122..56829406- go_terms:GO:0006468 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0006468 NbS00052309g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|0|0|2|0|108; (*GB) gi|224093782|ref|XP_002309989.1| (e_value=1e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g093900.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00001998g0010.1 protein AED:0.08 eAED:0.08 QI:326|1|1|1|0.7|0.81|11|269|343; (*GB) gi|297740093|emb|CBI30275.3| (e_value=3e-142) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8IXU6|S35F2_HUMAN (e_value=4e-47) Solute carrier family 35 member F2 OS=Homo sapiens GN=SLC35F2 PE=1 SV=1;; (*TAIR) AT3G59310.1 (e_value=6e-81) | Symbols: | Eukaryotic protein of unknown function (DUF914) | chr3:21922316-21924313 REVERSE LENGTH=332;; (*ITAG) Solyc09g009660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3063762-3068096 transcript_region:SL2.40ch09:3063762..3068096+ go_terms:GO:0022857 functional_description:"Solute carrier family 35 member F1 (AHRD V1 **-- B6TXS8_MAIZE); contains Interpro domain(s) IPR009262 Protein of unknown function DUF914, eukaryotic "; GO:0022857 NbS00001998g0013.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.25|0.75|1|1|4|0|198; (*GB) gi|356570845|ref|XP_003553594.1| (e_value=3e-109) PREDICTED: purple acid phosphatase 22-like [Glycine max];; (*SWP) sp|Q8S340|PPA22_ARATH (e_value=7e-101) Purple acid phosphatase 22 OS=Arabidopsis thaliana GN=PAP22 PE=2 SV=1;; (*TAIR) AT3G52820.1 (e_value=5e-102) | Symbols: ATPAP22, PAP22 | purple acid phosphatase 22 | chr3:19574236-19576938 REVERSE LENGTH=434;; (*ITAG) Solyc09g009600.1.1 (e_value=1e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3016831-3020600 transcript_region:SL2.40ch09:3016831..3020600- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00001998g0014.1 protein AED:0.33 eAED:0.45 QI:0|0.33|0|1|0.33|0.5|4|0|151; (*GB) gi|255575647|ref|XP_002528723.1| (e_value=6e-55) hydrolase, putative [Ricinus communis];; (*SWP) sp|Q8S340|PPA22_ARATH (e_value=2e-49) Purple acid phosphatase 22 OS=Arabidopsis thaliana GN=PAP22 PE=2 SV=1;; (*TAIR) AT3G52820.1 (e_value=2e-50) | Symbols: ATPAP22, PAP22 | purple acid phosphatase 22 | chr3:19574236-19576938 REVERSE LENGTH=434;; (*ITAG) Solyc09g009600.1.1 (e_value=9e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3016831-3020600 transcript_region:SL2.40ch09:3016831..3020600- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00035221g0001.1 protein AED:0.21 eAED:0.26 QI:0|0|0|0.66|1|1|6|0|303; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.1 (e_value=1e-31) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113920.2.1 (e_value=6e-118) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00057648g0013.1 protein AED:0.24 eAED:0.24 QI:168|0.87|0.77|0.88|0.5|0.55|9|0|321; (*GB) gi|225457415|ref|XP_002284912.1| (e_value=8e-88) PREDICTED: uncharacterized protein LOC100250124 [Vitis vinifera];; (*TAIR) AT3G47550.6 (e_value=8e-75) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17525278 FORWARD LENGTH=288;; (*ITAG) Solyc03g116030.2.1 (e_value=3e-117) genomic_reference:SL2.40ch03 gene_region:59609195-59614443 transcript_region:SL2.40ch03:59609195..59614443+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00057648g0003.1 protein AED:0.24 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|147795390|emb|CAN67605.1| (e_value=2e-23) hypothetical protein VITISV_030993 [Vitis vinifera];; (*ITAG) Solyc04g017610.2.1 (e_value=7e-78) genomic_reference:SL2.40ch04 gene_region:7569647-7585025 transcript_region:SL2.40ch04:7569647..7585025+ functional_description:"F-box domain containing protein expressed (AHRD V1 ***- Q2R211_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00057648g0010.1 protein AED:0.13 eAED:0.13 QI:524|1|1|1|0.5|0.33|3|190|497; (*GB) gi|359491711|ref|XP_002284930.2| (e_value=0.0) PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase isoform 1 [Vitis vinifera];; (*SWP) sp|Q94AA9|XGD1_ARATH (e_value=5e-17) Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2;; (*TAIR) AT1G74680.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:28059528-28060984 FORWARD LENGTH=461;; (*ITAG) Solyc03g116040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59616745-59620511 transcript_region:SL2.40ch03:59616745..59620511- go_terms:GO:0003824 functional_description:"Exostosin family-like protein (AHRD V1 **-- Q6Z527_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00058444g0007.1 protein AED:0.08 eAED:0.08 QI:708|1|1|1|1|1|4|1546|525; (*GB) gi|296083497|emb|CBI23466.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=1e-114) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G16745.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:9412185-9414053 FORWARD LENGTH=542;; (*ITAG) Solyc08g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1858666-1861740 transcript_region:SL2.40ch08:1858666..1861740- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00058444g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|429; (*GB) gi|225435385|ref|XP_002282624.1| (e_value=4e-99) PREDICTED: uncharacterized protein LOC100260316 [Vitis vinifera];; (*SWP) sp|Q66HG1|DMTF1_RAT (e_value=3e-16) Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus GN=Dmtf1 PE=2 SV=2;; (*TAIR) AT5G41020.1 (e_value=4e-86) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc08g007300.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1854448-1855449 transcript_region:SL2.40ch08:1854448..1855449+ go_terms:GO:0003677 functional_description:"Cyclin-D-binding Myb-like transcription factor 1 (AHRD V1 ***- DMTF1_MOUSE); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00059841g0001.1 protein AED:0.20 eAED:0.20 QI:216|1|0.88|1|0.62|0.77|9|328|563; (*GB) gi|255542904|ref|XP_002512515.1| (e_value=9e-129) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G56460.1 (e_value=4e-47) | Symbols: | HIT zinc finger ;PAPA-1-like conserved region | chr1:21146765-21149468 FORWARD LENGTH=502;; (*ITAG) Solyc01g100540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82309129-82312528 transcript_region:SL2.40ch01:82309129..82312528- go_terms:GO:0055114 functional_description:"PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL8_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region "; GO:0055114 NbS00015327g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|0.66|1|1|3|0|352; (*GB) gi|188474277|gb|ACD49738.1| (e_value=4e-74) BURP domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q942D4|BURP3_ORYSJ (e_value=1e-58) BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1;; (*TAIR) AT5G25610.1 (e_value=4e-55) | Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392;; (*ITAG) Solyc05g015300.2.1 (e_value=3e-177) genomic_reference:SL2.40ch05 gene_region:10294826-10297466 transcript_region:SL2.40ch05:10294826..10297466- go_terms:GO:0045735 functional_description:"BURP domain-containing protein (AHRD V1 **-- B2ZPK5_SOLTU); contains Interpro domain(s) IPR004873 BURP "; GO:0045735 NbS00015327g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|287; (*GB) gi|359476838|ref|XP_002266706.2| (e_value=1e-131) PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=1e-68) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT4G36160.1 (e_value=2e-110) | Symbols: ANAC076, VND2, NAC076 | NAC domain containing protein 76 | chr4:17110877-17112891 REVERSE LENGTH=377;; (*ITAG) Solyc02g084350.2.1 (e_value=1e-124) genomic_reference:SL2.40ch02 gene_region:42041409-42043859 transcript_region:SL2.40ch02:42041409..42043859- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HFJ5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00026078g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|96 NbS00027463g0004.1 protein AED:0.00 eAED:0.00 QI:220|1|1|1|0|0.33|3|132|632; (*GB) gi|255554925|ref|XP_002518500.1| (e_value=0.0) hypothetical protein RCOM_0905090 [Ricinus communis];; (*TAIR) AT4G21890.1 (e_value=8e-112) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11611874-11612674 REVERSE LENGTH=266;; (*ITAG) Solyc05g006410.2.1 (e_value=1e-31) genomic_reference:SL2.40ch05 gene_region:1044582-1047873 transcript_region:SL2.40ch05:1044582..1047873- go_terms:GO:0008270 functional_description:"Zinc finger MYND-type containing 15 (AHRD V1 ***- A2A642_MOUSE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0008270 NbS00033978g0003.1 protein AED:0.01 eAED:0.01 QI:185|1|1|1|1|1|2|390|496; (*GB) gi|255539811|ref|XP_002510970.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q8VYT5|FB254_ARATH (e_value=2e-165) F-box protein At5g07670 OS=Arabidopsis thaliana GN=At5g07670 PE=2 SV=1;; (*TAIR) AT5G07670.1 (e_value=2e-166) | Symbols: | RNI-like superfamily protein | chr5:2430421-2432065 FORWARD LENGTH=476;; (*ITAG) Solyc03g093310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47931540-47934107 transcript_region:SL2.40ch03:47931540..47934107- functional_description:"F-box family protein (AHRD V1 ***- B9H075_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00031369g0003.1 protein AED:0.09 eAED:0.15 QI:0|0|0|0.66|0.5|0.33|3|0|200; (*GB) gi|255586237|ref|XP_002533773.1| (e_value=4e-40) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SA82|BH052_ARATH (e_value=3e-24) Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1;; (*TAIR) AT1G30670.1 (e_value=2e-25) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10879311-10880188 REVERSE LENGTH=264;; (*ITAG) Solyc08g075110.1.1 (e_value=5e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56431587-56432571 transcript_region:SL2.40ch08:56431587..56432571- go_terms:GO:0003700 functional_description:"Transcription factor LAX PANICLE (AHRD V1 *--* LAX_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00058164g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.71|0.87|1|0.57|0.75|8|55|295; (*GB) gi|350535208|ref|NP_001234438.1| (e_value=2e-168) gamma-glutamylhydrolase 3 precursor [Solanum lycopersicum];; (*SWP) sp|O65355|GGH_ARATH (e_value=3e-111) Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2;; (*TAIR) AT1G78660.3 (e_value=1e-113) | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase 1 | chr1:29585901-29588117 FORWARD LENGTH=348;; (*ITAG) Solyc07g062280.2.1 (e_value=4e-171) genomic_reference:SL2.40ch07 gene_region:62279297-62282682 transcript_region:SL2.40ch07:62279297..62282682+ go_terms:GO:0034722 functional_description:"Gamma-glutamyl hydrolase 2 (AHRD V1 **** D7MX15_ARALY); contains Interpro domain(s) IPR015527 Peptidase C26, gamma-glutamyl hydrolase "; GO:0034722 NbS00028239g0009.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|224123416|ref|XP_002319073.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT5G28750.1 (e_value=7e-16) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=6e-24) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00028239g0010.1 protein AED:0.07 eAED:0.07 QI:1002|0.44|0.5|0.9|0.88|0.8|10|405|1115; (*GB) gi|356892154|gb|AET41696.1| (e_value=0.0) formin [Solanum lycopersicum];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=2e-174) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=2e-175) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc07g052730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58505463-58511995 transcript_region:SL2.40ch07:58505463..58511995+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00028239g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|422; (*GB) gi|14268476|emb|CAC39398.1| (e_value=9e-86) storekeeper protein [Solanum tuberosum];; (*TAIR) AT4G00390.1 (e_value=1e-18) | Symbols: | DNA-binding storekeeper protein-related transcriptional regulator | chr4:171650-172744 REVERSE LENGTH=364;; (*ITAG) Solyc07g052760.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58532611-58533759 transcript_region:SL2.40ch07:58532611..58533759+ functional_description:"Os09g0451700 protein (Fragment) (AHRD V1 *--- Q0J1B9_ORYSJ); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; NbS00028239g0011.1 protein AED:0.29 eAED:0.29 QI:362|0.66|0.85|0.85|0.83|0.71|7|89|143 NbS00028239g0012.1 protein AED:0.47 eAED:0.53 QI:0|0|0|1|0|0|2|0|92 NbS00026102g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.86|0.87|1|0.93|0.87|16|429|461; (*GB) gi|238814974|gb|ACR56690.1| (e_value=0.0) enolase [Nicotiana tabacum];; (*SWP) sp|P26300|ENO_SOLLC (e_value=0.0) Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1;; (*TAIR) AT2G36530.1 (e_value=0.0) | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444;; (*ITAG) Solyc09g009020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2370061-2375045 transcript_region:SL2.40ch09:2370061..2375045+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00026102g0007.1 protein AED:0.13 eAED:0.13 QI:124|0.75|0.77|1|0.87|0.88|9|302|302; (*GB) gi|269969912|gb|ACZ54945.1| (e_value=6e-150) type 2 histone deacetylase a [Nicotiana tabacum];; (*SWP) sp|Q6V9I6|HDT1_SOLCH (e_value=4e-119) Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1;; (*TAIR) AT3G44750.2 (e_value=2e-34) | Symbols: HDA3 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=242;; (*ITAG) Solyc09g009030.2.1 (e_value=2e-120) genomic_reference:SL2.40ch09 gene_region:2377785-2382402 transcript_region:SL2.40ch09:2377785..2382402- go_terms:GO:0003676,GO:0004407 functional_description:"Histone deacetylase 2a-like (AHRD V1 **** Q2XTE1_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0004407 NbS00059134g0005.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|230; (*GB) gi|1087017|gb|AAB35284.1| (e_value=3e-53) arabinogalactan-protein [Nicotiana alata];; (*ITAG) Solyc07g053640.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59416586-59418049 transcript_region:SL2.40ch07:59416586..59418049+ functional_description:"Arabinogalactan-protein (AHRD V1 *-*- Q41256_NICAL)"; NbS00039188g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.2|1|0.5|0.8|5|216|575; (*GB) gi|111054505|gb|ABH04326.1| (e_value=0.0) NPR1 [Nicotiana tabacum];; (*SWP) sp|P93002|NPR1_ARATH (e_value=9e-149) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1;; (*TAIR) AT1G64280.1 (e_value=7e-150) | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory protein (NPR1) | chr1:23853329-23855407 REVERSE LENGTH=593;; (*ITAG) Solyc07g040690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00039188g0012.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|57014007|ref|YP_173478.1| (e_value=3e-31) hypothetical protein NitaMp141 [Nicotiana tabacum]; NbS00039188g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|350; (*GB) gi|388252715|gb|AFK24440.1| (e_value=5e-146) HSFA9 [Coffea arabica];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=1e-84) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=9e-86) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc07g040680.2.1 (e_value=3e-167) genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00058541g0003.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|98; (*GB) gi|255548029|ref|XP_002515071.1| (e_value=1e-16) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=2e-15) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=3e-17) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00002849g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|74; (*GB) gi|118562909|dbj|BAF37799.1| (e_value=2e-35) hypothetical protein [Ipomoea trifida];; (*TAIR) AT5G22510.1 (e_value=4e-32) | Symbols: INV-E, At-A/N-InvE | alkaline/neutral invertase | chr5:7474974-7477479 REVERSE LENGTH=617;; (*ITAG) Solyc11g067050.1.1 (e_value=4e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49887741-49890853 transcript_region:SL2.40ch11:49887741..49890853+ go_terms:GO:0003824 functional_description:"Neutral invertase (AHRD V1 ***- Q8L6W3_BETVU); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0003824 NbS00002849g0004.1 protein AED:0.03 eAED:0.03 QI:489|1|1|1|0.5|0.33|3|211|867; (*GB) gi|225436305|ref|XP_002269994.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase KIPK-like [Vitis vinifera];; (*SWP) sp|Q9LFA2|KIPK_ARATH (e_value=0.0) Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1;; (*TAIR) AT2G36350.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:15238903-15241864 FORWARD LENGTH=949;; (*ITAG) Solyc11g067070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49895910-49899607 transcript_region:SL2.40ch11:49895910..49899607- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q6RC06_PEA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002849g0001.1 protein AED:0.25 eAED:0.30 QI:0|0|0|0.83|1|1|6|0|340; (*GB) gi|225435385|ref|XP_002282624.1| (e_value=4e-44) PREDICTED: uncharacterized protein LOC100260316 [Vitis vinifera];; (*SWP) sp|Q8GUU3|CPS3B_ARATH (e_value=3e-17) Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2;; (*TAIR) AT5G41020.1 (e_value=1e-35) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc03g019800.2.1 (e_value=3e-70) genomic_reference:SL2.40ch03 gene_region:6726971-6728769 transcript_region:SL2.40ch03:6726971..6728769- go_terms:GO:0003677 functional_description:"Myb-like protein B (AHRD V1 *-*- MYBB_DICDI); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00002849g0003.1 protein AED:0.30 eAED:0.36 QI:96|0.75|0.8|1|1|1|5|0|244; (*GB) gi|225436307|ref|XP_002266468.1| (e_value=2e-98) PREDICTED: putative low molecular weight protein-tyrosine-phosphatase slr0328-like [Vitis vinifera];; (*SWP) sp|Q55535|Y328_SYNY3 (e_value=1e-36) Putative low molecular weight protein-tyrosine-phosphatase slr0328 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0328 PE=3 SV=1;; (*TAIR) AT3G44620.1 (e_value=1e-86) | Symbols: | protein tyrosine phosphatases;protein tyrosine phosphatases | chr3:16193858-16195422 FORWARD LENGTH=239;; (*ITAG) Solyc11g067060.1.1 (e_value=1e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49891569-49894730 transcript_region:SL2.40ch11:49891569..49894730- go_terms:GO:0006470 functional_description:"Low molecular weight protein-tyrosine-phosphatase slr0328 (AHRD V1 ***- B6TIW5_MAIZE); contains Interpro domain(s) IPR000106 Protein-tyrosine phosphatase/arsenate reductase "; GO:0006470 NbS00003320g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|129; (*GB) gi|225458215|ref|XP_002281680.1| (e_value=2e-61) PREDICTED: 50S ribosomal protein L31, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FWS4|RK31_ARATH (e_value=8e-55) 50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1;; (*TAIR) AT1G75350.1 (e_value=6e-56) | Symbols: emb2184 | Ribosomal protein L31 | chr1:28272163-28272687 FORWARD LENGTH=144;; (*ITAG) Solyc04g080630.2.1 (e_value=2e-77) genomic_reference:SL2.40ch04 gene_region:62332069-62332925 transcript_region:SL2.40ch04:62332069..62332925+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L31 (AHRD V1 ***- A5AHS8_VITVI); contains Interpro domain(s) IPR002150 Ribosomal protein L31 "; GO:0005840 NbS00003320g0005.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|225430692|ref|XP_002265924.1| (e_value=4e-26) PREDICTED: uncharacterized protein LOC100263337 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=5e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc04g080640.1.1 (e_value=3e-143) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:62343699-62344502 transcript_region:SL2.40ch04:62343699..62344502+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00003320g0018.1 protein AED:0.05 eAED:0.05 QI:119|1|1|1|1|1|5|138|419; (*GB) gi|225458217|ref|XP_002281804.1| (e_value=0.0) PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Vitis vinifera];; (*SWP) sp|Q9FJZ3|MAN7_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=0.0) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc04g080620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62327013-62331103 transcript_region:SL2.40ch04:62327013..62331103+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00003320g0020.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|288; (*GB) gi|321150024|gb|ADW66159.1| (e_value=9e-72) pistil-specific extensin-like protein [Solanum nigrum];; (*SWP) sp|Q03211|PEXLP_TOBAC (e_value=2e-21) Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G34700.1 (e_value=4e-30) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:14634298-14635597 REVERSE LENGTH=175;; (*ITAG) Solyc02g078040.2.1 (e_value=3e-71) genomic_reference:SL2.40ch02 gene_region:37435419-37436560 transcript_region:SL2.40ch02:37435419..37436560- go_terms:GO:0005199 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00053191g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.71|0.5|0.75|1|1|8|0|579; (*GB) gi|13623892|dbj|BAB41076.1| (e_value=0.0) MAR-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9MAB3|NOP5B_ARATH (e_value=0.0) Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1;; (*TAIR) AT3G05060.1 (e_value=0.0) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533;; (*ITAG) Solyc09g083080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64141872-64145889 transcript_region:SL2.40ch09:64141872..64145889- go_terms:GO:0051082 functional_description:"Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0051082 NbS00019044g0002.1 protein AED:0.03 eAED:0.22 QI:218|1|0.5|1|0|0|2|0|231; (*GB) gi|113205247|gb|AAT39965.2| (e_value=3e-30) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00059282g0004.1 protein AED:0.13 eAED:0.13 QI:202|1|1|1|1|1|5|209|604; (*GB) gi|359485613|ref|XP_002269696.2| (e_value=0.0) PREDICTED: WRKY transcription factor 6-like [Vitis vinifera];; (*SWP) sp|Q9XEC3|WRK42_ARATH (e_value=1e-115) Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1;; (*TAIR) AT4G04450.1 (e_value=1e-116) | Symbols: WRKY42, AtWRKY42 | WRKY family transcription factor | chr4:2218379-2221113 FORWARD LENGTH=528;; (*ITAG) Solyc07g051840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57685533-57688827 transcript_region:SL2.40ch07:57685533..57688827+ go_terms:GO:0005515,GO:0010843 functional_description:"WRKY transcription factor (AHRD V1 ***- D0PSE9_9LAMI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00056008g0003.1 protein AED:0.11 eAED:0.27 QI:197|0.75|0.8|1|1|0.8|5|0|200; (*GB) gi|183238710|gb|ACC60981.1| (e_value=2e-105) beta-galactosidase 1 precursor [Petunia x hybrida];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=1e-100) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=2e-94) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc06g062580.2.1 (e_value=2e-111) genomic_reference:SL2.40ch06 gene_region:35886685-35893053 transcript_region:SL2.40ch06:35886685..35893053+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B2LYJ3_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00015473g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|147784780|emb|CAN66525.1| (e_value=2e-66) hypothetical protein VITISV_043977 [Vitis vinifera];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=2e-46) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT3G25290.2 (e_value=5e-55) | Symbols: | Auxin-responsive family protein | chr3:9208955-9210353 FORWARD LENGTH=393;; (*ITAG) Solyc06g083140.2.1 (e_value=1e-71) genomic_reference:SL2.40ch06 gene_region:44972908-44974194 transcript_region:SL2.40ch06:44972908..44974194- go_terms:GO:0005201 functional_description:"Auxin-induced in root cultures protein 12 (AHRD V1 **-- AIR12_ARATH); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; GO:0005201 NbS00012078g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|0.66|0.5|4|0|772; (*GB) gi|225440714|ref|XP_002275038.1| (e_value=0.0) PREDICTED: chaperone protein ClpB1-like [Vitis vinifera];; (*TAIR) AT3G52490.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc01g007260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1820455-1824077 transcript_region:SL2.40ch01:1820455..1824077- go_terms:GO:0019538 functional_description:"Os04g0416500 protein (Fragment) (AHRD V1 ***- Q0JDA8_ORYSJ); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00012078g0007.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|116; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=7e-20) hypothetical protein [Nicotiana tabacum]; NbS00035114g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|297734692|emb|CBI16743.3| (e_value=9e-15) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GXN2|PTR47_ARATH (e_value=8e-16) Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2;; (*TAIR) AT4G21680.1 (e_value=6e-17) | Symbols: NRT1.8 | NITRATE TRANSPORTER 1.8 | chr4:11517540-11519576 REVERSE LENGTH=589;; (*ITAG) Solyc01g006440.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1047474-1051067 transcript_region:SL2.40ch01:1047474..1051067- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00006218g0003.1 protein AED:0.04 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|248; (*GB) gi|255576082|ref|XP_002528936.1| (e_value=6e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16530.1 (e_value=4e-25) | Symbols: | Family of unknown function (DUF577) | chr4:9311355-9315554 FORWARD LENGTH=803;; (*ITAG) Solyc08g078740.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59648497-59649171 transcript_region:SL2.40ch08:59648497..59649171- functional_description:"Unknown Protein (AHRD V1)"; NbS00006218g0008.1 protein AED:0.07 eAED:0.07 QI:222|0.5|0.66|1|1|1|3|51|107; (*GB) gi|356563320|ref|XP_003549912.1| (e_value=8e-17) PREDICTED: uncharacterized protein LOC100804630 [Glycine max];; (*ITAG) Solyc08g078730.2.1 (e_value=1e-58) genomic_reference:SL2.40ch08 gene_region:59643244-59645089 transcript_region:SL2.40ch08:59643244..59645089- functional_description:"Unknown Protein (AHRD V1)"; NbS00006218g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|118; (*TAIR) AT5G47590.1 (e_value=4e-12) | Symbols: | Heat shock protein HSP20/alpha crystallin family | chr5:19297945-19299099 REVERSE LENGTH=264;; (*ITAG) Solyc08g078720.2.1 (e_value=4e-63) genomic_reference:SL2.40ch08 gene_region:59641339-59642959 transcript_region:SL2.40ch08:59641339..59642959+ functional_description:"Heat shock protein (AHRD V1 *-*- O64960_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00037267g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.90|0.75|1|1|1|12|0|627; (*GB) gi|350538279|ref|NP_001234079.1| (e_value=0.0) phosphoenolpyruvate carboxykinase [Solanum lycopersicum];; (*SWP) sp|Q9T074|PCKA_ARATH (e_value=0.0) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1;; (*TAIR) AT4G37870.1 (e_value=0.0) | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671;; (*ITAG) Solyc04g076880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising "; GO:0004612,GO:0042802 NbS00029934g0004.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|105; (*ITAG) Solyc11g007190.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1616508-1616720 transcript_region:SL2.40ch11:1616508..1616720- functional_description:"Unknown Protein (AHRD V1)"; NbS00029934g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.45|1|0.7|0.72|11|0|474; (*GB) gi|47933777|gb|AAT39459.1| (e_value=0.0) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q43116|PDI_RICCO (e_value=6e-175) Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1;; (*TAIR) AT1G21750.1 (e_value=9e-167) | Symbols: ATPDIL1-1, ATPDI5, PDI5, PDIL1-1 | PDI-like 1-1 | chr1:7645767-7648514 FORWARD LENGTH=501;; (*ITAG) Solyc06g005940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:921114-925482 transcript_region:SL2.40ch06:921114..925482- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00015045g0004.1 protein AED:0.17 eAED:0.17 QI:550|1|1|1|0.42|0.37|8|285|419; (*GB) gi|224124260|ref|XP_002329979.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6ZMB5|T184A_HUMAN (e_value=3e-63) Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1;; (*TAIR) AT3G05940.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00017781g0004.1 protein AED:0.26 eAED:0.26 QI:149|1|0.92|1|0.92|1|14|0|742; (*GB) gi|225464936|ref|XP_002275292.1| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera];; (*SWP) sp|Q876F5|SC242_SACBA (e_value=9e-21) Protein transport protein SEC24-2 OS=Saccharomyces bayanus GN=SEC242 PE=3 SV=1;; (*TAIR) AT2G27460.1 (e_value=0.0) | Symbols: | sec23/sec24 transport family protein | chr2:11740670-11744867 FORWARD LENGTH=745;; (*ITAG) Solyc11g068500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50281644-50291621 transcript_region:SL2.40ch11:50281644..50291621- go_terms:GO:0030127 functional_description:"Transport protein SEC24 (AHRD V1 ***- C1H2P3_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0030127 NbS00024102g0003.1 protein AED:0.45 eAED:0.48 QI:0|0|0|1|1|1|2|0|81; (*GB) gi|255583297|ref|XP_002532412.1| (e_value=2e-31) STS14 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q40374|PR1_MEDTR (e_value=1e-16) Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1;; (*TAIR) AT4G25780.1 (e_value=2e-23) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:13121107-13121679 FORWARD LENGTH=190;; (*ITAG) Solyc07g006700.1.1 (e_value=9e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1559173-1559763 transcript_region:SL2.40ch07:1559173..1559763- go_terms:GO:0005515 functional_description:"Pathogenesis-related protein PR-1 (AHRD V1 **-- B4FQY0_MAIZE); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005515 NbS00026878g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|195542260|gb|AAR87850.2| (e_value=2e-23) fertilization-related kinase 1 [Solanum chacoense];; (*ITAG) Solyc06g065790.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027629g0003.1 protein AED:0.00 eAED:0.00 QI:476|1|1|1|1|1|2|309|453; (*GB) gi|225449066|ref|XP_002275108.1| (e_value=0.0) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=5e-37) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G39220.1 (e_value=0.0) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc05g056030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00001959g0009.1 protein AED:0.30 eAED:0.30 QI:310|0.8|0.66|1|1|1|6|0|375; (*GB) gi|255576115|ref|XP_002528952.1| (e_value=1e-136) Dual specificity protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=6e-119) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=5e-120) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc07g049410.2.1 (e_value=6e-158) genomic_reference:SL2.40ch07 gene_region:56998369-57004964 transcript_region:SL2.40ch07:56998369..57004964- go_terms:GO:0005516 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0005516 NbS00001959g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|297739215|emb|CBI28866.3| (e_value=5e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g049400.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56997798-56998310 transcript_region:SL2.40ch07:56997798..56998310+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MVE2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008300g0004.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|214; (*GB) gi|356501691|ref|XP_003519657.1| (e_value=2e-49) PREDICTED: F-box protein SNE-like [Glycine max];; (*SWP) sp|Q9LUB6|SNE_ARATH (e_value=2e-33) F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1;; (*TAIR) AT5G48170.1 (e_value=2e-34) | Symbols: SLY2 | F-box family protein | chr5:19532729-19533202 REVERSE LENGTH=157;; (*ITAG) Solyc05g040040.1.1 (e_value=5e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:48096955-48097413 transcript_region:SL2.40ch05:48096955..48097413+ functional_description:"F-box protein GID2 (AHRD V1 ***- B6SU06_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00017038g0009.1 protein AED:0.28 eAED:0.30 QI:402|0.91|0.92|1|0.83|0.92|13|342|460; (*GB) gi|350534912|ref|NP_001234422.1| (e_value=0.0) chorismate synthase 1, chloroplastic precursor [Solanum lycopersicum];; (*SWP) sp|Q42884|AROC1_SOLLC (e_value=0.0) Chorismate synthase 1, chloroplastic OS=Solanum lycopersicum GN=CS1 PE=2 SV=1;; (*TAIR) AT1G48850.1 (e_value=0.0) | Symbols: EMB1144 | chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative | chr1:18065154-18067956 REVERSE LENGTH=436;; (*ITAG) Solyc04g049350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40676150-40683840 transcript_region:SL2.40ch04:40676150..40683840- go_terms:GO:0004107,GO:0042602 functional_description:"Chorismate synthase (AHRD V1 **** A5APN1_VITVI); contains Interpro domain(s) IPR000453 Chorismate synthase "; GO:0004107,GO:0042602 NbS00031214g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.76|0.64|0.92|0.92|0.85|14|0|842; (*GB) gi|365189292|dbj|BAL42333.1| (e_value=0.0) Heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P35016|ENPL_CATRO (e_value=0.0) Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1;; (*TAIR) AT4G24190.2 (e_value=0.0) | Symbols: SHD, AtHsp90.7, AtHsp90-7 | Chaperone protein htpG family protein | chr4:12551902-12555851 REVERSE LENGTH=823;; (*ITAG) Solyc04g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63110553-63116088 transcript_region:SL2.40ch04:63110553..63116088- go_terms:GO:0042623,GO:0050750 functional_description:"Chaperone protein htpG (AHRD V1 **-- HTPG_MYCA1); contains Interpro domain(s) IPR015566 Molecular chaperone, heat shock protein, endoplasmin "; GO:0042623,GO:0050750 NbS00056931g0003.1 protein AED:0.00 eAED:0.00 QI:419|1|1|1|0.66|0.5|4|395|885; (*GB) gi|297738047|emb|CBI27248.3| (e_value=3e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69360.1 (e_value=8e-36) | Symbols: | Plant protein of unknown function (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896;; (*ITAG) Solyc02g088480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45143427-45147253 transcript_region:SL2.40ch02:45143427..45147253+ functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00025653g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|116; (*GB) gi|19698450|gb|AAL93153.1|AF485267_1 (e_value=8e-55) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=1e-43) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=1e-45) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc01g104860.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:84946050-84948029 transcript_region:SL2.40ch01:84946050..84948029+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00016751g0004.1 protein AED:0.29 eAED:0.31 QI:41|1|0|1|0|0|2|0|516; (*GB) gi|302398697|gb|ADL36643.1| (e_value=5e-127) C2H2L domain class transcription factor [Malus x domestica];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=3e-75) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT2G02070.1 (e_value=5e-89) | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain 5 | chr2:505523-509154 FORWARD LENGTH=602;; (*ITAG) Solyc04g008500.2.1 (e_value=7e-95) genomic_reference:SL2.40ch04 gene_region:2123723-2129872 transcript_region:SL2.40ch04:2123723..2129872+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU0_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013134g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|301; (*GB) gi|15227200|ref|NP_179828.1| (e_value=1e-146) peroxidase [Arabidopsis thaliana];; (*SWP) sp|Q9SJZ2|PER17_ARATH (e_value=4e-148) Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1;; (*TAIR) AT2G22420.1 (e_value=3e-149) | Symbols: | Peroxidase superfamily protein | chr2:9513341-9514484 FORWARD LENGTH=329;; (*ITAG) Solyc11g010120.1.1 (e_value=4e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3243625-3246066 transcript_region:SL2.40ch11:3243625..3246066+ go_terms:GO:0055114 functional_description:"Peroxidase 17 (AHRD V1 ***- D7LE03_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00013134g0010.1 protein AED:0.22 eAED:0.23 QI:0|0.25|0.4|1|0|0.2|5|0|210; (*GB) gi|255567758|ref|XP_002524857.1| (e_value=5e-82) catalytic, putative [Ricinus communis];; (*TAIR) AT5G10460.1 (e_value=2e-72) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:3287822-3289844 FORWARD LENGTH=306;; (*ITAG) Solyc12g038820.1.1 (e_value=4e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:36481364-36482116 transcript_region:SL2.40ch12:36481364..36482116+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IIA (AHRD V1 ***- B6TMM7_MAIZE); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00013134g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|137; (*GB) gi|57013984|ref|YP_173456.1| (e_value=3e-39) cytochrome oxidase subunit 3 [Nicotiana tabacum];; (*SWP) sp|P32808|COX3_HELAN (e_value=8e-40) Cytochrome c oxidase subunit 3 OS=Helianthus annuus GN=COX3 PE=3 SV=1;; (*ITAG) ATMG00730.1 (e_value=1e-33) | Symbols: COX3 | cytochrome c oxidase subunit 3 | chrM:218280-219077 FORWARD LENGTH=265;; (*ITAG) Solyc00g019730.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11782543-11782983 transcript_region:SL2.40ch00:11782543..11782983- go_terms:GO:0016020 functional_description:"Cytochrome c oxidase subunit 3 (AHRD V1 ***- Q5M9V7_TOBAC); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III "; GO:0016020 NbS00016700g0002.1 protein AED:0.02 eAED:0.02 QI:108|1|1|1|1|1|3|179|319; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=2e-56) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G49620.1 (e_value=4e-85) | Symbols: AtMYB78, MYB78 | myb domain protein 78 | chr5:20137491-20139384 REVERSE LENGTH=307;; (*ITAG) Solyc05g053330.2.1 (e_value=6e-122) genomic_reference:SL2.40ch05 gene_region:62594925-62596759 transcript_region:SL2.40ch05:62594925..62596759+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00061851g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.88|1|0.75|0.66|9|555|334; (*GB) gi|297736409|emb|CBI25132.3| (e_value=2e-137) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54461|RSME_BACSU (e_value=5e-14) Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) GN=rsmE PE=1 SV=1;; (*TAIR) AT1G50000.1 (e_value=1e-132) | Symbols: | methyltransferases | chr1:18515183-18517244 REVERSE LENGTH=296;; (*ITAG) Solyc01g106880.2.1 (e_value=4e-179) genomic_reference:SL2.40ch01 gene_region:86356164-86360453 transcript_region:SL2.40ch01:86356164..86360453+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase E (AHRD V1 ***- C6WZC1_FLAB3); contains Interpro domain(s) IPR006700 Ribosomal RNA small subunit methyltransferase E "; GO:0006364 NbS00014696g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|16903206|gb|AAL27855.1| (e_value=4e-38) lipid transfer protein precursor [Davidia involucrata];; (*SWP) sp|Q9M5X7|NLTP_MALDO (e_value=1e-34) Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1;; (*TAIR) AT5G59320.1 (e_value=1e-28) | Symbols: LTP3 | lipid transfer protein 3 | chr5:23929051-23929492 FORWARD LENGTH=115;; (*ITAG) Solyc08g067510.1.1 (e_value=6e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53728036-53728404 transcript_region:SL2.40ch08:53728036..53728404+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q93YX9_DAVIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00024836g0005.1 protein AED:0.09 eAED:0.09 QI:133|0.86|0.87|1|0.8|0.87|16|389|531; (*GB) gi|357449789|ref|XP_003595171.1| (e_value=0.0) Nucleosome/chromatin assembly factor group [Medicago truncatula];; (*SWP) sp|O22607|MSI4_ARATH (e_value=0.0) WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3;; (*TAIR) AT2G19520.1 (e_value=0.0) | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507;; (*ITAG) Solyc03g121580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00000372g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|91; (*GB) gi|357111483|ref|XP_003557542.1| (e_value=3e-51) PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=1e-43) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=6e-44) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00000372g0005.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|136 NbS00010526g0004.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00010526g0014.1 protein AED:0.12 eAED:0.12 QI:149|0.95|0.95|1|0.95|0.95|22|375|1049; (*GB) gi|297746163|emb|CBI16219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc06g075580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43344331-43351355 transcript_region:SL2.40ch06:43344331..43351355- go_terms:GO:0008574 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574 NbS00010526g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.7|0.63|1|0.8|0.63|11|0|682; (*GB) gi|225435144|ref|XP_002281695.1| (e_value=0.0) PREDICTED: putative respiratory burst oxidase homolog protein H-like [Vitis vinifera];; (*SWP) sp|Q9FJD6|RBOHH_ARATH (e_value=0.0) Putative respiratory burst oxidase homolog protein H OS=Arabidopsis thaliana GN=RBOHH PE=3 SV=1;; (*TAIR) AT5G60010.1 (e_value=0.0) | Symbols: | ferric reductase-like transmembrane component family protein | chr5:24160456-24164755 FORWARD LENGTH=886;; (*ITAG) Solyc06g075570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43338737-43343040 transcript_region:SL2.40ch06:43338737..43343040- go_terms:GO:0016174,GO:0016175 functional_description:"Respiratory burst oxidase protein A (AHRD V1 **** Q0MRQ8_MAIZE); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174,GO:0016175 NbS00048952g0005.1 protein AED:0.36 eAED:0.36 QI:281|0.5|0.66|1|0.5|0.33|3|0|108; (*ITAG) Solyc09g090710.2.1 (e_value=2e-42) genomic_reference:SL2.40ch09 gene_region:65497039-65498583 transcript_region:SL2.40ch09:65497039..65498583+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022504g0004.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.75|1|1|4|0|421; (*GB) gi|359474405|ref|XP_003631455.1| (e_value=2e-142) PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera];; (*SWP) sp|Q9LVS3|PP422_ARATH (e_value=1e-95) Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1;; (*TAIR) AT5G47360.1 (e_value=8e-97) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19214445-19215878 REVERSE LENGTH=477;; (*ITAG) Solyc08g078280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59258619-59260049 transcript_region:SL2.40ch08:59258619..59260049- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00022504g0008.1 protein AED:0.40 eAED:0.40 QI:21|0.83|0.57|1|0.33|0.42|7|0|343; (*GB) gi|359496486|ref|XP_002269655.2| (e_value=2e-125) PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like protein-like [Vitis vinifera];; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=1e-111) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=8e-113) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc08g078270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59252637-59256975 transcript_region:SL2.40ch08:59252637..59256975- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00028105g0001.1 protein AED:0.30 eAED:0.33 QI:0|0.75|0.8|1|0.25|0.4|5|1332|81; (*GB) gi|356530711|ref|XP_003533924.1| (e_value=2e-12) PREDICTED: lipid phosphate phosphatase 2-like [Glycine max];; (*TAIR) AT3G18220.1 (e_value=1e-12) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr3:6248355-6249799 FORWARD LENGTH=308;; (*ITAG) Solyc05g008800.2.1 (e_value=2e-15) genomic_reference:SL2.40ch05 gene_region:3036036-3039708 transcript_region:SL2.40ch05:3036036..3039708- go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00028105g0009.1 protein AED:0.18 eAED:0.18 QI:149|0.69|0.57|1|0.61|0.64|14|320|624; (*GB) gi|297745052|emb|CBI38644.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8K4Q7|CERK1_MOUSE (e_value=7e-34) Ceramide kinase OS=Mus musculus GN=Cerk PE=2 SV=2;; (*TAIR) AT5G51290.1 (e_value=1e-174) | Symbols: | Diacylglycerol kinase family protein | chr5:20844252-20848157 REVERSE LENGTH=608;; (*ITAG) Solyc05g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3023478-3033476 transcript_region:SL2.40ch05:3023478..3033476+ go_terms:GO:0001729 functional_description:"Ceramide kinase (AHRD V1 **** Q6USK2_ARATH); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0001729 NbS00020642g0002.1 protein AED:0.37 eAED:0.48 QI:0|0|0|1|0.4|0.5|6|0|243; (*GB) gi|359473655|ref|XP_002270371.2| (e_value=6e-49) PREDICTED: probable S-acyltransferase At3g18620-like [Vitis vinifera];; (*SWP) sp|Q9LIH7|ZDHC7_ARATH (e_value=3e-34) Probable S-acyltransferase At3g18620 OS=Arabidopsis thaliana GN=At3g18620 PE=2 SV=1;; (*TAIR) AT3G18620.1 (e_value=3e-35) | Symbols: | DHHC-type zinc finger family protein | chr3:6408849-6410716 FORWARD LENGTH=345;; (*ITAG) Solyc04g009380.1.1 (e_value=2e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2807742-2815384 transcript_region:SL2.40ch04:2807742..2815384+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00025146g0004.1 protein AED:0.30 eAED:0.30 QI:148|0.66|0.85|1|0.83|0.71|7|298|408; (*GB) gi|119224824|dbj|BAF41219.1| (e_value=0.0) cytochrome P450 [Solanum lycopersicum];; (*SWP) sp|O64989|C90B1_ARATH (e_value=1e-175) Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=2;; (*TAIR) AT3G50660.1 (e_value=1e-176) | Symbols: DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 | Cytochrome P450 superfamily protein | chr3:18814262-18817168 REVERSE LENGTH=513;; (*ITAG) Solyc02g085360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42860844-42865218 transcript_region:SL2.40ch02:42860844..42865218- go_terms:GO:0010012 functional_description:"Cytochrome P450"; GO:0010012 NbC24168486g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|343424521|gb|AEM24937.1| (e_value=2e-53) thionin-like protein [Nicotiana tabacum];; (*ITAG) Solyc10g007870.2.1 (e_value=1e-22) genomic_reference:SL2.40ch10 gene_region:2075626-2077518 transcript_region:SL2.40ch10:2075626..2077518+ functional_description:"Tumor-related protein (AHRD V1 ***- Q40447_9SOLA)"; NbS00007660g0008.1 protein AED:0.18 eAED:0.18 QI:139|0.6|0.5|1|0.6|0.33|6|0|927; (*GB) gi|255539853|ref|XP_002510991.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q07423|HEX6_RICCO (e_value=0.0) Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1;; (*TAIR) AT4G02050.1 (e_value=2e-170) | Symbols: STP7 | sugar transporter protein 7 | chr4:898387-900095 REVERSE LENGTH=513;; (*ITAG) Solyc03g093410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48148120-48150025 transcript_region:SL2.40ch03:48148120..48150025+ go_terms:GO:0005358 functional_description:"High-affinity glucose transporter (AHRD V1 **** HGT1_KLULA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358 NbS00007660g0009.1 protein AED:0.42 eAED:0.49 QI:203|0.5|0.8|1|0.25|0.4|5|0|93 NbS00047571g0001.1 protein AED:0.38 eAED:0.38 QI:202|1|0.5|1|0|0|2|0|71; (*GB) gi|255577161|ref|XP_002529464.1| (e_value=5e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G55125.2 (e_value=9e-32) | Symbols: | Ribosomal protein L31 | chr5:22372737-22372967 FORWARD LENGTH=76;; (*ITAG) Solyc11g068490.1.1 (e_value=9e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50278529-50278717 transcript_region:SL2.40ch11:50278529..50278717- functional_description:"cDNA clone J013021P22 full insert sequence (AHRD V1 ***- B7EAV4_ORYSJ)"; NbS00047571g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|0.5|2|0|79; (*GB) gi|224126599|ref|XP_002319877.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08580.1 (e_value=3e-19) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:2715296-2716351 REVERSE LENGTH=123;; (*ITAG) Solyc03g096960.2.1 (e_value=4e-37) genomic_reference:SL2.40ch03 gene_region:52783754-52785783 transcript_region:SL2.40ch03:52783754..52785783+ functional_description:"Pm52 protein (AHRD V1 ***- Q2Z1Y5_PRUMU)"; NbS00047571g0012.1 protein AED:0.25 eAED:0.25 QI:289|0.75|0.76|1|0.58|0.69|13|407|458; (*GB) gi|224144970|ref|XP_002325479.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6AWX0|XYLL2_ARATH (e_value=6e-173) D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1;; (*TAIR) AT5G17010.3 (e_value=5e-174) | Symbols: | Major facilitator superfamily protein | chr5:5587851-5592332 REVERSE LENGTH=503;; (*ITAG) Solyc03g096950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52773866-52782491 transcript_region:SL2.40ch03:52773866..52782491+ go_terms:GO:0015519 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00017699g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|1|1|3|0|154; (*GB) gi|585876|sp|Q07761.1|RL23A_TOBAC (e_value=8e-63) RecName: Full=60S ribosomal protein L23a; AltName: Full=L25;; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=2e-64) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=1e-56) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc10g086330.1.1 (e_value=2e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64518706-64520781 transcript_region:SL2.40ch10:64518706..64520781+ go_terms:GO:0005840,GO:0000166 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR019985 Ribosomal protein L23 "; GO:0005840,GO:0000166 NbS00022924g0001.1 protein AED:0.05 eAED:0.05 QI:547|1|0.5|1|0|0.5|2|0|548; (*GB) gi|291464069|gb|ADE05572.1| (e_value=0.0) increased size exclusion limit 1b [Nicotiana benthamiana];; (*SWP) sp|Q8W4E1|RH47_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana GN=RH47 PE=1 SV=2;; (*TAIR) AT1G12770.1 (e_value=0.0) | Symbols: ISE1, EMB1586 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:4351888-4353543 FORWARD LENGTH=551;; (*ITAG) Solyc08g080550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60991283-60992929 transcript_region:SL2.40ch08:60991283..60992929+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase DeaD (AHRD V1 **** C5ZVH9_9HELI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00022924g0007.1 protein AED:0.28 eAED:0.28 QI:317|0.85|0.75|1|1|1|8|0|325; (*GB) gi|33186647|gb|AAP97493.1| (e_value=0.0) UDP-Glc-4-epimerase [Solanum tuberosum];; (*SWP) sp|Q42605|GALE1_ARATH (e_value=0.0) UDP-glucose 4-epimerase 1 OS=Arabidopsis thaliana GN=At1g12780 PE=1 SV=2;; (*TAIR) AT1G12780.1 (e_value=0.0) | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose 4-epimerase 1 | chr1:4356124-4358120 REVERSE LENGTH=351;; (*ITAG) Solyc08g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60995122-60998260 transcript_region:SL2.40ch08:60995122..60998260- go_terms:GO:0003978,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B0M3E8_PEA); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0003978,GO:0042803 NbS00031897g0009.1 protein AED:0.32 eAED:0.33 QI:0|0.6|0.5|0.83|0.2|0.33|6|0|543; (*GB) gi|255575572|ref|XP_002528686.1| (e_value=0.0) protein kinase atsik, putative [Ricinus communis];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=1e-58) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G08760.1 (e_value=3e-179) | Symbols: ATSIK | Protein kinase superfamily protein | chr3:2658129-2659984 REVERSE LENGTH=557;; (*ITAG) Solyc10g075040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58061308-58063925 transcript_region:SL2.40ch10:58061308..58063925- go_terms:GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00031897g0008.1 protein AED:0.12 eAED:0.12 QI:343|1|0.92|1|0.75|0.76|13|0|909; (*GB) gi|225439689|ref|XP_002267484.1| (e_value=0.0) PREDICTED: B3 domain-containing protein Os07g0679700-like [Vitis vinifera];; (*SWP) sp|Q5CCK4|VAL2_ARATH (e_value=0.0) B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1;; (*TAIR) AT4G32010.1 (e_value=0.0) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc10g075030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58049176-58060149 transcript_region:SL2.40ch10:58049176..58060149+ go_terms:GO:0003700 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00006165g0008.1 protein AED:0.00 eAED:0.00 QI:228|1|0.5|1|0|0.5|2|0|26 NbS00009107g0010.1 protein AED:0.23 eAED:0.29 QI:150|0.83|0.71|1|0.66|0.85|7|0|265; (*GB) gi|225448142|ref|XP_002263770.1| (e_value=2e-121) PREDICTED: embryogenesis-associated protein EMB8 [Vitis vinifera];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=2e-35) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT1G34340.1 (e_value=3e-105) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:12530936-12534031 FORWARD LENGTH=530;; (*ITAG) Solyc01g103670.2.1 (e_value=5e-144) genomic_reference:SL2.40ch01 gene_region:83978628-83987203 transcript_region:SL2.40ch01:83978628..83987203+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA)"; GO:0003824 NbS00009107g0008.1 protein AED:0.55 eAED:0.77 QI:52|0.2|0.33|0.83|0.2|0.33|6|0|174; (*GB) gi|297739535|emb|CBI29717.3| (e_value=1e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G49950.1 (e_value=2e-34) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20319871-20323552 REVERSE LENGTH=537;; (*ITAG) Solyc01g103660.2.1 (e_value=5e-47) genomic_reference:SL2.40ch01 gene_region:83970532-83977332 transcript_region:SL2.40ch01:83970532..83977332+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold (AHRD V1 *--- B0KN71_PSEPG)"; GO:0003824 NbS00009107g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|1|0.75|4|0|510; (*GB) gi|255576205|ref|XP_002528996.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94CC0|Y5994_ARATH (e_value=7e-177) Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1;; (*TAIR) AT4G24330.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1682) | chr4:12603848-12606229 REVERSE LENGTH=478;; (*ITAG) Solyc01g103680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83987525-83992704 transcript_region:SL2.40ch01:83987525..83992704- functional_description:"Coiled-coil domain containing 47 (AHRD V1 ***- Q0VBU4_MOUSE); contains Interpro domain(s) IPR012879 Protein of unknown function DUF1682 "; NbS00015388g0006.1 protein AED:0.06 eAED:0.06 QI:872|1|1|1|1|1|4|293|158; (*GB) gi|5051468|emb|CAB44983.1| (e_value=8e-113) putative preprocysteine proteinase [Nicotiana tabacum];; (*SWP) sp|Q10716|CYSP1_MAIZE (e_value=1e-84) Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=1e-81) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc04g080960.2.1 (e_value=2e-106) genomic_reference:SL2.40ch04 gene_region:62610006-62612431 transcript_region:SL2.40ch04:62610006..62612431+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00015388g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|0.5|0.33|3|8|346; (*GB) gi|119331576|gb|ABL63114.1| (e_value=2e-80) DNA-binding protein [Catharanthus roseus];; (*TAIR) AT3G51060.1 (e_value=1e-59) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc04g080970.2.1 (e_value=3e-117) genomic_reference:SL2.40ch04 gene_region:62620623-62622236 transcript_region:SL2.40ch04:62620623..62622236- functional_description:"Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00035228g0017.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.83|1|0.6|0.83|6|332|398; (*GB) gi|225428031|ref|XP_002278931.1| (e_value=0.0) PREDICTED: WD-40 repeat-containing protein MSI2 [Vitis vinifera];; (*SWP) sp|O22468|MSI2_ARATH (e_value=0.0) WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1;; (*TAIR) AT2G16780.1 (e_value=0.0) | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family protein / WD-40 repeat family protein | chr2:7281615-7283583 REVERSE LENGTH=415;; (*ITAG) Solyc01g111590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89573829-89576771 transcript_region:SL2.40ch01:89573829..89576771- go_terms:GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042393 NbS00035228g0013.1 protein AED:0.41 eAED:0.42 QI:182|1|0.5|1|1|1|2|0|155; (*GB) gi|15233937|ref|NP_195570.1| (e_value=3e-91) farnesylated protein 6 [Arabidopsis thaliana];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=1e-92) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G38580.1 (e_value=8e-94) | Symbols: ATFP6, HIPP26, FP6 | farnesylated protein 6 | chr4:18034596-18035693 FORWARD LENGTH=153;; (*ITAG) Solyc01g111600.2.1 (e_value=2e-105) genomic_reference:SL2.40ch01 gene_region:89577522-89580464 transcript_region:SL2.40ch01:89577522..89580464- go_terms:GO:0005515 functional_description:"Metal ion binding protein (AHRD V1 **-* D7MN12_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515 NbS00035228g0019.1 protein AED:0.18 eAED:0.23 QI:36|0.33|0.25|1|0|0.25|4|293|325; (*GB) gi|147768431|emb|CAN73631.1| (e_value=5e-107) hypothetical protein VITISV_026643 [Vitis vinifera];; (*TAIR) AT2G16770.1 (e_value=2e-84) | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249;; (*ITAG) Solyc01g111580.2.1 (e_value=2e-146) genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00035228g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc01g008090.2.1 (e_value=2e-13) genomic_reference:SL2.40ch01 gene_region:2223864-2226034 transcript_region:SL2.40ch01:2223864..2226034- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- Q3HVK9_SOLTU); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00035228g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|146 NbS00002284g0004.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|483; (*GB) gi|224091325|ref|XP_002309224.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O14638|ENPP3_HUMAN (e_value=1e-83) Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 OS=Homo sapiens GN=ENPP3 PE=1 SV=2;; (*TAIR) AT4G29680.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr4:14538067-14539557 REVERSE LENGTH=496;; (*ITAG) Solyc07g037960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:41661646-41663103 transcript_region:SL2.40ch07:41661646..41663103- go_terms:GO:0004767 functional_description:"Ectonucleotide pyrophosphatase/phosphodiesterase 1 (AHRD V1 **** B6SGJ5_MAIZE); contains Interpro domain(s) IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase "; GO:0004767 NbS00002284g0002.1 protein AED:0.30 eAED:0.30 QI:183|0.90|0.91|1|0.90|0.83|12|421|440; (*GB) gi|225444932|ref|XP_002282252.1| (e_value=0.0) PREDICTED: glutamate-rich WD repeat-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q54ED4|GRWD1_DICDI (e_value=1e-106) Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1;; (*TAIR) AT2G19540.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr2:8461804-8464347 FORWARD LENGTH=469;; (*ITAG) Solyc07g039200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:42919344-42923581 transcript_region:SL2.40ch07:42919344..42923581+ go_terms:GO:0042393 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 *--* GBB_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042393 NbS00002284g0017.1 protein AED:0.12 eAED:0.18 QI:0|0|0|1|0|0.25|4|0|538; (*GB) gi|224091325|ref|XP_002309224.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P22413|ENPP1_HUMAN (e_value=7e-71) Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 OS=Homo sapiens GN=ENPP1 PE=1 SV=2;; (*TAIR) AT4G29680.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr4:14538067-14539557 REVERSE LENGTH=496;; (*ITAG) Solyc07g037950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:41645404-41646858 transcript_region:SL2.40ch07:41645404..41646858- go_terms:GO:0004767 functional_description:"Ectonucleotide pyrophosphatase/phosphodiesterase 1 (AHRD V1 **** B6SGJ5_MAIZE); contains Interpro domain(s) IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase "; GO:0004767 NbS00002284g0016.1 protein AED:0.20 eAED:0.25 QI:200|0.66|0.71|1|0.83|0.71|7|0|405; (*GB) gi|225444936|ref|XP_002282302.1| (e_value=0.0) PREDICTED: PCI domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q5JVF3|PCID2_HUMAN (e_value=2e-57) PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2;; (*TAIR) AT2G19560.1 (e_value=0.0) | Symbols: EER5 | proteasome family protein | chr2:8465924-8469069 REVERSE LENGTH=413;; (*ITAG) Solyc07g039210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:42924002-42930110 transcript_region:SL2.40ch07:42924002..42930110- go_terms:GO:0005515,GO:0047499 functional_description:"PCI domain-containing protein 2 homolog (AHRD V1 **-- PCID2_DROME); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515,GO:0047499 NbS00002284g0115.1 protein AED:0.24 eAED:0.24 QI:80|1|1|1|0.66|0.75|4|314|202 NbS00002284g0103.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.85|1|1|7|0|525 NbS00044970g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|275; (*GB) gi|224094101|ref|XP_002310075.1| (e_value=3e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMY4|Y5316_ARATH (e_value=3e-19) Uncharacterized protein At5g23160 OS=Arabidopsis thaliana GN=At5g23160 PE=2 SV=1;; (*TAIR) AT5G08240.1 (e_value=4e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23160.1); Has 69 Blast hits to 69 proteins in 10 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2651382-2652336 REVERSE LENGTH=258; NbS00003095g0003.1 protein AED:0.62 eAED:0.70 QI:0|0.5|0|0.66|0|0|3|0|115; (*GB) gi|255575314|ref|XP_002528560.1| (e_value=3e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G15395.4 (e_value=5e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5201014-5201307 FORWARD LENGTH=59; NbS00023414g0004.1 protein AED:0.19 eAED:0.20 QI:0|0.55|0.5|0.9|0.55|0.6|10|0|291; (*GB) gi|225458762|ref|XP_002285097.1| (e_value=5e-107) PREDICTED: MADS-box transcription factor 3 [Vitis vinifera];; (*SWP) sp|Q6R4S6|CAL_BRARC (e_value=1e-27) Transcription factor CAULIFLOWER OS=Brassica rapa subsp. chinensis GN=CAL PE=2 SV=1;; (*TAIR) AT1G77980.1 (e_value=1e-43) | Symbols: AGL66 | AGAMOUS-like 66 | chr1:29315212-29317067 REVERSE LENGTH=332;; (*ITAG) Solyc04g078300.2.1 (e_value=6e-168) genomic_reference:SL2.40ch04 gene_region:60651560-60654995 transcript_region:SL2.40ch04:60651560..60654995+ go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00042625g0009.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|465; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00042625g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.92|0.84|1|1|0.92|26|0|1650; (*GB) gi|296082998|emb|CBI22299.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6KCD5|NIPBL_MOUSE (e_value=1e-101) Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1;; (*TAIR) AT5G15540.1 (e_value=0.0) | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846;; (*ITAG) Solyc03g059420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:27055070-27066970 transcript_region:SL2.40ch03:27055070..27066970+ go_terms:GO:0008270,GO:0005488 functional_description:"Sister chromatid cohesion 2 (AHRD V1 **-- D7M7D7_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00042625g0013.1 protein AED:0.15 eAED:0.15 QI:388|1|0.93|1|0.85|0.93|15|256|997; (*GB) gi|130173|sp|P04045.2|PHSL1_SOLTU (e_value=0.0) RecName: Full=Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L-1; Flags: Precursor;; (*SWP) sp|P04045|PHSL1_SOLTU (e_value=0.0) Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G29320.1 (e_value=0.0) | Symbols: | Glycosyl transferase, family 35 | chr3:11252871-11257587 FORWARD LENGTH=962;; (*ITAG) Solyc03g065340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:38799475-38808273 transcript_region:SL2.40ch03:38799475..38808273+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9SJB6_RICCO); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00014128g0016.1 protein AED:0.04 eAED:0.03 QI:0|0.8|0.5|0.83|1|1|6|233|815; (*GB) gi|357120026|ref|XP_003561732.1| (e_value=0.0) PREDICTED: transcription factor bHLH140-like [Brachypodium distachyon];; (*SWP) sp|Q9M041|BH140_ARATH (e_value=0.0) Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1;; (*TAIR) AT5G01310.1 (e_value=0.0) | Symbols: APTX | APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912;; (*ITAG) Solyc09g005100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59939-64049 transcript_region:SL2.40ch09:59939..64049+ go_terms:GO:0003700,GO:0047627 functional_description:"Aprataxin (AHRD V1 *--- B1AXX8_MOUSE); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003700,GO:0047627 NbS00014128g0020.1 protein AED:0.25 eAED:0.30 QI:0|0.33|0|1|0.16|0.14|7|0|397; (*GB) gi|60656565|gb|AAX33300.1| (e_value=5e-99) pyruvate decarboxylase 1 [Petunia x hybrida];; (*SWP) sp|Q10MW3|PDC2_ORYSJ (e_value=3e-88) Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1;; (*TAIR) AT5G01320.1 (e_value=1e-99) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr5:129484-131625 REVERSE LENGTH=603;; (*ITAG) Solyc09g005110.2.1 (e_value=2e-115) genomic_reference:SL2.40ch09 gene_region:64195-66676 transcript_region:SL2.40ch09:64195..66676- go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase 1 (AHRD V1 **** Q84V95_LOTCO); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00014128g0018.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|3|0|977; (*GB) gi|34761800|gb|AAQ82053.1| (e_value=0.0) verticillium wilt disease resistance protein precursor [Solanum torvum];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-64) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT1G47890.1 (e_value=9e-101) | Symbols: AtRLP7, RLP7 | receptor like protein 7 | chr1:17643976-17647035 FORWARD LENGTH=1019;; (*ITAG) Solyc09g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:48645-52064 transcript_region:SL2.40ch09:48645..52064- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00010052g0001.1 protein AED:0.27 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|225424977|ref|XP_002266182.1| (e_value=3e-34) PREDICTED: uncharacterized protein At5g01610 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=2e-18) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT2G03350.1 (e_value=6e-30) | Symbols: | Protein of unknown function, DUF538 | chr2:1019733-1021071 REVERSE LENGTH=179;; (*ITAG) Solyc03g115640.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:59336449-59338341 transcript_region:SL2.40ch03:59336449..59338341+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00013935g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|389; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=9e-42) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=1e-20) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=1e-21) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=2e-172) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00031192g0005.1 protein AED:0.09 eAED:0.09 QI:369|1|0.85|1|0.83|0.71|7|0|606; (*GB) gi|359490578|ref|XP_002275623.2| (e_value=0.0) PREDICTED: S-type anion channel SLAH3-like [Vitis vinifera];; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=0.0) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=0.0) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc03g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2317854-2320686 transcript_region:SL2.40ch03:2317854..2320686+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00013149g0010.1 protein AED:0.11 eAED:0.12 QI:450|0.66|0.75|1|0.66|0.75|4|288|629; (*GB) gi|255549776|ref|XP_002515939.1| (e_value=2e-155) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=1e-58) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT1G52080.1 (e_value=1e-96) | Symbols: AR791 | actin binding protein family | chr1:19369788-19371862 FORWARD LENGTH=573;; (*ITAG) Solyc06g062400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35755674-35758392 transcript_region:SL2.40ch06:35755674..35758392+ go_terms:GO:0003779 functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; GO:0003779 NbS00013149g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|133; (*GB) gi|14423866|sp|Q9ST98.1|PROF3_TOBAC (e_value=2e-80) RecName: Full=Profilin-3;; (*SWP) sp|Q9ST98|PROF3_TOBAC (e_value=5e-82) Profilin-3 OS=Nicotiana tabacum GN=PRO3 PE=2 SV=1;; (*TAIR) AT2G19770.1 (e_value=2e-67) | Symbols: PRF5 | profilin 5 | chr2:8519885-8521119 REVERSE LENGTH=134;; (*ITAG) Solyc12g044630.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45135507-45136150 transcript_region:SL2.40ch12:45135507..45136150+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q9SMC0_TOBAC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00013149g0012.1 protein AED:0.06 eAED:0.06 QI:667|1|1|1|0.77|0.7|10|237|229; (*GB) gi|356522820|ref|XP_003530041.1| (e_value=3e-135) PREDICTED: inositol oxygenase 1-like [Glycine max];; (*SWP) sp|Q8L799|MIOX1_ARATH (e_value=7e-136) Inositol oxygenase 1 OS=Arabidopsis thaliana GN=MIOX1 PE=2 SV=1;; (*TAIR) AT1G14520.2 (e_value=5e-137) | Symbols: MIOX1 | myo-inositol oxygenase 1 | chr1:4968376-4969954 REVERSE LENGTH=309;; (*ITAG) Solyc06g062430.2.1 (e_value=4e-148) genomic_reference:SL2.40ch06 gene_region:35766631-35770051 transcript_region:SL2.40ch06:35766631..35770051- go_terms:GO:0050113 functional_description:"Inositol oxygenase (AHRD V1 **** A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0050113 NbS00062145g0003.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|1|1|2|0|139; (*GB) gi|224131574|ref|XP_002321121.1| (e_value=3e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21710.2 (e_value=1e-20) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:7648380-7649533 FORWARD LENGTH=211;; (*ITAG) Solyc07g052460.2.1 (e_value=4e-38) genomic_reference:SL2.40ch07 gene_region:58273857-58275345 transcript_region:SL2.40ch07:58273857..58275345+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 ***- Q9LSZ3_ARATH)"; NbS00058699g0006.1 protein AED:0.20 eAED:0.23 QI:0|0|0|0.5|0|0.25|4|0|661; (*GB) gi|225452588|ref|XP_002280912.1| (e_value=7e-113) PREDICTED: uncharacterized protein LOC100252487 [Vitis vinifera];; (*SWP) sp|Q9SI03|MTP12_ARATH (e_value=9e-67) Metal tolerance protein 12 OS=Arabidopsis thaliana GN=MTP12 PE=2 SV=1;; (*TAIR) AT2G04620.1 (e_value=8e-94) | Symbols: | Cation efflux family protein | chr2:1610506-1612902 REVERSE LENGTH=798;; (*ITAG) Solyc02g067620.1.1 (e_value=3e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32329353-32332061 transcript_region:SL2.40ch02:32329353..32332061- go_terms:GO:0016020 functional_description:"Zinc transporter like 1 (AHRD V1 *-*- Q9JKN2_MOUSE); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00062165g0006.1 protein AED:0.08 eAED:0.08 QI:238|0.5|0.6|1|0.25|0.6|5|228|214; (*GB) gi|225447019|ref|XP_002268886.1| (e_value=1e-92) PREDICTED: (+)-pulegone reductase [Vitis vinifera];; (*SWP) sp|Q39172|P1_ARATH (e_value=5e-37) NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1;; (*TAIR) AT5G16980.1 (e_value=5e-40) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5579202-5580383 REVERSE LENGTH=239;; (*ITAG) Solyc07g045090.2.1 (e_value=8e-111) genomic_reference:SL2.40ch07 gene_region:55529949-55531720 transcript_region:SL2.40ch07:55529949..55531720+ go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D2QM87_SPILD); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00062165g0002.1 protein AED:0.13 eAED:0.62 QI:173|0|0.5|1|0|0.5|2|0|75 NbS00004429g0003.1 protein AED:0.12 eAED:0.22 QI:289|0|0.5|1|0|0.5|2|0|254; (*GB) gi|225441862|ref|XP_002284216.1| (e_value=1e-75) PREDICTED: heat stress transcription factor B-3-like [Vitis vinifera];; (*SWP) sp|O22230|HSFB3_ARATH (e_value=4e-37) Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1;; (*TAIR) AT2G41690.1 (e_value=3e-38) | Symbols: AT-HSFB3, HSFB3 | heat shock transcription factor B3 | chr2:17381723-17382577 FORWARD LENGTH=244;; (*ITAG) Solyc04g016000.2.1 (e_value=6e-90) genomic_reference:SL2.40ch04 gene_region:6594909-6598451 transcript_region:SL2.40ch04:6594909..6598451- go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 ***- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00001641g0014.1 protein AED:0.04 eAED:0.04 QI:187|0.75|0.77|1|0.62|0.66|9|288|613; (*GB) gi|255551022|ref|XP_002516559.1| (e_value=0.0) protein transporter, putative [Ricinus communis];; (*SWP) sp|Q99LI8|HGS_MOUSE (e_value=1e-21) Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2;; (*TAIR) AT4G32760.1 (e_value=1e-127) | Symbols: | ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=675;; (*ITAG) Solyc11g071270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51884449-51892282 transcript_region:SL2.40ch11:51884449..51892282- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00001641g0013.1 protein AED:0.02 eAED:0.02 QI:257|0.83|0.71|1|1|1|7|196|1172; (*GB) gi|224092306|ref|XP_002309551.1| (e_value=2e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11530.1 (e_value=4e-11) | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:3697140-3700930 FORWARD LENGTH=1096;; (*ITAG) Solyc11g071250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51865253-51870977 transcript_region:SL2.40ch11:51865253..51870977- functional_description:"EMBYO FLOWERING 1-like protein (Fragment) (AHRD V1 *-*- Q52ZP2_PEA)"; NbS00001641g0012.1 protein AED:0.19 eAED:0.22 QI:0|0|0.33|0.66|0|0.33|3|612|68 NbS00007782g0002.1 protein AED:0.17 eAED:0.17 QI:273|0|0.66|1|0|0.33|3|61|110; (*GB) gi|225461271|ref|XP_002284268.1| (e_value=5e-46) PREDICTED: calcium-binding protein PBP1 [Vitis vinifera];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=5e-30) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=3e-31) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc10g006740.2.1 (e_value=3e-58) genomic_reference:SL2.40ch10 gene_region:1199169-1200625 transcript_region:SL2.40ch10:1199169..1200625+ go_terms:GO:0031683 functional_description:"Centrin 2 (Fragment) (AHRD V1 **-- Q4U4N2_PIG); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00007782g0003.1 protein AED:0.31 eAED:0.72 QI:0|0|0|1|1|1|2|0|197; (*ITAG) Solyc06g011460.1.1 (e_value=9e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbC25469554g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|308229874|gb|ADO24345.1| (e_value=2e-77) cytochrome P450 A [Capsicum annuum];; (*SWP) sp|O81117|C94A1_VICSA (e_value=2e-35) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT3G48520.1 (e_value=1e-52) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc03g111300.1.1 (e_value=1e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55969688-55971163 transcript_region:SL2.40ch03:55969688..55971163+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00023358g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.42|0.66|0.85|7|0|226; (*GB) gi|350539303|ref|NP_001234386.1| (e_value=7e-57) L19 ribosomal protein-like [Solanum lycopersicum];; (*SWP) sp|P82413|RK19_SPIOL (e_value=7e-33) 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2;; (*TAIR) AT4G11630.1 (e_value=6e-54) | Symbols: | Ribosomal protein L19 family protein | chr4:7019793-7021068 FORWARD LENGTH=225;; (*ITAG) Solyc01g008340.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:2463094-2470694 transcript_region:SL2.40ch01:2463094..2470694+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L19 (AHRD V1 *-*- B6T8M1_MAIZE); contains Interpro domain(s) IPR001857 Ribosomal protein L19 "; GO:0005840 NbS00032463g0007.1 protein AED:0.17 eAED:0.17 QI:362|0.73|0.62|1|0.73|0.68|16|0|1458; (*GB) gi|356505072|ref|XP_003521316.1| (e_value=0.0) PREDICTED: ABC transporter C family member 5-like [Glycine max];; (*SWP) sp|Q9M1C7|AB9C_ARATH (e_value=0.0) ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2;; (*TAIR) AT3G60160.1 (e_value=0.0) | Symbols: ATMRP9, MRP9, ABCC9 | multidrug resistance-associated protein 9 | chr3:22223829-22229195 REVERSE LENGTH=1506;; (*ITAG) Solyc09g064440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57309683-57320332 transcript_region:SL2.40ch09:57309683..57320332+ go_terms:GO:0015431 functional_description:"ABC transporter C family member 5 (AHRD V1 **-- AB5C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00007903g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|74 NbC24057400g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|83; (*GB) gi|224287039|gb|ACN41220.1| (e_value=3e-42) unknown [Picea sitchensis];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=9e-25) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G51120.1 (e_value=8e-43) | Symbols: PABN1, ATPABN1 | polyadenylate-binding protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227;; (*ITAG) Solyc03g094080.2.1 (e_value=1e-44) genomic_reference:SL2.40ch03 gene_region:49237600-49251473 transcript_region:SL2.40ch03:49237600..49251473- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00016757g0011.1 protein AED:0.18 eAED:0.20 QI:0|0.62|0.52|0.96|0.75|0.76|25|0|1902; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*SWP) sp|F4I096|MED13_ARATH (e_value=0.0) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.2 (e_value=0.0) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20647714 FORWARD LENGTH=2001;; (*ITAG) Solyc04g039950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00018018g0008.1 protein AED:0.11 eAED:0.11 QI:54|0.92|1|1|1|1|14|145|512; (*GB) gi|225469630|ref|XP_002264320.1| (e_value=0.0) PREDICTED: EH domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q641Z6|EHD1_RAT (e_value=2e-153) EH domain-containing protein 1 OS=Rattus norvegicus GN=Ehd1 PE=1 SV=1;; (*TAIR) AT4G05520.1 (e_value=0.0) | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 | chr4:2804522-2807833 FORWARD LENGTH=546;; (*ITAG) Solyc11g012020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4963724-4968395 transcript_region:SL2.40ch11:4963724..4968395+ go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **-* B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00018018g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|483; (*GB) gi|224141167|ref|XP_002323946.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64360.1 (e_value=1e-25) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=422;; (*ITAG) Solyc11g006170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:918328-920277 transcript_region:SL2.40ch11:918328..920277- go_terms:GO:0016021,GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0016021,GO:0031072 NbS00018018g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0.14|0.57|1|1|7|2426|170; (*GB) gi|68299229|emb|CAJ13715.1| (e_value=6e-35) putative replication factor A [Capsicum chinense];; (*ITAG) Solyc10g081830.1.1 (e_value=8e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62125511-62129586 transcript_region:SL2.40ch10:62125511..62129586+ go_terms:GO:0003676 functional_description:"Replication protein A subunit (AHRD V1 ***- B6T3L8_MAIZE); contains Interpro domain(s) IPR014646 Replication protein A, subunit RPA32 "; GO:0003676 NbS00023227g0001.1 protein AED:0.16 eAED:0.20 QI:0|0|0|1|1|1|4|0|1324; (*GB) gi|225437318|ref|XP_002267274.1| (e_value=0.0) PREDICTED: translocase of chloroplast 159, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O81283|TC159_ARATH (e_value=0.0) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=0.0) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc01g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72526370-72529831 transcript_region:SL2.40ch01:72526370..72529831+ go_terms:GO:0004888 functional_description:"Translocase of chloroplast 34 (AHRD V1 *-*- B6TBT7_MAIZE); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0004888 NbS00023227g0010.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.45|1|0.5|0.45|11|45|796; (*GB) gi|255574532|ref|XP_002528177.1| (e_value=1e-113) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G80000.2 (e_value=3e-25) | Symbols: | CASC3/Barentsz eIF4AIII binding | chr1:30093195-30096742 FORWARD LENGTH=605;; (*ITAG) Solyc03g120300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62789061-62795056 transcript_region:SL2.40ch03:62789061..62795056+ functional_description:"Glycine-rich protein-like (AHRD V1 ***- Q5ZB64_ORYSJ); contains Interpro domain(s) IPR018545 CASC3/Barentsz eIF4AIII binding "; NbS00004600g0004.1 protein AED:0.05 eAED:0.05 QI:64|0.77|0.3|1|0.88|0.9|10|0|1083; (*GB) gi|296088688|emb|CBI38138.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=9e-39) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT1G34260.1 (e_value=3e-92) | Symbols: FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A | chr1:12485967-12491799 FORWARD LENGTH=1456;; (*ITAG) Solyc06g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37308987-37316738 transcript_region:SL2.40ch06:37308987..37316738- go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7KK53_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbS00025205g0022.1 protein AED:0.09 eAED:0.09 QI:242|1|0.88|1|1|1|9|555|311; (*GB) gi|356523245|ref|XP_003530251.1| (e_value=1e-132) PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=1e-118) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.1 (e_value=2e-123) | Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290;; (*ITAG) Solyc06g068670.2.1 (e_value=2e-178) genomic_reference:SL2.40ch06 gene_region:38958670-38961543 transcript_region:SL2.40ch06:38958670..38961543- functional_description:"Unknown Protein (AHRD V1)"; NbS00025205g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|255539989|ref|XP_002511059.1| (e_value=1e-60) respiratory burst oxidase, putative [Ricinus communis];; (*SWP) sp|O81210|RBOHC_ARATH (e_value=4e-59) Respiratory burst oxidase homolog protein C OS=Arabidopsis thaliana GN=RBOHC PE=2 SV=2;; (*TAIR) AT5G51060.1 (e_value=3e-60) | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory burst oxidase protein D | chr5:20757484-20762175 REVERSE LENGTH=905;; (*ITAG) Solyc03g117980.2.1 (e_value=4e-60) genomic_reference:SL2.40ch03 gene_region:61025937-61031702 transcript_region:SL2.40ch03:61025937..61031702+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00025205g0016.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.57|1|1|1|7|642|508; (*GB) gi|350539281|ref|NP_001234129.1| (e_value=5e-120) calnexin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|Q39817|CALX_SOYBN (e_value=3e-104) Calnexin homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G61790.1 (e_value=3e-104) | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530;; (*ITAG) Solyc06g068700.2.1 (e_value=2e-125) genomic_reference:SL2.40ch06 gene_region:38979365-38982564 transcript_region:SL2.40ch06:38979365..38982564- go_terms:GO:0005509 functional_description:"Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR001580 Calreticulin/calnexin "; GO:0005509 NbS00025205g0024.1 protein AED:0.09 eAED:0.09 QI:0|0.71|0.5|1|0.85|0.87|8|0|574; (*GB) gi|350539281|ref|NP_001234129.1| (e_value=0.0) calnexin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|Q39817|CALX_SOYBN (e_value=0.0) Calnexin homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G61790.1 (e_value=0.0) | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827394-24829642 REVERSE LENGTH=530;; (*ITAG) Solyc03g118040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61077682-61081165 transcript_region:SL2.40ch03:61077682..61081165- go_terms:GO:0005509 functional_description:"Calcium-binding protein Calnexin (AHRD V1 **-* Q9BLH3_HALRO); contains Interpro domain(s) IPR018124 Calreticulin/calnexin, conserved site IPR001580 Calreticulin/calnexin "; GO:0005509 NbS00025205g0023.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.46|0.84|0.58|0.69|13|0|585; (*GB) gi|27529830|dbj|BAC53930.1| (e_value=0.0) amidase-like protein [Nicotiana tabacum];; (*SWP) sp|B2V855|GATA_SULSY (e_value=5e-43) Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1;; (*TAIR) AT5G07360.1 (e_value=0.0) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659;; (*ITAG) Solyc06g068690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38974327-38979215 transcript_region:SL2.40ch06:38974327..38979215+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A3HSJ3_9BACT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00008670g0008.1 protein AED:0.82 eAED:0.93 QI:0|0|0|0.4|1|1|5|0|201 NbS00008670g0011.1 protein AED:0.00 eAED:0.00 QI:205|1|1|1|1|1|4|404|187; (*GB) gi|359488731|ref|XP_002275276.2| (e_value=6e-43) PREDICTED: uncharacterized protein LOC100264617 [Vitis vinifera];; (*TAIR) AT5G14910.1 (e_value=8e-40) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:4823815-4825196 FORWARD LENGTH=178;; (*ITAG) Solyc02g087150.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:44221975-44225097 transcript_region:SL2.40ch02:44221975..44225097+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein (AHRD V1 *-*- D7M6P1_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00008670g0010.1 protein AED:0.19 eAED:0.20 QI:338|0.68|0.58|1|0.62|0.70|17|202|976; (*GB) gi|359488864|ref|XP_003633835.1| (e_value=0.0) PREDICTED: GPI ethanolamine phosphate transferase 1-like [Vitis vinifera];; (*SWP) sp|Q2U0S9|MCD4_ASPOR (e_value=9e-170) GPI ethanolamine phosphate transferase 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mcd4 PE=3 SV=1;; (*TAIR) AT3G01380.1 (e_value=0.0) | Symbols: | transferases;sulfuric ester hydrolases;catalytics;transferases | chr3:144288-149828 REVERSE LENGTH=993;; (*ITAG) Solyc02g087170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44230971-44235207 transcript_region:SL2.40ch02:44230971..44235207+ go_terms:GO:0005789 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 ***- C1GMZ7_PARBD); contains Interpro domain(s) IPR017852 GPI ethanolamine phosphate transferase 1, C-terminal "; GO:0005789 NbS00008670g0009.1 protein AED:0.22 eAED:0.22 QI:436|0.76|0.64|0.92|0.61|0.42|14|0|367; (*GB) gi|356558083|ref|XP_003547338.1| (e_value=5e-144) PREDICTED: uncharacterized protein LOC100799456 [Glycine max];; (*TAIR) AT1G04900.1 (e_value=1e-131) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=6e-145) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00014124g0001.1 protein AED:0.04 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|213; (*ITAG) Solyc04g071850.1.1 (e_value=1e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56450970-56451551 transcript_region:SL2.40ch04:56450970..56451551- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00014124g0007.1 protein AED:0.23 eAED:0.23 QI:418|0.6|0.66|0.83|1|1|6|334|414; (*GB) gi|255566660|ref|XP_002524314.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=5e-164) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=4e-165) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc04g071860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56452439-56466548 transcript_region:SL2.40ch04:56452439..56466548- go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase AKR1 (AHRD V1 *-*- AKR1_CRYNE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00059957g0004.1 protein AED:0.36 eAED:0.36 QI:164|1|0.6|1|0.75|0.6|5|0|141; (*GB) gi|225465502|ref|XP_002272092.1| (e_value=1e-67) PREDICTED: 40S ribosomal protein S12-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9XHS0|RS12_HORVU (e_value=5e-65) 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1;; (*TAIR) AT2G32060.2 (e_value=2e-56) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144;; (*ITAG) Solyc03g083290.2.1 (e_value=3e-75) genomic_reference:SL2.40ch03 gene_region:46671690-46674425 transcript_region:SL2.40ch03:46671690..46674425+ go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S12 (AHRD V1 ***- A9P9K3_POPTR); contains Interpro domain(s) IPR000530 Ribosomal protein S12e "; GO:0003735,GO:0003723 NbS00059957g0005.1 protein AED:0.10 eAED:0.15 QI:26|0|0|0.66|0|0|3|0|306; (*GB) gi|356531044|ref|XP_003534088.1| (e_value=7e-113) PREDICTED: retinol dehydrogenase 11-like [Glycine max];; (*SWP) sp|Q96NR8|RDH12_HUMAN (e_value=5e-22) Retinol dehydrogenase 12 OS=Homo sapiens GN=RDH12 PE=1 SV=3;; (*TAIR) AT4G27760.1 (e_value=1e-93) | Symbols: FEY, FEY3 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13844151-13846563 FORWARD LENGTH=376;; (*ITAG) Solyc12g042640.1.1 (e_value=2e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:43446795-43447886 transcript_region:SL2.40ch12:43446795..43447886+ go_terms:GO:0004745,GO:0046983 functional_description:"Retinol dehydrogenase 13 (AHRD V1 **-* B5UAY9_CYPCA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745,GO:0046983 NbS00008717g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|0|315; (*GB) gi|224099737|ref|XP_002311599.1| (e_value=2e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|P40973|PLY_LILLO (e_value=4e-132) Pectate lyase OS=Lilium longiflorum PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=1e-131) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc01g010740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5778009-5781979 transcript_region:SL2.40ch01:5778009..5781979- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00008717g0002.1 protein AED:0.31 eAED:0.31 QI:52|0.75|0.66|1|1|1|9|0|452; (*GB) gi|359488976|ref|XP_003633850.1| (e_value=0.0) PREDICTED: serine carboxypeptidase-like 46-like [Vitis vinifera];; (*SWP) sp|Q8VY01|SCP46_ARATH (e_value=1e-113) Serine carboxypeptidase-like 46 OS=Arabidopsis thaliana GN=SCPL46 PE=2 SV=1;; (*TAIR) AT2G33530.1 (e_value=9e-115) | Symbols: scpl46 | serine carboxypeptidase-like 46 | chr2:14197866-14200536 REVERSE LENGTH=465;; (*ITAG) Solyc01g010710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5740284-5746099 transcript_region:SL2.40ch01:5740284..5746099- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6U0V5_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00008717g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|6|0|240; (*GB) gi|296082865|emb|CBI22166.3| (e_value=2e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VY01|SCP46_ARATH (e_value=8e-56) Serine carboxypeptidase-like 46 OS=Arabidopsis thaliana GN=SCPL46 PE=2 SV=1;; (*TAIR) AT2G33530.1 (e_value=6e-57) | Symbols: scpl46 | serine carboxypeptidase-like 46 | chr2:14197866-14200536 REVERSE LENGTH=465;; (*ITAG) Solyc01g010710.2.1 (e_value=3e-139) genomic_reference:SL2.40ch01 gene_region:5740284-5746099 transcript_region:SL2.40ch01:5740284..5746099- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6U0V5_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00040799g0001.1 protein AED:0.24 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|127; (*ITAG) Solyc11g020320.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10842641-10843468 transcript_region:SL2.40ch11:10842641..10843468- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRQ1_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00040799g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|147 NbS00046845g0001.1 protein AED:0.44 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|74; (*GB) gi|255563171|ref|XP_002522589.1| (e_value=6e-19) hypothetical protein RCOM_0971700 [Ricinus communis];; (*SWP) sp|P18260|ATPAM_HELAN (e_value=6e-19) ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=3e-18) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc11g039980.1.1 (e_value=3e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbC25835223g0004.1 protein AED:0.73 eAED:0.87 QI:87|0|0|0.6|1|1|5|0|248; (*GB) gi|356525423|ref|XP_003531324.1| (e_value=3e-90) PREDICTED: uncharacterized protein At3g49055-like [Glycine max];; (*TAIR) AT1G24560.1 (e_value=3e-69) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). | chr1:8702644-8705640 FORWARD LENGTH=678;; (*ITAG) Solyc05g013780.2.1 (e_value=4e-127) genomic_reference:SL2.40ch05 gene_region:7090546-7096093 transcript_region:SL2.40ch05:7090546..7096093+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026293g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|200; (*GB) gi|224131160|ref|XP_002328469.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=3e-13) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g005890.1.1 (e_value=7e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:710226-711943 transcript_region:SL2.40ch11:710226..711943- go_terms:GO:0005975 functional_description:"Chitinase A (AHRD V1 ***- C7G3I3_EQUAR); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00005405g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.75|1|1|1|4|25|202; (*GB) gi|359496236|ref|XP_003635187.1| (e_value=5e-39) PREDICTED: transcription factor DYSFUNCTIONAL TAPETUM 1-like [Vitis vinifera];; (*SWP) sp|O81900|DYT1_ARATH (e_value=9e-27) Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1;; (*TAIR) AT4G21330.1 (e_value=7e-28) | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:11349922-11350694 FORWARD LENGTH=207;; (*ITAG) Solyc02g079810.1.1 (e_value=8e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38818280-38819281 transcript_region:SL2.40ch02:38818280..38819281- go_terms:GO:0003700 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005405g0015.1 protein AED:0.11 eAED:0.17 QI:1243|0|0.66|1|0|0.66|3|172|166 NbS00005405g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|297735888|emb|CBI18657.3| (e_value=4e-66) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G61667.1 (e_value=3e-56) | Symbols: | Protein of unknown function, DUF538 | chr1:22767674-22768269 FORWARD LENGTH=156;; (*ITAG) Solyc02g079790.2.1 (e_value=1e-91) genomic_reference:SL2.40ch02 gene_region:38814499-38815447 transcript_region:SL2.40ch02:38814499..38815447+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00005405g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|294; (*GB) gi|255555103|ref|XP_002518589.1| (e_value=1e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G11440.1 (e_value=8e-11) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 19337 Blast hits to 8589 proteins in 488 species: Archae - 26; Bacteria - 641; Metazoa - 7852; Fungi - 2167; Plants - 955; Viruses - 616; Other Eukaryotes - 7080 (source: NCBI BLink). | chr1:3849418-3850509 FORWARD LENGTH=363;; (*ITAG) Solyc02g079780.1.1 (e_value=3e-109) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:38808718-38809695 transcript_region:SL2.40ch02:38808718..38809695+ functional_description:"Pro-resilin (AHRD V1 *--- B6T4Q5_MAIZE)"; NbS00005405g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.4|0.8|1|1|5|0|217; (*GB) gi|6014904|sp|Q38732.1|DAG_ANTMA (e_value=3e-87) RecName: Full=DAG protein, chloroplastic; Flags: Precursor;; (*SWP) sp|Q38732|DAG_ANTMA (e_value=9e-89) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT1G11430.1 (e_value=3e-88) | Symbols: | plastid developmental protein DAG, putative | chr1:3847273-3848938 FORWARD LENGTH=232;; (*ITAG) Solyc02g079770.2.1 (e_value=4e-108) genomic_reference:SL2.40ch02 gene_region:38805497-38807567 transcript_region:SL2.40ch02:38805497..38807567+ functional_description:"DAG protein (AHRD V1 ***- B6TYI4_MAIZE)"; NbS00001244g0007.1 protein AED:0.16 eAED:0.16 QI:42|0.84|0.64|1|1|1|14|332|500; (*GB) gi|302144021|emb|CBI23126.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WVL7|GOGC5_ARATH (e_value=0.0) Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1;; (*TAIR) AT1G79830.3 (e_value=0.0) | Symbols: GC5 | golgin candidate 5 | chr1:30028110-30033508 REVERSE LENGTH=956;; (*ITAG) Solyc06g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38239615-38254781 transcript_region:SL2.40ch06:38239615..38254781- go_terms:GO:0005515 functional_description:"TATA element modulatory factor 1 (AHRD V1 *--- Q6DEI1_DANRE)"; GO:0005515 NbS00001244g0010.1 protein AED:0.27 eAED:0.27 QI:272|0.86|0.81|0.93|0.73|0.62|16|0|505; (*GB) gi|224054374|ref|XP_002298228.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2V4B9|PLST3_ARATH (e_value=0.0) Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2;; (*TAIR) AT1G79820.2 (e_value=0.0) | Symbols: SGB1 | Major facilitator superfamily protein | chr1:30022581-30026771 REVERSE LENGTH=495;; (*ITAG) Solyc06g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38231924-38238976 transcript_region:SL2.40ch06:38231924..38238976- go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 **** GTR3_CANFA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00017657g0006.1 protein AED:0.04 eAED:0.04 QI:106|0.83|0.71|1|0.83|0.85|7|266|899; (*GB) gi|296089567|emb|CBI39386.3| (e_value=2e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23740.1 (e_value=1e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14120.1); Has 155 Blast hits to 130 proteins in 48 species: Archae - 0; Bacteria - 16; Metazoa - 19; Fungi - 48; Plants - 47; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:8552077-8554730 REVERSE LENGTH=566;; (*ITAG) Solyc09g092510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66920991-66924952 transcript_region:SL2.40ch09:66920991..66924952+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017657g0002.1 protein AED:0.01 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|540; (*GB) gi|20146093|dbj|BAB88935.1| (e_value=0.0) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|O23406|U75D1_ARATH (e_value=1e-133) UDP-glycosyltransferase 75D1 OS=Arabidopsis thaliana GN=UGT75D1 PE=2 SV=2;; (*TAIR) AT4G15550.1 (e_value=1e-134) | Symbols: IAGLU | indole-3-acetate beta-D-glucosyltransferase | chr4:8877877-8879301 REVERSE LENGTH=474;; (*ITAG) Solyc09g092500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66917189-66918601 transcript_region:SL2.40ch09:66917189..66918601+ go_terms:GO:0080018 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080018 NbS00013556g0012.1 protein AED:0.21 eAED:0.21 QI:127|1|0.83|1|0.8|0.66|6|229|362; (*GB) gi|359495550|ref|XP_003635018.1| (e_value=4e-126) PREDICTED: uncharacterized protein LOC100853436 [Vitis vinifera];; (*SWP) sp|O74503|UAF30_SCHPO (e_value=2e-17) Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1;; (*TAIR) AT4G22360.1 (e_value=2e-109) | Symbols: | SWIB complex BAF60b domain-containing protein | chr4:11807811-11809660 FORWARD LENGTH=385;; (*ITAG) Solyc11g012290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5148298-5151054 transcript_region:SL2.40ch11:5148298..5151054+ functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 *-*- B6TD34_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00013556g0009.1 protein AED:0.05 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|211; (*GB) gi|225470000|ref|XP_002278144.1| (e_value=7e-68) PREDICTED: uncharacterized protein LOC100257020 [Vitis vinifera];; (*TAIR) AT5G20130.1 (e_value=8e-41) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6797485-6798700 FORWARD LENGTH=202;; (*ITAG) Solyc11g012280.1.1 (e_value=4e-91) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5141697-5145240 transcript_region:SL2.40ch11:5141697..5145240- functional_description:"Unknown Protein (AHRD V1)"; NbS00013556g0019.1 protein AED:0.12 eAED:0.14 QI:0|0.33|0.25|1|0|0|4|103|217; (*GB) gi|255559074|ref|XP_002520559.1| (e_value=2e-24) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g012300.1.1 (e_value=2e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5151946-5153449 transcript_region:SL2.40ch11:5151946..5153449- functional_description:"Unknown Protein (AHRD V1)"; NbS00013556g0013.1 protein AED:0.20 eAED:0.20 QI:0|1|0.83|1|0.8|0.66|6|360|264; (*GB) gi|89473698|gb|ABD72661.1| (e_value=8e-132) pollen tube RhoGDI2 [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=1e-104) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=1e-105) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc11g012270.1.1 (e_value=4e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5136039-5138781 transcript_region:SL2.40ch11:5136039..5138781- go_terms:GO:0005737 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 ***- Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005737 NbC24207793g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|255764587|gb|ACU33853.1| (e_value=6e-43) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=7e-24) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=5e-25) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=5e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00034210g0002.1 protein AED:0.11 eAED:0.11 QI:150|1|1|1|0|0|4|181|371; (*GB) gi|225446239|ref|XP_002263728.1| (e_value=1e-160) PREDICTED: ADIPOR-like receptor CG5315-like [Vitis vinifera];; (*SWP) sp|Q86V24|ADR2_HUMAN (e_value=1e-41) Adiponectin receptor protein 2 OS=Homo sapiens GN=ADIPOR2 PE=1 SV=1;; (*TAIR) AT5G20270.1 (e_value=1e-129) | Symbols: HHP1 | heptahelical transmembrane protein1 | chr5:6841025-6842656 REVERSE LENGTH=332;; (*ITAG) Solyc07g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2454357-2457432 transcript_region:SL2.40ch07:2454357..2457432+ go_terms:GO:0046872 functional_description:"Adiponectin receptor (AHRD V1 ***- Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0046872 NbS00023391g0004.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|359490223|ref|XP_002271208.2| (e_value=3e-29) PREDICTED: transcription factor bHLH120-like [Vitis vinifera];; (*SWP) sp|Q9STJ7|BH118_ARATH (e_value=2e-23) Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118 PE=2 SV=1;; (*TAIR) AT4G25400.1 (e_value=1e-24) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:12981295-12982335 FORWARD LENGTH=163;; (*ITAG) Solyc03g006910.2.1 (e_value=5e-29) genomic_reference:SL2.40ch03 gene_region:1472793-1474660 transcript_region:SL2.40ch03:1472793..1474660- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 **** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00023391g0108.1 protein AED:0.12 eAED:0.20 QI:35|0|0.33|1|0.5|0.33|3|0|274 NbS00023391g0109.1 protein AED:0.25 eAED:0.25 QI:889|1|1|1|1|1|7|363|441 NbS00019017g0007.1 protein AED:0.51 eAED:0.51 QI:0|0.6|0.5|0.66|0.4|0.66|6|0|156; (*GB) gi|224100961|ref|XP_002312086.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42540|UBC7_ARATH (e_value=2e-73) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1;; (*TAIR) AT5G59300.1 (e_value=3e-74) | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919868-23921304 REVERSE LENGTH=203;; (*ITAG) Solyc05g054540.2.1 (e_value=2e-79) genomic_reference:SL2.40ch05 gene_region:63586295-63589962 transcript_region:SL2.40ch05:63586295..63589962+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00025413g0004.1 protein AED:0.01 eAED:0.01 QI:129|1|1|1|1|1|5|211|289; (*GB) gi|225425110|ref|XP_002272919.1| (e_value=5e-82) PREDICTED: TIMELESS-interacting protein [Vitis vinifera];; (*SWP) sp|Q5F416|TIPIN_CHICK (e_value=1e-14) TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1;; (*TAIR) AT3G02820.1 (e_value=3e-68) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:611573-613294 FORWARD LENGTH=282;; (*ITAG) Solyc04g008600.2.1 (e_value=1e-134) genomic_reference:SL2.40ch04 gene_region:2202430-2209479 transcript_region:SL2.40ch04:2202430..2209479+ go_terms:GO:0005634,GO:0008270 functional_description:"Chromosome segregation in meiosis protein 3 (AHRD V1 *--- C0NYU8_AJECG); contains Interpro domain(s) IPR012923 Replication fork protection component Swi3 "; GO:0005634,GO:0008270 NbS00036926g0012.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.92|1|0.58|0.92|13|1262|503; (*GB) gi|225457614|ref|XP_002273026.1| (e_value=0.0) PREDICTED: MLO-like protein 5-like [Vitis vinifera];; (*SWP) sp|O22815|MLO5_ARATH (e_value=6e-179) MLO-like protein 5 OS=Arabidopsis thaliana GN=MLO5 PE=2 SV=1;; (*TAIR) AT2G33670.1 (e_value=5e-180) | Symbols: MLO5, ATMLO5 | Seven transmembrane MLO family protein | chr2:14245138-14247879 FORWARD LENGTH=501;; (*ITAG) Solyc08g067760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53957062-53962884 transcript_region:SL2.40ch08:53957062..53962884- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00036926g0004.1 protein AED:0.48 eAED:0.53 QI:0|0.6|0.66|1|1|1|6|0|278; (*GB) gi|224086843|ref|XP_002307982.1| (e_value=6e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|O35130|NEP1_MOUSE (e_value=8e-40) Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1;; (*TAIR) AT3G57000.1 (e_value=6e-74) | Symbols: | nucleolar essential protein-related | chr3:21092610-21094109 FORWARD LENGTH=298;; (*ITAG) Solyc12g017630.1.1 (e_value=1e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7087202-7090616 transcript_region:SL2.40ch12:7087202..7090616+ functional_description:"Nucleolar essential protein 1 (AHRD V1 **-- B0WB67_CULQU); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 "; NbS00060212g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|0|329; (*GB) gi|356558221|ref|XP_003547406.1| (e_value=6e-145) PREDICTED: peroxidase 7-like [Glycine max];; (*SWP) sp|Q9SY33|PER7_ARATH (e_value=3e-118) Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1;; (*TAIR) AT1G30870.1 (e_value=3e-119) | Symbols: | Peroxidase superfamily protein | chr1:10991535-10992885 FORWARD LENGTH=349;; (*ITAG) Solyc02g082090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40391015-40393235 transcript_region:SL2.40ch02:40391015..40393235- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q5W5I3_PICAB); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00033611g0007.1 protein AED:0.17 eAED:0.17 QI:346|1|1|1|1|1|3|356|154; (*GB) gi|225440474|ref|XP_002272505.1| (e_value=1e-73) PREDICTED: CASP-like protein At3g53850 [Vitis vinifera];; (*SWP) sp|Q945M8|CSPLI_ARATH (e_value=4e-63) CASP-like protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1;; (*TAIR) AT3G53850.1 (e_value=3e-64) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:19948262-19948994 REVERSE LENGTH=154;; (*ITAG) Solyc09g011230.2.1 (e_value=1e-89) genomic_reference:SL2.40ch09 gene_region:4562138-4566157 transcript_region:SL2.40ch09:4562138..4566157- functional_description:"UPF0497 membrane protein At3g53850 (AHRD V1 ***- U497L_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00033611g0010.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|1|2|0|617; (*GB) gi|255578007|ref|XP_002529875.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q9LZM4|WAKLQ_ARATH (e_value=0.0) Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1;; (*TAIR) AT5G02070.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:405895-408220 REVERSE LENGTH=657;; (*ITAG) Solyc09g011200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4547783-4552076 transcript_region:SL2.40ch09:4547783..4552076+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00033611g0004.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|224087478|ref|XP_002308177.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g011190.1.1 (e_value=8e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4543217-4543528 transcript_region:SL2.40ch09:4543217..4543528+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032671g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|629; (*GB) gi|225449284|ref|XP_002276823.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 85A1-like [Vitis vinifera];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=1e-93) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=1e-94) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc03g078770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44997523-44999211 transcript_region:SL2.40ch03:44997523..44999211+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **** Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00034721g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.25|1|0.33|0.5|4|0|645; (*GB) gi|255545116|ref|XP_002513619.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FLV4|Y5248_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1;; (*TAIR) AT5G24080.1 (e_value=1e-153) | Symbols: | Protein kinase superfamily protein | chr5:8139334-8141014 REVERSE LENGTH=470;; (*ITAG) Solyc03g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2343464-2347272 transcript_region:SL2.40ch03:2343464..2347272+ go_terms:GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00034721g0013.1 protein AED:0.10 eAED:0.10 QI:111|0.78|0.75|1|1|1|20|147|1326; (*GB) gi|356574532|ref|XP_003555400.1| (e_value=0.0) PREDICTED: protein timeless homolog [Glycine max];; (*TAIR) AT5G52910.1 (e_value=4e-140) | Symbols: ATIM | timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141;; (*ITAG) Solyc03g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2347943-2362320 transcript_region:SL2.40ch03:2347943..2362320- functional_description:"Topoisomerase 1-associated factor 1 (AHRD V1 *--- C9S978_VERA1); contains Interpro domain(s) IPR007725 Timeless C-terminal "; NbS00034721g0011.1 protein AED:0.15 eAED:0.15 QI:165|1|1|1|0.81|0.83|12|612|603; (*GB) gi|225462665|ref|XP_002264485.1| (e_value=0.0) PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FLW9|PKP2_ARATH (e_value=0.0) Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1;; (*TAIR) AT5G52920.1 (e_value=0.0) | Symbols: PKP1, PKP-BETA1, PKP2 | plastidic pyruvate kinase beta subunit 1 | chr5:21463680-21466612 FORWARD LENGTH=579;; (*ITAG) Solyc03g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2363561-2372504 transcript_region:SL2.40ch03:2363561..2372504- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A5BTB0_VITVI); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00041448g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.77|1|0.87|0.88|9|459|481; (*GB) gi|255572963|ref|XP_002527412.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9C718|RH20_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1;; (*TAIR) AT1G55150.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501;; (*ITAG) Solyc12g044860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45650517-45657385 transcript_region:SL2.40ch12:45650517..45657385- go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00047957g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|224103797|ref|XP_002313197.1| (e_value=9e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=7e-56) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=5e-57) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00047957g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|147820114|emb|CAN62804.1| (e_value=4e-20) hypothetical protein VITISV_011795 [Vitis vinifera];; (*SWP) sp|O22126|FLA8_ARATH (e_value=4e-12) Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1;; (*TAIR) AT2G45470.1 (e_value=3e-13) | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalactan protein 8 | chr2:18742797-18744059 REVERSE LENGTH=420;; (*ITAG) Solyc08g006810.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1354190-1355278 transcript_region:SL2.40ch08:1354190..1355278- functional_description:"Fasciclin-like arabinogalactan protein 17 (AHRD V1 *-*- A9XTM2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00047957g0008.1 protein AED:0.21 eAED:0.21 QI:225|0.85|0.75|1|0.71|0.75|8|0|651; (*GB) gi|225430488|ref|XP_002285526.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera];; (*SWP) sp|A5D7E2|TM9S4_BOVIN (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2;; (*TAIR) AT5G25100.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:8648374-8651015 REVERSE LENGTH=644;; (*ITAG) Solyc08g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1356285-1362353 transcript_region:SL2.40ch08:1356285..1362353- go_terms:GO:0005515 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 ***- B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515 NbS00001094g0101.1 protein AED:0.73 eAED:0.90 QI:0|0|0|0.66|1|1|3|0|97 NbS00001094g0102.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|85 NbS00053440g0001.1 protein AED:0.13 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|94 NbS00000895g0001.1 protein AED:0.05 eAED:0.05 QI:88|0|0.5|1|0|0.5|2|0|118; (*GB) gi|255578609|ref|XP_002530166.1| (e_value=6e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G06270.1 (e_value=7e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1912895-1913263 FORWARD LENGTH=122;; (*ITAG) Solyc06g073990.1.1 (e_value=5e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:42126421-42126780 transcript_region:SL2.40ch06:42126421..42126780+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015429g0006.1 protein AED:0.02 eAED:0.02 QI:329|1|1|1|1|1|2|251|505; (*GB) gi|225424954|ref|XP_002263686.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251363 [Vitis vinifera];; (*TAIR) AT4G20170.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF23) | chr4:10896810-10898794 FORWARD LENGTH=504;; (*ITAG) Solyc02g082140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40437401-40440396 transcript_region:SL2.40ch02:40437401..40440396+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00015429g0002.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|255586746|ref|XP_002533993.1| (e_value=1e-56) hypothetical protein RCOM_0274290 [Ricinus communis];; (*TAIR) AT4G20190.1 (e_value=6e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink). | chr4:10906508-10907677 REVERSE LENGTH=389;; (*ITAG) Solyc02g082150.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40443813-40444862 transcript_region:SL2.40ch02:40443813..40444862- functional_description:"Unknown Protein (AHRD V1)"; NbS00001935g0006.1 protein AED:0.09 eAED:0.09 QI:211|0.8|0.83|1|0.2|0.33|6|601|132; (*GB) gi|82470793|gb|ABB77433.1| (e_value=4e-23) RBX1-like protein [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=2e-11) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.2 (e_value=1e-12) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=142;; (*ITAG) Solyc12g009120.1.1 (e_value=7e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00001935g0007.1 protein AED:0.04 eAED:0.04 QI:153|0.92|0.93|1|0.57|0.53|15|390|339; (*GB) gi|297738563|emb|CBI27808.3| (e_value=5e-175) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G06005.1 (e_value=2e-153) | Symbols: FIP1 | FRIGIDA interacting protein 1 | chr2:2332583-2336022 FORWARD LENGTH=355;; (*ITAG) Solyc12g009100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2419442-2430753 transcript_region:SL2.40ch12:2419442..2430753- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00050600g0005.1 protein AED:0.31 eAED:0.40 QI:0|1|0|1|1|1|2|0|145; (*GB) gi|356569375|ref|XP_003552877.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100810542 [Glycine max];; (*TAIR) AT1G70780.1 (e_value=4e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc02g091540.2.1 (e_value=1e-58) genomic_reference:SL2.40ch02 gene_region:47381016-47381951 transcript_region:SL2.40ch02:47381016..47381951+ functional_description:"Senescence-associated protein (AHRD V1 **-- B6UEV1_MAIZE)"; NbS00031606g0005.1 protein AED:0.27 eAED:0.27 QI:82|1|1|1|0.6|0.66|6|353|350; (*GB) gi|38503237|sp|Q9SC80.1|DHYS_TOBAC (e_value=0.0) RecName: Full=Deoxyhypusine synthase;; (*SWP) sp|Q9SC80|DHYS_TOBAC (e_value=0.0) Deoxyhypusine synthase OS=Nicotiana tabacum GN=DHS1 PE=2 SV=1;; (*TAIR) AT5G05920.1 (e_value=0.0) | Symbols: DHS, EDA22 | deoxyhypusine synthase | chr5:1777781-1779699 REVERSE LENGTH=368;; (*ITAG) Solyc02g080800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39508646-39513817 transcript_region:SL2.40ch02:39508646..39513817- go_terms:GO:0005515 functional_description:"Deoxyhypusine synthase (AHRD V1 ***- Q5ZN61_9ASTE); contains Interpro domain(s) IPR002773 Deoxyhypusine synthase "; GO:0005515 NbS00004422g0017.1 protein AED:0.21 eAED:0.21 QI:111|0.83|1|1|0.83|0.71|7|493|261; (*GB) gi|255581732|ref|XP_002531668.1| (e_value=6e-115) Serine/threonine-protein kinase SAPK1, putative [Ricinus communis];; (*SWP) sp|Q75LR7|SAPK1_ORYSJ (e_value=9e-103) Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1;; (*TAIR) AT1G78290.3 (e_value=7e-96) | Symbols: | Protein kinase superfamily protein | chr1:29457457-29458909 REVERSE LENGTH=343;; (*ITAG) Solyc04g074500.2.1 (e_value=5e-134) genomic_reference:SL2.40ch04 gene_region:58086749-58090596 transcript_region:SL2.40ch04:58086749..58090596- go_terms:GO:0004679 functional_description:"Serine-threonine protein kinase (AHRD V1 **** Q09VQ1_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00004422g0018.1 protein AED:0.20 eAED:0.20 QI:121|0.87|0.76|1|0.93|1|17|0|1030; (*GB) gi|302141987|emb|CBI19190.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M9E8|FB92_ARATH (e_value=0.0) F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3;; (*TAIR) AT1G78280.1 (e_value=0.0) | Symbols: | transferases, transferring glycosyl groups | chr1:29452823-29457118 FORWARD LENGTH=943;; (*ITAG) Solyc04g074490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58075543-58086499 transcript_region:SL2.40ch04:58075543..58086499+ go_terms:GO:0016757 functional_description:"Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (AHRD V1 *--- JMJD6_DANRE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0016757 NbS00004422g0022.1 protein AED:0.27 eAED:0.29 QI:0|0.8|0.66|1|1|1|6|0|573; (*GB) gi|114193|sp|P27608.1|AROF_TOBAC (e_value=0.0) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor;; (*SWP) sp|P27608|AROF_TOBAC (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1;; (*TAIR) AT1G22410.1 (e_value=0.0) | Symbols: | Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527;; (*ITAG) Solyc04g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58061772-58065403 transcript_region:SL2.40ch04:58061772..58065403+ go_terms:GO:0005515,GO:0003849 functional_description:"3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase) (DAHP synthetase class II) (AHRD V1 **** A4YX08_BRASO); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0005515,GO:0003849 NbS00011358g0001.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|1|1|3|0|136; (*GB) gi|359497315|ref|XP_002266324.2| (e_value=5e-61) PREDICTED: uncharacterized protein LOC100262782 [Vitis vinifera];; (*TAIR) AT5G67620.1 (e_value=5e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26964891-26965720 REVERSE LENGTH=182;; (*ITAG) Solyc02g092240.2.1 (e_value=2e-85) genomic_reference:SL2.40ch02 gene_region:47966724-47969871 transcript_region:SL2.40ch02:47966724..47969871+ functional_description:"Os10g0352000 protein (Fragment) (AHRD V1 *-*- Q0IY85_ORYSJ)"; NbS00011358g0006.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|224114489|ref|XP_002316776.1| (e_value=4e-87) fasciclin-like arabinogalactan protein [Populus trichocarpa];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=2e-76) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=2e-77) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc10g005960.1.1 (e_value=6e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00011358g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|89 NbS00040545g0005.1 protein AED:0.12 eAED:0.12 QI:354|1|1|1|0|0.2|5|331|249; (*GB) gi|297734031|emb|CBI15278.3| (e_value=1e-102) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G62720.1 (e_value=2e-82) | Symbols: | Integral membrane HPP family protein | chr5:25191969-25194845 FORWARD LENGTH=243;; (*ITAG) Solyc03g113280.2.1 (e_value=7e-122) genomic_reference:SL2.40ch03 gene_region:57517093-57522208 transcript_region:SL2.40ch03:57517093..57522208- functional_description:"Membrane protein HPP family (AHRD V1 *-*- D9Y9E6_9DELT); contains Interpro domain(s) IPR007065 HPP "; NbS00040545g0007.1 protein AED:0.57 eAED:0.87 QI:0|0|0|0.75|1|1|4|0|73 NbS00056130g0003.1 protein AED:0.07 eAED:0.25 QI:193|0|0.5|1|0|0|2|274|49 NbS00002596g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|1|1|4|0|282; (*GB) gi|29427816|sp|Q8HSW1.1|KADC_SOLTU (e_value=6e-174) RecName: Full=Adenylate kinase, chloroplastic; Short=AK; AltName: Full=ATP-AMP transphosphorylase; Flags: Precursor;; (*SWP) sp|Q8HSW1|KADC_SOLTU (e_value=2e-175) Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1;; (*TAIR) AT2G37250.1 (e_value=2e-140) | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:15641991-15643318 FORWARD LENGTH=284;; (*ITAG) Solyc09g007180.2.1 (e_value=1e-179) genomic_reference:SL2.40ch09 gene_region:801969-804985 transcript_region:SL2.40ch09:801969..804985- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00002596g0006.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|292; (*GB) gi|190607699|gb|ACE79508.1| (e_value=2e-115) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-68) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-48) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=1e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00002596g0009.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0|2|0|410; (*GB) gi|15418709|gb|AAG31013.1| (e_value=3e-21) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=5e-13) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*ITAG) Solyc06g064680.1.1 (e_value=2e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36704723-36707008 transcript_region:SL2.40ch06:36704723..36707008+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00028842g0005.1 protein AED:0.03 eAED:0.09 QI:0|0|0|1|0|0|2|0|444; (*GB) gi|296086649|emb|CBI32284.3| (e_value=6e-162) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5F3D7|UTP15_CHICK (e_value=6e-46) U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1;; (*TAIR) AT2G47990.1 (e_value=1e-135) | Symbols: SWA1, EDA13, EDA19 | transducin family protein / WD-40 repeat family protein | chr2:19637010-19638602 REVERSE LENGTH=530;; (*ITAG) Solyc05g010480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4709782-4711597 transcript_region:SL2.40ch05:4709782..4711597- go_terms:GO:0030515 functional_description:"U3 small nucleolar RNA-associated protein 15 homolog (AHRD V1 **-- B5X2W0_SALSA); contains Interpro domain(s) IPR018983 U3 small nucleolar RNA-associated protein 15, C-terminal "; GO:0030515 NbS00033233g0003.1 protein AED:0.12 eAED:0.12 QI:64|0.75|0.6|1|0.75|0.6|5|0|589; (*GB) gi|68300884|gb|AAY89374.1| (e_value=0.0) beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=0.0) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=0.0) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc09g091030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65730190-65735790 transcript_region:SL2.40ch09:65730190..65735790+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** E0AE02_SOLLC); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00033316g0011.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|287; (*GB) gi|356577193|ref|XP_003556712.1| (e_value=6e-98) PREDICTED: LOW QUALITY PROTEIN: beta-fructofuranosidase, insoluble isoenzyme 3-like [Glycine max];; (*SWP) sp|P26792|INV1_DAUCA (e_value=5e-58) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT2G36190.1 (e_value=6e-45) | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 | chr2:15174951-15177785 REVERSE LENGTH=591;; (*ITAG) Solyc10g085360.1.1 (e_value=3e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63890782-63895052 transcript_region:SL2.40ch10:63890782..63895052+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00033316g0013.1 protein AED:0.29 eAED:0.29 QI:106|0.85|0.86|1|0.78|0.73|15|600|418; (*GB) gi|225430480|ref|XP_002283319.1| (e_value=0.0) PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8RXN4|HIBC5_ARATH (e_value=0.0) 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1;; (*TAIR) AT4G31810.1 (e_value=0.0) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387365-15390290 REVERSE LENGTH=409;; (*ITAG) Solyc10g085630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64072673-64081808 transcript_region:SL2.40ch10:64072673..64081808+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 *-*- FADB_PHOLL); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00033316g0005.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|370; (*GB) gi|224118914|ref|XP_002331379.1| (e_value=2e-64) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=7e-53) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=2e-43) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc10g085460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00033316g0012.1 protein AED:0.35 eAED:0.37 QI:9|0.6|0.66|1|0.8|0.83|6|381|422; (*GB) gi|225441648|ref|XP_002282336.1| (e_value=5e-133) PREDICTED: uncharacterized protein LOC100248614 isoform 2 [Vitis vinifera];; (*TAIR) AT3G04030.1 (e_value=1e-90) | Symbols: | Homeodomain-like superfamily protein | chr3:1042920-1044574 REVERSE LENGTH=388;; (*ITAG) Solyc10g085620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64062950-64065054 transcript_region:SL2.40ch10:64062950..64065054- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00033316g0004.1 protein AED:0.45 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|115; (*ITAG) Solyc10g085460.1.1 (e_value=9e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00020744g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|95 NbS00020744g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0|2|0|78 NbS00020744g0004.1 protein AED:0.24 eAED:0.57 QI:0|0|0|1|0|0|2|0|67 NbS00044267g0004.1 protein AED:0.30 eAED:0.30 QI:12|1|1|1|1|1|4|169|266; (*GB) gi|321149987|gb|ADW66141.1| (e_value=2e-146) auxin-induced protein PCNT115 [Solanum nigrum];; (*SWP) sp|Q7XT99|AKR2_ORYSJ (e_value=4e-140) Probable aldo-keto reductase 2 OS=Oryza sativa subsp. japonica GN=Os04g0338000 PE=2 SV=2;; (*TAIR) AT1G60690.1 (e_value=1e-140) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22349892-22351668 REVERSE LENGTH=345;; (*ITAG) Solyc09g098090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67260446-67263935 transcript_region:SL2.40ch09:67260446..67263935+ go_terms:GO:0004033 functional_description:"Aldo/keto reductase (AHRD V1 **** A2Q5A8_MEDTR); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbC25824803g0003.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|176; (*GB) gi|224078996|ref|XP_002305711.1| (e_value=2e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=4e-55) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29750.1 (e_value=2e-56) | Symbols: RKF1 | receptor-like kinase in flowers 1 | chr1:10414071-10419813 REVERSE LENGTH=1006;; (*ITAG) Solyc02g071880.2.1 (e_value=9e-63) genomic_reference:SL2.40ch02 gene_region:35821174-35834341 transcript_region:SL2.40ch02:35821174..35834341- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00002119g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|6|393|327; (*GB) gi|255571843|ref|XP_002526864.1| (e_value=3e-141) eukaryotic translation initiation factor 3f, eif3f, putative [Ricinus communis];; (*SWP) sp|O04202|EIF3F_ARATH (e_value=4e-128) Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1;; (*TAIR) AT2G39990.1 (e_value=3e-129) | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293;; (*ITAG) Solyc05g052690.2.1 (e_value=1e-165) genomic_reference:SL2.40ch05 gene_region:62044294-62048361 transcript_region:SL2.40ch05:62044294..62048361- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 5 (AHRD V1 ***- B4FRD9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00002119g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|91; (*GB) gi|334902911|gb|AEH25587.1| (e_value=2e-16) transposase [Solanum demissum];; (*ITAG) Solyc08g044300.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31358806-31359905 transcript_region:SL2.40ch08:31358806..31359905- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00002119g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|0|1|0|60 NbS00022562g0007.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.46|0.66|0.78|0.73|15|0|1474; (*GB) gi|225436958|ref|XP_002271866.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261323 [Vitis vinifera];; (*TAIR) AT3G63070.1 (e_value=2e-78) | Symbols: | Tudor/PWWP/MBT domain-containing protein | chr3:23302667-23309575 FORWARD LENGTH=1347;; (*ITAG) Solyc09g064840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57898206-57912501 transcript_region:SL2.40ch09:57898206..57912501+ functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--- C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; NbS00020769g0006.1 protein AED:0.25 eAED:0.25 QI:307|0.66|1|1|0.66|0.75|4|448|250; (*GB) gi|84620804|gb|ABC59516.1| (e_value=5e-102) chloroplast photosystem II 22 kDa component [Nicotiana benthamiana];; (*SWP) sp|Q9SMB4|PSBS_TOBAC (e_value=7e-100) Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1;; (*TAIR) AT1G44575.1 (e_value=4e-69) | Symbols: NPQ4, PSBS | Chlorophyll A-B binding family protein | chr1:16871768-16873194 FORWARD LENGTH=265;; (*ITAG) Solyc06g060340.2.1 (e_value=6e-82) genomic_reference:SL2.40ch06 gene_region:34712220-34715366 transcript_region:SL2.40ch06:34712220..34715366+ go_terms:GO:0016168,GO:0051738 functional_description:"Chloroplast photosystem II-associated protein (AHRD V1 ***- A8HPM2_CHLRE); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168,GO:0051738 NbS00020769g0110.1 protein AED:0.25 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|389 NbS00020769g0101.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|373 NbS00044231g0005.1 protein AED:0.26 eAED:0.28 QI:196|0.81|0.75|1|0.72|0.83|12|413|528; (*GB) gi|225470348|ref|XP_002269604.1| (e_value=3e-164) PREDICTED: UPF0533 protein C5orf44 [Vitis vinifera];; (*SWP) sp|Q5RCG0|CE044_PONAB (e_value=8e-43) UPF0533 protein C5orf44 homolog OS=Pongo abelii PE=2 SV=1;; (*TAIR) AT2G47960.1 (e_value=4e-149) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr2:19625631-19628869 FORWARD LENGTH=442;; (*ITAG) Solyc10g008990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3017001-3024548 transcript_region:SL2.40ch10:3017001..3024548+ go_terms:GO:0005515 functional_description:"UPF0533 protein C5orf44 homolog (AHRD V1 ***- CE044_PONAB); contains Interpro domain(s) IPR010378 Protein of unknown function DUF974 "; GO:0005515 NbS00007437g0017.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|155; (*GB) gi|224098730|ref|XP_002311246.1| (e_value=3e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=2e-73) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=1e-74) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc06g082310.2.1 (e_value=4e-80) genomic_reference:SL2.40ch06 gene_region:44463336-44464540 transcript_region:SL2.40ch06:44463336..44464540- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00007437g0016.1 protein AED:0.38 eAED:0.41 QI:252|0.85|0.87|1|1|1|8|0|263; (*GB) gi|225434453|ref|XP_002273518.1| (e_value=9e-85) PREDICTED: probable protein phosphatase 2C 26 [Vitis vinifera];; (*SWP) sp|O64730|P2C26_ARATH (e_value=6e-78) Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170 PE=2 SV=2;; (*TAIR) AT2G30170.2 (e_value=2e-80) | Symbols: | Protein phosphatase 2C family protein | chr2:12879802-12881046 REVERSE LENGTH=221;; (*ITAG) Solyc06g007350.2.1 (e_value=3e-117) genomic_reference:SL2.40ch06 gene_region:1383164-1387979 transcript_region:SL2.40ch06:1383164..1387979+ go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00007437g0018.1 protein AED:0.49 eAED:0.64 QI:0|0.28|0.12|0.87|0.71|0.62|8|220|383 NbS00024648g0004.1 protein AED:0.35 eAED:0.56 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-21) hypothetical protein [Nicotiana tabacum]; NbS00024648g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|4|0|151; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-41) hypothetical protein [Nicotiana tabacum]; NbS00009088g0005.1 protein AED:0.26 eAED:0.26 QI:324|1|1|1|0|1|2|577|52 NbS00021676g0002.1 protein AED:0.00 eAED:0.00 QI:93|1|1|1|1|1|2|97|146; (*GB) gi|296088269|emb|CBI35777.3| (e_value=7e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G13540.1 (e_value=1e-14) | Symbols: | unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:7869896-7870604 FORWARD LENGTH=210;; (*ITAG) Solyc12g097060.1.1 (e_value=7e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64046034-64047345 transcript_region:SL2.40ch12:64046034..64047345- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIR5_ARATH)"; NbS00024560g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|591; (*GB) gi|225444009|ref|XP_002281463.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00024560g0030.1 protein AED:0.10 eAED:0.10 QI:0|0.4|0.5|0.83|0.4|0.66|6|0|463; (*GB) gi|224116602|ref|XP_002317344.1| (e_value=8e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|A9LNK9|CPSF_ARATH (e_value=3e-73) Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1;; (*TAIR) AT1G30460.1 (e_value=3e-74) | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631;; (*ITAG) Solyc02g021760.2.1 (e_value=9e-125) genomic_reference:SL2.40ch02 gene_region:14319129-14335346 transcript_region:SL2.40ch02:14319129..14335346- go_terms:GO:0005516,GO:0003723 functional_description:"mRNA 3&apos-end-processing protein yth1 (AHRD V1 *--- B2WC08_PYRTR); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005516,GO:0003723 NbS00024560g0027.1 protein AED:0.20 eAED:0.25 QI:0|0.5|0|1|0.5|1|3|0|365; (*GB) gi|225432238|ref|XP_002275635.1| (e_value=2e-70) PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Vitis vinifera];; (*SWP) sp|Q0DVX2|RH50_ORYSJ (e_value=1e-49) DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2;; (*TAIR) AT3G06980.1 (e_value=7e-40) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr3:2201531-2204662 FORWARD LENGTH=781;; (*ITAG) Solyc11g045190.1.1 (e_value=2e-140) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36914018-36920923 transcript_region:SL2.40ch11:36914018..36920923- go_terms:GO:0008026 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- C2LJD4_PROMI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00024560g0005.1 protein AED:0.48 eAED:0.52 QI:0|0.42|0.25|0.62|1|1|8|851|439; (*GB) gi|356507351|ref|XP_003522431.1| (e_value=9e-156) PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like [Glycine max];; (*SWP) sp|Q8GUG7|RH50_ARATH (e_value=7e-147) DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2;; (*TAIR) AT3G06980.1 (e_value=5e-148) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr3:2201531-2204662 FORWARD LENGTH=781;; (*ITAG) Solyc11g045180.1.1 (e_value=6e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36898345-36899171 transcript_region:SL2.40ch11:36898345..36899171- go_terms:GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- D3BPQ9_POLPA); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00024560g0007.1 protein AED:0.52 eAED:0.57 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|224088334|ref|XP_002308414.1| (e_value=4e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|P69242|RPOT3_NICSY (e_value=2e-25) DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1;; (*TAIR) AT2G24120.1 (e_value=1e-21) | Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10249358-10254530 REVERSE LENGTH=993;; (*ITAG) Solyc07g005930.2.1 (e_value=2e-26) genomic_reference:SL2.40ch07 gene_region:764089-775345 transcript_region:SL2.40ch07:764089..775345+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9IMA6_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00024560g0013.1 protein AED:0.47 eAED:0.66 QI:0|0|0|1|1|1|3|0|127 NbS00024560g0003.1 protein AED:0.28 eAED:0.77 QI:0|0|0|1|1|1|2|0|378; (*GB) gi|15238636|ref|NP_200827.1| (e_value=3e-69) NEDD8-specific protease 1 [Arabidopsis thaliana];; (*SWP) sp|Q9LSS7|RUBP1_ARATH (e_value=7e-71) NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2 SV=1;; (*TAIR) AT5G60190.1 (e_value=6e-72) | Symbols: | Cysteine proteinases superfamily protein | chr5:24235319-24235999 FORWARD LENGTH=226;; (*ITAG) Solyc05g005310.1.1 (e_value=7e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:245719-246174 transcript_region:SL2.40ch05:245719..246174- go_terms:GO:0019784 functional_description:"NEDD8-specific protease 2 (AHRD V1 *-** B2VZK5_PYRTR); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0019784 NbS00024560g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|244; (*GB) gi|225423527|ref|XP_002271192.1| (e_value=2e-117) PREDICTED: protein KTI12 homolog [Vitis vinifera];; (*SWP) sp|Q4KLF3|KTI12_XENLA (e_value=4e-31) Protein KTI12 homolog OS=Xenopus laevis GN=kti12 PE=2 SV=1;; (*TAIR) AT1G13870.1 (e_value=3e-101) | Symbols: DRL1, AtKTI12 | calmodulin binding;purine nucleotide binding | chr1:4747437-4748345 REVERSE LENGTH=302;; (*ITAG) Solyc08g008250.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2689085-2689837 transcript_region:SL2.40ch08:2689085..2689837+ go_terms:GO:0003682 functional_description:"KTI12 homolog (AHRD V1 ***- B5X8A8_SALSA); contains Interpro domain(s) IPR013641 Chromatin associated protein KTI12 "; GO:0003682 NbS00024560g0032.1 protein AED:0.30 eAED:1.00 QI:0|0|0|1|0|0|3|0|124 NbS00024560g0031.1 protein AED:0.36 eAED:0.49 QI:0|0|0|1|0|0|3|0|95; (*GB) gi|255540893|ref|XP_002511511.1| (e_value=4e-16) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*TAIR) AT5G62710.1 (e_value=2e-17) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25187438-25190325 FORWARD LENGTH=604;; (*ITAG) Solyc03g113450.2.1 (e_value=4e-18) genomic_reference:SL2.40ch03 gene_region:57645268-57650030 transcript_region:SL2.40ch03:57645268..57650030+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023920g0006.1 protein AED:0.42 eAED:0.38 QI:0|0.66|0.14|0.85|1|0.85|7|0|280; (*GB) gi|297734057|emb|CBI15304.3| (e_value=1e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LV17|BH079_ARATH (e_value=2e-79) Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1;; (*TAIR) AT5G62610.1 (e_value=1e-80) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:25133117-25134600 REVERSE LENGTH=281;; (*ITAG) Solyc05g006650.2.1 (e_value=3e-78) genomic_reference:SL2.40ch05 gene_region:1311134-1316254 transcript_region:SL2.40ch05:1311134..1316254- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00023920g0003.1 protein AED:0.20 eAED:0.20 QI:16|-1|0|1|-1|0|1|0|226; (*GB) gi|255540843|ref|XP_002511486.1| (e_value=1e-102) Rhicadhesin receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q9LMC9|GLT2_ARATH (e_value=4e-85) Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1;; (*TAIR) AT1G18980.1 (e_value=3e-86) | Symbols: | RmlC-like cupins superfamily protein | chr1:6557364-6558026 REVERSE LENGTH=220;; (*ITAG) Solyc03g113580.1.1 (e_value=9e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:57719517-57720170 transcript_region:SL2.40ch03:57719517..57720170- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- Q8H2A6_ANACO); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00042641g0002.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.66|1|1|1|6|0|301; (*GB) gi|77999263|gb|ABB16978.1| (e_value=5e-150) salt tolerance protein 5-like protein [Solanum tuberosum];; (*SWP) sp|Q5ZIN1|NUDC_CHICK (e_value=3e-67) Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1;; (*TAIR) AT5G53400.1 (e_value=2e-102) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc03g083390.2.1 (e_value=3e-146) genomic_reference:SL2.40ch03 gene_region:46783589-46788273 transcript_region:SL2.40ch03:46783589..46788273+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00007932g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|342; (*GB) gi|19743740|gb|AAL92461.1| (e_value=1e-150) putative glucosyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=2e-101) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34131.1 (e_value=7e-24) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc10g079350.1.1 (e_value=9e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60225048-60226499 transcript_region:SL2.40ch10:60225048..60226499- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00007932g0006.1 protein AED:0.53 eAED:0.78 QI:0|0|0|0.5|1|1|2|0|76 NbS00014515g0001.1 protein AED:0.03 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|225; (*GB) gi|350539962|ref|NP_001234848.1| (e_value=3e-64) ethylene response factor 1 [Solanum lycopersicum];; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=1e-38) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1;; (*TAIR) AT5G25190.1 (e_value=9e-40) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:8707007-8707655 REVERSE LENGTH=181;; (*ITAG) Solyc06g065820.2.1 (e_value=5e-67) genomic_reference:SL2.40ch06 gene_region:37639581-37641049 transcript_region:SL2.40ch06:37639581..37641049- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00000028g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|359497000|ref|XP_002280261.2| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100262292 [Vitis vinifera];; (*TAIR) AT1G28280.2 (e_value=7e-59) | Symbols: | VQ motif-containing protein | chr1:9886297-9887395 REVERSE LENGTH=243;; (*ITAG) Solyc02g078030.1.1 (e_value=3e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37420947-37421738 transcript_region:SL2.40ch02:37420947..37421738- functional_description:"DNA-binding WRKY VQ (AHRD V1 ***- Q2HTS9_MEDTR); contains Interpro domain(s) IPR008889 VQ "; NbS00017609g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|300; (*GB) gi|225456303|ref|XP_002279981.1| (e_value=9e-78) PREDICTED: cytochrome P450 94A1-like [Vitis vinifera];; (*SWP) sp|P98188|C94A2_VICSA (e_value=5e-48) Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1;; (*TAIR) AT5G63450.1 (e_value=5e-73) | Symbols: CYP94B1 | cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510;; (*ITAG) Solyc02g094110.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49324283-49325824 transcript_region:SL2.40ch02:49324283..49325824- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017609g0009.1 protein AED:0.05 eAED:0.05 QI:0|0.90|0.91|1|0.90|0.91|12|222|619; (*GB) gi|359488497|ref|XP_003633767.1| (e_value=0.0) PREDICTED: fidgetin-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q6PIW4|FIGL1_HUMAN (e_value=1e-105) Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2;; (*TAIR) AT3G27120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10000248-10003265 REVERSE LENGTH=476;; (*ITAG) Solyc02g094100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49313344-49320142 transcript_region:SL2.40ch02:49313344..49320142+ go_terms:GO:0000287 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- C0S965_PARBP); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0000287 NbS00056818g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|361; (*GB) gi|255565747|ref|XP_002523863.1| (e_value=2e-23) hypothetical protein RCOM_1282480 [Ricinus communis];; (*TAIR) AT5G19650.1 (e_value=2e-18) | Symbols: ATOFP8, OFP8 | ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221;; (*ITAG) Solyc11g068780.1.1 (e_value=2e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:50496070-50496483 transcript_region:SL2.40ch11:50496070..50496483- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SZV1_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00012764g0001.1 protein AED:0.25 eAED:0.26 QI:361|0.66|0.71|1|0.5|0.28|7|505|449; (*GB) gi|42408147|dbj|BAD09285.1| (e_value=2e-144) putative glutamate/malate translocator [Oryza sativa Japonica Group];; (*SWP) sp|Q41364|SOT1_SPIOL (e_value=9e-81) 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1;; (*TAIR) AT5G64290.1 (e_value=7e-143) | Symbols: DCT, DIT2.1 | dicarboxylate transport 2.1 | chr5:25714495-25716642 REVERSE LENGTH=563;; (*ITAG) Solyc11g010290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3367406-3372067 transcript_region:SL2.40ch11:3367406..3372067- go_terms:GO:0015367 functional_description:"2-oxoglutarate/malate translocator (AHRD V1 **-* Q9FMF7_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0015367 NbS00012764g0008.1 protein AED:0.10 eAED:0.19 QI:0|0.66|0.25|1|1|0.75|4|0|352; (*GB) gi|359475821|ref|XP_002285150.2| (e_value=4e-83) PREDICTED: uncharacterized protein LOC100266444 [Vitis vinifera];; (*TAIR) AT4G32295.1 (e_value=4e-58) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15592960-15594080 FORWARD LENGTH=238;; (*ITAG) Solyc08g059700.1.1 (e_value=3e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:41957744-41959043 transcript_region:SL2.40ch08:41957744..41959043+ functional_description:"Genomic DNA chromosome 3 P1 clone MUJ8 (AHRD V1 ***- Q9LRN2_ARATH)"; NbS00028055g0004.1 protein AED:0.14 eAED:0.14 QI:72|0|0|0.66|0.5|0.66|3|0|123; (*GB) gi|297737946|emb|CBI27147.3| (e_value=3e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=3e-54) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=8e-53) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=2e-55) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00028055g0006.1 protein AED:0.18 eAED:0.27 QI:0|0|0|1|0|0|3|0|173; (*ITAG) Solyc12g039050.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00004915g0008.1 protein AED:0.12 eAED:0.11 QI:289|0.9|0.81|1|0.8|0.72|11|0|838; (*GB) gi|225470678|ref|XP_002269786.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-91) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G30020.1 (e_value=0.0) | Symbols: | PA-domain containing subtilase family protein | chr4:14678251-14681762 FORWARD LENGTH=816;; (*ITAG) Solyc07g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3887662-3898941 transcript_region:SL2.40ch07:3887662..3898941+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00004915g0007.1 protein AED:0.29 eAED:0.32 QI:728|0.6|0.83|1|0.6|0.66|6|297|67 NbS00008394g0006.1 protein AED:0.06 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|87 NbS00023647g0001.1 protein AED:0.14 eAED:0.14 QI:415|0|0.5|1|0|0.5|2|0|135; (*GB) gi|56694219|gb|AAW22881.1| (e_value=4e-37) putative EARLY flowering 4 protein [Solanum lycopersicum];; (*SWP) sp|O04211|ELF4_ARATH (e_value=2e-27) Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1;; (*TAIR) AT2G40080.1 (e_value=2e-28) | Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111;; (*ITAG) Solyc06g051680.1.1 (e_value=3e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:31701425-31701796 transcript_region:SL2.40ch06:31701425..31701796- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00023647g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|86 NbS00023647g0110.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|189 NbS00023647g0115.1 protein AED:0.57 eAED:0.57 QI:0|0|0|1|1|1|2|0|172 NbS00023647g0116.1 protein AED:0.05 eAED:0.05 QI:244|1|1|1|0.6|0.83|6|189|256 NbS00023647g0118.1 protein AED:0.12 eAED:0.12 QI:88|1|1|1|1|1|12|381|538 NbS00023647g0119.1 protein AED:0.61 eAED:0.69 QI:0|0|0|0.5|0|0|2|0|236 NbS00023647g0122.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|0|0|3|0|206 NbS00011313g0004.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|13|464|598; (*GB) gi|225443490|ref|XP_002274181.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256501 isoform 1 [Vitis vinifera];; (*TAIR) AT1G16720.1 (e_value=0.0) | Symbols: HCF173 | high chlorophyll fluorescence phenotype 173 | chr1:5723161-5726248 FORWARD LENGTH=598;; (*ITAG) Solyc08g016080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6589899-6596942 transcript_region:SL2.40ch08:6589899..6596942+ go_terms:GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *--- B3ECK3_CHLL2); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00011313g0107.1 protein AED:0.16 eAED:0.19 QI:0|0.66|0.5|0.75|0.73|0.81|16|0|741 NbS00024367g0001.1 protein AED:0.38 eAED:0.38 QI:63|0|0.5|1|0|0.5|2|0|471; (*GB) gi|297746144|emb|CBI16200.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LQQ1|PPR20_ARATH (e_value=9e-172) Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1;; (*TAIR) AT1G07740.1 (e_value=7e-173) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2399117-2400496 REVERSE LENGTH=459;; (*ITAG) Solyc11g073230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024367g0008.1 protein AED:0.03 eAED:0.03 QI:74|1|1|1|1|1|2|309|151; (*GB) gi|255584772|ref|XP_002533104.1| (e_value=5e-54) histone h2a, putative [Ricinus communis];; (*SWP) sp|Q2HU65|H2A2_MEDTR (e_value=4e-54) Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1;; (*TAIR) AT5G02560.1 (e_value=2e-51) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc11g073250.1.1 (e_value=9e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53355429-53355963 transcript_region:SL2.40ch11:53355429..53355963- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- C6TMV8_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00024367g0012.1 protein AED:0.44 eAED:0.45 QI:0|0|0|1|0|0|2|0|258; (*GB) gi|225463153|ref|XP_002267013.1| (e_value=3e-52) PREDICTED: uncharacterized protein LOC100244242 [Vitis vinifera];; (*SWP) sp|O64847|U136_ARATH (e_value=8e-37) UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1;; (*TAIR) AT3G43520.1 (e_value=1e-45) | Symbols: | Transmembrane proteins 14C | chr3:15406088-15407699 FORWARD LENGTH=240;; (*ITAG) Solyc11g073240.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53353841-53354590 transcript_region:SL2.40ch11:53353841..53354590+ go_terms:GO:0016020 functional_description:"Transmembrane protein 14C (AHRD V1 *-*- Q09JH3_ARGMO); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00004149g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.66|1|0.6|0.5|6|264|278; (*GB) gi|359477675|ref|XP_002285380.2| (e_value=2e-154) PREDICTED: HAUS augmin-like complex subunit 1-like [Vitis vinifera];; (*TAIR) AT2G41350.1 (e_value=7e-135) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr2:17231565-17233458 FORWARD LENGTH=298;; (*ITAG) Solyc10g079740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60563881-60566380 transcript_region:SL2.40ch10:60563881..60566380+ functional_description:"HAUS augmin-like complex subunit 1 (AHRD V1 ***- HAUS1_HUMAN)"; NbS00004149g0110.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0|1|0.33|0.75|4|0|493 NbS00032444g0002.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|0|0.5|2|0|228; (*GB) gi|255554288|ref|XP_002518184.1| (e_value=6e-80) glutathione s-transferase, putative [Ricinus communis];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=6e-60) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-52) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g091130.2.1 (e_value=2e-113) genomic_reference:SL2.40ch09 gene_region:65832583-65833588 transcript_region:SL2.40ch09:65832583..65833588- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00001368g0005.1 protein AED:0.32 eAED:0.36 QI:272|0.75|0.8|1|0.75|0.8|5|0|245; (*GB) gi|56606534|gb|AAW02789.1| (e_value=1e-148) aluminum-induced protein [Codonopsis lanceolata];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=3e-38) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT5G19140.1 (e_value=3e-136) | Symbols: ATAILP1, AILP1 | Aluminium induced protein with YGL and LRDR motifs | chr5:6423398-6425785 FORWARD LENGTH=234;; (*ITAG) Solyc01g079880.2.1 (e_value=9e-159) genomic_reference:SL2.40ch01 gene_region:71536915-71541059 transcript_region:SL2.40ch01:71536915..71541059- functional_description:"Asparagine synthetase (AHRD V1 *--- Q9ZST6_ARATH)"; NbS00001656g0001.1 protein AED:0.11 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|320; (*GB) gi|307159058|gb|ADN39415.1| (e_value=8e-112) NAC trascription factor 3 [Gossypium hirsutum];; (*SWP) sp|Q84WP6|NAC43_ARATH (e_value=8e-99) NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2;; (*TAIR) AT2G46770.1 (e_value=6e-100) | Symbols: NST1, ANAC043 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr2:19220917-19222822 REVERSE LENGTH=365;; (*ITAG) Solyc08g008660.2.1 (e_value=5e-108) genomic_reference:SL2.40ch08 gene_region:3025338-3026965 transcript_region:SL2.40ch08:3025338..3026965- go_terms:GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PDI0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563 NbS00001656g0006.1 protein AED:0.04 eAED:0.05 QI:0|0|0.5|1|0.33|0.25|4|188|351; (*GB) gi|365222868|gb|AEW69786.1| (e_value=1e-162) Hop-interacting protein THI143 [Solanum lycopersicum];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=6e-34) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT4G10630.1 (e_value=3e-83) | Symbols: | Glutaredoxin family protein | chr4:6566625-6567629 REVERSE LENGTH=334;; (*ITAG) Solyc08g083270.1.1 (e_value=3e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62941814-62942797 transcript_region:SL2.40ch08:62941814..62942797+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LYR1_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00020519g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|1|1|1|5|0|388; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=0.0) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT5G66460.1 (e_value=1e-139) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc00g231680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00020519g0015.1 protein AED:0.07 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.6|5|0|417; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=0.0) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=1e-133) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00020519g0004.1 protein AED:0.05 eAED:0.05 QI:157|0.8|0.83|1|0|0|6|454|769; (*GB) gi|28974687|gb|AAO61490.1| (e_value=0.0) arm repeat-containing protein [Nicotiana tabacum];; (*SWP) sp|O22193|PUB4_ARATH (e_value=2e-165) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G23140.2 (e_value=1e-166) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826;; (*ITAG) Solyc01g014230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:11880408-11883708 transcript_region:SL2.40ch01:11880408..11883708- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00018562g0009.1 protein AED:0.03 eAED:0.03 QI:69|1|1|1|1|1|2|123|88; (*SWP) sp|Q00747|LE25_SOLLC (e_value=2e-15) Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1;; (*ITAG) Solyc10g078770.1.1 (e_value=1e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59806503-59807276 transcript_region:SL2.40ch10:59806503..59807276- go_terms:GO:0009790 functional_description:"Seed maturation protein LEA 4 (AHRD V1 ***- Q9FE69_GLYTO); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00018562g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|315440443|gb|ADU20206.1| (e_value=3e-14) LEA 4 protein [Cicer arietinum];; (*SWP) sp|Q01417|PM1_SOYBN (e_value=1e-12) 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1;; (*TAIR) AT5G06760.1 (e_value=4e-11) | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 | chr5:2089754-2090313 REVERSE LENGTH=158;; (*ITAG) Solyc03g058330.2.1 (e_value=1e-12) genomic_reference:SL2.40ch03 gene_region:21222544-21223828 transcript_region:SL2.40ch03:21222544..21223828+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018562g0010.1 protein AED:0.23 eAED:0.46 QI:56|0|0|1|0|0|2|0|44; (*GB) gi|316307581|gb|ADU56495.1| (e_value=8e-16) PsbA [uncultured freshwater phytoplankton];; (*SWP) sp|Q3MAB1|PSBA2_ANAVT (e_value=1e-16) Photosystem Q(B) protein 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psbA2 PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=2e-17) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc01g048590.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:40029756-40030127 transcript_region:SL2.40ch01:40029756..40030127+ go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q6W3U7_9BRYO); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00007097g0001.1 protein AED:0.23 eAED:0.43 QI:0|0|0|1|0|0|4|0|222; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00019152g0002.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|0.5|0.33|3|0|144; (*GB) gi|290489080|gb|ADD30924.1| (e_value=4e-24) putative RF1 protein [Trochodendron aralioides];; (*SWP) sp|Q8S8U2|YCF1_ATRBE (e_value=3e-25) Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=4e-24) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021310.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00033720g0006.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|0|0|4|0|329; (*GB) gi|296245403|gb|ADH03020.1| (e_value=4e-109) polygalacturonase inhibiting protein [Capsicum annuum];; (*SWP) sp|Q05091|PGIP_PYRCO (e_value=2e-63) Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1;; (*TAIR) AT5G06860.1 (e_value=9e-62) | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhibiting protein 1 | chr5:2132373-2133434 FORWARD LENGTH=330;; (*ITAG) Solyc09g014480.1.1 (e_value=8e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6096749-6097756 transcript_region:SL2.40ch09:6096749..6097756- go_terms:GO:0004675 functional_description:"Polygalacturonase inhibitor protein (AHRD V1 ***- Q40160_SOLLC); contains Interpro domain(s) IPR013210 Leucine-rich repeat, N-terminal "; GO:0004675 NbS00033720g0004.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|0|0|3|0|123; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-14) hypothetical protein [Nicotiana tabacum]; NbS00053743g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|760; (*GB) gi|22209014|gb|AAF20093.2| (e_value=0.0) putative ethylene receptor [Nicotiana tabacum];; (*SWP) sp|Q9ZTP3|EIN4_ARATH (e_value=0.0) Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1;; (*TAIR) AT3G04580.2 (e_value=0.0) | Symbols: EIN4 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:1235576-1237965 REVERSE LENGTH=766;; (*ITAG) Solyc05g055070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64005873-64009896 transcript_region:SL2.40ch05:64005873..64009896- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** C0ILN8_COFCA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0004872,GO:0051740,GO:0004696 NbS00059453g0003.1 protein AED:0.08 eAED:0.13 QI:0|0.71|0.37|1|0.85|0.87|8|51|327; (*GB) gi|359491935|ref|XP_002274003.2| (e_value=8e-107) PREDICTED: uncharacterized protein LOC100259801 [Vitis vinifera];; (*TAIR) AT1G76630.1 (e_value=8e-91) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1140;; (*ITAG) Solyc04g082980.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00000147g0004.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|0.5|0.33|3|216|330; (*GB) gi|242032759|ref|XP_002463774.1| (e_value=7e-66) hypothetical protein SORBIDRAFT_01g005940 [Sorghum bicolor];; (*TAIR) AT3G42860.1 (e_value=3e-60) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:14946458-14948097 REVERSE LENGTH=372;; (*ITAG) Solyc01g097070.2.1 (e_value=1e-125) genomic_reference:SL2.40ch01 gene_region:79791679-79797905 transcript_region:SL2.40ch01:79791679..79797905+ go_terms:GO:0008270 functional_description:"DNA topoisomerase (AHRD V1 *--- B4Q9Z3_DROSI); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00000147g0002.1 protein AED:0.21 eAED:0.28 QI:0|0|0|1|1|1|2|0|87 NbS00022707g0003.1 protein AED:0.01 eAED:0.15 QI:0|1|0.33|1|1|1|3|0|445; (*GB) gi|225444177|ref|XP_002269170.1| (e_value=1e-121) PREDICTED: probable WRKY transcription factor 14-like [Vitis vinifera];; (*SWP) sp|Q9SA80|WRK14_ARATH (e_value=2e-83) Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2;; (*TAIR) AT1G30650.1 (e_value=1e-84) | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-binding protein 14 | chr1:10868612-10870973 FORWARD LENGTH=430;; (*ITAG) Solyc02g021680.2.1 (e_value=1e-145) genomic_reference:SL2.40ch02 gene_region:14206227-14209227 transcript_region:SL2.40ch02:14206227..14209227+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 37 (AHRD V1 *-*- Q6IEP4_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00023976g0008.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.75|0|0|4|0|245; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=7e-26) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc07g038000.1.1 (e_value=5e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:41998507-41999357 transcript_region:SL2.40ch07:41998507..41999357+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR)"; NbS00059878g0002.1 protein AED:0.08 eAED:0.08 QI:281|0|0.5|1|0|0.5|2|218|141; (*GB) gi|224057529|ref|XP_002299252.1| (e_value=4e-35) predicted protein [Populus trichocarpa]; NbS00021944g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|60|359; (*GB) gi|407942|gb|AAA81891.1| (e_value=0.0) epoxide hydrolase [Solanum tuberosum];; (*SWP) sp|Q6Q2C2|HYES_PIG (e_value=2e-44) Epoxide hydrolase 2 OS=Sus scrofa GN=EPHX2 PE=2 SV=1;; (*TAIR) AT4G02340.1 (e_value=3e-129) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc05g054350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63421809-63424843 transcript_region:SL2.40ch05:63421809..63424843- go_terms:GO:0004301 functional_description:"Epoxide hydrolase (AHRD V1 **** Q41414_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00046827g0005.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|136; (*GB) gi|57013898|ref|YP_173372.1| (e_value=9e-65) hypothetical protein NitaMp025 [Nicotiana tabacum]; NbS00046827g0006.1 protein AED:0.31 eAED:0.35 QI:7|0|0|1|0|0|2|0|162; (*GB) gi|57013898|ref|YP_173372.1| (e_value=1e-39) hypothetical protein NitaMp025 [Nicotiana tabacum];; (*ITAG) Solyc11g056390.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43124138-43124320 transcript_region:SL2.40ch11:43124138..43124320+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057123g0005.1 protein AED:0.20 eAED:0.20 QI:282|1|1|1|1|1|9|143|411; (*GB) gi|12229785|sp|O04937.1|DHEA_NICPL (e_value=0.0) RecName: Full=Glutamate dehydrogenase A; Short=GDH A;; (*SWP) sp|O04937|DHEA_NICPL (e_value=0.0) Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1;; (*TAIR) AT5G07440.2 (e_value=0.0) | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2356153-2358012 FORWARD LENGTH=411;; (*ITAG) Solyc03g094010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49163343-49166873 transcript_region:SL2.40ch03:49163343..49166873- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q94IA5_BRANA); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00057123g0004.1 protein AED:0.26 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|105 NbS00013363g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.87|0.77|1|1|1|9|0|835; (*GB) gi|98962497|gb|ABF59516.1| (e_value=0.0) putative spindle disassembly related protein CDC48 [Nicotiana tabacum];; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00034033g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.33|1|0.8|1|6|496|184; (*GB) gi|225432002|ref|XP_002279358.1| (e_value=8e-113) PREDICTED: probable prefoldin subunit 3 [Vitis vinifera];; (*SWP) sp|P57741|PFD3_ARATH (e_value=5e-107) Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1;; (*TAIR) AT5G49510.2 (e_value=4e-108) | Symbols: PFD3 | prefoldin 3 | chr5:20080729-20082456 FORWARD LENGTH=195;; (*ITAG) Solyc05g053390.2.1 (e_value=3e-116) genomic_reference:SL2.40ch05 gene_region:62636005-62641398 transcript_region:SL2.40ch05:62636005..62641398- go_terms:GO:0015631 functional_description:"Prefoldin subunit 3 (AHRD V1 ***- B6TKE7_MAIZE); contains Interpro domain(s) IPR016655 Prefoldin, subunit 3 "; GO:0015631 NbS00006201g0013.1 protein AED:0.31 eAED:0.31 QI:388|0.25|0.2|0.6|0.5|0.4|5|0|148; (*GB) gi|255568758|ref|XP_002525350.1| (e_value=3e-37) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=9e-31) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=6e-32) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=3e-63) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00006201g0004.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|495; (*GB) gi|224085089|ref|XP_002307486.1| (e_value=3e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHX3|LRKS6_ARATH (e_value=2e-139) L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana GN=LECRKS6 PE=2 SV=1;; (*TAIR) AT5G42120.1 (e_value=2e-140) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:16833073-16835148 REVERSE LENGTH=691;; (*ITAG) Solyc04g071000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55456739-55458772 transcript_region:SL2.40ch04:55456739..55458772- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM22_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00006201g0014.1 protein AED:0.32 eAED:0.35 QI:314|0.5|0.42|1|0.83|0.71|7|738|208; (*GB) gi|350534954|ref|NP_001233912.1| (e_value=7e-51) E4/E8 binding protein-1 [Solanum lycopersicum];; (*ITAG) Solyc04g070990.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:55434528-55443611 transcript_region:SL2.40ch04:55434528..55443611- go_terms:GO:0003677 functional_description:"PHD-finger family protein expressed (AHRD V1 *--- Q53MN0_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00006201g0015.1 protein AED:0.32 eAED:0.36 QI:0|0|0.25|0.75|0|0.5|4|341|433; (*GB) gi|255570338|ref|XP_002526128.1| (e_value=2e-178) mitochondrial carrier protein, putative [Ricinus communis];; (*SWP) sp|Q9FHX2|MFL1_ARATH (e_value=9e-169) Protein MITOFERRINLIKE 1, chloroplastic OS=Arabidopsis thaliana GN=MFL1 PE=2 SV=1;; (*TAIR) AT5G42130.1 (e_value=7e-170) | Symbols: | Mitochondrial substrate carrier family protein | chr5:16835572-16836810 REVERSE LENGTH=412;; (*ITAG) Solyc04g071010.2.1 (e_value=2e-86) genomic_reference:SL2.40ch04 gene_region:55468553-55470387 transcript_region:SL2.40ch04:55468553..55470387- go_terms:GO:0016530 functional_description:"Mitochondrial carrier protein-like (AHRD V1 *-*- Q9FHX2_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016530 NbS00048743g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|135; (*GB) gi|255564359|ref|XP_002523176.1| (e_value=4e-47) Rhicadhesin receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q6K5P8|GL23_ORYSJ (e_value=1e-43) Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1;; (*TAIR) AT5G38940.1 (e_value=6e-39) | Symbols: | RmlC-like cupins superfamily protein | chr5:15588771-15589526 FORWARD LENGTH=223;; (*ITAG) Solyc10g078840.1.1 (e_value=4e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00005248g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|2|620|481; (*GB) gi|350536877|ref|NP_001234269.1| (e_value=0.0) UDP-sulfoquinovose synthase [Solanum lycopersicum];; (*SWP) sp|Q84KI6|SQD1_SPIOL (e_value=0.0) UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1;; (*TAIR) AT4G33030.1 (e_value=0.0) | Symbols: SQD1 | sulfoquinovosyldiacylglycerol 1 | chr4:15936051-15937566 FORWARD LENGTH=477;; (*ITAG) Solyc08g063080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49841689-49846002 transcript_region:SL2.40ch08:49841689..49846002- go_terms:GO:0008146,GO:0008270 functional_description:"UDP-sulfoquinovose synthase (AHRD V1 ***- C0LIR3_SOLLC); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008146,GO:0008270 NbS00005248g0008.1 protein AED:0.25 eAED:0.33 QI:0|0.8|0.66|1|0.4|0.33|6|0|261; (*GB) gi|296081650|emb|CBI20655.3| (e_value=2e-96) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11910.1 (e_value=5e-96) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:3836560-3838182 REVERSE LENGTH=297;; (*ITAG) Solyc08g063070.2.1 (e_value=1e-144) genomic_reference:SL2.40ch08 gene_region:49834397-49841552 transcript_region:SL2.40ch08:49834397..49841552+ go_terms:GO:0003824 functional_description:"Esterase/lipase/thioesterase (Fragment) (AHRD V1 **-- B3VW20_POPTN); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0003824 NbS00017799g0008.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|1|1|2|0|209; (*GB) gi|225445162|ref|XP_002280698.1| (e_value=3e-30) PREDICTED: galactose oxidase-like [Vitis vinifera];; (*TAIR) AT1G75620.1 (e_value=7e-23) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc07g021020.2.1 (e_value=7e-89) genomic_reference:SL2.40ch07 gene_region:15379657-15383754 transcript_region:SL2.40ch07:15379657..15383754- functional_description:"Glyoxal oxidase-like (AHRD V1 ***- Q8S198_ORYSJ); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00017799g0009.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|432; (*GB) gi|297738786|emb|CBI28031.3| (e_value=5e-156) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67290.1 (e_value=1e-137) | Symbols: | glyoxal oxidase-related protein | chr1:25191168-25193160 REVERSE LENGTH=615;; (*ITAG) Solyc07g021020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:15379657-15383754 transcript_region:SL2.40ch07:15379657..15383754- functional_description:"Glyoxal oxidase-like (AHRD V1 ***- Q8S198_ORYSJ); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00055076g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|296087172|emb|CBI33546.3| (e_value=5e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g091380.1.1 (e_value=9e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47264046-47264363 transcript_region:SL2.40ch02:47264046..47264363- functional_description:"Unknown Protein (AHRD V1)"; NbS00055076g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224065162|ref|XP_002301695.1| (e_value=1e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=7e-46) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT5G37840.1 (e_value=2e-48) | Symbols: | BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15062192-15063327 REVERSE LENGTH=214;; (*ITAG) Solyc02g091360.1.1 (e_value=8e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47258561-47259061 transcript_region:SL2.40ch02:47258561..47259061+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036247g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|125; (*ITAG) Solyc01g108640.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00001897g0004.1 protein AED:0.21 eAED:0.29 QI:0|0.66|0.57|1|0.5|0.57|7|475|279; (*GB) gi|224081793|ref|XP_002306492.1| (e_value=2e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9QXE7|TBL1X_MOUSE (e_value=8e-78) F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2;; (*TAIR) AT5G67320.1 (e_value=5e-98) | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613;; (*ITAG) Solyc04g078320.2.1 (e_value=1e-106) genomic_reference:SL2.40ch04 gene_region:60664444-60675242 transcript_region:SL2.40ch04:60664444..60675242- go_terms:GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00039851g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|0.66|1|1|3|76|79; (*GB) gi|57117523|gb|AAW33981.1| (e_value=2e-23) unknown [Ammopiptanthus mongolicus];; (*TAIR) AT5G66780.1 (e_value=5e-24) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26663627-26664196 FORWARD LENGTH=121;; (*ITAG) Solyc02g062770.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29127828-29129196 transcript_region:SL2.40ch02:29127828..29129196- functional_description:"Late embryogenesis abundant protein (AHRD V1 *-*- Q3I3Y9_PICGL)"; NbS00051591g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.88|0.7|1|0.77|0.9|10|302|486; (*GB) gi|350534814|ref|NP_001233905.1| (e_value=0.0) B2-type cyclin dependent kinase [Solanum lycopersicum];; (*SWP) sp|Q38775|CDC2D_ANTMA (e_value=0.0) Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1;; (*TAIR) AT1G20930.1 (e_value=0.0) | Symbols: CDKB2;2 | cyclin-dependent kinase B2;2 | chr1:7292752-7294664 REVERSE LENGTH=315;; (*ITAG) Solyc04g082840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63962851-63964812 transcript_region:SL2.40ch04:63962851..63964812- go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** D0P087_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00051591g0008.1 protein AED:0.22 eAED:0.22 QI:326|0.9|0.90|1|0.5|0.36|11|758|422; (*GB) gi|224065633|ref|XP_002301894.1| (e_value=4e-178) predicted protein [Populus trichocarpa];; (*TAIR) AT1G20925.1 (e_value=2e-161) | Symbols: | Auxin efflux carrier family protein | chr1:7289973-7292507 FORWARD LENGTH=472;; (*ITAG) Solyc04g082830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63958149-63962637 transcript_region:SL2.40ch04:63958149..63962637+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00000425g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|255561767|ref|XP_002521893.1| (e_value=5e-38) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G37870.1 (e_value=2e-35) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc03g079880.2.1 (e_value=2e-22) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00000425g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.75|1|0.33|0.75|4|434|372; (*GB) gi|296086732|emb|CBI32367.3| (e_value=3e-169) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19160.1 (e_value=4e-159) | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 | chr5:6430725-6432456 FORWARD LENGTH=464;; (*ITAG) Solyc01g079850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71488405-71491992 transcript_region:SL2.40ch01:71488405..71491992- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00000425g0012.1 protein AED:0.35 eAED:0.35 QI:227|0.6|0.45|0.90|0.5|0.54|11|0|427; (*GB) gi|224110476|ref|XP_002315531.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65041|UBA3_ARATH (e_value=0.0) NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2;; (*TAIR) AT5G19180.1 (e_value=0.0) | Symbols: ECR1 | E1 C-terminal related 1 | chr5:6453375-6455750 FORWARD LENGTH=454;; (*ITAG) Solyc01g079840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71475303-71486951 transcript_region:SL2.40ch01:71475303..71486951- go_terms:GO:0019781 functional_description:"NEDD8-activating enzyme E1 catalytic subunit (AHRD V1 **** B6TJH0_MAIZE); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019781 NbS00043916g0002.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.25|0.75|1|1|4|0|146; (*GB) gi|255546265|ref|XP_002514192.1| (e_value=1e-67) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=7e-34) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G29230.1 (e_value=2e-67) | Symbols: anac075, NAC075 | NAC domain containing protein 75 | chr4:14410338-14414956 FORWARD LENGTH=498;; (*ITAG) Solyc05g026180.1.1 (e_value=5e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40024726-40030220 transcript_region:SL2.40ch05:40024726..40030220+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H8X7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00043916g0001.1 protein AED:0.24 eAED:0.24 QI:34|0|0.5|0.5|1|1|2|0|89 NbS00015825g0001.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|1493; (*GB) gi|255562960|ref|XP_002522485.1| (e_value=0.0) pattern formation protein, putative [Ricinus communis];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc04g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:374381-379758 transcript_region:SL2.40ch04:374381..379758+ go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00019144g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|0.66|0.25|4|0|150; (*GB) gi|162955767|gb|ABY25273.1| (e_value=5e-88) putrescine N-methyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9SEH4|PMT4_TOBAC (e_value=4e-89) Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1;; (*TAIR) AT1G23820.1 (e_value=9e-66) | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378;; (*ITAG) Solyc08g014310.2.1 (e_value=4e-85) genomic_reference:SL2.40ch08 gene_region:4025809-4029506 transcript_region:SL2.40ch08:4025809..4029506+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A7DY57_COCOF); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00019144g0005.1 protein AED:0.44 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|86 NbS00025886g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|227; (*GB) gi|225442749|ref|XP_002284974.1| (e_value=9e-78) PREDICTED: gibberellin 20 oxidase 1 [Vitis vinifera];; (*SWP) sp|Q9C971|G3OX4_ARATH (e_value=2e-12) Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1;; (*TAIR) AT1G52800.1 (e_value=3e-67) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067870.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00027809g0005.1 protein AED:0.20 eAED:0.23 QI:0|1|0.5|1|1|1|4|0|611; (*GB) gi|224098105|ref|XP_002311120.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P09960|LKHA4_HUMAN (e_value=9e-116) Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2;; (*TAIR) AT5G13520.1 (e_value=0.0) | Symbols: | peptidase M1 family protein | chr5:4342117-4344571 REVERSE LENGTH=616;; (*ITAG) Solyc04g049720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42386347-42391422 transcript_region:SL2.40ch04:42386347..42391422+ go_terms:GO:0004222,GO:0070006 functional_description:"Leukotriene-A4 hydrolase-like protein (AHRD V1 ***- Q9FY49_ARATH); contains Interpro domain(s) IPR001930 Peptidase M1, membrane alanine aminopeptidase "; GO:0004222,GO:0070006 NbS00008049g0016.1 protein AED:0.40 eAED:0.40 QI:0|1|0.75|1|0.33|0.5|4|87|117; (*GB) gi|225437830|ref|XP_002262985.1| (e_value=3e-60) PREDICTED: bet1-like SNARE 1-1 [Vitis vinifera];; (*SWP) sp|Q9M2J9|BET11_ARATH (e_value=2e-54) Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1;; (*TAIR) AT3G58170.1 (e_value=2e-55) | Symbols: ATBS14A, ATBET11, BET11, BS14A | BET1P/SFT1P-like protein 14A | chr3:21542632-21543775 REVERSE LENGTH=122;; (*ITAG) Solyc06g008520.2.1 (e_value=1e-64) genomic_reference:SL2.40ch06 gene_region:2406671-2410266 transcript_region:SL2.40ch06:2406671..2410266+ go_terms:GO:0005484 functional_description:"BET1 (AHRD V1 ***- B6U0C6_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00008049g0015.1 protein AED:0.09 eAED:0.09 QI:132|0.85|0.85|1|0.8|0.80|21|443|990; (*GB) gi|297744119|emb|CBI37089.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZP54|PARP1_ARATH (e_value=0.0) Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2;; (*TAIR) AT2G31320.1 (e_value=0.0) | Symbols: PARP2, ATPARP2 | poly(ADP-ribose) polymerase 2 | chr2:13354046-13359578 REVERSE LENGTH=983;; (*ITAG) Solyc03g117970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61001222-61010499 transcript_region:SL2.40ch03:61001222..61010499+ go_terms:GO:0003950 functional_description:"Novel protein similar to vertebrate ADP-ribosyltransferase (NAD+ poly (ADP-ribose) polymerase) (ADPRT) (AHRD V1 **** Q5RHR0_DANRE); contains Interpro domain(s) IPR008288 NAD+ ADP-ribosyltransferase "; GO:0003950 NbS00008049g0017.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|0.66|1|1|3|0|213; (*GB) gi|225437836|ref|XP_002263559.1| (e_value=4e-66) PREDICTED: LOB domain-containing protein 16 [Vitis vinifera];; (*SWP) sp|Q9SLB7|LBD16_ARATH (e_value=3e-53) LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1;; (*TAIR) AT2G42430.1 (e_value=3e-54) | Symbols: LBD16, ASL18 | lateral organ boundaries-domain 16 | chr2:17663668-17665153 FORWARD LENGTH=245;; (*ITAG) Solyc09g066260.2.1 (e_value=5e-75) genomic_reference:SL2.40ch09 gene_region:60284729-60286423 transcript_region:SL2.40ch09:60284729..60286423+ functional_description:"LOB domain protein-like (AHRD V1 *-*- Q6K713_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00043474g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|3|0|208; (*GB) gi|388516681|gb|AFK46402.1| (e_value=4e-100) unknown [Lotus japonicus];; (*SWP) sp|Q9LZX1|LOR15_ARATH (e_value=3e-87) Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1;; (*TAIR) AT5G01750.2 (e_value=2e-88) | Symbols: | Protein of unknown function (DUF567) | chr5:290034-291109 FORWARD LENGTH=217;; (*ITAG) Solyc10g085420.1.1 (e_value=7e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63936550-63937877 transcript_region:SL2.40ch10:63936550..63937877+ functional_description:"Os03g0816700 protein (Fragment) (AHRD V1 ***- Q0DMC9_ORYSJ); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00059862g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|1|1|3|0|101; (*GB) gi|296082018|emb|CBI21023.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G18660.1 (e_value=4e-13) | Symbols: PNP-A | plant natriuretic peptide A | chr2:8091032-8091644 REVERSE LENGTH=130;; (*ITAG) Solyc08g061060.1.1 (e_value=5e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:43685752-43687014 transcript_region:SL2.40ch08:43685752..43687014- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN22_CITUN); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00001991g0010.1 protein AED:0.23 eAED:0.25 QI:195|0.66|0.75|1|1|0.75|4|84|411; (*GB) gi|359475266|ref|XP_003631627.1| (e_value=1e-159) PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5-like [Vitis vinifera];; (*SWP) sp|Q9LHN4|LPAT5_ARATH (e_value=6e-143) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1;; (*TAIR) AT3G18850.4 (e_value=4e-144) | Symbols: LPAT5 | lysophosphatidyl acyltransferase 5 | chr3:6499529-6500840 REVERSE LENGTH=375;; (*ITAG) Solyc01g109370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88108101-88111214 transcript_region:SL2.40ch01:88108101..88111214+ go_terms:GO:0005515,GO:0003841 functional_description:"1-acylglycerol-3-phosphate acyltransferase (AHRD V1 **** A2TF19_BRAJU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0005515,GO:0003841 NbS00001991g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.7|0.72|0.90|0.8|0.90|11|0|395; (*GB) gi|1841468|emb|CAA71881.1| (e_value=0.0) Tyrosyl-tRNA synthetase [Nicotiana tabacum];; (*SWP) sp|Q5UPJ7|SYY_MIMIV (e_value=8e-75) Tyrosine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1;; (*TAIR) AT2G33840.1 (e_value=7e-178) | Symbols: | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr2:14315011-14317329 FORWARD LENGTH=385;; (*ITAG) Solyc01g109360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88097789-88103284 transcript_region:SL2.40ch01:88097789..88103284+ go_terms:GO:0004831,GO:0005153 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 **** P93363_TOBAC); contains Interpro domain(s) IPR016485 Tyrosine tRNA ligase, archaeal/eukaryotic "; GO:0004831,GO:0005153 NbS00008266g0003.1 protein AED:0.12 eAED:0.21 QI:0|1|0|1|1|1|3|0|205; (*GB) gi|62733643|gb|AAX95759.1| (e_value=1e-39) T10O24.15, related [Solanum lycopersicum];; (*TAIR) AT5G50090.1 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20369961-20370878 FORWARD LENGTH=159;; (*ITAG) Solyc03g114020.2.1 (e_value=1e-76) genomic_reference:SL2.40ch03 gene_region:58111867-58113093 transcript_region:SL2.40ch03:58111867..58113093- functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00000474g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.95|0.95|1|0.77|0.82|23|965|684; (*GB) gi|359474143|ref|XP_002280701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249628 [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=7e-86) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT4G10730.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g083040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62790918-62801166 transcript_region:SL2.40ch08:62790918..62801166- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000474g0007.1 protein AED:0.25 eAED:0.31 QI:202|1|0.83|1|1|1|6|0|268; (*GB) gi|225426615|ref|XP_002280751.1| (e_value=7e-69) PREDICTED: uncharacterized protein LOC100266795 isoform 1 [Vitis vinifera];; (*TAIR) AT5G41960.1 (e_value=5e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16789760-16790868 FORWARD LENGTH=217;; (*ITAG) Solyc08g083030.2.1 (e_value=6e-74) genomic_reference:SL2.40ch08 gene_region:62787635-62790415 transcript_region:SL2.40ch08:62787635..62790415- functional_description:"Unknown Protein (AHRD V1)"; NbS00000474g0011.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|239; (*GB) gi|225426609|ref|XP_002280587.1| (e_value=1e-27) PREDICTED: uncharacterized protein At1g01500-like [Vitis vinifera];; (*TAIR) AT4G24110.1 (e_value=3e-16) | Symbols: | unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12520010-12520762 REVERSE LENGTH=250;; (*ITAG) Solyc08g083050.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62802131-62802859 transcript_region:SL2.40ch08:62802131..62802859- functional_description:"Unknown Protein (AHRD V1)"; NbS00014176g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|740; (*GB) gi|350537305|ref|NP_001234288.1| (e_value=0.0) SBT2 protein precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G51750.1 (e_value=0.0) | Symbols: ATSBT1.3, SBT1.3 | subtilase 1.3 | chr5:21020266-21022608 FORWARD LENGTH=780;; (*ITAG) Solyc03g006970.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:1528393-1530720 transcript_region:SL2.40ch03:1528393..1530720- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- B6UDX1_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000183 Orn/DAP/Arg decarboxylase 2 IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0004252 NbS00014176g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|356534181|ref|XP_003535636.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 6-like [Glycine max];; (*SWP) sp|Q9C6L5|KCS5_ARATH (e_value=2e-135) 3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=1 SV=1;; (*TAIR) AT1G25450.1 (e_value=2e-136) | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase 5 | chr1:8938679-8940282 REVERSE LENGTH=492;; (*ITAG) Solyc03g078330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:44110791-44112218 transcript_region:SL2.40ch03:44110791..44112218- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00006750g0007.1 protein AED:0.20 eAED:0.21 QI:11|0.77|0.7|1|0.55|0.6|10|0|474; (*GB) gi|225424244|ref|XP_002284457.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-63) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G01480.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:216980-220341 FORWARD LENGTH=567;; (*ITAG) Solyc05g007960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2377588-2388715 transcript_region:SL2.40ch05:2377588..2388715- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 ***- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00050068g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.8|0.93|0.85|0.93|15|0|481; (*GB) gi|224106732|ref|XP_002314265.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5F471|PP6R3_CHICK (e_value=3e-54) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1;; (*TAIR) AT3G45190.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr3:16541994-16548161 REVERSE LENGTH=789;; (*ITAG) Solyc11g069490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51168203-51179394 transcript_region:SL2.40ch11:51168203..51179394+ functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 *-*- SAPS3_CHICK); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00041107g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.33|1|0.2|0.33|6|134|284; (*GB) gi|225435642|ref|XP_002285662.1| (e_value=2e-109) PREDICTED: metal tolerance protein 4 [Vitis vinifera];; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=3e-106) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=7e-104) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc01g006150.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:797548-802155 transcript_region:SL2.40ch01:797548..802155- go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 ***- FIEF_KLEPN); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00001483g0005.1 protein AED:0.16 eAED:0.17 QI:15|0.75|0.55|1|0.87|0.77|9|0|1028; (*GB) gi|350538145|ref|NP_001234073.1| (e_value=0.0) calcium-transporting ATPase, endoplasmic reticulum-type [Solanum lycopersicum];; (*SWP) sp|Q42883|ECAP_SOLLC (e_value=0.0) Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1;; (*TAIR) AT4G00900.1 (e_value=0.0) | Symbols: ECA2, ATECA2 | ER-type Ca2+-ATPase 2 | chr4:382690-386226 REVERSE LENGTH=1054;; (*ITAG) Solyc01g096190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79045830-79051697 transcript_region:SL2.40ch01:79045830..79051697+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR005782 ATPase, P-type, calcium-transporting "; GO:0016020,GO:0008152,GO:0016021 NbS00001483g0110.1 protein AED:0.04 eAED:0.04 QI:309|1|1|1|1|1|2|195|250 NbS00001483g0103.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|490 NbS00001483g0116.1 protein AED:0.23 eAED:0.23 QI:0|0|1|1|0|0.5|2|302|554 NbS00001483g0114.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|1|0.8|5|0|1265 NbS00001483g0115.1 protein AED:0.44 eAED:0.45 QI:0|0.5|0|1|0.5|0.66|3|0|291 NbS00001483g0205.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|344 NbS00001483g0203.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|124 NbS00001483g0213.1 protein AED:0.46 eAED:0.46 QI:0|0.66|0.25|1|0.66|0.5|4|0|264 NbS00001483g0202.1 protein AED:0.53 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|109 NbS00008491g0002.1 protein AED:0.08 eAED:0.08 QI:677|1|1|1|0.5|0.66|3|427|228; (*GB) gi|225449738|ref|XP_002270953.1| (e_value=1e-89) PREDICTED: RING-H2 finger protein ATL38 [Vitis vinifera];; (*SWP) sp|Q9M0R5|ATL36_ARATH (e_value=9e-17) Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1;; (*TAIR) AT4G09120.1 (e_value=7e-18) | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035 FORWARD LENGTH=345;; (*ITAG) Solyc11g007530.1.1 (e_value=2e-121) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1787389-1790741 transcript_region:SL2.40ch11:1787389..1790741+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005055g0005.1 protein AED:0.01 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|555; (*GB) gi|332071121|gb|AED99879.1| (e_value=0.0) cytochrome P450, partial [Panax notoginseng];; (*SWP) sp|O48927|C78A3_SOYBN (e_value=0.0) Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1;; (*TAIR) AT2G46660.1 (e_value=0.0) | Symbols: CYP78A6 | cytochrome P450, family 78, subfamily A, polypeptide 6 | chr2:19153602-19155417 REVERSE LENGTH=530;; (*ITAG) Solyc01g096280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79122254-79124436 transcript_region:SL2.40ch01:79122254..79124436- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010423g0006.1 protein AED:0.40 eAED:0.40 QI:175|0|0.5|1|0|0|2|0|141; (*GB) gi|359476094|ref|XP_002282215.2| (e_value=8e-40) PREDICTED: uncharacterized protein LOC100259398 [Vitis vinifera];; (*ITAG) Solyc08g067390.2.1 (e_value=7e-58) genomic_reference:SL2.40ch08 gene_region:53631177-53633631 transcript_region:SL2.40ch08:53631177..53633631+ functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 *-*- B6RN16_9ROSI); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00010423g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|460; (*GB) gi|224127999|ref|XP_002320216.1| (e_value=6e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46630.1 (e_value=1e-18) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). | chr2:19145529-19146713 FORWARD LENGTH=394;; (*ITAG) Solyc08g067370.1.1 (e_value=1e-106) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:53623441-53624739 transcript_region:SL2.40ch08:53623441..53624739- functional_description:"Unknown Protein (AHRD V1)"; NbS00012393g0001.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|114329698|ref|YP_740519.1| (e_value=5e-17) hypothetical chloroplast RF2 [Citrus sinensis];; (*SWP) sp|Q09MB4|YCF2_CITSI (e_value=1e-18) Protein ycf2 OS=Citrus sinensis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-17) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00050365g0007.1 protein AED:0.22 eAED:0.22 QI:116|0.66|0.5|1|0.66|0.5|4|377|363; (*GB) gi|225459615|ref|XP_002285873.1| (e_value=2e-163) PREDICTED: N-glycosylase/DNA lyase [Vitis vinifera];; (*SWP) sp|O15527|OGG1_HUMAN (e_value=5e-60) N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2;; (*TAIR) AT1G21710.1 (e_value=2e-147) | Symbols: OGG1, ATOGG1 | 8-oxoguanine-DNA glycosylase 1 | chr1:7624439-7625869 FORWARD LENGTH=365;; (*ITAG) Solyc11g018520.1.1 (e_value=1e-133) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:8638682-8640219 transcript_region:SL2.40ch11:8638682..8640219- go_terms:GO:0003677,GO:0006289,GO:0006281 functional_description:"8-oxoguanine DNA glycosylase (AHRD V1 ***- Q0KJ38_POPNI); contains Interpro domain(s) IPR012904 8-oxoguanine DNA glycosylase, N-terminal "; GO:0003677,GO:0006289,GO:0006281 NbS00050365g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.76|0.78|1|0.30|0.5|14|0|492; (*GB) gi|356518798|ref|XP_003528064.1| (e_value=1e-171) PREDICTED: beta-galactosidase 6-like [Glycine max];; (*SWP) sp|Q8GX69|BGA16_ARATH (e_value=4e-167) Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2;; (*TAIR) AT1G77410.1 (e_value=3e-168) | Symbols: BGAL16 | beta-galactosidase 16 | chr1:29088771-29093148 REVERSE LENGTH=815;; (*ITAG) Solyc11g018500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8620702-8629947 transcript_region:SL2.40ch11:8620702..8629947+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- B9GU11_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00009854g0006.1 protein AED:0.08 eAED:0.08 QI:1845|0.77|0.5|1|0.77|0.9|10|0|341; (*GB) gi|225456493|ref|XP_002280913.1| (e_value=1e-162) PREDICTED: protein BONZAI 1 [Vitis vinifera];; (*SWP) sp|Q941L3|BON1_ARATH (e_value=2e-153) Protein BONZAI 1 OS=Arabidopsis thaliana GN=BON1 PE=1 SV=2;; (*TAIR) AT5G61900.3 (e_value=2e-154) | Symbols: BON1, CPN1, BON | Calcium-dependent phospholipid-binding Copine family protein | chr5:24855908-24859150 REVERSE LENGTH=578;; (*ITAG) Solyc06g068840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39045530-39056686 transcript_region:SL2.40ch06:39045530..39056686- go_terms:GO:0005544,GO:0005215 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544,GO:0005215 NbS00009854g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|271; (*GB) gi|373501786|gb|AEY75212.1| (e_value=3e-63) cytochrome P450 CYP716A47 [Panax ginseng];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=5e-46) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36140.1 (e_value=2e-63) | Symbols: CYP716A2 | cytochrome P450, family 716, subfamily A, polypeptide 2 | chr5:14212212-14213259 REVERSE LENGTH=318;; (*ITAG) Solyc05g021390.2.1 (e_value=3e-58) genomic_reference:SL2.40ch05 gene_region:27157336-27159140 transcript_region:SL2.40ch05:27157336..27159140+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00026983g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|389|188; (*GB) gi|224069860|ref|XP_002303058.1| (e_value=7e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25120.1 (e_value=8e-54) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:9149785-9151068 REVERSE LENGTH=189;; (*ITAG) Solyc06g007800.2.1 (e_value=9e-103) genomic_reference:SL2.40ch06 gene_region:1739565-1743762 transcript_region:SL2.40ch06:1739565..1743762+ go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (AHRD V1 *-*- D7L5V0_ARALY); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00026983g0015.1 protein AED:0.23 eAED:0.23 QI:297|0.75|0.8|1|0.75|0.8|5|0|190; (*GB) gi|225463868|ref|XP_002267796.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100246803 [Vitis vinifera];; (*TAIR) AT3G07170.1 (e_value=1e-47) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203;; (*ITAG) Solyc09g059620.2.1 (e_value=4e-90) genomic_reference:SL2.40ch09 gene_region:50519658-50529728 transcript_region:SL2.40ch09:50519658..50529728- go_terms:GO:0016757 functional_description:"SAM domain family protein (AHRD V1 **-- B6TMA1_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0016757 NbS00026983g0011.1 protein AED:0.37 eAED:0.83 QI:33|1|0.5|1|1|1|2|0|146; (*ITAG) Solyc11g013210.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00000502g0007.1 protein AED:0.27 eAED:0.29 QI:0|0.62|0.55|1|0.5|0.33|9|0|435; (*GB) gi|224110908|ref|XP_002315678.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G70550.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr1:26597510-26599888 FORWARD LENGTH=465;; (*ITAG) Solyc05g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15635-18582 transcript_region:SL2.40ch05:15635..18582- functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00028268g0004.1 protein AED:0.18 eAED:0.18 QI:117|1|0|1|1|1|2|639|322; (*GB) gi|225430842|ref|XP_002273547.1| (e_value=2e-121) PREDICTED: BES1/BZR1 homolog protein 2-like [Vitis vinifera];; (*SWP) sp|Q94A43|BEH2_ARATH (e_value=2e-87) BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1;; (*TAIR) AT1G19350.3 (e_value=4e-81) | Symbols: BES1, BZR2 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:6688680-6690165 FORWARD LENGTH=357;; (*ITAG) Solyc02g063010.2.1 (e_value=4e-149) genomic_reference:SL2.40ch02 gene_region:29608266-29610489 transcript_region:SL2.40ch02:29608266..29610489- go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00059209g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.77|1|1|1|9|0|578; (*GB) gi|309401691|gb|ADO79931.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana tabacum];; (*SWP) sp|Q6NLQ6|CDPKW_ARATH (e_value=0.0) Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1;; (*TAIR) AT3G57530.1 (e_value=0.0) | Symbols: CPK32, ATCPK32, CDPK32 | calcium-dependent protein kinase 32 | chr3:21296898-21299351 REVERSE LENGTH=538;; (*ITAG) Solyc10g079130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60064941-60068542 transcript_region:SL2.40ch10:60064941..60068542- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00016823g0007.1 protein AED:0.00 eAED:0.00 QI:1231|1|1|1|1|1|4|351|123; (*GB) gi|255570120|ref|XP_002526022.1| (e_value=3e-75) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G14990.1 (e_value=1e-69) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5167354-5168151 REVERSE LENGTH=122;; (*ITAG) Solyc04g007700.2.1 (e_value=3e-81) genomic_reference:SL2.40ch04 gene_region:1387414-1388716 transcript_region:SL2.40ch04:1387414..1388716+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016823g0009.1 protein AED:0.29 eAED:0.31 QI:0|0.57|0.37|0.75|0.71|0.62|8|0|380; (*GB) gi|350539607|ref|NP_001233960.1| (e_value=0.0) mitogen-activated protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9C9U4|MPK15_ARATH (e_value=9e-109) Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3;; (*TAIR) AT1G73670.1 (e_value=7e-110) | Symbols: ATMPK15, MPK15 | MAP kinase 15 | chr1:27700212-27703168 FORWARD LENGTH=576;; (*ITAG) Solyc04g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1389688-1396477 transcript_region:SL2.40ch04:1389688..1396477- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase (AHRD V1 ***- Q1W2K7_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006953g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.77|0.88|1|1|9|248|396; (*GB) gi|225447197|ref|XP_002277241.1| (e_value=2e-167) PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8L633|RNZC_ARATH (e_value=5e-157) Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1;; (*TAIR) AT2G04530.1 (e_value=4e-158) | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreductase superfamily protein | chr2:1576808-1578611 FORWARD LENGTH=354;; (*ITAG) Solyc05g055350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64180131-64184890 transcript_region:SL2.40ch05:64180131..64184890- go_terms:GO:0042781 functional_description:"Ribonuclease Z family protein (AHRD V1 ***- D0LN77_HALO1)"; GO:0042781 NbS00006953g0014.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|3|273|86; (*GB) gi|350538525|ref|NP_001234347.1| (e_value=5e-44) copper chaperone [Solanum lycopersicum];; (*TAIR) AT1G66240.1 (e_value=1e-39) | Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1 | chr1:24686445-24687327 REVERSE LENGTH=106;; (*ITAG) Solyc05g055310.2.1 (e_value=1e-46) genomic_reference:SL2.40ch05 gene_region:64143436-64146371 transcript_region:SL2.40ch05:64143436..64146371+ go_terms:GO:0032767,GO:0016531 functional_description:"Copper chaperone (AHRD V1 **** Q84KJ2_SOLLC); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0032767,GO:0016531 NbS00031428g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|255559480|ref|XP_002520760.1| (e_value=7e-46) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc09g065040.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58439527-58439943 transcript_region:SL2.40ch09:58439527..58439943- functional_description:"Embryo-abundant protein (Fragment) (AHRD V1 **-- Q3I3X0_PICAB); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00031428g0005.1 protein AED:0.15 eAED:0.15 QI:174|1|1|1|0.66|0.75|4|562|464; (*GB) gi|255559482|ref|XP_002520761.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G19160.1 (e_value=0.0) | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 | chr5:6430725-6432456 FORWARD LENGTH=464;; (*ITAG) Solyc09g065030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00060621g0001.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|478; (*GB) gi|19875|emb|CAA46787.1| (e_value=0.0) glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum];; (*SWP) sp|P31593|GSA_TOBAC (e_value=0.0) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1;; (*TAIR) AT3G48730.1 (e_value=0.0) | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-aminomutase 2 | chr3:18049697-18051550 FORWARD LENGTH=472;; (*ITAG) Solyc04g009200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2695320-2699163 transcript_region:SL2.40ch04:2695320..2699163- go_terms:GO:0005515,GO:0042286 functional_description:"Glutamate-1-semialdehyde-2 1-aminomutase (AHRD V1 **** D7MPQ2_ARALY); contains Interpro domain(s) IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase "; GO:0005515,GO:0042286 NbS00060621g0006.1 protein AED:0.33 eAED:0.33 QI:188|1|0.8|1|0.75|0.8|5|0|193; (*GB) gi|388512163|gb|AFK44143.1| (e_value=5e-112) unknown [Lotus japonicus];; (*TAIR) AT5G11680.1 (e_value=2e-110) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3759463-3760634 FORWARD LENGTH=207;; (*ITAG) Solyc04g009190.2.1 (e_value=2e-123) genomic_reference:SL2.40ch04 gene_region:2692465-2695221 transcript_region:SL2.40ch04:2692465..2695221+ functional_description:"WW domain-binding protein 2 (AHRD V1 **-- WBP2_HUMAN)"; NbS00042735g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|372; (*GB) gi|225439709|ref|XP_002272768.1| (e_value=3e-138) PREDICTED: transcription elongation factor A protein 3 [Vitis vinifera];; (*SWP) sp|P23881|TCEA3_MOUSE (e_value=2e-38) Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3;; (*TAIR) AT2G38560.1 (e_value=3e-127) | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378;; (*ITAG) Solyc05g052190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61613622-61617218 transcript_region:SL2.40ch05:61613622..61617218- go_terms:GO:0005515 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 ***- B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515 NbS00025688g0004.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|110; (*ITAG) Solyc09g059390.2.1 (e_value=9e-22) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00025688g0002.1 protein AED:0.02 eAED:0.02 QI:344|1|0.5|1|0|0|2|0|424; (*GB) gi|359482873|ref|XP_003632856.1| (e_value=1e-93) PREDICTED: transcription factor bHLH87-like [Vitis vinifera];; (*SWP) sp|Q8S3D2|BH087_ARATH (e_value=2e-65) Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1;; (*TAIR) AT3G21330.1 (e_value=1e-66) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7507720-7508841 FORWARD LENGTH=373;; (*ITAG) Solyc03g121240.1.1 (e_value=1e-165) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63458470-63459612 transcript_region:SL2.40ch03:63458470..63459612- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *--* Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00025688g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|57013968|ref|YP_173440.1| (e_value=2e-88) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00025688g0010.1 protein AED:0.19 eAED:0.19 QI:196|0.87|0.77|1|0.75|0.77|9|785|324; (*GB) gi|225442373|ref|XP_002281479.1| (e_value=2e-116) PREDICTED: uncharacterized protein LOC100263418 [Vitis vinifera];; (*TAIR) AT2G25910.2 (e_value=3e-100) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=342;; (*ITAG) Solyc03g121250.2.1 (e_value=4e-116) genomic_reference:SL2.40ch03 gene_region:63467090-63473364 transcript_region:SL2.40ch03:63467090..63473364- go_terms:GO:0003676,GO:0003723,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 ***- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0003723,GO:0005622 NbS00046586g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|0|0|2|0|91; (*GB) gi|169159355|gb|ACA49182.1| (e_value=1e-30) photosystem II D2 protein [Ceratopteris richardii];; (*SWP) sp|A6YG76|PSBD_LEPTE (e_value=6e-31) Photosystem II D2 protein OS=Leptosira terrestris GN=psbD PE=3 SV=1;; (*ITAG) ATCG00270.1 (e_value=8e-32) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353;; (*ITAG) Solyc05g021190.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:26625906-26626816 transcript_region:SL2.40ch05:26625906..26626816+ go_terms:GO:0030077 functional_description:"Photosystem II D2 protein (AHRD V1 ***- B9VL90_9CHLO); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00032586g0015.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0.5|2|0|446; (*GB) gi|359474191|ref|XP_002270742.2| (e_value=4e-148) PREDICTED: uncharacterized protein LOC100241023 [Vitis vinifera];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=2e-37) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT5G52430.1 (e_value=2e-82) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:21283093-21285045 REVERSE LENGTH=438;; (*ITAG) Solyc08g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61459572-61463990 transcript_region:SL2.40ch08:61459572..61463990- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7MRR7_ARALY)"; NbS00032586g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|232; (*GB) gi|334902911|gb|AEH25587.1| (e_value=1e-24) transposase [Solanum demissum];; (*ITAG) Solyc03g095560.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:50208925-50209659 transcript_region:SL2.40ch03:50208925..50209659+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00032586g0012.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|61|292; (*GB) gi|255555689|ref|XP_002518880.1| (e_value=7e-60) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q43385|DOF37_ARATH (e_value=3e-33) Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2;; (*TAIR) AT3G61850.4 (e_value=2e-36) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=324;; (*ITAG) Solyc08g082910.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62732664-62734361 transcript_region:SL2.40ch08:62732664..62734361+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 ***- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00032586g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|414; (*GB) gi|147225285|dbj|BAF62469.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9FN67|Y5133_ARATH (e_value=1e-168) BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1;; (*TAIR) AT5G41330.1 (e_value=1e-169) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr5:16536452-16537828 REVERSE LENGTH=458;; (*ITAG) Solyc08g081230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61456635-61458026 transcript_region:SL2.40ch08:61456635..61458026- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7MIW8_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00032586g0013.1 protein AED:0.45 eAED:0.66 QI:0|0|0|0.66|0|0.33|3|0|81; (*GB) gi|147225285|dbj|BAF62469.1| (e_value=5e-26) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9FN67|Y5133_ARATH (e_value=3e-15) BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1;; (*TAIR) AT5G41330.1 (e_value=3e-16) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr5:16536452-16537828 REVERSE LENGTH=458;; (*ITAG) Solyc08g081230.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61456635-61458026 transcript_region:SL2.40ch08:61456635..61458026- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7MIW8_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00004847g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|225424108|ref|XP_002283507.1| (e_value=1e-53) PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Vitis vinifera];; (*SWP) sp|Q9ZT50|RHA2A_ARATH (e_value=6e-33) E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1;; (*TAIR) AT1G15100.1 (e_value=5e-34) | Symbols: RHA2A | RING-H2 finger A2A | chr1:5193703-5194170 REVERSE LENGTH=155;; (*ITAG) Solyc04g007500.1.1 (e_value=2e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1170448-1170939 transcript_region:SL2.40ch04:1170448..1170939- go_terms:GO:0005515,GO:0004842 functional_description:"RING finger protein (AHRD V1 ***- Q22V07_TETTH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00024695g0008.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|344; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-71) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g054620.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:52016680-52020322 transcript_region:SL2.40ch04:52016680..52020322+ go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00024695g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|356536435|ref|XP_003536743.1| (e_value=3e-64) PREDICTED: E3 ubiquitin-protein ligase CIP8-like isoform 1 [Glycine max];; (*SWP) sp|Q9SPL2|CIP8_ARATH (e_value=1e-51) E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1;; (*TAIR) AT5G64920.1 (e_value=1e-52) | Symbols: CIP8 | COP1-interacting protein 8 | chr5:25944338-25945342 REVERSE LENGTH=334;; (*ITAG) Solyc09g074460.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61757436-61758569 transcript_region:SL2.40ch09:61757436..61758569+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024695g0009.1 protein AED:0.43 eAED:0.46 QI:0|0.5|0|1|0|0.33|3|0|82; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00000387g0016.1 protein AED:0.08 eAED:0.12 QI:0|0.66|0.25|1|0.66|0.75|4|0|221; (*GB) gi|388503428|gb|AFK39780.1| (e_value=6e-39) unknown [Lotus japonicus];; (*SWP) sp|D2KQI6|CSPL1_BETVM (e_value=3e-39) CASP-like protein Ni6 OS=Beta vulgaris subsp. maritima GN=Ni6 PE=2 SV=1;; (*TAIR) AT4G15610.1 (e_value=2e-37) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:8909162-8910641 FORWARD LENGTH=193;; (*ITAG) Solyc01g067300.2.1 (e_value=6e-77) genomic_reference:SL2.40ch01 gene_region:68108199-68112618 transcript_region:SL2.40ch01:68108199..68112618- functional_description:"UPF0497 membrane protein 13 (AHRD V1 ***- U497D_SOYBN); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00000387g0014.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|0|0|3|0|241; (*GB) gi|225432378|ref|XP_002276628.1| (e_value=2e-116) PREDICTED: uncharacterized protein LOC100244223 [Vitis vinifera];; (*TAIR) AT5G18660.1 (e_value=7e-108) | Symbols: PCB2 | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6220872-6222125 REVERSE LENGTH=417;; (*ITAG) Solyc01g067290.2.1 (e_value=2e-126) genomic_reference:SL2.40ch01 gene_region:68104891-68106498 transcript_region:SL2.40ch01:68104891..68106498+ go_terms:GO:0051744 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C8RY11_9RHOB); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0051744 NbS00000387g0015.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|2|0|152; (*GB) gi|224100353|ref|XP_002311844.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G18660.1 (e_value=2e-24) | Symbols: PCB2 | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6220872-6222125 REVERSE LENGTH=417;; (*ITAG) Solyc01g067290.2.1 (e_value=4e-60) genomic_reference:SL2.40ch01 gene_region:68104891-68106498 transcript_region:SL2.40ch01:68104891..68106498+ go_terms:GO:0051744 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C8RY11_9RHOB); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0051744 NbS00030922g0001.1 protein AED:0.23 eAED:0.23 QI:168|-1|0|1|-1|1|1|0|80; (*GB) gi|26397273|sp|O82067.3|TOM7A_SOLTU (e_value=2e-29) RecName: Full=Mitochondrial import receptor subunit TOM7-1; AltName: Full=Translocase of outer membrane 7 kDa subunit 1;; (*SWP) sp|O82067|TOM7A_SOLTU (e_value=4e-31) Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3;; (*TAIR) AT5G41685.1 (e_value=9e-21) | Symbols: | Mitochondrial outer membrane translocase complex, subunit Tom7 | chr5:16669419-16669646 REVERSE LENGTH=75;; (*ITAG) Solyc07g015970.1.1 (e_value=2e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:6053600-6053818 transcript_region:SL2.40ch07:6053600..6053818+ go_terms:GO:0005741 functional_description:"Mitochondrial import receptor subunit TOM7-1 (AHRD V1 ***- B6SJR3_MAIZE); contains Interpro domain(s) IPR012621 Mitochondrial outer membrane translocase complex, subunitt Tom7 "; GO:0005741 NbS00030922g0009.1 protein AED:0.20 eAED:0.24 QI:453|0.5|0.55|0.88|0.37|0.33|9|432|391; (*GB) gi|225468218|ref|XP_002263085.1| (e_value=5e-91) PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LA53|MBD2_ARATH (e_value=1e-76) Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1;; (*TAIR) AT5G35330.3 (e_value=9e-78) | Symbols: MBD02 | methyl-CPG-binding domain protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272;; (*ITAG) Solyc05g047450.1.1 (e_value=7e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58041156-58047725 transcript_region:SL2.40ch05:58041156..58047725+ go_terms:GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 ***- B9N851_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0051747 NbS00030922g0014.1 protein AED:0.05 eAED:0.05 QI:578|0.84|0.78|1|0.76|0.71|14|556|1120; (*GB) gi|350540000|ref|NP_001234605.1| (e_value=0.0) auxin response factor 19-1 [Solanum lycopersicum];; (*SWP) sp|Q6Z2W3|ARFE_ORYSJ (e_value=0.0) Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2;; (*TAIR) AT1G19220.1 (e_value=0.0) | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086;; (*ITAG) Solyc05g047460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58050744-58056799 transcript_region:SL2.40ch05:58050744..58056799- go_terms:GO:0046983 functional_description:"Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046983 NbS00030922g0010.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|270|331; (*GB) gi|255566953|ref|XP_002524459.1| (e_value=2e-98) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LT81|C3H39_ARATH (e_value=6e-66) Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1;; (*TAIR) AT3G19360.1 (e_value=5e-67) | Symbols: | Zinc finger (CCCH-type) family protein | chr3:6707544-6708864 FORWARD LENGTH=386;; (*ITAG) Solyc11g070070.1.1 (e_value=9e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51701395-51703065 transcript_region:SL2.40ch11:51701395..51703065- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 39 (AHRD V1 ***- C3H39_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00042846g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|0.66|1|1|3|111|122; (*GB) gi|225445152|ref|XP_002284033.1| (e_value=3e-20) PREDICTED: 7SK snRNA methylphosphate capping enzyme [Vitis vinifera];; (*TAIR) AT5G51130.1 (e_value=6e-22) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20781896-20783901 FORWARD LENGTH=318;; (*ITAG) Solyc05g050000.2.1 (e_value=2e-29) genomic_reference:SL2.40ch05 gene_region:58997556-59001737 transcript_region:SL2.40ch05:58997556..59001737- go_terms:GO:0004652 functional_description:"Bicoid-interacting 3 domain-containing protein (Fragment) (AHRD V1 *-*- C6F7A2_PSEMZ); contains Interpro domain(s) IPR010675 Bicoid-interacting 3 "; GO:0004652 NbS00046629g0002.1 protein AED:0.22 eAED:0.22 QI:158|1|1|1|0.5|0.6|5|219|113; (*GB) gi|225438619|ref|XP_002281037.1| (e_value=5e-73) PREDICTED: 60S ribosomal protein L30 [Vitis vinifera];; (*SWP) sp|O49884|RL30_LUPLU (e_value=3e-70) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=3e-69) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc04g072660.2.1 (e_value=1e-75) genomic_reference:SL2.40ch04 gene_region:57219626-57221412 transcript_region:SL2.40ch04:57219626..57221412- go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00044592g0018.1 protein AED:0.01 eAED:0.01 QI:75|1|1|1|1|1|2|83|167; (*GB) gi|224125816|ref|XP_002319682.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G54400.1 (e_value=1e-21) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20307667-20308768 FORWARD LENGTH=183;; (*ITAG) Solyc10g076880.1.1 (e_value=3e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59187079-59187814 transcript_region:SL2.40ch10:59187079..59187814+ functional_description:"Hsp20/alpha crystallin family protein expressed (AHRD V1 **-- Q10FT7_ORYSJ); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00044592g0020.1 protein AED:0.07 eAED:0.07 QI:334|1|1|1|0.85|0.75|8|83|566; (*GB) gi|374250715|gb|AEY99980.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9ZV15|CDPKK_ARATH (e_value=0.0) Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=2 SV=1;; (*TAIR) AT2G38910.1 (e_value=0.0) | Symbols: CPK20 | calcium-dependent protein kinase 20 | chr2:16245214-16247483 REVERSE LENGTH=583;; (*ITAG) Solyc10g076900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59195105-59198922 transcript_region:SL2.40ch10:59195105..59198922+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium dependent protein kinase 2 (AHRD V1 ***- B9H9N5_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00044592g0017.1 protein AED:0.22 eAED:0.22 QI:367|0.90|0.83|1|0.81|0.83|12|0|795; (*GB) gi|8439545|gb|AAF74983.1|AF082893_1 (e_value=0.0) methionine synthase [Solanum tuberosum];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00044592g0019.1 protein AED:0.36 eAED:0.41 QI:89|0.62|0.55|1|0.75|0.66|9|0|280; (*GB) gi|388498106|gb|AFK37119.1| (e_value=7e-119) unknown [Lotus japonicus];; (*TAIR) AT5G32450.1 (e_value=5e-116) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:12079707-12081317 FORWARD LENGTH=267;; (*ITAG) Solyc10g076890.1.1 (e_value=5e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59189548-59194122 transcript_region:SL2.40ch10:59189548..59194122+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7MHK9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00044592g0021.1 protein AED:0.25 eAED:0.25 QI:177|0.63|0.58|0.83|0.81|0.83|12|0|889; (*GB) gi|225439260|ref|XP_002263631.1| (e_value=1e-139) PREDICTED: uncharacterized protein LOC100254786 [Vitis vinifera];; (*SWP) sp|O60506|HNRPQ_HUMAN (e_value=3e-25) Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2;; (*TAIR) AT2G44710.1 (e_value=8e-51) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc10g076870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59174862-59184607 transcript_region:SL2.40ch10:59174862..59184607- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein, cytoplasmic and nuclear (AHRD V1 *--- PABP_COCIM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00059637g0004.1 protein AED:0.06 eAED:0.06 QI:66|1|0|1|1|1|4|0|179; (*GB) gi|359477093|ref|XP_003631936.1| (e_value=7e-84) PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=2e-70) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.3 (e_value=1e-71) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029;; (*ITAG) Solyc01g057900.2.1 (e_value=7e-109) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00055899g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.71|1|0.66|0.71|7|0|706; (*GB) gi|302141866|emb|CBI19069.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54UL8|MPS1_DICDI (e_value=7e-71) Probable serine/threonine-protein kinase mps1 OS=Dictyostelium discoideum GN=mps1 PE=3 SV=1;; (*TAIR) AT1G77720.1 (e_value=0.0) | Symbols: PPK1 | putative protein kinase 1 | chr1:29210730-29213877 FORWARD LENGTH=777;; (*ITAG) Solyc11g013240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6138240-6153169 transcript_region:SL2.40ch11:6138240..6153169- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_PONAB); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00060376g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|250; (*GB) gi|225464826|ref|XP_002272164.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100258714 [Vitis vinifera];; (*TAIR) AT2G27260.1 (e_value=5e-36) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11669769-11670500 FORWARD LENGTH=243;; (*ITAG) Solyc06g074050.1.1 (e_value=7e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42167694-42168437 transcript_region:SL2.40ch06:42167694..42168437- functional_description:"Harpin-induced 1 (AHRD V1 **-- Q2HSJ9_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00023021g0011.1 protein AED:0.06 eAED:0.07 QI:0|1|0.33|1|0|0|3|6|124; (*GB) gi|217071022|gb|ACJ83871.1| (e_value=2e-34) unknown [Medicago truncatula];; (*SWP) sp|Q15MS4|RL34_PSEA6 (e_value=3e-14) 50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=rpmH PE=3 SV=1;; (*TAIR) AT3G13882.1 (e_value=7e-37) | Symbols: | Ribosomal protein L34 | chr3:4574600-4575852 FORWARD LENGTH=147;; (*ITAG) Solyc06g062760.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:35979478-35983109 transcript_region:SL2.40ch06:35979478..35983109+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L34 (AHRD V1 ***- Q84R26_ARATH); contains Interpro domain(s) IPR000271 Ribosomal protein L34 "; GO:0005840 NbS00023021g0001.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|224069553|ref|XP_002302997.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72690.1 (e_value=1e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27361223-27361745 FORWARD LENGTH=87;; (*ITAG) Solyc06g062770.2.1 (e_value=9e-37) genomic_reference:SL2.40ch06 gene_region:35983779-35985343 transcript_region:SL2.40ch06:35983779..35985343+ functional_description:"At1g17490/F1L3_4 (AHRD V1 ***- Q9LNQ6_ARATH)"; NbS00023021g0003.1 protein AED:0.21 eAED:0.21 QI:639|0.83|0.85|1|0.83|0.71|7|246|405; (*GB) gi|224135041|ref|XP_002327552.1| (e_value=3e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=6e-32) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT1G17640.1 (e_value=2e-47) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:6067394-6069098 REVERSE LENGTH=369;; (*ITAG) Solyc03g121710.2.1 (e_value=1e-68) genomic_reference:SL2.40ch03 gene_region:63844015-63848152 transcript_region:SL2.40ch03:63844015..63848152+ go_terms:GO:0043047 functional_description:"RNA-binding motif, single-stranded-interacting protein 1 (AHRD V1 *--* RBMS1_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0043047 NbS00023021g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.54|1|0.6|0.81|11|366|357; (*GB) gi|225442198|ref|XP_002276942.1| (e_value=1e-96) PREDICTED: 5'-nucleotidase surE [Vitis vinifera];; (*TAIR) AT1G72880.1 (e_value=5e-84) | Symbols: | Survival protein SurE-like phosphatase/nucleotidase | chr1:27423678-27425928 REVERSE LENGTH=385;; (*ITAG) Solyc06g062750.2.1 (e_value=5e-123) genomic_reference:SL2.40ch06 gene_region:35975015-35978442 transcript_region:SL2.40ch06:35975015..35978442+ go_terms:GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 *-*- C7LSK7_DESBD); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0003993 NbS00001956g0007.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|0.5|2|290|127; (*GB) gi|359474777|ref|XP_002267000.2| (e_value=3e-19) PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis vinifera];; (*SWP) sp|Q9FT73|RQL2_ARATH (e_value=6e-16) ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 PE=1 SV=1;; (*TAIR) AT1G31360.1 (e_value=5e-17) | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705;; (*ITAG) Solyc08g074600.2.1 (e_value=2e-40) genomic_reference:SL2.40ch08 gene_region:55860216-55864872 transcript_region:SL2.40ch08:55860216..55864872- go_terms:GO:0005622 functional_description:"ATP-dependent DNA helicase RecQ family protein expressed (AHRD V1 ***- Q2QZ07_ORYSJ); contains Interpro domain(s) IPR002121 Helicase and RNase D C-terminal, HRDC "; GO:0005622 NbS00001956g0008.1 protein AED:0.70 eAED:0.70 QI:0|0.5|0.33|0.66|1|1|3|0|90; (*GB) gi|224074554|ref|XP_002304389.1| (e_value=5e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FT73|RQL2_ARATH (e_value=2e-25) ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 PE=1 SV=1;; (*TAIR) AT1G31360.2 (e_value=1e-26) | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:11233174-11237412 FORWARD LENGTH=580;; (*ITAG) Solyc08g074610.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55867799-55896405 transcript_region:SL2.40ch08:55867799..55896405- go_terms:GO:0017116 functional_description:"ATP-dependent DNA helicase Q1 (AHRD V1 **** B0XD44_CULQU); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0017116 NbS00001956g0111.1 protein AED:0.01 eAED:0.01 QI:101|1|0.5|1|1|0.5|2|74|39 NbS00001956g0112.1 protein AED:0.12 eAED:0.17 QI:0|1|0.71|1|1|1|7|0|386 NbS00001956g0113.1 protein AED:0.34 eAED:0.40 QI:0|0|0|0.66|0.5|0.33|3|0|163 NbS00037812g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0.5|1|0.6|0.5|6|0|382; (*GB) gi|350536431|ref|NP_001234758.1| (e_value=4e-143) CycD3;3 protein [Solanum lycopersicum];; (*SWP) sp|P42753|CCD31_ARATH (e_value=1e-78) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=9e-80) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc04g078470.2.1 (e_value=9e-146) genomic_reference:SL2.40ch04 gene_region:60795941-60797791 transcript_region:SL2.40ch04:60795941..60797791- go_terms:GO:0004723 functional_description:"Cyclin D3-1 (AHRD V1 ***- Q2ABE7_CAMSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004723 NbS00004628g0007.1 protein AED:0.21 eAED:0.21 QI:260|0.83|0.69|1|0.66|0.69|13|0|864; (*GB) gi|357472861|ref|XP_003606715.1| (e_value=4e-78) Serine/arginine repetitive matrix protein [Medicago truncatula];; (*SWP) sp|Q5ZMJ9|SRRM1_CHICK (e_value=1e-39) Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1;; (*TAIR) AT2G29210.1 (e_value=2e-72) | Symbols: | splicing factor PWI domain-containing protein | chr2:12558156-12562168 FORWARD LENGTH=878;; (*ITAG) Solyc09g030390.2.1 (e_value=5e-154) genomic_reference:SL2.40ch09 gene_region:19822908-19829486 transcript_region:SL2.40ch09:19822908..19829486+ go_terms:GO:0006397 functional_description:"Serine/arginine repetitive matrix 1 (Fragment) (AHRD V1 *--- Q28CC2_XENTR); contains Interpro domain(s) IPR002483 Splicing factor PWI "; GO:0006397 NbS00005443g0015.1 protein AED:0.09 eAED:0.09 QI:82|1|1|1|0.85|0.75|8|419|374; (*GB) gi|297746468|emb|CBI16524.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O05235|YUGF_BACSU (e_value=4e-17) Uncharacterized hydrolase yugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1;; (*TAIR) AT5G19850.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6709976-6711662 REVERSE LENGTH=359;; (*ITAG) Solyc12g098660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64432479-64436940 transcript_region:SL2.40ch12:64432479..64436940+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LZC3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00005443g0014.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|0.66|0.75|4|0|177; (*GB) gi|115111006|gb|ABI84105.1| (e_value=4e-73) Rho guanine dissociation inhibitor [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=9e-32) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=7e-33) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc12g098650.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64428665-64430768 transcript_region:SL2.40ch12:64428665..64430768+ go_terms:GO:0005737 functional_description:"Rho GDP-dissociation inhibitor 1 (AHRD V1 ***- B6UCD5_MAIZE); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005737 NbS00005443g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|1|1|3|0|245; (*GB) gi|334902911|gb|AEH25587.1| (e_value=2e-23) transposase [Solanum demissum];; (*ITAG) Solyc10g077140.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59333609-59337155 transcript_region:SL2.40ch10:59333609..59337155+ go_terms:GO:0008270 functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00005443g0017.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|131 NbS00016212g0009.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0.33|0.25|4|0|493; (*GB) gi|7673355|gb|AAF66823.1|AF190655_1 (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=0.0) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc01g107870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87021438-87028206 transcript_region:SL2.40ch01:87021438..87028206+ go_terms:GO:0008143 functional_description:"Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143 NbS00016212g0010.1 protein AED:0.64 eAED:0.80 QI:0|0|0|0.66|1|1|3|0|61 NbS00016212g0112.1 protein AED:0.27 eAED:0.51 QI:0|0|0|0.66|0|0|3|0|91 NbS00013449g0012.1 protein AED:0.24 eAED:0.33 QI:84|1|0.71|1|0.83|0.71|7|0|198; (*GB) gi|225460123|ref|XP_002275735.1| (e_value=2e-83) PREDICTED: tubulin-specific chaperone E [Vitis vinifera];; (*SWP) sp|Q5QJ74|TBCEL_HUMAN (e_value=3e-17) Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens GN=TBCEL PE=2 SV=2;; (*TAIR) AT1G71440.1 (e_value=2e-63) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042470.1.1 (e_value=9e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32151789-32164530 transcript_region:SL2.40ch11:32151789..32164530+ functional_description:"Tubulin-specific chaperone E (AHRD V1 ***- C0S593_PARBP); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; NbS00013449g0013.1 protein AED:0.31 eAED:0.51 QI:73|0.66|0.5|0.75|1|0.75|4|0|88; (*GB) gi|225460123|ref|XP_002275735.1| (e_value=7e-42) PREDICTED: tubulin-specific chaperone E [Vitis vinifera];; (*TAIR) AT1G71440.1 (e_value=8e-37) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042500.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:32178558-32181623 transcript_region:SL2.40ch11:32178558..32181623+ functional_description:"Tubulin folding cofactor (AHRD V1 ***- B9IQ98_POPTR)"; NbS00013449g0008.1 protein AED:0.26 eAED:0.28 QI:151|0.66|0.5|1|0.88|0.9|10|0|874; (*GB) gi|357481253|ref|XP_003610912.1| (e_value=1e-161) Far upstream element-binding protein [Medicago truncatula];; (*SWP) sp|Q96I24|FUBP3_HUMAN (e_value=3e-21) Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2;; (*TAIR) AT4G10070.1 (e_value=2e-69) | Symbols: | KH domain-containing protein | chr4:6295608-6299759 REVERSE LENGTH=725;; (*ITAG) Solyc11g040370.1.1 (e_value=1e-180) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:30623538-30629206 transcript_region:SL2.40ch11:30623538..30629206- go_terms:GO:0003723 functional_description:"Far upstream element-binding protein 3 (AHRD V1 *-*- B5X224_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00013449g0101.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|105 NbS00018557g0010.1 protein AED:0.05 eAED:0.05 QI:209|1|1|1|0.5|0.33|3|254|140; (*GB) gi|147801241|emb|CAN72326.1| (e_value=1e-62) hypothetical protein VITISV_041246 [Vitis vinifera];; (*TAIR) AT2G06010.1 (e_value=5e-65) | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336841-2338391 FORWARD LENGTH=188;; (*ITAG) Solyc12g009080.1.1 (e_value=2e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2409947-2411521 transcript_region:SL2.40ch12:2409947..2411521+ functional_description:"OBP3-responsive gene 4 (AHRD V1 **-- D7L9C5_ARALY)"; NbS00018557g0009.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.78|0.73|15|308|742; (*GB) gi|225444686|ref|XP_002277641.1| (e_value=0.0) PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera];; (*SWP) sp|Q5TIE3|VW5B1_HUMAN (e_value=3e-19) von Willebrand factor A domain-containing protein 5B1 OS=Homo sapiens GN=VWA5B1 PE=1 SV=2;; (*TAIR) AT1G19110.1 (e_value=0.0) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc12g009160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2466301-2472612 transcript_region:SL2.40ch12:2466301..2472612+ functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 *-*- B5JSY7_9GAMM); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00018557g0001.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.25|1|1|1|4|0|240; (*GB) gi|224069122|ref|XP_002326280.1| (e_value=4e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28230.1 (e_value=3e-50) | Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219;; (*ITAG) Solyc10g049510.1.1 (e_value=1e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41531214-41532588 transcript_region:SL2.40ch10:41531214..41532588- go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013921 Mediator complex, subunit Med20 "; GO:0016592 NbS00002190g0105.1 protein AED:0.00 eAED:0.00 QI:201|1|1|1|1|1|2|437|68 NbS00002190g0101.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|78 NbS00002190g0201.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|74 NbS00002190g0214.1 protein AED:0.03 eAED:0.03 QI:364|1|1|1|0.4|0.5|6|270|366 NbS00002190g0213.1 protein AED:0.16 eAED:0.16 QI:0|0.91|0.84|1|1|1|13|0|501 NbS00011442g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.2|0.16|1|0.8|0.5|6|225|843; (*GB) gi|359484751|ref|XP_002264530.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=2e-149) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G51350.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:20867860-20870621 REVERSE LENGTH=895;; (*ITAG) Solyc07g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:41653-45693 transcript_region:SL2.40ch07:41653..45693+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00011442g0013.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|62; (*GB) gi|359488225|ref|XP_002263589.2| (e_value=4e-14) PREDICTED: nudix hydrolase 18, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LE73|NUDT4_ARATH (e_value=7e-14) Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1;; (*TAIR) AT1G18300.1 (e_value=6e-15) | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog 4 | chr1:6299841-6300799 FORWARD LENGTH=207;; (*ITAG) Solyc03g118470.2.1 (e_value=1e-36) genomic_reference:SL2.40ch03 gene_region:61383765-61385574 transcript_region:SL2.40ch03:61383765..61385574+ go_terms:GO:0008486 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase 1 (AHRD V1 *-** C1BIE3_ONCMY); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00011442g0012.1 protein AED:0.21 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|91; (*GB) gi|255580280|ref|XP_002530969.1| (e_value=2e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G39430.1 (e_value=6e-14) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=7e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00003211g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|171; (*GB) gi|224120914|ref|XP_002330857.1| (e_value=3e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28270.1 (e_value=2e-47) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:12053652-12054398 FORWARD LENGTH=248;; (*ITAG) Solyc01g073880.2.1 (e_value=7e-91) genomic_reference:SL2.40ch01 gene_region:70459952-70460560 transcript_region:SL2.40ch01:70459952..70460560- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9LRV1_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00015259g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|436; (*GB) gi|356567000|ref|XP_003551712.1| (e_value=3e-161) PREDICTED: phospholipase A(1) DAD1, chloroplastic-like [Glycine max];; (*SWP) sp|Q948R1|PLA11_ARATH (e_value=5e-155) Phospholipase A(1) DAD1, chloroplastic OS=Arabidopsis thaliana GN=DAD1 PE=1 SV=1;; (*TAIR) AT2G44810.1 (e_value=9e-155) | Symbols: DAD1 | alpha/beta-Hydrolases superfamily protein | chr2:18479095-18480168 FORWARD LENGTH=357;; (*ITAG) Solyc05g053920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63091393-63092700 transcript_region:SL2.40ch05:63091393..63092700+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00015259g0006.1 protein AED:0.11 eAED:0.23 QI:0|0|0|1|0|0|2|0|65; (*ITAG) Solyc01g065800.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798531-64799273 transcript_region:SL2.40ch01:64798531..64799273+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009191g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|282; (*GB) gi|225469636|ref|XP_002265147.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100252669 [Vitis vinifera];; (*TAIR) AT1G12020.1 (e_value=5e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:4062625-4063305 REVERSE LENGTH=226;; (*ITAG) Solyc11g012060.1.1 (e_value=5e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5004069-5004926 transcript_region:SL2.40ch11:5004069..5004926- functional_description:"Unknown Protein (AHRD V1)"; NbS00009191g0008.1 protein AED:0.01 eAED:0.01 QI:947|0.5|0.66|1|0|0.33|3|157|371; (*GB) gi|255554735|ref|XP_002518405.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=0.0) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=0.0) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc11g012050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4992438-4996469 transcript_region:SL2.40ch11:4992438..4996469+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q2HTT4_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000440g0015.1 protein AED:0.26 eAED:0.29 QI:0|0|0|0.8|0.5|0.6|5|0|602; (*GB) gi|296086315|emb|CBI31756.3| (e_value=1e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5RCE6|RL1D1_PONAB (e_value=3e-31) Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2;; (*TAIR) AT3G58660.1 (e_value=9e-105) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=6e-167) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00000440g0013.1 protein AED:0.37 eAED:0.38 QI:0|0.2|0|1|0.4|0.16|6|0|467; (*GB) gi|255541336|ref|XP_002511732.1| (e_value=3e-167) cytohesin 1, 2, 3, putative [Ricinus communis];; (*SWP) sp|Q9P7V5|SEC7B_SCHPO (e_value=4e-47) Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec72 PE=1 SV=1;; (*TAIR) AT1G01960.1 (e_value=3e-144) | Symbols: EDA10 | SEC7-like guanine nucleotide exchange family protein | chr1:330830-337582 REVERSE LENGTH=1750;; (*ITAG) Solyc01g091460.2.1 (e_value=3e-173) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00000440g0010.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.6|1|1|5|0|353; (*GB) gi|225453927|ref|XP_002279696.1| (e_value=6e-95) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Vitis vinifera];; (*TAIR) AT3G60860.1 (e_value=9e-83) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793;; (*ITAG) Solyc01g091460.2.1 (e_value=8e-121) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00000440g0113.1 protein AED:0.06 eAED:0.06 QI:241|1|1|1|1|1|5|531|235 NbS00000440g0111.1 protein AED:0.20 eAED:0.20 QI:0|0.94|0.94|1|0.88|0.83|18|292|846 NbS00000440g0112.1 protein AED:0.22 eAED:0.22 QI:440|0.71|0.87|1|0.71|0.87|8|484|432 NbS00000440g0114.1 protein AED:0.25 eAED:0.25 QI:91|0.83|0.84|1|1|1|13|249|502 NbS00000440g0120.1 protein AED:0.30 eAED:0.30 QI:252|1|0.83|1|0.8|0.66|6|275|291 NbS00010494g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.89|1|0.94|0.94|19|323|798; (*GB) gi|224087947|ref|XP_002308268.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00010494g0008.1 protein AED:0.00 eAED:0.00 QI:288|1|1|1|1|1|3|367|318; (*GB) gi|255546095|ref|XP_002514107.1| (e_value=1e-44) hypothetical protein RCOM_1046780 [Ricinus communis];; (*SWP) sp|Q9SZI6|GAT22_ARATH (e_value=3e-19) Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1;; (*TAIR) AT4G26150.1 (e_value=3e-20) | Symbols: CGA1, GATA22, GNL | cytokinin-responsive gata factor 1 | chr4:13253210-13254659 FORWARD LENGTH=352;; (*ITAG) Solyc07g038160.2.1 (e_value=2e-76) genomic_reference:SL2.40ch07 gene_region:42820920-42822735 transcript_region:SL2.40ch07:42820920..42822735+ go_terms:GO:0006355 functional_description:"GATA transcription factor 20 (AHRD V1 *-*- B6SS40_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00010494g0207.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0|0|3|191|85 NbS00010494g0208.1 protein AED:0.11 eAED:0.12 QI:25|0.25|0|1|0.5|0.6|5|0|528 NbS00044873g0001.1 protein AED:0.11 eAED:0.44 QI:0|0|0.5|1|1|1|2|0|119; (*ITAG) Solyc00g019970.2.1 (e_value=3e-68) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046007g0003.1 protein AED:0.14 eAED:0.14 QI:224|1|1|1|1|1|3|153|414; (*GB) gi|20563|emb|CAA78386.1| (e_value=0.0) protein 1 [Petunia x hybrida];; (*SWP) sp|Q9FLR1|MYB29_ARATH (e_value=6e-67) Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1;; (*TAIR) AT5G15310.1 (e_value=7e-110) | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein 16 | chr5:4974894-4976106 FORWARD LENGTH=326;; (*ITAG) Solyc02g088190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44930481-44932830 transcript_region:SL2.40ch02:44930481..44932830+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00015126g0006.1 protein AED:0.29 eAED:0.29 QI:162|1|1|1|0.77|0.9|10|279|354; (*GB) gi|359494710|ref|XP_002268872.2| (e_value=6e-95) PREDICTED: GATA transcription factor 28-like [Vitis vinifera];; (*SWP) sp|Q8H1G0|GAT28_ARATH (e_value=2e-44) GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1;; (*TAIR) AT1G51600.2 (e_value=1e-45) | Symbols: ZML2, TIFY2A, GATA28 | ZIM-LIKE 2 | chr1:19133176-19135252 FORWARD LENGTH=302;; (*ITAG) Solyc01g106040.2.1 (e_value=5e-159) genomic_reference:SL2.40ch01 gene_region:85776930-85781923 transcript_region:SL2.40ch01:85776930..85781923+ go_terms:GO:0008431 functional_description:"GATA transcription factor 25 (AHRD V1 *--- B6TFI9_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0008431 NbS00043039g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|224127983|ref|XP_002320212.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPX9|KIC_ARATH (e_value=4e-56) Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2;; (*TAIR) AT2G46600.1 (e_value=3e-57) | Symbols: | Calcium-binding EF-hand family protein | chr2:19136070-19136477 FORWARD LENGTH=135;; (*ITAG) Solyc10g009340.1.1 (e_value=1e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3410164-3410535 transcript_region:SL2.40ch10:3410164..3410535- go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 ***- Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00043039g0005.1 protein AED:0.23 eAED:0.23 QI:404|1|1|1|1|1|5|177|240; (*GB) gi|255564609|ref|XP_002523299.1| (e_value=9e-108) arginine/serine-rich splicing factor, putative [Ricinus communis];; (*SWP) sp|P92964|RSP31_ARATH (e_value=4e-93) Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2;; (*TAIR) AT3G61860.1 (e_value=3e-94) | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:22900311-22902159 REVERSE LENGTH=264;; (*ITAG) Solyc01g096180.2.1 (e_value=6e-106) genomic_reference:SL2.40ch01 gene_region:79034638-79037851 transcript_region:SL2.40ch01:79034638..79037851- go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 **-- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00000408g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|192; (*GB) gi|13603406|dbj|BAB40973.1| (e_value=1e-138) isopentenyl diphosphate isomerase 1 [Nicotiana tabacum];; (*SWP) sp|O48964|IDI1_CAMAC (e_value=8e-129) Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1;; (*TAIR) AT3G02780.1 (e_value=2e-124) | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | chr3:602578-604648 REVERSE LENGTH=284;; (*ITAG) Solyc04g056390.2.1 (e_value=7e-138) genomic_reference:SL2.40ch04 gene_region:53311908-53315677 transcript_region:SL2.40ch04:53311908..53315677- go_terms:GO:0004452,GO:0042802 functional_description:"Isopentenyl-diphosphate delta-isomerase (AHRD V1 **** Q84RZ8_9GENT); contains Interpro domain(s) IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 "; GO:0004452,GO:0042802 NbS00000408g0003.1 protein AED:0.02 eAED:0.13 QI:67|0|0|1|1|0.5|2|0|183; (*GB) gi|297735275|emb|CBI17637.3| (e_value=1e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16460.1 (e_value=3e-38) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr5:5377085-5378533 REVERSE LENGTH=368;; (*ITAG) Solyc04g056380.2.1 (e_value=7e-89) genomic_reference:SL2.40ch04 gene_region:53308208-53312047 transcript_region:SL2.40ch04:53308208..53312047+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 **-- Q9FFD9_ARATH); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00017317g0004.1 protein AED:0.49 eAED:0.51 QI:0|0.75|0.44|0.77|1|1|9|0|371; (*GB) gi|118488318|gb|ABK95978.1| (e_value=9e-91) unknown [Populus trichocarpa];; (*TAIR) AT5G50310.1 (e_value=1e-83) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:20474562-20479281 FORWARD LENGTH=666;; (*ITAG) Solyc03g111390.2.1 (e_value=5e-118) genomic_reference:SL2.40ch03 gene_region:56029307-56039278 transcript_region:SL2.40ch03:56029307..56039278+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 4 (AHRD V1 ***- B2VXE7_PYRTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00048655g0002.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|225454338|ref|XP_002275802.1| (e_value=1e-177) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=2e-109) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=3e-102) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc11g010760.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00048655g0015.1 protein AED:0.12 eAED:0.12 QI:306|1|1|1|0.83|0.71|7|445|373; (*GB) gi|315258227|gb|ADT91692.1| (e_value=0.0) mitogen-activated protein kinase 4 [Nicotiana attenuata];; (*SWP) sp|Q39024|MPK4_ARATH (e_value=0.0) Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2;; (*TAIR) AT4G01370.1 (e_value=0.0) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc01g094960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78118441-78124258 transcript_region:SL2.40ch01:78118441..78124258+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0016908 NbS00048655g0013.1 protein AED:0.19 eAED:0.19 QI:360|1|0.87|1|1|1|8|0|501; (*GB) gi|255541684|ref|XP_002511906.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT1G01540.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:195980-198383 FORWARD LENGTH=472;; (*ITAG) Solyc01g094940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78103755-78107420 transcript_region:SL2.40ch01:78103755..78107420+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00048655g0004.1 protein AED:0.19 eAED:0.19 QI:78|1|0.5|1|0|0.5|2|0|352; (*GB) gi|160346973|gb|ABX26124.1| (e_value=0.0) bypass1 [Nicotiana benthamiana];; (*SWP) sp|Q9LMM6|BPS1_ARATH (e_value=3e-125) Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1;; (*TAIR) AT2G46080.1 (e_value=8e-138) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347;; (*ITAG) Solyc01g094950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78113463-78115886 transcript_region:SL2.40ch01:78113463..78115886+ functional_description:"Protein BPS1, chloroplastic (AHRD V1 **-- BPS1_ARATH)"; NbS00048655g0016.1 protein AED:0.07 eAED:0.07 QI:0|1|0.6|1|1|1|5|0|475; (*GB) gi|359489656|ref|XP_003633958.1| (e_value=0.0) PREDICTED: probable polygalacturonase-like [Vitis vinifera];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=0.0) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00001612g0014.1 protein AED:0.22 eAED:0.22 QI:83|1|1|1|0.75|1|5|101|370; (*GB) gi|255558669|ref|XP_002520359.1| (e_value=0.0) porphobilinogen deaminase, putative [Ricinus communis];; (*SWP) sp|Q43082|HEM3_PEA (e_value=0.0) Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1;; (*TAIR) AT5G08280.1 (e_value=0.0) | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382;; (*ITAG) Solyc07g066470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65112777-65116118 transcript_region:SL2.40ch07:65112777..65116118- go_terms:GO:0004418 functional_description:"Porphobilinogen deaminase (AHRD V1 ***- B6TVP0_MAIZE); contains Interpro domain(s) IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase "; GO:0004418 NbS00001612g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|15230601|ref|NP_187889.1| (e_value=7e-38) SAUR-like auxin-responsive protein [Arabidopsis thaliana];; (*TAIR) AT3G12830.1 (e_value=2e-40) | Symbols: | SAUR-like auxin-responsive protein family | chr3:4079117-4079515 REVERSE LENGTH=132;; (*ITAG) Solyc07g066560.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:65176999-65177379 transcript_region:SL2.40ch07:65176999..65177379+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00036899g0002.1 protein AED:0.38 eAED:0.84 QI:0|0|0|1|1|1|5|0|246 NbS00036899g0005.1 protein AED:0.00 eAED:0.00 QI:100|1|1|1|0.5|0.66|3|136|137; (*GB) gi|224119594|ref|XP_002318112.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24810.1 (e_value=6e-26) | Symbols: | Protein kinase superfamily protein | chr4:12786791-12789352 REVERSE LENGTH=438;; (*ITAG) Solyc03g110940.2.1 (e_value=7e-32) genomic_reference:SL2.40ch03 gene_region:55715212-55723689 transcript_region:SL2.40ch03:55715212..55723689+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-- ADCK1_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00036899g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|70|79 NbS00031967g0008.1 protein AED:0.22 eAED:0.22 QI:52|0.62|0.66|1|1|1|9|35|297; (*GB) gi|121373|sp|P12424.1|GLNA_NICPL (e_value=0.0) RecName: Full=Glutamine synthetase; AltName: Full=Glutamate--ammonia ligase;; (*SWP) sp|P12424|GLNA_NICPL (e_value=0.0) Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT5G37600.1 (e_value=0.0) | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356;; (*ITAG) Solyc05g051250.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60677819-60681135 transcript_region:SL2.40ch05:60677819..60681135- go_terms:GO:0004356 functional_description:"Glutamine synthetase (AHRD V1 ***- A9PB10_POPTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0004356 NbS00031967g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|224065128|ref|XP_002301682.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=8e-41) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT1G66180.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24647221-24648513 FORWARD LENGTH=430;; (*ITAG) Solyc05g051240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60666717-60668060 transcript_region:SL2.40ch05:60666717..60668060+ go_terms:GO:0008233 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0008233 NbS00025922g0005.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|242; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-40) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025922g0006.1 protein AED:0.60 eAED:0.62 QI:0|0|0|0.75|0|0.25|4|0|176 NbS00025785g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|255564212|ref|XP_002523103.1| (e_value=4e-59) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=1e-12) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT1G02816.1 (e_value=5e-55) | Symbols: | Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166;; (*ITAG) Solyc09g075230.1.1 (e_value=4e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62492731-62493246 transcript_region:SL2.40ch09:62492731..62493246- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00025785g0004.1 protein AED:0.00 eAED:0.00 QI:343|1|1|1|1|1|2|435|86 NbS00024075g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|0.85|1|8|0|353; (*GB) gi|225442369|ref|XP_002276511.1| (e_value=0.0) PREDICTED: uncharacterized RNA methyltransferase CT0009 [Vitis vinifera];; (*SWP) sp|Q8KGF9|Y009_CHLTE (e_value=8e-69) Uncharacterized RNA methyltransferase CT0009 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT0009 PE=3 SV=1;; (*TAIR) AT3G21300.1 (e_value=0.0) | Symbols: | RNA methyltransferase family protein | chr3:7493654-7496257 REVERSE LENGTH=554;; (*ITAG) Solyc03g121260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63474444-63480723 transcript_region:SL2.40ch03:63474444..63480723- go_terms:GO:0008649,GO:0008175 functional_description:"23S rRNA (Uracil-5-)-methyltransferase RumA (AHRD V1 **** D8F5E6_9DELT); contains Interpro domain(s) IPR001566 23S rRNA methyltransferase/RumA "; GO:0008649,GO:0008175 NbS00029566g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|224159215|ref|XP_002338055.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|P0CC24|NU2C2_AGRST (e_value=1e-64) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Agrostis stolonifera GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=8e-61) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=1e-65) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00006980g0121.1 protein AED:0.01 eAED:0.01 QI:46|0.66|0.5|1|0.33|0.5|4|0|236 NbS00006980g0105.1 protein AED:0.25 eAED:0.25 QI:240|0|0.5|1|0|0.5|2|0|300 NbS00006980g0111.1 protein AED:0.54 eAED:0.57 QI:0|0.4|0.16|0.66|1|1|6|0|134 NbS00006980g0123.1 protein AED:0.53 eAED:0.62 QI:0|0|0|0.5|0|0.5|4|0|136 NbS00006980g0108.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|77 NbS00006980g0103.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.33|1|1|3|0|226 NbS00006980g0126.1 protein AED:0.70 eAED:0.75 QI:0|0|0|0.66|0|0|3|0|83 NbS00020888g0001.1 protein AED:0.13 eAED:0.14 QI:0|0.8|0.5|1|1|1|6|0|813; (*GB) gi|357444799|ref|XP_003592677.1| (e_value=0.0) mscS family protein, putative [Medicago truncatula];; (*SWP) sp|Q9LH74|MSL5_ARATH (e_value=0.0) Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1;; (*TAIR) AT3G14810.2 (e_value=0.0) | Symbols: MSL5 | mechanosensitive channel of small conductance-like 5 | chr3:4971223-4974216 REVERSE LENGTH=846;; (*ITAG) Solyc04g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63439571-63444065 transcript_region:SL2.40ch04:63439571..63444065+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 *-*- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00056523g0003.1 protein AED:0.02 eAED:0.02 QI:1213|1|1|1|0.5|0.33|3|330|309; (*GB) gi|255552143|ref|XP_002517116.1| (e_value=2e-96) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G22550.1 (e_value=4e-53) | Symbols: | Protein of unknown function (DUF581) | chr3:7991827-7992805 REVERSE LENGTH=267;; (*ITAG) Solyc09g082210.2.1 (e_value=2e-150) genomic_reference:SL2.40ch09 gene_region:63417320-63419869 transcript_region:SL2.40ch09:63417320..63419869- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00056523g0004.1 protein AED:0.20 eAED:0.68 QI:0|0|0|1|0|0|4|0|228; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-12) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g049600.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46709449-46711179 transcript_region:SL2.40ch12:46709449..46711179- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00038702g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|147852113|emb|CAN82266.1| (e_value=4e-44) hypothetical protein VITISV_009284 [Vitis vinifera];; (*ITAG) Solyc08g080530.1.1 (e_value=7e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60981435-60981983 transcript_region:SL2.40ch08:60981435..60981983- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00006815g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.87|0.66|1|1|0.88|9|0|487; (*GB) gi|587566|emb|CAA56521.1| (e_value=0.0) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|Q42290|MPPB_ARATH (e_value=0.0) Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2;; (*TAIR) AT3G02090.1 (e_value=0.0) | Symbols: MPPBETA | Insulinase (Peptidase family M16) protein | chr3:365624-368526 FORWARD LENGTH=531;; (*ITAG) Solyc05g012480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5715224-5720976 transcript_region:SL2.40ch05:5715224..5720976- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase beta subunit (AHRD V1 ***- Q9AXQ2_CUCME); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00006815g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.55|0.88|0.75|0.66|9|0|389; (*GB) gi|357475017|ref|XP_003607794.1| (e_value=0.0) Beta-glucosidase [Medicago truncatula];; (*SWP) sp|Q9FZE0|BGL40_ARATH (e_value=0.0) Beta-glucosidase 40 OS=Arabidopsis thaliana GN=BGLU40 PE=2 SV=1;; (*TAIR) AT1G26560.1 (e_value=0.0) | Symbols: BGLU40 | beta glucosidase 40 | chr1:9178513-9181726 FORWARD LENGTH=510;; (*ITAG) Solyc01g010390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5254174-5260994 transcript_region:SL2.40ch01:5254174..5260994+ go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00006815g0013.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0.5|2|0|95; (*GB) gi|356500319|ref|XP_003518980.1| (e_value=1e-47) PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max];; (*SWP) sp|Q9SRX4|PME7_ARATH (e_value=2e-45) Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1;; (*TAIR) AT1G02810.1 (e_value=2e-46) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc09g075330.2.1 (e_value=7e-54) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00006815g0014.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|204; (*GB) gi|255564230|ref|XP_002523112.1| (e_value=3e-52) Pectinesterase-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q8RXK7|PME41_ARATH (e_value=4e-34) Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2;; (*TAIR) AT4G02330.1 (e_value=3e-35) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573;; (*ITAG) Solyc09g075330.2.1 (e_value=5e-64) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00004843g0001.1 protein AED:0.20 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|15418710|gb|AAG31014.1| (e_value=1e-50) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-18) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=2e-12) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc09g064680.1.1 (e_value=3e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57622457-57624959 transcript_region:SL2.40ch09:57622457..57624959- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006915 NbS00004843g0005.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|0.5|0.33|3|0|459; (*GB) gi|357469103|ref|XP_003604836.1| (e_value=2e-80) hypothetical protein MTR_4g019310 [Medicago truncatula];; (*TAIR) AT5G01120.1 (e_value=2e-51) | Symbols: | Protein of unknown function (DUF674) | chr5:45281-46986 FORWARD LENGTH=510;; (*ITAG) Solyc09g011910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00041779g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.5|1|1|1|6|0|496; (*GB) gi|356498758|ref|XP_003518216.1| (e_value=7e-74) PREDICTED: reticulon-like protein B21-like [Glycine max];; (*SWP) sp|Q56X72|RTNLS_ARATH (e_value=5e-44) Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2;; (*TAIR) AT5G58000.1 (e_value=3e-45) | Symbols: | Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487;; (*ITAG) Solyc12g010120.1.1 (e_value=1e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3251391-3256639 transcript_region:SL2.40ch12:3251391..3256639+ go_terms:GO:0005783 functional_description:"Reticulon-like protein B21 (AHRD V1 *-*- RTNLS_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00041770g0009.1 protein AED:0.15 eAED:0.17 QI:0|0.5|0.36|1|0.5|0.45|11|7|1374; (*GB) gi|255574664|ref|XP_002528241.1| (e_value=0.0) Phytosulfokine receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q9FN37|PSKR2_ARATH (e_value=0.0) Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1;; (*TAIR) AT5G53890.1 (e_value=0.0) | Symbols: PSKR2, AtPSKR2 | phytosylfokine-alpha receptor 2 | chr5:21877235-21880345 FORWARD LENGTH=1036;; (*ITAG) Solyc07g063000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62832265-62835900 transcript_region:SL2.40ch07:62832265..62835900- go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00041770g0010.1 protein AED:0.60 eAED:0.84 QI:0|0|0|0.66|0|0|3|0|66 NbS00004527g0017.1 protein AED:0.19 eAED:0.19 QI:223|1|0.75|1|0.66|0.5|4|0|401; (*GB) gi|225465688|ref|XP_002272694.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251105 [Vitis vinifera];; (*TAIR) AT5G23200.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7807319-7808988 FORWARD LENGTH=399;; (*ITAG) Solyc12g088450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62259095-62263686 transcript_region:SL2.40ch12:62259095..62263686+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD15 (AHRD V1 ***- Q9FMY0_ARATH)"; NbS00004527g0012.1 protein AED:0.42 eAED:0.42 QI:12|0.5|0|0.66|0.5|0.33|3|0|285; (*GB) gi|302142224|emb|CBI19427.3| (e_value=2e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27700.1 (e_value=2e-52) | Symbols: | Syntaxin/t-SNARE family protein | chr1:9640394-9641752 REVERSE LENGTH=297;; (*ITAG) Solyc12g088440.1.1 (e_value=9e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62254920-62257875 transcript_region:SL2.40ch12:62254920..62257875+ go_terms:GO:0016020 functional_description:"Clathrin-coat assembly protein-like (AHRD V1 **-- Q6Z9Z3_ORYSJ); contains Interpro domain(s) IPR015260 Syntaxin 6, N-terminal "; GO:0016020 NbS00004527g0019.1 protein AED:0.00 eAED:0.00 QI:21|1|1|1|0.66|0.75|4|6|177; (*GB) gi|359491993|ref|XP_002283216.2| (e_value=4e-41) PREDICTED: uncharacterized protein LOC100248821 [Vitis vinifera]; NbS00004527g0018.1 protein AED:0.00 eAED:0.00 QI:61|1|1|1|1|1|4|46|192; (*GB) gi|359491993|ref|XP_002283216.2| (e_value=9e-69) PREDICTED: uncharacterized protein LOC100248821 [Vitis vinifera];; (*TAIR) AT4G24204.3 (e_value=2e-28) | Symbols: | RING/U-box superfamily protein | chr4:12562069-12562815 REVERSE LENGTH=178;; (*ITAG) Solyc02g092810.2.1 (e_value=8e-31) genomic_reference:SL2.40ch02 gene_region:48351756-48352986 transcript_region:SL2.40ch02:48351756..48352986- go_terms:GO:0008270 functional_description:"RNA-binding protein MEX3C (AHRD V1 *-*- MEX3C_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00004527g0005.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|147782531|emb|CAN68429.1| (e_value=6e-121) hypothetical protein VITISV_012133 [Vitis vinifera];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=7e-76) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT4G37320.1 (e_value=3e-70) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc12g088460.1.1 (e_value=2e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62264219-62265748 transcript_region:SL2.40ch12:62264219..62265748- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004527g0004.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|3059129|emb|CAA04116.1| (e_value=3e-62) cytochrome P450 [Helianthus tuberosus];; (*SWP) sp|Q9FG65|C81D1_ARATH (e_value=2e-44) Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1;; (*TAIR) AT4G37320.1 (e_value=6e-51) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc12g088460.1.1 (e_value=5e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62264219-62265748 transcript_region:SL2.40ch12:62264219..62265748- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00058843g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0|2|333|757; (*GB) gi|225454028|ref|XP_002274837.1| (e_value=0.0) PREDICTED: scarecrow-like protein 6-like [Vitis vinifera];; (*SWP) sp|O81316|SCL6_ARATH (e_value=5e-130) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=4e-131) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc01g090950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76416878-76419772 transcript_region:SL2.40ch01:76416878..76419772- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9GPD0_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00058853g0009.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.75|0|0.25|4|0|771; (*GB) gi|225434427|ref|XP_002277552.1| (e_value=0.0) PREDICTED: cation/H(+) antiporter 14-like [Vitis vinifera];; (*SWP) sp|Q9LMJ1|CHX14_ARATH (e_value=0.0) Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1;; (*TAIR) AT1G06970.1 (e_value=0.0) | Symbols: CHX14, ATCHX14 | cation/hydrogen exchanger 14 | chr1:2138109-2140818 FORWARD LENGTH=829;; (*ITAG) Solyc06g082230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44432943-44435972 transcript_region:SL2.40ch06:44432943..44435972+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 14 (AHRD V1 **** CHX14_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00058853g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.5|1|1|1|6|0|445; (*GB) gi|255560345|ref|XP_002521188.1| (e_value=5e-83) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT5G58470.2 (e_value=6e-52) | Symbols: TAF15b | TBP-associated factor 15B | chr5:23638566-23640854 REVERSE LENGTH=422;; (*ITAG) Solyc06g082220.2.1 (e_value=8e-98) genomic_reference:SL2.40ch06 gene_region:44426967-44431355 transcript_region:SL2.40ch06:44426967..44431355+ go_terms:GO:0003676,GO:0000166 functional_description:"HIV-1 Tat specific factor 1 (Fragment) (AHRD V1 *--- Q5H918_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00001899g0004.1 protein AED:0.01 eAED:0.01 QI:5|1|1|1|1|1|5|235|443; (*GB) gi|225424926|ref|XP_002277342.1| (e_value=0.0) PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera];; (*SWP) sp|Q9CAR3|KINGL_ARATH (e_value=3e-128) SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1;; (*TAIR) AT1G69800.1 (e_value=3e-129) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:26274416-26276105 REVERSE LENGTH=447;; (*ITAG) Solyc01g010700.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:5726264-5728807 transcript_region:SL2.40ch01:5726264..5728807- functional_description:"AKIN gamma (AHRD V1 **-- B4FX20_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00014916g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|137; (*GB) gi|12003402|gb|AAG43558.1|AF211540_1 (e_value=6e-61) Avr9/Cf-9 rapidly elicited protein 75 [Nicotiana tabacum];; (*ITAG) Solyc11g010250.1.1 (e_value=1e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3317088-3317513 transcript_region:SL2.40ch11:3317088..3317513- functional_description:"Avr9/Cf-9 rapidly elicited protein 75 (AHRD V1 ***- Q9FQY9_TOBAC)"; NbS00050875g0001.1 protein AED:0.10 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|319; (*ITAG) Solyc02g079160.2.1 (e_value=8e-36) genomic_reference:SL2.40ch02 gene_region:38350501-38351740 transcript_region:SL2.40ch02:38350501..38351740+ functional_description:"Unknown Protein (AHRD V1)"; NbS00054926g0013.1 protein AED:0.16 eAED:0.16 QI:161|0.25|0.2|1|0.5|0.8|5|0|349; (*GB) gi|350536789|ref|NP_001234265.1| (e_value=2e-67) uncharacterized protein LOC100505457 [Solanum lycopersicum];; (*ITAG) Solyc12g014120.1.1 (e_value=5e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4931940-4933799 transcript_region:SL2.40ch12:4931940..4933799- functional_description:"Unknown Protein (AHRD V1)"; NbS00054926g0001.1 protein AED:0.03 eAED:0.17 QI:0|1|0.5|1|0|0|2|444|591; (*GB) gi|307557075|gb|ADN51990.1| (e_value=1e-157) lanceolate [Capsicum annuum];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=3e-87) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=2e-88) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc07g062680.1.1 (e_value=7e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62593583-62594785 transcript_region:SL2.40ch07:62593583..62594785+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *--* CYCLD_ANTML); contains Interpro domain(s) IPR017887 Transcription factor TCP subgroup "; GO:0003700 NbS00054926g0009.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.33|1|1|3|0|184 NbS00029777g0001.1 protein AED:0.01 eAED:0.01 QI:60|0|0.5|1|0|1|2|177|210; (*GB) gi|297746206|emb|CBI16262.3| (e_value=1e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=9e-64) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=7e-65) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc06g005090.2.1 (e_value=7e-89) genomic_reference:SL2.40ch06 gene_region:104026-105417 transcript_region:SL2.40ch06:104026..105417- go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00013600g0010.1 protein AED:0.16 eAED:0.16 QI:285|0.85|0.8|1|0.64|0.73|15|336|1023; (*GB) gi|255548760|ref|XP_002515436.1| (e_value=9e-47) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT4G31880.1 (e_value=2e-38) | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873;; (*ITAG) Solyc03g117010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60323253-60335993 transcript_region:SL2.40ch03:60323253..60335993- functional_description:"Sister chromatid cohesion protein PDS5 homolog B (AHRD V1 *--- PDS5B_RAT)"; NbS00013600g0001.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|225443088|ref|XP_002271967.1| (e_value=3e-37) PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis vinifera];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=2e-13) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G80680.1 (e_value=6e-36) | Symbols: SAR3, MOS3, PRE, NUP96 | SUPPRESSOR OF AUXIN RESISTANCE 3 | chr1:30324219-30328489 FORWARD LENGTH=1046;; (*ITAG) Solyc03g117120.2.1 (e_value=6e-64) genomic_reference:SL2.40ch03 gene_region:60419258-60426888 transcript_region:SL2.40ch03:60419258..60426888- go_terms:GO:0015288 functional_description:"Nucleoporin (Fragment) (AHRD V1 *--- Q677F1_HYAOR); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0015288 NbS00009724g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.77|0.5|0.8|0.66|0.8|10|0|574; (*GB) gi|359476999|ref|XP_002263942.2| (e_value=0.0) PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=1e-33) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT5G50780.1 (e_value=5e-22) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc02g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40576895-40587329 transcript_region:SL2.40ch02:40576895..40587329+ go_terms:GO:0005524,GO:0008270 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524,GO:0008270 NbS00009724g0007.1 protein AED:0.25 eAED:0.25 QI:147|0.25|0.4|0.6|0.5|0.6|5|0|108 NbS00036146g0003.1 protein AED:0.73 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|86 NbS00036146g0002.1 protein AED:0.31 eAED:0.40 QI:0|0|0|1|0|0|2|0|107 NbS00019221g0003.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|297807405|ref|XP_002871586.1| (e_value=1e-81) glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=4e-41) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G13810.1 (e_value=5e-82) | Symbols: | Glutaredoxin family protein | chr5:4455769-4456593 FORWARD LENGTH=274;; (*ITAG) Solyc03g078380.1.1 (e_value=1e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44318708-44319493 transcript_region:SL2.40ch03:44318708..44319493+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7M5W6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00019221g0008.1 protein AED:0.11 eAED:0.11 QI:603|0.33|0.5|1|0|0|4|0|343; (*GB) gi|225435979|ref|XP_002271597.1| (e_value=5e-102) PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera];; (*SWP) sp|Q8GWZ6|SRR1_ARATH (e_value=4e-83) Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2;; (*TAIR) AT5G59560.2 (e_value=3e-84) | Symbols: SRR1 | sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275;; (*ITAG) Solyc11g005260.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:219201-221453 transcript_region:SL2.40ch11:219201..221453+ functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 **-- Q4PRK8_ARATH); contains Interpro domain(s) IPR012942 SRR1 "; NbS00019221g0011.1 protein AED:0.14 eAED:0.44 QI:0|0|0|0.66|0|0|3|0|76; (*ITAG) Solyc05g041920.2.1 (e_value=4e-16) genomic_reference:SL2.40ch05 gene_region:53383703-53387183 transcript_region:SL2.40ch05:53383703..53387183- go_terms:GO:0005515 functional_description:"Ribonuclease 3 (AHRD V1 ***- C3FP31_BACTB); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00046075g0003.1 protein AED:0.22 eAED:0.22 QI:215|1|1|1|0.4|0.5|6|390|317; (*GB) gi|316936734|gb|ADU60361.1| (e_value=0.0) glutamyl-tRNA reductase binding protein [Nicotiana tabacum];; (*TAIR) AT3G21200.1 (e_value=9e-123) | Symbols: PGR7 | proton gradient regulation 7 | chr3:7436091-7437845 FORWARD LENGTH=317;; (*ITAG) Solyc03g123880.2.1 (e_value=2e-161) genomic_reference:SL2.40ch03 gene_region:64623069-64625746 transcript_region:SL2.40ch03:64623069..64625746+ functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 **-- Q01TW9_SOLUE); contains Interpro domain(s) IPR009002 FMN-binding split barrel, related "; NbS00009504g0009.1 protein AED:0.11 eAED:0.12 QI:0|0.90|0.66|1|1|1|12|0|910; (*GB) gi|56744189|dbj|BAD81034.1| (e_value=0.0) potassium channel NKT1 [Nicotiana tabacum];; (*SWP) sp|Q38998|AKT1_ARATH (e_value=0.0) Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2;; (*TAIR) AT2G26650.1 (e_value=0.0) | Symbols: AKT1, ATAKT1, KT1 | K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857;; (*ITAG) Solyc08g066990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53088640-53094422 transcript_region:SL2.40ch08:53088640..53094422- go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** O24382_SOLTU); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00009504g0013.1 protein AED:0.15 eAED:0.16 QI:0|0.85|0.8|0.93|0.78|0.86|15|185|697; (*GB) gi|225430194|ref|XP_002282436.1| (e_value=0.0) PREDICTED: boron transporter 4 [Vitis vinifera];; (*SWP) sp|Q9XI23|BOR4_ARATH (e_value=0.0) Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1;; (*TAIR) AT1G15460.1 (e_value=0.0) | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683;; (*ITAG) Solyc08g066960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53054985-53063067 transcript_region:SL2.40ch08:53054985..53063067+ go_terms:GO:0046715 functional_description:"Boron transporter 2 (AHRD V1 **-* A8WCD9_WHEAT); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0046715 NbS00009504g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|0.66|1|1|3|0|239; (*GB) gi|224141855|ref|XP_002324277.1| (e_value=2e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|O78328|DXS_CAPAN (e_value=1e-107) Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1;; (*TAIR) AT5G11380.1 (e_value=1e-128) | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate synthase 3 | chr5:3630172-3633250 FORWARD LENGTH=700;; (*ITAG) Solyc08g066950.2.1 (e_value=6e-157) genomic_reference:SL2.40ch08 gene_region:53032479-53046037 transcript_region:SL2.40ch08:53032479..53046037+ go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 3 (AHRD V1 **** D7M3Q0_ARALY); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00021074g0003.1 protein AED:0.07 eAED:0.08 QI:0|0.66|0.25|1|0.33|0|4|0|129; (*GB) gi|83755093|gb|ABC46407.1| (e_value=3e-45) knotted 1-binding protein 36 [Nicotiana tabacum];; (*TAIR) AT5G03050.1 (e_value=1e-33) | Symbols: | unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:715302-715983 REVERSE LENGTH=140;; (*ITAG) Solyc03g118440.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61375887-61376641 transcript_region:SL2.40ch03:61375887..61376641+ functional_description:"Knotted 1-binding protein 36 (AHRD V1 ***- A0S861_TOBAC)"; NbS00002561g0008.1 protein AED:0.17 eAED:0.18 QI:287|0.77|0.7|1|0.55|0.6|10|300|685; (*GB) gi|225446376|ref|XP_002274225.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc10g008280.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2410792-2417679 transcript_region:SL2.40ch10:2410792..2417679- go_terms:GO:0006468 functional_description:"Cell division protein kinase 13 (AHRD V1 *-*- CDK13_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014845g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.25|1|1|1|4|0|461; (*GB) gi|47219165|emb|CAG01828.1| (e_value=1e-174) unnamed protein product [Tetraodon nigroviridis];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=4e-135) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=3e-136) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=5e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00014845g0012.1 protein AED:0.14 eAED:0.14 QI:393|1|1|1|0.91|0.84|13|200|319; (*GB) gi|1491641|emb|CAA59170.1| (e_value=0.0) dimethylallyltransferase [Capsicum annuum];; (*SWP) sp|P49351|FPPS1_LUPAL (e_value=0.0) Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1;; (*TAIR) AT4G17190.1 (e_value=0.0) | Symbols: FPS2 | farnesyl diphosphate synthase 2 | chr4:9648743-9650865 REVERSE LENGTH=342;; (*ITAG) Solyc12g015860.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5832999-5836983 transcript_region:SL2.40ch12:5832999..5836983- go_terms:GO:0008299 functional_description:"Farnesyl pyrophosphate synthase (AHRD V1 ***- O65004_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0008299 NbS00002359g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|419; (*GB) gi|225425912|ref|XP_002267341.1| (e_value=7e-111) PREDICTED: vinorine synthase [Vitis vinifera];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=2e-100) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT1G24430.1 (e_value=7e-94) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc05g014330.1.1 (e_value=9e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8165111-8166406 transcript_region:SL2.40ch05:8165111..8166406+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00002359g0006.1 protein AED:0.14 eAED:0.14 QI:793|1|0.90|1|0.9|0.72|11|530|743; (*GB) gi|359491054|ref|XP_002279401.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera];; (*SWP) sp|Q9FGW9|GTE10_ARATH (e_value=3e-149) Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2;; (*TAIR) AT5G63320.1 (e_value=2e-150) | Symbols: NPX1 | nuclear protein X1 | chr5:25374413-25378783 REVERSE LENGTH=1061;; (*ITAG) Solyc03g111090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55799870-55806252 transcript_region:SL2.40ch03:55799870..55806252- go_terms:GO:0016564 functional_description:"Bromodomain factor (AHRD V1 *--- A7A1S4_YEAS7); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0016564 NbS00002359g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|86; (*GB) gi|4514716|dbj|BAA75495.1| (e_value=1e-13) NtEPc [Nicotiana tabacum]; NbS00030983g0001.1 protein AED:0.10 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|169; (*GB) gi|41058336|gb|AAR99160.1| (e_value=1e-28) dsRNA-binding protein [Solanum lycopersicum];; (*ITAG) Solyc04g076420.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:58909755-58914890 transcript_region:SL2.40ch04:58909755..58914890+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUQ1_BRARA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00030983g0002.1 protein AED:0.20 eAED:0.34 QI:104|0|0.5|1|0|0.5|2|0|73; (*GB) gi|224139706|ref|XP_002323237.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0N8|MZT1B_ARATH (e_value=6e-25) Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=At4g09550 PE=1 SV=1;; (*TAIR) AT4G09550.1 (e_value=4e-26) | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein 1 | chr4:6039706-6039921 FORWARD LENGTH=71;; (*ITAG) Solyc06g072690.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41211765-41211932 transcript_region:SL2.40ch06:41211765..41211932- go_terms:GO:0005515 functional_description:"Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1B (AHRD V1 ***- MZT1B_ARATH)"; GO:0005515 NbS00009921g0102.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|444 NbS00009921g0101.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|123 NbS00009921g0109.1 protein AED:0.30 eAED:1.00 QI:43|0|0|1|0|0|2|122|31 NbS00023573g0001.1 protein AED:0.14 eAED:0.14 QI:342|0.94|0.94|1|0.82|0.88|18|0|1648; (*GB) gi|359492362|ref|XP_002284621.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245350 [Vitis vinifera];; (*SWP) sp|Q2LAE1|ASHH2_ARATH (e_value=3e-148) Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1;; (*TAIR) AT1G77300.2 (e_value=3e-151) | Symbols: EFS, SDG8, ASHH2, LAZ2 | histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) | chr1:29040936-29048810 REVERSE LENGTH=1501;; (*ITAG) Solyc06g059960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34256111-34278104 transcript_region:SL2.40ch06:34256111..34278104- go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K1E8_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0008270 NbS00016148g0004.1 protein AED:0.21 eAED:0.28 QI:60|0.5|0.2|1|0.25|0.2|5|0|243; (*GB) gi|1346736|sp|P49173.1|NIP1_NICAL (e_value=7e-91) RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein;; (*SWP) sp|P49173|NIP1_NICAL (e_value=2e-92) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37820.1 (e_value=3e-81) | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein 4;2 | chr5:15050261-15051542 FORWARD LENGTH=283;; (*ITAG) Solyc02g091420.2.1 (e_value=6e-89) genomic_reference:SL2.40ch02 gene_region:47291512-47293127 transcript_region:SL2.40ch02:47291512..47293127- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00058675g0004.1 protein AED:0.04 eAED:0.08 QI:0|0.5|0|1|0|0.33|3|0|528; (*GB) gi|225441317|ref|XP_002275980.1| (e_value=0.0) PREDICTED: regulatory protein NPR5 [Vitis vinifera];; (*SWP) sp|Q9ZVC2|NPR5_ARATH (e_value=0.0) Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1;; (*TAIR) AT2G41370.1 (e_value=0.0) | Symbols: BOP2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491;; (*ITAG) Solyc10g079460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60334589-60336730 transcript_region:SL2.40ch10:60334589..60336730+ go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00023927g0006.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.28|1|1|1|7|283|1109; (*GB) gi|147853795|emb|CAN81714.1| (e_value=0.0) hypothetical protein VITISV_005816 [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=9e-137) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=7e-138) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g068820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023927g0017.1 protein AED:0.29 eAED:0.29 QI:0|0.4|0.5|1|0.4|0.5|6|212|790; (*GB) gi|224056581|ref|XP_002298921.1| (e_value=5e-128) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUD6|PP230_ARATH (e_value=2e-118) Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1;; (*TAIR) AT3G14580.1 (e_value=1e-119) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4903012-4904229 FORWARD LENGTH=405;; (*ITAG) Solyc10g007520.1.1 (e_value=2e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1846321-1847484 transcript_region:SL2.40ch10:1846321..1847484+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027204g0003.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.5|1|1|1|6|0|568; (*GB) gi|255565415|ref|XP_002523698.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|Q9M0X9|4CLL7_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1;; (*TAIR) AT4G05160.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr4:2664451-2666547 FORWARD LENGTH=544;; (*ITAG) Solyc11g069050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50710072-50716678 transcript_region:SL2.40ch11:50710072..50716678+ go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9N213_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00001332g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|0.5|0.33|3|0|112; (*GB) gi|345034436|gb|AEN56122.1| (e_value=8e-31) putative ATP synthase F1 subunit 1 [Cucumis melo subsp. melo];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=4e-31) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=2e-31) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc11g039980.1.1 (e_value=1e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00033770g0002.1 protein AED:0.38 eAED:0.38 QI:59|-1|0|1|-1|0|1|0|40 NbS00030679g0013.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0.5|2|0|70; (*ITAG) Solyc06g066380.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00030679g0014.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|4|0|360; (*GB) gi|255573143|ref|XP_002527501.1| (e_value=5e-74) signal transducer, putative [Ricinus communis];; (*SWP) sp|Q0WL52|NPY5_ARATH (e_value=1e-50) BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2;; (*TAIR) AT4G37590.1 (e_value=1e-51) | Symbols: NPY5 | Phototropic-responsive NPH3 family protein | chr4:17663080-17665299 REVERSE LENGTH=580;; (*ITAG) Solyc01g107180.2.1 (e_value=2e-101) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00030679g0012.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|0|0|2|0|292; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=8e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZT8|PP354_ARATH (e_value=1e-55) Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1;; (*TAIR) AT4G37380.1 (e_value=8e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17572040-17573938 REVERSE LENGTH=632;; (*ITAG) Solyc06g066380.1.1 (e_value=5e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00030679g0011.1 protein AED:0.37 eAED:0.56 QI:0|0|0|1|0|0|2|0|213; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=6e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9MA50|PPR13_ARATH (e_value=2e-26) Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1;; (*TAIR) AT1G05750.1 (e_value=1e-27) | Symbols: PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1721523-1723025 FORWARD LENGTH=500;; (*ITAG) Solyc06g066380.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00030679g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|296083063|emb|CBI22467.3| (e_value=7e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=5e-20) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=3e-21) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00030679g0010.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|76; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=7e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62890.1 (e_value=2e-13) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23246168-23247973 FORWARD LENGTH=573;; (*ITAG) Solyc06g066380.1.1 (e_value=5e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00018793g0010.1 protein AED:0.13 eAED:0.14 QI:0|0.83|0.78|1|0.83|0.78|19|29|605; (*GB) gi|225426350|ref|XP_002270385.1| (e_value=0.0) PREDICTED: long chain acyl-CoA synthetase 4 [Vitis vinifera];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=0.0) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc01g095750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78706074-78712775 transcript_region:SL2.40ch01:78706074..78712775- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00018793g0009.1 protein AED:0.44 eAED:0.44 QI:27|0|0.5|0.5|1|0.5|2|355|47 NbS00028322g0001.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|356536003|ref|XP_003536530.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100778094 [Glycine max];; (*TAIR) AT3G22530.1 (e_value=2e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977774-7978370 REVERSE LENGTH=198;; (*ITAG) Solyc03g005190.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:115979-117377 transcript_region:SL2.40ch03:115979..117377- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 *-*- Q8LD29_ARATH); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00033090g0004.1 protein AED:0.13 eAED:0.15 QI:0|0.6|0.66|1|0.8|0.66|6|235|303; (*GB) gi|82400118|gb|ABB72798.1| (e_value=1e-166) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=5e-168) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G07090.1 (e_value=7e-162) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202410-2203805 FORWARD LENGTH=262;; (*ITAG) Solyc06g007360.2.1 (e_value=2e-170) genomic_reference:SL2.40ch06 gene_region:1393218-1395914 transcript_region:SL2.40ch06:1393218..1395914- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00004813g0102.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|494 NbS00004813g0201.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|521 NbS00004813g0312.1 protein AED:0.23 eAED:0.23 QI:385|0.85|0.8|1|0.71|0.66|15|0|1206 NbS00051044g0002.1 protein AED:0.16 eAED:0.16 QI:63|1|1|1|0.75|0.6|5|514|431; (*GB) gi|357447785|ref|XP_003594168.1| (e_value=0.0) Membrane protein, putative [Medicago truncatula];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=3e-135) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=2e-167) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc04g014680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4937457-4942883 transcript_region:SL2.40ch04:4937457..4942883- go_terms:GO:0004221 functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-* B6TDL6_MAIZE)"; GO:0004221 NbS00051044g0014.1 protein AED:0.21 eAED:0.21 QI:0|0|0.33|1|0.5|0.66|3|0|374; (*GB) gi|255554735|ref|XP_002518405.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=0.0) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=0.0) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc04g014690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4951177-4954530 transcript_region:SL2.40ch04:4951177..4954530+ go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q2HTT4_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00051044g0009.1 protein AED:0.32 eAED:0.32 QI:0|1|0.83|1|1|1|6|0|253; (*GB) gi|255554739|ref|XP_002518407.1| (e_value=6e-119) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9BTZ2|DHRS4_HUMAN (e_value=2e-51) Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3;; (*TAIR) AT4G05530.1 (e_value=3e-108) | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254;; (*ITAG) Solyc04g014670.2.1 (e_value=2e-136) genomic_reference:SL2.40ch04 gene_region:4934139-4937078 transcript_region:SL2.40ch04:4934139..4937078+ go_terms:GO:0001758 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C0BIG4_9BACT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0001758 NbS00029311g0007.1 protein AED:0.20 eAED:0.21 QI:24|0.5|0.55|1|0.75|0.66|9|672|503; (*GB) gi|296084463|emb|CBI25022.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WMY5|PP365_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1;; (*TAIR) AT5G04810.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:1390049-1393760 FORWARD LENGTH=952;; (*ITAG) Solyc11g006680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1285136-1294394 transcript_region:SL2.40ch11:1285136..1294394- go_terms:GO:0003676,GO:0000166 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LY59_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00060713g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|64; (*GB) gi|316890744|gb|ADU56818.1| (e_value=8e-36) MADS-box protein AGL2 subfamily [Coffea arabica];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=4e-35) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT5G15800.2 (e_value=3e-36) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=262;; (*ITAG) Solyc03g114840.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:58767673-58773979 transcript_region:SL2.40ch03:58767673..58773979- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor 11 (AHRD V1 **** D9IFM5_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00044347g0004.1 protein AED:0.18 eAED:0.18 QI:64|0.66|0.71|1|0.66|0.71|7|261|292; (*GB) gi|156763848|emb|CAO99126.1| (e_value=1e-134) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q2KNL6|GEDH1_OCIBA (e_value=8e-126) Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1;; (*TAIR) AT4G39330.1 (e_value=6e-106) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc11g010980.1.1 (e_value=6e-145) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4015080-4019102 transcript_region:SL2.40ch11:4015080..4019102- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- ADH2_BACST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00017471g0007.1 protein AED:0.22 eAED:0.22 QI:0|1|0.9|1|1|1|10|493|975; (*GB) gi|359494289|ref|XP_003634753.1| (e_value=0.0) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=0.0) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.1 (e_value=0.0) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1514;; (*ITAG) Solyc07g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00016624g0004.1 protein AED:0.06 eAED:0.06 QI:106|1|1|1|0.66|0.5|4|223|609; (*GB) gi|225461199|ref|XP_002283229.1| (e_value=0.0) PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00002815g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|374; (*GB) gi|225424803|ref|XP_002271160.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase-like 9-like [Vitis vinifera];; (*SWP) sp|O04536|GATL9_ARATH (e_value=0.0) Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1;; (*TAIR) AT1G70090.2 (e_value=0.0) | Symbols: GATL9, LGT8 | glucosyl transferase family 8 | chr1:26400927-26402099 FORWARD LENGTH=390;; (*ITAG) Solyc05g006510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1127274-1128431 transcript_region:SL2.40ch05:1127274..1128431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00002815g0010.1 protein AED:0.33 eAED:0.33 QI:0|0.85|0.87|1|1|1|8|411|362; (*GB) gi|59042884|gb|AAW83831.1| (e_value=0.0) E1 alpha subunit of pyruvate dehydrogenase [Petunia x hybrida];; (*SWP) sp|P52903|ODPA_SOLTU (e_value=0.0) Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G59900.1 (e_value=0.0) | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389;; (*ITAG) Solyc05g006520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1134244-1140938 transcript_region:SL2.40ch05:1134244..1140938- go_terms:GO:0050897,GO:0008270 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- B6TMS5_MAIZE); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0050897,GO:0008270 NbS00002815g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|220; (*GB) gi|225424801|ref|XP_002271090.1| (e_value=5e-92) PREDICTED: germin-like protein 3-1 [Vitis vinifera];; (*SWP) sp|P92998|GL11_ARATH (e_value=4e-73) Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2;; (*TAIR) AT1G10460.1 (e_value=3e-74) | Symbols: GLP7 | germin-like protein 7 | chr1:3439578-3440231 REVERSE LENGTH=217;; (*ITAG) Solyc05g006500.2.1 (e_value=9e-125) genomic_reference:SL2.40ch05 gene_region:1121409-1122870 transcript_region:SL2.40ch05:1121409..1122870+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 5 (AHRD V1 ***- C7S8B9_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00002815g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|162568914|gb|ABY19383.1| (e_value=5e-64) putative chlorophyllase [Nicotiana tabacum];; (*SWP) sp|Q9M7I7|CLH2_ARATH (e_value=8e-46) Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1;; (*TAIR) AT5G43860.1 (e_value=6e-47) | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17630492-17632184 FORWARD LENGTH=318;; (*ITAG) Solyc06g053980.2.1 (e_value=2e-61) genomic_reference:SL2.40ch06 gene_region:33352567-33354119 transcript_region:SL2.40ch06:33352567..33354119- go_terms:GO:0047746 functional_description:"Chlorophyllase 2 (AHRD V1 **** Q8GTM3_BRAOL); contains Interpro domain(s) IPR010821 Chlorophyllase "; GO:0047746 NbS00003114g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.92|0.86|1|0.85|0.86|15|330|859; (*GB) gi|297741823|emb|CBI33136.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5ZLV4|NSUN2_CHICK (e_value=1e-138) tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus GN=NSUN2 PE=2 SV=1;; (*TAIR) AT2G22400.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:9504823-9508788 REVERSE LENGTH=808;; (*ITAG) Solyc11g010110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3225347-3233598 transcript_region:SL2.40ch11:3225347..3233598- go_terms:GO:0008168 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_SHESH); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168 NbS00035713g0003.1 protein AED:0.27 eAED:0.27 QI:305|0.90|1|1|0.90|0.83|12|269|398; (*GB) gi|37783300|gb|AAP41026.1| (e_value=0.0) NTA15 protein [Nicotiana tabacum];; (*TAIR) AT1G66330.2 (e_value=4e-121) | Symbols: | senescence-associated family protein | chr1:24729880-24732144 REVERSE LENGTH=417;; (*ITAG) Solyc11g011170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4238113-4242599 transcript_region:SL2.40ch11:4238113..4242599- functional_description:"ATA15 protein (AHRD V1 **-- Q5K6K5_ARATH)"; NbS00011417g0009.1 protein AED:0.11 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|232; (*GB) gi|356556274|ref|XP_003546451.1| (e_value=2e-44) PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max];; (*SWP) sp|P46604|HAT22_ARATH (e_value=3e-42) Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1;; (*TAIR) AT4G37790.1 (e_value=3e-43) | Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278;; (*ITAG) Solyc07g054380.1.1 (e_value=7e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60042798-60043594 transcript_region:SL2.40ch07:60042798..60043594- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein 9 (AHRD V1 ***- D7LE40_ARALY); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00011417g0011.1 protein AED:0.06 eAED:0.06 QI:7|1|0.33|1|1|1|3|0|497; (*GB) gi|147859636|emb|CAN83117.1| (e_value=2e-35) hypothetical protein VITISV_017709 [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=8e-24) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=6e-25) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc07g054370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60039862-60042304 transcript_region:SL2.40ch07:60039862..60042304+ functional_description:"F-box/LRR-repeat protein At3g59200 (AHRD V1 ***- FBL64_ARATH); contains Interpro domain(s) IPR013596 FBD "; NbS00011417g0001.1 protein AED:0.20 eAED:0.36 QI:0|1|0.75|1|0|0.25|4|427|202; (*GB) gi|225447264|ref|XP_002273081.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100253339 [Vitis vinifera];; (*TAIR) AT2G20815.1 (e_value=9e-17) | Symbols: QWRF3 | Family of unknown function (DUF566) | chr2:8959988-8961917 FORWARD LENGTH=482;; (*ITAG) Solyc07g054390.1.1 (e_value=7e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60046650-60048736 transcript_region:SL2.40ch07:60046650..60048736+ functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *--- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00024094g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.94|0.83|1|0.64|0.55|18|1469|1163; (*GB) gi|359482596|ref|XP_002279481.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243006 [Vitis vinifera];; (*TAIR) AT1G15240.2 (e_value=0.0) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr1:5243799-5248604 FORWARD LENGTH=1020;; (*ITAG) Solyc12g044220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44542863-44552185 transcript_region:SL2.40ch12:44542863..44552185- go_terms:GO:0007154 functional_description:"AT1G15240 (Fragment) (AHRD V1 *-*- Q6DT71_ARALP); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00030412g0002.1 protein AED:0.23 eAED:0.24 QI:0|0.8|0.66|1|1|1|6|0|301; (*GB) gi|77999263|gb|ABB16978.1| (e_value=8e-154) salt tolerance protein 5-like protein [Solanum tuberosum];; (*SWP) sp|O35685|NUDC_MOUSE (e_value=3e-69) Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1;; (*TAIR) AT5G53400.1 (e_value=1e-102) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc03g083390.2.1 (e_value=2e-145) genomic_reference:SL2.40ch03 gene_region:46783589-46788273 transcript_region:SL2.40ch03:46783589..46788273+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00037297g0018.1 protein AED:0.00 eAED:0.00 QI:33|1|0.5|1|0|0|2|0|684; (*GB) gi|297739257|emb|CBI28908.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LR67|PPR9_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1;; (*TAIR) AT1G03560.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:890428-892410 REVERSE LENGTH=660;; (*ITAG) Solyc10g008510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2625491-2627626 transcript_region:SL2.40ch10:2625491..2627626+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCG2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00037297g0012.1 protein AED:0.15 eAED:0.15 QI:172|1|1|1|0.25|0.4|5|127|602; (*GB) gi|255553847|ref|XP_002517964.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT4G03400.1 (e_value=0.0) | Symbols: DFL2, GH3-10 | Auxin-responsive GH3 family protein | chr4:1497675-1499729 REVERSE LENGTH=591;; (*ITAG) Solyc10g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2637742-2643134 transcript_region:SL2.40ch10:2637742..2643134+ go_terms:GO:0080123,GO:0070566 functional_description:"Auxin-responsive GH3-like (AHRD V1 ***- Q0GUM1_ARATH); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00037297g0017.1 protein AED:0.35 eAED:0.39 QI:0|0|0|0.8|0|0.4|5|0|318; (*ITAG) Solyc03g122200.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00037297g0015.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|92; (*ITAG) Solyc01g111490.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00035907g0002.1 protein AED:0.07 eAED:0.30 QI:0|0|0|1|0|0|5|0|249; (*GB) gi|224127764|ref|XP_002320158.1| (e_value=2e-12) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g095100.2.1 (e_value=9e-17) genomic_reference:SL2.40ch01 gene_region:78259686-78261279 transcript_region:SL2.40ch01:78259686..78261279+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00001712g0020.1 protein AED:0.15 eAED:0.19 QI:0|0.83|0.57|1|0.83|0.71|7|0|411; (*GB) gi|225458489|ref|XP_002284120.1| (e_value=3e-156) PREDICTED: probable thylakoidal processing peptidase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M9Z2|TPP2_ARATH (e_value=2e-133) Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1;; (*TAIR) AT1G06870.1 (e_value=2e-134) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:2108832-2110642 FORWARD LENGTH=367;; (*ITAG) Solyc04g079550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61565562-61568797 transcript_region:SL2.40ch04:61565562..61568797- go_terms:GO:0004175 functional_description:"Signal peptidase I (AHRD V1 *-*- B4W1T4_9CYAN); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004175 NbS00001712g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|3|0|192; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-33) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g015800.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11015336-11017255 transcript_region:SL2.40ch09:11015336..11017255- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00001712g0016.1 protein AED:0.11 eAED:0.11 QI:429|1|1|1|0.8|0.66|6|109|524; (*GB) gi|255538442|ref|XP_002510286.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=0.0) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc04g079560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61576505-61581504 transcript_region:SL2.40ch04:61576505..61581504+ go_terms:GO:0015171 functional_description:"Lysine/histidine transporter (AHRD V1 **** B9MVJ1_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00001712g0017.1 protein AED:0.44 eAED:0.44 QI:4|0|0|1|0|0|2|0|138; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-21) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00001712g0018.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|3|0|128; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00036731g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|233 NbS00036731g0008.1 protein AED:0.08 eAED:0.08 QI:244|1|1|1|1|1|2|267|321; (*GB) gi|359480530|ref|XP_003632482.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 5-like [Vitis vinifera];; (*SWP) sp|Q498M4|WDR5_RAT (e_value=5e-160) WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1;; (*TAIR) AT3G49660.1 (e_value=1e-176) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18413690-18415223 FORWARD LENGTH=317;; (*ITAG) Solyc02g091790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47584642-47589198 transcript_region:SL2.40ch02:47584642..47589198+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0035064 NbS00036731g0007.1 protein AED:0.12 eAED:0.12 QI:629|0.93|0.93|1|0.86|0.93|16|489|825; (*GB) gi|255576027|ref|XP_002528909.1| (e_value=0.0) Chromosome-associated kinesin KIF4A, putative [Ricinus communis];; (*SWP) sp|Q2TAC6|KIF19_HUMAN (e_value=1e-96) Kinesin-like protein KIF19 OS=Homo sapiens GN=KIF19 PE=2 SV=2;; (*TAIR) AT3G49650.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18405260-18409402 REVERSE LENGTH=813;; (*ITAG) Solyc02g091780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47576842-47584021 transcript_region:SL2.40ch02:47576842..47584021+ go_terms:GO:0008017 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9SCJ4_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017 NbS00019904g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|255586742|ref|XP_002533991.1| (e_value=1e-147) purine transporter, putative [Ricinus communis];; (*SWP) sp|Q9SY29|PUP4_ARATH (e_value=6e-115) Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1;; (*TAIR) AT1G30840.2 (e_value=5e-116) | Symbols: PUP4 | purine permease 4 | chr1:10974581-10975729 FORWARD LENGTH=382;; (*ITAG) Solyc02g082170.1.1 (e_value=4e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40455811-40457046 transcript_region:SL2.40ch02:40455811..40457046- go_terms:GO:0005345 functional_description:"Purine permease (AHRD V1 *--* B6TET5_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00054181g0007.1 protein AED:0.07 eAED:0.12 QI:0|0.8|0.33|0.83|1|0.83|6|0|313; (*GB) gi|365222924|gb|AEW69814.1| (e_value=2e-150) Hop-interacting protein THI115 [Solanum lycopersicum];; (*TAIR) AT5G13020.1 (e_value=1e-97) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc10g044960.1.1 (e_value=3e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24529174-24537734 transcript_region:SL2.40ch10:24529174..24537734+ functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00054181g0006.1 protein AED:0.17 eAED:0.17 QI:160|1|0.8|1|1|1|5|0|470; (*GB) gi|255542173|ref|XP_002512150.1| (e_value=2e-134) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5RF97|BCD1_PONAB (e_value=6e-30) Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1;; (*TAIR) AT1G04945.1 (e_value=2e-114) | Symbols: | HIT-type Zinc finger family protein | chr1:1400969-1402651 FORWARD LENGTH=367;; (*ITAG) Solyc01g074020.2.1 (e_value=4e-165) genomic_reference:SL2.40ch01 gene_region:70586854-70593110 transcript_region:SL2.40ch01:70586854..70593110+ functional_description:"Box C/D snoRNA (AHRD V1 *--- A6ZSU7_YEAS7); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; NbS00013216g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|357455123|ref|XP_003597842.1| (e_value=2e-65) 30S ribosomal protein S11 [Medicago truncatula];; (*SWP) sp|Q4G348|RR11_EMIHU (e_value=2e-14) 30S ribosomal protein S11, chloroplastic OS=Emiliania huxleyi GN=rps11 PE=3 SV=1;; (*TAIR) AT1G31817.1 (e_value=3e-53) | Symbols: NFD3 | Ribosomal L18p/L5e family protein | chr1:11414932-11416356 REVERSE LENGTH=314;; (*ITAG) Solyc08g075720.1.1 (e_value=7e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57012295-57012765 transcript_region:SL2.40ch08:57012295..57012765- go_terms:GO:0048027 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- A3UD87_9RHOB); contains Interpro domain(s) IPR001971 Ribosomal protein S11 "; GO:0048027 NbS00013216g0005.1 protein AED:0.33 eAED:0.37 QI:48|1|0.71|1|0.83|1|7|212|247; (*GB) gi|292630750|sp|D1I234.1|DRE2_VITVI (e_value=1e-87) RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog;; (*SWP) sp|D1I234|DRE2_VITVI (e_value=4e-89) Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1;; (*TAIR) AT5G18400.3 (e_value=7e-66) | Symbols: | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | chr5:6092955-6094876 REVERSE LENGTH=272;; (*ITAG) Solyc03g119420.2.1 (e_value=7e-120) genomic_reference:SL2.40ch03 gene_region:62090764-62095229 transcript_region:SL2.40ch03:62090764..62095229+ go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00013216g0101.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|102 NbS00011682g0003.1 protein AED:0.10 eAED:0.26 QI:0|0.5|0|1|0|0|3|0|169 NbS00011682g0001.1 protein AED:0.39 eAED:0.71 QI:0|0|0.5|1|1|1|2|105|70 NbS00021704g0004.1 protein AED:0.29 eAED:0.29 QI:192|1|1|1|0.66|0.6|10|511|343; (*GB) gi|356505618|ref|XP_003521587.1| (e_value=0.0) PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max];; (*SWP) sp|Q6TUG0|DJB11_RAT (e_value=2e-95) DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1;; (*TAIR) AT3G62600.1 (e_value=0.0) | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family protein | chr3:23151038-23153346 REVERSE LENGTH=346;; (*ITAG) Solyc01g079610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71223893-71229871 transcript_region:SL2.40ch01:71223893..71229871- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00024525g0002.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.8|1|0.25|0.2|5|932|77 NbS00008053g0016.1 protein AED:0.16 eAED:0.16 QI:270|1|1|1|0.5|0.57|7|1732|178; (*GB) gi|359496964|ref|XP_002269957.2| (e_value=1e-63) PREDICTED: pre-rRNA-processing protein esf1-like [Vitis vinifera];; (*SWP) sp|Q76MT4|ESF1_RAT (e_value=4e-40) ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1;; (*TAIR) AT3G01160.1 (e_value=2e-57) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | chr3:54655-57449 REVERSE LENGTH=713;; (*ITAG) Solyc02g083470.2.1 (e_value=9e-85) genomic_reference:SL2.40ch02 gene_region:41440829-41445430 transcript_region:SL2.40ch02:41440829..41445430- functional_description:"Pre-rRNA-processing protein ESF1 (AHRD V1 *-*- C5FM19_NANOT)"; NbS00008053g0021.1 protein AED:0.03 eAED:0.04 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|131; (*GB) gi|255586862|ref|XP_002534041.1| (e_value=5e-39) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g083440.2.1 (e_value=7e-66) genomic_reference:SL2.40ch02 gene_region:41425497-41426635 transcript_region:SL2.40ch02:41425497..41426635+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008053g0020.1 protein AED:0.10 eAED:0.10 QI:288|0.9|0.81|1|0.4|0.54|11|1104|239; (*GB) gi|225431324|ref|XP_002269880.1| (e_value=2e-109) PREDICTED: aspartic proteinase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=2e-42) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT4G35880.1 (e_value=2e-94) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:16993339-16995721 FORWARD LENGTH=524;; (*ITAG) Solyc02g083450.2.1 (e_value=7e-147) genomic_reference:SL2.40ch02 gene_region:41427643-41433090 transcript_region:SL2.40ch02:41427643..41433090+ go_terms:GO:0006508 functional_description:"Aspartic proteinase-like protein 1 (AHRD V1 **-- ASPL1_ARATH); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00008053g0002.1 protein AED:0.17 eAED:0.18 QI:0|0.7|0.63|0.90|0.9|0.81|11|239|531; (*GB) gi|255586856|ref|XP_002534038.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=9e-72) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT2G17760.1 (e_value=5e-157) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:7713488-7716269 FORWARD LENGTH=513;; (*ITAG) Solyc02g083460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41436441-41440462 transcript_region:SL2.40ch02:41436441..41440462+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LAA8_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00008053g0017.1 protein AED:0.38 eAED:1.00 QI:0|0|0|1|0|0|2|0|76 NbS00008053g0101.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|832 NbS00030453g0008.1 protein AED:0.06 eAED:0.06 QI:133|0.71|0.87|0.87|0.57|0.62|8|106|430; (*GB) gi|224108043|ref|XP_002314701.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=5e-15) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G05370.1 (e_value=1e-167) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:1569418-1572280 REVERSE LENGTH=417;; (*ITAG) Solyc09g075970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63110707-63114394 transcript_region:SL2.40ch09:63110707..63114394- functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q10PW5_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00004052g0010.1 protein AED:0.00 eAED:0.00 QI:51|1|1|1|1|1|2|266|188; (*GB) gi|147845835|emb|CAN82190.1| (e_value=2e-47) hypothetical protein VITISV_031115 [Vitis vinifera];; (*TAIR) AT3G27160.1 (e_value=2e-43) | Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183;; (*ITAG) Solyc02g068090.2.1 (e_value=4e-47) genomic_reference:SL2.40ch02 gene_region:32718467-32721668 transcript_region:SL2.40ch02:32718467..32721668- go_terms:GO:0005840 functional_description:"30S ribosomal protein S21, chloroplastic (Fragment) (AHRD V1 *--- RR21_SPIOL); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00004052g0003.1 protein AED:0.11 eAED:0.11 QI:260|0.87|0.88|1|1|1|9|137|408; (*GB) gi|255536941|ref|XP_002509537.1| (e_value=0.0) Triacylglycerol lipase 2 precursor, putative [Ricinus communis];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=3e-174) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=2e-175) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc02g094040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49264758-49267969 transcript_region:SL2.40ch02:49264758..49267969+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00004052g0011.1 protein AED:0.21 eAED:0.22 QI:0|1|0.66|1|1|1|3|0|173; (*GB) gi|351725837|ref|NP_001237874.1| (e_value=5e-61) uncharacterized protein LOC100305865 precursor [Glycine max];; (*SWP) sp|Q41001|BCP_PEA (e_value=9e-25) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G27200.1 (e_value=1e-50) | Symbols: | Cupredoxin superfamily protein | chr3:10043738-10044340 REVERSE LENGTH=174;; (*ITAG) Solyc02g094050.2.1 (e_value=1e-82) genomic_reference:SL2.40ch02 gene_region:49268488-49269541 transcript_region:SL2.40ch02:49268488..49269541+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00004052g0013.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|0.66|3|0|233; (*GB) gi|225452132|ref|XP_002262897.1| (e_value=2e-59) PREDICTED: uncharacterized protein At3g27210-like [Vitis vinifera];; (*SWP) sp|Q9LK32|Y3721_ARATH (e_value=2e-12) Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1;; (*TAIR) AT3G01860.1 (e_value=7e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:302869-304329 FORWARD LENGTH=223;; (*ITAG) Solyc02g094030.2.1 (e_value=2e-124) genomic_reference:SL2.40ch02 gene_region:49260246-49263216 transcript_region:SL2.40ch02:49260246..49263216+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022865g0008.1 protein AED:0.15 eAED:0.15 QI:179|1|1|1|1|1|4|244|240; (*GB) gi|359477469|ref|XP_002279368.2| (e_value=2e-83) PREDICTED: BI1-like protein-like [Vitis vinifera];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=1e-73) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT4G15470.1 (e_value=8e-75) | Symbols: | Bax inhibitor-1 family protein | chr4:8843661-8845505 FORWARD LENGTH=256;; (*ITAG) Solyc01g080330.2.1 (e_value=4e-93) genomic_reference:SL2.40ch01 gene_region:72068095-72070591 transcript_region:SL2.40ch01:72068095..72070591+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TGH7_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00022865g0007.1 protein AED:0.40 eAED:0.46 QI:0|0|0|1|0|0|2|0|72; (*GB) gi|297739533|emb|CBI29715.3| (e_value=3e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G80160.1 (e_value=3e-15) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc01g103590.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00034570g0004.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|1|1|3|0|323; (*GB) gi|255544059|ref|XP_002513092.1| (e_value=1e-106) short chain alcohol dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=3e-93) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=3e-94) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc04g071940.2.1 (e_value=4e-118) genomic_reference:SL2.40ch04 gene_region:56541320-56546303 transcript_region:SL2.40ch04:56541320..56546303- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00010608g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|192; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=2e-62) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT2G21100.1 (e_value=6e-41) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:9048687-9049336 REVERSE LENGTH=187;; (*ITAG) Solyc02g032040.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:18059156-18059731 transcript_region:SL2.40ch02:18059156..18059731+ functional_description:"Disease resistance response protein (AHRD V1 ***- A8IXC7_BRACM); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010608g0018.1 protein AED:0.13 eAED:0.12 QI:115|1|0.87|1|1|1|8|163|513; (*GB) gi|350539513|ref|NP_001234675.1| (e_value=0.0) LAX2 protein [Solanum lycopersicum];; (*SWP) sp|Q8L883|LAX5_MEDTR (e_value=0.0) Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1;; (*TAIR) AT2G21050.1 (e_value=0.0) | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483;; (*ITAG) Solyc01g111310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89353214-89356755 transcript_region:SL2.40ch01:89353214..89356755- go_terms:GO:0015171 functional_description:"Transmembrane amino acid transporter protein (AHRD V1 **** A8NP23_BRUMA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00010608g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|121631|sp|P27484.1|GRP2_NICSY (e_value=2e-46) RecName: Full=Glycine-rich protein 2;; (*SWP) sp|P27484|GRP2_NICSY (e_value=7e-48) Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1;; (*TAIR) AT2G21060.1 (e_value=9e-32) | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich protein 2B | chr2:9036983-9037588 REVERSE LENGTH=201;; (*ITAG) Solyc10g055250.1.1 (e_value=7e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51991131-51991640 transcript_region:SL2.40ch10:51991131..51991640- go_terms:GO:0003676,GO:0008270,GO:0006355 functional_description:"Cold shock protein-1 (AHRD V1 *-*- Q8LPA7_WHEAT); contains Interpro domain(s) IPR002059 Cold-shock protein, DNA-binding "; GO:0003676,GO:0008270,GO:0006355 NbS00010608g0025.1 protein AED:0.01 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|754; (*GB) gi|255574758|ref|XP_002528287.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G34940.1 (e_value=0.0) | Symbols: ARO1 | armadillo repeat only 1 | chr4:16639760-16641754 FORWARD LENGTH=664;; (*ITAG) Solyc01g111270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89342004-89344615 transcript_region:SL2.40ch01:89342004..89344615+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 ***- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00010608g0012.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|1509; (*GB) gi|359474855|ref|XP_002277504.2| (e_value=0.0) PREDICTED: translocase of chloroplast 120, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SLF3|TC132_ARATH (e_value=0.0) Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1;; (*TAIR) AT2G16640.1 (e_value=0.0) | Symbols: ATTOC132, TOC132 | multimeric translocon complex in the outer envelope membrane 132 | chr2:7211489-7215109 REVERSE LENGTH=1206;; (*ITAG) Solyc01g111240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89317519-89321842 transcript_region:SL2.40ch01:89317519..89321842- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *--- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00010608g0013.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|181; (*GB) gi|224105209|ref|XP_002313728.1| (e_value=4e-76) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21100.1 (e_value=2e-65) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:9048687-9049336 REVERSE LENGTH=187;; (*ITAG) Solyc01g111230.2.1 (e_value=3e-106) genomic_reference:SL2.40ch01 gene_region:89313649-89314591 transcript_region:SL2.40ch01:89313649..89314591+ functional_description:"Disease resistance response like protein (AHRD V1 ***- Q9SZP7_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010608g0024.1 protein AED:0.31 eAED:0.40 QI:0|0|0|0.6|0.25|0.2|5|0|250; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010608g0026.1 protein AED:0.23 eAED:0.41 QI:11|0.2|0|0.5|0.6|0.33|6|0|209; (*ITAG) Solyc03g044840.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00010608g0023.1 protein AED:0.47 eAED:0.67 QI:0|0|0|0.75|0|0|4|0|102; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00026515g0010.1 protein AED:0.08 eAED:0.10 QI:0|1|0|1|1|1|2|0|542; (*GB) gi|225423739|ref|XP_002277006.1| (e_value=0.0) PREDICTED: cytochrome P450 86B1 [Vitis vinifera];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=0.0) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT5G23190.1 (e_value=0.0) | Symbols: CYP86B1 | cytochrome P450, family 86, subfamily B, polypeptide 1 | chr5:7803478-7805659 REVERSE LENGTH=559;; (*ITAG) Solyc02g014730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:9180513-9182410 transcript_region:SL2.40ch02:9180513..9182410- go_terms:GO:0008393 functional_description:"Cytochrome P450"; GO:0008393 NbS00026515g0001.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.33|1|1|1|3|0|188; (*GB) gi|225423749|ref|XP_002277069.1| (e_value=5e-87) PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FN42|CLPP2_ARATH (e_value=9e-84) ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1;; (*TAIR) AT5G23140.1 (e_value=7e-85) | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease P7 | chr5:7783811-7784826 FORWARD LENGTH=241;; (*ITAG) Solyc04g009310.2.1 (e_value=5e-96) genomic_reference:SL2.40ch04 gene_region:2760682-2765405 transcript_region:SL2.40ch04:2760682..2765405+ go_terms:GO:0005515 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A5AL82_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515 NbS00018780g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|339; (*GB) gi|297734208|emb|CBI15455.3| (e_value=2e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=7e-78) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT3G18400.1 (e_value=5e-94) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314;; (*ITAG) Solyc12g036480.1.1 (e_value=3e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31380780-31383643 transcript_region:SL2.40ch12:31380780..31383643- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00018780g0106.1 protein AED:0.07 eAED:0.07 QI:39|0.8|0.66|1|0.4|0.33|6|0|576 NbS00018780g0105.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|0|0|4|0|229 NbS00009893g0012.1 protein AED:0.12 eAED:0.12 QI:730|1|1|1|1|1|3|402|343; (*GB) gi|298204770|emb|CBI25268.3| (e_value=6e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g005980.1.1 (e_value=1e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:820324-821549 transcript_region:SL2.40ch07:820324..821549+ go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00009893g0013.1 protein AED:0.28 eAED:0.29 QI:0|0.16|0|1|0.66|0.57|7|0|1117; (*GB) gi|225445782|ref|XP_002273616.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267388 [Vitis vinifera];; (*TAIR) AT4G30790.1 (e_value=0.0) | Symbols: | INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). | chr4:14993383-14997785 REVERSE LENGTH=1148;; (*ITAG) Solyc07g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:808577-817510 transcript_region:SL2.40ch07:808577..817510+ go_terms:GO:0006508 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019460 Autophagy-related protein 11 "; GO:0006508 NbS00009893g0002.1 protein AED:0.49 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|255574990|ref|XP_002528401.1| (e_value=3e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G30790.1 (e_value=3e-18) | Symbols: | INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). | chr4:14993383-14997785 REVERSE LENGTH=1148;; (*ITAG) Solyc07g005970.2.1 (e_value=2e-55) genomic_reference:SL2.40ch07 gene_region:808577-817510 transcript_region:SL2.40ch07:808577..817510+ go_terms:GO:0006508 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019460 Autophagy-related protein 11 "; GO:0006508 NbS00001980g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|574; (*GB) gi|297736565|emb|CBI25436.3| (e_value=3e-174) unnamed protein product [Vitis vinifera];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=5e-113) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=1e-162) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc06g051010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:30593637-30595409 transcript_region:SL2.40ch06:30593637..30595409- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00001980g0014.1 protein AED:0.08 eAED:0.08 QI:188|1|1|1|0.85|0.87|8|21|633; (*GB) gi|225448534|ref|XP_002273466.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT23 [Vitis vinifera];; (*SWP) sp|Q9LYN3|PMTM_ARATH (e_value=0.0) Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1;; (*TAIR) AT3G56080.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20810526-20812988 REVERSE LENGTH=610;; (*ITAG) Solyc06g051000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30589869-30593046 transcript_region:SL2.40ch06:30589869..30593046+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00001980g0015.1 protein AED:0.51 eAED:0.51 QI:0|0|0.33|1|0.5|0.66|3|0|68 NbS00001980g0214.1 protein AED:0.23 eAED:0.44 QI:0|0|0|1|0.5|0|3|0|230 NbS00001980g0216.1 protein AED:0.74 eAED:0.83 QI:0|0|0|0.5|0|0.5|2|0|100 NbS00001980g0213.1 protein AED:0.19 eAED:0.19 QI:139|0.81|0.91|0.91|0.90|0.91|12|411|516 NbS00020002g0005.1 protein AED:0.08 eAED:0.08 QI:410|0.78|0.8|0.93|0.92|0.86|15|205|1460; (*GB) gi|356499544|ref|XP_003518599.1| (e_value=0.0) PREDICTED: ABC transporter B family member 4-like [Glycine max];; (*SWP) sp|Q9M1Q9|AB21B_ARATH (e_value=0.0) ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2;; (*TAIR) AT3G62150.1 (e_value=0.0) | Symbols: PGP21 | P-glycoprotein 21 | chr3:23008755-23013579 REVERSE LENGTH=1296;; (*ITAG) Solyc06g009290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3249411-3257702 transcript_region:SL2.40ch06:3249411..3257702- go_terms:GO:0010329,GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329,GO:0008559 NbS00002391g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|0.5|0|0|2|93|90; (*GB) gi|297738644|emb|CBI27889.3| (e_value=5e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|C4B8C4|EPFL3_ARATH (e_value=3e-16) EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=3 SV=1;; (*TAIR) AT3G13898.1 (e_value=2e-17) | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). | chr3:4584011-4584334 FORWARD LENGTH=107;; (*ITAG) Solyc03g121790.2.1 (e_value=7e-22) genomic_reference:SL2.40ch03 gene_region:63898644-63899251 transcript_region:SL2.40ch03:63898644..63899251+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 3 (AHRD V1 ***- EPFL3_ARATH)"; NbS00002391g0108.1 protein AED:0.25 eAED:0.25 QI:219|1|0.66|1|0.5|0.66|3|0|157 NbS00002391g0109.1 protein AED:0.26 eAED:0.26 QI:1497|1|0.75|1|1|1|4|410|110 NbS00004556g0005.1 protein AED:0.20 eAED:0.25 QI:68|0|0|0.66|0.5|0|3|0|263; (*ITAG) Solyc11g039450.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23726518-23727177 transcript_region:SL2.40ch11:23726518..23727177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021617g0105.1 protein AED:0.29 eAED:0.29 QI:0|0|0.5|1|0|0|2|229|99 NbS00021617g0106.1 protein AED:0.11 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.33|3|0|139 NbC25961541g0004.1 protein AED:0.13 eAED:0.18 QI:72|1|0.5|1|0.33|0.5|4|0|271; (*GB) gi|357518877|ref|XP_003629727.1| (e_value=5e-147) hypothetical protein MTR_8g085850 [Medicago truncatula];; (*TAIR) AT4G38500.1 (e_value=4e-137) | Symbols: | Protein of unknown function (DUF616) | chr4:18008418-18010693 FORWARD LENGTH=499;; (*ITAG) Solyc01g111770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89707745-89712319 transcript_region:SL2.40ch01:89707745..89712319- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00011514g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|240; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=6e-134) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=2e-135) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=1e-128) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=2e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00012518g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.71|0.75|1|0.85|0.87|8|0|592; (*GB) gi|16215471|emb|CAC82999.1| (e_value=0.0) calcium-dependent protein kinase 3 [Nicotiana tabacum];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=0.0) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=0.0) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc11g006370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1080169-1085490 transcript_region:SL2.40ch11:1080169..1085490+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q93YF3_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00036883g0003.1 protein AED:0.12 eAED:0.12 QI:518|0.66|0.75|1|1|1|4|347|381; (*GB) gi|224069424|ref|XP_002326350.1| (e_value=4e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96PX1|RN157_HUMAN (e_value=6e-33) RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3;; (*TAIR) AT3G09770.1 (e_value=3e-122) | Symbols: | RING/U-box superfamily protein | chr3:2996402-2997835 REVERSE LENGTH=388;; (*ITAG) Solyc09g007700.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:1244231-1249357 transcript_region:SL2.40ch09:1244231..1249357- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *-*- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008093g0014.1 protein AED:0.11 eAED:0.11 QI:33|1|1|1|1|1|2|85|151; (*GB) gi|197725474|gb|ACH72969.1| (e_value=1e-53) major latex-like protein [Panax ginseng];; (*SWP) sp|Q941R6|MLP31_ARATH (e_value=2e-45) MLP-like protein 31 OS=Arabidopsis thaliana GN=MLP31 PE=1 SV=2;; (*TAIR) AT1G70830.3 (e_value=2e-46) | Symbols: MLP28 | MLP-like protein 28 | chr1:26710203-26711395 REVERSE LENGTH=201;; (*ITAG) Solyc09g005500.2.1 (e_value=1e-82) genomic_reference:SL2.40ch09 gene_region:339412-340474 transcript_region:SL2.40ch09:339412..340474+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00008093g0019.1 protein AED:0.02 eAED:0.02 QI:81|0.85|0.87|1|0.85|1|8|12|475; (*GB) gi|224069890|ref|XP_002303073.1| (e_value=1e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=1e-82) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=9e-84) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc09g057710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45826062-45828447 transcript_region:SL2.40ch09:45826062..45828447- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00008093g0015.1 protein AED:0.32 eAED:0.34 QI:0|0.6|0.33|1|0.4|0.5|6|0|703; (*GB) gi|147856582|emb|CAN82493.1| (e_value=0.0) hypothetical protein VITISV_017203 [Vitis vinifera];; (*SWP) sp|Q9SRT3|CSLC6_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 6 OS=Arabidopsis thaliana GN=CSLC6 PE=1 SV=1;; (*TAIR) AT3G07330.1 (e_value=0.0) | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellulose-synthase-like C6 | chr3:2336121-2338942 REVERSE LENGTH=682;; (*ITAG) Solyc09g057640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45660053-45673808 transcript_region:SL2.40ch09:45660053..45673808+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00009588g0007.1 protein AED:0.23 eAED:0.26 QI:0|0.75|0.6|1|0.5|0.6|5|277|468; (*GB) gi|356504432|ref|XP_003521000.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800227 [Glycine max];; (*TAIR) AT3G49050.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18181498-18183613 FORWARD LENGTH=477;; (*ITAG) Solyc01g094570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77753001-77757781 transcript_region:SL2.40ch01:77753001..77757781+ go_terms:GO:0005516 functional_description:"Calmodulin-binding heat-shock-like protein (AHRD V1 **-* Q9SMU2_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00009588g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.71|1|0.83|0.71|7|434|458; (*GB) gi|225454224|ref|XP_002273843.1| (e_value=0.0) PREDICTED: beta-amylase 7-like [Vitis vinifera];; (*SWP) sp|O80831|BAM7_ARATH (e_value=0.0) Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2;; (*TAIR) AT2G45880.1 (e_value=0.0) | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878674-18881824 REVERSE LENGTH=691;; (*ITAG) Solyc01g094580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77758296-77767159 transcript_region:SL2.40ch01:77758296..77767159- go_terms:GO:0016161 functional_description:"Beta-amylase 9 (AHRD V1 **** D7M5N4_ARALY); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00045384g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.4|1|0.5|0.6|5|0|310; (*GB) gi|225449232|ref|XP_002279987.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Vitis vinifera];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00045384g0008.1 protein AED:0.36 eAED:0.39 QI:18|1|0.75|1|0.66|0.75|4|0|138; (*GB) gi|5932420|gb|AAD56951.1|AF184886_1 (e_value=3e-91) LIM domain protein WLIM2 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=6e-39) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G55770.5 (e_value=7e-78) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:20703799-20705115 FORWARD LENGTH=199;; (*ITAG) Solyc05g052780.2.1 (e_value=2e-94) genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ go_terms:GO:0005246,GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0005246,GO:0042802 NbS00057014g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|172; (*GB) gi|356555416|ref|XP_003546028.1| (e_value=2e-40) PREDICTED: olee1-like protein-like [Glycine max];; (*SWP) sp|O49813|OLEE1_BETPN (e_value=8e-41) Olee1-like protein OS=Betula pendula PE=2 SV=1;; (*TAIR) AT4G18596.1 (e_value=5e-40) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr4:10239114-10239728 FORWARD LENGTH=172;; (*ITAG) Solyc02g076860.2.1 (e_value=5e-93) genomic_reference:SL2.40ch02 gene_region:36558814-36560643 transcript_region:SL2.40ch02:36558814..36560643- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00018349g0008.1 protein AED:0.76 eAED:0.82 QI:0|0|0|0.66|1|1|3|0|62 NbS00029112g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|1|3|0|154; (*GB) gi|225440474|ref|XP_002272505.1| (e_value=8e-72) PREDICTED: CASP-like protein At3g53850 [Vitis vinifera];; (*SWP) sp|Q945M8|CSPLI_ARATH (e_value=2e-64) CASP-like protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1;; (*TAIR) AT3G53850.1 (e_value=2e-65) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:19948262-19948994 REVERSE LENGTH=154;; (*ITAG) Solyc09g011230.2.1 (e_value=2e-88) genomic_reference:SL2.40ch09 gene_region:4562138-4566157 transcript_region:SL2.40ch09:4562138..4566157- functional_description:"UPF0497 membrane protein At3g53850 (AHRD V1 ***- U497L_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00029112g0003.1 protein AED:0.03 eAED:0.03 QI:140|1|1|1|0.75|0.8|5|268|361; (*GB) gi|224087493|ref|XP_002308180.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O22287|GMPP1_ARATH (e_value=0.0) Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1;; (*TAIR) AT2G39770.2 (e_value=0.0) | Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361;; (*ITAG) Solyc09g011220.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4560214-4562162 transcript_region:SL2.40ch09:4560214..4562162+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 3"; GO:0004475,GO:0051015 NbS00046543g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.33|0.75|4|0|297; (*GB) gi|225458247|ref|XP_002281308.1| (e_value=1e-132) PREDICTED: putative pectinesterase 11 [Vitis vinifera];; (*SWP) sp|Q9SIJ9|PME11_ARATH (e_value=1e-110) Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1;; (*TAIR) AT2G21610.1 (e_value=1e-111) | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:9245161-9247025 REVERSE LENGTH=352;; (*ITAG) Solyc04g080530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62264977-62267353 transcript_region:SL2.40ch04:62264977..62267353+ go_terms:GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 **** D7LBW7_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00026601g0001.1 protein AED:0.15 eAED:0.15 QI:2502|0.96|0.87|1|0.63|0.67|31|436|805; (*GB) gi|125535486|gb|EAY81974.1| (e_value=0.0) hypothetical protein OsI_37152 [Oryza sativa Indica Group];; (*SWP) sp|Q0WNJ6|CLAH1_ARATH (e_value=0.0) Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1;; (*TAIR) AT3G11130.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705;; (*ITAG) Solyc03g096000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51242345-51256561 transcript_region:SL2.40ch03:51242345..51256561- go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00002397g0005.1 protein AED:0.15 eAED:0.15 QI:71|1|0.91|1|0.72|0.75|12|0|1142; (*GB) gi|225432963|ref|XP_002284428.1| (e_value=0.0) PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera];; (*SWP) sp|Q8RY18|Y5436_ARATH (e_value=0.0) MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1;; (*TAIR) AT1G04300.1 (e_value=0.0) | Symbols: | TRAF-like superfamily protein | chr1:1148818-1153895 REVERSE LENGTH=1074;; (*ITAG) Solyc03g005430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:303777-317879 transcript_region:SL2.40ch03:303777..317879- functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00018258g0010.1 protein AED:0.30 eAED:0.32 QI:0|0.91|0.84|1|1|1|13|0|429; (*GB) gi|255638717|gb|ACU19663.1| (e_value=0.0) unknown [Glycine max];; (*SWP) sp|O04153|CALR3_ARATH (e_value=0.0) Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2;; (*TAIR) AT1G08450.1 (e_value=0.0) | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424;; (*ITAG) Solyc05g056230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64732387-64738654 transcript_region:SL2.40ch05:64732387..64738654- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00018258g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|76573351|gb|ABA46780.1| (e_value=2e-29) unknown [Solanum tuberosum];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=2e-21) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=2e-22) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc05g056240.2.1 (e_value=2e-37) genomic_reference:SL2.40ch05 gene_region:64745523-64748732 transcript_region:SL2.40ch05:64745523..64748732+ go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00018258g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|388458919|gb|AFK31314.1| (e_value=2e-32) acyl carrier protein [Camellia oleifera];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=8e-31) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=6e-32) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc05g056240.2.1 (e_value=3e-34) genomic_reference:SL2.40ch05 gene_region:64745523-64748732 transcript_region:SL2.40ch05:64745523..64748732+ go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00058358g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|0|0|2|0|131 NbS00055282g0007.1 protein AED:0.10 eAED:0.10 QI:43|0.8|0.83|1|1|1|6|769|277; (*GB) gi|356525475|ref|XP_003531350.1| (e_value=3e-145) PREDICTED: UDP-N-acetylglucosamine transporter-like [Glycine max];; (*SWP) sp|Q8LES0|CSTR5_ARATH (e_value=4e-129) CMP-sialic acid transporter 5 OS=Arabidopsis thaliana GN=At5g65000 PE=2 SV=1;; (*TAIR) AT5G65000.1 (e_value=3e-130) | Symbols: | Nucleotide-sugar transporter family protein | chr5:25965123-25967307 REVERSE LENGTH=325;; (*ITAG) Solyc05g051590.2.1 (e_value=1e-163) genomic_reference:SL2.40ch05 gene_region:61102085-61108208 transcript_region:SL2.40ch05:61102085..61108208- go_terms:GO:0005459 functional_description:"UDP-galactose transporter (AHRD V1 **** D0NZ12_PHYIN); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005459 NbS00055282g0005.1 protein AED:0.95 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|128 NbS00055282g0010.1 protein AED:0.11 eAED:0.12 QI:108|0.57|0.5|1|0.57|0.62|8|414|567; (*GB) gi|255580882|ref|XP_002531260.1| (e_value=0.0) Root phototropism protein, putative [Ricinus communis];; (*SWP) sp|Q9LFU0|DOT3_ARATH (e_value=2e-141) Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1;; (*TAIR) AT5G10250.1 (e_value=2e-142) | Symbols: DOT3 | Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607;; (*ITAG) Solyc05g051580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61095883-61101104 transcript_region:SL2.40ch05:61095883..61101104+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00010595g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225426477|ref|XP_002277018.1| (e_value=6e-40) PREDICTED: uncharacterized protein LOC100254752 [Vitis vinifera];; (*TAIR) AT1G63310.1 (e_value=2e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:23486580-23487044 REVERSE LENGTH=154;; (*ITAG) Solyc01g066860.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:67453578-67454383 transcript_region:SL2.40ch01:67453578..67454383- functional_description:"Unknown Protein (AHRD V1)"; NbS00010595g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.85|1|0|0.14|7|643|173; (*GB) gi|225426479|ref|XP_002270961.1| (e_value=1e-54) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=5e-15) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G01440.1 (e_value=8e-41) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:596531-598512 FORWARD LENGTH=365;; (*ITAG) Solyc12g099580.1.1 (e_value=4e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65025300-65027399 transcript_region:SL2.40ch12:65025300..65027399+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LP41_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00010595g0014.1 protein AED:0.26 eAED:0.26 QI:6|0.66|0.5|1|1|1|4|0|509; (*GB) gi|297736872|emb|CBI26073.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUS8|P2C40_ARATH (e_value=1e-155) Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1;; (*TAIR) AT3G16560.1 (e_value=9e-157) | Symbols: | Protein phosphatase 2C family protein | chr3:5636051-5637702 REVERSE LENGTH=493;; (*ITAG) Solyc12g099600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65030399-65034813 transcript_region:SL2.40ch12:65030399..65034813+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 ***- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00010595g0010.1 protein AED:0.34 eAED:0.41 QI:919|0|0.33|1|0|0.66|3|0|111; (*GB) gi|118483904|gb|ABK93842.1| (e_value=7e-23) unknown [Populus trichocarpa];; (*TAIR) AT4G15802.1 (e_value=2e-19) | Symbols: HSBP, AtHSBP | heat shock factor binding protein | chr4:8986864-8988339 REVERSE LENGTH=86; NbS00051985g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|151; (*ITAG) Solyc01g098730.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:80929022-80929971 transcript_region:SL2.40ch01:80929022..80929971- functional_description:"Unknown Protein (AHRD V1)"; NbS00051985g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|435; (*GB) gi|357441591|ref|XP_003591073.1| (e_value=2e-87) RING finger family protein [Medicago truncatula];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=8e-48) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=6e-49) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=8e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00016571g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|187; (*GB) gi|356555208|ref|XP_003545927.1| (e_value=2e-64) PREDICTED: putative Peroxidase 48-like [Glycine max];; (*SWP) sp|O81755|PER48_ARATH (e_value=4e-31) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=2e-28) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc02g085930.2.1 (e_value=3e-93) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00016571g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.9|0.72|0.90|0.8|0.81|11|0|359; (*GB) gi|224135287|ref|XP_002327610.1| (e_value=6e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTD8|Y5279_ARATH (e_value=1e-131) DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2;; (*TAIR) AT5G52790.1 (e_value=1e-132) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr5:21391740-21394327 REVERSE LENGTH=500;; (*ITAG) Solyc03g007570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2124725-2127909 transcript_region:SL2.40ch03:2124725..2127909- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_SALTY); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00033763g0006.1 protein AED:0.24 eAED:0.36 QI:0|0.5|0.42|1|0|0.28|7|0|576; (*GB) gi|255560307|ref|XP_002521170.1| (e_value=2e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G30240.2 (e_value=3e-45) | Symbols: | unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=827;; (*ITAG) Solyc11g007010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1497059-1505072 transcript_region:SL2.40ch11:1497059..1505072+ go_terms:GO:0005488 functional_description:"Proline-, glutamic acid- and leucine-rich protein 1 (AHRD V1 *--- PELP1_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00033763g0007.1 protein AED:0.53 eAED:0.59 QI:0|0|0|0.66|0|0|6|0|137; (*GB) gi|255560307|ref|XP_002521170.1| (e_value=3e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G30240.1 (e_value=3e-22) | Symbols: | FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 165 Blast hits to 164 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=825;; (*ITAG) Solyc11g007010.1.1 (e_value=9e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1497059-1505072 transcript_region:SL2.40ch11:1497059..1505072+ go_terms:GO:0005488 functional_description:"Proline-, glutamic acid- and leucine-rich protein 1 (AHRD V1 *--- PELP1_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00013531g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.85|1|0.83|0.85|7|477|389; (*GB) gi|3283996|gb|AAC25423.1| (e_value=3e-134) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|O49717|CDPKF_ARATH (e_value=3e-121) Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1;; (*TAIR) AT4G21940.1 (e_value=2e-122) | Symbols: CPK15 | calcium-dependent protein kinase 15 | chr4:11640847-11643387 FORWARD LENGTH=554;; (*ITAG) Solyc03g031670.2.1 (e_value=5e-134) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00020557g0008.1 protein AED:0.25 eAED:0.25 QI:327|0.85|0.75|1|1|1|8|609|452; (*GB) gi|297743614|emb|CBI36481.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0V7T5|Y1864_ARATH (e_value=5e-114) Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1;; (*TAIR) AT2G25220.2 (e_value=4e-132) | Symbols: | Protein kinase superfamily protein | chr2:10742918-10745540 REVERSE LENGTH=437;; (*ITAG) Solyc03g117180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60444590-60448232 transcript_region:SL2.40ch03:60444590..60448232- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020557g0002.1 protein AED:0.42 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|224072685|ref|XP_002303834.1| (e_value=4e-43) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g117170.1.1 (e_value=1e-124) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60442651-60443334 transcript_region:SL2.40ch03:60442651..60443334- functional_description:"Unknown Protein (AHRD V1)"; NbS00020557g0009.1 protein AED:0.65 eAED:0.74 QI:27|0.5|0.33|1|0|0|3|0|115; (*GB) gi|255565079|ref|XP_002523532.1| (e_value=9e-19) Ribonuclease III, putative [Ricinus communis];; (*SWP) sp|Q9M8N2|RTL1_ARATH (e_value=2e-17) Ribonuclease 3-like protein 1 OS=Arabidopsis thaliana GN=RTL1 PE=2 SV=1;; (*TAIR) AT1G80650.1 (e_value=1e-18) | Symbols: RTL1 | RNAse THREE-like protein 1 | chr1:30314609-30315600 FORWARD LENGTH=198;; (*ITAG) Solyc07g005030.2.1 (e_value=1e-19) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00020557g0013.1 protein AED:0.19 eAED:0.19 QI:0|0.46|0.57|0.92|0.76|0.85|14|0|748; (*GB) gi|255572779|ref|XP_002527322.1| (e_value=0.0) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q03194|PMA4_NICPL (e_value=0.0) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT1G80660.1 (e_value=0.0) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc03g117150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60436921-60440907 transcript_region:SL2.40ch03:60436921..60440907+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00049157g0005.1 protein AED:0.51 eAED:0.53 QI:0|0|0|0.66|0|0|3|0|127; (*GB) gi|90111010|sp|Q33C48.1|RPOC2_NICTO (e_value=5e-13) RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; (*SWP) sp|Q33C48|RPOC2_NICTO (e_value=1e-14) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1; NbS00033056g0002.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|583; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=9e-113) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=3e-66) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=1e-109) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00033056g0006.1 protein AED:0.09 eAED:0.15 QI:0|0.4|0.33|1|0.6|0.66|6|0|377; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=0.0) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=9e-117) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00038683g0006.1 protein AED:0.22 eAED:0.22 QI:141|0.91|0.95|1|0.69|0.79|24|392|765; (*GB) gi|225429690|ref|XP_002280069.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Vitis vinifera];; (*SWP) sp|Q42371|ERECT_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1;; (*TAIR) AT2G26330.1 (e_value=0.0) | Symbols: ER, QRP1 | Leucine-rich receptor-like protein kinase family protein | chr2:11208367-11213895 REVERSE LENGTH=976;; (*ITAG) Solyc08g061560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46197158-46204157 transcript_region:SL2.40ch08:46197158..46204157- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00020966g0008.1 protein AED:0.17 eAED:0.17 QI:1603|0.58|0.53|1|0.33|0.38|13|189|662; (*GB) gi|225460372|ref|XP_002264425.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252816 [Vitis vinifera];; (*TAIR) AT4G09150.1 (e_value=9e-125) | Symbols: | T-complex protein 11 | chr4:5828753-5833475 FORWARD LENGTH=1097;; (*ITAG) Solyc06g064910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36856870-36869076 transcript_region:SL2.40ch06:36856870..36869076- functional_description:"T-complex protein 11 (AHRD V1 ***- D7KML1_ARALY); contains Interpro domain(s) IPR008862 T-complex 11 "; NbS00011377g0011.1 protein AED:0.28 eAED:0.32 QI:0|0.63|0.58|0.91|0.63|0.66|12|0|512; (*GB) gi|302141996|emb|CBI19199.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=6e-80) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G22460.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00011377g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.33|0|0.5|1|1|4|0|168; (*GB) gi|356552918|ref|XP_003544809.1| (e_value=1e-22) PREDICTED: cytochrome c oxidase subunit 6b-1-like [Glycine max];; (*SWP) sp|Q9S7L9|CX6B1_ARATH (e_value=6e-19) Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=2 SV=1;; (*TAIR) AT1G22450.1 (e_value=5e-20) | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B | chr1:7925447-7926918 FORWARD LENGTH=191;; (*ITAG) Solyc12g057120.1.1 (e_value=2e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48552653-48555057 transcript_region:SL2.40ch12:48552653..48555057+ go_terms:GO:0005739 functional_description:"Subunit VIb of cytochrome c oxidase (AHRD V1 *-*- C4R7U6_PICPG); contains Interpro domain(s) IPR003213 Cytochrome c oxidase, subunit VIb "; GO:0005739 NbS00019641g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|721; (*GB) gi|356557579|ref|XP_003547093.1| (e_value=5e-46) PREDICTED: uncharacterized protein LOC100778926 [Glycine max];; (*TAIR) AT5G64360.4 (e_value=5e-42) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=464;; (*ITAG) Solyc01g105780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85586719-85589342 transcript_region:SL2.40ch01:85586719..85589342- go_terms:GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00019641g0013.1 protein AED:0.16 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|200; (*GB) gi|297739339|emb|CBI29329.3| (e_value=6e-20) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g038100.1.1 (e_value=4e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:34157356-34158093 transcript_region:SL2.40ch12:34157356..34158093+ functional_description:"Polyprotein (AHRD V1 *-*- Q94HW2_ARATH)"; NbS00019641g0006.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|402 NbS00019641g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0.5|1|0|0.5|2|427|241; (*ITAG) Solyc01g105770.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:85579929-85581435 transcript_region:SL2.40ch01:85579929..85581435- functional_description:"Unknown Protein (AHRD V1)"; NbS00019641g0010.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|529; (*GB) gi|388492340|gb|AFK34236.1| (e_value=2e-14) unknown [Medicago truncatula];; (*TAIR) AT5G09530.1 (e_value=5e-13) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc01g105770.2.1 (e_value=9e-30) genomic_reference:SL2.40ch01 gene_region:85579929-85581435 transcript_region:SL2.40ch01:85579929..85581435- functional_description:"Unknown Protein (AHRD V1)"; NbS00055934g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.93|0.87|1|0.8|0.87|16|164|532; (*GB) gi|255560896|ref|XP_002521461.1| (e_value=0.0) Cell division cycle protein cdt2, putative [Ricinus communis];; (*SWP) sp|Q3TLR7|DTL_MOUSE (e_value=2e-57) Denticleless protein homolog OS=Mus musculus GN=Dtl PE=1 SV=2;; (*TAIR) AT3G27640.1 (e_value=1e-163) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535;; (*ITAG) Solyc02g086470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43724456-43729361 transcript_region:SL2.40ch02:43724456..43729361+ go_terms:GO:0030674,GO:0032403 functional_description:"WD repeat protein (AHRD V1 **-- B8MBM8_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030674,GO:0032403 NbS00013106g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|583; (*GB) gi|215398158|gb|ACJ65328.1| (e_value=0.0) scarecrow-like protein [Capsicum annuum];; (*SWP) sp|Q69VG1|CIGR1_ORYSJ (e_value=0.0) Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=5e-171) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g063940.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63488513-63490264 transcript_region:SL2.40ch07:63488513..63490264- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00001043g0002.1 protein AED:0.23 eAED:0.46 QI:209|0|0.5|1|1|1|2|0|77 NbS00024876g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|3|0|265; (*GB) gi|255588477|ref|XP_002534615.1| (e_value=3e-89) Metalloendoproteinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|P29136|MEP1_SOYBN (e_value=2e-42) Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT2G45040.1 (e_value=2e-75) | Symbols: | Matrixin family protein | chr2:18577693-18578721 FORWARD LENGTH=342;; (*ITAG) Solyc08g078550.1.1 (e_value=4e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59511837-59512907 transcript_region:SL2.40ch08:59511837..59512907+ go_terms:GO:0004222 functional_description:"Matrix metalloproteinase (AHRD V1 **-- D7LBU9_ARALY); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin "; GO:0004222 NbS00026270g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225454190|ref|XP_002272636.1| (e_value=1e-50) PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera];; (*TAIR) AT1G01730.1 (e_value=2e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:271002-271872 FORWARD LENGTH=224;; (*ITAG) Solyc05g049880.2.1 (e_value=4e-86) genomic_reference:SL2.40ch05 gene_region:58766954-58775362 transcript_region:SL2.40ch05:58766954..58775362- functional_description:"Unknown Protein (AHRD V1)"; NbS00029721g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|268; (*GB) gi|296088355|emb|CBI36800.3| (e_value=3e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ32|FB60_ARATH (e_value=3e-100) F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1;; (*TAIR) AT1G55000.3 (e_value=2e-101) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr1:20514762-20516166 FORWARD LENGTH=221;; (*ITAG) Solyc01g099130.2.1 (e_value=2e-167) genomic_reference:SL2.40ch01 gene_region:81207115-81209977 transcript_region:SL2.40ch01:81207115..81209977+ go_terms:GO:0016998 functional_description:"LysM domain containing protein (AHRD V1 ***- B6TTS5_MAIZE); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00029721g0007.1 protein AED:0.20 eAED:0.20 QI:149|1|1|1|0|0|2|230|65; (*GB) gi|224102045|ref|XP_002312524.1| (e_value=6e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05360.1 (e_value=4e-19) | Symbols: | BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G14950.1); Has 332 Blast hits to 326 proteins in 115 species: Archae - 0; Bacteria - 11; Metazoa - 174; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | chr1:1564816-1567278 FORWARD LENGTH=416;; (*ITAG) Solyc01g099140.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:81210418-81217602 transcript_region:SL2.40ch01:81210418..81217602- functional_description:"Transmembrane protein 49 (AHRD V1 ***- B6TDW5_MAIZE)"; NbS00027609g0007.1 protein AED:0.23 eAED:0.24 QI:0|0.88|0.84|1|0.94|0.84|19|0|601; (*GB) gi|316980592|dbj|BAJ51944.1| (e_value=0.0) NADP-dependent malic enzyme [Nicotiana benthamiana];; (*SWP) sp|P51615|MAOX_VITVI (e_value=0.0) NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1;; (*TAIR) AT1G79750.1 (e_value=0.0) | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646;; (*ITAG) Solyc08g066360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52156549-52163406 transcript_region:SL2.40ch08:52156549..52163406- go_terms:GO:0004473 functional_description:"Malic enzyme (AHRD V1 ***- B9RKI6_RICCO); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00058858g0004.1 protein AED:0.01 eAED:0.01 QI:717|1|1|1|1|1|2|302|238; (*GB) gi|224105897|ref|XP_002313971.1| (e_value=5e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT1G07090.1 (e_value=9e-85) | Symbols: LSH6 | Protein of unknown function (DUF640) | chr1:2174202-2174792 REVERSE LENGTH=196;; (*ITAG) Solyc06g082210.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44417875-44418543 transcript_region:SL2.40ch06:44417875..44418543+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00000739g0010.1 protein AED:0.06 eAED:0.06 QI:112|0.75|0.4|1|0.25|0.2|5|295|22 NbS00000739g0011.1 protein AED:0.10 eAED:0.10 QI:33|0.66|0|1|0.66|0.5|4|0|87; (*GB) gi|356573857|ref|XP_003555072.1| (e_value=3e-47) PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max];; (*SWP) sp|O14233|RNA14_SCHPO (e_value=2e-16) mRNA 3'-end-processing protein rna14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rna14 PE=2 SV=1;; (*TAIR) AT1G17760.1 (e_value=1e-44) | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:6110208-6116271 REVERSE LENGTH=734;; (*ITAG) Solyc10g050540.1.1 (e_value=1e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45449878-45482671 transcript_region:SL2.40ch10:45449878..45482671- go_terms:GO:0005515,GO:0003729 functional_description:"mRNA 3&apos-end-processing protein rna14 (AHRD V1 **-* B6K4N2_SCHJY); contains Interpro domain(s) IPR008847 Suppressor of forked "; GO:0005515,GO:0003729 NbS00000739g0009.1 protein AED:0.25 eAED:0.26 QI:6|0.85|0.8|1|0.92|0.86|15|529|539; (*GB) gi|225445638|ref|XP_002265193.1| (e_value=0.0) PREDICTED: cleavage stimulation factor subunit 3 [Vitis vinifera];; (*SWP) sp|Q99LI7|CSTF3_MOUSE (e_value=6e-67) Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1;; (*TAIR) AT1G17760.1 (e_value=0.0) | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:6110208-6116271 REVERSE LENGTH=734;; (*ITAG) Solyc10g050540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45449878-45482671 transcript_region:SL2.40ch10:45449878..45482671- go_terms:GO:0005515,GO:0003729 functional_description:"mRNA 3&apos-end-processing protein rna14 (AHRD V1 **-* B6K4N2_SCHJY); contains Interpro domain(s) IPR008847 Suppressor of forked "; GO:0005515,GO:0003729 NbS00051253g0012.1 protein AED:0.17 eAED:0.17 QI:332|1|1|1|0.87|0.77|9|305|538; (*GB) gi|356496848|ref|XP_003517277.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Glycine max];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G66920.1 (e_value=0.0) | Symbols: sks17 | SKU5 similar 17 | chr5:26722963-26725370 FORWARD LENGTH=546;; (*ITAG) Solyc02g065170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30910851-30914781 transcript_region:SL2.40ch02:30910851..30914781+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00051253g0013.1 protein AED:0.39 eAED:0.45 QI:32|0.83|0.57|1|0.16|0.28|7|0|206; (*GB) gi|363807908|ref|NP_001242449.1| (e_value=6e-97) uncharacterized protein LOC100811916 [Glycine max];; (*TAIR) AT5G66930.2 (e_value=3e-88) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr5:26725997-26727549 FORWARD LENGTH=215;; (*ITAG) Solyc02g065180.2.1 (e_value=1e-116) genomic_reference:SL2.40ch02 gene_region:30918048-30924916 transcript_region:SL2.40ch02:30918048..30924916+ functional_description:"Genomic DNA chromosome 5 P1 clone MUD21 (AHRD V1 **-- Q9FKY8_ARATH); contains Interpro domain(s) IPR012445 Protein of unknown function DUF1649 "; NbS00051253g0007.1 protein AED:0.27 eAED:0.32 QI:396|0.5|0.66|1|0.5|0.33|3|506|143; (*GB) gi|269838629|gb|ACZ48680.1| (e_value=1e-47) geraniol 10-hydroxylase [Swertia mussotii];; (*SWP) sp|O64635|C76C4_ARATH (e_value=2e-32) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=1e-33) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g065230.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:30980986-30982721 transcript_region:SL2.40ch02:30980986..30982721+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010845g0001.1 protein AED:0.17 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|225431980|ref|XP_002278781.1| (e_value=2e-99) PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Vitis vinifera];; (*SWP) sp|Q9ZVX1|UBC23_ARATH (e_value=1e-75) Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1;; (*TAIR) AT2G16920.1 (e_value=7e-77) | Symbols: UBC23, PFU2 | ubiquitin-conjugating enzyme 23 | chr2:7334559-7338827 REVERSE LENGTH=1102;; (*ITAG) Solyc07g053960.2.1 (e_value=2e-78) genomic_reference:SL2.40ch07 gene_region:59681394-59685078 transcript_region:SL2.40ch07:59681394..59685078+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00016157g0007.1 protein AED:0.19 eAED:0.19 QI:196|0.87|0.77|0.88|0.87|1|9|0|302; (*GB) gi|359481725|ref|XP_003632664.1| (e_value=4e-90) PREDICTED: probable proteasome inhibitor isoform 2 [Vitis vinifera];; (*SWP) sp|Q9M330|PSMF1_ARATH (e_value=7e-78) Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1;; (*TAIR) AT3G53970.1 (e_value=5e-79) | Symbols: | proteasome inhibitor-related | chr3:19985208-19987132 FORWARD LENGTH=302;; (*ITAG) Solyc09g011450.2.1 (e_value=2e-136) genomic_reference:SL2.40ch09 gene_region:4762129-4769484 transcript_region:SL2.40ch09:4762129..4769484+ functional_description:"cDNA clone J075093E01 full insert sequence (AHRD V1 ***- B7F961_ORYSJ); contains Interpro domain(s) IPR013886 PI31 proteasome regulator "; NbS00007387g0001.1 protein AED:0.13 eAED:0.13 QI:149|1|1|1|1|1|4|682|260; (*GB) gi|224144230|ref|XP_002325227.1| (e_value=3e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9W0|AB17I_ARATH (e_value=8e-130) ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1;; (*TAIR) AT1G67940.1 (e_value=6e-131) | Symbols: ATNAP3, AtSTAR1, NAP3 | non-intrinsic ABC protein 3 | chr1:25477805-25478667 FORWARD LENGTH=263;; (*ITAG) Solyc03g117810.2.1 (e_value=1e-169) genomic_reference:SL2.40ch03 gene_region:60887618-60890024 transcript_region:SL2.40ch03:60887618..60890024- go_terms:GO:0015415 functional_description:"Phosphate import ATP-binding protein pstB 1 (AHRD V1 **** B6UHM7_MAIZE); contains Interpro domain(s) IPR005670 Phosphate transport system permease protein 1 "; GO:0015415 NbS00007387g0016.1 protein AED:0.15 eAED:0.15 QI:395|0.90|0.90|1|0.71|0.72|22|341|664; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=0.0) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=7e-108) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc03g117790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007387g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.55|0.4|1|0.55|0.5|10|431|510; (*GB) gi|225445728|ref|XP_002270904.1| (e_value=0.0) PREDICTED: protein WAX2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=0.0) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=0.0) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc03g117800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60883263-60887328 transcript_region:SL2.40ch03:60883263..60887328+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00029446g0007.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0.5|0.9|1|1|10|0|405; (*GB) gi|225439193|ref|XP_002269480.1| (e_value=0.0) PREDICTED: nucleolar MIF4G domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q3UFM5|NOM1_MOUSE (e_value=3e-43) Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=2 SV=2;; (*TAIR) AT5G17930.1 (e_value=0.0) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:5940131-5943952 REVERSE LENGTH=784;; (*ITAG) Solyc03g097280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53040555-53058473 transcript_region:SL2.40ch03:53040555..53058473+ go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor CWC22 homolog (AHRD V1 *--- CWC22_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515 NbS00028796g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.33|3|0|523; (*GB) gi|255545694|ref|XP_002513907.1| (e_value=0.0) carbohydrate transporter, putative [Ricinus communis];; (*TAIR) AT1G78130.1 (e_value=0.0) | Symbols: UNE2 | Major facilitator superfamily protein | chr1:29400171-29401814 FORWARD LENGTH=490;; (*ITAG) Solyc12g057010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48453419-48455730 transcript_region:SL2.40ch12:48453419..48455730+ go_terms:GO:0055085 functional_description:"Transporter major facilitator family (AHRD V1 **-- B5IUM5_9EURY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00028796g0002.1 protein AED:0.21 eAED:0.29 QI:67|1|0.5|1|0|0|2|0|292; (*GB) gi|147781938|emb|CAN67718.1| (e_value=2e-31) hypothetical protein VITISV_002357 [Vitis vinifera];; (*ITAG) Solyc04g073950.1.1 (e_value=5e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:57556744-57558138 transcript_region:SL2.40ch04:57556744..57558138+ functional_description:"VQ motif family protein expressed (AHRD V1 *-*- Q10KE8_ORYSJ); contains Interpro domain(s) IPR008889 VQ "; NbS00015284g0004.1 protein AED:0.33 eAED:0.33 QI:319|0.33|0.75|0.75|0.66|0.75|4|682|53 NbS00043355g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.6|1|1|1|5|0|471; (*GB) gi|29893064|emb|CAC83577.2| (e_value=0.0) vacuolar invertase [Nicotiana tabacum];; (*SWP) sp|P29000|INVA_SOLLC (e_value=0.0) Acid beta-fructofuranosidase OS=Solanum lycopersicum GN=TIV1 PE=2 SV=1;; (*TAIR) AT1G62660.1 (e_value=0.0) | Symbols: | Glycosyl hydrolases family 32 protein | chr1:23199949-23203515 FORWARD LENGTH=648;; (*ITAG) Solyc03g083910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47397595-47401871 transcript_region:SL2.40ch03:47397595..47401871- go_terms:GO:0004553 functional_description:"Acid beta-fructofuranosidase (AHRD V1 **-- Q575T1_WHEAT); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004553 NbS00017998g0005.1 protein AED:0.22 eAED:0.25 QI:0|1|0|1|0|0.5|2|0|397; (*GB) gi|225424663|ref|XP_002285541.1| (e_value=0.0) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*TAIR) AT1G12990.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392;; (*ITAG) Solyc05g013580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6883577-6886664 transcript_region:SL2.40ch05:6883577..6886664+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7KPE7_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00026905g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|697; (*GB) gi|206572097|gb|ACI13681.1| (e_value=0.0) putative auxin response factor ARF16 [Malus x domestica];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc09g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1332643-1335760 transcript_region:SL2.40ch09:1332643..1335760- go_terms:GO:0003700,GO:0035198 functional_description:"Auxin response factor 3 (AHRD V1 **** A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0035198 NbS00043198g0011.1 protein AED:0.12 eAED:0.12 QI:67|0.75|0.6|1|1|0.8|5|0|646; (*GB) gi|225444688|ref|XP_002277730.1| (e_value=3e-170) PREDICTED: uncharacterized protein LOC100247308 [Vitis vinifera];; (*TAIR) AT5G20680.3 (e_value=5e-162) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6998946-7001596 FORWARD LENGTH=551;; (*ITAG) Solyc12g009150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2461760-2464423 transcript_region:SL2.40ch12:2461760..2464423+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00043198g0009.1 protein AED:0.29 eAED:0.29 QI:10|1|1|1|0.88|0.8|10|362|246; (*GB) gi|12229948|sp|Q9XG77.1|PSA6_TOBAC (e_value=0.0) RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome subunit alpha-1;; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=0.0) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1;; (*TAIR) AT2G05840.1 (e_value=2e-170) | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234226-2236053 FORWARD LENGTH=246;; (*ITAG) Solyc12g009140.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2453127-2457231 transcript_region:SL2.40ch12:2453127..2457231- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- D2D307_GOSHI); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00043198g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|200; (*GB) gi|373938247|dbj|BAL46495.1| (e_value=8e-76) hypothetical protein [Diospyros kaki];; (*SWP) sp|Q9ZUF7|LOR6_ARATH (e_value=1e-62) Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1;; (*TAIR) AT2G05910.1 (e_value=8e-64) | Symbols: | Protein of unknown function (DUF567) | chr2:2258512-2259376 REVERSE LENGTH=191;; (*ITAG) Solyc12g009130.1.1 (e_value=3e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2448409-2450432 transcript_region:SL2.40ch12:2448409..2450432+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00060656g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|350536267|ref|NP_001233982.1| (e_value=3e-25) subtilisin-like protease precursor [Solanum lycopersicum];; (*TAIR) AT2G04160.1 (e_value=1e-13) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc02g072330.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36179426-36181612 transcript_region:SL2.40ch02:36179426..36181612- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00060656g0004.1 protein AED:0.15 eAED:0.21 QI:0|0|0|1|0|0|4|0|405; (*GB) gi|225426708|ref|XP_002275452.1| (e_value=2e-123) PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-59) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=2e-66) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc02g072330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36179426-36181612 transcript_region:SL2.40ch02:36179426..36181612- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00040519g0003.1 protein AED:0.00 eAED:0.00 QI:322|1|1|1|1|1|2|337|193; (*GB) gi|82623367|gb|ABB87098.1| (e_value=3e-91) hypothetical protein [Solanum tuberosum];; (*TAIR) AT2G27830.1 (e_value=2e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc11g066860.1.1 (e_value=1e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49742461-49743136 transcript_region:SL2.40ch11:49742461..49743136- functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 *--- Q0E1G8_ORYSJ)"; NbS00016712g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|0|0.33|3|0|164; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-25) hypothetical protein [Nicotiana tabacum]; NbS00003369g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.25|1|0.33|0.25|4|0|223; (*GB) gi|118485710|gb|ABK94705.1| (e_value=6e-58) unknown [Populus trichocarpa];; (*SWP) sp|Q9C7N5|GDL14_ARATH (e_value=1e-42) GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1;; (*TAIR) AT1G29660.1 (e_value=1e-43) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10371955-10373624 FORWARD LENGTH=364;; (*ITAG) Solyc03g005910.2.1 (e_value=7e-83) genomic_reference:SL2.40ch03 gene_region:614359-618748 transcript_region:SL2.40ch03:614359..618748+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003369g0007.1 protein AED:0.09 eAED:0.09 QI:381|1|1|1|0.72|0.83|12|321|460; (*GB) gi|225443668|ref|XP_002263226.1| (e_value=0.0) PREDICTED: dual specificity protein kinase shkB [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-43) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT3G58760.1 (e_value=0.0) | Symbols: | Integrin-linked protein kinase family | chr3:21728756-21731740 FORWARD LENGTH=471;; (*ITAG) Solyc03g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:619237-627172 transcript_region:SL2.40ch03:619237..627172- go_terms:GO:0004713 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 *-** PTK6_MOUSE); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004713 NbS00002714g0002.1 protein AED:0.01 eAED:0.01 QI:7|1|1|1|1|1|3|75|370; (*GB) gi|164454783|dbj|BAF96938.1| (e_value=0.0) flavanone 3-hydroxylase [Nicotiana tabacum];; (*SWP) sp|Q07353|FL3H_PETHY (e_value=0.0) Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1;; (*TAIR) AT3G51240.1 (e_value=0.0) | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase | chr3:19025409-19026658 FORWARD LENGTH=358;; (*ITAG) Solyc02g083860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41699714-41701777 transcript_region:SL2.40ch02:41699714..41701777- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase (AHRD V1 ***- A9ZMI9_TOBAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00002714g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|12|1445|567; (*GB) gi|16904224|gb|AAL30819.1|AF435451_1 (e_value=0.0) calcium-dependent protein kinase CPK4 [Nicotiana tabacum];; (*SWP) sp|Q7XJR9|CDPKG_ARATH (e_value=0.0) Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1;; (*TAIR) AT2G17890.1 (e_value=0.0) | Symbols: CPK16 | calcium-dependent protein kinase 16 | chr2:7769885-7772627 REVERSE LENGTH=571;; (*ITAG) Solyc02g083850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41690032-41695031 transcript_region:SL2.40ch02:41690032..41695031- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** C6KGT3_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00025695g0003.1 protein AED:0.05 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|270; (*GB) gi|225453923|ref|XP_002279521.1| (e_value=3e-96) PREDICTED: LOB domain-containing protein 18 [Vitis vinifera];; (*SWP) sp|O22131|LBD18_ARATH (e_value=3e-79) LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2;; (*TAIR) AT2G45420.1 (e_value=3e-80) | Symbols: LBD18 | LOB domain-containing protein 18 | chr2:18718601-18720445 FORWARD LENGTH=262;; (*ITAG) Solyc01g091420.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76810419-76814829 transcript_region:SL2.40ch01:76810419..76814829+ functional_description:"LOB domain protein 30 (AHRD V1 ***- D7M5R6_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00014753g0016.1 protein AED:0.22 eAED:0.22 QI:188|0.9|0.90|1|0.95|0.90|21|267|810; (*GB) gi|302143104|emb|CBI20399.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L6Y1|UBP14_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1;; (*TAIR) AT3G20630.1 (e_value=0.0) | Symbols: UBP14, TTN6, ATUBP14, PER1 | ubiquitin-specific protease 14 | chr3:7203001-7208340 REVERSE LENGTH=797;; (*ITAG) Solyc07g063650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63283470-63293518 transcript_region:SL2.40ch07:63283470..63293518- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9N564_POPTR); contains Interpro domain(s) IPR016652 Ubiquitinyl hydrolase "; GO:0004843 NbS00014753g0021.1 protein AED:0.24 eAED:0.24 QI:144|1|1|1|0.66|0.57|7|320|223; (*GB) gi|224116236|ref|XP_002317246.1| (e_value=1e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYN2|VAP42_ARATH (e_value=1e-96) Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1;; (*TAIR) AT4G21450.1 (e_value=1e-97) | Symbols: | PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295;; (*ITAG) Solyc12g005390.1.1 (e_value=1e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:231873-235689 transcript_region:SL2.40ch12:231873..235689+ go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00014753g0003.1 protein AED:0.29 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|83 NbS00014753g0020.1 protein AED:0.39 eAED:0.40 QI:26|0.5|0.53|0.92|0.5|0.69|13|0|535; (*GB) gi|255569621|ref|XP_002525776.1| (e_value=2e-175) diacylglycerol kinase, alpha, putative [Ricinus communis];; (*SWP) sp|O75912|DGKI_HUMAN (e_value=3e-26) Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1;; (*TAIR) AT2G20900.2 (e_value=2e-166) | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491;; (*ITAG) Solyc12g005380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:224569-229111 transcript_region:SL2.40ch12:224569..229111+ go_terms:GO:0007205 functional_description:"Diacylglycerol kinase (AHRD V1 ***- Q9FVD1_SOLLC); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0007205 NbS00014753g0022.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0.5|0.33|3|0|180; (*GB) gi|302143085|emb|CBI20380.3| (e_value=2e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94AS9|CNGC4_ARATH (e_value=9e-88) Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2;; (*TAIR) AT5G54250.3 (e_value=1e-89) | Symbols: CNGC4 | cyclic nucleotide-gated cation channel 4 | chr5:22025684-22029971 REVERSE LENGTH=689;; (*ITAG) Solyc12g005400.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:236128-242060 transcript_region:SL2.40ch12:236128..242060- functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00014753g0024.1 protein AED:0.41 eAED:0.70 QI:0|0|0|0.8|0|0.2|5|0|139; (*GB) gi|255569589|ref|XP_002525760.1| (e_value=7e-18) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q94AS9|CNGC4_ARATH (e_value=3e-16) Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2;; (*TAIR) AT5G54250.2 (e_value=2e-17) | Symbols: ATCNGC4, CNGC4, HLM1, DND2 | cyclic nucleotide-gated cation channel 4 | chr5:22025684-22029971 REVERSE LENGTH=694;; (*ITAG) Solyc12g005400.1.1 (e_value=7e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:236128-242060 transcript_region:SL2.40ch12:236128..242060- functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00014753g0023.1 protein AED:0.51 eAED:0.76 QI:64|0|0|1|0|0|2|0|84 NbS00013648g0012.1 protein AED:0.31 eAED:0.32 QI:0|0.83|0.76|1|0.66|0.76|13|758|393; (*GB) gi|356556680|ref|XP_003546651.1| (e_value=1e-163) PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic-like [Glycine max];; (*SWP) sp|Q8LEU3|NOL_ARATH (e_value=1e-152) Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=2 SV=1;; (*TAIR) AT5G04900.1 (e_value=1e-153) | Symbols: NOL | NYC1-like | chr5:1434826-1437194 FORWARD LENGTH=348;; (*ITAG) Solyc05g032660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:43162183-43177288 transcript_region:SL2.40ch05:43162183..43177288- go_terms:GO:0050327,GO:0034256 functional_description:"Dehydrogenase/ reductase 3 (AHRD V1 *--* Q3INM6_NATPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0050327,GO:0034256 NbS00014404g0001.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|143; (*GB) gi|255565107|ref|XP_002523546.1| (e_value=7e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g007100.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1856784-1857074 transcript_region:SL2.40ch07:1856784..1857074+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029638g0010.1 protein AED:0.34 eAED:0.34 QI:188|1|1|1|0.57|0.62|8|316|209; (*GB) gi|359807381|ref|NP_001241639.1| (e_value=1e-99) uncharacterized protein LOC100805631 [Glycine max];; (*SWP) sp|Q94A97|UBC35_ARATH (e_value=1e-100) Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1;; (*TAIR) AT1G78870.2 (e_value=1e-101) | Symbols: UBC35, UBC13A | ubiquitin-conjugating enzyme 35 | chr1:29650589-29652203 FORWARD LENGTH=153;; (*ITAG) Solyc10g007260.2.1 (e_value=1e-101) genomic_reference:SL2.40ch10 gene_region:1673007-1678261 transcript_region:SL2.40ch10:1673007..1678261- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00029638g0006.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|72; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-19) hypothetical protein [Nicotiana tabacum]; NbS00023642g0005.1 protein AED:0.02 eAED:0.02 QI:213|0.85|0.66|1|0.85|0.8|15|0|1757; (*GB) gi|297745622|emb|CBI40787.3| (e_value=2e-105) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G20970.1 (e_value=1e-82) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7314338-7319246 FORWARD LENGTH=1364;; (*ITAG) Solyc05g008780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3003423-3014261 transcript_region:SL2.40ch05:3003423..3014261- functional_description:"Proton pump interactor 1 (AHRD V1 *--- D5L6G0_SOLTU)"; NbS00023642g0004.1 protein AED:0.45 eAED:0.51 QI:0|0|0|0.33|1|1|3|0|226; (*ITAG) Solyc11g066230.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49036976-49038992 transcript_region:SL2.40ch11:49036976..49038992- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355,GO:0045449 NbS00010933g0002.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|1|1|2|0|176; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-45) hypothetical protein [Nicotiana tabacum]; NbS00059253g0004.1 protein AED:0.33 eAED:0.33 QI:145|0.5|0.33|1|0.5|0.33|3|0|219; (*GB) gi|350535951|ref|NP_001234222.1| (e_value=1e-101) glutathione-S-transferase [Solanum lycopersicum];; (*SWP) sp|Q9ZW24|GSTU7_ARATH (e_value=3e-46) Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=2e-47) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc01g099590.2.1 (e_value=1e-101) genomic_reference:SL2.40ch01 gene_region:81537869-81539125 transcript_region:SL2.40ch01:81537869..81539125- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione-S-transferase (AHRD V1 **** A3FMP5_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00037672g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|496; (*GB) gi|15982240|emb|CAC91565.1| (e_value=0.0) hydroperoxide lyase [Nicotiana attenuata];; (*SWP) sp|P48417|CP74_LINUS (e_value=2e-118) Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1;; (*TAIR) AT4G15440.1 (e_value=4e-151) | Symbols: HPL1, CYP74B2 | hydroperoxide lyase 1 | chr4:8835869-8838462 FORWARD LENGTH=384;; (*ITAG) Solyc07g049690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57369720-57376439 transcript_region:SL2.40ch07:57369720..57376439+ go_terms:GO:0020037 functional_description:"Cytochrome P450"; GO:0020037 NbS00037672g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|0|0|2|0|1039; (*GB) gi|255540657|ref|XP_002511393.1| (e_value=2e-41) hypothetical protein RCOM_1510520 [Ricinus communis];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=2e-24) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=2e-25) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc06g071490.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:40387328-40390735 transcript_region:SL2.40ch06:40387328..40390735- functional_description:"Serine/threonine-protein kinase ATM (AHRD V1 *--- ATM_ARATH); contains Interpro domain(s) IPR000313 PWWP "; NbS00016737g0005.1 protein AED:0.30 eAED:0.32 QI:0|0.5|0.42|1|0.66|0.85|7|0|541; (*GB) gi|380042366|gb|AFD33347.1| (e_value=0.0) acyl-activating enzyme 3 [Cannabis sativa];; (*SWP) sp|Q9M0X9|4CLL7_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1;; (*TAIR) AT4G05160.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr4:2664451-2666547 FORWARD LENGTH=544;; (*ITAG) Solyc11g069050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50710072-50716678 transcript_region:SL2.40ch11:50710072..50716678+ go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9N213_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00016141g0001.1 protein AED:0.32 eAED:0.40 QI:0|0|0|0.33|1|1|3|0|111 NbS00016141g0006.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0.33|3|0|134; (*ITAG) Solyc11g068410.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00016141g0005.1 protein AED:0.40 eAED:0.91 QI:0|0|0|1|0.5|0.33|3|0|197 NbS00058434g0003.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|575; (*GB) gi|118153939|gb|ABK63967.1| (e_value=0.0) PT4 [Nicotiana tabacum];; (*SWP) sp|Q94DB8|PT111_ORYSJ (e_value=0.0) Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g051850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32056126-32057763 transcript_region:SL2.40ch06:32056126..32057763- go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter 6 (AHRD V1 **** Q5CC71_MAIZE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005315 NbS00038234g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|255555811|ref|XP_002518941.1| (e_value=7e-27) hypothetical protein RCOM_1314350 [Ricinus communis];; (*TAIR) AT3G43430.1 (e_value=3e-14) | Symbols: | RING/U-box superfamily protein | chr3:15354758-15355261 REVERSE LENGTH=167;; (*ITAG) Solyc02g083660.1.1 (e_value=1e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41559178-41559678 transcript_region:SL2.40ch02:41559178..41559678+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- A1C6D2_ASPCL); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00048542g0003.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.25|1|1|4|0|115; (*ITAG) Solyc02g078200.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:37533967-37538228 transcript_region:SL2.40ch02:37533967..37538228+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6TJJ8_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00026146g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|224108037|ref|XP_002314698.1| (e_value=6e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|P14937|FER2_RAPSA (e_value=5e-24) Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1;; (*TAIR) AT4G14890.1 (e_value=4e-64) | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily protein | chr4:8520887-8521351 FORWARD LENGTH=154;; (*ITAG) Solyc03g005190.2.1 (e_value=5e-90) genomic_reference:SL2.40ch03 gene_region:115979-117377 transcript_region:SL2.40ch03:115979..117377- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 *-*- Q8LD29_ARATH); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00026146g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|360; (*GB) gi|224099809|ref|XP_002311628.1| (e_value=5e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22450.1 (e_value=3e-69) | Symbols: | Ribosomal L18p/L5e family protein | chr3:7962443-7963378 FORWARD LENGTH=311;; (*ITAG) Solyc03g005180.1.1 (e_value=3e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:114186-115265 transcript_region:SL2.40ch03:114186..115265+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7L1Q2_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00026146g0013.1 protein AED:0.17 eAED:0.26 QI:0|0.87|0.77|1|0.5|0.55|9|0|1209; (*GB) gi|359477348|ref|XP_002278432.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247619 [Vitis vinifera];; (*TAIR) AT4G14920.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr4:8531157-8535842 REVERSE LENGTH=1138;; (*ITAG) Solyc03g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:101151-112258 transcript_region:SL2.40ch03:101151..112258+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00026146g0014.1 protein AED:0.23 eAED:0.23 QI:10|0|0|1|0|0|2|0|283; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-51) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00026146g0012.1 protein AED:0.49 eAED:0.53 QI:0|0|0|1|0|0|4|0|165 NbS00039321g0004.1 protein AED:0.20 eAED:0.28 QI:0|0.25|0.2|1|0|0|5|0|123; (*ITAG) Solyc12g010230.1.1 (e_value=2e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3342181-3346441 transcript_region:SL2.40ch12:3342181..3346441+ functional_description:"Os06g0183700 protein (Fragment) (AHRD V1 *-*- Q0DE22_ORYSJ)"; NbS00016194g0005.1 protein AED:0.23 eAED:0.23 QI:119|1|1|1|1|1|2|258|273; (*GB) gi|225470960|ref|XP_002266683.1| (e_value=8e-112) PREDICTED: uncharacterized protein LOC100253490 [Vitis vinifera];; (*TAIR) AT1G01225.1 (e_value=2e-104) | Symbols: | NC domain-containing protein-related | chr1:96064-97242 FORWARD LENGTH=260;; (*ITAG) Solyc12g055850.1.1 (e_value=8e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47218869-47222331 transcript_region:SL2.40ch12:47218869..47222331+ functional_description:"NC domain-containing protein (AHRD V1 **-- A6MD14_9ORYZ); contains Interpro domain(s) IPR007053 NC "; NbS00002729g0004.1 protein AED:0.24 eAED:0.24 QI:117|1|1|1|0.75|0.8|5|333|167; (*GB) gi|296083832|emb|CBI24220.3| (e_value=3e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57090.1 (e_value=1e-65) | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170;; (*ITAG) Solyc12g099770.1.1 (e_value=2e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65121351-65124319 transcript_region:SL2.40ch12:65121351..65124319+ go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00034531g0001.1 protein AED:0.13 eAED:0.23 QI:0|0|0|1|0|0|2|0|78 NbS00003531g0001.1 protein AED:0.26 eAED:0.28 QI:724|0|0.5|1|0|0.5|2|0|327; (*GB) gi|350539886|ref|NP_001234564.1| (e_value=7e-93) TCP transcription factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9FME3|TCP5_ARATH (e_value=5e-45) Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=2 SV=1;; (*TAIR) AT5G60970.1 (e_value=4e-46) | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 | chr5:24535570-24536652 REVERSE LENGTH=360;; (*ITAG) Solyc03g115010.1.1 (e_value=3e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58919864-58920889 transcript_region:SL2.40ch03:58919864..58920889- functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00052773g0009.1 protein AED:0.18 eAED:0.18 QI:304|0.91|0.92|1|0.75|0.69|13|2465|533; (*GB) gi|255585154|ref|XP_002533282.1| (e_value=0.0) zinc ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q8W4F0|DAR1_ARATH (e_value=0.0) Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3;; (*TAIR) AT4G36860.1 (e_value=0.0) | Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553;; (*ITAG) Solyc02g089930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46180875-46185136 transcript_region:SL2.40ch02:46180875..46185136- go_terms:GO:0008270 functional_description:"Homeobox protein LIM-3 (Fragment) (AHRD V1 *--- O42286_DANRE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00060711g0003.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|225459556|ref|XP_002285854.1| (e_value=2e-29) PREDICTED: uncharacterized protein LOC100260772 [Vitis vinifera];; (*TAIR) AT1G21830.1 (e_value=1e-15) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7661429-7662521 REVERSE LENGTH=206;; (*ITAG) Solyc11g013450.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6470193-6472721 transcript_region:SL2.40ch11:6470193..6472721+ functional_description:"CAA30371.1 protein (Fragment) (AHRD V1 ***- Q9ST96_ORYSA)"; NbS00060711g0002.1 protein AED:0.44 eAED:0.51 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|225459556|ref|XP_002285854.1| (e_value=9e-17) PREDICTED: uncharacterized protein LOC100260772 [Vitis vinifera];; (*TAIR) AT1G21830.1 (e_value=5e-12) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7661429-7662521 REVERSE LENGTH=206;; (*ITAG) Solyc11g013450.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6470193-6472721 transcript_region:SL2.40ch11:6470193..6472721+ functional_description:"CAA30371.1 protein (Fragment) (AHRD V1 ***- Q9ST96_ORYSA)"; NbS00053540g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|111 NbS00016897g0015.1 protein AED:0.16 eAED:0.16 QI:189|1|0.87|1|1|1|8|0|361; (*GB) gi|296083855|emb|CBI24243.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G13500.3 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:4338676-4340827 FORWARD LENGTH=358;; (*ITAG) Solyc11g064850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47171999-47179068 transcript_region:SL2.40ch11:47171999..47179068+ functional_description:"Os04g0226400 protein (Fragment) (AHRD V1 *-*- C7J118_ORYSJ)"; NbS00016897g0017.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|223; (*GB) gi|224059734|ref|XP_002299981.1| (e_value=1e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12310.1 (e_value=3e-58) | Symbols: | RING/U-box superfamily protein | chr5:3980485-3982093 REVERSE LENGTH=254;; (*ITAG) Solyc11g064830.1.1 (e_value=2e-107) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:47135688-47142111 transcript_region:SL2.40ch11:47135688..47142111+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LZ79_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016897g0005.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|409; (*GB) gi|224103953|ref|XP_002313258.1| (e_value=6e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12300.1 (e_value=8e-45) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:3978508-3979632 REVERSE LENGTH=374;; (*ITAG) Solyc11g064840.1.1 (e_value=8e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47142946-47144115 transcript_region:SL2.40ch11:47142946..47144115- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7M4I2_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00016897g0019.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.88|0.89|19|291|805; (*GB) gi|296083863|emb|CBI24251.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9P2F6|RHG20_HUMAN (e_value=9e-14) Rho GTPase-activating protein 20 OS=Homo sapiens GN=ARHGAP20 PE=1 SV=2;; (*TAIR) AT5G19390.2 (e_value=0.0) | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870;; (*ITAG) Solyc01g008770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2797441-2815705 transcript_region:SL2.40ch01:2797441..2815705+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *--* Q6P4P5_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00020301g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|1128; (*GB) gi|145666466|gb|ABP88740.1| (e_value=0.0) putative receptor-like protein kinase [Capsicum frutescens];; (*SWP) sp|C0LGS2|Y4361_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1;; (*TAIR) AT4G36180.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:17120209-17123698 REVERSE LENGTH=1136;; (*ITAG) Solyc03g033610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9451066-9454452 transcript_region:SL2.40ch03:9451066..9454452- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00020301g0013.1 protein AED:0.05 eAED:0.05 QI:88|0|0.5|0.5|1|1|2|0|86 NbS00038817g0015.1 protein AED:0.37 eAED:0.37 QI:41|0.8|0.83|1|0.2|0.83|6|345|126; (*GB) gi|359492680|ref|XP_002281383.2| (e_value=3e-53) PREDICTED: maf-like protein DDB_G0281937-like [Vitis vinifera];; (*SWP) sp|Q54TC5|MAFL2_DICDI (e_value=9e-16) Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum GN=DDB_G0281937 PE=3 SV=1;; (*TAIR) AT5G42770.2 (e_value=2e-44) | Symbols: | Maf-like protein | chr5:17152147-17154355 FORWARD LENGTH=233;; (*ITAG) Solyc04g080440.2.1 (e_value=3e-72) genomic_reference:SL2.40ch04 gene_region:62208525-62213336 transcript_region:SL2.40ch04:62208525..62213336- go_terms:GO:0005737 functional_description:"Maf-like protein CV_0124 (AHRD V1 ***- B6TNZ3_MAIZE); contains Interpro domain(s) IPR003697 Maf-like protein "; GO:0005737 NbS00038817g0010.1 protein AED:0.17 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|131|85; (*GB) gi|255538654|ref|XP_002510392.1| (e_value=9e-23) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G75250.1 (e_value=1e-21) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc12g089170.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62729446-62729721 transcript_region:SL2.40ch12:62729446..62729721- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 ***- D7KSM0_ARALY); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00038817g0014.1 protein AED:0.20 eAED:0.20 QI:236|1|0.91|1|0.72|0.75|12|159|209; (*GB) gi|225458281|ref|XP_002281422.1| (e_value=4e-93) PREDICTED: cytosolic purine 5'-nucleotidase [Vitis vinifera];; (*SWP) sp|Q54XC1|5NTC_DICDI (e_value=2e-14) Cytosolic purine 5'-nucleotidase OS=Dictyostelium discoideum GN=nt5c2 PE=3 SV=1;; (*TAIR) AT1G75210.1 (e_value=1e-92) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr1:28223990-28228751 FORWARD LENGTH=642;; (*ITAG) Solyc04g080430.2.1 (e_value=3e-106) genomic_reference:SL2.40ch04 gene_region:62193893-62203160 transcript_region:SL2.40ch04:62193893..62203160+ go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-Nucleotidase (AHRD V1 **** C1FIJ4_9CHLO); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00001633g0002.1 protein AED:0.15 eAED:0.15 QI:296|0.84|0.75|1|1|1|20|0|1413; (*GB) gi|302144085|emb|CBI23190.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5XTS1|PLPL8_RABIT (e_value=2e-48) Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus GN=PNPLA8 PE=1 SV=1;; (*TAIR) AT1G61850.2 (e_value=0.0) | Symbols: | phospholipases;galactolipases | chr1:22856317-22862225 FORWARD LENGTH=1309;; (*ITAG) Solyc02g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39169442-39178222 transcript_region:SL2.40ch02:39169442..39178222+ go_terms:GO:0047714,GO:0004620 functional_description:"Patatin-like phospholipase family protein (AHRD V1 *--* A8PYJ4_BRUMA); contains Interpro domain(s) IPR002641 Patatin "; GO:0047714,GO:0004620 NbS00015779g0007.1 protein AED:0.00 eAED:0.00 QI:53|1|1|1|1|1|2|36|225; (*GB) gi|27803890|gb|AAO22065.1| (e_value=2e-103) NtPRp27-like protein [Solanum tuberosum];; (*TAIR) AT2G15220.1 (e_value=4e-82) | Symbols: | Plant basic secretory protein (BSP) family protein | chr2:6608689-6609366 FORWARD LENGTH=225;; (*ITAG) Solyc01g107540.2.1 (e_value=1e-102) genomic_reference:SL2.40ch01 gene_region:86811706-86812625 transcript_region:SL2.40ch01:86811706..86812625+ functional_description:"PBSP domain-containing protein (AHRD V1 **-- C9S7G7_VERA1); contains Interpro domain(s) IPR007541 Plant Basic Secretory Protein "; NbS00015779g0005.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|183; (*GB) gi|224056210|ref|XP_002298757.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39266|ZFP7_ARATH (e_value=4e-14) Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1;; (*TAIR) AT1G24625.1 (e_value=3e-15) | Symbols: ZFP7 | zinc finger protein 7 | chr1:8726009-8726638 REVERSE LENGTH=209;; (*ITAG) Solyc10g049870.1.1 (e_value=9e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:42453957-42454475 transcript_region:SL2.40ch10:42453957..42454475- go_terms:GO:0003700 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *-** D8S6B6_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00015779g0116.1 protein AED:0.04 eAED:0.04 QI:296|1|1|1|0.83|0.71|7|447|417 NbS00015779g0114.1 protein AED:0.04 eAED:0.04 QI:234|1|1|1|0.8|0.66|6|1065|142 NbS00015779g0118.1 protein AED:0.30 eAED:0.30 QI:64|0.66|0.85|1|0.66|0.85|7|274|307 NbS00034040g0003.1 protein AED:0.25 eAED:0.32 QI:0|0.33|0.25|1|0|0|4|498|114; (*GB) gi|388496242|gb|AFK36187.1| (e_value=6e-18) unknown [Lotus japonicus];; (*TAIR) AT5G09225.1 (e_value=6e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:2869556-2870379 REVERSE LENGTH=68;; (*ITAG) Solyc10g078420.1.1 (e_value=1e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59562875-59563495 transcript_region:SL2.40ch10:59562875..59563495- functional_description:"Unknown Protein (AHRD V1)"; NbS00006881g0008.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.75|0.6|5|380|514; (*GB) gi|359494374|ref|XP_002265613.2| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 6-like [Vitis vinifera];; (*SWP) sp|Q9SA22|P2C06_ARATH (e_value=0.0) Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1;; (*TAIR) AT1G16220.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:5548653-5550553 FORWARD LENGTH=491;; (*ITAG) Solyc07g066260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64967366-64971589 transcript_region:SL2.40ch07:64967366..64971589- go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00006881g0106.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|370 NbS00006881g0107.1 protein AED:0.24 eAED:0.27 QI:693|0.85|0.87|1|0.85|0.87|8|545|568 NbS00006881g0210.1 protein AED:0.05 eAED:0.05 QI:7|0.5|0.33|0.66|1|1|3|0|347 NbS00006881g0209.1 protein AED:0.38 eAED:0.38 QI:0|0.12|0.11|0.88|0.75|0.66|9|0|670 NbS00039010g0008.1 protein AED:0.27 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|220; (*GB) gi|297740546|emb|CBI30728.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G18830.1 (e_value=8e-34) | Symbols: ATOFP5, OFP5 | ovate family protein 5 | chr4:10337449-10338498 FORWARD LENGTH=349;; (*ITAG) Solyc02g072030.1.1 (e_value=3e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35908214-35909347 transcript_region:SL2.40ch02:35908214..35909347- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U5V3_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00039010g0022.1 protein AED:0.30 eAED:0.32 QI:0|0.8|0.33|1|0.8|0.66|6|0|627; (*GB) gi|225461752|ref|XP_002285551.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246883 [Vitis vinifera];; (*SWP) sp|Q9URW6|YIE2_SCHPO (e_value=2e-25) SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1;; (*TAIR) AT1G29800.1 (e_value=0.0) | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr1:10432736-10435177 FORWARD LENGTH=510;; (*ITAG) Solyc02g071980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35885108-35890512 transcript_region:SL2.40ch02:35885108..35890512+ go_terms:GO:0035091 functional_description:"Actin-binding protein involved in bundling of actin filaments and endocytosis of actin cortical patches activity stimulated by Las17p contains SH3 domain similar to Rvs167p (AHRD V1 *--* D3DKW1_YEAST); contains Interpro domain(s) IPR007461 Ysc84 actin-binding domain "; GO:0035091 NbS00039010g0017.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|1|1|2|0|292; (*GB) gi|255562530|ref|XP_002522271.1| (e_value=6e-116) BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=7e-90) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=6e-91) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc02g071990.2.1 (e_value=1e-150) genomic_reference:SL2.40ch02 gene_region:35891251-35896029 transcript_region:SL2.40ch02:35891251..35896029- go_terms:GO:0030528 functional_description:"Brassinosteroid signaling positive regulator-related protein (Fragment) (AHRD V1 *--* B3VVE5_POPTN); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00039010g0007.1 protein AED:0.29 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255562526|ref|XP_002522269.1| (e_value=5e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g072030.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35908214-35909347 transcript_region:SL2.40ch02:35908214..35909347- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U5V3_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00039010g0013.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|553; (*GB) gi|225443714|ref|XP_002265079.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Vitis vinifera];; (*SWP) sp|O49399|PP321_ARATH (e_value=6e-160) Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=2 SV=2;; (*TAIR) AT4G18840.1 (e_value=5e-161) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=545;; (*ITAG) Solyc02g072010.1.1 (e_value=1e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35906276-35907070 transcript_region:SL2.40ch02:35906276..35907070+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9E6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00039010g0020.1 protein AED:0.07 eAED:0.07 QI:1131|1|0.75|1|0.33|0.25|4|0|408; (*GB) gi|5821138|dbj|BAA83711.1| (e_value=0.0) heat shock factor [Nicotiana tabacum];; (*SWP) sp|O49403|HFA4A_ARATH (e_value=2e-112) Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1;; (*TAIR) AT4G18880.1 (e_value=2e-113) | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription factor A4A | chr4:10347769-10349051 REVERSE LENGTH=401;; (*ITAG) Solyc02g072000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35903150-35904957 transcript_region:SL2.40ch02:35903150..35904957+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbC26207102g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|72; (*ITAG) Solyc03g118050.2.1 (e_value=9e-28) genomic_reference:SL2.40ch03 gene_region:61095328-61096752 transcript_region:SL2.40ch03:61095328..61096752- go_terms:GO:0008026 functional_description:"Unknown Protein (AHRD V1)"; GO:0008026 NbC26207102g0001.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|69 NbS00019936g0001.1 protein AED:0.31 eAED:0.64 QI:0|0|0|1|1|1|2|0|93 NbS00015175g0005.1 protein AED:0.32 eAED:0.34 QI:0|0.4|0.16|1|0.4|0.66|6|0|233; (*GB) gi|225470599|ref|XP_002274463.1| (e_value=1e-123) PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q32Q06|AP1M1_RAT (e_value=3e-90) AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3;; (*TAIR) AT1G60780.1 (e_value=2e-125) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc06g071650.1.1 (e_value=5e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40515207-40517639 transcript_region:SL2.40ch06:40515207..40517639- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu (AHRD V1 ***- Q7RVT3_NEUCR); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00034316g0003.1 protein AED:0.15 eAED:0.15 QI:255|1|1|1|1|1|2|372|258; (*GB) gi|225430832|ref|XP_002273030.1| (e_value=2e-118) PREDICTED: minor allergen Alt a 7-like [Vitis vinifera];; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=8e-51) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G36750.1 (e_value=9e-118) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc03g034140.2.1 (e_value=9e-115) genomic_reference:SL2.40ch03 gene_region:10112093-10115080 transcript_region:SL2.40ch03:10112093..10115080+ go_terms:GO:0010181,GO:0050625 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0010181,GO:0050625 NbS00001863g0007.1 protein AED:0.01 eAED:0.02 QI:0|0|0|0.66|1|1|3|0|807; (*ITAG) Solyc05g008490.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2831228-2834711 transcript_region:SL2.40ch05:2831228..2834711- functional_description:"Unknown Protein (AHRD V1)"; NbS00001863g0008.1 protein AED:0.05 eAED:0.05 QI:96|0.5|0.66|1|1|1|3|225|198; (*GB) gi|225424140|ref|XP_002283949.1| (e_value=3e-102) PREDICTED: histone chaperone ASF1B [Vitis vinifera];; (*SWP) sp|Q9C9M6|ASF1A_ARATH (e_value=1e-98) Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1;; (*TAIR) AT1G66740.1 (e_value=1e-99) | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone chaperone | chr1:24892586-24893548 FORWARD LENGTH=196;; (*ITAG) Solyc05g008480.2.1 (e_value=4e-115) genomic_reference:SL2.40ch05 gene_region:2827792-2830523 transcript_region:SL2.40ch05:2827792..2830523+ go_terms:GO:0042393 functional_description:"Histone chaperone asf1 (AHRD V1 **** B0XH11_CULQU); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00041548g0011.1 protein AED:0.02 eAED:0.02 QI:177|0.83|0.71|1|0.5|0.57|7|560|314; (*GB) gi|359488373|ref|XP_002278322.2| (e_value=4e-80) PREDICTED: transcription factor BIM2-like [Vitis vinifera];; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=7e-40) Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1;; (*TAIR) AT1G69010.1 (e_value=5e-41) | Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311;; (*ITAG) Solyc03g046570.2.1 (e_value=8e-80) genomic_reference:SL2.40ch03 gene_region:17150323-17152819 transcript_region:SL2.40ch03:17150323..17152819+ functional_description:"BHLH domain class transcription factor (AHRD V1 ***- D9ZIP3_MALDO)"; NbS00042552g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.4|1|1|1|5|0|406; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc01g008740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2776811-2782126 transcript_region:SL2.40ch01:2776811..2782126+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 17 (AHRD V1 **** Q6KC53_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00040511g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|1|1|3|309|362; (*GB) gi|225438801|ref|XP_002283225.1| (e_value=0.0) PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera];; (*SWP) sp|Q8K582|DUS1L_RAT (e_value=2e-67) tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1;; (*TAIR) AT5G67220.1 (e_value=1e-165) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423;; (*ITAG) Solyc02g093060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48580755-48583810 transcript_region:SL2.40ch02:48580755..48583810+ go_terms:GO:0005515,GO:0017150 functional_description:"tRNA-dihydrouridine synthase 1-like protein (AHRD V1 **** D3BAF6_POLPA); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0005515,GO:0017150 NbS00055997g0002.1 protein AED:0.19 eAED:0.19 QI:99|1|1|1|0.5|0.33|3|116|233; (*GB) gi|224132546|ref|XP_002321345.1| (e_value=1e-116) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24600.1 (e_value=7e-104) | Symbols: | Protein of unknown function, DUF599 | chr5:8421790-8423342 REVERSE LENGTH=248;; (*ITAG) Solyc03g079980.1.1 (e_value=7e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45436057-45436853 transcript_region:SL2.40ch03:45436057..45436853+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00004312g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0|2|716|705; (*GB) gi|49533766|gb|AAT66765.1| (e_value=0.0) Putative selenium-binding protein, related [Solanum demissum];; (*SWP) sp|Q680H3|PP170_ARATH (e_value=4e-154) Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2;; (*TAIR) AT2G25580.1 (e_value=3e-155) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:10888102-10889949 FORWARD LENGTH=615;; (*ITAG) Solyc05g007740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:2208642-2210825 transcript_region:SL2.40ch05:2208642..2210825+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00004312g0013.1 protein AED:0.17 eAED:0.23 QI:0|0|0|1|0.5|0.66|3|0|424; (*GB) gi|49533769|gb|AAT66768.1| (e_value=0.0) T24P13.14, putative [Solanum demissum];; (*TAIR) AT1G26761.1 (e_value=2e-134) | Symbols: | Arabinanase/levansucrase/invertase | chr1:9250269-9251603 REVERSE LENGTH=444;; (*ITAG) Solyc05g007680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2173067-2174386 transcript_region:SL2.40ch05:2173067..2174386+ functional_description:"Laminin G sub domain 2 (AHRD V1 ***- B9LG59_CHLSY)"; NbS00004312g0014.1 protein AED:0.12 eAED:0.12 QI:53|0.66|0.75|1|0.33|0.75|4|695|321; (*GB) gi|113205356|gb|AAT66766.2| (e_value=0.0) Mitochondrial carrier protein [Solanum demissum];; (*SWP) sp|O95847|UCP4_HUMAN (e_value=6e-75) Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1;; (*TAIR) AT1G14140.1 (e_value=3e-137) | Symbols: | Mitochondrial substrate carrier family protein | chr1:4838131-4839602 REVERSE LENGTH=305;; (*ITAG) Solyc05g007730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2204994-2207630 transcript_region:SL2.40ch05:2204994..2207630- go_terms:GO:0017077 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- Q6F2C9_SOLDE); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0017077 NbS00007833g0010.1 protein AED:0.02 eAED:0.04 QI:21|1|0|1|1|1|2|509|71; (*GB) gi|255581182|ref|XP_002531404.1| (e_value=4e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g025670.2.1 (e_value=2e-26) genomic_reference:SL2.40ch04 gene_region:22173162-22175441 transcript_region:SL2.40ch04:22173162..22175441- functional_description:"Os02g0741900 protein (Fragment) (AHRD V1 ***- Q0DXN9_ORYSJ); contains Interpro domain(s) IPR019181 RNA-processing, Lsm domain "; NbS00007833g0009.1 protein AED:0.07 eAED:0.07 QI:40|1|1|1|1|1|6|68|397; (*GB) gi|255548199|ref|XP_002515156.1| (e_value=1e-131) monoxygenase, putative [Ricinus communis];; (*TAIR) AT4G15760.1 (e_value=1e-112) | Symbols: MO1 | monooxygenase 1 | chr4:8972785-8974548 REVERSE LENGTH=422;; (*ITAG) Solyc04g025650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22160294-22164784 transcript_region:SL2.40ch04:22160294..22164784- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding (AHRD V1 **-- A1TC37_MYCVP); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00007833g0002.1 protein AED:0.22 eAED:0.81 QI:0|0|0.5|1|0|0.5|2|35|71 NbS00007524g0007.1 protein AED:0.05 eAED:0.05 QI:608|1|0.90|1|0.9|0.81|11|446|577; (*GB) gi|225427316|ref|XP_002279150.1| (e_value=0.0) PREDICTED: two-component response regulator-like APRR2 [Vitis vinifera];; (*SWP) sp|Q6LA43|APRR2_ARATH (e_value=3e-128) Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2;; (*TAIR) AT4G18020.6 (e_value=3e-129) | Symbols: APRR2 | CheY-like two-component responsive regulator family protein | chr4:10003738-10006682 REVERSE LENGTH=535;; (*ITAG) Solyc06g061030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35458941-35463705 transcript_region:SL2.40ch06:35458941..35463705+ go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00007524g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|0.83|0.71|7|0|363; (*GB) gi|224126337|ref|XP_002329529.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42583|KPRS2_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2;; (*TAIR) AT1G32380.1 (e_value=0.0) | Symbols: PRS2 | phosphoribosyl pyrophosphate (PRPP) synthase 2 | chr1:11682033-11684229 FORWARD LENGTH=400;; (*ITAG) Solyc08g077200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00025706g0002.1 protein AED:0.07 eAED:0.07 QI:675|0|0.5|1|0|0.5|2|166|557; (*GB) gi|56555147|gb|AAV98199.1| (e_value=0.0) phenylalanine ammonialyase 1 [Petunia x hybrida];; (*SWP) sp|O64963|PAL1_PRUAV (e_value=0.0) Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=0.0) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00016536g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|255539735|ref|XP_002510932.1| (e_value=1e-77) 21 kDa protein precursor, putative [Ricinus communis];; (*SWP) sp|P17407|21KD_DAUCA (e_value=8e-68) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62350.1 (e_value=1e-68) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25037504-25038112 FORWARD LENGTH=202;; (*ITAG) Solyc06g034370.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:20869116-20869694 transcript_region:SL2.40ch06:20869116..20869694- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9T3X5_RICCO); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00020459g0015.1 protein AED:0.19 eAED:0.19 QI:786|0.3|0.45|1|0.5|0.45|11|0|503; (*GB) gi|297850760|ref|XP_002893261.1| (e_value=0.0) hypothetical protein ARALYDRAFT_472562 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SXS2|SUT33_ARATH (e_value=0.0) Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2;; (*TAIR) AT1G23090.1 (e_value=0.0) | Symbols: AST91, SULTR3;3 | sulfate transporter 91 | chr1:8185238-8188954 REVERSE LENGTH=631;; (*ITAG) Solyc05g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2404490-2408988 transcript_region:SL2.40ch05:2404490..2408988+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00020459g0013.1 protein AED:0.26 eAED:0.26 QI:3|0.87|0.88|1|1|1|9|377|437; (*GB) gi|350539607|ref|NP_001233960.1| (e_value=5e-169) mitogen-activated protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9C9U4|MPK15_ARATH (e_value=2e-126) Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3;; (*TAIR) AT1G73670.1 (e_value=1e-127) | Symbols: ATMPK15, MPK15 | MAP kinase 15 | chr1:27700212-27703168 FORWARD LENGTH=576;; (*ITAG) Solyc05g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2439987-2443704 transcript_region:SL2.40ch05:2439987..2443704+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00020459g0017.1 protein AED:0.22 eAED:0.22 QI:408|0.73|0.66|1|0.69|0.75|24|302|842; (*GB) gi|297737698|emb|CBI26899.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=7e-42) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT2G01460.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:206136-211765 FORWARD LENGTH=955;; (*ITAG) Solyc05g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2409481-2425202 transcript_region:SL2.40ch05:2409481..2425202- go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0016301 NbS00053250g0006.1 protein AED:0.25 eAED:0.26 QI:309|0.93|0.87|1|0.8|0.87|16|189|798; (*GB) gi|359477212|ref|XP_002273166.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258488 [Vitis vinifera];; (*TAIR) AT4G16180.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr4:9165365-9170323 REVERSE LENGTH=820;; (*ITAG) Solyc01g058730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:60842920-60852142 transcript_region:SL2.40ch01:60842920..60852142- functional_description:"Os03g0310500 protein (Fragment) (AHRD V1 *-*- Q0DSF8_ORYSJ)"; NbS00012356g0003.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|575|653; (*GB) gi|255557909|ref|XP_002519983.1| (e_value=6e-126) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q2Z2E9|SCR_IPONI (e_value=2e-125) Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1;; (*TAIR) AT3G54220.1 (e_value=7e-122) | Symbols: SCR, SGR1 | GRAS family transcription factor | chr3:20070550-20072625 FORWARD LENGTH=653;; (*ITAG) Solyc10g074680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57553986-57557750 transcript_region:SL2.40ch10:57553986..57557750- functional_description:"SCARECROW (AHRD V1 *--- Q5NDC9_CUCSA); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00012356g0014.1 protein AED:0.00 eAED:0.00 QI:92|1|1|1|0|0|2|221|174; (*GB) gi|224055063|ref|XP_002298410.1| (e_value=6e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43210.1 (e_value=1e-31) | Symbols: | Excinuclease ABC, C subunit, N-terminal | chr5:17347567-17348379 FORWARD LENGTH=170;; (*ITAG) Solyc01g088030.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:74645626-74648995 transcript_region:SL2.40ch01:74645626..74648995+ go_terms:GO:0005622 functional_description:"Structure-specific endonuclease subunit slx1 (AHRD V1 *-*- D3PJZ8_9MAXI); contains Interpro domain(s) IPR000305 Excinuclease ABC, C subunit, N-terminal "; GO:0005622 NbS00012356g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|62241073|dbj|BAD93693.1| (e_value=0.0) acyltransferase-like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=3e-56) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=1e-63) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc05g039950.1.1 (e_value=6e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:47480105-47482311 transcript_region:SL2.40ch05:47480105..47482311- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00012356g0019.1 protein AED:0.14 eAED:0.14 QI:322|1|1|1|1|1|22|452|1131; (*GB) gi|225449971|ref|XP_002272290.1| (e_value=0.0) PREDICTED: protein transport protein SEC31 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5F3X8|SC31A_CHICK (e_value=7e-144) Protein transport protein Sec31A OS=Gallus gallus GN=SEC31A PE=2 SV=1;; (*TAIR) AT3G63460.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:23431009-23437241 REVERSE LENGTH=1104;; (*ITAG) Solyc01g088020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74630101-74643687 transcript_region:SL2.40ch01:74630101..74643687+ go_terms:GO:0048306 functional_description:"Protein transport protein sec31 (AHRD V1 **-- C8V1I6_EMENI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0048306 NbS00012356g0011.1 protein AED:0.63 eAED:0.64 QI:0|0|0.25|0.75|1|1|4|0|66 NbS00055033g0005.1 protein AED:0.29 eAED:0.56 QI:0|0|0|1|1|0.66|3|0|234; (*GB) gi|18410796|ref|NP_567053.1| (e_value=5e-29) putative protein kinase [Arabidopsis thaliana];; (*SWP) sp|Q9LSV3|WAKLS_ARATH (e_value=5e-16) Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1;; (*TAIR) AT3G57750.2 (e_value=1e-31) | Symbols: | Protein kinase superfamily protein | chr3:21394050-21395054 FORWARD LENGTH=334;; (*ITAG) Solyc06g060680.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35097286-35098164 transcript_region:SL2.40ch06:35097286..35098164- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase 5 (AHRD V1 **** RLK5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00055033g0007.1 protein AED:0.17 eAED:0.17 QI:304|0.77|0.8|1|0.77|0.8|10|181|290; (*GB) gi|255563296|ref|XP_002522651.1| (e_value=2e-106) carbonic anhydrase, putative [Ricinus communis];; (*SWP) sp|P17067|CAHC_PEA (e_value=2e-61) Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT4G33580.1 (e_value=6e-92) | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5 | chr4:16139406-16141363 FORWARD LENGTH=301;; (*ITAG) Solyc09g010970.2.1 (e_value=1e-147) genomic_reference:SL2.40ch09 gene_region:4321597-4325542 transcript_region:SL2.40ch09:4321597..4325542- go_terms:GO:0005515 functional_description:"Carbonic anhydrase (AHRD V1 ***- B9S9I2_RICCO); contains Interpro domain(s) IPR001765 Carbonic anhydrase "; GO:0005515 NbS00048713g0004.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0.33|3|0|374; (*GB) gi|225454416|ref|XP_002276444.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At3g61590 [Vitis vinifera];; (*SWP) sp|Q9M310|FBK77_ARATH (e_value=5e-176) F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1;; (*TAIR) AT3G61590.2 (e_value=4e-177) | Symbols: HWS | Galactose oxidase/kelch repeat superfamily protein | chr3:22792914-22794149 FORWARD LENGTH=411;; (*ITAG) Solyc01g095370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78411389-78412809 transcript_region:SL2.40ch01:78411389..78412809+ go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9I8S9_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00061844g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|70; (*ITAG) Solyc05g051810.1.1 (e_value=2e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:61339656-61339874 transcript_region:SL2.40ch05:61339656..61339874+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012971g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|381; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=1e-117) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*SWP) sp|O22042|M3K3_ARATH (e_value=8e-40) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3 PE=1 SV=1;; (*TAIR) AT4G36950.1 (e_value=3e-108) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc02g090970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47002477-47003559 transcript_region:SL2.40ch02:47002477..47003559+ go_terms:GO:0008545 functional_description:"Serine/threonine-protein kinase 24 (AHRD V1 **** STK24_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00009775g0009.1 protein AED:0.13 eAED:0.18 QI:51|0.7|0.63|1|0.7|0.54|11|0|785; (*GB) gi|359475380|ref|XP_002282068.2| (e_value=2e-111) PREDICTED: B3 domain-containing protein Os01g0234100-like [Vitis vinifera];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=2e-68) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=2e-37) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc06g034140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20397157-20399301 transcript_region:SL2.40ch06:20397157..20399301- go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os01g0234100 (AHRD V1 ***- Y1341_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00009775g0008.1 protein AED:0.36 eAED:0.36 QI:160|1|0.75|1|1|1|8|0|338; (*GB) gi|359475380|ref|XP_002282068.2| (e_value=8e-53) PREDICTED: B3 domain-containing protein Os01g0234100-like [Vitis vinifera];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=9e-33) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=8e-33) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108130.2.1 (e_value=9e-175) genomic_reference:SL2.40ch01 gene_region:87253005-87257799 transcript_region:SL2.40ch01:87253005..87257799+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 *-*- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00022137g0011.1 protein AED:0.20 eAED:0.21 QI:78|0.5|0.66|1|0.5|0.66|3|272|176; (*GB) gi|359481479|ref|XP_003632626.1| (e_value=4e-73) PREDICTED: protein PLANT CADMIUM RESISTANCE 10-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8S8T8|PCR10_ARATH (e_value=6e-62) Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1;; (*TAIR) AT2G40935.1 (e_value=5e-63) | Symbols: | PLAC8 family protein | chr2:17083199-17084216 FORWARD LENGTH=190;; (*ITAG) Solyc10g081410.1.1 (e_value=5e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61807080-61809278 transcript_region:SL2.40ch10:61807080..61809278+ functional_description:"Cell number regulator 5 (AHRD V1 **-- B4FF80_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00022137g0014.1 protein AED:0.17 eAED:0.17 QI:9|0.85|0.62|1|0.85|0.75|8|0|787; (*GB) gi|225439195|ref|XP_002269509.1| (e_value=0.0) PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc10g081420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61809625-61812997 transcript_region:SL2.40ch10:61809625..61812997- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00022137g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|1|1|1|2|217|76 NbS00022137g0016.1 protein AED:0.38 eAED:0.41 QI:2|0|0|1|0|0|2|0|256; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-56) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00056398g0003.1 protein AED:0.35 eAED:0.39 QI:0|1|0.66|1|1|1|3|0|97; (*GB) gi|224085111|ref|XP_002307496.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|P62311|LSM3_MOUSE (e_value=4e-49) U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2;; (*TAIR) AT1G76860.1 (e_value=4e-58) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98;; (*ITAG) Solyc11g005370.1.1 (e_value=6e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:296498-299974 transcript_region:SL2.40ch11:296498..299974- functional_description:"Small nuclear ribonucleoprotein LsM3 (AHRD V1 **-- D3TPY5_GLOMM); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00013244g0001.1 protein AED:0.30 eAED:0.51 QI:0|0|0|1|1|1|2|0|81; (*GB) gi|224087579|ref|XP_002308192.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|O82012|HSP12_SOLPE (e_value=8e-18) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT2G29500.1 (e_value=4e-18) | Symbols: | HSP20-like chaperones superfamily protein | chr2:12633279-12633740 REVERSE LENGTH=153;; (*ITAG) Solyc06g076540.1.1 (e_value=5e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43940957-43941421 transcript_region:SL2.40ch06:43940957..43941421- functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00013854g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|255564212|ref|XP_002523103.1| (e_value=4e-58) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=1e-13) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT1G02816.1 (e_value=5e-55) | Symbols: | Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166;; (*ITAG) Solyc09g075230.1.1 (e_value=7e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62492731-62493246 transcript_region:SL2.40ch09:62492731..62493246- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00015355g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.88|0.94|0.94|0.94|0.88|18|174|804; (*GB) gi|225463458|ref|XP_002276065.1| (e_value=0.0) PREDICTED: DNA replication licensing factor MCM3 homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9SX03|MCM33_MAIZE (e_value=0.0) DNA replication licensing factor MCM3 homolog 3 OS=Zea mays GN=ROA3 PE=2 SV=1;; (*TAIR) AT5G46280.1 (e_value=0.0) | Symbols: MCM3 | Minichromosome maintenance (MCM2/3/5) family protein | chr5:18769902-18773606 REVERSE LENGTH=776;; (*ITAG) Solyc02g070780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34965194-34971684 transcript_region:SL2.40ch02:34965194..34971684- go_terms:GO:0043140 functional_description:"DNA replication licensing factor MCM3 (AHRD V1 **** Q16NY8_AEDAE); contains Interpro domain(s) IPR008046 MCM protein 3 "; GO:0043140 NbS00015355g0014.1 protein AED:0.30 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|150; (*GB) gi|225463460|ref|XP_002276135.1| (e_value=7e-49) PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8H124|Y2446_ARATH (e_value=7e-35) Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1;; (*TAIR) AT2G34460.1 (e_value=5e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14529635-14530732 FORWARD LENGTH=280;; (*ITAG) Solyc02g070770.2.1 (e_value=4e-75) genomic_reference:SL2.40ch02 gene_region:34960477-34964329 transcript_region:SL2.40ch02:34960477..34964329- go_terms:GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- B8HW76_CYAP4); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00015355g0016.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|491; (*GB) gi|359474885|ref|XP_003631549.1| (e_value=5e-127) PREDICTED: disease resistance protein RPP8-like [Vitis vinifera];; (*SWP) sp|Q9SX38|DRL4_ARATH (e_value=6e-81) Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=2;; (*TAIR) AT1G50180.1 (e_value=4e-82) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc02g070750.1.1 (e_value=3e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34952100-34953371 transcript_region:SL2.40ch02:34952100..34953371- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00015355g0015.1 protein AED:0.33 eAED:0.59 QI:0|0|0|1|0|0|3|0|342; (*GB) gi|224075299|ref|XP_002304589.1| (e_value=2e-47) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q9FJB5|RP8L3_ARATH (e_value=3e-16) Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1;; (*TAIR) AT5G35450.1 (e_value=2e-17) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc04g009660.2.1 (e_value=1e-21) genomic_reference:SL2.40ch04 gene_region:3028988-3031950 transcript_region:SL2.40ch04:3028988..3031950- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00051845g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.90|1|1|1|11|408|1069; (*GB) gi|76880150|dbj|BAE45850.1| (e_value=0.0) DNA polymerase [Nicotiana tabacum];; (*SWP) sp|P52026|DPO1_GEOSE (e_value=1e-37) DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2;; (*TAIR) AT3G20540.1 (e_value=0.0) | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:7168261-7173357 FORWARD LENGTH=1034;; (*ITAG) Solyc07g064330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63745650-63754744 transcript_region:SL2.40ch07:63745650..63754744- go_terms:GO:0003676,GO:0006260,GO:0005622 functional_description:"DNA polymerase (AHRD V1 ***- Q3LHT0_TOBAC); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0003676,GO:0006260,GO:0005622 NbS00003820g0002.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.87|0.77|9|483|498; (*GB) gi|225446625|ref|XP_002276769.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera];; (*SWP) sp|Q65QX2|RS5_MANSM (e_value=6e-30) 30S ribosomal protein S5 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsE PE=3 SV=1;; (*TAIR) AT1G64880.1 (e_value=0.0) | Symbols: | Ribosomal protein S5 family protein | chr1:24105713-24108780 FORWARD LENGTH=515;; (*ITAG) Solyc11g008710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2887741-2892339 transcript_region:SL2.40ch11:2887741..2892339+ go_terms:GO:0005840,GO:0005622 functional_description:"30S ribosomal protein S5 (AHRD V1 *-*- C7R892_KANKD); contains Interpro domain(s) IPR000851 Ribosomal protein S5 "; GO:0005840,GO:0005622 NbS00003820g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.90|0.86|1|0.90|0.95|23|450|1080; (*GB) gi|359493759|ref|XP_002279640.2| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera];; (*SWP) sp|Q9M291|SC24C_ARATH (e_value=0.0) Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3;; (*TAIR) AT3G44340.1 (e_value=0.0) | Symbols: CEF | clone eighty-four | chr3:16011923-16019873 REVERSE LENGTH=1096;; (*ITAG) Solyc06g084210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45683639-45698182 transcript_region:SL2.40ch06:45683639..45698182+ go_terms:GO:0005515 functional_description:"Transport protein SEC24 (AHRD V1 ***- C1HAV7_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00058565g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|1|1|6|338|543; (*GB) gi|171705256|gb|ACB54686.1| (e_value=0.0) methyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q94EJ6|PMTE_ARATH (e_value=0.0) Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1;; (*TAIR) AT4G18030.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10012850-10015267 REVERSE LENGTH=621;; (*ITAG) Solyc08g077240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58331350-58338442 transcript_region:SL2.40ch08:58331350..58338442- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7MCX6_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00033416g0006.1 protein AED:0.09 eAED:0.11 QI:75|1|0|1|1|1|2|0|815; (*GB) gi|225432464|ref|XP_002277269.1| (e_value=0.0) PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Vitis vinifera];; (*SWP) sp|Q0WPJ7|RF298_ARATH (e_value=4e-163) Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1;; (*TAIR) AT4G03000.2 (e_value=3e-164) | Symbols: | RING/U-box superfamily protein | chr4:1324602-1327348 FORWARD LENGTH=814;; (*ITAG) Solyc06g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2840267-2843968 transcript_region:SL2.40ch06:2840267..2843968- go_terms:GO:0008270 functional_description:"Inhibitor of apoptosis protein (AGAP011326-PA) (AHRD V1 *--- Q7QHS1_ANOGA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00033578g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|113205163|gb|AAX95767.2| (e_value=9e-50) hypothetical protein LES1_20t00018 [Solanum lycopersicum];; (*ITAG) Solyc06g071220.1.1 (e_value=1e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:40201525-40201932 transcript_region:SL2.40ch06:40201525..40201932+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033578g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|1|1|3|0|290; (*GB) gi|122232932|sp|Q2V9B0.1|MY1R1_SOLTU (e_value=8e-117) RecName: Full=Transcription factor MYB1R1; AltName: Full=Myb-related protein R1; Short=StMYB1R-1;; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-118) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G19000.2 (e_value=5e-57) | Symbols: | Homeodomain-like superfamily protein | chr1:6561335-6562684 REVERSE LENGTH=285;; (*ITAG) Solyc06g071230.2.1 (e_value=3e-117) genomic_reference:SL2.40ch06 gene_region:40203584-40206006 transcript_region:SL2.40ch06:40203584..40206006- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** A1DR86_CATRO); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003700 NbS00024067g0007.1 protein AED:0.18 eAED:0.19 QI:163|0|0.5|1|0|0|2|0|74; (*ITAG) Solyc00g160780.2.1 (e_value=1e-28) genomic_reference:SL2.40ch00 gene_region:17728003-17729129 transcript_region:SL2.40ch00:17728003..17729129+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024067g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|0.75|4|0|194; (*GB) gi|225435249|ref|XP_002284989.1| (e_value=1e-131) PREDICTED: proteasome subunit beta type-4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q7DLR9|PSB4_ARATH (e_value=9e-127) Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2;; (*TAIR) AT1G56450.1 (e_value=7e-128) | Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246;; (*ITAG) Solyc11g069150.1.1 (e_value=2e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50834495-50838333 transcript_region:SL2.40ch11:50834495..50838333- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9IKM7_POPTR); contains Interpro domain(s) IPR016295 Proteasome endopeptidase complex, beta subunit "; GO:0005839 NbS00002743g0004.1 protein AED:0.15 eAED:0.18 QI:71|0.83|0.57|1|0.83|0.85|7|0|294; (*GB) gi|296089108|emb|CBI38811.3| (e_value=3e-138) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G61050.2 (e_value=3e-122) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc05g047710.2.1 (e_value=6e-151) genomic_reference:SL2.40ch05 gene_region:58339129-58346527 transcript_region:SL2.40ch05:58339129..58346527- go_terms:GO:0008289 functional_description:"Plant synaptotagmin (AHRD V1 **-- C5X3E4_SORBI); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00000430g0014.1 protein AED:0.04 eAED:0.04 QI:0|0.8|0.66|1|0.6|0.66|6|736|382; (*GB) gi|225448659|ref|XP_002274607.1| (e_value=4e-148) PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 [Vitis vinifera];; (*SWP) sp|B6YUU9|TRM1_THEON (e_value=2e-31) tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus onnurineus (strain NA1) GN=trm1 PE=3 SV=1;; (*TAIR) AT3G56330.1 (e_value=1e-133) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr3:20890250-20891933 FORWARD LENGTH=433;; (*ITAG) Solyc06g049090.2.1 (e_value=3e-107) genomic_reference:SL2.40ch06 gene_region:28855711-28860815 transcript_region:SL2.40ch06:28855711..28860815- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B0C738_ACAM1); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00000430g0009.1 protein AED:0.20 eAED:0.20 QI:279|0.92|0.93|1|0.78|0.73|15|311|412; (*GB) gi|52699549|gb|AAU86897.1| (e_value=0.0) glycosyl hydrolase family-like protein [Salvia miltiorrhiza];; (*SWP) sp|P14749|AGAL_CYATE (e_value=4e-159) Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=1 SV=1;; (*TAIR) AT3G56310.1 (e_value=0.0) | Symbols: | Melibiase family protein | chr3:20882886-20885745 FORWARD LENGTH=437;; (*ITAG) Solyc06g050130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28975752-28981918 transcript_region:SL2.40ch06:28975752..28981918- go_terms:GO:0004557 functional_description:"Alpha-galactosidase-like protein (AHRD V1 **** Q9LYL2_ARATH); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557 NbS00000430g0011.1 protein AED:0.34 eAED:0.34 QI:120|1|1|1|0.4|0.66|6|729|138; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=3e-92) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=9e-94) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.2 (e_value=3e-71) | Symbols: MSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=230;; (*ITAG) Solyc06g049080.2.1 (e_value=6e-91) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00000098g0004.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.2|0.5|0.8|5|0|274 NbS00028344g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|98 NbS00028344g0009.1 protein AED:0.02 eAED:0.02 QI:108|0.9|0.90|1|0.7|0.81|11|274|1104; (*GB) gi|225432806|ref|XP_002279386.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249467 [Vitis vinifera];; (*SWP) sp|Q54XJ4|Y8901_DICDI (e_value=4e-19) Probable serine/threonine-protein kinase DDB_G0278901 OS=Dictyostelium discoideum GN=DDB_G0278901 PE=3 SV=1;; (*TAIR) AT1G04210.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:1114696-1119383 FORWARD LENGTH=1112;; (*ITAG) Solyc09g082800.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63864117-63872394 transcript_region:SL2.40ch09:63864117..63872394+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00061532g0001.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|118 NbS00022697g0013.1 protein AED:0.25 eAED:0.25 QI:101|1|1|1|1|1|2|398|167; (*GB) gi|330318596|gb|AEC10965.1| (e_value=3e-72) 50S ribosomal protein L29 [Camellia sinensis];; (*SWP) sp|Q9FJP3|RK29_ARATH (e_value=1e-62) 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1;; (*TAIR) AT5G65220.1 (e_value=9e-64) | Symbols: | Ribosomal L29 family protein | chr5:26061301-26062506 FORWARD LENGTH=173;; (*ITAG) Solyc06g072470.2.1 (e_value=2e-88) genomic_reference:SL2.40ch06 gene_region:41086971-41088571 transcript_region:SL2.40ch06:41086971..41088571- go_terms:GO:0005840 functional_description:"50S ribosomal protein L29 (AHRD V1 ***- B6TS58_MAIZE); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0005840 NbS00022697g0012.1 protein AED:0.38 eAED:0.38 QI:250|1|1|1|0.75|0.8|5|328|101; (*GB) gi|225459415|ref|XP_002285820.1| (e_value=5e-23) PREDICTED: transcription factor TGA4 [Vitis vinifera];; (*SWP) sp|Q39237|TGA1_ARATH (e_value=1e-22) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT5G65210.5 (e_value=1e-23) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g072460.2.1 (e_value=2e-39) genomic_reference:SL2.40ch04 gene_region:57075743-57078562 transcript_region:SL2.40ch04:57075743..57078562+ go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00022697g0015.1 protein AED:0.46 eAED:0.84 QI:0|0|0|1|0.66|0.75|4|0|94 NbS00022697g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|224118064|ref|XP_002317723.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27660.1 (e_value=6e-57) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc06g072460.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41085510-41086622 transcript_region:SL2.40ch06:41085510..41086622+ go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0019992,GO:0020037 NbS00039888g0001.1 protein AED:0.01 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|159 NbS00022001g0006.1 protein AED:0.11 eAED:0.13 QI:362|0.71|0.5|1|0.57|0.37|8|0|622; (*GB) gi|359490578|ref|XP_002275623.2| (e_value=0.0) PREDICTED: S-type anion channel SLAH3-like [Vitis vinifera];; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=0.0) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=0.0) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc03g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2317854-2320686 transcript_region:SL2.40ch03:2317854..2320686+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00022001g0009.1 protein AED:0.49 eAED:0.49 QI:63|0|0|0.66|1|1|3|0|67 NbS00034223g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|538; (*GB) gi|224137640|ref|XP_002327176.1| (e_value=0.0) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9C626|FB37_ARATH (e_value=0.0) F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1;; (*TAIR) AT1G47056.1 (e_value=0.0) | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276103-17277659 REVERSE LENGTH=518;; (*ITAG) Solyc04g078490.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60818556-60820160 transcript_region:SL2.40ch04:60818556..60820160+ functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 *-*- B4G0B1_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00038093g0003.1 protein AED:0.11 eAED:0.11 QI:123|0.6|0.66|1|0.6|0.66|6|0|255; (*GB) gi|225453971|ref|XP_002280288.1| (e_value=1e-116) PREDICTED: uncharacterized protein LOC100248806 [Vitis vinifera];; (*TAIR) AT3G60670.1 (e_value=9e-84) | Symbols: | PLATZ transcription factor family protein | chr3:22424695-22426074 REVERSE LENGTH=245;; (*ITAG) Solyc01g091000.2.1 (e_value=7e-145) genomic_reference:SL2.40ch01 gene_region:76462988-76464294 transcript_region:SL2.40ch01:76462988..76464294- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-* D7KGI2_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0008270 NbS00050305g0001.1 protein AED:0.46 eAED:0.46 QI:72|0.8|0.5|0.83|1|1|6|0|173; (*GB) gi|21912927|emb|CAC84143.2| (e_value=4e-123) thioredoxin peroxidase [Nicotiana tabacum];; (*SWP) sp|Q6ER94|BAS1_ORYSJ (e_value=1e-119) 2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1;; (*TAIR) AT5G06290.1 (e_value=2e-120) | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin B | chr5:1919380-1921211 FORWARD LENGTH=273;; (*ITAG) Solyc10g082030.1.1 (e_value=3e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62258959-62262932 transcript_region:SL2.40ch10:62258959..62262932- go_terms:GO:0016491,GO:0045454,GO:0051920 functional_description:"Peroxiredoxin (AHRD V1 **-- Q9FE12_PHAVU); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454,GO:0051920 NbS00050305g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.85|1|1|1|7|0|217; (*GB) gi|384081612|ref|NP_001244910.1| (e_value=1e-149) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Solanum lycopersicum];; (*SWP) sp|Q8GW29|LOG7_ARATH (e_value=1e-131) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2;; (*TAIR) AT5G06300.1 (e_value=1e-132) | Symbols: | Putative lysine decarboxylase family protein | chr5:1922042-1925278 REVERSE LENGTH=217;; (*ITAG) Solyc10g082020.1.1 (e_value=3e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62254561-62258072 transcript_region:SL2.40ch10:62254561..62258072+ go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00057597g0006.1 protein AED:0.30 eAED:0.30 QI:113|1|1|1|0.83|0.84|13|251|821; (*GB) gi|297741635|emb|CBI32767.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LJT8|TKI1_ARATH (e_value=0.0) TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2;; (*TAIR) AT2G36960.3 (e_value=0.0) | Symbols: TKI1 | TSL-kinase interacting protein 1 | chr2:15523552-15527245 FORWARD LENGTH=744;; (*ITAG) Solyc09g008100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1569997-1575945 transcript_region:SL2.40ch09:1569997..1575945- go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 ***- D7LJ99_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0005515,GO:0003700 NbS00008306g0005.1 protein AED:0.01 eAED:0.01 QI:157|1|1|1|0|0.5|2|24|222; (*GB) gi|255550062|ref|XP_002516082.1| (e_value=2e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G52343.1 (e_value=1e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:19494226-19495718 REVERSE LENGTH=249;; (*ITAG) Solyc03g120180.1.1 (e_value=2e-83) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62696696-62697256 transcript_region:SL2.40ch03:62696696..62697256- functional_description:"Unknown Protein (AHRD V1)"; NbS00008306g0004.1 protein AED:0.26 eAED:0.26 QI:192|1|0.75|1|0.33|0.5|4|473|155; (*GB) gi|356526153|ref|XP_003531684.1| (e_value=2e-76) PREDICTED: protein SYS1 homolog [Glycine max];; (*SWP) sp|Q55E69|SYS1_DICDI (e_value=4e-32) Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1;; (*TAIR) AT1G79990.1 (e_value=9e-65) | Symbols: | structural molecules | chr1:30084522-30091949 FORWARD LENGTH=1135;; (*ITAG) Solyc03g120240.2.1 (e_value=1e-95) genomic_reference:SL2.40ch03 gene_region:62746908-62751403 transcript_region:SL2.40ch03:62746908..62751403+ go_terms:GO:0005515 functional_description:"SYS1 homolog (AHRD V1 ***- C1BHJ4_ONCMY); contains Interpro domain(s) IPR019185 Integral membrane protein SYS1-related "; GO:0005515 NbS00002393g0009.1 protein AED:0.11 eAED:0.11 QI:215|0.92|0.85|1|0.76|0.71|14|79|997; (*GB) gi|225461570|ref|XP_002282857.1| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At3g07100-like [Vitis vinifera];; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=0.0) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2;; (*TAIR) AT3G07100.1 (e_value=0.0) | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein transport family protein | chr3:2245689-2250077 REVERSE LENGTH=1038;; (*ITAG) Solyc02g082220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00002393g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.87|0.77|1|0.75|0.77|9|282|329; (*GB) gi|295640957|gb|ADG22608.1| (e_value=8e-174) diacylglycerol acyltransferase type 2 [Olea europaea];; (*SWP) sp|Q9ASU1|DGAT2_ARATH (e_value=3e-137) Diacylglycerol O-acyltransferase 2 OS=Arabidopsis thaliana GN=DGAT2 PE=2 SV=1;; (*TAIR) AT3G51520.1 (e_value=3e-138) | Symbols: | diacylglycerol acyltransferase family | chr3:19110739-19112518 FORWARD LENGTH=314;; (*ITAG) Solyc02g068240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32811139-32816106 transcript_region:SL2.40ch02:32811139..32816106- go_terms:GO:0004144 functional_description:"Diacylglycerol acyltransferase family (AHRD V1 **** D7LTV7_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0004144 NbS00033243g0006.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|7|335|619; (*GB) gi|147770817|emb|CAN63166.1| (e_value=0.0) hypothetical protein VITISV_040077 [Vitis vinifera];; (*SWP) sp|Q940J9|PMT8_ARATH (e_value=0.0) Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1;; (*TAIR) AT1G04430.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623;; (*ITAG) Solyc03g005600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:438634-441628 transcript_region:SL2.40ch03:438634..441628+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00033243g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.63|0.33|0.91|0.54|0.5|12|0|1061; (*GB) gi|359477742|ref|XP_002281342.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254552 [Vitis vinifera];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=4e-43) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT4G14368.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr4:8274279-8278810 REVERSE LENGTH=1106;; (*ITAG) Solyc03g005590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:425861-433082 transcript_region:SL2.40ch03:425861..433082- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- Q55CR5_DICDI); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00020724g0004.1 protein AED:0.03 eAED:0.03 QI:281|0.87|0.77|1|0.75|0.55|9|18|366; (*GB) gi|296087532|emb|CBI34121.3| (e_value=5e-92) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54750.1 (e_value=2e-61) | Symbols: | unknown protein; Has 145 Blast hits to 145 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:20264833-20268416 REVERSE LENGTH=589;; (*ITAG) Solyc01g006700.2.1 (e_value=2e-174) genomic_reference:SL2.40ch01 gene_region:1277385-1285298 transcript_region:SL2.40ch01:1277385..1285298- functional_description:"Downstream neighbor of SON (AHRD V1 *-*- Q5U2V7_RAT)"; NbS00025805g0005.1 protein AED:0.09 eAED:0.09 QI:289|0.77|0.7|1|0.44|0.5|10|0|526; (*GB) gi|204022226|dbj|BAG71198.1| (e_value=0.0) ent-kaurene oxidase 2 [Lactuca sativa];; (*SWP) sp|Q93ZB2|KO1_ARATH (e_value=0.0) Ent-kaurene oxidase, chloroplastic OS=Arabidopsis thaliana GN=KO1 PE=1 SV=2;; (*TAIR) AT5G25900.1 (e_value=0.0) | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 | chr5:9036073-9038278 FORWARD LENGTH=509;; (*ITAG) Solyc04g083160.1.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61590211-61594739 transcript_region:SL2.40ch04:61590211..61594739- go_terms:GO:0010241 functional_description:"cytochrome P450"; GO:0010241 NbS00006973g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|255554276|ref|XP_002518178.1| (e_value=3e-14) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16195.1 (e_value=1e-15) | Symbols: | Plant self-incompatibility protein S1 family | chr4:9173165-9173650 REVERSE LENGTH=161;; (*ITAG) Solyc09g011100.1.1 (e_value=7e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4428078-4428527 transcript_region:SL2.40ch09:4428078..4428527+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 -**- C7FE99_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00008521g0014.1 protein AED:0.16 eAED:0.18 QI:0|0.42|0.25|0.87|0.57|0.25|8|154|361; (*GB) gi|356515278|ref|XP_003526328.1| (e_value=5e-86) PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Glycine max];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=9e-38) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT1G61900.2 (e_value=4e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:22882561-22884722 REVERSE LENGTH=413;; (*ITAG) Solyc07g052360.1.1 (e_value=6e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58197046-58200556 transcript_region:SL2.40ch07:58197046..58200556+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00008521g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.71|1|0.66|0.57|7|161|493; (*GB) gi|225447282|ref|XP_002279330.1| (e_value=0.0) PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-124) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc07g052380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58220177-58223570 transcript_region:SL2.40ch07:58220177..58223570+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00042050g0001.1 protein AED:0.24 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|22128589|gb|AAM52340.1| (e_value=3e-92) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=3e-65) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-65) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00042050g0002.1 protein AED:0.44 eAED:0.51 QI:0|0|0|1|1|1|3|0|72; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-14) fertility restorer [Petunia x hybrida];; (*ITAG) Solyc06g007740.1.1 (e_value=5e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00009385g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|140; (*ITAG) Solyc04g053070.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00009385g0019.1 protein AED:0.15 eAED:0.15 QI:0|0.92|0.78|1|0.69|0.71|14|12|1014; (*GB) gi|359487562|ref|XP_002279731.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249389 [Vitis vinifera];; (*SWP) sp|Q5ZIX8|KDM3A_CHICK (e_value=1e-30) Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1;; (*TAIR) AT1G09060.3 (e_value=0.0) | Symbols: | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr1:2921235-2925254 REVERSE LENGTH=944;; (*ITAG) Solyc02g078790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38005510-38014354 transcript_region:SL2.40ch02:38005510..38014354+ go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7KIX8_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00009385g0021.1 protein AED:0.17 eAED:0.17 QI:161|0.93|0.94|1|0.81|0.88|17|268|743; (*GB) gi|297739262|emb|CBI28913.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=0.0) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc02g078780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37998577-38004947 transcript_region:SL2.40ch02:37998577..38004947+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00009385g0023.1 protein AED:0.29 eAED:0.29 QI:1|0|0|0.85|0.5|0.42|7|0|430; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-67) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00009385g0014.1 protein AED:0.78 eAED:0.78 QI:79|0|0.25|0.25|1|0.75|4|0|100; (*GB) gi|242035247|ref|XP_002465018.1| (e_value=1e-14) hypothetical protein SORBIDRAFT_01g030580 [Sorghum bicolor];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=3e-14) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=2e-15) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc04g078620.2.1 (e_value=2e-18) genomic_reference:SL2.40ch04 gene_region:60902088-60906206 transcript_region:SL2.40ch04:60902088..60906206+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00033236g0004.1 protein AED:0.05 eAED:0.05 QI:29|0.5|0.33|1|1|1|3|0|415; (*GB) gi|520958|emb|CAA81749.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q9STR4|1A17_ARATH (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1;; (*TAIR) AT4G26200.1 (e_value=0.0) | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate synthase 7 | chr4:13275307-13276946 FORWARD LENGTH=447;; (*ITAG) Solyc07g026900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:32131840-32133366 transcript_region:SL2.40ch07:32131840..32133366+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q43167_SOLTU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803,GO:0016847 NbS00046423g0002.1 protein AED:0.36 eAED:0.40 QI:94|0|0.5|0.75|1|1|4|275|97; (*GB) gi|1351365|sp|P48505.2|UCR11_SOLTU (e_value=5e-16) RecName: Full=Ubiquinol-cytochrome c reductase complex 6.7 kDa protein; Short=CR6;; (*SWP) sp|P48505|UCR11_SOLTU (e_value=1e-17) Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2;; (*ITAG) Solyc03g095730.2.1 (e_value=7e-13) genomic_reference:SL2.40ch03 gene_region:50349408-50352048 transcript_region:SL2.40ch03:50349408..50352048- functional_description:"Ubiquinol-cytochrome c reductase complex protein (AHRD V1 ***- B6T3C5_MAIZE)"; NbS00017741g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|1|1|4|0|877; (*GB) gi|225435343|ref|XP_002285243.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262081 [Vitis vinifera];; (*TAIR) AT5G60700.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00017741g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|224106776|ref|XP_002314281.1| (e_value=3e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60700.1 (e_value=1e-34) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=1e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00060260g0004.1 protein AED:0.04 eAED:0.04 QI:76|0|0.5|1|1|0.5|2|0|197; (*GB) gi|37910167|gb|AAO86686.1| (e_value=5e-55) transcription factor CaWRKY1 [Capsicum annuum];; (*SWP) sp|Q8VWJ2|WRK28_ARATH (e_value=4e-16) Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1;; (*TAIR) AT4G18170.1 (e_value=3e-17) | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding protein 28 | chr4:10061508-10062691 FORWARD LENGTH=318;; (*ITAG) Solyc01g079260.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:70866242-70868698 transcript_region:SL2.40ch01:70866242..70868698+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 4 (AHRD V1 ***- A7UGD1_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00020903g0004.1 protein AED:0.15 eAED:0.15 QI:229|1|1|1|1|1|11|626|312; (*GB) gi|11133821|sp|Q9XGH7.1|PP2A_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP2A catalytic subunit;; (*SWP) sp|Q9XGH7|PP2A_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G58500.1 (e_value=0.0) | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635503-21638911 REVERSE LENGTH=313;; (*ITAG) Solyc01g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:617606-624776 transcript_region:SL2.40ch01:617606..624776- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00002629g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|0|0|2|0|94; (*GB) gi|255553907|ref|XP_002517994.1| (e_value=1e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g054700.2.1 (e_value=4e-39) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00046012g0013.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.66|1|0.2|0.5|6|189|383; (*GB) gi|1087073|gb|AAB34987.1| (e_value=0.0) calmodulin-binding heat-shock protein [Nicotiana tabacum];; (*TAIR) AT5G37710.1 (e_value=1e-154) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14979159-14981400 FORWARD LENGTH=436;; (*ITAG) Solyc11g011120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4202087-4208795 transcript_region:SL2.40ch11:4202087..4208795+ go_terms:GO:0006629,GO:0016042 functional_description:"Calmodulin-binding heat-shock protein (AHRD V1 **-- Q41251_TOBAC); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629,GO:0016042 NbS00046012g0009.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|96; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-16) hypothetical protein [Nicotiana tabacum]; NbS00046012g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.4|0.33|1|0.2|0.33|6|16|310; (*GB) gi|357491991|ref|XP_003616283.1| (e_value=2e-150) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q9FHQ1|GDL80_ARATH (e_value=1e-142) GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1;; (*TAIR) AT5G37690.1 (e_value=1e-143) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:14973610-14976115 REVERSE LENGTH=356;; (*ITAG) Solyc11g011110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4194854-4197731 transcript_region:SL2.40ch11:4194854..4197731- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g37690 (AHRD V1 ***- GDL80_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00046012g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.2|1|0.75|0.8|5|487|626; (*GB) gi|147789025|emb|CAN75780.1| (e_value=0.0) hypothetical protein VITISV_012424 [Vitis vinifera];; (*SWP) sp|Q9M2C8|PP291_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1;; (*TAIR) AT3G61360.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22704630-22706126 REVERSE LENGTH=498;; (*ITAG) Solyc04g071280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:55805628-55807142 transcript_region:SL2.40ch04:55805628..55807142+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS86_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00056467g0004.1 protein AED:0.04 eAED:0.05 QI:248|0.77|0.6|1|1|1|10|268|1114; (*GB) gi|225461373|ref|XP_002282015.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252162 [Vitis vinifera];; (*TAIR) AT4G27430.2 (e_value=7e-150) | Symbols: CIP7 | COP1-interacting protein 7 | chr4:13718817-13722736 FORWARD LENGTH=1058;; (*ITAG) Solyc07g063350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63062786-63067580 transcript_region:SL2.40ch07:63062786..63067580- go_terms:GO:0016563 functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *-*- Q7GDB1_ARATH)"; GO:0016563 NbS00026583g0006.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0.25|4|0|169; (*GB) gi|225457921|ref|XP_002272757.1| (e_value=1e-60) PREDICTED: extended synaptotagmin-2 isoform 1 [Vitis vinifera];; (*TAIR) AT2G20990.3 (e_value=5e-61) | Symbols: SYTA | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=579;; (*ITAG) Solyc01g111520.2.1 (e_value=9e-66) genomic_reference:SL2.40ch01 gene_region:89504374-89512877 transcript_region:SL2.40ch01:89504374..89512877- go_terms:GO:0005509 functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005509 NbS00026583g0005.1 protein AED:0.34 eAED:0.38 QI:0|0.83|0.57|1|0.5|0.57|7|0|184; (*GB) gi|224080620|ref|XP_002306182.1| (e_value=1e-97) plant synaptotagmin [Populus trichocarpa];; (*TAIR) AT2G20990.3 (e_value=4e-93) | Symbols: SYTA | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=579;; (*ITAG) Solyc01g111520.2.1 (e_value=6e-105) genomic_reference:SL2.40ch01 gene_region:89504374-89512877 transcript_region:SL2.40ch01:89504374..89512877- go_terms:GO:0005509 functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005509 NbS00029274g0012.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.14|0.85|0.66|0.71|7|0|256; (*GB) gi|242057969|ref|XP_002458130.1| (e_value=2e-23) hypothetical protein SORBIDRAFT_03g027390 [Sorghum bicolor];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=7e-22) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT4G32551.1 (e_value=5e-23) | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931;; (*ITAG) Solyc05g026470.1.1 (e_value=3e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:41463759-41467603 transcript_region:SL2.40ch05:41463759..41467603+ go_terms:GO:0030528 functional_description:"Single-stranded DNA-binding protein 2 (AHRD V1 *--- SSBP2_MOUSE); contains Interpro domain(s) IPR008116 Sequence-specific single-strand DNA-binding protein "; GO:0030528 NbS00029274g0013.1 protein AED:0.31 eAED:0.34 QI:0|0.5|0.23|0.84|0.41|0.38|13|0|559; (*GB) gi|356563834|ref|XP_003550163.1| (e_value=3e-103) PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Glycine max];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=3e-100) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT4G32551.1 (e_value=2e-101) | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931;; (*ITAG) Solyc05g026480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:41470829-41477244 transcript_region:SL2.40ch05:41470829..41477244+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00056173g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|380; (*GB) gi|47824946|gb|AAT38720.1| (e_value=4e-96) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=5e-28) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=4e-29) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc05g007530.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2085583-2086701 transcript_region:SL2.40ch05:2085583..2086701- functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR006527 F-box associated "; NbS00029991g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0.5|0.33|3|0|792; (*GB) gi|225440386|ref|XP_002267055.1| (e_value=0.0) PREDICTED: scarecrow-like protein 9 [Vitis vinifera];; (*SWP) sp|O80933|SCL9_ARATH (e_value=0.0) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc09g010920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4259085-4261370 transcript_region:SL2.40ch09:4259085..4261370+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HBM9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00029991g0009.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|0.5|0.33|3|0|160; (*ITAG) Solyc07g066500.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:65136874-65141644 transcript_region:SL2.40ch07:65136874..65141644- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00029991g0010.1 protein AED:0.71 eAED:0.72 QI:50|0|0|0.25|1|1|4|0|229; (*ITAG) Solyc03g093090.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47718464-47722698 transcript_region:SL2.40ch03:47718464..47722698+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00028306g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|325; (*GB) gi|108743310|dbj|BAE95414.1| (e_value=0.0) mitogen-activated protein kinase kinase [Nicotiana benthamiana];; (*SWP) sp|Q8RXG3|M2K5_ARATH (e_value=8e-99) Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2;; (*TAIR) AT1G73500.1 (e_value=6e-128) | Symbols: ATMKK9, MKK9 | MAP kinase kinase 9 | chr1:27639419-27640351 REVERSE LENGTH=310;; (*ITAG) Solyc03g097920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53756873-53757880 transcript_region:SL2.40ch03:53756873..53757880+ go_terms:GO:0008545 functional_description:"Mitogen-activated protein kinase kinase (AHRD V1 **** D7NPU9_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00017386g0015.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|0.5|0.33|3|317|714; (*GB) gi|147811098|emb|CAN70168.1| (e_value=4e-110) hypothetical protein VITISV_006870 [Vitis vinifera];; (*TAIR) AT5G59020.1 (e_value=1e-78) | Symbols: | Protein of unknown function (DUF3527) | chr5:23827160-23829603 REVERSE LENGTH=780;; (*ITAG) Solyc06g076590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43959867-43962486 transcript_region:SL2.40ch06:43959867..43962486+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017386g0013.1 protein AED:0.08 eAED:0.15 QI:0|0.44|0.3|1|0.55|0.6|10|0|486; (*GB) gi|297745973|emb|CBI16029.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=5e-149) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23823099 REVERSE LENGTH=489;; (*ITAG) Solyc06g076600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43965640-43970048 transcript_region:SL2.40ch06:43965640..43970048+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase 2 (AHRD V1 *-*- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00017386g0011.1 protein AED:0.28 eAED:0.28 QI:332|1|0.5|1|1|1|2|0|258; (*GB) gi|118485524|gb|ABK94615.1| (e_value=8e-57) unknown [Populus trichocarpa];; (*TAIR) AT5G05830.1 (e_value=1e-47) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc06g076610.2.1 (e_value=8e-124) genomic_reference:SL2.40ch06 gene_region:43971460-43974405 transcript_region:SL2.40ch06:43971460..43974405- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *--- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00031104g0003.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0|0|4|0|539; (*GB) gi|359485172|ref|XP_002280055.2| (e_value=5e-158) PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA-like [Vitis vinifera];; (*SWP) sp|Q9SSD1|TMM_ARATH (e_value=6e-46) Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1;; (*TAIR) AT2G42800.1 (e_value=1e-146) | Symbols: AtRLP29, RLP29 | receptor like protein 29 | chr2:17808157-17809545 REVERSE LENGTH=462;; (*ITAG) Solyc10g007830.1.1 (e_value=1e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2039278-2040606 transcript_region:SL2.40ch10:2039278..2040606+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00056883g0002.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|61; (*GB) gi|147775956|emb|CAN69084.1| (e_value=2e-19) hypothetical protein VITISV_028171 [Vitis vinifera];; (*ITAG) Solyc05g055490.1.1 (e_value=9e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64264942-64267983 transcript_region:SL2.40ch05:64264942..64267983+ go_terms:GO:0030599 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0030599 NbS00056883g0003.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|1786136|dbj|BAA19111.1| (e_value=1e-15) PEThy;ZPT2-6 [Petunia x hybrida]; NbS00019047g0011.1 protein AED:0.35 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|216; (*GB) gi|3024506|sp|Q40523.1|RB11A_TOBAC (e_value=7e-140) RecName: Full=Ras-related protein Rab11A;; (*SWP) sp|Q40523|RB11A_TOBAC (e_value=2e-141) Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=6e-132) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc06g076450.2.1 (e_value=9e-140) genomic_reference:SL2.40ch06 gene_region:43888198-43890284 transcript_region:SL2.40ch06:43888198..43890284- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00019047g0001.1 protein AED:0.10 eAED:0.10 QI:195|1|0.75|1|0.66|0.5|4|486|98; (*GB) gi|255558940|ref|XP_002520493.1| (e_value=7e-63) Transcription elongation factor B polypeptide, putative [Ricinus communis];; (*SWP) sp|P83941|ELOC_RAT (e_value=1e-25) Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1;; (*TAIR) AT5G59140.1 (e_value=1e-56) | Symbols: | BTB/POZ domain-containing protein | chr5:23874696-23875631 REVERSE LENGTH=96;; (*ITAG) Solyc06g076460.2.1 (e_value=2e-47) genomic_reference:SL2.40ch06 gene_region:43894492-43897706 transcript_region:SL2.40ch06:43894492..43897706+ go_terms:GO:0005515 functional_description:"Transcription elongation factor B polypeptide 1 (AHRD V1 ***- Q1HQ04_BOMMO); contains Interpro domain(s) IPR011333 BTB/POZ fold "; GO:0005515 NbS00019047g0014.1 protein AED:0.42 eAED:0.49 QI:209|1|0.5|1|1|1|2|0|66 NbS00019047g0017.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|317; (*GB) gi|224059428|ref|XP_002299844.1| (e_value=2e-130) metal tolerance protein [Populus trichocarpa];; (*SWP) sp|Q6DBM8|MTPB_ARATH (e_value=1e-100) Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1;; (*TAIR) AT2G29410.1 (e_value=8e-102) | Symbols: MTPB1, ATMTPB1 | metal tolerance protein B1 | chr2:12616810-12617937 FORWARD LENGTH=375;; (*ITAG) Solyc06g076440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43886333-43887454 transcript_region:SL2.40ch06:43886333..43887454+ go_terms:GO:0015633 functional_description:"Zinc-transporter-like protein (AHRD V1 **** B2BY01_9BRAS); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0015633 NbS00006275g0116.1 protein AED:0.33 eAED:0.33 QI:0|0.85|0.75|1|0.71|0.87|8|0|471 NbS00006275g0122.1 protein AED:0.13 eAED:0.14 QI:80|0.85|0.66|1|0.5|0.46|15|0|1046 NbS00006275g0120.1 protein AED:0.15 eAED:0.15 QI:122|0.81|0.91|1|0.63|0.66|12|381|371 NbS00006275g0123.1 protein AED:0.18 eAED:0.18 QI:196|1|0.6|1|1|1|5|0|473 NbS00006275g0119.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.83|0.84|19|521|813 NbS00012879g0005.1 protein AED:0.32 eAED:0.41 QI:427|0.5|0.44|1|0.37|0.44|9|401|173; (*GB) gi|5669656|gb|AAD46413.1|AF096263_1 (e_value=3e-54) ER33 protein [Solanum lycopersicum];; (*TAIR) AT1G05710.2 (e_value=7e-38) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1716198-1717023 FORWARD LENGTH=171;; (*ITAG) Solyc08g014120.2.1 (e_value=2e-61) genomic_reference:SL2.40ch08 gene_region:3679998-3682484 transcript_region:SL2.40ch08:3679998..3682484+ go_terms:GO:0030528 functional_description:"BHLH transcription factor (AHRD V1 **** Q7XJU2_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00026083g0009.1 protein AED:0.18 eAED:0.19 QI:0|1|0|1|1|1|2|0|200; (*GB) gi|359492645|ref|XP_002281995.2| (e_value=2e-60) PREDICTED: cytochrome P450 82A3 [Vitis vinifera];; (*SWP) sp|O49858|C82A3_SOYBN (e_value=1e-50) Cytochrome P450 82A3 OS=Glycine max GN=CYP82A3 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=2e-48) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc04g079680.2.1 (e_value=4e-80) genomic_reference:SL2.40ch04 gene_region:61643971-61645817 transcript_region:SL2.40ch04:61643971..61645817+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026083g0007.1 protein AED:0.33 eAED:0.41 QI:47|0|0.5|1|0|0|2|140|45 NbS00026083g0008.1 protein AED:0.51 eAED:0.56 QI:0|0|0|1|0|0|2|0|64; (*ITAG) Solyc04g079640.2.1 (e_value=3e-17) genomic_reference:SL2.40ch04 gene_region:61625624-61627550 transcript_region:SL2.40ch04:61625624..61627550+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006672g0036.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.25|0.4|5|0|575; (*GB) gi|57233497|gb|AAW48299.1| (e_value=0.0) potato late blight resistance protein R3a [Solanum tuberosum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=6e-78) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=5e-79) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g007630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006672g0030.1 protein AED:0.30 eAED:0.30 QI:233|0.5|0.42|1|0.5|0.71|7|0|734; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=0.0) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|O80983|FTSH4_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2;; (*TAIR) AT2G26140.1 (e_value=0.0) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc11g069950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51629743-51639001 transcript_region:SL2.40ch11:51629743..51639001+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00006672g0040.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.2|1|0.75|1|5|0|287; (*GB) gi|255575687|ref|XP_002528743.1| (e_value=1e-104) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|A8IZG4|CIAO1_CHLRE (e_value=1e-71) Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1;; (*TAIR) AT2G26060.2 (e_value=5e-96) | Symbols: emb1345 | Transducin/WD40 repeat-like superfamily protein | chr2:11102400-11105081 FORWARD LENGTH=337;; (*ITAG) Solyc09g074400.2.1 (e_value=6e-122) genomic_reference:SL2.40ch09 gene_region:61691051-61700245 transcript_region:SL2.40ch09:61691051..61700245- go_terms:GO:0045505 functional_description:"WD repeat protein 39 (AHRD V1 **-- C1BHI0_ONCMY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00006672g0022.1 protein AED:0.53 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|78 NbS00006672g0043.1 protein AED:0.05 eAED:0.05 QI:277|1|1|1|0.83|0.71|7|556|313; (*GB) gi|225429560|ref|XP_002279873.1| (e_value=4e-138) PREDICTED: uncharacterized protein LOC100255893 [Vitis vinifera];; (*TAIR) AT5G11810.1 (e_value=3e-105) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3808739-3810440 FORWARD LENGTH=306;; (*ITAG) Solyc11g070020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51669815-51673400 transcript_region:SL2.40ch11:51669815..51673400- functional_description:"Unknown Protein (AHRD V1)"; NbS00006672g0042.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|0|0.33|3|0|554; (*GB) gi|359475948|ref|XP_002279173.2| (e_value=7e-164) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Vitis vinifera];; (*SWP) sp|Q9M9C5|Y1680_ARATH (e_value=4e-104) Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1;; (*TAIR) AT1G68400.1 (e_value=3e-105) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr1:25646401-25648916 REVERSE LENGTH=670;; (*ITAG) Solyc11g069960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51643713-51646669 transcript_region:SL2.40ch11:51643713..51646669- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00006672g0032.1 protein AED:0.23 eAED:0.23 QI:286|1|1|1|0.88|0.8|10|281|387; (*GB) gi|37379419|gb|AAQ91380.1| (e_value=0.0) UDP-D-apiose/UDP-D-xylose synthase [Nicotiana benthamiana];; (*SWP) sp|Q6D2F1|ARNA_ERWCT (e_value=5e-69) Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1;; (*TAIR) AT1G08200.1 (e_value=0.0) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc01g009420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3621816-3626739 transcript_region:SL2.40ch01:3621816..3626739+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0044237,GO:0008152 NbS00006672g0035.1 protein AED:0.42 eAED:0.49 QI:103|0.5|0.6|1|0.5|0.6|5|0|224; (*GB) gi|388496768|gb|AFK36450.1| (e_value=1e-64) unknown [Lotus japonicus];; (*SWP) sp|Q3B8G0|CA123_XENLA (e_value=1e-28) UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1;; (*TAIR) AT4G32930.1 (e_value=2e-58) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15898878-15900185 FORWARD LENGTH=167;; (*ITAG) Solyc11g070050.1.1 (e_value=4e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51686851-51692216 transcript_region:SL2.40ch11:51686851..51692216- functional_description:"DUF866 domain protein (AHRD V1 **-- A1C7N7_ASPCL); contains Interpro domain(s) IPR008584 Protein of unknown function DUF866, eukaryotic "; NbS00006672g0038.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|3|0|398; (*GB) gi|389607304|dbj|BAM17523.1| (e_value=5e-103) N' tobamovirus resistance protein, partial [Nicotiana tabacum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=7e-34) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=5e-35) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g069990.1.1 (e_value=2e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51661763-51664081 transcript_region:SL2.40ch11:51661763..51664081- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00029853g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|0.5|0|0.5|2|189|258; (*GB) gi|224105305|ref|XP_002313761.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g110350.2.1 (e_value=4e-91) genomic_reference:SL2.40ch01 gene_region:88843039-88844127 transcript_region:SL2.40ch01:88843039..88844127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003400g0001.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|89|412; (*GB) gi|13877739|gb|AAK43947.1|AF370132_1 (e_value=5e-66) unknown protein [Arabidopsis thaliana];; (*SWP) sp|P49314|ROC2_NICPL (e_value=3e-12) 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT5G51300.3 (e_value=1e-68) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=4e-113) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00003400g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|302142904|emb|CBI20199.3| (e_value=8e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CO44|BBP_CRYNJ (e_value=3e-21) Branchpoint-bridging protein OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=BBP PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=4e-55) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00017798g0006.1 protein AED:0.01 eAED:0.01 QI:125|1|1|1|0.8|1|6|345|599; (*GB) gi|255585668|ref|XP_002533519.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G65540.1 (e_value=9e-171) | Symbols: | unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). | chr5:26195710-26198112 FORWARD LENGTH=605;; (*ITAG) Solyc05g051370.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60779163-60786323 transcript_region:SL2.40ch05:60779163..60786323- functional_description:"Genomic DNA chromosome 5 TAC clone K21L13 (AHRD V1 ***- Q9LSM1_ARATH)"; NbS00015506g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|74 NbS00015506g0003.1 protein AED:0.36 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|100 NbS00015506g0009.1 protein AED:0.16 eAED:0.16 QI:0|1|0.87|1|0.85|0.87|8|0|693; (*GB) gi|223928077|gb|ACN23794.1| (e_value=0.0) sulfite reductase [Nicotiana benthamiana];; (*SWP) sp|O82802|SIR1_TOBAC (e_value=0.0) Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum GN=SIR1 PE=1 SV=1;; (*TAIR) AT5G04590.1 (e_value=0.0) | Symbols: SIR | sulfite reductase | chr5:1319404-1322298 FORWARD LENGTH=642;; (*ITAG) Solyc11g065620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48223149-48227503 transcript_region:SL2.40ch11:48223149..48227503+ go_terms:GO:0016002,GO:0005507 functional_description:"Sulfite reductase (AHRD V1 **** O82802_TOBAC); contains Interpro domain(s) IPR011787 Sulphite reductase, ferredoxin dependent "; GO:0016002,GO:0005507 NbS00000240g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|297819846|ref|XP_002877806.1| (e_value=6e-28) hypothetical protein ARALYDRAFT_485498 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SD02|P2C47_ARATH (e_value=2e-29) Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1;; (*TAIR) AT3G51470.1 (e_value=1e-30) | Symbols: | Protein phosphatase 2C family protein | chr3:19097924-19099244 REVERSE LENGTH=361;; (*ITAG) Solyc00g007190.2.1 (e_value=2e-30) genomic_reference:SL2.40ch00 gene_region:6787016-6792049 transcript_region:SL2.40ch00:6787016..6792049- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00007821g0008.1 protein AED:0.34 eAED:0.34 QI:199|1|1|1|1|1|2|280|263; (*GB) gi|225444734|ref|XP_002278077.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100264608 [Vitis vinifera];; (*TAIR) AT3G43850.1 (e_value=4e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15702085-15704152 REVERSE LENGTH=270;; (*ITAG) Solyc05g025900.2.1 (e_value=6e-76) genomic_reference:SL2.40ch05 gene_region:37515695-37518190 transcript_region:SL2.40ch05:37515695..37518190- functional_description:"MTD1 (AHRD V1 *-*- Q9LLM3_MEDTR)"; NbS00007821g0010.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|62 NbS00011786g0005.1 protein AED:0.04 eAED:0.07 QI:0|0.33|0|0.5|0|0.5|4|0|1034; (*GB) gi|225427514|ref|XP_002264009.1| (e_value=0.0) PREDICTED: replication protein A 70 kDa DNA-binding subunit-like [Vitis vinifera];; (*SWP) sp|Q6NY74|RFA1_DANRE (e_value=1e-92) Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1;; (*TAIR) AT5G45400.1 (e_value=0.0) | Symbols: RPA70C, ATRPA70C | Replication factor-A protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=853;; (*ITAG) Solyc08g075840.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57089376-57093498 transcript_region:SL2.40ch08:57089376..57093498+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 *-** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0003697 NbS00049035g0005.1 protein AED:0.34 eAED:0.34 QI:32|0.88|0.8|1|0.77|0.8|10|0|513; (*GB) gi|2582381|gb|AAC49874.1| (e_value=0.0) cation-chloride co-transporter [Nicotiana tabacum];; (*SWP) sp|Q2UVJ5|CCC1_ARATH (e_value=0.0) Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1;; (*TAIR) AT1G30450.2 (e_value=0.0) | Symbols: CCC1, ATCCC1, HAP5 | cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975;; (*ITAG) Solyc02g070290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34640637-34656865 transcript_region:SL2.40ch02:34640637..34656865- go_terms:GO:0015379 functional_description:"Solute carrier family 12 (Potassium/chloride transporters) member 6 (AHRD V1 **** Q0IHX0_XENTR); contains Interpro domain(s) IPR004842 Na/K/Cl co-transporter superfamily "; GO:0015379 NbS00027572g0109.1 protein AED:0.23 eAED:0.23 QI:175|1|1|1|0|0.5|2|922|164 NbS00027572g0108.1 protein AED:0.25 eAED:0.45 QI:0|0|0.5|1|0|0|2|430|83 NbS00059816g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|240; (*GB) gi|357518027|ref|XP_003629302.1| (e_value=2e-31) Major cold-shock protein [Medicago truncatula];; (*SWP) sp|O42395|CNBP_CHICK (e_value=5e-14) Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1;; (*TAIR) AT4G36020.1 (e_value=1e-28) | Symbols: CSDP1 | cold shock domain protein 1 | chr4:17043443-17044342 REVERSE LENGTH=299;; (*ITAG) Solyc03g033500.2.1 (e_value=8e-59) genomic_reference:SL2.40ch03 gene_region:9319652-9320822 transcript_region:SL2.40ch03:9319652..9320822- go_terms:GO:0003723,GO:0003697,GO:0003690 functional_description:"Cold shock protein-1 (AHRD V1 *-*- Q8LPA7_WHEAT); contains Interpro domain(s) IPR002059 Cold-shock protein, DNA-binding "; GO:0003723,GO:0003697,GO:0003690 NbS00006365g0017.1 protein AED:0.06 eAED:0.06 QI:163|1|1|1|1|1|12|373|450; (*GB) gi|255567660|ref|XP_002524809.1| (e_value=0.0) elongation factor tu, putative [Ricinus communis];; (*SWP) sp|Q9ZT91|EFTM_ARATH (e_value=0.0) Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1;; (*TAIR) AT4G02930.1 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr4:1295751-1298354 REVERSE LENGTH=454;; (*ITAG) Solyc09g073000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61156838-61164570 transcript_region:SL2.40ch09:61156838..61164570- go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** B9SFP0_RICCO); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00006365g0013.1 protein AED:0.29 eAED:0.29 QI:18|0.5|0.6|1|0.75|0.6|5|0|322; (*GB) gi|225436904|ref|XP_002274278.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100259706 [Vitis vinifera];; (*TAIR) AT4G02920.1 (e_value=5e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292816-1294670 FORWARD LENGTH=418;; (*ITAG) Solyc09g072990.2.1 (e_value=3e-137) genomic_reference:SL2.40ch09 gene_region:61150679-61156433 transcript_region:SL2.40ch09:61150679..61156433+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006365g0018.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|5|0|475; (*GB) gi|296086694|emb|CBI32329.3| (e_value=1e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M8J9|BPM2_ARATH (e_value=5e-140) BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1;; (*TAIR) AT3G06190.1 (e_value=4e-141) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406;; (*ITAG) Solyc09g072980.2.1 (e_value=7e-177) genomic_reference:SL2.40ch09 gene_region:61139516-61145785 transcript_region:SL2.40ch09:61139516..61145785- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00006365g0107.1 protein AED:0.24 eAED:0.24 QI:257|1|1|1|0.5|0.33|3|191|119 NbS00006365g0101.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|240 NbS00006365g0110.1 protein AED:0.28 eAED:0.28 QI:0|0.85|0.87|1|0.71|0.75|8|350|223 NbS00007055g0012.1 protein AED:0.21 eAED:0.22 QI:110|0.2|0|0.83|0.6|0.5|6|0|655; (*GB) gi|359477907|ref|XP_002270439.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Vitis vinifera];; (*SWP) sp|Q9MAT2|PPR10_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1;; (*TAIR) AT1G04840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1362867-1364962 REVERSE LENGTH=665;; (*ITAG) Solyc09g092050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66563914-66566873 transcript_region:SL2.40ch09:66563914..66566873+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KE83_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00007055g0017.1 protein AED:0.28 eAED:0.31 QI:180|0.77|0.7|1|0.66|0.7|10|0|497; (*GB) gi|82621142|gb|ABB86259.1| (e_value=0.0) RabGAP/TBC domain-containing protein-like [Solanum tuberosum];; (*SWP) sp|Q9NVG8|TBC13_HUMAN (e_value=2e-46) TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3;; (*TAIR) AT4G13730.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:7970299-7974055 FORWARD LENGTH=449;; (*ITAG) Solyc09g092070.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66571826-66579705 transcript_region:SL2.40ch09:66571826..66579705+ go_terms:GO:0005515,GO:0005096 functional_description:"TBC1 domain family member 13 (AHRD V1 ***- D3BTH5_POLPA); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005515,GO:0005096 NbS00007055g0004.1 protein AED:0.34 eAED:0.38 QI:0|0|0|1|1|1|3|0|264; (*GB) gi|190607707|gb|ACE79512.1| (e_value=2e-24) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=8e-16) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=2e-13) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc09g098210.1.1 (e_value=3e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67341278-67344165 transcript_region:SL2.40ch09:67341278..67344165+ go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00007055g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|92; (*ITAG) Solyc06g064750.1.1 (e_value=8e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36739600-36741891 transcript_region:SL2.40ch06:36739600..36741891+ go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00012856g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.4|0.66|0.7|10|0|432; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00038801g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.25|4|0|248; (*GB) gi|224103065|ref|XP_002312911.1| (e_value=4e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=7e-34) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=5e-35) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112100.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:89962554-89964946 transcript_region:SL2.40ch01:89962554..89964946- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00038801g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|1|1|4|0|355; (*GB) gi|338815365|gb|AEJ08745.1| (e_value=0.0) RSI3 [Solanum tuberosum];; (*SWP) sp|O23006|LYM2_ARATH (e_value=2e-99) LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1;; (*TAIR) AT2G17120.1 (e_value=2e-100) | Symbols: LYM2 | lysm domain GPI-anchored protein 2 precursor | chr2:7459156-7460648 FORWARD LENGTH=350;; (*ITAG) Solyc01g112080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89951336-89953057 transcript_region:SL2.40ch01:89951336..89953057+ go_terms:GO:0016998 functional_description:"LysM-domain GPI-anchored protein (AHRD V1 **-- Q4VVD8_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00038801g0007.1 protein AED:0.21 eAED:0.21 QI:261|0.86|0.87|1|0.66|0.62|16|420|650; (*GB) gi|297744535|emb|CBI37797.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SVE7|MATE3_ARATH (e_value=1e-166) MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2;; (*TAIR) AT4G38380.1 (e_value=1e-167) | Symbols: | MATE efflux family protein | chr4:17971855-17974787 REVERSE LENGTH=560;; (*ITAG) Solyc01g112090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89954210-89962191 transcript_region:SL2.40ch01:89954210..89962191+ go_terms:GO:0016020 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q2QYU0_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00007414g0016.1 protein AED:0.21 eAED:0.21 QI:175|0.8|0.72|1|0.7|0.81|11|194|461; (*GB) gi|147784740|emb|CAN74796.1| (e_value=0.0) hypothetical protein VITISV_000290 [Vitis vinifera];; (*SWP) sp|Q6P502|TCPG_RAT (e_value=6e-141) T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1;; (*TAIR) AT5G26360.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00007414g0015.1 protein AED:0.24 eAED:0.24 QI:192|0.9|0.90|1|0.6|0.81|11|500|362; (*GB) gi|225430908|ref|XP_002276691.1| (e_value=9e-147) PREDICTED: putative RNA-binding protein Luc7-like 2 [Vitis vinifera];; (*SWP) sp|Q9CYI4|LUC7L_MOUSE (e_value=1e-19) Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2;; (*TAIR) AT3G03340.1 (e_value=7e-145) | Symbols: UNE6 | LUC7 related protein | chr3:786439-789762 FORWARD LENGTH=402;; (*ITAG) Solyc05g056280.2.1 (e_value=3e-164) genomic_reference:SL2.40ch05 gene_region:64772180-64781152 transcript_region:SL2.40ch05:64772180..64781152+ go_terms:GO:0003729 functional_description:"RNA-binding protein Luc7-like 2 (AHRD V1 **** B6TXA2_MAIZE); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0003729 NbS00007414g0019.1 protein AED:0.23 eAED:0.23 QI:508|1|0.8|1|0.75|0.6|5|286|477; (*GB) gi|225463171|ref|XP_002267329.1| (e_value=4e-96) PREDICTED: uncharacterized protein LOC100263151 [Vitis vinifera];; (*TAIR) AT5G23520.1 (e_value=7e-74) | Symbols: | smr (Small MutS Related) domain-containing protein | chr5:7929591-7931296 REVERSE LENGTH=435;; (*ITAG) Solyc05g056320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64800614-64804103 transcript_region:SL2.40ch05:64800614..64804103- functional_description:"CCCH zinc finger and SMR domain-containing protein (AHRD V1 *--- C1G3N1_PARBD); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00007414g0023.1 protein AED:0.39 eAED:0.39 QI:0|1|0.33|1|0|0|3|0|152; (*GB) gi|312231980|gb|ADQ53451.1| (e_value=2e-94) plastid thioredoxin F precursor [Nicotiana tabacum];; (*SWP) sp|Q9XFH9|TRXF2_ARATH (e_value=4e-57) Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1;; (*TAIR) AT5G16400.1 (e_value=3e-58) | Symbols: TRXF2, ATF2 | thioredoxin F2 | chr5:5363905-5365249 REVERSE LENGTH=185;; (*ITAG) Solyc05g056300.2.1 (e_value=3e-84) genomic_reference:SL2.40ch05 gene_region:64787697-64790265 transcript_region:SL2.40ch05:64787697..64790265- go_terms:GO:0008047 functional_description:"Thioredoxin-like protein (AHRD V1 *-*- D8UJJ9_VOLCA); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0008047 NbS00007414g0017.1 protein AED:0.42 eAED:0.42 QI:0|0.33|0|0.75|0.66|0.5|4|0|248; (*GB) gi|350538011|ref|NP_001234322.1| (e_value=4e-42) biotin carboxylase carrier protein [Solanum lycopersicum];; (*TAIR) AT5G15530.1 (e_value=8e-25) | Symbols: BCCP2, CAC1-B | biotin carboxyl carrier protein 2 | chr5:5038955-5040437 FORWARD LENGTH=255;; (*ITAG) Solyc05g056290.2.1 (e_value=8e-45) genomic_reference:SL2.40ch05 gene_region:64781643-64787587 transcript_region:SL2.40ch05:64781643..64787587+ go_terms:GO:0003989 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** B9Z6D8_9NEIS); contains Interpro domain(s) IPR000089 Biotin/lipoyl attachment IPR001882 Biotin-binding site "; GO:0003989 NbS00000644g0007.1 protein AED:0.18 eAED:0.18 QI:946|1|0.75|1|1|1|4|156|358; (*GB) gi|296090414|emb|CBI40233.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g007510.1.1 (e_value=2e-92) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1769708-1774639 transcript_region:SL2.40ch11:1769708..1774639+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043503g0009.1 protein AED:0.05 eAED:0.05 QI:2086|1|0.75|1|1|1|4|0|221; (*GB) gi|3851640|gb|AAC72387.1| (e_value=1e-112) chaperone GrpE type 2 [Nicotiana tabacum];; (*SWP) sp|Q3SW78|GRPE_NITWN (e_value=7e-35) Protein grpE OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=grpE PE=3 SV=1;; (*TAIR) AT4G26780.1 (e_value=8e-85) | Symbols: AR192 | Co-chaperone GrpE family protein | chr4:13485066-13486560 REVERSE LENGTH=327;; (*ITAG) Solyc12g014470.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5447836-5450290 transcript_region:SL2.40ch12:5447836..5450290+ go_terms:GO:0005524,GO:0005507 functional_description:"Protein grpE (AHRD V1 *-*- Q1QRU3_NITHX); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005524,GO:0005507 NbS00043503g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|467; (*GB) gi|11071974|dbj|BAB17320.1| (e_value=0.0) elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=1e-114) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT5G55180.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22388834-22390550 FORWARD LENGTH=460;; (*ITAG) Solyc12g014420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5390285-5392254 transcript_region:SL2.40ch12:5390285..5392254+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00043503g0008.1 protein AED:0.30 eAED:0.30 QI:120|0.66|1|1|0.66|1|4|273|175; (*GB) gi|225460857|ref|XP_002277568.1| (e_value=5e-23) PREDICTED: uncharacterized protein LOC100257277 [Vitis vinifera];; (*TAIR) AT4G22320.1 (e_value=4e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc12g014480.1.1 (e_value=2e-74) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5450727-5455449 transcript_region:SL2.40ch12:5450727..5455449- functional_description:"cDNA clone 002-156-B04 full insert sequence (AHRD V1 *-*- B7F1Y4_ORYSJ)"; NbS00042379g0005.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|0|0|5|0|402; (*GB) gi|297734140|emb|CBI15387.3| (e_value=2e-20) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g049700.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57376807-57379383 transcript_region:SL2.40ch07:57376807..57379383- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00026866g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|242; (*GB) gi|147792212|emb|CAN72981.1| (e_value=2e-62) hypothetical protein VITISV_009032 [Vitis vinifera];; (*SWP) sp|Q8LC79|GAT18_ARATH (e_value=1e-39) GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2;; (*TAIR) AT3G50870.1 (e_value=8e-41) | Symbols: MNP, HAN, GATA18 | GATA type zinc finger transcription factor family protein | chr3:18911112-18912369 FORWARD LENGTH=295;; (*ITAG) Solyc02g062760.2.1 (e_value=1e-90) genomic_reference:SL2.40ch02 gene_region:29117051-29118046 transcript_region:SL2.40ch02:29117051..29118046+ go_terms:GO:0030374 functional_description:"GATA transcription factor 19 (AHRD V1 *-** B6TS85_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0030374 NbS00026866g0015.1 protein AED:0.02 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|130; (*GB) gi|255561174|ref|XP_002521599.1| (e_value=2e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G66780.1 (e_value=8e-29) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26663627-26664196 FORWARD LENGTH=121;; (*ITAG) Solyc02g062770.1.1 (e_value=1e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29127828-29129196 transcript_region:SL2.40ch02:29127828..29129196- functional_description:"Late embryogenesis abundant protein (AHRD V1 *-*- Q3I3Y9_PICGL)"; NbS00026866g0005.1 protein AED:0.07 eAED:0.07 QI:294|0.66|0.81|1|0.93|0.93|16|0|741; (*GB) gi|224094755|ref|XP_002310223.1| (e_value=0.0) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q9XFH4|DDM1_ARATH (e_value=0.0) ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1;; (*TAIR) AT5G66750.1 (e_value=0.0) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764;; (*ITAG) Solyc02g062780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29133439-29143895 transcript_region:SL2.40ch02:29133439..29143895- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 6 (AHRD V1 **-* CHD6_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00026866g0017.1 protein AED:0.27 eAED:0.28 QI:117|0.8|0.83|1|1|1|6|0|234; (*GB) gi|225431332|ref|XP_002277720.1| (e_value=2e-98) PREDICTED: methyltransferase-like protein 23 [Vitis vinifera];; (*SWP) sp|Q6DJF8|MET23_XENLA (e_value=4e-31) Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1;; (*TAIR) AT1G63855.3 (e_value=4e-87) | Symbols: | Putative methyltransferase family protein | chr1:23699557-23700954 REVERSE LENGTH=196;; (*ITAG) Solyc02g061950.2.1 (e_value=6e-137) genomic_reference:SL2.40ch02 gene_region:28075439-28077641 transcript_region:SL2.40ch02:28075439..28077641- functional_description:"C17orf95 protein (Fragment) (AHRD V1 *--- Q8N712_HUMAN); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00056587g0004.1 protein AED:0.29 eAED:0.29 QI:123|0.5|1|1|0|0|3|562|56 NbS00056587g0006.1 protein AED:0.24 eAED:0.24 QI:289|0.62|0.44|1|0.62|0.55|9|0|358; (*GB) gi|359489402|ref|XP_002272931.2| (e_value=1e-134) PREDICTED: peroxisome biogenesis protein 16-like [Vitis vinifera];; (*SWP) sp|Q8S8S1|PEX16_ARATH (e_value=7e-116) Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1;; (*TAIR) AT2G45690.1 (e_value=5e-117) | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367;; (*ITAG) Solyc06g074460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42465763-42469550 transcript_region:SL2.40ch06:42465763..42469550- functional_description:"Peroxisomal membrane protein PEX16 (AHRD V1 ***- C5FRH5_NANOT); contains Interpro domain(s) IPR013919 Peroxisome membrane protein, Pex16 "; NbS00004194g0008.1 protein AED:0.11 eAED:0.11 QI:199|0.90|0.91|1|0.63|0.58|12|729|491; (*GB) gi|10798892|gb|AAG23129.1|AF198259_1 (e_value=0.0) diacylglycerol kinase [Solanum lycopersicum];; (*SWP) sp|O75912|DGKI_HUMAN (e_value=1e-45) Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1;; (*TAIR) AT2G20900.2 (e_value=0.0) | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491;; (*ITAG) Solyc10g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2712740-2720597 transcript_region:SL2.40ch10:2712740..2720597- go_terms:GO:0007205 functional_description:"Diacylglycerol kinase (AHRD V1 ***- Q9FVD1_SOLLC); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0007205 NbS00009445g0005.1 protein AED:0.26 eAED:0.26 QI:550|0.75|0.77|1|0.62|0.55|9|0|661; (*GB) gi|255558846|ref|XP_002520446.1| (e_value=0.0) ceramidase, putative [Ricinus communis];; (*SWP) sp|Q304B9|NCASE_ARATH (e_value=0.0) Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1;; (*TAIR) AT1G07380.1 (e_value=0.0) | Symbols: | Neutral/alkaline non-lysosomal ceramidase | chr1:2264829-2268306 REVERSE LENGTH=779;; (*ITAG) Solyc03g006140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:791650-799108 transcript_region:SL2.40ch03:791650..799108- go_terms:GO:0017040 functional_description:"Neutral ceramidase (AHRD V1 **** A9YFM2_WHEAT); contains Interpro domain(s) IPR006823 Neutral/alkaline nonlysosomal ceramidase "; GO:0017040 NbS00028791g0001.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|356507738|ref|XP_003522621.1| (e_value=1e-178) PREDICTED: probable sugar phosphate/phosphate translocator At5g25400-like [Glycine max];; (*SWP) sp|Q9SKJ7|PT225_ARATH (e_value=5e-180) Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1;; (*TAIR) AT2G25520.1 (e_value=0.0) | Symbols: | Drug/metabolite transporter superfamily protein | chr2:10860950-10861993 FORWARD LENGTH=347;; (*ITAG) Solyc08g060940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:43005135-43006190 transcript_region:SL2.40ch08:43005135..43006190- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00028791g0005.1 protein AED:0.23 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|308; (*GB) gi|224143132|ref|XP_002324857.1| (e_value=2e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=2e-62) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=1e-63) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc08g060930.2.1 (e_value=7e-84) genomic_reference:SL2.40ch08 gene_region:42999579-43000280 transcript_region:SL2.40ch08:42999579..43000280+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6T2M3_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00028791g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|0|1|0|145; (*GB) gi|350537355|ref|NP_001234034.1| (e_value=1e-63) IDS4-like protein [Solanum lycopersicum];; (*SWP) sp|O48781|SPX2_ARATH (e_value=8e-38) SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1;; (*TAIR) AT2G26660.1 (e_value=6e-39) | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:11338932-11340703 FORWARD LENGTH=287;; (*ITAG) Solyc08g060920.2.1 (e_value=1e-68) genomic_reference:SL2.40ch08 gene_region:42987091-42988595 transcript_region:SL2.40ch08:42987091..42988595+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00011319g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|0.5|0.33|3|0|140; (*ITAG) Solyc07g015850.1.1 (e_value=7e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00002236g0002.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.66|1|1|3|0|101 NbS00028758g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|0.5|0.33|3|723|538; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q9LVD2|C71BA_ARATH (e_value=1e-112) Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1;; (*TAIR) AT5G57260.1 (e_value=9e-114) | Symbols: CYP71B10 | cytochrome P450, family 71, subfamily B, polypeptide 10 | chr5:23198694-23200273 REVERSE LENGTH=502;; (*ITAG) Solyc04g011680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00028758g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|57013964|ref|YP_173436.1| (e_value=6e-50) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00028758g0010.1 protein AED:0.47 eAED:0.86 QI:0|0|0.33|0.66|1|1|3|27|93 NbS00006493g0017.1 protein AED:0.14 eAED:0.14 QI:0|1|0.87|1|0.57|0.75|8|609|303; (*GB) gi|224129238|ref|XP_002320535.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48240.1 (e_value=6e-79) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr5:19559301-19561153 FORWARD LENGTH=309;; (*ITAG) Solyc05g005730.2.1 (e_value=4e-105) genomic_reference:SL2.40ch05 gene_region:537018-540764 transcript_region:SL2.40ch05:537018..540764+ functional_description:"RRP15-like protein (AHRD V1 *-*- C1C024_9MAXI); contains Interpro domain(s) IPR012459 Protein of unknown function DUF1665 "; NbS00006493g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|225448645|ref|XP_002274437.1| (e_value=1e-27) PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera];; (*SWP) sp|Q501D5|MCMBP_ARATH (e_value=7e-14) Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1;; (*TAIR) AT2G40550.1 (e_value=5e-15) | Symbols: ETG1 | E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589;; (*ITAG) Solyc06g050180.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:29155308-29156960 transcript_region:SL2.40ch06:29155308..29156960+ functional_description:"UPF0557 protein C10orf119 homolog (AHRD V1 *--- CJ119_MOUSE); contains Interpro domain(s) IPR019140 Protein of unknown function DUF2044, membrane "; NbS00006493g0020.1 protein AED:0.19 eAED:0.22 QI:0|0.5|0.28|0.85|0.66|0.85|7|788|438; (*GB) gi|356577552|ref|XP_003556888.1| (e_value=8e-149) PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max];; (*SWP) sp|Q9LUA9|COL10_ARATH (e_value=1e-107) Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1;; (*TAIR) AT5G48250.1 (e_value=1e-108) | Symbols: | B-box type zinc finger protein with CCT domain | chr5:19561719-19563113 REVERSE LENGTH=373;; (*ITAG) Solyc07g045180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55614263-55620975 transcript_region:SL2.40ch07:55614263..55620975+ go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005515,GO:0003700 NbS00003449g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|225469306|ref|XP_002269823.1| (e_value=6e-71) PREDICTED: ycf20-like protein isoform 2 [Vitis vinifera];; (*TAIR) AT5G43050.1 (e_value=3e-68) | Symbols: NPQ6 | Protein of unknown function (DUF565) | chr5:17268404-17268880 FORWARD LENGTH=158;; (*ITAG) Solyc02g072460.1.1 (e_value=1e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36236896-36237360 transcript_region:SL2.40ch02:36236896..36237360- functional_description:"Ycf20-like protein (AHRD V1 ***- YC20L_SYNY3); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00003449g0011.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|109; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=4e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGT6|EFR_ARATH (e_value=3e-22) LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1;; (*TAIR) AT5G20480.1 (e_value=2e-23) | Symbols: EFR | EF-TU receptor | chr5:6922497-6925679 FORWARD LENGTH=1031;; (*ITAG) Solyc02g072400.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00003449g0012.1 protein AED:0.25 eAED:0.44 QI:58|0|0|1|0|0|3|0|152; (*GB) gi|359485451|ref|XP_002276944.2| (e_value=1e-30) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-18) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=1e-19) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g072400.1.1 (e_value=4e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00057283g0002.1 protein AED:0.36 eAED:0.51 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|13537415|dbj|BAB40706.1| (e_value=1e-24) kinesin-like polypeptides 8 [Nicotiana tabacum];; (*TAIR) AT3G19050.1 (e_value=4e-21) | Symbols: POK2 | phragmoplast orienting kinesin 2 | chr3:6578047-6590106 FORWARD LENGTH=2771;; (*ITAG) Solyc01g108670.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:87657336-87672745 transcript_region:SL2.40ch01:87657336..87672745- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q75LL2_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00059460g0005.1 protein AED:0.39 eAED:0.41 QI:27|0.75|0.66|1|1|1|9|0|359; (*GB) gi|302142919|emb|CBI20214.3| (e_value=2e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5J6|IPT9_ARATH (e_value=5e-104) tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1;; (*TAIR) AT5G20040.2 (e_value=3e-105) | Symbols: ATIPT9, IPT9 | isopentenyltransferase 9 | chr5:6767939-6770980 REVERSE LENGTH=459;; (*ITAG) Solyc12g014190.1.1 (e_value=3e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5034317-5040335 transcript_region:SL2.40ch12:5034317..5040335- go_terms:GO:0008033 functional_description:"tRNA dimethylallyltransferase (AHRD V1 ***- D6YRN6_WADCW); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0008033 NbS00043675g0005.1 protein AED:0.15 eAED:0.16 QI:255|0.91|0.84|1|0.66|0.61|13|341|812; (*GB) gi|350537897|ref|NP_001234316.1| (e_value=0.0) auxin response factor 3 [Solanum lycopersicum];; (*SWP) sp|O23661|ARFC_ARATH (e_value=0.0) Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2;; (*TAIR) AT2G33860.1 (e_value=0.0) | Symbols: ETT, ARF3 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr2:14325444-14328613 REVERSE LENGTH=608;; (*ITAG) Solyc02g077560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37038134-37044666 transcript_region:SL2.40ch02:37038134..37044666+ go_terms:GO:0003700 functional_description:"Auxin response factor 3 (AHRD V1 **** Q2LAJ4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00009889g0007.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|1|2|0|219; (*GB) gi|225444283|ref|XP_002262807.1| (e_value=1e-84) PREDICTED: uncharacterized protein LOC100265893 [Vitis vinifera];; (*TAIR) AT5G42570.1 (e_value=3e-75) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc12g005910.1.1 (e_value=2e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:541920-546745 transcript_region:SL2.40ch12:541920..546745+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00009889g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.66|1|0.37|0.22|9|290|352; (*GB) gi|356499495|ref|XP_003518575.1| (e_value=0.0) PREDICTED: TBC1 domain family member 2A-like [Glycine max];; (*SWP) sp|Q9BYX2|TBD2A_HUMAN (e_value=2e-46) TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3;; (*TAIR) AT3G07890.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:2516639-2518784 REVERSE LENGTH=400;; (*ITAG) Solyc12g005930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:554207-559357 transcript_region:SL2.40ch12:554207..559357- go_terms:GO:0005622 functional_description:"TBC1 domain family member 2 (AHRD V1 ***- Q5TBQ7_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00044494g0004.1 protein AED:0.28 eAED:0.28 QI:230|0.66|1|1|0.66|0.5|4|245|127; (*GB) gi|225454282|ref|XP_002276343.1| (e_value=8e-48) PREDICTED: ubiquitin-conjugating enzyme E2 5 [Vitis vinifera];; (*SWP) sp|P42749|UBC5_ARATH (e_value=2e-37) Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2;; (*TAIR) AT1G63800.1 (e_value=1e-38) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc10g012240.2.1 (e_value=4e-50) genomic_reference:SL2.40ch10 gene_region:4720211-4724156 transcript_region:SL2.40ch10:4720211..4724156+ go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0016567,GO:0043687 NbS00019773g0102.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|680 NbS00046510g0003.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0.33|0.66|1|1|3|0|119; (*GB) gi|357504351|ref|XP_003622464.1| (e_value=6e-45) Polygalacturonase-like protein [Medicago truncatula];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=3e-44) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=4e-42) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=7e-53) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00046510g0007.1 protein AED:0.24 eAED:0.25 QI:223|0.83|0.92|1|0.75|0.76|13|595|382; (*GB) gi|225454328|ref|XP_002277525.1| (e_value=0.0) PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera];; (*SWP) sp|Q8RX88|FACE1_ARATH (e_value=0.0) CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1;; (*TAIR) AT4G01320.1 (e_value=0.0) | Symbols: ATSTE24, STE24 | Peptidase family M48 family protein | chr4:545905-549002 FORWARD LENGTH=424;; (*ITAG) Solyc01g094930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78090601-78100660 transcript_region:SL2.40ch01:78090601..78100660+ go_terms:GO:0016020 functional_description:"CAAX prenyl protease 1 (AHRD V1 ***- B4FBL0_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00001743g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|236; (*GB) gi|224089052|ref|XP_002308615.1| (e_value=9e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|A7SDW5|EIF3L_NEMVE (e_value=6e-54) Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1;; (*TAIR) AT5G25757.1 (e_value=2e-113) | Symbols: | RNA polymerase I-associated factor PAF67 | chr5:8965515-8967460 REVERSE LENGTH=514;; (*ITAG) Solyc08g068340.2.1 (e_value=6e-136) genomic_reference:SL2.40ch08 gene_region:54646333-54651826 transcript_region:SL2.40ch08:54646333..54651826- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 6-interacting protein (AHRD V1 ***- B6SYA1_MAIZE); contains Interpro domain(s) IPR019382 RNA polymerase I-associated factor PAF67 "; GO:0005515 NbS00001743g0010.1 protein AED:0.34 eAED:0.36 QI:101|0.44|0.3|0.9|0.44|0.5|10|0|524; (*GB) gi|359473318|ref|XP_002267713.2| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100258808 [Vitis vinifera];; (*TAIR) AT1G24160.2 (e_value=8e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). | chr1:8553669-8555830 REVERSE LENGTH=540;; (*ITAG) Solyc05g006490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1112454-1117445 transcript_region:SL2.40ch05:1112454..1117445- functional_description:"F3I6.9 protein (AHRD V1 *-*- O48683_ARATH)"; NbS00038614g0005.1 protein AED:0.03 eAED:0.03 QI:271|1|1|1|1|1|3|84|422; (*GB) gi|225450423|ref|XP_002276091.1| (e_value=2e-155) PREDICTED: uncharacterized protein LOC100240910 [Vitis vinifera];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=9e-82) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G09540.1 (e_value=4e-103) | Symbols: MYB61, ATMYB61 | myb domain protein 61 | chr1:3086333-3087689 FORWARD LENGTH=366;; (*ITAG) Solyc10g044680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22879521-22880870 transcript_region:SL2.40ch10:22879521..22880870+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-like transcription factor (AHRD V1 **-- B8XPP3_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00011741g0010.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|467; (*GB) gi|359477013|ref|XP_002262704.2| (e_value=3e-119) PREDICTED: U-box domain-containing protein 26-like [Vitis vinifera];; (*SWP) sp|Q9FXA4|PUB26_ARATH (e_value=1e-33) U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1;; (*TAIR) AT1G49780.1 (e_value=7e-35) | Symbols: PUB26 | plant U-box 26 | chr1:18429024-18430289 REVERSE LENGTH=421;; (*ITAG) Solyc05g056500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64916177-64917382 transcript_region:SL2.40ch05:64916177..64917382+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KF20_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00012166g0003.1 protein AED:0.29 eAED:0.29 QI:236|0.66|0.75|1|0.66|0.5|4|148|248; (*GB) gi|224089553|ref|XP_002308753.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47740.2 (e_value=3e-16) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=246;; (*ITAG) Solyc04g015120.2.1 (e_value=3e-51) genomic_reference:SL2.40ch04 gene_region:5290310-5292227 transcript_region:SL2.40ch04:5290310..5292227+ functional_description:"U-box domain containing protein expressed (AHRD V1 *--- Q10T52_ORYSJ)"; NbS00021739g0001.1 protein AED:0.24 eAED:0.34 QI:0|0|0|1|1|1|2|0|164; (*ITAG) Solyc06g065340.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37149542-37150216 transcript_region:SL2.40ch06:37149542..37150216- functional_description:"Unknown Protein (AHRD V1)"; NbS00035422g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|343; (*GB) gi|297814634|ref|XP_002875200.1| (e_value=1e-58) hypothetical protein ARALYDRAFT_484241 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G11810.1 (e_value=2e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3727819-3728865 FORWARD LENGTH=348;; (*ITAG) Solyc04g005530.2.1 (e_value=2e-136) genomic_reference:SL2.40ch04 gene_region:352495-353967 transcript_region:SL2.40ch04:352495..353967- functional_description:"Unknown Protein (AHRD V1)"; NbS00034451g0012.1 protein AED:0.19 eAED:0.25 QI:0|0.41|0.38|0.92|0.5|0.76|13|0|478; (*GB) gi|225457614|ref|XP_002273026.1| (e_value=1e-177) PREDICTED: MLO-like protein 5-like [Vitis vinifera];; (*SWP) sp|O22815|MLO5_ARATH (e_value=8e-155) MLO-like protein 5 OS=Arabidopsis thaliana GN=MLO5 PE=2 SV=1;; (*TAIR) AT2G33670.1 (e_value=6e-156) | Symbols: MLO5, ATMLO5 | Seven transmembrane MLO family protein | chr2:14245138-14247879 FORWARD LENGTH=501;; (*ITAG) Solyc08g067760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53957062-53962884 transcript_region:SL2.40ch08:53957062..53962884- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00034451g0009.1 protein AED:0.18 eAED:0.21 QI:0|0.62|0.77|1|1|1|9|182|333; (*GB) gi|255581478|ref|XP_002531546.1| (e_value=6e-103) Nucleolar essential protein, putative [Ricinus communis];; (*SWP) sp|O35130|NEP1_MOUSE (e_value=3e-56) Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1;; (*TAIR) AT3G57000.1 (e_value=5e-97) | Symbols: | nucleolar essential protein-related | chr3:21092610-21094109 FORWARD LENGTH=298;; (*ITAG) Solyc12g017630.1.1 (e_value=9e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7087202-7090616 transcript_region:SL2.40ch12:7087202..7090616+ functional_description:"Nucleolar essential protein 1 (AHRD V1 **-- B0WB67_CULQU); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 "; NbS00027079g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|1|2|0|295; (*GB) gi|225455856|ref|XP_002274167.1| (e_value=3e-114) PREDICTED: uncharacterized protein LOC100245771 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=3e-14) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G49010.1 (e_value=1e-75) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:18132714-18133778 FORWARD LENGTH=314;; (*ITAG) Solyc03g119740.2.1 (e_value=3e-157) genomic_reference:SL2.40ch03 gene_region:62346231-62347604 transcript_region:SL2.40ch03:62346231..62347604- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00027079g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|0|0|2|264|75 NbS00027079g0010.1 protein AED:0.35 eAED:0.38 QI:44|0.2|0|0.83|0.4|0.33|6|0|672; (*GB) gi|359491421|ref|XP_002275350.2| (e_value=0.0) PREDICTED: protein FAM116A-like [Vitis vinifera];; (*SWP) sp|Q8IWF6|F116A_HUMAN (e_value=5e-71) Protein FAM116A OS=Homo sapiens GN=FAM116A PE=2 SV=1;; (*TAIR) AT1G73930.2 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:27795347-27797534 REVERSE LENGTH=623;; (*ITAG) Solyc03g119750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62351226-62356072 transcript_region:SL2.40ch03:62351226..62356072- go_terms:GO:0005515 functional_description:"Family with sequence similarity 116 member B (Fragment) (AHRD V1 *--- A6X8I4_HUMAN); contains Interpro domain(s) IPR012860 Protein of unknown function DUF1630 "; GO:0005515 NbS00004309g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|86|266; (*GB) gi|224067976|ref|XP_002302627.1| (e_value=3e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=6e-42) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT2G46495.1 (e_value=5e-43) | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372;; (*ITAG) Solyc01g095860.2.1 (e_value=7e-42) genomic_reference:SL2.40ch01 gene_region:78763812-78765778 transcript_region:SL2.40ch01:78763812..78765778- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00004309g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.5|0.66|3|0|224; (*GB) gi|297745451|emb|CBI40531.3| (e_value=1e-36) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g095920.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:78825307-78827149 transcript_region:SL2.40ch01:78825307..78827149- go_terms:GO:0008171 functional_description:"O-methyltransferase family 3 (AHRD V1 ***- B5ZT51_RHILW); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; GO:0008171 NbS00004309g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|0.5|0.33|3|0|285; (*GB) gi|359489552|ref|XP_002278384.2| (e_value=3e-88) PREDICTED: uncharacterized protein LOC100258436 [Vitis vinifera];; (*TAIR) AT3G61750.1 (e_value=1e-79) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:22857897-22859254 REVERSE LENGTH=398;; (*ITAG) Solyc10g009480.2.1 (e_value=1e-158) genomic_reference:SL2.40ch10 gene_region:3583862-3585967 transcript_region:SL2.40ch10:3583862..3585967+ functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6TH76_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00039731g0007.1 protein AED:0.02 eAED:0.02 QI:163|1|1|1|0|0|4|48|416; (*GB) gi|255541354|ref|XP_002511741.1| (e_value=1e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45480.1 (e_value=5e-34) | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 | chr2:18745583-18747403 FORWARD LENGTH=429;; (*ITAG) Solyc01g091540.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:76917403-76920198 transcript_region:SL2.40ch01:76917403..76920198+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 12 (AHRD V1 *--- Q6AWX7_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00041572g0005.1 protein AED:0.25 eAED:0.27 QI:11|0.77|0.78|1|0.83|0.89|19|904|781; (*GB) gi|298204931|emb|CBI34238.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TAF3|WDR48_HUMAN (e_value=1e-116) WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1;; (*TAIR) AT3G05090.2 (e_value=0.0) | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753;; (*ITAG) Solyc01g098090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80448180-80461748 transcript_region:SL2.40ch01:80448180..80461748+ go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 ***- B6JWM7_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00041572g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225431557|ref|XP_002282176.1| (e_value=5e-54) PREDICTED: UPF0235 protein C15orf40 homolog [Vitis vinifera];; (*SWP) sp|Q9CRC3|CO040_MOUSE (e_value=3e-17) UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT1G49170.1 (e_value=5e-52) | Symbols: | Protein of unknown function (DUF167) | chr1:18183561-18184434 REVERSE LENGTH=126;; (*ITAG) Solyc03g078350.2.1 (e_value=5e-65) genomic_reference:SL2.40ch03 gene_region:44223261-44226714 transcript_region:SL2.40ch03:44223261..44226714- functional_description:"UPF0235 protein C15orf40 homolog (AHRD V1 **-- CO040_RAT); contains Interpro domain(s) IPR003746 Protein of unknown function DUF167 "; NbS00025246g0002.1 protein AED:0.04 eAED:0.05 QI:170|1|0.5|1|0|0.5|2|0|447; (*GB) gi|147767800|emb|CAN60219.1| (e_value=1e-95) hypothetical protein VITISV_011848 [Vitis vinifera];; (*TAIR) AT5G57830.1 (e_value=1e-51) | Symbols: | Protein of unknown function, DUF593 | chr5:23429406-23430860 REVERSE LENGTH=387;; (*ITAG) Solyc07g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:748702-750452 transcript_region:SL2.40ch07:748702..750452+ functional_description:"IFA-binding protein (AHRD V1 *-*- Q9CAC4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00025246g0001.1 protein AED:0.22 eAED:0.24 QI:32|0.6|0.5|0.83|0.6|0.66|6|0|161; (*GB) gi|224143915|ref|XP_002325121.1| (e_value=5e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|P42322|CANB1_NAEGR (e_value=3e-33) Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1;; (*TAIR) AT3G18430.2 (e_value=9e-80) | Symbols: | Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175;; (*ITAG) Solyc07g005900.2.1 (e_value=4e-102) genomic_reference:SL2.40ch07 gene_region:738901-744462 transcript_region:SL2.40ch07:738901..744462+ go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 ***- B6T814_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00025246g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|68 NbS00020078g0005.1 protein AED:0.12 eAED:0.12 QI:319|0.8|0.83|1|1|1|6|162|454; (*GB) gi|350536217|ref|NP_001233979.1| (e_value=0.0) amino acid transporter [Solanum lycopersicum];; (*SWP) sp|Q39134|AAP3_ARATH (e_value=0.0) Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2;; (*TAIR) AT1G77380.1 (e_value=0.0) | Symbols: AAP3, ATAAP3 | amino acid permease 3 | chr1:29075201-29077252 REVERSE LENGTH=476;; (*ITAG) Solyc11g005070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:61813-63629 transcript_region:SL2.40ch11:61813..63629- functional_description:"Amino acid permease (AHRD V1 ***- B9GU10_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00005302g0012.1 protein AED:0.12 eAED:0.12 QI:58|0.5|0.33|0.66|1|1|3|0|197; (*GB) gi|225445555|ref|XP_002282262.1| (e_value=8e-33) PREDICTED: uncharacterized protein LOC100268054 [Vitis vinifera];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=7e-21) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT2G25060.1 (e_value=8e-21) | Symbols: ENODL14, AtENODL14 | early nodulin-like protein 14 | chr2:10662308-10662930 FORWARD LENGTH=182;; (*ITAG) Solyc07g008130.2.1 (e_value=6e-71) genomic_reference:SL2.40ch07 gene_region:2838443-2840766 transcript_region:SL2.40ch07:2838443..2840766- go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00005302g0011.1 protein AED:0.13 eAED:0.13 QI:105|1|0.66|1|1|1|3|173|345; (*GB) gi|350535054|ref|NP_001234429.1| (e_value=8e-128) dicyanin precursor [Solanum lycopersicum];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=2e-29) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT5G20230.1 (e_value=5e-27) | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding protein | chr5:6826626-6827408 FORWARD LENGTH=196;; (*ITAG) Solyc07g008120.2.1 (e_value=1e-66) genomic_reference:SL2.40ch07 gene_region:2836185-2837343 transcript_region:SL2.40ch07:2836185..2837343+ go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00005302g0014.1 protein AED:0.43 eAED:0.52 QI:0|0.5|0|1|0.5|0.66|3|0|113; (*GB) gi|388504792|gb|AFK40462.1| (e_value=3e-22) unknown [Medicago truncatula];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=5e-16) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT3G17675.1 (e_value=2e-15) | Symbols: | Cupredoxin superfamily protein | chr3:6042244-6042781 REVERSE LENGTH=106;; (*ITAG) Solyc07g008140.2.1 (e_value=2e-41) genomic_reference:SL2.40ch07 gene_region:2848064-2849548 transcript_region:SL2.40ch07:2848064..2849548- go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00035285g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|126; (*ITAG) Solyc06g061110.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35510748-35511626 transcript_region:SL2.40ch06:35510748..35511626+ go_terms:GO:0009790 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00053243g0004.1 protein AED:0.13 eAED:0.13 QI:206|1|0.5|1|1|1|2|0|120; (*GB) gi|356522176|ref|XP_003529723.1| (e_value=7e-28) PREDICTED: uncharacterized protein LOC100783024 [Glycine max];; (*SWP) sp|C4B8C4|EPFL3_ARATH (e_value=2e-18) EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=3 SV=1;; (*TAIR) AT3G13898.1 (e_value=1e-19) | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). | chr3:4584011-4584334 FORWARD LENGTH=107;; (*ITAG) Solyc03g121790.2.1 (e_value=8e-58) genomic_reference:SL2.40ch03 gene_region:63898644-63899251 transcript_region:SL2.40ch03:63898644..63899251+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 3 (AHRD V1 ***- EPFL3_ARATH)"; NbS00007052g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|2|0|105; (*GB) gi|297733961|emb|CBI15208.3| (e_value=2e-23) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64654|TRL11_ARATH (e_value=1e-19) Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1;; (*TAIR) AT1G08570.2 (e_value=5e-21) | Symbols: ACHT4 | atypical CYS HIS rich thioredoxin 4 | chr1:2713059-2714312 FORWARD LENGTH=244;; (*ITAG) Solyc03g115870.2.1 (e_value=7e-28) genomic_reference:SL2.40ch03 gene_region:59525085-59526646 transcript_region:SL2.40ch03:59525085..59526646+ go_terms:GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00010323g0010.1 protein AED:0.16 eAED:0.16 QI:709|0.5|0.2|1|0.75|0.6|5|0|200; (*GB) gi|298205243|emb|CBI17302.3| (e_value=2e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54EW1|GLYC2_DICDI (e_value=8e-55) Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1;; (*TAIR) AT4G13930.1 (e_value=8e-98) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471;; (*ITAG) Solyc12g098490.1.1 (e_value=4e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64323994-64326887 transcript_region:SL2.40ch12:64323994..64326887- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** D2D306_GOSHI); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00010323g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|453; (*GB) gi|225433491|ref|XP_002265088.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera];; (*SWP) sp|Q9LIS3|GAE6_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1;; (*TAIR) AT3G23820.1 (e_value=0.0) | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460;; (*ITAG) Solyc09g092330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66806933-66808291 transcript_region:SL2.40ch09:66806933..66808291- go_terms:GO:0042803 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0042803 NbS00041085g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.25|1|1|1|4|0|439; (*GB) gi|1531672|gb|AAC49651.1| (e_value=0.0) actin [Striga asiatica];; (*SWP) sp|O81221|ACT_GOSHI (e_value=0.0) Actin OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc10g080500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61081201-61082937 transcript_region:SL2.40ch10:61081201..61082937+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00012185g0002.1 protein AED:0.48 eAED:0.78 QI:0|0|0|1|0|0.5|2|0|73 NbS00012185g0003.1 protein AED:0.58 eAED:0.88 QI:0|0|0|0.85|0|0.14|7|0|156 NbS00012185g0004.1 protein AED:0.87 eAED:0.89 QI:0|0|0|0.66|0.5|0.33|3|0|92 NbS00030734g0009.1 protein AED:0.12 eAED:0.18 QI:0|0.44|0.4|0.9|0.55|0.6|10|0|690; (*GB) gi|359488399|ref|XP_002279543.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253124 [Vitis vinifera];; (*SWP) sp|Q9LFS2|GEX3_ARATH (e_value=7e-147) Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana GN=GEX3 PE=2 SV=1;; (*TAIR) AT5G16020.1 (e_value=5e-148) | Symbols: GEX3 | gamete-expressed 3 | chr5:5229692-5232241 FORWARD LENGTH=641;; (*ITAG) Solyc03g045080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15462573-15468052 transcript_region:SL2.40ch03:15462573..15468052- functional_description:"Receptor-like protein kinase 2 (AHRD V1 *--- RCH2_ARATH); contains Interpro domain(s) IPR011047 Quinonprotein alcohol dehydrogenase-like "; NbS00030734g0008.1 protein AED:0.37 eAED:0.44 QI:0|0.88|0.8|1|0.44|0.7|10|0|402; (*GB) gi|225451945|ref|XP_002283034.1| (e_value=1e-160) PREDICTED: uncharacterized protein LOC100256561 [Vitis vinifera];; (*TAIR) AT3G02420.1 (e_value=2e-159) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:496179-498772 REVERSE LENGTH=348;; (*ITAG) Solyc03g045090.2.1 (e_value=5e-169) genomic_reference:SL2.40ch03 gene_region:15474052-15478785 transcript_region:SL2.40ch03:15474052..15478785- functional_description:"cDNA clone 001-043-A08 full insert sequence (AHRD V1 **-- B7E741_ORYSJ)"; NbS00054264g0007.1 protein AED:0.52 eAED:0.52 QI:23|0.16|0.28|0.28|0.66|0.57|7|10|147; (*ITAG) Solyc01g006700.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:1277385-1285298 transcript_region:SL2.40ch01:1277385..1285298- functional_description:"Downstream neighbor of SON (AHRD V1 *-*- Q5U2V7_RAT)"; NbS00015239g0004.1 protein AED:0.15 eAED:0.15 QI:512|1|1|1|0.71|0.75|8|186|487; (*GB) gi|350539539|ref|NP_001234688.1| (e_value=0.0) LAX4 protein [Solanum lycopersicum];; (*SWP) sp|Q9FEL7|LAX2_MEDTR (e_value=0.0) Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G38120.1 (e_value=0.0) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485;; (*ITAG) Solyc10g076790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59070137-59074683 transcript_region:SL2.40ch10:59070137..59074683- go_terms:GO:0010328,GO:0010011 functional_description:"Auxin transporter-like protein 1 (AHRD V1 **** B6U1Y3_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0010328,GO:0010011 NbS00027882g0012.1 protein AED:0.10 eAED:0.10 QI:270|0.83|1|1|0.83|0.85|7|145|456; (*GB) gi|225445848|ref|XP_002278056.1| (e_value=0.0) PREDICTED: signal recognition particle receptor subunit alpha [Vitis vinifera];; (*SWP) sp|Q9U5L1|SRPR_DROME (e_value=4e-102) Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2;; (*TAIR) AT4G30600.1 (e_value=0.0) | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634;; (*ITAG) Solyc12g009990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3132677-3136254 transcript_region:SL2.40ch12:3132677..3136254+ go_terms:GO:0017111,GO:0006614,GO:0005785 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1GCL3_PARBD); contains Interpro domain(s) IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal "; GO:0017111,GO:0006614,GO:0005785 NbS00027882g0010.1 protein AED:0.18 eAED:0.18 QI:240|1|1|1|0.71|0.62|8|172|693; (*GB) gi|255577001|ref|XP_002529385.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1;; (*TAIR) AT5G57940.3 (e_value=0.0) | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated channel 5 | chr5:23457116-23460439 FORWARD LENGTH=710;; (*ITAG) Solyc12g010010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3144264-3150904 transcript_region:SL2.40ch12:3144264..3150904+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00027882g0011.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.88|1|10|348|579; (*GB) gi|27463709|gb|AAO15916.1| (e_value=0.0) neutral leucine aminopeptidase preprotein [Solanum lycopersicum];; (*SWP) sp|Q42876|AMPL2_SOLLC (e_value=0.0) Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1;; (*TAIR) AT4G30920.1 (e_value=0.0) | Symbols: | Cytosol aminopeptidase family protein | chr4:15046589-15049304 REVERSE LENGTH=583;; (*ITAG) Solyc12g010040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3180908-3187436 transcript_region:SL2.40ch12:3180908..3187436- go_terms:GO:0003779 functional_description:"Leucyl aminopeptidase (AHRD V1 ***- D7DWG6_NOSA0); contains Interpro domain(s) IPR011356 Peptidase M17, leucyl aminopeptidase IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal "; GO:0003779 NbS00021538g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|3|426|222; (*GB) gi|255571022|ref|XP_002526462.1| (e_value=1e-83) lactoylglutathione lyase, putative [Ricinus communis];; (*TAIR) AT1G80160.1 (e_value=1e-59) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc01g103590.2.1 (e_value=5e-132) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00000949g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0.5|0.33|3|0|142; (*GB) gi|225423931|ref|XP_002278994.1| (e_value=2e-18) PREDICTED: aluminum-activated malate transporter 9 [Vitis vinifera];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=4e-14) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=3e-15) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc06g072910.2.1 (e_value=5e-53) genomic_reference:SL2.40ch06 gene_region:41337629-41338695 transcript_region:SL2.40ch06:41337629..41338695+ functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00056960g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|285; (*GB) gi|224139146|ref|XP_002326779.1| (e_value=2e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31460.1 (e_value=1e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink). | chr1:11261705-11262610 REVERSE LENGTH=301;; (*ITAG) Solyc07g055880.1.1 (e_value=4e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61118930-61119145 transcript_region:SL2.40ch07:61118930..61119145- functional_description:"Unknown Protein (AHRD V1)"; NbS00027891g0001.1 protein AED:0.39 eAED:0.54 QI:0|0|0|1|1|1|2|0|86; (*ITAG) Solyc08g068130.1.1 (e_value=2e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54425119-54425589 transcript_region:SL2.40ch08:54425119..54425589- functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 **-- Q94IC5_9ROSI); contains Interpro domain(s) IPR004873 BURP "; NbS00004932g0014.1 protein AED:0.05 eAED:0.05 QI:157|0.83|0.71|1|0.66|0.71|7|372|857; (*GB) gi|297738650|emb|CBI27895.3| (e_value=4e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LTS7|C3H65_ARATH (e_value=3e-39) Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1;; (*TAIR) AT5G56930.1 (e_value=2e-40) | Symbols: emb1789 | CCCH-type zinc finger family protein | chr5:23027949-23030565 REVERSE LENGTH=675;; (*ITAG) Solyc05g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3490284-3496454 transcript_region:SL2.40ch05:3490284..3496454+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 65 (AHRD V1 *-*- C3H65_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00004932g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.77|1|0.75|0.77|9|479|1006; (*GB) gi|359481264|ref|XP_002264741.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249976 [Vitis vinifera];; (*SWP) sp|Q8CIM8|INT4_MOUSE (e_value=3e-20) Integrator complex subunit 4 OS=Mus musculus GN=Ints4 PE=2 SV=1;; (*TAIR) AT3G08800.1 (e_value=3e-178) | Symbols: | ARM repeat superfamily protein | chr3:2671148-2674910 FORWARD LENGTH=936;; (*ITAG) Solyc01g090260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75686824-75689285 transcript_region:SL2.40ch01:75686824..75689285+ functional_description:"HEAT repeat family protein expressed (AHRD V1 ***- Q10N57_ORYSJ)"; NbS00004932g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|0.88|1|1|9|0|248; (*GB) gi|45433315|emb|CAD27461.1| (e_value=4e-101) nucleosome assembly protein 1-like protein 2 [Nicotiana tabacum];; (*TAIR) AT2G19480.3 (e_value=2e-70) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc12g008940.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00006811g0002.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.8|0.8|0.25|0.2|5|452|59 NbS00006811g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.88|1|1|1|9|378|474; (*GB) gi|350538067|ref|NP_001234325.1| (e_value=0.0) SNF1-related protein kinase [Solanum lycopersicum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.3 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512;; (*ITAG) Solyc03g115700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59393788-59397846 transcript_region:SL2.40ch03:59393788..59397846+ go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase alpha-2 catalytic subunit (AHRD V1 **** Q2LAI0_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00006811g0102.1 protein AED:0.66 eAED:0.73 QI:0|0|0|1|1|1|2|0|99 NbS00006811g0106.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0|0|3|0|153 NbS00006811g0105.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|116 NbS00006811g0211.1 protein AED:0.22 eAED:0.23 QI:0|0.6|0.36|1|0.7|0.54|11|0|778 NbS00006811g0207.1 protein AED:0.39 eAED:0.39 QI:0|0|0.33|0.33|1|1|3|73|66 NbS00006811g0212.1 protein AED:0.43 eAED:0.43 QI:0|0|0.5|0.5|1|1|2|46|62 NbS00014979g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|119 NbS00014979g0018.1 protein AED:0.36 eAED:0.37 QI:278|1|0.85|1|1|1|7|0|505; (*GB) gi|255567650|ref|XP_002524804.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02940.1 (e_value=8e-166) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569;; (*ITAG) Solyc09g074050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61246545-61253456 transcript_region:SL2.40ch09:61246545..61253456+ functional_description:"Oxidoreductase (AHRD V1 ***- D7M3B5_ARALY)"; NbS00014979g0001.1 protein AED:0.46 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|225436894|ref|XP_002271361.1| (e_value=7e-51) PREDICTED: uncharacterized protein LOC100256341 [Vitis vinifera];; (*TAIR) AT4G02940.1 (e_value=9e-20) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569;; (*ITAG) Solyc09g074050.2.1 (e_value=4e-93) genomic_reference:SL2.40ch09 gene_region:61246545-61253456 transcript_region:SL2.40ch09:61246545..61253456+ functional_description:"Oxidoreductase (AHRD V1 ***- D7M3B5_ARALY)"; NbS00014979g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|510; (*GB) gi|225436892|ref|XP_002273759.1| (e_value=4e-71) PREDICTED: uncharacterized protein LOC100252855 [Vitis vinifera];; (*SWP) sp|A2BIJ3|BSDC1_DANRE (e_value=8e-19) BSD domain-containing protein 1 OS=Danio rerio GN=bsdc1 PE=1 SV=1;; (*TAIR) AT1G03350.1 (e_value=1e-61) | Symbols: | BSD domain-containing protein | chr1:822834-824246 REVERSE LENGTH=470;; (*ITAG) Solyc09g074060.2.1 (e_value=7e-145) genomic_reference:SL2.40ch09 gene_region:61255344-61256749 transcript_region:SL2.40ch09:61255344..61256749- functional_description:"BSD domain containing 1 (AHRD V1 *-*- A9JT15_DANRE); contains Interpro domain(s) IPR005607 BSD "; NbS00014979g0017.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|253; (*GB) gi|225436890|ref|XP_002271296.1| (e_value=2e-152) PREDICTED: probable galacturonosyltransferase-like 4 [Vitis vinifera];; (*SWP) sp|Q9M8J2|GATL4_ARATH (e_value=2e-140) Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1;; (*TAIR) AT3G06260.1 (e_value=1e-141) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351;; (*ITAG) Solyc09g074080.1.1 (e_value=6e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61260136-61261200 transcript_region:SL2.40ch09:61260136..61261200- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00047217g0002.1 protein AED:0.18 eAED:0.26 QI:248|0.5|0.33|0.66|0.5|0|3|372|38 NbS00001247g0016.1 protein AED:0.03 eAED:0.03 QI:186|1|0.5|1|0|0.5|2|0|144; (*GB) gi|225442973|ref|XP_002267834.1| (e_value=4e-19) PREDICTED: uncharacterized protein LOC100266397 [Vitis vinifera];; (*ITAG) Solyc03g116660.2.1 (e_value=1e-47) genomic_reference:SL2.40ch03 gene_region:60031325-60034050 transcript_region:SL2.40ch03:60031325..60034050+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001247g0017.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|66|230; (*GB) gi|225442975|ref|XP_002267925.1| (e_value=2e-77) PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SSQ8|HS26M_ARATH (e_value=2e-71) 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1;; (*TAIR) AT1G52560.1 (e_value=1e-72) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19574783-19575766 REVERSE LENGTH=232;; (*ITAG) Solyc12g042830.1.1 (e_value=2e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43709595-43709834 transcript_region:SL2.40ch12:43709595..43709834- functional_description:"class I heat shock protein (AHRD V1 -**- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00001247g0015.1 protein AED:0.12 eAED:0.12 QI:106|1|1|1|1|1|3|342|311; (*GB) gi|255553177|ref|XP_002517631.1| (e_value=2e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G20190.1 (e_value=4e-47) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6814093-6815171 FORWARD LENGTH=290;; (*ITAG) Solyc03g116670.2.1 (e_value=3e-98) genomic_reference:SL2.40ch03 gene_region:60036546-60038822 transcript_region:SL2.40ch03:60036546..60038822+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001247g0014.1 protein AED:0.15 eAED:0.15 QI:210|1|1|1|1|1|2|239|343; (*GB) gi|306846440|gb|ADN06078.1| (e_value=6e-25) DNA methylation protein MBD1 [Capsicum annuum];; (*SWP) sp|Q9XI36|MBD10_ARATH (e_value=5e-17) Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1;; (*TAIR) AT1G15340.1 (e_value=4e-18) | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384;; (*ITAG) Solyc03g116680.2.1 (e_value=6e-49) genomic_reference:SL2.40ch03 gene_region:60039988-60042776 transcript_region:SL2.40ch03:60039988..60042776+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00001247g0013.1 protein AED:0.24 eAED:0.24 QI:151|0.33|0.25|1|0.33|0.25|4|0|372; (*GB) gi|297743460|emb|CBI36327.3| (e_value=3e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|P29602|CPC_CUCSA (e_value=7e-28) Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3;; (*TAIR) AT5G20230.1 (e_value=9e-24) | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding protein | chr5:6826626-6827408 FORWARD LENGTH=196;; (*ITAG) Solyc03g116690.2.1 (e_value=2e-65) genomic_reference:SL2.40ch03 gene_region:60043434-60044196 transcript_region:SL2.40ch03:60043434..60044196+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- D1MWY8_CITLA); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00017469g0208.1 protein AED:0.01 eAED:0.01 QI:36|1|1|1|0|0|2|63|77 NbS00005813g0005.1 protein AED:0.01 eAED:0.01 QI:31|0.91|0.92|1|0.58|0.69|13|767|918; (*GB) gi|225448437|ref|XP_002271239.1| (e_value=0.0) PREDICTED: NF-X1-type zinc finger protein NFXL2 [Vitis vinifera];; (*SWP) sp|Q9FFK8|NFXL2_ARATH (e_value=0.0) NF-X1-type zinc finger protein NFXL2 OS=Arabidopsis thaliana GN=NFXL2 PE=2 SV=2;; (*TAIR) AT5G05660.1 (e_value=0.0) | Symbols: ATNFXL2 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors | chr5:1691113-1695464 REVERSE LENGTH=880;; (*ITAG) Solyc06g051570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31568208-31585418 transcript_region:SL2.40ch06:31568208..31585418- go_terms:GO:0005515 functional_description:"NF-X1 type zinc finger family protein (AHRD V1 **-- D7KKM7_ARALY); contains Interpro domain(s) IPR000967 Zinc finger, NF-X1-type "; GO:0005515 NbS00033013g0012.1 protein AED:0.04 eAED:0.04 QI:0|0.8|0.5|1|1|1|6|133|405; (*GB) gi|225451792|ref|XP_002281199.1| (e_value=0.0) PREDICTED: protein COBRA isoform 1 [Vitis vinifera];; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc03g114910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58828301-58831099 transcript_region:SL2.40ch03:58828301..58831099- functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00033013g0010.1 protein AED:0.05 eAED:0.06 QI:135|0.4|0.83|1|0.8|0.66|6|157|391; (*GB) gi|110559491|gb|ABG76000.1| (e_value=0.0) GRP-like protein 2 [Gossypium hirsutum];; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc03g114860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58802749-58804466 transcript_region:SL2.40ch03:58802749..58804466- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00033013g0005.1 protein AED:0.11 eAED:0.13 QI:0|1|0.5|1|0|0|2|354|253; (*GB) gi|147778329|emb|CAN69561.1| (e_value=1e-46) hypothetical protein VITISV_040028 [Vitis vinifera];; (*ITAG) Solyc12g038520.1.1 (e_value=5e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35933880-35935930 transcript_region:SL2.40ch12:35933880..35935930- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00033013g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|1|1|5|0|428; (*GB) gi|255547141|ref|XP_002514628.1| (e_value=0.0) Protein COBRA precursor, putative [Ricinus communis];; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=0.0) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=0.0) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc03g114900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58826189-58828118 transcript_region:SL2.40ch03:58826189..58828118+ functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00012555g0005.1 protein AED:0.24 eAED:0.24 QI:75|0.5|0.33|1|0.87|0.88|9|0|879; (*GB) gi|297738969|emb|CBI28214.3| (e_value=4e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G20200.1 (e_value=3e-28) | Symbols: | nucleoporin-related | chr5:6816776-6821620 FORWARD LENGTH=762;; (*ITAG) Solyc07g008190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2929643-2938079 transcript_region:SL2.40ch07:2929643..2938079- functional_description:"Unknown Protein (AHRD V1)"; NbS00008813g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0.5|2|222|343; (*GB) gi|359482337|ref|XP_002267057.2| (e_value=1e-168) PREDICTED: pentatricopeptide repeat-containing protein At1g80150, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8GW57|PP134_ARATH (e_value=3e-147) Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2;; (*TAIR) AT1G80150.1 (e_value=2e-148) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30148738-30149931 FORWARD LENGTH=397;; (*ITAG) Solyc05g012250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5539986-5545737 transcript_region:SL2.40ch05:5539986..5545737- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022766g0002.1 protein AED:0.17 eAED:0.18 QI:825|0.8|0.83|1|0.6|0.66|6|257|347; (*GB) gi|224105607|ref|XP_002313870.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04130|SERA_ARATH (e_value=2e-169) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=0.0) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc03g112070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56655923-56660333 transcript_region:SL2.40ch03:56655923..56660333- go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00032915g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|71; (*GB) gi|357480027|ref|XP_003610299.1| (e_value=9e-29) Stress-induced hydrophobic peptide [Medicago truncatula];; (*SWP) sp|Q9SUI0|RC24_ARATH (e_value=6e-29) UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana GN=At4g30660 PE=2 SV=1;; (*TAIR) AT4G28088.1 (e_value=3e-30) | Symbols: | Low temperature and salt responsive protein family | chr4:13961244-13961560 REVERSE LENGTH=77;; (*ITAG) Solyc07g005720.2.1 (e_value=2e-39) genomic_reference:SL2.40ch07 gene_region:593348-594966 transcript_region:SL2.40ch07:593348..594966+ go_terms:GO:0005515 functional_description:"Plasma membrane protein 3 (AHRD V1 **-- Q6BDB3_LEYCH); contains Interpro domain(s) IPR000612 Uncharacterised protein family UPF0057 "; GO:0005515 NbS00035731g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.61|0.57|0.85|0.46|0.64|14|259|564; (*GB) gi|359495436|ref|XP_002274710.2| (e_value=3e-169) PREDICTED: uncharacterized protein LOC100247818 [Vitis vinifera];; (*TAIR) AT5G19840.1 (e_value=2e-121) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6705372-6709382 FORWARD LENGTH=505;; (*ITAG) Solyc09g065690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59512700-59525229 transcript_region:SL2.40ch09:59512700..59525229- functional_description:"Transcription factor jumonji (JmjC) domain-containing protein-like (AHRD V1 **-- Q5ZC07_ORYSJ); contains Interpro domain(s) IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase "; NbS00024344g0007.1 protein AED:0.09 eAED:0.11 QI:35|0.53|0.42|1|0.46|0.5|14|0|851; (*GB) gi|255556095|ref|XP_002519082.1| (e_value=0.0) phosphatidylinositol 4-kinase, putative [Ricinus communis];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=0.0) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=0.0) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043130.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:34865935-34882372 transcript_region:SL2.40ch11:34865935..34882372- go_terms:GO:0048015 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 ***- D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0048015 NbS00031792g0011.1 protein AED:0.00 eAED:0.00 QI:68|1|1|1|1|1|3|281|119; (*GB) gi|255562272|ref|XP_002522144.1| (e_value=5e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G49975.1 (e_value=9e-30) | Symbols: | INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18504845-18505431 FORWARD LENGTH=129; NbS00031792g0016.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|0.5|4|0|361; (*GB) gi|359487025|ref|XP_002266714.2| (e_value=1e-156) PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera];; (*SWP) sp|Q54NS9|AIFA_DICDI (e_value=8e-40) Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1;; (*TAIR) AT3G44190.1 (e_value=1e-149) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367;; (*ITAG) Solyc05g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64078788-64081810 transcript_region:SL2.40ch05:64078788..64081810- go_terms:GO:0009055 functional_description:"Pyridine nucleotide-disulphide oxidoreductase (NADH dehydrogenase) (AHRD V1 **-- Q6HBW6_BACHK); contains Interpro domain(s) IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region "; GO:0009055 NbS00031792g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|506; (*GB) gi|255566593|ref|XP_002524281.1| (e_value=2e-140) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=8e-55) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G25470.1 (e_value=5e-60) | Symbols: AtRLP21, RLP21 | receptor like protein 21 | chr2:10838420-10841881 FORWARD LENGTH=935;; (*ITAG) Solyc05g055190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64086153-64089239 transcript_region:SL2.40ch05:64086153..64089239+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00031792g0002.1 protein AED:0.16 eAED:0.39 QI:311|0|0.5|1|1|1|2|0|169 NbS00031792g0013.1 protein AED:0.16 eAED:0.73 QI:30|0|0.5|1|0|0|2|0|57 NbS00031792g0018.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|455; (*GB) gi|255566593|ref|XP_002524281.1| (e_value=2e-90) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=5e-39) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G25470.1 (e_value=1e-51) | Symbols: AtRLP21, RLP21 | receptor like protein 21 | chr2:10838420-10841881 FORWARD LENGTH=935;; (*ITAG) Solyc05g055190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64086153-64089239 transcript_region:SL2.40ch05:64086153..64089239+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00031792g0017.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|416; (*GB) gi|255566593|ref|XP_002524281.1| (e_value=6e-100) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-21) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=2e-34) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc05g055190.1.1 (e_value=1e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64086153-64089239 transcript_region:SL2.40ch05:64086153..64089239+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00047746g0009.1 protein AED:0.20 eAED:0.20 QI:207|1|1|1|1|1|14|511|557; (*GB) gi|365222856|gb|AEW69780.1| (e_value=0.0) Hop-interacting protein THI002 [Solanum lycopersicum];; (*TAIR) AT5G41950.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16785825-16789360 FORWARD LENGTH=565;; (*ITAG) Solyc08g083070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62811761-62823112 transcript_region:SL2.40ch08:62811761..62823112- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- D5V340_ARCNC); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00047746g0010.1 protein AED:0.16 eAED:0.18 QI:14|0.4|0.16|1|0.8|0.83|6|0|600; (*GB) gi|225426607|ref|XP_002280483.1| (e_value=0.0) PREDICTED: metal-nicotianamine transporter YSL1 [Vitis vinifera];; (*SWP) sp|Q6R3L0|YSL1_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2;; (*TAIR) AT4G24120.1 (e_value=0.0) | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 | chr4:12524581-12527023 FORWARD LENGTH=673;; (*ITAG) Solyc08g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62808532-62811413 transcript_region:SL2.40ch08:62808532..62811413+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00047182g0003.1 protein AED:0.22 eAED:0.22 QI:275|1|1|1|1|1|5|164|490; (*GB) gi|147866320|emb|CAN82032.1| (e_value=0.0) hypothetical protein VITISV_012090 [Vitis vinifera];; (*SWP) sp|Q55480|YZ37_SYNY3 (e_value=1e-31) Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0537 PE=3 SV=1;; (*TAIR) AT4G27600.1 (e_value=0.0) | Symbols: NARA5 | pfkB-like carbohydrate kinase family protein | chr4:13782753-13785005 REVERSE LENGTH=471;; (*ITAG) Solyc03g097210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52970981-52975260 transcript_region:SL2.40ch03:52970981..52975260+ go_terms:GO:0016301 functional_description:"Kinase pfkB family protein (AHRD V1 **-* Q0FQL0_9RHOB); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00010025g0002.1 protein AED:0.06 eAED:0.06 QI:148|1|0.66|1|0|0|3|517|437; (*GB) gi|115454823|ref|NP_001051012.1| (e_value=0.0) Os03g0702800 [Oryza sativa Japonica Group];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc12g010520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3517600-3518817 transcript_region:SL2.40ch12:3517600..3518817+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-1 (AHRD V1 **** B6U1I9_MAIZE); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00010025g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.87|0.66|1|0.75|0.88|9|0|628; (*GB) gi|78440948|gb|ABB43279.1| (e_value=0.0) oxysterol-binding related protein 1 [Petunia integrifolia];; (*SWP) sp|Q940Y1|ORP2A_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1;; (*TAIR) AT4G22540.1 (e_value=0.0) | Symbols: ORP2A | OSBP(oxysterol binding protein)-related protein 2A | chr4:11860969-11866108 REVERSE LENGTH=721;; (*ITAG) Solyc12g010510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3512180-3515458 transcript_region:SL2.40ch12:3512180..3515458- go_terms:GO:0008202 functional_description:"Oxysterol-binding protein (AHRD V1 ***- A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008202 NbS00010025g0003.1 protein AED:0.77 eAED:0.79 QI:0|0|0|0.25|1|1|4|0|160 NbS00029995g0012.1 protein AED:0.15 eAED:0.15 QI:33|0.9|0.90|0.90|0.8|0.81|11|1271|488; (*GB) gi|225436687|ref|XP_002263127.1| (e_value=0.0) PREDICTED: fatty acyl-CoA reductase 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=1e-172) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=8e-174) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50014211-50020961 transcript_region:SL2.40ch11:50014211..50020961- go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00029995g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|69|151; (*GB) gi|147807514|emb|CAN66186.1| (e_value=1e-42) hypothetical protein VITISV_032381 [Vitis vinifera];; (*TAIR) AT1G60870.1 (e_value=3e-19) | Symbols: MEE9 | maternal effect embryo arrest 9 | chr1:22409712-22410227 FORWARD LENGTH=147;; (*ITAG) Solyc01g104190.2.1 (e_value=2e-70) genomic_reference:SL2.40ch01 gene_region:84405268-84406072 transcript_region:SL2.40ch01:84405268..84406072+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029995g0019.1 protein AED:0.10 eAED:0.10 QI:0|0.25|0|1|0.25|0.2|5|0|232; (*GB) gi|359479527|ref|XP_003632284.1| (e_value=1e-51) PREDICTED: fatty acyl-CoA reductase 3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=7e-42) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=5e-43) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc01g104200.2.1 (e_value=7e-92) genomic_reference:SL2.40ch01 gene_region:84406092-84409241 transcript_region:SL2.40ch01:84406092..84409241- go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00029995g0013.1 protein AED:0.29 eAED:0.29 QI:149|1|1|1|0.9|0.90|11|215|830; (*GB) gi|359486082|ref|XP_002273298.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248070 [Vitis vinifera];; (*TAIR) AT1G71240.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr1:26855489-26859599 FORWARD LENGTH=823;; (*ITAG) Solyc01g104300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84469599-84483989 transcript_region:SL2.40ch01:84469599..84483989- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00029995g0015.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|3|0|226; (*GB) gi|224063130|ref|XP_002301005.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|P50699|TLPH_ARATH (e_value=4e-44) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT1G77700.1 (e_value=4e-69) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:29204747-29206217 FORWARD LENGTH=356;; (*ITAG) Solyc01g104290.1.1 (e_value=1e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84467760-84469115 transcript_region:SL2.40ch01:84467760..84469115+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein 12104-13574 (AHRD V1 ***- Q9CA24_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00024042g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|215; (*ITAG) Solyc03g031950.1.1 (e_value=6e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:8708260-8708952 transcript_region:SL2.40ch03:8708260..8708952- functional_description:"Unknown Protein (AHRD V1)"; NbS00001601g0114.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|3|0|296 NbS00001601g0101.1 protein AED:0.30 eAED:0.34 QI:564|0.5|0.6|1|0.75|0.6|5|0|231 NbS00001601g0108.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|85 NbS00012743g0006.1 protein AED:0.28 eAED:0.31 QI:0|0.6|0.33|0.83|0.6|0.66|6|0|325; (*GB) gi|356507692|ref|XP_003522598.1| (e_value=1e-124) PREDICTED: lysine histidine transporter-like 5-like [Glycine max];; (*SWP) sp|Q9C9J0|LHTL5_ARATH (e_value=4e-114) Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2;; (*TAIR) AT1G71680.1 (e_value=3e-115) | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944671-26946731 FORWARD LENGTH=448;; (*ITAG) Solyc02g093860.2.1 (e_value=9e-105) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00012743g0007.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.66|1|1|3|0|105; (*GB) gi|255574265|ref|XP_002528047.1| (e_value=3e-30) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9C9J0|LHTL5_ARATH (e_value=8e-29) Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2;; (*TAIR) AT1G71680.1 (e_value=6e-30) | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944671-26946731 FORWARD LENGTH=448;; (*ITAG) Solyc05g009700.2.1 (e_value=3e-28) genomic_reference:SL2.40ch05 gene_region:3896183-3899785 transcript_region:SL2.40ch05:3896183..3899785- go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00034552g0001.1 protein AED:0.43 eAED:0.45 QI:358|0|0.25|0.75|1|1|4|0|105; (*GB) gi|255583960|ref|XP_002532727.1| (e_value=3e-59) lsm1, putative [Ricinus communis];; (*TAIR) AT3G14080.2 (e_value=1e-56) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128;; (*ITAG) Solyc06g062980.2.1 (e_value=9e-66) genomic_reference:SL2.40ch06 gene_region:36140594-36143279 transcript_region:SL2.40ch06:36140594..36143279+ go_terms:GO:0005515,GO:0000339 functional_description:"U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0000339 NbS00054826g0003.1 protein AED:0.21 eAED:0.21 QI:158|1|1|1|0.57|0.5|8|629|202; (*GB) gi|388496894|gb|AFK36513.1| (e_value=3e-84) unknown [Medicago truncatula];; (*SWP) sp|Q8VYB1|MED31_ARATH (e_value=7e-75) Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1;; (*TAIR) AT5G19910.1 (e_value=5e-76) | Symbols: MED31 | SOH1 family protein | chr5:6731484-6732821 REVERSE LENGTH=196;; (*ITAG) Solyc03g094030.2.1 (e_value=1e-100) genomic_reference:SL2.40ch03 gene_region:49198686-49200370 transcript_region:SL2.40ch03:49198686..49200370- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 31 (AHRD V1 *-*- D0MR26_PHYIN); contains Interpro domain(s) IPR008831 Mediator complex, subunit Med31 "; GO:0016592 NbS00041638g0020.1 protein AED:0.24 eAED:0.24 QI:121|1|1|1|0.71|0.75|8|338|431; (*GB) gi|359492029|ref|XP_003634352.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3ECD0|PUS2_ARATH (e_value=8e-179) RNA pseudourine synthase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g76050 PE=2 SV=1;; (*TAIR) AT1G76050.2 (e_value=6e-180) | Symbols: | Pseudouridine synthase family protein | chr1:28540858-28542826 FORWARD LENGTH=430;; (*ITAG) Solyc04g081920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63370583-63373715 transcript_region:SL2.40ch04:63370583..63373715+ go_terms:GO:0005515,GO:0009982 functional_description:"Pseudouridine synthase (AHRD V1 **** Q2S3B7_SALRD); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0005515,GO:0009982 NbS00041638g0001.1 protein AED:0.27 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|243; (*GB) gi|357467067|ref|XP_003603818.1| (e_value=7e-71) Nucleoredoxin [Medicago truncatula];; (*SWP) sp|Q0JIL1|NRX2_ORYSJ (e_value=4e-46) Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1;; (*TAIR) AT1G60420.1 (e_value=6e-39) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc04g081900.2.1 (e_value=2e-100) genomic_reference:SL2.40ch04 gene_region:63357264-63360186 transcript_region:SL2.40ch04:63357264..63360186+ go_terms:GO:0045454 functional_description:"Nucleoredoxin 1 (AHRD V1 **-- A8I9L1_CHLRE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00041638g0024.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0.5|2|0|125; (*GB) gi|224083147|ref|XP_002306954.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0JIL1|NRX2_ORYSJ (e_value=2e-21) Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1;; (*TAIR) AT1G60420.1 (e_value=7e-14) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc04g081900.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:63357264-63360186 transcript_region:SL2.40ch04:63357264..63360186+ go_terms:GO:0045454 functional_description:"Nucleoredoxin 1 (AHRD V1 **-- A8I9L1_CHLRE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00041638g0026.1 protein AED:0.74 eAED:0.83 QI:0|0|0|0.1|1|1|10|0|351 NbS00041638g0028.1 protein AED:0.13 eAED:0.13 QI:133|0.8|0.66|1|0.4|0.33|6|0|265; (*GB) gi|225459748|ref|XP_002285898.1| (e_value=1e-133) PREDICTED: prolyl 4-hydroxylase subunit alpha-2 [Vitis vinifera];; (*SWP) sp|P54001|P4HA1_RAT (e_value=6e-23) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT1G20270.1 (e_value=3e-132) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:7021383-7022923 REVERSE LENGTH=287;; (*ITAG) Solyc04g081930.2.1 (e_value=4e-165) genomic_reference:SL2.40ch04 gene_region:63374898-63378319 transcript_region:SL2.40ch04:63374898..63378319- go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TYA6_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00041638g0021.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.85|1|0.83|0.71|7|291|502; (*GB) gi|255539058|ref|XP_002510594.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=0.0) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.2 (e_value=0.0) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28537743-28540448 FORWARD LENGTH=561;; (*ITAG) Solyc04g081910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63365446-63370378 transcript_region:SL2.40ch04:63365446..63370378+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00048944g0001.1 protein AED:0.27 eAED:0.27 QI:481|0.5|0.66|1|0.5|0.66|3|0|325; (*GB) gi|22651698|gb|AAM48290.1| (e_value=5e-100) homeodomain protein Hfi22 [Nicotiana tabacum];; (*SWP) sp|P46668|ATHB6_ARATH (e_value=8e-52) Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1;; (*TAIR) AT2G22430.1 (e_value=6e-53) | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526470-9527612 REVERSE LENGTH=311;; (*ITAG) Solyc05g051460.2.1 (e_value=1e-120) genomic_reference:SL2.40ch05 gene_region:60958329-60960538 transcript_region:SL2.40ch05:60958329..60960538+ go_terms:GO:0016563,GO:0043565 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q9FXN8_ZINEL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0016563,GO:0043565 NbS00017543g0006.1 protein AED:0.24 eAED:0.24 QI:7|0.78|0.8|1|0.68|0.8|20|0|892; (*GB) gi|225432808|ref|XP_002279408.1| (e_value=0.0) PREDICTED: protein argonaute 10-like [Vitis vinifera];; (*SWP) sp|Q9XGW1|AGO10_ARATH (e_value=0.0) Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1;; (*TAIR) AT5G43810.2 (e_value=0.0) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc09g082830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63888767-63895211 transcript_region:SL2.40ch09:63888767..63895211- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00010410g0008.1 protein AED:0.30 eAED:0.61 QI:0|0|0|0.85|1|1|7|0|685; (*GB) gi|225428276|ref|XP_002279589.1| (e_value=1e-178) PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Vitis vinifera];; (*SWP) sp|Q0WPZ6|PP158_ARATH (e_value=3e-155) Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1;; (*TAIR) AT2G17140.1 (e_value=2e-156) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7462820-7465740 FORWARD LENGTH=874;; (*ITAG) Solyc02g021020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:12012758-12016553 transcript_region:SL2.40ch02:12012758..12016553- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL0_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009657g0009.1 protein AED:0.29 eAED:0.29 QI:275|1|1|1|1|1|3|738|234; (*GB) gi|255561478|ref|XP_002521749.1| (e_value=2e-62) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9SN28|ATL7_ARATH (e_value=5e-48) RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1;; (*TAIR) AT4G10150.1 (e_value=4e-49) | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236;; (*ITAG) Solyc06g064440.2.1 (e_value=3e-77) genomic_reference:SL2.40ch06 gene_region:36514027-36517636 transcript_region:SL2.40ch06:36514027..36517636- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00009657g0004.1 protein AED:0.59 eAED:0.65 QI:0|0|0|0.4|1|1|5|0|217; (*GB) gi|224124412|ref|XP_002319325.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84WF5|VAMPL_ARATH (e_value=5e-16) Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1;; (*TAIR) AT4G10170.2 (e_value=4e-25) | Symbols: | SNARE-like superfamily protein | chr4:6344587-6345351 FORWARD LENGTH=254;; (*ITAG) Solyc06g064430.1.1 (e_value=1e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36510375-36511100 transcript_region:SL2.40ch06:36510375..36511100- go_terms:GO:0006810 functional_description:"Vesicle-associated membrane protein 724 (AHRD V1 *--- VA724_ARATH); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00009657g0008.1 protein AED:0.18 eAED:0.18 QI:0|1|0.83|1|1|1|6|769|332; (*GB) gi|359493535|ref|XP_002266270.2| (e_value=9e-132) PREDICTED: tRNA-specific adenosine deaminase-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q96EY9|ADAT3_HUMAN (e_value=5e-18) tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1;; (*TAIR) AT5G24670.1 (e_value=3e-110) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:8448880-8451046 FORWARD LENGTH=400;; (*ITAG) Solyc03g026100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7892790-7893986 transcript_region:SL2.40ch03:7892790..7893986- go_terms:GO:0046982,GO:0008251 functional_description:"tRNA-specific adenosine deaminase-like protein 3 (AHRD V1 *-** C1BNE2_9MAXI); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0046982,GO:0008251 NbS00028513g0016.1 protein AED:0.17 eAED:0.17 QI:124|0.87|0.66|1|0.75|0.77|9|0|853; (*GB) gi|302143309|emb|CBI21870.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JIM3|RAD26_MOUSE (e_value=1e-120) Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2;; (*TAIR) AT1G03750.1 (e_value=0.0) | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD LENGTH=862;; (*ITAG) Solyc07g053870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59600927-59609094 transcript_region:SL2.40ch07:59600927..59609094- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00028513g0014.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|199; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=8e-47) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=1e-32) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=1e-35) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc07g053880.1.1 (e_value=1e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00028513g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.4|1|0.75|0.6|5|1009|176; (*GB) gi|255553697|ref|XP_002517889.1| (e_value=2e-17) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03760.1 (e_value=5e-14) | Symbols: | Prefoldin chaperone subunit family protein | chr1:941211-943320 REVERSE LENGTH=391;; (*ITAG) Solyc07g053860.2.1 (e_value=4e-22) genomic_reference:SL2.40ch07 gene_region:59592688-59601226 transcript_region:SL2.40ch07:59592688..59601226+ go_terms:GO:0016272 functional_description:"Unconventional prefoldin RPB5 interactor (AHRD V1 *--- RMP_HUMAN); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0016272 NbS00017486g0003.1 protein AED:0.14 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|225457600|ref|XP_002272900.1| (e_value=9e-32) PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Vitis vinifera];; (*TAIR) AT5G24318.2 (e_value=8e-12) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:8282390-8283956 REVERSE LENGTH=452;; (*ITAG) Solyc12g040860.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:40853563-40855400 transcript_region:SL2.40ch12:40853563..40855400- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00017486g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|167; (*GB) gi|2346978|dbj|BAA21923.1| (e_value=8e-88) ZPT2-14 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=1e-36) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=2e-38) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc05g054650.1.1 (e_value=6e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00017486g0004.1 protein AED:0.36 eAED:0.44 QI:0|0|0|0.66|1|1|3|0|76; (*ITAG) Solyc04g039720.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30316967-30317527 transcript_region:SL2.40ch04:30316967..30317527- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00006910g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|310892570|gb|ADP37427.1| (e_value=4e-80) ethylene-responsive-element-binding factor 12 [Petunia x hybrida];; (*SWP) sp|Q40478|ERF5_TOBAC (e_value=1e-67) Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=6e-41) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc05g052040.1.1 (e_value=2e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61530247-61531344 transcript_region:SL2.40ch05:61530247..61531344- go_terms:GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** D1MWZ3_CITLA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00024453g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|225429538|ref|XP_002279306.1| (e_value=4e-57) PREDICTED: uncharacterized protein LOC100254397 [Vitis vinifera];; (*TAIR) AT5G11890.1 (e_value=2e-37) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287;; (*ITAG) Solyc08g065140.1.1 (e_value=6e-113) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:50036214-50037008 transcript_region:SL2.40ch08:50036214..50037008- functional_description:"Harpin-induced 1 (AHRD V1 ***- A2Q440_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00011098g0002.1 protein AED:0.17 eAED:0.17 QI:312|1|1|1|0.6|0.5|6|1546|255; (*GB) gi|359489230|ref|XP_002275629.2| (e_value=3e-49) PREDICTED: transcription factor UNE10-like [Vitis vinifera];; (*SWP) sp|Q8GZ38|UNE10_ARATH (e_value=8e-38) Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1;; (*TAIR) AT4G00050.1 (e_value=6e-39) | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17863-19848 FORWARD LENGTH=399;; (*ITAG) Solyc01g090790.2.1 (e_value=7e-111) genomic_reference:SL2.40ch01 gene_region:76228389-76233064 transcript_region:SL2.40ch01:76228389..76233064- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbC25900769g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|84; (*GB) gi|384038823|gb|AFH58002.1| (e_value=2e-53) chloroplast PsbP2 precursor [Nicotiana benthamiana];; (*SWP) sp|P18212|PSBP2_TOBAC (e_value=9e-53) Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2;; (*TAIR) AT1G06680.1 (e_value=1e-15) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=3e-27) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00019354g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|0.66|1|1|9|0|198; (*GB) gi|225458876|ref|XP_002285405.1| (e_value=3e-99) PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Vitis vinifera];; (*SWP) sp|Q9SY55|ECA3_ARATH (e_value=4e-94) Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3;; (*TAIR) AT1G10130.1 (e_value=3e-95) | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998;; (*ITAG) Solyc07g022770.1.1 (e_value=3e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:21539117-21551211 transcript_region:SL2.40ch07:21539117..21551211+ go_terms:GO:0016020 functional_description:"Ca-transporting ATPase (AHRD V1 ***- B0D3J7_LACBS); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00025171g0003.1 protein AED:0.00 eAED:0.00 QI:54|1|1|1|1|1|3|6|221; (*GB) gi|3893824|gb|AAD03394.1| (e_value=4e-114) ATPase beta subunit [Nicotiana sylvestris];; (*SWP) sp|P17614|ATPBM_NICPL (e_value=3e-90) ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1;; (*TAIR) AT5G08680.1 (e_value=9e-71) | Symbols: | ATP synthase alpha/beta family protein | chr5:2821992-2824683 FORWARD LENGTH=559;; (*ITAG) Solyc02g091130.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:47122405-47125579 transcript_region:SL2.40ch02:47122405..47125579+ go_terms:GO:0005507 functional_description:"ATP synthase subunit beta (AHRD V1 ***- Q9ZR78_NICSY); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0005507 NbS00060020g0007.1 protein AED:0.23 eAED:0.23 QI:175|1|1|1|0|0.5|2|0|109; (*GB) gi|639834|emb|CAA58823.1| (e_value=3e-52) NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=3e-40) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=2e-41) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=4e-54) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbC24242461g0003.1 protein AED:0.13 eAED:0.14 QI:0|1|0|1|1|1|2|0|72; (*GB) gi|357450573|ref|XP_003595563.1| (e_value=5e-30) Polygalacturonase [Medicago truncatula];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=4e-26) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43880.1 (e_value=3e-32) | Symbols: | Pectin lyase-like superfamily protein | chr2:18173034-18174482 FORWARD LENGTH=394;; (*ITAG) Solyc12g019130.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9244294-9245985 transcript_region:SL2.40ch12:9244294..9245985- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00006541g0003.1 protein AED:0.18 eAED:0.18 QI:441|1|0.9|1|1|1|10|0|531; (*GB) gi|13752560|gb|AAK38726.1|AF369706_1 (e_value=0.0) importin alpha 1 [Capsicum annuum];; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT1G09270.2 (e_value=0.0) | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2994506-2997833 FORWARD LENGTH=538;; (*ITAG) Solyc01g100720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82438317-82447158 transcript_region:SL2.40ch01:82438317..82447158- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00007655g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|311893257|dbj|BAJ25798.1| (e_value=2e-21) putative non-specific lipid-transfer protein type 2 subfamily [Nicotiana tabacum];; (*SWP) sp|P82353|NLTP2_PRUAR (e_value=2e-13) Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1;; (*TAIR) AT3G18280.1 (e_value=1e-19) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:6267102-6267392 FORWARD LENGTH=96;; (*ITAG) Solyc03g034330.1.1 (e_value=2e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:10401534-10401827 transcript_region:SL2.40ch03:10401534..10401827- go_terms:GO:0006869 functional_description:"Lipid transfer protein (AHRD V1 ***- A5JUZ7_SESIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00019366g0017.1 protein AED:0.20 eAED:0.24 QI:353|0.6|0.83|1|0.4|0.83|6|249|217; (*GB) gi|225436815|ref|XP_002270246.1| (e_value=8e-19) PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera];; (*SWP) sp|F6HQ26|RU1C_VITVI (e_value=2e-20) U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1;; (*TAIR) AT4G03120.1 (e_value=5e-19) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:1385747-1387331 FORWARD LENGTH=207;; (*ITAG) Solyc01g067830.2.1 (e_value=9e-36) genomic_reference:SL2.40ch01 gene_region:69193053-69197389 transcript_region:SL2.40ch01:69193053..69197389- go_terms:GO:0005634,GO:0008270 functional_description:"U1 small nuclear ribonucleoprotein C protein (AHRD V1 *-*- C1MKH9_MICPS); contains Interpro domain(s) IPR013085 Zinc finger, U1-C type "; GO:0005634,GO:0008270 NbS00019366g0013.1 protein AED:0.38 eAED:0.40 QI:15|0|0.5|1|0|0.5|2|160|76; (*ITAG) Solyc01g067820.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:69190398-69192447 transcript_region:SL2.40ch01:69190398..69192447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019366g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc01g067840.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:69200855-69201389 transcript_region:SL2.40ch01:69200855..69201389+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019366g0015.1 protein AED:0.17 eAED:0.20 QI:71|0.75|0.77|1|0.75|0.66|9|391|426; (*GB) gi|225432416|ref|XP_002277762.1| (e_value=7e-156) PREDICTED: uncharacterized protein LOC100259554 [Vitis vinifera];; (*TAIR) AT3G06330.1 (e_value=1e-119) | Symbols: | RING/U-box superfamily protein | chr3:1917334-1919709 FORWARD LENGTH=426;; (*ITAG) Solyc01g067800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69168624-69176357 transcript_region:SL2.40ch01:69168624..69176357- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH1 (AHRD V1 *--* MARH1_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0004842 NbS00027874g0006.1 protein AED:0.24 eAED:0.24 QI:191|0.9|0.81|1|0.6|0.72|11|0|338; (*GB) gi|359477465|ref|XP_002279174.2| (e_value=2e-178) PREDICTED: calcium-binding protein 39-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9Y376|CAB39_HUMAN (e_value=1e-75) Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1;; (*TAIR) AT5G18940.1 (e_value=1e-171) | Symbols: | Mo25 family protein | chr5:6325972-6328097 FORWARD LENGTH=345;; (*ITAG) Solyc01g080350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72075146-72082732 transcript_region:SL2.40ch01:72075146..72082732- go_terms:GO:0005515 functional_description:"Calcium binding protein 39-like (AHRD V1 **-* A0JPC1_XENTR); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00001420g0007.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.75|0.66|0.5|4|0|539; (*GB) gi|147225285|dbj|BAF62469.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9FN67|Y5133_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g41330 OS=Arabidopsis thaliana GN=At5g41330 PE=2 SV=1;; (*TAIR) AT5G41330.1 (e_value=0.0) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr5:16536452-16537828 REVERSE LENGTH=458;; (*ITAG) Solyc08g081230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61456635-61458026 transcript_region:SL2.40ch08:61456635..61458026- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7MIW8_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00013243g0014.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0.33|3|0|1011; (*GB) gi|302594419|gb|ADL59399.1| (e_value=0.0) HJTR2GH1 protein [Solanum hjertingii];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=9e-127) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-128) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g009290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2735950-2738484 transcript_region:SL2.40ch04:2735950..2738484- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013243g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|319; (*GB) gi|225465641|ref|XP_002270476.1| (e_value=8e-147) PREDICTED: pentatricopeptide repeat-containing protein At5g08305-like [Vitis vinifera];; (*SWP) sp|P0C8Q7|PP369_ARATH (e_value=4e-123) Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1;; (*TAIR) AT5G08305.1 (e_value=3e-124) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:2670134-2671738 REVERSE LENGTH=534;; (*ITAG) Solyc04g009210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2700811-2702490 transcript_region:SL2.40ch04:2700811..2702490+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00012035g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|1|1|0.75|4|0|280; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=2e-123) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=1e-113) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=9e-115) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=4e-132) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00027928g0004.1 protein AED:0.34 eAED:0.34 QI:138|0.5|0.6|1|0.25|0.4|5|336|88; (*GB) gi|255539152|ref|XP_002510641.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LDK3|NDUB2_ARATH (e_value=6e-20) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1;; (*TAIR) AT1G76200.1 (e_value=4e-21) | Symbols: | unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:28593351-28593980 FORWARD LENGTH=69; NbS00018336g0013.1 protein AED:0.09 eAED:0.09 QI:294|1|1|1|0.66|0.5|4|589|568; (*GB) gi|359474932|ref|XP_002280381.2| (e_value=2e-95) PREDICTED: F-box protein At2g16365-like [Vitis vinifera];; (*SWP) sp|Q84V03|FB348_ARATH (e_value=5e-19) F-box protein At2g16365 OS=Arabidopsis thaliana GN=At2g16365 PE=2 SV=2;; (*TAIR) AT2G16365.4 (e_value=3e-20) | Symbols: | F-box family protein | chr2:7074940-7079181 FORWARD LENGTH=727;; (*ITAG) Solyc01g109780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88393338-88396861 transcript_region:SL2.40ch01:88393338..88396861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018336g0016.1 protein AED:0.10 eAED:0.10 QI:407|1|1|1|0.69|0.57|14|394|527; (*GB) gi|224080379|ref|XP_002306118.1| (e_value=0.0) dihydrofolate reductase-thymidylate synthase [Populus trichocarpa];; (*SWP) sp|P45350|DRTS_DAUCA (e_value=0.0) Bifunctional dihydrofolate reductase-thymidylate synthase OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G16370.1 (e_value=0.0) | Symbols: THY-1 | thymidylate synthase 1 | chr2:7082038-7084333 REVERSE LENGTH=519;; (*ITAG) Solyc01g109830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88435982-88439987 transcript_region:SL2.40ch01:88435982..88439987- go_terms:GO:0009165,GO:0006231,GO:0055114 functional_description:"Thymidylate synthase (AHRD V1 ***- D8LWN8_BLAHO); contains Interpro domain(s) IPR012262 Bifunctional dihydrofolate reductase/thymidylate synthase "; GO:0009165,GO:0006231,GO:0055114 NbS00018336g0015.1 protein AED:0.15 eAED:0.15 QI:716|0.93|0.88|1|0.81|0.70|17|519|393; (*GB) gi|232166|sp|Q00081.1|GLGL1_SOLTU (e_value=0.0) RecName: Full=Glucose-1-phosphate adenylyltransferase large subunit 1; AltName: Full=ADP-glucose pyrophosphorylase; AltName: Full=ADP-glucose synthase; AltName: Full=AGPase S; AltName: Full=Alpha-D-glucose-1-phosphate adenyl transferase;; (*SWP) sp|Q00081|GLGL1_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1;; (*TAIR) AT4G39210.1 (e_value=0.0) | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase family protein | chr4:18260332-18263181 FORWARD LENGTH=521;; (*ITAG) Solyc01g109790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88397300-88401933 transcript_region:SL2.40ch01:88397300..88401933- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** Q15I66_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site "; GO:0008878 NbS00018336g0019.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.66|1|0.5|0.66|3|456|187; (*GB) gi|388507094|gb|AFK41613.1| (e_value=4e-81) unknown [Lotus japonicus];; (*SWP) sp|O48671|RER1B_ARATH (e_value=9e-79) Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2;; (*TAIR) AT2G21600.1 (e_value=7e-80) | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195;; (*ITAG) Solyc01g109770.2.1 (e_value=1e-106) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00018336g0017.1 protein AED:0.10 eAED:0.16 QI:0|0|0|1|0|0|3|0|564; (*GB) gi|359481931|ref|XP_002268663.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc10g083950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62970502-62972211 transcript_region:SL2.40ch10:62970502..62972211- functional_description:"Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00016232g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|261; (*GB) gi|225428845|ref|XP_002282369.1| (e_value=9e-65) PREDICTED: transcription factor bHLH95 [Vitis vinifera];; (*SWP) sp|Q9FXA3|BH095_ARATH (e_value=7e-15) Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2;; (*TAIR) AT1G49770.1 (e_value=5e-16) | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18424578-18426531 FORWARD LENGTH=308;; (*ITAG) Solyc01g107950.1.1 (e_value=6e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87091511-87094312 transcript_region:SL2.40ch01:87091511..87094312+ go_terms:GO:0030528 functional_description:"Transcription factor bHLH95 (AHRD V1 *-** BH095_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00025682g0014.1 protein AED:0.26 eAED:0.26 QI:209|0.66|0.85|1|0.66|0.57|7|448|245; (*GB) gi|1619300|emb|CAA64565.1| (e_value=7e-87) LRR protein [Solanum lycopersicum];; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=3e-60) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT5G21090.1 (e_value=6e-81) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7164758-7166904 FORWARD LENGTH=218;; (*ITAG) Solyc10g081190.1.1 (e_value=1e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61639261-61643658 transcript_region:SL2.40ch10:61639261..61643658+ go_terms:GO:0004675 functional_description:"Lrr, resistance protein fragment"; GO:0004675 NbS00025682g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|518|387; (*GB) gi|356571814|ref|XP_003554067.1| (e_value=9e-90) PREDICTED: protein grpE-like [Glycine max];; (*SWP) sp|Q8DJB3|GRPE_THEEB (e_value=6e-33) Protein grpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1;; (*TAIR) AT5G17710.1 (e_value=7e-83) | Symbols: EMB1241 | Co-chaperone GrpE family protein | chr5:5839560-5841639 REVERSE LENGTH=324;; (*ITAG) Solyc10g081240.1.1 (e_value=3e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61667783-61677144 transcript_region:SL2.40ch10:61667783..61677144+ go_terms:GO:0005515,GO:0006457,GO:0005739 functional_description:"Protein grpE (AHRD V1 *-*- B0CAY8_ACAM1); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005515,GO:0006457,GO:0005739 NbS00025682g0012.1 protein AED:0.08 eAED:0.28 QI:0|0.2|0|0.83|0.2|0.16|6|0|1821; (*GB) gi|359480986|ref|XP_002266794.2| (e_value=2e-84) PREDICTED: uncharacterized protein LOC100248405 [Vitis vinifera];; (*TAIR) AT5G17910.2 (e_value=5e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). | chr5:5927906-5932292 FORWARD LENGTH=1342;; (*ITAG) Solyc10g081200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61646960-61653636 transcript_region:SL2.40ch10:61646960..61653636- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)"; NbS00009774g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|217071800|gb|ACJ84260.1| (e_value=2e-22) unknown [Medicago truncatula];; (*TAIR) AT2G10940.2 (e_value=1e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:4311160-4312035 REVERSE LENGTH=291;; (*ITAG) Solyc07g007860.1.1 (e_value=3e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2542742-2543158 transcript_region:SL2.40ch07:2542742..2543158+ go_terms:GO:0008289 functional_description:"Proline rich protein (Fragment) (AHRD V1 ---- P93274_MALDO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00058755g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|190 NbS00000472g0003.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0|0.5|0.33|0.5|4|0|231; (*GB) gi|115462129|ref|NP_001054664.1| (e_value=2e-31) Os05g0150300 [Oryza sativa Japonica Group];; (*SWP) sp|Q7G8Y3|ISW2_ORYSJ (e_value=6e-32) Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2;; (*TAIR) AT3G06400.1 (e_value=2e-32) | Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1055;; (*ITAG) Solyc01g067390.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:68257411-68268333 transcript_region:SL2.40ch01:68257411..68268333+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00000472g0102.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|187 NbS00004581g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|246; (*GB) gi|3336908|emb|CAA05884.1| (e_value=9e-120) maturase [Solanum tuberosum];; (*ITAG) ATMG00520.1 (e_value=4e-100) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc09g056070.1.1 (e_value=2e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:42679284-42680773 transcript_region:SL2.40ch09:42679284..42680773- functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00004581g0007.1 protein AED:0.26 eAED:0.27 QI:304|0.61|0.64|0.92|0.92|0.85|14|673|538; (*GB) gi|224099921|ref|XP_002311675.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y2H1|ST38L_HUMAN (e_value=5e-103) Serine/threonine-protein kinase 38-like OS=Homo sapiens GN=STK38L PE=1 SV=3;; (*TAIR) AT4G14350.2 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:8256449-8259934 REVERSE LENGTH=551;; (*ITAG) Solyc09g090200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65106209-65114248 transcript_region:SL2.40ch09:65106209..65114248+ go_terms:GO:0004711 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 **** B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00029153g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|103 NbS00029153g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|65 NbS00029255g0011.1 protein AED:0.10 eAED:0.10 QI:0|1|0.8|1|0.75|0.6|5|395|172; (*GB) gi|461449|sp|P33490.1|ABP1_TOBAC (e_value=2e-114) RecName: Full=Auxin-binding protein T85; Short=ABP; Flags: Precursor;; (*SWP) sp|P33490|ABP1_TOBAC (e_value=6e-116) Auxin-binding protein T85 OS=Nicotiana tabacum GN=T85 PE=3 SV=1;; (*TAIR) AT4G02980.1 (e_value=1e-88) | Symbols: ABP1, ABP | endoplasmic reticulum auxin binding protein 1 | chr4:1319902-1321449 REVERSE LENGTH=198;; (*ITAG) Solyc06g084390.2.1 (e_value=1e-113) genomic_reference:SL2.40ch06 gene_region:45813049-45815938 transcript_region:SL2.40ch06:45813049..45815938- go_terms:GO:0005515 functional_description:"ER auxin binding protein 1 (AHRD V1 **** Q9ZRX6_SOLLC); contains Interpro domain(s) IPR000886 Endoplasmic reticulum, targeting sequence "; GO:0005515 NbS00029255g0010.1 protein AED:0.12 eAED:0.12 QI:75|1|0.5|1|1|1|2|0|168; (*GB) gi|356535711|ref|XP_003536387.1| (e_value=3e-68) PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Glycine max];; (*SWP) sp|Q9LYB9|MBD4_ARATH (e_value=1e-61) Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=MBD4 PE=2 SV=1;; (*TAIR) AT3G63030.1 (e_value=9e-63) | Symbols: MBD4 | methyl-CPG-binding domain 4 | chr3:23295394-23296425 FORWARD LENGTH=186;; (*ITAG) Solyc06g084400.2.1 (e_value=1e-83) genomic_reference:SL2.40ch06 gene_region:45820654-45821484 transcript_region:SL2.40ch06:45820654..45821484+ go_terms:GO:0008327,GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 **** A9PE20_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0008327,GO:0051747 NbS00029255g0014.1 protein AED:0.04 eAED:0.04 QI:209|0.83|0.85|1|0.66|0.71|7|314|543; (*GB) gi|255567650|ref|XP_002524804.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02940.1 (e_value=2e-153) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569;; (*ITAG) Solyc06g084380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45809712-45812769 transcript_region:SL2.40ch06:45809712..45812769+ go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 ***- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00029255g0019.1 protein AED:0.28 eAED:0.30 QI:0|0.6|0.33|1|0.8|0.83|6|0|229; (*GB) gi|255567596|ref|XP_002524777.1| (e_value=7e-85) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=5e-74) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G35960.1 (e_value=1e-83) | Symbols: | Protein kinase family protein | chr5:14108524-14110536 REVERSE LENGTH=429;; (*ITAG) Solyc09g074250.2.1 (e_value=4e-114) genomic_reference:SL2.40ch09 gene_region:61525297-61527952 transcript_region:SL2.40ch09:61525297..61527952+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00029255g0012.1 protein AED:0.34 eAED:0.34 QI:16|1|1|1|0.4|0.66|6|369|151; (*GB) gi|359479780|ref|XP_002272153.2| (e_value=2e-65) PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=1e-60) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=8e-62) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g080540.2.1 (e_value=4e-60) genomic_reference:SL2.40ch01 gene_region:72299197-72301457 transcript_region:SL2.40ch01:72299197..72301457+ go_terms:GO:0009927 functional_description:"Histidine-containing phosphotransfer protein (AHRD V1 **** Q94KS0_CATRO); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00019830g0005.1 protein AED:0.34 eAED:0.34 QI:103|1|1|1|1|1|10|400|288; (*GB) gi|225456849|ref|XP_002276527.1| (e_value=1e-138) PREDICTED: uncharacterized protein LOC100243259 [Vitis vinifera];; (*SWP) sp|Q0WWT7|STR11_ARATH (e_value=1e-123) Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1;; (*TAIR) AT4G24750.1 (e_value=9e-125) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:12758422-12760749 REVERSE LENGTH=292;; (*ITAG) Solyc12g021340.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15682901-15690387 transcript_region:SL2.40ch12:15682901..15690387- functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00019830g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|176; (*GB) gi|297733678|emb|CBI14925.3| (e_value=1e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|P37118|C71A2_SOLME (e_value=8e-73) Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1;; (*TAIR) AT3G48280.1 (e_value=5e-54) | Symbols: CYP71A25 | cytochrome P450, family 71, subfamily A, polypeptide 25 | chr3:17879594-17881164 FORWARD LENGTH=490;; (*ITAG) Solyc03g111940.2.1 (e_value=1e-76) genomic_reference:SL2.40ch03 gene_region:56563767-56565607 transcript_region:SL2.40ch03:56563767..56565607+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00061513g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|332; (*GB) gi|27529846|dbj|BAC53938.1| (e_value=1e-171) Myb-like protein [Nicotiana tabacum];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=2e-66) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=7e-74) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc04g078420.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60755266-60756252 transcript_region:SL2.40ch04:60755266..60756252- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00030112g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.7|1|0.55|0.6|10|410|370; (*GB) gi|359484818|ref|XP_003633169.1| (e_value=2e-150) PREDICTED: autophagy-related protein 18-like [Vitis vinifera];; (*SWP) sp|Q5QA94|ATG18_PICAN (e_value=5e-58) Autophagy-related protein 18 OS=Pichia angusta GN=ATG18 PE=3 SV=1;; (*TAIR) AT4G30510.1 (e_value=7e-123) | Symbols: ATATG18B, ATG18B, G18B | homolog of yeast autophagy 18 (ATG18) B | chr4:14905299-14906915 REVERSE LENGTH=312;; (*ITAG) Solyc07g006120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:973639-979759 transcript_region:SL2.40ch07:973639..979759+ go_terms:GO:0032266 functional_description:"WD repeat domain phosphoinositide-interacting protein (AHRD V1 **-- C0SB49_PARBP); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00037918g0009.1 protein AED:0.26 eAED:0.26 QI:101|1|1|1|0.33|0.5|4|267|95; (*GB) gi|255551062|ref|XP_002516579.1| (e_value=2e-57) 60S ribosomal protein L37, putative [Ricinus communis];; (*SWP) sp|Q8LFH7|RL371_ARATH (e_value=1e-56) 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1;; (*TAIR) AT1G15250.1 (e_value=8e-58) | Symbols: | Zinc-binding ribosomal protein family protein | chr1:5248825-5249381 REVERSE LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=3e-63) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00037918g0008.1 protein AED:0.19 eAED:0.19 QI:185|1|1|1|1|1|4|507|319; (*GB) gi|225430037|ref|XP_002284246.1| (e_value=2e-147) PREDICTED: GTP-binding protein At2g22870 [Vitis vinifera];; (*SWP) sp|O81004|Y2287_ARATH (e_value=2e-97) GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2;; (*TAIR) AT5G11480.1 (e_value=4e-141) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:3669350-3671471 REVERSE LENGTH=318;; (*ITAG) Solyc08g068200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54515177-54519689 transcript_region:SL2.40ch08:54515177..54519689- go_terms:GO:0043022,GO:0003924 functional_description:"GTP binding protein (AHRD V1 **** D7M3R1_ARALY); contains Interpro domain(s) IPR019987 GTP-binding protein, ribosome biogenesis, YsxC "; GO:0043022,GO:0003924 NbS00005772g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|261; (*GB) gi|224082414|ref|XP_002306685.1| (e_value=1e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGD5|MKS1_ARATH (e_value=1e-13) Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2;; (*TAIR) AT3G18690.1 (e_value=1e-14) | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222;; (*ITAG) Solyc06g060470.1.1 (e_value=3e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34887486-34888208 transcript_region:SL2.40ch06:34887486..34888208+ go_terms:GO:0005515 functional_description:"VQ motif family protein (AHRD V1 *-*- B6SZE5_MAIZE); contains Interpro domain(s) IPR008889 VQ "; GO:0005515 NbS00006781g0008.1 protein AED:0.04 eAED:0.04 QI:3|1|1|1|0.33|0.75|4|611|160; (*GB) gi|255549886|ref|XP_002515994.1| (e_value=7e-43) Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis];; (*SWP) sp|P0CM86|COX19_CRYNJ (e_value=2e-16) Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=COX19 PE=3 SV=1;; (*TAIR) AT1G66590.1 (e_value=1e-42) | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidase 19-1 | chr1:24841191-24842157 FORWARD LENGTH=98;; (*ITAG) Solyc12g044380.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44736444-44739232 transcript_region:SL2.40ch12:44736444..44739232- functional_description:"Cytochrome c oxidase assembly protein COX19 (AHRD V1 ***- B6TLQ2_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; NbS00006781g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|248; (*GB) gi|292653543|gb|ADE34289.1| (e_value=3e-125) aquaporin TIP2;3 [Gossypium hirsutum];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=1e-118) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=1e-119) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=1e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbC26028711g0002.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.4|0.8|1|0.8|5|0|226; (*GB) gi|297742187|emb|CBI33974.3| (e_value=2e-107) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G17140.1 (e_value=1e-98) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4216;; (*ITAG) Solyc08g077500.2.1 (e_value=2e-142) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00038860g0018.1 protein AED:0.04 eAED:0.04 QI:170|0.75|0.6|1|0.5|0.6|5|381|171; (*GB) gi|225437334|ref|XP_002264898.1| (e_value=2e-59) PREDICTED: uncharacterized protein OsI_027940-like [Vitis vinifera];; (*SWP) sp|P0C8Z0|Y8359_ORYSI (e_value=2e-54) Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2;; (*TAIR) AT4G02450.2 (e_value=1e-49) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc09g075010.2.1 (e_value=1e-58) genomic_reference:SL2.40ch09 gene_region:62288817-62293083 transcript_region:SL2.40ch09:62288817..62293083- functional_description:"Prostaglandin E synthase 3 (AHRD V1 *--- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00038860g0017.1 protein AED:0.38 eAED:0.38 QI:5|0.66|0.53|0.84|0.91|0.92|13|0|288; (*GB) gi|148909953|gb|ABR18062.1| (e_value=2e-85) unknown [Picea sitchensis];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=4e-74) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G02840.3 (e_value=3e-75) | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303;; (*ITAG) Solyc09g075090.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62395517-62400644 transcript_region:SL2.40ch09:62395517..62400644- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00038860g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.57|0.57|0.83|0.71|7|383|223; (*GB) gi|359480262|ref|XP_002265742.2| (e_value=7e-76) PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera];; (*TAIR) AT2G47710.1 (e_value=3e-67) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc06g009050.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:2979605-2982262 transcript_region:SL2.40ch06:2979605..2982262+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00038860g0016.1 protein AED:0.21 eAED:0.21 QI:134|1|0.66|1|1|1|3|0|213; (*GB) gi|2290782|gb|AAB65163.1| (e_value=1e-141) glutathione S-transferase, class-phi [Solanum commersonii];; (*SWP) sp|P46423|GSTF_HYOMU (e_value=2e-140) Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1;; (*TAIR) AT2G47730.1 (e_value=3e-90) | Symbols: ATGSTF8, ATGSTF5, GST6, GSTF8 | glutathione S-transferase phi 8 | chr2:19558213-19559266 FORWARD LENGTH=263;; (*ITAG) Solyc06g009020.2.1 (e_value=2e-142) genomic_reference:SL2.40ch06 gene_region:2965668-2967884 transcript_region:SL2.40ch06:2965668..2967884+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** A5YWI8_SOLCO); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00029405g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|391; (*GB) gi|224119696|ref|XP_002318137.1| (e_value=5e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17530.1 (e_value=1e-13) | Symbols: | F-box and associated interaction domains-containing protein | chr3:6000860-6002026 FORWARD LENGTH=388;; (*ITAG) Solyc06g059810.1.1 (e_value=1e-127) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34103561-34110110 transcript_region:SL2.40ch06:34103561..34110110+ functional_description:"F-box family protein (AHRD V1 *-*- B9N8U5_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00029405g0010.1 protein AED:0.31 eAED:0.34 QI:0|0.62|0.33|1|0.37|0.55|9|557|515; (*GB) gi|255558468|ref|XP_002520259.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G76990.5 (e_value=0.0) | Symbols: ACR3 | ACT domain repeat 3 | chr1:28933387-28935179 FORWARD LENGTH=453;; (*ITAG) Solyc06g059800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34097108-34103291 transcript_region:SL2.40ch06:34097108..34103291+ go_terms:GO:0008152 functional_description:"Protein-P-II uridylyltransferase (AHRD V1 *--- Q1YFE2_MOBAS); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00029405g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|104; (*GB) gi|116778592|gb|ABK20926.1| (e_value=9e-21) unknown [Picea sitchensis];; (*SWP) sp|Q41073|NLTP_PINTA (e_value=6e-21) Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G33355.2 (e_value=1e-13) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc06g059790.2.1 (e_value=1e-36) genomic_reference:SL2.40ch06 gene_region:34079809-34080659 transcript_region:SL2.40ch06:34079809..34080659+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** A9NJW5_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbC25588469g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|219|118; (*GB) gi|359496966|ref|XP_002269916.2| (e_value=1e-21) PREDICTED: aspartic proteinase-like protein 1-like, partial [Vitis vinifera];; (*TAIR) AT2G17760.1 (e_value=4e-13) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:7713488-7716269 FORWARD LENGTH=513;; (*ITAG) Solyc02g083460.2.1 (e_value=2e-59) genomic_reference:SL2.40ch02 gene_region:41436441-41440462 transcript_region:SL2.40ch02:41436441..41440462+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LAA8_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00045508g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.7|1|0.55|0.9|10|294|510; (*GB) gi|296082464|emb|CBI21469.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=3e-176) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT5G10080.1 (e_value=2e-177) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3150843-3153380 FORWARD LENGTH=528;; (*ITAG) Solyc04g054490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51757496-51766115 transcript_region:SL2.40ch04:51757496..51766115+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M2T2_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00030328g0012.1 protein AED:0.12 eAED:0.22 QI:0|0|0|1|0.25|0.2|5|0|389; (*GB) gi|225428100|ref|XP_002278196.1| (e_value=1e-131) PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera];; (*SWP) sp|O04376|2A5B_ARATH (e_value=2e-83) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1;; (*TAIR) AT3G09880.1 (e_value=2e-84) | Symbols: ATB' BETA | Protein phosphatase 2A regulatory B subunit family protein | chr3:3029902-3031931 FORWARD LENGTH=499;; (*ITAG) Solyc01g111790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89732277-89733879 transcript_region:SL2.40ch01:89732277..89733879- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00030328g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.96|0.92|1|0.77|0.85|28|225|872; (*GB) gi|356536398|ref|XP_003536725.1| (e_value=0.0) PREDICTED: transportin-1-like isoform 1 [Glycine max];; (*SWP) sp|Q92973|TNPO1_HUMAN (e_value=0.0) Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2;; (*TAIR) AT2G16950.2 (e_value=0.0) | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891;; (*ITAG) Solyc01g111780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89713800-89731648 transcript_region:SL2.40ch01:89713800..89731648+ go_terms:GO:0008320 functional_description:"Importin beta-2 subunit (AHRD V1 **-- C5JY88_AJEDS); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00030328g0011.1 protein AED:0.14 eAED:0.39 QI:38|0|0|1|0|0|4|0|225; (*GB) gi|296088474|emb|CBI37465.3| (e_value=7e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G31830.1 (e_value=1e-67) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc01g111800.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:89734475-89736097 transcript_region:SL2.40ch01:89734475..89736097- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00037528g0009.1 protein AED:0.07 eAED:0.07 QI:70|1|1|1|0.4|0.66|6|51|535; (*GB) gi|297744034|emb|CBI37004.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=0.0) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G02460.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:504897-507099 REVERSE LENGTH=491;; (*ITAG) Solyc01g079130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70719258-70721952 transcript_region:SL2.40ch01:70719258..70721952+ go_terms:GO:0005975,GO:0006364 functional_description:"Polygalacturonase (AHRD V1 ***- B6TPQ7_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975,GO:0006364 NbS00024534g0001.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.33|1|1|3|0|239; (*ITAG) Solyc11g068410.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00037822g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|132; (*GB) gi|217074768|gb|ACJ85744.1| (e_value=2e-62) unknown [Medicago truncatula];; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=1e-60) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT1G07870.2 (e_value=1e-61) | Symbols: | Protein kinase superfamily protein | chr1:2428942-2431843 REVERSE LENGTH=538;; (*ITAG) Solyc11g072660.1.1 (e_value=2e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52967548-52971703 transcript_region:SL2.40ch11:52967548..52971703+ go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00037822g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.16|0|0.28|1|1|7|0|197; (*GB) gi|379987682|gb|AFD22621.1| (e_value=3e-109) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|P84634|DCL4_ARATH (e_value=5e-47) Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2;; (*TAIR) AT5G20320.2 (e_value=3e-49) | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1688;; (*ITAG) Solyc07g005030.2.1 (e_value=2e-102) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00019824g0005.1 protein AED:0.05 eAED:0.17 QI:0|0|0|1|1|1|2|0|193; (*GB) gi|357482951|ref|XP_003611762.1| (e_value=3e-29) hypothetical protein MTR_5g017580 [Medicago truncatula];; (*TAIR) AT5G66800.1 (e_value=6e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671433-26672116 FORWARD LENGTH=183;; (*ITAG) Solyc02g065020.1.1 (e_value=6e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30718020-30718665 transcript_region:SL2.40ch02:30718020..30718665+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021213g0010.1 protein AED:0.14 eAED:0.27 QI:52|0.6|0.66|1|0.8|0.66|6|0|261; (*GB) gi|224128910|ref|XP_002320451.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XJK9|CC026_DANRE (e_value=2e-14) Uncharacterized protein C3orf26 homolog OS=Danio rerio GN=zgc:101814 PE=2 SV=1;; (*TAIR) AT2G43110.1 (e_value=1e-78) | Symbols: | unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:17922067-17924291 FORWARD LENGTH=288;; (*ITAG) Solyc05g053880.2.1 (e_value=2e-96) genomic_reference:SL2.40ch05 gene_region:63058550-63062825 transcript_region:SL2.40ch05:63058550..63062825+ functional_description:"cDNA FLJ42396 fis clone ASTRO2001107 (AHRD V1 *-*- B3KW72_HUMAN)"; NbS00021213g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.42|0.5|0.75|0.42|0.5|8|36|295; (*GB) gi|356568907|ref|XP_003552649.1| (e_value=5e-97) PREDICTED: aspartic proteinase-like protein 2-like [Glycine max];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-61) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=1e-95) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc05g053900.2.1 (e_value=5e-115) genomic_reference:SL2.40ch05 gene_region:63066251-63072361 transcript_region:SL2.40ch05:63066251..63072361- go_terms:GO:0005515 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6TNP6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00021213g0002.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|359477998|ref|XP_003632051.1| (e_value=2e-107) PREDICTED: UDP-glycosyltransferase 92A1-like [Vitis vinifera];; (*SWP) sp|Q9LXV0|U92A1_ARATH (e_value=5e-63) UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana GN=UGT92A1 PE=2 SV=1;; (*TAIR) AT5G12890.1 (e_value=4e-64) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4069658-4071124 REVERSE LENGTH=488;; (*ITAG) Solyc05g053890.1.1 (e_value=3e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63063554-63065233 transcript_region:SL2.40ch05:63063554..63065233- go_terms:GO:0080044 functional_description:"Glucosyltransferase-like protein (AHRD V1 *-** Q9LXV0_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00045657g0004.1 protein AED:0.28 eAED:0.28 QI:0|1|0.85|1|0.66|0.85|7|220|509; (*GB) gi|255562015|ref|XP_002522016.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G18460.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr5:6123205-6126505 FORWARD LENGTH=430;; (*ITAG) Solyc04g050490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46494013-46503692 transcript_region:SL2.40ch04:46494013..46503692- functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00052018g0011.1 protein AED:0.02 eAED:0.02 QI:205|1|1|1|1|1|4|1160|266; (*GB) gi|224136296|ref|XP_002326826.1| (e_value=8e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25170.1 (e_value=9e-20) | Symbols: | Uncharacterised conserved protein (UCP012943) | chr4:12909740-12911389 FORWARD LENGTH=344;; (*ITAG) Solyc01g090680.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:76086753-76088289 transcript_region:SL2.40ch01:76086753..76088289- functional_description:"Genomic DNA chromosome 5 TAC clone K11J9 (AHRD V1 *-*- Q9FKH0_ARATH)"; NbS00052018g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0.5|0.33|3|156|443 NbS00052018g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|356495893|ref|XP_003516805.1| (e_value=8e-58) PREDICTED: elongation factor G, mitochondrial-like [Glycine max];; (*SWP) sp|Q9C641|EFGM_ARATH (e_value=1e-57) Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1;; (*TAIR) AT2G45030.1 (e_value=1e-59) | Symbols: | Translation elongation factor EFG/EF2 protein | chr2:18572411-18576756 FORWARD LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=8e-87) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbS00052018g0015.1 protein AED:0.26 eAED:0.28 QI:0|0.7|0.63|1|0.8|0.90|11|0|701; (*GB) gi|255541132|ref|XP_002511630.1| (e_value=1e-109) structural constituent of nuclear pore, putative [Ricinus communis];; (*SWP) sp|P17955|NUP62_RAT (e_value=1e-18) Nuclear pore glycoprotein p62 OS=Rattus norvegicus GN=Nup62 PE=1 SV=1;; (*TAIR) AT2G45000.1 (e_value=2e-109) | Symbols: EMB2766 | structural constituent of nuclear pore | chr2:18564156-18567632 FORWARD LENGTH=739;; (*ITAG) Solyc01g090670.2.1 (e_value=7e-123) genomic_reference:SL2.40ch01 gene_region:76076259-76086586 transcript_region:SL2.40ch01:76076259..76086586+ go_terms:GO:0005643 functional_description:"Nuclear pore glycoprotein p62 (AHRD V1 *--- C0HBQ2_SALSA); contains Interpro domain(s) IPR007758 Nucleoporin, Nsp1-like, C-terminal "; GO:0005643 NbS00032815g0012.1 protein AED:0.27 eAED:0.27 QI:267|1|1|1|0.5|0.66|3|402|331; (*GB) gi|359490831|ref|XP_003634173.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100853133 [Vitis vinifera];; (*TAIR) AT5G24500.1 (e_value=9e-16) | Symbols: | unknown protein; Has 133 Blast hits to 129 proteins in 40 species: Archae - 2; Bacteria - 0; Metazoa - 60; Fungi - 5; Plants - 29; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | chr5:8367468-8368715 REVERSE LENGTH=334;; (*ITAG) Solyc03g081310.2.1 (e_value=3e-152) genomic_reference:SL2.40ch03 gene_region:45730362-45734716 transcript_region:SL2.40ch03:45730362..45734716- functional_description:"Genomic DNA chromosome 5 TAC clone K18P6 (AHRD V1 ***- Q9FLV2_ARATH)"; NbS00032815g0013.1 protein AED:0.26 eAED:0.30 QI:0|0.33|0.25|1|0.66|0.5|4|0|504; (*GB) gi|359490831|ref|XP_003634173.1| (e_value=2e-170) PREDICTED: uncharacterized protein LOC100853133 [Vitis vinifera];; (*TAIR) AT5G54180.1 (e_value=1e-147) | Symbols: PTAC15 | plastid transcriptionally active 15 | chr5:21988544-21990183 FORWARD LENGTH=500;; (*ITAG) Solyc03g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45727509-45729457 transcript_region:SL2.40ch03:45727509..45729457- functional_description:"At4g38160-like protein (Fragment) (AHRD V1 *--- C0JEI4_9BRAS); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00032815g0006.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|64 NbS00026662g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|155 NbS00022594g0008.1 protein AED:0.20 eAED:0.20 QI:36|0.8|0.66|1|0.8|0.83|6|220|398; (*GB) gi|225455706|ref|XP_002266571.1| (e_value=2e-163) PREDICTED: isoaspartyl peptidase/L-asparaginase 1 [Vitis vinifera];; (*SWP) sp|P30364|ASPG_LUPAN (e_value=3e-158) Isoaspartyl peptidase/L-asparaginase OS=Lupinus angustifolius PE=2 SV=1;; (*TAIR) AT5G08100.1 (e_value=2e-153) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:2593242-2594586 REVERSE LENGTH=315;; (*ITAG) Solyc06g069400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39550930-39555145 transcript_region:SL2.40ch06:39550930..39555145+ go_terms:GO:0003948 functional_description:"N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 *-** ASPG_ELIMR); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbS00022594g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.25|1|1|4|0|304; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-28) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=4e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019485g0004.1 protein AED:0.22 eAED:0.22 QI:185|0.88|0.9|1|1|1|10|402|373; (*GB) gi|315307974|gb|ADU04390.1| (e_value=0.0) SGT1 [Nicotiana attenuata];; (*SWP) sp|Q0JL44|SGT1_ORYSJ (e_value=2e-151) Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1;; (*TAIR) AT4G11260.1 (e_value=6e-145) | Symbols: ATSGT1B, ETA3, RPR1, EDM1, SGT1B | phosphatase-related | chr4:6851515-6853719 REVERSE LENGTH=358;; (*ITAG) Solyc03g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2200919-2205536 transcript_region:SL2.40ch03:2200919..2205536+ go_terms:GO:0005515 functional_description:"SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS "; GO:0005515 NbS00014642g0001.1 protein AED:0.22 eAED:0.30 QI:0|0.33|0.2|1|1|1|10|0|1227; (*GB) gi|359478703|ref|XP_002275617.2| (e_value=0.0) PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera];; (*SWP) sp|P93028|UBE11_ARATH (e_value=0.0) Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1;; (*TAIR) AT2G30110.1 (e_value=0.0) | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activating enzyme 1 | chr2:12852632-12857369 REVERSE LENGTH=1080;; (*ITAG) Solyc06g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00000929g0012.1 protein AED:0.36 eAED:0.38 QI:0|0.5|0.66|1|0|0.33|3|193|182; (*GB) gi|224099821|ref|XP_002311634.1| (e_value=2e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUJ3|RDM1_ARATH (e_value=1e-49) Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1;; (*TAIR) AT3G22680.1 (e_value=1e-50) | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1 | chr3:8019785-8020374 FORWARD LENGTH=163;; (*ITAG) Solyc09g082480.1.1 (e_value=3e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63589809-63590293 transcript_region:SL2.40ch09:63589809..63590293- go_terms:GO:0043621 functional_description:"Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950 "; GO:0043621 NbS00000929g0009.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0.5|0.33|3|0|134; (*GB) gi|255567526|ref|XP_002524742.1| (e_value=2e-31) 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis];; (*SWP) sp|P56707|SMTA_ASTBI (e_value=2e-31) Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1;; (*TAIR) AT3G63250.2 (e_value=3e-32) | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase 2 | chr3:23370575-23371974 REVERSE LENGTH=293;; (*ITAG) Solyc09g082460.2.1 (e_value=1e-35) genomic_reference:SL2.40ch09 gene_region:63571846-63576586 transcript_region:SL2.40ch09:63571846..63576586- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9HUS6_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00000929g0008.1 protein AED:0.27 eAED:0.30 QI:0|0|0|1|1|1|2|0|363; (*GB) gi|224107977|ref|XP_002314675.1| (e_value=3e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUJ2|PP249_ARATH (e_value=1e-121) Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1;; (*TAIR) AT3G22690.2 (e_value=8e-123) | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842;; (*ITAG) Solyc09g082450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63567141-63569654 transcript_region:SL2.40ch09:63567141..63569654- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000929g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|297737088|emb|CBI26289.3| (e_value=3e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUJ2|PP249_ARATH (e_value=5e-80) Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1;; (*TAIR) AT3G22690.2 (e_value=4e-81) | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842;; (*ITAG) Solyc09g082450.1.1 (e_value=7e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63567141-63569654 transcript_region:SL2.40ch09:63567141..63569654- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00025192g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.2|0.33|1|0.8|0.83|6|364|700; (*GB) gi|225458840|ref|XP_002285329.1| (e_value=0.0) PREDICTED: tetratricopeptide repeat protein 7A-like [Vitis vinifera];; (*SWP) sp|Q9ULT0|TTC7A_HUMAN (e_value=3e-15) Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1 SV=3;; (*TAIR) AT1G27460.1 (e_value=0.0) | Symbols: NPGR1 | no pollen germination related 1 | chr1:9534977-9537424 FORWARD LENGTH=694;; (*ITAG) Solyc04g077830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60304590-60307474 transcript_region:SL2.40ch04:60304590..60307474- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* Q7XJB9_ORYSI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00025192g0012.1 protein AED:0.23 eAED:0.23 QI:878|0.4|0.5|1|0.6|0.83|6|99|353; (*GB) gi|359491959|ref|XP_002285336.2| (e_value=2e-124) PREDICTED: A-kinase anchor protein 17A-like [Vitis vinifera];; (*TAIR) AT1G59600.1 (e_value=2e-119) | Symbols: ZCW7 | ZCW7 | chr1:21889927-21891910 REVERSE LENGTH=324;; (*ITAG) Solyc04g077820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60300380-60303647 transcript_region:SL2.40ch04:60300380..60303647- functional_description:"ZCW7 protein (AHRD V1 ***- Q9SLT8_ARATH)"; NbS00058894g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|328; (*GB) gi|209954725|dbj|BAG80553.1| (e_value=2e-135) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=4e-66) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT4G27570.1 (e_value=6e-34) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:13763657-13765018 REVERSE LENGTH=453;; (*ITAG) Solyc03g071850.1.1 (e_value=2e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:41956163-41957524 transcript_region:SL2.40ch03:41956163..41957524+ go_terms:GO:0016757 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *-*- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00047702g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|9|374|686; (*GB) gi|225425270|ref|XP_002267902.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Vitis vinifera];; (*SWP) sp|Q8VYZ0|ORTH2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1;; (*TAIR) AT1G57820.1 (e_value=0.0) | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645;; (*ITAG) Solyc05g023680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:28960621-28965003 transcript_region:SL2.40ch05:28960621..28965003+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase UHRF1 (AHRD V1 *--* UHRF1_RAT); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0004842 NbS00037402g0014.1 protein AED:0.14 eAED:0.14 QI:49|0.69|0.42|1|0.69|0.57|14|1185|774; (*GB) gi|255551487|ref|XP_002516789.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G23590.1 (e_value=0.0) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc01g080200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71915886-71927533 transcript_region:SL2.40ch01:71915886..71927533- functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00037402g0015.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0|1|0.66|0.5|4|0|735; (*GB) gi|225432514|ref|XP_002277532.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Vitis vinifera];; (*SWP) sp|P0C8Q8|PP394_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1;; (*TAIR) AT5G19020.1 (e_value=0.0) | Symbols: MEF18 | mitochondrial editing factor 18 | chr5:6352771-6354828 REVERSE LENGTH=685;; (*ITAG) Solyc01g080190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71913612-71915846 transcript_region:SL2.40ch01:71913612..71915846+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LYJ7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023135g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|344; (*GB) gi|225459338|ref|XP_002284195.1| (e_value=4e-110) PREDICTED: F-box protein At1g78100-like [Vitis vinifera];; (*SWP) sp|Q9C9S2|FB91_ARATH (e_value=2e-99) F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1;; (*TAIR) AT1G78100.1 (e_value=1e-100) | Symbols: | F-box family protein | chr1:29387907-29388911 FORWARD LENGTH=334;; (*ITAG) Solyc04g072930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57525979-57527001 transcript_region:SL2.40ch04:57525979..57527001+ functional_description:"F-box family protein (AHRD V1 ***- D7KV76_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023135g0014.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0|2|0|297; (*GB) gi|225459336|ref|XP_002284185.1| (e_value=1e-73) PREDICTED: uncharacterized protein LOC100264413 [Vitis vinifera];; (*TAIR) AT1G78110.1 (e_value=2e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). | chr1:29391879-29392907 FORWARD LENGTH=342;; (*ITAG) Solyc04g072940.2.1 (e_value=1e-118) genomic_reference:SL2.40ch04 gene_region:57535270-57536930 transcript_region:SL2.40ch04:57535270..57536930+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023135g0013.1 protein AED:0.25 eAED:0.31 QI:47|0.33|0.14|1|0.33|0.57|7|422|360; (*GB) gi|302142991|emb|CBI20286.3| (e_value=8e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G00160.1 (e_value=2e-14) | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:63465-65365 FORWARD LENGTH=453;; (*ITAG) Solyc00g269810.1.1 (e_value=3e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20570950-20572723 transcript_region:SL2.40ch00:20570950..20572723- functional_description:"F-box family protein (AHRD V1 *-*- D7LSF9_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016459g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|0.66|1|7|417|402; (*GB) gi|359495902|ref|XP_002272590.2| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9XGA0|KPRS3_SPIOL (e_value=0.0) Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1;; (*TAIR) AT1G10700.1 (e_value=0.0) | Symbols: PRS3 | phosphoribosyl pyrophosphate (PRPP) synthase 3 | chr1:3554157-3556274 FORWARD LENGTH=411;; (*ITAG) Solyc04g039620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:29665590-29682288 transcript_region:SL2.40ch04:29665590..29682288+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- B6SK13_MAIZE); contains Interpro domain(s) IPR000836 Phosphoribosyltransferase "; GO:0042803 NbS00016459g0003.1 protein AED:0.55 eAED:0.80 QI:0|-1|0|1|-1|1|1|0|618; (*GB) gi|356497349|ref|XP_003517523.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100779659 [Glycine max];; (*TAIR) AT3G26600.1 (e_value=0.0) | Symbols: ARO4 | armadillo repeat only 4 | chr3:9769889-9771736 FORWARD LENGTH=615;; (*ITAG) Solyc02g083820.1.1 (e_value=1e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016459g0016.1 protein AED:0.11 eAED:0.11 QI:256|1|1|1|1|1|11|368|584; (*GB) gi|225470591|ref|XP_002274188.1| (e_value=0.0) PREDICTED: anthranilate phosphoribosyltransferase [Vitis vinifera];; (*SWP) sp|O66576|TRPD_AQUAE (e_value=2e-17) Anthranilate phosphoribosyltransferase OS=Aquifex aeolicus (strain VF5) GN=trpD PE=3 SV=1;; (*TAIR) AT1G70570.1 (e_value=0.0) | Symbols: | anthranilate phosphoribosyltransferase, putative | chr1:26608719-26612062 FORWARD LENGTH=595;; (*ITAG) Solyc04g025540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:21409249-21419957 transcript_region:SL2.40ch04:21409249..21419957+ go_terms:GO:0004048 functional_description:"Anthranilate phosphoribosyltransferase-like protein (AHRD V1 *-** Q3SM27_THIDA); contains Interpro domain(s) IPR000312 Glycosyl transferase, family 3 "; GO:0004048 NbS00001647g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.77|1|0.87|0.77|9|0|623; (*GB) gi|359476610|ref|XP_003631864.1| (e_value=0.0) PREDICTED: riboflavin biosynthesis protein RibD-like [Vitis vinifera];; (*SWP) sp|Q55158|RIBD_SYNY3 (e_value=4e-86) Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribD PE=3 SV=1;; (*TAIR) AT3G47390.2 (e_value=0.0) | Symbols: PHS1 | cytidine/deoxycytidylate deaminase family protein | chr3:17462094-17464655 FORWARD LENGTH=596;; (*ITAG) Solyc04g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53638377-53647853 transcript_region:SL2.40ch04:53638377..53647853+ go_terms:GO:0008835 functional_description:"Riboflavin biosynthesis protein RibD (AHRD V1 ***- B2J2B9_NOSP7); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0008835 NbS00001647g0009.1 protein AED:0.10 eAED:0.10 QI:240|1|1|1|0.55|0.5|10|429|588; (*GB) gi|16326137|dbj|BAB70512.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=1e-76) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT4G32730.2 (e_value=1e-76) | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | Homeodomain-like protein | chr4:15791039-15795643 FORWARD LENGTH=995;; (*ITAG) Solyc08g080580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61001617-61006067 transcript_region:SL2.40ch08:61001617..61006067- go_terms:GO:0003677,GO:0045449 functional_description:"Myb (AHRD V1 ***- Q948S4_TOBAC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00031474g0005.1 protein AED:0.16 eAED:0.18 QI:0|0.87|0.76|1|0.87|0.88|17|0|943; (*GB) gi|255555995|ref|XP_002519032.1| (e_value=0.0) double-stranded RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q5YDB6|CPL1_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1;; (*TAIR) AT4G21670.1 (e_value=0.0) | Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain phosphatase-like 1 | chr4:11511511-11516922 FORWARD LENGTH=967;; (*ITAG) Solyc02g078550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37786234-37796329 transcript_region:SL2.40ch02:37786234..37796329- go_terms:GO:0004647,GO:0019204 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 1 (AHRD V1 **** CPL1_ARATH); contains Interpro domain(s) IPR004274 NLI interacting factor "; GO:0004647,GO:0019204 NbS00005773g0004.1 protein AED:0.06 eAED:0.12 QI:0|0.75|0.8|1|0.75|0.8|5|454|543; (*GB) gi|255578224|ref|XP_002529980.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT4G00820.1 (e_value=1e-131) | Symbols: iqd17 | IQ-domain 17 | chr4:349300-351307 FORWARD LENGTH=534;; (*ITAG) Solyc10g005000.2.1 (e_value=2e-133) genomic_reference:SL2.40ch10 gene_region:4134-5923 transcript_region:SL2.40ch10:4134..5923- go_terms:GO:0005516 functional_description:"Os03g0648300 protein (Fragment) (AHRD V1 *--- Q0DPZ6_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00005773g0201.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|136 NbS00005773g0212.1 protein AED:0.02 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.66|3|0|323 NbS00005773g0209.1 protein AED:0.28 eAED:0.71 QI:372|0.2|0.16|1|0.8|0.83|6|0|364 NbS00001393g0005.1 protein AED:0.09 eAED:0.10 QI:36|1|0.83|1|1|1|6|521|641; (*GB) gi|225458810|ref|XP_002283295.1| (e_value=7e-159) PREDICTED: uncharacterized protein LOC100242050 [Vitis vinifera];; (*TAIR) AT1G49890.1 (e_value=5e-103) | Symbols: QWRF2 | Family of unknown function (DUF566) | chr1:18470282-18473463 FORWARD LENGTH=659;; (*ITAG) Solyc04g078000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60456888-60465519 transcript_region:SL2.40ch04:60456888..60465519- go_terms:GO:0005737 functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; GO:0005737 NbS00001393g0006.1 protein AED:0.22 eAED:0.24 QI:0|0.5|0|1|0|0|3|0|213; (*GB) gi|225458812|ref|XP_002285250.1| (e_value=3e-57) PREDICTED: LOB domain-containing protein 38 [Vitis vinifera];; (*SWP) sp|Q9SN23|LBD38_ARATH (e_value=4e-51) LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1;; (*TAIR) AT3G49940.1 (e_value=3e-52) | Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247;; (*ITAG) Solyc04g077990.2.1 (e_value=2e-109) genomic_reference:SL2.40ch04 gene_region:60452312-60453322 transcript_region:SL2.40ch04:60452312..60453322+ functional_description:"LOB domain protein 38 (AHRD V1 *-*- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00008031g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|171; (*GB) gi|76161006|gb|ABA40466.1| (e_value=5e-50) unknown [Solanum tuberosum];; (*TAIR) AT1G05770.1 (e_value=1e-24) | Symbols: | Mannose-binding lectin superfamily protein | chr1:1725547-1726250 REVERSE LENGTH=184;; (*ITAG) Solyc09g083030.1.1 (e_value=5e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64105104-64105607 transcript_region:SL2.40ch09:64105104..64105607- go_terms:GO:0005529 functional_description:"Myrosinase binding protein (AHRD V1 **-* P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00008031g0008.1 protein AED:0.05 eAED:0.05 QI:197|1|1|1|1|1|3|173|267; (*GB) gi|224054548|ref|XP_002298315.1| (e_value=1e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56Y11|DDPS2_ARATH (e_value=2e-88) Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2;; (*TAIR) AT5G58770.1 (e_value=1e-89) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr5:23734396-23735495 FORWARD LENGTH=310;; (*ITAG) Solyc06g076920.2.1 (e_value=6e-91) genomic_reference:SL2.40ch06 gene_region:44181604-44183702 transcript_region:SL2.40ch06:44181604..44183702- go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** D8G636_9CYAN); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00019437g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|358|352; (*GB) gi|359472655|ref|XP_002282967.2| (e_value=1e-79) PREDICTED: zinc finger CCCH domain-containing protein 15 [Vitis vinifera];; (*SWP) sp|Q9C9F5|C3H15_ARATH (e_value=6e-65) Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1;; (*TAIR) AT1G68200.1 (e_value=5e-66) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:25562118-25563948 FORWARD LENGTH=308;; (*ITAG) Solyc05g008670.2.1 (e_value=1e-142) genomic_reference:SL2.40ch05 gene_region:2957972-2959919 transcript_region:SL2.40ch05:2957972..2959919- go_terms:GO:0003700 functional_description:"Zinc finger protein 36 C3H type-like 1 (Fragment) (AHRD V1 *-*- C5H179_XANVI); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00030747g0002.1 protein AED:0.12 eAED:0.12 QI:260|0|0.5|0.5|1|0.5|2|0|23 NbS00012067g0008.1 protein AED:0.28 eAED:0.30 QI:194|0.66|0.71|1|0.66|0.71|7|122|347; (*GB) gi|225450157|ref|XP_002279882.1| (e_value=7e-158) PREDICTED: E3 ubiquitin-protein ligase makorin-like [Vitis vinifera];; (*SWP) sp|E0X9N4|C3H69_ARATH (e_value=4e-137) Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1;; (*TAIR) AT3G08505.1 (e_value=2e-128) | Symbols: | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr3:2580603-2582043 REVERSE LENGTH=323;; (*ITAG) Solyc01g087030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73707290-73715081 transcript_region:SL2.40ch01:73707290..73715081- go_terms:GO:0005515,GO:0003682 functional_description:"Makorin RING finger protein (AHRD V1 ***- Q7X7W8_PEA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005515,GO:0003682 NbS00044396g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|359483003|ref|XP_003632877.1| (e_value=2e-25) PREDICTED: uncharacterized protein LOC100853427 [Vitis vinifera];; (*ITAG) Solyc03g123550.1.1 (e_value=6e-53) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:64421594-64421938 transcript_region:SL2.40ch03:64421594..64421938- go_terms:GO:0005516 functional_description:"Auxin-responsive family protein (AHRD V1 *--- D7KNW5_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00052200g0005.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|251; (*GB) gi|85068684|gb|ABC69422.1| (e_value=3e-132) CYP72A58 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=3e-92) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14680.1 (e_value=2e-97) | Symbols: CYP72A14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | chr3:4934478-4936462 FORWARD LENGTH=512;; (*ITAG) Solyc07g055350.2.1 (e_value=4e-122) genomic_reference:SL2.40ch07 gene_region:60736172-60738580 transcript_region:SL2.40ch07:60736172..60738580- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00052200g0004.1 protein AED:0.31 eAED:0.34 QI:41|0.25|0|1|0|0|5|0|225; (*GB) gi|85068684|gb|ABC69422.1| (e_value=6e-90) CYP72A58 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=4e-44) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=1e-51) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g062500.2.1 (e_value=4e-83) genomic_reference:SL2.40ch07 gene_region:62434832-62439287 transcript_region:SL2.40ch07:62434832..62439287+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010736g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|8|0|549; (*GB) gi|255559959|ref|XP_002520998.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G06750.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2073882-2076350 FORWARD LENGTH=519;; (*ITAG) Solyc06g031670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:17255317-17259513 transcript_region:SL2.40ch06:17255317..17259513+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00010736g0008.1 protein AED:0.32 eAED:0.32 QI:76|0.88|0.9|1|0.88|0.8|10|438|314; (*GB) gi|225430293|ref|XP_002282677.1| (e_value=3e-118) PREDICTED: putative L-ascorbate peroxidase 6 [Vitis vinifera];; (*SWP) sp|Q8GY91|APX6_ARATH (e_value=2e-106) Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1;; (*TAIR) AT4G32320.1 (e_value=2e-107) | Symbols: APX6 | ascorbate peroxidase 6 | chr4:15602777-15605234 FORWARD LENGTH=329;; (*ITAG) Solyc08g059760.2.1 (e_value=6e-164) genomic_reference:SL2.40ch08 gene_region:42440077-42446002 transcript_region:SL2.40ch08:42440077..42446002- go_terms:GO:0004130,GO:0005247 functional_description:"Peroxidase 40 (AHRD V1 **** PER40_ARATH); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0004130,GO:0005247 NbS00025362g0004.1 protein AED:0.13 eAED:0.13 QI:191|1|1|1|1|1|11|309|706; (*GB) gi|359475077|ref|XP_002275411.2| (e_value=0.0) PREDICTED: tRNA-dihydrouridine synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9T0J6|DUS3L_ARATH (e_value=0.0) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=2;; (*TAIR) AT4G38890.1 (e_value=0.0) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr4:18135909-18139100 REVERSE LENGTH=691;; (*ITAG) Solyc01g110490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88946070-88950914 transcript_region:SL2.40ch01:88946070..88950914+ go_terms:GO:0008152,GO:0008270,GO:0055114 functional_description:"tRNA-dihydrouridine synthase 3-like (AHRD V1 ***- B5X496_SALSA); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0008152,GO:0008270,GO:0055114 NbS00000651g0003.1 protein AED:0.14 eAED:0.14 QI:27|0.84|0.92|1|0.84|0.92|14|388|844; (*GB) gi|359479833|ref|XP_002267103.2| (e_value=0.0) PREDICTED: spermatogenesis-associated protein 20-like [Vitis vinifera];; (*SWP) sp|Q8TB22|SPT20_HUMAN (e_value=3e-171) Spermatogenesis-associated protein 20 OS=Homo sapiens GN=SPATA20 PE=2 SV=3;; (*TAIR) AT4G03200.1 (e_value=0.0) | Symbols: | catalytics | chr4:1408296-1412566 FORWARD LENGTH=818;; (*ITAG) Solyc09g074660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61972098-61978299 transcript_region:SL2.40ch09:61972098..61978299+ go_terms:GO:0005515 functional_description:"Thymidylate kinase (AHRD V1 **-- B1BAE6_CLOBO); contains Interpro domain(s) IPR004879 Protein of unknown function DUF255 "; GO:0005515 NbC24247068g0001.1 protein AED:0.07 eAED:0.07 QI:43|1|0|1|0|0|2|0|45; (*ITAG) Solyc02g083460.2.1 (e_value=1e-20) genomic_reference:SL2.40ch02 gene_region:41436441-41440462 transcript_region:SL2.40ch02:41436441..41440462+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LAA8_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00007320g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|0|0.5|2|36|193; (*GB) gi|359472942|ref|XP_002279484.2| (e_value=1e-27) PREDICTED: uncharacterized protein LOC100244117 [Vitis vinifera];; (*TAIR) AT1G68340.1 (e_value=5e-12) | Symbols: | Protein of unknown function (DUF1639) | chr1:25614440-25615335 REVERSE LENGTH=246;; (*ITAG) Solyc04g007340.2.1 (e_value=2e-47) genomic_reference:SL2.40ch04 gene_region:1050565-1052018 transcript_region:SL2.40ch04:1050565..1052018- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00030701g0003.1 protein AED:0.10 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|252|338; (*GB) gi|365222868|gb|AEW69786.1| (e_value=4e-179) Hop-interacting protein THI143 [Solanum lycopersicum];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=1e-41) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT4G10630.1 (e_value=3e-91) | Symbols: | Glutaredoxin family protein | chr4:6566625-6567629 REVERSE LENGTH=334;; (*ITAG) Solyc08g083270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62941814-62942797 transcript_region:SL2.40ch08:62941814..62942797+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LYR1_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00030701g0009.1 protein AED:0.25 eAED:0.25 QI:410|0.90|0.91|1|0.81|0.83|12|157|602; (*GB) gi|357477093|ref|XP_003608832.1| (e_value=0.0) Nucleotide pyrophosphatase/phosphodiesterase [Medicago truncatula];; (*SWP) sp|Q5MAU8|PPA27_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1;; (*TAIR) AT5G50400.1 (e_value=0.0) | Symbols: ATPAP27, PAP27 | purple acid phosphatase 27 | chr5:20523575-20526231 REVERSE LENGTH=611;; (*ITAG) Solyc08g083250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62929315-62934754 transcript_region:SL2.40ch08:62929315..62934754+ go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00030701g0011.1 protein AED:0.33 eAED:0.34 QI:11|0.85|0.75|1|0.85|0.75|8|502|461; (*GB) gi|225456315|ref|XP_002283742.1| (e_value=0.0) PREDICTED: snurportin-1 [Vitis vinifera];; (*SWP) sp|Q5ZI43|SPN1_CHICK (e_value=2e-49) Snurportin-1 OS=Gallus gallus GN=SNUPN PE=2 SV=1;; (*TAIR) AT4G24880.1 (e_value=0.0) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12808593-12811218 FORWARD LENGTH=417;; (*ITAG) Solyc08g083260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62935402-62939826 transcript_region:SL2.40ch08:62935402..62939826- functional_description:"Snurportin-like protein (AHRD V1 ***- D0NX00_PHYIN)"; NbS00033981g0001.1 protein AED:0.17 eAED:1.00 QI:68|0|0|1|0|0|2|295|16 NbS00002178g0005.1 protein AED:0.12 eAED:0.13 QI:95|0.6|0.33|1|0.6|0.5|6|0|561; (*GB) gi|147797703|emb|CAN72077.1| (e_value=0.0) hypothetical protein VITISV_020314 [Vitis vinifera];; (*SWP) sp|Q94CD8|E134_ARATH (e_value=1e-177) Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1;; (*TAIR) AT3G13560.2 (e_value=1e-178) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:4425484-4427284 REVERSE LENGTH=505;; (*ITAG) Solyc04g007910.2.1 (e_value=4e-139) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00021887g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|134; (*GB) gi|14423867|sp|Q9ST99.1|PROF2_TOBAC (e_value=5e-69) RecName: Full=Profilin-2;; (*SWP) sp|Q9ST99|PROF2_TOBAC (e_value=1e-70) Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1;; (*TAIR) AT4G29340.1 (e_value=6e-59) | Symbols: PRF4 | profilin 4 | chr4:14447718-14448467 FORWARD LENGTH=134;; (*ITAG) Solyc12g044630.1.1 (e_value=8e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45135507-45136150 transcript_region:SL2.40ch12:45135507..45136150+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q9SMC0_TOBAC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00009241g0011.1 protein AED:0.34 eAED:0.41 QI:0|0|0.25|1|1|1|4|151|370; (*GB) gi|359485725|ref|XP_003633323.1| (e_value=4e-102) PREDICTED: uncharacterized protein C167.05-like isoform 4 [Vitis vinifera];; (*TAIR) AT1G11360.4 (e_value=2e-94) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc02g079410.2.1 (e_value=3e-128) genomic_reference:SL2.40ch02 gene_region:38558035-38560976 transcript_region:SL2.40ch02:38558035..38560976+ go_terms:GO:0006950,GO:0005737 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950,GO:0005737 NbS00009241g0005.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|580; (*GB) gi|356515398|ref|XP_003526387.1| (e_value=4e-170) PREDICTED: reticuline oxidase-like protein-like [Glycine max];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-123) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=2e-157) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g079480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38595211-38596896 transcript_region:SL2.40ch02:38595211..38596896- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00009241g0004.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|359483728|ref|XP_002267029.2| (e_value=2e-142) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-91) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=6e-144) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g079470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38593057-38594676 transcript_region:SL2.40ch02:38593057..38594676- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMI1_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00009241g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|14194127|gb|AAK56258.1|AF367269_1 (e_value=1e-150) AT4g20860/T13K14_20 [Arabidopsis thaliana];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=5e-97) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=3e-153) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g079440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38580436-38582052 transcript_region:SL2.40ch02:38580436..38582052- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00009241g0006.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|179; (*GB) gi|255567473|ref|XP_002524716.1| (e_value=7e-35) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G54470.1 (e_value=9e-35) | Symbols: | B-box type zinc finger family protein | chr5:22114584-22115315 REVERSE LENGTH=215;; (*ITAG) Solyc02g079430.2.1 (e_value=1e-52) genomic_reference:SL2.40ch02 gene_region:38574418-38575502 transcript_region:SL2.40ch02:38574418..38575502- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00055576g0007.1 protein AED:0.47 eAED:0.47 QI:0|0|0.33|1|1|1|3|0|126; (*GB) gi|388494856|gb|AFK35494.1| (e_value=3e-54) unknown [Lotus japonicus];; (*TAIR) AT1G34350.1 (e_value=3e-53) | Symbols: | unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr1:12534585-12535927 FORWARD LENGTH=163;; (*ITAG) Solyc08g067830.2.1 (e_value=6e-74) genomic_reference:SL2.40ch08 gene_region:54073334-54077515 transcript_region:SL2.40ch08:54073334..54077515- functional_description:"Transmembrane protein 18 (AHRD V1 ***- B6TMF2_MAIZE)"; NbS00055576g0008.1 protein AED:0.21 eAED:0.21 QI:128|1|0.88|1|1|1|9|0|251; (*GB) gi|225430097|ref|XP_002284586.1| (e_value=2e-104) PREDICTED: psbP domain-containing protein 5, chloroplastic [Vitis vinifera];; (*SWP) sp|P82715|PPD5_ARATH (e_value=2e-87) PsbP domain-containing protein 5, chloroplastic OS=Arabidopsis thaliana GN=PPD5 PE=1 SV=3;; (*TAIR) AT5G11450.1 (e_value=1e-88) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr5:3654475-3656357 FORWARD LENGTH=297;; (*ITAG) Solyc08g067840.2.1 (e_value=4e-129) genomic_reference:SL2.40ch08 gene_region:54082270-54090382 transcript_region:SL2.40ch08:54082270..54090382+ go_terms:GO:0019898 functional_description:"PsbP domain-containing protein 5, chloroplastic (AHRD V1 **-- PPD5_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00055576g0009.1 protein AED:0.42 eAED:0.42 QI:470|0.88|0.9|0.9|0.55|0.6|10|0|248; (*GB) gi|225425581|ref|XP_002263764.1| (e_value=6e-94) PREDICTED: UPF0712 protein C7orf64 homolog [Vitis vinifera];; (*SWP) sp|A4FVJ7|RBM48_DANRE (e_value=2e-27) RNA-binding protein 48 OS=Danio rerio GN=rbm48 PE=2 SV=1;; (*TAIR) AT2G27790.2 (e_value=8e-82) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:11847335-11849285 REVERSE LENGTH=240;; (*ITAG) Solyc08g067820.2.1 (e_value=2e-129) genomic_reference:SL2.40ch08 gene_region:54067860-54072142 transcript_region:SL2.40ch08:54067860..54072142+ go_terms:GO:0003676,GO:0000166 functional_description:"UPF0712 protein C7orf64 homolog (AHRD V1 *--- CG064_DANRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00000025g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|0|0.33|3|0|79; (*ITAG) Solyc03g044840.1.1 (e_value=4e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00000025g0003.1 protein AED:0.08 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|150; (*ITAG) Solyc11g012500.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5326716-5327739 transcript_region:SL2.40ch11:5326716..5327739- functional_description:"Unknown Protein (AHRD V1)"; NbS00033351g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|255551723|ref|XP_002516907.1| (e_value=8e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=3e-47) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G10625.1 (e_value=2e-45) | Symbols: | BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:3358934-3359272 FORWARD LENGTH=112;; (*ITAG) Solyc01g066970.2.1 (e_value=3e-71) genomic_reference:SL2.40ch01 gene_region:67676728-67677333 transcript_region:SL2.40ch01:67676728..67677333- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00033351g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|40949983|gb|AAR97604.1| (e_value=1e-65) flowering promoting factor-like 1 [Nicotiana tabacum];; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=4e-44) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=3e-41) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066980.2.1 (e_value=1e-61) genomic_reference:SL2.40ch01 gene_region:67684096-67684727 transcript_region:SL2.40ch01:67684096..67684727- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00014152g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|0.5|0.66|3|0|325; (*GB) gi|328879894|gb|AEB54605.1| (e_value=2e-89) BLIND [Capsicum annuum];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=9e-74) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=4e-79) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc06g074910.2.1 (e_value=5e-94) genomic_reference:SL2.40ch06 gene_region:42804036-42806196 transcript_region:SL2.40ch06:42804036..42806196+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00014152g0001.1 protein AED:0.36 eAED:0.36 QI:0|1|1|1|0.85|0.75|8|267|185; (*GB) gi|350535370|ref|NP_001234447.1| (e_value=2e-123) lactoylglutathione lyase [Solanum lycopersicum];; (*SWP) sp|Q42891|LGUL_SOLLC (e_value=4e-125) Lactoylglutathione lyase OS=Solanum lycopersicum GN=GLX1 PE=2 SV=1;; (*TAIR) AT1G08110.3 (e_value=2e-103) | Symbols: | lactoylglutathione lyase family protein / glyoxalase I family protein | chr1:2535702-2537630 FORWARD LENGTH=185;; (*ITAG) Solyc11g069040.2.1 (e_value=3e-126) genomic_reference:SL2.40ch11 gene_region:50695058-50703526 transcript_region:SL2.40ch11:50695058..50703526- go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase (AHRD V1 **** B5XCC9_SALSA); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0004462 NbC23908292g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|46389755|dbj|BAD15108.1| (e_value=3e-43) ALG2-interacting protein X [Nicotiana tabacum];; (*TAIR) AT1G15130.1 (e_value=1e-44) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:5206217-5209848 REVERSE LENGTH=846;; (*ITAG) Solyc04g007560.2.1 (e_value=4e-46) genomic_reference:SL2.40ch04 gene_region:1242130-1252566 transcript_region:SL2.40ch04:1242130..1252566+ functional_description:"pH-response regulator protein palA/RIM20 (AHRD V1 **-- C8V8Z2_EMENI); contains Interpro domain(s) IPR004328 BRO1 "; NbS00012460g0006.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|613; (*GB) gi|359480061|ref|XP_002269766.2| (e_value=0.0) PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera];; (*SWP) sp|O64495|SDD1_ARATH (e_value=0.0) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=0.0) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc09g064490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57369054-57371528 transcript_region:SL2.40ch09:57369054..57371528+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6U0R8_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00012460g0019.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|1|1|2|0|393; (*GB) gi|359480321|ref|XP_003632432.1| (e_value=0.0) PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Vitis vinifera];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=0.0) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT2G20370.1 (e_value=0.0) | Symbols: KAM1, MUR3 | Exostosin family protein | chr2:8792355-8794214 FORWARD LENGTH=619;; (*ITAG) Solyc03g115750.1.1 (e_value=3e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59422877-59424604 transcript_region:SL2.40ch03:59422877..59424604+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00012460g0035.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.71|1|0.83|0.85|7|128|539; (*GB) gi|118486577|gb|ABK95127.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT5G32470.1 (e_value=1e-172) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc09g064510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57382052-57386217 transcript_region:SL2.40ch09:57382052..57386217+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- Q117V2_TRIEI); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00012460g0010.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|1|1|2|0|180; (*GB) gi|255590183|ref|XP_002535195.1| (e_value=7e-96) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9M0G7|PXL2_ARATH (e_value=4e-91) Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1;; (*TAIR) AT4G28650.1 (e_value=3e-92) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr4:14144155-14147276 REVERSE LENGTH=1013;; (*ITAG) Solyc09g064520.2.1 (e_value=1e-107) genomic_reference:SL2.40ch09 gene_region:57401662-57405016 transcript_region:SL2.40ch09:57401662..57405016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012460g0033.1 protein AED:0.42 eAED:0.43 QI:0|0.9|0.81|1|0.9|1|11|0|315; (*GB) gi|225437963|ref|XP_002271401.1| (e_value=5e-180) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SK66|NDUA9_ARATH (e_value=2e-152) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2 SV=2;; (*TAIR) AT2G20360.1 (e_value=2e-153) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402;; (*ITAG) Solyc09g064450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57326433-57337506 transcript_region:SL2.40ch09:57326433..57337506+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (Ubiquinone) (AHRD V1 **** D7FUY2_ECTSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005515,GO:0008137 NbS00012460g0002.1 protein AED:0.41 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|224065537|ref|XP_002301846.1| (e_value=5e-26) glycosyltransferase, CAZy family GT47 [Populus trichocarpa];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=4e-18) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT2G20370.1 (e_value=3e-19) | Symbols: KAM1, MUR3 | Exostosin family protein | chr2:8792355-8794214 FORWARD LENGTH=619;; (*ITAG) Solyc09g064470.2.1 (e_value=9e-35) genomic_reference:SL2.40ch09 gene_region:57355329-57357925 transcript_region:SL2.40ch09:57355329..57357925+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 *--- D8SQH4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00012460g0034.1 protein AED:0.53 eAED:0.54 QI:0|0.25|0.2|0.8|0.25|0.4|5|0|219; (*GB) gi|242063496|ref|XP_002453037.1| (e_value=3e-34) hypothetical protein SORBIDRAFT_04g037200 [Sorghum bicolor];; (*SWP) sp|Q9SK66|NDUA9_ARATH (e_value=2e-35) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2 SV=2;; (*TAIR) AT2G20360.1 (e_value=2e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402;; (*ITAG) Solyc09g064450.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:57326433-57337506 transcript_region:SL2.40ch09:57326433..57337506+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (Ubiquinone) (AHRD V1 **** D7FUY2_ECTSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005515,GO:0008137 NbS00012460g0007.1 protein AED:0.09 eAED:0.09 QI:236|0|0.66|1|0|0.33|3|1724|115; (*GB) gi|356537186|ref|XP_003537110.1| (e_value=3e-72) PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Glycine max];; (*SWP) sp|Q0JG75|PSB28_ORYSJ (e_value=1e-69) Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2;; (*TAIR) AT4G28660.1 (e_value=6e-68) | Symbols: PSB28 | photosystem II reaction center PSB28 protein | chr4:14150008-14150933 FORWARD LENGTH=183;; (*ITAG) Solyc09g064500.2.1 (e_value=1e-80) genomic_reference:SL2.40ch09 gene_region:57371665-57373328 transcript_region:SL2.40ch09:57371665..57373328- go_terms:GO:0016020 functional_description:"Photosystem II reaction center psb28 protein (AHRD V1 ***- C6SZM2_SOYBN); contains Interpro domain(s) IPR005610 Photosystem II protein Psb28, class 1 "; GO:0016020 NbS00012460g0040.1 protein AED:0.14 eAED:0.14 QI:111|1|1|1|0.5|0.6|5|762|185; (*GB) gi|365818533|gb|AEX00355.1| (e_value=7e-21) IAA12 [Solanum lycopersicum];; (*ITAG) Solyc09g064530.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:57405511-57410723 transcript_region:SL2.40ch09:57405511..57410723- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00012460g0036.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|3|0|894; (*GB) gi|255590183|ref|XP_002535195.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9M0G7|PXL2_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1;; (*TAIR) AT4G28650.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr4:14144155-14147276 REVERSE LENGTH=1013;; (*ITAG) Solyc09g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57401662-57405016 transcript_region:SL2.40ch09:57401662..57405016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00022232g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|538; (*GB) gi|302399085|gb|ADL36837.1| (e_value=0.0) TCP domain class transcription factor [Malus x domestica];; (*SWP) sp|Q2T9X2|TCPD_BOVIN (e_value=0.0) T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=1 SV=3;; (*TAIR) AT3G18190.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:6232226-6233836 FORWARD LENGTH=536;; (*ITAG) Solyc03g118910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61737005-61738624 transcript_region:SL2.40ch03:61737005..61738624- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit delta (AHRD V1 ***- B9S339_RICCO); contains Interpro domain(s) IPR012717 T-complex protein 1, delta subunit "; GO:0044267,GO:0006457 NbS00022232g0011.1 protein AED:0.13 eAED:0.16 QI:0|0.8|0.5|1|1|1|6|0|367; (*GB) gi|225456049|ref|XP_002277607.1| (e_value=2e-139) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-109) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G18200.1 (e_value=1e-125) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:6234509-6236059 REVERSE LENGTH=360;; (*ITAG) Solyc03g118900.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61732832-61734868 transcript_region:SL2.40ch03:61732832..61734868+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9LV20_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00022232g0004.1 protein AED:0.34 eAED:0.35 QI:0|0.88|0.7|1|1|1|10|262|344; (*GB) gi|225456039|ref|XP_002277457.1| (e_value=1e-172) PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera];; (*SWP) sp|Q9LMT1|P2C08_ARATH (e_value=3e-152) Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2;; (*TAIR) AT1G18030.1 (e_value=2e-153) | Symbols: | Protein phosphatase 2C family protein | chr1:6204400-6206678 FORWARD LENGTH=351;; (*ITAG) Solyc03g118890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61726693-61731590 transcript_region:SL2.40ch03:61726693..61731590+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00023949g0011.1 protein AED:0.14 eAED:0.14 QI:231|0.86|0.83|1|0.69|0.70|24|606|1294; (*GB) gi|359488765|ref|XP_002281791.2| (e_value=0.0) PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera];; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=0.0) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g067570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32299931-32312247 transcript_region:SL2.40ch02:32299931..32312247+ go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00023949g0010.1 protein AED:0.15 eAED:0.15 QI:185|1|1|1|1|1|3|129|92; (*GB) gi|225457158|ref|XP_002283743.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100263922 [Vitis vinifera];; (*TAIR) AT3G48140.1 (e_value=6e-45) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc02g087330.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:44343132-44345022 transcript_region:SL2.40ch02:44343132..44345022- functional_description:"B12D-like protein (AHRD V1 ***- D2XQY6_WOLAR); contains Interpro domain(s) IPR010530 B12D "; NbS00023949g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|3|0|225; (*GB) gi|83283979|gb|ABC01897.1| (e_value=1e-89) protein transport SEC13-like protein [Solanum tuberosum];; (*SWP) sp|Q3ZCC9|SEC13_BOVIN (e_value=4e-49) Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1;; (*TAIR) AT2G30050.1 (e_value=2e-83) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc02g087300.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44325520-44326428 transcript_region:SL2.40ch02:44325520..44326428+ go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00023044g0004.1 protein AED:0.12 eAED:0.12 QI:289|1|1|1|0|0.5|2|113|84 NbS00006679g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|147792209|emb|CAN72978.1| (e_value=2e-59) hypothetical protein VITISV_009029 [Vitis vinifera];; (*SWP) sp|P26861|RM06_MARPO (e_value=1e-47) 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2;; (*TAIR) AT2G18400.1 (e_value=7e-57) | Symbols: | ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102;; (*ITAG) Solyc02g085280.1.1 (e_value=2e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42805687-42805995 transcript_region:SL2.40ch02:42805687..42805995- go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- A6NXE5_9BACE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00016919g0005.1 protein AED:0.36 eAED:0.37 QI:71|1|0.8|1|0.5|0.8|5|0|268; (*GB) gi|118486162|gb|ABK94924.1| (e_value=4e-68) unknown [Populus trichocarpa];; (*TAIR) AT3G12685.1 (e_value=1e-60) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:4029245-4030261 REVERSE LENGTH=213;; (*ITAG) Solyc01g005910.2.1 (e_value=2e-144) genomic_reference:SL2.40ch01 gene_region:595042-598983 transcript_region:SL2.40ch01:595042..598983+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 *--- B2A528_NATTJ); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00016919g0004.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|2|0|158; (*GB) gi|255580068|ref|XP_002530867.1| (e_value=2e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55230.1 (e_value=8e-47) | Symbols: | Family of unknown function (DUF716) | chr1:20602895-20603797 FORWARD LENGTH=300;; (*ITAG) Solyc01g006050.2.1 (e_value=1e-63) genomic_reference:SL2.40ch01 gene_region:729095-730484 transcript_region:SL2.40ch01:729095..730484- functional_description:"Plant viral-response family protein (AHRD V1 **-- B6SQA7_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00016919g0101.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|474 NbS00016919g0102.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|360 NbS00032044g0014.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0|0|3|590|463; (*GB) gi|359490387|ref|XP_002274057.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245174 [Vitis vinifera];; (*TAIR) AT4G33495.1 (e_value=0.0) | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:16111349-16112578 REVERSE LENGTH=409;; (*ITAG) Solyc06g063270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36359545-36361515 transcript_region:SL2.40ch06:36359545..36361515- go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00032044g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|460; (*GB) gi|241897455|gb|ACS70946.1| (e_value=0.0) feruloyl transferase [Solanum tuberosum];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=0.0) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT5G41040.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:16431448-16433086 FORWARD LENGTH=457;; (*ITAG) Solyc03g097500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53285695-53287618 transcript_region:SL2.40ch03:53285695..53287618+ go_terms:GO:0050734,GO:0010327 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IFG0_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050734,GO:0010327 NbS00032044g0013.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.6|1|0.66|0.8|10|0|501; (*GB) gi|359491564|ref|XP_002280398.2| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100245819 [Vitis vinifera];; (*TAIR) AT3G48710.1 (e_value=5e-26) | Symbols: | DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462;; (*ITAG) Solyc03g097490.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:53272611-53278255 transcript_region:SL2.40ch03:53272611..53278255+ functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00035985g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|332322087|emb|CCA65979.1| (e_value=1e-16) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT4G04650.1 (e_value=9e-15) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr4:2353989-2355213 REVERSE LENGTH=332;; (*ITAG) Solyc00g304030.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00041418g0005.1 protein AED:0.09 eAED:0.12 QI:0|0.83|0.76|1|0.66|0.76|13|0|699; (*GB) gi|225446993|ref|XP_002268518.1| (e_value=0.0) PREDICTED: fimbrin-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G35700.1 (e_value=0.0) | Symbols: FIM2, FIM5 | fimbrin-like protein 2 | chr5:13872833-13876432 REVERSE LENGTH=687;; (*ITAG) Solyc07g049600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57259712-57265543 transcript_region:SL2.40ch07:57259712..57265543- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00005189g0005.1 protein AED:0.00 eAED:0.00 QI:59|1|1|1|1|1|4|707|372; (*GB) gi|356540902|ref|XP_003538923.1| (e_value=2e-157) PREDICTED: jmjC domain-containing protein 7-like [Glycine max];; (*SWP) sp|P0C870|JMJD7_HUMAN (e_value=3e-66) JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=2 SV=1;; (*TAIR) AT3G45880.1 (e_value=3e-147) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:16869855-16871544 REVERSE LENGTH=345;; (*ITAG) Solyc08g075510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56827447-56831008 transcript_region:SL2.40ch08:56827447..56831008- functional_description:"JmjC domain protein (AHRD V1 **-- Q1D441_MYXXD); contains Interpro domain(s) IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase "; NbS00025799g0007.1 protein AED:0.34 eAED:0.39 QI:0|0.66|0.42|1|0.66|0.85|7|0|546; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.2 (e_value=6e-128) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbC25766560g0001.1 protein AED:0.36 eAED:0.84 QI:21|0|0|1|0|0|3|0|83 NbS00061177g0003.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.33|1|0.5|0.66|3|0|180; (*GB) gi|156915045|gb|ABU97107.1| (e_value=1e-83) MYB305 protein v1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=6e-79) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT3G27810.1 (e_value=3e-65) | Symbols: ATMYB21, ATMYB3, MYB21 | myb domain protein 21 | chr3:10307596-10310093 FORWARD LENGTH=226;; (*ITAG) Solyc02g067760.2.1 (e_value=6e-85) genomic_reference:SL2.40ch02 gene_region:32454233-32457848 transcript_region:SL2.40ch02:32454233..32457848- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B8YIB6_MIRJA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002285g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|234; (*GB) gi|225465343|ref|XP_002271872.1| (e_value=5e-62) PREDICTED: transcription factor ORG2 [Vitis vinifera];; (*SWP) sp|Q9M1K1|ORG2_ARATH (e_value=2e-44) Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1;; (*TAIR) AT3G56970.1 (e_value=1e-45) | Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253;; (*ITAG) Solyc10g079650.1.1 (e_value=3e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60476797-60478836 transcript_region:SL2.40ch10:60476797..60478836+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00002285g0006.1 protein AED:0.42 eAED:0.42 QI:0|1|1|1|0|0.5|2|0|108; (*GB) gi|388515895|gb|AFK46009.1| (e_value=3e-35) unknown [Lotus japonicus];; (*TAIR) AT4G14145.1 (e_value=2e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8152499-8153091 REVERSE LENGTH=134;; (*ITAG) Solyc03g007490.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:2070713-2072278 transcript_region:SL2.40ch03:2070713..2072278+ functional_description:"Kinesin like protein (AHRD V1 ***- O23274_ARATH)"; NbS00045285g0003.1 protein AED:0.35 eAED:0.35 QI:198|1|1|1|1|1|10|326|352; (*GB) gi|225438676|ref|XP_002282060.1| (e_value=0.0) PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FV50|AMP1D_ARATH (e_value=0.0) Methionine aminopeptidase 1D, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MAP1D PE=2 SV=1;; (*TAIR) AT4G37040.1 (e_value=0.0) | Symbols: MAP1D | methionine aminopeptidase 1D | chr4:17455175-17457085 FORWARD LENGTH=350;; (*ITAG) Solyc02g090670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46778563-46785775 transcript_region:SL2.40ch02:46778563..46785775- go_terms:GO:0070006 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9H6F3_POPTR); contains Interpro domain(s) IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 "; GO:0070006 NbS00009805g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.4|1|0.5|0.4|5|0|382; (*GB) gi|118624208|emb|CAJ46040.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LFM5|YUC4_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA4 OS=Arabidopsis thaliana GN=YUC4 PE=2 SV=1;; (*TAIR) AT5G11320.1 (e_value=0.0) | Symbols: YUC4 | Flavin-binding monooxygenase family protein | chr5:3611429-3613361 REVERSE LENGTH=411;; (*ITAG) Solyc06g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37403377-37405689 transcript_region:SL2.40ch06:37403377..37405689+ go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00013093g0008.1 protein AED:0.12 eAED:0.16 QI:0|1|0|1|0|0|2|0|382; (*GB) gi|225424663|ref|XP_002285541.1| (e_value=0.0) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*SWP) sp|Q02527|MGAT3_RAT (e_value=1e-13) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT1G12990.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392;; (*ITAG) Solyc05g013580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6883577-6886664 transcript_region:SL2.40ch05:6883577..6886664+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7KPE7_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00013093g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|240; (*ITAG) Solyc04g025040.1.1 (e_value=7e-54) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:17399321-17400034 transcript_region:SL2.40ch04:17399321..17400034+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013093g0122.1 protein AED:0.17 eAED:0.17 QI:16|0.87|0.88|0.88|0.75|1|9|0|422 NbS00013093g0106.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|107 NbS00013093g0105.1 protein AED:0.44 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|618 NbS00013093g0121.1 protein AED:0.18 eAED:0.19 QI:361|0.85|0.62|1|0.85|0.75|8|0|437 NbS00013093g0111.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.25|1|1|4|0|113 NbC23960614g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|37 NbS00012468g0004.1 protein AED:0.36 eAED:0.40 QI:0|0|0|0.75|1|1|4|0|224; (*GB) gi|224132078|ref|XP_002321250.1| (e_value=2e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=2e-83) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=3e-131) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=1e-148) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00012468g0002.1 protein AED:0.59 eAED:0.59 QI:6|0|0.33|0.66|1|1|3|0|70 NbS00003275g0023.1 protein AED:0.01 eAED:0.01 QI:99|1|1|1|1|1|4|400|391; (*GB) gi|225436823|ref|XP_002270566.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252743 [Vitis vinifera];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=1e-20) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT4G03100.1 (e_value=6e-179) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr4:1374361-1375913 FORWARD LENGTH=430;; (*ITAG) Solyc09g074340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61638622-61643762 transcript_region:SL2.40ch09:61638622..61643762+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00003275g0026.1 protein AED:0.37 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|60; (*SWP) sp|Q8LLP5|H2AXA_ORYSJ (e_value=2e-17) Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1;; (*TAIR) AT1G08880.1 (e_value=1e-17) | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone superfamily protein | chr1:2847144-2847676 REVERSE LENGTH=142;; (*ITAG) Solyc09g082710.2.1 (e_value=3e-18) genomic_reference:SL2.40ch09 gene_region:63814378-63815336 transcript_region:SL2.40ch09:63814378..63815336- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- B9MZP0_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00003275g0028.1 protein AED:0.19 eAED:0.23 QI:0|0|0.33|1|0.5|0.66|3|0|402; (*GB) gi|225436827|ref|XP_002270748.1| (e_value=0.0) PREDICTED: NPL4-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9LYC2|NPL41_ARATH (e_value=0.0) NPL4-like protein 1 OS=Arabidopsis thaliana GN=At3g63000 PE=1 SV=1;; (*TAIR) AT3G63000.1 (e_value=0.0) | Symbols: NPL41 | NPL4-like protein 1 | chr3:23283836-23285357 FORWARD LENGTH=413;; (*ITAG) Solyc06g084440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45835298-45839256 transcript_region:SL2.40ch06:45835298..45839256- functional_description:"Nuclear protein localization 4 (AHRD V1 ***- D3B583_POLPA); contains Interpro domain(s) IPR007717 NPL4 "; NbS00003275g0029.1 protein AED:0.37 eAED:0.38 QI:118|0.88|0.8|1|0.88|1|10|44|450; (*GB) gi|225436819|ref|XP_002270390.1| (e_value=0.0) PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis vinifera];; (*SWP) sp|O04425|FCA_ARATH (e_value=3e-44) Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2;; (*TAIR) AT4G03110.1 (e_value=2e-167) | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441;; (*ITAG) Solyc09g074360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61655003-61662278 transcript_region:SL2.40ch09:61655003..61662278- go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"RNA binding protein (AHRD V1 **-- B6UFA0_MAIZE); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003676,GO:0003723,GO:0000166 NbS00015244g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|197; (*GB) gi|225454276|ref|XP_002275895.1| (e_value=6e-50) PREDICTED: uncharacterized protein LOC100256823 [Vitis vinifera];; (*TAIR) AT2G46000.1 (e_value=1e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208;; (*ITAG) Solyc01g094780.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:77949879-77952501 transcript_region:SL2.40ch01:77949879..77952501- functional_description:"Unknown Protein (AHRD V1)"; NbS00006105g0005.1 protein AED:0.26 eAED:0.32 QI:20|0|0|1|0.33|0.25|4|0|321; (*GB) gi|359806747|ref|NP_001241554.1| (e_value=3e-132) uncharacterized protein LOC100776175 [Glycine max];; (*SWP) sp|Q86V24|ADR2_HUMAN (e_value=2e-54) Adiponectin receptor protein 2 OS=Homo sapiens GN=ADIPOR2 PE=1 SV=1;; (*TAIR) AT4G37680.2 (e_value=3e-120) | Symbols: HHP4 | heptahelical protein 4 | chr4:17701231-17702568 FORWARD LENGTH=385;; (*ITAG) Solyc02g092230.2.1 (e_value=1e-131) genomic_reference:SL2.40ch02 gene_region:47956191-47959512 transcript_region:SL2.40ch02:47956191..47959512- go_terms:GO:0004872 functional_description:"Adiponectin receptor 2 (AHRD V1 *-** Q5TYU5_DANRE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872 NbS00003480g0008.1 protein AED:0.08 eAED:0.08 QI:149|0.85|0.87|1|1|1|8|56|630; (*GB) gi|296086143|emb|CBI31584.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=9e-155) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G05940.1 (e_value=0.0) | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide exchange factor 5 | chr5:1786028-1788363 FORWARD LENGTH=611;; (*ITAG) Solyc08g006550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1163040-1165586 transcript_region:SL2.40ch08:1163040..1165586+ go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00003480g0009.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.71|0|0.42|7|0|307; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-49) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00001117g0003.1 protein AED:0.36 eAED:0.57 QI:336|0|0.25|1|0|0|4|0|77 NbS00009739g0005.1 protein AED:0.12 eAED:0.15 QI:183|0.78|0.93|1|0.85|0.8|15|362|489; (*GB) gi|359495798|ref|XP_002262872.2| (e_value=0.0) PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P34899|GLYM_PEA (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT5G26780.1 (e_value=0.0) | Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=517;; (*ITAG) Solyc04g076790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59263823-59269610 transcript_region:SL2.40ch04:59263823..59269610+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9SMX7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00040706g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|531; (*GB) gi|255552774|ref|XP_002517430.1| (e_value=3e-180) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|O04567|Y1719_ARATH (e_value=3e-170) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT1G27190.1 (e_value=2e-171) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:9446923-9448728 REVERSE LENGTH=601;; (*ITAG) Solyc05g006570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1207083-1208915 transcript_region:SL2.40ch05:1207083..1208915+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00040706g0009.1 protein AED:0.28 eAED:0.28 QI:190|1|1|1|1|1|3|232|218; (*GB) gi|225424825|ref|XP_002272374.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100248470 [Vitis vinifera];; (*TAIR) AT1G69980.1 (e_value=2e-52) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26356559-26357647 REVERSE LENGTH=205;; (*ITAG) Solyc05g006580.2.1 (e_value=9e-100) genomic_reference:SL2.40ch05 gene_region:1210946-1213877 transcript_region:SL2.40ch05:1210946..1213877+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040706g0007.1 protein AED:0.37 eAED:0.39 QI:352|0.8|0.83|1|0.6|0.83|6|0|321; (*GB) gi|350537893|ref|NP_001233804.1| (e_value=0.0) protein phosphatase 2A catalytic subunit [Solanum lycopersicum];; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1;; (*TAIR) AT1G10430.1 (e_value=0.0) | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00061093g0001.1 protein AED:0.03 eAED:0.14 QI:39|-1|0|1|-1|1|1|0|96; (*GB) gi|225465115|ref|XP_002270650.1| (e_value=3e-27) PREDICTED: LOB domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q9SHE9|LBD4_ARATH (e_value=2e-18) LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1;; (*TAIR) AT1G31320.1 (e_value=2e-19) | Symbols: LBD4 | LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172;; (*ITAG) Solyc02g069440.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:33912638-33915345 transcript_region:SL2.40ch02:33912638..33915345+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00061093g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|130 NbS00061093g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|206; (*GB) gi|30013659|gb|AAP03872.1| (e_value=3e-90) putative photosystem I subunit III precursor [Nicotiana tabacum];; (*SWP) sp|P46486|PSAF_FLATR (e_value=7e-79) Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1;; (*TAIR) AT1G31330.1 (e_value=4e-73) | Symbols: PSAF | photosystem I subunit F | chr1:11215011-11215939 REVERSE LENGTH=221;; (*ITAG) Solyc02g069450.2.1 (e_value=5e-94) genomic_reference:SL2.40ch02 gene_region:33915687-33919252 transcript_region:SL2.40ch02:33915687..33919252- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit III (AHRD V1 ***- Q9XQB4_PHAAU); contains Interpro domain(s) IPR003666 Photosystem I reaction centre protein PsaF, subunit III "; GO:0009538 NbS00009080g0011.1 protein AED:0.12 eAED:0.14 QI:0|1|0|1|0.5|0.33|3|0|758; (*GB) gi|224134539|ref|XP_002327429.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C888|PLDE1_ARATH (e_value=0.0) Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=2 SV=1;; (*TAIR) AT1G55180.1 (e_value=0.0) | Symbols: PLDEPSILON, PLDALPHA4 | phospholipase D alpha 4 | chr1:20585057-20587629 REVERSE LENGTH=762;; (*ITAG) Solyc12g011170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4013435-4018305 transcript_region:SL2.40ch12:4013435..4018305+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00009080g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|351724643|ref|NP_001235529.1| (e_value=5e-82) uncharacterized protein LOC100526887 [Glycine max];; (*SWP) sp|Q9C889|PR1F2_ARATH (e_value=2e-74) PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1;; (*TAIR) AT1G55190.1 (e_value=2e-75) | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acceptor) family protein | chr1:20588450-20589019 FORWARD LENGTH=189;; (*ITAG) Solyc03g121460.1.1 (e_value=2e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63616739-63617287 transcript_region:SL2.40ch03:63616739..63617287- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00009080g0003.1 protein AED:0.36 eAED:0.36 QI:188|1|1|1|0.8|0.66|6|674|278; (*GB) gi|147810266|emb|CAN71449.1| (e_value=4e-140) hypothetical protein VITISV_027853 [Vitis vinifera];; (*TAIR) AT1G55170.1 (e_value=2e-84) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). | chr1:20580578-20581706 FORWARD LENGTH=283;; (*ITAG) Solyc03g121500.2.1 (e_value=4e-158) genomic_reference:SL2.40ch03 gene_region:63633189-63640143 transcript_region:SL2.40ch03:63633189..63640143- functional_description:"Myosin-like protein (AHRD V1 ***- Q9C717_ARATH)"; NbS00009080g0017.1 protein AED:0.38 eAED:0.38 QI:206|0.66|0.42|1|0.83|0.71|7|0|424; (*GB) gi|255560725|ref|XP_002521376.1| (e_value=9e-74) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|P41381|IF4A8_TOBAC (e_value=9e-75) Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.4 (e_value=6e-74) | Symbols: EIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407;; (*ITAG) Solyc06g062800.2.1 (e_value=2e-74) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00009080g0015.1 protein AED:0.32 eAED:0.40 QI:0|0.25|0.6|1|0.25|0.2|5|235|179; (*GB) gi|255546083|ref|XP_002514101.1| (e_value=3e-50) Thioredoxin, putative [Ricinus communis];; (*SWP) sp|Q8LCT3|TRL22_ARATH (e_value=1e-45) Thioredoxin-like 2-2, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2;; (*TAIR) AT4G29670.2 (e_value=8e-47) | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin 2 | chr4:14535983-14537108 REVERSE LENGTH=236;; (*ITAG) Solyc03g121480.2.1 (e_value=1e-65) genomic_reference:SL2.40ch03 gene_region:63624799-63627641 transcript_region:SL2.40ch03:63624799..63627641- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7MCJ1_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00014938g0005.1 protein AED:0.03 eAED:0.03 QI:71|1|1|1|1|1|4|137|331; (*GB) gi|302142449|emb|CBI19652.3| (e_value=3e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=3e-49) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT1G75090.1 (e_value=3e-97) | Symbols: | DNA glycosylase superfamily protein | chr1:28187647-28189612 REVERSE LENGTH=329;; (*ITAG) Solyc04g079990.2.1 (e_value=2e-165) genomic_reference:SL2.40ch04 gene_region:61886823-61890863 transcript_region:SL2.40ch04:61886823..61890863- go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00014938g0006.1 protein AED:0.12 eAED:0.29 QI:0|0|0|1|1|1|3|0|350; (*GB) gi|350536181|ref|NP_001234745.1| (e_value=1e-113) mature anther-specific protein LAT61 [Solanum lycopersicum];; (*SWP) sp|Q8S307|BZR1_ARATH (e_value=7e-83) Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1;; (*TAIR) AT1G75080.2 (e_value=5e-84) | Symbols: BZR1 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:28185709-28187063 FORWARD LENGTH=336;; (*ITAG) Solyc04g079980.2.1 (e_value=2e-140) genomic_reference:SL2.40ch04 gene_region:61883229-61885254 transcript_region:SL2.40ch04:61883229..61885254+ go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00004539g0007.1 protein AED:0.30 eAED:0.30 QI:203|1|0.90|1|1|1|11|0|424; (*GB) gi|147834848|emb|CAN68309.1| (e_value=4e-97) hypothetical protein VITISV_043507 [Vitis vinifera];; (*SWP) sp|Q93YR3|F10AL_ARATH (e_value=3e-84) FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1;; (*TAIR) AT4G22670.1 (e_value=2e-85) | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting protein 1 | chr4:11918236-11920671 FORWARD LENGTH=441;; (*ITAG) Solyc08g079260.2.1 (e_value=2e-112) genomic_reference:SL2.40ch08 gene_region:60032686-60038031 transcript_region:SL2.40ch08:60032686..60038031+ go_terms:GO:0030544 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- Q4RFT2_TETNG); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0030544 NbS00004539g0008.1 protein AED:0.43 eAED:0.52 QI:0|0.33|0.5|0.75|0.66|0.75|4|0|182; (*GB) gi|388502874|gb|AFK39503.1| (e_value=1e-21) unknown [Medicago truncatula];; (*TAIR) AT1G18280.1 (e_value=2e-14) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:6294403-6295207 FORWARD LENGTH=180;; (*ITAG) Solyc08g007460.2.1 (e_value=4e-40) genomic_reference:SL2.40ch08 gene_region:2031768-2034424 transcript_region:SL2.40ch08:2031768..2034424+ go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 -*** B9RGU5_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00060985g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|970; (*GB) gi|15226909|ref|NP_181059.1| (e_value=1e-39) DCD (Development and Cell Death) domain protein [Arabidopsis thaliana];; (*TAIR) AT2G35140.3 (e_value=2e-42) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:14813990-14816808 FORWARD LENGTH=879;; (*ITAG) Solyc02g068780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33274430-33278046 transcript_region:SL2.40ch02:33274430..33278046+ functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00009646g0104.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|133 NbS00009646g0106.1 protein AED:0.38 eAED:0.55 QI:90|0|0|1|0|0|3|0|141 NbS00008901g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|60; (*GB) gi|57014003|ref|YP_173474.1| (e_value=2e-28) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT1G35580.3 (e_value=8e-19) | Symbols: CINV1 | cytosolic invertase 1 | chr1:13123183-13124808 REVERSE LENGTH=460;; (*ITAG) Solyc00g021660.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00008901g0004.1 protein AED:0.22 eAED:0.38 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|57013971|ref|YP_173443.1| (e_value=2e-44) hypothetical protein NitaMp105 [Nicotiana tabacum]; NbS00010291g0006.1 protein AED:0.11 eAED:0.11 QI:217|1|1|1|0.85|0.87|8|399|512; (*GB) gi|255555937|ref|XP_002519004.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G32080.1 (e_value=0.0) | Symbols: | membrane protein, putative | chr1:11537572-11539756 REVERSE LENGTH=512;; (*ITAG) Solyc08g076290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57425191-57429464 transcript_region:SL2.40ch08:57425191..57429464- go_terms:GO:0016020 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007300 LrgB-like protein "; GO:0016020 NbS00010291g0008.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|1|2|0|152; (*GB) gi|85068642|gb|ABC69401.1| (e_value=5e-48) CYP71D49v2 [Nicotiana tabacum];; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=8e-48) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G48300.1 (e_value=5e-24) | Symbols: CYP71A23 | cytochrome P450, family 71, subfamily A, polypeptide 23 | chr3:17885524-17887118 FORWARD LENGTH=483;; (*ITAG) Solyc08g076250.1.1 (e_value=6e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:57418381-57420194 transcript_region:SL2.40ch08:57418381..57420194+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010291g0009.1 protein AED:0.84 eAED:0.88 QI:0|0|0|0.33|0.5|0.66|3|0|97 NbS00012247g0001.1 protein AED:0.16 eAED:0.18 QI:0|1|0.5|1|1|1|4|0|360; (*GB) gi|225464966|ref|XP_002276360.1| (e_value=2e-157) PREDICTED: uncharacterized protein LOC100253478 [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=3e-138) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc06g074330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42343045-42345361 transcript_region:SL2.40ch06:42343045..42345361- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00012247g0003.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|93 NbS00039734g0007.1 protein AED:0.20 eAED:0.20 QI:173|0.83|0.71|1|1|1|7|0|418; (*GB) gi|225445236|ref|XP_002280965.1| (e_value=0.0) PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera];; (*SWP) sp|O22025|CFXQ_CYAME (e_value=4e-39) Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2;; (*TAIR) AT3G24530.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945678-8947786 REVERSE LENGTH=481;; (*ITAG) Solyc12g007100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1537587-1541140 transcript_region:SL2.40ch12:1537587..1541140- go_terms:GO:0030506 functional_description:"Ankyrin repeat domain-containing protein 1 (AHRD V1 *--* ANKR1_CHICK); contains Interpro domain(s) IPR000641 CbxX/CfqX "; GO:0030506 NbS00039734g0006.1 protein AED:0.34 eAED:0.34 QI:0|1|0.8|1|1|0.8|5|0|453; (*GB) gi|225445238|ref|XP_002280972.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249177 [Vitis vinifera];; (*TAIR) AT5G19540.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6595748-6597724 FORWARD LENGTH=462;; (*ITAG) Solyc12g007090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1532751-1536367 transcript_region:SL2.40ch12:1532751..1536367- functional_description:"Os08g0387500 protein (Fragment) (AHRD V1 ***- Q0J5Y7_ORYSJ)"; NbS00034222g0006.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|0.5|2|0|81; (*GB) gi|224114678|ref|XP_002339510.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G65260.1 (e_value=5e-17) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc03g094090.2.1 (e_value=3e-45) genomic_reference:SL2.40ch03 gene_region:49250587-49251515 transcript_region:SL2.40ch03:49250587..49251515- functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY)"; NbS00034222g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.25|0.2|0.8|0.5|0.6|5|15|192; (*GB) gi|255539953|ref|XP_002511041.1| (e_value=3e-53) polyadenylate-binding protein, putative [Ricinus communis];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=2e-20) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G65260.1 (e_value=3e-49) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc03g094080.2.1 (e_value=1e-61) genomic_reference:SL2.40ch03 gene_region:49237600-49251473 transcript_region:SL2.40ch03:49237600..49251473- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00057557g0003.1 protein AED:0.00 eAED:0.00 QI:255|1|1|1|1|1|2|856|545; (*GB) gi|255554334|ref|XP_002518207.1| (e_value=0.0) transporter, putative [Ricinus communis];; (*TAIR) AT1G04570.1 (e_value=5e-154) | Symbols: | Major facilitator superfamily protein | chr1:1246859-1248600 REVERSE LENGTH=542;; (*ITAG) Solyc09g090760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65538656-65545271 transcript_region:SL2.40ch09:65538656..65545271+ functional_description:"Folate/biopterin transporter family protein (AHRD V1 *-*- B6TYM7_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; NbC24542508g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|81; (*GB) gi|350537179|ref|NP_001234283.1| (e_value=9e-20) anti-PCD protein-like precursor [Solanum lycopersicum];; (*ITAG) Solyc12g014580.1.1 (e_value=4e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:5577417-5577847 transcript_region:SL2.40ch12:5577417..5577847- functional_description:"Pollen allergen Ole e 6 (AHRD V1 *-*- ALL6_OLEEU); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00012304g0017.1 protein AED:0.09 eAED:0.09 QI:126|1|1|1|1|1|7|297|242; (*GB) gi|359493638|ref|XP_002282690.2| (e_value=4e-109) PREDICTED: E3 SUMO-protein ligase MMS21-like [Vitis vinifera];; (*SWP) sp|Q8GYH7|NSE2_ARATH (e_value=2e-87) E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1 SV=1;; (*TAIR) AT3G15150.1 (e_value=1e-88) | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superfamily protein | chr3:5102210-5104082 REVERSE LENGTH=249;; (*ITAG) Solyc07g062780.2.1 (e_value=8e-148) genomic_reference:SL2.40ch07 gene_region:62681796-62685236 transcript_region:SL2.40ch07:62681796..62685236- go_terms:GO:0019789 functional_description:"E3 SUMO-protein ligase NSE2 (AHRD V1 **** C3KJP6_ANOFI); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0019789 NbS00012304g0025.1 protein AED:0.20 eAED:0.20 QI:145|0.8|0.83|1|0.4|0.5|6|790|300; (*GB) gi|225461547|ref|XP_002282697.1| (e_value=2e-136) PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Vitis vinifera];; (*SWP) sp|Q8W566|Y3514_ARATH (e_value=7e-120) Uncharacterized exonuclease domain-containing protein At3g15140 OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1;; (*TAIR) AT3G15140.1 (e_value=5e-121) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337;; (*ITAG) Solyc07g062750.2.1 (e_value=9e-178) genomic_reference:SL2.40ch07 gene_region:62667046-62670973 transcript_region:SL2.40ch07:62667046..62670973+ go_terms:GO:0005515 functional_description:"ERI1 exoribonuclease 3 (AHRD V1 **-- ERI3_BOVIN); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0005515 NbS00012304g0019.1 protein AED:0.25 eAED:0.25 QI:0|0.8|0.16|1|0.8|0.83|6|0|1424; (*GB) gi|11994502|dbj|BAB02567.1| (e_value=0.0) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|P40340|TBP7_YEAST (e_value=2e-90) Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTA7 PE=1 SV=2;; (*TAIR) AT3G15120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5088487-5095482 REVERSE LENGTH=1954;; (*ITAG) Solyc07g062760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62673364-62677821 transcript_region:SL2.40ch07:62673364..62677821+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 4 homolog (AHRD V1 *--- PRS4_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00012304g0018.1 protein AED:0.33 eAED:0.34 QI:0|0.4|0.16|1|0.8|0.83|6|349|868; (*GB) gi|225461549|ref|XP_002282706.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243511 [Vitis vinifera];; (*SWP) sp|P40340|TBP7_YEAST (e_value=1e-34) Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTA7 PE=1 SV=2;; (*TAIR) AT3G15120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5088487-5095482 REVERSE LENGTH=1954;; (*ITAG) Solyc07g062770.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62678479-62681440 transcript_region:SL2.40ch07:62678479..62681440+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012304g0005.1 protein AED:0.47 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|302142954|emb|CBI20249.3| (e_value=5e-17) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g062760.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62673364-62677821 transcript_region:SL2.40ch07:62673364..62677821+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 4 homolog (AHRD V1 *--- PRS4_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00015248g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|187; (*GB) gi|225456930|ref|XP_002281358.1| (e_value=2e-74) PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Vitis vinifera];; (*SWP) sp|Q9FML4|LOB_ARATH (e_value=6e-65) Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1;; (*TAIR) AT5G63090.4 (e_value=5e-66) | Symbols: LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH=186;; (*ITAG) Solyc03g112430.1.1 (e_value=1e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56889858-56890448 transcript_region:SL2.40ch03:56889858..56890448- functional_description:"LOB domain protein 1 (AHRD V1 ***- B2KKZ3_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00015248g0009.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.5|1|1|2|0|126 NbS00015248g0015.1 protein AED:0.20 eAED:0.25 QI:0|0.66|0.5|0.9|0.88|0.8|10|0|370; (*GB) gi|225470599|ref|XP_002274463.1| (e_value=0.0) PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|P35602|AP1M_CAEEL (e_value=1e-139) AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2;; (*TAIR) AT1G60780.1 (e_value=0.0) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc06g071650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40515207-40517639 transcript_region:SL2.40ch06:40515207..40517639- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu (AHRD V1 ***- Q7RVT3_NEUCR); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00007306g0011.1 protein AED:0.24 eAED:0.25 QI:150|1|0.8|1|1|1|5|0|590; (*GB) gi|28273094|dbj|BAC56913.1| (e_value=0.0) nitrate transporter [Nicotiana tabacum];; (*SWP) sp|Q05085|PTR7_ARATH (e_value=0.0) Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1;; (*TAIR) AT1G12110.1 (e_value=0.0) | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | nitrate transporter 1.1 | chr1:4105341-4109290 FORWARD LENGTH=590;; (*ITAG) Solyc08g078950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59776836-59782323 transcript_region:SL2.40ch08:59776836..59782323+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q852P7_TOBAC); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00007306g0012.1 protein AED:0.23 eAED:0.24 QI:664|0.72|0.66|1|0.81|0.75|12|0|716; (*GB) gi|224074681|ref|XP_002304422.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q940Y1|ORP2A_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1;; (*TAIR) AT4G22540.1 (e_value=0.0) | Symbols: ORP2A | OSBP(oxysterol binding protein)-related protein 2A | chr4:11860969-11866108 REVERSE LENGTH=721;; (*ITAG) Solyc08g078960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59785356-59791464 transcript_region:SL2.40ch08:59785356..59791464- go_terms:GO:0008142 functional_description:"Oxysterol-binding family protein (AHRD V1 **** D7ME32_ARALY); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008142 NbS00006875g0004.1 protein AED:0.53 eAED:0.87 QI:0|0|0|0.66|0.5|0.33|3|0|99 NbS00003800g0005.1 protein AED:0.22 eAED:0.22 QI:665|0.83|0.76|1|0.58|0.69|13|463|424; (*GB) gi|225443668|ref|XP_002263226.1| (e_value=0.0) PREDICTED: dual specificity protein kinase shkB [Vitis vinifera];; (*SWP) sp|Q54H46|DRKA_DICDI (e_value=6e-34) Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum GN=drkA PE=3 SV=1;; (*TAIR) AT4G18950.1 (e_value=0.0) | Symbols: | Integrin-linked protein kinase family | chr4:10375685-10378129 FORWARD LENGTH=459;; (*ITAG) Solyc02g071740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35686760-35693727 transcript_region:SL2.40ch02:35686760..35693727- go_terms:GO:0004713,GO:0051219 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 **** PTK6_MOUSE); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004713,GO:0051219 NbS00038573g0004.1 protein AED:0.06 eAED:0.06 QI:17|0.5|0.66|1|1|1|3|136|115 NbS00031603g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.6|1|0.5|0.4|5|0|168; (*GB) gi|9665121|gb|AAF97305.1|AC007843_8 (e_value=2e-96) Unknown protein [Arabidopsis thaliana];; (*SWP) sp|Q9LQI7|CIA30_ARATH (e_value=4e-93) Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2;; (*TAIR) AT1G17350.1 (e_value=3e-94) | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated protein 30 | chr1:5942391-5944272 FORWARD LENGTH=227;; (*ITAG) Solyc11g005060.1.1 (e_value=9e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:55055-59721 transcript_region:SL2.40ch11:55055..59721- functional_description:"Complex I intermediate-associated protein 30 (AHRD V1 ***- B6C4T5_9GAMM); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 "; NbS00049111g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|255542726|ref|XP_002512426.1| (e_value=1e-41) RALFL33, putative [Ricinus communis];; (*TAIR) AT4G15800.1 (e_value=9e-40) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc09g074890.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62196930-62197286 transcript_region:SL2.40ch09:62196930..62197286+ go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 1 (AHRD V1 **-- Q84UC9_9ROSI); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00049111g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|0.88|1|1|1|9|290|440; (*GB) gi|225437302|ref|XP_002263425.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245310 [Vitis vinifera];; (*TAIR) AT1G02910.1 (e_value=0.0) | Symbols: LPA1 | tetratricopeptide repeat (TPR)-containing protein | chr1:655749-658125 REVERSE LENGTH=453;; (*ITAG) Solyc09g074880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62188036-62193261 transcript_region:SL2.40ch09:62188036..62193261+ go_terms:GO:0005488 functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YR0_OSTTA); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; GO:0005488 NbS00055297g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|109; (*GB) gi|76161010|gb|ABA40468.1| (e_value=2e-53) Drm3-like protein [Solanum tuberosum];; (*TAIR) AT1G56220.4 (e_value=3e-31) | Symbols: | Dormancy/auxin associated family protein | chr1:21043414-21044381 FORWARD LENGTH=109;; (*ITAG) Solyc01g099840.2.1 (e_value=8e-56) genomic_reference:SL2.40ch01 gene_region:81745463-81747550 transcript_region:SL2.40ch01:81745463..81747550+ functional_description:"Auxin-repressed protein (AHRD V1 ***- B4FA62_MAIZE); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00030838g0001.1 protein AED:0.16 eAED:0.16 QI:165|0.66|0.75|1|0.66|0.5|4|656|148; (*GB) gi|297799588|ref|XP_002867678.1| (e_value=3e-54) hypothetical protein ARALYDRAFT_492443 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=3e-39) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G24180.1 (e_value=2e-56) | Symbols: TLP1, ATTLP1 | THAUMATIN-LIKE PROTEIN 1 | chr4:12550356-12551221 REVERSE LENGTH=260;; (*ITAG) Solyc04g081560.2.1 (e_value=6e-77) genomic_reference:SL2.40ch04 gene_region:63105875-63108460 transcript_region:SL2.40ch04:63105875..63108460+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00034617g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|293|321; (*GB) gi|225426649|ref|XP_002274756.1| (e_value=3e-109) PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=2e-94) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g007530.2.1 (e_value=6e-153) genomic_reference:SL2.40ch08 gene_region:2071921-2078161 transcript_region:SL2.40ch08:2071921..2078161- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00017481g0006.1 protein AED:0.00 eAED:0.00 QI:12|1|1|1|1|1|2|1516|99; (*GB) gi|147794982|emb|CAN71764.1| (e_value=3e-34) hypothetical protein VITISV_039227 [Vitis vinifera];; (*SWP) sp|P73300|RL36_SYNY3 (e_value=3e-16) 50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpmJ PE=3 SV=1;; (*TAIR) AT5G20180.2 (e_value=7e-33) | Symbols: | Ribosomal protein L36 | chr5:6811312-6811910 FORWARD LENGTH=103;; (*ITAG) Solyc07g008270.2.1 (e_value=4e-47) genomic_reference:SL2.40ch07 gene_region:3030451-3032090 transcript_region:SL2.40ch07:3030451..3032090- go_terms:GO:0005840 functional_description:"50S ribosomal protein L36 (AHRD V1 --*- A6CGQ0_9PLAN); contains Interpro domain(s) IPR000473 Ribosomal protein L36 "; GO:0005840 NbS00017481g0007.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|225445525|ref|XP_002285241.1| (e_value=9e-36) PREDICTED: uncharacterized protein LOC100245670 [Vitis vinifera];; (*TAIR) AT5G25360.2 (e_value=2e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc07g008260.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:3015219-3024992 transcript_region:SL2.40ch07:3015219..3024992- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00002275g0010.1 protein AED:0.06 eAED:0.06 QI:238|0.94|0.9|1|0.73|0.65|20|378|1056; (*GB) gi|75253426|sp|Q66WV0.1|RBR1_NICBE (e_value=0.0) RecName: Full=Retinoblastoma-related protein 1; Short=NbRBR1;; (*SWP) sp|Q66WV0|RBR1_NICBE (e_value=0.0) Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1 PE=2 SV=1;; (*TAIR) AT3G12280.2 (e_value=0.0) | Symbols: RBR1 | retinoblastoma-related 1 | chr3:3913671-3918433 REVERSE LENGTH=1012;; (*ITAG) Solyc09g091280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65919886-65926437 transcript_region:SL2.40ch09:65919886..65926437+ go_terms:GO:0008134 functional_description:"Retinoblastoma-related protein 1 (AHRD V1 ***- Q9M7J0_9ROSI); contains Interpro domain(s) IPR002720 Retinoblastoma-associated protein, A-box "; GO:0008134 NbS00002275g0001.1 protein AED:0.28 eAED:0.29 QI:216|1|0.5|1|0|0|2|0|204; (*GB) gi|225451675|ref|XP_002276426.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100253147 [Vitis vinifera];; (*TAIR) AT5G47920.1 (e_value=2e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19403458-19404021 REVERSE LENGTH=187;; (*ITAG) Solyc09g091270.1.1 (e_value=1e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:65914537-65915031 transcript_region:SL2.40ch09:65914537..65915031- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 ***- Q9FFY5_ARATH)"; NbS00016131g0003.1 protein AED:0.40 eAED:0.40 QI:0|0.4|0.33|1|0.2|0.5|6|33|197; (*GB) gi|225443938|ref|XP_002279094.1| (e_value=3e-42) PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera];; (*SWP) sp|Q0DWT8|RH1_ORYSJ (e_value=1e-29) DEAD-box ATP-dependent RNA helicase 1 OS=Oryza sativa subsp. japonica GN=Os02g0795900 PE=2 SV=1;; (*TAIR) AT4G15850.1 (e_value=2e-30) | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:9001426-9004534 FORWARD LENGTH=522;; (*ITAG) Solyc07g005890.2.1 (e_value=5e-59) genomic_reference:SL2.40ch07 gene_region:729035-737605 transcript_region:SL2.40ch07:729035..737605- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8NUN2_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00027686g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|0.75|0.6|5|308|1037; (*GB) gi|6691125|gb|AAF24497.1|AF213696_1 (e_value=0.0) FH protein NFH2 [Nicotiana tabacum];; (*SWP) sp|Q9SE97|FH1_ARATH (e_value=0.0) Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1;; (*TAIR) AT3G25500.1 (e_value=0.0) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc09g042740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29840544-29844761 transcript_region:SL2.40ch09:29840544..29844761+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00027686g0011.1 protein AED:0.26 eAED:0.28 QI:0|0.75|0.4|1|1|1|5|0|434; (*GB) gi|255583385|ref|XP_002532453.1| (e_value=0.0) acyl-CoA thioesterase, putative [Ricinus communis];; (*SWP) sp|Q9R0X4|ACOT9_MOUSE (e_value=1e-36) Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1;; (*TAIR) AT5G48370.2 (e_value=0.0) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr5:19598666-19600512 REVERSE LENGTH=437;; (*ITAG) Solyc09g042750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29845223-29851412 transcript_region:SL2.40ch09:29845223..29851412- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE)"; GO:0016291 NbS00034505g0004.1 protein AED:0.27 eAED:0.30 QI:0|0.75|0.6|1|0.75|0.8|5|0|540; (*GB) gi|85700242|gb|ABC74565.1| (e_value=0.0) 3-hydroxy-3-methylglutaryl-CoA reductase [Picrorhiza kurrooa];; (*SWP) sp|P29057|HMDH1_HEVBR (e_value=0.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=0.0) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40528275-40531424 transcript_region:SL2.40ch02:40528275..40531424- go_terms:GO:0042282 functional_description:"Hydroxy-methylglutaryl-coenzyme A reductase (AHRD V1 **** O48624_TOBAC); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00040516g0004.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|1|1|3|0|345; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-14) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc03g122200.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00040516g0005.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.6|0.25|0.4|5|0|249; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-20) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00040516g0006.1 protein AED:0.32 eAED:0.41 QI:0|0|0|1|0|0|2|0|97; (*ITAG) Solyc02g062450.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:28623171-28623580 transcript_region:SL2.40ch02:28623171..28623580- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbC23764053g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69; (*GB) gi|1173027|sp|P46290.1|RL31_NICGU (e_value=5e-24) RecName: Full=60S ribosomal protein L31;; (*SWP) sp|P46290|RL31_NICGU (e_value=2e-25) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT4G26230.1 (e_value=1e-25) | Symbols: | Ribosomal protein L31e family protein | chr4:13286026-13286553 FORWARD LENGTH=119;; (*ITAG) Solyc12g008720.1.1 (e_value=2e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2087594-2089246 transcript_region:SL2.40ch12:2087594..2089246+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbC25605006g0001.1 protein AED:0.05 eAED:0.20 QI:0|0|0|1|0|0|2|0|184; (*GB) gi|297740009|emb|CBI30191.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZQA3|PME15_ARATH (e_value=2e-23) Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1;; (*TAIR) AT2G36710.1 (e_value=1e-24) | Symbols: | Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407;; (*ITAG) Solyc10g083810.1.1 (e_value=9e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62889530-62892035 transcript_region:SL2.40ch10:62889530..62892035+ go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9MTJ5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00057024g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|171; (*ITAG) Solyc04g074620.1.1 (e_value=1e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00024464g0008.1 protein AED:0.28 eAED:0.32 QI:0|0.75|0.4|1|0.25|0.4|5|0|185; (*GB) gi|224060385|ref|XP_002300173.1| (e_value=6e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=9e-32) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G24120.1 (e_value=8e-57) | Symbols: | Homeodomain-like superfamily protein | chr3:8705925-8708148 REVERSE LENGTH=295;; (*ITAG) Solyc12g098370.1.1 (e_value=4e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64240497-64244525 transcript_region:SL2.40ch12:64240497..64244525+ go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00024464g0102.1 protein AED:0.18 eAED:0.26 QI:0|0|0|1|1|1|4|0|230 NbS00011061g0006.1 protein AED:0.62 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|105 NbS00011061g0023.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.75|4|0|306; (*GB) gi|225458247|ref|XP_002281308.1| (e_value=2e-129) PREDICTED: putative pectinesterase 11 [Vitis vinifera];; (*SWP) sp|Q9SIJ9|PME11_ARATH (e_value=3e-107) Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1;; (*TAIR) AT2G21610.1 (e_value=3e-108) | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:9245161-9247025 REVERSE LENGTH=352;; (*ITAG) Solyc04g080530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62264977-62267353 transcript_region:SL2.40ch04:62264977..62267353+ go_terms:GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 **** D7LBW7_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00011061g0007.1 protein AED:0.08 eAED:0.08 QI:303|0.33|0.5|1|1|1|4|187|127; (*GB) gi|224082880|ref|XP_002306876.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19530.1 (e_value=3e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6763976-6764686 FORWARD LENGTH=117;; (*ITAG) Solyc04g080540.2.1 (e_value=3e-64) genomic_reference:SL2.40ch04 gene_region:62269475-62271018 transcript_region:SL2.40ch04:62269475..62271018+ go_terms:GO:0005515 functional_description:"ST225 (AHRD V1 ***- B4YYB7_THEHA)"; GO:0005515 NbS00011061g0021.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|1|1|1|5|0|266; (*GB) gi|213385143|dbj|BAG84267.1| (e_value=4e-147) phenylcoumaran benzylic ether reductase [Nicotiana tabacum];; (*SWP) sp|P52577|IFRH_ARATH (e_value=5e-123) Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1;; (*TAIR) AT1G75280.1 (e_value=4e-124) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr1:28252030-28253355 FORWARD LENGTH=310;; (*ITAG) Solyc04g080550.2.1 (e_value=2e-139) genomic_reference:SL2.40ch04 gene_region:62277983-62280069 transcript_region:SL2.40ch04:62277983..62280069+ go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00011061g0005.1 protein AED:0.17 eAED:0.17 QI:68|1|0.8|1|1|1|5|0|308; (*GB) gi|213385143|dbj|BAG84267.1| (e_value=0.0) phenylcoumaran benzylic ether reductase [Nicotiana tabacum];; (*SWP) sp|P52577|IFRH_ARATH (e_value=4e-172) Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1;; (*TAIR) AT1G75280.1 (e_value=3e-173) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr1:28252030-28253355 FORWARD LENGTH=310;; (*ITAG) Solyc04g080550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62277983-62280069 transcript_region:SL2.40ch04:62277983..62280069+ go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00011061g0019.1 protein AED:0.34 eAED:0.34 QI:184|0.75|0.6|1|0.5|0.8|5|0|260; (*GB) gi|224082886|ref|XP_002306878.1| (e_value=4e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6B3|GCA2_ARATH (e_value=8e-149) Gamma carbonic anhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA2 PE=1 SV=1;; (*TAIR) AT1G47260.1 (e_value=6e-150) | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydrase 2 | chr1:17321384-17323347 REVERSE LENGTH=278;; (*ITAG) Solyc04g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62282687-62288606 transcript_region:SL2.40ch04:62282687..62288606+ go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_CLOB6); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00012146g0007.1 protein AED:0.09 eAED:0.14 QI:0|0.71|0.37|1|1|1|8|0|950; (*GB) gi|225454072|ref|XP_002265479.1| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Vitis vinifera];; (*SWP) sp|Q08C72|CWC22_DANRE (e_value=0.0) Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1;; (*TAIR) AT1G80930.1 (e_value=0.0) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc08g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:124884-130281 transcript_region:SL2.40ch08:124884..130281+ go_terms:GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 *-*- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0003723 NbS00012146g0006.1 protein AED:0.36 eAED:0.40 QI:0|0.25|0.6|1|0.75|0.8|5|113|285; (*GB) gi|76573305|gb|ABA46757.1| (e_value=8e-91) syntaxin-like protein [Solanum tuberosum];; (*SWP) sp|P93654|SYP22_ARATH (e_value=8e-75) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=6e-76) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc08g005200.2.1 (e_value=1e-97) genomic_reference:SL2.40ch08 gene_region:130883-136111 transcript_region:SL2.40ch08:130883..136111- go_terms:GO:0005484 functional_description:"Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00037188g0008.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|1|2|0|336; (*GB) gi|350535639|ref|NP_001233949.1| (e_value=3e-135) phytophthora-inhibited protease 1 [Solanum lycopersicum];; (*SWP) sp|O23791|BROM1_ANACO (e_value=8e-91) Fruit bromelain OS=Ananas comosus PE=1 SV=1;; (*TAIR) AT3G49340.1 (e_value=5e-108) | Symbols: | Cysteine proteinases superfamily protein | chr3:18293347-18294577 REVERSE LENGTH=341;; (*ITAG) Solyc03g006210.1.1 (e_value=2e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:837404-839267 transcript_region:SL2.40ch03:837404..839267- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00037188g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|339; (*GB) gi|255564910|ref|XP_002523448.1| (e_value=3e-168) cysteine protease, putative [Ricinus communis];; (*SWP) sp|Q9FGR9|CEP1_ARATH (e_value=5e-131) KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1;; (*TAIR) AT5G45890.1 (e_value=1e-137) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47345935-47347263 transcript_region:SL2.40ch12:47345935..47347263+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00037188g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|112; (*GB) gi|166165119|gb|ABY83921.1| (e_value=6e-65) cytochrome oxidase subunit 1 [Petrea volubilis];; (*SWP) sp|P05502|COX1_SORBI (e_value=4e-61) Cytochrome c oxidase subunit 1 OS=Sorghum bicolor GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=1e-61) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00037188g0102.1 protein AED:0.01 eAED:0.01 QI:71|0|0.5|1|0|0.5|2|52|143 NbS00037188g0110.1 protein AED:0.36 eAED:0.56 QI:0|0|0|1|1|1|2|121|161 NbS00037188g0114.1 protein AED:0.43 eAED:0.88 QI:0|0|0|1|0|0.5|2|0|100 NbS00019725g0006.1 protein AED:0.02 eAED:0.23 QI:0|0|0|1|0|0|2|0|878; (*GB) gi|224096480|ref|XP_002334697.1| (e_value=2e-165) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|P0C8S1|RP8L2_ARATH (e_value=5e-92) Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1;; (*TAIR) AT5G35450.1 (e_value=8e-92) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc02g070750.1.1 (e_value=2e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34952100-34953371 transcript_region:SL2.40ch02:34952100..34953371- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00014826g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|61658204|gb|AAX49392.1| (e_value=9e-42) OLE-4 [Coffea canephora];; (*SWP) sp|Q96543|OLE16_BROSE (e_value=6e-26) Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 SV=1;; (*TAIR) AT5G51210.1 (e_value=8e-26) | Symbols: OLEO3 | oleosin3 | chr5:20820171-20820706 FORWARD LENGTH=141;; (*ITAG) Solyc06g060840.1.1 (e_value=3e-65) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35259037-35259441 transcript_region:SL2.40ch06:35259037..35259441+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q2TM28_COFCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00014826g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.87|0.77|0.88|0.75|1|9|291|233; (*GB) gi|224071175|ref|XP_002303369.1| (e_value=9e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2TBG8|UCHL3_BOVIN (e_value=1e-72) Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1;; (*TAIR) AT4G17510.1 (e_value=3e-129) | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234;; (*ITAG) Solyc06g060850.2.1 (e_value=3e-152) genomic_reference:SL2.40ch06 gene_region:35259703-35265324 transcript_region:SL2.40ch06:35259703..35265324- go_terms:GO:0004843,GO:0004221 functional_description:"Ubiquitin carboxyl-terminal hydrolase isozyme L3 (AHRD V1 **** B6T8R6_MAIZE); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0004843,GO:0004221 NbS00030449g0016.1 protein AED:0.17 eAED:0.42 QI:0|0|0|0.8|0|0.2|5|0|271; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=7e-37) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*TAIR) AT1G18520.1 (e_value=2e-26) | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376178 FORWARD LENGTH=271;; (*ITAG) Solyc06g069320.2.1 (e_value=3e-37) genomic_reference:SL2.40ch06 gene_region:39465510-39467895 transcript_region:SL2.40ch06:39465510..39467895- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00030449g0013.1 protein AED:0.12 eAED:0.12 QI:0|1|0.83|1|1|1|6|0|343; (*GB) gi|255541908|ref|XP_002512018.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|O75716|STK16_HUMAN (e_value=9e-51) Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4;; (*TAIR) AT5G08160.1 (e_value=0.0) | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625903-2627942 REVERSE LENGTH=347;; (*ITAG) Solyc12g038920.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:36907058-36910596 transcript_region:SL2.40ch12:36907058..36910596- go_terms:GO:0004693 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q45HK2_GOSHI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00030449g0015.1 protein AED:0.06 eAED:0.20 QI:0|1|0.75|1|1|1|4|0|169; (*GB) gi|224099217|ref|XP_002311407.1| (e_value=6e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LEY9|NHP2_ARATH (e_value=7e-59) H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1;; (*TAIR) AT5G08180.2 (e_value=5e-60) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631843-2633374 REVERSE LENGTH=156;; (*ITAG) Solyc12g038980.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37136481-37138218 transcript_region:SL2.40ch12:37136481..37138218- functional_description:"50S ribosomal protein L7Ae (AHRD V1 *--- RL7A_NANEQ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; NbS00030449g0014.1 protein AED:0.22 eAED:0.22 QI:0|1|0.88|1|1|1|9|0|360; (*GB) gi|255541906|ref|XP_002512017.1| (e_value=0.0) Agmatine deiminase, putative [Ricinus communis];; (*SWP) sp|Q8GWW7|AGUA_ARATH (e_value=0.0) Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2;; (*TAIR) AT5G08170.1 (e_value=0.0) | Symbols: EMB1873, ATAIH | porphyromonas-type peptidyl-arginine deiminase family protein | chr5:2628663-2631047 REVERSE LENGTH=383;; (*ITAG) Solyc12g038970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37030316-37037719 transcript_region:SL2.40ch12:37030316..37037719- go_terms:GO:0047632,GO:0004668 functional_description:"Agmatine deiminase (AHRD V1 **** B6TJ57_MAIZE); contains Interpro domain(s) IPR017754 Agmatine deiminase "; GO:0047632,GO:0004668 NbS00004901g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|391; (*GB) gi|231503|sp|P30171.1|ACT11_SOLTU (e_value=0.0) RecName: Full=Actin-97;; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00029557g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.90|0.83|1|0.81|0.83|12|509|346; (*GB) gi|224081122|ref|XP_002306301.1| (e_value=4e-128) predicted protein [Populus trichocarpa];; (*TAIR) AT5G10320.1 (e_value=4e-120) | Symbols: | unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3244180-3246603 REVERSE LENGTH=403;; (*ITAG) Solyc11g009060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3182748-3190461 transcript_region:SL2.40ch11:3182748..3190461- functional_description:"Unknown Protein (AHRD V1)"; NbS00029557g0008.1 protein AED:0.30 eAED:0.32 QI:0|0.66|0.5|1|0.66|0.5|4|0|380; (*GB) gi|359496689|ref|XP_002269557.2| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100244969 [Vitis vinifera];; (*TAIR) AT5G65250.1 (e_value=1e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26078699-26080051 REVERSE LENGTH=300;; (*ITAG) Solyc11g009070.1.1 (e_value=5e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3191449-3196487 transcript_region:SL2.40ch11:3191449..3196487- functional_description:"Genomic DNA chromosome 5 P1 clone MQN23 (AHRD V1 ***- Q9FJP0_ARATH)"; NbS00029557g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|521|324; (*GB) gi|225467167|ref|XP_002269291.1| (e_value=4e-152) PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=2e-102) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=2e-103) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc11g009050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3176495-3178519 transcript_region:SL2.40ch11:3176495..3178519+ functional_description:"F-box protein-like (AHRD V1 ***- Q67X80_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024327g0002.1 protein AED:0.09 eAED:0.21 QI:9|0|0|0.5|1|1|2|0|116; (*ITAG) Solyc12g010850.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3779389-3780989 transcript_region:SL2.40ch12:3779389..3780989+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045411g0003.1 protein AED:0.67 eAED:0.80 QI:0|0.27|0.08|0.5|0.90|0.83|12|0|522; (*GB) gi|255575790|ref|XP_002528794.1| (e_value=0.0) nonsense-mediated mRNA decay protein, putative [Ricinus communis];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0.0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=0.0) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00010099g0020.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0.5|1|0.33|0.5|4|0|198; (*GB) gi|224099217|ref|XP_002311407.1| (e_value=1e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LEY9|NHP2_ARATH (e_value=1e-57) H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1;; (*TAIR) AT5G08180.2 (e_value=1e-58) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631843-2633374 REVERSE LENGTH=156;; (*ITAG) Solyc12g038980.1.1 (e_value=5e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37136481-37138218 transcript_region:SL2.40ch12:37136481..37138218- functional_description:"50S ribosomal protein L7Ae (AHRD V1 *--- RL7A_NANEQ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; NbS00010099g0018.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|0|267; (*GB) gi|357477799|ref|XP_003609185.1| (e_value=9e-161) Serine/threonine protein kinase [Medicago truncatula];; (*SWP) sp|P57760|STK16_RAT (e_value=6e-42) Serine/threonine-protein kinase 16 OS=Rattus norvegicus GN=Stk16 PE=2 SV=2;; (*TAIR) AT5G08160.1 (e_value=2e-155) | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625903-2627942 REVERSE LENGTH=347;; (*ITAG) Solyc06g069330.2.1 (e_value=7e-176) genomic_reference:SL2.40ch06 gene_region:39468885-39473184 transcript_region:SL2.40ch06:39468885..39473184+ go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q8L9Q3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00010099g0019.1 protein AED:0.23 eAED:0.23 QI:138|1|0.88|1|0.62|0.66|9|0|347; (*GB) gi|255541906|ref|XP_002512017.1| (e_value=0.0) Agmatine deiminase, putative [Ricinus communis];; (*SWP) sp|Q8GWW7|AGUA_ARATH (e_value=0.0) Agmatine deiminase OS=Arabidopsis thaliana GN=AIH PE=1 SV=2;; (*TAIR) AT5G08170.1 (e_value=0.0) | Symbols: EMB1873, ATAIH | porphyromonas-type peptidyl-arginine deiminase family protein | chr5:2628663-2631047 REVERSE LENGTH=383;; (*ITAG) Solyc12g038970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37030316-37037719 transcript_region:SL2.40ch12:37030316..37037719- go_terms:GO:0047632,GO:0004668 functional_description:"Agmatine deiminase (AHRD V1 **** B6TJ57_MAIZE); contains Interpro domain(s) IPR017754 Agmatine deiminase "; GO:0047632,GO:0004668 NbS00010099g0014.1 protein AED:0.43 eAED:0.65 QI:0|0.5|0.33|1|0|0|3|29|57 NbC24672410g0001.1 protein AED:0.27 eAED:0.27 QI:70|-1|0|1|-1|1|1|71|33 NbS00032231g0002.1 protein AED:0.09 eAED:0.88 QI:0|-1|0|1|-1|1|1|0|376; (*GB) gi|40288318|gb|AAR84197.1| (e_value=7e-46) putative 6 repeat proteinase inhibitor [Nicotiana attenuata];; (*SWP) sp|P56615|IP21_CAPAN (e_value=2e-16) Proteinase inhibitor PSI-1.1 OS=Capsicum annuum PE=1 SV=1;; (*ITAG) Solyc03g020070.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:6927180-6928245 transcript_region:SL2.40ch03:6927180..6928245- go_terms:GO:0004867 functional_description:"Proteinase inhibitor II (AHRD V1 ***- Q3S483_SOLTU); contains Interpro domain(s) IPR003465 Proteinase inhibitor I20, Pin2 "; GO:0004867 NbS00029902g0003.1 protein AED:0.27 eAED:0.34 QI:125|0.5|0.53|0.93|0.85|0.93|15|555|505; (*GB) gi|255544137|ref|XP_002513131.1| (e_value=0.0) protein arginine n-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q08A71|ANM6_ARATH (e_value=0.0) Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1;; (*TAIR) AT3G20020.1 (e_value=0.0) | Symbols: ATPRMT6, PRMT6 | protein arginine methyltransferase 6 | chr3:6984055-6987945 REVERSE LENGTH=435;; (*ITAG) Solyc04g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2475731-2485874 transcript_region:SL2.40ch04:2475731..2485874- go_terms:GO:0035242 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 **** D7LAV3_ARALY); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00035705g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|0.8|0.75|0.6|5|42|581; (*GB) gi|359496932|ref|XP_003635376.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853530 [Vitis vinifera];; (*TAIR) AT2G22840.1 (e_value=2e-108) | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530;; (*ITAG) Solyc02g092070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47855277-47859821 transcript_region:SL2.40ch02:47855277..47859821+ go_terms:GO:0005515,GO:0016563 functional_description:"Growth regulating factor 1 (Fragment) (AHRD V1 *--- A6MZS4_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005515,GO:0016563 NbS00010232g0016.1 protein AED:0.10 eAED:0.10 QI:0|0.37|0.33|0.66|0.25|0.44|9|0|705; (*GB) gi|225435347|ref|XP_002282455.1| (e_value=0.0) PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Vitis vinifera];; (*SWP) sp|Q9SL29|CNG15_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1;; (*TAIR) AT2G28260.1 (e_value=0.0) | Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678;; (*ITAG) Solyc09g007840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1373797-1376961 transcript_region:SL2.40ch09:1373797..1376961- go_terms:GO:0031722,GO:0031721 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0031722,GO:0031721 NbS00010232g0013.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|3|0|258; (*GB) gi|12230584|sp|Q08935.1|ROC1_NICSY (e_value=1e-107) RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName: Full=CP29A; Flags: Precursor;; (*SWP) sp|Q08935|ROC1_NICSY (e_value=4e-109) 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT2G37220.1 (e_value=2e-79) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289;; (*ITAG) Solyc09g007850.2.1 (e_value=2e-97) genomic_reference:SL2.40ch09 gene_region:1377722-1380930 transcript_region:SL2.40ch09:1377722..1380930- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 **-* C6F119_SOYBN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00010232g0015.1 protein AED:0.17 eAED:0.17 QI:196|1|1|1|1|1|7|254|221; (*GB) gi|384081614|ref|NP_001244911.1| (e_value=6e-144) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 [Solanum lycopersicum];; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=7e-143) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.1 (e_value=6e-144) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215;; (*ITAG) Solyc09g007830.2.1 (e_value=1e-150) genomic_reference:SL2.40ch09 gene_region:1356808-1361135 transcript_region:SL2.40ch09:1356808..1361135- go_terms:GO:0016831 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831 NbS00010232g0014.1 protein AED:0.24 eAED:0.24 QI:207|1|0.92|1|1|1|13|325|546; (*GB) gi|225449024|ref|XP_002272997.1| (e_value=0.0) PREDICTED: extended synaptotagmin-2 [Vitis vinifera];; (*SWP) sp|Q3TZZ7|ESYT2_MOUSE (e_value=7e-29) Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1;; (*TAIR) AT5G04220.2 (e_value=0.0) | Symbols: SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3, SYT3 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:1155985-1158620 REVERSE LENGTH=540;; (*ITAG) Solyc09g007860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1382071-1388219 transcript_region:SL2.40ch09:1382071..1388219- functional_description:"Plant synaptotagmin (AHRD V1 **-- D7LXG6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00055548g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|447; (*GB) gi|224139330|ref|XP_002323059.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7X996|CIPK2_ORYSJ (e_value=0.0) CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1;; (*TAIR) AT5G58380.1 (e_value=0.0) | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting protein 1 | chr5:23597092-23598531 REVERSE LENGTH=479;; (*ITAG) Solyc09g042660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29278782-29280336 transcript_region:SL2.40ch09:29278782..29280336- go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 22 (AHRD V1 **** A0MNK8_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000593g0009.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.33|1|0.5|0.33|3|0|179; (*GB) gi|156915045|gb|ABU97107.1| (e_value=3e-84) MYB305 protein v1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=5e-80) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT3G27810.1 (e_value=4e-64) | Symbols: ATMYB21, ATMYB3, MYB21 | myb domain protein 21 | chr3:10307596-10310093 FORWARD LENGTH=226;; (*ITAG) Solyc02g067760.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:32454233-32457848 transcript_region:SL2.40ch02:32454233..32457848- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B8YIB6_MIRJA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000593g0008.1 protein AED:0.15 eAED:0.15 QI:138|1|1|1|1|1|7|149|482; (*GB) gi|224055551|ref|XP_002298535.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK94|MDAR2_ARATH (e_value=0.0) Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1;; (*TAIR) AT3G27820.1 (e_value=0.0) | Symbols: ATMDAR4, MDAR4 | monodehydroascorbate reductase 4 | chr3:10315249-10317881 FORWARD LENGTH=488;; (*ITAG) Solyc02g086710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43930486-43935980 transcript_region:SL2.40ch02:43930486..43935980+ go_terms:GO:0005524,GO:0016656 functional_description:"Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0005524,GO:0016656 NbS00018004g0004.1 protein AED:0.15 eAED:0.15 QI:154|0.75|0.8|1|0.5|0.6|5|260|344; (*GB) gi|357438517|ref|XP_003589534.1| (e_value=2e-155) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=6e-137) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=4e-138) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc04g081770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63283322-63285545 transcript_region:SL2.40ch04:63283322..63285545+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00019875g0004.1 protein AED:0.12 eAED:0.31 QI:0|0.2|0|0.83|0.2|0.16|6|0|192; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=4e-54) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=5e-34) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=4e-35) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=1e-67) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbC25677456g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=4e-26) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=1e-27) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*ITAG) Solyc06g064520.2.1 (e_value=8e-29) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00022325g0008.1 protein AED:0.26 eAED:0.29 QI:0|0.76|0.66|1|0.58|0.72|18|307|588; (*GB) gi|350539607|ref|NP_001233960.1| (e_value=4e-96) mitogen-activated protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q53N72|MPK15_ORYSJ (e_value=8e-88) Mitogen-activated protein kinase 15 OS=Oryza sativa subsp. japonica GN=MPK15 PE=2 SV=1;; (*TAIR) AT3G18040.1 (e_value=2e-87) | Symbols: MPK9 | MAP kinase 9 | chr3:6174800-6178150 FORWARD LENGTH=510;; (*ITAG) Solyc04g007710.2.1 (e_value=1e-98) genomic_reference:SL2.40ch04 gene_region:1389688-1396477 transcript_region:SL2.40ch04:1389688..1396477- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase (AHRD V1 ***- Q1W2K7_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024786g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|357439753|ref|XP_003590154.1| (e_value=6e-19) F-box protein SKIP19 [Medicago truncatula];; (*SWP) sp|Q9M0U9|SKI19_ARATH (e_value=5e-20) F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1;; (*TAIR) AT4G05460.1 (e_value=4e-21) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g013820.2.1 (e_value=1e-30) genomic_reference:SL2.40ch08 gene_region:3170642-3174481 transcript_region:SL2.40ch08:3170642..3174481- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00028859g0001.1 protein AED:0.15 eAED:0.16 QI:381|0.7|0.85|0.95|0.95|0.90|21|0|688; (*GB) gi|225423672|ref|XP_002276491.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera];; (*SWP) sp|Q8C754|VPS52_MOUSE (e_value=5e-117) Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1;; (*TAIR) AT1G71270.1 (e_value=0.0) | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707;; (*ITAG) Solyc02g094090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49292983-49310119 transcript_region:SL2.40ch02:49292983..49310119- functional_description:"Vacuolar protein sorting 52 (AHRD V1 **-- Q5TJF1_CANFA); contains Interpro domain(s) IPR007258 Vps52/Sac2 "; NbS00032061g0004.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|192; (*GB) gi|224130118|ref|XP_002328658.1| (e_value=7e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73885.1 (e_value=1e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27786864-27787708 FORWARD LENGTH=192;; (*ITAG) Solyc06g069170.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:39334693-39336861 transcript_region:SL2.40ch06:39334693..39336861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015940g0005.1 protein AED:0.40 eAED:0.44 QI:0|0.91|0.84|1|1|1|13|0|307; (*GB) gi|192910838|gb|ACF06527.1| (e_value=5e-145) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|Q7F613|SCAM2_ORYSJ (e_value=3e-133) Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=9e-133) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc10g009180.2.1 (e_value=3e-171) genomic_reference:SL2.40ch10 gene_region:3177983-3185483 transcript_region:SL2.40ch10:3177983..3185483+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00024098g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.71|1|0.66|0.71|7|389|528; (*GB) gi|224146035|ref|XP_002325855.1| (e_value=3e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1D4|DRB4_ARATH (e_value=5e-50) Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1;; (*TAIR) AT3G62800.3 (e_value=3e-51) | Symbols: | double-stranded-RNA-binding protein 4 | chr3:23225749-23227163 REVERSE LENGTH=329;; (*ITAG) Solyc01g056620.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:47922648-47930463 transcript_region:SL2.40ch01:47922648..47930463+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- B5BUY7_ARATH); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00024098g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|60; (*GB) gi|7672732|gb|AAF66615.1| (e_value=5e-33) LRR receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|P43298|TMK1_ARATH (e_value=3e-29) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=2e-31) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc01g108840.2.1 (e_value=3e-33) genomic_reference:SL2.40ch01 gene_region:87756900-87761019 transcript_region:SL2.40ch01:87756900..87761019- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00011174g0003.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|68 NbS00011174g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.87|0.77|1|0.75|0.88|9|366|596; (*GB) gi|255545546|ref|XP_002513833.1| (e_value=0.0) Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q39008|M3K1_ARATH (e_value=6e-138) Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2;; (*TAIR) AT4G08500.1 (e_value=5e-139) | Symbols: MEKK1, ATMEKK1, MAPKKK8, ARAKIN | MAPK/ERK kinase kinase 1 | chr4:5404272-5407062 REVERSE LENGTH=608;; (*ITAG) Solyc07g053170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58941217-58949834 transcript_region:SL2.40ch07:58941217..58949834- go_terms:GO:0019900,GO:0004709 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019900,GO:0004709 NbS00011174g0001.1 protein AED:0.28 eAED:0.31 QI:265|0|0.5|1|0|0.5|2|0|316; (*GB) gi|225459453|ref|XP_002284359.1| (e_value=1e-97) PREDICTED: uncharacterized protein LOC100259117 [Vitis vinifera];; (*TAIR) AT1G68140.2 (e_value=6e-68) | Symbols: | Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=308;; (*ITAG) Solyc12g006700.1.1 (e_value=7e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1165391-1166395 transcript_region:SL2.40ch12:1165391..1166395- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00005827g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|1|1|3|0|157; (*GB) gi|255564158|ref|XP_002523076.1| (e_value=2e-92) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G66080.1 (e_value=7e-86) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:24600356-24601027 REVERSE LENGTH=190;; (*ITAG) Solyc05g056560.2.1 (e_value=3e-102) genomic_reference:SL2.40ch05 gene_region:64961444-64962429 transcript_region:SL2.40ch05:64961444..64962429- functional_description:"C11orf73 homolog (AHRD V1 ***- B5XFA0_SALSA); contains Interpro domain(s) IPR008493 Protein of unknown function DUF775 "; NbC26275936g0004.1 protein AED:0.07 eAED:0.07 QI:79|1|1|1|0.66|0.75|4|411|422; (*GB) gi|113205161|gb|AAX95765.2| (e_value=8e-109) hypothetical protein LES1_20t00016 [Solanum lycopersicum];; (*TAIR) AT1G74860.1 (e_value=7e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits to 193 proteins in 61 species: Archae - 0; Bacteria - 9; Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:28123432-28125600 FORWARD LENGTH=400;; (*ITAG) Solyc06g071250.2.1 (e_value=2e-113) genomic_reference:SL2.40ch06 gene_region:40224229-40229504 transcript_region:SL2.40ch06:40224229..40229504+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034969g0001.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|4|0|71 NbS00013981g0002.1 protein AED:0.39 eAED:0.49 QI:280|0.33|0.25|1|0|0.25|4|0|132; (*ITAG) Solyc03g116360.1.1 (e_value=5e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59885244-59893377 transcript_region:SL2.40ch03:59885244..59893377+ go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00031169g0005.1 protein AED:0.25 eAED:0.25 QI:84|1|0.8|1|1|1|5|0|408; (*GB) gi|359478878|ref|XP_002280779.2| (e_value=5e-44) PREDICTED: uncharacterized protein LOC100246735 [Vitis vinifera];; (*SWP) sp|Q10422|YDC1_SCHPO (e_value=1e-15) Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1;; (*TAIR) AT1G07350.1 (e_value=2e-38) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382;; (*ITAG) Solyc06g076670.2.1 (e_value=1e-48) genomic_reference:SL2.40ch06 gene_region:44003102-44006569 transcript_region:SL2.40ch06:44003102..44006569+ go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00002348g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|172; (*GB) gi|23507177|gb|AAN38002.1| (e_value=4e-77) LEA1-like protein [Capsicum annuum];; (*SWP) sp|P46519|LEA14_SOYBN (e_value=9e-68) Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G46140.1 (e_value=4e-56) | Symbols: | Late embryogenesis abundant protein | chr2:18959163-18960362 FORWARD LENGTH=166;; (*ITAG) Solyc10g011900.2.1 (e_value=5e-90) genomic_reference:SL2.40ch10 gene_region:4183524-4185077 transcript_region:SL2.40ch10:4183524..4185077- go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (AHRD V1 **-- B5TV69_CAMSI); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00012392g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|0.75|1|1|4|0|159; (*GB) gi|388499480|gb|AFK37806.1| (e_value=1e-112) unknown [Lotus japonicus];; (*SWP) sp|Q8LGF7|PEX4_ARATH (e_value=2e-110) Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1;; (*TAIR) AT5G25760.2 (e_value=1e-111) | Symbols: PEX4 | peroxin4 | chr5:8967983-8969173 FORWARD LENGTH=157;; (*ITAG) Solyc11g071260.1.1 (e_value=2e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51878146-51882669 transcript_region:SL2.40ch11:51878146..51882669- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 (AHRD V1 ***- B6K7Y4_SCHJY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00053451g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|146; (*ITAG) Solyc05g041470.2.1 (e_value=8e-34) genomic_reference:SL2.40ch05 gene_region:50961226-50966509 transcript_region:SL2.40ch05:50961226..50966509- functional_description:"Transient receptor potential cation channel subfamily A member 1 homolog (AHRD V1 *--- TRPA1_CAEEL); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00022281g0006.1 protein AED:0.23 eAED:0.26 QI:0|0.6|0.16|1|0.6|0.66|6|0|1088; (*GB) gi|255575375|ref|XP_002528590.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O94913|PCF11_HUMAN (e_value=4e-19) Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3;; (*TAIR) AT2G36480.1 (e_value=5e-64) | Symbols: | ENTH/VHS family protein | chr2:15303114-15306274 REVERSE LENGTH=830;; (*ITAG) Solyc09g009120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2454280-2462187 transcript_region:SL2.40ch09:2454280..2462187+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; GO:0005622 NbS00022281g0007.1 protein AED:0.00 eAED:0.00 QI:93|1|1|1|1|1|3|325|88; (*GB) gi|23466403|tpg|DAA00292.1| (e_value=9e-24) TPA: TPA_exp: putative phytosulfokine peptide precursor [Solanum tuberosum];; (*ITAG) Solyc09g009130.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:2464801-2466118 transcript_region:SL2.40ch09:2464801..2466118- go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00005736g0009.1 protein AED:0.01 eAED:0.06 QI:0|0|0.2|1|0|0.2|5|221|622; (*GB) gi|38045387|gb|AAR08678.1| (e_value=0.0) EIN2 [Petunia x hybrida];; (*SWP) sp|Q9S814|EIN2_ARATH (e_value=5e-103) Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1 SV=1;; (*TAIR) AT5G03280.1 (e_value=4e-104) | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 | NRAMP metal ion transporter family protein | chr5:788589-793066 FORWARD LENGTH=1294;; (*ITAG) Solyc09g007870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1401117-1407730 transcript_region:SL2.40ch09:1401117..1407730+ go_terms:GO:0005515 functional_description:"Manganese transporter mntH (AHRD V1 *--- D1CW90_9RHIZ); contains Interpro domain(s) IPR017187 Ethylene-insensitive 2 "; GO:0005515 NbS00035314g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|132 NbS00026852g0007.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|805; (*GB) gi|162134185|gb|ABX82524.1| (e_value=0.0) S-locus F-box-like protein d [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=9e-32) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=7e-33) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc01g057190.1.1 (e_value=4e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:52595109-52596272 transcript_region:SL2.40ch01:52595109..52596272- functional_description:"F-box (AHRD V1 ***- Q84KQ9_PRUMU); contains Interpro domain(s) IPR006527 F-box associated "; NbS00031068g0002.1 protein AED:0.55 eAED:0.55 QI:190|0|0.33|0.33|1|1|3|0|80 NbS00035394g0008.1 protein AED:0.07 eAED:0.07 QI:183|0|0.33|1|0.5|0.33|3|0|399; (*GB) gi|48210029|gb|AAT40540.1| (e_value=1e-132) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=4e-117) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=3e-118) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=1e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00047737g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.5|0.33|3|0|361; (*GB) gi|76803801|gb|ABA55805.1| (e_value=0.0) delta-8 sphingolipid desaturase [Crepis alpina];; (*SWP) sp|A4IFP3|FADS3_BOVIN (e_value=2e-22) Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc10g011810.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4042221-4043855 transcript_region:SL2.40ch10:4042221..4043855- go_terms:GO:0004768,GO:0042284 functional_description:"Fatty acid delta-6 desaturase (AHRD V1 **** Q84KG6_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00042435g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|225441325|ref|XP_002276334.1| (e_value=7e-60) PREDICTED: probable calcium-binding protein CML35 [Vitis vinifera];; (*SWP) sp|Q9SS31|CML36_ARATH (e_value=2e-35) Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1;; (*TAIR) AT3G10190.1 (e_value=1e-36) | Symbols: | Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209;; (*ITAG) Solyc10g079420.1.1 (e_value=4e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60282482-60283099 transcript_region:SL2.40ch10:60282482..60283099+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6TKX0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00024110g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.71|0.6|0.93|0.71|0.73|15|449|628; (*GB) gi|225464297|ref|XP_002265101.1| (e_value=0.0) PREDICTED: protein transport protein SEC23-like [Vitis vinifera];; (*SWP) sp|A4R1J7|SEC23_MAGO7 (e_value=2e-169) Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1;; (*TAIR) AT2G21630.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr2:9250346-9253829 FORWARD LENGTH=761;; (*ITAG) Solyc01g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72907113-72928750 transcript_region:SL2.40ch01:72907113..72928750+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00022851g0005.1 protein AED:0.20 eAED:0.25 QI:226|0.64|0.6|1|0.57|0.6|15|209|465; (*GB) gi|224122662|ref|XP_002330437.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A5WW08|CHFR_DANRE (e_value=3e-15) E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1;; (*TAIR) AT1G47570.1 (e_value=2e-164) | Symbols: | RING/U-box superfamily protein | chr1:17478919-17483229 FORWARD LENGTH=466;; (*ITAG) Solyc03g078230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:43759846-43774381 transcript_region:SL2.40ch03:43759846..43774381+ go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase CHFR (AHRD V1 ***- CHFR_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00029214g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|98; (*ITAG) Solyc08g044370.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00029214g0001.1 protein AED:0.97 eAED:0.97 QI:0|0|0|0.2|1|1|5|0|172 NbS00019792g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|0.66|0.5|0.66|3|147|212; (*GB) gi|297737444|emb|CBI26645.3| (e_value=2e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G04630.1 (e_value=6e-33) | Symbols: | Protein of unknown function, DUF584 | chr4:2332163-2332669 REVERSE LENGTH=168;; (*ITAG) Solyc07g064650.1.1 (e_value=2e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63932607-63933143 transcript_region:SL2.40ch07:63932607..63933143+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00038943g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0.5|2|0|67 NbS00023674g0004.1 protein AED:0.30 eAED:0.30 QI:567|1|0.90|1|0.8|0.90|11|0|305; (*GB) gi|359486223|ref|XP_002265374.2| (e_value=2e-127) PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera];; (*TAIR) AT4G18530.1 (e_value=8e-124) | Symbols: | Protein of unknown function (DUF707) | chr4:10217749-10220285 FORWARD LENGTH=389;; (*ITAG) Solyc01g103170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83589714-83597304 transcript_region:SL2.40ch01:83589714..83597304- go_terms:GO:0006508 functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; GO:0006508 NbS00029016g0005.1 protein AED:0.17 eAED:0.18 QI:243|0.57|0.75|1|0.85|1|8|0|331; (*GB) gi|38228677|emb|CAE54075.1| (e_value=2e-151) serine/threonine-protein kinase [Fagus sylvatica];; (*SWP) sp|Q9FFP9|SRK2H_ARATH (e_value=2e-147) Serine/threonine-protein kinase SRK2H OS=Arabidopsis thaliana GN=SRK2H PE=1 SV=1;; (*TAIR) AT5G63650.1 (e_value=1e-148) | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related protein kinase 2.5 | chr5:25481631-25483495 REVERSE LENGTH=360;; (*ITAG) Solyc05g056550.2.1 (e_value=1e-160) genomic_reference:SL2.40ch05 gene_region:64959381-64961447 transcript_region:SL2.40ch05:64959381..64961447+ go_terms:GO:0006970,GO:0006468 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- Q70CF4_FAGSY); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0006970,GO:0006468 NbS00013657g0009.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|4|0|150; (*GB) gi|343409100|gb|AEM23830.1| (e_value=2e-33) sesquiterpene synthase [Solanum habrochaites];; (*ITAG) Solyc12g006570.1.1 (e_value=9e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00013657g0005.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|343409100|gb|AEM23830.1| (e_value=8e-20) sesquiterpene synthase [Solanum habrochaites];; (*ITAG) Solyc07g051940.2.1 (e_value=2e-23) genomic_reference:SL2.40ch07 gene_region:57815208-57818076 transcript_region:SL2.40ch07:57815208..57818076- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00036955g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|0.33|3|0|182; (*GB) gi|359483706|ref|XP_002264787.2| (e_value=3e-25) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q8RY17|WAKLI_ARATH (e_value=9e-23) Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1;; (*TAIR) AT1G79670.2 (e_value=7e-24) | Symbols: RFO1, WAKL22 | Wall-associated kinase family protein | chr1:29976887-29979337 REVERSE LENGTH=714;; (*ITAG) Solyc07g007020.2.1 (e_value=1e-33) genomic_reference:SL2.40ch07 gene_region:1807863-1812535 transcript_region:SL2.40ch07:1807863..1812535- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00036955g0001.1 protein AED:0.13 eAED:0.13 QI:431|0|0.5|1|0|0.5|2|0|384; (*GB) gi|225459882|ref|XP_002262834.1| (e_value=4e-162) PREDICTED: uncharacterized protein LOC100244872 isoform 1 [Vitis vinifera];; (*SWP) sp|O05235|YUGF_BACSU (e_value=4e-21) Uncharacterized hydrolase yugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1;; (*TAIR) AT5G38520.1 (e_value=9e-150) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15421605-15423234 FORWARD LENGTH=362;; (*ITAG) Solyc02g070490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34802037-34804618 transcript_region:SL2.40ch02:34802037..34804618- functional_description:"Alpha/beta hydrolase fold (AHRD V1 ***- B6SU76_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00023082g0006.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.5|1|1|4|0|384; (*GB) gi|255547089|ref|XP_002514602.1| (e_value=1e-37) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LSL6|DOF57_ARATH (e_value=4e-31) Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1;; (*TAIR) AT5G65590.1 (e_value=3e-32) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26212084-26213034 REVERSE LENGTH=316;; (*ITAG) Solyc11g010940.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3987715-3989539 transcript_region:SL2.40ch11:3987715..3989539- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00023082g0008.1 protein AED:0.27 eAED:0.27 QI:45|0.87|0.66|1|0.87|0.77|9|0|331; (*GB) gi|224133036|ref|XP_002321466.1| (e_value=1e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPQ3|GEK1_ARATH (e_value=1e-143) D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2;; (*TAIR) AT2G03800.1 (e_value=8e-145) | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317;; (*ITAG) Solyc06g069390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39540431-39546469 transcript_region:SL2.40ch06:39540431..39546469- go_terms:GO:0051499 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** DTDA_ARCFU); contains Interpro domain(s) IPR018033 Uncharacterized conserved protein UCP016210 "; GO:0051499 NbS00010872g0302.1 protein AED:0.37 eAED:0.63 QI:51|0.16|0.14|0.85|1|1|7|0|175 NbS00015133g0019.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|0|0.33|3|0|261; (*GB) gi|224055659|ref|XP_002298589.1| (e_value=3e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|P81394|MYB15_ANTMA (e_value=3e-58) Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1;; (*TAIR) AT5G14340.1 (e_value=2e-62) | Symbols: AtMYB40, MYB40 | myb domain protein 40 | chr5:4623367-4624779 FORWARD LENGTH=263;; (*ITAG) Solyc02g093740.2.1 (e_value=2e-71) genomic_reference:SL2.40ch02 gene_region:49050918-49052171 transcript_region:SL2.40ch02:49050918..49052171- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00015133g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|363; (*GB) gi|224099809|ref|XP_002311628.1| (e_value=7e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22450.1 (e_value=4e-69) | Symbols: | Ribosomal L18p/L5e family protein | chr3:7962443-7963378 FORWARD LENGTH=311;; (*ITAG) Solyc03g005180.1.1 (e_value=1e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:114186-115265 transcript_region:SL2.40ch03:114186..115265+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7L1Q2_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00015133g0020.1 protein AED:0.28 eAED:0.33 QI:0|0.87|0.66|1|0.5|0.55|9|0|1114; (*GB) gi|359477348|ref|XP_002278432.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247619 [Vitis vinifera];; (*TAIR) AT4G14920.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr4:8531157-8535842 REVERSE LENGTH=1138;; (*ITAG) Solyc03g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:101151-112258 transcript_region:SL2.40ch03:101151..112258+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00015133g0021.1 protein AED:0.40 eAED:0.40 QI:0|0.5|0.42|0.71|1|1|7|0|179; (*GB) gi|158263556|gb|ABW24494.1| (e_value=5e-78) O-acetylserine(thiol)-lyase [Sesamum indicum];; (*SWP) sp|Q43317|CYSK_CITLA (e_value=4e-74) Cysteine synthase OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT4G14880.4 (e_value=2e-69) | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322;; (*ITAG) Solyc09g082060.2.1 (e_value=1e-77) genomic_reference:SL2.40ch09 gene_region:63298831-63303187 transcript_region:SL2.40ch09:63298831..63303187+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q3LAG5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00015133g0022.1 protein AED:0.21 eAED:0.21 QI:175|0.85|0.87|1|0.85|0.75|8|0|245; (*GB) gi|224141271|ref|XP_002323998.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|P57758|CTNS_ARATH (e_value=3e-94) Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1;; (*TAIR) AT5G40670.1 (e_value=3e-95) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270;; (*ITAG) Solyc03g005120.2.1 (e_value=2e-143) genomic_reference:SL2.40ch03 gene_region:77827-81235 transcript_region:SL2.40ch03:77827..81235- go_terms:GO:0015184 functional_description:"Cystine transporter Cystinosin (AHRD V1 **** Q2URL9_ASPOR); contains Interpro domain(s) IPR005282 Lysosomal cystine transporter "; GO:0015184 NbS00015133g0023.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0.5|2|0|218; (*GB) gi|356536003|ref|XP_003536530.1| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100778094 [Glycine max];; (*TAIR) AT3G22530.1 (e_value=8e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977774-7978370 REVERSE LENGTH=198;; (*ITAG) Solyc03g005190.2.1 (e_value=8e-44) genomic_reference:SL2.40ch03 gene_region:115979-117377 transcript_region:SL2.40ch03:115979..117377- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 *-*- Q8LD29_ARATH); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00015133g0007.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|356536003|ref|XP_003536530.1| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100778094 [Glycine max];; (*TAIR) AT3G22530.1 (e_value=1e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977774-7978370 REVERSE LENGTH=198;; (*ITAG) Solyc03g005190.2.1 (e_value=1e-46) genomic_reference:SL2.40ch03 gene_region:115979-117377 transcript_region:SL2.40ch03:115979..117377- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 *-*- Q8LD29_ARATH); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00015133g0024.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|2|0|78; (*GB) gi|357480899|ref|XP_003610735.1| (e_value=3e-30) hypothetical protein MTR_5g006430 [Medicago truncatula];; (*TAIR) AT3G22540.1 (e_value=2e-28) | Symbols: | Protein of unknown function (DUF1677) | chr3:7984233-7984565 REVERSE LENGTH=110;; (*ITAG) Solyc09g082190.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63394455-63394805 transcript_region:SL2.40ch09:63394455..63394805- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00016430g0005.1 protein AED:0.34 eAED:0.48 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-13) hypothetical protein [Nicotiana tabacum]; NbS00009886g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|359497412|ref|XP_003635507.1| (e_value=3e-98) PREDICTED: uncharacterized protein LOC100852615 [Vitis vinifera];; (*TAIR) AT4G35720.1 (e_value=2e-50) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16927972-16928949 FORWARD LENGTH=325;; (*ITAG) Solyc02g083120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41214861-41215814 transcript_region:SL2.40ch02:41214861..41215814+ functional_description:"CM0216.240.nc protein (AHRD V1 ***- B0BLH5_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00009886g0015.1 protein AED:0.11 eAED:0.12 QI:0|0.62|0.55|1|0.75|0.66|9|223|536; (*GB) gi|224071359|ref|XP_002303421.1| (e_value=2e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=2e-29) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT4G35730.1 (e_value=2e-96) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr4:16931111-16933241 FORWARD LENGTH=466;; (*ITAG) Solyc02g083130.2.1 (e_value=1e-127) genomic_reference:SL2.40ch02 gene_region:41218468-41222010 transcript_region:SL2.40ch02:41218468..41222010+ functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00009886g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|359497469|ref|XP_003635528.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=9e-40) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083090.1.1 (e_value=2e-144) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41201725-41202534 transcript_region:SL2.40ch02:41201725..41202534+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00009886g0016.1 protein AED:0.31 eAED:0.33 QI:0|0.11|0|0.5|0|0|10|0|299; (*ITAG) Solyc02g083080.1.1 (e_value=6e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41198435-41200028 transcript_region:SL2.40ch02:41198435..41200028- functional_description:"Unknown Protein (AHRD V1)"; NbS00037811g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|158; (*GB) gi|359491947|ref|XP_003634344.1| (e_value=1e-25) PREDICTED: uncharacterized protein LOC100267722 [Vitis vinifera];; (*ITAG) Solyc04g077620.1.1 (e_value=2e-55) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:60169868-60170242 transcript_region:SL2.40ch04:60169868..60170242+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042850g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|1|1|1|4|0|260; (*GB) gi|359431001|gb|AEV46311.1| (e_value=2e-80) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=2e-60) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.2 (e_value=4e-54) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19508833 REVERSE LENGTH=524;; (*ITAG) Solyc09g010090.2.1 (e_value=8e-82) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00042850g0002.1 protein AED:0.39 eAED:0.39 QI:105|1|0.83|1|0.4|0.5|6|0|150; (*GB) gi|82623419|gb|ABB87124.1| (e_value=4e-86) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q9CAX6|RS142_ARATH (e_value=3e-80) 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1;; (*TAIR) AT3G11510.1 (e_value=2e-81) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=7e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00021692g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.83|1|1|1|6|292|565; (*GB) gi|225463242|ref|XP_002270360.1| (e_value=0.0) PREDICTED: 4-coumarate--CoA ligase-like 6 [Vitis vinifera];; (*SWP) sp|Q84P24|4CLL6_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2;; (*TAIR) AT4G19010.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr4:10411715-10414221 REVERSE LENGTH=566;; (*ITAG) Solyc08g076300.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57430047-57434352 transcript_region:SL2.40ch08:57430047..57434352- go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9GZT7_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00014259g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.22|0.88|0.75|0.88|9|0|796; (*GB) gi|225425902|ref|XP_002271378.1| (e_value=0.0) PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera];; (*SWP) sp|O76094|SRP72_HUMAN (e_value=3e-63) Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72 PE=1 SV=3;; (*TAIR) AT1G67680.1 (e_value=0.0) | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664;; (*ITAG) Solyc11g062270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "; GO:0005047 NbS00010697g0010.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|0.5|2|0|75; (*GB) gi|356573333|ref|XP_003554816.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100775274 [Glycine max];; (*ITAG) Solyc02g086500.2.1 (e_value=8e-29) genomic_reference:SL2.40ch02 gene_region:43746420-43759951 transcript_region:SL2.40ch02:43746420..43759951+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGF10 (AHRD V1 **-- Q9LVX3_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00010697g0009.1 protein AED:0.17 eAED:0.25 QI:0|0|0|1|0.33|0.14|7|0|783; (*GB) gi|118153871|gb|ABK63961.1| (e_value=0.0) PT2 [Solanum melongena];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=0.0) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=0.0) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc03g005560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00022411g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|633; (*GB) gi|359494917|ref|XP_002271060.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249189 [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=4e-63) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT5G64550.1 (e_value=0.0) | Symbols: | loricrin-related | chr5:25801794-25803698 REVERSE LENGTH=634;; (*ITAG) Solyc01g104910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84985560-84988138 transcript_region:SL2.40ch01:84985560..84988138- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00041253g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|4|0|192; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015070g0011.1 protein AED:0.09 eAED:0.10 QI:0|1|0.66|1|0.8|0.66|6|0|632; (*GB) gi|225446267|ref|XP_002267381.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257549 [Vitis vinifera];; (*TAIR) AT1G15910.1 (e_value=0.0) | Symbols: | XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634;; (*ITAG) Solyc03g117040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60351139-60357181 transcript_region:SL2.40ch03:60351139..60357181- functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00015070g0012.1 protein AED:0.22 eAED:0.22 QI:164|1|0.66|1|0.6|0.5|6|258|143; (*GB) gi|225465502|ref|XP_002272092.1| (e_value=6e-75) PREDICTED: 40S ribosomal protein S12-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9XHS0|RS12_HORVU (e_value=3e-68) 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1;; (*TAIR) AT2G32060.2 (e_value=7e-57) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144;; (*ITAG) Solyc01g103800.2.1 (e_value=2e-82) genomic_reference:SL2.40ch01 gene_region:84081046-84083324 transcript_region:SL2.40ch01:84081046..84083324- go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S12 (AHRD V1 ***- A9P9K3_POPTR); contains Interpro domain(s) IPR000530 Ribosomal protein S12e "; GO:0003735,GO:0003723 NbS00017456g0001.1 protein AED:0.32 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|304; (*GB) gi|255539483|ref|XP_002510806.1| (e_value=3e-177) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2Z5|FBL53_ARATH (e_value=5e-145) F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1;; (*TAIR) AT3G48880.2 (e_value=4e-146) | Symbols: | RNI-like superfamily protein | chr3:18127873-18129008 FORWARD LENGTH=309;; (*ITAG) Solyc03g025920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7714580-7716038 transcript_region:SL2.40ch03:7714580..7716038+ functional_description:"F-box family protein (AHRD V1 ***- D7LS19_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00060753g0009.1 protein AED:0.16 eAED:0.24 QI:0|0.16|0|1|0.33|0.28|7|0|761; (*GB) gi|359490050|ref|XP_002268598.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=5e-177) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=4e-178) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc05g051640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61175509-61181215 transcript_region:SL2.40ch05:61175509..61181215+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00060753g0011.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.4|0.8|0.75|0.6|5|0|354; (*GB) gi|224139188|ref|XP_002326790.1| (e_value=2e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25190.1 (e_value=2e-45) | Symbols: QWRF7 | Family of unknown function (DUF566) | chr4:12914400-12916001 REVERSE LENGTH=394;; (*ITAG) Solyc05g051650.1.1 (e_value=9e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61181368-61184805 transcript_region:SL2.40ch05:61181368..61184805- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *--- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00023918g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|1|0.5|4|0|185; (*GB) gi|49532988|dbj|BAD26595.1| (e_value=4e-112) chorismate mutase [Nicotiana tabacum];; (*SWP) sp|P42738|CHMU_ARATH (e_value=2e-54) Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=3;; (*TAIR) AT5G10870.1 (e_value=6e-75) | Symbols: ATCM2, CM2 | chorismate mutase 2 | chr5:3430691-3432272 REVERSE LENGTH=265;; (*ITAG) Solyc11g017240.1.1 (e_value=6e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8039271-8042521 transcript_region:SL2.40ch11:8039271..8042521- go_terms:GO:0009073,GO:0046417 functional_description:"Chorismate mutase 2 (AHRD V1 ***- D2CSU5_PETHY); contains Interpro domain(s) IPR008238 Chorismate mutase of the AroQ class, eukaryotic type "; GO:0009073,GO:0046417 NbS00003807g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|167; (*ITAG) Solyc11g020320.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10842641-10843468 transcript_region:SL2.40ch11:10842641..10843468- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRQ1_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00003807g0013.1 protein AED:0.40 eAED:0.40 QI:406|1|0.66|1|1|1|3|0|76 NbS00040691g0004.1 protein AED:0.12 eAED:0.12 QI:167|1|0.83|1|0.4|0.5|6|0|173; (*GB) gi|71081904|gb|AAZ23261.1| (e_value=9e-84) senescence-associated protein [Nicotiana tabacum];; (*SWP) sp|Q38853|STR15_ARATH (e_value=1e-33) Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1;; (*TAIR) AT4G35770.2 (e_value=7e-36) | Symbols: SEN1, ATSEN1, DIN1 | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:16945073-16945840 FORWARD LENGTH=161;; (*ITAG) Solyc02g083280.2.1 (e_value=5e-65) genomic_reference:SL2.40ch02 gene_region:41305686-41308404 transcript_region:SL2.40ch02:41305686..41308404+ go_terms:GO:0004792 functional_description:"Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 (AHRD V1 *--* TSTD1_HUMAN); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792 NbS00059456g0007.1 protein AED:0.12 eAED:0.12 QI:103|1|0.8|1|0.25|0.4|5|0|609; (*GB) gi|356500557|ref|XP_003519098.1| (e_value=0.0) PREDICTED: nitrate transporter 1.2-like [Glycine max];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00009253g0008.1 protein AED:0.14 eAED:0.16 QI:0|1|0.88|1|0.75|0.88|9|28|305; (*GB) gi|225455455|ref|XP_002274702.1| (e_value=0.0) PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FJ82|DAPB3_ARATH (e_value=2e-171) Putative dihydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1;; (*TAIR) AT5G52100.1 (e_value=1e-172) | Symbols: crr1 | Dihydrodipicolinate reductase, bacterial/plant | chr5:21170203-21172107 FORWARD LENGTH=298;; (*ITAG) Solyc03g026210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7987974-7992103 transcript_region:SL2.40ch03:7987974..7992103- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Dihydrodipicolinate reductase family protein (AHRD V1 ***- D7MRM8_ARALY); contains Interpro domain(s) IPR011770 Dihydrodipicolinate reductase, bacterial and plant "; GO:0008152,GO:0005737,GO:0055114 NbS00009253g0009.1 protein AED:0.26 eAED:0.26 QI:247|1|1|1|0.62|0.55|9|1277|315; (*GB) gi|297741104|emb|CBI31835.3| (e_value=2e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G52110.2 (e_value=1e-100) | Symbols: HCF208 | Protein of unknown function (DUF2930) | chr5:21172159-21173953 REVERSE LENGTH=275;; (*ITAG) Solyc03g026200.2.1 (e_value=3e-174) genomic_reference:SL2.40ch03 gene_region:7982237-7987700 transcript_region:SL2.40ch03:7982237..7987700+ functional_description:"Os10g0522500 protein (Fragment) (AHRD V1 *-*- Q0IWA4_ORYSJ)"; NbS00061313g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|147780475|emb|CAN75757.1| (e_value=6e-82) hypothetical protein VITISV_028561 [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=3e-31) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT3G55560.1 (e_value=2e-53) | Symbols: AGF2, AHL15 | AT-hook protein of GA feedback 2 | chr3:20604904-20605836 REVERSE LENGTH=310;; (*ITAG) Solyc05g053000.1.1 (e_value=3e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62313115-62314056 transcript_region:SL2.40ch05:62313115..62314056+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00003201g0005.1 protein AED:0.28 eAED:0.28 QI:117|0.78|0.8|0.93|0.78|0.66|15|78|491; (*GB) gi|359491379|ref|XP_002278753.2| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=3e-151) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=2e-153) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc06g071560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40443925-40450397 transcript_region:SL2.40ch06:40443925..40450397+ go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00002263g0007.1 protein AED:0.15 eAED:0.15 QI:259|0.75|0.8|1|1|1|5|291|313; (*GB) gi|296090402|emb|CBI40221.3| (e_value=2e-117) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LBZ4|OTU_ARATH (e_value=1e-44) OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1;; (*TAIR) AT3G57810.1 (e_value=3e-47) | Symbols: | Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=274;; (*ITAG) Solyc11g007590.1.1 (e_value=6e-165) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1850470-1852640 transcript_region:SL2.40ch11:1850470..1852640+ functional_description:"OTU domain-containing protein 4 (AHRD V1 *-*- OTUD4_HUMAN); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00002263g0008.1 protein AED:0.15 eAED:0.15 QI:627|0.77|0.8|1|0.66|0.7|10|222|422; (*GB) gi|224109926|ref|XP_002315357.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q67VS7|CSLA9_ORYSJ (e_value=0.0) Probable mannan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc11g007600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1854302-1857613 transcript_region:SL2.40ch11:1854302..1857613- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-* A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00012900g0005.1 protein AED:0.09 eAED:0.09 QI:260|1|0.8|1|0.64|0.66|15|0|897; (*GB) gi|350535751|ref|NP_001234467.1| (e_value=0.0) aminodeoxychorismate synthase/glutamine amidotransferase [Solanum lycopersicum];; (*SWP) sp|P32483|PABS_STRGR (e_value=2e-156) Para-aminobenzoate synthase OS=Streptomyces griseus GN=pab PE=3 SV=1;; (*TAIR) AT2G28880.1 (e_value=0.0) | Symbols: emb1997, ADCS | para-aminobenzoate (PABA) synthase family protein | chr2:12398937-12403108 REVERSE LENGTH=919;; (*ITAG) Solyc04g049360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40766130-40778394 transcript_region:SL2.40ch04:40766130..40778394- go_terms:GO:0005515,GO:0046820 functional_description:"4-amino-4-deoxychorismate synthase component I (AHRD V1 **** D9W9C0_STRHY); contains Interpro domain(s) IPR005802 Para-aminobenzoate synthase, component I "; GO:0005515,GO:0046820 NbS00048625g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.75|0.87|0.57|0.62|8|371|272; (*GB) gi|255582236|ref|XP_002531910.1| (e_value=7e-78) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L649|BB_ARATH (e_value=2e-57) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT3G63530.2 (e_value=2e-58) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc01g087060.2.1 (e_value=1e-134) genomic_reference:SL2.40ch01 gene_region:73754738-73759711 transcript_region:SL2.40ch01:73754738..73759711- go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00003496g0001.1 protein AED:0.01 eAED:0.01 QI:1134|0.66|0.75|1|0.33|0.5|4|26|357; (*GB) gi|312283005|dbj|BAJ34368.1| (e_value=0.0) unnamed protein product [Thellungiella halophila];; (*SWP) sp|P27323|HS901_ARATH (e_value=0.0) Heat shock protein 90-1 OS=Arabidopsis thaliana GN=HSP90-1 PE=1 SV=3;; (*TAIR) AT5G52640.1 (e_value=0.0) | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352542-21355147 FORWARD LENGTH=705;; (*ITAG) Solyc03g007890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2410871-2414110 transcript_region:SL2.40ch03:2410871..2414110- go_terms:GO:0042623 functional_description:"Heat shock protein 90 (Fragment) (AHRD V1 **-- Q2L3T8_WHEAT); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623 NbS00003496g0006.1 protein AED:0.01 eAED:0.01 QI:72|1|0.66|1|0|0|3|0|129; (*GB) gi|356513345|ref|XP_003525374.1| (e_value=4e-50) PREDICTED: uncharacterized protein LOC100784242 [Glycine max];; (*TAIR) AT1G01490.2 (e_value=2e-24) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc03g007870.2.1 (e_value=9e-29) genomic_reference:SL2.40ch03 gene_region:2399937-2401187 transcript_region:SL2.40ch03:2399937..2401187- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00042226g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|170 NbS00004236g0003.1 protein AED:0.10 eAED:0.10 QI:539|1|0.71|1|1|0.85|7|0|768; (*GB) gi|147855614|emb|CAN83465.1| (e_value=0.0) hypothetical protein VITISV_038667 [Vitis vinifera];; (*SWP) sp|Q9SJA4|CNG14_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2;; (*TAIR) AT2G24610.1 (e_value=0.0) | Symbols: ATCNGC14, CNGC14 | cyclic nucleotide-gated channel 14 | chr2:10457105-10460351 FORWARD LENGTH=726;; (*ITAG) Solyc08g069140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55418170-55422079 transcript_region:SL2.40ch08:55418170..55422079+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00061479g0004.1 protein AED:0.04 eAED:0.04 QI:65|0.33|0.25|0.5|0.66|0.75|4|0|976; (*GB) gi|255561552|ref|XP_002521786.1| (e_value=0.0) Disease resistance protein RPP13, putative [Ricinus communis];; (*SWP) sp|P0C8S1|RP8L2_ARATH (e_value=6e-172) Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1;; (*TAIR) AT1G53350.1 (e_value=7e-171) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc12g096920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63982696-63986146 transcript_region:SL2.40ch12:63982696..63986146+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00046133g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.66|0.75|4|417|260; (*GB) gi|225457081|ref|XP_002283199.1| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100256944 [Vitis vinifera];; (*ITAG) Solyc06g071380.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:40311694-40314918 transcript_region:SL2.40ch06:40311694..40314918+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007979g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|0.66|0.75|4|0|584; (*GB) gi|254028670|gb|ACT53268.1| (e_value=0.0) transport inhibitor response 1 [Nicotiana tabacum];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=0.0) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=0.0) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc09g074520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00026277g0001.1 protein AED:0.13 eAED:0.13 QI:6|0.2|0.16|1|1|1|6|0|286; (*GB) gi|224081467|ref|XP_002306421.1| (e_value=6e-98) predicted protein [Populus trichocarpa];; (*TAIR) AT2G17500.4 (e_value=8e-87) | Symbols: | Auxin efflux carrier family protein | chr2:7607063-7608990 FORWARD LENGTH=396;; (*ITAG) Solyc02g082450.2.1 (e_value=2e-103) genomic_reference:SL2.40ch02 gene_region:40726154-40728736 transcript_region:SL2.40ch02:40726154..40728736+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7L9F0_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00026277g0005.1 protein AED:0.80 eAED:0.94 QI:0|0|0|0.66|1|1|3|0|108; (*ITAG) Solyc08g079250.2.1 (e_value=5e-12) genomic_reference:SL2.40ch08 gene_region:60025771-60033618 transcript_region:SL2.40ch08:60025771..60033618+ go_terms:GO:0008289 functional_description:"Lipid transfer protein (AHRD V1 *-** O22110_PICAB); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00050921g0004.1 protein AED:0.08 eAED:0.08 QI:606|0.75|0.8|1|0.5|0.6|5|0|881; (*GB) gi|255552750|ref|XP_002517418.1| (e_value=0.0) mannosidase alpha class 2a, putative [Ricinus communis];; (*SWP) sp|P49641|MA2A2_HUMAN (e_value=1e-167) Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3;; (*TAIR) AT5G14950.1 (e_value=0.0) | Symbols: GMII, ATGMII | golgi alpha-mannosidase II | chr5:4837484-4841792 REVERSE LENGTH=1173;; (*ITAG) Solyc02g087290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44316266-44321821 transcript_region:SL2.40ch02:44316266..44321821- go_terms:GO:0004572 functional_description:"Alpha-mannosidase-like protein (AHRD V1 **** Q9LFR0_ARATH); contains Interpro domain(s) IPR000602 Glycoside hydrolase, family 38, core "; GO:0004572 NbS00050921g0012.1 protein AED:0.26 eAED:0.28 QI:0|0.33|0.25|1|0.66|0|4|0|486; (*GB) gi|359488751|ref|XP_003633812.1| (e_value=3e-178) PREDICTED: probable peptide/nitrate transporter At5g14940-like [Vitis vinifera];; (*SWP) sp|Q9LFR1|PTR50_ARATH (e_value=7e-153) Probable peptide/nitrate transporter At5g14940 OS=Arabidopsis thaliana GN=At5g14940 PE=2 SV=1;; (*TAIR) AT5G14940.1 (e_value=5e-154) | Symbols: | Major facilitator superfamily protein | chr5:4831748-4834312 REVERSE LENGTH=552;; (*ITAG) Solyc02g087280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44306751-44310454 transcript_region:SL2.40ch02:44306751..44310454- go_terms:GO:0080054 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054 NbS00050921g0014.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|3|0|325; (*GB) gi|6683539|dbj|BAA89236.1| (e_value=2e-129) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT3G01360.2 (e_value=2e-70) | Symbols: | Family of unknown function (DUF716) | chr3:137772-138731 REVERSE LENGTH=319;; (*ITAG) Solyc02g087260.1.1 (e_value=2e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44301840-44302850 transcript_region:SL2.40ch02:44301840..44302850+ functional_description:"TMV response-related protein (AHRD V1 *--- B6UBT3_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00035942g0001.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-53) hypothetical protein [Nicotiana tabacum]; NbS00014653g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|1|1|3|0|126; (*GB) gi|255584751|ref|XP_002533094.1| (e_value=1e-59) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G59400.1 (e_value=1e-54) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=299;; (*ITAG) Solyc06g076250.2.1 (e_value=2e-75) genomic_reference:SL2.40ch06 gene_region:43763435-43767560 transcript_region:SL2.40ch06:43763435..43767560+ functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 **-- Q9LTI9_ARATH)"; NbS00004962g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|652; (*GB) gi|255565099|ref|XP_002523542.1| (e_value=0.0) Endosomal P24A protein precursor, putative [Ricinus communis];; (*SWP) sp|A5D7E2|TM9S4_BOVIN (e_value=4e-150) Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2;; (*TAIR) AT5G35160.2 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658;; (*ITAG) Solyc12g010390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3440122-3442095 transcript_region:SL2.40ch12:3440122..3442095- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 **** B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00004962g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.94|0.88|1|0.82|0.88|18|406|576; (*GB) gi|359484753|ref|XP_002264815.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256872 [Vitis vinifera];; (*SWP) sp|Q9FIJ7|KADC2_ARATH (e_value=4e-68) Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1;; (*TAIR) AT5G35170.1 (e_value=0.0) | Symbols: | adenylate kinase family protein | chr5:13419278-13423482 FORWARD LENGTH=588;; (*ITAG) Solyc12g010380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3429721-3438938 transcript_region:SL2.40ch12:3429721..3438938- go_terms:GO:0004017,GO:0006139 functional_description:"Adenylate kinase-like protein (AHRD V1 ***- Q8VYL1_ARATH); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; GO:0004017,GO:0006139 NbS00023249g0005.1 protein AED:0.15 eAED:0.15 QI:291|1|1|1|0.66|0.85|7|428|270; (*GB) gi|34978966|gb|AAQ83692.1| (e_value=1e-177) C-4 sterol methyl oxidase 2 [Nicotiana benthamiana];; (*SWP) sp|Q8VWZ8|SMO22_ARATH (e_value=1e-163) Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1;; (*TAIR) AT2G29390.2 (e_value=5e-166) | Symbols: ATSMO2 | sterol 4-alpha-methyl-oxidase 2-2 | chr2:12610758-12612799 REVERSE LENGTH=260;; (*ITAG) Solyc06g005750.2.1 (e_value=3e-179) genomic_reference:SL2.40ch06 gene_region:785189-789735 transcript_region:SL2.40ch06:785189..789735- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00038902g0007.1 protein AED:0.04 eAED:0.04 QI:45|0.87|0.88|1|0.75|0.77|9|714|328; (*GB) gi|224126305|ref|XP_002319806.1| (e_value=5e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NQ81|PP304_ARATH (e_value=5e-91) Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana GN=At4g04790 PE=2 SV=2;; (*TAIR) AT4G04790.1 (e_value=4e-92) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2435007-2439344 REVERSE LENGTH=821;; (*ITAG) Solyc07g064110.2.1 (e_value=3e-158) genomic_reference:SL2.40ch07 gene_region:63606120-63618223 transcript_region:SL2.40ch07:63606120..63618223- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEM9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038902g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.87|0.77|1|0.5|0.66|9|0|521; (*GB) gi|359493757|ref|XP_002279701.2| (e_value=3e-173) PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O49711|PP335_ARATH (e_value=1e-104) Pentatricopeptide repeat-containing protein At4g21880, mitochondrial OS=Arabidopsis thaliana GN=At4g21880 PE=2 SV=2;; (*TAIR) AT4G21880.1 (e_value=1e-105) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11605156-11610651 FORWARD LENGTH=843;; (*ITAG) Solyc07g064110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63606120-63618223 transcript_region:SL2.40ch07:63606120..63618223- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEM9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038902g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|224115218|ref|XP_002316975.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT1G51100.1 (e_value=2e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18934342-18934977 FORWARD LENGTH=211;; (*ITAG) Solyc07g064100.1.1 (e_value=7e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63604876-63605484 transcript_region:SL2.40ch07:63604876..63605484+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017199g0015.1 protein AED:0.12 eAED:0.12 QI:189|1|1|1|0.8|0.66|6|317|215; (*GB) gi|298201213|gb|ADI60302.1| (e_value=2e-153) ER luminal protein receptor 2a [Nicotiana benthamiana];; (*SWP) sp|P35402|ERD2_ARATH (e_value=8e-130) ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1;; (*TAIR) AT1G29330.1 (e_value=6e-131) | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein retaining receptor family protein | chr1:10258580-10260906 REVERSE LENGTH=215;; (*ITAG) Solyc02g072120.2.1 (e_value=4e-154) genomic_reference:SL2.40ch02 gene_region:35976352-35983439 transcript_region:SL2.40ch02:35976352..35983439- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor (AHRD V1 ***- D7PF43_NICBE); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00017199g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|6|171|475; (*GB) gi|15226261|ref|NP_180972.1| (e_value=0.0) protein transport protein SEC61 subunit alpha [Arabidopsis thaliana];; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=0.0) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1;; (*TAIR) AT2G34250.2 (e_value=0.0) | Symbols: | SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475;; (*ITAG) Solyc02g072130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35987256-35990574 transcript_region:SL2.40ch02:35987256..35990574+ go_terms:GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0015450 NbS00021995g0008.1 protein AED:0.23 eAED:0.25 QI:0|0.86|0.82|0.95|0.72|0.73|23|0|1125; (*GB) gi|296081171|emb|CBI18197.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=0.0) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G76850.1 (e_value=0.0) | Symbols: SEC5A | exocyst complex component sec5 | chr1:28848013-28854282 FORWARD LENGTH=1090;; (*ITAG) Solyc04g071350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55866523-55892059 transcript_region:SL2.40ch04:55866523..55892059+ functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q6PGY8_DANRE)"; NbS00004946g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|4|0|645; (*GB) gi|225424193|ref|XP_002280520.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 10-like [Vitis vinifera];; (*SWP) sp|Q9C9A6|PUB10_ARATH (e_value=0.0) U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1;; (*TAIR) AT1G71020.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:26790825-26793105 REVERSE LENGTH=628;; (*ITAG) Solyc04g007640.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1318689-1322070 transcript_region:SL2.40ch04:1318689..1322070+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 10 (AHRD V1 **-- PUB10_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00046891g0010.1 protein AED:0.09 eAED:0.09 QI:142|1|0.87|1|1|1|8|0|544; (*GB) gi|359482487|ref|XP_003632781.1| (e_value=6e-174) PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL1-like [Vitis vinifera];; (*SWP) sp|Q1PFE1|AIL1_ARATH (e_value=2e-125) AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1;; (*TAIR) AT1G72570.1 (e_value=1e-126) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:27331381-27333698 FORWARD LENGTH=415;; (*ITAG) Solyc03g123430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64336005-64339974 transcript_region:SL2.40ch03:64336005..64339974- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00046891g0013.1 protein AED:0.09 eAED:0.16 QI:216|0.37|0.17|0.94|0.68|0.70|17|0|1826; (*GB) gi|356546049|ref|XP_003541444.1| (e_value=1e-114) PREDICTED: protein ROS1-like [Glycine max];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=7e-100) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=3e-101) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc03g123440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64341847-64352070 transcript_region:SL2.40ch03:64341847..64352070- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00058703g0005.1 protein AED:0.09 eAED:0.09 QI:141|0.5|1|1|0|0.33|3|247|220; (*GB) gi|255560193|ref|XP_002521114.1| (e_value=3e-86) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G48850.1 (e_value=5e-72) | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306;; (*ITAG) Solyc06g007970.2.1 (e_value=5e-118) genomic_reference:SL2.40ch06 gene_region:1822287-1825304 transcript_region:SL2.40ch06:1822287..1825304- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00028101g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|288; (*GB) gi|169674674|gb|ACA64703.1| (e_value=2e-131) subtilase [Nicotiana tabacum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=2e-53) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G01900.1 (e_value=8e-56) | Symbols: ATSBT1.1, SBTI1.1 | subtilase family protein | chr1:310332-313011 FORWARD LENGTH=774;; (*ITAG) Solyc01g087850.2.1 (e_value=6e-130) genomic_reference:SL2.40ch01 gene_region:74480717-74483824 transcript_region:SL2.40ch01:74480717..74483824+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00028101g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|3|0|592; (*GB) gi|169674676|gb|ACA64704.1| (e_value=0.0) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=9e-116) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=1e-124) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74463598-74466208 transcript_region:SL2.40ch01:74463598..74466208+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00056488g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|439493|dbj|BAA05079.1| (e_value=7e-76) zinc-finger protein [Petunia x hybrida];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=2e-52) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=1e-53) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc04g077980.1.1 (e_value=5e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60443326-60444108 transcript_region:SL2.40ch04:60443326..60444108+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00006002g0007.1 protein AED:0.04 eAED:0.04 QI:222|1|1|1|1|1|5|392|215; (*GB) gi|359497145|ref|XP_002264869.2| (e_value=6e-63) PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8W463|RK191_ARATH (e_value=3e-58) 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1;; (*TAIR) AT4G17560.1 (e_value=2e-59) | Symbols: | Ribosomal protein L19 family protein | chr4:9780343-9781752 FORWARD LENGTH=225;; (*ITAG) Solyc08g078010.2.1 (e_value=4e-88) genomic_reference:SL2.40ch08 gene_region:59052085-59055703 transcript_region:SL2.40ch08:59052085..59055703- go_terms:GO:0005840 functional_description:"50S ribosomal protein L19 (AHRD V1 *-*- B6T8M1_MAIZE); contains Interpro domain(s) IPR001857 Ribosomal protein L19 "; GO:0005840 NbS00006002g0001.1 protein AED:0.25 eAED:0.25 QI:1170|1|1|1|1|1|4|190|134; (*GB) gi|356541222|ref|XP_003539079.1| (e_value=4e-39) PREDICTED: vesicle-associated protein 2-1-like [Glycine max];; (*SWP) sp|Q9LVU1|VAP21_ARATH (e_value=3e-37) Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1;; (*TAIR) AT5G47180.2 (e_value=3e-38) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161384-19163265 REVERSE LENGTH=220;; (*ITAG) Solyc08g078000.2.1 (e_value=1e-72) genomic_reference:SL2.40ch08 gene_region:59044988-59050700 transcript_region:SL2.40ch08:59044988..59050700- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MPW2_ARALY); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005198 NbS00014837g0001.1 protein AED:0.02 eAED:0.02 QI:88|1|1|1|1|1|2|267|114; (*GB) gi|21952514|gb|AAM82606.1| (e_value=2e-48) putative non-specific lipid transfer protein StnsLTP [Solanum tuberosum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=9e-50) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=3e-22) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075070.1.1 (e_value=3e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58109657-58110129 transcript_region:SL2.40ch10:58109657..58110129- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00014837g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.2|0.16|1|0|0|6|0|306; (*GB) gi|7320714|emb|CAB81919.1| (e_value=3e-74) putative protein [Arabidopsis thaliana];; (*TAIR) AT5G01360.1 (e_value=2e-46) | Symbols: TBL3 | Plant protein of unknown function (DUF828) | chr5:147608-149316 REVERSE LENGTH=434;; (*ITAG) Solyc10g076570.1.1 (e_value=5e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58865969-58867855 transcript_region:SL2.40ch10:58865969..58867855- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00009758g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|169; (*GB) gi|218176264|ref|YP_002364481.1| (e_value=1e-16) ribosomal protein S12 [Festuca arundinacea];; (*SWP) sp|P48856|RR12_HORVU (e_value=1e-17) 30S ribosomal protein S12, chloroplastic OS=Hordeum vulgare GN=rps12-A PE=3 SV=1;; (*ITAG) ATCG00905.1 (e_value=3e-18) | Symbols: RPS12C, RPS12 | ribosomal protein S12C | chrC:97999-98793 REVERSE LENGTH=123;; (*ITAG) Solyc11g021130.1.1 (e_value=8e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13369106-13370634 transcript_region:SL2.40ch11:13369106..13370634- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S7 chloroplastic (AHRD V1 *-*- D3WBE1_9BORA); contains Interpro domain(s) IPR005717 Ribosomal protein S7, bacterial-type "; GO:0005840,GO:0015935 NbS00028175g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|62241065|dbj|BAD93689.1| (e_value=2e-137) glycosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SK82|U85A1_ARATH (e_value=2e-93) UDP-glycosyltransferase 85A1 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1;; (*TAIR) AT1G22400.1 (e_value=1e-94) | Symbols: UGT85A1, ATUGT85A1 | UDP-Glycosyltransferase superfamily protein | chr1:7903851-7906607 REVERSE LENGTH=489;; (*ITAG) Solyc12g057080.1.1 (e_value=4e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48495849-48497411 transcript_region:SL2.40ch12:48495849..48497411+ go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-- Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00003220g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|382; (*GB) gi|157932074|gb|ABW05088.1| (e_value=6e-165) ovate-like protein [Nicotiana tabacum];; (*TAIR) AT2G18500.1 (e_value=1e-28) | Symbols: ATOFP7, OFP7 | ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315;; (*ITAG) Solyc03g034100.2.1 (e_value=2e-46) genomic_reference:SL2.40ch03 gene_region:10070572-10072340 transcript_region:SL2.40ch03:10070572..10072340+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00003220g0110.1 protein AED:0.52 eAED:0.52 QI:46|0|0.5|0.5|0|0|2|0|78 NbS00003220g0108.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|261|287 NbS00003220g0109.1 protein AED:0.02 eAED:0.02 QI:259|1|1|1|0.75|0.8|5|66|610 NbS00028669g0014.1 protein AED:0.22 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|420; (*GB) gi|359497683|ref|XP_002270506.2| (e_value=0.0) PREDICTED: ammonium transporter 3 member 1-like, partial [Vitis vinifera];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=6e-176) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=5e-165) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc03g033300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9161531-9164072 transcript_region:SL2.40ch03:9161531..9164072+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9I5F0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00028669g0009.1 protein AED:0.26 eAED:0.26 QI:180|0.66|0.85|1|1|1|7|219|290; (*GB) gi|10177121|dbj|BAB10411.1| (e_value=2e-130) prolyl 4-hydroxylase, alpha subunit-like protein [Arabidopsis thaliana];; (*SWP) sp|P54001|P4HA1_RAT (e_value=3e-23) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT5G66060.1 (e_value=1e-132) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:26419481-26421118 FORWARD LENGTH=289;; (*ITAG) Solyc03g033320.2.1 (e_value=1e-158) genomic_reference:SL2.40ch03 gene_region:9178481-9182945 transcript_region:SL2.40ch03:9178481..9182945+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9FKX6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00028669g0013.1 protein AED:0.31 eAED:0.31 QI:140|1|0.85|1|0.5|0.42|7|354|218; (*GB) gi|1781299|emb|CAA70700.1| (e_value=9e-58) transformer-SR ribonucleoprotein [Nicotiana tabacum];; (*TAIR) AT4G35785.1 (e_value=2e-45) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=238;; (*ITAG) Solyc03g033310.2.1 (e_value=9e-61) genomic_reference:SL2.40ch03 gene_region:9164130-9168788 transcript_region:SL2.40ch03:9164130..9168788- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- B6JZH8_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbC23969391g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|10798636|emb|CAC12818.1| (e_value=9e-71) elongation factor 2 [Nicotiana tabacum];; (*SWP) sp|O23755|EF2_BETVU (e_value=3e-62) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT1G56070.1 (e_value=1e-62) | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843;; (*ITAG) Solyc08g062920.2.1 (e_value=5e-52) genomic_reference:SL2.40ch08 gene_region:49546793-49552256 transcript_region:SL2.40ch08:49546793..49552256- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00034050g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|1|0.66|3|0|193; (*GB) gi|356523165|ref|XP_003530212.1| (e_value=2e-110) PREDICTED: laccase-17-like [Glycine max];; (*SWP) sp|Q10ND7|LAC10_ORYSJ (e_value=2e-102) Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=1e-101) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g010990.2.1 (e_value=2e-117) genomic_reference:SL2.40ch09 gene_region:4344657-4347241 transcript_region:SL2.40ch09:4344657..4347241+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00000618g0012.1 protein AED:0.01 eAED:0.01 QI:1805|0.8|0.83|1|0|0.16|6|526|113 NbS00000618g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0.5|2|0|322; (*GB) gi|147799316|emb|CAN61497.1| (e_value=2e-131) hypothetical protein VITISV_032988 [Vitis vinifera];; (*TAIR) AT2G23790.1 (e_value=4e-83) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc04g079910.2.1 (e_value=5e-164) genomic_reference:SL2.40ch04 gene_region:61818808-61820555 transcript_region:SL2.40ch04:61818808..61820555- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00000618g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|469071|dbj|BAA03742.1| (e_value=2e-50) RNA-binding glycine-rich protein-1b [Nicotiana sylvestris];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=1e-42) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=3e-42) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc10g051390.1.1 (e_value=5e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47556796-47557568 transcript_region:SL2.40ch10:47556796..47557568+ go_terms:GO:0008266 functional_description:"RNA-binding glycine-rich protein-1b (AHRD V1 **** Q40427_NICSY); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00001238g0003.1 protein AED:0.27 eAED:0.33 QI:0|0|0|1|0|0|3|0|173; (*GB) gi|224058673|ref|XP_002299596.1| (e_value=3e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G13980.1 (e_value=6e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). | chr3:4619189-4620262 REVERSE LENGTH=357;; (*ITAG) Solyc03g121970.1.1 (e_value=5e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64025487-64026713 transcript_region:SL2.40ch03:64025487..64026713+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00049423g0005.1 protein AED:0.31 eAED:0.37 QI:0|0.5|0.2|1|0.25|0.4|5|0|435; (*GB) gi|255570075|ref|XP_002526000.1| (e_value=3e-113) cleavage and polyadenylation specificity factor, putative [Ricinus communis];; (*SWP) sp|Q8GUU2|RIE1_ARATH (e_value=9e-95) E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1;; (*TAIR) AT1G68070.1 (e_value=7e-111) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:25515412-25516767 REVERSE LENGTH=343;; (*ITAG) Solyc04g008020.2.1 (e_value=6e-147) genomic_reference:SL2.40ch04 gene_region:1674930-1680865 transcript_region:SL2.40ch04:1674930..1680865- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00002534g0003.1 protein AED:0.13 eAED:0.14 QI:0|1|0|1|0|0.5|2|0|267; (*GB) gi|356499538|ref|XP_003518596.1| (e_value=4e-110) PREDICTED: trans-2,3-enoyl-CoA reductase-like [Glycine max];; (*SWP) sp|Q28891|S5A1_MACFA (e_value=3e-22) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1;; (*TAIR) AT5G16010.1 (e_value=2e-91) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr5:5227982-5229012 FORWARD LENGTH=268;; (*ITAG) Solyc11g006290.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1022215-1023710 transcript_region:SL2.40ch11:1022215..1023710- go_terms:GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 ***- D7M7I5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016021 NbS00016545g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|321; (*GB) gi|40287448|gb|AAR83909.1| (e_value=1e-168) heavy metal transporter MTP2 [Arabidopsis lyrata];; (*SWP) sp|Q9LXS1|MTPA2_ARATH (e_value=6e-156) Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=2;; (*TAIR) AT3G58810.1 (e_value=1e-156) | Symbols: MTPA2, ATMTPA2, MTP3, ATMTP3 | metal tolerance protein A2 | chr3:21750551-21751849 FORWARD LENGTH=432;; (*ITAG) Solyc07g007060.1.1 (e_value=1e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1836680-1837810 transcript_region:SL2.40ch07:1836680..1837810- go_terms:GO:0015633 functional_description:"Zinc transporter (AHRD V1 **** Q947R8_EUCGR); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0015633 NbS00001012g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|63|279; (*GB) gi|71370257|gb|AAZ30376.1| (e_value=3e-175) PHB1 [Nicotiana benthamiana];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=2e-91) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=2e-149) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc11g010190.1.1 (e_value=3e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3269915-3270754 transcript_region:SL2.40ch11:3269915..3270754+ go_terms:GO:0016020 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00001012g0002.1 protein AED:0.33 eAED:0.33 QI:24|1|1|1|0.5|0.4|5|251|186; (*GB) gi|224094965|ref|XP_002310307.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1D6|RBK1_ARATH (e_value=3e-75) Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1;; (*TAIR) AT5G65530.1 (e_value=2e-77) | Symbols: | Protein kinase superfamily protein | chr5:26190844-26192826 REVERSE LENGTH=456;; (*ITAG) Solyc11g010730.1.1 (e_value=5e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3769620-3777208 transcript_region:SL2.40ch11:3769620..3777208- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001012g0014.1 protein AED:0.38 eAED:0.38 QI:264|0.5|0.33|1|0.5|0.33|3|0|114 NbS00001012g0012.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|359497501|ref|XP_003635542.1| (e_value=2e-64) PREDICTED: uncharacterized protein LOC100854495 [Vitis vinifera];; (*TAIR) AT5G65520.1 (e_value=2e-46) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26189876-26190496 REVERSE LENGTH=206;; (*ITAG) Solyc11g010720.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3767979-3768617 transcript_region:SL2.40ch11:3767979..3768617- go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 5 TAC clone K21L13 (AHRD V1 **-- Q9LSM3_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00035694g0004.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|101; (*ITAG) Solyc01g056950.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00021746g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|2|167|154; (*GB) gi|82623367|gb|ABB87098.1| (e_value=3e-59) hypothetical protein [Solanum tuberosum];; (*TAIR) AT2G27830.1 (e_value=1e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc06g074620.2.1 (e_value=9e-72) genomic_reference:SL2.40ch06 gene_region:42542857-42544018 transcript_region:SL2.40ch06:42542857..42544018+ functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 *--- Q0E1G8_ORYSJ)"; NbS00021746g0010.1 protein AED:0.30 eAED:0.31 QI:0|0.25|0|1|0.25|0.4|5|0|296; (*GB) gi|386870479|gb|AFJ42570.1| (e_value=0.0) beta-actin [Sesamum indicum];; (*SWP) sp|P93375|ACT7_TOBAC (e_value=0.0) Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00021746g0006.1 protein AED:0.80 eAED:1.00 QI:0|0|0|1|1|1|2|0|63 NbC25308622g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|1|0|0|3|0|87; (*GB) gi|296089901|emb|CBI39720.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M4A2|SPO11_ARATH (e_value=5e-35) Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1;; (*TAIR) AT3G13170.1 (e_value=3e-36) | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, subunit A protein | chr3:4231560-4234192 REVERSE LENGTH=362;; (*ITAG) Solyc07g065430.2.1 (e_value=2e-26) genomic_reference:SL2.40ch07 gene_region:64411861-64416712 transcript_region:SL2.40ch07:64411861..64416712- go_terms:GO:0030001,GO:0005694 functional_description:"DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI); contains Interpro domain(s) IPR013048 Meiotic recombination Spo11 "; GO:0030001,GO:0005694 NbS00006084g0005.1 protein AED:0.23 eAED:0.23 QI:250|0.9|0.90|1|0.8|0.81|11|394|428; (*GB) gi|225460698|ref|XP_002270464.1| (e_value=0.0) PREDICTED: exosome complex component rrp45-like [Vitis vinifera];; (*SWP) sp|Q4QR75|EXOS9_RAT (e_value=1e-68) Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1;; (*TAIR) AT3G60500.3 (e_value=3e-164) | Symbols: CER7 | 3'-5'-exoribonuclease family protein | chr3:22354245-22356440 FORWARD LENGTH=438;; (*ITAG) Solyc05g047420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58012355-58023466 transcript_region:SL2.40ch05:58012355..58023466+ go_terms:GO:0005515,GO:0000175 functional_description:"Exosome complex exonuclease RRP45 (AHRD V1 **-- C1BLN8_OSMMO); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 "; GO:0005515,GO:0000175 NbS00020015g0003.1 protein AED:0.41 eAED:0.41 QI:288|0.5|0.33|1|1|1|3|0|109; (*GB) gi|356566511|ref|XP_003551474.1| (e_value=3e-30) PREDICTED: uncharacterized protein LOC100797030 [Glycine max];; (*TAIR) AT1G24310.1 (e_value=4e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). | chr1:8624192-8626179 FORWARD LENGTH=377;; (*ITAG) Solyc12g035650.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:28332415-28346134 transcript_region:SL2.40ch12:28332415..28346134- functional_description:"Nucleoporin p54 (AHRD V1 *-*- B5X399_SALSA)"; NbS00010892g0009.1 protein AED:0.29 eAED:0.32 QI:36|0.66|0.42|1|0.5|0.42|7|202|289; (*GB) gi|5902454|dbj|BAA84468.1| (e_value=1e-79) RNase NGR2 [Nicotiana glutinosa];; (*SWP) sp|P42814|RNS2_ARATH (e_value=3e-62) Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1;; (*TAIR) AT2G39780.1 (e_value=3e-63) | Symbols: RNS2 | ribonuclease 2 | chr2:16591256-16593515 FORWARD LENGTH=259;; (*ITAG) Solyc06g082890.2.1 (e_value=2e-110) genomic_reference:SL2.40ch06 gene_region:44812779-44819899 transcript_region:SL2.40ch06:44812779..44819899- go_terms:GO:0004521 functional_description:"S-like RNase (Fragment) (AHRD V1 ***- D8TKF1_VOLCA); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00010892g0013.1 protein AED:0.27 eAED:0.35 QI:358|0|0.5|1|0|0|2|0|76 NbS00010892g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|710; (*GB) gi|359488315|ref|XP_002278668.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g02330-like [Vitis vinifera];; (*SWP) sp|Q9FWA6|PP207_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2;; (*TAIR) AT3G02330.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:473881-476592 REVERSE LENGTH=903;; (*ITAG) Solyc06g082880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44809502-44812335 transcript_region:SL2.40ch06:44809502..44812335+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010892g0008.1 protein AED:0.13 eAED:0.13 QI:75|1|1|1|1|1|9|367|302; (*GB) gi|77999273|gb|ABB16983.1| (e_value=7e-175) unknown [Solanum tuberosum];; (*SWP) sp|Q6UNT2|RL5_CUCSA (e_value=4e-161) 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1;; (*TAIR) AT5G39740.2 (e_value=6e-158) | Symbols: RPL5B | ribosomal protein L5 B | chr5:15903484-15905185 FORWARD LENGTH=301;; (*ITAG) Solyc06g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44805209-44808923 transcript_region:SL2.40ch06:44805209..44808923+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic "; GO:0005840 NbS00014742g0006.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|224; (*GB) gi|224073620|ref|XP_002304121.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72490.1 (e_value=7e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc07g042100.2.1 (e_value=1e-75) genomic_reference:SL2.40ch07 gene_region:52404554-52405939 transcript_region:SL2.40ch07:52404554..52405939+ functional_description:"F1L3.5 (AHRD V1 ***- Q9LNR9_ARATH)"; NbS00014742g0005.1 protein AED:0.11 eAED:0.15 QI:397|0.75|0.77|1|0.75|0.66|9|417|347; (*GB) gi|255550403|ref|XP_002516252.1| (e_value=2e-116) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q75JN3|T1842_DICDI (e_value=3e-15) Transmembrane protein 184 homolog DDB_G0276041 OS=Dictyostelium discoideum GN=tmem184B PE=3 SV=1;; (*TAIR) AT1G23070.1 (e_value=4e-100) | Symbols: | Protein of unknown function (DUF300) | chr1:8174011-8175758 REVERSE LENGTH=403;; (*ITAG) Solyc07g042090.2.1 (e_value=2e-158) genomic_reference:SL2.40ch07 gene_region:52343130-52347249 transcript_region:SL2.40ch07:52343130..52347249- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A9UM61_XENTR); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00014742g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|75 NbS00001274g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|446; (*GB) gi|225460462|ref|XP_002267095.1| (e_value=0.0) PREDICTED: MATE efflux family protein 9-like [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=2e-40) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G71870.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr1:27032456-27034895 REVERSE LENGTH=510;; (*ITAG) Solyc11g016970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7624890-7627907 transcript_region:SL2.40ch11:7624890..7627907+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00001231g0011.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|136; (*GB) gi|388503528|gb|AFK39830.1| (e_value=4e-58) unknown [Lotus japonicus];; (*SWP) sp|P56331|IF1A_ONOVI (e_value=5e-58) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=4e-59) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc05g050200.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:59394632-59396589 transcript_region:SL2.40ch05:59394632..59396589+ go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743 NbS00001231g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|0.8|0.75|0.6|5|0|459; (*GB) gi|229368448|gb|ACQ59090.1| (e_value=0.0) BTB/POZ protein [Nicotiana benthamiana];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=0.0) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.2 (e_value=0.0) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22798069 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00007419g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.33|3|509|535; (*GB) gi|225451428|ref|XP_002273749.1| (e_value=0.0) PREDICTED: SWI/SNF complex component SNF12 homolog [Vitis vinifera];; (*SWP) sp|Q9FMT4|SNF12_ARATH (e_value=0.0) SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1;; (*TAIR) AT5G14170.1 (e_value=0.0) | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein | chr5:4568696-4570444 REVERSE LENGTH=534;; (*ITAG) Solyc02g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32726479-32729519 transcript_region:SL2.40ch02:32726479..32729519+ go_terms:GO:0003713 functional_description:"SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily d member 1 (AHRD V1 ***- Q802C8_DANRE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0003713 NbS00007419g0017.1 protein AED:0.23 eAED:0.23 QI:268|1|0.5|1|0.6|0.5|6|593|111; (*GB) gi|296082348|emb|CBI21353.3| (e_value=3e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JIX0|ENY2_MOUSE (e_value=3e-27) Enhancer of yellow 2 transcription factor homolog OS=Mus musculus GN=Eny2 PE=2 SV=1;; (*TAIR) AT3G27100.1 (e_value=3e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:9994743-9995923 REVERSE LENGTH=115;; (*ITAG) Solyc02g068110.2.1 (e_value=8e-39) genomic_reference:SL2.40ch02 gene_region:32730904-32734592 transcript_region:SL2.40ch02:32730904..32734592+ go_terms:GO:0030374 functional_description:"Enhancer of yellow 2 transcription factor homolog (AHRD V1 **** C1BWN3_ESOLU); contains Interpro domain(s) IPR018783 Transcription factor, enhancer of yellow 2 "; GO:0030374 NbS00007419g0007.1 protein AED:0.01 eAED:0.01 QI:1766|1|1|1|1|1|2|265|415; (*GB) gi|225451469|ref|XP_002270737.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera];; (*TAIR) AT3G01930.1 (e_value=3e-178) | Symbols: | Major facilitator superfamily protein | chr3:319289-320777 REVERSE LENGTH=471;; (*ITAG) Solyc02g094190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00007419g0018.1 protein AED:0.20 eAED:0.20 QI:205|0.75|0.8|1|0.25|0.2|5|490|260; (*GB) gi|77999240|gb|ABB16967.1| (e_value=2e-125) unknown [Solanum tuberosum];; (*SWP) sp|P37707|B2_DAUCA (e_value=5e-58) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G27090.1 (e_value=1e-102) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:9990020-9991407 FORWARD LENGTH=296;; (*ITAG) Solyc02g068120.2.1 (e_value=3e-131) genomic_reference:SL2.40ch02 gene_region:32736345-32741058 transcript_region:SL2.40ch02:32736345..32741058- functional_description:"Gda-1 (AHRD V1 **-- B6TDG4_MAIZE); contains Interpro domain(s) IPR013089 Kelch related "; NbS00007419g0014.1 protein AED:0.25 eAED:0.25 QI:161|1|1|1|0.6|0.66|6|124|202; (*GB) gi|13631844|sp|P92792.1|TOM20_SOLTU (e_value=6e-111) RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit;; (*SWP) sp|P92792|TOM20_SOLTU (e_value=2e-112) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=5e-79) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g068130.2.1 (e_value=8e-113) genomic_reference:SL2.40ch02 gene_region:32744250-32750308 transcript_region:SL2.40ch02:32744250..32750308+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00040616g0003.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|676; (*GB) gi|225426858|ref|XP_002276880.1| (e_value=0.0) PREDICTED: scarecrow-like protein 28 [Vitis vinifera];; (*SWP) sp|Q9CAN3|SCL28_ARATH (e_value=0.0) Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1;; (*TAIR) AT1G63100.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr1:23399391-23401367 REVERSE LENGTH=658;; (*ITAG) Solyc08g080400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60850338-60852377 transcript_region:SL2.40ch08:60850338..60852377- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 *--* B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00040616g0010.1 protein AED:0.23 eAED:0.23 QI:231|1|1|1|0.9|0.90|11|474|601; (*GB) gi|225426846|ref|XP_002276758.1| (e_value=5e-178) PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera];; (*TAIR) AT4G11740.1 (e_value=1e-126) | Symbols: SAY1 | Ubiquitin-like superfamily protein | chr4:7071955-7075256 FORWARD LENGTH=564;; (*ITAG) Solyc08g080410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60862050-60868830 transcript_region:SL2.40ch08:60862050..60868830- functional_description:"UBX domain-containing protein (AHRD V1 ***- D7MDX6_ARALY); contains Interpro domain(s) IPR001012 UBX "; NbS00040616g0011.1 protein AED:0.18 eAED:0.18 QI:0|1|0.92|1|0.76|0.85|14|476|413; (*GB) gi|356565293|ref|XP_003550876.1| (e_value=5e-165) PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Glycine max];; (*TAIR) AT1G63110.1 (e_value=2e-156) | Symbols: | GPI transamidase subunit PIG-U | chr1:23404870-23407757 FORWARD LENGTH=469;; (*ITAG) Solyc08g080420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60871159-60878126 transcript_region:SL2.40ch08:60871159..60878126+ go_terms:GO:0003923,GO:0034235 functional_description:"GPI-anchor transamidase component (AHRD V1 *--* Q6KCB9_9SACH); contains Interpro domain(s) IPR009600 GPI transamidase subunit PIG-U "; GO:0003923,GO:0034235 NbS00040616g0004.1 protein AED:0.31 eAED:0.52 QI:51|-1|0|1|-1|1|1|0|43 NbS00040616g0006.1 protein AED:0.44 eAED:0.70 QI:0|0|0|1|1|1|2|0|77 NbS00028040g0026.1 protein AED:0.48 eAED:0.50 QI:0|0.11|0|0.5|0.66|0.6|10|0|579; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-20) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=5e-41) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00028040g0029.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.66|1|1|1|3|577|353; (*GB) gi|297746417|emb|CBI16473.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54453|YQEH_BACSU (e_value=2e-24) Uncharacterized protein yqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1;; (*TAIR) AT4G10620.1 (e_value=3e-171) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:6564297-6566402 FORWARD LENGTH=597;; (*ITAG) Solyc01g006180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:813047-818684 transcript_region:SL2.40ch01:813047..818684- go_terms:GO:0003924 functional_description:"GTP-binding protein-like (AHRD V1 ***- Q69NK1_ORYSJ)"; GO:0003924 NbS00028040g0022.1 protein AED:0.23 eAED:0.23 QI:319|1|0.75|1|0.66|0.5|4|130|116 NbS00028040g0027.1 protein AED:0.23 eAED:0.24 QI:0|0.66|0.71|1|0.66|0.71|7|372|360; (*GB) gi|297242519|gb|ADI24923.1| (e_value=1e-178) metal tolerance protein [Carica papaya];; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=4e-174) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=1e-157) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc01g006150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:797548-802155 transcript_region:SL2.40ch01:797548..802155- go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 ***- FIEF_KLEPN); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00028040g0030.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|0.5|0.66|3|584|308; (*GB) gi|225435638|ref|XP_002285659.1| (e_value=9e-175) PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera];; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=5e-162) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1;; (*TAIR) AT3G58040.1 (e_value=4e-163) | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308;; (*ITAG) Solyc01g006190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00043004g0001.1 protein AED:0.08 eAED:0.13 QI:0|0|0|1|0|0|2|0|157; (*ITAG) Solyc05g039970.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00019088g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.61|0.84|0.66|0.69|13|0|690; (*GB) gi|359479162|ref|XP_002268336.2| (e_value=0.0) PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera];; (*SWP) sp|Q9ZPV5|NOC2L_ARATH (e_value=0.0) Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2;; (*TAIR) AT2G18220.1 (e_value=0.0) | Symbols: | Noc2p family | chr2:7928254-7931851 FORWARD LENGTH=764;; (*ITAG) Solyc02g081680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40122531-40127925 transcript_region:SL2.40ch02:40122531..40127925- go_terms:GO:0042802 functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; GO:0042802 NbS00014065g0003.1 protein AED:0.07 eAED:0.07 QI:62|1|1|1|1|0.66|3|342|1131; (*GB) gi|297738260|emb|CBI27461.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G19870.1 (e_value=0.0) | Symbols: | unknown protein; Has 84 Blast hits to 64 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | chr3:6907481-6911115 FORWARD LENGTH=1090;; (*ITAG) Solyc10g079850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60649525-60653764 transcript_region:SL2.40ch10:60649525..60653764- functional_description:"Genomic DNA chromosome 3 P1 clone MPN9 (AHRD V1 ***- Q9LT22_ARATH)"; NbS00011498g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|149; (*GB) gi|157142955|gb|ABV24460.1| (e_value=2e-69) chloroplast-localized protein [Nicotiana benthamiana];; (*SWP) sp|Q7XAB8|THF1_SOLTU (e_value=1e-64) Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1;; (*TAIR) AT2G20890.1 (e_value=1e-54) | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300;; (*ITAG) Solyc07g054820.2.1 (e_value=4e-66) genomic_reference:SL2.40ch07 gene_region:60318652-60325343 transcript_region:SL2.40ch07:60318652..60325343+ go_terms:GO:0005515 functional_description:"Protein thf1 (AHRD V1 ***- A0YRG1_LYNSP)"; GO:0005515 NbS00011498g0008.1 protein AED:0.44 eAED:0.47 QI:0|0.66|0.5|1|1|0.75|4|0|146; (*GB) gi|157142955|gb|ABV24460.1| (e_value=2e-76) chloroplast-localized protein [Nicotiana benthamiana];; (*SWP) sp|Q7XAB8|THF1_SOLTU (e_value=8e-74) Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1;; (*TAIR) AT2G20890.1 (e_value=3e-56) | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300;; (*ITAG) Solyc07g054820.2.1 (e_value=6e-45) genomic_reference:SL2.40ch07 gene_region:60318652-60325343 transcript_region:SL2.40ch07:60318652..60325343+ go_terms:GO:0005515 functional_description:"Protein thf1 (AHRD V1 ***- A0YRG1_LYNSP)"; GO:0005515 NbS00024003g0008.1 protein AED:0.12 eAED:0.13 QI:105|0.77|0.7|1|0.88|0.9|10|0|569; (*GB) gi|224135115|ref|XP_002321987.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G53080.1 (e_value=2e-160) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21520624-21523158 FORWARD LENGTH=564;; (*ITAG) Solyc03g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46382484-46388093 transcript_region:SL2.40ch03:46382484..46388093+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat containing protein (AHRD V1 ***- D7FXH0_ECTSI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024003g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.87|1|1|1|8|371|673; (*GB) gi|356516077|ref|XP_003526723.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Glycine max];; (*SWP) sp|P58223|Y4837_ARATH (e_value=2e-21) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G53060.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:21515355-21518197 FORWARD LENGTH=652;; (*ITAG) Solyc03g082980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46373895-46380618 transcript_region:SL2.40ch03:46373895..46380618+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00047360g0008.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0|1|0.66|0.5|4|0|494; (*GB) gi|225425932|ref|XP_002267715.1| (e_value=4e-117) PREDICTED: GDSL esterase/lipase At3g48460-like [Vitis vinifera];; (*SWP) sp|Q9STM6|GDL57_ARATH (e_value=2e-76) GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana GN=At3g48460 PE=2 SV=1;; (*TAIR) AT3G48460.1 (e_value=2e-77) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:17949496-17951082 FORWARD LENGTH=381;; (*ITAG) Solyc05g014210.2.1 (e_value=6e-105) genomic_reference:SL2.40ch05 gene_region:7979323-7982470 transcript_region:SL2.40ch05:7979323..7982470+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At3g48460 (AHRD V1 *-*- GDL57_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00047360g0007.1 protein AED:0.07 eAED:0.11 QI:42|1|1|1|1|0.75|4|148|209; (*GB) gi|224107701|ref|XP_002314569.1| (e_value=7e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13195.1 (e_value=3e-99) | Symbols: | RING/U-box superfamily protein | chr1:4501778-4503347 REVERSE LENGTH=260;; (*ITAG) Solyc05g014230.2.1 (e_value=8e-147) genomic_reference:SL2.40ch05 gene_region:7983463-7985594 transcript_region:SL2.40ch05:7983463..7985594- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00017996g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.6|1|1|1|5|0|130; (*GB) gi|387940594|gb|AFK13160.1| (e_value=1e-69) shatterproof [Nicotiana benthamiana];; (*SWP) sp|P29381|AGL1_ARATH (e_value=2e-47) Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1;; (*TAIR) AT3G58780.1 (e_value=2e-48) | Symbols: SHP1, AGL1 | K-box region and MADS-box transcription factor family protein | chr3:21739150-21741766 FORWARD LENGTH=248;; (*ITAG) Solyc07g055920.2.1 (e_value=6e-68) genomic_reference:SL2.40ch07 gene_region:61164844-61174720 transcript_region:SL2.40ch07:61164844..61174720+ go_terms:GO:0005515 functional_description:"Agamous MADS-box transcription factor (AHRD V1 **-- B2CDE2_9ASPA); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00017996g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|387940594|gb|AFK13160.1| (e_value=4e-38) shatterproof [Nicotiana benthamiana];; (*SWP) sp|Q43585|AG_TOBAC (e_value=2e-38) Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1;; (*TAIR) AT4G18960.1 (e_value=3e-39) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252;; (*ITAG) Solyc02g071730.2.1 (e_value=8e-39) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00035847g0001.1 protein AED:0.22 eAED:0.37 QI:0|1|0.5|1|0|0|2|1826|634; (*GB) gi|255581071|ref|XP_002531351.1| (e_value=1e-152) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7R7|Y3903_ARATH (e_value=5e-130) BTB/POZ domain-containing protein At3g09030 OS=Arabidopsis thaliana GN=At3g09030 PE=2 SV=1;; (*TAIR) AT3G09030.1 (e_value=4e-131) | Symbols: | BTB/POZ domain-containing protein | chr3:2754841-2756223 FORWARD LENGTH=460;; (*ITAG) Solyc08g081230.1.1 (e_value=3e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61456635-61458026 transcript_region:SL2.40ch08:61456635..61458026- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7MIW8_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00051699g0004.1 protein AED:0.38 eAED:0.38 QI:47|0.63|0.75|1|1|1|12|287|394; (*GB) gi|225453122|ref|XP_002272712.1| (e_value=1e-177) PREDICTED: uncharacterized protein C20orf4 homolog [Vitis vinifera];; (*SWP) sp|Q08DJ7|CT004_BOVIN (e_value=2e-43) Uncharacterized protein C20orf4 homolog OS=Bos taurus PE=2 SV=1;; (*TAIR) AT1G66510.2 (e_value=7e-155) | Symbols: | AAR2 protein family | chr1:24812881-24815804 FORWARD LENGTH=399;; (*ITAG) Solyc02g091330.2.1 (e_value=3e-160) genomic_reference:SL2.40ch02 gene_region:47231747-47240486 transcript_region:SL2.40ch02:47231747..47240486- go_terms:GO:0005515 functional_description:"C20orf4 homolog (AHRD V1 **-- C0H960_SALSA); contains Interpro domain(s) IPR007946 AAR2 "; GO:0005515 NbS00023193g0008.1 protein AED:0.06 eAED:0.06 QI:464|1|1|1|0.87|0.88|9|642|200; (*GB) gi|3122941|sp|P93348.1|TBP_TOBAC (e_value=8e-146) RecName: Full=TATA-box-binding protein; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=TATA-binding factor; AltName: Full=TATA-box factor; AltName: Full=Transcription initiation factor TFIID TBP subunit;; (*SWP) sp|P93348|TBP_TOBAC (e_value=2e-147) TATA-box-binding protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55520.2 (e_value=9e-137) | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | chr1:20726150-20727483 REVERSE LENGTH=200;; (*ITAG) Solyc01g028930.2.1 (e_value=7e-144) genomic_reference:SL2.40ch01 gene_region:34805699-34816768 transcript_region:SL2.40ch01:34805699..34816768+ go_terms:GO:0003713 functional_description:"TATA-box binding protein (AHRD V1 ***- Q9ZTX5_PHAVU); contains Interpro domain(s) IPR000814 TATA-box binding "; GO:0003713 NbS00031892g0004.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|201; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-28) hypothetical protein [Nicotiana tabacum]; NbS00054126g0009.1 protein AED:0.34 eAED:0.36 QI:0|0.8|0.66|1|0.6|0.83|6|0|511; (*GB) gi|255551669|ref|XP_002516880.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=0.0) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G18610.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:6192736-6195371 FORWARD LENGTH=513;; (*ITAG) Solyc01g067400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68270103-68279664 transcript_region:SL2.40ch01:68270103..68279664- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00054126g0008.1 protein AED:0.07 eAED:0.07 QI:135|0.95|0.96|1|0.91|1|25|358|1063; (*GB) gi|255551667|ref|XP_002516879.1| (e_value=0.0) helicase, putative [Ricinus communis];; (*SWP) sp|Q8RWY3|ISW2_ARATH (e_value=0.0) Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3;; (*TAIR) AT3G06400.2 (e_value=0.0) | Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1056;; (*ITAG) Solyc01g067390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68257411-68268333 transcript_region:SL2.40ch01:68257411..68268333+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00000806g0010.1 protein AED:0.23 eAED:0.23 QI:227|0.74|0.67|1|0.92|0.92|28|0|1037; (*GB) gi|75252690|sp|Q5YLB5.1|GYRA_NICBE (e_value=0.0) RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB5|GYRA_NICBE (e_value=0.0) DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1;; (*TAIR) AT3G10690.1 (e_value=0.0) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950;; (*ITAG) Solyc01g096900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79648895-79670117 transcript_region:SL2.40ch01:79648895..79670117+ go_terms:GO:0005694 functional_description:"DNA gyrase subunit A family protein (AHRD V1 ***- D7L923_ARALY); contains Interpro domain(s) IPR005743 DNA gyrase, subunit A "; GO:0005694 NbS00000806g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.88|1|0.87|0.88|9|541|340; (*GB) gi|255554859|ref|XP_002518467.1| (e_value=6e-171) Vacuolar protein sorting protein, putative [Ricinus communis];; (*SWP) sp|Q9FF81|VPS36_ARATH (e_value=5e-156) Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1;; (*TAIR) AT5G04920.1 (e_value=4e-157) | Symbols: | EAP30/Vps36 family protein | chr5:1439172-1441545 REVERSE LENGTH=440;; (*ITAG) Solyc01g096910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79670794-79679628 transcript_region:SL2.40ch01:79670794..79679628- go_terms:GO:0003730,GO:0043130 functional_description:"Vacuolar protein sorting 36 family protein (AHRD V1 ***- D7LY74_ARALY); contains Interpro domain(s) IPR007286 EAP30 "; GO:0003730,GO:0043130 NbS00052175g0002.1 protein AED:0.22 eAED:0.80 QI:58|0|0|1|0|0|2|53|57 NbS00051980g0001.1 protein AED:0.25 eAED:0.39 QI:0|0|0|1|0|0|3|0|188; (*GB) gi|224128542|ref|XP_002320358.1| (e_value=5e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA69|Y1301_ARATH (e_value=3e-70) BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1;; (*TAIR) AT1G03010.1 (e_value=3e-71) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634;; (*ITAG) Solyc09g074630.2.1 (e_value=4e-79) genomic_reference:SL2.40ch09 gene_region:61949651-61951803 transcript_region:SL2.40ch09:61949651..61951803+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KCA4_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00017072g0001.1 protein AED:0.04 eAED:0.04 QI:468|1|0.8|1|0.25|0.2|5|862|171; (*GB) gi|224054548|ref|XP_002298315.1| (e_value=7e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56Y11|DDPS2_ARATH (e_value=9e-76) Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2;; (*TAIR) AT5G58770.1 (e_value=7e-77) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr5:23734396-23735495 FORWARD LENGTH=310;; (*ITAG) Solyc10g085150.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63759473-63761440 transcript_region:SL2.40ch10:63759473..63761440- go_terms:GO:0016765 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 ***- D8G636_9CYAN); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0016765 NbS00017072g0006.1 protein AED:0.47 eAED:0.71 QI:0|0.25|0|0.6|0|0.2|5|0|166; (*GB) gi|224090998|ref|XP_002309139.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01470.1 (e_value=3e-31) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:190953-192462 FORWARD LENGTH=241;; (*ITAG) Solyc10g085160.1.1 (e_value=6e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63762021-63765608 transcript_region:SL2.40ch10:63762021..63765608- functional_description:"UPF0563 protein C17orf95 homolog (AHRD V1 *--- CQ095_XENLA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00003160g0002.1 protein AED:0.22 eAED:0.22 QI:487|0.5|0.42|1|1|1|7|0|546; (*GB) gi|255545748|ref|XP_002513934.1| (e_value=0.0) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q3EC77|PMT5_ARATH (e_value=2e-116) Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2;; (*TAIR) AT2G03480.2 (e_value=1e-117) | Symbols: QUL2 | QUASIMODO2 LIKE 2 | chr2:1051509-1054090 FORWARD LENGTH=595;; (*ITAG) Solyc04g005430.2.1 (e_value=2e-153) genomic_reference:SL2.40ch04 gene_region:296800-302613 transcript_region:SL2.40ch04:296800..302613- go_terms:GO:0016020 functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00000994g0005.1 protein AED:0.13 eAED:0.15 QI:0|1|0|1|1|1|2|0|530; (*GB) gi|225431601|ref|XP_002276933.1| (e_value=3e-128) PREDICTED: trihelix transcription factor GT-2 [Vitis vinifera];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=4e-57) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76890.2 (e_value=3e-58) | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like superfamily protein | chr1:28873211-28875203 REVERSE LENGTH=575;; (*ITAG) Solyc11g005380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:304294-305925 transcript_region:SL2.40ch11:304294..305925+ go_terms:GO:0003677 functional_description:"GT-2 factor (Fragment) (AHRD V1 *--- Q8W240_SOYBN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00000994g0105.1 protein AED:0.32 eAED:0.32 QI:33|0.5|0.33|0.66|1|1|3|0|89 NbS00008411g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|131; (*GB) gi|224141873|ref|XP_002324285.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15650.1 (e_value=4e-26) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:5306006-5307764 FORWARD LENGTH=255;; (*ITAG) Solyc08g067160.2.1 (e_value=4e-39) genomic_reference:SL2.40ch08 gene_region:53325912-53329825 transcript_region:SL2.40ch08:53325912..53329825+ go_terms:GO:0008474,GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0008474,GO:0004622 NbS00016416g0007.1 protein AED:0.11 eAED:0.11 QI:13|0.91|0.92|1|0.91|0.92|13|274|452; (*GB) gi|225430908|ref|XP_002276691.1| (e_value=4e-170) PREDICTED: putative RNA-binding protein Luc7-like 2 [Vitis vinifera];; (*SWP) sp|Q9NQ29|LUC7L_HUMAN (e_value=4e-21) Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1;; (*TAIR) AT5G17440.1 (e_value=6e-160) | Symbols: | LUC7 related protein | chr5:5749849-5753415 FORWARD LENGTH=404;; (*ITAG) Solyc05g056280.2.1 (e_value=2e-176) genomic_reference:SL2.40ch05 gene_region:64772180-64781152 transcript_region:SL2.40ch05:64772180..64781152+ go_terms:GO:0003729 functional_description:"RNA-binding protein Luc7-like 2 (AHRD V1 **** B6TXA2_MAIZE); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0003729 NbS00016416g0002.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|255545216|ref|XP_002513669.1| (e_value=2e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G23950.1 (e_value=6e-46) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:8082789-8083448 FORWARD LENGTH=219;; (*ITAG) Solyc06g036110.1.1 (e_value=2e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:22246752-22247498 transcript_region:SL2.40ch06:22246752..22247498+ functional_description:"C2 domain-containing protein (AHRD V1 *--- Q5DVL6_HORVD); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00004105g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|702; (*GB) gi|255559253|ref|XP_002520647.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|O54922|EXOC7_RAT (e_value=6e-22) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G13990.1 (e_value=0.0) | Symbols: ATEXO70C2, EXO70C2 | exocyst subunit exo70 family protein C2 | chr5:4514680-4516767 REVERSE LENGTH=695;; (*ITAG) Solyc02g094370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49496509-49498653 transcript_region:SL2.40ch02:49496509..49498653- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00004105g0001.1 protein AED:0.06 eAED:0.06 QI:200|1|1|1|0.25|0.6|5|219|447; (*GB) gi|255547614|ref|XP_002514864.1| (e_value=4e-161) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-152) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G13160.1 (e_value=2e-153) | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176854-4179682 FORWARD LENGTH=456;; (*ITAG) Solyc02g094380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49499332-49501925 transcript_region:SL2.40ch02:49499332..49501925+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00014384g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|118; (*GB) gi|27529848|dbj|BAC53939.1| (e_value=2e-51) MCM protein-like protein [Nicotiana tabacum];; (*TAIR) AT1G44900.2 (e_value=5e-23) | Symbols: MCM2 | minichromosome maintenance (MCM2/3/5) family protein | chr1:16970291-16974457 FORWARD LENGTH=934;; (*ITAG) Solyc11g040120.1.1 (e_value=9e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28583677-28588706 transcript_region:SL2.40ch11:28583677..28588706+ go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q8JGR5_DANRE); contains Interpro domain(s) IPR008045 MCM protein 2 "; GO:0005515 NbS00001923g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|543; (*GB) gi|225447824|ref|XP_002268032.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Vitis vinifera];; (*SWP) sp|Q9SJN2|PP187_ARATH (e_value=2e-165) Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1;; (*TAIR) AT2G36240.1 (e_value=2e-166) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:15195663-15197156 FORWARD LENGTH=497;; (*ITAG) Solyc08g006170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:885938-887362 transcript_region:SL2.40ch08:885938..887362+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001923g0008.1 protein AED:0.24 eAED:0.24 QI:78|0.75|0.8|1|0.25|0.4|5|0|250; (*GB) gi|255548626|ref|XP_002515369.1| (e_value=1e-29) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|P0DH85|REM10_ARATH (e_value=1e-24) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=8e-26) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc08g006220.2.1 (e_value=3e-62) genomic_reference:SL2.40ch08 gene_region:912609-915803 transcript_region:SL2.40ch08:912609..915803+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00001923g0009.1 protein AED:0.08 eAED:0.08 QI:352|1|1|1|0.5|0.66|3|536|205; (*GB) gi|255548626|ref|XP_002515369.1| (e_value=1e-23) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|O23076|REM15_ARATH (e_value=1e-17) Putative B3 domain-containing protein REM15 OS=Arabidopsis thaliana GN=REM15.15 PE=2 SV=2;; (*TAIR) AT4G00260.1 (e_value=9e-19) | Symbols: MEE45 | Transcriptional factor B3 family protein | chr4:114971-117051 FORWARD LENGTH=528;; (*ITAG) Solyc08g006240.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00001923g0015.1 protein AED:0.21 eAED:0.47 QI:0|0|0|1|0|0|3|0|384; (*GB) gi|147795390|emb|CAN67605.1| (e_value=8e-94) hypothetical protein VITISV_030993 [Vitis vinifera];; (*SWP) sp|Q3EA00|FB235_ARATH (e_value=2e-16) Putative F-box protein At4g17565 OS=Arabidopsis thaliana GN=At4g17565 PE=4 SV=1;; (*TAIR) AT3G25750.1 (e_value=3e-18) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr3:9400955-9402088 FORWARD LENGTH=348;; (*ITAG) Solyc08g006180.2.1 (e_value=2e-136) genomic_reference:SL2.40ch08 gene_region:891601-893321 transcript_region:SL2.40ch08:891601..893321+ functional_description:"F-box family protein (AHRD V1 ***- D7MV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00025873g0006.1 protein AED:0.15 eAED:0.17 QI:0|0.81|0.66|1|0.81|0.83|12|0|1488; (*GB) gi|297737268|emb|CBI26469.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16680.1 (e_value=9e-108) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:5467534-5472956 REVERSE LENGTH=1311;; (*ITAG) Solyc03g097260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53001328-53011523 transcript_region:SL2.40ch03:53001328..53011523- go_terms:GO:0003677 functional_description:"Bromodomain adjacent to zinc finger domain protein 1A (AHRD V1 *-*- BAZ1A_HUMAN); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003677 NbS00039266g0001.1 protein AED:0.07 eAED:0.07 QI:214|0.91|0.84|1|0.91|0.92|13|0|459; (*GB) gi|81074221|gb|ABB55364.1| (e_value=0.0) aspartate aminotransferase-like [Solanum tuberosum];; (*SWP) sp|P46248|AAT5_ARATH (e_value=0.0) Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2;; (*TAIR) AT4G31990.2 (e_value=0.0) | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotransferase 5 | chr4:15471074-15473521 REVERSE LENGTH=453;; (*ITAG) Solyc08g041870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27494734-27500528 transcript_region:SL2.40ch08:27494734..27500528- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** Q2XTE6_SOLTU); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00039266g0003.1 protein AED:0.27 eAED:0.27 QI:476|0.8|1|1|0.8|0.66|6|330|266; (*GB) gi|359475853|ref|XP_002285386.2| (e_value=5e-75) PREDICTED: probable receptor-like protein kinase At1g80640-like [Vitis vinifera];; (*SWP) sp|Q0V7T5|Y1864_ARATH (e_value=4e-48) Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1;; (*TAIR) AT4G32000.1 (e_value=2e-75) | Symbols: | Protein kinase superfamily protein | chr4:15474083-15476655 REVERSE LENGTH=418;; (*ITAG) Solyc04g045600.2.1 (e_value=1e-73) genomic_reference:SL2.40ch04 gene_region:33412352-33414560 transcript_region:SL2.40ch04:33412352..33414560- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00029925g0009.1 protein AED:0.45 eAED:0.72 QI:0|0|0|0.87|0|0.12|8|0|225; (*GB) gi|356538807|ref|XP_003537892.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100802747 [Glycine max];; (*TAIR) AT2G43190.2 (e_value=3e-28) | Symbols: | ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=295;; (*ITAG) Solyc09g007370.2.1 (e_value=4e-70) genomic_reference:SL2.40ch09 gene_region:965176-969869 transcript_region:SL2.40ch09:965176..969869- go_terms:GO:0005655,GO:0030677 functional_description:"Ribonuclease P protein subunit p29 (AHRD V1 *-*- C1BL44_OSMMO); contains Interpro domain(s) IPR016848 Ribonuclease P/MRP, p29 subunit, eukaryotic "; GO:0005655,GO:0030677 NbS00012623g0004.1 protein AED:0.08 eAED:0.08 QI:484|0.5|0.66|1|1|1|3|315|516; (*GB) gi|359485707|ref|XP_002281337.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Vitis vinifera];; (*SWP) sp|Q9C5J4|Y3210_ARATH (e_value=1e-129) BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1;; (*TAIR) AT3G22104.1 (e_value=9e-131) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:7789814-7792179 FORWARD LENGTH=506;; (*ITAG) Solyc07g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58708041-58710971 transcript_region:SL2.40ch07:58708041..58710971+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00028358g0003.1 protein AED:0.23 eAED:0.23 QI:77|1|1|1|1|1|2|146|142; (*GB) gi|350627694|gb|AEQ33640.1| (e_value=2e-59) histone H2A [Lycium barbarum];; (*SWP) sp|O65759|H2AX_CICAR (e_value=2e-57) Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1;; (*TAIR) AT1G54690.1 (e_value=2e-57) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142;; (*ITAG) Solyc09g082710.2.1 (e_value=6e-63) genomic_reference:SL2.40ch09 gene_region:63814378-63815336 transcript_region:SL2.40ch09:63814378..63815336- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- B9MZP0_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00010109g0005.1 protein AED:0.58 eAED:0.73 QI:20|0.5|0|1|1|0.66|3|40|65; (*GB) gi|302142195|emb|CBI19398.3| (e_value=1e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G59600.1 (e_value=2e-16) | Symbols: ZCW7 | ZCW7 | chr1:21889927-21891910 REVERSE LENGTH=324;; (*ITAG) Solyc04g077820.2.1 (e_value=7e-20) genomic_reference:SL2.40ch04 gene_region:60300380-60303647 transcript_region:SL2.40ch04:60300380..60303647- functional_description:"ZCW7 protein (AHRD V1 ***- Q9SLT8_ARATH)"; NbS00039793g0006.1 protein AED:0.35 eAED:0.38 QI:0|0|0|0.85|1|1|7|0|275; (*GB) gi|109289920|gb|ABG29323.1| (e_value=8e-105) Receptor protein kinase, putative [Solanum bulbocastanum];; (*SWP) sp|Q39086|SD17_ARATH (e_value=7e-62) Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1;; (*TAIR) AT1G65790.1 (e_value=5e-63) | Symbols: ARK1, RK1 | receptor kinase 1 | chr1:24468932-24472329 FORWARD LENGTH=843;; (*ITAG) Solyc08g076050.2.1 (e_value=3e-115) genomic_reference:SL2.40ch08 gene_region:57274800-57277925 transcript_region:SL2.40ch08:57274800..57277925+ go_terms:GO:0019199,GO:0004674 functional_description:"ARK3 product/receptor-like serine/threonine protein kinase ARK3 (AHRD V1 **** Q9S971_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00060596g0006.1 protein AED:0.12 eAED:0.12 QI:95|1|1|1|1|1|2|561|208; (*GB) gi|7547630|gb|AAB29959.2| (e_value=3e-113) pathogen- and wound-inducible antifungal protein CBP20 precursor [Nicotiana tabacum];; (*SWP) sp|P09762|WIN2_SOLTU (e_value=1e-101) Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1;; (*TAIR) AT3G04720.1 (e_value=9e-71) | Symbols: PR4, HEL, PR-4 | pathogenesis-related 4 | chr3:1285691-1286531 REVERSE LENGTH=212;; (*ITAG) Solyc01g097270.2.1 (e_value=2e-102) genomic_reference:SL2.40ch01 gene_region:79940651-79942014 transcript_region:SL2.40ch01:79940651..79942014- go_terms:GO:0005515 functional_description:"Chitinase (Fragment) (AHRD V1 *--- Q38777_ALLSA); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic IPR001153 Barwin "; GO:0005515 NbS00025917g0003.1 protein AED:0.06 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|384; (*GB) gi|359483861|ref|XP_002276730.2| (e_value=1e-81) PREDICTED: la-related protein 6-like [Vitis vinifera];; (*SWP) sp|Q8BN59|LARP6_MOUSE (e_value=5e-16) La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1;; (*TAIR) AT5G46250.1 (e_value=2e-57) | Symbols: | RNA-binding protein | chr5:18755388-18758056 FORWARD LENGTH=422;; (*ITAG) Solyc02g070550.2.1 (e_value=8e-165) genomic_reference:SL2.40ch02 gene_region:34870137-34875497 transcript_region:SL2.40ch02:34870137..34875497+ go_terms:GO:0005515 functional_description:"La-related protein 6 (AHRD V1 *--- LARP6_HUMAN); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0005515 NbS00025917g0008.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|357473125|ref|XP_003606847.1| (e_value=8e-38) Diphthamide biosynthesis protein [Medicago truncatula];; (*SWP) sp|P0C0V4|DPH3_EMENI (e_value=6e-16) Diphthamide biosynthesis protein 3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph3 PE=3 SV=1;; (*TAIR) AT2G15910.2 (e_value=3e-36) | Symbols: | CSL zinc finger domain-containing protein | chr2:6935088-6935333 REVERSE LENGTH=81;; (*ITAG) Solyc01g109070.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:87876278-87876893 transcript_region:SL2.40ch01:87876278..87876893+ go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 3 (AHRD V1 ***- B6SIS6_MAIZE); contains Interpro domain(s) IPR007872 Zinc finger, DPH-type "; GO:0005515 NbS00025917g0001.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|629; (*GB) gi|225447872|ref|XP_002269015.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZQF1|PP152_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1;; (*TAIR) AT2G15630.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:6814521-6816404 FORWARD LENGTH=627;; (*ITAG) Solyc01g109060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87873769-87876049 transcript_region:SL2.40ch01:87873769..87876049- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00025917g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0|0.75|1|1|4|0|253; (*GB) gi|359480611|ref|XP_003632499.1| (e_value=2e-111) PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera];; (*TAIR) AT3G49880.1 (e_value=6e-104) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=2e-138) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00008195g0010.1 protein AED:0.04 eAED:0.04 QI:0|0|0.33|1|0.5|0.66|3|0|289; (*GB) gi|225452173|ref|XP_002270738.1| (e_value=3e-46) PREDICTED: uncharacterized protein LOC100249110 [Vitis vinifera];; (*TAIR) AT3G48510.1 (e_value=3e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17967568-17968452 REVERSE LENGTH=294;; (*ITAG) Solyc02g068030.1.1 (e_value=5e-125) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32661807-32662649 transcript_region:SL2.40ch02:32661807..32662649- functional_description:"Unknown Protein (AHRD V1)"; NbS00008195g0008.1 protein AED:0.76 eAED:0.93 QI:0|0|0.2|0.6|0.25|0.6|5|0|146 NbS00031674g0005.1 protein AED:0.03 eAED:0.03 QI:52|0.93|0.87|1|0.66|0.75|16|0|578; (*GB) gi|255547832|ref|XP_002514973.1| (e_value=0.0) oligopeptidase, putative [Ricinus communis];; (*SWP) sp|P52888|THOP1_HUMAN (e_value=6e-103) Thimet oligopeptidase OS=Homo sapiens GN=THOP1 PE=1 SV=2;; (*TAIR) AT1G67690.1 (e_value=0.0) | Symbols: | Zincin-like metalloproteases family protein | chr1:25369086-25373730 FORWARD LENGTH=710;; (*ITAG) Solyc09g014890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7125036-7153191 transcript_region:SL2.40ch09:7125036..7153191+ go_terms:GO:0006508 functional_description:"Mitochondrial intermediate peptidase (AHRD V1 **-- MIPEP_HUMAN); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0006508 NbS00002282g0005.1 protein AED:0.23 eAED:0.23 QI:303|0.88|0.94|1|0.66|0.57|19|626|650; (*GB) gi|3299896|gb|AAC25984.1| (e_value=0.0) beta-galactosidase [Solanum lycopersicum];; (*SWP) sp|P48981|BGAL_MALDO (e_value=0.0) Beta-galactosidase OS=Malus domestica PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00042335g0005.1 protein AED:0.17 eAED:0.18 QI:0|0.75|0.55|1|0.75|0.88|9|291|1030; (*GB) gi|118487135|gb|ABK95396.1| (e_value=1e-121) unknown [Populus trichocarpa];; (*SWP) sp|P49756|RBM25_HUMAN (e_value=2e-24) RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3;; (*TAIR) AT1G60200.1 (e_value=7e-79) | Symbols: | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | chr1:22200882-22205241 REVERSE LENGTH=899;; (*ITAG) Solyc05g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:433869-439585 transcript_region:SL2.40ch05:433869..439585- go_terms:GO:0003676,GO:0000166,GO:0006397 functional_description:"RNA-binding protein 25 (AHRD V1 *--- RBM25_HUMAN); contains Interpro domain(s) IPR002483 Splicing factor PWI "; GO:0003676,GO:0000166,GO:0006397 NbS00037010g0007.1 protein AED:0.08 eAED:0.08 QI:27|1|0.5|1|1|1|2|0|67; (*GB) gi|356501566|ref|XP_003519595.1| (e_value=4e-24) PREDICTED: EH domain-containing protein 1-like [Glycine max];; (*TAIR) AT3G20290.2 (e_value=1e-22) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc07g064910.2.1 (e_value=6e-34) genomic_reference:SL2.40ch07 gene_region:64106940-64112207 transcript_region:SL2.40ch07:64106940..64112207+ go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **** B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00037010g0011.1 protein AED:0.09 eAED:0.09 QI:76|1|1|1|0.66|0.75|4|295|435; (*GB) gi|297834964|ref|XP_002885364.1| (e_value=0.0) extracellular ligand-gated ion channel [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G20300.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc07g064900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64102233-64106112 transcript_region:SL2.40ch07:64102233..64106112+ functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00037010g0010.1 protein AED:0.14 eAED:0.14 QI:258|0.92|0.78|1|0.84|0.92|14|232|551; (*GB) gi|225460867|ref|XP_002277794.1| (e_value=0.0) PREDICTED: EH domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q5E9R3|EHD1_BOVIN (e_value=3e-142) EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1;; (*TAIR) AT3G20290.2 (e_value=0.0) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc07g064910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64106940-64112207 transcript_region:SL2.40ch07:64106940..64112207+ go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **** B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00037010g0012.1 protein AED:0.30 eAED:0.34 QI:20|0.5|0.66|1|0|0|3|0|115; (*GB) gi|91107221|gb|ABE11612.1| (e_value=1e-59) SWIb domain-containing protein [Solanum chacoense];; (*TAIR) AT4G26810.2 (e_value=4e-51) | Symbols: | SWIB/MDM2 domain superfamily protein | chr4:13492247-13492649 REVERSE LENGTH=106;; (*ITAG) Solyc07g064920.2.1 (e_value=6e-62) genomic_reference:SL2.40ch07 gene_region:64113931-64115700 transcript_region:SL2.40ch07:64113931..64115700+ functional_description:"SWIb domain-containing protein (AHRD V1 ***- Q1PCH7_SOLCH); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00009751g0017.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|285; (*GB) gi|356569422|ref|XP_003552900.1| (e_value=9e-70) PREDICTED: uncharacterized transporter sll0355-like [Glycine max];; (*SWP) sp|P74436|Y355_SYNY3 (e_value=3e-33) Uncharacterized transporter sll0355 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0355 PE=3 SV=1;; (*TAIR) AT3G02690.1 (e_value=8e-66) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:579627-581448 FORWARD LENGTH=417;; (*ITAG) Solyc02g036470.2.1 (e_value=2e-109) genomic_reference:SL2.40ch02 gene_region:21514105-21519145 transcript_region:SL2.40ch02:21514105..21519145- go_terms:GO:0016020 functional_description:"Drug/metabolite transporter (AHRD V1 ***- B4TLZ1_SALSV); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00009751g0012.1 protein AED:0.21 eAED:0.29 QI:0|0|0|1|1|1|3|0|241; (*GB) gi|224134901|ref|XP_002321933.1| (e_value=8e-75) predicted protein [Populus trichocarpa];; (*TAIR) AT5G36970.1 (e_value=3e-71) | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248;; (*ITAG) Solyc02g036480.1.1 (e_value=3e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21545583-21546353 transcript_region:SL2.40ch02:21545583..21546353- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00009751g0018.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.5|1|1|2|0|93; (*ITAG) Solyc02g036470.2.1 (e_value=2e-13) genomic_reference:SL2.40ch02 gene_region:21514105-21519145 transcript_region:SL2.40ch02:21514105..21519145- go_terms:GO:0016020 functional_description:"Drug/metabolite transporter (AHRD V1 ***- B4TLZ1_SALSV); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00036012g0001.1 protein AED:0.06 eAED:0.06 QI:402|0.9|0.90|1|0.8|0.72|11|136|356; (*GB) gi|255555799|ref|XP_002518935.1| (e_value=0.0) Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis];; (*SWP) sp|Q9MAP8|B3GT6_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1;; (*TAIR) AT1G32930.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:11931980-11934399 REVERSE LENGTH=399;; (*ITAG) Solyc11g013490.1.1 (e_value=1e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6543160-6549507 transcript_region:SL2.40ch11:6543160..6549507+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00036012g0008.1 protein AED:0.22 eAED:0.22 QI:151|1|0.83|1|1|1|6|0|424; (*GB) gi|225426534|ref|XP_002278777.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247984 isoform 1 [Vitis vinifera];; (*TAIR) AT1G64720.1 (e_value=3e-164) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc08g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62986084-62991290 transcript_region:SL2.40ch08:62986084..62991290- functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00022195g0013.1 protein AED:0.03 eAED:0.03 QI:248|1|0.5|1|0.66|0.25|4|0|142; (*GB) gi|297833818|ref|XP_002884791.1| (e_value=4e-69) hypothetical protein ARALYDRAFT_897214 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=2e-70) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=1e-71) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=4e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00022195g0010.1 protein AED:0.27 eAED:0.29 QI:0|0.77|0.65|0.95|0.86|0.91|23|0|988; (*GB) gi|225448968|ref|XP_002269663.1| (e_value=0.0) PREDICTED: probable exocyst complex component 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=0.0) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=0.0) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00057202g0004.1 protein AED:0.24 eAED:0.24 QI:779|0.5|0.33|0.66|0.5|0.33|3|0|365; (*GB) gi|255559953|ref|XP_002520995.1| (e_value=3e-124) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|O04336|WRK21_ARATH (e_value=2e-80) Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1;; (*TAIR) AT2G30590.1 (e_value=2e-81) | Symbols: WRKY21 | WRKY DNA-binding protein 21 | chr2:13033891-13035303 FORWARD LENGTH=380;; (*ITAG) Solyc06g008610.2.1 (e_value=8e-165) genomic_reference:SL2.40ch06 gene_region:2512503-2514892 transcript_region:SL2.40ch06:2512503..2514892+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 25 (AHRD V1 ***- C9DI14_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00019085g0006.1 protein AED:0.21 eAED:0.21 QI:205|1|1|1|1|1|3|512|143; (*GB) gi|2499967|sp|Q41229.1|PSAEB_NICSY (e_value=3e-57) RecName: Full=Photosystem I reaction center subunit IV B, chloroplastic; Short=PSI-E B; Contains: RecName: Full=Photosystem I reaction center subunit IV B isoform 2; Flags: Precursor;; (*SWP) sp|Q41229|PSAEB_NICSY (e_value=1e-58) Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1;; (*TAIR) AT2G20260.1 (e_value=8e-34) | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145;; (*ITAG) Solyc09g063130.2.1 (e_value=7e-49) genomic_reference:SL2.40ch09 gene_region:56787134-56789056 transcript_region:SL2.40ch09:56787134..56789056+ go_terms:GO:0009536,GO:0009538 functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE "; GO:0009536,GO:0009538 NbS00019085g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|225437902|ref|XP_002266744.1| (e_value=3e-48) PREDICTED: glutathione transferase GST 23 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZW24|GSTU7_ARATH (e_value=2e-39) Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=1e-40) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc09g063150.2.1 (e_value=7e-56) genomic_reference:SL2.40ch09 gene_region:56794180-56795954 transcript_region:SL2.40ch09:56794180..56795954+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364 NbS00019085g0007.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.75|1|0.66|0.75|4|350|337; (*GB) gi|224129560|ref|XP_002320616.1| (e_value=2e-126) predicted protein [Populus trichocarpa];; (*TAIR) AT4G28740.1 (e_value=6e-111) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD LENGTH=347;; (*ITAG) Solyc09g063140.2.1 (e_value=6e-170) genomic_reference:SL2.40ch09 gene_region:56789048-56792621 transcript_region:SL2.40ch09:56789048..56792621- functional_description:"Os06g0235500 protein (Fragment) (AHRD V1 *-*- Q0DDB7_ORYSJ)"; NbS00009399g0006.1 protein AED:0.11 eAED:0.11 QI:48|1|1|1|1|1|4|9|152; (*GB) gi|27085253|gb|AAN85431.1| (e_value=5e-96) hemoglobin [Solanum tuberosum];; (*SWP) sp|Q9FVL0|HBL1_MEDSA (e_value=4e-91) Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1;; (*TAIR) AT2G16060.1 (e_value=7e-82) | Symbols: GLB1, AHB1, ARATH GLB1, NSHB1, ATGLB1, HB1 | hemoglobin 1 | chr2:6982782-6983522 REVERSE LENGTH=160;; (*ITAG) Solyc07g008240.2.1 (e_value=7e-97) genomic_reference:SL2.40ch07 gene_region:2965697-2967964 transcript_region:SL2.40ch07:2965697..2967964- go_terms:GO:0005344,GO:0019825 functional_description:"Non-symbiotic hemoglobin protein (AHRD V1 ***- Q4VIX3_GOSHI); contains Interpro domain(s) IPR001032 Leghaemoglobin "; GO:0005344,GO:0019825 NbS00009399g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|475; (*GB) gi|76786466|gb|ABA54984.1| (e_value=0.0) allene oxide syntase [Solanum tuberosum];; (*SWP) sp|Q0PHS9|DES_CAPAN (e_value=2e-180) 9-divinyl ether synthase OS=Capsicum annuum GN=DES PE=2 SV=1;; (*TAIR) AT5G42650.1 (e_value=1e-163) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc10g007960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2121096-2122571 transcript_region:SL2.40ch10:2121096..2122571- go_terms:GO:0019825,GO:0009978 functional_description:"Allene oxide synthase (AHRD V1 **-* A0MAV5_SOYBN); contains Interpro domain(s) IPR001128 Cytochrome P450 "; GO:0019825,GO:0009978 NbS00040048g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|356; (*GB) gi|46849529|dbj|BAD17855.1| (e_value=0.0) gibberellin 2-oxidase 1 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=4e-152) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G30040.1 (e_value=2e-128) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc07g061720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61904916-61906322 transcript_region:SL2.40ch07:61904916..61906322- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL8_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00010983g0010.1 protein AED:0.02 eAED:0.02 QI:62|1|1|1|0.66|0.75|4|137|374; (*GB) gi|255585218|ref|XP_002533311.1| (e_value=4e-137) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O23470|GDL64_ARATH (e_value=7e-71) GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2;; (*TAIR) AT1G71250.1 (e_value=8e-72) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26860125-26861582 FORWARD LENGTH=374;; (*ITAG) Solyc06g065530.2.1 (e_value=8e-159) genomic_reference:SL2.40ch06 gene_region:37300109-37303848 transcript_region:SL2.40ch06:37300109..37303848- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00010983g0009.1 protein AED:0.10 eAED:0.13 QI:0|0|0.2|0.6|0.5|0.4|5|0|579; (*GB) gi|18406426|ref|NP_566005.1| (e_value=0.0) transcription termination factor domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT2G44020.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:18217737-18219260 REVERSE LENGTH=507;; (*ITAG) Solyc11g017050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7847836-7849332 transcript_region:SL2.40ch11:7847836..7849332+ functional_description:"Mitochondrial transcription termination factor (AHRD V1 **-- D8WKY3_TRITU); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00010983g0101.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|944 NbS00010983g0118.1 protein AED:0.33 eAED:0.33 QI:235|0.66|0.75|0.75|0|0.25|4|0|30 NbS00010983g0107.1 protein AED:0.55 eAED:0.55 QI:0|0.2|0.16|0.5|1|1|6|0|260 NbS00010983g0202.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.87|0.77|9|359|325 NbS00010983g0207.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|117 NbS00009894g0011.1 protein AED:0.10 eAED:0.10 QI:28|1|1|1|0.66|0.71|7|7|493; (*GB) gi|255539747|ref|XP_002510938.1| (e_value=0.0) endo-1,4-beta-glucanase, putative [Ricinus communis];; (*SWP) sp|Q9CAC1|GUN8_ARATH (e_value=0.0) Endoglucanase 8 OS=Arabidopsis thaliana GN=CEL1 PE=2 SV=1;; (*TAIR) AT1G70710.1 (e_value=0.0) | Symbols: ATGH9B1, CEL1, GH9B1 | glycosyl hydrolase 9B1 | chr1:26659356-26662962 REVERSE LENGTH=492;; (*ITAG) Solyc03g083820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47266759-47268986 transcript_region:SL2.40ch03:47266759..47268986- go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00009894g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.6|0.66|6|405|168; (*GB) gi|225466073|ref|XP_002264446.1| (e_value=9e-52) PREDICTED: uncharacterized protein LOC100267239 isoform 1 [Vitis vinifera];; (*TAIR) AT5G51510.1 (e_value=1e-40) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20921512-20922818 FORWARD LENGTH=170;; (*ITAG) Solyc11g006880.1.1 (e_value=3e-97) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1417654-1420489 transcript_region:SL2.40ch11:1417654..1420489- functional_description:"Genomic DNA chromosome 5 TAC clone K17N15 (AHRD V1 **-- Q9FHN3_ARATH); contains Interpro domain(s) IPR009787 Protein of unknown function DUF1352 "; NbS00009894g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|8096279|dbj|BAA95794.1| (e_value=2e-110) DC1.2 homologue [Nicotiana tabacum];; (*SWP) sp|P17407|21KD_DAUCA (e_value=9e-41) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62360.1 (e_value=2e-59) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25040699-25041310 FORWARD LENGTH=203;; (*ITAG) Solyc03g083730.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:47216694-47217299 transcript_region:SL2.40ch03:47216694..47217299+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00027351g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|131; (*GB) gi|359481749|ref|XP_003632669.1| (e_value=6e-51) PREDICTED: L-type lectin-domain containing receptor kinase IV.2-like [Vitis vinifera];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=1e-36) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=8e-38) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc09g011070.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4400701-4402746 transcript_region:SL2.40ch09:4400701..4402746- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00055145g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|3|0|116; (*GB) gi|30387025|emb|CAD89799.1| (e_value=4e-67) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=7e-60) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=5e-61) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g074990.1.1 (e_value=4e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00016921g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|110740688|dbj|BAE98446.1| (e_value=2e-57) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT2G18840.1 (e_value=2e-59) | Symbols: | Integral membrane Yip1 family protein | chr2:8158288-8159848 FORWARD LENGTH=281;; (*ITAG) Solyc07g018220.2.1 (e_value=1e-72) genomic_reference:SL2.40ch07 gene_region:9780819-9785964 transcript_region:SL2.40ch07:9780819..9785964- go_terms:GO:0017137 functional_description:"Yip1 domain containing protein expressed (AHRD V1 **-- D8L9M4_WHEAT); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbC23659389g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|302143953|emb|CBI23058.3| (e_value=3e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6R3K9|YSL2_ARATH (e_value=5e-37) Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1;; (*TAIR) AT5G24380.1 (e_value=4e-38) | Symbols: YSL2, ATYSL2 | YELLOW STRIPE like 2 | chr5:8324098-8326525 FORWARD LENGTH=664;; (*ITAG) Solyc08g083060.2.1 (e_value=1e-36) genomic_reference:SL2.40ch08 gene_region:62808532-62811413 transcript_region:SL2.40ch08:62808532..62811413+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00058899g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|832; (*GB) gi|225436305|ref|XP_002269994.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase KIPK-like [Vitis vinifera];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=3e-176) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT2G36350.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:15238903-15241864 FORWARD LENGTH=949;; (*ITAG) Solyc06g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42473902-42477685 transcript_region:SL2.40ch06:42473902..42477685+ go_terms:GO:0004672,GO:0005515 functional_description:"Protein kinase (AHRD V1 *-** A7VL53_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00022267g0010.1 protein AED:0.19 eAED:0.19 QI:334|0.86|0.81|0.93|0.8|0.75|16|0|655; (*GB) gi|359475773|ref|XP_002267701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257121 [Vitis vinifera];; (*TAIR) AT3G54750.1 (e_value=4e-151) | Symbols: | unknown protein; Has 145 Blast hits to 145 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:20264833-20268416 REVERSE LENGTH=589;; (*ITAG) Solyc01g006700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1277385-1285298 transcript_region:SL2.40ch01:1277385..1285298- functional_description:"Downstream neighbor of SON (AHRD V1 *-*- Q5U2V7_RAT)"; NbS00022267g0007.1 protein AED:0.63 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|82 NbS00022267g0003.1 protein AED:0.12 eAED:0.12 QI:461|0.5|0.8|1|0|0.4|5|571|405; (*GB) gi|255566241|ref|XP_002524108.1| (e_value=8e-126) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G06560.1 (e_value=1e-95) | Symbols: | Protein of unknown function, DUF593 | chr5:2003678-2005543 REVERSE LENGTH=518;; (*ITAG) Solyc10g081620.1.1 (e_value=5e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61992772-61996010 transcript_region:SL2.40ch10:61992772..61996010+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00057152g0002.1 protein AED:0.00 eAED:0.00 QI:214|1|1|1|0|0.5|2|100|159; (*GB) gi|224066787|ref|XP_002302215.1| (e_value=4e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPK5|CML44_ARATH (e_value=3e-32) Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2;; (*TAIR) AT1G21550.1 (e_value=2e-33) | Symbols: | Calcium-binding EF-hand family protein | chr1:7553317-7553784 REVERSE LENGTH=155;; (*ITAG) Solyc04g058160.1.1 (e_value=3e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54401896-54402372 transcript_region:SL2.40ch04:54401896..54402372+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6SMJ0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00001759g0002.1 protein AED:0.14 eAED:0.14 QI:63|0|0.5|1|0|0.5|2|0|312; (*GB) gi|356569999|ref|XP_003553180.1| (e_value=6e-61) PREDICTED: uncharacterized protein LOC100818023 [Glycine max];; (*TAIR) AT3G08600.1 (e_value=6e-48) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc04g055100.1.1 (e_value=8e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:52819722-52820672 transcript_region:SL2.40ch04:52819722..52820672- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00001759g0001.1 protein AED:0.06 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|364; (*GB) gi|224069094|ref|XP_002326273.1| (e_value=1e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=5e-55) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc04g055100.1.1 (e_value=6e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:52819722-52820672 transcript_region:SL2.40ch04:52819722..52820672- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00001759g0104.1 protein AED:0.83 eAED:0.93 QI:0|0|0|0.4|1|1|5|0|142 NbS00027523g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|76 NbS00027523g0008.1 protein AED:0.25 eAED:0.25 QI:107|1|0.71|1|1|1|7|0|452; (*GB) gi|121308298|dbj|BAF43573.1| (e_value=0.0) pectate lyase [Prunus persica];; (*SWP) sp|Q944R1|PLY15_ARATH (e_value=0.0) Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1;; (*TAIR) AT4G13710.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:7962550-7966012 FORWARD LENGTH=470;; (*ITAG) Solyc09g091430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66051415-66055786 transcript_region:SL2.40ch09:66051415..66055786- go_terms:GO:0016829 functional_description:"Pectate lyase 1-27 (AHRD V1 **** B9TU35_9ROSI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00027523g0007.1 protein AED:0.41 eAED:0.43 QI:0|0.37|0.33|0.77|0.37|0.33|9|218|256; (*GB) gi|147845569|emb|CAN78490.1| (e_value=8e-87) hypothetical protein VITISV_004933 [Vitis vinifera];; (*SWP) sp|F6HS55|ITPA_VITVI (e_value=6e-86) Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VIT_05s0051g00580 PE=2 SV=1;; (*TAIR) AT4G13720.1 (e_value=6e-84) | Symbols: | Inosine triphosphate pyrophosphatase family protein | chr4:7967166-7968894 REVERSE LENGTH=206;; (*ITAG) Solyc09g091420.2.1 (e_value=8e-102) genomic_reference:SL2.40ch09 gene_region:66045412-66049624 transcript_region:SL2.40ch09:66045412..66049624+ go_terms:GO:0047429 functional_description:"Nucleoside-triphosphatase (AHRD V1 **** B2VUE6_PYRTR); contains Interpro domain(s) IPR002637 Ham1-like protein "; GO:0047429 NbS00013261g0005.1 protein AED:0.22 eAED:0.22 QI:258|0.92|0.96|1|0.85|0.89|29|352|1009; (*GB) gi|350538359|ref|NP_001234851.1| (e_value=0.0) alpha-mannosidase precursor [Solanum lycopersicum];; (*SWP) sp|Q8VHC8|MA2B1_CAVPO (e_value=0.0) Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1;; (*TAIR) AT5G13980.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 38 protein | chr5:4508626-4514334 FORWARD LENGTH=1024;; (*ITAG) Solyc06g068860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39073381-39083550 transcript_region:SL2.40ch06:39073381..39083550+ go_terms:GO:0004559 functional_description:"Alpha-mannosidase (AHRD V1 **** D3TI68_SOLLC); contains Interpro domain(s) IPR011682 Glycosyl hydrolases 38, C-terminal "; GO:0004559 NbS00008095g0005.1 protein AED:0.30 eAED:0.31 QI:0|1|0.5|1|0|0|2|0|103; (*GB) gi|224111662|ref|XP_002332898.1| (e_value=6e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g164580.1.1 (e_value=3e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17840292-17841447 transcript_region:SL2.40ch00:17840292..17841447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008095g0006.1 protein AED:0.36 eAED:0.93 QI:0|0|0|1|0|0|2|0|73 NbS00060342g0001.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|356529801|ref|XP_003533476.1| (e_value=1e-61) PREDICTED: uncharacterized protein LOC100787678 [Glycine max];; (*TAIR) AT5G45320.1 (e_value=5e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18362354-18363053 REVERSE LENGTH=198;; (*ITAG) Solyc08g075230.1.1 (e_value=2e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56515261-56515857 transcript_region:SL2.40ch08:56515261..56515857- functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 ***- Q9FKU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00054110g0004.1 protein AED:0.11 eAED:0.12 QI:387|1|0.5|1|1|1|2|0|388; (*GB) gi|224082688|ref|XP_002306796.1| (e_value=2e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=6e-116) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1;; (*TAIR) AT3G22830.1 (e_value=4e-117) | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription factor A6B | chr3:8078981-8080895 FORWARD LENGTH=406;; (*ITAG) Solyc09g065660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59473864-59475995 transcript_region:SL2.40ch09:59473864..59475995+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 ***- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00001978g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.25|1|1|4|0|109; (*ITAG) Solyc00g313030.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007598g0106.1 protein AED:0.15 eAED:0.15 QI:0|0.69|0.71|1|0.92|0.92|14|0|971 NbS00025046g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0.66|3|0|418; (*GB) gi|225465720|ref|XP_002263100.1| (e_value=6e-173) PREDICTED: UDP-glycosyltransferase 85A2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=3e-156) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=2e-157) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc01g105350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85309480-85311558 transcript_region:SL2.40ch01:85309480..85311558+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00025046g0010.1 protein AED:0.05 eAED:0.16 QI:0|0.25|0.2|1|0.75|0.8|5|0|271; (*GB) gi|357460979|ref|XP_003600771.1| (e_value=5e-99) 2-nitropropane dioxygenase-like protein [Medicago truncatula];; (*TAIR) AT5G64250.1 (e_value=2e-100) | Symbols: | Aldolase-type TIM barrel family protein | chr5:25697623-25698752 REVERSE LENGTH=293;; (*ITAG) Solyc01g105370.2.1 (e_value=1e-123) genomic_reference:SL2.40ch01 gene_region:85318617-85322249 transcript_region:SL2.40ch01:85318617..85322249- go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl-(Acyl-carrier-protein) reductase II (AHRD V1 **-- C7IPB6_THEET); contains Interpro domain(s) IPR004136 2-nitropropane dioxygenase, NPD "; GO:0008152,GO:0055114 NbS00011997g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|417; (*GB) gi|225452805|ref|XP_002283468.1| (e_value=1e-172) PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=7e-34) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT5G15240.1 (e_value=2e-155) | Symbols: | Transmembrane amino acid transporter family protein | chr5:4947762-4950211 FORWARD LENGTH=423;; (*ITAG) Solyc03g013160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00011997g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|255582131|ref|XP_002531860.1| (e_value=2e-36) amino acid transporter, putative [Ricinus communis];; (*TAIR) AT3G28960.1 (e_value=1e-33) | Symbols: | Transmembrane amino acid transporter family protein | chr3:10984245-10985767 REVERSE LENGTH=405;; (*ITAG) Solyc03g013160.2.1 (e_value=1e-47) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00023519g0003.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|356566185|ref|XP_003551315.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100799508 [Glycine max];; (*TAIR) AT1G07280.3 (e_value=8e-63) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2238505-2240991 FORWARD LENGTH=552;; (*ITAG) Solyc06g076850.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:44132035-44135117 transcript_region:SL2.40ch06:44132035..44135117- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7LLC0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00023519g0007.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|2|0|499; (*GB) gi|225434642|ref|XP_002279786.1| (e_value=3e-84) PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera];; (*TAIR) AT1G07280.3 (e_value=9e-61) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2238505-2240991 FORWARD LENGTH=552;; (*ITAG) Solyc06g076850.2.1 (e_value=1e-130) genomic_reference:SL2.40ch06 gene_region:44132035-44135117 transcript_region:SL2.40ch06:44132035..44135117- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7LLC0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00005822g0002.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|224079694|ref|XP_002305915.1| (e_value=8e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02700.1 (e_value=6e-42) | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252;; (*ITAG) Solyc02g081580.2.1 (e_value=2e-56) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00005822g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|126; (*ITAG) Solyc03g031950.1.1 (e_value=1e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:8708260-8708952 transcript_region:SL2.40ch03:8708260..8708952- functional_description:"Unknown Protein (AHRD V1)"; NbS00043121g0005.1 protein AED:0.38 eAED:0.39 QI:124|0.62|0.66|1|1|1|9|0|273; (*GB) gi|225424940|ref|XP_002263763.1| (e_value=7e-120) PREDICTED: uncharacterized protein MJ0044 [Vitis vinifera];; (*TAIR) AT1G26640.1 (e_value=6e-108) | Symbols: | Amino acid kinase family protein | chr1:9207620-9209766 REVERSE LENGTH=332;; (*ITAG) Solyc04g005520.2.1 (e_value=8e-146) genomic_reference:SL2.40ch04 gene_region:345254-350535 transcript_region:SL2.40ch04:345254..350535- go_terms:GO:0019202 functional_description:"Aspartate/glutamate/uridylate kinase family protein (AHRD V1 **** D7KQN4_ARALY); contains Interpro domain(s) IPR001048 Aspartate/glutamate/uridylate kinase "; GO:0019202 NbS00043121g0006.1 protein AED:0.07 eAED:0.08 QI:0|0.66|0.75|1|1|1|4|329|84; (*GB) gi|124226|sp|P24922.1|IF5A2_NICPL (e_value=2e-43) RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2; AltName: Full=eIF-4D;; (*SWP) sp|P24922|IF5A2_NICPL (e_value=5e-45) Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1;; (*TAIR) AT1G69410.1 (e_value=3e-41) | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongation factor 5A-3 | chr1:26089301-26090194 FORWARD LENGTH=158;; (*ITAG) Solyc03g115650.2.1 (e_value=1e-43) genomic_reference:SL2.40ch03 gene_region:59340664-59343595 transcript_region:SL2.40ch03:59340664..59343595+ go_terms:GO:0003743,GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A "; GO:0003743,GO:0047485 NbS00006984g0018.1 protein AED:0.12 eAED:0.12 QI:941|1|1|1|0.2|0.16|6|167|245; (*GB) gi|224118286|ref|XP_002317781.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT3G49260.2 (e_value=1e-24) | Symbols: iqd21 | IQ-domain 21 | chr3:18262755-18265859 FORWARD LENGTH=471;; (*ITAG) Solyc03g083100.2.1 (e_value=1e-138) genomic_reference:SL2.40ch03 gene_region:46466257-46469172 transcript_region:SL2.40ch03:46466257..46469172- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00006984g0020.1 protein AED:0.11 eAED:0.10 QI:222|0.91|0.8|1|0.82|0.85|35|0|1652; (*GB) gi|302143908|emb|CBI23013.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24280.1 (e_value=0.0) | Symbols: GMI1 | gamma-irradiation and mitomycin c induced 1 | chr5:8251378-8261401 REVERSE LENGTH=1598;; (*ITAG) Solyc03g083130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46489215-46507533 transcript_region:SL2.40ch03:46489215..46507533+ functional_description:"At5g24280-like protein (Fragment) (AHRD V1 *-*- Q3YI82_ARALY)"; NbS00006984g0023.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.62|0.87|0.57|0.62|8|296|414; (*GB) gi|225455370|ref|XP_002277586.1| (e_value=8e-172) PREDICTED: uncharacterized protein LOC100257134 [Vitis vinifera];; (*TAIR) AT3G49250.1 (e_value=4e-132) | Symbols: DMS3, IDN1 | defective in meristem silencing 3 | chr3:18258613-18260803 REVERSE LENGTH=420;; (*ITAG) Solyc03g083210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46596166-46611121 transcript_region:SL2.40ch03:46596166..46611121+ go_terms:GO:0005515 functional_description:"At5g24280 (Fragment) (AHRD V1 *-*- Q3YIX0_ARATH)"; GO:0005515 NbS00001634g0008.1 protein AED:0.09 eAED:0.13 QI:0|0.75|0.2|1|1|1|5|141|751; (*GB) gi|114053441|gb|AAK91899.2|AC091627_12 (e_value=0.0) hypothetical protein SDM1_2t00007 [Solanum demissum];; (*SWP) sp|Q5XVF0|MEE12_ARATH (e_value=1e-132) TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1;; (*TAIR) AT2G02955.1 (e_value=8e-134) | Symbols: MEE12 | maternal effect embryo arrest 12 | chr2:859592-861772 FORWARD LENGTH=666;; (*ITAG) Solyc11g071540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52057345-52061757 transcript_region:SL2.40ch11:52057345..52061757+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001634g0009.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|0|0.33|3|0|467; (*GB) gi|30016894|gb|AAP03997.1| (e_value=0.0) EIL1 [Nicotiana tabacum];; (*SWP) sp|Q9SLH0|EIL1_ARATH (e_value=3e-52) ETHYLENE INSENSITIVE 3-like 1 protein OS=Arabidopsis thaliana GN=EIL1 PE=1 SV=1;; (*TAIR) AT2G27050.1 (e_value=2e-53) | Symbols: EIL1, AtEIL1 | ETHYLENE-INSENSITIVE3-like 1 | chr2:11546314-11548068 FORWARD LENGTH=584;; (*ITAG) Solyc01g009170.2.1 (e_value=1e-140) genomic_reference:SL2.40ch01 gene_region:3203718-3206211 transcript_region:SL2.40ch01:3203718..3206211- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00011475g0007.1 protein AED:0.19 eAED:0.22 QI:187|0|0.5|1|0|0|2|0|626; (*GB) gi|255566438|ref|XP_002524204.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G15020.2 (e_value=0.0) | Symbols: | hAT transposon superfamily | chr4:8575806-8578372 FORWARD LENGTH=768;; (*ITAG) Solyc08g007470.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00011475g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.88|0.8|0.9|0.88|0.9|10|278|725; (*GB) gi|23664357|gb|AAN39330.1| (e_value=0.0) telomere binding protein TBP1 [Nicotiana glutinosa];; (*SWP) sp|Q9C7B1|TRP3_ARATH (e_value=1e-115) Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1;; (*TAIR) AT3G12560.1 (e_value=1e-116) | Symbols: TRFL9, ATTBP2 | TRF-like 9 | chr3:3982272-3984848 REVERSE LENGTH=619;; (*ITAG) Solyc05g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63483986-63489227 transcript_region:SL2.40ch05:63483986..63489227- go_terms:GO:0003691 functional_description:"Telomere binding protein (AHRD V1 **** A0JBS3_SOLLC); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003691 NbS00011475g0119.1 protein AED:0.16 eAED:0.19 QI:0|0.85|0.75|1|0.85|0.87|8|753|207 NbS00011475g0117.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.2|0.8|0.75|0.8|5|199|202 NbS00011475g0116.1 protein AED:0.08 eAED:0.11 QI:0|1|0.66|1|1|1|3|207|504 NbS00011475g0122.1 protein AED:0.25 eAED:0.22 QI:0|1|0.85|1|1|1|7|0|315 NbS00024346g0016.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0.5|2|0|761; (*GB) gi|225444712|ref|XP_002278292.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc08g067990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54264933-54267730 transcript_region:SL2.40ch08:54264933..54267730+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6SZ82_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00024346g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.5|0.83|0.4|0.33|6|0|395; (*GB) gi|56744191|dbj|BAD81035.1| (e_value=1e-173) potassium channel NtKC1 [Nicotiana tabacum];; (*SWP) sp|P92960|KAT3_ARATH (e_value=2e-127) Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1;; (*TAIR) AT4G32650.3 (e_value=4e-130) | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel in Arabidopsis thaliana 3 | chr4:15751482-15754797 REVERSE LENGTH=661;; (*ITAG) Solyc08g068000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54275241-54280148 transcript_region:SL2.40ch08:54275241..54280148- go_terms:GO:0005242,GO:0030551 functional_description:"Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (AHRD V1 *-** HCN2_HUMAN); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242,GO:0030551 NbS00024346g0012.1 protein AED:0.41 eAED:0.78 QI:0|0|0|1|0|0|3|0|93; (*ITAG) Solyc08g068000.1.1 (e_value=4e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54275241-54280148 transcript_region:SL2.40ch08:54275241..54280148- go_terms:GO:0005242,GO:0030551 functional_description:"Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (AHRD V1 *-** HCN2_HUMAN); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242,GO:0030551 NbS00026156g0005.1 protein AED:0.04 eAED:0.04 QI:245|1|1|1|0.75|0.6|5|375|248; (*GB) gi|77999238|gb|ABB16966.1| (e_value=3e-141) adenylate kinase family-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=2e-38) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT3G01820.1 (e_value=2e-67) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293981-295357 REVERSE LENGTH=263;; (*ITAG) Solyc03g005050.2.1 (e_value=1e-140) genomic_reference:SL2.40ch03 gene_region:44287-46883 transcript_region:SL2.40ch03:44287..46883+ go_terms:GO:0006139 functional_description:"Adenylate kinase family-like protein (AHRD V1 ***- Q38JG0_SOLTU); contains Interpro domain(s) IPR000850 Adenylate kinase "; GO:0006139 NbS00026156g0006.1 protein AED:0.02 eAED:0.02 QI:238|1|1|1|0.87|0.77|9|87|1039; (*GB) gi|356560501|ref|XP_003548530.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100775183 [Glycine max];; (*TAIR) AT3G01810.3 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921;; (*ITAG) Solyc03g005060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46988-52259 transcript_region:SL2.40ch03:46988..52259- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00007715g0003.1 protein AED:0.04 eAED:0.05 QI:92|0|0.5|1|0|0.5|2|0|354; (*GB) gi|356534929|ref|XP_003536003.1| (e_value=1e-136) PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=2e-129) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=1e-130) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc01g100210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82026124-82027926 transcript_region:SL2.40ch01:82026124..82027926- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 *-*- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00015330g0007.1 protein AED:0.22 eAED:0.23 QI:0|0.33|0.5|1|1|1|4|345|617; (*GB) gi|225438984|ref|XP_002284345.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2-like [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc02g092480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48111360-48115386 transcript_region:SL2.40ch02:48111360..48115386+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00001281g0003.1 protein AED:0.79 eAED:0.83 QI:0|0.1|0|0.27|1|1|11|0|452; (*GB) gi|193290694|gb|ACF17655.1| (e_value=0.0) putative ferredoxin-dependent glutamate synthase 1 [Capsicum annuum];; (*SWP) sp|Q43155|GLTB_SPIOL (e_value=0.0) Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=3;; (*TAIR) AT5G04140.1 (e_value=0.0) | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate synthase 1 | chr5:1130031-1138186 FORWARD LENGTH=1622;; (*ITAG) Solyc03g063560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:32287538-32328106 transcript_region:SL2.40ch03:32287538..32328106- go_terms:GO:0005515 functional_description:"Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C "; GO:0005515 NbS00060861g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|419789|pir||S31196 (e_value=0.0) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=3e-158) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=2e-159) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc12g055840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47199207-47200592 transcript_region:SL2.40ch12:47199207..47200592+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00028154g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|147804860|emb|CAN66874.1| (e_value=0.0) hypothetical protein VITISV_021428 [Vitis vinifera];; (*SWP) sp|O81117|C94A1_VICSA (e_value=2e-114) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT2G27690.1 (e_value=3e-167) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc10g083400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62546111-62547604 transcript_region:SL2.40ch10:62546111..62547604- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00028154g0011.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|0|0.5|2|0|160 NbS00028154g0010.1 protein AED:0.78 eAED:0.98 QI:0|0|0|0.25|0.28|0.37|8|0|329 NbS00044181g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|271; (*GB) gi|359494619|ref|XP_003634816.1| (e_value=2e-85) PREDICTED: protein strawberry notch-like [Vitis vinifera];; (*SWP) sp|Q5F371|SBNO1_CHICK (e_value=1e-18) Protein strawberry notch homolog 1 OS=Gallus gallus GN=SBNO1 PE=2 SV=1;; (*TAIR) AT1G79350.1 (e_value=5e-73) | Symbols: EMB1135 | RING/FYVE/PHD zinc finger superfamily protein | chr1:29844829-29853215 REVERSE LENGTH=1295;; (*ITAG) Solyc10g005490.2.1 (e_value=4e-99) genomic_reference:SL2.40ch10 gene_region:385399-413211 transcript_region:SL2.40ch10:385399..413211- go_terms:GO:0016564 functional_description:"Protein strawberry notch homolog 1 (AHRD V1 *-*- SBNO1_CHICK); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0016564 NbS00007602g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|294; (*GB) gi|445113|prf||1908418A (e_value=1e-128) acid phosphatase 1;; (*SWP) sp|P27061|PPA1_SOLLC (e_value=6e-130) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=9e-115) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc03g093470.2.1 (e_value=8e-151) genomic_reference:SL2.40ch03 gene_region:48203734-48206902 transcript_region:SL2.40ch03:48203734..48206902- go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00007602g0011.1 protein AED:0.13 eAED:0.15 QI:1940|0.92|0.92|1|0.81|0.76|39|472|1571; (*GB) gi|255539883|ref|XP_002511006.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C8Z4|HEAT1_ARATH (e_value=0.0) Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3;; (*TAIR) AT3G06530.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2022596-2033637 FORWARD LENGTH=2197;; (*ITAG) Solyc03g093480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48226050-48252855 transcript_region:SL2.40ch03:48226050..48252855- go_terms:GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 10 (AHRD V1 *--- C8VGG5_EMENI); contains Interpro domain(s) IPR012954 BP28, C-terminal "; GO:0005515 NbS00001268g0003.1 protein AED:0.31 eAED:0.27 QI:189|0.9|0.72|1|0.8|0.81|11|0|358; (*GB) gi|76573363|gb|ABA46786.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q54RA4|Y3291_DICDI (e_value=3e-42) Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1;; (*TAIR) AT3G50210.3 (e_value=3e-163) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:18614338-18616229 REVERSE LENGTH=332;; (*ITAG) Solyc02g093080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48592527-48596208 transcript_region:SL2.40ch02:48592527..48596208- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* ACCO1_DICMU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00013690g0016.1 protein AED:0.11 eAED:0.11 QI:75|0.87|0.88|1|0.87|1|9|351|478; (*GB) gi|27544008|dbj|BAC54828.1| (e_value=0.0) vacuolar processing enzyme-1b [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=0.0) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50956613-50962513 transcript_region:SL2.40ch08:50956613..50962513- go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00013690g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.7|1|0.66|0.6|10|124|459; (*GB) gi|39748726|emb|CAE84598.1| (e_value=0.0) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49044|VPE_VICSA (e_value=2e-150) Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1;; (*TAIR) AT4G32940.1 (e_value=2e-143) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51198895-51202956 transcript_region:SL2.40ch08:51198895..51202956+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00013690g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.77|0.6|0.9|0.88|0.9|10|0|513; (*GB) gi|39748726|emb|CAE84598.1| (e_value=0.0) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=3e-179) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=6e-173) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51149160-51151397 transcript_region:SL2.40ch08:51149160..51151397+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00013690g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.4|0.8|0.5|0.4|5|0|133; (*GB) gi|39748726|emb|CAE84598.1| (e_value=2e-66) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49044|VPE_VICSA (e_value=1e-55) Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1;; (*TAIR) AT4G32940.1 (e_value=4e-55) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065710.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51198895-51202956 transcript_region:SL2.40ch08:51198895..51202956+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00042547g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|452; (*GB) gi|225453947|ref|XP_002274056.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O22137|PP202_ARATH (e_value=2e-166) Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2;; (*TAIR) AT2G45350.1 (e_value=2e-167) | Symbols: CRR4 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:18694816-18696657 REVERSE LENGTH=613;; (*ITAG) Solyc01g091240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76671874-76674001 transcript_region:SL2.40ch01:76671874..76674001- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00042547g0010.1 protein AED:0.05 eAED:0.05 QI:281|0.75|0.6|1|0.75|0.8|5|337|704; (*GB) gi|147798550|emb|CAN72186.1| (e_value=0.0) hypothetical protein VITISV_012898 [Vitis vinifera];; (*SWP) sp|Q9ZVR7|PSKR1_ARATH (e_value=2e-58) Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4;; (*TAIR) AT2G45340.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:18691739-18694466 FORWARD LENGTH=691;; (*ITAG) Solyc01g091230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76667116-76670365 transcript_region:SL2.40ch01:76667116..76670365+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00042547g0004.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|67; (*ITAG) Solyc09g091110.2.1 (e_value=1e-25) genomic_reference:SL2.40ch09 gene_region:65811942-65813198 transcript_region:SL2.40ch09:65811942..65813198- functional_description:"Unknown Protein (AHRD V1)"; NbS00042547g0011.1 protein AED:0.53 eAED:0.53 QI:0|0.33|0|0.75|0.66|0.75|4|0|157; (*GB) gi|118487731|gb|ABK95689.1| (e_value=6e-15) unknown [Populus trichocarpa];; (*ITAG) Solyc01g091260.2.1 (e_value=7e-49) genomic_reference:SL2.40ch01 gene_region:76682184-76686338 transcript_region:SL2.40ch01:76682184..76686338- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00014284g0005.1 protein AED:0.17 eAED:0.18 QI:0|1|0|1|1|1|2|189|352; (*GB) gi|225463175|ref|XP_002269719.1| (e_value=1e-149) PREDICTED: probable carboxylesterase 18 [Vitis vinifera];; (*SWP) sp|Q9LT10|CXE18_ARATH (e_value=9e-139) Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=2 SV=1;; (*TAIR) AT5G23530.1 (e_value=7e-140) | Symbols: AtCXE18, CXE18 | carboxyesterase 18 | chr5:7933366-7934373 REVERSE LENGTH=335;; (*ITAG) Solyc10g054780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51415394-51418771 transcript_region:SL2.40ch10:51415394..51418771- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00035999g0011.1 protein AED:0.27 eAED:0.32 QI:196|0.83|0.76|1|0.83|0.76|13|0|459; (*GB) gi|48209878|gb|AAT40484.1| (e_value=0.0) putative Myb-like DNA-binding protein [Solanum demissum];; (*SWP) sp|P52551|MYBB_XENLA (e_value=1e-26) Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2;; (*TAIR) AT1G14350.2 (e_value=3e-147) | Symbols: FLP, MYB124 | Duplicated homeodomain-like superfamily protein | chr1:4908427-4910647 FORWARD LENGTH=436;; (*ITAG) Solyc05g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1752928-1757049 transcript_region:SL2.40ch05:1752928..1757049- go_terms:GO:0003700 functional_description:"Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00035999g0008.1 protein AED:0.29 eAED:0.29 QI:238|1|1|1|1|1|7|309|332; (*GB) gi|48209877|gb|AAT40483.1| (e_value=0.0) putative UDP-galactose transporter [Solanum demissum];; (*SWP) sp|Q9M9S6|UTR3_ARATH (e_value=0.0) UDP-galactose/UDP-glucose transporter 3 OS=Arabidopsis thaliana GN=UTR3 PE=1 SV=1;; (*TAIR) AT1G14360.1 (e_value=0.0) | Symbols: ATUTR3, UTR3 | UDP-galactose transporter 3 | chr1:4911362-4913029 REVERSE LENGTH=331;; (*ITAG) Solyc05g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1746851-1751800 transcript_region:SL2.40ch05:1746851..1751800+ go_terms:GO:0005459 functional_description:"UDP-galactose transporter 3 (AHRD V1 **** D7KBJ4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00020403g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|359496222|ref|XP_002263756.2| (e_value=2e-112) PREDICTED: pentatricopeptide repeat-containing protein At3g13150-like [Vitis vinifera];; (*SWP) sp|Q9LG23|PPR82_ARATH (e_value=3e-91) Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1;; (*TAIR) AT1G55890.1 (e_value=2e-92) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20901364-20902560 FORWARD LENGTH=398;; (*ITAG) Solyc02g079830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020403g0006.1 protein AED:0.17 eAED:0.37 QI:0|0|0|1|0|0|5|0|291; (*GB) gi|359496222|ref|XP_002263756.2| (e_value=3e-39) PREDICTED: pentatricopeptide repeat-containing protein At3g13150-like [Vitis vinifera];; (*SWP) sp|Q9LK57|PP226_ARATH (e_value=2e-30) Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1;; (*TAIR) AT3G13160.1 (e_value=1e-31) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394;; (*ITAG) Solyc02g079820.2.1 (e_value=2e-88) genomic_reference:SL2.40ch02 gene_region:38820569-38822023 transcript_region:SL2.40ch02:38820569..38822023+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058098g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0.25|0.75|1|1|4|220|114; (*GB) gi|82621170|gb|ABB86273.1| (e_value=1e-69) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=2e-67) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=6e-65) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00059963g0001.1 protein AED:0.07 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|364284027|ref|YP_004940552.1| (e_value=3e-26) ycf2 gene product (chloroplast) [Boea hygrometrica];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=1e-27) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-25) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-25) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00017881g0012.1 protein AED:0.24 eAED:0.27 QI:0|0.55|0.4|1|0.44|0.6|10|0|292; (*GB) gi|356570810|ref|XP_003553577.1| (e_value=5e-111) PREDICTED: uncharacterized protein LOC100807336 [Glycine max];; (*TAIR) AT2G36630.1 (e_value=2e-105) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:15352767-15355050 REVERSE LENGTH=459;; (*ITAG) Solyc09g008780.2.1 (e_value=1e-129) genomic_reference:SL2.40ch09 gene_region:2206511-2210995 transcript_region:SL2.40ch09:2206511..2210995+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 *-*- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00017881g0010.1 protein AED:0.28 eAED:0.45 QI:104|0.75|0.6|1|1|1|5|0|164; (*GB) gi|388505568|gb|AFK40850.1| (e_value=1e-73) unknown [Medicago truncatula];; (*SWP) sp|O65743|RL24_CICAR (e_value=1e-73) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT3G53020.1 (e_value=1e-73) | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e family protein | chr3:19660749-19661912 REVERSE LENGTH=163;; (*ITAG) Solyc10g083740.1.1 (e_value=5e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62828065-62829671 transcript_region:SL2.40ch10:62828065..62829671- go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00017881g0013.1 protein AED:0.40 eAED:0.73 QI:0|0|0|1|0.5|0.66|3|0|106 NbS00017881g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.75|1|0|0.5|4|325|308; (*GB) gi|255575471|ref|XP_002528637.1| (e_value=2e-158) ATPP2-A13, putative [Ricinus communis];; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=6e-147) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=4e-148) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc10g083730.1.1 (e_value=4e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62824693-62827560 transcript_region:SL2.40ch10:62824693..62827560+ functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00051652g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0.84|1|0.83|0.92|13|0|987; (*GB) gi|359491847|ref|XP_002272793.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240982 [Vitis vinifera];; (*SWP) sp|Q9HGL2|YHLA_SCHPO (e_value=1e-14) Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=2 SV=1;; (*TAIR) AT1G20760.1 (e_value=0.0) | Symbols: | Calcium-binding EF hand family protein | chr1:7209515-7214773 FORWARD LENGTH=1019;; (*ITAG) Solyc04g082560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63788827-63804388 transcript_region:SL2.40ch04:63788827..63804388+ go_terms:GO:0005509 functional_description:"Actin cytoskeleton-regulatory complex protein PAN1 (AHRD V1 *--- PAN1_MAGGR); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00020133g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|344; (*GB) gi|224095001|ref|XP_002310322.1| (e_value=2e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT5G67020.1 (e_value=1e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26749962-26751146 FORWARD LENGTH=394;; (*ITAG) Solyc02g063510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30185237-30186229 transcript_region:SL2.40ch02:30185237..30186229+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029790g0004.1 protein AED:0.17 eAED:0.17 QI:140|0.72|0.66|1|0.45|0.58|12|163|489; (*GB) gi|225458167|ref|XP_002281042.1| (e_value=0.0) PREDICTED: GTPase HflX-like [Vitis vinifera];; (*SWP) sp|D9R4W7|HFLX_CLOSW (e_value=2e-72) GTPase HflX OS=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) GN=hflX PE=3 SV=1;; (*TAIR) AT5G57960.1 (e_value=0.0) | Symbols: | GTP-binding protein, HflX | chr5:23463133-23466481 REVERSE LENGTH=540;; (*ITAG) Solyc04g080770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62453995-62459810 transcript_region:SL2.40ch04:62453995..62459810- go_terms:GO:0005525 functional_description:"GTP-binding protein hflX (AHRD V1 **** B6SXP6_MAIZE); contains Interpro domain(s) IPR016496 GTP-binding protein, HflX "; GO:0005525 NbS00006471g0005.1 protein AED:0.15 eAED:0.15 QI:222|0.66|0.46|1|0.91|0.84|13|0|1708; (*GB) gi|147788261|emb|CAN65296.1| (e_value=0.0) hypothetical protein VITISV_042325 [Vitis vinifera];; (*SWP) sp|O59722|FAB1_SCHPO (e_value=3e-38) 1-phosphatidylinositol 3-phosphate 5-kinase fab1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fab1 PE=2 SV=2;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc06g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37308987-37316738 transcript_region:SL2.40ch06:37308987..37316738- go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7KK53_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbS00008308g0006.1 protein AED:0.22 eAED:0.22 QI:304|1|0.9|1|0.88|0.8|10|0|463; (*GB) gi|38639323|gb|AAR25799.1| (e_value=0.0) oxysterol-binding protein [Solanum tuberosum];; (*SWP) sp|Q9LZM1|ORP3A_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 3A OS=Arabidopsis thaliana GN=ORP3A PE=1 SV=1;; (*TAIR) AT5G02100.1 (e_value=0.0) | Symbols: UNE18, ORP3A | Oxysterol-binding family protein | chr5:413639-416016 FORWARD LENGTH=453;; (*ITAG) Solyc10g084800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63532664-63539460 transcript_region:SL2.40ch10:63532664..63539460+ go_terms:GO:0008202 functional_description:"Oxysterol-binding protein (AHRD V1 ***- Q6ST25_SOLTU); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008202 NbS00008308g0007.1 protein AED:0.33 eAED:0.33 QI:0|1|0.8|1|0.25|0.4|5|2|184; (*GB) gi|255580315|ref|XP_002530986.1| (e_value=2e-48) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SR32|U161_ARATH (e_value=9e-45) UPF0161 protein At3g09310 OS=Arabidopsis thaliana GN=At3g09310 PE=2 SV=2;; (*TAIR) AT3G09310.1 (e_value=7e-46) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast hits to 5781 proteins in 1903 species: Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink). | chr3:2860622-2861297 REVERSE LENGTH=170;; (*ITAG) Solyc10g084810.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63540689-63541206 transcript_region:SL2.40ch10:63540689..63541206- functional_description:"UPF0161 protein yidD (AHRD V1 **-- YIDD_ECOL6); contains Interpro domain(s) IPR002696 Protein of unknown function DUF37 "; NbS00011845g0009.1 protein AED:0.07 eAED:0.07 QI:138|1|1|1|1|0.87|8|590|515; (*GB) gi|224082049|ref|XP_002306557.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-94) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=2e-157) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc04g074860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58374415-58378144 transcript_region:SL2.40ch04:58374415..58378144- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7MN36_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00011845g0005.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0.33|1|1|1|3|0|89; (*GB) gi|359496896|ref|XP_002262941.2| (e_value=1e-22) PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera];; (*TAIR) AT5G65380.1 (e_value=9e-22) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc04g074850.2.1 (e_value=1e-38) genomic_reference:SL2.40ch04 gene_region:58359526-58369622 transcript_region:SL2.40ch04:58359526..58369622- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00011845g0006.1 protein AED:0.40 eAED:0.70 QI:0|0|0|1|1|1|3|0|117; (*GB) gi|350534468|ref|NP_001234398.1| (e_value=2e-20) ripening regulated protein DDTFR18 [Solanum lycopersicum];; (*TAIR) AT5G44050.1 (e_value=6e-15) | Symbols: | MATE efflux family protein | chr5:17722484-17726209 FORWARD LENGTH=491;; (*ITAG) Solyc04g074840.2.1 (e_value=3e-25) genomic_reference:SL2.40ch04 gene_region:58343145-58346840 transcript_region:SL2.40ch04:58343145..58346840- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00026235g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.75|1|1|1|8|454|293; (*GB) gi|224114387|ref|XP_002316744.1| (e_value=3e-150) predicted protein [Populus trichocarpa];; (*TAIR) AT4G18060.1 (e_value=3e-149) | Symbols: | SH3 domain-containing protein | chr4:10027668-10029662 REVERSE LENGTH=351;; (*ITAG) Solyc02g071330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35391296-35396537 transcript_region:SL2.40ch02:35391296..35396537+ go_terms:GO:0030276 functional_description:"SH3 domain-containing guanine exchange factor (AHRD V1 *--- SGEF_HUMAN); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00038648g0003.1 protein AED:0.17 eAED:0.18 QI:0|0.8|0.66|1|1|1|6|590|362; (*GB) gi|302142033|emb|CBI19236.3| (e_value=3e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4KYM5|CCD42_ORYSJ (e_value=4e-62) Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2;; (*TAIR) AT2G22490.2 (e_value=1e-57) | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873 REVERSE LENGTH=362;; (*ITAG) Solyc04g076040.2.1 (e_value=1e-148) genomic_reference:SL2.40ch04 gene_region:58597640-58599964 transcript_region:SL2.40ch04:58597640..58599964- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin d2 (AHRD V1 **** Q6T2Z7_SOYBN); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00005932g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|216; (*GB) gi|225460737|ref|XP_002272640.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100241910 [Vitis vinifera];; (*TAIR) AT4G09620.1 (e_value=3e-65) | Symbols: | Mitochondrial transcription termination factor family protein | chr4:6077122-6078899 REVERSE LENGTH=212;; (*ITAG) Solyc11g017430.1.1 (e_value=3e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8355180-8357851 transcript_region:SL2.40ch11:8355180..8357851+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YD8_OSTTA); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00005932g0009.1 protein AED:0.14 eAED:0.14 QI:307|1|1|1|1|1|4|239|144; (*GB) gi|225460735|ref|XP_002272568.1| (e_value=8e-24) PREDICTED: gibberellin-regulated protein 9 [Vitis vinifera];; (*SWP) sp|Q8GWK5|GASA9_ARATH (e_value=7e-21) Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1;; (*TAIR) AT1G22690.3 (e_value=6e-22) | Symbols: | Gibberellin-regulated family protein | chr1:8027328-8027961 FORWARD LENGTH=119;; (*ITAG) Solyc11g017440.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:8383387-8384626 transcript_region:SL2.40ch11:8383387..8384626- functional_description:"Snakin-2 (AHRD V1 ***- B5AGT4_SOLTU); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00043323g0001.1 protein AED:0.15 eAED:0.27 QI:0|0|0|1|0|0|4|0|198; (*GB) gi|113205445|gb|AAW28576.2| (e_value=4e-29) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00060703g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.6|0.33|0.83|1|1|6|0|486; (*GB) gi|225439558|ref|XP_002264808.1| (e_value=6e-140) PREDICTED: uncharacterized protein LOC100267149 [Vitis vinifera];; (*SWP) sp|Q9NXS3|KLH28_HUMAN (e_value=5e-17) Kelch-like protein 28 OS=Homo sapiens GN=KLHL28 PE=2 SV=2;; (*TAIR) AT5G01660.1 (e_value=8e-107) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc10g076330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58574547-58578026 transcript_region:SL2.40ch10:58574547..58578026+ functional_description:"Kelch-like protein (AHRD V1 ***- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00001224g0007.1 protein AED:0.06 eAED:0.06 QI:31|1|1|1|0|0|2|1480|288; (*GB) gi|255583943|ref|XP_002532719.1| (e_value=2e-38) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=3e-28) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=3e-29) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc01g067010.2.1 (e_value=5e-21) genomic_reference:SL2.40ch01 gene_region:67739472-67740945 transcript_region:SL2.40ch01:67739472..67740945+ functional_description:"F-box family protein (AHRD V1 **-- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00001224g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|5|257|298; (*GB) gi|255546463|ref|XP_002514291.1| (e_value=6e-128) signal peptidase I, putative [Ricinus communis];; (*SWP) sp|Q8H0W1|PLSP1_ARATH (e_value=2e-123) Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2;; (*TAIR) AT3G24590.1 (e_value=2e-124) | Symbols: PLSP1 | plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291;; (*ITAG) Solyc12g007120.1.1 (e_value=6e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1555500-1559696 transcript_region:SL2.40ch12:1555500..1559696+ go_terms:GO:0016020,GO:0016021 functional_description:"Signal peptidase I (AHRD V1 *-*- B1WP51_CYAA5); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0016020,GO:0016021 NbS00006870g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.8|0.83|0.83|1|1|6|1017|258; (*GB) gi|82400140|gb|ABB72809.1| (e_value=8e-156) 60S ribosomal protein L7A-like protein [Solanum tuberosum];; (*SWP) sp|Q9LZH9|RL7A2_ARATH (e_value=4e-152) 60S ribosomal protein L7a-2 OS=Arabidopsis thaliana GN=RPL7AB PE=1 SV=1;; (*TAIR) AT3G62870.1 (e_value=3e-153) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr3:23242862-23244273 REVERSE LENGTH=256;; (*ITAG) Solyc06g064460.2.1 (e_value=5e-167) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00006870g0006.1 protein AED:0.39 eAED:0.41 QI:658|0.5|0.8|1|0.5|0.6|5|390|173; (*GB) gi|351721344|ref|NP_001237462.1| (e_value=2e-67) uncharacterized protein LOC100305584 [Glycine max];; (*TAIR) AT1G33490.1 (e_value=7e-63) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:12150941-12152276 REVERSE LENGTH=175;; (*ITAG) Solyc06g064450.2.1 (e_value=3e-82) genomic_reference:SL2.40ch06 gene_region:36526384-36531754 transcript_region:SL2.40ch06:36526384..36531754- functional_description:"Cytoplasmic membrane protein (AHRD V1 *-*- B6TYL5_MAIZE)"; NbS00006368g0005.1 protein AED:0.09 eAED:0.21 QI:0|0.2|0|1|0|0|6|0|452; (*GB) gi|255555323|ref|XP_002518698.1| (e_value=1e-106) copper ion binding protein, putative [Ricinus communis];; (*TAIR) AT3G19430.1 (e_value=8e-92) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc11g073150.1.1 (e_value=2e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53307462-53308534 transcript_region:SL2.40ch11:53307462..53308534+ go_terms:GO:0016042 functional_description:"Root cap protein 3 (Fragment) (AHRD V1 ***- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; GO:0016042 NbS00006368g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|118; (*ITAG) Solyc06g053700.1.1 (e_value=2e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33039569-33039916 transcript_region:SL2.40ch06:33039569..33039916+ functional_description:"At1g04330 (Fragment) (AHRD V1 ***- B0FVZ1_ARATH)"; NbS00022953g0006.1 protein AED:0.17 eAED:0.17 QI:167|0.66|0.25|1|0.33|0.5|4|0|698; (*GB) gi|380710177|gb|AFD98847.1| (e_value=0.0) vernalization insensitive 3 [Solanum lycopersicum];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=2e-95) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT4G30200.3 (e_value=0.0) | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | chr4:14786852-14790070 REVERSE LENGTH=702;; (*ITAG) Solyc07g018270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9970191-9981371 transcript_region:SL2.40ch07:9970191..9981371+ functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC); contains Interpro domain(s) IPR003961 Fibronectin, type III "; NbC25782575g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|305377032|dbj|BAJ15879.1| (e_value=6e-65) chlorophyll a/b binding protein-like protein [Torenia fournieri];; (*SWP) sp|P27491|CB27_TOBAC (e_value=2e-64) Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1;; (*TAIR) AT2G34430.1 (e_value=1e-59) | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266;; (*ITAG) Solyc03g005780.1.1 (e_value=3e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbC25816882g0004.1 protein AED:0.00 eAED:0.00 QI:233|1|1|1|1|1|3|605|268; (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=4e-57) nam-like protein 9 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-20) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10500.1 (e_value=2e-23) | Symbols: anac053, NAC053 | NAC domain containing protein 53 | chr3:3271718-3273887 FORWARD LENGTH=549;; (*ITAG) Solyc11g008000.1.1 (e_value=4e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2205263-2208572 transcript_region:SL2.40ch11:2205263..2208572- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00010168g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|147812026|emb|CAN65788.1| (e_value=1e-50) hypothetical protein VITISV_037591 [Vitis vinifera];; (*TAIR) AT1G70420.1 (e_value=2e-16) | Symbols: | Protein of unknown function (DUF1645) | chr1:26539840-26540658 REVERSE LENGTH=272;; (*ITAG) Solyc02g086810.1.1 (e_value=4e-61) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:44004622-44005443 transcript_region:SL2.40ch02:44004622..44005443+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00035790g0004.1 protein AED:0.08 eAED:0.09 QI:86|0|0|1|0.5|0.33|3|0|752; (*GB) gi|225431392|ref|XP_002272192.1| (e_value=7e-64) PREDICTED: uncharacterized protein LOC100259153 [Vitis vinifera];; (*TAIR) AT5G09840.1 (e_value=9e-38) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=4e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00044069g0004.1 protein AED:0.23 eAED:0.23 QI:182|1|0.66|1|1|1|3|416|213; (*GB) gi|156070778|gb|ABU45191.1| (e_value=2e-103) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|O49929|OEP24_PEA (e_value=3e-88) Outer envelope pore protein 24, chloroplastic OS=Pisum sativum GN=OEP24 PE=1 SV=1;; (*TAIR) AT1G45170.1 (e_value=1e-85) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=213;; (*ITAG) Solyc04g080190.2.1 (e_value=3e-84) genomic_reference:SL2.40ch04 gene_region:62042172-62045855 transcript_region:SL2.40ch04:62042172..62045855- functional_description:"Pore protein of (OEP24) (AHRD V1 **-- O49929_PEA)"; NbS00013958g0011.1 protein AED:0.06 eAED:0.09 QI:0|0|0.5|1|0|0|2|476|77 NbS00013958g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|255556618|ref|XP_002519343.1| (e_value=1e-63) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT1G48320.1 (e_value=1e-59) | Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156;; (*ITAG) Solyc03g006440.1.1 (e_value=2e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1038528-1039007 transcript_region:SL2.40ch03:1038528..1039007- go_terms:GO:0005515,GO:0016291 functional_description:"Thioesterase superfamily protein (AHRD V1 **-* C6C3W2_DICDC); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0005515,GO:0016291 NbS00013958g0013.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0.66|1|0.5|0.33|3|0|417; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=6e-124) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=9e-89) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT4G27460.1 (e_value=7e-90) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr4:13732939-13734263 FORWARD LENGTH=391;; (*ITAG) Solyc02g078480.2.1 (e_value=3e-173) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00013958g0009.1 protein AED:0.21 eAED:0.21 QI:149|1|1|1|1|1|2|256|333; (*GB) gi|350534880|ref|NP_001234676.1| (e_value=0.0) uncharacterized protein LOC543709 [Solanum lycopersicum];; (*SWP) sp|Q3ZBY7|DEGS1_BOVIN (e_value=2e-114) Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1;; (*TAIR) AT4G04930.1 (e_value=0.0) | Symbols: DES-1-LIKE | fatty acid desaturase family protein | chr4:2509236-2510918 FORWARD LENGTH=332;; (*ITAG) Solyc10g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3056358-3059101 transcript_region:SL2.40ch10:3056358..3059101+ go_terms:GO:0042284 functional_description:"Sphingolipid delta 4 desaturase (AHRD V1 **** Q5AJX2_CANAL); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site "; GO:0042284 NbS00036297g0008.1 protein AED:0.25 eAED:0.25 QI:0|1|0.6|1|1|1|5|8|445; (*GB) gi|255568155|ref|XP_002525053.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=7e-168) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc10g085990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64303655-64308110 transcript_region:SL2.40ch10:64303655..64308110- go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036297g0009.1 protein AED:0.39 eAED:0.41 QI:226|0.83|0.92|1|0.75|0.69|13|0|338; (*GB) gi|224068600|ref|XP_002326155.1| (e_value=8e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|P96554|Y319_MYXXA (e_value=3e-57) Uncharacterized membrane protein STKORF319 OS=Myxococcus xanthus PE=3 SV=1;; (*TAIR) AT5G12130.1 (e_value=1e-134) | Symbols: PDE149, ATTERC | integral membrane TerC family protein | chr5:3919613-3922154 FORWARD LENGTH=384;; (*ITAG) Solyc10g085980.1.1 (e_value=3e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64295092-64302759 transcript_region:SL2.40ch10:64295092..64302759+ go_terms:GO:0016021 functional_description:"Integral membrane protein TerC (AHRD V1 ***- A9B4B1_HERA2); contains Interpro domain(s) IPR005496 Integral membrane protein TerC "; GO:0016021 NbS00004357g0007.1 protein AED:0.49 eAED:0.49 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|148; (*GB) gi|350536447|ref|NP_001234247.1| (e_value=9e-107) ubiquitin-conjugating enzyme E2-17 kDa [Solanum lycopersicum];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=3e-108) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=4e-108) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc06g082600.2.1 (e_value=2e-109) genomic_reference:SL2.40ch06 gene_region:44657000-44661486 transcript_region:SL2.40ch06:44657000..44661486- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 **** Q2PYY4_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00004357g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|267; (*GB) gi|3065895|gb|AAC14323.1| (e_value=3e-135) TSI1 [Nicotiana tabacum];; (*SWP) sp|O04682|PTI6_SOLLC (e_value=3e-102) Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1;; (*TAIR) AT4G27950.1 (e_value=3e-32) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g082590.1.1 (e_value=2e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44653700-44654446 transcript_region:SL2.40ch06:44653700..44654446- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR017392 Pathogenesis-related genes transcriptional activator PTI6 "; GO:0003677,GO:0006355 NbS00021855g0006.1 protein AED:0.39 eAED:0.39 QI:126|1|0.75|1|0.66|1|4|0|140; (*GB) gi|82621170|gb|ABB86273.1| (e_value=1e-97) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=1e-95) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=5e-93) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00021855g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|433; (*GB) gi|225454014|ref|XP_002280967.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera];; (*SWP) sp|O81312|GAE3_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1;; (*TAIR) AT4G00110.1 (e_value=0.0) | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 | chr4:38702-39994 REVERSE LENGTH=430;; (*ITAG) Solyc10g018260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7214890-7216197 transcript_region:SL2.40ch10:7214890..7216197- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7M5S7_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00050844g0003.1 protein AED:0.04 eAED:0.04 QI:243|1|0.33|1|1|1|3|0|358; (*GB) gi|83283995|gb|ABC01905.1| (e_value=0.0) fructose-bisphosphate aldolase-like protein [Solanum tuberosum];; (*SWP) sp|P17784|ALF_ORYSJ (e_value=0.0) Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2;; (*TAIR) AT2G36460.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc09g009260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2643600-2645801 transcript_region:SL2.40ch09:2643600..2645801- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q2PYX3_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00013365g0013.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|250; (*GB) gi|224077756|ref|XP_002305395.1| (e_value=9e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4JL84|MYB59_ARATH (e_value=7e-47) Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2;; (*TAIR) AT3G30210.1 (e_value=2e-66) | Symbols: ATMYB121, MYB121 | myb domain protein 121 | chr3:11838567-11840313 FORWARD LENGTH=276;; (*ITAG) Solyc02g089190.1.1 (e_value=1e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45645551-45646453 transcript_region:SL2.40ch02:45645551..45646453+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LRU5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00013365g0014.1 protein AED:0.10 eAED:0.10 QI:323|0.66|0.85|1|0.5|0.28|7|249|208; (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=5e-105) MADS-box transcription factor FBP29 [Petunia x hybrida];; (*SWP) sp|Q42429|AGL8_SOLTU (e_value=4e-64) Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G60910.1 (e_value=3e-61) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242;; (*ITAG) Solyc02g089210.2.1 (e_value=8e-93) genomic_reference:SL2.40ch02 gene_region:45666857-45671596 transcript_region:SL2.40ch02:45666857..45671596+ go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00013365g0015.1 protein AED:0.25 eAED:0.25 QI:213|0.87|0.88|1|0.62|0.88|9|877|248; (*GB) gi|298204452|emb|CBI16932.3| (e_value=2e-121) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G38900.1 (e_value=1e-103) | Symbols: | Thioredoxin superfamily protein | chr5:15573745-15574945 REVERSE LENGTH=217;; (*ITAG) Solyc02g089230.2.1 (e_value=5e-156) genomic_reference:SL2.40ch02 gene_region:45678308-45681002 transcript_region:SL2.40ch02:45678308..45681002+ go_terms:GO:0003824 functional_description:"DSBA oxidoreductase family protein (AHRD V1 ***- D7MJT4_ARALY); contains Interpro domain(s) IPR001853 DSBA oxidoreductase "; GO:0003824 NbS00013365g0016.1 protein AED:0.25 eAED:0.25 QI:301|0.85|0.62|1|1|0.87|8|246|469; (*GB) gi|225451821|ref|XP_002281545.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera];; (*SWP) sp|Q5PQN1|HERC4_RAT (e_value=3e-29) Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1;; (*TAIR) AT3G02300.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:461551-463929 FORWARD LENGTH=471;; (*ITAG) Solyc02g089220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45671700-45676268 transcript_region:SL2.40ch02:45671700..45676268- go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00018919g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|65|351; (*GB) gi|147865633|emb|CAN83255.1| (e_value=3e-141) hypothetical protein VITISV_036981 [Vitis vinifera];; (*SWP) sp|O82199|C3H20_ARATH (e_value=7e-110) Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1;; (*TAIR) AT2G19810.1 (e_value=5e-111) | Symbols: | CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359;; (*ITAG) Solyc12g008660.1.1 (e_value=6e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00004235g0004.1 protein AED:0.11 eAED:0.11 QI:464|0.83|0.71|1|1|0.85|7|0|743; (*GB) gi|147855614|emb|CAN83465.1| (e_value=0.0) hypothetical protein VITISV_038667 [Vitis vinifera];; (*SWP) sp|Q9SJA4|CNG14_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2;; (*TAIR) AT2G24610.1 (e_value=0.0) | Symbols: ATCNGC14, CNGC14 | cyclic nucleotide-gated channel 14 | chr2:10457105-10460351 FORWARD LENGTH=726;; (*ITAG) Solyc08g069140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55418170-55422079 transcript_region:SL2.40ch08:55418170..55422079+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00011620g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|358248556|ref|NP_001240157.1| (e_value=1e-40) uncharacterized protein LOC100810081 [Glycine max];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=5e-35) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=4e-36) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc07g007950.1.1 (e_value=1e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2646086-2646754 transcript_region:SL2.40ch07:2646086..2646754+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011620g0012.1 protein AED:0.32 eAED:0.33 QI:0|0.78|0.66|1|0.57|0.6|15|226|651; (*GB) gi|225445585|ref|XP_002285365.1| (e_value=0.0) PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=1e-90) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT5G52580.1 (e_value=0.0) | Symbols: | RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=673;; (*ITAG) Solyc12g009610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2864130-2875362 transcript_region:SL2.40ch12:2864130..2875362- go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00011620g0014.1 protein AED:0.15 eAED:0.15 QI:148|0.75|0.8|1|1|0.8|5|483|166; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=5e-26) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.3 (e_value=9e-22) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=265;; (*ITAG) Solyc12g009620.1.1 (e_value=1e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2884183-2890685 transcript_region:SL2.40ch12:2884183..2890685+ functional_description:"CUE domain containing protein (AHRD V1 ***- B6TIC6_MAIZE)"; NbS00059309g0001.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|99 NbS00031808g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|166; (*ITAG) Solyc02g043820.1.1 (e_value=5e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033413g0010.1 protein AED:0.08 eAED:0.11 QI:0|0.91|0.84|1|0.75|0.69|13|0|428; (*GB) gi|359490377|ref|XP_002263340.2| (e_value=0.0) PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera];; (*SWP) sp|Q9M2Z3|GENL2_ARATH (e_value=0.0) Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2 SV=2;; (*TAIR) AT3G48900.2 (e_value=0.0) | Symbols: | single-stranded DNA endonuclease family protein | chr3:18131854-18136239 FORWARD LENGTH=600;; (*ITAG) Solyc03g025900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7694511-7700542 transcript_region:SL2.40ch03:7694511..7700542- go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-*- A8NTE4_COPC7); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00033413g0009.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|0|1|2|25|81; (*GB) gi|297745210|emb|CBI40290.3| (e_value=1e-44) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G00585.1 (e_value=3e-44) | Symbols: | unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:251157-252284 REVERSE LENGTH=88;; (*ITAG) Solyc03g025910.2.1 (e_value=1e-45) genomic_reference:SL2.40ch03 gene_region:7702186-7707084 transcript_region:SL2.40ch03:7702186..7707084- functional_description:"Unknown Protein (AHRD V1)"; NbS00027887g0002.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|1|1|2|0|183; (*GB) gi|350539946|ref|NP_001233821.1| (e_value=1e-70) TCP transcription factor 19 [Solanum lycopersicum];; (*SWP) sp|Q9SJK7|TCP11_ARATH (e_value=5e-32) Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1;; (*TAIR) AT2G37000.1 (e_value=3e-33) | Symbols: | TCP family transcription factor | chr2:15540390-15540956 FORWARD LENGTH=188;; (*ITAG) Solyc09g008030.1.1 (e_value=2e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1505098-1505703 transcript_region:SL2.40ch09:1505098..1505703- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00027887g0013.1 protein AED:0.15 eAED:0.15 QI:83|0.9|0.72|0.90|0.6|0.63|11|307|364; (*GB) gi|225435383|ref|XP_002282609.1| (e_value=8e-126) PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera];; (*SWP) sp|Q54P70|Y4757_DICDI (e_value=2e-22) OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2;; (*TAIR) AT5G04250.2 (e_value=1e-92) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc09g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1499865-1504313 transcript_region:SL2.40ch09:1499865..1504313+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00027887g0009.1 protein AED:0.16 eAED:0.18 QI:185|0.7|0.72|1|0.8|0.72|11|495|605; (*GB) gi|297741628|emb|CBI32760.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=2e-69) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT2G36990.1 (e_value=4e-152) | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547;; (*ITAG) Solyc09g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1508019-1514485 transcript_region:SL2.40ch09:1508019..1514485+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 ***- D7LJA3_ARALY); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00027887g0014.1 protein AED:0.63 eAED:0.63 QI:216|0|0.5|1|1|0.5|2|0|125; (*GB) gi|359481541|ref|XP_002276673.2| (e_value=2e-42) PREDICTED: probable receptor-like protein kinase At5g15080-like [Vitis vinifera];; (*TAIR) AT3G09830.2 (e_value=4e-30) | Symbols: | Protein kinase superfamily protein | chr3:3017199-3018696 FORWARD LENGTH=418;; (*ITAG) Solyc09g008010.2.1 (e_value=2e-57) genomic_reference:SL2.40ch09 gene_region:1486900-1491959 transcript_region:SL2.40ch09:1486900..1491959+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00006704g0006.1 protein AED:0.00 eAED:0.00 QI:253|1|1|1|0.75|1|5|496|424; (*GB) gi|225449309|ref|XP_002281465.1| (e_value=6e-61) PREDICTED: uncharacterized protein LOC100256408 [Vitis vinifera];; (*ITAG) Solyc10g084970.1.1 (e_value=8e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63649834-63651609 transcript_region:SL2.40ch10:63649834..63651609+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006704g0210.1 protein AED:0.00 eAED:0.00 QI:161|1|1|1|1|1|2|0|120 NbS00040116g0005.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=2e-26) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|A0AT30|NLTP3_LENCU (e_value=5e-22) Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1;; (*TAIR) AT4G33355.1 (e_value=1e-17) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc02g087910.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44745206-44745565 transcript_region:SL2.40ch02:44745206..44745565+ go_terms:GO:0005516 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9SMA5_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516 NbS00040116g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.4|1|0.75|0.6|5|280|768; (*GB) gi|225452781|ref|XP_002283300.1| (e_value=0.0) PREDICTED: cullin-3B [Vitis vinifera];; (*SWP) sp|Q9ZVH4|CUL3A_ARATH (e_value=0.0) Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1;; (*TAIR) AT1G26830.1 (e_value=0.0) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732;; (*ITAG) Solyc02g087900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44740242-44744447 transcript_region:SL2.40ch02:44740242..44744447+ go_terms:GO:0030332 functional_description:"Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00040116g0001.1 protein AED:0.06 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|345|91; (*ITAG) Solyc02g087890.2.1 (e_value=5e-32) genomic_reference:SL2.40ch02 gene_region:44732392-44733265 transcript_region:SL2.40ch02:44732392..44733265- functional_description:"Unknown Protein (AHRD V1)"; NbS00024326g0011.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|649; (*GB) gi|359484243|ref|XP_002273499.2| (e_value=5e-160) PREDICTED: uncharacterized protein LOC100257766 [Vitis vinifera];; (*SWP) sp|Q7Y201|PME13_ARATH (e_value=8e-139) Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2;; (*TAIR) AT2G26450.1 (e_value=6e-140) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614;; (*ITAG) Solyc07g017560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7530533-7533336 transcript_region:SL2.40ch07:7530533..7533336- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RR24_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00012244g0011.1 protein AED:0.09 eAED:0.10 QI:1296|0.80|0.63|1|0.80|0.77|22|512|1908; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=0.0) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q03460|GLSN_MEDSA (e_value=0.0) Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1;; (*TAIR) AT5G53460.3 (e_value=0.0) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00012244g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|0.5|1|1|2|552|143; (*GB) gi|356520577|ref|XP_003528938.1| (e_value=3e-21) PREDICTED: UPF0369 protein C6orf57-like [Glycine max];; (*TAIR) AT5G67490.1 (e_value=1e-13) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26934368-26934694 REVERSE LENGTH=108;; (*ITAG) Solyc03g083450.1.1 (e_value=2e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:46899102-46899437 transcript_region:SL2.40ch03:46899102..46899437+ go_terms:GO:0005515 functional_description:"UPF0369 protein C6orf57 (AHRD V1 -*-- CF057_HUMAN); contains Interpro domain(s) IPR012875 Protein of unknown function DUF1674 "; GO:0005515 NbS00012244g0003.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|81; (*GB) gi|121489775|emb|CAK18859.1| (e_value=2e-21) Putative RING-H2 finger protein precursor [Phillyrea latifolia];; (*TAIR) AT5G53110.1 (e_value=2e-18) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc03g083460.2.1 (e_value=6e-32) genomic_reference:SL2.40ch03 gene_region:46900432-46904401 transcript_region:SL2.40ch03:46900432..46904401+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018177g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|140 NbS00017135g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|70 NbS00013172g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|283; (*GB) gi|225439592|ref|XP_002265892.1| (e_value=9e-161) PREDICTED: sex determination protein tasselseed-2-like [Vitis vinifera];; (*SWP) sp|P50160|TS2_MAIZE (e_value=1e-119) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=5e-129) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc10g085380.1.1 (e_value=5e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63909641-63910974 transcript_region:SL2.40ch10:63909641..63910974+ go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4Y6_ZEALU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00013172g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|0.75|0.6|5|0|403; (*GB) gi|255571497|ref|XP_002526696.1| (e_value=1e-140) protein phosphatase-2c, putative [Ricinus communis];; (*SWP) sp|Q2RBJ6|P2C73_ORYSJ (e_value=4e-106) Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1;; (*TAIR) AT5G01700.2 (e_value=2e-107) | Symbols: | Protein phosphatase 2C family protein | chr5:260848-262492 REVERSE LENGTH=382;; (*ITAG) Solyc10g085370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63896009-63899267 transcript_region:SL2.40ch10:63896009..63899267- go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- A6NA79_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00013172g0011.1 protein AED:0.08 eAED:0.08 QI:79|1|0.87|1|0.57|0.5|8|522|429; (*GB) gi|225439558|ref|XP_002264808.1| (e_value=8e-122) PREDICTED: uncharacterized protein LOC100267149 [Vitis vinifera];; (*SWP) sp|P37707|B2_DAUCA (e_value=2e-31) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G01660.1 (e_value=1e-82) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc10g076330.1.1 (e_value=2e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58574547-58578026 transcript_region:SL2.40ch10:58574547..58578026+ functional_description:"Kelch-like protein (AHRD V1 ***- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00060365g0003.1 protein AED:0.11 eAED:0.11 QI:113|0|0.4|0.6|0.75|0.6|5|498|105; (*ITAG) Solyc04g079290.2.1 (e_value=8e-14) genomic_reference:SL2.40ch04 gene_region:61391519-61394711 transcript_region:SL2.40ch04:61391519..61394711+ go_terms:GO:0020037 functional_description:"Heme oxygenase 2 (AHRD V1 **** Q94FW6_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant "; GO:0020037 NbS00034832g0002.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.16|1|1|6|0|309 NbS00037070g0011.1 protein AED:0.08 eAED:0.08 QI:143|0.83|0.85|1|0.33|0.28|7|450|163; (*GB) gi|81074849|gb|ABB55377.1| (e_value=4e-80) transcription factor NF-Y CCAAT-binding-like protein-like [Solanum tuberosum];; (*SWP) sp|Q67XJ2|NFYBA_ARATH (e_value=1e-67) Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1;; (*TAIR) AT3G53340.1 (e_value=7e-69) | Symbols: NF-YB10 | nuclear factor Y, subunit B10 | chr3:19774667-19775991 REVERSE LENGTH=176;; (*ITAG) Solyc04g049910.2.1 (e_value=2e-82) genomic_reference:SL2.40ch04 gene_region:43871375-43875010 transcript_region:SL2.40ch04:43871375..43875010+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6UBN3_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00037070g0010.1 protein AED:0.24 eAED:0.25 QI:63|0.8|0.63|1|0.8|0.72|11|330|814; (*GB) gi|356542573|ref|XP_003539741.1| (e_value=1e-94) PREDICTED: uncharacterized protein LOC100801880 [Glycine max];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=1e-34) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=4e-88) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc04g009510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2930038-2938296 transcript_region:SL2.40ch04:2930038..2938296+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00012965g0005.1 protein AED:0.14 eAED:0.14 QI:539|0.85|0.75|1|0.85|0.75|8|341|519; (*GB) gi|309401691|gb|ADO79931.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana tabacum];; (*SWP) sp|Q38873|CDPK7_ARATH (e_value=0.0) Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=1 SV=1;; (*TAIR) AT5G12480.1 (e_value=0.0) | Symbols: CPK7 | calmodulin-domain protein kinase 7 | chr5:4047817-4050035 REVERSE LENGTH=535;; (*ITAG) Solyc10g079130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60064941-60068542 transcript_region:SL2.40ch10:60064941..60068542- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00010210g0001.1 protein AED:0.30 eAED:0.57 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-16) hypothetical protein [Nicotiana tabacum]; NbS00010210g0009.1 protein AED:0.41 eAED:0.55 QI:0|0|0|1|0|0|4|0|138; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-24) hypothetical protein [Nicotiana tabacum]; NbS00027430g0009.1 protein AED:0.12 eAED:0.20 QI:83|0|0.5|1|0|0|2|0|247; (*GB) gi|255581317|ref|XP_002531469.1| (e_value=1e-65) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SKK8|ATL22_ARATH (e_value=1e-15) RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2;; (*TAIR) AT2G25410.1 (e_value=1e-16) | Symbols: | RING/U-box superfamily protein | chr2:10814470-10815917 FORWARD LENGTH=377;; (*ITAG) Solyc08g078230.2.1 (e_value=3e-74) genomic_reference:SL2.40ch08 gene_region:59227078-59235040 transcript_region:SL2.40ch08:59227078..59235040+ go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7MH91_ARALY); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0008270 NbS00027430g0006.1 protein AED:0.32 eAED:0.32 QI:160|1|1|1|0|0.4|5|388|221; (*GB) gi|224138684|ref|XP_002326664.1| (e_value=3e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-103) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT5G47310.1 (e_value=3e-105) | Symbols: | PPPDE putative thiol peptidase family protein | chr5:19201325-19202674 FORWARD LENGTH=245;; (*ITAG) Solyc08g078220.2.1 (e_value=4e-138) genomic_reference:SL2.40ch08 gene_region:59218203-59228729 transcript_region:SL2.40ch08:59218203..59228729+ functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_MOUSE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00002915g0009.1 protein AED:0.01 eAED:0.01 QI:209|1|1|1|0.33|0.25|4|159|449; (*GB) gi|297744881|emb|CBI38340.3| (e_value=1e-137) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5J4|Y3210_ARATH (e_value=9e-103) BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1;; (*TAIR) AT3G22104.1 (e_value=7e-104) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:7789814-7792179 FORWARD LENGTH=506;; (*ITAG) Solyc02g079860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38849489-38851031 transcript_region:SL2.40ch02:38849489..38851031- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00002915g0010.1 protein AED:0.19 eAED:0.23 QI:97|1|0.66|1|0.5|0.33|3|0|1102; (*GB) gi|359496575|ref|XP_002271481.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263747 [Vitis vinifera];; (*SWP) sp|O13821|VPS27_SCHPO (e_value=3e-14) Vacuolar protein sorting-associated protein 27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sst4 PE=2 SV=1;; (*TAIR) AT1G61690.1 (e_value=1e-169) | Symbols: | phosphoinositide binding | chr1:22782825-22786782 REVERSE LENGTH=1171;; (*ITAG) Solyc02g079850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38834430-38837925 transcript_region:SL2.40ch02:38834430..38837925- go_terms:GO:0008270 functional_description:"Pleckstrin homology domain-containing family F member 2 (AHRD V1 *--- PKHF2_DANRE); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0008270 NbS00002915g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|0.8|0.83|6|0|520; (*GB) gi|348659061|gb|AEP82768.1| (e_value=0.0) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=0.0) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25830.1 (e_value=3e-167) | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600;; (*ITAG) Solyc02g079840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38831335-38833880 transcript_region:SL2.40ch02:38831335..38833880+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00019223g0009.1 protein AED:0.26 eAED:0.26 QI:245|1|1|1|1|1|4|313|331; (*GB) gi|13560781|gb|AAK30204.1|AF349963_1 (e_value=0.0) endoxyloglucan transferase [Daucus carota];; (*SWP) sp|Q38909|XTH28_ARATH (e_value=2e-157) Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1;; (*TAIR) AT1G14720.1 (e_value=2e-158) | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan endotransglucosylase/hydrolase 28 | chr1:5066806-5068466 REVERSE LENGTH=332;; (*ITAG) Solyc01g005120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:104191-107414 transcript_region:SL2.40ch01:104191..107414- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 13 (AHRD V1 **** C0IRH2_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00014166g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|225441508|ref|XP_002280441.1| (e_value=2e-96) PREDICTED: transmembrane and coiled-coil domains protein 1 [Vitis vinifera];; (*SWP) sp|Q5I0H4|TMCO1_RAT (e_value=7e-50) Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1;; (*TAIR) AT5G06660.1 (e_value=6e-94) | Symbols: | Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196;; (*ITAG) Solyc10g079000.1.1 (e_value=2e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59971409-59971993 transcript_region:SL2.40ch10:59971409..59971993- functional_description:"Transmembrane and coiled-coil domain-containing protein 1 (AHRD V1 ***- B0WCQ4_CULQU); contains Interpro domain(s) IPR008559 Protein of unknown function DUF841, eukaryotic "; NbS00014166g0016.1 protein AED:0.31 eAED:0.32 QI:0|0.68|0.58|0.82|0.62|0.70|17|0|816; (*GB) gi|297739808|emb|CBI29990.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=5e-59) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT3G12020.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3827016-3834146 FORWARD LENGTH=965;; (*ITAG) Solyc03g053100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20165903-20176906 transcript_region:SL2.40ch03:20165903..20176906+ functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH)"; NbS00014166g0109.1 protein AED:0.21 eAED:0.21 QI:170|0.78|0.8|0.93|0.78|0.8|15|459|820 NbS00001270g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|218855180|gb|ACL12055.1| (e_value=5e-126) Kunitz trypsin inhibitor [Nicotiana tabacum];; (*SWP) sp|P13087|MIRA_RICDU (e_value=2e-56) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=6e-63) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc06g072220.1.1 (e_value=1e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40896228-40896863 transcript_region:SL2.40ch06:40896228..40896863+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz trypsin inhibitor (AHRD V1 **** B8Y888_TOBAC); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00039382g0006.1 protein AED:0.18 eAED:0.20 QI:0|0.37|0.55|1|0.62|0.77|9|0|508; (*GB) gi|225441183|ref|XP_002266033.1| (e_value=4e-124) PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera];; (*TAIR) AT5G03450.1 (e_value=2e-76) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630;; (*ITAG) Solyc09g008330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00016240g0009.1 protein AED:0.09 eAED:0.11 QI:1|0.85|0.5|1|0.71|0.62|8|414|1090; (*GB) gi|222623514|gb|EEE57646.1| (e_value=0.0) hypothetical protein OsJ_08074 [Oryza sativa Japonica Group];; (*SWP) sp|Q60560|SMBP2_MESAU (e_value=3e-95) DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1;; (*TAIR) AT5G35970.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:14119060-14123078 REVERSE LENGTH=961;; (*ITAG) Solyc03g097370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53129345-53136544 transcript_region:SL2.40ch03:53129345..53136544- go_terms:GO:0043141 functional_description:"DNA helicase-like (AHRD V1 **** Q9FGC2_ARATH); contains Interpro domain(s) IPR003593 ATPase, AAA+ type, core "; GO:0043141 NbS00057316g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|342; (*GB) gi|111378451|gb|ABH09237.1| (e_value=0.0) CONSTANS-like protein [Solanum tuberosum];; (*SWP) sp|Q940T9|COL4_ARATH (e_value=3e-101) Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2;; (*TAIR) AT5G24930.1 (e_value=1e-101) | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589325-8590949 FORWARD LENGTH=406;; (*ITAG) Solyc12g096500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63736405-63737572 transcript_region:SL2.40ch12:63736405..63737572+ go_terms:GO:0005622 functional_description:"CONSTANS-like protein (AHRD V1 ***- Q0MQL9_SOLTU); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00033104g0014.1 protein AED:0.17 eAED:0.17 QI:31|0.5|0.33|1|1|1|3|0|218; (*GB) gi|225452607|ref|XP_002275992.1| (e_value=1e-84) PREDICTED: thaumatin-like protein-like [Vitis vinifera];; (*SWP) sp|Q41350|OLP1_SOLLC (e_value=5e-42) Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT5G40020.1 (e_value=1e-81) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:16022896-16024294 REVERSE LENGTH=256;; (*ITAG) Solyc02g087520.2.1 (e_value=7e-124) genomic_reference:SL2.40ch02 gene_region:44511588-44513432 transcript_region:SL2.40ch02:44511588..44513432+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9FLU2_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00033104g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|359486177|ref|XP_002267418.2| (e_value=6e-28) PREDICTED: mitochondrial chaperone BCS1 isoform 1 [Vitis vinifera];; (*TAIR) AT5G40010.1 (e_value=8e-20) | Symbols: AATP1 | AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514;; (*ITAG) Solyc02g087540.1.1 (e_value=1e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44517202-44518761 transcript_region:SL2.40ch02:44517202..44518761- go_terms:GO:0016887 functional_description:"Cell division AAA ATPase family protein (AHRD V1 **-* B6Z265_WHEAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00033104g0023.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|1|1|3|0|613; (*GB) gi|224138190|ref|XP_002322752.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=2e-118) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=2e-119) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc02g087500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44500692-44502990 transcript_region:SL2.40ch02:44500692..44502990- go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00033104g0003.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|475; (*GB) gi|359488753|ref|XP_002275823.2| (e_value=2e-139) PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=1e-17) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT3G28510.1 (e_value=2e-134) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10685656-10687248 FORWARD LENGTH=530;; (*ITAG) Solyc02g087540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44517202-44518761 transcript_region:SL2.40ch02:44517202..44518761- go_terms:GO:0016887 functional_description:"Cell division AAA ATPase family protein (AHRD V1 **-* B6Z265_WHEAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00033104g0022.1 protein AED:0.15 eAED:0.17 QI:0|0.44|0.2|1|0.33|0.2|10|0|265; (*GB) gi|215490183|dbj|BAG86625.1| (e_value=8e-125) type 2 proly 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P54001|P4HA1_RAT (e_value=1e-17) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT3G28480.1 (e_value=9e-111) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr3:10676266-10678262 REVERSE LENGTH=316;; (*ITAG) Solyc02g067530.2.1 (e_value=3e-131) genomic_reference:SL2.40ch02 gene_region:32274270-32278858 transcript_region:SL2.40ch02:32274270..32278858+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00033104g0024.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0.33|3|0|218; (*GB) gi|255552792|ref|XP_002517439.1| (e_value=1e-15) serine/threonine protein kinase, putative [Ricinus communis];; (*ITAG) Solyc02g087510.2.1 (e_value=6e-67) genomic_reference:SL2.40ch02 gene_region:44505162-44507429 transcript_region:SL2.40ch02:44505162..44507429- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-2 (AHRD V1 *-** KS6A2_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00033104g0020.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|276; (*GB) gi|296087768|emb|CBI35024.3| (e_value=4e-80) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G28570.1 (e_value=6e-80) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10710534-10711889 FORWARD LENGTH=451;; (*ITAG) Solyc02g087540.1.1 (e_value=4e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44517202-44518761 transcript_region:SL2.40ch02:44517202..44518761- go_terms:GO:0016887 functional_description:"Cell division AAA ATPase family protein (AHRD V1 **-* B6Z265_WHEAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00057529g0003.1 protein AED:0.36 eAED:0.36 QI:122|0.75|0.8|1|1|1|5|159|289; (*GB) gi|359490916|ref|XP_002274302.2| (e_value=5e-130) PREDICTED: 2-aminoethanethiol dioxygenase-like [Vitis vinifera];; (*SWP) sp|Q556I2|AEDO_DICDI (e_value=2e-16) Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum GN=ado-1 PE=3 SV=2;; (*TAIR) AT1G18490.1 (e_value=1e-106) | Symbols: | Protein of unknown function (DUF1637) | chr1:6367116-6368640 FORWARD LENGTH=282;; (*ITAG) Solyc03g114510.2.1 (e_value=2e-165) genomic_reference:SL2.40ch03 gene_region:58542886-58547927 transcript_region:SL2.40ch03:58542886..58547927- go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- Q2HVC5_MEDTR); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00004388g0032.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.33|3|0|367; (*GB) gi|359483198|ref|XP_002271405.2| (e_value=2e-69) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-42) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=3e-43) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc06g006040.1.1 (e_value=8e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00004388g0027.1 protein AED:0.30 eAED:0.30 QI:0|0.16|0.14|1|0.5|0.42|7|0|917; (*GB) gi|147853795|emb|CAN81714.1| (e_value=0.0) hypothetical protein VITISV_005816 [Vitis vinifera];; (*SWP) sp|C0LGT6|EFR_ARATH (e_value=1e-116) LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1;; (*TAIR) AT3G47090.1 (e_value=1e-126) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17341512-17344645 REVERSE LENGTH=1009;; (*ITAG) Solyc06g006040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00004388g0038.1 protein AED:0.27 eAED:0.35 QI:0|0.4|0.16|1|0.6|0.5|6|0|1195; (*GB) gi|359485453|ref|XP_003633276.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|Q9SHI2|Y1723_ARATH (e_value=5e-130) Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2;; (*TAIR) AT1G17230.1 (e_value=4e-131) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:5891375-5894855 FORWARD LENGTH=1101;; (*ITAG) Solyc06g006040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00004388g0037.1 protein AED:0.39 eAED:0.41 QI:0|0.25|0|0.55|1|1|9|0|658; (*ITAG) Solyc08g074530.1.1 (e_value=5e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00004388g0026.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|224056581|ref|XP_002298921.1| (e_value=5e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUD6|PP230_ARATH (e_value=1e-73) Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1;; (*TAIR) AT3G14580.1 (e_value=7e-75) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4903012-4904229 FORWARD LENGTH=405;; (*ITAG) Solyc10g007520.1.1 (e_value=9e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1846321-1847484 transcript_region:SL2.40ch10:1846321..1847484+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004388g0033.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|0.2|0.33|6|0|385; (*GB) gi|359483198|ref|XP_002271405.2| (e_value=2e-63) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGV1|RCH1_ARATH (e_value=3e-35) LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1;; (*TAIR) AT5G48940.1 (e_value=2e-36) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:19839785-19843744 FORWARD LENGTH=1135;; (*ITAG) Solyc02g068820.1.1 (e_value=2e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004388g0015.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.75|1|0.33|0.25|4|411|73; (*ITAG) Solyc10g007520.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1846321-1847484 transcript_region:SL2.40ch10:1846321..1847484+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004388g0041.1 protein AED:0.42 eAED:0.47 QI:0|0|0|1|0|0|2|0|149; (*GB) gi|224056581|ref|XP_002298921.1| (e_value=8e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUD6|PP230_ARATH (e_value=2e-34) Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1;; (*TAIR) AT3G14580.1 (e_value=1e-35) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4903012-4904229 FORWARD LENGTH=405;; (*ITAG) Solyc10g007520.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1846321-1847484 transcript_region:SL2.40ch10:1846321..1847484+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004388g0039.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|76 NbS00009830g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|176; (*GB) gi|147826932|emb|CAN68873.1| (e_value=2e-84) hypothetical protein VITISV_026576 [Vitis vinifera];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=5e-76) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=4e-77) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc06g082310.2.1 (e_value=6e-97) genomic_reference:SL2.40ch06 gene_region:44463336-44464540 transcript_region:SL2.40ch06:44463336..44464540- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00009830g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|0.5|0.66|3|381|328; (*GB) gi|359478542|ref|XP_003632130.1| (e_value=1e-175) PREDICTED: mitoferrin-like [Vitis vinifera];; (*SWP) sp|Q55DY8|MFRN_DICDI (e_value=2e-65) Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1;; (*TAIR) AT2G30160.1 (e_value=2e-159) | Symbols: | Mitochondrial substrate carrier family protein | chr2:12878016-12879377 FORWARD LENGTH=331;; (*ITAG) Solyc06g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44454789-44458090 transcript_region:SL2.40ch06:44454789..44458090- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- O82049_RIBNI); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00004888g0006.1 protein AED:0.24 eAED:0.24 QI:430|0.84|0.85|1|0.92|0.92|14|678|548; (*GB) gi|62183958|gb|AAX73299.1| (e_value=0.0) putative permease I [Solanum lycopersicum];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc12g026430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:16710135-16716399 transcript_region:SL2.40ch12:16710135..16716399+ go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-- B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00004888g0005.1 protein AED:0.45 eAED:0.53 QI:0|0|0|0.5|0|0.5|2|0|70; (*ITAG) Solyc01g059760.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004888g0103.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|1|1|2|0|94 NbS00004888g0104.1 protein AED:0.47 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|70 NbS00022388g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|179; (*ITAG) Solyc07g045590.1.1 (e_value=9e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56065223-56065627 transcript_region:SL2.40ch07:56065223..56065627- functional_description:"Tracheary element differentiation-related 6 (AHRD V1 --*- C1PGW0_ZINEL)"; NbS00022388g0009.1 protein AED:0.24 eAED:0.24 QI:489|0.88|0.8|1|0.55|0.7|10|0|452; (*GB) gi|225457767|ref|XP_002278193.1| (e_value=0.0) PREDICTED: serine carboxypeptidase-like 42 [Vitis vinifera];; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=0.0) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1;; (*TAIR) AT5G42240.1 (e_value=0.0) | Symbols: scpl42 | serine carboxypeptidase-like 42 | chr5:16888717-16890931 FORWARD LENGTH=473;; (*ITAG) Solyc04g064760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55019440-55023522 transcript_region:SL2.40ch04:55019440..55023522- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00022388g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.6|1|0.5|0.2|5|72|408; (*GB) gi|356515979|ref|XP_003526674.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100802445 [Glycine max];; (*TAIR) AT1G48880.1 (e_value=3e-140) | Symbols: TBL7 | TRICHOME BIREFRINGENCE-LIKE 7 | chr1:18081033-18082650 FORWARD LENGTH=445;; (*ITAG) Solyc04g064740.2.1 (e_value=2e-161) genomic_reference:SL2.40ch04 gene_region:55001150-55004007 transcript_region:SL2.40ch04:55001150..55004007- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00050763g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|1|1|3|397|215; (*GB) gi|6288682|gb|AAF06696.1|AF031487_1 (e_value=2e-130) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=3e-110) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT5G06950.4 (e_value=5e-110) | Symbols: AHBP-1B, TGA2 | bZIP transcription factor family protein | chr5:2152323-2154174 FORWARD LENGTH=330;; (*ITAG) Solyc11g064950.1.1 (e_value=3e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00050763g0007.1 protein AED:0.07 eAED:0.07 QI:102|1|0|1|1|1|2|0|367; (*GB) gi|224471665|dbj|BAH10700.2| (e_value=0.0) GDP-mannose 4,6-dehydratase [Nicotiana benthamiana];; (*SWP) sp|P93031|GMD2_ARATH (e_value=0.0) GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3;; (*TAIR) AT3G51160.1 (e_value=0.0) | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19007232-19008353 REVERSE LENGTH=373;; (*ITAG) Solyc03g118270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61240383-61241474 transcript_region:SL2.40ch03:61240383..61241474+ go_terms:GO:0008446 functional_description:"GDP-mannose 4 6-dehydratase (AHRD V1 **** B7XH28_NICBE); contains Interpro domain(s) IPR006368 GDP-mannose 4,6-dehydratase "; GO:0008446 NbS00030213g0015.1 protein AED:0.02 eAED:0.02 QI:197|0.8|0.83|1|0.8|0.66|6|397|540; (*GB) gi|225448513|ref|XP_002273153.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248416 [Vitis vinifera];; (*SWP) sp|Q54CV5|BUB1_DICDI (e_value=4e-21) Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1;; (*TAIR) AT5G05510.1 (e_value=4e-154) | Symbols: | Mad3/BUB1 homology region 1 | chr5:1630651-1632568 REVERSE LENGTH=471;; (*ITAG) Solyc06g051040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30628842-30632716 transcript_region:SL2.40ch06:30628842..30632716- functional_description:"Mitotic checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- BUB1_MOUSE); contains Interpro domain(s) IPR013212 Mad3/BUB1 homology region 1 "; NbS00030213g0016.1 protein AED:0.21 eAED:0.22 QI:0|0.88|0.7|1|0.66|0.8|10|0|740; (*GB) gi|225448517|ref|XP_002273218.1| (e_value=2e-163) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Vitis vinifera];; (*SWP) sp|C0LGQ4|MRH1_ARATH (e_value=3e-124) Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1;; (*TAIR) AT4G18640.1 (e_value=2e-125) | Symbols: MRH1 | Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678;; (*ITAG) Solyc06g051030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30621752-30627124 transcript_region:SL2.40ch06:30621752..30627124+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002425g0011.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0.2|1|0.5|0.8|5|0|476; (*GB) gi|21064945|gb|AAM29184.1| (e_value=0.0) CDPK-like protein [Solanum tuberosum];; (*SWP) sp|Q42479|CDPK3_ARATH (e_value=3e-62) Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1;; (*TAIR) AT1G12580.1 (e_value=4e-131) | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase-related kinase 1 | chr1:4283635-4285675 FORWARD LENGTH=522;; (*ITAG) Solyc03g026340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8152768-8157216 transcript_region:SL2.40ch03:8152768..8157216- go_terms:GO:0004697 functional_description:"Calcium dependent protein kinase 17 (AHRD V1 *-** D8RHF3_SELML); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004697 NbS00002425g0015.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0.75|0.88|9|560|440; (*GB) gi|225455491|ref|XP_002280396.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 48 [Vitis vinifera];; (*SWP) sp|Q9FNZ2|C3H48_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1;; (*TAIR) AT4G25440.1 (e_value=0.0) | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1 | chr4:13007107-13009381 REVERSE LENGTH=430;; (*ITAG) Solyc03g026350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8163707-8171791 transcript_region:SL2.40ch03:8163707..8171791+ go_terms:GO:0008270 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MJ15_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00002425g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.52|0.66|0.88|0.94|0.88|18|923|670; (*GB) gi|359490406|ref|XP_002280266.2| (e_value=0.0) PREDICTED: ABC transporter B family member 28-like [Vitis vinifera];; (*SWP) sp|Q8LPQ6|AB28B_ARATH (e_value=0.0) ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1;; (*TAIR) AT4G25450.1 (e_value=0.0) | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein 8 | chr4:13009845-13013912 REVERSE LENGTH=714;; (*ITAG) Solyc03g026310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8122351-8133100 transcript_region:SL2.40ch03:8122351..8133100+ go_terms:GO:0046982 functional_description:"ABC transporter permease/ATP-binding protein (AHRD V1 ***- A6ANR0_VIBHA); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0046982 NbS00002425g0016.1 protein AED:0.26 eAED:0.47 QI:208|0|0.5|1|0|0|2|48|52 NbS00002425g0108.1 protein AED:0.03 eAED:0.03 QI:245|1|1|1|0.75|1|5|359|342 NbS00002425g0103.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|219 NbS00002425g0102.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|130 NbS00044415g0001.1 protein AED:0.32 eAED:0.36 QI:151|0.5|0.55|1|1|1|9|0|457; (*GB) gi|225429906|ref|XP_002283676.1| (e_value=0.0) PREDICTED: monoglyceride lipase [Vitis vinifera];; (*TAIR) AT5G11650.1 (e_value=7e-147) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:3745069-3746816 FORWARD LENGTH=390;; (*ITAG) Solyc08g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52277630-52281785 transcript_region:SL2.40ch08:52277630..52281785- go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00021862g0011.1 protein AED:0.23 eAED:0.23 QI:31|0.8|0.5|1|0.6|0.83|6|706|328; (*GB) gi|359486048|ref|XP_002270184.2| (e_value=1e-160) PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WVV0|PPR31_ARATH (e_value=5e-137) Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1;; (*TAIR) AT1G10910.1 (e_value=4e-138) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3639908-3643974 FORWARD LENGTH=664;; (*ITAG) Solyc11g040260.1.1 (e_value=3e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:30326314-30332510 transcript_region:SL2.40ch11:30326314..30332510+ functional_description:"Pentatricopeptide repeat-containing protein At1g10910, chloroplastic (AHRD V1 ***- PPR31_ARATH)"; NbS00021862g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|220; (*GB) gi|359486048|ref|XP_002270184.2| (e_value=3e-88) PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WVV0|PPR31_ARATH (e_value=7e-83) Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1;; (*TAIR) AT1G10910.1 (e_value=5e-84) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3639908-3643974 FORWARD LENGTH=664;; (*ITAG) Solyc11g040240.1.1 (e_value=2e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30306489-30315715 transcript_region:SL2.40ch11:30306489..30315715+ functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q3S7_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012349g0007.1 protein AED:0.10 eAED:0.10 QI:161|0.89|0.8|1|0.84|0.85|20|359|1385; (*GB) gi|225437885|ref|XP_002265367.1| (e_value=0.0) PREDICTED: CLIP-associating protein-like [Vitis vinifera];; (*SWP) sp|A1A5K2|CLA1B_XENLA (e_value=2e-33) CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1;; (*TAIR) AT2G20190.1 (e_value=0.0) | Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439;; (*ITAG) Solyc06g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1887416-1904125 transcript_region:SL2.40ch06:1887416..1904125- go_terms:GO:0005488 functional_description:"CLIP-associating protein 1-like (AHRD V1 *--- Q6KAI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016412g0001.1 protein AED:0.20 eAED:0.20 QI:34|1|0.5|1|1|1|2|0|147; (*GB) gi|255575467|ref|XP_002528635.1| (e_value=1e-66) homeobox protein, putative [Ricinus communis];; (*SWP) sp|Q9LZR0|ATB51_ARATH (e_value=2e-49) Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=2;; (*TAIR) AT5G03790.1 (e_value=1e-50) | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:1004985-1006373 FORWARD LENGTH=235;; (*ITAG) Solyc09g008810.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:2224847-2227824 transcript_region:SL2.40ch09:2224847..2227824- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00025450g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|255563788|ref|XP_002522895.1| (e_value=4e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16410.1 (e_value=4e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9262019-9262576 REVERSE LENGTH=185;; (*ITAG) Solyc11g012640.1.1 (e_value=3e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5423279-5423815 transcript_region:SL2.40ch11:5423279..5423815+ functional_description:"Ycf33 protein (AHRD V1 *-*- Q8DIU8_THEEB); contains Interpro domain(s) IPR008470 Protein of unknown function DUF751 "; NbS00025450g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|189; (*GB) gi|225456402|ref|XP_002280540.1| (e_value=8e-48) PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera];; (*TAIR) AT1G32583.1 (e_value=4e-48) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11787351-11788103 FORWARD LENGTH=179;; (*ITAG) Solyc11g012650.1.1 (e_value=2e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5424760-5426139 transcript_region:SL2.40ch11:5424760..5426139- functional_description:"TPD1 (AHRD V1 *-*- Q6TLJ2_ARATH)"; NbS00025450g0009.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|96; (*GB) gi|255563526|ref|XP_002522765.1| (e_value=2e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09950.1 (e_value=8e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3060354-3060632 REVERSE LENGTH=92;; (*ITAG) Solyc07g065410.1.1 (e_value=5e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64402753-64403058 transcript_region:SL2.40ch07:64402753..64403058+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008102g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|318; (*GB) gi|297738503|emb|CBI27748.3| (e_value=4e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7Z419|R144B_HUMAN (e_value=2e-19) E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1 SV=1;; (*TAIR) AT3G53690.1 (e_value=6e-76) | Symbols: | RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320;; (*ITAG) Solyc03g005970.2.1 (e_value=1e-126) genomic_reference:SL2.40ch03 gene_region:656202-658609 transcript_region:SL2.40ch03:656202..658609- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00008102g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|3|0|282; (*GB) gi|255550303|ref|XP_002516202.1| (e_value=9e-58) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT3G53690.1 (e_value=5e-49) | Symbols: | RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320;; (*ITAG) Solyc03g005970.2.1 (e_value=7e-77) genomic_reference:SL2.40ch03 gene_region:656202-658609 transcript_region:SL2.40ch03:656202..658609- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00008102g0005.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|194; (*GB) gi|357519167|ref|XP_003629872.1| (e_value=2e-58) Nitrate/chlorate transporter [Medicago truncatula];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=1e-27) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=1e-28) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc03g005950.1.1 (e_value=2e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:636645-641392 transcript_region:SL2.40ch03:636645..641392- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **** A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00008102g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|144; (*GB) gi|359483559|ref|XP_003632975.1| (e_value=5e-52) PREDICTED: probable peptide/nitrate transporter At1g27040-like [Vitis vinifera];; (*SWP) sp|Q8VYE4|PTR12_ARATH (e_value=1e-31) Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1;; (*TAIR) AT1G27040.2 (e_value=9e-33) | Symbols: | Major facilitator superfamily protein | chr1:9386893-9389838 REVERSE LENGTH=563;; (*ITAG) Solyc03g005950.1.1 (e_value=6e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:636645-641392 transcript_region:SL2.40ch03:636645..641392- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **** A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00010396g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.66|1|1|3|0|138; (*GB) gi|1173027|sp|P46290.1|RL31_NICGU (e_value=2e-44) RecName: Full=60S ribosomal protein L31;; (*SWP) sp|P46290|RL31_NICGU (e_value=7e-46) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT4G26230.1 (e_value=1e-42) | Symbols: | Ribosomal protein L31e family protein | chr4:13286026-13286553 FORWARD LENGTH=119;; (*ITAG) Solyc12g008720.1.1 (e_value=4e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2087594-2089246 transcript_region:SL2.40ch12:2087594..2089246+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00028159g0003.1 protein AED:0.01 eAED:0.01 QI:75|1|1|1|0.85|0.75|8|356|341; (*GB) gi|296085482|emb|CBI29214.3| (e_value=3e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q07G10|ALKB8_XENTR (e_value=1e-46) Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2;; (*TAIR) AT1G31600.3 (e_value=1e-150) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:11313376-11315199 REVERSE LENGTH=431;; (*ITAG) Solyc12g096230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63588077-63591891 transcript_region:SL2.40ch12:63588077..63591891+ go_terms:GO:0003676 functional_description:"Alkylated DNA repair protein alkB homolog 6 (AHRD V1 *--- D3PI67_9MAXI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00058959g0004.1 protein AED:0.44 eAED:0.56 QI:0|0|0|1|0|0|2|0|233; (*ITAG) Solyc01g017760.1.1 (e_value=8e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058959g0005.1 protein AED:0.46 eAED:0.51 QI:0|0|0|1|0|0|3|0|145; (*ITAG) Solyc07g041740.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00001558g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|255538370|ref|XP_002510250.1| (e_value=7e-110) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9SX78|CXE2_ARATH (e_value=1e-64) Probable carboxylesterase 2 OS=Arabidopsis thaliana GN=CXE2 PE=2 SV=1;; (*TAIR) AT1G47480.1 (e_value=8e-66) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314;; (*ITAG) Solyc04g079190.2.1 (e_value=6e-70) genomic_reference:SL2.40ch04 gene_region:61337920-61339311 transcript_region:SL2.40ch04:61337920..61339311+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00001558g0006.1 protein AED:0.30 eAED:0.33 QI:221|0.33|0.5|1|0.66|1|4|253|94; (*GB) gi|255538368|ref|XP_002510249.1| (e_value=7e-37) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SX77|UMP6_ARATH (e_value=9e-37) Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1;; (*TAIR) AT1G47420.1 (e_value=7e-38) | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395774-17397176 REVERSE LENGTH=257;; (*ITAG) Solyc04g079180.2.1 (e_value=1e-44) genomic_reference:SL2.40ch04 gene_region:61334211-61336777 transcript_region:SL2.40ch04:61334211..61336777- functional_description:"Unknown Protein (AHRD V1)"; NbS00001558g0003.1 protein AED:0.18 eAED:0.24 QI:255|0|0.5|1|0|0.5|2|0|135; (*GB) gi|224063537|ref|XP_002301193.1| (e_value=5e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT1G47410.2 (e_value=3e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. | chr1:17394818-17395508 FORWARD LENGTH=189;; (*ITAG) Solyc12g088890.1.1 (e_value=6e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62529087-62533501 transcript_region:SL2.40ch12:62529087..62533501+ go_terms:GO:0031072 functional_description:"DnaJ chaperone (AHRD V1 *-*- C1EBL7_9CHLO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00001558g0008.1 protein AED:0.30 eAED:0.34 QI:0|0|0|1|0|0|5|0|267; (*GB) gi|41018087|sp|Q8S8Y1.1|RPOC2_ATRBE (e_value=2e-59) RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; (*SWP) sp|Q8S8Y1|RPOC2_ATRBE (e_value=5e-61) DNA-directed RNA polymerase subunit beta'' OS=Atropa belladonna GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=7e-37) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc01g017420.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23948065-23950063 transcript_region:SL2.40ch01:23948065..23950063+ go_terms:GO:0006350,GO:0055114 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D2KLS8_OLEEU); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0006350,GO:0055114 NbS00001558g0009.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|4|0|139; (*GB) gi|351653865|ref|YP_004891590.1| (e_value=2e-18) rpoC2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P38550|RPOC2_TOBAC (e_value=6e-20) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2; NbS00020142g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|115; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=8e-27) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=4e-24) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=7e-27) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00020142g0005.1 protein AED:0.24 eAED:0.39 QI:70|0|0|0.75|0|0|4|0|145; (*ITAG) Solyc08g044330.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:31384165-31384964 transcript_region:SL2.40ch08:31384165..31384964- go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00003026g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|276; (*GB) gi|359476333|ref|XP_003631821.1| (e_value=7e-120) PREDICTED: desiccation-related protein PCC13-62-like isoform 2 [Vitis vinifera];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=3e-74) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=2e-87) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc01g099530.2.1 (e_value=1e-152) genomic_reference:SL2.40ch01 gene_region:81510268-81515514 transcript_region:SL2.40ch01:81510268..81515514- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M6N0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00003026g0005.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|16566316|gb|AAL26478.1|AF407278_1 (e_value=3e-71) RALF precursor [Nicotiana tabacum];; (*TAIR) AT4G15800.1 (e_value=9e-38) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc01g099520.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:81501401-81502283 transcript_region:SL2.40ch01:81501401..81502283- go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00003026g0017.1 protein AED:0.35 eAED:0.49 QI:0|0|0.14|1|0.83|1|7|820|219; (*ITAG) Solyc01g099530.2.1 (e_value=7e-20) genomic_reference:SL2.40ch01 gene_region:81510268-81515514 transcript_region:SL2.40ch01:81510268..81515514- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M6N0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001184g0009.1 protein AED:0.24 eAED:0.25 QI:0|0.25|0.2|1|1|1|5|0|443; (*GB) gi|17402469|emb|CAD13177.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P46259|TBA1_PEA (e_value=0.0) Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc04g077020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00001184g0014.1 protein AED:0.38 eAED:0.42 QI:347|0.5|0.55|1|0.37|0.55|9|0|316; (*GB) gi|24370975|emb|CAA70968.2| (e_value=1e-153) amino acid transporter [Solanum tuberosum];; (*SWP) sp|Q42400|AAP1_ARATH (e_value=1e-137) Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1;; (*TAIR) AT1G58360.1 (e_value=1e-138) | Symbols: AAP1, NAT2 | amino acid permease 1 | chr1:21676623-21680313 FORWARD LENGTH=485;; (*ITAG) Solyc04g077050.2.1 (e_value=1e-157) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00021493g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|1|1|-1|1|1|0|63; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=1e-22) MADS-box protein 15 [Petunia x hybrida];; (*SWP) sp|Q6Z6W2|MAD57_ORYSJ (e_value=5e-17) MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2;; (*TAIR) AT3G57390.1 (e_value=6e-18) | Symbols: AGL18 | AGAMOUS-like 18 | chr3:21233910-21235735 FORWARD LENGTH=256;; (*ITAG) Solyc05g015730.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:11842331-11842573 transcript_region:SL2.40ch05:11842331..11842573- go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D3U2G9_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00040880g0009.1 protein AED:0.02 eAED:0.03 QI:0|0.6|0.33|1|0.4|0.5|6|0|1381; (*GB) gi|2318137|gb|AAB97152.1| (e_value=0.0) Mg protoporphyrin IX chelatase [Nicotiana tabacum];; (*SWP) sp|O50314|BCHH_CHLP8 (e_value=0.0) Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2;; (*TAIR) AT5G13630.1 (e_value=0.0) | Symbols: GUN5, CCH, CHLH, CCH1, ABAR | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | chr5:4387567-4392082 REVERSE LENGTH=1381;; (*ITAG) Solyc04g015750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6034127-6040044 transcript_region:SL2.40ch04:6034127..6040044- go_terms:GO:0019899 functional_description:"Magnesium chelatase H subunit (AHRD V1 ***- D5KXY0_VITVI); contains Interpro domain(s) IPR011771 Magnesium-chelatase, subunit H "; GO:0019899 NbS00040880g0004.1 protein AED:0.18 eAED:0.26 QI:0|0|0|0.33|1|1|3|0|201; (*ITAG) Solyc04g015790.1.1 (e_value=9e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:6074482-6074865 transcript_region:SL2.40ch04:6074482..6074865- functional_description:"Unknown Protein (AHRD V1)"; NbS00015802g0005.1 protein AED:0.04 eAED:0.04 QI:224|1|1|1|0.72|0.5|12|318|1249; (*GB) gi|162280537|gb|ABX82929.1| (e_value=0.0) LO4 [Solanum pennellii];; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=0.0) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=0.0) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc02g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44715333-44723038 transcript_region:SL2.40ch02:44715333..44723038- go_terms:GO:0010329,GO:0008559 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0010329,GO:0008559 NbS00005670g0004.1 protein AED:0.32 eAED:0.32 QI:66|1|1|1|0.53|0.71|14|296|487; (*GB) gi|224713823|gb|ACN62126.1| (e_value=0.0) tryptophan decarboxylase [Capsicum annuum];; (*SWP) sp|Q8RY79|TYDC1_ARATH (e_value=0.0) Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1;; (*TAIR) AT2G20340.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490;; (*ITAG) Solyc09g064430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57250250-57257828 transcript_region:SL2.40ch09:57250250..57257828+ go_terms:GO:0004058,GO:0004398 functional_description:"Aromatic L-amino acid decarboxylase (AHRD V1 **** A6BM84_ROSDA); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase "; GO:0004058,GO:0004398 NbS00015595g0109.1 protein AED:0.25 eAED:0.31 QI:0|0|0|0.66|0.5|0.66|3|0|384 NbS00015595g0110.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|3|0|261 NbS00016387g0002.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|255550239|ref|XP_002516170.1| (e_value=7e-37) hypothetical protein RCOM_0708150 [Ricinus communis];; (*ITAG) Solyc08g067270.2.1 (e_value=2e-50) genomic_reference:SL2.40ch08 gene_region:53527786-53529732 transcript_region:SL2.40ch08:53527786..53529732- functional_description:"Unknown Protein (AHRD V1)"; NbS00006399g0016.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|378; (*GB) gi|167600643|gb|ABZ89185.1| (e_value=3e-145) putative protein [Coffea canephora];; (*TAIR) AT3G04550.1 (e_value=8e-108) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:1225961-1227310 FORWARD LENGTH=449;; (*ITAG) Solyc11g006060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:860023-861378 transcript_region:SL2.40ch11:860023..861378+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00S02_OSTTA)"; NbS00006399g0005.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|255561909|ref|XP_002521963.1| (e_value=2e-41) Ethylene-responsive transcription factor 1B, putative [Ricinus communis];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=2e-30) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=1e-31) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc11g006050.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:854682-855281 transcript_region:SL2.40ch11:854682..855281- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 ***- B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00006399g0017.1 protein AED:0.26 eAED:0.29 QI:0|0.5|0.4|0.8|1|1|5|369|739; (*GB) gi|357464819|ref|XP_003602691.1| (e_value=5e-125) Filament-like plant protein [Medicago truncatula];; (*SWP) sp|Q9MA92|FPP3_ARATH (e_value=5e-98) Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2;; (*TAIR) AT3G05270.2 (e_value=4e-99) | Symbols: | Plant protein of unknown function (DUF869) | chr3:1500803-1502926 REVERSE LENGTH=615;; (*ITAG) Solyc12g068070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:54518644-54522087 transcript_region:SL2.40ch12:54518644..54522087- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00017197g0003.1 protein AED:0.14 eAED:0.14 QI:119|1|1|1|1|1|2|172|494; (*GB) gi|225446335|ref|XP_002273904.1| (e_value=8e-136) PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=4e-112) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.1 (e_value=3e-113) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926110-8927722 FORWARD LENGTH=490;; (*ITAG) Solyc07g054090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59816862-59821512 transcript_region:SL2.40ch07:59816862..59821512- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003793g0007.1 protein AED:0.29 eAED:0.29 QI:291|1|1|1|0.5|0.6|5|282|148; (*GB) gi|40287554|gb|AAR83891.1| (e_value=5e-107) ubiquitin-conjugating enzyme 8 [Capsicum annuum];; (*SWP) sp|P35133|UBC10_ARATH (e_value=9e-107) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1;; (*TAIR) AT5G53300.4 (e_value=7e-108) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc08g008220.2.1 (e_value=9e-110) genomic_reference:SL2.40ch08 gene_region:2668832-2672512 transcript_region:SL2.40ch08:2668832..2672512+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00003793g0006.1 protein AED:0.15 eAED:0.15 QI:175|1|1|1|0.8|1|6|270|241; (*GB) gi|9652289|gb|AAF91469.1| (e_value=2e-152) putative vacuolar proton ATPase subunit E [Solanum lycopersicum];; (*SWP) sp|Q9SWE7|VATE_CITLI (e_value=2e-132) V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1;; (*TAIR) AT1G64200.1 (e_value=9e-127) | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E isoform 3 | chr1:23828537-23830002 REVERSE LENGTH=237;; (*ITAG) Solyc08g008210.2.1 (e_value=2e-159) genomic_reference:SL2.40ch08 gene_region:2662300-2667303 transcript_region:SL2.40ch08:2662300..2667303- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00036180g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|0.5|2|0|581; (*GB) gi|225444365|ref|XP_002264920.1| (e_value=0.0) PREDICTED: COBRA-like protein 10 [Vitis vinifera];; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0.0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1;; (*TAIR) AT3G20580.1 (e_value=0.0) | Symbols: COBL10 | COBRA-like protein 10 precursor | chr3:7188063-7190416 REVERSE LENGTH=672;; (*ITAG) Solyc10g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1056386-1059210 transcript_region:SL2.40ch10:1056386..1059210- functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00036180g0007.1 protein AED:0.11 eAED:0.11 QI:293|0.8|0.83|1|0.6|0.33|6|235|204; (*GB) gi|224078691|ref|XP_002305604.1| (e_value=3e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT4G04900.1 (e_value=1e-20) | Symbols: RIC10 | ROP-interactive CRIB motif-containing protein 10 | chr4:2486218-2487779 REVERSE LENGTH=156;; (*ITAG) Solyc02g080230.2.1 (e_value=8e-88) genomic_reference:SL2.40ch02 gene_region:39084532-39087315 transcript_region:SL2.40ch02:39084532..39087315+ functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00015751g0019.1 protein AED:0.14 eAED:0.17 QI:15|0.4|0.18|1|0.4|0.36|11|0|1048; (*GB) gi|359491354|ref|XP_002266572.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267228 [Vitis vinifera];; (*SWP) sp|O14099|YERG_SCHPO (e_value=1e-16) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT1G74770.1 (e_value=0.0) | Symbols: | zinc ion binding | chr1:28089695-28094834 REVERSE LENGTH=1259;; (*ITAG) Solyc03g113350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57552366-57558840 transcript_region:SL2.40ch03:57552366..57558840+ go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00015751g0015.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.71|0.75|8|457|538; (*GB) gi|305689802|gb|ADM64334.1| (e_value=0.0) calcium-dependent protein kinase 9 [Nicotiana tabacum];; (*SWP) sp|Q9SSF8|CDPKU_ARATH (e_value=0.0) Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana GN=CPK30 PE=1 SV=1;; (*TAIR) AT1G74740.1 (e_value=0.0) | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-dependent protein kinase 30 | chr1:28080199-28082476 REVERSE LENGTH=541;; (*ITAG) Solyc03g113390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57593080-57598567 transcript_region:SL2.40ch03:57593080..57598567+ go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** A9Z0P8_DATME); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00015751g0016.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|313; (*GB) gi|255540875|ref|XP_002511502.1| (e_value=4e-94) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=6e-50) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=4e-51) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc03g113360.2.1 (e_value=3e-148) genomic_reference:SL2.40ch03 gene_region:57559925-57563405 transcript_region:SL2.40ch03:57559925..57563405- functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00015751g0002.1 protein AED:0.16 eAED:0.19 QI:0|0.33|0|1|1|1|4|0|905; (*GB) gi|255540881|ref|XP_002511505.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SSF9|PP123_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1;; (*TAIR) AT1G74750.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28086800-28089367 FORWARD LENGTH=855;; (*ITAG) Solyc03g113380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57579634-57586074 transcript_region:SL2.40ch03:57579634..57586074- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS48_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00015751g0022.1 protein AED:0.22 eAED:0.27 QI:2131|0.55|0.42|0.94|0.5|0.52|19|0|794; (*GB) gi|225456629|ref|XP_002266656.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera];; (*TAIR) AT3G47890.1 (e_value=7e-175) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc03g113370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57567290-57576026 transcript_region:SL2.40ch03:57567290..57576026- go_terms:GO:0006511,GO:0005622 functional_description:"Inactive ubiquitin carboxyl-terminal hydrolase 54 (AHRD V1 *-*- UBP54_MOUSE); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00047561g0001.1 protein AED:0.21 eAED:0.21 QI:0|0.53|0.57|0.85|1|1|14|0|469; (*GB) gi|125599360|gb|EAZ38936.1| (e_value=2e-119) hypothetical protein OsJ_23357 [Oryza sativa Japonica Group];; (*SWP) sp|Q9FQ08|KU70_ARATH (e_value=4e-98) ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana GN=KU70 PE=1 SV=1;; (*TAIR) AT1G16970.1 (e_value=3e-99) | Symbols: KU70, ATKU70 | KU70 homolog | chr1:5801159-5805724 REVERSE LENGTH=621;; (*ITAG) Solyc09g098230.2.1 (e_value=4e-132) genomic_reference:SL2.40ch09 gene_region:67349841-67364289 transcript_region:SL2.40ch09:67349841..67364289- go_terms:GO:0008022,GO:0003691 functional_description:"ATP-dependent DNA helicase 2 subunit KU70 (AHRD V1 **-* KU70_ARATH); contains Interpro domain(s) IPR006165 DNA helicase, ATP-dependent, Ku70 subunit "; GO:0008022,GO:0003691 NbS00001457g0003.1 protein AED:0.05 eAED:0.05 QI:58|1|1|1|0.5|0.33|3|232|231; (*GB) gi|71041098|gb|AAZ20437.1| (e_value=1e-49) MYB21 [Malus x domestica];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=4e-43) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT2G31180.1 (e_value=2e-45) | Symbols: ATMYB14, MYB14AT, MYB14 | myb domain protein 14 | chr2:13286806-13288175 REVERSE LENGTH=249;; (*ITAG) Solyc03g093890.2.1 (e_value=3e-74) genomic_reference:SL2.40ch03 gene_region:48994736-48996204 transcript_region:SL2.40ch03:48994736..48996204- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00016553g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.5|1|1|1|6|195|241; (*GB) gi|297740592|emb|CBI30774.3| (e_value=5e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2V3H0|PP322_ARATH (e_value=2e-98) Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2;; (*TAIR) AT4G18975.4 (e_value=2e-99) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10392170-10393665 REVERSE LENGTH=287;; (*ITAG) Solyc02g071570.2.1 (e_value=5e-134) genomic_reference:SL2.40ch02 gene_region:35551175-35554132 transcript_region:SL2.40ch02:35551175..35554132+ functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 ***- PP332_ARATH)"; NbS00016553g0019.1 protein AED:0.19 eAED:0.19 QI:205|0.85|0.73|1|0.71|0.73|15|340|763; (*GB) gi|356528364|ref|XP_003532774.1| (e_value=0.0) PREDICTED: exonuclease 1-like [Glycine max];; (*SWP) sp|Q8L6Z7|EXO1_ARATH (e_value=0.0) Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2;; (*TAIR) AT1G29630.2 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr1:10349587-10353538 FORWARD LENGTH=735;; (*ITAG) Solyc02g071530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35501383-35509962 transcript_region:SL2.40ch02:35501383..35509962+ go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *--- FEN_CALMQ); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00016553g0021.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|0.16|0.42|7|0|573; (*GB) gi|224136021|ref|XP_002327361.1| (e_value=6e-63) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=3e-35) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36140.1 (e_value=2e-46) | Symbols: CYP716A2 | cytochrome P450, family 716, subfamily A, polypeptide 2 | chr5:14212212-14213259 REVERSE LENGTH=318;; (*ITAG) Solyc06g065420.1.1 (e_value=6e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37226395-37227972 transcript_region:SL2.40ch06:37226395..37227972- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00016553g0004.1 protein AED:0.41 eAED:0.41 QI:0|1|0.66|1|1|1|3|197|476; (*GB) gi|224136021|ref|XP_002327361.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=1e-145) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=3e-149) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc06g065420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37226395-37227972 transcript_region:SL2.40ch06:37226395..37227972- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00016553g0007.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|297826899|ref|XP_002881332.1| (e_value=1e-22) hypothetical protein ARALYDRAFT_482377 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G34340.1 (e_value=3e-23) | Symbols: | Protein of unknown function, DUF584 | chr2:14489032-14489442 REVERSE LENGTH=136;; (*ITAG) Solyc03g005890.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:603677-604093 transcript_region:SL2.40ch03:603677..604093- functional_description:"Genomic DNA chromosome 5 P1 clone MRA19 (AHRD V1 **-- Q9FK78_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00031135g0002.1 protein AED:0.02 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|492; (*GB) gi|297813753|ref|XP_002874760.1| (e_value=0.0) UDP-D-glucuronate 4-epimerase 5 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9STI6|GAE5_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1;; (*TAIR) AT4G12250.1 (e_value=0.0) | Symbols: GAE5 | UDP-D-glucuronate 4-epimerase 5 | chr4:7289538-7290848 REVERSE LENGTH=436;; (*ITAG) Solyc08g079440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60129988-60131325 transcript_region:SL2.40ch08:60129988..60131325+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00003127g0013.1 protein AED:0.38 eAED:0.38 QI:0|1|0.8|1|1|1|10|0|376; (*GB) gi|3121837|sp|O04940.1|CDS1_SOLTU (e_value=0.0) RecName: Full=Phosphatidate cytidylyltransferase; AltName: Full=CDP-DAG synthase; AltName: Full=CDP-DG synthase; AltName: Full=CDP-diacylglycerol synthase; Short=CDS; AltName: Full=CDP-diglyceride pyrophosphorylase; AltName: Full=CDP-diglyceride synthase; AltName: Full=CTP:phosphatidate cytidylyltransferase;; (*SWP) sp|O04940|CDS1_SOLTU (e_value=0.0) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G22340.1 (e_value=0.0) | Symbols: CDS2 | cytidinediphosphate diacylglycerol synthase 2 | chr4:11800150-11802549 REVERSE LENGTH=423;; (*ITAG) Solyc03g005410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:272416-288140 transcript_region:SL2.40ch03:272416..288140- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RXC8_RICCO); contains Interpro domain(s) IPR016720 Phosphatidate cytidylyltransferase, eukaryota "; GO:0004605 NbS00003127g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|1|1|2|290|747; (*GB) gi|225432900|ref|XP_002284161.1| (e_value=0.0) PREDICTED: protein transport protein sec23-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q4PE39|SEC23_USTMA (e_value=0.0) Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1;; (*TAIR) AT5G43670.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr5:17539025-17541733 REVERSE LENGTH=794;; (*ITAG) Solyc03g005380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:216942-222990 transcript_region:SL2.40ch03:216942..222990+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein SEC23 (AHRD V1 ***- Q9FG78_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00003127g0014.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.72|1|0.9|1|11|540|404; (*GB) gi|225432906|ref|XP_002284181.1| (e_value=0.0) PREDICTED: magnesium transporter MRS2-I isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FLG2|MRS22_ARATH (e_value=5e-169) Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1;; (*TAIR) AT5G64560.1 (e_value=4e-170) | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transporter 9 | chr5:25807025-25809395 REVERSE LENGTH=394;; (*ITAG) Solyc03g005390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:224656-235140 transcript_region:SL2.40ch03:224656..235140+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-I (AHRD V1 **** MRS2I_ORYSJ); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00023638g0003.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|255546081|ref|XP_002514100.1| (e_value=2e-83) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=7e-80) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT2G19410.1 (e_value=5e-81) | Symbols: | U-box domain-containing protein kinase family protein | chr2:8404901-8409012 REVERSE LENGTH=801;; (*ITAG) Solyc12g008990.1.1 (e_value=1e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00023638g0004.1 protein AED:0.79 eAED:0.79 QI:0|1|0|1|1|1|2|0|128; (*GB) gi|297738630|emb|CBI27875.3| (e_value=4e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=3e-44) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT2G19410.1 (e_value=2e-45) | Symbols: | U-box domain-containing protein kinase family protein | chr2:8404901-8409012 REVERSE LENGTH=801;; (*ITAG) Solyc12g008990.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00023638g0016.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|0|0|2|0|725; (*GB) gi|280967730|gb|ACZ98536.1| (e_value=0.0) protein kinase [Malus x domestica];; (*SWP) sp|O48788|Y2267_ARATH (e_value=0.0) Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1;; (*TAIR) AT2G26730.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658;; (*ITAG) Solyc03g111670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56365106-56368947 transcript_region:SL2.40ch03:56365106..56368947- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00042509g0003.1 protein AED:0.00 eAED:0.00 QI:401|1|0.5|1|1|1|2|0|143; (*GB) gi|359807439|ref|NP_001241135.1| (e_value=2e-61) uncharacterized protein LOC100789925 [Glycine max];; (*TAIR) AT4G24160.2 (e_value=2e-60) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12539871-12541818 FORWARD LENGTH=342;; (*ITAG) Solyc07g032170.2.1 (e_value=2e-84) genomic_reference:SL2.40ch07 gene_region:35651053-35654304 transcript_region:SL2.40ch07:35651053..35654304+ functional_description:"Abhydrolase domain-containing protein 5 (AHRD V1 **-- B4FAQ7_MAIZE)"; NbS00001892g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|255564102|ref|XP_002523049.1| (e_value=2e-42) N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative [Ricinus communis];; (*TAIR) AT3G56330.1 (e_value=4e-41) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr3:20890250-20891933 FORWARD LENGTH=433;; (*ITAG) Solyc06g049100.2.1 (e_value=1e-79) genomic_reference:SL2.40ch06 gene_region:28866325-28867783 transcript_region:SL2.40ch06:28866325..28867783- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B4W4K6_9CYAN); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00001892g0032.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|117; (*GB) gi|42570018|ref|NP_671802.2| (e_value=1e-13) Mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=5e-15) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=3e-16) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g028150.1.1 (e_value=2e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00001892g0050.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0.33|3|0|177; (*GB) gi|57013971|ref|YP_173443.1| (e_value=8e-79) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00001892g0059.1 protein AED:0.47 eAED:0.47 QI:17|0|0|0.33|0.4|0.5|6|0|214; (*GB) gi|57013889|ref|YP_173363.1| (e_value=1e-37) hypothetical protein NitaMp015 [Nicotiana tabacum]; NbS00001892g0057.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.5|0|0.5|2|0|63; (*GB) gi|57013986|ref|YP_173458.1| (e_value=1e-18) hypothetical protein NitaMp120 [Nicotiana tabacum]; NbS00001892g0051.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0.25|4|0|162; (*GB) gi|57013969|ref|YP_173441.1| (e_value=8e-23) hypothetical protein NitaMp103 [Nicotiana tabacum]; NbS00001892g0060.1 protein AED:0.05 eAED:0.13 QI:0|0.6|0.66|1|0.6|0.83|6|0|232; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=6e-143) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=2e-144) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=2e-115) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=1e-140) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00001892g0002.1 protein AED:0.37 eAED:0.89 QI:44|0|0.5|1|0|0.5|2|67|292 NbS00001892g0010.1 protein AED:0.89 eAED:0.96 QI:0|0|0|0.18|1|1|22|0|783 NbS00001892g0056.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|0|0|6|0|410; (*GB) gi|50058629|gb|AAT69067.1| (e_value=9e-129) F1-ATPase alpha subunit [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-129) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=9e-122) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00001892g0047.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0|3|0|305; (*GB) gi|357436015|ref|XP_003588283.1| (e_value=2e-129) Cytochrome c biogenesis [Medicago truncatula];; (*SWP) sp|P93286|CCMF_ARATH (e_value=4e-89) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=3e-93) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=7e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00001892g0048.1 protein AED:0.38 eAED:0.50 QI:0|0|0|1|0|0|3|0|223; (*GB) gi|57013999|ref|YP_173470.1| (e_value=8e-107) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=3e-97) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=1e-100) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=1e-107) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00001892g0052.1 protein AED:0.30 eAED:0.65 QI:0|0|0|1|0|0|2|0|179; (*GB) gi|57013972|ref|YP_173444.1| (e_value=6e-38) hypothetical protein NitaMp106 [Nicotiana tabacum]; NbS00001892g0053.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|134; (*ITAG) Solyc11g039350.1.1 (e_value=4e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23160122-23160442 transcript_region:SL2.40ch11:23160122..23160442- functional_description:"Unknown Protein (AHRD V1)"; NbS00001892g0058.1 protein AED:0.42 eAED:0.48 QI:0|0|0|1|0|0|2|0|119; (*GB) gi|1421799|gb|AAB03873.1| (e_value=6e-54) F1-ATPase alpha subunit [Petunia axillaris subsp. parodii];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-55) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=2e-49) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00001892g0054.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|99; (*ITAG) Solyc11g039350.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23160122-23160442 transcript_region:SL2.40ch11:23160122..23160442- functional_description:"Unknown Protein (AHRD V1)"; NbS00001892g0049.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|57013941|ref|YP_173414.1| (e_value=1e-39) hypothetical protein NitaMp070 [Nicotiana tabacum]; NbS00001892g0055.1 protein AED:0.29 eAED:0.35 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|57013989|ref|YP_173461.1| (e_value=1e-27) hypothetical protein NitaMp123 [Nicotiana tabacum]; NbS00060566g0002.1 protein AED:0.48 eAED:0.48 QI:114|0|0.5|0.5|1|1|2|0|61 NbS00031994g0006.1 protein AED:0.21 eAED:0.21 QI:255|0.76|0.72|1|0.41|0.55|18|364|763; (*GB) gi|225457148|ref|XP_002280399.1| (e_value=0.0) PREDICTED: alpha-N-acetylglucosaminidase-like [Vitis vinifera];; (*SWP) sp|P54802|ANAG_HUMAN (e_value=4e-148) Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2;; (*TAIR) AT5G13690.1 (e_value=0.0) | Symbols: CYL1, NAGLU | alpha-N-acetylglucosaminidase family / NAGLU family | chr5:4415808-4420159 FORWARD LENGTH=806;; (*ITAG) Solyc01g087610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74319149-74336096 transcript_region:SL2.40ch01:74319149..74336096- go_terms:GO:0004561 functional_description:"Alpha-N-acetylglucosaminidase (AHRD V1 **** Q9ZR45_TOBAC); contains Interpro domain(s) IPR007781 Alpha-N-acetylglucosaminidase "; GO:0004561 NbS00031994g0003.1 protein AED:0.27 eAED:0.43 QI:0|0|0|1|1|1|2|0|68; (*ITAG) Solyc03g113810.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57910242-57910481 transcript_region:SL2.40ch03:57910242..57910481- functional_description:"Unknown Protein (AHRD V1)"; NbS00026109g0006.1 protein AED:0.02 eAED:0.02 QI:69|1|1|1|1|1|2|363|216; (*GB) gi|224114397|ref|XP_002316748.1| (e_value=2e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45660.1 (e_value=3e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:18525103-18526726 FORWARD LENGTH=226;; (*ITAG) Solyc02g071600.2.1 (e_value=2e-103) genomic_reference:SL2.40ch02 gene_region:35583966-35586668 transcript_region:SL2.40ch02:35583966..35586668+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026109g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.8|1|0.25|0.4|5|247|345; (*GB) gi|60459375|gb|AAX20033.1| (e_value=0.0) GDSL-lipase protein [Capsicum annuum];; (*SWP) sp|Q9FK75|GDL82_ARATH (e_value=1e-179) GDSL esterase/lipase At5g45670 OS=Arabidopsis thaliana GN=At5g45670 PE=2 SV=1;; (*TAIR) AT5G45670.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18528600-18530164 FORWARD LENGTH=362;; (*ITAG) Solyc02g071610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35588862-35591358 transcript_region:SL2.40ch02:35588862..35591358+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45670 (AHRD V1 ***- GDL82_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00010096g0002.1 protein AED:0.48 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|102; (*GB) gi|255577161|ref|XP_002529464.1| (e_value=1e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G55125.2 (e_value=4e-24) | Symbols: | Ribosomal protein L31 | chr5:22372737-22372967 FORWARD LENGTH=76;; (*ITAG) Solyc11g068490.1.1 (e_value=4e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50278529-50278717 transcript_region:SL2.40ch11:50278529..50278717- functional_description:"cDNA clone J013021P22 full insert sequence (AHRD V1 ***- B7EAV4_ORYSJ)"; NbS00038840g0001.1 protein AED:0.22 eAED:0.24 QI:355|0|0.5|1|0|0.5|2|132|126; (*GB) gi|356500313|ref|XP_003518977.1| (e_value=2e-24) PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase FabG-like [Glycine max];; (*TAIR) AT2G17845.1 (e_value=9e-26) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:7758846-7759881 FORWARD LENGTH=312;; (*ITAG) Solyc12g100280.1.1 (e_value=3e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65389852-65390560 transcript_region:SL2.40ch12:65389852..65390560- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- C3MSD7_SULIM); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00038840g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|0|0|3|0|206; (*GB) gi|225435614|ref|XP_002285640.1| (e_value=1e-63) PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 [Vitis vinifera];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=2e-59) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=3e-56) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc01g006430.2.1 (e_value=2e-65) genomic_reference:SL2.40ch01 gene_region:1033539-1035178 transcript_region:SL2.40ch01:1033539..1035178- go_terms:GO:0042389 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** Q461Q1_HEVBR); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00038840g0008.1 protein AED:0.43 eAED:0.67 QI:0|0|0|0.66|0|0|3|0|78 NbS00019349g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|418; (*GB) gi|359478001|ref|XP_003632052.1| (e_value=0.0) PREDICTED: probable glucan endo-1,3-beta-glucosidase A6-like [Vitis vinifera];; (*SWP) sp|Q06915|EA6_ARATH (e_value=8e-170) Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1;; (*TAIR) AT3G23770.1 (e_value=3e-179) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8565556-8567196 FORWARD LENGTH=476;; (*ITAG) Solyc12g098560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64370953-64372808 transcript_region:SL2.40ch12:64370953..64372808- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00040630g0002.1 protein AED:0.02 eAED:0.02 QI:135|1|1|1|0|0.5|2|675|340; (*GB) gi|356499719|ref|XP_003518684.1| (e_value=1e-171) PREDICTED: probable galacturonosyltransferase-like 3-like [Glycine max];; (*SWP) sp|Q0V7R1|GATL3_ARATH (e_value=5e-161) Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1;; (*TAIR) AT1G13250.1 (e_value=3e-162) | Symbols: GATL3 | galacturonosyltransferase-like 3 | chr1:4528965-4530002 REVERSE LENGTH=345;; (*ITAG) Solyc05g009820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4035740-4037317 transcript_region:SL2.40ch05:4035740..4037317+ go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00028408g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|0.66|1|1|3|0|593; (*GB) gi|30013667|gb|AAP03876.1| (e_value=1e-116) Avr9/Cf-9 rapidly elicited protein 126 [Nicotiana tabacum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=4e-52) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=3e-53) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc02g067430.2.1 (e_value=4e-134) genomic_reference:SL2.40ch02 gene_region:32190832-32193017 transcript_region:SL2.40ch02:32190832..32193017- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00002719g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|586; (*GB) gi|255565550|ref|XP_002523765.1| (e_value=0.0) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=0.0) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1;; (*TAIR) AT1G03050.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599;; (*ITAG) Solyc01g104870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84950354-84952688 transcript_region:SL2.40ch01:84950354..84952688+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00002719g0011.1 protein AED:0.10 eAED:0.15 QI:0|0.33|0|1|0|0.5|4|0|860; (*GB) gi|297736269|emb|CBI24907.3| (e_value=2e-105) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G47940.1 (e_value=2e-47) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19409407-19411893 REVERSE LENGTH=749;; (*ITAG) Solyc11g007060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1532029-1536153 transcript_region:SL2.40ch11:1532029..1536153- functional_description:"Genomic DNA chromosome 5 TAC clone K16F13 (AHRD V1 *-*- Q9FGV5_ARATH)"; NbS00002719g0104.1 protein AED:0.35 eAED:0.35 QI:719|0.8|0.72|1|0.8|0.72|11|270|420 NbS00002719g0205.1 protein AED:0.31 eAED:0.31 QI:168|1|1|1|1|1|3|321|242 NbS00048974g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.9|0.90|1|0.8|0.81|11|242|363; (*GB) gi|255579737|ref|XP_002530707.1| (e_value=0.0) DNA polymerase delta small subunit, putative [Ricinus communis];; (*SWP) sp|O48520|DPOD2_ARATH (e_value=0.0) DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2;; (*TAIR) AT2G42120.1 (e_value=0.0) | Symbols: POLD2 | DNA polymerase delta small subunit | chr2:17563282-17565965 REVERSE LENGTH=441;; (*ITAG) Solyc03g063340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:31738398-31763626 transcript_region:SL2.40ch03:31738398..31763626+ go_terms:GO:0005515 functional_description:"DNA polymerase subunit delta-2 (AHRD V1 ***- B5X3P2_SALSA); contains Interpro domain(s) IPR007185 DNA polymerase alpha/epsilon, subunit B "; GO:0005515 NbS00013447g0208.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|0.5|2|0|366 NbS00013447g0203.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.75|1|1|4|0|89 NbS00028072g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.74|0.69|0.97|0.91|0.91|36|0|1742; (*GB) gi|147777785|emb|CAN75734.1| (e_value=0.0) hypothetical protein VITISV_030148 [Vitis vinifera];; (*SWP) sp|Q4VA53|PDS5B_MOUSE (e_value=2e-64) Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1;; (*TAIR) AT5G47690.3 (e_value=0.0) | Symbols: | binding | chr5:19317899-19327014 FORWARD LENGTH=1607;; (*ITAG) Solyc11g012770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5526597-5549066 transcript_region:SL2.40ch11:5526597..5549066+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B (AHRD V1 **-- PDS5B_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00028072g0011.1 protein AED:0.38 eAED:0.38 QI:23|1|0.33|1|0.5|0.66|3|0|106; (*GB) gi|225469943|ref|XP_002275013.1| (e_value=9e-53) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Vitis vinifera];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-27) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT5G47710.2 (e_value=2e-51) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:19330470-19331178 FORWARD LENGTH=166;; (*ITAG) Solyc04g015070.2.1 (e_value=2e-64) genomic_reference:SL2.40ch04 gene_region:5263062-5264993 transcript_region:SL2.40ch04:5263062..5264993+ functional_description:"C2 domain containing protein (AHRD V1 **-- Q2A9R2_BRAOL); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00004521g0006.1 protein AED:0.24 eAED:0.25 QI:331|1|0.5|1|0|0|2|0|250; (*GB) gi|359487291|ref|XP_003633561.1| (e_value=3e-109) PREDICTED: protein FRA10AC1-like [Vitis vinifera];; (*SWP) sp|Q70Z53|F10C1_HUMAN (e_value=2e-57) Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=3;; (*TAIR) AT4G15030.1 (e_value=2e-95) | Symbols: | CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink). | chr4:8578989-8581180 FORWARD LENGTH=278;; (*ITAG) Solyc04g074660.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58172927-58173772 transcript_region:SL2.40ch04:58172927..58173772+ functional_description:"Fra10ac1 protein (AHRD V1 *--- Q1LZ54_MOUSE); contains Interpro domain(s) IPR019129 Folate-sensitive fragile site protein Fra10Ac1 "; NbS00004521g0015.1 protein AED:0.26 eAED:0.29 QI:0|1|0.5|1|1|1|2|640|221; (*GB) gi|255551120|ref|XP_002516608.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G25540.1 (e_value=1e-25) | Symbols: CID6 | CTC-interacting domain 6 | chr5:8891770-8892362 REVERSE LENGTH=175;; (*ITAG) Solyc08g067810.2.1 (e_value=2e-93) genomic_reference:SL2.40ch08 gene_region:54056525-54058909 transcript_region:SL2.40ch08:54056525..54058909- go_terms:GO:0005515 functional_description:"CID5/IPD1 (AHRD V1 ***- D7M3Q7_ARALY); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; GO:0005515 NbS00004521g0019.1 protein AED:0.26 eAED:0.30 QI:0|0.5|0.33|1|1|1|3|310|235; (*GB) gi|255551130|ref|XP_002516613.1| (e_value=5e-109) Protein psi1, putative [Ricinus communis];; (*SWP) sp|Q9QYJ3|DNJB1_MOUSE (e_value=1e-51) DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3;; (*TAIR) AT5G25530.1 (e_value=4e-104) | Symbols: | DNAJ heat shock family protein | chr5:8889665-8890954 REVERSE LENGTH=347;; (*ITAG) Solyc09g005350.2.1 (e_value=1e-82) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00004521g0020.1 protein AED:0.34 eAED:0.39 QI:470|0.5|0.66|1|0.5|0.33|3|0|69; (*GB) gi|148906823|gb|ABR16557.1| (e_value=6e-32) unknown [Picea sitchensis];; (*SWP) sp|Q5F3Z5|DNJB6_CHICK (e_value=1e-23) DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1;; (*TAIR) AT5G01390.3 (e_value=5e-32) | Symbols: | DNAJ heat shock family protein | chr5:160500-162199 REVERSE LENGTH=238;; (*ITAG) Solyc02g077670.2.1 (e_value=6e-33) genomic_reference:SL2.40ch02 gene_region:37137141-37141307 transcript_region:SL2.40ch02:37137141..37141307- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00004521g0003.1 protein AED:0.14 eAED:0.17 QI:0|1|0.25|1|1|1|4|0|1091; (*GB) gi|225430091|ref|XP_002281873.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267937 [Vitis vinifera];; (*SWP) sp|Q92576|PHF3_HUMAN (e_value=7e-18) PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3;; (*TAIR) AT5G11430.1 (e_value=5e-141) | Symbols: | SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873;; (*ITAG) Solyc08g067790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54030139-54036638 transcript_region:SL2.40ch08:54030139..54036638- go_terms:GO:0005634,GO:0006350 functional_description:"Transcription elongation factor S-II (AHRD V1 *-*- D3PGG1_9MAXI); contains Interpro domain(s) IPR017890 Transcription elongation factor S-IIM "; GO:0005634,GO:0006350 NbS00004521g0004.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|123 NbS00035647g0003.1 protein AED:0.20 eAED:0.20 QI:91|1|1|1|1|1|5|289|332; (*GB) gi|350537525|ref|NP_001234297.1| (e_value=0.0) cinnamoyl-CoA reductase [Solanum lycopersicum];; (*SWP) sp|P51104|DFRA_DIACA (e_value=3e-78) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1;; (*TAIR) AT1G15950.1 (e_value=0.0) | Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reductase 1 | chr1:5478855-5481915 FORWARD LENGTH=344;; (*ITAG) Solyc03g116910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60230367-60233158 transcript_region:SL2.40ch03:60230367..60233158- go_terms:GO:0016621 functional_description:"Cinnamoyl-CoA reductase (AHRD V1 **** Q4U1I4_SOLLC); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621 NbS00013057g0005.1 protein AED:0.18 eAED:0.20 QI:98|0|0.5|1|0|0|2|0|257; (*GB) gi|225446349|ref|XP_002274029.1| (e_value=4e-99) PREDICTED: riboflavin synthase alpha chain [Vitis vinifera];; (*SWP) sp|Q9Y7P0|RISA_SCHPO (e_value=4e-52) Riboflavin synthase alpha chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rib5 PE=1 SV=1;; (*TAIR) AT2G20690.1 (e_value=1e-89) | Symbols: | lumazine-binding family protein | chr2:8923342-8924621 FORWARD LENGTH=271;; (*ITAG) Solyc07g054190.2.1 (e_value=5e-140) genomic_reference:SL2.40ch07 gene_region:59875898-59878620 transcript_region:SL2.40ch07:59875898..59878620- go_terms:GO:0004746 functional_description:"Riboflavin synthase alpha subunit (AHRD V1 **** A5URX5_ROSS1); contains Interpro domain(s) IPR001783 Lumazine-binding protein "; GO:0004746 NbS00025844g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|46399269|gb|AAS92255.1| (e_value=0.0) putative pyridoxine biosynthesis protein isoform A [Nicotiana tabacum];; (*SWP) sp|Q39963|PDX1_HEVBR (e_value=0.0) Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1;; (*TAIR) AT5G01410.1 (e_value=0.0) | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309;; (*ITAG) Solyc06g081980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44239265-44240194 transcript_region:SL2.40ch06:44239265..44240194+ go_terms:GO:0046982,GO:0042803 functional_description:"Pyridoxal biosynthesis lyase pdxS (AHRD V1 ***- D0MQW5_PHYIN); contains Interpro domain(s) IPR001852 Vitamin B6 biosynthesis protein "; GO:0046982,GO:0042803 NbS00021691g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|108|282; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=5e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=2e-62) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G49620.1 (e_value=1e-84) | Symbols: AtMYB78, MYB78 | myb domain protein 78 | chr5:20137491-20139384 REVERSE LENGTH=307;; (*ITAG) Solyc01g057910.2.1 (e_value=2e-121) genomic_reference:SL2.40ch01 gene_region:57222003-57223704 transcript_region:SL2.40ch01:57222003..57223704+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002567g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|300681467|emb|CBH32561.1| (e_value=8e-79) histone H3, expressed [Triticum aestivum];; (*SWP) sp|P68428|H32_WHEAT (e_value=3e-80) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=2e-81) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00020942g0001.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|92 NbS00019968g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|20149052|gb|AAM12781.1| (e_value=4e-54) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=4e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00019968g0007.1 protein AED:0.21 eAED:0.21 QI:188|1|1|1|0|0|2|34|56 NbS00025820g0005.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|1|1|3|0|64; (*GB) gi|158325159|gb|ABW34717.1| (e_value=7e-20) acireductone dioxygenase [Solanum tuberosum];; (*SWP) sp|Q8W108|MTND3_ARATH (e_value=8e-21) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1;; (*TAIR) AT4G14710.3 (e_value=4e-22) | Symbols: ATARD2 | RmlC-like cupins superfamily protein | chr4:8424897-8426360 REVERSE LENGTH=200;; (*ITAG) Solyc09g082650.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:63765012-63769755 transcript_region:SL2.40ch09:63765012..63769755+ go_terms:GO:0010309 functional_description:"Acireductone dioxygenase (AHRD V1 **** A8UGP3_SOLTU); contains Interpro domain(s) IPR004313 Acireductone dioxygenase, ARD "; GO:0010309 NbS00025820g0008.1 protein AED:0.28 eAED:0.29 QI:170|0.71|0.75|1|0.85|0.75|8|450|195; (*GB) gi|158325159|gb|ABW34717.1| (e_value=3e-123) acireductone dioxygenase [Solanum tuberosum];; (*SWP) sp|Q8W108|MTND3_ARATH (e_value=6e-121) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1;; (*TAIR) AT4G14710.2 (e_value=4e-122) | Symbols: ATARD2 | RmlC-like cupins superfamily protein | chr4:8424897-8426360 REVERSE LENGTH=199;; (*ITAG) Solyc09g082650.2.1 (e_value=2e-99) genomic_reference:SL2.40ch09 gene_region:63765012-63769755 transcript_region:SL2.40ch09:63765012..63769755+ go_terms:GO:0010309 functional_description:"Acireductone dioxygenase (AHRD V1 **** A8UGP3_SOLTU); contains Interpro domain(s) IPR004313 Acireductone dioxygenase, ARD "; GO:0010309 NbS00025820g0006.1 protein AED:0.61 eAED:0.68 QI:0|0|0|0.66|0|0|3|0|52 NbS00058839g0001.1 protein AED:0.09 eAED:0.09 QI:205|1|1|1|0.84|0.78|14|278|544; (*GB) gi|255582775|ref|XP_002532163.1| (e_value=0.0) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SFB0|FRD3_ARATH (e_value=0.0) MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1;; (*TAIR) AT3G08040.2 (e_value=0.0) | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family protein | chr3:2566593-2569397 REVERSE LENGTH=526;; (*ITAG) Solyc01g087150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73849052-73851926 transcript_region:SL2.40ch01:73849052..73851926+ go_terms:GO:0005215 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00058839g0002.1 protein AED:0.16 eAED:0.21 QI:419|1|0.5|1|0|0|2|0|667; (*GB) gi|294440421|gb|ADE74631.1| (e_value=0.0) unknown [Vitis vinifera];; (*SWP) sp|P93755|C3H30_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc01g087170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73864028-73865449 transcript_region:SL2.40ch01:73864028..73865449- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0003700 NbS00033907g0004.1 protein AED:0.51 eAED:0.51 QI:0|0.5|0|0.66|1|1|3|0|89; (*ITAG) Solyc03g097250.2.1 (e_value=5e-37) genomic_reference:SL2.40ch03 gene_region:52994945-53000265 transcript_region:SL2.40ch03:52994945..53000265- functional_description:"Chromosome 06 contig 1 DNA sequence (AHRD V1 *-*- Q016K0_OSTTA)"; NbS00010171g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0.25|0.25|1|1|4|241|200; (*GB) gi|359479516|ref|XP_002275749.2| (e_value=4e-79) PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|P27788|FER3_MAIZE (e_value=1e-64) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=7e-62) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=6e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00010171g0006.1 protein AED:0.15 eAED:0.15 QI:86|1|1|1|0.6|0.5|6|474|216; (*GB) gi|192910762|gb|ACF06489.1| (e_value=6e-130) ribosomal protein L10a [Elaeis guineensis];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=2e-129) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=2e-130) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc01g009520.2.1 (e_value=3e-138) genomic_reference:SL2.40ch01 gene_region:3780910-3784239 transcript_region:SL2.40ch01:3780910..3784239+ go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00027173g0013.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.66|3|0|209; (*GB) gi|356511401|ref|XP_003524415.1| (e_value=3e-23) PREDICTED: transcription factor MYB3-like [Glycine max];; (*SWP) sp|Q9FG68|RAX1_ARATH (e_value=1e-20) Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1;; (*TAIR) AT5G23000.1 (e_value=7e-22) | Symbols: RAX1, MYB37, ATMYB37 | myb domain protein 37 | chr5:7696234-7697712 FORWARD LENGTH=329;; (*ITAG) Solyc08g065910.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51457430-51458883 transcript_region:SL2.40ch08:51457430..51458883- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B7UCQ7_PANGI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00027173g0010.1 protein AED:0.42 eAED:0.42 QI:39|1|0.8|1|0.5|0.8|5|205|189; (*GB) gi|388520377|gb|AFK48250.1| (e_value=3e-88) unknown [Lotus japonicus];; (*SWP) sp|Q9SZE4|VP322_ARATH (e_value=4e-83) Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1;; (*TAIR) AT4G29160.2 (e_value=6e-85) | Symbols: SNF7.1 | SNF7 family protein | chr4:14381350-14382342 FORWARD LENGTH=192;; (*ITAG) Solyc08g065900.2.1 (e_value=8e-94) genomic_reference:SL2.40ch08 gene_region:51450546-51456933 transcript_region:SL2.40ch08:51450546..51456933+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00048225g0006.1 protein AED:0.20 eAED:0.21 QI:0|0.88|0.7|1|0.66|0.5|10|271|775; (*GB) gi|225428898|ref|XP_002285358.1| (e_value=0.0) PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O04130|SERA_ARATH (e_value=0.0) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=0.0) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc10g049890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:42590722-42594292 transcript_region:SL2.40ch10:42590722..42594292+ go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00005540g0006.1 protein AED:0.35 eAED:0.35 QI:216|0.71|0.62|0.87|0.42|0.5|8|0|633; (*GB) gi|225424512|ref|XP_002285238.1| (e_value=0.0) PREDICTED: putative phagocytic receptor 1b [Vitis vinifera];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=1e-93) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc05g054040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63167515-63172773 transcript_region:SL2.40ch05:63167515..63172773- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00031903g0009.1 protein AED:0.29 eAED:0.31 QI:179|0.5|0.57|1|0.33|0.28|7|242|233; (*GB) gi|255570175|ref|XP_002526048.1| (e_value=6e-136) protein with unknown function [Ricinus communis];; (*SWP) sp|Q38922|RAB1B_ARATH (e_value=6e-133) Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1;; (*TAIR) AT4G35860.1 (e_value=5e-134) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988839 REVERSE LENGTH=211;; (*ITAG) Solyc02g093530.2.1 (e_value=8e-143) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00031903g0005.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|1|1|2|0|140; (*ITAG) Solyc02g093560.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48962535-48962960 transcript_region:SL2.40ch02:48962535..48962960+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013177 Protein of unknown function DUF1713, mitochondria "; NbS00031903g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|225451024|ref|XP_002284899.1| (e_value=1e-72) PREDICTED: E3 ubiquitin-protein ligase ATL6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=5e-56) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=4e-57) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=3e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00054682g0001.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|0|0|2|0|241; (*GB) gi|371539268|gb|AEL17349.2| (e_value=2e-53) TCP2 [Petunia x hybrida];; (*SWP) sp|Q9SBV6|CYCLD_ANTML (e_value=2e-31) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1;; (*TAIR) AT1G67260.2 (e_value=6e-29) | Symbols: TCP1 | TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351;; (*ITAG) Solyc02g089830.1.1 (e_value=3e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46104349-46105156 transcript_region:SL2.40ch02:46104349..46105156- functional_description:"CYCLOIDEA-like protein (Fragment) (AHRD V1 *-*- Q84RB2_9LAMI); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00013160g0005.1 protein AED:0.05 eAED:0.05 QI:162|0.85|1|1|1|1|8|0|346; (*GB) gi|357502907|ref|XP_003621742.1| (e_value=0.0) Sphingosine-1-phosphate lyase [Medicago truncatula];; (*SWP) sp|Q9C509|SGPL_ARATH (e_value=1e-171) Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1;; (*TAIR) AT1G27980.1 (e_value=8e-173) | Symbols: DPL1, ATDPL1 | dihydrosphingosine phosphate lyase | chr1:9748812-9752618 FORWARD LENGTH=544;; (*ITAG) Solyc05g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12526930-12533509 transcript_region:SL2.40ch05:12526930..12533509+ go_terms:GO:0008117 functional_description:"Sphingosine-1-phosphate lyase (AHRD V1 **-* Q549V9_ARATH); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0008117 NbS00013160g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|57013986|ref|YP_173458.1| (e_value=4e-43) hypothetical protein NitaMp120 [Nicotiana tabacum];; (*ITAG) Solyc11g039990.1.1 (e_value=7e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:28096317-28096706 transcript_region:SL2.40ch11:28096317..28096706- functional_description:"Unknown Protein (AHRD V1)"; NbS00013160g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|3|0|149; (*GB) gi|114107125|ref|YP_740109.1| (e_value=8e-27) RNA polymerase beta subunit [Daucus carota];; (*SWP) sp|Q0G9X0|RPOB_DAUCA (e_value=2e-28) DNA-directed RNA polymerase subunit beta OS=Daucus carota GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=6e-26) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072; NbS00019813g0007.1 protein AED:0.04 eAED:0.06 QI:0|0|0.5|1|1|1|2|134|246; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=7e-150) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92980|APR3_ARATH (e_value=1e-131) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2;; (*TAIR) AT4G21990.1 (e_value=8e-133) | Symbols: APR3, PRH-26, PRH26, ATAPR3 | APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458;; (*ITAG) Solyc02g080640.2.1 (e_value=1e-152) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00019813g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|0.2|0.5|6|0|136; (*GB) gi|224113703|ref|XP_002316547.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=1e-31) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G04470.1 (e_value=8e-33) | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:2227963-2229226 REVERSE LENGTH=190;; (*ITAG) Solyc03g031600.2.1 (e_value=3e-54) genomic_reference:SL2.40ch03 gene_region:8366728-8371789 transcript_region:SL2.40ch03:8366728..8371789- go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein PMP22 (AHRD V1 ***- B6TFH7_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00057613g0004.1 protein AED:0.17 eAED:0.17 QI:204|0.72|0.75|0.91|0.54|0.66|12|377|437; (*GB) gi|225445298|ref|XP_002281302.1| (e_value=3e-168) PREDICTED: probable serine incorporator-like [Vitis vinifera];; (*SWP) sp|Q9QZI8|SERC1_MOUSE (e_value=2e-20) Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1;; (*TAIR) AT3G24460.1 (e_value=1e-157) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:8886160-8889717 REVERSE LENGTH=409;; (*ITAG) Solyc01g097650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80185645-80189311 transcript_region:SL2.40ch01:80185645..80189311+ go_terms:GO:0016020 functional_description:"Serine incorporator 1 (AHRD V1 **-- B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0016020 NbS00026731g0003.1 protein AED:0.21 eAED:0.22 QI:0|1|0.9|1|1|1|10|193|534; (*GB) gi|47078321|gb|AAT09809.1| (e_value=0.0) tocopherol cyclase [Solanum tuberosum];; (*SWP) sp|Q94FY7|TOCC_ARATH (e_value=0.0) Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1;; (*TAIR) AT4G32770.1 (e_value=0.0) | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | chr4:15804981-15807790 FORWARD LENGTH=488;; (*ITAG) Solyc08g068570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54916147-54923788 transcript_region:SL2.40ch08:54916147..54923788+ go_terms:GO:0009976 functional_description:"Tocopherol cyclase (AHRD V1 **** Q6E6T1_SOLTU)"; GO:0009976 NbS00049042g0011.1 protein AED:0.23 eAED:0.24 QI:429|0.66|0.69|0.92|0.91|0.84|13|0|653; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=0.0) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=0.0) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc01g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:232356-237013 transcript_region:SL2.40ch01:232356..237013- go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00034810g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|1|8|0|773; (*GB) gi|225423802|ref|XP_002277905.1| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT1G26150.1 (e_value=0.0) | Symbols: ATPERK10, PERK10 | proline-rich extensin-like receptor kinase 10 | chr1:9039790-9042873 REVERSE LENGTH=762;; (*ITAG) Solyc05g010140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4310407-4314499 transcript_region:SL2.40ch05:4310407..4314499- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00034810g0012.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|1|1|5|0|263; (*GB) gi|255546931|ref|XP_002514523.1| (e_value=2e-79) catalytic, putative [Ricinus communis];; (*SWP) sp|Q1LUI2|HDDC2_DANRE (e_value=5e-38) HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1;; (*TAIR) AT1G26160.1 (e_value=2e-80) | Symbols: | Metal-dependent phosphohydrolase | chr1:9044784-9046945 REVERSE LENGTH=258;; (*ITAG) Solyc05g010150.2.1 (e_value=5e-99) genomic_reference:SL2.40ch05 gene_region:4321997-4328040 transcript_region:SL2.40ch05:4321997..4328040- go_terms:GO:0005515 functional_description:"HD domain containing protein (AHRD V1 ***- B6TWI3_MAIZE); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0005515 NbS00034810g0011.1 protein AED:0.14 eAED:0.14 QI:2|0.90|0.66|0.91|1|0.91|12|0|1218; (*GB) gi|225423806|ref|XP_002280418.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 9-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SX33|ALA9_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1;; (*TAIR) AT1G68710.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200;; (*ITAG) Solyc05g010120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4302127-4308688 transcript_region:SL2.40ch05:4302127..4308688+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1HB29_PARBA); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00007972g0020.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|1|1|3|0|145; (*GB) gi|407353|dbj|BAA04633.1| (e_value=1e-68) PSI-H precursor [Nicotiana sylvestris];; (*SWP) sp|O04006|PSAH_BRARA (e_value=1e-56) Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1;; (*TAIR) AT3G16140.1 (e_value=2e-56) | Symbols: PSAH-1 | photosystem I subunit H-1 | chr3:5468670-5469415 REVERSE LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=5e-69) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00007972g0003.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.71|1|1|7|0|397; (*GB) gi|22475195|gb|AAM97321.1| (e_value=2e-150) homeodomain protein GhHOX1 [Gossypium hirsutum];; (*SWP) sp|P46607|HGL2_ARATH (e_value=9e-118) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.1 (e_value=7e-119) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747;; (*ITAG) Solyc03g120620.2.1 (e_value=7e-150) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00007972g0022.1 protein AED:0.13 eAED:0.14 QI:301|0.88|0.89|0.94|0.94|0.89|19|0|1006; (*GB) gi|225455135|ref|XP_002267350.1| (e_value=0.0) PREDICTED: golgin candidate 5-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q0WVL7|GOGC5_ARATH (e_value=0.0) Golgin candidate 5 OS=Arabidopsis thaliana GN=GC5 PE=1 SV=1;; (*TAIR) AT1G79830.3 (e_value=0.0) | Symbols: GC5 | golgin candidate 5 | chr1:30028110-30033508 REVERSE LENGTH=956;; (*ITAG) Solyc06g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38239615-38254781 transcript_region:SL2.40ch06:38239615..38254781- go_terms:GO:0005515 functional_description:"TATA element modulatory factor 1 (AHRD V1 *--- Q6DEI1_DANRE)"; GO:0005515 NbS00007972g0021.1 protein AED:0.18 eAED:0.19 QI:0|0.92|0.86|1|0.85|0.8|15|150|516; (*GB) gi|224054374|ref|XP_002298228.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2V4B9|PLST3_ARATH (e_value=0.0) Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2;; (*TAIR) AT1G79820.2 (e_value=0.0) | Symbols: SGB1 | Major facilitator superfamily protein | chr1:30022581-30026771 REVERSE LENGTH=495;; (*ITAG) Solyc06g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38231924-38238976 transcript_region:SL2.40ch06:38231924..38238976- go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 **** GTR3_CANFA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00007972g0032.1 protein AED:0.25 eAED:0.25 QI:0|0.77|0.5|1|0.77|0.9|10|0|571; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=0.0) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=0.0) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=0.0) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc06g066650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38269707-38272720 transcript_region:SL2.40ch06:38269707..38272720- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00007972g0030.1 protein AED:0.32 eAED:0.36 QI:234|0.33|0.71|1|0.66|0.71|7|298|167; (*GB) gi|224070909|ref|XP_002303292.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LCA1|TMP14_ARATH (e_value=6e-18) Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2;; (*TAIR) AT1G52220.1 (e_value=2e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=156;; (*ITAG) Solyc06g066620.2.1 (e_value=4e-56) genomic_reference:SL2.40ch06 gene_region:38256435-38259214 transcript_region:SL2.40ch06:38256435..38259214- functional_description:"Threonine endopeptidase (AHRD V1 *--- B6SNJ7_MAIZE)"; NbS00007972g0033.1 protein AED:0.43 eAED:0.43 QI:262|1|1|1|0|0|2|0|80; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=8e-37) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=1e-33) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT3G24620.1 (e_value=7e-35) | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotide exchange factor 8 | chr3:8980695-8982793 REVERSE LENGTH=523;; (*ITAG) Solyc06g066650.2.1 (e_value=4e-42) genomic_reference:SL2.40ch06 gene_region:38269707-38272720 transcript_region:SL2.40ch06:38269707..38272720- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00005949g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|417; (*GB) gi|225443837|ref|XP_002266982.1| (e_value=0.0) PREDICTED: phospholipase A1-IIgamma [Vitis vinifera];; (*SWP) sp|A2ZW16|PLA1_ORYSJ (e_value=3e-171) Phospholipase A1-II 1 OS=Oryza sativa subsp. japonica GN=Os01g0651100 PE=2 SV=2;; (*TAIR) AT4G18550.1 (e_value=1e-166) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36747681-36749243 transcript_region:SL2.40ch02:36747681..36749243+ go_terms:GO:0006629 functional_description:"Lipase-like protein (AHRD V1 ***- Q8LF19_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00005949g0002.1 protein AED:0.02 eAED:0.02 QI:18|1|1|1|0.5|0.4|5|87|391; (*GB) gi|225443843|ref|XP_002267261.1| (e_value=3e-122) PREDICTED: GDSL esterase/lipase At1g28580 [Vitis vinifera];; (*SWP) sp|Q9FXJ2|GDL7_ARATH (e_value=1e-118) GDSL esterase/lipase At1g28580 OS=Arabidopsis thaliana GN=At1g28580 PE=2 SV=1;; (*TAIR) AT1G28580.1 (e_value=1e-119) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10044603-10046379 REVERSE LENGTH=390;; (*ITAG) Solyc10g008720.2.1 (e_value=8e-174) genomic_reference:SL2.40ch10 gene_region:2792780-2796438 transcript_region:SL2.40ch10:2792780..2796438- go_terms:GO:0004064,GO:0050525 functional_description:"GDSL esterase/lipase At1g28580 (AHRD V1 ***- GDL7_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004064,GO:0050525 NbS00005949g0011.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0|0|2|0|120; (*ITAG) Solyc01g111490.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00020244g0001.1 protein AED:0.31 eAED:0.31 QI:493|1|0.87|1|0.28|0.25|8|0|186; (*GB) gi|350538261|ref|NP_001234334.1| (e_value=2e-73) guanylyl cyclase [Solanum lycopersicum];; (*TAIR) AT5G05930.2 (e_value=2e-58) | Symbols: GC1 | guanylyl cyclase 1 | chr5:1780270-1782532 REVERSE LENGTH=210;; (*ITAG) Solyc03g079850.2.1 (e_value=5e-76) genomic_reference:SL2.40ch03 gene_region:45200903-45215683 transcript_region:SL2.40ch03:45200903..45215683- functional_description:"Guanylyl cyclase (AHRD V1 **-- A0FK54_SOLLC); contains Interpro domain(s) IPR018616 Guanylyl cyclase "; NbS00020244g0005.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0|0.66|0|0.33|3|0|70 NbS00003704g0004.1 protein AED:0.24 eAED:0.24 QI:132|1|0.91|1|0.90|1|12|0|564; (*GB) gi|45476407|dbj|BAD12556.1| (e_value=0.0) RIO kinase [Nicotiana tabacum];; (*SWP) sp|Q54VD8|RIO1_DICDI (e_value=2e-144) Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum GN=rio1 PE=3 SV=1;; (*TAIR) AT5G37350.1 (e_value=0.0) | Symbols: | Serine/threonine-protein kinase Rio1 | chr5:14793037-14795828 FORWARD LENGTH=531;; (*ITAG) Solyc08g080850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61201523-61207660 transcript_region:SL2.40ch08:61201523..61207660+ go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase RIO1 (AHRD V1 **** Q75XU7_TOBAC); contains Interpro domain(s) IPR017407 Serine/threonine-protein kinase Rio1 "; GO:0004672 NbS00003704g0002.1 protein AED:0.38 eAED:0.44 QI:0|0|0|0.5|1|1|4|0|268; (*ITAG) Solyc08g080860.2.1 (e_value=7e-43) genomic_reference:SL2.40ch08 gene_region:61208256-61210051 transcript_region:SL2.40ch08:61208256..61210051- functional_description:"Unknown Protein (AHRD V1)"; NbS00009651g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|246; (*GB) gi|224116342|ref|XP_002317274.1| (e_value=8e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT1G61740.1 (e_value=6e-58) | Symbols: | Sulfite exporter TauE/SafE family protein | chr1:22798365-22801020 REVERSE LENGTH=458;; (*ITAG) Solyc03g031530.2.1 (e_value=1e-98) genomic_reference:SL2.40ch03 gene_region:8312495-8317154 transcript_region:SL2.40ch03:8312495..8317154- go_terms:GO:0005515 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0005515 NbS00009651g0006.1 protein AED:0.34 eAED:0.34 QI:46|0|0.5|1|0|0.5|2|0|108; (*GB) gi|4586878|dbj|BAA76516.1| (e_value=2e-54) HR7 [Hyoscyamus niger];; (*ITAG) Solyc03g031510.2.1 (e_value=4e-23) genomic_reference:SL2.40ch03 gene_region:8308152-8308759 transcript_region:SL2.40ch03:8308152..8308759- functional_description:"HR7 protein (AHRD V1 ***- Q9SXP0_HYONI); contains Interpro domain(s) IPR009632 Putative metallocarboxypeptidase inhibitor "; NbS00009651g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|86 NbS00009651g0106.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|128 NbS00009651g0102.1 protein AED:0.34 eAED:0.34 QI:79|0.75|0.6|1|1|1|5|0|264 NbS00009651g0103.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|1|2|392|381 NbS00042576g0010.1 protein AED:0.44 eAED:0.48 QI:0|0|0|1|0|0.66|3|0|414; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=8e-91) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=3e-12) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*ITAG) Solyc02g027080.1.1 (e_value=5e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00042576g0011.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|8|0|1220; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=0.0) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=7e-84) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=9e-57) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc02g027080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00046879g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0|2|0|689; (*GB) gi|225424089|ref|XP_002283405.1| (e_value=6e-147) PREDICTED: uncharacterized protein LOC100250808 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=8e-60) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc04g007460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1123166-1125655 transcript_region:SL2.40ch04:1123166..1125655- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00015923g0008.1 protein AED:0.29 eAED:0.29 QI:254|1|0.90|1|0.6|0.63|11|0|360; (*GB) gi|225462436|ref|XP_002264436.1| (e_value=0.0) PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9C5J8|OEP80_ARATH (e_value=1e-68) Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1;; (*TAIR) AT3G44160.1 (e_value=0.0) | Symbols: | Outer membrane OMP85 family protein | chr3:15889225-15891814 REVERSE LENGTH=362;; (*ITAG) Solyc11g071890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52301894-52310067 transcript_region:SL2.40ch11:52301894..52310067- go_terms:GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- A2C741_PROM3); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00015923g0009.1 protein AED:0.02 eAED:0.09 QI:0|0|0|1|0|0|5|0|649; (*GB) gi|359491256|ref|XP_003634250.1| (e_value=7e-145) PREDICTED: receptor-like protein kinase HSL1 [Vitis vinifera];; (*SWP) sp|Q9SH71|Y1421_ARATH (e_value=2e-49) Putative inactive receptor-like protein kinase At1g64210 OS=Arabidopsis thaliana GN=At1g64210 PE=3 SV=1;; (*TAIR) AT1G64210.1 (e_value=1e-50) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23831033-23832863 FORWARD LENGTH=587;; (*ITAG) Solyc11g071880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52298447-52301148 transcript_region:SL2.40ch11:52298447..52301148+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00033652g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|308; (*GB) gi|225458293|ref|XP_002282654.1| (e_value=2e-139) PREDICTED: uncharacterized protein At1g01500-like [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=2e-42) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G75180.3 (e_value=3e-107) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:28216150-28217911 REVERSE LENGTH=315;; (*ITAG) Solyc04g080300.2.1 (e_value=7e-172) genomic_reference:SL2.40ch04 gene_region:62125971-62129677 transcript_region:SL2.40ch04:62125971..62129677- functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00001023g0003.1 protein AED:0.21 eAED:0.21 QI:247|0.85|0.87|1|0.85|0.87|8|0|217; (*GB) gi|225452785|ref|XP_002283325.1| (e_value=2e-99) PREDICTED: protein SET [Vitis vinifera];; (*SWP) sp|Q01105|SET_HUMAN (e_value=3e-40) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G18800.1 (e_value=8e-95) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc02g067370.2.1 (e_value=2e-114) genomic_reference:SL2.40ch02 gene_region:32143390-32150786 transcript_region:SL2.40ch02:32143390..32150786- go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00024415g0003.1 protein AED:0.15 eAED:0.15 QI:170|0.5|0.66|1|0|0.33|3|417|80; (*GB) gi|294460357|gb|ADE75759.1| (e_value=5e-17) unknown [Picea sitchensis]; NbS00060165g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|0.75|8|0|1111; (*GB) gi|147857410|emb|CAN82853.1| (e_value=0.0) hypothetical protein VITISV_028768 [Vitis vinifera];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=5e-43) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT1G65920.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:24525267-24529204 REVERSE LENGTH=1006;; (*ITAG) Solyc02g081250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00004947g0001.1 protein AED:0.05 eAED:0.08 QI:0|1|0.5|1|0|0|2|445|779; (*GB) gi|359488988|ref|XP_003633851.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8IYB8|SUV3_HUMAN (e_value=2e-132) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1;; (*TAIR) AT5G39840.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, mitochondrial, putative | chr5:15946769-15949186 FORWARD LENGTH=776;; (*ITAG) Solyc11g011460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4515208-4519004 transcript_region:SL2.40ch11:4515208..4519004+ go_terms:GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q10D00_ORYSJ); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00004947g0011.1 protein AED:0.62 eAED:0.77 QI:0|0|0|0.66|0|0|3|0|146 NbS00022582g0002.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|1|0.5|4|0|409; (*GB) gi|295841593|dbj|BAJ07177.1| (e_value=0.0) MdVOZ1 [Malus x domestica];; (*TAIR) AT1G28520.2 (e_value=3e-161) | Symbols: VOZ1 | vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486;; (*ITAG) Solyc10g008880.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2920272-2924119 transcript_region:SL2.40ch10:2920272..2924119- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)"; GO:0016563 NbS00034540g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.78|0.73|1|0.71|0.8|15|0|484; (*GB) gi|225423472|ref|XP_002274189.1| (e_value=0.0) PREDICTED: UPF0420 protein C16orf58 homolog [Vitis vinifera];; (*SWP) sp|Q91W34|CP058_MOUSE (e_value=2e-59) UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT1G13770.1 (e_value=4e-176) | Symbols: RUS3 | Protein of unknown function, DUF647 | chr1:4721717-4724345 FORWARD LENGTH=440;; (*ITAG) Solyc05g012290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5568469-5575841 transcript_region:SL2.40ch05:5568469..5575841+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbS00034540g0003.1 protein AED:0.45 eAED:0.48 QI:0|0|0|0.5|1|1|4|0|187; (*GB) gi|357487619|ref|XP_003614097.1| (e_value=2e-56) Ureide permease [Medicago truncatula];; (*SWP) sp|Q41706|UPSA3_VIGUN (e_value=4e-53) Probable ureide permease A3 (Fragment) OS=Vigna unguiculata GN=A3 PE=2 SV=2;; (*TAIR) AT2G03590.1 (e_value=3e-52) | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:1095129-1096711 FORWARD LENGTH=390;; (*ITAG) Solyc05g012310.2.1 (e_value=2e-60) genomic_reference:SL2.40ch05 gene_region:5580165-5584303 transcript_region:SL2.40ch05:5580165..5584303- go_terms:GO:0005274,GO:0015505 functional_description:"Ureide permease 2 (AHRD V1 ***- B6U6B9_MAIZE); contains Interpro domain(s) IPR009834 Fatty acid elongase 3-ketoacyl-CoA synthase 1 "; GO:0005274,GO:0015505 NbS00015437g0004.1 protein AED:0.00 eAED:0.00 QI:191|1|1|1|1|1|2|257|233; (*GB) gi|359486390|ref|XP_002272668.2| (e_value=2e-62) PREDICTED: transcription factor bHLH51-like [Vitis vinifera];; (*SWP) sp|Q9XEF0|BH051_ARATH (e_value=9e-41) Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1;; (*TAIR) AT2G40200.1 (e_value=7e-42) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:16791098-16792027 FORWARD LENGTH=254;; (*ITAG) Solyc03g095980.2.1 (e_value=3e-80) genomic_reference:SL2.40ch03 gene_region:51228639-51229402 transcript_region:SL2.40ch03:51228639..51229402- go_terms:GO:0003700 functional_description:"Transcription factor bHLH51 (AHRD V1 **-* BH051_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00005970g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|431; (*GB) gi|224132946|ref|XP_002327918.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q9SN22|SCL32_ARATH (e_value=2e-125) Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1;; (*TAIR) AT3G49950.1 (e_value=2e-126) | Symbols: | GRAS family transcription factor | chr3:18522570-18523802 FORWARD LENGTH=410;; (*ITAG) Solyc07g052960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58690695-58691984 transcript_region:SL2.40ch07:58690695..58691984+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9MXU3_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00008503g0003.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|507; (*GB) gi|225457564|ref|XP_002272601.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g01860-like [Vitis vinifera];; (*SWP) sp|Q5XET4|PP142_ARATH (e_value=5e-164) Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana GN=EMB975 PE=2 SV=1;; (*TAIR) AT2G01860.1 (e_value=4e-165) | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:388283-389743 FORWARD LENGTH=486;; (*ITAG) Solyc02g070010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34384667-34386037 transcript_region:SL2.40ch02:34384667..34386037- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LPW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008503g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|3|0|338; (*GB) gi|297795735|ref|XP_002865752.1| (e_value=1e-103) UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LTA3|U91C1_ARATH (e_value=2e-103) UDP-glycosyltransferase 91C1 OS=Arabidopsis thaliana GN=UGT91C1 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=1e-104) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc02g070020.1.1 (e_value=3e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34387711-34389150 transcript_region:SL2.40ch02:34387711..34389150- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00008503g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0.25|1|1|1|4|333|978; (*GB) gi|225444065|ref|XP_002264039.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like isoform 1 [Vitis vinifera];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g070000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34380105-34384384 transcript_region:SL2.40ch02:34380105..34384384+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00008503g0005.1 protein AED:0.48 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|255564373|ref|XP_002523183.1| (e_value=2e-57) protein binding protein, putative [Ricinus communis];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=1e-49) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=6e-51) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g070000.2.1 (e_value=1e-57) genomic_reference:SL2.40ch02 gene_region:34380105-34384384 transcript_region:SL2.40ch02:34380105..34384384+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00008513g0009.1 protein AED:0.49 eAED:0.52 QI:0|0.8|0.16|1|1|1|6|0|161; (*GB) gi|255584390|ref|XP_002532928.1| (e_value=5e-80) Transporter ATM1, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q9LVM1|AB25B_ARATH (e_value=2e-73) ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1;; (*TAIR) AT5G58270.1 (e_value=1e-74) | Symbols: STA1, ATATM3, ATM3 | ABC transporter of the mitochondrion 3 | chr5:23562168-23567040 FORWARD LENGTH=728;; (*ITAG) Solyc09g055350.2.1 (e_value=2e-84) genomic_reference:SL2.40ch09 gene_region:35636998-35672737 transcript_region:SL2.40ch09:35636998..35672737+ go_terms:GO:0015232 functional_description:"ABC transporter ATP-binding/permease protein (AHRD V1 **** A3SXQ3_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015232 NbS00008513g0010.1 protein AED:0.40 eAED:0.80 QI:0|0|0|0.33|1|1|3|0|101 NbS00004148g0005.1 protein AED:0.42 eAED:0.85 QI:0|0|0|0.5|1|1|4|0|227; (*GB) gi|7437805|pir||T08576 (e_value=4e-103) phenylalanine-tRNA ligase (EC 6.1.1.20) beta chain T22F8.180 [similarity] - Arabidopsis thaliana;; (*SWP) sp|Q9T034|SYFA_ARATH (e_value=5e-104) Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3;; (*TAIR) AT4G39280.1 (e_value=3e-105) | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485;; (*ITAG) Solyc10g007060.2.1 (e_value=1e-110) genomic_reference:SL2.40ch10 gene_region:1440865-1447795 transcript_region:SL2.40ch10:1440865..1447795+ go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 **** B6SS66_MAIZE); contains Interpro domain(s) IPR002319 Phenylalanyl-tRNA synthetase, class IIc-related "; GO:0005515,GO:0004826 NbS00004148g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0|2|0|269; (*GB) gi|302141969|emb|CBI19172.3| (e_value=8e-117) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=6e-107) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT1G34790.1 (e_value=4e-108) | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12763953-12765489 FORWARD LENGTH=303;; (*ITAG) Solyc04g074320.1.1 (e_value=5e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57920388-57921358 transcript_region:SL2.40ch04:57920388..57921358+ go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *--- D7KHP2_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00004148g0009.1 protein AED:0.10 eAED:0.11 QI:99|0.8|0.83|1|1|1|6|62|288; (*GB) gi|359492447|ref|XP_003634414.1| (e_value=4e-59) PREDICTED: uncharacterized protein LOC100253997 [Vitis vinifera];; (*SWP) sp|Q76LC6|RBM24_DANRE (e_value=1e-30) RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1;; (*TAIR) AT1G78260.1 (e_value=3e-50) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:29447317-29450181 FORWARD LENGTH=287;; (*ITAG) Solyc04g074310.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:57910504-57917099 transcript_region:SL2.40ch04:57910504..57917099+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--- Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00006964g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|460; (*GB) gi|225456635|ref|XP_002270193.1| (e_value=3e-120) PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9D832|DNJB4_MOUSE (e_value=3e-47) DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1;; (*TAIR) AT3G47940.1 (e_value=2e-97) | Symbols: | DNAJ heat shock family protein | chr3:17688232-17689402 REVERSE LENGTH=350;; (*ITAG) Solyc06g071110.2.1 (e_value=5e-165) genomic_reference:SL2.40ch06 gene_region:40083683-40090619 transcript_region:SL2.40ch06:40083683..40090619- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 3 (AHRD V1 ***- DNAJ3_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00006964g0008.1 protein AED:0.23 eAED:0.23 QI:394|0.87|1|1|0.93|0.88|17|339|721; (*GB) gi|255552828|ref|XP_002517457.1| (e_value=0.0) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|P23980|PMA2_SOLLC (e_value=0.0) Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc06g071100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00030526g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.95|0.88|1|1|1|25|638|848; (*GB) gi|225442715|ref|XP_002284882.1| (e_value=0.0) PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit [Vitis vinifera];; (*SWP) sp|Q9DBB4|NAA16_MOUSE (e_value=1e-163) N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Mus musculus GN=Naa16 PE=2 SV=1;; (*TAIR) AT1G80410.1 (e_value=0.0) | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897;; (*ITAG) Solyc03g120350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62825268-62842470 transcript_region:SL2.40ch03:62825268..62842470+ go_terms:GO:0005515,GO:0004596 functional_description:"N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V1 **-* NAA16_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0004596 NbS00028700g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|0.5|0.33|0.5|4|0|215; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=5e-57) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.3 (e_value=4e-38) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=265;; (*ITAG) Solyc03g116780.2.1 (e_value=8e-72) genomic_reference:SL2.40ch03 gene_region:60110746-60114311 transcript_region:SL2.40ch03:60110746..60114311+ functional_description:"CUE domain containing protein (AHRD V1 **-- B6TCB4_MAIZE); contains Interpro domain(s) IPR009060 UBA-like "; NbS00028201g0010.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0|0.5|2|184|388; (*GB) gi|147799468|emb|CAN70606.1| (e_value=0.0) hypothetical protein VITISV_040196 [Vitis vinifera];; (*TAIR) AT5G11730.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc08g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51408881-51413600 transcript_region:SL2.40ch08:51408881..51413600- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00028201g0009.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0.6|0.8|0.5|0.6|5|319|357; (*GB) gi|296081608|emb|CBI20613.3| (e_value=3e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55340.1 (e_value=2e-40) | Symbols: | Protein of unknown function (DUF1639) | chr1:20652605-20653469 FORWARD LENGTH=205;; (*ITAG) Solyc08g065840.2.1 (e_value=5e-59) genomic_reference:SL2.40ch08 gene_region:51392391-51393993 transcript_region:SL2.40ch08:51392391..51393993+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00028201g0012.1 protein AED:0.64 eAED:0.75 QI:0|0|0|1|1|1|5|0|103 NbS00034983g0007.1 protein AED:0.03 eAED:0.04 QI:0|0|0.5|1|0|0.5|2|383|371; (*GB) gi|225445466|ref|XP_002285124.1| (e_value=2e-129) PREDICTED: chaperone protein dnaJ 49 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FH28|DNJ49_ARATH (e_value=2e-68) Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2;; (*TAIR) AT3G57340.2 (e_value=1e-102) | Symbols: | Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) | chr3:21219175-21220278 FORWARD LENGTH=367;; (*ITAG) Solyc12g099510.1.1 (e_value=2e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64971202-64984594 transcript_region:SL2.40ch12:64971202..64984594- go_terms:GO:0005488,GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0005488,GO:0006457,GO:0031072 NbS00034983g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.6|0.8|1|1|5|231|179; (*GB) gi|225434504|ref|XP_002275653.1| (e_value=2e-30) PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Vitis vinifera];; (*SWP) sp|P0C895|Y2010_ARATH (e_value=4e-28) LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1;; (*TAIR) AT2G30105.1 (e_value=4e-29) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). | chr2:12849855-12851908 FORWARD LENGTH=367;; (*ITAG) Solyc06g007250.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:1304942-1310377 transcript_region:SL2.40ch06:1304942..1310377+ go_terms:GO:0019903 functional_description:"Leucine-rich repeat family protein (AHRD V1 ***- D7M0N4_ARALY); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0019903 NbS00035977g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|273; (*GB) gi|225439781|ref|XP_002276042.1| (e_value=9e-169) PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=1e-141) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=3e-164) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc09g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:793123-799599 transcript_region:SL2.40ch09:793123..799599- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00008864g0003.1 protein AED:0.27 eAED:0.27 QI:174|0|0.5|0.5|0|0|2|167|52 NbS00008864g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|115; (*ITAG) Solyc07g054310.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59985789-59986169 transcript_region:SL2.40ch07:59985789..59986169+ functional_description:"Gty37 protein (AHRD V1 ***- Q65A67_GERHY)"; NbS00000670g0008.1 protein AED:0.24 eAED:0.41 QI:0|0.57|0.37|0.87|0.42|0.37|8|0|331; (*GB) gi|357521589|ref|XP_003631083.1| (e_value=6e-75) Cell differentiation protein RCD1-like protein [Medicago truncatula];; (*SWP) sp|Q5PQL2|RCD1_RAT (e_value=6e-48) Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1;; (*TAIR) AT3G20800.1 (e_value=3e-65) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc12g014400.1.1 (e_value=3e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; NbS00012389g0016.1 protein AED:0.17 eAED:0.17 QI:0|0.6|0.5|1|0.8|0.66|6|9|414; (*GB) gi|224071087|ref|XP_002303355.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPF3|PME68_ARATH (e_value=0.0) Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1;; (*TAIR) AT5G47500.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:19271262-19272845 REVERSE LENGTH=362;; (*ITAG) Solyc08g078640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59566520-59570592 transcript_region:SL2.40ch08:59566520..59570592- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D7MP41_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00012389g0017.1 protein AED:0.34 eAED:0.34 QI:12|0.2|0.16|0.66|0.4|0.5|6|249|521; (*GB) gi|359480183|ref|XP_002278072.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258835 [Vitis vinifera];; (*TAIR) AT3G62330.1 (e_value=4e-78) | Symbols: | Zinc knuckle (CCHC-type) family protein | chr3:23063329-23065419 REVERSE LENGTH=479;; (*ITAG) Solyc08g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59546613-59549799 transcript_region:SL2.40ch08:59546613..59549799- go_terms:GO:0008270 functional_description:"Zinc knuckle (CCHC-type) family protein (AHRD V1 ***- D7LSW2_ARALY); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00012389g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|326498999|dbj|BAK05990.1| (e_value=1e-63) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=2e-19) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT3G12410.1 (e_value=6e-26) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc08g078620.1.1 (e_value=1e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59553534-59554157 transcript_region:SL2.40ch08:59553534..59554157+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00012389g0002.1 protein AED:0.07 eAED:0.07 QI:112|1|1|1|0.33|0.25|4|561|545; (*GB) gi|297737393|emb|CBI26594.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SY07|PP302_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1;; (*TAIR) AT4G02820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:1258581-1260265 FORWARD LENGTH=532;; (*ITAG) Solyc06g005140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:165496-169137 transcript_region:SL2.40ch06:165496..169137- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3C7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012389g0018.1 protein AED:0.10 eAED:0.10 QI:234|1|0.75|1|1|1|4|0|234; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=2e-100) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=1e-83) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=8e-85) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=8e-133) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00012389g0025.1 protein AED:0.13 eAED:0.15 QI:0|0.83|0.69|1|0.91|0.92|13|0|1477; (*GB) gi|359495990|ref|XP_003635128.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255037 [Vitis vinifera];; (*SWP) sp|Q91XT4|SC16B_MOUSE (e_value=3e-30) Protein transport protein Sec16B OS=Mus musculus GN=Sec16b PE=1 SV=3;; (*TAIR) AT5G47490.1 (e_value=0.0) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1919118-1928036 transcript_region:SL2.40ch08:1919118..1928036- go_terms:GO:0032259 functional_description:"COPII coat assembly protein SEC16 (AHRD V1 *-*- C5FKS9_NANOT)"; GO:0032259 NbS00049349g0003.1 protein AED:0.20 eAED:0.31 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|255567282|ref|XP_002524622.1| (e_value=6e-37) inorganic phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=3e-35) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=2e-36) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc06g034200.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20519555-20521159 transcript_region:SL2.40ch06:20519555..20521159+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00049349g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.14|0.85|0.5|0.42|7|0|407; (*GB) gi|81238594|gb|ABB60055.1| (e_value=3e-135) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|P07728|GLUA1_ORYSJ (e_value=4e-98) Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2;; (*TAIR) AT5G44120.3 (e_value=7e-84) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=1e-155) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00048244g0004.1 protein AED:0.35 eAED:0.36 QI:214|1|0.88|1|0.62|0.55|9|0|256; (*GB) gi|359485436|ref|XP_002280009.2| (e_value=1e-121) PREDICTED: uncharacterized protein LOC100245387 [Vitis vinifera];; (*SWP) sp|Q9CR95|NECP1_MOUSE (e_value=4e-38) Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2;; (*TAIR) AT3G58600.1 (e_value=2e-104) | Symbols: | Adaptin ear-binding coat-associated protein 1 NECAP-1 | chr3:21668746-21670999 REVERSE LENGTH=302;; (*ITAG) Solyc07g053310.2.1 (e_value=5e-157) genomic_reference:SL2.40ch07 gene_region:59102795-59108445 transcript_region:SL2.40ch07:59102795..59108445+ go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 1 (AHRD V1 **** B4FRD1_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00019148g0004.1 protein AED:0.33 eAED:0.74 QI:69|0|0.5|1|0|0.5|2|205|85; (*ITAG) Solyc05g008350.2.1 (e_value=2e-22) genomic_reference:SL2.40ch05 gene_region:2707862-2717543 transcript_region:SL2.40ch05:2707862..2717543+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 7 (AHRD V1 **** AB7G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00019148g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|262; (*GB) gi|297746207|emb|CBI16263.3| (e_value=7e-137) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=8e-124) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1;; (*TAIR) AT1G71100.1 (e_value=5e-127) | Symbols: RSW10 | Ribose 5-phosphate isomerase, type A protein | chr1:26814726-26815529 FORWARD LENGTH=267;; (*ITAG) Solyc05g008370.1.1 (e_value=1e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2732607-2733413 transcript_region:SL2.40ch05:2732607..2733413+ go_terms:GO:0004751 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 **** A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0004751 NbS00019148g0010.1 protein AED:0.14 eAED:0.14 QI:320|0.83|1|1|0.66|0.85|7|248|531; (*GB) gi|224108357|ref|XP_002314819.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71110.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818244-26820852 FORWARD LENGTH=557;; (*ITAG) Solyc05g008380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2746509-2753310 transcript_region:SL2.40ch05:2746509..2753310+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017074g0008.1 protein AED:0.09 eAED:0.09 QI:175|0.5|0.66|1|0.5|0.33|3|0|471; (*GB) gi|356505620|ref|XP_003521588.1| (e_value=3e-125) PREDICTED: uncharacterized protein LOC100800231 [Glycine max];; (*TAIR) AT2G47440.1 (e_value=9e-120) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:19469912-19471660 FORWARD LENGTH=526;; (*ITAG) Solyc06g009670.2.1 (e_value=5e-158) genomic_reference:SL2.40ch06 gene_region:3613117-3615972 transcript_region:SL2.40ch06:3613117..3615972- go_terms:GO:0005488,GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7M452_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0031072 NbS00017074g0009.1 protein AED:0.31 eAED:0.33 QI:0|0.5|0.33|1|0|0.66|3|0|169; (*GB) gi|1616612|emb|CAA69699.1| (e_value=9e-78) small GTP-binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=3e-75) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=3e-76) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc06g009660.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:3608115-3612636 transcript_region:SL2.40ch06:3608115..3612636+ go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00034302g0003.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|0.5|0.66|3|0|109; (*GB) gi|359481749|ref|XP_003632669.1| (e_value=7e-16) PREDICTED: L-type lectin-domain containing receptor kinase IV.2-like [Vitis vinifera];; (*ITAG) Solyc09g011070.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4400701-4402746 transcript_region:SL2.40ch09:4400701..4402746- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00044198g0003.1 protein AED:0.24 eAED:0.25 QI:0|0|0|0.8|0|0.4|5|0|187; (*GB) gi|359359232|gb|AEV41134.1| (e_value=2e-65) D2/4-type cyclin [Populus x canadensis];; (*SWP) sp|Q6YXH8|CCD41_ORYSJ (e_value=5e-51) Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2;; (*TAIR) AT2G22490.1 (e_value=2e-49) | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873 REVERSE LENGTH=361;; (*ITAG) Solyc04g076040.2.1 (e_value=3e-71) genomic_reference:SL2.40ch04 gene_region:58597640-58599964 transcript_region:SL2.40ch04:58597640..58599964- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin d2 (AHRD V1 **** Q6T2Z7_SOYBN); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00041753g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|119 NbS00041753g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.66|1|4|0|353; (*GB) gi|242046208|ref|XP_002460975.1| (e_value=2e-72) hypothetical protein SORBIDRAFT_02g038650 [Sorghum bicolor];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=2e-39) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT1G26360.1 (e_value=1e-52) | Symbols: ATMES13, MES13 | methyl esterase 13 | chr1:9119021-9121203 REVERSE LENGTH=444;; (*ITAG) Solyc05g012180.2.1 (e_value=5e-87) genomic_reference:SL2.40ch05 gene_region:5446238-5449535 transcript_region:SL2.40ch05:5446238..5449535- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00006361g0008.1 protein AED:0.03 eAED:0.03 QI:280|1|1|1|0.87|0.66|9|0|395; (*GB) gi|225452692|ref|XP_002282330.1| (e_value=0.0) PREDICTED: protein CLP1 homolog [Vitis vinifera];; (*SWP) sp|Q5ZJL4|CLP1_CHICK (e_value=2e-103) Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gallus gallus GN=CLP1 PE=2 SV=1;; (*TAIR) AT3G04680.2 (e_value=0.0) | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1270053-1272415 REVERSE LENGTH=444;; (*ITAG) Solyc01g009290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3323813-3335853 transcript_region:SL2.40ch01:3323813..3335853- go_terms:GO:0005515,GO:0051736 functional_description:"Polyribonucleotide 5'-hydroxyl-kinase Clp1 (AHRD V1 **** CLP1_CHICK); contains Interpro domain(s) IPR010655 Pre-mRNA cleavage complex II Clp1 "; GO:0005515,GO:0051736 NbS00006361g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.9|0.90|1|0.95|0.95|21|381|961; (*GB) gi|365222948|gb|AEW69826.1| (e_value=0.0) Hop-interacting protein THI140 [Solanum lycopersicum];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc01g009280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3302809-3320461 transcript_region:SL2.40ch01:3302809..3320461- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** D7LGU6_ARALY); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00041117g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|801; (*GB) gi|224075052|ref|XP_002304537.1| (e_value=0.0) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=0.0) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.1 (e_value=0.0) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16641146 REVERSE LENGTH=810;; (*ITAG) Solyc08g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61916642-61920862 transcript_region:SL2.40ch08:61916642..61920862- go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00041117g0001.1 protein AED:0.15 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|435; (*GB) gi|225463679|ref|XP_002276066.1| (e_value=0.0) PREDICTED: transmembrane protein 53 [Vitis vinifera];; (*TAIR) AT3G19970.1 (e_value=2e-168) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:6959644-6961367 FORWARD LENGTH=434;; (*ITAG) Solyc02g020890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:10982791-10987429 transcript_region:SL2.40ch02:10982791..10987429+ functional_description:"Transmembrane protein 53 (AHRD V1 *--- B5X6E4_SALSA); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00008639g0004.1 protein AED:0.04 eAED:0.04 QI:58|1|0.8|1|1|1|5|0|230; (*GB) gi|225433444|ref|XP_002283374.1| (e_value=3e-49) PREDICTED: uncharacterized protein LOC100266687 [Vitis vinifera];; (*TAIR) AT4G13690.1 (e_value=1e-25) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:7953662-7955380 REVERSE LENGTH=249;; (*ITAG) Solyc00g097960.1.1 (e_value=1e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15669311-15671328 transcript_region:SL2.40ch00:15669311..15671328+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008639g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.71|0.53|1|0.92|0.86|15|0|992; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc12g100180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65339306-65345848 transcript_region:SL2.40ch12:65339306..65345848+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00008639g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|69 NbS00008639g0018.1 protein AED:0.25 eAED:0.31 QI:0|0|0|1|0|0.33|3|0|316; (*GB) gi|47824946|gb|AAT38720.1| (e_value=5e-55) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=1e-23) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=9e-25) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g091710.1.1 (e_value=6e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00008639g0005.1 protein AED:0.37 eAED:0.53 QI:0|0|0|0.66|1|1|3|0|226 NbS00011899g0008.1 protein AED:0.06 eAED:0.06 QI:1351|0.71|0.75|1|0.71|0.62|8|0|535; (*GB) gi|359473569|ref|XP_002265426.2| (e_value=2e-156) PREDICTED: uncharacterized protein LOC100254476 [Vitis vinifera];; (*TAIR) AT3G01810.2 (e_value=1e-117) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink). | chr3:289218-292375 FORWARD LENGTH=859;; (*ITAG) Solyc05g015050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9762176-9768847 transcript_region:SL2.40ch05:9762176..9768847+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00007873g0008.1 protein AED:0.35 eAED:0.35 QI:370|0.62|0.66|1|0.5|0.55|9|0|371; (*GB) gi|4512263|dbj|BAA75232.1| (e_value=1e-160) H+/Ca2+ exchanger 2 [Ipomoea nil];; (*SWP) sp|Q5KQN0|CAX2_ORYSJ (e_value=6e-157) Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2;; (*TAIR) AT1G55730.2 (e_value=6e-135) | Symbols: ATCAX5, CAX5 | cation exchanger 5 | chr1:20831387-20833941 REVERSE LENGTH=441;; (*ITAG) Solyc12g055750.1.1 (e_value=7e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47093237-47100681 transcript_region:SL2.40ch12:47093237..47100681- go_terms:GO:0055085,GO:0016021 functional_description:"Vacuolar cation/proton exchanger 2 (AHRD V1 ***- B6UEI1_MAIZE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0055085,GO:0016021 NbS00007873g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|228 NbS00025407g0003.1 protein AED:0.05 eAED:0.05 QI:172|1|0.83|1|1|1|6|372|174; (*GB) gi|14594925|emb|CAC43323.1| (e_value=3e-122) putative alpha7 proteasome subunit [Nicotiana tabacum];; (*SWP) sp|O24362|PSA3_SPIOL (e_value=7e-121) Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1;; (*TAIR) AT2G27020.1 (e_value=1e-120) | Symbols: PAG1 | 20S proteasome alpha subunit G1 | chr2:11528515-11530858 REVERSE LENGTH=249;; (*ITAG) Solyc10g077030.1.1 (e_value=6e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59270503-59275704 transcript_region:SL2.40ch10:59270503..59275704- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q93X34_TOBAC); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00012890g0001.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|545; (*GB) gi|225440338|ref|XP_002270073.1| (e_value=0.0) PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis vinifera];; (*SWP) sp|Q9LD90|CBF5_ARATH (e_value=0.0) H/ACA ribonucleoprotein complex subunit 4 OS=Arabidopsis thaliana GN=CBF5 PE=1 SV=1;; (*TAIR) AT3G57150.1 (e_value=0.0) | Symbols: NAP57, AtNAP57, CBF5, AtCBF5 | homologue of NAP57 | chr3:21154255-21155952 REVERSE LENGTH=565;; (*ITAG) Solyc02g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40195019-40197284 transcript_region:SL2.40ch02:40195019..40197284+ go_terms:GO:0019904 functional_description:"tRNA pseudouridine synthase B (AHRD V1 *-*- TRUB_PELTS); contains Interpro domain(s) IPR004802 Pseudouridine synthase, putative "; GO:0019904 NbS00012890g0002.1 protein AED:0.09 eAED:0.09 QI:247|1|1|1|0.66|0.5|4|527|256; (*GB) gi|225423595|ref|XP_002273965.1| (e_value=4e-161) PREDICTED: haloacid dehalogenase-like hydrolase domain-containing-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q7T012|HDHD3_DANRE (e_value=2e-31) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Danio rerio GN=hdhd3 PE=2 SV=1;; (*TAIR) AT5G44730.1 (e_value=6e-151) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18045588-18046519 REVERSE LENGTH=255;; (*ITAG) Solyc02g081830.2.1 (e_value=2e-179) genomic_reference:SL2.40ch02 gene_region:40202098-40203440 transcript_region:SL2.40ch02:40202098..40203440- go_terms:GO:0005515 functional_description:"HAD-superfamily hydrolase (AHRD V1 ***- D5A3P4_SPIPL); contains Interpro domain(s) IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like "; GO:0005515 NbS00026059g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|297788408|ref|XP_002862313.1| (e_value=7e-21) hypothetical protein ARALYDRAFT_497523 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G42870.1 (e_value=2e-23) | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | chr2:17836831-17837187 REVERSE LENGTH=118;; (*ITAG) Solyc07g056360.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61560598-61560912 transcript_region:SL2.40ch07:61560598..61560912+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026059g0009.1 protein AED:0.22 eAED:0.22 QI:12|0.9|0.81|1|0.5|0.45|11|281|615; (*GB) gi|350539497|ref|NP_001234664.1| (e_value=0.0) mitogen-activated protein kinase 12 [Solanum lycopersicum];; (*SWP) sp|Q5ZCI1|MPK10_ORYSJ (e_value=0.0) Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica GN=MPK10 PE=2 SV=2;; (*TAIR) AT2G42880.1 (e_value=0.0) | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606;; (*ITAG) Solyc07g056350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61549395-61555184 transcript_region:SL2.40ch07:61549395..61555184+ go_terms:GO:0008339 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 **** B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008339 NbS00032513g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|0.85|0.87|8|0|821; (*GB) gi|225461482|ref|XP_002282528.1| (e_value=0.0) PREDICTED: dynamin-like protein C-like [Vitis vinifera];; (*SWP) sp|F4HPR5|DRP5A_ARATH (e_value=0.0) Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1;; (*TAIR) AT1G53140.1 (e_value=0.0) | Symbols: DRP5A | Dynamin related protein 5A | chr1:19799271-19802441 FORWARD LENGTH=817;; (*ITAG) Solyc07g063080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62881275-62885932 transcript_region:SL2.40ch07:62881275..62885932- go_terms:GO:0005525 functional_description:"Dynamin family protein (AHRD V1 ***- D7KKE2_ARALY); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00040913g0001.1 protein AED:0.43 eAED:0.57 QI:0|0.33|0.5|1|0|0|4|132|69; (*GB) gi|351726050|ref|NP_001238393.1| (e_value=4e-15) peroxisomal 3-hydroxyisobutyryl-coenzyme A hydrolase [Glycine max];; (*SWP) sp|Q6NMB0|HIBC3_ARATH (e_value=2e-15) Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1;; (*TAIR) AT2G30660.1 (e_value=2e-16) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr2:13058500-13061665 REVERSE LENGTH=378;; (*ITAG) Solyc01g108800.2.1 (e_value=6e-17) genomic_reference:SL2.40ch01 gene_region:87741775-87749641 transcript_region:SL2.40ch01:87741775..87749641+ go_terms:GO:0003860 functional_description:"3-hydroxyisobutyryl-CoA hydrolase (AHRD V1 **** D3NUG5_AZOS1); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0003860 NbS00010261g0005.1 protein AED:0.04 eAED:0.04 QI:105|1|1|1|1|1|3|311|138; (*GB) gi|225424879|ref|XP_002274663.1| (e_value=4e-43) PREDICTED: thioredoxin H2 [Vitis vinifera];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=6e-36) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=4e-37) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc04g005810.2.1 (e_value=6e-66) genomic_reference:SL2.40ch04 gene_region:523131-523878 transcript_region:SL2.40ch04:523131..523878+ go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00010261g0006.1 protein AED:0.26 eAED:0.26 QI:297|1|1|1|1|1|2|386|309; (*GB) gi|34811736|gb|AAQ82701.1| (e_value=0.0) potyviral capsid protein interacting protein 1 [Nicotiana tabacum];; (*SWP) sp|Q9UDY4|DNJB4_HUMAN (e_value=5e-80) DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1;; (*TAIR) AT1G10350.1 (e_value=7e-135) | Symbols: | DNAJ heat shock family protein | chr1:3393595-3394860 REVERSE LENGTH=349;; (*ITAG) Solyc04g005820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:524032-528627 transcript_region:SL2.40ch04:524032..528627- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00024372g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.66|1|0.62|0.55|9|0|525; (*GB) gi|5734587|emb|CAB52797.1| (e_value=0.0) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=4e-88) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT4G28220.1 (e_value=0.0) | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13993078-13995651 FORWARD LENGTH=571;; (*ITAG) Solyc07g054640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60229606-60234942 transcript_region:SL2.40ch07:60229606..60234942+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00007886g0008.1 protein AED:0.15 eAED:0.15 QI:223|1|1|1|1|1|4|313|242; (*GB) gi|356521239|ref|XP_003529264.1| (e_value=2e-128) PREDICTED: putative glutamine amidotransferase YLR126C-like [Glycine max];; (*SWP) sp|Q12288|YL126_YEAST (e_value=3e-23) Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1;; (*TAIR) AT2G23970.1 (e_value=2e-93) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251;; (*ITAG) Solyc01g106060.2.1 (e_value=8e-169) genomic_reference:SL2.40ch01 gene_region:85803328-85806666 transcript_region:SL2.40ch01:85803328..85806666- go_terms:GO:0003824 functional_description:"Glutamine amidotransferase class-I (AHRD V1 **-- A2Q1P2_MEDTR); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0003824 NbC26067334g0003.1 protein AED:0.00 eAED:0.00 QI:36|1|0.5|1|1|1|2|0|282; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=2e-86) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=2e-57) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=1e-62) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00030224g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|359485884|ref|XP_002270768.2| (e_value=1e-91) PREDICTED: probable serine/threonine-protein kinase WNK11-like [Vitis vinifera];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=7e-84) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=5e-85) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc07g047990.1.1 (e_value=3e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56521372-56522845 transcript_region:SL2.40ch07:56521372..56522845+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00048543g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|139; (*GB) gi|225450869|ref|XP_002284212.1| (e_value=4e-69) PREDICTED: germin-like protein subfamily 1 member 13-like [Vitis vinifera];; (*SWP) sp|P92996|GL120_ARATH (e_value=1e-60) Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1;; (*TAIR) AT5G39190.1 (e_value=8e-62) | Symbols: GLP2A, ATGER2, GER2 | germin-like protein 2 | chr5:15692771-15693546 REVERSE LENGTH=222;; (*ITAG) Solyc01g102900.2.1 (e_value=9e-81) genomic_reference:SL2.40ch01 gene_region:83330448-83331550 transcript_region:SL2.40ch01:83330448..83331550- go_terms:GO:0050162 functional_description:"Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00048543g0006.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.33|1|1|1|3|0|274; (*GB) gi|147852242|emb|CAN80134.1| (e_value=5e-106) hypothetical protein VITISV_012033 [Vitis vinifera];; (*SWP) sp|Q9FID0|GL114_ARATH (e_value=3e-92) Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1;; (*TAIR) AT5G39110.1 (e_value=2e-93) | Symbols: | RmlC-like cupins superfamily protein | chr5:15657802-15658584 REVERSE LENGTH=222;; (*ITAG) Solyc01g102900.2.1 (e_value=2e-143) genomic_reference:SL2.40ch01 gene_region:83330448-83331550 transcript_region:SL2.40ch01:83330448..83331550- go_terms:GO:0050162 functional_description:"Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00059505g0002.1 protein AED:0.25 eAED:0.27 QI:0|0|0.33|1|1|1|3|333|122 NbS00033398g0004.1 protein AED:0.31 eAED:0.31 QI:229|0.8|1|1|0.6|0.72|11|253|324; (*GB) gi|255543829|ref|XP_002512977.1| (e_value=1e-142) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=5e-136) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.1 (e_value=3e-137) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=559;; (*ITAG) Solyc01g110280.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:88754913-88761700 transcript_region:SL2.40ch01:88754913..88761700- go_terms:GO:0016020 functional_description:"DNA-damage-inducible protein F (AHRD V1 **-- B4V9L8_9ACTO); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00059247g0003.1 protein AED:0.32 eAED:0.32 QI:296|0.5|0.66|1|0|0|3|324|228; (*GB) gi|147792152|emb|CAN64141.1| (e_value=2e-71) hypothetical protein VITISV_012859 [Vitis vinifera];; (*TAIR) AT4G32480.1 (e_value=2e-42) | Symbols: | Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287;; (*ITAG) Solyc11g042630.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:32780452-32785147 transcript_region:SL2.40ch11:32780452..32785147- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00008067g0110.1 protein AED:0.25 eAED:0.25 QI:124|0.69|0.64|0.92|0.84|0.78|14|0|476 NbS00008067g0107.1 protein AED:0.12 eAED:0.12 QI:469|1|1|1|0.33|0.57|7|0|375 NbS00008745g0001.1 protein AED:0.17 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|111 NbS00008745g0005.1 protein AED:0.34 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|106 NbS00008745g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|135 NbS00044519g0015.1 protein AED:0.11 eAED:0.11 QI:205|1|0.90|1|1|1|11|0|473; (*GB) gi|359496948|ref|XP_003635380.1| (e_value=0.0) PREDICTED: cytosolic Fe-S cluster assembly factor NARFL-like [Vitis vinifera];; (*SWP) sp|Q9H6Q4|NARFL_HUMAN (e_value=2e-141) Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1;; (*TAIR) AT4G16440.1 (e_value=0.0) | Symbols: | ferredoxin hydrogenases | chr4:9269263-9271510 REVERSE LENGTH=474;; (*ITAG) Solyc08g065990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51647637-51653346 transcript_region:SL2.40ch08:51647637..51653346+ go_terms:GO:0008901,GO:0005521 functional_description:"Cytosolic Fe-S cluster assembly factor NAR1 (AHRD V1 ***- NAR1_YARLI); contains Interpro domain(s) IPR009016 Iron hydrogenase "; GO:0008901,GO:0005521 NbS00044519g0018.1 protein AED:0.14 eAED:0.14 QI:198|0.78|0.75|1|0.63|0.65|20|79|1943; (*GB) gi|296081595|emb|CBI20600.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G32820.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15831679-15841454 REVERSE LENGTH=1863;; (*ITAG) Solyc08g066010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51662840-51674313 transcript_region:SL2.40ch08:51662840..51674313- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7M9N9_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00048558g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|0|0|3|0|151; (*ITAG) Solyc00g125580.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:16625580-16626763 transcript_region:SL2.40ch00:16625580..16626763- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00027424g0008.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|224134360|ref|XP_002321800.1| (e_value=1e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15570.1 (e_value=1e-15) | Symbols: | Bromodomain transcription factor | chr5:5066851-5067996 FORWARD LENGTH=381;; (*ITAG) Solyc02g069170.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33691587-33692429 transcript_region:SL2.40ch02:33691587..33692429- functional_description:"Os12g0574800 protein (Fragment) (AHRD V1 *-*- Q0IME3_ORYSJ); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; NbS00027424g0006.1 protein AED:0.42 eAED:0.69 QI:0|0|0|0.66|1|1|3|0|190 NbS00027424g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0.33|1|0|0|3|456|1094; (*GB) gi|225460189|ref|XP_002277079.1| (e_value=0.0) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q9P2J5|SYLC_HUMAN (e_value=0.0) Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2;; (*TAIR) AT1G09620.1 (e_value=0.0) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00027424g0001.1 protein AED:0.03 eAED:0.03 QI:858|0|0.5|1|0|0.5|2|369|85 NbS00027826g0003.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|4|0|425; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=4e-111) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=2e-87) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT1G64940.1 (e_value=4e-93) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc03g096990.2.1 (e_value=3e-136) genomic_reference:SL2.40ch03 gene_region:52800830-52805612 transcript_region:SL2.40ch03:52800830..52805612+ go_terms:GO:0019825 functional_description:"Cytochrome P450 89A2 (AHRD V1 ***- C89A2_ARATH); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbC25591020g0001.1 protein AED:0.40 eAED:0.87 QI:0|0|0|1|1|1|4|0|99; (*GB) gi|147766810|emb|CAN67532.1| (e_value=1e-18) hypothetical protein VITISV_019583 [Vitis vinifera];; (*ITAG) Solyc03g059180.2.1 (e_value=2e-19) genomic_reference:SL2.40ch03 gene_region:25233405-25241771 transcript_region:SL2.40ch03:25233405..25241771- functional_description:"Extracellular calcium sensing receptor (AHRD V1 *-*- C7BCU7_LIQFO); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00047965g0008.1 protein AED:0.32 eAED:0.32 QI:259|0.71|0.75|1|0.71|0.87|8|459|340; (*GB) gi|297823815|ref|XP_002879790.1| (e_value=9e-71) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q1RKM3|PGSA_RICBR (e_value=4e-20) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Rickettsia bellii (strain RML369-C) GN=pgsA PE=3 SV=1;; (*TAIR) AT2G39290.1 (e_value=2e-73) | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate synthase 1 | chr2:16407274-16408840 FORWARD LENGTH=296;; (*ITAG) Solyc04g049550.2.1 (e_value=2e-117) genomic_reference:SL2.40ch04 gene_region:41657945-41671566 transcript_region:SL2.40ch04:41657945..41671566- go_terms:GO:0008444 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-** PGSA_YERE8); contains Interpro domain(s) IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase "; GO:0008444 NbS00047965g0007.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.25|1|1|4|0|161 NbS00027974g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|663; (*GB) gi|350538507|ref|NP_001234858.1| (e_value=0.0) EIN3-binding F-box protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=0.0) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1;; (*TAIR) AT2G25490.1 (e_value=0.0) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628;; (*ITAG) Solyc12g009560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2815885-2818657 transcript_region:SL2.40ch12:2815885..2818657+ functional_description:"F-box/LRR-repeat protein (AHRD V1 *-*- C0S347_PARBP); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027974g0006.1 protein AED:0.11 eAED:0.11 QI:60|1|0.5|1|1|1|4|0|94; (*GB) gi|350535735|ref|NP_001234210.1| (e_value=2e-49) calcineurin B-like interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q9LDI3|CIPKO_ARATH (e_value=1e-33) CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1;; (*TAIR) AT5G35410.1 (e_value=8e-35) | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein kinase superfamily protein | chr5:13634933-13638062 FORWARD LENGTH=446;; (*ITAG) Solyc12g009570.1.1 (e_value=4e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2827273-2833740 transcript_region:SL2.40ch12:2827273..2833740- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 09 (AHRD V1 ***- A5BZV3_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00057507g0006.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|358; (*GB) gi|255537577|ref|XP_002509855.1| (e_value=1e-120) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G63930.1 (e_value=2e-101) | Symbols: ROH1 | from the Czech 'roh' meaning 'corner' | chr1:23727927-23729174 FORWARD LENGTH=415;; (*ITAG) Solyc08g081520.1.1 (e_value=2e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61719986-61721203 transcript_region:SL2.40ch08:61719986..61721203+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00057507g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|192383221|gb|ACF04633.1| (e_value=3e-42) exocyst subunit Exo70-interacting protein Roh1 [Nicotiana tabacum];; (*TAIR) AT1G63930.1 (e_value=2e-25) | Symbols: ROH1 | from the Czech 'roh' meaning 'corner' | chr1:23727927-23729174 FORWARD LENGTH=415;; (*ITAG) Solyc08g081520.1.1 (e_value=8e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61719986-61721203 transcript_region:SL2.40ch08:61719986..61721203+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00028559g0010.1 protein AED:0.13 eAED:0.14 QI:0|1|1|1|1|0.8|5|1013|446; (*GB) gi|225429894|ref|XP_002283626.1| (e_value=2e-170) PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Vitis vinifera];; (*SWP) sp|Q6MEG4|RSMH_PARUW (e_value=5e-69) Ribosomal RNA small subunit methyltransferase H OS=Protochlamydia amoebophila (strain UWE25) GN=rsmH PE=3 SV=1;; (*TAIR) AT5G10910.1 (e_value=3e-142) | Symbols: | mraW methylase family protein | chr5:3439588-3441517 FORWARD LENGTH=434;; (*ITAG) Solyc11g005580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:432322-435675 transcript_region:SL2.40ch11:432322..435675+ go_terms:GO:0031177,GO:0008168 functional_description:"Ribosomal RNA small subunit methyltransferase H (AHRD V1 ***- D6YUB3_WADCW); contains Interpro domain(s) IPR002903 Bacterial methyltransferase "; GO:0031177,GO:0008168 NbS00028559g0011.1 protein AED:0.38 eAED:0.38 QI:172|1|1|1|0.75|0.4|5|0|162; (*GB) gi|225435882|ref|XP_002264937.1| (e_value=2e-44) PREDICTED: uncharacterized protein LOC100249562 isoform 1 [Vitis vinifera];; (*TAIR) AT2G44820.1 (e_value=3e-35) | Symbols: | unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:18484690-18485517 FORWARD LENGTH=194;; (*ITAG) Solyc11g005570.1.1 (e_value=6e-67) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:428160-431554 transcript_region:SL2.40ch11:428160..431554+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00032475g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.62|0.55|1|1|1|9|219|663; (*GB) gi|224060963|ref|XP_002300297.1| (e_value=2e-103) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17000.1 (e_value=2e-77) | Symbols: | unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). | chr4:9567046-9569913 REVERSE LENGTH=674;; (*ITAG) Solyc01g106540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86140439-86143977 transcript_region:SL2.40ch01:86140439..86143977- functional_description:"Unknown Protein (AHRD V1)"; NbS00032475g0008.1 protein AED:0.09 eAED:0.10 QI:0|1|0.62|1|1|1|8|0|366; (*GB) gi|350536711|ref|NP_001234005.1| (e_value=0.0) glyoxisomal malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|P19446|MDHG_CITLA (e_value=0.0) Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT2G22780.1 (e_value=0.0) | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase 1 | chr2:9689995-9691923 REVERSE LENGTH=354;; (*ITAG) Solyc01g106480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86121621-86124841 transcript_region:SL2.40ch01:86121621..86124841- go_terms:GO:0008152,GO:0005975,GO:0055114 functional_description:"Malate dehydrogenase (AHRD V1 ***- A5BEJ8_VITVI); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0008152,GO:0005975,GO:0055114 NbS00032475g0020.1 protein AED:0.18 eAED:0.21 QI:579|1|0.9|1|1|1|10|277|455; (*GB) gi|359475517|ref|XP_002272975.2| (e_value=0.0) PREDICTED: DUF21 domain-containing protein At2g14520-like [Vitis vinifera];; (*SWP) sp|Q9ZQR4|Y2452_ARATH (e_value=0.0) DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2;; (*TAIR) AT2G14520.1 (e_value=0.0) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr2:6182362-6184648 REVERSE LENGTH=423;; (*ITAG) Solyc01g106570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86153651-86159586 transcript_region:SL2.40ch01:86153651..86159586- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_BUCAP); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00032475g0027.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0.5|0.66|3|0|303; (*GB) gi|356524175|ref|XP_003530707.1| (e_value=4e-101) PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max];; (*SWP) sp|P0CM97|CWC22_CRYNB (e_value=1e-61) Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC22 PE=3 SV=1;; (*TAIR) AT1G80930.1 (e_value=2e-93) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc08g005190.2.1 (e_value=6e-109) genomic_reference:SL2.40ch08 gene_region:124884-130281 transcript_region:SL2.40ch08:124884..130281+ go_terms:GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 *-*- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0003723 NbS00032475g0029.1 protein AED:0.39 eAED:0.53 QI:0|0|0|1|1|1|2|0|129; (*GB) gi|297839843|ref|XP_002887803.1| (e_value=5e-55) hypothetical protein ARALYDRAFT_895889 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q08C72|CWC22_DANRE (e_value=2e-37) Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1;; (*TAIR) AT1G80930.1 (e_value=2e-57) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc08g005190.2.1 (e_value=3e-56) genomic_reference:SL2.40ch08 gene_region:124884-130281 transcript_region:SL2.40ch08:124884..130281+ go_terms:GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 *-*- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0003723 NbS00032475g0007.1 protein AED:0.00 eAED:0.00 QI:317|1|1|1|0|0|3|243|175; (*GB) gi|224054544|ref|XP_002298313.1| (e_value=9e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=1e-16) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G34440.1 (e_value=3e-20) | Symbols: AGL29 | AGAMOUS-like 29 | chr2:14526950-14527468 FORWARD LENGTH=172;; (*ITAG) Solyc03g119680.1.1 (e_value=4e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62286625-62287158 transcript_region:SL2.40ch03:62286625..62287158+ go_terms:GO:0005634 functional_description:"MADS-box protein-like (AHRD V1 *-*- Q6YTZ9_ORYSJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00032475g0033.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|378|990; (*GB) gi|224105823|ref|XP_002313944.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=0.0) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G09970.1 (e_value=0.0) | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like protein kinase family protein | chr1:3252408-3255428 FORWARD LENGTH=976;; (*ITAG) Solyc01g106500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86131135-86133728 transcript_region:SL2.40ch01:86131135..86133728+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00032475g0009.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|297736347|emb|CBI25070.3| (e_value=1e-130) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64510.1 (e_value=9e-116) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=9e-165) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00032475g0032.1 protein AED:0.31 eAED:0.31 QI:71|0.75|0.6|1|0.5|0.2|5|0|247; (*GB) gi|297736362|emb|CBI25085.3| (e_value=4e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G33690.1 (e_value=4e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | chr4:16175198-16176137 FORWARD LENGTH=246;; (*ITAG) Solyc01g106560.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:86146665-86150324 transcript_region:SL2.40ch01:86146665..86150324+ functional_description:"AT4g33690/T16L1_180 (Fragment) (AHRD V1 *-*- Q94AD3_ARATH)"; NbS00032475g0030.1 protein AED:0.17 eAED:0.44 QI:0|0|0|1|0|0|4|0|265; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=5e-29) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106510.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:86134498-86135961 transcript_region:SL2.40ch01:86134498..86135961- functional_description:"F-box protein family-like (AHRD V1 ***- Q6ZCS3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00002410g0025.1 protein AED:0.01 eAED:0.01 QI:216|1|1|1|1|1|2|456|212; (*GB) gi|299891471|gb|ADJ57588.1| (e_value=2e-91) mitochondrial small heat shock protein [Capsicum annuum];; (*SWP) sp|P11890|HS23C_CHERU (e_value=3e-58) Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1;; (*TAIR) AT5G51440.1 (e_value=2e-53) | Symbols: | HSP20-like chaperones superfamily protein | chr5:20891242-20892013 FORWARD LENGTH=210;; (*ITAG) Solyc08g078700.2.1 (e_value=1e-91) genomic_reference:SL2.40ch08 gene_region:59635844-59637072 transcript_region:SL2.40ch08:59635844..59637072+ functional_description:"Heat shock protein 22 (AHRD V1 ***- Q27JQ0_METAN); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00002410g0011.1 protein AED:0.04 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|200; (*GB) gi|356555208|ref|XP_003545927.1| (e_value=5e-56) PREDICTED: putative Peroxidase 48-like [Glycine max];; (*SWP) sp|O81755|PER48_ARATH (e_value=8e-27) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT2G38390.1 (e_value=7e-28) | Symbols: | Peroxidase superfamily protein | chr2:16079726-16081381 FORWARD LENGTH=349;; (*ITAG) Solyc02g085930.2.1 (e_value=3e-84) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00002410g0031.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|676; (*GB) gi|224071537|ref|XP_002303507.1| (e_value=8e-151) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47580.1 (e_value=3e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19294948-19297194 REVERSE LENGTH=748;; (*ITAG) Solyc08g078780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59666621-59670212 transcript_region:SL2.40ch08:59666621..59670212+ functional_description:"AT5g47580/MNJ7_17 (AHRD V1 ***- Q9FGJ9_ARATH)"; NbS00002410g0026.1 protein AED:0.24 eAED:0.24 QI:129|1|1|1|1|1|2|233|168; (*TAIR) AT5G47600.1 (e_value=1e-13) | Symbols: | HSP20-like chaperones superfamily protein | chr5:19299945-19300456 REVERSE LENGTH=131;; (*ITAG) Solyc08g078720.2.1 (e_value=5e-90) genomic_reference:SL2.40ch08 gene_region:59641339-59642959 transcript_region:SL2.40ch08:59641339..59642959+ functional_description:"Heat shock protein (AHRD V1 *-*- O64960_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00002410g0027.1 protein AED:0.01 eAED:0.01 QI:217|0.5|0.66|1|0|0|3|39|107; (*GB) gi|356563320|ref|XP_003549912.1| (e_value=1e-15) PREDICTED: uncharacterized protein LOC100804630 [Glycine max];; (*TAIR) AT2G35730.1 (e_value=2e-15) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr2:15020559-15021475 REVERSE LENGTH=115;; (*ITAG) Solyc08g078730.2.1 (e_value=5e-56) genomic_reference:SL2.40ch08 gene_region:59643244-59645089 transcript_region:SL2.40ch08:59643244..59645089- functional_description:"Unknown Protein (AHRD V1)"; NbS00002410g0028.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.57|0.6|15|424|455; (*GB) gi|297741186|emb|CBI31917.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66HG7|DDX59_RAT (e_value=9e-15) Probable ATP-dependent RNA helicase DDX59 OS=Rattus norvegicus GN=Ddx59 PE=2 SV=1;; (*TAIR) AT3G02065.3 (e_value=6e-12) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:359136-360734 FORWARD LENGTH=505;; (*ITAG) Solyc08g078750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59649917-59658463 transcript_region:SL2.40ch08:59649917..59658463- go_terms:GO:0008270 functional_description:"DEAD-box ATP-dependent RNA helicase 41 (AHRD V1 *-*- RH41_ORYSJ); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; GO:0008270 NbS00002410g0021.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|252; (*GB) gi|255576082|ref|XP_002528936.1| (e_value=5e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16530.1 (e_value=8e-26) | Symbols: | Family of unknown function (DUF577) | chr4:9311355-9315554 FORWARD LENGTH=803;; (*ITAG) Solyc08g078740.1.1 (e_value=2e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59648497-59649171 transcript_region:SL2.40ch08:59648497..59649171- functional_description:"Unknown Protein (AHRD V1)"; NbS00006816g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|525; (*GB) gi|9858770|gb|AAG01117.1|AF273333_2 (e_value=2e-130) BAC19.2 [Solanum lycopersicum];; (*SWP) sp|Q9FGY4|FB341_ARATH (e_value=1e-14) F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1;; (*TAIR) AT5G49610.1 (e_value=8e-16) | Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359;; (*ITAG) Solyc01g097610.2.1 (e_value=1e-138) genomic_reference:SL2.40ch01 gene_region:80157372-80158656 transcript_region:SL2.40ch01:80157372..80158656+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00006816g0003.1 protein AED:0.00 eAED:0.00 QI:8|1|1|1|1|1|2|31|76 NbS00001405g0008.1 protein AED:0.20 eAED:0.20 QI:113|0.77|0.7|1|0.77|0.8|10|0|567; (*GB) gi|225429870|ref|XP_002283440.1| (e_value=0.0) PREDICTED: aspartyl-tRNA synthetase, cytoplasmic [Vitis vinifera];; (*SWP) sp|Q922B2|SYDC_MOUSE (e_value=2e-159) Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=2;; (*TAIR) AT4G31180.2 (e_value=0.0) | Symbols: | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558;; (*ITAG) Solyc05g056250.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64748883-64755406 transcript_region:SL2.40ch05:64748883..64755406- go_terms:GO:0004815,GO:0042802 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** SYN_PYRHO); contains Interpro domain(s) IPR004523 Aspartyl-tRNA synthetase, class IIb, archea/euk type "; GO:0004815,GO:0042802 NbS00001405g0007.1 protein AED:0.21 eAED:0.21 QI:104|1|0.85|1|0.66|0.85|7|301|465; (*GB) gi|225430898|ref|XP_002276037.1| (e_value=0.0) PREDICTED: peptide chain release factor 2 [Vitis vinifera];; (*SWP) sp|P74476|RF2_SYNY3 (e_value=3e-128) Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2;; (*TAIR) AT5G36170.1 (e_value=0.0) | Symbols: HCF109, ATPRFB | high chlorophyll fluorescent 109 | chr5:14236083-14237974 REVERSE LENGTH=456;; (*ITAG) Solyc04g025290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:19180778-19194213 transcript_region:SL2.40ch04:19180778..19194213+ go_terms:GO:0005515,GO:0003747 functional_description:"Peptide chain release factor 2 (AHRD V1 **** B6UHD9_MAIZE); contains Interpro domain(s) IPR004374 Peptide chain release factor 2 "; GO:0005515,GO:0003747 NbS00018836g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|255583736|ref|XP_002532621.1| (e_value=2e-60) histone h2b, putative [Ricinus communis];; (*SWP) sp|P40283|H2B11_ARATH (e_value=9e-60) Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5;; (*TAIR) AT5G59910.1 (e_value=7e-61) | Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150;; (*ITAG) Solyc11g007920.1.1 (e_value=1e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2160950-2161384 transcript_region:SL2.40ch11:2160950..2161384- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- A5BCC0_VITVI); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbC26135290g0002.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|0|1|0|94; (*GB) gi|255572168|ref|XP_002527024.1| (e_value=5e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G68220.1 (e_value=7e-38) | Symbols: | Protein of unknown function (DUF1218) | chr1:25570322-25571562 FORWARD LENGTH=201;; (*ITAG) Solyc05g008900.2.1 (e_value=8e-57) genomic_reference:SL2.40ch05 gene_region:3110785-3115464 transcript_region:SL2.40ch05:3110785..3115464- go_terms:GO:0005515 functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY4_DATIN); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; GO:0005515 NbC24938493g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225424029|ref|XP_002283623.1| (e_value=5e-62) PREDICTED: zinc finger protein 6 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=9e-27) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT1G68360.1 (e_value=8e-42) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g009180.1.1 (e_value=1e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3315685-3316332 transcript_region:SL2.40ch05:3315685..3316332- go_terms:GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 ***- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00029570g0007.1 protein AED:0.25 eAED:0.25 QI:350|1|1|1|0.37|0.33|9|649|516; (*GB) gi|225448311|ref|XP_002264923.1| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100257088 [Vitis vinifera];; (*TAIR) AT5G64170.1 (e_value=6e-21) | Symbols: | dentin sialophosphoprotein-related | chr5:25672904-25675445 REVERSE LENGTH=566;; (*ITAG) Solyc01g105120.2.1 (e_value=1e-145) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00029570g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.33|0.66|0.8|0.83|6|376|266; (*GB) gi|356524842|ref|XP_003531037.1| (e_value=9e-54) PREDICTED: uncharacterized protein LOC100780521 [Glycine max];; (*TAIR) AT5G64160.1 (e_value=4e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25670941-25672318 FORWARD LENGTH=227;; (*ITAG) Solyc10g047220.1.1 (e_value=1e-82) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:35685596-35689949 transcript_region:SL2.40ch10:35685596..35689949+ functional_description:"Genomic DNA chromosome 5 P1 clone MHJ24 (AHRD V1 ***- Q9FMI4_ARATH)"; NbC25992544g0004.1 protein AED:0.02 eAED:0.03 QI:4|1|0.83|1|0.6|0.66|6|179|220; (*GB) gi|255540561|ref|XP_002511345.1| (e_value=6e-146) clathrin coat assembly protein ap-1, putative [Ricinus communis];; (*SWP) sp|Q9Y6Q5|AP1M2_HUMAN (e_value=3e-105) AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4;; (*TAIR) AT1G60780.1 (e_value=2e-145) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc06g071650.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40515207-40517639 transcript_region:SL2.40ch06:40515207..40517639- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu (AHRD V1 ***- Q7RVT3_NEUCR); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00025743g0004.1 protein AED:0.20 eAED:0.20 QI:349|0.75|0.66|0.77|0.75|0.88|9|0|337; (*GB) gi|296081385|emb|CBI16818.3| (e_value=5e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13120.1 (e_value=6e-49) | Symbols: | | chr1:4469334-4472775 REVERSE LENGTH=611;; (*ITAG) Solyc05g013790.2.1 (e_value=2e-76) genomic_reference:SL2.40ch05 gene_region:7100783-7110858 transcript_region:SL2.40ch05:7100783..7110858- go_terms:GO:0005643 functional_description:"Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like "; GO:0005643 NbS00040091g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|1|0.8|5|418|353; (*GB) gi|224124340|ref|XP_002319307.1| (e_value=1e-161) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFU1|CAF2M_ARATH (e_value=2e-150) CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1;; (*TAIR) AT5G54890.1 (e_value=1e-151) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr5:22293346-22294909 FORWARD LENGTH=358;; (*ITAG) Solyc07g064490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63838629-63841297 transcript_region:SL2.40ch07:63838629..63841297+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00040091g0010.1 protein AED:0.27 eAED:0.28 QI:0|0.28|0.25|0.87|0.71|0.87|8|0|369; (*GB) gi|358248462|ref|NP_001239630.1| (e_value=4e-147) uncharacterized protein LOC100782338 [Glycine max];; (*SWP) sp|Q9LJU7|PPA18_ARATH (e_value=1e-147) Purple acid phosphatase 18 OS=Arabidopsis thaliana GN=PAP18 PE=2 SV=1;; (*TAIR) AT3G20500.1 (e_value=1e-148) | Symbols: ATPAP18, PAP18 | purple acid phosphatase 18 | chr3:7157926-7160244 FORWARD LENGTH=437;; (*ITAG) Solyc07g064500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63841264-63844461 transcript_region:SL2.40ch07:63841264..63844461- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00056752g0004.1 protein AED:0.05 eAED:0.05 QI:140|1|1|1|1|1|6|313|338; (*GB) gi|224094390|ref|XP_002310152.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15730.1 (e_value=6e-168) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc03g044510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:13523179-13527414 transcript_region:SL2.40ch03:13523179..13527414+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058754g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|408; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=1e-31) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q9LSJ3|FBL48_ARATH (e_value=1e-21) Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2;; (*TAIR) AT3G28410.1 (e_value=1e-22) | Symbols: | F-box/RNI-like superfamily protein | chr3:10640152-10642071 REVERSE LENGTH=465;; (*ITAG) Solyc04g057950.1.1 (e_value=2e-120) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00035710g0010.1 protein AED:0.01 eAED:0.01 QI:98|1|1|1|0|0.5|2|338|92; (*GB) gi|224145162|ref|XP_002325548.1| (e_value=1e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72020.1 (e_value=5e-35) | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27109521-27110327 REVERSE LENGTH=97;; (*ITAG) Solyc06g065180.2.1 (e_value=9e-49) genomic_reference:SL2.40ch06 gene_region:37028954-37032350 transcript_region:SL2.40ch06:37028954..37032350+ functional_description:"SLL1 protein (AHRD V1 ***- A5X2S6_9ERIC)"; NbS00035710g0011.1 protein AED:0.15 eAED:0.15 QI:231|0.75|0.8|1|1|1|5|265|549; (*GB) gi|359493253|ref|XP_002272639.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100233118 [Vitis vinifera];; (*SWP) sp|P48769|DCK_RAT (e_value=2e-38) Deoxycytidine kinase OS=Rattus norvegicus GN=Dck PE=2 SV=1;; (*TAIR) AT1G72040.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27112159-27114248 REVERSE LENGTH=580;; (*ITAG) Solyc11g020780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:11992933-11995728 transcript_region:SL2.40ch11:11992933..11995728- go_terms:GO:0004138 functional_description:"Deoxyguanosine kinase 3 (AHRD V1 *-** Q91XI5_MOUSE); contains Interpro domain(s) IPR002624 Deoxynucleoside kinase "; GO:0004138 NbS00010457g0003.1 protein AED:0.25 eAED:0.32 QI:0|1|0.66|1|1|1|3|0|340; (*GB) gi|224141999|ref|XP_002324348.1| (e_value=6e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3E6P4|FB95_ARATH (e_value=8e-84) F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1;; (*TAIR) AT2G02240.1 (e_value=6e-85) | Symbols: MEE66 | F-box family protein | chr2:592359-593602 REVERSE LENGTH=320;; (*ITAG) Solyc05g055870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64483049-64485380 transcript_region:SL2.40ch05:64483049..64485380- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH)"; GO:0030246 NbS00014552g0001.1 protein AED:0.09 eAED:0.09 QI:124|1|1|1|0|0|5|1047|157; (*GB) gi|359481316|ref|XP_002268100.2| (e_value=1e-64) PREDICTED: transcription factor bHLH61-like [Vitis vinifera];; (*TAIR) AT2G40435.1 (e_value=1e-46) | Symbols: | BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158;; (*ITAG) Solyc09g018500.1.1 (e_value=1e-74) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:15102429-15105804 transcript_region:SL2.40ch09:15102429..15105804+ go_terms:GO:0030528 functional_description:"DNA binding protein (AHRD V1 ***- B4FLH1_MAIZE)"; GO:0030528 NbS00015599g0016.1 protein AED:0.45 eAED:0.63 QI:0|0|0|1|0|0.5|2|0|76; (*ITAG) Solyc11g063490.1.1 (e_value=1e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:46701784-46701960 transcript_region:SL2.40ch11:46701784..46701960- functional_description:"Unknown Protein (AHRD V1)"; NbS00015599g0017.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|1|2|0|115; (*ITAG) Solyc11g063480.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00015599g0013.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|0|0|4|0|335; (*GB) gi|157325530|ref|YP_001468308.1| (e_value=9e-174) photosystem I P700 chlorophyll a apoprotein A1 [Ipomoea purpurea];; (*SWP) sp|A0A335|PSAA_COFAR (e_value=2e-173) Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=6e-171) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc10g017890.1.1 (e_value=6e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6075874-6078763 transcript_region:SL2.40ch10:6075874..6078763+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein (AHRD V1 ***- B9RL07_RICCO); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00015599g0015.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|337730872|gb|AEI70780.1| (e_value=1e-70) photosystem I P700 apoprotein A1 [Puelia olyriformis];; (*SWP) sp|Q06FW5|PSAA_PELHO (e_value=5e-71) Photosystem I P700 chlorophyll a apoprotein A1 OS=Pelargonium hortorum GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=2e-71) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc09g015340.1.1 (e_value=4e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8549610-8552077 transcript_region:SL2.40ch09:8549610..8552077+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- C3UNX2_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00013226g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|359490972|ref|XP_002279379.2| (e_value=5e-37) PREDICTED: non-specific lipid-transfer protein 2-like [Vitis vinifera];; (*SWP) sp|P82353|NLTP2_PRUAR (e_value=2e-25) Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1;; (*TAIR) AT3G18280.1 (e_value=1e-27) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:6267102-6267392 FORWARD LENGTH=96;; (*ITAG) Solyc06g069070.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39258795-39259079 transcript_region:SL2.40ch06:39258795..39259079+ go_terms:GO:0006869 functional_description:"Lipid transfer protein (AHRD V1 ***- A5JUZ7_SESIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00059451g0003.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|294; (*GB) gi|356535103|ref|XP_003536088.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100809272 [Glycine max];; (*TAIR) AT1G71050.1 (e_value=1e-15) | Symbols: HIPP20 | Heavy metal transport/detoxification superfamily protein | chr1:26803322-26803946 REVERSE LENGTH=152;; (*ITAG) Solyc05g054250.1.1 (e_value=6e-105) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:63355135-63356097 transcript_region:SL2.40ch05:63355135..63356097- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00059451g0013.1 protein AED:0.25 eAED:0.27 QI:0|0.75|0.61|1|0.75|0.76|13|0|775; (*GB) gi|73656868|gb|AAZ79373.1| (e_value=0.0) internal-motor kinesin [Nicotiana tabacum];; (*SWP) sp|Q99661|KIF2C_HUMAN (e_value=9e-117) Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2;; (*TAIR) AT3G16630.2 (e_value=0.0) | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794;; (*ITAG) Solyc05g054260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63358902-63368392 transcript_region:SL2.40ch05:63358902..63368392- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q940B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00059451g0010.1 protein AED:0.21 eAED:0.21 QI:224|0.83|0.92|1|0.75|0.76|13|356|470; (*GB) gi|118486172|gb|ABK94929.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q84W92|ANM13_ARATH (e_value=0.0) Probable histone-arginine methyltransferase 1.3 OS=Arabidopsis thaliana GN=PRMT13 PE=2 SV=3;; (*TAIR) AT3G06930.1 (e_value=0.0) | Symbols: ATPRMT4B, PRMT4B | protein arginine methyltransferase 4B | chr3:2185469-2189296 REVERSE LENGTH=534;; (*ITAG) Solyc05g054240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63345136-63354382 transcript_region:SL2.40ch05:63345136..63354382+ go_terms:GO:0008168 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 ***- D7L611_ARALY); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0008168 NbS00032953g0006.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0|1|0.5|0.33|3|0|433; (*GB) gi|225465249|ref|XP_002268014.1| (e_value=5e-161) PREDICTED: uncharacterized protein LOC100250508 [Vitis vinifera];; (*TAIR) AT1G10280.1 (e_value=7e-160) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3366795-3368739 REVERSE LENGTH=412;; (*ITAG) Solyc01g103150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83577505-83582190 transcript_region:SL2.40ch01:83577505..83582190+ functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbC25753181g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc10g084070.1.1 (e_value=9e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001846g0011.1 protein AED:0.07 eAED:0.07 QI:205|0.85|0.62|1|0.42|0.62|8|429|268; (*GB) gi|15778154|dbj|BAB68527.1| (e_value=0.0) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93214|14339_SOLLC (e_value=3e-180) 14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2;; (*TAIR) AT2G42590.2 (e_value=8e-147) | Symbols: GRF9, GF14 MU | general regulatory factor 9 | chr2:17732118-17733775 REVERSE LENGTH=262;; (*ITAG) Solyc07g053260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59058945-59063496 transcript_region:SL2.40ch07:59058945..59063496+ go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00001846g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|141; (*GB) gi|224145579|ref|XP_002325693.1| (e_value=2e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=3e-15) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G06330.1 (e_value=4e-49) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:1931671-1932266 REVERSE LENGTH=159;; (*ITAG) Solyc07g055010.2.1 (e_value=5e-99) genomic_reference:SL2.40ch07 gene_region:60479213-60480356 transcript_region:SL2.40ch07:60479213..60480356- go_terms:GO:0005507 functional_description:"Metal ion binding protein (AHRD V1 **-* B6T4Q0_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00001846g0012.1 protein AED:0.17 eAED:0.18 QI:239|0.88|0.9|1|0.77|0.8|10|258|386; (*GB) gi|302143420|emb|CBI21981.3| (e_value=1e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q08623|HDHD1_HUMAN (e_value=2e-34) Pseudouridine-5'-monophosphatase OS=Homo sapiens GN=HDHD1 PE=1 SV=3;; (*TAIR) AT4G21470.1 (e_value=2e-89) | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/FMN hydrolase | chr4:11431284-11433197 FORWARD LENGTH=379;; (*ITAG) Solyc07g053270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59064677-59071993 transcript_region:SL2.40ch07:59064677..59071993+ go_terms:GO:0003919,GO:0008531 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 ***- Q109K4_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0003919,GO:0008531 NbS00001846g0016.1 protein AED:0.05 eAED:0.05 QI:0|1|0.90|1|0.9|0.81|11|360|566; (*GB) gi|193290660|gb|ACF17638.1| (e_value=0.0) putative ketol-acid reductoisomerase [Capsicum annuum];; (*SWP) sp|Q05758|ILV5_ARATH (e_value=0.0) Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2;; (*TAIR) AT3G58610.3 (e_value=0.0) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc07g053280.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59072715-59077834 transcript_region:SL2.40ch07:59072715..59077834- go_terms:GO:0000287,GO:0070402 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D6QSY0_CATRO); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0000287,GO:0070402 NbS00015414g0001.1 protein AED:0.13 eAED:0.13 QI:488|0.75|0.8|1|1|1|5|367|593; (*GB) gi|6226239|sp|O24381.2|TLC1_SOLTU (e_value=0.0) RecName: Full=Plastidic ATP/ADP-transporter;; (*SWP) sp|O24381|TLC1_SOLTU (e_value=0.0) Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT1G80300.1 (e_value=0.0) | Symbols: NTT1, ATNTT1 | nucleotide transporter 1 | chr1:30191954-30194280 FORWARD LENGTH=624;; (*ITAG) Solyc12g042950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43908614-43911733 transcript_region:SL2.40ch12:43908614..43911733+ go_terms:GO:0005515 functional_description:"ADP/ATP carrier protein (AHRD V1 ***- Q5L657_CHLAB); contains Interpro domain(s) IPR004667 ADP/ATP carrier protein "; GO:0005515 NbS00024894g0001.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|831; (*GB) gi|224098238|ref|XP_002311140.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5S1|MKP1_ARATH (e_value=0.0) Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1;; (*TAIR) AT3G55270.1 (e_value=0.0) | Symbols: MKP1, ATMKP1 | mitogen-activated protein kinase phosphatase 1 | chr3:20496775-20499408 FORWARD LENGTH=784;; (*ITAG) Solyc05g054700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63700595-63704199 transcript_region:SL2.40ch05:63700595..63704199- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase 1 (AHRD V1 *-*- Q28HA6_XENTR); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00024894g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.71|1|0.5|0.71|7|468|284; (*GB) gi|350538741|ref|NP_001234613.1| (e_value=3e-170) beta-hexosaminidase 2 [Solanum lycopersicum];; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=2e-41) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1;; (*TAIR) AT3G55260.1 (e_value=1e-147) | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | chr3:20489317-20492858 FORWARD LENGTH=541;; (*ITAG) Solyc05g054710.2.1 (e_value=7e-173) genomic_reference:SL2.40ch05 gene_region:63711436-63721172 transcript_region:SL2.40ch05:63711436..63721172- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 "; GO:0016231 NbS00012368g0006.1 protein AED:0.12 eAED:0.12 QI:310|0.83|0.69|1|0.83|0.84|13|0|1269; (*GB) gi|255554571|ref|XP_002518324.1| (e_value=0.0) heat shock protein, putative [Ricinus communis];; (*SWP) sp|Q08276|HSP7M_SOLTU (e_value=0.0) Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1;; (*TAIR) AT5G09590.1 (e_value=0.0) | Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682;; (*ITAG) Solyc01g106210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85918285-85922197 transcript_region:SL2.40ch01:85918285..85922197+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- A2Q199_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00007476g0008.1 protein AED:0.22 eAED:0.23 QI:279|0.75|0.77|1|0.87|0.88|9|718|393; (*GB) gi|296084479|emb|CBI25038.3| (e_value=2e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GY55|TIF4B_ARATH (e_value=7e-51) Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1;; (*TAIR) AT4G14720.1 (e_value=5e-52) | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT motif family protein | chr4:8432452-8434934 REVERSE LENGTH=315;; (*ITAG) Solyc09g065630.2.1 (e_value=5e-168) genomic_reference:SL2.40ch09 gene_region:59394396-59399279 transcript_region:SL2.40ch09:59394396..59399279+ functional_description:"Protein TIFY 4B (AHRD V1 ***- TIF4B_ARATH); contains Interpro domain(s) IPR010399 Tify "; NbS00010805g0006.1 protein AED:0.25 eAED:0.25 QI:851|0.76|0.71|1|0.53|0.64|14|433|1027; (*GB) gi|328835772|dbj|BAK19067.1| (e_value=0.0) GIGANTEA [Ipomoea nil];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=0.0) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=0.0) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc04g071990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56606549-56648468 transcript_region:SL2.40ch04:56606549..56648468- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 1"; GO:0005515 NbS00017919g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.91|0.84|1|0.91|0.92|13|0|522; (*GB) gi|224120508|ref|XP_002331065.1| (e_value=0.0) plant synaptotagmin [Populus trichocarpa];; (*SWP) sp|Q5M7N9|ESYT3_XENTR (e_value=7e-33) Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1;; (*TAIR) AT1G05500.1 (e_value=0.0) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc12g009790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2996761-3004035 transcript_region:SL2.40ch12:2996761..3004035+ functional_description:"Synaptotagmin-7 (AHRD V1 *--- SYT7_HUMAN); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00017919g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|130; (*GB) gi|297805048|ref|XP_002870408.1| (e_value=2e-75) ATPAP26/PAP26 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=2e-75) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1;; (*TAIR) AT5G34850.1 (e_value=1e-76) | Symbols: ATPAP26, PAP26 | purple acid phosphatase 26 | chr5:13108475-13111217 REVERSE LENGTH=475;; (*ITAG) Solyc12g009800.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3005117-3008886 transcript_region:SL2.40ch12:3005117..3008886- go_terms:GO:0016787,GO:0046872 functional_description:"Purple acid phosphatase 3 (AHRD V1 ***- Q6J5M8_SOLTU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0016787,GO:0046872 NbS00017919g0005.1 protein AED:0.37 eAED:0.37 QI:5|0|0.5|0.5|1|1|2|0|146 NbS00034988g0006.1 protein AED:0.02 eAED:0.03 QI:353|0.66|0.75|1|0.66|0.75|4|0|206; (*GB) gi|225453002|ref|XP_002263259.1| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100253609 [Vitis vinifera];; (*TAIR) AT5G28640.1 (e_value=6e-32) | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family protein | chr5:10647831-10649620 REVERSE LENGTH=210;; (*ITAG) Solyc04g009820.2.1 (e_value=3e-34) genomic_reference:SL2.40ch04 gene_region:3139217-3143959 transcript_region:SL2.40ch04:3139217..3143959+ functional_description:"Calcium-responsive transactivator (AHRD V1 *--- CREST_XENLA); contains Interpro domain(s) IPR007726 SSXT "; NbS00006526g0012.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|181; (*ITAG) Solyc01g005040.2.1 (e_value=5e-24) genomic_reference:SL2.40ch01 gene_region:55810-56888 transcript_region:SL2.40ch01:55810..56888+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00006526g0003.1 protein AED:0.14 eAED:0.18 QI:99|1|0.5|1|0|0|2|0|827; (*GB) gi|359479705|ref|XP_003632339.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SA60|PPR6_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1;; (*TAIR) AT1G03100.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:744026-746407 REVERSE LENGTH=793;; (*ITAG) Solyc04g008410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006526g0013.1 protein AED:0.15 eAED:0.33 QI:0|0|0.2|1|0|0.4|5|853|184; (*ITAG) Solyc04g008370.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2012438-2014971 transcript_region:SL2.40ch04:2012438..2014971+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0019199,GO:0004674 NbS00006526g0006.1 protein AED:0.45 eAED:0.47 QI:0|0|0|1|1|1|2|0|82; (*GB) gi|224114121|ref|XP_002316673.1| (e_value=6e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11330.1 (e_value=7e-13) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc04g008400.1.1 (e_value=9e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2022021-2028400 transcript_region:SL2.40ch04:2022021..2028400- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00006526g0015.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|4|0|389; (*GB) gi|225424488|ref|XP_002281717.1| (e_value=2e-146) PREDICTED: PHD finger protein MALE STERILITY 1 [Vitis vinifera];; (*SWP) sp|Q9FMS5|MS1_ARATH (e_value=7e-98) PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1;; (*TAIR) AT5G22260.1 (e_value=5e-99) | Symbols: MS1 | RING/FYVE/PHD zinc finger superfamily protein | chr5:7367707-7370192 REVERSE LENGTH=672;; (*ITAG) Solyc04g008420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2038054-2041138 transcript_region:SL2.40ch04:2038054..2041138+ go_terms:GO:0003700 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00006526g0016.1 protein AED:0.34 eAED:0.37 QI:0|0|0|1|0|0|2|0|204; (*GB) gi|357486971|ref|XP_003613773.1| (e_value=1e-72) Histone-lysine N-methyltransferase MLL5 [Medicago truncatula];; (*SWP) sp|Q9FMS5|MS1_ARATH (e_value=5e-65) PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1;; (*TAIR) AT5G22260.1 (e_value=4e-66) | Symbols: MS1 | RING/FYVE/PHD zinc finger superfamily protein | chr5:7367707-7370192 REVERSE LENGTH=672;; (*ITAG) Solyc04g008420.1.1 (e_value=3e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2038054-2041138 transcript_region:SL2.40ch04:2038054..2041138+ go_terms:GO:0003700 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00005429g0002.1 protein AED:0.15 eAED:0.16 QI:81|0.66|0.5|1|1|1|4|0|360; (*GB) gi|359479058|ref|XP_002276725.2| (e_value=6e-98) PREDICTED: structure-specific endonuclease subunit SLX1 homolog 2-like [Vitis vinifera];; (*SWP) sp|Q8BX32|SLX1_MOUSE (e_value=4e-35) Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1;; (*TAIR) AT2G30350.2 (e_value=2e-86) | Symbols: | Excinuclease ABC, C subunit, N-terminal | chr2:12934237-12935742 REVERSE LENGTH=368;; (*ITAG) Solyc09g031790.2.1 (e_value=3e-146) genomic_reference:SL2.40ch09 gene_region:23880678-23882417 transcript_region:SL2.40ch09:23880678..23882417- go_terms:GO:0005622 functional_description:"Structure-specific endonuclease subunit slx1 (AHRD V1 *-*- D3PJZ8_9MAXI); contains Interpro domain(s) IPR000305 Excinuclease ABC, C subunit, N-terminal "; GO:0005622 NbS00005429g0012.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|1|1|2|0|194; (*ITAG) Solyc09g005140.1.1 (e_value=8e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:130530-142052 transcript_region:SL2.40ch09:130530..142052- functional_description:"Unknown Protein (AHRD V1)"; NbS00005429g0016.1 protein AED:0.28 eAED:0.28 QI:353|0.62|0.66|1|0.62|0.77|9|0|336; (*GB) gi|224138688|ref|XP_002326665.1| (e_value=2e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7W2|NUDT8_ARATH (e_value=1e-122) Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2;; (*TAIR) AT5G47240.1 (e_value=8e-124) | Symbols: atnudt8, NUDT8 | nudix hydrolase homolog 8 | chr5:19183806-19185467 FORWARD LENGTH=369;; (*ITAG) Solyc08g078210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59208791-59212121 transcript_region:SL2.40ch08:59208791..59212121+ go_terms:GO:0051287,GO:0047631 functional_description:"Hydrolase NUDIX family protein (AHRD V1 ***- Q2A9R5_BRAOL); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00007792g0007.1 protein AED:0.18 eAED:0.39 QI:0|0.25|0|1|0.75|0.6|5|0|290; (*GB) gi|224053246|ref|XP_002297735.1| (e_value=9e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06970.1 (e_value=7e-56) | Symbols: | Protein of unknown function (DUF810) | chr5:2158431-2166004 REVERSE LENGTH=1101;; (*ITAG) Solyc01g096540.2.1 (e_value=7e-89) genomic_reference:SL2.40ch01 gene_region:79369999-79389913 transcript_region:SL2.40ch01:79369999..79389913- functional_description:"AT5g06970/MOJ9_14 (AHRD V1 **-- Q8RX56_ARATH); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00030590g0009.1 protein AED:0.06 eAED:0.06 QI:359|0.83|0.85|1|1|1|7|660|549; (*GB) gi|297745714|emb|CBI41039.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0ABB8|ATMA_ECOLI (e_value=2e-106) Magnesium-transporting ATPase, P-type 1 OS=Escherichia coli (strain K12) GN=mgtA PE=1 SV=1;; (*TAIR) AT4G30190.1 (e_value=9e-31) | Symbols: AHA2, PMA2, HA2 | H(+)-ATPase 2 | chr4:14770820-14775920 REVERSE LENGTH=948;; (*ITAG) Solyc07g017780.2.1 (e_value=7e-32) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00030590g0014.1 protein AED:0.08 eAED:0.11 QI:0|0|0|0.66|0.5|0.33|3|0|398; (*GB) gi|225439765|ref|XP_002273310.1| (e_value=1e-131) PREDICTED: uncharacterized protein LOC100249946 [Vitis vinifera];; (*ITAG) Solyc04g014240.1.1 (e_value=1e-170) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4542851-4544056 transcript_region:SL2.40ch04:4542851..4544056+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030590g0015.1 protein AED:0.33 eAED:0.34 QI:0|0.28|0|1|0.28|0.5|8|0|310; (*GB) gi|157042755|gb|ABV02029.1| (e_value=4e-166) sucrose sythase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P49039|SUS2_SOLTU (e_value=1e-165) Sucrose synthase OS=Solanum tuberosum PE=3 SV=1;; (*TAIR) AT3G43190.1 (e_value=6e-160) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc07g042520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53140157-53143939 transcript_region:SL2.40ch07:53140157..53143939- go_terms:GO:0016157 functional_description:"Sucrose synthase 4 (AHRD V1 **** Q7Y078_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00030590g0016.1 protein AED:0.42 eAED:0.44 QI:0|0.25|0.11|0.77|0.62|0.66|9|0|313; (*GB) gi|321273093|gb|ADW80585.1| (e_value=1e-85) sucrose synthase 2 [Populus tomentosa];; (*SWP) sp|P13708|SUSY_SOYBN (e_value=2e-82) Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2;; (*TAIR) AT3G43190.1 (e_value=5e-77) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc07g042520.2.1 (e_value=5e-123) genomic_reference:SL2.40ch07 gene_region:53140157-53143939 transcript_region:SL2.40ch07:53140157..53143939- go_terms:GO:0016157 functional_description:"Sucrose synthase 4 (AHRD V1 **** Q7Y078_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00030590g0012.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0|3|0|161; (*GB) gi|356538137|ref|XP_003537561.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100805400 [Glycine max];; (*TAIR) AT5G65340.1 (e_value=7e-36) | Symbols: | Protein of unknown function, DUF617 | chr5:26113684-26114445 REVERSE LENGTH=253;; (*ITAG) Solyc04g014230.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4530800-4532108 transcript_region:SL2.40ch04:4530800..4532108- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00043137g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|1|0.75|0.6|5|5|317; (*GB) gi|225435712|ref|XP_002283501.1| (e_value=5e-139) PREDICTED: phytoene synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P08196|PSY1_SOLLC (e_value=7e-121) Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2;; (*TAIR) AT5G17230.3 (e_value=1e-115) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=437;; (*ITAG) Solyc01g005940.2.1 (e_value=6e-177) genomic_reference:SL2.40ch01 gene_region:613955-617183 transcript_region:SL2.40ch01:613955..617183+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 3"; GO:0046905,GO:0016767 NbS00043137g0006.1 protein AED:0.38 eAED:0.44 QI:5|0.66|0.7|1|0.77|0.9|10|0|262; (*GB) gi|225435710|ref|XP_002285694.1| (e_value=3e-111) PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Vitis vinifera];; (*SWP) sp|Q9XGH7|PP2A_TOBAC (e_value=8e-111) Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G58500.1 (e_value=4e-107) | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635503-21638911 REVERSE LENGTH=313;; (*ITAG) Solyc01g005950.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:617606-624776 transcript_region:SL2.40ch01:617606..624776- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00009950g0001.1 protein AED:0.21 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|278; (*GB) gi|224119696|ref|XP_002318137.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g080320.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62143011-62144084 transcript_region:SL2.40ch04:62143011..62144084+ functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00058771g0009.1 protein AED:0.10 eAED:0.10 QI:127|1|1|1|1|0.8|5|139|409; (*GB) gi|297735617|emb|CBI18111.3| (e_value=8e-170) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G38320.1 (e_value=5e-153) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc02g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41134514-41138446 transcript_region:SL2.40ch02:41134514..41138446+ go_terms:GO:0006508 functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0006508 NbS00058771g0010.1 protein AED:0.58 eAED:0.58 QI:0|0|0.2|0.2|1|1|5|395|116 NbC25532464g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|255565525|ref|XP_002523753.1| (e_value=8e-92) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q5IGR6|EXT1C_DANRE (e_value=3e-26) Exostosin-1c OS=Danio rerio GN=ext1c PE=2 SV=1;; (*TAIR) AT1G80290.2 (e_value=5e-85) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:30188420-30189574 FORWARD LENGTH=337;; (*ITAG) Solyc08g006080.1.1 (e_value=3e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:831675-832673 transcript_region:SL2.40ch08:831675..832673- go_terms:GO:0016757 functional_description:"Exostosin (AHRD V1 *-*- Q98SV5_XENLA); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0016757 NbS00013480g0001.1 protein AED:0.39 eAED:0.40 QI:0|0|0.5|1|0|0.5|2|337|90; (*GB) gi|225437551|ref|XP_002276108.1| (e_value=4e-17) PREDICTED: uncharacterized protein LOC100250421 [Vitis vinifera];; (*ITAG) Solyc01g097360.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:80019790-80020417 transcript_region:SL2.40ch01:80019790..80020417+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013480g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|297; (*GB) gi|224123404|ref|XP_002319070.1| (e_value=2e-82) ammonium transporter [Populus trichocarpa];; (*SWP) sp|Q10CV4|AMT41_ORYSJ (e_value=4e-48) Putative ammonium transporter 4 member 1 OS=Oryza sativa subsp. japonica GN=AMT4-1 PE=2 SV=1;; (*TAIR) AT2G38290.2 (e_value=9e-45) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16041864 REVERSE LENGTH=359;; (*ITAG) Solyc01g097370.1.1 (e_value=3e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80020656-80022438 transcript_region:SL2.40ch01:80020656..80022438- go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9I5F0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00049673g0014.1 protein AED:0.16 eAED:0.16 QI:173|0.42|0.37|1|0.42|0.37|8|0|759; (*GB) gi|297735002|emb|CBI17364.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82485|OPT7_ARATH (e_value=0.0) Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1;; (*TAIR) AT4G10770.1 (e_value=0.0) | Symbols: ATOPT7, OPT7 | oligopeptide transporter 7 | chr4:6628646-6632517 REVERSE LENGTH=766;; (*ITAG) Solyc03g033460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9297101-9302965 transcript_region:SL2.40ch03:9297101..9302965+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00049673g0012.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|0.5|0.66|3|0|202; (*GB) gi|113205445|gb|AAW28576.2| (e_value=4e-49) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=1e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00049673g0011.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|1|1|3|0|107 NbS00049673g0013.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|4|0|186 NbS00049513g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|1|1|1|3|0|501; (*GB) gi|255545230|ref|XP_002513676.1| (e_value=0.0) arsenite transport protein, putative [Ricinus communis];; (*SWP) sp|Q54GU0|ARSB_DICDI (e_value=1e-56) Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1;; (*TAIR) AT1G02260.1 (e_value=0.0) | Symbols: | Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502;; (*ITAG) Solyc06g036100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22211265-22213759 transcript_region:SL2.40ch06:22211265..22213759- go_terms:GO:0015446 functional_description:"Citrate transporter family protein (AHRD V1 ***- B6U1B5_MAIZE); contains Interpro domain(s) IPR004680 Divalent ion symporter "; GO:0015446 NbS00018220g0004.1 protein AED:0.06 eAED:0.07 QI:0|1|0.57|1|0.66|0.57|7|0|576; (*GB) gi|348659079|gb|AEP82777.1| (e_value=0.0) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q84LB2|AFS1_MALDO (e_value=2e-150) (E,E)-alpha-farnesene synthase OS=Malus domestica GN=AFS1 PE=1 SV=2;; (*TAIR) AT2G24210.1 (e_value=1e-110) | Symbols: TPS10 | terpene synthase 10 | chr2:10294330-10297401 FORWARD LENGTH=591;; (*ITAG) Solyc02g079890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38861445-38864616 transcript_region:SL2.40ch02:38861445..38864616- go_terms:GO:0034768,GO:0050551 functional_description:"Beta-ocimene synthase (AHRD V1 **** B1P189_PHALU); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00050256g0002.1 protein AED:0.17 eAED:0.17 QI:197|1|1|1|0.66|0.75|4|150|457; (*GB) gi|86212374|gb|ABC87760.1| (e_value=0.0) jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata];; (*SWP) sp|Q9SKE2|JAR1_ARATH (e_value=0.0) Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2;; (*TAIR) AT2G46370.2 (e_value=0.0) | Symbols: JAR1, FIN219 | Auxin-responsive GH3 family protein | chr2:19034342-19036369 FORWARD LENGTH=575;; (*ITAG) Solyc01g095580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78555303-78558003 transcript_region:SL2.40ch01:78555303..78558003+ go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9I8V1_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00004792g0016.1 protein AED:0.26 eAED:0.27 QI:7|0.55|0.4|1|0.77|0.7|10|0|938; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=0.0) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00004792g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=1e-100) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=3e-102) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=7e-63) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=8e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00004792g0017.1 protein AED:0.24 eAED:0.25 QI:249|0.73|0.68|1|0.46|0.62|16|0|815; (*GB) gi|85069279|gb|ABC69711.1| (e_value=0.0) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=0.0) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=0.0) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00044248g0004.1 protein AED:0.17 eAED:0.20 QI:0|0.5|0.4|1|0.5|0.4|5|0|312; (*GB) gi|359482307|ref|XP_002277445.2| (e_value=7e-79) PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera];; (*SWP) sp|Q9ZQW8|U2AFA_ORYSJ (e_value=7e-71) Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1;; (*TAIR) AT1G27650.1 (e_value=2e-71) | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small subunit, putative | chr1:9615152-9616042 FORWARD LENGTH=296;; (*ITAG) Solyc10g083640.1.1 (e_value=4e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62756425-62760116 transcript_region:SL2.40ch10:62756425..62760116- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00034094g0004.1 protein AED:0.30 eAED:0.30 QI:193|0.66|0.75|1|0.66|0.75|4|364|147; (*GB) gi|224081705|ref|XP_002306478.1| (e_value=5e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FH99|FB302_ARATH (e_value=5e-43) F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1;; (*TAIR) AT5G67140.1 (e_value=4e-44) | Symbols: | F-box/RNI-like superfamily protein | chr5:26794009-26795213 REVERSE LENGTH=228;; (*ITAG) Solyc02g093220.2.1 (e_value=2e-63) genomic_reference:SL2.40ch02 gene_region:48735362-48737955 transcript_region:SL2.40ch02:48735362..48737955- functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 ***- B6TAC3_MAIZE); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00034094g0005.1 protein AED:0.33 eAED:0.37 QI:0|0.66|0.42|1|1|0.85|7|0|285; (*GB) gi|356563608|ref|XP_003550053.1| (e_value=2e-111) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=2e-107) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT5G67130.1 (e_value=2e-108) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr5:26791599-26793649 FORWARD LENGTH=426;; (*ITAG) Solyc02g093210.2.1 (e_value=5e-129) genomic_reference:SL2.40ch02 gene_region:48731185-48735258 transcript_region:SL2.40ch02:48731185..48735258+ go_terms:GO:0023034,GO:0006629,GO:0005975 functional_description:"MAPprotein kinase-like protein (AHRD V1 **-- Q6YW97_ORYSJ); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005975 NbS00031780g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.2|0.16|0.83|1|1|6|0|681; (*GB) gi|224103953|ref|XP_002313258.1| (e_value=5e-136) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12300.1 (e_value=8e-74) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:3978508-3979632 REVERSE LENGTH=374;; (*ITAG) Solyc11g064840.1.1 (e_value=2e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47142946-47144115 transcript_region:SL2.40ch11:47142946..47144115- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7M4I2_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00031780g0003.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.25|1|1|4|0|90 NbS00050845g0004.1 protein AED:0.26 eAED:0.26 QI:392|0.2|0.16|0.33|0.2|0.5|6|0|128; (*ITAG) Solyc04g049010.2.1 (e_value=6e-15) genomic_reference:SL2.40ch04 gene_region:38313587-38355062 transcript_region:SL2.40ch04:38313587..38355062- go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 *-** A2ATK1_MOUSE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbS00050845g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|110 NbS00050845g0005.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|0|0|2|0|131; (*ITAG) Solyc01g014060.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:11139275-11140208 transcript_region:SL2.40ch01:11139275..11140208- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00030316g0002.1 protein AED:0.24 eAED:0.30 QI:0|0|0|0.6|1|1|5|0|352; (*GB) gi|296881978|gb|ADH82414.1| (e_value=2e-124) actin [Jatropha curcas];; (*SWP) sp|P53492|ACT7_ARATH (e_value=5e-125) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=4e-126) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g071260.2.1 (e_value=7e-121) genomic_reference:SL2.40ch04 gene_region:55789259-55790792 transcript_region:SL2.40ch04:55789259..55790792- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q5XPX5_SACOF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00040188g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.87|1|1|1|8|317|767; (*GB) gi|790479|emb|CAA58701.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P21616|AVP_VIGRR (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc03g117480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60677249-60682108 transcript_region:SL2.40ch03:60677249..60682108- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (AHRD V1 **** C7HW54_9FIRM); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00045695g0002.1 protein AED:0.16 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|113 NbS00045695g0008.1 protein AED:0.13 eAED:0.13 QI:3|1|1|1|0.5|0.66|3|560|467; (*GB) gi|255576302|ref|XP_002529044.1| (e_value=1e-165) Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=4e-55) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.2 (e_value=2e-137) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495102 FORWARD LENGTH=495;; (*ITAG) Solyc11g012470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5302951-5305498 transcript_region:SL2.40ch11:5302951..5305498- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00023143g0001.1 protein AED:0.00 eAED:0.00 QI:166|1|0.5|1|0|0|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; NbS00023143g0015.1 protein AED:0.18 eAED:0.18 QI:66|0.5|0.6|1|0.5|0.6|5|416|67; (*GB) gi|296082089|emb|CBI21094.3| (e_value=3e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=1e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=3e-28) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00023143g0014.1 protein AED:0.22 eAED:0.25 QI:0|0.58|0.53|1|0.75|0.76|13|0|667; (*GB) gi|255572779|ref|XP_002527322.1| (e_value=0.0) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q42556|PMA9_ARATH (e_value=0.0) ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2;; (*TAIR) AT1G80660.1 (e_value=0.0) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc12g010360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3413621-3421147 transcript_region:SL2.40ch12:3413621..3421147+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00007425g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.72|0.81|0.4|0.72|11|0|299; (*GB) gi|224082148|ref|XP_002306582.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y282|ERGI3_HUMAN (e_value=2e-108) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1;; (*TAIR) AT1G36050.2 (e_value=0.0) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386;; (*ITAG) Solyc04g072910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57470199-57481642 transcript_region:SL2.40ch04:57470199..57481642- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00007425g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|361; (*GB) gi|358008884|gb|AET99101.1| (e_value=2e-106) dehydration-responsive element-binding protein DREB4 [Solanum tuberosum];; (*SWP) sp|Q8H1E4|RAP24_ARATH (e_value=1e-55) Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1;; (*TAIR) AT1G78080.1 (e_value=7e-57) | Symbols: RAP2.4 | related to AP2 4 | chr1:29364790-29365794 FORWARD LENGTH=334;; (*ITAG) Solyc04g072900.1.1 (e_value=5e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57461458-57462252 transcript_region:SL2.40ch04:57461458..57462252+ go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00043508g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.42|0.85|0.83|0.85|7|0|449; (*GB) gi|359475867|ref|XP_003631765.1| (e_value=0.0) PREDICTED: calcium uptake protein 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9BPX6|MICU1_HUMAN (e_value=3e-44) Calcium uptake protein 1, mitochondrial OS=Homo sapiens GN=MICU1 PE=1 SV=1;; (*TAIR) AT4G32060.1 (e_value=4e-174) | Symbols: | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498;; (*ITAG) Solyc06g018050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12748792-12756956 transcript_region:SL2.40ch06:12748792..12756956+ go_terms:GO:0005515 functional_description:"Calcium-binding mitochondrial carrier protein (AHRD V1 **-* CMC_DICDI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00043508g0005.1 protein AED:0.42 eAED:0.55 QI:0|0.66|0.75|1|0.33|0.5|4|217|148; (*GB) gi|225463402|ref|XP_002273897.1| (e_value=1e-47) PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase isoform 1 [Vitis vinifera];; (*SWP) sp|B3ECB9|PHS_CHLL2 (e_value=6e-19) Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=Clim_1125 PE=3 SV=1;; (*TAIR) AT1G29810.1 (e_value=1e-48) | Symbols: | Transcriptional coactivator/pterin dehydratase | chr1:10435606-10437406 REVERSE LENGTH=187;; (*ITAG) Solyc02g005510.2.1 (e_value=6e-60) genomic_reference:SL2.40ch02 gene_region:3472102-3474920 transcript_region:SL2.40ch02:3472102..3474920- go_terms:GO:0003713 functional_description:"Pterin-4-alpha-carbinolamine dehydratase (AHRD V1 ***- B6T9C1_MAIZE); contains Interpro domain(s) IPR001533 Transcriptional coactivator/pterin dehydratase "; GO:0003713 NbS00043508g0007.1 protein AED:0.47 eAED:0.59 QI:56|1|0.5|1|0|0|2|0|52 NbS00043821g0010.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0.33|3|0|336; (*GB) gi|4960089|gb|AAD34610.1|AF149981_1 (e_value=1e-147) sucrose transporter-like protein [Nicotiana tabacum];; (*SWP) sp|Q9C8X2|SUC5_ARATH (e_value=4e-79) Sucrose transport protein SUC5 OS=Arabidopsis thaliana GN=SUC5 PE=1 SV=1;; (*TAIR) AT1G71890.1 (e_value=3e-80) | Symbols: SUC5, ATSUC5 | Major facilitator superfamily protein | chr1:27058492-27060573 FORWARD LENGTH=512;; (*ITAG) Solyc11g017010.1.1 (e_value=3e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7760827-7764617 transcript_region:SL2.40ch11:7760827..7764617+ go_terms:GO:0005887,GO:0016021 functional_description:"Sucrose transporter (AHRD V1 ***- A8E0N3_TOBAC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0005887,GO:0016021 NbS00043821g0009.1 protein AED:0.24 eAED:0.27 QI:43|0.75|0.69|1|0.5|0.76|13|589|678; (*GB) gi|225463926|ref|XP_002266039.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263351 [Vitis vinifera];; (*TAIR) AT1G34320.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657;; (*ITAG) Solyc06g065460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37243663-37253947 transcript_region:SL2.40ch06:37243663..37253947- functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00057019g0005.1 protein AED:0.29 eAED:0.29 QI:110|0.5|0.6|1|1|1|5|157|211; (*ITAG) Solyc12g010640.1.1 (e_value=4e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3591089-3592637 transcript_region:SL2.40ch12:3591089..3592637+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010465g0007.1 protein AED:0.06 eAED:0.06 QI:443|0.93|0.94|1|0.81|0.70|17|766|423; (*GB) gi|350535735|ref|NP_001234210.1| (e_value=0.0) calcineurin B-like interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q9LDI3|CIPKO_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1;; (*TAIR) AT5G35410.1 (e_value=0.0) | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein kinase superfamily protein | chr5:13634933-13638062 FORWARD LENGTH=446;; (*ITAG) Solyc12g009570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2827273-2833740 transcript_region:SL2.40ch12:2827273..2833740- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 09 (AHRD V1 ***- A5BZV3_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00010465g0005.1 protein AED:0.16 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|81; (*GB) gi|357478119|ref|XP_003609345.1| (e_value=2e-18) EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula]; NbS00056997g0003.1 protein AED:0.27 eAED:0.27 QI:218|1|1|1|1|1|3|277|931; (*GB) gi|8919178|emb|CAB96077.1| (e_value=0.0) alpha-glucosidase [Solanum tuberosum];; (*SWP) sp|Q9S7Y7|XYL1_ARATH (e_value=0.0) Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1;; (*TAIR) AT1G68560.1 (e_value=0.0) | Symbols: ATXYL1, XYL1, TRG1 | alpha-xylosidase 1 | chr1:25734435-25737897 REVERSE LENGTH=915;; (*ITAG) Solyc05g009470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3636010-3643963 transcript_region:SL2.40ch05:3636010..3643963- go_terms:GO:0004558 functional_description:"Alpha-glucosidase (AHRD V1 **** Q9LEC9_SOLTU); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00034864g0009.1 protein AED:0.11 eAED:0.11 QI:366|1|1|1|0.91|0.92|13|365|636; (*GB) gi|255557809|ref|XP_002519934.1| (e_value=0.0) reticulon3-A3, putative [Ricinus communis];; (*TAIR) AT2G35610.1 (e_value=0.0) | Symbols: XEG113 | xyloglucanase 113 | chr2:14947617-14951106 REVERSE LENGTH=644;; (*ITAG) Solyc08g075340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56632625-56643386 transcript_region:SL2.40ch08:56632625..56643386+ go_terms:GO:0005783 functional_description:"Glycosyltransferase-like protein (AHRD V1 ***- D8SY69_SELML); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00034864g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|913; (*GB) gi|225427607|ref|XP_002269121.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial [Vitis vinifera];; (*SWP) sp|O49680|PP324_ARATH (e_value=4e-170) Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=2 SV=2;; (*TAIR) AT4G19220.1 (e_value=8e-166) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=932;; (*ITAG) Solyc08g075350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56643807-56646614 transcript_region:SL2.40ch08:56643807..56646614+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MGT8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00034864g0008.1 protein AED:0.10 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|209; (*GB) gi|255557811|ref|XP_002519935.1| (e_value=3e-88) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=1e-32) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT3G19300.1 (e_value=4e-36) | Symbols: | Protein kinase superfamily protein | chr3:6690242-6693210 REVERSE LENGTH=663;; (*ITAG) Solyc08g075330.1.1 (e_value=7e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56625503-56627175 transcript_region:SL2.40ch08:56625503..56627175- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / kinase/ protein serine / threonine kinase (AHRD V1 **** C5DB47_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00057799g0001.1 protein AED:0.08 eAED:0.31 QI:60|0|0|1|0|0|2|0|121; (*GB) gi|57013884|ref|YP_173358.1| (e_value=2e-46) orf297a [Nicotiana tabacum]; NbS00046126g0001.1 protein AED:0.26 eAED:0.26 QI:3|0.62|0.55|1|1|1|9|0|614; (*GB) gi|255556695|ref|XP_002519381.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=3e-146) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT5G49760.1 (e_value=1e-165) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20216679-20221052 FORWARD LENGTH=953;; (*ITAG) Solyc01g102680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83176089-83185689 transcript_region:SL2.40ch01:83176089..83185689+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00024928g0013.1 protein AED:0.20 eAED:0.21 QI:0|0.85|0.75|1|0.85|0.87|8|682|663; (*GB) gi|356546820|ref|XP_003541820.1| (e_value=0.0) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max];; (*SWP) sp|Q9MAH1|TTL1_ARATH (e_value=0.0) TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1;; (*TAIR) AT1G53300.1 (e_value=0.0) | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like 1 | chr1:19879726-19882375 FORWARD LENGTH=699;; (*ITAG) Solyc07g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62483556-62487561 transcript_region:SL2.40ch07:62483556..62487561- go_terms:GO:0005488,GO:0045454 functional_description:"DnaJ homolog subfamily C member 7 (AHRD V1 *--- B5X1N5_SALSA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005488,GO:0045454 NbS00024928g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|163; (*GB) gi|377656755|gb|AFB73931.1| (e_value=2e-82) LAT52-like protein [Lycium barbarum];; (*SWP) sp|P13447|LAT52_SOLLC (e_value=2e-83) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=1e-35) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc12g014240.1.1 (e_value=4e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5066635-5068047 transcript_region:SL2.40ch12:5066635..5068047- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00024928g0008.1 protein AED:0.13 eAED:0.15 QI:0|0.7|0.45|1|0.7|0.81|11|337|973; (*GB) gi|225461660|ref|XP_002285441.1| (e_value=0.0) PREDICTED: phosphoenolpyruvate carboxylase, housekeeping isozyme isoform 1 [Vitis vinifera];; (*SWP) sp|P27154|CAPP_TOBAC (e_value=0.0) Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1;; (*TAIR) AT2G42600.1 (e_value=0.0) | Symbols: ATPPC2, PPC2 | phosphoenolpyruvate carboxylase 2 | chr2:17734541-17738679 REVERSE LENGTH=963;; (*ITAG) Solyc12g014250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5069479-5074778 transcript_region:SL2.40ch12:5069479..5074778- go_terms:GO:0006099,GO:0003824 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- Q9SCB3_SOLLC); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0006099,GO:0003824 NbS00033034g0002.1 protein AED:0.04 eAED:0.06 QI:0|1|0.5|1|0|0|2|795|737; (*GB) gi|225450452|ref|XP_002276575.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g62590-like [Vitis vinifera];; (*SWP) sp|Q9FMF6|PP444_ARATH (e_value=1e-52) Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1;; (*TAIR) AT5G64320.1 (e_value=1e-53) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:25723247-25725439 REVERSE LENGTH=730;; (*ITAG) Solyc01g101150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82756619-82759013 transcript_region:SL2.40ch01:82756619..82759013+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033034g0004.1 protein AED:0.09 eAED:0.12 QI:0|0.75|0.6|1|1|1|5|0|371; (*GB) gi|348659071|gb|AEP82773.1| (e_value=0.0) viridiflorene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=0.0) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=2e-88) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82781170-82783261 transcript_region:SL2.40ch01:82781170..82783261+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00033034g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.66|3|0|641; (*GB) gi|359487696|ref|XP_002276596.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242533 [Vitis vinifera];; (*TAIR) AT5G61190.1 (e_value=2e-86) | Symbols: | putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain | chr5:24615480-24619886 FORWARD LENGTH=995;; (*ITAG) Solyc01g101140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82748479-82753118 transcript_region:SL2.40ch01:82748479..82753118+ functional_description:"LOC100005105 protein (Fragment) (AHRD V1 *-*- A4QNR9_DANRE); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00033034g0015.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.66|1|1|3|0|389; (*GB) gi|224110268|ref|XP_002315467.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09520.1 (e_value=3e-23) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3071248-3072030 REVERSE LENGTH=260;; (*ITAG) Solyc01g101160.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:82762441-82763945 transcript_region:SL2.40ch01:82762441..82763945+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033034g0013.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0.5|2|0|60; (*GB) gi|255543024|ref|XP_002512575.1| (e_value=8e-15) nucleic acid binding protein, putative [Ricinus communis];; (*ITAG) Solyc01g101140.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:82748479-82753118 transcript_region:SL2.40ch01:82748479..82753118+ functional_description:"LOC100005105 protein (Fragment) (AHRD V1 *-*- A4QNR9_DANRE); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00033034g0005.1 protein AED:0.54 eAED:0.56 QI:0|0.5|0|0.66|1|1|3|0|85; (*GB) gi|75102186|sp|Q39980.1|VTSS3_HYOMU (e_value=1e-20) RecName: Full=Vetispiradiene synthase 3; Short=HVS3;; (*SWP) sp|Q39980|VTSS3_HYOMU (e_value=3e-22) Vetispiradiene synthase 3 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1;; (*ITAG) Solyc01g101180.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:82781170-82783261 transcript_region:SL2.40ch01:82781170..82783261+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00061293g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0.5|0.33|3|0|379; (*GB) gi|359489978|ref|XP_002270380.2| (e_value=2e-149) PREDICTED: uncharacterized protein At1g28695 [Vitis vinifera];; (*SWP) sp|Q3E6Y3|Y1869_ARATH (e_value=1e-105) Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1;; (*TAIR) AT1G28710.3 (e_value=9e-114) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:10086850-10088025 REVERSE LENGTH=340;; (*ITAG) Solyc03g094110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49308825-49312747 transcript_region:SL2.40ch03:49308825..49312747- functional_description:"Regulatory protein (AHRD V1 **-- B6TR81_MAIZE)"; NbS00026764g0002.1 protein AED:0.18 eAED:0.18 QI:243|1|1|1|0.25|0.4|5|352|121; (*GB) gi|302142695|emb|CBI19898.3| (e_value=5e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q1RMP0|RPA12_BOVIN (e_value=1e-16) DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1 PE=2 SV=1;; (*TAIR) AT3G25940.1 (e_value=1e-35) | Symbols: | TFIIB zinc-binding protein | chr3:9495104-9495942 FORWARD LENGTH=119;; (*ITAG) Solyc04g054510.2.1 (e_value=1e-82) genomic_reference:SL2.40ch04 gene_region:51781312-51786992 transcript_region:SL2.40ch04:51781312..51786992- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase I subunit RPA12 (AHRD V1 **** B5X948_SALSA); contains Interpro domain(s) IPR001222 Zinc finger, TFIIS-type "; GO:0003899 NbS00013429g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|4|0|303; (*GB) gi|359490076|ref|XP_002264669.2| (e_value=0.0) PREDICTED: WD repeat-containing protein WRAP73 [Vitis vinifera];; (*SWP) sp|Q9P2S5|WRP73_HUMAN (e_value=4e-109) WD repeat-containing protein WRAP73 OS=Homo sapiens GN=WRAP73 PE=2 SV=1;; (*TAIR) AT5G07590.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:2401712-2403731 REVERSE LENGTH=458;; (*ITAG) Solyc03g093490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48279419-48282209 transcript_region:SL2.40ch03:48279419..48282209+ go_terms:GO:0005515 functional_description:"WD-repeat protein (AHRD V1 ***- Q6V5I1_SISIR); contains Interpro domain(s) IPR011044 Quinoprotein amine dehydrogenase, beta chain-like "; GO:0005515 NbS00061425g0001.1 protein AED:0.10 eAED:0.10 QI:325|1|0.5|1|0|0|2|0|102; (*GB) gi|42569790|ref|NP_181548.2| (e_value=2e-41) alpha-1,2-mannosyltransferase [Arabidopsis thaliana];; (*SWP) sp|Q9XEE9|ALG11_ARATH (e_value=5e-43) GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2;; (*TAIR) AT2G40190.1 (e_value=4e-44) | Symbols: LEW3 | UDP-Glycosyltransferase superfamily protein | chr2:16785232-16787257 FORWARD LENGTH=463;; (*ITAG) Solyc10g076800.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59085382-59089499 transcript_region:SL2.40ch10:59085382..59089499- go_terms:GO:0009058 functional_description:"Alpha-1 2-mannosyltransferase alg11 (AHRD V1 **-- B6SM36_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00047776g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.77|0.5|0.9|0.88|0.8|10|0|679; (*GB) gi|359495451|ref|XP_002274621.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263200 [Vitis vinifera];; (*SWP) sp|Q9M1V8|P2C50_ARATH (e_value=4e-96) Putative protein phosphatase 2C 50 OS=Arabidopsis thaliana GN=At3g63320 PE=3 SV=1;; (*TAIR) AT3G63340.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc09g065650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59424149-59448182 transcript_region:SL2.40ch09:59424149..59448182- go_terms:GO:0006468,GO:0003824 functional_description:"Protein phosphatase 1L-like protein (AHRD V1 *--- D0NIG5_PHYIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0006468,GO:0003824 NbS00047776g0006.1 protein AED:0.36 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|194; (*GB) gi|255559843|ref|XP_002520940.1| (e_value=2e-58) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q93YS2|P2C51_ARATH (e_value=3e-56) Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2;; (*TAIR) AT3G63340.2 (e_value=3e-55) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1075; NbS00039273g0006.1 protein AED:0.00 eAED:0.00 QI:59|1|1|1|1|1|2|75|84; (*ITAG) Solyc04g078450.2.1 (e_value=4e-18) genomic_reference:SL2.40ch04 gene_region:60777667-60778177 transcript_region:SL2.40ch04:60777667..60778177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039273g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0.5|2|0|294; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=6e-84) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=5e-75) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=8e-81) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc04g078440.2.1 (e_value=9e-157) genomic_reference:SL2.40ch04 gene_region:60775938-60777179 transcript_region:SL2.40ch04:60775938..60777179+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7J664_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbC26288570g0002.1 protein AED:0.57 eAED:0.57 QI:8|0|0.5|0.5|1|1|2|0|97; (*ITAG) Solyc11g013090.1.1 (e_value=4e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5934667-5948491 transcript_region:SL2.40ch11:5934667..5948491+ go_terms:GO:0005529,GO:0009274 functional_description:"Monofunctional biosynthetic peptidoglycan transglycosylase (AHRD V1 *-*- MTGA_THIDA); contains Interpro domain(s) IPR001264 Glycosyl transferase, family 51 "; GO:0005529,GO:0009274 NbS00003470g0013.1 protein AED:0.18 eAED:0.18 QI:139|1|1|1|1|1|2|268|273; (*GB) gi|224115082|ref|XP_002316935.1| (e_value=7e-146) predicted protein [Populus trichocarpa];; (*TAIR) AT4G27350.1 (e_value=5e-130) | Symbols: | Protein of unknown function (DUF1223) | chr4:13690979-13692621 REVERSE LENGTH=278;; (*ITAG) Solyc07g063620.2.1 (e_value=7e-180) genomic_reference:SL2.40ch07 gene_region:63268542-63271127 transcript_region:SL2.40ch07:63268542..63271127+ functional_description:"Uncharacterized secreted protein (AHRD V1 **-- B6TUX2_MAIZE); contains Interpro domain(s) IPR010634 Protein of unknown function DUF1223 "; NbS00003470g0009.1 protein AED:0.46 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|92; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-25) hypothetical protein [Nicotiana tabacum]; NbS00003470g0014.1 protein AED:0.00 eAED:0.00 QI:130|1|1|1|1|1|2|305|111; (*GB) gi|388505062|gb|AFK40597.1| (e_value=7e-42) unknown [Lotus japonicus];; (*SWP) sp|Q22799|DYL1_CAEEL (e_value=1e-20) Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1;; (*TAIR) AT4G27360.1 (e_value=2e-38) | Symbols: | Dynein light chain type 1 family protein | chr4:13694032-13694517 FORWARD LENGTH=103;; (*ITAG) Solyc07g063610.2.1 (e_value=4e-59) genomic_reference:SL2.40ch07 gene_region:63265503-63266935 transcript_region:SL2.40ch07:63265503..63266935- go_terms:GO:0042803 functional_description:"Dynein light chain 2 cytoplasmic (AHRD V1 ***- C3KIM6_ANOFI); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00003470g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|148|96; (*GB) gi|225447649|ref|XP_002274919.1| (e_value=9e-26) PREDICTED: uncharacterized protein LOC100261290 [Vitis vinifera];; (*TAIR) AT4G10270.1 (e_value=2e-20) | Symbols: | Wound-responsive family protein | chr4:6374805-6375077 FORWARD LENGTH=90;; (*ITAG) Solyc07g063640.1.1 (e_value=3e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63280045-63280344 transcript_region:SL2.40ch07:63280045..63280344- functional_description:"Wound induced protein (AHRD V1 ***- B6SKC8_MAIZE)"; NbS00003470g0015.1 protein AED:0.26 eAED:0.26 QI:0|0.85|0.87|1|0.85|0.75|8|282|285; (*GB) gi|388503260|gb|AFK39696.1| (e_value=5e-103) unknown [Lotus japonicus];; (*SWP) sp|Q1ECE0|VAP41_ARATH (e_value=2e-101) Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1;; (*TAIR) AT5G54110.1 (e_value=1e-102) | Symbols: ATMAMI, MAMI | membrane-associated mannitol-induced | chr5:21958356-21960367 FORWARD LENGTH=266;; (*ITAG) Solyc07g063630.2.1 (e_value=2e-117) genomic_reference:SL2.40ch07 gene_region:63271770-63275250 transcript_region:SL2.40ch07:63271770..63275250- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00003470g0016.1 protein AED:0.42 eAED:0.49 QI:0|0|0.66|1|0|0.66|3|125|111 NbS00035926g0003.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|224142451|ref|XP_002324571.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|P48001|KNAT4_ARATH (e_value=6e-35) Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3;; (*TAIR) AT5G11060.1 (e_value=5e-36) | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | chr5:3510408-3512967 FORWARD LENGTH=393;; (*ITAG) Solyc12g010410.1.1 (e_value=3e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3455837-3459360 transcript_region:SL2.40ch12:3455837..3459360+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634,GO:0006355,GO:0045449 NbS00037396g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|393; (*GB) gi|356553034|ref|XP_003544863.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100781040 [Glycine max];; (*TAIR) AT2G04280.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480277-1481983 REVERSE LENGTH=568;; (*ITAG) Solyc12g006200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:740265-741998 transcript_region:SL2.40ch12:740265..741998+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037396g0004.1 protein AED:0.48 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|134; (*GB) gi|224129234|ref|XP_002320534.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04280.1 (e_value=2e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480277-1481983 REVERSE LENGTH=568;; (*ITAG) Solyc12g006200.1.1 (e_value=2e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:740265-741998 transcript_region:SL2.40ch12:740265..741998+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005804g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.87|0.66|1|0.75|0.88|9|372|343; (*GB) gi|295640957|gb|ADG22608.1| (e_value=3e-167) diacylglycerol acyltransferase type 2 [Olea europaea];; (*SWP) sp|Q9ASU1|DGAT2_ARATH (e_value=3e-131) Diacylglycerol O-acyltransferase 2 OS=Arabidopsis thaliana GN=DGAT2 PE=2 SV=1;; (*TAIR) AT3G51520.1 (e_value=2e-132) | Symbols: | diacylglycerol acyltransferase family | chr3:19110739-19112518 FORWARD LENGTH=314;; (*ITAG) Solyc02g068240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32811139-32816106 transcript_region:SL2.40ch02:32811139..32816106- go_terms:GO:0004144 functional_description:"Diacylglycerol acyltransferase family (AHRD V1 **** D7LTV7_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0004144 NbS00012665g0003.1 protein AED:0.01 eAED:0.01 QI:122|1|0.87|1|1|1|8|347|517; (*GB) gi|225430007|ref|XP_002284115.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Vitis vinifera];; (*SWP) sp|A7SDW5|EIF3L_NEMVE (e_value=6e-161) Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1;; (*TAIR) AT5G25757.1 (e_value=0.0) | Symbols: | RNA polymerase I-associated factor PAF67 | chr5:8965515-8967460 REVERSE LENGTH=514;; (*ITAG) Solyc08g068340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54646333-54651826 transcript_region:SL2.40ch08:54646333..54651826- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 6-interacting protein (AHRD V1 ***- B6SYA1_MAIZE); contains Interpro domain(s) IPR019382 RNA polymerase I-associated factor PAF67 "; GO:0005515 NbS00028803g0009.1 protein AED:0.05 eAED:0.05 QI:104|0|0.5|1|0|0.5|2|0|346; (*GB) gi|356534929|ref|XP_003536003.1| (e_value=2e-94) PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=3e-90) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=3e-91) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc01g100210.2.1 (e_value=2e-133) genomic_reference:SL2.40ch01 gene_region:82026124-82027926 transcript_region:SL2.40ch01:82026124..82027926- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 *-*- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00028803g0008.1 protein AED:0.07 eAED:0.07 QI:134|1|1|1|1|1|3|123|151; (*GB) gi|225450647|ref|XP_002278369.1| (e_value=7e-23) PREDICTED: GATA transcription factor 16-like [Vitis vinifera];; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=1e-15) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=8e-17) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc01g100220.2.1 (e_value=1e-39) genomic_reference:SL2.40ch01 gene_region:82030138-82031017 transcript_region:SL2.40ch01:82030138..82031017- go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00028803g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|98 NbS00022500g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.88|0.7|1|0.77|0.8|10|345|423; (*GB) gi|359480135|ref|XP_002268595.2| (e_value=1e-104) PREDICTED: uncharacterized protein LOC100261941 [Vitis vinifera];; (*TAIR) AT4G13150.1 (e_value=2e-95) | Symbols: | unknown protein; Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:7650326-7652237 REVERSE LENGTH=347;; (*ITAG) Solyc09g060100.2.1 (e_value=4e-163) genomic_reference:SL2.40ch09 gene_region:53199293-53204655 transcript_region:SL2.40ch09:53199293..53204655+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022500g0006.1 protein AED:0.08 eAED:0.08 QI:245|1|1|1|0.93|0.87|16|256|904; (*GB) gi|359480130|ref|XP_002268160.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740-like [Vitis vinifera];; (*SWP) sp|C0LGV0|Y5487_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1;; (*TAIR) AT5G48740.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:19765324-19769314 REVERSE LENGTH=895;; (*ITAG) Solyc09g060110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53204483-53209344 transcript_region:SL2.40ch09:53204483..53209344- go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00016555g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|77 NbS00034489g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|107; (*ITAG) Solyc07g063910.2.1 (e_value=3e-36) genomic_reference:SL2.40ch07 gene_region:63472884-63473581 transcript_region:SL2.40ch07:63472884..63473581+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034489g0005.1 protein AED:0.15 eAED:0.15 QI:223|1|1|1|1|1|2|211|538; (*GB) gi|225461181|ref|XP_002280309.1| (e_value=0.0) PREDICTED: organic cation transporter protein-like [Vitis vinifera];; (*SWP) sp|Q9LHQ6|OCT4_ARATH (e_value=0.0) Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1;; (*TAIR) AT3G20660.1 (e_value=0.0) | Symbols: AtOCT4, 4-Oct | organic cation/carnitine transporter4 | chr3:7225271-7228510 REVERSE LENGTH=526;; (*ITAG) Solyc07g063920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63479200-63481729 transcript_region:SL2.40ch07:63479200..63481729+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 6 (AHRD V1 ***- B5X2P9_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00026634g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|225436011|ref|XP_002273485.1| (e_value=3e-74) PREDICTED: uncharacterized protein LOC100242686 [Vitis vinifera];; (*TAIR) AT2G27080.2 (e_value=2e-65) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260;; (*ITAG) Solyc01g009160.2.1 (e_value=4e-110) genomic_reference:SL2.40ch01 gene_region:3172415-3173564 transcript_region:SL2.40ch01:3172415..3173564- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00021564g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|237; (*GB) gi|255557579|ref|XP_002519819.1| (e_value=1e-86) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O49686|PYR1_ARATH (e_value=4e-74) Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1;; (*TAIR) AT4G17870.1 (e_value=3e-75) | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191;; (*ITAG) Solyc08g076960.1.1 (e_value=3e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:58068066-58068761 transcript_region:SL2.40ch08:58068066..58068761- go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYR1 (AHRD V1 **-- PYR1_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00005909g0006.1 protein AED:0.10 eAED:0.10 QI:9|0.8|0.5|1|0.6|0.5|6|0|381; (*GB) gi|10185719|gb|AAG14416.1|AF248538_1 (e_value=0.0) NTS1 protein [Nicotiana tabacum];; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=3e-98) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT1G02790.1 (e_value=1e-97) | Symbols: PGA4 | polygalacturonase 4 | chr1:610681-612225 REVERSE LENGTH=422;; (*ITAG) Solyc06g009200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3145403-3148220 transcript_region:SL2.40ch06:3145403..3148220+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00001204g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|0|268; (*GB) gi|678547|gb|AAA65637.1| (e_value=3e-142) peroxidase [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=1e-119) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=1e-120) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=3e-154) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00001204g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0.5|1|0|0|2|0|92; (*GB) gi|359485668|ref|XP_002274157.2| (e_value=1e-25) PREDICTED: peroxidase 27-like [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=4e-26) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=3e-27) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc12g005790.1.1 (e_value=1e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:440801-442920 transcript_region:SL2.40ch12:440801..442920- go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00025035g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0.85|0.75|8|0|1033; (*GB) gi|359477550|ref|XP_003631994.1| (e_value=1e-159) PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera];; (*TAIR) AT1G03080.1 (e_value=4e-108) | Symbols: | kinase interacting (KIP1-like) family protein | chr1:731794-737332 REVERSE LENGTH=1733;; (*ITAG) Solyc10g045290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28102747-28111191 transcript_region:SL2.40ch10:28102747..28111191+ functional_description:"Kinase interacting family protein (AHRD V1 **-- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00022211g0003.1 protein AED:0.32 eAED:0.32 QI:185|0.87|0.66|0.88|0.5|0.44|9|0|283; (*GB) gi|326502868|dbj|BAJ99062.1| (e_value=2e-113) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G63830.3 (e_value=3e-111) | Symbols: | PLAC8 family protein | chr1:23685408-23687098 FORWARD LENGTH=232;; (*ITAG) Solyc10g012080.2.1 (e_value=2e-140) genomic_reference:SL2.40ch10 gene_region:4409840-4412640 transcript_region:SL2.40ch10:4409840..4412640- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00015145g0113.1 protein AED:0.12 eAED:0.12 QI:128|0.91|0.92|1|0.66|0.76|13|330|399 NbS00015145g0115.1 protein AED:0.17 eAED:0.18 QI:0|0.66|0.5|1|0.77|0.8|10|363|772 NbS00015145g0114.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|995 NbS00017280g0005.1 protein AED:0.02 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|174; (*GB) gi|351726052|ref|NP_001238649.1| (e_value=2e-66) uncharacterized protein LOC100500473 [Glycine max];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=1e-33) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G39700.1 (e_value=8e-50) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:18424265-18424906 FORWARD LENGTH=158;; (*ITAG) Solyc05g051820.2.1 (e_value=1e-68) genomic_reference:SL2.40ch05 gene_region:61373808-61375430 transcript_region:SL2.40ch05:61373808..61375430+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00017280g0008.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0.5|0.42|7|0|217; (*ITAG) Solyc05g051830.2.1 (e_value=1e-80) genomic_reference:SL2.40ch05 gene_region:61378235-61384104 transcript_region:SL2.40ch05:61378235..61384104+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00017280g0009.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|0|0|2|0|72; (*GB) gi|222640785|gb|EEE68917.1| (e_value=3e-25) hypothetical protein OsJ_27780 [Oryza sativa Japonica Group];; (*SWP) sp|Q40704|MADS3_ORYSJ (e_value=3e-20) MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1;; (*TAIR) AT1G22130.1 (e_value=1e-23) | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814259 REVERSE LENGTH=335;; (*ITAG) Solyc05g051830.2.1 (e_value=3e-34) genomic_reference:SL2.40ch05 gene_region:61378235-61384104 transcript_region:SL2.40ch05:61378235..61384104+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00054027g0004.1 protein AED:0.08 eAED:0.08 QI:195|1|1|1|0.58|0.76|13|468|481; (*GB) gi|40557601|gb|AAR88094.1| (e_value=0.0) notchless-like protein [Solanum chacoense];; (*SWP) sp|Q9FLX9|NLE1_ARATH (e_value=0.0) Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1;; (*TAIR) AT5G52820.1 (e_value=0.0) | Symbols: | WD-40 repeat family protein / notchless protein, putative | chr5:21401423-21404203 FORWARD LENGTH=473;; (*ITAG) Solyc03g112530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56968670-56976442 transcript_region:SL2.40ch03:56968670..56976442- go_terms:GO:0045505 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 (AHRD V1 **-* GBB3_HUMAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00013225g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.2|1|1|1|5|0|1054; (*GB) gi|357500731|ref|XP_003620654.1| (e_value=0.0) Elongation factor Ts [Medicago truncatula];; (*SWP) sp|A2BW76|EFTS_PROM5 (e_value=6e-87) Elongation factor Ts OS=Prochlorococcus marinus (strain MIT 9515) GN=tsf PE=3 SV=1;; (*TAIR) AT4G29060.1 (e_value=0.0) | Symbols: emb2726 | elongation factor Ts family protein | chr4:14317744-14321315 FORWARD LENGTH=953;; (*ITAG) Solyc07g018360.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:10406673-10413230 transcript_region:SL2.40ch07:10406673..10413230- go_terms:GO:0006508,GO:0003723,GO:0005622 functional_description:"Elongation factor Ts (AHRD V1 ***- Q9SZD6_ARATH); contains Interpro domain(s) IPR014039 Translation elongation factor EFTs/EF1B, dimerisation "; GO:0006508,GO:0003723,GO:0005622 NbS00019671g0004.1 protein AED:0.16 eAED:0.27 QI:85|0.33|0.14|1|0.5|0.42|7|0|628; (*GB) gi|147783377|emb|CAN59886.1| (e_value=0.0) hypothetical protein VITISV_026168 [Vitis vinifera];; (*SWP) sp|Q9WTK3|GPAA1_MOUSE (e_value=4e-26) Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3;; (*TAIR) AT5G19130.2 (e_value=0.0) | Symbols: | GPI transamidase component family protein / Gaa1-like family protein | chr5:6416128-6418993 REVERSE LENGTH=696;; (*ITAG) Solyc02g067820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32512237-32517042 transcript_region:SL2.40ch02:32512237..32517042- go_terms:GO:0003923 functional_description:"GPI transamidase component GAA1 (AHRD V1 *--* C9SRB1_VERA1); contains Interpro domain(s) IPR017063 Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component "; GO:0003923 NbS00002995g0006.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.5|0|0|2|0|192; (*GB) gi|224139814|ref|XP_002323289.1| (e_value=8e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06790.1 (e_value=4e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:2098088-2098717 REVERSE LENGTH=209;; (*ITAG) Solyc03g063550.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:32246581-32247045 transcript_region:SL2.40ch03:32246581..32247045+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011127g0001.1 protein AED:0.30 eAED:0.32 QI:1986|0|0.66|0.66|1|1|3|167|164 NbS00011127g0002.1 protein AED:0.45 eAED:0.51 QI:393|0.55|0.5|0.9|1|1|10|0|256; (*GB) gi|225426218|ref|XP_002263667.1| (e_value=2e-110) PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera];; (*TAIR) AT1G64600.1 (e_value=6e-86) | Symbols: | methyltransferases;copper ion binding | chr1:23995996-23998625 FORWARD LENGTH=537;; (*ITAG) Solyc08g082880.2.1 (e_value=9e-132) genomic_reference:SL2.40ch08 gene_region:62705443-62710758 transcript_region:SL2.40ch08:62705443..62710758+ go_terms:GO:0006412,GO:0005507 functional_description:"Ribosomal small subunit Rsm22 (AHRD V1 *-*- D9TLZ5_CLOTS); contains Interpro domain(s) IPR015324 Ribosomal protein Rsm22, bacterial-type "; GO:0006412,GO:0005507 NbS00011127g0009.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|1|1|2|0|205; (*GB) gi|296090345|emb|CBI40164.3| (e_value=4e-21) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=2e-12) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=2e-13) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc07g047640.2.1 (e_value=4e-14) genomic_reference:SL2.40ch07 gene_region:56198167-56199461 transcript_region:SL2.40ch07:56198167..56199461- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00011127g0006.1 protein AED:0.41 eAED:0.56 QI:0|0|0.33|1|1|1|3|60|97 NbS00015969g0002.1 protein AED:0.18 eAED:0.18 QI:201|0.71|0.75|1|1|1|8|0|442; (*GB) gi|175363751|gb|ACB72462.1| (e_value=0.0) elongation factor 1 gamma-like protein [Nicotiana tabacum];; (*SWP) sp|Q6YW46|EF1G2_ORYSJ (e_value=0.0) Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2;; (*TAIR) AT1G09640.1 (e_value=0.0) | Symbols: | Translation elongation factor EF1B, gamma chain | chr1:3120162-3122152 FORWARD LENGTH=414;; (*ITAG) Solyc11g028100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:16767881-16769971 transcript_region:SL2.40ch11:16767881..16769971+ go_terms:GO:0005853 functional_description:"Elongation factor 1-gamma (AHRD V1 ***- B7SDI2_ORYSJ); contains Interpro domain(s) IPR001662 Translation elongation factor EF1B, gamma chain, conserved "; GO:0005853 NbS00038647g0016.1 protein AED:0.26 eAED:0.26 QI:450|0.75|0.4|1|0.75|1|5|219|72 NbS00006586g0004.1 protein AED:0.29 eAED:0.29 QI:262|1|0.85|1|0.76|0.78|14|0|518; (*GB) gi|255586071|ref|XP_002533700.1| (e_value=0.0) amsh, putative [Ricinus communis];; (*SWP) sp|Q8VYB5|AMSH1_ARATH (e_value=0.0) AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1;; (*TAIR) AT1G48790.1 (e_value=0.0) | Symbols: AMSH1 | associated molecule with the SH3 domain of STAM 1 | chr1:18043925-18047427 REVERSE LENGTH=507;; (*ITAG) Solyc03g119330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62024109-62031646 transcript_region:SL2.40ch03:62024109..62031646- functional_description:"26S proteasome regulatory subunit (AHRD V1 *--- A7EKH5_SCLS1); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00019013g0004.1 protein AED:0.27 eAED:0.34 QI:13|0.66|0.57|1|0.83|0.71|7|0|189; (*GB) gi|224060236|ref|XP_002300099.1| (e_value=7e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE42|RPE1_ORYSJ (e_value=1e-103) Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1;; (*TAIR) AT3G01850.2 (e_value=7e-99) | Symbols: | Aldolase-type TIM barrel family protein | chr3:300428-301987 REVERSE LENGTH=225;; (*ITAG) Solyc05g007260.2.1 (e_value=3e-113) genomic_reference:SL2.40ch05 gene_region:1925294-1928969 transcript_region:SL2.40ch05:1925294..1928969- go_terms:GO:0005515,GO:0004750 functional_description:"Ribulose-phosphate 3-epimerase (AHRD V1 **** C1E4B2_9CHLO); contains Interpro domain(s) IPR000056 Ribulose-phosphate 3-epimerase "; GO:0005515,GO:0004750 NbS00011505g0006.1 protein AED:0.25 eAED:0.25 QI:209|1|1|1|0.8|0.83|6|347|183; (*GB) gi|225450529|ref|XP_002281419.1| (e_value=8e-114) PREDICTED: protein ECHIDNA [Vitis vinifera];; (*SWP) sp|Q8LEK2|FA18_ARATH (e_value=3e-103) Protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=2 SV=1;; (*TAIR) AT1G09330.1 (e_value=2e-104) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | chr1:3013003-3014903 REVERSE LENGTH=186;; (*ITAG) Solyc06g073270.2.1 (e_value=6e-132) genomic_reference:SL2.40ch06 gene_region:41534966-41538784 transcript_region:SL2.40ch06:41534966..41538784- go_terms:GO:0005515 functional_description:"Golgi apparatus membrane protein tvp23 (AHRD V1 **-- C5JI99_AJEDS); contains Interpro domain(s) IPR008564 Protein of unknown function DUF846, eukaryotic "; GO:0005515 NbS00031602g0008.1 protein AED:0.03 eAED:0.03 QI:265|1|1|1|1|1|2|369|431; (*GB) gi|15230825|ref|NP_189162.1| (e_value=4e-147) serine/threonine-protein kinase OXI1 [Arabidopsis thaliana];; (*SWP) sp|Q9LSF1|OXI1_ARATH (e_value=1e-148) Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1;; (*TAIR) AT3G25250.1 (e_value=9e-150) | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr3:9195566-9196949 FORWARD LENGTH=421;; (*ITAG) Solyc09g056430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:44700279-44701562 transcript_region:SL2.40ch09:44700279..44701562- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MVG5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00031602g0009.1 protein AED:0.30 eAED:0.44 QI:0|0.25|0.4|0.8|0.75|0.8|5|0|115; (*GB) gi|359497272|ref|XP_003635468.1| (e_value=4e-29) PREDICTED: uncharacterized protein LOC100852448, partial [Vitis vinifera];; (*TAIR) AT5G48545.1 (e_value=2e-22) | Symbols: HINT3 | histidine triad nucleotide-binding 3 | chr5:19676228-19677945 FORWARD LENGTH=197;; (*ITAG) Solyc06g007590.2.1 (e_value=3e-31) genomic_reference:SL2.40ch06 gene_region:1584515-1597766 transcript_region:SL2.40ch06:1584515..1597766- go_terms:GO:0043530 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B9LF38_CHLSY); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0043530 NbS00031602g0006.1 protein AED:0.63 eAED:0.65 QI:0|0.33|0.25|0.75|1|1|4|0|62; (*TAIR) AT5G48545.1 (e_value=3e-14) | Symbols: HINT3 | histidine triad nucleotide-binding 3 | chr5:19676228-19677945 FORWARD LENGTH=197;; (*ITAG) Solyc06g007590.2.1 (e_value=4e-14) genomic_reference:SL2.40ch06 gene_region:1584515-1597766 transcript_region:SL2.40ch06:1584515..1597766- go_terms:GO:0043530 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B9LF38_CHLSY); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0043530 NbS00003135g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|399; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=3e-62) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=6e-29) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=4e-30) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019308g0010.1 protein AED:0.15 eAED:0.15 QI:354|0.63|0.66|0.91|0.72|0.75|12|727|1354; (*GB) gi|255586318|ref|XP_002533810.1| (e_value=0.0) nuclear receptor binding set domain containing protein 1, nsd, putative [Ricinus communis];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT3G51120.1 (e_value=0.0) | Symbols: | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292;; (*ITAG) Solyc02g062360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28550320-28558544 transcript_region:SL2.40ch02:28550320..28558544+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase NSD3 (AHRD V1 *--- NSD3_HUMAN); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00019308g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|363; (*GB) gi|296082490|emb|CBI21495.3| (e_value=1e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G07900.1 (e_value=3e-50) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc12g010650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00019308g0009.1 protein AED:0.09 eAED:0.09 QI:344|1|1|1|1|1|2|267|134 NbS00019308g0011.1 protein AED:0.14 eAED:0.14 QI:222|0.5|0.33|0.66|0|0.33|3|0|155; (*GB) gi|225431279|ref|XP_002275676.1| (e_value=2e-59) PREDICTED: uncharacterized protein LOC100267751 [Vitis vinifera];; (*TAIR) AT5G49410.2 (e_value=4e-61) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20032901-20033751 FORWARD LENGTH=145;; (*ITAG) Solyc02g062530.2.1 (e_value=4e-71) genomic_reference:SL2.40ch02 gene_region:28798345-28800697 transcript_region:SL2.40ch02:28798345..28800697- functional_description:"Os03g0852500 protein (Fragment) (AHRD V1 ***- Q0DLQ0_ORYSJ)"; NbS00036424g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.71|0.33|0.42|7|0|491; (*GB) gi|225440783|ref|XP_002275884.1| (e_value=9e-170) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=4e-134) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=3e-135) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbC24568014g0003.1 protein AED:0.14 eAED:0.25 QI:39|0|0|1|1|1|2|0|100; (*ITAG) Solyc06g082770.2.1 (e_value=2e-30) genomic_reference:SL2.40ch06 gene_region:44749200-44750786 transcript_region:SL2.40ch06:44749200..44750786+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00000503g0002.1 protein AED:0.08 eAED:0.08 QI:241|1|1|1|0.5|0.6|5|338|569; (*GB) gi|225427896|ref|XP_002276670.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253759 [Vitis vinifera];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc01g111100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00004003g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|312271200|gb|ADQ57297.1| (e_value=1e-57) xylem sap protein 10 kDa [Solanum lycopersicum];; (*TAIR) AT5G05960.1 (e_value=3e-46) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:1790256-1790694 FORWARD LENGTH=116;; (*ITAG) Solyc03g079880.2.1 (e_value=3e-61) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00004003g0002.1 protein AED:0.10 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|284; (*GB) gi|297806613|ref|XP_002871190.1| (e_value=1e-58) hypothetical protein ARALYDRAFT_487395 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G05950.1 (e_value=9e-61) | Symbols: MEE60 | maternal effect embryo arrest 60 | chr5:1788814-1789341 FORWARD LENGTH=175;; (*ITAG) Solyc05g052990.2.1 (e_value=4e-102) genomic_reference:SL2.40ch05 gene_region:62307108-62308712 transcript_region:SL2.40ch05:62307108..62308712+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006128g0006.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|54261828|gb|AAV31178.1| (e_value=4e-19) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc12g014510.1.1 (e_value=7e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5485767-5488524 transcript_region:SL2.40ch12:5485767..5488524+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00006128g0007.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|0|0|3|0|85 NbS00009171g0023.1 protein AED:0.11 eAED:0.11 QI:0|0.88|0.78|1|0.94|0.84|19|0|1450; (*GB) gi|255545554|ref|XP_002513837.1| (e_value=0.0) phd finger protein, putative [Ricinus communis];; (*SWP) sp|Q803A0|JADE1_DANRE (e_value=2e-33) Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1;; (*TAIR) AT1G77800.1 (e_value=1e-149) | Symbols: | PHD finger family protein | chr1:29253800-29260190 FORWARD LENGTH=1375;; (*ITAG) Solyc11g013530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6608300-6627616 transcript_region:SL2.40ch11:6608300..6627616+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7KUM9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00009171g0025.1 protein AED:0.34 eAED:0.34 QI:0|0.83|0.71|1|0.83|0.85|7|25|277; (*GB) gi|33667912|gb|AAQ24535.1| (e_value=0.0) MYST-type acetyltransferase [Solanum chacoense];; (*SWP) sp|Q9FLF7|MYST1_ARATH (e_value=0.0) Probable MYST-like histone acetyltransferase 1 OS=Arabidopsis thaliana GN=HAG4 PE=2 SV=1;; (*TAIR) AT5G64610.1 (e_value=0.0) | Symbols: HAM1 | histone acetyltransferase of the MYST family 1 | chr5:25828333-25830503 REVERSE LENGTH=445;; (*ITAG) Solyc11g013520.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6585029-6595031 transcript_region:SL2.40ch11:6585029..6595031- go_terms:GO:0046972 functional_description:"Histone acetyltransferase (AHRD V1 **** B9H794_POPTR); contains Interpro domain(s) IPR002717 MOZ/SAS-like protein "; GO:0046972 NbS00009171g0024.1 protein AED:0.14 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|143 NbS00037311g0002.1 protein AED:0.18 eAED:0.18 QI:1122|1|1|1|0.16|0.28|7|1218|101; (*GB) gi|356521899|ref|XP_003529588.1| (e_value=2e-39) PREDICTED: putative chromatin-remodeling complex ATPase chain-like [Glycine max];; (*SWP) sp|Q8RWY3|ISW2_ARATH (e_value=4e-38) Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3;; (*TAIR) AT5G18620.2 (e_value=1e-39) | Symbols: CHR17 | chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1072;; (*ITAG) Solyc06g054560.2.1 (e_value=1e-41) genomic_reference:SL2.40ch06 gene_region:33791637-33800988 transcript_region:SL2.40ch06:33791637..33800988+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00015260g0008.1 protein AED:0.17 eAED:0.19 QI:0|0.83|0.84|1|0.66|0.76|13|241|292; (*GB) gi|312281791|dbj|BAJ33761.1| (e_value=2e-155) unnamed protein product [Thellungiella halophila];; (*SWP) sp|P75713|YLBA_ECOLI (e_value=3e-23) Uncharacterized protein ylbA OS=Escherichia coli (strain K12) GN=ylbA PE=1 SV=1;; (*TAIR) AT4G17050.1 (e_value=2e-157) | Symbols: UGLYAH | ureidoglycine aminohydrolase | chr4:9589662-9592413 FORWARD LENGTH=298;; (*ITAG) Solyc08g077840.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58907756-58913287 transcript_region:SL2.40ch08:58907756..58913287- go_terms:GO:0003700 functional_description:"Cupin 2 conserved barrel domain protein (AHRD V1 **-- D7BFW1_MEISD); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0003700 NbS00015260g0002.1 protein AED:0.12 eAED:0.12 QI:411|1|0.5|1|0|0|2|0|379; (*GB) gi|225437840|ref|XP_002263238.1| (e_value=2e-140) PREDICTED: deoxyhypusine hydroxylase [Vitis vinifera];; (*SWP) sp|Q94JW0|DOHH_ARATH (e_value=6e-136) Deoxyhypusine hydroxylase OS=Arabidopsis thaliana GN=At3g58180 PE=2 SV=1;; (*TAIR) AT3G58180.1 (e_value=4e-137) | Symbols: | ARM repeat superfamily protein | chr3:21544189-21545981 FORWARD LENGTH=314;; (*ITAG) Solyc08g077830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58906173-58907177 transcript_region:SL2.40ch08:58906173..58907177+ go_terms:GO:0005515,GO:0019135 functional_description:"Deoxyhypusine hydroxylase (AHRD V1 **** D8THC0_VOLCA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0019135 NbS00038930g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0.5|0.66|3|0|341; (*GB) gi|255571025|ref|XP_002526463.1| (e_value=1e-85) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=1e-30) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1;; (*TAIR) AT2G44800.1 (e_value=4e-85) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:18467004-18468551 FORWARD LENGTH=357;; (*ITAG) Solyc11g007890.1.1 (e_value=7e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2114654-2117507 transcript_region:SL2.40ch11:2114654..2117507+ go_terms:GO:0016491,GO:0055114 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 4 (AHRD V1 **-- ACCO4_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00025360g0007.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|0|0.16|6|0|584; (*GB) gi|255580797|ref|XP_002531219.1| (e_value=1e-140) histone-lysine n-methyltransferase, suvh, putative [Ricinus communis];; (*SWP) sp|O82175|SUVH5_ARATH (e_value=7e-115) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1;; (*TAIR) AT2G35160.1 (e_value=5e-116) | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14823562-14825946 FORWARD LENGTH=794;; (*ITAG) Solyc03g093710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48793047-48795563 transcript_region:SL2.40ch03:48793047..48795563- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00025360g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|257; (*GB) gi|344227185|gb|AEN03272.1| (e_value=2e-154) methionine sulfoxide reductase A4 [Solanum lycopersicum];; (*SWP) sp|Q9SEC2|MSRA_LACSA (e_value=3e-131) Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1;; (*TAIR) AT4G25130.1 (e_value=1e-123) | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898802-12899998 REVERSE LENGTH=258;; (*ITAG) Solyc03g093690.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:48771078-48774007 transcript_region:SL2.40ch03:48771078..48774007+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D2B4D8_STRRD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00026546g0012.1 protein AED:0.08 eAED:0.08 QI:250|0.87|0.66|1|1|1|9|0|1307; (*GB) gi|225447584|ref|XP_002272021.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249432 isoform 1 [Vitis vinifera];; (*TAIR) AT2G05120.1 (e_value=0.0) | Symbols: | Nucleoporin, Nup133/Nup155-like | chr2:1842069-1846858 REVERSE LENGTH=1285;; (*ITAG) Solyc07g047860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56407270-56414654 transcript_region:SL2.40ch07:56407270..56414654- go_terms:GO:0005515 functional_description:"Nup133 nucleoporin family protein expressed (AHRD V1 **-- Q10PQ6_ORYSJ); contains Interpro domain(s) IPR014908 Nup133, N-terminal "; GO:0005515 NbS00026546g0005.1 protein AED:0.15 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|102 NbS00026546g0013.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.6|0.25|0.4|5|0|221; (*ITAG) Solyc07g017550.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:7499331-7505359 transcript_region:SL2.40ch07:7499331..7505359+ go_terms:GO:0006468,GO:0008270 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468,GO:0008270 NbS00001203g0002.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|1042; (*GB) gi|39577522|gb|AAR28378.1| (e_value=0.0) EIX receptor 2 [Solanum lycopersicum];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=7e-52) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT2G34930.1 (e_value=5e-102) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001203g0010.1 protein AED:0.11 eAED:0.11 QI:206|1|1|1|0.66|0.71|7|640|139; (*GB) gi|224087290|ref|XP_002308113.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5E9J7|ADAT2_BOVIN (e_value=3e-33) tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1;; (*TAIR) AT1G48175.1 (e_value=2e-59) | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase family protein | chr1:17790957-17792066 FORWARD LENGTH=182;; (*ITAG) Solyc07g008650.2.1 (e_value=5e-82) genomic_reference:SL2.40ch07 gene_region:3585311-3592520 transcript_region:SL2.40ch07:3585311..3592520+ go_terms:GO:0008251 functional_description:"tRNA-specific adenosine deaminase (AHRD V1 **** B6T9V4_MAIZE); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0008251 NbS00001203g0103.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|163 NbS00001203g0117.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|0.6|0.66|6|764|219 NbS00001203g0118.1 protein AED:0.15 eAED:0.15 QI:0|0.87|0.77|0.88|0.75|0.66|9|268|303 NbS00001203g0113.1 protein AED:0.17 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|545 NbC26332048g0002.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.75|1|1|4|0|177 NbS00018488g0016.1 protein AED:0.23 eAED:0.23 QI:10|1|0.92|1|1|1|13|489|373; (*GB) gi|225461191|ref|XP_002283163.1| (e_value=0.0) PREDICTED: mRNA cap guanine-N7 methyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9LHQ7|MCES1_ARATH (e_value=0.0) mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1;; (*TAIR) AT3G20650.1 (e_value=0.0) | Symbols: | mRNA capping enzyme family protein | chr3:7221168-7223939 REVERSE LENGTH=370;; (*ITAG) Solyc03g118250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61217203-61222782 transcript_region:SL2.40ch03:61217203..61222782- go_terms:GO:0004482 functional_description:"mRNA cap guanine-N7 methyltransferase (AHRD V1 **** B9SQY3_RICCO); contains Interpro domain(s) IPR016899 mRNA (guanine-N(7))-methyltransferase "; GO:0004482 NbS00018488g0019.1 protein AED:0.25 eAED:0.26 QI:0|0.84|0.92|1|1|1|14|547|508; (*GB) gi|224087748|ref|XP_002308217.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M028|LMBD2_ARATH (e_value=0.0) LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1;; (*TAIR) AT5G01460.1 (e_value=0.0) | Symbols: | LMBR1-like membrane protein | chr5:186823-190008 FORWARD LENGTH=509;; (*ITAG) Solyc09g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:233708-240148 transcript_region:SL2.40ch09:233708..240148- functional_description:"LIMR family protein At5g01460 (AHRD V1 ***- LMBD2_ARATH); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00018488g0017.1 protein AED:0.07 eAED:0.07 QI:208|1|1|1|0|0.25|4|283|180; (*GB) gi|357113946|ref|XP_003558762.1| (e_value=4e-43) PREDICTED: GDSL esterase/lipase CPRD49-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|Q9SRM5|CPR49_ARATH (e_value=4e-35) GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1;; (*TAIR) AT3G11210.1 (e_value=3e-36) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256;; (*ITAG) Solyc10g076740.1.1 (e_value=1e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59007942-59010862 transcript_region:SL2.40ch10:59007942..59010862- go_terms:GO:0006629,GO:0016787 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6T5T9_MAIZE); contains Interpro domain(s) IPR013831 Esterase, SGNH hydrolase-type, subgroup "; GO:0006629,GO:0016787 NbS00018488g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|5|0|655; (*GB) gi|359482798|ref|XP_002268266.2| (e_value=3e-141) PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera];; (*SWP) sp|Q7XA42|RGA1_SOLBU (e_value=5e-97) Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=3e-45) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc09g005290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:220544-223354 transcript_region:SL2.40ch09:220544..223354+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013608g0007.1 protein AED:0.29 eAED:0.29 QI:196|1|0.8|1|0.75|0.6|5|0|311; (*GB) gi|295824575|gb|ADG37658.1| (e_value=0.0) DUF300 family protein [Nicotiana tabacum];; (*SWP) sp|Q9NVA4|T184C_HUMAN (e_value=5e-41) Transmembrane protein 184C OS=Homo sapiens GN=TMEM184C PE=2 SV=2;; (*TAIR) AT4G21570.1 (e_value=2e-143) | Symbols: | Protein of unknown function (DUF300) | chr4:11471126-11472269 REVERSE LENGTH=294;; (*ITAG) Solyc07g063520.2.1 (e_value=4e-180) genomic_reference:SL2.40ch07 gene_region:63209581-63212096 transcript_region:SL2.40ch07:63209581..63212096+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00015148g0006.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|230; (*GB) gi|30524691|emb|CAC85247.1| (e_value=9e-78) salt tolerance protein 5 [Beta vulgaris];; (*SWP) sp|Q5ZIN1|NUDC_CHICK (e_value=1e-48) Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1;; (*TAIR) AT4G27890.1 (e_value=5e-78) | Symbols: | HSP20-like chaperones superfamily protein | chr4:13886033-13887220 FORWARD LENGTH=293;; (*ITAG) Solyc02g062410.1.1 (e_value=6e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28585511-28586459 transcript_region:SL2.40ch02:28585511..28586459- go_terms:GO:0051082,GO:0042802 functional_description:"Nuclear movement protein nudc (AHRD V1 ***- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; GO:0051082,GO:0042802 NbS00015148g0008.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|30524691|emb|CAC85247.1| (e_value=2e-54) salt tolerance protein 5 [Beta vulgaris];; (*SWP) sp|Q5ZIN1|NUDC_CHICK (e_value=9e-34) Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1;; (*TAIR) AT5G53400.1 (e_value=2e-49) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc09g092210.2.1 (e_value=5e-95) genomic_reference:SL2.40ch09 gene_region:66700581-66705403 transcript_region:SL2.40ch09:66700581..66705403+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00024253g0011.1 protein AED:0.19 eAED:0.19 QI:247|1|0.95|1|0.94|0.9|20|0|700; (*GB) gi|225454296|ref|XP_002275449.1| (e_value=0.0) PREDICTED: exocyst complex component 5 [Vitis vinifera];; (*SWP) sp|Q8RVQ5|EXOC5_ARATH (e_value=0.0) Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2;; (*TAIR) AT5G12370.2 (e_value=0.0) | Symbols: SEC10 | exocyst complex component sec10 | chr5:4003002-4008445 REVERSE LENGTH=825;; (*ITAG) Solyc03g095410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49957019-49986156 transcript_region:SL2.40ch03:49957019..49986156+ go_terms:GO:0005737 functional_description:"Exocyst complex component protein (AHRD V1 ***- A8NX01_COPC7); contains Interpro domain(s) IPR009976 Exocyst complex component Sec10 "; GO:0005737 NbS00024253g0009.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|86; (*GB) gi|224127760|ref|XP_002320157.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2QV94|EXOC5_ORYSJ (e_value=1e-32) Exocyst complex component 5 OS=Oryza sativa subsp. japonica GN=SEC10 PE=2 SV=1;; (*TAIR) AT5G12370.3 (e_value=7e-29) | Symbols: SEC10 | exocyst complex component sec10 | chr5:4003002-4008445 REVERSE LENGTH=820;; (*ITAG) Solyc03g095410.2.1 (e_value=3e-37) genomic_reference:SL2.40ch03 gene_region:49957019-49986156 transcript_region:SL2.40ch03:49957019..49986156+ go_terms:GO:0005737 functional_description:"Exocyst complex component protein (AHRD V1 ***- A8NX01_COPC7); contains Interpro domain(s) IPR009976 Exocyst complex component Sec10 "; GO:0005737 NbS00024253g0010.1 protein AED:0.22 eAED:0.22 QI:315|0.8|0.83|1|0.8|0.83|6|320|336; (*GB) gi|296085831|emb|CBI31155.3| (e_value=3e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96EX2|RNFT2_HUMAN (e_value=3e-21) RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2;; (*TAIR) AT5G01960.1 (e_value=2e-67) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc03g095450.2.1 (e_value=1e-102) genomic_reference:SL2.40ch03 gene_region:50014714-50023523 transcript_region:SL2.40ch03:50014714..50023523- go_terms:GO:0008270 functional_description:"RING finger protein 141 (AHRD V1 *--- RN141_CANFA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00045340g0004.1 protein AED:0.36 eAED:0.38 QI:108|0.90|0.83|1|1|0.91|12|0|356; (*GB) gi|224061605|ref|XP_002300563.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5U8|HISX_ARATH (e_value=0.0) Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HDH PE=2 SV=1;; (*TAIR) AT5G63890.1 (e_value=0.0) | Symbols: ATHDH, HISN8, HDH | histidinol dehydrogenase | chr5:25565600-25567879 REVERSE LENGTH=452;; (*ITAG) Solyc02g071890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35843032-35848958 transcript_region:SL2.40ch02:35843032..35848958+ go_terms:GO:0004399 functional_description:"Histidinol dehydrogenase (AHRD V1 **** B9GH07_POPTR); contains Interpro domain(s) IPR012131 Histidinol dehydrogenase, prokaryotic-type "; GO:0004399 NbS00035191g0005.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0.8|0.83|6|0|747; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=1e-13) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT5G42940.1 (e_value=2e-85) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc12g088740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62436390-62439783 transcript_region:SL2.40ch12:62436390..62439783+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019429g0005.1 protein AED:0.18 eAED:0.18 QI:866|1|1|1|0.14|0.26|15|1168|149; (*GB) gi|255557403|ref|XP_002519732.1| (e_value=1e-68) O-acetyltransferase, putative [Ricinus communis];; (*SWP) sp|Q7TN73|CASD1_MOUSE (e_value=8e-24) CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1;; (*TAIR) AT5G46340.1 (e_value=3e-70) | Symbols: | O-acetyltransferase family protein | chr5:18796361-18799725 REVERSE LENGTH=540;; (*ITAG) Solyc03g005830.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:562424-569540 transcript_region:SL2.40ch03:562424..569540- go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00037461g0009.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0.33|3|0|141; (*GB) gi|113205261|gb|ABI34316.1| (e_value=2e-35) S haplotype-specific F-box protein, putative [Solanum demissum];; (*ITAG) Solyc05g007530.1.1 (e_value=6e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2085583-2086701 transcript_region:SL2.40ch05:2085583..2086701- functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR006527 F-box associated "; NbS00037461g0008.1 protein AED:0.45 eAED:0.56 QI:0|0|0|1|0|0.5|2|0|110 NbS00037461g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.87|0.77|9|328|299; (*GB) gi|142942404|gb|ABO92979.1| (e_value=1e-166) putative CAAX amino terminal protease [Solanum tuberosum];; (*TAIR) AT1G14270.1 (e_value=2e-98) | Symbols: | CAAX amino terminal protease family protein | chr1:4875099-4877195 REVERSE LENGTH=353;; (*ITAG) Solyc05g007500.2.1 (e_value=4e-166) genomic_reference:SL2.40ch05 gene_region:2058219-2062067 transcript_region:SL2.40ch05:2058219..2062067+ go_terms:GO:0016020 functional_description:"CAAX amino terminal protease family protein (AHRD V1 ***- B6T405_MAIZE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00037461g0007.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0|4|0|448; (*GB) gi|47824946|gb|AAT38720.1| (e_value=1e-174) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=1e-32) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=1e-33) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc07g052580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58385492-58387399 transcript_region:SL2.40ch07:58385492..58387399- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00021841g0008.1 protein AED:0.29 eAED:0.31 QI:273|0.66|0.57|1|0.66|0.71|7|683|641; (*GB) gi|225458772|ref|XP_002285122.1| (e_value=0.0) PREDICTED: metal transporter Nramp2-like [Vitis vinifera];; (*SWP) sp|Q9C6B2|NRAM2_ARATH (e_value=0.0) Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1;; (*TAIR) AT1G47240.1 (e_value=0.0) | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion transporter 2 | chr1:17309043-17311308 REVERSE LENGTH=530;; (*ITAG) Solyc04g078250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60616806-60621171 transcript_region:SL2.40ch04:60616806..60621171- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00017747g0001.1 protein AED:0.16 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|131; (*ITAG) Solyc11g039450.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23726518-23727177 transcript_region:SL2.40ch11:23726518..23727177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047308g0006.1 protein AED:0.10 eAED:0.10 QI:214|0.77|0.9|0.9|1|1|10|433|517; (*GB) gi|283837095|emb|CBH19892.1| (e_value=0.0) cell cycle switch 52B [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8LPL5|FZR3_ARATH (e_value=0.0) Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1;; (*TAIR) AT5G13840.2 (e_value=0.0) | Symbols: FZR3 | FIZZY-related 3 | chr5:4468677-4470706 REVERSE LENGTH=481;; (*ITAG) Solyc06g043150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:26107234-26109682 transcript_region:SL2.40ch06:26107234..26109682- go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q6T2Z5_SOYBN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00009729g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|126; (*GB) gi|225431343|ref|XP_002278070.1| (e_value=1e-60) PREDICTED: uncharacterized protein At4g08330, chloroplastic [Vitis vinifera];; (*TAIR) AT2G17705.1 (e_value=3e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:7692506-7692889 FORWARD LENGTH=127;; (*ITAG) Solyc02g083360.1.1 (e_value=1e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41381309-41381689 transcript_region:SL2.40ch02:41381309..41381689+ functional_description:"Protein-methionine-s-oxide reductase (AHRD V1 **-- D7L9H5_ARALY)"; NbS00029137g0001.1 protein AED:0.35 eAED:0.35 QI:0|1|0.33|1|1|1|3|0|259; (*GB) gi|350538315|ref|NP_001234081.1| (e_value=4e-171) expansin A4 precursor [Solanum lycopersicum];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=4e-153) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=3e-154) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc09g010860.2.1 (e_value=7e-174) genomic_reference:SL2.40ch09 gene_region:4181506-4184618 transcript_region:SL2.40ch09:4181506..4184618- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00029137g0012.1 protein AED:0.20 eAED:0.20 QI:413|1|1|1|0.83|0.71|7|344|408; (*GB) gi|126013404|gb|ABN69037.1| (e_value=0.0) protein kinase [Solanum tuberosum];; (*SWP) sp|P46573|APK1B_ARATH (e_value=0.0) Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2;; (*TAIR) AT2G28930.2 (e_value=0.0) | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424551-12426565 FORWARD LENGTH=412;; (*ITAG) Solyc09g010850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4169558-4172534 transcript_region:SL2.40ch09:4169558..4172534+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00046350g0005.1 protein AED:0.17 eAED:0.17 QI:233|1|1|1|1|1|4|173|610; (*GB) gi|225424885|ref|XP_002269340.1| (e_value=0.0) PREDICTED: nitrate transporter 1.7 [Vitis vinifera];; (*SWP) sp|Q8RX77|PTR21_ARATH (e_value=0.0) Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1;; (*TAIR) AT1G69870.1 (e_value=0.0) | Symbols: NRT1.7 | nitrate transporter 1.7 | chr1:26316208-26320097 FORWARD LENGTH=620;; (*ITAG) Solyc05g006920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1519772-1523618 transcript_region:SL2.40ch05:1519772..1523618- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00006770g0001.1 protein AED:0.47 eAED:0.47 QI:0|1|0.5|1|1|1|2|0|128; (*GB) gi|350537967|ref|NP_001233808.1| (e_value=9e-76) dihydroneopterin aldolase [Solanum lycopersicum];; (*SWP) sp|Q9SF23|FOLB1_ARATH (e_value=8e-52) Dihydroneopterin aldolase OS=Arabidopsis thaliana GN=FOLB1 PE=1 SV=1;; (*TAIR) AT3G11750.1 (e_value=6e-53) | Symbols: FOLB1 | Dihydroneopterin aldolase | chr3:3715071-3715904 REVERSE LENGTH=146;; (*ITAG) Solyc10g079830.1.1 (e_value=2e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60640242-60641421 transcript_region:SL2.40ch10:60640242..60641421+ go_terms:GO:0005515,GO:0004150 functional_description:"Dihydroneopterin aldolase (AHRD V1 **** Q6TFM2_SOLLC); contains Interpro domain(s) IPR006156 Dihydroneopterin aldolase family "; GO:0005515,GO:0004150 NbS00023045g0006.1 protein AED:0.13 eAED:0.13 QI:80|1|1|1|0.33|0|4|168|404; (*GB) gi|356510944|ref|XP_003524193.1| (e_value=2e-115) PREDICTED: uncharacterized protein LOC100800626 [Glycine max];; (*TAIR) AT1G55280.1 (e_value=8e-88) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr1:20623099-20624533 REVERSE LENGTH=390;; (*ITAG) Solyc01g005930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:606558-610602 transcript_region:SL2.40ch01:606558..610602+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023045g0009.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0|0.5|2|0|92; (*GB) gi|224073375|ref|XP_002304086.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=8e-14) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=6e-15) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc11g069980.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00023045g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|70; (*GB) gi|147858860|emb|CAN78689.1| (e_value=3e-19) hypothetical protein VITISV_039558 [Vitis vinifera];; (*SWP) sp|Q9LUH2|ALF5_ARATH (e_value=2e-17) MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1;; (*TAIR) AT3G23560.1 (e_value=1e-18) | Symbols: ALF5 | MATE efflux family protein | chr3:8454361-8456588 REVERSE LENGTH=477;; (*ITAG) Solyc10g007100.2.1 (e_value=1e-30) genomic_reference:SL2.40ch10 gene_region:1487632-1491802 transcript_region:SL2.40ch10:1487632..1491802- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00023045g0010.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|3|0|304; (*GB) gi|224073375|ref|XP_002304086.1| (e_value=6e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=9e-74) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=7e-75) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc11g069980.1.1 (e_value=1e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00006798g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|4|0|270; (*GB) gi|297738233|emb|CBI27434.3| (e_value=3e-27) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g074830.2.1 (e_value=2e-73) genomic_reference:SL2.40ch08 gene_region:56128482-56130155 transcript_region:SL2.40ch08:56128482..56130155+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00012409g0012.1 protein AED:0.39 eAED:0.44 QI:352|0.75|0.6|1|0.25|0.4|5|0|243; (*GB) gi|255569920|ref|XP_002525923.1| (e_value=4e-95) 60S ribosomal protein L7a, putative [Ricinus communis];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=1e-68) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G38895.2 (e_value=7e-73) | Symbols: | RING/U-box superfamily protein | chr5:15571321-15573315 FORWARD LENGTH=296;; (*ITAG) Solyc02g065720.2.1 (e_value=6e-141) genomic_reference:SL2.40ch02 gene_region:31449550-31459193 transcript_region:SL2.40ch02:31449550..31459193+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012409g0013.1 protein AED:0.64 eAED:1.00 QI:0|0|0|0.66|0|0.33|3|0|86 NbS00012409g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0|1|0.66|0.75|4|0|374; (*GB) gi|356573743|ref|XP_003555016.1| (e_value=8e-158) PREDICTED: GDSL esterase/lipase 7-like [Glycine max];; (*SWP) sp|Q8LFJ9|GLIP7_ARATH (e_value=5e-86) GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1;; (*TAIR) AT5G15720.1 (e_value=4e-87) | Symbols: GLIP7 | GDSL-motif lipase 7 | chr5:5124684-5126155 REVERSE LENGTH=364;; (*ITAG) Solyc02g065710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31437464-31439437 transcript_region:SL2.40ch02:31437464..31439437- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase 7 (AHRD V1 ***- GLIP7_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00012409g0007.1 protein AED:0.34 eAED:0.34 QI:0|1|0.8|1|1|1|5|0|276; (*GB) gi|116787427|gb|ABK24504.1| (e_value=6e-144) unknown [Picea sitchensis];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=1e-71) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT4G24760.1 (e_value=1e-139) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12761482-12763564 REVERSE LENGTH=365;; (*ITAG) Solyc02g065700.2.1 (e_value=5e-173) genomic_reference:SL2.40ch02 gene_region:31431050-31434593 transcript_region:SL2.40ch02:31431050..31434593- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00014045g0008.1 protein AED:0.10 eAED:0.10 QI:427|1|1|1|0.8|0.66|6|483|123; (*GB) gi|351720925|ref|NP_001235145.1| (e_value=4e-77) uncharacterized protein LOC100527884 [Glycine max];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=8e-78) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT1G62040.2 (e_value=3e-77) | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133;; (*ITAG) Solyc02g080590.2.1 (e_value=1e-81) genomic_reference:SL2.40ch02 gene_region:39366516-39369239 transcript_region:SL2.40ch02:39366516..39369239+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00014045g0009.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|0.5|0|0|2|84|87; (*GB) gi|224115748|ref|XP_002317115.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g080600.1.1 (e_value=2e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39369870-39370067 transcript_region:SL2.40ch02:39369870..39370067- functional_description:"Unknown Protein (AHRD V1)"; NbS00057205g0006.1 protein AED:0.21 eAED:0.21 QI:132|0.83|0.85|1|0.66|0.42|7|286|313; (*GB) gi|224089993|ref|XP_002308897.1| (e_value=4e-120) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10250.2 (e_value=1e-113) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc10g079710.1.1 (e_value=8e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60536606-60540135 transcript_region:SL2.40ch10:60536606..60540135+ functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 ***- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00005109g0011.1 protein AED:0.03 eAED:0.03 QI:71|1|0.5|1|1|1|2|0|222; (*GB) gi|350539073|ref|NP_001233861.1| (e_value=1e-129) germin-like protein precursor [Solanum lycopersicum];; (*SWP) sp|Q94EG3|NEC1_NICLS (e_value=6e-111) Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=4e-95) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102380.2.1 (e_value=3e-132) genomic_reference:SL2.40ch01 gene_region:82973903-82974888 transcript_region:SL2.40ch01:82973903..82974888+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O64439_SOLLC); contains Interpro domain(s) IPR019780 Germin, manganese binding site "; GO:0045735,GO:0048046 NbS00005109g0003.1 protein AED:0.14 eAED:0.14 QI:170|1|0.5|1|0|0.5|2|0|256; (*GB) gi|40949663|gb|AAR97545.1| (e_value=8e-149) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q94EG3|NEC1_NICLS (e_value=6e-102) Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1;; (*TAIR) AT3G62020.1 (e_value=2e-90) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc01g102400.2.1 (e_value=4e-138) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00005109g0016.1 protein AED:0.21 eAED:0.22 QI:162|0.83|0.42|1|0.83|0.71|7|0|792; (*GB) gi|359487602|ref|XP_002278667.2| (e_value=0.0) PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like isoform 1 [Vitis vinifera];; (*SWP) sp|O13775|SYEC_SCHPO (e_value=0.0) Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1 SV=1;; (*TAIR) AT5G26710.1 (e_value=0.0) | Symbols: | Glutamyl/glutaminyl-tRNA synthetase, class Ic | chr5:9305673-9308247 FORWARD LENGTH=719;; (*ITAG) Solyc01g102410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82987257-82996076 transcript_region:SL2.40ch01:82987257..82996076- go_terms:GO:0006412,GO:0005737,GO:0004867 functional_description:"Glutaminyl-tRNA synthetase (AHRD V1 ***- A8BEZ0_GIALA); contains Interpro domain(s) IPR004526 Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic "; GO:0006412,GO:0005737,GO:0004867 NbS00056611g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.22|1|0.37|0.22|9|346|1154; (*GB) gi|297734038|emb|CBI15285.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LV10|PTR53_ARATH (e_value=0.0) Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1;; (*TAIR) AT5G62680.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25165430-25167822 REVERSE LENGTH=616;; (*ITAG) Solyc03g113440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57639921-57642323 transcript_region:SL2.40ch03:57639921..57642323- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00009144g0004.1 protein AED:0.01 eAED:0.01 QI:1204|0.75|0.8|1|0.5|0.6|5|200|310; (*GB) gi|359474260|ref|XP_002282510.2| (e_value=0.0) PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=2e-108) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G12570.1 (e_value=7e-134) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:4278192-4280753 REVERSE LENGTH=572;; (*ITAG) Solyc08g080190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60678188-60683202 transcript_region:SL2.40ch08:60678188..60683202- go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A8NUQ9_COPC7); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00009144g0015.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|608; (*GB) gi|224053993|ref|XP_002298075.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5X8|MOCOS_ARATH (e_value=1e-16) Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1;; (*TAIR) AT5G51920.1 (e_value=7e-164) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:21097202-21098914 REVERSE LENGTH=570;; (*ITAG) Solyc08g080180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60672326-60674167 transcript_region:SL2.40ch08:60672326..60674167- go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 ***- C9SRE5_VERA1); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00009144g0017.1 protein AED:0.30 eAED:0.31 QI:22|0.88|0.6|1|1|1|10|0|660; (*GB) gi|225426757|ref|XP_002282540.1| (e_value=0.0) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=0.0) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.2 (e_value=0.0) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=700;; (*ITAG) Solyc08g080200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60686000-60692605 transcript_region:SL2.40ch08:60686000..60692605- go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00047259g0006.1 protein AED:0.03 eAED:0.09 QI:0|0|0|1|0|0|2|0|383; (*GB) gi|225426609|ref|XP_002280587.1| (e_value=1e-35) PREDICTED: uncharacterized protein At1g01500-like [Vitis vinifera];; (*TAIR) AT4G24110.1 (e_value=1e-26) | Symbols: | unknown protein; Has 76 Blast hits to 76 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12520010-12520762 REVERSE LENGTH=250;; (*ITAG) Solyc08g083050.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62802131-62802859 transcript_region:SL2.40ch08:62802131..62802859- functional_description:"Unknown Protein (AHRD V1)"; NbS00000087g0001.1 protein AED:0.17 eAED:0.17 QI:131|0.66|0.8|0.9|0.88|0.9|10|273|441; (*GB) gi|225432026|ref|XP_002279844.1| (e_value=1e-92) PREDICTED: poly(A) polymerase [Vitis vinifera];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=9e-34) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT3G06560.1 (e_value=5e-85) | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507;; (*ITAG) Solyc12g099180.1.1 (e_value=2e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64761260-64764107 transcript_region:SL2.40ch12:64761260..64764107+ go_terms:GO:0005634,GO:0006350,GO:0031123 functional_description:"Poly(A) polymerase (AHRD V1 ***- Q7XJ92_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region "; GO:0005634,GO:0006350,GO:0031123 NbS00000087g0008.1 protein AED:0.31 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|174; (*GB) gi|217071782|gb|ACJ84251.1| (e_value=7e-79) unknown [Medicago truncatula];; (*SWP) sp|Q9FGY4|FB341_ARATH (e_value=3e-68) F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1;; (*TAIR) AT5G49610.1 (e_value=2e-69) | Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359;; (*ITAG) Solyc12g099170.1.1 (e_value=8e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64758148-64759230 transcript_region:SL2.40ch12:64758148..64759230+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR)"; NbS00002975g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|149; (*GB) gi|225439199|ref|XP_002275569.1| (e_value=4e-62) PREDICTED: membrin-11 [Vitis vinifera];; (*SWP) sp|Q9SJL6|MEM11_ARATH (e_value=1e-57) Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1;; (*TAIR) AT2G36900.1 (e_value=1e-58) | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:15491615-15492587 REVERSE LENGTH=225;; (*ITAG) Solyc07g047720.2.1 (e_value=7e-84) genomic_reference:SL2.40ch07 gene_region:56257147-56260699 transcript_region:SL2.40ch07:56257147..56260699+ go_terms:GO:0005215,GO:0005484 functional_description:"Golgi SNAP receptor complex member bos1 (AHRD V1 **-* B0D8E0_LACBS); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0005215,GO:0005484 NbS00002975g0002.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|225447272|ref|XP_002279122.1| (e_value=5e-108) PREDICTED: F-box protein At3g07870 [Vitis vinifera];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=3e-80) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=2e-81) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00055814g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|108 NbS00040894g0003.1 protein AED:0.00 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|463; (*GB) gi|225464346|ref|XP_002272090.1| (e_value=0.0) PREDICTED: probable sarcosine oxidase-like [Vitis vinifera];; (*SWP) sp|Q9SJA7|SOX_ARATH (e_value=2e-139) Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1;; (*TAIR) AT2G24580.1 (e_value=1e-140) | Symbols: | FAD-dependent oxidoreductase family protein | chr2:10444928-10446178 REVERSE LENGTH=416;; (*ITAG) Solyc08g006430.2.1 (e_value=3e-142) genomic_reference:SL2.40ch08 gene_region:1030757-1039198 transcript_region:SL2.40ch08:1030757..1039198+ go_terms:GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 functional_description:"N-methyl-L-tryptophan oxidase (AHRD V1 *-*- D2ZAX1_9ENTR); contains Interpro domain(s) IPR006281 Sarcosine oxidase, monomeric "; GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 NbS00012326g0005.1 protein AED:0.25 eAED:0.27 QI:81|0.66|0.68|0.93|0.93|0.87|16|0|967; (*GB) gi|224056978|ref|XP_002299105.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BKC5|IPO5_MOUSE (e_value=4e-74) Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3;; (*TAIR) AT5G19820.1 (e_value=3e-176) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc08g074460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55733336-55738996 transcript_region:SL2.40ch08:55733336..55738996+ go_terms:GO:0008536 functional_description:"Importin beta-3 (AHRD V1 **-- B0WUN0_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008536 NbS00012326g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|3|0|419; (*GB) gi|225430590|ref|XP_002265288.1| (e_value=0.0) PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera];; (*SWP) sp|Q55BF2|NMD3_DICDI (e_value=7e-115) 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1;; (*TAIR) AT2G03820.1 (e_value=0.0) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc11g011780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4775185-4776693 transcript_region:SL2.40ch11:4775185..4776693+ functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; NbS00022867g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|16580130|gb|AAK92213.1| (e_value=1e-110) bZIP transcription factor BZI-2 [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-21) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=5e-47) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc01g109880.2.1 (e_value=4e-91) genomic_reference:SL2.40ch01 gene_region:88484807-88485881 transcript_region:SL2.40ch01:88484807..88485881+ go_terms:GO:0046982,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 ***- C0KYN1_SOLLC); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0046982,GO:0003677 NbS00022867g0004.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|0|0|3|0|63 NbS00025267g0007.1 protein AED:0.15 eAED:0.15 QI:232|1|1|1|1|1|14|444|616; (*GB) gi|350538115|ref|NP_001234583.1| (e_value=0.0) glucose-6-phosphate isomerase [Solanum lycopersicum];; (*SWP) sp|B2J5F1|G6PI_NOSP7 (e_value=0.0) Glucose-6-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgi PE=3 SV=1;; (*TAIR) AT4G24620.1 (e_value=0.0) | Symbols: PGI1, PGI | phosphoglucose isomerase 1 | chr4:12708972-12712610 REVERSE LENGTH=613;; (*ITAG) Solyc04g076090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58635109-58645353 transcript_region:SL2.40ch04:58635109..58645353+ go_terms:GO:0004347 functional_description:"Glucose-6-phosphate isomerase 2"; GO:0004347 NbS00012101g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.75|0.33|0.75|4|0|148; (*GB) gi|15227200|ref|NP_179828.1| (e_value=1e-48) peroxidase [Arabidopsis thaliana];; (*SWP) sp|Q9SJZ2|PER17_ARATH (e_value=4e-50) Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1;; (*TAIR) AT2G22420.1 (e_value=3e-51) | Symbols: | Peroxidase superfamily protein | chr2:9513341-9514484 FORWARD LENGTH=329;; (*ITAG) Solyc11g010120.1.1 (e_value=4e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3243625-3246066 transcript_region:SL2.40ch11:3243625..3246066+ go_terms:GO:0055114 functional_description:"Peroxidase 17 (AHRD V1 ***- D7LE03_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00012101g0008.1 protein AED:0.27 eAED:0.76 QI:0|0.33|0|0.75|0.33|0.5|4|0|533; (*GB) gi|359493640|ref|XP_002282675.2| (e_value=1e-141) PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Vitis vinifera];; (*SWP) sp|Q56X05|PPR15_ARATH (e_value=2e-111) Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2;; (*TAIR) AT1G06150.1 (e_value=3e-106) | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322;; (*ITAG) Solyc01g100790.1.1 (e_value=9e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00056466g0001.1 protein AED:0.20 eAED:0.20 QI:453|0|0.5|0.5|1|1|2|0|99; (*ITAG) Solyc10g011750.2.1 (e_value=7e-33) genomic_reference:SL2.40ch10 gene_region:3990598-3992416 transcript_region:SL2.40ch10:3990598..3992416- functional_description:"NDR1/HIN1-Like protein 2 (AHRD V1 **-- B6TX37_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00058044g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|132; (*GB) gi|226505642|ref|NP_001148325.1| (e_value=2e-25) ubiquitin-like protein SMT3 [Zea mays];; (*SWP) sp|P55857|SUMO1_ORYSJ (e_value=4e-25) Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=5e-25) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc07g064880.2.1 (e_value=9e-27) genomic_reference:SL2.40ch07 gene_region:64080741-64083209 transcript_region:SL2.40ch07:64080741..64083209- go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier (AHRD V1 ***- A6BMG7_COPCI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00058044g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.75|1|1|1|4|341|339; (*GB) gi|297737474|emb|CBI26675.3| (e_value=2e-140) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LTQ0|RTL2_ARATH (e_value=1e-99) Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1;; (*TAIR) AT3G20420.1 (e_value=1e-100) | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 | chr3:7119371-7120895 REVERSE LENGTH=391;; (*ITAG) Solyc12g014410.1.1 (e_value=9e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5352607-5354889 transcript_region:SL2.40ch12:5352607..5354889+ go_terms:GO:0004525 functional_description:"Ribonuclease III family protein (AHRD V1 *-** D7MAI2_ARALY); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0004525 NbS00058044g0009.1 protein AED:0.33 eAED:0.33 QI:56|1|1|1|0|0.33|3|248|26 NbS00035538g0003.1 protein AED:0.10 eAED:0.10 QI:85|1|1|1|0.92|0.92|14|284|547; (*GB) gi|255582775|ref|XP_002532163.1| (e_value=0.0) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SFB0|FRD3_ARATH (e_value=0.0) MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1;; (*TAIR) AT3G08040.2 (e_value=0.0) | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family protein | chr3:2566593-2569397 REVERSE LENGTH=526;; (*ITAG) Solyc01g087150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73849052-73851926 transcript_region:SL2.40ch01:73849052..73851926+ go_terms:GO:0005215 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00008402g0021.1 protein AED:0.22 eAED:0.22 QI:64|0.4|0.5|1|1|1|6|0|314; (*GB) gi|156763848|emb|CAO99126.1| (e_value=3e-137) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q2KNL6|GEDH1_OCIBA (e_value=2e-133) Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1;; (*TAIR) AT4G39330.1 (e_value=1e-103) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc11g010980.1.1 (e_value=7e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4015080-4019102 transcript_region:SL2.40ch11:4015080..4019102- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- ADH2_BACST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00008402g0016.1 protein AED:0.24 eAED:0.24 QI:128|0.7|0.54|1|0.8|0.63|11|176|581; (*GB) gi|214014136|gb|ACJ61779.1| (e_value=2e-177) ELI3, partial [Nicotiana benthamiana];; (*SWP) sp|Q2KNL6|GEDH1_OCIBA (e_value=7e-138) Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1;; (*TAIR) AT4G37980.1 (e_value=4e-113) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g010960.1.1 (e_value=1e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4006687-4010471 transcript_region:SL2.40ch11:4006687..4010471- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- ADH2_BACST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00044039g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|95 NbS00021236g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|359483498|ref|XP_002278731.2| (e_value=3e-126) PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera];; (*SWP) sp|Q9S7D9|ACCR1_ARATH (e_value=2e-39) Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1;; (*TAIR) AT5G46080.1 (e_value=1e-90) | Symbols: | Protein kinase superfamily protein | chr5:18689723-18690721 REVERSE LENGTH=332;; (*ITAG) Solyc10g008960.1.1 (e_value=2e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2992540-2993586 transcript_region:SL2.40ch10:2992540..2993586- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbC25985483g0001.1 protein AED:0.42 eAED:0.54 QI:17|0|0.5|1|0|0|2|0|70 NbS00010804g0011.1 protein AED:0.26 eAED:0.29 QI:0|0.71|0.66|1|0.85|0.86|15|433|1144; (*GB) gi|328835772|dbj|BAK19067.1| (e_value=0.0) GIGANTEA [Ipomoea nil];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=0.0) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=0.0) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc04g071990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56606549-56648468 transcript_region:SL2.40ch04:56606549..56648468- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 1"; GO:0005515 NbS00010804g0009.1 protein AED:0.23 eAED:0.60 QI:0|0.25|0|1|0|0|5|0|234; (*ITAG) Solyc04g014590.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4863327-4865916 transcript_region:SL2.40ch04:4863327..4865916- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00010804g0008.1 protein AED:0.33 eAED:0.55 QI:0|0|0.5|1|1|1|2|112|57 NbS00010804g0010.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|3|0|66 NbS00024144g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|224140635|ref|XP_002323687.1| (e_value=3e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=7e-70) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc10g074820.1.1 (e_value=4e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57851557-57852507 transcript_region:SL2.40ch10:57851557..57852507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00024144g0007.1 protein AED:0.19 eAED:0.19 QI:266|0.66|0.57|1|1|1|7|302|394; (*GB) gi|225439086|ref|XP_002265705.1| (e_value=2e-121) PREDICTED: uncharacterized protein LOC100255300 [Vitis vinifera];; (*TAIR) AT5G01970.1 (e_value=7e-98) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:373014-374651 REVERSE LENGTH=351;; (*ITAG) Solyc10g074800.1.1 (e_value=4e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57836904-57839499 transcript_region:SL2.40ch10:57836904..57839499+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024144g0016.1 protein AED:0.47 eAED:0.85 QI:0|0|0|1|1|1|2|0|76 NbC25948175g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|3|0|128; (*GB) gi|388503788|gb|AFK39960.1| (e_value=2e-35) unknown [Lotus japonicus];; (*SWP) sp|Q8GX77|FB316_ARATH (e_value=1e-23) F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1;; (*TAIR) AT1G61340.1 (e_value=7e-25) | Symbols: | F-box family protein | chr1:22628526-22629741 FORWARD LENGTH=185;; (*ITAG) Solyc02g079150.1.1 (e_value=1e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38335362-38336037 transcript_region:SL2.40ch02:38335362..38336037- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033067g0005.1 protein AED:0.28 eAED:0.33 QI:90|0|0|1|0|0.16|6|0|392; (*GB) gi|307135916|gb|ADN33779.1| (e_value=2e-88) tellurite resistance protein teha [Cucumis melo subsp. melo];; (*SWP) sp|Q9ASQ7|SLAH2_ARATH (e_value=1e-42) S-type anion channel SLAH2 OS=Arabidopsis thaliana GN=SLAH2 PE=2 SV=1;; (*TAIR) AT4G27970.1 (e_value=1e-43) | Symbols: SLAH2 | SLAC1 homologue 2 | chr4:13918290-13920122 REVERSE LENGTH=519;; (*ITAG) Solyc06g036440.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22680542-22683163 transcript_region:SL2.40ch06:22680542..22683163+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00014006g0014.1 protein AED:0.07 eAED:0.07 QI:440|0.66|0.85|0.85|0.83|0.85|7|385|230; (*GB) gi|359482329|ref|XP_003632756.1| (e_value=3e-67) PREDICTED: DNA replication complex GINS protein PSF1-like [Vitis vinifera];; (*SWP) sp|Q14691|PSF1_HUMAN (e_value=2e-21) DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1;; (*TAIR) AT1G80190.1 (e_value=2e-61) | Symbols: PSF1 | partner of SLD five 1 | chr1:30159476-30161115 FORWARD LENGTH=201;; (*ITAG) Solyc09g008630.2.1 (e_value=3e-141) genomic_reference:SL2.40ch09 gene_region:2093603-2098893 transcript_region:SL2.40ch09:2093603..2098893- go_terms:GO:0005515 functional_description:"DNA replication complex GINS protein PSF1 (AHRD V1 ***- B6THR1_MAIZE); contains Interpro domain(s) IPR005339 GINS complex, Psf1 component "; GO:0005515 NbS00014006g0016.1 protein AED:0.26 eAED:0.26 QI:192|0.88|0.9|1|0.44|0.6|10|392|223; (*GB) gi|225441076|ref|XP_002264435.1| (e_value=4e-105) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SR70|FK164_ARATH (e_value=4e-98) Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1;; (*TAIR) AT3G10060.1 (e_value=3e-99) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3102291-3103801 FORWARD LENGTH=230;; (*ITAG) Solyc09g008650.2.1 (e_value=4e-134) genomic_reference:SL2.40ch09 gene_region:2103668-2112469 transcript_region:SL2.40ch09:2103668..2112469- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B8HUH5_CYAP4); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00014006g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.7|0.45|0.90|0.5|0.72|11|0|599; (*GB) gi|225441084|ref|XP_002264613.1| (e_value=0.0) PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis vinifera];; (*SWP) sp|Q9ZQA8|PABPX_ARATH (e_value=2e-172) Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1;; (*TAIR) AT2G36660.1 (e_value=1e-173) | Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609;; (*ITAG) Solyc09g008620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2086687-2092739 transcript_region:SL2.40ch09:2086687..2092739+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate binding protein (AHRD V1 ***- O57336_PETMA); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00014006g0017.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|360; (*GB) gi|359481950|ref|XP_002264481.2| (e_value=2e-169) PREDICTED: wall-associated receptor kinase-like 20-like [Vitis vinifera];; (*SWP) sp|Q9LZM4|WAKLQ_ARATH (e_value=7e-74) Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1;; (*TAIR) AT5G02070.1 (e_value=6e-75) | Symbols: | Protein kinase family protein | chr5:405895-408220 REVERSE LENGTH=657;; (*ITAG) Solyc09g008640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2100959-2102845 transcript_region:SL2.40ch09:2100959..2102845- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00059804g0004.1 protein AED:0.21 eAED:0.21 QI:316|1|1|1|1|1|4|160|574; (*GB) gi|350538711|ref|NP_001233844.1| (e_value=0.0) NIM1-like protein 2 [Solanum lycopersicum];; (*SWP) sp|Q8L746|NPR3_ARATH (e_value=2e-155) Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1;; (*TAIR) AT5G45110.1 (e_value=2e-156) | Symbols: NPR3, ATNPR3 | NPR1-like protein 3 | chr5:18229319-18231334 FORWARD LENGTH=586;; (*ITAG) Solyc07g044980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55346685-55351408 transcript_region:SL2.40ch07:55346685..55351408- go_terms:GO:0005515 functional_description:"NPR1-1 protein (Fragment) (AHRD V1 ***- B8XQT4_SOYBN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00022097g0001.1 protein AED:0.31 eAED:0.33 QI:0|0.5|0.6|1|1|1|5|241|122; (*GB) gi|18447913|dbj|BAB84322.1| (e_value=1e-61) ras-related protein RAB8-1 [Nicotiana tabacum];; (*SWP) sp|O24466|RAE1A_ARATH (e_value=4e-58) Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1;; (*TAIR) AT5G59840.1 (e_value=2e-59) | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=3e-63) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00022097g0002.1 protein AED:0.33 eAED:0.34 QI:0|0.71|0.5|1|1|1|8|0|336; (*GB) gi|255584549|ref|XP_002533001.1| (e_value=3e-58) Bipolar kinesin KRP-130, putative [Ricinus communis];; (*TAIR) AT2G37420.1 (e_value=1e-37) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00022097g0013.1 protein AED:0.41 eAED:0.48 QI:0|0.66|0.25|1|0|0|4|0|181; (*GB) gi|225439866|ref|XP_002274736.1| (e_value=9e-47) PREDICTED: 125 kDa kinesin-related protein [Vitis vinifera];; (*TAIR) AT2G37420.1 (e_value=1e-34) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=1e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00022097g0011.1 protein AED:0.48 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|74; (*GB) gi|15231259|ref|NP_190171.1| (e_value=7e-30) P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana];; (*SWP) sp|O23826|K125_TOBAC (e_value=5e-28) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=2e-32) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc10g086340.1.1 (e_value=4e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbC24030932g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|147864042|emb|CAN78957.1| (e_value=6e-28) hypothetical protein VITISV_025691 [Vitis vinifera];; (*SWP) sp|Q9SGE3|H2B2_ARATH (e_value=4e-26) Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1;; (*TAIR) AT1G08170.1 (e_value=3e-27) | Symbols: | Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=243;; (*ITAG) Solyc06g074750.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42689670-42690521 transcript_region:SL2.40ch06:42689670..42690521+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 *-*- B6SGC3_MAIZE); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbC25128768g0001.1 protein AED:0.16 eAED:0.40 QI:79|-1|0|1|-1|0|1|0|65; (*GB) gi|224142171|ref|XP_002324432.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVV2|XTH26_ARATH (e_value=5e-20) Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1;; (*TAIR) AT4G28850.1 (e_value=4e-21) | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase 26 | chr4:14244336-14245781 FORWARD LENGTH=292;; (*ITAG) Solyc12g007260.1.1 (e_value=9e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1680869-1682934 transcript_region:SL2.40ch12:1680869..1682934+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00032709g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|1|0|0|3|0|172; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g074800.2.1 (e_value=2e-33) genomic_reference:SL2.40ch08 gene_region:56111879-56112933 transcript_region:SL2.40ch08:56111879..56112933+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032709g0010.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|294; (*GB) gi|224101041|ref|XP_002312117.1| (e_value=3e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28CY2|EIF3G_XENTR (e_value=1e-46) Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1;; (*TAIR) AT3G11400.1 (e_value=2e-125) | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation initiation factor 3G1 | chr3:3578536-3580366 FORWARD LENGTH=294;; (*ITAG) Solyc08g074790.2.1 (e_value=2e-154) genomic_reference:SL2.40ch08 gene_region:56103446-56105519 transcript_region:SL2.40ch08:56103446..56105519+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 4 (AHRD V1 ***- B4FBV8_MAIZE); contains Interpro domain(s) IPR017334 Translation initiation factor 3, RNA-binding subunit "; GO:0005515 NbS00032709g0016.1 protein AED:0.29 eAED:0.29 QI:154|1|1|1|0.53|0.57|14|638|565; (*GB) gi|255557731|ref|XP_002519895.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|C0LGL9|FEI2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1;; (*TAIR) AT2G35620.2 (e_value=0.0) | Symbols: FEI2 | Leucine-rich repeat protein kinase family protein | chr2:14961187-14964640 REVERSE LENGTH=589;; (*ITAG) Solyc08g074760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56067158-56077961 transcript_region:SL2.40ch08:56067158..56077961+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00032709g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|475; (*GB) gi|225427550|ref|XP_002266461.1| (e_value=4e-134) PREDICTED: probable aspartic protease At2g35615 [Vitis vinifera];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=2e-118) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=2e-120) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc08g005830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:639362-640702 transcript_region:SL2.40ch08:639362..640702+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00061332g0003.1 protein AED:0.61 eAED:0.54 QI:0|0.33|0|0.5|0.66|0.75|4|0|356; (*GB) gi|359473511|ref|XP_002272014.2| (e_value=1e-36) PREDICTED: transcription elongation regulator 1-like [Vitis vinifera];; (*TAIR) AT3G19840.1 (e_value=5e-17) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=5e-123) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00027314g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|0.5|4|0|113; (*GB) gi|255564772|ref|XP_002523380.1| (e_value=2e-73) Protein FAM96B, putative [Ricinus communis];; (*SWP) sp|Q9C9G6|U195A_ARATH (e_value=3e-65) MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2;; (*TAIR) AT1G68310.2 (e_value=2e-66) | Symbols: AE7 | Protein of unknown function (DUF59) | chr1:25599812-25601239 FORWARD LENGTH=157;; (*ITAG) Solyc06g083060.2.1 (e_value=4e-75) genomic_reference:SL2.40ch06 gene_region:44900180-44904605 transcript_region:SL2.40ch06:44900180..44904605- go_terms:GO:0005515,GO:0010209 functional_description:"FAM96B (AHRD V1 **-- B0WXK4_CULQU); contains Interpro domain(s) IPR002744 Protein of unknown function DUF59 "; GO:0005515,GO:0010209 NbC26143351g0003.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|0|0.33|3|590|107; (*GB) gi|359473447|ref|XP_003631300.1| (e_value=5e-41) PREDICTED: ubiquitin-like-specific protease 1D-like [Vitis vinifera];; (*SWP) sp|Q2PS26|ULP1D_ARATH (e_value=3e-35) Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1;; (*TAIR) AT1G60220.1 (e_value=2e-36) | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1:22208332-22211910 FORWARD LENGTH=584;; (*ITAG) Solyc05g005630.2.1 (e_value=1e-52) genomic_reference:SL2.40ch05 gene_region:440809-452678 transcript_region:SL2.40ch05:440809..452678+ go_terms:GO:0016929 functional_description:"Sentrin/SUMO-specific protease 15 (AHRD V1 *-** Q6IE03_MOUSE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbC26143351g0001.1 protein AED:0.24 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc09g061480.1.1 (e_value=8e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:54836811-54837089 transcript_region:SL2.40ch09:54836811..54837089- functional_description:"Unknown Protein (AHRD V1)"; NbS00045239g0004.1 protein AED:0.00 eAED:0.07 QI:0|0|0|1|1|0.5|2|0|547; (*GB) gi|356499663|ref|XP_003518656.1| (e_value=8e-107) PREDICTED: uncharacterized protein LOC100787520 [Glycine max];; (*TAIR) AT5G13660.1 (e_value=5e-63) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4405094-4406983 FORWARD LENGTH=536;; (*ITAG) Solyc09g010350.2.1 (e_value=3e-86) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00012453g0015.1 protein AED:0.24 eAED:0.24 QI:134|0.85|0.75|1|0.85|0.87|8|177|368; (*GB) gi|255566579|ref|XP_002524274.1| (e_value=5e-156) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q7TQ35|PARK7_MESAU (e_value=1e-33) Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1;; (*TAIR) AT1G53280.1 (e_value=3e-104) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr1:19864942-19867341 REVERSE LENGTH=438;; (*ITAG) Solyc07g062610.2.1 (e_value=3e-132) genomic_reference:SL2.40ch07 gene_region:62528306-62532784 transcript_region:SL2.40ch07:62528306..62532784+ go_terms:GO:0003723,GO:0051920 functional_description:"4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ (AHRD V1 *--- C8T4T4_KLEPR); contains Interpro domain(s) IPR006287 DJ-1 "; GO:0003723,GO:0051920 NbS00012453g0016.1 protein AED:0.34 eAED:0.34 QI:0|1|0.6|1|0.5|0.8|5|0|374; (*GB) gi|255578162|ref|XP_002529950.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=1e-113) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G16670.1 (e_value=5e-170) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc07g062620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62539520-62542612 transcript_region:SL2.40ch07:62539520..62542612+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6SYF0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00012453g0010.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|597; (*GB) gi|224117064|ref|XP_002317467.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9MAH4|AB10G_ARATH (e_value=2e-176) ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1;; (*TAIR) AT1G53270.1 (e_value=2e-177) | Symbols: | ABC-2 type transporter family protein | chr1:19862878-19864650 FORWARD LENGTH=590;; (*ITAG) Solyc07g062630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62543122-62544987 transcript_region:SL2.40ch07:62543122..62544987- go_terms:GO:0008559 functional_description:"ABC transporter G family member 10 (AHRD V1 ***- AB10G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00013658g0009.1 protein AED:0.18 eAED:0.24 QI:0|0|0|1|0.5|0.33|3|0|740; (*GB) gi|302142585|emb|CBI19788.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00013658g0013.1 protein AED:0.46 eAED:0.48 QI:0|0|0|1|0|0.5|2|0|189; (*GB) gi|255577244|ref|XP_002529504.1| (e_value=3e-72) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=8e-73) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=6e-74) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=1e-76) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00013658g0014.1 protein AED:0.45 eAED:0.79 QI:0|0|0|1|0|0|3|0|105; (*GB) gi|224127272|ref|XP_002320031.1| (e_value=4e-15) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9FHS6|FK119_ARATH (e_value=7e-14) F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1;; (*TAIR) AT5G43190.1 (e_value=6e-15) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:17340300-17341511 REVERSE LENGTH=403;; (*ITAG) Solyc04g077840.2.1 (e_value=2e-15) genomic_reference:SL2.40ch04 gene_region:60314701-60316185 transcript_region:SL2.40ch04:60314701..60316185+ functional_description:"F-box/kelch-repeat protein At5g43190 (AHRD V1 *-*- FK119_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00031850g0008.1 protein AED:0.13 eAED:0.13 QI:0|0|0.25|0.5|0|0|4|224|381; (*GB) gi|224116970|ref|XP_002331797.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-35) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G15042.1 (e_value=9e-50) | Symbols: | Leucine-rich repeat (LRR) family protein | chr2:6510165-6512335 FORWARD LENGTH=543;; (*ITAG) Solyc01g098370.1.1 (e_value=1e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80660540-80663353 transcript_region:SL2.40ch01:80660540..80663353- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00031850g0004.1 protein AED:0.35 eAED:0.35 QI:303|1|1|1|0.66|0.6|10|465|272; (*GB) gi|225434245|ref|XP_002280402.1| (e_value=2e-167) PREDICTED: dihydrodipicolinate reductase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O80574|DAPB1_ARATH (e_value=9e-166) Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2;; (*TAIR) AT2G44040.1 (e_value=7e-167) | Symbols: | Dihydrodipicolinate reductase, bacterial/plant | chr2:18221985-18223998 REVERSE LENGTH=347;; (*ITAG) Solyc01g098380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80665607-80671287 transcript_region:SL2.40ch01:80665607..80671287- go_terms:GO:0008839 functional_description:"Dihydrodipicolinate reductase family protein (AHRD V1 **** D7LKV2_ARALY); contains Interpro domain(s) IPR011859 Dihydrodipicolinate reductase, plant "; GO:0008839 NbS00033046g0007.1 protein AED:0.15 eAED:0.15 QI:42|0.5|0|1|1|1|5|0|234; (*GB) gi|225439489|ref|XP_002268055.1| (e_value=2e-34) PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=4e-23) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=2e-36) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc10g076460.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58766004-58767607 transcript_region:SL2.40ch10:58766004..58767607+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q2QYV2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00035315g0013.1 protein AED:0.10 eAED:0.10 QI:0|0.9|0.81|1|0.8|0.81|11|535|503; (*GB) gi|297738362|emb|CBI27563.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SS94|CD48C_ARATH (e_value=1e-169) Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2;; (*TAIR) AT3G01610.1 (e_value=7e-171) | Symbols: CDC48C, emb1354 | cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820;; (*ITAG) Solyc01g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00035315g0014.1 protein AED:0.24 eAED:0.24 QI:0|0.92|0.92|1|0.92|0.92|14|278|681; (*GB) gi|359477001|ref|XP_002264011.2| (e_value=0.0) PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like [Vitis vinifera];; (*SWP) sp|Q55694|MNMG_SYNY3 (e_value=0.0) tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mnmG PE=3 SV=1;; (*TAIR) AT2G13440.1 (e_value=0.0) | Symbols: | glucose-inhibited division family A protein | chr2:5593270-5598296 REVERSE LENGTH=723;; (*ITAG) Solyc01g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69824288-69836410 transcript_region:SL2.40ch01:69824288..69836410- go_terms:GO:0002098,GO:0008033 functional_description:"tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG (AHRD V1 ***- B4VZ14_9CYAN); contains Interpro domain(s) IPR004416 Glucose-inhibited division protein A "; GO:0002098,GO:0008033 NbS00021078g0012.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0.16|0.28|7|0|1859; (*GB) gi|147795292|emb|CAN64990.1| (e_value=0.0) hypothetical protein VITISV_001772 [Vitis vinifera];; (*SWP) sp|O81767|PP348_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2;; (*TAIR) AT4G33990.1 (e_value=0.0) | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:16290141-16292612 REVERSE LENGTH=823;; (*ITAG) Solyc11g040060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28426014-28429431 transcript_region:SL2.40ch11:28426014..28429431- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021078g0014.1 protein AED:0.21 eAED:0.22 QI:37|0.5|0.33|1|0|0|3|607|657; (*GB) gi|359496846|ref|XP_002272372.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera];; (*SWP) sp|Q9LIQ7|PP252_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1;; (*TAIR) AT3G24000.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8672774-8674881 FORWARD LENGTH=665;; (*ITAG) Solyc11g005970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:771791-773752 transcript_region:SL2.40ch11:771791..773752- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021078g0013.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0.5|2|0|146; (*GB) gi|225459736|ref|XP_002284744.1| (e_value=2e-50) PREDICTED: pentatricopeptide repeat-containing protein At1g20230 [Vitis vinifera];; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=4e-44) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2;; (*TAIR) AT1G20230.1 (e_value=3e-45) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7009570-7011852 FORWARD LENGTH=760;; (*ITAG) Solyc11g005960.1.1 (e_value=3e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:767352-769631 transcript_region:SL2.40ch11:767352..769631- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003125g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.75|0.6|5|163|429; (*GB) gi|255571079|ref|XP_002526490.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=8e-152) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT5G47070.1 (e_value=6e-153) | Symbols: | Protein kinase superfamily protein | chr5:19118683-19120528 REVERSE LENGTH=410;; (*ITAG) Solyc01g088690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75198540-75201611 transcript_region:SL2.40ch01:75198540..75201611- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00003125g0007.1 protein AED:0.35 eAED:0.47 QI:42|0|0.5|1|1|1|2|187|60 NbS00003125g0002.1 protein AED:0.32 eAED:0.51 QI:0|0|0|1|1|1|3|0|441; (*GB) gi|359489321|ref|XP_002269223.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera];; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=6e-68) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=4e-69) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc01g088670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75192649-75195378 transcript_region:SL2.40ch01:75192649..75195378+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003125g0009.1 protein AED:0.40 eAED:0.73 QI:0|0|0|1|0|0|4|0|253; (*ITAG) Solyc01g088670.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75192649-75195378 transcript_region:SL2.40ch01:75192649..75195378+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046630g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|238; (*GB) gi|22128587|gb|AAM52339.1| (e_value=8e-102) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=3e-48) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=2e-49) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007740.1.1 (e_value=4e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005729g0007.1 protein AED:0.18 eAED:0.18 QI:365|0.71|0.75|0.87|0.85|0.75|8|205|488; (*GB) gi|225439717|ref|XP_002273012.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Vitis vinifera];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=0.0) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=0.0) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc03g095510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50069695-50073790 transcript_region:SL2.40ch03:50069695..50073790- go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- D3BIR2_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005729g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|649; (*GB) gi|359478866|ref|XP_002276162.2| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g58300 [Vitis vinifera];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=0.0) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc03g095490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50063905-50066754 transcript_region:SL2.40ch03:50063905..50066754+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00005729g0012.1 protein AED:0.37 eAED:0.37 QI:13|0.4|0.33|0.5|0.8|0.66|6|0|186; (*GB) gi|224127868|ref|XP_002329197.1| (e_value=3e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|P85801|TRXH_POPJC (e_value=4e-41) Thioredoxin H-type OS=Populus jackii PE=1 SV=1;; (*TAIR) AT3G08710.2 (e_value=4e-40) | Symbols: ATH9, TRX H9, TH9 | thioredoxin H-type 9 | chr3:2645590-2646304 FORWARD LENGTH=140;; (*ITAG) Solyc03g095500.2.1 (e_value=1e-74) genomic_reference:SL2.40ch03 gene_region:50068455-50069523 transcript_region:SL2.40ch03:50068455..50069523+ go_terms:GO:0045454 functional_description:"Thioredoxin h-like protein (AHRD V1 ***- Q8H6X3_TOBAC); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00009674g0006.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|0|0|2|0|98; (*GB) gi|224139500|ref|XP_002323142.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=3e-15) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=2e-16) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc07g065130.2.1 (e_value=3e-26) genomic_reference:SL2.40ch07 gene_region:64254256-64257617 transcript_region:SL2.40ch07:64254256..64257617- go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00009674g0005.1 protein AED:0.55 eAED:0.66 QI:0|0|0|0.5|0|0|2|0|85 NbS00009674g0007.1 protein AED:0.38 eAED:1.00 QI:0|0|0|1|0|0|3|0|72 NbS00024309g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.66|0.5|4|0|1061; (*GB) gi|147818957|emb|CAN67129.1| (e_value=0.0) hypothetical protein VITISV_040170 [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=2e-126) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=2e-127) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00041852g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.4|1|0.25|0.2|5|0|362; (*GB) gi|225443662|ref|XP_002262696.1| (e_value=1e-123) PREDICTED: GDSL esterase/lipase At1g29670 [Vitis vinifera];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=1e-103) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=1e-104) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35634647-35636492 transcript_region:SL2.40ch02:35634647..35636492+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00024885g0019.1 protein AED:0.13 eAED:0.16 QI:0|0|0|1|0.5|0|3|0|217; (*GB) gi|156763850|emb|CAO99127.1| (e_value=6e-115) strictosidine synthase-like protein [Nicotiana tabacum];; (*SWP) sp|Q5ZIF1|APMAP_CHICK (e_value=1e-20) Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1;; (*TAIR) AT3G57030.1 (e_value=5e-69) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc04g040090.2.1 (e_value=2e-102) genomic_reference:SL2.40ch04 gene_region:30930532-30935583 transcript_region:SL2.40ch04:30930532..30935583+ go_terms:GO:0005515,GO:0004064 functional_description:"Strictosidine synthase-like protein (AHRD V1 ***- A7WPL3_TOBAC); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0005515,GO:0004064 NbS00024885g0014.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|1|0.5|2|0|256; (*GB) gi|224139738|ref|XP_002323253.1| (e_value=5e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9HDC9|APMAP_HUMAN (e_value=3e-22) Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2;; (*TAIR) AT3G57030.1 (e_value=2e-61) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=3e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00024885g0013.1 protein AED:0.33 eAED:0.36 QI:0|0|0|0.83|0.2|0.16|6|0|743; (*GB) gi|225423737|ref|XP_002278479.1| (e_value=0.0) PREDICTED: probable splicing factor 3A subunit 1-like [Vitis vinifera];; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=0.0) Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2;; (*TAIR) AT1G14650.2 (e_value=0.0) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | chr1:5028077-5030520 FORWARD LENGTH=785;; (*ITAG) Solyc04g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:451734-456916 transcript_region:SL2.40ch04:451734..456916+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbS00005760g0003.1 protein AED:0.09 eAED:0.09 QI:21|1|1|1|1|1|2|498|274; (*GB) gi|350539451|ref|NP_001234394.1| (e_value=5e-176) phosphoenolpyruvate carboxylase kinase [Solanum lycopersicum];; (*SWP) sp|Q93VK0|PPCK2_ARATH (e_value=1e-104) Phosphoenolpyruvate carboxylase kinase 2 OS=Arabidopsis thaliana GN=PPCK2 PE=1 SV=2;; (*TAIR) AT3G04530.1 (e_value=1e-105) | Symbols: PPCK2, PEPCK2, ATPPCK2 | phosphoenolpyruvate carboxylase kinase 2 | chr3:1221546-1222456 FORWARD LENGTH=278;; (*ITAG) Solyc04g009900.2.1 (e_value=1e-178) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024996g0003.1 protein AED:0.06 eAED:0.06 QI:738|1|0.87|1|0.85|0.75|8|459|1120; (*GB) gi|225426550|ref|XP_002272230.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244469 [Vitis vinifera];; (*TAIR) AT1G32810.2 (e_value=3e-86) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:11881810-11885843 FORWARD LENGTH=1068;; (*ITAG) Solyc08g083290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62958692-62969194 transcript_region:SL2.40ch08:62958692..62969194+ functional_description:"Location of EST 206I21T7 gb|N37185 (AHRD V1 *-*- Q9MAQ7_ARATH)"; NbS00024996g0017.1 protein AED:0.18 eAED:0.18 QI:336|0.78|0.73|1|0.64|0.66|15|0|951; (*GB) gi|359473972|ref|XP_002279130.2| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera];; (*SWP) sp|Q9ZSB5|UBP10_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2;; (*TAIR) AT4G10570.1 (e_value=0.0) | Symbols: UBP9 | ubiquitin-specific protease 9 | chr4:6523657-6528058 REVERSE LENGTH=923;; (*ITAG) Solyc08g083300.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62970183-62979608 transcript_region:SL2.40ch08:62970183..62979608+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9RYW0_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0004197 NbS00024996g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|360|380; (*GB) gi|419789|pir||S31196 (e_value=0.0) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=3e-172) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=3e-173) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc08g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62979638-62981391 transcript_region:SL2.40ch08:62979638..62981391- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00024996g0001.1 protein AED:0.16 eAED:0.16 QI:472|0.83|0.84|1|0.91|0.84|13|0|572; (*GB) gi|267196|sp|Q00775.1|SSG1_SOLTU (e_value=0.0) RecName: Full=Granule-bound starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase I; Short=GBSS-I; Flags: Precursor;; (*SWP) sp|Q00775|SSG1_SOLTU (e_value=0.0) Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1;; (*TAIR) AT1G32900.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:11920582-11923506 REVERSE LENGTH=610;; (*ITAG) Solyc08g083320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62981703-62985075 transcript_region:SL2.40ch08:62981703..62985075- go_terms:GO:0004373,GO:0005515 functional_description:"Granule-bound starch synthase (AHRD V1 **** B0ZTE3_SOLTU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00012112g0001.1 protein AED:0.13 eAED:0.13 QI:444|0.5|0.66|1|0|0.33|3|0|880; (*GB) gi|147799414|emb|CAN76871.1| (e_value=0.0) hypothetical protein VITISV_038835 [Vitis vinifera];; (*SWP) sp|O82175|SUVH5_ARATH (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1;; (*TAIR) AT2G35160.1 (e_value=0.0) | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14823562-14825946 FORWARD LENGTH=794;; (*ITAG) Solyc06g060960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35334184-35337351 transcript_region:SL2.40ch06:35334184..35337351+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00053207g0004.1 protein AED:0.29 eAED:0.29 QI:225|0.76|0.85|0.92|0.76|0.78|14|609|389; (*GB) gi|225430480|ref|XP_002283319.1| (e_value=0.0) PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8RXN4|HIBC5_ARATH (e_value=1e-169) 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1;; (*TAIR) AT4G31810.1 (e_value=8e-171) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387365-15390290 REVERSE LENGTH=409;; (*ITAG) Solyc10g085630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64072673-64081808 transcript_region:SL2.40ch10:64072673..64081808+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 *-*- FADB_PHOLL); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00028507g0003.1 protein AED:0.06 eAED:0.06 QI:209|1|1|1|1|1|9|1079|386; (*GB) gi|85718018|gb|ABC75032.1| (e_value=0.0) UDP-apiose/xylose synthase [Solanum tuberosum];; (*SWP) sp|Q6D2F1|ARNA_ERWCT (e_value=6e-65) Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1;; (*TAIR) AT1G08200.1 (e_value=0.0) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc11g066720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49591441-49595951 transcript_region:SL2.40ch11:49591441..49595951+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0044237,GO:0008152 NbS00037680g0001.1 protein AED:0.00 eAED:0.00 QI:165|1|1|1|0|0.5|2|155|92; (*GB) gi|356525148|ref|XP_003531189.1| (e_value=2e-43) PREDICTED: probable signal peptidase complex subunit 1 [Glycine max];; (*SWP) sp|Q944J0|SPCS1_ARATH (e_value=3e-38) Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1;; (*TAIR) AT4G40042.1 (e_value=1e-39) | Symbols: | Microsomal signal peptidase 12 kDa subunit (SPC12) | chr4:18559289-18559570 FORWARD LENGTH=93;; (*ITAG) Solyc03g005740.1.1 (e_value=4e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:519948-520190 transcript_region:SL2.40ch03:519948..520190- go_terms:GO:0043022 functional_description:"Signal peptidase complex subunit 1 (AHRD V1 ***- B6SJA3_MAIZE); contains Interpro domain(s) IPR009542 Microsomal signal peptidase 12 kDa subunit "; GO:0043022 NbS00037680g0016.1 protein AED:0.11 eAED:0.11 QI:140|0.83|0.84|1|0.83|0.92|13|0|882; (*GB) gi|225465121|ref|XP_002270724.1| (e_value=0.0) PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog [Vitis vinifera];; (*SWP) sp|A4IG72|TGFA1_DANRE (e_value=2e-26) Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1;; (*TAIR) AT1G22860.1 (e_value=0.0) | Symbols: | Vacuolar sorting protein 39 | chr1:8083400-8088867 FORWARD LENGTH=961;; (*ITAG) Solyc05g015210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10037526-10072881 transcript_region:SL2.40ch05:10037526..10072881+ go_terms:GO:0005488 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 **-- TGFA1_MOUSE); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0005488 NbS00037680g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|225425432|ref|XP_002271716.1| (e_value=2e-51) PREDICTED: nuclear transcription factor Y subunit gamma [Vitis vinifera];; (*TAIR) AT5G43250.1 (e_value=1e-45) | Symbols: NF-YC13 | nuclear factor Y, subunit C13 | chr5:17356174-17356566 REVERSE LENGTH=130;; (*ITAG) Solyc05g015330.1.1 (e_value=8e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:10362181-10362615 transcript_region:SL2.40ch05:10362181..10362615- go_terms:GO:0046982 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **-- B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0046982 NbS00037680g0015.1 protein AED:0.12 eAED:0.12 QI:202|0.8|0.66|1|1|1|6|0|503; (*GB) gi|255547744|ref|XP_002514929.1| (e_value=0.0) GTP binding protein, putative [Ricinus communis];; (*SWP) sp|Q3MG79|RSGA_ANAVT (e_value=8e-82) Putative ribosome biogenesis GTPase RsgA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rsgA PE=3 SV=1;; (*TAIR) AT1G67440.1 (e_value=0.0) | Symbols: emb1688 | Minichromosome maintenance (MCM2/3/5) family protein | chr1:25263905-25265551 REVERSE LENGTH=433;; (*ITAG) Solyc05g015310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10346862-10351098 transcript_region:SL2.40ch05:10346862..10351098+ go_terms:GO:0043022,GO:0005515 functional_description:"Ribosome-associated GTPase (AHRD V1 **** A3IKD0_9CHRO); contains Interpro domain(s) IPR004881 GTPase EngC "; GO:0043022,GO:0005515 NbS00024868g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.83|1|1|1|6|340|240; (*GB) gi|445613|prf||1909359B (e_value=3e-137) ribosomal protein L7;; (*SWP) sp|P60039|RL73_ARATH (e_value=4e-133) 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1;; (*TAIR) AT2G44120.1 (e_value=3e-134) | Symbols: | Ribosomal protein L30/L7 family protein | chr2:18249227-18250402 REVERSE LENGTH=242;; (*ITAG) Solyc12g096220.1.1 (e_value=6e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63577374-63583356 transcript_region:SL2.40ch12:63577374..63583356+ go_terms:GO:0005840,GO:0015934,GO:0005089 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7LR12_ARALY); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005840,GO:0015934,GO:0005089 NbS00024868g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.33|1|0.8|0.66|6|0|415; (*GB) gi|359474736|ref|XP_002273482.2| (e_value=3e-157) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=2e-75) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT1G31650.1 (e_value=4e-141) | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide exchange factor 14 | chr1:11326474-11329767 REVERSE LENGTH=576;; (*ITAG) Solyc12g096220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63577374-63583356 transcript_region:SL2.40ch12:63577374..63583356+ go_terms:GO:0005840,GO:0015934,GO:0005089 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7LR12_ARALY); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005840,GO:0015934,GO:0005089 NbS00024868g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|125; (*GB) gi|296089224|emb|CBI38996.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SA82|BH052_ARATH (e_value=9e-19) Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1;; (*TAIR) AT1G30670.1 (e_value=7e-20) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10879311-10880188 REVERSE LENGTH=264;; (*ITAG) Solyc08g075110.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56431587-56432571 transcript_region:SL2.40ch08:56431587..56432571- go_terms:GO:0003700 functional_description:"Transcription factor LAX PANICLE (AHRD V1 *--* LAX_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00004971g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.87|1|0.85|1|8|239|482; (*GB) gi|225432704|ref|XP_002278798.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254579 [Vitis vinifera];; (*TAIR) AT2G32040.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:13635116-13637592 FORWARD LENGTH=560;; (*ITAG) Solyc06g054120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33431058-33439707 transcript_region:SL2.40ch06:33431058..33439707+ go_terms:GO:0015231 functional_description:"Folate/biopterin transporter family protein expressed (AHRD V1 **** Q10C46_ORYSJ); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0015231 NbS00019954g0008.1 protein AED:0.09 eAED:0.09 QI:111|0.91|0.76|1|0.91|0.84|13|292|1002; (*GB) gi|359483534|ref|XP_002269610.2| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Vitis vinifera];; (*SWP) sp|Q8LPK5|CESA8_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1;; (*TAIR) AT4G18780.1 (e_value=0.0) | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose synthase family protein | chr4:10312846-10316719 REVERSE LENGTH=985;; (*ITAG) Solyc02g072240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36127210-36131873 transcript_region:SL2.40ch02:36127210..36131873+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6J8W9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00019954g0007.1 protein AED:0.22 eAED:0.22 QI:53|1|1|1|0.8|0.90|11|611|374; (*GB) gi|359483534|ref|XP_002269610.2| (e_value=7e-160) PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Vitis vinifera];; (*SWP) sp|Q32KQ2|WDR53_BOVIN (e_value=6e-28) WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1;; (*TAIR) AT5G45760.1 (e_value=2e-158) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:18561121-18563005 FORWARD LENGTH=360;; (*ITAG) Solyc02g072230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36118068-36126069 transcript_region:SL2.40ch02:36118068..36126069+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2IZJ6_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00019954g0012.1 protein AED:0.03 eAED:0.07 QI:0|0|0|1|0.25|0|5|0|548; (*GB) gi|356525302|ref|XP_003531264.1| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100814411 [Glycine max];; (*TAIR) AT2G42760.1 (e_value=5e-17) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc02g072210.1.1 (e_value=1e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:36103196-36103873 transcript_region:SL2.40ch02:36103196..36103873+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029945g0003.1 protein AED:0.22 eAED:0.30 QI:174|0.57|0.75|0.87|0.57|0.62|8|290|292; (*GB) gi|9651810|gb|AAF91282.1|AF233342_1 (e_value=3e-115) DNA-binding protein p24 [Solanum tuberosum];; (*TAIR) AT1G14410.1 (e_value=5e-75) | Symbols: ATWHY1, PTAC1, WHY1 | ssDNA-binding transcriptional regulator | chr1:4929352-4930810 REVERSE LENGTH=263;; (*ITAG) Solyc05g007100.2.1 (e_value=3e-109) genomic_reference:SL2.40ch05 gene_region:1672964-1676481 transcript_region:SL2.40ch05:1672964..1676481+ go_terms:GO:0042162 functional_description:"DNA-binding protein p24 (AHRD V1 **-* Q9LL85_SOLTU); contains Interpro domain(s) IPR013742 Plant transcription factor "; GO:0042162 NbS00015632g0001.1 protein AED:0.30 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|163; (*GB) gi|225433500|ref|XP_002265736.1| (e_value=6e-33) PREDICTED: cysteine proteinase inhibitor 2-like [Vitis vinifera];; (*SWP) sp|P0C579|CYT10_ORYSJ (e_value=2e-27) Cysteine proteinase inhibitor 10 OS=Oryza sativa subsp. japonica GN=Os04g0350100 PE=2 SV=1;; (*TAIR) AT2G31980.1 (e_value=7e-23) | Symbols: AtCYS2, CYS2 | PHYTOCYSTATIN 2 | chr2:13609246-13609770 REVERSE LENGTH=147;; (*ITAG) Solyc09g097850.1.1 (e_value=6e-42) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:67115465-67115869 transcript_region:SL2.40ch09:67115465..67115869- go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 ***- A7L2Z3_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004869 NbS00047250g0008.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|1|1|2|0|443; (*GB) gi|224077352|ref|XP_002305224.1| (e_value=2e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5PNY6|PUB21_ARATH (e_value=4e-116) U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1;; (*TAIR) AT5G37490.1 (e_value=3e-117) | Symbols: | ARM repeat superfamily protein | chr5:14887744-14889051 FORWARD LENGTH=435;; (*ITAG) Solyc11g006030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:840424-841716 transcript_region:SL2.40ch11:840424..841716- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00047250g0003.1 protein AED:0.17 eAED:0.17 QI:285|0|0.66|1|1|1|3|163|835; (*GB) gi|224077350|ref|XP_002305223.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc11g006040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:846032-849515 transcript_region:SL2.40ch11:846032..849515- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00014655g0003.1 protein AED:0.39 eAED:0.42 QI:0|0.7|0.72|0.90|1|1|11|0|304; (*GB) gi|76573311|gb|ABA46760.1| (e_value=0.0) vacuolar protein sorting-associated protein 26-like protein [Solanum tuberosum];; (*SWP) sp|Q9FJD0|VP26A_ARATH (e_value=3e-179) Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1;; (*TAIR) AT5G53530.1 (e_value=2e-180) | Symbols: VPS26A | vacuolar protein sorting 26A | chr5:21746275-21748156 REVERSE LENGTH=302;; (*ITAG) Solyc04g050240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:45455420-45471463 transcript_region:SL2.40ch04:45455420..45471463- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 26-like protein (AHRD V1 ***- Q3HRZ1_SOLTU); contains Interpro domain(s) IPR005377 Vacuolar protein sorting-associated protein 26 "; GO:0005515 NbS00014655g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|147775528|emb|CAN62880.1| (e_value=0.0) hypothetical protein VITISV_000844 [Vitis vinifera];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=1e-63) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT3G09570.1 (e_value=8e-141) | Symbols: | Lung seven transmembrane receptor family protein | chr3:2940524-2941843 FORWARD LENGTH=439;; (*ITAG) Solyc04g050260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:45502931-45504304 transcript_region:SL2.40ch04:45502931..45504304+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00014655g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|124; (*ITAG) Solyc04g050310.2.1 (e_value=4e-41) genomic_reference:SL2.40ch04 gene_region:45704048-45704742 transcript_region:SL2.40ch04:45704048..45704742- functional_description:"Unknown Protein (AHRD V1)"; NbS00057171g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.88|1|1|1|9|0|889; (*GB) gi|46389755|dbj|BAD15108.1| (e_value=0.0) ALG2-interacting protein X [Nicotiana tabacum];; (*SWP) sp|Q8T7K0|ALIX_DICDI (e_value=3e-72) ALG-2 interacting protein X OS=Dictyostelium discoideum GN=alxA PE=1 SV=1;; (*TAIR) AT1G15130.1 (e_value=0.0) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:5206217-5209848 REVERSE LENGTH=846;; (*ITAG) Solyc05g008430.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2784339-2792207 transcript_region:SL2.40ch05:2784339..2792207- functional_description:"pH-response regulator protein palA/RIM20 (AHRD V1 **-- C5FER8_NANOT); contains Interpro domain(s) IPR004328 BRO1 "; NbS00001559g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|671; (*GB) gi|359491213|ref|XP_003634242.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: L-type lectin-domain containing receptor kinase S.1-like [Vitis vinifera];; (*SWP) sp|Q9M9E0|LRKS1_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana GN=LECRKS1 PE=1 SV=1;; (*TAIR) AT1G15530.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr1:5339961-5341931 REVERSE LENGTH=656;; (*ITAG) Solyc03g112310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56806587-56808575 transcript_region:SL2.40ch03:56806587..56808575+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00001559g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|157; (*GB) gi|3608481|gb|AAD13388.1| (e_value=4e-93) ribosomal protein L27a [Petunia x hybrida];; (*SWP) sp|P49637|R27A3_ARATH (e_value=3e-84) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=2e-85) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc03g112360.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56836935-56837381 transcript_region:SL2.40ch03:56836935..56837381+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00001559g0020.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|4|256|216; (*GB) gi|255540535|ref|XP_002511332.1| (e_value=3e-83) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G47740.1 (e_value=4e-41) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=244;; (*ITAG) Solyc03g112330.2.1 (e_value=8e-117) genomic_reference:SL2.40ch03 gene_region:56815336-56817659 transcript_region:SL2.40ch03:56815336..56817659+ go_terms:GO:0006950 functional_description:"U-box domain-containing protein 33 (AHRD V1 ***- PUB33_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00001559g0021.1 protein AED:0.25 eAED:0.31 QI:138|0.5|0.53|1|0.85|0.93|15|300|837; (*GB) gi|356513635|ref|XP_003525517.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 30-like [Glycine max];; (*SWP) sp|Q8W4R3|RH30_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2;; (*TAIR) AT5G63120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25319798-25322071 REVERSE LENGTH=484;; (*ITAG) Solyc03g112350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56827497-56836249 transcript_region:SL2.40ch03:56827497..56836249+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00001559g0008.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|636; (*GB) gi|296278610|gb|ADH04269.1| (e_value=0.0) MYC2a transcription factor [Nicotiana tabacum];; (*SWP) sp|Q39204|RAP1_ARATH (e_value=0.0) Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2;; (*TAIR) AT1G32640.1 (e_value=0.0) | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623;; (*ITAG) Solyc08g076930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58035870-58037939 transcript_region:SL2.40ch08:58035870..58037939+ go_terms:GO:0016563,GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00001559g0003.1 protein AED:0.17 eAED:0.17 QI:411|0.71|0.87|1|0.71|0.62|8|920|346; (*GB) gi|224133654|ref|XP_002321628.1| (e_value=4e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VY13|FRO8_ARATH (e_value=2e-52) Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1;; (*TAIR) AT5G50160.1 (e_value=2e-53) | Symbols: ATFRO8, FRO8 | ferric reduction oxidase 8 | chr5:20415832-20418582 FORWARD LENGTH=728;; (*ITAG) Solyc03g112320.2.1 (e_value=3e-104) genomic_reference:SL2.40ch03 gene_region:56809755-56812064 transcript_region:SL2.40ch03:56809755..56812064- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **** D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00021485g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0.33|0.66|1|1|3|0|150; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=6e-49) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=2e-50) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=2e-43) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=8e-51) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00004594g0004.1 protein AED:0.00 eAED:0.07 QI:0|1|0|1|1|1|2|0|606; (*GB) gi|60752251|gb|AAX36074.1| (e_value=0.0) non-intrinsic ABC protein [Nicotiana benthamiana];; (*SWP) sp|Q9ZS97|AB8I_ARATH (e_value=0.0) UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1;; (*TAIR) AT4G04770.1 (e_value=0.0) | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding cassette protein 1 | chr4:2427998-2429785 REVERSE LENGTH=557;; (*ITAG) Solyc02g080440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39231799-39236517 transcript_region:SL2.40ch02:39231799..39236517+ go_terms:GO:0005515 functional_description:"FeS assembly protein SufB (AHRD V1 ***- Q3MG36_ANAVT); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB "; GO:0005515 NbS00020521g0005.1 protein AED:0.00 eAED:0.00 QI:997|1|1|1|1|1|2|372|78; (*GB) gi|388513069|gb|AFK44596.1| (e_value=1e-28) unknown [Lotus japonicus];; (*TAIR) AT5G09960.1 (e_value=1e-30) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112;; (*ITAG) Solyc04g051820.2.1 (e_value=5e-36) genomic_reference:SL2.40ch04 gene_region:50279334-50282705 transcript_region:SL2.40ch04:50279334..50282705+ functional_description:"Os03g0169900 protein (Fragment) (AHRD V1 ***- Q0DUS0_ORYSJ)"; NbS00020521g0008.1 protein AED:0.13 eAED:0.14 QI:0|0.8|0.66|1|0.8|0.66|6|335|234; (*GB) gi|357464409|ref|XP_003602486.1| (e_value=9e-166) Developmentally regulated GTP binding protein [Medicago truncatula];; (*SWP) sp|P43690|DRG1_XENLA (e_value=3e-120) Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis GN=drg1 PE=2 SV=1;; (*TAIR) AT4G39520.1 (e_value=8e-161) | Symbols: | GTP-binding protein-related | chr4:18371329-18374000 REVERSE LENGTH=369;; (*ITAG) Solyc04g051830.2.1 (e_value=5e-175) genomic_reference:SL2.40ch04 gene_region:50286084-50298122 transcript_region:SL2.40ch04:50286084..50298122- go_terms:GO:0008134 functional_description:"Developmentally regulated GTP binding protein 1 (AHRD V1 **-* A8WE95_PEA); contains Interpro domain(s) IPR004095 TGS "; GO:0008134 NbS00060755g0003.1 protein AED:0.09 eAED:0.09 QI:457|1|1|1|1|1|3|184|258; (*GB) gi|445113|prf||1908418A (e_value=2e-130) acid phosphatase 1;; (*SWP) sp|P27061|PPA1_SOLLC (e_value=1e-131) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=5e-119) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc03g093470.2.1 (e_value=7e-158) genomic_reference:SL2.40ch03 gene_region:48203734-48206902 transcript_region:SL2.40ch03:48203734..48206902- go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00040764g0006.1 protein AED:0.60 eAED:0.72 QI:86|0|0|0.25|1|0.75|4|0|32 NbS00040764g0008.1 protein AED:0.02 eAED:0.02 QI:419|1|1|1|0|0.5|2|147|298; (*GB) gi|225427940|ref|XP_002275899.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100262348 [Vitis vinifera];; (*TAIR) AT4G38710.2 (e_value=3e-25) | Symbols: | glycine-rich protein | chr4:18078141-18080002 REVERSE LENGTH=465;; (*ITAG) Solyc01g111200.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:89298730-89301282 transcript_region:SL2.40ch01:89298730..89301282+ go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 4B (AHRD V1 **** Q9AUJ7_WHEAT); contains Interpro domain(s) IPR010433 Plant specific eukaryotic initiation factor 4B "; GO:0003743 NbS00040764g0007.1 protein AED:0.10 eAED:0.10 QI:80|0.5|0.66|1|1|1|3|202|236; (*GB) gi|255574712|ref|XP_002528264.1| (e_value=1e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G16630.1 (e_value=2e-45) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:7209286-7210872 FORWARD LENGTH=359;; (*ITAG) Solyc01g111210.2.1 (e_value=2e-79) genomic_reference:SL2.40ch01 gene_region:89303121-89308860 transcript_region:SL2.40ch01:89303121..89308860+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B6JZE9_SCHJY); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00042574g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|1|0.5|0|3|0|313; (*GB) gi|296084935|emb|CBI28344.3| (e_value=5e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94EJ2|HDA8_ARATH (e_value=1e-147) Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1;; (*TAIR) AT1G08460.1 (e_value=9e-149) | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377;; (*ITAG) Solyc06g074080.2.1 (e_value=3e-175) genomic_reference:SL2.40ch06 gene_region:42180141-42183230 transcript_region:SL2.40ch06:42180141..42183230- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9HPV0_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0003714 NbS00010622g0011.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|0.85|0.62|8|0|348; (*GB) gi|225445001|ref|XP_002279951.1| (e_value=8e-131) PREDICTED: uncharacterized protein LOC100257820 [Vitis vinifera];; (*TAIR) AT4G29400.1 (e_value=1e-120) | Symbols: | Protein of unknown function (DUF3531) | chr4:14466350-14467980 FORWARD LENGTH=302;; (*ITAG) Solyc10g045310.1.1 (e_value=2e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28141844-28144088 transcript_region:SL2.40ch10:28141844..28144088- functional_description:"Oxidoreductase/ transition metal ion binding protein (AHRD V1 **-- D7MCM0_ARALY)"; NbS00010622g0010.1 protein AED:0.17 eAED:0.17 QI:0|1|0.87|1|0.85|0.87|8|284|491; (*GB) gi|3914467|sp|P93768.1|PSMD3_TOBAC (e_value=0.0) RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 3; Short=26S proteasome subunit S3; AltName: Full=26S proteasome regulatory subunit RPN3; AltName: Full=Nuclear antigen 21D7;; (*SWP) sp|P93768|PSMD3_TOBAC (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1;; (*TAIR) AT1G20200.1 (e_value=0.0) | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488;; (*ITAG) Solyc01g111710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89651034-89655488 transcript_region:SL2.40ch01:89651034..89655488- go_terms:GO:0005515 functional_description:"26S proteasome non-ATPase regulatory subunit 3 (AHRD V1 ***- B6TBG8_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515 NbS00008453g0109.1 protein AED:0.28 eAED:0.44 QI:0|0|0|0.66|0.5|0.33|3|0|219 NbS00016013g0004.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|0.66|3|0|319; (*GB) gi|255555327|ref|XP_002518700.1| (e_value=0.0) DNA-directed RNA polymerase II subunit, putative [Ricinus communis];; (*SWP) sp|Q39211|RPB3A_ARATH (e_value=0.0) DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1;; (*TAIR) AT2G15430.1 (e_value=0.0) | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | DNA-directed RNA polymerase family protein | chr2:6733661-6735482 FORWARD LENGTH=319;; (*ITAG) Solyc05g010300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4454979-4460526 transcript_region:SL2.40ch05:4454979..4460526+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit 3 (AHRD V1 ***- A4RSP9_OSTLU); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type "; GO:0006350 NbS00032455g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|100; (*ITAG) Solyc11g006880.1.1 (e_value=4e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1417654-1420489 transcript_region:SL2.40ch11:1417654..1420489- functional_description:"Genomic DNA chromosome 5 TAC clone K17N15 (AHRD V1 **-- Q9FHN3_ARATH); contains Interpro domain(s) IPR009787 Protein of unknown function DUF1352 "; NbS00017201g0004.1 protein AED:0.01 eAED:0.01 QI:122|1|1|1|0.5|0.8|5|509|378; (*GB) gi|225440538|ref|XP_002275792.1| (e_value=4e-52) PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera];; (*ITAG) Solyc10g084970.1.1 (e_value=7e-119) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63649834-63651609 transcript_region:SL2.40ch10:63649834..63651609+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027293g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|224101833|ref|XP_002334238.1| (e_value=3e-63) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8LBQ7|ERF34_ARATH (e_value=1e-55) Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2;; (*TAIR) AT2G44940.1 (e_value=1e-56) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295;; (*ITAG) Solyc01g090560.2.1 (e_value=7e-102) genomic_reference:SL2.40ch01 gene_region:75989194-75990408 transcript_region:SL2.40ch01:75989194..75990408+ go_terms:GO:0005125,GO:0005138 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005125,GO:0005138 NbS00043179g0013.1 protein AED:0.02 eAED:0.02 QI:46|1|0.75|1|0.66|1|4|0|237; (*GB) gi|297734552|emb|CBI16603.3| (e_value=6e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|B6SGC5|CNR6_MAIZE (e_value=9e-88) Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1;; (*TAIR) AT2G45010.1 (e_value=6e-89) | Symbols: | PLAC8 family protein | chr2:18568045-18569615 FORWARD LENGTH=244;; (*ITAG) Solyc10g018920.1.1 (e_value=2e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:10832161-10833759 transcript_region:SL2.40ch10:10832161..10833759- functional_description:"Cell number regulator 6 (AHRD V1 **-- B6SGC5_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00043179g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|240; (*GB) gi|255545596|ref|XP_002513858.1| (e_value=1e-53) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*TAIR) AT1G36310.2 (e_value=1e-42) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:13669644-13670934 FORWARD LENGTH=404;; (*ITAG) Solyc04g072390.2.1 (e_value=3e-107) genomic_reference:SL2.40ch04 gene_region:57012675-57014952 transcript_region:SL2.40ch04:57012675..57014952+ go_terms:GO:0008152 functional_description:"Alkylated DNA repair protein alkB 8 (AHRD V1 *--- D0MUQ0_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00043179g0016.1 protein AED:0.12 eAED:0.13 QI:43|0.6|0.45|0.90|0.7|0.72|11|41|719; (*GB) gi|225447456|ref|XP_002266728.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=0.0) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00029654g0003.1 protein AED:0.20 eAED:0.20 QI:457|1|1|1|0.66|0.71|7|56|219; (*GB) gi|95103172|gb|ABF51526.1| (e_value=6e-70) MADS box transcription factor [Populus tomentosa];; (*SWP) sp|Q9XJ60|MAD50_ORYSJ (e_value=4e-61) MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1;; (*TAIR) AT2G45660.1 (e_value=8e-62) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc12g056460.1.1 (e_value=4e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47762844-47771707 transcript_region:SL2.40ch12:47762844..47771707+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00009109g0002.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|495; (*GB) gi|359477709|ref|XP_002280801.2| (e_value=1e-167) PREDICTED: uncharacterized protein LOC100242465 [Vitis vinifera];; (*TAIR) AT3G23160.1 (e_value=4e-135) | Symbols: | Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531;; (*ITAG) Solyc09g089640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64742886-64745198 transcript_region:SL2.40ch09:64742886..64745198- functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEX0_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00009109g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.75|0.4|0.8|1|0.8|5|0|124; (*GB) gi|30682860|ref|NP_849384.1| (e_value=3e-50) Bet1-like SNARE 1-2 [Arabidopsis thaliana];; (*SWP) sp|Q94CG2|BET12_ARATH (e_value=9e-52) Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4;; (*TAIR) AT4G14455.1 (e_value=7e-53) | Symbols: ATBET12, BET12, ATBS14B, BS14B | Target SNARE coiled-coil domain protein | chr4:8310482-8311938 FORWARD LENGTH=130;; (*ITAG) Solyc09g089630.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:64735134-64741764 transcript_region:SL2.40ch09:64735134..64741764- go_terms:GO:0005484 functional_description:"BET1 (AHRD V1 ***- B6U0C6_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00011069g0007.1 protein AED:0.09 eAED:0.10 QI:0|1|0.8|1|1|1|5|1978|320; (*GB) gi|13278055|gb|AAH03883.1| (e_value=2e-131) CDNA sequence BC003883 [Mus musculus];; (*SWP) sp|Q9FMY5|U2AFB_ARATH (e_value=9e-105) Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=7e-106) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc11g066830.1.1 (e_value=1e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00011069g0002.1 protein AED:0.14 eAED:0.14 QI:205|0.75|0.77|1|1|1|9|416|256; (*GB) gi|78191430|gb|ABB29936.1| (e_value=4e-67) deacetylase-like protein [Solanum tuberosum];; (*SWP) sp|Q9FVE6|HDT1_ARATH (e_value=1e-32) Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1;; (*TAIR) AT3G44750.2 (e_value=1e-33) | Symbols: HDA3 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=242;; (*ITAG) Solyc11g066840.1.1 (e_value=3e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49732490-49734800 transcript_region:SL2.40ch11:49732490..49734800- functional_description:"Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU)"; NbS00024026g0010.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|0.5|2|0|73; (*GB) gi|255545552|ref|XP_002513836.1| (e_value=1e-43) Transmembrane protein 50A, putative [Ricinus communis];; (*TAIR) AT1G36980.1 (e_value=8e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:14025084-14026727 FORWARD LENGTH=135;; (*ITAG) Solyc11g013550.1.1 (e_value=1e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6653847-6662041 transcript_region:SL2.40ch11:6653847..6662041+ functional_description:"Transmembrane protein 50A (AHRD V1 ***- B6SZ92_MAIZE); contains Interpro domain(s) IPR007919 Uncharacterised protein family UPF0220 "; NbS00024026g0007.1 protein AED:0.33 eAED:0.68 QI:0|0|0|1|1|1|3|0|191; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00028592g0002.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.78|0.94|1|1|19|0|852; (*GB) gi|297733786|emb|CBI15033.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=0.0) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=0.0) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57288489-57309276 transcript_region:SL2.40ch03:57288489..57309276+ functional_description:"Serine/threonine-protein kinase ATM (AHRD V1 ***- ATM_ARATH)"; NbS00028592g0007.1 protein AED:0.48 eAED:0.63 QI:141|0|0.16|0.33|0.8|0.83|6|0|219; (*GB) gi|7529272|emb|CAB86487.1| (e_value=2e-51) ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=6e-53) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=5e-54) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112940.2.1 (e_value=3e-78) genomic_reference:SL2.40ch03 gene_region:57288489-57309276 transcript_region:SL2.40ch03:57288489..57309276+ functional_description:"Serine/threonine-protein kinase ATM (AHRD V1 ***- ATM_ARATH)"; NbS00014370g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.88|0.83|1|0.88|0.88|18|135|805; (*GB) gi|255549852|ref|XP_002515977.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0.0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.1 (e_value=0.0) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836;; (*ITAG) Solyc12g044410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44793673-44801092 transcript_region:SL2.40ch12:44793673..44801092+ go_terms:GO:0006355,GO:0045449 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0006355,GO:0045449 NbS00018295g0003.1 protein AED:0.29 eAED:0.36 QI:0|0.85|0.75|1|1|1|8|0|331; (*GB) gi|225423479|ref|XP_002267076.1| (e_value=0.0) PREDICTED: erlin-2-B [Vitis vinifera];; (*SWP) sp|Q5R7C5|ERLN2_PONAB (e_value=2e-123) Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1;; (*TAIR) AT2G03510.1 (e_value=0.0) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr2:1066717-1068934 FORWARD LENGTH=356;; (*ITAG) Solyc05g012340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5601824-5605948 transcript_region:SL2.40ch05:5601824..5605948- go_terms:GO:0005515 functional_description:"Erlin-2 (AHRD V1 ***- D3PHE1_9MAXI); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00002419g0013.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.6|1|0.5|0.4|5|480|169; (*GB) gi|317159557|gb|ADV04053.1| (e_value=3e-62) eukaryotic translation initiation factor 2 [Hevea brasiliensis];; (*SWP) sp|Q9SM41|SUI1_SPOST (e_value=2e-60) Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1;; (*TAIR) AT4G27130.1 (e_value=1e-60) | Symbols: | Translation initiation factor SUI1 family protein | chr4:13604814-13605525 REVERSE LENGTH=113;; (*ITAG) Solyc03g031810.2.1 (e_value=1e-65) genomic_reference:SL2.40ch03 gene_region:8567346-8568792 transcript_region:SL2.40ch03:8567346..8568792- go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** Q7RQ93_PLAYO); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00002419g0014.1 protein AED:0.18 eAED:0.18 QI:264|0.81|0.83|1|0.81|0.83|12|134|509; (*GB) gi|302144065|emb|CBI23170.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NUW8|TYDP1_HUMAN (e_value=1e-45) Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2;; (*TAIR) AT5G15170.1 (e_value=0.0) | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related | chr5:4926300-4929307 REVERSE LENGTH=605;; (*ITAG) Solyc03g031820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8570866-8581903 transcript_region:SL2.40ch03:8570866..8581903- go_terms:GO:0017005 functional_description:"Tyrosyl-DNA phosphodiesterase 1 (AHRD V1 **** B8JJC1_MOUSE); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0017005 NbS00002419g0009.1 protein AED:0.49 eAED:0.54 QI:0|0.5|0|0.6|1|1|5|0|150; (*GB) gi|302144065|emb|CBI23170.3| (e_value=3e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4G056|TYDP1_RAT (e_value=1e-26) Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1;; (*TAIR) AT5G15170.1 (e_value=4e-62) | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related | chr5:4926300-4929307 REVERSE LENGTH=605;; (*ITAG) Solyc03g031820.2.1 (e_value=5e-89) genomic_reference:SL2.40ch03 gene_region:8570866-8581903 transcript_region:SL2.40ch03:8570866..8581903- go_terms:GO:0017005 functional_description:"Tyrosyl-DNA phosphodiesterase 1 (AHRD V1 **** B8JJC1_MOUSE); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0017005 NbS00048575g0005.1 protein AED:0.33 eAED:0.34 QI:0|0.25|0.4|1|1|1|5|414|231; (*GB) gi|1419090|emb|CAA64422.1| (e_value=2e-134) 37kDa chloroplast inner envelope membrane polypeptide precursor [Nicotiana tabacum];; (*SWP) sp|P23525|IN37_SPIOL (e_value=1e-111) 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G63410.1 (e_value=7e-109) | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:23415816-23417002 REVERSE LENGTH=338;; (*ITAG) Solyc03g005230.2.1 (e_value=5e-132) genomic_reference:SL2.40ch03 gene_region:132905-138964 transcript_region:SL2.40ch03:132905..138964+ go_terms:GO:0051741 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-** A1BDQ8_CHLPD); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0051741 NbS00010041g0001.1 protein AED:0.02 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|583; (*GB) gi|336169731|gb|AEI25530.1| (e_value=0.0) gibberellic acid insensitive protein [Solanum tuberosum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=0.0) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=0.0) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00014283g0001.1 protein AED:0.03 eAED:0.04 QI:0|0|0.5|1|0|0.5|2|409|165; (*GB) gi|255639727|gb|ACU20157.1| (e_value=5e-23) unknown [Glycine max];; (*TAIR) AT1G69760.1 (e_value=3e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26920.1); Has 51 Blast hits to 51 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:26240094-26240627 REVERSE LENGTH=177;; (*ITAG) Solyc05g007240.1.1 (e_value=5e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:1896460-1896984 transcript_region:SL2.40ch05:1896460..1896984+ functional_description:"TO109-12 (Fragment) (AHRD V1 *-*- Q3LVG1_TAROF)"; NbS00027998g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|518; (*GB) gi|257195252|gb|ACV49899.1| (e_value=0.0) glyoxal oxidase [Vitis vinifera];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=1e-16) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT3G53950.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr3:19975704-19977341 FORWARD LENGTH=545;; (*ITAG) Solyc10g086650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64753489-64755099 transcript_region:SL2.40ch10:64753489..64755099- functional_description:"Glyoxal oxidase (AHRD V1 ***- C8CPQ3_VITVI); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00030690g0010.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|438; (*GB) gi|225454058|ref|XP_002264761.1| (e_value=1e-156) PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera];; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=3e-48) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=2e-49) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g080920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72772977-72774597 transcript_region:SL2.40ch01:72772977..72774597+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- A8IXJ0_BRACM); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00030690g0011.1 protein AED:0.22 eAED:0.29 QI:86|0.7|0.45|0.90|0.4|0.45|11|0|236; (*GB) gi|297794417|ref|XP_002865093.1| (e_value=3e-99) beta-hydroxyisobutyryl-CoA hydrolase 1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LKJ1|HIBC1_ARATH (e_value=6e-99) 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1;; (*TAIR) AT5G65940.3 (e_value=9e-101) | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | chr5:26376927-26379161 REVERSE LENGTH=342;; (*ITAG) Solyc01g108800.2.1 (e_value=6e-112) genomic_reference:SL2.40ch01 gene_region:87741775-87749641 transcript_region:SL2.40ch01:87741775..87749641+ go_terms:GO:0003860 functional_description:"3-hydroxyisobutyryl-CoA hydrolase (AHRD V1 **** D3NUG5_AZOS1); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0003860 NbS00052038g0004.1 protein AED:0.33 eAED:0.33 QI:18|0.8|0.83|1|0.4|0.33|6|171|260; (*GB) gi|296084363|emb|CBI24751.3| (e_value=4e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WP12|HOL1_ARATH (e_value=3e-68) Thiocyanate methyltransferase 1 OS=Arabidopsis thaliana GN=HOL1 PE=1 SV=1;; (*TAIR) AT2G43910.2 (e_value=2e-69) | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER 1 | chr2:18184596-18186951 REVERSE LENGTH=246;; (*ITAG) Solyc08g014600.2.1 (e_value=4e-99) genomic_reference:SL2.40ch08 gene_region:4711061-4717787 transcript_region:SL2.40ch08:4711061..4717787- go_terms:GO:0018708 functional_description:"Thiopurine S-methyltransferase family protein expressed (AHRD V1 **** Q10AR3_ORYSJ); contains Interpro domain(s) IPR008854 Thiopurine S-methyltransferase "; GO:0018708 NbS00052038g0005.1 protein AED:0.06 eAED:0.06 QI:362|1|0.75|1|1|1|4|0|177; (*GB) gi|225447834|ref|XP_002270590.1| (e_value=1e-78) PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2 [Vitis vinifera];; (*SWP) sp|Q9FY89|VP202_ARATH (e_value=1e-77) Vacuolar protein sorting-associated protein 20 homolog 2 OS=Arabidopsis thaliana GN=VPS20.2 PE=1 SV=1;; (*TAIR) AT5G09260.1 (e_value=9e-79) | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876797-2878355 FORWARD LENGTH=216;; (*ITAG) Solyc12g096650.1.1 (e_value=7e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63815334-63820210 transcript_region:SL2.40ch12:63815334..63820210+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 6 (AHRD V1 **-- B6TFV6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00003038g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.2|0.16|0.83|0.4|0.66|6|0|1445; (*GB) gi|297734072|emb|CBI15319.3| (e_value=2e-90) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YYC0|C3H55_ORYSJ (e_value=3e-19) Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1;; (*TAIR) AT3G26850.2 (e_value=1e-33) | Symbols: | histone-lysine N-methyltransferases | chr3:9896541-9897415 REVERSE LENGTH=265;; (*ITAG) Solyc06g069440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39580517-39588810 transcript_region:SL2.40ch06:39580517..39588810+ functional_description:"Zinc finger CCCH domain-containing protein 55 (AHRD V1 *-*- C3H55_ORYSJ)"; NbS00003038g0014.1 protein AED:0.23 eAED:0.30 QI:0|0.2|0.16|1|0.4|0.33|6|0|563; (*GB) gi|225456581|ref|XP_002265588.1| (e_value=2e-44) PREDICTED: uncharacterized protein LOC100263840 [Vitis vinifera];; (*TAIR) AT4G26190.1 (e_value=2e-30) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:13262473-13266282 REVERSE LENGTH=1057;; (*ITAG) Solyc06g069450.2.1 (e_value=1e-179) genomic_reference:SL2.40ch06 gene_region:39591191-39595475 transcript_region:SL2.40ch06:39591191..39595475+ functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01A04_OSTTA); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00011481g0021.1 protein AED:0.26 eAED:0.26 QI:148|0.66|0.5|1|1|1|4|0|334; (*GB) gi|118778687|ref|XP_308799.3| (e_value=2e-154) AGAP006959-PA [Anopheles gambiae str. PEST];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=3e-142) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=2e-142) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc07g065840.2.1 (e_value=2e-143) genomic_reference:SL2.40ch07 gene_region:64658676-64662396 transcript_region:SL2.40ch07:64658676..64662396- go_terms:GO:0042623 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623 NbS00011481g0022.1 protein AED:0.25 eAED:0.27 QI:24|0.8|0.66|1|0.8|0.83|6|213|204; (*GB) gi|356563326|ref|XP_003549915.1| (e_value=3e-71) PREDICTED: protein CWC15 homolog [Glycine max];; (*SWP) sp|Q6NUB2|CW15A_XENLA (e_value=3e-19) Protein CWC15 homolog A OS=Xenopus laevis GN=cwc15-a PE=2 SV=1;; (*TAIR) AT3G13200.1 (e_value=3e-44) | Symbols: EMB2769 | Cwf15 / Cwc15 cell cycle control family protein | chr3:4242239-4243976 FORWARD LENGTH=230;; (*ITAG) Solyc10g005800.2.1 (e_value=6e-87) genomic_reference:SL2.40ch10 gene_region:632974-637721 transcript_region:SL2.40ch10:632974..637721- go_terms:GO:0005515,GO:0003723 functional_description:"CWC15 homolog (AHRD V1 ***- B9EL88_SALSA); contains Interpro domain(s) IPR006973 Cwf15/Cwc15 cell cycle control protein "; GO:0005515,GO:0003723 NbS00011481g0031.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|1|0.66|3|0|597; (*GB) gi|224061256|ref|XP_002300393.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H330|TM245_HUMAN (e_value=9e-15) Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2;; (*TAIR) AT5G55960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc10g005790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:628827-632681 transcript_region:SL2.40ch10:628827..632681+ functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH)"; NbS00011481g0030.1 protein AED:0.19 eAED:0.19 QI:5|0.88|1|1|0.77|0.7|10|303|295; (*GB) gi|1491641|emb|CAA59170.1| (e_value=6e-178) dimethylallyltransferase [Capsicum annuum];; (*SWP) sp|P49351|FPPS1_LUPAL (e_value=4e-170) Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1;; (*TAIR) AT4G17190.1 (e_value=8e-167) | Symbols: FPS2 | farnesyl diphosphate synthase 2 | chr4:9648743-9650865 REVERSE LENGTH=342;; (*ITAG) Solyc12g015860.1.1 (e_value=2e-177) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5832999-5836983 transcript_region:SL2.40ch12:5832999..5836983- go_terms:GO:0008299 functional_description:"Farnesyl pyrophosphate synthase (AHRD V1 ***- O65004_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0008299 NbS00011481g0026.1 protein AED:0.20 eAED:0.21 QI:0|0|0.5|1|0|0|2|345|722; (*GB) gi|356527151|ref|XP_003532176.1| (e_value=5e-48) PREDICTED: uncharacterized protein LOC100813702 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=1e-42) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065510.2.1 (e_value=1e-48) genomic_reference:SL2.40ch07 gene_region:64458536-64462192 transcript_region:SL2.40ch07:64458536..64462192- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA binding protein (AHRD V1 *-*- B7SDF0_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00011481g0002.1 protein AED:0.30 eAED:0.30 QI:192|0.88|0.9|1|0.77|0.6|10|300|187; (*GB) gi|356582328|ref|NP_001239046.1| (e_value=5e-121) calcineurin B-like 2 [Solanum lycopersicum];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=4e-122) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT4G26570.1 (e_value=2e-121) | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226;; (*ITAG) Solyc07g065820.2.1 (e_value=9e-124) genomic_reference:SL2.40ch07 gene_region:64652286-64656394 transcript_region:SL2.40ch07:64652286..64656394+ go_terms:GO:0004723 functional_description:"Calcineurin B (AHRD V1 ***- Q8L7F6_PEA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0004723 NbS00043868g0005.1 protein AED:0.33 eAED:0.34 QI:530|0|0.5|1|0|0.5|2|0|177; (*GB) gi|225444623|ref|XP_002275644.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100266455 [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-13) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G20810.1 (e_value=2e-51) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc07g042470.2.1 (e_value=8e-78) genomic_reference:SL2.40ch07 gene_region:52986797-52990125 transcript_region:SL2.40ch07:52986797..52990125+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbC25798132g0003.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|446; (*GB) gi|18000070|gb|AAL54886.1|AF092915_1 (e_value=2e-175) cytochrome P450-dependent fatty acid hydroxylase [Nicotiana tabacum];; (*SWP) sp|P98188|C94A2_VICSA (e_value=5e-147) Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1;; (*TAIR) AT5G63450.1 (e_value=2e-93) | Symbols: CYP94B1 | cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510;; (*ITAG) Solyc11g065770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48460905-48462479 transcript_region:SL2.40ch11:48460905..48462479+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005264g0006.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|1|1|3|0|327; (*GB) gi|157679144|dbj|BAF80451.1| (e_value=8e-158) MYB-related transcription factor [Nicotiana tabacum];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=4e-84) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT1G66230.1 (e_value=3e-94) | Symbols: MYB20, AtMYB20 | myb domain protein 20 | chr1:24677322-24678246 FORWARD LENGTH=282;; (*ITAG) Solyc11g011050.1.1 (e_value=2e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4106566-4108390 transcript_region:SL2.40ch11:4106566..4108390+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9SPG7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000337g0006.1 protein AED:0.08 eAED:0.08 QI:256|0.76|0.64|1|0.61|0.5|14|0|702; (*GB) gi|359474301|ref|XP_002272827.2| (e_value=1e-152) PREDICTED: uncharacterized protein LOC100243215 [Vitis vinifera];; (*SWP) sp|Q8NF64|ZMIZ2_HUMAN (e_value=1e-15) Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2;; (*TAIR) AT5G41580.1 (e_value=5e-74) | Symbols: | RING/U-box superfamily protein | chr5:16626563-16630659 REVERSE LENGTH=760;; (*ITAG) Solyc08g008130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2595505-2610970 transcript_region:SL2.40ch08:2595505..2610970- go_terms:GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- B0W3U7_CULQU); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0008270 NbS00022926g0013.1 protein AED:0.01 eAED:0.05 QI:0|1|0|1|1|1|2|0|351; (*GB) gi|350536181|ref|NP_001234745.1| (e_value=5e-131) mature anther-specific protein LAT61 [Solanum lycopersicum];; (*SWP) sp|Q8S307|BZR1_ARATH (e_value=2e-88) Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1;; (*TAIR) AT1G75080.2 (e_value=1e-89) | Symbols: BZR1 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:28185709-28187063 FORWARD LENGTH=336;; (*ITAG) Solyc04g079980.2.1 (e_value=9e-156) genomic_reference:SL2.40ch04 gene_region:61883229-61885254 transcript_region:SL2.40ch04:61883229..61885254+ go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00022926g0014.1 protein AED:0.12 eAED:0.12 QI:81|1|1|1|1|1|3|216|488; (*GB) gi|225458362|ref|XP_002281768.1| (e_value=0.0) PREDICTED: anthocyanidin 3-O-glucosyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=4e-142) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=1e-136) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc04g080010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61901591-61903838 transcript_region:SL2.40ch04:61901591..61903838+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00022926g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|225458358|ref|XP_002281733.1| (e_value=1e-98) PREDICTED: peroxisomal membrane protein 11A [Vitis vinifera];; (*SWP) sp|Q9FZF1|PX11A_ARATH (e_value=2e-93) Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1;; (*TAIR) AT1G47750.1 (e_value=2e-94) | Symbols: PEX11A | peroxin 11A | chr1:17569388-17570134 REVERSE LENGTH=248;; (*ITAG) Solyc04g080000.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61896501-61897271 transcript_region:SL2.40ch04:61896501..61897271+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-3 (AHRD V1 ***- PX113_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00022926g0015.1 protein AED:0.20 eAED:0.21 QI:72|0.75|0.8|1|0.25|0.4|5|385|93 NbS00032043g0010.1 protein AED:0.05 eAED:0.06 QI:119|1|0.5|1|1|1|2|0|661; (*GB) gi|224110252|ref|XP_002315461.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0.0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2;; (*TAIR) AT4G16120.1 (e_value=0.0) | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661;; (*ITAG) Solyc01g065530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64199720-64202838 transcript_region:SL2.40ch01:64199720..64202838+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00032043g0011.1 protein AED:0.02 eAED:0.02 QI:96|0.75|0.8|1|0.75|0.8|5|0|712; (*GB) gi|343407542|gb|AEM23772.1| (e_value=0.0) RRB2 type-b response regulator [Nicotiana tabacum];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=2e-160) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=1e-161) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc01g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64203477-64207656 transcript_region:SL2.40ch01:64203477..64207656- go_terms:GO:0005515,GO:0003700 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0005515,GO:0003700 NbS00047680g0008.1 protein AED:0.30 eAED:0.35 QI:0|0.76|0.73|0.92|0.76|0.73|26|1902|683; (*GB) gi|297736278|emb|CBI24916.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O08550|MLL4_MOUSE (e_value=8e-13) Histone-lysine N-methyltransferase MLL4 OS=Mus musculus GN=Wbp7 PE=1 SV=3;; (*TAIR) AT3G08020.1 (e_value=2e-142) | Symbols: | PHD finger family protein | chr3:2557753-2561534 REVERSE LENGTH=779;; (*ITAG) Solyc01g087430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74153504-74164827 transcript_region:SL2.40ch01:74153504..74164827- go_terms:GO:0008270 functional_description:"PHD zinc finger-containing protein (AHRD V1 *--- D3BN85_POLPA); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00018068g0003.1 protein AED:0.25 eAED:0.25 QI:238|1|0.8|1|0.75|1|5|585|375; (*GB) gi|3913650|sp|O04397.1|FENR2_TOBAC (e_value=0.0) RecName: Full=Ferredoxin--NADP reductase, root-type isozyme, chloroplastic; Short=FNR; Flags: Precursor;; (*SWP) sp|O04397|FENR2_TOBAC (e_value=0.0) Ferredoxin--NADP reductase, root-type isozyme, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G30510.1 (e_value=0.0) | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10807150-10808984 REVERSE LENGTH=381;; (*ITAG) Solyc02g024050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15568322-15574101 transcript_region:SL2.40ch02:15568322..15574101+ go_terms:GO:0003959 functional_description:"Ferredoxin--NADP reductase (AHRD V1 ***- B9SB31_RICCO); contains Interpro domain(s) IPR012146 Ferredoxin--NADP reductase "; GO:0003959 NbS00000215g0008.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|180; (*GB) gi|27529822|dbj|BAC53926.1| (e_value=3e-65) NtEPc-like protein [Nicotiana tabacum];; (*TAIR) AT1G79800.1 (e_value=3e-21) | Symbols: ENODL7, AtENODL7 | early nodulin-like protein 7 | chr1:30018549-30019217 FORWARD LENGTH=192;; (*ITAG) Solyc03g120860.2.1 (e_value=5e-40) genomic_reference:SL2.40ch03 gene_region:63157115-63158046 transcript_region:SL2.40ch03:63157115..63158046- go_terms:GO:0009055 functional_description:"Early nodulin-like protein 1 (AHRD V1 *--- B6TP28_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00000215g0010.1 protein AED:0.11 eAED:0.11 QI:211|1|1|1|0.85|0.8|15|450|605; (*GB) gi|225442531|ref|XP_002284134.1| (e_value=0.0) PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera];; (*SWP) sp|P21240|CPNB1_ARATH (e_value=0.0) Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3;; (*TAIR) AT1G55490.2 (e_value=0.0) | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715717-20718673 REVERSE LENGTH=600;; (*ITAG) Solyc03g120850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63150621-63156052 transcript_region:SL2.40ch03:63150621..63156052- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00000215g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|1|1|4|0|335; (*GB) gi|225442511|ref|XP_002284034.1| (e_value=2e-158) PREDICTED: nucleoporin NUP53 [Vitis vinifera];; (*SWP) sp|Q6P6X9|NUP53_DANRE (e_value=2e-16) Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1;; (*TAIR) AT3G16310.1 (e_value=3e-149) | Symbols: | mitotic phosphoprotein N' end (MPPN) family protein | chr3:5526593-5528106 REVERSE LENGTH=329;; (*ITAG) Solyc03g120880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63161053-63167269 transcript_region:SL2.40ch03:63161053..63167269- functional_description:"Nucleoporin NUP53 (AHRD V1 *--- C3KIJ6_ANOFI); contains Interpro domain(s) IPR007846 MPPN "; NbS00001865g0003.1 protein AED:0.11 eAED:0.11 QI:125|1|1|1|0.75|0.8|5|149|146; (*GB) gi|76160980|gb|ABA40453.1| (e_value=9e-61) RNA binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=7e-51) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT4G13850.4 (e_value=3e-52) | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=129;; (*ITAG) Solyc05g053780.2.1 (e_value=2e-64) genomic_reference:SL2.40ch05 gene_region:62958028-62959831 transcript_region:SL2.40ch05:62958028..62959831+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003676,GO:0000166 NbS00033876g0006.1 protein AED:0.13 eAED:0.13 QI:305|0.90|0.90|1|0.88|0.92|54|514|1969; (*GB) gi|19912731|dbj|BAB88648.1| (e_value=0.0) microtubule bundling polypeptide TMBP200 [Nicotiana tabacum];; (*SWP) sp|Q94FN2|MOR1_ARATH (e_value=0.0) Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1;; (*TAIR) AT2G35630.1 (e_value=0.0) | Symbols: MOR1, GEM1 | ARM repeat superfamily protein | chr2:14966828-14980361 FORWARD LENGTH=1978;; (*ITAG) Solyc02g078640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37856990-37880778 transcript_region:SL2.40ch02:37856990..37880778- go_terms:GO:0008017 functional_description:"Microtubule associated protein (AHRD V1 *--* A8J2Q6_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00054838g0003.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.6|1|1|1|5|0|948; (*GB) gi|6691125|gb|AAF24497.1|AF213696_1 (e_value=0.0) FH protein NFH2 [Nicotiana tabacum];; (*SWP) sp|Q9SE97|FH1_ARATH (e_value=0.0) Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1;; (*TAIR) AT3G25500.1 (e_value=0.0) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc09g042740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29840544-29844761 transcript_region:SL2.40ch09:29840544..29844761+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00054838g0008.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0.5|1|1|1|4|0|440; (*GB) gi|255583385|ref|XP_002532453.1| (e_value=0.0) acyl-CoA thioesterase, putative [Ricinus communis];; (*SWP) sp|Q9R0X4|ACOT9_MOUSE (e_value=1e-30) Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1;; (*TAIR) AT5G48370.2 (e_value=0.0) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr5:19598666-19600512 REVERSE LENGTH=437;; (*ITAG) Solyc09g042750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29845223-29851412 transcript_region:SL2.40ch09:29845223..29851412- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE)"; GO:0016291 NbS00026189g0009.1 protein AED:0.34 eAED:0.35 QI:282|0.75|1|1|0.75|0.8|5|354|138; (*GB) gi|5932420|gb|AAD56951.1|AF184886_1 (e_value=1e-96) LIM domain protein WLIM2 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=7e-40) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G55770.5 (e_value=1e-80) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:20703799-20705115 FORWARD LENGTH=199;; (*ITAG) Solyc05g052780.2.1 (e_value=2e-96) genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ go_terms:GO:0005246,GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0005246,GO:0042802 NbS00026189g0010.1 protein AED:0.31 eAED:0.33 QI:38|1|0.75|1|1|1|4|440|306; (*GB) gi|225449232|ref|XP_002279987.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Vitis vinifera];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00012046g0005.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|323; (*GB) gi|359492779|ref|XP_002278632.2| (e_value=4e-89) PREDICTED: transcriptional activator Myb-like [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=1e-36) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G17950.1 (e_value=1e-64) | Symbols: ATMYB52, BW52, MYB52 | myb domain protein 52 | chr1:6177764-6179063 FORWARD LENGTH=249;; (*ITAG) Solyc04g064540.2.1 (e_value=1e-134) genomic_reference:SL2.40ch04 gene_region:54812889-54815114 transcript_region:SL2.40ch04:54812889..54815114- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- B9I4W4_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00040410g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.9|0.81|0.90|0.9|0.90|11|219|462; (*GB) gi|119866035|gb|ABM05487.1| (e_value=0.0) Impa1 [Nicotiana benthamiana];; (*SWP) sp|O22478|IMA_SOLLC (e_value=0.0) Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2;; (*TAIR) AT3G06720.2 (e_value=0.0) | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532;; (*ITAG) Solyc06g009750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3705492-3711608 transcript_region:SL2.40ch06:3705492..3711608+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR002652 Importin-alpha-like, importin-beta-binding region IPR000225 Armadillo IPR011989 Armadillo-like helical "; GO:0008320 NbS00022656g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.83|1|0.81|0.75|12|479|428; (*GB) gi|225435291|ref|XP_002282279.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase DDB_G0279405-like [Vitis vinifera];; (*SWP) sp|Q54WW7|Y0010_DICDI (e_value=5e-63) Probable serine/threonine-protein kinase DDB_G0279405 OS=Dictyostelium discoideum GN=DDB_G0279405 PE=3 SV=1;; (*TAIR) AT5G60550.1 (e_value=2e-179) | Symbols: GRIK2, ATSNAK1 | geminivirus rep interacting kinase 2 | chr5:24340135-24342356 FORWARD LENGTH=407;; (*ITAG) Solyc11g069310.1.1 (e_value=1e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51007185-51010200 transcript_region:SL2.40ch11:51007185..51010200+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q8LPG6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023027g0005.1 protein AED:0.15 eAED:0.16 QI:60|0|0|1|1|1|7|0|997; (*GB) gi|167995454|gb|ACA13601.1| (e_value=0.0) RNA-dependent RNA polymerase [Nicotiana attenuata];; (*SWP) sp|Q9SG02|RDR6_ARATH (e_value=0.0) RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1;; (*TAIR) AT3G49500.1 (e_value=0.0) | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196;; (*ITAG) Solyc04g014870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5125889-5130330 transcript_region:SL2.40ch04:5125889..5130330+ go_terms:GO:0003676 functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbS00027533g0015.1 protein AED:0.14 eAED:0.15 QI:0|0.88|0.94|1|0.91|0.91|35|390|1451; (*GB) gi|15221848|ref|NP_175858.1| (e_value=0.0) Myosin family protein with Dil domain [Arabidopsis thaliana];; (*SWP) sp|Q9Y4I1|MYO5A_HUMAN (e_value=9e-149) Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2;; (*TAIR) AT1G54560.1 (e_value=0.0) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc11g006220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:959156-972148 transcript_region:SL2.40ch11:959156..972148- go_terms:GO:0016459 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0016459 NbS00027533g0013.1 protein AED:0.63 eAED:0.63 QI:0|0|0.2|0.4|1|1|5|0|149; (*GB) gi|225434092|ref|XP_002275949.1| (e_value=6e-41) PREDICTED: uncharacterized protein LOC100247585 [Vitis vinifera];; (*ITAG) Solyc06g074890.1.1 (e_value=2e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:42786209-42786871 transcript_region:SL2.40ch06:42786209..42786871+ go_terms:GO:0015031 functional_description:"Trigger factor (AHRD V1 *-*- B4W095_9CYAN); contains Interpro domain(s) IPR008881 Trigger factor, ribosome-binding, bacterial "; GO:0015031 NbS00027533g0017.1 protein AED:0.17 eAED:0.17 QI:0|1|0.86|1|0.92|0.8|15|0|1093; (*GB) gi|324388022|gb|ADY38784.1| (e_value=0.0) sequence-specific DNA-binding transcription factor [Coffea arabica];; (*TAIR) AT4G12750.1 (e_value=0.0) | Symbols: | Homeodomain-like transcriptional regulator | chr4:7498009-7503920 REVERSE LENGTH=1131;; (*ITAG) Solyc11g006200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:943924-954285 transcript_region:SL2.40ch11:943924..954285+ functional_description:"Homeobox transcription factor Hox7-like protein (AHRD V1 **-- Q7X5W7_ORYSJ); contains Interpro domain(s) IPR018500 DDT subgroup "; NbS00059413g0006.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|0|0|2|0|194; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-42) hypothetical protein [Nicotiana tabacum]; NbS00059413g0005.1 protein AED:0.41 eAED:0.54 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-34) hypothetical protein [Nicotiana tabacum]; NbS00020855g0001.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|187; (*GB) gi|729623|sp|Q03685.1|BIP5_TOBAC (e_value=3e-84) RecName: Full=Luminal-binding protein 5; Short=BiP 5; AltName: Full=78 kDa glucose-regulated protein homolog 5; Short=GRP-78-5; Flags: Precursor;; (*SWP) sp|Q03685|BIP5_TOBAC (e_value=9e-86) Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1;; (*TAIR) AT5G42020.1 (e_value=3e-81) | Symbols: BIP, BIP2 | Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=668;; (*ITAG) Solyc03g082920.2.1 (e_value=5e-84) genomic_reference:SL2.40ch03 gene_region:46341372-46345339 transcript_region:SL2.40ch03:46341372..46345339- go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00020855g0009.1 protein AED:0.56 eAED:0.66 QI:0|0|0|0.66|0|0.33|3|0|150; (*GB) gi|729618|sp|Q03682.1|BIP2_TOBAC (e_value=3e-45) RecName: Full=Luminal-binding protein 2; Short=BiP 2; AltName: Full=78 kDa glucose-regulated protein homolog 2; Short=GRP-78-2;; (*SWP) sp|Q03682|BIP2_TOBAC (e_value=9e-47) Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1;; (*TAIR) AT5G42020.2 (e_value=5e-44) | Symbols: BIP | Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=613;; (*ITAG) Solyc08g082820.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:62655311-62659585 transcript_region:SL2.40ch08:62655311..62659585+ go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00020855g0002.1 protein AED:0.57 eAED:0.72 QI:0|0|0|0.8|1|1|5|0|255; (*GB) gi|302142877|emb|CBI20172.3| (e_value=7e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=8e-41) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1;; (*TAIR) AT1G78720.1 (e_value=1e-59) | Symbols: | SecY protein transport family protein | chr1:29605629-29607510 FORWARD LENGTH=475;; (*ITAG) Solyc10g007390.2.1 (e_value=2e-66) genomic_reference:SL2.40ch10 gene_region:1761545-1765548 transcript_region:SL2.40ch10:1761545..1765548- go_terms:GO:0043022,GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0043022,GO:0015450 NbS00005133g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|236; (*GB) gi|255570960|ref|XP_002526431.1| (e_value=5e-136) protein with unknown function [Ricinus communis];; (*SWP) sp|O04486|RAA2A_ARATH (e_value=1e-131) Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1;; (*TAIR) AT1G09630.1 (e_value=9e-133) | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c | RAB GTPase 11C | chr1:3118350-3119571 REVERSE LENGTH=217;; (*ITAG) Solyc01g103380.2.1 (e_value=7e-151) genomic_reference:SL2.40ch01 gene_region:83755957-83758949 transcript_region:SL2.40ch01:83755957..83758949- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00000769g0009.1 protein AED:0.26 eAED:0.26 QI:343|0.77|0.7|1|0.11|0.1|10|0|188; (*GB) gi|13384052|gb|AAK21250.1|AF335237_1 (e_value=2e-95) MADS-box transcription factor FBP13 [Petunia x hybrida];; (*SWP) sp|Q9FVC1|SVP_ARATH (e_value=8e-57) MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1;; (*TAIR) AT2G22540.1 (e_value=6e-58) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc11g010570.1.1 (e_value=4e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3640857-3645766 transcript_region:SL2.40ch11:3640857..3645766+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00000769g0008.1 protein AED:0.24 eAED:0.30 QI:0|0.5|0.42|0.89|0.5|0.57|19|0|876; (*GB) gi|255545964|ref|XP_002514042.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8L7W1|MSL3_ARATH (e_value=0.0) Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1;; (*TAIR) AT1G58200.2 (e_value=0.0) | Symbols: MSL3 | MSCS-like 3 | chr1:21548370-21552488 REVERSE LENGTH=678;; (*ITAG) Solyc04g076300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58808337-58816333 transcript_region:SL2.40ch04:58808337..58816333- go_terms:GO:0005216 functional_description:"Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS "; GO:0005216 NbS00000769g0108.1 protein AED:0.12 eAED:0.12 QI:220|0.96|0.93|0.96|0.71|0.68|29|0|1167 NbS00000769g0118.1 protein AED:0.22 eAED:0.22 QI:126|0.71|0.62|1|0.42|0.37|8|328|521 NbS00045990g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|1|1|4|0|360; (*GB) gi|356503803|ref|XP_003520692.1| (e_value=0.0) PREDICTED: probable purple acid phosphatase 20-like [Glycine max];; (*SWP) sp|Q9LXI7|PPA20_ARATH (e_value=0.0) Probable purple acid phosphatase 20 OS=Arabidopsis thaliana GN=PAP20 PE=2 SV=1;; (*TAIR) AT3G52780.1 (e_value=0.0) | Symbols: ATPAP20, PAP20 | Purple acid phosphatases superfamily protein | chr3:19561525-19564195 REVERSE LENGTH=427;; (*ITAG) Solyc09g009610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3023290-3027216 transcript_region:SL2.40ch09:3023290..3027216+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00001787g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|126; (*ITAG) Solyc05g013640.1.1 (e_value=6e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6944499-6944840 transcript_region:SL2.40ch05:6944499..6944840+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001787g0003.1 protein AED:0.35 eAED:0.35 QI:14|-1|0|1|-1|0|1|0|151; (*GB) gi|10241933|dbj|BAB13710.1| (e_value=3e-48) elicitor resposible protein [Nicotiana tabacum];; (*ITAG) Solyc05g013630.1.1 (e_value=4e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6934325-6934771 transcript_region:SL2.40ch05:6934325..6934771+ functional_description:"Unknown protein (Fragment) (AHRD V1 ***- Q43520_SOLLC)"; NbS00019523g0003.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|0|0|3|0|175; (*ITAG) Solyc09g091680.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66281798-66282940 transcript_region:SL2.40ch09:66281798..66282940+ functional_description:"F-box family protein (AHRD V1 **-- D7L456_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00049100g0001.1 protein AED:0.08 eAED:0.08 QI:715|1|1|1|0.33|0.25|4|696|219; (*GB) gi|356573402|ref|XP_003554850.1| (e_value=9e-17) PREDICTED: uncharacterized protein LOC100797620 [Glycine max];; (*ITAG) Solyc02g069400.2.1 (e_value=1e-94) genomic_reference:SL2.40ch02 gene_region:33881965-33884949 transcript_region:SL2.40ch02:33881965..33884949+ go_terms:GO:0005515,GO:0004871 functional_description:"Enhanced disease susceptibility 1 (Fragment) (AHRD V1 *--- B2BDU4_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0004871 NbS00000228g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|279; (*GB) gi|6919958|sp|O80361.1|RK4_TOBAC (e_value=4e-151) RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor;; (*SWP) sp|O80361|RK4_TOBAC (e_value=1e-152) 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1;; (*TAIR) AT1G07320.4 (e_value=2e-96) | Symbols: RPL4 | ribosomal protein L4 | chr1:2249190-2250173 FORWARD LENGTH=278;; (*ITAG) Solyc07g061900.2.1 (e_value=8e-131) genomic_reference:SL2.40ch07 gene_region:62014111-62015965 transcript_region:SL2.40ch07:62014111..62015965+ go_terms:GO:0008266,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- B6TG27_MAIZE); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0008266,GO:0005515 NbS00015129g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|0|0|2|386|419; (*GB) gi|317457143|gb|ADV29653.1| (e_value=0.0) receptor-like protein kinase 2.33 [Solanum habrochaites];; (*SWP) sp|P43298|TMK1_ARATH (e_value=5e-48) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT3G23750.1 (e_value=6e-55) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:8558332-8561263 FORWARD LENGTH=928;; (*ITAG) Solyc01g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1677070-1680707 transcript_region:SL2.40ch01:1677070..1680707+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015129g0001.1 protein AED:0.41 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|317457287|gb|ADV29725.1| (e_value=2e-80) receptor-like protein kinase 2.33 [Solanum arcanum];; (*SWP) sp|P43298|TMK1_ARATH (e_value=3e-23) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=2e-24) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc01g007130.2.1 (e_value=6e-87) genomic_reference:SL2.40ch01 gene_region:1677070-1680707 transcript_region:SL2.40ch01:1677070..1680707+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014017g0005.1 protein AED:0.01 eAED:0.01 QI:185|0|0.5|1|0|0.5|2|172|162; (*GB) gi|7542598|gb|AAF63515.1|AF242731_1 (e_value=3e-71) TMV-induced protein I [Capsicum annuum];; (*TAIR) AT4G39730.1 (e_value=4e-52) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096550.2.1 (e_value=1e-78) genomic_reference:SL2.40ch03 gene_region:52149761-52150922 transcript_region:SL2.40ch03:52149761..52150922+ functional_description:"Wound/stress protein (AHRD V1 **-- Q672Q3_SOLLC); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00014017g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|112 NbS00014017g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|88; (*ITAG) Solyc04g054340.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:51490617-51490868 transcript_region:SL2.40ch04:51490617..51490868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014017g0016.1 protein AED:0.16 eAED:0.16 QI:171|0.5|0.33|1|0.5|0.66|3|0|145; (*GB) gi|10241929|dbj|BAB13708.1| (e_value=3e-81) elicitor inducible protein [Nicotiana tabacum];; (*TAIR) AT4G39730.1 (e_value=2e-38) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096540.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:52147104-52148707 transcript_region:SL2.40ch03:52147104..52148707- functional_description:"Wound/stress protein (AHRD V1 **-- Q672Q3_SOLLC); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00014017g0017.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|177; (*ITAG) Solyc03g071760.1.1 (e_value=8e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00037235g0011.1 protein AED:0.33 eAED:0.33 QI:0|0.84|0.78|0.85|0.76|0.78|14|0|298; (*GB) gi|192910838|gb|ACF06527.1| (e_value=2e-135) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|A2YMP7|SCAM1_ORYSI (e_value=1e-121) Putative secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. indica GN=SCAMP1 PE=3 SV=1;; (*TAIR) AT1G61250.1 (e_value=2e-120) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc02g078840.2.1 (e_value=5e-172) genomic_reference:SL2.40ch02 gene_region:38066920-38073383 transcript_region:SL2.40ch02:38066920..38073383+ go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00037235g0010.1 protein AED:0.16 eAED:0.17 QI:0|1|0.66|1|1|1|3|252|459; (*GB) gi|224116190|ref|XP_002317235.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q38945|DPNPH_ARATH (e_value=4e-165) PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1;; (*TAIR) AT5G54390.1 (e_value=3e-166) | Symbols: AHL, ATAHL, HL | HAL2-like | chr5:22086133-22087586 FORWARD LENGTH=373;; (*ITAG) Solyc02g078860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38076526-38079868 transcript_region:SL2.40ch02:38076526..38079868- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0008441 NbS00037235g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|297803984|ref|XP_002869876.1| (e_value=3e-12) hypothetical protein ARALYDRAFT_914508 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G21620.2 (e_value=4e-15) | Symbols: | glycine-rich protein | chr4:11491519-11491914 FORWARD LENGTH=98;; (*ITAG) Solyc10g009190.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3186982-3187359 transcript_region:SL2.40ch10:3186982..3187359- functional_description:"Cold shock protein-1 (AHRD V1 *-*- B6SP63_MAIZE)"; NbS00039134g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|0|693; (*GB) gi|225464331|ref|XP_002271933.1| (e_value=0.0) PREDICTED: probable xyloglucan glycosyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9SB75|CSLC5_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1;; (*TAIR) AT4G31590.1 (e_value=0.0) | Symbols: ATCSLC05, CSLC05, ATCSLC5, CSLC5 | Cellulose-synthase-like C5 | chr4:15309889-15312336 REVERSE LENGTH=692;; (*ITAG) Solyc08g006310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:974337-978244 transcript_region:SL2.40ch08:974337..978244+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **-* D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00000336g0009.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.75|0.33|0.5|4|0|386; (*GB) gi|225441744|ref|XP_002277537.1| (e_value=6e-127) PREDICTED: protein TRANSPARENT TESTA 1 [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=9e-78) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT3G57670.1 (e_value=6e-113) | Symbols: NTT, WIP2 | C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383;; (*ITAG) Solyc11g062060.1.1 (e_value=9e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45968163-45970774 transcript_region:SL2.40ch11:45968163..45970774- go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- D7KHP2_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00000336g0010.1 protein AED:0.20 eAED:0.20 QI:223|0.88|0.9|1|0.77|0.8|10|550|294; (*GB) gi|255565297|ref|XP_002523640.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q54D08|LST8_DICDI (e_value=9e-124) Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1;; (*TAIR) AT3G18140.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:6212743-6214567 REVERSE LENGTH=305;; (*ITAG) Solyc03g059310.2.1 (e_value=2e-154) genomic_reference:SL2.40ch03 gene_region:26021002-26031019 transcript_region:SL2.40ch03:26021002..26031019+ go_terms:GO:0005515 functional_description:"WD-40 repeat family protein (AHRD V1 **-- Q5D6Y8_GOSHI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00023764g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0.5|0.33|3|1501|785; (*GB) gi|224092224|ref|XP_002309517.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9UQ35|SRRM2_HUMAN (e_value=2e-16) Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2;; (*TAIR) AT3G49601.1 (e_value=1e-36) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387504-18389279 REVERSE LENGTH=591;; (*ITAG) Solyc08g074440.2.1 (e_value=2e-70) genomic_reference:SL2.40ch08 gene_region:55720785-55723546 transcript_region:SL2.40ch08:55720785..55723546+ functional_description:"Pre-mRNA-splicing factor CWC21 (AHRD V1 *--- B2W2U4_PYRTR); contains Interpro domain(s) IPR013170 mRNA splicing factor, Cwf21 "; NbS00061036g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0|2|0|148; (*ITAG) Solyc07g065190.2.1 (e_value=1e-37) genomic_reference:SL2.40ch07 gene_region:64279858-64284513 transcript_region:SL2.40ch07:64279858..64284513- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00040527g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|55|169; (*GB) gi|358008882|gb|AET99100.1| (e_value=9e-86) dehydration-responsive element-binding protein DREB3 [Solanum tuberosum];; (*SWP) sp|O22174|ERF08_ARATH (e_value=7e-50) Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1;; (*TAIR) AT2G23340.1 (e_value=5e-51) | Symbols: DEAR3 | DREB and EAR motif protein 3 | chr2:9938186-9938716 FORWARD LENGTH=176;; (*ITAG) Solyc02g093130.1.1 (e_value=6e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48631396-48631797 transcript_region:SL2.40ch02:48631396..48631797+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00040527g0004.1 protein AED:0.33 eAED:0.51 QI:0|0|0|1|0|0|3|0|140; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-25) hypothetical protein [Nicotiana tabacum]; NbS00003561g0007.1 protein AED:0.06 eAED:0.08 QI:0|0|0.5|1|1|1|2|0|633; (*GB) gi|224057202|ref|XP_002299170.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1RMH9|DNJC2_BOVIN (e_value=2e-45) DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1;; (*TAIR) AT3G11450.1 (e_value=0.0) | Symbols: | DnaJ domain ;Myb-like DNA-binding domain | chr3:3605459-3607402 REVERSE LENGTH=647;; (*ITAG) Solyc01g096700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79480993-79483332 transcript_region:SL2.40ch01:79480993..79483332- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 1 (AHRD V1 *-*- DNAJ1_THET8); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0051082 NbS00003561g0023.1 protein AED:0.10 eAED:0.10 QI:0|0.77|0.5|1|0.77|0.8|10|0|637; (*GB) gi|255569213|ref|XP_002525575.1| (e_value=1e-90) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=2e-43) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT5G56790.1 (e_value=7e-53) | Symbols: | Protein kinase superfamily protein | chr5:22968610-22971391 FORWARD LENGTH=669;; (*ITAG) Solyc01g096690.1.1 (e_value=3e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79475882-79480057 transcript_region:SL2.40ch01:79475882..79480057- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 *-** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00003561g0018.1 protein AED:0.14 eAED:0.14 QI:0|1|0.8|1|1|1|10|0|542; (*GB) gi|224075886|ref|XP_002304813.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVJ3|MA655_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 5 OS=Arabidopsis thaliana GN=MAP65-5 PE=1 SV=2;; (*TAIR) AT2G38720.1 (e_value=2e-177) | Symbols: MAP65-5 | microtubule-associated protein 65-5 | chr2:16188047-16192102 FORWARD LENGTH=587;; (*ITAG) Solyc01g096680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79465420-79473571 transcript_region:SL2.40ch01:79465420..79473571- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00003561g0022.1 protein AED:0.36 eAED:0.38 QI:0|0.42|0.12|1|0.57|0.75|8|0|367; (*GB) gi|224075888|ref|XP_002304814.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12480.1 (e_value=7e-27) | Symbols: NF-YC11 | nuclear factor Y, subunit C11 | chr3:3958065-3960278 FORWARD LENGTH=293;; (*ITAG) Solyc01g096710.2.1 (e_value=6e-117) genomic_reference:SL2.40ch01 gene_region:79486423-79494328 transcript_region:SL2.40ch01:79486423..79494328- go_terms:GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 *--- B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00003561g0020.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|236; (*GB) gi|350536853|ref|NP_001234524.1| (e_value=5e-90) uncharacterized protein LOC543930 [Solanum lycopersicum];; (*TAIR) AT5G07020.1 (e_value=2e-57) | Symbols: | proline-rich family protein | chr5:2180669-2182284 REVERSE LENGTH=235;; (*ITAG) Solyc01g096660.2.1 (e_value=1e-92) genomic_reference:SL2.40ch01 gene_region:79458544-79461335 transcript_region:SL2.40ch01:79458544..79461335+ functional_description:"Genomic DNA chromosome 5 P1 clone MOJ9 (AHRD V1 ***- Q9FL44_ARATH)"; NbS00003561g0019.1 protein AED:0.11 eAED:0.11 QI:131|1|0.66|1|1|1|3|0|511; (*GB) gi|193290672|gb|ACF17644.1| (e_value=0.0) putative p-coumarate 3-hydroxylase [Capsicum annuum];; (*SWP) sp|O48922|C98A2_SOYBN (e_value=0.0) Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1;; (*TAIR) AT2G40890.1 (e_value=0.0) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc01g096670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79462238-79465262 transcript_region:SL2.40ch01:79462238..79465262+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003561g0021.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|1|1|4|544|147; (*GB) gi|350536553|ref|NP_001234764.1| (e_value=1e-55) ACI112 protein [Solanum lycopersicum];; (*TAIR) AT3G12320.1 (e_value=3e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:3924034-3925262 FORWARD LENGTH=269;; (*ITAG) Solyc01g096630.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:79450786-79453160 transcript_region:SL2.40ch01:79450786..79453160+ functional_description:"ACI112 (AHRD V1 ***- Q3SC80_SOLLC)"; NbS00003561g0027.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|146; (*GB) gi|357513497|ref|XP_003627037.1| (e_value=3e-33) Flavonol sulfotransferase-like protein [Medicago truncatula];; (*SWP) sp|Q8L5A7|SOT15_ARATH (e_value=5e-23) Cytosolic sulfotransferase 15 OS=Arabidopsis thaliana GN=SOT15 PE=1 SV=1;; (*TAIR) AT5G07010.1 (e_value=4e-24) | Symbols: ATST2A, ST2A | sulfotransferase 2A | chr5:2174960-2176039 REVERSE LENGTH=359;; (*ITAG) Solyc05g011840.2.1 (e_value=1e-33) genomic_reference:SL2.40ch05 gene_region:5074706-5075851 transcript_region:SL2.40ch05:5074706..5075851- go_terms:GO:0080131,GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7LQL2_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080131,GO:0080118 NbS00008025g0011.1 protein AED:0.12 eAED:0.12 QI:211|1|1|1|1|1|2|502|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=1e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P62201|CALM_LILLO (e_value=2e-105) Calmodulin OS=Lilium longiflorum PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=2e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=1e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00008025g0013.1 protein AED:0.00 eAED:0.00 QI:87|1|1|1|1|1|2|25|369; (*GB) gi|225443916|ref|XP_002278480.1| (e_value=1e-60) PREDICTED: F-box protein At5g46170 isoform 1 [Vitis vinifera];; (*SWP) sp|O49508|FB237_ARATH (e_value=5e-62) F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1;; (*TAIR) AT4G18380.2 (e_value=4e-63) | Symbols: | F-box family protein | chr4:10157957-10159099 FORWARD LENGTH=380;; (*ITAG) Solyc08g048430.2.1 (e_value=1e-47) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008025g0001.1 protein AED:0.27 eAED:0.35 QI:0|0|0|0.83|1|1|6|0|543; (*GB) gi|82621124|gb|ABB86250.1| (e_value=9e-128) RNA-binding protein AKIP1-like [Solanum tuberosum];; (*TAIR) AT3G56860.5 (e_value=3e-98) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc01g008970.2.1 (e_value=4e-128) genomic_reference:SL2.40ch01 gene_region:2988194-2990000 transcript_region:SL2.40ch01:2988194..2990000- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00008025g0008.1 protein AED:0.45 eAED:0.47 QI:0|0|0|1|1|1|2|0|60 NbS00008025g0017.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|165; (*GB) gi|20336341|gb|AAM18178.1| (e_value=2e-34) anther protein [Nicotiana tabacum]; NbS00013825g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|0.5|2|0|960; (*GB) gi|359489869|ref|XP_002270776.2| (e_value=6e-170) PREDICTED: uncharacterized protein LOC100249386 [Vitis vinifera];; (*SWP) sp|Q9LFE4|Y5673_ARATH (e_value=5e-98) WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1;; (*TAIR) AT5G16730.1 (e_value=4e-99) | Symbols: | Plant protein of unknown function (DUF827) | chr5:5497890-5500775 FORWARD LENGTH=853;; (*ITAG) Solyc03g097190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52952215-52956621 transcript_region:SL2.40ch03:52952215..52956621- functional_description:"Cingulin-like (AHRD V1 *--- Q6Z7G3_ORYSJ)"; NbS00010455g0003.1 protein AED:0.34 eAED:0.34 QI:71|1|1|1|1|1|5|280|187; (*GB) gi|359487742|ref|XP_002280795.2| (e_value=3e-62) PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera];; (*TAIR) AT3G05345.1 (e_value=9e-55) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:1522449-1523847 REVERSE LENGTH=244;; (*ITAG) Solyc01g099260.2.1 (e_value=5e-84) genomic_reference:SL2.40ch01 gene_region:81302547-81306319 transcript_region:SL2.40ch01:81302547..81306319+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A7J483_9EURY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00010455g0013.1 protein AED:0.07 eAED:0.07 QI:78|1|0.66|1|0|0|3|0|446; (*GB) gi|224123202|ref|XP_002319019.1| (e_value=1e-124) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05330.1 (e_value=3e-106) | Symbols: ATN, ATTAN | cyclin family | chr3:1519162-1521159 REVERSE LENGTH=444;; (*ITAG) Solyc01g099270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81306624-81308855 transcript_region:SL2.40ch01:81306624..81308855- functional_description:"Microtubule binding protein (AHRD V1 ***- A6YTD5_CUCME)"; NbS00010455g0014.1 protein AED:0.18 eAED:0.18 QI:660|1|0.76|1|0.91|1|13|0|504; (*GB) gi|359487759|ref|XP_003633645.1| (e_value=0.0) PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=0.0) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=0.0) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc01g099280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81312318-81324913 transcript_region:SL2.40ch01:81312318..81324913- go_terms:GO:0019901,GO:0004679 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0019901,GO:0004679 NbS00023749g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|1786140|dbj|BAA19113.1| (e_value=7e-108) tapetum-specific zinc finger protein 1 [Petunia x hybrida];; (*SWP) sp|O65499|ZAT3_ARATH (e_value=8e-15) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT5G56200.1 (e_value=7e-22) | Symbols: | C2H2 type zinc finger transcription factor family | chr5:22747768-22749249 FORWARD LENGTH=493;; (*ITAG) Solyc07g066160.1.1 (e_value=2e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64873053-64874048 transcript_region:SL2.40ch07:64873053..64874048- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MD22_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00033199g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.4|0.33|1|0.2|0.33|6|0|376; (*GB) gi|118485763|gb|ABK94731.1| (e_value=5e-44) unknown [Populus trichocarpa];; (*ITAG) Solyc04g079940.2.1 (e_value=5e-77) genomic_reference:SL2.40ch04 gene_region:61853024-61857677 transcript_region:SL2.40ch04:61853024..61857677- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MVE5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00013120g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|67 NbS00006252g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.8|0.5|0.83|1|1|6|0|313; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=9e-139) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=8e-102) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=6e-103) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00033016g0004.1 protein AED:0.23 eAED:0.27 QI:0|0.66|0.57|0.85|0.5|0.71|7|252|327; (*GB) gi|7705214|gb|AAB33480.2| (e_value=3e-151) alcohol dehydrogenase ADH [Solanum lycopersicum];; (*SWP) sp|Q9FH04|ADHL7_ARATH (e_value=3e-131) Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1;; (*TAIR) AT5G42250.1 (e_value=2e-132) | Symbols: | Zinc-binding alcohol dehydrogenase family protein | chr5:16894087-16897450 FORWARD LENGTH=390;; (*ITAG) Solyc12g094500.1.1 (e_value=3e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63068119-63071688 transcript_region:SL2.40ch12:63068119..63071688+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase 1 (AHRD V1 ***- B6TD57_MAIZE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00036018g0004.1 protein AED:0.20 eAED:0.23 QI:0|0.69|0.71|0.85|0.53|0.64|14|250|463; (*GB) gi|356502780|ref|XP_003520194.1| (e_value=0.0) PREDICTED: guanylate-binding protein 4-like [Glycine max];; (*SWP) sp|P32456|GBP2_HUMAN (e_value=1e-21) Interferon-induced guanylate-binding protein 2 OS=Homo sapiens GN=GBP2 PE=2 SV=3;; (*TAIR) AT2G38840.1 (e_value=0.0) | Symbols: | Guanylate-binding family protein | chr2:16227329-16232115 FORWARD LENGTH=602;; (*ITAG) Solyc06g084080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45618068-45622948 transcript_region:SL2.40ch06:45618068..45622948- go_terms:GO:0005525 functional_description:"Guanylate-binding family protein (AHRD V1 ***- D7LCC4_ARALY); contains Interpro domain(s) IPR015900 Guanylate-binding protein-like, C-terminal "; GO:0005525 NbC24492183g0001.1 protein AED:0.00 eAED:0.00 QI:47|-1|0|1|-1|1|1|0|140; (*GB) gi|359479705|ref|XP_003632339.1| (e_value=5e-39) PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SA60|PPR6_ARATH (e_value=1e-32) Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1;; (*TAIR) AT1G03100.1 (e_value=1e-33) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:744026-746407 REVERSE LENGTH=793;; (*ITAG) Solyc04g008410.1.1 (e_value=2e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038294g0001.1 protein AED:0.58 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-13) RNase H family protein [Solanum demissum]; NbS00004417g0006.1 protein AED:0.29 eAED:0.29 QI:25|1|1|1|1|1|5|435|263; (*GB) gi|15778154|dbj|BAB68527.1| (e_value=6e-159) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93214|14339_SOLLC (e_value=2e-155) 14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2;; (*TAIR) AT1G26480.1 (e_value=2e-140) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc07g053260.2.1 (e_value=2e-156) genomic_reference:SL2.40ch07 gene_region:59058945-59063496 transcript_region:SL2.40ch07:59058945..59063496+ go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00040459g0009.1 protein AED:0.35 eAED:0.36 QI:142|0|0.5|1|0.33|0.75|4|398|203 NbS00040459g0011.1 protein AED:0.01 eAED:0.01 QI:16|1|0.33|1|1|1|3|0|150; (*GB) gi|359473511|ref|XP_002272014.2| (e_value=3e-37) PREDICTED: transcription elongation regulator 1-like [Vitis vinifera];; (*TAIR) AT3G19840.1 (e_value=2e-31) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=1e-59) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00040459g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|440|172; (*GB) gi|255549485|ref|XP_002515795.1| (e_value=2e-50) Pre-mRNA-processing protein PRP40, putative [Ricinus communis];; (*TAIR) AT3G19840.1 (e_value=1e-47) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=2e-68) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00007959g0001.1 protein AED:0.40 eAED:0.48 QI:0|0|0|1|1|1|2|0|186; (*GB) gi|224085180|ref|XP_002307513.1| (e_value=4e-29) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g071980.2.1 (e_value=4e-55) genomic_reference:SL2.40ch04 gene_region:56591441-56596377 transcript_region:SL2.40ch04:56591441..56596377- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00002829g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.71|0.5|1|0.85|0.75|8|0|696; (*GB) gi|225442172|ref|XP_002275795.1| (e_value=0.0) PREDICTED: phospholipid:diacylglycerol acyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=0.0) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=0.0) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc03g121960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64008721-64015716 transcript_region:SL2.40ch03:64008721..64015716- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** C5ME98_CANTT); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00043065g0002.1 protein AED:0.45 eAED:0.45 QI:87|0.5|0.66|0.66|0.5|0.33|3|0|142; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00000188g0006.1 protein AED:0.33 eAED:0.39 QI:0|0.5|0|1|1|1|3|0|173; (*GB) gi|224146297|ref|XP_002325955.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=3e-21) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.2 (e_value=2e-22) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951480 REVERSE LENGTH=384;; (*ITAG) Solyc11g032060.1.1 (e_value=6e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:21090654-21092869 transcript_region:SL2.40ch11:21090654..21092869+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00000188g0007.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|0|0|2|0|93; (*GB) gi|356515422|ref|XP_003526399.1| (e_value=7e-33) PREDICTED: cellulose synthase-like protein G1-like [Glycine max];; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=4e-32) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.1 (e_value=6e-34) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951173 REVERSE LENGTH=283;; (*ITAG) Solyc11g032060.1.1 (e_value=1e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:21090654-21092869 transcript_region:SL2.40ch11:21090654..21092869+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00036599g0011.1 protein AED:0.17 eAED:0.18 QI:79|0|0.5|1|0|0.5|2|0|138; (*GB) gi|147852876|emb|CAN79082.1| (e_value=1e-60) hypothetical protein VITISV_004821 [Vitis vinifera];; (*ITAG) Solyc10g008330.2.1 (e_value=2e-71) genomic_reference:SL2.40ch10 gene_region:2466093-2467665 transcript_region:SL2.40ch10:2466093..2467665- go_terms:GO:0009607 functional_description:"Pollen allergen-like protein (Fragment) (AHRD V1 **-- A9XNU2_9MYRT); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00036599g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|356549914|ref|XP_003543335.1| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100781758 [Glycine max];; (*TAIR) AT4G28310.1 (e_value=6e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14017458-14018066 FORWARD LENGTH=202;; (*ITAG) Solyc10g008320.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2464074-2464700 transcript_region:SL2.40ch10:2464074..2464700- functional_description:"Unknown Protein (AHRD V1)"; NbS00036599g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|540; (*GB) gi|255553755|ref|XP_002517918.1| (e_value=3e-150) structural constituent of cell wall, putative [Ricinus communis];; (*TAIR) AT4G28300.1 (e_value=7e-94) | Symbols: | Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496;; (*ITAG) Solyc10g008340.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2468971-2473546 transcript_region:SL2.40ch10:2468971..2473546- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00048882g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|1|1|2|0|164; (*GB) gi|356495992|ref|XP_003516854.1| (e_value=3e-70) PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Glycine max];; (*SWP) sp|Q9S713|STT7_ARATH (e_value=1e-65) Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1;; (*TAIR) AT1G68830.1 (e_value=1e-66) | Symbols: STN7 | STT7 homolog STN7 | chr1:25872654-25875473 REVERSE LENGTH=562;; (*ITAG) Solyc12g021280.1.1 (e_value=4e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15120633-15133486 transcript_region:SL2.40ch12:15120633..15133486- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000562g0016.1 protein AED:0.20 eAED:0.22 QI:206|0.5|0.33|1|0.5|0.33|3|876|50 NbS00000562g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=3e-40) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106140.1.1 (e_value=5e-104) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85856165-85857865 transcript_region:SL2.40ch01:85856165..85857865+ functional_description:"F-box protein family-like (AHRD V1 *-*- Q6ZCS3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00000562g0015.1 protein AED:0.46 eAED:0.47 QI:0|1|0.5|1|1|1|2|0|51; (*GB) gi|225470986|ref|XP_002265503.1| (e_value=2e-19) PREDICTED: MADS-box transcription factor 27 [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=1e-14) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT4G37940.1 (e_value=1e-15) | Symbols: AGL21 | AGAMOUS-like 21 | chr4:17835695-17838621 REVERSE LENGTH=228;; (*ITAG) Solyc02g091550.1.1 (e_value=4e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00000562g0005.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|61 NbS00000562g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|707; (*GB) gi|224096774|ref|XP_002334671.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc01g106160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85861185-85863347 transcript_region:SL2.40ch01:85861185..85863347- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00000562g0004.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|225429224|ref|XP_002263530.1| (e_value=1e-49) PREDICTED: oligopeptide transporter 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FME8|OPT4_ARATH (e_value=1e-47) Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1;; (*TAIR) AT5G64410.1 (e_value=1e-48) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc01g106200.1.1 (e_value=2e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85910651-85912004 transcript_region:SL2.40ch01:85910651..85912004- go_terms:GO:0055085 functional_description:"Oligopeptide transporter 4 (AHRD V1 ***- B6U8Q5_MAIZE); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0055085 NbS00000562g0020.1 protein AED:0.47 eAED:0.54 QI:91|0|0.28|1|0.16|0.42|7|54|45 NbS00039348g0004.1 protein AED:0.08 eAED:0.09 QI:0|0.66|0.5|1|0.66|0.75|4|0|355; (*GB) gi|225470571|ref|XP_002272174.1| (e_value=3e-125) PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-50) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G38030.1 (e_value=3e-111) | Symbols: | MATE efflux family protein | chr5:15171486-15175302 REVERSE LENGTH=498;; (*ITAG) Solyc05g013460.2.1 (e_value=3e-153) genomic_reference:SL2.40ch05 gene_region:6653147-6662740 transcript_region:SL2.40ch05:6653147..6662740+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00032227g0015.1 protein AED:0.06 eAED:0.07 QI:0|1|0.5|1|1|0.75|4|0|357; (*GB) gi|224126397|ref|XP_002319828.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-167) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc10g006340.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:972310-974968 transcript_region:SL2.40ch10:972310..974968+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00032227g0018.1 protein AED:0.16 eAED:0.18 QI:163|0.66|0.42|1|0.66|0.71|7|0|373; (*GB) gi|224126441|ref|XP_002319839.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJU7|PPA18_ARATH (e_value=0.0) Purple acid phosphatase 18 OS=Arabidopsis thaliana GN=PAP18 PE=2 SV=1;; (*TAIR) AT3G20500.1 (e_value=0.0) | Symbols: ATPAP18, PAP18 | purple acid phosphatase 18 | chr3:7157926-7160244 FORWARD LENGTH=437;; (*ITAG) Solyc10g006300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:950380-955091 transcript_region:SL2.40ch10:950380..955091+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00032227g0014.1 protein AED:0.41 eAED:0.41 QI:1|1|1|1|0.5|0.33|3|321|59 NbS00032227g0022.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.75|1|0.42|0.37|8|403|821; (*GB) gi|28200788|emb|CAD45375.1| (e_value=0.0) potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=0.0) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT4G27060.1 (e_value=0.0) | Symbols: TOR1, SPR2, CN | ARM repeat superfamily protein | chr4:13581581-13585070 REVERSE LENGTH=864;; (*ITAG) Solyc10g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:974968-983342 transcript_region:SL2.40ch10:974968..983342- go_terms:GO:0008017 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--* B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00032227g0016.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|1|1|6|375|217; (*GB) gi|255563947|ref|XP_002522973.1| (e_value=1e-138) Vacuolar sorting protein SNF8, putative [Ricinus communis];; (*SWP) sp|Q5M759|VP221_ARATH (e_value=2e-135) Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2;; (*TAIR) AT4G27040.4 (e_value=2e-136) | Symbols: VPS22 | EAP30/Vps36 family protein | chr4:13573061-13574576 REVERSE LENGTH=250;; (*ITAG) Solyc10g006320.2.1 (e_value=8e-160) genomic_reference:SL2.40ch10 gene_region:960203-963954 transcript_region:SL2.40ch10:960203..963954- go_terms:GO:0003702,GO:0008134 functional_description:"Vacuolar sorting protein SNF8 (AHRD V1 ***- D0MSV1_PHYIN); contains Interpro domain(s) IPR016689 ESCRT-2 complex, Snf8 "; GO:0003702,GO:0008134 NbS00002770g0013.1 protein AED:0.03 eAED:0.03 QI:156|1|1|1|0.33|0.5|4|48|415; (*GB) gi|255541354|ref|XP_002511741.1| (e_value=1e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45480.1 (e_value=2e-33) | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 | chr2:18745583-18747403 FORWARD LENGTH=429;; (*ITAG) Solyc01g091540.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:76917403-76920198 transcript_region:SL2.40ch01:76917403..76920198+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 12 (AHRD V1 *--- Q6AWX7_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00002770g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|422; (*GB) gi|312837047|dbj|BAJ34929.1| (e_value=2e-163) fasciclin-like arabinogalactan protein [Vitis hybrid cultivar];; (*SWP) sp|O22126|FLA8_ARATH (e_value=4e-152) Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1;; (*TAIR) AT2G45470.1 (e_value=3e-153) | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalactan protein 8 | chr2:18742797-18744059 REVERSE LENGTH=420;; (*ITAG) Solyc01g091530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76909578-76911211 transcript_region:SL2.40ch01:76909578..76911211- go_terms:GO:0005516 functional_description:"Fasciclin-like arabinogalactan protein 13 (AHRD V1 ***- A9XTL8_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005516 NbS00002770g0014.1 protein AED:0.06 eAED:0.06 QI:76|1|1|1|1|1|2|90|108; (*ITAG) Solyc01g091490.2.1 (e_value=6e-29) genomic_reference:SL2.40ch01 gene_region:76880854-76882051 transcript_region:SL2.40ch01:76880854..76882051- functional_description:"Unknown Protein (AHRD V1)"; NbS00002770g0016.1 protein AED:0.08 eAED:0.08 QI:225|0.85|0.75|1|0.85|0.87|8|619|692; (*GB) gi|296089085|emb|CBI38788.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66H85|ANKZ1_RAT (e_value=2e-35) Ankyrin repeat and zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Ankzf1 PE=2 SV=1;; (*TAIR) AT1G01930.1 (e_value=1e-142) | Symbols: | zinc finger protein-related | chr1:320041-322809 REVERSE LENGTH=580;; (*ITAG) Solyc01g091510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00002770g0015.1 protein AED:0.15 eAED:0.15 QI:174|1|1|1|1|1|13|499|939; (*GB) gi|359489534|ref|XP_002273779.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260735 [Vitis vinifera];; (*TAIR) AT2G45460.2 (e_value=0.0) | Symbols: | SMAD/FHA domain-containing protein | chr2:18737054-18741690 REVERSE LENGTH=902;; (*ITAG) Solyc01g091500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76885279-76893140 transcript_region:SL2.40ch01:76885279..76893140- functional_description:"Forkhead-associated domain-containing protein (AHRD V1 ***- D7LCJ5_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00023501g0008.1 protein AED:0.26 eAED:0.28 QI:48|1|1|1|0.71|0.6|15|733|468; (*GB) gi|255584625|ref|XP_002533036.1| (e_value=0.0) Magnesium and cobalt efflux protein corC, putative [Ricinus communis];; (*SWP) sp|Q9LK65|Y3307_ARATH (e_value=0.0) Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH1 PE=4 SV=1;; (*TAIR) AT3G13070.1 (e_value=0.0) | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr3:4191511-4195112 REVERSE LENGTH=661;; (*ITAG) Solyc07g065310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64344445-64352893 transcript_region:SL2.40ch07:64344445..64352893- functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- Q7P7S7_FUSNV); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00023972g0003.1 protein AED:0.21 eAED:0.35 QI:80|1|0|1|0|0.5|2|0|120; (*ITAG) Solyc03g044690.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14328670-14329779 transcript_region:SL2.40ch03:14328670..14329779+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00029066g0002.1 protein AED:0.72 eAED:0.88 QI:0|0|0|1|0|0.5|2|0|103; (*GB) gi|255548656|ref|XP_002515384.1| (e_value=8e-29) Protein ABC1, mitochondrial precursor, putative [Ricinus communis];; (*TAIR) AT5G24970.2 (e_value=1e-28) | Symbols: | Protein kinase superfamily protein | chr5:8604358-8608656 REVERSE LENGTH=761;; (*ITAG) Solyc08g068920.2.1 (e_value=3e-38) genomic_reference:SL2.40ch08 gene_region:55197139-55214508 transcript_region:SL2.40ch08:55197139..55214508- functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00029845g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.76|0.90|0.85|0.90|21|50|831; (*GB) gi|169977312|emb|CAQ18903.1| (e_value=0.0) chromomethylase [Nicotiana sylvestris];; (*SWP) sp|Q9AXT8|CMT1_MAIZE (e_value=0.0) DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1;; (*TAIR) AT1G69770.1 (e_value=0.0) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839;; (*ITAG) Solyc01g006100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:756827-764851 transcript_region:SL2.40ch01:756827..764851- go_terms:GO:0008017,GO:0045545 functional_description:"Cytosine-specific methyltransferase (AHRD V1 *-*- B4XTS9_ELAGV); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0008017,GO:0045545 NbS00029845g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|356576777|ref|XP_003556506.1| (e_value=7e-93) PREDICTED: probable rRNA-processing protein EBP2 homolog [Glycine max];; (*SWP) sp|Q9LUJ5|EBP2_ARATH (e_value=3e-90) Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1;; (*TAIR) AT3G22660.1 (e_value=3e-91) | Symbols: | rRNA processing protein-related | chr3:8016237-8017118 REVERSE LENGTH=293;; (*ITAG) Solyc01g006170.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:809135-810275 transcript_region:SL2.40ch01:809135..810275- go_terms:GO:0005515 functional_description:"rRNA processing protein ebna1-binding protein-related (AHRD V1 *--* C4QG91_SCHMA); contains Interpro domain(s) IPR008610 Eukaryotic rRNA processing "; GO:0005515 NbS00037969g0008.1 protein AED:0.10 eAED:0.10 QI:166|1|1|1|0.42|0.75|8|349|197; (*GB) gi|359476348|ref|XP_002281191.2| (e_value=2e-75) PREDICTED: probable peptidyl-tRNA hydrolase 2-like [Vitis vinifera];; (*SWP) sp|Q9Y3E5|PTH2_HUMAN (e_value=3e-34) Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1;; (*TAIR) AT4G32900.2 (e_value=1e-71) | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr4:15878944-15880979 REVERSE LENGTH=193;; (*ITAG) Solyc08g066540.2.1 (e_value=6e-102) genomic_reference:SL2.40ch08 gene_region:52490703-52497569 transcript_region:SL2.40ch08:52490703..52497569- go_terms:GO:0006412 functional_description:"Peptidyl-tRNA hydrolase 2 (AHRD V1 *-*- Q504C6_DANRE); contains Interpro domain(s) IPR002833 Peptidyl-tRNA hydrolase, PTH2 "; GO:0006412 NbS00037969g0007.1 protein AED:0.05 eAED:0.05 QI:143|1|1|1|0|0|2|156|242; (*GB) gi|225429924|ref|XP_002281202.1| (e_value=3e-100) PREDICTED: uncharacterized protein LOC100266212 [Vitis vinifera];; (*SWP) sp|Q62925|M3K1_RAT (e_value=8e-11) Mitogen-activated protein kinase kinase kinase 1 OS=Rattus norvegicus GN=Map3k1 PE=1 SV=1;; (*TAIR) AT5G11620.1 (e_value=2e-56) | Symbols: | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related | chr5:3739076-3740127 REVERSE LENGTH=273;; (*ITAG) Solyc08g066550.2.1 (e_value=3e-134) genomic_reference:SL2.40ch08 gene_region:52502571-52504047 transcript_region:SL2.40ch08:52502571..52504047+ go_terms:GO:0005515 functional_description:"Mitogen-activated protein kinase kinase kinase 1 (Predicted) (AHRD V1 ***- B2KI43_RHIFE); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0005515 NbS00021702g0002.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|2|150; (*GB) gi|359494864|ref|XP_003634857.1| (e_value=3e-64) PREDICTED: uncharacterized protein LOC100854976 [Vitis vinifera];; (*TAIR) AT1G11120.2 (e_value=1e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3715229-3717320 FORWARD LENGTH=161;; (*ITAG) Solyc03g006590.2.1 (e_value=1e-84) genomic_reference:SL2.40ch03 gene_region:1175427-1178105 transcript_region:SL2.40ch03:1175427..1178105+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039457g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|227955639|gb|ACP43542.1| (e_value=2e-31) lipid transfer protein [Chimonanthus praecox];; (*SWP) sp|Q39950|NLTP_HELAN (e_value=6e-27) Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=2e-25) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc06g005770.1.1 (e_value=4e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:808170-808529 transcript_region:SL2.40ch06:808170..808529+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A5JUZ8_SESIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00012127g0001.1 protein AED:0.17 eAED:0.29 QI:0|0|0.5|1|0|0|2|0|153; (*GB) gi|225458101|ref|XP_002280716.1| (e_value=5e-32) PREDICTED: probable salt tolerance-like protein At1g75540 [Vitis vinifera];; (*SWP) sp|Q9LQZ7|STHX_ARATH (e_value=1e-28) Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1;; (*TAIR) AT1G75540.1 (e_value=1e-29) | Symbols: STH2 | salt tolerance homolog2 | chr1:28366059-28367398 FORWARD LENGTH=331;; (*ITAG) Solyc01g110180.2.1 (e_value=9e-54) genomic_reference:SL2.40ch01 gene_region:88706256-88707726 transcript_region:SL2.40ch01:88706256..88707726+ go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00062233g0006.1 protein AED:0.31 eAED:0.31 QI:34|0.5|0.33|1|1|1|3|408|79; (*GB) gi|147857564|emb|CAN82884.1| (e_value=3e-29) hypothetical protein VITISV_023155 [Vitis vinifera];; (*SWP) sp|Q8S1Z1|UTP11_ORYSJ (e_value=6e-26) Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2;; (*TAIR) AT3G60360.1 (e_value=1e-25) | Symbols: EDA14, UTP11 | embryo sac development arrest 14 | chr3:22312477-22314002 REVERSE LENGTH=228;; (*ITAG) Solyc10g079430.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60285916-60289754 transcript_region:SL2.40ch10:60285916..60289754+ go_terms:GO:0030515,GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 11 (AHRD V1 ***- B6TNQ8_MAIZE); contains Interpro domain(s) IPR007144 Small-subunit processome, Utp11 "; GO:0030515,GO:0005515 NbS00020925g0011.1 protein AED:0.01 eAED:0.01 QI:191|1|1|1|1|1|2|225|259; (*GB) gi|310892554|gb|ADP37419.1| (e_value=3e-108) ethylene-responsive-element-binding factor 4 [Petunia x hybrida];; (*SWP) sp|O22259|ERF71_ARATH (e_value=2e-44) Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1;; (*TAIR) AT2G47520.1 (e_value=2e-45) | Symbols: HRE2 | Integrase-type DNA-binding superfamily protein | chr2:19502891-19503490 REVERSE LENGTH=171;; (*ITAG) Solyc09g075420.2.1 (e_value=1e-95) genomic_reference:SL2.40ch09 gene_region:62625026-62626247 transcript_region:SL2.40ch09:62625026..62626247+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain "; GO:0003677 NbS00020925g0004.1 protein AED:0.30 eAED:0.32 QI:4|0.33|0.5|1|1|1|4|0|213; (*GB) gi|83284003|gb|ABC01909.1| (e_value=1e-114) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=1e-106) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=9e-108) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=8e-120) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00023139g0003.1 protein AED:0.19 eAED:0.21 QI:0|0.78|0.86|1|0.92|0.86|15|371|975; (*GB) gi|359492500|ref|XP_003634421.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CTR1-like [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-176) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G24480.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:12650410-12654755 FORWARD LENGTH=956;; (*ITAG) Solyc04g076480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58934431-58942365 transcript_region:SL2.40ch04:58934431..58942365- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_COTJA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00035518g0006.1 protein AED:0.00 eAED:0.00 QI:77|1|1|1|1|1|2|165|120 NbS00035518g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|219|392; (*GB) gi|224121128|ref|XP_002318504.1| (e_value=8e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LG53|UN932_ARATH (e_value=1e-128) UNC93-like protein 2 OS=Arabidopsis thaliana GN=At1g18010 PE=2 SV=2;; (*TAIR) AT1G18010.1 (e_value=9e-130) | Symbols: | Major facilitator superfamily protein | chr1:6199980-6201359 FORWARD LENGTH=459;; (*ITAG) Solyc03g080020.2.1 (e_value=8e-58) genomic_reference:SL2.40ch03 gene_region:45462357-45464256 transcript_region:SL2.40ch03:45462357..45464256+ functional_description:"DUF895 domain membrane protein (AHRD V1 *-*- D4ALB1_ARTBC)"; NbS00059125g0001.1 protein AED:0.32 eAED:0.89 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-46) hypothetical protein [Nicotiana tabacum]; NbS00013959g0022.1 protein AED:0.10 eAED:0.10 QI:91|0.90|0.83|1|1|1|12|500|1046; (*GB) gi|359484896|ref|XP_002276890.2| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming]-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q69P51|CESA9_ORYSJ (e_value=0.0) Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1;; (*TAIR) AT5G17420.1 (e_value=0.0) | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026;; (*ITAG) Solyc07g005840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:667374-673097 transcript_region:SL2.40ch07:667374..673097+ go_terms:GO:0016759 functional_description:"Cellulose synthase 3 (AHRD V1 **** Q2IB41_EUCGR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00013959g0018.1 protein AED:0.19 eAED:0.19 QI:0|1|0.91|1|0.72|0.66|12|925|267; (*GB) gi|225445818|ref|XP_002276984.1| (e_value=2e-87) PREDICTED: translation initiation factor IF-3 [Vitis vinifera];; (*SWP) sp|Q8YNE3|IF3_NOSS1 (e_value=2e-30) Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1;; (*TAIR) AT4G30690.1 (e_value=4e-80) | Symbols: | Translation initiation factor 3 protein | chr4:14960742-14962328 FORWARD LENGTH=281;; (*ITAG) Solyc07g005830.2.1 (e_value=1e-118) genomic_reference:SL2.40ch07 gene_region:660995-666057 transcript_region:SL2.40ch07:660995..666057+ go_terms:GO:0006413 functional_description:"Translation initiation factor IF-3 (AHRD V1 ***- B9T4Q8_RICCO); contains Interpro domain(s) IPR001288 Translation initiation factor 3 "; GO:0006413 NbS00013959g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|6|0|380; (*GB) gi|186898205|gb|ACC93947.1| (e_value=8e-143) heat-shock protein 70 [Hevea brasiliensis];; (*SWP) sp|P26413|HSP70_SOYBN (e_value=3e-142) Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1;; (*TAIR) AT1G16030.1 (e_value=2e-138) | Symbols: Hsp70b | heat shock protein 70B | chr1:5502386-5504326 REVERSE LENGTH=646;; (*ITAG) Solyc07g005820.2.1 (e_value=9e-158) genomic_reference:SL2.40ch07 gene_region:655717-659235 transcript_region:SL2.40ch07:655717..659235- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00013959g0007.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|357479991|ref|XP_003610281.1| (e_value=1e-163) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=5e-134) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=4e-135) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc07g005850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:674049-676424 transcript_region:SL2.40ch07:674049..676424- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00013959g0023.1 protein AED:0.27 eAED:0.29 QI:0|0.5|0.33|1|1|1|9|0|766; (*GB) gi|356562557|ref|XP_003549536.1| (e_value=0.0) PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Glycine max];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=0.0) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.2 (e_value=0.0) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=776;; (*ITAG) Solyc07g005810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:648580-654196 transcript_region:SL2.40ch07:648580..654196- go_terms:GO:0003723 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0003723 NbS00013959g0006.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|225445812|ref|XP_002275298.1| (e_value=3e-180) PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Vitis vinifera];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=4e-164) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=3e-165) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc07g005850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:674049-676424 transcript_region:SL2.40ch07:674049..676424- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00009638g0021.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.7|1|0.44|0.5|10|234|365; (*GB) gi|225452047|ref|XP_002280386.1| (e_value=2e-151) PREDICTED: uncharacterized protein LOC100241286 [Vitis vinifera];; (*TAIR) AT5G38380.1 (e_value=5e-150) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:15345660-15348217 FORWARD LENGTH=361;; (*ITAG) Solyc02g086070.2.1 (e_value=6e-94) genomic_reference:SL2.40ch02 gene_region:43428688-43431403 transcript_region:SL2.40ch02:43428688..43431403- functional_description:"Genomic DNA chromosome 5 P1 clone MXI10 (AHRD V1 ***- Q9FF25_ARATH)"; NbS00009638g0013.1 protein AED:0.27 eAED:0.40 QI:0|0|0|1|1|1|2|0|154; (*GB) gi|357508105|ref|XP_003624341.1| (e_value=6e-20) hypothetical protein MTR_7g082180 [Medicago truncatula];; (*TAIR) AT1G67050.1 (e_value=3e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264;; (*ITAG) Solyc02g063230.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29870430-29871206 transcript_region:SL2.40ch02:29870430..29871206+ functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00009638g0015.1 protein AED:0.47 eAED:0.60 QI:18|1|0.5|1|0|0.5|2|23|40 NbS00009638g0019.1 protein AED:0.11 eAED:0.11 QI:333|1|1|1|1|1|3|176|181; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=6e-118) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=2e-119) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=7e-96) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=8e-118) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00009638g0017.1 protein AED:0.27 eAED:0.28 QI:420|0.8|0.5|1|0.4|0.33|6|0|261; (*GB) gi|224077174|ref|XP_002305164.1| (e_value=1e-86) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67080.1 (e_value=2e-73) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc02g086050.2.1 (e_value=2e-122) genomic_reference:SL2.40ch02 gene_region:43422137-43425124 transcript_region:SL2.40ch02:43422137..43425124+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00009638g0024.1 protein AED:0.22 eAED:0.35 QI:0|0.28|0.12|0.87|0.28|0.25|8|0|257; (*GB) gi|224127468|ref|XP_002329285.1| (e_value=4e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|O35678|MGLL_MOUSE (e_value=4e-15) Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1;; (*TAIR) AT5G16120.1 (e_value=1e-76) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5266048-5267775 FORWARD LENGTH=351;; (*ITAG) Solyc02g063160.2.1 (e_value=7e-93) genomic_reference:SL2.40ch02 gene_region:29811816-29817553 transcript_region:SL2.40ch02:29811816..29817553+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9LF16_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00010306g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|225; (*GB) gi|224059506|ref|XP_002299880.1| (e_value=4e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT5G59350.1 (e_value=1e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23941132-23941995 FORWARD LENGTH=287;; (*ITAG) Solyc11g066080.1.1 (e_value=7e-94) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48838045-48838875 transcript_region:SL2.40ch11:48838045..48838875- functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 ***- Q9LTJ3_ARATH)"; NbS00010066g0030.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.76|1|0.83|0.84|13|251|627; (*GB) gi|255549605|ref|XP_002515854.1| (e_value=0.0) molybdopterin biosynthesis protein, putative [Ricinus communis];; (*SWP) sp|Q39054|CNX1_ARATH (e_value=0.0) Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=2;; (*TAIR) AT5G20990.1 (e_value=0.0) | Symbols: B73, SIR4, CNX, CHL6, CNX1 | molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) | chr5:7128737-7133397 REVERSE LENGTH=670;; (*ITAG) Solyc01g009050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3045561-3064835 transcript_region:SL2.40ch01:3045561..3064835- go_terms:GO:0032324,GO:0006777 functional_description:"Molybdenum cofactor biosynthesis protein (AHRD V1 ***- Q309F9_MAIZE); contains Interpro domain(s) IPR005110 MoeA, N-terminal, domain I and II "; GO:0032324,GO:0006777 NbS00010066g0031.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|0.5|2|0|88; (*GB) gi|6671194|gb|AAF23127.1|AF198389_1 (e_value=4e-51) cystatin [Solanum lycopersicum];; (*SWP) sp|Q06445|CYTI_VIGUN (e_value=4e-36) Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1;; (*TAIR) AT3G12490.1 (e_value=2e-30) | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3:3960523-3961777 REVERSE LENGTH=201;; (*ITAG) Solyc01g009020.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:3021936-3024369 transcript_region:SL2.40ch01:3021936..3024369- go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q2VY67_9ERIC); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00010066g0032.1 protein AED:0.13 eAED:0.13 QI:272|1|0.88|1|1|1|9|180|461; (*GB) gi|7271222|emb|CAB81558.1| (e_value=0.0) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P25011|CCNB1_SOYBN (e_value=3e-138) G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G06150.1 (e_value=5e-136) | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein | chr5:1859542-1861570 REVERSE LENGTH=445;; (*ITAG) Solyc01g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3041736-3044740 transcript_region:SL2.40ch01:3041736..3044740+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbS00010066g0035.1 protein AED:0.19 eAED:0.19 QI:171|1|1|1|0.92|1|14|288|598; (*GB) gi|359479309|ref|XP_003632255.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242629 [Vitis vinifera];; (*SWP) sp|Q55GJ3|NCA2_DICDI (e_value=1e-14) Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum GN=nca2 PE=3 SV=1;; (*TAIR) AT5G12290.1 (e_value=0.0) | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974374-3978066 REVERSE LENGTH=602;; (*ITAG) Solyc01g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3025820-3038891 transcript_region:SL2.40ch01:3025820..3038891+ functional_description:"Nuclear control of ATPase protein (AHRD V1 *--- C9SK53_VERA1); contains Interpro domain(s) IPR013946 Nuclear control of ATP synthase 2 "; NbS00010066g0007.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|242; (*GB) gi|113205135|gb|AAT40503.2| (e_value=2e-135) RIKEN cDNA 1500006O09, related [Solanum demissum];; (*SWP) sp|Q6I9Y2|THOC7_HUMAN (e_value=1e-16) THO complex subunit 7 homolog OS=Homo sapiens GN=THOC7 PE=1 SV=3;; (*TAIR) AT5G16790.1 (e_value=1e-107) | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft1p | chr5:5522642-5523475 REVERSE LENGTH=233;; (*ITAG) Solyc01g008990.2.1 (e_value=7e-152) genomic_reference:SL2.40ch01 gene_region:3003153-3007525 transcript_region:SL2.40ch01:3003153..3007525+ go_terms:GO:0005515 functional_description:"THO complex subunit 7 homolog (AHRD V1 ***- B5XFL3_SALSA); contains Interpro domain(s) IPR018018 Tho complex subunit 7 "; GO:0005515 NbS00010066g0036.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.5|1|0.8|0.83|6|0|235; (*GB) gi|141452638|gb|ABO87658.1| (e_value=6e-130) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Nicotiana benthamiana];; (*SWP) sp|P93841|ISPE_SOLLC (e_value=4e-119) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1;; (*TAIR) AT2G26930.1 (e_value=2e-95) | Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491829-11494229 REVERSE LENGTH=383;; (*ITAG) Solyc01g009010.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:3014153-3020442 transcript_region:SL2.40ch01:3014153..3020442+ go_terms:GO:0016114,GO:0016310 functional_description:"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (AHRD V1 ***- A4USB3_NICBE); contains Interpro domain(s) IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase "; GO:0016114,GO:0016310 NbS00010066g0037.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.6|1|0.5|0.6|5|0|194; (*GB) gi|141452638|gb|ABO87658.1| (e_value=2e-110) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Nicotiana benthamiana];; (*SWP) sp|P93841|ISPE_SOLLC (e_value=4e-83) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1;; (*TAIR) AT2G26930.1 (e_value=2e-60) | Symbols: ATCDPMEK, PDE277, ISPE, CDPMEK | 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase | chr2:11491829-11494229 REVERSE LENGTH=383;; (*ITAG) Solyc01g009010.2.1 (e_value=3e-86) genomic_reference:SL2.40ch01 gene_region:3014153-3020442 transcript_region:SL2.40ch01:3014153..3020442+ go_terms:GO:0016114,GO:0016310 functional_description:"4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (AHRD V1 ***- A4USB3_NICBE); contains Interpro domain(s) IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase "; GO:0016114,GO:0016310 NbS00010066g0005.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225435913|ref|XP_002266870.1| (e_value=8e-60) PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=2e-29) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT2G40830.3 (e_value=2e-47) | Symbols: RHC1A | RING-H2 finger C1A | chr2:17043642-17044628 FORWARD LENGTH=328;; (*ITAG) Solyc01g009000.2.1 (e_value=4e-87) genomic_reference:SL2.40ch01 gene_region:3012133-3013463 transcript_region:SL2.40ch01:3012133..3013463+ go_terms:GO:0005515 functional_description:"RING finger protein 6 (AHRD V1 *--- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00010066g0008.1 protein AED:0.43 eAED:0.43 QI:0|1|1|1|0.66|0.5|4|272|130; (*GB) gi|375298532|dbj|BAL61093.1| (e_value=4e-36) putative basic leucine-zipper transcription factor, partial [Diospyros kaki];; (*SWP) sp|Q9C5Q2|AI5L3_ARATH (e_value=7e-20) ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1;; (*TAIR) AT2G41070.2 (e_value=5e-21) | Symbols: EEL, ATBZIP12, DPBF4 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17131249-17132208 FORWARD LENGTH=262;; (*ITAG) Solyc01g008980.2.1 (e_value=4e-65) genomic_reference:SL2.40ch01 gene_region:2995054-2999268 transcript_region:SL2.40ch01:2995054..2999268+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 **-- Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00010066g0033.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|7271222|emb|CAB81558.1| (e_value=1e-28) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P25011|CCNB1_SOYBN (e_value=5e-15) G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G06150.1 (e_value=1e-13) | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein | chr5:1859542-1861570 REVERSE LENGTH=445;; (*ITAG) Solyc06g073610.2.1 (e_value=5e-22) genomic_reference:SL2.40ch06 gene_region:41807779-41810668 transcript_region:SL2.40ch06:41807779..41810668+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbS00010066g0027.1 protein AED:0.35 eAED:0.53 QI:0|0|0|1|1|1|2|0|206; (*GB) gi|242035753|ref|XP_002465271.1| (e_value=4e-38) hypothetical protein SORBIDRAFT_01g035310 [Sorghum bicolor];; (*TAIR) AT2G40830.3 (e_value=3e-28) | Symbols: RHC1A | RING-H2 finger C1A | chr2:17043642-17044628 FORWARD LENGTH=328;; (*ITAG) Solyc01g009000.2.1 (e_value=6e-96) genomic_reference:SL2.40ch01 gene_region:3012133-3013463 transcript_region:SL2.40ch01:3012133..3013463+ go_terms:GO:0005515 functional_description:"RING finger protein 6 (AHRD V1 *--- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00010066g0034.1 protein AED:0.42 eAED:0.61 QI:29|0.5|0|1|0|0.33|3|0|82 NbS00006609g0006.1 protein AED:0.07 eAED:0.07 QI:1582|1|1|1|1|1|2|272|196; (*GB) gi|255564031|ref|XP_002523014.1| (e_value=1e-77) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55915.1 (e_value=7e-43) | Symbols: | zinc ion binding | chr1:20907663-20909429 FORWARD LENGTH=404;; (*ITAG) Solyc12g015660.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5655855-5659081 transcript_region:SL2.40ch12:5655855..5659081- go_terms:GO:0005622 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7KN38_ARALY); contains Interpro domain(s) IPR013536 WLM "; GO:0005622 NbS00006609g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|187761611|dbj|BAG31944.1| (e_value=0.0) MAP kinase kinase [Nicotiana benthamiana];; (*SWP) sp|Q8RXG3|M2K5_ARATH (e_value=5e-165) Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2;; (*TAIR) AT3G21220.1 (e_value=4e-166) | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445917-7446963 FORWARD LENGTH=348;; (*ITAG) Solyc03g123800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64579230-64580309 transcript_region:SL2.40ch03:64579230..64580309- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase kinase (AHRD V1 ***- Q7XAC9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012034g0002.1 protein AED:0.26 eAED:0.27 QI:204|0|0.66|1|0|0.33|3|1393|179; (*GB) gi|255567570|ref|XP_002524764.1| (e_value=1e-28) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc09g065380.1.1 (e_value=1e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59091873-59092523 transcript_region:SL2.40ch09:59091873..59092523+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012607g0013.1 protein AED:0.08 eAED:0.13 QI:0|0|0|1|0|0.25|4|0|196; (*GB) gi|77999238|gb|ABB16966.1| (e_value=3e-42) adenylate kinase family-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=3e-14) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT3G01820.1 (e_value=2e-29) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293981-295357 REVERSE LENGTH=263;; (*ITAG) Solyc03g005050.2.1 (e_value=9e-46) genomic_reference:SL2.40ch03 gene_region:44287-46883 transcript_region:SL2.40ch03:44287..46883+ go_terms:GO:0006139 functional_description:"Adenylate kinase family-like protein (AHRD V1 ***- Q38JG0_SOLTU); contains Interpro domain(s) IPR000850 Adenylate kinase "; GO:0006139 NbS00012607g0014.1 protein AED:0.15 eAED:0.15 QI:1|0.85|0.76|1|0.6|0.57|21|489|1013; (*GB) gi|225433864|ref|XP_002264735.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264644 [Vitis vinifera];; (*TAIR) AT2G41830.1 (e_value=0.0) | Symbols: | Uncharacterized protein | chr2:17450431-17456453 REVERSE LENGTH=1025;; (*ITAG) Solyc11g044480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35792430-35811862 transcript_region:SL2.40ch11:35792430..35811862- go_terms:GO:0005488 functional_description:"Protein EFR3 homolog (AHRD V1 *-*- EFR3_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00012607g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|0|0|2|66|346; (*GB) gi|225445286|ref|XP_002281208.1| (e_value=8e-80) PREDICTED: uncharacterized protein LOC100245606 isoform 1 [Vitis vinifera];; (*TAIR) AT3G24490.1 (e_value=6e-76) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr3:8911022-8912023 FORWARD LENGTH=333;; (*ITAG) Solyc05g018350.2.1 (e_value=5e-137) genomic_reference:SL2.40ch05 gene_region:20593550-20598301 transcript_region:SL2.40ch05:20593550..20598301- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D7L9U5_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00014643g0010.1 protein AED:0.28 eAED:0.34 QI:0|0.5|0.4|1|0.25|0.4|5|0|257; (*GB) gi|225429807|ref|XP_002282879.1| (e_value=7e-95) PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Vitis vinifera];; (*SWP) sp|Q941D3|PAP8_ARATH (e_value=7e-81) Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1;; (*TAIR) AT5G19940.1 (e_value=5e-82) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739693-6740661 FORWARD LENGTH=239;; (*ITAG) Solyc08g006160.2.1 (e_value=4e-126) genomic_reference:SL2.40ch08 gene_region:880634-883706 transcript_region:SL2.40ch08:880634..883706- go_terms:GO:0009507 functional_description:"Plastid fibrillin 3 (Fragment) (AHRD V1 **-- A6XBK9_COFCA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00014643g0006.1 protein AED:0.28 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|80 NbS00047023g0002.1 protein AED:0.30 eAED:0.31 QI:498|1|0.75|1|0.66|1|4|0|237; (*GB) gi|296087194|emb|CBI33568.3| (e_value=4e-25) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g091270.2.1 (e_value=2e-60) genomic_reference:SL2.40ch02 gene_region:47195986-47199820 transcript_region:SL2.40ch02:47195986..47199820+ functional_description:"ELL-associated factor 1 (AHRD V1 *-*- B0WGU2_CULQU); contains Interpro domain(s) IPR019194 ELL-associated factor "; NbS00047023g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|225453090|ref|XP_002271387.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera];; (*TAIR) AT2G01300.1 (e_value=1e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc02g091250.1.1 (e_value=1e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47188821-47189213 transcript_region:SL2.40ch02:47188821..47189213- functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00047023g0003.1 protein AED:0.42 eAED:0.42 QI:0|0.75|0.4|1|1|1|5|0|216; (*GB) gi|356569022|ref|XP_003552706.1| (e_value=7e-112) PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max];; (*SWP) sp|Q9SXJ6|CLPP3_ARATH (e_value=2e-107) ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1;; (*TAIR) AT1G66670.1 (e_value=1e-108) | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309;; (*ITAG) Solyc02g091280.2.1 (e_value=7e-113) genomic_reference:SL2.40ch02 gene_region:47199858-47204562 transcript_region:SL2.40ch02:47199858..47204562- go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** B9H362_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00014978g0019.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|7|332|332; (*GB) gi|225436884|ref|XP_002271258.1| (e_value=1e-155) PREDICTED: exosome complex component rrp4-like [Vitis vinifera];; (*SWP) sp|Q09704|RRP4_SCHPO (e_value=1e-58) Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=2 SV=1;; (*TAIR) AT1G03360.1 (e_value=8e-141) | Symbols: ATRRP4, RRP4 | ribosomal RNA processing 4 | chr1:824653-826179 FORWARD LENGTH=322;; (*ITAG) Solyc09g074090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61266190-61271097 transcript_region:SL2.40ch09:61266190..61271097+ go_terms:GO:0000175 functional_description:"Exosome complex exonuclease RRP4 (AHRD V1 ***- D0NCN9_PHYIN)"; GO:0000175 NbS00014978g0016.1 protein AED:0.26 eAED:0.26 QI:242|1|0.85|1|1|1|7|0|544; (*GB) gi|255567650|ref|XP_002524804.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02940.1 (e_value=1e-175) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569;; (*ITAG) Solyc09g074050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61246545-61253456 transcript_region:SL2.40ch09:61246545..61253456+ functional_description:"Oxidoreductase (AHRD V1 ***- D7M3B5_ARALY)"; NbS00014978g0012.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-44) hypothetical protein [Nicotiana tabacum]; NbS00014978g0017.1 protein AED:0.33 eAED:0.49 QI:0|0|0.5|1|0|0|2|104|73 NbS00014978g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0|1|1|1|4|0|331; (*GB) gi|225436890|ref|XP_002271296.1| (e_value=8e-171) PREDICTED: probable galacturonosyltransferase-like 4 [Vitis vinifera];; (*SWP) sp|Q9M8J2|GATL4_ARATH (e_value=2e-162) Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1;; (*TAIR) AT3G06260.1 (e_value=1e-163) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351;; (*ITAG) Solyc09g074080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61260136-61261200 transcript_region:SL2.40ch09:61260136..61261200- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00014978g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|525; (*GB) gi|225436892|ref|XP_002273759.1| (e_value=4e-77) PREDICTED: uncharacterized protein LOC100252855 [Vitis vinifera];; (*SWP) sp|Q5ZIK6|BSDC1_CHICK (e_value=4e-19) BSD domain-containing protein 1 OS=Gallus gallus GN=BSDC1 PE=2 SV=1;; (*TAIR) AT1G03350.1 (e_value=3e-63) | Symbols: | BSD domain-containing protein | chr1:822834-824246 REVERSE LENGTH=470;; (*ITAG) Solyc09g074060.2.1 (e_value=5e-147) genomic_reference:SL2.40ch09 gene_region:61255344-61256749 transcript_region:SL2.40ch09:61255344..61256749- functional_description:"BSD domain containing 1 (AHRD V1 *-*- A9JT15_DANRE); contains Interpro domain(s) IPR005607 BSD "; NbS00057788g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0.33|1|0|0|3|0|418; (*GB) gi|225427983|ref|XP_002277675.1| (e_value=0.0) PREDICTED: probable endo-1,4-beta-xylanase C-like [Vitis vinifera];; (*SWP) sp|P26514|XYNA_STRLI (e_value=1e-20) Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2;; (*TAIR) AT4G38650.1 (e_value=9e-171) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:18063377-18065769 FORWARD LENGTH=562;; (*ITAG) Solyc10g055370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:52118578-52121231 transcript_region:SL2.40ch10:52118578..52121231- go_terms:GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00013645g0005.1 protein AED:0.22 eAED:0.22 QI:288|0.94|0.9|1|0.84|0.85|20|0|818; (*GB) gi|225435331|ref|XP_002285194.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Vitis vinifera];; (*SWP) sp|Q5H9R7|PP6R3_HUMAN (e_value=7e-72) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2;; (*TAIR) AT1G07990.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr1:2477413-2482898 FORWARD LENGTH=802;; (*ITAG) Solyc00g006490.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:4297199-4316361 transcript_region:SL2.40ch00:4297199..4316361+ functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 **-- SAPS3_HUMAN); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00009780g0005.1 protein AED:0.26 eAED:0.26 QI:74|1|1|1|0.66|0.75|4|224|94; (*GB) gi|18401007|ref|NP_566535.1| (e_value=1e-56) 60S ribosomal protein L37-3 [Arabidopsis thaliana];; (*SWP) sp|Q8LEM8|RL373_ARATH (e_value=4e-58) 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1;; (*TAIR) AT3G16080.1 (e_value=3e-59) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:5454892-5455677 FORWARD LENGTH=95;; (*ITAG) Solyc06g066660.2.1 (e_value=5e-62) genomic_reference:SL2.40ch06 gene_region:38274359-38276478 transcript_region:SL2.40ch06:38274359..38276478- go_terms:GO:0003735 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RQN1_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0003735 NbS00003090g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|406; (*GB) gi|296081858|emb|CBI20863.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P87053|POF1_SCHPO (e_value=6e-17) F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof1 PE=1 SV=1;; (*TAIR) AT3G50390.1 (e_value=2e-84) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18702137-18703546 FORWARD LENGTH=469;; (*ITAG) Solyc03g044830.2.1 (e_value=6e-86) genomic_reference:SL2.40ch03 gene_region:14605841-14607642 transcript_region:SL2.40ch03:14605841..14607642+ go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 (AHRD V1 *--* GBB2_RAT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00003203g0007.1 protein AED:0.28 eAED:0.37 QI:45|0.33|0.5|1|0.33|0.5|4|160|128; (*GB) gi|225429842|ref|XP_002283165.1| (e_value=8e-40) PREDICTED: uncharacterized protein LOC100249288 isoform 1 [Vitis vinifera];; (*TAIR) AT2G24395.1 (e_value=5e-37) | Symbols: | chaperone protein dnaJ-related | chr2:10375497-10376081 FORWARD LENGTH=132;; (*ITAG) Solyc08g069230.2.1 (e_value=7e-64) genomic_reference:SL2.40ch08 gene_region:55485626-55490941 transcript_region:SL2.40ch08:55485626..55490941- functional_description:"Unknown Protein (AHRD V1)"; NbS00003203g0002.1 protein AED:0.50 eAED:0.50 QI:0|1|0|1|1|1|2|0|93; (*GB) gi|242039353|ref|XP_002467071.1| (e_value=2e-41) hypothetical protein SORBIDRAFT_01g019160 [Sorghum bicolor];; (*TAIR) AT3G59280.1 (e_value=4e-38) | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:21909266-21910519 REVERSE LENGTH=116;; (*ITAG) Solyc08g006120.2.1 (e_value=4e-52) genomic_reference:SL2.40ch08 gene_region:858597-863449 transcript_region:SL2.40ch08:858597..863449- go_terms:GO:0019904,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit TIM16 (AHRD V1 ***- B6UGA4_MAIZE); contains Interpro domain(s) IPR005341 Protein Transporter, Pam16 "; GO:0019904,GO:0015450 NbS00003203g0003.1 protein AED:0.46 eAED:0.87 QI:0|0|0|1|1|1|4|0|86 NbS00056214g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|224109520|ref|XP_002315223.1| (e_value=8e-108) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55420.1 (e_value=2e-81) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20547920-20548570 FORWARD LENGTH=216;; (*ITAG) Solyc05g054450.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63522312-63523001 transcript_region:SL2.40ch05:63522312..63523001+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029308g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.6|0.5|1|0.8|0.66|6|2324|869; (*GB) gi|255582335|ref|XP_002531958.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|Q8RX87|RFS6_ARATH (e_value=0.0) Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2;; (*TAIR) AT5G20250.4 (e_value=0.0) | Symbols: DIN10 | Raffinose synthase family protein | chr5:6833730-6836635 FORWARD LENGTH=844;; (*ITAG) Solyc07g007930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2591006-2595679 transcript_region:SL2.40ch07:2591006..2595679+ go_terms:GO:0006508 functional_description:"Alkaline alpha galactosidase 2 (AHRD V1 **-- Q575Z7_MAIZE); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0006508 NbS00023796g0005.1 protein AED:0.22 eAED:0.23 QI:4|0.57|0.55|0.95|0.57|0.55|20|0|936; (*GB) gi|255550896|ref|XP_002516496.1| (e_value=0.0) 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis];; (*SWP) sp|Q8LP17|CCD1_PEA (e_value=4e-50) Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1;; (*TAIR) AT3G63520.1 (e_value=4e-44) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538;; (*ITAG) Solyc08g066720.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:52751808-52753766 transcript_region:SL2.40ch08:52751808..52753766+ go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase (AHRD V1 **** B6UEM5_MAIZE); contains Interpro domain(s) IPR004294 Carotenoid oxygenase "; GO:0045549 NbS00003351g0001.1 protein AED:0.00 eAED:0.00 QI:423|-1|0|1|-1|1|1|0|636; (*GB) gi|147866064|emb|CAN80963.1| (e_value=0.0) hypothetical protein VITISV_005607 [Vitis vinifera];; (*TAIR) AT3G09520.1 (e_value=0.0) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00003351g0002.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|644; (*GB) gi|225439838|ref|XP_002274342.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267121 [Vitis vinifera];; (*TAIR) AT3G09520.1 (e_value=0.0) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:572674-574590 transcript_region:SL2.40ch09:572674..574590+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00008560g0002.1 protein AED:0.39 eAED:0.39 QI:0|0.63|0.58|0.91|0.90|0.91|12|1055|225; (*GB) gi|255582121|ref|XP_002531855.1| (e_value=2e-62) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9VUQ8|DCN1L_DROME (e_value=1e-23) DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=1 SV=2;; (*TAIR) AT3G28970.1 (e_value=2e-60) | Symbols: AAR3 | Domain of unknown function (DUF298) | chr3:10987970-10989782 REVERSE LENGTH=295;; (*ITAG) Solyc02g088010.2.1 (e_value=2e-80) genomic_reference:SL2.40ch02 gene_region:44817260-44822308 transcript_region:SL2.40ch02:44817260..44822308- functional_description:"DCN1-like protein 1 (AHRD V1 *-*- C1BQG1_9MAXI); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; NbS00008560g0017.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|0.66|0.5|4|0|599; (*GB) gi|225452841|ref|XP_002278445.1| (e_value=4e-125) PREDICTED: uncharacterized protein LOC100266209 [Vitis vinifera];; (*TAIR) AT5G39785.1 (e_value=2e-36) | Symbols: | Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606;; (*ITAG) Solyc02g087990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44800007-44803417 transcript_region:SL2.40ch02:44800007..44803417+ functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; NbS00008560g0014.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0.33|3|0|442; (*GB) gi|350535937|ref|NP_001234477.1| (e_value=9e-170) plasma membrane H+-ATPase [Solanum lycopersicum];; (*SWP) sp|Q08435|PMA1_NICPL (e_value=1e-170) Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1;; (*TAIR) AT5G62670.1 (e_value=8e-162) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc06g071100.2.1 (e_value=2e-172) genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00008560g0016.1 protein AED:0.27 eAED:0.34 QI:0|0|0|0.71|0.66|0.71|7|0|413; (*GB) gi|57015403|sp|Q43847.3|SSY2_SOLTU (e_value=2e-165) RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor;; (*SWP) sp|Q43847|SSY2_SOLTU (e_value=6e-167) Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3;; (*TAIR) AT3G01180.1 (e_value=2e-154) | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792;; (*ITAG) Solyc02g088000.2.1 (e_value=2e-170) genomic_reference:SL2.40ch02 gene_region:44808426-44814838 transcript_region:SL2.40ch02:44808426..44814838+ go_terms:GO:0004373,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 **** D5MJP6_9BACT); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00008560g0015.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|3|0|101; (*GB) gi|68300904|gb|AAY89383.1| (e_value=2e-57) starch synthase isoform 2 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q43847|SSY2_SOLTU (e_value=7e-52) Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3;; (*TAIR) AT3G01180.1 (e_value=3e-51) | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792;; (*ITAG) Solyc02g088000.2.1 (e_value=6e-53) genomic_reference:SL2.40ch02 gene_region:44808426-44814838 transcript_region:SL2.40ch02:44808426..44814838+ go_terms:GO:0004373,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 **** D5MJP6_9BACT); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00030280g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|224142903|ref|XP_002324772.1| (e_value=8e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74120.1 (e_value=1e-102) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:27871923-27873260 REVERSE LENGTH=445;; (*ITAG) Solyc09g097920.1.1 (e_value=9e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00030280g0005.1 protein AED:0.16 eAED:0.16 QI:1590|1|1|1|0.5|0.66|9|410|255; (*GB) gi|225433644|ref|XP_002264430.1| (e_value=1e-140) PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera];; (*SWP) sp|P50889|RS1_LEULA (e_value=9e-16) 40S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2;; (*TAIR) AT3G23700.1 (e_value=1e-125) | Symbols: | Nucleic acid-binding proteins superfamily | chr3:8531689-8533742 REVERSE LENGTH=392;; (*ITAG) Solyc09g097910.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:67170569-67174662 transcript_region:SL2.40ch09:67170569..67174662+ go_terms:GO:0042380 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 *--- PNP_ALHEH); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0042380 NbS00005502g0003.1 protein AED:0.20 eAED:0.20 QI:252|1|1|1|0.90|0.91|12|510|812; (*GB) gi|359489534|ref|XP_002273779.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260735 [Vitis vinifera];; (*TAIR) AT2G45460.2 (e_value=0.0) | Symbols: | SMAD/FHA domain-containing protein | chr2:18737054-18741690 REVERSE LENGTH=902;; (*ITAG) Solyc01g091500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76885279-76893140 transcript_region:SL2.40ch01:76885279..76893140- functional_description:"Forkhead-associated domain-containing protein (AHRD V1 ***- D7LCJ5_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00000281g0010.1 protein AED:0.08 eAED:0.08 QI:331|0.75|0.8|1|1|1|5|242|651; (*GB) gi|297737887|emb|CBI27088.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XA72|AB21G_ARATH (e_value=0.0) ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2;; (*TAIR) AT3G25620.2 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr3:9316677-9319505 REVERSE LENGTH=672;; (*ITAG) Solyc04g006960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:649479-653198 transcript_region:SL2.40ch04:649479..653198- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000281g0015.1 protein AED:0.14 eAED:0.14 QI:195|0.95|0.90|1|0.95|0.95|21|0|1036; (*GB) gi|149789412|gb|ABR29877.1| (e_value=0.0) phosphoenolpyruvate carboxylase [Ricinus communis];; (*SWP) sp|Q8GVE8|CAPP4_ARATH (e_value=0.0) Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1;; (*TAIR) AT1G68750.1 (e_value=0.0) | Symbols: ATPPC4, PPC4 | phosphoenolpyruvate carboxylase 4 | chr1:25822942-25828104 REVERSE LENGTH=1032;; (*ITAG) Solyc04g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:663594-674845 transcript_region:SL2.40ch04:663594..674845- go_terms:GO:0005515,GO:0008964 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 **** A6YM33_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core "; GO:0005515,GO:0008964 NbS00000281g0014.1 protein AED:0.17 eAED:0.17 QI:231|0.9|0.72|1|0.6|0.81|11|0|390; (*GB) gi|225423820|ref|XP_002277990.1| (e_value=0.0) PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [Vitis vinifera];; (*SWP) sp|Q8VYP9|ICML1_ARATH (e_value=4e-174) Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Arabidopsis thaliana GN=ICMEL1 PE=2 SV=1;; (*TAIR) AT1G26120.1 (e_value=3e-175) | Symbols: ICME-LIKE1 | alpha/beta-Hydrolases superfamily protein | chr1:9028656-9031402 REVERSE LENGTH=476;; (*ITAG) Solyc05g010050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4244724-4252159 transcript_region:SL2.40ch05:4244724..4252159- go_terms:GO:0010296 functional_description:"Alpha/beta hydrolase fold-3 (AHRD V1 *--- Q1BFL1_MYCSS); contains Interpro domain(s) IPR002018 Carboxylesterase, type B "; GO:0010296 NbS00012271g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|246; (*GB) gi|225458101|ref|XP_002280716.1| (e_value=4e-59) PREDICTED: probable salt tolerance-like protein At1g75540 [Vitis vinifera];; (*SWP) sp|Q9LQZ7|STHX_ARATH (e_value=3e-39) Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1;; (*TAIR) AT1G75540.1 (e_value=2e-40) | Symbols: STH2 | salt tolerance homolog2 | chr1:28366059-28367398 FORWARD LENGTH=331;; (*ITAG) Solyc12g089240.1.1 (e_value=5e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62792418-62794690 transcript_region:SL2.40ch12:62792418..62794690+ go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 3 (AHRD V1 *--- COL3_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00012271g0006.1 protein AED:0.27 eAED:0.27 QI:22|1|0.33|1|1|1|3|0|165; (*GB) gi|224085796|ref|XP_002307699.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43434|VATL_GOSHI (e_value=3e-75) V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=5e-76) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=9e-77) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00014014g0005.1 protein AED:0.09 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|275; (*GB) gi|255572820|ref|XP_002527342.1| (e_value=6e-31) hypothetical protein RCOM_0482310 [Ricinus communis];; (*TAIR) AT5G09620.1 (e_value=9e-29) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:2983757-2985352 REVERSE LENGTH=531;; (*ITAG) Solyc02g091670.1.1 (e_value=2e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47486948-47487760 transcript_region:SL2.40ch02:47486948..47487760- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00047550g0007.1 protein AED:0.17 eAED:0.17 QI:476|0.86|0.81|1|0.66|0.75|16|682|637; (*GB) gi|242091806|ref|XP_002436393.1| (e_value=0.0) hypothetical protein SORBIDRAFT_10g001730 [Sorghum bicolor];; (*SWP) sp|Q7T0Q5|NOL10_XENLA (e_value=1e-112) Nucleolar protein 10 OS=Xenopus laevis GN=nol10 PE=2 SV=1;; (*TAIR) AT3G56990.1 (e_value=1e-122) | Symbols: EDA7 | embryo sac development arrest 7 | chr3:21088358-21091976 REVERSE LENGTH=711;; (*ITAG) Solyc10g085580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64023741-64035339 transcript_region:SL2.40ch10:64023741..64035339+ go_terms:GO:0005634 functional_description:"Nucleolar protein 10 (AHRD V1 **-- B6UCL1_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005634 NbS00021049g0002.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|0|0|4|0|148; (*ITAG) Solyc09g008110.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbC26065859g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|119 NbS00020583g0008.1 protein AED:0.15 eAED:0.15 QI:465|1|1|1|0.8|0.66|6|685|463; (*GB) gi|255586905|ref|XP_002534057.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q99624|S38A3_HUMAN (e_value=1e-25) Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1;; (*TAIR) AT3G30390.2 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460;; (*ITAG) Solyc02g089400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45808288-45812363 transcript_region:SL2.40ch02:45808288..45812363- functional_description:"Amino acid transporter (AHRD V1 ***- B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00020583g0009.1 protein AED:0.06 eAED:0.06 QI:443|0.85|0.8|1|0.85|0.86|15|2336|1352; (*GB) gi|225451864|ref|XP_002278588.1| (e_value=0.0) PREDICTED: protein furry homolog-like [Vitis vinifera];; (*SWP) sp|O94915|FRYL_HUMAN (e_value=2e-37) Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2;; (*TAIR) AT5G15680.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:5101188-5110793 REVERSE LENGTH=2153;; (*ITAG) Solyc02g089370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45792081-45806674 transcript_region:SL2.40ch02:45792081..45806674+ functional_description:"Cell morphogenesis protein (AHRD V1 *--- C0NPN9_AJECG)"; NbS00047432g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.55|0.7|1|1|1|10|104|600; (*GB) gi|255572779|ref|XP_002527322.1| (e_value=0.0) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q42556|PMA9_ARATH (e_value=0.0) ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2;; (*TAIR) AT1G80660.1 (e_value=0.0) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc00g257110.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:20272521-20276002 transcript_region:SL2.40ch00:20272521..20276002- go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00026638g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.76|0.64|0.78|0.53|0.78|14|0|465; (*GB) gi|116047949|gb|ABJ53200.1| (e_value=0.0) myosin VIII-1 [Nicotiana benthamiana];; (*SWP) sp|P08799|MYS2_DICDI (e_value=5e-114) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT3G19960.1 (e_value=0.0) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc02g020910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:11008922-11043707 transcript_region:SL2.40ch02:11008922..11043707+ go_terms:GO:0060001 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00022561g0004.1 protein AED:0.15 eAED:0.15 QI:180|0.6|0.5|1|0.6|0.83|6|0|267; (*GB) gi|219688708|dbj|BAH09867.1| (e_value=1e-131) peroxin 12 [Nicotiana tabacum];; (*SWP) sp|Q9M841|PEX12_ARATH (e_value=6e-90) Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12 PE=1 SV=2;; (*TAIR) AT3G04460.1 (e_value=5e-91) | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3:1186641-1189094 FORWARD LENGTH=393;; (*ITAG) Solyc05g054950.2.1 (e_value=2e-120) genomic_reference:SL2.40ch05 gene_region:63884549-63891458 transcript_region:SL2.40ch05:63884549..63891458+ go_terms:GO:0008022,GO:0008270 functional_description:"Peroxisome assembly protein 12 (AHRD V1 ***- C0HB20_SALSA); contains Interpro domain(s) IPR017375 Peroxisome assembly, p12 "; GO:0008022,GO:0008270 NbS00035473g0003.1 protein AED:0.30 eAED:0.30 QI:119|1|1|1|1|1|12|334|519; (*GB) gi|225462348|ref|XP_002269152.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 37 [Vitis vinifera];; (*SWP) sp|Q941Q3|C3H37_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1;; (*TAIR) AT3G12680.1 (e_value=0.0) | Symbols: HUA1 | floral homeotic protein (HUA1) | chr3:4025276-4028999 REVERSE LENGTH=524;; (*ITAG) Solyc12g017410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6660084-6668349 transcript_region:SL2.40ch12:6660084..6668349- go_terms:GO:0003723 functional_description:"Zinc finger CCCH domain-containing protein 37 (AHRD V1 ***- C3H37_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003723 NbS00025884g0003.1 protein AED:0.26 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|356500064|ref|XP_003518854.1| (e_value=3e-34) PREDICTED: uncharacterized protein LOC100803045 [Glycine max];; (*TAIR) AT2G26530.1 (e_value=5e-20) | Symbols: AR781 | Protein of unknown function (DUF1645) | chr2:11283036-11283989 REVERSE LENGTH=317;; (*ITAG) Solyc01g108440.2.1 (e_value=2e-72) genomic_reference:SL2.40ch01 gene_region:87531095-87532380 transcript_region:SL2.40ch01:87531095..87532380- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00047092g0009.1 protein AED:0.10 eAED:0.10 QI:66|0.87|0.66|0.88|0.87|0.88|9|260|878; (*GB) gi|387940580|gb|AFK13154.1| (e_value=0.0) spike 1 [Gossypium arboreum];; (*SWP) sp|Q8NF50|DOCK8_HUMAN (e_value=2e-46) Dedicator of cytokinesis protein 8 OS=Homo sapiens GN=DOCK8 PE=1 SV=3;; (*TAIR) AT4G16340.1 (e_value=0.0) | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830;; (*ITAG) Solyc08g016050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6509200-6527218 transcript_region:SL2.40ch08:6509200..6527218- go_terms:GO:0042802 functional_description:"Dedicator of cytokinesis family protein (AHRD V1 ***- A8P5S7_BRUMA); contains Interpro domain(s) IPR010703 Dedicator of cytokinesis "; GO:0042802 NbS00047092g0010.1 protein AED:0.09 eAED:0.19 QI:45|0.5|0.33|1|0|0.33|3|0|131; (*GB) gi|224113875|ref|XP_002316600.1| (e_value=1e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT4G16340.1 (e_value=3e-75) | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830;; (*ITAG) Solyc08g016060.1.1 (e_value=8e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:6524269-6534067 transcript_region:SL2.40ch08:6524269..6534067- functional_description:"Dedicator of cytokinesis 8 (AHRD V1 *-*- B9EJ70_MOUSE)"; NbS00007390g0007.1 protein AED:0.44 eAED:0.50 QI:119|0.2|0.5|0.66|1|1|6|387|214; (*GB) gi|225453329|ref|XP_002270593.1| (e_value=2e-45) PREDICTED: tubulin-specific chaperone A [Vitis vinifera];; (*SWP) sp|O04350|TBCA_ARATH (e_value=3e-44) Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410 PE=1 SV=2;; (*TAIR) AT2G30410.2 (e_value=3e-45) | Symbols: KIS | tubulin folding cofactor A (KIESEL) | chr2:12959812-12960552 FORWARD LENGTH=113;; (*ITAG) Solyc01g068400.2.1 (e_value=8e-22) genomic_reference:SL2.40ch01 gene_region:70011635-70020149 transcript_region:SL2.40ch01:70011635..70020149+ go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone A (AHRD V1 **** C1C4Y4_RANCA); contains Interpro domain(s) IPR004226 Tubulin binding cofactor A "; GO:0051087 NbS00007599g0011.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|1|1|2|0|377; (*GB) gi|255575900|ref|XP_002528847.1| (e_value=1e-138) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=3e-60) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT4G26890.1 (e_value=4e-70) | Symbols: MAPKKK16 | mitogen-activated protein kinase kinase kinase 16 | chr4:13512072-13513406 FORWARD LENGTH=444;; (*ITAG) Solyc01g103240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83654054-83655666 transcript_region:SL2.40ch01:83654054..83655666+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007599g0014.1 protein AED:0.19 eAED:0.19 QI:334|1|1|1|0.5|0.66|3|405|112; (*GB) gi|115463957|ref|NP_001055578.1| (e_value=1e-72) Os05g0420600 [Oryza sativa Japonica Group];; (*SWP) sp|Q0DI31|CYC_ORYSJ (e_value=3e-74) Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1;; (*TAIR) AT4G10040.1 (e_value=3e-72) | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-6278281 FORWARD LENGTH=112;; (*ITAG) Solyc01g103220.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:83625084-83629542 transcript_region:SL2.40ch01:83625084..83629542+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00007599g0013.1 protein AED:0.24 eAED:0.25 QI:243|0.84|0.9|0.95|0.68|0.7|20|295|939; (*GB) gi|297739499|emb|CBI29681.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q69ZF3|GBA2_MOUSE (e_value=6e-168) Non-lysosomal glucosylceramidase OS=Mus musculus GN=Gba2 PE=2 SV=2;; (*TAIR) AT5G49900.1 (e_value=0.0) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr5:20297235-20302019 REVERSE LENGTH=957;; (*ITAG) Solyc01g103230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83638757-83653587 transcript_region:SL2.40ch01:83638757..83653587+ go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9SS77_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00030388g0001.1 protein AED:0.36 eAED:0.60 QI:0|0|0|1|1|1|3|0|113 NbS00021165g0010.1 protein AED:0.06 eAED:0.06 QI:16|1|1|1|1|1|8|332|640; (*GB) gi|359481698|ref|XP_002277149.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-80) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G37980.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638;; (*ITAG) Solyc09g011860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5131897-5135504 transcript_region:SL2.40ch09:5131897..5135504- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00021165g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|359481702|ref|XP_003632661.1| (e_value=1e-110) PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SR77|HBPL1_ARATH (e_value=4e-19) Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1;; (*TAIR) AT2G37970.1 (e_value=6e-97) | Symbols: SOUL-1 | SOUL heme-binding family protein | chr2:15891027-15891704 FORWARD LENGTH=225;; (*ITAG) Solyc10g085040.1.1 (e_value=7e-130) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63684986-63685585 transcript_region:SL2.40ch10:63684986..63685585+ functional_description:"Soul heme-binding family protein (AHRD V1 ***- D7LKR5_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; NbS00058864g0003.1 protein AED:0.12 eAED:0.12 QI:272|1|0.88|1|0.5|0.44|9|0|653; (*GB) gi|225425605|ref|XP_002265829.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 2 [Vitis vinifera];; (*SWP) sp|Q9CAL3|CRK2_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1;; (*TAIR) AT1G70520.1 (e_value=0.0) | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2 | chr1:26584888-26587334 REVERSE LENGTH=649;; (*ITAG) Solyc01g007960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2149842-2152519 transcript_region:SL2.40ch01:2149842..2152519+ go_terms:GO:0019199,GO:0004674 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0019199,GO:0004674 NbS00028749g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|255553011|ref|XP_002517548.1| (e_value=6e-24) Gibberellin 20 oxidase, putative [Ricinus communis];; (*TAIR) AT1G52800.1 (e_value=2e-23) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067860.2.1 (e_value=3e-25) genomic_reference:SL2.40ch06 gene_region:38448249-38449744 transcript_region:SL2.40ch06:38448249..38449744- go_terms:GO:0016706 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 **** Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00028749g0003.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.33|1|1|3|0|127; (*GB) gi|225442749|ref|XP_002284974.1| (e_value=2e-18) PREDICTED: gibberellin 20 oxidase 1 [Vitis vinifera];; (*TAIR) AT1G52790.1 (e_value=1e-14) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19662194-19663301 REVERSE LENGTH=310;; (*ITAG) Solyc06g067870.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00005367g0010.1 protein AED:0.05 eAED:0.05 QI:207|1|0.5|1|0|0|2|0|467; (*GB) gi|224140797|ref|XP_002323765.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EC97|FBL14_ARATH (e_value=0.0) F-box/LRR-repeat protein 14 OS=Arabidopsis thaliana GN=FBL14 PE=2 SV=1;; (*TAIR) AT1G80570.1 (e_value=0.0) | Symbols: | RNI-like superfamily protein | chr1:30290828-30292231 FORWARD LENGTH=467;; (*ITAG) Solyc09g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4706115-4707518 transcript_region:SL2.40ch09:4706115..4707518+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- FBL14_ARATH); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0004842 NbS00005367g0016.1 protein AED:0.21 eAED:0.21 QI:0|1|0.33|1|1|1|3|0|505; (*GB) gi|118486369|gb|ABK95025.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|O04866|ARGD_ALNGL (e_value=0.0) Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1;; (*TAIR) AT1G80600.1 (e_value=0.0) | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298675-30300513 REVERSE LENGTH=457;; (*ITAG) Solyc08g080370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60840952-60844640 transcript_region:SL2.40ch08:60840952..60844640+ go_terms:GO:0003992 functional_description:"Acetylornithine aminotransferase (AHRD V1 **** D8THT2_VOLCA); contains Interpro domain(s) IPR004636 Acetylornithine and succinylornithine aminotransferase "; GO:0003992 NbS00005367g0018.1 protein AED:0.23 eAED:0.24 QI:0|0.55|0.47|0.84|0.55|0.63|19|211|922; (*GB) gi|218187756|gb|EEC70183.1| (e_value=2e-119) hypothetical protein OsI_00912 [Oryza sativa Indica Group];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=6e-111) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=1e-112) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc10g083630.1.1 (e_value=5e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00005367g0020.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.8|0.75|1|5|0|261; (*GB) gi|83283983|gb|ABC01899.1| (e_value=5e-110) glycoprotein endopeptidase-like protein [Solanum tuberosum];; (*SWP) sp|Q7SYR1|OSGEP_XENLA (e_value=6e-81) Probable tRNA threonylcarbamoyladenosine biosynthesis protein osgep OS=Xenopus laevis GN=osgep PE=2 SV=1;; (*TAIR) AT4G22720.2 (e_value=3e-110) | Symbols: | Actin-like ATPase superfamily protein | chr4:11937467-11938717 FORWARD LENGTH=353;; (*ITAG) Solyc02g068750.1.1 (e_value=6e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33256570-33257610 transcript_region:SL2.40ch02:33256570..33257610+ go_terms:GO:0005515 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6TBH3_MAIZE); contains Interpro domain(s) IPR009180 Peptidase M22, O-sialoglycoprotein endopeptidase "; GO:0005515 NbS00044114g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.33|1|1|3|0|158; (*GB) gi|255559591|ref|XP_002520815.1| (e_value=3e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G05360.2 (e_value=9e-36) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:1588356-1589044 FORWARD LENGTH=153;; (*ITAG) Solyc06g050730.2.1 (e_value=5e-50) genomic_reference:SL2.40ch06 gene_region:29994029-29995792 transcript_region:SL2.40ch06:29994029..29995792- functional_description:"Genomic DNA chromosome 5 TAC clone K18I23 (AHRD V1 *-*- Q9FLB8_ARATH); contains Interpro domain(s) IPR006597 Sel1-like "; NbS00004363g0001.1 protein AED:0.07 eAED:0.08 QI:302|0|0.5|1|0|0.5|2|0|627; (*GB) gi|225438894|ref|XP_002279137.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SZT8|PP354_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1;; (*TAIR) AT4G37380.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17572040-17573938 REVERSE LENGTH=632;; (*ITAG) Solyc01g081020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72835705-72837579 transcript_region:SL2.40ch01:72835705..72837579- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MAN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00004363g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|289; (*GB) gi|255544896|ref|XP_002513509.1| (e_value=0.0) nucleolar GTP-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=0.0) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=0.0) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc01g081010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72829845-72833676 transcript_region:SL2.40ch01:72829845..72833676- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00004363g0003.1 protein AED:0.34 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|224104135|ref|XP_002313333.1| (e_value=4e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=7e-65) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=5e-66) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc07g053730.2.1 (e_value=7e-99) genomic_reference:SL2.40ch07 gene_region:59475787-59478249 transcript_region:SL2.40ch07:59475787..59478249- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00004363g0004.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|90; (*ITAG) Solyc07g053730.2.1 (e_value=1e-19) genomic_reference:SL2.40ch07 gene_region:59475787-59478249 transcript_region:SL2.40ch07:59475787..59478249- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00004363g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|339; (*GB) gi|255568063|ref|XP_002525008.1| (e_value=4e-76) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=1e-66) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=9e-68) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc01g081000.2.1 (e_value=1e-138) genomic_reference:SL2.40ch01 gene_region:72826578-72827678 transcript_region:SL2.40ch01:72826578..72827678- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR010822 Sporulation stage II, protein E C-terminal "; GO:0004722 NbS00027497g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|253; (*GB) gi|359480144|ref|XP_002269420.2| (e_value=9e-95) PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FKC3|PP424_ARATH (e_value=6e-86) Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2;; (*TAIR) AT5G48730.1 (e_value=4e-87) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19763152-19765136 FORWARD LENGTH=508;; (*ITAG) Solyc01g006500.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:1089833-1093094 transcript_region:SL2.40ch01:1089833..1093094- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027497g0014.1 protein AED:0.14 eAED:0.14 QI:52|0.85|0.87|1|0.85|0.87|8|185|623; (*GB) gi|297746392|emb|CBI16448.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A1K5T6|Y1574_AZOSB (e_value=1e-158) UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1;; (*TAIR) AT5G13030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). | chr5:4133216-4136461 FORWARD LENGTH=633;; (*ITAG) Solyc01g006490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1081667-1087120 transcript_region:SL2.40ch01:1081667..1087120- functional_description:"Protein YdiU (AHRD V1 ***- B5N5F2_SALET); contains Interpro domain(s) IPR003846 Uncharacterised protein family UPF0061 "; NbS00027497g0011.1 protein AED:0.20 eAED:0.20 QI:241|1|1|1|1|1|2|737|116; (*GB) gi|225435598|ref|XP_002285621.1| (e_value=6e-39) PREDICTED: uncharacterized protein LOC100251931 [Vitis vinifera];; (*TAIR) AT5G19630.1 (e_value=5e-38) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6628147-6629937 REVERSE LENGTH=228;; (*ITAG) Solyc01g006480.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:1074151-1078328 transcript_region:SL2.40ch01:1074151..1078328+ functional_description:"Alpha/beta hydrolase (AHRD V1 ***- Q83AV9_COXBU)"; NbS00027497g0009.1 protein AED:0.51 eAED:0.93 QI:0|0|0|1|0.5|0.66|3|0|249; (*GB) gi|359480144|ref|XP_002269420.2| (e_value=2e-118) PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FKC3|PP424_ARATH (e_value=8e-114) Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2;; (*TAIR) AT5G48730.1 (e_value=6e-115) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19763152-19765136 FORWARD LENGTH=508;; (*ITAG) Solyc01g006500.2.1 (e_value=3e-136) genomic_reference:SL2.40ch01 gene_region:1089833-1093094 transcript_region:SL2.40ch01:1089833..1093094- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00035809g0003.1 protein AED:0.48 eAED:0.71 QI:0|0|0|1|1|1|4|0|69 NbS00003010g0001.1 protein AED:0.07 eAED:0.07 QI:121|0.83|0.85|1|0.83|0.71|7|100|383; (*GB) gi|224108043|ref|XP_002314701.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05370.1 (e_value=4e-153) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:1569418-1572280 REVERSE LENGTH=417;; (*ITAG) Solyc09g075970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63110707-63114394 transcript_region:SL2.40ch09:63110707..63114394- functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q10PW5_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00000072g0013.1 protein AED:0.28 eAED:0.28 QI:18|0.75|0.6|1|0.25|0.2|5|281|203; (*GB) gi|255539825|ref|XP_002510977.1| (e_value=9e-80) ribosomal protein L15, putative [Ricinus communis];; (*SWP) sp|O82528|RL15_PETHY (e_value=9e-78) 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1;; (*TAIR) AT4G16720.1 (e_value=6e-74) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204;; (*ITAG) Solyc06g060400.2.1 (e_value=5e-84) genomic_reference:SL2.40ch06 gene_region:34803093-34805179 transcript_region:SL2.40ch06:34803093..34805179- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbS00000072g0012.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|1|1|2|528|94; (*GB) gi|224052867|ref|XP_002297620.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55365.1 (e_value=3e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20673983-20674363 REVERSE LENGTH=126;; (*ITAG) Solyc11g042440.1.1 (e_value=5e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:31827516-31827830 transcript_region:SL2.40ch11:31827516..31827830- functional_description:"Genomic DNA chromosome 5 P1 clone MKN22 (AHRD V1 ***- Q9LVC2_ARATH)"; NbS00005934g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.9|0.90|11|280|662; (*GB) gi|350539581|ref|NP_001234712.1| (e_value=0.0) Lyk3 precursor [Solanum lycopersicum];; (*SWP) sp|O65530|PEK14_ARATH (e_value=2e-59) Proline-rich receptor-like protein kinase PERK14 OS=Arabidopsis thaliana GN=PERK14 PE=2 SV=1;; (*TAIR) AT1G51940.1 (e_value=0.0) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651;; (*ITAG) Solyc03g121050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63329506-63336332 transcript_region:SL2.40ch03:63329506..63336332- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like kinase (AHRD V1 *-*- C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00005934g0006.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|323; (*GB) gi|224054408|ref|XP_002298245.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LIG0|Y3136_ARATH (e_value=0.0) Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1;; (*TAIR) AT3G21360.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330;; (*ITAG) Solyc03g121040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63326457-63329185 transcript_region:SL2.40ch03:63326457..63329185+ go_terms:GO:0055114 functional_description:"Taurine catabolism dioxygenase TauD/TfdA family (AHRD V1 ***- C4AZM2_BURMA); contains Interpro domain(s) IPR003819 Taurine catabolism dioxygenase TauD/TfdA "; GO:0055114 NbS00005934g0116.1 protein AED:0.19 eAED:0.19 QI:107|0.87|0.76|1|0.68|0.76|17|0|1064 NbS00005934g0117.1 protein AED:0.25 eAED:0.59 QI:0|0|0|1|0|0.5|2|0|61 NbS00005934g0120.1 protein AED:0.26 eAED:0.26 QI:0|0.84|0.78|0.85|0.84|0.78|14|314|486 NbS00005934g0107.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|206 NbS00005934g0114.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.33|1|1|3|0|126 NbS00021597g0017.1 protein AED:0.01 eAED:0.01 QI:208|1|0.66|1|1|1|3|0|539; (*GB) gi|224093384|ref|XP_002309906.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc03g078090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:43597039-43600438 transcript_region:SL2.40ch03:43597039..43600438+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00021597g0006.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|320; (*GB) gi|225427663|ref|XP_002274239.1| (e_value=6e-135) PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Vitis vinifera];; (*SWP) sp|O24645|HCBT1_DIACA (e_value=3e-19) Anthranilate N-benzoyltransferase protein 1 OS=Dianthus caryophyllus GN=HCBT1 PE=1 SV=1;; (*TAIR) AT1G31490.1 (e_value=2e-129) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:11271744-11273078 REVERSE LENGTH=444;; (*ITAG) Solyc03g078130.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43651797-43653398 transcript_region:SL2.40ch03:43651797..43653398+ go_terms:GO:0016747 functional_description:"Anthranilate N-benzoyltransferase protein 1 (AHRD V1 **-- HCBT1_DIACA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00021597g0021.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|0|0.5|2|0|91; (*GB) gi|113205445|gb|AAW28576.2| (e_value=9e-23) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=5e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00021597g0019.1 protein AED:0.40 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|142; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-17) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc00g105750.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15950858-15953790 transcript_region:SL2.40ch00:15950858..15953790+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00021597g0018.1 protein AED:0.36 eAED:0.36 QI:0|1|0.33|1|1|1|3|0|126; (*GB) gi|76573321|gb|ABA46765.1| (e_value=1e-75) unknown [Solanum tuberosum];; (*SWP) sp|P34788|RS18_ARATH (e_value=7e-73) 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1;; (*TAIR) AT4G09800.1 (e_value=5e-74) | Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152;; (*ITAG) Solyc03g078290.2.1 (e_value=7e-80) genomic_reference:SL2.40ch03 gene_region:43867765-43870061 transcript_region:SL2.40ch03:43867765..43870061+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S18 (AHRD V1 ***- B4G286_MAIZE); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003735,GO:0005515 NbS00021597g0015.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.25|1|1|8|0|404; (*GB) gi|113205445|gb|AAW28576.2| (e_value=7e-16) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00021597g0020.1 protein AED:0.51 eAED:0.59 QI:11|0|0|1|0|0|2|0|110 NbS00001312g0017.1 protein AED:0.13 eAED:0.13 QI:47|0.91|0.92|1|0.83|0.92|13|463|660; (*GB) gi|255549605|ref|XP_002515854.1| (e_value=0.0) molybdopterin biosynthesis protein, putative [Ricinus communis];; (*SWP) sp|Q39054|CNX1_ARATH (e_value=0.0) Molybdopterin biosynthesis protein CNX1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=2;; (*TAIR) AT5G20990.1 (e_value=0.0) | Symbols: B73, SIR4, CNX, CHL6, CNX1 | molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1) | chr5:7128737-7133397 REVERSE LENGTH=670;; (*ITAG) Solyc01g009050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3045561-3064835 transcript_region:SL2.40ch01:3045561..3064835- go_terms:GO:0032324,GO:0006777 functional_description:"Molybdenum cofactor biosynthesis protein (AHRD V1 ***- Q309F9_MAIZE); contains Interpro domain(s) IPR005110 MoeA, N-terminal, domain I and II "; GO:0032324,GO:0006777 NbS00001312g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|255764587|gb|ACU33853.1| (e_value=1e-28) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q0WKV3|PPR36_ARATH (e_value=5e-15) Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1;; (*TAIR) AT1G12300.1 (e_value=4e-16) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637;; (*ITAG) Solyc06g007280.2.1 (e_value=3e-32) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00001312g0009.1 protein AED:0.13 eAED:0.09 QI:825|1|0.87|1|0.71|0.87|8|167|242; (*GB) gi|7271222|emb|CAB81558.1| (e_value=3e-171) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P25012|CCNB2_SOYBN (e_value=2e-114) G2/mitotic-specific cyclin S13-7 (Fragment) OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G26760.1 (e_value=3e-110) | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401551-11403205 FORWARD LENGTH=387;; (*ITAG) Solyc01g009040.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:3041736-3044740 transcript_region:SL2.40ch01:3041736..3044740+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbS00001312g0010.1 protein AED:0.14 eAED:0.14 QI:169|1|1|1|0.84|0.92|14|327|598; (*GB) gi|359479309|ref|XP_003632255.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242629 [Vitis vinifera];; (*SWP) sp|Q55GJ3|NCA2_DICDI (e_value=1e-14) Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum GN=nca2 PE=3 SV=1;; (*TAIR) AT5G12290.1 (e_value=0.0) | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974374-3978066 REVERSE LENGTH=602;; (*ITAG) Solyc01g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3025820-3038891 transcript_region:SL2.40ch01:3025820..3038891+ functional_description:"Nuclear control of ATPase protein (AHRD V1 *--- C9SK53_VERA1); contains Interpro domain(s) IPR013946 Nuclear control of ATP synthase 2 "; NbS00001312g0012.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|121; (*GB) gi|22128591|gb|AAM52341.1| (e_value=5e-45) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=8e-18) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=6e-19) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=6e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005579g0014.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0.5|0.66|3|0|312; (*GB) gi|224143179|ref|XP_002324871.1| (e_value=4e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3E7Q9|GLYT6_ARATH (e_value=1e-130) Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2;; (*TAIR) AT5G25310.1 (e_value=8e-132) | Symbols: | Exostosin family protein | chr5:8784820-8787235 FORWARD LENGTH=480;; (*ITAG) Solyc08g042010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28659345-28663693 transcript_region:SL2.40ch08:28659345..28663693+ go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M3X2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00005579g0013.1 protein AED:0.15 eAED:0.11 QI:0|1|0.42|1|0.83|0.85|7|0|814; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*TAIR) AT2G25320.1 (e_value=0.0) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00035608g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|4|0|511; (*GB) gi|357453591|ref|XP_003597073.1| (e_value=3e-110) Kinase-like protein [Medicago truncatula];; (*SWP) sp|O64477|Y2913_ARATH (e_value=6e-84) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=5e-85) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc05g008310.2.1 (e_value=6e-121) genomic_reference:SL2.40ch05 gene_region:2684709-2689587 transcript_region:SL2.40ch05:2684709..2689587- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00012124g0013.1 protein AED:0.25 eAED:0.25 QI:272|0.57|0.75|0.87|0.71|0.62|8|916|265; (*GB) gi|356524503|ref|XP_003530868.1| (e_value=2e-80) PREDICTED: ubiquitin fusion degradation protein 1 homolog [Glycine max];; (*SWP) sp|Q55BK0|UFD1_DICDI (e_value=1e-39) Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1;; (*TAIR) AT4G38930.1 (e_value=7e-74) | Symbols: | Ubiquitin fusion degradation UFD1 family protein | chr4:18149907-18151616 FORWARD LENGTH=311;; (*ITAG) Solyc01g110410.2.1 (e_value=3e-76) genomic_reference:SL2.40ch01 gene_region:88875329-88881371 transcript_region:SL2.40ch01:88875329..88881371- go_terms:GO:0005515 functional_description:"Ubiquitin fusion-degradation protein-like (AHRD V1 ***- Q307X2_SOLTU); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 "; GO:0005515 NbS00012124g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|124 NbS00012124g0007.1 protein AED:0.51 eAED:0.60 QI:103|0.2|0.33|0.83|1|1|6|0|125; (*GB) gi|297802490|ref|XP_002869129.1| (e_value=2e-22) hypothetical protein ARALYDRAFT_912916 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q945M1|NDUB9_ARATH (e_value=2e-23) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1;; (*TAIR) AT4G34700.1 (e_value=2e-24) | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster biogenesis protein | chr4:16556874-16558362 FORWARD LENGTH=117;; (*ITAG) Solyc01g110390.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:88860841-88872420 transcript_region:SL2.40ch01:88860841..88872420+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB9_MOUSE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0005515,GO:0008137 NbS00012124g0019.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0|2|152|79 NbS00012124g0018.1 protein AED:0.33 eAED:0.33 QI:188|0.33|0.5|1|0.33|0.5|4|474|148; (*GB) gi|224085796|ref|XP_002307699.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43434|VATL_GOSHI (e_value=4e-52) V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=8e-53) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00012124g0009.1 protein AED:0.22 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|107 NbC24188040g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|307136447|gb|ADN34252.1| (e_value=1e-11) hypothetical zinc finger protein [Cucumis melo subsp. melo];; (*TAIR) AT3G02340.1 (e_value=3e-12) | Symbols: | RING/U-box superfamily protein | chr3:477032-478261 FORWARD LENGTH=409;; (*ITAG) Solyc11g011570.1.1 (e_value=5e-33) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4638052-4639160 transcript_region:SL2.40ch11:4638052..4639160- go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_DANRE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00012182g0004.1 protein AED:0.21 eAED:0.21 QI:39|0.68|0.52|0.94|1|1|17|0|940; (*GB) gi|212960446|gb|ACJ38667.1| (e_value=0.0) cellulose synthase [Betula luminifera];; (*SWP) sp|Q851L8|CESA5_ORYSJ (e_value=0.0) Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc04g072790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57357329-57361881 transcript_region:SL2.40ch04:57357329..57361881- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B8XPP7_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00019822g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|149; (*GB) gi|388515547|gb|AFK45835.1| (e_value=9e-61) unknown [Medicago truncatula];; (*TAIR) AT3G21400.1 (e_value=1e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7534824-7536293 REVERSE LENGTH=188;; (*ITAG) Solyc01g067080.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:67802390-67803984 transcript_region:SL2.40ch01:67802390..67803984- functional_description:"Genomic DNA chromosome 3 P1 clone MHC9 (AHRD V1 ***- Q9LIF6_ARATH)"; NbS00019822g0007.1 protein AED:0.17 eAED:0.17 QI:381|1|1|1|0.66|0.5|10|1378|316; (*GB) gi|224107339|ref|XP_002314452.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q29RM1|TPC_BOVIN (e_value=7e-62) Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1;; (*TAIR) AT5G48970.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:19857028-19859374 REVERSE LENGTH=339;; (*ITAG) Solyc01g067070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67794977-67801339 transcript_region:SL2.40ch01:67794977..67801339+ go_terms:GO:0030233 functional_description:"Mitochondrial deoxynucleotide carrier (AHRD V1 **** B4FIJ0_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00019822g0103.1 protein AED:0.19 eAED:0.19 QI:44|0|0.5|1|0|0.5|2|0|315 NbS00019822g0105.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0|2|296|403 NbS00052817g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225432712|ref|XP_002282836.1| (e_value=7e-74) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*SWP) sp|P05332|YP20_BACLI (e_value=2e-16) Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis GN=p20 PE=4 SV=1;; (*TAIR) AT2G32030.1 (e_value=7e-66) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc06g054090.1.1 (e_value=6e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33417119-33417700 transcript_region:SL2.40ch06:33417119..33417700- go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 **** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00002897g0007.1 protein AED:0.25 eAED:0.26 QI:0|0.71|0.75|1|0.71|0.87|8|264|442; (*GB) gi|225436765|ref|XP_002267320.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84W91|C3H32_ARATH (e_value=7e-171) Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2;; (*TAIR) AT2G47850.3 (e_value=5e-172) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=468;; (*ITAG) Solyc09g074640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61952322-61957433 transcript_region:SL2.40ch09:61952322..61957433- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 32 (AHRD V1 ***- C3H32_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00002897g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.5|0.75|1|1|4|0|609; (*GB) gi|359479751|ref|XP_002267241.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SA69|Y1301_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1;; (*TAIR) AT1G03010.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634;; (*ITAG) Solyc09g074630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61949651-61951803 transcript_region:SL2.40ch09:61949651..61951803+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KCA4_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00034762g0002.1 protein AED:0.17 eAED:0.17 QI:225|0.87|0.88|1|0.87|0.88|9|325|381; (*GB) gi|357521467|ref|XP_003631022.1| (e_value=8e-154) Zinc finger protein [Medicago truncatula];; (*SWP) sp|O43670|ZN207_HUMAN (e_value=1e-36) Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 PE=1 SV=1;; (*TAIR) AT1G30970.1 (e_value=5e-130) | Symbols: SUF4 | zinc finger (C2H2 type) family protein | chr1:11040613-11043593 REVERSE LENGTH=367;; (*ITAG) Solyc02g081620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40082180-40089741 transcript_region:SL2.40ch02:40082180..40089741+ go_terms:GO:0003677,GO:0005622 functional_description:"Zinc finger protein 207 (AHRD V1 *-*- Q28FC3_XENTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003677,GO:0005622 NbS00034762g0001.1 protein AED:0.27 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc08g044370.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00034762g0003.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.4|1|1|5|0|199 NbS00019048g0001.1 protein AED:0.06 eAED:0.06 QI:16|1|1|1|0.5|0.33|3|486|1091; (*GB) gi|224097752|ref|XP_002311067.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g096190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51516314-51519526 transcript_region:SL2.40ch03:51516314..51519526+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00019411g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.72|1|0.6|0.63|11|0|539; (*GB) gi|350534874|ref|NP_001233908.1| (e_value=0.0) AP2 transcription factor SlAP2b [Solanum lycopersicum];; (*SWP) sp|P47927|AP2_ARATH (e_value=1e-106) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=9e-108) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc02g064960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30651561-30655131 transcript_region:SL2.40ch02:30651561..30655131+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00038596g0010.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0|1|0.5|0.33|3|0|350; (*GB) gi|21105757|gb|AAM34777.1|AF509877_1 (e_value=5e-128) nam-like protein 14, partial [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=1e-82) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=8e-84) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc02g088180.2.1 (e_value=3e-116) genomic_reference:SL2.40ch02 gene_region:44915098-44916628 transcript_region:SL2.40ch02:44915098..44916628+ go_terms:GO:0003700 functional_description:"NAC domain protein (AHRD V1 ***- C0KLH1_PONTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00038596g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|0.5|2|0|135; (*ITAG) Solyc01g073870.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00026488g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|296084596|emb|CBI25617.3| (e_value=7e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=4e-26) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=5e-26) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00027703g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc04g011660.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4125296-4126710 transcript_region:SL2.40ch04:4125296..4126710+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00027703g0005.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.2|1|1|5|0|214; (*GB) gi|225446345|ref|XP_002272406.1| (e_value=4e-45) PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=1e-27) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT2G20700.1 (e_value=7e-42) | Symbols: LLG2 | LORELEI-LIKE-GPI ANCHORED PROTEIN 2 | chr2:8925003-8925714 REVERSE LENGTH=163;; (*ITAG) Solyc10g008360.2.1 (e_value=1e-82) genomic_reference:SL2.40ch10 gene_region:2487795-2489641 transcript_region:SL2.40ch10:2487795..2489641- functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00038726g0008.1 protein AED:0.30 eAED:0.32 QI:0|1|0.66|1|0.8|0.83|6|0|282; (*GB) gi|359495876|ref|XP_002266924.2| (e_value=7e-112) PREDICTED: uncharacterized protein LOC100256605 [Vitis vinifera];; (*SWP) sp|Q55141|ILVH_SYNY3 (e_value=7e-59) Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2;; (*TAIR) AT5G16290.2 (e_value=1e-104) | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333874-5337387 FORWARD LENGTH=477;; (*ITAG) Solyc11g008780.1.1 (e_value=3e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2962862-2970192 transcript_region:SL2.40ch11:2962862..2970192+ go_terms:GO:0009082,GO:0008152 functional_description:"Acetolactate synthase small subunit (AHRD V1 ***- Q9SMC2_NICPL); contains Interpro domain(s) IPR004789 Acetolactate synthase, small subunit "; GO:0009082,GO:0008152 NbS00006944g0005.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|356562763|ref|XP_003549638.1| (e_value=7e-49) PREDICTED: uncharacterized protein LOC100792613 [Glycine max];; (*TAIR) AT4G03965.1 (e_value=1e-42) | Symbols: | RING/U-box superfamily protein | chr4:1889576-1890205 FORWARD LENGTH=209;; (*ITAG) Solyc02g081180.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39818420-39819031 transcript_region:SL2.40ch02:39818420..39819031+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *--- D7MVE2_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00006944g0022.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.7|1|0.88|0.9|10|0|601; (*GB) gi|345843150|gb|AEO18231.1| (e_value=0.0) Lyk11 [Nicotiana benthamiana];; (*SWP) sp|Q9SGY7|PEK11_ARATH (e_value=2e-61) Putative proline-rich receptor-like protein kinase PERK11 OS=Arabidopsis thaliana GN=PERK11 PE=2 SV=2;; (*TAIR) AT3G21630.1 (e_value=3e-136) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc02g081040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39681851-39685792 transcript_region:SL2.40ch02:39681851..39685792- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00006944g0021.1 protein AED:0.37 eAED:0.38 QI:362|0.66|0.75|1|0.33|0.25|4|0|105 NbS00006944g0020.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|321; (*GB) gi|22261807|sp|P80471.2|LIPC_SOLTU (e_value=1e-154) RecName: Full=Light-induced protein, chloroplastic; AltName: Full=Drought-induced stress protein CDSP-34; Flags: Precursor;; (*SWP) sp|P80471|LIPC_SOLTU (e_value=4e-156) Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT4G22240.1 (e_value=4e-103) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr4:11766090-11767227 REVERSE LENGTH=310;; (*ITAG) Solyc02g081170.2.1 (e_value=1e-153) genomic_reference:SL2.40ch02 gene_region:39810752-39812645 transcript_region:SL2.40ch02:39810752..39812645- go_terms:GO:0005515 functional_description:"Plastid-lipid-associated protein, chloroplastic (AHRD V1 **-- PAP_CITUN); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0005515 NbS00006944g0007.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|370; (*GB) gi|225468885|ref|XP_002270044.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100251709 [Vitis vinifera];; (*TAIR) AT4G22190.1 (e_value=6e-51) | Symbols: | unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). | chr4:11742102-11743265 REVERSE LENGTH=387;; (*ITAG) Solyc02g081150.1.1 (e_value=5e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39789696-39790745 transcript_region:SL2.40ch02:39789696..39790745- functional_description:"Unknown Protein (AHRD V1)"; NbS00006944g0023.1 protein AED:0.28 eAED:0.28 QI:109|0.84|0.71|1|0.84|0.92|14|0|508; (*GB) gi|2507174|sp|P21343.2|PFPB_SOLTU (e_value=0.0) RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase;; (*SWP) sp|P21343|PFPB_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT4G04040.1 (e_value=0.0) | Symbols: MEE51 | Phosphofructokinase family protein | chr4:1939250-1942765 FORWARD LENGTH=569;; (*ITAG) Solyc02g081160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39802521-39809198 transcript_region:SL2.40ch02:39802521..39809198- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D1JTA2_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00030733g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|224086998|ref|XP_002308026.1| (e_value=8e-118) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57400.1 (e_value=2e-94) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21238547-21239971 FORWARD LENGTH=474;; (*ITAG) Solyc10g079390.1.1 (e_value=1e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60259172-60260260 transcript_region:SL2.40ch10:60259172..60260260+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030733g0006.1 protein AED:0.23 eAED:0.23 QI:944|0.86|0.86|1|0.90|0.86|23|559|799; (*GB) gi|225441852|ref|XP_002284163.1| (e_value=0.0) PREDICTED: villin-2-like [Vitis vinifera];; (*SWP) sp|O81645|VILI3_ARATH (e_value=0.0) Villin-3 OS=Arabidopsis thaliana GN=VLN3 PE=1 SV=2;; (*TAIR) AT3G57410.1 (e_value=0.0) | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243615-21249809 REVERSE LENGTH=965;; (*ITAG) Solyc04g015830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6174875-6186468 transcript_region:SL2.40ch04:6174875..6186468+ go_terms:GO:0051015 functional_description:"Actin-binding protein gelsolin (AHRD V1 **-* D8UJD7_VOLCA); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0051015 NbS00012691g0004.1 protein AED:0.13 eAED:0.13 QI:69|0.33|0|1|0.66|0.5|4|0|314; (*GB) gi|255579771|ref|XP_002530724.1| (e_value=8e-135) Peroxidase 53 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LEH3|PER15_IPOBA (e_value=7e-134) Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1;; (*TAIR) AT5G06720.1 (e_value=5e-126) | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335;; (*ITAG) Solyc11g072920.1.1 (e_value=3e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53161025-53162350 transcript_region:SL2.40ch11:53161025..53162350- go_terms:GO:0055114 functional_description:"Peroxidase 5 (AHRD V1 ***- Q9XFL6_PHAVU); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00056878g0007.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0.5|0.33|3|0|364; (*GB) gi|226027|prf||1407140B (e_value=0.0) acetolactate synthase SuRB;; (*SWP) sp|P09114|ILVB2_TOBAC (e_value=0.0) Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1;; (*TAIR) AT3G48560.1 (e_value=4e-141) | Symbols: CSR1, ALS, AHAS, TZP5, IMR1 | chlorsulfuron/imidazolinone resistant 1 | chr3:18001530-18003542 REVERSE LENGTH=670;; (*ITAG) Solyc03g044330.1.1 (e_value=1e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:12823169-12825148 transcript_region:SL2.40ch03:12823169..12825148- go_terms:GO:0003984 functional_description:"Acetolactate synthase (AHRD V1 **** D7RPJ7_SOLTU); contains Interpro domain(s) IPR012846 Acetolactate synthase, large subunit, biosynthetic "; GO:0003984 NbS00056878g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|338; (*GB) gi|124367|sp|P09342.1|ILVB1_TOBAC (e_value=0.0) RecName: Full=Acetolactate synthase 1, chloroplastic; AltName: Full=ALS I; AltName: Full=Acetohydroxy-acid synthase I; AltName: Full=Acetolactate synthase I; Flags: Precursor;; (*SWP) sp|P09342|ILVB1_TOBAC (e_value=0.0) Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1;; (*TAIR) AT3G48560.1 (e_value=0.0) | Symbols: CSR1, ALS, AHAS, TZP5, IMR1 | chlorsulfuron/imidazolinone resistant 1 | chr3:18001530-18003542 REVERSE LENGTH=670;; (*ITAG) Solyc03g044330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:12823169-12825148 transcript_region:SL2.40ch03:12823169..12825148- go_terms:GO:0003984 functional_description:"Acetolactate synthase (AHRD V1 **** D7RPJ7_SOLTU); contains Interpro domain(s) IPR012846 Acetolactate synthase, large subunit, biosynthetic "; GO:0003984 NbS00001322g0010.1 protein AED:0.43 eAED:0.54 QI:0|0|0|0.85|0|0.14|7|0|315; (*GB) gi|57013987|ref|YP_173459.1| (e_value=1e-139) ATP synthase F1 subunit 1 [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=4e-141) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=2e-134) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00001322g0003.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.14|1|1|7|0|109 NbS00001322g0009.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0|5|0|421; (*GB) gi|57013984|ref|YP_173456.1| (e_value=2e-98) cytochrome oxidase subunit 3 [Nicotiana tabacum];; (*SWP) sp|P32808|COX3_HELAN (e_value=3e-94) Cytochrome c oxidase subunit 3 OS=Helianthus annuus GN=COX3 PE=3 SV=1;; (*ITAG) ATMG00730.1 (e_value=9e-85) | Symbols: COX3 | cytochrome c oxidase subunit 3 | chrM:218280-219077 FORWARD LENGTH=265;; (*ITAG) Solyc00g019730.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11782543-11782983 transcript_region:SL2.40ch00:11782543..11782983- go_terms:GO:0016020 functional_description:"Cytochrome c oxidase subunit 3 (AHRD V1 ***- Q5M9V7_TOBAC); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III "; GO:0016020 NbS00001322g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|3|0|285; (*GB) gi|57013997|ref|YP_173468.1| (e_value=3e-95) hypothetical protein NitaMp131 [Nicotiana tabacum];; (*ITAG) Solyc00g112190.2.1 (e_value=4e-73) genomic_reference:SL2.40ch00 gene_region:16182668-16183977 transcript_region:SL2.40ch00:16182668..16183977- functional_description:"Unknown Protein (AHRD V1)"; NbS00053137g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|1|1|3|0|455; (*GB) gi|76573333|gb|ABA46771.1| (e_value=8e-180) unknown [Solanum tuberosum];; (*SWP) sp|Q9M354|AGD6_ARATH (e_value=1e-143) Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1;; (*TAIR) AT3G53710.2 (e_value=9e-145) | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-19905419 REVERSE LENGTH=459;; (*ITAG) Solyc10g084690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63448012-63451193 transcript_region:SL2.40ch10:63448012..63451193+ go_terms:GO:0032312 functional_description:"ADP-ribosylation factor GTPase activating protein 1 (AHRD V1 *--- Q0V8A7_BOVIN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbS00016860g0006.1 protein AED:0.28 eAED:0.29 QI:0|0|0|0.5|1|1|4|0|181; (*GB) gi|388503232|gb|AFK39682.1| (e_value=6e-51) unknown [Lotus japonicus];; (*TAIR) AT3G16190.1 (e_value=3e-49) | Symbols: | Isochorismatase family protein | chr3:5489883-5491195 REVERSE LENGTH=196;; (*ITAG) Solyc03g120540.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:62962251-62964678 transcript_region:SL2.40ch03:62962251..62964678+ go_terms:GO:0008936 functional_description:"Isochorismatase hydrolase-like (AHRD V1 ***- Q6K7V7_ORYSJ); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00030729g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|222822695|gb|ACM68460.1| (e_value=2e-56) stress-associated protein 10 [Solanum pennellii];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=9e-40) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=7e-41) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00030729g0005.1 protein AED:0.32 eAED:0.41 QI:0|0|0|0.5|0|0|2|0|68 NbS00026734g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.33|1|1|1|3|17|281; (*GB) gi|255588257|ref|XP_002534549.1| (e_value=5e-145) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12090.1 (e_value=6e-112) | Symbols: TET6 | tetraspanin6 | chr3:3852326-3853714 REVERSE LENGTH=282;; (*ITAG) Solyc04g049080.2.1 (e_value=3e-110) genomic_reference:SL2.40ch04 gene_region:38662724-38666499 transcript_region:SL2.40ch04:38662724..38666499+ go_terms:GO:0016021 functional_description:"Senescence-associated protein-like (AHRD V1 ***- Q9LH57_ARATH); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbC26053601g0004.1 protein AED:0.16 eAED:0.16 QI:77|1|0.66|1|0.8|0.83|6|0|128; (*GB) gi|134616|sp|P27082.2|SODC_NICPL (e_value=2e-86) RecName: Full=Superoxide dismutase [Cu-Zn];; (*SWP) sp|P27082|SODC_NICPL (e_value=7e-88) Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2;; (*TAIR) AT1G08830.2 (e_value=3e-74) | Symbols: CSD1 | copper/zinc superoxide dismutase 1 | chr1:2827700-2829053 FORWARD LENGTH=152;; (*ITAG) Solyc01g067740.2.1 (e_value=1e-86) genomic_reference:SL2.40ch01 gene_region:69074003-69078931 transcript_region:SL2.40ch01:69074003..69078931+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** B1Q475_CAPCH); contains Interpro domain(s) IPR001424 Superoxide dismutase, copper/zinc binding "; GO:0004784 NbS00034965g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.9|1|1|1|10|171|410; (*GB) gi|78191456|gb|ABB29949.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q54KZ8|EIF3M_DICDI (e_value=2e-65) Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1;; (*TAIR) AT5G15610.2 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr5:5079579-5081929 FORWARD LENGTH=413;; (*ITAG) Solyc02g089070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45554788-45559960 transcript_region:SL2.40ch02:45554788..45559960+ functional_description:"Eukaryotic translation initiation factor 3 subunit M (AHRD V1 ***- B2WFL9_PYRTR); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbS00046937g0013.1 protein AED:0.18 eAED:0.18 QI:186|0.5|0|1|0.5|0.4|5|0|473; (*GB) gi|53749487|gb|AAU90340.1| (e_value=0.0) hypothetical protein SDM1_56t00017 [Solanum demissum];; (*TAIR) AT1G73240.1 (e_value=6e-109) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27542397-27544668 REVERSE LENGTH=519;; (*ITAG) Solyc03g098340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54128463-54131985 transcript_region:SL2.40ch03:54128463..54131985+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046937g0009.1 protein AED:0.19 eAED:0.22 QI:120|0.83|0.85|1|0.66|0.85|7|439|451; (*GB) gi|113205424|gb|AAU90341.2| (e_value=0.0) hypothetical protein SDM1_56t00018 [Solanum demissum];; (*TAIR) AT4G24900.1 (e_value=8e-97) | Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421;; (*ITAG) Solyc03g098330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54121751-54127481 transcript_region:SL2.40ch03:54121751..54127481+ functional_description:"LOC100036982 protein (Fragment) (AHRD V1 ***- A1L2X7_XENLA)"; NbS00046937g0011.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0.25|0.11|9|0|881; (*GB) gi|53749484|gb|AAU90337.1| (e_value=0.0) Putative receptor kinase-like protein, identical [Solanum demissum];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=1e-167) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=1e-168) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54171941-54175132 transcript_region:SL2.40ch03:54171941..54175132+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00010911g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0|2|0|195; (*GB) gi|365222912|gb|AEW69808.1| (e_value=1e-52) Hop-interacting protein THI101 [Solanum lycopersicum];; (*ITAG) Solyc05g053960.2.1 (e_value=4e-91) genomic_reference:SL2.40ch05 gene_region:63115904-63122815 transcript_region:SL2.40ch05:63115904..63122815- functional_description:"Cysteine-rich extensin-like protein-2 (AHRD V1 *-*- Q08195_TOBAC)"; NbS00010911g0001.1 protein AED:0.35 eAED:0.35 QI:321|0.75|1|1|1|1|5|202|169; (*GB) gi|118490011|gb|ABK96799.1| (e_value=3e-109) ras-related GTP binding protein [Solanum tuberosum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=3e-99) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=2e-100) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc05g053940.2.1 (e_value=6e-112) genomic_reference:SL2.40ch05 gene_region:63104823-63109660 transcript_region:SL2.40ch05:63104823..63109660- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbC25693309g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|225433263|ref|XP_002282114.1| (e_value=7e-23) PREDICTED: uncharacterized protein LOC100249317 [Vitis vinifera];; (*TAIR) AT4G13330.1 (e_value=5e-15) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:7754248-7755837 REVERSE LENGTH=428;; (*ITAG) Solyc09g090690.2.1 (e_value=1e-34) genomic_reference:SL2.40ch09 gene_region:65487436-65490341 transcript_region:SL2.40ch09:65487436..65490341- functional_description:"Unknown Protein (AHRD V1)"; NbS00011783g0023.1 protein AED:0.48 eAED:0.49 QI:0|0|0|0.75|0|0.25|4|0|288; (*GB) gi|57013965|ref|YP_173437.1| (e_value=4e-57) hypothetical protein NitaMp099 [Nicotiana tabacum]; NbS00011783g0021.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.25|1|1|4|0|171 NbS00011783g0022.1 protein AED:0.46 eAED:0.69 QI:0|0|0|1|0.5|0.66|3|0|70 NbS00011783g0005.1 protein AED:0.17 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|57013962|ref|YP_173434.1| (e_value=2e-73) hypothetical protein NitaMp095 [Nicotiana tabacum];; (*ITAG) Solyc08g036500.1.1 (e_value=7e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:25575333-25575776 transcript_region:SL2.40ch08:25575333..25575776- functional_description:"Uncharacterized mitochondrial protein AtMg00660 (AHRD V1 **-- M660_ARATH)"; NbS00011783g0026.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|388495774|gb|AFK35953.1| (e_value=4e-34) unknown [Lotus japonicus];; (*ITAG) Solyc00g094520.1.1 (e_value=3e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:15539102-15539287 transcript_region:SL2.40ch00:15539102..15539287- functional_description:"Unknown Protein (AHRD V1)"; NbS00011783g0025.1 protein AED:0.46 eAED:0.76 QI:0|0|0|1|0|0|3|0|101; (*GB) gi|57013966|ref|YP_173438.1| (e_value=9e-21) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00011783g0027.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|80; (*GB) gi|57013969|ref|YP_173441.1| (e_value=7e-44) hypothetical protein NitaMp103 [Nicotiana tabacum]; NbS00011783g0024.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|77; (*GB) gi|57013968|ref|YP_173440.1| (e_value=1e-41) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00030345g0010.1 protein AED:0.26 eAED:0.26 QI:158|1|1|1|0.6|0.72|11|405|474; (*GB) gi|356530543|ref|XP_003533840.1| (e_value=0.0) PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max];; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=0.0) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1;; (*TAIR) AT1G72280.1 (e_value=0.0) | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469;; (*ITAG) Solyc07g056390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 "; GO:0015035 NbS00030345g0007.1 protein AED:0.21 eAED:0.23 QI:0|1|0.83|1|1|1|12|0|1039; (*GB) gi|147810715|emb|CAN76368.1| (e_value=0.0) hypothetical protein VITISV_024584 [Vitis vinifera];; (*SWP) sp|P57997|IF2C_PHAVU (e_value=0.0) Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris GN=IF2CP PE=2 SV=1;; (*TAIR) AT1G17220.1 (e_value=0.0) | Symbols: FUG1 | Translation initiation factor 2, small GTP-binding protein | chr1:5885383-5890165 FORWARD LENGTH=1026;; (*ITAG) Solyc07g056020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61239469-61248089 transcript_region:SL2.40ch07:61239469..61248089- go_terms:GO:0003743 functional_description:"Translation initiation factor IF-2 (AHRD V1 **** A5B2X2_VITVI); contains Interpro domain(s) IPR000178 Initiation factor 2 "; GO:0003743 NbC25993082g0001.1 protein AED:0.59 eAED:0.93 QI:87|0|0|0.75|0|0|4|0|81 NbS00006697g0007.1 protein AED:0.36 eAED:0.36 QI:315|1|0.8|1|0.75|0.6|5|0|140; (*GB) gi|296090219|emb|CBI40038.3| (e_value=4e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54KX3|VP13F_DICDI (e_value=9e-14) Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1;; (*TAIR) AT5G24740.1 (e_value=1e-37) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045140.1.1 (e_value=1e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:36810584-36817804 transcript_region:SL2.40ch11:36810584..36817804+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 *-*- D3BE65_POLPA)"; NbC25985183g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0.83|1|0.6|0.83|6|0|285; (*GB) gi|225435460|ref|XP_002282827.1| (e_value=2e-174) PREDICTED: tRNA-specific 2-thiouridylase mnmA-like [Vitis vinifera];; (*SWP) sp|O51625|MNMA_BORBU (e_value=7e-78) tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3 SV=1;; (*TAIR) AT1G51310.1 (e_value=5e-163) | Symbols: | transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases | chr1:19019185-19021735 REVERSE LENGTH=497;; (*ITAG) Solyc09g074100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61272519-61280465 transcript_region:SL2.40ch09:61272519..61280465- go_terms:GO:0004808 functional_description:"tRNA-specific 2-thiouridylase mnmA (AHRD V1 **** A6DKA8_9BACT); contains Interpro domain(s) IPR018318 tRNA methyl transferase-like "; GO:0004808 NbS00009386g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|111073731|dbj|BAF02554.1| (e_value=4e-65) hypothetical protein [Nicotiana benthamiana]; NbS00009386g0007.1 protein AED:0.33 eAED:0.33 QI:0|1|0.91|1|0.90|0.91|12|1295|452; (*GB) gi|255578656|ref|XP_002530189.1| (e_value=0.0) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|P82869|CYP37_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3;; (*TAIR) AT3G15520.1 (e_value=0.0) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:5249739-5252432 REVERSE LENGTH=466;; (*ITAG) Solyc12g013580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4417408-4423280 transcript_region:SL2.40ch12:4417408..4423280+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 ***- A8INE5_CHLRE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00007540g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0|0.75|0.33|0.25|4|0|981; (*GB) gi|225460781|ref|XP_002276411.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246876 [Vitis vinifera];; (*SWP) sp|Q7RTR2|NLRC3_HUMAN (e_value=2e-11) Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2;; (*TAIR) AT5G55540.1 (e_value=0.0) | Symbols: TRN1, LOP1 | tornado 1 | chr5:22496322-22500543 REVERSE LENGTH=1380;; (*ITAG) Solyc03g112750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57140851-57146237 transcript_region:SL2.40ch03:57140851..57146237+ functional_description:"Leucine rich repeat containing proteins-like protein (AHRD V1 *--- B3G460_ADIVA); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; NbS00007540g0020.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|0|0.33|3|0|195; (*GB) gi|255549722|ref|XP_002515912.1| (e_value=9e-68) RNA polymerase II mediator complex subunit, putative [Ricinus communis];; (*SWP) sp|Q54PN3|MED6_DICDI (e_value=5e-20) Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1;; (*TAIR) AT3G21350.1 (e_value=4e-58) | Symbols: MED6 | RNA polymerase transcriptional regulation mediator-related | chr3:7517106-7518587 FORWARD LENGTH=257;; (*ITAG) Solyc12g044640.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45137898-45142570 transcript_region:SL2.40ch12:45137898..45142570- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 6 (AHRD V1 *-*- C1C411_RANCA); contains Interpro domain(s) IPR016820 Mediator complex, subunit Med6, metazoa/plant "; GO:0016592 NbS00007540g0021.1 protein AED:0.26 eAED:0.26 QI:12|1|0.5|1|1|1|2|389|79 NbS00007540g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|297831494|ref|XP_002883629.1| (e_value=3e-125) hypothetical protein ARALYDRAFT_480071 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G04220.1 (e_value=8e-126) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc12g044670.1.1 (e_value=2e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45286157-45287083 transcript_region:SL2.40ch12:45286157..45287083- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS21_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00007540g0017.1 protein AED:0.19 eAED:0.19 QI:179|1|0.75|1|0.33|0.5|4|0|143; (*GB) gi|76573317|gb|ABA46763.1| (e_value=5e-89) unknown [Solanum tuberosum];; (*SWP) sp|O82204|RL281_ARATH (e_value=3e-76) 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1;; (*TAIR) AT2G19730.3 (e_value=2e-77) | Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143;; (*ITAG) Solyc03g121330.2.1 (e_value=2e-91) genomic_reference:SL2.40ch03 gene_region:63514413-63516687 transcript_region:SL2.40ch03:63514413..63516687+ go_terms:GO:0005515 functional_description:"60S ribosomal protein L28 (AHRD V1 ***- B3TLS3_ELAGV); contains Interpro domain(s) IPR002672 Ribosomal protein L28e "; GO:0005515 NbS00018489g0018.1 protein AED:0.04 eAED:0.04 QI:663|1|1|1|0.5|0.6|5|325|171; (*GB) gi|224123012|ref|XP_002318972.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9W9|P2C34_ARATH (e_value=3e-61) Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1;; (*TAIR) AT3G05640.2 (e_value=2e-62) | Symbols: | Protein phosphatase 2C family protein | chr3:1640610-1642227 REVERSE LENGTH=358;; (*ITAG) Solyc01g065700.2.1 (e_value=7e-88) genomic_reference:SL2.40ch01 gene_region:64680932-64684810 transcript_region:SL2.40ch01:64680932..64684810- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00018489g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.72|0.90|1|1|11|753|626; (*GB) gi|225431806|ref|XP_002272864.1| (e_value=0.0) PREDICTED: phospholipase D p1-like [Vitis vinifera];; (*SWP) sp|Q9LRZ5|PLDP1_ARATH (e_value=0.0) Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1;; (*TAIR) AT3G16785.1 (e_value=0.0) | Symbols: PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 | phospholipase D P1 | chr3:5711329-5718696 FORWARD LENGTH=1096;; (*ITAG) Solyc01g065720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64704413-64723926 transcript_region:SL2.40ch01:64704413..64723926- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00018489g0020.1 protein AED:0.29 eAED:0.29 QI:87|1|1|1|0.66|0.5|4|274|115; (*GB) gi|225450753|ref|XP_002283567.1| (e_value=3e-51) PREDICTED: uncharacterized protein LOC100256314 isoform 1 [Vitis vinifera];; (*TAIR) AT1G56260.1 (e_value=8e-40) | Symbols: | unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21064647-21065577 REVERSE LENGTH=127;; (*ITAG) Solyc01g065710.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:64687653-64690458 transcript_region:SL2.40ch01:64687653..64690458- functional_description:"Unknown Protein (AHRD V1)"; NbS00018489g0017.1 protein AED:0.29 eAED:0.30 QI:0|0.33|0|1|0.33|0.5|4|0|342; (*GB) gi|359477161|ref|XP_002273693.2| (e_value=5e-30) PREDICTED: uncharacterized protein LOC100263762 [Vitis vinifera];; (*ITAG) Solyc01g065690.2.1 (e_value=6e-151) genomic_reference:SL2.40ch01 gene_region:64673422-64675017 transcript_region:SL2.40ch01:64673422..64675017- go_terms:GO:0030001 functional_description:"Heavy-metal associated domain protein (AHRD V1 *--- C3SA91_BRADI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00015043g0008.1 protein AED:0.26 eAED:0.26 QI:229|1|0.85|1|0.16|0.71|7|469|334; (*GB) gi|350535985|ref|NP_001233968.1| (e_value=0.0) ASC1-like protein [Solanum lycopersicum];; (*SWP) sp|Q8W4Y5|ASCL_SOLLC (e_value=0.0) ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G13580.3 (e_value=2e-157) | Symbols: LAG13 | LAG1 longevity assurance homolog 3 | chr1:4645006-4646765 REVERSE LENGTH=308;; (*ITAG) Solyc05g010280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4442298-4449047 transcript_region:SL2.40ch05:4442298..4449047+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 6 (AHRD V1 **-- C1C120_9MAXI); contains Interpro domain(s) IPR016439 Longevity assurance, LAG1/LAC1 "; GO:0050291 NbS00015043g0003.1 protein AED:0.66 eAED:0.76 QI:0|0|0|0.6|1|1|5|0|149; (*GB) gi|224118096|ref|XP_002331557.1| (e_value=3e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|B6IRQ7|RL4_RHOCS (e_value=1e-17) 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplD PE=3 SV=1;; (*TAIR) AT2G20060.1 (e_value=4e-35) | Symbols: | Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300;; (*ITAG) Solyc12g088730.1.1 (e_value=8e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62423490-62429208 transcript_region:SL2.40ch12:62423490..62429208+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- Q8LE97_ARATH); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0003735,GO:0005515 NbS00015043g0010.1 protein AED:0.62 eAED:0.66 QI:0|0|0|0.66|0|0.33|3|0|109 NbS00015043g0009.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|4|0|147; (*GB) gi|90111009|sp|Q3C1G9.1|RPOC2_NICSY (e_value=6e-58) RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; (*SWP) sp|P38550|RPOC2_TOBAC (e_value=2e-59) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2;; (*ITAG) ATCG00170.1 (e_value=1e-56) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc03g095380.1.1 (e_value=5e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49935395-49936986 transcript_region:SL2.40ch03:49935395..49936986+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WBD0_9BORA); contains Interpro domain(s) IPR007081 RNA polymerase Rpb1, domain 5 "; GO:0006350 NbS00001348g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.5|0.33|3|0|520; (*GB) gi|225431601|ref|XP_002276933.1| (e_value=4e-131) PREDICTED: trihelix transcription factor GT-2 [Vitis vinifera];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=7e-60) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76880.1 (e_value=2e-69) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:28865594-28867931 FORWARD LENGTH=603;; (*ITAG) Solyc11g005380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:304294-305925 transcript_region:SL2.40ch11:304294..305925+ go_terms:GO:0003677 functional_description:"GT-2 factor (Fragment) (AHRD V1 *--- Q8W240_SOYBN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbC26054463g0002.1 protein AED:0.03 eAED:0.13 QI:0|0|0.33|1|0|0.33|3|0|321; (*GB) gi|297742866|emb|CBI35631.3| (e_value=6e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=4e-29) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G10280.1 (e_value=1e-48) | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain protein 92 | chr5:3232776-3233956 FORWARD LENGTH=334;; (*ITAG) Solyc05g051550.1.1 (e_value=5e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61076188-61078333 transcript_region:SL2.40ch05:61076188..61078333+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00031838g0010.1 protein AED:0.00 eAED:0.05 QI:256|1|0.5|1|1|0.5|2|0|383; (*GB) gi|350539725|ref|NP_001234767.1| (e_value=0.0) putative GID1-like gibberellin receptor [Solanum lycopersicum];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00031838g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|113205399|gb|AAU90302.2| (e_value=4e-18) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=4e-25) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC26155340g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0.6|1|0.75|0.4|5|0|717; (*GB) gi|359478641|ref|XP_003632149.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera];; (*SWP) sp|Q8GUH1|PUB33_ARATH (e_value=2e-128) U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2;; (*TAIR) AT2G45910.1 (e_value=1e-129) | Symbols: | U-box domain-containing protein kinase family protein | chr2:18894520-18898212 FORWARD LENGTH=834;; (*ITAG) Solyc11g065950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48645711-48656003 transcript_region:SL2.40ch11:48645711..48656003- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00029482g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=0.0) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=2e-148) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00029482g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|224152016|ref|XP_002337181.1| (e_value=1e-151) predicted protein [Populus trichocarpa];; (*TAIR) AT4G08950.1 (e_value=2e-137) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=8e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00001465g0015.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.83|0.4|0.5|6|0|396; (*GB) gi|224078614|ref|XP_002305575.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g031660.1.1 (e_value=8e-156) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:8390034-8394716 transcript_region:SL2.40ch03:8390034..8394716- functional_description:"Unknown Protein (AHRD V1)"; NbS00001465g0003.1 protein AED:0.00 eAED:0.00 QI:297|1|1|1|1|0.83|6|2113|713; (*GB) gi|255542460|ref|XP_002512293.1| (e_value=8e-71) Protein FRIGIDA, putative [Ricinus communis];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-12) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=3e-39) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc01g098240.1.1 (e_value=4e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80581581-80588427 transcript_region:SL2.40ch01:80581581..80588427+ functional_description:"RNA polymerase Rpb1 C-terminal repeat domain-containing protein (AHRD V1 *--- C5GU31_AJEDR); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00001465g0018.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|186; (*GB) gi|351653928|ref|YP_004891651.1| (e_value=3e-84) ycf2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=2e-85) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-76) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=7e-84) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00001465g0014.1 protein AED:0.69 eAED:0.78 QI:0|0|0|0.66|0|0|3|0|116 NbS00001465g0016.1 protein AED:0.39 eAED:0.73 QI:0|0|0|0.66|0|0|3|0|92 NbS00014507g0009.1 protein AED:0.21 eAED:0.21 QI:139|1|1|1|0.75|1|5|216|193; (*GB) gi|37783267|gb|AAP42502.1| (e_value=7e-122) peroxiredoxin [Ipomoea batatas];; (*SWP) sp|Q9M7T0|PRX2F_ARATH (e_value=1e-103) Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2;; (*TAIR) AT3G06050.1 (e_value=8e-105) | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | chr3:1826311-1827809 REVERSE LENGTH=201;; (*ITAG) Solyc01g079820.2.1 (e_value=8e-129) genomic_reference:SL2.40ch01 gene_region:71459091-71462906 transcript_region:SL2.40ch01:71459091..71462906- go_terms:GO:0016491,GO:0045454 functional_description:"Redoxin domain protein (AHRD V1 **-- A1WHD5_VEREI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00014507g0008.1 protein AED:0.12 eAED:0.19 QI:319|0.87|0.77|1|0.25|0.33|9|647|432; (*GB) gi|225432562|ref|XP_002281045.1| (e_value=1e-84) PREDICTED: E3 ubiquitin-protein ligase RHF1A [Vitis vinifera];; (*SWP) sp|Q4TU14|RHF1A_ARATH (e_value=8e-53) E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1;; (*TAIR) AT4G14220.1 (e_value=6e-54) | Symbols: RHF1A | RING-H2 group F1A | chr4:8196012-8198240 FORWARD LENGTH=371;; (*ITAG) Solyc01g079810.2.1 (e_value=2e-159) genomic_reference:SL2.40ch01 gene_region:71451798-71457617 transcript_region:SL2.40ch01:71451798..71457617+ functional_description:"RING-H2 finger protein (Fragment) (AHRD V1 *-*- Q7X9M1_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; NbS00002462g0019.1 protein AED:0.02 eAED:0.06 QI:0|0.5|0.2|0.8|1|0.8|5|0|1222; (*GB) gi|359481940|ref|XP_002264975.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248757 [Vitis vinifera];; (*ITAG) Solyc09g008530.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:2020056-2027165 transcript_region:SL2.40ch09:2020056..2027165- functional_description:"RRP1 (AHRD V1 *--- B3RH41_MEDTR); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00002462g0021.1 protein AED:0.10 eAED:0.14 QI:0|0.5|0.2|1|0.5|0.2|5|0|363; (*GB) gi|356570790|ref|XP_003553567.1| (e_value=1e-144) PREDICTED: probable pectinesterase 15-like [Glycine max];; (*SWP) sp|Q9ZQA3|PME15_ARATH (e_value=4e-118) Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1;; (*TAIR) AT2G36710.1 (e_value=3e-119) | Symbols: | Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407;; (*ITAG) Solyc07g043240.2.1 (e_value=4e-103) genomic_reference:SL2.40ch07 gene_region:54205379-54208245 transcript_region:SL2.40ch07:54205379..54208245- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S4Z6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00002462g0022.1 protein AED:0.19 eAED:0.19 QI:0|0.95|0.90|1|0.57|0.68|22|188|932; (*GB) gi|224140243|ref|XP_002323493.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=8e-15) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1;; (*TAIR) AT2G36720.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15393447-15399189 FORWARD LENGTH=1007;; (*ITAG) Solyc09g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2003633-2012302 transcript_region:SL2.40ch09:2003633..2012302- go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--* B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00002462g0020.1 protein AED:0.03 eAED:0.08 QI:0|0|0|1|0|0|2|0|623; (*GB) gi|255556792|ref|XP_002519429.1| (e_value=0.0) Uracil permease, putative [Ricinus communis];; (*SWP) sp|P94575|ALLP_BACSU (e_value=2e-62) Probable allantoin permease OS=Bacillus subtilis (strain 168) GN=pucI PE=2 SV=1;; (*TAIR) AT5G03555.1 (e_value=0.0) | Symbols: | permease, cytosine/purines, uracil, thiamine, allantoin family protein | chr5:898354-900153 REVERSE LENGTH=599;; (*ITAG) Solyc09g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2036208-2039695 transcript_region:SL2.40ch09:2036208..2039695+ go_terms:GO:0016020 functional_description:"NCS1 family transporter cytosine/purines/uracil/thiamine/allantoin (AHRD V1 *--- A4RZF3_OSTLU); contains Interpro domain(s) IPR001248 Permease, cytosine/purines, uracil, thiamine, allantoin "; GO:0016020 NbS00009627g0007.1 protein AED:0.17 eAED:0.17 QI:357|0.83|1|1|0.83|0.85|7|363|243; (*GB) gi|224105811|ref|XP_002313939.1| (e_value=5e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=2e-98) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT3G49720.2 (e_value=1e-99) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440192-18441655 REVERSE LENGTH=261;; (*ITAG) Solyc02g092000.2.1 (e_value=1e-152) genomic_reference:SL2.40ch02 gene_region:47797963-47802883 transcript_region:SL2.40ch02:47797963..47802883- functional_description:"Unknown Protein (AHRD V1)"; NbS00009627g0008.1 protein AED:0.15 eAED:0.17 QI:0|0.7|0.72|1|1|1|11|0|422; (*GB) gi|359497260|ref|XP_002263978.2| (e_value=4e-102) PREDICTED: GTP-binding protein At3g49725, chloroplastic-like, partial [Vitis vinifera];; (*SWP) sp|Q0WTB4|Y3725_ARATH (e_value=3e-69) GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g49725 PE=2 SV=2;; (*TAIR) AT3G49725.1 (e_value=2e-70) | Symbols: | GTP-binding protein, HflX | chr3:18442448-18445397 REVERSE LENGTH=620;; (*ITAG) Solyc02g092010.2.1 (e_value=1e-178) genomic_reference:SL2.40ch02 gene_region:47803447-47810512 transcript_region:SL2.40ch02:47803447..47810512- go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein hflX (AHRD V1 *-*- B8GW93_CAUCN); contains Interpro domain(s) IPR016496 GTP-binding protein, HflX "; GO:0005525,GO:0005622 NbS00009627g0006.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.25|1|1|4|0|111; (*GB) gi|356546722|ref|XP_003541772.1| (e_value=9e-15) PREDICTED: LOW QUALITY PROTEIN: DUF21 domain-containing protein At4g33700-like [Glycine max];; (*ITAG) Solyc02g092030.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47817379-47820707 transcript_region:SL2.40ch02:47817379..47820707+ go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00014605g0003.1 protein AED:0.26 eAED:0.31 QI:248|1|0.5|1|1|1|2|59|92; (*ITAG) Solyc10g049530.1.1 (e_value=5e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00004157g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=7e-50) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=1e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=3e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00006549g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.57|0.85|0.83|0.71|7|369|165; (*GB) gi|48209968|gb|AAT40531.1| (e_value=5e-71) ATP synthase D chain, mitochondrial, putative [Solanum demissum];; (*SWP) sp|Q9FT52|ATP5H_ARATH (e_value=4e-63) ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3;; (*TAIR) AT3G52300.1 (e_value=3e-64) | Symbols: ATPQ | ATP synthase D chain, mitochondrial | chr3:19396689-19398119 FORWARD LENGTH=168;; (*ITAG) Solyc11g072450.1.1 (e_value=4e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52705683-52710449 transcript_region:SL2.40ch11:52705683..52710449- go_terms:GO:0000276 functional_description:"Mitochondrial F0 ATP synthase D chain (AHRD V1 ***- B3TLP5_ELAGV); contains Interpro domain(s) IPR008689 ATPase, F0 complex, subunit D, mitochondrial "; GO:0000276 NbS00015488g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|216; (*GB) gi|255568357|ref|XP_002525153.1| (e_value=2e-142) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=1e-140) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-141) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc03g006270.2.1 (e_value=2e-159) genomic_reference:SL2.40ch03 gene_region:888904-890977 transcript_region:SL2.40ch03:888904..890977+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00015488g0012.1 protein AED:0.10 eAED:0.10 QI:86|0.7|0.63|0.90|0.5|0.63|11|0|656; (*GB) gi|297740449|emb|CBI30631.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G28530.2 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10032127-10035496 REVERSE LENGTH=613;; (*ITAG) Solyc03g006280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:891604-897217 transcript_region:SL2.40ch03:891604..897217- functional_description:"Unknown Protein (AHRD V1)"; NbS00015488g0008.1 protein AED:0.49 eAED:0.49 QI:0|1|0.5|1|1|1|2|194|70; (*GB) gi|388505316|gb|AFK40724.1| (e_value=7e-16) unknown [Lotus japonicus];; (*ITAG) Solyc02g077410.2.1 (e_value=7e-20) genomic_reference:SL2.40ch02 gene_region:36930997-36935490 transcript_region:SL2.40ch02:36930997..36935490- functional_description:"heat-and acid-stable phosphoprotein (AHRD V1 *-*- B5X267_SALSA); contains Interpro domain(s) IPR019380 Casein kinase substrate, phosphoprotein PP28 "; NbS00015488g0104.1 protein AED:0.16 eAED:0.16 QI:29|0.33|0.25|0.5|0.66|0.75|4|0|254 NbS00015488g0103.1 protein AED:0.40 eAED:0.46 QI:0|0|0|0.75|0|0|4|0|170 NbS00025672g0005.1 protein AED:0.11 eAED:0.11 QI:234|1|1|1|1|1|6|308|379; (*GB) gi|296082305|emb|CBI21310.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q74ZH9|GDE1_ASHGO (e_value=2e-36) Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GDE1 PE=3 SV=1;; (*TAIR) AT3G02040.1 (e_value=0.0) | Symbols: SRG3 | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361;; (*ITAG) Solyc02g094400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49509646-49511664 transcript_region:SL2.40ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase "; GO:0006629,GO:0006071 NbS00018253g0004.1 protein AED:0.19 eAED:0.19 QI:214|1|0.75|1|1|1|4|0|507; (*GB) gi|5002354|gb|AAD37433.1|AF150881_1 (e_value=0.0) ferulate-5-hydroxylase [Solanum lycopersicum x Solanum peruvianum];; (*SWP) sp|Q42600|C84A1_ARATH (e_value=0.0) Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1;; (*TAIR) AT4G36220.1 (e_value=0.0) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc02g084570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42225222-42229073 transcript_region:SL2.40ch02:42225222..42229073- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018253g0106.1 protein AED:0.11 eAED:0.11 QI:204|0|0|1|0|0.5|2|0|267 NbS00018253g0109.1 protein AED:0.30 eAED:0.34 QI:51|0|0|0.7|0.88|0.9|10|0|284 NbS00011383g0007.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|1|1|2|0|562; (*GB) gi|255561981|ref|XP_002521999.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G04350.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF946) | chr3:1153972-1156469 REVERSE LENGTH=567;; (*ITAG) Solyc04g050140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44801065-44803621 transcript_region:SL2.40ch04:44801065..44803621+ functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00011383g0008.1 protein AED:0.29 eAED:0.32 QI:0|0.8|0.5|1|0.8|0.83|6|308|441; (*GB) gi|255561985|ref|XP_002522001.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q61687|ATRX_MOUSE (e_value=4e-66) Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3;; (*TAIR) AT1G08600.2 (e_value=2e-161) | Symbols: ATRX | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2724562-2733431 FORWARD LENGTH=1479;; (*ITAG) Solyc04g050150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44804160-44840698 transcript_region:SL2.40ch04:44804160..44840698- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 7 (AHRD V1 *--- CHD7_CHICK); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00060893g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|255551132|ref|XP_002516614.1| (e_value=3e-36) ring finger protein, putative [Ricinus communis];; (*TAIR) AT1G80400.1 (e_value=2e-29) | Symbols: | RING/U-box superfamily protein | chr1:30225864-30227360 FORWARD LENGTH=407;; (*ITAG) Solyc08g067770.2.1 (e_value=3e-53) genomic_reference:SL2.40ch08 gene_region:54003474-54009576 transcript_region:SL2.40ch08:54003474..54009576+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017238g0003.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|1|1|2|0|153; (*GB) gi|255537543|ref|XP_002509838.1| (e_value=6e-74) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SUS5|RHA1B_ARATH (e_value=4e-24) E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1;; (*TAIR) AT3G61460.1 (e_value=2e-62) | Symbols: BRH1 | brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170;; (*ITAG) Solyc08g081370.1.1 (e_value=8e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61596346-61596843 transcript_region:SL2.40ch08:61596346..61596843- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q30D22_PONTR); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00017238g0004.1 protein AED:0.36 eAED:0.42 QI:310|1|0.5|1|1|1|2|2|43 NbS00011274g0006.1 protein AED:0.17 eAED:0.17 QI:419|1|0.88|1|0.75|0.88|9|0|625; (*GB) gi|225462949|ref|XP_002268416.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At1g69420-like [Vitis vinifera];; (*SWP) sp|Q9C533|ZDHC1_ARATH (e_value=0.0) Probable S-acyltransferase At1g69420 OS=Arabidopsis thaliana GN=At1g69420 PE=2 SV=2;; (*TAIR) AT1G69420.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr1:26093690-26096736 FORWARD LENGTH=596;; (*ITAG) Solyc05g012790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5958825-5964747 transcript_region:SL2.40ch05:5958825..5964747+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00011274g0003.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|66 NbS00024451g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|361; (*GB) gi|225428135|ref|XP_002281110.1| (e_value=8e-162) PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9LEL5|4OMT_COPJA (e_value=5e-84) 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=2e-128) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc12g009110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2431857-2435319 transcript_region:SL2.40ch12:2431857..2435319- go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase-like protein (AHRD V1 ***- Q9T003_ARATH); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00012786g0007.1 protein AED:0.18 eAED:0.22 QI:6|0.6|0.5|1|0.93|0.81|16|341|797; (*GB) gi|225458382|ref|XP_002281815.1| (e_value=0.0) PREDICTED: leishmanolysin-like peptidase [Vitis vinifera];; (*SWP) sp|Q29AK2|LMLN_DROPS (e_value=7e-40) Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura GN=GA17800 PE=3 SV=1;; (*TAIR) AT5G42620.2 (e_value=0.0) | Symbols: | metalloendopeptidases;zinc ion binding | chr5:17066630-17071766 FORWARD LENGTH=889;; (*ITAG) Solyc04g079900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61800538-61808304 transcript_region:SL2.40ch04:61800538..61808304- go_terms:GO:0016020 functional_description:"GP63 leishmanolysin (Metallo-peptidase clan ma(M) family m8) (AHRD V1 *--- A4H637_LEIBR); contains Interpro domain(s) IPR001577 Peptidase M8, leishmanolysin "; GO:0016020 NbS00026425g0011.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|1|1|7|0|268; (*GB) gi|21912927|emb|CAC84143.2| (e_value=5e-147) thioredoxin peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9C5R8|BAS1B_ARATH (e_value=9e-135) 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3;; (*TAIR) AT5G06290.1 (e_value=7e-136) | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin B | chr5:1919380-1921211 FORWARD LENGTH=273;; (*ITAG) Solyc01g007740.2.1 (e_value=6e-150) genomic_reference:SL2.40ch01 gene_region:1903993-1908309 transcript_region:SL2.40ch01:1903993..1908309- go_terms:GO:0016491,GO:0045454,GO:0051920 functional_description:"Peroxiredoxin (AHRD V1 **-- Q9FE12_PHAVU); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454,GO:0051920 NbS00026425g0014.1 protein AED:0.21 eAED:0.24 QI:0|0.92|0.78|1|0.61|0.64|14|0|551; (*GB) gi|297740186|emb|CBI30368.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNY0|E2FA_ARATH (e_value=1e-146) Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1;; (*TAIR) AT2G36010.1 (e_value=1e-149) | Symbols: E2F3, ATE2FA | E2F transcription factor 3 | chr2:15119688-15122893 FORWARD LENGTH=483;; (*ITAG) Solyc01g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1916300-1921403 transcript_region:SL2.40ch01:1916300..1921403+ go_terms:GO:0003700,GO:0003714 functional_description:"Transcription factor E2F (AHRD V1 **** Q9LEL4_DAUCA); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003700,GO:0003714 NbS00026425g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|1|1|2|171|217; (*GB) gi|356557001|ref|XP_003546807.1| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100794678 [Glycine max];; (*TAIR) AT2G36000.2 (e_value=5e-59) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:15117181-15118333 FORWARD LENGTH=318;; (*ITAG) Solyc01g007750.2.1 (e_value=3e-102) genomic_reference:SL2.40ch01 gene_region:1911479-1912823 transcript_region:SL2.40ch01:1911479..1912823+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00026425g0004.1 protein AED:0.07 eAED:0.67 QI:0|0|0.5|1|0|0.5|2|1051|618; (*GB) gi|359496995|ref|XP_003635394.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820-like [Vitis vinifera];; (*SWP) sp|Q9FH87|PP447_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1;; (*TAIR) AT5G65820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:26339876-26341789 REVERSE LENGTH=637;; (*ITAG) Solyc01g097130.2.1 (e_value=3e-82) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011429g0008.1 protein AED:0.00 eAED:0.00 QI:112|1|1|1|1|1|2|665|511; (*GB) gi|255560443|ref|XP_002521236.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17430.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr4:9725201-9726801 REVERSE LENGTH=507;; (*ITAG) Solyc08g078380.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59366607-59369289 transcript_region:SL2.40ch08:59366607..59369289+ go_terms:GO:0005975 functional_description:"CigA protein (AHRD V1 *-*- Q9HGR6_MUCCI)"; GO:0005975 NbS00011429g0007.1 protein AED:0.15 eAED:0.15 QI:360|1|1|1|0.85|0.8|15|303|664; (*GB) gi|109157676|pdb|2FON|A (e_value=0.0) Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato);; (*SWP) sp|O65202|ACOX1_ARATH (e_value=0.0) Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1;; (*TAIR) AT4G16760.1 (e_value=0.0) | Symbols: ACX1, ATACX1 | acyl-CoA oxidase 1 | chr4:9424930-9428689 REVERSE LENGTH=664;; (*ITAG) Solyc08g078390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59370516-59379975 transcript_region:SL2.40ch08:59370516..59379975+ go_terms:GO:0016401 functional_description:"Acyl-coenzyme A oxidase (AHRD V1 **** D7MCB8_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016401 NbS00015543g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.25|0|0.8|0.5|0.4|5|0|272; (*GB) gi|359494357|ref|XP_003634764.1| (e_value=2e-33) PREDICTED: uncharacterized protein At4g26485-like [Vitis vinifera];; (*TAIR) AT5G56075.1 (e_value=4e-19) | Symbols: | Domain of unknown function (DUF2431) | chr5:22709756-22710809 FORWARD LENGTH=256;; (*ITAG) Solyc07g065920.2.1 (e_value=2e-58) genomic_reference:SL2.40ch07 gene_region:64725051-64727923 transcript_region:SL2.40ch07:64725051..64727923+ go_terms:GO:0003676 functional_description:"Ferredoxin-fold anticodon-binding domain-containing protein 1 (AHRD V1 *--* FDXA1_HUMAN); contains Interpro domain(s) IPR019446 Domain of unknown function DUF2431 "; GO:0003676 NbS00025504g0008.1 protein AED:0.16 eAED:0.17 QI:0|0.33|0|1|1|1|4|0|166; (*GB) gi|225457642|ref|XP_002273277.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100246169 [Vitis vinifera];; (*TAIR) AT1G20870.1 (e_value=2e-37) | Symbols: | HSP20-like chaperones superfamily protein | chr1:7259287-7260775 REVERSE LENGTH=463;; (*ITAG) Solyc04g082740.2.1 (e_value=8e-74) genomic_reference:SL2.40ch04 gene_region:63900807-63902695 transcript_region:SL2.40ch04:63900807..63902695- functional_description:"Heat shock protein-like protein (AHRD V1 ***- Q84KA7_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00025504g0002.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|2|568|154; (*GB) gi|122703612|dbj|BAF45121.1| (e_value=7e-109) small heat shock protein [Nicotiana benthamiana];; (*TAIR) AT1G76440.3 (e_value=2e-43) | Symbols: | HSP20-like chaperones superfamily protein | chr1:28682371-28682999 REVERSE LENGTH=143;; (*ITAG) Solyc04g082720.2.1 (e_value=1e-87) genomic_reference:SL2.40ch04 gene_region:63893724-63895146 transcript_region:SL2.40ch04:63893724..63895146- functional_description:"Small heat shock protein (AHRD V1 ***- A2A1W7_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00029306g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.76|1|0.75|0.76|13|0|463; (*GB) gi|224120462|ref|XP_002331054.1| (e_value=5e-152) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15740.1 (e_value=6e-133) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc12g009870.1.1 (e_value=1e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3046369-3051336 transcript_region:SL2.40ch12:3046369..3051336+ functional_description:"Leucine-rich repeat-like protein (AHRD V1 ***- Q6K620_ORYSJ); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00029306g0006.1 protein AED:0.48 eAED:0.54 QI:0|0.33|0|0.75|0|0.25|4|117|72 NbS00029306g0007.1 protein AED:0.44 eAED:0.61 QI:0|0|0.33|1|0.5|0.66|3|15|72; (*GB) gi|224098509|ref|XP_002311199.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=9e-23) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=7e-24) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=2e-25) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00029306g0010.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|2|0|121; (*ITAG) Solyc03g025970.2.1 (e_value=2e-48) genomic_reference:SL2.40ch03 gene_region:7774947-7780827 transcript_region:SL2.40ch03:7774947..7780827+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9I4C0_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00038812g0002.1 protein AED:0.04 eAED:0.04 QI:113|0.87|0.66|1|1|1|9|375|502; (*GB) gi|356507889|ref|XP_003522695.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Glycine max];; (*SWP) sp|A7SDW5|EIF3L_NEMVE (e_value=8e-153) Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1;; (*TAIR) AT5G25757.1 (e_value=0.0) | Symbols: | RNA polymerase I-associated factor PAF67 | chr5:8965515-8967460 REVERSE LENGTH=514;; (*ITAG) Solyc08g068340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54646333-54651826 transcript_region:SL2.40ch08:54646333..54651826- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 6-interacting protein (AHRD V1 ***- B6SYA1_MAIZE); contains Interpro domain(s) IPR019382 RNA polymerase I-associated factor PAF67 "; GO:0005515 NbS00038812g0010.1 protein AED:0.06 eAED:0.06 QI:0|0.87|0.66|0.88|0.87|0.77|9|453|1070; (*GB) gi|16326135|dbj|BAB70511.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=2e-154) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT4G32730.2 (e_value=0.0) | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | Homeodomain-like protein | chr4:15791039-15795643 FORWARD LENGTH=995;; (*ITAG) Solyc08g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54627590-54635874 transcript_region:SL2.40ch08:54627590..54635874+ go_terms:GO:0003713,GO:0003700 functional_description:"Transcription factor myb (AHRD V1 *-** Q5QT32_ORYSA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003713,GO:0003700 NbS00004623g0002.1 protein AED:0.59 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|115489194|ref|NP_001067084.1| (e_value=2e-56) Os12g0571200 [Oryza sativa Japonica Group];; (*SWP) sp|Q9XGX7|TIM9_ORYSJ (e_value=5e-58) Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2;; (*TAIR) AT3G46560.1 (e_value=2e-51) | Symbols: TIM9, emb2474 | Tim10/DDP family zinc finger protein | chr3:17138632-17139301 FORWARD LENGTH=93;; (*ITAG) Solyc10g086510.1.1 (e_value=2e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64631079-64633156 transcript_region:SL2.40ch10:64631079..64633156+ go_terms:GO:0042719 functional_description:"Mitochondrial import inner membrane translocase subunit tim9 (AHRD V1 ***- A6MZE3_ORYSI); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0042719 NbS00008572g0002.1 protein AED:0.00 eAED:0.00 QI:517|1|1|1|1|1|2|0|67; (*GB) gi|356575568|ref|XP_003555911.1| (e_value=9e-34) PREDICTED: chaperone protein dnaJ 15-like [Glycine max];; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=4e-34) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=3e-35) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc04g007370.2.1 (e_value=5e-39) genomic_reference:SL2.40ch04 gene_region:1065839-1072643 transcript_region:SL2.40ch04:1065839..1072643- go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00023357g0011.1 protein AED:0.21 eAED:0.33 QI:0|0|0|1|1|1|2|0|152; (*ITAG) Solyc02g090790.1.1 (e_value=6e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46871204-46871887 transcript_region:SL2.40ch02:46871204..46871887- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00023357g0015.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0.6|1|0.77|0.8|10|0|2598; (*GB) gi|359480807|ref|XP_002277575.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266406 [Vitis vinifera];; (*TAIR) AT3G50370.1 (e_value=6e-145) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbS00023357g0014.1 protein AED:0.29 eAED:0.31 QI:30|0.5|0.14|1|0.66|0.85|7|0|319; (*GB) gi|357518947|ref|XP_003629762.1| (e_value=8e-96) Protein FAM135B [Medicago truncatula];; (*TAIR) AT1G29120.5 (e_value=5e-86) | Symbols: | Hydrolase-like protein family | chr1:10174481-10178143 FORWARD LENGTH=456;; (*ITAG) Solyc02g076870.2.1 (e_value=1e-97) genomic_reference:SL2.40ch02 gene_region:36561133-36572505 transcript_region:SL2.40ch02:36561133..36572505+ functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00023357g0016.1 protein AED:0.24 eAED:0.52 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|364283985|ref|YP_004940511.1| (e_value=1e-19) ycf3 gene product (chloroplast) [Boea hygrometrica];; (*SWP) sp|Q2VEH6|YCF3_SOLTU (e_value=1e-20) Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1;; (*ITAG) ATCG00360.1 (e_value=3e-20) | Symbols: YCF3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chrC:42584-43751 REVERSE LENGTH=126;; (*ITAG) Solyc09g015280.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8501572-8503547 transcript_region:SL2.40ch09:8501572..8503547+ functional_description:"Photosystem I assembly protein ycf3 (AHRD V1 ***- D3WDW8_9ROSI)"; NbC24113164g0002.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|73; (*ITAG) Solyc09g005760.2.1 (e_value=1e-16) genomic_reference:SL2.40ch09 gene_region:527331-535057 transcript_region:SL2.40ch09:527331..535057+ go_terms:GO:0032040 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 *-*- B6K6T5_SCHJY); contains Interpro domain(s) IPR006709 Small-subunit processome, Utp14 "; GO:0032040 NbS00044944g0001.1 protein AED:0.30 eAED:0.31 QI:0|1|1|1|1|1|12|392|485; (*GB) gi|296084832|emb|CBI27714.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5R9T5|SPTC1_PONAB (e_value=1e-115) Serine palmitoyltransferase 1 OS=Pongo abelii GN=SPTLC1 PE=2 SV=1;; (*TAIR) AT4G36480.2 (e_value=0.0) | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain base1 | chr4:17218598-17221124 FORWARD LENGTH=482;; (*ITAG) Solyc11g019950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:9815596-9821179 transcript_region:SL2.40ch11:9815596..9821179- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase (AHRD V1 **-- D3L310_9BACT); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00021464g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.85|0.5|1|0.71|0.87|8|0|412; (*GB) gi|58013371|gb|AAW63039.1| (e_value=0.0) plastidial delta-12 oleate desaturase [Olea europaea];; (*SWP) sp|P48627|FAD6C_BRANA (e_value=0.0) Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1;; (*TAIR) AT4G30950.1 (e_value=0.0) | Symbols: FAD6, FADC, SFD4 | fatty acid desaturase 6 | chr4:15057278-15059673 REVERSE LENGTH=448;; (*ITAG) Solyc07g005510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:400656-406292 transcript_region:SL2.40ch07:400656..406292+ go_terms:GO:0045485 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** D7MBK3_ARALY); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0045485 NbS00021464g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|362; (*GB) gi|356562579|ref|XP_003549547.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At2g24240-like [Glycine max];; (*SWP) sp|Q9ZUH1|Y2424_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1;; (*TAIR) AT2G24240.1 (e_value=0.0) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr2:10310838-10312163 FORWARD LENGTH=441;; (*ITAG) Solyc07g005520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:408207-409532 transcript_region:SL2.40ch07:408207..409532- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7LHH7_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00059484g0003.1 protein AED:0.12 eAED:0.12 QI:121|1|1|1|0.75|0.6|5|292|206; (*GB) gi|224139102|ref|XP_002326768.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|P41129|RL132_BRANA (e_value=1e-122) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.3 (e_value=4e-122) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc12g096150.1.1 (e_value=1e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63525594-63526796 transcript_region:SL2.40ch12:63525594..63526796+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0005840 NbS00021422g0002.1 protein AED:0.04 eAED:0.05 QI:959|0.5|0.66|1|0|0.33|3|716|363; (*GB) gi|225470656|ref|XP_002268213.1| (e_value=4e-47) PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Vitis vinifera];; (*SWP) sp|Q9LU68|CIA2_ARATH (e_value=8e-14) Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1;; (*TAIR) AT5G57180.3 (e_value=3e-15) | Symbols: CIA2 | chloroplast import apparatus 2 | chr5:23168393-23169523 FORWARD LENGTH=376;; (*ITAG) Solyc07g008540.2.1 (e_value=2e-116) genomic_reference:SL2.40ch07 gene_region:3466133-3469946 transcript_region:SL2.40ch07:3466133..3469946- go_terms:GO:0030528 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0030528 NbS00021422g0001.1 protein AED:0.31 eAED:0.31 QI:182|0.5|0.66|1|0|0.33|3|497|367; (*GB) gi|147784441|emb|CAN72725.1| (e_value=2e-66) hypothetical protein VITISV_015092 [Vitis vinifera];; (*SWP) sp|Q9LU68|CIA2_ARATH (e_value=5e-28) Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1;; (*TAIR) AT5G57180.2 (e_value=4e-29) | Symbols: CIA2 | chloroplast import apparatus 2 | chr5:23168393-23170763 FORWARD LENGTH=435;; (*ITAG) Solyc07g008540.2.1 (e_value=7e-147) genomic_reference:SL2.40ch07 gene_region:3466133-3469946 transcript_region:SL2.40ch07:3466133..3469946- go_terms:GO:0030528 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0030528 NbS00021422g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-52) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021422g0012.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|78 NbS00026617g0028.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.33|1|0.2|0.33|6|0|688; (*GB) gi|225464091|ref|XP_002269380.1| (e_value=0.0) PREDICTED: root phototropism protein 3 [Vitis vinifera];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=0.0) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT5G64330.1 (e_value=0.0) | Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746;; (*ITAG) Solyc01g105680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85527440-85530485 transcript_region:SL2.40ch01:85527440..85530485+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00026617g0025.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.25|1|0.66|0.5|4|0|331; (*GB) gi|224141201|ref|XP_002323963.1| (e_value=2e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|D4N500|DIOX1_PAPSO (e_value=9e-43) Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1;; (*TAIR) AT2G36690.1 (e_value=7e-66) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc01g105660.2.1 (e_value=8e-170) genomic_reference:SL2.40ch01 gene_region:85516723-85518629 transcript_region:SL2.40ch01:85516723..85518629+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_TOBAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00026617g0021.1 protein AED:0.24 eAED:0.26 QI:380|0.5|0.6|1|0.5|0.8|5|646|471; (*GB) gi|346230209|gb|AEO21918.1| (e_value=0.0) calcium-dependent protein kinase [Hevea brasiliensis];; (*SWP) sp|Q8W490|PEPK2_ARATH (e_value=4e-166) Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1;; (*TAIR) AT1G12680.1 (e_value=3e-167) | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase-related kinase 2 | chr1:4320123-4322269 REVERSE LENGTH=470;; (*ITAG) Solyc01g105670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85521003-85525251 transcript_region:SL2.40ch01:85521003..85525251+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** B6UA37_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00026617g0008.1 protein AED:0.12 eAED:0.21 QI:925|0.66|0.75|1|0|0.25|4|0|364; (*GB) gi|255563232|ref|XP_002522619.1| (e_value=4e-39) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9FMF4|SAC51_ARATH (e_value=2e-22) Transcription factor SAC51 OS=Arabidopsis thaliana GN=SAC51 PE=2 SV=1;; (*TAIR) AT5G64340.1 (e_value=2e-23) | Symbols: SAC51 | sequence-specific DNA binding transcription factors;transcription regulators | chr5:25730890-25731936 REVERSE LENGTH=348;; (*ITAG) Solyc01g105690.2.1 (e_value=3e-129) genomic_reference:SL2.40ch01 gene_region:85533511-85534745 transcript_region:SL2.40ch01:85533511..85534745- go_terms:GO:0003700 functional_description:"Transcription factor/ transcription regulator (AHRD V1 **** D7M240_ARALY); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00026617g0001.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|1|1|2|0|189; (*ITAG) Solyc09g008110.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026617g0013.1 protein AED:0.48 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|79; (*GB) gi|113205445|gb|AAW28576.2| (e_value=2e-16) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00026617g0024.1 protein AED:0.57 eAED:0.70 QI:0|0|0|0.5|0|0|2|0|104; (*ITAG) Solyc01g105650.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:85512689-85514504 transcript_region:SL2.40ch01:85512689..85514504+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00026617g0026.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|0|0|3|0|95; (*GB) gi|224141195|ref|XP_002323960.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21420.1 (e_value=5e-12) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7541579-7543221 FORWARD LENGTH=364;; (*ITAG) Solyc01g105660.2.1 (e_value=3e-30) genomic_reference:SL2.40ch01 gene_region:85516723-85518629 transcript_region:SL2.40ch01:85516723..85518629+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_TOBAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00000692g0016.1 protein AED:0.26 eAED:0.27 QI:649|1|0.88|1|0.87|0.77|9|0|361; (*GB) gi|224112513|ref|XP_002316217.1| (e_value=3e-180) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C778|ELP4_ARATH (e_value=1e-145) Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1;; (*TAIR) AT3G11220.1 (e_value=1e-146) | Symbols: ELO1 | Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=355;; (*ITAG) Solyc11g010950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3999243-4002830 transcript_region:SL2.40ch11:3999243..4002830+ go_terms:GO:0033588 functional_description:"Elongator complex protein 4 (AHRD V1 ***- ELP4_BOVIN); contains Interpro domain(s) IPR008728 Elongator complex protein 4 "; GO:0033588 NbS00000692g0025.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.6|1|0.25|0.6|5|0|343; (*GB) gi|25815120|emb|CAD29291.1| (e_value=0.0) alcohol NADP+ oxidoreductase [Solanum tuberosum];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=3e-166) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G39330.1 (e_value=3e-139) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc11g011340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000692g0021.1 protein AED:0.24 eAED:0.32 QI:0|0|0|1|0.5|0.66|3|0|219; (*GB) gi|224104041|ref|XP_002313293.1| (e_value=7e-51) cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=5e-52) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37970.1 (e_value=5e-43) | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrogenase 6 | chr4:17849672-17852145 FORWARD LENGTH=363;; (*ITAG) Solyc11g011330.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00000692g0011.1 protein AED:0.36 eAED:0.36 QI:328|1|1|1|1|0.8|5|730|176; (*GB) gi|224144875|ref|XP_002336182.1| (e_value=2e-86) cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=1e-84) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37990.1 (e_value=1e-72) | Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 | elicitor-activated gene 3-2 | chr4:17855964-17857388 FORWARD LENGTH=359;; (*ITAG) Solyc11g010960.1.1 (e_value=9e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4006687-4010471 transcript_region:SL2.40ch11:4006687..4010471- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- ADH2_BACST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000692g0012.1 protein AED:0.44 eAED:0.44 QI:0|0.33|0.5|1|1|1|4|0|221; (*GB) gi|25815120|emb|CAD29291.1| (e_value=2e-101) alcohol NADP+ oxidoreductase [Solanum tuberosum];; (*SWP) sp|Q2KNL6|GEDH1_OCIBA (e_value=1e-89) Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1;; (*TAIR) AT4G37980.1 (e_value=5e-76) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g010990.1.1 (e_value=1e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4026527-4029450 transcript_region:SL2.40ch11:4026527..4029450- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- ADH2_BACST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000692g0003.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.75|1|1|4|0|269; (*GB) gi|214014136|gb|ACJ61779.1| (e_value=8e-123) ELI3, partial [Nicotiana benthamiana];; (*SWP) sp|P93257|MTDH_MESCR (e_value=3e-79) Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=1e-71) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011340.1.1 (e_value=9e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000692g0022.1 protein AED:0.47 eAED:0.49 QI:0|0|0|1|0|0|2|0|59; (*SWP) sp|P42754|MTDH_PETCR (e_value=6e-15) Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1;; (*ITAG) Solyc11g011340.1.1 (e_value=9e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00010004g0005.1 protein AED:0.00 eAED:0.00 QI:80|1|1|1|0|0|2|60|109; (*GB) gi|255585910|ref|XP_002533628.1| (e_value=7e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G28703.1 (e_value=3e-44) | Symbols: | RmlC-like cupins superfamily protein | chr4:14166365-14166798 FORWARD LENGTH=107;; (*ITAG) Solyc09g064330.1.1 (e_value=5e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57095099-57095691 transcript_region:SL2.40ch09:57095099..57095691- functional_description:"Enzyme of the cupin superfamily (AHRD V1 ***- B6T5M3_MAIZE); contains Interpro domain(s) IPR008579 Protein of unknown function DUF861, cupin-3 "; NbS00010004g0010.1 protein AED:0.11 eAED:0.11 QI:303|1|1|1|0.75|0.6|5|285|516; (*GB) gi|225437937|ref|XP_002268789.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 26 [Vitis vinifera];; (*SWP) sp|Q8C6G8|WDR26_MOUSE (e_value=9e-97) WD repeat-containing protein 26 OS=Mus musculus GN=Wdr26 PE=1 SV=3;; (*TAIR) AT5G43920.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:17673397-17675630 FORWARD LENGTH=523;; (*ITAG) Solyc09g064320.2.1 (e_value=5e-155) genomic_reference:SL2.40ch09 gene_region:57087546-57094024 transcript_region:SL2.40ch09:57087546..57094024+ go_terms:GO:0003714 functional_description:"WD-repeat protein-like (AHRD V1 **-- Q9FND4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0003714 NbS00010004g0009.1 protein AED:0.18 eAED:0.18 QI:334|0.87|0.77|1|0.75|0.66|9|413|330; (*GB) gi|353703786|ref|NP_001238796.1| (e_value=0.0) alcohol dehydrogenase class III [Solanum lycopersicum];; (*SWP) sp|Q96533|ADHX_ARATH (e_value=0.0) Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2;; (*TAIR) AT5G43940.1 (e_value=0.0) | Symbols: HOT5, ADH2, GSNOR, ATGSNOR1, PAR2 | GroES-like zinc-binding dehydrogenase family protein | chr5:17684265-17686379 FORWARD LENGTH=379;; (*ITAG) Solyc09g064370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57150099-57154745 transcript_region:SL2.40ch09:57150099..57154745+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase (AHRD V1 **** Q1HQD0_BOMMO); contains Interpro domain(s) IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase "; GO:0004024 NbS00012254g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.33|0.83|0.6|0.5|6|0|447; (*GB) gi|356569294|ref|XP_003552838.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100785597 [Glycine max];; (*TAIR) AT3G55990.1 (e_value=0.0) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc05g052540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61910619-61915153 transcript_region:SL2.40ch05:61910619..61915153- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00012254g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.66|1|1|1|6|0|481; (*GB) gi|4704762|gb|AAD28258.1|AF128404_1 (e_value=0.0) cellulase homolog [Nicotiana alata];; (*SWP) sp|O64889|GUN12_ARATH (e_value=0.0) Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44540 PE=2 SV=1;; (*TAIR) AT2G44540.1 (e_value=0.0) | Symbols: AtGH9B9, GH9B9 | glycosyl hydrolase 9B9 | chr2:18386341-18388110 REVERSE LENGTH=491;; (*ITAG) Solyc05g052530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61903316-61907825 transcript_region:SL2.40ch05:61903316..61907825- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00000788g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|193527452|gb|ACF19791.1| (e_value=1e-147) NAC transcription factor [Nicotiana tabacum];; (*TAIR) AT5G46590.1 (e_value=2e-14) | Symbols: anac096, NAC096 | NAC domain containing protein 96 | chr5:18905679-18906811 FORWARD LENGTH=292;; (*ITAG) Solyc06g063380.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36442937-36444430 transcript_region:SL2.40ch06:36442937..36444430- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HYC2_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00000788g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|161; (*GB) gi|296089516|emb|CBI39335.3| (e_value=7e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WP01|PTR9_ARATH (e_value=3e-34) Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1;; (*TAIR) AT1G22540.1 (e_value=3e-35) | Symbols: | Major facilitator superfamily protein | chr1:7964202-7966222 FORWARD LENGTH=557;; (*ITAG) Solyc06g065020.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:36931096-36935734 transcript_region:SL2.40ch06:36931096..36935734- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00013910g0006.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|185; (*GB) gi|225445346|ref|XP_002281585.1| (e_value=7e-57) PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera];; (*TAIR) AT2G44300.1 (e_value=1e-30) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc06g069110.2.1 (e_value=1e-62) genomic_reference:SL2.40ch06 gene_region:39286953-39287833 transcript_region:SL2.40ch06:39286953..39287833- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B8LM50_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00046202g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|224068741|ref|XP_002326188.1| (e_value=3e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37035.1 (e_value=1e-78) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:15555374-15556780 REVERSE LENGTH=433;; (*ITAG) Solyc09g007950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1445361-1446737 transcript_region:SL2.40ch09:1445361..1446737+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046202g0007.1 protein AED:0.29 eAED:0.46 QI:0|0|0.5|1|0|0.5|2|174|69 NbS00046202g0006.1 protein AED:0.28 eAED:0.28 QI:263|0.5|0.66|1|0.5|0.66|3|395|105 NbS00011265g0006.1 protein AED:0.30 eAED:0.30 QI:114|1|0.9|1|0.88|0.9|10|0|430; (*GB) gi|237688244|gb|ACR15118.1| (e_value=0.0) choline monooxygenase [Lycium barbarum];; (*SWP) sp|Q9SZR0|CHMO_ARATH (e_value=0.0) Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2;; (*TAIR) AT4G29890.1 (e_value=0.0) | Symbols: | choline monooxygenase, putative (CMO-like) | chr4:14608868-14610905 FORWARD LENGTH=422;; (*ITAG) Solyc07g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3074619-3078496 transcript_region:SL2.40ch07:3074619..3078496+ go_terms:GO:0055114 functional_description:"Rieske (2Fe-2S) domain protein (AHRD V1 **-- Q024N8_SOLUE); contains Interpro domain(s) IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit "; GO:0055114 NbS00011265g0007.1 protein AED:0.28 eAED:0.28 QI:202|0.90|0.91|1|0.84|0.88|34|0|1048; (*GB) gi|350539882|ref|NP_001234817.1| (e_value=0.0) auto-inhibited Ca2 -transporting ATPase 10 [Solanum lycopersicum];; (*SWP) sp|Q9LF79|ACA8_ARATH (e_value=0.0) Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1;; (*TAIR) AT5G57110.2 (e_value=0.0) | Symbols: ACA8, AT-ACA8 | autoinhibited Ca2+ -ATPase, isoform 8 | chr5:23109729-23116857 REVERSE LENGTH=1074;; (*ITAG) Solyc07g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00035352g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc07g017980.1.1 (e_value=2e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:8734246-8734614 transcript_region:SL2.40ch07:8734246..8734614+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035352g0002.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|136; (*GB) gi|225424289|ref|XP_002284639.1| (e_value=6e-58) PREDICTED: uncharacterized protein LOC100247453 [Vitis vinifera];; (*TAIR) AT1G70780.1 (e_value=5e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc04g007840.2.1 (e_value=9e-76) genomic_reference:SL2.40ch04 gene_region:1515366-1517843 transcript_region:SL2.40ch04:1515366..1517843- functional_description:"Senescence-associated protein (AHRD V1 ***- B6TMS7_MAIZE)"; NbS00035352g0001.1 protein AED:0.22 eAED:0.58 QI:0|0|0|1|1|1|2|0|816; (*GB) gi|224139488|ref|XP_002323136.1| (e_value=1e-107) autoinhibited calcium ATPase [Populus trichocarpa];; (*SWP) sp|Q9LF79|ACA8_ARATH (e_value=6e-55) Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1;; (*TAIR) AT5G57110.2 (e_value=4e-56) | Symbols: ACA8, AT-ACA8 | autoinhibited Ca2+ -ATPase, isoform 8 | chr5:23109729-23116857 REVERSE LENGTH=1074;; (*ITAG) Solyc02g090560.2.1 (e_value=8e-90) genomic_reference:SL2.40ch02 gene_region:46674600-46677536 transcript_region:SL2.40ch02:46674600..46677536- go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00008401g0018.1 protein AED:0.21 eAED:0.23 QI:218|0.5|0.2|1|0.5|0.2|5|0|410; (*GB) gi|310892570|gb|ADP37427.1| (e_value=5e-34) ethylene-responsive-element-binding factor 12 [Petunia x hybrida];; (*SWP) sp|Q9LW48|ERF5_NICSY (e_value=7e-28) Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=1e-27) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093550.1.1 (e_value=6e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00008401g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.54|0.5|1|1|1|12|0|410; (*GB) gi|225439303|ref|XP_002267555.1| (e_value=3e-127) PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=3e-117) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT3G11910.2 (e_value=2e-118) | Symbols: UBP13 | ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1114;; (*ITAG) Solyc10g081610.1.1 (e_value=1e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00008401g0021.1 protein AED:0.29 eAED:0.39 QI:0|0|0|0.2|0.75|0.8|5|0|348; (*GB) gi|147774565|emb|CAN72282.1| (e_value=3e-20) hypothetical protein VITISV_043941 [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-14) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-15) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc06g005050.2.1 (e_value=6e-33) genomic_reference:SL2.40ch06 gene_region:24702-25845 transcript_region:SL2.40ch06:24702..25845- functional_description:"F-box/FBD/LRR-repeat protein At1g13570 (AHRD V1 ***- FDL1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00045522g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.6|1|1|1|5|0|357; (*GB) gi|255562709|ref|XP_002522360.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O80470|GDL38_ARATH (e_value=0.0) GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1;; (*TAIR) AT2G23540.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:10024366-10026058 FORWARD LENGTH=387;; (*ITAG) Solyc02g090210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46413177-46415425 transcript_region:SL2.40ch02:46413177..46415425+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At2g23540 (AHRD V1 **** GDL38_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00009587g0007.1 protein AED:0.06 eAED:0.06 QI:170|0.78|0.73|1|0.71|0.73|15|234|551; (*GB) gi|225461701|ref|XP_002283201.1| (e_value=0.0) PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera];; (*SWP) sp|B3DNN5|CDC16_ARATH (e_value=0.0) Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1;; (*TAIR) AT1G78770.1 (e_value=0.0) | Symbols: APC6 | anaphase promoting complex 6 | chr1:29617421-29621273 FORWARD LENGTH=543;; (*ITAG) Solyc12g014320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5135180-5145918 transcript_region:SL2.40ch12:5135180..5145918- go_terms:GO:0005488 functional_description:"Anaphase promoting complex subunit 6/cell division cycle protein (IC) (AHRD V1 **-- Q5SCA1_OSTTA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009587g0011.1 protein AED:0.24 eAED:0.24 QI:286|1|0.5|1|0|0.5|4|0|171; (*GB) gi|224117016|ref|XP_002317453.1| (e_value=3e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|P16273|PRPX_HORVU (e_value=6e-34) Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2;; (*TAIR) AT1G78780.3 (e_value=1e-85) | Symbols: | pathogenesis-related family protein | chr1:29621447-29622153 REVERSE LENGTH=176;; (*ITAG) Solyc12g014310.1.1 (e_value=2e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5129574-5133435 transcript_region:SL2.40ch12:5129574..5133435- functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbC24948044g0003.1 protein AED:0.19 eAED:0.47 QI:1|0.66|0.75|1|0.66|0.75|4|197|12 NbS00005611g0012.1 protein AED:0.02 eAED:0.02 QI:42|1|1|1|1|1|3|82|313; (*GB) gi|225432004|ref|XP_002279385.1| (e_value=1e-64) PREDICTED: probable WRKY transcription factor 48 [Vitis vinifera];; (*SWP) sp|Q9FGZ4|WRK48_ARATH (e_value=6e-40) Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1;; (*TAIR) AT5G49520.1 (e_value=4e-41) | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein 48 | chr5:20090890-20092867 FORWARD LENGTH=399;; (*ITAG) Solyc05g053380.2.1 (e_value=1e-57) genomic_reference:SL2.40ch05 gene_region:62631053-62633674 transcript_region:SL2.40ch05:62631053..62633674- go_terms:GO:0045449 functional_description:"WRKY transcription factor 31 (AHRD V1 *-*- C9DI20_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00005611g0014.1 protein AED:0.06 eAED:0.06 QI:151|0.66|0.85|1|0.66|0.57|7|574|166; (*GB) gi|225432002|ref|XP_002279358.1| (e_value=3e-89) PREDICTED: probable prefoldin subunit 3 [Vitis vinifera];; (*SWP) sp|P57741|PFD3_ARATH (e_value=2e-86) Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1;; (*TAIR) AT5G49510.2 (e_value=1e-87) | Symbols: PFD3 | prefoldin 3 | chr5:20080729-20082456 FORWARD LENGTH=195;; (*ITAG) Solyc05g053390.2.1 (e_value=7e-106) genomic_reference:SL2.40ch05 gene_region:62636005-62641398 transcript_region:SL2.40ch05:62636005..62641398- go_terms:GO:0015631 functional_description:"Prefoldin subunit 3 (AHRD V1 ***- B6TKE7_MAIZE); contains Interpro domain(s) IPR016655 Prefoldin, subunit 3 "; GO:0015631 NbS00023229g0003.1 protein AED:0.14 eAED:0.18 QI:0|0.83|0.85|1|0.5|0.42|7|3561|176 NbS00023229g0008.1 protein AED:0.53 eAED:0.53 QI:401|0|0.66|0.66|1|1|3|42|61 NbS00025753g0002.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|1|1|3|0|233; (*GB) gi|62867576|emb|CAI84653.1| (e_value=1e-93) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q8S8E3|PYL6_ARATH (e_value=3e-85) Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1;; (*TAIR) AT2G40330.1 (e_value=2e-86) | Symbols: PYL6, RCAR9 | PYR1-like 6 | chr2:16845177-16845824 REVERSE LENGTH=215;; (*ITAG) Solyc06g050500.2.1 (e_value=6e-117) genomic_reference:SL2.40ch06 gene_region:29665124-29666198 transcript_region:SL2.40ch06:29665124..29666198- go_terms:GO:0005515 functional_description:"Abscisic acid receptor PYL4 (AHRD V1 *--- PYL4_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0005515 NbS00017384g0003.1 protein AED:0.29 eAED:0.29 QI:385|0.5|0.2|0.6|1|1|5|89|45 NbS00029912g0009.1 protein AED:0.02 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|518; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=0.0) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=0.0) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00029912g0008.1 protein AED:0.19 eAED:0.20 QI:217|0.33|0.25|1|0.66|0.75|4|0|465; (*GB) gi|224127878|ref|XP_002320186.1| (e_value=3e-179) predicted protein [Populus trichocarpa];; (*TAIR) AT1G01430.1 (e_value=5e-152) | Symbols: TBL25 | TRICHOME BIREFRINGENCE-LIKE 25 | chr1:156953-158536 REVERSE LENGTH=456;; (*ITAG) Solyc01g095610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78581914-78585268 transcript_region:SL2.40ch01:78581914..78585268+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00007688g0001.1 protein AED:0.08 eAED:0.50 QI:637|1|0.5|1|0|0.5|2|0|554; (*GB) gi|225439084|ref|XP_002265092.1| (e_value=7e-132) PREDICTED: uncharacterized protein LOC100255416 [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=2e-24) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT5G01980.1 (e_value=2e-66) | Symbols: | RING/U-box superfamily protein | chr5:375542-377023 FORWARD LENGTH=493;; (*ITAG) Solyc09g074460.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61757436-61758569 transcript_region:SL2.40ch09:61757436..61758569+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007688g0002.1 protein AED:0.24 eAED:0.25 QI:0|0.62|0.66|0.88|1|1|9|0|377; (*GB) gi|255582036|ref|XP_002531815.1| (e_value=0.0) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT5G01990.1 (e_value=1e-171) | Symbols: | Auxin efflux carrier family protein | chr5:377373-379600 REVERSE LENGTH=431;; (*ITAG) Solyc10g074790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57831763-57835787 transcript_region:SL2.40ch10:57831763..57835787+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier family protein (AHRD V1 ***- D7M6D2_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0016021 NbS00000016g0008.1 protein AED:0.08 eAED:0.08 QI:94|1|1|1|1|1|10|63|284; (*GB) gi|142942524|gb|ABO93015.1| (e_value=0.0) putative origin-recognition complex subunit 6 [Solanum tuberosum];; (*SWP) sp|Q9ZVH3|ORC6_ARATH (e_value=6e-136) Origin recognition complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2;; (*TAIR) AT1G26840.1 (e_value=4e-137) | Symbols: ORC6, ATORC6 | origin recognition complex protein 6 | chr1:9298822-9300603 FORWARD LENGTH=284;; (*ITAG) Solyc05g007450.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2024697-2027697 transcript_region:SL2.40ch05:2024697..2027697+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 6 (AHRD V1 ***- B6TX59_MAIZE); contains Interpro domain(s) IPR008721 Origin recognition complex subunit 6 "; GO:0042802 NbS00000016g0011.1 protein AED:0.24 eAED:0.27 QI:0|0.33|0|1|0.66|0.5|4|0|312; (*GB) gi|142942523|gb|ABO93014.1| (e_value=3e-149) putative sterol desaturase [Solanum tuberosum];; (*SWP) sp|Q8VYI1|SBH1_ARATH (e_value=3e-122) Sphingoid base hydroxylase 1 OS=Arabidopsis thaliana GN=SBH1 PE=2 SV=1;; (*TAIR) AT1G69640.1 (e_value=3e-123) | Symbols: SBH1 | sphingoid base hydroxylase 1 | chr1:26193933-26195466 REVERSE LENGTH=260;; (*ITAG) Solyc05g007460.2.1 (e_value=2e-151) genomic_reference:SL2.40ch05 gene_region:2030433-2034096 transcript_region:SL2.40ch05:2030433..2034096+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 **-* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00000016g0001.1 protein AED:0.78 eAED:0.89 QI:0|0|0|0.5|1|1|4|0|126; (*GB) gi|255537695|ref|XP_002509914.1| (e_value=1e-16) aldose 1-epimerase, putative [Ricinus communis];; (*TAIR) AT4G23730.1 (e_value=2e-15) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=3e-26) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00060952g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|0.83|6|292|358; (*GB) gi|4160298|emb|CAA09852.1| (e_value=7e-161) cyclin D2.1 protein [Nicotiana tabacum];; (*SWP) sp|Q8LGA1|CCD41_ARATH (e_value=5e-90) Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2;; (*TAIR) AT5G65420.1 (e_value=4e-91) | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308;; (*ITAG) Solyc11g010460.1.1 (e_value=2e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3514298-3516600 transcript_region:SL2.40ch11:3514298..3516600- go_terms:GO:0005634 functional_description:"Cyclin D2 (AHRD V1 ***- Q8L6U0_DAUCA); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005634 NbS00012713g0022.1 protein AED:0.03 eAED:0.03 QI:1148|1|1|1|0.5|0.33|3|389|551; (*GB) gi|225427155|ref|XP_002277531.1| (e_value=0.0) PREDICTED: (R)-mandelonitrile lyase-like [Vitis vinifera];; (*SWP) sp|Q9SSM2|MDLL_ARATH (e_value=0.0) (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1;; (*TAIR) AT1G73050.1 (e_value=0.0) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc03g123820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00012713g0001.1 protein AED:0.20 eAED:0.20 QI:527|0.85|0.93|1|0.85|0.8|15|704|398; (*GB) gi|93117610|gb|ABE99707.1| (e_value=0.0) phytoene desaturase [Nicotiana benthamiana];; (*SWP) sp|P80093|PDS_CAPAN (e_value=0.0) 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1;; (*TAIR) AT4G14210.1 (e_value=0.0) | Symbols: PDS3, PDS, PDE226 | phytoene desaturase 3 | chr4:8190426-8194769 REVERSE LENGTH=566;; (*ITAG) Solyc03g123760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64554061-64561664 transcript_region:SL2.40ch03:64554061..64561664+ go_terms:GO:0016166 functional_description:"Phytoene desaturase"; GO:0016166 NbS00012713g0004.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|70; (*ITAG) Solyc04g049610.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:41716529-41723839 transcript_region:SL2.40ch04:41716529..41723839- functional_description:"Unknown Protein (AHRD V1)"; NbS00012713g0030.1 protein AED:0.03 eAED:0.03 QI:255|1|1|1|0|0|2|433|373; (*GB) gi|187761611|dbj|BAG31944.1| (e_value=0.0) MAP kinase kinase [Nicotiana benthamiana];; (*SWP) sp|Q8RXG3|M2K5_ARATH (e_value=9e-166) Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2;; (*TAIR) AT3G21220.1 (e_value=7e-167) | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445917-7446963 FORWARD LENGTH=348;; (*ITAG) Solyc03g123800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64579230-64580309 transcript_region:SL2.40ch03:64579230..64580309- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase kinase (AHRD V1 ***- Q7XAC9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012713g0026.1 protein AED:0.06 eAED:0.06 QI:195|1|1|1|0.75|0.8|5|390|318; (*GB) gi|224097470|ref|XP_002310948.1| (e_value=8e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|P38838|WSS1_YEAST (e_value=7e-30) DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1;; (*TAIR) AT1G55915.1 (e_value=1e-109) | Symbols: | zinc ion binding | chr1:20907663-20909429 FORWARD LENGTH=404;; (*ITAG) Solyc12g015660.1.1 (e_value=4e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5655855-5659081 transcript_region:SL2.40ch12:5655855..5659081- go_terms:GO:0005622 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7KN38_ARALY); contains Interpro domain(s) IPR013536 WLM "; GO:0005622 NbS00012713g0016.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|147820979|emb|CAN74605.1| (e_value=8e-23) hypothetical protein VITISV_025316 [Vitis vinifera];; (*SWP) sp|Q9S7P5|SPL12_ARATH (e_value=1e-18) Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1;; (*TAIR) AT3G60030.1 (e_value=7e-20) | Symbols: SPL12 | squamosa promoter-binding protein-like 12 | chr3:22165856-22169410 REVERSE LENGTH=927;; (*ITAG) Solyc05g053240.2.1 (e_value=2e-26) genomic_reference:SL2.40ch05 gene_region:62525730-62535803 transcript_region:SL2.40ch05:62525730..62535803+ go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00012713g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|98; (*ITAG) Solyc00g024170.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12187234-12187672 transcript_region:SL2.40ch00:12187234..12187672- functional_description:"Unknown Protein (AHRD V1)"; NbS00012713g0003.1 protein AED:0.27 eAED:0.31 QI:0|0.46|0.42|0.92|1|1|14|0|1491; (*GB) gi|255537393|ref|XP_002509763.1| (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9C7S5|PSYR1_ARATH (e_value=0.0) Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1;; (*TAIR) AT1G72300.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:27217679-27220966 REVERSE LENGTH=1095;; (*ITAG) Solyc03g123780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64565651-64568771 transcript_region:SL2.40ch03:64565651..64568771- go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00054160g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|210; (*GB) gi|225448487|ref|XP_002270666.1| (e_value=7e-71) PREDICTED: uncharacterized protein LOC100255332 [Vitis vinifera];; (*TAIR) AT3G56010.1 (e_value=4e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20788758-20789656 FORWARD LENGTH=201;; (*ITAG) Solyc03g095990.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:51231325-51231963 transcript_region:SL2.40ch03:51231325..51231963- functional_description:"Unknown Protein (AHRD V1)"; NbS00023557g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|4|377|461; (*GB) gi|255547696|ref|XP_002514905.1| (e_value=1e-124) LIGULELESS1 protein, putative [Ricinus communis];; (*SWP) sp|A2YGR5|SPL12_ORYSI (e_value=2e-62) Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1;; (*TAIR) AT5G43270.1 (e_value=1e-56) | Symbols: SPL2 | squamosa promoter binding protein-like 2 | chr5:17360527-17362143 REVERSE LENGTH=419;; (*ITAG) Solyc05g015510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10767268-10772201 transcript_region:SL2.40ch05:10767268..10772201- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding-like protein 11 (AHRD V1 ***- B6TF72_MAIZE); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00023557g0005.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|87 NbS00032705g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.66|1|1|1|3|315|218; (*GB) gi|255586811|ref|XP_002534019.1| (e_value=5e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G34320.1 (e_value=9e-80) | Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657;; (*ITAG) Solyc06g065460.2.1 (e_value=6e-95) genomic_reference:SL2.40ch06 gene_region:37243663-37253947 transcript_region:SL2.40ch06:37243663..37253947- functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00032705g0012.1 protein AED:0.30 eAED:0.32 QI:0|0.8|0.5|1|1|0.66|6|0|255; (*GB) gi|255586811|ref|XP_002534019.1| (e_value=2e-118) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G34320.1 (e_value=9e-105) | Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657;; (*ITAG) Solyc11g017000.1.1 (e_value=7e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7712545-7725625 transcript_region:SL2.40ch11:7712545..7725625+ functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00032705g0011.1 protein AED:0.25 eAED:0.32 QI:0|0.66|0.75|1|0.33|0.75|4|265|244; (*GB) gi|76573355|gb|ABA46782.1| (e_value=2e-104) unknown [Solanum tuberosum];; (*SWP) sp|B5DGI7|RBM8A_SALSA (e_value=1e-41) RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1;; (*TAIR) AT1G51510.1 (e_value=9e-64) | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:19103072-19104753 REVERSE LENGTH=202;; (*ITAG) Solyc06g065470.2.1 (e_value=3e-81) genomic_reference:SL2.40ch06 gene_region:37255674-37260503 transcript_region:SL2.40ch06:37255674..37260503- go_terms:GO:0005515 functional_description:"RNA-binding protein 8A (AHRD V1 *--* B6TR37_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00032036g0006.1 protein AED:0.00 eAED:0.00 QI:247|1|0.66|1|0.5|0.66|3|0|152; (*GB) gi|225446539|ref|XP_002279275.1| (e_value=2e-46) PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q9M2K6|E13L1_ARATH (e_value=5e-41) Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2;; (*TAIR) AT3G58100.1 (e_value=4e-42) | Symbols: PDCB5 | plasmodesmata callose-binding protein 5 | chr3:21515397-21516329 REVERSE LENGTH=180;; (*ITAG) Solyc07g053430.2.1 (e_value=9e-49) genomic_reference:SL2.40ch07 gene_region:59191123-59194910 transcript_region:SL2.40ch07:59191123..59194910- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B4FGE4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00032036g0008.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|297817392|ref|XP_002876579.1| (e_value=1e-31) pectinesterase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84R10|PME36_ARATH (e_value=4e-32) Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2;; (*TAIR) AT3G60730.1 (e_value=3e-33) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:22444955-22447226 FORWARD LENGTH=519;; (*ITAG) Solyc00g023470.1.1 (e_value=8e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00017344g0019.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.4|0.8|1|1|5|185|191; (*GB) gi|255551513|ref|XP_002516802.1| (e_value=7e-61) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G18970.1 (e_value=2e-62) | Symbols: | AWPM-19-like family protein | chr5:6333714-6334539 REVERSE LENGTH=171;; (*ITAG) Solyc01g080290.2.1 (e_value=6e-71) genomic_reference:SL2.40ch01 gene_region:72045510-72046798 transcript_region:SL2.40ch01:72045510..72046798+ functional_description:"Plasma membrane associated protein-like (AHRD V1 ***- Q8LG79_ARATH); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00017344g0024.1 protein AED:0.25 eAED:0.27 QI:0|0|0.33|1|0|0|3|0|403; (*GB) gi|297736961|emb|CBI26162.3| (e_value=2e-142) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYM2|PP393_ARATH (e_value=4e-93) Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2;; (*TAIR) AT5G18950.1 (e_value=3e-94) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6328519-6329970 REVERSE LENGTH=483;; (*ITAG) Solyc01g080310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72051326-72056689 transcript_region:SL2.40ch01:72051326..72056689+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LYJ1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017344g0018.1 protein AED:0.28 eAED:0.28 QI:6|1|0.84|1|1|1|13|0|432; (*GB) gi|40457328|gb|AAR86719.1| (e_value=0.0) glutamine synthetase GS58 [Nicotiana attenuata];; (*SWP) sp|O22506|GLNA2_DAUCA (e_value=0.0) Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1;; (*TAIR) AT5G35630.3 (e_value=0.0) | Symbols: GS2, GLN2, ATGSL1 | glutamine synthetase 2 | chr5:13831220-13833239 FORWARD LENGTH=430;; (*ITAG) Solyc01g080280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72039739-72045026 transcript_region:SL2.40ch01:72039739..72045026+ go_terms:GO:0004356 functional_description:"Glutamine synthetase (AHRD V1 ***- B5LAU9_CAPAN); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0004356 NbS00017344g0023.1 protein AED:0.33 eAED:0.36 QI:58|1|0.85|1|0.16|0.28|7|0|419; (*GB) gi|224102575|ref|XP_002312731.1| (e_value=7e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944H2|AB12I_ARATH (e_value=1e-139) Protein ABCI12, chloroplastic OS=Arabidopsis thaliana GN=ABCI12 PE=1 SV=1;; (*TAIR) AT3G21580.1 (e_value=8e-141) | Symbols: | cobalt ion transmembrane transporters | chr3:7602009-7603720 REVERSE LENGTH=391;; (*ITAG) Solyc01g080300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72047959-72052509 transcript_region:SL2.40ch01:72047959..72052509+ go_terms:GO:0009236 functional_description:"Cobalt transport protein (AHRD V1 ***- Q4C386_CROWT); contains Interpro domain(s) IPR003339 Cobalt transport protein "; GO:0009236 NbS00047944g0007.1 protein AED:0.08 eAED:0.08 QI:170|0.8|0.83|1|0.6|0.66|6|393|542; (*GB) gi|255574842|ref|XP_002528328.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54CV5|BUB1_DICDI (e_value=9e-21) Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1;; (*TAIR) AT5G05510.1 (e_value=2e-145) | Symbols: | Mad3/BUB1 homology region 1 | chr5:1630651-1632568 REVERSE LENGTH=471;; (*ITAG) Solyc06g051040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30628842-30632716 transcript_region:SL2.40ch06:30628842..30632716- functional_description:"Mitotic checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- BUB1_MOUSE); contains Interpro domain(s) IPR013212 Mad3/BUB1 homology region 1 "; NbS00021946g0007.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|1|1|3|69|492; (*GB) gi|224140293|ref|XP_002323517.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37730.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00021946g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|156118338|gb|ABU49727.1| (e_value=4e-29) non-specific lipid transfer protein a7 [Solanum tuberosum];; (*SWP) sp|O24037|NLTP1_SOLPN (e_value=5e-30) Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1;; (*TAIR) AT2G38530.1 (e_value=7e-18) | Symbols: LTP2, LP2, cdf3 | lipid transfer protein 2 | chr2:16128481-16128948 FORWARD LENGTH=118;; (*ITAG) Solyc10g075110.1.1 (e_value=9e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58157020-58157628 transcript_region:SL2.40ch10:58157020..58157628- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen "; GO:0006869 NbS00034971g0008.1 protein AED:0.36 eAED:0.47 QI:0|0|0|0.75|1|1|4|0|148 NbS00034971g0013.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|1|1|3|0|217; (*GB) gi|255585218|ref|XP_002533311.1| (e_value=1e-83) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FNP2|GDL75_ARATH (e_value=1e-36) GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1;; (*TAIR) AT5G08460.1 (e_value=8e-38) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:2733220-2735351 FORWARD LENGTH=385;; (*ITAG) Solyc06g065530.2.1 (e_value=4e-108) genomic_reference:SL2.40ch06 gene_region:37300109-37303848 transcript_region:SL2.40ch06:37300109..37303848- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00034971g0014.1 protein AED:0.12 eAED:0.13 QI:221|0.58|0.23|1|0.75|0.76|13|0|1656; (*GB) gi|147788261|emb|CAN65296.1| (e_value=0.0) hypothetical protein VITISV_042325 [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=4e-62) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT1G34260.1 (e_value=1e-179) | Symbols: FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A | chr1:12485967-12491799 FORWARD LENGTH=1456;; (*ITAG) Solyc06g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37308987-37316738 transcript_region:SL2.40ch06:37308987..37316738- go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7KK53_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbC25928981g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.25|1|0.33|0.75|4|0|117; (*GB) gi|224144326|ref|XP_002325262.1| (e_value=5e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LL84|DNLI4_ARATH (e_value=5e-58) DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1;; (*TAIR) AT5G57160.1 (e_value=4e-59) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219;; (*ITAG) Solyc07g017990.2.1 (e_value=9e-67) genomic_reference:SL2.40ch07 gene_region:8737595-8770718 transcript_region:SL2.40ch07:8737595..8770718+ go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- D7MMS2_ARALY); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00022145g0005.1 protein AED:0.18 eAED:0.81 QI:0|0|0.5|1|0|0.5|2|69|75 NbS00022145g0004.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|255555409|ref|XP_002518741.1| (e_value=7e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G55350.1 (e_value=1e-29) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406;; (*ITAG) Solyc01g107920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87066074-87067375 transcript_region:SL2.40ch01:87066074..87067375- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00031217g0005.1 protein AED:0.21 eAED:0.22 QI:0|0.75|0.44|1|0.75|0.66|9|0|711; (*GB) gi|255585357|ref|XP_002533375.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|P51281|YCF45_PORPU (e_value=1e-104) Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1;; (*TAIR) AT3G10420.2 (e_value=1e-139) | Symbols: SPD1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3239307-3242274 FORWARD LENGTH=684;; (*ITAG) Solyc11g008250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2479420-2484103 transcript_region:SL2.40ch11:2479420..2484103- go_terms:GO:0005524,GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- B4B323_9CHRO); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00031217g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|65; (*GB) gi|255543903|ref|XP_002513014.1| (e_value=2e-25) Ribosome-binding factor A, putative [Ricinus communis];; (*SWP) sp|O65693|RBFA_ARATH (e_value=4e-24) Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2;; (*TAIR) AT4G34730.1 (e_value=3e-25) | Symbols: | ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE LENGTH=215;; (*ITAG) Solyc01g110550.2.1 (e_value=6e-28) genomic_reference:SL2.40ch01 gene_region:88966945-88970984 transcript_region:SL2.40ch01:88966945..88970984- go_terms:GO:0003723 functional_description:"Ribosome-binding factor A (AHRD V1 **** B6TDG2_MAIZE); contains Interpro domain(s) IPR000238 Ribosome-binding factor A "; GO:0003723 NbS00036493g0012.1 protein AED:0.22 eAED:0.22 QI:0|0.5|1|1|0.5|1|3|293|535; (*GB) gi|45935137|gb|AAS79595.1| (e_value=0.0) putative serine/arginine (SR) protein kinase protein [Ipomoea trifida];; (*SWP) sp|P36616|DSK1_SCHPO (e_value=1e-118) Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=2 SV=2;; (*TAIR) AT3G44850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:16374617-16376931 REVERSE LENGTH=534;; (*ITAG) Solyc11g066650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49502098-49511327 transcript_region:SL2.40ch11:49502098..49511327+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M1J8_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036493g0010.1 protein AED:0.32 eAED:0.32 QI:171|1|1|1|1|1|9|1333|357; (*GB) gi|225436387|ref|XP_002271504.1| (e_value=3e-136) PREDICTED: magnesium transporter MRS2-A, chloroplastic [Vitis vinifera];; (*SWP) sp|Q058N4|MRS2B_ARATH (e_value=2e-121) Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana GN=MRS2-11 PE=1 SV=1;; (*TAIR) AT5G22830.1 (e_value=1e-122) | Symbols: ATMGT10, GMN10, MGT10, MRS2-11 | magnesium (Mg) transporter 10 | chr5:7627676-7630633 FORWARD LENGTH=459;; (*ITAG) Solyc11g066660.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49512562-49521520 transcript_region:SL2.40ch11:49512562..49521520- go_terms:GO:0016020 functional_description:"Magnesium transporter MRS2-1 (AHRD V1 ***- MRS21_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0016020 NbS00041042g0010.1 protein AED:0.19 eAED:0.19 QI:468|0.91|0.92|1|0.91|0.84|13|333|680; (*GB) gi|296089910|emb|CBI39729.3| (e_value=1e-81) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6AXS3|DEK_RAT (e_value=7e-16) Protein DEK OS=Rattus norvegicus GN=Dek PE=2 SV=1;; (*TAIR) AT5G55660.1 (e_value=1e-61) | Symbols: | DEK domain-containing chromatin associated protein | chr5:22539375-22543142 FORWARD LENGTH=778;; (*ITAG) Solyc07g065490.2.1 (e_value=1e-98) genomic_reference:SL2.40ch07 gene_region:64446017-64453329 transcript_region:SL2.40ch07:64446017..64453329+ functional_description:"Dek protein (AHRD V1 *--- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00041042g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|1|0.33|0.75|4|0|737; (*GB) gi|356527151|ref|XP_003532176.1| (e_value=1e-52) PREDICTED: uncharacterized protein LOC100813702 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=1e-44) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065520.2.1 (e_value=5e-65) genomic_reference:SL2.40ch07 gene_region:64464292-64467536 transcript_region:SL2.40ch07:64464292..64467536- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *--- Q9XEL4_PICGL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00041042g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255580369|ref|XP_002531012.1| (e_value=1e-71) ccaat-binding transcription factor subunit A, putative [Ricinus communis];; (*SWP) sp|O23310|NFYB3_ARATH (e_value=2e-72) Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1;; (*TAIR) AT4G14540.1 (e_value=2e-73) | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161;; (*ITAG) Solyc07g065500.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64453920-64454468 transcript_region:SL2.40ch07:64453920..64454468- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00020348g0007.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|600; (*GB) gi|147799284|emb|CAN76998.1| (e_value=0.0) hypothetical protein VITISV_007763 [Vitis vinifera];; (*SWP) sp|Q9FHG4|LRKS7_ARATH (e_value=0.0) Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1;; (*TAIR) AT5G55830.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:22594655-22596700 FORWARD LENGTH=681;; (*ITAG) Solyc07g065610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64532046-64534046 transcript_region:SL2.40ch07:64532046..64534046+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00020348g0006.1 protein AED:0.08 eAED:0.08 QI:125|0.71|0.87|0.87|0.42|0.75|8|174|762; (*GB) gi|225461941|ref|XP_002266069.1| (e_value=0.0) PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera];; (*SWP) sp|Q9LG26|PARN_ARATH (e_value=0.0) Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2;; (*TAIR) AT1G55870.1 (e_value=0.0) | Symbols: ATPARN, AHG2 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:20895663-20898359 FORWARD LENGTH=689;; (*ITAG) Solyc07g065620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64535444-64540160 transcript_region:SL2.40ch07:64535444..64540160- go_terms:GO:0004540 functional_description:"Poly(A)-specific ribonuclease PARN-like protein (AHRD V1 *-** D0N750_PHYIN); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0004540 NbS00012776g0004.1 protein AED:0.57 eAED:0.76 QI:0|0|0|1|0|0|3|0|142 NbS00005046g0010.1 protein AED:0.21 eAED:0.23 QI:0|0.87|0.66|1|0.62|0.66|9|367|543; (*GB) gi|225432596|ref|XP_002281432.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Vitis vinifera];; (*SWP) sp|C0LGI2|Y1677_ARATH (e_value=1e-50) Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1;; (*TAIR) AT3G05990.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:1797116-1799732 REVERSE LENGTH=517;; (*ITAG) Solyc09g075730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62847311-62851664 transcript_region:SL2.40ch09:62847311..62851664+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00005046g0008.1 protein AED:0.24 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|122 NbS00005046g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|147790057|emb|CAN75979.1| (e_value=1e-84) hypothetical protein VITISV_012183 [Vitis vinifera];; (*TAIR) AT3G05980.1 (e_value=2e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:1795514-1796251 FORWARD LENGTH=245;; (*ITAG) Solyc09g075740.1.1 (e_value=3e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62852280-62852996 transcript_region:SL2.40ch09:62852280..62852996- functional_description:"Unknown Protein (AHRD V1)"; NbS00053486g0010.1 protein AED:0.03 eAED:0.03 QI:197|1|1|1|1|1|5|272|230; (*GB) gi|297794281|ref|XP_002865025.1| (e_value=7e-111) F-box family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FH99|FB302_ARATH (e_value=4e-110) F-box protein At5g67140 OS=Arabidopsis thaliana GN=At5g67140 PE=2 SV=1;; (*TAIR) AT5G67140.1 (e_value=3e-111) | Symbols: | F-box/RNI-like superfamily protein | chr5:26794009-26795213 REVERSE LENGTH=228;; (*ITAG) Solyc02g093220.2.1 (e_value=5e-155) genomic_reference:SL2.40ch02 gene_region:48735362-48737955 transcript_region:SL2.40ch02:48735362..48737955- functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 ***- B6TAC3_MAIZE); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00053486g0012.1 protein AED:0.07 eAED:0.07 QI:205|0.82|0.77|1|0.64|0.77|18|748|737; (*GB) gi|34393750|dbj|BAC84951.1| (e_value=0.0) PHCLF2 [Petunia x hybrida];; (*SWP) sp|P93831|CLF_ARATH (e_value=0.0) Histone-lysine N-methyltransferase CLF OS=Arabidopsis thaliana GN=CLF PE=1 SV=2;; (*TAIR) AT2G23380.1 (e_value=0.0) | Symbols: CLF, ICU1, SDG1, SET1 | SET domain-containing protein | chr2:9955570-9960117 FORWARD LENGTH=902;; (*ITAG) Solyc03g044380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12923432-12932842 transcript_region:SL2.40ch03:12923432..12932842+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00053486g0008.1 protein AED:0.18 eAED:0.18 QI:120|0.75|0.55|1|1|1|9|228|468; (*GB) gi|356563608|ref|XP_003550053.1| (e_value=0.0) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=0.0) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT5G67130.1 (e_value=0.0) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr5:26791599-26793649 FORWARD LENGTH=426;; (*ITAG) Solyc02g093210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48731185-48735258 transcript_region:SL2.40ch02:48731185..48735258+ go_terms:GO:0023034,GO:0006629,GO:0005975 functional_description:"MAPprotein kinase-like protein (AHRD V1 **-- Q6YW97_ORYSJ); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005975 NbS00008177g0003.1 protein AED:0.13 eAED:0.13 QI:261|0.88|1|1|1|1|10|499|375; (*GB) gi|296086494|emb|CBI32083.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VXV4|DNJ16_ARATH (e_value=0.0) Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1;; (*TAIR) AT1G24120.1 (e_value=0.0) | Symbols: ARL1 | ARG1-like 1 | chr1:8529283-8531946 REVERSE LENGTH=436;; (*ITAG) Solyc05g006240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:898981-903747 transcript_region:SL2.40ch05:898981..903747- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 16 (AHRD V1 ***- B6THE8_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00008177g0019.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0.66|0.75|4|0|291; (*GB) gi|255558378|ref|XP_002520216.1| (e_value=3e-70) IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis];; (*SWP) sp|Q851L5|ILL3_ORYSJ (e_value=5e-46) IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1;; (*TAIR) AT1G51760.1 (e_value=2e-46) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc05g006220.2.1 (e_value=7e-91) genomic_reference:SL2.40ch05 gene_region:883041-887278 transcript_region:SL2.40ch05:883041..887278- go_terms:GO:0010179 functional_description:"IAA-amino acid hydrolase (AHRD V1 **** D5FTH2_POPTO); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00008177g0015.1 protein AED:0.17 eAED:0.17 QI:263|1|1|1|0.5|0.33|3|327|124; (*GB) gi|147823253|emb|CAN66341.1| (e_value=5e-46) hypothetical protein VITISV_018558 [Vitis vinifera];; (*SWP) sp|O49453|Y4844_ARATH (e_value=4e-36) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT1G23750.1 (e_value=3e-48) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:8400638-8401171 FORWARD LENGTH=137;; (*ITAG) Solyc05g005510.2.1 (e_value=2e-43) genomic_reference:SL2.40ch05 gene_region:368271-370985 transcript_region:SL2.40ch05:368271..370985+ functional_description:"DNA-binding related protein (Fragment) (AHRD V1 ***- A9XNX9_9MYRT); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00008177g0022.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|1|0|0.25|4|0|182; (*GB) gi|224117208|ref|XP_002331748.1| (e_value=7e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=1e-68) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.3 (e_value=1e-70) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16956681-16959875 REVERSE LENGTH=693;; (*ITAG) Solyc02g061850.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00008177g0016.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|189; (*GB) gi|225457136|ref|XP_002280359.1| (e_value=3e-68) PREDICTED: peroxidase 65 [Vitis vinifera];; (*SWP) sp|O48677|PER6_ARATH (e_value=2e-56) Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1;; (*TAIR) AT1G24110.1 (e_value=1e-57) | Symbols: | Peroxidase superfamily protein | chr1:8527838-8528818 FORWARD LENGTH=326;; (*ITAG) Solyc05g006230.1.1 (e_value=7e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:896569-897576 transcript_region:SL2.40ch05:896569..897576+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** B2D2H2_BRAOL); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00029279g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|93115321|gb|ABE98329.1| (e_value=4e-50) SRC2-like protein [Nicotiana benthamiana];; (*TAIR) AT1G09070.1 (e_value=9e-29) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc08g028990.1.1 (e_value=1e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:21927524-21928318 transcript_region:SL2.40ch08:21927524..21928318- go_terms:GO:0005515 functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J6_NICBE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005515 NbS00033925g0006.1 protein AED:0.05 eAED:0.05 QI:468|1|0.92|1|0.75|0.76|13|168|773; (*GB) gi|296086714|emb|CBI32349.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q03516|RSN1_YEAST (e_value=3e-26) Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1;; (*TAIR) AT4G02900.1 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785;; (*ITAG) Solyc06g084330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45777999-45781628 transcript_region:SL2.40ch06:45777999..45781628+ go_terms:GO:0016020 functional_description:"Hv711N16.16 (Fragment) (AHRD V1 *--- Q8LLC2_HORVU); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00030516g0006.1 protein AED:0.50 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|118 NbS00030516g0002.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|1|1|3|0|383; (*GB) gi|359494119|ref|XP_003634722.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100852441 [Vitis vinifera];; (*TAIR) AT1G32120.1 (e_value=2e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064400.1.1 (e_value=3e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63801554-63803617 transcript_region:SL2.40ch07:63801554..63803617- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *-*- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00030516g0007.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0|0|3|0|270; (*GB) gi|359494119|ref|XP_003634722.1| (e_value=3e-45) PREDICTED: uncharacterized protein LOC100852441 [Vitis vinifera];; (*TAIR) AT1G50820.1 (e_value=3e-36) | Symbols: | Aminotransferase-like, plant mobile domain family protein | chr1:18833275-18834861 REVERSE LENGTH=528;; (*ITAG) Solyc07g064400.1.1 (e_value=3e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63801554-63803617 transcript_region:SL2.40ch07:63801554..63803617- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *-*- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00034008g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=2e-41) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9SA68|GRXS1_ARATH (e_value=7e-38) Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1;; (*TAIR) AT1G03020.1 (e_value=5e-39) | Symbols: | Thioredoxin superfamily protein | chr1:698207-698515 REVERSE LENGTH=102;; (*ITAG) Solyc05g051730.1.1 (e_value=9e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61271785-61272096 transcript_region:SL2.40ch05:61271785..61272096+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00034008g0013.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0.5|0.33|3|0|269; (*GB) gi|297825059|ref|XP_002880412.1| (e_value=4e-79) hypothetical protein ARALYDRAFT_481063 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G21990.1 (e_value=1e-79) | Symbols: | Protein of unknown function, DUF617 | chr2:9359573-9360331 REVERSE LENGTH=252;; (*ITAG) Solyc05g051760.2.1 (e_value=5e-108) genomic_reference:SL2.40ch05 gene_region:61285892-61287727 transcript_region:SL2.40ch05:61285892..61287727- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00034008g0014.1 protein AED:0.12 eAED:0.13 QI:250|1|0.8|1|0.75|0.8|5|0|244; (*GB) gi|296082495|emb|CBI21500.3| (e_value=1e-88) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G09995.2 (e_value=7e-82) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:3125185-3126302 REVERSE LENGTH=257;; (*ITAG) Solyc05g051770.2.1 (e_value=7e-142) genomic_reference:SL2.40ch05 gene_region:61289825-61295357 transcript_region:SL2.40ch05:61289825..61295357- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01BD4_OSTTA)"; NbS00016564g0011.1 protein AED:0.39 eAED:0.39 QI:0|1|1|1|1|1|5|120|215; (*GB) gi|40287494|gb|AAR83861.1| (e_value=1e-79) putative lesion-inducing protein [Capsicum annuum];; (*TAIR) AT1G04340.1 (e_value=1e-47) | Symbols: | HR-like lesion-inducing protein-related | chr1:1163345-1164737 REVERSE LENGTH=159;; (*ITAG) Solyc06g053660.2.1 (e_value=2e-75) genomic_reference:SL2.40ch06 gene_region:32986118-32989875 transcript_region:SL2.40ch06:32986118..32989875+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6SK94_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00016564g0017.1 protein AED:0.56 eAED:0.56 QI:0|0|0|1|1|0.33|3|0|64 NbS00016564g0015.1 protein AED:0.21 eAED:0.21 QI:180|0.8|0.5|1|1|1|6|0|455; (*GB) gi|359478141|ref|XP_002271295.2| (e_value=0.0) PREDICTED: F-box protein SKIP16-like [Vitis vinifera];; (*SWP) sp|Q9LND7|SKI16_ARATH (e_value=2e-166) F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1;; (*TAIR) AT1G06110.1 (e_value=1e-167) | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 | chr1:1853237-1854938 REVERSE LENGTH=436;; (*ITAG) Solyc06g053340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32579636-32586698 transcript_region:SL2.40ch06:32579636..32586698+ go_terms:GO:0005515 functional_description:"ApaG protein (AHRD V1 *-*- A9F367_SORC5); contains Interpro domain(s) IPR007474 ApaG "; GO:0005515 NbS00016564g0019.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.66|1|1|1|3|0|311; (*GB) gi|255577193|ref|XP_002529479.1| (e_value=2e-90) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q04088|POF21_ARATH (e_value=3e-63) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1;; (*TAIR) AT1G06070.1 (e_value=7e-72) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:1835201-1837116 REVERSE LENGTH=423;; (*ITAG) Solyc06g053350.2.1 (e_value=2e-120) genomic_reference:SL2.40ch06 gene_region:32588534-32595646 transcript_region:SL2.40ch06:32588534..32595646+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00016564g0013.1 protein AED:0.43 eAED:0.43 QI:187|0.5|0.4|1|0.25|0.4|5|0|94; (*ITAG) Solyc01g079650.2.1 (e_value=5e-22) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00016564g0002.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|136 NbS00021707g0010.1 protein AED:0.25 eAED:0.26 QI:0|1|0.75|1|1|1|4|310|292; (*GB) gi|297798054|ref|XP_002866911.1| (e_value=4e-123) hypothetical protein ARALYDRAFT_353023 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8S8F8|GEM_ARATH (e_value=2e-120) GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1;; (*TAIR) AT2G22475.1 (e_value=2e-121) | Symbols: GEM | GRAM domain family protein | chr2:9541523-9544778 FORWARD LENGTH=299;; (*ITAG) Solyc04g014250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4544956-4551102 transcript_region:SL2.40ch04:4544956..4551102+ functional_description:"FIP1 (AHRD V1 **-- B6SNS7_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00021707g0002.1 protein AED:0.36 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-25) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021707g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|23|241; (*GB) gi|164562217|gb|ABY61023.1| (e_value=8e-75) zinc finger homeodomain protein 1 [Saruma henryi];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=1e-60) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT4G24660.1 (e_value=8e-62) | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein 22 | chr4:12724851-12725513 REVERSE LENGTH=220;; (*ITAG) Solyc04g014260.1.1 (e_value=8e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4560854-4561970 transcript_region:SL2.40ch04:4560854..4561970- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00021707g0007.1 protein AED:0.27 eAED:0.36 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|147834287|emb|CAN69659.1| (e_value=4e-26) hypothetical protein VITISV_013009 [Vitis vinifera];; (*TAIR) AT1G26290.1 (e_value=5e-14) | Symbols: | unknown protein; Has 126 Blast hits to 112 proteins in 36 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 3; Plants - 14; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). | chr1:9098051-9098555 FORWARD LENGTH=142;; (*ITAG) Solyc04g013200.1.1 (e_value=5e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4495150-4495647 transcript_region:SL2.40ch04:4495150..4495647- functional_description:"Unknown Protein (AHRD V1)"; NbS00021707g0013.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|4|0|197; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00024496g0010.1 protein AED:0.18 eAED:0.18 QI:183|1|0.8|1|1|0.8|5|200|516; (*GB) gi|225424132|ref|XP_002280212.1| (e_value=0.0) PREDICTED: MATE efflux family protein 5 [Vitis vinifera];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=2e-135) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT1G71140.1 (e_value=3e-166) | Symbols: | MATE efflux family protein | chr1:26824762-26826748 FORWARD LENGTH=485;; (*ITAG) Solyc05g008510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2849561-2853572 transcript_region:SL2.40ch05:2849561..2853572+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00024496g0011.1 protein AED:0.34 eAED:0.35 QI:118|1|0.75|1|1|0.75|4|0|363; (*GB) gi|225424128|ref|XP_002280178.1| (e_value=1e-153) PREDICTED: cyclin-D1-binding protein 1 homolog [Vitis vinifera];; (*TAIR) AT1G22970.1 (e_value=4e-123) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:8130840-8132199 REVERSE LENGTH=357;; (*ITAG) Solyc05g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2854726-2858237 transcript_region:SL2.40ch05:2854726..2858237+ functional_description:"Cyclin-D1-binding protein 1 homolog (AHRD V1 *-*- CCDB1_XENLA)"; NbS00024496g0009.1 protein AED:0.01 eAED:0.01 QI:183|1|1|1|1|1|4|308|349; (*GB) gi|255582927|ref|XP_002532235.1| (e_value=2e-154) Sec-independent protein translocase protein tatC, putative [Ricinus communis];; (*SWP) sp|P54086|TATC_SYNY3 (e_value=3e-83) Sec-independent protein translocase protein TatC OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=tatC PE=3 SV=1;; (*TAIR) AT2G01110.1 (e_value=2e-140) | Symbols: APG2, UNE3, PGA2, TATC | Sec-independent periplasmic protein translocase | chr2:83786-85088 REVERSE LENGTH=340;; (*ITAG) Solyc05g008530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2858442-2863385 transcript_region:SL2.40ch05:2858442..2863385- go_terms:GO:0008565 functional_description:"Sec-independent protein translocase TatC (AHRD V1 ***- Q3MG73_ANAVT); contains Interpro domain(s) IPR019822 Twin arginine-targeting protein translocase, TatC "; GO:0008565 NbS00058708g0002.1 protein AED:0.60 eAED:0.74 QI:0|0|0|0.66|1|1|3|0|70; (*ITAG) Solyc10g078570.1.1 (e_value=7e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59681484-59681768 transcript_region:SL2.40ch10:59681484..59681768+ functional_description:"Genomic DNA chromosome 5 P1 clone MKN22 (AHRD V1 ***- Q9LVC2_ARATH)"; NbS00017723g0004.1 protein AED:0.36 eAED:0.36 QI:102|0.87|0.77|1|0.75|0.88|9|0|396; (*GB) gi|356554991|ref|XP_003545824.1| (e_value=1e-159) PREDICTED: putative PAP-specific phosphatase, mitochondrial-like [Glycine max];; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=1e-146) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1;; (*TAIR) AT4G05090.1 (e_value=1e-147) | Symbols: | Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397;; (*ITAG) Solyc02g079270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38449863-38458570 transcript_region:SL2.40ch02:38449863..38458570+ go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase-like protein (AHRD V1 **** Q682R6_ARATH); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008441 NbS00022802g0005.1 protein AED:0.11 eAED:0.12 QI:0|0.33|0.14|1|0.66|0.42|7|0|1003; (*GB) gi|224069981|ref|XP_002303096.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G28760.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3741) | chr4:14208640-14211811 FORWARD LENGTH=924;; (*ITAG) Solyc06g083660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45288739-45294285 transcript_region:SL2.40ch06:45288739..45294285- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6B6 (AHRD V1 ***- Q9LKC1_ARATH)"; GO:0005515 NbC24304474g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|132; (*GB) gi|297829496|ref|XP_002882630.1| (e_value=3e-66) 60S ribosomal protein L4/L1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SF40|RL4A_ARATH (e_value=3e-67) 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1;; (*TAIR) AT3G09630.2 (e_value=2e-68) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=405;; (*ITAG) Solyc10g086010.1.1 (e_value=8e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00023260g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|0|0.33|3|0|486; (*GB) gi|225449066|ref|XP_002275108.1| (e_value=0.0) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=4e-31) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G39220.1 (e_value=0.0) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc05g056030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00020102g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|532; (*GB) gi|359494657|ref|XP_002264130.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9LIQ7|PP252_ARATH (e_value=6e-144) Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1;; (*TAIR) AT1G16480.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5625843-5628656 REVERSE LENGTH=937;; (*ITAG) Solyc01g081560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73258597-73261734 transcript_region:SL2.40ch01:73258597..73261734+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020102g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|470; (*GB) gi|255544628|ref|XP_002513375.1| (e_value=1e-156) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q0WSH6|PP312_ARATH (e_value=9e-61) Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1;; (*TAIR) AT1G16480.1 (e_value=9e-136) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5625843-5628656 REVERSE LENGTH=937;; (*ITAG) Solyc01g081560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73258597-73261734 transcript_region:SL2.40ch01:73258597..73261734+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039354g0001.1 protein AED:0.24 eAED:0.46 QI:0|0|0|1|1|1|2|0|119; (*GB) gi|643617|gb|AAA62115.1| (e_value=1e-24) ribulose 1,5-bisphosphate carboxylase, partial (chloroplast) [Caiophora lateritia];; (*SWP) sp|Q32397|RBL_HYDFO (e_value=3e-23) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Hydnophytum formicarum GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=2e-23) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=4e-24) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00016653g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.33|3|0|262; (*GB) gi|46849529|dbj|BAD17855.1| (e_value=2e-151) gibberellin 2-oxidase 1 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=3e-94) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G30040.2 (e_value=3e-83) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10538781 FORWARD LENGTH=268;; (*ITAG) Solyc07g061720.2.1 (e_value=3e-134) genomic_reference:SL2.40ch07 gene_region:61904916-61906322 transcript_region:SL2.40ch07:61904916..61906322- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL8_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00018100g0002.1 protein AED:0.36 eAED:0.42 QI:0|0|0|1|1|1|4|0|143; (*GB) gi|147843466|emb|CAN82069.1| (e_value=4e-48) hypothetical protein VITISV_010008 [Vitis vinifera];; (*SWP) sp|Q9FNA4|ELP1_ARATH (e_value=3e-37) Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1;; (*TAIR) AT5G13680.1 (e_value=2e-38) | Symbols: ELO2, ABO1 | IKI3 family protein | chr5:4410522-4415471 REVERSE LENGTH=1319;; (*ITAG) Solyc05g054630.2.1 (e_value=6e-67) genomic_reference:SL2.40ch05 gene_region:63646653-63652887 transcript_region:SL2.40ch05:63646653..63652887+ go_terms:GO:0003711 functional_description:"Elongator complex protein (AHRD V1 ***- C6H856_AJECH); contains Interpro domain(s) IPR006849 IKI3 "; GO:0003711 NbS00008837g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|225450887|ref|XP_002280481.1| (e_value=3e-33) PREDICTED: germin-like protein subfamily 1 member 19 [Vitis vinifera];; (*SWP) sp|Q6K5P9|GL22_ORYSJ (e_value=8e-29) Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1;; (*TAIR) AT1G18980.1 (e_value=3e-29) | Symbols: | RmlC-like cupins superfamily protein | chr1:6557364-6558026 REVERSE LENGTH=220;; (*ITAG) Solyc09g090010.2.1 (e_value=7e-45) genomic_reference:SL2.40ch09 gene_region:64931262-64932969 transcript_region:SL2.40ch09:64931262..64932969- go_terms:GO:0050162 functional_description:"Germin-like protein 12 (AHRD V1 ***- C6T5E1_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00008837g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|0.5|0.33|0.25|4|151|297; (*GB) gi|357445555|ref|XP_003593055.1| (e_value=1e-110) hypothetical protein MTR_2g007300 [Medicago truncatula];; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=7e-85) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1;; (*TAIR) AT3G26070.1 (e_value=5e-86) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:9526904-9528199 FORWARD LENGTH=242;; (*ITAG) Solyc11g044530.1.1 (e_value=6e-130) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:35876543-35884878 transcript_region:SL2.40ch11:35876543..35884878+ go_terms:GO:0009507 functional_description:"PAP fibrillin (AHRD V1 ***- A2Q498_MEDTR); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00008837g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|0|0.5|2|80|224; (*GB) gi|147852242|emb|CAN80134.1| (e_value=2e-85) hypothetical protein VITISV_012033 [Vitis vinifera];; (*SWP) sp|P92997|GL113_ARATH (e_value=3e-79) Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2;; (*TAIR) AT5G39110.1 (e_value=2e-79) | Symbols: | RmlC-like cupins superfamily protein | chr5:15657802-15658584 REVERSE LENGTH=222;; (*ITAG) Solyc09g089990.2.1 (e_value=2e-128) genomic_reference:SL2.40ch09 gene_region:64924934-64926504 transcript_region:SL2.40ch09:64924934..64926504- go_terms:GO:0050162 functional_description:"Germin-like protein 5 (AHRD V1 ***- A8QK91_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00008837g0011.1 protein AED:0.16 eAED:0.19 QI:14|0|0|1|0|0|4|0|137; (*GB) gi|225450875|ref|XP_002284284.1| (e_value=3e-32) PREDICTED: germin-like protein subfamily 1 member 17 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFF9|GL17_ARATH (e_value=6e-31) Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1;; (*TAIR) AT3G05950.1 (e_value=4e-32) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc09g090010.2.1 (e_value=1e-48) genomic_reference:SL2.40ch09 gene_region:64931262-64932969 transcript_region:SL2.40ch09:64931262..64932969- go_terms:GO:0050162 functional_description:"Germin-like protein 12 (AHRD V1 ***- C6T5E1_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00008837g0113.1 protein AED:0.30 eAED:0.35 QI:0|0.66|0.5|1|1|1|4|0|342 NbS00008837g0115.1 protein AED:0.08 eAED:0.08 QI:82|1|1|1|1|1|6|541|249 NbS00008837g0114.1 protein AED:0.25 eAED:0.26 QI:209|0.5|0.33|1|1|1|3|0|221 NbS00008837g0101.1 protein AED:0.11 eAED:0.30 QI:0|0|0|1|1|1|2|0|236 NbS00036109g0005.1 protein AED:0.05 eAED:0.06 QI:83|0.71|0.25|0.87|0.85|0.75|8|0|507; (*GB) gi|359477496|ref|XP_003631985.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854837 [Vitis vinifera];; (*SWP) sp|P59326|YTHD1_MOUSE (e_value=1e-45) YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1;; (*TAIR) AT1G48110.2 (e_value=3e-143) | Symbols: ECT7 | evolutionarily conserved C-terminal region 7 | chr1:17770339-17772806 REVERSE LENGTH=639;; (*ITAG) Solyc12g099090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00046046g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|10|0|650; (*GB) gi|225443782|ref|XP_002266057.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Vitis vinifera];; (*SWP) sp|C0LGQ4|MRH1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1;; (*TAIR) AT4G18640.1 (e_value=0.0) | Symbols: MRH1 | Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678;; (*ITAG) Solyc03g006130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:782748-790090 transcript_region:SL2.40ch03:782748..790090- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00010885g0013.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.2|0.6|1|1|5|0|241; (*GB) gi|297734024|emb|CBI15271.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42056|VDAC2_SOLTU (e_value=5e-52) Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=2e-47) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc03g113210.2.1 (e_value=3e-97) genomic_reference:SL2.40ch03 gene_region:57484817-57486106 transcript_region:SL2.40ch03:57484817..57486106+ go_terms:GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** B9I304_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00010885g0017.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|0|0.5|2|0|189; (*GB) gi|225456666|ref|XP_002271953.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera];; (*TAIR) AT1G74730.1 (e_value=4e-43) | Symbols: | Protein of unknown function (DUF1118) | chr1:28078995-28079831 FORWARD LENGTH=198;; (*ITAG) Solyc03g113240.2.1 (e_value=2e-64) genomic_reference:SL2.40ch03 gene_region:57496233-57497718 transcript_region:SL2.40ch03:57496233..57497718+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009500 Protein of unknown function DUF1118 "; NbS00010885g0001.1 protein AED:0.13 eAED:0.14 QI:276|0.75|0.8|1|0.75|0.8|5|462|484; (*GB) gi|297734029|emb|CBI15276.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=3e-159) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=2e-160) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc03g113250.2.1 (e_value=4e-171) genomic_reference:SL2.40ch03 gene_region:57498270-57503570 transcript_region:SL2.40ch03:57498270..57503570- go_terms:GO:0080054,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00010885g0004.1 protein AED:0.24 eAED:0.24 QI:142|1|0.8|1|1|1|5|0|305; (*GB) gi|46452120|gb|AAS98165.1| (e_value=0.0) hypersensitive-induced reaction protein [Capsicum annuum];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=0.0) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=0.0) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc03g113220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57486387-57489392 transcript_region:SL2.40ch03:57486387..57489392- go_terms:GO:0005515 functional_description:"SPFH domain/band 7 family protein (AHRD V1 **-- D7VZN9_9FLAO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00016702g0011.1 protein AED:0.27 eAED:0.27 QI:282|0.33|0.5|1|0.66|0.25|4|0|369; (*GB) gi|359488367|ref|XP_003633749.1| (e_value=2e-132) PREDICTED: abhydrolase domain-containing protein FAM108B1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q6DD70|F108C_XENLA (e_value=3e-52) Abhydrolase domain-containing protein FAM108C1 OS=Xenopus laevis GN=fam108c1 PE=2 SV=1;; (*TAIR) AT3G30380.1 (e_value=1e-127) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:11974424-11976571 FORWARD LENGTH=399;; (*ITAG) Solyc02g089320.2.1 (e_value=2e-168) genomic_reference:SL2.40ch02 gene_region:45756372-45760193 transcript_region:SL2.40ch02:45756372..45760193+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00016702g0001.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.33|1|1|3|0|182 NbS00016702g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|438; (*GB) gi|255585841|ref|XP_002533598.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9LFV5|FK111_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1;; (*TAIR) AT5G15710.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:5122791-5124137 FORWARD LENGTH=448;; (*ITAG) Solyc02g089310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45749178-45750494 transcript_region:SL2.40ch02:45749178..45750494- functional_description:"F-box family protein (AHRD V1 ***- B9N7N7_POPTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00031866g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.83|1|1|1|6|484|243; (*GB) gi|115485231|ref|NP_001067759.1| (e_value=2e-159) Os11g0312400 [Oryza sativa Japonica Group];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=5e-161) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G63400.1 (e_value=9e-151) | Symbols: ADK1 | adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246;; (*ITAG) Solyc03g111200.2.1 (e_value=9e-176) genomic_reference:SL2.40ch03 gene_region:55891362-55895244 transcript_region:SL2.40ch03:55891362..55895244- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00031866g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|1|1|6|0|546; (*GB) gi|224136085|ref|XP_002322236.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-60) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G63390.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:25390512-25392591 REVERSE LENGTH=559;; (*ITAG) Solyc03g111190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55888514-55890608 transcript_region:SL2.40ch03:55888514..55890608- functional_description:"Auxin-independent growth promoter-like protein (AHRD V1 ***- Q9FMW3_ARATH); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00012755g0007.1 protein AED:0.23 eAED:0.25 QI:0|1|1|1|1|1|4|321|289; (*GB) gi|255574887|ref|XP_002528350.1| (e_value=7e-102) ribonucleoprotein, chloroplast, putative [Ricinus communis];; (*SWP) sp|Q08935|ROC1_NICSY (e_value=2e-45) 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G60000.1 (e_value=6e-91) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258;; (*ITAG) Solyc09g090960.2.1 (e_value=8e-136) genomic_reference:SL2.40ch09 gene_region:65690701-65693271 transcript_region:SL2.40ch09:65690701..65693271- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 **-* Q8SMH8_PERAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00012755g0008.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0|0|2|0|239; (*GB) gi|147765323|emb|CAN76049.1| (e_value=1e-15) hypothetical protein VITISV_019381 [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=2e-12) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G02340.1 (e_value=3e-17) | Symbols: | RING/U-box superfamily protein | chr3:477032-478261 FORWARD LENGTH=409;; (*ITAG) Solyc11g011570.1.1 (e_value=8e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4638052-4639160 transcript_region:SL2.40ch11:4638052..4639160- go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_DANRE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00012755g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|0|0|3|0|108 NbS00034715g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|3|525|162; (*GB) gi|388498604|gb|AFK37368.1| (e_value=1e-70) unknown [Lotus japonicus];; (*SWP) sp|P81748|MIFH_TRITR (e_value=1e-22) Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2;; (*TAIR) AT5G01650.1 (e_value=2e-72) | Symbols: | Tautomerase/MIF superfamily protein | chr5:242734-244033 REVERSE LENGTH=115;; (*ITAG) Solyc10g076350.1.1 (e_value=1e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58620196-58623968 transcript_region:SL2.40ch10:58620196..58623968+ functional_description:"Macrophage migration inhibitory factor family protein (AHRD V1 ***- D7M6G9_ARALY); contains Interpro domain(s) IPR001398 Macrophage migration inhibitory factor "; NbS00054378g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|147853040|emb|CAN82321.1| (e_value=2e-72) hypothetical protein VITISV_021316 [Vitis vinifera];; (*SWP) sp|O82248|NFYB5_ARATH (e_value=6e-58) Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1;; (*TAIR) AT2G47810.1 (e_value=4e-59) | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160;; (*ITAG) Solyc06g009010.1.1 (e_value=7e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2953980-2954516 transcript_region:SL2.40ch06:2953980..2954516- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 *-** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00037431g0002.1 protein AED:0.69 eAED:0.83 QI:0|0|0|0.5|1|1|4|0|152; (*GB) gi|22711937|ref|NP_683825.1| (e_value=9e-16) photosystem II protein D2 [Chaetosphaeridium globosum];; (*SWP) sp|Q8M9W4|PSBD_CHAGL (e_value=3e-17) Photosystem II D2 protein OS=Chaetosphaeridium globosum GN=psbD PE=3 SV=1;; (*ITAG) ATCG00270.1 (e_value=2e-17) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353;; (*ITAG) Solyc00g230080.1.1 (e_value=4e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19614704-19615060 transcript_region:SL2.40ch00:19614704..19615060- go_terms:GO:0030077 functional_description:"Photosystem II D2 protein (AHRD V1 ***- D0FXW8_DUNSA); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00043876g0001.1 protein AED:0.00 eAED:0.00 QI:5|0|0.5|1|0|1|2|202|88; (*ITAG) Solyc07g009050.2.1 (e_value=2e-40) genomic_reference:SL2.40ch07 gene_region:4021150-4021740 transcript_region:SL2.40ch07:4021150..4021740- go_terms:GO:0006952 functional_description:"Unknown Protein (AHRD V1)"; GO:0006952 NbS00043876g0009.1 protein AED:0.19 eAED:0.70 QI:0|0|0.5|1|1|1|2|0|83 NbS00043876g0002.1 protein AED:0.01 eAED:0.01 QI:6|0|0.5|1|0|0.5|2|182|88; (*ITAG) Solyc07g009050.2.1 (e_value=5e-29) genomic_reference:SL2.40ch07 gene_region:4021150-4021740 transcript_region:SL2.40ch07:4021150..4021740- go_terms:GO:0006952 functional_description:"Unknown Protein (AHRD V1)"; GO:0006952 NbS00033163g0005.1 protein AED:0.13 eAED:0.13 QI:120|0.9|0.90|1|0.6|0.45|11|470|598; (*GB) gi|225444645|ref|XP_002277600.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 17-like [Vitis vinifera];; (*SWP) sp|Q7XJN0|RH17_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1;; (*TAIR) AT2G40700.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16976783-16979392 FORWARD LENGTH=609;; (*ITAG) Solyc07g042270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52721295-52727955 transcript_region:SL2.40ch07:52721295..52727955- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** C6LZE8_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00037875g0005.1 protein AED:0.26 eAED:0.73 QI:0|0|0|1|0|0|2|0|112; (*ITAG) Solyc11g020710.1.1 (e_value=6e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:11930953-11931234 transcript_region:SL2.40ch11:11930953..11931234+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037875g0004.1 protein AED:0.33 eAED:0.66 QI:0|0|0|1|0|0|2|0|82; (*ITAG) Solyc11g020710.1.1 (e_value=2e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:11930953-11931234 transcript_region:SL2.40ch11:11930953..11931234+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010032g0005.1 protein AED:0.31 eAED:0.37 QI:0|0.62|0.55|1|0.62|0.66|9|298|264; (*GB) gi|224138464|ref|XP_002326609.1| (e_value=3e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=1e-113) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=8e-115) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=1e-119) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbS00060706g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|307; (*GB) gi|357440917|ref|XP_003590736.1| (e_value=8e-19) hypothetical protein MTR_1g073220 [Medicago truncatula];; (*ITAG) Solyc09g066390.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60409128-60409939 transcript_region:SL2.40ch09:60409128..60409939+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032570g0002.1 protein AED:0.09 eAED:0.11 QI:86|0.5|0.4|1|1|1|5|0|347; (*GB) gi|156070802|gb|ABU45214.1| (e_value=2e-130) unknown [Solanum bulbocastanum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=4e-41) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G66710.1 (e_value=3e-79) | Symbols: | Protein kinase superfamily protein | chr5:26636609-26638564 FORWARD LENGTH=405;; (*ITAG) Solyc02g085620.2.1 (e_value=6e-134) genomic_reference:SL2.40ch02 gene_region:43021184-43027761 transcript_region:SL2.40ch02:43021184..43027761- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B6T8S1_MAIZE); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004712 NbS00023234g0006.1 protein AED:0.34 eAED:0.35 QI:0|0.55|0.4|0.9|0.66|0.7|10|0|550; (*GB) gi|296084812|emb|CBI27694.3| (e_value=6e-66) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G17270.1 (e_value=2e-52) | Symbols: | Protein prenylyltransferase superfamily protein | chr5:5679995-5685597 FORWARD LENGTH=899;; (*ITAG) Solyc07g008760.2.1 (e_value=8e-122) genomic_reference:SL2.40ch07 gene_region:3728618-3747433 transcript_region:SL2.40ch07:3728618..3747433- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat (TPR)-containing protein-like protein (AHRD V1 ***- Q84NS6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00039357g0003.1 protein AED:0.02 eAED:0.02 QI:133|1|1|1|1|1|4|219|326; (*GB) gi|225458715|ref|XP_002285006.1| (e_value=0.0) PREDICTED: probable isoaspartyl peptidase/L-asparaginase 2 [Vitis vinifera];; (*SWP) sp|Q8GXG1|ASPGB_ARATH (e_value=0.0) Probable isoaspartyl peptidase/L-asparaginase 2 OS=Arabidopsis thaliana GN=At3g16150 PE=2 SV=2;; (*TAIR) AT3G16150.1 (e_value=0.0) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:5471794-5473033 FORWARD LENGTH=325;; (*ITAG) Solyc04g078460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60778028-60779588 transcript_region:SL2.40ch04:60778028..60779588- go_terms:GO:0003948 functional_description:"N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 **** ASPG_ELIMR); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbC25292626g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|159; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=2e-112) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=7e-114) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=3e-92) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=1e-113) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00035082g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|224054544|ref|XP_002298313.1| (e_value=3e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-17) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=1e-18) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc04g056740.1.1 (e_value=5e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00035082g0005.1 protein AED:0.10 eAED:0.10 QI:179|1|1|1|1|1|4|256|319; (*GB) gi|450357|emb|CAA82646.1| (e_value=0.0) ethylene forming enzyme (EFE) [Nicotiana tabacum];; (*SWP) sp|Q08507|ACCO3_PETHY (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1;; (*TAIR) AT1G05010.1 (e_value=2e-167) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc07g049530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57154220-57156391 transcript_region:SL2.40ch07:57154220..57156391+ go_terms:GO:0005507 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q94F66_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0005507 NbS00010441g0006.1 protein AED:0.11 eAED:0.12 QI:0|0|0.2|1|0.75|0.6|5|284|587; (*GB) gi|350536255|ref|NP_001234237.1| (e_value=9e-179) auxin response factor 17 [Solanum lycopersicum];; (*SWP) sp|Q84WU6|ARFQ_ARATH (e_value=1e-130) Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1;; (*TAIR) AT1G77850.1 (e_value=9e-132) | Symbols: ARF17 | auxin response factor 17 | chr1:29272405-29275193 FORWARD LENGTH=585;; (*ITAG) Solyc11g013480.1.1 (e_value=3e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6508855-6511349 transcript_region:SL2.40ch11:6508855..6511349- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 3 (AHRD V1 ***- A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355 NbS00010441g0002.1 protein AED:0.17 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|229; (*GB) gi|225437290|ref|XP_002262984.1| (e_value=9e-131) PREDICTED: dephospho-CoA kinase domain-containing protein [Vitis vinifera];; (*SWP) sp|Q0P4C4|DCAKD_DANRE (e_value=7e-60) Dephospho-CoA kinase domain-containing protein OS=Danio rerio GN=dcakd PE=2 SV=1;; (*TAIR) AT2G27490.2 (e_value=3e-116) | Symbols: ATCOAE | dephospho-CoA kinase family | chr2:11748087-11749009 REVERSE LENGTH=232;; (*ITAG) Solyc11g013460.1.1 (e_value=6e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6482955-6494258 transcript_region:SL2.40ch11:6482955..6494258+ go_terms:GO:0005515,GO:0004140 functional_description:"Dephospho-CoA kinase (AHRD V1 **** B6T8Y9_MAIZE); contains Interpro domain(s) IPR001977 Dephospho-CoA kinase "; GO:0005515,GO:0004140 NbS00031098g0006.1 protein AED:0.18 eAED:0.18 QI:96|1|1|1|1|1|2|68|230; (*GB) gi|464621|sp|P34091.1|RL6_MESCR (e_value=5e-104) RecName: Full=60S ribosomal protein L6; AltName: Full=YL16-like;; (*SWP) sp|P34091|RL6_MESCR (e_value=1e-105) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1;; (*TAIR) AT1G74050.1 (e_value=4e-99) | Symbols: | Ribosomal protein L6 family protein | chr1:27847256-27848680 REVERSE LENGTH=233;; (*ITAG) Solyc05g054070.2.1 (e_value=6e-113) genomic_reference:SL2.40ch05 gene_region:63196547-63198365 transcript_region:SL2.40ch05:63196547..63198365- go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E "; GO:0003735,GO:0003723 NbS00031098g0009.1 protein AED:0.32 eAED:0.33 QI:140|0.75|0.8|1|0.75|0.8|5|0|270; (*GB) gi|37992753|gb|AAR06583.1| (e_value=9e-157) glycinamide ribonucleotide transformylase [Solanum tuberosum];; (*SWP) sp|P52423|PUR3_VIGUN (e_value=2e-101) Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata GN=PUR3 PE=2 SV=2;; (*TAIR) AT1G31220.1 (e_value=1e-89) | Symbols: | Formyl transferase | chr1:11157064-11158408 FORWARD LENGTH=292;; (*ITAG) Solyc11g012100.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5031094-5035795 transcript_region:SL2.40ch11:5031094..5035795+ go_terms:GO:0006189,GO:0008168,GO:0009058 functional_description:"Phosphoribosylglycinamide formyltransferase (AHRD V1 ***- D7KK96_ARALY); contains Interpro domain(s) IPR002376 Formyl transferase, N-terminal "; GO:0006189,GO:0008168,GO:0009058 NbS00031852g0005.1 protein AED:0.18 eAED:0.18 QI:88|1|1|1|0|0.33|3|518|80; (*GB) gi|224138200|ref|XP_002326543.1| (e_value=6e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2KIN1|DPM2_BOVIN (e_value=2e-22) Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3;; (*TAIR) AT1G74340.1 (e_value=1e-37) | Symbols: | dolichol phosphate-mannose biosynthesis regulatory protein-related | chr1:27948288-27948654 REVERSE LENGTH=80;; (*ITAG) Solyc06g066400.2.1 (e_value=5e-49) genomic_reference:SL2.40ch06 gene_region:38071407-38071975 transcript_region:SL2.40ch06:38071407..38071975- go_terms:GO:0005515,GO:0004582 functional_description:"Dolichol phosphate-mannose biosynthesis regulatory protein (AHRD V1 **** C3KJ11_ANOFI); contains Interpro domain(s) IPR009914 Dolichol phosphate-mannose biosynthesis regulatory "; GO:0005515,GO:0004582 NbS00031852g0006.1 protein AED:0.16 eAED:0.17 QI:0|1|0.85|1|1|1|7|454|273; (*GB) gi|76573305|gb|ABA46757.1| (e_value=3e-148) syntaxin-like protein [Solanum tuberosum];; (*SWP) sp|P93654|SYP22_ARATH (e_value=6e-117) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=4e-118) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc06g062360.2.1 (e_value=5e-154) genomic_reference:SL2.40ch06 gene_region:35717550-35722474 transcript_region:SL2.40ch06:35717550..35722474- go_terms:GO:0005484 functional_description:"Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00031852g0002.1 protein AED:0.29 eAED:0.29 QI:186|0.83|0.71|1|1|1|7|0|397; (*GB) gi|225424916|ref|XP_002270149.1| (e_value=2e-147) PREDICTED: ethylene-responsive transcription factor WRI1 [Vitis vinifera];; (*SWP) sp|Q6X5Y6|WRI1_ARATH (e_value=1e-87) Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1;; (*TAIR) AT3G54320.3 (e_value=1e-88) | Symbols: WRI1, WRI, ASML1 | Integrase-type DNA-binding superfamily protein | chr3:20114809-20118473 FORWARD LENGTH=430;; (*ITAG) Solyc06g066390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38069178-38070922 transcript_region:SL2.40ch06:38069178..38070922+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018763g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|129; (*ITAG) Solyc02g032980.1.1 (e_value=4e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:20287493-20287870 transcript_region:SL2.40ch02:20287493..20287870- functional_description:"Unknown Protein (AHRD V1)"; NbS00018763g0012.1 protein AED:0.27 eAED:0.27 QI:85|1|1|1|1|1|3|388|211; (*GB) gi|255582382|ref|XP_002531980.1| (e_value=2e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G36120.1 (e_value=1e-44) | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly, complex C (B6F) | chr5:14198679-14199203 REVERSE LENGTH=174;; (*ITAG) Solyc02g021000.2.1 (e_value=7e-70) genomic_reference:SL2.40ch02 gene_region:11977400-11978995 transcript_region:SL2.40ch02:11977400..11978995- go_terms:GO:0016020 functional_description:"YGGT family conserved hypothetical integral membrane protein (AHRD V1 *-*- A4CQQ7_SYNPV); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00018763g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|3|0|132 NbS00018763g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|147800021|emb|CAN65947.1| (e_value=7e-36) hypothetical protein VITISV_020727 [Vitis vinifera];; (*TAIR) AT3G58660.1 (e_value=8e-38) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=7e-68) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00018763g0013.1 protein AED:0.19 eAED:0.90 QI:0|0|0|1|1|1|3|0|196 NbS00025089g0010.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0|1|2|0|291; (*GB) gi|296082651|emb|CBI21656.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=6e-41) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=5e-42) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc01g088240.2.1 (e_value=9e-131) genomic_reference:SL2.40ch01 gene_region:74815324-74820785 transcript_region:SL2.40ch01:74815324..74820785+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M7Q4_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00012676g0011.1 protein AED:0.28 eAED:0.35 QI:0|0.25|0|0.8|0.25|0.2|5|0|249; (*GB) gi|82570159|gb|ABB83643.1| (e_value=2e-12) PIF-like orf1 [Daucus carota];; (*ITAG) Solyc10g049530.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00012676g0009.1 protein AED:0.12 eAED:0.12 QI:176|0.75|0.8|1|0.5|0.8|5|360|362; (*GB) gi|225452055|ref|XP_002283926.1| (e_value=3e-153) PREDICTED: mannose-6-phosphate isomerase [Vitis vinifera];; (*SWP) sp|O43014|MPI_SCHPO (e_value=2e-64) Mannose-6-phosphate isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmi40 PE=2 SV=1;; (*TAIR) AT1G67070.1 (e_value=5e-132) | Symbols: DIN9, PMI2 | Mannose-6-phosphate isomerase, type I | chr1:25042324-25044412 FORWARD LENGTH=441;; (*ITAG) Solyc06g060100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34396086-34401442 transcript_region:SL2.40ch06:34396086..34401442- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 1.2"; GO:0004476 NbS00012676g0008.1 protein AED:0.16 eAED:0.16 QI:364|0.88|0.9|1|0.11|0.3|10|231|261; (*GB) gi|356527494|ref|XP_003532344.1| (e_value=5e-147) PREDICTED: uncharacterized protein LOC100816181 [Glycine max];; (*TAIR) AT1G67060.1 (e_value=3e-143) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc03g034250.2.1 (e_value=2e-141) genomic_reference:SL2.40ch03 gene_region:10215436-10222829 transcript_region:SL2.40ch03:10215436..10222829- functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00021869g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0.2|1|1|1|5|0|265; (*GB) gi|225447324|ref|XP_002280216.1| (e_value=3e-114) PREDICTED: peroxidase 27 [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=2e-90) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=2e-91) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc05g046000.2.1 (e_value=4e-123) genomic_reference:SL2.40ch05 gene_region:57183616-57185801 transcript_region:SL2.40ch05:57183616..57185801+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00021869g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0.4|1|0|0|5|0|241; (*GB) gi|359485668|ref|XP_002274157.2| (e_value=3e-107) PREDICTED: peroxidase 27-like [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=4e-80) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=3e-81) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc05g046000.2.1 (e_value=5e-108) genomic_reference:SL2.40ch05 gene_region:57183616-57185801 transcript_region:SL2.40ch05:57183616..57185801+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00053420g0005.1 protein AED:0.25 eAED:0.25 QI:288|1|0.83|1|0.6|0.83|6|0|361; (*GB) gi|224083856|ref|XP_002307146.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28BT4|CALU_XENTR (e_value=1e-11) Calumenin OS=Xenopus tropicalis GN=calu PE=2 SV=1;; (*TAIR) AT5G08580.1 (e_value=1e-168) | Symbols: | Calcium-binding EF hand family protein | chr5:2780976-2782961 REVERSE LENGTH=391;; (*ITAG) Solyc00g008680.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8473134-8491476 transcript_region:SL2.40ch00:8473134..8491476+ go_terms:GO:0005509 functional_description:"Calcium binding protein-like (AHRD V1 *--- Q656S9_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00001664g0015.1 protein AED:0.03 eAED:0.06 QI:0|0.75|0.6|1|1|1|5|0|1310; (*GB) gi|147780567|emb|CAN75759.1| (e_value=0.0) hypothetical protein VITISV_017339 [Vitis vinifera];; (*SWP) sp|Q2TAW0|CNDG2_XENLA (e_value=4e-48) Condensin-2 complex subunit G2 OS=Xenopus laevis GN=ncapg2 PE=1 SV=1;; (*TAIR) AT1G64960.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:24129918-24134049 FORWARD LENGTH=1203;; (*ITAG) Solyc03g044020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11772149-11780960 transcript_region:SL2.40ch03:11772149..11780960- go_terms:GO:0005488 functional_description:"Condensin-2 complex subunit G2 (AHRD V1 *--- CNDG2_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00001664g0021.1 protein AED:0.25 eAED:0.25 QI:203|1|1|1|1|1|6|396|276; (*GB) gi|60279272|emb|CAA63968.1| (e_value=2e-169) pom30 [Solanum tuberosum];; (*SWP) sp|Q9FJX3|VDAC2_ARATH (e_value=7e-137) Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1;; (*TAIR) AT5G67500.1 (e_value=5e-138) | Symbols: VDAC2, ATVDAC2 | voltage dependent anion channel 2 | chr5:26935223-26937123 FORWARD LENGTH=276;; (*ITAG) Solyc03g044010.2.1 (e_value=4e-172) genomic_reference:SL2.40ch03 gene_region:11766864-11770767 transcript_region:SL2.40ch03:11766864..11770767- go_terms:GO:0008308 functional_description:"Mitochondrial porin (Voltage-dependent anion channel) outer membrane protein (AHRD V1 **** C4R1Z2_PICPG); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00001664g0018.1 protein AED:0.45 eAED:0.89 QI:0|0|0|1|0.4|0.5|6|0|263; (*GB) gi|350535106|ref|NP_001234432.1| (e_value=4e-72) N-acetyl-glutamate synthase [Solanum lycopersicum];; (*SWP) sp|A6VDY0|ARGA_PSEA7 (e_value=4e-28) Amino-acid acetyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=argA PE=3 SV=1;; (*TAIR) AT2G22910.1 (e_value=3e-61) | Symbols: NAGS1 | N-acetyl-l-glutamate synthase 1 | chr2:9749988-9752737 FORWARD LENGTH=609;; (*ITAG) Solyc03g043950.2.1 (e_value=8e-75) genomic_reference:SL2.40ch03 gene_region:11708167-11717704 transcript_region:SL2.40ch03:11708167..11717704+ go_terms:GO:0008652,GO:0008152,GO:0005737 functional_description:"Amino-acid N-acetyltransferase (AHRD V1 ***- D5W990_BURSC); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008652,GO:0008152,GO:0005737 NbS00001664g0017.1 protein AED:0.11 eAED:0.11 QI:21|1|0.8|1|1|1|5|263|165; (*GB) gi|371501274|dbj|BAL44264.1| (e_value=4e-118) ADP-ribosylation factor-like 8c [Nicotiana tabacum];; (*SWP) sp|Q6NZW8|AR8BA_DANRE (e_value=1e-85) ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1;; (*TAIR) AT3G49870.1 (e_value=1e-109) | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like A1C | chr3:18492674-18494021 REVERSE LENGTH=184;; (*ITAG) Solyc03g043960.2.1 (e_value=8e-119) genomic_reference:SL2.40ch03 gene_region:11718646-11726031 transcript_region:SL2.40ch03:11718646..11726031- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor-like protein (AHRD V1 ***- Q93Y31_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00001664g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|64420807|gb|AAY41426.1| (e_value=4e-61) putative L24 ribosomal protein [Ipomoea batatas];; (*SWP) sp|P51414|RL261_ARATH (e_value=8e-60) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2;; (*TAIR) AT3G49910.1 (e_value=6e-61) | Symbols: | Translation protein SH3-like family protein | chr3:18504311-18504751 FORWARD LENGTH=146;; (*ITAG) Solyc02g064670.1.1 (e_value=2e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30328162-30328602 transcript_region:SL2.40ch02:30328162..30328602+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L26-like 1 (AHRD V1 ***- B7TJ03_PIG); contains Interpro domain(s) IPR005756 Ribosomal protein L26, eukaryotic/archaeal "; GO:0003735,GO:0003723 NbC26199301g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|359491556|ref|XP_002280115.2| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100254191 [Vitis vinifera];; (*TAIR) AT4G24910.1 (e_value=2e-33) | Symbols: | Protein of unknown function (DUF579) | chr4:12817954-12818901 REVERSE LENGTH=315;; (*ITAG) Solyc03g110890.1.1 (e_value=6e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55669119-55670024 transcript_region:SL2.40ch03:55669119..55670024- go_terms:GO:0005515 functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV28_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; GO:0005515 NbS00002382g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.66|1|0.4|0.16|6|345|243; (*GB) gi|365818537|gb|AEX00357.1| (e_value=1e-119) IAA14 [Solanum lycopersicum];; (*SWP) sp|Q38832|IAA14_ARATH (e_value=1e-107) Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2;; (*TAIR) AT4G14550.1 (e_value=9e-109) | Symbols: IAA14, SLR | indole-3-acetic acid inducible 14 | chr4:8348521-8349923 REVERSE LENGTH=228;; (*ITAG) Solyc09g083290.2.1 (e_value=3e-122) genomic_reference:SL2.40ch09 gene_region:64364269-64367389 transcript_region:SL2.40ch09:64364269..64367389+ go_terms:GO:0005515 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515 NbS00031683g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|3|0|172; (*GB) gi|225458362|ref|XP_002281768.1| (e_value=4e-40) PREDICTED: anthocyanidin 3-O-glucosyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9M156|U72B1_ARATH (e_value=1e-16) UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana GN=UGT72B1 PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=1e-17) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc04g080010.2.1 (e_value=7e-61) genomic_reference:SL2.40ch04 gene_region:61901591-61903838 transcript_region:SL2.40ch04:61901591..61903838+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00046059g0003.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|0.66|0.5|4|0|153; (*GB) gi|90654968|gb|ABD96083.1| (e_value=2e-81) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT5G25360.2 (e_value=2e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc08g060860.2.1 (e_value=4e-78) genomic_reference:SL2.40ch08 gene_region:42837598-42842706 transcript_region:SL2.40ch08:42837598..42842706- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00026849g0003.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|90; (*ITAG) Solyc07g021740.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00054755g0003.1 protein AED:0.14 eAED:0.16 QI:0|0.75|0.6|1|1|1|5|467|445; (*GB) gi|147780878|emb|CAN68249.1| (e_value=0.0) hypothetical protein VITISV_020126 [Vitis vinifera];; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc02g065770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31490287-31494371 transcript_region:SL2.40ch02:31490287..31494371- functional_description:"COBRA-like protein 4 (AHRD V1 ***- B6SST3_MAIZE); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00059596g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.8|0.8|0.5|0.4|5|347|193; (*GB) gi|357507597|ref|XP_003624087.1| (e_value=8e-21) hypothetical protein MTR_7g079110 [Medicago truncatula];; (*TAIR) AT1G01490.2 (e_value=4e-21) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc01g095070.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:78197040-78199740 transcript_region:SL2.40ch01:78197040..78199740+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbC26085333g0001.1 protein AED:0.00 eAED:0.00 QI:53|-1|1|1|-1|1|1|0|318; (*GB) gi|62362434|gb|AAX81588.1| (e_value=0.0) nectarin IV [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=1e-58) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=7e-134) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g080010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71649995-71651531 transcript_region:SL2.40ch01:71649995..71651531- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00041824g0001.1 protein AED:0.31 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|255583480|ref|XP_002532498.1| (e_value=1e-22) ring finger protein, putative [Ricinus communis];; (*ITAG) Solyc01g088640.2.1 (e_value=4e-82) genomic_reference:SL2.40ch01 gene_region:75165095-75171511 transcript_region:SL2.40ch01:75165095..75171511- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00041824g0002.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|1|1|4|0|138; (*GB) gi|255583480|ref|XP_002532498.1| (e_value=3e-42) ring finger protein, putative [Ricinus communis];; (*TAIR) AT5G45290.2 (e_value=6e-30) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=546;; (*ITAG) Solyc01g088640.2.1 (e_value=2e-65) genomic_reference:SL2.40ch01 gene_region:75165095-75171511 transcript_region:SL2.40ch01:75165095..75171511- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00042609g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|171; (*GB) gi|224100431|ref|XP_002311873.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT1G59710.1 (e_value=1e-42) | Symbols: | Protein of unknown function (DUF569) | chr1:21938623-21939673 FORWARD LENGTH=300;; (*ITAG) Solyc05g006780.2.1 (e_value=3e-54) genomic_reference:SL2.40ch05 gene_region:1400482-1407165 transcript_region:SL2.40ch05:1400482..1407165+ functional_description:"NPH3 domain containing protein-like (AHRD V1 *-*- Q8GVF8_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00042609g0005.1 protein AED:0.57 eAED:0.57 QI:15|0|0|0.66|1|1|3|0|104 NbS00049015g0004.1 protein AED:0.43 eAED:0.44 QI:0|1|0.66|1|1|1|3|0|136; (*GB) gi|225463468|ref|XP_002276545.1| (e_value=8e-39) PREDICTED: 60S ribosomal protein L18a isoform 2 [Vitis vinifera];; (*SWP) sp|Q8L9S1|R18A1_ARATH (e_value=7e-29) 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2;; (*TAIR) AT1G53560.1 (e_value=5e-33) | Symbols: | Ribosomal protein L18ae family | chr1:19984908-19985960 REVERSE LENGTH=153;; (*ITAG) Solyc02g070630.2.1 (e_value=4e-59) genomic_reference:SL2.40ch02 gene_region:34903834-34907890 transcript_region:SL2.40ch02:34903834..34907890+ functional_description:"60S ribosomal protein L18A (AHRD V1 *-*- B6T286_MAIZE)"; NbS00059455g0001.1 protein AED:0.34 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|462; (*GB) gi|297739257|emb|CBI28908.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LR67|PPR9_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1;; (*TAIR) AT1G03560.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:890428-892410 REVERSE LENGTH=660;; (*ITAG) Solyc10g008510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2625491-2627626 transcript_region:SL2.40ch10:2625491..2627626+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCG2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00026448g0006.1 protein AED:0.29 eAED:0.37 QI:0|1|0.5|1|1|1|2|173|174; (*ITAG) Solyc03g096330.1.1 (e_value=5e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:51819199-51820287 transcript_region:SL2.40ch03:51819199..51820287- functional_description:"Unknown Protein (AHRD V1)"; NbS00026448g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|345; (*GB) gi|242058991|ref|XP_002458641.1| (e_value=8e-128) hypothetical protein SORBIDRAFT_03g037270 [Sorghum bicolor];; (*SWP) sp|Q02439|E13F_HORVU (e_value=2e-116) Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1;; (*TAIR) AT3G57260.1 (e_value=4e-100) | Symbols: BGL2, PR2, BG2, PR-2 | beta-1,3-glucanase 2 | chr3:21188709-21189822 REVERSE LENGTH=339;; (*ITAG) Solyc03g025650.1.1 (e_value=2e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7454210-7455317 transcript_region:SL2.40ch03:7454210..7455317+ go_terms:GO:0004338 functional_description:"Glucan-endo-1 3-beta-glucosidase (AHRD V1 **** Q9XFW9_CICAR); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0004338 NbS00026448g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|0|0|2|0|69; (*ITAG) Solyc09g072730.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60860048-60860654 transcript_region:SL2.40ch09:60860048..60860654- go_terms:GO:0008270 functional_description:"GRF zinc finger family protein expressed (AHRD V1 *-*- Q10CE1_ORYSJ); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00054846g0005.1 protein AED:0.35 eAED:0.36 QI:69|0.62|0.55|0.66|0.25|0.44|9|0|238; (*GB) gi|357517415|ref|XP_003628996.1| (e_value=1e-73) Carboxylic ester hydrolase [Medicago truncatula];; (*TAIR) AT4G19420.2 (e_value=3e-75) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc08g075020.2.1 (e_value=3e-75) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00054846g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|317106671|dbj|BAJ53174.1| (e_value=4e-106) JHL18I08.8 [Jatropha curcas];; (*SWP) sp|Q9LFB8|PTR5_ARATH (e_value=1e-55) Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1;; (*TAIR) AT5G01180.1 (e_value=8e-57) | Symbols: PTR5, ATPTR5 | peptide transporter 5 | chr5:61257-63240 REVERSE LENGTH=570;; (*ITAG) Solyc12g089230.1.1 (e_value=6e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62774318-62783414 transcript_region:SL2.40ch12:62774318..62783414+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_HUMAN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0016021 NbS00025803g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.71|1|1|1|7|0|421; (*GB) gi|225461508|ref|XP_002285119.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264152 isoform 1 [Vitis vinifera];; (*SWP) sp|Q58G01|LHWL3_ARATH (e_value=2e-16) Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1;; (*TAIR) AT5G53900.2 (e_value=4e-150) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr5:21881375-21883133 REVERSE LENGTH=377;; (*ITAG) Solyc07g062950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62809477-62812512 transcript_region:SL2.40ch07:62809477..62812512+ functional_description:"BHLH transcription factor (AHRD V1 *-*- Q9XIN0_ARATH)"; NbS00030915g0009.1 protein AED:0.40 eAED:0.40 QI:48|0.33|0.25|0.5|1|1|4|0|190; (*GB) gi|262192723|gb|ACY30431.1| (e_value=4e-41) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q15428|SF3A2_HUMAN (e_value=4e-19) Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2;; (*TAIR) AT2G32600.1 (e_value=4e-36) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:13833779-13835525 REVERSE LENGTH=277;; (*ITAG) Solyc09g008470.2.1 (e_value=9e-42) genomic_reference:SL2.40ch09 gene_region:1916797-1921294 transcript_region:SL2.40ch09:1916797..1921294+ go_terms:GO:0005634,GO:0008270 functional_description:"Splicing factor 3a subunit 2 (AHRD V1 ***- D8U746_VOLCA); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00030915g0011.1 protein AED:0.23 eAED:0.23 QI:0|1|0.9|1|0.66|0.6|10|0|913; (*GB) gi|225441143|ref|XP_002265706.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 9-like [Vitis vinifera];; (*SWP) sp|Q8L850|PI5K9_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana GN=PIP5K9 PE=1 SV=2;; (*TAIR) AT3G09920.3 (e_value=0.0) | Symbols: PIP5K9 | phosphatidyl inositol monophosphate 5 kinase | chr3:3040426-3043676 REVERSE LENGTH=815;; (*ITAG) Solyc09g008480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1921241-1929572 transcript_region:SL2.40ch09:1921241..1929572- go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase 9 (AHRD V1 ***- B6SXI7_MAIZE); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00030915g0010.1 protein AED:0.51 eAED:0.57 QI:0|0|0|1|0|0.5|2|0|127 NbS00023311g0013.1 protein AED:0.15 eAED:0.16 QI:118|0.25|0.2|1|0.5|0.6|5|0|558; (*GB) gi|19885|emb|CAA47324.1| (e_value=0.0) monosaccharid transporter [Nicotiana tabacum];; (*SWP) sp|Q41144|STC_RICCO (e_value=3e-177) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=5e-178) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc03g006650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1229172-1231694 transcript_region:SL2.40ch03:1229172..1231694+ go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 5 (AHRD V1 ***- GTR5_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00023311g0011.1 protein AED:0.21 eAED:0.21 QI:285|1|1|1|0.66|0.5|4|790|164; (*GB) gi|224078856|ref|XP_002305655.1| (e_value=1e-47) f-box family protein [Populus trichocarpa];; (*SWP) sp|O65416|SKI27_ARATH (e_value=6e-30) F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2;; (*TAIR) AT4G21510.1 (e_value=4e-31) | Symbols: | F-box family protein | chr4:11446193-11447025 REVERSE LENGTH=225;; (*ITAG) Solyc10g005480.2.1 (e_value=1e-76) genomic_reference:SL2.40ch10 gene_region:353240-354912 transcript_region:SL2.40ch10:353240..354912- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023311g0012.1 protein AED:0.36 eAED:0.52 QI:0|0|0|0.66|1|1|3|0|123 NbS00046085g0004.1 protein AED:0.05 eAED:0.06 QI:25|0|0|1|0|0|2|0|667; (*GB) gi|15418714|gb|AAG31017.1| (e_value=1e-102) tospovirus resistance protein E [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=3e-74) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=1e-41) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g009760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3955304-3957469 transcript_region:SL2.40ch05:3955304..3957469- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00000747g0005.1 protein AED:0.05 eAED:0.05 QI:197|1|1|1|1|1|6|343|395; (*GB) gi|334847978|gb|AEH04657.1| (e_value=0.0) fructose-bisphosphate aldolase [Camellia oleifera];; (*SWP) sp|Q9ZU52|ALFC3_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1;; (*TAIR) AT2G01140.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:95006-96491 REVERSE LENGTH=391;; (*ITAG) Solyc05g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2916906-2920232 transcript_region:SL2.40ch05:2916906..2920232- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B9SJY9_RICCO); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00000747g0008.1 protein AED:0.15 eAED:0.15 QI:379|0.91|0.92|1|0.66|0.69|13|276|433; (*GB) gi|356536262|ref|XP_003536658.1| (e_value=0.0) PREDICTED: phosphatidylserine synthase 2-like [Glycine max];; (*SWP) sp|Q9Z1X2|PTSS2_MOUSE (e_value=9e-91) Phosphatidylserine synthase 2 OS=Mus musculus GN=Ptdss2 PE=2 SV=2;; (*TAIR) AT1G15110.1 (e_value=0.0) | Symbols: | phosphatidyl serine synthase family protein | chr1:5199594-5201908 FORWARD LENGTH=425;; (*ITAG) Solyc05g008580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2893045-2899330 transcript_region:SL2.40ch05:2893045..2899330- go_terms:GO:0003882 functional_description:"Phosphatidylserine synthase 2 (AHRD V1 ***- B6TFK2_MAIZE); contains Interpro domain(s) IPR004277 Phosphatidyl serine synthase "; GO:0003882 NbS00008812g0106.1 protein AED:0.09 eAED:0.09 QI:334|0.5|0.66|1|0.5|0.33|3|102|236 NbS00008812g0105.1 protein AED:0.19 eAED:0.36 QI:58|0|0|1|0|0|2|0|92 NbS00008812g0206.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0|0.66|0.5|0.66|3|0|95 NbS00017929g0012.1 protein AED:0.20 eAED:0.22 QI:186|0.64|0.53|1|0.64|0.66|15|0|1685; (*GB) gi|138996990|dbj|BAF52857.1| (e_value=0.0) repressor of silencing 2b [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=5e-88) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT2G36490.1 (e_value=4e-89) | Symbols: DML1, ROS1 | demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393;; (*ITAG) Solyc10g083630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00017929g0011.1 protein AED:0.44 eAED:0.44 QI:0|0.83|0.85|1|1|1|7|293|236; (*GB) gi|138996985|dbj|BAF52855.1| (e_value=8e-137) repressor of silencing 1 [Nicotiana tabacum];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=2e-115) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=5e-117) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc10g083630.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00022378g0006.1 protein AED:0.41 eAED:0.52 QI:0|0.33|0.25|1|0|0|4|0|100 NbC25561909g0004.1 protein AED:0.00 eAED:0.00 QI:94|1|1|1|1|1|2|611|37 NbS00001638g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|1|1|5|0|124; (*GB) gi|22330746|ref|NP_565216.2| (e_value=7e-50) putative DNA repair protein RAD23-1 [Arabidopsis thaliana];; (*SWP) sp|Q84L33|RD23A_ARATH (e_value=2e-51) Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3;; (*TAIR) AT1G79650.2 (e_value=2e-52) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365;; (*ITAG) Solyc03g117780.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:60859826-60864595 transcript_region:SL2.40ch03:60859826..60864595- go_terms:GO:0031593 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593 NbS00012674g0009.1 protein AED:0.13 eAED:0.13 QI:52|1|1|1|0.83|0.71|7|327|280; (*GB) gi|118483161|gb|ABK93486.1| (e_value=1e-65) unknown [Populus trichocarpa];; (*TAIR) AT2G18465.1 (e_value=4e-29) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:8003223-8004742 REVERSE LENGTH=268;; (*ITAG) Solyc11g005400.1.1 (e_value=2e-142) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:310557-316867 transcript_region:SL2.40ch11:310557..316867- go_terms:GO:0031072 functional_description:"DnaJ domain containing protein (AHRD V1 ***- B6U3I3_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbC26298068g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0.5|2|0|157; (*GB) gi|255586620|ref|XP_002533942.1| (e_value=1e-68) protein with unknown function [Ricinus communis];; (*TAIR) AT1G31040.1 (e_value=6e-45) | Symbols: | PLATZ transcription factor family protein | chr1:11069793-11072182 REVERSE LENGTH=243;; (*ITAG) Solyc02g068510.1.1 (e_value=5e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33042372-33045458 transcript_region:SL2.40ch02:33042372..33045458- functional_description:"Zinc-binding protein (AHRD V1 **-- Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00042080g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|92 NbS00010402g0001.1 protein AED:0.03 eAED:0.03 QI:315|0.5|0.66|1|0|0.66|3|354|209; (*GB) gi|226872|prf||1609235A (e_value=3e-129) chlorophyll a/b binding protein;; (*SWP) sp|P27522|CB13_SOLLC (e_value=5e-130) Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1;; (*TAIR) AT1G61520.3 (e_value=7e-131) | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700152-22701149 FORWARD LENGTH=273;; (*ITAG) Solyc12g011280.1.1 (e_value=4e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4139454-4140793 transcript_region:SL2.40ch12:4139454..4140793- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00010402g0006.1 protein AED:0.06 eAED:0.06 QI:210|1|1|1|0.66|0.57|7|290|211; (*GB) gi|356555789|ref|XP_003546212.1| (e_value=1e-132) PREDICTED: ras-related protein RABB1c-like [Glycine max];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=9e-134) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=7e-135) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc12g011130.1.1 (e_value=5e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3971227-3974056 transcript_region:SL2.40ch12:3971227..3974056- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00031704g0020.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|155; (*ITAG) Solyc05g041400.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:50614662-50615917 transcript_region:SL2.40ch05:50614662..50615917- functional_description:"Unknown Protein (AHRD V1)"; NbS00031704g0004.1 protein AED:0.44 eAED:0.49 QI:0|0|0|0.85|1|1|7|0|459; (*GB) gi|57013961|ref|YP_173433.1| (e_value=3e-60) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=1e-53) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=1e-54) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc02g076720.2.1 (e_value=9e-57) genomic_reference:SL2.40ch02 gene_region:36422621-36428170 transcript_region:SL2.40ch02:36422621..36428170- go_terms:GO:0004642 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 **** A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0004642 NbS00031704g0003.1 protein AED:0.55 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|183; (*GB) gi|57013931|ref|YP_173404.1| (e_value=2e-20) ATP synthase F0 subunit 9 [Nicotiana tabacum];; (*SWP) sp|Q07060|ATP9_PETSP (e_value=8e-21) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=8e-17) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00031704g0005.1 protein AED:0.99 eAED:0.99 QI:0|-1|0|1|-1|1|1|0|71 NbS00032877g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|195; (*ITAG) Solyc11g017390.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:8315512-8315970 transcript_region:SL2.40ch11:8315512..8315970+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032877g0007.1 protein AED:0.53 eAED:0.53 QI:48|1|0.5|1|0|0|2|23|29 NbS00037285g0006.1 protein AED:0.24 eAED:0.24 QI:13|0.14|0.12|1|0.57|0.75|8|0|1274; (*GB) gi|225446273|ref|XP_002266689.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Vitis vinifera];; (*SWP) sp|O64705|PP184_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2;; (*TAIR) AT2G34400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:14516226-14518186 FORWARD LENGTH=621;; (*ITAG) Solyc07g009220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4253377-4256772 transcript_region:SL2.40ch07:4253377..4256772- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LH03_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00037285g0004.1 protein AED:0.46 eAED:0.55 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|225446273|ref|XP_002266689.1| (e_value=3e-77) PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Vitis vinifera];; (*SWP) sp|O64705|PP184_ARATH (e_value=2e-49) Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2;; (*TAIR) AT2G34400.1 (e_value=2e-50) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:14516226-14518186 FORWARD LENGTH=621;; (*ITAG) Solyc07g009220.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4253377-4256772 transcript_region:SL2.40ch07:4253377..4256772- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LH03_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00031626g0010.1 protein AED:0.02 eAED:0.02 QI:73|1|1|1|0.5|0.33|3|161|265; (*GB) gi|225440815|ref|XP_002276192.1| (e_value=1e-83) PREDICTED: NAC domain-containing protein 90 [Vitis vinifera];; (*SWP) sp|Q9FMR3|NAC90_ARATH (e_value=3e-72) NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1;; (*TAIR) AT5G22380.1 (e_value=2e-73) | Symbols: anac090, NAC090 | NAC domain containing protein 90 | chr5:7408924-7410038 REVERSE LENGTH=235;; (*ITAG) Solyc09g010160.1.1 (e_value=3e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3540687-3545497 transcript_region:SL2.40ch09:3540687..3545497+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IIS2_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00031626g0009.1 protein AED:0.36 eAED:0.45 QI:0|0|0.33|1|1|0.66|3|308|107; (*GB) gi|388502212|gb|AFK39172.1| (e_value=3e-21) unknown [Lotus japonicus];; (*TAIR) AT3G11530.2 (e_value=1e-23) | Symbols: | Vacuolar protein sorting 55 (VPS55) family protein | chr3:3628801-3629885 REVERSE LENGTH=113;; (*ITAG) Solyc09g010170.2.1 (e_value=5e-28) genomic_reference:SL2.40ch09 gene_region:3548667-3552545 transcript_region:SL2.40ch09:3548667..3552545- functional_description:"Vacuolar protein sorting 55 containing protein (AHRD V1 ***- A6N1U6_ORYSI); contains Interpro domain(s) IPR007262 Vacuolar protein sorting 55 "; NbS00038190g0007.1 protein AED:0.36 eAED:0.36 QI:0|1|0.83|1|0.81|0.83|12|0|430; (*GB) gi|225450085|ref|XP_002277955.1| (e_value=0.0) PREDICTED: tRNA-dihydrouridine synthase A-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8CWK7|DUSA_VIBVU (e_value=1e-78) tRNA-dihydrouridine synthase A OS=Vibrio vulnificus GN=dusA PE=3 SV=2;; (*TAIR) AT3G63510.1 (e_value=0.0) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr3:23450542-23452682 FORWARD LENGTH=419;; (*ITAG) Solyc01g087290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73981707-73989145 transcript_region:SL2.40ch01:73981707..73989145- go_terms:GO:0008152,GO:0055114 functional_description:"TRNA-dihydrouridine synthase (AHRD V1 ***- A2VQL7_9BURK); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0008152,GO:0055114 NbS00020104g0008.1 protein AED:0.06 eAED:0.07 QI:0|0.75|0.4|0.8|1|1|5|0|627; (*GB) gi|359490578|ref|XP_002275623.2| (e_value=0.0) PREDICTED: S-type anion channel SLAH3-like [Vitis vinifera];; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=0.0) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=0.0) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc06g036440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22680542-22683163 transcript_region:SL2.40ch06:22680542..22683163+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00035795g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|255566616|ref|XP_002524292.1| (e_value=5e-122) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6DYE5|U496K_ARATH (e_value=1e-29) UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2;; (*TAIR) AT1G20180.1 (e_value=7e-31) | Symbols: | Protein of unknown function (DUF677) | chr1:6996354-6997779 FORWARD LENGTH=390;; (*ITAG) Solyc12g056570.1.1 (e_value=5e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47872452-47873507 transcript_region:SL2.40ch12:47872452..47873507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00021097g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|372; (*GB) gi|520916|emb|CAA81748.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q42881|1A13_SOLLC (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=0.0) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc02g091990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47786604-47788405 transcript_region:SL2.40ch02:47786604..47788405- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00044117g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|1|0.33|0|4|0|211; (*GB) gi|1498334|gb|AAB40079.1| (e_value=2e-95) actin, partial [Glycine max];; (*SWP) sp|P81228|ACT5_SOLTU (e_value=2e-94) Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=9e-95) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc10g080500.1.1 (e_value=8e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61081201-61082937 transcript_region:SL2.40ch10:61081201..61082937+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00044117g0004.1 protein AED:0.53 eAED:0.83 QI:0|0|0|0.66|1|1|3|0|73 NbS00009400g0001.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|886; (*GB) gi|225458603|ref|XP_002282770.1| (e_value=0.0) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|O48724|WEB1_ARATH (e_value=0.0) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=0.0) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc12g088830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62489990-62493033 transcript_region:SL2.40ch12:62489990..62493033- functional_description:"Myosin heavy chain-like (AHRD V1 **-- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00009400g0006.1 protein AED:0.14 eAED:0.14 QI:469|0.77|0.9|1|1|1|10|262|467; (*GB) gi|356552208|ref|XP_003544461.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max];; (*SWP) sp|Q9Y2H1|ST38L_HUMAN (e_value=2e-139) Serine/threonine-protein kinase 38-like OS=Homo sapiens GN=STK38L PE=1 SV=3;; (*TAIR) AT5G09890.2 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:3085810-3088842 REVERSE LENGTH=516;; (*ITAG) Solyc12g088820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62485341-62489176 transcript_region:SL2.40ch12:62485341..62489176+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024027g0003.1 protein AED:0.21 eAED:0.21 QI:112|1|1|1|1|0.75|4|317|218; (*GB) gi|298204564|emb|CBI23839.3| (e_value=4e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49755|TMEDA_HUMAN (e_value=9e-31) Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2;; (*TAIR) AT1G09580.1 (e_value=1e-91) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc01g104220.2.1 (e_value=2e-115) genomic_reference:SL2.40ch01 gene_region:84431022-84435420 transcript_region:SL2.40ch01:84431022..84435420+ go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00005733g0012.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|219; (*GB) gi|225455533|ref|XP_002266318.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera];; (*TAIR) AT5G62280.1 (e_value=1e-40) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc01g091250.2.1 (e_value=4e-115) genomic_reference:SL2.40ch01 gene_region:76677735-76678734 transcript_region:SL2.40ch01:76677735..76678734- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00005733g0015.1 protein AED:0.10 eAED:0.10 QI:279|1|1|1|0.85|0.75|8|428|309; (*GB) gi|356506038|ref|XP_003521795.1| (e_value=9e-151) PREDICTED: probable S-acyltransferase At3g60800-like [Glycine max];; (*SWP) sp|Q8VYP5|ZDH14_ARATH (e_value=2e-144) Probable S-acyltransferase At3g60800 OS=Arabidopsis thaliana GN=At3g60800 PE=2 SV=1;; (*TAIR) AT3G60800.1 (e_value=1e-145) | Symbols: | DHHC-type zinc finger family protein | chr3:22467486-22469273 REVERSE LENGTH=307;; (*ITAG) Solyc01g091280.2.1 (e_value=2e-174) genomic_reference:SL2.40ch01 gene_region:76690149-76696033 transcript_region:SL2.40ch01:76690149..76696033- go_terms:GO:0016409 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 **** A8N304_COPC7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00005733g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.25|0.5|1|1|4|490|138; (*GB) gi|224074713|ref|XP_002304437.1| (e_value=2e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g091260.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:76682184-76686338 transcript_region:SL2.40ch01:76682184..76686338- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00005733g0004.1 protein AED:0.29 eAED:0.29 QI:276|1|1|1|0.57|0.5|8|126|306; (*GB) gi|255541296|ref|XP_002511712.1| (e_value=2e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45380.1 (e_value=2e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr2:18699588-18703093 REVERSE LENGTH=494;; (*ITAG) Solyc01g091270.2.1 (e_value=7e-106) genomic_reference:SL2.40ch01 gene_region:76686901-76689861 transcript_region:SL2.40ch01:76686901..76689861- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 ***- B9DGW8_ARATH)"; NbS00005733g0010.1 protein AED:0.60 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|202; (*ITAG) Solyc01g091260.2.1 (e_value=3e-15) genomic_reference:SL2.40ch01 gene_region:76682184-76686338 transcript_region:SL2.40ch01:76682184..76686338- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00020131g0003.1 protein AED:0.18 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|128; (*GB) gi|255544630|ref|XP_002513376.1| (e_value=7e-40) Peroxidase 57 precursor, putative [Ricinus communis];; (*SWP) sp|O81755|PER48_ARATH (e_value=1e-22) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT2G38380.1 (e_value=8e-20) | Symbols: | Peroxidase superfamily protein | chr2:16076443-16078314 FORWARD LENGTH=349;; (*ITAG) Solyc02g085930.2.1 (e_value=5e-61) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00059342g0003.1 protein AED:0.30 eAED:0.30 QI:212|0.90|0.91|1|0.81|0.83|12|494|709; (*GB) gi|42565803|ref|NP_190612.3| (e_value=2e-95) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G50430.1 (e_value=3e-98) | Symbols: | unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18713718-18716759 FORWARD LENGTH=642;; (*ITAG) Solyc02g090260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46441840-46446509 transcript_region:SL2.40ch02:46441840..46446509+ functional_description:"cDNA clone J20 full insert sequence (AHRD V1 ***- B7ESH6_ORYSJ)"; NbS00028900g0005.1 protein AED:0.00 eAED:0.00 QI:60|1|1|1|1|1|2|664|201; (*GB) gi|20334373|gb|AAM19207.1|AF493232_1 (e_value=8e-99) cysteine protease [Solanum pimpinellifolium];; (*SWP) sp|O23791|BROM1_ANACO (e_value=6e-46) Fruit bromelain OS=Ananas comosus PE=1 SV=1;; (*TAIR) AT2G34080.1 (e_value=3e-57) | Symbols: | Cysteine proteinases superfamily protein | chr2:14393431-14394777 REVERSE LENGTH=345;; (*ITAG) Solyc02g076980.2.1 (e_value=3e-99) genomic_reference:SL2.40ch02 gene_region:36644114-36645492 transcript_region:SL2.40ch02:36644114..36645492+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0004197 NbS00028900g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|50355613|dbj|BAD29955.1| (e_value=3e-32) cysteine protease [Daucus carota];; (*SWP) sp|Q9FGR9|CEP1_ARATH (e_value=2e-26) KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1;; (*TAIR) AT5G50260.1 (e_value=1e-27) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc02g076970.1.1 (e_value=8e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36639422-36640534 transcript_region:SL2.40ch02:36639422..36640534+ go_terms:GO:0030984,GO:0032403,GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0030984,GO:0032403,GO:0004197 NbS00004970g0007.1 protein AED:0.17 eAED:0.20 QI:0|0|0|0.5|0.33|0.75|4|0|255; (*GB) gi|256542473|gb|ACU82899.1| (e_value=2e-77) nucleotide binding site-leucine rich repeat protein, partial [Solanum lycopersicum];; (*SWP) sp|Q8RXS5|DRL40_ARATH (e_value=6e-27) Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2;; (*TAIR) AT5G63020.1 (e_value=5e-28) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:25283252-25286002 REVERSE LENGTH=888;; (*ITAG) Solyc10g076440.1.1 (e_value=8e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58743943-58746960 transcript_region:SL2.40ch10:58743943..58746960+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004970g0006.1 protein AED:0.26 eAED:0.26 QI:299|1|1|1|1|1|3|183|170; (*GB) gi|18398279|ref|NP_566336.1| (e_value=9e-104) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=5e-96) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT3G08890.2 (e_value=2e-106) | Symbols: | Protein of unknown function, DUF538 | chr3:2706701-2707775 FORWARD LENGTH=170;; (*ITAG) Solyc10g076420.1.1 (e_value=8e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58725353-58728900 transcript_region:SL2.40ch10:58725353..58728900+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00013547g0003.1 protein AED:0.00 eAED:0.00 QI:367|1|1|1|0|0|3|49|32 NbS00003818g0003.1 protein AED:0.00 eAED:0.00 QI:307|1|1|1|1|1|2|362|398; (*GB) gi|225467702|ref|XP_002272171.1| (e_value=5e-127) PREDICTED: uncharacterized protein LOC100251038 isoform 1 [Vitis vinifera];; (*TAIR) AT3G07310.1 (e_value=2e-116) | Symbols: | Protein of unknown function (DUF760) | chr3:2328057-2329677 REVERSE LENGTH=368;; (*ITAG) Solyc09g057580.2.1 (e_value=4e-115) genomic_reference:SL2.40ch09 gene_region:45436595-45442905 transcript_region:SL2.40ch09:45436595..45442905- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q010E1_OSTTA); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00044764g0004.1 protein AED:0.17 eAED:0.17 QI:174|0.86|0.87|1|0.65|0.75|24|0|1039; (*GB) gi|359485959|ref|XP_002267672.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera];; (*SWP) sp|C0LGH2|Y1561_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2;; (*TAIR) AT1G56130.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:20994931-21000887 REVERSE LENGTH=1032;; (*ITAG) Solyc07g066550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbC26045525g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=3e-82) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=1e-45) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00006006g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|0.66|1|1|3|0|309; (*GB) gi|255558456|ref|XP_002520253.1| (e_value=1e-140) monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LPL3|YUC11_ARATH (e_value=1e-126) Putative flavin-containing monooxygenase YUCCA11 OS=Arabidopsis thaliana GN=YUC11 PE=3 SV=1;; (*TAIR) AT1G21430.1 (e_value=1e-127) | Symbols: YUC11 | Flavin-binding monooxygenase family protein | chr1:7500845-7502186 FORWARD LENGTH=391;; (*ITAG) Solyc09g091870.1.1 (e_value=8e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66432818-66436003 transcript_region:SL2.40ch09:66432818..66436003- go_terms:GO:0055114 functional_description:"Monooxygenase (AHRD V1 ***- B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0055114 NbS00006006g0011.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|411; (*GB) gi|224085053|ref|XP_002307472.1| (e_value=9e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31130.1 (e_value=5e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:11114963-11115928 REVERSE LENGTH=321;; (*ITAG) Solyc04g064530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54804949-54805971 transcript_region:SL2.40ch04:54804949..54805971- functional_description:"Unknown Protein (AHRD V1)"; NbS00053762g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.88|0.88|1|0.94|0.88|18|0|718; (*GB) gi|456309|dbj|BAA05648.1| (e_value=0.0) protein kinase [Nicotiana tabacum];; (*SWP) sp|O22042|M3K3_ARATH (e_value=0.0) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3 PE=1 SV=1;; (*TAIR) AT3G06030.1 (e_value=0.0) | Symbols: ANP3, MAPKKK12, NP3 | NPK1-related protein kinase 3 | chr3:1818895-1822705 REVERSE LENGTH=651;; (*ITAG) Solyc01g079750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71407076-71414432 transcript_region:SL2.40ch01:71407076..71414432- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0004711 NbS00054166g0006.1 protein AED:0.18 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|302; (*GB) gi|224104298|ref|XP_002313387.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=4e-50) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=4e-63) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00054166g0001.1 protein AED:0.15 eAED:0.15 QI:1348|0.75|0.77|1|0.75|0.66|9|0|213; (*GB) gi|255569289|ref|XP_002525612.1| (e_value=9e-98) GDP-mannose transporter, putative [Ricinus communis];; (*SWP) sp|Q84L09|GONS2_ARATH (e_value=2e-90) GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1;; (*TAIR) AT1G07290.1 (e_value=1e-91) | Symbols: GONST2 | golgi nucleotide sugar transporter 2 | chr1:2242284-2244428 REVERSE LENGTH=375;; (*ITAG) Solyc06g076830.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44111877-44117724 transcript_region:SL2.40ch06:44111877..44117724+ go_terms:GO:0005458 functional_description:"GDP-mannose transporter (AHRD V1 **** C1H9D4_PARBA); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005458 NbS00054166g0008.1 protein AED:0.40 eAED:0.56 QI:0|0|0|1|0|0|2|0|100; (*ITAG) Solyc06g076840.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00036207g0006.1 protein AED:0.15 eAED:0.16 QI:380|0.72|0.76|0.96|0.88|0.96|26|437|1514; (*GB) gi|125535486|gb|EAY81974.1| (e_value=0.0) hypothetical protein OsI_37152 [Oryza sativa Indica Group];; (*SWP) sp|Q0WNJ6|CLAH1_ARATH (e_value=0.0) Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1;; (*TAIR) AT3G11130.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705;; (*ITAG) Solyc03g096000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51242345-51256561 transcript_region:SL2.40ch03:51242345..51256561- go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbC25044800g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc01g099360.2.1 (e_value=3e-50) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00027681g0018.1 protein AED:0.04 eAED:0.04 QI:346|1|0.83|1|1|1|6|0|241; (*GB) gi|325516266|gb|ADZ24711.1| (e_value=8e-155) phytol kinase [Solanum pennellii];; (*SWP) sp|Q2N2K0|PHYK3_SOYBN (e_value=2e-119) Probable phytol kinase 3, chloroplastic OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G58560.1 (e_value=8e-118) | Symbols: | Phosphatidate cytidylyltransferase family protein | chr5:23670513-23672570 FORWARD LENGTH=307;; (*ITAG) Solyc09g018510.2.1 (e_value=1e-156) genomic_reference:SL2.40ch09 gene_region:15118957-15122657 transcript_region:SL2.40ch09:15118957..15122657+ go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase family protein expressed (AHRD V1 **-* Q2QYV3_ORYSJ); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00027681g0021.1 protein AED:0.22 eAED:0.25 QI:0|0.33|0.28|1|0.5|0.42|7|0|987; (*GB) gi|225434510|ref|XP_002278414.1| (e_value=0.0) PREDICTED: ethylene-overproduction protein 1-like [Vitis vinifera];; (*SWP) sp|O65020|ETO1_ARATH (e_value=0.0) Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2;; (*TAIR) AT3G51770.1 (e_value=0.0) | Symbols: ETO1, ATEOL1 | tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203974 REVERSE LENGTH=951;; (*ITAG) Solyc09g055310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:34651699-34661342 transcript_region:SL2.40ch09:34651699..34661342+ go_terms:GO:0005515 functional_description:"Ethylene-overproduction protein 1 (AHRD V1 **-- D7LTY2_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00027681g0023.1 protein AED:0.09 eAED:0.09 QI:283|0.72|0.66|1|0.63|0.66|12|609|1193; (*GB) gi|359478537|ref|XP_002278840.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243375 [Vitis vinifera];; (*SWP) sp|O97159|CHDM_DROME (e_value=6e-11) Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2;; (*TAIR) AT5G58610.1 (e_value=4e-138) | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065;; (*ITAG) Solyc09g031580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:21995732-22004663 transcript_region:SL2.40ch09:21995732..22004663+ go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--* Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00002245g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|4|36|397; (*GB) gi|342672241|gb|AEL30893.1| (e_value=0.0) STENOFOLIA 1 [Nicotiana sylvestris];; (*SWP) sp|Q6X7K0|WOX1_ARATH (e_value=5e-59) WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2;; (*TAIR) AT3G18010.1 (e_value=4e-60) | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:6161155-6163183 REVERSE LENGTH=350;; (*ITAG) Solyc03g118770.2.1 (e_value=6e-157) genomic_reference:SL2.40ch03 gene_region:61649126-61651488 transcript_region:SL2.40ch03:61649126..61651488- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00053920g0003.1 protein AED:0.12 eAED:0.12 QI:357|1|0.83|1|0.81|0.91|12|0|636; (*GB) gi|225448751|ref|XP_002281489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera];; (*SWP) sp|Q9Z1A9|TBCD8_MOUSE (e_value=1e-39) TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2;; (*TAIR) AT3G55020.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:20389278-20394713 REVERSE LENGTH=777;; (*ITAG) Solyc04g009560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2961142-2970580 transcript_region:SL2.40ch04:2961142..2970580- go_terms:GO:0005622 functional_description:"TBC1 domain family member 8B (AHRD V1 *--- B9A6K5_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00037052g0003.1 protein AED:0.05 eAED:0.05 QI:320|1|1|1|0.66|0.5|4|231|803; (*GB) gi|224075052|ref|XP_002304537.1| (e_value=0.0) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=0.0) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.1 (e_value=0.0) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16641146 REVERSE LENGTH=810;; (*ITAG) Solyc08g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61916642-61920862 transcript_region:SL2.40ch08:61916642..61920862- go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00005487g0006.1 protein AED:0.28 eAED:0.28 QI:20|0.8|0.83|1|0.6|0.83|6|0|591; (*GB) gi|255586744|ref|XP_002533992.1| (e_value=2e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G44650.1 (e_value=4e-60) | Symbols: CEST, AtCEST | Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. | chr5:18013396-18015292 FORWARD LENGTH=280;; (*ITAG) Solyc10g005190.1.1 (e_value=1e-113) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:146046-147059 transcript_region:SL2.40ch10:146046..147059+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013870g0004.1 protein AED:0.41 eAED:0.41 QI:349|0.5|0.6|0.8|0.5|0.6|5|0|103; (*GB) gi|356532351|ref|XP_003534737.1| (e_value=4e-39) PREDICTED: transcriptional adapter ADA2b-like [Glycine max];; (*SWP) sp|Q9ATB4|TAD2B_ARATH (e_value=1e-34) Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1;; (*TAIR) AT4G16420.1 (e_value=9e-36) | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=487;; (*ITAG) Solyc05g054200.2.1 (e_value=5e-49) genomic_reference:SL2.40ch05 gene_region:63300322-63307891 transcript_region:SL2.40ch05:63300322..63307891+ go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B3LFL4_YEAS1); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00017365g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0.6|1|1|1|5|0|481; (*GB) gi|255561431|ref|XP_002521726.1| (e_value=0.0) srpk, putative [Ricinus communis];; (*SWP) sp|P36616|DSK1_SCHPO (e_value=1e-98) Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=2 SV=2;; (*TAIR) AT4G35500.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:16857475-16859407 FORWARD LENGTH=438;; (*ITAG) Solyc00g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6708738-6712713 transcript_region:SL2.40ch00:6708738..6712713- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U105_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00026310g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|0.8|1|1|5|0|425; (*GB) gi|255586487|ref|XP_002533885.1| (e_value=0.0) Cell division protein kinase 7, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=2e-141) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.3 (e_value=1e-142) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=572;; (*ITAG) Solyc04g051460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49720274-49725672 transcript_region:SL2.40ch04:49720274..49725672+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** D3PJA7_9MAXI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00028276g0006.1 protein AED:0.34 eAED:0.35 QI:0|0|0|0.75|0|0|4|0|178; (*GB) gi|147833163|emb|CAN77592.1| (e_value=5e-21) hypothetical protein VITISV_020474 [Vitis vinifera];; (*ITAG) Solyc09g090370.2.1 (e_value=3e-36) genomic_reference:SL2.40ch09 gene_region:65243091-65247723 transcript_region:SL2.40ch09:65243091..65247723+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00036261g0009.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|266; (*GB) gi|296087304|emb|CBI33678.3| (e_value=4e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=3e-70) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=4e-69) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=6e-68) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00036261g0002.1 protein AED:0.27 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|359488391|ref|XP_002279895.2| (e_value=3e-113) PREDICTED: sugar carrier protein C, partial [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=1e-95) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT4G21480.1 (e_value=4e-96) | Symbols: STP12 | sugar transporter protein 12 | chr4:11433320-11435284 REVERSE LENGTH=502;; (*ITAG) Solyc03g078600.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:44775407-44776871 transcript_region:SL2.40ch03:44775407..44776871+ go_terms:GO:0005358,GO:0008506 functional_description:"High-affinity glucose transporter (AHRD V1 **** HGT1_CANAL); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358,GO:0008506 NbS00036261g0010.1 protein AED:0.11 eAED:0.11 QI:57|1|0.75|1|1|0.75|4|209|285; (*GB) gi|255572311|ref|XP_002527094.1| (e_value=1e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71760.2 (e_value=6e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:26989414-26990499 FORWARD LENGTH=276;; (*ITAG) Solyc00g009050.1.1 (e_value=8e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:8766371-8768154 transcript_region:SL2.40ch00:8766371..8768154- functional_description:"UPF0544 protein C5orf45 (AHRD V1 ***- CE045_HUMAN)"; NbS00015652g0016.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|324; (*GB) gi|296082225|emb|CBI21230.3| (e_value=2e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FL79|EXP23_ARATH (e_value=3e-95) Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=3;; (*TAIR) AT5G39280.1 (e_value=3e-96) | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17, EXPA23 | expansin A23 | chr5:15730713-15731706 REVERSE LENGTH=259;; (*ITAG) Solyc03g115270.1.1 (e_value=4e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59114292-59115725 transcript_region:SL2.40ch03:59114292..59115725- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- B7TYQ2_9GENT); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00015652g0013.1 protein AED:0.11 eAED:0.11 QI:157|1|1|1|0.84|0.71|14|134|623; (*GB) gi|225457192|ref|XP_002283959.1| (e_value=0.0) PREDICTED: replication protein A 70 kDa DNA-binding subunit isoform 1 [Vitis vinifera];; (*SWP) sp|P27694|RFA1_HUMAN (e_value=2e-91) Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2;; (*TAIR) AT5G08020.1 (e_value=0.0) | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604;; (*ITAG) Solyc03g115050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58937751-58941209 transcript_region:SL2.40ch03:58937751..58941209- go_terms:GO:0005515,GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 **** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0005515,GO:0003697 NbS00015652g0011.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|795; (*GB) gi|225436984|ref|XP_002272235.1| (e_value=1e-170) PREDICTED: basic 7S globulin [Vitis vinifera];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=1e-78) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=3e-138) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc03g115040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58935701-58937532 transcript_region:SL2.40ch03:58935701..58937532+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00004240g0011.1 protein AED:0.19 eAED:0.19 QI:73|1|1|1|0.66|0.5|4|658|133; (*GB) gi|255585616|ref|XP_002533495.1| (e_value=2e-84) 60S ribosomal protein L32, putative [Ricinus communis];; (*SWP) sp|P49211|RL321_ARATH (e_value=2e-79) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=1e-80) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=1e-82) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "; GO:0003735,GO:0005515 NbS00004240g0015.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.25|1|1|1|4|0|123; (*GB) gi|255557447|ref|XP_002519754.1| (e_value=2e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29520.1 (e_value=1e-40) | Symbols: | AWPM-19-like family protein | chr1:10323735-10324525 FORWARD LENGTH=158;; (*ITAG) Solyc02g071310.2.1 (e_value=9e-53) genomic_reference:SL2.40ch02 gene_region:35368618-35369907 transcript_region:SL2.40ch02:35368618..35369907+ functional_description:"Plasma membrane associated protein (AHRD V1 ***- B4FLA8_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00004240g0005.1 protein AED:0.22 eAED:0.22 QI:279|1|0.75|1|0.66|0.75|4|556|381; (*ITAG) Solyc02g071320.2.1 (e_value=6e-113) genomic_reference:SL2.40ch02 gene_region:35370359-35375355 transcript_region:SL2.40ch02:35370359..35375355- functional_description:"Unknown Protein (AHRD V1)"; NbS00004240g0003.1 protein AED:0.15 eAED:0.23 QI:0|0|0|1|1|1|3|0|755; (*GB) gi|359483597|ref|XP_002272690.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FHF9|PP419_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1;; (*TAIR) AT5G46460.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:18840305-18842398 FORWARD LENGTH=697;; (*ITAG) Solyc02g071300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35364145-35366211 transcript_region:SL2.40ch02:35364145..35366211- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013107g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|243; (*ITAG) Solyc05g005220.1.1 (e_value=8e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:187568-188344 transcript_region:SL2.40ch05:187568..188344- functional_description:"Unknown Protein (AHRD V1)"; NbS00013107g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.71|1|0.83|0.85|7|0|480; (*GB) gi|225425577|ref|XP_002266600.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=7e-101) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G60590.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:22314426-22316867 REVERSE LENGTH=540;; (*ITAG) Solyc05g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:159155-162491 transcript_region:SL2.40ch05:159155..162491+ go_terms:GO:0005975 functional_description:"Polygalacturonase 2 (AHRD V1 ***- A8D0T9_ONCHC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00044688g0003.1 protein AED:0.12 eAED:0.12 QI:200|1|0.9|1|0.88|0.9|10|0|915; (*GB) gi|359495422|ref|XP_003634989.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Vitis vinifera];; (*SWP) sp|Q9FPS4|UBP23_ARATH (e_value=7e-175) Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2;; (*TAIR) AT5G57990.1 (e_value=6e-176) | Symbols: UBP23 | ubiquitin-specific protease 23 | chr5:23470218-23473997 REVERSE LENGTH=859;; (*ITAG) Solyc07g005530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:421123-429027 transcript_region:SL2.40ch07:421123..429027+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- D7MNY5_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00061583g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|464; (*GB) gi|224104497|ref|XP_002313455.1| (e_value=0.0) beta-ketoacyl-coa synthase family protein [Populus trichocarpa];; (*SWP) sp|Q9SIB2|KCS12_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1;; (*TAIR) AT2G28630.1 (e_value=0.0) | Symbols: KCS12 | 3-ketoacyl-CoA synthase 12 | chr2:12275719-12277149 REVERSE LENGTH=476;; (*ITAG) Solyc11g072990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53210906-53212306 transcript_region:SL2.40ch11:53210906..53212306- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00009468g0012.1 protein AED:0.25 eAED:0.25 QI:6|1|1|1|1|1|5|357|133; (*GB) gi|445612|prf||1909359A (e_value=2e-83) ribosomal protein S19;; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=4e-79) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=3e-80) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc01g097870.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:80331660-80334218 transcript_region:SL2.40ch01:80331660..80334218+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00009468g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|371; (*GB) gi|357440717|ref|XP_003590636.1| (e_value=2e-147) WD repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q498M4|WDR5_RAT (e_value=2e-122) WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1;; (*TAIR) AT4G02730.1 (e_value=2e-138) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:1207759-1209066 FORWARD LENGTH=333;; (*ITAG) Solyc09g065290.2.1 (e_value=3e-160) genomic_reference:SL2.40ch09 gene_region:58949458-58951870 transcript_region:SL2.40ch09:58949458..58951870+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0035064 NbS00009468g0013.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|0.5|0.66|3|10|178; (*GB) gi|225437034|ref|XP_002272980.1| (e_value=6e-62) PREDICTED: uncharacterized protein LOC100244184 [Vitis vinifera];; (*TAIR) AT4G02725.1 (e_value=9e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:1206055-1207290 FORWARD LENGTH=165;; (*ITAG) Solyc09g065300.2.1 (e_value=1e-74) genomic_reference:SL2.40ch09 gene_region:58951798-58957679 transcript_region:SL2.40ch09:58951798..58957679- functional_description:"Uncharacterized membrane protein (AHRD V1 *-*- Q0I8H8_SYNS3)"; NbS00009468g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|147779268|emb|CAN70089.1| (e_value=6e-40) hypothetical protein VITISV_038171 [Vitis vinifera];; (*ITAG) Solyc10g051090.1.1 (e_value=4e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00009468g0005.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|297737550|emb|CBI26751.3| (e_value=1e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g051090.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00040129g0008.1 protein AED:0.03 eAED:0.03 QI:315|1|1|1|1|1|7|325|506; (*GB) gi|147852216|emb|CAN82248.1| (e_value=0.0) hypothetical protein VITISV_036490 [Vitis vinifera];; (*SWP) sp|Q54SA1|PLDZ_DICDI (e_value=1e-42) Phospholipase D Z OS=Dictyostelium discoideum GN=pldZ PE=3 SV=1;; (*ITAG) Solyc08g068580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54923907-54930568 transcript_region:SL2.40ch08:54923907..54930568- go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D3 (AHRD V1 **** D3B1H4_POLPA); contains Interpro domain(s) IPR001736 Phospholipase D/Transphosphatidylase "; GO:0005515,GO:0004630 NbS00040129g0011.1 protein AED:0.40 eAED:0.40 QI:53|0.85|1|1|0.28|0.37|8|374|237; (*GB) gi|88175353|gb|ABD39695.1| (e_value=2e-92) fibrillin 8 [Coffea canephora];; (*SWP) sp|Q8W4F1|PAP10_ARATH (e_value=3e-93) Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana GN=PAP10 PE=1 SV=1;; (*TAIR) AT2G46910.1 (e_value=2e-94) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:19272427-19273856 FORWARD LENGTH=284;; (*ITAG) Solyc08g068590.2.1 (e_value=4e-128) genomic_reference:SL2.40ch08 gene_region:54933748-54939617 transcript_region:SL2.40ch08:54933748..54939617- go_terms:GO:0009507 functional_description:"PAP fibrillin family protein (AHRD V1 ***- B5W0K3_SPIMA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00002712g0003.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|0|0.5|2|0|62 NbS00002712g0002.1 protein AED:0.48 eAED:0.79 QI:0|0|0|0.66|0.5|0.66|3|0|144 NbS00001801g0010.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0.66|0.75|4|0|115 NbS00001801g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|445; (*GB) gi|33340517|gb|AAQ14854.1|AF321140_1 (e_value=0.0) S-adenosylmethionine synthase [Nicotiana tabacum];; (*SWP) sp|Q6SYB9|METK2_TOBAC (e_value=0.0) S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1;; (*TAIR) AT2G36880.2 (e_value=0.0) | Symbols: MAT3 | methionine adenosyltransferase 3 | chr2:15479721-15480893 REVERSE LENGTH=390;; (*ITAG) Solyc09g008280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1749950-1751122 transcript_region:SL2.40ch09:1749950..1751122+ go_terms:GO:0004478,GO:0005507 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0004478,GO:0005507 NbS00032348g0005.1 protein AED:0.18 eAED:0.18 QI:217|0.83|0.85|1|0.66|0.57|7|337|495; (*GB) gi|359485329|ref|XP_003633259.1| (e_value=5e-174) PREDICTED: uncharacterized protein LOC100243829 [Vitis vinifera];; (*TAIR) AT5G60580.3 (e_value=2e-87) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc07g044780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55141081-55156142 transcript_region:SL2.40ch07:55141081..55156142+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00032348g0008.1 protein AED:0.54 eAED:0.60 QI:74|0.66|0.42|0.71|0.5|0.71|7|0|267; (*GB) gi|225446891|ref|XP_002284045.1| (e_value=2e-116) PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera];; (*SWP) sp|Q66KH2|ERGI3_XENLA (e_value=6e-41) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1;; (*TAIR) AT3G22290.1 (e_value=4e-112) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc07g044810.2.1 (e_value=1e-121) genomic_reference:SL2.40ch07 gene_region:55163956-55178160 transcript_region:SL2.40ch07:55163956..55178160- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00040818g0002.1 protein AED:0.36 eAED:0.64 QI:0|0|0.25|1|1|1|4|309|157 NbS00015393g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.14|1|1|7|0|283; (*ITAG) Solyc08g044540.1.1 (e_value=9e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:33552497-33552721 transcript_region:SL2.40ch08:33552497..33552721+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003563g0008.1 protein AED:0.06 eAED:0.07 QI:113|0.5|0.71|0.85|0.5|0.42|7|325|362; (*GB) gi|147769276|emb|CAN61580.1| (e_value=6e-57) hypothetical protein VITISV_008033 [Vitis vinifera];; (*TAIR) AT4G09040.1 (e_value=2e-49) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:5795075-5797315 REVERSE LENGTH=304;; (*ITAG) Solyc04g074750.2.1 (e_value=2e-113) genomic_reference:SL2.40ch04 gene_region:58271847-58273865 transcript_region:SL2.40ch04:58271847..58273865- go_terms:GO:0008266 functional_description:"Polyadenylate-binding protein 1-A (AHRD V1 **-* PAP1A_DICDI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00003563g0007.1 protein AED:0.15 eAED:0.15 QI:213|1|1|1|0.8|0.83|6|313|328; (*GB) gi|225459199|ref|XP_002284035.1| (e_value=5e-132) PREDICTED: uncharacterized protein LOC100266077 [Vitis vinifera];; (*TAIR) AT4G09060.1 (e_value=5e-91) | Symbols: | unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:5797781-5800253 REVERSE LENGTH=341;; (*ITAG) Solyc04g074760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58274803-58279656 transcript_region:SL2.40ch04:58274803..58279656- functional_description:"SKIP interacting protein 16 (AHRD V1 *-*- B8Q8A2_ORYSI)"; NbS00045724g0004.1 protein AED:0.11 eAED:0.13 QI:28|0|0|0.66|0|0|6|0|430; (*GB) gi|359484991|ref|XP_002270183.2| (e_value=2e-141) PREDICTED: sodium transporter HKT1-like [Vitis vinifera];; (*SWP) sp|Q84TI7|HKT1_ARATH (e_value=4e-75) Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1;; (*TAIR) AT4G10310.1 (e_value=3e-76) | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6392008-6395667 FORWARD LENGTH=506;; (*ITAG) Solyc07g014690.2.1 (e_value=3e-177) genomic_reference:SL2.40ch07 gene_region:5103988-5106992 transcript_region:SL2.40ch07:5103988..5106992+ go_terms:GO:0015081 functional_description:"Potassium transporter (AHRD V1 **** A0MNZ1_THEHA); contains Interpro domain(s) IPR003445 Cation transporter "; GO:0015081 NbS00045724g0005.1 protein AED:0.30 eAED:0.54 QI:0|0|0|1|0|0|2|0|74 NbS00043982g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|98; (*ITAG) Solyc02g089450.1.1 (e_value=6e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45847727-45848023 transcript_region:SL2.40ch02:45847727..45848023- functional_description:"Unknown Protein (AHRD V1)"; NbS00000057g0114.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0|0.75|0.33|0|4|0|300 NbS00000057g0111.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.75|0.33|0|4|0|296 NbS00000057g0113.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|0|0.5|2|0|153 NbS00000057g0117.1 protein AED:0.03 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|433 NbC25874346g0004.1 protein AED:0.28 eAED:0.65 QI:7|0|0|1|1|0.5|2|0|174; (*GB) gi|255575451|ref|XP_002528627.1| (e_value=1e-100) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SCQ2|UPL7_ARATH (e_value=2e-97) E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1;; (*TAIR) AT3G53090.2 (e_value=1e-98) | Symbols: UPL7 | ubiquitin-protein ligase 7 | chr3:19679273-19684453 FORWARD LENGTH=1142;; (*ITAG) Solyc09g008700.1.1 (e_value=8e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2135770-2147539 transcript_region:SL2.40ch09:2135770..2147539- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 7 (AHRD V1 **** D7LUE6_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00024628g0013.1 protein AED:0.17 eAED:0.18 QI:0|1|0.81|1|1|1|11|542|940; (*GB) gi|225437402|ref|XP_002268231.1| (e_value=0.0) PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera];; (*SWP) sp|P87137|YDM6_SCHPO (e_value=5e-23) Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1;; (*TAIR) AT5G08600.1 (e_value=0.0) | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr5:2786298-2789736 FORWARD LENGTH=822;; (*ITAG) Solyc09g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:527331-535057 transcript_region:SL2.40ch09:527331..535057+ go_terms:GO:0032040 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 *-*- B6K6T5_SCHJY); contains Interpro domain(s) IPR006709 Small-subunit processome, Utp14 "; GO:0032040 NbS00024628g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|3|0|227; (*GB) gi|193527444|gb|ACF19787.1| (e_value=1e-84) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc03g062670.1.1 (e_value=6e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:29295085-29295933 transcript_region:SL2.40ch03:29295085..29295933+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IDF8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00024628g0014.1 protein AED:0.16 eAED:0.16 QI:103|1|1|1|1|1|3|152|254; (*GB) gi|356548164|ref|XP_003542473.1| (e_value=9e-55) PREDICTED: uncharacterized protein LOC100813295 [Glycine max];; (*TAIR) AT2G37390.2 (e_value=3e-44) | Symbols: NAKR2 | Chloroplast-targeted copper chaperone protein | chr2:15694300-15695461 FORWARD LENGTH=258;; (*ITAG) Solyc10g085910.1.1 (e_value=6e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64253897-64256291 transcript_region:SL2.40ch10:64253897..64256291- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q84TB9_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00024628g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.66|1|1|1|6|0|243; (*GB) gi|48093467|gb|AAT40110.1| (e_value=8e-152) putative UDP-glucuronate decarboxylase 4 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=9e-89) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G53520.4 (e_value=4e-143) | Symbols: UXS1 | UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=458;; (*ITAG) Solyc10g085920.1.1 (e_value=7e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64259534-64264315 transcript_region:SL2.40ch10:64259534..64264315- go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_KLEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00003716g0112.1 protein AED:0.05 eAED:0.05 QI:322|1|1|1|0.77|0.7|10|339|647 NbS00003716g0113.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.16|1|0.83|6|0|310 NbS00007098g0010.1 protein AED:0.05 eAED:0.05 QI:424|1|0.75|1|0.66|0.25|4|0|65; (*GB) gi|356531457|ref|XP_003534294.1| (e_value=2e-25) PREDICTED: transcription factor HBP-1a [Glycine max];; (*SWP) sp|P23922|HBP1A_WHEAT (e_value=3e-12) Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G32150.1 (e_value=1e-17) | Symbols: bZIP68, AtbZIP68 | basic region/leucine zipper transcription factor 68 | chr1:11566022-11568317 FORWARD LENGTH=389;; (*ITAG) Solyc08g076100.2.1 (e_value=6e-36) genomic_reference:SL2.40ch08 gene_region:57304940-57314726 transcript_region:SL2.40ch08:57304940..57314726- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00007098g0011.1 protein AED:0.12 eAED:0.12 QI:11|1|1|1|0.75|0.88|9|387|335; (*GB) gi|255555917|ref|XP_002518994.1| (e_value=2e-169) DNA-binding protein EMBP-1, putative [Ricinus communis];; (*SWP) sp|P23922|HBP1A_WHEAT (e_value=6e-51) Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT2G35530.1 (e_value=3e-131) | Symbols: bZIP16, AtbZIP16 | basic region/leucine zipper transcription factor 16 | chr2:14923280-14926025 REVERSE LENGTH=409;; (*ITAG) Solyc08g076100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57304940-57314726 transcript_region:SL2.40ch08:57304940..57314726- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00041701g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0|0.5|4|432|434; (*GB) gi|225424176|ref|XP_002284096.1| (e_value=0.0) PREDICTED: xylosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q5QQ56|XYLT1_CANFA (e_value=5e-20) Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1;; (*TAIR) AT1G71070.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:26807440-26809152 REVERSE LENGTH=395;; (*ITAG) Solyc05g008340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2699143-2703279 transcript_region:SL2.40ch05:2699143..2703279- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00015711g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0|1|0.33|0.25|4|0|289; (*GB) gi|161377377|gb|ABX71676.1| (e_value=1e-95) 60S ribosomal protein L6-like protein [Panax quinquefolius];; (*SWP) sp|P34091|RL6_MESCR (e_value=1e-85) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1;; (*TAIR) AT1G74050.1 (e_value=2e-79) | Symbols: | Ribosomal protein L6 family protein | chr1:27847256-27848680 REVERSE LENGTH=233;; (*ITAG) Solyc05g054070.2.1 (e_value=7e-92) genomic_reference:SL2.40ch05 gene_region:63196547-63198365 transcript_region:SL2.40ch05:63196547..63198365- go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E "; GO:0003735,GO:0003723 NbS00015711g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|289; (*GB) gi|255554725|ref|XP_002518400.1| (e_value=9e-69) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G62420.1 (e_value=5e-49) | Symbols: | Protein of unknown function (DUF506) | chr1:23102937-23104604 REVERSE LENGTH=283;; (*ITAG) Solyc11g012120.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5041281-5042288 transcript_region:SL2.40ch11:5041281..5042288- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00039874g0004.1 protein AED:0.27 eAED:0.27 QI:240|0.83|0.92|1|0.70|0.8|25|0|720; (*GB) gi|359484460|ref|XP_002273836.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis vinifera];; (*SWP) sp|Q16ZN9|COG3_AEDAE (e_value=2e-93) Conserved oligomeric Golgi complex subunit 3 OS=Aedes aegypti GN=Cog3 PE=3 SV=1;; (*TAIR) AT1G73430.2 (e_value=0.0) | Symbols: | sec34-like family protein | chr1:27604096-27610829 FORWARD LENGTH=784;; (*ITAG) Solyc04g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2253610-2275631 transcript_region:SL2.40ch04:2253610..2275631+ go_terms:GO:0008565,GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 3 (AHRD V1 ***- COG3_HUMAN); contains Interpro domain(s) IPR007265 Sec34-like protein "; GO:0008565,GO:0005515 NbC23973679g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|224058852|ref|XP_002299641.1| (e_value=1e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7C0|HSP7O_ARATH (e_value=2e-39) Heat shock 70 kDa protein 14 OS=Arabidopsis thaliana GN=HSP70-14 PE=1 SV=1;; (*TAIR) AT1G79930.2 (e_value=2e-40) | Symbols: HSP91 | heat shock protein 91 | chr1:30063924-30067067 REVERSE LENGTH=789;; (*ITAG) Solyc12g043120.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44226370-44230445 transcript_region:SL2.40ch12:44226370..44230445- go_terms:GO:0006265,GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0006265,GO:0005524 NbS00009615g0002.1 protein AED:0.25 eAED:0.25 QI:119|0.8|0.5|1|1|1|6|0|482; (*GB) gi|225448347|ref|XP_002267035.1| (e_value=2e-171) PREDICTED: uncharacterized protein LOC100243301 [Vitis vinifera];; (*TAIR) AT3G10840.1 (e_value=5e-142) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:3391207-3393281 REVERSE LENGTH=466;; (*ITAG) Solyc03g095290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49762383-49769731 transcript_region:SL2.40ch03:49762383..49769731+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7L9R5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00009615g0011.1 protein AED:0.00 eAED:0.00 QI:216|1|1|1|1|1|2|1188|317; (*GB) gi|224127961|ref|XP_002329220.1| (e_value=2e-101) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40815.1 (e_value=3e-49) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:17034736-17036110 REVERSE LENGTH=367;; (*ITAG) Solyc03g095300.2.1 (e_value=4e-73) genomic_reference:SL2.40ch03 gene_region:49769988-49771131 transcript_region:SL2.40ch03:49769988..49771131- functional_description:"Proline-rich family protein (AHRD V1 **-- D7LFU9_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00009615g0010.1 protein AED:0.35 eAED:0.35 QI:101|1|1|1|0.83|0.71|7|221|348; (*GB) gi|224127957|ref|XP_002329219.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A7RK30|QORL2_NEMVE (e_value=1e-57) Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1;; (*TAIR) AT3G56460.1 (e_value=0.0) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr3:20933029-20934425 REVERSE LENGTH=348;; (*ITAG) Solyc03g095360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49858667-49872626 transcript_region:SL2.40ch03:49858667..49872626+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase zinc-binding (AHRD V1 ***- C7D9L1_9RHOB); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00009615g0112.1 protein AED:0.29 eAED:0.29 QI:182|0.75|0.8|1|1|1|5|0|510 NbS00009615g0102.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|146 NbS00009615g0211.1 protein AED:0.10 eAED:0.11 QI:613|0.63|0.5|1|0.27|0|12|283|1255 NbS00009615g0210.1 protein AED:0.29 eAED:0.29 QI:723|1|0.88|1|0.62|0.55|9|0|478 NbS00009615g0209.1 protein AED:0.20 eAED:0.20 QI:52|0.66|0.38|1|0.66|0.69|13|0|688 NbS00020429g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0|1|0.66|0.5|4|0|357; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=9e-108) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=5e-67) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT5G53750.1 (e_value=9e-69) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc02g078480.2.1 (e_value=3e-177) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00020429g0010.1 protein AED:0.55 eAED:0.55 QI:0|0.5|0|1|0.5|0.33|3|0|174; (*GB) gi|255556013|ref|XP_002519041.1| (e_value=1e-60) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g078470.2.1 (e_value=2e-52) genomic_reference:SL2.40ch02 gene_region:37715585-37718968 transcript_region:SL2.40ch02:37715585..37718968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003382g0008.1 protein AED:0.24 eAED:0.24 QI:932|0.75|0.8|1|0.25|0.4|5|397|90 NbS00003382g0007.1 protein AED:0.17 eAED:0.18 QI:468|1|0.9|1|0.55|0.8|10|0|472; (*GB) gi|225457767|ref|XP_002278193.1| (e_value=0.0) PREDICTED: serine carboxypeptidase-like 42 [Vitis vinifera];; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=0.0) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1;; (*TAIR) AT5G42240.1 (e_value=0.0) | Symbols: scpl42 | serine carboxypeptidase-like 42 | chr5:16888717-16890931 FORWARD LENGTH=473;; (*ITAG) Solyc04g064760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55019440-55023522 transcript_region:SL2.40ch04:55019440..55023522- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00046334g0004.1 protein AED:0.02 eAED:0.02 QI:12|1|0.66|1|0.5|0.33|3|0|76; (*GB) gi|225461890|ref|XP_002264649.1| (e_value=9e-26) PREDICTED: meiotic recombination protein SPO11-1-like [Vitis vinifera];; (*SWP) sp|Q9M4A2|SPO11_ARATH (e_value=3e-18) Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1;; (*TAIR) AT3G13170.1 (e_value=2e-19) | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, subunit A protein | chr3:4231560-4234192 REVERSE LENGTH=362;; (*ITAG) Solyc07g065440.2.1 (e_value=3e-42) genomic_reference:SL2.40ch07 gene_region:64417269-64419854 transcript_region:SL2.40ch07:64417269..64419854- go_terms:GO:0005694 functional_description:"Meiotic recombination protein SPO11 (AHRD V1 ***- B6TWI5_MAIZE); contains Interpro domain(s) IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal "; GO:0005694 NbS00046334g0001.1 protein AED:0.58 eAED:0.63 QI:0|0.25|0.22|0.88|1|1|9|0|257; (*GB) gi|225461890|ref|XP_002264649.1| (e_value=1e-73) PREDICTED: meiotic recombination protein SPO11-1-like [Vitis vinifera];; (*SWP) sp|Q9M4A2|SPO11_ARATH (e_value=4e-67) Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1;; (*TAIR) AT3G13170.1 (e_value=3e-68) | Symbols: ATSPO11-1 | Spo11/DNA topoisomerase VI, subunit A protein | chr3:4231560-4234192 REVERSE LENGTH=362;; (*ITAG) Solyc07g065430.2.1 (e_value=1e-48) genomic_reference:SL2.40ch07 gene_region:64411861-64416712 transcript_region:SL2.40ch07:64411861..64416712- go_terms:GO:0030001,GO:0005694 functional_description:"DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI); contains Interpro domain(s) IPR013048 Meiotic recombination Spo11 "; GO:0030001,GO:0005694 NbS00006731g0001.1 protein AED:0.26 eAED:0.27 QI:583|1|0.5|1|0|0|2|0|243; (*GB) gi|225435209|ref|XP_002284873.1| (e_value=2e-118) PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 [Vitis vinifera];; (*SWP) sp|Q9M1E8|SEN21_ARATH (e_value=4e-95) tRNA-splicing endonuclease subunit Sen2-1 OS=Arabidopsis thaliana GN=SEN1 PE=2 SV=1;; (*TAIR) AT3G45590.2 (e_value=3e-96) | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | chr3:16733062-16733775 FORWARD LENGTH=237;; (*ITAG) Solyc06g075350.1.1 (e_value=1e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43164928-43165659 transcript_region:SL2.40ch06:43164928..43165659+ go_terms:GO:0004518 functional_description:"tRNA-splicing endonuclease (AHRD V1 *-*- ENDA_SULSO); contains Interpro domain(s) IPR006677 tRNA intron endonuclease, catalytic domain-like "; GO:0004518 NbS00006731g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|286; (*GB) gi|225435207|ref|XP_002284871.1| (e_value=8e-137) PREDICTED: uncharacterized protein LOC100260311 isoform 1 [Vitis vinifera];; (*TAIR) AT3G45600.1 (e_value=8e-131) | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735854 REVERSE LENGTH=285;; (*ITAG) Solyc06g075360.2.1 (e_value=2e-163) genomic_reference:SL2.40ch06 gene_region:43165862-43169468 transcript_region:SL2.40ch06:43165862..43169468- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B6T9C5_MAIZE); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00018206g0001.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.33|1|1|3|0|89; (*GB) gi|363814559|ref|NP_001242755.1| (e_value=8e-17) uncharacterized protein LOC100797401 precursor [Glycine max]; NbS00012369g0008.1 protein AED:0.14 eAED:0.14 QI:129|0.88|0.89|1|0.77|0.78|19|0|764; (*GB) gi|302142638|emb|CBI19841.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=0.0) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=0.0) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc12g089280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00029485g0001.1 protein AED:0.00 eAED:0.00 QI:110|1|0.5|1|0|0|2|0|205; (*GB) gi|350537843|ref|NP_001234313.1| (e_value=7e-95) ethylene response factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9LY05|EF106_ARATH (e_value=2e-46) Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1;; (*TAIR) AT5G07580.1 (e_value=2e-46) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:2399525-2400349 FORWARD LENGTH=274;; (*ITAG) Solyc05g052030.1.1 (e_value=1e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:61516679-61517284 transcript_region:SL2.40ch05:61516679..61517284- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00029485g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|88; (*ITAG) Solyc05g017840.2.1 (e_value=6e-16) genomic_reference:SL2.40ch05 gene_region:18466904-18469886 transcript_region:SL2.40ch05:18466904..18469886+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011543g0004.1 protein AED:0.21 eAED:0.26 QI:0|0.33|0.14|0.85|1|1|7|0|591; (*GB) gi|115477218|ref|NP_001062205.1| (e_value=6e-154) Os08g0510300 [Oryza sativa Japonica Group];; (*SWP) sp|Q84YJ9|HAK26_ORYSJ (e_value=2e-155) Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1;; (*TAIR) AT5G14880.1 (e_value=5e-111) | Symbols: | Potassium transporter family protein | chr5:4814244-4817667 FORWARD LENGTH=781;; (*ITAG) Solyc06g051830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:31997988-32001566 transcript_region:SL2.40ch06:31997988..32001566- go_terms:GO:0009674 functional_description:"Potassium transporter 17 (AHRD V1 **** B6T8T1_MAIZE); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00043782g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|225461712|ref|XP_002283237.1| (e_value=8e-175) PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Vitis vinifera];; (*SWP) sp|Q9MAG8|PPR79_ARATH (e_value=6e-133) Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1;; (*TAIR) AT1G53330.1 (e_value=5e-134) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19896027-19897442 FORWARD LENGTH=471;; (*ITAG) Solyc12g014330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5146927-5148339 transcript_region:SL2.40ch12:5146927..5148339+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KKH1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021378g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|0|0|2|0|322; (*GB) gi|225445248|ref|XP_002281028.1| (e_value=2e-100) PREDICTED: heat stress transcription factor C-1 [Vitis vinifera];; (*SWP) sp|Q9LV52|HSFC1_ARATH (e_value=2e-88) Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1;; (*TAIR) AT3G24520.1 (e_value=1e-89) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330;; (*ITAG) Solyc12g007070.1.1 (e_value=9e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1512824-1514090 transcript_region:SL2.40ch12:1512824..1514090+ go_terms:GO:0005634 functional_description:"Heat stress transcription factor A3 (AHRD V1 ***- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00021415g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|353; (*GB) gi|157932074|gb|ABW05088.1| (e_value=3e-159) ovate-like protein [Nicotiana tabacum];; (*TAIR) AT2G18500.1 (e_value=9e-29) | Symbols: ATOFP7, OFP7 | ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315;; (*ITAG) Solyc03g034100.2.1 (e_value=3e-46) genomic_reference:SL2.40ch03 gene_region:10070572-10072340 transcript_region:SL2.40ch03:10070572..10072340+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00021415g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|173; (*GB) gi|156070758|gb|ABU45173.1| (e_value=1e-72) unknown [Solanum melongena];; (*SWP) sp|Q9ZU67|PP162_ARATH (e_value=2e-36) Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1;; (*TAIR) AT2G18520.1 (e_value=1e-37) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8034036-8035292 REVERSE LENGTH=418;; (*ITAG) Solyc02g085650.2.1 (e_value=2e-73) genomic_reference:SL2.40ch02 gene_region:43061571-43067422 transcript_region:SL2.40ch02:43061571..43067422+ go_terms:GO:0006508,GO:0009987 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MBF2_ARALY); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0006508,GO:0009987 NbS00021415g0005.1 protein AED:0.50 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|156070779|gb|ABU45192.1| (e_value=2e-40) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9M065|PP352_ARATH (e_value=7e-29) Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1;; (*TAIR) AT4G36680.1 (e_value=6e-30) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17292479-17293717 REVERSE LENGTH=412;; (*ITAG) Solyc02g085650.2.1 (e_value=8e-41) genomic_reference:SL2.40ch02 gene_region:43061571-43067422 transcript_region:SL2.40ch02:43061571..43067422+ go_terms:GO:0006508,GO:0009987 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MBF2_ARALY); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0006508,GO:0009987 NbS00007597g0011.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|1|1|6|0|356; (*GB) gi|21311775|gb|AAM46847.1|AF498264_1 (e_value=0.0) steroleosin-B [Sesamum indicum];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=1e-31) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT4G10020.1 (e_value=9e-179) | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268363-6270179 FORWARD LENGTH=389;; (*ITAG) Solyc06g064650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36682986-36685667 transcript_region:SL2.40ch06:36682986..36685667- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00007597g0004.1 protein AED:0.46 eAED:0.77 QI:0|0.4|0.33|0.83|1|1|6|0|242; (*GB) gi|255545484|ref|XP_002513802.1| (e_value=9e-16) androgen induced inhibitor of proliferation (as3) / pds5, putative [Ricinus communis];; (*ITAG) Solyc06g060380.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:34764560-34793492 transcript_region:SL2.40ch06:34764560..34793492+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 ***- PDS5A_RAT); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00007597g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|224146274|ref|XP_002325945.1| (e_value=2e-47) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9C9I8|ERF20_ARATH (e_value=2e-43) Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1;; (*TAIR) AT1G71520.1 (e_value=1e-44) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143;; (*ITAG) Solyc01g057080.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:51195128-51195469 transcript_region:SL2.40ch01:51195128..51195469- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00007597g0013.1 protein AED:0.37 eAED:0.37 QI:0|1|0.33|1|1|1|3|0|291; (*GB) gi|359495241|ref|XP_003634942.1| (e_value=2e-111) PREDICTED: uncharacterized protein LOC100248314 isoform 2 [Vitis vinifera];; (*TAIR) AT1G71500.1 (e_value=1e-108) | Symbols: | Rieske (2Fe-2S) domain-containing protein | chr1:26936084-26937331 FORWARD LENGTH=287;; (*ITAG) Solyc11g042640.1.1 (e_value=1e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:32808211-32811406 transcript_region:SL2.40ch11:32808211..32811406+ go_terms:GO:0055114 functional_description:"Rieske (2Fe-2S) domain protein (AHRD V1 *-*- C7QP67_CYAP0); contains Interpro domain(s) IPR017941 Rieske [2Fe-2S] iron-sulphur domain "; GO:0055114 NbS00045670g0001.1 protein AED:0.14 eAED:0.14 QI:3192|1|1|1|0.5|0.33|3|410|243; (*GB) gi|224109842|ref|XP_002315330.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04280.1 (e_value=4e-34) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr5:1192461-1195413 FORWARD LENGTH=310;; (*ITAG) Solyc03g071560.2.1 (e_value=5e-62) genomic_reference:SL2.40ch03 gene_region:41147503-41156677 transcript_region:SL2.40ch03:41147503..41156677+ go_terms:GO:0008143,GO:0003730 functional_description:"RNA-binding protein-like (AHRD V1 *-** Q8RWN5_ARATH); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008143,GO:0003730 NbS00059625g0005.1 protein AED:0.23 eAED:0.23 QI:98|1|1|1|0.6|0.72|11|291|356; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=6e-149) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=7e-139) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc03g082390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45884107-45891169 transcript_region:SL2.40ch03:45884107..45891169+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein (AHRD V1 *-** Q1PFP3_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00009706g0001.1 protein AED:0.20 eAED:0.20 QI:112|1|1|1|0.5|0.33|3|259|161; (*GB) gi|899367|emb|CAA61747.1| (e_value=1e-36) HMGI/Y [Pisum sativum];; (*SWP) sp|Q00423|HMGYA_SOYBN (e_value=1e-23) HMG-Y-related protein A OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G14900.1 (e_value=5e-28) | Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204;; (*ITAG) Solyc05g051290.2.1 (e_value=2e-51) genomic_reference:SL2.40ch05 gene_region:60727691-60729288 transcript_region:SL2.40ch05:60727691..60729288- go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group family (AHRD V1 *--- B9H3A3_POPTR); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0005634,GO:0003677 NbS00009706g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.71|1|0.83|0.85|7|277|452; (*GB) gi|1087073|gb|AAB34987.1| (e_value=0.0) calmodulin-binding heat-shock protein [Nicotiana tabacum];; (*TAIR) AT5G37710.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14979159-14981400 FORWARD LENGTH=436;; (*ITAG) Solyc05g051280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60717214-60723777 transcript_region:SL2.40ch05:60717214..60723777+ go_terms:GO:0005516 functional_description:"Calmodulin-binding heat-shock protein (AHRD V1 **-* Q41251_TOBAC); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00025719g0004.1 protein AED:0.41 eAED:0.47 QI:0|0.6|0.16|0.83|0.6|0.5|6|0|208; (*GB) gi|224126349|ref|XP_002329532.1| (e_value=3e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9AST6|VSP55_ARATH (e_value=1e-55) Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1;; (*TAIR) AT1G32410.5 (e_value=9e-57) | Symbols: | Vacuolar protein sorting 55 (VPS55) family protein | chr1:11694398-11695297 FORWARD LENGTH=140;; (*ITAG) Solyc08g077260.2.1 (e_value=2e-76) genomic_reference:SL2.40ch08 gene_region:58350941-58352212 transcript_region:SL2.40ch08:58350941..58352212+ go_terms:GO:0005215 functional_description:"Leptin receptor overlapping transcript-like 1 (AHRD V1 **-- C1BVZ5_ESOLU); contains Interpro domain(s) IPR007262 Vacuolar protein sorting 55 "; GO:0005215 NbS00027866g0002.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|1|1|2|0|536; (*GB) gi|225454342|ref|XP_002275850.1| (e_value=1e-151) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=3e-98) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=7e-93) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00018687g0006.1 protein AED:0.24 eAED:0.24 QI:122|0.86|0.87|1|0.86|0.93|16|828|621; (*GB) gi|356570562|ref|XP_003553454.1| (e_value=0.0) PREDICTED: mRNA-capping enzyme-like [Glycine max];; (*SWP) sp|O55236|MCE1_MOUSE (e_value=2e-69) mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1;; (*TAIR) AT3G09100.2 (e_value=0.0) | Symbols: | mRNA capping enzyme family protein | chr3:2788435-2792913 REVERSE LENGTH=672;; (*ITAG) Solyc09g065010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58280979-58301208 transcript_region:SL2.40ch09:58280979..58301208- go_terms:GO:0004484 functional_description:"mRNA-capping enzyme subunit alpha (AHRD V1 *-** C4Y3U6_CLAL4); contains Interpro domain(s) IPR001339 mRNA capping enzyme "; GO:0004484 NbS00016107g0009.1 protein AED:0.16 eAED:0.16 QI:155|1|0.66|1|1|0.66|3|0|150; (*GB) gi|297741150|emb|CBI31881.3| (e_value=4e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1Q1|TL225_ARATH (e_value=2e-45) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1;; (*TAIR) AT1G12250.2 (e_value=3e-49) | Symbols: | Pentapeptide repeat-containing protein | chr1:4159623-4161269 FORWARD LENGTH=206;; (*ITAG) Solyc08g079110.2.1 (e_value=2e-73) genomic_reference:SL2.40ch08 gene_region:59918803-59923661 transcript_region:SL2.40ch08:59918803..59923661+ functional_description:"Pentapeptide repeat (AHRD V1 *-*- Q4C7L8_CROWT); contains Interpro domain(s) IPR001646 Pentapeptide repeat "; NbS00016107g0010.1 protein AED:0.16 eAED:0.16 QI:188|0.83|0.85|1|0.66|0.85|7|141|184; (*GB) gi|225426944|ref|XP_002266233.1| (e_value=4e-107) PREDICTED: axial regulator YABBY 1 [Vitis vinifera];; (*SWP) sp|Q9XFB1|YAB3_ARATH (e_value=3e-67) Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1;; (*TAIR) AT4G00180.1 (e_value=2e-68) | Symbols: YAB3 | Plant-specific transcription factor YABBY family protein | chr4:72804-75089 REVERSE LENGTH=240;; (*ITAG) Solyc08g079100.2.1 (e_value=5e-109) genomic_reference:SL2.40ch08 gene_region:59908783-59911941 transcript_region:SL2.40ch08:59908783..59911941- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00016107g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|333 NbS00040530g0013.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0|1|0.66|0.5|4|0|1062; (*GB) gi|359492322|ref|XP_002278001.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Vitis vinifera];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=0.0) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc04g064940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55209281-55212860 transcript_region:SL2.40ch04:55209281..55212860- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00034700g0012.1 protein AED:0.01 eAED:0.01 QI:310|1|1|1|1|1|2|295|655; (*GB) gi|38045385|gb|AAR08677.1| (e_value=0.0) EIL1 [Petunia x hybrida];; (*SWP) sp|O23116|EIL3_ARATH (e_value=4e-147) ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1;; (*TAIR) AT1G73730.1 (e_value=3e-148) | Symbols: EIL3, SLIM1, ATSLIM, AtEIL3 | ETHYLENE-INSENSITIVE3-like 3 | chr1:27730434-27732363 REVERSE LENGTH=567;; (*ITAG) Solyc01g006650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1246050-1248906 transcript_region:SL2.40ch01:1246050..1248906+ go_terms:GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 *-** D5L144_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0003700 NbS00034700g0013.1 protein AED:0.02 eAED:0.02 QI:0|0.71|0.5|0.87|1|0.75|8|0|2287; (*GB) gi|225435546|ref|XP_002283091.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253550 [Vitis vinifera];; (*SWP) sp|B2HMK0|FAA32_MYCMM (e_value=2e-70) Long-chain-fatty-acid--AMP ligase FadD32 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD32 PE=3 SV=1;; (*TAIR) AT1G20480.1 (e_value=9e-17) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:7094978-7097073 REVERSE LENGTH=565;; (*ITAG) Solyc01g006640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1235698-1244411 transcript_region:SL2.40ch01:1235698..1244411+ go_terms:GO:0008152,GO:0016740,GO:0031177,GO:0048037,GO:0000036,GO:0016491,GO:0055114 functional_description:"AMP-dependent synthetase and ligase (AHRD V1 *--- B2J012_NOSP7); contains Interpro domain(s) IPR011614 Catalase, N-terminal "; GO:0008152,GO:0016740,GO:0031177,GO:0048037,GO:0000036,GO:0016491,GO:0055114 NbS00059193g0005.1 protein AED:0.13 eAED:0.13 QI:166|1|1|1|0.75|0.8|5|565|221; (*GB) gi|152963813|gb|ABS50234.1| (e_value=2e-123) Ran binding protein [Nicotiana benthamiana];; (*SWP) sp|P92985|RBP1C_ARATH (e_value=7e-85) Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1;; (*TAIR) AT5G58590.1 (e_value=5e-86) | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680319-23681714 REVERSE LENGTH=219;; (*ITAG) Solyc06g082120.2.1 (e_value=4e-90) genomic_reference:SL2.40ch06 gene_region:44333171-44336113 transcript_region:SL2.40ch06:44333171..44336113+ go_terms:GO:0008536 functional_description:"Ran GTPase binding protein (AHRD V1 **** C4R913_PICPG); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0008536 NbS00059193g0006.1 protein AED:0.30 eAED:0.48 QI:0|0|0|1|0|0.2|5|0|263; (*ITAG) Solyc04g072360.1.1 (e_value=4e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56971123-56973353 transcript_region:SL2.40ch04:56971123..56973353+ go_terms:GO:0031177 functional_description:"F-box/LRR-repeat protein 13 (AHRD V1 ***- FBL13_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0031177 NbS00006130g0032.1 protein AED:0.01 eAED:0.01 QI:0|0.8|0.83|1|0.8|0.83|6|653|616; (*GB) gi|225456106|ref|XP_002281466.1| (e_value=0.0) PREDICTED: 66 kDa stress protein [Vitis vinifera];; (*SWP) sp|P90587|WD66_PHYPO (e_value=4e-162) 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1;; (*TAIR) AT3G18060.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609;; (*ITAG) Solyc03g119090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61843010-61849696 transcript_region:SL2.40ch03:61843010..61849696- go_terms:GO:0003779,GO:0000166 functional_description:"WD repeat-containing protein 1 (AHRD V1 ***- B5X1Z0_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0003779,GO:0000166 NbS00006130g0031.1 protein AED:0.06 eAED:0.07 QI:0|0.83|0.57|1|0.5|0.57|7|0|346; (*GB) gi|224133196|ref|XP_002321507.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XFK7|MFT_ARATH (e_value=1e-89) Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1;; (*TAIR) AT1G18100.1 (e_value=1e-90) | Symbols: E12A11, MFT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:6228049-6230110 REVERSE LENGTH=173;; (*ITAG) Solyc03g119100.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61852159-61853792 transcript_region:SL2.40ch03:61852159..61853792- go_terms:GO:0008429 functional_description:"Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT07_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; GO:0008429 NbS00006130g0037.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0|0.5|0.66|0.5|4|0|200; (*GB) gi|359488195|ref|XP_002272597.2| (e_value=2e-44) PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera];; (*SWP) sp|Q6YW64|DRB4_ORYSJ (e_value=1e-25) Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1;; (*TAIR) AT1G09700.1 (e_value=1e-19) | Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419;; (*ITAG) Solyc03g118950.1.1 (e_value=3e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:61759053-61760339 transcript_region:SL2.40ch03:61759053..61760339+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein 3 (AHRD V1 ***- D7LRB5_ARALY); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00006130g0030.1 protein AED:0.25 eAED:0.25 QI:125|1|1|1|1|1|2|196|330; (*GB) gi|297734302|emb|CBI15549.3| (e_value=2e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SUC9|UGPI7_ARATH (e_value=4e-65) Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1;; (*TAIR) AT3G18050.1 (e_value=5e-110) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6180931-6182593 FORWARD LENGTH=335;; (*ITAG) Solyc03g119110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61856056-61858663 transcript_region:SL2.40ch03:61856056..61858663- functional_description:"Uncharacterized GPI-anchored protein At4g28100 (AHRD V1 ***- UGPI7_ARATH)"; NbS00006130g0033.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|2|165|127; (*GB) gi|225456018|ref|XP_002279561.1| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100256054 [Vitis vinifera];; (*TAIR) AT4G21460.1 (e_value=9e-15) | Symbols: | Ribosomal protein S24/S35, mitochondrial | chr4:11428530-11430390 FORWARD LENGTH=415;; (*ITAG) Solyc03g119160.2.1 (e_value=6e-59) genomic_reference:SL2.40ch03 gene_region:61902516-61904089 transcript_region:SL2.40ch03:61902516..61904089+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006130g0035.1 protein AED:0.02 eAED:0.02 QI:1363|1|1|1|0.75|0.4|5|684|545; (*GB) gi|555655|gb|AAA50196.1| (e_value=2e-123) DNA-binding protein [Nicotiana tabacum];; (*TAIR) AT3G18035.1 (e_value=8e-20) | Symbols: HON4 | winged-helix DNA-binding transcription factor family protein | chr3:6169384-6171558 REVERSE LENGTH=480;; (*ITAG) Solyc03g119130.2.1 (e_value=5e-68) genomic_reference:SL2.40ch03 gene_region:61877151-61881943 transcript_region:SL2.40ch03:61877151..61881943+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H1 (AHRD V1 *-*- Q41025_PEA); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00006130g0036.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|1|1|1|4|0|701; (*GB) gi|359491499|ref|XP_003634283.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc03g119120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61865183-61867784 transcript_region:SL2.40ch03:61865183..61867784+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006130g0034.1 protein AED:0.27 eAED:0.27 QI:653|0.92|0.8|1|0.92|0.93|15|391|1356; (*GB) gi|359491503|ref|XP_003634285.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854850 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=5e-82) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G18160.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:6249126-6253835 FORWARD LENGTH=992;; (*ITAG) Solyc03g119140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61887750-61899889 transcript_region:SL2.40ch03:61887750..61899889+ go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712,GO:0004709 NbS00007850g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0.25|0.75|0|0|4|0|430; (*GB) gi|225434961|ref|XP_002283909.1| (e_value=0.0) PREDICTED: fasciclin-like arabinogalactan protein 4 [Vitis vinifera];; (*SWP) sp|Q9SNC3|FLA4_ARATH (e_value=1e-125) Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1;; (*TAIR) AT3G46550.1 (e_value=9e-127) | Symbols: SOS5 | Fasciclin-like arabinogalactan family protein | chr3:17136612-17137874 REVERSE LENGTH=420;; (*ITAG) Solyc03g112880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57222149-57223432 transcript_region:SL2.40ch03:57222149..57223432- go_terms:GO:0005515,GO:0030247 functional_description:"Fasciclin-like arabinogalactan protein 9 (AHRD V1 ***- A9XTL4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005515,GO:0030247 NbS00004260g0022.1 protein AED:0.01 eAED:0.01 QI:11|1|1|1|0|0|2|66|92; (*GB) gi|356498278|ref|XP_003517980.1| (e_value=4e-20) PREDICTED: uncharacterized protein LOC100813538 [Glycine max];; (*TAIR) AT3G25855.1 (e_value=5e-19) | Symbols: | Copper transport protein family | chr3:9459608-9460267 REVERSE LENGTH=112;; (*ITAG) Solyc03g119630.2.1 (e_value=4e-14) genomic_reference:SL2.40ch03 gene_region:62245301-62246283 transcript_region:SL2.40ch03:62245301..62246283+ go_terms:GO:0030001 functional_description:"Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *-*- Q69N34_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00004260g0018.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|196|212; (*GB) gi|359472969|ref|XP_002282300.2| (e_value=3e-99) PREDICTED: uncharacterized protein LOC100256114 [Vitis vinifera];; (*TAIR) AT4G39670.1 (e_value=2e-95) | Symbols: | Glycolipid transfer protein (GLTP) family protein | chr4:18410172-18410861 FORWARD LENGTH=229;; (*ITAG) Solyc12g033130.1.1 (e_value=9e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:22867958-22869544 transcript_region:SL2.40ch12:22867958..22869544- go_terms:GO:0005737 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 ***- GLTD1_MOUSE); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0005737 NbS00004260g0019.1 protein AED:0.13 eAED:0.16 QI:0|1|0.6|1|1|1|5|0|456; (*GB) gi|255576459|ref|XP_002529121.1| (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q1RJT3|ODP2_RICBR (e_value=2e-48) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1;; (*TAIR) AT3G25860.1 (e_value=1e-172) | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480;; (*ITAG) Solyc05g009530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3737122-3743261 transcript_region:SL2.40ch05:3737122..3743261- go_terms:GO:0004742 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0004742 NbS00004260g0020.1 protein AED:0.17 eAED:0.23 QI:0|1|0.33|1|1|1|3|0|157; (*GB) gi|297823853|ref|XP_002879809.1| (e_value=2e-73) radical SAM domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q2JMN2|RLMN_SYNJB (e_value=2e-43) Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rlmN PE=3 SV=1;; (*TAIR) AT2G39670.1 (e_value=2e-75) | Symbols: | Radical SAM superfamily protein | chr2:16534303-16536986 FORWARD LENGTH=428;; (*ITAG) Solyc06g030580.2.1 (e_value=2e-87) genomic_reference:SL2.40ch06 gene_region:16518860-16520599 transcript_region:SL2.40ch06:16518860..16520599+ functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- D5A1S9_SPIPL)"; NbS00004260g0028.1 protein AED:0.20 eAED:0.28 QI:0|0.5|0.4|1|0.25|0.6|5|0|152; (*GB) gi|255584867|ref|XP_002533149.1| (e_value=1e-77) catalytic, putative [Ricinus communis];; (*SWP) sp|B0JT33|RLMN_MICAN (e_value=9e-53) Ribosomal RNA large subunit methyltransferase N OS=Microcystis aeruginosa (strain NIES-843) GN=rlmN PE=3 SV=1;; (*TAIR) AT2G39670.2 (e_value=2e-70) | Symbols: | Radical SAM superfamily protein | chr2:16534303-16536986 FORWARD LENGTH=431;; (*ITAG) Solyc06g030570.2.1 (e_value=2e-92) genomic_reference:SL2.40ch06 gene_region:16498440-16505098 transcript_region:SL2.40ch06:16498440..16505098+ go_terms:GO:0051536 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- B5W4V1_SPIMA); contains Interpro domain(s) IPR007197 Radical SAM "; GO:0051536 NbS00054015g0005.1 protein AED:0.19 eAED:0.19 QI:16|0.66|0.85|0.85|0.16|0.57|7|233|213; (*GB) gi|359479780|ref|XP_002272153.2| (e_value=2e-53) PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=1e-49) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=9e-51) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g080540.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:72299197-72301457 transcript_region:SL2.40ch01:72299197..72301457+ go_terms:GO:0009927 functional_description:"Histidine-containing phosphotransfer protein (AHRD V1 **** Q94KS0_CATRO); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00054015g0006.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.57|0.85|0.83|0.85|7|0|435; (*GB) gi|359479848|ref|XP_002270886.2| (e_value=2e-152) PREDICTED: LOW QUALITY PROTEIN: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Vitis vinifera];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=1e-112) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G35960.1 (e_value=6e-133) | Symbols: | Protein kinase family protein | chr5:14108524-14110536 REVERSE LENGTH=429;; (*ITAG) Solyc09g074250.2.1 (e_value=2e-145) genomic_reference:SL2.40ch09 gene_region:61525297-61527952 transcript_region:SL2.40ch09:61525297..61527952+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00020433g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|360; (*GB) gi|255574834|ref|XP_002528324.1| (e_value=2e-141) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SIZ6|GDL47_ARATH (e_value=4e-123) GDSL esterase/lipase At2g40250 OS=Arabidopsis thaliana GN=At2g40250 PE=2 SV=1;; (*TAIR) AT2G40250.1 (e_value=3e-124) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr2:16813330-16815251 FORWARD LENGTH=361;; (*ITAG) Solyc09g030370.2.1 (e_value=2e-121) genomic_reference:SL2.40ch09 gene_region:19776545-19777764 transcript_region:SL2.40ch09:19776545..19777764+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g30310 (AHRD V1 ***- GDL42_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00005610g0004.1 protein AED:0.19 eAED:0.19 QI:82|1|1|1|0.8|0.83|6|336|298; (*GB) gi|257831431|gb|ACV71016.1| (e_value=7e-144) UPA16 [Capsicum annuum];; (*SWP) sp|O82587|SWT12_ARATH (e_value=6e-87) Bidirectional sugar transporter SWEET12 OS=Arabidopsis thaliana GN=SWEET12 PE=2 SV=1;; (*TAIR) AT5G23660.1 (e_value=5e-88) | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285;; (*ITAG) Solyc06g072620.2.1 (e_value=2e-153) genomic_reference:SL2.40ch06 gene_region:41175930-41177783 transcript_region:SL2.40ch06:41175930..41177783+ go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00005610g0105.1 protein AED:0.18 eAED:0.18 QI:156|0.8|0.66|1|1|1|6|209|260 NbS00005610g0107.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|0|0|6|0|320 NbS00005610g0213.1 protein AED:0.05 eAED:0.05 QI:0|0.9|0.81|1|0.9|0.90|11|212|619 NbS00005610g0215.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.4|0.8|0.75|0.8|5|102|140 NbS00005610g0217.1 protein AED:0.13 eAED:0.15 QI:0|0.8|0.5|1|0.6|0.66|6|0|400 NbS00014310g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.90|1|1|0.72|0.91|12|54|468; (*GB) gi|356543936|ref|XP_003540414.1| (e_value=0.0) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*SWP) sp|Q8TC07|TBC15_HUMAN (e_value=4e-32) TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2;; (*TAIR) AT5G54780.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432;; (*ITAG) Solyc10g006440.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1046336-1054965 transcript_region:SL2.40ch10:1046336..1054965+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00014310g0002.1 protein AED:0.33 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|148; (*GB) gi|224117466|ref|XP_002317581.1| (e_value=7e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g006430.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:1040838-1042352 transcript_region:SL2.40ch10:1040838..1042352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013341g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|1|0.66|0.5|4|455|521; (*GB) gi|225432666|ref|XP_002282465.1| (e_value=0.0) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*TAIR) AT3G22440.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr3:7959854-7961886 FORWARD LENGTH=532;; (*ITAG) Solyc09g076050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63235327-63238938 transcript_region:SL2.40ch09:63235327..63238938+ functional_description:"FRIGIDA (Fragment) (AHRD V1 *--- B0Z034_ARALP); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00013341g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|339; (*GB) gi|225432472|ref|XP_002277316.1| (e_value=9e-179) PREDICTED: S-adenosylmethionine decarboxylase proenzyme [Vitis vinifera];; (*SWP) sp|Q9AXE3|DCAM_DAUCA (e_value=2e-80) S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1;; (*TAIR) AT5G18930.1 (e_value=4e-140) | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarboxylase family protein | chr5:6312172-6313215 REVERSE LENGTH=347;; (*ITAG) Solyc01g080380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72135850-72136949 transcript_region:SL2.40ch01:72135850..72136949+ go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00013341g0012.1 protein AED:0.21 eAED:0.24 QI:0|0|0|0.83|0|0|6|0|524; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-46) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00000896g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|1|1|4|0|673; (*GB) gi|359488622|ref|XP_003633791.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257639 [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-15) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT3G01750.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:270615-272691 FORWARD LENGTH=664;; (*ITAG) Solyc03g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60385-67905 transcript_region:SL2.40ch03:60385..67905- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 *-*- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00050430g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|258; (*GB) gi|4239765|emb|CAA06927.1| (e_value=2e-170) putative thaumatin-like protein precursor [Nicotiana tabacum];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=5e-81) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G38670.3 (e_value=7e-119) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18069856-18071227 REVERSE LENGTH=281;; (*ITAG) Solyc01g111320.2.1 (e_value=6e-156) genomic_reference:SL2.40ch01 gene_region:89365944-89369680 transcript_region:SL2.40ch01:89365944..89369680+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00049359g0006.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.5|1|0.66|0.5|4|0|629; (*GB) gi|83281193|dbj|BAD15110.2| (e_value=0.0) similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum];; (*SWP) sp|Q2R1U4|CK5P1_ORYSJ (e_value=0.0) CDK5RAP1-like protein OS=Oryza sativa subsp. japonica GN=Os11g0592800 PE=2 SV=1;; (*TAIR) AT4G36390.1 (e_value=0.0) | Symbols: | Methylthiotransferase | chr4:17194746-17197054 REVERSE LENGTH=640;; (*ITAG) Solyc02g084750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42428791-42433753 transcript_region:SL2.40ch02:42428791..42433753- go_terms:GO:0042808 functional_description:"(Dimethylallyl)adenosine tRNA methylthiotransferase miaB (AHRD V1 ***- MIAB_SALRD); contains Interpro domain(s) IPR006463 tRNA-i(6)A37 modification enzyme MiaB "; GO:0042808 NbS00014730g0004.1 protein AED:0.25 eAED:0.25 QI:196|0.94|0.85|1|0.94|0.95|20|298|625; (*GB) gi|186531286|ref|NP_001119415.1| (e_value=0.0) K(+) efflux antiporter 5 [Arabidopsis thaliana];; (*SWP) sp|Q8VYR9|KEA5_ARATH (e_value=0.0) K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1;; (*TAIR) AT5G51710.2 (e_value=0.0) | Symbols: KEA5, ATKEA5 | K+ efflux antiporter 5 | chr5:21004566-21008580 REVERSE LENGTH=565;; (*ITAG) Solyc03g007040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1576117-1584265 transcript_region:SL2.40ch03:1576117..1584265+ go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 **** Q8PYD0_METMA); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00048484g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|61; (*GB) gi|350536791|ref|NP_001234777.1| (e_value=3e-36) ACI14 protein [Solanum lycopersicum];; (*TAIR) AT3G09970.1 (e_value=2e-27) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:3063813-3065337 FORWARD LENGTH=309;; (*ITAG) Solyc09g009170.2.1 (e_value=3e-39) genomic_reference:SL2.40ch09 gene_region:2498781-2502185 transcript_region:SL2.40ch09:2498781..2502185+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase family protein (AHRD V1 **-* Q5LN54_SILPO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0004722 NbS00048484g0001.1 protein AED:0.42 eAED:1.00 QI:58|0|0|0.5|1|0.5|2|0|42 NbS00048484g0003.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|0|0|2|0|100; (*GB) gi|350536791|ref|NP_001234777.1| (e_value=4e-51) ACI14 protein [Solanum lycopersicum];; (*TAIR) AT3G09970.1 (e_value=4e-46) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:3063813-3065337 FORWARD LENGTH=309;; (*ITAG) Solyc09g009170.2.1 (e_value=9e-54) genomic_reference:SL2.40ch09 gene_region:2498781-2502185 transcript_region:SL2.40ch09:2498781..2502185+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase family protein (AHRD V1 **-* Q5LN54_SILPO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0004722 NbS00008237g0002.1 protein AED:0.25 eAED:0.26 QI:395|0.77|0.67|1|0.96|0.96|28|554|1239; (*GB) gi|359493020|ref|XP_002264907.2| (e_value=0.0) PREDICTED: histidinol dehydrogenase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C5U8|HISX_ARATH (e_value=0.0) Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HDH PE=2 SV=1;; (*TAIR) AT5G63890.1 (e_value=0.0) | Symbols: ATHDH, HISN8, HDH | histidinol dehydrogenase | chr5:25565600-25567879 REVERSE LENGTH=452;; (*ITAG) Solyc02g071890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35843032-35848958 transcript_region:SL2.40ch02:35843032..35848958+ go_terms:GO:0004399 functional_description:"Histidinol dehydrogenase (AHRD V1 **** B9GH07_POPTR); contains Interpro domain(s) IPR012131 Histidinol dehydrogenase, prokaryotic-type "; GO:0004399 NbS00032616g0005.1 protein AED:0.13 eAED:0.13 QI:38|1|1|1|0.5|0.66|3|51|184; (*GB) gi|297738229|emb|CBI27430.3| (e_value=3e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81755|PER48_ARATH (e_value=5e-38) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT1G05260.1 (e_value=8e-36) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc02g085930.2.1 (e_value=5e-82) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00032616g0006.1 protein AED:0.26 eAED:0.26 QI:12|0.84|0.78|1|0.53|0.64|14|0|445; (*GB) gi|238886091|gb|ACR77527.1| (e_value=0.0) heterotrimeric GTP-binding protein subunit alpha [Nicotiana benthamiana];; (*SWP) sp|P93564|GPA1_SOLTU (e_value=0.0) Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum tuberosum GN=GPA1 PE=2 SV=1;; (*TAIR) AT2G26300.1 (e_value=0.0) | Symbols: GPA1, GP ALPHA 1, ATGPA1 | G protein alpha subunit 1 | chr2:11198087-11200822 FORWARD LENGTH=383;; (*ITAG) Solyc08g061220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45409864-45419016 transcript_region:SL2.40ch08:45409864..45419016- go_terms:GO:0003924 functional_description:"G protein alpha subunit 3 (AHRD V1 ***- Q8VZX1_SOLTU); contains Interpro domain(s) IPR002976 Plant G-protein, alpha subunit "; GO:0003924 NbS00000535g0014.1 protein AED:0.05 eAED:0.05 QI:405|1|1|1|1|1|2|253|251; (*GB) gi|4138262|emb|CAA69353.1| (e_value=4e-174) aquaporin 1 [Nicotiana tabacum];; (*SWP) sp|P25818|TIP11_ARATH (e_value=8e-135) Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1;; (*TAIR) AT2G36830.1 (e_value=6e-136) | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251;; (*ITAG) Solyc06g074820.2.1 (e_value=5e-161) genomic_reference:SL2.40ch06 gene_region:42747475-42749825 transcript_region:SL2.40ch06:42747475..42749825+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- D1M6Z5_CAPAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00000535g0015.1 protein AED:0.27 eAED:0.30 QI:0|0.27|0.16|0.91|0.54|0.33|12|0|1242; (*GB) gi|255565473|ref|XP_002523727.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|A1A4J7|SMG8_BOVIN (e_value=2e-23) Protein SMG8 OS=Bos taurus GN=SMG8 PE=2 SV=2;; (*ITAG) Solyc06g074810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42732547-42739779 transcript_region:SL2.40ch06:42732547..42739779+ functional_description:"Protein SMG8 (AHRD V1 *-*- SMG8_HUMAN); contains Interpro domain(s) IPR019354 Protein of unknown function DUF2146 "; NbS00000535g0006.1 protein AED:0.63 eAED:0.66 QI:0|-1|0|1|-1|1|1|0|157 NbS00029616g0005.1 protein AED:0.13 eAED:0.13 QI:54|0.5|0.33|1|0.5|0.66|3|0|227; (*GB) gi|297800698|ref|XP_002868233.1| (e_value=4e-34) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G37520.1 (e_value=1e-36) | Symbols: | Protein of Unknown Function (DUF239) | chr5:14902670-14904211 FORWARD LENGTH=199;; (*ITAG) Solyc08g080840.1.1 (e_value=5e-95) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:61192691-61194635 transcript_region:SL2.40ch08:61192691..61194635+ functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00047560g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|1|1|5|0|449; (*GB) gi|255573543|ref|XP_002527696.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=1e-97) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G56140.1 (e_value=8e-99) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:21001708-21007725 REVERSE LENGTH=1033;; (*ITAG) Solyc07g006940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1773524-1775074 transcript_region:SL2.40ch07:1773524..1775074+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor-like serine/threonine kinase (AHRD V1 **** C6FF81_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00053866g0004.1 protein AED:0.08 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|255540875|ref|XP_002511502.1| (e_value=4e-33) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=9e-33) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=7e-34) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc02g087570.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44545431-44545802 transcript_region:SL2.40ch02:44545431..44545802- go_terms:GO:0005515 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00053866g0006.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|376; (*GB) gi|224080015|ref|XP_002305991.1| (e_value=7e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT1G27100.1 (e_value=3e-52) | Symbols: | Actin cross-linking protein | chr1:9407557-9411074 REVERSE LENGTH=519;; (*ITAG) Solyc02g087580.2.1 (e_value=2e-79) genomic_reference:SL2.40ch02 gene_region:44548500-44552413 transcript_region:SL2.40ch02:44548500..44552413+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 *--- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00012759g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=9e-54) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=3e-25) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc03g032230.1.1 (e_value=5e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9028748-9029764 transcript_region:SL2.40ch03:9028748..9029764+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00033563g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.88|0.7|1|0.77|0.7|10|334|257; (*GB) gi|224079329|ref|XP_002305823.1| (e_value=2e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M5P4|CRS2_MAIZE (e_value=3e-117) Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1;; (*TAIR) AT5G16140.2 (e_value=9e-115) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:5270308-5271517 REVERSE LENGTH=240;; (*ITAG) Solyc02g086150.2.1 (e_value=2e-90) genomic_reference:SL2.40ch02 gene_region:43481159-43484960 transcript_region:SL2.40ch02:43481159..43484960- go_terms:GO:0005515,GO:0004045 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 **** D7M817_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515,GO:0004045 NbS00033563g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|169; (*GB) gi|147799839|emb|CAN61843.1| (e_value=2e-46) hypothetical protein VITISV_004818 [Vitis vinifera];; (*TAIR) AT5G38300.1 (e_value=3e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15306022-15306813 FORWARD LENGTH=263;; (*ITAG) Solyc02g086140.1.1 (e_value=1e-94) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43480007-43480693 transcript_region:SL2.40ch02:43480007..43480693- functional_description:"Genomic DNA chromosome 5 P1 clone MSI17 (AHRD V1 ***- Q9FKN3_ARATH)"; NbS00033563g0005.1 protein AED:0.15 eAED:0.16 QI:0|0.4|0.16|1|1|1|6|0|1035; (*GB) gi|255580976|ref|XP_002531306.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G67040.1 (e_value=4e-70) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25019105-25021922 REVERSE LENGTH=826;; (*ITAG) Solyc02g086130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43474986-43479696 transcript_region:SL2.40ch02:43474986..43479696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007454g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|224077620|ref|XP_002305331.1| (e_value=4e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=3e-24) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G24840.1 (e_value=2e-25) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc04g056740.1.1 (e_value=1e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00001269g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|342; (*GB) gi|253796154|gb|ACT35693.1| (e_value=0.0) WD-repeat protein [Nicotiana tabacum];; (*SWP) sp|Q9XGN1|TTG1_ARATH (e_value=0.0) Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1;; (*TAIR) AT5G24520.2 (e_value=0.0) | Symbols: TTG1, TTG | Transducin/WD40 repeat-like superfamily protein | chr5:8371708-8372733 REVERSE LENGTH=341;; (*ITAG) Solyc03g097340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53095076-53096104 transcript_region:SL2.40ch03:53095076..53096104+ functional_description:"WD-repeat protein (AHRD V1 **-- C7EAF4_TOBAC); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00001269g0011.1 protein AED:0.22 eAED:0.22 QI:184|0.66|0.75|1|1|1|4|0|284; (*GB) gi|350540006|ref|NP_001233840.1| (e_value=0.0) flavonoid biosynthesis oxidoreductase protein [Solanum lycopersicum];; (*SWP) sp|Q7XZQ7|FL3H_PETCR (e_value=3e-54) Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1;; (*TAIR) AT5G24530.1 (e_value=1e-141) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc03g080190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45625441-45630380 transcript_region:SL2.40ch03:45625441..45630380- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase-like protein (AHRD V1 **-- Q9FLV0_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00001269g0013.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|289; (*GB) gi|54261828|gb|AAV31178.1| (e_value=2e-39) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=6e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00001269g0012.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0|0|2|0|102 NbS00046907g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|225451096|ref|XP_002265878.1| (e_value=2e-66) PREDICTED: histone H2AX [Vitis vinifera];; (*SWP) sp|O65759|H2AX_CICAR (e_value=2e-67) Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1;; (*TAIR) AT1G54690.1 (e_value=4e-65) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142;; (*ITAG) Solyc09g074300.1.1 (e_value=8e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:61585603-61586031 transcript_region:SL2.40ch09:61585603..61586031+ go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- B9REZ0_RICCO); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00046907g0004.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0|0|3|0|157; (*GB) gi|255569825|ref|XP_002525876.1| (e_value=4e-29) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*ITAG) Solyc07g055640.1.1 (e_value=5e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60920505-60927117 transcript_region:SL2.40ch07:60920505..60927117+ go_terms:GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 *-*- B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00036914g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0.33|1|0|0|3|237|192; (*GB) gi|225448408|ref|XP_002273406.1| (e_value=3e-55) PREDICTED: uncharacterized protein LOC100257064 isoform 1 [Vitis vinifera];; (*TAIR) AT2G40095.1 (e_value=1e-51) | Symbols: | Alpha/beta hydrolase related protein | chr2:16743107-16744455 FORWARD LENGTH=209;; (*ITAG) Solyc05g052750.2.1 (e_value=4e-64) genomic_reference:SL2.40ch05 gene_region:62084392-62086301 transcript_region:SL2.40ch05:62084392..62086301- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KX74_ARALY)"; NbS00024608g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.2|0.8|0.75|0.8|5|0|1224; (*GB) gi|359473398|ref|XP_002268324.2| (e_value=0.0) PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Vitis vinifera];; (*SWP) sp|O23530|SNC1_ARATH (e_value=4e-91) Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3;; (*TAIR) AT1G27170.1 (e_value=0.0) | Symbols: | transmembrane receptors;ATP binding | chr1:9434718-9439219 FORWARD LENGTH=1384;; (*ITAG) Solyc05g006630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1281455-1291211 transcript_region:SL2.40ch05:1281455..1291211+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 NbS00037682g0006.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|1|1|2|0|73; (*GB) gi|357492363|ref|XP_003616470.1| (e_value=2e-21) hypothetical protein MTR_5g080700 [Medicago truncatula];; (*TAIR) AT3G14900.1 (e_value=4e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). | chr3:5013442-5015277 REVERSE LENGTH=611;; (*ITAG) Solyc07g062440.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62405910-62407700 transcript_region:SL2.40ch07:62405910..62407700- functional_description:"Genomic DNA chromosome 3 TAC clone K15M2 (AHRD V1 ***- Q9LKB4_ARATH)"; NbS00037682g0007.1 protein AED:0.16 eAED:0.20 QI:0|0|0|1|0|0|3|0|482; (*GB) gi|302142894|emb|CBI20189.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G14900.1 (e_value=7e-151) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). | chr3:5013442-5015277 REVERSE LENGTH=611;; (*ITAG) Solyc07g062440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62405910-62407700 transcript_region:SL2.40ch07:62405910..62407700- functional_description:"Genomic DNA chromosome 3 TAC clone K15M2 (AHRD V1 ***- Q9LKB4_ARATH)"; NbS00027101g0004.1 protein AED:0.34 eAED:0.34 QI:115|1|0.66|1|0.5|0.66|3|0|248; (*GB) gi|225441313|ref|XP_002275793.1| (e_value=2e-130) PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Vitis vinifera];; (*SWP) sp|Q7JUR6|GDAP2_DROME (e_value=4e-13) Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1;; (*TAIR) AT3G10210.1 (e_value=4e-114) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:3160416-3161579 REVERSE LENGTH=237;; (*ITAG) Solyc04g040200.2.1 (e_value=2e-150) genomic_reference:SL2.40ch04 gene_region:31105832-31110158 transcript_region:SL2.40ch04:31105832..31110158+ functional_description:"Cellular retinaldehyde-binding/triple function C-terminal (AHRD V1 **-- Q2HW59_MEDTR); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00047129g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.5|1|1|1|6|0|428; (*GB) gi|147786897|emb|CAN73299.1| (e_value=1e-104) hypothetical protein VITISV_005183 [Vitis vinifera];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=1e-48) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=1e-49) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc09g097870.2.1 (e_value=2e-141) genomic_reference:SL2.40ch09 gene_region:67134718-67137049 transcript_region:SL2.40ch09:67134718..67137049- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00023835g0004.1 protein AED:0.55 eAED:0.60 QI:0|0.57|0.37|0.75|0.85|1|8|0|225; (*GB) gi|225449633|ref|XP_002284256.1| (e_value=2e-97) PREDICTED: putative oxygen evolving enhancer protein [Vitis vinifera];; (*SWP) sp|P82538|PPL1_ARATH (e_value=2e-84) PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1;; (*TAIR) AT3G55330.1 (e_value=2e-85) | Symbols: PPL1 | PsbP-like protein 1 | chr3:20514031-20515275 REVERSE LENGTH=230;; (*ITAG) Solyc03g114930.2.1 (e_value=2e-109) genomic_reference:SL2.40ch03 gene_region:58838128-58843252 transcript_region:SL2.40ch03:58838128..58843252+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- A0ZMM6_NODSP); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00053280g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|350538997|ref|NP_001234113.1| (e_value=9e-13) uncharacterized protein LOC778318 precursor [Solanum lycopersicum];; (*ITAG) Solyc08g008290.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:2717877-2720127 transcript_region:SL2.40ch08:2717877..2720127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053280g0002.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|1|1|5|0|484; (*GB) gi|255537765|ref|XP_002509949.1| (e_value=0.0) Polygalacturonase precursor, putative [Ricinus communis];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=2e-125) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23820.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12397217-12400050 REVERSE LENGTH=444;; (*ITAG) Solyc08g082170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62196569-62202288 transcript_region:SL2.40ch08:62196569..62202288- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00053280g0004.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|136 NbS00022136g0003.1 protein AED:0.05 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|325; (*GB) gi|225452759|ref|XP_002277734.1| (e_value=2e-94) PREDICTED: uncharacterized protein At5g39865-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=1e-76) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT3G28850.1 (e_value=1e-77) | Symbols: | Glutaredoxin family protein | chr3:10848669-10849955 FORWARD LENGTH=428;; (*ITAG) Solyc02g087850.1.1 (e_value=3e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44693201-44694460 transcript_region:SL2.40ch02:44693201..44694460+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LM49_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00022136g0005.1 protein AED:0.26 eAED:0.26 QI:369|0.6|0.5|1|0.8|0.66|6|0|450; (*GB) gi|296082869|emb|CBI22170.3| (e_value=3e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=2e-46) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G18840.2 (e_value=2e-48) | Symbols: IQD30 | IQ-domain 30 | chr1:6501068-6503435 REVERSE LENGTH=572;; (*ITAG) Solyc02g087760.2.1 (e_value=3e-144) genomic_reference:SL2.40ch02 gene_region:44643248-44648496 transcript_region:SL2.40ch02:44643248..44648496+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6U6R2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00022136g0006.1 protein AED:0.31 eAED:0.31 QI:95|0.66|0.6|0.9|1|1|10|0|334; (*GB) gi|296082881|emb|CBI22182.3| (e_value=8e-132) unnamed protein product [Vitis vinifera];; (*SWP) sp|O26680|DHQS_METTH (e_value=1e-68) 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2;; (*TAIR) AT3G28760.1 (e_value=7e-132) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | chr3:10793126-10795304 REVERSE LENGTH=422;; (*ITAG) Solyc03g058860.2.1 (e_value=3e-174) genomic_reference:SL2.40ch03 gene_region:23704625-23713141 transcript_region:SL2.40ch03:23704625..23713141- functional_description:"3-dehydroquinate synthase (AHRD V1 ***- B4FYZ3_MAIZE); contains Interpro domain(s) IPR002812 3-dehydroquinate synthase, prokaryotic-type "; NbS00022136g0011.1 protein AED:0.60 eAED:0.87 QI:0|0|0|0.5|1|1|4|0|82 NbS00022136g0022.1 protein AED:0.11 eAED:0.11 QI:201|1|1|1|1|1|13|145|516; (*GB) gi|359479910|ref|XP_002267643.2| (e_value=0.0) PREDICTED: beta-glucosidase 11-like [Vitis vinifera];; (*SWP) sp|B3H5Q1|BGL11_ARATH (e_value=0.0) Beta-glucosidase 11 OS=Arabidopsis thaliana GN=BGLU11 PE=2 SV=2;; (*TAIR) AT1G02850.2 (e_value=0.0) | Symbols: BGLU11 | beta glucosidase 11 | chr1:630569-633085 FORWARD LENGTH=497;; (*ITAG) Solyc09g075060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62378413-62381481 transcript_region:SL2.40ch09:62378413..62381481- go_terms:GO:0004338 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00003994g0001.1 protein AED:0.07 eAED:0.79 QI:0|0|0.5|1|0|0.5|2|108|140; (*ITAG) Solyc02g010650.1.1 (e_value=5e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:4228401-4229783 transcript_region:SL2.40ch02:4228401..4229783- functional_description:"Unknown Protein (AHRD V1)"; NbS00018706g0005.1 protein AED:0.35 eAED:0.35 QI:19|0.71|0.75|1|0.85|0.75|8|0|286; (*GB) gi|355329952|dbj|BAL14275.1| (e_value=1e-156) serine/threonine-protein phosphatase 5 [Nicotiana tabacum];; (*SWP) sp|Q84K11|PPP5_SOLLC (e_value=4e-102) Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1;; (*TAIR) AT2G42810.1 (e_value=9e-143) | Symbols: PAPP5, PP5 | protein phosphatase 5.2 | chr2:17812336-17815896 REVERSE LENGTH=484;; (*ITAG) Solyc07g055860.2.1 (e_value=2e-146) genomic_reference:SL2.40ch07 gene_region:61097390-61107260 transcript_region:SL2.40ch07:61097390..61107260- go_terms:GO:0004722,GO:0019904 functional_description:"Serine/threonine-protein phosphatase 5 (AHRD V1 **** B6TKH0_MAIZE); contains Interpro domain(s) IPR011236 Protein phosphatase 5 "; GO:0004722,GO:0019904 NbS00015466g0011.1 protein AED:0.12 eAED:0.13 QI:0|0.2|0.16|0.66|0.4|0.33|6|0|800; (*GB) gi|225450539|ref|XP_002277347.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=6e-179) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=5e-180) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc01g100790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00015466g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|1|0.5|0.66|3|0|624; (*GB) gi|225450537|ref|XP_002277327.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Vitis vinifera];; (*SWP) sp|Q9FXA9|PPR83_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1;; (*TAIR) AT1G56570.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21195804-21197721 FORWARD LENGTH=611;; (*ITAG) Solyc01g100800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82496013-82497982 transcript_region:SL2.40ch01:82496013..82497982- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB47_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00015466g0012.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|101 NbS00022516g0001.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|0|0|2|620|181; (*GB) gi|255538784|ref|XP_002510457.1| (e_value=8e-117) ATP-dependent peptidase, putative [Ricinus communis];; (*TAIR) AT1G75460.1 (e_value=6e-110) | Symbols: | ATP-dependent protease La (LON) domain protein | chr1:28327986-28328822 FORWARD LENGTH=278;; (*ITAG) Solyc04g080870.1.1 (e_value=7e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:62519519-62519779 transcript_region:SL2.40ch04:62519519..62519779+ functional_description:"Peptidase S16 lon domain protein (AHRD V1 ***- D7E103_NOSA0)"; NbS00022516g0006.1 protein AED:0.21 eAED:0.22 QI:0|0.75|0.6|1|0.75|0.8|5|0|418; (*GB) gi|317106666|dbj|BAJ53169.1| (e_value=0.0) JHL18I08.3 [Jatropha curcas];; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=2e-122) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=0.0) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc04g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62521368-62529607 transcript_region:SL2.40ch04:62521368..62529607- go_terms:GO:0006508,GO:0016020,GO:0008234,GO:0055114 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0016020,GO:0008234,GO:0055114 NbS00040670g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|225448491|ref|XP_002272706.1| (e_value=7e-77) PREDICTED: uncharacterized protein LOC100260493 [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=9e-50) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=8e-53) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc09g011780.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:5070696-5075388 transcript_region:SL2.40ch09:5070696..5075388- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R080_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00038091g0008.1 protein AED:0.25 eAED:0.25 QI:91|1|0.66|1|0|0|3|0|21 NbS00038091g0013.1 protein AED:0.23 eAED:0.27 QI:0|0.42|0.37|0.87|0.57|0.5|8|0|1061; (*GB) gi|15418709|gb|AAG31013.1| (e_value=0.0) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=9e-103) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-59) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc09g098130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00038091g0003.1 protein AED:0.37 eAED:0.37 QI:539|1|0.5|1|0|0|2|0|328; (*GB) gi|15418710|gb|AAG31014.1| (e_value=6e-153) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=6e-74) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46730.1 (e_value=1e-49) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc09g098130.1.1 (e_value=5e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00023941g0003.1 protein AED:0.28 eAED:0.33 QI:0|0.3|0.36|0.90|0.5|0.63|11|0|590; (*GB) gi|225424244|ref|XP_002284457.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-45) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G01480.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:216980-220341 FORWARD LENGTH=567;; (*ITAG) Solyc05g007960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2377588-2388715 transcript_region:SL2.40ch05:2377588..2388715- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 ***- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00005242g0008.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|0.66|3|0|165; (*GB) gi|359492765|ref|XP_002270631.2| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera];; (*SWP) sp|Q9FHW9|GDL90_ARATH (e_value=5e-19) GDSL esterase/lipase At5g42170 OS=Arabidopsis thaliana GN=At5g42170/At5g42160 PE=3 SV=2;; (*TAIR) AT5G42170.1 (e_value=4e-20) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:16848786-16851707 FORWARD LENGTH=369;; (*ITAG) Solyc04g081770.2.1 (e_value=8e-32) genomic_reference:SL2.40ch04 gene_region:63283322-63285545 transcript_region:SL2.40ch04:63283322..63285545+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00005242g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0.5|0.66|3|0|254; (*GB) gi|332429342|gb|AEE69072.1| (e_value=1e-142) expansin-5 [Petunia hybrid cultivar];; (*SWP) sp|O22874|EXPA8_ARATH (e_value=3e-131) Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1;; (*TAIR) AT2G40610.1 (e_value=2e-132) | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 | expansin A8 | chr2:16949121-16950472 REVERSE LENGTH=253;; (*ITAG) Solyc06g049050.2.1 (e_value=3e-132) genomic_reference:SL2.40ch06 gene_region:28822198-28823964 transcript_region:SL2.40ch06:28822198..28823964+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- O82625_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00012578g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|224101867|ref|XP_002312451.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G14890.1 (e_value=7e-17) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:5137045-5137704 FORWARD LENGTH=219;; (*ITAG) Solyc10g076730.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00037462g0004.1 protein AED:0.18 eAED:0.18 QI:35|0.87|0.88|1|1|0.88|9|265|491; (*GB) gi|225436405|ref|XP_002271797.1| (e_value=0.0) PREDICTED: lysosomal Pro-X carboxypeptidase [Vitis vinifera];; (*SWP) sp|Q5RBU7|PCP_PONAB (e_value=5e-97) Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1;; (*TAIR) AT5G22860.1 (e_value=0.0) | Symbols: | Serine carboxypeptidase S28 family protein | chr5:7639511-7642945 REVERSE LENGTH=502;; (*ITAG) Solyc11g066590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49446302-49452689 transcript_region:SL2.40ch11:49446302..49452689+ go_terms:GO:0006508 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-- Q9FLH1_ARATH); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0006508 NbS00057301g0004.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0.33|1|0|0.66|3|0|130; (*GB) gi|224067608|ref|XP_002302513.1| (e_value=1e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G60520.1 (e_value=9e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22361751-22362467 REVERSE LENGTH=129;; (*ITAG) Solyc01g090740.2.1 (e_value=6e-51) genomic_reference:SL2.40ch01 gene_region:76141602-76142995 transcript_region:SL2.40ch01:76141602..76142995- functional_description:"Zinc ion binding protein (AHRD V1 ***- D7LRR6_ARALY)"; NbS00018953g0013.1 protein AED:0.02 eAED:0.03 QI:0|0.83|0.71|1|0.33|0.28|7|287|406; (*GB) gi|359485671|ref|XP_002274384.2| (e_value=7e-124) PREDICTED: putative zinc finger protein CONSTANS-LIKE 11-like [Vitis vinifera];; (*SWP) sp|Q9LJ44|COL12_ARATH (e_value=5e-91) Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2;; (*TAIR) AT3G21880.1 (e_value=4e-92) | Symbols: | B-box type zinc finger protein with CCT domain | chr3:7706748-7708093 FORWARD LENGTH=364;; (*ITAG) Solyc05g046040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:57316966-57319191 transcript_region:SL2.40ch05:57316966..57319191+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00018953g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.57|1|0.66|0.85|7|0|927; (*GB) gi|356892154|gb|AET41696.1| (e_value=0.0) formin [Solanum lycopersicum];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=0.0) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=0.0) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc05g046120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:57402599-57408915 transcript_region:SL2.40ch05:57402599..57408915+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00018953g0006.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|59 NbS00002468g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|225438619|ref|XP_002281037.1| (e_value=2e-50) PREDICTED: 60S ribosomal protein L30 [Vitis vinifera];; (*SWP) sp|O49884|RL30_LUPLU (e_value=2e-49) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G77940.1 (e_value=6e-48) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:29304116-29305288 REVERSE LENGTH=112;; (*ITAG) Solyc04g072660.2.1 (e_value=2e-52) genomic_reference:SL2.40ch04 gene_region:57219626-57221412 transcript_region:SL2.40ch04:57219626..57221412- go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00002468g0109.1 protein AED:0.39 eAED:0.40 QI:172|0.5|0.6|1|0.25|0.4|5|515|152 NbS00002468g0105.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.2|1|1|5|0|167 NbS00001471g0009.1 protein AED:0.21 eAED:0.22 QI:0|0.87|0.77|1|1|1|9|428|607; (*GB) gi|356555871|ref|XP_003546253.1| (e_value=0.0) PREDICTED: lysosomal beta glucosidase-like [Glycine max];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=6e-56) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G04885.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc01g097000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79740438-79746490 transcript_region:SL2.40ch01:79740438..79746490+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00001471g0010.1 protein AED:0.26 eAED:0.28 QI:4|1|0.83|1|0.8|1|6|572|498; (*GB) gi|255561873|ref|XP_002521945.1| (e_value=0.0) Poly(rC)-binding protein, putative [Ricinus communis];; (*SWP) sp|O19048|PCBP1_RABIT (e_value=5e-18) Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1;; (*TAIR) AT3G04610.1 (e_value=9e-162) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc01g097010.2.1 (e_value=6e-179) genomic_reference:SL2.40ch01 gene_region:79734182-79760765 transcript_region:SL2.40ch01:79734182..79760765+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00017951g0015.1 protein AED:0.00 eAED:0.00 QI:265|1|0.5|1|1|1|2|0|425; (*GB) gi|255538576|ref|XP_002510353.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G19360.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:6690672-6692211 REVERSE LENGTH=428;; (*ITAG) Solyc04g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61956665-61959216 transcript_region:SL2.40ch04:61956665..61959216- go_terms:GO:0005783 functional_description:"Glycosyltransferase family 77 protein (AHRD V1 ***- C1N277_MICPS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00017951g0014.1 protein AED:0.05 eAED:0.05 QI:497|0.83|0.85|1|0.33|0.28|7|383|543; (*GB) gi|225458346|ref|XP_002281672.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=0.0) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g089090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62655918-62659826 transcript_region:SL2.40ch12:62655918..62659826- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00017951g0010.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|193; (*ITAG) Solyc01g058710.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:60769677-60771321 transcript_region:SL2.40ch01:60769677..60771321+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017951g0016.1 protein AED:0.35 eAED:0.36 QI:0|0.5|0.33|1|0.5|0.33|3|0|327; (*GB) gi|359485666|ref|XP_002273999.2| (e_value=8e-151) PREDICTED: APO protein 4, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LSZ0|APO4_ARATH (e_value=2e-127) APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2;; (*TAIR) AT3G21740.1 (e_value=1e-128) | Symbols: APO4 | Arabidopsis thaliana protein of unknown function (DUF794) | chr3:7662542-7663638 REVERSE LENGTH=337;; (*ITAG) Solyc04g080060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61950021-61953775 transcript_region:SL2.40ch04:61950021..61953775+ functional_description:"APO protein 4, mitochondrial (AHRD V1 ***- APO4_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00009164g0009.1 protein AED:0.14 eAED:0.14 QI:134|0.8|0.83|1|0.6|0.5|6|370|159; (*GB) gi|10799832|emb|CAC12883.1| (e_value=7e-100) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42794|RL112_ARATH (e_value=1e-97) 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2;; (*TAIR) AT5G45775.2 (e_value=1e-98) | Symbols: | Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=1e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00009164g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0.88|1|1|1|9|260|314; (*GB) gi|297734962|emb|CBI17196.3| (e_value=9e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G20070.2 (e_value=2e-49) | Symbols: TTN9 | titan9 | chr3:7004950-7006625 REVERSE LENGTH=282;; (*ITAG) Solyc02g086250.2.1 (e_value=1e-128) genomic_reference:SL2.40ch02 gene_region:43545452-43550151 transcript_region:SL2.40ch02:43545452..43550151- functional_description:"Genomic DNA chromosome 3 P1 clone MAL21 (AHRD V1 ***- Q9LJZ4_ARATH)"; NbS00002810g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.81|0.58|0.91|0.72|0.83|12|0|1674; (*GB) gi|359479822|ref|XP_002269412.2| (e_value=8e-147) PREDICTED: uncharacterized protein LOC100254466 [Vitis vinifera];; (*TAIR) AT3G62900.1 (e_value=6e-82) | Symbols: | CW-type Zinc Finger | chr3:23248868-23254810 REVERSE LENGTH=1465;; (*ITAG) Solyc09g074670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61989394-61999166 transcript_region:SL2.40ch09:61989394..61999166+ go_terms:GO:0008270 functional_description:"CW-type Zinc Finger family protein expressed (AHRD V1 *-*- Q10LI9_ORYSJ); contains Interpro domain(s) IPR011124 Zinc finger, CW-type "; GO:0008270 NbS00002810g0003.1 protein AED:0.26 eAED:0.26 QI:1029|0.64|0.8|0.93|0.92|0.86|15|304|499; (*GB) gi|34481801|emb|CAC87836.1| (e_value=0.0) cullin 1B [Nicotiana tabacum];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc09g074680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62001464-62009086 transcript_region:SL2.40ch09:62001464..62009086- go_terms:GO:0030332,GO:0004842 functional_description:"Cullin 1B (AHRD V1 ***- Q711G7_TOBAC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332,GO:0004842 NbS00047657g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|157; (*GB) gi|388512267|gb|AFK44195.1| (e_value=2e-41) unknown [Medicago truncatula];; (*SWP) sp|Q5N2J3|TATA_SYNP6 (e_value=1e-18) Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1;; (*TAIR) AT5G28750.1 (e_value=5e-33) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=3e-53) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00047657g0011.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|334|162; (*GB) gi|388501348|gb|AFK38740.1| (e_value=1e-61) unknown [Medicago truncatula];; (*SWP) sp|Q9M4B5|PFD4_ARATH (e_value=3e-57) Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1 SV=3;; (*TAIR) AT1G08780.1 (e_value=2e-58) | Symbols: AIP3, PFD4 | ABI3-interacting protein 3 | chr1:2809925-2811126 REVERSE LENGTH=129;; (*ITAG) Solyc01g097300.2.1 (e_value=2e-72) genomic_reference:SL2.40ch01 gene_region:79961873-79966303 transcript_region:SL2.40ch01:79961873..79966303+ go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 4 (AHRD V1 ***- B6SLQ1_MAIZE); contains Interpro domain(s) IPR016661 Prefoldin, subunit 4 "; GO:0015631,GO:0051087 NbS00037061g0011.1 protein AED:0.26 eAED:0.26 QI:279|1|1|1|0.83|0.71|7|614|179; (*GB) gi|224126375|ref|XP_002329538.1| (e_value=7e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|O80501|RAH1B_ARATH (e_value=4e-115) Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1;; (*TAIR) AT2G44610.1 (e_value=3e-116) | Symbols: RAB6, ATRABH1B, ATRAB6A, RAB6A | Ras-related small GTP-binding family protein | chr2:18411778-18413883 REVERSE LENGTH=208;; (*ITAG) Solyc01g088560.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:75096820-75102455 transcript_region:SL2.40ch01:75096820..75102455- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-6A (AHRD V1 ***- B6STE7_MAIZE); contains Interpro domain(s) IPR015600 Rab6-related "; GO:0003924 NbS00037061g0009.1 protein AED:0.01 eAED:0.01 QI:118|1|1|1|1|1|2|629|124; (*GB) gi|255571105|ref|XP_002526503.1| (e_value=1e-55) acyl carrier protein, putative [Ricinus communis];; (*SWP) sp|P53665|ACPM1_ARATH (e_value=2e-56) Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1;; (*TAIR) AT2G44620.1 (e_value=1e-57) | Symbols: MTACP-1, MTACP1 | mitochondrial acyl carrier protein 1 | chr2:18414320-18415065 FORWARD LENGTH=122;; (*ITAG) Solyc01g088570.2.1 (e_value=3e-80) genomic_reference:SL2.40ch01 gene_region:75108128-75111768 transcript_region:SL2.40ch01:75108128..75111768+ go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- B9SKH3_RICCO); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00038205g0008.1 protein AED:0.01 eAED:0.01 QI:350|1|1|1|1|1|2|111|134; (*GB) gi|388502126|gb|AFK39129.1| (e_value=8e-43) unknown [Lotus japonicus];; (*SWP) sp|Q41387|PSBW_SPIOL (e_value=2e-38) Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1;; (*TAIR) AT2G30570.1 (e_value=7e-39) | Symbols: PSBW | photosystem II reaction center W | chr2:13019326-13020053 REVERSE LENGTH=133;; (*ITAG) Solyc06g084050.2.1 (e_value=2e-42) genomic_reference:SL2.40ch06 gene_region:45606674-45608051 transcript_region:SL2.40ch06:45606674..45608051+ go_terms:GO:0009523 functional_description:"Photosystem II reaction center W protein (AHRD V1 ***- B6TMB3_MAIZE); contains Interpro domain(s) IPR009806 Photosystem II protein PsbW, class 2 "; GO:0009523 NbS00038205g0009.1 protein AED:0.53 eAED:0.53 QI:0|1|0|1|1|1|3|0|144; (*GB) gi|255559943|ref|XP_002520990.1| (e_value=7e-66) RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis];; (*SWP) sp|B8AJT9|MRS2I_ORYSI (e_value=7e-56) Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1;; (*TAIR) AT5G64560.2 (e_value=2e-53) | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transporter 9 | chr5:25807163-25809395 REVERSE LENGTH=378;; (*ITAG) Solyc09g065920.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:59804797-59809555 transcript_region:SL2.40ch09:59804797..59809555+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-I (AHRD V1 **** MRS2I_ORYSJ); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00038205g0010.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|129 NbS00032426g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0.5|0.66|3|0|354; (*GB) gi|356522218|ref|XP_003529744.1| (e_value=3e-106) PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Glycine max];; (*SWP) sp|O65924|Y2921_ARATH (e_value=1e-90) Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=2 SV=1;; (*TAIR) AT4G29990.1 (e_value=1e-97) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr4:14665802-14669438 REVERSE LENGTH=876;; (*ITAG) Solyc06g062450.2.1 (e_value=9e-163) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00057491g0004.1 protein AED:0.27 eAED:0.27 QI:169|0.81|0.88|1|0.68|0.76|17|324|815; (*GB) gi|359482963|ref|XP_003632867.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=2e-109) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT3G14205.1 (e_value=0.0) | Symbols: | Phosphoinositide phosphatase family protein | chr3:4716008-4720524 REVERSE LENGTH=808;; (*ITAG) Solyc03g123520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64397000-64404700 transcript_region:SL2.40ch03:64397000..64404700+ go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- C1H752_PARBA); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00004775g0006.1 protein AED:0.26 eAED:0.35 QI:0|0|0|1|0.33|0.5|4|0|272; (*GB) gi|6630454|gb|AAF19542.1|AC007190_10 (e_value=7e-53) F23N19.18 [Arabidopsis thaliana];; (*SWP) sp|Q8H1H9|AMO_ARATH (e_value=5e-55) Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1;; (*TAIR) AT1G62810.1 (e_value=4e-56) | Symbols: | Copper amine oxidase family protein | chr1:23258253-23261772 REVERSE LENGTH=712;; (*ITAG) Solyc08g079430.2.1 (e_value=1e-47) genomic_reference:SL2.40ch08 gene_region:60120528-60124693 transcript_region:SL2.40ch08:60120528..60124693- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RBR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00004775g0005.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|178; (*GB) gi|255537061|ref|XP_002509597.1| (e_value=9e-60) Amine oxidase [copper-containing] precursor, putative [Ricinus communis];; (*SWP) sp|Q8H1H9|AMO_ARATH (e_value=5e-47) Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1;; (*TAIR) AT1G62810.1 (e_value=4e-48) | Symbols: | Copper amine oxidase family protein | chr1:23258253-23261772 REVERSE LENGTH=712;; (*ITAG) Solyc08g079430.2.1 (e_value=4e-38) genomic_reference:SL2.40ch08 gene_region:60120528-60124693 transcript_region:SL2.40ch08:60120528..60124693- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RBR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbC24322870g0002.1 protein AED:0.28 eAED:0.28 QI:6|1|0.5|1|1|1|2|0|88; (*GB) gi|225425084|ref|XP_002273586.1| (e_value=1e-50) PREDICTED: uncharacterized protein LOC100249627 [Vitis vinifera];; (*SWP) sp|Q27294|CAZ_DROME (e_value=4e-21) RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2 SV=2;; (*TAIR) AT1G50300.1 (e_value=8e-43) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372;; (*ITAG) Solyc11g040050.1.1 (e_value=2e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28386181-28389979 transcript_region:SL2.40ch11:28386181..28389979- go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B8C201_THAPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003723 NbC26122552g0003.1 protein AED:0.10 eAED:0.10 QI:364|1|1|1|0.66|0.5|4|411|402; (*GB) gi|225469244|ref|XP_002266092.1| (e_value=1e-172) PREDICTED: sister chromatid cohesion protein DCC1-like [Vitis vinifera];; (*SWP) sp|Q6GL75|DCC1_XENTR (e_value=7e-42) Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis GN=dscc1 PE=2 SV=1;; (*TAIR) AT2G44580.1 (e_value=5e-156) | Symbols: | zinc ion binding | chr2:18402081-18403412 REVERSE LENGTH=386;; (*ITAG) Solyc01g088390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74923808-74925676 transcript_region:SL2.40ch01:74923808..74925676- go_terms:GO:0005515 functional_description:"Sister chromatid cohesion protein DCC1 (AHRD V1 ***- B5XCA8_SALSA); contains Interpro domain(s) IPR019128 Sister chromatid cohesion protein DCC1 "; GO:0005515 NbS00022234g0018.1 protein AED:0.00 eAED:0.00 QI:11|1|1|1|1|1|2|118|69; (*ITAG) Solyc12g099270.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64811996-64815585 transcript_region:SL2.40ch12:64811996..64815585- go_terms:GO:0051536 functional_description:"4Fe-4S ferredoxin iron-sulfur binding (AHRD V1 ***- A2Q2W7_MEDTR); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0051536 NbS00022234g0025.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.73|1|0.64|0.8|15|47|818; (*GB) gi|224108736|ref|XP_002314950.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=2e-108) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=0.0) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc12g099250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00022234g0020.1 protein AED:0.22 eAED:0.22 QI:173|0.94|0.88|1|0.88|0.77|18|11|621; (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=0.0) ATP:citrate lyase [Capsicum annuum];; (*SWP) sp|Q93VT8|ACLB1_ORYSJ (e_value=0.0) ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT5G49460.1 (e_value=0.0) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc12g099260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00022234g0023.1 protein AED:0.29 eAED:0.32 QI:0|0.81|0.75|0.91|0.90|0.83|12|0|332; (*GB) gi|255556388|ref|XP_002519228.1| (e_value=2e-143) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g099270.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64811996-64815585 transcript_region:SL2.40ch12:64811996..64815585- go_terms:GO:0051536 functional_description:"4Fe-4S ferredoxin iron-sulfur binding (AHRD V1 ***- A2Q2W7_MEDTR); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0051536 NbS00049538g0007.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|141; (*GB) gi|45357074|gb|AAS58496.1| (e_value=1e-83) chloroplast ferredoxin I [Nicotiana tabacum];; (*SWP) sp|Q43517|FER1_SOLLC (e_value=2e-78) Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1;; (*TAIR) AT1G60950.1 (e_value=2e-55) | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like superfamily protein | chr1:22444565-22445011 FORWARD LENGTH=148;; (*ITAG) Solyc10g044520.1.1 (e_value=1e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:22136377-22136811 transcript_region:SL2.40ch10:22136377..22136811- go_terms:GO:0005515 functional_description:"Ferredoxin I (AHRD V1 ***- Q93XJ9_SOLTU); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0005515 NbS00049538g0008.1 protein AED:0.21 eAED:0.21 QI:319|1|1|1|0.7|0.63|11|642|479; (*GB) gi|255579669|ref|XP_002530674.1| (e_value=0.0) endomembrane protein emp70, putative [Ricinus communis];; (*SWP) sp|Q9HD45|TM9S3_HUMAN (e_value=4e-161) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2;; (*TAIR) AT1G10950.1 (e_value=0.0) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc10g044480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21983016-21991883 transcript_region:SL2.40ch10:21983016..21991883+ go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00049538g0004.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|225448221|ref|XP_002266144.1| (e_value=7e-28) PREDICTED: MLO16 protein [Vitis vinifera];; (*SWP) sp|O23693|MLO4_ARATH (e_value=2e-19) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=1e-20) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc10g044510.1.1 (e_value=9e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22128868-22135940 transcript_region:SL2.40ch10:22128868..22135940+ go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbC26022389g0004.1 protein AED:0.11 eAED:0.11 QI:333|1|0.8|1|1|0.8|5|0|295; (*GB) gi|255574009|ref|XP_002527922.1| (e_value=3e-129) copper amine oxidase, putative [Ricinus communis];; (*TAIR) AT2G42490.1 (e_value=9e-117) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc05g013440.2.1 (e_value=4e-158) genomic_reference:SL2.40ch05 gene_region:6501962-6511458 transcript_region:SL2.40ch05:6501962..6511458- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00002362g0011.1 protein AED:0.16 eAED:0.16 QI:476|0.43|0.47|0.94|0.56|0.58|17|0|1743; (*GB) gi|225444589|ref|XP_002277309.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267980 [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=2e-39) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT4G33240.3 (e_value=0.0) | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases | chr4:16029504-16037278 REVERSE LENGTH=1753;; (*ITAG) Solyc07g017510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7403047-7425731 transcript_region:SL2.40ch07:7403047..7425731+ go_terms:GO:0016308,GO:0035091 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-* D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0016308,GO:0035091 NbS00002362g0005.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|4|394|484; (*GB) gi|225444597|ref|XP_002274191.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242383 [Vitis vinifera];; (*SWP) sp|Q9URW6|YIE2_SCHPO (e_value=3e-45) SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1;; (*TAIR) AT3G43230.1 (e_value=0.0) | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr3:15207776-15209599 FORWARD LENGTH=485;; (*ITAG) Solyc07g017500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7391210-7395554 transcript_region:SL2.40ch07:7391210..7395554+ go_terms:GO:0008270 functional_description:"Lateral signaling target protein 2 homolog (AHRD V1 *--- LST2_DROWI); contains Interpro domain(s) IPR007461 Ysc84 actin-binding domain "; GO:0008270 NbS00035704g0012.1 protein AED:0.16 eAED:0.16 QI:72|0.5|0.4|1|0.5|0.6|5|0|785; (*GB) gi|12060550|gb|AAG48162.1|AF154425_1 (e_value=0.0) phospholipase D [Solanum lycopersicum];; (*SWP) sp|Q41142|PLDA1_RICCO (e_value=0.0) Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1;; (*TAIR) AT3G15730.1 (e_value=0.0) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc08g066800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52865736-52872224 transcript_region:SL2.40ch08:52865736..52872224+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9FR61_SOLLC); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00035704g0006.1 protein AED:0.33 eAED:0.41 QI:0|0|0|1|1|1|2|0|191; (*GB) gi|54606707|dbj|BAD66730.1| (e_value=8e-17) orf141 [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc01g056950.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00035704g0008.1 protein AED:0.11 eAED:0.11 QI:271|0.62|0.66|1|0.62|0.66|9|517|483; (*GB) gi|225427278|ref|XP_002278878.1| (e_value=4e-99) PREDICTED: BUD13 homolog [Vitis vinifera];; (*SWP) sp|Q8R149|BUD13_MOUSE (e_value=1e-23) BUD13 homolog OS=Mus musculus GN=Bud13 PE=1 SV=1;; (*TAIR) AT1G31870.2 (e_value=1e-90) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11437269-11439821 FORWARD LENGTH=561;; (*ITAG) Solyc03g033950.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:9921419-9926687 transcript_region:SL2.40ch03:9921419..9926687- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor CWC26 (AHRD V1 *--- A8P4C7_COPC7); contains Interpro domain(s) IPR018609 Protein of unknown function DUF2050, pre-mRNA-splicing factor "; GO:0005515 NbS00035704g0007.1 protein AED:0.18 eAED:0.18 QI:201|1|1|1|0.16|0.28|7|439|240; (*GB) gi|357520809|ref|XP_003630693.1| (e_value=7e-137) Derlin-1 [Medicago truncatula];; (*SWP) sp|Q8VZU9|DERL1_ARATH (e_value=2e-129) Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1;; (*TAIR) AT4G29330.1 (e_value=2e-130) | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952 FORWARD LENGTH=266;; (*ITAG) Solyc05g026310.2.1 (e_value=2e-145) genomic_reference:SL2.40ch05 gene_region:40385875-40400417 transcript_region:SL2.40ch05:40385875..40400417- go_terms:GO:0005515 functional_description:"Derlin-3 (AHRD V1 ***- B6U3C7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0005515 NbS00012134g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0|0.75|0.33|0.25|4|0|251; (*GB) gi|357160112|ref|XP_003578661.1| (e_value=5e-66) PREDICTED: GPI mannosyltransferase 1-like [Brachypodium distachyon];; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=7e-62) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1;; (*TAIR) AT5G22130.1 (e_value=6e-63) | Symbols: PNT1 | mannosyltransferase family protein | chr5:7337486-7339831 REVERSE LENGTH=450;; (*ITAG) Solyc02g083260.2.1 (e_value=5e-95) genomic_reference:SL2.40ch02 gene_region:41291406-41294442 transcript_region:SL2.40ch02:41291406..41294442- go_terms:GO:0051751 functional_description:"GPI mannosyltransferase 1 (AHRD V1 **** A8NEB2_COPC7); contains Interpro domain(s) IPR007704 Mannosyltransferase, DXD "; GO:0051751 NbS00012134g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|0.75|1|1|4|0|273; (*GB) gi|296086092|emb|CBI31533.3| (e_value=7e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=4e-30) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=1e-113) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=4e-153) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00003068g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|837; (*GB) gi|359493687|ref|XP_003634651.1| (e_value=0.0) PREDICTED: receptor-like protein kinase THESEUS 1-like [Vitis vinifera];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=0.0) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=0.0) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc10g006870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1295869-1298391 transcript_region:SL2.40ch10:1295869..1298391- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00003068g0023.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0.33|3|0|763; (*GB) gi|359493689|ref|XP_002281860.2| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Vitis vinifera];; (*SWP) sp|Q9LID0|LDL2_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1;; (*TAIR) AT3G13682.1 (e_value=0.0) | Symbols: LDL2 | LSD1-like2 | chr3:4479193-4481509 REVERSE LENGTH=746;; (*ITAG) Solyc07g063450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63154192-63158475 transcript_region:SL2.40ch07:63154192..63158475+ go_terms:GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **-* D7L1H5_ARALY); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0008131 NbS00003068g0018.1 protein AED:0.17 eAED:0.17 QI:92|0.81|0.82|1|0.81|0.88|17|402|588; (*GB) gi|224115062|ref|XP_002316930.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P94479|YNBB_BACSU (e_value=7e-118) Uncharacterized protein ynbB OS=Bacillus subtilis (strain 168) GN=ynbB PE=4 SV=2;; (*ITAG) Solyc07g063510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63199727-63205246 transcript_region:SL2.40ch07:63199727..63205246+ go_terms:GO:0015083 functional_description:"Aluminum resistance protein-like (AHRD V1 **** Q54763_SYNE7); contains Interpro domain(s) IPR009651 Aluminium resistance "; GO:0015083 NbS00003068g0019.1 protein AED:0.22 eAED:0.23 QI:197|0.6|0.66|1|0.4|0.16|6|395|344; (*GB) gi|295824575|gb|ADG37658.1| (e_value=9e-169) DUF300 family protein [Nicotiana tabacum];; (*SWP) sp|Q6ZMB5|T184A_HUMAN (e_value=8e-29) Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1;; (*TAIR) AT1G11200.1 (e_value=2e-113) | Symbols: | Protein of unknown function (DUF300) | chr1:3753896-3755459 FORWARD LENGTH=295;; (*ITAG) Solyc07g063520.2.1 (e_value=1e-144) genomic_reference:SL2.40ch07 gene_region:63209581-63212096 transcript_region:SL2.40ch07:63209581..63212096+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00003068g0026.1 protein AED:0.06 eAED:0.09 QI:0|0.33|0.25|1|0.66|0.75|4|0|365; (*GB) gi|225461342|ref|XP_002284614.1| (e_value=1e-129) PREDICTED: uncharacterized protein LOC100246927 [Vitis vinifera];; (*TAIR) AT5G54370.1 (e_value=1e-101) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:22075334-22076567 FORWARD LENGTH=337;; (*ITAG) Solyc02g078930.1.1 (e_value=1e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38128755-38129867 transcript_region:SL2.40ch02:38128755..38129867- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 ***- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00003068g0027.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|1|0.5|0.33|3|0|214; (*GB) gi|224126749|ref|XP_002319917.1| (e_value=7e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZA8|ULT1_ARATH (e_value=3e-69) Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1;; (*TAIR) AT4G28190.1 (e_value=2e-70) | Symbols: ULT1, ULT | Developmental regulator, ULTRAPETALA | chr4:13985753-13987050 FORWARD LENGTH=237;; (*ITAG) Solyc12g010760.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3676998-3678363 transcript_region:SL2.40ch12:3676998..3678363+ functional_description:"Transcription factor (Fragment) (AHRD V1 ***- D6MKF6_9ASPA)"; NbS00002216g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|177; (*GB) gi|82621168|gb|ABB86272.1| (e_value=8e-55) unknown [Solanum tuberosum];; (*TAIR) AT1G68490.1 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc03g119480.2.1 (e_value=9e-56) genomic_reference:SL2.40ch03 gene_region:62133397-62134846 transcript_region:SL2.40ch03:62133397..62134846+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010783g0001.1 protein AED:0.21 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|350539980|ref|NP_001233831.1| (e_value=3e-144) TCP transcription factor 24 [Solanum lycopersicum];; (*SWP) sp|Q9C758|TCP24_ARATH (e_value=5e-34) Transcription factor TCP24 OS=Arabidopsis thaliana GN=TCP24 PE=1 SV=1;; (*TAIR) AT1G30210.2 (e_value=4e-35) | Symbols: TCP24 | TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 | chr1:10628754-10629728 REVERSE LENGTH=324;; (*ITAG) Solyc08g048390.1.1 (e_value=4e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:39810608-39811771 transcript_region:SL2.40ch08:39810608..39811771+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-** CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00029680g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|359490253|ref|XP_002267680.2| (e_value=7e-175) PREDICTED: probable receptor-like protein kinase At5g39020-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=1e-99) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G67000.1 (e_value=8e-101) | Symbols: | Protein kinase superfamily protein | chr1:25004217-25007604 REVERSE LENGTH=892;; (*ITAG) Solyc02g081500.2.1 (e_value=6e-167) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00029436g0006.1 protein AED:0.16 eAED:0.16 QI:449|0.90|0.83|0.91|0.81|0.75|12|0|1413; (*GB) gi|359486840|ref|XP_002284223.2| (e_value=0.0) PREDICTED: ABC transporter B family member 20-like [Vitis vinifera];; (*SWP) sp|Q9M3B9|AB20B_ARATH (e_value=0.0) ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1;; (*TAIR) AT3G55320.1 (e_value=0.0) | Symbols: PGP20 | P-glycoprotein 20 | chr3:20507391-20513393 REVERSE LENGTH=1408;; (*ITAG) Solyc04g010310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3631081-3639205 transcript_region:SL2.40ch04:3631081..3639205+ go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *-** YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00009866g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|1|1|1|3|0|216; (*GB) gi|224093760|ref|XP_002309980.1| (e_value=6e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XEE2|ANXD2_ARATH (e_value=3e-96) Annexin D2 OS=Arabidopsis thaliana GN=ANN2 PE=2 SV=1;; (*TAIR) AT5G65020.2 (e_value=9e-98) | Symbols: ANNAT2 | annexin 2 | chr5:25974366-25975554 FORWARD LENGTH=302;; (*ITAG) Solyc05g051980.2.1 (e_value=6e-127) genomic_reference:SL2.40ch05 gene_region:61476836-61479133 transcript_region:SL2.40ch05:61476836..61479133- go_terms:GO:0005544 functional_description:"Annexin 2 (AHRD V1 ***- A9X4R2_BRAJU); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00005992g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225444780|ref|XP_002279914.1| (e_value=4e-70) PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera];; (*SWP) sp|Q570U6|EF4L4_ARATH (e_value=7e-54) Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1;; (*TAIR) AT1G17455.2 (e_value=5e-55) | Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997932-5998276 FORWARD LENGTH=114;; (*ITAG) Solyc07g041340.1.1 (e_value=5e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:49758322-49758651 transcript_region:SL2.40ch07:49758322..49758651- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKI7_SOLTU); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00011669g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|77416941|gb|ABA81866.1| (e_value=4e-129) unknown [Solanum tuberosum];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=7e-87) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=5e-88) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc06g082270.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00011669g0001.1 protein AED:0.02 eAED:0.02 QI:437|1|1|1|0.25|0.2|5|256|423; (*GB) gi|225459048|ref|XP_002285633.1| (e_value=6e-123) PREDICTED: uncharacterized protein LOC100264337 [Vitis vinifera];; (*SWP) sp|Q9S7V4|HA22A_ARATH (e_value=5e-19) HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1;; (*TAIR) AT1G74520.1 (e_value=4e-20) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177;; (*ITAG) Solyc04g076610.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:59092281-59095192 transcript_region:SL2.40ch04:59092281..59095192- go_terms:GO:0003676,GO:0004523,GO:0008270,GO:0005622 functional_description:"Receptor expression-enhancing protein 4 (AHRD V1 *--- REEP4_HUMAN); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0003676,GO:0004523,GO:0008270,GO:0005622 NbS00001236g0024.1 protein AED:0.00 eAED:0.00 QI:0|0|0|1|1|1|2|0|794; (*GB) gi|6723683|emb|CAB67120.1| (e_value=0.0) subtilisin-like protease [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g079980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60526887-60529157 transcript_region:SL2.40ch08:60526887..60529157+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001236g0036.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|1|1|10|0|477; (*GB) gi|283837093|emb|CBH19891.1| (e_value=0.0) cell cycle switch 52A [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8L3Z8|FZR2_ARATH (e_value=0.0) Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1;; (*TAIR) AT4G22910.1 (e_value=0.0) | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483;; (*ITAG) Solyc08g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60574341-60578537 transcript_region:SL2.40ch08:60574341..60578537+ go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q9M7I2_MEDTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00001236g0029.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|355; (*GB) gi|392055996|gb|AFM52334.1| (e_value=0.0) anthocyanidin synthase 1 [Nicotiana tabacum];; (*SWP) sp|P51092|LDOX_PETHY (e_value=0.0) Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1;; (*TAIR) AT4G22880.2 (e_value=2e-160) | Symbols: LDOX, TDS4, TT18, ANS | leucoanthocyanidin dioxygenase | chr4:12004905-12006059 REVERSE LENGTH=356;; (*ITAG) Solyc08g080040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60549457-60551317 transcript_region:SL2.40ch08:60549457..60551317- go_terms:GO:0016706 functional_description:"Anthocyanidin synthase (AHRD V1 ***- D3XFG1_THECC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00001236g0010.1 protein AED:0.35 eAED:0.35 QI:119|1|0.83|1|0.8|0.66|6|0|268; (*GB) gi|119866037|gb|ABM05488.1| (e_value=3e-24) Impa2 [Nicotiana benthamiana];; (*SWP) sp|Q9SLX0|IMA1B_ORYSJ (e_value=4e-24) Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2;; (*TAIR) AT1G09270.3 (e_value=3e-25) | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2995162-2997833 FORWARD LENGTH=456;; (*ITAG) Solyc01g060470.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:63867613-63872933 transcript_region:SL2.40ch01:63867613..63872933+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00001236g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|225426728|ref|XP_002275633.1| (e_value=5e-112) PREDICTED: uncharacterized protein LOC100261490 [Vitis vinifera];; (*TAIR) AT4G22900.1 (e_value=4e-77) | Symbols: | Protein of unknown function (DUF1191) | chr4:12010221-12011252 FORWARD LENGTH=343;; (*ITAG) Solyc08g080070.1.1 (e_value=4e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60566406-60567341 transcript_region:SL2.40ch08:60566406..60567341+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00001236g0045.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0|0.33|3|0|717; (*GB) gi|3413481|emb|CAA07250.1| (e_value=0.0) serine protease [Solanum lycopersicum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=1e-168) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=1e-169) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g079860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60460267-60462504 transcript_region:SL2.40ch08:60460267..60462504+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001236g0041.1 protein AED:0.08 eAED:0.17 QI:0|0.42|0.12|1|0.85|0.75|8|0|616; (*GB) gi|255537221|ref|XP_002509677.1| (e_value=2e-126) Alpha-expansin 7 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LN94|EXPA7_ARATH (e_value=3e-107) Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1;; (*TAIR) AT1G12560.1 (e_value=3e-108) | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26, EXPA7 | expansin A7 | chr1:4276557-4277693 FORWARD LENGTH=262;; (*ITAG) Solyc08g080060.2.1 (e_value=4e-151) genomic_reference:SL2.40ch08 gene_region:60562889-60564536 transcript_region:SL2.40ch08:60562889..60564536+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00001236g0034.1 protein AED:0.19 eAED:0.20 QI:0|0.33|0|1|0.66|0.75|4|0|577; (*GB) gi|255537211|ref|XP_002509672.1| (e_value=8e-127) glycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=4e-51) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G12550.1 (e_value=3e-107) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:4274649-4275831 FORWARD LENGTH=323;; (*ITAG) Solyc08g080030.2.1 (e_value=1e-146) genomic_reference:SL2.40ch08 gene_region:60547852-60549724 transcript_region:SL2.40ch08:60547852..60549724+ go_terms:GO:0030267 functional_description:"Glyoxylate reductase (AHRD V1 **** B6THB0_MAIZE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0030267 NbS00001236g0042.1 protein AED:0.33 eAED:0.33 QI:124|0.8|0.72|1|0.5|0.63|11|0|363; (*GB) gi|255537217|ref|XP_002509675.1| (e_value=3e-151) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8H112|PGL1A_ARATH (e_value=2e-144) PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1;; (*TAIR) AT4G22890.2 (e_value=1e-145) | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157-12009175 FORWARD LENGTH=324;; (*ITAG) Solyc08g080050.2.1 (e_value=4e-179) genomic_reference:SL2.40ch08 gene_region:60555455-60559957 transcript_region:SL2.40ch08:60555455..60559957+ functional_description:"PGR5-like protein 1A, chloroplastic (AHRD V1 ***- PGL1A_ARATH)"; NbS00001236g0040.1 protein AED:0.35 eAED:0.35 QI:0|0.6|0.5|1|0|0|6|0|267; (*GB) gi|162568912|gb|ABY19382.1| (e_value=2e-162) putative staygreen protein [Nicotiana tabacum];; (*TAIR) AT4G22920.1 (e_value=3e-107) | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268;; (*ITAG) Solyc08g080090.2.1 (e_value=2e-142) genomic_reference:SL2.40ch08 gene_region:60579438-60582066 transcript_region:SL2.40ch08:60579438..60582066- functional_description:"Senescence-inducible chloroplast stay-green protein 2 (AHRD V1 **-- Q5EMP6_SOYBN)"; NbS00001236g0039.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|0|0|2|0|119; (*GB) gi|116831272|gb|ABK28590.1| (e_value=9e-14) unknown [Arabidopsis thaliana];; (*TAIR) AT3G46860.1 (e_value=2e-15) | Symbols: | Serine protease inhibitor, potato inhibitor I-type family protein | chr3:17260234-17260599 FORWARD LENGTH=85;; (*ITAG) Solyc08g080020.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60544916-60545230 transcript_region:SL2.40ch08:60544916..60545230+ go_terms:GO:0009611 functional_description:"Serine protease inhibitor potato inhibitor I-type family protein (AHRD V1 ***- D7LT19_ARALY); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00021998g0011.1 protein AED:0.17 eAED:0.17 QI:237|0.66|1|1|0.66|0.57|7|615|198; (*GB) gi|350537617|ref|NP_001234557.1| (e_value=4e-91) ubiquitin conjugating enzyme 2 [Solanum lycopersicum];; (*SWP) sp|Q9SHI7|UBC34_ARATH (e_value=5e-57) Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1;; (*TAIR) AT1G17280.2 (e_value=4e-58) | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 | chr1:5917146-5919162 REVERSE LENGTH=237;; (*ITAG) Solyc03g123660.2.1 (e_value=7e-94) genomic_reference:SL2.40ch03 gene_region:64499904-64503851 transcript_region:SL2.40ch03:64499904..64503851+ go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin conjugating enzyme 2 (AHRD V1 **** Q94FU3_SOLLC); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0005515,GO:0004842 NbS00021998g0012.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|2|0|281; (*GB) gi|419789|pir||S31196 (e_value=7e-98) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=2e-75) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=2e-76) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc08g083310.2.1 (e_value=3e-98) genomic_reference:SL2.40ch08 gene_region:62979638-62981391 transcript_region:SL2.40ch08:62979638..62981391- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00002658g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|469071|dbj|BAA03742.1| (e_value=2e-53) RNA-binding glycine-rich protein-1b [Nicotiana sylvestris];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=7e-44) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=2e-43) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc10g051390.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47556796-47557568 transcript_region:SL2.40ch10:47556796..47557568+ go_terms:GO:0008266 functional_description:"RNA-binding glycine-rich protein-1b (AHRD V1 **** Q40427_NICSY); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00039542g0010.1 protein AED:0.16 eAED:0.16 QI:437|1|1|1|0.5|0.66|3|136|223; (*GB) gi|224053402|ref|XP_002297801.1| (e_value=8e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=7e-65) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G80690.1 (e_value=6e-101) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:30329283-30330524 REVERSE LENGTH=227;; (*ITAG) Solyc03g117100.2.1 (e_value=2e-128) genomic_reference:SL2.40ch03 gene_region:60404176-60405950 transcript_region:SL2.40ch03:60404176..60405950+ functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00039542g0011.1 protein AED:0.35 eAED:0.39 QI:0|0.87|0.66|1|0.75|0.77|9|0|203; (*GB) gi|359482420|ref|XP_003632772.1| (e_value=7e-106) PREDICTED: DCN1-like protein 4 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8CCA0|DCNL4_MOUSE (e_value=1e-30) DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1;; (*TAIR) AT1G15860.2 (e_value=3e-98) | Symbols: | Domain of unknown function (DUF298) | chr1:5455055-5456741 FORWARD LENGTH=227;; (*ITAG) Solyc03g117110.2.1 (e_value=4e-125) genomic_reference:SL2.40ch03 gene_region:60411910-60417276 transcript_region:SL2.40ch03:60411910..60417276- go_terms:GO:0043130 functional_description:"DCN1-like protein 4 (AHRD V1 ***- B6TI85_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00036614g0005.1 protein AED:0.30 eAED:0.31 QI:0|0.58|0.69|1|0.58|0.61|13|806|412; (*GB) gi|225438347|ref|XP_002273171.1| (e_value=0.0) PREDICTED: cyclin-dependent kinase E-1 [Vitis vinifera];; (*SWP) sp|Q84TI6|CDKE1_ARATH (e_value=1e-178) Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=2 SV=2;; (*TAIR) AT5G63610.1 (e_value=8e-180) | Symbols: HEN3, CDKE;1, ATCDK8 | cyclin-dependent kinase E;1 | chr5:25463645-25465057 REVERSE LENGTH=470;; (*ITAG) Solyc12g027870.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:21220068-21227856 transcript_region:SL2.40ch12:21220068..21227856- go_terms:GO:0004693 functional_description:"Cell division protein kinase 8 (AHRD V1 **** B0W1D0_CULQU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00013227g0005.1 protein AED:0.31 eAED:0.32 QI:140|1|0.81|1|0.8|0.72|11|0|529; (*GB) gi|46371086|gb|AAS90325.1| (e_value=0.0) 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 1 [Nicotiana tabacum];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=0.0) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=0.0) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc01g067750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69081973-69096361 transcript_region:SL2.40ch01:69081973..69096361+ go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00006893g0002.1 protein AED:0.36 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|116; (*ITAG) Solyc06g008990.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:2927936-2928541 transcript_region:SL2.40ch06:2927936..2928541- functional_description:"Unknown Protein (AHRD V1)"; NbS00006893g0003.1 protein AED:0.22 eAED:0.35 QI:0|0|0|1|0|0|2|0|97; (*ITAG) Solyc12g038240.1.1 (e_value=6e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34727201-34728228 transcript_region:SL2.40ch12:34727201..34728228+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *-*- Q8VX25_SOLLC)"; NbS00012726g0004.1 protein AED:0.18 eAED:0.18 QI:292|0.87|0.77|1|0.62|0.55|9|445|329; (*GB) gi|7682432|gb|AAF67262.1|AF165186_1 (e_value=0.0) MAP kinase kinase [Nicotiana tabacum];; (*SWP) sp|Q9S7U9|M2K2_ARATH (e_value=3e-143) Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2;; (*TAIR) AT4G29810.1 (e_value=2e-144) | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363;; (*ITAG) Solyc12g009020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00012726g0010.1 protein AED:0.22 eAED:0.23 QI:1653|0.84|0.78|1|0.76|0.78|14|0|887; (*GB) gi|359484297|ref|XP_002279178.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257683 [Vitis vinifera];; (*TAIR) AT4G29790.1 (e_value=2e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211;; (*ITAG) Solyc07g040980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48762547-48775386 transcript_region:SL2.40ch07:48762547..48775386+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00011161g0011.1 protein AED:0.11 eAED:0.12 QI:0|0.33|0.25|1|0.33|0.25|4|0|412; (*GB) gi|225454298|ref|XP_002276925.1| (e_value=4e-57) PREDICTED: WRKY transcription factor 22 [Vitis vinifera];; (*SWP) sp|O04609|WRK22_ARATH (e_value=9e-52) WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1;; (*TAIR) AT4G01250.1 (e_value=7e-53) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc01g095100.2.1 (e_value=6e-111) genomic_reference:SL2.40ch01 gene_region:78259686-78261279 transcript_region:SL2.40ch01:78259686..78261279+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00011161g0010.1 protein AED:0.28 eAED:0.28 QI:12|0.6|0.5|0.83|1|1|6|0|373; (*GB) gi|356531949|ref|XP_003534538.1| (e_value=3e-106) PREDICTED: proline iminopeptidase-like [Glycine max];; (*SWP) sp|P46547|PIP_AERSO (e_value=2e-33) Proline iminopeptidase OS=Aeromonas sobria GN=pip PE=1 SV=3;; (*TAIR) AT3G61540.1 (e_value=4e-108) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22773399-22775699 FORWARD LENGTH=515;; (*ITAG) Solyc01g095120.2.1 (e_value=9e-133) genomic_reference:SL2.40ch01 gene_region:78267784-78273618 transcript_region:SL2.40ch01:78267784..78273618+ go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold (AHRD V1 **-- A4FFA2_SACEN); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0006508 NbS00011161g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|755; (*GB) gi|225454300|ref|XP_002275491.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9M316|PP292_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g61520, mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2 SV=1;; (*TAIR) AT3G61520.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:22768974-22771274 REVERSE LENGTH=766;; (*ITAG) Solyc01g095110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78263895-78266412 transcript_region:SL2.40ch01:78263895..78266412- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LSA9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009167g0006.1 protein AED:0.14 eAED:0.14 QI:165|1|1|1|1|1|5|351|287; (*GB) gi|350534450|ref|NP_001234653.1| (e_value=0.0) phosphosulfolactate synthase-related protein [Solanum lycopersicum];; (*TAIR) AT4G21320.1 (e_value=2e-151) | Symbols: HSA32 | Aldolase-type TIM barrel family protein | chr4:11340492-11341732 FORWARD LENGTH=286;; (*ITAG) Solyc02g079930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38895029-38898734 transcript_region:SL2.40ch02:38895029..38898734- go_terms:GO:0019295,GO:0008152 functional_description:"Phosphosulfolactate synthase (AHRD V1 ***- Q1ASZ8_RUBXD); contains Interpro domain(s) IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA "; GO:0019295,GO:0008152 NbS00009167g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|420; (*GB) gi|359497553|ref|XP_002272624.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244205 [Vitis vinifera];; (*TAIR) AT4G27240.1 (e_value=5e-164) | Symbols: | zinc finger (C2H2 type) family protein | chr4:13640160-13641640 FORWARD LENGTH=431;; (*ITAG) Solyc02g079920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38890126-38892256 transcript_region:SL2.40ch02:38890126..38892256- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00020187g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.28|0.85|0.5|0.57|7|0|374; (*GB) gi|976402|gb|AAB48944.1| (e_value=0.0) amino acid permease 1 [Nicotiana sylvestris];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=0.0) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.2 (e_value=0.0) | Symbols: | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=445;; (*ITAG) Solyc02g093870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49144488-49150207 transcript_region:SL2.40ch02:49144488..49150207+ go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 *-** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00020187g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.71|0.75|1|1|1|8|721|694; (*GB) gi|359488601|ref|XP_002270843.2| (e_value=0.0) PREDICTED: transcription factor GTE8-like [Vitis vinifera];; (*SWP) sp|Q9LK27|GTE8_ARATH (e_value=1e-115) Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2;; (*TAIR) AT3G27260.1 (e_value=1e-116) | Symbols: GTE8 | global transcription factor group E8 | chr3:10068411-10072403 FORWARD LENGTH=813;; (*ITAG) Solyc02g093880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49151330-49155789 transcript_region:SL2.40ch02:49151330..49155789- go_terms:GO:0005515,GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 **-* D7MP02_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0005515,GO:0003677 NbS00008625g0004.1 protein AED:0.23 eAED:0.24 QI:16|0.9|0.72|1|0.8|0.72|11|0|456; (*GB) gi|224091947|ref|XP_002309411.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11560.4 (e_value=2e-173) | Symbols: | LETM1-like protein | chr3:3639553-3645506 FORWARD LENGTH=872;; (*ITAG) Solyc09g010280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3647431-3666876 transcript_region:SL2.40ch09:3647431..3666876- functional_description:"Os08g0482100 protein (Fragment) (AHRD V1 **-- Q0J4Y4_ORYSJ); contains Interpro domain(s) IPR011685 LETM1-like "; NbS00049953g0003.1 protein AED:0.03 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|267; (*GB) gi|224092242|ref|XP_002309524.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJL7|RAX2_ARATH (e_value=2e-66) Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1;; (*TAIR) AT2G36890.1 (e_value=1e-67) | Symbols: RAX2, MYB38, ATMYB38, BIT1 | Duplicated homeodomain-like superfamily protein | chr2:15485821-15487245 FORWARD LENGTH=298;; (*ITAG) Solyc12g008670.1.1 (e_value=3e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2049011-2050274 transcript_region:SL2.40ch12:2049011..2050274+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00034071g0003.1 protein AED:0.10 eAED:0.10 QI:617|0.90|0.90|1|0.85|0.90|22|236|546; (*GB) gi|225453899|ref|XP_002278966.1| (e_value=0.0) PREDICTED: protein transport Sec1a [Vitis vinifera];; (*SWP) sp|Q9C5P7|SEC1A_ARATH (e_value=0.0) Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3;; (*TAIR) AT1G02010.1 (e_value=0.0) | Symbols: SEC1A | secretory 1A | chr1:348046-352197 FORWARD LENGTH=673;; (*ITAG) Solyc01g091300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76703040-76708743 transcript_region:SL2.40ch01:76703040..76708743+ go_terms:GO:0008565,GO:0005515 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0008565,GO:0005515 NbS00001530g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|57012880|sp|Q9SXS8.1|ERF3_TOBAC (e_value=2e-74) RecName: Full=Ethylene-responsive transcription factor 3; AltName: Full=Ethylene-responsive element-binding factor 3 homolog; AltName: Full=Ethylene-responsive element-binding factor 5; Short=EREBP-5; AltName: Full=NtERF5;; (*SWP) sp|Q9SXS8|ERF3_TOBAC (e_value=6e-76) Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1;; (*TAIR) AT1G50640.1 (e_value=2e-26) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc07g064890.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64094550-64095272 transcript_region:SL2.40ch07:64094550..64095272+ go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene responsive transcription factor 3a (AHRD V1 **** C0J9I5_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003700 NbS00037034g0005.1 protein AED:0.04 eAED:0.04 QI:163|1|1|1|0.5|0.4|5|261|266; (*GB) gi|255562615|ref|XP_002522313.1| (e_value=2e-129) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q2KIJ5|KDSR_BOVIN (e_value=2e-11) 3-ketodihydrosphingosine reductase OS=Bos taurus GN=KDSR PE=2 SV=1;; (*TAIR) AT3G50560.1 (e_value=9e-108) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272;; (*ITAG) Solyc02g065060.2.1 (e_value=8e-145) genomic_reference:SL2.40ch02 gene_region:30807914-30810710 transcript_region:SL2.40ch02:30807914..30810710+ go_terms:GO:0004745 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LTG0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745 NbS00001006g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|57013935|ref|YP_173408.1| (e_value=1e-39) hypothetical protein NitaMp064 [Nicotiana tabacum]; NbS00001006g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|112; (*ITAG) Solyc11g039970.1.1 (e_value=1e-50) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001006g0003.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|1|1|4|0|144; (*GB) gi|57013907|ref|YP_173380.1| (e_value=1e-55) ribosomal protein S12 [Nicotiana tabacum];; (*SWP) sp|P68536|RT12_PETPA (e_value=2e-55) Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1;; (*ITAG) ATMG00980.1 (e_value=2e-52) | Symbols: RPSL2 | Ribosomal protein S12/S23 family protein | chrM:260224-260601 REVERSE LENGTH=125;; (*ITAG) Solyc11g056360.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43110058-43110498 transcript_region:SL2.40ch11:43110058..43110498- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- C8PSU8_9SPIO); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0003735,GO:0005515 NbS00001006g0008.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|57013934|ref|YP_173407.1| (e_value=4e-45) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00001006g0020.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|0|2|0|251; (*GB) gi|82623383|gb|ABB87106.1| (e_value=1e-115) eukaryotic peptide chain release factor subunit 1-3-like [Solanum tuberosum];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=2e-113) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=1e-114) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc05g055210.1.1 (e_value=3e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64100673-64101986 transcript_region:SL2.40ch05:64100673..64101986+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-3-like (AHRD V1 **** Q2VCK6_SOLTU); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00001006g0028.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.6|0.5|0.6|5|0|346; (*GB) gi|255590603|ref|XP_002535312.1| (e_value=2e-124) 60S ribosomal protein L16, putative [Ricinus communis];; (*SWP) sp|Q04716|RT03_PETHY (e_value=9e-100) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=9e-72) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc12g039010.1.1 (e_value=6e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:37199046-37202368 transcript_region:SL2.40ch12:37199046..37202368+ go_terms:GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- A8DBV5_CAPAN); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 NbS00001006g0030.1 protein AED:0.55 eAED:0.63 QI:0|0|0.5|1|0|0.5|2|42|60 NbS00001006g0026.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|4|0|375; (*GB) gi|57013905|ref|YP_173378.1| (e_value=3e-120) hypothetical protein NitaMp032 [Nicotiana tabacum]; NbS00001006g0027.1 protein AED:0.28 eAED:0.46 QI:0|0|0|1|0|0|3|0|330; (*GB) gi|316996014|dbj|BAD83474.2| (e_value=6e-59) ribosomal protein S3 [Nicotiana tabacum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=8e-59) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=1e-46) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=1e-61) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00001006g0022.1 protein AED:0.14 eAED:0.23 QI:0|0|0|1|0|0|3|0|210; (*GB) gi|357436061|ref|XP_003588306.1| (e_value=2e-78) Ribosomal protein S3 [Medicago truncatula];; (*SWP) sp|Q04716|RT03_PETHY (e_value=7e-61) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=2e-51) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc05g045910.1.1 (e_value=6e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:56768351-56769212 transcript_region:SL2.40ch05:56768351..56769212+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- D3GF60_9ROSI)"; NbS00001006g0031.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|200; (*GB) gi|157325573|ref|YP_001468351.1| (e_value=1e-69) hypothetical chloroplast RF21 [Ipomoea purpurea];; (*SWP) sp|A7Y3J6|YCF2_IPOPU (e_value=3e-71) Protein ycf2 OS=Ipomoea purpurea GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-54) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc02g011930.1.1 (e_value=7e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:5017345-5019463 transcript_region:SL2.40ch02:5017345..5019463- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6YA39_9MAGN); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00001006g0023.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|115; (*GB) gi|57013934|ref|YP_173407.1| (e_value=4e-13) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00001006g0032.1 protein AED:0.47 eAED:0.63 QI:0|0|0|1|0|0|2|0|72; (*GB) gi|375314870|gb|AFA52041.1| (e_value=6e-29) PsbA (chloroplast) [Kirengeshoma palmata];; (*SWP) sp|P07063|PSBA_FREDI (e_value=1e-14) Photosystem Q(B) protein OS=Fremyella diplosiphon GN=psbA PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=2e-15) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00011146g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|15223149|ref|NP_177801.1| (e_value=5e-22) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G76750.1 (e_value=1e-24) | Symbols: | Protein of unknown function (DUF1278) | chr1:28811107-28811583 FORWARD LENGTH=158;; (*ITAG) Solyc11g005500.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:384861-385253 transcript_region:SL2.40ch11:384861..385253- functional_description:"ECA1 protein (AHRD V1 *-*- Q53JF8_ORYSJ); contains Interpro domain(s) IPR010701 Protein of unknown function DUF1278 "; NbS00011146g0015.1 protein AED:0.19 eAED:0.20 QI:0|0.5|0.33|1|1|1|3|0|320; (*GB) gi|305689802|gb|ADM64334.1| (e_value=2e-164) calcium-dependent protein kinase 9 [Nicotiana tabacum];; (*SWP) sp|Q9SSF8|CDPKU_ARATH (e_value=1e-146) Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana GN=CPK30 PE=1 SV=1;; (*TAIR) AT1G74740.1 (e_value=8e-148) | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-dependent protein kinase 30 | chr1:28080199-28082476 REVERSE LENGTH=541;; (*ITAG) Solyc03g113390.2.1 (e_value=1e-161) genomic_reference:SL2.40ch03 gene_region:57593080-57598567 transcript_region:SL2.40ch03:57593080..57598567+ go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** A9Z0P8_DATME); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00011146g0018.1 protein AED:0.30 eAED:0.30 QI:65|1|1|1|0.71|0.75|8|449|299; (*GB) gi|357519775|ref|XP_003630176.1| (e_value=3e-180) Mitogen-activated protein kinase organizer [Medicago truncatula];; (*SWP) sp|Q5XGI5|WDR83_XENTR (e_value=2e-99) WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1;; (*TAIR) AT5G64730.1 (e_value=3e-179) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:25873146-25875021 FORWARD LENGTH=299;; (*ITAG) Solyc11g005550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:403708-409767 transcript_region:SL2.40ch11:403708..409767+ functional_description:"WD-repeat protein (AHRD V1 **-- C4PK49_CARPA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00011146g0016.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|0.5|2|0|95; (*GB) gi|305689802|gb|ADM64334.1| (e_value=9e-34) calcium-dependent protein kinase 9 [Nicotiana tabacum];; (*SWP) sp|Q9M9V8|CDPKA_ARATH (e_value=3e-30) Calcium-dependent protein kinase 10 OS=Arabidopsis thaliana GN=CPK10 PE=1 SV=1;; (*TAIR) AT1G18890.1 (e_value=2e-31) | Symbols: ATCDPK1, CPK10, CDPK1, AtCPK10 | calcium-dependent protein kinase 1 | chr1:6523468-6525736 REVERSE LENGTH=545;; (*ITAG) Solyc03g113390.2.1 (e_value=1e-34) genomic_reference:SL2.40ch03 gene_region:57593080-57598567 transcript_region:SL2.40ch03:57593080..57598567+ go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** A9Z0P8_DATME); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00001187g0014.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|0.8|0.75|0.6|5|0|286; (*GB) gi|255575867|ref|XP_002528831.1| (e_value=4e-93) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9LW60|P2C44_ARATH (e_value=3e-58) Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1;; (*TAIR) AT3G23360.1 (e_value=2e-59) | Symbols: | Protein phosphatase 2C family protein | chr3:8355257-8356381 REVERSE LENGTH=260;; (*ITAG) Solyc09g090280.1.1 (e_value=3e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65157895-65160871 transcript_region:SL2.40ch09:65157895..65160871- go_terms:GO:0004722 functional_description:"Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase (AHRD V1 **** B6TPM6_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00001187g0012.1 protein AED:0.15 eAED:0.16 QI:0|0.72|0.41|0.91|0.90|0.91|12|0|1297; (*GB) gi|359477748|ref|XP_002281562.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251059 [Vitis vinifera];; (*TAIR) AT5G43310.3 (e_value=0.0) | Symbols: | COP1-interacting protein-related | chr5:17379883-17385387 REVERSE LENGTH=1164;; (*ITAG) Solyc09g090270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65147358-65156634 transcript_region:SL2.40ch09:65147358..65156634+ functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *-*- Q7GDB1_ARATH)"; NbS00001187g0010.1 protein AED:0.25 eAED:0.25 QI:549|1|0.92|1|1|1|14|0|464; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=0.0) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc09g090250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65131585-65137092 transcript_region:SL2.40ch09:65131585..65137092+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00055458g0004.1 protein AED:0.05 eAED:0.16 QI:0|0|0.5|1|0|0.5|2|768|737; (*GB) gi|359479250|ref|XP_002275790.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Vitis vinifera];; (*SWP) sp|Q9LFC5|PP360_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1;; (*TAIR) AT5G01110.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:42114-44303 REVERSE LENGTH=729;; (*ITAG) Solyc02g088140.1.1 (e_value=7e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44896531-44897909 transcript_region:SL2.40ch02:44896531..44897909+ go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00027705g0005.1 protein AED:0.20 eAED:0.28 QI:509|0|0.33|1|0|0.33|3|0|82 NbS00018202g0004.1 protein AED:0.29 eAED:0.29 QI:220|1|1|1|1|1|6|213|538; (*GB) gi|225452954|ref|XP_002284273.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 13-like [Vitis vinifera];; (*SWP) sp|Q0WV13|GAUTD_ARATH (e_value=0.0) Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1;; (*TAIR) AT3G01040.2 (e_value=0.0) | Symbols: GAUT13 | galacturonosyltransferase 13 | chr3:9392-11979 FORWARD LENGTH=532;; (*ITAG) Solyc02g088630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45234229-45239072 transcript_region:SL2.40ch02:45234229..45239072- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00058731g0003.1 protein AED:0.24 eAED:0.25 QI:363|0.85|1|1|0.28|0.25|8|611|91; (*GB) gi|42563004|ref|NP_176877.2| (e_value=2e-50) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G67060.1 (e_value=5e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc03g034250.2.1 (e_value=1e-58) genomic_reference:SL2.40ch03 gene_region:10215436-10222829 transcript_region:SL2.40ch03:10215436..10222829- functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00034015g0001.1 protein AED:0.00 eAED:0.00 QI:175|1|1|1|0.85|0.75|8|155|220; (*GB) gi|41745624|gb|AAS10177.1| (e_value=8e-129) YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus];; (*SWP) sp|O22152|YAB1_ARATH (e_value=2e-88) Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1;; (*TAIR) AT2G45190.1 (e_value=1e-89) | Symbols: AFO, FIL, YAB1 | Plant-specific transcription factor YABBY family protein | chr2:18628450-18630552 REVERSE LENGTH=229;; (*ITAG) Solyc01g091010.2.1 (e_value=3e-131) genomic_reference:SL2.40ch01 gene_region:76475369-76478983 transcript_region:SL2.40ch01:76475369..76478983- go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00010954g0020.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|0|0|2|0|498; (*GB) gi|125592062|gb|EAZ32412.1| (e_value=2e-28) hypothetical protein OsJ_16623 [Oryza sativa Japonica Group];; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=2e-26) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=4e-27) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc01g111850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89771695-89773633 transcript_region:SL2.40ch01:89771695..89773633- go_terms:GO:0005515,GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR009007 Peptidase aspartic, catalytic "; GO:0005515,GO:0003677 NbS00010954g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.70|0.61|1|0.58|0.33|18|576|2478; (*GB) gi|359474997|ref|XP_002278409.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera];; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=0.0) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=0.0) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00010954g0008.1 protein AED:0.32 eAED:0.36 QI:312|0.33|0.57|1|1|1|7|0|453; (*GB) gi|255560451|ref|XP_002521240.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q6NRH1|DCAF8_XENLA (e_value=1e-89) DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1;; (*TAIR) AT4G35140.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16723873-16726477 REVERSE LENGTH=496;; (*ITAG) Solyc01g111860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89775251-89782064 transcript_region:SL2.40ch01:89775251..89782064- go_terms:GO:0042826,GO:0042393 functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042826,GO:0042393 NbS00010954g0007.1 protein AED:0.53 eAED:0.88 QI:0|0|0|0.66|1|1|3|0|85; (*GB) gi|224103139|ref|XP_002312940.1| (e_value=4e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35140.1 (e_value=2e-11) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16723873-16726477 REVERSE LENGTH=496; NbS00053018g0003.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|0|0.33|3|0|140 NbS00059347g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.66|1|0.4|0.16|6|977|808; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=0.0) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=1e-46) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=7e-48) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g071430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51993677-51997466 transcript_region:SL2.40ch11:51993677..51997466+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00020117g0002.1 protein AED:0.25 eAED:0.26 QI:0|0.33|0.25|0.5|1|1|4|0|182; (*GB) gi|357459185|ref|XP_003599873.1| (e_value=1e-47) Glucan endo-1,3-beta-glucosidase [Medicago truncatula];; (*SWP) sp|O65399|E131_ARATH (e_value=7e-20) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT2G30933.1 (e_value=3e-39) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr2:13164179-13166517 REVERSE LENGTH=227;; (*ITAG) Solyc07g056310.2.1 (e_value=1e-54) genomic_reference:SL2.40ch07 gene_region:61480093-61482416 transcript_region:SL2.40ch07:61480093..61482416+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00020117g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|332322087|emb|CCA65979.1| (e_value=2e-23) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00020117g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|344; (*GB) gi|225444385|ref|XP_002267815.1| (e_value=5e-101) PREDICTED: probable serine/threonine-protein kinase WNK4 [Vitis vinifera];; (*SWP) sp|Q8S8Y8|WNK6_ARATH (e_value=2e-91) Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1;; (*TAIR) AT3G18750.3 (e_value=1e-92) | Symbols: WNK6 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567;; (*ITAG) Solyc10g009060.1.1 (e_value=1e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017129g0017.1 protein AED:0.03 eAED:0.03 QI:162|0.8|0.63|1|0.5|0.54|11|241|1526; (*GB) gi|225428139|ref|XP_002278562.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258889 [Vitis vinifera];; (*SWP) sp|Q80TE0|RPAP1_MOUSE (e_value=2e-14) RNA polymerase II-associated protein 1 OS=Mus musculus GN=Rpap1 PE=1 SV=2;; (*TAIR) AT4G38440.1 (e_value=0.0) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17989115-17994549 FORWARD LENGTH=1465;; (*ITAG) Solyc01g111910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89829346-89839875 transcript_region:SL2.40ch01:89829346..89839875- go_terms:GO:0005488 functional_description:"RNA polymerase II-associated protein 1 (AHRD V1 *-*- RPAP1_HUMAN); contains Interpro domain(s) IPR013930 RNA polymerase II-associated protein 1, N-terminal "; GO:0005488 NbS00017129g0018.1 protein AED:0.10 eAED:0.10 QI:0|0|0.33|1|0|0.66|3|407|305; (*GB) gi|297744545|emb|CBI37807.3| (e_value=6e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LEL5|4OMT_COPJA (e_value=3e-50) 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=8e-76) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g111900.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:89826309-89827725 transcript_region:SL2.40ch01:89826309..89827725- go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase-like protein (AHRD V1 ***- Q9T003_ARATH); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00017129g0002.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|4|0|640; (*GB) gi|255577864|ref|XP_002529805.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SDA8|FBL10_ARATH (e_value=0.0) F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1;; (*TAIR) AT2G17020.1 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr2:7396559-7398787 REVERSE LENGTH=656;; (*ITAG) Solyc01g111890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89817468-89825238 transcript_region:SL2.40ch01:89817468..89825238- go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00017129g0016.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|388|411; (*GB) gi|224105109|ref|XP_002313690.1| (e_value=6e-128) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q3EBZ2|SKI23_ARATH (e_value=2e-103) F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1;; (*TAIR) AT2G17030.1 (e_value=1e-104) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399108-7400650 FORWARD LENGTH=407;; (*ITAG) Solyc01g111920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89844796-89847331 transcript_region:SL2.40ch01:89844796..89847331+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00037281g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0.2|0.4|1|1|5|25|100; (*ITAG) Solyc02g090810.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:46876372-46878474 transcript_region:SL2.40ch02:46876372..46878474- go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 ***- Q1WLX8_CHLIN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00034358g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.87|1|1|1|1|9|416|431; (*GB) gi|225430021|ref|XP_002284175.1| (e_value=8e-153) PREDICTED: uncharacterized protein LOC100267889 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=5e-132) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc11g071310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51921522-51924871 transcript_region:SL2.40ch11:51921522..51924871- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00000273g0012.1 protein AED:0.17 eAED:0.17 QI:228|1|1|1|0.5|0.2|5|612|186; (*GB) gi|77745460|gb|ABB02629.1| (e_value=2e-67) unknown [Solanum tuberosum];; (*TAIR) AT1G68490.1 (e_value=1e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc06g069120.2.1 (e_value=2e-67) genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000273g0011.1 protein AED:0.04 eAED:0.04 QI:58|1|1|1|0.85|0.75|8|428|276; (*GB) gi|388522811|gb|AFK49467.1| (e_value=2e-124) unknown [Lotus japonicus];; (*SWP) sp|O35130|NEP1_MOUSE (e_value=6e-69) Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1;; (*TAIR) AT3G57000.1 (e_value=9e-114) | Symbols: | nucleolar essential protein-related | chr3:21092610-21094109 FORWARD LENGTH=298;; (*ITAG) Solyc12g017630.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7087202-7090616 transcript_region:SL2.40ch12:7087202..7090616+ functional_description:"Nucleolar essential protein 1 (AHRD V1 **-- B0WB67_CULQU); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 "; NbS00000273g0013.1 protein AED:0.13 eAED:0.13 QI:163|0.90|0.78|1|0.63|0.65|23|276|971; (*GB) gi|225455932|ref|XP_002276223.1| (e_value=0.0) PREDICTED: kinesin-4-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=5e-150) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G63640.2 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr1:23589234-23595139 REVERSE LENGTH=1065;; (*ITAG) Solyc06g069130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39297400-39304183 transcript_region:SL2.40ch06:39297400..39304183- go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 ***- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00059971g0004.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|5|328|253; (*GB) gi|255556015|ref|XP_002519042.1| (e_value=1e-141) protein binding protein, putative [Ricinus communis];; (*TAIR) AT3G47160.1 (e_value=4e-109) | Symbols: | RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245;; (*ITAG) Solyc02g078460.2.1 (e_value=3e-149) genomic_reference:SL2.40ch02 gene_region:37699862-37704464 transcript_region:SL2.40ch02:37699862..37704464- go_terms:GO:0008270 functional_description:"Ring finger protein 141 (AHRD V1 *-*- Q28I63_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00032497g0001.1 protein AED:0.19 eAED:0.19 QI:279|0|0.5|1|0|0.5|2|0|104; (*GB) gi|225461271|ref|XP_002284268.1| (e_value=9e-46) PREDICTED: calcium-binding protein PBP1 [Vitis vinifera];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=1e-30) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT5G54490.1 (e_value=9e-32) | Symbols: PBP1 | pinoid-binding protein 1 | chr5:22121458-22121841 FORWARD LENGTH=127;; (*ITAG) Solyc10g006740.2.1 (e_value=1e-55) genomic_reference:SL2.40ch10 gene_region:1199169-1200625 transcript_region:SL2.40ch10:1199169..1200625+ go_terms:GO:0031683 functional_description:"Centrin 2 (Fragment) (AHRD V1 **-- Q4U4N2_PIG); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00032497g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|84 NbS00003978g0005.1 protein AED:0.00 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|772; (*GB) gi|356573853|ref|XP_003555070.1| (e_value=0.0) PREDICTED: putative endo-1,3(4)-beta-glucanase 2-like [Glycine max];; (*SWP) sp|Q09850|ENG2_SCHPO (e_value=5e-33) Putative endo-1,3(4)-beta-glucanase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng2 PE=2 SV=1;; (*TAIR) AT5G15870.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc03g046200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15883134-15885335 transcript_region:SL2.40ch03:15883134..15885335- go_terms:GO:0016798 functional_description:"Endo-1 3-beta-glucanase (AHRD V1 ***- C5FLR9_NANOT); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00003978g0031.1 protein AED:0.13 eAED:0.15 QI:0|0.88|0.5|1|0.44|0.5|10|0|646; (*GB) gi|359488399|ref|XP_002279543.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253124 [Vitis vinifera];; (*SWP) sp|Q9LFS2|GEX3_ARATH (e_value=8e-144) Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana GN=GEX3 PE=2 SV=1;; (*TAIR) AT5G16020.1 (e_value=6e-145) | Symbols: GEX3 | gamete-expressed 3 | chr5:5229692-5232241 FORWARD LENGTH=641;; (*ITAG) Solyc03g045080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15462573-15468052 transcript_region:SL2.40ch03:15462573..15468052- functional_description:"Receptor-like protein kinase 2 (AHRD V1 *--- RCH2_ARATH); contains Interpro domain(s) IPR011047 Quinonprotein alcohol dehydrogenase-like "; NbS00003978g0029.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.33|1|1|1|6|279|628; (*GB) gi|298204394|emb|CBI16874.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G15900.1 (e_value=1e-156) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc03g046270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16080552-16085077 transcript_region:SL2.40ch03:16080552..16085077- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003978g0008.1 protein AED:0.32 eAED:0.33 QI:5|1|0.87|1|0.71|0.87|8|0|540; (*GB) gi|359488397|ref|XP_002279557.2| (e_value=3e-177) PREDICTED: uncharacterized protein LOC100247996 [Vitis vinifera];; (*SWP) sp|Q6DD45|ZCHC8_XENLA (e_value=2e-20) Zinc finger CCHC domain-containing protein 8 OS=Xenopus laevis GN=zcchc8 PE=2 SV=1;; (*TAIR) AT5G38600.1 (e_value=2e-119) | Symbols: | Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein | chr5:15457386-15460466 FORWARD LENGTH=532;; (*ITAG) Solyc03g045060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15401062-15411641 transcript_region:SL2.40ch03:15401062..15411641- go_terms:GO:0008270 functional_description:"Zinc finger CCHC domain-containing protein 8 (AHRD V1 *--- ZCHC8_CHICK); contains Interpro domain(s) IPR006568 PSP, proline-rich "; GO:0008270 NbS00003978g0027.1 protein AED:0.42 eAED:0.43 QI:0|0.5|0.8|1|1|1|5|0|193; (*GB) gi|147806491|emb|CAN74248.1| (e_value=7e-43) hypothetical protein VITISV_021085 [Vitis vinifera];; (*TAIR) AT3G02420.1 (e_value=2e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:496179-498772 REVERSE LENGTH=348;; (*ITAG) Solyc03g045090.2.1 (e_value=5e-44) genomic_reference:SL2.40ch03 gene_region:15474052-15478785 transcript_region:SL2.40ch03:15474052..15478785- functional_description:"cDNA clone 001-043-A08 full insert sequence (AHRD V1 **-- B7E741_ORYSJ)"; NbS00003978g0033.1 protein AED:0.01 eAED:0.01 QI:59|1|1|1|1|1|6|190|342; (*GB) gi|225451937|ref|XP_002282956.1| (e_value=1e-117) PREDICTED: uncharacterized protein LOC100267021 [Vitis vinifera];; (*TAIR) AT5G15880.1 (e_value=3e-106) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5185788-5187461 FORWARD LENGTH=348;; (*ITAG) Solyc03g046260.1.1 (e_value=3e-83) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16067677-16071474 transcript_region:SL2.40ch03:16067677..16071474+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003978g0044.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.55|1|0.75|0.66|9|0|1211; (*GB) gi|224127598|ref|XP_002329317.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=7e-46) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT1G67230.1 (e_value=0.0) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc03g045050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15380538-15390086 transcript_region:SL2.40ch03:15380538..15390086+ functional_description:"Nuclear matrix constituent protein 1 (AHRD V1 ***- D2YZU5_APIGR)"; NbS00003978g0042.1 protein AED:0.45 eAED:0.46 QI:170|0|0.33|0.66|1|1|3|0|236; (*ITAG) Solyc01g098430.2.1 (e_value=9e-16) genomic_reference:SL2.40ch01 gene_region:80701693-80711358 transcript_region:SL2.40ch01:80701693..80711358- functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00051970g0009.1 protein AED:0.03 eAED:0.03 QI:186|1|1|1|0.5|0.66|3|543|121; (*GB) gi|224142863|ref|XP_002324755.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*TAIR) AT4G29480.1 (e_value=1e-62) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:14486265-14487257 REVERSE LENGTH=122;; (*ITAG) Solyc08g065470.2.1 (e_value=1e-80) genomic_reference:SL2.40ch08 gene_region:50793610-50795280 transcript_region:SL2.40ch08:50793610..50795280+ go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- Q1EP47_MUSBA); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00051970g0008.1 protein AED:0.23 eAED:0.23 QI:324|1|1|1|1|1|9|285|487; (*GB) gi|328727190|gb|AEB38782.1| (e_value=0.0) ferrochelatase isoform I [Nicotiana tabacum];; (*SWP) sp|P42044|HEMH_CUCSA (e_value=0.0) Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1;; (*TAIR) AT5G26030.2 (e_value=0.0) | Symbols: FC1, FC-I, ATFC-I | ferrochelatase 1 | chr5:9096675-9098752 FORWARD LENGTH=466;; (*ITAG) Solyc10g084140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63108257-63114427 transcript_region:SL2.40ch10:63108257..63114427- go_terms:GO:0006783 functional_description:"Ferrochelatase (AHRD V1 ***- B9RRU8_RICCO); contains Interpro domain(s) IPR001015 Ferrochelatase "; GO:0006783 NbS00022117g0105.1 protein AED:0.10 eAED:0.10 QI:41|1|1|1|1|1|8|196|539 NbS00022117g0106.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.5|0.83|1|1|6|0|198 NbS00058515g0003.1 protein AED:0.26 eAED:0.27 QI:0|0.92|0.85|1|0.69|0.78|14|465|470; (*GB) gi|225426842|ref|XP_002276721.1| (e_value=0.0) PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein [Vitis vinifera];; (*SWP) sp|Q8CHJ0|PIGU_CRIGR (e_value=2e-33) Phosphatidylinositol glycan anchor biosynthesis class U protein OS=Cricetulus griseus GN=PIGU PE=1 SV=3;; (*TAIR) AT1G63110.1 (e_value=0.0) | Symbols: | GPI transamidase subunit PIG-U | chr1:23404870-23407757 FORWARD LENGTH=469;; (*ITAG) Solyc08g080420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60871159-60878126 transcript_region:SL2.40ch08:60871159..60878126+ go_terms:GO:0003923,GO:0034235 functional_description:"GPI-anchor transamidase component (AHRD V1 *--* Q6KCB9_9SACH); contains Interpro domain(s) IPR009600 GPI transamidase subunit PIG-U "; GO:0003923,GO:0034235 NbS00032826g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|363; (*GB) gi|224136458|ref|XP_002326865.1| (e_value=2e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|Q948R1|PLA11_ARATH (e_value=2e-125) Phospholipase A(1) DAD1, chloroplastic OS=Arabidopsis thaliana GN=DAD1 PE=1 SV=1;; (*TAIR) AT2G44810.1 (e_value=8e-124) | Symbols: DAD1 | alpha/beta-Hydrolases superfamily protein | chr2:18479095-18480168 FORWARD LENGTH=357;; (*ITAG) Solyc01g090220.2.1 (e_value=1e-180) genomic_reference:SL2.40ch01 gene_region:75620253-75633053 transcript_region:SL2.40ch01:75620253..75633053- go_terms:GO:0006629,GO:0008270 functional_description:"Lipase (Fragment) (AHRD V1 *--- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629,GO:0008270 NbS00006997g0001.1 protein AED:0.28 eAED:0.28 QI:470|1|1|1|1|1|10|257|528; (*GB) gi|332371916|dbj|BAK22408.1| (e_value=0.0) glucose-6-phosphate dehydrogenase [Nicotiana benthamiana];; (*SWP) sp|Q43839|G6PDC_SOLTU (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G35790.1 (e_value=0.0) | Symbols: G6PD1 | glucose-6-phosphate dehydrogenase 1 | chr5:13956879-13959686 REVERSE LENGTH=576;; (*ITAG) Solyc07g045540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55999419-56004983 transcript_region:SL2.40ch07:55999419..56004983+ go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** O65856_TOBAC); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00017061g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|0.75|1|0|0|4|859|201; (*GB) gi|255579009|ref|XP_002530356.1| (e_value=4e-84) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G06810.1 (e_value=4e-62) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2108493-2112256 FORWARD LENGTH=1141;; (*ITAG) Solyc03g063390.1.1 (e_value=2e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:31911330-31913027 transcript_region:SL2.40ch03:31911330..31913027- functional_description:"Genomic DNA chromosome 5 P1 clone MPH15 (AHRD V1 **-- Q9FG25_ARATH); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017061g0002.1 protein AED:0.38 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|327; (*GB) gi|225441407|ref|XP_002275246.1| (e_value=3e-114) PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera];; (*TAIR) AT5G06810.1 (e_value=5e-61) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2108493-2112256 FORWARD LENGTH=1141;; (*ITAG) Solyc03g063390.1.1 (e_value=5e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:31911330-31913027 transcript_region:SL2.40ch03:31911330..31913027- functional_description:"Genomic DNA chromosome 5 P1 clone MPH15 (AHRD V1 **-- Q9FG25_ARATH); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017061g0013.1 protein AED:0.26 eAED:0.61 QI:0|0.75|0.4|1|0.75|0.8|5|0|316; (*GB) gi|225441409|ref|XP_002278602.1| (e_value=3e-103) PREDICTED: DAZ-associated protein 1-like [Vitis vinifera];; (*SWP) sp|O14979|HNRDL_HUMAN (e_value=9e-19) Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3;; (*TAIR) AT3G15010.2 (e_value=4e-38) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc02g021560.2.1 (e_value=4e-40) genomic_reference:SL2.40ch02 gene_region:13906095-13908491 transcript_region:SL2.40ch02:13906095..13908491- go_terms:GO:0005515 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 **-- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00017061g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|0.33|0.5|0.33|3|120|95 NbS00005314g0007.1 protein AED:0.13 eAED:0.13 QI:314|0.66|0.57|0.85|0.5|0.57|7|0|365; (*GB) gi|255541464|ref|XP_002511796.1| (e_value=4e-110) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=1e-87) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=7e-89) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc10g017880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:6067349-6073483 transcript_region:SL2.40ch10:6067349..6073483- functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)"; NbS00005314g0008.1 protein AED:0.17 eAED:0.17 QI:0|1|0.83|1|0.4|0.66|6|0|224; (*GB) gi|350535683|ref|NP_001234463.1| (e_value=3e-135) uncharacterized protein LOC543655 [Solanum lycopersicum];; (*SWP) sp|Q9LQ73|PX11C_ARATH (e_value=4e-130) Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1;; (*TAIR) AT1G01820.1 (e_value=3e-131) | Symbols: PEX11C | peroxin 11c | chr1:296213-297723 REVERSE LENGTH=235;; (*ITAG) Solyc10g017850.2.1 (e_value=6e-138) genomic_reference:SL2.40ch10 gene_region:6046481-6049651 transcript_region:SL2.40ch10:6046481..6049651+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-1 (AHRD V1 ***- PX111_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00039954g0005.1 protein AED:0.24 eAED:0.25 QI:0|0.8|0.83|1|1|1|6|305|172; (*GB) gi|385888878|gb|AFI98561.1| (e_value=3e-82) RabE1 [Nicotiana benthamiana];; (*SWP) sp|P28186|RAE1C_ARATH (e_value=4e-80) Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1;; (*TAIR) AT5G59840.1 (e_value=2e-81) | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216;; (*ITAG) Solyc11g073050.1.1 (e_value=7e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53248484-53252238 transcript_region:SL2.40ch11:53248484..53252238+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C362_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00007662g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.7|1|0.77|0.6|10|0|865; (*GB) gi|255583208|ref|XP_002532369.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q4P683|ATG9_USTMA (e_value=2e-88) Autophagy-related protein 9 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG9 PE=3 SV=1;; (*TAIR) AT2G31260.1 (e_value=0.0) | Symbols: APG9, ATAPG9 | autophagy 9 (APG9) | chr2:13322291-13326293 REVERSE LENGTH=866;; (*ITAG) Solyc04g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2242377-2248072 transcript_region:SL2.40ch04:2242377..2248072- functional_description:"Autophagy-related protein 9 (AHRD V1 ***- D7FZF2_ECTSI); contains Interpro domain(s) IPR007241 Autophagy-related protein 9 "; NbS00007662g0015.1 protein AED:0.26 eAED:0.26 QI:457|1|1|1|0.62|0.55|9|357|679; (*GB) gi|356544408|ref|XP_003540643.1| (e_value=0.0) PREDICTED: C2 domain-containing protein At1g53590-like [Glycine max];; (*TAIR) AT3G19830.2 (e_value=0.0) | Symbols: NTMC2TYPE5.2, NTMC2T5.2 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6886338-6889974 REVERSE LENGTH=693;; (*ITAG) Solyc04g008620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2231877-2239671 transcript_region:SL2.40ch04:2231877..2239671- functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- B9HY18_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00007662g0016.1 protein AED:0.09 eAED:0.09 QI:183|0.76|0.72|1|0.70|0.66|18|718|1648; (*GB) gi|359483223|ref|XP_002270538.2| (e_value=0.0) PREDICTED: histone acetyltransferase HAC1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C5X9|HAC1_ARATH (e_value=0.0) Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2;; (*TAIR) AT1G79000.1 (e_value=0.0) | Symbols: HAC1, PCAT2, ATHPCAT2, ATHAC1 | histone acetyltransferase of the CBP family 1 | chr1:29716933-29723984 REVERSE LENGTH=1697;; (*ITAG) Solyc01g008120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2245997-2262660 transcript_region:SL2.40ch01:2245997..2262660- go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00017874g0002.1 protein AED:0.07 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|757; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13940.1 (e_value=2e-13) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005;; (*ITAG) Solyc03g115590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59294426-59297565 transcript_region:SL2.40ch03:59294426..59297565- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH)"; NbS00017874g0001.1 protein AED:0.24 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|290; (*ITAG) Solyc03g115600.2.1 (e_value=9e-59) genomic_reference:SL2.40ch03 gene_region:59307045-59309250 transcript_region:SL2.40ch03:59307045..59309250- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00001798g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.7|0.54|1|0.6|0.72|11|920|680; (*GB) gi|359495293|ref|XP_002277016.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265500 [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G71530.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:26939766-26942306 FORWARD LENGTH=655;; (*ITAG) Solyc06g064660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36690349-36696083 transcript_region:SL2.40ch06:36690349..36696083+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001798g0003.1 protein AED:0.39 eAED:0.63 QI:0|0|0|1|1|1|2|0|144; (*ITAG) Solyc06g064720.1.1 (e_value=1e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36725787-36728042 transcript_region:SL2.40ch06:36725787..36728042+ go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00043208g0008.1 protein AED:0.11 eAED:0.11 QI:186|1|1|1|1|1|2|234|324; (*GB) gi|224133542|ref|XP_002321600.1| (e_value=1e-102) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9FM03|DOF56_ARATH (e_value=7e-43) Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2;; (*TAIR) AT5G62940.1 (e_value=5e-44) | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding family protein | chr5:25257183-25258504 REVERSE LENGTH=372;; (*ITAG) Solyc03g112930.2.1 (e_value=9e-105) genomic_reference:SL2.40ch03 gene_region:57274932-57277016 transcript_region:SL2.40ch03:57274932..57277016- go_terms:GO:0045449 functional_description:"Dof zinc finger protein-like (AHRD V1 ***- Q0WPR9_ARATH); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00043208g0002.1 protein AED:0.23 eAED:0.24 QI:157|0|0.5|1|0|0.5|2|0|173; (*GB) gi|225456329|ref|XP_002283829.1| (e_value=7e-48) PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera];; (*TAIR) AT3G48550.1 (e_value=7e-34) | Symbols: | BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17994048-17994595 FORWARD LENGTH=158;; (*ITAG) Solyc03g112920.1.1 (e_value=7e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57260422-57260952 transcript_region:SL2.40ch03:57260422..57260952- functional_description:"C2H2L domain class transcription factor (AHRD V1 ***- D9ZIU3_MALDO)"; NbS00043208g0010.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|1|1|3|0|114 NbS00043208g0011.1 protein AED:0.19 eAED:0.29 QI:0|0|0|1|0|0|4|0|309; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-17) hypothetical protein [Nicotiana tabacum]; NbS00007050g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|0.5|1|1|2|0|107; (*GB) gi|186478886|ref|NP_001117356.1| (e_value=5e-18) protein SPIRAL1-like1 [Arabidopsis thaliana];; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=1e-19) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=1e-20) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc01g010270.2.1 (e_value=4e-34) genomic_reference:SL2.40ch01 gene_region:5062742-5065710 transcript_region:SL2.40ch01:5062742..5065710- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00020943g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|394; (*GB) gi|255543284|ref|XP_002512705.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=1e-36) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50160.1 (e_value=7e-79) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18598826-18600903 REVERSE LENGTH=503;; (*ITAG) Solyc05g006690.2.1 (e_value=1e-124) genomic_reference:SL2.40ch05 gene_region:1362203-1363925 transcript_region:SL2.40ch05:1362203..1363925+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 *-*- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00020943g0004.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|0|0|2|981|365; (*GB) gi|296086456|emb|CBI32045.3| (e_value=1e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=3e-149) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=2e-150) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc01g108410.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020943g0021.1 protein AED:0.17 eAED:0.17 QI:157|0|0.5|0.5|1|0.5|2|0|283; (*GB) gi|296086458|emb|CBI32047.3| (e_value=3e-134) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10380.1 (e_value=8e-99) | Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305;; (*ITAG) Solyc05g006700.2.1 (e_value=1e-180) genomic_reference:SL2.40ch05 gene_region:1366839-1367894 transcript_region:SL2.40ch05:1366839..1367894- functional_description:"Wall-associated receptor kinase-like 20 (AHRD V1 *--- WAKLQ_ARATH)"; NbS00020943g0022.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|1|0.75|0.8|5|0|324; (*GB) gi|296086453|emb|CBI32042.3| (e_value=6e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94F08|HIPL2_ARATH (e_value=9e-151) HIPL2 protein OS=Arabidopsis thaliana GN=HIPL2 PE=1 SV=2;; (*TAIR) AT5G62630.1 (e_value=7e-152) | Symbols: HIPL2 | hipl2 protein precursor | chr5:25143719-25146390 REVERSE LENGTH=696;; (*ITAG) Solyc03g113490.2.1 (e_value=6e-153) genomic_reference:SL2.40ch03 gene_region:57669071-57672798 transcript_region:SL2.40ch03:57669071..57672798+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00058906g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|1|1|3|0|488; (*GB) gi|359483084|ref|XP_002273826.2| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 6-like [Vitis vinifera];; (*SWP) sp|Q93Z08|E136_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2;; (*TAIR) AT5G58090.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23505556-23507193 REVERSE LENGTH=477;; (*ITAG) Solyc05g025500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32867544-32874865 transcript_region:SL2.40ch05:32867544..32874865+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00058906g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.41|0.38|0.84|1|1|13|0|518; (*GB) gi|225443375|ref|XP_002267010.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q5XET6|PUS3_ARATH (e_value=0.0) RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1;; (*TAIR) AT1G78910.1 (e_value=0.0) | Symbols: | Pseudouridine synthase family protein | chr1:29665269-29667557 FORWARD LENGTH=478;; (*ITAG) Solyc07g042750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53587283-53591073 transcript_region:SL2.40ch07:53587283..53591073+ go_terms:GO:0009982 functional_description:"Pseudouridine synthase family protein (AHRD V1 **** D7L9Z2_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009982 NbS00048353g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|687; (*GB) gi|297740376|emb|CBI30558.3| (e_value=2e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02390.1 (e_value=9e-47) | Symbols: | Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835;; (*ITAG) Solyc09g010790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4082430-4085320 transcript_region:SL2.40ch09:4082430..4085320+ go_terms:GO:0005975,GO:0006810 functional_description:"( related) (AHRD V1 *-*- Q2HTJ8_MEDTR)"; GO:0005975,GO:0006810 NbS00027626g0002.1 protein AED:0.11 eAED:0.11 QI:209|0.88|0.9|1|0.66|0.7|10|325|540; (*GB) gi|255539376|ref|XP_002510753.1| (e_value=4e-172) electron transporter, putative [Ricinus communis];; (*TAIR) AT1G76620.1 (e_value=6e-113) | Symbols: | Protein of unknown function, DUF547 | chr1:28756787-28759131 FORWARD LENGTH=527;; (*ITAG) Solyc04g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64020719-64024389 transcript_region:SL2.40ch04:64020719..64024389+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *--- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00027626g0011.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.6|0.5|0.6|5|0|251; (*ITAG) Solyc10g049530.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00009047g0001.1 protein AED:0.06 eAED:0.06 QI:83|0.85|0.5|1|0.85|0.75|8|0|698; (*GB) gi|359477496|ref|XP_003631985.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854837 [Vitis vinifera];; (*SWP) sp|Q9BYJ9|YTHD1_HUMAN (e_value=1e-55) YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1;; (*TAIR) AT1G48110.2 (e_value=4e-169) | Symbols: ECT7 | evolutionarily conserved C-terminal region 7 | chr1:17770339-17772806 REVERSE LENGTH=639;; (*ITAG) Solyc12g099090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00002433g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.33|3|0|1001; (*GB) gi|147864587|emb|CAN79804.1| (e_value=0.0) hypothetical protein VITISV_031502 [Vitis vinifera];; (*SWP) sp|Q9GPJ1|SKEL2_DROME (e_value=8e-15) Protein Skeletor, isoforms D/E OS=Drosophila melanogaster GN=Skeletor PE=1 SV=3;; (*TAIR) AT5G54830.1 (e_value=0.0) | Symbols: | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein | chr5:22273394-22276117 FORWARD LENGTH=907;; (*ITAG) Solyc06g065720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37551492-37554197 transcript_region:SL2.40ch06:37551492..37554197+ go_terms:GO:0004497 functional_description:"DOMON domain-containing protein (AHRD V1 **-- D7MUW8_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0004497 NbS00011472g0008.1 protein AED:0.09 eAED:0.09 QI:35|1|1|1|0.85|0.87|8|326|470; (*GB) gi|27597231|dbj|BAC55156.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SDZ9|PPAF2_IPOBA (e_value=0.0) Purple acid phosphatase 2 OS=Ipomoea batatas GN=PAP2 PE=1 SV=1;; (*TAIR) AT2G27190.1 (e_value=0.0) | Symbols: PAP1, ATPAP1, PAP12, ATPAP12 | purple acid phosphatase 12 | chr2:11621400-11623438 REVERSE LENGTH=469;; (*ITAG) Solyc04g080920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62566945-62569455 transcript_region:SL2.40ch04:62566945..62569455- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** Q84KZ1_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00011472g0009.1 protein AED:0.09 eAED:0.09 QI:14|0.8|0.66|1|0.8|0.66|6|292|358; (*GB) gi|317106672|dbj|BAJ53175.1| (e_value=0.0) JHL18I08.9 [Jatropha curcas];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-137) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G75500.2 (e_value=2e-177) | Symbols: WAT1 | Walls Are Thin 1 | chr1:28338282-28340091 REVERSE LENGTH=389;; (*ITAG) Solyc04g080940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62579308-62582332 transcript_region:SL2.40ch04:62579308..62582332- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q94AP3_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00038342g0004.1 protein AED:0.13 eAED:0.19 QI:0|0.42|0.25|0.87|0.28|0.5|8|0|348; (*GB) gi|255582872|ref|XP_002532208.1| (e_value=6e-57) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g045320.2.1 (e_value=5e-144) genomic_reference:SL2.40ch07 gene_region:55743299-55748161 transcript_region:SL2.40ch07:55743299..55748161+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026395g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|342; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=4e-139) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=1e-80) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=1e-129) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g044960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55340431-55342005 transcript_region:SL2.40ch07:55340431..55342005+ go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8SQH4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00026395g0007.1 protein AED:0.43 eAED:0.53 QI:0|0|0|1|1|1|2|0|59; (*ITAG) Solyc07g044970.1.1 (e_value=5e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:55344792-55345433 transcript_region:SL2.40ch07:55344792..55345433+ go_terms:GO:0005524 functional_description:"ATP-binding protein (P-loop) (AHRD V1 *-*- Q81HR9_BACCR); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005524 NbS00026395g0003.1 protein AED:0.24 eAED:0.24 QI:193|1|0.75|1|1|1|4|0|579; (*GB) gi|350538711|ref|NP_001233844.1| (e_value=0.0) NIM1-like protein 2 [Solanum lycopersicum];; (*SWP) sp|Q8L746|NPR3_ARATH (e_value=1e-168) Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1;; (*TAIR) AT5G45110.1 (e_value=1e-169) | Symbols: NPR3, ATNPR3 | NPR1-like protein 3 | chr5:18229319-18231334 FORWARD LENGTH=586;; (*ITAG) Solyc07g044980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55346685-55351408 transcript_region:SL2.40ch07:55346685..55351408- go_terms:GO:0005515 functional_description:"NPR1-1 protein (Fragment) (AHRD V1 ***- B8XQT4_SOYBN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbC24101312g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|52001191|gb|AAU21476.1| (e_value=1e-69) chloroplast photosystem I reaction center V [Camellia sinensis];; (*SWP) sp|Q9S7N7|PSAG_ARATH (e_value=8e-66) Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1;; (*TAIR) AT1G55670.1 (e_value=6e-67) | Symbols: PSAG | photosystem I subunit G | chr1:20802874-20803356 REVERSE LENGTH=160;; (*ITAG) Solyc07g066150.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64869442-64869882 transcript_region:SL2.40ch07:64869442..64869882+ go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit V (AHRD V1 ***- B6U534_MAIZE); contains Interpro domain(s) IPR017494 Photosystem I reaction center, PsaG, plant "; GO:0016020 NbS00052176g0004.1 protein AED:0.17 eAED:0.19 QI:0|0.78|0.73|1|0.57|0.53|15|620|726; (*GB) gi|359494728|ref|XP_002282542.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263178 [Vitis vinifera];; (*SWP) sp|Q9C0C7|AMRA1_HUMAN (e_value=1e-28) Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2;; (*TAIR) AT1G04140.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr1:1075984-1080321 REVERSE LENGTH=790;; (*ITAG) Solyc09g091020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65716313-65723844 transcript_region:SL2.40ch09:65716313..65723844- go_terms:GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND80_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00020960g0001.1 protein AED:0.05 eAED:0.06 QI:0|0.66|0.5|1|1|1|4|56|356; (*GB) gi|255545056|ref|XP_002513589.1| (e_value=2e-109) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q700C7|SPCH_ARATH (e_value=7e-80) Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1;; (*TAIR) AT5G53210.1 (e_value=5e-81) | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21586606-21588941 REVERSE LENGTH=364;; (*ITAG) Solyc03g007410.2.1 (e_value=3e-120) genomic_reference:SL2.40ch03 gene_region:1952298-1954788 transcript_region:SL2.40ch03:1952298..1954788+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00004293g0006.1 protein AED:0.19 eAED:0.20 QI:322|1|0.75|1|1|1|4|0|464; (*GB) gi|225449643|ref|XP_002262646.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242107 [Vitis vinifera];; (*TAIR) AT5G04500.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc05g055420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64216268-64222017 transcript_region:SL2.40ch05:64216268..64222017- go_terms:GO:0016757 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0016757 NbS00004293g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|255584380|ref|XP_002532924.1| (e_value=1e-135) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9Y169|EXT2_DROME (e_value=6e-35) Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1;; (*TAIR) AT5G04500.1 (e_value=9e-121) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc05g055420.2.1 (e_value=1e-163) genomic_reference:SL2.40ch05 gene_region:64216268-64222017 transcript_region:SL2.40ch05:64216268..64222017- go_terms:GO:0016757 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0016757 NbS00016379g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0.5|0.66|3|0|369; (*GB) gi|225433035|ref|XP_002284663.1| (e_value=7e-169) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=2e-139) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=1e-140) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g089770.2.1 (e_value=4e-163) genomic_reference:SL2.40ch09 gene_region:64808312-64809468 transcript_region:SL2.40ch09:64808312..64809468+ go_terms:GO:0010302,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0009815 NbS00041868g0007.1 protein AED:0.29 eAED:0.29 QI:81|0.85|0.80|1|0.9|0.85|21|545|948; (*GB) gi|332105893|gb|AEE01408.1| (e_value=0.0) beta-galactosidase STBG2 [Solanum lycopersicum];; (*SWP) sp|Q9SCV3|BGAL9_ARATH (e_value=0.0) Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1;; (*TAIR) AT2G32810.1 (e_value=0.0) | Symbols: BGAL9 | beta galactosidase 9 | chr2:13919410-13925325 REVERSE LENGTH=887;; (*ITAG) Solyc09g092160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66653813-66668675 transcript_region:SL2.40ch09:66653813..66668675- go_terms:GO:0004565 functional_description:"Beta-galactosidase (AHRD V1 **** A2JGW9_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565 NbS00032747g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.86|0.75|1|0.73|0.81|16|506|602; (*GB) gi|359494318|ref|XP_002266863.2| (e_value=0.0) PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Vitis vinifera];; (*SWP) sp|Q922K7|NOP2_MOUSE (e_value=6e-159) Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1;; (*TAIR) AT4G26600.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13419629-13423418 FORWARD LENGTH=671;; (*ITAG) Solyc07g052110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57978811-57988010 transcript_region:SL2.40ch07:57978811..57988010+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p "; GO:0006364 NbS00043158g0004.1 protein AED:0.27 eAED:0.34 QI:0|0|0.5|1|1|1|2|433|110; (*GB) gi|255581829|ref|XP_002531715.1| (e_value=2e-35) Cytochrome c oxidase copper chaperone, putative [Ricinus communis];; (*SWP) sp|Q54ID0|COX17_DICDI (e_value=1e-16) Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 SV=1;; (*TAIR) AT3G15352.1 (e_value=1e-29) | Symbols: ATCOX17, COX17 | cytochrome c oxidase 17 | chr3:5180266-5180490 FORWARD LENGTH=74;; (*ITAG) Solyc10g007010.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1412466-1412705 transcript_region:SL2.40ch10:1412466..1412705- go_terms:GO:0016531 functional_description:"Cytochrome c oxidase copper chaperone family protein (AHRD V1 **** D7KKD3_ARALY); contains Interpro domain(s) IPR007745 Cytochrome c oxidase copper chaperone "; GO:0016531 NbS00039691g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|242036841|ref|XP_002465815.1| (e_value=2e-23) hypothetical protein SORBIDRAFT_01g046340 [Sorghum bicolor];; (*SWP) sp|O04244|Y4200_ARATH (e_value=7e-13) Uncharacterized protein At4g02000 OS=Arabidopsis thaliana GN=At4g02000 PE=2 SV=1;; (*TAIR) AT2G13450.1 (e_value=4e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02000.1); Has 247 Blast hits to 243 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:5598739-5599923 REVERSE LENGTH=394; NbS00039691g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0.1|0.6|0.55|0.5|10|0|621; (*GB) gi|255583311|ref|XP_002532418.1| (e_value=2e-147) Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=7e-19) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33830.1 (e_value=1e-133) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16220324-16222676 REVERSE LENGTH=576;; (*ITAG) Solyc11g043160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34983630-34987897 transcript_region:SL2.40ch11:34983630..34987897- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00025319g0007.1 protein AED:0.19 eAED:0.22 QI:0|0.5|0|1|0|0.33|3|0|149; (*GB) gi|297739342|emb|CBI29332.3| (e_value=4e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|P13853|HS17C_ARATH (e_value=1e-31) 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2;; (*TAIR) AT1G53540.1 (e_value=1e-32) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980510-19980983 FORWARD LENGTH=157;; (*ITAG) Solyc04g072250.2.1 (e_value=1e-44) genomic_reference:SL2.40ch04 gene_region:56842685-56844459 transcript_region:SL2.40ch04:56842685..56844459- go_terms:GO:0042803 functional_description:"class I heat shock protein 1 (AHRD V1 ***- B6TTC8_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0042803 NbS00025319g0006.1 protein AED:0.06 eAED:0.06 QI:315|1|1|1|1|1|3|84|619; (*GB) gi|21105740|gb|AAM34769.1|AF509869_1 (e_value=0.0) nam-like protein 6 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=6e-59) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT1G34190.1 (e_value=7e-120) | Symbols: anac017, NAC017 | NAC domain containing protein 17 | chr1:12451729-12453914 FORWARD LENGTH=557;; (*ITAG) Solyc12g056790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48227553-48230632 transcript_region:SL2.40ch12:48227553..48230632+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GT49_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00033670g0013.1 protein AED:0.03 eAED:0.08 QI:87|0|0.5|1|1|1|2|90|354; (*GB) gi|23343581|emb|CAC88762.1| (e_value=0.0) serine acetyltransferase 1 [Nicotiana tabacum];; (*SWP) sp|Q42588|SAT1_ARATH (e_value=5e-123) Serine acetyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=SAT1 PE=1 SV=2;; (*TAIR) AT1G55920.1 (e_value=4e-124) | Symbols: ATSERAT2;1, SAT5, SAT1, SERAT2;1 | serine acetyltransferase 2;1 | chr1:20912378-20913322 FORWARD LENGTH=314;; (*ITAG) Solyc10g006040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:784572-785669 transcript_region:SL2.40ch10:784572..785669+ go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00033670g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.88|0.9|1|1|1|10|255|358; (*GB) gi|225461886|ref|XP_002264515.1| (e_value=2e-160) PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Vitis vinifera];; (*SWP) sp|Q8VYE2|TIM50_ARATH (e_value=2e-124) Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1;; (*TAIR) AT1G55900.1 (e_value=1e-125) | Symbols: TIM50, emb1860 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:20903163-20905420 FORWARD LENGTH=376;; (*ITAG) Solyc10g006020.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:769462-778426 transcript_region:SL2.40ch10:769462..778426+ functional_description:"Mitochondrial import inner membrane translocase subunit tim50 (AHRD V1 *--- C8V8E4_EMENI); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00033670g0012.1 protein AED:0.09 eAED:0.10 QI:0|1|0.66|1|1|1|3|0|190; (*GB) gi|225461868|ref|XP_002265045.1| (e_value=5e-79) PREDICTED: 30S ribosomal protein S10, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M4Y3|RR10_MESCR (e_value=2e-78) 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1;; (*TAIR) AT3G13120.2 (e_value=4e-77) | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:4220310-4221526 REVERSE LENGTH=191;; (*ITAG) Solyc10g006030.2.1 (e_value=2e-116) genomic_reference:SL2.40ch10 gene_region:779582-782983 transcript_region:SL2.40ch10:779582..782983+ go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10-like (AHRD V1 ***- A1YMX4_BRACM); contains Interpro domain(s) IPR005731 Ribosomal protein S10, bacterial "; GO:0005840,GO:0015935 NbC25921396g0004.1 protein AED:0.14 eAED:0.15 QI:0|0.71|0.5|0.87|0.71|0.62|8|0|267; (*GB) gi|350537569|ref|NP_001233788.1| (e_value=3e-173) DNA repair protein RAD51 homolog [Solanum lycopersicum];; (*SWP) sp|Q40134|RAD51_SOLLC (e_value=8e-175) DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51 PE=2 SV=1;; (*TAIR) AT5G20850.1 (e_value=3e-168) | Symbols: ATRAD51, RAD51 | RAS associated with diabetes protein 51 | chr5:7070758-7072860 REVERSE LENGTH=342;; (*ITAG) Solyc07g017540.2.1 (e_value=5e-176) genomic_reference:SL2.40ch07 gene_region:7490189-7493859 transcript_region:SL2.40ch07:7490189..7493859- go_terms:GO:0005524 functional_description:"Rad51 DNA recombination/repair protein (AHRD V1 ***- B7G0B3_PHATR); contains Interpro domain(s) IPR011941 DNA repair protein RAD51 "; GO:0005524 NbS00006149g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|225436845|ref|XP_002270749.1| (e_value=0.0) PREDICTED: tankyrase-2-like [Vitis vinifera];; (*SWP) sp|Q54KA7|SECG_DICDI (e_value=1e-30) Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=2e-20) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc09g074290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61580158-61581582 transcript_region:SL2.40ch09:61580158..61581582- go_terms:GO:0008134 functional_description:"Ankyrin repeat-containing protein (AHRD V1 **-- D3BAQ3_POLPA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00008017g0022.1 protein AED:0.21 eAED:0.23 QI:0|0.81|0.75|1|0.54|0.5|12|685|1176; (*GB) gi|296085211|emb|CBI28706.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O97159|CHDM_DROME (e_value=6e-11) Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2;; (*TAIR) AT5G36740.1 (e_value=2e-167) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr5:14460790-14465727 FORWARD LENGTH=1179;; (*ITAG) Solyc09g065340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59010695-59021345 transcript_region:SL2.40ch09:59010695..59021345+ go_terms:GO:0006508,GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0006508,GO:0008270 NbS00008017g0020.1 protein AED:0.25 eAED:0.31 QI:0|0.5|0|1|0.5|0.33|3|0|331; (*GB) gi|357440717|ref|XP_003590636.1| (e_value=2e-161) WD repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q498M4|WDR5_RAT (e_value=3e-130) WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1;; (*TAIR) AT4G02730.1 (e_value=2e-151) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:1207759-1209066 FORWARD LENGTH=333;; (*ITAG) Solyc09g065290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58949458-58951870 transcript_region:SL2.40ch09:58949458..58951870+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0035064 NbS00008017g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.75|0.75|1|1|4|360|119; (*GB) gi|445612|prf||1909359A (e_value=4e-67) ribosomal protein S19;; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=5e-65) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=4e-66) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=7e-71) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00008017g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|297737550|emb|CBI26751.3| (e_value=5e-87) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g051090.1.1 (e_value=5e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00008017g0019.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|0.5|0.66|3|10|179; (*GB) gi|225437034|ref|XP_002272980.1| (e_value=2e-62) PREDICTED: uncharacterized protein LOC100244184 [Vitis vinifera];; (*TAIR) AT4G02725.1 (e_value=2e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:1206055-1207290 FORWARD LENGTH=165;; (*ITAG) Solyc09g065300.2.1 (e_value=3e-75) genomic_reference:SL2.40ch09 gene_region:58951798-58957679 transcript_region:SL2.40ch09:58951798..58957679- functional_description:"Uncharacterized membrane protein (AHRD V1 *-*- Q0I8H8_SYNS3)"; NbS00020011g0002.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|0|0|2|0|87; (*GB) gi|14334824|gb|AAK59590.1| (e_value=1e-28) putative protein transport factor [Arabidopsis thaliana];; (*TAIR) AT4G01810.1 (e_value=6e-31) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc11g056380.1.1 (e_value=6e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43121104-43121565 transcript_region:SL2.40ch11:43121104..43121565- functional_description:"Unknown Protein (AHRD V1)"; NbS00020011g0001.1 protein AED:0.40 eAED:0.63 QI:0|0|0|1|0|0|2|0|63 NbS00013085g0013.1 protein AED:0.35 eAED:0.37 QI:0|0.33|0.25|1|1|1|4|0|181; (*GB) gi|225456359|ref|XP_002283991.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100264705 [Vitis vinifera];; (*TAIR) AT5G63480.1 (e_value=1e-30) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417317-25418473 FORWARD LENGTH=189;; (*ITAG) Solyc08g006670.2.1 (e_value=2e-61) genomic_reference:SL2.40ch08 gene_region:1247049-1249937 transcript_region:SL2.40ch08:1247049..1249937- functional_description:"Unknown Protein (AHRD V1)"; NbS00013085g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|94 NbS00013085g0012.1 protein AED:0.31 eAED:0.31 QI:799|0.75|0.8|1|1|1|5|371|465; (*GB) gi|224143338|ref|XP_002324921.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25050.1 (e_value=5e-176) | Symbols: | Major facilitator superfamily protein | chr5:8632022-8633828 FORWARD LENGTH=499;; (*ITAG) Solyc08g006680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1252318-1257044 transcript_region:SL2.40ch08:1252318..1257044+ go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B4B3T5_9CHRO); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00011774g0012.1 protein AED:0.06 eAED:0.06 QI:189|1|1|1|0.5|0.2|5|647|184; (*GB) gi|77745460|gb|ABB02629.1| (e_value=2e-86) unknown [Solanum tuberosum];; (*TAIR) AT1G68490.1 (e_value=3e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc06g069120.2.1 (e_value=5e-88) genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011774g0017.1 protein AED:0.15 eAED:0.15 QI:163|0.95|0.91|1|0.63|0.65|23|276|988; (*GB) gi|225455932|ref|XP_002276223.1| (e_value=0.0) PREDICTED: kinesin-4-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=2e-162) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G63640.2 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr1:23589234-23595139 REVERSE LENGTH=1065;; (*ITAG) Solyc06g069130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39297400-39304183 transcript_region:SL2.40ch06:39297400..39304183- go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 ***- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00011774g0014.1 protein AED:0.22 eAED:0.22 QI:48|1|1|1|1|1|7|175|276; (*GB) gi|358248388|ref|NP_001239618.1| (e_value=4e-121) uncharacterized protein LOC100788480 [Glycine max];; (*SWP) sp|O35130|NEP1_MOUSE (e_value=4e-68) Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1;; (*TAIR) AT3G57000.1 (e_value=6e-112) | Symbols: | nucleolar essential protein-related | chr3:21092610-21094109 FORWARD LENGTH=298;; (*ITAG) Solyc12g017630.1.1 (e_value=9e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7087202-7090616 transcript_region:SL2.40ch12:7087202..7090616+ functional_description:"Nucleolar essential protein 1 (AHRD V1 **-- B0WB67_CULQU); contains Interpro domain(s) IPR005304 Ribosomal biogenesis, methyltransferase, EMG1/NEP1 "; NbS00011774g0006.1 protein AED:0.25 eAED:0.28 QI:0|0|0.33|1|1|1|3|0|189; (*GB) gi|356554497|ref|XP_003545582.1| (e_value=4e-24) PREDICTED: NAC domain-containing protein 21/22-like [Glycine max];; (*SWP) sp|O04017|NAC98_ARATH (e_value=8e-18) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT3G18400.1 (e_value=1e-25) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314;; (*ITAG) Solyc12g036480.1.1 (e_value=6e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31380780-31383643 transcript_region:SL2.40ch12:31380780..31383643- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00038423g0005.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|388; (*GB) gi|225457036|ref|XP_002282787.1| (e_value=4e-71) PREDICTED: uncharacterized protein LOC100243388 [Vitis vinifera];; (*TAIR) AT1G23710.1 (e_value=2e-34) | Symbols: | Protein of unknown function (DUF1645) | chr1:8385363-8386250 FORWARD LENGTH=295;; (*ITAG) Solyc03g114350.1.1 (e_value=5e-113) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:58408606-58409475 transcript_region:SL2.40ch03:58408606..58409475+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00024935g0005.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|284; (*GB) gi|225436656|ref|XP_002280518.1| (e_value=3e-99) PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera];; (*SWP) sp|Q1PFH7|PPR89_ARATH (e_value=2e-81) Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1;; (*TAIR) AT1G62350.1 (e_value=1e-82) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23056653-23057935 FORWARD LENGTH=196;; (*ITAG) Solyc08g061590.2.1 (e_value=8e-121) genomic_reference:SL2.40ch08 gene_region:46366044-46367838 transcript_region:SL2.40ch08:46366044..46367838- go_terms:GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270 NbS00036546g0009.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.33|1|0|0|3|24|126; (*GB) gi|119029720|gb|ABL59970.1| (e_value=1e-14) lectin [Nicotiana tabacum];; (*ITAG) Solyc12g098190.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64152328-64154070 transcript_region:SL2.40ch12:64152328..64154070- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00036546g0010.1 protein AED:0.51 eAED:0.51 QI:31|1|0.33|1|0.5|0.66|3|0|82 NbS00036546g0008.1 protein AED:0.22 eAED:0.26 QI:0|0.6|0.5|1|0.8|1|6|0|230; (*GB) gi|301557932|gb|ADK78986.1| (e_value=1e-122) VAMP721 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9MAS5|VA726_ARATH (e_value=1e-121) Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2;; (*TAIR) AT1G04760.1 (e_value=8e-123) | Symbols: ATVAMP726, VAMP726 | vesicle-associated membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=220;; (*ITAG) Solyc12g098180.1.1 (e_value=2e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64149568-64151597 transcript_region:SL2.40ch12:64149568..64151597+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00015513g0016.1 protein AED:0.25 eAED:0.25 QI:179|0.77|0.8|1|0.77|0.7|10|0|489; (*GB) gi|145308221|gb|ABP57375.1| (e_value=0.0) phosphoinositide-specific phospholipase C [Nicotiana tabacum];; (*SWP) sp|Q944C1|PLCD4_ARATH (e_value=0.0) Phosphoinositide phospholipase C 4 OS=Arabidopsis thaliana GN=PLC4 PE=2 SV=2;; (*TAIR) AT5G58700.1 (e_value=0.0) | Symbols: ATPLC4, PLC4 | phosphatidylinositol-speciwc phospholipase C4 | chr5:23713144-23716057 REVERSE LENGTH=597;; (*ITAG) Solyc06g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1174772-1180699 transcript_region:SL2.40ch06:1174772..1180699+ go_terms:GO:0023034,GO:0006629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region "; GO:0023034,GO:0006629 NbS00015513g0015.1 protein AED:0.18 eAED:0.18 QI:104|0.66|0.71|1|0.83|0.71|7|195|456; (*GB) gi|5734585|emb|CAB52796.1| (e_value=0.0) putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=1e-78) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT2G29990.1 (e_value=0.0) | Symbols: NDA2 | alternative NAD(P)H dehydrogenase 2 | chr2:12793562-12795913 REVERSE LENGTH=508;; (*ITAG) Solyc06g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1218194-1222072 transcript_region:SL2.40ch06:1218194..1222072- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00015513g0003.1 protein AED:0.20 eAED:0.20 QI:343|0.83|1|1|1|1|7|162|347; (*GB) gi|350537637|ref|NP_001233791.1| (e_value=0.0) omega-3 fatty acid desaturase [Solanum lycopersicum];; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0.0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=3e-178) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00015513g0006.1 protein AED:0.40 eAED:0.60 QI:0|0.33|0.5|1|0.66|0.5|4|450|138; (*GB) gi|224134140|ref|XP_002321746.1| (e_value=5e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q75QN6|PHS1_ARATH (e_value=3e-23) Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1;; (*TAIR) AT5G23720.3 (e_value=2e-24) | Symbols: PHS1 | dual specificity protein phosphatase family protein | chr5:7998506-8002594 FORWARD LENGTH=920;; (*ITAG) Solyc03g118350.2.1 (e_value=5e-62) genomic_reference:SL2.40ch03 gene_region:61305752-61313365 transcript_region:SL2.40ch03:61305752..61313365- go_terms:GO:0005515,GO:0004721 functional_description:"Dual specificity protein phosphatase (AHRD V1 *-** D7L3D2_ARALY); contains Interpro domain(s) IPR015275 Actin-fragmin kinase, catalytic "; GO:0005515,GO:0004721 NbS00018553g0009.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|0.66|0.5|4|0|139; (*GB) gi|14583098|gb|AAK69758.1|AF384822_1 (e_value=9e-32) CDPK adapter protein 1 [Mesembryanthemum crystallinum];; (*TAIR) AT1G05410.1 (e_value=1e-28) | Symbols: | Protein of unknown function (DUF1423) | chr1:1585504-1587268 REVERSE LENGTH=471;; (*ITAG) Solyc06g054210.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33514873-33515271 transcript_region:SL2.40ch06:33514873..33515271- functional_description:"Calmodulin protein kinase (Fragment) (AHRD V1 ***- D3K3H9_LONJA)"; NbS00018553g0008.1 protein AED:0.29 eAED:0.32 QI:32|0.33|0.25|1|0.66|0.25|4|0|349; (*GB) gi|224111156|ref|XP_002315765.1| (e_value=5e-119) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05410.1 (e_value=1e-92) | Symbols: | Protein of unknown function (DUF1423) | chr1:1585504-1587268 REVERSE LENGTH=471;; (*ITAG) Solyc09g082140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63367834-63372156 transcript_region:SL2.40ch09:63367834..63372156+ functional_description:"CDPK adapter protein 1 (AHRD V1 ***- Q94F64_MESCR)"; NbS00018553g0114.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|261 NbS00018553g0113.1 protein AED:0.18 eAED:0.18 QI:116|1|1|1|1|1|4|376|142 NbS00018553g0105.1 protein AED:0.00 eAED:0.01 QI:0|1|0.33|1|0|0|3|379|134 NbS00018553g0104.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|381 NbS00008723g0002.1 protein AED:0.30 eAED:0.31 QI:0|1|0|1|1|1|2|0|282; (*GB) gi|302143918|emb|CBI23023.3| (e_value=9e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46550.2 (e_value=3e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3). | chr2:19112264-19113037 REVERSE LENGTH=257;; (*ITAG) Solyc03g083000.2.1 (e_value=1e-89) genomic_reference:SL2.40ch03 gene_region:46392787-46395384 transcript_region:SL2.40ch03:46392787..46395384+ functional_description:"AT2G46550 protein (Fragment) (AHRD V1 *-*- B9DHY8_ARATH)"; NbS00008723g0009.1 protein AED:0.37 eAED:0.38 QI:248|0.88|0.8|1|1|1|10|0|404; (*GB) gi|225455348|ref|XP_002276809.1| (e_value=0.0) PREDICTED: putative aminoacrylate hydrolase RutD [Vitis vinifera];; (*TAIR) AT5G53050.3 (e_value=1e-173) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:21510534-21513432 REVERSE LENGTH=396;; (*ITAG) Solyc03g083010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46396642-46403381 transcript_region:SL2.40ch03:46396642..46403381+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MSC9_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00008723g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|118; (*ITAG) Solyc03g083000.2.1 (e_value=1e-40) genomic_reference:SL2.40ch03 gene_region:46392787-46395384 transcript_region:SL2.40ch03:46392787..46395384+ functional_description:"AT2G46550 protein (Fragment) (AHRD V1 *-*- B9DHY8_ARATH)"; NbS00017302g0011.1 protein AED:0.07 eAED:0.09 QI:49|0.5|0.33|1|0.5|0.33|3|0|434; (*GB) gi|75331337|sp|Q8W2N5.1|DES_TOBAC (e_value=0.0) RecName: Full=9-divinyl ether synthase; Short=NtDES1; AltName: Full=Colneleate synthase; AltName: Full=Cytochrome P450 74D3;; (*SWP) sp|Q8W2N5|DES_TOBAC (e_value=0.0) 9-divinyl ether synthase OS=Nicotiana tabacum GN=DES1 PE=1 SV=1;; (*TAIR) AT5G42650.1 (e_value=2e-121) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc01g109140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87953424-87955263 transcript_region:SL2.40ch01:87953424..87955263+ go_terms:GO:0019825,GO:0009978 functional_description:"Cytochrome P450"; GO:0019825,GO:0009978 NbS00017302g0010.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|501; (*GB) gi|350539693|ref|NP_001234502.1| (e_value=0.0) cytochrome P450 CYP74C4 [Solanum lycopersicum];; (*SWP) sp|Q0PHS9|DES_CAPAN (e_value=3e-172) 9-divinyl ether synthase OS=Capsicum annuum GN=DES PE=2 SV=1;; (*TAIR) AT5G42650.1 (e_value=9e-155) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc01g109150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87965068-87967143 transcript_region:SL2.40ch01:87965068..87967143+ go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00031840g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|85068678|gb|ABC69419.1| (e_value=2e-78) CYP72A56 [Nicotiana tabacum];; (*SWP) sp|Q9SHG5|C72C1_ARATH (e_value=6e-48) Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2;; (*TAIR) AT3G14650.1 (e_value=2e-57) | Symbols: CYP72A11 | cytochrome P450, family 72, subfamily A, polypeptide 11 | chr3:4922206-4924165 FORWARD LENGTH=512;; (*ITAG) Solyc07g055540.2.1 (e_value=8e-82) genomic_reference:SL2.40ch07 gene_region:60852100-60855974 transcript_region:SL2.40ch07:60852100..60855974- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00039027g0003.1 protein AED:0.37 eAED:0.38 QI:0|1|0|1|0|0|2|0|93; (*ITAG) Solyc05g006610.2.1 (e_value=2e-16) genomic_reference:SL2.40ch05 gene_region:1261047-1263904 transcript_region:SL2.40ch05:1261047..1263904+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019346g0002.1 protein AED:0.45 eAED:0.76 QI:0|0|0|1|1|1|3|0|100 NbS00041612g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|466; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=2e-131) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=4e-122) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34138.1 (e_value=6e-51) | Symbols: UGT73B1 | UDP-glucosyl transferase 73B1 | chr4:16348267-16349858 REVERSE LENGTH=488;; (*ITAG) Solyc05g012670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5875384-5876718 transcript_region:SL2.40ch05:5875384..5876718+ go_terms:GO:0047209 functional_description:"Glucosyltransferase-3 (AHRD V1 **** Q8S9A6_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00007986g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|356527079|ref|XP_003532141.1| (e_value=6e-46) PREDICTED: uncharacterized protein LOC100794169 [Glycine max];; (*TAIR) AT1G50720.1 (e_value=2e-44) | Symbols: | Stigma-specific Stig1 family protein | chr1:18789180-18789644 REVERSE LENGTH=154;; (*ITAG) Solyc05g050730.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60004557-60005021 transcript_region:SL2.40ch05:60004557..60005021+ go_terms:GO:0055114 functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; GO:0055114 NbS00007986g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|50 NbS00007986g0008.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|115; (*GB) gi|83596111|gb|ABC25454.1| (e_value=5e-13) zinc finger B-box protein [Solanum sogarandinum];; (*ITAG) Solyc06g073180.2.1 (e_value=6e-13) genomic_reference:SL2.40ch06 gene_region:41479688-41483031 transcript_region:SL2.40ch06:41479688..41483031+ go_terms:GO:0003700,GO:0019904 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0003700,GO:0019904 NbS00033972g0005.1 protein AED:0.11 eAED:0.11 QI:170|1|1|1|1|1|5|383|168; (*GB) gi|48209968|gb|AAT40531.1| (e_value=1e-103) ATP synthase D chain, mitochondrial, putative [Solanum demissum];; (*SWP) sp|Q9FT52|ATP5H_ARATH (e_value=1e-92) ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3;; (*TAIR) AT3G52300.1 (e_value=9e-94) | Symbols: ATPQ | ATP synthase D chain, mitochondrial | chr3:19396689-19398119 FORWARD LENGTH=168;; (*ITAG) Solyc11g072450.1.1 (e_value=1e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52705683-52710449 transcript_region:SL2.40ch11:52705683..52710449- go_terms:GO:0000276 functional_description:"Mitochondrial F0 ATP synthase D chain (AHRD V1 ***- B3TLP5_ELAGV); contains Interpro domain(s) IPR008689 ATPase, F0 complex, subunit D, mitochondrial "; GO:0000276 NbS00000799g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|224128007|ref|XP_002320218.1| (e_value=2e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60170.1 (e_value=7e-21) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485;; (*ITAG) Solyc08g078430.2.1 (e_value=9e-30) genomic_reference:SL2.40ch08 gene_region:59406043-59410273 transcript_region:SL2.40ch08:59406043..59410273- go_terms:GO:0005515,GO:0043021 functional_description:"Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal "; GO:0005515,GO:0043021 NbS00000799g0006.1 protein AED:0.55 eAED:0.55 QI:0|0.5|0|0.66|1|1|3|0|98; (*GB) gi|388523003|gb|AFK49563.1| (e_value=6e-28) unknown [Lotus japonicus];; (*SWP) sp|P42791|RL182_ARATH (e_value=2e-24) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2;; (*TAIR) AT3G05590.1 (e_value=2e-25) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187;; (*ITAG) Solyc01g099900.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:81786875-81789836 transcript_region:SL2.40ch01:81786875..81789836+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e "; GO:0003735,GO:0003723 NbS00000799g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|551; (*GB) gi|225444173|ref|XP_002268853.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Vitis vinifera];; (*SWP) sp|Q9STE1|PP333_ARATH (e_value=2e-162) Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1;; (*TAIR) AT4G21300.1 (e_value=1e-163) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11336479-11339052 FORWARD LENGTH=857;; (*ITAG) Solyc02g069500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33958158-33960719 transcript_region:SL2.40ch02:33958158..33960719+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEV2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000799g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|147852314|emb|CAN82222.1| (e_value=2e-15) hypothetical protein VITISV_011870 [Vitis vinifera];; (*ITAG) Solyc02g030210.2.1 (e_value=5e-30) genomic_reference:SL2.40ch02 gene_region:16023195-16026741 transcript_region:SL2.40ch02:16023195..16026741+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At2g41710 (AHRD V1 ***- AP2L4_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00000799g0003.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|297740904|emb|CBI31086.3| (e_value=4e-132) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STE1|PP333_ARATH (e_value=8e-106) Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1;; (*TAIR) AT4G21300.1 (e_value=6e-107) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11336479-11339052 FORWARD LENGTH=857;; (*ITAG) Solyc02g069500.1.1 (e_value=3e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33958158-33960719 transcript_region:SL2.40ch02:33958158..33960719+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEV2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00024682g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|172; (*ITAG) Solyc07g063170.1.1 (e_value=8e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:62950636-62951142 transcript_region:SL2.40ch07:62950636..62951142+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038629g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.57|0.46|0.93|0.57|0.46|15|0|1465; (*GB) gi|307101694|gb|ADN32812.1| (e_value=0.0) sieve element occlusion c [Solanum phureja];; (*TAIR) AT3G01680.1 (e_value=5e-147) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740;; (*ITAG) Solyc05g013850.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7237101-7240446 transcript_region:SL2.40ch05:7237101..7240446- functional_description:"Sieve element-occluding protein 3 (AHRD V1 **-- B5THF7_MEDTR)"; NbS00038629g0009.1 protein AED:0.33 eAED:0.36 QI:0|1|0|1|1|1|2|0|168; (*GB) gi|125987960|dbj|BAF47120.1| (e_value=5e-103) translationally controlled tumor protein like protein [Nicotiana tabacum];; (*SWP) sp|Q9XHL7|TCTP_TOBAC (e_value=5e-101) Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1;; (*TAIR) AT3G16640.1 (e_value=1e-79) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=9e-88) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00010395g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|225432474|ref|XP_002277334.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase-like 4 [Vitis vinifera];; (*SWP) sp|Q9M8J2|GATL4_ARATH (e_value=0.0) Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1;; (*TAIR) AT3G06260.1 (e_value=0.0) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351;; (*ITAG) Solyc01g080370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72119143-72121647 transcript_region:SL2.40ch01:72119143..72121647- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 *-*- B9HK74_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00010395g0010.1 protein AED:0.01 eAED:0.02 QI:7|1|0|1|1|0.5|2|0|390; (*GB) gi|225432476|ref|XP_002279067.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259662 [Vitis vinifera];; (*SWP) sp|Q5E9X5|AP5M1_BOVIN (e_value=2e-19) AP-5 complex subunit mu-1 OS=Bos taurus GN=AP5M1 PE=2 SV=1;; (*TAIR) AT2G20790.2 (e_value=0.0) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952054 REVERSE LENGTH=475;; (*ITAG) Solyc01g080360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72102428-72119735 transcript_region:SL2.40ch01:72102428..72119735+ go_terms:GO:0030131 functional_description:"MHD domain-containing death-inducing protein (AHRD V1 *--- MUDEN_HUMAN); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0030131 NbS00010395g0007.1 protein AED:0.14 eAED:0.14 QI:89|1|0.5|1|0|0.5|2|532|54 NbS00008742g0005.1 protein AED:0.35 eAED:0.36 QI:0|1|1|1|1|0.83|6|0|323; (*GB) gi|225448441|ref|XP_002273682.1| (e_value=5e-154) PREDICTED: CTD small phosphatase-like protein 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q29I63|CNEP1_DROPS (e_value=1e-19) CTD nuclear envelope phosphatase 1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=l(1)G0269 PE=3 SV=1;; (*TAIR) AT3G55960.1 (e_value=2e-133) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:20760797-20762892 REVERSE LENGTH=305;; (*ITAG) Solyc06g051520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31482740-31498569 transcript_region:SL2.40ch06:31482740..31498569+ go_terms:GO:0016791 functional_description:"Mitochondrial import inner membrane translocase subunit TIM50 (AHRD V1 *--- TIM50_YEAST); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00047908g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|561; (*GB) gi|255551134|ref|XP_002516615.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q93YV6|2A5I_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1;; (*TAIR) AT5G25510.1 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr5:8882728-8884325 REVERSE LENGTH=500;; (*ITAG) Solyc06g065690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37502785-37506004 transcript_region:SL2.40ch06:37502785..37506004- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00047908g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.69|0.71|0.78|0.84|0.92|14|421|534; (*GB) gi|350537079|ref|NP_001233768.1| (e_value=0.0) cyclin A2 [Solanum lycopersicum];; (*SWP) sp|Q147G5|CCA22_ARATH (e_value=3e-151) Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1;; (*TAIR) AT5G11300.1 (e_value=2e-152) | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like cyclin 3B from Arabidopsis | chr5:3601811-3604466 REVERSE LENGTH=436;; (*ITAG) Solyc06g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37492237-37497897 transcript_region:SL2.40ch06:37492237..37497897+ go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 *-** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00018348g0007.1 protein AED:0.16 eAED:0.19 QI:609|0.6|0.33|1|0.4|0.33|6|0|372; (*GB) gi|262192739|gb|ACY30439.1| (e_value=2e-111) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT4G37130.1 (e_value=2e-87) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:17489567-17491773 FORWARD LENGTH=513;; (*ITAG) Solyc02g090230.2.1 (e_value=8e-120) genomic_reference:SL2.40ch02 gene_region:46429888-46437493 transcript_region:SL2.40ch02:46429888..46437493+ functional_description:"Nucleoporin p58/p45 (AHRD V1 ***- B4FHB0_MAIZE)"; NbS00018348g0012.1 protein AED:0.31 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|285; (*GB) gi|255562697|ref|XP_002522354.1| (e_value=9e-55) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SCT2|PP277_ARATH (e_value=4e-49) Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1;; (*TAIR) AT3G50420.1 (e_value=3e-50) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18710871-18713649 REVERSE LENGTH=794;; (*ITAG) Solyc02g090240.2.1 (e_value=1e-87) genomic_reference:SL2.40ch02 gene_region:46438332-46440841 transcript_region:SL2.40ch02:46438332..46440841- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00018348g0011.1 protein AED:0.44 eAED:0.49 QI:0|0|0|1|0|0.33|3|0|96; (*GB) gi|255562697|ref|XP_002522354.1| (e_value=7e-24) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SCT2|PP277_ARATH (e_value=4e-14) Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1;; (*TAIR) AT3G50420.1 (e_value=3e-15) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18710871-18713649 REVERSE LENGTH=794;; (*ITAG) Solyc02g090240.2.1 (e_value=4e-40) genomic_reference:SL2.40ch02 gene_region:46438332-46440841 transcript_region:SL2.40ch02:46438332..46440841- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00018348g0013.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|3|0|218; (*GB) gi|255562697|ref|XP_002522354.1| (e_value=3e-78) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SCT2|PP277_ARATH (e_value=2e-65) Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1;; (*TAIR) AT3G50420.1 (e_value=2e-66) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18710871-18713649 REVERSE LENGTH=794;; (*ITAG) Solyc02g090240.2.1 (e_value=7e-114) genomic_reference:SL2.40ch02 gene_region:46438332-46440841 transcript_region:SL2.40ch02:46438332..46440841- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00033279g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|0.75|1|1|4|0|168; (*ITAG) Solyc09g064920.2.1 (e_value=4e-74) genomic_reference:SL2.40ch09 gene_region:58041266-58046595 transcript_region:SL2.40ch09:58041266..58046595- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00030141g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|225455904|ref|XP_002275968.1| (e_value=0.0) PREDICTED: DNA/RNA-binding protein KIN17 [Vitis vinifera];; (*SWP) sp|Q8K339|KIN17_MOUSE (e_value=9e-115) DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1;; (*TAIR) AT1G55460.1 (e_value=0.0) | Symbols: | DNA/RNA-binding protein Kin17, conserved region | chr1:20707567-20708802 FORWARD LENGTH=411;; (*ITAG) Solyc05g054500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63560285-63561484 transcript_region:SL2.40ch05:63560285..63561484- go_terms:GO:0003723,GO:0003690 functional_description:"DNA/RNA-binding protein KIN17 (AHRD V1 **-* KIN17_MOUSE); contains Interpro domain(s) IPR019447 DNA/RNA-binding protein Kin17, conserved region "; GO:0003723,GO:0003690 NbS00030141g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|4|0|374; (*GB) gi|62866633|gb|AAY17262.1| (e_value=0.0) TSC13 protein [Nicotiana benthamiana];; (*SWP) sp|Q55C17|TECR_DICDI (e_value=6e-60) Trans-2,3-enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1;; (*TAIR) AT3G55360.1 (e_value=7e-160) | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310;; (*ITAG) Solyc05g054490.2.1 (e_value=5e-180) genomic_reference:SL2.40ch05 gene_region:63554153-63559157 transcript_region:SL2.40ch05:63554153..63559157- go_terms:GO:0016631 functional_description:"Trans-2-enoyl-CoA reductase (AHRD V1 **-* A9XUG8_GOSHI); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016631 NbS00027527g0013.1 protein AED:0.38 eAED:0.38 QI:0|0.77|0.8|1|0.66|0.8|10|0|402; (*GB) gi|255558990|ref|XP_002520518.1| (e_value=1e-111) protein with unknown function [Ricinus communis];; (*TAIR) AT1G07480.2 (e_value=6e-75) | Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296706-2299215 REVERSE LENGTH=375;; (*ITAG) Solyc06g076390.2.1 (e_value=2e-153) genomic_reference:SL2.40ch06 gene_region:43843183-43849644 transcript_region:SL2.40ch06:43843183..43849644- go_terms:GO:0003700 functional_description:"Transcription initiation factor IIA subunit 1 (AHRD V1 *-** TF2AA_DICDI); contains Interpro domain(s) IPR004855 Transcription factor IIA, alpha/beta subunit "; GO:0003700 NbS00027527g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|125; (*ITAG) Solyc06g076380.1.1 (e_value=7e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:43842038-43842325 transcript_region:SL2.40ch06:43842038..43842325+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027527g0009.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|82 NbS00001041g0010.1 protein AED:0.08 eAED:0.08 QI:397|0.6|0.5|1|0|0.16|6|0|176; (*GB) gi|224055015|ref|XP_002298402.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19855.1 (e_value=8e-62) | Symbols: | Chaperonin-like RbcX protein | chr5:6712166-6713445 REVERSE LENGTH=203;; (*ITAG) Solyc11g065740.1.1 (e_value=2e-104) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48417851-48421065 transcript_region:SL2.40ch11:48417851..48421065+ functional_description:"RbcX protein (AHRD V1 *-*- Q5W3L8_9NOST); contains Interpro domain(s) IPR003435 Chaperonin-like RbcX "; NbS00001041g0005.1 protein AED:0.77 eAED:0.96 QI:0|0|0|0.4|1|1|5|0|105; (*GB) gi|302142492|emb|CBI19695.3| (e_value=3e-23) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=1e-21) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=9e-23) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00001041g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0|0.75|0.33|0.25|4|0|405; (*GB) gi|82621148|gb|ABB86262.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|B2RYD2|ESRP1_RAT (e_value=3e-29) Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2;; (*TAIR) AT3G20890.1 (e_value=2e-79) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7319939-7321054 FORWARD LENGTH=292;; (*ITAG) Solyc11g065730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48394251-48402079 transcript_region:SL2.40ch11:48394251..48402079- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein H1 (AHRD V1 **-- Q6P0V0_DANRE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00001041g0112.1 protein AED:0.04 eAED:0.04 QI:291|1|0.66|1|1|1|3|0|129 NbS00001041g0113.1 protein AED:0.17 eAED:0.20 QI:0|1|0|1|1|1|2|0|462 NbS00001041g0114.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.77|1|0.87|0.88|9|32|711 NbS00001041g0102.1 protein AED:0.06 eAED:0.56 QI:359|0|0.5|1|0|0.5|2|0|134 NbS00046058g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|98; (*GB) gi|225456761|ref|XP_002269118.1| (e_value=3e-41) PREDICTED: glutathione S-transferase U9 [Vitis vinifera];; (*SWP) sp|Q9FUT0|GSTU9_ARATH (e_value=1e-33) Glutathione S-transferase U9 OS=Arabidopsis thaliana GN=GSTU9 PE=2 SV=1;; (*TAIR) AT5G62480.1 (e_value=9e-35) | Symbols: ATGSTU9, GST14, GST14B, GSTU9 | glutathione S-transferase tau 9 | chr5:25088775-25089566 REVERSE LENGTH=240;; (*ITAG) Solyc03g116120.1.1 (e_value=4e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59682321-59683060 transcript_region:SL2.40ch03:59682321..59683060- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 12 (AHRD V1 **** Q4LAW7_CAPCH); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00026619g0008.1 protein AED:0.12 eAED:0.34 QI:0|0|0.5|1|1|1|2|44|182 NbS00026619g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.78|0.66|1|0.78|0.6|15|0|988; (*GB) gi|225428201|ref|XP_002278951.1| (e_value=0.0) PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera];; (*SWP) sp|B9HQZ6|SYAP_POPTR (e_value=0.0) Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1;; (*TAIR) AT5G22800.1 (e_value=0.0) | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978;; (*ITAG) Solyc01g111990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89884444-89893360 transcript_region:SL2.40ch01:89884444..89893360+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** Q9FFC7_ARATH); contains Interpro domain(s) IPR002318 Alanyl-tRNA synthetase, class IIc "; GO:0000049 NbS00039777g0006.1 protein AED:0.08 eAED:0.08 QI:191|0.87|0.82|1|0.81|0.76|17|0|1288; (*GB) gi|65736533|dbj|BAD98515.1| (e_value=0.0) TONSOKU protein [Nicotiana tabacum];; (*SWP) sp|Q6Q4D0|TONS_ARATH (e_value=0.0) Protein TONSOKU OS=Arabidopsis thaliana GN=TSK PE=1 SV=2;; (*TAIR) AT3G18730.1 (e_value=0.0) | Symbols: TSK, MGO3, BRU1 | tetratricopeptide repeat (TPR)-containing protein | chr3:6446062-6453045 REVERSE LENGTH=1311;; (*ITAG) Solyc11g005690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:510171-525342 transcript_region:SL2.40ch11:510171..525342+ go_terms:GO:0005515,GO:0005488 functional_description:"Tetratricopeptide repeat family (AHRD V1 *--- B4VR69_9CYAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0005488 NbS00017899g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|583; (*GB) gi|297735496|emb|CBI17936.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FMU5|UTP18_ARATH (e_value=0.0) U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1;; (*TAIR) AT5G14050.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4533539-4535179 FORWARD LENGTH=546;; (*ITAG) Solyc10g080180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60867892-60869391 transcript_region:SL2.40ch10:60867892..60869391- go_terms:GO:0005515,GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein 18 (AHRD V1 **-- D0MWK6_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00017899g0008.1 protein AED:0.37 eAED:0.39 QI:141|0.66|0.5|1|0.33|0.25|4|0|154; (*GB) gi|147835847|emb|CAN70803.1| (e_value=2e-30) hypothetical protein VITISV_044067 [Vitis vinifera];; (*TAIR) AT1G75560.2 (e_value=5e-18) | Symbols: | zinc knuckle (CCHC-type) family protein | chr1:28371420-28372717 REVERSE LENGTH=257;; (*ITAG) Solyc10g054330.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50729498-50732695 transcript_region:SL2.40ch10:50729498..50732695+ go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 **-- B6T3W5_MAIZE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00006099g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|224105727|ref|XP_002313913.1| (e_value=3e-92) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g107020.2.1 (e_value=1e-110) genomic_reference:SL2.40ch01 gene_region:86462814-86464069 transcript_region:SL2.40ch01:86462814..86464069+ functional_description:"Predicted DNA damage inducible protein (ISS) (AHRD V1 **-- Q00VZ6_OSTTA)"; NbS00006099g0023.1 protein AED:0.17 eAED:0.17 QI:82|1|1|1|0.57|0.46|15|227|656; (*GB) gi|296083048|emb|CBI22452.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UBT6|POLK_HUMAN (e_value=7e-94) DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1;; (*TAIR) AT1G49980.1 (e_value=0.0) | Symbols: | DNA/RNA polymerases superfamily protein | chr1:18508026-18512111 FORWARD LENGTH=671;; (*ITAG) Solyc01g107010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86456783-86462375 transcript_region:SL2.40ch01:86456783..86462375+ go_terms:GO:0005515,GO:0003887 functional_description:"DNA polymerase IV (AHRD V1 *-** D6RLC7_COPC7); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0005515,GO:0003887 NbS00006099g0020.1 protein AED:0.35 eAED:0.35 QI:121|1|0.5|1|1|1|4|0|335; (*GB) gi|225428989|ref|XP_002265317.1| (e_value=4e-72) PREDICTED: uncharacterized protein LOC100263484 [Vitis vinifera];; (*TAIR) AT3G19650.1 (e_value=7e-41) | Symbols: | cyclin-related | chr3:6823543-6825174 FORWARD LENGTH=302;; (*ITAG) Solyc01g107030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86465054-86468000 transcript_region:SL2.40ch01:86465054..86468000+ functional_description:"Somatic embryogenesis related protein (AHRD V1 ***- B6TIS5_MAIZE)"; NbS00006099g0027.1 protein AED:0.05 eAED:0.06 QI:0|0.8|0.5|1|1|0.83|6|0|550; (*GB) gi|225428999|ref|XP_002264605.1| (e_value=0.0) PREDICTED: endo-1,4-beta-xylanase A-like [Vitis vinifera];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=8e-26) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33840.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g107000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86450406-86453610 transcript_region:SL2.40ch01:86450406..86453610- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00006099g0028.1 protein AED:0.25 eAED:0.25 QI:0|1|0.87|1|0.85|0.87|8|0|372; (*GB) gi|225428987|ref|XP_002265287.1| (e_value=0.0) PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis vinifera];; (*SWP) sp|A9A3L9|RLMN_NITMS (e_value=1e-75) Ribosomal RNA large subunit methyltransferase N OS=Nitrosopumilus maritimus (strain SCM1) GN=rlmN PE=3 SV=1;; (*TAIR) AT3G19630.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr3:6818676-6820674 REVERSE LENGTH=372;; (*ITAG) Solyc01g107040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86468483-86473122 transcript_region:SL2.40ch01:86468483..86473122- go_terms:GO:0051536,GO:0005737 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- D6TN06_9CHLR); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "; GO:0051536,GO:0005737 NbS00006099g0112.1 protein AED:0.03 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|656 NbS00006099g0113.1 protein AED:0.15 eAED:0.15 QI:179|0.9|0.90|1|0.9|1|11|601|614 NbS00006099g0114.1 protein AED:0.14 eAED:0.17 QI:0|0.75|0.4|1|1|1|5|0|364 NbS00006099g0107.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|121 NbS00006099g0108.1 protein AED:0.30 eAED:0.60 QI:0|0|0|1|1|1|4|0|218 NbS00011556g0006.1 protein AED:0.16 eAED:0.17 QI:179|0.75|0.66|1|0.37|0.44|9|0|750; (*GB) gi|296082631|emb|CBI21636.3| (e_value=5e-129) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5VYS8|TUT7_HUMAN (e_value=7e-14) Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1;; (*TAIR) AT3G45750.1 (e_value=2e-95) | Symbols: | Nucleotidyltransferase family protein | chr3:16793855-16797380 REVERSE LENGTH=682;; (*ITAG) Solyc09g091860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66425114-66432471 transcript_region:SL2.40ch09:66425114..66432471+ functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 *--- TRF5_ASHGO)"; NbS00011556g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.25|0.2|1|0|0.2|5|0|455; (*GB) gi|356507473|ref|XP_003522490.1| (e_value=3e-82) PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max];; (*SWP) sp|Q9FVQ0|YUC10_ARATH (e_value=8e-77) Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1;; (*TAIR) AT1G48910.1 (e_value=6e-78) | Symbols: YUC10 | Flavin-containing monooxygenase family protein | chr1:18091681-18093774 FORWARD LENGTH=383;; (*ITAG) Solyc09g091870.1.1 (e_value=2e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66432818-66436003 transcript_region:SL2.40ch09:66432818..66436003- go_terms:GO:0055114 functional_description:"Monooxygenase (AHRD V1 ***- B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0055114 NbS00008741g0007.1 protein AED:0.16 eAED:0.16 QI:610|1|1|1|1|1|2|1312|191; (*GB) gi|224109334|ref|XP_002333272.1| (e_value=4e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05830.1 (e_value=1e-54) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc09g011770.2.1 (e_value=2e-80) genomic_reference:SL2.40ch09 gene_region:5061936-5065593 transcript_region:SL2.40ch09:5061936..5065593- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00008741g0001.1 protein AED:0.25 eAED:0.25 QI:158|1|0.75|1|0.33|0|4|0|327; (*GB) gi|225440550|ref|XP_002276167.1| (e_value=3e-101) PREDICTED: uncharacterized protein LOC100244272 [Vitis vinifera];; (*TAIR) AT3G09250.1 (e_value=4e-84) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr3:2839080-2840294 FORWARD LENGTH=244;; (*ITAG) Solyc09g011730.2.1 (e_value=5e-129) genomic_reference:SL2.40ch09 gene_region:5012208-5015671 transcript_region:SL2.40ch09:5012208..5015671- functional_description:"3-dehydroquinate dehydratase (AHRD V1 *--- B5HIA9_STRPR)"; NbS00019029g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|92 NbS00019029g0008.1 protein AED:0.17 eAED:0.17 QI:301|1|1|1|0.88|0.9|10|391|250; (*GB) gi|1389654|dbj|BAA12918.1| (e_value=6e-150) cytosolic ascorbate peroxidase [Nicotiana tabacum];; (*SWP) sp|Q05431|APX1_ARATH (e_value=7e-134) L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2;; (*TAIR) AT1G07890.8 (e_value=5e-135) | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate peroxidase 1 | chr1:2438005-2439435 FORWARD LENGTH=250;; (*ITAG) Solyc06g005160.2.1 (e_value=4e-147) genomic_reference:SL2.40ch06 gene_region:182627-185280 transcript_region:SL2.40ch06:182627..185280+ go_terms:GO:0055114 functional_description:"Ascorbate peroxidase (AHRD V1 ***- Q9SMD3_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00019029g0007.1 protein AED:0.39 eAED:0.39 QI:188|1|1|1|1|1|3|147|84 NbS00036770g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|255543933|ref|XP_002513029.1| (e_value=6e-15) protein with unknown function [Ricinus communis];; (*ITAG) Solyc01g096510.2.1 (e_value=6e-38) genomic_reference:SL2.40ch01 gene_region:79357168-79357921 transcript_region:SL2.40ch01:79357168..79357921- functional_description:"Sigma factor binding protein 1 (AHRD V1 *-*- D1MWZ4_CITLA); contains Interpro domain(s) IPR008889 VQ "; NbS00039057g0002.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|431; (*GB) gi|359497575|ref|XP_003635570.1| (e_value=6e-166) PREDICTED: probable F-box protein At4g22030-like [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=3e-109) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G22030.1 (e_value=2e-110) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11672396-11675575 FORWARD LENGTH=626;; (*ITAG) Solyc02g080830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39529511-39530758 transcript_region:SL2.40ch02:39529511..39530758+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00039057g0009.1 protein AED:0.33 eAED:0.33 QI:222|0.83|0.85|1|0.33|0.71|7|350|193; (*GB) gi|351723819|ref|NP_001237804.1| (e_value=2e-47) uncharacterized protein LOC100499909 [Glycine max];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=2e-38) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G04470.1 (e_value=1e-39) | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:2227963-2229226 REVERSE LENGTH=190;; (*ITAG) Solyc02g080820.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:39520175-39524606 transcript_region:SL2.40ch02:39520175..39524606+ go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein PMP22 (AHRD V1 ***- B6UFM9_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00039057g0010.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|406; (*GB) gi|1707878|sp|P54260.1|GCST_SOLTU (e_value=0.0) RecName: Full=Aminomethyltransferase, mitochondrial; AltName: Full=Glycine cleavage system T protein; Short=GCVT; Flags: Precursor;; (*SWP) sp|P54260|GCST_SOLTU (e_value=0.0) Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1;; (*TAIR) AT1G11860.3 (e_value=0.0) | Symbols: | Glycine cleavage T-protein family | chr1:4001801-4003245 FORWARD LENGTH=408;; (*ITAG) Solyc02g080810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39515754-39519204 transcript_region:SL2.40ch02:39515754..39519204- go_terms:GO:0004375,GO:0005515,GO:0031405 functional_description:"Aminomethyltransferase (AHRD V1 ***- C6TF02_SOYBN); contains Interpro domain(s) IPR006223 Glycine cleavage system T protein "; GO:0004375,GO:0005515,GO:0031405 NbS00055256g0003.1 protein AED:0.17 eAED:0.17 QI:569|1|0.5|1|0|0.5|2|0|134; (*GB) gi|147854817|emb|CAN78601.1| (e_value=5e-60) hypothetical protein VITISV_007377 [Vitis vinifera];; (*TAIR) AT1G17100.1 (e_value=3e-22) | Symbols: | SOUL heme-binding family protein | chr1:5844766-5845539 FORWARD LENGTH=232;; (*ITAG) Solyc03g112650.2.1 (e_value=4e-77) genomic_reference:SL2.40ch03 gene_region:57076098-57078780 transcript_region:SL2.40ch03:57076098..57078780+ go_terms:GO:0020037 functional_description:"Soul heme-binding family protein (AHRD V1 **** D7KEL8_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0020037 NbS00002923g0004.1 protein AED:0.29 eAED:0.33 QI:0|0.33|0.28|1|0.16|0.14|7|0|524; (*GB) gi|147863413|emb|CAN81512.1| (e_value=0.0) hypothetical protein VITISV_001671 [Vitis vinifera];; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=0.0) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc06g072610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41164376-41170932 transcript_region:SL2.40ch06:41164376..41170932- go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00006746g0001.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|4|0|124; (*GB) gi|242037191|ref|XP_002465990.1| (e_value=1e-23) hypothetical protein SORBIDRAFT_01g049670 [Sorghum bicolor];; (*SWP) sp|Q9XGX7|TIM9_ORYSJ (e_value=2e-24) Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2;; (*TAIR) AT3G46560.1 (e_value=3e-22) | Symbols: TIM9, emb2474 | Tim10/DDP family zinc finger protein | chr3:17138632-17139301 FORWARD LENGTH=93;; (*ITAG) Solyc10g086510.1.1 (e_value=3e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64631079-64633156 transcript_region:SL2.40ch10:64631079..64633156+ go_terms:GO:0042719 functional_description:"Mitochondrial import inner membrane translocase subunit tim9 (AHRD V1 ***- A6MZE3_ORYSI); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0042719 NbS00020564g0001.1 protein AED:0.08 eAED:0.08 QI:326|1|1|1|1|1|3|165|165; (*GB) gi|187942405|gb|ACD40011.1| (e_value=1e-101) pollen-specific C2 domain containing protein [Nicotiana sp. variant 'Rastroensis'];; (*SWP) sp|Q8LFN9|AGD13_ARATH (e_value=4e-39) Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1;; (*TAIR) AT3G17980.1 (e_value=2e-95) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc06g068940.2.1 (e_value=3e-105) genomic_reference:SL2.40ch06 gene_region:39155066-39156576 transcript_region:SL2.40ch06:39155066..39156576+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7L7Y3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00020564g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.8|0.5|0.83|1|1|6|0|359; (*GB) gi|389986109|gb|AFL46172.1| (e_value=0.0) jasmonate ZIM domain protein g [Nicotiana attenuata];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=5e-20) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.3 (e_value=3e-21) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6121143-6122691 FORWARD LENGTH=319;; (*ITAG) Solyc03g118540.2.1 (e_value=9e-71) genomic_reference:SL2.40ch03 gene_region:61483425-61486803 transcript_region:SL2.40ch03:61483425..61486803+ go_terms:GO:0042802 functional_description:"Protein TIFY 6B (AHRD V1 **-- TIF6B_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00003676g0003.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|625; (*GB) gi|365222880|gb|AEW69792.1| (e_value=0.0) Hop-interacting protein THI029 [Solanum lycopersicum];; (*SWP) sp|O54922|EXOC7_RAT (e_value=1e-18) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G58430.1 (e_value=0.0) | Symbols: ATEXO70B1, EXO70B1 | exocyst subunit exo70 family protein B1 | chr5:23621460-23623334 REVERSE LENGTH=624;; (*ITAG) Solyc08g066070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:51728386-51730281 transcript_region:SL2.40ch08:51728386..51730281- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00003676g0020.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.8|0.75|0.4|5|0|315; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-23) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc03g122200.1.1 (e_value=6e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00003676g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.66|1|0|0.66|3|0|1095; (*GB) gi|225434576|ref|XP_002279036.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241532 [Vitis vinifera];; (*TAIR) AT2G29970.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr2:12776601-12779784 FORWARD LENGTH=1002;; (*ITAG) Solyc09g055230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:33349408-33361084 transcript_region:SL2.40ch09:33349408..33361084+ go_terms:GO:0005524 functional_description:"ATP-dependent Clp protease ATP-binding subunit (AHRD V1 *--- A2RIW9_LACLM); contains Interpro domain(s) IPR001270 Chaperonin clpA/B "; GO:0005524 NbS00003676g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.33|1|1|1|3|0|353; (*GB) gi|297745814|emb|CBI15870.3| (e_value=5e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22927|GDL42_ARATH (e_value=3e-134) GDSL esterase/lipase At2g30310 OS=Arabidopsis thaliana GN=At2g30310 PE=2 SV=1;; (*TAIR) AT2G30310.1 (e_value=3e-135) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:12923055-12924371 FORWARD LENGTH=359;; (*ITAG) Solyc09g030370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19776545-19777764 transcript_region:SL2.40ch09:19776545..19777764+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g30310 (AHRD V1 ***- GDL42_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003676g0019.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|165; (*GB) gi|325610393|gb|ADZ36360.1| (e_value=3e-49) NADH-plastoquinone oxidoreductase subunit 2 [Symplocos paniculata];; (*SWP) sp|P0CC79|NU2C2_JASNU (e_value=2e-50) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Jasminum nudiflorum GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=2e-22) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc09g061460.1.1 (e_value=4e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54753885-54754777 transcript_region:SL2.40ch09:54753885..54754777+ go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D2KLR3_OLEEU); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00003676g0024.1 protein AED:0.16 eAED:0.66 QI:0|0|0|1|0|0|3|0|76 NbS00003676g0018.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|147804845|emb|CAN66877.1| (e_value=1e-31) hypothetical protein VITISV_009278 [Vitis vinifera];; (*ITAG) Solyc11g021110.1.1 (e_value=5e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13367903-13368452 transcript_region:SL2.40ch11:13367903..13368452- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WEQ5_9ROSI); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00004655g0001.1 protein AED:0.14 eAED:0.20 QI:140|0|0.5|1|0|0.5|2|0|528; (*GB) gi|225435385|ref|XP_002282624.1| (e_value=1e-132) PREDICTED: uncharacterized protein LOC100260316 [Vitis vinifera];; (*SWP) sp|Q8CE22|DMTF1_MOUSE (e_value=1e-17) Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus GN=Dmtf1 PE=1 SV=2;; (*TAIR) AT5G41020.1 (e_value=2e-116) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc08g007300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1854448-1855449 transcript_region:SL2.40ch08:1854448..1855449+ go_terms:GO:0003677 functional_description:"Cyclin-D-binding Myb-like transcription factor 1 (AHRD V1 ***- DMTF1_MOUSE); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00004655g0005.1 protein AED:0.30 eAED:0.30 QI:92|1|1|1|0.66|0.75|4|227|297; (*GB) gi|225469372|ref|XP_002263193.1| (e_value=3e-128) PREDICTED: homeobox-leucine zipper protein HAT4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q05466|HAT4_ARATH (e_value=5e-95) Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1;; (*TAIR) AT4G16780.1 (e_value=3e-96) | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein 2 | chr4:9449291-9450604 FORWARD LENGTH=284;; (*ITAG) Solyc08g078300.2.1 (e_value=6e-130) genomic_reference:SL2.40ch08 gene_region:59267579-59269933 transcript_region:SL2.40ch08:59267579..59269933- go_terms:GO:0043565,GO:0042803 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q40781_PIMBR); contains Interpro domain(s) IPR006712 HD-ZIP protein, N-terminal "; GO:0043565,GO:0042803 NbS00014699g0015.1 protein AED:0.06 eAED:0.06 QI:909|0.8|0.66|1|0.8|0.66|6|472|284; (*GB) gi|255553837|ref|XP_002517959.1| (e_value=8e-157) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03420.1 (e_value=5e-132) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc07g054270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59932385-59934770 transcript_region:SL2.40ch07:59932385..59934770- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00014699g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0|2|140|117; (*GB) gi|224127148|ref|XP_002329412.1| (e_value=6e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S8I4|EPF1_ARATH (e_value=4e-34) Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=2 SV=1;; (*TAIR) AT2G20875.1 (e_value=3e-35) | Symbols: EPF1 | epidermal patterning factor 1 | chr2:8983179-8983579 REVERSE LENGTH=104;; (*ITAG) Solyc12g010720.1.1 (e_value=3e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3641590-3641784 transcript_region:SL2.40ch12:3641590..3641784+ functional_description:"Protein EPIDERMAL PATTERNING FACTOR 1 (AHRD V1 ***- EPF1_ARATH)"; NbS00014699g0009.1 protein AED:0.03 eAED:0.12 QI:0|0|0|1|0|0|2|0|532; (*GB) gi|147842262|emb|CAN73939.1| (e_value=8e-38) hypothetical protein VITISV_031601 [Vitis vinifera];; (*ITAG) Solyc07g054230.2.1 (e_value=8e-161) genomic_reference:SL2.40ch07 gene_region:59913582-59915470 transcript_region:SL2.40ch07:59913582..59915470- functional_description:"Unknown Protein (AHRD V1)"; NbS00014699g0014.1 protein AED:0.29 eAED:0.38 QI:0|0|0|1|0|0|5|0|288; (*GB) gi|54261828|gb|AAV31178.1| (e_value=3e-28) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc01g057890.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:57024979-57027433 transcript_region:SL2.40ch01:57024979..57027433- functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9LTL3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00047599g0003.1 protein AED:0.07 eAED:0.09 QI:387|0.5|0.66|1|0|0.33|3|0|613; (*GB) gi|224111934|ref|XP_002332866.1| (e_value=1e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=1e-124) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38260.1 (e_value=3e-136) | Symbols: | Protein kinase superfamily protein | chr5:15283692-15285837 REVERSE LENGTH=638;; (*ITAG) Solyc03g119240.2.1 (e_value=2e-164) genomic_reference:SL2.40ch03 gene_region:61938748-61942292 transcript_region:SL2.40ch03:61938748..61942292+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM23_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002418g0201.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|316 NbS00051033g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|437; (*GB) gi|225425196|ref|XP_002266098.1| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100260747 [Vitis vinifera];; (*TAIR) AT1G12060.1 (e_value=6e-12) | Symbols: ATBAG5, BAG5 | BCL-2-associated athanogene 5 | chr1:4076334-4076981 FORWARD LENGTH=215;; (*ITAG) Solyc06g072430.1.1 (e_value=5e-75) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41073324-41074445 transcript_region:SL2.40ch06:41073324..41074445+ go_terms:GO:0006915 functional_description:"Bcl-2-associated athanogene-like protein (AHRD V1 *-*- D1MIX4_VITVI); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00002344g0006.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0.6|1|1|1|5|323|175; (*GB) gi|115502466|sp|P43349.2|TCTP_SOLTU (e_value=8e-74) RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltName: Full=p23;; (*SWP) sp|P43349|TCTP_SOLTU (e_value=2e-75) Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2;; (*TAIR) AT3G05540.1 (e_value=2e-63) | Symbols: | Methionine sulfoxide reductase (MSS4-like) family protein | chr3:1606487-1608030 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=3e-77) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00003309g0009.1 protein AED:0.07 eAED:0.19 QI:0|0|0|1|1|1|2|0|106; (*GB) gi|57014007|ref|YP_173478.1| (e_value=1e-43) hypothetical protein NitaMp141 [Nicotiana tabacum]; NbS00003309g0040.1 protein AED:0.33 eAED:0.35 QI:0|0|0.25|1|0|0|4|0|190; (*GB) gi|225242|prf||1211235CA (e_value=2e-67) ORF 1708;; (*SWP) sp|P09976|YCF2_TOBAC (e_value=2e-68) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=3e-52) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-68) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00003309g0044.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.71|0.16|0.14|7|0|403; (*GB) gi|255590603|ref|XP_002535312.1| (e_value=3e-82) 60S ribosomal protein L16, putative [Ricinus communis];; (*SWP) sp|Q04715|RM16_PETHY (e_value=3e-68) 60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1;; (*ITAG) ATMG00080.1 (e_value=3e-68) | Symbols: RPL16 | ribosomal protein L16 | chrM:25076-25615 REVERSE LENGTH=179;; (*ITAG) Solyc12g039010.1.1 (e_value=6e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:37199046-37202368 transcript_region:SL2.40ch12:37199046..37202368+ go_terms:GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- A8DBV5_CAPAN); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 NbS00003309g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|109; (*ITAG) Solyc00g019990.1.1 (e_value=3e-21) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:11804753-11804968 transcript_region:SL2.40ch00:11804753..11804968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003309g0026.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|80; (*GB) gi|57014003|ref|YP_173474.1| (e_value=6e-33) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=9e-22) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=3e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00003309g0048.1 protein AED:0.27 eAED:0.29 QI:0|0.4|0.16|1|0|0|6|0|228; (*GB) gi|323435148|ref|YP_004222366.1| (e_value=3e-18) hypothetical protein BevumaM_p133 [Beta vulgaris subsp. maritima];; (*ITAG) Solyc01g020460.1.1 (e_value=2e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:30938856-30942232 transcript_region:SL2.40ch01:30938856..30942232- go_terms:GO:0005840 functional_description:"ORF65d (AHRD V1 *-*- A4QMH1_PINKO); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00003309g0008.1 protein AED:0.49 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|57013939|ref|YP_173412.1| (e_value=8e-81) cytochrome oxidase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P27168|COX2_DAUCA (e_value=4e-76) Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1;; (*ITAG) ATMG00160.1 (e_value=9e-74) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=7e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbS00003309g0047.1 protein AED:0.39 eAED:0.55 QI:0|0|0|1|0.5|0.33|3|0|106; (*ITAG) Solyc00g019970.2.1 (e_value=2e-21) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003309g0007.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.33|1|1|3|0|186; (*ITAG) Solyc11g039970.1.1 (e_value=3e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003309g0046.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.16|0.4|0.5|6|0|236 NbS00003309g0045.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|0|0|3|0|315; (*GB) gi|57013937|ref|YP_173410.1| (e_value=0.0) ribosomal protein S3 [Nicotiana tabacum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=0.0) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=4e-138) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=2e-166) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00003309g0033.1 protein AED:0.35 eAED:0.58 QI:0|0|0|1|0|0|3|0|305; (*GB) gi|57013905|ref|YP_173378.1| (e_value=1e-116) hypothetical protein NitaMp032 [Nicotiana tabacum]; NbS00003309g0038.1 protein AED:0.28 eAED:0.37 QI:13|0|0|1|0|0|2|0|139; (*GB) gi|57014006|ref|YP_173477.1| (e_value=1e-28) hypothetical protein NitaMp140 [Nicotiana tabacum];; (*ITAG) Solyc00g044550.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13376775-13376948 transcript_region:SL2.40ch00:13376775..13376948+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003309g0042.1 protein AED:0.50 eAED:0.72 QI:0|0|0|1|0|0|3|0|135; (*GB) gi|81301612|ref|YP_398908.1| (e_value=2e-21) Ycf2 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=5e-23) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=7e-22) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00003309g0032.1 protein AED:0.44 eAED:0.47 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|57013907|ref|YP_173380.1| (e_value=8e-64) ribosomal protein S12 [Nicotiana tabacum];; (*SWP) sp|P68536|RT12_PETPA (e_value=1e-64) Ribosomal protein S12, mitochondrial OS=Petunia parodii GN=RPS12 PE=3 SV=1;; (*ITAG) ATMG00980.1 (e_value=3e-60) | Symbols: RPSL2 | Ribosomal protein S12/S23 family protein | chrM:260224-260601 REVERSE LENGTH=125;; (*ITAG) Solyc11g056360.1.1 (e_value=9e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43110058-43110498 transcript_region:SL2.40ch11:43110058..43110498- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- C8PSU8_9SPIO); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0003735,GO:0005515 NbS00003309g0043.1 protein AED:0.18 eAED:0.49 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|359483985|ref|XP_003633048.1| (e_value=2e-32) PREDICTED: ribosomal protein S19, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P27527|RT19_PETHY (e_value=1e-29) Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2;; (*TAIR) AT5G47320.1 (e_value=4e-19) | Symbols: RPS19 | ribosomal protein S19 | chr5:19203801-19204951 FORWARD LENGTH=212;; (*ITAG) Solyc11g056480.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43155644-43156396 transcript_region:SL2.40ch11:43155644..43156396+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- D0GL35_9FUSO); contains Interpro domain(s) IPR002222 Ribosomal protein S19/S15 "; GO:0005840 NbS00003309g0037.1 protein AED:0.38 eAED:0.53 QI:0|0|0|1|0|0|3|0|101 NbS00003309g0036.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|57013906|ref|YP_173379.1| (e_value=6e-34) NADH dehydrogenase subunit 3 [Nicotiana tabacum];; (*SWP) sp|P27062|NU3M_PANGI (e_value=9e-35) NADH-ubiquinone oxidoreductase chain 3 OS=Panax ginseng GN=ND3 PE=3 SV=1;; (*ITAG) ATMG00990.1 (e_value=1e-30) | Symbols: NAD3 | NADH dehydrogenase 3 | chrM:260647-261006 REVERSE LENGTH=119;; (*ITAG) Solyc11g056370.1.1 (e_value=2e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43110547-43110903 transcript_region:SL2.40ch11:43110547..43110903- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit (AHRD V1 ***- A4U0C2_9PROT); contains Interpro domain(s) IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 "; GO:0055114 NbS00003309g0041.1 protein AED:0.52 eAED:0.64 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|336445348|gb|AEI58742.1| (e_value=4e-24) photosystem II D1 protein, partial (chloroplast) [Baldellia ranunculoides];; (*SWP) sp|P27201|PSBA_SPIOG (e_value=1e-24) Photosystem Q(B) protein OS=Spirodela oligorhiza GN=psbA PE=3 SV=3;; (*ITAG) ATCG00020.1 (e_value=1e-25) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00003309g0034.1 protein AED:0.51 eAED:0.75 QI:0|0|0|0.5|0|0|2|0|67 NbS00018030g0007.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|330; (*GB) gi|6683539|dbj|BAA89236.1| (e_value=2e-141) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT3G01360.2 (e_value=8e-78) | Symbols: | Family of unknown function (DUF716) | chr3:137772-138731 REVERSE LENGTH=319;; (*ITAG) Solyc02g087260.1.1 (e_value=2e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44301840-44302850 transcript_region:SL2.40ch02:44301840..44302850+ functional_description:"TMV response-related protein (AHRD V1 *--- B6UBT3_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00018030g0025.1 protein AED:0.23 eAED:0.23 QI:0|0.93|0.87|1|0.86|0.81|16|381|863; (*GB) gi|4165154|gb|AAD08711.1| (e_value=0.0) topoisomerase I [Nicotiana tabacum];; (*SWP) sp|P30181|TOP1_ARATH (e_value=0.0) DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1;; (*TAIR) AT5G55310.1 (e_value=0.0) | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta | chr5:22430389-22434590 REVERSE LENGTH=917;; (*ITAG) Solyc07g049720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57386210-57396174 transcript_region:SL2.40ch07:57386210..57396174- go_terms:GO:0003917 functional_description:"DNA topoisomerase I (AHRD V1 **** Q9XGL1_DAUCA); contains Interpro domain(s) IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type "; GO:0003917 NbS00018030g0004.1 protein AED:0.13 eAED:0.68 QI:128|0|0.5|1|0|0.5|2|0|74 NbS00018030g0023.1 protein AED:0.15 eAED:0.15 QI:0|1|0.91|1|1|1|12|680|1107; (*GB) gi|225452572|ref|XP_002275511.1| (e_value=0.0) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=1e-111) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1;; (*TAIR) AT3G01370.1 (e_value=0.0) | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011;; (*ITAG) Solyc02g087250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0010181,GO:0003723 NbS00018030g0028.1 protein AED:0.15 eAED:0.15 QI:141|0.91|0.92|0.92|1|1|13|0|600; (*GB) gi|225447089|ref|XP_002270622.1| (e_value=0.0) PREDICTED: condensin complex subunit 2-like [Vitis vinifera];; (*SWP) sp|Q8C156|CND2_MOUSE (e_value=5e-23) Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1;; (*TAIR) AT2G32590.1 (e_value=0.0) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). | chr2:13829420-13833209 REVERSE LENGTH=671;; (*ITAG) Solyc07g049680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57358325-57364429 transcript_region:SL2.40ch07:57358325..57364429+ go_terms:GO:0005515 functional_description:"Condensin complex subunit 2 (AHRD V1 ***- Q564K3_ARATH); contains Interpro domain(s) IPR008418 Barren "; GO:0005515 NbS00018030g0020.1 protein AED:0.27 eAED:0.30 QI:18|0.6|0.66|1|0|0.33|6|749|249; (*GB) gi|225452568|ref|XP_002280628.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100250700 [Vitis vinifera];; (*ITAG) Solyc02g087220.2.1 (e_value=9e-74) genomic_reference:SL2.40ch02 gene_region:44253844-44257761 transcript_region:SL2.40ch02:44253844..44257761- functional_description:"Protein bicaudal C homolog 1-B (AHRD V1 *--- BIC1B_XENLA); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00018030g0024.1 protein AED:0.21 eAED:0.34 QI:0|0.8|0.83|1|0.8|0.66|6|357|210; (*GB) gi|225452574|ref|XP_002280727.1| (e_value=1e-102) PREDICTED: protein CREG1 [Vitis vinifera];; (*SWP) sp|O75629|CREG1_HUMAN (e_value=3e-34) Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1;; (*TAIR) AT2G04690.1 (e_value=3e-84) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr2:1644628-1646179 FORWARD LENGTH=210;; (*ITAG) Solyc02g087250.2.1 (e_value=1e-117) genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0010181,GO:0003723 NbS00018030g0021.1 protein AED:0.41 eAED:0.55 QI:0|0.66|0.25|1|1|1|4|0|89; (*GB) gi|14275859|emb|CAC39620.1| (e_value=3e-61) ferredoxin-thioredoxin-reductase catalytic subunit B [Solanum tuberosum];; (*SWP) sp|O49856|FTRC_SOYBN (e_value=3e-61) Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1;; (*TAIR) AT2G04700.1 (e_value=3e-61) | Symbols: | ferredoxin thioredoxin reductase catalytic beta chain family protein | chr2:1646961-1648345 FORWARD LENGTH=146;; (*ITAG) Solyc02g087230.2.1 (e_value=4e-64) genomic_reference:SL2.40ch02 gene_region:44259650-44265112 transcript_region:SL2.40ch02:44259650..44265112- go_terms:GO:0055114 functional_description:"Ferredoxin-thioredoxin reductase catalytic chain (AHRD V1 ***- B6TNR7_MAIZE); contains Interpro domain(s) IPR004209 Ferredoxin thioredoxin reductase, beta subunit "; GO:0055114 NbS00018030g0031.1 protein AED:0.19 eAED:0.91 QI:45|0.5|0|1|0|0|3|0|126 NbS00039762g0004.1 protein AED:0.01 eAED:0.01 QI:17|1|1|1|1|1|2|139|360; (*GB) gi|225446491|ref|XP_002278211.1| (e_value=3e-176) PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera];; (*SWP) sp|Q6VMW0|Q8OMT_MENPI (e_value=2e-123) 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=4e-67) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc03g097700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53476300-53478085 transcript_region:SL2.40ch03:53476300..53478085- go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00039762g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|106; (*SWP) sp|P81370|TLP_ACTDE (e_value=4e-13) Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2;; (*TAIR) AT4G11650.1 (e_value=7e-12) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc12g056380.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47675054-47675743 transcript_region:SL2.40ch12:47675054..47675743+ functional_description:"Osmotin-like protein II (Fragment) (AHRD V1 **-- Q2HPG4_GOSHI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00053269g0011.1 protein AED:0.07 eAED:0.07 QI:98|0.83|0.85|1|0.66|0.85|7|471|274; (*GB) gi|350535903|ref|NP_001234731.1| (e_value=3e-148) 5-formyltetrahydrofolate cycloligase [Solanum lycopersicum];; (*SWP) sp|Q9XWE6|MTHFS_CAEEL (e_value=3e-16) Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=2 SV=1;; (*TAIR) AT5G13050.1 (e_value=1e-100) | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase | chr5:4136912-4138711 REVERSE LENGTH=277;; (*ITAG) Solyc03g113590.2.1 (e_value=6e-151) genomic_reference:SL2.40ch03 gene_region:57721492-57728469 transcript_region:SL2.40ch03:57721492..57728469- go_terms:GO:0030272 functional_description:"5-formyltetrahydrofolate cyclo-ligase (AHRD V1 **** B9I331_POPTR); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0030272 NbS00053269g0007.1 protein AED:0.20 eAED:0.20 QI:88|0.87|0.88|1|0.5|0.66|9|1131|357; (*GB) gi|225456594|ref|XP_002267234.1| (e_value=0.0) PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 [Vitis vinifera];; (*SWP) sp|Q8VYP6|NOL9_ARATH (e_value=2e-155) Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana GN=At5g11010 PE=2 SV=1;; (*TAIR) AT5G11010.3 (e_value=2e-156) | Symbols: | Pre-mRNA cleavage complex II protein family | chr5:3484176-3486067 FORWARD LENGTH=368;; (*ITAG) Solyc03g113610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57734164-57739928 transcript_region:SL2.40ch03:57734164..57739928- functional_description:"Protein CLP1 homolog (AHRD V1 **-- CLP1_BRUMA); contains Interpro domain(s) IPR012581 NUC156 "; NbS00053269g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|1|1|3|0|605; (*GB) gi|255540837|ref|XP_002511483.1| (e_value=0.0) hypothetical protein RCOM_1512920 [Ricinus communis];; (*TAIR) AT1G74830.1 (e_value=1e-133) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc03g113600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57730078-57733020 transcript_region:SL2.40ch03:57730078..57733020+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00018702g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|109; (*ITAG) Solyc02g071950.1.1 (e_value=6e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:35877359-35877661 transcript_region:SL2.40ch02:35877359..35877661+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018702g0018.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0.5|0.33|3|0|376; (*GB) gi|225443704|ref|XP_002264996.1| (e_value=3e-106) PREDICTED: CTD small phosphatase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9PTJ6|CTDSL_CHICK (e_value=7e-43) CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2;; (*TAIR) AT5G45700.1 (e_value=4e-66) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18537378-18538196 FORWARD LENGTH=272;; (*ITAG) Solyc02g071930.1.1 (e_value=1e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35872771-35873649 transcript_region:SL2.40ch02:35872771..35873649+ go_terms:GO:0008420 functional_description:"CTD small phosphatase-like protein (AHRD V1 *-** C3KI43_ANOFI); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0008420 NbS00018702g0003.1 protein AED:0.27 eAED:0.29 QI:0|0.33|0.28|1|0.83|0.71|7|296|333; (*GB) gi|107953720|gb|ABF85695.1| (e_value=2e-123) potassium channel [Nicotiana rustica];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-80) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-81) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=4e-114) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00028588g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|799; (*GB) gi|359479927|ref|XP_003632376.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14240.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:4741637-4743964 REVERSE LENGTH=775;; (*ITAG) Solyc02g021220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:12919948-12922332 transcript_region:SL2.40ch02:12919948..12922332- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00028588g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.77|0.7|0.9|1|1|10|288|667; (*GB) gi|225463789|ref|XP_002267971.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243889 [Vitis vinifera];; (*TAIR) AT5G23390.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr5:7870719-7874283 REVERSE LENGTH=730;; (*ITAG) Solyc02g050140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:24505335-24528424 transcript_region:SL2.40ch02:24505335..24528424+ functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00012608g0015.1 protein AED:0.49 eAED:0.79 QI:0|0|0|0.5|1|1|4|0|124; (*GB) gi|224099487|ref|XP_002311503.1| (e_value=4e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01460.2 (e_value=4e-40) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:206136-211765 FORWARD LENGTH=954;; (*ITAG) Solyc05g007990.2.1 (e_value=7e-45) genomic_reference:SL2.40ch05 gene_region:2409481-2425202 transcript_region:SL2.40ch05:2409481..2425202- go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0016301 NbS00012608g0016.1 protein AED:0.17 eAED:0.17 QI:0|1|0.8|1|0.75|0.6|5|337|207; (*GB) gi|1781299|emb|CAA70700.1| (e_value=7e-66) transformer-SR ribonucleoprotein [Nicotiana tabacum];; (*SWP) sp|Q10422|YDC1_SCHPO (e_value=1e-17) Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1;; (*TAIR) AT4G35785.1 (e_value=2e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=238;; (*ITAG) Solyc02g061840.2.1 (e_value=6e-67) genomic_reference:SL2.40ch02 gene_region:27933230-27938206 transcript_region:SL2.40ch02:27933230..27938206- go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00012608g0017.1 protein AED:0.22 eAED:0.23 QI:0|0.42|0.12|1|0.14|0.12|8|0|481; (*GB) gi|356538341|ref|XP_003537662.1| (e_value=8e-148) PREDICTED: phospholipase D delta-like isoform 3 [Glycine max];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=6e-137) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=2e-141) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc02g061850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00012608g0018.1 protein AED:0.37 eAED:0.37 QI:0|0.6|0.33|0.83|0.4|0.66|6|0|277; (*GB) gi|224117208|ref|XP_002331748.1| (e_value=2e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=5e-74) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=3e-75) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc02g061850.2.1 (e_value=3e-96) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00045688g0011.1 protein AED:0.03 eAED:0.03 QI:56|1|1|1|1|1|2|336|124; (*GB) gi|356554173|ref|XP_003545423.1| (e_value=5e-66) PREDICTED: pre-mRNA branch site p14-like protein-like [Glycine max];; (*SWP) sp|Q9FMP4|PM14_ARATH (e_value=2e-61) Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1;; (*TAIR) AT5G12190.1 (e_value=1e-62) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3940731-3941105 REVERSE LENGTH=124;; (*ITAG) Solyc01g008360.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:2474504-2476439 transcript_region:SL2.40ch01:2474504..2476439+ go_terms:GO:0005515 functional_description:"Pre-mRNA branch site p14-like protein (AHRD V1 **-- B6T0W0_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00045688g0003.1 protein AED:0.16 eAED:0.16 QI:10|0|0.5|1|0|0.5|2|0|366; (*GB) gi|359485617|ref|XP_003633296.1| (e_value=9e-124) PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera];; (*SWP) sp|Q9SY75|PPR30_ARATH (e_value=1e-82) Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1;; (*TAIR) AT1G10330.1 (e_value=9e-84) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:3388747-3390150 FORWARD LENGTH=467;; (*ITAG) Solyc01g005790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:505584-506960 transcript_region:SL2.40ch01:505584..506960- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KKP4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00045688g0010.1 protein AED:0.29 eAED:0.29 QI:0|1|0.90|1|0.9|0.81|11|434|361; (*GB) gi|77745499|gb|ABB02648.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|O24412|PSD7_ARATH (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1;; (*TAIR) AT5G05780.1 (e_value=0.0) | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit 8A | chr5:1735862-1738176 FORWARD LENGTH=308;; (*ITAG) Solyc01g008370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2477506-2483463 transcript_region:SL2.40ch01:2477506..2483463- go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J8V5_CHLRE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515,GO:0004175 NbC25343935g0002.1 protein AED:0.36 eAED:0.55 QI:0|0|0|1|0|0|2|0|52 NbS00045866g0004.1 protein AED:0.35 eAED:0.35 QI:250|1|1|1|1|1|4|517|168; (*GB) gi|225446505|ref|XP_002278607.1| (e_value=2e-83) PREDICTED: OPA3-like protein [Vitis vinifera];; (*SWP) sp|Q9P7W0|OPA3_SCHPO (e_value=1e-17) OPA3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.11 PE=2 SV=1;; (*TAIR) AT1G28510.1 (e_value=2e-69) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc07g053490.2.1 (e_value=1e-111) genomic_reference:SL2.40ch07 gene_region:59257198-59261292 transcript_region:SL2.40ch07:59257198..59261292- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00059272g0003.1 protein AED:0.00 eAED:0.00 QI:73|1|1|1|0|0|2|0|157; (*GB) gi|224124540|ref|XP_002319357.1| (e_value=4e-84) predicted protein [Populus trichocarpa];; (*TAIR) AT1G03650.1 (e_value=9e-78) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:910249-911103 REVERSE LENGTH=158;; (*ITAG) Solyc12g010680.1.1 (e_value=1e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3618709-3620479 transcript_region:SL2.40ch12:3618709..3620479+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine acetyltransferase (AHRD V1 **** D2RGT9_ARCPA); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00017073g0011.1 protein AED:0.17 eAED:0.20 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-25) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00009853g0006.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|1|1|3|0|385; (*GB) gi|225432828|ref|XP_002279593.1| (e_value=0.0) PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LIK7|ACA13_ARATH (e_value=2e-170) Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=2 SV=1;; (*TAIR) AT3G22910.1 (e_value=1e-171) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:8116335-8119388 REVERSE LENGTH=1017;; (*ITAG) Solyc07g008320.2.1 (e_value=2e-128) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00009853g0021.1 protein AED:0.21 eAED:0.35 QI:0|0|0|0.25|1|1|4|0|247; (*GB) gi|356521823|ref|XP_003529550.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100816858 [Glycine max];; (*TAIR) AT3G06778.1 (e_value=8e-34) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:2140249-2141437 REVERSE LENGTH=229;; (*ITAG) Solyc01g065570.2.1 (e_value=1e-87) genomic_reference:SL2.40ch01 gene_region:64323619-64325092 transcript_region:SL2.40ch01:64323619..64325092+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00009853g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|3|0|136; (*GB) gi|297737121|emb|CBI26322.3| (e_value=3e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=1e-29) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=8e-31) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc07g008320.2.1 (e_value=8e-23) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00009853g0024.1 protein AED:0.07 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|534; (*GB) gi|224099859|ref|XP_002311648.1| (e_value=8e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63978474-63981232 transcript_region:SL2.40ch09:63978474..63981232+ go_terms:GO:0020037,GO:0055114 functional_description:"related to Populus trichocarpa predicted protein XM_002311612.1"; GO:0020037,GO:0055114 NbS00009853g0022.1 protein AED:0.24 eAED:0.25 QI:0|0.76|0.66|0.94|0.88|0.83|18|0|620; (*GB) gi|296083316|emb|CBI22952.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LRZ3|PUM24_ARATH (e_value=0.0) Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1;; (*TAIR) AT3G16810.1 (e_value=0.0) | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641;; (*ITAG) Solyc01g065580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64325048-64330129 transcript_region:SL2.40ch01:64325048..64330129- go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein KIAA0020 (AHRD V1 ***- B5X3V8_SALSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00009853g0020.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|115; (*ITAG) Solyc09g082900.2.1 (e_value=3e-24) genomic_reference:SL2.40ch09 gene_region:63978474-63981232 transcript_region:SL2.40ch09:63978474..63981232+ go_terms:GO:0020037,GO:0055114 functional_description:"related to Populus trichocarpa predicted protein XM_002311612.1"; GO:0020037,GO:0055114 NbS00009853g0108.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|0.75|1|5|0|468 NbS00009853g0102.1 protein AED:0.54 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|113 NbC24344652g0003.1 protein AED:0.13 eAED:0.13 QI:6|1|0.66|1|0.5|0.66|3|0|78; (*GB) gi|225426846|ref|XP_002276758.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera];; (*ITAG) Solyc08g080410.2.1 (e_value=5e-32) genomic_reference:SL2.40ch08 gene_region:60862050-60868830 transcript_region:SL2.40ch08:60862050..60868830- functional_description:"UBX domain-containing protein (AHRD V1 ***- D7MDX6_ARALY); contains Interpro domain(s) IPR001012 UBX "; NbS00007169g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|225452101|ref|XP_002284159.1| (e_value=5e-48) PREDICTED: uncharacterized protein LOC100254978 [Vitis vinifera];; (*TAIR) AT5G16200.1 (e_value=3e-19) | Symbols: | 50S ribosomal protein-related | chr5:5289659-5290150 REVERSE LENGTH=163;; (*ITAG) Solyc02g086260.1.1 (e_value=4e-76) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:43554211-43554672 transcript_region:SL2.40ch02:43554211..43554672- functional_description:"Unknown Protein (AHRD V1)"; NbS00029858g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|2|0|212; (*ITAG) Solyc07g063670.2.1 (e_value=2e-39) genomic_reference:SL2.40ch07 gene_region:63302957-63304266 transcript_region:SL2.40ch07:63302957..63304266+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029858g0016.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.66|0.5|0.66|3|0|315; (*GB) gi|359485725|ref|XP_003633323.1| (e_value=7e-83) PREDICTED: uncharacterized protein C167.05-like isoform 4 [Vitis vinifera];; (*TAIR) AT1G11360.4 (e_value=2e-78) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc10g006760.2.1 (e_value=2e-98) genomic_reference:SL2.40ch10 gene_region:1212643-1214025 transcript_region:SL2.40ch10:1212643..1214025- go_terms:GO:0006950 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00029858g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-18) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00029858g0013.1 protein AED:0.62 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|93 NbS00058017g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|1|1|4|0|268; (*GB) gi|76786474|gb|ABA54988.1| (e_value=6e-119) xyloglucan endotransglycosylase hydrolase [Apium graveolens];; (*SWP) sp|Q8LC45|XTH33_ARATH (e_value=8e-92) Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2;; (*TAIR) AT1G10550.1 (e_value=6e-93) | Symbols: XTH33, XET | xyloglucan:xyloglucosyl transferase 33 | chr1:3479257-3480957 REVERSE LENGTH=310;; (*ITAG) Solyc05g005680.2.1 (e_value=3e-159) genomic_reference:SL2.40ch05 gene_region:506438-508385 transcript_region:SL2.40ch05:506438..508385+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** D5HP44_9ROSA); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00054026g0001.1 protein AED:0.42 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|200; (*ITAG) Solyc11g065520.1.1 (e_value=1e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00005617g0005.1 protein AED:0.34 eAED:0.34 QI:612|1|1|1|0.5|0.33|3|0|349; (*GB) gi|224107277|ref|XP_002314431.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJ53|P2C35_ARATH (e_value=0.0) Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1;; (*TAIR) AT3G06270.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:1896763-1897887 FORWARD LENGTH=348;; (*ITAG) Solyc01g080400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72157816-72163270 transcript_region:SL2.40ch01:72157816..72163270+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00044379g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|347953950|gb|AEP33595.1| (e_value=0.0) CBL-interacting protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|O65554|CIPK6_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1;; (*TAIR) AT4G30960.1 (e_value=0.0) | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441;; (*ITAG) Solyc12g010130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3267183-3268481 transcript_region:SL2.40ch12:3267183..3268481+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 7 (AHRD V1 ***- A0MNJ4_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00044379g0011.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=2e-72) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc02g027080.1.1 (e_value=1e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00044379g0010.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|147; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=9e-32) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc12g009460.1.1 (e_value=7e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00044379g0009.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|4|0|665; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=0.0) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-70) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-36) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc02g027080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00022163g0002.1 protein AED:0.12 eAED:0.12 QI:63|1|0.5|1|0|0.5|2|0|803; (*GB) gi|147772268|emb|CAN67351.1| (e_value=0.0) hypothetical protein VITISV_018091 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc07g047690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56247177-56249543 transcript_region:SL2.40ch07:56247177..56249543+ go_terms:GO:0006457,GO:0031072 functional_description:"Curved DNA-binding protein (AHRD V1 *--- CBPA_SALCH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00034839g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|438; (*GB) gi|359473966|ref|XP_002272937.2| (e_value=5e-75) PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Vitis vinifera];; (*SWP) sp|O82486|MTA70_ARATH (e_value=4e-59) N6-adenosine-methyltransferase MT-A70-like OS=Arabidopsis thaliana GN=EMB1706 PE=1 SV=2;; (*TAIR) AT4G10760.1 (e_value=3e-60) | Symbols: EMB1706, MTA | mRNAadenosine methylase | chr4:6619947-6623312 REVERSE LENGTH=685;; (*ITAG) Solyc08g066730.2.1 (e_value=3e-129) genomic_reference:SL2.40ch08 gene_region:52759024-52767013 transcript_region:SL2.40ch08:52759024..52767013+ go_terms:GO:0005515,GO:0016422 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0005515,GO:0016422 NbS00016768g0011.1 protein AED:0.31 eAED:0.31 QI:0|1|0.87|1|1|1|8|0|397; (*GB) gi|2493810|sp|Q42946.1|HEM6_TOBAC (e_value=0.0) RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor;; (*SWP) sp|Q42946|HEM6_TOBAC (e_value=0.0) Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1;; (*TAIR) AT1G03475.1 (e_value=0.0) | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen III oxidase | chr1:869302-871175 REVERSE LENGTH=386;; (*ITAG) Solyc10g005110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:96242-103626 transcript_region:SL2.40ch10:96242..103626- go_terms:GO:0042803 functional_description:"Coproporphyrinogen III oxidase aerobic (AHRD V1 ***- A9DTF4_9FLAO); contains Interpro domain(s) IPR001260 Coproporphyrinogen III oxidase "; GO:0042803 NbS00016768g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|554; (*GB) gi|128592|sp|P29162.1|ASOL_TOBAC (e_value=0.0) RecName: Full=L-ascorbate oxidase homolog; AltName: Full=Pollen-specific protein NTP303; Flags: Precursor;; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=0.0) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc01g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:46194291-46196312 transcript_region:SL2.40ch01:46194291..46196312+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0055114 NbS00016768g0012.1 protein AED:0.23 eAED:0.23 QI:60|0.5|0.33|0.66|0|0|3|0|58; (*GB) gi|27529830|dbj|BAC53930.1| (e_value=5e-25) amidase-like protein [Nicotiana tabacum];; (*TAIR) AT5G07360.1 (e_value=1e-16) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659;; (*ITAG) Solyc06g068690.2.1 (e_value=3e-25) genomic_reference:SL2.40ch06 gene_region:38974327-38979215 transcript_region:SL2.40ch06:38974327..38979215+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A3HSJ3_9BACT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00005095g0002.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|193290702|gb|ACF17659.1| (e_value=1e-111) putative 3-isopropylmalate dehydrogenase small subunit [Capsicum annuum];; (*SWP) sp|B5YHE5|LEUD_THEYD (e_value=1e-16) 3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuD PE=3 SV=1;; (*TAIR) AT2G43090.1 (e_value=5e-82) | Symbols: | Aconitase/3-isopropylmalate dehydratase protein | chr2:17918957-17919712 FORWARD LENGTH=251;; (*ITAG) Solyc06g060790.1.1 (e_value=9e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35203918-35204688 transcript_region:SL2.40ch06:35203918..35204688- go_terms:GO:0016836 functional_description:"3-isopropylmalate dehydratase small subunit (AHRD V1 ***- Q9ZW85_ARATH); contains Interpro domain(s) IPR011827 3-isopropylmalate dehydratase, small subunit, subgroup "; GO:0016836 NbS00020038g0002.1 protein AED:0.15 eAED:0.15 QI:219|1|1|1|0.83|0.71|7|527|404; (*GB) gi|255573503|ref|XP_002527677.1| (e_value=0.0) arf gtpase-activating protein, putative [Ricinus communis];; (*SWP) sp|Q9FIQ0|AGD9_ARATH (e_value=2e-160) Probable ADP-ribosylation factor GTPase-activating protein AGD9 OS=Arabidopsis thaliana GN=AGD9 PE=1 SV=1;; (*TAIR) AT5G46750.1 (e_value=2e-161) | Symbols: AGD9 | ARF-GAP domain 9 | chr5:18969950-18971817 REVERSE LENGTH=402;; (*ITAG) Solyc08g076920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58003389-58009953 transcript_region:SL2.40ch08:58003389..58009953- go_terms:GO:0008060,GO:0003677 functional_description:"ADP-ribosylation factor GTPase-activating protein 3 (AHRD V1 **** B6TII3_MAIZE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0008060,GO:0003677 NbS00032255g0002.1 protein AED:0.19 eAED:0.21 QI:280|0.33|0.5|1|1|1|4|338|334; (*GB) gi|224139742|ref|XP_002323255.1| (e_value=6e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|P94111|STS1_ARATH (e_value=1e-52) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=2e-140) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=2e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00001004g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|0.66|0.5|0.66|3|0|197; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=4e-55) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*TAIR) AT5G05680.1 (e_value=6e-41) | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810;; (*ITAG) Solyc11g008130.1.1 (e_value=8e-89) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2328246-2330208 transcript_region:SL2.40ch11:2328246..2330208+ functional_description:"Nuclear pore complex protein-related protein (Fragment) (AHRD V1 ***- Q45NJ5_MEDSA)"; NbS00001004g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|310; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=1e-147) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*TAIR) AT5G05680.1 (e_value=6e-109) | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810;; (*ITAG) Solyc11g008120.1.1 (e_value=7e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2318739-2326782 transcript_region:SL2.40ch11:2318739..2326782+ functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 ***- Q9FFK6_ARATH)"; NbS00045430g0005.1 protein AED:0.14 eAED:0.18 QI:0|0.66|0.42|1|0.5|0.71|7|0|516; (*GB) gi|255556131|ref|XP_002519100.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-99) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=5e-143) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc01g109320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88057676-88060117 transcript_region:SL2.40ch01:88057676..88060117- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbC25434411g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|136; (*GB) gi|2114050|dbj|BAA20076.1| (e_value=4e-93) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=3e-93) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.2 (e_value=2e-83) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186569-187531 REVERSE LENGTH=219;; (*ITAG) Solyc08g081190.2.1 (e_value=2e-94) genomic_reference:SL2.40ch08 gene_region:61427665-61431015 transcript_region:SL2.40ch08:61427665..61431015+ go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- O24662_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00024407g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|405; (*GB) gi|255581601|ref|XP_002531605.1| (e_value=3e-155) dopamine beta-monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=2e-23) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=7e-147) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc11g012420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5262685-5264885 transcript_region:SL2.40ch11:5262685..5264885- functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00024407g0010.1 protein AED:0.17 eAED:0.17 QI:87|0.8|0.81|1|0.9|0.81|11|470|305; (*GB) gi|350539998|ref|NP_001233837.1| (e_value=7e-151) inositol monophosphatase 3 [Solanum lycopersicum];; (*SWP) sp|P54928|IMP3_SOLLC (e_value=2e-152) Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1;; (*TAIR) AT3G02870.1 (e_value=2e-111) | Symbols: VTC4 | Inositol monophosphatase family protein | chr3:627742-629682 REVERSE LENGTH=271;; (*ITAG) Solyc11g012410.1.1 (e_value=1e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5242451-5246401 transcript_region:SL2.40ch11:5242451..5246401+ go_terms:GO:0004437 functional_description:"Inositol monophosphatase 3 (AHRD V1 ***- B6TEX0_MAIZE); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0004437 NbS00024407g0011.1 protein AED:0.23 eAED:0.24 QI:328|0.91|0.92|1|0.66|0.61|13|273|367; (*GB) gi|225469268|ref|XP_002267661.1| (e_value=0.0) PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=0.0) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=0.0) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc11g012400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5232807-5238814 transcript_region:SL2.40ch11:5232807..5238814+ go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00002347g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0|1|0|0|4|0|176; (*GB) gi|296081696|emb|CBI20701.3| (e_value=7e-69) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G12070.1 (e_value=7e-22) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7231941-7234272 FORWARD LENGTH=483;; (*ITAG) Solyc08g062200.1.1 (e_value=6e-96) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:47906928-47910556 transcript_region:SL2.40ch08:47906928..47910556+ functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00002347g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|343887305|dbj|BAK61851.1| (e_value=6e-32) hypothetical protein [Citrus unshiu];; (*ITAG) Solyc08g062200.1.1 (e_value=5e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:47906928-47910556 transcript_region:SL2.40ch08:47906928..47910556+ functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00002347g0006.1 protein AED:0.59 eAED:0.59 QI:0|0.2|0.16|0.5|0.4|0.33|6|0|296; (*GB) gi|343887306|dbj|BAK61852.1| (e_value=2e-28) hypothetical protein [Citrus unshiu];; (*ITAG) Solyc08g062200.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:47906928-47910556 transcript_region:SL2.40ch08:47906928..47910556+ functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00036182g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=2e-37) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=7e-39) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=1e-35) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc11g008510.1.1 (e_value=2e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2684326-2686166 transcript_region:SL2.40ch11:2684326..2686166+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0005840 NbS00004756g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.5|1|1|4|0|257; (*GB) gi|225444682|ref|XP_002277684.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100257848 [Vitis vinifera];; (*TAIR) AT1G72490.1 (e_value=4e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc07g042100.2.1 (e_value=9e-100) genomic_reference:SL2.40ch07 gene_region:52404554-52405939 transcript_region:SL2.40ch07:52404554..52405939+ functional_description:"F1L3.5 (AHRD V1 ***- Q9LNR9_ARATH)"; NbS00000470g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|1031; (*GB) gi|359494657|ref|XP_002264130.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT1G16480.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5625843-5628656 REVERSE LENGTH=937;; (*ITAG) Solyc01g081560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73258597-73261734 transcript_region:SL2.40ch01:73258597..73261734+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000470g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|18|92; (*GB) gi|351725739|ref|NP_001236847.1| (e_value=9e-21) uncharacterized protein LOC100306055 [Glycine max];; (*SWP) sp|A0AT29|NLTP2_LENCU (e_value=2e-18) Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1;; (*TAIR) AT2G18370.1 (e_value=2e-18) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:7980687-7981475 FORWARD LENGTH=116;; (*ITAG) Solyc01g081600.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:73302645-73303958 transcript_region:SL2.40ch01:73302645..73303958- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6E0V1_NICGL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00000470g0015.1 protein AED:0.16 eAED:0.18 QI:0|1|0.5|1|1|1|2|327|571; (*GB) gi|350540008|ref|NP_001234608.1| (e_value=0.0) beta-hexosaminidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|P43077|HEX1_CANAX (e_value=7e-89) Beta-hexosaminidase OS=Candida albicans GN=HEX1 PE=1 SV=1;; (*TAIR) AT1G05590.1 (e_value=0.0) | Symbols: HEXO2, ATHEX3 | beta-hexosaminidase 2 | chr1:1669871-1671686 FORWARD LENGTH=580;; (*ITAG) Solyc01g081610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73313897-73316705 transcript_region:SL2.40ch01:73313897..73316705- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase 1 (AHRD V1 **** D3TI69_SOLLC); contains Interpro domain(s) IPR015883 Glycoside hydrolase, family 20, catalytic core "; GO:0016231 NbS00000470g0004.1 protein AED:0.22 eAED:0.22 QI:257|0.85|0.83|1|0.97|0.97|36|285|1456; (*GB) gi|116047945|gb|ABJ53198.1| (e_value=0.0) myosin XI-F [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=5e-163) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT2G31900.1 (e_value=0.0) | Symbols: XIF, ATXIF, ATMYO5 | myosin-like protein XIF | chr2:13560760-13569623 REVERSE LENGTH=1556;; (*ITAG) Solyc01g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73239713-73251780 transcript_region:SL2.40ch01:73239713..73251780- go_terms:GO:0060001 functional_description:"Myosin XI-F (AHRD V1 ***- B0CN60_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00038642g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.88|0.7|1|0.88|0.9|10|0|442; (*GB) gi|359491092|ref|XP_002283895.2| (e_value=2e-131) PREDICTED: F-box/LRR-repeat protein At5g63520-like [Vitis vinifera];; (*SWP) sp|Q9FMV0|FBL91_ARATH (e_value=7e-79) F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1;; (*TAIR) AT5G63520.1 (e_value=6e-80) | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426300-25429093 REVERSE LENGTH=519;; (*ITAG) Solyc04g016130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6856294-6869390 transcript_region:SL2.40ch04:6856294..6869390- functional_description:"F-box/LRR-repeat protein At5g63520 (AHRD V1 ***- D7MPP7_ARALY); contains Interpro domain(s) IPR019494 FIST C domain "; NbS00038642g0008.1 protein AED:0.72 eAED:1.00 QI:0|0|0|0.5|1|0|2|0|110 NbS00038642g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.72|0.57|0.94|0.83|0.78|19|36|1133; (*GB) gi|359481805|ref|XP_002278603.2| (e_value=0.0) PREDICTED: kinesin-4-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT3G10310.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr3:3190208-3195005 FORWARD LENGTH=922;; (*ITAG) Solyc04g016080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6781720-6791327 transcript_region:SL2.40ch04:6781720..6791327+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00009200g0013.1 protein AED:0.15 eAED:0.15 QI:233|0.85|0.86|1|0.71|0.8|15|216|503; (*GB) gi|225461701|ref|XP_002283201.1| (e_value=0.0) PREDICTED: anaphase-promoting complex subunit 6 [Vitis vinifera];; (*SWP) sp|B3DNN5|CDC16_ARATH (e_value=0.0) Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1;; (*TAIR) AT1G78770.1 (e_value=0.0) | Symbols: APC6 | anaphase promoting complex 6 | chr1:29617421-29621273 FORWARD LENGTH=543;; (*ITAG) Solyc12g014320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5135180-5145918 transcript_region:SL2.40ch12:5135180..5145918- go_terms:GO:0005488 functional_description:"Anaphase promoting complex subunit 6/cell division cycle protein (IC) (AHRD V1 **-- Q5SCA1_OSTTA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009200g0010.1 protein AED:0.22 eAED:0.22 QI:68|0.66|0.75|1|1|1|4|274|225; (*GB) gi|224117016|ref|XP_002317453.1| (e_value=6e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|P16273|PRPX_HORVU (e_value=4e-52) Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2;; (*TAIR) AT1G78780.4 (e_value=1e-102) | Symbols: | pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=235;; (*ITAG) Solyc12g014310.1.1 (e_value=1e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5129574-5133435 transcript_region:SL2.40ch12:5129574..5133435- functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbS00008895g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|0|2|0|117; (*GB) gi|225440394|ref|XP_002270859.1| (e_value=1e-30) PREDICTED: probable WRKY transcription factor 49 [Vitis vinifera];; (*SWP) sp|Q9FHR7|WRK49_ARATH (e_value=3e-20) Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1;; (*TAIR) AT5G43290.1 (e_value=2e-21) | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding protein 49 | chr5:17371987-17373083 REVERSE LENGTH=274;; (*ITAG) Solyc09g010960.2.1 (e_value=9e-59) genomic_reference:SL2.40ch09 gene_region:4315614-4317328 transcript_region:SL2.40ch09:4315614..4317328- go_terms:GO:0045449 functional_description:"WRKY transcription factor 17 (AHRD V1 *-*- Q7E0X2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00019242g0005.1 protein AED:0.30 eAED:0.30 QI:225|1|1|1|1|1|3|344|372; (*GB) gi|225441250|ref|XP_002273764.1| (e_value=0.0) PREDICTED: strictosidine synthase 1 [Vitis vinifera];; (*SWP) sp|P94111|STS1_ARATH (e_value=2e-69) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=0.0) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00019242g0003.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.33|1|1|3|0|96 NbS00029425g0002.1 protein AED:0.11 eAED:0.14 QI:0|1|0.66|1|0.5|0.66|3|139|324; (*GB) gi|255550303|ref|XP_002516202.1| (e_value=1e-90) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q4KLT0|RN217_XENLA (e_value=5e-18) Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1;; (*TAIR) AT3G53690.1 (e_value=8e-80) | Symbols: | RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320;; (*ITAG) Solyc03g005970.2.1 (e_value=2e-135) genomic_reference:SL2.40ch03 gene_region:656202-658609 transcript_region:SL2.40ch03:656202..658609- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00040303g0001.1 protein AED:0.37 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-18) hypothetical protein [Nicotiana tabacum]; NbS00040303g0003.1 protein AED:0.91 eAED:1.00 QI:0|0|0|0.33|0.5|0.33|3|0|84 NbS00057454g0004.1 protein AED:0.33 eAED:0.33 QI:74|1|0.8|1|0.75|0.8|5|390|147; (*GB) gi|255587979|ref|XP_002534461.1| (e_value=2e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G28025.2 (e_value=1e-40) | Symbols: | unknown protein. | chr4:13935836-13937367 REVERSE LENGTH=148;; (*ITAG) Solyc07g006490.2.1 (e_value=3e-80) genomic_reference:SL2.40ch07 gene_region:1266903-1270514 transcript_region:SL2.40ch07:1266903..1270514+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056499g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.71|0.37|0.87|0.57|0.62|8|0|470; (*GB) gi|359477163|ref|XP_002271327.2| (e_value=9e-146) PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera];; (*TAIR) AT5G11240.1 (e_value=2e-125) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615;; (*ITAG) Solyc02g030080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00020081g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|548746|sp|P36688.1|RK12_NICSY (e_value=9e-93) RecName: Full=50S ribosomal protein L12, chloroplastic; AltName: Full=CL12; Flags: Precursor;; (*SWP) sp|P36688|RK12_NICSY (e_value=3e-94) 50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G27830.1 (e_value=3e-58) | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A | chr3:10318576-10319151 FORWARD LENGTH=191;; (*ITAG) Solyc02g086730.1.1 (e_value=4e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43937531-43938103 transcript_region:SL2.40ch02:43937531..43938103+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-C (AHRD V1 ***- Q8LBJ7_ARATH); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00036932g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|56694219|gb|AAW22881.1| (e_value=4e-34) putative EARLY flowering 4 protein [Solanum lycopersicum];; (*SWP) sp|O04211|ELF4_ARATH (e_value=9e-30) Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1;; (*TAIR) AT2G40080.1 (e_value=7e-31) | Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111;; (*ITAG) Solyc06g051680.1.1 (e_value=1e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:31701425-31701796 transcript_region:SL2.40ch06:31701425..31701796- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00036932g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|218 NbS00017490g0109.1 protein AED:0.55 eAED:0.86 QI:0|0|0.2|0.6|0|0.2|5|0|88 NbS00017490g0102.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|654 NbS00017490g0111.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|0.66|0.5|0.66|3|205|70 NbS00017490g0110.1 protein AED:0.10 eAED:0.12 QI:0|0.25|0.11|1|0.75|0.77|9|638|1813 NbS00017490g0115.1 protein AED:0.14 eAED:0.15 QI:8|1|0.66|1|1|1|3|200|142 NbS00009158g0013.1 protein AED:0.13 eAED:0.13 QI:147|1|1|1|1|1|4|340|162; (*GB) gi|255559611|ref|XP_002520825.1| (e_value=3e-45) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G40435.1 (e_value=6e-38) | Symbols: | BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158;; (*ITAG) Solyc06g050840.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:30164049-30165645 transcript_region:SL2.40ch06:30164049..30165645+ go_terms:GO:0030528 functional_description:"DNA binding protein (AHRD V1 ***- B4FLH1_MAIZE)"; GO:0030528 NbS00009158g0012.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|1|0.75|4|0|158; (*GB) gi|359486357|ref|XP_002274126.2| (e_value=3e-81) PREDICTED: uncharacterized protein LOC100243287 [Vitis vinifera];; (*TAIR) AT3G56210.4 (e_value=8e-74) | Symbols: | ARM repeat superfamily protein | chr3:20853995-20855445 REVERSE LENGTH=191;; (*ITAG) Solyc02g076790.2.1 (e_value=8e-102) genomic_reference:SL2.40ch02 gene_region:36481841-36485328 transcript_region:SL2.40ch02:36481841..36485328- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7LVD5_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00050387g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0.5|1|1|1|2|246|399; (*GB) gi|225426623|ref|XP_002280836.1| (e_value=5e-152) PREDICTED: 2-keto-3-deoxy-L-rhamnonate aldolase-like [Vitis vinifera];; (*SWP) sp|B1LLJ9|RHMA_ECOSM (e_value=1e-43) 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rhmA PE=3 SV=1;; (*TAIR) AT4G10750.1 (e_value=7e-144) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr4:6618724-6619800 FORWARD LENGTH=358;; (*ITAG) Solyc08g008530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:2926171-2927226 transcript_region:SL2.40ch08:2926171..2927226- go_terms:GO:0006725,GO:0003824 functional_description:"Aldolase (AHRD V1 ***- D7JQJ4_ECOLX); contains Interpro domain(s) IPR005000 HpcH/HpaI aldolase "; GO:0006725,GO:0003824 NbS00050387g0006.1 protein AED:0.10 eAED:0.10 QI:268|1|1|1|1|1|4|481|463; (*GB) gi|58200405|gb|AAW66458.1| (e_value=0.0) Fas-associated factor 1-like protein [Capsicum annuum];; (*SWP) sp|Q6GQ69|FAF2B_XENLA (e_value=1e-37) FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=6e-167) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc08g008510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2908419-2918363 transcript_region:SL2.40ch08:2908419..2918363+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 **-- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbS00017866g0008.1 protein AED:0.21 eAED:0.25 QI:0|0.16|0.57|1|0.33|0.42|7|36|254; (*GB) gi|255573238|ref|XP_002527548.1| (e_value=5e-48) Anthranilate synthase component II, putative [Ricinus communis];; (*SWP) sp|Q08654|TRPG_THEMA (e_value=8e-22) Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2;; (*TAIR) AT1G25220.1 (e_value=8e-47) | Symbols: ASB1, TRP4, WEI7 | anthranilate synthase beta subunit 1 | chr1:8837430-8839478 REVERSE LENGTH=276;; (*ITAG) Solyc12g010180.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3296799-3307363 transcript_region:SL2.40ch12:3296799..3307363- go_terms:GO:0008152,GO:0006541,GO:0009058,GO:0003824 functional_description:"Anthranilate synthase (AHRD V1 ***- A1KAT4_AZOSB); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0008152,GO:0006541,GO:0009058,GO:0003824 NbS00017866g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.8|1|0.5|0.4|5|769|390; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5Z8P0|P2C60_ORYSJ (e_value=0.0) Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1;; (*TAIR) AT3G51370.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:19070054-19071975 FORWARD LENGTH=379;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00026038g0003.1 protein AED:0.01 eAED:0.01 QI:280|1|1|1|0.5|0.8|5|354|373; (*GB) gi|225439489|ref|XP_002268055.1| (e_value=6e-67) PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=3e-26) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=1e-45) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc06g051060.2.1 (e_value=6e-111) genomic_reference:SL2.40ch06 gene_region:30657220-30658891 transcript_region:SL2.40ch06:30657220..30658891+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6ER41_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00027742g0012.1 protein AED:0.26 eAED:0.26 QI:214|1|1|1|0.85|1|8|231|203; (*GB) gi|1616614|emb|CAA69701.1| (e_value=8e-150) small GTP-binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|Q05737|YPTM2_MAIZE (e_value=8e-143) GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1;; (*TAIR) AT1G02130.1 (e_value=1e-140) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc08g078070.2.1 (e_value=1e-153) genomic_reference:SL2.40ch08 gene_region:59084544-59087746 transcript_region:SL2.40ch08:59084544..59087746+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00027742g0013.1 protein AED:0.00 eAED:0.01 QI:0|1|1|1|1|1|7|309|363; (*GB) gi|77416977|gb|ABA81884.1| (e_value=4e-80) nuclear RNA binding protein-like [Solanum tuberosum];; (*TAIR) AT5G47210.1 (e_value=2e-34) | Symbols: | Hyaluronan / mRNA binding family | chr5:19169222-19171012 REVERSE LENGTH=357;; (*ITAG) Solyc08g007220.2.1 (e_value=5e-63) genomic_reference:SL2.40ch08 gene_region:1786907-1790103 transcript_region:SL2.40ch08:1786907..1790103- go_terms:GO:0003723 functional_description:"Nuclear RNA binding protein (Fragment) (AHRD V1 **** Q9SQ56_TOBAC); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; GO:0003723 NbS00027742g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|526; (*GB) gi|359497567|ref|XP_002265980.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like, partial [Vitis vinifera];; (*SWP) sp|Q9M4P3|PP316_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3;; (*TAIR) AT4G16835.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=656;; (*ITAG) Solyc08g078080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59087958-59090059 transcript_region:SL2.40ch08:59087958..59090059- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00027742g0016.1 protein AED:0.05 eAED:0.08 QI:0|0|0|1|0|0|3|0|535; (*GB) gi|269996964|gb|ACZ57767.1| (e_value=0.0) glycerolipase A1 [Nicotiana attenuata];; (*SWP) sp|O23522|PLA14_ARATH (e_value=0.0) Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2;; (*TAIR) AT4G16820.1 (e_value=0.0) | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily protein | chr4:9467563-9469116 FORWARD LENGTH=517;; (*ITAG) Solyc08g078090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59094386-59096044 transcript_region:SL2.40ch08:59094386..59096044- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00024654g0004.1 protein AED:0.05 eAED:0.05 QI:73|1|1|1|0.83|0.71|7|0|447; (*GB) gi|297738630|emb|CBI27875.3| (e_value=4e-131) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=1e-46) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G57035.1 (e_value=1e-100) | Symbols: | U-box domain-containing protein kinase family protein | chr5:23080743-23083819 FORWARD LENGTH=789;; (*ITAG) Solyc12g008990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00049803g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.8|1|0.66|0.8|10|226|396; (*GB) gi|237688244|gb|ACR15118.1| (e_value=0.0) choline monooxygenase [Lycium barbarum];; (*SWP) sp|Q9SZR0|CHMO_ARATH (e_value=2e-159) Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2;; (*TAIR) AT4G29890.1 (e_value=2e-160) | Symbols: | choline monooxygenase, putative (CMO-like) | chr4:14608868-14610905 FORWARD LENGTH=422;; (*ITAG) Solyc07g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3074619-3078496 transcript_region:SL2.40ch07:3074619..3078496+ go_terms:GO:0055114 functional_description:"Rieske (2Fe-2S) domain protein (AHRD V1 **-- Q024N8_SOLUE); contains Interpro domain(s) IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit "; GO:0055114 NbS00049803g0008.1 protein AED:0.27 eAED:0.27 QI:163|0.90|0.90|1|0.90|0.93|33|0|1034; (*GB) gi|350539882|ref|NP_001234817.1| (e_value=0.0) auto-inhibited Ca2 -transporting ATPase 10 [Solanum lycopersicum];; (*SWP) sp|Q9LF79|ACA8_ARATH (e_value=0.0) Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1;; (*TAIR) AT5G57110.2 (e_value=0.0) | Symbols: ACA8, AT-ACA8 | autoinhibited Ca2+ -ATPase, isoform 8 | chr5:23109729-23116857 REVERSE LENGTH=1074;; (*ITAG) Solyc07g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00010431g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|356495715|ref|XP_003516719.1| (e_value=7e-24) PREDICTED: ethylene-responsive transcription factor ERF061-like [Glycine max];; (*SWP) sp|Q9C7W2|ERF61_ARATH (e_value=1e-22) Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1;; (*TAIR) AT1G64380.1 (e_value=1e-23) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:23890981-23891988 REVERSE LENGTH=335;; (*ITAG) Solyc08g082210.2.1 (e_value=7e-25) genomic_reference:SL2.40ch08 gene_region:62221339-62222646 transcript_region:SL2.40ch08:62221339..62222646- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00031456g0005.1 protein AED:0.05 eAED:0.05 QI:144|1|1|1|1|1|4|346|280; (*GB) gi|224128027|ref|XP_002329236.1| (e_value=1e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2V0W1|PPD_RAPSA (e_value=6e-74) Pheophorbidase OS=Raphanus sativus GN=PPD PE=1 SV=1;; (*TAIR) AT3G10870.1 (e_value=4e-117) | Symbols: MES17, ATMES17 | methyl esterase 17 | chr3:3401228-3402612 REVERSE LENGTH=276;; (*ITAG) Solyc06g048570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27750020-27752571 transcript_region:SL2.40ch06:27750020..27752571- go_terms:GO:0080030,GO:0080032 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-- Q2QYJ1_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080030,GO:0080032 NbS00031456g0008.1 protein AED:0.21 eAED:0.22 QI:0|0.8|0.66|1|0.6|0.83|6|273|309; (*GB) gi|225464033|ref|XP_002267203.1| (e_value=3e-153) PREDICTED: ABC transporter I family member 6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAF5|AB6I_ARATH (e_value=2e-140) ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1;; (*TAIR) AT3G10670.1 (e_value=1e-141) | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein 7 | chr3:3335325-3337304 REVERSE LENGTH=338;; (*ITAG) Solyc06g048540.2.1 (e_value=9e-171) genomic_reference:SL2.40ch06 gene_region:27702205-27706442 transcript_region:SL2.40ch06:27702205..27706442- go_terms:GO:0015623 functional_description:"FeS assembly ATPase SufC (AHRD V1 **** B5W7S4_SPIMA); contains Interpro domain(s) IPR010230 ATPase SufC, SUF system FeS cluster assembly "; GO:0015623 NbS00018179g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|0|0|2|215|139; (*GB) gi|88193119|gb|ABD42934.1| (e_value=8e-52) ribosomal protein S14 [Juncus effusus];; (*SWP) sp|P14875|RT14_OENBE (e_value=2e-51) Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=1e-49) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=1e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00018179g0012.1 protein AED:0.19 eAED:0.20 QI:0|0.75|0.64|1|0.75|0.76|17|0|927; (*GB) gi|225458503|ref|XP_002282254.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247210 [Vitis vinifera];; (*SWP) sp|Q95K09|GCP5_MACFA (e_value=1e-30) Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis GN=TUBGCP5 PE=2 SV=2;; (*TAIR) AT1G80260.1 (e_value=0.0) | Symbols: emb1427 | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995;; (*ITAG) Solyc04g079390.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61494902-61503186 transcript_region:SL2.40ch04:61494902..61503186- go_terms:GO:0015631 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 **** Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0015631 NbS00018179g0013.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0|3|0|404; (*GB) gi|9937311|gb|AAG02411.1|AF284038_1 (e_value=8e-84) phloem serpin-1 [Cucurbita maxima];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=4e-77) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=3e-78) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079370.2.1 (e_value=2e-155) genomic_reference:SL2.40ch04 gene_region:61487601-61489480 transcript_region:SL2.40ch04:61487601..61489480+ go_terms:GO:0002020 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0002020 NbS00015047g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0.83|1|0.8|0.66|6|560|432; (*GB) gi|84778268|dbj|BAE73187.1| (e_value=4e-107) KANADI-like transcription factor FEATHERED [Ipomoea nil];; (*SWP) sp|Q93WJ9|KAN1_ARATH (e_value=1e-61) Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1;; (*TAIR) AT5G16560.1 (e_value=9e-63) | Symbols: KAN, KAN1 | Homeodomain-like superfamily protein | chr5:5407365-5411092 REVERSE LENGTH=403;; (*ITAG) Solyc11g011770.1.1 (e_value=1e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4746134-4752006 transcript_region:SL2.40ch11:4746134..4752006- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q84NK2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00000674g0014.1 protein AED:0.33 eAED:0.33 QI:18|0.8|0.83|1|0.4|0.16|6|338|207; (*GB) gi|82621188|gb|ABB86282.1| (e_value=3e-83) ubiquitin-conjugating protein-like [Solanum tuberosum];; (*SWP) sp|Q9FI61|UBC27_ARATH (e_value=6e-68) Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1;; (*TAIR) AT5G50870.1 (e_value=5e-69) | Symbols: UBC27 | ubiquitin-conjugating enzyme 27 | chr5:20699626-20700998 REVERSE LENGTH=192;; (*ITAG) Solyc06g072570.2.1 (e_value=1e-84) genomic_reference:SL2.40ch06 gene_region:41145493-41149587 transcript_region:SL2.40ch06:41145493..41149587+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 1 (AHRD V1 **** UBC1_SCHPO); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00000674g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|164; (*ITAG) Solyc06g072590.2.1 (e_value=3e-40) genomic_reference:SL2.40ch06 gene_region:41159647-41161330 transcript_region:SL2.40ch06:41159647..41161330- functional_description:"Unknown Protein (AHRD V1)"; NbS00000674g0015.1 protein AED:0.27 eAED:0.27 QI:246|0.85|0.8|1|0.64|0.6|15|417|332; (*GB) gi|255543140|ref|XP_002512633.1| (e_value=0.0) pyruvate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q38799|ODPB_ARATH (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2;; (*TAIR) AT5G50850.1 (e_value=0.0) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc06g072580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41150708-41158205 transcript_region:SL2.40ch06:41150708..41158205- go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00024854g0011.1 protein AED:0.24 eAED:0.24 QI:1011|0.58|0.46|1|0.75|0.76|13|1141|487; (*GB) gi|359478708|ref|XP_002282476.2| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera];; (*SWP) sp|Q9M658|MOM1_ARATH (e_value=6e-37) Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1;; (*TAIR) AT1G08060.2 (e_value=4e-38) | Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001;; (*ITAG) Solyc10g011940.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:4231636-4240028 transcript_region:SL2.40ch10:4231636..4240028- go_terms:GO:0005634,GO:0005524,GO:0008270 functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 ***- D5LXF2_SCHMD); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0005634,GO:0005524,GO:0008270 NbS00024854g0004.1 protein AED:0.22 eAED:0.22 QI:689|0.5|0.66|1|0|0|3|283|364; (*GB) gi|129594|sp|P25872.1|PAL1_TOBAC (e_value=0.0) RecName: Full=Phenylalanine ammonia-lyase;; (*SWP) sp|P25872|PAL1_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=0.0) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc09g007920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1435451-1440492 transcript_region:SL2.40ch09:1435451..1440492+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00031351g0004.1 protein AED:0.37 eAED:0.37 QI:109|1|0.75|1|0.66|0.75|4|0|158; (*GB) gi|295918069|gb|ADG60253.1| (e_value=8e-49) stigma/style cell cycle inhibitor [Nicotiana tabacum];; (*TAIR) AT1G79200.1 (e_value=3e-31) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29794404-29795711 FORWARD LENGTH=159;; (*ITAG) Solyc05g008750.2.1 (e_value=1e-44) genomic_reference:SL2.40ch05 gene_region:2988398-2991740 transcript_region:SL2.40ch05:2988398..2991740+ functional_description:"Splicing factor arginine/serine-rich 12 (AHRD V1 *--- B6T1Y2_MAIZE)"; NbS00027782g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|0.5|2|383|536; (*GB) gi|15233463|ref|NP_193185.1| (e_value=5e-33) SMAD/FHA domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|O23305|Y4449_ARATH (e_value=2e-34) FHA domain-containing protein At4g14490 OS=Arabidopsis thaliana GN=At4g14490 PE=1 SV=1;; (*TAIR) AT4G14490.1 (e_value=1e-35) | Symbols: | SMAD/FHA domain-containing protein | chr4:8332414-8333574 REVERSE LENGTH=386;; (*ITAG) Solyc08g078470.2.1 (e_value=5e-150) genomic_reference:SL2.40ch08 gene_region:59431282-59434544 transcript_region:SL2.40ch08:59431282..59434544- functional_description:"FHA domain containing protein expressed (AHRD V1 *-*- Q6ATJ5_ORYSJ); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00027782g0019.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.83|1|0.4|0.33|6|0|383; (*GB) gi|255579629|ref|XP_002530655.1| (e_value=6e-106) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17350.1 (e_value=6e-84) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr4:9701582-9703358 FORWARD LENGTH=405;; (*ITAG) Solyc08g078500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59444975-59448662 transcript_region:SL2.40ch08:59444975..59448662- go_terms:GO:0035091 functional_description:"Os02g0658033 protein (Fragment) (AHRD V1 *-*- C7IYY5_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00027782g0013.1 protein AED:0.09 eAED:0.24 QI:87|0|0|1|1|1|2|0|146; (*GB) gi|2058706|gb|AAB53329.1| (e_value=1e-68) Rb7 [Solanum lycopersicum];; (*SWP) sp|P24422|TIP2_TOBAC (e_value=5e-69) Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2;; (*TAIR) AT4G17340.1 (e_value=8e-65) | Symbols: TIP2;2, DELTA-TIP2 | tonoplast intrinsic protein 2;2 | chr4:9699318-9700250 FORWARD LENGTH=250;; (*ITAG) Solyc06g060760.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:35181267-35182590 transcript_region:SL2.40ch06:35181267..35182590+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q39956_HELAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00027782g0017.1 protein AED:0.14 eAED:0.14 QI:298|0.66|0.57|1|1|1|7|0|370; (*GB) gi|224071114|ref|XP_002303360.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P49307|MOCA_RHIML (e_value=3e-16) Rhizopine catabolism protein MocA OS=Rhizobium meliloti GN=mocA PE=3 SV=1;; (*TAIR) AT4G17370.1 (e_value=0.0) | Symbols: | Oxidoreductase family protein | chr4:9706188-9708142 FORWARD LENGTH=368;; (*ITAG) Solyc08g078460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59427782-59430565 transcript_region:SL2.40ch08:59427782..59430565+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Inositol 2-dehydrogenase like protein (AHRD V1 **-- O23580_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491,GO:0055114 NbS00027782g0016.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.25|0.5|1|1|4|10|143; (*GB) gi|359495984|ref|XP_003635126.1| (e_value=9e-72) PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera];; (*TAIR) AT5G47435.1 (e_value=3e-65) | Symbols: | formyltetrahydrofolate deformylase, putative | chr5:19241779-19243424 FORWARD LENGTH=323;; (*ITAG) Solyc08g078490.2.1 (e_value=8e-81) genomic_reference:SL2.40ch08 gene_region:59440532-59444281 transcript_region:SL2.40ch08:59440532..59444281+ go_terms:GO:0005515,GO:0008855 functional_description:"Formyltetrahydrofolate deformylase (AHRD V1 ***- B9GYC5_POPTR); contains Interpro domain(s) IPR002376 Formyl transferase, N-terminal "; GO:0005515,GO:0008855 NbS00027782g0010.1 protein AED:0.54 eAED:0.74 QI:0|0|0|0.66|1|1|3|0|91; (*ITAG) Solyc08g078480.2.1 (e_value=4e-17) genomic_reference:SL2.40ch08 gene_region:59435749-59437135 transcript_region:SL2.40ch08:59435749..59437135+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014976g0006.1 protein AED:0.09 eAED:0.09 QI:154|1|1|1|0.78|0.8|15|427|553; (*GB) gi|297743390|emb|CBI36257.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O48652|UVR3_ARATH (e_value=0.0) (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2;; (*TAIR) AT3G15620.1 (e_value=0.0) | Symbols: UVR3 | DNA photolyase family protein | chr3:5293475-5296548 REVERSE LENGTH=556;; (*ITAG) Solyc12g042910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43806145-43811395 transcript_region:SL2.40ch12:43806145..43811395- go_terms:GO:0006281 functional_description:"Cryptochrome-like protein 1 (AHRD V1 ***- Q5IFN1_OSTTA); contains Interpro domain(s) IPR005101 DNA photolyase, FAD-binding/Cryptochrome, C-terminal "; GO:0006281 NbS00014976g0007.1 protein AED:0.18 eAED:0.18 QI:178|0.83|0.71|1|0.66|0.42|7|233|159; (*GB) gi|82623399|gb|ABB87114.1| (e_value=2e-44) cytochrome c oxidase family protein-like [Solanum tuberosum];; (*SWP) sp|Q9SSB8|CX5B2_ARATH (e_value=2e-44) Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1;; (*TAIR) AT1G80230.1 (e_value=1e-45) | Symbols: | Rubredoxin-like superfamily protein | chr1:30169784-30170999 REVERSE LENGTH=171;; (*ITAG) Solyc12g042900.1.1 (e_value=2e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:43796989-43804922 transcript_region:SL2.40ch12:43796989..43804922- go_terms:GO:0005740 functional_description:"Cytochrome c oxidase subunit Vb (AHRD V1 ***- Q0KKQ8_PEA); contains Interpro domain(s) IPR002124 Cytochrome c oxidase, subunit Vb "; GO:0005740 NbS00014976g0108.1 protein AED:0.14 eAED:0.14 QI:285|0.88|0.9|1|0.66|0.6|10|366|382 NbS00014976g0102.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|119 NbS00014976g0105.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|304 NbS00022984g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.8|0.66|1|1|0.83|6|101|986; (*GB) gi|225426395|ref|XP_002269839.1| (e_value=0.0) PREDICTED: putative copper-transporting ATPase 3-like [Vitis vinifera];; (*SWP) sp|Q9SH30|HMA5_ARATH (e_value=0.0) Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2;; (*TAIR) AT1G63440.1 (e_value=0.0) | Symbols: HMA5 | heavy metal atpase 5 | chr1:23527655-23531109 FORWARD LENGTH=995;; (*ITAG) Solyc08g080870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61215919-61221369 transcript_region:SL2.40ch08:61215919..61221369+ go_terms:GO:0004008 functional_description:"Copper-exporting P-type ATPase A (AHRD V1 **** C2W6T5_BACCE); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00023757g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|1|1|3|0|486; (*GB) gi|225427242|ref|XP_002278544.1| (e_value=0.0) PREDICTED: protein ABCI7, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LQK7|AB7I_ARATH (e_value=0.0) Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1;; (*TAIR) AT1G32500.1 (e_value=0.0) | Symbols: ATNAP6, NAP6 | non-intrinsic ABC protein 6 | chr1:11750091-11751994 REVERSE LENGTH=475;; (*ITAG) Solyc08g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1582945-1588341 transcript_region:SL2.40ch08:1582945..1588341- go_terms:GO:0005515,GO:0005215 functional_description:"FeS assembly protein SufD (AHRD V1 ***- Q3MG34_ANAVT); contains Interpro domain(s) IPR011542 SUF system FeS cluster assembly, SufD "; GO:0005515,GO:0005215 NbS00023757g0002.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.2|1|1|1|5|0|979; (*GB) gi|225427238|ref|XP_002278429.1| (e_value=0.0) PREDICTED: protein phosphatase 2C 29-like [Vitis vinifera];; (*SWP) sp|O82302|P2C29_ARATH (e_value=2e-157) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=1e-158) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1576129-1582322 transcript_region:SL2.40ch08:1576129..1582322+ go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00004940g0017.1 protein AED:0.09 eAED:0.13 QI:723|0.75|0.8|1|0.25|0.4|5|196|42 NbS00004940g0016.1 protein AED:0.07 eAED:0.15 QI:0|0.83|0.71|1|1|1|7|393|281; (*GB) gi|255554128|ref|XP_002518104.1| (e_value=3e-130) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=4e-66) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G24120.1 (e_value=4e-114) | Symbols: | Homeodomain-like superfamily protein | chr3:8705925-8708148 REVERSE LENGTH=295;; (*ITAG) Solyc09g091880.2.1 (e_value=6e-164) genomic_reference:SL2.40ch09 gene_region:66442582-66446588 transcript_region:SL2.40ch09:66442582..66446588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00004940g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|99; (*GB) gi|76573299|gb|ABA46754.1| (e_value=6e-65) unknown [Solanum tuberosum];; (*SWP) sp|Q95RC0|NAA30_DROME (e_value=3e-27) N-alpha-acetyltransferase 30 OS=Drosophila melanogaster GN=CG11412 PE=2 SV=1;; (*TAIR) AT2G38130.2 (e_value=6e-54) | Symbols: ATMAK3 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:15978639-15980145 REVERSE LENGTH=190;; (*ITAG) Solyc09g091980.2.1 (e_value=6e-67) genomic_reference:SL2.40ch09 gene_region:66517949-66522458 transcript_region:SL2.40ch09:66517949..66522458- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 30, NatC catalytic subunit (AHRD V1 **** NAA30_DROME); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00004940g0010.1 protein AED:0.27 eAED:0.40 QI:0|0|0|1|0.5|0.66|3|0|636; (*GB) gi|255554124|ref|XP_002518102.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O48837|LRKS2_ARATH (e_value=2e-151) Receptor like protein kinase S.2 OS=Arabidopsis thaliana GN=LECRKS2 PE=2 SV=2;; (*TAIR) AT2G32800.1 (e_value=1e-152) | Symbols: AP4.3A | protein kinase family protein | chr2:13916478-13919033 FORWARD LENGTH=851;; (*ITAG) Solyc09g091990.2.1 (e_value=1e-94) genomic_reference:SL2.40ch09 gene_region:66532632-66534277 transcript_region:SL2.40ch09:66532632..66534277+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00033035g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|944; (*GB) gi|7672732|gb|AAF66615.1| (e_value=0.0) LRR receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc01g108840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87756900-87761019 transcript_region:SL2.40ch01:87756900..87761019- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00028615g0015.1 protein AED:0.09 eAED:0.09 QI:99|1|1|1|1|0.85|7|101|504; (*GB) gi|350534958|ref|NP_001234424.1| (e_value=0.0) uncharacterized protein LOC543899 [Solanum lycopersicum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-112) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT4G25640.1 (e_value=0.0) | Symbols: ATDTX35, FFT, DTX35 | detoxifying efflux carrier 35 | chr4:13076953-13078965 REVERSE LENGTH=488;; (*ITAG) Solyc06g036130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22265219-22269222 transcript_region:SL2.40ch06:22265219..22269222- go_terms:GO:0005215 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00028615g0004.1 protein AED:0.20 eAED:0.21 QI:245|0|0.66|1|0|0.33|3|1079|209; (*GB) gi|255545192|ref|XP_002513657.1| (e_value=1e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25690.2 (e_value=4e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:13090421-13090996 REVERSE LENGTH=191;; (*ITAG) Solyc06g036250.1.1 (e_value=6e-93) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:22420269-22420898 transcript_region:SL2.40ch06:22420269..22420898- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6N7 (AHRD V1 ***- Q9LTG2_ARATH)"; GO:0005515 NbS00028615g0020.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.80|1|0.6|0.66|21|0|794; (*GB) gi|296084840|emb|CBI27722.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G23490.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919831-7926499 FORWARD LENGTH=729;; (*ITAG) Solyc02g063050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29660810-29673796 transcript_region:SL2.40ch02:29660810..29673796+ functional_description:"Os05g0100900 protein (Fragment) (AHRD V1 *-*- Q0DLI2_ORYSJ)"; NbS00028615g0017.1 protein AED:0.40 eAED:0.48 QI:0|0|0|1|1|1|3|0|141; (*GB) gi|296081977|emb|CBI20982.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81016|AB32G_ARATH (e_value=3e-30) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT1G59870.1 (e_value=8e-32) | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | ABC-2 and Plant PDR ABC-type transporter family protein | chr1:22034661-22039844 FORWARD LENGTH=1469;; (*ITAG) Solyc12g098210.1.1 (e_value=6e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64158727-64166455 transcript_region:SL2.40ch12:64158727..64166455- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00028615g0022.1 protein AED:0.39 eAED:0.55 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|346306029|gb|AEO22189.1| (e_value=6e-18) ABCG subfamily transporter protein [Solanum tuberosum];; (*SWP) sp|Q8S628|PDR13_ORYSJ (e_value=1e-13) Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1;; (*ITAG) Solyc08g067610.2.1 (e_value=6e-20) genomic_reference:SL2.40ch08 gene_region:53826067-53832536 transcript_region:SL2.40ch08:53826067..53832536+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00046950g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|368; (*GB) gi|225460662|ref|XP_002267096.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257198 isoform 1 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=2e-160) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc04g071480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56062289-56063455 transcript_region:SL2.40ch04:56062289..56063455+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00046950g0005.1 protein AED:0.05 eAED:0.05 QI:218|1|1|1|0.75|0.6|5|178|234; (*GB) gi|225460658|ref|XP_002265483.1| (e_value=1e-77) PREDICTED: uncharacterized protein LOC100257188 [Vitis vinifera];; (*TAIR) AT1G21090.1 (e_value=9e-65) | Symbols: | Cupredoxin superfamily protein | chr1:7384854-7386199 FORWARD LENGTH=242;; (*ITAG) Solyc04g071500.2.1 (e_value=1e-120) genomic_reference:SL2.40ch04 gene_region:56073197-56075929 transcript_region:SL2.40ch04:56073197..56075929- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00030497g0014.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|0.75|4|0|411; (*GB) gi|224138970|ref|XP_002322947.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64422|F16P1_ORYSJ (e_value=0.0) Fructose-1,6-bisphosphatase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0267300 PE=2 SV=1;; (*TAIR) AT3G54050.2 (e_value=0.0) | Symbols: HCEF1 | high cyclic electron flow 1 | chr3:20016951-20018527 FORWARD LENGTH=417;; (*ITAG) Solyc10g086730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64800838-64802453 transcript_region:SL2.40ch10:64800838..64802453+ go_terms:GO:0005975 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 ***- D0MHZ8_RHOM4); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0005975 NbS00030497g0015.1 protein AED:0.31 eAED:0.39 QI:96|0|0.25|1|0|0.25|4|0|336; (*GB) gi|4585576|gb|AAD25541.1|AF134051_1 (e_value=2e-125) fructose-1,6-bisphosphatase precursor [Solanum tuberosum];; (*SWP) sp|Q07204|F16P1_BRANA (e_value=2e-118) Fructose-1,6-bisphosphatase, chloroplastic OS=Brassica napus GN=FBP PE=2 SV=1;; (*TAIR) AT3G54050.2 (e_value=3e-117) | Symbols: HCEF1 | high cyclic electron flow 1 | chr3:20016951-20018527 FORWARD LENGTH=417;; (*ITAG) Solyc09g011810.2.1 (e_value=2e-132) genomic_reference:SL2.40ch09 gene_region:5090038-5092652 transcript_region:SL2.40ch09:5090038..5092652+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** D0MHZ8_RHOM4); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0042132 NbS00030497g0003.1 protein AED:0.16 eAED:0.19 QI:0|0.4|0.16|0.83|1|1|6|0|401; (*GB) gi|225440568|ref|XP_002273523.1| (e_value=1e-75) PREDICTED: uncharacterized protein LOC100242619 [Vitis vinifera];; (*TAIR) AT2G37960.2 (e_value=1e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:15886962-15889180 REVERSE LENGTH=480;; (*ITAG) Solyc09g011820.2.1 (e_value=2e-146) genomic_reference:SL2.40ch09 gene_region:5092997-5097032 transcript_region:SL2.40ch09:5092997..5097032- functional_description:"Unknown Protein (AHRD V1)"; NbS00030497g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|1|1|4|0|338; (*GB) gi|351713115|gb|EHB16034.1| (e_value=3e-172) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|Q8H7U1|TBB2_ORYSJ (e_value=1e-154) Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1;; (*TAIR) AT5G23860.2 (e_value=3e-155) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc10g086760.1.1 (e_value=3e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64808095-64809620 transcript_region:SL2.40ch10:64808095..64809620- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbS00007260g0018.1 protein AED:0.05 eAED:0.05 QI:203|1|1|1|0.5|0.6|5|536|99; (*GB) gi|4960150|gb|AAD34613.1|AF153277_1 (e_value=4e-32) DNA-directed RNA polymerase IIa [Nicotiana tabacum];; (*SWP) sp|Q54FA8|RPAB2_DICDI (e_value=4e-19) DNA-directed RNA polymerases I, II, and III subunit rpabc2 OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1;; (*TAIR) AT5G51940.1 (e_value=5e-29) | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144;; (*ITAG) Solyc09g010500.2.1 (e_value=3e-32) genomic_reference:SL2.40ch09 gene_region:3879837-3882611 transcript_region:SL2.40ch09:3879837..3882611+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit-like protein (AHRD V1 **** Q9FJ98_ARATH); contains Interpro domain(s) IPR006111 DNA-directed RNA polymerase, 14 to 18 kDa subunit "; GO:0003899 NbS00007260g0007.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|108; (*GB) gi|255581052|ref|XP_002531342.1| (e_value=1e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G37530.1 (e_value=4e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15751060-15751428 FORWARD LENGTH=122;; (*ITAG) Solyc09g010480.1.1 (e_value=4e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3840007-3840399 transcript_region:SL2.40ch09:3840007..3840399+ functional_description:"Thioredoxin-related (AHRD V1 **-- B6SR54_MAIZE)"; NbS00007260g0014.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.9|1|1|1|10|404|407; (*GB) gi|255581050|ref|XP_002531341.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94AA1|UN933_ARATH (e_value=2e-171) UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1;; (*TAIR) AT3G09470.2 (e_value=3e-173) | Symbols: | Major facilitator superfamily protein | chr3:2911668-2914410 REVERSE LENGTH=437;; (*ITAG) Solyc09g010470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3830689-3838026 transcript_region:SL2.40ch09:3830689..3838026+ go_terms:GO:0015459,GO:0005515 functional_description:"UNC93-like protein MFSD11 (AHRD V1 **-- MFS11_MOUSE); contains Interpro domain(s) IPR010291 Protein of unknown function DUF895, eukaryotic "; GO:0015459,GO:0005515 NbS00007260g0016.1 protein AED:0.20 eAED:0.20 QI:281|0.8|0.75|1|0.93|0.93|16|0|601; (*GB) gi|224090667|ref|XP_002309049.1| (e_value=3e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=7e-106) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT2G37540.1 (e_value=2e-138) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:15751695-15753820 REVERSE LENGTH=321;; (*ITAG) Solyc09g010510.2.1 (e_value=3e-177) genomic_reference:SL2.40ch09 gene_region:3883077-3887813 transcript_region:SL2.40ch09:3883077..3887813- go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7LJU7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00022355g0004.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|2|0|404; (*GB) gi|225465339|ref|XP_002271842.1| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100252260 [Vitis vinifera];; (*TAIR) AT1G21150.1 (e_value=8e-41) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc04g072510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57108631-57111970 transcript_region:SL2.40ch04:57108631..57111970+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q67UH5_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00021977g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|118489418|gb|ABK96512.1| (e_value=5e-169) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q9LHG8|ELC_ARATH (e_value=3e-74) Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1;; (*TAIR) AT3G12400.1 (e_value=2e-75) | Symbols: ELC, ATELC | Ubiquitin-conjugating enzyme/RWD-like protein | chr3:3944600-3945796 REVERSE LENGTH=398;; (*ITAG) Solyc09g009270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2654007-2655221 transcript_region:SL2.40ch09:2654007..2655221- go_terms:GO:0003714,GO:0043130 functional_description:"Tumor susceptibility protein 101 (Fragment) (AHRD V1 *--- Q09H81_MACMU); contains Interpro domain(s) IPR008883 Tumour susceptibility gene 101 "; GO:0003714,GO:0043130 NbS00021977g0002.1 protein AED:0.30 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|147786900|emb|CAN62312.1| (e_value=7e-38) hypothetical protein VITISV_018204 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=4e-30) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=6e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00034932g0106.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.5|0.75|0.33|0.5|4|184|259 NbS00034932g0105.1 protein AED:0.45 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|122 NbS00062005g0005.1 protein AED:0.13 eAED:0.13 QI:176|1|0.88|1|1|1|9|445|451; (*GB) gi|359476293|ref|XP_002282161.2| (e_value=0.0) PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Vitis vinifera];; (*SWP) sp|Q67ZE1|HSDD2_ARATH (e_value=0.0) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2;; (*TAIR) AT2G26260.1 (e_value=0.0) | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178237-11182872 FORWARD LENGTH=564;; (*ITAG) Solyc02g081730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40139724-40146798 transcript_region:SL2.40ch02:40139724..40146798+ go_terms:GO:0047012 functional_description:"Sterol-4-alpha-carboxylate 3-dehydrogenase decarboxylating (AHRD V1 **** B6TKP9_MAIZE); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0047012 NbS00023651g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|355; (*GB) gi|296082558|emb|CBI21563.3| (e_value=3e-165) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q495N2|S36A3_HUMAN (e_value=3e-21) Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2;; (*TAIR) AT4G38250.1 (e_value=3e-106) | Symbols: | Transmembrane amino acid transporter family protein | chr4:17935533-17936843 FORWARD LENGTH=436;; (*ITAG) Solyc03g032090.1.1 (e_value=2e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8889972-8891255 transcript_region:SL2.40ch03:8889972..8891255+ go_terms:GO:0015187 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015187 NbS00023651g0008.1 protein AED:0.11 eAED:0.11 QI:379|1|1|1|0.75|0.84|13|483|1143; (*GB) gi|147810085|emb|CAN64708.1| (e_value=0.0) hypothetical protein VITISV_043723 [Vitis vinifera];; (*SWP) sp|Q9HGL2|YHLA_SCHPO (e_value=6e-17) Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=2 SV=1;; (*TAIR) AT1G21630.1 (e_value=0.0) | Symbols: | Calcium-binding EF hand family protein | chr1:7581457-7587796 FORWARD LENGTH=1218;; (*ITAG) Solyc02g082540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40780785-40792518 transcript_region:SL2.40ch02:40780785..40792518- go_terms:GO:0005515 functional_description:"Actin cytoskeleton-regulatory complex protein pan1 (AHRD V1 *--- PAN1_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type IPR000261 EPS15 homology (EH) "; GO:0005515 NbS00025088g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|90|123; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=3e-67) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=6e-64) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.1 (e_value=4e-65) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15014070 REVERSE LENGTH=497;; (*ITAG) Solyc08g078650.2.1 (e_value=2e-76) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00059076g0004.1 protein AED:0.26 eAED:0.28 QI:112|0.87|0.88|1|0.62|0.77|9|516|274; (*GB) gi|350535034|ref|NP_001234684.1| (e_value=1e-147) clp-like energy-dependent protease [Solanum lycopersicum];; (*SWP) sp|Q9SAA2|CLPP6_ARATH (e_value=1e-129) ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1;; (*TAIR) AT1G11750.1 (e_value=7e-131) | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease proteolytic subunit 6 | chr1:3967609-3969535 FORWARD LENGTH=271;; (*ITAG) Solyc10g051310.1.1 (e_value=2e-150) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47391169-47396091 transcript_region:SL2.40ch10:47391169..47396091- go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** Q42886_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site "; GO:0005515,GO:0004176 NbS00012322g0004.1 protein AED:0.35 eAED:0.36 QI:0|0.75|0.69|0.92|0.58|0.53|13|0|551; (*GB) gi|224116582|ref|XP_002317337.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLQ4|ODO2A_ARATH (e_value=0.0) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1;; (*TAIR) AT5G55070.1 (e_value=0.0) | Symbols: | Dihydrolipoamide succinyltransferase | chr5:22347637-22350409 FORWARD LENGTH=464;; (*ITAG) Solyc07g064800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64009800-64015982 transcript_region:SL2.40ch07:64009800..64015982+ go_terms:GO:0004149 functional_description:"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (AHRD V1 **** B6TRW8_MAIZE); contains Interpro domain(s) IPR006255 Dihydrolipoamide succinyltransferase "; GO:0004149 NbS00012385g0001.1 protein AED:0.04 eAED:0.04 QI:724|0.90|0.83|1|0.90|0.83|12|400|1790; (*GB) gi|359482442|ref|XP_002271263.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254952 [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=2e-72) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc12g049590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46677541-46688352 transcript_region:SL2.40ch12:46677541..46688352+ go_terms:GO:0044267,GO:0008270,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-- D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0044267,GO:0008270,GO:0046488 NbS00058332g0005.1 protein AED:0.10 eAED:0.10 QI:440|1|1|1|0.83|0.92|13|372|636; (*GB) gi|255557809|ref|XP_002519934.1| (e_value=0.0) reticulon3-A3, putative [Ricinus communis];; (*TAIR) AT2G35610.1 (e_value=0.0) | Symbols: XEG113 | xyloglucanase 113 | chr2:14947617-14951106 REVERSE LENGTH=644;; (*ITAG) Solyc08g075340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56632625-56643386 transcript_region:SL2.40ch08:56632625..56643386+ go_terms:GO:0005783 functional_description:"Glycosyltransferase-like protein (AHRD V1 ***- D8SY69_SELML); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00021100g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|6|0|854; (*GB) gi|356557685|ref|XP_003547144.1| (e_value=0.0) PREDICTED: callose synthase 11-like [Glycine max];; (*SWP) sp|Q9S9U0|CALSB_ARATH (e_value=0.0) Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1;; (*TAIR) AT4G04970.1 (e_value=0.0) | Symbols: ATGSL1, ATGSL01, GSL01, GSL1 | glucan synthase-like 1 | chr4:2537039-2542434 FORWARD LENGTH=1768;; (*ITAG) Solyc02g078230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37558671-37566482 transcript_region:SL2.40ch02:37558671..37566482- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00021100g0014.1 protein AED:0.30 eAED:0.30 QI:210|0.75|0.66|1|0.37|0.44|9|0|304; (*GB) gi|255556055|ref|XP_002519062.1| (e_value=1e-135) phosphoglycerate mutase, putative [Ricinus communis];; (*SWP) sp|D3DFG8|PSPA_HYDTT (e_value=4e-17) Phosphoserine phosphatase 1 OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=pspA PE=1 SV=1;; (*TAIR) AT5G22620.2 (e_value=1e-50) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=482;; (*ITAG) Solyc02g078240.2.1 (e_value=1e-180) genomic_reference:SL2.40ch02 gene_region:37571669-37574482 transcript_region:SL2.40ch02:37571669..37574482+ functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 ***- GPMA_CYTH3); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; NbS00021100g0011.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|0.75|0.6|5|0|379; (*GB) gi|297735991|emb|CBI23965.3| (e_value=7e-90) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G21700.1 (e_value=2e-65) | Symbols: | Protein of unknown function (DUF2921) | chr4:11529956-11532844 FORWARD LENGTH=962;; (*ITAG) Solyc02g078220.1.1 (e_value=8e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37554011-37556827 transcript_region:SL2.40ch02:37554011..37556827+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021100g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|297735991|emb|CBI23965.3| (e_value=8e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g078220.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37554011-37556827 transcript_region:SL2.40ch02:37554011..37556827+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022684g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.77|0.78|1|0.94|0.89|19|372|1168; (*GB) gi|3334200|sp|O49954.1|GCSP_SOLTU (e_value=0.0) RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor;; (*SWP) sp|O49954|GCSP_SOLTU (e_value=0.0) Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1;; (*TAIR) AT4G33010.1 (e_value=0.0) | Symbols: AtGLDP1, GLDP1 | glycine decarboxylase P-protein 1 | chr4:15926852-15931150 REVERSE LENGTH=1037;; (*ITAG) Solyc08g065220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50293331-50300381 transcript_region:SL2.40ch08:50293331..50300381+ go_terms:GO:0004375 functional_description:"Glycine dehydrogenase P protein (AHRD V1 **** Q6V9T1_ORYSJ); contains Interpro domain(s) IPR003437 Glycine cleavage system P-protein "; GO:0004375 NbS00022684g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|197; (*ITAG) Solyc08g065210.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:50258271-50258822 transcript_region:SL2.40ch08:50258271..50258822+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024771g0006.1 protein AED:0.10 eAED:0.09 QI:215|0.66|0.57|1|0.5|0.57|7|31|213; (*GB) gi|224075718|ref|XP_002304734.1| (e_value=4e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q67UP9|P2C58_ORYSJ (e_value=2e-65) Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1;; (*TAIR) AT4G31860.2 (e_value=4e-67) | Symbols: | Protein phosphatase 2C family protein | chr4:15407116-15408589 REVERSE LENGTH=275;; (*ITAG) Solyc12g042570.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43370211-43384042 transcript_region:SL2.40ch12:43370211..43384042+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase (AHRD V1 **** C1MNQ4_MICPS); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00007248g0005.1 protein AED:0.39 eAED:0.39 QI:267|0.5|0.6|0.8|0.5|0.4|5|0|136; (*GB) gi|15238439|ref|NP_201341.1| (e_value=7e-55) mate efflux domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q9LUH3|LAL5_ARATH (e_value=4e-16) MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=2e-57) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc11g010380.1.1 (e_value=4e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3451737-3457412 transcript_region:SL2.40ch11:3451737..3457412- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7MN36_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00007248g0006.1 protein AED:0.41 eAED:0.41 QI:0|0.25|0|1|0.25|0|5|0|175; (*GB) gi|224097194|ref|XP_002310871.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-11) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=4e-39) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc11g010380.1.1 (e_value=7e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3451737-3457412 transcript_region:SL2.40ch11:3451737..3457412- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7MN36_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00057407g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|356562499|ref|XP_003549508.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100811571 [Glycine max];; (*TAIR) AT4G16850.1 (e_value=2e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9480699-9481640 FORWARD LENGTH=313;; (*ITAG) Solyc07g006410.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1229954-1230913 transcript_region:SL2.40ch07:1229954..1230913+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016990g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|0.5|2|0|167; (*GB) gi|62822992|gb|AAY15214.1| (e_value=3e-86) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=1e-60) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT5G06839.3 (e_value=1e-69) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g078670.1.1 (e_value=2e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59726600-59732997 transcript_region:SL2.40ch10:59726600..59732997- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00018154g0001.1 protein AED:0.17 eAED:0.17 QI:345|0.75|1|1|1|1|5|0|341; (*GB) gi|356558363|ref|XP_003547476.1| (e_value=2e-61) PREDICTED: putative transcription factor bHLH041-like [Glycine max];; (*SWP) sp|Q9LTS4|BH041_ARATH (e_value=1e-19) Putative transcription factor bHLH041 OS=Arabidopsis thaliana GN=BHLH41 PE=4 SV=1;; (*TAIR) AT5G56960.1 (e_value=1e-20) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:23038703-23041174 REVERSE LENGTH=466;; (*ITAG) Solyc07g039570.2.1 (e_value=4e-140) genomic_reference:SL2.40ch07 gene_region:45208927-45213761 transcript_region:SL2.40ch07:45208927..45213761+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00032256g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.62|0.93|0.93|0.87|16|332|597; (*GB) gi|356516321|ref|XP_003526844.1| (e_value=6e-175) PREDICTED: uncharacterized protein LOC100802446 [Glycine max];; (*SWP) sp|Q5RC80|RBM39_PONAB (e_value=1e-57) RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1;; (*TAIR) AT5G09880.1 (e_value=5e-164) | Symbols: | Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527;; (*ITAG) Solyc11g005170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:147568-156637 transcript_region:SL2.40ch11:147568..156637+ go_terms:GO:0003676,GO:0005634,GO:0000166 functional_description:"RNA splicing factor (AHRD V1 **-- C5JY77_AJEDS); contains Interpro domain(s) IPR006509 Splicing factor, CC1-like "; GO:0003676,GO:0005634,GO:0000166 NbS00016691g0013.1 protein AED:0.22 eAED:0.22 QI:90|0.93|0.94|1|0.93|0.94|17|259|849; (*GB) gi|225433588|ref|XP_002269672.1| (e_value=0.0) PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q9SVN5|SYM_ARATH (e_value=0.0) Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1;; (*TAIR) AT4G13780.1 (e_value=0.0) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00016691g0014.1 protein AED:0.30 eAED:0.30 QI:59|0.84|0.92|1|0.84|0.85|14|466|429; (*GB) gi|363806748|ref|NP_001242275.1| (e_value=3e-93) uncharacterized protein LOC100781922 precursor [Glycine max];; (*TAIR) AT4G31340.2 (e_value=1e-80) | Symbols: | myosin heavy chain-related | chr4:15205662-15208895 FORWARD LENGTH=420;; (*ITAG) Solyc07g008970.2.1 (e_value=2e-174) genomic_reference:SL2.40ch07 gene_region:3992722-3999921 transcript_region:SL2.40ch07:3992722..3999921- functional_description:"Unknown Protein (AHRD V1)"; NbS00016691g0005.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|224055851|ref|XP_002298685.1| (e_value=5e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVN5|SYM_ARATH (e_value=3e-47) Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1;; (*TAIR) AT4G13780.1 (e_value=2e-48) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=5e-56) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00041847g0003.1 protein AED:0.20 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|142; (*GB) gi|255563450|ref|XP_002522727.1| (e_value=6e-25) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FM79|PME62_ARATH (e_value=3e-21) Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1;; (*TAIR) AT5G55590.1 (e_value=2e-22) | Symbols: QRT1 | Pectin lyase-like superfamily protein | chr5:22519911-22521699 FORWARD LENGTH=380;; (*ITAG) Solyc07g065350.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64373922-64376605 transcript_region:SL2.40ch07:64373922..64376605+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S9Q8_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00009390g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|16|326|608; (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=0.0) ATP:citrate lyase [Capsicum annuum];; (*SWP) sp|Q93VT8|ACLB1_ORYSJ (e_value=0.0) ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT5G49460.1 (e_value=0.0) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc01g059880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61770639-61776611 transcript_region:SL2.40ch01:61770639..61776611- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00054871g0007.1 protein AED:0.04 eAED:0.04 QI:301|0.85|0.87|1|0.85|0.75|8|220|565; (*GB) gi|292806707|gb|ADE42483.1| (e_value=0.0) proton pump interactor 1 [Solanum tuberosum];; (*TAIR) AT4G27500.1 (e_value=2e-124) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc07g063100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62894231-62898079 transcript_region:SL2.40ch07:62894231..62898079- functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00054871g0008.1 protein AED:0.03 eAED:0.06 QI:0|0.66|0.25|1|0.66|0.5|4|0|262; (*GB) gi|147815423|emb|CAN76722.1| (e_value=1e-64) hypothetical protein VITISV_029641 [Vitis vinifera];; (*SWP) sp|P09444|LEA34_GOSHI (e_value=1e-58) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT3G22490.1 (e_value=4e-60) | Symbols: | Seed maturation protein | chr3:7969785-7970738 REVERSE LENGTH=262;; (*ITAG) Solyc09g082110.2.1 (e_value=1e-48) genomic_reference:SL2.40ch09 gene_region:63348965-63350120 transcript_region:SL2.40ch09:63348965..63350120- functional_description:"Seed maturation protein (AHRD V1 **-- Q2Q4X9_MEDTR); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbS00033699g0007.1 protein AED:0.05 eAED:0.05 QI:463|0.8|0.66|1|0.4|0.66|6|349|444; (*GB) gi|255561407|ref|XP_002521714.1| (e_value=9e-167) serine/threonine-protein kinase cx32, putative [Ricinus communis];; (*SWP) sp|P27450|CX32_ARATH (e_value=3e-134) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.1 (e_value=2e-146) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=414;; (*ITAG) Solyc00g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6674808-6680369 transcript_region:SL2.40ch00:6674808..6680369- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033699g0008.1 protein AED:0.28 eAED:0.28 QI:277|0.78|0.8|1|0.78|0.8|20|0|558; (*GB) gi|356496565|ref|XP_003517137.1| (e_value=0.0) PREDICTED: phosphatidylinositide phosphatase SAC1-like [Glycine max];; (*SWP) sp|A6QL88|SAC1_BOVIN (e_value=2e-105) Phosphatidylinositide phosphatase SAC1 OS=Bos taurus GN=SACM1L PE=2 SV=1;; (*TAIR) AT5G66020.1 (e_value=0.0) | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | Phosphoinositide phosphatase family protein | chr5:26401193-26404691 REVERSE LENGTH=593;; (*ITAG) Solyc00g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6556570-6569989 transcript_region:SL2.40ch00:6556570..6569989- go_terms:GO:0004439,GO:0043812 functional_description:"Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439,GO:0043812 NbS00043648g0003.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|421; (*GB) gi|224131728|ref|XP_002321163.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04850.1 (e_value=0.0) | Symbols: | Auxin-responsive family protein | chr2:1704298-1705608 FORWARD LENGTH=404;; (*ITAG) Solyc07g048050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56559012-56560223 transcript_region:SL2.40ch07:56559012..56560223- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6SK92_MAIZE); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; NbS00037331g0005.1 protein AED:0.14 eAED:0.14 QI:333|1|0.33|1|1|1|3|0|448; (*GB) gi|255587500|ref|XP_002534293.1| (e_value=2e-176) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=6e-65) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT2G01940.1 (e_value=3e-133) | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445;; (*ITAG) Solyc03g098070.2.1 (e_value=1e-177) genomic_reference:SL2.40ch03 gene_region:53872471-53874569 transcript_region:SL2.40ch03:53872471..53874569- go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 *--* D9ZIU3_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00056223g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.66|1|0.8|0.83|6|271|352; (*GB) gi|225436703|ref|XP_002263976.1| (e_value=3e-147) PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera];; (*SWP) sp|Q68F45|WIPI3_XENLA (e_value=5e-62) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G62770.1 (e_value=2e-139) | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23218858-23221110 REVERSE LENGTH=425;; (*ITAG) Solyc08g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:775557-780071 transcript_region:SL2.40ch08:775557..780071+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00014654g0007.1 protein AED:0.25 eAED:0.27 QI:0|0.5|0.18|0.90|0.4|0.45|11|0|625; (*GB) gi|359476152|ref|XP_002282819.2| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera];; (*ITAG) Solyc06g065710.2.1 (e_value=6e-71) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00014654g0006.1 protein AED:0.17 eAED:0.17 QI:269|1|1|1|1|1|11|459|486; (*GB) gi|849072|dbj|BAA09367.1| (e_value=0.0) A-type cyclin [Nicotiana tabacum];; (*SWP) sp|Q2QQ96|CCA21_ORYSJ (e_value=2e-154) Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1;; (*TAIR) AT5G11300.1 (e_value=1e-150) | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like cyclin 3B from Arabidopsis | chr5:3601811-3604466 REVERSE LENGTH=436;; (*ITAG) Solyc06g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37492237-37497897 transcript_region:SL2.40ch06:37492237..37497897+ go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 *-** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00020911g0009.1 protein AED:0.08 eAED:0.08 QI:91|0.5|0.66|1|0|0|3|168|252; (*GB) gi|224085656|ref|XP_002307652.1| (e_value=4e-83) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|O04017|NAC98_ARATH (e_value=2e-38) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT4G28530.2 (e_value=4e-65) | Symbols: anac074, NAC074 | NAC domain containing protein 74 | chr4:14090725-14094603 REVERSE LENGTH=315;; (*ITAG) Solyc09g025310.2.1 (e_value=3e-107) genomic_reference:SL2.40ch09 gene_region:19323700-19328080 transcript_region:SL2.40ch09:19323700..19328080- go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRP6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00020911g0002.1 protein AED:0.27 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|118486110|gb|ABK94898.1| (e_value=3e-78) unknown [Populus trichocarpa];; (*TAIR) AT2G31160.1 (e_value=3e-77) | Symbols: LSH3 | Protein of unknown function (DUF640) | chr2:13277903-13278562 FORWARD LENGTH=219;; (*ITAG) Solyc06g083860.2.1 (e_value=3e-79) genomic_reference:SL2.40ch06 gene_region:45448018-45450744 transcript_region:SL2.40ch06:45448018..45450744- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 *-*- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbC23614995g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|55 NbS00021174g0005.1 protein AED:0.15 eAED:0.16 QI:0|0.92|0.66|1|0.85|0.8|15|0|1081; (*GB) gi|359478503|ref|XP_002276796.2| (e_value=0.0) PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8LPR9|TI110_ARATH (e_value=0.0) Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1;; (*TAIR) AT1G06950.1 (e_value=0.0) | Symbols: ATTIC110, TIC110 | translocon at the inner envelope membrane of chloroplasts 110 | chr1:2130303-2135563 REVERSE LENGTH=1016;; (*ITAG) Solyc09g031780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23850782-23867903 transcript_region:SL2.40ch09:23850782..23867903- functional_description:"Tic110 family transporter chloroplast inner envelope protein Tic110 (AHRD V1 **-- A4S0R7_OSTLU)"; NbS00029395g0003.1 protein AED:0.01 eAED:0.01 QI:67|1|1|1|1|1|2|132|88 NbS00004983g0009.1 protein AED:0.30 eAED:0.30 QI:0|1|0.62|1|0.71|0.75|8|0|243; (*GB) gi|145338065|ref|NP_187006.2| (e_value=8e-78) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G03560.1 (e_value=2e-80) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:853153-856486 REVERSE LENGTH=521;; (*ITAG) Solyc10g039430.1.1 (e_value=2e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21765574-21776202 transcript_region:SL2.40ch10:21765574..21776202- functional_description:"Unknown Protein (AHRD V1)"; NbS00004983g0003.1 protein AED:0.12 eAED:0.12 QI:656|0.75|0.8|1|0|0.4|5|267|328; (*GB) gi|297744793|emb|CBI38061.3| (e_value=2e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=2e-11) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT3G03530.1 (e_value=9e-149) | Symbols: NPC4 | non-specific phospholipase C4 | chr3:842686-844970 REVERSE LENGTH=538;; (*ITAG) Solyc09g020190.2.1 (e_value=1e-131) genomic_reference:SL2.40ch09 gene_region:19185577-19189409 transcript_region:SL2.40ch09:19185577..19189409+ go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7KH02_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00020254g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|266; (*ITAG) Solyc07g049400.1.1 (e_value=7e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56997798-56998310 transcript_region:SL2.40ch07:56997798..56998310+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MVE2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020254g0121.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|0.5|1|1|4|224|104 NbS00020254g0118.1 protein AED:0.26 eAED:0.26 QI:116|0.73|0.75|0.93|0.66|0.68|16|677|665 NbS00020254g0119.1 protein AED:0.28 eAED:0.31 QI:0|0.8|0.81|1|0.7|0.81|11|332|437 NbS00020254g0120.1 protein AED:0.41 eAED:0.41 QI:0|0|0.25|0.5|0|0.25|4|398|135 NbS00033495g0004.1 protein AED:0.19 eAED:0.53 QI:0|0|0|0.5|0.66|0.75|4|0|319; (*GB) gi|225443116|ref|XP_002273285.1| (e_value=1e-38) PREDICTED: EIN3-binding F-box protein 1-like [Vitis vinifera];; (*SWP) sp|A6H779|FBXL2_BOVIN (e_value=2e-12) F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1;; (*TAIR) AT1G80630.1 (e_value=8e-24) | Symbols: | RNI-like superfamily protein | chr1:30308879-30310615 REVERSE LENGTH=578;; (*ITAG) Solyc03g117200.2.1 (e_value=3e-23) genomic_reference:SL2.40ch03 gene_region:60457109-60459160 transcript_region:SL2.40ch03:60457109..60459160+ functional_description:"F-box family protein (AHRD V1 ***- B9GNT5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC25870759g0002.1 protein AED:0.26 eAED:0.26 QI:533|1|1|1|1|1|2|21|66; (*GB) gi|356515008|ref|XP_003526193.1| (e_value=5e-33) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*TAIR) AT5G54780.1 (e_value=8e-27) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432;; (*ITAG) Solyc07g064230.2.1 (e_value=4e-37) genomic_reference:SL2.40ch07 gene_region:63680396-63685600 transcript_region:SL2.40ch07:63680396..63685600- go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00037341g0003.1 protein AED:0.21 eAED:0.25 QI:0|0.7|0.63|0.90|1|1|11|0|671; (*GB) gi|224129082|ref|XP_002320496.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O94580|YQ77_SCHPO (e_value=4e-23) Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=2 SV=1;; (*TAIR) AT5G35690.1 (e_value=8e-115) | Symbols: | CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13865027-13868117 REVERSE LENGTH=603;; (*ITAG) Solyc12g005980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:600882-605360 transcript_region:SL2.40ch12:600882..605360- functional_description:"Zinc ion binding protein (AHRD V1 *--- C6HA87_AJECH); contains Interpro domain(s) IPR013536 WLM "; NbS00037341g0005.1 protein AED:0.16 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|245; (*GB) gi|224131898|ref|XP_002328135.1| (e_value=9e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|B3QWX6|KHSE_CHLT3 (e_value=7e-30) Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=3e-88) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=3e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00043272g0004.1 protein AED:0.13 eAED:0.20 QI:74|0|0|0.75|0.33|0|4|0|319; (*GB) gi|75168231|sp|Q9AVK1.1|CS3_COFAR (e_value=7e-76) RecName: Full=Probable caffeine synthase 3; Short=CtCS3; AltName: Full=Methyltransferase-like 2; Short=CaMTL2;; (*SWP) sp|Q9AVK1|CS3_COFAR (e_value=2e-77) Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1;; (*TAIR) AT5G66430.1 (e_value=7e-55) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:26525410-26526799 REVERSE LENGTH=354;; (*ITAG) Solyc04g080660.2.1 (e_value=2e-60) genomic_reference:SL2.40ch04 gene_region:62360960-62365239 transcript_region:SL2.40ch04:62360960..62365239- go_terms:GO:0030795 functional_description:"Carboxyl methyltransferase 4 (AHRD V1 **** B0ZB58_HUMLU); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0030795 NbS00026559g0009.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|0.5|0.33|3|0|236; (*GB) gi|242058365|ref|XP_002458328.1| (e_value=3e-59) hypothetical protein SORBIDRAFT_03g031420 [Sorghum bicolor];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=9e-49) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT1G66780.1 (e_value=2e-57) | Symbols: | MATE efflux family protein | chr1:24909213-24911485 FORWARD LENGTH=485;; (*ITAG) Solyc03g034400.2.1 (e_value=9e-95) genomic_reference:SL2.40ch03 gene_region:10603581-10608309 transcript_region:SL2.40ch03:10603581..10608309- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00026559g0008.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.33|1|0|0.33|3|0|113; (*GB) gi|356499620|ref|XP_003518635.1| (e_value=1e-35) PREDICTED: MATE efflux family protein DTX1-like isoform 1 [Glycine max];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=1e-24) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G66780.1 (e_value=2e-26) | Symbols: | MATE efflux family protein | chr1:24909213-24911485 FORWARD LENGTH=485;; (*ITAG) Solyc03g034400.2.1 (e_value=4e-49) genomic_reference:SL2.40ch03 gene_region:10603581-10608309 transcript_region:SL2.40ch03:10603581..10608309- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00026559g0007.1 protein AED:0.03 eAED:0.03 QI:92|1|1|1|1|1|3|342|858; (*GB) gi|356562613|ref|XP_003549564.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=0.0) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc09g005160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:151592-155869 transcript_region:SL2.40ch09:151592..155869+ go_terms:GO:0043008 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-*- B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0043008 NbS00050574g0005.1 protein AED:0.32 eAED:0.37 QI:0|0.81|0.83|1|0.72|0.66|12|227|427; (*GB) gi|350536611|ref|NP_001233999.1| (e_value=0.0) beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum];; (*SWP) sp|Q94F27|B3GTB_ARATH (e_value=1e-145) Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1;; (*TAIR) AT5G53340.2 (e_value=7e-147) | Symbols: | Galactosyltransferase family protein | chr5:21641045-21643195 REVERSE LENGTH=337;; (*ITAG) Solyc08g081920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00035939g0004.1 protein AED:0.19 eAED:0.20 QI:356|0.85|0.8|1|0.28|0.4|15|259|539; (*GB) gi|255556616|ref|XP_002519342.1| (e_value=0.0) Aspartic proteinase oryzasin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q42456|ASPR1_ORYSJ (e_value=6e-159) Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=1e-160) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc09g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63837132-63841454 transcript_region:SL2.40ch09:63837132..63841454+ go_terms:GO:0004190 functional_description:"Aspartic proteinase 2 (AHRD V1 **-* Q948P0_SOYBN); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00011976g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.2|1|0.75|0.8|5|0|1258; (*GB) gi|297742337|emb|CBI34486.3| (e_value=4e-174) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G53440.1 (e_value=3e-68) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21683679-21687970 REVERSE LENGTH=1181;; (*ITAG) Solyc08g082410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62387542-62395462 transcript_region:SL2.40ch08:62387542..62395462+ functional_description:"Eukaryotic translation initiation factor 3 subunit 10-like (AHRD V1 *--- Q5SN81_ORYSJ)"; NbS00011976g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.85|0.75|0.87|0.42|0.37|8|299|201; (*GB) gi|359473918|ref|XP_002269576.2| (e_value=3e-76) PREDICTED: uncharacterized protein LOC100263310 [Vitis vinifera];; (*TAIR) AT4G23895.3 (e_value=1e-73) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr4:12422883-12426318 FORWARD LENGTH=467;; (*ITAG) Solyc08g082420.2.1 (e_value=9e-107) genomic_reference:SL2.40ch08 gene_region:62399322-62402936 transcript_region:SL2.40ch08:62399322..62402936+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00011976g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|117 NbS00042139g0011.1 protein AED:0.02 eAED:0.03 QI:152|0.66|0.5|1|1|1|4|349|485; (*GB) gi|225460869|ref|XP_002277314.1| (e_value=7e-174) PREDICTED: uncharacterized protein LOC100245205 [Vitis vinifera];; (*TAIR) AT3G20300.1 (e_value=1e-159) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc12g014450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5420744-5424833 transcript_region:SL2.40ch12:5420744..5424833+ functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00042139g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|493; (*GB) gi|11071974|dbj|BAB17320.1| (e_value=0.0) elicitor inducible beta-1,3-glucanase NtEIG-E76 [Nicotiana tabacum];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=3e-122) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT5G55180.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22388834-22390561 FORWARD LENGTH=465;; (*ITAG) Solyc12g014420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5390285-5392254 transcript_region:SL2.40ch12:5390285..5392254+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00042139g0012.1 protein AED:0.35 eAED:0.35 QI:0|0.55|0.6|0.7|0.55|0.5|10|1208|452; (*GB) gi|224142297|ref|XP_002324495.1| (e_value=2e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57700.3 (e_value=2e-130) | Symbols: | BNR/Asp-box repeat family protein | chr5:23375257-23376943 FORWARD LENGTH=358;; (*ITAG) Solyc12g014440.1.1 (e_value=5e-171) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5414132-5417709 transcript_region:SL2.40ch12:5414132..5417709- functional_description:"BNR/Asp-box repeat protein (AHRD V1 ***- D4WAX9_BACOV); contains Interpro domain(s) IPR011040 Neuraminidase "; NbS00016388g0111.1 protein AED:0.10 eAED:0.10 QI:175|1|1|1|0.5|0.6|5|6|352 NbS00016388g0113.1 protein AED:0.03 eAED:0.03 QI:618|0.33|0.5|0.75|1|1|4|1101|280 NbS00016388g0102.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|346 NbS00016388g0106.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|143 NbS00016388g0112.1 protein AED:0.29 eAED:0.29 QI:148|1|1|1|0.75|0.6|5|370|239 NbS00020393g0001.1 protein AED:0.39 eAED:0.50 QI:72|-1|0|1|-1|1|1|0|102 NbS00020393g0004.1 protein AED:0.41 eAED:0.65 QI:0|0|0|1|0|0|2|0|88 NbS00020393g0005.1 protein AED:0.55 eAED:0.69 QI:0|0|0|0.75|0|0|4|0|74 NbS00027990g0009.1 protein AED:0.32 eAED:0.35 QI:0|0.33|0.5|1|0.66|0.5|4|0|227; (*GB) gi|224092562|ref|XP_002309663.1| (e_value=2e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=5e-66) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT5G25170.1 (e_value=5e-101) | Symbols: | PPPDE putative thiol peptidase family protein | chr5:8693257-8694438 FORWARD LENGTH=218;; (*ITAG) Solyc06g068380.2.1 (e_value=4e-90) genomic_reference:SL2.40ch06 gene_region:38752922-38754704 transcript_region:SL2.40ch06:38752922..38754704- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00027990g0010.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|162; (*GB) gi|77745507|gb|ABB02652.1| (e_value=8e-68) adenylate kinase family-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=3e-21) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT3G01820.1 (e_value=1e-31) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293981-295357 REVERSE LENGTH=263;; (*ITAG) Solyc03g005050.2.1 (e_value=7e-69) genomic_reference:SL2.40ch03 gene_region:44287-46883 transcript_region:SL2.40ch03:44287..46883+ go_terms:GO:0006139 functional_description:"Adenylate kinase family-like protein (AHRD V1 ***- Q38JG0_SOLTU); contains Interpro domain(s) IPR000850 Adenylate kinase "; GO:0006139 NbS00035690g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.53|0.64|0.78|0.76|0.78|14|339|617; (*GB) gi|225423909|ref|XP_002278845.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera];; (*TAIR) AT1G25540.2 (e_value=2e-140) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE LENGTH=727;; (*ITAG) Solyc12g070100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00044405g0006.1 protein AED:0.11 eAED:0.11 QI:101|0.75|0.8|1|0.5|1|5|262|575; (*GB) gi|2493321|sp|Q40588.1|ASO_TOBAC (e_value=0.0) RecName: Full=L-ascorbate oxidase; Short=ASO; Short=Ascorbase; Flags: Precursor;; (*SWP) sp|Q40588|ASO_TOBAC (e_value=0.0) L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1;; (*TAIR) AT5G21105.1 (e_value=0.0) | Symbols: | Plant L-ascorbate oxidase | chr5:7172727-7177409 FORWARD LENGTH=588;; (*ITAG) Solyc11g062440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46585315-46591410 transcript_region:SL2.40ch11:46585315..46591410- go_terms:GO:0005576,GO:0055114 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants "; GO:0005576,GO:0055114 NbS00022584g0013.1 protein AED:0.09 eAED:0.09 QI:0|0.87|0.88|1|0.75|0.88|9|887|501; (*GB) gi|225425270|ref|XP_002267902.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Vitis vinifera];; (*SWP) sp|Q8VYZ0|ORTH2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1;; (*TAIR) AT1G57820.1 (e_value=0.0) | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645;; (*ITAG) Solyc05g023680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:28960621-28965003 transcript_region:SL2.40ch05:28960621..28965003+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase UHRF1 (AHRD V1 *--* UHRF1_RAT); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0004842 NbS00022584g0014.1 protein AED:0.04 eAED:0.04 QI:357|1|0.91|1|0.81|0.83|12|434|622; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=0.0) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=0.0) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc05g017980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19336286-19343775 transcript_region:SL2.40ch05:19336286..19343775+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00005749g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|1|1|3|0|197; (*GB) gi|391738040|sp|P0DI50.1|CASP_TOBAC (e_value=3e-59) RecName: Full=Casparian strip membrane protein 1;; (*SWP) sp|P0DI50|CASP_TOBAC (e_value=1e-60) Casparian strip membrane protein 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G36100.1 (e_value=8e-35) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206;; (*ITAG) Solyc10g083250.1.1 (e_value=5e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62419572-62420904 transcript_region:SL2.40ch10:62419572..62420904- functional_description:"UPF0497 membrane protein 7 (AHRD V1 ***- U4977_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00005749g0008.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0|0|2|0|245; (*GB) gi|297740148|emb|CBI30330.3| (e_value=3e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G15040.1 (e_value=4e-23) | Symbols: | Protein of unknown function, DUF584 | chr3:5065445-5066176 REVERSE LENGTH=243;; (*ITAG) Solyc09g010140.1.1 (e_value=1e-90) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3516951-3517673 transcript_region:SL2.40ch09:3516951..3517673+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00054890g0003.1 protein AED:0.27 eAED:0.27 QI:276|1|1|1|1|1|4|118|287; (*GB) gi|2114048|dbj|BAA20075.1| (e_value=0.0) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=0.0) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=0.0) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc08g081190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61427665-61431015 transcript_region:SL2.40ch08:61427665..61431015+ go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- O24662_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00020334g0017.1 protein AED:0.31 eAED:0.31 QI:3|0.33|0|0.5|1|1|4|0|203; (*GB) gi|297744835|emb|CBI38103.3| (e_value=3e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54RF3|EI2BE_DICDI (e_value=3e-38) Translation initiation factor eIF-2B subunit epsilon OS=Dictyostelium discoideum GN=eif2b5 PE=3 SV=1;; (*TAIR) AT2G34970.1 (e_value=6e-95) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=1e-132) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00020334g0016.1 protein AED:0.16 eAED:0.16 QI:276|0.94|0.85|1|0.78|0.9|20|0|1060; (*GB) gi|255542432|ref|XP_002512279.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0WP44|HASTY_ARATH (e_value=0.0) Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1;; (*TAIR) AT3G05040.1 (e_value=0.0) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202;; (*ITAG) Solyc01g098170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80505430-80517080 transcript_region:SL2.40ch01:80505430..80517080+ go_terms:GO:0005487 functional_description:"Exportin 5 (Fragment) (AHRD V1 *--- Q5JTE8_HUMAN); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005487 NbS00020334g0015.1 protein AED:0.40 eAED:0.40 QI:0|1|0.75|1|1|1|4|248|244; (*GB) gi|225451181|ref|XP_002272927.1| (e_value=2e-119) PREDICTED: protein HASTY 1 [Vitis vinifera];; (*SWP) sp|Q0WP44|HASTY_ARATH (e_value=1e-92) Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1;; (*TAIR) AT3G05040.1 (e_value=1e-93) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202;; (*ITAG) Solyc01g098170.2.1 (e_value=2e-145) genomic_reference:SL2.40ch01 gene_region:80505430-80517080 transcript_region:SL2.40ch01:80505430..80517080+ go_terms:GO:0005487 functional_description:"Exportin 5 (Fragment) (AHRD V1 *--- Q5JTE8_HUMAN); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005487 NbS00047859g0007.1 protein AED:0.11 eAED:0.11 QI:155|0.9|0.90|1|0.8|0.90|11|154|721; (*GB) gi|225470662|ref|XP_002269263.1| (e_value=2e-180) PREDICTED: pathogenesis-related homeodomain protein [Vitis vinifera];; (*SWP) sp|P48785|PRH_ARATH (e_value=7e-94) Pathogenesis-related homeodomain protein OS=Arabidopsis thaliana GN=PRH PE=2 SV=1;; (*TAIR) AT4G29940.1 (e_value=6e-95) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=796;; (*ITAG) Solyc07g008730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3696781-3705483 transcript_region:SL2.40ch07:3696781..3705483- go_terms:GO:0008270,GO:0006355,GO:0045449,GO:0005622 functional_description:"Pathogenesis-related homeodomain protein (AHRD V1 *--- PRH_ARATH); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270,GO:0006355,GO:0045449,GO:0005622 NbS00047859g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.33|0.83|1|1|6|0|194; (*GB) gi|90823167|gb|ABE01085.1| (e_value=2e-70) BTF3 [Nicotiana benthamiana];; (*SWP) sp|Q6PC91|BT3L4_DANRE (e_value=1e-33) Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1;; (*TAIR) AT1G73230.1 (e_value=1e-65) | Symbols: | Nascent polypeptide-associated complex NAC | chr1:27540506-27541364 REVERSE LENGTH=165;; (*ITAG) Solyc07g008720.2.1 (e_value=7e-71) genomic_reference:SL2.40ch07 gene_region:3694316-3696017 transcript_region:SL2.40ch07:3694316..3696017+ go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex subunit beta (AHRD V1 **-- B2W6E2_PYRTR); contains Interpro domain(s) IPR002715 Nascent polypeptide-associated complex NAC "; GO:0051082 NbS00058888g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|0.66|0.75|4|0|208; (*GB) gi|116787427|gb|ABK24504.1| (e_value=1e-101) unknown [Picea sitchensis];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=4e-47) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT5G14390.1 (e_value=8e-102) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:4637551-4639575 REVERSE LENGTH=369;; (*ITAG) Solyc02g089320.2.1 (e_value=4e-120) genomic_reference:SL2.40ch02 gene_region:45756372-45760193 transcript_region:SL2.40ch02:45756372..45760193+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00010689g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|121; (*GB) gi|297848802|ref|XP_002892282.1| (e_value=2e-35) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O23038|PME8_ARATH (e_value=2e-36) Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2;; (*TAIR) AT1G05310.1 (e_value=2e-37) | Symbols: | Pectin lyase-like superfamily protein | chr1:1550615-1552434 REVERSE LENGTH=393;; (*ITAG) Solyc07g043240.2.1 (e_value=2e-46) genomic_reference:SL2.40ch07 gene_region:54205379-54208245 transcript_region:SL2.40ch07:54205379..54208245- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S4Z6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00002126g0001.1 protein AED:0.13 eAED:0.62 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|147799847|emb|CAN66059.1| (e_value=1e-65) hypothetical protein VITISV_017037 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=1e-51) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=8e-53) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=3e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00029380g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|255566827|ref|XP_002524397.1| (e_value=2e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G49000.1 (e_value=4e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18123559-18124029 REVERSE LENGTH=156;; (*ITAG) Solyc06g069250.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39419191-39419670 transcript_region:SL2.40ch06:39419191..39419670+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029380g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.2|0.16|0.83|1|1|6|0|208; (*GB) gi|297737875|emb|CBI27076.3| (e_value=4e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6DYE4|Y1609_ARATH (e_value=4e-60) Uncharacterized protein At1g26090, chloroplastic OS=Arabidopsis thaliana GN=At1g26090 PE=1 SV=1;; (*TAIR) AT1G26090.1 (e_value=3e-61) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:9020509-9022619 FORWARD LENGTH=455;; (*ITAG) Solyc05g009920.2.1 (e_value=1e-81) genomic_reference:SL2.40ch05 gene_region:4146247-4150261 transcript_region:SL2.40ch05:4146247..4150261+ functional_description:"Anion-transporting ATPase (AHRD V1 ***- B0JG18_MICAN)"; NbS00029380g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.87|0.66|0.88|1|1|9|0|992; (*GB) gi|356498346|ref|XP_003518014.1| (e_value=0.0) PREDICTED: protein CHUP1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=0.0) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT3G25690.2 (e_value=0.0) | Symbols: CHUP1 | Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=1004;; (*ITAG) Solyc05g009930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4150239-4155584 transcript_region:SL2.40ch05:4150239..4155584- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; NbS00029380g0017.1 protein AED:0.22 eAED:0.22 QI:218|0.88|0.8|1|0.88|0.9|10|0|545; (*GB) gi|297737877|emb|CBI27078.3| (e_value=7e-151) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G25680.1 (e_value=2e-124) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). | chr3:9349693-9352258 FORWARD LENGTH=558;; (*ITAG) Solyc05g009940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4157776-4163933 transcript_region:SL2.40ch05:4157776..4163933- functional_description:"S-layer domain protein (AHRD V1 *-*- C7QMM1_CYAP0); contains Interpro domain(s) IPR001119 S-layer homology region "; NbS00004391g0026.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|521; (*GB) gi|1360141|emb|CAA66616.1| (e_value=0.0) protein kinase [Solanum berthaultii];; (*SWP) sp|A2YBX5|G11A_ORYSI (e_value=2e-160) Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1;; (*TAIR) AT1G79250.2 (e_value=0.0) | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810336-29812186 REVERSE LENGTH=555;; (*ITAG) Solyc12g017390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6640415-6642426 transcript_region:SL2.40ch12:6640415..6642426+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q41297_9SOLN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004391g0017.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|370; (*GB) gi|224109078|ref|XP_002315075.1| (e_value=4e-142) ZIP transporter [Populus trichocarpa];; (*SWP) sp|O81123|ZIP1_ARATH (e_value=4e-117) Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1;; (*TAIR) AT3G12750.1 (e_value=3e-118) | Symbols: ZIP1 | zinc transporter 1 precursor | chr3:4051950-4053156 REVERSE LENGTH=355;; (*ITAG) Solyc02g032100.2.1 (e_value=1e-127) genomic_reference:SL2.40ch02 gene_region:18213494-18215411 transcript_region:SL2.40ch02:18213494..18215411+ go_terms:GO:0000006,GO:0000007 functional_description:"Low affinity zinc transporter (AHRD V1 **** A3LU47_PICST); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006,GO:0000007 NbS00004391g0018.1 protein AED:0.12 eAED:0.12 QI:321|0.5|1|1|0.25|0.4|5|2958|263; (*GB) gi|356526415|ref|XP_003531813.1| (e_value=1e-68) PREDICTED: ribosomal RNA large subunit methyltransferase I-like [Glycine max];; (*TAIR) AT1G54310.1 (e_value=4e-70) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:20273618-20274678 FORWARD LENGTH=245; NbS00004391g0020.1 protein AED:0.34 eAED:0.34 QI:183|1|1|1|1|0.66|3|464|165; (*GB) gi|2493148|sp|Q40585.1|VATL_TOBAC (e_value=2e-88) RecName: Full=V-type proton ATPase 16 kDa proteolipid subunit; Short=V-ATPase 16 kDa proteolipid subunit; AltName: Full=Vacuolar proton pump 16 kDa proteolipid subunit;; (*SWP) sp|Q40585|VATL_TOBAC (e_value=6e-90) V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=5e-91) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=6e-92) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00004391g0021.1 protein AED:0.10 eAED:0.13 QI:88|0.76|0.85|1|0.69|0.71|14|291|809; (*GB) gi|297736112|emb|CBI24150.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0JA83|KSL3_ORYSJ (e_value=3e-167) Ent-kaurene synthase-like 3 OS=Oryza sativa subsp. japonica GN=KSL3 PE=2 SV=1;; (*TAIR) AT1G79460.1 (e_value=3e-129) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785;; (*ITAG) Solyc07g066670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65260006-65266324 transcript_region:SL2.40ch07:65260006..65266324- go_terms:GO:0009899 functional_description:"Ent-kaurene synthase (AHRD V1 **** B9HI37_POPTR); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0009899 NbS00004391g0030.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.44|0.88|0.87|1|9|0|371; (*GB) gi|388521419|gb|AFK48771.1| (e_value=2e-163) unknown [Lotus japonicus];; (*SWP) sp|Q9SA35|ALIS4_ARATH (e_value=7e-160) Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=2;; (*TAIR) AT1G16360.1 (e_value=5e-161) | Symbols: | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr1:5593493-5595179 REVERSE LENGTH=336;; (*ITAG) Solyc05g054800.1.1 (e_value=6e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63771846-63772898 transcript_region:SL2.40ch05:63771846..63772898- go_terms:GO:0005515 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515 NbS00004391g0031.1 protein AED:0.42 eAED:0.42 QI:0|1|0.75|1|1|0.5|4|0|152; (*GB) gi|302142598|emb|CBI19801.3| (e_value=6e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G24160.1 (e_value=5e-78) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12539871-12542210 FORWARD LENGTH=418;; (*ITAG) Solyc07g032180.2.1 (e_value=2e-105) genomic_reference:SL2.40ch07 gene_region:35654272-35659176 transcript_region:SL2.40ch07:35654272..35659176+ functional_description:"Abhydrolase domain-containing protein 5 (AHRD V1 **-- B4FAQ7_MAIZE)"; NbS00016754g0003.1 protein AED:0.30 eAED:0.36 QI:0|1|0.6|1|1|1|5|0|195; (*GB) gi|79387510|ref|NP_186929.2| (e_value=5e-78) tyrosine specific protein phosphatase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=7e-67) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT3G02800.1 (e_value=1e-80) | Symbols: | Tyrosine phosphatase family protein | chr3:606638-607704 REVERSE LENGTH=203;; (*ITAG) Solyc04g056340.2.1 (e_value=2e-107) genomic_reference:SL2.40ch04 gene_region:53237131-53239123 transcript_region:SL2.40ch04:53237131..53239123+ go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00017463g0014.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|2|307|283; (*GB) gi|790929|gb|AAC41651.1| (e_value=3e-36) histone H1 [Nicotiana tabacum];; (*SWP) sp|P37218|H1_SOLLC (e_value=5e-23) Histone H1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT1G06760.1 (e_value=4e-19) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr1:2076687-2077616 REVERSE LENGTH=274;; (*ITAG) Solyc06g084020.2.1 (e_value=3e-33) genomic_reference:SL2.40ch06 gene_region:45575496-45576696 transcript_region:SL2.40ch06:45575496..45576696- go_terms:GO:0005634,GO:0000786 functional_description:"Histone H1 (AHRD V1 *-*- O65820_SOLLC); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbS00017463g0004.1 protein AED:0.19 eAED:0.19 QI:208|1|1|1|1|1|6|433|313; (*GB) gi|356499831|ref|XP_003518740.1| (e_value=1e-115) PREDICTED: methyltransferase-like protein 7A-like [Glycine max];; (*SWP) sp|Q562C4|MET7B_RAT (e_value=1e-33) Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b PE=1 SV=1;; (*TAIR) AT1G69523.1 (e_value=8e-99) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:26129827-26131157 FORWARD LENGTH=300;; (*ITAG) Solyc06g084030.2.1 (e_value=4e-148) genomic_reference:SL2.40ch06 gene_region:45578411-45582664 transcript_region:SL2.40ch06:45578411..45582664- go_terms:GO:0008152 functional_description:"Methyltransferase like 7A (AHRD V1 ***- Q3KRE2_RAT); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00017463g0015.1 protein AED:0.24 eAED:0.24 QI:109|1|1|1|0.83|0.85|7|341|518; (*GB) gi|356536806|ref|XP_003536925.1| (e_value=9e-166) PREDICTED: poly(rC)-binding protein 1-like [Glycine max];; (*SWP) sp|P57722|PCBP3_MOUSE (e_value=8e-22) Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3;; (*TAIR) AT3G04610.1 (e_value=3e-139) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc09g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60118119-60126053 transcript_region:SL2.40ch09:60118119..60126053+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00017463g0020.1 protein AED:0.23 eAED:0.23 QI:191|1|1|1|0.71|0.87|8|563|297; (*GB) gi|255559965|ref|XP_002521001.1| (e_value=1e-129) Protein mrp, putative [Ricinus communis];; (*SWP) sp|Q54F15|NUBPL_DICDI (e_value=2e-93) Iron-sulfur protein NUBPL OS=Dictyostelium discoideum GN=nubpl PE=3 SV=1;; (*TAIR) AT4G19540.1 (e_value=4e-114) | Symbols: INDL | IND1(iron-sulfur protein required for NADH dehydrogenase)-like | chr4:10657517-10659094 FORWARD LENGTH=313;; (*ITAG) Solyc06g083990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45555489-45559957 transcript_region:SL2.40ch06:45555489..45559957+ go_terms:GO:0042803 functional_description:"Cytosolic Fe-S cluster assembly factor NUBP1 homolog (AHRD V1 **-- NUBP1_DICDI); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0042803 NbS00003245g0013.1 protein AED:0.08 eAED:0.08 QI:480|1|1|1|0.75|0.77|9|484|996; (*GB) gi|359474019|ref|XP_002269404.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera];; (*TAIR) AT1G63300.1 (e_value=0.0) | Symbols: | Myosin heavy chain-related protein | chr1:23482193-23486067 FORWARD LENGTH=1029;; (*ITAG) Solyc08g007970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2472012-2478084 transcript_region:SL2.40ch08:2472012..2478084+ go_terms:GO:0016539 functional_description:"SKIP interacting protein 24 (Fragment) (AHRD V1 *--- B8Q8B0_ORYSI); contains Interpro domain(s) IPR006141 Intein splicing site "; GO:0016539 NbS00003245g0014.1 protein AED:0.08 eAED:0.09 QI:9|1|0.33|1|0.5|0.33|3|0|205; (*GB) gi|225426371|ref|XP_002269437.1| (e_value=5e-75) PREDICTED: protein LURP-one-related 4 [Vitis vinifera];; (*SWP) sp|Q9LUM1|LOR11_ARATH (e_value=3e-52) Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1;; (*TAIR) AT3G14260.1 (e_value=2e-53) | Symbols: | Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230;; (*ITAG) Solyc12g056310.1.1 (e_value=1e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47638525-47639411 transcript_region:SL2.40ch12:47638525..47639411+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00003245g0011.1 protein AED:0.03 eAED:0.05 QI:74|1|0.8|1|0.75|0.8|5|0|659; (*GB) gi|359474015|ref|XP_002269627.2| (e_value=0.0) PREDICTED: RNA-binding protein NOB1-like [Vitis vinifera];; (*SWP) sp|Q4R537|NOB1_MACFA (e_value=5e-33) RNA-binding protein NOB1 OS=Macaca fascicularis GN=NOB1 PE=2 SV=1;; (*TAIR) AT5G41190.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16487628-16490012 REVERSE LENGTH=602;; (*ITAG) Solyc08g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2487058-2490650 transcript_region:SL2.40ch08:2487058..2490650- functional_description:"RNA-binding protein NOB1 (AHRD V1 *-*- C1C2G7_9MAXI); contains Interpro domain(s) IPR017117 D-site 20S pre-rRNA nuclease "; NbS00003245g0012.1 protein AED:0.12 eAED:0.12 QI:206|1|1|1|0.66|0.42|7|216|333; (*GB) gi|225426387|ref|XP_002269706.1| (e_value=9e-165) PREDICTED: probable serine racemase [Vitis vinifera];; (*SWP) sp|Q54HH2|SRR_DICDI (e_value=4e-94) Probable serine racemase OS=Dictyostelium discoideum GN=srr PE=3 SV=1;; (*TAIR) AT4G11640.1 (e_value=6e-158) | Symbols: ATSR, SR | serine racemase | chr4:7021770-7023252 FORWARD LENGTH=331;; (*ITAG) Solyc08g008010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2504117-2508014 transcript_region:SL2.40ch08:2504117..2508014- go_terms:GO:0030378 functional_description:"Serine/threonine dehydratase (AHRD V1 **** A8J977_CHLRE); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0030378 NbS00011407g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=2e-101) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT3G16330.1 (e_value=4e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535263-5535880 FORWARD LENGTH=205;; (*ITAG) Solyc06g066500.1.1 (e_value=8e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38134125-38134568 transcript_region:SL2.40ch06:38134125..38134568- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 ***- Q9FQZ6_TOBAC)"; NbS00061461g0007.1 protein AED:0.37 eAED:0.38 QI:185|0.75|0.4|1|0.75|0.8|5|0|123; (*GB) gi|297736031|emb|CBI24069.3| (e_value=2e-67) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G07340.2 (e_value=9e-62) | Symbols: PFD1 | PREFOLDIN 1 | chr2:3045644-3046606 FORWARD LENGTH=127;; (*ITAG) Solyc07g042620.2.1 (e_value=2e-74) genomic_reference:SL2.40ch07 gene_region:53412441-53421827 transcript_region:SL2.40ch07:53412441..53421827+ go_terms:GO:0005515,GO:0003700 functional_description:"Prefoldin subunit 1 (AHRD V1 ***- B6SIP7_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0005515,GO:0003700 NbS00061461g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.72|0.91|1|0.81|0.83|12|0|493; (*GB) gi|6456434|dbj|BAA86930.1| (e_value=0.0) lupeol synthase [Olea europaea];; (*SWP) sp|Q8W3Z2|LUPS_BETPL (e_value=0.0) Lupeol synthase OS=Betula platyphylla GN=OSCBPW PE=1 SV=1;; (*TAIR) AT1G78960.1 (e_value=1e-170) | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:29696722-29701024 FORWARD LENGTH=763;; (*ITAG) Solyc07g042630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53421832-53432164 transcript_region:SL2.40ch07:53421832..53432164- go_terms:GO:0042300 functional_description:"Beta-Amyrin Synthase (AHRD V1 **** O82146_PANGI); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0042300 NbS00021937g0006.1 protein AED:0.10 eAED:0.20 QI:0|0|0|1|0.42|0.25|8|0|942; (*GB) gi|359496865|ref|XP_002270899.2| (e_value=1e-80) PREDICTED: calcium-transporting ATPase 12, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=8e-59) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=6e-60) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc02g090560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46674600-46677536 transcript_region:SL2.40ch02:46674600..46677536- go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00017937g0006.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.25|1|0|0.25|4|0|224; (*GB) gi|343410567|gb|ACV92012.2| (e_value=9e-84) WRKY transcription factor 10 [(Populus tomentosa x P. bolleana) x P. tomentosa];; (*SWP) sp|Q9SVB7|WRK13_ARATH (e_value=4e-46) Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1;; (*TAIR) AT4G39410.1 (e_value=3e-47) | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding protein 13 | chr4:18332937-18334789 REVERSE LENGTH=304;; (*ITAG) Solyc04g051540.2.1 (e_value=6e-109) genomic_reference:SL2.40ch04 gene_region:49935987-49940182 transcript_region:SL2.40ch04:49935987..49940182- go_terms:GO:0045449 functional_description:"WRKY family transcription factor (AHRD V1 *-*- D7LBR5_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00040421g0003.1 protein AED:0.00 eAED:0.00 QI:171|1|0.5|1|1|1|2|0|148; (*GB) gi|350540006|ref|NP_001233840.1| (e_value=1e-85) flavonoid biosynthesis oxidoreductase protein [Solanum lycopersicum];; (*SWP) sp|Q40062|IDS3_HORVU (e_value=3e-21) 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3;; (*TAIR) AT5G24530.1 (e_value=4e-67) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc03g080190.2.1 (e_value=3e-88) genomic_reference:SL2.40ch03 gene_region:45625441-45630380 transcript_region:SL2.40ch03:45625441..45630380- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase-like protein (AHRD V1 **-- Q9FLV0_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbC25581371g0003.1 protein AED:0.00 eAED:0.00 QI:19|1|1|1|1|1|3|147|91; (*GB) gi|133711802|gb|ABO36620.1| (e_value=3e-46) eukaryotic-type carbonic anhydrase family protein [Solanum lycopersicum];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=1e-19) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT4G20990.1 (e_value=8e-28) | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase 4 | chr4:11219772-11221126 FORWARD LENGTH=267;; (*ITAG) Solyc10g079270.1.1 (e_value=6e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60155366-60158037 transcript_region:SL2.40ch10:60155366..60158037+ go_terms:GO:0006730 functional_description:"Carbonic anhydrase family protein (AHRD V1 ***- D7MFG3_ARALY); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0006730 NbS00032295g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|111073727|dbj|BAF02552.1| (e_value=0.0) hypothetical protein [Nicotiana benthamiana];; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=6e-97) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=5e-98) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc01g009320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3500773-3502283 transcript_region:SL2.40ch01:3500773..3502283- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00058883g0012.1 protein AED:0.38 eAED:0.38 QI:86|1|1|1|0.5|0.33|3|283|104 NbS00058883g0004.1 protein AED:0.40 eAED:0.40 QI:0|0.5|0|1|1|1|3|0|201; (*GB) gi|359497021|ref|XP_002265622.2| (e_value=6e-87) PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Vitis vinifera];; (*TAIR) AT2G35660.1 (e_value=6e-86) | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductase family protein | chr2:14988499-14990320 FORWARD LENGTH=439;; (*ITAG) Solyc06g060880.2.1 (e_value=5e-98) genomic_reference:SL2.40ch06 gene_region:35282556-35285882 transcript_region:SL2.40ch06:35282556..35285882- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00058883g0008.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|130; (*GB) gi|225469844|ref|XP_002265824.1| (e_value=5e-29) PREDICTED: uncharacterized protein LOC100253628 [Vitis vinifera];; (*TAIR) AT5G61630.1 (e_value=8e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24773803-24774502 REVERSE LENGTH=147;; (*ITAG) Solyc08g078060.2.1 (e_value=2e-46) genomic_reference:SL2.40ch08 gene_region:59078277-59080286 transcript_region:SL2.40ch08:59078277..59080286- functional_description:"Unknown Protein (AHRD V1)"; NbS00058883g0014.1 protein AED:0.22 eAED:0.28 QI:0|0|0.25|1|0|0.5|4|0|356; (*GB) gi|224071216|ref|XP_002303376.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02890.1 (e_value=4e-40) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:670207-671454 REVERSE LENGTH=353;; (*ITAG) Solyc08g078030.2.1 (e_value=6e-124) genomic_reference:SL2.40ch08 gene_region:59068934-59071763 transcript_region:SL2.40ch08:59068934..59071763- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 *--- B9IMB9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00002901g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|1|0.8|5|0|321; (*GB) gi|359486373|ref|XP_002277384.2| (e_value=1e-177) PREDICTED: uncharacterized protein LOC100262072 [Vitis vinifera];; (*TAIR) AT2G40320.1 (e_value=4e-173) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052450.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61810426-61814671 transcript_region:SL2.40ch05:61810426..61814671- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002901g0010.1 protein AED:0.23 eAED:0.23 QI:317|1|1|1|1|1|2|130|83 NbS00002901g0013.1 protein AED:0.22 eAED:0.23 QI:0|1|0.77|1|0.75|0.88|9|0|241; (*GB) gi|388512733|gb|AFK44428.1| (e_value=3e-100) unknown [Lotus japonicus];; (*TAIR) AT2G40316.1 (e_value=1e-96) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr2:16836355-16838688 FORWARD LENGTH=276;; (*ITAG) Solyc05g052460.2.1 (e_value=7e-135) genomic_reference:SL2.40ch05 gene_region:61816493-61828800 transcript_region:SL2.40ch05:61816493..61828800- functional_description:"Cation-independent mannose-6-phosphate receptor CI-MPR (AHRD V1 *-*- Q2UUD2_ASPOR); contains Interpro domain(s) IPR018939 Autophagy-related protein 27 "; NbS00002901g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|76; (*GB) gi|224112437|ref|XP_002316189.1| (e_value=6e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40320.1 (e_value=5e-26) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052450.2.1 (e_value=2e-33) genomic_reference:SL2.40ch05 gene_region:61810426-61814671 transcript_region:SL2.40ch05:61810426..61814671- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00029475g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.6|0.8|1|1|5|0|293; (*GB) gi|83283975|gb|ABC01895.1| (e_value=3e-169) transporter-like protein [Solanum tuberosum];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=2e-34) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G75170.2 (e_value=2e-155) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc04g080290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62123183-62125819 transcript_region:SL2.40ch04:62123183..62125819+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00029475g0011.1 protein AED:0.22 eAED:0.41 QI:0|0.33|0|0.75|0.33|0.25|4|63|83 NbS00029475g0008.1 protein AED:0.64 eAED:0.68 QI:0|0|0|0.75|1|1|4|0|59 NbS00010320g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.85|1|0.83|1|7|397|392; (*GB) gi|297737172|emb|CBI26373.3| (e_value=3e-99) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23090.1 (e_value=8e-57) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr3:8214533-8216983 REVERSE LENGTH=338;; (*ITAG) Solyc06g053780.2.1 (e_value=7e-163) genomic_reference:SL2.40ch06 gene_region:33126272-33128573 transcript_region:SL2.40ch06:33126272..33128573+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00020511g0018.1 protein AED:0.07 eAED:0.07 QI:192|0.66|0.25|1|1|1|4|0|136 NbS00020511g0019.1 protein AED:0.26 eAED:0.28 QI:351|0.33|0.5|1|0|0|4|0|230; (*GB) gi|225457085|ref|XP_002280078.1| (e_value=2e-43) PREDICTED: ribonuclease 3 [Vitis vinifera];; (*TAIR) AT1G24450.1 (e_value=2e-38) | Symbols: NFD2 | Ribonuclease III family protein | chr1:8664201-8665077 FORWARD LENGTH=191;; (*ITAG) Solyc03g114120.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:58199564-58200593 transcript_region:SL2.40ch03:58199564..58200593+ go_terms:GO:0006396 functional_description:"Ribonuclease III (AHRD V1 ***- D9Y3M1_9BURK); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00020511g0021.1 protein AED:0.33 eAED:0.39 QI:35|0|0.5|1|0|0.5|2|0|85 NbS00020511g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|193527440|gb|ACF19785.1| (e_value=1e-139) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc03g114260.1.1 (e_value=8e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00020511g0020.1 protein AED:0.03 eAED:0.03 QI:42|0.5|0.8|0.8|0.5|0.4|5|1349|827; (*GB) gi|51989474|gb|AAU21243.1| (e_value=0.0) putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana];; (*SWP) sp|O82504|RDR2_ARATH (e_value=0.0) RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=2 SV=1;; (*TAIR) AT4G11130.1 (e_value=0.0) | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 | chr4:6780522-6784390 FORWARD LENGTH=1133;; (*ITAG) Solyc03g114140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58204901-58210600 transcript_region:SL2.40ch03:58204901..58210600- go_terms:GO:0003676 functional_description:"Rna-dependent RNA polymerase (AHRD V1 ***- B9IEP4_POPTR); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbS00000820g0005.1 protein AED:0.06 eAED:0.06 QI:54|1|0.93|1|0.86|0.87|16|226|548; (*GB) gi|225469630|ref|XP_002264320.1| (e_value=0.0) PREDICTED: EH domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q641Z6|EHD1_RAT (e_value=4e-156) EH domain-containing protein 1 OS=Rattus norvegicus GN=Ehd1 PE=1 SV=1;; (*TAIR) AT4G05520.1 (e_value=0.0) | Symbols: ATEHD2, EHD2 | EPS15 homology domain 2 | chr4:2804522-2807833 FORWARD LENGTH=546;; (*ITAG) Solyc11g012020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4963724-4968395 transcript_region:SL2.40ch11:4963724..4968395+ go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **-* B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00000820g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|357; (*GB) gi|224141167|ref|XP_002323946.1| (e_value=4e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64360.1 (e_value=5e-23) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=422;; (*ITAG) Solyc11g006170.1.1 (e_value=3e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:918328-920277 transcript_region:SL2.40ch11:918328..920277- go_terms:GO:0016021,GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0016021,GO:0031072 NbS00061295g0004.1 protein AED:0.07 eAED:0.07 QI:19|0.85|0.87|1|1|1|8|0|395; (*GB) gi|255558661|ref|XP_002520355.1| (e_value=0.0) serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|Q0WPR4|SCP34_ARATH (e_value=0.0) Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2;; (*TAIR) AT5G23210.3 (e_value=0.0) | Symbols: SCPL34 | serine carboxypeptidase-like 34 | chr5:7810892-7814608 FORWARD LENGTH=459;; (*ITAG) Solyc02g014830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:9830918-9835308 transcript_region:SL2.40ch02:9830918..9835308- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** A6XH04_ARATH); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00017780g0002.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|225424154|ref|XP_002284010.1| (e_value=6e-74) PREDICTED: uncharacterized protein LOC100262828 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=4e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc04g007580.1.1 (e_value=3e-88) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:1262092-1262586 transcript_region:SL2.40ch04:1262092..1262586+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 **-- B7FA06_ORYSJ)"; NbS00017780g0011.1 protein AED:0.32 eAED:0.42 QI:0|0|0|0.8|0.25|0.2|5|0|188; (*GB) gi|76573319|gb|ABA46764.1| (e_value=8e-47) unknown [Solanum tuberosum];; (*SWP) sp|P41129|RL132_BRANA (e_value=2e-37) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.3 (e_value=9e-38) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=8e-49) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00026291g0004.1 protein AED:0.01 eAED:0.03 QI:252|0.33|0.25|1|0|0.25|4|0|749; (*GB) gi|255587116|ref|XP_002534143.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G38970.1 (e_value=0.0) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692;; (*ITAG) Solyc05g056140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64680558-64685370 transcript_region:SL2.40ch05:64680558..64685370- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00013103g0015.1 protein AED:0.15 eAED:0.08 QI:12|1|0.33|1|1|0.66|3|406|171; (*GB) gi|359480018|ref|XP_002273034.2| (e_value=3e-104) PREDICTED: structural maintenance of chromosomes protein 1A-like [Vitis vinifera];; (*SWP) sp|O94383|SMC1_SCHPO (e_value=3e-63) Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm1 PE=1 SV=1;; (*TAIR) AT3G54670.2 (e_value=5e-108) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20240428-20243701 FORWARD LENGTH=453;; (*ITAG) Solyc06g083870.2.1 (e_value=8e-109) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00013103g0021.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.66|3|0|405; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=7e-148) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=2e-149) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=3e-67) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00013103g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.4|1|1|1|5|60|435; (*GB) gi|225438121|ref|XP_002273072.1| (e_value=2e-137) PREDICTED: patellin-4 [Vitis vinifera];; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=2e-92) Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2;; (*TAIR) AT1G30690.2 (e_value=2e-93) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540;; (*ITAG) Solyc09g025230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19259914-19261921 transcript_region:SL2.40ch09:19259914..19261921- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C6HEF9_AJECH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00013103g0018.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|0|2|0|100; (*GB) gi|255582489|ref|XP_002532030.1| (e_value=2e-33) Structural maintenance of chromosome 1 protein, putative [Ricinus communis];; (*TAIR) AT3G54670.2 (e_value=2e-28) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20240428-20243701 FORWARD LENGTH=453;; (*ITAG) Solyc06g083870.2.1 (e_value=2e-49) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00013103g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|356536641|ref|XP_003536845.1| (e_value=5e-26) PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max];; (*SWP) sp|Q9LTC5|ERF98_ARATH (e_value=2e-23) Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1;; (*TAIR) AT3G23230.1 (e_value=1e-24) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139;; (*ITAG) Solyc09g066350.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60379419-60379889 transcript_region:SL2.40ch09:60379419..60379889- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00013103g0022.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|65; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=5e-16) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=1e-17) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*ITAG) Solyc09g072560.2.1 (e_value=3e-24) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00005034g0022.1 protein AED:0.16 eAED:0.19 QI:0|0.86|0.75|1|0.8|0.81|16|11|696; (*GB) gi|193290682|gb|ACF17649.1| (e_value=0.0) putative cytochrome reductase [Capsicum annuum];; (*SWP) sp|P37116|NCPR_VIGRR (e_value=0.0) NADPH--cytochrome P450 reductase OS=Vigna radiata var. radiata PE=1 SV=1;; (*TAIR) AT4G24520.2 (e_value=0.0) | Symbols: ATR1 | P450 reductase 1 | chr4:12663065-12667066 REVERSE LENGTH=688;; (*ITAG) Solyc04g076380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58873950-58880708 transcript_region:SL2.40ch04:58873950..58880708- go_terms:GO:0003958 functional_description:"Cytochrome P450 NADPH-reductase (AHRD V1 **** B3RFK2_PETHY); contains Interpro domain(s) IPR015702 NADPH Cytochrome P450 Reductase "; GO:0003958 NbS00005034g0007.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|71 NbS00005034g0014.1 protein AED:0.60 eAED:0.86 QI:0|0|0|0.5|1|1|2|0|68 NbS00005034g0020.1 protein AED:0.03 eAED:0.03 QI:207|1|1|1|1|1|4|151|595; (*GB) gi|225459073|ref|XP_002283776.1| (e_value=0.0) PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis vinifera];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=1e-103) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT4G30200.3 (e_value=4e-117) | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | chr4:14786852-14790070 REVERSE LENGTH=702;; (*ITAG) Solyc04g076400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58900908-58905317 transcript_region:SL2.40ch04:58900908..58905317+ go_terms:GO:0005515 functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC)"; GO:0005515 NbS00005034g0023.1 protein AED:0.15 eAED:0.15 QI:162|0.75|0.77|1|0.75|0.66|9|446|821; (*GB) gi|225459067|ref|XP_002283768.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248920 [Vitis vinifera];; (*SWP) sp|A5A779|PGTA_PIG (e_value=5e-46) Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1;; (*TAIR) AT4G24490.2 (e_value=0.0) | Symbols: | RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678;; (*ITAG) Solyc04g076430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58916962-58925396 transcript_region:SL2.40ch04:58916962..58925396+ go_terms:GO:0018346 functional_description:"Geranylgeranyl transferase type-2 subunit alpha (AHRD V1 *-*- B5X467_SALSA); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0018346 NbS00005034g0024.1 protein AED:0.16 eAED:0.16 QI:2|0.33|0|0.5|0.66|0.5|4|0|326; (*GB) gi|225459069|ref|XP_002285663.1| (e_value=2e-78) PREDICTED: double-stranded RNA-binding protein 1 [Vitis vinifera];; (*SWP) sp|O04492|DRB1_ARATH (e_value=7e-70) Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1;; (*TAIR) AT1G09700.1 (e_value=5e-71) | Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419;; (*ITAG) Solyc04g076420.2.1 (e_value=8e-106) genomic_reference:SL2.40ch04 gene_region:58909755-58914890 transcript_region:SL2.40ch04:58909755..58914890+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUQ1_BRARA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00005034g0119.1 protein AED:0.18 eAED:0.18 QI:248|1|1|1|1|1|6|137|595 NbS00005034g0118.1 protein AED:0.36 eAED:0.36 QI:0|0|0.33|0.66|0.5|0.33|3|276|238 NbS00005034g0110.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|173 NbS00005034g0123.1 protein AED:0.14 eAED:0.14 QI:0|0.25|0.22|1|0.12|0.22|9|0|1611 NbS00005034g0124.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|170 NbS00005034g0122.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|420 NbS00017318g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0.5|0.5|1|1|2|103|118; (*GB) gi|359476142|ref|XP_002282775.2| (e_value=1e-33) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=5e-14) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=4e-15) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc06g068200.1.1 (e_value=9e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38641511-38643830 transcript_region:SL2.40ch06:38641511..38643830- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00012486g0006.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|224146400|ref|XP_002325994.1| (e_value=4e-40) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g017410.1.1 (e_value=4e-140) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:8332456-8333391 transcript_region:SL2.40ch11:8332456..8333391+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012486g0002.1 protein AED:0.10 eAED:0.10 QI:82|1|0.5|1|0|0.5|2|0|188; (*GB) gi|255571762|ref|XP_002526824.1| (e_value=2e-70) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G09620.1 (e_value=3e-59) | Symbols: | Mitochondrial transcription termination factor family protein | chr4:6077122-6078899 REVERSE LENGTH=212;; (*ITAG) Solyc11g017430.1.1 (e_value=2e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8355180-8357851 transcript_region:SL2.40ch11:8355180..8357851+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YD8_OSTTA); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00012486g0014.1 protein AED:0.14 eAED:0.14 QI:1025|1|1|1|0.44|0.6|10|495|258; (*GB) gi|359480111|ref|XP_003632402.1| (e_value=1e-123) PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Vitis vinifera];; (*SWP) sp|Q9HDW9|PIGL_SCHPO (e_value=9e-44) Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB2B4.01c PE=2 SV=1;; (*TAIR) AT3G58130.2 (e_value=7e-115) | Symbols: | N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein | chr3:21527946-21529654 FORWARD LENGTH=257;; (*ITAG) Solyc08g074360.2.1 (e_value=4e-169) genomic_reference:SL2.40ch08 gene_region:55645966-55651984 transcript_region:SL2.40ch08:55645966..55651984- go_terms:GO:0000225 functional_description:"N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (AHRD V1 ***- B6TKR0_MAIZE); contains Interpro domain(s) IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase "; GO:0000225 NbS00012486g0021.1 protein AED:0.01 eAED:0.01 QI:392|1|1|1|0.75|0.6|5|213|114; (*GB) gi|225460735|ref|XP_002272568.1| (e_value=2e-33) PREDICTED: gibberellin-regulated protein 9 [Vitis vinifera];; (*SWP) sp|Q8GWK5|GASA9_ARATH (e_value=1e-24) Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1;; (*TAIR) AT1G22690.3 (e_value=8e-26) | Symbols: | Gibberellin-regulated family protein | chr1:8027328-8027961 FORWARD LENGTH=119;; (*ITAG) Solyc11g017440.1.1 (e_value=8e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:8383387-8384626 transcript_region:SL2.40ch11:8383387..8384626- functional_description:"Snakin-2 (AHRD V1 ***- B5AGT4_SOLTU); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00012486g0020.1 protein AED:0.13 eAED:0.14 QI:0|0.75|0.44|1|0.87|0.66|9|0|725; (*GB) gi|147814811|emb|CAN72342.1| (e_value=0.0) hypothetical protein VITISV_029506 [Vitis vinifera];; (*TAIR) AT4G09630.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr4:6083860-6087802 FORWARD LENGTH=711;; (*ITAG) Solyc11g017420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8334616-8349849 transcript_region:SL2.40ch11:8334616..8349849- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00012486g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|192; (*ITAG) Solyc11g017390.1.1 (e_value=3e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:8315512-8315970 transcript_region:SL2.40ch11:8315512..8315970+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046184g0007.1 protein AED:0.24 eAED:0.26 QI:172|0.53|0.62|0.87|0.4|0.5|16|0|844; (*GB) gi|356527443|ref|XP_003532320.1| (e_value=5e-168) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-50) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G05820.1 (e_value=6e-148) | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDASE-LIKE 5 | chr1:1749776-1753767 FORWARD LENGTH=536;; (*ITAG) Solyc12g098670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64437938-64445800 transcript_region:SL2.40ch12:64437938..64445800+ go_terms:GO:0016021 functional_description:"Signal peptide peptidase (AHRD V1 ***- Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00046184g0010.1 protein AED:0.36 eAED:0.38 QI:0|0|0.5|1|0|0|2|0|71; (*GB) gi|19423862|gb|AAL88710.1|AF484696_1 (e_value=5e-27) 1-cys peroxiredoxin [Xerophyta viscosa];; (*SWP) sp|P52572|REHY_HORVU (e_value=5e-26) 1-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER1 PE=2 SV=1;; (*TAIR) AT1G48130.1 (e_value=2e-26) | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780610-17781500 FORWARD LENGTH=216;; (*ITAG) Solyc03g096040.2.1 (e_value=1e-36) genomic_reference:SL2.40ch03 gene_region:51304230-51305908 transcript_region:SL2.40ch03:51304230..51305908+ go_terms:GO:0008379,GO:0004602 functional_description:"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity (AHRD V1 **** C4QX37_PICPG); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379,GO:0004602 NbS00046184g0013.1 protein AED:0.48 eAED:0.60 QI:0|0|0|1|0|0|2|0|129; (*ITAG) Solyc09g098210.1.1 (e_value=8e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67341278-67344165 transcript_region:SL2.40ch09:67341278..67344165+ go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00046184g0008.1 protein AED:0.29 eAED:0.28 QI:0|0|0|1|0|0|2|0|79 NbS00046184g0009.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|3|0|70; (*GB) gi|388506576|gb|AFK41354.1| (e_value=3e-27) unknown [Lotus japonicus];; (*SWP) sp|Q6E2Z6|REHY_MEDTR (e_value=5e-28) 1-Cys peroxiredoxin OS=Medicago truncatula PE=2 SV=1;; (*TAIR) AT1G48130.1 (e_value=3e-22) | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780610-17781500 FORWARD LENGTH=216;; (*ITAG) Solyc03g096040.2.1 (e_value=1e-29) genomic_reference:SL2.40ch03 gene_region:51304230-51305908 transcript_region:SL2.40ch03:51304230..51305908+ go_terms:GO:0008379,GO:0004602 functional_description:"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity (AHRD V1 **** C4QX37_PICPG); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379,GO:0004602 NbS00010043g0007.1 protein AED:0.04 eAED:0.04 QI:325|1|1|1|1|1|3|288|391; (*GB) gi|225444537|ref|XP_002275370.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253669 [Vitis vinifera];; (*TAIR) AT2G34510.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF642 | chr2:14544114-14546732 REVERSE LENGTH=401;; (*ITAG) Solyc02g070540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34865061-34867820 transcript_region:SL2.40ch02:34865061..34867820+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00055541g0010.1 protein AED:0.33 eAED:0.33 QI:0|1|0.75|1|1|1|4|0|276; (*GB) gi|30681121|ref|NP_192696.3| (e_value=5e-133) SNARE associated Golgi protein [Arabidopsis thaliana];; (*SWP) sp|Q8L586|Y4958_ARATH (e_value=2e-134) Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1;; (*TAIR) AT4G09580.1 (e_value=1e-135) | Symbols: | SNARE associated Golgi protein family | chr4:6052721-6054313 REVERSE LENGTH=287;; (*ITAG) Solyc06g065400.2.1 (e_value=2e-156) genomic_reference:SL2.40ch06 gene_region:37200368-37205677 transcript_region:SL2.40ch06:37200368..37205677- functional_description:"Transmembrane protein 41B (AHRD V1 **-- TM41B_XENLA); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00055541g0002.1 protein AED:0.35 eAED:0.36 QI:0|0.66|0.75|1|1|1|4|255|187; (*GB) gi|255571748|ref|XP_002526817.1| (e_value=1e-29) 50S ribosomal protein L21, putative [Ricinus communis];; (*SWP) sp|P51412|RK21_ARATH (e_value=1e-26) 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1;; (*TAIR) AT1G35680.1 (e_value=8e-28) | Symbols: | Ribosomal protein L21 | chr1:13208777-13210246 FORWARD LENGTH=220;; (*ITAG) Solyc06g065390.2.1 (e_value=3e-62) genomic_reference:SL2.40ch06 gene_region:37196707-37200050 transcript_region:SL2.40ch06:37196707..37200050+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6U3Z0_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00040601g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0|1|1|1|4|0|289; (*GB) gi|350534744|ref|NP_001234413.1| (e_value=0.0) Aqp2 protein [Solanum lycopersicum];; (*SWP) sp|Q06611|PIP12_ARATH (e_value=2e-177) Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1;; (*TAIR) AT2G45960.1 (e_value=2e-178) | Symbols: PIP1B, TMP-A, ATHH2, PIP1;2 | plasma membrane intrinsic protein 1B | chr2:18910450-18911703 FORWARD LENGTH=286;; (*ITAG) Solyc01g094690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77897514-77900268 transcript_region:SL2.40ch01:77897514..77900268+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- Q40266_MESCR); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00040601g0021.1 protein AED:0.23 eAED:0.23 QI:253|0.90|0.83|1|0.90|0.91|12|635|601; (*GB) gi|225454266|ref|XP_002275090.1| (e_value=0.0) PREDICTED: probable anion transporter 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8GX78|ANTR2_ARATH (e_value=0.0) Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1;; (*TAIR) AT4G00370.1 (e_value=0.0) | Symbols: ANTR2, PHT4;4 | Major facilitator superfamily protein | chr4:163153-166111 REVERSE LENGTH=541;; (*ITAG) Solyc01g094720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77913332-77919557 transcript_region:SL2.40ch01:77913332..77919557+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00040601g0015.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|541; (*GB) gi|308513539|gb|ADO33168.1| (e_value=0.0) putative glycerol-3-phosphate O-acyltransferase [Echium pitardii];; (*SWP) sp|Q9LMM0|GPAT4_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=GPAT4 PE=1 SV=1;; (*TAIR) AT1G01610.1 (e_value=0.0) | Symbols: ATGPAT4, GPAT4 | glycerol-3-phosphate acyltransferase 4 | chr1:221950-224255 REVERSE LENGTH=503;; (*ITAG) Solyc01g094700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77905683-77908620 transcript_region:SL2.40ch01:77905683..77908620+ go_terms:GO:0004366,GO:0003841 functional_description:"Glycerol-3-phosphate acyltransferase 4 (AHRD V1 **** D7KQ54_ARALY); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00040601g0017.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.8|1|0.5|0.4|5|296|552; (*GB) gi|225456232|ref|XP_002283101.1| (e_value=0.0) PREDICTED: origin recognition complex subunit 5-like [Vitis vinifera];; (*SWP) sp|Q9WUV0|ORC5_MOUSE (e_value=1e-31) Origin recognition complex subunit 5 OS=Mus musculus GN=Orc5 PE=2 SV=1;; (*TAIR) AT4G29910.1 (e_value=0.0) | Symbols: ORC5, ATORC5 | origin recognition complex protein 5 | chr4:14628154-14630055 REVERSE LENGTH=534;; (*ITAG) Solyc01g094760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77938693-77941753 transcript_region:SL2.40ch01:77938693..77941753- go_terms:GO:0042802 functional_description:"Origin recognition complex 5 subunit (AHRD V1 ***- Q6EWX0_ARATH)"; GO:0042802 NbS00040601g0002.1 protein AED:0.13 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|535; (*GB) gi|225454268|ref|XP_002275115.1| (e_value=0.0) PREDICTED: cytochrome P450 86A2 [Vitis vinifera];; (*SWP) sp|O23066|C86A2_ARATH (e_value=0.0) Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1;; (*TAIR) AT2G45970.1 (e_value=0.0) | Symbols: CYP86A8, LCR | cytochrome P450, family 86, subfamily A, polypeptide 8 | chr2:18912548-18914161 REVERSE LENGTH=537;; (*ITAG) Solyc01g094750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77933793-77935620 transcript_region:SL2.40ch01:77933793..77935620- go_terms:GO:0008393,GO:0019825 functional_description:"Cytochrome P450"; GO:0008393,GO:0019825 NbS00040601g0018.1 protein AED:0.40 eAED:0.42 QI:0|0.5|0.33|1|0.5|0.33|3|412|304; (*GB) gi|359489625|ref|XP_002275132.2| (e_value=3e-97) PREDICTED: uncharacterized protein LOC100244782 [Vitis vinifera];; (*TAIR) AT2G45980.1 (e_value=3e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18917680-18918569 REVERSE LENGTH=256;; (*ITAG) Solyc01g094770.2.1 (e_value=9e-102) genomic_reference:SL2.40ch01 gene_region:77943220-77947201 transcript_region:SL2.40ch01:77943220..77947201- functional_description:"Unknown Protein (AHRD V1)"; NbS00009689g0001.1 protein AED:0.25 eAED:0.43 QI:0|0|0|1|0|0|2|0|92 NbS00010279g0003.1 protein AED:0.11 eAED:0.11 QI:237|0.33|0.5|0.75|0|0.5|4|242|117; (*GB) gi|296086695|emb|CBI32330.3| (e_value=2e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|O35900|LSM2_MOUSE (e_value=6e-43) U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1;; (*TAIR) AT1G03330.1 (e_value=9e-60) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:818161-819297 REVERSE LENGTH=93;; (*ITAG) Solyc09g072970.2.1 (e_value=2e-61) genomic_reference:SL2.40ch09 gene_region:61133957-61139157 transcript_region:SL2.40ch09:61133957..61139157- go_terms:GO:0019901 functional_description:"U6 snRNA-associated Sm-like protein LSm2 (AHRD V1 **-- B9EPQ0_SALSA); contains Interpro domain(s) IPR016654 U6 snRNA-associated Sm-like protein LSm2 "; GO:0019901 NbS00009554g0006.1 protein AED:0.16 eAED:0.16 QI:55|1|1|1|1|1|3|263|115; (*GB) gi|225450753|ref|XP_002283567.1| (e_value=2e-49) PREDICTED: uncharacterized protein LOC100256314 isoform 1 [Vitis vinifera];; (*TAIR) AT1G56260.1 (e_value=3e-38) | Symbols: | unknown protein; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21064647-21065577 REVERSE LENGTH=127;; (*ITAG) Solyc01g065710.2.1 (e_value=7e-66) genomic_reference:SL2.40ch01 gene_region:64687653-64690458 transcript_region:SL2.40ch01:64687653..64690458- functional_description:"Unknown Protein (AHRD V1)"; NbS00009554g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.88|0.94|19|749|1033; (*GB) gi|225431806|ref|XP_002272864.1| (e_value=0.0) PREDICTED: phospholipase D p1-like [Vitis vinifera];; (*SWP) sp|Q9LRZ5|PLDP1_ARATH (e_value=0.0) Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1;; (*TAIR) AT3G16785.1 (e_value=0.0) | Symbols: PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 | phospholipase D P1 | chr3:5711329-5718696 FORWARD LENGTH=1096;; (*ITAG) Solyc01g065720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64704413-64723926 transcript_region:SL2.40ch01:64704413..64723926- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00026797g0001.1 protein AED:0.19 eAED:0.20 QI:0|1|0.6|1|1|1|5|0|439; (*GB) gi|317106666|dbj|BAJ53169.1| (e_value=0.0) JHL18I08.3 [Jatropha curcas];; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=4e-127) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=0.0) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc04g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62521368-62529607 transcript_region:SL2.40ch04:62521368..62529607- go_terms:GO:0006508,GO:0016020,GO:0008234,GO:0055114 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0016020,GO:0008234,GO:0055114 NbS00026797g0006.1 protein AED:0.47 eAED:0.48 QI:0|0|0.5|1|0|0.5|2|260|121; (*GB) gi|225458145|ref|XP_002280558.1| (e_value=3e-70) PREDICTED: lon protease 2 [Vitis vinifera];; (*TAIR) AT1G75460.1 (e_value=8e-64) | Symbols: | ATP-dependent protease La (LON) domain protein | chr1:28327986-28328822 FORWARD LENGTH=278; NbS00037066g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|339; (*GB) gi|29825611|gb|AAO92303.1| (e_value=0.0) gibberellin 2-oxidase 1 [Nicotiana sylvestris];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=1e-146) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.1 (e_value=9e-148) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11306601 FORWARD LENGTH=338;; (*ITAG) Solyc02g080120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39009892-39014517 transcript_region:SL2.40ch02:39009892..39014517+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00037066g0007.1 protein AED:0.53 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|82 NbS00037066g0008.1 protein AED:0.34 eAED:0.69 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|187372954|gb|ACD03211.1| (e_value=1e-20) xyloglucan endotransglucosylase/hydrolase 1 [Actinidia eriantha];; (*SWP) sp|Q8L9A9|XTH8_ARATH (e_value=1e-18) Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2;; (*TAIR) AT1G11545.1 (e_value=9e-20) | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase 8 | chr1:3878689-3880286 REVERSE LENGTH=305;; (*ITAG) Solyc03g031800.2.1 (e_value=8e-24) genomic_reference:SL2.40ch03 gene_region:8562793-8564971 transcript_region:SL2.40ch03:8562793..8564971+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** C0IRG0_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00021450g0001.1 protein AED:0.34 eAED:0.47 QI:0|0|0|1|1|1|2|0|163; (*ITAG) Solyc02g091570.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47409077-47410201 transcript_region:SL2.40ch02:47409077..47410201- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00058989g0005.1 protein AED:0.06 eAED:0.08 QI:198|0.8|0.66|1|0.8|1|6|479|427; (*GB) gi|283837099|emb|CBH19894.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q12834|CDC20_HUMAN (e_value=5e-86) Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2;; (*TAIR) AT4G33270.1 (e_value=2e-165) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc08g005420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:313072-316046 transcript_region:SL2.40ch08:313072..316046+ go_terms:GO:0004871 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004871 NbS00058989g0004.1 protein AED:0.35 eAED:0.36 QI:26|1|0.8|1|0.75|0.4|5|241|350; (*GB) gi|297737265|emb|CBI26466.3| (e_value=6e-96) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13960.1 (e_value=9e-47) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc08g005430.2.1 (e_value=5e-164) genomic_reference:SL2.40ch08 gene_region:317215-320529 transcript_region:SL2.40ch08:317215..320529+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 4 (AHRD V1 **-- Q6ZIK5_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00036196g0001.1 protein AED:0.00 eAED:0.01 QI:85|1|0.33|1|1|1|3|0|996; (*GB) gi|225462943|ref|XP_002267746.1| (e_value=0.0) PREDICTED: protein argonaute 7-like [Vitis vinifera];; (*SWP) sp|Q9C793|AGO7_ARATH (e_value=0.0) Protein argonaute 7 OS=Arabidopsis thaliana GN=AGO7 PE=2 SV=1;; (*TAIR) AT1G69440.1 (e_value=0.0) | Symbols: AGO7, ZIP | Argonaute family protein | chr1:26101565-26105016 REVERSE LENGTH=990;; (*ITAG) Solyc01g010970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6612318-6616335 transcript_region:SL2.40ch01:6612318..6616335+ go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00007539g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|250; (*GB) gi|224080313|ref|XP_002306093.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49330.1 (e_value=1e-53) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:18250043-18251038 FORWARD LENGTH=331;; (*ITAG) Solyc08g081600.1.1 (e_value=3e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61766628-61767263 transcript_region:SL2.40ch08:61766628..61767263+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013192g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.25|1|1|4|0|131; (*GB) gi|255541538|ref|XP_002511833.1| (e_value=6e-32) Remorin, putative [Ricinus communis];; (*SWP) sp|Q9M2D8|Y3126_ARATH (e_value=1e-24) Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1;; (*TAIR) AT3G61260.1 (e_value=9e-26) | Symbols: | Remorin family protein | chr3:22675403-22676701 REVERSE LENGTH=212;; (*ITAG) Solyc05g048820.2.1 (e_value=9e-51) genomic_reference:SL2.40ch05 gene_region:58663878-58666484 transcript_region:SL2.40ch05:58663878..58666484+ go_terms:GO:0005515,GO:0003677 functional_description:"Remorin 2 (AHRD V1 ***- Q9XEX9_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0005515,GO:0003677 NbS00013192g0007.1 protein AED:0.01 eAED:0.01 QI:92|1|1|1|0.5|0.66|3|188|298; (*GB) gi|224064017|ref|XP_002301350.1| (e_value=2e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=5e-64) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT3G61250.1 (e_value=4e-115) | Symbols: AtMYB17, MYB17 | myb domain protein 17 | chr3:22671306-22672551 FORWARD LENGTH=299;; (*ITAG) Solyc05g048830.2.1 (e_value=6e-166) genomic_reference:SL2.40ch05 gene_region:58666713-58668935 transcript_region:SL2.40ch05:58666713..58668935- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00007290g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.44|0.4|1|0.33|0.3|10|0|734; (*GB) gi|225424574|ref|XP_002282104.1| (e_value=6e-132) PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-49) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT3G26115.1 (e_value=2e-126) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr3:9542301-9544246 FORWARD LENGTH=427;; (*ITAG) Solyc01g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2920931-2926342 transcript_region:SL2.40ch01:2920931..2926342+ go_terms:GO:0008152 functional_description:"Genomic DNA chromosome 3 P1 clone MJL14 (AHRD V1 **-- Q9LJG2_ARATH); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0008152 NbS00007290g0011.1 protein AED:0.30 eAED:0.32 QI:0|0.66|0.57|0.85|0.33|0.57|7|0|414; (*GB) gi|225424574|ref|XP_002282104.1| (e_value=3e-150) PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera];; (*TAIR) AT3G26115.1 (e_value=8e-152) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr3:9542301-9544246 FORWARD LENGTH=427;; (*ITAG) Solyc01g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2920931-2926342 transcript_region:SL2.40ch01:2920931..2926342+ go_terms:GO:0008152 functional_description:"Genomic DNA chromosome 3 P1 clone MJL14 (AHRD V1 **-- Q9LJG2_ARATH); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0008152 NbS00007290g0013.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|0|0|2|0|108; (*GB) gi|224107725|ref|XP_002314578.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT3G26115.1 (e_value=1e-29) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr3:9542301-9544246 FORWARD LENGTH=427;; (*ITAG) Solyc01g008900.2.1 (e_value=1e-54) genomic_reference:SL2.40ch01 gene_region:2920931-2926342 transcript_region:SL2.40ch01:2920931..2926342+ go_terms:GO:0008152 functional_description:"Genomic DNA chromosome 3 P1 clone MJL14 (AHRD V1 **-- Q9LJG2_ARATH); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0008152 NbS00007290g0012.1 protein AED:0.71 eAED:1.00 QI:88|0|0|1|0|0|2|0|66; (*GB) gi|255569484|ref|XP_002525709.1| (e_value=1e-17) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q42699|METE_CATRO (e_value=2e-18) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=1e-17) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=6e-21) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00003344g0007.1 protein AED:0.24 eAED:0.31 QI:0|0|0|1|0|0|4|0|153; (*GB) gi|255587656|ref|XP_002534344.1| (e_value=7e-61) 40S ribosomal protein S8, putative [Ricinus communis];; (*SWP) sp|P49199|RS8_ORYSJ (e_value=4e-60) 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=2e-55) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g007570.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:1570793-1573532 transcript_region:SL2.40ch06:1570793..1573532+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00018446g0025.1 protein AED:0.29 eAED:0.29 QI:223|1|0.92|1|0.75|0.61|13|512|450; (*GB) gi|70663512|emb|CAJ15155.1| (e_value=0.0) sialyltransferase-like protein [Solanum tuberosum];; (*TAIR) AT1G08660.1 (e_value=0.0) | Symbols: MGP2 | MALE GAMETOPHYTE DEFECTIVE 2 | chr1:2757116-2759677 REVERSE LENGTH=474;; (*ITAG) Solyc02g094500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49581916-49597120 transcript_region:SL2.40ch02:49581916..49597120- go_terms:GO:0030173 functional_description:"Alpha-2 8-sialyltransferase 8B 1 (AHRD V1 *-*- B2R9U8_HUMAN); contains Interpro domain(s) IPR001675 Glycosyl transferase, family 29 "; GO:0030173 NbS00018446g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.57|1|1|1|7|0|388; (*GB) gi|224060325|ref|XP_002300143.1| (e_value=0.0) mitochondrial phosphate carrier protein [Populus trichocarpa];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=2e-108) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=0.0) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc02g094470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49555143-49558213 transcript_region:SL2.40ch02:49555143..49558213- go_terms:GO:0005315,GO:0015320 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315,GO:0015320 NbS00018446g0005.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|225451587|ref|XP_002275554.1| (e_value=5e-91) PREDICTED: uncharacterized protein LOC100248121 isoform 1 [Vitis vinifera];; (*TAIR) AT3G26780.1 (e_value=5e-75) | Symbols: | Phosphoglycerate mutase family protein | chr3:9848747-9850277 FORWARD LENGTH=399;; (*ITAG) Solyc02g094480.2.1 (e_value=3e-128) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00018446g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|1|1|2|0|212; (*GB) gi|359488559|ref|XP_002275581.2| (e_value=1e-87) PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=2e-70) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=1e-71) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc02g094480.2.1 (e_value=9e-115) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00018446g0008.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|224060327|ref|XP_002300144.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=1e-43) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=1e-44) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc02g094480.2.1 (e_value=4e-55) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00018446g0006.1 protein AED:0.62 eAED:0.74 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|296082284|emb|CBI21289.3| (e_value=5e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=1e-20) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=8e-22) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc02g094480.2.1 (e_value=3e-29) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00018446g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|356571628|ref|XP_003553978.1| (e_value=9e-66) PREDICTED: uncharacterized protein LOC100816092 [Glycine max];; (*TAIR) AT2G31410.1 (e_value=1e-59) | Symbols: | unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). | chr2:13392220-13392819 REVERSE LENGTH=199;; (*ITAG) Solyc02g094490.2.1 (e_value=2e-89) genomic_reference:SL2.40ch02 gene_region:49580106-49581853 transcript_region:SL2.40ch02:49580106..49581853+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018446g0028.1 protein AED:0.35 eAED:0.40 QI:0|0.71|0.62|0.87|0.71|0.62|8|0|291; (*GB) gi|357508363|ref|XP_003624470.1| (e_value=6e-55) B3 domain-containing protein [Medicago truncatula];; (*SWP) sp|Q9LW31|FUS3_ARATH (e_value=3e-48) B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2;; (*TAIR) AT3G26790.1 (e_value=2e-49) | Symbols: FUS3 | AP2/B3-like transcriptional factor family protein | chr3:9854025-9855748 REVERSE LENGTH=313;; (*ITAG) Solyc02g094460.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49552749-49554537 transcript_region:SL2.40ch02:49552749..49554537+ go_terms:GO:0016563,GO:0003700 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HIZ2_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0016563,GO:0003700 NbS00014646g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.81|0.70|1|0.87|0.76|17|0|1400; (*GB) gi|296081949|emb|CBI20954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25730.2 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54307990-54322617 transcript_region:SL2.40ch08:54307990..54322617- functional_description:"Zinc finger-like (AHRD V1 ***- Q5ZD36_ORYSJ)"; NbS00014646g0010.1 protein AED:0.16 eAED:0.16 QI:73|0.86|0.62|0.93|0.66|0.62|16|0|1016; (*GB) gi|296081949|emb|CBI20954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q551A3|Y6689_DICDI (e_value=2e-19) Protein DDB_G0276689 OS=Dictyostelium discoideum GN=DDB_G0276689 PE=4 SV=2;; (*TAIR) AT2G25730.2 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbS00039006g0007.1 protein AED:0.07 eAED:0.07 QI:133|0.6|0.66|1|0.8|0.83|6|0|228; (*GB) gi|225425744|ref|XP_002276441.1| (e_value=5e-94) PREDICTED: probable peptidyl-prolyl cis-trans isomerase isoform 1 [Vitis vinifera];; (*SWP) sp|Q8G0J9|PPI1_BRUSU (e_value=1e-17) Probable peptidyl-prolyl cis-trans isomerase OS=Brucella suis biovar 1 (strain 1330) GN=ppi PE=3 SV=1;; (*TAIR) AT1G26940.1 (e_value=1e-88) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9343193-9344962 FORWARD LENGTH=226;; (*ITAG) Solyc01g010590.2.1 (e_value=1e-111) genomic_reference:SL2.40ch01 gene_region:5594931-5600715 transcript_region:SL2.40ch01:5594931..5600715+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase A (AHRD V1 ***- B6TSE8_MAIZE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00023179g0005.1 protein AED:0.24 eAED:0.24 QI:235|1|0.81|1|0.7|0.81|11|0|626; (*GB) gi|47076396|dbj|BAD18102.1| (e_value=0.0) leucine-rich repeat receptor-like kinase [Ipomoea batatas];; (*SWP) sp|Q93ZS4|NIK3_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1;; (*TAIR) AT1G60800.1 (e_value=0.0) | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383601-22386931 REVERSE LENGTH=632;; (*ITAG) Solyc04g039730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30322309-30327080 transcript_region:SL2.40ch04:30322309..30327080+ go_terms:GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0016301 NbS00023179g0006.1 protein AED:0.19 eAED:0.19 QI:277|0.88|1|1|0.88|0.9|10|574|390; (*GB) gi|225470599|ref|XP_002274463.1| (e_value=0.0) PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q9BXS5|AP1M1_HUMAN (e_value=2e-176) AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3;; (*TAIR) AT1G60780.1 (e_value=0.0) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc05g013340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6428106-6437810 transcript_region:SL2.40ch05:6428106..6437810- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu-1 (AHRD V1 ***- B5X228_SALSA); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00006993g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|70; (*GB) gi|57013934|ref|YP_173407.1| (e_value=6e-44) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00004492g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.2|0.16|0.83|1|1|6|0|626; (*GB) gi|255542420|ref|XP_002512273.1| (e_value=6e-54) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc01g102850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83299072-83303254 transcript_region:SL2.40ch01:83299072..83303254+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00004492g0008.1 protein AED:0.26 eAED:0.37 QI:73|0|0|0.5|0.66|0.25|4|0|273; (*ITAG) Solyc01g109730.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046753g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|110456732|gb|ABG74835.1| (e_value=8e-78) PSII 47 kDa protein [Jasminum subhumile];; (*SWP) sp|A7Y3H4|PSBB_IPOPU (e_value=2e-77) Photosystem II CP47 chlorophyll apoprotein OS=Ipomoea purpurea GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=2e-77) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=3e-78) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00046753g0004.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|105; (*GB) gi|305671892|gb|ADM63297.1| (e_value=2e-25) photosystem II cp47 protein [Delarbrea harmsii];; (*SWP) sp|A7Y3H4|PSBB_IPOPU (e_value=5e-26) Photosystem II CP47 chlorophyll apoprotein OS=Ipomoea purpurea GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=3e-26) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=5e-27) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00003489g0110.1 protein AED:0.30 eAED:0.36 QI:0|0|0.25|1|0|0.5|4|0|328 NbS00003489g0111.1 protein AED:0.03 eAED:0.08 QI:0|0.87|0.58|1|0.93|0.94|17|108|985 NbS00007141g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|1|0|0|4|0|246; (*GB) gi|227809538|gb|ACP40988.1| (e_value=1e-141) cytokinin oxidase/dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q67YU0|CKX5_ARATH (e_value=4e-113) Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1;; (*TAIR) AT1G75450.2 (e_value=2e-114) | Symbols: CKX5 | cytokinin oxidase 5 | chr1:28315248-28318052 REVERSE LENGTH=537;; (*ITAG) Solyc04g080820.2.1 (e_value=3e-139) genomic_reference:SL2.40ch04 gene_region:62485178-62490693 transcript_region:SL2.40ch04:62485178..62490693- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase (AHRD V1 **** C3VPM7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00007141g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.25|1|0.33|0.25|4|344|810; (*GB) gi|359492699|ref|XP_002280968.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera];; (*SWP) sp|Q9FXH1|PPR52_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1;; (*TAIR) AT1G19720.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6819926-6822610 REVERSE LENGTH=894;; (*ITAG) Solyc04g080830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62501648-62505187 transcript_region:SL2.40ch04:62501648..62505187- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00029252g0013.1 protein AED:0.26 eAED:0.26 QI:280|1|1|1|0.55|0.6|10|716|224; (*GB) gi|225462011|ref|XP_002272971.1| (e_value=2e-147) PREDICTED: calcineurin B-like protein 02 [Vitis vinifera];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=3e-145) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT5G55990.1 (e_value=5e-143) | Symbols: CBL2, ATCBL2 | calcineurin B-like protein 2 | chr5:22672189-22673579 FORWARD LENGTH=226;; (*ITAG) Solyc12g015870.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5860247-5866106 transcript_region:SL2.40ch12:5860247..5866106+ go_terms:GO:0005509 functional_description:"Calcineurin B-like protein 02 (AHRD V1 ***- A5BYS8_VITVI); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00029252g0012.1 protein AED:0.33 eAED:0.33 QI:430|1|0.91|1|1|1|12|0|342; (*GB) gi|1491641|emb|CAA59170.1| (e_value=0.0) dimethylallyltransferase [Capsicum annuum];; (*SWP) sp|P49351|FPPS1_LUPAL (e_value=0.0) Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1;; (*TAIR) AT4G17190.1 (e_value=0.0) | Symbols: FPS2 | farnesyl diphosphate synthase 2 | chr4:9648743-9650865 REVERSE LENGTH=342;; (*ITAG) Solyc12g015860.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5832999-5836983 transcript_region:SL2.40ch12:5832999..5836983- go_terms:GO:0008299 functional_description:"Farnesyl pyrophosphate synthase (AHRD V1 ***- O65004_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0008299 NbS00029252g0014.1 protein AED:0.52 eAED:0.59 QI:0|0.33|0.5|0.75|0.33|0.25|4|57|71; (*GB) gi|255537695|ref|XP_002509914.1| (e_value=2e-17) aldose 1-epimerase, putative [Ricinus communis];; (*TAIR) AT4G23730.1 (e_value=4e-17) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00053820g0002.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|3|0|236; (*ITAG) Solyc11g005230.1.1 (e_value=1e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:193140-194767 transcript_region:SL2.40ch11:193140..194767- functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 *--- D7MSG2_ARALY); contains Interpro domain(s) IPR012942 SRR1 "; NbS00017099g0007.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0.5|0.33|3|0|444; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=7e-87) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=5e-88) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00017099g0006.1 protein AED:0.41 eAED:0.44 QI:208|1|0.66|1|0.5|0.33|3|0|88; (*GB) gi|18076679|emb|CAC84774.1| (e_value=2e-36) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=6e-15) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=5e-16) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=5e-35) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00061153g0003.1 protein AED:0.09 eAED:0.08 QI:149|0.85|0.75|1|0.71|0.5|8|669|249; (*GB) gi|445613|prf||1909359B (e_value=4e-158) ribosomal protein L7;; (*SWP) sp|Q9LHP1|RL74_ARATH (e_value=8e-148) 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1;; (*TAIR) AT2G44120.2 (e_value=6e-149) | Symbols: | Ribosomal protein L30/L7 family protein | chr2:18249227-18250417 REVERSE LENGTH=247;; (*ITAG) Solyc08g075090.2.1 (e_value=1e-166) genomic_reference:SL2.40ch08 gene_region:56410976-56415969 transcript_region:SL2.40ch08:56410976..56415969- go_terms:GO:0005840,GO:0015934,GO:0005634,GO:0045449 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0005840,GO:0015934,GO:0005634,GO:0045449 NbS00001139g0012.1 protein AED:0.12 eAED:0.15 QI:241|0.77|0.8|1|0.77|0.7|10|176|599; (*GB) gi|356495992|ref|XP_003516854.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like [Glycine max];; (*SWP) sp|Q9S713|STT7_ARATH (e_value=0.0) Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1;; (*TAIR) AT1G68830.1 (e_value=0.0) | Symbols: STN7 | STT7 homolog STN7 | chr1:25872654-25875473 REVERSE LENGTH=562;; (*ITAG) Solyc12g021280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15120633-15133486 transcript_region:SL2.40ch12:15120633..15133486- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001139g0006.1 protein AED:0.31 eAED:0.39 QI:0|0|0|1|1|1|3|0|176 NbS00001139g0018.1 protein AED:0.11 eAED:0.11 QI:261|0.66|0.5|0.75|1|1|4|0|109; (*GB) gi|297737854|emb|CBI27055.3| (e_value=2e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G25540.1 (e_value=5e-47) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE LENGTH=836;; (*ITAG) Solyc12g070100.1.1 (e_value=8e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00001139g0017.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|95 NbS00047429g0004.1 protein AED:0.11 eAED:0.11 QI:85|1|1|1|0.88|0.9|10|212|327; (*GB) gi|15234031|ref|NP_192713.1| (e_value=0.0) Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|A6QP05|DHR12_BOVIN (e_value=1e-78) Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1;; (*TAIR) AT4G09750.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:6146770-6148698 FORWARD LENGTH=322;; (*ITAG) Solyc00g009140.2.1 (e_value=5e-99) genomic_reference:SL2.40ch00 gene_region:8835428-8837855 transcript_region:SL2.40ch00:8835428..8837855+ go_terms:GO:0008152 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A4A816_9GAMM); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR "; GO:0008152 NbS00045064g0013.1 protein AED:0.43 eAED:0.43 QI:246|1|0.5|1|0|0.5|2|0|114 NbS00045064g0008.1 protein AED:0.55 eAED:0.52 QI:0|0|0|0.8|1|1|5|0|265; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00045064g0009.1 protein AED:0.00 eAED:0.00 QI:145|1|1|1|0|0|2|123|80; (*GB) gi|224088244|ref|XP_002308387.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GL10|F108C_XENTR (e_value=2e-17) Abhydrolase domain-containing protein FAM108C1 OS=Xenopus tropicalis GN=fam108c1 PE=2 SV=1;; (*TAIR) AT4G31020.1 (e_value=4e-41) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:15108832-15110079 REVERSE LENGTH=294;; (*ITAG) Solyc07g005130.2.1 (e_value=2e-45) genomic_reference:SL2.40ch07 gene_region:145544-151215 transcript_region:SL2.40ch07:145544..151215+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00046576g0003.1 protein AED:0.00 eAED:0.03 QI:0|1|0.5|1|0|0|2|0|249; (*GB) gi|255569462|ref|XP_002525698.1| (e_value=3e-75) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SRV3|LBD20_ARATH (e_value=3e-69) LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1;; (*TAIR) AT3G03760.1 (e_value=2e-70) | Symbols: LBD20 | LOB domain-containing protein 20 | chr3:943632-944673 FORWARD LENGTH=273;; (*ITAG) Solyc01g098220.1.1 (e_value=6e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80564577-80565953 transcript_region:SL2.40ch01:80564577..80565953- functional_description:"LOB domain protein 20 (AHRD V1 *-*- D7L194_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00040450g0004.1 protein AED:0.42 eAED:0.42 QI:0|1|0.75|1|0.85|0.87|8|0|240; (*GB) gi|7649667|emb|CAB88874.1| (e_value=7e-162) phosphatidylinositol 4-kinase [Solanum tuberosum];; (*SWP) sp|Q9FMJ0|P4KB1_ARATH (e_value=2e-154) Phosphatidylinositol 4-kinase beta 1 OS=Arabidopsis thaliana GN=PI4KBETA1 PE=1 SV=1;; (*TAIR) AT5G64070.1 (e_value=1e-155) | Symbols: PI-4KBETA1, PI4KBETA1 | phosphatidylinositol 4-OH kinase beta1 | chr5:25637492-25643902 REVERSE LENGTH=1121;; (*ITAG) Solyc11g005910.1.1 (e_value=1e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:718677-739662 transcript_region:SL2.40ch11:718677..739662+ go_terms:GO:0005515,GO:0004430 functional_description:"Phosphatidylinositol kinase (AHRD V1 **** B9V0T3_ORYRU); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0005515,GO:0004430 NbC24642789g0002.1 protein AED:0.41 eAED:0.87 QI:0|0|0|1|1|1|3|0|98 NbS00013990g0005.1 protein AED:0.32 eAED:0.32 QI:285|1|1|1|1|1|11|316|454; (*GB) gi|225423820|ref|XP_002277990.1| (e_value=0.0) PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 [Vitis vinifera];; (*SWP) sp|Q8VYP9|ICML1_ARATH (e_value=0.0) Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Arabidopsis thaliana GN=ICMEL1 PE=2 SV=1;; (*TAIR) AT1G26120.1 (e_value=0.0) | Symbols: ICME-LIKE1 | alpha/beta-Hydrolases superfamily protein | chr1:9028656-9031402 REVERSE LENGTH=476;; (*ITAG) Solyc05g010050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4244724-4252159 transcript_region:SL2.40ch05:4244724..4252159- go_terms:GO:0010296 functional_description:"Alpha/beta hydrolase fold-3 (AHRD V1 *--- Q1BFL1_MYCSS); contains Interpro domain(s) IPR002018 Carboxylesterase, type B "; GO:0010296 NbS00013990g0004.1 protein AED:0.67 eAED:0.67 QI:18|0|0|0.5|0|0|2|0|48 NbS00014040g0003.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|113 NbS00007386g0106.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|541 NbS00001189g0006.1 protein AED:0.11 eAED:0.11 QI:109|0.75|0.6|1|0.75|0.6|5|263|972; (*GB) gi|359488670|ref|XP_002273438.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 41-like [Vitis vinifera];; (*SWP) sp|Q9LVX1|C3H41_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1;; (*TAIR) AT3G27700.2 (e_value=0.0) | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE LENGTH=908;; (*ITAG) Solyc12g035250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:24097531-24101454 transcript_region:SL2.40ch12:24097531..24101454- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 41 (AHRD V1 **-- C3H41_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00036116g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|57012756|sp|Q40476.1|ERF1_TOBAC (e_value=1e-121) RecName: Full=Ethylene-responsive transcription factor 1; Short=NtERF1; AltName: Full=Ethylene-responsive element-binding factor 1; Short=EREBP-1;; (*SWP) sp|Q40476|ERF1_TOBAC (e_value=4e-123) Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1;; (*TAIR) AT4G17500.1 (e_value=1e-46) | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268;; (*ITAG) Solyc05g052050.1.1 (e_value=4e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61543529-61544233 transcript_region:SL2.40ch05:61543529..61544233+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 **** D1MWZ3_CITLA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00008176g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|225445963|ref|XP_002265583.1| (e_value=9e-78) PREDICTED: oligosaccharyltransferase complex subunit ostc [Vitis vinifera];; (*SWP) sp|Q5ZJR3|OSTC_CHICK (e_value=4e-35) Oligosaccharyltransferase complex subunit OSTC OS=Gallus gallus GN=OSTC PE=2 SV=1;; (*TAIR) AT4G29870.1 (e_value=2e-79) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr4:14606012-14606530 FORWARD LENGTH=172;; (*ITAG) Solyc05g006080.1.1 (e_value=2e-98) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:814853-815389 transcript_region:SL2.40ch05:814853..815389- go_terms:GO:0004579 functional_description:"Oligosaccharyltransferase complex subunit ostc-B (AHRD V1 **-- OSTCB_XENLA); contains Interpro domain(s) IPR019353 Oligosaccharyltransferase complex, subunit DC2, eukaryote "; GO:0004579 NbS00008176g0011.1 protein AED:0.32 eAED:0.32 QI:212|1|0.83|1|1|1|6|0|335; (*GB) gi|356501290|ref|XP_003519458.1| (e_value=1e-140) PREDICTED: cyclin-D1-1-like [Glycine max];; (*SWP) sp|P42751|CCD11_ARATH (e_value=2e-121) Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3;; (*TAIR) AT1G70210.1 (e_value=2e-122) | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:26440015-26441980 FORWARD LENGTH=339;; (*ITAG) Solyc05g006050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:786643-789497 transcript_region:SL2.40ch05:786643..789497- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin D1 (AHRD V1 **** Q8GVE0_HELTU); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00008176g0015.1 protein AED:0.21 eAED:0.21 QI:207|1|1|1|0.66|0.75|4|730|260; (*GB) gi|255581196|ref|XP_002531411.1| (e_value=3e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70200.1 (e_value=3e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:26432514-26434351 REVERSE LENGTH=538;; (*ITAG) Solyc05g006070.2.1 (e_value=7e-115) genomic_reference:SL2.40ch05 gene_region:809964-812438 transcript_region:SL2.40ch05:809964..812438+ go_terms:GO:0003676 functional_description:"RNA recognition motif (RRM)-containing protein-like (AHRD V1 *-*- Q6Z867_ORYSJ); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00060509g0004.1 protein AED:0.05 eAED:0.05 QI:76|0.33|0|1|0.66|0.5|4|0|217; (*GB) gi|224143590|ref|XP_002325008.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT4G29100.1 (e_value=9e-12) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341140-14344575 FORWARD LENGTH=407;; (*ITAG) Solyc03g120530.2.1 (e_value=1e-38) genomic_reference:SL2.40ch03 gene_region:62953941-62958187 transcript_region:SL2.40ch03:62953941..62958187+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00006748g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.5|2|0|171; (*GB) gi|335059680|gb|AEH27114.1| (e_value=5e-78) ribosomal protein S3 [Solanum lycopersicum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-78) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=2e-66) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=2e-57) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00014686g0005.1 protein AED:0.68 eAED:0.84 QI:84|0.2|0|0.66|0|0.33|6|0|125; (*GB) gi|297737748|emb|CBI26949.3| (e_value=6e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01130.1 (e_value=2e-29) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:88847-94635 REVERSE LENGTH=1113;; (*ITAG) Solyc04g007510.2.1 (e_value=3e-33) genomic_reference:SL2.40ch04 gene_region:1184948-1200116 transcript_region:SL2.40ch04:1184948..1200116+ go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0005515 NbS00014686g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|81; (*ITAG) Solyc04g074770.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:58285246-58286944 transcript_region:SL2.40ch04:58285246..58286944- functional_description:"Unknown Protein (AHRD V1)"; NbS00057448g0001.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.66|1|1|3|0|113; (*GB) gi|38489222|gb|AAR21296.1| (e_value=1e-45) NDR1-like protein [Nicotiana benthamiana];; (*ITAG) Solyc12g005230.1.1 (e_value=7e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:147174-153831 transcript_region:SL2.40ch12:147174..153831+ functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00030211g0003.1 protein AED:0.02 eAED:0.02 QI:318|0.5|0.33|1|0|0|3|0|418; (*GB) gi|225423965|ref|XP_002279257.1| (e_value=4e-50) PREDICTED: ethylene-responsive transcription factor ERF118 [Vitis vinifera];; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=1e-23) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=8e-25) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc04g007180.1.1 (e_value=2e-134) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:874498-875505 transcript_region:SL2.40ch04:874498..875505+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00041180g0001.1 protein AED:0.95 eAED:0.95 QI:0|0|0|0.5|1|1|2|0|67 NbS00009910g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0|1|1|1|4|0|579; (*GB) gi|225442924|ref|XP_002265172.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268161 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=2e-25) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT4G32250.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15570285-15572528 REVERSE LENGTH=611;; (*ITAG) Solyc01g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00009910g0016.1 protein AED:0.30 eAED:0.30 QI:114|0.75|0.8|1|0.25|0.4|5|381|84; (*GB) gi|297605899|ref|NP_001057729.2| (e_value=7e-35) Os06g0508700 [Oryza sativa Japonica Group];; (*SWP) sp|Q9ZTS1|SYM_ORYSJ (e_value=2e-36) Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2;; (*TAIR) AT4G13780.1 (e_value=4e-33) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=4e-37) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00009910g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.6|1|1|5|0|240; (*GB) gi|224089629|ref|XP_002308787.1| (e_value=6e-19) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=6e-15) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=4e-16) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc01g008660.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:2721644-2722893 transcript_region:SL2.40ch01:2721644..2722893- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009910g0014.1 protein AED:0.48 eAED:0.75 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|255553227|ref|XP_002517656.1| (e_value=1e-15) protein kinase, putative [Ricinus communis];; (*ITAG) Solyc01g005030.2.1 (e_value=8e-24) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00001042g0008.1 protein AED:0.17 eAED:0.17 QI:189|1|1|1|0.66|0.5|10|397|210; (*GB) gi|225445190|ref|XP_002284205.1| (e_value=1e-133) PREDICTED: rac-like GTP-binding protein ARAC7 isoform 1 [Vitis vinifera];; (*SWP) sp|O82480|RAC7_ARATH (e_value=2e-124) Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1;; (*TAIR) AT4G28950.1 (e_value=1e-125) | Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 | RHO-related protein from plants 9 | chr4:14278289-14279705 FORWARD LENGTH=209;; (*ITAG) Solyc07g020800.2.1 (e_value=3e-141) genomic_reference:SL2.40ch07 gene_region:13554611-13557326 transcript_region:SL2.40ch07:13554611..13557326- go_terms:GO:0003924 functional_description:"Rac-like GTP-binding protein 4 (AHRD V1 **-- B6TYX5_MAIZE); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00059572g0005.1 protein AED:0.07 eAED:0.09 QI:48|0.85|0.75|1|0.71|0.87|8|304|269; (*GB) gi|255550892|ref|XP_002516494.1| (e_value=0.0) Serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9M077|AUR1_ARATH (e_value=0.0) Serine/threonine-protein kinase Aurora-1 OS=Arabidopsis thaliana GN=AUR1 PE=2 SV=1;; (*TAIR) AT4G32830.1 (e_value=0.0) | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842557-15844354 FORWARD LENGTH=294;; (*ITAG) Solyc08g066050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51711501-51714276 transcript_region:SL2.40ch08:51711501..51714276+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 6 (AHRD V1 ***- B5X2V6_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00059572g0006.1 protein AED:0.30 eAED:0.92 QI:0|0|0|1|1|0.33|3|0|166 NbS00039417g0017.1 protein AED:0.25 eAED:0.27 QI:87|0.75|0|1|0.5|0.2|5|0|814; (*GB) gi|48209914|gb|AAT40508.1| (e_value=0.0) Glycosyl hydrolases family 17 protein [Solanum demissum];; (*SWP) sp|O04195|Y2992_ARATH (e_value=4e-63) Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2;; (*TAIR) AT3G55780.1 (e_value=1e-106) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:20705627-20707021 FORWARD LENGTH=429;; (*ITAG) Solyc11g072230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52534222-52535457 transcript_region:SL2.40ch11:52534222..52535457- go_terms:GO:0005515,GO:0008810 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515,GO:0008810 NbS00039417g0020.1 protein AED:0.15 eAED:0.15 QI:519|0.87|0.77|1|0.62|0.66|9|44|409; (*GB) gi|255579122|ref|XP_002530409.1| (e_value=5e-173) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GXP4|Y2991_ARATH (e_value=3e-120) Uncharacterized protein At2g39910 OS=Arabidopsis thaliana GN=At2g39910 PE=2 SV=2;; (*TAIR) AT2G39910.1 (e_value=2e-121) | Symbols: | ARM repeat superfamily protein | chr2:16660604-16662886 FORWARD LENGTH=436;; (*ITAG) Solyc06g009690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3633968-3638512 transcript_region:SL2.40ch06:3633968..3638512- go_terms:GO:0005488 functional_description:"cDNA clone J033051C12 full insert sequence (AHRD V1 *-*- B7EME2_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00020486g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|127 NbS00020486g0006.1 protein AED:0.10 eAED:0.10 QI:444|0.90|0.91|1|1|1|12|196|719; (*GB) gi|297744033|emb|CBI37003.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1P7|BOR2_ARATH (e_value=0.0) Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1;; (*TAIR) AT3G62270.1 (e_value=0.0) | Symbols: | HCO3- transporter family | chr3:23042528-23045633 REVERSE LENGTH=703;; (*ITAG) Solyc01g079150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70748785-70752675 transcript_region:SL2.40ch01:70748785..70752675- go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0005452 NbS00020486g0007.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|0.5|0.66|3|0|95 NbS00047735g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=5e-105) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=7e-98) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28570.1 (e_value=3e-87) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr1:10041838-10044112 REVERSE LENGTH=389;; (*ITAG) Solyc12g017460.1.1 (e_value=2e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00023827g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|728; (*GB) gi|169674674|gb|ACA64703.1| (e_value=0.0) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-164) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=2e-170) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00023827g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.90|0.91|1|1|1|12|672|639; (*GB) gi|359487320|ref|XP_003633566.1| (e_value=0.0) PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Vitis vinifera];; (*SWP) sp|O94808|GFPT2_HUMAN (e_value=0.0) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3;; (*TAIR) AT3G24090.1 (e_value=0.0) | Symbols: | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971 REVERSE LENGTH=677;; (*ITAG) Solyc01g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising "; GO:0008152,GO:0005975,GO:0005737 NbS00023827g0003.1 protein AED:0.23 eAED:0.35 QI:599|0.87|0.88|1|0.62|0.55|9|2329|184; (*GB) gi|224059600|ref|XP_002299927.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12470.1 (e_value=1e-94) | Symbols: | Protein of unknown function (DUF3411) | chr5:4044950-4047290 REVERSE LENGTH=386;; (*ITAG) Solyc01g087750.2.1 (e_value=7e-121) genomic_reference:SL2.40ch01 gene_region:74432516-74437097 transcript_region:SL2.40ch01:74432516..74437097- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q015C3_OSTTA)"; NbS00044366g0005.1 protein AED:0.04 eAED:0.04 QI:171|1|1|1|0.8|0.66|6|303|379; (*GB) gi|225440422|ref|XP_002269511.1| (e_value=0.0) PREDICTED: hsp70-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q99P31|HPBP1_MOUSE (e_value=1e-16) Hsp70-binding protein 1 OS=Mus musculus GN=Hspbp1 PE=2 SV=1;; (*TAIR) AT3G09350.1 (e_value=0.0) | Symbols: Fes1A | Fes1A | chr3:2871216-2873109 FORWARD LENGTH=363;; (*ITAG) Solyc09g011030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4368272-4373182 transcript_region:SL2.40ch09:4368272..4373182- go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- C8V0S6_EMENI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00044366g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|1|1|3|0|245; (*GB) gi|297740339|emb|CBI30521.3| (e_value=6e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=3e-89) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT5G02140.1 (e_value=8e-112) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:423384-424437 FORWARD LENGTH=294;; (*ITAG) Solyc10g084840.1.1 (e_value=9e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63557692-63558575 transcript_region:SL2.40ch10:63557692..63558575- functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9LZL8_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00061094g0003.1 protein AED:0.00 eAED:0.00 QI:213|1|1|1|1|1|2|383|238; (*GB) gi|225465032|ref|XP_002264774.1| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100249643 [Vitis vinifera];; (*TAIR) AT1G79160.1 (e_value=4e-50) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779862-29780668 REVERSE LENGTH=239;; (*ITAG) Solyc07g066570.2.1 (e_value=9e-71) genomic_reference:SL2.40ch07 gene_region:65187912-65188759 transcript_region:SL2.40ch07:65187912..65188759- functional_description:">F3O9.30 (AHRD V1 ***- Q9SA48_ARATH)"; NbS00034196g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.5|1|3|0|579; (*GB) gi|225452116|ref|XP_002281064.1| (e_value=6e-93) PREDICTED: uncharacterized protein LOC100246403 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=4e-41) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc02g086360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43601058-43604121 transcript_region:SL2.40ch02:43601058..43604121- go_terms:GO:0055114 functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0055114 NbS00034196g0010.1 protein AED:0.01 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|707; (*GB) gi|359488246|ref|XP_002281016.2| (e_value=3e-113) PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Vitis vinifera];; (*SWP) sp|Q9C9N6|PMI2_ARATH (e_value=4e-37) Protein PLASTID MOVEMENT IMPAIRED 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1;; (*TAIR) AT1G66840.1 (e_value=3e-38) | Symbols: PMI2, WEB2 | Plant protein of unknown function (DUF827) | chr1:24933998-24936116 REVERSE LENGTH=607;; (*ITAG) Solyc02g086350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43598508-43600584 transcript_region:SL2.40ch02:43598508..43600584+ functional_description:"Protein PLASTID MOVEMENT IMPAIRED 2 (AHRD V1 ***- PMI2_ARATH); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00009596g0002.1 protein AED:0.07 eAED:0.07 QI:160|1|1|1|1|1|3|380|194; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=6e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=9e-63) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G49620.1 (e_value=5e-85) | Symbols: AtMYB78, MYB78 | myb domain protein 78 | chr5:20137491-20139384 REVERSE LENGTH=307;; (*ITAG) Solyc05g053330.2.1 (e_value=2e-95) genomic_reference:SL2.40ch05 gene_region:62594925-62596759 transcript_region:SL2.40ch05:62594925..62596759+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00042760g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.66|1|0.75|0.77|9|0|468; (*GB) gi|1694625|dbj|BAA11475.1| (e_value=0.0) omega-3 fatty acid desaturase [Nicotiana tabacum];; (*SWP) sp|P48620|FAD3C_SESIN (e_value=0.0) Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=0.0) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g051400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31251815-31254230 transcript_region:SL2.40ch06:31251815..31254230+ go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** Q7X7I9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00042760g0007.1 protein AED:0.10 eAED:0.18 QI:34|0|0|1|0|0|2|0|124; (*GB) gi|325516270|gb|ADZ24713.1| (e_value=4e-45) phosphoribosylanthranilate isomerase [Solanum pennellii];; (*SWP) sp|Q42527|PAI2_ARATH (e_value=7e-31) N-(5'-phosphoribosyl)anthranilate isomerase 2, chloroplastic OS=Arabidopsis thaliana GN=PAI2 PE=2 SV=1;; (*TAIR) AT1G07780.4 (e_value=1e-32) | Symbols: PAI1, TRP6 | phosphoribosylanthranilate isomerase 1 | chr1:2410563-2411833 REVERSE LENGTH=213;; (*ITAG) Solyc06g051410.2.1 (e_value=1e-47) genomic_reference:SL2.40ch06 gene_region:31254720-31257535 transcript_region:SL2.40ch06:31254720..31257535- go_terms:GO:0008881,GO:0004640 functional_description:"N-(5&apos-phosphoribosyl)anthranilate isomerase (AHRD V1 **** B9SQM9_RICCO); contains Interpro domain(s) IPR011060 Ribulose-phosphate binding barrel "; GO:0008881,GO:0004640 NbC26217469g0003.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|1|0|0.33|3|191|376; (*GB) gi|224111638|ref|XP_002315928.1| (e_value=2e-171) predicted protein [Populus trichocarpa];; (*TAIR) AT1G68390.1 (e_value=1e-148) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408;; (*ITAG) Solyc05g009120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3244625-3248053 transcript_region:SL2.40ch05:3244625..3248053- go_terms:GO:0005515 functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00011305g0009.1 protein AED:0.00 eAED:0.00 QI:65|1|1|1|0.5|0.66|3|247|99; (*GB) gi|147794982|emb|CAN71764.1| (e_value=2e-33) hypothetical protein VITISV_039227 [Vitis vinifera];; (*SWP) sp|P73300|RL36_SYNY3 (e_value=3e-16) 50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpmJ PE=3 SV=1;; (*TAIR) AT5G20180.2 (e_value=4e-32) | Symbols: | Ribosomal protein L36 | chr5:6811312-6811910 FORWARD LENGTH=103;; (*ITAG) Solyc07g008270.2.1 (e_value=3e-49) genomic_reference:SL2.40ch07 gene_region:3030451-3032090 transcript_region:SL2.40ch07:3030451..3032090- go_terms:GO:0005840 functional_description:"50S ribosomal protein L36 (AHRD V1 --*- A6CGQ0_9PLAN); contains Interpro domain(s) IPR000473 Ribosomal protein L36 "; GO:0005840 NbS00011305g0010.1 protein AED:0.14 eAED:0.14 QI:183|0|0.5|1|1|1|2|0|632; (*GB) gi|350538507|ref|NP_001234858.1| (e_value=0.0) EIN3-binding F-box protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=0.0) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1;; (*TAIR) AT2G25490.1 (e_value=0.0) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628;; (*ITAG) Solyc07g008250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2976382-2979543 transcript_region:SL2.40ch07:2976382..2979543- go_terms:GO:0005515,GO:0004842 functional_description:"SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C5FDH1_NANOT); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00011305g0008.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|119; (*GB) gi|225445525|ref|XP_002285241.1| (e_value=8e-35) PREDICTED: uncharacterized protein LOC100245670 [Vitis vinifera];; (*TAIR) AT5G25360.2 (e_value=2e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc07g008260.2.1 (e_value=7e-49) genomic_reference:SL2.40ch07 gene_region:3015219-3024992 transcript_region:SL2.40ch07:3015219..3024992- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00018503g0021.1 protein AED:0.11 eAED:0.11 QI:0|0.62|0.55|1|0.62|0.66|9|0|530; (*GB) gi|359495908|ref|XP_002272814.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At3g07070-like [Vitis vinifera];; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=7e-45) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT1G51940.1 (e_value=1e-79) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651;; (*ITAG) Solyc06g069610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39741466-39744893 transcript_region:SL2.40ch06:39741466..39744893+ go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00018503g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|0.66|1|1|3|170|654; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13940.1 (e_value=8e-11) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005;; (*ITAG) Solyc06g069630.2.1 (e_value=1e-104) genomic_reference:SL2.40ch06 gene_region:39748740-39752000 transcript_region:SL2.40ch06:39748740..39752000- functional_description:"Unknown Protein (AHRD V1)"; NbS00018503g0017.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|3|0|468; (*GB) gi|224124210|ref|XP_002330132.1| (e_value=5e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGJ1|Y1743_ARATH (e_value=6e-148) Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1;; (*TAIR) AT1G74360.1 (e_value=5e-149) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:27954299-27957911 FORWARD LENGTH=1106;; (*ITAG) Solyc06g069650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39767907-39771642 transcript_region:SL2.40ch06:39767907..39771642- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018503g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|356550993|ref|XP_003543864.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100789388 [Glycine max];; (*TAIR) AT5G61260.1 (e_value=8e-19) | Symbols: | Plant calmodulin-binding protein-related | chr5:24637109-24638599 FORWARD LENGTH=496;; (*ITAG) Solyc06g069620.1.1 (e_value=1e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00018503g0007.1 protein AED:0.63 eAED:0.65 QI:0|0|0|1|1|1|2|0|105; (*GB) gi|57013966|ref|YP_173438.1| (e_value=1e-17) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00018503g0023.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|0|0|2|0|183; (*ITAG) Solyc06g069620.1.1 (e_value=2e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00018503g0024.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|0|0|2|0|154; (*ITAG) Solyc06g069620.1.1 (e_value=7e-50) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00018503g0027.1 protein AED:0.34 eAED:0.51 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|27446529|gb|AAG23858.1| (e_value=9e-40) ribosomal protein L2 [Rheum x hybridum];; (*SWP) sp|Q09FP6|RK2_NANDO (e_value=1e-41) 50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=1e-40) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=6e-42) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00018503g0026.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|120; (*GB) gi|28261756|ref|NP_783270.1| (e_value=8e-44) ribosomal protein L22 [Atropa belladonna];; (*SWP) sp|Q8S8V4|RK22_ATRBE (e_value=2e-45) 50S ribosomal protein L22, chloroplastic OS=Atropa belladonna GN=rpl22 PE=3 SV=1;; (*ITAG) ATCG00810.1 (e_value=5e-36) | Symbols: RPL22 | ribosomal protein L22 | chrC:83467-83949 REVERSE LENGTH=160;; (*ITAG) Solyc01g007610.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:1879619-1881527 transcript_region:SL2.40ch01:1879619..1881527- go_terms:GO:0005840,GO:0015934,GO:0015935,GO:0003723 functional_description:"30S ribosomal protein S3 chloroplastic (AHRD V1 ***- D3WBD9_9BORA); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial "; GO:0005840,GO:0015934,GO:0015935,GO:0003723 NbS00028120g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|69; (*ITAG) Solyc11g007190.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1616508-1616720 transcript_region:SL2.40ch11:1616508..1616720- functional_description:"Unknown Protein (AHRD V1)"; NbS00030458g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|255565337|ref|XP_002523660.1| (e_value=2e-21) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g031990.1.1 (e_value=3e-56) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:17967127-17967675 transcript_region:SL2.40ch02:17967127..17967675+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030458g0018.1 protein AED:0.14 eAED:0.14 QI:133|0.7|0.54|1|0.8|0.63|11|204|934; (*GB) gi|359472765|ref|XP_002276004.2| (e_value=0.0) PREDICTED: copper-transporting ATPase RAN1-like [Vitis vinifera];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=0.0) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=0.0) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00030458g0017.1 protein AED:0.33 eAED:0.34 QI:29|0.36|0.33|0.83|0.36|0.5|12|0|355; (*GB) gi|31096385|emb|CAC85464.1| (e_value=1e-149) putative urease accessory protein D [Solanum lycopersicum];; (*SWP) sp|A7HHM9|URED_ANADF (e_value=2e-28) Urease accessory protein UreD OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureD PE=3 SV=1;; (*TAIR) AT2G35035.1 (e_value=7e-103) | Symbols: URED | urease accessory protein D | chr2:14763387-14765045 REVERSE LENGTH=294;; (*ITAG) Solyc02g031980.2.1 (e_value=2e-152) genomic_reference:SL2.40ch02 gene_region:17941729-17949640 transcript_region:SL2.40ch02:17941729..17949640+ go_terms:GO:0006807 functional_description:"Urease accessory protein ureD (AHRD V1 ***- B9A9D1_MORAL); contains Interpro domain(s) IPR002669 Urease accessory protein UreD "; GO:0006807 NbS00030458g0019.1 protein AED:0.27 eAED:0.27 QI:299|1|1|1|0.6|0.33|6|313|98; (*GB) gi|388502498|gb|AFK39315.1| (e_value=2e-52) unknown [Lotus japonicus];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=1e-48) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=8e-50) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=5e-47) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00027451g0006.1 protein AED:0.14 eAED:0.14 QI:8|0.91|0.92|1|0.83|0.69|13|318|438; (*GB) gi|255583651|ref|XP_002532580.1| (e_value=0.0) cop9 signalosome complex subunit, putative [Ricinus communis];; (*SWP) sp|Q8W207|CSN2_ARATH (e_value=0.0) COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1;; (*TAIR) AT2G26990.1 (e_value=0.0) | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome family protein | chr2:11519684-11522412 REVERSE LENGTH=439;; (*ITAG) Solyc11g062430.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46555213-46562208 transcript_region:SL2.40ch11:46555213..46562208- functional_description:"COP9 signalosome complex subunit 2 (AHRD V1 ***- B6TIW9_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; NbS00048071g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|68 NbS00047179g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.92|0.85|1|0.84|0.92|14|423|991; (*GB) gi|6685538|sp|Q40554.1|EIF3A_TOBAC (e_value=0.0) RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta;; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=0.0) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1;; (*TAIR) AT4G11420.1 (e_value=0.0) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987;; (*ITAG) Solyc09g010460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3817371-3827369 transcript_region:SL2.40ch09:3817371..3827369+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- Q24JU4_HUMAN); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00047179g0001.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|0.66|1|1|3|0|646; (*GB) gi|359488800|ref|XP_002272412.2| (e_value=6e-152) PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=1e-32) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G27550.1 (e_value=1e-140) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:10208010-10209899 REVERSE LENGTH=491;; (*ITAG) Solyc07g047900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56430159-56433693 transcript_region:SL2.40ch07:56430159..56433693- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00043678g0005.1 protein AED:0.32 eAED:0.39 QI:0|0.83|0.92|1|0.83|0.92|13|282|446; (*GB) gi|255576717|ref|XP_002529246.1| (e_value=5e-172) Protein FAM50A, putative [Ricinus communis];; (*SWP) sp|Q69JZ7|XCT_ORYSJ (e_value=1e-171) Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1;; (*TAIR) AT2G21150.1 (e_value=5e-165) | Symbols: XCT | XAP5 family protein | chr2:9065397-9067921 FORWARD LENGTH=337;; (*ITAG) Solyc01g111140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89267732-89273059 transcript_region:SL2.40ch01:89267732..89273059+ go_terms:GO:0005634 functional_description:"Protein FAM50 homolog (AHRD V1 *--- FAM50_DROPS); contains Interpro domain(s) IPR007005 XAP5 protein "; GO:0005634 NbS00017550g0012.1 protein AED:0.14 eAED:0.14 QI:377|1|0.88|1|1|1|9|0|348; (*GB) gi|37781556|gb|AAP42567.1| (e_value=0.0) UDP-glucose 4-epimerase [Solanum tuberosum];; (*SWP) sp|O65781|GALE2_CYATE (e_value=0.0) UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1;; (*TAIR) AT4G10960.1 (e_value=0.0) | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351;; (*ITAG) Solyc12g055930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47277534-47281131 transcript_region:SL2.40ch12:47277534..47281131- go_terms:GO:0006012,GO:0044237,GO:0008152 functional_description:"UDP-glucose 4-epimerase (AHRD V1 ***- Q6XZA0_SOLTU); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0006012,GO:0044237,GO:0008152 NbS00017550g0015.1 protein AED:0.45 eAED:0.45 QI:85|0|0.5|0.5|0|0.5|2|0|117 NbS00017550g0017.1 protein AED:0.12 eAED:0.12 QI:136|1|1|1|0|0.5|2|345|118; (*GB) gi|255542770|ref|XP_002512448.1| (e_value=7e-45) 50S ribosomal protein L18, putative [Ricinus communis];; (*TAIR) AT5G27820.1 (e_value=9e-44) | Symbols: | Ribosomal L18p/L5e family protein | chr5:9860584-9860928 FORWARD LENGTH=114;; (*ITAG) Solyc07g045390.1.1 (e_value=6e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55826799-55827089 transcript_region:SL2.40ch07:55826799..55827089+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6SMG7_MAIZE); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00017550g0013.1 protein AED:0.13 eAED:0.14 QI:0|0|0.5|1|1|1|2|224|561; (*GB) gi|225426304|ref|XP_002268042.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=5e-38) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc08g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62431860-62434624 transcript_region:SL2.40ch08:62431860..62434624- go_terms:GO:0004428 functional_description:"Phosphatidylinositol 3-and 4-kinase family (Fragment) (AHRD V1 *--* A6N0X2_ORYSI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00003393g0012.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0|1|0.66|0.5|4|0|155; (*ITAG) Solyc01g108380.1.1 (e_value=9e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87461709-87462033 transcript_region:SL2.40ch01:87461709..87462033- go_terms:GO:0009611 functional_description:"Protease inhibitor protein (AHRD V1 -**- B3FNP9_HEVBR); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00003393g0010.1 protein AED:0.02 eAED:0.02 QI:67|1|1|1|1|1|2|76|173; (*GB) gi|224105511|ref|XP_002313837.1| (e_value=4e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15780.1 (e_value=2e-49) | Symbols: | Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257;; (*ITAG) Solyc01g108350.2.1 (e_value=1e-107) genomic_reference:SL2.40ch01 gene_region:87454424-87455286 transcript_region:SL2.40ch01:87454424..87455286+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00003393g0011.1 protein AED:0.34 eAED:0.38 QI:0|0.5|0.55|0.77|1|1|9|0|354; (*GB) gi|355329950|dbj|BAL14274.1| (e_value=0.0) cyclophilin 40 [Nicotiana tabacum];; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1;; (*TAIR) AT2G15790.1 (e_value=0.0) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361;; (*ITAG) Solyc01g108340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87448017-87452641 transcript_region:SL2.40ch01:87448017..87452641+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003755 NbS00019136g0004.1 protein AED:0.23 eAED:0.23 QI:239|0.96|0.96|1|0.80|0.88|27|469|805; (*GB) gi|359484460|ref|XP_002273836.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 3-like [Vitis vinifera];; (*SWP) sp|Q96JB2|COG3_HUMAN (e_value=8e-140) Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3;; (*TAIR) AT1G73430.2 (e_value=0.0) | Symbols: | sec34-like family protein | chr1:27604096-27610829 FORWARD LENGTH=784;; (*ITAG) Solyc04g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2253610-2275631 transcript_region:SL2.40ch04:2253610..2275631+ go_terms:GO:0008565,GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 3 (AHRD V1 ***- COG3_HUMAN); contains Interpro domain(s) IPR007265 Sec34-like protein "; GO:0008565,GO:0005515 NbS00041555g0002.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|68 NbS00026157g0022.1 protein AED:0.10 eAED:0.10 QI:411|0.92|0.93|1|0.85|0.86|15|402|1109; (*GB) gi|297743269|emb|CBI36136.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15240.2 (e_value=0.0) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr1:5243799-5248604 FORWARD LENGTH=1020;; (*ITAG) Solyc03g120770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63101318-63111389 transcript_region:SL2.40ch03:63101318..63111389+ go_terms:GO:0007154 functional_description:"At1g15240-like protein (Fragment) (AHRD V1 *-*- C0JCI9_9BRAS); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00026157g0007.1 protein AED:0.24 eAED:0.25 QI:76|1|0.5|1|0|0|2|0|223; (*GB) gi|224073909|ref|XP_002304197.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15260.1 (e_value=2e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5249834-5250370 FORWARD LENGTH=178;; (*ITAG) Solyc03g120790.1.1 (e_value=4e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63116563-63117252 transcript_region:SL2.40ch03:63116563..63117252+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026157g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|378; (*GB) gi|359496222|ref|XP_002263756.2| (e_value=7e-108) PREDICTED: pentatricopeptide repeat-containing protein At3g13150-like [Vitis vinifera];; (*SWP) sp|Q9LK57|PP226_ARATH (e_value=2e-97) Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1;; (*TAIR) AT3G13160.1 (e_value=2e-98) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394;; (*ITAG) Solyc02g079830.1.1 (e_value=2e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00026157g0026.1 protein AED:0.04 eAED:0.04 QI:83|1|0.66|1|0|0|3|0|81; (*GB) gi|357468393|ref|XP_003604481.1| (e_value=3e-51) Ribosomal protein L37 [Medicago truncatula];; (*SWP) sp|Q8LEM8|RL373_ARATH (e_value=4e-50) 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1;; (*TAIR) AT3G16080.1 (e_value=3e-51) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:5454892-5455677 FORWARD LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=8e-53) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00026157g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|224073917|ref|XP_002304198.1| (e_value=4e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15230.1 (e_value=8e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5242729-5243196 REVERSE LENGTH=155;; (*ITAG) Solyc03g120740.1.1 (e_value=8e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63078678-63079178 transcript_region:SL2.40ch03:63078678..63079178- functional_description:"Unknown Protein (AHRD V1)"; NbS00026157g0032.1 protein AED:0.16 eAED:0.19 QI:269|0.55|0.5|1|0.55|0.8|10|0|365; (*GB) gi|255549968|ref|XP_002516035.1| (e_value=3e-87) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25737.1 (e_value=3e-76) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc03g120730.2.1 (e_value=9e-139) genomic_reference:SL2.40ch03 gene_region:63072823-63076833 transcript_region:SL2.40ch03:63072823..63076833- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00026157g0038.1 protein AED:0.24 eAED:0.25 QI:178|0.76|0.64|1|0.69|0.71|14|0|747; (*GB) gi|13536983|dbj|BAB40710.1| (e_value=0.0) BY-2 kinesin-like protein 10 [Nicotiana tabacum];; (*SWP) sp|Q6S004|KIF6_DICDI (e_value=5e-112) Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1;; (*TAIR) AT3G16060.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr3:5447503-5451196 FORWARD LENGTH=684;; (*ITAG) Solyc03g120810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63120435-63126195 transcript_region:SL2.40ch03:63120435..63126195- go_terms:GO:0007018 functional_description:"BY-inesin-like protein 10 (AHRD V1 ***- Q9AVP4_TOBAC); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00026157g0034.1 protein AED:0.28 eAED:0.28 QI:301|1|0.87|1|0.85|0.87|8|0|586; (*GB) gi|359484580|ref|XP_002284430.2| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9C821|PEK15_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=1 SV=1;; (*TAIR) AT1G52290.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19470251-19472362 REVERSE LENGTH=509;; (*ITAG) Solyc03g120760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63085379-63091939 transcript_region:SL2.40ch03:63085379..63091939- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00026157g0037.1 protein AED:0.33 eAED:0.33 QI:0|1|0.75|1|1|1|4|0|365; (*GB) gi|359482598|ref|XP_002279534.2| (e_value=2e-126) PREDICTED: putative Peroxidase 48-like [Vitis vinifera];; (*SWP) sp|O81755|PER48_ARATH (e_value=1e-95) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=9e-85) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc03g120800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63117512-63119653 transcript_region:SL2.40ch03:63117512..63119653- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00026157g0033.1 protein AED:0.30 eAED:0.34 QI:0|0.85|0.75|1|0.57|0.62|8|275|221; (*GB) gi|116672840|gb|ABK15561.1| (e_value=2e-145) small GTPase Rab2 [Capsicum annuum];; (*SWP) sp|O24461|RAB7_PRUAR (e_value=1e-140) Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT1G52280.1 (e_value=1e-137) | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D | chr1:19468150-19469449 REVERSE LENGTH=206;; (*ITAG) Solyc03g120750.2.1 (e_value=1e-149) genomic_reference:SL2.40ch03 gene_region:63080116-63084324 transcript_region:SL2.40ch03:63080116..63084324- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00026157g0008.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|255550010|ref|XP_002516056.1| (e_value=8e-34) Peroxidase 57 precursor, putative [Ricinus communis];; (*SWP) sp|O81755|PER48_ARATH (e_value=2e-22) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=1e-23) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc03g120800.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:63117512-63119653 transcript_region:SL2.40ch03:63117512..63119653- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00026157g0035.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|68 NbS00043630g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.82|0.72|0.94|0.47|0.61|18|0|594; (*GB) gi|356524533|ref|XP_003530883.1| (e_value=0.0) PREDICTED: protein VAC14 homolog [Glycine max];; (*SWP) sp|Q66L58|VAC14_DANRE (e_value=7e-107) Protein VAC14 homolog OS=Danio rerio GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc04g008010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1656495-1673137 transcript_region:SL2.40ch04:1656495..1673137- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00039676g0016.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|296; (*GB) gi|324022716|gb|ADY15314.1| (e_value=1e-71) R2R3-MYB transcription factor [Prunus avium];; (*SWP) sp|Q38850|MYB5_ARATH (e_value=1e-60) Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1;; (*TAIR) AT3G13540.1 (e_value=9e-62) | Symbols: ATMYB5, MYB5 | myb domain protein 5 | chr3:4420239-4421443 FORWARD LENGTH=249;; (*ITAG) Solyc08g008480.2.1 (e_value=4e-111) genomic_reference:SL2.40ch08 gene_region:2871831-2873624 transcript_region:SL2.40ch08:2871831..2873624- go_terms:GO:0003677,GO:0045449 functional_description:"Myb transcription factor (AHRD V1 *--- A5A383_SOLSC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00039676g0015.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.71|1|1|1|7|0|730; (*GB) gi|255555687|ref|XP_002518879.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q498F0|WDR44_XENLA (e_value=2e-47) WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1;; (*TAIR) AT5G24320.1 (e_value=4e-165) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc08g008490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2876847-2880673 transcript_region:SL2.40ch08:2876847..2880673- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00039676g0020.1 protein AED:0.00 eAED:0.00 QI:175|1|1|1|1|1|2|158|249; (*GB) gi|1360084|emb|CAA66604.1| (e_value=4e-135) Zn finger protein [Nicotiana tabacum];; (*SWP) sp|Q43385|DOF37_ARATH (e_value=7e-38) Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2;; (*TAIR) AT3G61850.3 (e_value=5e-39) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22896212-22897150 FORWARD LENGTH=284;; (*ITAG) Solyc08g082910.1.1 (e_value=2e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62732664-62734361 transcript_region:SL2.40ch08:62732664..62734361+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 ***- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00039676g0017.1 protein AED:0.21 eAED:0.22 QI:0|1|0.66|1|1|1|6|0|563; (*GB) gi|211906506|gb|ACJ11746.1| (e_value=0.0) luminal binding protein [Gossypium hirsutum];; (*SWP) sp|P49118|BIP_SOLLC (e_value=0.0) Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc08g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62655311-62659585 transcript_region:SL2.40ch08:62655311..62659585+ go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00048836g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc07g065770.2.1 (e_value=2e-16) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00043999g0004.1 protein AED:0.00 eAED:0.00 QI:223|1|1|1|1|1|2|113|199; (*GB) gi|365222932|gb|AEW69818.1| (e_value=3e-57) Hop-interacting protein THI121 [Solanum lycopersicum];; (*TAIR) AT4G27310.1 (e_value=9e-30) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc12g005660.1.1 (e_value=6e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:351057-351746 transcript_region:SL2.40ch12:351057..351746- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00022646g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|1|1|3|0|285; (*GB) gi|300836821|gb|ADK38538.1| (e_value=9e-138) methylketone synthase Ib [Solanum lycopersicum];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=1e-70) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23610.1 (e_value=1e-72) | Symbols: ATMES3, MES3 | methyl esterase 3 | chr2:10044410-10046403 REVERSE LENGTH=263;; (*ITAG) Solyc01g108740.2.1 (e_value=2e-143) genomic_reference:SL2.40ch01 gene_region:87713290-87714523 transcript_region:SL2.40ch01:87713290..87714523- go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LG04_ARALY)"; GO:0080031,GO:0080030 NbS00022646g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.77|0.6|1|0.77|0.7|10|356|537; (*GB) gi|225428661|ref|XP_002284886.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262433 [Vitis vinifera];; (*TAIR) AT2G15860.1 (e_value=3e-152) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6905712-6909282 REVERSE LENGTH=512;; (*ITAG) Solyc01g108890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87788443-87793650 transcript_region:SL2.40ch01:87788443..87793650- functional_description:"Potential GTPase activation protein (AHRD V1 *-*- A8INH1_CHLRE)"; NbS00022646g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.66|1|1|1|3|266|344; (*GB) gi|147771160|emb|CAN76442.1| (e_value=2e-161) hypothetical protein VITISV_032921 [Vitis vinifera];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=2e-49) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT3G19000.1 (e_value=8e-128) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6553668-6554987 REVERSE LENGTH=352;; (*ITAG) Solyc01g108860.2.1 (e_value=7e-174) genomic_reference:SL2.40ch01 gene_region:87770045-87771692 transcript_region:SL2.40ch01:87770045..87771692- go_terms:GO:0016491,GO:0055114 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00022646g0013.1 protein AED:0.42 eAED:0.52 QI:0|0|0|1|0|0|3|0|148; (*GB) gi|255556243|ref|XP_002519156.1| (e_value=1e-25) Gibberellin 20 oxidase, putative [Ricinus communis];; (*TAIR) AT3G19010.3 (e_value=7e-19) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6556306-6557862 REVERSE LENGTH=319;; (*ITAG) Solyc01g108880.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:87786634-87788179 transcript_region:SL2.40ch01:87786634..87788179- go_terms:GO:0045431,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431,GO:0009815 NbS00040311g0010.1 protein AED:0.24 eAED:0.26 QI:1312|0.76|0.81|1|0.66|0.68|22|120|613; (*GB) gi|297740564|emb|CBI30746.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGE0|Y1765_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1;; (*TAIR) AT1G07650.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1014;; (*ITAG) Solyc02g071860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35784232-35794056 transcript_region:SL2.40ch02:35784232..35794056- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00040311g0014.1 protein AED:0.28 eAED:0.28 QI:272|0.78|0.75|1|0.42|0.65|20|258|899; (*GB) gi|224078996|ref|XP_002305711.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29750.2 (e_value=0.0) | Symbols: RKF1 | receptor-like kinase in flowers 1 | chr1:10414071-10420469 REVERSE LENGTH=1021;; (*ITAG) Solyc02g071870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35797454-35809682 transcript_region:SL2.40ch02:35797454..35809682- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00021386g0003.1 protein AED:0.00 eAED:0.00 QI:163|1|1|1|1|1|3|594|130; (*GB) gi|30013661|gb|AAP03873.1| (e_value=1e-69) photosystem I reaction center subunit X psaK [Nicotiana tabacum];; (*SWP) sp|Q9SUI5|PSAK_ARATH (e_value=2e-62) Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2;; (*TAIR) AT1G30380.1 (e_value=2e-63) | Symbols: PSAK | photosystem I subunit K | chr1:10722325-10723013 FORWARD LENGTH=130;; (*ITAG) Solyc08g006930.2.1 (e_value=7e-68) genomic_reference:SL2.40ch08 gene_region:1496863-1500142 transcript_region:SL2.40ch08:1496863..1500142- go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit X psaK (AHRD V1 ***- Q84QE6_TOBAC); contains Interpro domain(s) IPR017493 Photosystem I reaction center, PsaK, plant "; GO:0016020 NbC23761605g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|54; (*GB) gi|351721508|ref|NP_001235164.1| (e_value=2e-30) serine/threonine-protein kinase [Glycine max];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=7e-32) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G13160.1 (e_value=5e-33) | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176854-4179682 FORWARD LENGTH=456;; (*ITAG) Solyc05g024290.2.1 (e_value=1e-33) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00021131g0002.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.16|1|1|6|0|88 NbS00013550g0003.1 protein AED:0.31 eAED:0.40 QI:0|0|0|1|1|0.66|3|0|183; (*GB) gi|296082759|emb|CBI21764.3| (e_value=9e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23755|EF2_BETVU (e_value=9e-25) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT1G56070.1 (e_value=3e-26) | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843;; (*ITAG) Solyc08g062910.2.1 (e_value=5e-27) genomic_reference:SL2.40ch08 gene_region:49531008-49535044 transcript_region:SL2.40ch08:49531008..49535044- go_terms:GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0003746 NbS00011011g0007.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|488; (*GB) gi|255566553|ref|XP_002524261.1| (e_value=0.0) glycosyltransferase, putative [Ricinus communis];; (*TAIR) AT1G73160.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:27506534-27507994 FORWARD LENGTH=486;; (*ITAG) Solyc08g074970.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56269563-56271008 transcript_region:SL2.40ch08:56269563..56271008- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 **** A9B8A9_HERA2); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00011011g0027.1 protein AED:0.09 eAED:0.09 QI:401|0.75|0.88|1|0.5|0.55|9|581|363; (*GB) gi|21388546|emb|CAD33241.1| (e_value=0.0) putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9LKA3|MDHM2_ARATH (e_value=0.0) Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1;; (*TAIR) AT3G15020.1 (e_value=0.0) | Symbols: mMDH2 | Lactate/malate dehydrogenase family protein | chr3:5056139-5057941 FORWARD LENGTH=341;; (*ITAG) Solyc07g062650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62561877-62565142 transcript_region:SL2.40ch07:62561877..62565142+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q645N1_SOLLC); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00011011g0001.1 protein AED:0.15 eAED:0.16 QI:0|0|0.5|1|0|0.5|2|1805|454; (*GB) gi|225461628|ref|XP_002285377.1| (e_value=1e-111) PREDICTED: uncharacterized protein LOC100248626 [Vitis vinifera];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=1e-18) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G15010.2 (e_value=6e-104) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc12g014210.1.1 (e_value=3e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5054503-5055550 transcript_region:SL2.40ch12:5054503..5055550- go_terms:GO:0003688 functional_description:"RNA binding protein (AHRD V1 **-* B6TJJ4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003688 NbS00011011g0021.1 protein AED:0.32 eAED:0.32 QI:111|0.72|0.91|0.91|0.81|0.83|12|334|476; (*GB) gi|225461620|ref|XP_002283012.1| (e_value=0.0) PREDICTED: tRNA dimethylallyltransferase 9 [Vitis vinifera];; (*SWP) sp|Q9C5J6|IPT9_ARATH (e_value=0.0) tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1;; (*TAIR) AT5G20040.2 (e_value=0.0) | Symbols: ATIPT9, IPT9 | isopentenyltransferase 9 | chr5:6767939-6770980 REVERSE LENGTH=459;; (*ITAG) Solyc12g014190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5034317-5040335 transcript_region:SL2.40ch12:5034317..5040335- go_terms:GO:0008033 functional_description:"tRNA dimethylallyltransferase (AHRD V1 ***- D6YRN6_WADCW); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0008033 NbS00011011g0029.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.14|0.85|0.33|0.28|7|0|737; (*GB) gi|225461616|ref|XP_002283002.1| (e_value=6e-129) PREDICTED: transcription factor GTE4-like [Vitis vinifera];; (*SWP) sp|Q9LNC4|GTE4_ARATH (e_value=7e-91) Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1;; (*TAIR) AT1G06230.3 (e_value=6e-92) | Symbols: GTE4 | global transcription factor group E4 | chr1:1907626-1910183 FORWARD LENGTH=766;; (*ITAG) Solyc12g014170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5021721-5024196 transcript_region:SL2.40ch12:5021721..5024196- functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00011011g0023.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.8|1|0.5|0.4|5|261|331; (*GB) gi|359493609|ref|XP_002283037.2| (e_value=1e-161) PREDICTED: uncharacterized protein LOC100252035 [Vitis vinifera];; (*TAIR) AT1G73140.1 (e_value=7e-162) | Symbols: TBL31 | Plant protein of unknown function (DUF828) | chr1:27502133-27503743 REVERSE LENGTH=413;; (*ITAG) Solyc12g014200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5046350-5047894 transcript_region:SL2.40ch12:5046350..5047894+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00011011g0008.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|302142922|emb|CBI20217.3| (e_value=5e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73170.1 (e_value=2e-14) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27511722-27514783 REVERSE LENGTH=666; NbS00042659g0005.1 protein AED:0.03 eAED:0.03 QI:76|1|1|1|1|1|3|211|184; (*GB) gi|871489|emb|CAA58732.1| (e_value=7e-121) PAR-1c [Nicotiana tabacum];; (*TAIR) AT5G52390.1 (e_value=3e-71) | Symbols: | PAR1 protein | chr5:21264281-21265173 REVERSE LENGTH=195;; (*ITAG) Solyc03g025670.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:7490876-7492241 transcript_region:SL2.40ch03:7490876..7492241+ functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00037708g0001.1 protein AED:0.21 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|297737444|emb|CBI26645.3| (e_value=2e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G21970.1 (e_value=1e-27) | Symbols: | Protein of unknown function, DUF584 | chr4:11653633-11654106 FORWARD LENGTH=157;; (*ITAG) Solyc07g064650.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63932607-63933143 transcript_region:SL2.40ch07:63932607..63933143+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00026412g0015.1 protein AED:0.13 eAED:0.13 QI:158|0.57|0.62|1|0.57|0.62|8|293|223; (*GB) gi|224141741|ref|XP_002324223.1| (e_value=2e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84T68|EXOS5_ORYSJ (e_value=2e-95) Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica GN=RRP46 PE=1 SV=2;; (*TAIR) AT3G46210.6 (e_value=9e-120) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976960-16978489 REVERSE LENGTH=239;; (*ITAG) Solyc08g066700.2.1 (e_value=6e-141) genomic_reference:SL2.40ch08 gene_region:52731668-52737656 transcript_region:SL2.40ch08:52731668..52737656+ go_terms:GO:0005515 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- PNP_PROVI); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 "; GO:0005515 NbS00026412g0013.1 protein AED:0.22 eAED:0.23 QI:0|0.83|0.71|1|0.83|0.71|7|612|747; (*GB) gi|359473966|ref|XP_002272937.2| (e_value=0.0) PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Vitis vinifera];; (*SWP) sp|Q6EU10|MTA70_ORYSJ (e_value=0.0) Probable N6-adenosine-methyltransferase MT-A70-like OS=Oryza sativa subsp. japonica GN=Os02g0672600 PE=2 SV=1;; (*TAIR) AT4G10760.1 (e_value=0.0) | Symbols: EMB1706, MTA | mRNAadenosine methylase | chr4:6619947-6623312 REVERSE LENGTH=685;; (*ITAG) Solyc08g066730.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52759024-52767013 transcript_region:SL2.40ch08:52759024..52767013+ go_terms:GO:0005515,GO:0016422 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0005515,GO:0016422 NbS00026412g0018.1 protein AED:0.32 eAED:0.32 QI:209|1|0.6|1|0.5|0.8|5|0|340; (*GB) gi|225426625|ref|XP_002280860.1| (e_value=2e-175) PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera];; (*SWP) sp|Q921Y4|MFSD5_MOUSE (e_value=3e-48) Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1;; (*TAIR) AT4G27720.1 (e_value=1e-172) | Symbols: | Major facilitator superfamily protein | chr4:13831203-13833521 FORWARD LENGTH=460;; (*ITAG) Solyc08g066750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52771035-52775069 transcript_region:SL2.40ch08:52771035..52775069- functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00026412g0006.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|174; (*GB) gi|224053735|ref|XP_002297953.1| (e_value=1e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-21) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT1G64640.1 (e_value=5e-38) | Symbols: ENODL8, AtENODL8 | early nodulin-like protein 8 | chr1:24022482-24023151 REVERSE LENGTH=191;; (*ITAG) Solyc08g066740.2.1 (e_value=8e-75) genomic_reference:SL2.40ch08 gene_region:52767871-52768984 transcript_region:SL2.40ch08:52767871..52768984- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR02_SOLCI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00026412g0017.1 protein AED:0.45 eAED:0.45 QI:0|1|0.66|1|1|0.33|3|0|125; (*GB) gi|356516093|ref|XP_003526731.1| (e_value=1e-65) PREDICTED: major facilitator superfamily domain-containing protein 5-like isoform 1 [Glycine max];; (*TAIR) AT1G64650.1 (e_value=3e-68) | Symbols: | Major facilitator superfamily protein | chr1:24023805-24026336 REVERSE LENGTH=462;; (*ITAG) Solyc08g066750.2.1 (e_value=5e-79) genomic_reference:SL2.40ch08 gene_region:52771035-52775069 transcript_region:SL2.40ch08:52771035..52775069- functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00005537g0002.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|10|919|733; (*GB) gi|224067148|ref|XP_002302379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q06538|YL241_YEAST (e_value=1e-21) Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1;; (*TAIR) AT1G58520.1 (e_value=0.0) | Symbols: RXW8 | lipases;hydrolases, acting on ester bonds | chr1:21733543-21738165 FORWARD LENGTH=746;; (*ITAG) Solyc12g088230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62114857-62122490 transcript_region:SL2.40ch12:62114857..62122490- go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00026580g0002.1 protein AED:0.57 eAED:0.70 QI:0|0|0|0.6|1|1|5|0|197 NbS00050399g0007.1 protein AED:0.11 eAED:0.11 QI:85|1|1|1|0.8|0.87|16|335|741; (*GB) gi|297739262|emb|CBI28913.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=0.0) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc02g078780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37998577-38004947 transcript_region:SL2.40ch02:37998577..38004947+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00003638g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.6|1|1|1|5|122|373; (*GB) gi|24745919|dbj|BAC23043.1| (e_value=8e-127) pyruvate decarboxylase [Solanum tuberosum];; (*SWP) sp|P51850|PDC1_PEA (e_value=3e-115) Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1;; (*TAIR) AT5G01320.1 (e_value=6e-123) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr5:129484-131625 REVERSE LENGTH=603;; (*ITAG) Solyc09g005110.2.1 (e_value=5e-139) genomic_reference:SL2.40ch09 gene_region:64195-66676 transcript_region:SL2.40ch09:64195..66676- go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase 1 (AHRD V1 **** Q84V95_LOTCO); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00028821g0004.1 protein AED:0.01 eAED:0.01 QI:88|1|1|1|1|1|2|275|122; (*GB) gi|359477978|ref|XP_002264474.2| (e_value=1e-58) PREDICTED: dCTP pyrophosphatase 1-like [Vitis vinifera];; (*SWP) sp|Q91VC0|DCTP1_RAT (e_value=2e-28) dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1;; (*TAIR) AT3G25400.1 (e_value=1e-51) | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141;; (*ITAG) Solyc06g083130.2.1 (e_value=3e-58) genomic_reference:SL2.40ch06 gene_region:44962541-44964031 transcript_region:SL2.40ch06:44962541..44964031- go_terms:GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- C4ZJP2_THASP); contains Interpro domain(s) IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 "; GO:0047429 NbS00025565g0002.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|582; (*GB) gi|365222898|gb|AEW69801.1| (e_value=0.0) Hop-interacting protein THI039 [Solanum lycopersicum];; (*SWP) sp|Q69VG1|CIGR1_ORYSJ (e_value=0.0) Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=2e-176) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc12g005340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:211757-213433 transcript_region:SL2.40ch12:211757..213433- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00025565g0008.1 protein AED:0.37 eAED:0.37 QI:128|1|1|1|1|1|4|427|154; (*GB) gi|224115158|ref|XP_002316957.1| (e_value=7e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=2e-15) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G54580.1 (e_value=3e-46) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156;; (*ITAG) Solyc07g063900.2.1 (e_value=2e-59) genomic_reference:SL2.40ch07 gene_region:63466890-63470837 transcript_region:SL2.40ch07:63466890..63470837+ go_terms:GO:0008266 functional_description:"RNA binding protein (AHRD V1 **-* B6TNV4_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00056917g0001.1 protein AED:0.44 eAED:0.44 QI:30|-1|0|1|-1|1|1|72|34 NbS00056917g0003.1 protein AED:0.33 eAED:0.41 QI:0|0|0|1|0|0|2|0|184; (*GB) gi|359482327|ref|XP_003632755.1| (e_value=8e-66) PREDICTED: F-box/kelch-repeat protein At3g61590-like [Vitis vinifera];; (*ITAG) Solyc03g116480.1.1 (e_value=3e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59941068-59942174 transcript_region:SL2.40ch03:59941068..59942174+ functional_description:"F-box family protein (AHRD V1 **-- B9GZP5_POPTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00002058g0009.1 protein AED:0.04 eAED:0.04 QI:117|1|0.75|1|0.66|0.5|4|0|241; (*GB) gi|3914163|sp|Q42965.1|NRL4A_TOBAC (e_value=8e-134) RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A;; (*SWP) sp|Q42965|NRL4A_TOBAC (e_value=2e-135) Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1;; (*TAIR) AT5G22300.1 (e_value=3e-106) | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:7379401-7381764 FORWARD LENGTH=355;; (*ITAG) Solyc11g068730.1.1 (e_value=1e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50446387-50451004 transcript_region:SL2.40ch11:50446387..50451004- go_terms:GO:0016810,GO:0006807 functional_description:"Nitrilase 4A (AHRD V1 ***- Q5QGZ8_LUPAN); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0016810,GO:0006807 NbS00002058g0007.1 protein AED:0.25 eAED:0.25 QI:101|1|1|1|1|1|2|252|125; (*GB) gi|3914163|sp|Q42965.1|NRL4A_TOBAC (e_value=2e-68) RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A;; (*SWP) sp|Q42965|NRL4A_TOBAC (e_value=4e-70) Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1;; (*TAIR) AT5G22300.1 (e_value=6e-61) | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:7379401-7381764 FORWARD LENGTH=355;; (*ITAG) Solyc11g068730.1.1 (e_value=9e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50446387-50451004 transcript_region:SL2.40ch11:50446387..50451004- go_terms:GO:0016810,GO:0006807 functional_description:"Nitrilase 4A (AHRD V1 ***- Q5QGZ8_LUPAN); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0016810,GO:0006807 NbS00002058g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|0.5|1|1|2|193|179; (*GB) gi|75221395|sp|Q42966.1|NRL4B_TOBAC (e_value=7e-51) RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4B; Short=TNIT4B; AltName: Full=Cyanoalanine nitrilase B; AltName: Full=Nitrilase 4B;; (*SWP) sp|Q42966|NRL4B_TOBAC (e_value=2e-52) Bifunctional nitrilase/nitrile hydratase NIT4B OS=Nicotiana tabacum GN=NIT4B PE=2 SV=1;; (*TAIR) AT5G22300.1 (e_value=2e-48) | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:7379401-7381764 FORWARD LENGTH=355;; (*ITAG) Solyc11g068730.1.1 (e_value=2e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50446387-50451004 transcript_region:SL2.40ch11:50446387..50451004- go_terms:GO:0016810,GO:0006807 functional_description:"Nitrilase 4A (AHRD V1 ***- Q5QGZ8_LUPAN); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0016810,GO:0006807 NbS00017154g0014.1 protein AED:0.13 eAED:0.13 QI:238|1|0.8|1|0.75|0.6|5|0|513; (*GB) gi|224113165|ref|XP_002316412.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52170.2 (e_value=4e-35) | Symbols: | DNA binding | chr3:19347039-19349099 REVERSE LENGTH=499;; (*ITAG) Solyc11g007850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2066455-2070716 transcript_region:SL2.40ch11:2066455..2070716+ functional_description:"Plastid DNA-binding protein (Fragment) (AHRD V1 ***- Q5DW96_PRUYE)"; NbS00017154g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.92|0.86|1|0.71|0.73|15|0|1080; (*GB) gi|356533887|ref|XP_003535489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100779157 [Glycine max];; (*TAIR) AT5G04480.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:1271886-1277793 REVERSE LENGTH=1050;; (*ITAG) Solyc11g007840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2056744-2063954 transcript_region:SL2.40ch11:2056744..2063954+ go_terms:GO:0009058 functional_description:"Glycosyltransferase family protein 1 (AHRD V1 ***- D7M4Y0_ARALY); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00017154g0016.1 protein AED:0.41 eAED:0.41 QI:152|0.76|0.71|1|0.69|0.71|14|0|326; (*GB) gi|350535697|ref|NP_001233952.1| (e_value=0.0) protein tyrosine phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FEB5|DSP4_ARATH (e_value=4e-141) Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis thaliana GN=DSP4 PE=1 SV=1;; (*TAIR) AT3G52180.1 (e_value=3e-142) | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual specificity protein phosphatase (DsPTP1) family protein | chr3:19349884-19353459 REVERSE LENGTH=379;; (*ITAG) Solyc11g007830.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2048363-2053398 transcript_region:SL2.40ch11:2048363..2053398+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual-specificity protein-like phosphatase 3 (AHRD V1 ***- Q3S4H5_MAIZE); contains Interpro domain(s) IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00026233g0007.1 protein AED:0.23 eAED:0.23 QI:249|0.85|0.87|1|0.57|0.62|8|136|188; (*GB) gi|384081614|ref|NP_001244911.1| (e_value=2e-103) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 [Solanum lycopersicum];; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=8e-97) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.1 (e_value=6e-98) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215;; (*ITAG) Solyc10g084150.1.1 (e_value=4e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63129533-63133192 transcript_region:SL2.40ch10:63129533..63133192- functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00026233g0008.1 protein AED:0.63 eAED:0.84 QI:0|0.33|0|0.5|0.66|0.25|4|0|249; (*GB) gi|7705206|gb|AAB32591.2| (e_value=1e-14) MybSt1 [Solanum tuberosum];; (*ITAG) Solyc08g078340.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:59322077-59325106 transcript_region:SL2.40ch08:59322077..59325106+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q2A9C4_BRAOL); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00027841g0003.1 protein AED:0.31 eAED:0.31 QI:269|1|0.83|1|0.8|0.66|6|0|299; (*GB) gi|255582158|ref|XP_002531873.1| (e_value=1e-179) methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|A0LE04|FOLD_MAGSM (e_value=3e-95) Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1;; (*TAIR) AT3G12290.1 (e_value=1e-170) | Symbols: | Amino acid dehydrogenase family protein | chr3:3919591-3921326 FORWARD LENGTH=299;; (*ITAG) Solyc10g080970.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61467340-61472069 transcript_region:SL2.40ch10:61467340..61472069+ go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbC26018770g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|0|281; (*GB) gi|255580564|ref|XP_002531106.1| (e_value=1e-160) nutrient reservoir, putative [Ricinus communis];; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=1e-17) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT1G07750.1 (e_value=8e-162) | Symbols: | RmlC-like cupins superfamily protein | chr1:2404300-2405863 REVERSE LENGTH=356;; (*ITAG) Solyc11g073200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53332788-53334317 transcript_region:SL2.40ch11:53332788..53334317- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00032842g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|338; (*GB) gi|225432472|ref|XP_002277316.1| (e_value=3e-179) PREDICTED: S-adenosylmethionine decarboxylase proenzyme [Vitis vinifera];; (*SWP) sp|Q9AXE3|DCAM_DAUCA (e_value=1e-82) S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1;; (*TAIR) AT5G18930.1 (e_value=3e-139) | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarboxylase family protein | chr5:6312172-6313215 REVERSE LENGTH=347;; (*ITAG) Solyc01g080380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72135850-72136949 transcript_region:SL2.40ch01:72135850..72136949+ go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00015963g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|333; (*GB) gi|357446425|ref|XP_003593490.1| (e_value=1e-11) hypothetical protein MTR_2g012750 [Medicago truncatula];; (*ITAG) Solyc03g006600.1.1 (e_value=3e-102) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:1179806-1180825 transcript_region:SL2.40ch03:1179806..1180825- functional_description:"Unknown Protein (AHRD V1)"; NbS00031816g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|122; (*ITAG) Solyc06g011460.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00022296g0003.1 protein AED:0.01 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|157; (*GB) gi|225438139|ref|XP_002278457.1| (e_value=7e-63) PREDICTED: uncharacterized protein LOC100263547 [Vitis vinifera];; (*TAIR) AT2G20515.1 (e_value=6e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8839041-8839595 REVERSE LENGTH=155;; (*ITAG) Solyc06g083880.2.1 (e_value=4e-87) genomic_reference:SL2.40ch06 gene_region:45469905-45470712 transcript_region:SL2.40ch06:45469905..45470712- functional_description:"Unknown Protein (AHRD V1)"; NbS00037653g0005.1 protein AED:0.11 eAED:0.11 QI:1974|1|1|1|0.81|0.64|17|1750|493; (*GB) gi|225452522|ref|XP_002275112.1| (e_value=5e-144) PREDICTED: DNA repair protein UVH3-like [Vitis vinifera];; (*SWP) sp|Q9ATY5|UVH3_ARATH (e_value=5e-128) DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1;; (*TAIR) AT3G28030.1 (e_value=4e-129) | Symbols: UVH3, UVR1 | 5'-3' exonuclease family protein | chr3:10424321-10431178 FORWARD LENGTH=1479;; (*ITAG) Solyc02g067670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32380751-32389941 transcript_region:SL2.40ch02:32380751..32389941+ go_terms:GO:0005515,GO:0004518 functional_description:"Flap structure-specific endonuclease (AHRD V1 *--- A8NTE4_COPC7); contains Interpro domain(s) IPR001044 Xeroderma pigmentosum group G protein "; GO:0005515,GO:0004518 NbS00037653g0001.1 protein AED:0.09 eAED:0.09 QI:382|1|0.75|1|0.33|0.25|4|0|497; (*GB) gi|255552710|ref|XP_002517398.1| (e_value=1e-134) hypothetical protein RCOM_0852460 [Ricinus communis];; (*TAIR) AT5G14930.2 (e_value=1e-71) | Symbols: SAG101 | senescence-associated gene 101 | chr5:4828754-4830769 FORWARD LENGTH=537;; (*ITAG) Solyc02g067660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32373203-32376055 transcript_region:SL2.40ch02:32373203..32376055- go_terms:GO:0006629 functional_description:"Phytoalexin deficient 4 (Fragment) (AHRD V1 **-- B2BDV5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00037653g0028.1 protein AED:0.20 eAED:0.20 QI:10|0|0|1|0.5|0.33|3|0|355; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-65) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00037653g0012.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|57013893|ref|YP_173367.1| (e_value=6e-33) ribosomal protein S14 [Nicotiana tabacum];; (*SWP) sp|P49387|RT14_BRANA (e_value=6e-31) Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1;; (*TAIR) AT2G34520.1 (e_value=5e-27) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=2e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00037653g0027.1 protein AED:0.49 eAED:0.50 QI:0|0.33|0|0.57|0.66|0.57|7|0|251; (*GB) gi|365222890|gb|AEW69797.1| (e_value=2e-122) Hop-interacting protein THI034 [Solanum lycopersicum];; (*TAIR) AT3G01410.2 (e_value=1e-61) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:153650-155439 REVERSE LENGTH=294;; (*ITAG) Solyc02g087130.2.1 (e_value=3e-125) genomic_reference:SL2.40ch02 gene_region:44207285-44214013 transcript_region:SL2.40ch02:44207285..44214013+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- C3JIP8_RHOER); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00042085g0004.1 protein AED:0.63 eAED:0.67 QI:0|1|0|1|1|0.5|2|0|93; (*GB) gi|255579669|ref|XP_002530674.1| (e_value=2e-29) endomembrane protein emp70, putative [Ricinus communis];; (*TAIR) AT1G10950.1 (e_value=6e-26) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc01g103930.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:84168402-84175175 transcript_region:SL2.40ch01:84168402..84175175- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00046735g0005.1 protein AED:0.18 eAED:0.32 QI:29|0|0|1|0.66|0.25|4|0|267; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-81) hypothetical protein [Nicotiana tabacum]; NbS00046735g0002.1 protein AED:0.62 eAED:0.86 QI:0|0|0|0.75|1|1|4|0|75 NbS00030454g0001.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|532; (*GB) gi|297738492|emb|CBI27737.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M088|E135_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT5G20870.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:7080037-7081739 REVERSE LENGTH=501;; (*ITAG) Solyc07g017730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7882255-7885616 transcript_region:SL2.40ch07:7882255..7885616+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SWD3_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00030454g0012.1 protein AED:0.19 eAED:0.19 QI:435|1|1|1|0.8|1|6|290|346; (*GB) gi|225444574|ref|XP_002277240.1| (e_value=2e-119) PREDICTED: uncharacterized protein LOC100261032 [Vitis vinifera];; (*TAIR) AT4G33140.1 (e_value=1e-106) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:15981648-15984135 FORWARD LENGTH=353;; (*ITAG) Solyc07g017700.1.1 (e_value=6e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:7742456-7743612 transcript_region:SL2.40ch07:7742456..7743612- functional_description:"Uncharacterized conserved protein (AHRD V1 ***- A5CYZ3_PELTS)"; NbS00030454g0016.1 protein AED:0.28 eAED:0.30 QI:295|0.87|0.84|1|0.79|0.72|25|0|1019; (*GB) gi|255550269|ref|XP_002516185.1| (e_value=0.0) aminoadipic semialdehyde synthase, putative [Ricinus communis];; (*SWP) sp|Q9SMZ4|AASS_ARATH (e_value=0.0) Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH PE=1 SV=1;; (*TAIR) AT4G33150.2 (e_value=0.0) | Symbols: | lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme | chr4:15985479-15991069 REVERSE LENGTH=1064;; (*ITAG) Solyc07g017610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7668445-7680370 transcript_region:SL2.40ch07:7668445..7680370+ go_terms:GO:0047131 functional_description:"Saccharopine dehydrogenase (NAD(+) L-glutamate-forming) (AHRD V1 *-** C7PUW7_CHIPD); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0047131 NbS00024398g0005.1 protein AED:0.25 eAED:0.26 QI:0|0.36|0.33|0.91|0.36|0.33|12|0|597; (*GB) gi|356559110|ref|XP_003547844.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Glycine max];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=2e-77) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT1G79620.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc10g085670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64098873-64104331 transcript_region:SL2.40ch10:64098873..64104331- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00035620g0011.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|1|1|2|0|193; (*GB) gi|255574300|ref|XP_002528064.1| (e_value=7e-26) TRANSPARENT TESTA 12 protein, putative [Ricinus communis];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=1e-17) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT1G71140.1 (e_value=6e-25) | Symbols: | MATE efflux family protein | chr1:26824762-26826748 FORWARD LENGTH=485;; (*ITAG) Solyc02g063270.2.1 (e_value=1e-40) genomic_reference:SL2.40ch02 gene_region:29907935-29911147 transcript_region:SL2.40ch02:29907935..29911147- go_terms:GO:0015559 functional_description:"Multidrug and toxin extrusion protein 1 (AHRD V1 **-- S47A1_MOUSE); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00035620g0012.1 protein AED:0.20 eAED:0.20 QI:1003|0.28|0.62|1|0.14|0.37|8|202|273; (*ITAG) Solyc02g091030.2.1 (e_value=1e-48) genomic_reference:SL2.40ch02 gene_region:47044186-47052491 transcript_region:SL2.40ch02:47044186..47052491+ go_terms:GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit C-2 (AHRD V1 *-*- B4FWZ1_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00035620g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|124 NbS00061453g0011.1 protein AED:0.04 eAED:0.09 QI:0|0.4|0.16|0.83|0.6|0.5|6|0|743; (*GB) gi|224125030|ref|XP_002319485.1| (e_value=4e-168) histidine kinase cytokinin receptor [Populus trichocarpa];; (*SWP) sp|O22267|CKI1_ARATH (e_value=9e-121) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=7e-122) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=8e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00061453g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|4|0|179; (*GB) gi|224125034|ref|XP_002319486.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGG8|USPAL_ARATH (e_value=1e-13) Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2;; (*TAIR) AT3G62550.1 (e_value=1e-49) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:23136194-23137074 FORWARD LENGTH=162;; (*ITAG) Solyc01g100370.2.1 (e_value=8e-102) genomic_reference:SL2.40ch01 gene_region:82186051-82188666 transcript_region:SL2.40ch01:82186051..82188666+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B6SNQ1_MAIZE); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00061453g0010.1 protein AED:0.23 eAED:0.65 QI:21|1|0|1|1|1|2|0|295; (*GB) gi|224125030|ref|XP_002319485.1| (e_value=3e-58) histidine kinase cytokinin receptor [Populus trichocarpa];; (*SWP) sp|O22267|CKI1_ARATH (e_value=2e-23) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=1e-24) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122; NbS00009159g0003.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|163; (*GB) gi|356510059|ref|XP_003523758.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100783686 [Glycine max];; (*TAIR) AT5G11700.2 (e_value=2e-34) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=1e-46) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbC25621840g0003.1 protein AED:0.36 eAED:0.58 QI:0|0.66|0.25|1|1|1|4|0|78; (*GB) gi|224102025|ref|XP_002312515.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g005230.2.1 (e_value=5e-35) genomic_reference:SL2.40ch08 gene_region:144167-150496 transcript_region:SL2.40ch08:144167..150496+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00035594g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.57|0.62|1|1|1|8|294|373; (*GB) gi|225459370|ref|XP_002284234.1| (e_value=2e-101) PREDICTED: low affinity sulfate transporter 3-like [Vitis vinifera];; (*SWP) sp|P53393|SUT3_STYHA (e_value=3e-99) Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1;; (*TAIR) AT5G10180.1 (e_value=5e-97) | Symbols: AST68, SULTR2;1 | slufate transporter 2;1 | chr5:3193225-3196818 FORWARD LENGTH=677;; (*ITAG) Solyc12g056920.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48337813-48342321 transcript_region:SL2.40ch12:48337813..48342321- go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- A7YGI3_POPCN); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0016020,GO:0016021 NbS00001075g0012.1 protein AED:0.07 eAED:0.07 QI:559|1|1|1|0.5|0.42|7|306|525; (*GB) gi|147862096|emb|CAN80884.1| (e_value=4e-85) hypothetical protein VITISV_018653 [Vitis vinifera];; (*SWP) sp|Q9C690|BH122_ARATH (e_value=7e-41) Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1;; (*TAIR) AT1G51140.1 (e_value=6e-42) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943802-18945613 REVERSE LENGTH=379;; (*ITAG) Solyc12g100140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65321959-65324680 transcript_region:SL2.40ch12:65321959..65324680+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00001075g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|255563004|ref|XP_002522506.1| (e_value=2e-39) Transcription elongation factor, putative [Ricinus communis];; (*SWP) sp|Q8LHP0|ELOF1_ORYSJ (e_value=2e-39) Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1;; (*TAIR) AT5G46030.1 (e_value=1e-36) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120;; (*ITAG) Solyc02g077440.2.1 (e_value=7e-35) genomic_reference:SL2.40ch02 gene_region:36959365-36961353 transcript_region:SL2.40ch02:36959365..36961353+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbS00001075g0014.1 protein AED:0.15 eAED:0.15 QI:165|1|1|1|0.5|0.66|3|299|227; (*GB) gi|15220443|ref|NP_172011.1| (e_value=8e-119) 50S ribosomal protein L6 [Arabidopsis thaliana];; (*SWP) sp|O23049|RK6_ARATH (e_value=2e-120) 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1;; (*TAIR) AT1G05190.1 (e_value=2e-121) | Symbols: emb2394 | Ribosomal protein L6 family | chr1:1502515-1503738 REVERSE LENGTH=223;; (*ITAG) Solyc12g100160.1.1 (e_value=3e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65330773-65334942 transcript_region:SL2.40ch12:65330773..65334942+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- B6SL57_MAIZE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00001075g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.54|0.41|0.91|1|1|12|133|554; (*GB) gi|20522008|dbj|BAB92011.1| (e_value=0.0) pleiotropic drug resistance like protein [Nicotiana tabacum];; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc12g100180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65339306-65345848 transcript_region:SL2.40ch12:65339306..65345848+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00001075g0103.1 protein AED:0.12 eAED:0.12 QI:22|0.88|0.88|1|1|1|18|284|1402 NbS00001075g0211.1 protein AED:0.30 eAED:0.34 QI:0|0|0|0.57|1|1|7|0|343 NbS00001075g0208.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|8|190|608 NbS00054622g0007.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0|0|2|54|160; (*GB) gi|109289919|gb|AAP45172.2| (e_value=6e-85) hypothetical protein SBB1_14t00021 [Solanum bulbocastanum];; (*ITAG) Solyc08g075950.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57194678-57198271 transcript_region:SL2.40ch08:57194678..57198271- go_terms:GO:0005634 functional_description:"Growth-regulating factor 3 (AHRD V1 **-- B9VHC2_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00054622g0003.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|1|1|3|0|269; (*GB) gi|109289919|gb|AAP45172.2| (e_value=1e-88) hypothetical protein SBB1_14t00021 [Solanum bulbocastanum];; (*TAIR) AT3G13960.1 (e_value=1e-44) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc08g075950.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57194678-57198271 transcript_region:SL2.40ch08:57194678..57198271- go_terms:GO:0005634 functional_description:"Growth-regulating factor 3 (AHRD V1 **-- B9VHC2_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00054622g0008.1 protein AED:0.48 eAED:0.50 QI:0|0|0|1|0|0|2|0|61; (*GB) gi|255558115|ref|XP_002520086.1| (e_value=3e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G22840.1 (e_value=1e-24) | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530;; (*ITAG) Solyc08g075950.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57194678-57198271 transcript_region:SL2.40ch08:57194678..57198271- go_terms:GO:0005634 functional_description:"Growth-regulating factor 3 (AHRD V1 **-- B9VHC2_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00003797g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|852; (*GB) gi|225463207|ref|XP_002267970.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490-like [Vitis vinifera];; (*SWP) sp|Q9FNN9|PP370_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1;; (*TAIR) AT5G08490.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2745208-2747757 REVERSE LENGTH=849;; (*ITAG) Solyc10g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:80360-83196 transcript_region:SL2.40ch10:80360..83196- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M1C9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003797g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|722; (*GB) gi|225453650|ref|XP_002267720.1| (e_value=2e-173) PREDICTED: protein LHY-like [Vitis vinifera];; (*SWP) sp|Q6R0H1|LHY_ARATH (e_value=1e-43) Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2;; (*TAIR) AT1G01060.4 (e_value=7e-45) | Symbols: LHY, LHY1 | Homeodomain-like superfamily protein | chr1:33992-37061 REVERSE LENGTH=644;; (*ITAG) Solyc10g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:59310-79441 transcript_region:SL2.40ch10:59310..79441+ go_terms:GO:0005515,GO:0003700 functional_description:"Late elongated hypocotyl and circadian clock associated-1-like"; GO:0005515,GO:0003700 NbS00034600g0011.1 protein AED:0.34 eAED:0.36 QI:0|0.63|0.5|0.85|0.57|0.7|20|0|858; (*GB) gi|42569377|ref|NP_180289.3| (e_value=0.0) serine/threonine-protein phosphatase BSL3 [Arabidopsis thaliana];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc06g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00034600g0001.1 protein AED:0.33 eAED:0.56 QI:0|0.37|0.22|0.77|1|1|9|0|442; (*GB) gi|365222948|gb|AEW69826.1| (e_value=4e-132) Hop-interacting protein THI140 [Solanum lycopersicum];; (*SWP) sp|Q9SJF0|BSL2_ARATH (e_value=4e-128) Serine/threonine-protein phosphatase BSL2 OS=Arabidopsis thaliana GN=BSL2 PE=1 SV=2;; (*TAIR) AT1G08420.1 (e_value=3e-129) | Symbols: BSL2 | BRI1 suppressor 1 (BSU1)-like 2 | chr1:2649959-2656564 FORWARD LENGTH=1018;; (*ITAG) Solyc06g073960.2.1 (e_value=3e-157) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00030633g0001.1 protein AED:0.16 eAED:0.20 QI:1694|0|0.33|1|1|1|3|0|344; (*ITAG) Solyc09g091490.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66106316-66112605 transcript_region:SL2.40ch09:66106316..66112605- go_terms:GO:0032454,GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbS00048573g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|1|1|2|127|482; (*GB) gi|225440642|ref|XP_002279091.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate acyltransferase 6 [Vitis vinifera];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=0.0) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc09g014350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5900240-5903588 transcript_region:SL2.40ch09:5900240..5903588- go_terms:GO:0003841 functional_description:"Glycerol-3-phosphate acyltransferase 6 (AHRD V1 **** D7LKT2_ARALY); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00025983g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|66; (*ITAG) Solyc05g053520.2.1 (e_value=6e-20) genomic_reference:SL2.40ch05 gene_region:62745217-62746978 transcript_region:SL2.40ch05:62745217..62746978+ go_terms:GO:0003887 functional_description:"DNA polymerase delta subunit 4 family (AHRD V1 **** D7KJU8_ARALY); contains Interpro domain(s) IPR007218 DNA polymerase delta, subunit 4 "; GO:0003887 NbS00025983g0004.1 protein AED:0.24 eAED:0.24 QI:12|1|0.66|1|1|1|3|47|109; (*ITAG) Solyc12g098140.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64106597-64107733 transcript_region:SL2.40ch12:64106597..64107733+ functional_description:"Unknown Protein (AHRD V1)"; NbC24534377g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|113; (*GB) gi|297741556|emb|CBI32688.3| (e_value=6e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g007340.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00031218g0012.1 protein AED:0.11 eAED:0.11 QI:21|0.88|0.7|1|0.55|0.5|10|407|656; (*GB) gi|359492027|ref|XP_002282806.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=8e-111) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc04g078810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61065866-61070598 transcript_region:SL2.40ch04:61065866..61070598- functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00031218g0011.1 protein AED:0.24 eAED:0.25 QI:6|0|0|1|0|0|4|0|253; (*GB) gi|255538276|ref|XP_002510203.1| (e_value=7e-70) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT1G45201.1 (e_value=2e-62) | Symbols: ATTLL1, TLL1 | triacylglycerol lipase-like 1 | chr1:17123889-17128462 FORWARD LENGTH=479;; (*ITAG) Solyc04g078800.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:61062738-61065481 transcript_region:SL2.40ch04:61062738..61065481+ go_terms:GO:0006629 functional_description:"Lipase class 3-like (AHRD V1 ***- Q6Z307_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00018134g0017.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|0.66|0.75|4|462|127; (*GB) gi|326516234|dbj|BAJ88140.1| (e_value=6e-68) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q94FB9|AB1D_ARATH (e_value=4e-63) ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1;; (*TAIR) AT4G39850.2 (e_value=3e-64) | Symbols: PXA1 | peroxisomal ABC transporter 1 | chr4:18489220-18496762 FORWARD LENGTH=1338;; (*ITAG) Solyc04g055120.2.1 (e_value=4e-77) genomic_reference:SL2.40ch04 gene_region:52885883-52906641 transcript_region:SL2.40ch04:52885883..52906641+ go_terms:GO:0042626 functional_description:"Uncharacterized ABC transporter ATP-binding protein sll0182 (AHRD V1 *-*- Y182_SYNY3); contains Interpro domain(s) IPR010509 ABC transporter, N-terminal "; GO:0042626 NbS00018134g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|255580866|ref|XP_002531252.1| (e_value=9e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G65030.1 (e_value=8e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25975697-25976305 REVERSE LENGTH=202;; (*ITAG) Solyc04g055140.1.1 (e_value=2e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:52916550-52916957 transcript_region:SL2.40ch04:52916550..52916957+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018134g0014.1 protein AED:0.16 eAED:0.18 QI:87|0.87|0.70|1|0.75|0.82|17|22|997; (*GB) gi|224083701|ref|XP_002307090.1| (e_value=0.0) peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa];; (*SWP) sp|Q94FB9|AB1D_ARATH (e_value=0.0) ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1;; (*TAIR) AT4G39850.3 (e_value=0.0) | Symbols: PXA1 | peroxisomal ABC transporter 1 | chr4:18489220-18496762 FORWARD LENGTH=1352;; (*ITAG) Solyc04g055120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52885883-52906641 transcript_region:SL2.40ch04:52885883..52906641+ go_terms:GO:0042626 functional_description:"Uncharacterized ABC transporter ATP-binding protein sll0182 (AHRD V1 *-*- Y182_SYNY3); contains Interpro domain(s) IPR010509 ABC transporter, N-terminal "; GO:0042626 NbS00018134g0001.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0|1|1|1|3|0|565; (*GB) gi|255584994|ref|XP_002533208.1| (e_value=0.0) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*TAIR) AT5G10200.1 (e_value=0.0) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:3202378-3204367 FORWARD LENGTH=631;; (*ITAG) Solyc04g055110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52858243-52872403 transcript_region:SL2.40ch04:52858243..52872403+ go_terms:GO:0005488 functional_description:"Mitochondrial import receptor subunit TOM34 (AHRD V1 *--- TOM34_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00018134g0013.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|0|0|2|0|105; (*GB) gi|255549548|ref|XP_002515826.1| (e_value=2e-42) peroxisomal abc transporter, putative [Ricinus communis];; (*SWP) sp|Q94FB9|AB1D_ARATH (e_value=1e-37) ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1;; (*TAIR) AT4G39850.3 (e_value=9e-39) | Symbols: PXA1 | peroxisomal ABC transporter 1 | chr4:18489220-18496762 FORWARD LENGTH=1352;; (*ITAG) Solyc04g055120.2.1 (e_value=4e-52) genomic_reference:SL2.40ch04 gene_region:52885883-52906641 transcript_region:SL2.40ch04:52885883..52906641+ go_terms:GO:0042626 functional_description:"Uncharacterized ABC transporter ATP-binding protein sll0182 (AHRD V1 *-*- Y182_SYNY3); contains Interpro domain(s) IPR010509 ABC transporter, N-terminal "; GO:0042626 NbS00018134g0005.1 protein AED:0.38 eAED:0.38 QI:0|0|0.5|1|0|0.5|2|565|82; (*GB) gi|147828299|emb|CAN77716.1| (e_value=6e-35) hypothetical protein VITISV_023407 [Vitis vinifera];; (*TAIR) AT5G10200.1 (e_value=1e-17) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:3202378-3204367 FORWARD LENGTH=631;; (*ITAG) Solyc04g055110.2.1 (e_value=2e-45) genomic_reference:SL2.40ch04 gene_region:52858243-52872403 transcript_region:SL2.40ch04:52858243..52872403+ go_terms:GO:0005488 functional_description:"Mitochondrial import receptor subunit TOM34 (AHRD V1 *--- TOM34_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00004916g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0|0|3|0|732; (*GB) gi|225432412|ref|XP_002276957.1| (e_value=1e-179) PREDICTED: uncharacterized protein LOC100244334 [Vitis vinifera];; (*SWP) sp|Q9NXW2|DJB12_HUMAN (e_value=2e-14) DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4;; (*TAIR) AT3G04980.1 (e_value=9e-96) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1378684-1382181 REVERSE LENGTH=1165;; (*ITAG) Solyc08g029220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:23450959-23453328 transcript_region:SL2.40ch08:23450959..23453328- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00004916g0002.1 protein AED:0.32 eAED:0.32 QI:0|1|0.9|1|1|1|10|0|529; (*GB) gi|224122988|ref|XP_002318966.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc08g041890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00007170g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0|1|0.66|0.75|4|0|487; (*GB) gi|5002354|gb|AAD37433.1|AF150881_1 (e_value=0.0) ferulate-5-hydroxylase [Solanum lycopersicum x Solanum peruvianum];; (*SWP) sp|Q42600|C84A1_ARATH (e_value=0.0) Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1;; (*TAIR) AT4G36220.1 (e_value=0.0) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc02g084570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42225222-42229073 transcript_region:SL2.40ch02:42225222..42229073- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00048840g0001.1 protein AED:0.29 eAED:0.32 QI:15|0.16|0.57|1|1|1|7|361|231; (*GB) gi|350537577|ref|NP_001234811.1| (e_value=3e-102) ubiquitin activating enzyme [Solanum lycopersicum];; (*SWP) sp|P0DI13|SA1B2_ARATH (e_value=9e-90) SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana GN=SAE1B-2 PE=2 SV=1;; (*TAIR) AT5G50680.2 (e_value=4e-91) | Symbols: ATSAE1B, SAE1B | SUMO activating enzyme 1B | chr5:20618842-20620743 FORWARD LENGTH=318;; (*ITAG) Solyc03g019730.2.1 (e_value=5e-122) genomic_reference:SL2.40ch03 gene_region:6670321-6676255 transcript_region:SL2.40ch03:6670321..6676255- go_terms:GO:0019948 functional_description:"Sumo activating enzyme 1b (AHRD V1 **** D7MQ99_ARALY); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019948 NbS00061130g0004.1 protein AED:0.02 eAED:0.02 QI:171|1|1|1|1|1|2|233|142; (*GB) gi|118481894|gb|ABK92882.1| (e_value=2e-68) unknown [Populus trichocarpa];; (*SWP) sp|O49453|Y4844_ARATH (e_value=1e-55) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT2G33845.1 (e_value=1e-62) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:14317781-14318712 FORWARD LENGTH=182;; (*ITAG) Solyc02g077740.2.1 (e_value=4e-62) genomic_reference:SL2.40ch02 gene_region:37189312-37191744 transcript_region:SL2.40ch02:37189312..37191744- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbC26100965g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|455; (*GB) gi|345104047|gb|AEN70845.1| (e_value=0.0) calcineurin B-like protein-interacting protein kinase [Gossypium schwendimanii];; (*SWP) sp|Q9LEU7|CIPK5_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 5 OS=Arabidopsis thaliana GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G10930.1 (e_value=0.0) | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein kinase 5 | chr5:3445569-3446906 REVERSE LENGTH=445;; (*ITAG) Solyc08g067310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53594242-53595603 transcript_region:SL2.40ch08:53594242..53595603+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 6 (AHRD V1 ***- A0MNL4_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00030709g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|92; (*TAIR) AT2G30200.2 (e_value=8e-16) | Symbols: | catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | chr2:12883340-12885482 REVERSE LENGTH=369;; (*ITAG) Solyc01g006980.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:1552093-1555934 transcript_region:SL2.40ch01:1552093..1555934+ go_terms:GO:0008152,GO:0006633 functional_description:"Malonyl CoA-acyl carrier protein transacylase containing protein expressed (AHRD V1 ***- Q10MS3_ORYSJ); contains Interpro domain(s) IPR004410 Malonyl CoA-acyl carrier protein transacylase "; GO:0008152,GO:0006633 NbS00039031g0001.1 protein AED:0.41 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|134; (*GB) gi|255572587|ref|XP_002527227.1| (e_value=3e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g063380.1.1 (e_value=1e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:30047158-30047472 transcript_region:SL2.40ch02:30047158..30047472- functional_description:"Unknown Protein (AHRD V1)"; NbS00029881g0013.1 protein AED:0.38 eAED:0.38 QI:79|1|1|1|0.5|0.66|3|453|143; (*GB) gi|359806563|ref|NP_001241009.1| (e_value=3e-70) uncharacterized protein LOC100812176 [Glycine max];; (*SWP) sp|Q8K2Y7|RM47_MOUSE (e_value=2e-15) 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=2 SV=2;; (*TAIR) AT1G07830.1 (e_value=1e-66) | Symbols: | ribosomal protein L29 family protein | chr1:2422549-2423392 FORWARD LENGTH=144;; (*ITAG) Solyc03g114050.2.1 (e_value=8e-83) genomic_reference:SL2.40ch03 gene_region:58143215-58150353 transcript_region:SL2.40ch03:58143215..58150353+ go_terms:GO:0005840,GO:0005761 functional_description:"54S ribosomal protein L4 mitochondrial (AHRD V1 *-*- C8UZV4_EMENI); contains Interpro domain(s) IPR010729 Ribosomal protein L47, mitochondrial "; GO:0005840,GO:0005761 NbS00029881g0017.1 protein AED:0.11 eAED:0.17 QI:0|0.18|0.08|1|0.45|0.41|12|0|1285; (*GB) gi|224069068|ref|XP_002302892.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23277|PRD1_ARATH (e_value=7e-169) Protein PRD1 OS=Arabidopsis thaliana GN=PRD1 PE=1 SV=3;; (*TAIR) AT4G14180.1 (e_value=5e-148) | Symbols: AtPRD1, PRD1 | putative recombination initiation defect 1 | chr4:8178330-8183515 FORWARD LENGTH=1268;; (*ITAG) Solyc03g114040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58135420-58141886 transcript_region:SL2.40ch03:58135420..58141886- go_terms:GO:0042803 functional_description:"Os04g0347800 protein (Fragment) (AHRD V1 *-*- Q0JE06_ORYSJ)"; GO:0042803 NbS00029576g0004.1 protein AED:0.20 eAED:0.29 QI:440|0.33|0.25|1|0.33|0.75|4|0|51 NbS00014068g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|561; (*GB) gi|255544892|ref|XP_002513507.1| (e_value=0.0) 2-oxoglutarate/malate translocator, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q41364|SOT1_SPIOL (e_value=0.0) 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1;; (*TAIR) AT5G12860.1 (e_value=0.0) | Symbols: DiT1 | dicarboxylate transporter 1 | chr5:4059927-4061919 REVERSE LENGTH=557;; (*ITAG) Solyc11g065830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48480319-48483811 transcript_region:SL2.40ch11:48480319..48483811- go_terms:GO:0016020 functional_description:"2-oxoglutarate/malate translocator-like protein (AHRD V1 **-- Q9LXV3_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0016020 NbS00030273g0007.1 protein AED:0.08 eAED:0.08 QI:110|1|1|1|0.75|0.8|5|98|485; (*GB) gi|255551567|ref|XP_002516829.1| (e_value=0.0) hydrolase, putative [Ricinus communis];; (*TAIR) AT3G21530.1 (e_value=2e-163) | Symbols: | DNAse I-like superfamily protein | chr3:7582828-7584448 REVERSE LENGTH=458;; (*ITAG) Solyc01g080480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72223108-72225205 transcript_region:SL2.40ch01:72223108..72225205+ functional_description:"Endonuclease/exonuclease/phosphatase family protein (AHRD V1 ***- D7L0T9_ARALY); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00030273g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.75|1|0.66|0.75|4|497|220; (*GB) gi|385276436|gb|AFI57511.1| (e_value=9e-151) NEP-TC [Solanum betaceum];; (*TAIR) AT4G15520.1 (e_value=9e-119) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:8862829-8864366 FORWARD LENGTH=222;; (*ITAG) Solyc01g080470.2.1 (e_value=6e-152) genomic_reference:SL2.40ch01 gene_region:72218392-72222088 transcript_region:SL2.40ch01:72218392..72222088+ go_terms:GO:0006396 functional_description:"tRNA (Guanosine-2&apos-O)-methyltransferase (AHRD V1 ***- D2TIV2_CITRI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00028626g0005.1 protein AED:0.36 eAED:0.51 QI:0|0.37|0.11|0.77|0.37|0.44|9|0|310; (*GB) gi|297734910|emb|CBI17144.3| (e_value=1e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G04320.2 (e_value=2e-15) | Symbols: | Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470;; (*ITAG) Solyc11g008090.1.1 (e_value=8e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2288710-2290634 transcript_region:SL2.40ch11:2288710..2290634- functional_description:"Shugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)"; NbS00019319g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|255585350|ref|XP_002533372.1| (e_value=6e-37) cysteinyl-tRNA synthetase, putative [Ricinus communis];; (*TAIR) AT5G38830.1 (e_value=6e-33) | Symbols: | Cysteinyl-tRNA synthetase, class Ia family protein | chr5:15545764-15548094 REVERSE LENGTH=511;; (*ITAG) Solyc05g009190.2.1 (e_value=1e-41) genomic_reference:SL2.40ch05 gene_region:3328877-3333922 transcript_region:SL2.40ch05:3328877..3333922- go_terms:GO:0004817 functional_description:"Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia "; GO:0004817 NbS00019319g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|255536811|ref|XP_002509472.1| (e_value=1e-72) Dehydration-responsive protein RD22 precursor, putative [Ricinus communis];; (*SWP) sp|Q942D4|BURP3_ORYSJ (e_value=1e-36) BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1;; (*TAIR) AT1G49320.1 (e_value=6e-44) | Symbols: ATUSPL1, USPL1 | unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280;; (*ITAG) Solyc01g109500.2.1 (e_value=3e-98) genomic_reference:SL2.40ch01 gene_region:88187324-88189158 transcript_region:SL2.40ch01:88187324..88189158- functional_description:"BURP domain-containing protein (AHRD V1 *--- B2ZPK5_SOLTU); contains Interpro domain(s) IPR004873 BURP "; NbS00000791g0005.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|205|91; (*GB) gi|225459050|ref|XP_002285635.1| (e_value=4e-27) PREDICTED: uncharacterized protein C6C3.02c [Vitis vinifera];; (*TAIR) AT5G09570.1 (e_value=2e-22) | Symbols: | Cox19-like CHCH family protein | chr5:2970733-2971970 FORWARD LENGTH=139;; (*ITAG) Solyc04g076600.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:59089730-59091260 transcript_region:SL2.40ch04:59089730..59091260+ go_terms:GO:0005515 functional_description:"p8MTCP1 (AHRD V1 ***- B6TKB9_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0005515 NbS00000791g0008.1 protein AED:0.40 eAED:0.40 QI:370|0.8|0.66|1|0.6|0.33|6|0|189; (*GB) gi|77416967|gb|ABA81879.1| (e_value=6e-102) unknown [Solanum tuberosum];; (*SWP) sp|Q9D3R9|TAF7L_MOUSE (e_value=1e-19) Transcription initiation factor TFIID subunit 7-like OS=Mus musculus GN=Taf7l PE=1 SV=2;; (*TAIR) AT1G55300.1 (e_value=3e-73) | Symbols: TAF7 | TBP-associated factor 7 | chr1:20628170-20629490 REVERSE LENGTH=203;; (*ITAG) Solyc04g076580.2.1 (e_value=4e-69) genomic_reference:SL2.40ch04 gene_region:59077313-59087935 transcript_region:SL2.40ch04:59077313..59087935+ go_terms:GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 7 (AHRD V1 ***- B6UGL3_MAIZE); contains Interpro domain(s) IPR006751 TAFII55 protein conserved region "; GO:0005669 NbS00023434g0013.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.5|1|0.66|0.5|4|1265|279; (*GB) gi|255551438|ref|XP_002516765.1| (e_value=6e-45) wall-associated kinase, putative [Ricinus communis];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-13) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38260.1 (e_value=3e-22) | Symbols: | Protein kinase superfamily protein | chr5:15283692-15285837 REVERSE LENGTH=638;; (*ITAG) Solyc02g086210.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:43522473-43524974 transcript_region:SL2.40ch02:43522473..43524974- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023434g0012.1 protein AED:0.36 eAED:0.37 QI:47|0.66|0.57|1|0.66|0.71|7|0|378; (*GB) gi|225452099|ref|XP_002284149.1| (e_value=0.0) PREDICTED: abhydrolase domain-containing protein FAM108B1 [Vitis vinifera];; (*SWP) sp|Q6DEY3|F108B_XENTR (e_value=2e-78) Abhydrolase domain-containing protein FAM108B1 OS=Xenopus tropicalis GN=fam108b1 PE=2 SV=1;; (*TAIR) AT5G38220.3 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15269012-15271140 FORWARD LENGTH=336;; (*ITAG) Solyc02g086220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43525934-43531719 transcript_region:SL2.40ch02:43525934..43531719- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00023434g0011.1 protein AED:0.43 eAED:0.43 QI:0|0.2|0.18|0.27|1|0.90|11|0|418; (*GB) gi|225452088|ref|XP_002280704.1| (e_value=8e-89) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LF10|CRS1_ARATH (e_value=6e-77) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2;; (*TAIR) AT5G16180.1 (e_value=4e-78) | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast splicing factor CRS1 | chr5:5279884-5282898 FORWARD LENGTH=720;; (*ITAG) Solyc02g086200.1.1 (e_value=2e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43514319-43520365 transcript_region:SL2.40ch02:43514319..43520365+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 ***- CRS1_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00024030g0002.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|331; (*GB) gi|147774253|emb|CAN76952.1| (e_value=1e-37) hypothetical protein VITISV_040518 [Vitis vinifera];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=6e-34) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=4e-35) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc02g087570.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44545431-44545802 transcript_region:SL2.40ch02:44545431..44545802- go_terms:GO:0005515 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00014029g0005.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|2|0|728; (*GB) gi|225440005|ref|XP_002276355.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Vitis vinifera];; (*SWP) sp|Q9ZUU3|PP190_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1;; (*TAIR) AT2G37230.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15637177-15639450 REVERSE LENGTH=757;; (*ITAG) Solyc12g019290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9915770-9917965 transcript_region:SL2.40ch12:9915770..9917965+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJQ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014029g0006.1 protein AED:0.64 eAED:0.89 QI:0|0|0|0.5|1|1|4|0|105; (*GB) gi|225449012|ref|XP_002273747.1| (e_value=2e-29) PREDICTED: probable lysine-specific demethylase ELF6-like [Vitis vinifera];; (*SWP) sp|Q6BDA0|ELF6_ARATH (e_value=3e-25) Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1;; (*TAIR) AT5G04240.1 (e_value=2e-26) | Symbols: ELF6 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340;; (*ITAG) Solyc04g028580.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:28635070-28636110 transcript_region:SL2.40ch04:28635070..28636110- functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; NbS00014029g0009.1 protein AED:0.22 eAED:0.22 QI:71|0.5|0.36|0.90|0.5|0.45|11|0|367; (*GB) gi|5931761|emb|CAB56614.1| (e_value=0.0) acetolactate synthase small subunit [Nicotiana plumbaginifolia];; (*SWP) sp|Q9TLY1|ILVH_CYACA (e_value=6e-39) Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1;; (*TAIR) AT2G31810.3 (e_value=2e-143) | Symbols: | ACT domain-containing small subunit of acetolactate synthase protein | chr2:13524271-13528246 FORWARD LENGTH=469;; (*ITAG) Solyc12g019310.1.1 (e_value=5e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9942632-9953856 transcript_region:SL2.40ch12:9942632..9953856- go_terms:GO:0003984,GO:0030234 functional_description:"Acetolactate synthase small subunit (AHRD V1 **** Q9SMC2_NICPL); contains Interpro domain(s) IPR004789 Acetolactate synthase, small subunit "; GO:0003984,GO:0030234 NbS00060809g0001.1 protein AED:0.20 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|121; (*GB) gi|111073727|dbj|BAF02552.1| (e_value=1e-48) hypothetical protein [Nicotiana benthamiana];; (*SWP) sp|Q9SVC6|PUB22_ARATH (e_value=5e-27) E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1;; (*TAIR) AT3G52450.1 (e_value=4e-28) | Symbols: PUB22 | plant U-box 22 | chr3:19440943-19442250 REVERSE LENGTH=435;; (*ITAG) Solyc01g009320.1.1 (e_value=9e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3500773-3502283 transcript_region:SL2.40ch01:3500773..3502283- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbC23586865g0001.1 protein AED:0.00 eAED:0.00 QI:53|1|1|1|0|0|2|0|35; (*ITAG) Solyc08g074370.2.1 (e_value=8e-20) genomic_reference:SL2.40ch08 gene_region:55653575-55662343 transcript_region:SL2.40ch08:55653575..55662343- go_terms:GO:0005515,GO:0000166 functional_description:"DDB1- and CUL4-associated factor homolog 1 (AHRD V1 **-- DCAF1_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00014393g0001.1 protein AED:0.23 eAED:0.24 QI:356|1|0.5|1|0|0|2|0|267; (*GB) gi|356494910|ref|XP_003516324.1| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100796991 [Glycine max];; (*TAIR) AT1G69330.1 (e_value=3e-94) | Symbols: | RING/U-box superfamily protein | chr1:26064138-26064950 REVERSE LENGTH=270;; (*ITAG) Solyc01g011030.2.1 (e_value=4e-155) genomic_reference:SL2.40ch01 gene_region:6995399-6996636 transcript_region:SL2.40ch01:6995399..6996636+ go_terms:GO:0004842 functional_description:"RING zinc finger protein-like (AHRD V1 **-- B6SSZ2_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00014393g0007.1 protein AED:0.31 eAED:0.31 QI:269|1|1|1|0.7|0.72|11|462|331; (*GB) gi|225423495|ref|XP_002269214.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera];; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=1e-36) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT5G61240.1 (e_value=2e-175) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:24629485-24631958 FORWARD LENGTH=326;; (*ITAG) Solyc01g011040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:7002577-7009509 transcript_region:SL2.40ch01:7002577..7009509- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbC25957502g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|529; (*GB) gi|30387023|emb|CAD89798.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|O82811|NRT21_ARATH (e_value=0.0) High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1;; (*TAIR) AT1G08090.1 (e_value=0.0) | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524139-2525920 FORWARD LENGTH=530;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00021420g0001.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|1|1|2|0|310; (*GB) gi|224073422|ref|XP_002304093.1| (e_value=1e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=1e-21) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT1G74170.1 (e_value=9e-44) | Symbols: AtRLP13, RLP13 | receptor like protein 13 | chr1:27891555-27895441 REVERSE LENGTH=1000;; (*ITAG) Solyc04g014400.2.1 (e_value=6e-142) genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00021420g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|224113693|ref|XP_002332513.1| (e_value=6e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SHI3|RLP2_ARATH (e_value=4e-24) Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1;; (*TAIR) AT5G49290.1 (e_value=5e-48) | Symbols: ATRLP56, RLP56 | receptor like protein 56 | chr5:19980195-19983869 FORWARD LENGTH=908;; (*ITAG) Solyc04g014400.2.1 (e_value=6e-85) genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00048842g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|334; (*GB) gi|225447472|ref|XP_002266988.1| (e_value=5e-142) PREDICTED: uncharacterized protein LOC100249414 [Vitis vinifera];; (*TAIR) AT2G04220.1 (e_value=2e-133) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc03g121220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63430340-63431673 transcript_region:SL2.40ch03:63430340..63431673+ functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00048842g0004.1 protein AED:0.64 eAED:0.64 QI:0|0|0|1|0|0|2|0|72 NbS00003883g0012.1 protein AED:0.02 eAED:0.02 QI:109|1|1|1|1|1|4|245|354; (*GB) gi|224141201|ref|XP_002323963.1| (e_value=5e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=5e-55) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT2G36690.1 (e_value=9e-75) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc08g006770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1336526-1338769 transcript_region:SL2.40ch08:1336526..1338769- go_terms:GO:0045431 functional_description:"Anthocyanidin synthase (Fragment) (AHRD V1 **-* P93120_DIACA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00003883g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0.2|0.6|1|1|5|44|173; (*ITAG) Solyc08g006760.2.1 (e_value=4e-50) genomic_reference:SL2.40ch08 gene_region:1330546-1333159 transcript_region:SL2.40ch08:1330546..1333159- functional_description:"Unknown Protein (AHRD V1)"; NbS00003883g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|229; (*GB) gi|255581771|ref|XP_002531687.1| (e_value=1e-70) Tyramine N-feruloyltransferase 4/11, putative [Ricinus communis];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=1e-56) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39020.1 (e_value=5e-65) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16295392-16296102 FORWARD LENGTH=236;; (*ITAG) Solyc00g272810.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:20641054-20641779 transcript_region:SL2.40ch00:20641054..20641779- go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00003883g0016.1 protein AED:0.44 eAED:0.51 QI:0|0|0|1|1|1|3|0|61 NbS00000077g0004.1 protein AED:0.21 eAED:0.21 QI:132|0.92|1|1|0.76|0.78|14|247|501; (*GB) gi|356538244|ref|XP_003537614.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max];; (*SWP) sp|Q5EBA1|SUV3_RAT (e_value=3e-96) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus GN=Supv3l1 PE=2 SV=1;; (*TAIR) AT4G14790.1 (e_value=0.0) | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase, mitochondrial (SUV3) | chr4:8496351-8499829 REVERSE LENGTH=571;; (*ITAG) Solyc09g082380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63534872-63547345 transcript_region:SL2.40ch09:63534872..63547345+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q10D00_ORYSJ); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00016651g0003.1 protein AED:0.26 eAED:0.38 QI:0|0|0|0.6|0.5|0.4|5|0|156; (*ITAG) Solyc10g049480.1.1 (e_value=3e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00017771g0002.1 protein AED:0.26 eAED:0.33 QI:0|0|0|1|0|0|6|0|323; (*GB) gi|190607481|gb|ACE79403.1| (e_value=2e-84) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-37) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=1e-28) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc08g074250.1.1 (e_value=7e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55526270-55528885 transcript_region:SL2.40ch08:55526270..55528885- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00017771g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|3|0|110; (*ITAG) Solyc04g012010.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:4349137-4352103 transcript_region:SL2.40ch04:4349137..4352103+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00054729g0004.1 protein AED:0.01 eAED:0.01 QI:117|1|0.5|1|1|1|2|107|229; (*GB) gi|225444734|ref|XP_002278077.1| (e_value=8e-33) PREDICTED: uncharacterized protein LOC100264608 [Vitis vinifera];; (*TAIR) AT3G43850.1 (e_value=1e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15702085-15704152 REVERSE LENGTH=270;; (*ITAG) Solyc07g041830.2.1 (e_value=1e-65) genomic_reference:SL2.40ch07 gene_region:51493841-51498122 transcript_region:SL2.40ch07:51493841..51498122+ functional_description:"MTD1 (AHRD V1 *-*- Q9LLM3_MEDTR)"; NbC25618522g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|4|0|182; (*ITAG) Solyc01g073870.2.1 (e_value=4e-33) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00026155g0001.1 protein AED:0.02 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|327; (*ITAG) Solyc07g056370.2.1 (e_value=4e-103) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00026155g0010.1 protein AED:0.43 eAED:0.43 QI:51|0|0.5|0.5|0|0|2|170|47 NbS00026155g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|297; (*GB) gi|90656516|gb|ABD96607.1| (e_value=0.0) xyloglucan endotransglucosylase XET1 [Capsicum annuum];; (*SWP) sp|Q38911|XTH15_ARATH (e_value=1e-128) Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1;; (*TAIR) AT4G14130.1 (e_value=8e-130) | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase 15 | chr4:8137161-8138196 REVERSE LENGTH=289;; (*ITAG) Solyc07g056000.2.1 (e_value=1e-180) genomic_reference:SL2.40ch07 gene_region:61225049-61226324 transcript_region:SL2.40ch07:61225049..61226324+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 **** C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase IPR008263 Glycoside hydrolase, family 16, active site "; GO:0016798 NbS00004842g0017.1 protein AED:0.03 eAED:0.03 QI:0|0.33|0|1|1|1|4|0|451; (*GB) gi|224134212|ref|XP_002321764.1| (e_value=4e-162) predicted protein [Populus trichocarpa];; (*TAIR) AT5G61820.1 (e_value=2e-139) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc12g042380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43016137-43018348 transcript_region:SL2.40ch12:43016137..43018348+ functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00004842g0003.1 protein AED:0.27 eAED:0.27 QI:282|0.83|0.85|1|1|1|7|292|475; (*GB) gi|24370975|emb|CAA70968.2| (e_value=0.0) amino acid transporter [Solanum tuberosum];; (*SWP) sp|P92934|AAP6_ARATH (e_value=0.0) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=0.0) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc04g077050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00004842g0004.1 protein AED:0.19 eAED:0.20 QI:178|0.87|0.77|1|0.87|0.77|9|64|684; (*GB) gi|225458964|ref|XP_002283591.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=5e-21) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT1G51580.1 (e_value=6e-56) | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621;; (*ITAG) Solyc04g077060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59615562-59620233 transcript_region:SL2.40ch04:59615562..59620233- go_terms:GO:0003676 functional_description:"KH domain-containing protein (AHRD V1 **-- D7KHT7_ARALY); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00038345g0011.1 protein AED:0.18 eAED:0.19 QI:216|0.42|0.37|1|0.57|0.5|8|0|548; (*GB) gi|13560977|gb|AAK30294.1|AF353207_1 (e_value=0.0) beta-amylase [Castanea crenata];; (*SWP) sp|P10538|AMYB_SOYBN (e_value=0.0) Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3;; (*TAIR) AT2G32290.1 (e_value=0.0) | Symbols: BMY5, BAM6 | beta-amylase 6 | chr2:13714643-13716906 REVERSE LENGTH=577;; (*ITAG) Solyc07g052690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58467382-58471454 transcript_region:SL2.40ch07:58467382..58471454+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q9AT14_CASCR); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00038345g0012.1 protein AED:0.34 eAED:0.34 QI:0|0.57|0.75|1|0.42|0.62|8|65|172; (*GB) gi|147807337|emb|CAN77533.1| (e_value=4e-30) hypothetical protein VITISV_009173 [Vitis vinifera];; (*TAIR) AT2G22630.1 (e_value=5e-13) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc07g052700.2.1 (e_value=8e-37) genomic_reference:SL2.40ch07 gene_region:58484194-58486576 transcript_region:SL2.40ch07:58484194..58486576+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00038345g0003.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.25|1|1|4|0|75 NbS00006867g0009.1 protein AED:0.09 eAED:0.13 QI:15|1|0|1|0|0|2|0|688; (*GB) gi|255565935|ref|XP_002523956.1| (e_value=5e-170) RAB6-interacting protein, putative [Ricinus communis];; (*TAIR) AT5G58320.2 (e_value=3e-66) | Symbols: | Kinase interacting (KIP1-like) family protein | chr5:23577728-23579641 FORWARD LENGTH=558;; (*ITAG) Solyc08g077680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58750403-58754684 transcript_region:SL2.40ch08:58750403..58754684- functional_description:"Kinase interacting protein 1-like (AHRD V1 *-*- Q9AS78_ORYSJ); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00006867g0008.1 protein AED:0.16 eAED:0.16 QI:210|1|1|1|1|1|14|706|560; (*GB) gi|225434327|ref|XP_002266157.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera];; (*SWP) sp|P19109|DDX17_DROME (e_value=2e-101) ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3;; (*TAIR) AT1G55150.1 (e_value=3e-98) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501;; (*ITAG) Solyc09g015930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:11381642-11399733 transcript_region:SL2.40ch09:11381642..11399733+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** D3TRA6_GLOMM); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00021298g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|774; (*GB) gi|225434622|ref|XP_002279360.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82380|PP175_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=0.0) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00021298g0015.1 protein AED:0.11 eAED:0.11 QI:72|0.86|0.93|1|0.8|0.93|16|109|543; (*GB) gi|297745925|emb|CBI15981.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O89033|CDC6_MOUSE (e_value=6e-49) Cell division control protein 6 homolog OS=Mus musculus GN=Cdc6 PE=2 SV=2;; (*TAIR) AT2G29680.2 (e_value=0.0) | Symbols: CDC6, ATCDC6 | cell division control 6 | chr2:12689586-12692854 FORWARD LENGTH=508;; (*ITAG) Solyc06g076860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44152891-44159926 transcript_region:SL2.40ch06:44152891..44159926+ go_terms:GO:0005515,GO:0003682 functional_description:"Cell division control protein 6 homolog (AHRD V1 **-- CDC6_MOUSE); contains Interpro domain(s) IPR016314 Cell division control, Cdc6 "; GO:0005515,GO:0003682 NbS00021298g0007.1 protein AED:0.10 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|356501146|ref|XP_003519389.1| (e_value=4e-63) PREDICTED: pleckstrin homology domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=2e-54) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT5G05710.1 (e_value=5e-59) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144;; (*ITAG) Solyc06g076890.1.1 (e_value=4e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44169059-44169493 transcript_region:SL2.40ch06:44169059..44169493+ go_terms:GO:0035091 functional_description:"Pleckstrin homology domain-containing protein 1 (AHRD V1 **-- B6UCM9_MAIZE); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00021298g0016.1 protein AED:0.20 eAED:0.20 QI:178|1|1|1|0.75|0.8|5|341|158; (*GB) gi|351723663|ref|NP_001236519.1| (e_value=2e-103) uncharacterized protein LOC100306544 [Glycine max];; (*SWP) sp|Q9CQ48|NUDC2_MOUSE (e_value=2e-23) NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1;; (*TAIR) AT5G58740.1 (e_value=1e-103) | Symbols: | HSP20-like chaperones superfamily protein | chr5:23725936-23727528 REVERSE LENGTH=158;; (*ITAG) Solyc06g076940.2.1 (e_value=8e-115) genomic_reference:SL2.40ch06 gene_region:44208852-44212836 transcript_region:SL2.40ch06:44208852..44212836+ functional_description:"NudC domain-containing protein 2 (AHRD V1 ***- B6T1R3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00021298g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|1|2|2491|441; (*GB) gi|297818964|ref|XP_002877365.1| (e_value=3e-107) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|C0LGT6|EFR_ARATH (e_value=3e-105) LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1;; (*TAIR) AT5G20480.1 (e_value=2e-106) | Symbols: EFR | EF-TU receptor | chr5:6922497-6925679 FORWARD LENGTH=1031;; (*ITAG) Solyc06g076910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44176311-44180041 transcript_region:SL2.40ch06:44176311..44180041- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00021298g0017.1 protein AED:0.08 eAED:0.18 QI:0|0.5|0.33|1|0.5|0.66|3|222|197; (*GB) gi|255569309|ref|XP_002525622.1| (e_value=4e-64) 60S acidic ribosomal protein P0, putative [Ricinus communis];; (*SWP) sp|Q42112|RLA02_ARATH (e_value=6e-64) 60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2;; (*TAIR) AT3G09200.1 (e_value=4e-65) | Symbols: | Ribosomal protein L10 family protein | chr3:2823364-2825020 REVERSE LENGTH=320;; (*ITAG) Solyc06g076870.2.1 (e_value=8e-73) genomic_reference:SL2.40ch06 gene_region:44160488-44162942 transcript_region:SL2.40ch06:44160488..44162942- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7LEE5_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00006363g0003.1 protein AED:0.02 eAED:0.02 QI:266|1|0.85|1|0.66|0.42|7|439|369; (*GB) gi|359474536|ref|XP_002278005.2| (e_value=2e-103) PREDICTED: probable transcription factor KAN2-like [Vitis vinifera];; (*SWP) sp|Q9C616|KAN2_ARATH (e_value=1e-60) Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1;; (*TAIR) AT1G32240.1 (e_value=1e-61) | Symbols: KAN2 | Homeodomain-like superfamily protein | chr1:11625882-11630355 REVERSE LENGTH=388;; (*ITAG) Solyc08g005260.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:174641-179270 transcript_region:SL2.40ch08:174641..179270- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like protein (AHRD V1 *--- Q84UP8_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00020802g0222.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|0.5|2|0|161 NbS00020802g0220.1 protein AED:0.16 eAED:0.16 QI:0|0.16|0|1|0.5|0.42|7|0|381 NbS00020802g0223.1 protein AED:0.35 eAED:0.37 QI:30|0|0|1|0.5|0.33|3|0|380 NbS00020802g0221.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|119 NbS00002358g0010.1 protein AED:0.21 eAED:0.22 QI:0|0.71|0.53|0.86|0.85|0.73|15|0|1022; (*GB) gi|359478673|ref|XP_002281895.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267264 [Vitis vinifera];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=4e-46) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=0.0) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc06g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:204148-210621 transcript_region:SL2.40ch06:204148..210621+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00002358g0006.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|83 NbS00002358g0009.1 protein AED:0.18 eAED:0.18 QI:271|0.77|0.7|0.9|0.88|0.9|10|485|340; (*GB) gi|1389654|dbj|BAA12918.1| (e_value=5e-98) cytosolic ascorbate peroxidase [Nicotiana tabacum];; (*SWP) sp|P48534|APX1_PEA (e_value=5e-86) L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2;; (*TAIR) AT1G07890.8 (e_value=2e-84) | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate peroxidase 1 | chr1:2438005-2439435 FORWARD LENGTH=250;; (*ITAG) Solyc06g005150.2.1 (e_value=8e-93) genomic_reference:SL2.40ch06 gene_region:170218-173338 transcript_region:SL2.40ch06:170218..173338- go_terms:GO:0055114 functional_description:"Ascorbate peroxidase (AHRD V1 ***- Q52QQ4_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00027914g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|225435979|ref|XP_002271597.1| (e_value=2e-124) PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera];; (*SWP) sp|Q8GWZ6|SRR1_ARATH (e_value=1e-92) Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2;; (*TAIR) AT5G59560.2 (e_value=1e-93) | Symbols: SRR1 | sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275;; (*ITAG) Solyc11g005260.1.1 (e_value=2e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:219201-221453 transcript_region:SL2.40ch11:219201..221453+ functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 **-- Q4PRK8_ARATH); contains Interpro domain(s) IPR012942 SRR1 "; NbS00000214g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.9|1|0.66|0.6|10|199|327; (*GB) gi|224099887|ref|XP_002311660.1| (e_value=1e-128) magnesium transporter [Populus trichocarpa];; (*SWP) sp|B8AJT9|MRS2I_ORYSI (e_value=3e-125) Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1;; (*TAIR) AT5G64560.1 (e_value=3e-115) | Symbols: MGT9, MRS2-2, ATMGT9 | magnesium transporter 9 | chr5:25807025-25809395 REVERSE LENGTH=394;; (*ITAG) Solyc09g065920.2.1 (e_value=2e-180) genomic_reference:SL2.40ch09 gene_region:59804797-59809555 transcript_region:SL2.40ch09:59804797..59809555+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-I (AHRD V1 **** MRS2I_ORYSJ); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00020409g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|393; (*GB) gi|255538432|ref|XP_002510281.1| (e_value=3e-152) Protein Z, putative [Ricinus communis];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=1e-140) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=8e-142) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079470.2.1 (e_value=3e-169) genomic_reference:SL2.40ch04 gene_region:61541595-61543506 transcript_region:SL2.40ch04:61541595..61543506- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00020409g0009.1 protein AED:0.24 eAED:0.26 QI:0|0.33|0|1|0.33|0|4|0|490; (*GB) gi|255538432|ref|XP_002510281.1| (e_value=6e-170) Protein Z, putative [Ricinus communis];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=1e-147) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=1e-148) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61536285-61539279 transcript_region:SL2.40ch04:61536285..61539279- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00032582g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|224120802|ref|XP_002330955.1| (e_value=3e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|P52839|SOT12_ARATH (e_value=1e-49) Cytosolic sulfotransferase 12 OS=Arabidopsis thaliana GN=SOT12 PE=1 SV=2;; (*TAIR) AT2G03760.1 (e_value=8e-51) | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12, SOT12 | sulphotransferase 12 | chr2:1149475-1150455 REVERSE LENGTH=326;; (*ITAG) Solyc04g028380.1.1 (e_value=9e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:27186032-27186979 transcript_region:SL2.40ch04:27186032..27186979+ go_terms:GO:0080118 functional_description:"Sulfotransferase 5b (AHRD V1 **** C5H9Q0_BRARP); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00039788g0005.1 protein AED:0.38 eAED:0.38 QI:96|1|1|1|1|1|2|271|83 NbS00039788g0008.1 protein AED:0.40 eAED:0.40 QI:0|1|0.66|1|1|1|3|0|114; (*GB) gi|225464930|ref|XP_002275103.1| (e_value=5e-22) PREDICTED: uncharacterized protein At2g27730, mitochondrial isoform 3 [Vitis vinifera];; (*ITAG) Solyc11g068510.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50296679-50298229 transcript_region:SL2.40ch11:50296679..50298229+ functional_description:"F1F0-ATPase inhibitor protein (AHRD V1 ***- D7LJ04_ARALY)"; NbS00048855g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|359806182|ref|NP_001241201.1| (e_value=2e-151) probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like precursor [Glycine max];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=3e-24) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT2G15320.1 (e_value=5e-142) | Symbols: | Leucine-rich repeat (LRR) family protein | chr2:6666527-6667675 REVERSE LENGTH=382;; (*ITAG) Solyc01g107670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86899262-86900658 transcript_region:SL2.40ch01:86899262..86900658- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00016819g0006.1 protein AED:0.36 eAED:0.36 QI:206|0.62|0.66|0.88|0.62|0.66|9|418|246; (*GB) gi|152206078|gb|ABS30424.1| (e_value=4e-123) cyclophilin-like protein [Nicotiana tabacum];; (*SWP) sp|Q9SP02|CP20A_ARATH (e_value=7e-109) Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1;; (*TAIR) AT5G58710.1 (e_value=5e-110) | Symbols: ROC7 | rotamase CYP 7 | chr5:23717840-23719495 FORWARD LENGTH=204;; (*ITAG) Solyc06g076970.2.1 (e_value=3e-122) genomic_reference:SL2.40ch06 gene_region:44223388-44227200 transcript_region:SL2.40ch06:44223388..44227200- go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** B2BF99_TOBAC); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00019196g0005.1 protein AED:0.10 eAED:0.10 QI:164|0.8|0.83|1|1|1|6|427|346; (*GB) gi|255539034|ref|XP_002510582.1| (e_value=0.0) alcohol dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=1e-164) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT4G39330.1 (e_value=5e-128) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc02g069250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33766134-33768061 transcript_region:SL2.40ch02:33766134..33768061- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** A9PHZ1_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00019196g0001.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|226320289|gb|ACO48262.1| (e_value=5e-39) acyltransferase [Capsicum chacoense];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=6e-20) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=3e-23) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc02g081760.1.1 (e_value=5e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40162825-40164247 transcript_region:SL2.40ch02:40162825..40164247+ go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00001152g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.25|0.8|1|0.5|0.6|5|103|316; (*GB) gi|147781705|emb|CAN67054.1| (e_value=1e-99) hypothetical protein VITISV_035706 [Vitis vinifera];; (*TAIR) AT5G57770.1 (e_value=8e-73) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr5:23401094-23403112 REVERSE LENGTH=406;; (*ITAG) Solyc07g006320.2.1 (e_value=3e-155) genomic_reference:SL2.40ch07 gene_region:1142842-1146191 transcript_region:SL2.40ch07:1142842..1146191+ functional_description:"Genomic DNA chromosome 5 P1 clone MRI1 (AHRD V1 *-*- Q9FHG6_ARATH); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; NbS00001152g0011.1 protein AED:0.16 eAED:0.16 QI:159|0.8|0.83|1|0.6|0.33|6|491|404; (*GB) gi|147833290|emb|CAN70801.1| (e_value=0.0) hypothetical protein VITISV_008053 [Vitis vinifera];; (*SWP) sp|Q9JJQ0|PIGB_MOUSE (e_value=7e-66) GPI mannosyltransferase 3 OS=Mus musculus GN=Pigb PE=1 SV=2;; (*TAIR) AT5G14850.1 (e_value=1e-161) | Symbols: | Alg9-like mannosyltransferase family | chr5:4802099-4804977 REVERSE LENGTH=548;; (*ITAG) Solyc07g006330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1147728-1151824 transcript_region:SL2.40ch07:1147728..1151824- go_terms:GO:0004169,GO:0004584 functional_description:"Dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase-like (AHRD V1 **** Q656F1_ORYSJ); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0004169,GO:0004584 NbS00001152g0009.1 protein AED:0.33 eAED:0.33 QI:55|0.8|0.66|1|1|1|6|0|286; (*GB) gi|225445718|ref|XP_002270456.1| (e_value=1e-93) PREDICTED: uncharacterized protein LOC100246646 [Vitis vinifera];; (*TAIR) AT4G28030.1 (e_value=1e-86) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:13937748-13939131 REVERSE LENGTH=274;; (*ITAG) Solyc07g006340.2.1 (e_value=6e-137) genomic_reference:SL2.40ch07 gene_region:1152548-1156100 transcript_region:SL2.40ch07:1152548..1156100- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase-like (AHRD V1 ***- Q84S80_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00020267g0005.1 protein AED:0.29 eAED:0.38 QI:0|0|0|1|0|0.16|6|0|227; (*GB) gi|255573143|ref|XP_002527501.1| (e_value=4e-40) signal transducer, putative [Ricinus communis];; (*SWP) sp|O80970|NPY2_ARATH (e_value=1e-15) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=8e-17) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=2e-62) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00020267g0001.1 protein AED:0.42 eAED:0.77 QI:0|-1|0|1|-1|1|1|0|95 NbS00020267g0002.1 protein AED:0.59 eAED:0.68 QI:65|-1|0|1|-1|0|1|0|58; (*GB) gi|356536111|ref|XP_003536583.1| (e_value=9e-19) PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max];; (*SWP) sp|Q0WL52|NPY5_ARATH (e_value=6e-17) BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2;; (*TAIR) AT4G37590.1 (e_value=4e-18) | Symbols: NPY5 | Phototropic-responsive NPH3 family protein | chr4:17663080-17665299 REVERSE LENGTH=580;; (*ITAG) Solyc01g107180.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00022004g0016.1 protein AED:0.05 eAED:0.05 QI:154|1|1|1|0.33|0.25|4|628|587; (*GB) gi|11994546|dbj|BAB02733.1| (e_value=2e-73) transposase-like protein [Arabidopsis thaliana];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=2e-41) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=7e-57) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc08g075140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56461709-56463324 transcript_region:SL2.40ch08:56461709..56463324+ go_terms:GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0046983 NbS00022004g0004.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|225427631|ref|XP_002269914.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100252848 [Vitis vinifera];; (*TAIR) AT5G45320.1 (e_value=8e-44) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18362354-18363053 REVERSE LENGTH=198;; (*ITAG) Solyc08g075230.1.1 (e_value=2e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56515261-56515857 transcript_region:SL2.40ch08:56515261..56515857- functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 ***- Q9FKU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00022004g0021.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0.5|4|0|254; (*GB) gi|225427637|ref|XP_002272974.1| (e_value=2e-44) PREDICTED: uncharacterized protein LOC100256375 [Vitis vinifera];; (*TAIR) AT5G45310.1 (e_value=2e-15) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18359373-18360796 REVERSE LENGTH=352;; (*ITAG) Solyc08g075150.2.1 (e_value=3e-78) genomic_reference:SL2.40ch08 gene_region:56464526-56467946 transcript_region:SL2.40ch08:56464526..56467946- functional_description:"Genomic DNA chromosome 5 TAC clone K9E15 (AHRD V1 *-*- Q9FH79_ARATH)"; NbS00022004g0020.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|0.77|0.7|10|296|590; (*GB) gi|225445919|ref|XP_002263344.1| (e_value=2e-142) PREDICTED: uncharacterized protein LOC100263330 [Vitis vinifera];; (*SWP) sp|Q9Y4W2|LAS1L_HUMAN (e_value=1e-16) Ribosomal biogenesis protein LAS1L OS=Homo sapiens GN=LAS1L PE=1 SV=2;; (*TAIR) AT5G12220.1 (e_value=3e-95) | Symbols: | las1-like family protein | chr5:3950218-3953014 FORWARD LENGTH=611;; (*ITAG) Solyc07g045370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55797882-55805983 transcript_region:SL2.40ch07:55797882..55805983- functional_description:"Las1-like family protein expressed (AHRD V1 ***- Q2QWN0_ORYSJ); contains Interpro domain(s) IPR007174 Las1-like "; NbS00054989g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|253; (*GB) gi|255562176|ref|XP_002522096.1| (e_value=2e-50) protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G44380.1 (e_value=8e-40) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073800.2.1 (e_value=1e-107) genomic_reference:SL2.40ch01 gene_region:70406076-70406992 transcript_region:SL2.40ch01:70406076..70406992- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; NbS00004619g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|0|0.25|4|0|336; (*GB) gi|256274567|gb|ACU68503.1| (e_value=3e-108) WOX3 protein [Petunia x hybrida];; (*SWP) sp|Q9SIB4|WOX3_ARATH (e_value=3e-37) WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2 SV=1;; (*TAIR) AT2G28610.1 (e_value=2e-38) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072790.1.1 (e_value=4e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53074783-53075974 transcript_region:SL2.40ch11:53074783..53075974+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00008790g0007.1 protein AED:0.06 eAED:0.06 QI:342|0.5|0.8|1|0.25|0.4|5|401|448; (*GB) gi|225454807|ref|XP_002274300.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Vitis vinifera];; (*SWP) sp|P0C043|PP318_ARATH (e_value=5e-170) Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1;; (*TAIR) AT5G46680.1 (e_value=1e-155) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:18941118-18942524 FORWARD LENGTH=468;; (*ITAG) Solyc07g055220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60656922-60658304 transcript_region:SL2.40ch07:60656922..60658304- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRB7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008790g0023.1 protein AED:0.10 eAED:0.16 QI:0|0|0|1|0.16|0.14|7|0|580; (*GB) gi|224111934|ref|XP_002332866.1| (e_value=5e-129) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FID6|Y5392_ARATH (e_value=1e-89) Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1;; (*TAIR) AT1G66920.2 (e_value=5e-108) | Symbols: | Protein kinase superfamily protein | chr1:24965410-24967432 REVERSE LENGTH=617;; (*ITAG) Solyc02g086210.2.1 (e_value=2e-155) genomic_reference:SL2.40ch02 gene_region:43522473-43524974 transcript_region:SL2.40ch02:43522473..43524974- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008790g0020.1 protein AED:0.12 eAED:0.17 QI:164|0.8|0.63|1|0.5|0.54|11|0|895; (*GB) gi|225452088|ref|XP_002280704.1| (e_value=0.0) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LF10|CRS1_ARATH (e_value=0.0) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2;; (*TAIR) AT5G16180.1 (e_value=0.0) | Symbols: CRS1, ATCRS1 | ortholog of maize chloroplast splicing factor CRS1 | chr5:5279884-5282898 FORWARD LENGTH=720;; (*ITAG) Solyc02g086200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43514319-43520365 transcript_region:SL2.40ch02:43514319..43520365+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 ***- CRS1_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00008790g0019.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|0.66|3|0|270; (*GB) gi|33301670|sp|Q9ZT29.1|SC5D_TOBAC (e_value=0.0) RecName: Full=Delta(7)-sterol-C5(6)-desaturase; AltName: Full=Delta(7)-sterol-C5-desaturase; AltName: Full=Delta-7-C-5 sterol desaturase;; (*SWP) sp|Q9ZT29|SC5D_TOBAC (e_value=0.0) Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G02580.1 (e_value=4e-162) | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:547048-548615 FORWARD LENGTH=281;; (*ITAG) Solyc02g086180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43503863-43506392 transcript_region:SL2.40ch02:43503863..43506392+ go_terms:GO:0000248 functional_description:"Sterol C-5 desaturase (AHRD V1 **** D7FW86_ECTSI); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000248 NbS00008790g0021.1 protein AED:0.39 eAED:0.40 QI:0|1|0.33|1|1|1|3|0|228; (*GB) gi|296087256|emb|CBI33630.3| (e_value=3e-135) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5ZJX1|F108C_CHICK (e_value=3e-51) Abhydrolase domain-containing protein FAM108C1 OS=Gallus gallus GN=FAM108C1 PE=2 SV=1;; (*TAIR) AT5G38220.3 (e_value=6e-117) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15269012-15271140 FORWARD LENGTH=336;; (*ITAG) Solyc02g086220.2.1 (e_value=6e-144) genomic_reference:SL2.40ch02 gene_region:43525934-43531719 transcript_region:SL2.40ch02:43525934..43531719- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00008790g0008.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225452099|ref|XP_002284149.1| (e_value=2e-43) PREDICTED: abhydrolase domain-containing protein FAM108B1 [Vitis vinifera];; (*TAIR) AT1G66900.1 (e_value=1e-41) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:24959552-24961255 FORWARD LENGTH=272;; (*ITAG) Solyc02g086220.2.1 (e_value=1e-48) genomic_reference:SL2.40ch02 gene_region:43525934-43531719 transcript_region:SL2.40ch02:43525934..43531719- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00008790g0022.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|0|0|2|0|70 NbS00026817g0004.1 protein AED:0.02 eAED:0.02 QI:916|0.75|0.8|1|0.25|0.2|5|493|275; (*GB) gi|224083468|ref|XP_002307039.1| (e_value=1e-163) predicted protein [Populus trichocarpa];; (*TAIR) AT5G20680.2 (e_value=6e-145) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6999221-7001596 FORWARD LENGTH=533;; (*ITAG) Solyc07g008820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3780001-3785309 transcript_region:SL2.40ch07:3780001..3785309+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026817g0019.1 protein AED:0.28 eAED:0.29 QI:175|0|0.5|1|0|0|2|0|143; (*GB) gi|688423|dbj|BAA05470.1| (e_value=9e-53) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii];; (*TAIR) AT3G14880.2 (e_value=2e-20) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5006565-5007689 FORWARD LENGTH=237;; (*ITAG) Solyc05g056410.1.1 (e_value=4e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64865548-64866369 transcript_region:SL2.40ch05:64865548..64866369- functional_description:"BZIP transcription factor (AHRD V1 *-*- Q8W5R8_ORYSA)"; NbS00026817g0018.1 protein AED:0.02 eAED:0.02 QI:74|1|1|1|0|0|3|313|259; (*GB) gi|359480884|ref|XP_003632538.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100853376 [Vitis vinifera];; (*ITAG) Solyc05g056380.2.1 (e_value=4e-111) genomic_reference:SL2.40ch05 gene_region:64856921-64858140 transcript_region:SL2.40ch05:64856921..64858140+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026817g0021.1 protein AED:0.10 eAED:0.10 QI:40|0.6|0.63|1|0.8|0.81|11|95|476; (*GB) gi|47933777|gb|AAT39459.1| (e_value=0.0) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=0.0) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=4e-174) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g056400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64861547-64864585 transcript_region:SL2.40ch05:64861547..64864585+ go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00026817g0017.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.5|0.66|3|350|97; (*GB) gi|351722639|ref|NP_001236995.1| (e_value=4e-52) uncharacterized protein LOC100527505 [Glycine max];; (*SWP) sp|P34893|CH10_ARATH (e_value=1e-52) 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=2 SV=1;; (*TAIR) AT1G14980.1 (e_value=7e-54) | Symbols: CPN10 | chaperonin 10 | chr1:5165930-5166654 REVERSE LENGTH=98;; (*ITAG) Solyc05g056390.2.1 (e_value=4e-62) genomic_reference:SL2.40ch05 gene_region:64858695-64859957 transcript_region:SL2.40ch05:64858695..64859957+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 ***- O24186_ORYSA); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 "; GO:0051087 NbS00026727g0004.1 protein AED:0.51 eAED:0.89 QI:0|0|0|0.75|1|1|4|0|79 NbS00011330g0006.1 protein AED:0.32 eAED:0.34 QI:406|0|0.16|1|0.6|0.33|6|0|456; (*GB) gi|356600304|gb|AET22503.1| (e_value=1e-21) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=9e-12) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc07g009180.1.1 (e_value=5e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00060699g0003.1 protein AED:0.73 eAED:0.73 QI:73|0.33|0.25|0.5|0.33|0.25|4|0|121; (*GB) gi|297808759|ref|XP_002872263.1| (e_value=6e-15) serine-type peptidase/ trypsin [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q3E6S8|DGP14_ARATH (e_value=2e-16) Putative protease Do-like 14 OS=Arabidopsis thaliana GN=DEGP14 PE=3 SV=2;; (*TAIR) AT5G27660.1 (e_value=3e-17) | Symbols: | Trypsin family protein with PDZ domain | chr5:9789835-9792235 REVERSE LENGTH=428; NbS00046364g0004.1 protein AED:0.37 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|119; (*GB) gi|147834060|emb|CAN77200.1| (e_value=1e-23) hypothetical protein VITISV_009267 [Vitis vinifera];; (*ITAG) Solyc12g088840.1.1 (e_value=1e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:62498164-62498427 transcript_region:SL2.40ch12:62498164..62498427+ go_terms:GO:0005509 functional_description:"Os07g0619200 protein (Fragment) (AHRD V1 ***- Q0D4L7_ORYSJ); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbC24001453g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|224075521|ref|XP_002304664.1| (e_value=2e-21) serine/threonine protein kinase PBS1 [Populus trichocarpa];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-18) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G13160.1 (e_value=2e-19) | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176854-4179682 FORWARD LENGTH=456;; (*ITAG) Solyc05g024290.2.1 (e_value=7e-21) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009562g0012.1 protein AED:0.26 eAED:0.30 QI:332|0.72|0.84|1|0.33|0.36|19|198|365; (*GB) gi|224131380|ref|XP_002321070.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O96622|ARPC1_DICDI (e_value=5e-78) Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1;; (*TAIR) AT2G30910.3 (e_value=2e-167) | Symbols: ARPC1A | actin-related protein C1A | chr2:13153447-13156869 FORWARD LENGTH=378;; (*ITAG) Solyc05g006470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1097268-1107650 transcript_region:SL2.40ch05:1097268..1107650+ go_terms:GO:0000166,GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 1B (AHRD V1 **** B6TA39_MAIZE); contains Interpro domain(s) IPR017383 Actin-related protein 2/3 complex, subunit 1 "; GO:0000166,GO:0051015 NbS00009562g0008.1 protein AED:0.23 eAED:0.23 QI:268|0.55|0.3|0.9|0.66|0.6|10|0|522; (*GB) gi|359473318|ref|XP_002267713.2| (e_value=4e-53) PREDICTED: uncharacterized protein LOC100258808 [Vitis vinifera];; (*TAIR) AT1G24160.2 (e_value=3e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). | chr1:8553669-8555830 REVERSE LENGTH=540;; (*ITAG) Solyc05g006490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1112454-1117445 transcript_region:SL2.40ch05:1112454..1117445- functional_description:"F3I6.9 protein (AHRD V1 *-*- O48683_ARATH)"; NbS00044369g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.6|0.9|0|0.4|10|150|407; (*GB) gi|296088545|emb|CBI37536.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q941R4|GONS1_ARATH (e_value=6e-174) GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2;; (*TAIR) AT2G13650.3 (e_value=5e-175) | Symbols: GONST1 | golgi nucleotide sugar transporter 1 | chr2:5687584-5690303 REVERSE LENGTH=333;; (*ITAG) Solyc01g008690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2740475-2744521 transcript_region:SL2.40ch01:2740475..2744521- go_terms:GO:0005515,GO:0005458 functional_description:"GDP-mannose transporter (AHRD V1 **** B2VUF6_PYRTR)"; GO:0005515,GO:0005458 NbS00044369g0004.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|0|0|2|0|74; (*GB) gi|296083890|emb|CBI24278.3| (e_value=2e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G26810.2 (e_value=4e-22) | Symbols: | Putative methyltransferase family protein | chr2:11433900-11436078 REVERSE LENGTH=256;; (*ITAG) Solyc11g065040.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47431290-47434506 transcript_region:SL2.40ch11:47431290..47434506- functional_description:"Methyltransferase type 12 (AHRD V1 *--- A1BDZ1_CHLPD); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00044369g0006.1 protein AED:0.38 eAED:0.55 QI:81|0.33|0.5|1|0|0|4|0|97; (*GB) gi|3426045|gb|AAC32244.1| (e_value=6e-32) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT2G26810.2 (e_value=2e-29) | Symbols: | Putative methyltransferase family protein | chr2:11433900-11436078 REVERSE LENGTH=256; NbS00034574g0003.1 protein AED:0.00 eAED:0.00 QI:0|0.5|0|1|1|1|3|0|514; (*GB) gi|359478335|ref|XP_002282251.2| (e_value=1e-142) PREDICTED: uncharacterized protein LOC100248459 [Vitis vinifera];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=3e-90) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT3G45260.1 (e_value=1e-92) | Symbols: | C2H2-like zinc finger protein | chr3:16596850-16598550 REVERSE LENGTH=446;; (*ITAG) Solyc06g075250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43081875-43084376 transcript_region:SL2.40ch06:43081875..43084376- go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU4_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00052984g0003.1 protein AED:0.10 eAED:0.10 QI:741|1|0.87|1|0.71|0.87|8|239|941; (*GB) gi|255556179|ref|XP_002519124.1| (e_value=0.0) GTP-binding protein alpha subunit, gna, putative [Ricinus communis];; (*SWP) sp|P93163|GPA2_SOYBN (e_value=3e-41) Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1;; (*TAIR) AT2G23460.1 (e_value=0.0) | Symbols: XLG1, ATXLG1 | extra-large G-protein 1 | chr2:9995699-9998945 FORWARD LENGTH=888;; (*ITAG) Solyc01g109110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87904937-87909600 transcript_region:SL2.40ch01:87904937..87909600- go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00004410g0019.1 protein AED:0.20 eAED:0.20 QI:298|0.4|0.33|1|0.6|0.66|6|0|528; (*GB) gi|359478489|ref|XP_002276395.2| (e_value=2e-104) PREDICTED: uncharacterized protein LOC100244907 [Vitis vinifera];; (*ITAG) Solyc06g082510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44587244-44590094 transcript_region:SL2.40ch06:44587244..44590094+ go_terms:GO:0003677,GO:0045449 functional_description:"Telomeric repeat-binding factor 1 (Fragment) (AHRD V1 *--- TERF1_CRIGR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00004410g0015.1 protein AED:0.00 eAED:0.00 QI:128|1|1|1|0.5|0.6|5|370|128; (*GB) gi|297736505|emb|CBI25376.3| (e_value=6e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49206|RS261_ARATH (e_value=6e-35) 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2;; (*TAIR) AT2G40590.1 (e_value=5e-36) | Symbols: | Ribosomal protein S26e family protein | chr2:16945215-16946345 REVERSE LENGTH=131;; (*ITAG) Solyc06g007470.2.1 (e_value=1e-46) genomic_reference:SL2.40ch06 gene_region:1479427-1482088 transcript_region:SL2.40ch06:1479427..1482088- go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00004410g0026.1 protein AED:0.03 eAED:0.03 QI:244|1|1|1|0.66|0.5|4|272|433; (*GB) gi|85068664|gb|ABC69412.1| (e_value=0.0) CYP73A47v3 [Nicotiana tabacum];; (*SWP) sp|P48522|TCMO_CATRO (e_value=0.0) Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=0.0) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00004410g0014.1 protein AED:0.12 eAED:0.12 QI:370|0.87|0.88|1|1|1|9|583|873; (*GB) gi|359478494|ref|XP_002276607.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera];; (*TAIR) AT3G51620.2 (e_value=7e-160) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc06g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44564087-44570873 transcript_region:SL2.40ch06:44564087..44570873- functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00004410g0001.1 protein AED:0.21 eAED:0.21 QI:434|0.84|0.64|1|0.92|0.85|14|275|855; (*GB) gi|255565913|ref|XP_002523945.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q6Z3U3|Y7797_ORYSJ (e_value=0.0) B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1;; (*TAIR) AT2G30470.1 (e_value=0.0) | Symbols: HSI2, VAL1 | high-level expression of sugar-inducible gene 2 | chr2:12980904-12984724 REVERSE LENGTH=790;; (*ITAG) Solyc06g082520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44592516-44602333 transcript_region:SL2.40ch06:44592516..44602333- go_terms:GO:0005515,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0016564 NbS00004410g0006.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|109 NbS00004410g0022.1 protein AED:0.30 eAED:0.30 QI:309|1|1|1|0.42|0.37|8|941|205; (*GB) gi|334182354|ref|NP_001184926.1| (e_value=3e-76) nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=1e-77) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT1G06890.3 (e_value=6e-79) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:2111585-2114038 REVERSE LENGTH=353;; (*ITAG) Solyc06g082500.2.1 (e_value=3e-83) genomic_reference:SL2.40ch06 gene_region:44579622-44585131 transcript_region:SL2.40ch06:44579622..44585131- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00004410g0024.1 protein AED:0.25 eAED:0.68 QI:0|0|0|1|0|0|2|0|107 NbS00009255g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|0.33|0.75|4|0|104; (*GB) gi|224098154|ref|XP_002311127.1| (e_value=7e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|O94660|NIT2_SCHPO (e_value=7e-18) Probable hydrolase nit2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nit2 PE=2 SV=1;; (*TAIR) AT4G08790.1 (e_value=7e-34) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr4:5608489-5611118 REVERSE LENGTH=307;; (*ITAG) Solyc05g054940.2.1 (e_value=5e-37) genomic_reference:SL2.40ch05 gene_region:63876769-63883268 transcript_region:SL2.40ch05:63876769..63883268- go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 1 like protein (AHRD V1 **** Q9LE50_ARATH); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00009255g0008.1 protein AED:0.04 eAED:0.04 QI:162|1|0.8|1|0.5|0.8|5|108|907; (*GB) gi|359486312|ref|XP_002275708.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241537 [Vitis vinifera];; (*TAIR) AT3G55060.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). | chr3:20403189-20406222 REVERSE LENGTH=896;; (*ITAG) Solyc05g054930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63872586-63876086 transcript_region:SL2.40ch05:63872586..63876086+ go_terms:GO:0008152 functional_description:"Centromere protein-like (AHRD V1 ***- Q9M2W0_ARATH); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0008152 NbS00009255g0006.1 protein AED:0.30 eAED:0.36 QI:225|0.16|0.28|0.85|1|1|7|0|237; (*GB) gi|388495254|gb|AFK35693.1| (e_value=1e-14) unknown [Lotus japonicus];; (*SWP) sp|Q9FYB7|RSZ32_ARATH (e_value=9e-14) Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1;; (*TAIR) AT3G53500.1 (e_value=3e-15) | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:19834557-19835896 REVERSE LENGTH=243;; (*ITAG) Solyc05g054920.2.1 (e_value=9e-35) genomic_reference:SL2.40ch05 gene_region:63862674-63866926 transcript_region:SL2.40ch05:63862674..63866926+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 6 (AHRD V1 *--- B6T453_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0008270,GO:0000166 NbS00001687g0007.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|0.66|0.5|4|0|569; (*GB) gi|350538711|ref|NP_001233844.1| (e_value=0.0) NIM1-like protein 2 [Solanum lycopersicum];; (*SWP) sp|Q8L746|NPR3_ARATH (e_value=6e-177) Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1;; (*TAIR) AT5G45110.1 (e_value=5e-178) | Symbols: NPR3, ATNPR3 | NPR1-like protein 3 | chr5:18229319-18231334 FORWARD LENGTH=586;; (*ITAG) Solyc07g044980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55346685-55351408 transcript_region:SL2.40ch07:55346685..55351408- go_terms:GO:0005515 functional_description:"NPR1-1 protein (Fragment) (AHRD V1 ***- B8XQT4_SOYBN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00015845g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.61|0.42|0.92|1|1|14|0|1149; (*GB) gi|225434215|ref|XP_002275762.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 12 [Vitis vinifera];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT2G43900.1 (e_value=0.0) | Symbols: | Endonuclease/exonuclease/phosphatase family protein | chr2:18178801-18183823 REVERSE LENGTH=1316;; (*ITAG) Solyc08g014580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4700365-4706701 transcript_region:SL2.40ch08:4700365..4706701- go_terms:GO:0004437 functional_description:"Inositol-1,4,5-trisphosphate 5-phosphatase 1 (AHRD V1 *-** SYJ1_SCHPO); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00015845g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0.33|0.5|4|0|359; (*GB) gi|224117798|ref|XP_002331634.1| (e_value=4e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=2e-127) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43890.1 (e_value=4e-157) | Symbols: | Pectin lyase-like superfamily protein | chr2:18176924-18178390 FORWARD LENGTH=392;; (*ITAG) Solyc08g014540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4612405-4615191 transcript_region:SL2.40ch08:4612405..4615191- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00015845g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.5|1|1|1|4|448|566; (*GB) gi|359478231|ref|XP_002279889.2| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-128) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc08g014570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4696885-4699796 transcript_region:SL2.40ch08:4696885..4699796+ go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00015845g0011.1 protein AED:0.33 eAED:0.34 QI:0|0.25|0.4|1|0.5|0.8|5|834|96 NbS00054309g0007.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.5|0.75|1|1|4|443|114; (*GB) gi|255559488|ref|XP_002520764.1| (e_value=5e-61) small nuclear ribonucleoprotein sm d1, putative [Ricinus communis];; (*SWP) sp|P62315|SMD1_MOUSE (e_value=3e-44) Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1;; (*TAIR) AT4G02840.1 (e_value=9e-63) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116;; (*ITAG) Solyc09g064660.2.1 (e_value=1e-65) genomic_reference:SL2.40ch09 gene_region:57577967-57581962 transcript_region:SL2.40ch09:57577967..57581962+ go_terms:GO:0005515,GO:0003729 functional_description:"Small nuclear ribonucleoprotein Sm D1 (AHRD V1 ***- B6TXH2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0003729 NbS00054309g0002.1 protein AED:0.45 eAED:0.45 QI:98|-1|0|1|-1|1|1|0|72; (*ITAG) Solyc06g084300.1.1 (e_value=1e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:45771321-45771512 transcript_region:SL2.40ch06:45771321..45771512- functional_description:"Unknown Protein (AHRD V1)"; NbS00026343g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.85|0.62|0.87|1|1|8|0|242; (*GB) gi|255541208|ref|XP_002511668.1| (e_value=1e-105) vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|Q84WW5|VAP13_ARATH (e_value=3e-95) Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1;; (*TAIR) AT4G00170.1 (e_value=2e-96) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr4:70732-72085 REVERSE LENGTH=239;; (*ITAG) Solyc01g090990.2.1 (e_value=1e-132) genomic_reference:SL2.40ch01 gene_region:76442172-76448800 transcript_region:SL2.40ch01:76442172..76448800- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005198 NbS00026343g0005.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|96; (*ITAG) Solyc01g090960.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:76435187-76436001 transcript_region:SL2.40ch01:76435187..76436001+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026343g0006.1 protein AED:0.16 eAED:0.22 QI:0|0|0|1|1|1|2|0|148; (*ITAG) Solyc01g090980.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch01 gene_region:76438872-76439441 transcript_region:SL2.40ch01:76438872..76439441+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003892g0001.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|101; (*GB) gi|351653936|ref|YP_004891662.1| (e_value=3e-19) unnamed protein product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-18) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021310.1.1 (e_value=7e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00023326g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|675; (*GB) gi|350539890|ref|NP_001234310.1| (e_value=2e-171) GRAS4 protein [Solanum lycopersicum];; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=1e-137) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=7e-139) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc06g082530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44607827-44609788 transcript_region:SL2.40ch06:44607827..44609788- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GJL6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00032564g0010.1 protein AED:0.06 eAED:0.06 QI:299|0.33|0.5|1|0.33|0.75|4|308|497; (*GB) gi|359481727|ref|XP_002272686.2| (e_value=7e-129) PREDICTED: uncharacterized protein LOC100266680 [Vitis vinifera];; (*SWP) sp|Q9LZM8|BLH9_ARATH (e_value=9e-51) BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1;; (*TAIR) AT5G02030.1 (e_value=7e-52) | Symbols: LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | POX (plant homeobox) family protein | chr5:395754-398872 FORWARD LENGTH=575;; (*ITAG) Solyc09g011380.2.1 (e_value=7e-76) genomic_reference:SL2.40ch09 gene_region:4709685-4715117 transcript_region:SL2.40ch09:4709685..4715117- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 9 (AHRD V1 *--- BLH9_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00032564g0009.1 protein AED:0.21 eAED:0.34 QI:0|1|0|1|1|0.5|2|0|144; (*GB) gi|224083819|ref|XP_002307135.1| (e_value=4e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Q4|U202B_ARATH (e_value=7e-44) UPF0202 protein At3g57940 OS=Arabidopsis thaliana GN=At3g57940 PE=2 SV=2;; (*TAIR) AT3G57940.1 (e_value=5e-45) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr3:21449560-21455834 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=2e-58) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00030356g0015.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|473|662; (*GB) gi|350536053|ref|NP_001234483.1| (e_value=0.0) receptor-like protein kinase 3 precursor [Solanum lycopersicum];; (*SWP) sp|Q3E991|Y5269_ARATH (e_value=9e-148) Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4;; (*TAIR) AT3G42880.1 (e_value=1e-149) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633;; (*ITAG) Solyc12g009190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2481771-2484251 transcript_region:SL2.40ch12:2481771..2484251- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00030356g0016.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|0.66|0|0.33|3|193|160; (*GB) gi|225444677|ref|XP_002277428.1| (e_value=5e-77) PREDICTED: uncharacterized protein LOC100255995 [Vitis vinifera];; (*TAIR) AT1G19130.1 (e_value=9e-76) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | chr1:6609545-6610555 REVERSE LENGTH=192;; (*ITAG) Solyc12g009180.1.1 (e_value=2e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2477766-2480583 transcript_region:SL2.40ch12:2477766..2480583- functional_description:"Cupin superfamily (DUF985) (AHRD V1 ***- D9YHB2_9DELT); contains Interpro domain(s) IPR009327 Protein of unknown function DUF985 "; NbS00030356g0014.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.25|0.75|1|0.75|4|0|221; (*GB) gi|225444667|ref|XP_002277280.1| (e_value=1e-115) PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis vinifera];; (*SWP) sp|P13869|CB12_PETHY (e_value=2e-86) Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1;; (*TAIR) AT1G19150.1 (e_value=2e-110) | Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270;; (*ITAG) Solyc12g009200.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2485058-2487651 transcript_region:SL2.40ch12:2485058..2487651- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 ***- CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00030356g0006.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.2|1|1|5|0|64 NbS00002422g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|0|0|5|0|349; (*GB) gi|356567743|ref|XP_003552076.1| (e_value=8e-124) PREDICTED: uncharacterized protein LOC100810342 [Glycine max];; (*TAIR) AT2G30900.1 (e_value=1e-110) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61048180-61051087 transcript_region:SL2.40ch07:61048180..61051087+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002422g0009.1 protein AED:0.26 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|345; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=1e-170) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=9e-172) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00002422g0002.1 protein AED:0.40 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=2e-45) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=1e-37) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=1e-38) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00002422g0001.1 protein AED:0.58 eAED:0.70 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=2e-16) poly(A)-binding protein [Nicotiana tabacum];; (*ITAG) Solyc12g088720.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00024824g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.77|0.68|0.94|0.83|0.89|19|0|744; (*GB) gi|225448459|ref|XP_002272182.1| (e_value=7e-180) PREDICTED: uncharacterized protein LOC100250143 [Vitis vinifera];; (*TAIR) AT5G05570.2 (e_value=6e-143) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc06g051390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31221832-31228128 transcript_region:SL2.40ch06:31221832..31228128+ go_terms:GO:0000166 functional_description:"Tomosyn-like protein (AHRD V1 **-- A9RPV0_PHYPA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00024824g0009.1 protein AED:0.19 eAED:0.20 QI:0|0.75|0.66|1|0.37|0.55|9|0|343; (*GB) gi|224109304|ref|XP_002315153.1| (e_value=4e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y2K9|STB5L_HUMAN (e_value=3e-16) Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=2 SV=2;; (*TAIR) AT5G05570.2 (e_value=3e-105) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc06g051380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:31210017-31217104 transcript_region:SL2.40ch06:31210017..31217104+ functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 **-- L2GL2_DANRE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00032332g0003.1 protein AED:0.09 eAED:0.20 QI:44|0|0|1|0|0.5|2|0|108; (*ITAG) Solyc12g099780.1.1 (e_value=6e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:65125972-65128986 transcript_region:SL2.40ch12:65125972..65128986- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00011868g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.93|0.81|0.93|0.93|0.87|16|480|533; (*GB) gi|225448938|ref|XP_002272338.1| (e_value=0.0) PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera];; (*SWP) sp|Q9C5X3|KEULE_ARATH (e_value=0.0) SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2;; (*TAIR) AT1G12360.1 (e_value=0.0) | Symbols: KEU | Sec1/munc18-like (SM) proteins superfamily | chr1:4201172-4206144 FORWARD LENGTH=666;; (*ITAG) Solyc08g079520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60189768-60206202 transcript_region:SL2.40ch08:60189768..60206202+ go_terms:GO:0017075 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0017075 NbS00027781g0001.1 protein AED:0.68 eAED:0.69 QI:0|0|0|0.33|1|1|3|0|202 NbS00018292g0004.1 protein AED:0.45 eAED:0.48 QI:89|0|0.25|0.75|1|1|4|0|110 NbS00018292g0015.1 protein AED:0.27 eAED:0.27 QI:167|0.95|1|1|0.90|0.91|23|420|1033; (*GB) gi|359488197|ref|XP_002271823.2| (e_value=0.0) PREDICTED: protease Do-like 7-like [Vitis vinifera];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=0.0) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=0.0) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc03g043660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11111754-11138015 transcript_region:SL2.40ch03:11111754..11138015- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00018292g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|296087172|emb|CBI33546.3| (e_value=3e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g091380.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47264046-47264363 transcript_region:SL2.40ch02:47264046..47264363- functional_description:"Unknown Protein (AHRD V1)"; NbS00018292g0016.1 protein AED:0.34 eAED:0.56 QI:24|0|0.5|1|0|0|2|0|101 NbS00018292g0002.1 protein AED:0.29 eAED:0.68 QI:63|0|0.5|1|0|0.5|2|0|90; (*ITAG) Solyc02g086640.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:43875144-43877324 transcript_region:SL2.40ch02:43875144..43877324+ go_terms:GO:0005515 functional_description:"tRNA adenine-N1 methyltransferase catalytic subunit TRM61 (AHRD V1 ***- C1C0S4_9MAXI); contains Interpro domain(s) IPR014816 tRNA methyltransferase complex GCD14 subunit "; GO:0005515 NbS00006179g0007.1 protein AED:0.08 eAED:0.08 QI:224|1|0.92|1|1|1|13|453|493; (*GB) gi|257815407|gb|ACV70032.1| (e_value=0.0) 3-ketoacyl CoA thiolase 1 [Petunia x hybrida];; (*SWP) sp|Q56WD9|THIK2_ARATH (e_value=0.0) 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2;; (*TAIR) AT2G33150.1 (e_value=0.0) | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacyl-CoA thiolase 3 | chr2:14047814-14050983 REVERSE LENGTH=462;; (*ITAG) Solyc09g061840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56053461-56059270 transcript_region:SL2.40ch09:56053461..56059270- go_terms:GO:0003988,GO:0003985 functional_description:"3-ketoacyl CoA thiolase 1 (AHRD V1 **** C8YNG6_PETHY); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003988,GO:0003985 NbS00006179g0008.1 protein AED:0.13 eAED:0.13 QI:26|0|0.25|1|0.33|0|4|0|531; (*GB) gi|359483659|ref|XP_002274224.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84VG6|PP160_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2;; (*TAIR) AT2G17525.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7624178-7626058 FORWARD LENGTH=626;; (*ITAG) Solyc09g061760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:55904414-55906300 transcript_region:SL2.40ch09:55904414..55906300+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010758g0007.1 protein AED:0.15 eAED:0.15 QI:527|1|0.92|1|0.07|0.21|14|643|399; (*GB) gi|147843683|emb|CAN81991.1| (e_value=8e-94) hypothetical protein VITISV_040411 [Vitis vinifera];; (*SWP) sp|Q9LT35|NEK6_ARATH (e_value=5e-71) Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=3e-72) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc03g059250.2.1 (e_value=4e-158) genomic_reference:SL2.40ch03 gene_region:25551514-25557664 transcript_region:SL2.40ch03:25551514..25557664+ go_terms:GO:0004711 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00055268g0001.1 protein AED:0.27 eAED:0.39 QI:0|0.33|0|1|1|1|4|0|172; (*GB) gi|225435100|ref|XP_002281496.1| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100263778 [Vitis vinifera];; (*ITAG) Solyc11g073020.1.1 (e_value=4e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53234523-53235739 transcript_region:SL2.40ch11:53234523..53235739- go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6T8A4_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00021003g0114.1 protein AED:0.02 eAED:0.12 QI:0|1|0.5|1|1|0.75|4|109|219 NbS00021003g0116.1 protein AED:0.27 eAED:0.29 QI:0|0.33|0|1|1|1|4|0|246 NbS00021003g0105.1 protein AED:0.40 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|202 NbS00021003g0107.1 protein AED:0.47 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|167 NbS00021003g0115.1 protein AED:0.16 eAED:0.16 QI:194|0.83|0.85|1|0.83|0.71|7|402|243 NbS00024487g0013.1 protein AED:0.13 eAED:0.18 QI:0|0|0|1|0|0.14|7|0|1650; (*GB) gi|39577522|gb|AAR28378.1| (e_value=0.0) EIX receptor 2 [Solanum lycopersicum];; (*SWP) sp|Q9FIZ3|GSO2_ARATH (e_value=2e-52) LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=4e-94) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00024487g0014.1 protein AED:0.22 eAED:0.25 QI:0|0.33|0|1|0|0|4|0|595; (*GB) gi|39577522|gb|AAR28378.1| (e_value=0.0) EIX receptor 2 [Solanum lycopersicum];; (*SWP) sp|Q9M2Z1|BAME2_ARATH (e_value=8e-32) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=4e-42) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00024487g0015.1 protein AED:0.36 eAED:0.43 QI:0|0|0|1|1|0.5|2|0|305; (*GB) gi|350535018|ref|NP_001234427.1| (e_value=1e-158) EIX receptor 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=5e-35) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=1e-47) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008620.1.1 (e_value=1e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:3569571-3572666 transcript_region:SL2.40ch07:3569571..3572666- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00024487g0005.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|39577522|gb|AAR28378.1| (e_value=2e-100) EIX receptor 2 [Solanum lycopersicum];; (*SWP) sp|Q9SYQ8|CLV1_ARATH (e_value=7e-19) Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3;; (*TAIR) AT5G49290.1 (e_value=2e-23) | Symbols: ATRLP56, RLP56 | receptor like protein 56 | chr5:19980195-19983869 FORWARD LENGTH=908;; (*ITAG) Solyc07g008630.1.1 (e_value=3e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00049918g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|75; (*GB) gi|728744|sp|P40691.1|A115_TOBAC (e_value=2e-45) RecName: Full=Auxin-induced protein PCNT115;; (*SWP) sp|P40691|A115_TOBAC (e_value=5e-47) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60710.1 (e_value=2e-33) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097970.2.1 (e_value=5e-43) genomic_reference:SL2.40ch09 gene_region:67192761-67196455 transcript_region:SL2.40ch09:67192761..67196455+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00039208g0003.1 protein AED:0.24 eAED:0.24 QI:226|1|0.66|1|0.5|0.33|3|0|152; (*GB) gi|359495759|ref|XP_003635083.1| (e_value=3e-44) PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera];; (*SWP) sp|P0CB17|CSPLH_ARATH (e_value=7e-30) CASP-like protein At3g50810 OS=Arabidopsis thaliana GN=At3g50810 PE=2 SV=1;; (*TAIR) AT3G50810.1 (e_value=5e-31) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:18889002-18889868 REVERSE LENGTH=154;; (*ITAG) Solyc02g090000.2.1 (e_value=3e-52) genomic_reference:SL2.40ch02 gene_region:46263082-46266622 transcript_region:SL2.40ch02:46263082..46266622- functional_description:"UPF0497 membrane protein At3g50810 (AHRD V1 ***- U497K_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00002392g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|1786136|dbj|BAA19111.1| (e_value=2e-82) PEThy;ZPT2-6 [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=3e-33) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT5G04390.1 (e_value=1e-51) | Symbols: | C2H2-type zinc finger family protein | chr5:1239166-1240254 FORWARD LENGTH=362;; (*ITAG) Solyc05g055500.1.1 (e_value=5e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64268900-64269988 transcript_region:SL2.40ch05:64268900..64269988- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00002392g0011.1 protein AED:0.05 eAED:0.05 QI:293|1|1|1|1|1|4|259|398; (*GB) gi|21105744|gb|AAM34771.1|AF509871_1 (e_value=0.0) nam-like protein 8 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-86) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10490.2 (e_value=3e-90) | Symbols: ANAC052, NAC052 | NAC domain containing protein 52 | chr3:3268075-3270608 FORWARD LENGTH=451;; (*ITAG) Solyc05g055480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64255495-64259429 transcript_region:SL2.40ch05:64255495..64259429- go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00002392g0014.1 protein AED:0.12 eAED:0.13 QI:0|0.37|0.33|0.88|0.5|0.55|9|0|583; (*GB) gi|255584086|ref|XP_002532786.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q9FHN6|SKS2_ARATH (e_value=2e-110) Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1;; (*TAIR) AT1G21850.1 (e_value=2e-117) | Symbols: sks8 | SKU5 similar 8 | chr1:7667803-7670530 REVERSE LENGTH=551;; (*ITAG) Solyc05g055490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64264942-64267983 transcript_region:SL2.40ch05:64264942..64267983+ go_terms:GO:0030599 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0030599 NbS00035350g0004.1 protein AED:0.63 eAED:0.63 QI:22|0.75|0.2|0.8|0.5|0.6|5|0|137; (*GB) gi|255586605|ref|XP_002533935.1| (e_value=6e-86) pyruvate kinase, putative [Ricinus communis];; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=7e-31) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G52990.2 (e_value=2e-82) | Symbols: | Pyruvate kinase family protein | chr3:19649336-19652237 FORWARD LENGTH=474;; (*ITAG) Solyc10g083720.1.1 (e_value=3e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62811178-62816713 transcript_region:SL2.40ch10:62811178..62816713+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- Q94KE3_ARATH); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00035350g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|71905595|gb|AAZ52775.1| (e_value=3e-24) hypothetical protein At5g43390 [Arabidopsis thaliana];; (*TAIR) AT5G43390.1 (e_value=3e-26) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:17422940-17424871 REVERSE LENGTH=643;; (*ITAG) Solyc09g089940.1.1 (e_value=6e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00035350g0010.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0|2|0|423; (*GB) gi|359477727|ref|XP_003632014.1| (e_value=6e-160) PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Vitis vinifera];; (*SWP) sp|Q5UNY4|YL728_MIMIV (e_value=3e-42) Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1;; (*TAIR) AT5G43400.1 (e_value=2e-139) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:17426182-17428149 REVERSE LENGTH=655;; (*ITAG) Solyc09g089940.1.1 (e_value=7e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00016488g0009.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|0|2|0|714; (*GB) gi|15418712|gb|AAG31015.1| (e_value=1e-111) tospovirus resistance protein C [Solanum lycopersicum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=2e-89) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=9e-48) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc05g009740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3947234-3949477 transcript_region:SL2.40ch05:3947234..3949477- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00016488g0010.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.75|0|0|4|0|329; (*GB) gi|26190256|emb|CAD29727.1| (e_value=2e-19) hero resistance protein 3 homologue [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=9e-13) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*ITAG) Solyc05g009740.1.1 (e_value=3e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3947234-3949477 transcript_region:SL2.40ch05:3947234..3949477- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00006223g0010.1 protein AED:0.28 eAED:0.30 QI:0|0.77|0.7|1|0.66|0.8|10|0|583; (*GB) gi|359480487|ref|XP_002275725.2| (e_value=0.0) PREDICTED: protein SCAI isoform 1 [Vitis vinifera];; (*SWP) sp|Q8N9R8|SCAI_HUMAN (e_value=3e-68) Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2;; (*TAIR) AT4G40050.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr4:18561206-18563727 REVERSE LENGTH=599;; (*ITAG) Solyc11g010240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3293989-3299838 transcript_region:SL2.40ch11:3293989..3299838- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_HUMAN)"; GO:0003714 NbS00006223g0009.1 protein AED:0.54 eAED:0.57 QI:0|0|0|0.5|0|0.5|2|0|77; (*SWP) sp|P09976|YCF2_TOBAC (e_value=3e-14) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) Solyc01g007640.2.1 (e_value=8e-14) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00006223g0008.1 protein AED:0.49 eAED:0.68 QI:0|0.25|0.4|0.8|1|1|5|0|100; (*GB) gi|10880578|gb|AAG24290.1|AF220373_1 (e_value=2e-33) histone H3-D, partial [Glycine hirticaulis];; (*SWP) sp|Q71H73|H33_VITVI (e_value=7e-34) Histone H3.3 OS=Vitis vinifera PE=2 SV=3;; (*TAIR) AT5G10980.1 (e_value=5e-35) | Symbols: | Histone superfamily protein | chr5:3472591-3473349 REVERSE LENGTH=136;; (*ITAG) Solyc11g010230.1.1 (e_value=5e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3290641-3291380 transcript_region:SL2.40ch11:3290641..3291380- go_terms:GO:0003677,GO:0000786 functional_description:"Histone H3 (AHRD V1 ***- A8MRL0_ARATH); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0003677,GO:0000786 NbS00020637g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.33|3|0|186; (*GB) gi|187942405|gb|ACD40011.1| (e_value=1e-121) pollen-specific C2 domain containing protein [Nicotiana sp. variant 'Rastroensis'];; (*SWP) sp|Q9FVJ3|AGD12_ARATH (e_value=1e-30) ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1;; (*TAIR) AT3G17980.1 (e_value=1e-83) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc12g040800.1.1 (e_value=5e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40771023-40772733 transcript_region:SL2.40ch12:40771023..40772733- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KD31_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00022849g0005.1 protein AED:0.20 eAED:0.20 QI:245|0.88|0.8|1|0.66|0.6|10|193|514; (*GB) gi|225434492|ref|XP_002275283.1| (e_value=2e-95) PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera];; (*SWP) sp|O17861|YVRI_CAEEL (e_value=1e-27) GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1 SV=1;; (*TAIR) AT1G07080.1 (e_value=3e-90) | Symbols: | Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265;; (*ITAG) Solyc06g007340.2.1 (e_value=5e-148) genomic_reference:SL2.40ch06 gene_region:1357680-1363111 transcript_region:SL2.40ch06:1357680..1363111- go_terms:GO:0015036 functional_description:"Gamma-interferon-inducible lysosomal thiol reductase (AHRD V1 ***- B6U3P7_MAIZE); contains Interpro domain(s) IPR004911 Gamma interferon inducible lysosomal thiol reductase GILT "; GO:0015036 NbS00035147g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|0.33|0.25|4|0|241; (*GB) gi|255586620|ref|XP_002533942.1| (e_value=1e-110) protein with unknown function [Ricinus communis];; (*TAIR) AT1G31040.1 (e_value=2e-83) | Symbols: | PLATZ transcription factor family protein | chr1:11069793-11072182 REVERSE LENGTH=243;; (*ITAG) Solyc02g068510.1.1 (e_value=6e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33042372-33045458 transcript_region:SL2.40ch02:33042372..33045458- functional_description:"Zinc-binding protein (AHRD V1 **-- Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00061802g0003.1 protein AED:0.03 eAED:0.03 QI:138|1|0.5|1|0|0|2|0|454; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=0.0) malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZWR8|ANTA_GENTR (e_value=9e-109) Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT5G39090.1 (e_value=7e-72) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:15643612-15644958 FORWARD LENGTH=448;; (*ITAG) Solyc10g008680.1.1 (e_value=3e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00023113g0012.1 protein AED:0.16 eAED:0.16 QI:167|1|1|1|1|1|6|345|325; (*GB) gi|356520448|ref|XP_003528874.1| (e_value=4e-170) PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Glycine max];; (*SWP) sp|Q5R4E0|MAT2B_PONAB (e_value=1e-27) Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1;; (*TAIR) AT4G00560.1 (e_value=6e-154) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:240798-242267 REVERSE LENGTH=327;; (*ITAG) Solyc01g094190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77513558-77517921 transcript_region:SL2.40ch01:77513558..77517921+ go_terms:GO:0045226,GO:0008152 functional_description:"dTDP-4-dehydrorhamnose reductase (AHRD V1 ***- D7VML6_9SPHI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0045226,GO:0008152 NbS00023113g0014.1 protein AED:0.27 eAED:0.28 QI:268|0.8|0.80|1|0.65|0.71|21|379|563; (*GB) gi|585452|sp|P37225.1|MAON_SOLTU (e_value=0.0) RecName: Full=NAD-dependent malic enzyme 59 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor;; (*SWP) sp|P37225|MAON_SOLTU (e_value=0.0) NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT4G00570.1 (e_value=0.0) | Symbols: NAD-ME2 | NAD-dependent malic enzyme 2 | chr4:242817-246522 REVERSE LENGTH=607;; (*ITAG) Solyc01g094200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77521221-77531982 transcript_region:SL2.40ch01:77521221..77531982+ go_terms:GO:0006108,GO:0008152,GO:0051287,GO:0016616,GO:0055114 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0006108,GO:0008152,GO:0051287,GO:0016616,GO:0055114 NbS00023113g0016.1 protein AED:0.35 eAED:0.40 QI:0|1|0.6|1|0.75|0.6|5|0|257; (*GB) gi|225454081|ref|XP_002271354.1| (e_value=1e-100) PREDICTED: uncharacterized protein LOC100248297 [Vitis vinifera];; (*ITAG) Solyc01g094180.2.1 (e_value=2e-79) genomic_reference:SL2.40ch01 gene_region:77510177-77512475 transcript_region:SL2.40ch01:77510177..77512475+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022591g0010.1 protein AED:0.19 eAED:0.19 QI:384|0.93|0.93|1|0.8|0.81|16|0|625; (*GB) gi|5902707|sp|Q40412.1|ABA2_NICPL (e_value=0.0) RecName: Full=Zeaxanthin epoxidase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40412|ABA2_NICPL (e_value=0.0) Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1;; (*TAIR) AT5G67030.1 (e_value=0.0) | Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | zeaxanthin epoxidase (ZEP) (ABA1) | chr5:26753745-26757090 REVERSE LENGTH=667;; (*ITAG) Solyc02g090890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46947558-46953158 transcript_region:SL2.40ch02:46947558..46953158- go_terms:GO:0009540 functional_description:"Zeaxanthin epoxidase, chloroplastic"; GO:0009540 NbS00022591g0002.1 protein AED:0.31 eAED:0.72 QI:0|0|0.5|1|0|0.5|2|63|112; (*ITAG) Solyc06g063290.2.1 (e_value=5e-28) genomic_reference:SL2.40ch06 gene_region:36385129-36391488 transcript_region:SL2.40ch06:36385129..36391488+ go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 ***- D8DKZ3_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00039613g0007.1 protein AED:0.13 eAED:0.16 QI:0|0.5|0|1|0|0.33|3|0|197; (*GB) gi|255576790|ref|XP_002529282.1| (e_value=5e-39) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZVQ6|P2B10_ARATH (e_value=7e-33) F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1;; (*TAIR) AT2G02360.1 (e_value=6e-34) | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10 | chr2:619699-620736 REVERSE LENGTH=272;; (*ITAG) Solyc12g098190.1.1 (e_value=4e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64152328-64154070 transcript_region:SL2.40ch12:64152328..64154070- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00039613g0006.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|15088626|gb|AAK84134.1|AF389848_1 (e_value=2e-19) nictaba [Nicotiana tabacum];; (*SWP) sp|Q3E6P4|FB95_ARATH (e_value=1e-14) F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1;; (*TAIR) AT2G02240.1 (e_value=9e-16) | Symbols: MEE66 | F-box family protein | chr2:592359-593602 REVERSE LENGTH=320;; (*ITAG) Solyc12g098200.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64155954-64157706 transcript_region:SL2.40ch12:64155954..64157706- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00056196g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|224135793|ref|XP_002327305.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT4G13530.1 (e_value=2e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7866808-7868555 FORWARD LENGTH=270;; (*ITAG) Solyc07g063050.1.1 (e_value=3e-85) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62863155-62863988 transcript_region:SL2.40ch07:62863155..62863988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056196g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.25|0.2|1|1|1|5|0|315; (*GB) gi|228481109|gb|ACQ42253.1| (e_value=0.0) SnRK2 calcium sensor [Nicotiana plumbaginifolia];; (*TAIR) AT4G38810.2 (e_value=8e-135) | Symbols: | Calcium-binding EF-hand family protein | chr4:18115607-18118860 REVERSE LENGTH=375;; (*ITAG) Solyc01g111040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89209383-89212670 transcript_region:SL2.40ch01:89209383..89212670+ go_terms:GO:0005509 functional_description:"EF-Hand containing protein-like (AHRD V1 ***- Q9T0I9_ARATH); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00000134g0001.1 protein AED:0.25 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|32454708|gb|AAP83135.1| (e_value=2e-113) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=2e-96) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=1e-79) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc08g029000.2.1 (e_value=5e-98) genomic_reference:SL2.40ch08 gene_region:21980663-21984456 transcript_region:SL2.40ch08:21980663..21984456+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00000134g0013.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0|0.75|0.66|0.75|4|0|295; (*GB) gi|32454706|gb|AAP83134.1| (e_value=2e-106) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|P38415|LOXA_SOLLC (e_value=2e-93) Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=3e-73) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc08g014000.2.1 (e_value=1e-94) genomic_reference:SL2.40ch08 gene_region:3416213-3422793 transcript_region:SL2.40ch08:3416213..3422793- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00000134g0014.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0|1|0|0.33|3|0|61; (*GB) gi|32454708|gb|AAP83135.1| (e_value=9e-25) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|P37831|LOX11_SOLTU (e_value=8e-23) Linoleate 9S-lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=7e-19) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc08g014000.2.1 (e_value=2e-23) genomic_reference:SL2.40ch08 gene_region:3416213-3422793 transcript_region:SL2.40ch08:3416213..3422793- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00000134g0010.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|0|0|2|0|77; (*GB) gi|32454708|gb|AAP83135.1| (e_value=2e-26) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|P38415|LOXA_SOLLC (e_value=7e-26) Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1;; (*TAIR) AT3G22400.1 (e_value=1e-22) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc08g014000.2.1 (e_value=4e-27) genomic_reference:SL2.40ch08 gene_region:3416213-3422793 transcript_region:SL2.40ch08:3416213..3422793- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00003935g0006.1 protein AED:0.36 eAED:0.38 QI:0|0.5|0.28|1|0.83|0.85|7|0|675; (*GB) gi|225447998|ref|XP_002270419.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 8-like [Vitis vinifera];; (*SWP) sp|Q8RY89|PI5K8_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 8 OS=Arabidopsis thaliana GN=PIP5K8 PE=2 SV=1;; (*TAIR) AT1G60890.1 (e_value=0.0) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr1:22412452-22416338 REVERSE LENGTH=769;; (*ITAG) Solyc01g104140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84370683-84378111 transcript_region:SL2.40ch01:84370683..84378111+ go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7KLK6_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00039004g0001.1 protein AED:0.10 eAED:0.10 QI:313|0|0.5|1|0|0.5|2|0|153; (*GB) gi|224063327|ref|XP_002301098.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g087960.1.1 (e_value=1e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:61902124-61904077 transcript_region:SL2.40ch12:61902124..61904077+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039004g0007.1 protein AED:0.54 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|90; (*GB) gi|11466009|ref|NP_054550.1| (e_value=1e-18) hypothetical protein NitaCp076 [Nicotiana tabacum];; (*ITAG) Solyc01g007680.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1896590-1896985 transcript_region:SL2.40ch01:1896590..1896985- functional_description:"Orf146 protein (AHRD V1 ***- Q9MFF3_BETVU)"; NbS00013947g0012.1 protein AED:0.30 eAED:0.30 QI:46|1|0.92|1|0.92|0.92|14|0|528; (*GB) gi|225447007|ref|XP_002267415.1| (e_value=0.0) PREDICTED: NEDD8-activating enzyme E1 regulatory subunit [Vitis vinifera];; (*SWP) sp|P42744|ULA1_ARATH (e_value=0.0) NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1;; (*TAIR) AT1G05180.1 (e_value=0.0) | Symbols: AXR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:1498357-1501775 REVERSE LENGTH=540;; (*ITAG) Solyc11g072460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52713558-52727401 transcript_region:SL2.40ch11:52713558..52727401+ go_terms:GO:0008152,GO:0003824 functional_description:"Nedd8 activating enzyme E1 subunit 1 (AHRD V1 ***- B5DFY9_SALSA); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0008152,GO:0003824 NbS00013947g0011.1 protein AED:0.21 eAED:0.21 QI:642|0.77|0.8|1|0.66|0.5|10|304|228; (*GB) gi|357487581|ref|XP_003614078.1| (e_value=1e-48) HGWP repeat containing protein-like protein [Medicago truncatula];; (*TAIR) AT1G40087.1 (e_value=1e-16) | Symbols: | Plant transposase (Ptta/En/Spm family) | chr1:14999762-15001868 REVERSE LENGTH=390; NbS00001618g0010.1 protein AED:0.28 eAED:0.29 QI:0|0.72|0.73|0.95|0.63|0.69|23|477|910; (*GB) gi|359494061|ref|XP_003634715.1| (e_value=0.0) PREDICTED: 1,4-alpha-glucan-branching enzyme-like isoform 2 [Vitis vinifera];; (*SWP) sp|D2WL32|GLGB3_ARATH (e_value=0.0) 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1;; (*TAIR) AT3G20440.2 (e_value=0.0) | Symbols: EMB2729, BE1 | Alpha amylase family protein | chr3:7123603-7130364 REVERSE LENGTH=899;; (*ITAG) Solyc07g064830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64039012-64053950 transcript_region:SL2.40ch07:64039012..64053950+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** C5FVR4_NANOT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00018189g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.42|0.25|0.87|0.71|0.75|8|66|248; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-67) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00018189g0013.1 protein AED:0.13 eAED:0.27 QI:0|0|0|0.7|0.55|0.6|10|0|631; (*GB) gi|297735132|emb|CBI17494.3| (e_value=2e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R323|RFC3_MOUSE (e_value=3e-27) Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1;; (*TAIR) AT5G27740.1 (e_value=4e-36) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc02g085060.1.1 (e_value=2e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42656476-42660409 transcript_region:SL2.40ch02:42656476..42660409- functional_description:"Replication factor C subunit 5 (AHRD V1 *-*- B6T5I0_MAIZE)"; NbS00016265g0016.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|0.83|6|0|220; (*GB) gi|86558916|gb|ABD03941.1| (e_value=4e-149) urate oxidase [Nicotiana tabacum];; (*SWP) sp|P04670|URIC1_SOYBN (e_value=1e-117) Uricase-2 isozyme 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT2G26230.1 (e_value=7e-109) | Symbols: | uricase / urate oxidase / nodulin 35, putative | chr2:11164956-11166968 FORWARD LENGTH=309;; (*ITAG) Solyc11g006550.1.1 (e_value=3e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1196006-1201138 transcript_region:SL2.40ch11:1196006..1201138- go_terms:GO:0004846 functional_description:"Uricase (AHRD V1 ***- A2SXR3_SOLLC); contains Interpro domain(s) IPR002042 Uricase "; GO:0004846 NbS00016265g0001.1 protein AED:0.07 eAED:0.07 QI:59|1|0.85|1|0.83|0.85|7|353|228; (*GB) gi|351723651|ref|NP_001238566.1| (e_value=6e-98) uncharacterized protein LOC100499956 [Glycine max];; (*SWP) sp|Q9CAF2|NUD26_ARATH (e_value=8e-95) Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1;; (*TAIR) AT3G10620.1 (e_value=6e-96) | Symbols: ATNUDX26, NUDX26 | nudix hydrolase homolog 26 | chr3:3320263-3321565 FORWARD LENGTH=216;; (*ITAG) Solyc11g006580.1.1 (e_value=5e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1210739-1214519 transcript_region:SL2.40ch11:1210739..1214519- go_terms:GO:0016787 functional_description:"RNA pyrophosphohydrolase (AHRD V1 ***- C9CZW5_9RHOB); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00016265g0002.1 protein AED:0.23 eAED:0.24 QI:0|0.7|0.63|0.81|1|1|11|0|336; (*GB) gi|350538319|ref|NP_001234593.1| (e_value=2e-173) myo-inositol oxygenase [Solanum lycopersicum];; (*SWP) sp|O82200|MIOX2_ARATH (e_value=3e-164) Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2;; (*TAIR) AT2G19800.1 (e_value=2e-165) | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:8531106-8533354 REVERSE LENGTH=317;; (*ITAG) Solyc12g008650.1.1 (e_value=3e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2025279-2028961 transcript_region:SL2.40ch12:2025279..2028961- go_terms:GO:0005737 functional_description:"Inositol oxygenase (AHRD V1 ***- A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0005737 NbS00016265g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|404; (*GB) gi|255551169|ref|XP_002516632.1| (e_value=0.0) glycosyltransferase, putative [Ricinus communis];; (*TAIR) AT3G10630.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:3321722-3323185 REVERSE LENGTH=487;; (*ITAG) Solyc11g006560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1204280-1205734 transcript_region:SL2.40ch11:1204280..1205734+ go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 (AHRD V1 ***- B6T775_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00008466g0006.1 protein AED:0.16 eAED:0.18 QI:9|0|0.33|1|0|0|3|157|834; (*GB) gi|225454601|ref|XP_002265002.1| (e_value=0.0) PREDICTED: tuftelin-interacting protein 11-like [Vitis vinifera];; (*SWP) sp|Q9UBB9|TFP11_HUMAN (e_value=6e-131) Tuftelin-interacting protein 11 OS=Homo sapiens GN=TFIP11 PE=1 SV=1;; (*TAIR) AT1G17070.1 (e_value=0.0) | Symbols: | GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | chr1:5837653-5840202 FORWARD LENGTH=849;; (*ITAG) Solyc10g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:753117-756148 transcript_region:SL2.40ch10:753117..756148- go_terms:GO:0005515 functional_description:"Tuftelin interacting protein 11 (AHRD V1 ***- Q8N523_HUMAN); contains Interpro domain(s) IPR014809 Tuftelin interacting protein 11 "; GO:0005515 NbS00008466g0007.1 protein AED:0.30 eAED:0.30 QI:314|0.71|0.87|1|0.42|0.5|8|389|137; (*GB) gi|40287468|gb|AAR83848.1| (e_value=2e-77) ribosomal protein PETRP [Capsicum annuum];; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=3e-74) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=2e-75) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071880.2.1 (e_value=4e-82) genomic_reference:SL2.40ch06 gene_region:40673158-40675211 transcript_region:SL2.40ch06:40673158..40675211- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00008466g0009.1 protein AED:0.38 eAED:0.57 QI:195|0|0.25|1|0|0|4|0|177; (*GB) gi|47825035|gb|AAT38805.1| (e_value=3e-22) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=5e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034053g0006.1 protein AED:0.18 eAED:0.18 QI:255|0.75|1|1|0.75|0.8|5|156|259; (*GB) gi|255542816|ref|XP_002512471.1| (e_value=2e-118) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q0WRB2|P2C73_ARATH (e_value=2e-104) Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1;; (*TAIR) AT5G27930.2 (e_value=2e-105) | Symbols: | Protein phosphatase 2C family protein | chr5:9958199-9960219 REVERSE LENGTH=373;; (*ITAG) Solyc01g100040.2.1 (e_value=7e-125) genomic_reference:SL2.40ch01 gene_region:81872312-81875388 transcript_region:SL2.40ch01:81872312..81875388- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00034053g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|0.5|2|0|82; (*GB) gi|356576819|ref|XP_003556527.1| (e_value=1e-40) PREDICTED: topless-related protein 3-like [Glycine max];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=2e-37) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=1e-38) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=4e-43) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00015106g0003.1 protein AED:0.25 eAED:0.27 QI:0|0|0|0.66|1|1|3|0|354; (*GB) gi|359482223|ref|XP_003632735.1| (e_value=3e-97) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=9e-31) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT3G57070.1 (e_value=5e-77) | Symbols: | Glutaredoxin family protein | chr3:21124174-21125427 FORWARD LENGTH=417;; (*ITAG) Solyc10g079560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60395656-60396960 transcript_region:SL2.40ch10:60395656..60396960- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LH54_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00002198g0020.1 protein AED:0.03 eAED:0.03 QI:53|0.8|0.66|1|0.8|0.66|6|0|760; (*GB) gi|225425823|ref|XP_002264918.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|O48700|PUB6_ARATH (e_value=0.0) U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2;; (*TAIR) AT1G24330.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:8631779-8634835 FORWARD LENGTH=771;; (*ITAG) Solyc05g015070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9775132-9780790 transcript_region:SL2.40ch05:9775132..9780790- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00002198g0014.1 protein AED:0.07 eAED:0.07 QI:243|0.87|0.88|1|0.87|0.77|9|454|1057; (*GB) gi|297738380|emb|CBI27581.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G01810.3 (e_value=9e-151) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921;; (*ITAG) Solyc05g015050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9762176-9768847 transcript_region:SL2.40ch05:9762176..9768847+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00002198g0023.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|1|0.5|0.66|3|0|205; (*GB) gi|297738387|emb|CBI27588.3| (e_value=5e-67) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G50940.1 (e_value=2e-62) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18934086-18935528 FORWARD LENGTH=451;; (*ITAG) Solyc05g015060.2.1 (e_value=3e-83) genomic_reference:SL2.40ch05 gene_region:9773362-9775130 transcript_region:SL2.40ch05:9773362..9775130+ go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00002198g0022.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|154; (*GB) gi|359473565|ref|XP_002265580.2| (e_value=2e-34) PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Vitis vinifera];; (*TAIR) AT3G50930.1 (e_value=6e-13) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc05g015060.2.1 (e_value=3e-64) genomic_reference:SL2.40ch05 gene_region:9773362-9775130 transcript_region:SL2.40ch05:9773362..9775130+ go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00014094g0011.1 protein AED:0.01 eAED:0.01 QI:321|0.8|0.66|1|0.6|0.66|6|405|320; (*GB) gi|90657630|gb|ABD96928.1| (e_value=6e-175) hypothetical protein [Cleome spinosa];; (*SWP) sp|Q8BGF9|S2544_MOUSE (e_value=5e-46) Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1;; (*TAIR) AT5G15640.1 (e_value=4e-171) | Symbols: | Mitochondrial substrate carrier family protein | chr5:5087590-5089677 FORWARD LENGTH=323;; (*ITAG) Solyc02g089110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45578133-45582210 transcript_region:SL2.40ch02:45578133..45582210- go_terms:GO:0022857 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- Q69FA0_PHAVU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0022857 NbS00014094g0013.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.16|0.8|0.83|6|0|240 NbS00014094g0014.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|78; (*ITAG) Solyc01g094420.2.1 (e_value=3e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00023743g0013.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.33|3|0|314; (*GB) gi|359473878|ref|XP_003631372.1| (e_value=2e-137) PREDICTED: gibberellin 20 oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q39110|GAOX1_ARATH (e_value=3e-44) Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2;; (*TAIR) AT4G25420.1 (e_value=2e-45) | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12990982-12992409 REVERSE LENGTH=377;; (*ITAG) Solyc12g013780.1.1 (e_value=3e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4584783-4587211 transcript_region:SL2.40ch12:4584783..4587211- go_terms:GO:0016491 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 ***- A9LY20_SELML); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00023743g0014.1 protein AED:0.54 eAED:0.57 QI:0|0|0|0.5|0.4|0.66|6|0|318; (*GB) gi|147773656|emb|CAN63176.1| (e_value=2e-24) hypothetical protein VITISV_029947 [Vitis vinifera];; (*TAIR) AT1G05380.2 (e_value=3e-12) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr1:1577231-1582190 FORWARD LENGTH=1138;; (*ITAG) Solyc08g078120.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59120677-59124643 transcript_region:SL2.40ch08:59120677..59124643- go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00023743g0015.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|517; (*GB) gi|255557699|ref|XP_002519879.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|P37034|Y1691_LEGPH (e_value=2e-13) Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2;; (*TAIR) AT1G31830.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc08g075710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57004882-57011338 transcript_region:SL2.40ch08:57004882..57011338+ go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME2_HELPE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00035737g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0|0.66|3|0|353; (*GB) gi|238886093|gb|ACR77528.1| (e_value=0.0) heterotrimeric G protein beta 1 subunit [Nicotiana benthamiana];; (*SWP) sp|P93340|GBLP_NICPL (e_value=0.0) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT1G18080.1 (e_value=0.0) | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40 repeat-like superfamily protein | chr1:6222325-6223901 FORWARD LENGTH=327;; (*ITAG) Solyc12g040510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:39489012-39490607 transcript_region:SL2.40ch12:39489012..39490607+ functional_description:"Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-- B6SJ21_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00035737g0007.1 protein AED:0.27 eAED:0.69 QI:0|0|0|1|0|0|2|0|64 NbS00059551g0003.1 protein AED:0.25 eAED:0.25 QI:134|1|1|1|1|1|2|600|156; (*GB) gi|82470779|gb|ABB77426.1| (e_value=9e-96) Skp1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=4e-81) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=3e-82) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=6e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00061054g0004.1 protein AED:0.13 eAED:0.13 QI:49|0.25|0.4|1|0.5|0.8|5|278|655; (*GB) gi|359496273|ref|XP_002270694.2| (e_value=2e-171) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1-like [Vitis vinifera];; (*SWP) sp|Q9LPZ3|Y1141_ARATH (e_value=3e-162) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3;; (*TAIR) AT1G11410.1 (e_value=2e-163) | Symbols: | S-locus lectin protein kinase family protein | chr1:3841286-3844284 FORWARD LENGTH=845;; (*ITAG) Solyc03g006780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1308096-1310585 transcript_region:SL2.40ch03:1308096..1310585+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR000858 S-locus glycoprotein "; GO:0019199,GO:0004674 NbS00007342g0007.1 protein AED:0.17 eAED:0.24 QI:0|0|0|0.75|0.33|0.25|4|0|329; (*GB) gi|19913105|emb|CAC84545.1| (e_value=3e-112) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=4e-29) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=9e-101) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=1e-111) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00001018g0001.1 protein AED:0.09 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|365222896|gb|AEW69800.1| (e_value=0.0) Hop-interacting protein THI038 [Solanum lycopersicum];; (*SWP) sp|Q9C8N5|STOP1_ARATH (e_value=7e-69) Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1;; (*TAIR) AT1G34370.1 (e_value=5e-70) | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12551002-12552501 FORWARD LENGTH=499;; (*ITAG) Solyc04g056320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53214442-53215563 transcript_region:SL2.40ch04:53214442..53215563+ go_terms:GO:0003700,GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *-** D7KK61_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0008270 NbS00018821g0004.1 protein AED:0.47 eAED:0.52 QI:34|0|0|1|0|0|2|0|161; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-29) hypothetical protein [Nicotiana tabacum]; NbS00010435g0010.1 protein AED:0.07 eAED:0.07 QI:184|1|1|1|0.55|0.6|10|134|536; (*GB) gi|225442050|ref|XP_002272277.1| (e_value=1e-112) PREDICTED: zinc finger CCCH domain-containing protein 62 [Vitis vinifera];; (*SWP) sp|Q338N2|C3H62_ORYSJ (e_value=1e-67) Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2;; (*TAIR) AT5G66840.1 (e_value=6e-55) | Symbols: | SAP domain-containing protein | chr5:26692922-26695296 REVERSE LENGTH=551;; (*ITAG) Solyc06g063020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36178410-36181754 transcript_region:SL2.40ch06:36178410..36181754- go_terms:GO:0003676,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 62 (AHRD V1 *--- C3H62_ORYSJ); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676,GO:0008270 NbS00010435g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|0.5|2|0|234; (*GB) gi|223049408|gb|ACM80348.1| (e_value=7e-148) cysteine proteinase [Solanum lycopersicum];; (*SWP) sp|P43296|RD19A_ARATH (e_value=2e-125) Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=1e-126) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc01g110110.2.1 (e_value=3e-150) genomic_reference:SL2.40ch01 gene_region:88650256-88653173 transcript_region:SL2.40ch01:88650256..88653173+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00010435g0007.1 protein AED:0.22 eAED:0.33 QI:192|0|0.5|1|0|0.5|2|191|95 NbS00010435g0009.1 protein AED:0.39 eAED:0.43 QI:0|0|0|1|1|1|2|0|113; (*GB) gi|329025150|gb|AEB71558.1| (e_value=1e-49) synaptobrevin/VAMP-like protein [Solanum chacoense];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=5e-50) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=3e-51) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00005287g0010.1 protein AED:0.29 eAED:0.30 QI:189|0.83|0.85|1|0.83|0.71|7|359|422; (*GB) gi|255563758|ref|XP_002522880.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=1e-74) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G38040.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc11g010890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3947873-3952034 transcript_region:SL2.40ch11:3947873..3952034- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9K9_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00005287g0002.1 protein AED:0.17 eAED:0.18 QI:124|1|0.9|1|0.22|0.1|10|389|470; (*GB) gi|256619606|emb|CAZ66649.1| (e_value=0.0) 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor [Solanum lycopersicum];; (*SWP) sp|Q6YU51|DXS2_ORYSJ (e_value=0.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1;; (*TAIR) AT4G15560.1 (e_value=0.0) | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717;; (*ITAG) Solyc11g010850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3870455-3875051 transcript_region:SL2.40ch11:3870455..3875051- go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 2 (AHRD V1 **** C7U111_SOLLC); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00011076g0013.1 protein AED:0.25 eAED:0.25 QI:82|1|1|1|1|1|4|551|152; (*GB) gi|40287492|gb|AAR83860.1| (e_value=8e-97) putative ribosomal protein [Capsicum annuum];; (*SWP) sp|P34788|RS18_ARATH (e_value=1e-92) 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1;; (*TAIR) AT4G09800.1 (e_value=9e-94) | Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152;; (*ITAG) Solyc11g005680.1.1 (e_value=3e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:502496-504749 transcript_region:SL2.40ch11:502496..504749- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S18 (AHRD V1 ***- B4G286_MAIZE); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003735,GO:0005515 NbS00011076g0012.1 protein AED:0.39 eAED:0.41 QI:0|0.2|0.5|1|1|1|6|276|161; (*GB) gi|224116060|ref|XP_002332038.1| (e_value=3e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2UGZ7|ATG1_ASPOR (e_value=4e-14) Serine/threonine-protein kinase atg1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg1 PE=3 SV=1;; (*TAIR) AT1G49180.2 (e_value=2e-31) | Symbols: | protein kinase family protein | chr1:18184814-18187444 REVERSE LENGTH=376;; (*ITAG) Solyc11g005660.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:489523-493211 transcript_region:SL2.40ch11:489523..493211- go_terms:GO:0035175 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 **** Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00011076g0019.1 protein AED:0.00 eAED:0.00 QI:615|1|1|1|1|1|2|128|71 NbS00051741g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|642; (*GB) gi|225461199|ref|XP_002283229.1| (e_value=0.0) PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00042478g0013.1 protein AED:0.19 eAED:0.19 QI:128|1|1|1|0.8|1|16|113|814; (*GB) gi|255572579|ref|XP_002527223.1| (e_value=0.0) oligopeptidase A, putative [Ricinus communis];; (*SWP) sp|P44573|OPDA_HAEIN (e_value=8e-177) Oligopeptidase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=prlC PE=3 SV=1;; (*TAIR) AT5G65620.1 (e_value=0.0) | Symbols: | Zincin-like metalloproteases family protein | chr5:26221951-26225784 FORWARD LENGTH=791;; (*ITAG) Solyc02g091580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47413078-47421457 transcript_region:SL2.40ch02:47413078..47421457- go_terms:GO:0008235,GO:0008241 functional_description:"Oligopeptidase A (AHRD V1 ***- Q9LSL3_ARATH); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0008235,GO:0008241 NbS00042478g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|0.8|0.25|0.4|5|0|160; (*GB) gi|302142098|emb|CBI19301.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=1e-35) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=2e-35) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc02g091550.1.1 (e_value=8e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00042478g0005.1 protein AED:0.25 eAED:0.25 QI:312|1|1|1|0.93|0.93|16|436|518; (*GB) gi|1707998|sp|P50433.1|GLYM_SOLTU (e_value=0.0) RecName: Full=Serine hydroxymethyltransferase, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor;; (*SWP) sp|P50433|GLYM_SOLTU (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G37930.1 (e_value=0.0) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517;; (*ITAG) Solyc02g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47400296-47406791 transcript_region:SL2.40ch02:47400296..47406791+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** C6ZJZ0_SOYBN); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00035814g0001.1 protein AED:0.18 eAED:0.18 QI:459|0.91|1|1|0.91|0.84|13|682|569; (*GB) gi|359474742|ref|XP_002266702.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|C0LGF4|FEI1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1;; (*TAIR) AT1G31420.2 (e_value=0.0) | Symbols: FEI1 | Leucine-rich repeat protein kinase family protein | chr1:11250360-11253516 FORWARD LENGTH=591;; (*ITAG) Solyc08g074760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56067158-56077961 transcript_region:SL2.40ch08:56067158..56077961+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00053497g0005.1 protein AED:0.14 eAED:0.14 QI:166|1|1|1|0.66|0.75|4|544|167; (*GB) gi|186506604|ref|NP_181476.2| (e_value=2e-59) ribonuclease H2 subunit C [Arabidopsis thaliana];; (*TAIR) AT2G39440.1 (e_value=4e-62) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:16468220-16469113 REVERSE LENGTH=162;; (*ITAG) Solyc02g069070.2.1 (e_value=4e-104) genomic_reference:SL2.40ch02 gene_region:33618808-33621536 transcript_region:SL2.40ch02:33618808..33621536- functional_description:"Ribonuclease H2 subunit C (AHRD V1 ***- C0H7J5_SALSA); contains Interpro domain(s) IPR013924 Ribonuclease H2, subunit C "; NbS00057694g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|1|1|1|4|0|431; (*GB) gi|147861513|emb|CAN81469.1| (e_value=0.0) hypothetical protein VITISV_034857 [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=8e-151) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=6e-152) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc12g056820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00049227g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|170; (*GB) gi|359485422|ref|XP_002275844.2| (e_value=2e-46) PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=2e-42) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=2e-43) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc12g010810.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3722630-3723262 transcript_region:SL2.40ch12:3722630..3723262+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00049227g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|180; (*GB) gi|356543002|ref|XP_003539952.1| (e_value=1e-113) PREDICTED: ras-related protein RABA1f-like [Glycine max];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=7e-114) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=5e-115) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc12g010790.1.1 (e_value=3e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3711266-3713629 transcript_region:SL2.40ch12:3711266..3713629- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00049227g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|316; (*GB) gi|225429088|ref|XP_002269031.1| (e_value=9e-12) PREDICTED: uncharacterized protein LOC100258411 [Vitis vinifera];; (*ITAG) Solyc12g010880.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3791120-3791812 transcript_region:SL2.40ch12:3791120..3791812- go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00025168g0003.1 protein AED:0.22 eAED:0.22 QI:2790|0.63|0.83|0.91|0.90|0.83|12|615|416; (*GB) gi|359480929|ref|XP_002267563.2| (e_value=5e-178) PREDICTED: uncharacterized protein LOC100259729 [Vitis vinifera];; (*TAIR) AT5G08450.3 (e_value=4e-159) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918;; (*ITAG) Solyc05g056340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64819036-64832773 transcript_region:SL2.40ch05:64819036..64832773- functional_description:"RXT3-like protein C1259.07 (AHRD V1 *-*- YC57_SCHPO); contains Interpro domain(s) IPR013951 Histone deacetylation protein Rxt3 "; NbS00025168g0004.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|1|1|2|0|562; (*GB) gi|224077670|ref|XP_002305354.1| (e_value=1e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08450.3 (e_value=8e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918;; (*ITAG) Solyc05g056340.2.1 (e_value=3e-144) genomic_reference:SL2.40ch05 gene_region:64819036-64832773 transcript_region:SL2.40ch05:64819036..64832773- functional_description:"RXT3-like protein C1259.07 (AHRD V1 *-*- YC57_SCHPO); contains Interpro domain(s) IPR013951 Histone deacetylation protein Rxt3 "; NbS00050736g0001.1 protein AED:0.35 eAED:0.35 QI:171|0.5|0.66|1|0.5|1|3|1146|86; (*GB) gi|11385588|gb|AAG34875.1|AF261020_3 (e_value=1e-47) putative chloroplast RNA helicase VDL isoform 3 [Nicotiana tabacum];; (*ITAG) Solyc01g079800.2.1 (e_value=5e-22) genomic_reference:SL2.40ch01 gene_region:71438380-71444159 transcript_region:SL2.40ch01:71438380..71444159- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A0YWB9_LYNSP); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00050736g0008.1 protein AED:0.20 eAED:0.20 QI:407|1|1|1|0.92|1|15|642|520; (*GB) gi|350539647|ref|NP_001233977.1| (e_value=0.0) ADP-glucose pyrophosphorylase large subunit [Solanum lycopersicum];; (*SWP) sp|P55243|GLGL3_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1;; (*TAIR) AT5G19220.1 (e_value=0.0) | Symbols: ADG2, APL1 | ADP glucose pyrophosphorylase large subunit 1 | chr5:6463931-6466775 REVERSE LENGTH=522;; (*ITAG) Solyc01g079790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71433353-71437595 transcript_region:SL2.40ch01:71433353..71437595+ go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** P93230_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00005204g0001.1 protein AED:0.28 eAED:0.44 QI:0|0|0|1|1|1|2|0|170; (*GB) gi|82623371|gb|ABB87100.1| (e_value=7e-38) unknown [Solanum tuberosum];; (*TAIR) AT5G67390.2 (e_value=1e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:26887883-26888512 REVERSE LENGTH=176;; (*ITAG) Solyc02g092590.2.1 (e_value=4e-46) genomic_reference:SL2.40ch02 gene_region:48222953-48223908 transcript_region:SL2.40ch02:48222953..48223908+ functional_description:"Os03g0604500 protein (Fragment) (AHRD V1 *-*- C7J083_ORYSJ)"; NbS00045529g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|317; (*GB) gi|374341580|gb|AEZ35207.1| (e_value=0.0) ntrax [Nicotiana tabacum];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=2e-74) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=1e-76) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc09g008250.2.1 (e_value=1e-131) genomic_reference:SL2.40ch09 gene_region:1718596-1720352 transcript_region:SL2.40ch09:1718596..1720352- go_terms:GO:0003700,GO:0005516 functional_description:"MYB transcription factor (AHRD V1 *--* Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0005516 NbS00004486g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.6|0.5|0.83|0.8|0.83|6|0|209; (*GB) gi|15219810|ref|NP_176277.1| (e_value=7e-119) AP-1 complex subunit mu [Arabidopsis thaliana];; (*SWP) sp|P35602|AP1M_CAEEL (e_value=8e-73) AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2;; (*TAIR) AT1G60780.1 (e_value=1e-121) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc06g071650.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40515207-40517639 transcript_region:SL2.40ch06:40515207..40517639- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu (AHRD V1 ***- Q7RVT3_NEUCR); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00004486g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|225456930|ref|XP_002281358.1| (e_value=7e-79) PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Vitis vinifera];; (*SWP) sp|Q9FML4|LOB_ARATH (e_value=8e-71) Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1;; (*TAIR) AT5G63090.4 (e_value=6e-72) | Symbols: LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH=186;; (*ITAG) Solyc06g071660.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40520649-40523044 transcript_region:SL2.40ch06:40520649..40523044+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00039425g0004.1 protein AED:0.09 eAED:0.09 QI:18|0.5|0|1|0.5|0.33|3|0|392; (*GB) gi|147836191|emb|CAN73178.1| (e_value=4e-127) hypothetical protein VITISV_039910 [Vitis vinifera];; (*SWP) sp|Q9FGB0|BH145_ARATH (e_value=3e-23) Transcription factor bHLH145 OS=Arabidopsis thaliana GN=BHLH145 PE=2 SV=1;; (*TAIR) AT5G50010.1 (e_value=2e-24) | Symbols: | sequence-specific DNA binding transcription factors;transcription regulators | chr5:20349556-20350491 FORWARD LENGTH=311;; (*ITAG) Solyc12g087890.1.1 (e_value=2e-152) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:61833684-61834752 transcript_region:SL2.40ch12:61833684..61834752- go_terms:GO:0003700 functional_description:"Transcription factor/ transcription regulator (AHRD V1 **** D7M240_ARALY)"; GO:0003700 NbS00017962g0002.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.8|1|0|0.2|5|915|530; (*GB) gi|225441407|ref|XP_002275246.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241837 [Vitis vinifera];; (*TAIR) AT5G06810.1 (e_value=2e-129) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2108493-2112256 FORWARD LENGTH=1141;; (*ITAG) Solyc03g063390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:31911330-31913027 transcript_region:SL2.40ch03:31911330..31913027- functional_description:"Genomic DNA chromosome 5 P1 clone MPH15 (AHRD V1 **-- Q9FG25_ARATH); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017962g0006.1 protein AED:0.25 eAED:0.51 QI:0|1|0.5|1|0.6|0.66|6|0|347; (*GB) gi|297739851|emb|CBI30033.3| (e_value=2e-137) unnamed protein product [Vitis vinifera];; (*SWP) sp|O14979|HNRDL_HUMAN (e_value=8e-24) Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3;; (*TAIR) AT3G15010.2 (e_value=2e-52) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc02g021560.2.1 (e_value=4e-58) genomic_reference:SL2.40ch02 gene_region:13906095-13908491 transcript_region:SL2.40ch02:13906095..13908491- go_terms:GO:0005515 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 **-- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00046734g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224062151|ref|XP_002300780.1| (e_value=1e-19) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LTC5|ERF98_ARATH (e_value=1e-20) Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1;; (*TAIR) AT3G23230.1 (e_value=1e-21) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139;; (*ITAG) Solyc09g066350.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60379419-60379889 transcript_region:SL2.40ch09:60379419..60379889- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00015551g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.91|0.76|1|0.91|0.92|13|0|444; (*GB) gi|237506885|gb|ACQ99195.1| (e_value=0.0) betaine aldehyde dehydrogenase [Lycium barbarum];; (*SWP) sp|Q9STS1|BADH2_ARATH (e_value=0.0) Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1;; (*TAIR) AT3G48170.1 (e_value=0.0) | Symbols: ALDH10A9 | aldehyde dehydrogenase 10A9 | chr3:17786290-17789918 REVERSE LENGTH=503;; (*ITAG) Solyc06g071290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40246444-40251568 transcript_region:SL2.40ch06:40246444..40251568- go_terms:GO:0004028 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00015551g0014.1 protein AED:0.31 eAED:0.32 QI:0|0.66|0.5|1|0.66|0.5|4|0|535; (*GB) gi|19110917|gb|AAL85347.1|AF479625_1 (e_value=0.0) EDS1-like protein [Nicotiana benthamiana];; (*TAIR) AT3G48080.1 (e_value=8e-130) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17753104-17755145 REVERSE LENGTH=629;; (*ITAG) Solyc06g071280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40242657-40246003 transcript_region:SL2.40ch06:40242657..40246003- go_terms:GO:0005515,GO:0004871 functional_description:"Enhanced disease susceptibility 1 (Fragment) (AHRD V1 **-- B2BDU7_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0004871 NbS00015551g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|192; (*GB) gi|19110917|gb|AAL85347.1|AF479625_1 (e_value=2e-132) EDS1-like protein [Nicotiana benthamiana];; (*TAIR) AT3G48080.1 (e_value=3e-52) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17753104-17755145 REVERSE LENGTH=629;; (*ITAG) Solyc06g071280.2.1 (e_value=2e-98) genomic_reference:SL2.40ch06 gene_region:40242657-40246003 transcript_region:SL2.40ch06:40242657..40246003- go_terms:GO:0005515,GO:0004871 functional_description:"Enhanced disease susceptibility 1 (Fragment) (AHRD V1 **-- B2BDU7_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0004871 NbS00015551g0017.1 protein AED:0.07 eAED:0.10 QI:0|0|0|1|0|0.5|2|0|300; (*GB) gi|113205160|gb|ABI34275.1| (e_value=1e-100) hypothetical protein LES1_20t00015 [Solanum lycopersicum];; (*SWP) sp|P34909|NOT4_YEAST (e_value=7e-12) General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT2 PE=1 SV=1;; (*TAIR) AT5G62910.1 (e_value=1e-40) | Symbols: | RING/U-box superfamily protein | chr5:25250830-25252015 FORWARD LENGTH=327;; (*ITAG) Solyc06g071270.2.1 (e_value=2e-103) genomic_reference:SL2.40ch06 gene_region:40237668-40241449 transcript_region:SL2.40ch06:40237668..40241449+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00015551g0008.1 protein AED:0.30 eAED:0.31 QI:31|0.66|0.5|1|1|1|4|0|72; (*GB) gi|62183959|gb|AAX73300.1| (e_value=1e-31) putative pollen specific LIM domain-containing protein [Solanum lycopersicum];; (*SWP) sp|P29675|SF3_HELAN (e_value=8e-18) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=4e-19) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc06g071310.2.1 (e_value=3e-34) genomic_reference:SL2.40ch06 gene_region:40271283-40274530 transcript_region:SL2.40ch06:40271283..40274530+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00013961g0009.1 protein AED:0.22 eAED:0.22 QI:404|1|0.5|1|1|1|4|0|412; (*GB) gi|82581289|dbj|BAE48709.1| (e_value=9e-159) ZIP family metal transporter [Chengiopanax sciadophylloides];; (*SWP) sp|O04089|ZIP4_ARATH (e_value=2e-138) Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1;; (*TAIR) AT1G10970.1 (e_value=7e-139) | Symbols: ZIP4, ATZIP4 | zinc transporter 4 precursor | chr1:3665201-3666933 REVERSE LENGTH=408;; (*ITAG) Solyc08g065190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50183141-50186092 transcript_region:SL2.40ch08:50183141..50186092+ go_terms:GO:0005385 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005385 NbS00013961g0010.1 protein AED:0.29 eAED:0.29 QI:189|1|1|1|0.75|0.8|5|350|196; (*GB) gi|297742438|emb|CBI34587.3| (e_value=5e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q16G71|MED10_AEDAE (e_value=4e-13) Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1;; (*TAIR) AT1G26665.2 (e_value=5e-64) | Symbols: | Mediator complex, subunit Med10 | chr1:9214510-9215426 FORWARD LENGTH=189;; (*ITAG) Solyc08g065160.2.1 (e_value=2e-82) genomic_reference:SL2.40ch08 gene_region:50131811-50135402 transcript_region:SL2.40ch08:50131811..50135402- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 10 (AHRD V1 *-*- C1BXR0_ESOLU); contains Interpro domain(s) IPR019145 Mediator complex, subunit Med10 "; GO:0016592 NbS00013961g0011.1 protein AED:0.15 eAED:0.21 QI:0|0|0|1|0|0|2|0|115; (*ITAG) Solyc10g009060.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00040864g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0|0.33|3|0|97; (*GB) gi|30385425|gb|AAP23938.1| (e_value=1e-25) one helix protein [Ipomoea nil];; (*TAIR) AT5G02120.1 (e_value=1e-24) | Symbols: OHP | one helix protein | chr5:419144-419633 FORWARD LENGTH=110;; (*ITAG) Solyc09g011010.2.1 (e_value=1e-30) genomic_reference:SL2.40ch09 gene_region:4358267-4359595 transcript_region:SL2.40ch09:4358267..4359595+ functional_description:"One helix protein (AHRD V1 ***- Q84N30_IPONI)"; NbS00040864g0013.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|1|1|3|0|199; (*GB) gi|359482094|ref|XP_002271184.2| (e_value=2e-42) PREDICTED: putative cyclin-D7-1-like [Vitis vinifera];; (*TAIR) AT4G03270.1 (e_value=4e-11) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc05g006050.2.1 (e_value=1e-13) genomic_reference:SL2.40ch05 gene_region:786643-789497 transcript_region:SL2.40ch05:786643..789497- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin D1 (AHRD V1 **** Q8GVE0_HELTU); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00040864g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|143; (*GB) gi|297740339|emb|CBI30521.3| (e_value=5e-53) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=2e-36) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT5G02140.1 (e_value=4e-49) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:423384-424437 FORWARD LENGTH=294;; (*ITAG) Solyc10g084840.1.1 (e_value=6e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63557692-63558575 transcript_region:SL2.40ch10:63557692..63558575- functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9LZL8_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00040864g0012.1 protein AED:0.06 eAED:0.06 QI:289|1|1|1|0.8|0.66|6|317|379; (*GB) gi|225440422|ref|XP_002269511.1| (e_value=0.0) PREDICTED: hsp70-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q0V4C4|FES1_PHANO (e_value=5e-18) Hsp70 nucleotide exchange factor FES1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=FES1 PE=3 SV=1;; (*TAIR) AT3G09350.1 (e_value=0.0) | Symbols: Fes1A | Fes1A | chr3:2871216-2873109 FORWARD LENGTH=363;; (*ITAG) Solyc09g011030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4368272-4373182 transcript_region:SL2.40ch09:4368272..4373182- go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- C8V0S6_EMENI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00040864g0011.1 protein AED:0.30 eAED:0.30 QI:158|0.88|1|1|1|1|10|749|353; (*GB) gi|224063175|ref|XP_002301027.1| (e_value=1e-119) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02130.1 (e_value=4e-97) | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:419747-421958 REVERSE LENGTH=420;; (*ITAG) Solyc09g011020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4359339-4365508 transcript_region:SL2.40ch09:4359339..4365508- functional_description:"Kinesin light chain-like protein (AHRD V1 *-*- D8LTR1_ECTSI)"; NbS00014759g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.16|1|0.4|0.5|6|0|229; (*GB) gi|374250711|gb|AEY99978.1| (e_value=1e-127) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=2e-106) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.1 (e_value=2e-110) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28538906-28540448 FORWARD LENGTH=323;; (*ITAG) Solyc04g081910.2.1 (e_value=9e-118) genomic_reference:SL2.40ch04 gene_region:63365446-63370378 transcript_region:SL2.40ch04:63365446..63370378+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00024732g0004.1 protein AED:0.15 eAED:0.15 QI:320|1|1|1|0.66|0.75|4|232|329; (*GB) gi|225453897|ref|XP_002278913.1| (e_value=3e-132) PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=5e-90) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G45400.1 (e_value=3e-102) | Symbols: BEN1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:18703960-18706235 REVERSE LENGTH=364;; (*ITAG) Solyc01g094070.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:77418718-77420479 transcript_region:SL2.40ch01:77418718..77420479+ go_terms:GO:0016614,GO:0033729 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 **** D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016614,GO:0033729 NbS00013566g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.77|1|1|0.88|9|0|1158; (*GB) gi|359477035|ref|XP_002265701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265343 [Vitis vinifera];; (*SWP) sp|A6QLC7|TPC11_BOVIN (e_value=7e-41) Trafficking protein particle complex subunit 11 OS=Bos taurus GN=TRAPPC11 PE=2 SV=1;; (*TAIR) AT5G65950.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190;; (*ITAG) Solyc02g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40562681-40571418 transcript_region:SL2.40ch02:40562681..40571418+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY7_ARATH); contains Interpro domain(s) IPR012880 Protein of unknown function DUF1683, C-terminal "; NbS00022132g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|177 NbS00020832g0003.1 protein AED:0.17 eAED:0.17 QI:152|0.66|0.85|1|0.5|0.71|7|256|198; (*GB) gi|350534764|ref|NP_001234670.1| (e_value=3e-83) MADS-box transcription factor [Solanum lycopersicum];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=8e-56) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT2G03710.3 (e_value=4e-56) | Symbols: SEP4, AGL3 | K-box region and MADS-box transcription factor family protein | chr2:1129622-1131242 FORWARD LENGTH=187;; (*ITAG) Solyc05g012020.2.1 (e_value=5e-86) genomic_reference:SL2.40ch05 gene_region:5225203-5230962 transcript_region:SL2.40ch05:5225203..5230962- go_terms:GO:0003700,GO:0046982 functional_description:"MADS-box transcription factor MADS-MC (AHRD V1 *-** Q8S4L5_SOLLC); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700,GO:0046982 NbS00020832g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.5|1|1|0|0|3|66|95; (*GB) gi|4102113|gb|AAD01422.1| (e_value=8e-36) NAP1-2 [Nicotiana tabacum];; (*SWP) sp|P35631|AP1_ARATH (e_value=7e-35) Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2;; (*TAIR) AT1G69120.1 (e_value=5e-36) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256;; (*ITAG) Solyc05g056620.1.1 (e_value=1e-36) genomic_reference:SL2.40ch05 gene_region:5216722-5226350 transcript_region:SL2.40ch05:5216722..5226350- go_terms:GO:0046982 functional_description:"Myocyte-specific enhancer factor 2D (AHRD V1 *-*- MEF2D_HUMAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0046982 NbS00003962g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.57|1|1|1|7|0|344; (*GB) gi|255571703|ref|XP_002526795.1| (e_value=3e-90) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G13560.1 (e_value=2e-71) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | chr5:4361579-4366318 REVERSE LENGTH=679;; (*ITAG) Solyc04g010220.2.1 (e_value=1e-141) genomic_reference:SL2.40ch04 gene_region:3536536-3549046 transcript_region:SL2.40ch04:3536536..3549046+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003962g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.09|1|1|11|477|217; (*GB) gi|297736434|emb|CBI25305.3| (e_value=3e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G13560.1 (e_value=4e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | chr5:4361579-4366318 REVERSE LENGTH=679;; (*ITAG) Solyc04g010220.2.1 (e_value=1e-113) genomic_reference:SL2.40ch04 gene_region:3536536-3549046 transcript_region:SL2.40ch04:3536536..3549046+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033012g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|67 NbS00018463g0003.1 protein AED:0.25 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|83284003|gb|ABC01909.1| (e_value=3e-34) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=1e-31) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=8e-33) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=7e-37) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00018463g0012.1 protein AED:0.11 eAED:0.11 QI:693|1|1|1|1|1|7|269|178; (*GB) gi|356523747|ref|XP_003530496.1| (e_value=9e-78) PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max];; (*TAIR) AT2G26590.3 (e_value=4e-53) | Symbols: RPN13 | regulatory particle non-ATPase 13 | chr2:11311182-11314717 REVERSE LENGTH=300;; (*ITAG) Solyc07g017400.2.1 (e_value=7e-105) genomic_reference:SL2.40ch07 gene_region:6881530-6896165 transcript_region:SL2.40ch07:6881530..6896165+ go_terms:GO:0008538,GO:0070628 functional_description:"Proteasomal ubiquitin receptor ADRM1-like protein (AHRD V1 *-*- D0NYK6_PHYIN); contains Interpro domain(s) IPR006773 Adhesion regulating molecule "; GO:0008538,GO:0070628 NbS00018463g0013.1 protein AED:0.52 eAED:0.64 QI:36|0|0|1|0|0|2|0|28 NbS00018463g0105.1 protein AED:0.19 eAED:0.19 QI:107|1|1|1|0.86|0.93|16|293|628 NbS00018463g0205.1 protein AED:0.13 eAED:0.13 QI:157|0.8|0.66|1|0.8|0.5|6|0|359 NbS00018463g0204.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|71 NbS00008692g0011.1 protein AED:0.03 eAED:0.03 QI:346|1|1|1|1|1|3|497|862; (*GB) gi|350534654|ref|NP_001233896.1| (e_value=0.0) trehalose-6-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9ZV48|TPS11_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 OS=Arabidopsis thaliana GN=TPS11 PE=2 SV=1;; (*TAIR) AT2G18700.1 (e_value=0.0) | Symbols: ATTPS11, TPS11, ATTPSB | trehalose phosphatase/synthase 11 | chr2:8109043-8111799 FORWARD LENGTH=862;; (*ITAG) Solyc07g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1301353-1304574 transcript_region:SL2.40ch07:1301353..1304574+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** D2REU5_ARCPA); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00008692g0015.1 protein AED:0.20 eAED:0.20 QI:81|1|1|1|0.28|0.37|8|1346|93; (*GB) gi|37983647|gb|AAR06293.1| (e_value=5e-14) adenylosuccinate lyase [Nicotiana tabacum];; (*ITAG) Solyc07g006530.2.1 (e_value=3e-16) genomic_reference:SL2.40ch07 gene_region:1326181-1332288 transcript_region:SL2.40ch07:1326181..1332288+ go_terms:GO:0005515 functional_description:"Adenylosuccinate lyase (AHRD V1 ***- Q6T7E9_TOBAC); contains Interpro domain(s) IPR004769 Adenylosuccinate lyase "; GO:0005515 NbS00008692g0009.1 protein AED:0.34 eAED:0.34 QI:329|1|1|1|0.63|0.75|12|224|483; (*GB) gi|255581896|ref|XP_002531747.1| (e_value=0.0) diacylglycerol kinase, alpha, putative [Ricinus communis];; (*SWP) sp|Q9R1C6|DGKE_MOUSE (e_value=2e-36) Diacylglycerol kinase epsilon OS=Mus musculus GN=Dgke PE=2 SV=1;; (*TAIR) AT4G30340.1 (e_value=0.0) | Symbols: ATDGK7, DGK7 | diacylglycerol kinase 7 | chr4:14838465-14840941 REVERSE LENGTH=492;; (*ITAG) Solyc06g009270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3226578-3236590 transcript_region:SL2.40ch06:3226578..3236590- go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 7 (AHRD V1 **** B0KYU1_ARATH); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0004143 NbS00006500g0014.1 protein AED:0.35 eAED:0.35 QI:0|0|0.25|0.5|0.66|0.5|4|508|164 NbS00006500g0016.1 protein AED:0.01 eAED:0.01 QI:0|0.33|0.25|1|0.33|0.25|4|313|995; (*GB) gi|359492994|ref|XP_002283604.2| (e_value=0.0) PREDICTED: receptor-like protein kinase HAIKU2-like [Vitis vinifera];; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=0.0) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G09970.1 (e_value=0.0) | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like protein kinase family protein | chr1:3252408-3255428 FORWARD LENGTH=976;; (*ITAG) Solyc04g076990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59540573-59542894 transcript_region:SL2.40ch04:59540573..59542894+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006500g0012.1 protein AED:0.16 eAED:0.16 QI:135|1|0.5|1|0|0|2|0|350; (*GB) gi|224057194|ref|XP_002299166.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|D3YYI7|RN217_MOUSE (e_value=5e-19) Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus GN=Rnf217 PE=3 SV=2;; (*TAIR) AT3G14250.1 (e_value=7e-59) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc04g077000.2.1 (e_value=1e-159) genomic_reference:SL2.40ch04 gene_region:59546873-59549624 transcript_region:SL2.40ch04:59546873..59549624+ go_terms:GO:0008270 functional_description:"Predicted E3 ubiquitin ligase (AHRD V1 **-- Q2UQ22_ASPOR); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00016687g0004.1 protein AED:0.10 eAED:0.13 QI:0|0|0|1|1|1|2|0|447; (*GB) gi|397567|emb|CAA81057.1| (e_value=0.0) UDP rhamnose: anthocyanidin-3-glucoside rhamnosyltransferase [Petunia x hybrida];; (*SWP) sp|Q43716|UFOG_PETHY (e_value=0.0) Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT PE=2 SV=1;; (*TAIR) AT5G54010.1 (e_value=1e-107) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:21919819-21921180 REVERSE LENGTH=453;; (*ITAG) Solyc09g059170.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:49172213-49172944 transcript_region:SL2.40ch09:49172213..49172944- go_terms:GO:0047209 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 **** B6SU01_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00045998g0004.1 protein AED:0.33 eAED:0.34 QI:258|0.88|0.83|1|0.70|0.72|18|0|795; (*GB) gi|297734394|emb|CBI15641.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54122|RNJ_CORGL (e_value=3e-80) Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=Cgl1970 PE=3 SV=2;; (*TAIR) AT5G63420.1 (e_value=0.0) | Symbols: emb2746 | RNA-metabolising metallo-beta-lactamase family protein | chr5:25400515-25405807 FORWARD LENGTH=911;; (*ITAG) Solyc03g111260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55921587-55934149 transcript_region:SL2.40ch03:55921587..55934149+ go_terms:GO:0003824 functional_description:"Metallo-beta-lactamase family protein (AHRD V1 *-*- A3ERL5_9BACT); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00010386g0017.1 protein AED:0.17 eAED:0.17 QI:689|1|0.5|1|1|1|2|0|232; (*GB) gi|359806055|ref|NP_001241435.1| (e_value=5e-83) uncharacterized protein LOC100808666 [Glycine max];; (*TAIR) AT5G05830.1 (e_value=2e-59) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc09g011770.2.1 (e_value=1e-114) genomic_reference:SL2.40ch09 gene_region:5061936-5065593 transcript_region:SL2.40ch09:5061936..5065593- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00010386g0013.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.8|1|1|5|0|270; (*GB) gi|356526619|ref|XP_003531914.1| (e_value=5e-40) PREDICTED: uncharacterized protein LOC100805671 [Glycine max];; (*TAIR) AT1G07730.2 (e_value=2e-30) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:2397527-2398696 REVERSE LENGTH=389;; (*ITAG) Solyc05g054780.1.1 (e_value=1e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63765664-63766338 transcript_region:SL2.40ch05:63765664..63766338- functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010386g0018.1 protein AED:0.36 eAED:0.36 QI:96|1|0.83|1|0.4|0.66|6|440|80; (*GB) gi|350537255|ref|NP_001234286.1| (e_value=2e-48) small zinc finger-like protein [Solanum lycopersicum];; (*SWP) sp|Q9ZW33|TIM10_ARATH (e_value=2e-36) Mitochondrial import inner membrane translocase subunit Tim10 OS=Arabidopsis thaliana GN=TIM10 PE=2 SV=1;; (*TAIR) AT2G29530.2 (e_value=1e-37) | Symbols: TIM10 | Tim10/DDP family zinc finger protein | chr2:12641026-12642243 REVERSE LENGTH=83;; (*ITAG) Solyc09g011760.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:5050091-5055758 transcript_region:SL2.40ch09:5050091..5055758- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim10 (AHRD V1 ***- TIM10_ARATH); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00010386g0020.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|10|185|491; (*GB) gi|225440554|ref|XP_002276280.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23823099 REVERSE LENGTH=489;; (*ITAG) Solyc09g011750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5045721-5050019 transcript_region:SL2.40ch09:5045721..5050019+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00010386g0021.1 protein AED:0.19 eAED:0.19 QI:566|1|1|1|0.84|0.78|14|575|314; (*GB) gi|356504323|ref|XP_003520946.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100815011 [Glycine max];; (*TAIR) AT2G37940.1 (e_value=5e-179) | Symbols: AtIPCS2 | Arabidopsis Inositol phosphorylceramide synthase 2 | chr2:15877169-15879411 FORWARD LENGTH=305;; (*ITAG) Solyc09g011740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5033862-5037954 transcript_region:SL2.40ch09:5033862..5037954+ go_terms:GO:0045140 functional_description:"Phosphatidylcholine:ceramide cholinephosphotransferase 1 (AHRD V1 *-*- SMS1_RAT)"; GO:0045140 NbS00010386g0002.1 protein AED:0.61 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|106 NbS00010386g0025.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|77 NbS00010386g0014.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|0|1|0|71; (*ITAG) Solyc09g011780.2.1 (e_value=4e-25) genomic_reference:SL2.40ch09 gene_region:5070696-5075388 transcript_region:SL2.40ch09:5070696..5075388- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R080_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00011766g0021.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|1|1|4|0|394; (*GB) gi|77999245|gb|ABB16969.1| (e_value=5e-131) unknown [Solanum tuberosum];; (*SWP) sp|Q9SF40|RL4A_ARATH (e_value=1e-124) 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=7e-126) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=8e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00011766g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.57|1|0.83|0.71|7|493|214; (*GB) gi|255565866|ref|XP_002523922.1| (e_value=1e-65) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|P47927|AP2_ARATH (e_value=3e-54) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=2e-55) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc10g084340.1.1 (e_value=8e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63251955-63255101 transcript_region:SL2.40ch10:63251955..63255101- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00011766g0020.1 protein AED:0.34 eAED:0.34 QI:0|1|0.77|1|0.75|0.77|9|461|294; (*GB) gi|198400321|gb|ACH87169.1| (e_value=3e-130) MYB transcription factor [Camellia sinensis];; (*SWP) sp|Q6R0H0|ASG4_ARATH (e_value=5e-67) Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1;; (*TAIR) AT3G09600.1 (e_value=4e-101) | Symbols: | Homeodomain-like superfamily protein | chr3:2946459-2948270 FORWARD LENGTH=298;; (*ITAG) Solyc10g084370.1.1 (e_value=6e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63264581-63268780 transcript_region:SL2.40ch10:63264581..63268780- go_terms:GO:0003677 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-- A1DR87_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00011766g0014.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0|1|1|1|5|0|170; (*GB) gi|77416951|gb|ABA81871.1| (e_value=1e-49) unknown [Solanum tuberosum];; (*SWP) sp|Q0JHZ2|C3H11_ORYSJ (e_value=1e-42) Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2;; (*TAIR) AT2G20280.1 (e_value=4e-31) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:8740054-8742349 REVERSE LENGTH=371;; (*ITAG) Solyc09g007230.2.1 (e_value=2e-52) genomic_reference:SL2.40ch09 gene_region:832874-838682 transcript_region:SL2.40ch09:832874..838682+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 15 (AHRD V1 *-*- B9ELB3_SALSA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00011766g0022.1 protein AED:0.45 eAED:0.48 QI:0|0.25|0.4|1|0.25|0.4|5|1|100 NbS00011766g0024.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|3|0|784; (*GB) gi|169674674|gb|ACA64703.1| (e_value=0.0) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-147) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=7e-160) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00007188g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|353; (*GB) gi|224138502|ref|XP_002322830.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37400.1 (e_value=2e-61) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15696365-15697366 REVERSE LENGTH=333;; (*ITAG) Solyc10g085900.1.1 (e_value=2e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64252187-64253107 transcript_region:SL2.40ch10:64252187..64253107+ go_terms:GO:0005488 functional_description:"Tetratricopeptide TPR_2 repeat protein (AHRD V1 **-- B4B1G0_9CHRO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00007188g0015.1 protein AED:0.01 eAED:0.01 QI:215|1|1|1|0.5|0.66|3|615|193; (*GB) gi|255553945|ref|XP_002518013.1| (e_value=3e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80813|YC20L_ARATH (e_value=5e-27) Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2;; (*TAIR) AT3G56830.1 (e_value=1e-45) | Symbols: | Protein of unknown function (DUF565) | chr3:21042755-21043840 REVERSE LENGTH=230;; (*ITAG) Solyc10g085930.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64266373-64268978 transcript_region:SL2.40ch10:64266373..64268978- functional_description:"Ycf20-like protein (AHRD V1 *-*- YC20L_ARATH); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00007188g0012.1 protein AED:0.13 eAED:0.13 QI:35|0.66|0.71|1|0.83|0.85|7|256|236; (*GB) gi|356534854|ref|XP_003535966.1| (e_value=1e-102) PREDICTED: inhibitor of growth protein 4-like [Glycine max];; (*SWP) sp|Q9LIQ6|ING1_ARATH (e_value=4e-87) PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1;; (*TAIR) AT3G24010.1 (e_value=3e-88) | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger superfamily protein | chr3:8676120-8678186 REVERSE LENGTH=234;; (*ITAG) Solyc09g091190.2.1 (e_value=2e-127) genomic_reference:SL2.40ch09 gene_region:65856500-65861321 transcript_region:SL2.40ch09:65856500..65861321- go_terms:GO:0003713 functional_description:"Inhibitor of growth protein 5 (AHRD V1 *-*- B6T7N2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003713 NbS00007188g0013.1 protein AED:0.19 eAED:0.19 QI:369|0.33|0.5|1|0.33|0.25|4|0|257; (*GB) gi|356536887|ref|XP_003536964.1| (e_value=4e-41) PREDICTED: uncharacterized protein LOC100797952 [Glycine max];; (*TAIR) AT3G53530.1 (e_value=1e-14) | Symbols: NAKR3 | Chloroplast-targeted copper chaperone protein | chr3:19845199-19846583 FORWARD LENGTH=247;; (*ITAG) Solyc10g085910.1.1 (e_value=8e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64253897-64256291 transcript_region:SL2.40ch10:64253897..64256291- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q84TB9_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00007188g0018.1 protein AED:0.27 eAED:0.28 QI:0|0.83|0.71|1|0.83|0.71|7|0|403; (*GB) gi|48093467|gb|AAT40110.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 4 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=4e-138) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G53520.1 (e_value=0.0) | Symbols: UXS1, ATUXS1 | UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=435;; (*ITAG) Solyc10g085920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64259534-64264315 transcript_region:SL2.40ch10:64259534..64264315- go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_KLEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00051526g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|310892572|gb|ADP37428.1| (e_value=2e-24) ethylene-responsive-element-binding factor 13 [Petunia x hybrida];; (*SWP) sp|Q9LTC6|ERF95_ARATH (e_value=3e-21) Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1;; (*TAIR) AT3G23220.1 (e_value=2e-22) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8287969-8288388 FORWARD LENGTH=139;; (*ITAG) Solyc03g005500.1.1 (e_value=3e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:383586-383975 transcript_region:SL2.40ch03:383586..383975+ go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 14 (AHRD V1 **** ERF97_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbC24306746g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|147801890|emb|CAN75056.1| (e_value=1e-63) hypothetical protein VITISV_002627 [Vitis vinifera];; (*SWP) sp|Q9M3B9|AB20B_ARATH (e_value=1e-62) ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1;; (*TAIR) AT3G55320.1 (e_value=9e-64) | Symbols: PGP20 | P-glycoprotein 20 | chr3:20507391-20513393 REVERSE LENGTH=1408;; (*ITAG) Solyc04g010310.2.1 (e_value=6e-67) genomic_reference:SL2.40ch04 gene_region:3631081-3639205 transcript_region:SL2.40ch04:3631081..3639205+ go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *-** YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00031787g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|595; (*ITAG) Solyc01g098120.2.1 (e_value=2e-124) genomic_reference:SL2.40ch01 gene_region:80481254-80482597 transcript_region:SL2.40ch01:80481254..80482597+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031787g0006.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|255539621|ref|XP_002510875.1| (e_value=7e-37) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9LVB8|CXE20_ARATH (e_value=1e-33) Probable carboxylesterase 120 OS=Arabidopsis thaliana GN=CXE20 PE=2 SV=1;; (*TAIR) AT5G62180.1 (e_value=1e-34) | Symbols: AtCXE20, CXE20 | carboxyesterase 20 | chr5:24978866-24979849 REVERSE LENGTH=327;; (*ITAG) Solyc01g098140.2.1 (e_value=7e-62) genomic_reference:SL2.40ch01 gene_region:80484699-80487950 transcript_region:SL2.40ch01:80484699..80487950+ go_terms:GO:0008152 functional_description:"Neutral cholesterol ester hydrolase 1 (AHRD V1 *--- NCEH1_BOVIN); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00031787g0009.1 protein AED:0.20 eAED:0.20 QI:314|1|1|1|0.84|0.78|14|932|447; (*GB) gi|359487917|ref|XP_002271452.2| (e_value=0.0) PREDICTED: acyltransferase-like protein At1g54570, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=1e-145) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1;; (*TAIR) AT1G54570.1 (e_value=1e-146) | Symbols: | Esterase/lipase/thioesterase family protein | chr1:20380649-20384953 REVERSE LENGTH=704;; (*ITAG) Solyc01g098110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80465152-80480438 transcript_region:SL2.40ch01:80465152..80480438+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0003824 NbS00045820g0004.1 protein AED:0.14 eAED:0.16 QI:212|0.5|0.66|1|0|0.33|3|0|685; (*GB) gi|113205208|gb|AAT39951.2| (e_value=2e-141) Disease resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-135) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=7e-73) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc02g070410.1.1 (e_value=1e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34716709-34719108 transcript_region:SL2.40ch02:34716709..34719108+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00019253g0007.1 protein AED:0.09 eAED:0.09 QI:139|1|1|1|1|1|2|644|190; (*GB) gi|255572337|ref|XP_002527107.1| (e_value=1e-80) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71780.1 (e_value=2e-73) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26995406-26996638 REVERSE LENGTH=197;; (*ITAG) Solyc04g072120.2.1 (e_value=8e-118) genomic_reference:SL2.40ch04 gene_region:56747481-56750237 transcript_region:SL2.40ch04:56747481..56750237- functional_description:"Unknown Protein (AHRD V1)"; NbS00019253g0002.1 protein AED:0.17 eAED:0.17 QI:1|-1|0|1|-1|0|1|0|70 NbS00012564g0001.1 protein AED:0.09 eAED:0.11 QI:646|0.85|0.87|1|0.85|0.75|8|346|629; (*GB) gi|225427524|ref|XP_002265127.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT20 [Vitis vinifera];; (*SWP) sp|Q94II3|PMTL_ARATH (e_value=0.0) Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1;; (*TAIR) AT4G19120.2 (e_value=0.0) | Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600;; (*ITAG) Solyc08g075870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57127248-57130726 transcript_region:SL2.40ch08:57127248..57130726+ functional_description:"Dehydration-responsive family protein-like (AHRD V1 **-- Q6EP94_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00012564g0022.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0|0.5|0.66|0.75|4|0|102; (*GB) gi|255557781|ref|XP_002519920.1| (e_value=9e-47) Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9CA23|UFM1_ARATH (e_value=4e-47) Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1;; (*TAIR) AT1G77710.1 (e_value=3e-48) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206750-29207895 FORWARD LENGTH=93;; (*ITAG) Solyc08g075780.2.1 (e_value=3e-49) genomic_reference:SL2.40ch08 gene_region:57060353-57063186 transcript_region:SL2.40ch08:57060353..57063186+ go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier 1 (AHRD V1 ***- B6SXA8_MAIZE); contains Interpro domain(s) IPR005375 Ubiquitin-like, Ufm1 "; GO:0005515 NbS00012564g0023.1 protein AED:0.07 eAED:0.07 QI:112|0.5|0.33|1|0.5|0.33|3|0|553; (*GB) gi|225450265|ref|XP_002269745.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242579 [Vitis vinifera];; (*TAIR) AT2G44230.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF946) | chr2:18286537-18288247 FORWARD LENGTH=542;; (*ITAG) Solyc08g075790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57063208-57065206 transcript_region:SL2.40ch08:57063208..57065206- functional_description:"Vacuolar sorting protein (AHRD V1 *--- C0S0X8_PARBP); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00012564g0026.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|0|0|2|0|146; (*GB) gi|302748469|gb|ADL63715.1| (e_value=2e-88) NADH dehydrogenase subunit 5 [Tamarix sp. Qiu 95034];; (*SWP) sp|P29388|NU5M_ARATH (e_value=1e-80) NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana GN=ND5 PE=2 SV=3;; (*ITAG) ATMG00665.1 (e_value=2e-74) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669;; (*ITAG) Solyc00g013140.1.1 (e_value=1e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10682531-10684357 transcript_region:SL2.40ch00:10682531..10684357- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit 5 (Fragment) (AHRD V1 ***- A1XJP5_SIMCH); contains Interpro domain(s) IPR003945 NADH-plastoquinone oxidoreductase, chain 5 "; GO:0055114 NbS00012564g0024.1 protein AED:0.41 eAED:0.48 QI:0|0|0|0.8|0|0|5|0|239; (*GB) gi|57013948|ref|YP_173421.1| (e_value=2e-36) hypothetical protein NitaMp079 [Nicotiana tabacum];; (*ITAG) Solyc03g064040.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:34764792-34765055 transcript_region:SL2.40ch03:34764792..34765055- functional_description:"Unknown Protein (AHRD V1)"; NbS00012564g0025.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0|2|0|118; (*GB) gi|334832650|gb|AEH04464.1| (e_value=6e-41) NADH dehydrogenase subunit 5 [Chrysobalanus icaco];; (*SWP) sp|Q37680|NU5M_WHEAT (e_value=2e-38) NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum GN=ND5 PE=3 SV=1;; (*ITAG) ATMG00665.1 (e_value=8e-40) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669;; (*ITAG) Solyc00g013140.1.1 (e_value=7e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10682531-10684357 transcript_region:SL2.40ch00:10682531..10684357- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit 5 (Fragment) (AHRD V1 ***- A1XJP5_SIMCH); contains Interpro domain(s) IPR003945 NADH-plastoquinone oxidoreductase, chain 5 "; GO:0055114 NbS00028587g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|0.33|0.25|4|0|132; (*GB) gi|225430458|ref|XP_002285487.1| (e_value=4e-75) PREDICTED: UPF0480 protein At4g32130 [Vitis vinifera];; (*SWP) sp|Q8VY97|Y4213_ARATH (e_value=8e-59) UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1;; (*TAIR) AT2G25310.1 (e_value=4e-61) | Symbols: | Protein of unknown function (DUF2012) | chr2:10777436-10779123 REVERSE LENGTH=210;; (*ITAG) Solyc06g065930.2.1 (e_value=8e-85) genomic_reference:SL2.40ch06 gene_region:37716344-37719317 transcript_region:SL2.40ch06:37716344..37719317- go_terms:GO:0030246 functional_description:"C15orf24 homolog (AHRD V1 ***- C1BJZ2_OSMMO); contains Interpro domain(s) IPR019008 Protein of unknown function DUF2012 "; GO:0030246 NbS00020108g0005.1 protein AED:0.29 eAED:0.29 QI:117|0.5|0.6|1|0.5|0.4|5|293|213; (*GB) gi|55294668|emb|CAH69231.1| (e_value=1e-51) putative ML domain protein [Nicotiana glauca];; (*TAIR) AT3G11780.2 (e_value=1e-36) | Symbols: | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | chr3:3724326-3725476 REVERSE LENGTH=171;; (*ITAG) Solyc10g081800.1.1 (e_value=7e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62114139-62116017 transcript_region:SL2.40ch10:62114139..62116017+ functional_description:"Phosphatidylglycerol/phosphatidylinositol transfer protein (AHRD V1 ***- C5M4G5_CANTT); contains Interpro domain(s) IPR003172 MD-2-related lipid-recognition "; NbS00025696g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.84|0.78|0.92|0.69|0.71|14|390|515; (*GB) gi|356535254|ref|XP_003536163.1| (e_value=6e-178) PREDICTED: HIV Tat-specific factor 1 homolog [Glycine max];; (*SWP) sp|O43719|HTSF1_HUMAN (e_value=5e-36) HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1;; (*TAIR) AT5G16260.1 (e_value=4e-162) | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:5311363-5315496 FORWARD LENGTH=519;; (*ITAG) Solyc11g008700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2876416-2885934 transcript_region:SL2.40ch11:2876416..2885934- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor U2AF-associated protein (AHRD V1 *--- C0NKB4_AJECG); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00025696g0004.1 protein AED:0.62 eAED:0.75 QI:0|0|0|0.25|1|1|12|0|596; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-21) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00022376g0001.1 protein AED:0.03 eAED:0.05 QI:38|0.66|0.75|1|1|1|4|0|372; (*GB) gi|297738229|emb|CBI27430.3| (e_value=6e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81755|PER48_ARATH (e_value=2e-74) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=1e-64) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc02g085930.2.1 (e_value=4e-176) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00022376g0006.1 protein AED:0.35 eAED:0.36 QI:124|0.72|0.75|1|0.72|0.83|12|0|355; (*GB) gi|1749827|emb|CAA96529.1| (e_value=0.0) heterotrimeric G protein subunit [Nicotiana plumbaginifolia];; (*SWP) sp|P93564|GPA1_SOLTU (e_value=0.0) Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum tuberosum GN=GPA1 PE=2 SV=1;; (*TAIR) AT2G26300.1 (e_value=0.0) | Symbols: GPA1, GP ALPHA 1, ATGPA1 | G protein alpha subunit 1 | chr2:11198087-11200822 FORWARD LENGTH=383;; (*ITAG) Solyc08g061220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45409864-45419016 transcript_region:SL2.40ch08:45409864..45419016- go_terms:GO:0003924 functional_description:"G protein alpha subunit 3 (AHRD V1 ***- Q8VZX1_SOLTU); contains Interpro domain(s) IPR002976 Plant G-protein, alpha subunit "; GO:0003924 NbS00049315g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|312; (*GB) gi|297746356|emb|CBI16412.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|P25341|KIN82_YEAST (e_value=6e-55) Serine/threonine-protein kinase KIN82 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KIN82 PE=1 SV=3;; (*TAIR) AT3G20830.1 (e_value=6e-64) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr3:7285024-7286250 REVERSE LENGTH=408;; (*ITAG) Solyc11g061720.1.1 (e_value=5e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45340295-45341503 transcript_region:SL2.40ch11:45340295..45341503- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KZX1_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001142g0001.1 protein AED:0.27 eAED:0.27 QI:170|0.75|0.88|0.88|0.5|0.55|9|158|278; (*GB) gi|147820884|emb|CAN60895.1| (e_value=5e-126) hypothetical protein VITISV_023239 [Vitis vinifera];; (*SWP) sp|A7SGU6|PSMG2_NEMVE (e_value=3e-24) Proteasome assembly chaperone 2 OS=Nematostella vectensis GN=psmg2 PE=3 SV=1;; (*TAIR) AT3G18940.1 (e_value=3e-119) | Symbols: | clast3-related | chr3:6527081-6529050 REVERSE LENGTH=281;; (*ITAG) Solyc01g109130.2.1 (e_value=2e-173) genomic_reference:SL2.40ch01 gene_region:87935341-87941166 transcript_region:SL2.40ch01:87935341..87941166+ go_terms:GO:0005515 functional_description:"Proteasome assembly chaperone 2 (AHRD V1 ***- C1BZ15_ESOLU); contains Interpro domain(s) IPR016562 20S proteasome assembly chaperone 2, subgroup "; GO:0005515 NbS00001020g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.25|0.2|0.8|1|1|5|0|290; (*GB) gi|224103739|ref|XP_002313175.1| (e_value=6e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XHI9|BH084_ARATH (e_value=1e-35) Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1;; (*TAIR) AT2G14760.3 (e_value=2e-37) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=341;; (*ITAG) Solyc10g049720.1.1 (e_value=8e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41978110-41979903 transcript_region:SL2.40ch10:41978110..41979903+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00001020g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|0.8|1|1|5|0|309; (*GB) gi|224103739|ref|XP_002313175.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XHI9|BH084_ARATH (e_value=2e-45) Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1;; (*TAIR) AT2G14760.1 (e_value=1e-46) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328;; (*ITAG) Solyc10g049720.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41978110-41979903 transcript_region:SL2.40ch10:41978110..41979903+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00001020g0016.1 protein AED:0.08 eAED:0.08 QI:148|0.9|0.90|1|0.6|0.63|11|358|378; (*GB) gi|356536107|ref|XP_003536581.1| (e_value=2e-173) PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9XJ35|CLPR1_ARATH (e_value=2e-162) ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1;; (*TAIR) AT1G49970.1 (e_value=1e-163) | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic subunit 1 | chr1:18501936-18504462 REVERSE LENGTH=387;; (*ITAG) Solyc10g049710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41900268-41905411 transcript_region:SL2.40ch10:41900268..41905411+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- B9HMY7_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00019207g0001.1 protein AED:0.59 eAED:0.59 QI:0|0.33|0.5|0.5|1|1|4|0|70; (*ITAG) Solyc01g008460.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:2542272-2547308 transcript_region:SL2.40ch01:2542272..2547308- go_terms:GO:0009055 functional_description:"2Fe-2S ferredoxin (AHRD V1 **-- B6U5I8_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00040039g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|255585779|ref|XP_002533569.1| (e_value=2e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092100.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47886009-47886380 transcript_region:SL2.40ch02:47886009..47886380- go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1)"; GO:0016021 NbS00056642g0002.1 protein AED:0.06 eAED:0.06 QI:508|0|0.5|1|0|0.5|2|0|376; (*GB) gi|255568100|ref|XP_002525026.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q9M088|E135_ARATH (e_value=2e-122) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT4G17180.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:9646541-9648045 FORWARD LENGTH=475;; (*ITAG) Solyc04g015190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5371233-5375212 transcript_region:SL2.40ch04:5371233..5375212- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00007491g0002.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|255555841|ref|XP_002518956.1| (e_value=5e-38) hypothetical protein RCOM_1314900 [Ricinus communis];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=3e-16) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=2e-17) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc03g119800.1.1 (e_value=1e-142) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62423804-62424826 transcript_region:SL2.40ch03:62423804..62424826- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 3 (AHRD V1 *-*- B6TFS2_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007491g0014.1 protein AED:0.16 eAED:0.17 QI:176|0.73|0.37|0.91|0.86|0.91|24|0|1476; (*GB) gi|225455842|ref|XP_002273382.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q32PW3|TAF2_DANRE (e_value=8e-81) Transcription initiation factor TFIID subunit 2 OS=Danio rerio GN=taf2 PE=2 SV=2;; (*TAIR) AT1G73960.1 (e_value=0.0) | Symbols: TAF2 | TBP-associated factor 2 | chr1:27805173-27814433 REVERSE LENGTH=1390;; (*ITAG) Solyc03g119780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62396383-62411459 transcript_region:SL2.40ch03:62396383..62411459- go_terms:GO:0008270 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 *--- C7G081_DICDI); contains Interpro domain(s) IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal "; GO:0008270 NbS00007491g0015.1 protein AED:0.26 eAED:0.26 QI:250|1|1|1|0.7|0.63|11|835|470; (*GB) gi|359484994|ref|XP_003633196.1| (e_value=0.0) PREDICTED: general transcription factor IIE subunit 1-like [Vitis vinifera];; (*SWP) sp|Q557M8|T2EA_DICDI (e_value=4e-15) General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1;; (*TAIR) AT1G03280.1 (e_value=8e-171) | Symbols: | Transcription factor TFIIE, alpha subunit | chr1:803635-806758 FORWARD LENGTH=479;; (*ITAG) Solyc03g119790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62415402-62423234 transcript_region:SL2.40ch03:62415402..62423234+ go_terms:GO:0006367 functional_description:"Transcription initiation factor IIE alpha subunit family protein (AHRD V1 ***- D7KCD4_ARALY); contains Interpro domain(s) IPR002853 Transcription factor TFIIE, alpha subunit "; GO:0006367 NbS00024388g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|225443584|ref|XP_002278515.1| (e_value=4e-32) PREDICTED: glutaredoxin-C9-like [Vitis vinifera];; (*SWP) sp|Q9SGP6|GRXC9_ARATH (e_value=4e-30) Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1;; (*TAIR) AT1G28480.1 (e_value=3e-31) | Symbols: GRX480, roxy19 | Thioredoxin superfamily protein | chr1:10013634-10014047 REVERSE LENGTH=137;; (*ITAG) Solyc10g008930.1.1 (e_value=3e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2950728-2951111 transcript_region:SL2.40ch10:2950728..2951111+ go_terms:GO:0005515 functional_description:"Glutaredoxin (AHRD V1 ***- B9H2P7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0005515 NbS00024388g0005.1 protein AED:0.28 eAED:0.49 QI:0|0|0|1|0|0|3|0|85; (*ITAG) Solyc04g071390.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00017151g0106.1 protein AED:0.12 eAED:0.12 QI:356|1|1|1|1|1|4|462|184 NbS00017151g0107.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|388|356 NbS00040445g0002.1 protein AED:0.19 eAED:0.21 QI:50|0.62|0.55|0.88|1|1|9|594|514; (*GB) gi|359476208|ref|XP_002263074.2| (e_value=0.0) PREDICTED: uncharacterized protein sll0005-like [Vitis vinifera];; (*SWP) sp|Q55680|Y005_SYNY3 (e_value=3e-68) Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1;; (*TAIR) AT5G24970.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:8604358-8608663 REVERSE LENGTH=719;; (*ITAG) Solyc08g068920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55197139-55214508 transcript_region:SL2.40ch08:55197139..55214508- functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00019688g0006.1 protein AED:0.18 eAED:0.18 QI:492|1|1|1|0.28|0.37|8|243|419; (*GB) gi|334351805|dbj|BAK32933.1| (e_value=0.0) mid1-complementing activity 2 [Nicotiana tabacum];; (*SWP) sp|Q8L7E9|MCAC1_ARATH (e_value=0.0) Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=2 SV=1;; (*TAIR) AT4G35920.2 (e_value=0.0) | Symbols: MCA1 | PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421;; (*ITAG) Solyc02g083540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41475623-41481382 transcript_region:SL2.40ch02:41475623..41481382- functional_description:"Protein kinase domain containing protein (AHRD V1 *--- Q2R001_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00019688g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.14|0.12|0.62|0|0.25|8|0|346; (*GB) gi|224058595|ref|XP_002299557.1| (e_value=2e-101) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=1e-95) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.1 (e_value=2e-96) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=472;; (*ITAG) Solyc08g080430.1.1 (e_value=1e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60891782-60894197 transcript_region:SL2.40ch08:60891782..60894197+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00029209g0001.1 protein AED:0.09 eAED:0.10 QI:0|1|0|1|1|1|2|0|507; (*GB) gi|297742531|emb|CBI34680.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=5e-104) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G63450.1 (e_value=0.0) | Symbols: RHS8 | root hair specific 8 | chr1:23532523-23534517 FORWARD LENGTH=664;; (*ITAG) Solyc12g056260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47571842-47573794 transcript_region:SL2.40ch12:47571842..47573794- go_terms:GO:0016020 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00021954g0003.1 protein AED:0.02 eAED:0.02 QI:156|0.83|0.85|1|0.66|0.71|7|167|400; (*GB) gi|147835801|emb|CAN61992.1| (e_value=8e-97) hypothetical protein VITISV_030445 [Vitis vinifera];; (*SWP) sp|Q9SFZ3|BH110_ARATH (e_value=2e-50) Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2;; (*TAIR) AT1G27660.1 (e_value=2e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9621701-9625666 FORWARD LENGTH=453;; (*ITAG) Solyc04g080710.2.1 (e_value=4e-131) genomic_reference:SL2.40ch04 gene_region:62391119-62395685 transcript_region:SL2.40ch04:62391119..62395685- go_terms:GO:0005634 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634 NbC26012202g0003.1 protein AED:0.04 eAED:0.04 QI:400|1|1|1|0.66|0.5|4|158|366; (*GB) gi|356538611|ref|XP_003537795.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100796529 [Glycine max];; (*ITAG) Solyc04g009160.2.1 (e_value=3e-178) genomic_reference:SL2.40ch04 gene_region:2660331-2668727 transcript_region:SL2.40ch04:2660331..2668727- functional_description:"Unknown Protein (AHRD V1)"; NbS00041041g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.85|0.75|8|255|503; (*GB) gi|374250709|gb|AEY99977.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q39016|CDPKB_ARATH (e_value=0.0) Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2;; (*TAIR) AT1G35670.1 (e_value=0.0) | Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 | calcium-dependent protein kinase 2 | chr1:13205456-13208058 FORWARD LENGTH=495;; (*ITAG) Solyc06g065380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37191712-37195833 transcript_region:SL2.40ch06:37191712..37195833+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 **** D7LXA9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00041041g0006.1 protein AED:0.46 eAED:0.58 QI:0|0|0|1|1|0.66|3|0|101; (*GB) gi|676884|dbj|BAA06151.1| (e_value=2e-33) pit2 [Nicotiana tabacum];; (*TAIR) AT1G71950.1 (e_value=6e-24) | Symbols: | Proteinase inhibitor, propeptide | chr1:27080453-27081573 REVERSE LENGTH=136;; (*ITAG) Solyc06g065370.2.1 (e_value=6e-34) genomic_reference:SL2.40ch06 gene_region:37187770-37191057 transcript_region:SL2.40ch06:37187770..37191057+ go_terms:GO:0043086 functional_description:"Subtilase family protein (AHRD V1 **-- D7KTL9_ARALY); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0043086 NbS00002945g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|297830086|ref|XP_002882925.1| (e_value=1e-50) hypothetical protein ARALYDRAFT_897805 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G53130.1 (e_value=4e-53) | Symbols: GRI | Stigma-specific Stig1 family protein | chr1:19794947-19795453 REVERSE LENGTH=168;; (*ITAG) Solyc07g063090.1.1 (e_value=2e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62891384-62891824 transcript_region:SL2.40ch07:62891384..62891824+ functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00002945g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.57|0.37|1|1|1|8|0|676; (*GB) gi|292806707|gb|ADE42483.1| (e_value=0.0) proton pump interactor 1 [Solanum tuberosum];; (*TAIR) AT4G27500.1 (e_value=2e-128) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc07g063100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62894231-62898079 transcript_region:SL2.40ch07:62894231..62898079- functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00041976g0004.1 protein AED:0.20 eAED:0.20 QI:73|1|0.75|1|1|1|8|276|374; (*GB) gi|255555887|ref|XP_002518979.1| (e_value=5e-153) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT2G35500.1 (e_value=2e-146) | Symbols: SKL2 | shikimate kinase like 2 | chr2:14914038-14915909 FORWARD LENGTH=387;; (*ITAG) Solyc08g076410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57590045-57594371 transcript_region:SL2.40ch08:57590045..57594371+ functional_description:"Shikimate kinase-like protein (AHRD V1 **-- B9GZJ5_POPTR); contains Interpro domain(s) IPR017447 CS "; NbS00023615g0002.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|358635024|dbj|BAL22345.1| (e_value=3e-86) oxidoreductase [Ipomoea batatas];; (*SWP) sp|Q96323|LDOX_ARATH (e_value=1e-17) Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1;; (*TAIR) AT3G13610.1 (e_value=4e-62) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc01g044550.1.1 (e_value=9e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:39693876-39694433 transcript_region:SL2.40ch01:39693876..39694433+ functional_description:"Anthocyanidin synthase (AHRD V1 **-- O22583_MATIN)"; NbS00023615g0016.1 protein AED:0.35 eAED:0.36 QI:0|0.46|0.35|1|0.61|0.57|14|360|616; (*GB) gi|297746452|emb|CBI16508.3| (e_value=8e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84P17|AEE18_ARATH (e_value=7e-74) Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1;; (*TAIR) AT1G55320.1 (e_value=5e-75) | Symbols: AAE18 | acyl-activating enzyme 18 | chr1:20633371-20636659 FORWARD LENGTH=727;; (*ITAG) Solyc12g038400.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35197846-35215974 transcript_region:SL2.40ch12:35197846..35215974+ go_terms:GO:0016874 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016874 NbS00023615g0015.1 protein AED:0.09 eAED:0.09 QI:126|0.5|0.33|1|1|1|3|0|513; (*GB) gi|10798748|dbj|BAB16426.1| (e_value=0.0) EIG-I24 [Nicotiana tabacum];; (*SWP) sp|Q8S9G6|T5AT_TAXWC (e_value=2e-39) Taxadien-5-alpha-ol O-acetyltransferase OS=Taxus wallichiana var. chinensis PE=2 SV=1;; (*TAIR) AT1G28680.1 (e_value=8e-128) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:10078222-10079763 FORWARD LENGTH=451;; (*ITAG) Solyc04g079720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61682404-61684269 transcript_region:SL2.40ch04:61682404..61684269- go_terms:GO:0016747,GO:0055114 functional_description:"Transferase family protein (AHRD V1 **-- D7KCY6_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747,GO:0055114 NbS00023615g0017.1 protein AED:0.37 eAED:0.44 QI:83|0.75|0.6|1|0.5|0.4|5|0|119; (*GB) gi|225427328|ref|XP_002282266.1| (e_value=1e-50) PREDICTED: vesicle transport protein GOT1A [Vitis vinifera];; (*SWP) sp|Q9DCQ3|GOT1A_MOUSE (e_value=3e-17) Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1;; (*TAIR) AT5G01430.2 (e_value=4e-50) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:176797-178010 REVERSE LENGTH=140;; (*ITAG) Solyc02g069610.2.1 (e_value=7e-54) genomic_reference:SL2.40ch02 gene_region:34031707-34035220 transcript_region:SL2.40ch02:34031707..34035220+ go_terms:GO:0005515,GO:0004871 functional_description:"Protein transport protein GOT1 (AHRD V1 **-- GOT1_YEAST); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515,GO:0004871 NbS00017265g0001.1 protein AED:0.07 eAED:0.08 QI:67|1|0.5|1|0|0|2|0|423; (*GB) gi|225460674|ref|XP_002266272.1| (e_value=4e-174) PREDICTED: uncharacterized protein LOC100259010 [Vitis vinifera];; (*TAIR) AT1G21200.1 (e_value=5e-144) | Symbols: | sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443;; (*ITAG) Solyc12g100040.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65281062-65282444 transcript_region:SL2.40ch12:65281062..65282444- functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00005164g0007.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|1|1|4|0|241; (*GB) gi|357513113|ref|XP_003626845.1| (e_value=9e-38) NBS resistance protein [Medicago truncatula];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=7e-34) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=1e-28) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g075630.2.1 (e_value=2e-33) genomic_reference:SL2.40ch08 gene_region:56932274-56935571 transcript_region:SL2.40ch08:56932274..56935571+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00005164g0012.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0|0|2|0|589; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=1e-46) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=1e-46) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g088060.2.1 (e_value=9e-54) genomic_reference:SL2.40ch01 gene_region:74665132-74670971 transcript_region:SL2.40ch01:74665132..74670971- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00005164g0011.1 protein AED:0.44 eAED:0.62 QI:0|0|0|1|0|0|2|0|191; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=1e-40) hypothetical protein [Nicotiana tabacum]; NbS00008571g0013.1 protein AED:0.09 eAED:0.18 QI:0|0.5|0|1|0|0.33|3|0|296; (*GB) gi|356540902|ref|XP_003538923.1| (e_value=5e-116) PREDICTED: jmjC domain-containing protein 7-like [Glycine max];; (*SWP) sp|P0C870|JMJD7_HUMAN (e_value=8e-43) JmjC domain-containing protein 7 OS=Homo sapiens GN=JMJD7 PE=2 SV=1;; (*TAIR) AT3G45880.1 (e_value=1e-106) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:16869855-16871544 REVERSE LENGTH=345;; (*ITAG) Solyc08g075510.2.1 (e_value=3e-149) genomic_reference:SL2.40ch08 gene_region:56827447-56831008 transcript_region:SL2.40ch08:56827447..56831008- functional_description:"JmjC domain protein (AHRD V1 **-- Q1D441_MYXXD); contains Interpro domain(s) IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase "; NbS00008571g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|270; (*GB) gi|357484339|ref|XP_003612457.1| (e_value=2e-54) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q9C6R9|PPR66_ARATH (e_value=2e-45) Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1;; (*TAIR) AT1G31790.1 (e_value=1e-46) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11394744-11395973 REVERSE LENGTH=409;; (*ITAG) Solyc08g075500.2.1 (e_value=1e-126) genomic_reference:SL2.40ch08 gene_region:56823699-56825538 transcript_region:SL2.40ch08:56823699..56825538- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004115g0010.1 protein AED:0.03 eAED:0.03 QI:277|0.8|0.66|1|1|1|6|321|593; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=4e-139) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=2e-30) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.2 (e_value=2e-120) | Symbols: | Protein kinase superfamily protein | chr1:29966821-29971090 REVERSE LENGTH=680;; (*ITAG) Solyc03g117790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004115g0012.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|137; (*GB) gi|84371946|gb|ABC56264.1| (e_value=3e-62) NADH-plastoquinone oxidoreductase subunit 4 [Solanum bulbocastanum];; (*SWP) sp|Q8S8U7|NU4C_ATRBE (e_value=1e-63) NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Atropa belladonna GN=ndhD PE=3 SV=1;; (*ITAG) ATCG01050.1 (e_value=7e-54) | Symbols: NDHD | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:115665-117185 REVERSE LENGTH=506;; (*ITAG) Solyc01g065600.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:64355157-64358017 transcript_region:SL2.40ch01:64355157..64358017+ go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase chain 4, chloroplastic (AHRD V1 ***- NU4C_SOLLC); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00003535g0010.1 protein AED:0.07 eAED:0.07 QI:193|0.88|0.8|1|0.66|0.5|10|0|482; (*GB) gi|255547548|ref|XP_002514831.1| (e_value=0.0) Aspartic proteinase Asp1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-153) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=1e-170) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc05g055800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64441581-64448715 transcript_region:SL2.40ch05:64441581..64448715- go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7KF83_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00003535g0014.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.66|3|0|443; (*GB) gi|255579659|ref|XP_002530669.1| (e_value=0.0) RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q93ZD7|MRS24_ARATH (e_value=8e-166) Magnesium transporter MRS2-4 OS=Arabidopsis thaliana GN=MRS2-4 PE=1 SV=1;; (*TAIR) AT3G58970.1 (e_value=6e-167) | Symbols: MGT6, MRS2-4 | magnesium transporter 6 | chr3:21789659-21791163 REVERSE LENGTH=436;; (*ITAG) Solyc01g103890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84151906-84158425 transcript_region:SL2.40ch01:84151906..84158425- go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-4 (AHRD V1 **** MRS24_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00003535g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.4|1|1|1|5|0|403; (*GB) gi|224144954|ref|XP_002325473.1| (e_value=5e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=5e-97) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=3e-98) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc05g055790.2.1 (e_value=6e-140) genomic_reference:SL2.40ch05 gene_region:64438039-64441321 transcript_region:SL2.40ch05:64438039..64441321+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- Q4L0F8_MEDSA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00039292g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|158; (*GB) gi|224066951|ref|XP_002302295.1| (e_value=5e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LFJ5|T112A_ARATH (e_value=2e-36) TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1;; (*TAIR) AT1G22270.1 (e_value=2e-37) | Symbols: | Trm112p-like protein | chr1:7865548-7865922 FORWARD LENGTH=124;; (*ITAG) Solyc04g074150.1.1 (e_value=2e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57741096-57741443 transcript_region:SL2.40ch04:57741096..57741443- go_terms:GO:0008276 functional_description:"Methyltransferase-associated protein (AHRD V1 **** C1FDA9_9CHLO); contains Interpro domain(s) IPR005651 Protein of unknown function DUF343 "; GO:0008276 NbS00039292g0007.1 protein AED:0.18 eAED:0.18 QI:159|1|1|1|1|1|4|235|436; (*GB) gi|255545716|ref|XP_002513918.1| (e_value=6e-169) Protein brittle-1, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=5e-36) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT5G64970.1 (e_value=2e-152) | Symbols: | Mitochondrial substrate carrier family protein | chr5:25958806-25960443 REVERSE LENGTH=428;; (*ITAG) Solyc04g074130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57726028-57733813 transcript_region:SL2.40ch04:57726028..57733813+ go_terms:GO:0030233 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10QM8_ORYSJ); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00039292g0008.1 protein AED:0.30 eAED:0.42 QI:345|1|0.71|1|0.83|0.85|7|0|387; (*GB) gi|302141957|emb|CBI19160.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G34630.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr1:12685317-12687435 FORWARD LENGTH=481;; (*ITAG) Solyc04g074140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57734849-57740521 transcript_region:SL2.40ch04:57734849..57740521+ functional_description:"Os03g0190900 protein (Fragment) (AHRD V1 *--- Q0DUE5_ORYSJ)"; NbS00046093g0004.1 protein AED:0.11 eAED:0.18 QI:284|0|0.5|1|1|1|2|317|20 NbS00046093g0003.1 protein AED:0.42 eAED:0.68 QI:0|0.5|0|0.66|1|0.66|3|0|90; (*GB) gi|224125048|ref|XP_002329878.1| (e_value=6e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT1G16270.2 (e_value=7e-26) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:5563890-5568145 FORWARD LENGTH=1147;; (*ITAG) Solyc09g091460.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00059105g0003.1 protein AED:0.03 eAED:0.03 QI:149|1|1|1|1|1|2|402|221; (*GB) gi|416652|sp|Q03666.1|GSTX4_TOBAC (e_value=3e-151) RecName: Full=Probable glutathione S-transferase; AltName: Full=Auxin-induced protein PCNT107;; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=7e-153) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=1e-114) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc07g056480.2.1 (e_value=3e-136) genomic_reference:SL2.40ch07 gene_region:61623166-61624189 transcript_region:SL2.40ch07:61623166..61624189+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** Q8GVD1_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00030322g0001.1 protein AED:0.08 eAED:0.08 QI:238|1|1|1|0.33|0.42|7|769|105; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00036929g0005.1 protein AED:0.01 eAED:0.01 QI:142|1|1|1|1|1|2|132|547; (*GB) gi|255554971|ref|XP_002518523.1| (e_value=0.0) Pectinesterase precursor, putative [Ricinus communis];; (*SWP) sp|Q1JPL7|PME18_ARATH (e_value=0.0) Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3;; (*TAIR) AT1G11580.1 (e_value=0.0) | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557;; (*ITAG) Solyc02g080210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39065278-39076087 transcript_region:SL2.40ch02:39065278..39076087- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RXQ4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00036929g0006.1 protein AED:0.13 eAED:0.14 QI:0|0.75|0.4|1|0.5|0.6|5|0|216; (*GB) gi|225444367|ref|XP_002266933.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100258839 [Vitis vinifera];; (*TAIR) AT4G04900.1 (e_value=1e-20) | Symbols: RIC10 | ROP-interactive CRIB motif-containing protein 10 | chr4:2486218-2487779 REVERSE LENGTH=156;; (*ITAG) Solyc02g080230.2.1 (e_value=7e-98) genomic_reference:SL2.40ch02 gene_region:39084532-39087315 transcript_region:SL2.40ch02:39084532..39087315+ functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00061181g0004.1 protein AED:0.28 eAED:0.28 QI:338|0.87|0.77|1|0.87|0.88|9|0|469; (*GB) gi|45387407|gb|AAS60194.1| (e_value=0.0) hexokinase 3 [Nicotiana tabacum];; (*SWP) sp|Q9SQ76|HXK2_SOLTU (e_value=0.0) Hexokinase-2 OS=Solanum tuberosum GN=HXK2 PE=2 SV=1;; (*TAIR) AT2G19860.1 (e_value=0.0) | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570818-8573762 FORWARD LENGTH=502;; (*ITAG) Solyc06g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38097051-38101667 transcript_region:SL2.40ch06:38097051..38101667- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FR27_SOLLC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbS00019212g0004.1 protein AED:0.01 eAED:0.01 QI:230|1|1|1|1|1|2|619|456; (*GB) gi|225434168|ref|XP_002275170.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 74F2 [Vitis vinifera];; (*SWP) sp|O22822|U74F2_ARATH (e_value=0.0) UDP-glycosyltransferase 74F2 OS=Arabidopsis thaliana GN=UGT74F2 PE=1 SV=1;; (*TAIR) AT2G43820.1 (e_value=0.0) | Symbols: GT, UGT74F2, ATSAGT1, SGT1, SAGT1 | UDP-glucosyltransferase 74F2 | chr2:18152279-18153715 FORWARD LENGTH=449;; (*ITAG) Solyc08g062220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47973355-47975962 transcript_region:SL2.40ch08:47973355..47975962- go_terms:GO:0080002 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 **** B6EWX8_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00019212g0108.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.33|1|0.8|0.83|6|0|343 NbS00019212g0107.1 protein AED:0.35 eAED:0.36 QI:34|0.81|0.91|1|0.18|0.33|12|435|332 NbS00027884g0003.1 protein AED:0.14 eAED:0.14 QI:302|1|1|1|1|1|4|292|501; (*GB) gi|225458335|ref|XP_002281605.1| (e_value=2e-167) PREDICTED: uncharacterized protein LOC100260826 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=3e-110) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G03840.1 (e_value=2e-111) | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506;; (*ITAG) Solyc04g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61978191-61981285 transcript_region:SL2.40ch04:61978191..61981285- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00034565g0001.1 protein AED:0.10 eAED:0.10 QI:8|0.83|0.71|1|1|1|7|121|359; (*GB) gi|350535657|ref|NP_001234206.1| (e_value=0.0) fructokinase [Solanum lycopersicum];; (*SWP) sp|P37829|SCRK_SOLTU (e_value=9e-129) Fructokinase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G51830.1 (e_value=2e-149) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:21069709-21071450 FORWARD LENGTH=343;; (*ITAG) Solyc10g017620.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5496344-5499545 transcript_region:SL2.40ch10:5496344..5499545+ go_terms:GO:0006014 functional_description:"5-dehydro-2-deoxygluconokinase 1 (AHRD V1 **-- IOLC1_BACCZ); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0006014 NbS00004734g0013.1 protein AED:0.30 eAED:0.32 QI:0|0.83|0.57|1|0.83|0.71|7|0|379; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=0.0) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|P29620|CDKD1_ORYSJ (e_value=0.0) Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1;; (*TAIR) AT1G18040.1 (e_value=4e-176) | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent kinase D1;3 | chr1:6207128-6209299 REVERSE LENGTH=391;; (*ITAG) Solyc08g081280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004734g0015.1 protein AED:0.12 eAED:0.13 QI:0|1|0|1|0|1|2|0|658; (*GB) gi|224053877|ref|XP_002298024.1| (e_value=1e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=4e-69) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT4G11400.1 (e_value=3e-70) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr4:6938717-6940539 FORWARD LENGTH=573;; (*ITAG) Solyc08g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61515799-61521029 transcript_region:SL2.40ch08:61515799..61521029- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00004734g0011.1 protein AED:0.27 eAED:0.27 QI:235|0.5|0.4|1|0.5|0.6|5|304|178; (*GB) gi|356560787|ref|XP_003548669.1| (e_value=8e-89) PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max];; (*SWP) sp|P42749|UBC5_ARATH (e_value=8e-83) Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2;; (*TAIR) AT1G63800.1 (e_value=6e-84) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc08g081270.2.1 (e_value=5e-94) genomic_reference:SL2.40ch08 gene_region:61492227-61498375 transcript_region:SL2.40ch08:61492227..61498375- go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0016567,GO:0043687 NbS00062077g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|61|138; (*GB) gi|16580134|gb|AAK92215.1| (e_value=5e-83) bZIP transcription factor BZI-4 [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=4e-24) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G62420.1 (e_value=2e-34) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc01g100460.2.1 (e_value=2e-77) genomic_reference:SL2.40ch01 gene_region:82243649-82244921 transcript_region:SL2.40ch01:82243649..82244921+ go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **** C0LQL1_9CARY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00019412g0006.1 protein AED:0.25 eAED:0.25 QI:278|1|1|1|1|1|15|97|415; (*GB) gi|224135729|ref|XP_002322146.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q86HG0|GMPPA_DICDI (e_value=4e-117) Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1;; (*TAIR) AT1G74910.2 (e_value=0.0) | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28135770-28138456 REVERSE LENGTH=415;; (*ITAG) Solyc03g113790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57888358-57893883 transcript_region:SL2.40ch03:57888358..57893883- go_terms:GO:0051015 functional_description:"Mannose-1-phosphate guanyltransferase (AHRD V1 ***- B6TBA0_MAIZE); contains Interpro domain(s) IPR005835 Nucleotidyl transferase "; GO:0051015 NbS00019412g0007.1 protein AED:0.24 eAED:0.27 QI:187|0.86|0.75|1|1|1|16|0|506; (*GB) gi|375155305|gb|AFA37976.1| (e_value=0.0) betaine aldehyde dehydrogenase [Solanum torvum];; (*SWP) sp|P17202|BADH_SPIOL (e_value=0.0) Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT1G74920.1 (e_value=0.0) | Symbols: ALDH10A8 | aldehyde dehydrogenase 10A8 | chr1:28139175-28142573 REVERSE LENGTH=501;; (*ITAG) Solyc03g113800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57894787-57902443 transcript_region:SL2.40ch03:57894787..57902443- go_terms:GO:0004029 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00020422g0006.1 protein AED:0.06 eAED:0.06 QI:884|1|1|1|0.8|0.66|6|231|292; (*GB) gi|225431291|ref|XP_002268828.1| (e_value=8e-86) PREDICTED: uncharacterized protein LOC100260906 [Vitis vinifera];; (*TAIR) AT3G26750.1 (e_value=1e-46) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE LENGTH=526;; (*ITAG) Solyc03g033720.2.1 (e_value=2e-157) genomic_reference:SL2.40ch03 gene_region:9601084-9606368 transcript_region:SL2.40ch03:9601084..9606368- functional_description:"Genomic DNA chromosome 3 P1 clone MDJ14 (AHRD V1 ***- Q9LW36_ARATH)"; NbS00032309g0009.1 protein AED:0.21 eAED:0.21 QI:77|1|1|1|1|1|15|613|860; (*GB) gi|224068448|ref|XP_002326123.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDE2|TTL12_MOUSE (e_value=9e-92) Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1;; (*TAIR) AT1G77550.1 (e_value=0.0) | Symbols: | tubulin-tyrosine ligases;tubulin-tyrosine ligases | chr1:29138490-29142965 REVERSE LENGTH=855;; (*ITAG) Solyc07g041870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51737846-51744068 transcript_region:SL2.40ch07:51737846..51744068+ go_terms:GO:0006464 functional_description:"Tubulin--tyrosine ligase-like protein 12 (AHRD V1 ***- B6U4S2_MAIZE); contains Interpro domain(s) IPR004344 Tubulin-tyrosine ligase "; GO:0006464 NbS00032309g0011.1 protein AED:0.11 eAED:0.11 QI:76|1|1|1|0.83|0.85|7|401|360; (*GB) gi|71482942|gb|AAZ32410.1| (e_value=0.0) cysteine proteinase aleuran type [Nicotiana benthamiana];; (*SWP) sp|Q40143|CYSP3_SOLLC (e_value=0.0) Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1;; (*TAIR) AT5G60360.1 (e_value=0.0) | Symbols: SAG2, AALP, ALP | aleurain-like protease | chr5:24280044-24282152 FORWARD LENGTH=358;; (*ITAG) Solyc07g041900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51828739-51831068 transcript_region:SL2.40ch07:51828739..51831068- go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin L-like cysteine proteinase (AHRD V1 **** A7LJ78_DERVA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0030984,GO:0004197 NbS00032309g0010.1 protein AED:0.33 eAED:0.33 QI:557|0.90|0.83|1|0.36|0.41|12|0|260; (*GB) gi|297738563|emb|CBI27808.3| (e_value=3e-67) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G06005.1 (e_value=1e-63) | Symbols: FIP1 | FRIGIDA interacting protein 1 | chr2:2332583-2336022 FORWARD LENGTH=355;; (*ITAG) Solyc12g009100.1.1 (e_value=9e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2419442-2430753 transcript_region:SL2.40ch12:2419442..2430753- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00053401g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0|1|0|0.2|5|0|414; (*GB) gi|147792200|emb|CAN62034.1| (e_value=8e-100) hypothetical protein VITISV_014731 [Vitis vinifera];; (*SWP) sp|F4K1B1|RPAP2_ARATH (e_value=1e-59) Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1;; (*TAIR) AT5G26760.2 (e_value=1e-60) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:9403869-9407170 REVERSE LENGTH=735;; (*ITAG) Solyc01g101010.2.1 (e_value=9e-171) genomic_reference:SL2.40ch01 gene_region:82636054-82642167 transcript_region:SL2.40ch01:82636054..82642167- functional_description:"AGAP008431-PA (Fragment) (AHRD V1 *-*- A7UUL5_ANOGA); contains Interpro domain(s) IPR007308 Protein of unknown function DUF408 "; NbS00053401g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.8|0.33|1|0.6|0.83|6|0|361; (*GB) gi|147792200|emb|CAN62034.1| (e_value=8e-115) hypothetical protein VITISV_014731 [Vitis vinifera];; (*SWP) sp|F4K1B1|RPAP2_ARATH (e_value=1e-70) Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1;; (*TAIR) AT5G26760.2 (e_value=9e-72) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:9403869-9407170 REVERSE LENGTH=735;; (*ITAG) Solyc01g101010.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:82636054-82642167 transcript_region:SL2.40ch01:82636054..82642167- functional_description:"AGAP008431-PA (Fragment) (AHRD V1 *-*- A7UUL5_ANOGA); contains Interpro domain(s) IPR007308 Protein of unknown function DUF408 "; NbS00008767g0002.1 protein AED:0.00 eAED:0.00 QI:66|-1|0|1|-1|1|1|0|289; (*GB) gi|224062922|ref|XP_002300933.1| (e_value=7e-48) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SVC5|DOF35_ARATH (e_value=8e-35) Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1;; (*TAIR) AT3G52440.1 (e_value=6e-36) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr3:19435447-19436190 FORWARD LENGTH=247;; (*ITAG) Solyc04g070960.1.1 (e_value=3e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55346932-55347735 transcript_region:SL2.40ch04:55346932..55347735- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 9 (AHRD V1 *-*- A5HWF8_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00010859g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|55294658|emb|CAH69226.1| (e_value=2e-27) putative endochitinase B [Nicotiana glauca];; (*SWP) sp|P29059|CHI3_TOBAC (e_value=1e-26) Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1;; (*TAIR) AT3G12500.1 (e_value=5e-23) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g074390.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57056925-57057629 transcript_region:SL2.40ch10:57056925..57057629- go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 *-** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00021194g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|0|2|0|208; (*GB) gi|53793731|gb|AAU93594.1| (e_value=4e-117) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=9e-113) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=7e-114) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=7e-120) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00021194g0006.1 protein AED:0.27 eAED:0.27 QI:609|1|0.5|1|1|0.5|2|0|131; (*GB) gi|37784188|gb|AAP44415.1| (e_value=8e-83) 40S ribosomal protein S9 [Lactuca sativa];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=1e-77) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=9e-79) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=3e-83) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00058816g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|401181|sp|P32026.1|DEF_TOBAC (e_value=3e-36) RecName: Full=Defensin-like protein; AltName: Full=Flower-specific gamma-thionin; Flags: Precursor;; (*SWP) sp|P32026|DEF_TOBAC (e_value=9e-38) Defensin-like protein OS=Nicotiana tabacum GN=FST PE=1 SV=1;; (*ITAG) Solyc07g006380.2.1 (e_value=2e-19) genomic_reference:SL2.40ch07 gene_region:1207489-1208297 transcript_region:SL2.40ch07:1207489..1208297+ go_terms:GO:0006952 functional_description:"Defensin-like protein (AHRD V1 ***- Q948T3_PYRPY); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0006952 NbC26248078g0002.1 protein AED:0.01 eAED:0.01 QI:67|1|1|1|1|1|2|285|84; (*ITAG) Solyc06g061230.2.1 (e_value=5e-38) genomic_reference:SL2.40ch06 gene_region:35620304-35620987 transcript_region:SL2.40ch06:35620304..35620987+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009632 Putative metallocarboxypeptidase inhibitor "; NbS00030353g0015.1 protein AED:0.18 eAED:0.18 QI:188|0.75|0.8|1|0.25|0|5|248|522; (*GB) gi|225440197|ref|XP_002283542.1| (e_value=6e-113) PREDICTED: uncharacterized protein LOC100248215 [Vitis vinifera];; (*TAIR) AT3G56590.1 (e_value=6e-83) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:20965105-20967675 FORWARD LENGTH=477;; (*ITAG) Solyc10g078160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59351215-59355777 transcript_region:SL2.40ch10:59351215..59355777+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 ***- Q5JLQ2_ORYSJ)"; NbS00030353g0009.1 protein AED:0.22 eAED:0.24 QI:18|0.75|0.4|1|0.75|0.8|5|0|546; (*GB) gi|359494525|ref|XP_002268838.2| (e_value=0.0) PREDICTED: cyclin-T1-5-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FKE6|CCT15_ARATH (e_value=2e-114) Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2;; (*TAIR) AT5G45190.1 (e_value=1e-115) | Symbols: | Cyclin family protein | chr5:18277808-18280733 REVERSE LENGTH=579;; (*ITAG) Solyc10g078180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59362906-59370873 transcript_region:SL2.40ch10:59362906..59370873+ functional_description:"Cyclin family protein (AHRD V1 *-*- D7MKU7_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; NbS00030353g0012.1 protein AED:0.40 eAED:0.46 QI:451|0|0|0.75|0.33|0.25|4|0|217; (*GB) gi|359494525|ref|XP_002268838.2| (e_value=3e-33) PREDICTED: cyclin-T1-5-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q2QQS5|CCT14_ORYSJ (e_value=1e-26) Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1;; (*TAIR) AT4G19600.1 (e_value=4e-24) | Symbols: CYCT1;4 | Cyclin family protein | chr4:10673619-10676532 FORWARD LENGTH=541;; (*ITAG) Solyc10g078180.1.1 (e_value=4e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59362906-59370873 transcript_region:SL2.40ch10:59362906..59370873+ functional_description:"Cyclin family protein (AHRD V1 *-*- D7MKU7_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; NbS00030353g0010.1 protein AED:0.09 eAED:0.09 QI:154|0.66|0.75|1|0|0|4|0|590; (*GB) gi|255565354|ref|XP_002523668.1| (e_value=0.0) inositol or phosphatidylinositol kinase, putative [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=2e-129) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G40850.1 (e_value=9e-176) | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoinositide 4-kinase gamma 1 | chr2:17051575-17053260 FORWARD LENGTH=561;; (*ITAG) Solyc10g078170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59356908-59358608 transcript_region:SL2.40ch10:59356908..59358608- go_terms:GO:0016773 functional_description:"Phosphatidylinositol 3-and 4-kinase family protein (AHRD V1 ***- D7LFV2_ARALY); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0016773 NbS00019374g0009.1 protein AED:0.00 eAED:0.00 QI:195|1|1|1|1|1|3|281|518; (*GB) gi|255540519|ref|XP_002511324.1| (e_value=1e-171) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|O61967|LAP1_CAEEL (e_value=8e-35) Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3;; (*TAIR) AT5G05850.1 (e_value=2e-146) | Symbols: PIRL1 | plant intracellular ras group-related LRR 1 | chr5:1762691-1764609 REVERSE LENGTH=506;; (*ITAG) Solyc03g112270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56776658-56780829 transcript_region:SL2.40ch03:56776658..56780829- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00019374g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|359491203|ref|XP_003634240.1| (e_value=4e-16) PREDICTED: uncharacterized protein LOC100855230 [Vitis vinifera];; (*ITAG) Solyc03g112210.1.1 (e_value=2e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:56741857-56742135 transcript_region:SL2.40ch03:56741857..56742135- functional_description:"Unknown Protein (AHRD V1)"; NbS00040149g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|30687198|ref|NP_173538.2| (e_value=5e-77) Vacuolar iron transporter-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9LPU9|VITH1_ARATH (e_value=1e-78) Vacuolar iron transporter homolog 1 OS=Arabidopsis thaliana GN=At1g21140 PE=2 SV=1;; (*TAIR) AT1G21140.1 (e_value=1e-79) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr1:7404464-7405066 FORWARD LENGTH=200;; (*ITAG) Solyc01g104780.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:84908606-84909449 transcript_region:SL2.40ch01:84908606..84909449- functional_description:"Nodulin-related integral membrane protein DUF125 (AHRD V1 *-*- C7JBI4_ACEP3); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00021040g0001.1 protein AED:0.44 eAED:0.79 QI:0|0|0|1|1|1|2|0|134 NbS00003131g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|1|1|4|0|343; (*GB) gi|224134647|ref|XP_002321874.1| (e_value=4e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WUQ1|BAG1_ARATH (e_value=3e-113) BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT5G52060.1 (e_value=2e-114) | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342;; (*ITAG) Solyc03g026220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8010313-8012274 transcript_region:SL2.40ch03:8010313..8012274+ go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00003131g0011.1 protein AED:0.30 eAED:0.30 QI:58|1|0.85|1|0.83|0.85|7|0|315; (*GB) gi|225455453|ref|XP_002274647.1| (e_value=2e-109) PREDICTED: uncharacterized protein LOC100252183 [Vitis vinifera];; (*TAIR) AT5G52110.2 (e_value=2e-101) | Symbols: HCF208 | Protein of unknown function (DUF2930) | chr5:21172159-21173953 REVERSE LENGTH=275;; (*ITAG) Solyc03g026200.2.1 (e_value=5e-174) genomic_reference:SL2.40ch03 gene_region:7982237-7987700 transcript_region:SL2.40ch03:7982237..7987700+ functional_description:"Os10g0522500 protein (Fragment) (AHRD V1 *-*- Q0IWA4_ORYSJ)"; NbS00003131g0010.1 protein AED:0.27 eAED:0.31 QI:0|1|0.75|1|0.85|0.87|8|0|265; (*GB) gi|225455455|ref|XP_002274702.1| (e_value=4e-145) PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FJ82|DAPB3_ARATH (e_value=4e-135) Putative dihydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1;; (*TAIR) AT5G52100.1 (e_value=3e-136) | Symbols: crr1 | Dihydrodipicolinate reductase, bacterial/plant | chr5:21170203-21172107 FORWARD LENGTH=298;; (*ITAG) Solyc03g026210.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:7987974-7992103 transcript_region:SL2.40ch03:7987974..7992103- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Dihydrodipicolinate reductase family protein (AHRD V1 ***- D7MRM8_ARALY); contains Interpro domain(s) IPR011770 Dihydrodipicolinate reductase, bacterial and plant "; GO:0008152,GO:0005737,GO:0055114 NbS00014011g0008.1 protein AED:0.39 eAED:0.70 QI:0|0|0.33|1|1|1|3|0|119 NbS00008414g0006.1 protein AED:0.01 eAED:0.01 QI:259|0.75|0.8|1|0.75|0.6|5|174|619; (*GB) gi|225428969|ref|XP_002264153.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc10g049660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:41809625-41812564 transcript_region:SL2.40ch10:41809625..41812564- go_terms:GO:0005515,GO:0009416 functional_description:"Transposon protein Mutator sub-class (AHRD V1 **-- B6U1M7_MAIZE); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00008414g0009.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.2|1|1|5|0|193 NbS00004957g0115.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|1|1|3|467|321 NbS00004957g0105.1 protein AED:0.14 eAED:0.14 QI:177|1|0.87|1|0.85|0.75|8|937|515 NbS00004957g0124.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.71|1|0.5|0.71|7|609|385 NbS00004957g0121.1 protein AED:0.13 eAED:0.18 QI:0|0|0|1|0.5|0.33|3|0|738 NbS00004957g0101.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.25|1|1|1|4|0|695 NbS00004957g0127.1 protein AED:0.47 eAED:0.51 QI:0|0|0|1|0|0.5|2|0|92 NbS00018306g0005.1 protein AED:0.09 eAED:0.09 QI:162|0.8|0.81|0.93|0.53|0.75|16|291|538; (*GB) gi|359484723|ref|XP_002263200.2| (e_value=0.0) PREDICTED: probable anion transporter 6, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3E9A0|ANTR6_ARATH (e_value=0.0) Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1;; (*TAIR) AT5G20380.1 (e_value=0.0) | Symbols: PHT4;5 | phosphate transporter 4;5 | chr5:6887936-6892358 REVERSE LENGTH=517;; (*ITAG) Solyc07g007560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2226487-2235811 transcript_region:SL2.40ch07:2226487..2235811- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter 3 (AHRD V1 **-* B5AU16_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00018306g0006.1 protein AED:0.14 eAED:0.15 QI:307|0.57|0.87|1|0.42|0.5|8|169|496; (*GB) gi|225446203|ref|XP_002263173.1| (e_value=0.0) PREDICTED: heparanase-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q9FZP1|HPSE3_ARATH (e_value=0.0) Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2;; (*TAIR) AT5G34940.2 (e_value=0.0) | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235912-13238718 REVERSE LENGTH=536;; (*ITAG) Solyc07g007550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2221355-2226460 transcript_region:SL2.40ch07:2221355..2226460+ go_terms:GO:0030305,GO:0004566 functional_description:"Heparanase (AHRD V1 **** A2Y9Y7_ORYSI); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0030305,GO:0004566 NbS00057456g0003.1 protein AED:0.40 eAED:0.40 QI:155|0.6|0.45|1|0.7|0.63|11|0|435; (*GB) gi|224112821|ref|XP_002332699.1| (e_value=2e-147) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51180.2 (e_value=4e-133) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20797360-20799929 FORWARD LENGTH=357;; (*ITAG) Solyc05g052020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61505374-61513495 transcript_region:SL2.40ch05:61505374..61513495+ functional_description:"Serine esterase family protein (AHRD V1 **-- B6SYS8_MAIZE); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00058929g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|0|1|2|1975|126; (*GB) gi|359491762|ref|XP_002266495.2| (e_value=2e-62) PREDICTED: uncharacterized protein LOC100260307 isoform 1 [Vitis vinifera];; (*TAIR) AT5G08060.1 (e_value=4e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2580588-2580983 FORWARD LENGTH=131;; (*ITAG) Solyc02g088930.2.1 (e_value=5e-69) genomic_reference:SL2.40ch02 gene_region:45429155-45433888 transcript_region:SL2.40ch02:45429155..45433888+ functional_description:"Upf2 (AHRD V1 ***- A1YQZ3_VOLCA)"; NbS00056116g0001.1 protein AED:0.28 eAED:0.28 QI:222|0.57|0.5|1|1|1|8|0|407; (*GB) gi|2501647|sp|Q42967.1|DCUP_TOBAC (e_value=0.0) RecName: Full=Uroporphyrinogen decarboxylase, chloroplastic; Short=UPD; Short=URO-D; Flags: Precursor;; (*SWP) sp|Q42967|DCUP_TOBAC (e_value=0.0) Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1;; (*TAIR) AT2G40490.1 (e_value=0.0) | Symbols: HEME2 | Uroporphyrinogen decarboxylase | chr2:16912961-16914988 FORWARD LENGTH=394;; (*ITAG) Solyc06g048730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28105228-28112767 transcript_region:SL2.40ch06:28105228..28112767- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** C6TEE8_SOYBN); contains Interpro domain(s) IPR000257 Uroporphyrinogen decarboxylase (URO-D) "; GO:0004853,GO:0042803 NbS00057141g0005.1 protein AED:0.39 eAED:0.40 QI:0|0.5|0|1|0.5|0.33|3|668|201; (*GB) gi|225423515|ref|XP_002274549.1| (e_value=4e-35) PREDICTED: probable WRKY transcription factor 57 [Vitis vinifera];; (*SWP) sp|Q9C983|WRK57_ARATH (e_value=1e-22) Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1;; (*TAIR) AT1G69310.2 (e_value=1e-23) | Symbols: WRKY57, ATWRKY57 | WRKY DNA-binding protein 57 | chr1:26056118-26057909 REVERSE LENGTH=287;; (*ITAG) Solyc05g012500.2.1 (e_value=2e-61) genomic_reference:SL2.40ch05 gene_region:5742002-5745384 transcript_region:SL2.40ch05:5742002..5745384- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 *-*- Q6IEQ2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00026247g0013.1 protein AED:0.08 eAED:0.08 QI:212|1|0.91|1|0.90|0.91|12|416|454; (*GB) gi|255552979|ref|XP_002517532.1| (e_value=0.0) D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q944I4|GLYK_ARATH (e_value=0.0) D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2;; (*TAIR) AT1G80380.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30217332-30219784 FORWARD LENGTH=456;; (*ITAG) Solyc03g120430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62875286-62878923 transcript_region:SL2.40ch03:62875286..62878923- go_terms:GO:0008887 functional_description:"Glycerate kinase (AHRD V1 **** C1DYY5_9CHLO)"; GO:0008887 NbS00026247g0012.1 protein AED:0.15 eAED:0.15 QI:289|0.6|0.72|0.90|0.4|0.63|11|0|372; (*GB) gi|224073784|ref|XP_002304171.1| (e_value=4e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C968|CCA24_ARATH (e_value=2e-85) Cyclin-A2-4 OS=Arabidopsis thaliana GN=CYCA2-4 PE=2 SV=1;; (*TAIR) AT1G80370.1 (e_value=2e-86) | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30214694-30216861 FORWARD LENGTH=461;; (*ITAG) Solyc03g120440.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62880005-62884582 transcript_region:SL2.40ch03:62880005..62884582- go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 **** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00026247g0011.1 protein AED:0.23 eAED:0.24 QI:0|0.85|0.75|1|0.42|0.62|8|0|335; (*GB) gi|255552987|ref|XP_002517536.1| (e_value=0.0) aspartate aminotransferase, putative [Ricinus communis];; (*SWP) sp|O67781|AAT_AQUAE (e_value=2e-39) Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1;; (*TAIR) AT1G80360.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:30208736-30210643 REVERSE LENGTH=394;; (*ITAG) Solyc03g120450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62886665-62893048 transcript_region:SL2.40ch03:62886665..62893048- go_terms:GO:0009058,GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- Q39Q29_GEOMG); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00026247g0010.1 protein AED:0.31 eAED:0.31 QI:721|0|0.5|0.5|0|0|2|0|78 NbS00050287g0004.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|129 NbS00023942g0003.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|0.5|4|0|98 NbS00030840g0004.1 protein AED:0.15 eAED:0.17 QI:0|0|0|0.66|0|0|3|0|286; (*GB) gi|350540630|ref|NP_001234244.1| (e_value=3e-102) CONSTANS interacting protein 2a [Solanum lycopersicum];; (*SWP) sp|Q9SMP0|NFYC1_ARATH (e_value=7e-89) Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1;; (*TAIR) AT3G48590.1 (e_value=5e-90) | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234;; (*ITAG) Solyc06g072040.1.1 (e_value=5e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40788275-40788973 transcript_region:SL2.40ch06:40788275..40788973- go_terms:GO:0016563,GO:0003700 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0016563,GO:0003700 NbS00038832g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|422; (*GB) gi|62241075|dbj|BAD93694.1| (e_value=6e-92) acyltransferase-like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=2e-72) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=4e-77) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc11g067270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50096678-50097970 transcript_region:SL2.40ch11:50096678..50097970+ go_terms:GO:0016740 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X8_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00009911g0001.1 protein AED:0.05 eAED:0.05 QI:306|1|0.8|1|0|0.2|5|889|1339; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=0.0) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=0.0) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=0.0) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g071420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51985618-51989247 transcript_region:SL2.40ch11:51985618..51989247+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00009911g0006.1 protein AED:0.10 eAED:0.10 QI:114|0.5|1|1|0|0|3|170|77 NbS00045834g0006.1 protein AED:0.12 eAED:0.12 QI:556|1|1|1|0.5|0.4|5|408|388; (*GB) gi|225438446|ref|XP_002275069.1| (e_value=1e-173) PREDICTED: probable protein phosphatase 2C 47-like [Vitis vinifera];; (*SWP) sp|Q9SD02|P2C47_ARATH (e_value=8e-157) Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1;; (*TAIR) AT3G51470.1 (e_value=6e-158) | Symbols: | Protein phosphatase 2C family protein | chr3:19097924-19099244 REVERSE LENGTH=361;; (*ITAG) Solyc02g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40767940-40771145 transcript_region:SL2.40ch02:40767940..40771145+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00029930g0003.1 protein AED:0.13 eAED:0.13 QI:361|1|1|1|1|1|4|175|208; (*GB) gi|15239327|ref|NP_196225.1| (e_value=2e-99) tropine dehydrogenase [Arabidopsis thaliana];; (*SWP) sp|Q9ASX2|TRNH1_ARATH (e_value=1e-80) Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1;; (*TAIR) AT5G06060.1 (e_value=4e-102) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc06g083470.2.1 (e_value=6e-132) genomic_reference:SL2.40ch06 gene_region:45158037-45159823 transcript_region:SL2.40ch06:45158037..45159823- go_terms:GO:0008152,GO:0055114 functional_description:"Tropinone reductase-like protein 16 (AHRD V1 **-- B2BXZ1_9BRAS); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00023848g0007.1 protein AED:0.02 eAED:0.02 QI:66|0.8|0.66|1|1|1|6|618|712; (*GB) gi|302143274|emb|CBI21835.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LRK9|TAF1A_ARATH (e_value=1e-135) Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1;; (*TAIR) AT1G32750.1 (e_value=9e-137) | Symbols: HAF01, HAF1, HAC13, GTD1, TAF1 | HAC13 protein (HAC13) | chr1:11846385-11856261 REVERSE LENGTH=1919;; (*ITAG) Solyc07g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1668427-1692877 transcript_region:SL2.40ch07:1668427..1692877+ go_terms:GO:0003712 functional_description:"Transcription initiation factor TFIID subunit 1 (AHRD V1 *--* B0W9Q3_CULQU); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003712 NbS00023848g0010.1 protein AED:0.17 eAED:0.17 QI:284|0.88|0.7|1|0.77|0.6|10|0|735; (*GB) gi|1698548|gb|AAB37246.1| (e_value=0.0) calmodulin-binding protein [Nicotiana tabacum];; (*TAIR) AT5G57580.1 (e_value=0.0) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647;; (*ITAG) Solyc07g006830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1694757-1701924 transcript_region:SL2.40ch07:1694757..1701924+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00023848g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|255576164|ref|XP_002528976.1| (e_value=3e-12) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc10g051090.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00005029g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|329|304; (*GB) gi|359492223|ref|XP_003634385.1| (e_value=9e-101) PREDICTED: uncharacterized protein LOC100854357 [Vitis vinifera];; (*ITAG) Solyc08g062420.2.1 (e_value=7e-165) genomic_reference:SL2.40ch08 gene_region:48280886-48282192 transcript_region:SL2.40ch08:48280886..48282192- functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 ***- Q9FFJ8_ARATH)"; NbS00037361g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|131167|sp|P29302.1|PSAD_NICSY (e_value=6e-132) RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor;; (*SWP) sp|P29302|PSAD_NICSY (e_value=2e-133) Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1;; (*TAIR) AT1G03130.1 (e_value=1e-99) | Symbols: PSAD-2 | photosystem I subunit D-2 | chr1:753528-754142 REVERSE LENGTH=204;; (*ITAG) Solyc06g054260.1.1 (e_value=1e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33565231-33565857 transcript_region:SL2.40ch06:33565231..33565857- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit II (AHRD V1 ***- B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD "; GO:0009538 NbC26311172g0004.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|172; (*GB) gi|388519607|gb|AFK47865.1| (e_value=1e-39) unknown [Lotus japonicus];; (*SWP) sp|O49813|OLEE1_BETPN (e_value=9e-41) Olee1-like protein OS=Betula pendula PE=2 SV=1;; (*TAIR) AT4G18596.1 (e_value=1e-40) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr4:10239114-10239728 FORWARD LENGTH=172;; (*ITAG) Solyc02g076860.2.1 (e_value=5e-90) genomic_reference:SL2.40ch02 gene_region:36558814-36560643 transcript_region:SL2.40ch02:36558814..36560643- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00018875g0001.1 protein AED:0.06 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|167 NbS00018875g0010.1 protein AED:0.22 eAED:0.22 QI:233|0.5|0.55|1|0.62|0.55|9|307|333; (*GB) gi|255550079|ref|XP_002516090.1| (e_value=5e-117) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11960.1 (e_value=2e-114) | Symbols: | Protein of unknown function (DUF803) | chr5:3858852-3861462 REVERSE LENGTH=344;; (*ITAG) Solyc06g036780.2.1 (e_value=5e-150) genomic_reference:SL2.40ch06 gene_region:24511239-24528169 transcript_region:SL2.40ch06:24511239..24528169+ go_terms:GO:0016020 functional_description:"Os01g0708300 protein (Fragment) (AHRD V1 *-*- Q0JJY9_ORYSJ); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00035323g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.2|1|0.75|0.8|5|0|703; (*GB) gi|225429428|ref|XP_002278577.1| (e_value=0.0) PREDICTED: protein EARLY FLOWERING 3-like [Vitis vinifera];; (*SWP) sp|O82804|ELF3_ARATH (e_value=4e-90) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=3e-91) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc08g065870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51419908-51425076 transcript_region:SL2.40ch08:51419908..51425076+ go_terms:GO:0003700,GO:0008022 functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; GO:0003700,GO:0008022 NbS00053197g0001.1 protein AED:0.26 eAED:0.26 QI:1437|0.5|0.66|1|0.5|0.66|3|0|254; (*GB) gi|225450417|ref|XP_002276071.1| (e_value=8e-113) PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera];; (*SWP) sp|Q8VYE4|PTR12_ARATH (e_value=7e-69) Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1;; (*TAIR) AT1G27040.2 (e_value=4e-70) | Symbols: | Major facilitator superfamily protein | chr1:9386893-9389838 REVERSE LENGTH=563;; (*ITAG) Solyc10g039290.1.1 (e_value=9e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20937256-20939892 transcript_region:SL2.40ch10:20937256..20939892- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00017779g0005.1 protein AED:0.30 eAED:0.33 QI:91|0.5|0.8|1|1|1|5|202|308; (*GB) gi|77744913|gb|ABB02410.1| (e_value=6e-180) chloroplast lipocalin [Solanum tuberosum];; (*TAIR) AT3G47860.1 (e_value=3e-135) | Symbols: CHL | chloroplastic lipocalin | chr3:17656778-17658269 REVERSE LENGTH=353;; (*ITAG) Solyc12g005180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:124158-127837 transcript_region:SL2.40ch12:124158..127837- go_terms:GO:0005488,GO:0006810 functional_description:"Chloroplast lipocalin (AHRD V1 ***- Q38JB4_SOLTU); contains Interpro domain(s) IPR013208 Lipocalin-like "; GO:0005488,GO:0006810 NbS00001388g0010.1 protein AED:0.26 eAED:0.29 QI:0|0.77|0.8|1|0.66|0.6|10|198|458; (*GB) gi|225423607|ref|XP_002274221.1| (e_value=2e-164) PREDICTED: GTP-binding protein ERG-like [Vitis vinifera];; (*SWP) sp|O82626|ERG_ANTMA (e_value=4e-164) GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1;; (*TAIR) AT1G30960.1 (e_value=5e-151) | Symbols: | GTP-binding family protein | chr1:11037755-11039977 REVERSE LENGTH=437;; (*ITAG) Solyc02g081660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40107112-40113981 transcript_region:SL2.40ch02:40107112..40113981+ go_terms:GO:0003924 functional_description:"GTP-binding protein era homolog (AHRD V1 ***- D7AAD9_STAND); contains Interpro domain(s) IPR005662 GTP-binding protein Era "; GO:0003924 NbS00001388g0009.1 protein AED:0.48 eAED:0.71 QI:0|0|0|0.5|0.66|0.75|4|0|162; (*GB) gi|225463149|ref|XP_002266845.1| (e_value=1e-29) PREDICTED: enhancer of polycomb homolog 2 [Vitis vinifera];; (*TAIR) AT1G16690.1 (e_value=2e-25) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr1:5706458-5709371 FORWARD LENGTH=439;; (*ITAG) Solyc02g081650.2.1 (e_value=8e-56) genomic_reference:SL2.40ch02 gene_region:40098912-40106547 transcript_region:SL2.40ch02:40098912..40106547+ go_terms:GO:0003700 functional_description:"Enhancer of polycomb-like protein (AHRD V1 ***- B9N5C9_POPTR); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003700 NbS00001388g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|412; (*GB) gi|207083721|gb|ACI23252.1| (e_value=0.0) ANANTHA [Solanum lycopersicum];; (*SWP) sp|Q39090|UFO_ARATH (e_value=1e-139) Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2;; (*TAIR) AT1G30950.1 (e_value=1e-140) | Symbols: UFO | F-box family protein | chr1:11036180-11037508 FORWARD LENGTH=442;; (*ITAG) Solyc02g081670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40120235-40121602 transcript_region:SL2.40ch02:40120235..40121602+ go_terms:GO:0008134,GO:0004842 functional_description:"Fimbriata (Fragment) (AHRD V1 **-- Q6QVW9_MIMLE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0008134,GO:0004842 NbS00043074g0007.1 protein AED:0.24 eAED:0.24 QI:248|1|1|1|0.8|0.90|11|425|312; (*GB) gi|11133821|sp|Q9XGH7.1|PP2A_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP2A catalytic subunit;; (*SWP) sp|Q9XGH7|PP2A_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G58500.1 (e_value=0.0) | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635503-21638911 REVERSE LENGTH=313;; (*ITAG) Solyc01g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:617606-624776 transcript_region:SL2.40ch01:617606..624776- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00043074g0008.1 protein AED:0.13 eAED:0.18 QI:0|0.16|0.28|1|0.33|0.42|7|6|330; (*GB) gi|225435712|ref|XP_002283501.1| (e_value=1e-131) PREDICTED: phytoene synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P08196|PSY1_SOLLC (e_value=4e-110) Phytoene synthase 1, chloroplastic OS=Solanum lycopersicum GN=PSY1 PE=1 SV=2;; (*TAIR) AT5G17230.2 (e_value=8e-103) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422;; (*ITAG) Solyc01g005940.2.1 (e_value=1e-164) genomic_reference:SL2.40ch01 gene_region:613955-617183 transcript_region:SL2.40ch01:613955..617183+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 3"; GO:0046905,GO:0016767 NbS00005359g0018.1 protein AED:0.35 eAED:0.36 QI:0|0.5|0.66|1|0.5|0|3|238|112; (*GB) gi|359491215|ref|XP_003634243.1| (e_value=1e-28) PREDICTED: U-box domain-containing protein 54-like [Vitis vinifera];; (*TAIR) AT5G47740.2 (e_value=7e-16) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=246;; (*ITAG) Solyc03g112330.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:56815336-56817659 transcript_region:SL2.40ch03:56815336..56817659+ go_terms:GO:0006950 functional_description:"U-box domain-containing protein 33 (AHRD V1 ***- PUB33_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00005359g0011.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.25|1|1|4|0|127; (*GB) gi|224121770|ref|XP_002318668.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G63135.1 (e_value=1e-18) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25325253-25326440 REVERSE LENGTH=99;; (*ITAG) Solyc03g112290.2.1 (e_value=8e-30) genomic_reference:SL2.40ch03 gene_region:56789943-56794206 transcript_region:SL2.40ch03:56789943..56794206+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005359g0021.1 protein AED:0.35 eAED:0.50 QI:42|0.33|0|1|0|0.25|4|0|119; (*GB) gi|1125691|emb|CAA63965.1| (e_value=2e-47) DnaJ protein [Solanum tuberosum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-42) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=3e-40) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=2e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00005359g0003.1 protein AED:0.05 eAED:0.05 QI:178|0.5|0.66|1|0.5|0.66|3|627|199; (*GB) gi|147798030|emb|CAN71778.1| (e_value=4e-41) hypothetical protein VITISV_019814 [Vitis vinifera];; (*TAIR) AT3G48240.1 (e_value=7e-37) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:17867381-17868007 FORWARD LENGTH=180;; (*ITAG) Solyc06g071750.2.1 (e_value=1e-81) genomic_reference:SL2.40ch06 gene_region:40585640-40586725 transcript_region:SL2.40ch06:40585640..40586725+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00005359g0005.1 protein AED:0.08 eAED:0.08 QI:400|1|1|1|1|0.87|8|832|600; (*GB) gi|255540531|ref|XP_002511330.1| (e_value=0.0) ferric-chelate reductase, putative [Ricinus communis];; (*SWP) sp|Q8VY13|FRO8_ARATH (e_value=0.0) Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1;; (*TAIR) AT5G50160.1 (e_value=0.0) | Symbols: ATFRO8, FRO8 | ferric reduction oxidase 8 | chr5:20415832-20418582 FORWARD LENGTH=728;; (*ITAG) Solyc03g112320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56809755-56812064 transcript_region:SL2.40ch03:56809755..56812064- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **** D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00019466g0010.1 protein AED:0.25 eAED:0.25 QI:134|1|1|1|0.4|0.5|6|365|192; (*GB) gi|225431429|ref|XP_002280184.1| (e_value=1e-56) PREDICTED: uncharacterized protein LOC100252414 [Vitis vinifera];; (*TAIR) AT4G16444.1 (e_value=1e-44) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178;; (*ITAG) Solyc00g007080.2.1 (e_value=8e-85) genomic_reference:SL2.40ch00 gene_region:6694951-6699143 transcript_region:SL2.40ch00:6694951..6699143- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007514 CHD5-like protein "; NbS00019466g0012.1 protein AED:0.23 eAED:0.26 QI:118|1|0.75|1|1|1|4|0|507; (*GB) gi|255561431|ref|XP_002521726.1| (e_value=0.0) srpk, putative [Ricinus communis];; (*SWP) sp|Q45FA5|SRPK_PHYPO (e_value=7e-101) Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1;; (*TAIR) AT2G17530.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:7626518-7628624 FORWARD LENGTH=440;; (*ITAG) Solyc00g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6708738-6712713 transcript_region:SL2.40ch00:6708738..6712713- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U105_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00019466g0014.1 protein AED:0.14 eAED:0.14 QI:149|1|1|1|1|0.8|5|196|185; (*GB) gi|356496559|ref|XP_003517134.1| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100795421 [Glycine max];; (*TAIR) AT4G35530.1 (e_value=1e-58) | Symbols: | phosphatidylinositolglycan-related | chr4:16871925-16873280 REVERSE LENGTH=195;; (*ITAG) Solyc00g007090.2.1 (e_value=6e-114) genomic_reference:SL2.40ch00 gene_region:6702334-6706142 transcript_region:SL2.40ch00:6702334..6706142+ functional_description:"Multi-pass transmembrane protein (AHRD V1 *--- Q5CMR0_CRYHO); contains Interpro domain(s) IPR019328 GPI-GlcNAc transferase complex, PIG-H component "; NbS00020452g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.25|0.5|1|0.75|4|0|117; (*ITAG) Solyc03g097080.2.1 (e_value=1e-29) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00020793g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|371; (*GB) gi|224054986|ref|XP_002298397.1| (e_value=3e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L8Y0|RS21_ARATH (e_value=7e-112) 40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2;; (*TAIR) AT1G58380.1 (e_value=6e-113) | Symbols: XW6 | Ribosomal protein S5 family protein | chr1:21689115-21690085 FORWARD LENGTH=284;; (*ITAG) Solyc04g074300.2.1 (e_value=8e-116) genomic_reference:SL2.40ch04 gene_region:57894185-57896333 transcript_region:SL2.40ch04:57894185..57896333+ go_terms:GO:0003735 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- C5K1T7_AJEDS); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal "; GO:0003735 NbS00020793g0011.1 protein AED:0.28 eAED:0.28 QI:0|0|0.5|1|0|1|2|322|224; (*GB) gi|225457863|ref|XP_002269120.1| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100259118 [Vitis vinifera];; (*TAIR) AT1G76980.1 (e_value=5e-30) | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28926466-28927242 REVERSE LENGTH=258;; (*ITAG) Solyc06g059860.2.1 (e_value=9e-70) genomic_reference:SL2.40ch06 gene_region:34148058-34150076 transcript_region:SL2.40ch06:34148058..34150076+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020793g0012.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.5|0.33|0|4|0|317; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-25) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC24021449g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|64; (*GB) gi|350539791|ref|NP_001234274.1| (e_value=3e-28) mercaptopyruvate sulfurtransferase-like protein [Solanum lycopersicum];; (*SWP) sp|O64530|STR1_ARATH (e_value=3e-24) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.2 (e_value=7e-27) | Symbols: ST1, ATMST1, MST1, ATRDH1 | mercaptopyruvate sulfurtransferase 1 | chr1:29801561-29803679 FORWARD LENGTH=282;; (*ITAG) Solyc07g066580.2.1 (e_value=6e-31) genomic_reference:SL2.40ch07 gene_region:65198760-65204479 transcript_region:SL2.40ch07:65198760..65204479+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like IPR001307 Thiosulphate sulfurtransferase, conserved site "; GO:0004792,GO:0016784 NbS00017369g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|224121082|ref|XP_002330899.1| (e_value=6e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT2G44310.1 (e_value=7e-56) | Symbols: | Calcium-binding EF-hand family protein | chr2:18309285-18309713 FORWARD LENGTH=142;; (*ITAG) Solyc01g073710.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:70324522-70325265 transcript_region:SL2.40ch01:70324522..70325265+ go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7LKY8_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00039263g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|98 NbS00039263g0103.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|168 NbS00016094g0012.1 protein AED:0.12 eAED:0.12 QI:379|0.83|0.85|1|0.66|0.71|7|362|380; (*GB) gi|224125740|ref|XP_002329706.1| (e_value=6e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=1e-31) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT1G73480.1 (e_value=8e-154) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27629266-27632486 FORWARD LENGTH=463;; (*ITAG) Solyc03g098020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00033656g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|255551673|ref|XP_002516882.1| (e_value=1e-59) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q9LIF1|GRS10_ARATH (e_value=2e-53) Monothiol glutaredoxin-S10 OS=Arabidopsis thaliana GN=GRXS10 PE=3 SV=1;; (*TAIR) AT3G21460.1 (e_value=1e-54) | Symbols: | Glutaredoxin family protein | chr3:7557567-7557875 REVERSE LENGTH=102;; (*ITAG) Solyc01g067440.2.1 (e_value=2e-70) genomic_reference:SL2.40ch01 gene_region:68507627-68508260 transcript_region:SL2.40ch01:68507627..68508260- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9MZY7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00055592g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.5|0.7|0.66|0.6|10|0|625; (*GB) gi|147846709|emb|CAN80639.1| (e_value=2e-25) hypothetical protein VITISV_026888 [Vitis vinifera];; (*ITAG) Solyc04g016290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7074883-7078461 transcript_region:SL2.40ch04:7074883..7078461+ go_terms:GO:0006353 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011112 Rho termination factor, N-terminal "; GO:0006353 NbS00055592g0002.1 protein AED:0.37 eAED:0.37 QI:0|1|0.8|1|0.5|0.4|5|282|83 NbS00028972g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|342306006|dbj|BAK55739.1| (e_value=0.0) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=5e-138) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=3e-120) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc12g088710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62411500-62412957 transcript_region:SL2.40ch12:62411500..62412957- go_terms:GO:0005515,GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0005515,GO:0008152 NbS00028972g0002.1 protein AED:0.29 eAED:0.29 QI:254|0.5|1|1|1|1|3|142|81; (*GB) gi|224063487|ref|XP_002301168.1| (e_value=3e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=3e-27) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=2e-28) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc04g078620.2.1 (e_value=1e-31) genomic_reference:SL2.40ch04 gene_region:60902088-60906206 transcript_region:SL2.40ch04:60902088..60906206+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00018762g0006.1 protein AED:0.10 eAED:0.10 QI:207|1|1|1|1|1|5|346|166; (*GB) gi|297844392|ref|XP_002890077.1| (e_value=4e-65) hypothetical protein ARALYDRAFT_471677 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=2e-66) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=2e-67) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc01g005390.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:276161-277987 transcript_region:SL2.40ch01:276161..277987+ go_terms:GO:0008486 functional_description:"Nudix hydrolase 4 (AHRD V1 ***- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00023849g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.5|4|0|421; (*GB) gi|225443924|ref|XP_002278770.1| (e_value=0.0) PREDICTED: probable inositol transporter 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9C757|INT2_ARATH (e_value=2e-172) Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1;; (*TAIR) AT1G30220.1 (e_value=2e-173) | Symbols: ATINT2, INT2 | inositol transporter 2 | chr1:10632957-10635439 REVERSE LENGTH=580;; (*ITAG) Solyc08g048290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:38629155-38632748 transcript_region:SL2.40ch08:38629155..38632748+ go_terms:GO:0005366 functional_description:"Myo-inositol transporter 1 (AHRD V1 *-** C1GD33_PARBD); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366 NbS00038180g0017.1 protein AED:0.08 eAED:0.08 QI:0|0.55|0.6|1|0.88|0.8|10|0|982; (*GB) gi|115610|sp|P27154.1|CAPP_TOBAC (e_value=0.0) RecName: Full=Phosphoenolpyruvate carboxylase; Short=PEPC; Short=PEPCase;; (*SWP) sp|P27154|CAPP_TOBAC (e_value=0.0) Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1;; (*TAIR) AT3G14940.1 (e_value=0.0) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968;; (*ITAG) Solyc10g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1686062-1694134 transcript_region:SL2.40ch10:1686062..1694134- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 ***- A6YM32_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00038180g0009.1 protein AED:0.12 eAED:0.19 QI:0|0|0|1|1|1|2|0|270 NbS00038180g0018.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|1|0|0.25|4|0|601; (*GB) gi|559237|gb|AAA98492.1| (e_value=1e-39) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00005580g0005.1 protein AED:0.20 eAED:0.24 QI:0|0.7|0.45|1|0.6|0.63|11|44|565; (*GB) gi|255544928|ref|XP_002513525.1| (e_value=7e-135) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q10M00|C3H22_ORYSJ (e_value=5e-75) Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2;; (*TAIR) AT3G21100.2 (e_value=5e-73) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399162-7401870 FORWARD LENGTH=602;; (*ITAG) Solyc11g065320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47794452-47797533 transcript_region:SL2.40ch11:47794452..47797533- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 23 (AHRD V1 ***- C3H23_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00005580g0004.1 protein AED:0.40 eAED:0.53 QI:291|0|0|1|0|0|3|0|88; (*GB) gi|19423979|gb|AAL87320.1| (e_value=4e-21) unknown protein [Arabidopsis thaliana];; (*SWP) sp|Q9SV09|C3H46_ARATH (e_value=1e-22) Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1;; (*TAIR) AT3G51950.2 (e_value=9e-24) | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540;; (*ITAG) Solyc11g065320.1.1 (e_value=5e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47794452-47797533 transcript_region:SL2.40ch11:47794452..47797533- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 23 (AHRD V1 ***- C3H23_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00010774g0007.1 protein AED:0.13 eAED:0.13 QI:41|0.92|0.92|1|0.61|0.71|14|39|516; (*GB) gi|359485399|ref|XP_002274770.2| (e_value=0.0) PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1-like [Vitis vinifera];; (*SWP) sp|P41695|BUB1_YEAST (e_value=6e-48) Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2;; (*TAIR) AT2G20635.1 (e_value=0.0) | Symbols: | ATP binding;protein kinases;protein serine/threonine kinases | chr2:8900410-8903384 FORWARD LENGTH=525;; (*ITAG) Solyc07g053820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59563736-59569953 transcript_region:SL2.40ch07:59563736..59569953+ go_terms:GO:0006468 functional_description:"Checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- B3LI47_YEAS1); contains Interpro domain(s) IPR015661 Mitotic checkpoint serine/threonine protein kinase, Bub1 "; GO:0006468 NbS00004125g0001.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|1|1|2|0|282; (*GB) gi|193290724|gb|ACF17670.1| (e_value=0.0) putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum];; (*SWP) sp|Q32RM2|ODPB_ZYGCR (e_value=2e-149) Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2;; (*TAIR) AT1G30120.1 (e_value=2e-178) | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 beta | chr1:10584350-10586477 REVERSE LENGTH=406;; (*ITAG) Solyc04g008590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2195990-2201197 transcript_region:SL2.40ch04:2195990..2201197+ go_terms:GO:0008152 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 ***- B6TQ36_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0008152 NbS00030880g0010.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|0|0.33|3|126|194; (*GB) gi|225449738|ref|XP_002270953.1| (e_value=3e-81) PREDICTED: RING-H2 finger protein ATL38 [Vitis vinifera];; (*SWP) sp|Q8W571|ATL32_ARATH (e_value=2e-17) RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3;; (*TAIR) AT4G40070.1 (e_value=1e-18) | Symbols: | RING/U-box superfamily protein | chr4:18576533-18577504 FORWARD LENGTH=323;; (*ITAG) Solyc05g055390.2.1 (e_value=2e-108) genomic_reference:SL2.40ch05 gene_region:64196853-64201334 transcript_region:SL2.40ch05:64196853..64201334+ go_terms:GO:0005515,GO:0004842 functional_description:"Ring finger protein (AHRD V1 *-*- D7FY13_ECTSI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00030880g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|1|1|2|7|513; (*GB) gi|299893504|gb|ADJ57933.1| (e_value=0.0) cytochrome P450 [Solanum torvum];; (*SWP) sp|P37124|C77A2_SOLME (e_value=0.0) Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1;; (*TAIR) AT5G04660.1 (e_value=0.0) | Symbols: CYP77A4 | cytochrome P450, family 77, subfamily A, polypeptide 4 | chr5:1336049-1337587 FORWARD LENGTH=512;; (*ITAG) Solyc05g055400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64202129-64204627 transcript_region:SL2.40ch05:64202129..64204627- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00050913g0003.1 protein AED:0.05 eAED:0.05 QI:186|0.90|0.83|1|1|0.91|12|395|1490; (*GB) gi|169977306|emb|CAQ18900.1| (e_value=0.0) DNA (cytosine-5) methyltransferase [Nicotiana sylvestris];; (*SWP) sp|P34881|DNMT1_ARATH (e_value=0.0) DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1 PE=1 SV=1;; (*TAIR) AT5G49160.1 (e_value=0.0) | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 | methyltransferase 1 | chr5:19932501-19938186 FORWARD LENGTH=1534;; (*ITAG) Solyc11g030600.2.1 (e_value=0.0) genomic_reference:SL2.40ch11 gene_region:18811587-18827974 transcript_region:SL2.40ch11:18811587..18827974- go_terms:GO:0008168 functional_description:"DNA (Cytosine-5)-methyltransferase (AHRD V1 **** O49889_SOLLC); contains Interpro domain(s) IPR017198 DNA (cytosine-5)-methyltransferase 1 "; GO:0008168 NbS00000811g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.81|1|0.7|0.63|11|533|574; (*GB) gi|257831429|gb|ACV71015.1| (e_value=0.0) UPA15 [Capsicum annuum];; (*SWP) sp|Q9FNI7|CSLA2_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1;; (*TAIR) AT5G22740.1 (e_value=0.0) | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534;; (*ITAG) Solyc11g066820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49711779-49719301 transcript_region:SL2.40ch11:49711779..49719301+ functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-- A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; NbS00028315g0030.1 protein AED:0.21 eAED:0.23 QI:30|0.55|0.5|1|0.66|0.7|10|104|545; (*GB) gi|64460298|gb|AAR32129.2| (e_value=0.0) proton P-ATPase [Nicotiana tabacum];; (*SWP) sp|Q03194|PMA4_NICPL (e_value=0.0) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT1G80660.1 (e_value=0.0) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc00g257110.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:20272521-20276002 transcript_region:SL2.40ch00:20272521..20276002- go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00028315g0003.1 protein AED:0.33 eAED:0.33 QI:106|0.5|0.4|1|1|1|5|0|120; (*GB) gi|296084596|emb|CBI25617.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=6e-27) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=9e-27) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00028315g0028.1 protein AED:0.05 eAED:0.05 QI:67|0.5|0.4|0.8|0.75|0.8|5|0|356; (*GB) gi|379987682|gb|AFD22621.1| (e_value=0.0) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|P84634|DCL4_ARATH (e_value=7e-131) Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2;; (*TAIR) AT5G20320.2 (e_value=5e-132) | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1688;; (*ITAG) Solyc07g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00028315g0034.1 protein AED:0.09 eAED:0.09 QI:165|1|1|1|0.88|0.89|19|246|738; (*GB) gi|225462994|ref|XP_002263791.1| (e_value=0.0) PREDICTED: DNA replication licensing factor mcm5-A-like [Vitis vinifera];; (*SWP) sp|P55862|MCM5A_XENLA (e_value=0.0) DNA replication licensing factor mcm5-A OS=Xenopus laevis GN=mcm5-a PE=1 SV=2;; (*TAIR) AT2G07690.1 (e_value=0.0) | Symbols: MCM5 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:3523379-3527388 REVERSE LENGTH=727;; (*ITAG) Solyc07g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46570-52388 transcript_region:SL2.40ch07:46570..52388- go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2UAJ0_ASPOR); contains Interpro domain(s) IPR008048 MCM protein 5 "; GO:0005515 NbS00028315g0032.1 protein AED:0.14 eAED:0.14 QI:132|0.8|0.83|1|0.6|0.66|6|539|358; (*GB) gi|3021506|emb|CAA65502.1| (e_value=0.0) isocitrate dehydrogenase (NAD+) [Nicotiana tabacum];; (*SWP) sp|P29696|LEU3_SOLTU (e_value=0.0) 3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G03290.1 (e_value=0.0) | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:794043-795939 FORWARD LENGTH=374;; (*ITAG) Solyc08g077930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58989265-58994758 transcript_region:SL2.40ch08:58989265..58994758- go_terms:GO:0005524,GO:0008270 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- Q17P79_AEDAE); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0005524,GO:0008270 NbS00028315g0025.1 protein AED:0.18 eAED:0.18 QI:99|1|1|1|0.88|0.8|10|523|449; (*GB) gi|296084591|emb|CBI25612.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G22650.1 (e_value=1e-160) | Symbols: | FAD-dependent oxidoreductase family protein | chr2:9624703-9626931 REVERSE LENGTH=420;; (*ITAG) Solyc07g005240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:213548-218992 transcript_region:SL2.40ch07:213548..218992- go_terms:GO:0016491 functional_description:"FAD-dependent oxidoreductase family protein (AHRD V1 **-- D7LAA7_ARALY); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00028315g0023.1 protein AED:0.29 eAED:0.29 QI:910|1|0.57|1|1|1|7|0|177; (*GB) gi|359482420|ref|XP_003632772.1| (e_value=1e-68) PREDICTED: DCN1-like protein 4 isoform 2 [Vitis vinifera];; (*SWP) sp|Q96GG9|DCNL1_HUMAN (e_value=1e-19) DCN1-like protein 1 OS=Homo sapiens GN=DCUN1D1 PE=1 SV=1;; (*TAIR) AT1G15860.3 (e_value=1e-68) | Symbols: | Domain of unknown function (DUF298) | chr1:5455055-5456741 FORWARD LENGTH=236;; (*ITAG) Solyc07g005060.2.1 (e_value=6e-106) genomic_reference:SL2.40ch07 gene_region:104197-109310 transcript_region:SL2.40ch07:104197..109310+ go_terms:GO:0043130 functional_description:"DCN1-like protein 4 (AHRD V1 ***- B6TI85_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00028315g0035.1 protein AED:0.52 eAED:0.72 QI:0|0.2|0|0.66|0.8|0.66|6|0|273; (*GB) gi|379987682|gb|AFD22621.1| (e_value=4e-138) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|A7LFZ6|DCL4_ORYSJ (e_value=6e-37) Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1;; (*TAIR) AT5G20320.1 (e_value=6e-34) | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1702;; (*ITAG) Solyc07g005030.2.1 (e_value=3e-108) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00008608g0020.1 protein AED:0.07 eAED:0.07 QI:6|0.66|0.25|1|0.66|1|4|0|269; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=2e-155) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=1e-123) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=9e-125) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=4e-158) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00008608g0015.1 protein AED:0.13 eAED:0.13 QI:0|0.92|0.8|1|1|1|15|0|788; (*GB) gi|359484258|ref|XP_002276918.2| (e_value=0.0) PREDICTED: beta-galactosidase 7-like [Vitis vinifera];; (*SWP) sp|Q9C6W4|BGA15_ARATH (e_value=0.0) Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1;; (*TAIR) AT1G31740.1 (e_value=0.0) | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908 REVERSE LENGTH=786;; (*ITAG) Solyc07g042220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52608232-52612572 transcript_region:SL2.40ch07:52608232..52612572+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9RR68_RICCO); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00008608g0006.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|225444653|ref|XP_002277621.1| (e_value=1e-33) PREDICTED: ethylene-responsive transcription factor ERF017 [Vitis vinifera];; (*SWP) sp|Q9C591|ERF16_ARATH (e_value=5e-25) Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1;; (*TAIR) AT5G21960.1 (e_value=4e-26) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:7258560-7259210 REVERSE LENGTH=216;; (*ITAG) Solyc07g042230.1.1 (e_value=1e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:52615428-52615931 transcript_region:SL2.40ch07:52615428..52615931- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00008608g0021.1 protein AED:0.21 eAED:0.22 QI:89|0.9|0.90|1|0.8|0.63|11|350|311; (*GB) gi|359487840|ref|XP_003633661.1| (e_value=9e-126) PREDICTED: protein MAK16 homolog B-like [Vitis vinifera];; (*SWP) sp|Q66L33|MK16A_XENLA (e_value=9e-73) Protein MAK16 homolog A OS=Xenopus laevis GN=mak16-a PE=2 SV=1;; (*TAIR) AT1G23280.1 (e_value=1e-114) | Symbols: | MAK16 protein-related | chr1:8260865-8262650 REVERSE LENGTH=303;; (*ITAG) Solyc01g005810.2.1 (e_value=2e-138) genomic_reference:SL2.40ch01 gene_region:530323-534729 transcript_region:SL2.40ch01:530323..534729+ functional_description:"Mak16 protein (AHRD V1 *-*- Q2HUC0_MEDTR); contains Interpro domain(s) IPR006958 Mak16 protein "; NbS00008608g0003.1 protein AED:0.26 eAED:0.26 QI:764|0.92|0.78|1|1|1|14|0|785; (*GB) gi|132449787|gb|ABO33637.1| (e_value=0.0) auxin response factor, partial [Solanum lycopersicum];; (*SWP) sp|Q8RYC8|ARFS_ARATH (e_value=0.0) Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2;; (*TAIR) AT1G19220.1 (e_value=0.0) | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086;; (*ITAG) Solyc07g042260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52687405-52694764 transcript_region:SL2.40ch07:52687405..52694764- go_terms:GO:0046983 functional_description:"Auxin response factor 1 (AHRD V1 *-*- Q6L8U3_CUCSA); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046983 NbS00048246g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.25|1|1|1|4|0|454; (*GB) gi|269931969|gb|ACZ54502.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate [Petunia x hybrida];; (*SWP) sp|Q42881|1A13_SOLLC (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=0.0) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc03g043890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11536608-11538987 transcript_region:SL2.40ch03:11536608..11538987+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00020599g0006.1 protein AED:0.02 eAED:0.02 QI:11|1|0.75|1|1|1|4|0|150; (*GB) gi|14625425|dbj|BAB61919.1| (e_value=3e-102) calmodulin NtCaM13 [Nicotiana tabacum];; (*SWP) sp|O23320|CML8_ARATH (e_value=5e-87) Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=2 SV=1;; (*TAIR) AT4G14640.1 (e_value=4e-88) | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397800-8399996 FORWARD LENGTH=151;; (*ITAG) Solyc06g053930.2.1 (e_value=5e-103) genomic_reference:SL2.40ch06 gene_region:33328449-33330360 transcript_region:SL2.40ch06:33328449..33330360+ go_terms:GO:0005516 functional_description:"Calmodulin (AHRD V1 **** Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005516 NbS00020599g0010.1 protein AED:0.49 eAED:0.69 QI:65|0|0|1|0|0.5|2|0|66 NbS00033626g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.5|1|0.85|0.87|8|191|394; (*GB) gi|225431715|ref|XP_002265166.1| (e_value=0.0) PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=5e-119) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT5G09300.2 (e_value=0.0) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886291 REVERSE LENGTH=401;; (*ITAG) Solyc05g056480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64903038-64907010 transcript_region:SL2.40ch05:64903038..64907010+ go_terms:GO:0003826 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 **** D6YUM5_WADCW); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003826 NbS00033626g0006.1 protein AED:0.24 eAED:0.25 QI:69|1|0.87|1|1|1|8|0|398; (*GB) gi|356510802|ref|XP_003524123.1| (e_value=4e-176) PREDICTED: SAL1 phosphatase-like [Glycine max];; (*SWP) sp|Q42546|DPNP1_ARATH (e_value=1e-169) SAL1 phosphatase OS=Arabidopsis thaliana GN=SAL1 PE=1 SV=1;; (*TAIR) AT5G63980.1 (e_value=3e-172) | Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 | Inositol monophosphatase family protein | chr5:25609840-25611802 FORWARD LENGTH=407;; (*ITAG) Solyc05g056490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64907109-64913076 transcript_region:SL2.40ch05:64907109..64913076- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0008441 NbS00039632g0005.1 protein AED:0.10 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|165|255; (*GB) gi|225462707|ref|XP_002267282.1| (e_value=9e-97) PREDICTED: myosin IB heavy chain [Vitis vinifera];; (*SWP) sp|P34092|MYOB_DICDI (e_value=2e-16) Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2;; (*TAIR) AT5G53310.1 (e_value=2e-83) | Symbols: | myosin heavy chain-related | chr5:21634657-21636094 FORWARD LENGTH=210;; (*ITAG) Solyc06g051820.2.1 (e_value=5e-131) genomic_reference:SL2.40ch06 gene_region:31988978-31995330 transcript_region:SL2.40ch06:31988978..31995330- go_terms:GO:0016459 functional_description:"Myosin (AHRD V1 ***- D2UY43_NAEGR); contains Interpro domain(s) IPR010926 Myosin tail 2 "; GO:0016459 NbS00032404g0012.1 protein AED:0.18 eAED:0.18 QI:132|1|1|1|0.75|0.8|5|359|358; (*GB) gi|357438517|ref|XP_003589534.1| (e_value=5e-166) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=2e-141) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=2e-142) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc12g089350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62923331-62926988 transcript_region:SL2.40ch12:62923331..62926988+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00032404g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.62|0.55|1|0.87|0.77|9|0|721; (*GB) gi|225457879|ref|XP_002269753.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=1e-117) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc01g006660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1249071-1255565 transcript_region:SL2.40ch01:1249071..1255565- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8LAE1_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00032404g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.09|1|1|1|11|0|642; (*GB) gi|225457879|ref|XP_002269753.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-103) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc04g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00058581g0003.1 protein AED:0.21 eAED:0.52 QI:0|0|0.5|1|0|0.5|2|988|370; (*GB) gi|255581927|ref|XP_002531762.1| (e_value=6e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FH18|WIP2_ARATH (e_value=5e-21) WPP domain-interacting protein 2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1;; (*TAIR) AT5G56210.1 (e_value=4e-22) | Symbols: WIP2 | WPP domain interacting protein 2 | chr5:22750660-22752363 REVERSE LENGTH=509;; (*ITAG) Solyc07g066170.2.1 (e_value=2e-42) genomic_reference:SL2.40ch07 gene_region:64876218-64880395 transcript_region:SL2.40ch07:64876218..64880395- functional_description:"WPP domain-interacting protein 1 (AHRD V1 ***- WIP1_ARATH)"; NbS00050889g0004.1 protein AED:0.08 eAED:0.08 QI:21|0.87|0.77|1|0.62|0.55|9|29|383; (*GB) gi|359491993|ref|XP_002283216.2| (e_value=7e-119) PREDICTED: uncharacterized protein LOC100248821 [Vitis vinifera];; (*TAIR) AT2G38185.2 (e_value=3e-31) | Symbols: | RING/U-box superfamily protein | chr2:16000155-16002699 FORWARD LENGTH=441;; (*ITAG) Solyc09g005320.2.1 (e_value=7e-26) genomic_reference:SL2.40ch09 gene_region:245604-252638 transcript_region:SL2.40ch09:245604..252638+ go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RNF34 (AHRD V1 *--- C0H8Z5_SALSA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00052035g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|101 NbS00030091g0002.1 protein AED:0.27 eAED:0.27 QI:7|-1|0|1|-1|0|1|0|152; (*ITAG) Solyc10g078440.1.1 (e_value=6e-33) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59592591-59593016 transcript_region:SL2.40ch10:59592591..59593016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00026969g0007.1 protein AED:0.06 eAED:0.10 QI:28|0.66|0.5|1|0.66|0.25|4|0|260; (*GB) gi|359485318|ref|XP_002278078.2| (e_value=3e-105) PREDICTED: uncharacterized protein LOC100267770 [Vitis vinifera];; (*TAIR) AT2G30900.1 (e_value=3e-94) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055790.1.1 (e_value=6e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61044778-61047041 transcript_region:SL2.40ch07:61044778..61047041+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026969g0008.1 protein AED:0.24 eAED:0.31 QI:43|0|0|0.75|0.33|0.25|4|0|146; (*GB) gi|359485318|ref|XP_002278078.2| (e_value=3e-14) PREDICTED: uncharacterized protein LOC100267770 [Vitis vinifera];; (*ITAG) Solyc07g055790.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61044778-61047041 transcript_region:SL2.40ch07:61044778..61047041+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00009085g0013.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.33|0.66|1|1|6|0|297; (*GB) gi|350536387|ref|NP_001234500.1| (e_value=0.0) protein phosphatase 2C [Solanum lycopersicum];; (*SWP) sp|Q9LDA7|P2C39_ARATH (e_value=2e-162) Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1;; (*TAIR) AT3G15260.2 (e_value=1e-163) | Symbols: | Protein phosphatase 2C family protein | chr3:5138842-5140242 FORWARD LENGTH=289;; (*ITAG) Solyc07g062970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62819985-62823101 transcript_region:SL2.40ch07:62819985..62823101+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00009085g0002.1 protein AED:0.18 eAED:0.59 QI:0|-1|0|1|-1|1|1|0|66 NbS00027341g0004.1 protein AED:0.03 eAED:0.03 QI:284|1|1|1|1|1|3|577|96; (*GB) gi|213868279|gb|ACJ54186.1| (e_value=6e-60) SUMO [Nicotiana benthamiana];; (*SWP) sp|Q9FLP6|SUMO2_ARATH (e_value=2e-56) Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=1e-57) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc12g006010.1.1 (e_value=1e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:619162-621481 transcript_region:SL2.40ch12:619162..621481+ go_terms:GO:0005737 functional_description:"Small ubiquitin-related modifier (AHRD V1 ***- A6BMG7_COPCI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0005737 NbS00011798g0007.1 protein AED:0.11 eAED:0.11 QI:104|0.73|0.81|1|0.86|0.87|16|228|673; (*GB) gi|225431211|ref|XP_002272351.1| (e_value=0.0) PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q5TGY1|TMCO4_HUMAN (e_value=1e-43) Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1;; (*TAIR) AT4G36210.3 (e_value=0.0) | Symbols: | Protein of unknown function (DUF726) | chr4:17130354-17134302 FORWARD LENGTH=672;; (*ITAG) Solyc03g033640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00011798g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.42|0.85|0.5|0.57|7|0|872; (*GB) gi|357483657|ref|XP_003612115.1| (e_value=1e-77) Zinc finger CCCH domain-containing protein [Medicago truncatula];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=7e-64) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT2G18090.1 (e_value=7e-69) | Symbols: | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein | chr2:7864501-7867317 FORWARD LENGTH=824;; (*ITAG) Solyc03g033630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9500784-9507186 transcript_region:SL2.40ch03:9500784..9507186+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 *--- C3H44_ARATH); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00011798g0008.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0|0|2|0|80 NbC24219583g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|82400146|gb|ABB72812.1| (e_value=1e-61) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=6e-63) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=1e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=2e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00020365g0008.1 protein AED:0.04 eAED:0.04 QI:12|1|1|1|1|1|3|868|288; (*GB) gi|225453740|ref|XP_002269833.1| (e_value=2e-133) PREDICTED: F-box protein PP2-A13 [Vitis vinifera];; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=5e-123) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=4e-124) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc10g017960.1.1 (e_value=5e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6100868-6103519 transcript_region:SL2.40ch10:6100868..6103519- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00020365g0013.1 protein AED:0.25 eAED:0.35 QI:0|0|0|0.5|0|0.5|2|0|222; (*ITAG) Solyc05g050470.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:59772994-59774352 transcript_region:SL2.40ch05:59772994..59774352+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7MH12_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020365g0011.1 protein AED:0.17 eAED:0.17 QI:304|1|1|1|1|1|13|502|469; (*GB) gi|2598603|emb|CAA05329.1| (e_value=0.0) shaggy-like kinase 59 [Nicotiana tabacum];; (*SWP) sp|Q96287|KSG8_ARATH (e_value=0.0) Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3;; (*TAIR) AT4G00720.1 (e_value=0.0) | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like protein kinase 32 | chr4:294116-297002 REVERSE LENGTH=472;; (*ITAG) Solyc05g051050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60379685-60383579 transcript_region:SL2.40ch05:60379685..60383579- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** Q1AMT7_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00020365g0010.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.8|1|0.75|0.4|5|402|262; (*GB) gi|225453720|ref|XP_002271690.1| (e_value=5e-131) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=1e-105) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT4G11680.1 (e_value=1e-106) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr4:7053737-7055516 REVERSE LENGTH=390;; (*ITAG) Solyc05g051040.2.1 (e_value=1e-123) genomic_reference:SL2.40ch05 gene_region:60372696-60378405 transcript_region:SL2.40ch05:60372696..60378405- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00024875g0009.1 protein AED:0.09 eAED:0.09 QI:302|1|1|1|1|1|12|663|276; (*GB) gi|356557603|ref|XP_003547105.1| (e_value=4e-149) PREDICTED: zinc transporter ZTP29-like [Glycine max];; (*SWP) sp|Q940Q3|ZTP29_ARATH (e_value=1e-144) Zinc transporter ZTP29 OS=Arabidopsis thaliana GN=ZTP29 PE=2 SV=1;; (*TAIR) AT3G20870.1 (e_value=1e-145) | Symbols: ZTP29 | ZIP metal ion transporter family | chr3:7309499-7312476 REVERSE LENGTH=276;; (*ITAG) Solyc11g062020.1.1 (e_value=5e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45879662-45889979 transcript_region:SL2.40ch11:45879662..45889979+ go_terms:GO:0016020 functional_description:"Zinc transporter ZupT (AHRD V1 ***- B8L9G2_9GAMM); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00024875g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.93|0.93|1|0.93|0.93|16|285|690; (*GB) gi|18419973|ref|NP_568378.1| (e_value=0.0) outer envelope protein [Arabidopsis thaliana];; (*SWP) sp|Q9C5J8|OEP80_ARATH (e_value=0.0) Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1;; (*TAIR) AT5G19620.1 (e_value=0.0) | Symbols: EMB213, OEP80, ATOEP80, TOC75 | outer envelope protein of 80 kDa | chr5:6623323-6627641 FORWARD LENGTH=732;; (*ITAG) Solyc11g062070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46004281-46018463 transcript_region:SL2.40ch11:46004281..46018463- go_terms:GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- Q31PR1_SYNE7); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00024875g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|255544816|ref|XP_002513469.1| (e_value=9e-98) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q2VZH2|CCME_MAGSA (e_value=6e-27) Cytochrome c-type biogenesis protein CcmE OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ccmE PE=3 SV=1;; (*TAIR) AT3G51790.1 (e_value=3e-92) | Symbols: ATG1, TG1 | transmembrane protein G1P-related 1 | chr3:19209893-19210663 REVERSE LENGTH=256;; (*ITAG) Solyc09g005870.1.1 (e_value=2e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:606450-607295 transcript_region:SL2.40ch09:606450..607295+ go_terms:GO:0005515,GO:0003824 functional_description:"Cytochrome c-type biogenesis protein CcmE (AHRD V1 *-*- C7RMP3_ACCPU); contains Interpro domain(s) IPR004329 CcmE/CycJ protein "; GO:0005515,GO:0003824 NbS00045991g0006.1 protein AED:0.48 eAED:0.57 QI:418|0.2|0.16|0.66|0.8|0.83|6|149|47 NbS00045991g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.66|1|1|1|3|112|225; (*GB) gi|225435070|ref|XP_002284400.1| (e_value=2e-80) PREDICTED: transcription factor MYB59-like [Vitis vinifera];; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=5e-65) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G46130.1 (e_value=4e-66) | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain protein 48 | chr3:16945433-16946376 FORWARD LENGTH=256;; (*ITAG) Solyc11g073120.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53297151-53298385 transcript_region:SL2.40ch11:53297151..53298385+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00003769g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.12|0.11|0.77|0.25|0.11|9|0|461; (*GB) gi|359496542|ref|XP_003635262.1| (e_value=4e-124) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120-like [Vitis vinifera];; (*SWP) sp|O81906|B120_ARATH (e_value=3e-122) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=2e-123) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc10g005440.1.1 (e_value=5e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:319577-323262 transcript_region:SL2.40ch10:319577..323262- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00003769g0002.1 protein AED:0.08 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|353|1037; (*GB) gi|225457769|ref|XP_002278218.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SS83|PP220_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1;; (*TAIR) AT3G09040.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2761195-2764281 REVERSE LENGTH=1028;; (*ITAG) Solyc04g064750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55013770-55018537 transcript_region:SL2.40ch04:55013770..55018537- go_terms:GO:0006508 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00003769g0008.1 protein AED:0.35 eAED:0.44 QI:87|0|0|1|0|0|2|0|200; (*GB) gi|359497280|ref|XP_003635472.1| (e_value=4e-28) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Vitis vinifera];; (*SWP) sp|O64780|Y1614_ARATH (e_value=9e-23) G-type lectin S-receptor-like serine/threonine-protein kinase At1g61400 OS=Arabidopsis thaliana GN=At1g61400 PE=2 SV=4;; (*TAIR) AT1G61400.1 (e_value=6e-24) | Symbols: | S-locus lectin protein kinase family protein | chr1:22654638-22657774 REVERSE LENGTH=819;; (*ITAG) Solyc10g005440.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:319577-323262 transcript_region:SL2.40ch10:319577..323262- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00006918g0005.1 protein AED:0.11 eAED:0.11 QI:88|1|1|1|0|1|2|125|94; (*GB) gi|6690628|gb|AAF24224.1|AF173863_1 (e_value=6e-32) putative PLA2 [Nicotiana tabacum]; NbS00021017g0003.1 protein AED:0.00 eAED:0.00 QI:210|-1|0|1|-1|1|1|0|72; (*GB) gi|119866035|gb|ABM05487.1| (e_value=1e-36) Impa1 [Nicotiana benthamiana];; (*SWP) sp|O22478|IMA_SOLLC (e_value=8e-35) Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2;; (*TAIR) AT3G06720.2 (e_value=6e-26) | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532;; (*ITAG) Solyc06g009750.2.1 (e_value=5e-36) genomic_reference:SL2.40ch06 gene_region:3705492-3711608 transcript_region:SL2.40ch06:3705492..3711608+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR002652 Importin-alpha-like, importin-beta-binding region IPR000225 Armadillo IPR011989 Armadillo-like helical "; GO:0008320 NbS00021017g0005.1 protein AED:0.28 eAED:0.28 QI:185|0.8|0.90|1|0.8|0.72|11|512|381; (*GB) gi|356505618|ref|XP_003521587.1| (e_value=0.0) PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max];; (*SWP) sp|Q6TUG0|DJB11_RAT (e_value=5e-91) DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1;; (*TAIR) AT3G62600.1 (e_value=0.0) | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family protein | chr3:23151038-23153346 REVERSE LENGTH=346;; (*ITAG) Solyc01g079610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71223893-71229871 transcript_region:SL2.40ch01:71223893..71229871- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00001911g0014.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.5|1|1|0.66|6|0|513; (*GB) gi|225452863|ref|XP_002283766.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=1e-37) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc02g067210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31975416-31981655 transcript_region:SL2.40ch02:31975416..31981655- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00001911g0003.1 protein AED:0.08 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|184; (*GB) gi|225452867|ref|XP_002278569.1| (e_value=9e-61) PREDICTED: casparian strip membrane protein VIT_14s0108g01050 [Vitis vinifera];; (*SWP) sp|A7PMY7|CASP3_VITVI (e_value=3e-62) Casparian strip membrane protein VIT_14s0108g01050 OS=Vitis vinifera GN=VIT_14s0108g01050 PE=3 SV=1;; (*TAIR) AT5G15290.1 (e_value=4e-53) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:4967094-4967846 FORWARD LENGTH=187;; (*ITAG) Solyc02g067190.2.1 (e_value=4e-58) genomic_reference:SL2.40ch02 gene_region:31964035-31965710 transcript_region:SL2.40ch02:31964035..31965710+ functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_MAIZE); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00001911g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|503; (*GB) gi|296082942|emb|CBI22243.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXF2|PP385_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2;; (*TAIR) AT5G15300.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4968384-4970030 REVERSE LENGTH=548;; (*ITAG) Solyc02g088170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44903957-44905576 transcript_region:SL2.40ch02:44903957..44905576- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00001911g0010.1 protein AED:0.35 eAED:0.35 QI:19|0.88|0.8|1|1|1|10|0|481; (*GB) gi|334702291|gb|AEG89705.1| (e_value=0.0) polypyrimidine tract-binding protein 7 [Solanum tuberosum];; (*SWP) sp|Q9MAC5|PTBP1_ARATH (e_value=0.0) Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1;; (*TAIR) AT3G01150.1 (e_value=0.0) | Symbols: PTB, ATPTB1, PTB1 | polypyrimidine tract-binding protein 1 | chr3:51732-54344 FORWARD LENGTH=399;; (*ITAG) Solyc02g088110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44874698-44883084 transcript_region:SL2.40ch02:44874698..44883084- go_terms:GO:0005515,GO:0003730 functional_description:"Polypyrimidine tract-binding protein-like (AHRD V1 **** Q2XTB3_SOLTU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003730 NbS00001911g0005.1 protein AED:0.56 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc02g088130.1.1 (e_value=7e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:44892584-44892733 transcript_region:SL2.40ch02:44892584..44892733- functional_description:"Unknown Protein (AHRD V1)"; NbS00007054g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|295; (*GB) gi|2582822|emb|CAA71103.1| (e_value=0.0) CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum];; (*SWP) sp|Q9SGS4|CDSP_ARATH (e_value=4e-139) Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana GN=CDSP32 PE=1 SV=1;; (*TAIR) AT1G76080.1 (e_value=3e-140) | Symbols: ATCDSP32, CDSP32 | chloroplastic drought-induced stress protein of 32 kD | chr1:28548063-28549348 REVERSE LENGTH=302;; (*ITAG) Solyc04g081970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63392195-63394296 transcript_region:SL2.40ch04:63392195..63394296- go_terms:GO:0005515 functional_description:"Thioredoxin (AHRD V1 ***- D8U146_VOLCA); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0005515 NbS00007054g0006.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|122; (*ITAG) Solyc04g081960.1.1 (e_value=2e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:63389913-63390620 transcript_region:SL2.40ch04:63389913..63390620- functional_description:"Syringolide-induced protein 14-1-1 (Fragment) (AHRD V1 *-*- Q06H38_ARAHY)"; NbS00001809g0111.1 protein AED:0.07 eAED:0.07 QI:0|1|0.85|1|1|1|7|370|360 NbS00001809g0112.1 protein AED:0.25 eAED:0.25 QI:103|0.78|0.73|1|0.78|0.8|15|137|691 NbS00001809g0113.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|0.75|0.8|5|496|605 NbS00025847g0009.1 protein AED:0.09 eAED:0.09 QI:119|1|1|1|1|1|4|269|553; (*GB) gi|356528218|ref|XP_003532702.1| (e_value=0.0) PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase-like [Glycine max];; (*SWP) sp|O80505|ALG8_ARATH (e_value=0.0) Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana GN=At2g44660 PE=2 SV=3;; (*TAIR) AT2G44660.1 (e_value=0.0) | Symbols: | ALG6, ALG8 glycosyltransferase family | chr2:18420832-18422827 REVERSE LENGTH=506;; (*ITAG) Solyc01g088650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75173809-75178276 transcript_region:SL2.40ch01:75173809..75178276- go_terms:GO:0042283,GO:0000033 functional_description:"Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1 3-glucosyltransferase (AHRD V1 **** C5FMG1_NANOT); contains Interpro domain(s) IPR004856 Glycosyltransferase, ALG6/ALG8 "; GO:0042283,GO:0000033 NbS00052728g0001.1 protein AED:0.11 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255568331|ref|XP_002525140.1| (e_value=2e-41) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SLC4|ATL40_ARATH (e_value=7e-31) RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1;; (*TAIR) AT2G42350.1 (e_value=5e-32) | Symbols: | RING/U-box superfamily protein | chr2:17639245-17639898 FORWARD LENGTH=217;; (*ITAG) Solyc10g008080.1.1 (e_value=3e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:2226281-2226721 transcript_region:SL2.40ch10:2226281..2226721+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 ***- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00052728g0008.1 protein AED:0.17 eAED:0.28 QI:0|1|0.33|1|0|0|3|0|129; (*GB) gi|302143378|emb|CBI21939.3| (e_value=3e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|O08795|GLU2B_MOUSE (e_value=8e-19) Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1;; (*TAIR) AT2G42390.1 (e_value=1e-34) | Symbols: | protein kinase C substrate, heavy chain-related | chr2:17651381-17652509 REVERSE LENGTH=212;; (*ITAG) Solyc10g008100.2.1 (e_value=6e-64) genomic_reference:SL2.40ch10 gene_region:2229053-2232432 transcript_region:SL2.40ch10:2229053..2232432- functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B5X0Z0_SALSA)"; NbS00052728g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|261; (*GB) gi|356536045|ref|XP_003536551.1| (e_value=1e-68) PREDICTED: uncharacterized protein LOC100789480 [Glycine max];; (*TAIR) AT1G61790.1 (e_value=4e-63) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc10g008090.1.1 (e_value=6e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2227517-2228521 transcript_region:SL2.40ch10:2227517..2228521+ go_terms:GO:0015157 functional_description:"Oligosaccharide transporter (AHRD V1 **-* B4FSV8_MAIZE); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00005928g0003.1 protein AED:0.07 eAED:0.07 QI:465|0|0.5|1|0|0.5|2|650|195; (*GB) gi|224088615|ref|XP_002308497.1| (e_value=5e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g084430.1.1 (e_value=6e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63296174-63297477 transcript_region:SL2.40ch10:63296174..63297477- go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005928g0009.1 protein AED:0.11 eAED:0.11 QI:211|1|1|1|1|1|3|404|164; (*GB) gi|350535967|ref|NP_001233967.1| (e_value=7e-74) V-type proton ATPase 16 kDa proteolipid subunit [Solanum lycopersicum];; (*SWP) sp|O24011|VATL_SOLLC (e_value=2e-75) V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G34720.1 (e_value=4e-76) | Symbols: AVA-P1, VHA-C1, ATVHA-C1 | ATPase, F0/V0 complex, subunit C protein | chr4:16568223-16569165 REVERSE LENGTH=164;; (*ITAG) Solyc10g054590.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51141761-51147009 transcript_region:SL2.40ch10:51141761..51147009+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit (AHRD V1 **** VATL_SOLLC); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00005928g0002.1 protein AED:0.33 eAED:0.34 QI:249|0|0.5|1|0|0.5|2|0|157; (*GB) gi|297741511|emb|CBI32643.3| (e_value=6e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G58090.1 (e_value=2e-30) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:21512479-21513905 REVERSE LENGTH=271;; (*ITAG) Solyc10g084440.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63300525-63301013 transcript_region:SL2.40ch10:63300525..63301013+ functional_description:"AT hook motif family protein (AHRD V1 ***- B6THS5_MAIZE)"; NbS00007375g0013.1 protein AED:0.09 eAED:0.09 QI:0|1|0.90|1|1|0.90|11|502|531; (*GB) gi|365222934|gb|AEW69819.1| (e_value=0.0) Hop-interacting protein THI129 [Solanum lycopersicum];; (*SWP) sp|Q8L7U5|BSL1_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=2;; (*TAIR) AT4G03080.1 (e_value=0.0) | Symbols: BSL1 | BRI1 suppressor 1 (BSU1)-like 1 | chr4:1359935-1365166 REVERSE LENGTH=881;; (*ITAG) Solyc09g074320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61594259-61607705 transcript_region:SL2.40ch09:61594259..61607705+ go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I9Z0_POPTR); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00007375g0005.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|255540573|ref|XP_002511351.1| (e_value=9e-40) FKBP12-interacting protein of 37 kDa, putative [Ricinus communis];; (*SWP) sp|Q9ZSZ8|FIP37_ARATH (e_value=1e-36) FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1;; (*TAIR) AT3G54170.1 (e_value=9e-38) | Symbols: ATFIP37, FIP37 | FKBP12 interacting protein 37 | chr3:20056848-20059396 FORWARD LENGTH=330;; (*ITAG) Solyc03g112520.2.1 (e_value=2e-47) genomic_reference:SL2.40ch03 gene_region:56959636-56967859 transcript_region:SL2.40ch03:56959636..56967859- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing regulator WTAP (AHRD V1 *-*- B5X100_SALSA)"; GO:0005515 NbS00007375g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|225436845|ref|XP_002270749.1| (e_value=0.0) PREDICTED: tankyrase-2-like [Vitis vinifera];; (*SWP) sp|Q54KA7|SECG_DICDI (e_value=2e-30) Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=2e-21) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc09g074290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61580158-61581582 transcript_region:SL2.40ch09:61580158..61581582- go_terms:GO:0008134 functional_description:"Ankyrin repeat-containing protein (AHRD V1 **-- D3BAQ3_POLPA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00007375g0012.1 protein AED:0.18 eAED:0.18 QI:316|0.87|0.82|1|0.93|0.94|17|240|967; (*GB) gi|255559376|ref|XP_002520708.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03090.2 (e_value=0.0) | Symbols: | sequence-specific DNA binding;sequence-specific DNA binding transcription factors | chr4:1366495-1370910 REVERSE LENGTH=879;; (*ITAG) Solyc09g074330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61608057-61620043 transcript_region:SL2.40ch09:61608057..61620043- go_terms:GO:0006355 functional_description:"NDX1 homeobox protein (Fragment) (AHRD V1 ***- Q9ZRY1_SOYBN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00022557g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.44|0.4|0.9|0.55|0.5|10|0|547; (*GB) gi|255540423|ref|XP_002511276.1| (e_value=8e-138) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FMK7|BT1_ARATH (e_value=2e-122) BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1;; (*TAIR) AT5G63160.1 (e_value=1e-123) | Symbols: BT1 | BTB and TAZ domain protein 1 | chr5:25333485-25335399 REVERSE LENGTH=365;; (*ITAG) Solyc06g071820.2.1 (e_value=9e-162) genomic_reference:SL2.40ch06 gene_region:40629302-40632825 transcript_region:SL2.40ch06:40629302..40632825- go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type poz protein (AHRD V1 *--- Q179U2_AEDAE); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00004268g0004.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|1|1|4|0|204; (*GB) gi|224072049|ref|XP_002303615.1| (e_value=9e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SH59|RTNLC_ARATH (e_value=9e-30) Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1;; (*TAIR) AT1G64090.1 (e_value=7e-31) | Symbols: RTNLB3 | Reticulan like protein B3 | chr1:23789395-23790669 FORWARD LENGTH=255;; (*ITAG) Solyc09g055250.2.1 (e_value=8e-90) genomic_reference:SL2.40ch09 gene_region:33896657-33898961 transcript_region:SL2.40ch09:33896657..33898961- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00004268g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.87|0.77|1|0.37|0.33|9|0|534; (*GB) gi|297745732|emb|CBI15788.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G51340.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:20863594-20867171 FORWARD LENGTH=726;; (*ITAG) Solyc09g055340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:35349469-35390562 transcript_region:SL2.40ch09:35349469..35390562- functional_description:"Cohesin loading complex subunit SCC4 homolog (AHRD V1 *-*- SCC4_MOUSE)"; NbS00004268g0118.1 protein AED:0.08 eAED:0.08 QI:286|0.94|0.95|1|0.84|0.95|20|147|909 NbS00004268g0112.1 protein AED:0.18 eAED:0.18 QI:498|1|1|1|0|0.33|3|532|77 NbS00004268g0113.1 protein AED:0.27 eAED:0.64 QI:58|1|0|1|1|1|2|104|35 NbS00004268g0116.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|201 NbS00004268g0115.1 protein AED:0.32 eAED:0.32 QI:253|1|1|1|0.66|0.75|4|561|240 NbS00047175g0008.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0.3|1|0.22|0.3|10|0|736; (*GB) gi|359486287|ref|XP_002266693.2| (e_value=0.0) PREDICTED: phospholipase D delta-like [Vitis vinifera];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc10g024370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13627567-13633260 transcript_region:SL2.40ch10:13627567..13633260+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00047175g0009.1 protein AED:0.25 eAED:0.39 QI:0|0.25|0.2|1|0|0.2|5|0|231; (*GB) gi|2252632|gb|AAB65495.1| (e_value=2e-42) Barley Mlo protein isolog; 52077-56051 [Arabidopsis thaliana];; (*SWP) sp|O23693|MLO4_ARATH (e_value=6e-23) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=5e-24) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc10g044510.1.1 (e_value=3e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22128868-22135940 transcript_region:SL2.40ch10:22128868..22135940+ go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00003542g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|138; (*GB) gi|388521003|gb|AFK48563.1| (e_value=2e-39) unknown [Medicago truncatula];; (*TAIR) AT5G50760.1 (e_value=4e-16) | Symbols: | SAUR-like auxin-responsive protein family | chr5:20644780-20645331 FORWARD LENGTH=183;; (*ITAG) Solyc06g072650.1.1 (e_value=5e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:41196002-41196514 transcript_region:SL2.40ch06:41196002..41196514+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *--- Q2HTF2_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00003542g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|0|0.66|3|0|197; (*GB) gi|407940|gb|AAA81890.1| (e_value=2e-115) epoxide hydrolase [Solanum tuberosum];; (*SWP) sp|P34913|HYES_HUMAN (e_value=2e-27) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT4G02340.1 (e_value=2e-73) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc05g054350.2.1 (e_value=2e-116) genomic_reference:SL2.40ch05 gene_region:63421809-63424843 transcript_region:SL2.40ch05:63421809..63424843- go_terms:GO:0004301 functional_description:"Epoxide hydrolase (AHRD V1 **** Q41414_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00003542g0008.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|407942|gb|AAA81891.1| (e_value=1e-29) epoxide hydrolase [Solanum tuberosum];; (*TAIR) AT2G26740.1 (e_value=6e-20) | Symbols: ATSEH, SEH | soluble epoxide hydrolase | chr2:11393148-11394257 REVERSE LENGTH=321;; (*ITAG) Solyc05g054330.2.1 (e_value=9e-31) genomic_reference:SL2.40ch05 gene_region:63405116-63408195 transcript_region:SL2.40ch05:63405116..63408195- go_terms:GO:0004301 functional_description:"Epoxide hydrolase (AHRD V1 **** Q41415_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00025544g0006.1 protein AED:0.20 eAED:0.20 QI:138|0.8|0.72|1|0.9|0.90|11|0|1413; (*GB) gi|359484826|ref|XP_002276238.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera];; (*TAIR) AT5G58040.1 (e_value=5e-78) | Symbols: ATFIP1[V], FIPS5, ATFIPS5, FIP1[V] | homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196;; (*ITAG) Solyc07g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:247287-259892 transcript_region:SL2.40ch07:247287..259892- go_terms:GO:0042802,GO:0003723 functional_description:"Pre-mRNA polyadenylation factor fip1 (AHRD V1 *-*- B6JX34_SCHJY); contains Interpro domain(s) IPR007854 Fip1 "; GO:0042802,GO:0003723 NbS00025544g0004.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.6|1|1|5|0|78 NbS00023902g0016.1 protein AED:0.10 eAED:0.10 QI:474|0.86|0.93|1|0.8|0.81|16|441|514; (*GB) gi|224143875|ref|XP_002325105.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3V384|LACE1_MOUSE (e_value=3e-80) Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1;; (*TAIR) AT4G28070.2 (e_value=0.0) | Symbols: | AFG1-like ATPase family protein | chr4:13946009-13948462 FORWARD LENGTH=473;; (*ITAG) Solyc07g006160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:998031-1003161 transcript_region:SL2.40ch07:998031..1003161+ go_terms:GO:0016887 functional_description:"AFG1-family ATPase (AHRD V1 **** D1CU44_9RHIZ); contains Interpro domain(s) IPR005654 ATPase, AFG1-like "; GO:0016887 NbS00023902g0009.1 protein AED:0.26 eAED:0.28 QI:2|0.6|0.5|1|0.8|0.83|6|0|328; (*GB) gi|255569305|ref|XP_002525620.1| (e_value=6e-154) alpha-1,3-mannosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9H553|ALG2_HUMAN (e_value=4e-75) Alpha-1,3/1,6-mannosyltransferase ALG2 OS=Homo sapiens GN=ALG2 PE=2 SV=1;; (*TAIR) AT1G78800.1 (e_value=6e-141) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:29625859-29627941 REVERSE LENGTH=403;; (*ITAG) Solyc06g082490.2.1 (e_value=6e-174) genomic_reference:SL2.40ch06 gene_region:44575895-44579139 transcript_region:SL2.40ch06:44575895..44579139- go_terms:GO:0004378,GO:0033164 functional_description:"Alpha-1 3-mannosyltransferase ALG2 (AHRD V1 **-* D3TN82_GLOMM); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0004378,GO:0033164 NbS00023902g0014.1 protein AED:0.12 eAED:0.32 QI:16|0.5|0.28|0.85|0.5|0.57|7|0|318; (*GB) gi|193290720|gb|ACF17668.1| (e_value=3e-120) putative aminotransferase [Capsicum annuum];; (*SWP) sp|Q940M2|AGT21_ARATH (e_value=4e-112) Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1;; (*TAIR) AT4G39660.1 (e_value=3e-113) | Symbols: AGT2 | alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476;; (*ITAG) Solyc04g054310.2.1 (e_value=5e-123) genomic_reference:SL2.40ch04 gene_region:51438793-51444211 transcript_region:SL2.40ch04:51438793..51444211+ go_terms:GO:0008453 functional_description:"Alanine-glyoxylate aminotransferase (AHRD V1 **** D2KZ10_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0008453 NbS00023902g0015.1 protein AED:0.36 eAED:0.42 QI:0|0.5|0.6|1|0.5|0.8|5|0|196; (*GB) gi|211853238|emb|CAP16663.1| (e_value=6e-116) tetratricopeptide repeat protein [Solanum lycopersicum];; (*SWP) sp|Q99614|TTC1_HUMAN (e_value=4e-38) Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1;; (*TAIR) AT4G30480.2 (e_value=2e-93) | Symbols: TPR1, AtTPR1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:14897500-14898937 FORWARD LENGTH=277;; (*ITAG) Solyc07g006180.2.1 (e_value=5e-120) genomic_reference:SL2.40ch07 gene_region:1007742-1013158 transcript_region:SL2.40ch07:1007742..1013158- go_terms:GO:0051082,GO:0031072 functional_description:"Tetratricopeptide repeat protein 4 homolog (AHRD V1 *--- TTC4_DICDI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0051082,GO:0031072 NbS00029560g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|165; (*GB) gi|224147287|ref|XP_002336447.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33847.1 (e_value=1e-14) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14319280-14320522 REVERSE LENGTH=93;; (*ITAG) Solyc02g077730.2.1 (e_value=4e-23) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029560g0002.1 protein AED:0.36 eAED:0.36 QI:0|1|0.5|1|1|1|2|0|161; (*GB) gi|118481894|gb|ABK92882.1| (e_value=5e-66) unknown [Populus trichocarpa];; (*SWP) sp|O49453|Y4844_ARATH (e_value=1e-62) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT4G28440.1 (e_value=8e-64) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:14060054-14060970 FORWARD LENGTH=153;; (*ITAG) Solyc02g077740.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:37189312-37191744 transcript_region:SL2.40ch02:37189312..37191744- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00020718g0008.1 protein AED:0.02 eAED:0.04 QI:265|1|0.5|1|1|1|2|484|123; (*GB) gi|224104266|ref|XP_002313377.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g005570.2.1 (e_value=4e-13) genomic_reference:SL2.40ch09 gene_region:399157-400731 transcript_region:SL2.40ch09:399157..400731+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020718g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.77|1|1|1|9|526|388; (*GB) gi|1345975|sp|P48626.1|FAD3E_TOBAC (e_value=0.0) RecName: Full=Omega-3 fatty acid desaturase, endoplasmic reticulum;; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0.0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=3e-159) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00020718g0009.1 protein AED:0.24 eAED:0.24 QI:465|0.8|0.66|1|1|1|6|0|600; (*GB) gi|350536591|ref|NP_001233998.1| (e_value=0.0) oligopeptide transporter 1 [Solanum lycopersicum];; (*SWP) sp|P46032|PTR2_ARATH (e_value=0.0) Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1;; (*TAIR) AT2G02040.1 (e_value=0.0) | Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 | peptide transporter 2 | chr2:487542-489707 FORWARD LENGTH=585;; (*ITAG) Solyc02g021240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13003495-13017750 transcript_region:SL2.40ch02:13003495..13017750+ go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00013366g0004.1 protein AED:0.16 eAED:0.16 QI:430|0.88|1|1|0.77|0.7|10|429|246; (*GB) gi|4539543|emb|CAB39974.1| (e_value=4e-169) glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|P26520|G3PC_PETHY (e_value=2e-162) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1;; (*TAIR) AT1G13440.1 (e_value=4e-158) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=338;; (*ITAG) Solyc03g111010.2.1 (e_value=2e-168) genomic_reference:SL2.40ch03 gene_region:55761566-55765048 transcript_region:SL2.40ch03:55761566..55765048+ go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00032879g0012.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.66|0|0.66|3|0|302; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00032879g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|147767756|emb|CAN62985.1| (e_value=8e-32) hypothetical protein VITISV_027722 [Vitis vinifera];; (*TAIR) AT5G62150.1 (e_value=7e-31) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:24958325-24958633 FORWARD LENGTH=102;; (*ITAG) Solyc03g026360.1.1 (e_value=2e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8175837-8176193 transcript_region:SL2.40ch03:8175837..8176193+ go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7MLA8_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00032879g0006.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|225469318|ref|XP_002270367.1| (e_value=9e-37) PREDICTED: uncharacterized protein LOC100255607 [Vitis vinifera];; (*TAIR) AT5G62150.1 (e_value=3e-30) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:24958325-24958633 FORWARD LENGTH=102;; (*ITAG) Solyc03g026370.1.1 (e_value=7e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8185407-8185742 transcript_region:SL2.40ch03:8185407..8185742+ go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7MLA8_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00046220g0003.1 protein AED:0.22 eAED:0.22 QI:69|1|1|1|0.5|0.66|3|328|262; (*GB) gi|343887332|dbj|BAK61878.1| (e_value=4e-85) YGGT family protein [Citrus unshiu];; (*TAIR) AT5G21920.1 (e_value=1e-66) | Symbols: YLMG2, ATYLMG2 | YGGT family protein | chr5:7241350-7242765 REVERSE LENGTH=251;; (*ITAG) Solyc08g061630.2.1 (e_value=1e-137) genomic_reference:SL2.40ch08 gene_region:46479361-46482474 transcript_region:SL2.40ch08:46479361..46482474+ go_terms:GO:0016020 functional_description:"Conserved hypothetical membrane protein (AHRD V1 *--- Q7V1G3_PROMP); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00000482g0006.1 protein AED:0.17 eAED:0.23 QI:227|0.57|0.53|1|0.71|0.73|15|927|1105; (*GB) gi|147811069|emb|CAN70165.1| (e_value=0.0) hypothetical protein VITISV_024701 [Vitis vinifera];; (*SWP) sp|O81906|B120_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=0.0) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc02g079570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38670744-38674646 transcript_region:SL2.40ch02:38670744..38674646+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00005849g0007.1 protein AED:0.04 eAED:0.04 QI:29|1|0.33|1|0.5|0.66|3|0|156; (*GB) gi|224128117|ref|XP_002320248.1| (e_value=1e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02330.1 (e_value=8e-42) | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | chr1:462202-463521 REVERSE LENGTH=279;; (*ITAG) Solyc01g068580.2.1 (e_value=2e-74) genomic_reference:SL2.40ch01 gene_region:70178637-70187719 transcript_region:SL2.40ch01:70178637..70187719+ go_terms:GO:0005515 functional_description:"C9orf78 (AHRD V1 **-- C3KGZ0_ANOFI); contains Interpro domain(s) IPR010756 Hepatocellular carcinoma-associated antigen 59 "; GO:0005515 NbS00005849g0006.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|99; (*GB) gi|255556659|ref|XP_002519363.1| (e_value=1e-41) Protein C9orf78, putative [Ricinus communis];; (*TAIR) AT1G02330.1 (e_value=1e-41) | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | chr1:462202-463521 REVERSE LENGTH=279;; (*ITAG) Solyc01g068580.2.1 (e_value=2e-47) genomic_reference:SL2.40ch01 gene_region:70178637-70187719 transcript_region:SL2.40ch01:70178637..70187719+ go_terms:GO:0005515 functional_description:"C9orf78 (AHRD V1 **-- C3KGZ0_ANOFI); contains Interpro domain(s) IPR010756 Hepatocellular carcinoma-associated antigen 59 "; GO:0005515 NbS00017797g0007.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|0.5|0.66|3|0|103; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=6e-33) hypothetical protein [Nicotiana tabacum]; NbS00007789g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0.5|0.66|3|178|191; (*GB) gi|707001|gb|AAB33256.1| (e_value=3e-99) Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum];; (*SWP) sp|Q6BPT6|AIM32_DEBHA (e_value=1e-12) Altered inheritance of mitochondria protein 32 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM32 PE=3 SV=2;; (*TAIR) AT5G40510.1 (e_value=2e-43) | Symbols: | Sucrase/ferredoxin-like family protein | chr5:16229277-16230798 FORWARD LENGTH=333;; (*ITAG) Solyc02g093370.2.1 (e_value=8e-100) genomic_reference:SL2.40ch02 gene_region:48835447-48841769 transcript_region:SL2.40ch02:48835447..48841769+ functional_description:"Sucrose cleavage protein-like (AHRD V1 **-- Q9LT55_ARATH); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00007789g0007.1 protein AED:0.18 eAED:0.18 QI:229|1|0.5|1|0|0|2|0|653; (*GB) gi|359488803|ref|XP_002272525.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera];; (*SWP) sp|Q9SS97|PP205_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2;; (*TAIR) AT3G01580.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:223529-225511 REVERSE LENGTH=660;; (*ITAG) Solyc02g093380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48842100-48844049 transcript_region:SL2.40ch02:48842100..48844049- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00033508g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|225450557|ref|XP_002277523.1| (e_value=2e-93) PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=8e-20) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT3G12410.1 (e_value=2e-23) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc01g100680.1.1 (e_value=8e-111) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82418305-82418913 transcript_region:SL2.40ch01:82418305..82418913+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00033508g0007.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|266; (*ITAG) Solyc11g039800.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005277g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|491; (*GB) gi|356571641|ref|XP_003553984.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100819645 [Glycine max];; (*TAIR) AT3G19340.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3754) | chr3:6701387-6704071 REVERSE LENGTH=487;; (*ITAG) Solyc10g007530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1851352-1852833 transcript_region:SL2.40ch10:1851352..1852833+ functional_description:"Genomic DNA chromosome 3 P1 clone MLD14 (AHRD V1 ***- Q9LT83_ARATH)"; NbS00007507g0002.1 protein AED:0.04 eAED:0.04 QI:53|0|0|0.5|1|1|2|0|297; (*GB) gi|255551440|ref|XP_002516766.1| (e_value=5e-44) hypothetical protein RCOM_1729470 [Ricinus communis];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=3e-23) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G67000.1 (e_value=2e-24) | Symbols: | Protein kinase superfamily protein | chr1:25004217-25007604 REVERSE LENGTH=892;; (*ITAG) Solyc02g086290.1.1 (e_value=3e-120) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43569613-43570455 transcript_region:SL2.40ch02:43569613..43570455- functional_description:"Receptor serine/threonine kinase (AHRD V1 ***- Q9FF31_ARATH)"; NbS00007507g0016.1 protein AED:0.13 eAED:0.13 QI:33|1|0.75|1|1|1|4|0|423; (*GB) gi|255551442|ref|XP_002516767.1| (e_value=0.0) Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis];; (*SWP) sp|O33341|Y2859_MYCTU (e_value=2e-16) Putative glutamine amidotransferase Rv2859c OS=Mycobacterium tuberculosis GN=Rv2859c PE=1 SV=1;; (*TAIR) AT5G38200.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc02g086300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43573059-43575024 transcript_region:SL2.40ch02:43573059..43575024- go_terms:GO:0006541 functional_description:"Glutamine amidotransferase (AHRD V1 *-*- C6YZA6_9BACE); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00007507g0019.1 protein AED:0.28 eAED:0.28 QI:12|0.66|0.5|1|0.66|0.5|4|0|165; (*GB) gi|37625523|gb|AAQ96375.1| (e_value=6e-85) 60S ribosomal protein L13 [Solanum palustre];; (*SWP) sp|P41129|RL132_BRANA (e_value=3e-79) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.4 (e_value=3e-79) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=204;; (*ITAG) Solyc08g075700.2.1 (e_value=4e-87) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00007507g0017.1 protein AED:0.33 eAED:0.34 QI:267|0.5|0.4|1|0.75|0.8|5|0|786; (*GB) gi|255551438|ref|XP_002516765.1| (e_value=0.0) wall-associated kinase, putative [Ricinus communis];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=9e-160) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=7e-161) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc02g086270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43557735-43566755 transcript_region:SL2.40ch02:43557735..43566755- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007507g0024.1 protein AED:0.33 eAED:0.33 QI:206|0.8|0.90|1|0.7|0.81|11|64|434; (*GB) gi|225447975|ref|XP_002269064.1| (e_value=1e-161) PREDICTED: kinetochore protein Nuf2 [Vitis vinifera];; (*TAIR) AT1G61000.1 (e_value=1e-108) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). | chr1:22471096-22474046 REVERSE LENGTH=440;; (*ITAG) Solyc10g019040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:11226981-11232451 transcript_region:SL2.40ch10:11226981..11232451+ go_terms:GO:0000775 functional_description:"Kinetochore protein NUF2-like protein (AHRD V1 ***- D0N421_PHYIN); contains Interpro domain(s) IPR005549 Kinetochore protein Nuf2 "; GO:0000775 NbS00045636g0007.1 protein AED:0.20 eAED:0.20 QI:238|1|1|1|0.75|0.77|9|284|481; (*GB) gi|224130512|ref|XP_002320855.1| (e_value=3e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M158|STR4_ARATH (e_value=1e-138) Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2;; (*TAIR) AT4G01050.1 (e_value=9e-140) | Symbols: TROL | thylakoid rhodanese-like | chr4:455874-458175 FORWARD LENGTH=466;; (*ITAG) Solyc10g009570.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3694886-3699858 transcript_region:SL2.40ch10:3694886..3699858- go_terms:GO:0005515 functional_description:"Rhodanese-related sulfurtransferase (AHRD V1 *--- A4U0Q7_9PROT); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0005515 NbS00009846g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.83|1|0.8|0.83|6|134|414; (*GB) gi|166053040|emb|CAP69670.1| (e_value=0.0) vicilin [Solanum lycopersicum];; (*SWP) sp|Q9SPL5|AMP21_MACIN (e_value=2e-100) Vicilin-like antimicrobial peptides 2-1 OS=Macadamia integrifolia GN=AMP2-1 PE=2 SV=1;; (*TAIR) AT3G22640.1 (e_value=1e-70) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486;; (*ITAG) Solyc09g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63490155-63493319 transcript_region:SL2.40ch09:63490155..63493319- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00005737g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|0.5|1|1|4|185|79 NbS00005737g0001.1 protein AED:0.06 eAED:0.06 QI:194|0.88|1|1|1|1|10|188|550; (*GB) gi|225463067|ref|XP_002268993.1| (e_value=0.0) PREDICTED: NEDD8 ultimate buster 1 [Vitis vinifera];; (*SWP) sp|P54729|NUB1_MOUSE (e_value=3e-23) NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2;; (*TAIR) AT2G12550.1 (e_value=0.0) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr2:5114881-5118486 FORWARD LENGTH=562;; (*ITAG) Solyc07g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2106441-2112686 transcript_region:SL2.40ch07:2106441..2112686+ functional_description:"NEDD8 ultimate buster 1 (AHRD V1 **-- C0HB30_SALSA); contains Interpro domain(s) IPR009060 UBA-like "; NbS00020577g0003.1 protein AED:0.20 eAED:0.20 QI:161|0.8|0.83|1|0.8|0.83|6|248|183; (*GB) gi|225445565|ref|XP_002285328.1| (e_value=8e-60) PREDICTED: axial regulator YABBY 5 [Vitis vinifera];; (*SWP) sp|Q8GW46|YAB5_ARATH (e_value=6e-43) Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1;; (*TAIR) AT2G26580.2 (e_value=4e-44) | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164;; (*ITAG) Solyc12g009580.1.1 (e_value=3e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2837633-2843798 transcript_region:SL2.40ch12:2837633..2843798- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM7_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00045246g0006.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0.5|0.33|3|0|322; (*GB) gi|255543024|ref|XP_002512575.1| (e_value=3e-25) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT3G62200.1 (e_value=2e-25) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr3:23023437-23025671 REVERSE LENGTH=673;; (*ITAG) Solyc02g088870.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45385154-45387187 transcript_region:SL2.40ch02:45385154..45387187- functional_description:"LOC100005105 protein (Fragment) (AHRD V1 *-*- A4QNR9_DANRE); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00045246g0005.1 protein AED:0.37 eAED:0.54 QI:0|0|0|0.75|0.33|0.25|4|0|150 NbS00019439g0003.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|121; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=8e-13) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=7e-14) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=9e-13) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00019439g0005.1 protein AED:0.27 eAED:0.54 QI:0|0|0|1|0|0|3|0|108 NbS00026111g0004.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|0|0|5|0|345; (*GB) gi|13328|emb|CAA35256.1| (e_value=3e-62) mitochondrial cytochrome oxidase subunit II [Petunia x hybrida];; (*SWP) sp|P98012|COX2_BETVU (e_value=9e-56) Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1;; (*ITAG) ATMG00160.1 (e_value=8e-54) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbS00001885g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|1|0.75|0.6|5|341|687; (*GB) gi|225455531|ref|XP_002267632.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 [Vitis vinifera];; (*SWP) sp|Q9FG24|SRF2_ARATH (e_value=6e-52) Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1;; (*TAIR) AT5G51560.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20945807-20948613 FORWARD LENGTH=680;; (*ITAG) Solyc01g091230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76667116-76670365 transcript_region:SL2.40ch01:76667116..76670365+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001885g0008.1 protein AED:0.06 eAED:0.06 QI:77|1|0.5|1|1|1|2|0|221; (*GB) gi|225455533|ref|XP_002266318.1| (e_value=1e-85) PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera];; (*TAIR) AT5G62280.1 (e_value=4e-55) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc03g083500.2.1 (e_value=6e-134) genomic_reference:SL2.40ch03 gene_region:46973344-46974202 transcript_region:SL2.40ch03:46973344..46974202+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00030870g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.75|0.6|0.8|0.75|0.6|5|0|320; (*GB) gi|388513173|gb|AFK44648.1| (e_value=1e-148) unknown [Medicago truncatula];; (*SWP) sp|P34914|HYES_MOUSE (e_value=1e-38) Epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2;; (*TAIR) AT3G51000.1 (e_value=7e-67) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00030870g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.61|1|0.83|0.92|13|495|933; (*GB) gi|297742900|emb|CBI35691.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G11060.1 (e_value=0.0) | Symbols: | WAPL (Wings apart-like protein regulation of heterochromatin) protein | chr1:3684568-3689537 FORWARD LENGTH=930;; (*ITAG) Solyc02g078560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37801010-37811610 transcript_region:SL2.40ch02:37801010..37811610+ functional_description:"Wings apart-like CG3707-RB isoform B (Fragment) (AHRD V1 *-*- B5AID2_DROME)"; NbS00024293g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0.5|0.33|3|268|909; (*GB) gi|297823219|ref|XP_002879492.1| (e_value=0.0) hypothetical protein ARALYDRAFT_321151 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G74780.1 (e_value=0.0) | Symbols: | Nodulin-like / Major Facilitator Superfamily protein | chr1:28095916-28097912 FORWARD LENGTH=533;; (*ITAG) Solyc03g113330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57535014-57538613 transcript_region:SL2.40ch03:57535014..57538613- functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00024293g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|178; (*GB) gi|297734047|emb|CBI15294.3| (e_value=3e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G74780.1 (e_value=1e-68) | Symbols: | Nodulin-like / Major Facilitator Superfamily protein | chr1:28095916-28097912 FORWARD LENGTH=533;; (*ITAG) Solyc03g113340.2.1 (e_value=3e-99) genomic_reference:SL2.40ch03 gene_region:57539138-57542922 transcript_region:SL2.40ch03:57539138..57542922- functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00015294g0002.1 protein AED:0.24 eAED:0.24 QI:32|0.5|0.28|1|1|1|7|0|262; (*GB) gi|297740400|emb|CBI30582.3| (e_value=5e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02520.1 (e_value=8e-26) | Symbols: | CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). | chr5:561325-563840 FORWARD LENGTH=598;; (*ITAG) Solyc09g010550.2.1 (e_value=7e-61) genomic_reference:SL2.40ch09 gene_region:3916736-3919570 transcript_region:SL2.40ch09:3916736..3919570- functional_description:"Chromosome 14 open reading frame 106 isoform CRA_b (AHRD V1 *--- D3DSA7_HUMAN); contains Interpro domain(s) IPR015216 SANT associated "; NbS00022436g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|563; (*GB) gi|225460265|ref|XP_002278647.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O23266|PP308_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3;; (*TAIR) AT4G14050.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8103645-8105483 REVERSE LENGTH=612;; (*ITAG) Solyc09g092440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66880740-66882572 transcript_region:SL2.40ch09:66880740..66882572+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00022436g0006.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|63; (*GB) gi|298569863|gb|ADI87447.1| (e_value=1e-18) cembratrienol synthase 2b [Nicotiana sylvestris];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=1e-19) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*ITAG) Solyc06g060010.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:34336381-34341941 transcript_region:SL2.40ch06:34336381..34341941+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00022436g0016.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|953; (*GB) gi|296089594|emb|CBI39413.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc09g057680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45731275-45734629 transcript_region:SL2.40ch09:45731275..45734629+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00022436g0007.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|59; (*GB) gi|225470816|ref|XP_002264634.1| (e_value=3e-18) PREDICTED: wound-induced basic protein [Vitis vinifera];; (*SWP) sp|Q09020|PR4_PHAVU (e_value=5e-19) Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1;; (*TAIR) AT3G07230.1 (e_value=5e-18) | Symbols: | wound-responsive protein-related | chr3:2299920-2300183 FORWARD LENGTH=46;; (*ITAG) Solyc06g083340.2.1 (e_value=7e-22) genomic_reference:SL2.40ch06 gene_region:45068054-45069921 transcript_region:SL2.40ch06:45068054..45069921- functional_description:"Wound-induced basic protein (AHRD V1 ***- PR4_PHAVU); contains Interpro domain(s) IPR012643 Wound-inducible basic "; NbS00022436g0020.1 protein AED:0.20 eAED:0.18 QI:335|0.93|0.88|1|0.87|0.94|17|296|783; (*GB) gi|296089272|emb|CBI39044.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LK39|AAE16_ARATH (e_value=0.0) Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1;; (*TAIR) AT3G23790.1 (e_value=0.0) | Symbols: AAE16 | AMP-dependent synthetase and ligase family protein | chr3:8575268-8581001 FORWARD LENGTH=722;; (*ITAG) Solyc09g092450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66882726-66893693 transcript_region:SL2.40ch09:66882726..66893693- go_terms:GO:0016208 functional_description:"Long-chain-fatty-acid CoA ligase (AHRD V1 ***- Q9LK39_ARATH); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00022436g0019.1 protein AED:0.31 eAED:0.38 QI:46|0|0|1|0|0|2|0|135; (*GB) gi|343409098|gb|AEM23829.1| (e_value=1e-43) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=3e-36) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT4G15870.1 (e_value=3e-17) | Symbols: ATTS1, TS1 | terpene synthase 1 | chr4:9008372-9010947 REVERSE LENGTH=598;; (*ITAG) Solyc09g092470.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:66902842-66905702 transcript_region:SL2.40ch09:66902842..66905702- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00022436g0018.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0|0|2|0|95; (*GB) gi|350536595|ref|NP_001234766.1| (e_value=5e-25) caryophyllene/alpha-humulene synthase [Solanum lycopersicum];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=6e-24) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*ITAG) Solyc06g059930.2.1 (e_value=9e-28) genomic_reference:SL2.40ch06 gene_region:34213417-34254456 transcript_region:SL2.40ch06:34213417..34254456+ functional_description:"Sesquiterpene synthase 1 (AHRD V1 ***- Q9FQ27_SOLHA)"; NbS00022436g0017.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|348659094|gb|AEP82784.1| (e_value=5e-35) terpene synthase [Solanum lycopersicum];; (*SWP) sp|O64961|TPSGC_SOLLC (e_value=5e-35) Germacrene C synthase OS=Solanum lycopersicum GN=SSTLE1 PE=1 SV=1;; (*TAIR) AT3G14520.1 (e_value=3e-25) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4875868-4878243 REVERSE LENGTH=605;; (*ITAG) Solyc06g059910.2.1 (e_value=8e-39) genomic_reference:SL2.40ch06 gene_region:34233173-34254292 transcript_region:SL2.40ch06:34233173..34254292+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00040760g0010.1 protein AED:0.41 eAED:0.41 QI:0|1|0.66|1|1|1|3|0|126; (*GB) gi|77416979|gb|ABA81885.1| (e_value=1e-76) profilin-like [Solanum tuberosum];; (*SWP) sp|Q93YG7|PROF2_SOLLC (e_value=6e-75) Profilin-2 OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G19760.1 (e_value=3e-65) | Symbols: PFN1, PRF1 | profilin 1 | chr2:8517074-8518067 REVERSE LENGTH=131;; (*ITAG) Solyc11g070130.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51738809-51741342 transcript_region:SL2.40ch11:51738809..51741342+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q8VWR0_SOLLC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00040760g0009.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.25|1|0.66|0.75|4|297|113; (*GB) gi|357436345|ref|XP_003588448.1| (e_value=3e-45) Enod93 protein [Medicago truncatula];; (*SWP) sp|Q02921|NO93_SOYBN (e_value=9e-21) Early nodulin-93 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G25940.1 (e_value=9e-25) | Symbols: | early nodulin-related | chr5:9054252-9055151 REVERSE LENGTH=115;; (*ITAG) Solyc08g066160.2.1 (e_value=1e-64) genomic_reference:SL2.40ch08 gene_region:51771167-51777698 transcript_region:SL2.40ch08:51771167..51777698+ functional_description:"Enod93 protein (Fragment) (AHRD V1 ***- A9XNV4_9MYRT); contains Interpro domain(s) IPR005050 Early nodulin 93 ENOD93 protein "; NbS00046774g0003.1 protein AED:0.14 eAED:0.15 QI:0|0.75|0.4|1|1|1|5|0|312; (*GB) gi|224116578|ref|XP_002331931.1| (e_value=3e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT1G03610.1 (e_value=1e-72) | Symbols: | Protein of unknown function (DUF789) | chr1:901304-902672 FORWARD LENGTH=308;; (*ITAG) Solyc01g006080.1.1 (e_value=4e-83) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:747083-750281 transcript_region:SL2.40ch01:747083..750281- functional_description:"Protein involved in mRNA turnover and stability (ISS) (AHRD V1 ***- Q00X49_OSTTA); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00046774g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.2|1|0.75|1|5|99|115; (*GB) gi|169977312|emb|CAQ18903.1| (e_value=5e-37) chromomethylase [Nicotiana sylvestris];; (*SWP) sp|Q9AXT8|CMT1_MAIZE (e_value=1e-27) DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1;; (*TAIR) AT1G69770.1 (e_value=8e-27) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839;; (*ITAG) Solyc12g100330.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65430879-65437290 transcript_region:SL2.40ch12:65430879..65437290+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** B9GLJ3_POPTR); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00046774g0002.1 protein AED:0.16 eAED:0.19 QI:86|0|0.5|1|0|0.5|2|0|300; (*GB) gi|356576777|ref|XP_003556506.1| (e_value=8e-92) PREDICTED: probable rRNA-processing protein EBP2 homolog [Glycine max];; (*SWP) sp|Q9LUJ5|EBP2_ARATH (e_value=2e-89) Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1;; (*TAIR) AT3G22660.1 (e_value=2e-90) | Symbols: | rRNA processing protein-related | chr3:8016237-8017118 REVERSE LENGTH=293;; (*ITAG) Solyc01g006170.2.1 (e_value=5e-124) genomic_reference:SL2.40ch01 gene_region:809135-810275 transcript_region:SL2.40ch01:809135..810275- go_terms:GO:0005515 functional_description:"rRNA processing protein ebna1-binding protein-related (AHRD V1 *--* C4QG91_SCHMA); contains Interpro domain(s) IPR008610 Eukaryotic rRNA processing "; GO:0005515 NbS00010583g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|31711507|dbj|BAC77634.1| (e_value=2e-132) 24K germin like protein [Nicotiana tabacum];; (*SWP) sp|O04011|ABP20_PRUPE (e_value=2e-91) Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1;; (*TAIR) AT5G20630.1 (e_value=9e-88) | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211;; (*ITAG) Solyc07g041720.1.1 (e_value=3e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51367296-51367931 transcript_region:SL2.40ch07:51367296..51367931+ go_terms:GO:0050162 functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00000002g0003.1 protein AED:0.21 eAED:0.22 QI:1253|0.66|0.75|1|0.33|0.25|4|391|102; (*ITAG) Solyc01g073870.2.1 (e_value=9e-31) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00000002g0012.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|4|0|570; (*GB) gi|146395463|gb|ABQ28669.1| (e_value=0.0) beta-fructofuranosidase [Solanum lycopersicum];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00000592g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|100; (*GB) gi|15236542|ref|NP_194911.1| (e_value=1e-44) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G31830.1 (e_value=3e-47) | Symbols: | unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15400803-15401105 REVERSE LENGTH=100;; (*ITAG) Solyc08g006800.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1352124-1353633 transcript_region:SL2.40ch08:1352124..1353633+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005800g0002.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|255548249|ref|XP_002515181.1| (e_value=5e-33) protein transport protein sec23, putative [Ricinus communis];; (*TAIR) AT4G01810.1 (e_value=1e-30) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc09g055810.1.1 (e_value=8e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:40994970-40995209 transcript_region:SL2.40ch09:40994970..40995209- functional_description:"Unknown Protein (AHRD V1)"; NbS00005800g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.68|0.65|0.75|0.94|0.9|20|203|889; (*GB) gi|297739695|emb|CBI29877.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q10SX7|GT31_ORYSJ (e_value=1e-30) Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN=Os03g0107900 PE=2 SV=1;; (*TAIR) AT3G57630.1 (e_value=0.0) | Symbols: | exostosin family protein | chr3:21339543-21343080 REVERSE LENGTH=793;; (*ITAG) Solyc03g063750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33339545-33345614 transcript_region:SL2.40ch03:33339545..33345614+ go_terms:GO:0003824 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8J984_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00008680g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc04g054340.1.1 (e_value=2e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:51490617-51490868 transcript_region:SL2.40ch04:51490617..51490868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008680g0006.1 protein AED:0.30 eAED:0.35 QI:0|0.33|0.25|0.75|0.33|0.75|4|0|196; (*GB) gi|356567834|ref|XP_003552120.1| (e_value=6e-81) PREDICTED: uncharacterized protein LOC100791777 [Glycine max];; (*TAIR) AT2G22120.2 (e_value=1e-76) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363;; (*ITAG) Solyc04g054330.2.1 (e_value=3e-86) genomic_reference:SL2.40ch04 gene_region:51476048-51484873 transcript_region:SL2.40ch04:51476048..51484873+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00030243g0001.1 protein AED:0.08 eAED:0.08 QI:134|1|1|1|0.5|0.33|3|543|872; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-79) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=2e-74) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc03g005660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:469690-474293 transcript_region:SL2.40ch03:469690..474293+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00000898g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|26|545; (*GB) gi|225426304|ref|XP_002268042.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=2e-55) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc08g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62431860-62434624 transcript_region:SL2.40ch08:62431860..62434624- go_terms:GO:0004428 functional_description:"Phosphatidylinositol 3-and 4-kinase family (Fragment) (AHRD V1 *--* A6N0X2_ORYSI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00000898g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|225426306|ref|XP_002268138.1| (e_value=6e-98) PREDICTED: uncharacterized protein LOC100244412 [Vitis vinifera];; (*TAIR) AT4G23930.1 (e_value=4e-59) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:12436131-12436694 REVERSE LENGTH=187;; (*ITAG) Solyc08g082470.1.1 (e_value=4e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62430091-62430684 transcript_region:SL2.40ch08:62430091..62430684- functional_description:"Harpin-induced protein (AHRD V1 ***- B6SQ86_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00000898g0003.1 protein AED:0.36 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|356523549|ref|XP_003530400.1| (e_value=5e-84) PREDICTED: GDSL esterase/lipase At4g10955-like [Glycine max];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=2e-67) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT4G10955.2 (e_value=2e-68) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:6713778-6715372 REVERSE LENGTH=350;; (*ITAG) Solyc08g082450.2.1 (e_value=5e-120) genomic_reference:SL2.40ch08 gene_region:62421383-62426129 transcript_region:SL2.40ch08:62421383..62426129+ go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7LYU5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00000898g0008.1 protein AED:0.42 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|190; (*GB) gi|224058229|ref|XP_002299467.1| (e_value=2e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=4e-59) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT2G05260.2 (e_value=5e-64) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1918730-1919792 FORWARD LENGTH=294;; (*ITAG) Solyc08g082450.2.1 (e_value=4e-98) genomic_reference:SL2.40ch08 gene_region:62421383-62426129 transcript_region:SL2.40ch08:62421383..62426129+ go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7LYU5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00029765g0014.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.42|1|0.16|0.14|7|0|808; (*GB) gi|359484155|ref|XP_002272509.2| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Vitis vinifera];; (*SWP) sp|O81905|SD18_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=0.0) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc05g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2684709-2689587 transcript_region:SL2.40ch05:2684709..2689587- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00029765g0015.1 protein AED:0.18 eAED:0.18 QI:219|0.94|0.83|1|0.94|0.88|18|0|1015; (*GB) gi|225462238|ref|XP_002263178.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2;; (*TAIR) AT1G79560.1 (e_value=0.0) | Symbols: EMB156, EMB36, EMB1047, FTSH12 | FTSH protease 12 | chr1:29926976-29932308 FORWARD LENGTH=1008;; (*ITAG) Solyc02g079000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38187088-38202855 transcript_region:SL2.40ch02:38187088..38202855+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00029765g0013.1 protein AED:0.43 eAED:0.43 QI:0|0.37|0.22|0.66|0.75|0.77|9|0|228; (*GB) gi|227462435|gb|ABI49160.2| (e_value=1e-66) SM10-1 [Nicotiana tabacum];; (*SWP) sp|Q1RMX9|DCNL5_BOVIN (e_value=4e-35) DCN1-like protein 5 OS=Bos taurus GN=DCUN1D5 PE=2 SV=1;; (*TAIR) AT3G12760.1 (e_value=1e-62) | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250;; (*ITAG) Solyc12g017310.1.1 (e_value=7e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6539479-6542269 transcript_region:SL2.40ch12:6539479..6542269- functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; NbS00022749g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|359496061|ref|XP_003635142.1| (e_value=3e-59) PREDICTED: uncharacterized protein LOC100244391 [Vitis vinifera];; (*SWP) sp|O82155|DOF17_ARATH (e_value=7e-30) Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1;; (*TAIR) AT1G51700.1 (e_value=5e-31) | Symbols: ADOF1, DOF1 | DOF zinc finger protein 1 | chr1:19174266-19174850 FORWARD LENGTH=194;; (*ITAG) Solyc02g090310.1.1 (e_value=1e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46465985-46466767 transcript_region:SL2.40ch02:46465985..46466767- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 4 (AHRD V1 *-*- A5HWF3_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00001888g0019.1 protein AED:0.13 eAED:0.13 QI:0|0.37|0.11|1|0.37|0.22|9|0|918; (*GB) gi|291278198|gb|ADD91580.1| (e_value=0.0) calcium ATPase [Nicotiana benthamiana];; (*SWP) sp|Q9M2L4|ACA11_ARATH (e_value=0.0) Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=2 SV=1;; (*TAIR) AT3G57330.1 (e_value=0.0) | Symbols: ACA11 | autoinhibited Ca2+-ATPase 11 | chr3:21211655-21216375 REVERSE LENGTH=1025;; (*ITAG) Solyc10g079300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60174290-60177538 transcript_region:SL2.40ch10:60174290..60177538- go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00001888g0002.1 protein AED:0.18 eAED:0.18 QI:163|1|1|1|0.85|0.75|8|760|393; (*GB) gi|133711814|gb|ABO36632.1| (e_value=0.0) putative recA protein [Solanum lycopersicum];; (*SWP) sp|Q8RY99|RECAM_ARATH (e_value=9e-147) DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana GN=At3g10140 PE=2 SV=1;; (*TAIR) AT3G10140.1 (e_value=7e-148) | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-3137069 FORWARD LENGTH=389;; (*ITAG) Solyc10g079250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60144419-60149387 transcript_region:SL2.40ch10:60144419..60149387- go_terms:GO:0006259,GO:0017111,GO:0006281 functional_description:"Protein recA (AHRD V1 ***- Q0F3T6_9PROT); contains Interpro domain(s) IPR013765 RecA IPR003593 ATPase, AAA+ type, core "; GO:0006259,GO:0017111,GO:0006281 NbS00001888g0003.1 protein AED:0.08 eAED:0.08 QI:194|1|0.66|1|0.8|0.66|6|0|431; (*GB) gi|350537693|ref|NP_001233793.1| (e_value=3e-178) calmodulin binding protein SUN-like [Solanum lycopersicum];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=9e-11) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT5G03960.1 (e_value=6e-49) | Symbols: IQD12 | IQ-domain 12 | chr5:1068333-1069683 REVERSE LENGTH=403;; (*ITAG) Solyc10g079240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60140568-60142797 transcript_region:SL2.40ch10:60140568..60142797+ functional_description:"Calmodulin binding protein (AHRD V1 *--- B6T589_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00001888g0016.1 protein AED:0.34 eAED:0.34 QI:237|1|1|1|0.75|0.6|5|379|310; (*GB) gi|224090051|ref|XP_002308922.1| (e_value=6e-175) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=5e-175) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=4e-176) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00001888g0017.1 protein AED:0.39 eAED:0.52 QI:0|0.75|0.4|1|0.25|0.4|5|0|145; (*GB) gi|133711807|gb|ABO36625.1| (e_value=4e-61) hypothetical protein LYC_68t000010 [Solanum lycopersicum];; (*TAIR) AT3G57280.1 (e_value=1e-52) | Symbols: | Transmembrane proteins 14C | chr3:21193960-21195547 FORWARD LENGTH=226;; (*ITAG) Solyc10g079260.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60150359-60154140 transcript_region:SL2.40ch10:60150359..60154140+ go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 *-*- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00012650g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|4106857|gb|AAD03046.1| (e_value=1e-29) cytochrome c biogenesis protein [Solanum tuberosum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=3e-27) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=2e-30) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00012650g0016.1 protein AED:0.02 eAED:0.02 QI:164|1|0.75|1|0|0|4|0|295; (*GB) gi|297744162|emb|CBI37132.3| (e_value=4e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84TE6|NAC22_ARATH (e_value=2e-65) NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2;; (*TAIR) AT4G28530.1 (e_value=8e-91) | Symbols: anac074, NAC074 | NAC domain containing protein 74 | chr4:14090725-14094603 REVERSE LENGTH=352;; (*ITAG) Solyc06g008360.2.1 (e_value=2e-153) genomic_reference:SL2.40ch06 gene_region:2253973-2260316 transcript_region:SL2.40ch06:2253973..2260316+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRP6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012650g0020.1 protein AED:0.04 eAED:0.04 QI:411|0.87|1|1|0.5|0.66|9|282|760; (*GB) gi|359480020|ref|XP_002272766.2| (e_value=0.0) PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=4e-145) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G08620.2 (e_value=4e-176) | Symbols: PKDM7D | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:2737554-2743370 FORWARD LENGTH=1209;; (*ITAG) Solyc06g008490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2382957-2390838 transcript_region:SL2.40ch06:2382957..2390838+ go_terms:GO:0034647,GO:0034648 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--* KDM5B_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0034647,GO:0034648 NbS00012650g0019.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.33|0.83|1|1|6|0|434; (*GB) gi|81238594|gb|ABB60055.1| (e_value=4e-151) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|P07728|GLUA1_ORYSJ (e_value=1e-99) Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2;; (*TAIR) AT5G44120.3 (e_value=4e-93) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=7e-175) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00012650g0018.1 protein AED:0.02 eAED:0.10 QI:69|0|0|1|0|0|2|0|284; (*GB) gi|255582499|ref|XP_002532035.1| (e_value=8e-38) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q7XI08|XB34_ORYSJ (e_value=4e-22) Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1;; (*TAIR) AT3G23280.2 (e_value=2e-19) | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis thaliana | chr3:8321588-8324109 FORWARD LENGTH=438;; (*ITAG) Solyc06g008500.2.1 (e_value=1e-123) genomic_reference:SL2.40ch06 gene_region:2391924-2399431 transcript_region:SL2.40ch06:2391924..2399431- go_terms:GO:0008270 functional_description:"Ankyrin repeat-containing protein (AHRD V1 *-*- D2Y4N3_TOBAC); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00012650g0017.1 protein AED:0.13 eAED:0.56 QI:9|0|0|1|0|0|2|0|109; (*GB) gi|224082802|ref|XP_002306845.1| (e_value=3e-19) high affinity inorganic phosphate transporter [Populus trichocarpa];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=4e-19) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=3e-20) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc09g066410.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60426564-60428153 transcript_region:SL2.40ch09:60426564..60428153+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00057522g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|3|0|155; (*GB) gi|147799847|emb|CAN66059.1| (e_value=6e-43) hypothetical protein VITISV_017037 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=1e-30) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=8e-32) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00057522g0005.1 protein AED:0.39 eAED:0.82 QI:0|0|0|1|0|0|2|0|100 NbS00027133g0005.1 protein AED:0.11 eAED:0.11 QI:84|0.8|0.66|1|0.6|0.5|6|120|402; (*GB) gi|82568702|dbj|BAE48664.1| (e_value=0.0) Pectate lyase [Prunus mume];; (*SWP) sp|Q9C5M8|PLY18_ARATH (e_value=0.0) Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2;; (*TAIR) AT4G24780.2 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12770631-12772227 REVERSE LENGTH=408;; (*ITAG) Solyc03g111690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56396337-56398488 transcript_region:SL2.40ch03:56396337..56398488+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00028168g0005.1 protein AED:0.08 eAED:0.08 QI:146|1|0.87|1|0.57|0.5|8|105|520; (*GB) gi|359488210|ref|XP_003633720.1| (e_value=0.0) PREDICTED: histone deacetylase 19-like [Vitis vinifera];; (*SWP) sp|O22446|HDA19_ARATH (e_value=0.0) Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2;; (*TAIR) AT4G38130.1 (e_value=0.0) | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 | histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501;; (*ITAG) Solyc09g091440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66071268-66077194 transcript_region:SL2.40ch09:66071268..66077194- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9MZ37_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00061271g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|318; (*GB) gi|374341580|gb|AEZ35207.1| (e_value=0.0) ntrax [Nicotiana tabacum];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=7e-73) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=1e-75) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc09g008250.2.1 (e_value=7e-124) genomic_reference:SL2.40ch09 gene_region:1718596-1720352 transcript_region:SL2.40ch09:1718596..1720352- go_terms:GO:0003700,GO:0005516 functional_description:"MYB transcription factor (AHRD V1 *--* Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0005516 NbS00016195g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|263; (*GB) gi|147792212|emb|CAN72981.1| (e_value=3e-79) hypothetical protein VITISV_009032 [Vitis vinifera];; (*SWP) sp|Q8LC79|GAT18_ARATH (e_value=1e-48) GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2;; (*TAIR) AT3G50870.1 (e_value=1e-49) | Symbols: MNP, HAN, GATA18 | GATA type zinc finger transcription factor family protein | chr3:18911112-18912369 FORWARD LENGTH=295;; (*ITAG) Solyc02g085190.1.1 (e_value=4e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42744052-42744903 transcript_region:SL2.40ch02:42744052..42744903- go_terms:GO:0030374 functional_description:"GATA transcription factor 19 (AHRD V1 *-** B6TS85_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0030374 NbS00016184g0012.1 protein AED:0.11 eAED:0.11 QI:469|1|1|1|0.66|0.75|4|1312|76; (*GB) gi|224126017|ref|XP_002319735.1| (e_value=4e-22) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9CAZ0|SKI24_ARATH (e_value=5e-20) F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2;; (*TAIR) AT1G08710.1 (e_value=2e-21) | Symbols: | F-box family protein | chr1:2771720-2773250 FORWARD LENGTH=274;; (*ITAG) Solyc10g085660.1.1 (e_value=7e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64092581-64093954 transcript_region:SL2.40ch10:64092581..64093954- functional_description:"F-box protein SKIP24 (AHRD V1 ***- SKI24_ARATH)"; NbS00016184g0011.1 protein AED:0.30 eAED:0.30 QI:486|0.6|0.5|1|0.6|0.66|6|82|230; (*GB) gi|356542830|ref|XP_003539868.1| (e_value=2e-66) PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Glycine max];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=4e-58) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT1G61900.2 (e_value=2e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:22882561-22884722 REVERSE LENGTH=413;; (*ITAG) Solyc07g052360.1.1 (e_value=8e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58197046-58200556 transcript_region:SL2.40ch07:58197046..58200556+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00016184g0013.1 protein AED:0.82 eAED:0.83 QI:0|0|0|0.5|0|0|2|0|60 NbS00051935g0010.1 protein AED:0.02 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|471; (*GB) gi|296082991|emb|CBI22292.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g088670.1.1 (e_value=1e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45254686-45256068 transcript_region:SL2.40ch02:45254686..45256068- go_terms:GO:0003700 functional_description:"Zinc-finger protein 1 (AHRD V1 *-*- B6TS25_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00051935g0007.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|3|0|620; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q9LIA8|UGDH1_ARATH (e_value=0.0) Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00051935g0004.1 protein AED:0.20 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|147819295|emb|CAN68962.1| (e_value=7e-136) hypothetical protein VITISV_019277 [Vitis vinifera];; (*SWP) sp|Q9FLZ9|PP405_ARATH (e_value=1e-107) Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1;; (*TAIR) AT5G39350.1 (e_value=9e-109) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15750929-15752962 FORWARD LENGTH=677;; (*ITAG) Solyc02g088650.1.1 (e_value=9e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45249368-45251410 transcript_region:SL2.40ch02:45249368..45251410- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00051935g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.71|1|0.83|0.71|7|117|572; (*GB) gi|28628063|gb|AAO25511.1| (e_value=0.0) 4-coumarate:CoA ligase-like [Nicotiana sylvestris];; (*SWP) sp|Q9LQ12|4CLL1_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1;; (*TAIR) AT1G62940.1 (e_value=0.0) | Symbols: ACOS5 | acyl-CoA synthetase 5 | chr1:23310554-23312747 FORWARD LENGTH=542;; (*ITAG) Solyc02g088710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45273943-45276484 transcript_region:SL2.40ch02:45273943..45276484+ go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase-like (AHRD V1 **** Q84K86_NICSY); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00051935g0016.1 protein AED:0.22 eAED:0.22 QI:174|1|1|1|1|1|9|12|529; (*GB) gi|82621176|gb|ABB86276.1| (e_value=0.0) mitochondrial processing peptidase-like [Solanum tuberosum];; (*SWP) sp|Q42290|MPPB_ARATH (e_value=0.0) Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2;; (*TAIR) AT3G02090.1 (e_value=0.0) | Symbols: MPPBETA | Insulinase (Peptidase family M16) protein | chr3:365624-368526 FORWARD LENGTH=531;; (*ITAG) Solyc02g088700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45268178-45273518 transcript_region:SL2.40ch02:45268178..45273518+ go_terms:GO:0032403 functional_description:"Mitochondrial processing peptidase beta subunit (AHRD V1 ***- Q9AXQ2_CUCME); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0032403 NbS00028047g0003.1 protein AED:0.08 eAED:0.08 QI:290|1|1|1|1|1|5|279|242; (*GB) gi|30580328|sp|O24151.1|CAMT4_TOBAC (e_value=2e-178) RecName: Full=Caffeoyl-CoA O-methyltransferase 4; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase 4; Short=CCoAMT-4; Short=CCoAOMT-4;; (*SWP) sp|O24151|CAMT4_TOBAC (e_value=7e-180) Caffeoyl-CoA O-methyltransferase 4 OS=Nicotiana tabacum GN=CCOAOMT4 PE=2 SV=1;; (*TAIR) AT4G34050.1 (e_value=4e-160) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc02g093270.2.1 (e_value=4e-177) genomic_reference:SL2.40ch02 gene_region:48756122-48757525 transcript_region:SL2.40ch02:48756122..48757525- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A8IFQ7_SOLLC); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00052219g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|90970946|gb|ABE02823.1| (e_value=1e-30) GRAS1 [Nicotiana tabacum];; (*ITAG) Solyc01g100200.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:82020197-82022661 transcript_region:SL2.40ch01:82020197..82022661- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GJL6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbC26187501g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|0.4|0.66|6|0|221; (*GB) gi|297746144|emb|CBI16200.3| (e_value=2e-72) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LQQ2|RA51D_ARATH (e_value=2e-65) DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana GN=RAD51D PE=2 SV=2;; (*TAIR) AT1G07745.1 (e_value=1e-66) | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D | chr1:2400797-2402842 REVERSE LENGTH=322;; (*ITAG) Solyc11g073220.1.1 (e_value=2e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53338301-53343617 transcript_region:SL2.40ch11:53338301..53343617+ go_terms:GO:0006259 functional_description:"Rad51 DNA recombination/repair protein (AHRD V1 **-- B7GAG1_PHATR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0006259 NbS00039543g0004.1 protein AED:0.40 eAED:0.51 QI:0|0|0|1|1|1|2|0|122; (*GB) gi|225435780|ref|XP_002285740.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100260500 [Vitis vinifera];; (*ITAG) Solyc01g005530.2.1 (e_value=3e-44) genomic_reference:SL2.40ch01 gene_region:354484-355704 transcript_region:SL2.40ch01:354484..355704- functional_description:"Genomic DNA chromosome 3 P1 clone MRP15 (AHRD V1 ***- Q9LJE3_ARATH)"; NbS00039543g0002.1 protein AED:0.04 eAED:0.80 QI:0|-1|0|1|-1|1|1|0|817; (*GB) gi|225435788|ref|XP_002283740.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=4e-85) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G04220.1 (e_value=0.0) | Symbols: AtRLP46, RLP46 | receptor like protein 46 | chr4:2033427-2035946 FORWARD LENGTH=811;; (*ITAG) Solyc06g008300.2.1 (e_value=8e-98) genomic_reference:SL2.40ch06 gene_region:2161344-2164746 transcript_region:SL2.40ch06:2161344..2164746- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00022873g0004.1 protein AED:0.20 eAED:0.20 QI:177|1|0.88|1|1|1|9|0|312; (*GB) gi|255551408|ref|XP_002516750.1| (e_value=0.0) chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative [Ricinus communis];; (*SWP) sp|P80317|TCPZ_MOUSE (e_value=2e-135) T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3;; (*TAIR) AT3G02530.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00025465g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.78|0.75|1|0.63|0.8|20|410|697; (*GB) gi|296084840|emb|CBI27722.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G23490.1 (e_value=4e-179) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919831-7926499 FORWARD LENGTH=729;; (*ITAG) Solyc02g063050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29660810-29673796 transcript_region:SL2.40ch02:29660810..29673796+ functional_description:"Os05g0100900 protein (Fragment) (AHRD V1 *-*- Q0DLI2_ORYSJ)"; NbS00025465g0204.1 protein AED:0.39 eAED:0.71 QI:0|0|0|1|1|1|3|0|107 NbS00025465g0203.1 protein AED:0.46 eAED:0.90 QI:62|0|0.5|1|0|0.5|2|0|113 NbS00025465g0215.1 protein AED:0.08 eAED:0.08 QI:99|1|1|1|1|0.85|7|376|504 NbS00004570g0004.1 protein AED:0.30 eAED:0.32 QI:0|1|0|1|1|1|2|0|296; (*GB) gi|317106771|dbj|BAJ53263.1| (e_value=3e-59) JMS10C05.6 [Jatropha curcas];; (*TAIR) AT2G41870.1 (e_value=2e-41) | Symbols: | Remorin family protein | chr2:17471119-17472519 REVERSE LENGTH=274;; (*ITAG) Solyc04g015520.2.1 (e_value=1e-49) genomic_reference:SL2.40ch04 gene_region:5728590-5731134 transcript_region:SL2.40ch04:5728590..5731134+ go_terms:GO:0003677 functional_description:"DNA binding protein (AHRD V1 **** B6TND2_MAIZE); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00006808g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|189; (*GB) gi|71040671|gb|AAZ20284.1| (e_value=8e-75) calcium-binding pollen allergen [Arachis hypogaea];; (*SWP) sp|Q9FYK2|CML25_ARATH (e_value=5e-64) Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=4e-65) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc04g008000.2.1 (e_value=2e-93) genomic_reference:SL2.40ch04 gene_region:1652161-1653061 transcript_region:SL2.40ch04:1652161..1653061- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D9J0A7_9ROSI); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00006808g0005.1 protein AED:0.23 eAED:0.23 QI:224|0.94|0.94|1|0.72|0.78|19|1158|355; (*GB) gi|356524533|ref|XP_003530883.1| (e_value=0.0) PREDICTED: protein VAC14 homolog [Glycine max];; (*SWP) sp|Q5ZIW5|VAC14_CHICK (e_value=2e-96) Protein VAC14 homolog OS=Gallus gallus GN=VAC14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc04g008010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1656495-1673137 transcript_region:SL2.40ch04:1656495..1673137- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00030589g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|554; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=2e-20) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G19900.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:6907038-6908684 REVERSE LENGTH=548;; (*ITAG) Solyc04g081140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62764221-62765882 transcript_region:SL2.40ch04:62764221..62765882+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00030589g0008.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0.2|0|6|0|818; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=8e-14) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G75620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00060876g0001.1 protein AED:0.13 eAED:0.13 QI:323|1|1|1|0.5|0.33|3|286|490; (*GB) gi|359491711|ref|XP_002284930.2| (e_value=0.0) PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase isoform 1 [Vitis vinifera];; (*SWP) sp|Q3EAR7|GLYT2_ARATH (e_value=1e-19) Probable glycosyltransferase At3g42180 OS=Arabidopsis thaliana GN=At3g42180 PE=2 SV=2;; (*TAIR) AT1G74680.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:28059528-28060984 FORWARD LENGTH=461;; (*ITAG) Solyc03g116040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59616745-59620511 transcript_region:SL2.40ch03:59616745..59620511- go_terms:GO:0003824 functional_description:"Exostosin family-like protein (AHRD V1 **-- Q6Z527_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00001359g0003.1 protein AED:0.46 eAED:0.46 QI:0|0.5|0|0.66|1|1|3|0|63; (*ITAG) Solyc12g044220.1.1 (e_value=9e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44542863-44552185 transcript_region:SL2.40ch12:44542863..44552185- go_terms:GO:0007154 functional_description:"AT1G15240 (Fragment) (AHRD V1 *-*- Q6DT71_ARALP); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00060424g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.75|1|1|4|0|235; (*GB) gi|350539451|ref|NP_001234394.1| (e_value=6e-120) phosphoenolpyruvate carboxylase kinase [Solanum lycopersicum];; (*SWP) sp|Q93VK0|PPCK2_ARATH (e_value=3e-76) Phosphoenolpyruvate carboxylase kinase 2 OS=Arabidopsis thaliana GN=PPCK2 PE=1 SV=2;; (*TAIR) AT3G04530.1 (e_value=2e-77) | Symbols: PPCK2, PEPCK2, ATPPCK2 | phosphoenolpyruvate carboxylase kinase 2 | chr3:1221546-1222456 FORWARD LENGTH=278;; (*ITAG) Solyc04g009900.2.1 (e_value=1e-122) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00030814g0003.1 protein AED:0.34 eAED:0.34 QI:204|1|1|1|0.25|0.55|9|302|202; (*GB) gi|4096662|gb|AAD10389.1| (e_value=1e-143) Rab1-like small GTP-binding protein [Petunia x hybrida];; (*SWP) sp|Q9ZRE2|RABD1_ARATH (e_value=1e-125) Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1;; (*TAIR) AT3G11730.1 (e_value=1e-126) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205;; (*ITAG) Solyc01g103370.2.1 (e_value=5e-145) genomic_reference:SL2.40ch01 gene_region:83750652-83755639 transcript_region:SL2.40ch01:83750652..83755639+ go_terms:GO:0007264,GO:0015031,GO:0005525 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525 NbS00048430g0004.1 protein AED:0.47 eAED:0.47 QI:0|0.33|0.28|0.42|0.83|1|7|260|352; (*GB) gi|296088516|emb|CBI37507.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8DLF8|MNMG_THEEB (e_value=1e-137) tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Thermosynechococcus elongatus (strain BP-1) GN=mnmG PE=3 SV=1;; (*TAIR) AT2G13440.1 (e_value=0.0) | Symbols: | glucose-inhibited division family A protein | chr2:5593270-5598296 REVERSE LENGTH=723;; (*ITAG) Solyc01g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69824288-69836410 transcript_region:SL2.40ch01:69824288..69836410- go_terms:GO:0002098,GO:0008033 functional_description:"tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG (AHRD V1 ***- B4VZ14_9CYAN); contains Interpro domain(s) IPR004416 Glucose-inhibited division protein A "; GO:0002098,GO:0008033 NbS00048430g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|0.5|1|1|2|0|82; (*GB) gi|225441207|ref|XP_002270931.1| (e_value=1e-34) PREDICTED: zinc finger protein 593-like [Vitis vinifera];; (*TAIR) AT2G36930.1 (e_value=9e-28) | Symbols: | zinc finger (C2H2 type) family protein | chr2:15510002-15511347 REVERSE LENGTH=198;; (*ITAG) Solyc09g008230.2.1 (e_value=5e-39) genomic_reference:SL2.40ch09 gene_region:1681078-1684790 transcript_region:SL2.40ch09:1681078..1684790+ go_terms:GO:0003714 functional_description:"Zinc finger protein 593 (Fragment) (AHRD V1 **-- B2L5L2_XENBO); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0003714 NbS00015740g0001.1 protein AED:0.16 eAED:0.16 QI:378|0.85|0.75|1|1|1|8|0|370; (*GB) gi|225450201|ref|XP_002264792.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240969 [Vitis vinifera];; (*TAIR) AT5G48020.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:19462888-19464790 REVERSE LENGTH=355;; (*ITAG) Solyc10g037950.1.1 (e_value=4e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:17993608-17995316 transcript_region:SL2.40ch10:17993608..17995316+ functional_description:"X7 (Fragment) (AHRD V1 *-*- B2CZN0_SILDI)"; NbS00003063g0013.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0.12|0.11|9|0|542; (*GB) gi|113205445|gb|AAW28576.2| (e_value=7e-47) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=7e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00003063g0014.1 protein AED:0.11 eAED:0.12 QI:0|0.88|0.6|1|0.88|0.8|10|0|835; (*GB) gi|359480805|ref|XP_002277823.2| (e_value=5e-160) PREDICTED: uncharacterized protein LOC100259298 [Vitis vinifera];; (*TAIR) AT5G42930.1 (e_value=7e-135) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467;; (*ITAG) Solyc02g090920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46973513-46975766 transcript_region:SL2.40ch02:46973513..46975766- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00027837g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|7227894|sp|Q40505.1|FL2_TOBAC (e_value=1e-39) RecName: Full=Floricaula/leafy homolog 2; AltName: Full=NFL2;; (*SWP) sp|Q40505|FL2_TOBAC (e_value=4e-41) Floricaula/leafy homolog 2 OS=Nicotiana tabacum GN=FL2 PE=2 SV=1;; (*TAIR) AT5G61850.1 (e_value=2e-20) | Symbols: LFY, LFY3 | floral meristem identity control protein LEAFY (LFY) | chr5:24844295-24846933 FORWARD LENGTH=420;; (*ITAG) Solyc03g118160.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61162449-61164404 transcript_region:SL2.40ch03:61162449..61164404+ go_terms:GO:0008134 functional_description:"FLORICAULA/LEAFY-like protein (AHRD V1 ***- Q9LDP5_SOLLC); contains Interpro domain(s) IPR002910 Floricaula/leafy protein "; GO:0008134 NbS00045870g0004.1 protein AED:0.07 eAED:0.07 QI:82|0.83|0.57|1|0.66|0.71|7|0|344; (*GB) gi|302143935|emb|CBI23040.3| (e_value=7e-175) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNE9|ATXR6_ARATH (e_value=2e-155) Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana GN=ATXR6 PE=2 SV=1;; (*TAIR) AT5G24330.1 (e_value=2e-156) | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349;; (*ITAG) Solyc03g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46291731-46294839 transcript_region:SL2.40ch03:46291731..46294839+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 **-- D8L815_9POAL); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003677 NbS00003381g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|369; (*GB) gi|225441789|ref|XP_002283735.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Vitis vinifera];; (*SWP) sp|Q9FND7|PP410_ARATH (e_value=4e-125) Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1;; (*TAIR) AT5G40405.1 (e_value=3e-126) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16169315-16171153 FORWARD LENGTH=612;; (*ITAG) Solyc10g080220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60898450-60900728 transcript_region:SL2.40ch10:60898450..60900728+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003381g0016.1 protein AED:0.20 eAED:0.20 QI:0|0|0.33|1|0|0.66|3|0|321; (*GB) gi|225441795|ref|XP_002283838.1| (e_value=2e-126) PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q0D5B9|SAP16_ORYSJ (e_value=1e-109) Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 OS=Oryza sativa subsp. japonica GN=SAP16 PE=2 SV=2;; (*TAIR) AT2G41835.1 (e_value=2e-109) | Symbols: | zinc finger (C2H2 type, AN1-like) family protein | chr2:17458020-17459414 REVERSE LENGTH=279;; (*ITAG) Solyc10g080200.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60873586-60876940 transcript_region:SL2.40ch10:60873586..60876940- go_terms:GO:0008270,GO:0005622 functional_description:"AN1-type zinc finger protein 2B (AHRD V1 ***- B4FVR8_MAIZE); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270,GO:0005622 NbS00003381g0017.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0.25|1|0.66|0.5|4|0|207; (*GB) gi|210063109|gb|ACJ06505.1| (e_value=8e-78) polygalacturonase [Diospyros kaki];; (*SWP) sp|P05117|PGLR_SOLLC (e_value=5e-77) Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1;; (*TAIR) AT3G07970.1 (e_value=3e-62) | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439;; (*ITAG) Solyc10g080210.1.1 (e_value=3e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60883700-60890335 transcript_region:SL2.40ch10:60883700..60890335- go_terms:GO:0004650 functional_description:"Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0004650 NbS00003381g0014.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|255577477|ref|XP_002529617.1| (e_value=4e-36) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9CA54|PP122_ARATH (e_value=2e-15) Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1;; (*TAIR) AT1G74630.1 (e_value=1e-16) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28030521-28032452 FORWARD LENGTH=643;; (*ITAG) Solyc10g080220.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60898450-60900728 transcript_region:SL2.40ch10:60898450..60900728+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003381g0015.1 protein AED:0.35 eAED:0.73 QI:0|0|0|1|0|0|2|0|86 NbS00048347g0005.1 protein AED:0.17 eAED:0.17 QI:126|0.85|0.62|1|1|0.87|8|0|376; (*GB) gi|225454381|ref|XP_002279076.1| (e_value=2e-93) PREDICTED: uncharacterized protein LOC100258473 [Vitis vinifera];; (*TAIR) AT2G46200.2 (e_value=2e-76) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:18974864-18976646 REVERSE LENGTH=382;; (*ITAG) Solyc01g095230.2.1 (e_value=6e-161) genomic_reference:SL2.40ch01 gene_region:78332859-78338053 transcript_region:SL2.40ch01:78332859..78338053- functional_description:"Programmed cell death 7 (AHRD V1 *-*- Q567N3_DANRE)"; NbS00053528g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.57|0.5|1|0.42|0.5|8|327|468; (*GB) gi|75241167|sp|Q84LF0.1|5EAS2_NICAT (e_value=0.0) RecName: Full=5-epi-aristolochene synthase 2; Short=NaEAS37;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=0.0) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=4e-75) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00053528g0012.1 protein AED:0.31 eAED:0.38 QI:0|1|0|1|0|0|2|0|127; (*GB) gi|75241167|sp|Q84LF0.1|5EAS2_NICAT (e_value=1e-43) RecName: Full=5-epi-aristolochene synthase 2; Short=NaEAS37;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=4e-45) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=1e-22) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101210.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00053528g0001.1 protein AED:0.32 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|101 NbS00053528g0011.1 protein AED:0.29 eAED:0.41 QI:0|0|0|1|0|0|4|0|159; (*GB) gi|75241167|sp|Q84LF0.1|5EAS2_NICAT (e_value=2e-33) RecName: Full=5-epi-aristolochene synthase 2; Short=NaEAS37;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=6e-35) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*ITAG) Solyc01g101190.2.1 (e_value=4e-24) genomic_reference:SL2.40ch01 gene_region:82786563-82788821 transcript_region:SL2.40ch01:82786563..82788821+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00033079g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|210; (*GB) gi|255542610|ref|XP_002512368.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q84MC0|UGPI4_ARATH (e_value=1e-49) Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1;; (*TAIR) AT1G54860.1 (e_value=4e-52) | Symbols: | Glycoprotein membrane precursor GPI-anchored | chr1:20457522-20458434 REVERSE LENGTH=200;; (*ITAG) Solyc01g098860.2.1 (e_value=4e-90) genomic_reference:SL2.40ch01 gene_region:81006669-81008534 transcript_region:SL2.40ch01:81006669..81008534+ functional_description:"Uncharacterized GPI-anchored protein At3g06035 (AHRD V1 ***- UGPI4_ARATH)"; NbS00018104g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.8|5|0|248; (*GB) gi|688424|dbj|BAA05476.1| (e_value=7e-105) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|O23547|EXLB1_ARATH (e_value=9e-70) Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=7e-71) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077910.2.1 (e_value=5e-149) genomic_reference:SL2.40ch08 gene_region:58978783-58981044 transcript_region:SL2.40ch08:58978783..58981044+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WRS3_ARATH); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00018104g0012.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|418; (*GB) gi|359496368|ref|XP_003635220.1| (e_value=1e-178) PREDICTED: uncharacterized protein LOC100242100 [Vitis vinifera];; (*SWP) sp|O82175|SUVH5_ARATH (e_value=8e-156) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1;; (*TAIR) AT2G35160.1 (e_value=6e-157) | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14823562-14825946 FORWARD LENGTH=794;; (*ITAG) Solyc08g077940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58996460-58999573 transcript_region:SL2.40ch08:58996460..58999573- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00018104g0005.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|351; (*GB) gi|359496368|ref|XP_003635220.1| (e_value=6e-24) PREDICTED: uncharacterized protein LOC100242100 [Vitis vinifera];; (*SWP) sp|Q8VZ17|SUVH6_ARATH (e_value=7e-23) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2;; (*TAIR) AT2G22740.1 (e_value=5e-24) | Symbols: SUVH6, SDG23 | SU(VAR)3-9 homolog 6 | chr2:9664256-9666628 REVERSE LENGTH=790;; (*ITAG) Solyc08g077940.1.1 (e_value=9e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58996460-58999573 transcript_region:SL2.40ch08:58996460..58999573- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00016206g0012.1 protein AED:0.13 eAED:0.13 QI:141|1|1|1|0.73|0.75|16|468|749; (*GB) gi|255564194|ref|XP_002523094.1| (e_value=0.0) gamma-tubulin complex component, putative [Ricinus communis];; (*SWP) sp|Q9M350|GCP4_ARATH (e_value=0.0) Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2;; (*TAIR) AT3G53760.1 (e_value=0.0) | Symbols: GCP4, ATGCP4 | GAMMA-TUBULIN COMPLEX PROTEIN 4 | chr3:19918182-19922264 REVERSE LENGTH=745;; (*ITAG) Solyc09g075190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62458603-62469576 transcript_region:SL2.40ch09:62458603..62469576- go_terms:GO:0015631 functional_description:"Gamma-tubulin complex component 4 (Predicted) (AHRD V1 **** B2KIP3_RHIFE); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0015631 NbS00016206g0010.1 protein AED:0.23 eAED:0.27 QI:0|0.5|0.4|1|1|1|5|0|486; (*GB) gi|225437398|ref|XP_002270248.1| (e_value=0.0) PREDICTED: blue-light photoreceptor PHR2 [Vitis vinifera];; (*SWP) sp|Q8LB72|PHR2_ARATH (e_value=1e-177) Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2;; (*TAIR) AT2G47590.1 (e_value=8e-179) | Symbols: PHR2 | photolyase/blue-light receptor 2 | chr2:19521888-19523732 FORWARD LENGTH=447;; (*ITAG) Solyc09g075180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62453539-62456934 transcript_region:SL2.40ch09:62453539..62456934- go_terms:GO:0006281 functional_description:"Cryptochrome DASH family (AHRD V1 **-- B5W072_SPIMA); contains Interpro domain(s) IPR006050 DNA photolyase, N-terminal "; GO:0006281 NbS00016206g0011.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.83|0.2|0.33|6|0|361; (*GB) gi|224131110|ref|XP_002321003.1| (e_value=2e-140) Mg2+ and Zn2+/H+ antiporter, atmhx1-like protein [Populus trichocarpa];; (*SWP) sp|Q6H641|MHX2_ORYSJ (e_value=5e-128) Magnesium/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=MHX2 PE=3 SV=2;; (*TAIR) AT2G47600.1 (e_value=2e-128) | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/proton exchanger | chr2:19524518-19526828 REVERSE LENGTH=539;; (*ITAG) Solyc06g009130.2.1 (e_value=6e-149) genomic_reference:SL2.40ch06 gene_region:3079097-3086035 transcript_region:SL2.40ch06:3079097..3086035+ go_terms:GO:0016021 functional_description:"Sodium-calcium exchanger 3 (Fragment) (AHRD V1 *-*- Q9EPU8_MOUSE); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021 NbS00017186g0002.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|112; (*TAIR) AT1G21500.1 (e_value=5e-14) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7530047-7530954 REVERSE LENGTH=126;; (*ITAG) Solyc12g019550.1.1 (e_value=6e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:10628080-10628914 transcript_region:SL2.40ch12:10628080..10628914+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006312g0012.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0.66|0.5|4|0|1404; (*GB) gi|225426708|ref|XP_002275452.1| (e_value=0.0) PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera];; (*SWP) sp|O64495|SDD1_ARATH (e_value=0.0) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=0.0) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g080010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60541190-60543397 transcript_region:SL2.40ch08:60541190..60543397+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00006312g0013.1 protein AED:0.18 eAED:0.18 QI:170|0.9|0.85|0.95|0.95|0.90|21|0|724; (*GB) gi|297736434|emb|CBI25305.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G13560.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | chr5:4361579-4366318 REVERSE LENGTH=679;; (*ITAG) Solyc04g010220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3536536-3549046 transcript_region:SL2.40ch04:3536536..3549046+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020230g0011.1 protein AED:0.00 eAED:0.00 QI:410|1|1|1|1|1|3|210|1088; (*GB) gi|225448447|ref|XP_002272110.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260392 [Vitis vinifera];; (*SWP) sp|O31673|CLPE_BACSU (e_value=1e-11) ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus subtilis (strain 168) GN=clpE PE=1 SV=1;; (*TAIR) AT2G29970.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr2:12776601-12779784 FORWARD LENGTH=1002;; (*ITAG) Solyc06g051460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31369126-31374317 transcript_region:SL2.40ch06:31369126..31374317- functional_description:"ATP-dependent chaperone ClpB (AHRD V1 *--- C0GC24_9FIRM)"; NbS00020230g0014.1 protein AED:0.17 eAED:0.17 QI:723|0.71|0.75|1|0.57|0.62|8|69|489; (*GB) gi|356508734|ref|XP_003523109.1| (e_value=2e-129) PREDICTED: transmembrane anterior posterior transformation protein 1 homolog isoform 2 [Glycine max];; (*SWP) sp|F4HVJ3|POD1_ARATH (e_value=3e-69) Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1;; (*TAIR) AT1G67960.1 (e_value=2e-70) | Symbols: | CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE LENGTH=624;; (*ITAG) Solyc06g051430.2.1 (e_value=4e-178) genomic_reference:SL2.40ch06 gene_region:31337737-31342781 transcript_region:SL2.40ch06:31337737..31342781+ functional_description:"Transmembrane anterior posterior transformation protein 1 homolog (AHRD V1 *--- TAPT1_CHICK); contains Interpro domain(s) IPR008010 Membrane protein,Tapt1/CMV receptor "; NbS00025441g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|805; (*GB) gi|253740260|gb|ACT34764.1| (e_value=0.0) subtilisin-like protease preproenzyme [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-176) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=0.0) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc12g088760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62455467-62457716 transcript_region:SL2.40ch12:62455467..62457716+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q38708_ALNGL); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00025441g0101.1 protein AED:0.15 eAED:0.15 QI:0|0.2|0.33|1|1|1|6|0|732 NbS00025441g0102.1 protein AED:0.16 eAED:0.16 QI:175|1|1|1|1|1|6|1014|269 NbS00025441g0111.1 protein AED:0.19 eAED:0.19 QI:0|0.8|1|1|1|1|6|440|460 NbS00002313g0019.1 protein AED:0.01 eAED:0.01 QI:150|1|1|1|0.5|0.33|3|217|210; (*GB) gi|224083266|ref|XP_002306974.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42330.1 (e_value=4e-39) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16926672-16927370 FORWARD LENGTH=205;; (*ITAG) Solyc04g082380.2.1 (e_value=3e-50) genomic_reference:SL2.40ch04 gene_region:63655461-63657278 transcript_region:SL2.40ch04:63655461..63657278+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002313g0025.1 protein AED:0.14 eAED:0.14 QI:264|0.9|0.81|1|0.7|0.81|11|0|430; (*GB) gi|359491904|ref|XP_002270277.2| (e_value=0.0) PREDICTED: carboxypeptidase A2-like [Vitis vinifera];; (*TAIR) AT5G42320.1 (e_value=2e-165) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:16918651-16920845 REVERSE LENGTH=379;; (*ITAG) Solyc04g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63639764-63644861 transcript_region:SL2.40ch04:63639764..63644861- go_terms:GO:0006508 functional_description:"Carboxypeptidase B (AHRD V1 *-*- D3PJJ8_9MAXI); contains Interpro domain(s) IPR000834 Peptidase M14, carboxypeptidase A "; GO:0006508 NbS00002313g0022.1 protein AED:0.18 eAED:0.18 QI:63|1|1|1|0.69|0.78|14|412|864; (*GB) gi|1169912|sp|P30924.2|GLGB_SOLTU (e_value=0.0) RecName: Full=1,4-alpha-glucan-branching enzyme; AltName: Full=Q-enzyme; AltName: Full=Starch-branching enzyme;; (*SWP) sp|P30924|GLGB_SOLTU (e_value=0.0) 1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2;; (*TAIR) AT5G03650.1 (e_value=0.0) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805;; (*ITAG) Solyc04g082400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63662213-63669892 transcript_region:SL2.40ch04:63662213..63669892- go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** Q08131_MANES); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00002313g0002.1 protein AED:0.21 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|224061883|ref|XP_002300646.1| (e_value=5e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=4e-46) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=3e-57) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=6e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00002313g0009.1 protein AED:0.40 eAED:0.40 QI:0|0.85|0.75|1|1|0.87|8|0|219; (*GB) gi|224086036|ref|XP_002307788.1| (e_value=3e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|O60762|DPM1_HUMAN (e_value=1e-75) Dolichol-phosphate mannosyltransferase OS=Homo sapiens GN=DPM1 PE=1 SV=1;; (*TAIR) AT1G20575.1 (e_value=2e-110) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:7126987-7128677 REVERSE LENGTH=246;; (*ITAG) Solyc04g082390.2.1 (e_value=1e-119) genomic_reference:SL2.40ch04 gene_region:63657534-63661669 transcript_region:SL2.40ch04:63657534..63661669- go_terms:GO:0004582 functional_description:"Dolichyl-phosphate beta-mannosyltransferase (AHRD V1 **** B8C1A1_THAPS); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0004582 NbS00002313g0023.1 protein AED:0.39 eAED:0.46 QI:0|0.7|0.54|0.90|1|0.90|11|0|395; (*GB) gi|297745547|emb|CBI40712.3| (e_value=8e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEV3|Y2060_ARATH (e_value=1e-157) BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1;; (*TAIR) AT2G30600.4 (e_value=8e-159) | Symbols: | BTB/POZ domain-containing protein | chr2:13037410-13041475 FORWARD LENGTH=809;; (*ITAG) Solyc04g082410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63671744-63675218 transcript_region:SL2.40ch04:63671744..63675218- go_terms:GO:0007155 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7LC69_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0007155 NbS00002313g0008.1 protein AED:0.48 eAED:0.65 QI:0|0|0|1|1|1|3|0|76; (*TAIR) AT1G20575.1 (e_value=4e-14) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:7126987-7128677 REVERSE LENGTH=246;; (*ITAG) Solyc04g082390.2.1 (e_value=8e-15) genomic_reference:SL2.40ch04 gene_region:63657534-63661669 transcript_region:SL2.40ch04:63657534..63661669- go_terms:GO:0004582 functional_description:"Dolichyl-phosphate beta-mannosyltransferase (AHRD V1 **** B8C1A1_THAPS); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0004582 NbS00029837g0002.1 protein AED:0.36 eAED:0.36 QI:964|0.66|0.5|1|1|1|4|0|170; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=2e-51) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q93W34|RP45C_ARATH (e_value=5e-45) Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1;; (*TAIR) AT4G27000.1 (e_value=4e-46) | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415;; (*ITAG) Solyc02g080420.2.1 (e_value=1e-65) genomic_reference:SL2.40ch02 gene_region:39222034-39228232 transcript_region:SL2.40ch02:39222034..39228232+ go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **** Q9LEB4_NICPL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00029837g0001.1 protein AED:0.37 eAED:0.37 QI:185|1|1|1|1|1|2|295|271; (*GB) gi|75334880|sp|Q9LEB4.1|RBP45_NICPL (e_value=2e-99) RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protein RBP45; AltName: Full=RNA-binding protein 45; Short=NplRBP45;; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=5e-101) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.1 (e_value=3e-100) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917301 FORWARD LENGTH=306;; (*ITAG) Solyc02g080420.2.1 (e_value=4e-127) genomic_reference:SL2.40ch02 gene_region:39222034-39228232 transcript_region:SL2.40ch02:39222034..39228232+ go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **** Q9LEB4_NICPL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00029837g0003.1 protein AED:0.28 eAED:0.28 QI:406|0.6|0.33|1|0.6|0.5|6|0|138; (*GB) gi|255556538|ref|XP_002519303.1| (e_value=3e-66) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|C0LU16|MED21_ARATH (e_value=1e-63) Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1;; (*TAIR) AT4G04780.1 (e_value=9e-65) | Symbols: MED21 | mediator 21 | chr4:2432665-2433397 FORWARD LENGTH=139;; (*ITAG) Solyc02g080430.2.1 (e_value=3e-77) genomic_reference:SL2.40ch02 gene_region:39228823-39231117 transcript_region:SL2.40ch02:39228823..39231117- functional_description:"Mediator of RNA polymerase II transcription subunit 21 (AHRD V1 ***- MED21_CAEEL)"; NbS00017329g0005.1 protein AED:0.59 eAED:0.61 QI:0|0|0|0.5|0.33|0.75|4|0|188; (*ITAG) Solyc08g044370.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00017329g0004.1 protein AED:0.37 eAED:1.00 QI:2|0|0|1|0|0|3|112|39 NbS00036939g0016.1 protein AED:0.02 eAED:0.02 QI:191|1|0.66|1|0.5|0.66|3|0|386; (*GB) gi|255537789|ref|XP_002509961.1| (e_value=7e-90) ring finger protein, putative [Ricinus communis];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=4e-58) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT5G53110.1 (e_value=1e-85) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc08g082310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62306796-62311786 transcript_region:SL2.40ch08:62306796..62311786- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00036939g0005.1 protein AED:0.18 eAED:0.22 QI:0|0|0.5|1|0|0.5|2|0|295; (*GB) gi|147795390|emb|CAN67605.1| (e_value=2e-30) hypothetical protein VITISV_030993 [Vitis vinifera];; (*SWP) sp|Q9FLP7|FB294_ARATH (e_value=3e-13) Putative F-box protein At5g55150 OS=Arabidopsis thaliana GN=At5g55150 PE=4 SV=2;; (*TAIR) AT5G55150.1 (e_value=3e-14) | Symbols: | Protein of unknown function (DUF295) | chr5:22382275-22383392 REVERSE LENGTH=360;; (*ITAG) Solyc08g082350.2.1 (e_value=4e-100) genomic_reference:SL2.40ch08 gene_region:62345086-62348458 transcript_region:SL2.40ch08:62345086..62348458+ functional_description:"F-box domain containing protein expressed (AHRD V1 ***- Q2R1T3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00036939g0001.1 protein AED:0.23 eAED:0.23 QI:375|0.75|0.8|1|0.75|0.6|5|322|360; (*GB) gi|225426344|ref|XP_002270160.1| (e_value=4e-138) PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Vitis vinifera];; (*SWP) sp|Q8N806|UBR7_HUMAN (e_value=4e-47) Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2;; (*TAIR) AT4G23860.3 (e_value=2e-95) | Symbols: | PHD finger protein-related | chr4:12409336-12411336 FORWARD LENGTH=452;; (*ITAG) Solyc08g082320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62316163-62320828 transcript_region:SL2.40ch08:62316163..62320828+ go_terms:GO:0008270 functional_description:"Ubr7 protein (Fragment) (AHRD V1 **-- Q68FN3_MOUSE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00036939g0004.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=4e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00036939g0003.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.16|1|1|6|0|380; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-20) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=5e-33) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00016002g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|187; (*GB) gi|359482221|ref|XP_003632734.1| (e_value=6e-66) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1-like [Vitis vinifera];; (*SWP) sp|A8XGH1|RPAB1_CAEBR (e_value=9e-19) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1;; (*TAIR) AT3G57080.1 (e_value=3e-56) | Symbols: RPB5B, NRPE5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:21125878-21127470 FORWARD LENGTH=222;; (*ITAG) Solyc04g040170.2.1 (e_value=4e-103) genomic_reference:SL2.40ch04 gene_region:31083618-31092516 transcript_region:SL2.40ch04:31083618..31092516+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I (AHRD V1 ***- C1FYH2_PARBD); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00021535g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.82|0.77|1|0.64|0.66|18|362|443; (*GB) gi|359475324|ref|XP_003631655.1| (e_value=0.0) PREDICTED: probable phenylalanyl-tRNA synthetase alpha chain-like [Vitis vinifera];; (*SWP) sp|Q9T034|SYFA_ARATH (e_value=0.0) Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3;; (*TAIR) AT4G39280.2 (e_value=0.0) | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18280292-18284831 REVERSE LENGTH=485;; (*ITAG) Solyc02g090860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46907110-46917832 transcript_region:SL2.40ch02:46907110..46917832- go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 **** B6SS66_MAIZE); contains Interpro domain(s) IPR002319 Phenylalanyl-tRNA synthetase, class IIc-related "; GO:0005515,GO:0004826 NbS00009835g0012.1 protein AED:0.34 eAED:0.35 QI:0|0.62|0.44|1|0.62|0.66|9|0|380; (*GB) gi|359495874|ref|XP_002265653.2| (e_value=0.0) PREDICTED: beta-glucosidase 42-like [Vitis vinifera];; (*SWP) sp|Q9FIW4|BGL42_ARATH (e_value=3e-173) Beta-glucosidase 42 OS=Arabidopsis thaliana GN=BGLU42 PE=2 SV=1;; (*TAIR) AT5G36890.1 (e_value=2e-174) | Symbols: BGLU42 | beta glucosidase 42 | chr5:14542164-14546090 REVERSE LENGTH=490;; (*ITAG) Solyc11g008720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2894342-2901035 transcript_region:SL2.40ch11:2894342..2901035+ go_terms:GO:0005975 functional_description:"Beta-glucosidase G4 (AHRD V1 ***- A8TVR1_MEDTR); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00009835g0013.1 protein AED:0.41 eAED:0.46 QI:24|0.4|0.5|1|0.2|0|6|0|209; (*ITAG) Solyc11g008730.1.1 (e_value=3e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2905950-2911647 transcript_region:SL2.40ch11:2905950..2911647+ functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- B5XFG3_SALSA); contains Interpro domain(s) IPR019955 Ubiquitin supergroup "; NbS00009835g0007.1 protein AED:0.12 eAED:0.12 QI:746|0.62|0.58|0.82|0.75|0.76|17|479|1259; (*GB) gi|374095603|gb|AEY85029.1| (e_value=0.0) cohesin subunit [Camellia sinensis];; (*SWP) sp|Q9FQ19|SCC13_ARATH (e_value=1e-33) Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2;; (*TAIR) AT5G16270.1 (e_value=5e-68) | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031;; (*ITAG) Solyc11g008740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2912620-2925432 transcript_region:SL2.40ch11:2912620..2925432- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00009918g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|4|0|137; (*GB) gi|15824574|gb|AAL09401.1|AF307336_1 (e_value=3e-94) ribosomal protein [Petunia x hybrida];; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=2e-87) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=1e-88) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071870.2.1 (e_value=4e-96) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00000706g0003.1 protein AED:0.02 eAED:0.02 QI:340|1|1|1|1|1|2|94|534; (*GB) gi|225466085|ref|XP_002264861.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 59-like, partial [Vitis vinifera];; (*SWP) sp|Q9STY3|PME33_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 33 OS=Arabidopsis thaliana GN=PME33 PE=2 SV=1;; (*TAIR) AT3G47400.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:17465629-17467888 FORWARD LENGTH=594;; (*ITAG) Solyc06g034360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20862003-20865669 transcript_region:SL2.40ch06:20862003..20865669- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9R9R4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00022166g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|182; (*GB) gi|225441226|ref|XP_002272200.1| (e_value=5e-73) PREDICTED: nudix hydrolase 16, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LHK1|NUD16_ARATH (e_value=1e-58) Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1;; (*TAIR) AT3G12600.2 (e_value=7e-60) | Symbols: atnudt16, NUDT16 | nudix hydrolase homolog 16 | chr3:4004676-4005995 FORWARD LENGTH=171;; (*ITAG) Solyc10g080760.1.1 (e_value=6e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61284152-61287917 transcript_region:SL2.40ch10:61284152..61287917+ go_terms:GO:0016787 functional_description:"Hydrolase NUDIX family protein expressed (AHRD V1 ***- Q6ATR4_ORYSJ); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00022166g0009.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.66|3|0|155; (*GB) gi|255545796|ref|XP_002513958.1| (e_value=5e-25) cytochrome C oxidase polypeptide vib, putative [Ricinus communis];; (*SWP) sp|Q9S7L9|CX6B1_ARATH (e_value=1e-21) Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=2 SV=1;; (*TAIR) AT1G22450.1 (e_value=8e-23) | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B | chr1:7925447-7926918 FORWARD LENGTH=191;; (*ITAG) Solyc12g057120.1.1 (e_value=2e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48552653-48555057 transcript_region:SL2.40ch12:48552653..48555057+ go_terms:GO:0005739 functional_description:"Subunit VIb of cytochrome c oxidase (AHRD V1 *-*- C4R7U6_PICPG); contains Interpro domain(s) IPR003213 Cytochrome c oxidase, subunit VIb "; GO:0005739 NbS00050253g0010.1 protein AED:0.20 eAED:0.22 QI:0|0.66|0.61|1|0.58|0.69|13|0|473; (*GB) gi|225430336|ref|XP_002285251.1| (e_value=0.0) PREDICTED: extended synaptotagmin-1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5M7N9|ESYT3_XENTR (e_value=2e-32) Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1;; (*TAIR) AT1G05500.1 (e_value=0.0) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc07g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2323848-2335317 transcript_region:SL2.40ch07:2323848..2335317- functional_description:"Plant synaptotagmin (AHRD V1 **-- B9N719_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00050253g0012.1 protein AED:0.05 eAED:0.05 QI:1300|1|0.92|1|0.91|0.76|13|0|625; (*GB) gi|380509269|gb|AFD64637.1| (e_value=0.0) sucrose-phosphate synthase A2 [Solanum lycopersicum];; (*SWP) sp|O22060|SPSA1_CITUN (e_value=0.0) Probable sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1;; (*TAIR) AT5G11110.1 (e_value=0.0) | Symbols: SPS1, ATSPS2F, KNS2, SPS2F | sucrose phosphate synthase 2F | chr5:3536426-3540901 FORWARD LENGTH=1047;; (*ITAG) Solyc08g042000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28598289-28605520 transcript_region:SL2.40ch08:28598289..28605520- go_terms:GO:0046524 functional_description:"Sucrose phosphate synthase protein 1 (AHRD V1 **** B2BMQ3_PRUPE); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0046524 NbS00014196g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.33|0.5|4|360|439; (*GB) gi|225456548|ref|XP_002265203.1| (e_value=2e-137) PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=4e-45) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=3e-46) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc12g038520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35933880-35935930 transcript_region:SL2.40ch12:35933880..35935930- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00059369g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0|2|526|150; (*GB) gi|225444893|ref|XP_002279486.1| (e_value=3e-37) PREDICTED: putative transcription factor bHLH041 [Vitis vinifera];; (*SWP) sp|Q9LTS4|BH041_ARATH (e_value=2e-19) Putative transcription factor bHLH041 OS=Arabidopsis thaliana GN=BHLH41 PE=4 SV=1;; (*TAIR) AT5G56960.1 (e_value=2e-20) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:23038703-23041174 REVERSE LENGTH=466;; (*ITAG) Solyc07g039570.2.1 (e_value=6e-39) genomic_reference:SL2.40ch07 gene_region:45208927-45213761 transcript_region:SL2.40ch07:45208927..45213761+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00009878g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.57|1|0.5|0.57|7|68|731; (*GB) gi|49240345|gb|AAT58045.1| (e_value=0.0) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=0.0) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=0.0) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00009878g0006.1 protein AED:0.57 eAED:0.59 QI:0|0|0|0.33|0|0.66|3|0|66 NbS00024891g0002.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|1|1|2|0|183; (*GB) gi|147834707|emb|CAN70556.1| (e_value=5e-68) hypothetical protein VITISV_016468 [Vitis vinifera];; (*SWP) sp|Q8K0G8|ESRP2_MOUSE (e_value=2e-19) Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1;; (*TAIR) AT5G66010.1 (e_value=3e-59) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26399612-26400753 FORWARD LENGTH=255;; (*ITAG) Solyc03g032140.2.1 (e_value=2e-86) genomic_reference:SL2.40ch03 gene_region:8925019-8927974 transcript_region:SL2.40ch03:8925019..8927974+ go_terms:GO:0017025,GO:0003729 functional_description:"Heterogeneous nuclear ribonucleoprotein H1 (AHRD V1 **-- Q6P0V0_DANRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0017025,GO:0003729 NbS00004608g0009.1 protein AED:0.00 eAED:0.00 QI:130|1|1|1|0.83|0.85|7|340|273; (*GB) gi|255560784|ref|XP_002521405.1| (e_value=9e-145) Protein C20orf11, putative [Ricinus communis];; (*SWP) sp|Q54X16|U559_DICDI (e_value=2e-84) UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2;; (*TAIR) AT1G61150.1 (e_value=2e-131) | Symbols: | LisH and RanBPM domains containing protein | chr1:22542928-22544355 FORWARD LENGTH=243;; (*ITAG) Solyc03g006580.2.1 (e_value=1e-149) genomic_reference:SL2.40ch03 gene_region:1153790-1163207 transcript_region:SL2.40ch03:1153790..1163207+ go_terms:GO:0005515 functional_description:"Ran-binding proteins 9/10 homolog (AHRD V1 *--* RBP9X_DROME); contains Interpro domain(s) IPR019589 Ran binding protein, CRA domain "; GO:0005515 NbS00004608g0003.1 protein AED:0.03 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|285; (*GB) gi|255560788|ref|XP_002521407.1| (e_value=5e-89) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0WW40|FBK5_ARATH (e_value=7e-17) F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1;; (*TAIR) AT1G16250.1 (e_value=5e-18) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5557214-5558697 FORWARD LENGTH=383;; (*ITAG) Solyc02g078710.1.1 (e_value=5e-151) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:37955559-37956662 transcript_region:SL2.40ch02:37955559..37956662+ functional_description:"Kelch-like 8 (AHRD V1 *-*- Q28D69_XENTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00044751g0017.1 protein AED:0.19 eAED:0.19 QI:213|1|1|1|1|1|9|34|237; (*GB) gi|388510594|gb|AFK43363.1| (e_value=1e-171) unknown [Medicago truncatula];; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=6e-173) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT3G14290.1 (e_value=9e-172) | Symbols: PAE2 | 20S proteasome alpha subunit E2 | chr3:4764364-4766381 FORWARD LENGTH=237;; (*ITAG) Solyc08g016510.2.1 (e_value=6e-177) genomic_reference:SL2.40ch08 gene_region:7616130-7622289 transcript_region:SL2.40ch08:7616130..7622289- go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6SW82_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00044751g0005.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|255557315|ref|XP_002519688.1| (e_value=2e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46230.1 (e_value=3e-55) | Symbols: | Protein of unknown function, DUF538 | chr5:18742593-18743024 REVERSE LENGTH=143;; (*ITAG) Solyc08g016580.1.1 (e_value=9e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:7881032-7881454 transcript_region:SL2.40ch08:7881032..7881454+ functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00044751g0020.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|0.5|1|1|2|159|138 NbS00044751g0023.1 protein AED:0.10 eAED:0.10 QI:85|0.9|0.90|1|0.9|0.90|11|676|696; (*GB) gi|861147|emb|CAA56175.1| (e_value=0.0) K+ channel inward rectifying [Solanum tuberosum];; (*SWP) sp|Q39128|KAT1_ARATH (e_value=0.0) Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2;; (*TAIR) AT5G46240.1 (e_value=0.0) | Symbols: KAT1 | potassium channel in Arabidopsis thaliana 1 | chr5:18743652-18746561 REVERSE LENGTH=677;; (*ITAG) Solyc08g016500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:7611306-7614599 transcript_region:SL2.40ch08:7611306..7614599+ go_terms:GO:0042802 functional_description:"Potassium channel (AHRD V1 ***- Q9LEG6_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0042802 NbS00044751g0007.1 protein AED:0.42 eAED:0.63 QI:118|0|0.16|1|1|1|6|0|125 NbS00044751g0021.1 protein AED:0.10 eAED:0.28 QI:60|0|0|1|0|0|4|0|140 NbS00033469g0001.1 protein AED:0.24 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|273; (*ITAG) Solyc01g056950.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00033469g0007.1 protein AED:0.27 eAED:0.27 QI:233|0.33|0.75|0.75|1|1|4|457|193; (*GB) gi|313586603|gb|ADR71312.1| (e_value=2e-73) hypothetical protein 33 [Hevea brasiliensis];; (*TAIR) AT1G08480.1 (e_value=1e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2684340-2685395 FORWARD LENGTH=142;; (*ITAG) Solyc11g071790.1.1 (e_value=8e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52237076-52240112 transcript_region:SL2.40ch11:52237076..52240112- functional_description:"Unknown Protein (AHRD V1)"; NbS00028005g0008.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.25|1|0.66|0.5|4|0|533; (*GB) gi|225434441|ref|XP_002277656.1| (e_value=0.0) PREDICTED: sorting nexin-2-like [Vitis vinifera];; (*SWP) sp|B9DFS6|SNX2B_ARATH (e_value=0.0) Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1;; (*TAIR) AT5G07120.1 (e_value=0.0) | Symbols: SNX2b | sorting nexin 2B | chr5:2207065-2209355 REVERSE LENGTH=572;; (*ITAG) Solyc09g031600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:22093043-22095188 transcript_region:SL2.40ch09:22093043..22095188- go_terms:GO:0005543 functional_description:"Sorting nexin 1 (AHRD V1 *-*- Q70YZ8_BRAOL); contains Interpro domain(s) IPR001683 Phox-like "; GO:0005543 NbS00028005g0006.1 protein AED:0.81 eAED:0.85 QI:0|0|0|0.33|1|1|3|0|74 NbS00005710g0003.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|474; (*GB) gi|142942518|gb|ABO93009.1| (e_value=0.0) putative phytochrome kinase substrate [Solanum tuberosum];; (*SWP) sp|Q9SWI1|PKS1_ARATH (e_value=3e-36) Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2;; (*TAIR) AT2G02950.1 (e_value=2e-37) | Symbols: PKS1 | phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439;; (*ITAG) Solyc05g007480.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:2043903-2045264 transcript_region:SL2.40ch05:2043903..2045264- go_terms:GO:0005515 functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; GO:0005515 NbS00005710g0008.1 protein AED:0.22 eAED:0.24 QI:7|0.33|0.28|1|0.66|0.57|7|0|598; (*GB) gi|142942405|gb|ABO92980.1| (e_value=0.0) putative methyltransferase [Solanum tuberosum];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc05g007490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2047102-2053065 transcript_region:SL2.40ch05:2047102..2053065- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00014547g0008.1 protein AED:0.00 eAED:0.00 QI:423|1|1|1|1|1|3|197|131; (*GB) gi|147771557|emb|CAN78177.1| (e_value=2e-51) hypothetical protein VITISV_037684 [Vitis vinifera];; (*SWP) sp|Q9T068|EPFL2_ARATH (e_value=8e-28) EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1;; (*TAIR) AT4G37810.1 (e_value=6e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128;; (*ITAG) Solyc02g091910.1.1 (e_value=2e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47703714-47704259 transcript_region:SL2.40ch02:47703714..47704259- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 2 (AHRD V1 ***- EPFL2_ARATH)"; NbS00014547g0107.1 protein AED:0.18 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|238 NbS00037418g0001.1 protein AED:0.18 eAED:0.18 QI:1213|1|1|1|0.5|0.66|3|560|80 NbS00019861g0004.1 protein AED:0.02 eAED:0.02 QI:3|1|0|1|1|1|2|0|465; (*GB) gi|255566807|ref|XP_002524387.1| (e_value=1e-165) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=4e-141) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT1G13230.1 (e_value=3e-142) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:4520679-4522439 FORWARD LENGTH=424;; (*ITAG) Solyc06g069290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39446477-39448191 transcript_region:SL2.40ch06:39446477..39448191+ go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00061730g0001.1 protein AED:0.43 eAED:0.67 QI:0|0|0|1|0|0|3|0|98; (*GB) gi|224138442|ref|XP_002322815.1| (e_value=6e-17) predicted protein [Populus trichocarpa]; NbS00025635g0013.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|1267; (*GB) gi|359483677|ref|XP_003633000.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-177) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=1e-178) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g072480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00025635g0018.1 protein AED:0.12 eAED:0.12 QI:42|0.77|0.7|1|0.66|0.8|10|0|610; (*GB) gi|297740522|emb|CBI30704.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-49) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G29200.2 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:10208002-10210488 FORWARD LENGTH=611;; (*ITAG) Solyc02g072490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36256850-36260407 transcript_region:SL2.40ch02:36256850..36260407+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 *--- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00025635g0009.1 protein AED:0.32 eAED:0.63 QI:0|0|0|1|1|1|3|0|187; (*ITAG) Solyc06g011460.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00025635g0001.1 protein AED:0.08 eAED:0.08 QI:115|1|1|1|0.66|0.71|7|790|367; (*GB) gi|359483767|ref|XP_003633014.1| (e_value=5e-80) PREDICTED: uncharacterized protein LOC100854923 [Vitis vinifera];; (*TAIR) AT1G29220.1 (e_value=9e-53) | Symbols: | transcriptional regulator family protein | chr1:10210678-10212571 REVERSE LENGTH=351;; (*ITAG) Solyc02g072510.2.1 (e_value=3e-161) genomic_reference:SL2.40ch02 gene_region:36268726-36276453 transcript_region:SL2.40ch02:36268726..36276453- functional_description:"SAP30 binding protein (AHRD V1 *--- Q7ZUQ6_DANRE); contains Interpro domain(s) IPR012479 HCNGP-like "; NbS00025635g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.92|0.92|1|1|1|14|251|505; (*GB) gi|147827569|emb|CAN66345.1| (e_value=0.0) hypothetical protein VITISV_040228 [Vitis vinifera];; (*SWP) sp|Q94C70|NAT2_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2;; (*TAIR) AT2G34190.1 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr2:14437065-14439407 FORWARD LENGTH=524;; (*ITAG) Solyc02g072500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36260474-36264848 transcript_region:SL2.40ch02:36260474..36264848- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I1J7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00006425g0001.1 protein AED:0.21 eAED:0.21 QI:571|1|1|1|0.12|0.23|17|489|430; (*GB) gi|60617257|gb|AAX31277.1| (e_value=0.0) MLO1 [Capsicum annuum];; (*SWP) sp|Q94KB7|MLO6_ARATH (e_value=1e-159) MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2;; (*TAIR) AT1G61560.1 (e_value=1e-160) | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO family protein | chr1:22708875-22712032 REVERSE LENGTH=583;; (*ITAG) Solyc06g010030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:4786764-4792828 transcript_region:SL2.40ch06:4786764..4792828+ go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00021243g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.37|0.33|0.77|0.25|0.33|9|0|565; (*GB) gi|302141682|emb|CBI18885.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q304B9|NCASE_ARATH (e_value=1e-175) Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1;; (*TAIR) AT2G38010.1 (e_value=1e-176) | Symbols: | Neutral/alkaline non-lysosomal ceramidase | chr2:15906862-15909867 FORWARD LENGTH=757;; (*ITAG) Solyc04g082190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63545574-63549576 transcript_region:SL2.40ch04:63545574..63549576- go_terms:GO:0017040 functional_description:"Neutral ceramidase (AHRD V1 **** B5TWK7_HORVU); contains Interpro domain(s) IPR006823 Neutral/alkaline nonlysosomal ceramidase "; GO:0017040 NbS00021243g0008.1 protein AED:0.12 eAED:0.12 QI:138|0.88|0.9|1|1|0.9|10|976|377; (*GB) gi|7705214|gb|AAB33480.2| (e_value=0.0) alcohol dehydrogenase ADH [Solanum lycopersicum];; (*SWP) sp|Q9FH04|ADHL7_ARATH (e_value=0.0) Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1;; (*TAIR) AT5G42250.1 (e_value=0.0) | Symbols: | Zinc-binding alcohol dehydrogenase family protein | chr5:16894087-16897450 FORWARD LENGTH=390;; (*ITAG) Solyc04g082180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63543284-63545487 transcript_region:SL2.40ch04:63543284..63545487+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 1 (AHRD V1 **** B6TD57_MAIZE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00037575g0007.1 protein AED:0.24 eAED:0.24 QI:504|1|1|1|1|1|5|235|248; (*GB) gi|350535264|ref|NP_001234697.1| (e_value=1e-136) putative alfin-like transcription factor [Solanum lycopersicum];; (*SWP) sp|Q40359|ALFIN_MEDSA (e_value=2e-118) PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1;; (*TAIR) AT2G02470.1 (e_value=1e-116) | Symbols: AL6 | alfin-like 6 | chr2:652837-654621 FORWARD LENGTH=256;; (*ITAG) Solyc01g102760.2.1 (e_value=3e-139) genomic_reference:SL2.40ch01 gene_region:83252023-83258088 transcript_region:SL2.40ch01:83252023..83258088+ functional_description:"PHD finger family protein (AHRD V1 ***- D7KBK9_ARALY)"; NbS00037575g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|758; (*GB) gi|147856457|emb|CAN80769.1| (e_value=0.0) hypothetical protein VITISV_013866 [Vitis vinifera];; (*SWP) sp|Q9M9R6|PPR43_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2;; (*TAIR) AT1G14470.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4954080-4955702 FORWARD LENGTH=540;; (*ITAG) Solyc01g102790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83258225-83260605 transcript_region:SL2.40ch01:83258225..83260605- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010592g0007.1 protein AED:0.19 eAED:0.19 QI:1297|0.75|0.77|0.88|0.5|0.44|9|25|240; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-38) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00010592g0011.1 protein AED:0.20 eAED:0.20 QI:225|0.75|0.77|1|0.75|0.77|9|0|301; (*GB) gi|224069026|ref|XP_002302882.1| (e_value=3e-102) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59300.1 (e_value=3e-81) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:21918667-21921877 FORWARD LENGTH=459;; (*ITAG) Solyc06g073500.2.1 (e_value=3e-163) genomic_reference:SL2.40ch06 gene_region:41689633-41698876 transcript_region:SL2.40ch06:41689633..41698876+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041137g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.90|0.83|1|1|1|12|560|1076; (*GB) gi|33186653|gb|AAP97496.1| (e_value=0.0) cellulose synthase [Solanum tuberosum];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc12g056580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47881791-47888295 transcript_region:SL2.40ch12:47881791..47888295+ go_terms:GO:0016020,GO:0008270 functional_description:"Cellulose synthase (AHRD V1 ***- B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020,GO:0008270 NbS00024794g0017.1 protein AED:0.26 eAED:0.26 QI:669|0.5|0.6|0.8|0.25|0.6|5|0|505; (*GB) gi|350538853|ref|NP_001234362.1| (e_value=0.0) GAMYB-like2 [Solanum lycopersicum];; (*SWP) sp|A2WW87|GAM1_ORYSI (e_value=2e-94) Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G11440.1 (e_value=2e-79) | Symbols: ATMYB65, MYB65 | myb domain protein 65 | chr3:3603056-3604929 FORWARD LENGTH=553;; (*ITAG) Solyc06g073640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41820787-41825280 transcript_region:SL2.40ch06:41820787..41825280- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00024794g0006.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|194; (*GB) gi|356577365|ref|XP_003556797.1| (e_value=6e-87) PREDICTED: molybdopterin synthase catalytic subunit-like [Glycine max];; (*SWP) sp|O22827|MOC2B_ARATH (e_value=2e-80) Molybdopterin synthase catalytic subunit OS=Arabidopsis thaliana GN=MOCS2 PE=2 SV=1;; (*TAIR) AT2G43760.3 (e_value=1e-81) | Symbols: | molybdopterin biosynthesis MoaE family protein | chr2:18133276-18133872 FORWARD LENGTH=198;; (*ITAG) Solyc06g073620.2.1 (e_value=9e-116) genomic_reference:SL2.40ch06 gene_region:41810722-41812391 transcript_region:SL2.40ch06:41810722..41812391- go_terms:GO:0042802,GO:0030366 functional_description:"Molybdopterin synthase catalytic subunit (AHRD V1 **** MOC2B_ARATH); contains Interpro domain(s) IPR003448 Molybdopterin biosynthesis MoaE "; GO:0042802,GO:0030366 NbS00024794g0018.1 protein AED:0.25 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|464; (*GB) gi|225448769|ref|XP_002275729.1| (e_value=7e-142) PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9XI84|RBCMT_ARATH (e_value=6e-18) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=RBCMT PE=2 SV=1;; (*TAIR) AT3G55080.1 (e_value=6e-130) | Symbols: | SET domain-containing protein | chr3:20411476-20415830 REVERSE LENGTH=463;; (*ITAG) Solyc06g036700.1.1 (e_value=7e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:23868283-23870064 transcript_region:SL2.40ch06:23868283..23870064- functional_description:"SET domain-containing protein (AHRD V1 ***- D7LV07_ARALY); contains Interpro domain(s) IPR001214 SET "; NbS00024794g0019.1 protein AED:0.26 eAED:0.26 QI:0|0.90|0.83|1|0.81|0.83|12|0|515; (*GB) gi|225435987|ref|XP_002272429.1| (e_value=0.0) PREDICTED: cyclin-dependent kinase C-1-like [Vitis vinifera];; (*SWP) sp|Q9LFT8|CDKC1_ARATH (e_value=0.0) Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1;; (*TAIR) AT5G10270.1 (e_value=0.0) | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505;; (*ITAG) Solyc06g073630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41813794-41819775 transcript_region:SL2.40ch06:41813794..41819775+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00024794g0023.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|107 NbS00059913g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0|0.8|0.75|1|5|0|363; (*GB) gi|225452466|ref|XP_002274501.1| (e_value=5e-55) PREDICTED: CASP-like protein At2g36330-like [Vitis vinifera];; (*SWP) sp|Q9FNE8|CSPLV_ARATH (e_value=3e-38) CASP-like protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1;; (*TAIR) AT5G40300.1 (e_value=2e-39) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:16110778-16112701 FORWARD LENGTH=270;; (*ITAG) Solyc02g086860.2.1 (e_value=6e-91) genomic_reference:SL2.40ch02 gene_region:44040990-44044579 transcript_region:SL2.40ch02:44040990..44044579- functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00044045g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0|0.5|0.66|0.5|4|0|99; (*GB) gi|18447915|dbj|BAB84323.1| (e_value=4e-22) ras-related protein RAB8-2 [Nicotiana tabacum];; (*SWP) sp|Q39433|RB1BV_BETVU (e_value=2e-22) Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1;; (*TAIR) AT3G46060.3 (e_value=4e-23) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=1e-24) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00045036g0007.1 protein AED:0.06 eAED:0.11 QI:208|0.5|0.57|1|0.33|0.71|7|257|383; (*GB) gi|315258239|gb|ADT91698.1| (e_value=0.0) mitogen activated protein kinase kinase [Nicotiana attenuata];; (*SWP) sp|Q9FJV0|M2K6_ARATH (e_value=1e-176) Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1;; (*TAIR) AT5G56580.1 (e_value=1e-177) | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase 6 | chr5:22904851-22906620 REVERSE LENGTH=356;; (*ITAG) Solyc03g119490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62138086-62141226 transcript_region:SL2.40ch03:62138086..62141226+ go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00045036g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|167 NbS00013596g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.6|0.33|0.83|0.6|0.5|6|0|544; (*GB) gi|296083497|emb|CBI23466.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=7e-115) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G16745.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:9412185-9414053 FORWARD LENGTH=542;; (*ITAG) Solyc08g078450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59419628-59422333 transcript_region:SL2.40ch08:59419628..59422333- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00013596g0009.1 protein AED:0.20 eAED:0.21 QI:0|0.8|0.5|1|0.8|0.83|6|0|730; (*GB) gi|147800889|emb|CAN71184.1| (e_value=0.0) hypothetical protein VITISV_033417 [Vitis vinifera];; (*TAIR) AT5G47400.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19229162-19232586 FORWARD LENGTH=862;; (*ITAG) Solyc08g078440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59413895-59418767 transcript_region:SL2.40ch08:59413895..59418767+ functional_description:"Genomic DNA chromosome 5 P1 clone MQL5 (AHRD V1 ***- Q9LVR9_ARATH)"; NbS00022991g0002.1 protein AED:0.79 eAED:0.86 QI:0|0|0|0.25|0.33|0.5|4|0|107; (*GB) gi|357466353|ref|XP_003603461.1| (e_value=6e-34) 50S ribosomal protein L4 [Medicago truncatula];; (*TAIR) AT2G20060.1 (e_value=1e-32) | Symbols: | Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300;; (*ITAG) Solyc12g088730.1.1 (e_value=5e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62423490-62429208 transcript_region:SL2.40ch12:62423490..62429208+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- Q8LE97_ARATH); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0003735,GO:0005515 NbS00001639g0017.1 protein AED:0.11 eAED:0.18 QI:1180|0.33|0.25|1|1|0.75|4|0|140; (*GB) gi|224119828|ref|XP_002331171.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9N5K2|RPAB1_CAEEL (e_value=2e-34) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=2 SV=1;; (*TAIR) AT3G22320.1 (e_value=5e-49) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=4e-51) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00001639g0018.1 protein AED:0.29 eAED:0.30 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|295; (*GB) gi|224072669|ref|XP_002303830.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80620.1 (e_value=2e-51) | Symbols: | S15/NS1, RNA-binding protein | chr1:30305404-30307182 FORWARD LENGTH=414;; (*ITAG) Solyc08g006840.2.1 (e_value=2e-100) genomic_reference:SL2.40ch08 gene_region:1373840-1381510 transcript_region:SL2.40ch08:1373840..1381510+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S15 (AHRD V1 *-*- A9TLD1_PHYPA); contains Interpro domain(s) IPR009068 S15/NS1, RNA-binding "; GO:0005840 NbS00001639g0019.1 protein AED:0.20 eAED:0.21 QI:0|0.90|0.83|0.91|0.54|0.58|12|658|323; (*GB) gi|297821086|ref|XP_002878426.1| (e_value=2e-136) O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9XGP7|OMT15_ORYSJ (e_value=8e-57) Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1;; (*TAIR) AT3G62000.1 (e_value=8e-136) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22959441-22961180 REVERSE LENGTH=278;; (*ITAG) Solyc08g006830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1365018-1370289 transcript_region:SL2.40ch08:1365018..1370289- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase 1 (AHRD V1 **** B6TR72_MAIZE); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00001639g0016.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|297738790|emb|CBI28035.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|P19388|RPAB1_HUMAN (e_value=1e-14) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4;; (*TAIR) AT3G22320.1 (e_value=5e-42) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=4e-49) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00001639g0014.1 protein AED:0.34 eAED:0.63 QI:30|0|0|1|0|0|2|0|75; (*GB) gi|147860532|emb|CAN81876.1| (e_value=3e-15) hypothetical protein VITISV_034528 [Vitis vinifera];; (*TAIR) AT1G80620.1 (e_value=3e-16) | Symbols: | S15/NS1, RNA-binding protein | chr1:30305404-30307182 FORWARD LENGTH=414;; (*ITAG) Solyc08g006840.2.1 (e_value=2e-17) genomic_reference:SL2.40ch08 gene_region:1373840-1381510 transcript_region:SL2.40ch08:1373840..1381510+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S15 (AHRD V1 *-*- A9TLD1_PHYPA); contains Interpro domain(s) IPR009068 S15/NS1, RNA-binding "; GO:0005840 NbS00031402g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|586; (*GB) gi|86212374|gb|ABC87760.1| (e_value=0.0) jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00031402g0009.1 protein AED:0.18 eAED:0.18 QI:331|0|0.5|0.5|1|1|2|831|105; (*ITAG) Solyc05g050340.2.1 (e_value=5e-47) genomic_reference:SL2.40ch05 gene_region:59599095-59601281 transcript_region:SL2.40ch05:59599095..59601281+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 6 (AHRD V1 *-*- C9DHZ5_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00031402g0012.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|3|0|195; (*GB) gi|325610485|gb|ADZ36436.1| (e_value=2e-55) NADH dehydrogenase subunit 5 [Polyspora chrysandra];; (*SWP) sp|P06265|NU5C_TOBAC (e_value=2e-55) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana tabacum GN=ndhF PE=3 SV=2;; (*ITAG) ATCG01010.1 (e_value=1e-46) | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=746;; (*ITAG) Solyc04g024570.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:13379779-13381186 transcript_region:SL2.40ch04:13379779..13381186+ go_terms:GO:0005840,GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit L (AHRD V1 ***- NUOL_NEIMA); contains Interpro domain(s) IPR003916 NADH:ubiquinone oxidoreductase, chain 5 "; GO:0005840,GO:0055114 NbS00025798g0005.1 protein AED:0.14 eAED:0.14 QI:27|0.8|0.66|0.83|1|1|6|322|441; (*GB) gi|225441209|ref|XP_002266542.1| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100257160 [Vitis vinifera];; (*TAIR) AT3G56720.2 (e_value=5e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. | chr3:21011354-21013264 FORWARD LENGTH=387;; (*ITAG) Solyc12g020000.1.1 (e_value=4e-150) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:12863185-12872133 transcript_region:SL2.40ch12:12863185..12872133- functional_description:"Arginine/serine-rich coiled-coil protein 2 (AHRD V1 *-*- RSRC2_DANRE)"; NbS00029900g0001.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|668; (*GB) gi|225427070|ref|XP_002275784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Vitis vinifera];; (*SWP) sp|Q9C6T2|PPR68_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1;; (*TAIR) AT1G31920.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11461864-11463684 REVERSE LENGTH=606;; (*ITAG) Solyc08g076150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57341681-57343533 transcript_region:SL2.40ch08:57341681..57343533- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGN9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00056446g0004.1 protein AED:0.20 eAED:0.22 QI:0|0.83|0.76|1|0.66|0.69|13|504|487; (*GB) gi|225426379|ref|XP_002271860.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform 2 [Vitis vinifera];; (*SWP) sp|C0LGH8|Y1634_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1;; (*TAIR) AT1G63430.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23522896-23526451 FORWARD LENGTH=688;; (*ITAG) Solyc08g080830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61177982-61182919 transcript_region:SL2.40ch08:61177982..61182919- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012381g0012.1 protein AED:0.13 eAED:0.13 QI:52|0.88|0.9|1|0.77|0.9|10|435|236; (*GB) gi|297741498|emb|CBI32630.3| (e_value=2e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZ06|GSTL3_ARATH (e_value=2e-107) Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1;; (*TAIR) AT5G02790.1 (e_value=1e-108) | Symbols: GSTL3 | Glutathione S-transferase family protein | chr5:632877-634858 FORWARD LENGTH=235;; (*ITAG) Solyc09g007150.2.1 (e_value=1e-140) genomic_reference:SL2.40ch09 gene_region:775043-778675 transcript_region:SL2.40ch09:775043..778675+ go_terms:GO:0045174 functional_description:"Glutathione S-transferase (AHRD V1 **** Q76KW1_PEA); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0045174 NbS00012381g0008.1 protein AED:0.17 eAED:0.17 QI:164|0.75|0.6|1|1|1|5|0|457; (*GB) gi|225439795|ref|XP_002276631.1| (e_value=1e-161) PREDICTED: probable protein phosphatase 2C 38-like [Vitis vinifera];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=1e-153) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=1e-154) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00012381g0010.1 protein AED:0.04 eAED:0.04 QI:156|1|1|1|0.75|1|5|1810|200; (*GB) gi|356505170|ref|XP_003521365.1| (e_value=5e-42) PREDICTED: uncharacterized protein LOC100816435 [Glycine max];; (*TAIR) AT5G02770.1 (e_value=4e-35) | Symbols: | unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | chr5:628101-629168 REVERSE LENGTH=214;; (*ITAG) Solyc09g007090.2.1 (e_value=3e-86) genomic_reference:SL2.40ch09 gene_region:732671-734752 transcript_region:SL2.40ch09:732671..734752- functional_description:"Unknown Protein (AHRD V1)"; NbS00004964g0003.1 protein AED:0.22 eAED:0.23 QI:1305|0.94|0.89|1|0.66|0.63|19|0|302; (*GB) gi|225423672|ref|XP_002276491.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera];; (*SWP) sp|Q8C754|VPS52_MOUSE (e_value=7e-47) Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1;; (*TAIR) AT1G71270.1 (e_value=0.0) | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707;; (*ITAG) Solyc02g094090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49292983-49310119 transcript_region:SL2.40ch02:49292983..49310119- functional_description:"Vacuolar protein sorting 52 (AHRD V1 **-- Q5TJF1_CANFA); contains Interpro domain(s) IPR007258 Vps52/Sac2 "; NbS00021609g0006.1 protein AED:0.07 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|261; (*GB) gi|237664619|gb|ACR09748.1| (e_value=1e-122) DIV3B protein [Heptacodium miconioides];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=3e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=1e-108) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc09g014250.2.1 (e_value=3e-158) genomic_reference:SL2.40ch09 gene_region:5739857-5741930 transcript_region:SL2.40ch09:5739857..5741930+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00027983g0004.1 protein AED:0.35 eAED:0.35 QI:329|1|0.75|1|1|1|4|0|230; (*GB) gi|81076617|gb|ABB55396.1| (e_value=2e-105) unknown [Solanum tuberosum];; (*TAIR) AT1G20225.1 (e_value=1e-71) | Symbols: | Thioredoxin superfamily protein | chr1:7007966-7009318 REVERSE LENGTH=233;; (*ITAG) Solyc06g062280.2.1 (e_value=1e-106) genomic_reference:SL2.40ch06 gene_region:35675303-35677937 transcript_region:SL2.40ch06:35675303..35677937+ functional_description:"DSBA oxidoreductase (AHRD V1 ***- A4T4K6_MYCGI); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00027829g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|438; (*GB) gi|357447603|ref|XP_003594077.1| (e_value=1e-93) BSD domain-containing protein [Medicago truncatula];; (*SWP) sp|Q5ZIK6|BSDC1_CHICK (e_value=3e-19) BSD domain-containing protein 1 OS=Gallus gallus GN=BSDC1 PE=2 SV=1;; (*TAIR) AT4G13110.1 (e_value=3e-59) | Symbols: | BSD domain-containing protein | chr4:7641507-7642457 FORWARD LENGTH=316;; (*ITAG) Solyc01g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72070935-72072591 transcript_region:SL2.40ch01:72070935..72072591- functional_description:"BSD domain containing 1 (AHRD V1 *-*- A9JT15_DANRE); contains Interpro domain(s) IPR005607 BSD "; NbS00027829g0009.1 protein AED:0.21 eAED:0.22 QI:169|0.9|0.90|1|0.6|0.81|11|238|347; (*GB) gi|359477465|ref|XP_002279174.2| (e_value=2e-177) PREDICTED: calcium-binding protein 39-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q06138|CAB39_MOUSE (e_value=1e-75) Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=2;; (*TAIR) AT5G18940.2 (e_value=8e-169) | Symbols: | Mo25 family protein | chr5:6325972-6328097 FORWARD LENGTH=343;; (*ITAG) Solyc01g080350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72075146-72082732 transcript_region:SL2.40ch01:72075146..72082732- go_terms:GO:0005515 functional_description:"Calcium binding protein 39-like (AHRD V1 **-* A0JPC1_XENTR); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00027829g0010.1 protein AED:0.09 eAED:0.09 QI:186|1|1|1|0.25|0.4|5|159|234; (*GB) gi|359477469|ref|XP_002279368.2| (e_value=3e-111) PREDICTED: BI1-like protein-like [Vitis vinifera];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=2e-94) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT4G15470.1 (e_value=1e-95) | Symbols: | Bax inhibitor-1 family protein | chr4:8843661-8845505 FORWARD LENGTH=256;; (*ITAG) Solyc01g080330.2.1 (e_value=1e-129) genomic_reference:SL2.40ch01 gene_region:72068095-72070591 transcript_region:SL2.40ch01:72068095..72070591+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TGH7_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00010803g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.75|0.8|5|193|454; (*GB) gi|224112483|ref|XP_002316205.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55990.1 (e_value=0.0) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc03g096030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51288017-51290350 transcript_region:SL2.40ch03:51288017..51290350- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00010803g0003.1 protein AED:0.12 eAED:0.12 QI:506|1|0.66|1|0|0|3|0|523; (*GB) gi|359486472|ref|XP_002274097.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248412 [Vitis vinifera];; (*TAIR) AT5G05350.1 (e_value=0.0) | Symbols: | PLAC8 family protein | chr5:1585757-1587337 FORWARD LENGTH=526;; (*ITAG) Solyc06g048790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28213018-28214535 transcript_region:SL2.40ch06:28213018..28214535+ go_terms:GO:0005515 functional_description:"Os12g0109700 protein (Fragment) (AHRD V1 *-*- C7JA22_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; GO:0005515 NbS00010803g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|10241935|dbj|BAB13711.1| (e_value=5e-72) elicitor inducible protein [Nicotiana tabacum];; (*SWP) sp|P20144|WUN1_SOLTU (e_value=2e-55) Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1;; (*TAIR) AT3G10985.1 (e_value=2e-36) | Symbols: SAG20, WI12, ATWI-12 | senescence associated gene 20 | chr3:3442776-3443108 FORWARD LENGTH=110;; (*ITAG) Solyc06g048820.1.1 (e_value=1e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:28279621-28279947 transcript_region:SL2.40ch06:28279621..28279947+ functional_description:"Wound-induced protein 1 (AHRD V1 ***- WUN1_SOLTU); contains Interpro domain(s) IPR016533 Wound-induced protein, Wun1, subgroup "; NbS00018577g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|375; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=1e-52) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q3E7I6|GDL11_ARATH (e_value=1e-46) GDSL esterase/lipase At1g28650 OS=Arabidopsis thaliana GN=At1g28650 PE=2 SV=1;; (*TAIR) AT1G28650.1 (e_value=1e-47) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10069547-10071082 REVERSE LENGTH=385;; (*ITAG) Solyc01g108640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00018399g0024.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|88; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=8e-53) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=2e-54) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT3G10890.1 (e_value=7e-32) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:3407455-3409000 REVERSE LENGTH=414;; (*ITAG) Solyc00g231680.1.1 (e_value=2e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00018399g0022.1 protein AED:0.07 eAED:0.07 QI:362|1|1|1|0.33|0.25|4|1081|590; (*GB) gi|297735213|emb|CBI17575.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU29|PP139_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2;; (*TAIR) AT2G01390.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:172256-174137 FORWARD LENGTH=577;; (*ITAG) Solyc01g008480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2569875-2573305 transcript_region:SL2.40ch01:2569875..2573305+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018399g0005.1 protein AED:0.12 eAED:0.12 QI:610|0.57|0.5|1|0.57|0.5|8|0|1862; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=7e-152) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-105) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=5e-42) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g005130.1.1 (e_value=1e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:118314-124329 transcript_region:SL2.40ch05:118314..124329- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00018399g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|152; (*ITAG) Solyc04g024520.2.1 (e_value=1e-37) genomic_reference:SL2.40ch04 gene_region:13142206-13146433 transcript_region:SL2.40ch04:13142206..13146433+ functional_description:"AT5g13970/MAC12_6 (AHRD V1 ***- Q9FFX8_ARATH)"; NbS00018399g0016.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|80; (*ITAG) Solyc05g012740.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5910570-5914278 transcript_region:SL2.40ch05:5910570..5914278- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00018399g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.6|1|1|5|0|625; (*GB) gi|190607705|gb|ACE79511.1| (e_value=1e-36) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-35) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-17) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007350.1.1 (e_value=3e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00018399g0013.1 protein AED:0.58 eAED:0.65 QI:0|0|0|0.75|1|1|4|0|160; (*GB) gi|113205383|gb|AAU93590.2| (e_value=2e-21) Late blight resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=5e-21) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*ITAG) Solyc05g012740.1.1 (e_value=4e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5910570-5914278 transcript_region:SL2.40ch05:5910570..5914278- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00018399g0023.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|2|0|644; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=7e-29) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*SWP) sp|Q63425|PRAX_RAT (e_value=3e-13) Periaxin OS=Rattus norvegicus GN=Prx PE=1 SV=2;; (*TAIR) AT5G09530.1 (e_value=3e-26) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g100110.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65299562-65300815 transcript_region:SL2.40ch12:65299562..65300815+ functional_description:"Extensin-like protein Ext1 (AHRD V1 ***- Q8VWM5_SOLLC)"; NbS00035520g0015.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|1|1|4|0|534; (*GB) gi|224061387|ref|XP_002300454.1| (e_value=6e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6IE81|JADE1_HUMAN (e_value=3e-32) Protein Jade-1 OS=Homo sapiens GN=PHF17 PE=1 SV=1;; (*TAIR) AT1G17030.1 (e_value=2e-110) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc07g062100.2.1 (e_value=3e-154) genomic_reference:SL2.40ch07 gene_region:62137754-62139235 transcript_region:SL2.40ch07:62137754..62139235- go_terms:GO:0008270 functional_description:"Bromodomain and PHD finger containing 1 (AHRD V1 *--- B2RRD7_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00035520g0004.1 protein AED:0.34 eAED:0.35 QI:0|1|0.75|1|1|1|4|0|319; (*GB) gi|359386140|gb|AEV43359.1| (e_value=3e-124) structural maintenance of chromosomes domain-containing protein [Citrus sinensis];; (*TAIR) AT3G14750.1 (e_value=2e-91) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). | chr3:4953765-4955373 REVERSE LENGTH=331;; (*ITAG) Solyc07g062110.2.1 (e_value=2e-176) genomic_reference:SL2.40ch07 gene_region:62145377-62148028 transcript_region:SL2.40ch07:62145377..62148028- functional_description:"Myosin-like protein (AHRD V1 **-- Q7XIR7_ORYSJ)"; NbS00035520g0003.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.77|1|1|1|9|603|544; (*GB) gi|255575145|ref|XP_002528477.1| (e_value=0.0) big map kinase/bmk, putative [Ricinus communis];; (*SWP) sp|Q9LUC3|MPK19_ARATH (e_value=0.0) Mitogen-activated protein kinase 19 OS=Arabidopsis thaliana GN=MPK19 PE=2 SV=2;; (*TAIR) AT3G14720.1 (e_value=0.0) | Symbols: ATMPK19, MPK19 | MAP kinase 19 | chr3:4946057-4948906 FORWARD LENGTH=598;; (*ITAG) Solyc07g062080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62129987-62135063 transcript_region:SL2.40ch07:62129987..62135063+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 18 (AHRD V1 **** D7KKI7_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00046602g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.9|0.90|1|1|1|11|352|426; (*GB) gi|359487445|ref|XP_002270525.2| (e_value=0.0) PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera];; (*SWP) sp|Q6NUT3|MFS12_HUMAN (e_value=6e-46) Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2;; (*TAIR) AT2G44280.2 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:18301563-18303927 REVERSE LENGTH=462;; (*ITAG) Solyc01g073660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70277708-70286071 transcript_region:SL2.40ch01:70277708..70286071- functional_description:"Uncharacterized MFS-type transporter C19orf28 (AHRD V1 **-- CS028_HUMAN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00061721g0004.1 protein AED:0.29 eAED:0.29 QI:205|1|0.83|1|0.2|0.33|6|0|230; (*ITAG) Solyc11g044350.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35477781-35484652 transcript_region:SL2.40ch11:35477781..35484652- go_terms:GO:0005515 functional_description:"WW domain containing adaptor with coiled-coil (AHRD V1 *-*- Q5U4Q0_XENTR); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00005294g0003.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|1|1|2|0|115; (*ITAG) Solyc11g068380.1.1 (e_value=4e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50220274-50221120 transcript_region:SL2.40ch11:50220274..50221120+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025817g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|461; (*GB) gi|334902911|gb|AEH25587.1| (e_value=1e-25) transposase [Solanum demissum];; (*ITAG) Solyc04g039710.1.1 (e_value=7e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00025817g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.42|0.37|1|0.57|0.37|8|0|1103; (*GB) gi|2370331|emb|CAA74992.1| (e_value=0.0) phytochrome B [Nicotiana plumbaginifolia];; (*SWP) sp|P29130|PHYB_TOBAC (e_value=0.0) Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2;; (*TAIR) AT2G18790.1 (e_value=0.0) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc01g059870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61760931-61767869 transcript_region:SL2.40ch01:61760931..61767869- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B1"; GO:0042802,GO:0009883 NbS00025817g0009.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|106; (*ITAG) Solyc00g047190.1.1 (e_value=6e-38) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:13506070-13506387 transcript_region:SL2.40ch00:13506070..13506387+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025817g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|0|0|2|0|74; (*ITAG) Solyc00g047190.1.1 (e_value=1e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:13506070-13506387 transcript_region:SL2.40ch00:13506070..13506387+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004501g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|1|1|3|0|315; (*GB) gi|365222874|gb|AEW69789.1| (e_value=2e-123) Hop-interacting protein THI018 [Solanum lycopersicum];; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=4e-62) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=3e-63) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc08g076820.2.1 (e_value=5e-126) genomic_reference:SL2.40ch08 gene_region:57896589-57899605 transcript_region:SL2.40ch08:57896589..57899605+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00004501g0009.1 protein AED:0.75 eAED:0.76 QI:0|0|0|0.5|1|0.5|4|0|114; (*ITAG) Solyc08g076810.2.1 (e_value=2e-16) genomic_reference:SL2.40ch08 gene_region:57876899-57889537 transcript_region:SL2.40ch08:57876899..57889537+ go_terms:GO:0005515,GO:0032216 functional_description:"GPI-anchored wall transfer protein 1 (AHRD V1 ***- C4JY68_UNCRE); contains Interpro domain(s) IPR009447 GWT1 "; GO:0005515,GO:0032216 NbS00060508g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=8e-14) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc01g056950.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00003955g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.25|1|0.66|0|4|361|272; (*GB) gi|359488881|ref|XP_003633838.1| (e_value=2e-113) PREDICTED: ABC transporter B family member 15-like [Vitis vinifera];; (*SWP) sp|Q9LHD1|AB15B_ARATH (e_value=5e-101) ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1;; (*TAIR) AT3G28345.1 (e_value=3e-102) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc02g087410.2.1 (e_value=9e-130) genomic_reference:SL2.40ch02 gene_region:44432190-44438477 transcript_region:SL2.40ch02:44432190..44438477- go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00044508g0004.1 protein AED:0.28 eAED:0.30 QI:85|0.85|0.75|1|0.71|0.75|8|0|212; (*GB) gi|225454745|ref|XP_002273656.1| (e_value=5e-93) PREDICTED: DNA replication complex GINS protein PSF2 [Vitis vinifera];; (*SWP) sp|Q9C7A8|PSF2_ARATH (e_value=3e-78) DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2;; (*TAIR) AT3G12530.1 (e_value=2e-79) | Symbols: PSF2 | PSF2 | chr3:3972604-3973864 REVERSE LENGTH=210;; (*ITAG) Solyc05g054430.2.1 (e_value=3e-129) genomic_reference:SL2.40ch05 gene_region:63509079-63513645 transcript_region:SL2.40ch05:63509079..63513645+ go_terms:GO:0005515 functional_description:"DNA replication complex GINS protein PSF2 (AHRD V1 ***- B4FLH9_MAIZE); contains Interpro domain(s) IPR016906 GINS complex, PSF2 component, subgroup "; GO:0005515 NbS00036924g0003.1 protein AED:0.31 eAED:0.31 QI:0|1|0.83|1|1|0.83|6|0|393; (*GB) gi|193784669|dbj|BAG50821.1| (e_value=0.0) MAP kinase [Nicotiana benthamiana];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=0.0) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc08g014420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00046002g0001.1 protein AED:0.00 eAED:0.00 QI:971|1|1|1|0.33|0|4|187|267; (*ITAG) Solyc02g087450.2.1 (e_value=3e-102) genomic_reference:SL2.40ch02 gene_region:44467746-44471198 transcript_region:SL2.40ch02:44467746..44471198- functional_description:"Unknown Protein (AHRD V1)"; NbS00046002g0007.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|0|0|2|0|154; (*ITAG) Solyc02g087440.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:44464373-44465395 transcript_region:SL2.40ch02:44464373..44465395- functional_description:"Unknown Protein (AHRD V1)"; NbS00043925g0027.1 protein AED:0.09 eAED:0.09 QI:267|0.75|0.77|1|0.62|0.66|9|420|279; (*GB) gi|359482807|ref|XP_002277513.2| (e_value=1e-112) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=2e-80) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=1e-95) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc03g121820.2.1 (e_value=8e-164) genomic_reference:SL2.40ch03 gene_region:63912455-63918775 transcript_region:SL2.40ch03:63912455..63918775+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00043925g0028.1 protein AED:0.21 eAED:0.21 QI:218|0.77|0.8|1|0.77|0.7|10|206|498; (*GB) gi|297743770|emb|CBI36653.3| (e_value=5e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05950.1 (e_value=2e-31) | Symbols: | unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:1804573-1807471 REVERSE LENGTH=627;; (*ITAG) Solyc03g121850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63938734-63953260 transcript_region:SL2.40ch03:63938734..63953260+ functional_description:"Aleurone layer morphogenesis protein (AHRD V1 *-*- Q7XZV4_ORYSJ)"; NbS00043925g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|219; (*GB) gi|224122458|ref|XP_002330486.1| (e_value=2e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=6e-135) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=5e-136) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc03g121830.1.1 (e_value=1e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63926516-63927811 transcript_region:SL2.40ch03:63926516..63927811+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00043925g0003.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|224096904|ref|XP_002334657.1| (e_value=6e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=2e-27) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=1e-28) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc06g062810.1.1 (e_value=1e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36018591-36019889 transcript_region:SL2.40ch06:36018591..36019889+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00043925g0008.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|586; (*GB) gi|297743056|emb|CBI35923.3| (e_value=8e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G72790.1 (e_value=4e-20) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:27394848-27396533 FORWARD LENGTH=561;; (*ITAG) Solyc03g121890.1.1 (e_value=4e-177) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:63973074-63974825 transcript_region:SL2.40ch03:63973074..63974825+ functional_description:"Os01g0584100 protein (Fragment) (AHRD V1 *-*- Q0JLP7_ORYSJ)"; NbS00043925g0017.1 protein AED:0.10 eAED:0.23 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|224073492|ref|XP_002304103.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11970.1 (e_value=2e-12) | Symbols: | Protein of unknown function (DUF3511) | chr5:3863289-3863606 REVERSE LENGTH=105;; (*ITAG) Solyc12g049210.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46070245-46070568 transcript_region:SL2.40ch12:46070245..46070568- functional_description:"Unknown Protein (AHRD V1)"; NbS00043925g0024.1 protein AED:0.33 eAED:0.33 QI:50|0.8|0.83|1|1|1|6|409|304; (*GB) gi|255560719|ref|XP_002521373.1| (e_value=1e-83) transcription factor, putative [Ricinus communis];; (*SWP) sp|F4I7L1|TRB4_ARATH (e_value=2e-57) Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2;; (*TAIR) AT1G72740.2 (e_value=2e-58) | Symbols: | Homeodomain-like/winged-helix DNA-binding family protein | chr1:27380499-27382687 REVERSE LENGTH=281;; (*ITAG) Solyc03g121840.2.1 (e_value=4e-86) genomic_reference:SL2.40ch03 gene_region:63928744-63935288 transcript_region:SL2.40ch03:63928744..63935288- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone H1-like protein (AHRD V1 *-*- Q8W119_MAIZE); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00043925g0025.1 protein AED:0.34 eAED:0.39 QI:514|0.85|0.75|1|0.57|0.62|8|0|117; (*GB) gi|168050362|ref|XP_001777628.1| (e_value=7e-21) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q5RDV8|METL6_PONAB (e_value=2e-15) Methyltransferase-like protein 6 OS=Pongo abelii GN=METTL6 PE=2 SV=1;; (*TAIR) AT2G26200.1 (e_value=3e-21) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11152875-11156330 FORWARD LENGTH=565;; (*ITAG) Solyc03g121870.2.1 (e_value=1e-27) genomic_reference:SL2.40ch03 gene_region:63958575-63961893 transcript_region:SL2.40ch03:63958575..63961893+ go_terms:GO:0004402 functional_description:"Methyltransferase-like protein (AHRD V1 ***- B6K6V3_SCHJY); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0004402 NbS00043925g0002.1 protein AED:0.77 eAED:0.89 QI:63|0|0.5|1|0|0.5|2|0|99 NbS00004897g0006.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|525; (*GB) gi|255570065|ref|XP_002525995.1| (e_value=0.0) ankyrin repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9ZU96|Y2168_ARATH (e_value=0.0) Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1;; (*TAIR) AT2G01680.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:306597-308427 FORWARD LENGTH=532;; (*ITAG) Solyc01g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:241288-245649 transcript_region:SL2.40ch01:241288..245649- go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00004897g0007.1 protein AED:0.14 eAED:0.14 QI:58|0.94|0.95|1|0.73|0.75|20|386|728; (*GB) gi|255570069|ref|XP_002525997.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q68F38|VAC14_XENLA (e_value=2e-149) Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc05g017860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:18730429-18754023 transcript_region:SL2.40ch05:18730429..18754023- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00005148g0001.1 protein AED:0.00 eAED:0.06 QI:109|1|0.5|1|0|0.5|2|0|617; (*GB) gi|224099789|ref|XP_002311619.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SKY8|HSP7H_ARATH (e_value=0.0) Heat shock 70 kDa protein 8 OS=Arabidopsis thaliana GN=HSP70-8 PE=2 SV=1;; (*TAIR) AT2G32120.2 (e_value=0.0) | Symbols: HSP70T-2 | heat-shock protein 70T-2 | chr2:13651720-13653411 REVERSE LENGTH=563;; (*ITAG) Solyc09g075950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63079410-63081140 transcript_region:SL2.40ch09:63079410..63081140+ go_terms:GO:0042623 functional_description:"Heat shock protein 1 (AHRD V1 ***- B6SXY0_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623 NbS00005148g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|255542346|ref|XP_002512236.1| (e_value=4e-83) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G28150.1 (e_value=5e-63) | Symbols: | Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289;; (*ITAG) Solyc09g075960.1.1 (e_value=3e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63083271-63084182 transcript_region:SL2.40ch09:63083271..63084182- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00023819g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|101 NbS00035104g0007.1 protein AED:0.11 eAED:0.11 QI:345|1|1|1|0.81|0.91|12|331|311; (*GB) gi|225440552|ref|XP_002276211.1| (e_value=0.0) PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase [Vitis vinifera];; (*TAIR) AT3G54020.1 (e_value=3e-180) | Symbols: AtIPCS1 | Arabidopsis Inositol phosphorylceramide synthase 1 | chr3:20006098-20008020 FORWARD LENGTH=305;; (*ITAG) Solyc10g084990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63661451-63664805 transcript_region:SL2.40ch10:63661451..63664805+ functional_description:"Phosphatidylcholine:ceramide cholinephosphotransferase 1 (AHRD V1 *--- SMS1_RAT)"; NbS00035104g0006.1 protein AED:0.14 eAED:0.14 QI:260|0.87|0.88|1|1|1|9|177|410; (*GB) gi|225440554|ref|XP_002276280.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=4e-174) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.2 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23822499 REVERSE LENGTH=359;; (*ITAG) Solyc10g085000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63669940-63674284 transcript_region:SL2.40ch10:63669940..63674284+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00043519g0007.1 protein AED:0.52 eAED:0.52 QI:0|0.5|0|0.66|0.5|0.66|3|0|133; (*GB) gi|40287540|gb|AAR83884.1| (e_value=4e-80) ly200 protein [Capsicum annuum];; (*SWP) sp|P49211|RL321_ARATH (e_value=4e-76) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=3e-77) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc08g006900.2.1 (e_value=8e-82) genomic_reference:SL2.40ch08 gene_region:1461250-1464221 transcript_region:SL2.40ch08:1461250..1464221- go_terms:GO:0005840 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR001515 Ribosomal protein L32e "; GO:0005840 NbS00043519g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.4|0.16|1|1|1|6|0|496; (*GB) gi|54036492|sp|Q6VAF9.1|TBA4_GOSHI (e_value=0.0) RecName: Full=Tubulin alpha-4 chain; AltName: Full=Alpha-4-tubulin;; (*SWP) sp|Q6VAF9|TBA4_GOSHI (e_value=0.0) Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1;; (*TAIR) AT4G14960.1 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00017805g0012.1 protein AED:0.24 eAED:0.24 QI:236|1|1|1|1|1|10|640|418; (*GB) gi|158635126|gb|ABW76425.1| (e_value=0.0) branched-chain aminotransferase [Nicotiana benthamiana];; (*SWP) sp|Q9FYA6|BCAT5_ARATH (e_value=0.0) Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1;; (*TAIR) AT5G65780.1 (e_value=0.0) | Symbols: ATBCAT-5 | branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) | chr5:26316418-26318585 FORWARD LENGTH=415;; (*ITAG) Solyc02g091970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47756090-47762810 transcript_region:SL2.40ch02:47756090..47762810- go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q9SNY8_SOLTU); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00017805g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|329; (*GB) gi|296090689|emb|CBI41089.3| (e_value=4e-78) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=4e-72) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT3G49690.1 (e_value=3e-73) | Symbols: RAX3, MYB84, ATMYB84 | myb domain protein 84 | chr3:18427941-18429100 FORWARD LENGTH=310;; (*ITAG) Solyc02g091980.1.1 (e_value=3e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47768960-47770244 transcript_region:SL2.40ch02:47768960..47770244+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00017805g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.85|0.87|1|1|1|8|259|954; (*GB) gi|284807022|dbj|BAI67716.1| (e_value=0.0) nuclear matrix constituent protein 2 [Apium graveolens];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=0.0) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT5G65770.3 (e_value=0.0) | Symbols: LINC4 | little nuclei4 | chr5:26311587-26315610 FORWARD LENGTH=1010;; (*ITAG) Solyc02g091960.2.1 (e_value=1e-173) genomic_reference:SL2.40ch02 gene_region:47749109-47755539 transcript_region:SL2.40ch02:47749109..47755539+ functional_description:"Nuclear matrix constituent protein 2 (AHRD V1 ***- D2YZU6_APIGR)"; NbS00017805g0009.1 protein AED:0.08 eAED:0.17 QI:369|0.66|0.5|1|0.33|0|4|0|109; (*GB) gi|225430654|ref|XP_002268225.1| (e_value=5e-27) PREDICTED: protein PIR-like [Vitis vinifera];; (*SWP) sp|Q5S2C3|PIR_ARATH (e_value=1e-22) Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2;; (*TAIR) AT5G18410.2 (e_value=1e-23) | Symbols: PIR, KLK, PIR121, SRA1, PIRP | transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1282;; (*ITAG) Solyc11g013280.1.1 (e_value=7e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6186161-6211407 transcript_region:SL2.40ch11:6186161..6211407- functional_description:"Cytoplasmic FMR1 interacting protein 2 (AHRD V1 ***- A5A5E1_DANRE); contains Interpro domain(s) IPR008081 Cytoplasmic FMR1-interacting "; NbS00000001g0012.1 protein AED:0.23 eAED:0.30 QI:0|0|0|1|1|0.66|3|0|220; (*GB) gi|147864691|emb|CAN84072.1| (e_value=1e-141) hypothetical protein VITISV_003982 [Vitis vinifera];; (*SWP) sp|Q43870|APS2_ARATH (e_value=4e-142) ATP sulfurylase 2 OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1;; (*TAIR) AT1G19920.1 (e_value=3e-143) | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr1:6914835-6916657 REVERSE LENGTH=476;; (*ITAG) Solyc03g005260.2.1 (e_value=7e-128) genomic_reference:SL2.40ch03 gene_region:148411-153101 transcript_region:SL2.40ch03:148411..153101- go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00000001g0013.1 protein AED:0.31 eAED:0.35 QI:0|0.5|0.33|1|0.37|0.44|9|306|537; (*GB) gi|147798203|emb|CAN62777.1| (e_value=8e-113) hypothetical protein VITISV_019372 [Vitis vinifera];; (*SWP) sp|Q9V8W3|RABEP_DROME (e_value=2e-18) Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1;; (*TAIR) AT3G06540.1 (e_value=4e-100) | Symbols: REP, AthREP | Rab escort protein | chr3:2035201-2037662 REVERSE LENGTH=563;; (*ITAG) Solyc02g082730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40955269-40962065 transcript_region:SL2.40ch02:40955269..40962065+ go_terms:GO:0017137,GO:0004663 functional_description:"Rab gdp-dissociation inhibitor (AHRD V1 **** Q17D49_AEDAE); contains Interpro domain(s) IPR016664 Rab protein geranylgeranyltransferase component A, eukaryota "; GO:0017137,GO:0004663 NbS00012748g0005.1 protein AED:0.40 eAED:0.44 QI:107|0|0.5|1|1|1|2|0|178; (*GB) gi|255580088|ref|XP_002530877.1| (e_value=6e-51) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55265.1 (e_value=5e-47) | Symbols: | Protein of unknown function, DUF538 | chr1:20617326-20617853 FORWARD LENGTH=175;; (*ITAG) Solyc01g021670.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:32538796-32541485 transcript_region:SL2.40ch01:32538796..32541485+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00030418g0003.1 protein AED:0.12 eAED:0.13 QI:0|1|0.5|1|1|1|2|332|716; (*GB) gi|359488843|ref|XP_002274441.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254332 [Vitis vinifera];; (*SWP) sp|Q6AZT7|NPHP3_XENLA (e_value=3e-12) Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1;; (*TAIR) AT3G27960.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:10380513-10382593 REVERSE LENGTH=663;; (*ITAG) Solyc02g086840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44022590-44025483 transcript_region:SL2.40ch02:44022590..44025483- go_terms:GO:0005975,GO:0005488 functional_description:"Kinesin light chain-like protein (AHRD V1 ***- D2DWB2_PHAVU); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005975,GO:0005488 NbC26186313g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|359482860|ref|XP_003632855.1| (e_value=5e-56) PREDICTED: dof zinc finger protein DOF1.7-like [Vitis vinifera];; (*SWP) sp|O82155|DOF17_ARATH (e_value=7e-33) Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1;; (*TAIR) AT1G51700.1 (e_value=6e-34) | Symbols: ADOF1, DOF1 | DOF zinc finger protein 1 | chr1:19174266-19174850 FORWARD LENGTH=194;; (*ITAG) Solyc06g062520.1.1 (e_value=3e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35829288-35829866 transcript_region:SL2.40ch06:35829288..35829866- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 4 (AHRD V1 *-*- A5HWF3_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00054677g0006.1 protein AED:0.18 eAED:0.18 QI:319|1|1|1|1|1|2|290|320; (*GB) gi|297743098|emb|CBI35965.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13780.1 (e_value=1e-41) | Symbols: | SMAD/FHA domain-containing protein | chr3:4525108-4526214 FORWARD LENGTH=309;; (*ITAG) Solyc06g062700.2.1 (e_value=3e-75) genomic_reference:SL2.40ch06 gene_region:35964295-35965844 transcript_region:SL2.40ch06:35964295..35965844+ functional_description:"Genomic DNA chromosome 3 P1 clone MMM17 (AHRD V1 ***- Q9LIC1_ARATH); contains Interpro domain(s) IPR008984 SMAD/FHA domain "; NbS00054677g0007.1 protein AED:0.21 eAED:0.21 QI:676|0.66|0.5|1|0.33|0.5|4|0|511; (*GB) gi|563623|emb|CAA57772.1| (e_value=4e-157) putative DNA/RNA binding protein [Solanum tuberosum];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=5e-97) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT1G55110.1 (e_value=6e-106) | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560406-20562625 REVERSE LENGTH=455;; (*ITAG) Solyc06g062670.2.1 (e_value=8e-163) genomic_reference:SL2.40ch06 gene_region:35943354-35946536 transcript_region:SL2.40ch06:35943354..35946536- go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M7Z8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00047684g0004.1 protein AED:0.22 eAED:0.22 QI:63|0.90|0.91|1|0.54|0.66|12|518|528; (*GB) gi|225447125|ref|XP_002271129.1| (e_value=0.0) PREDICTED: probable plastidic glucose transporter 1-like [Vitis vinifera];; (*SWP) sp|Q0WVE9|PLST1_ARATH (e_value=0.0) Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2;; (*TAIR) AT1G05030.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:1438324-1441385 REVERSE LENGTH=524;; (*ITAG) Solyc07g049310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56883036-56891636 transcript_region:SL2.40ch07:56883036..56891636+ go_terms:GO:0015519,GO:0008506 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519,GO:0008506 NbS00004831g0015.1 protein AED:0.00 eAED:0.00 QI:182|1|0.75|1|0.33|0.25|4|0|79; (*GB) gi|297849098|ref|XP_002892430.1| (e_value=1e-17) hypothetical protein ARALYDRAFT_888027 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G28310.3 (e_value=8e-19) | Symbols: | Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374;; (*ITAG) Solyc11g069550.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51250786-51256286 transcript_region:SL2.40ch11:51250786..51256286- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00004831g0008.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|40287508|gb|AAR83868.1| (e_value=9e-100) 60S ribosomal protein L12 [Capsicum annuum];; (*SWP) sp|O50003|RL12_PRUAR (e_value=4e-96) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=3e-96) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc11g069440.1.1 (e_value=2e-103) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51106221-51106721 transcript_region:SL2.40ch11:51106221..51106721- go_terms:GO:0005840 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005840 NbS00004831g0016.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.16|0.83|0.4|0.16|6|0|180; (*GB) gi|255578135|ref|XP_002529937.1| (e_value=1e-78) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=7e-62) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT2G28315.1 (e_value=1e-75) | Symbols: | Nucleotide/sugar transporter family protein | chr2:12088896-12090570 FORWARD LENGTH=342;; (*ITAG) Solyc11g069540.1.1 (e_value=6e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51242625-51246521 transcript_region:SL2.40ch11:51242625..51246521- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00004831g0017.1 protein AED:0.12 eAED:0.12 QI:294|0.94|0.95|1|0.78|0.8|20|1059|848; (*GB) gi|255578147|ref|XP_002529943.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5H9R7|PP6R3_HUMAN (e_value=2e-60) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2;; (*TAIR) AT1G07990.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr1:2477413-2482898 FORWARD LENGTH=802;; (*ITAG) Solyc00g006490.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:4297199-4316361 transcript_region:SL2.40ch00:4297199..4316361+ functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 **-- SAPS3_HUMAN); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00033822g0010.1 protein AED:0.15 eAED:0.15 QI:544|0.75|0.4|1|0|0|5|0|257; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=4e-102) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=1e-87) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=1e-88) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=2e-126) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00033822g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.33|1|0.8|0.66|6|0|461; (*GB) gi|356514292|ref|XP_003525840.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100794824 [Glycine max];; (*SWP) sp|F4JMI5|GUX7_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana GN=PGSIP7 PE=3 SV=1;; (*TAIR) AT4G16600.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr4:9350039-9352707 FORWARD LENGTH=494;; (*ITAG) Solyc08g078650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00057420g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0|1|1|1|4|0|267; (*GB) gi|356496709|ref|XP_003517208.1| (e_value=6e-75) PREDICTED: mitochondrial chaperone BCS1-like isoform 1 [Glycine max];; (*SWP) sp|P32839|BCS1_YEAST (e_value=2e-12) Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2;; (*TAIR) AT5G17760.1 (e_value=4e-66) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:5860591-5862301 REVERSE LENGTH=505;; (*ITAG) Solyc02g084910.2.1 (e_value=3e-79) genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00057420g0007.1 protein AED:0.33 eAED:0.33 QI:287|0.88|0.8|1|0.77|0.7|10|377|227; (*GB) gi|302143598|emb|CBI22351.3| (e_value=6e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CQ79|TXND9_MOUSE (e_value=4e-39) Thioredoxin domain-containing protein 9 OS=Mus musculus GN=Txndc9 PE=1 SV=1;; (*TAIR) AT5G66410.1 (e_value=9e-107) | Symbols: PLP3b | phosducin-like protein 3 homolog | chr5:26519909-26521459 FORWARD LENGTH=230;; (*ITAG) Solyc02g062540.2.1 (e_value=2e-123) genomic_reference:SL2.40ch02 gene_region:28824062-28828907 transcript_region:SL2.40ch02:28824062..28828907- go_terms:GO:0048487 functional_description:"Thioredoxin domain containing 9 (AHRD V1 *--- Q5M8C7_RAT); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00057420g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|359492158|ref|XP_003634372.1| (e_value=8e-24) PREDICTED: ocs element-binding factor 1-like [Vitis vinifera];; (*TAIR) AT4G34590.1 (e_value=1e-20) | Symbols: ATB2, GBF6, AtbZIP11, BZIP11 | G-box binding factor 6 | chr4:16522449-16522928 FORWARD LENGTH=159;; (*ITAG) Solyc02g084860.1.1 (e_value=3e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42509369-42509803 transcript_region:SL2.40ch02:42509369..42509803- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* C0KYN1_SOLLC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00004633g0008.1 protein AED:0.25 eAED:0.29 QI:0|0|0|0.85|0|0.14|7|0|231; (*GB) gi|358346292|ref|XP_003637203.1| (e_value=9e-58) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=5e-43) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=3e-44) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc01g095450.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:78449856-78452248 transcript_region:SL2.40ch01:78449856..78452248- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00004633g0009.1 protein AED:0.00 eAED:0.00 QI:141|1|1|1|0|1|2|494|145; (*GB) gi|81076307|gb|ABB55392.1| (e_value=3e-68) putative translation initiation factor eIF-1A-like [Solanum tuberosum];; (*SWP) sp|P56331|IF1A_ONOVI (e_value=2e-67) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=3e-69) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc01g095410.2.1 (e_value=3e-71) genomic_reference:SL2.40ch01 gene_region:78435197-78437089 transcript_region:SL2.40ch01:78435197..78437089+ go_terms:GO:0003743,GO:0033592 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743,GO:0033592 NbS00005435g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|293; (*GB) gi|23343585|emb|CAC88764.1| (e_value=2e-161) serine acetyltransferase 7 [Nicotiana tabacum];; (*SWP) sp|Q42538|SAT5_ARATH (e_value=5e-137) Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1;; (*TAIR) AT5G56760.1 (e_value=4e-138) | Symbols: ATSERAT1;1, SAT5, SAT-52, SERAT1;1 | serine acetyltransferase 1;1 | chr5:22961498-22962582 REVERSE LENGTH=312;; (*ITAG) Solyc12g008780.1.1 (e_value=5e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2127063-2129694 transcript_region:SL2.40ch12:2127063..2129694- go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00005435g0006.1 protein AED:0.04 eAED:0.04 QI:110|0.83|0.85|1|1|1|7|471|323; (*GB) gi|359484504|ref|XP_002279837.2| (e_value=2e-174) PREDICTED: graves disease carrier protein-like [Vitis vinifera];; (*SWP) sp|P16260|GDC_HUMAN (e_value=4e-54) Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3;; (*TAIR) AT4G26180.1 (e_value=6e-150) | Symbols: | Mitochondrial substrate carrier family protein | chr4:13260263-13261887 REVERSE LENGTH=325;; (*ITAG) Solyc12g008770.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2123672-2126297 transcript_region:SL2.40ch12:2123672..2126297+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00005435g0012.1 protein AED:0.02 eAED:0.08 QI:0|1|0|1|0|0|2|0|164; (*GB) gi|225444961|ref|XP_002282498.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100247499 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-28) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G56840.1 (e_value=6e-50) | Symbols: | myb-like transcription factor family protein | chr5:22980789-22982152 FORWARD LENGTH=233;; (*ITAG) Solyc12g008800.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2142818-2144657 transcript_region:SL2.40ch12:2142818..2144657+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 ***- Q9LVS0_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00005435g0009.1 protein AED:0.22 eAED:0.25 QI:0|0.57|0.75|1|0.71|0.62|8|531|262; (*GB) gi|297803086|ref|XP_002869427.1| (e_value=6e-95) acyl--UDP-N-acetylglucosamine O-acyltransferase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|B5YHC0|LPXA_THEYD (e_value=1e-25) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=lpxA PE=3 SV=1;; (*TAIR) AT4G29540.1 (e_value=3e-84) | Symbols: | bacterial transferase hexapeptide repeat-containing protein | chr4:14497775-14499765 FORWARD LENGTH=334;; (*ITAG) Solyc12g008790.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2134019-2139363 transcript_region:SL2.40ch12:2134019..2139363+ go_terms:GO:0008610,GO:0016740 functional_description:"Acyl- (AHRD V1 ***- B9RKA3_RICCO); contains Interpro domain(s) IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase "; GO:0008610,GO:0016740 NbS00022721g0001.1 protein AED:0.27 eAED:0.31 QI:0|0.33|0.5|1|0.66|0.5|4|709|187; (*GB) gi|147859636|emb|CAN83117.1| (e_value=6e-15) hypothetical protein VITISV_017709 [Vitis vinifera];; (*ITAG) Solyc04g072360.1.1 (e_value=4e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56971123-56973353 transcript_region:SL2.40ch04:56971123..56973353+ go_terms:GO:0031177 functional_description:"F-box/LRR-repeat protein 13 (AHRD V1 ***- FBL13_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0031177 NbS00003791g0004.1 protein AED:0.07 eAED:0.08 QI:0|0.66|0.25|1|0.66|0.75|4|0|247; (*GB) gi|359473953|ref|XP_002263816.2| (e_value=2e-139) PREDICTED: beta-amylase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O23553|BAM3_ARATH (e_value=7e-80) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=5e-81) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g082810.2.1 (e_value=2e-142) genomic_reference:SL2.40ch08 gene_region:62645836-62651991 transcript_region:SL2.40ch08:62645836..62651991- go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** B9RWS7_RICCO); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00003791g0101.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|350 NbS00003791g0113.1 protein AED:0.17 eAED:0.17 QI:491|0.89|0.9|0.96|0.72|0.76|30|1105|1081 NbS00003791g0104.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|143 NbS00003791g0112.1 protein AED:0.86 eAED:0.88 QI:0|0|0|0.5|1|1|4|0|347 NbS00048369g0002.1 protein AED:0.49 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|86 NbS00048369g0004.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|3|0|227; (*GB) gi|57013904|ref|YP_173377.1| (e_value=3e-76) hypothetical protein NitaMp031 [Nicotiana tabacum];; (*ITAG) Solyc06g043010.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:25503317-25504021 transcript_region:SL2.40ch06:25503317..25504021+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048369g0005.1 protein AED:0.42 eAED:0.68 QI:0|0|0|1|0|0|3|0|64 NbS00002234g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|114; (*ITAG) Solyc05g041400.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:50614662-50615917 transcript_region:SL2.40ch05:50614662..50615917- functional_description:"Unknown Protein (AHRD V1)"; NbS00010888g0011.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|121; (*ITAG) Solyc08g067650.1.1 (e_value=4e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:53861969-53862439 transcript_region:SL2.40ch08:53861969..53862439- functional_description:"Unknown Protein (AHRD V1)"; NbS00010888g0007.1 protein AED:0.34 eAED:0.35 QI:0|0.55|0.5|1|0.44|0.4|10|0|258; (*GB) gi|297739423|emb|CBI29605.3| (e_value=2e-101) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94KB2|MLO13_ARATH (e_value=8e-100) MLO-like protein 13 OS=Arabidopsis thaliana GN=MLO13 PE=2 SV=1;; (*TAIR) AT4G24250.1 (e_value=6e-101) | Symbols: MLO13, ATMLO13 | Seven transmembrane MLO family protein | chr4:12575008-12577517 REVERSE LENGTH=478;; (*ITAG) Solyc01g102520.2.1 (e_value=1e-147) genomic_reference:SL2.40ch01 gene_region:83071860-83075439 transcript_region:SL2.40ch01:83071860..83075439+ go_terms:GO:0016021 functional_description:"MLO-like protein 1 (AHRD V1 ***- Q94CG7_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010888g0012.1 protein AED:0.06 eAED:0.06 QI:81|1|0.6|1|0.75|0.6|5|0|323; (*GB) gi|225469876|ref|XP_002270145.1| (e_value=2e-136) PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Vitis vinifera];; (*TAIR) AT2G02370.2 (e_value=2e-124) | Symbols: | SNARE associated Golgi protein family | chr2:621841-623084 FORWARD LENGTH=320;; (*ITAG) Solyc01g102530.2.1 (e_value=5e-160) genomic_reference:SL2.40ch01 gene_region:83075127-83077462 transcript_region:SL2.40ch01:83075127..83077462- functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B7KHF6_CYAP7); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00005301g0006.1 protein AED:0.12 eAED:0.12 QI:251|0.81|0.91|0.91|1|1|12|356|846; (*GB) gi|359491950|ref|XP_003634345.1| (e_value=0.0) PREDICTED: cirhin-like [Vitis vinifera];; (*SWP) sp|Q969X6|CIR1A_HUMAN (e_value=1e-49) Cirhin OS=Homo sapiens GN=CIRH1A PE=1 SV=1;; (*TAIR) AT4G07410.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:4201465-4205136 REVERSE LENGTH=815;; (*ITAG) Solyc12g088290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62172387-62180578 transcript_region:SL2.40ch12:62172387..62180578+ functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00050835g0006.1 protein AED:0.33 eAED:0.33 QI:1083|0.5|0.33|1|1|1|3|58|108 NbS00001409g0001.1 protein AED:0.20 eAED:0.20 QI:110|0.88|0.9|1|0.33|0.6|10|776|302; (*GB) gi|296085147|emb|CBI28642.3| (e_value=1e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G37360.1 (e_value=4e-95) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14805437-14808113 REVERSE LENGTH=309;; (*ITAG) Solyc04g050470.2.1 (e_value=2e-151) genomic_reference:SL2.40ch04 gene_region:46422549-46432661 transcript_region:SL2.40ch04:46422549..46432661- functional_description:"Genomic DNA chromosome 5 P1 clone MNJ8 (AHRD V1 *-*- Q9FHS9_ARATH)"; NbS00005098g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|254; (*GB) gi|351630255|gb|AEQ55282.1| (e_value=2e-129) expansin [Breonia chinensis];; (*SWP) sp|Q9LDJ3|EXP12_ARATH (e_value=2e-106) Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1;; (*TAIR) AT3G15370.1 (e_value=1e-107) | Symbols: ATEXPA12, EXP12, ATEXP12, ATHEXP ALPHA 1.24, EXPA12 | expansin 12 | chr3:5190649-5191982 FORWARD LENGTH=252;; (*ITAG) Solyc07g063210.2.1 (e_value=3e-159) genomic_reference:SL2.40ch07 gene_region:62965105-62967055 transcript_region:SL2.40ch07:62965105..62967055+ go_terms:GO:0005199 functional_description:"Expansin S2 (AHRD V1 ***- Q39626_CUCSA); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00008997g0009.1 protein AED:0.13 eAED:0.13 QI:405|0.72|0.75|0.91|0.90|0.91|12|435|573; (*GB) gi|296089339|emb|CBI39111.3| (e_value=3e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G06440.3 (e_value=3e-88) | Symbols: | BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr5:1964641-1966807 REVERSE LENGTH=479;; (*ITAG) Solyc10g081770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62095810-62099028 transcript_region:SL2.40ch10:62095810..62099028- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00008997g0010.1 protein AED:0.24 eAED:0.24 QI:122|1|1|1|1|1|2|283|198; (*GB) gi|225463284|ref|XP_002264531.1| (e_value=1e-63) PREDICTED: uncharacterized protein LOC100245232 [Vitis vinifera];; (*TAIR) AT2G35900.1 (e_value=1e-51) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 32 Blast hits to 32 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15070203-15071540 REVERSE LENGTH=192;; (*ITAG) Solyc10g081750.1.1 (e_value=3e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62088354-62090732 transcript_region:SL2.40ch10:62088354..62090732- functional_description:"Mal d 1-associated protein (AHRD V1 ***- Q6X182_MALDO)"; NbS00008997g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|611; (*GB) gi|255540135|ref|XP_002511132.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=2e-41) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT4G24970.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc10g081760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00008997g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|240256429|ref|NP_199891.4| (e_value=5e-22) Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Arabidopsis thaliana];; (*TAIR) AT5G50780.1 (e_value=1e-24) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc10g081760.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00005092g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|343172374|gb|AEL98891.1| (e_value=4e-17) integrin-linked protein kinase-like protein, partial [Silene latifolia];; (*TAIR) AT2G31800.1 (e_value=2e-18) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00009201g0007.1 protein AED:0.13 eAED:0.14 QI:6|0.4|0.5|0.83|0.8|0.66|6|0|343; (*GB) gi|255569401|ref|XP_002525668.1| (e_value=4e-77) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G28150.1 (e_value=3e-60) | Symbols: | Protein of unknown function (DUF789) | chr4:13977642-13978912 REVERSE LENGTH=285;; (*ITAG) Solyc10g008480.2.1 (e_value=1e-66) genomic_reference:SL2.40ch10 gene_region:2599168-2602228 transcript_region:SL2.40ch10:2599168..2602228- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00009201g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|2|227|88; (*GB) gi|78191426|gb|ABB29934.1| (e_value=2e-18) acidic ribosomal protein P1a-like [Solanum tuberosum];; (*SWP) sp|Q8LEQ0|RLA13_ARATH (e_value=1e-14) 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2;; (*TAIR) AT5G47700.2 (e_value=8e-16) | Symbols: | 60S acidic ribosomal protein family | chr5:19328019-19328724 REVERSE LENGTH=113;; (*ITAG) Solyc01g104370.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:84525541-84526490 transcript_region:SL2.40ch01:84525541..84526490- go_terms:GO:0005515 functional_description:"60S acidic ribosomal protein P1 (AHRD V1 ***- B6T3C1_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005515 NbS00027289g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.33|3|209|491; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q9LIP3|C71BY_ARATH (e_value=6e-115) Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=CYP71B37 PE=2 SV=2;; (*TAIR) AT3G26330.1 (e_value=5e-116) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc04g011680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00060289g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|553; (*GB) gi|224128446|ref|XP_002320332.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRX4|PME7_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1;; (*TAIR) AT1G02810.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc09g075330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00006532g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|0.33|0.25|4|0|102; (*GB) gi|255570045|ref|XP_002525985.1| (e_value=2e-42) calcium ion binding protein, putative [Ricinus communis];; (*SWP) sp|B3H7A9|PXG7_ARATH (e_value=6e-37) Probable peroxygenase 7 OS=Arabidopsis thaliana GN=PXG7 PE=2 SV=1;; (*TAIR) AT1G23240.2 (e_value=2e-38) | Symbols: | Caleosin-related family protein | chr1:8253164-8254234 REVERSE LENGTH=174;; (*ITAG) Solyc04g007960.2.1 (e_value=4e-61) genomic_reference:SL2.40ch04 gene_region:1614160-1618540 transcript_region:SL2.40ch04:1614160..1618540- go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00018605g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|730583|sp|P41099.1|RLA2_PARAR (e_value=3e-22) RecName: Full=60S acidic ribosomal protein P2;; (*SWP) sp|P41099|RLA2_PARAR (e_value=1e-23) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=3e-20) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc11g067100.1.1 (e_value=3e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:49928225-49929780 transcript_region:SL2.40ch11:49928225..49929780- go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00033537g0001.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|865; (*GB) gi|255585507|ref|XP_002533445.1| (e_value=0.0) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=0.0) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=0.0) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00033537g0007.1 protein AED:0.00 eAED:0.00 QI:319|1|0.75|1|0.66|0.75|4|0|98; (*GB) gi|296090219|emb|CBI40038.3| (e_value=5e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54KX3|VP13F_DICDI (e_value=4e-13) Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum GN=vps13F PE=3 SV=1;; (*TAIR) AT5G24740.1 (e_value=7e-32) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045140.1.1 (e_value=4e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:36810584-36817804 transcript_region:SL2.40ch11:36810584..36817804+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 *-*- D3BE65_POLPA)"; NbS00060733g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0.33|0.83|1|1|6|0|237; (*GB) gi|307109119|gb|EFN57357.1| (e_value=2e-55) hypothetical protein CHLNCDRAFT_30273 [Chlorella variabilis];; (*SWP) sp|Q9FHB3|FBRL3_ARATH (e_value=3e-54) Putative rRNA 2'-O-methyltransferase fibrillarin 3 OS=Arabidopsis thaliana GN=FIB3 PE=2 SV=1;; (*TAIR) AT5G52490.1 (e_value=2e-55) | Symbols: | Fibrillarin family protein | chr5:21298857-21300239 FORWARD LENGTH=292;; (*ITAG) Solyc03g025270.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:7084840-7087888 transcript_region:SL2.40ch03:7084840..7087888- go_terms:GO:0030515 functional_description:"rRNA 2&apos-O-methyltransferase fibrillarin (AHRD V1 ***- B6JX17_SCHJY); contains Interpro domain(s) IPR000692 Fibrillarin "; GO:0030515 NbS00060733g0002.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|4|0|595; (*GB) gi|147866080|emb|CAN80959.1| (e_value=3e-42) hypothetical protein VITISV_037562 [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=1e-17) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=9e-19) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc05g049960.2.1 (e_value=3e-111) genomic_reference:SL2.40ch05 gene_region:58951213-58958621 transcript_region:SL2.40ch05:58951213..58958621- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00060733g0009.1 protein AED:0.57 eAED:0.70 QI:0|0|0|0.5|0|0.5|2|0|86 NbS00059950g0006.1 protein AED:0.11 eAED:0.16 QI:532|0.75|0.4|1|0.5|0.4|5|0|548; (*GB) gi|225459284|ref|XP_002285786.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252301 [Vitis vinifera];; (*SWP) sp|Q54Q39|PP1R7_DICDI (e_value=3e-11) Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1;; (*TAIR) AT1G78230.1 (e_value=5e-141) | Symbols: | Outer arm dynein light chain 1 protein | chr1:29430226-29432516 FORWARD LENGTH=681;; (*ITAG) Solyc04g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57863338-57865996 transcript_region:SL2.40ch04:57863338..57865996+ go_terms:GO:0005515 functional_description:"Phosphatase 1 regulatory subunit 7 (AHRD V1 *--- C1C4C3_RANCA); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00059950g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|225459282|ref|XP_002285785.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257435 isoform 1 [Vitis vinifera];; (*TAIR) AT4G08940.1 (e_value=2e-169) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:5730986-5732173 REVERSE LENGTH=395;; (*ITAG) Solyc04g074280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57868106-57869335 transcript_region:SL2.40ch04:57868106..57869335- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00003577g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|62318606|dbj|BAD95030.1| (e_value=2e-21) heat-shock protein [Arabidopsis thaliana];; (*SWP) sp|P55737|HS902_ARATH (e_value=1e-21) Heat shock protein 90-2 OS=Arabidopsis thaliana GN=HSP90-2 PE=1 SV=1;; (*TAIR) AT5G52640.1 (e_value=8e-23) | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352542-21355147 FORWARD LENGTH=705;; (*ITAG) Solyc07g065840.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:64658676-64662396 transcript_region:SL2.40ch07:64658676..64662396- go_terms:GO:0042623 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623 NbS00042775g0005.1 protein AED:0.00 eAED:0.00 QI:257|1|0.75|1|0|0|4|0|81 NbS00042775g0004.1 protein AED:0.10 eAED:0.10 QI:937|0.83|1|1|0.5|0.42|7|232|127; (*ITAG) Solyc02g071180.2.1 (e_value=3e-21) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00051862g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|268|116; (*GB) gi|255547570|ref|XP_002514842.1| (e_value=4e-15) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G06010.1 (e_value=3e-16) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1823347-1823670 FORWARD LENGTH=78;; (*ITAG) Solyc04g056430.2.1 (e_value=7e-40) genomic_reference:SL2.40ch04 gene_region:53351767-53352332 transcript_region:SL2.40ch04:53351767..53352332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053226g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.81|0.82|1|0.75|0.82|17|0|664; (*GB) gi|3688602|dbj|BAA33462.1| (e_value=0.0) Oxidosqualene Cyclase [Panax ginseng];; (*SWP) sp|Q9SXV6|CAS1_GLYGL (e_value=0.0) Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=0.0) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc05g047580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58187278-58197833 transcript_region:SL2.40ch05:58187278..58197833- go_terms:GO:0000250 functional_description:"Lanosterol synthase (AHRD V1 **** Q1ERD3_LOTJA); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0000250 NbS00042441g0005.1 protein AED:0.28 eAED:0.28 QI:57|0.66|0.7|1|0.33|0.6|10|0|538; (*GB) gi|356550768|ref|XP_003543756.1| (e_value=0.0) PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max];; (*SWP) sp|Q5XF57|Y5576_ARATH (e_value=2e-157) Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1;; (*TAIR) AT5G57670.2 (e_value=1e-158) | Symbols: | Protein kinase superfamily protein | chr5:23360531-23363694 REVERSE LENGTH=579;; (*ITAG) Solyc07g006620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1479714-1488055 transcript_region:SL2.40ch07:1479714..1488055+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036022g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|242054875|ref|XP_002456583.1| (e_value=6e-72) hypothetical protein SORBIDRAFT_03g038830 [Sorghum bicolor];; (*SWP) sp|Q8RX71|BAG4_ARATH (e_value=2e-48) BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana GN=BAG4 PE=1 SV=1;; (*TAIR) AT3G51780.1 (e_value=2e-49) | Symbols: ATBAG4, BAG4 | BCL-2-associated athanogene 4 | chr3:19207029-19208178 REVERSE LENGTH=269;; (*ITAG) Solyc10g085290.1.1 (e_value=7e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63843260-63847951 transcript_region:SL2.40ch10:63843260..63847951+ go_terms:GO:0006915 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00038563g0002.1 protein AED:0.23 eAED:0.30 QI:0|0|0|1|1|1|2|0|114; (*GB) gi|115808|sp|P04783.1|CB25_PETSP (e_value=9e-49) RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic; AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags: Precursor;; (*SWP) sp|P04783|CB25_PETSP (e_value=3e-50) Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=8e-46) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=9e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbC24056338g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|0|0.5|2|0|54; (*GB) gi|224090059|ref|XP_002308925.1| (e_value=6e-14) chromatin remodeling complex subunit [Populus trichocarpa];; (*ITAG) Solyc04g016370.2.1 (e_value=1e-18) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00025990g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0.5|2|2394|215; (*GB) gi|147860904|emb|CAN80873.1| (e_value=3e-56) hypothetical protein VITISV_004539 [Vitis vinifera];; (*TAIR) AT3G26510.4 (e_value=3e-43) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc05g013530.2.1 (e_value=1e-74) genomic_reference:SL2.40ch05 gene_region:6766537-6768182 transcript_region:SL2.40ch05:6766537..6768182+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00045066g0005.1 protein AED:0.15 eAED:0.15 QI:297|0.88|0.8|1|0.66|0.7|10|14|502; (*GB) gi|147818235|emb|CAN73549.1| (e_value=3e-125) hypothetical protein VITISV_038183 [Vitis vinifera];; (*SWP) sp|Q9LEZ3|BIM1_ARATH (e_value=4e-80) Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2;; (*TAIR) AT5G08130.4 (e_value=3e-81) | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2609571 REVERSE LENGTH=529;; (*ITAG) Solyc03g114720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58678064-58684162 transcript_region:SL2.40ch03:58678064..58684162+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor BIM2 (AHRD V1 *-** B6SVP6_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00013254g0021.1 protein AED:0.11 eAED:0.11 QI:261|0.6|0.66|1|0.4|0.33|6|283|288; (*GB) gi|224105519|ref|XP_002313841.1| (e_value=6e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15730.1 (e_value=8e-110) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc12g088910.1.1 (e_value=4e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62541117-62543852 transcript_region:SL2.40ch12:62541117..62543852+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013254g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|255538414|ref|XP_002510272.1| (e_value=4e-110) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G42680.2 (e_value=2e-94) | Symbols: | Protein of unknown function, DUF617 | chr5:17114640-17115356 FORWARD LENGTH=238;; (*ITAG) Solyc12g088930.1.1 (e_value=9e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62564010-62564834 transcript_region:SL2.40ch12:62564010..62564834+ functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U390_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00013254g0024.1 protein AED:0.18 eAED:0.18 QI:0|0.2|0.33|0.83|0.4|0.5|6|0|735; (*GB) gi|359492629|ref|XP_003634444.1| (e_value=1e-177) PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q9LJ64|PLRX1_ARATH (e_value=3e-167) Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1;; (*TAIR) AT3G19020.1 (e_value=2e-168) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6559174-6562044 REVERSE LENGTH=956;; (*ITAG) Solyc12g088950.1.1 (e_value=5e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62573865-62576020 transcript_region:SL2.40ch12:62573865..62576020- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00013254g0023.1 protein AED:0.19 eAED:0.19 QI:377|0.81|0.66|1|0.54|0.75|12|0|735; (*GB) gi|225458499|ref|XP_002282240.1| (e_value=3e-161) PREDICTED: uncharacterized protein LOC100257467 [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=5e-59) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=4e-145) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc12g088940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62566327-62571104 transcript_region:SL2.40ch12:62566327..62571104- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013254g0022.1 protein AED:0.20 eAED:0.20 QI:273|0.87|0.82|1|0.81|0.76|17|366|978; (*GB) gi|359492622|ref|XP_002282350.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267859 [Vitis vinifera];; (*TAIR) AT4G11800.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:7093666-7098519 REVERSE LENGTH=1013;; (*ITAG) Solyc12g088920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62544952-62554247 transcript_region:SL2.40ch12:62544952..62554247- go_terms:GO:0016787 functional_description:"Calcineurin-like phosphoesterase family protein (AHRD V1 *-*- A9G786_SORC5); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00038815g0006.1 protein AED:0.11 eAED:0.14 QI:0|0|0|1|0|0.33|3|0|593; (*GB) gi|111481711|gb|ABC25060.2| (e_value=0.0) ZTL [Ipomoea nil];; (*SWP) sp|Q94BT6|ADO1_ARATH (e_value=0.0) Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2;; (*TAIR) AT5G57360.1 (e_value=0.0) | Symbols: ZTL, LKP1, ADO1, FKL2 | Galactose oxidase/kelch repeat superfamily protein | chr5:23241597-23244256 FORWARD LENGTH=609;; (*ITAG) Solyc07g017750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7937097-7939889 transcript_region:SL2.40ch07:7937097..7939889+ go_terms:GO:0005515 functional_description:"Flavin-binding kelch domain F box protein (AHRD V1 **-* D7KVS5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00005601g0009.1 protein AED:0.16 eAED:0.18 QI:63|0.84|0.78|1|0.84|0.85|14|572|571; (*GB) gi|183238710|gb|ACC60981.1| (e_value=0.0) beta-galactosidase 1 precursor [Petunia x hybrida];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc06g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35886685-35893053 transcript_region:SL2.40ch06:35886685..35893053+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B2LYJ3_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00005601g0008.1 protein AED:0.05 eAED:0.05 QI:112|0.83|0.85|1|1|1|7|427|696; (*GB) gi|356522474|ref|XP_003529871.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc06g062590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35894121-35897787 transcript_region:SL2.40ch06:35894121..35897787- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00014510g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0|0.33|3|203|748; (*GB) gi|296084001|emb|CBI24389.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8L6|PPR80_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2;; (*TAIR) AT1G53600.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20001263-20003416 FORWARD LENGTH=717;; (*ITAG) Solyc12g011400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4219640-4222331 transcript_region:SL2.40ch12:4219640..4222331- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014510g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|147840314|emb|CAN70691.1| (e_value=1e-14) hypothetical protein VITISV_007578 [Vitis vinifera];; (*ITAG) Solyc07g061890.1.1 (e_value=4e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62000405-62000956 transcript_region:SL2.40ch07:62000405..62000956+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034060g0004.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|325; (*GB) gi|359485839|ref|XP_002274325.2| (e_value=1e-87) PREDICTED: uncharacterized protein LOC100242621 [Vitis vinifera];; (*TAIR) AT4G28210.1 (e_value=2e-74) | Symbols: emb1923 | embryo defective 1923 | chr4:13990634-13991931 FORWARD LENGTH=348;; (*ITAG) Solyc10g008600.2.1 (e_value=1e-150) genomic_reference:SL2.40ch10 gene_region:2689974-2693145 transcript_region:SL2.40ch10:2689974..2693145+ functional_description:"Unknown Protein (AHRD V1)"; NbC23758669g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|242038317|ref|XP_002466553.1| (e_value=1e-38) hypothetical protein SORBIDRAFT_01g009820 [Sorghum bicolor];; (*SWP) sp|P35063|H2AX_PICAB (e_value=1e-39) Histone H2AX OS=Picea abies PE=2 SV=1;; (*TAIR) AT1G08880.1 (e_value=6e-40) | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone superfamily protein | chr1:2847144-2847676 REVERSE LENGTH=142;; (*ITAG) Solyc09g074300.1.1 (e_value=1e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:61585603-61586031 transcript_region:SL2.40ch09:61585603..61586031+ go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- B9REZ0_RICCO); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00031274g0007.1 protein AED:0.32 eAED:0.32 QI:129|0.71|0.62|1|0.57|0.75|8|412|333; (*GB) gi|225454220|ref|XP_002274529.1| (e_value=7e-112) PREDICTED: neuroguidin-B-like [Vitis vinifera];; (*SWP) sp|Q2KII6|NGDN_BOVIN (e_value=5e-28) Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1;; (*TAIR) AT1G07840.1 (e_value=7e-80) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426425 FORWARD LENGTH=312;; (*ITAG) Solyc04g076560.2.1 (e_value=8e-133) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00015614g0003.1 protein AED:0.07 eAED:0.07 QI:944|1|1|1|0.66|0.5|4|54|401; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00015614g0010.1 protein AED:0.13 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|803; (*GB) gi|225448572|ref|XP_002277929.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase IMK3-like isoform 1 [Vitis vinifera];; (*SWP) sp|C0LGP9|IMK3_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1;; (*TAIR) AT3G51740.1 (e_value=0.0) | Symbols: IMK2 | inflorescence meristem receptor-like kinase 2 | chr3:19189248-19191842 FORWARD LENGTH=836;; (*ITAG) Solyc05g052350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61751263-61754124 transcript_region:SL2.40ch05:61751263..61754124+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015614g0006.1 protein AED:0.49 eAED:0.50 QI:0|0|0|0.75|1|1|4|0|93 NbS00011415g0004.1 protein AED:0.60 eAED:0.84 QI:0|0|0|0.6|1|1|5|0|198 NbS00017707g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.4|1|0.75|0.6|5|0|354; (*GB) gi|224137786|ref|XP_002322651.1| (e_value=4e-179) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SR79|PPA16_ARATH (e_value=1e-162) Probable inactive purple acid phosphatase 16 OS=Arabidopsis thaliana GN=PAP16 PE=2 SV=1;; (*TAIR) AT3G10150.1 (e_value=1e-163) | Symbols: ATPAP16, PAP16 | purple acid phosphatase 16 | chr3:3137502-3139056 REVERSE LENGTH=367;; (*ITAG) Solyc04g016490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7311131-7315527 transcript_region:SL2.40ch04:7311131..7315527- go_terms:GO:0004722,GO:0003993 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- C6IM14_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 "; GO:0004722,GO:0003993 NbS00054048g0009.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|0.63|0.83|12|0|478; (*GB) gi|225449112|ref|XP_002276892.1| (e_value=3e-149) PREDICTED: alpha-taxilin [Vitis vinifera];; (*SWP) sp|Q6PAM1|TXLNA_MOUSE (e_value=3e-22) Alpha-taxilin OS=Mus musculus GN=Txlna PE=2 SV=1;; (*TAIR) AT5G50840.1 (e_value=2e-125) | Symbols: | CONTAINS InterPro DOMAIN/s: Taxilin (InterPro:IPR019132); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20685903-20688739 FORWARD LENGTH=404;; (*ITAG) Solyc04g047750.2.1 (e_value=2e-59) genomic_reference:SL2.40ch04 gene_region:36138730-36144091 transcript_region:SL2.40ch04:36138730..36144091+ functional_description:"Alpha-taxilin (AHRD V1 ***- B6TZ42_MAIZE); contains Interpro domain(s) IPR019132 Taxilin "; NbS00041886g0005.1 protein AED:0.10 eAED:0.10 QI:525|1|1|1|0.33|0.5|10|419|323; (*GB) gi|225455352|ref|XP_002277097.1| (e_value=2e-137) PREDICTED: protein ABIL2-like [Vitis vinifera];; (*SWP) sp|Q6NMC6|ABIL3_ARATH (e_value=1e-128) Protein ABIL3 OS=Arabidopsis thaliana GN=ABIL3 PE=2 SV=1;; (*TAIR) AT5G24310.1 (e_value=1e-129) | Symbols: ABIL3 | ABL interactor-like protein 3 | chr5:8274637-8276325 FORWARD LENGTH=321;; (*ITAG) Solyc03g083030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46407770-46412248 transcript_region:SL2.40ch03:46407770..46412248- functional_description:"Protein ABIL1 (AHRD V1 **-- B6TQN2_MAIZE)"; NbS00041886g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|0|0|3|1494|100 NbC25309595g0002.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|2|0|224; (*ITAG) Solyc03g083740.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47224097-47225350 transcript_region:SL2.40ch03:47224097..47225350+ functional_description:"Os10g0104700 protein (Fragment) (AHRD V1 *-*- Q0IZD0_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00038958g0004.1 protein AED:0.26 eAED:0.26 QI:235|1|1|1|0.5|0.6|5|497|195; (*GB) gi|18414255|ref|NP_568121.1| (e_value=2e-88) RAB GTPase-C2A [Arabidopsis thaliana];; (*SWP) sp|O49841|RAC2A_ARATH (e_value=7e-90) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=6e-91) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc11g008020.1.1 (e_value=8e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2238213-2241626 transcript_region:SL2.40ch11:2238213..2241626+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00018621g0002.1 protein AED:0.17 eAED:0.17 QI:427|1|1|1|0.25|0.4|5|383|128; (*GB) gi|297738577|emb|CBI27822.3| (e_value=5e-66) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28230.1 (e_value=1e-60) | Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219;; (*ITAG) Solyc12g009090.1.1 (e_value=6e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2414294-2418251 transcript_region:SL2.40ch12:2414294..2418251+ go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013921 Mediator complex, subunit Med20 "; GO:0016592 NbS00007945g0003.1 protein AED:0.00 eAED:0.00 QI:301|1|1|1|1|1|7|199|325; (*GB) gi|224136135|ref|XP_002327389.1| (e_value=2e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55909|Y305_SYNY3 (e_value=9e-23) TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1;; (*TAIR) AT1G22850.1 (e_value=2e-95) | Symbols: | SNARE associated Golgi protein family | chr1:8080671-8082816 REVERSE LENGTH=344;; (*ITAG) Solyc06g064570.2.1 (e_value=6e-135) genomic_reference:SL2.40ch06 gene_region:36624383-36628900 transcript_region:SL2.40ch06:36624383..36628900+ functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B9XJU7_9BACT); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00013500g0008.1 protein AED:0.38 eAED:0.40 QI:157|0.87|0.88|1|0.75|0.66|9|0|200; (*GB) gi|296084675|emb|CBI25812.3| (e_value=2e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G38695.1 (e_value=3e-57) | Symbols: | unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:16177946-16180236 FORWARD LENGTH=212;; (*ITAG) Solyc06g061130.2.1 (e_value=9e-107) genomic_reference:SL2.40ch06 gene_region:35526431-35530685 transcript_region:SL2.40ch06:35526431..35530685+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013500g0009.1 protein AED:0.23 eAED:0.23 QI:314|1|1|1|0.5|0.66|3|434|150; (*GB) gi|224126295|ref|XP_002329519.1| (e_value=4e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17960.1 (e_value=5e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9971154-9972227 FORWARD LENGTH=154;; (*ITAG) Solyc06g061140.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:35532227-35536524 transcript_region:SL2.40ch06:35532227..35536524- functional_description:"Genomic DNA chromosome 5 BAC clone F10E10 (AHRD V1 ***- Q9FG56_ARATH)"; NbS00023365g0001.1 protein AED:0.14 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|255564076|ref|XP_002523036.1| (e_value=2e-167) ATP synthase subunit d, putative [Ricinus communis];; (*SWP) sp|Q9XGM1|VATD_ARATH (e_value=6e-156) V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2;; (*TAIR) AT3G58730.1 (e_value=4e-157) | Symbols: | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) | chr3:21718495-21719280 REVERSE LENGTH=261;; (*ITAG) Solyc01g073690.2.1 (e_value=4e-170) genomic_reference:SL2.40ch01 gene_region:70303278-70304360 transcript_region:SL2.40ch01:70303278..70304360- go_terms:GO:0033178 functional_description:"V-type ATP synthase subunit D (AHRD V1 ***- B0WRC9_CULQU); contains Interpro domain(s) IPR002699 ATPase, V1/A1 complex, subunit D "; GO:0033178 NbS00030352g0003.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|1|1|3|0|503; (*GB) gi|225456731|ref|XP_002275117.1| (e_value=6e-55) PREDICTED: putative pectinesterase/pectinesterase inhibitor 26-like [Vitis vinifera];; (*SWP) sp|Q9LUL8|PME26_ARATH (e_value=3e-26) Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1;; (*TAIR) AT3G14300.1 (e_value=2e-27) | Symbols: ATPMEPCRC, ATPME26, PME26 | pectinesterase family protein | chr3:4766905-4769898 REVERSE LENGTH=968;; (*ITAG) Solyc03g112970.1.1 (e_value=2e-100) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:57344127-57344960 transcript_region:SL2.40ch03:57344127..57344960+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00058225g0005.1 protein AED:0.06 eAED:0.06 QI:190|1|0.33|1|0|0.33|3|0|360; (*GB) gi|63253080|dbj|BAD98314.1| (e_value=0.0) peroxidase [Nicotiana tabacum];; (*SWP) sp|P12437|PERX_SOLTU (e_value=2e-160) Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT5G05340.1 (e_value=3e-70) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc02g079500.2.1 (e_value=3e-157) genomic_reference:SL2.40ch02 gene_region:38618009-38620468 transcript_region:SL2.40ch02:38618009..38620468- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q50LG4_TOBAC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00023933g0004.1 protein AED:0.23 eAED:0.23 QI:732|1|1|1|0.66|0.5|4|1533|86 NbS00031195g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.84|0.71|0.85|0.61|0.71|14|0|487; (*GB) gi|255554711|ref|XP_002518393.1| (e_value=3e-108) vacuolar protein sorting-associated protein, putative [Ricinus communis];; (*SWP) sp|Q54LB8|VP13A_DICDI (e_value=8e-16) Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1;; (*TAIR) AT5G24740.1 (e_value=8e-92) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36829423-36874249 transcript_region:SL2.40ch11:36829423..36874249+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 *-*- C0NJR3_AJECG)"; NbS00010784g0003.1 protein AED:0.11 eAED:0.11 QI:101|0.66|0.75|1|1|1|4|205|166; (*GB) gi|255540813|ref|XP_002511471.1| (e_value=7e-56) two-component sensor protein histidine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q7G8V2|ARR15_ARATH (e_value=3e-48) Two-component response regulator ARR15 OS=Arabidopsis thaliana GN=ARR15 PE=1 SV=1;; (*TAIR) AT1G74890.1 (e_value=3e-49) | Symbols: ARR15 | response regulator 15 | chr1:28131590-28132710 REVERSE LENGTH=206;; (*ITAG) Solyc03g113720.2.1 (e_value=5e-81) genomic_reference:SL2.40ch03 gene_region:57836552-57838432 transcript_region:SL2.40ch03:57836552..57838432- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbC23989517g0002.1 protein AED:0.13 eAED:0.60 QI:0|0|0|1|0|0|2|0|75 NbS00021710g0002.1 protein AED:0.11 eAED:0.12 QI:448|0.9|0.81|1|1|1|11|0|1400; (*GB) gi|359486840|ref|XP_002284223.2| (e_value=0.0) PREDICTED: ABC transporter B family member 20-like [Vitis vinifera];; (*SWP) sp|Q9M3B9|AB20B_ARATH (e_value=0.0) ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1;; (*TAIR) AT3G55320.1 (e_value=0.0) | Symbols: PGP20 | P-glycoprotein 20 | chr3:20507391-20513393 REVERSE LENGTH=1408;; (*ITAG) Solyc04g010310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3631081-3639205 transcript_region:SL2.40ch04:3631081..3639205+ go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *-** YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00021710g0010.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|3|0|354; (*GB) gi|255566104|ref|XP_002524040.1| (e_value=6e-121) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q42602|C89A2_ARATH (e_value=2e-97) Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2;; (*TAIR) AT1G64950.1 (e_value=3e-107) | Symbols: CYP89A5 | cytochrome P450, family 89, subfamily A, polypeptide 5 | chr1:24127587-24129119 FORWARD LENGTH=510;; (*ITAG) Solyc04g010320.1.1 (e_value=6e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3655025-3656521 transcript_region:SL2.40ch04:3655025..3656521- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00021710g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0|0|2|0|107; (*GB) gi|356576123|ref|XP_003556183.1| (e_value=7e-20) PREDICTED: cytochrome P450 89A2-like [Glycine max];; (*SWP) sp|Q42602|C89A2_ARATH (e_value=2e-14) Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2;; (*TAIR) AT1G64940.1 (e_value=1e-16) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc04g010320.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3655025-3656521 transcript_region:SL2.40ch04:3655025..3656521- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026760g0011.1 protein AED:0.13 eAED:0.16 QI:119|0.89|0.89|1|0.89|0.93|29|0|987; (*GB) gi|359489209|ref|XP_002270774.2| (e_value=0.0) PREDICTED: glycyl-tRNA synthetase 2, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8L785|SYGM2_ARATH (e_value=2e-171) Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=1 SV=1;; (*TAIR) AT3G48110.1 (e_value=1e-172) | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:17763111-17770964 FORWARD LENGTH=1067;; (*ITAG) Solyc01g090200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75585143-75617181 transcript_region:SL2.40ch01:75585143..75617181+ go_terms:GO:0005737 functional_description:"Glycyl-tRNA synthetase beta subunit (AHRD V1 ***- D2PQC6_KRIFD); contains Interpro domain(s) IPR002311 Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal "; GO:0005737 NbS00026760g0012.1 protein AED:0.32 eAED:0.35 QI:0|1|0|1|0|0|2|0|102; (*ITAG) Solyc12g015630.1.1 (e_value=4e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:5639981-5641409 transcript_region:SL2.40ch12:5639981..5641409- functional_description:"Genomic DNA chromosome 5 P1 clone MDF20 (AHRD V1 ***- Q9FM81_ARATH)"; NbS00026760g0013.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|107 NbS00022937g0010.1 protein AED:0.73 eAED:0.87 QI:84|0|0|0.33|1|1|6|0|232; (*GB) gi|225447639|ref|XP_002271384.1| (e_value=2e-133) PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Vitis vinifera];; (*SWP) sp|Q8R307|VPS18_MOUSE (e_value=7e-16) Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2;; (*TAIR) AT1G12470.1 (e_value=3e-127) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=2e-156) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00022937g0009.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.12|0.85|1|8|0|242; (*GB) gi|224124652|ref|XP_002319385.1| (e_value=1e-111) predicted protein [Populus trichocarpa];; (*TAIR) AT1G12470.1 (e_value=8e-105) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=8e-122) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00052494g0001.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|1|1|8|0|232; (*GB) gi|255545672|ref|XP_002513896.1| (e_value=3e-130) Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis];; (*SWP) sp|Q9CQE7|ERGI3_MOUSE (e_value=4e-88) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=2 SV=1;; (*TAIR) AT1G36050.2 (e_value=7e-129) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386;; (*ITAG) Solyc01g105100.2.1 (e_value=2e-156) genomic_reference:SL2.40ch01 gene_region:85126229-85135705 transcript_region:SL2.40ch01:85126229..85135705- go_terms:GO:0042802 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0042802 NbS00052494g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|653; (*GB) gi|255578845|ref|XP_002530277.1| (e_value=5e-166) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|O48788|Y2267_ARATH (e_value=6e-76) Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1;; (*TAIR) AT2G26730.1 (e_value=5e-77) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658;; (*ITAG) Solyc01g105080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85118629-85120996 transcript_region:SL2.40ch01:85118629..85120996+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00052494g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0.8|1|0.5|0.2|5|1054|381; (*GB) gi|225444203|ref|XP_002270373.1| (e_value=3e-109) PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Vitis vinifera];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=8e-43) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT4G13070.1 (e_value=1e-104) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr4:7621780-7623051 REVERSE LENGTH=343;; (*ITAG) Solyc01g105090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85121587-85124477 transcript_region:SL2.40ch01:85121587..85124477+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_MAIZE); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbC25272402g0001.1 protein AED:0.49 eAED:0.65 QI:0|0.5|0|1|0|0|3|0|86; (*GB) gi|3929922|dbj|BAA34713.1| (e_value=3e-36) plastidal protoporphyrinogen oxidase [Nicotiana tabacum];; (*SWP) sp|O24163|PPOC_TOBAC (e_value=9e-38) Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1;; (*TAIR) AT4G01690.2 (e_value=1e-33) | Symbols: PPOX | Flavin containing amine oxidoreductase family | chr4:729929-732309 FORWARD LENGTH=506;; (*ITAG) Solyc01g079090.2.1 (e_value=7e-35) genomic_reference:SL2.40ch01 gene_region:70668181-70673636 transcript_region:SL2.40ch01:70668181..70673636+ go_terms:GO:0055114 functional_description:"Protoporphyrinogen oxidase (AHRD V1 ***- O64384_SOLTU); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00010136g0106.1 protein AED:0.21 eAED:0.21 QI:0|0.91|0.84|1|0.75|0.76|13|257|754 NbS00018410g0006.1 protein AED:0.01 eAED:0.01 QI:25|1|0.8|1|0.75|0.8|5|0|257; (*GB) gi|225427282|ref|XP_002278917.1| (e_value=6e-127) PREDICTED: expansin-like B1 [Vitis vinifera];; (*SWP) sp|Q850K7|EXLB1_ORYSJ (e_value=2e-102) Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=2e-53) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077330.2.1 (e_value=3e-145) genomic_reference:SL2.40ch08 gene_region:58389533-58391046 transcript_region:SL2.40ch08:58389533..58391046- go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A2ICD7_CUNLA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00018410g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.89|0.9|0.96|0.89|0.9|30|676|1383; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=0.0) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0.0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=0.0) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00054566g0003.1 protein AED:0.00 eAED:0.00 QI:306|1|1|1|1|1|3|327|162; (*GB) gi|350539992|ref|NP_001233835.1| (e_value=2e-69) heat shock protein binding protein [Solanum lycopersicum];; (*SWP) sp|Q9SAG8|DNAJ8_ARATH (e_value=4e-36) Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1;; (*TAIR) AT1G80920.1 (e_value=3e-37) | Symbols: J8 | Chaperone DnaJ-domain superfamily protein | chr1:30403863-30404549 REVERSE LENGTH=163;; (*ITAG) Solyc06g068500.2.1 (e_value=3e-84) genomic_reference:SL2.40ch06 gene_region:38844893-38846879 transcript_region:SL2.40ch06:38844893..38846879- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein DnaJ 1 (AHRD V1 *-*- D8USE3_9MICC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00049217g0001.1 protein AED:0.25 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C501|PPR70_ARATH (e_value=4e-23) Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1;; (*TAIR) AT1G33350.1 (e_value=3e-24) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:12090071-12091687 REVERSE LENGTH=538;; (*ITAG) Solyc06g066380.1.1 (e_value=1e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00037308g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|718; (*GB) gi|225465635|ref|XP_002270253.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Vitis vinifera];; (*SWP) sp|P0C8Q6|PP368_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1;; (*TAIR) AT5G08310.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2672756-2675254 REVERSE LENGTH=832;; (*ITAG) Solyc04g009220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2705636-2708194 transcript_region:SL2.40ch04:2705636..2708194- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031493g0016.1 protein AED:0.16 eAED:0.16 QI:77|0.75|0.8|1|0|0.2|5|68|435; (*GB) gi|224121894|ref|XP_002318699.1| (e_value=4e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5N6V0|Y1054_ORYSJ (e_value=3e-23) B3 domain-containing protein Os01g0905400 OS=Oryza sativa subsp. japonica GN=Os01g0905400 PE=2 SV=1;; (*ITAG) Solyc03g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1727613-1733932 transcript_region:SL2.40ch03:1727613..1733932+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os01g0905400 (AHRD V1 *-*- Y1054_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00031493g0017.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|0|0|2|0|71 NbS00040113g0001.1 protein AED:0.30 eAED:0.31 QI:0|0.6|0.5|1|1|1|6|0|453; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=0.0) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=6e-177) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=0.0) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc12g044270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44606763-44609277 transcript_region:SL2.40ch12:44606763..44609277+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00040113g0008.1 protein AED:0.33 eAED:0.34 QI:147|1|0.66|1|1|1|3|0|145; (*GB) gi|407355|dbj|BAA04634.1| (e_value=5e-71) PSI-H precursor [Nicotiana sylvestris];; (*SWP) sp|O04006|PSAH_BRARA (e_value=3e-55) Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1;; (*TAIR) AT1G52230.1 (e_value=4e-56) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=6e-66) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00006271g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|164 NbS00006271g0007.1 protein AED:0.21 eAED:0.21 QI:251|0.88|0.9|1|0.88|0.9|10|456|285; (*GB) gi|356523245|ref|XP_003530251.1| (e_value=2e-140) PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=2e-127) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.1 (e_value=7e-131) | Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290;; (*ITAG) Solyc06g068670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38958670-38961543 transcript_region:SL2.40ch06:38958670..38961543- functional_description:"Unknown Protein (AHRD V1)"; NbS00016565g0016.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.66|1|1|6|0|645; (*GB) gi|255543088|ref|XP_002512607.1| (e_value=1e-37) hypothetical protein RCOM_1437240 [Ricinus communis];; (*TAIR) AT5G44800.1 (e_value=1e-17) | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr5:18083659-18092162 REVERSE LENGTH=2223;; (*ITAG) Solyc04g050960.2.1 (e_value=8e-156) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00016565g0017.1 protein AED:0.02 eAED:0.02 QI:266|1|1|1|0|1|2|0|115; (*ITAG) Solyc04g051150.2.1 (e_value=1e-32) genomic_reference:SL2.40ch04 gene_region:48879825-48894993 transcript_region:SL2.40ch04:48879825..48894993+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00016565g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|60 NbS00016565g0009.1 protein AED:0.58 eAED:0.77 QI:0|0.33|0|0.75|1|1|4|0|87 NbS00060082g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.6|1|1|1|5|0|424; (*GB) gi|2459815|gb|AAC28905.1| (e_value=0.0) polygalacturonase 4 [Solanum lycopersicum];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=5e-171) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=2e-171) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g096750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63877420-63878834 transcript_region:SL2.40ch12:63877420..63878834+ go_terms:GO:0005975 functional_description:"Polygalacturonase 4 (AHRD V1 ***- O22312_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00022173g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|505; (*GB) gi|356560973|ref|XP_003548760.1| (e_value=1e-168) PREDICTED: glucan endo-1,3-beta-glucosidase 8-like [Glycine max];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=1e-162) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT1G64760.2 (e_value=9e-164) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24054220-24056194 REVERSE LENGTH=481;; (*ITAG) Solyc03g058450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:21917528-21919776 transcript_region:SL2.40ch03:21917528..21919776- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00033277g0001.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|546358|gb|AAB30525.1| (e_value=1e-77) small heat-shock protein homolog [Solanum tuberosum];; (*SWP) sp|P19244|HSP41_PEA (e_value=3e-58) 22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1;; (*TAIR) AT4G10250.1 (e_value=3e-55) | Symbols: ATHSP22.0 | HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195;; (*ITAG) Solyc11g020330.1.1 (e_value=9e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:10856316-10856888 transcript_region:SL2.40ch11:10856316..10856888+ functional_description:"class IV heat shock protein (AHRD V1 ***- B6TXB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00033277g0017.1 protein AED:0.20 eAED:0.20 QI:144|0.83|0.92|1|0.41|0.46|13|705|350; (*GB) gi|225460309|ref|XP_002282574.1| (e_value=1e-45) PREDICTED: protein TIC 40, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8GT66|TIC40_PEA (e_value=7e-35) Protein TIC 40, chloroplastic OS=Pisum sativum GN=TIC40 PE=1 SV=1;; (*TAIR) AT5G16620.1 (e_value=4e-23) | Symbols: PDE120, TIC40, ATTIC40 | hydroxyproline-rich glycoprotein family protein | chr5:5450808-5454256 FORWARD LENGTH=447;; (*ITAG) Solyc11g020300.1.1 (e_value=4e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:10728385-10741180 transcript_region:SL2.40ch11:10728385..10741180- go_terms:GO:0005515 functional_description:"Translocon Tic40 (AHRD V1 ***- Q9SC41_PEA); contains Interpro domain(s) IPR006636 Heat shock chaperonin-binding "; GO:0005515 NbS00033277g0015.1 protein AED:0.18 eAED:0.20 QI:73|0.75|0.8|1|0.5|0.6|5|454|246; (*GB) gi|359493583|ref|XP_002263666.2| (e_value=1e-70) PREDICTED: peptide chain release factor 1-like [Vitis vinifera];; (*TAIR) AT1G33330.1 (e_value=2e-57) | Symbols: | Class I peptide chain release factor | chr1:12084968-12086238 FORWARD LENGTH=257;; (*ITAG) Solyc11g020590.1.1 (e_value=8e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11620106-11626050 transcript_region:SL2.40ch11:11620106..11626050+ go_terms:GO:0006415 functional_description:"Peptide chain release factor-like protein (AHRD V1 *-*- Q8S0P6_ORYSJ); contains Interpro domain(s) IPR000352 Class I peptide chain release factor "; GO:0006415 NbS00033277g0006.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.16|1|1|6|0|118 NbS00007496g0010.1 protein AED:0.22 eAED:0.22 QI:214|0.91|0.84|1|0.83|0.76|13|0|1037; (*GB) gi|225461570|ref|XP_002282857.1| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At3g07100-like [Vitis vinifera];; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=0.0) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2;; (*TAIR) AT3G07100.1 (e_value=0.0) | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein transport family protein | chr3:2245689-2250077 REVERSE LENGTH=1038;; (*ITAG) Solyc02g082220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00007496g0009.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|1|1|5|0|457; (*GB) gi|225431667|ref|XP_002263740.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 7 [Vitis vinifera];; (*SWP) sp|Q9FN02|PPP7_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1;; (*TAIR) AT5G63870.1 (e_value=0.0) | Symbols: PP7, ATPP7 | serine/threonine phosphatase 7 | chr5:25561336-25562908 REVERSE LENGTH=413;; (*ITAG) Solyc02g082230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40502105-40508058 transcript_region:SL2.40ch02:40502105..40508058- go_terms:GO:0019904 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 ***- D7MQI5_ARALY); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0019904 NbS00001135g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|0|0.33|3|48|92; (*GB) gi|357514399|ref|XP_003627488.1| (e_value=8e-25) hypothetical protein MTR_8g023650 [Medicago truncatula]; NbS00033058g0003.1 protein AED:0.07 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|225424180|ref|XP_002280452.1| (e_value=8e-43) PREDICTED: putative fasciclin-like arabinogalactan protein 20-like [Vitis vinifera];; (*SWP) sp|Q9FGW0|FLA20_ARATH (e_value=2e-26) Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana GN=FLA20 PE=3 SV=1;; (*TAIR) AT5G40940.1 (e_value=1e-27) | Symbols: FLA20 | putative fasciclin-like arabinogalactan protein 20 | chr5:16406656-16407930 REVERSE LENGTH=424;; (*ITAG) Solyc05g008320.1.1 (e_value=3e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2695060-2696130 transcript_region:SL2.40ch05:2695060..2696130+ functional_description:"Fasciclin-like arabinogalactan protein (AHRD V1 ***- B9N201_POPTR); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00033058g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|360; (*GB) gi|225424178|ref|XP_002280443.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C9A2|PP112_ARATH (e_value=3e-174) Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1;; (*TAIR) AT1G71060.1 (e_value=2e-175) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26805651-26807183 REVERSE LENGTH=510;; (*ITAG) Solyc05g008330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2696673-2698238 transcript_region:SL2.40ch05:2696673..2698238- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE8_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00061051g0005.1 protein AED:0.19 eAED:0.19 QI:6|0.71|0.87|0.87|0.71|0.87|8|405|504; (*GB) gi|225441840|ref|XP_002278289.1| (e_value=0.0) PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Vitis vinifera];; (*SWP) sp|O65628|CTU2_ARATH (e_value=5e-160) Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=3;; (*TAIR) AT4G35910.1 (e_value=3e-161) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr4:17008817-17011014 REVERSE LENGTH=458;; (*ITAG) Solyc10g080110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60832206-60836760 transcript_region:SL2.40ch10:60832206..60836760- functional_description:"Cytoplasmic tRNA 2-thiolation protein 2 (AHRD V1 ***- CTU2_ARATH); contains Interpro domain(s) IPR019407 Thiouridylase, cytoplasmic, subunit 2 "; NbS00052195g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.44|0.77|0.5|0.44|9|646|281; (*GB) gi|225427923|ref|XP_002275216.1| (e_value=2e-90) PREDICTED: translocon-associated protein subunit alpha [Vitis vinifera];; (*SWP) sp|P45434|SSRA_ARATH (e_value=1e-61) Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3;; (*TAIR) AT2G16595.1 (e_value=7e-66) | Symbols: | Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251;; (*ITAG) Solyc10g054880.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51516079-51520265 transcript_region:SL2.40ch10:51516079..51520265+ go_terms:GO:0005048 functional_description:"Translocon-associated protein alpha subunit (AHRD V1 ***- B6SRQ1_MAIZE); contains Interpro domain(s) IPR005595 Translocon-associated protein (TRAP), alpha subunit "; GO:0005048 NbS00016749g0007.1 protein AED:0.24 eAED:0.31 QI:15|0.63|0.66|0.91|0.36|0.33|12|772|427; (*GB) gi|225458900|ref|XP_002285434.1| (e_value=4e-143) PREDICTED: uncharacterized protein KIAA0930 homolog [Vitis vinifera];; (*TAIR) AT1G59520.1 (e_value=1e-130) | Symbols: CW7 | CW7 | chr1:21861589-21866016 FORWARD LENGTH=388;; (*ITAG) Solyc04g077560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60115384-60124520 transcript_region:SL2.40ch04:60115384..60124520- functional_description:"MKIAA0930 protein (Fragment) (AHRD V1 *-*- Q69ZV3_MOUSE); contains Interpro domain(s) IPR019141 Protein of unknown function DUF2045 "; NbS00037995g0007.1 protein AED:0.35 eAED:0.49 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|225446416|ref|XP_002275728.1| (e_value=2e-20) PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera];; (*SWP) sp|Q9S758|SPL5_ARATH (e_value=4e-16) Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1;; (*TAIR) AT3G15270.1 (e_value=3e-17) | Symbols: SPL5 | squamosa promoter binding protein-like 5 | chr3:5140624-5141256 REVERSE LENGTH=181;; (*ITAG) Solyc07g053810.2.1 (e_value=3e-21) genomic_reference:SL2.40ch07 gene_region:59554791-59557127 transcript_region:SL2.40ch07:59554791..59557127- go_terms:GO:0005634 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00037995g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|418; (*GB) gi|224095515|ref|XP_002310404.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O49447|ADT3_ARATH (e_value=0.0) ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=AAC3 PE=1 SV=1;; (*TAIR) AT4G28390.1 (e_value=0.0) | Symbols: AAC3, ATAAC3 | ADP/ATP carrier 3 | chr4:14041486-14042781 REVERSE LENGTH=379;; (*ITAG) Solyc07g053830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59571961-59574722 transcript_region:SL2.40ch07:59571961..59574722+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00037995g0008.1 protein AED:0.13 eAED:0.13 QI:161|0.89|0.85|1|0.84|0.9|20|129|809; (*GB) gi|224132916|ref|XP_002327911.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G03780.2 (e_value=0.0) | Symbols: TPX2 | targeting protein for XKLP2 | chr1:947785-951696 REVERSE LENGTH=758;; (*ITAG) Solyc10g008210.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2325581-2332352 transcript_region:SL2.40ch10:2325581..2332352+ go_terms:GO:0008017 functional_description:"Os07g0507200 protein (Fragment) (AHRD V1 *-*- C7J530_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; GO:0008017 NbS00038912g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.5|1|0.71|0.62|8|0|984; (*GB) gi|359479395|ref|XP_002271257.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243147 [Vitis vinifera];; (*TAIR) AT5G35210.2 (e_value=2e-168) | Symbols: | metalloendopeptidases;zinc ion binding;DNA binding | chr5:13476213-13482238 REVERSE LENGTH=1539;; (*ITAG) Solyc06g074640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42572467-42579516 transcript_region:SL2.40ch06:42572467..42579516+ go_terms:GO:0003677 functional_description:"Chromodomain helicase-DNA-binding protein 3 (AHRD V1 *--* B0WBW6_CULQU); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00038912g0002.1 protein AED:0.19 eAED:0.20 QI:332|0.73|0.81|1|1|1|27|0|1010; (*GB) gi|45935135|gb|AAS79593.1| (e_value=0.0) putative adapitin protein [Ipomoea trifida];; (*SWP) sp|Q8LPL6|AP2A1_ARATH (e_value=0.0) AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1;; (*TAIR) AT5G22770.2 (e_value=0.0) | Symbols: alpha-ADR | alpha-adaptin | chr5:7579844-7588026 REVERSE LENGTH=1012;; (*ITAG) Solyc06g074650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42580360-42594085 transcript_region:SL2.40ch06:42580360..42594085- go_terms:GO:0008022 functional_description:"AP-2 complex subunit alpha (AHRD V1 ***- C0NYN0_AJECG); contains Interpro domain(s) IPR017104 Adaptor protein complex AP-2, alpha subunit "; GO:0008022 NbS00000270g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|1|1|3|0|582; (*GB) gi|222093457|gb|ACM43505.1| (e_value=0.0) polyphenoloxidase [Camellia nitidissima];; (*SWP) sp|P43309|PPO_MALDO (e_value=9e-179) Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1;; (*ITAG) Solyc02g078650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37895897-37898700 transcript_region:SL2.40ch02:37895897..37898700+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- B3WFP2_TAROF); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00004055g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|726; (*GB) gi|167600645|gb|ABZ89187.1| (e_value=0.0) putative protein [Coffea canephora];; (*SWP) sp|O64495|SDD1_ARATH (e_value=0.0) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=0.0) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc02g072370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36186824-36188907 transcript_region:SL2.40ch02:36186824..36188907- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00004055g0010.1 protein AED:0.15 eAED:0.17 QI:0|0|0|0.5|0.33|0.5|4|0|542; (*GB) gi|224116832|ref|XP_002317405.1| (e_value=2e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=1e-88) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=8e-90) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g072400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00004055g0009.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|225469306|ref|XP_002269823.1| (e_value=4e-59) PREDICTED: ycf20-like protein isoform 2 [Vitis vinifera];; (*TAIR) AT5G43050.1 (e_value=4e-56) | Symbols: NPQ6 | Protein of unknown function (DUF565) | chr5:17268404-17268880 FORWARD LENGTH=158;; (*ITAG) Solyc02g072460.1.1 (e_value=5e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36236896-36237360 transcript_region:SL2.40ch02:36236896..36237360- functional_description:"Ycf20-like protein (AHRD V1 ***- YC20L_SYNY3); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00051521g0002.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|0.66|1|1|3|0|253; (*GB) gi|225464860|ref|XP_002272206.1| (e_value=2e-108) PREDICTED: momilactone A synthase-like [Vitis vinifera];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=6e-68) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=5e-67) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc08g028690.2.1 (e_value=1e-143) genomic_reference:SL2.40ch08 gene_region:18468958-18472092 transcript_region:SL2.40ch08:18468958..18472092+ go_terms:GO:0008152,GO:0055114 functional_description:"Tasselseed2-like short-chain dehydrogenase/reductase (Fragment) (AHRD V1 ***- Q2EFE2_9POAL); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00010356g0010.1 protein AED:0.12 eAED:0.12 QI:489|0.90|0.86|1|0.90|0.95|22|419|2194; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=0.0) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=0.0) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=0.0) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00010356g0001.1 protein AED:0.20 eAED:0.20 QI:271|0|0.5|1|0|0.5|2|503|137; (*GB) gi|356520577|ref|XP_003528938.1| (e_value=6e-22) PREDICTED: UPF0369 protein C6orf57-like [Glycine max];; (*TAIR) AT5G67490.1 (e_value=1e-13) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26934368-26934694 REVERSE LENGTH=108;; (*ITAG) Solyc03g083450.1.1 (e_value=7e-59) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:46899102-46899437 transcript_region:SL2.40ch03:46899102..46899437+ go_terms:GO:0005515 functional_description:"UPF0369 protein C6orf57 (AHRD V1 -*-- CF057_HUMAN); contains Interpro domain(s) IPR012875 Protein of unknown function DUF1674 "; GO:0005515 NbS00010356g0008.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|121489775|emb|CAK18859.1| (e_value=3e-21) Putative RING-H2 finger protein precursor [Phillyrea latifolia];; (*TAIR) AT5G53110.1 (e_value=3e-19) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc03g083460.2.1 (e_value=8e-32) genomic_reference:SL2.40ch03 gene_region:46900432-46904401 transcript_region:SL2.40ch03:46900432..46904401+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003851g0014.1 protein AED:0.25 eAED:0.25 QI:53|0.33|0.5|1|1|1|4|0|279; (*GB) gi|5381253|dbj|BAA82306.1| (e_value=8e-156) peroxidase [Nicotiana tabacum];; (*SWP) sp|A7NY33|PER4_VITVI (e_value=2e-117) Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1;; (*TAIR) AT5G05340.1 (e_value=6e-118) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc05g052280.2.1 (e_value=1e-147) genomic_reference:SL2.40ch05 gene_region:61706113-61709182 transcript_region:SL2.40ch05:61706113..61709182- go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- B9VRK9_CAPAN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00005940g0003.1 protein AED:0.18 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|169647575|gb|ACA61784.1| (e_value=7e-15) SKP1-like protein 2 [Petunia x hybrida];; (*ITAG) Solyc03g112710.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57118059-57118514 transcript_region:SL2.40ch03:57118059..57118514+ go_terms:GO:0005515 functional_description:"SKP1-like protein 1 (AHRD V1 ***- B2LUR1_MALDO); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00005940g0008.1 protein AED:0.22 eAED:0.26 QI:0|0.6|0.16|1|0.6|0.5|6|0|630; (*GB) gi|12229631|sp|O24145.1|4CL1_TOBAC (e_value=0.0) RecName: Full=4-coumarate--CoA ligase 1; Short=4CL 1; AltName: Full=4-coumaroyl-CoA synthase 1;; (*SWP) sp|O24145|4CL1_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=0.0) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc03g117870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00005940g0012.1 protein AED:0.28 eAED:0.34 QI:0|0|0|0.8|0|0.2|5|0|402; (*GB) gi|54288525|gb|AAV31725.1| (e_value=6e-63) R1 [Solanum nigrum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=3e-58) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*ITAG) Solyc05g007610.2.1 (e_value=3e-48) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00005940g0011.1 protein AED:0.45 eAED:0.70 QI:0|0|0|1|0|0|2|0|72 NbS00055955g0004.1 protein AED:0.12 eAED:0.12 QI:260|0.25|0.2|1|0|0.2|5|0|424; (*GB) gi|147859636|emb|CAN83117.1| (e_value=1e-29) hypothetical protein VITISV_017709 [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=1e-19) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=7e-21) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc01g065740.2.1 (e_value=3e-101) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006877g0005.1 protein AED:0.41 eAED:0.54 QI:213|0.5|0.2|1|0.25|0.4|5|0|129 NbS00011917g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225444780|ref|XP_002279914.1| (e_value=5e-70) PREDICTED: protein ELF4-LIKE 4 [Vitis vinifera];; (*SWP) sp|Q570U6|EF4L4_ARATH (e_value=2e-54) Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1;; (*TAIR) AT1G17455.2 (e_value=2e-55) | Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997932-5998276 FORWARD LENGTH=114;; (*ITAG) Solyc07g041340.1.1 (e_value=5e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:49758322-49758651 transcript_region:SL2.40ch07:49758322..49758651- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKI7_SOLTU); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00018864g0009.1 protein AED:0.09 eAED:0.09 QI:178|0.6|0.5|1|0.4|0.5|6|176|668; (*GB) gi|225431495|ref|XP_002274844.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265977 [Vitis vinifera];; (*SWP) sp|Q8CTA4|CSD_STAES (e_value=2e-16) Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1;; (*ITAG) Solyc11g005860.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:687944-690811 transcript_region:SL2.40ch11:687944..690811+ go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase (AHRD V1 **-- A4A4I5_9GAMM); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00018864g0010.1 protein AED:0.53 eAED:0.61 QI:0|0.25|0|0.8|1|1|5|0|142; (*GB) gi|225431485|ref|XP_002274676.1| (e_value=2e-20) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*TAIR) AT5G64600.1 (e_value=5e-22) | Symbols: | O-fucosyltransferase family protein | chr5:25825178-25827931 FORWARD LENGTH=522;; (*ITAG) Solyc11g005870.1.1 (e_value=5e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:691719-702561 transcript_region:SL2.40ch11:691719..702561- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00048116g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|352; (*GB) gi|225452564|ref|XP_002280597.1| (e_value=2e-106) PREDICTED: U-box domain-containing protein 40 [Vitis vinifera];; (*SWP) sp|Q9FL17|PUB40_ARATH (e_value=1e-61) U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2;; (*TAIR) AT5G40140.1 (e_value=9e-63) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr5:16057347-16058999 FORWARD LENGTH=550;; (*ITAG) Solyc02g087200.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44246109-44247554 transcript_region:SL2.40ch02:44246109..44247554- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 40 (AHRD V1 **-- PUB40_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00032632g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|173; (*GB) gi|147838102|emb|CAN60928.1| (e_value=2e-27) hypothetical protein VITISV_008356 [Vitis vinifera];; (*TAIR) AT3G21700.3 (e_value=2e-20) | Symbols: SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=292;; (*ITAG) Solyc12g005840.1.1 (e_value=7e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:474797-477406 transcript_region:SL2.40ch12:474797..477406- go_terms:GO:0007264,GO:0015031,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 *-*- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005622 NbS00000671g0035.1 protein AED:0.04 eAED:0.04 QI:323|0.85|0.87|1|0.85|0.75|8|1087|728; (*GB) gi|225455320|ref|XP_002271917.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera];; (*SWP) sp|Q498F0|WDR44_XENLA (e_value=1e-51) WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1;; (*TAIR) AT5G24320.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc03g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46322576-46326439 transcript_region:SL2.40ch03:46322576..46326439+ go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7MSZ0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00000671g0038.1 protein AED:0.10 eAED:0.11 QI:3|0.5|0|1|0.5|0.33|3|0|856; (*GB) gi|225455336|ref|XP_002276600.1| (e_value=0.0) PREDICTED: importin subunit beta-1-like [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=4e-180) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT5G53480.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00000671g0021.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|0.66|1|1|3|341|69; (*ITAG) Solyc06g052020.2.1 (e_value=1e-12) genomic_reference:SL2.40ch06 gene_region:32168342-32169633 transcript_region:SL2.40ch06:32168342..32169633- functional_description:"Unknown Protein (AHRD V1)"; NbS00000671g0031.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|59 NbS00000671g0009.1 protein AED:0.21 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|423; (*GB) gi|302143931|emb|CBI23036.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P52409|E13B_WHEAT (e_value=1e-111) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT5G24318.2 (e_value=4e-164) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:8282390-8283956 REVERSE LENGTH=452;; (*ITAG) Solyc03g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46334527-46335794 transcript_region:SL2.40ch03:46334527..46335794+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6TY63_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00000671g0037.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|6|495|342; (*GB) gi|302143930|emb|CBI23035.3| (e_value=6e-140) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SM23|ACBP1_ARATH (e_value=3e-139) Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2;; (*TAIR) AT5G53470.1 (e_value=2e-140) | Symbols: ACBP1, ACBP | acyl-CoA binding protein 1 | chr5:21710497-21712391 FORWARD LENGTH=338;; (*ITAG) Solyc03g082910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46336367-46340909 transcript_region:SL2.40ch03:46336367..46340909+ go_terms:GO:0000062,GO:0032791 functional_description:"Acyl-CoA-binding domain-containing protein 6 (AHRD V1 **-* B6T724_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0000062,GO:0032791 NbS00000671g0036.1 protein AED:0.41 eAED:0.48 QI:0|0.5|0|1|0.5|0.33|3|0|222; (*GB) gi|302143933|emb|CBI23038.3| (e_value=1e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|P81760|TL17_ARATH (e_value=2e-91) Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2;; (*TAIR) AT5G53490.1 (e_value=1e-92) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21723488-21724621 REVERSE LENGTH=236;; (*ITAG) Solyc03g082890.2.1 (e_value=2e-115) genomic_reference:SL2.40ch03 gene_region:46330916-46333715 transcript_region:SL2.40ch03:46330916..46333715+ go_terms:GO:0005515 functional_description:"Pentapeptide repeat protein (AHRD V1 *-*- B4WQI2_9SYNE); contains Interpro domain(s) IPR001646 Pentapeptide repeat "; GO:0005515 NbS00000671g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|799; (*GB) gi|253740260|gb|ACT34764.1| (e_value=0.0) subtilisin-like protease preproenzyme [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-167) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=0.0) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc04g078740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61000501-61003148 transcript_region:SL2.40ch04:61000501..61003148+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q38708_ALNGL); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00000671g0034.1 protein AED:0.09 eAED:0.09 QI:142|1|1|1|1|1|4|297|167; (*GB) gi|225425898|ref|XP_002266725.1| (e_value=5e-61) PREDICTED: uncharacterized protein LOC100244197 [Vitis vinifera];; (*TAIR) AT5G24314.1 (e_value=2e-51) | Symbols: PDE225, PTAC7 | plastid transcriptionally active7 | chr5:8277750-8279099 FORWARD LENGTH=161;; (*ITAG) Solyc03g082970.2.1 (e_value=7e-106) genomic_reference:SL2.40ch03 gene_region:46366017-46370485 transcript_region:SL2.40ch03:46366017..46370485- functional_description:"PDE225/PTAC7 (AHRD V1 ***- D7M329_ARALY)"; NbS00000671g0042.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.57|1|1|0.85|7|0|571; (*GB) gi|729623|sp|Q03685.1|BIP5_TOBAC (e_value=0.0) RecName: Full=Luminal-binding protein 5; Short=BiP 5; AltName: Full=78 kDa glucose-regulated protein homolog 5; Short=GRP-78-5; Flags: Precursor;; (*SWP) sp|Q03685|BIP5_TOBAC (e_value=0.0) Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc03g082920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46341372-46345339 transcript_region:SL2.40ch03:46341372..46345339- go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00000671g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.57|0.25|1|1|1|8|0|814; (*GB) gi|225464716|ref|XP_002263052.1| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9MA15|Y1960_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1;; (*TAIR) AT1G79600.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29950105-29952516 REVERSE LENGTH=711;; (*ITAG) Solyc04g083010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64056480-64061311 transcript_region:SL2.40ch04:64056480..64061311- go_terms:GO:0006468 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENTR); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0006468 NbS00000671g0033.1 protein AED:0.19 eAED:0.19 QI:0|0.77|0.8|1|0.55|0.8|10|364|387; (*GB) gi|255588292|ref|XP_002534559.1| (e_value=1e-176) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|P49599|P2C57_ARATH (e_value=2e-159) Protein phosphatase 2C 57 OS=Arabidopsis thaliana GN=PPH1 PE=2 SV=2;; (*TAIR) AT4G27800.1 (e_value=2e-160) | Symbols: TAP38, PPH1 | thylakoid-associated phosphatase 38 | chr4:13852013-13854091 REVERSE LENGTH=388;; (*ITAG) Solyc03g082960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46362082-46365783 transcript_region:SL2.40ch03:46362082..46365783- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00000671g0027.1 protein AED:0.21 eAED:0.27 QI:0|0|0|1|1|1|2|0|222 NbS00000671g0003.1 protein AED:0.19 eAED:0.50 QI:355|0|0|1|0|1|2|0|85 NbS00000671g0017.1 protein AED:0.67 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|113 NbS00013332g0011.1 protein AED:0.08 eAED:0.08 QI:143|0.83|0.57|0.85|0.66|0.85|7|0|498; (*GB) gi|224069945|ref|XP_002303090.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZM7|PIF1_ARATH (e_value=9e-54) Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1;; (*TAIR) AT2G20180.3 (e_value=7e-55) | Symbols: PIL5 | phytochrome interacting factor 3-like 5 | chr2:8704276-8706538 REVERSE LENGTH=478;; (*ITAG) Solyc06g008030.2.1 (e_value=2e-131) genomic_reference:SL2.40ch06 gene_region:1865425-1869982 transcript_region:SL2.40ch06:1865425..1869982- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0010313 NbS00013332g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.66|1|0.6|0.66|6|540|120; (*GB) gi|356548121|ref|XP_003542452.1| (e_value=1e-30) PREDICTED: zinc finger HIT domain-containing protein 3-like [Glycine max];; (*TAIR) AT4G28820.2 (e_value=3e-20) | Symbols: | HIT-type Zinc finger family protein | chr4:14230815-14232287 REVERSE LENGTH=172;; (*ITAG) Solyc06g008020.2.1 (e_value=8e-41) genomic_reference:SL2.40ch06 gene_region:1860555-1864743 transcript_region:SL2.40ch06:1860555..1864743+ functional_description:"Zinc finger family protein (AHRD V1 ***- D7MD81_ARALY); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; NbS00013332g0108.1 protein AED:0.08 eAED:0.10 QI:159|0.66|0.75|1|0.66|0.5|4|273|195 NbS00013332g0107.1 protein AED:0.17 eAED:0.17 QI:239|1|1|1|0.85|0.8|15|307|625 NbC25618318g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|2346984|dbj|BAA21926.1| (e_value=3e-47) ZPT2-9 [Petunia x hybrida];; (*SWP) sp|Q42410|ZAT12_ARATH (e_value=2e-24) Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=3e-31) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc03g093870.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:48983889-48984413 transcript_region:SL2.40ch03:48983889..48984413+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00001406g0001.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|1|1|4|0|658; (*GB) gi|255576913|ref|XP_002529342.1| (e_value=0.0) ubiquitin fusion degradaton protein, putative [Ricinus communis];; (*SWP) sp|Q92890|UFD1_HUMAN (e_value=1e-22) Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3;; (*TAIR) AT4G15420.1 (e_value=0.0) | Symbols: | Ubiquitin fusion degradation UFD1 family protein | chr4:8823822-8825949 FORWARD LENGTH=561;; (*ITAG) Solyc07g048120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56637380-56644852 transcript_region:SL2.40ch07:56637380..56644852+ go_terms:GO:0006508,GO:0006511 functional_description:"Ubiquitin fusion degradation protein 1 (AHRD V1 ***- C5FJE2_NANOT); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 "; GO:0006508,GO:0006511 NbS00025810g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|365189290|dbj|BAL42332.1| (e_value=2e-49) Heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P35016|ENPL_CATRO (e_value=2e-46) Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1;; (*TAIR) AT4G24190.2 (e_value=2e-47) | Symbols: SHD, AtHsp90.7, AtHsp90-7 | Chaperone protein htpG family protein | chr4:12551902-12555851 REVERSE LENGTH=823;; (*ITAG) Solyc04g081570.2.1 (e_value=4e-51) genomic_reference:SL2.40ch04 gene_region:63110553-63116088 transcript_region:SL2.40ch04:63110553..63116088- go_terms:GO:0042623,GO:0050750 functional_description:"Chaperone protein htpG (AHRD V1 **-- HTPG_MYCA1); contains Interpro domain(s) IPR015566 Molecular chaperone, heat shock protein, endoplasmin "; GO:0042623,GO:0050750 NbS00025810g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|0|0|2|0|109; (*GB) gi|257062631|gb|ACV40328.1| (e_value=7e-48) RNA polymerase beta subunit [Inga punctata];; (*SWP) sp|A7Y3B6|RPOC1_IPOPU (e_value=3e-46) DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea GN=rpoC1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=1e-45) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc01g017470.1.1 (e_value=5e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23953063-23953488 transcript_region:SL2.40ch01:23953063..23953488+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta' (AHRD V1 ***- RPOC1_SOLLC); contains Interpro domain(s) IPR000722 RNA polymerase, alpha subunit "; GO:0006350 NbS00045473g0003.1 protein AED:0.22 eAED:0.22 QI:60|0.66|0.75|1|0.33|0.25|4|0|146; (*GB) gi|28200390|gb|AAO31792.1| (e_value=8e-85) SP3D [Solanum lycopersicum];; (*SWP) sp|Q93WI9|HD3A_ORYSJ (e_value=1e-73) Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1;; (*TAIR) AT1G65480.1 (e_value=4e-70) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc03g063100.1.1 (e_value=2e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:30564833-30568648 transcript_region:SL2.40ch03:30564833..30568648+ go_terms:GO:0008429 functional_description:"SELF PRUNING 3D"; GO:0008429 NbS00017706g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|96; (*GB) gi|225459530|ref|XP_002284460.1| (e_value=3e-18) PREDICTED: uncharacterized protein LOC100259114 [Vitis vinifera];; (*TAIR) AT4G08310.1 (e_value=3e-14) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | chr4:5249047-5252139 REVERSE LENGTH=504;; (*ITAG) Solyc00g096460.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15612136-15614634 transcript_region:SL2.40ch00:15612136..15614634+ functional_description:"AT4G08310 protein (Fragment) (AHRD V1 ***- B9DFL6_ARATH)"; NbS00019561g0007.1 protein AED:0.68 eAED:0.74 QI:236|0|0.2|0.4|1|1|5|0|154 NbS00019561g0006.1 protein AED:0.61 eAED:0.96 QI:0|0|0|0.5|1|1|6|0|213; (*GB) gi|237506885|gb|ACQ99195.1| (e_value=2e-22) betaine aldehyde dehydrogenase [Lycium barbarum];; (*SWP) sp|P17202|BADH_SPIOL (e_value=3e-19) Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT1G74920.2 (e_value=4e-19) | Symbols: ALDH10A8 | aldehyde dehydrogenase 10A8 | chr1:28139175-28142573 REVERSE LENGTH=496;; (*ITAG) Solyc06g071290.2.1 (e_value=8e-24) genomic_reference:SL2.40ch06 gene_region:40246444-40251568 transcript_region:SL2.40ch06:40246444..40251568- go_terms:GO:0004028 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00019561g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|639; (*GB) gi|359494657|ref|XP_002264130.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9LT48|PP244_ARATH (e_value=2e-148) Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1;; (*TAIR) AT3G20730.1 (e_value=1e-149) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:7247095-7248878 FORWARD LENGTH=564;; (*ITAG) Solyc02g070710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34942957-34944801 transcript_region:SL2.40ch02:34942957..34944801- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019561g0003.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|460; (*GB) gi|359474885|ref|XP_003631549.1| (e_value=8e-128) PREDICTED: disease resistance protein RPP8-like [Vitis vinifera];; (*SWP) sp|Q9SX38|DRL4_ARATH (e_value=2e-88) Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=2;; (*TAIR) AT1G50180.1 (e_value=1e-89) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc02g070750.1.1 (e_value=3e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34952100-34953371 transcript_region:SL2.40ch02:34952100..34953371- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00010718g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|0.5|0.33|3|0|594; (*GB) gi|359488761|ref|XP_003633815.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At1g27190-like [Vitis vinifera];; (*SWP) sp|O04567|Y1719_ARATH (e_value=0.0) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT3G28450.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605;; (*ITAG) Solyc02g087460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44476077-44477882 transcript_region:SL2.40ch02:44476077..44477882+ go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00009981g0004.1 protein AED:0.36 eAED:0.66 QI:0|0|0|1|1|1|2|0|106 NbS00009981g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-18) hypothetical protein [Nicotiana tabacum]; NbS00005016g0004.1 protein AED:0.10 eAED:0.10 QI:836|1|0.5|1|1|1|2|0|504; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=0.0) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=5e-80) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=4e-81) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc03g115940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59566770-59569400 transcript_region:SL2.40ch03:59566770..59569400- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00038046g0002.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|995; (*GB) gi|255537715|ref|XP_002509924.1| (e_value=0.0) serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|P25848|PHY1_CERPU (e_value=7e-35) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT1G64300.2 (e_value=0.0) | Symbols: | Protein kinase family protein | chr1:23863543-23865776 FORWARD LENGTH=717;; (*ITAG) Solyc08g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2676854-2680659 transcript_region:SL2.40ch08:2676854..2680659+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KSS6_ARALY); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0006468 NbS00004814g0006.1 protein AED:0.27 eAED:0.27 QI:361|0.66|0.5|1|0.66|0.5|4|0|216; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=3e-126) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=9e-105) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=6e-106) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=2e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00004814g0007.1 protein AED:0.30 eAED:0.36 QI:225|0.43|0.41|1|0.06|0.23|17|218|516; (*GB) gi|356557291|ref|XP_003546951.1| (e_value=6e-112) PREDICTED: uncharacterized protein LOC100785531 [Glycine max];; (*SWP) sp|Q9D8Z1|ASCC1_MOUSE (e_value=1e-14) Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1;; (*TAIR) AT3G16230.2 (e_value=3e-93) | Symbols: | Predicted eukaryotic LigT | chr3:5500563-5503303 FORWARD LENGTH=449;; (*ITAG) Solyc03g120480.2.1 (e_value=1e-179) genomic_reference:SL2.40ch03 gene_region:62916470-62924788 transcript_region:SL2.40ch03:62916470..62924788- go_terms:GO:0006265,GO:0005737,GO:0003723,GO:0005622 functional_description:"Activating signal cointegrator 1 complex subunit 1 (AHRD V1 *--- C3KHG7_ANOFI); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0006265,GO:0005737,GO:0003723,GO:0005622 NbS00009494g0005.1 protein AED:0.32 eAED:0.32 QI:292|0.75|0.8|1|0.25|0.4|5|203|116; (*GB) gi|147793034|emb|CAN59715.1| (e_value=2e-23) hypothetical protein VITISV_006076 [Vitis vinifera];; (*SWP) sp|Q9FQ04|XRN4_ARATH (e_value=7e-20) 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1;; (*TAIR) AT1G54490.1 (e_value=5e-21) | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947;; (*ITAG) Solyc12g089280.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00018080g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|217; (*GB) gi|147772268|emb|CAN67351.1| (e_value=2e-54) hypothetical protein VITISV_018091 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=8e-33) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc05g040050.1.1 (e_value=6e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00019157g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|369; (*GB) gi|147783361|emb|CAN72960.1| (e_value=4e-123) hypothetical protein VITISV_008500 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=4e-67) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc01g107210.2.1 (e_value=7e-80) genomic_reference:SL2.40ch01 gene_region:86612729-86614740 transcript_region:SL2.40ch01:86612729..86614740+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00019157g0035.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|0.66|0.75|4|251|253; (*GB) gi|255573107|ref|XP_002527483.1| (e_value=2e-127) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|O81760|P2C63_ARATH (e_value=2e-115) Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1;; (*TAIR) AT4G33920.1 (e_value=2e-116) | Symbols: | Protein phosphatase 2C family protein | chr4:16260876-16262703 FORWARD LENGTH=380;; (*ITAG) Solyc10g049630.1.1 (e_value=1e-128) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41774876-41777511 transcript_region:SL2.40ch10:41774876..41777511- go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00019157g0034.1 protein AED:0.32 eAED:0.33 QI:242|1|0.66|1|0.5|0.66|3|0|288; (*GB) gi|225428928|ref|XP_002262757.1| (e_value=8e-63) PREDICTED: uncharacterized protein LOC100249808 [Vitis vinifera];; (*TAIR) AT1G49850.1 (e_value=9e-34) | Symbols: | RING/U-box superfamily protein | chr1:18455326-18456444 REVERSE LENGTH=250;; (*ITAG) Solyc01g107290.2.1 (e_value=6e-109) genomic_reference:SL2.40ch01 gene_region:86643325-86647899 transcript_region:SL2.40ch01:86643325..86647899+ go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q8LJR8_SOYBN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00019157g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.42|0.25|0.87|1|1|8|56|1012; (*GB) gi|225428945|ref|XP_002263699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251578 [Vitis vinifera];; (*TAIR) AT1G49870.2 (e_value=3e-157) | Symbols: | unknown protein; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:18460911-18463557 FORWARD LENGTH=790;; (*ITAG) Solyc01g107260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86627692-86632397 transcript_region:SL2.40ch01:86627692..86632397- functional_description:"Transport protein-related (AHRD V1 *-*- Q1EPF1_MUSAC)"; NbS00019157g0006.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|255573111|ref|XP_002527485.1| (e_value=5e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19550.1 (e_value=5e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6787462-6788165 REVERSE LENGTH=110;; (*ITAG) Solyc01g107280.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:86639086-86640167 transcript_region:SL2.40ch01:86639086..86640167- functional_description:"Unknown Protein (AHRD V1)"; NbS00019157g0029.1 protein AED:0.07 eAED:0.07 QI:209|0.66|0.75|1|0.66|0.75|4|360|317; (*GB) gi|297798524|ref|XP_002867146.1| (e_value=1e-80) hypothetical protein ARALYDRAFT_491288 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=4e-26) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT4G33905.1 (e_value=2e-81) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:16254065-16255592 REVERSE LENGTH=261;; (*ITAG) Solyc01g107240.2.1 (e_value=5e-118) genomic_reference:SL2.40ch01 gene_region:86619848-86622348 transcript_region:SL2.40ch01:86619848..86622348- go_terms:GO:0016021 functional_description:"Peroxisomal membrane MPV17/PMP22-like protein (AHRD V1 *--- A8J1X1_CHLRE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00019157g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|362 NbS00019157g0030.1 protein AED:0.31 eAED:0.34 QI:0|1|0.66|1|1|1|6|0|274; (*GB) gi|224056230|ref|XP_002298766.1| (e_value=1e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XIC7|SERK2_ARATH (e_value=1e-66) Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1;; (*TAIR) AT3G43740.1 (e_value=2e-83) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:15644127-15645446 FORWARD LENGTH=218;; (*ITAG) Solyc01g107250.2.1 (e_value=4e-112) genomic_reference:SL2.40ch01 gene_region:86624587-86627235 transcript_region:SL2.40ch01:86624587..86627235- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00019157g0040.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.33|1|1|0.66|3|0|170; (*GB) gi|225429337|ref|XP_002272147.1| (e_value=3e-51) PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera];; (*TAIR) AT2G14880.1 (e_value=5e-41) | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:6393686-6394841 REVERSE LENGTH=141;; (*ITAG) Solyc01g107330.2.1 (e_value=2e-77) genomic_reference:SL2.40ch01 gene_region:86657058-86659620 transcript_region:SL2.40ch01:86657058..86659620- functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- D6VG39_9BURK); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00019157g0036.1 protein AED:0.42 eAED:0.84 QI:0|0|0|1|1|1|3|0|72 NbS00019157g0032.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|0|0|2|0|848; (*GB) gi|225429339|ref|XP_002269471.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Vitis vinifera];; (*SWP) sp|Q9LYZ9|PP362_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1;; (*TAIR) AT5G02860.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:654102-656561 FORWARD LENGTH=819;; (*ITAG) Solyc01g107320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86653841-86656492 transcript_region:SL2.40ch01:86653841..86656492- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008366g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|222822693|gb|ACM68459.1| (e_value=7e-49) stress-associated protein 9 [Solanum pennellii];; (*SWP) sp|Q9SJM6|SAP4_ARATH (e_value=8e-37) Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1;; (*TAIR) AT2G36320.1 (e_value=6e-38) | Symbols: | A20/AN1-like zinc finger family protein | chr2:15229388-15229873 FORWARD LENGTH=161;; (*ITAG) Solyc10g083460.1.1 (e_value=5e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62577522-62578001 transcript_region:SL2.40ch10:62577522..62578001+ go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00041012g0008.1 protein AED:0.01 eAED:0.01 QI:9|1|0.75|1|1|1|4|0|206; (*GB) gi|76573319|gb|ABA46764.1| (e_value=9e-123) unknown [Solanum tuberosum];; (*SWP) sp|P41129|RL132_BRANA (e_value=7e-112) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.3 (e_value=3e-111) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=2e-124) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00041012g0009.1 protein AED:0.32 eAED:0.32 QI:263|1|1|1|1|0.75|4|360|89; (*GB) gi|330318654|gb|AEC10987.1| (e_value=8e-51) acyl-CoA-binding protein [Camellia sinensis];; (*SWP) sp|O04066|ACBP_RICCO (e_value=1e-50) Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1;; (*TAIR) AT1G31812.1 (e_value=3e-43) | Symbols: ACBP6, ACBP | acyl-CoA-binding protein 6 | chr1:11411132-11412099 REVERSE LENGTH=92;; (*ITAG) Solyc08g075690.2.1 (e_value=4e-53) genomic_reference:SL2.40ch08 gene_region:56986351-56988984 transcript_region:SL2.40ch08:56986351..56988984- go_terms:GO:0004860 functional_description:"Acyl-CoA-binding protein (AHRD V1 ***- Q8RVT5_PANGI); contains Interpro domain(s) IPR000582 Acyl-CoA-binding protein, ACBP "; GO:0004860 NbS00041012g0010.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0.4|1|0.5|0.6|5|254|463; (*GB) gi|224139126|ref|XP_002326774.1| (e_value=6e-148) predicted protein [Populus trichocarpa];; (*TAIR) AT3G45900.1 (e_value=1e-121) | Symbols: | Ribonuclease P protein subunit P38-related | chr3:16874566-16875984 REVERSE LENGTH=389;; (*ITAG) Solyc08g075680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56981576-56985505 transcript_region:SL2.40ch08:56981576..56985505+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058524g0001.1 protein AED:0.21 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|434; (*GB) gi|359490387|ref|XP_002274057.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245174 [Vitis vinifera];; (*TAIR) AT4G33495.1 (e_value=0.0) | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:16111349-16112578 REVERSE LENGTH=409;; (*ITAG) Solyc06g063270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36359545-36361515 transcript_region:SL2.40ch06:36359545..36361515- go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00058524g0004.1 protein AED:0.08 eAED:0.09 QI:0|0.7|0.72|1|1|1|11|0|582; (*GB) gi|359491564|ref|XP_002280398.2| (e_value=5e-61) PREDICTED: uncharacterized protein LOC100245819 [Vitis vinifera];; (*TAIR) AT3G48710.1 (e_value=6e-52) | Symbols: | DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462;; (*ITAG) Solyc03g097490.2.1 (e_value=2e-86) genomic_reference:SL2.40ch03 gene_region:53272611-53278255 transcript_region:SL2.40ch03:53272611..53278255+ functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00058524g0002.1 protein AED:0.16 eAED:0.16 QI:926|0.66|0.75|1|0|0.5|4|299|267; (*GB) gi|241897455|gb|ACS70946.1| (e_value=7e-174) feruloyl transferase [Solanum tuberosum];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=1e-134) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT5G41040.2 (e_value=1e-135) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:16431582-16433086 FORWARD LENGTH=441;; (*ITAG) Solyc03g097500.2.1 (e_value=4e-176) genomic_reference:SL2.40ch03 gene_region:53285695-53287618 transcript_region:SL2.40ch03:53285695..53287618+ go_terms:GO:0050734,GO:0010327 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IFG0_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050734,GO:0010327 NbS00026274g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|251|618; (*GB) gi|224077382|ref|XP_002305238.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04567|Y1719_ARATH (e_value=0.0) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT1G27190.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:9446923-9448728 REVERSE LENGTH=601;; (*ITAG) Solyc05g006570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1207083-1208915 transcript_region:SL2.40ch05:1207083..1208915+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00054836g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|46399269|gb|AAS92255.1| (e_value=9e-160) putative pyridoxine biosynthesis protein isoform A [Nicotiana tabacum];; (*SWP) sp|Q9FT25|PDX1_PHAVU (e_value=1e-149) Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1;; (*TAIR) AT5G01410.1 (e_value=2e-149) | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309;; (*ITAG) Solyc06g081980.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44239265-44240194 transcript_region:SL2.40ch06:44239265..44240194+ go_terms:GO:0046982,GO:0042803 functional_description:"Pyridoxal biosynthesis lyase pdxS (AHRD V1 ***- D0MQW5_PHYIN); contains Interpro domain(s) IPR001852 Vitamin B6 biosynthesis protein "; GO:0046982,GO:0042803 NbS00022085g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|0.66|1|1|3|0|136; (*GB) gi|13925881|gb|AAK49454.1|AF304374_1 (e_value=5e-73) cellulose synthase catalytic subunit [Nicotiana alata];; (*SWP) sp|O48947|CESA2_ARATH (e_value=4e-72) Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1;; (*TAIR) AT4G39350.1 (e_value=3e-73) | Symbols: CESA2, ATH-A, ATCESA2 | cellulose synthase A2 | chr4:18297078-18301890 FORWARD LENGTH=1084;; (*ITAG) Solyc11g005560.1.1 (e_value=7e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:419067-425651 transcript_region:SL2.40ch11:419067..425651+ go_terms:GO:0016020,GO:0008270 functional_description:"Cellulose synthase (AHRD V1 ***- B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020,GO:0008270 NbS00022085g0015.1 protein AED:0.00 eAED:0.00 QI:913|1|0.5|1|1|1|2|0|425; (*GB) gi|224094749|ref|XP_002310220.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g062800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29157365-29159581 transcript_region:SL2.40ch02:29157365..29159581- functional_description:"F-box family protein (AHRD V1 ***- D7MPC5_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00022085g0014.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|8|0|671; (*GB) gi|359476577|ref|XP_002267433.2| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK4-like [Vitis vinifera];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc02g062790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29153654-29156862 transcript_region:SL2.40ch02:29153654..29156862- go_terms:GO:0004672 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00060963g0003.1 protein AED:0.00 eAED:0.00 QI:104|1|1|1|1|1|2|593|323; (*GB) gi|317106634|dbj|BAJ53140.1| (e_value=2e-136) JHL05D22.11 [Jatropha curcas];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=1e-43) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT2G45630.2 (e_value=4e-124) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18797089 FORWARD LENGTH=338;; (*ITAG) Solyc01g093990.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00028479g0005.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.28|1|0.66|0.57|7|0|1087; (*GB) gi|225460909|ref|XP_002278970.1| (e_value=5e-150) PREDICTED: uncharacterized protein LOC100250252 [Vitis vinifera];; (*TAIR) AT5G55100.1 (e_value=2e-55) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr5:22361281-22364664 REVERSE LENGTH=843;; (*ITAG) Solyc10g006260.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:932083-935352 transcript_region:SL2.40ch10:932083..935352+ go_terms:GO:0006396 functional_description:"Suppressor of white-apricot (AHRD V1 *--- B3P9D6_DROER); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00012706g0016.1 protein AED:0.57 eAED:0.58 QI:0|0|0|0.5|0|0.5|2|0|113; (*ITAG) Solyc11g013210.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00012706g0013.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|1|1|3|0|394; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=1e-158) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=5e-125) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=2e-161) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00012706g0010.1 protein AED:0.47 eAED:0.53 QI:0|0|0|1|1|1|2|0|71 NbS00012706g0017.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00012706g0015.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|0|0|2|0|145; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016679g0001.1 protein AED:0.54 eAED:0.71 QI:0|0|0|1|1|1|2|0|138 NbS00016679g0101.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|0.5|2|241|432 NbS00016679g0110.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.25|1|1|4|0|84 NbS00016679g0106.1 protein AED:0.39 eAED:0.74 QI:0|0|0|1|0|0|5|0|217 NbS00016679g0108.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|153 NbS00016679g0107.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.2|0|0|5|0|125 NbS00016679g0109.1 protein AED:0.46 eAED:0.63 QI:0|0|0|1|0|0|3|0|87 NbS00006009g0003.1 protein AED:0.15 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc00g023590.2.1 (e_value=1e-24) genomic_reference:SL2.40ch00 gene_region:12141025-12143724 transcript_region:SL2.40ch00:12141025..12143724+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006009g0010.1 protein AED:0.10 eAED:0.25 QI:0|0|0|1|0|0|3|0|170; (*GB) gi|57013954|ref|YP_173426.1| (e_value=1e-51) hypothetical protein NitaMp085 [Nicotiana tabacum];; (*SWP) sp|P15688|NU2M_BETVU (e_value=6e-27) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) ATCG01300.1 (e_value=2e-22) | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=93;; (*ITAG) Solyc00g125980.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:16637694-16637897 transcript_region:SL2.40ch00:16637694..16637897+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00006009g0011.1 protein AED:0.56 eAED:0.93 QI:0|0|0|1|0|0|5|0|125 NbS00022651g0005.1 protein AED:0.19 eAED:0.19 QI:159|1|1|1|1|1|4|270|351; (*GB) gi|8777512|dbj|BAA97100.1| (e_value=0.0) bZIP transcriptional activator RSG [Nicotiana tabacum];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=1e-71) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=8e-73) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc04g071160.2.1 (e_value=4e-163) genomic_reference:SL2.40ch04 gene_region:55672435-55678715 transcript_region:SL2.40ch04:55672435..55678715- go_terms:GO:0042802 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0042802 NbS00023841g0010.1 protein AED:0.09 eAED:0.31 QI:81|0.75|0.6|1|0.75|0.6|5|0|403; (*GB) gi|297744010|emb|CBI36980.3| (e_value=1e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G62300.2 (e_value=7e-21) | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 | chr3:23054247-23057081 FORWARD LENGTH=723;; (*ITAG) Solyc03g121650.2.1 (e_value=2e-69) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00023841g0012.1 protein AED:0.15 eAED:0.16 QI:361|0.5|0.4|1|0.5|0.2|5|0|724; (*GB) gi|359491584|ref|XP_002279663.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera];; (*SWP) sp|P46824|KLC_DROME (e_value=2e-15) Kinesin light chain OS=Drosophila melanogaster GN=Klc PE=1 SV=1;; (*TAIR) AT1G27500.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9551629-9553654 REVERSE LENGTH=650;; (*ITAG) Solyc03g114320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58383943-58387290 transcript_region:SL2.40ch03:58383943..58387290+ go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SPN7_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00023841g0014.1 protein AED:0.24 eAED:0.24 QI:86|0.90|0.75|1|0.54|0.66|12|924|263; (*GB) gi|209981679|gb|ACJ05392.1| (e_value=4e-50) peroxisome biogenesis factor 14 [Nicotiana tabacum];; (*SWP) sp|Q9FXT6|PEX14_ARATH (e_value=4e-38) Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2;; (*TAIR) AT5G62810.1 (e_value=3e-39) | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220323-25223571 FORWARD LENGTH=507;; (*ITAG) Solyc06g071470.2.1 (e_value=2e-67) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00025488g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.5|1|0|0.25|4|0|195; (*ITAG) Solyc01g073870.2.1 (e_value=8e-63) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00043153g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.37|1|0.85|0.87|8|0|529; (*GB) gi|225452200|ref|XP_002266771.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243984 [Vitis vinifera];; (*TAIR) AT5G40740.1 (e_value=2e-177) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741;; (*ITAG) Solyc02g093810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49096622-49102063 transcript_region:SL2.40ch02:49096622..49102063- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 ***- Q9FM25_ARATH)"; NbS00017839g0004.1 protein AED:0.14 eAED:0.14 QI:51|0.90|0.83|1|0.72|0.58|12|116|598; (*GB) gi|255549068|ref|XP_002515590.1| (e_value=0.0) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q94LW6|SUT35_ARATH (e_value=0.0) Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5 PE=2 SV=1;; (*TAIR) AT5G19600.1 (e_value=0.0) | Symbols: SULTR3;5 | sulfate transporter 3;5 | chr5:6613113-6616891 REVERSE LENGTH=634;; (*ITAG) Solyc12g006950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1379359-1384257 transcript_region:SL2.40ch12:1379359..1384257- go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- Q0WVG5_ARATH); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0016020,GO:0016021 NbS00003122g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.95|0.95|1|1|1|21|506|836; (*GB) gi|255581792|ref|XP_002531697.1| (e_value=0.0) heat shock protein, putative [Ricinus communis];; (*SWP) sp|P36183|ENPL_HORVU (e_value=0.0) Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1;; (*TAIR) AT3G07770.1 (e_value=0.0) | Symbols: Hsp89.1, AtHsp90.6, AtHsp90-6 | HEAT SHOCK PROTEIN 89.1 | chr3:2479611-2483970 FORWARD LENGTH=799;; (*ITAG) Solyc07g047790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56327803-56334029 transcript_region:SL2.40ch07:56327803..56334029- go_terms:GO:0005524,GO:0006950 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_IDILO); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00017133g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|255550890|ref|XP_002516493.1| (e_value=2e-33) Oleosin, putative [Ricinus communis];; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=2e-25) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT2G25890.1 (e_value=3e-28) | Symbols: | Oleosin family protein | chr2:11037435-11037884 FORWARD LENGTH=149;; (*ITAG) Solyc08g066040.1.1 (e_value=2e-51) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:51710171-51710593 transcript_region:SL2.40ch08:51710171..51710593+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q8LL70_THECC); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00017133g0005.1 protein AED:0.11 eAED:0.11 QI:206|1|0.8|1|0|0.4|5|408|198; (*GB) gi|359476159|ref|XP_002275514.2| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100257795 [Vitis vinifera];; (*TAIR) AT1G76480.2 (e_value=2e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20890.1). | chr1:28692193-28693403 REVERSE LENGTH=231;; (*ITAG) Solyc08g066030.2.1 (e_value=4e-90) genomic_reference:SL2.40ch08 gene_region:51705680-51709716 transcript_region:SL2.40ch08:51705680..51709716+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022548g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.57|0.71|0.83|0.71|7|0|263; (*GB) gi|356553680|ref|XP_003545181.1| (e_value=2e-63) PREDICTED: probable polygalacturonase At3g15720-like [Glycine max];; (*SWP) sp|Q9SFB7|QRT2_ARATH (e_value=6e-57) Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2;; (*TAIR) AT3G07970.1 (e_value=5e-58) | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439;; (*ITAG) Solyc12g009420.1.1 (e_value=4e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2697739-2702193 transcript_region:SL2.40ch12:2697739..2702193- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **** O81246_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00022548g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.25|1|0.66|0.75|4|0|448; (*GB) gi|225445491|ref|XP_002285177.1| (e_value=2e-152) PREDICTED: uncharacterized protein LOC100259301 [Vitis vinifera];; (*TAIR) AT2G26680.1 (e_value=1e-144) | Symbols: | CONTAINS InterPro DOMAIN/s: Methyltransferase FkbM (InterPro:IPR006342); Has 1073 Blast hits to 1073 proteins in 243 species: Archae - 45; Bacteria - 509; Metazoa - 0; Fungi - 4; Plants - 60; Viruses - 4; Other Eukaryotes - 451 (source: NCBI BLink). | chr2:11344003-11345288 REVERSE LENGTH=319;; (*ITAG) Solyc12g009430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2704557-2706331 transcript_region:SL2.40ch12:2704557..2706331+ functional_description:"Methyltransferase FkbM family protein expressed (AHRD V1 ***- Q10I28_ORYSJ); contains Interpro domain(s) IPR006342 Methyltransferase FkbM "; NbS00024943g0004.1 protein AED:0.27 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|252; (*GB) gi|224096480|ref|XP_002334697.1| (e_value=1e-13) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q9STE5|R13L2_ARATH (e_value=3e-13) Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=2 SV=1;; (*TAIR) AT3G46710.1 (e_value=2e-14) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17206489-17209032 REVERSE LENGTH=847;; (*ITAG) Solyc05g008070.2.1 (e_value=1e-17) genomic_reference:SL2.40ch05 gene_region:2500501-2503179 transcript_region:SL2.40ch05:2500501..2503179+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00051233g0006.1 protein AED:0.15 eAED:0.21 QI:0|0.5|0.33|1|0.37|0.33|9|0|453; (*GB) gi|225435510|ref|XP_002285548.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera];; (*TAIR) AT5G12960.1 (e_value=0.0) | Symbols: | Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4097788-4101518 FORWARD LENGTH=865;; (*ITAG) Solyc12g100120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65308503-65313592 transcript_region:SL2.40ch12:65308503..65313592+ functional_description:"Acetyl-CoA carboxylase-like protein (AHRD V1 *-*- Q8ABH3_BACTN); contains Interpro domain(s) IPR012878 Protein of unknown function DUF1680 "; NbS00051233g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|178; (*GB) gi|88604736|gb|ABD46739.1| (e_value=1e-100) leucine-rich repeat protein [Nicotiana tabacum];; (*SWP) sp|Q00874|DR100_ARATH (e_value=1e-53) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT3G20820.1 (e_value=9e-71) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:7280930-7282027 FORWARD LENGTH=365;; (*ITAG) Solyc11g056680.1.1 (e_value=3e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45139882-45140976 transcript_region:SL2.40ch11:45139882..45140976+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00003299g0005.1 protein AED:0.00 eAED:0.00 QI:8|1|0.5|1|0|0|2|353|36 NbS00003299g0006.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|4|430|169; (*GB) gi|225434486|ref|XP_002275144.1| (e_value=5e-67) PREDICTED: mitochondrial import inner membrane translocase subunit tim22 [Vitis vinifera];; (*SWP) sp|Q6BT35|TIM22_DEBHA (e_value=6e-18) Mitochondrial import inner membrane translocase subunit TIM22 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1;; (*TAIR) AT3G10110.1 (e_value=6e-65) | Symbols: MEE67 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:3116225-3117378 FORWARD LENGTH=173;; (*ITAG) Solyc11g068980.1.1 (e_value=5e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50641610-50644011 transcript_region:SL2.40ch11:50641610..50644011- go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit tim22 (AHRD V1 ***- B6U2A3_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00003299g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|3|142|566; (*GB) gi|225431902|ref|XP_002276533.1| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q8VZF1|AEE7_ARATH (e_value=0.0) Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1;; (*TAIR) AT3G16910.1 (e_value=0.0) | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | chr3:5773231-5775411 REVERSE LENGTH=569;; (*ITAG) Solyc12g099360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64880055-64882904 transcript_region:SL2.40ch12:64880055..64882904+ go_terms:GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858 NbS00030033g0003.1 protein AED:0.11 eAED:0.12 QI:0|0|0.25|0.75|0|0.5|4|0|195; (*GB) gi|14031051|gb|AAK52085.1| (e_value=3e-77) peroxidase [Nicotiana tabacum];; (*SWP) sp|Q96512|PER9_ARATH (e_value=8e-69) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1;; (*TAIR) AT1G44970.1 (e_value=6e-70) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc04g080760.2.1 (e_value=1e-82) genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00053529g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|225462703|ref|XP_002267400.1| (e_value=2e-90) PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=3e-56) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=2e-57) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc03g007460.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2014935-2016125 transcript_region:SL2.40ch03:2014935..2016125- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_TOBAC); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00017617g0017.1 protein AED:0.25 eAED:0.26 QI:0|1|0.6|1|1|1|5|0|425; (*GB) gi|225440270|ref|XP_002278843.1| (e_value=0.0) PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q91YP0|L2HDH_MOUSE (e_value=2e-37) L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1;; (*TAIR) AT3G56840.1 (e_value=2e-176) | Symbols: | FAD-dependent oxidoreductase family protein | chr3:21044317-21046177 FORWARD LENGTH=483;; (*ITAG) Solyc10g079440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60290304-60293383 transcript_region:SL2.40ch10:60290304..60293383- go_terms:GO:0016491 functional_description:"FAD-dependent oxidoreductase family protein (AHRD V1 ***- D7LVK2_ARALY); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00017617g0019.1 protein AED:0.12 eAED:0.12 QI:186|1|1|1|1|1|8|376|229; (*GB) gi|147857564|emb|CAN82884.1| (e_value=6e-118) hypothetical protein VITISV_023155 [Vitis vinifera];; (*SWP) sp|Q8S1Z1|UTP11_ORYSJ (e_value=3e-100) Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2;; (*TAIR) AT3G60360.1 (e_value=2e-92) | Symbols: EDA14, UTP11 | embryo sac development arrest 14 | chr3:22312477-22314002 REVERSE LENGTH=228;; (*ITAG) Solyc10g079430.1.1 (e_value=7e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60285916-60289754 transcript_region:SL2.40ch10:60285916..60289754+ go_terms:GO:0030515,GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 11 (AHRD V1 ***- B6TNQ8_MAIZE); contains Interpro domain(s) IPR007144 Small-subunit processome, Utp11 "; GO:0030515,GO:0005515 NbS00017617g0013.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|111; (*GB) gi|255579958|ref|XP_002530814.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g114620.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58599779-58600084 transcript_region:SL2.40ch03:58599779..58600084+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017617g0018.1 protein AED:0.24 eAED:0.25 QI:0|1|0.90|1|0.9|0.90|11|436|470; (*GB) gi|225455748|ref|XP_002268894.1| (e_value=0.0) PREDICTED: protease 4-like [Vitis vinifera];; (*SWP) sp|P73689|SPPA_SYNY3 (e_value=1e-56) Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA PE=3 SV=1;; (*TAIR) AT1G73990.1 (e_value=0.0) | Symbols: SPPA, SPPA1 | signal peptide peptidase | chr1:27824465-27828807 FORWARD LENGTH=677;; (*ITAG) Solyc03g114640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58611730-58624215 transcript_region:SL2.40ch03:58611730..58624215+ go_terms:GO:0006508 functional_description:"Signal peptide peptidase SppA type (AHRD V1 ***- Q01NK5_SOLUE); contains Interpro domain(s) IPR004635 Peptidase S49, SppA "; GO:0006508 NbS00017617g0022.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|0.33|0.25|4|0|573; (*GB) gi|225455746|ref|XP_002268440.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Vitis vinifera];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=5e-163) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT1G18485.1 (e_value=4e-164) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970;; (*ITAG) Solyc03g114660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58628427-58631087 transcript_region:SL2.40ch03:58628427..58631087+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017617g0006.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|151; (*ITAG) Solyc06g069340.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39479244-39479717 transcript_region:SL2.40ch06:39479244..39479717+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD10 (AHRD V1 --*- Q9FKQ9_ARATH)"; NbS00017617g0021.1 protein AED:0.39 eAED:0.52 QI:0|0|0|1|0|0|2|0|252; (*GB) gi|297734119|emb|CBI15366.3| (e_value=1e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=3e-28) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT1G18485.1 (e_value=2e-29) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970;; (*ITAG) Solyc03g114660.1.1 (e_value=1e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58628427-58631087 transcript_region:SL2.40ch03:58628427..58631087+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00030020g0006.1 protein AED:0.16 eAED:0.16 QI:431|0.85|0.86|1|0.78|0.8|15|363|939; (*GB) gi|130173|sp|P04045.2|PHSL1_SOLTU (e_value=0.0) RecName: Full=Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L-1; Flags: Precursor;; (*SWP) sp|P04045|PHSL1_SOLTU (e_value=0.0) Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G29320.1 (e_value=0.0) | Symbols: | Glycosyl transferase, family 35 | chr3:11252871-11257587 FORWARD LENGTH=962;; (*ITAG) Solyc03g065340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:38799475-38808273 transcript_region:SL2.40ch03:38799475..38808273+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9SJB6_RICCO); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00046725g0001.1 protein AED:0.25 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|317448463|emb|CBI83762.1| (e_value=1e-83) transcription factor DREB2a [Nicotiana benthamiana];; (*SWP) sp|Q9LM15|RA213_ARATH (e_value=1e-43) Ethylene-responsive transcription factor RAP2-13 OS=Arabidopsis thaliana GN=RAP2-13 PE=1 SV=1;; (*TAIR) AT1G22190.1 (e_value=8e-45) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:7836245-7837030 FORWARD LENGTH=261;; (*ITAG) Solyc04g054910.2.1 (e_value=3e-60) genomic_reference:SL2.40ch04 gene_region:52554444-52556186 transcript_region:SL2.40ch04:52554444..52556186+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00031737g0003.1 protein AED:0.06 eAED:0.06 QI:44|1|1|1|1|1|3|212|165; (*GB) gi|62733643|gb|AAX95759.1| (e_value=1e-64) T10O24.15, related [Solanum lycopersicum];; (*TAIR) AT5G50090.1 (e_value=2e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20369961-20370878 FORWARD LENGTH=159;; (*ITAG) Solyc06g071320.2.1 (e_value=2e-67) genomic_reference:SL2.40ch06 gene_region:40276476-40277431 transcript_region:SL2.40ch06:40276476..40277431- functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00025464g0015.1 protein AED:0.27 eAED:0.27 QI:1409|0.75|0.66|1|0.37|0.44|9|599|222; (*GB) gi|359494386|ref|XP_002267956.2| (e_value=1e-113) PREDICTED: putative callose synthase 8-like [Vitis vinifera];; (*SWP) sp|Q9LUD7|CALS8_ARATH (e_value=6e-112) Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2;; (*TAIR) AT3G14570.2 (e_value=4e-113) | Symbols: GSL04 | glucan synthase-like 4 | chr3:4892643-4902628 FORWARD LENGTH=1950;; (*ITAG) Solyc07g061920.2.1 (e_value=8e-127) genomic_reference:SL2.40ch07 gene_region:62024605-62036385 transcript_region:SL2.40ch07:62024605..62036385+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00025464g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|142 NbS00025464g0018.1 protein AED:0.15 eAED:0.15 QI:0|1|0.91|1|0.81|0.91|12|0|739; (*GB) gi|359494388|ref|XP_002267637.2| (e_value=0.0) PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=0.0) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT1G53590.1 (e_value=0.0) | Symbols: NTMC2TYPE6.1, NTMC2T6.1 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751;; (*ITAG) Solyc07g061950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62039788-62047399 transcript_region:SL2.40ch07:62039788..62047399- functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- D7L359_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00017718g0025.1 protein AED:0.22 eAED:0.22 QI:129|0.91|0.69|1|0.83|0.92|13|0|458; (*GB) gi|297808013|ref|XP_002871890.1| (e_value=3e-168) tryptophan/tyrosine permease family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P0AAD5|TYRP_SHIFL (e_value=2e-21) Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1;; (*TAIR) AT5G19500.1 (e_value=4e-166) | Symbols: | Tryptophan/tyrosine permease | chr5:6579019-6581699 FORWARD LENGTH=505;; (*ITAG) Solyc11g072170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52484977-52493458 transcript_region:SL2.40ch11:52484977..52493458+ functional_description:"Tyrosine-specific transport protein (AHRD V1 ***- D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; NbS00017718g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|698; (*GB) gi|255564442|ref|XP_002523217.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26920.1 (e_value=9e-148) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr2:11489648-11491588 FORWARD LENGTH=646;; (*ITAG) Solyc11g072160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52481271-52483475 transcript_region:SL2.40ch11:52481271..52483475+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LFE2_ARALY); contains Interpro domain(s) IPR009060 UBA-like "; NbS00017718g0021.1 protein AED:0.26 eAED:0.51 QI:0|0|0|1|1|1|3|0|119; (*GB) gi|48209907|gb|AAT40501.1| (e_value=4e-37) Tryptophan/tyrosine permease family protein [Solanum demissum];; (*TAIR) AT5G19500.1 (e_value=1e-21) | Symbols: | Tryptophan/tyrosine permease | chr5:6579019-6581699 FORWARD LENGTH=505;; (*ITAG) Solyc11g072170.1.1 (e_value=2e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52484977-52493458 transcript_region:SL2.40ch11:52484977..52493458+ functional_description:"Tyrosine-specific transport protein (AHRD V1 ***- D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; NbS00017718g0023.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|357; (*GB) gi|225452192|ref|XP_002266268.1| (e_value=0.0) PREDICTED: cytosolic Fe-S cluster assembly factor nubp1-like [Vitis vinifera];; (*SWP) sp|A7RUD5|NUBP1_NEMVE (e_value=6e-125) Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Nematostella vectensis GN=v1g236650 PE=3 SV=1;; (*TAIR) AT5G50960.1 (e_value=0.0) | Symbols: NBP35, ATNBP35 | nucleotide binding protein 35 | chr5:20734267-20735824 FORWARD LENGTH=350;; (*ITAG) Solyc12g096690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63852475-63854787 transcript_region:SL2.40ch12:63852475..63854787- go_terms:GO:0005524 functional_description:"Cytosolic Fe-S cluster assembly factor nbp35 (AHRD V1 ***- NBP35_EMENI); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0005524 NbS00017718g0022.1 protein AED:0.28 eAED:0.29 QI:29|0.8|0.83|1|1|1|6|0|228; (*GB) gi|356499289|ref|XP_003518474.1| (e_value=2e-83) PREDICTED: dr1-associated corepressor-like [Glycine max];; (*SWP) sp|A0JPP1|NC2A_RAT (e_value=3e-30) Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1;; (*TAIR) AT5G19490.1 (e_value=4e-57) | Symbols: | Histone superfamily protein | chr5:6576769-6578273 REVERSE LENGTH=264;; (*ITAG) Solyc11g072150.1.1 (e_value=5e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52469132-52473125 transcript_region:SL2.40ch11:52469132..52473125- go_terms:GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 *--- B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00017718g0029.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|144; (*GB) gi|356510758|ref|XP_003524101.1| (e_value=4e-30) PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Glycine max];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=2e-24) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=2e-25) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=2e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017718g0028.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|4|0|494; (*GB) gi|225428334|ref|XP_002279974.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=0.0) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00047529g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|315; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=1e-118) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=1e-69) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT5G62220.1 (e_value=6e-113) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00059084g0012.1 protein AED:0.12 eAED:0.13 QI:0|1|0.8|1|0.75|0.8|5|0|364; (*GB) gi|225428249|ref|XP_002279442.1| (e_value=1e-124) PREDICTED: GDSL esterase/lipase At5g55050-like [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=6e-67) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=5e-68) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc01g111960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89866618-89868839 transcript_region:SL2.40ch01:89866618..89868839- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00059084g0011.1 protein AED:0.14 eAED:0.22 QI:26|0.57|0.25|1|0.42|0.25|8|0|465; (*GB) gi|255575031|ref|XP_002528421.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=1e-136) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc01g111970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89869360-89872814 transcript_region:SL2.40ch01:89869360..89872814- go_terms:GO:0055114 functional_description:"Laccase 1a (AHRD V1 **-- B9IG56_POPTR); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00059084g0010.1 protein AED:0.17 eAED:0.17 QI:360|1|0.83|1|1|1|6|246|564; (*GB) gi|225428253|ref|XP_002279474.1| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK9-like [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=6e-56) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT1G21590.1 (e_value=1e-68) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr1:7566613-7569694 REVERSE LENGTH=756;; (*ITAG) Solyc01g111950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89863123-89866285 transcript_region:SL2.40ch01:89863123..89866285+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00034235g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|225458485|ref|XP_002284108.1| (e_value=2e-36) PREDICTED: dof zinc finger protein DOF3.4 [Vitis vinifera];; (*SWP) sp|Q9FGD6|DOF58_ARATH (e_value=2e-31) Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1;; (*TAIR) AT5G66940.1 (e_value=1e-32) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26727989-26728666 REVERSE LENGTH=225;; (*ITAG) Solyc04g079570.1.1 (e_value=8e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61583905-61584624 transcript_region:SL2.40ch04:61583905..61584624- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q0PY33_SOLLC); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00040542g0006.1 protein AED:0.09 eAED:0.09 QI:206|1|1|1|0.83|0.71|7|398|465; (*GB) gi|255543315|ref|XP_002512720.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G15980.1 (e_value=0.0) | Symbols: NDF1, NDH48 | NDH-dependent cyclic electron flow 1 | chr1:5489314-5491199 FORWARD LENGTH=461;; (*ITAG) Solyc03g116870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60179636-60182347 transcript_region:SL2.40ch03:60179636..60182347- functional_description:"Glycosyl transferase family 9 (AHRD V1 ***- A0YHY3_LYNSP)"; NbS00040542g0009.1 protein AED:0.26 eAED:0.26 QI:355|1|0.83|1|0.6|0.5|6|0|399; (*GB) gi|255576987|ref|XP_002529378.1| (e_value=1e-133) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=4e-45) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G57970.2 (e_value=3e-117) | Symbols: | DNA glycosylase superfamily protein | chr5:23467316-23468910 FORWARD LENGTH=347;; (*ITAG) Solyc03g116880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60185228-60191947 transcript_region:SL2.40ch03:60185228..60191947+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00052829g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|116; (*GB) gi|356538439|ref|XP_003537711.1| (e_value=3e-47) PREDICTED: F-box protein SKIP31-like [Glycine max];; (*SWP) sp|Q9FHK0|SKI31_ARATH (e_value=1e-34) F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1;; (*TAIR) AT5G45360.1 (e_value=1e-35) | Symbols: | F-box family protein | chr5:18384783-18386670 REVERSE LENGTH=316;; (*ITAG) Solyc08g075380.2.1 (e_value=4e-51) genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018086g0011.1 protein AED:0.07 eAED:0.07 QI:289|1|1|1|0.6|0.5|6|453|675; (*GB) gi|75156737|sp|Q8LLE5.1|FPP_SOLLC (e_value=0.0) RecName: Full=Filament-like plant protein; Short=LeFPP;; (*SWP) sp|Q8LLE5|FPP_SOLLC (e_value=0.0) Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1;; (*TAIR) AT3G05270.2 (e_value=7e-94) | Symbols: | Plant protein of unknown function (DUF869) | chr3:1500803-1502926 REVERSE LENGTH=615;; (*ITAG) Solyc11g012860.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5649548-5653623 transcript_region:SL2.40ch11:5649548..5653623- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 ***- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00018086g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.77|0.88|1|1|9|535|531; (*GB) gi|224082298|ref|XP_002306638.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9MBA1|CAO_ARATH (e_value=0.0) Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1;; (*TAIR) AT1G44446.1 (e_value=0.0) | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr1:16848664-16851152 REVERSE LENGTH=536;; (*ITAG) Solyc11g012850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5644237-5648033 transcript_region:SL2.40ch11:5644237..5648033- go_terms:GO:0008152,GO:0055114 functional_description:"Chlorophyllide a oxygenase (AHRD V1 ***- B6TZB6_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0008152,GO:0055114 NbS00018086g0012.1 protein AED:0.16 eAED:0.17 QI:0|1|0.8|1|1|1|5|242|417; (*GB) gi|224063104|ref|XP_002300994.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZH0|LYM1_ARATH (e_value=5e-174) LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1;; (*TAIR) AT1G21880.2 (e_value=4e-175) | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682526 FORWARD LENGTH=416;; (*ITAG) Solyc11g012870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5656257-5659159 transcript_region:SL2.40ch11:5656257..5659159- go_terms:GO:0006508,GO:0016998 functional_description:"LysM domain containing protein (AHRD V1 *-*- Q2R2V0_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0006508,GO:0016998 NbS00018086g0021.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|0.33|0.5|4|0|220; (*GB) gi|255550574|ref|XP_002516337.1| (e_value=8e-118) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C521|UGAL1_ARATH (e_value=5e-112) UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1;; (*TAIR) AT1G77610.1 (e_value=4e-113) | Symbols: | EamA-like transporter family protein | chr1:29165489-29167486 FORWARD LENGTH=336;; (*ITAG) Solyc11g012880.1.1 (e_value=1e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5664177-5666555 transcript_region:SL2.40ch11:5664177..5666555+ go_terms:GO:0016020 functional_description:"Solute carrier family 35 member E1 (AHRD V1 **-- B7ZTJ7_XENTR); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0016020 NbS00018086g0020.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|1|1|3|0|93; (*GB) gi|255550574|ref|XP_002516337.1| (e_value=4e-20) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C521|UGAL1_ARATH (e_value=3e-20) UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1;; (*TAIR) AT1G77610.1 (e_value=3e-21) | Symbols: | EamA-like transporter family protein | chr1:29165489-29167486 FORWARD LENGTH=336;; (*ITAG) Solyc06g060370.2.1 (e_value=4e-21) genomic_reference:SL2.40ch06 gene_region:34748707-34755278 transcript_region:SL2.40ch06:34748707..34755278- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B4G1R1_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00018086g0022.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.6|1|0.5|0.6|5|435|318; (*GB) gi|225459573|ref|XP_002285860.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g21780 [Vitis vinifera];; (*SWP) sp|Q9XHZ8|Y1178_ARATH (e_value=4e-173) BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1;; (*TAIR) AT1G21780.2 (e_value=3e-174) | Symbols: | BTB/POZ domain-containing protein | chr1:7652476-7653866 FORWARD LENGTH=326;; (*ITAG) Solyc11g012840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5640360-5643153 transcript_region:SL2.40ch11:5640360..5643153+ go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7KKU4_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00018086g0023.1 protein AED:0.66 eAED:0.66 QI:0|0|0|1|0|0|2|0|365; (*GB) gi|255544149|ref|XP_002513137.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19990.1 (e_value=1e-179) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:6965671-6967102 FORWARD LENGTH=425;; (*ITAG) Solyc11g006360.1.1 (e_value=7e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1074434-1074772 transcript_region:SL2.40ch11:1074434..1074772- functional_description:"Genomic DNA chromosome 3 P1 clone MZE19 (AHRD V1 ***- Q9LHE6_ARATH)"; NbS00056525g0004.1 protein AED:0.21 eAED:0.21 QI:121|0.81|0.75|1|0.63|0.66|12|0|461; (*GB) gi|297738015|emb|CBI27216.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O49434|AAH_ARATH (e_value=0.0) Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=1 SV=2;; (*TAIR) AT4G20070.1 (e_value=0.0) | Symbols: ATAAH, AAH | allantoate amidohydrolase | chr4:10861548-10864529 FORWARD LENGTH=525;; (*ITAG) Solyc02g068380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32909088-32915018 transcript_region:SL2.40ch02:32909088..32915018- go_terms:GO:0008233,GO:0047652 functional_description:"N-carbamoyl-L-amino-acid amidohydrolase (AHRD V1 **-- Q1LHR1_RALME); contains Interpro domain(s) IPR010158 Amidase, hydantoinase/carbamoylase "; GO:0008233,GO:0047652 NbS00003446g0107.1 protein AED:0.27 eAED:0.27 QI:119|0.5|0.66|1|0.5|0.33|3|0|405 NbS00003446g0108.1 protein AED:0.24 eAED:0.29 QI:0|0.44|0.4|0.7|0.55|0.7|10|0|328 NbS00016856g0010.1 protein AED:0.17 eAED:0.17 QI:146|1|1|1|1|1|14|465|622; (*GB) gi|350538115|ref|NP_001234583.1| (e_value=0.0) glucose-6-phosphate isomerase [Solanum lycopersicum];; (*SWP) sp|B2J5F1|G6PI_NOSP7 (e_value=0.0) Glucose-6-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgi PE=3 SV=1;; (*TAIR) AT4G24620.1 (e_value=0.0) | Symbols: PGI1, PGI | phosphoglucose isomerase 1 | chr4:12708972-12712610 REVERSE LENGTH=613;; (*ITAG) Solyc04g076090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58635109-58645353 transcript_region:SL2.40ch04:58635109..58645353+ go_terms:GO:0004347 functional_description:"Glucose-6-phosphate isomerase 2"; GO:0004347 NbS00016911g0010.1 protein AED:0.16 eAED:0.16 QI:268|1|1|1|0|0.25|4|165|292; (*GB) gi|379055945|emb|CCG06554.1| (e_value=2e-177) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=2e-165) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=1e-166) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc03g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00016911g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.71|0.37|0.87|0.42|0.37|8|0|412; (*GB) gi|225455370|ref|XP_002277586.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257134 [Vitis vinifera];; (*TAIR) AT3G49250.1 (e_value=5e-137) | Symbols: DMS3, IDN1 | defective in meristem silencing 3 | chr3:18258613-18260803 REVERSE LENGTH=420;; (*ITAG) Solyc06g051990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32148973-32156014 transcript_region:SL2.40ch06:32148973..32156014- go_terms:GO:0005515 functional_description:"At5g24280-like protein (Fragment) (AHRD V1 *-*- Q3YI82_ARALY)"; GO:0005515 NbS00028407g0014.1 protein AED:0.04 eAED:0.04 QI:115|1|1|1|1|1|5|439|394; (*GB) gi|224132668|ref|XP_002321379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q503W7|ATD1B_DANRE (e_value=2e-92) ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2;; (*TAIR) AT5G53540.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403;; (*ITAG) Solyc06g053160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00028407g0003.1 protein AED:0.20 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|147765904|emb|CAN77892.1| (e_value=3e-31) hypothetical protein VITISV_016272 [Vitis vinifera];; (*ITAG) Solyc03g082610.1.1 (e_value=6e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:46079272-46079895 transcript_region:SL2.40ch03:46079272..46079895+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00028407g0015.1 protein AED:0.08 eAED:0.08 QI:0|0.71|0.87|1|0.57|0.62|8|80|697; (*GB) gi|126567465|dbj|BAF48331.1| (e_value=0.0) putative yellow stripe-like protein [Nicotiana tabacum];; (*SWP) sp|Q6R3K9|YSL2_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1;; (*TAIR) AT5G24380.1 (e_value=0.0) | Symbols: YSL2, ATYSL2 | YELLOW STRIPE like 2 | chr5:8324098-8326525 FORWARD LENGTH=664;; (*ITAG) Solyc03g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46082668-46086918 transcript_region:SL2.40ch03:46082668..46086918- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00049396g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|388; (*GB) gi|326511198|dbj|BAJ87613.1| (e_value=2e-50) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G21150.1 (e_value=5e-38) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc04g072550.1.1 (e_value=1e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00036010g0010.1 protein AED:0.01 eAED:0.01 QI:165|1|1|1|0.5|0.33|3|371|374; (*GB) gi|224143813|ref|XP_002325083.1| (e_value=9e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9BU70|NAP1_HUMAN (e_value=3e-40) Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2;; (*TAIR) AT4G28020.1 (e_value=2e-143) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13933389-13935249 REVERSE LENGTH=351;; (*ITAG) Solyc11g007750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1975333-1977163 transcript_region:SL2.40ch11:1975333..1977163- functional_description:"Potassium-tellurite ethidium and proflavin transporter (AHRD V1 *--- C5S1A7_9PAST); contains Interpro domain(s) IPR001378 Uncharacterised protein family UPF0066 "; NbS00036010g0009.1 protein AED:0.15 eAED:0.15 QI:589|1|0.8|1|1|1|10|247|559; (*GB) gi|350539745|ref|NP_001234519.1| (e_value=0.0) 3-phosphoinositide-dependent protein kinase-1 [Solanum lycopersicum];; (*SWP) sp|Q4V3C8|PDPK2_ARATH (e_value=0.0) 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana GN=PDPK2 PE=1 SV=1;; (*TAIR) AT3G10540.1 (e_value=0.0) | Symbols: | 3-phosphoinositide-dependent protein kinase | chr3:3289916-3292429 FORWARD LENGTH=486;; (*ITAG) Solyc11g007760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1978088-1983128 transcript_region:SL2.40ch11:1978088..1983128- go_terms:GO:0006468 functional_description:"Protein kinase 3 (AHRD V1 ***- D3BKW3_POLPA); contains Interpro domain(s) IPR015746 Protein Kinase-1, 3-phosphoinositide dependent "; GO:0006468 NbS00036010g0008.1 protein AED:0.22 eAED:0.22 QI:45|1|1|1|0.57|0.75|8|300|282; (*GB) gi|51971543|dbj|BAD44436.1| (e_value=7e-96) putative ribosome recycling factor [Arabidopsis thaliana];; (*SWP) sp|A9GGK7|RRF_SORC5 (e_value=4e-33) Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr PE=3 SV=1;; (*TAIR) AT3G01800.1 (e_value=3e-98) | Symbols: | Ribosome recycling factor | chr3:286020-287543 FORWARD LENGTH=267;; (*ITAG) Solyc11g007740.1.1 (e_value=3e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1970357-1974751 transcript_region:SL2.40ch11:1970357..1974751+ go_terms:GO:0006412,GO:0005737 functional_description:"Ribosome-recycling factor (AHRD V1 ***- Q1K328_DESAC); contains Interpro domain(s) IPR015998 Ribosome recycling factor, bacterial-like "; GO:0006412,GO:0005737 NbS00008618g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.6|1|1|1|10|0|999; (*GB) gi|225437714|ref|XP_002273228.1| (e_value=0.0) PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=0.0) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=0.0) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc01g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00042866g0006.1 protein AED:0.06 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|451; (*GB) gi|255559366|ref|XP_002520703.1| (e_value=1e-177) gtpase activating protein, putative [Ricinus communis];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=3e-18) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT4G03100.1 (e_value=4e-168) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr4:1374361-1375913 FORWARD LENGTH=430;; (*ITAG) Solyc09g074340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61638622-61643762 transcript_region:SL2.40ch09:61638622..61643762+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00042866g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|62 NbS00042866g0002.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|131; (*ITAG) Solyc09g074350.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61646409-61646918 transcript_region:SL2.40ch09:61646409..61646918- functional_description:"Unknown Protein (AHRD V1)"; NbS00059081g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.62|0.52|1|0.43|0.41|17|20|612; (*GB) gi|224089867|ref|XP_002308843.1| (e_value=4e-108) argonaute protein group [Populus trichocarpa];; (*SWP) sp|Q0JF58|AGO4B_ORYSJ (e_value=1e-100) Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1;; (*TAIR) AT5G21150.1 (e_value=3e-89) | Symbols: AGO9 | Argonaute family protein | chr5:7193472-7198113 FORWARD LENGTH=896;; (*ITAG) Solyc06g073530.1.1 (e_value=4e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41717052-41722026 transcript_region:SL2.40ch06:41717052..41722026+ go_terms:GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00059081g0010.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.71|1|0.83|0.71|7|0|297; (*GB) gi|255540431|ref|XP_002511280.1| (e_value=2e-159) Protein bem46, putative [Ricinus communis];; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=1e-59) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1 PE=2 SV=1;; (*TAIR) AT4G24760.1 (e_value=5e-128) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12761482-12763564 REVERSE LENGTH=365;; (*ITAG) Solyc03g111770.2.1 (e_value=2e-179) genomic_reference:SL2.40ch03 gene_region:56452663-56457279 transcript_region:SL2.40ch03:56452663..56457279- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00059081g0011.1 protein AED:0.42 eAED:0.49 QI:267|0|0.5|1|1|1|2|0|129; (*GB) gi|225456828|ref|XP_002278591.1| (e_value=8e-60) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Vitis vinifera];; (*TAIR) AT3G01690.1 (e_value=2e-58) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:256753-258379 FORWARD LENGTH=361;; (*ITAG) Solyc03g111770.2.1 (e_value=3e-64) genomic_reference:SL2.40ch03 gene_region:56452663-56457279 transcript_region:SL2.40ch03:56452663..56457279- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00019621g0017.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|0.75|4|0|348; (*GB) gi|359493337|ref|XP_002278219.2| (e_value=1e-140) PREDICTED: GDSL esterase/lipase At1g71691-like [Vitis vinifera];; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=1e-122) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.2 (e_value=8e-124) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951480 REVERSE LENGTH=384;; (*ITAG) Solyc11g032050.1.1 (e_value=6e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:20989195-20993340 transcript_region:SL2.40ch11:20989195..20993340+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00019621g0016.1 protein AED:0.08 eAED:0.08 QI:276|1|1|1|0.94|0.94|18|403|963; (*GB) gi|224141985|ref|XP_002324341.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O15042|SR140_HUMAN (e_value=3e-102) U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens GN=U2SURP PE=1 SV=2;; (*TAIR) AT5G25060.1 (e_value=0.0) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00019621g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.4|0.33|0.83|0.2|0|6|0|257; (*GB) gi|356515422|ref|XP_003526399.1| (e_value=9e-89) PREDICTED: cellulose synthase-like protein G1-like [Glycine max];; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=2e-83) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.2 (e_value=2e-84) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951480 REVERSE LENGTH=384;; (*ITAG) Solyc11g032060.1.1 (e_value=5e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:21090654-21092869 transcript_region:SL2.40ch11:21090654..21092869+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00019621g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|166 NbS00006536g0005.1 protein AED:0.06 eAED:0.06 QI:127|1|1|1|0.8|0.83|6|228|286; (*GB) gi|225453778|ref|XP_002270462.1| (e_value=3e-176) PREDICTED: serine/threonine-protein kinase Aurora-3 [Vitis vinifera];; (*SWP) sp|O64629|AUR3_ARATH (e_value=1e-167) Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1;; (*TAIR) AT2G45490.1 (e_value=1e-168) | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747658-18749044 REVERSE LENGTH=288;; (*ITAG) Solyc04g009330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2772793-2776023 transcript_region:SL2.40ch04:2772793..2776023+ go_terms:GO:0004713 functional_description:"Serine/threonine-protein kinase 12 (AHRD V1 **** B6SI45_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004713 NbS00012430g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|225426580|ref|XP_002279973.1| (e_value=7e-38) PREDICTED: transcription factor MYC4 [Vitis vinifera];; (*SWP) sp|Q9FIP9|ATR2_ARATH (e_value=6e-22) Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1;; (*TAIR) AT5G46760.1 (e_value=5e-23) | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:18974231-18976009 FORWARD LENGTH=592;; (*ITAG) Solyc08g008600.2.1 (e_value=9e-62) genomic_reference:SL2.40ch08 gene_region:2998162-3001351 transcript_region:SL2.40ch08:2998162..3001351+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00012430g0003.1 protein AED:0.26 eAED:0.32 QI:0|0|0|0.8|0|0|5|0|231; (*GB) gi|193734712|gb|ACF19982.1| (e_value=3e-28) MYC2 [Hevea brasiliensis];; (*SWP) sp|O23090|BH014_ARATH (e_value=8e-13) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=6e-14) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc08g008600.2.1 (e_value=8e-51) genomic_reference:SL2.40ch08 gene_region:2998162-3001351 transcript_region:SL2.40ch08:2998162..3001351+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00012430g0104.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|379 NbS00012430g0105.1 protein AED:0.54 eAED:0.94 QI:0|-1|0|1|-1|1|1|0|86 NbS00012430g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|209 NbS00012430g0121.1 protein AED:0.19 eAED:0.19 QI:351|1|1|1|1|1|7|279|322 NbS00012430g0128.1 protein AED:0.37 eAED:0.37 QI:0|0.85|0.87|1|0.85|0.87|8|0|294 NbS00012430g0106.1 protein AED:0.41 eAED:0.45 QI:113|1|0.5|1|0|0|2|0|138 NbS00012430g0123.1 protein AED:0.07 eAED:0.15 QI:75|0|0|1|0|0|2|0|298 NbS00012430g0124.1 protein AED:0.40 eAED:0.87 QI:0|0|0|1|0|0|2|0|179 NbS00018935g0006.1 protein AED:0.29 eAED:0.30 QI:329|0.83|0.71|1|0.5|0.57|7|0|595; (*GB) gi|225446879|ref|XP_002279893.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 15 [Vitis vinifera];; (*SWP) sp|Q8L4B0|GAUTF_ARATH (e_value=0.0) Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1;; (*TAIR) AT3G58790.1 (e_value=0.0) | Symbols: GAUT15 | galacturonosyltransferase 15 | chr3:21742455-21745972 REVERSE LENGTH=540;; (*ITAG) Solyc07g055930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61175343-61181935 transcript_region:SL2.40ch07:61175343..61181935- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IA47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00018935g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.66|0.77|0.62|0.66|9|0|309; (*GB) gi|387940594|gb|AFK13160.1| (e_value=2e-175) shatterproof [Nicotiana benthamiana];; (*SWP) sp|Q40872|AG_PANGI (e_value=5e-113) Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1;; (*TAIR) AT4G18960.1 (e_value=1e-110) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252;; (*ITAG) Solyc07g055920.2.1 (e_value=5e-138) genomic_reference:SL2.40ch07 gene_region:61164844-61174720 transcript_region:SL2.40ch07:61164844..61174720+ go_terms:GO:0005515 functional_description:"Agamous MADS-box transcription factor (AHRD V1 **-- B2CDE2_9ASPA); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00007310g0020.1 protein AED:0.01 eAED:0.01 QI:244|1|1|1|0.8|0.66|6|717|128; (*GB) gi|332205181|gb|AEE36479.1| (e_value=1e-84) TBP-associated factor 13 [Solanum melongena];; (*SWP) sp|Q54CN8|TAF13_DICDI (e_value=6e-31) Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1;; (*TAIR) AT1G02680.1 (e_value=1e-56) | Symbols: TAF13 | TBP-associated factor 13 | chr1:581084-581919 FORWARD LENGTH=126;; (*ITAG) Solyc02g078300.2.1 (e_value=1e-89) genomic_reference:SL2.40ch02 gene_region:37621714-37624964 transcript_region:SL2.40ch02:37621714..37624964- go_terms:GO:0008022 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 ***- D3BV86_POLPA); contains Interpro domain(s) IPR003195 Transcription initiation factor IID, 18 kDa subunit "; GO:0008022 NbS00007310g0027.1 protein AED:0.04 eAED:0.08 QI:0|0|0|1|1|1|2|0|174; (*GB) gi|225455268|ref|XP_002273657.1| (e_value=2e-46) PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84WW2|6PGL5_ARATH (e_value=5e-43) Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1;; (*TAIR) AT5G24400.1 (e_value=4e-44) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc03g082580.2.1 (e_value=3e-69) genomic_reference:SL2.40ch03 gene_region:46048220-46052563 transcript_region:SL2.40ch03:46048220..46052563+ go_terms:GO:0017057 functional_description:"Glucosamine-6-phosphate deaminase (AHRD V1 ***- NAGB_ACHLI); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00007310g0024.1 protein AED:0.10 eAED:0.10 QI:0|0.25|0|0.8|0.5|0.6|5|0|412; (*GB) gi|225446335|ref|XP_002273904.1| (e_value=2e-93) PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=2e-72) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.1 (e_value=1e-73) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926110-8927722 FORWARD LENGTH=490;; (*ITAG) Solyc02g078330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37634979-37638173 transcript_region:SL2.40ch02:37634979..37638173- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007310g0008.1 protein AED:0.23 eAED:0.23 QI:114|1|0.66|1|1|1|3|0|481; (*GB) gi|255556037|ref|XP_002519053.1| (e_value=0.0) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q9ZPH2|GRS17_ARATH (e_value=0.0) Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1;; (*TAIR) AT4G04950.1 (e_value=0.0) | Symbols: | thioredoxin family protein | chr4:2517882-2519924 REVERSE LENGTH=488;; (*ITAG) Solyc02g078360.2.1 (e_value=8e-171) genomic_reference:SL2.40ch02 gene_region:37652619-37657447 transcript_region:SL2.40ch02:37652619..37657447- go_terms:GO:0005080 functional_description:"Thioredoxin family protein (AHRD V1 **-- D7M1V6_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0005080 NbS00007310g0026.1 protein AED:0.27 eAED:0.27 QI:0|1|0.87|1|0.42|0.75|8|0|212; (*GB) gi|255556047|ref|XP_002519058.1| (e_value=5e-86) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G33793.1 (e_value=3e-78) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14297107-14299217 FORWARD LENGTH=212;; (*ITAG) Solyc02g078280.2.1 (e_value=2e-100) genomic_reference:SL2.40ch02 gene_region:37598243-37601345 transcript_region:SL2.40ch02:37598243..37601345- functional_description:"Myosin-like protein (AHRD V1 *-*- Q84ZN0_ORYSJ)"; NbS00007310g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|255556043|ref|XP_002519056.1| (e_value=1e-81) rnf5, putative [Ricinus communis];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=5e-49) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=4e-45) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc02g078320.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37628709-37629404 transcript_region:SL2.40ch02:37628709..37629404+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00007310g0028.1 protein AED:0.06 eAED:0.06 QI:123|0.5|0|1|0.5|0.66|3|0|512; (*GB) gi|359483464|ref|XP_003632962.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84JR3|PP334_ARATH (e_value=1e-176) Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1;; (*TAIR) AT4G21705.1 (e_value=8e-178) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492;; (*ITAG) Solyc02g078350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37647670-37649730 transcript_region:SL2.40ch02:37647670..37649730+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007310g0006.1 protein AED:0.63 eAED:0.63 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|225460055|ref|XP_002274036.1| (e_value=2e-43) PREDICTED: molybdopterin synthase sulfur carrier subunit [Vitis vinifera];; (*SWP) sp|Q6YVX4|MOC2A_ORYSJ (e_value=2e-35) Molybdopterin synthase sulfur carrier subunit OS=Oryza sativa subsp. japonica GN=Os02g0558300 PE=3 SV=1;; (*TAIR) AT4G10100.3 (e_value=1e-30) | Symbols: CNX7, SIR5 | co-factor for nitrate, reductase and xanthine dehydrogenase 7 | chr4:6309091-6309381 FORWARD LENGTH=96;; (*ITAG) Solyc02g090010.1.1 (e_value=1e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:46267262-46267450 transcript_region:SL2.40ch02:46267262..46267450- go_terms:GO:0042802,GO:0030366 functional_description:"Molybdopterin synthase sulfur carrier subunit (AHRD V1 **** MOC2A_ORYSJ); contains Interpro domain(s) IPR003749 ThiamineS "; GO:0042802,GO:0030366 NbS00031145g0011.1 protein AED:0.14 eAED:0.14 QI:140|0.88|0.8|1|0.77|0.9|10|319|255; (*GB) gi|359806318|ref|NP_001241480.1| (e_value=1e-117) uncharacterized protein LOC100797411 [Glycine max];; (*SWP) sp|Q9LYR5|FKB19_ARATH (e_value=1e-113) Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1;; (*TAIR) AT5G13410.1 (e_value=1e-114) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr5:4299830-4301706 REVERSE LENGTH=256;; (*ITAG) Solyc00g006810.2.1 (e_value=7e-107) genomic_reference:SL2.40ch00 gene_region:5786753-5791411 transcript_region:SL2.40ch00:5786753..5791411+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q8DJW8_THEEB); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00031145g0017.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|0.5|0.66|3|0|86; (*GB) gi|225425304|ref|XP_002273119.1| (e_value=5e-53) PREDICTED: 40S ribosomal protein S27-2 [Vitis vinifera];; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=2e-53) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2;; (*TAIR) AT3G61110.1 (e_value=2e-54) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86;; (*ITAG) Solyc01g008090.2.1 (e_value=1e-54) genomic_reference:SL2.40ch01 gene_region:2223864-2226034 transcript_region:SL2.40ch01:2223864..2226034- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- Q3HVK9_SOLTU); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00031145g0012.1 protein AED:0.47 eAED:0.47 QI:18|0|0|0.66|0|0.33|3|0|61; (*ITAG) Solyc02g081840.2.1 (e_value=2e-26) genomic_reference:SL2.40ch02 gene_region:40211209-40215580 transcript_region:SL2.40ch02:40211209..40215580+ go_terms:GO:0005515 functional_description:"MMP37-like protein mitochondrial (AHRD V1 ***- C1C198_9MAXI); contains Interpro domain(s) IPR015222 Mitochondrial matrix Mmp37 "; GO:0005515 NbS00031145g0019.1 protein AED:0.03 eAED:0.07 QI:0|1|0|1|1|1|2|0|343; (*GB) gi|224053587|ref|XP_002297886.1| (e_value=6e-28) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9M644|LEP_ARATH (e_value=2e-26) Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1;; (*TAIR) AT5G13910.1 (e_value=2e-27) | Symbols: LEP | Integrase-type DNA-binding superfamily protein | chr5:4482450-4483085 REVERSE LENGTH=211;; (*ITAG) Solyc11g045680.1.1 (e_value=4e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:40372028-40373244 transcript_region:SL2.40ch11:40372028..40373244- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6SU49_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00031145g0014.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|1122; (*GB) gi|255543250|ref|XP_002512688.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G13390.1 (e_value=0.0) | Symbols: NEF1 | no exine formation 1 | chr5:4292809-4296572 FORWARD LENGTH=1123;; (*ITAG) Solyc00g006830.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:5827877-5838053 transcript_region:SL2.40ch00:5827877..5838053- functional_description:"No exine formation-1 (AHRD V1 **-- Q9LYR7_ARATH)"; NbS00028563g0001.1 protein AED:0.23 eAED:0.31 QI:226|1|0.5|1|1|1|2|85|126 NbS00007114g0008.1 protein AED:0.14 eAED:0.14 QI:168|1|0.8|1|0.75|1|5|512|378; (*GB) gi|224085153|ref|XP_002307509.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=1e-162) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=1e-163) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc04g012030.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4361229-4366187 transcript_region:SL2.40ch04:4361229..4366187+ go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00048062g0011.1 protein AED:0.11 eAED:0.17 QI:26|0.66|0.75|0.93|0.66|0.68|16|12|1030; (*GB) gi|359487562|ref|XP_002279731.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249389 [Vitis vinifera];; (*SWP) sp|Q7LBC6|KDM3B_HUMAN (e_value=3e-19) Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2;; (*TAIR) AT1G09060.3 (e_value=0.0) | Symbols: | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr1:2921235-2925254 REVERSE LENGTH=944;; (*ITAG) Solyc02g078790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38005510-38014354 transcript_region:SL2.40ch02:38005510..38014354+ go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7KIX8_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00048062g0010.1 protein AED:0.24 eAED:0.26 QI:273|0.83|0.78|1|0.72|0.68|19|383|1050; (*GB) gi|255560798|ref|XP_002521412.1| (e_value=0.0) katanin P80 subunit, putative [Ricinus communis];; (*SWP) sp|Q8H0T9|KTNB1_ARATH (e_value=8e-154) Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3;; (*TAIR) AT1G61210.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:22564785-22571555 FORWARD LENGTH=1179;; (*ITAG) Solyc02g078800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38023943-38037310 transcript_region:SL2.40ch02:38023943..38037310+ go_terms:GO:0046982 functional_description:"WD-repeat protein (AHRD V1 *--- B0C2Q9_ACAM1); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0046982 NbS00004519g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=6e-61) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=9e-56) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=7e-57) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=4e-75) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00011789g0011.1 protein AED:0.17 eAED:0.17 QI:201|1|0.87|1|1|1|8|483|533; (*GB) gi|75291596|sp|Q6Q8A5.1|HXK2_TOBAC (e_value=0.0) RecName: Full=Hexokinase-2, chloroplastic; AltName: Full=NtHxK2; Flags: Precursor;; (*SWP) sp|Q6Q8A5|HXK2_TOBAC (e_value=0.0) Hexokinase-2, chloroplastic OS=Nicotiana tabacum GN=HXK2 PE=2 SV=1;; (*TAIR) AT1G47840.1 (e_value=0.0) | Symbols: HXK3 | hexokinase 3 | chr1:17616243-17618859 REVERSE LENGTH=493;; (*ITAG) Solyc04g081400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62985915-62990125 transcript_region:SL2.40ch04:62985915..62990125+ go_terms:GO:0004340 functional_description:"Hexokinase 1 (AHRD V1 ***- B6V3C0_CUCME); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbS00011789g0015.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|126; (*GB) gi|116786965|gb|ABK24321.1| (e_value=1e-73) unknown [Picea sitchensis];; (*SWP) sp|Q84WL9|AP2S_ARATH (e_value=6e-74) AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2 SV=1;; (*TAIR) AT1G47830.1 (e_value=4e-75) | Symbols: | SNARE-like superfamily protein | chr1:17613346-17614784 REVERSE LENGTH=142;; (*ITAG) Solyc04g081410.2.1 (e_value=6e-77) genomic_reference:SL2.40ch04 gene_region:62993458-62996523 transcript_region:SL2.40ch04:62993458..62996523+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit sigma-1 (AHRD V1 ***- B5X5Q9_SALSA); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030276 NbS00011789g0013.1 protein AED:0.11 eAED:0.11 QI:238|0.77|0.9|1|1|1|10|341|541; (*GB) gi|302142657|emb|CBI19860.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G75730.2 (e_value=5e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. | chr1:28435991-28438983 REVERSE LENGTH=589;; (*ITAG) Solyc04g081420.2.1 (e_value=2e-152) genomic_reference:SL2.40ch04 gene_region:62997146-63001994 transcript_region:SL2.40ch04:62997146..63001994- functional_description:"Unknown Protein (AHRD V1)"; NbS00004303g0008.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|1|1|2|123|311; (*GB) gi|359488334|ref|XP_002283268.2| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100253163 [Vitis vinifera];; (*ITAG) Solyc02g085740.2.1 (e_value=7e-102) genomic_reference:SL2.40ch02 gene_region:43115437-43121950 transcript_region:SL2.40ch02:43115437..43121950+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004303g0003.1 protein AED:0.51 eAED:0.53 QI:0|0|0.14|0.85|1|1|7|7|220; (*GB) gi|298204375|emb|CBI16855.3| (e_value=6e-32) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g085740.2.1 (e_value=2e-67) genomic_reference:SL2.40ch02 gene_region:43115437-43121950 transcript_region:SL2.40ch02:43115437..43121950+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004303g0009.1 protein AED:0.55 eAED:0.55 QI:110|0|0.5|0.5|0|0|2|178|83 NbS00014329g0004.1 protein AED:0.06 eAED:0.06 QI:292|1|1|1|1|1|5|352|386; (*GB) gi|225439489|ref|XP_002268055.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=2e-27) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=2e-46) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc06g051060.2.1 (e_value=2e-111) genomic_reference:SL2.40ch06 gene_region:30657220-30658891 transcript_region:SL2.40ch06:30657220..30658891+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6ER41_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00007773g0005.1 protein AED:0.29 eAED:0.30 QI:1442|0.92|0.8|1|0.78|0.73|15|0|256; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=1e-119) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=9e-55) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=8e-92) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc06g083830.2.1 (e_value=3e-151) genomic_reference:SL2.40ch06 gene_region:45418434-45430398 transcript_region:SL2.40ch06:45418434..45430398- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00007773g0008.1 protein AED:0.46 eAED:0.46 QI:0|0.66|0.75|0.75|1|1|4|0|153; (*GB) gi|76161008|gb|ABA40467.1| (e_value=9e-63) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=1e-56) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1;; (*TAIR) AT2G20450.1 (e_value=9e-58) | Symbols: | Ribosomal protein L14 | chr2:8813923-8815071 FORWARD LENGTH=134;; (*ITAG) Solyc06g008260.2.1 (e_value=4e-66) genomic_reference:SL2.40ch06 gene_region:2134911-2138172 transcript_region:SL2.40ch06:2134911..2138172+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00006261g0014.1 protein AED:0.11 eAED:0.17 QI:518|0.61|0.5|1|0.92|0.85|14|0|1078; (*GB) gi|255556229|ref|XP_002519149.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G15900.1 (e_value=0.0) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr2:6927390-6932535 FORWARD LENGTH=994;; (*ITAG) Solyc01g108920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87808978-87822932 transcript_region:SL2.40ch01:87808978..87822932+ go_terms:GO:0007154 functional_description:"Serine/threonine-protein kinase Sgk3 (AHRD V1 *--- SGK3_RAT); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00006261g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0|1|0|0|4|0|178; (*GB) gi|147855061|emb|CAN82372.1| (e_value=5e-14) hypothetical protein VITISV_027623 [Vitis vinifera];; (*SWP) sp|Q8S2E6|Y1235_ORYSJ (e_value=2e-13) B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica GN=Os01g0723500 PE=2 SV=1;; (*ITAG) Solyc01g108930.2.1 (e_value=4e-22) genomic_reference:SL2.40ch01 gene_region:87823680-87825210 transcript_region:SL2.40ch01:87823680..87825210+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0622200 (AHRD V1 ***- Y3222_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00006261g0016.1 protein AED:0.33 eAED:0.33 QI:13|0.5|0.33|1|0|0|3|0|120; (*GB) gi|225428637|ref|XP_002284808.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100255593 [Vitis vinifera];; (*TAIR) AT2G26500.1 (e_value=2e-17) | Symbols: | cytochrome b6f complex subunit (petM), putative | chr2:11270370-11270747 FORWARD LENGTH=125;; (*ITAG) Solyc01g109040.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:87870125-87870994 transcript_region:SL2.40ch01:87870125..87870994+ go_terms:GO:0009496 functional_description:"Plastoquinol-plastocyanin reductase (AHRD V1 **-* B6SRD7_MAIZE); contains Interpro domain(s) IPR012595 PetM of cytochrome b6/f complex subunit 7 "; GO:0009496 NbS00006261g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|435; (*GB) gi|359480611|ref|XP_003632499.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera];; (*TAIR) AT5G67540.1 (e_value=0.0) | Symbols: | Arabinanase/levansucrase/invertase | chr5:26944253-26946058 REVERSE LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00006261g0005.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|255556189|ref|XP_002519129.1| (e_value=5e-107) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9ZQF1|PP152_ARATH (e_value=6e-85) Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1;; (*TAIR) AT2G15630.1 (e_value=4e-86) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:6814521-6816404 FORWARD LENGTH=627;; (*ITAG) Solyc01g109060.2.1 (e_value=4e-133) genomic_reference:SL2.40ch01 gene_region:87873769-87876049 transcript_region:SL2.40ch01:87873769..87876049- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00006261g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|225447872|ref|XP_002269015.1| (e_value=2e-46) PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZQF1|PP152_ARATH (e_value=4e-33) Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1;; (*TAIR) AT2G15630.1 (e_value=3e-34) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:6814521-6816404 FORWARD LENGTH=627;; (*ITAG) Solyc01g109060.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:87873769-87876049 transcript_region:SL2.40ch01:87873769..87876049- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00026357g0020.1 protein AED:0.24 eAED:0.24 QI:135|1|1|1|0.66|1|4|357|515; (*GB) gi|37992755|gb|AAR06584.1| (e_value=0.0) glycinamide ribonucleotide synthetase [Nicotiana tabacum];; (*SWP) sp|P52420|PUR2_ARATH (e_value=0.0) Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2;; (*TAIR) AT1G09830.1 (e_value=0.0) | Symbols: | Glycinamide ribonucleotide (GAR) synthetase | chr1:3192783-3194936 REVERSE LENGTH=532;; (*ITAG) Solyc01g103440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83817098-83820931 transcript_region:SL2.40ch01:83817098..83820931+ go_terms:GO:0009113,GO:0005524 functional_description:"Phosphoribosylamine--glycine ligase (AHRD V1 ***- D7KJV0_ARALY); contains Interpro domain(s) IPR000115 Phosphoribosylglycinamide synthetase "; GO:0009113,GO:0005524 NbS00026357g0006.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|417; (*GB) gi|359475158|ref|XP_002281140.2| (e_value=1e-120) PREDICTED: RING-H2 finger protein ATL65-like [Vitis vinifera];; (*SWP) sp|Q67YI6|ATL65_ARATH (e_value=1e-67) RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2;; (*TAIR) AT3G18930.2 (e_value=1e-68) | Symbols: | RING/U-box superfamily protein | chr3:6524110-6525345 REVERSE LENGTH=411;; (*ITAG) Solyc01g109200.2.1 (e_value=3e-165) genomic_reference:SL2.40ch01 gene_region:87987513-87989088 transcript_region:SL2.40ch01:87987513..87989088- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00026357g0019.1 protein AED:0.32 eAED:0.35 QI:328|0.66|0.57|0.85|1|1|7|0|217; (*GB) gi|224103487|ref|XP_002313075.1| (e_value=6e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XIA9|LACS2_ARATH (e_value=2e-66) Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1;; (*TAIR) AT1G49430.1 (e_value=2e-67) | Symbols: LACS2, LRD2 | long-chain acyl-CoA synthetase 2 | chr1:18291188-18295641 FORWARD LENGTH=665;; (*ITAG) Solyc01g109180.2.1 (e_value=1e-109) genomic_reference:SL2.40ch01 gene_region:87977713-87983350 transcript_region:SL2.40ch01:87977713..87983350- go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 ***- B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00026357g0022.1 protein AED:0.17 eAED:0.17 QI:128|0.5|1|1|0.5|0.33|3|296|165; (*GB) gi|225428596|ref|XP_002284722.1| (e_value=4e-61) PREDICTED: uncharacterized protein LOC100248690 [Vitis vinifera];; (*TAIR) AT3G50830.1 (e_value=5e-53) | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated 413-plasma membrane 2 | chr3:18894109-18895355 REVERSE LENGTH=203;; (*ITAG) Solyc01g109170.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:87976877-87978822 transcript_region:SL2.40ch01:87976877..87978822+ functional_description:"Cold acclimation protein COR413-like (AHRD V1 ***- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 "; NbS00026357g0017.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|0|0|2|172|74 NbS00026357g0004.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|1|1|2|0|91; (*GB) gi|225428588|ref|XP_002284707.1| (e_value=4e-17) PREDICTED: CASP-like protein At1g49405 [Vitis vinifera];; (*ITAG) Solyc02g090000.2.1 (e_value=5e-13) genomic_reference:SL2.40ch02 gene_region:46263082-46266622 transcript_region:SL2.40ch02:46263082..46266622- functional_description:"UPF0497 membrane protein At3g50810 (AHRD V1 ***- U497K_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00039131g0005.1 protein AED:0.41 eAED:0.41 QI:0|0.62|0.66|1|1|0.88|9|319|445; (*GB) gi|225431711|ref|XP_002267516.1| (e_value=0.0) PREDICTED: histone deacetylase 14 [Vitis vinifera];; (*SWP) sp|Q941D6|HDA14_ARATH (e_value=0.0) Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1;; (*TAIR) AT4G33470.1 (e_value=0.0) | Symbols: hda14, ATHDA14 | histone deacetylase 14 | chr4:16102774-16105439 REVERSE LENGTH=423;; (*ITAG) Solyc01g009110.2.1 (e_value=3e-178) genomic_reference:SL2.40ch01 gene_region:3123209-3125706 transcript_region:SL2.40ch01:3123209..3125706- go_terms:GO:0005634 functional_description:"Histone deacetylase family protein expressed (AHRD V1 ***- Q2QWU2_ORYSJ); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0005634 NbS00005208g0010.1 protein AED:0.07 eAED:0.07 QI:431|0.8|0.66|1|0.8|0.66|6|277|468; (*GB) gi|350536217|ref|NP_001233979.1| (e_value=0.0) amino acid transporter [Solanum lycopersicum];; (*SWP) sp|Q38967|AAP2_ARATH (e_value=0.0) Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1;; (*TAIR) AT5G09220.1 (e_value=0.0) | Symbols: AAP2 | amino acid permease 2 | chr5:2866867-2868863 FORWARD LENGTH=493;; (*ITAG) Solyc11g005070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:61813-63629 transcript_region:SL2.40ch11:61813..63629- functional_description:"Amino acid permease (AHRD V1 ***- B9GU10_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00031113g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.77|0.7|1|0.55|0.4|10|38|1536; (*GB) gi|297742390|emb|CBI34539.3| (e_value=5e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=1e-141) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=8e-143) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g082750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00041716g0004.1 protein AED:0.19 eAED:0.20 QI:159|0.94|0.94|1|0.82|0.83|18|493|730; (*GB) gi|350538549|ref|NP_001234604.1| (e_value=0.0) beta-amyrin synthase [Solanum lycopersicum];; (*SWP) sp|E7DN63|BAMS_SOLLC (e_value=0.0) Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1;; (*TAIR) AT1G78950.1 (e_value=0.0) | Symbols: | Terpenoid cyclases family protein | chr1:29684558-29688673 REVERSE LENGTH=759;; (*ITAG) Solyc12g006530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1041051-1049001 transcript_region:SL2.40ch12:1041051..1049001+ go_terms:GO:0016866,GO:0003824 functional_description:"Cycloartenol synthase (AHRD V1 ***- D7LA92_ARALY); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0016866,GO:0003824 NbS00055144g0003.1 protein AED:0.25 eAED:0.26 QI:0|0.5|0.2|0.6|1|1|5|0|276; (*GB) gi|225436508|ref|XP_002276537.1| (e_value=2e-45) PREDICTED: uncharacterized protein LOC100261829 [Vitis vinifera];; (*TAIR) AT5G60800.1 (e_value=2e-39) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc06g074930.1.1 (e_value=2e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42830852-42832129 transcript_region:SL2.40ch06:42830852..42832129+ go_terms:GO:0005507 functional_description:"Metal ion binding protein (AHRD V1 **** B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00055144g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|224129360|ref|XP_002328698.1| (e_value=6e-14) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7G4|TCP22_ARATH (e_value=7e-15) Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1;; (*TAIR) AT1G72010.1 (e_value=5e-16) | Symbols: | TCP family transcription factor | chr1:27107844-27108971 FORWARD LENGTH=375;; (*ITAG) Solyc01g103780.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:84064508-84066135 transcript_region:SL2.40ch01:84064508..84066135- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00055144g0010.1 protein AED:0.29 eAED:0.29 QI:224|1|0.83|1|0.8|0.83|6|0|363; (*GB) gi|356543500|ref|XP_003540198.1| (e_value=0.0) PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=4e-174) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=3e-175) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc06g074940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42833203-42837088 transcript_region:SL2.40ch06:42833203..42837088+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- Q5A2T2_CANAL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00055144g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|224118402|ref|XP_002331473.1| (e_value=3e-168) ABC transporter family protein [Populus trichocarpa];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=3e-157) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=2e-158) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc06g074940.2.1 (e_value=5e-176) genomic_reference:SL2.40ch06 gene_region:42833203-42837088 transcript_region:SL2.40ch06:42833203..42837088+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- Q5A2T2_CANAL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00007640g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.5|1|1|1|4|0|735; (*GB) gi|225426296|ref|XP_002265315.1| (e_value=2e-179) PREDICTED: uncharacterized protein LOC100254675 [Vitis vinifera];; (*SWP) sp|Q8L7I1|Y4193_ARATH (e_value=6e-129) Uncharacterized protein At4g10930 OS=Arabidopsis thaliana GN=At4g10930 PE=2 SV=1;; (*TAIR) AT4G10930.1 (e_value=4e-130) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6705178-6708846 REVERSE LENGTH=984;; (*ITAG) Solyc12g055910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47252798-47265865 transcript_region:SL2.40ch12:47252798..47265865+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7LYU3_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00007640g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.14|0.57|1|1|7|0|218; (*GB) gi|225455380|ref|XP_002277839.1| (e_value=2e-62) PREDICTED: calcineurin B-like protein 04 [Vitis vinifera];; (*SWP) sp|O81223|CNBL4_ARATH (e_value=6e-61) Calcineurin B-like protein 4 OS=Arabidopsis thaliana GN=CBL4 PE=1 SV=3;; (*TAIR) AT5G24270.2 (e_value=4e-62) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc12g055920.1.1 (e_value=6e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47273184-47276237 transcript_region:SL2.40ch12:47273184..47276237+ go_terms:GO:0005509 functional_description:"Calcineurin B-like protein 04 (AHRD V1 **-- A5C1G1_VITVI); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00007640g0106.1 protein AED:0.69 eAED:0.86 QI:18|0|0|0.66|0|0|3|0|97 NbS00040420g0001.1 protein AED:0.08 eAED:0.08 QI:482|0.75|0.8|1|0.75|0.8|5|294|703; (*GB) gi|297734157|emb|CBI15404.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=2e-31) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT1G18560.1 (e_value=0.0) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690;; (*ITAG) Solyc03g119830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62445233-62448653 transcript_region:SL2.40ch03:62445233..62448653- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q10P19_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00051098g0007.1 protein AED:0.29 eAED:0.33 QI:66|0.33|0|1|0.66|0.75|4|0|300; (*GB) gi|374639357|gb|AEZ55667.1| (e_value=3e-54) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Salvia miltiorrhiza];; (*SWP) sp|Q9M4W3|ISPF_CATRO (e_value=2e-54) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1;; (*TAIR) AT1G63970.1 (e_value=2e-52) | Symbols: ISPF, MECPS | isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=231;; (*ITAG) Solyc08g081570.2.1 (e_value=2e-75) genomic_reference:SL2.40ch08 gene_region:61751474-61756267 transcript_region:SL2.40ch08:61751474..61756267- go_terms:GO:0008685,GO:0005515 functional_description:"2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase (AHRD V1 **** A9ZN13_HEVBR); contains Interpro domain(s) IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core "; GO:0008685,GO:0005515 NbS00060152g0003.1 protein AED:0.35 eAED:0.35 QI:215|1|1|1|0.66|1|4|310|123; (*GB) gi|1351357|sp|P48502.1|QCR7_SOLTU (e_value=7e-76) RecName: Full=Cytochrome b-c1 complex subunit 7; AltName: Full=CR14; AltName: Full=Complex III subunit 7; AltName: Full=Complex III subunit VII; AltName: Full=Ubiquinol-cytochrome c reductase complex 14 kDa protein;; (*SWP) sp|P48502|QCR7_SOLTU (e_value=2e-77) Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G25450.1 (e_value=1e-67) | Symbols: | Cytochrome bd ubiquinol oxidase, 14kDa subunit | chr5:8857036-8857849 FORWARD LENGTH=122;; (*ITAG) Solyc08g067020.2.1 (e_value=2e-79) genomic_reference:SL2.40ch08 gene_region:53114215-53119237 transcript_region:SL2.40ch08:53114215..53119237+ go_terms:GO:0006122 functional_description:"Ubiquinol-cytochrome c reductase complex protein (AHRD V1 ***- B6UBZ9_MAIZE); contains Interpro domain(s) IPR003197 Cytochrome bd ubiquinol oxidase, 14 kDa subunit "; GO:0006122 NbS00052460g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.81|1|0.6|0.54|11|557|478; (*GB) gi|255568621|ref|XP_002525284.1| (e_value=5e-152) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G67610.1 (e_value=9e-134) | Symbols: | Uncharacterized conserved protein (DUF2215) | chr5:26961224-26963614 REVERSE LENGTH=486;; (*ITAG) Solyc02g064580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30264429-30273186 transcript_region:SL2.40ch02:30264429..30273186+ functional_description:"Rhodopsin-like receptor (AHRD V1 ***- B6TUA3_MAIZE); contains Interpro domain(s) IPR019358 Protein of unknown function DUF2215 "; NbS00006519g0008.1 protein AED:0.07 eAED:0.08 QI:67|1|0.83|1|0.2|0.16|6|0|311; (*GB) gi|359473190|ref|XP_003631261.1| (e_value=6e-102) PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2-like [Vitis vinifera];; (*SWP) sp|Q9ZUD9|SRO2_ARATH (e_value=9e-67) Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1;; (*TAIR) AT1G23550.1 (e_value=7e-68) | Symbols: SRO2 | similar to RCD one 2 | chr1:8350912-8352232 FORWARD LENGTH=323;; (*ITAG) Solyc05g005280.2.1 (e_value=5e-144) genomic_reference:SL2.40ch05 gene_region:227383-230131 transcript_region:SL2.40ch05:227383..230131- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00015994g0001.1 protein AED:0.28 eAED:0.32 QI:90|0.75|0.88|1|0.87|0.77|9|329|437; (*GB) gi|24745880|dbj|BAC23035.1| (e_value=0.0) 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum];; (*SWP) sp|Q9MAK9|PS10B_ARATH (e_value=0.0) 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1;; (*TAIR) AT1G45000.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399;; (*ITAG) Solyc01g109940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00015994g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.75|1|0.66|0.75|4|295|344; (*GB) gi|225428394|ref|XP_002283631.1| (e_value=2e-75) PREDICTED: uncharacterized protein LOC100250419 [Vitis vinifera];; (*TAIR) AT4G39140.5 (e_value=8e-52) | Symbols: | RING/U-box superfamily protein | chr4:18229637-18231282 REVERSE LENGTH=429;; (*ITAG) Solyc10g054030.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49992844-49998485 transcript_region:SL2.40ch10:49992844..49998485+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021149g0014.1 protein AED:0.43 eAED:0.46 QI:0|0|0|0.66|0.5|0.33|3|0|203; (*ITAG) Solyc02g078660.2.1 (e_value=2e-56) genomic_reference:SL2.40ch02 gene_region:37901791-37906221 transcript_region:SL2.40ch02:37901791..37906221- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00021149g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0.5|2|0|210; (*GB) gi|359496641|ref|XP_002271939.2| (e_value=1e-79) PREDICTED: TMV resistance protein N [Vitis vinifera];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=2e-12) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT1G61105.1 (e_value=5e-71) | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188;; (*ITAG) Solyc02g078680.1.1 (e_value=3e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37924783-37926195 transcript_region:SL2.40ch02:37924783..37926195+ go_terms:GO:0031224 functional_description:"Tir, resistance protein fragment"; GO:0031224 NbS00021149g0013.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|289; (*ITAG) Solyc02g078660.2.1 (e_value=2e-55) genomic_reference:SL2.40ch02 gene_region:37901791-37906221 transcript_region:SL2.40ch02:37901791..37906221- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00021149g0015.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|3|0|109; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=1e-35) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=9e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc02g078660.2.1 (e_value=8e-62) genomic_reference:SL2.40ch02 gene_region:37901791-37906221 transcript_region:SL2.40ch02:37901791..37906221- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00021149g0012.1 protein AED:0.47 eAED:0.76 QI:0|0|0|1|0|0|2|0|65 NbS00015944g0012.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|502|146; (*GB) gi|224138804|ref|XP_002326694.1| (e_value=5e-20) predicted protein [Populus trichocarpa]; NbS00015944g0011.1 protein AED:0.02 eAED:0.02 QI:178|1|1|1|0|0|2|552|130; (*GB) gi|224138804|ref|XP_002326694.1| (e_value=5e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47060.1 (e_value=5e-21) | Symbols: | Protein of unknown function (DUF581) | chr5:19116843-19117639 FORWARD LENGTH=177;; (*ITAG) Solyc08g077480.2.1 (e_value=3e-24) genomic_reference:SL2.40ch08 gene_region:58599749-58601339 transcript_region:SL2.40ch08:58599749..58601339+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00015944g0016.1 protein AED:0.23 eAED:0.29 QI:0|0.83|0.85|1|1|0.85|7|258|177; (*GB) gi|356460909|ref|NP_001239047.1| (e_value=6e-105) calcineurin B-like 1 [Solanum lycopersicum];; (*SWP) sp|O81445|CNBL1_ARATH (e_value=2e-100) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.1 (e_value=1e-101) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g077770.2.1 (e_value=1e-107) genomic_reference:SL2.40ch08 gene_region:58838680-58845331 transcript_region:SL2.40ch08:58838680..58845331- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00015944g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|225457136|ref|XP_002280359.1| (e_value=7e-40) PREDICTED: peroxidase 65 [Vitis vinifera];; (*SWP) sp|O23609|PER41_ARATH (e_value=7e-37) Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1;; (*TAIR) AT4G17690.1 (e_value=6e-38) | Symbols: | Peroxidase superfamily protein | chr4:9846127-9847107 FORWARD LENGTH=326;; (*ITAG) Solyc08g007150.1.1 (e_value=6e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1708656-1709615 transcript_region:SL2.40ch08:1708656..1709615- go_terms:GO:0004601 functional_description:"Peroxidase 65 (AHRD V1 **** C7E9R8_BRACM); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00015944g0111.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.71|1|0.66|0.71|7|0|281 NbS00015944g0103.1 protein AED:0.12 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|307 NbS00015944g0112.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0.66|0.75|4|0|675 NbS00015944g0113.1 protein AED:0.25 eAED:0.25 QI:139|1|0.87|1|1|1|8|0|539 NbS00044649g0001.1 protein AED:0.09 eAED:0.09 QI:115|0.4|0.66|0.83|1|1|6|686|227; (*GB) gi|225442335|ref|XP_002280910.1| (e_value=8e-85) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=2e-80) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.1 (e_value=1e-81) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501;; (*ITAG) Solyc12g044800.1.1 (e_value=1e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45580005-45590307 transcript_region:SL2.40ch12:45580005..45590307- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00017162g0025.1 protein AED:0.21 eAED:0.26 QI:73|0.42|0.25|1|0.28|0.5|8|0|518; (*GB) gi|224086328|ref|XP_002307850.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=7e-171) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT1G55850.1 (e_value=4e-159) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc07g065660.2.1 (e_value=2e-163) genomic_reference:SL2.40ch07 gene_region:64569421-64573269 transcript_region:SL2.40ch07:64569421..64573269- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT17_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00017162g0026.1 protein AED:0.36 eAED:0.36 QI:0|1|0.85|1|0.5|0.57|7|264|219; (*GB) gi|388500658|gb|AFK38395.1| (e_value=1e-100) unknown [Medicago truncatula];; (*SWP) sp|O22870|FK163_ARATH (e_value=3e-94) Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2;; (*TAIR) AT2G43560.1 (e_value=3e-95) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr2:18073995-18075385 REVERSE LENGTH=223;; (*ITAG) Solyc04g015040.2.1 (e_value=5e-122) genomic_reference:SL2.40ch04 gene_region:5242436-5247624 transcript_region:SL2.40ch04:5242436..5247624- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C1FEU4_9CHLO); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00017162g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|1|1|3|294|221; (*GB) gi|147777784|emb|CAN75733.1| (e_value=6e-86) hypothetical protein VITISV_030147 [Vitis vinifera];; (*SWP) sp|Q32L00|ALKB3_BOVIN (e_value=3e-22) Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1;; (*TAIR) AT2G22260.1 (e_value=7e-80) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr2:9461342-9463053 FORWARD LENGTH=314;; (*ITAG) Solyc04g015080.2.1 (e_value=8e-72) genomic_reference:SL2.40ch04 gene_region:5267687-5270849 transcript_region:SL2.40ch04:5267687..5270849+ go_terms:GO:0051747 functional_description:"Alkylated DNA repair protein (AHRD V1 **** A6EGN8_9SPHI)"; GO:0051747 NbS00017162g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|301802904|emb|CAI48078.2| (e_value=1e-49) leafy cotyledon 1-like protein [Helianthus annuus];; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=1e-48) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=6e-50) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc04g015060.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5258000-5260765 transcript_region:SL2.40ch04:5258000..5260765+ go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-*- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00017162g0022.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|0|0.5|2|380|184; (*GB) gi|255585404|ref|XP_002533397.1| (e_value=8e-51) ARF GTPase activator, putative [Ricinus communis];; (*TAIR) AT5G47710.2 (e_value=4e-50) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:19330470-19331178 FORWARD LENGTH=166;; (*ITAG) Solyc04g015070.2.1 (e_value=4e-69) genomic_reference:SL2.40ch04 gene_region:5263062-5264993 transcript_region:SL2.40ch04:5263062..5264993+ functional_description:"C2 domain containing protein (AHRD V1 **-- Q2A9R2_BRAOL); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00017162g0020.1 protein AED:0.29 eAED:0.31 QI:64|0.64|0.6|1|0.71|0.6|15|0|452; (*GB) gi|53854352|gb|AAU95619.1| (e_value=0.0) peroxisomal acetoacetyl-coenzyme A thiolase [Nicotiana tabacum];; (*SWP) sp|Q9FIK7|THIC2_ARATH (e_value=0.0) Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1;; (*TAIR) AT5G47720.4 (e_value=0.0) | Symbols: | Thiolase family protein | chr5:19331762-19334145 FORWARD LENGTH=415;; (*ITAG) Solyc04g015100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5276509-5281855 transcript_region:SL2.40ch04:5276509..5281855+ go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase protein (AHRD V1 **** D3YN47_9ERIC); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00017162g0024.1 protein AED:0.38 eAED:0.38 QI:93|0|0.5|0.75|0|0.25|4|0|143; (*GB) gi|224139462|ref|XP_002323124.1| (e_value=8e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50740.1 (e_value=8e-14) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637847 REVERSE LENGTH=283;; (*ITAG) Solyc04g015030.2.1 (e_value=4e-39) genomic_reference:SL2.40ch04 gene_region:5235855-5241900 transcript_region:SL2.40ch04:5235855..5241900+ go_terms:GO:0046914 functional_description:"Metal ion binding protein (AHRD V1 *--* B6SZL4_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0046914 NbS00017162g0030.1 protein AED:0.38 eAED:0.55 QI:0|0.55|0.5|0.9|0.55|0.7|10|266|287; (*GB) gi|4959712|gb|AAD34459.1|AF136010_1 (e_value=4e-62) SPP30 [Solanum chacoense];; (*SWP) sp|Q54YG5|TPPC5_DICDI (e_value=2e-36) Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1;; (*TAIR) AT5G58030.1 (e_value=1e-62) | Symbols: | Transport protein particle (TRAPP) component | chr5:23487021-23488483 REVERSE LENGTH=195;; (*ITAG) Solyc04g015050.2.1 (e_value=4e-65) genomic_reference:SL2.40ch04 gene_region:5249508-5255638 transcript_region:SL2.40ch04:5249508..5255638+ functional_description:"Trafficking protein particle complex subunit 5 (AHRD V1 ***- C1BHU1_ONCMY); contains Interpro domain(s) IPR016696 TRAPP I complex, Trs31 "; NbS00022287g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|0.5|1|1|4|294|354; (*GB) gi|359495764|ref|XP_003635084.1| (e_value=9e-66) PREDICTED: INO80 complex subunit D-like [Vitis vinifera];; (*TAIR) AT2G31600.1 (e_value=1e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13448541-13450083 REVERSE LENGTH=301;; (*ITAG) Solyc01g008190.2.1 (e_value=7e-87) genomic_reference:SL2.40ch01 gene_region:2342704-2344463 transcript_region:SL2.40ch01:2342704..2344463+ functional_description:"Os05g0304100 protein (Fragment) (AHRD V1 *-*- Q0DJB8_ORYSJ)"; NbS00026055g0002.1 protein AED:0.04 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|373; (*GB) gi|1864017|dbj|BAA09709.1| (e_value=0.0) elongation factor-1 alpha [Nicotiana tabacum];; (*SWP) sp|P43643|EF1A_TOBAC (e_value=0.0) Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00026055g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|269; (*GB) gi|224092534|ref|XP_002309650.1| (e_value=1e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q501E6|FLOT1_ARATH (e_value=1e-101) Flotillin-like protein 1 OS=Arabidopsis thaliana GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=8e-103) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc03g005420.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:296785-298965 transcript_region:SL2.40ch03:296785..298965+ functional_description:"Flotillin domain protein (AHRD V1 ***- Q4X200_ASPFU); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00045437g0007.1 protein AED:0.29 eAED:0.44 QI:0|0|0|1|0|0|5|0|318; (*GB) gi|84688908|gb|ABC61503.1| (e_value=4e-23) AGO1-2, partial [Nicotiana benthamiana];; (*SWP) sp|Q7XSA2|AGO1B_ORYSJ (e_value=1e-17) Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3;; (*TAIR) AT1G48410.3 (e_value=2e-15) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1050;; (*ITAG) Solyc06g072300.2.1 (e_value=3e-24) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00015787g0004.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|1|6|0|451; (*GB) gi|62183960|gb|AAX73301.1| (e_value=0.0) putative ribosomal-protein S6 kinase-like protein [Solanum lycopersicum];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=2e-178) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=1e-179) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc06g071210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40195864-40199946 transcript_region:SL2.40ch06:40195864..40199946+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase 2 alpha (AHRD V1 **** KS6AA_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00000679g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0.5|1|1|1|2|218|211; (*ITAG) Solyc02g043820.1.1 (e_value=8e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000679g0010.1 protein AED:0.10 eAED:0.10 QI:323|1|1|1|0.4|0.5|6|210|139; (*GB) gi|94983069|gb|ABF50239.1| (e_value=8e-71) SEPALLATA, partial [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P29384|SEP2_ARATH (e_value=3e-24) Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1;; (*TAIR) AT3G02310.1 (e_value=2e-25) | Symbols: SEP2, AGL4 | K-box region and MADS-box transcription factor family protein | chr3:464554-466687 REVERSE LENGTH=250;; (*ITAG) Solyc02g089200.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:45652869-45657506 transcript_region:SL2.40ch02:45652869..45657506+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00000679g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|94983075|gb|ABF50242.1| (e_value=4e-37) putative transcription factor SEPALATTA [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P29382|SEP1_ARATH (e_value=3e-34) Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2;; (*TAIR) AT5G15800.1 (e_value=2e-35) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251;; (*ITAG) Solyc12g038510.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35889365-35901176 transcript_region:SL2.40ch12:35889365..35901176- go_terms:GO:0005634 functional_description:"MADS box transcription factor 11 (AHRD V1 ***- D9IFM5_ONCHC); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00000679g0114.1 protein AED:0.11 eAED:0.11 QI:123|0.85|0.75|0.87|0.71|0.62|8|0|437 NbS00000679g0106.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.25|1|1|4|0|64 NbS00000679g0117.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|1|0.75|0.6|5|0|346 NbS00000679g0115.1 protein AED:0.21 eAED:0.37 QI:0|0.12|0|0.66|0.12|0.33|9|0|481 NbS00000679g0116.1 protein AED:0.59 eAED:0.73 QI:48|0|0|0.5|0|0|2|0|51 NbS00007349g0001.1 protein AED:0.22 eAED:0.22 QI:357|0.5|0.8|1|0.5|0.8|5|158|174; (*GB) gi|129563703|gb|ABO31100.1| (e_value=1e-25) ovule receptor-like kinase 28 [Solanum chacoense];; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=6e-23) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.2 (e_value=4e-24) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=720;; (*ITAG) Solyc12g055720.1.1 (e_value=6e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47042875-47052360 transcript_region:SL2.40ch12:47042875..47052360- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00007349g0122.1 protein AED:0.03 eAED:0.03 QI:107|0.83|0.71|1|0.66|0.42|7|373|614 NbS00007349g0123.1 protein AED:0.10 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|133 NbS00007349g0126.1 protein AED:0.01 eAED:0.01 QI:174|1|1|1|1|1|6|405|207 NbS00007349g0104.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|362 NbS00007349g0124.1 protein AED:0.03 eAED:0.14 QI:0|0|0.33|1|0|0.33|3|0|321 NbS00007349g0107.1 protein AED:0.17 eAED:0.17 QI:265|0.83|0.85|1|1|1|7|548|319 NbS00009617g0004.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.25|1|1|8|0|167 NbS00009617g0007.1 protein AED:0.23 eAED:0.24 QI:360|0.76|0.85|1|0.76|0.71|14|0|403; (*GB) gi|224083179|ref|XP_002306959.1| (e_value=2e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|P70187|HIAT1_MOUSE (e_value=3e-14) Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3;; (*TAIR) AT2G16980.2 (e_value=3e-114) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461;; (*ITAG) Solyc12g094400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62962250-62970152 transcript_region:SL2.40ch12:62962250..62970152+ go_terms:GO:0055085,GO:0016021 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- A6WZJ4_OCHA4); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085,GO:0016021 NbS00009617g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|269; (*GB) gi|255539066|ref|XP_002510598.1| (e_value=2e-45) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SGS5|Y1607_ARATH (e_value=4e-26) Uncharacterized protein At1g76070 OS=Arabidopsis thaliana GN=At1g76070 PE=1 SV=1;; (*TAIR) AT1G76070.1 (e_value=3e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28546617-28547435 FORWARD LENGTH=272;; (*ITAG) Solyc12g094390.1.1 (e_value=6e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:62957470-62958198 transcript_region:SL2.40ch12:62957470..62958198+ functional_description:"Syringolide-induced protein 14-1-1 (Fragment) (AHRD V1 *-*- Q06H38_ARAHY)"; NbS00044791g0010.1 protein AED:0.00 eAED:0.00 QI:316|1|1|1|0.5|0.4|5|118|123; (*GB) gi|298204759|emb|CBI25257.3| (e_value=7e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L831|NUDT3_ARATH (e_value=3e-53) Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1;; (*TAIR) AT1G79690.1 (e_value=2e-54) | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog 3 | chr1:29985360-29990171 FORWARD LENGTH=772;; (*ITAG) Solyc08g075390.2.1 (e_value=7e-70) genomic_reference:SL2.40ch08 gene_region:56687214-56708030 transcript_region:SL2.40ch08:56687214..56708030- go_terms:GO:0005515 functional_description:"Isopentenyl-diphosphate delta-isomerase family protein (AHRD V1 *--- B1KWZ7_CLOBM); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0005515 NbS00044791g0007.1 protein AED:0.21 eAED:0.21 QI:240|1|1|1|0|1|2|360|121; (*GB) gi|33667910|gb|AAQ24534.1| (e_value=3e-46) SWIb domain-containing protein [Solanum chacoense];; (*SWP) sp|Q05024|TRI1_YEAST (e_value=9e-17) Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1;; (*TAIR) AT3G03590.1 (e_value=3e-38) | Symbols: | SWIB/MDM2 domain superfamily protein | chr3:865341-866669 REVERSE LENGTH=143;; (*ITAG) Solyc08g075400.2.1 (e_value=4e-57) genomic_reference:SL2.40ch08 gene_region:56708842-56711429 transcript_region:SL2.40ch08:56708842..56711429- functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- B0UB94_METS4); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00022544g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|718; (*GB) gi|255568217|ref|XP_002525084.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|O80946|AB1G_ARATH (e_value=0.0) ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1;; (*TAIR) AT2G39350.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:16430174-16432396 REVERSE LENGTH=740;; (*ITAG) Solyc05g054890.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63838739-63841441 transcript_region:SL2.40ch05:63838739..63841441+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 1 (AHRD V1 **** AB1G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00031544g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=6e-26) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=2e-21) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.2 (e_value=2e-18) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc02g087910.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44745206-44745565 transcript_region:SL2.40ch02:44745206..44745565+ go_terms:GO:0005516 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9SMA5_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516 NbS00031544g0009.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|733; (*GB) gi|225452781|ref|XP_002283300.1| (e_value=0.0) PREDICTED: cullin-3B [Vitis vinifera];; (*SWP) sp|Q9ZVH4|CUL3A_ARATH (e_value=0.0) Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1;; (*TAIR) AT1G26830.1 (e_value=0.0) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732;; (*ITAG) Solyc02g087900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44740242-44744447 transcript_region:SL2.40ch02:44740242..44744447+ go_terms:GO:0030332 functional_description:"Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00031544g0010.1 protein AED:0.10 eAED:0.10 QI:4|1|1|1|1|1|4|217|450; (*GB) gi|386870485|gb|AFJ42573.1| (e_value=0.0) alpha-tubulin [Sesamum indicum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc02g087880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44730447-44732299 transcript_region:SL2.40ch02:44730447..44732299+ go_terms:GO:0046982 functional_description:"Tubulin alpha-7 chain (AHRD V1 ***- B9IJV8_POPTR); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982 NbS00031544g0013.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|0|0|2|0|125; (*ITAG) Solyc02g087890.2.1 (e_value=8e-37) genomic_reference:SL2.40ch02 gene_region:44732392-44733265 transcript_region:SL2.40ch02:44732392..44733265- functional_description:"Unknown Protein (AHRD V1)"; NbS00052225g0008.1 protein AED:0.17 eAED:0.29 QI:0|0.4|0.16|1|0.2|0.33|6|0|320; (*GB) gi|224128956|ref|XP_002320463.1| (e_value=3e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLM3|ZDH23_ARATH (e_value=6e-41) Probable S-acyltransferase At5g41060 OS=Arabidopsis thaliana GN=At5g41060 PE=2 SV=1;; (*TAIR) AT5G41060.2 (e_value=2e-42) | Symbols: | DHHC-type zinc finger family protein | chr5:16435949-16437540 FORWARD LENGTH=395;; (*ITAG) Solyc07g052330.1.1 (e_value=2e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58159705-58161724 transcript_region:SL2.40ch07:58159705..58161724- go_terms:GO:0016409 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-** PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00052225g0001.1 protein AED:0.23 eAED:0.24 QI:119|0.61|0.57|0.92|1|1|14|0|984; (*GB) gi|255566405|ref|XP_002524188.1| (e_value=0.0) 3'-5' exonuclease, putative [Ricinus communis];; (*SWP) sp|Q10146|RRP6_SCHPO (e_value=5e-48) Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=2 SV=2;; (*TAIR) AT2G32415.2 (e_value=0.0) | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr2:13761386-13765421 REVERSE LENGTH=872;; (*ITAG) Solyc07g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58163899-58175032 transcript_region:SL2.40ch07:58163899..58175032+ go_terms:GO:0003676,GO:0005622 functional_description:"Exosome complex exonuclease RRP6-like protein (AHRD V1 *--- D0MWN1_PHYIN); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00002776g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.75|1|1|0|0.4|5|216|330; (*GB) gi|225468498|ref|XP_002270407.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera];; (*SWP) sp|Q8LAM0|UBP4_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2;; (*TAIR) AT2G22310.1 (e_value=0.0) | Symbols: ATUBP4, UBP4 | ubiquitin-specific protease 4 | chr2:9476733-9478825 REVERSE LENGTH=365;; (*ITAG) Solyc04g056290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53126386-53139288 transcript_region:SL2.40ch04:53126386..53139288- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9HFG1_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00002776g0010.1 protein AED:0.78 eAED:0.87 QI:0|0.16|0.14|0.42|0.66|1|7|0|292; (*GB) gi|350537283|ref|NP_001234799.1| (e_value=3e-105) cyclin dependent kinase C [Solanum lycopersicum];; (*SWP) sp|Q5JK68|CDKC2_ORYSJ (e_value=4e-95) Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1;; (*TAIR) AT5G10270.1 (e_value=1e-94) | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505;; (*ITAG) Solyc04g056280.2.1 (e_value=5e-108) genomic_reference:SL2.40ch04 gene_region:53113443-53125978 transcript_region:SL2.40ch04:53113443..53125978+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00015922g0013.1 protein AED:0.31 eAED:0.36 QI:0|0.87|0.77|1|0.62|0.66|9|0|275; (*GB) gi|166203411|gb|ABY84674.1| (e_value=0.0) fertilization-independent endosperm protein [Nicotiana tabacum];; (*SWP) sp|Q9LT47|FIE_ARATH (e_value=4e-150) Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2;; (*TAIR) AT3G20740.1 (e_value=3e-151) | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like superfamily protein | chr3:7249064-7252254 REVERSE LENGTH=369;; (*ITAG) Solyc07g064090.2.1 (e_value=1e-180) genomic_reference:SL2.40ch07 gene_region:63598484-63603661 transcript_region:SL2.40ch07:63598484..63603661- go_terms:GO:0042802 functional_description:"Fertilization-independent endosperm protein (AHRD V1 **-- B0LUT0_SOLLC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00015922g0012.1 protein AED:0.21 eAED:0.22 QI:493|0.85|0.72|1|0.71|0.68|22|0|1175; (*GB) gi|359493954|ref|XP_003634700.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241773 isoform 2 [Vitis vinifera];; (*TAIR) AT3G20720.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr3:7240098-7246754 FORWARD LENGTH=1199;; (*ITAG) Solyc07g064080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63586537-63598342 transcript_region:SL2.40ch07:63586537..63598342+ functional_description:"Os06g0731950 protein (Fragment) (AHRD V1 *-*- C7J3U7_ORYSJ)"; NbS00010309g0003.1 protein AED:0.25 eAED:0.27 QI:270|0.5|0.66|1|0|0|3|0|81; (*ITAG) Solyc03g006840.2.1 (e_value=4e-15) genomic_reference:SL2.40ch03 gene_region:1353900-1356748 transcript_region:SL2.40ch03:1353900..1356748+ functional_description:"Genomic DNA chromosome 5 P1 clone MTG10 (AHRD V1 ***- Q9FIS0_ARATH)"; NbS00008493g0010.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|4|0|592; (*GB) gi|147812559|emb|CAN70631.1| (e_value=0.0) hypothetical protein VITISV_020725 [Vitis vinifera];; (*SWP) sp|Q9STS9|PP268_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1;; (*TAIR) AT3G47840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17651912-17654032 FORWARD LENGTH=706;; (*ITAG) Solyc02g068630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33168748-33170865 transcript_region:SL2.40ch02:33168748..33170865+ go_terms:GO:0005329,GO:0019534 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRG2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005329,GO:0019534 NbS00008493g0012.1 protein AED:0.37 eAED:0.40 QI:0|0.71|0.62|1|0.71|0.75|8|262|281; (*GB) gi|325087307|gb|ADY77003.1| (e_value=5e-158) pyrroline-5-carboxylate reductase [Ipomoea batatas];; (*SWP) sp|O04016|P5CR_ACTCH (e_value=3e-154) Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1;; (*TAIR) AT5G14800.1 (e_value=9e-138) | Symbols: P5CR, AT-P5R, AT-P5C1, EMB2772 | pyrroline-5- carboxylate (P5C) reductase | chr5:4786190-4787618 REVERSE LENGTH=276;; (*ITAG) Solyc02g068640.2.1 (e_value=1e-177) genomic_reference:SL2.40ch02 gene_region:33172764-33180223 transcript_region:SL2.40ch02:33172764..33180223+ go_terms:GO:0042802,GO:0004735 functional_description:"Pyrroline-5-carboxylate reductase (AHRD V1 **** D2DEW0_PHYES); contains Interpro domain(s) IPR000304 Delta 1-pyrroline-5-carboxylate reductase "; GO:0042802,GO:0004735 NbS00008493g0006.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|255577501|ref|XP_002529629.1| (e_value=1e-98) tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8GXB7|TRMB_ARATH (e_value=3e-94) tRNA (guanine-N(7)-)-methyltransferase OS=Arabidopsis thaliana GN=At5g24840 PE=2 SV=1;; (*TAIR) AT5G24840.1 (e_value=2e-95) | Symbols: | tRNA (guanine-N-7) methyltransferase | chr5:8533897-8534652 REVERSE LENGTH=251;; (*ITAG) Solyc02g068650.1.1 (e_value=7e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33182847-33183581 transcript_region:SL2.40ch02:33182847..33183581- go_terms:GO:0005515,GO:0008176 functional_description:"tRNA guanine-N7 methyltransferase (AHRD V1 **** C1BTP4_9MAXI); contains Interpro domain(s) IPR003358 tRNA (guanine-N-7) methyltransferase "; GO:0005515,GO:0008176 NbS00029374g0005.1 protein AED:0.37 eAED:0.37 QI:144|0.75|0.6|1|0.25|0.4|5|0|126; (*GB) gi|359487840|ref|XP_003633661.1| (e_value=7e-32) PREDICTED: protein MAK16 homolog B-like [Vitis vinifera];; (*TAIR) AT1G23280.1 (e_value=4e-21) | Symbols: | MAK16 protein-related | chr1:8260865-8262650 REVERSE LENGTH=303;; (*ITAG) Solyc01g005810.2.1 (e_value=7e-39) genomic_reference:SL2.40ch01 gene_region:530323-534729 transcript_region:SL2.40ch01:530323..534729+ functional_description:"Mak16 protein (AHRD V1 *-*- Q2HUC0_MEDTR); contains Interpro domain(s) IPR006958 Mak16 protein "; NbS00034270g0005.1 protein AED:0.02 eAED:0.02 QI:511|0.75|0.6|1|0.25|0.2|5|1123|303; (*GB) gi|297741106|emb|CBI31837.3| (e_value=4e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WUQ1|BAG1_ARATH (e_value=6e-74) BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT5G52060.1 (e_value=4e-75) | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342;; (*ITAG) Solyc06g035720.2.1 (e_value=2e-136) genomic_reference:SL2.40ch06 gene_region:21506013-21509381 transcript_region:SL2.40ch06:21506013..21509381- go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00004513g0014.1 protein AED:0.07 eAED:0.24 QI:0|0|0.4|1|0.25|0.4|5|177|302; (*GB) gi|296087746|emb|CBI35002.3| (e_value=7e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLR1|MYB29_ARATH (e_value=7e-21) Transcription factor MYB29 OS=Arabidopsis thaliana GN=MYB29 PE=1 SV=1;; (*TAIR) AT3G28470.1 (e_value=8e-36) | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like superfamily protein | chr3:10674579-10675724 REVERSE LENGTH=317;; (*ITAG) Solyc03g059200.1.1 (e_value=3e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:25283881-25284854 transcript_region:SL2.40ch03:25283881..25284854- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q9LSI7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00004513g0015.1 protein AED:0.21 eAED:0.23 QI:0|0.54|0.5|1|0.27|0.33|12|1287|752; (*GB) gi|83283979|gb|ABC01897.1| (e_value=3e-179) protein transport SEC13-like protein [Solanum tuberosum];; (*SWP) sp|Q9D1M0|SEC13_MOUSE (e_value=6e-82) Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3;; (*TAIR) AT2G30050.1 (e_value=1e-155) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc02g087480.2.1 (e_value=1e-179) genomic_reference:SL2.40ch02 gene_region:44493134-44496742 transcript_region:SL2.40ch02:44493134..44496742+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00000400g0005.1 protein AED:0.20 eAED:0.20 QI:123|1|1|1|1|1|10|477|511; (*GB) gi|359497044|ref|XP_002263389.2| (e_value=0.0) PREDICTED: lysosomal Pro-X carboxypeptidase [Vitis vinifera];; (*SWP) sp|Q5RBU7|PCP_PONAB (e_value=4e-147) Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1;; (*TAIR) AT5G65760.1 (e_value=0.0) | Symbols: | Serine carboxypeptidase S28 family protein | chr5:26308289-26310891 FORWARD LENGTH=515;; (*ITAG) Solyc02g091950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47741858-47747519 transcript_region:SL2.40ch02:47741858..47747519+ go_terms:GO:0008239,GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* Q9FLH1_ARATH); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0008239,GO:0004185 NbS00000400g0004.1 protein AED:0.62 eAED:0.75 QI:0|0|0.25|0.5|1|1|4|144|83 NbS00021847g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|217; (*GB) gi|147864082|emb|CAN81119.1| (e_value=1e-64) hypothetical protein VITISV_030389 [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=3e-20) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT2G43280.1 (e_value=3e-44) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr2:17989739-17990861 FORWARD LENGTH=206;; (*ITAG) Solyc09g057880.2.1 (e_value=4e-95) genomic_reference:SL2.40ch09 gene_region:47291339-47302811 transcript_region:SL2.40ch09:47291339..47302811+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 *--- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00002003g0006.1 protein AED:0.24 eAED:0.27 QI:66|0.62|0.88|1|0.37|0.55|9|370|275; (*GB) gi|224089176|ref|XP_002308652.1| (e_value=6e-104) predicted protein [Populus trichocarpa];; (*SWP) sp|O95372|LYPA2_HUMAN (e_value=4e-14) Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1;; (*TAIR) AT5G20060.3 (e_value=3e-87) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252;; (*ITAG) Solyc08g067160.2.1 (e_value=7e-124) genomic_reference:SL2.40ch08 gene_region:53325912-53329825 transcript_region:SL2.40ch08:53325912..53329825+ go_terms:GO:0008474,GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0008474,GO:0004622 NbS00002003g0002.1 protein AED:0.28 eAED:0.28 QI:87|0|0.5|0.5|1|1|2|0|82 NbS00060588g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|621; (*GB) gi|62867584|emb|CAI84657.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9M1Y3|SKI35_ARATH (e_value=0.0) F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1;; (*TAIR) AT2G44090.2 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:18238682-18240828 REVERSE LENGTH=582;; (*ITAG) Solyc08g015780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5497369-5503211 transcript_region:SL2.40ch08:5497369..5503211- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00048226g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|475; (*GB) gi|224106708|ref|XP_002314255.1| (e_value=6e-79) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0V865|FAFL_ARATH (e_value=5e-37) Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1;; (*TAIR) AT5G22090.2 (e_value=4e-38) | Symbols: | Protein of unknown function (DUF3049) | chr5:7315003-7316394 REVERSE LENGTH=463;; (*ITAG) Solyc01g009260.1.1 (e_value=4e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3288675-3290090 transcript_region:SL2.40ch01:3288675..3290090+ functional_description:"60S ribosomal protein L5, mitochondrial (AHRD V1 *-*- RM05_SOLTU)"; NbS00046401g0004.1 protein AED:0.13 eAED:0.13 QI:123|1|1|1|0.33|0.5|4|146|157; (*GB) gi|350538955|ref|NP_001234111.1| (e_value=4e-88) non-symbiotic hemoglobin 2 [Solanum lycopersicum];; (*SWP) sp|Q941P9|HBL2_SOLLC (e_value=1e-89) Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1;; (*TAIR) AT3G10520.1 (e_value=8e-80) | Symbols: AHB2, GLB2, ARATH GLB2, NSHB2, ATGLB2, HB2 | haemoglobin 2 | chr3:3276516-3277765 REVERSE LENGTH=158;; (*ITAG) Solyc03g071690.2.1 (e_value=1e-90) genomic_reference:SL2.40ch03 gene_region:41282493-41284402 transcript_region:SL2.40ch03:41282493..41284402- go_terms:GO:0005344,GO:0019825 functional_description:"Non-symbiotic hemoglobin 2 (AHRD V1 **-- D7L8Z8_ARALY); contains Interpro domain(s) IPR001032 Leghaemoglobin "; GO:0005344,GO:0019825 NbS00046401g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|224113161|ref|XP_002316411.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g071710.1.1 (e_value=1e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:41328764-41329111 transcript_region:SL2.40ch03:41328764..41329111- functional_description:"Self-pruning interacting protein 1 (AHRD V1 ***- Q9FR57_SOLLC)"; NbS00013553g0013.1 protein AED:0.21 eAED:0.27 QI:0|0.42|0.12|0.75|0.71|0.62|8|0|490; (*GB) gi|296090250|emb|CBI40069.3| (e_value=1e-159) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84P23|4CLL9_ARATH (e_value=4e-96) 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2;; (*TAIR) AT5G63380.1 (e_value=3e-97) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562;; (*ITAG) Solyc03g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60385-67905 transcript_region:SL2.40ch03:60385..67905- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 *-*- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00013553g0005.1 protein AED:0.10 eAED:0.10 QI:261|0.63|0.75|0.91|1|1|12|289|418; (*GB) gi|225452159|ref|XP_002263731.1| (e_value=0.0) PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q8W575|CSN3_ARATH (e_value=1e-172) COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2;; (*TAIR) AT5G14250.1 (e_value=8e-174) | Symbols: COP13, CSN3, FUS11 | Proteasome component (PCI) domain protein | chr5:4597970-4600561 FORWARD LENGTH=429;; (*ITAG) Solyc02g093920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49186630-49191575 transcript_region:SL2.40ch02:49186630..49191575- go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 3 (AHRD V1 ***- B6TEU1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbC26206213g0004.1 protein AED:0.05 eAED:0.09 QI:8|0|0|1|1|0.66|3|0|340; (*GB) gi|255551865|ref|XP_002516978.1| (e_value=9e-124) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT4G16070.1 (e_value=5e-88) | Symbols: | Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 | chr4:9096808-9100596 REVERSE LENGTH=654;; (*ITAG) Solyc03g122290.2.1 (e_value=6e-69) genomic_reference:SL2.40ch03 gene_region:64213482-64217360 transcript_region:SL2.40ch03:64213482..64217360+ go_terms:GO:0006629 functional_description:"Lipase family protein expressed (AHRD V1 ***- Q2QNT9_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00028523g0002.1 protein AED:0.14 eAED:0.20 QI:0|0|0|1|1|1|2|0|411; (*GB) gi|118483602|gb|ABK93697.1| (e_value=2e-128) unknown [Populus trichocarpa];; (*TAIR) AT3G08640.1 (e_value=6e-116) | Symbols: | Protein of unknown function (DUF3411) | chr3:2622992-2624005 FORWARD LENGTH=337;; (*ITAG) Solyc10g074880.1.1 (e_value=9e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57912990-57914069 transcript_region:SL2.40ch10:57912990..57914069+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q015C3_OSTTA)"; NbS00028523g0006.1 protein AED:0.35 eAED:0.36 QI:0|1|0.85|1|0.66|0.85|7|0|285; (*GB) gi|40645104|dbj|BAD06470.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9ZVI3|QKIL3_ARATH (e_value=3e-159) KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1;; (*TAIR) AT2G38610.2 (e_value=3e-160) | Symbols: | RNA-binding KH domain-containing protein | chr2:16147552-16149638 REVERSE LENGTH=286;; (*ITAG) Solyc10g074870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57902176-57910126 transcript_region:SL2.40ch10:57902176..57910126+ go_terms:GO:0003723 functional_description:"KH domain containing RNA binding signal transduction associated 1 (AHRD V1 *--- Q29RQ2_BOVIN); contains Interpro domain(s) IPR004087 K Homology "; GO:0003723 NbS00038847g0002.1 protein AED:0.11 eAED:0.11 QI:174|1|1|1|0.5|0.66|3|446|236; (*GB) gi|239056164|emb|CAQ58595.1| (e_value=4e-45) unknown protein [Vitis vinifera];; (*TAIR) AT5G16550.1 (e_value=3e-29) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405526-5406641 FORWARD LENGTH=249;; (*ITAG) Solyc11g011760.1.1 (e_value=2e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4741690-4742971 transcript_region:SL2.40ch11:4741690..4742971+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFC9_ARATH)"; NbS00059000g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|0.75|0.6|5|0|666; (*GB) gi|359490397|ref|XP_002279420.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera];; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc06g035790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21723352-21726735 transcript_region:SL2.40ch06:21723352..21726735+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00006987g0007.1 protein AED:0.18 eAED:0.36 QI:0|0|0.5|1|0|0|2|419|113 NbS00006987g0010.1 protein AED:0.07 eAED:0.12 QI:85|0|0|1|0.16|0|7|0|907; (*GB) gi|255543813|ref|XP_002512969.1| (e_value=0.0) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00006987g0009.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|95 NbS00006987g0008.1 protein AED:0.52 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|80 NbS00014902g0001.1 protein AED:0.17 eAED:0.17 QI:166|0.71|0.75|1|0.85|0.87|8|48|382; (*GB) gi|224126053|ref|XP_002319744.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-62) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G33110.1 (e_value=2e-167) | Symbols: | MATE efflux family protein | chr1:12005084-12008618 FORWARD LENGTH=494;; (*ITAG) Solyc10g080340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60942982-60946419 transcript_region:SL2.40ch10:60942982..60946419- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KIF9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00001668g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|100 NbS00032598g0001.1 protein AED:0.06 eAED:0.07 QI:0|1|0|1|0|0|2|0|93; (*ITAG) Solyc10g080790.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61322546-61324401 transcript_region:SL2.40ch10:61322546..61324401- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00037625g0008.1 protein AED:0.11 eAED:0.11 QI:1379|0.6|0.66|1|0.2|0.5|6|57|385 NbS00007827g0015.1 protein AED:0.03 eAED:0.03 QI:296|1|1|1|0.5|0.57|7|485|338; (*GB) gi|350538013|ref|NP_001234578.1| (e_value=0.0) arginase 1 [Solanum lycopersicum];; (*SWP) sp|P46637|ARGI1_ARATH (e_value=0.0) Arginase OS=Arabidopsis thaliana GN=At4g08900 PE=2 SV=1;; (*TAIR) AT4G08900.1 (e_value=0.0) | Symbols: | arginase | chr4:5703499-5705180 FORWARD LENGTH=342;; (*ITAG) Solyc01g091160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76612669-76617028 transcript_region:SL2.40ch01:76612669..76617028+ go_terms:GO:0046872 functional_description:"Agmatinase (AHRD V1 ***- Q1IPT1_ACIBL); contains Interpro domain(s) IPR006035 Ureohydrolase "; GO:0046872 NbS00007827g0019.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0|1|0.66|0.5|4|0|707; (*GB) gi|224067710|ref|XP_002302529.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02020.1 (e_value=0.0) | Symbols: | nitroreductase family protein | chr1:352842-354845 REVERSE LENGTH=642;; (*ITAG) Solyc01g091130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76596420-76600448 transcript_region:SL2.40ch01:76596420..76600448- go_terms:GO:0016657 functional_description:"Nitroreductase (AHRD V1 ***- Q2WAQ2_MAGSA); contains Interpro domain(s) IPR000415 Nitroreductase-like "; GO:0016657 NbS00007827g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|1|1|5|0|565; (*GB) gi|357469763|ref|XP_003605166.1| (e_value=0.0) Peptide transporter [Medicago truncatula];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc01g091180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76626787-76631774 transcript_region:SL2.40ch01:76626787..76631774- go_terms:GO:0042936,GO:0015112 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936,GO:0015112 NbS00020499g0001.1 protein AED:0.18 eAED:0.20 QI:0|1|0.33|1|1|1|3|0|344; (*GB) gi|255551995|ref|XP_002517042.1| (e_value=2e-117) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G22970.1 (e_value=5e-85) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc09g082980.2.1 (e_value=8e-159) genomic_reference:SL2.40ch09 gene_region:64071758-64073514 transcript_region:SL2.40ch09:64071758..64073514+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6TMA8_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00020499g0007.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|72 NbS00020499g0008.1 protein AED:0.44 eAED:0.52 QI:0|0|0|1|0|0|4|0|222; (*GB) gi|57014002|ref|YP_173473.1| (e_value=1e-18) hypothetical protein NitaMp136 [Nicotiana tabacum]; NbS00003759g0010.1 protein AED:0.13 eAED:0.13 QI:135|1|0.5|1|1|1|2|0|650; (*GB) gi|224110252|ref|XP_002315461.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0.0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2;; (*TAIR) AT4G16120.1 (e_value=0.0) | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661;; (*ITAG) Solyc01g065530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64199720-64202838 transcript_region:SL2.40ch01:64199720..64202838+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00003759g0013.1 protein AED:0.97 eAED:1.00 QI:0|0|0|0.25|0|0.25|4|0|96 NbS00003759g0011.1 protein AED:0.23 eAED:0.23 QI:96|0.8|0.83|0.83|0.8|0.83|6|0|655; (*GB) gi|343407542|gb|AEM23772.1| (e_value=0.0) RRB2 type-b response regulator [Nicotiana tabacum];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=1e-162) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=8e-164) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc01g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64203477-64207656 transcript_region:SL2.40ch01:64203477..64207656- go_terms:GO:0005515,GO:0003700 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0005515,GO:0003700 NbS00036444g0005.1 protein AED:0.12 eAED:0.22 QI:0|0.25|0.2|1|0|0|5|0|323; (*GB) gi|255582749|ref|XP_002532151.1| (e_value=4e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G73850.1 (e_value=3e-17) | Symbols: | Protein of unknown function (DUF1666) | chr1:27767375-27770386 FORWARD LENGTH=635;; (*ITAG) Solyc03g119470.1.1 (e_value=5e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62127360-62130518 transcript_region:SL2.40ch03:62127360..62130518+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00036444g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|233; (*GB) gi|224133072|ref|XP_002321475.1| (e_value=7e-79) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=1e-59) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT3G18400.1 (e_value=7e-74) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314;; (*ITAG) Solyc12g036480.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31380780-31383643 transcript_region:SL2.40ch12:31380780..31383643- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbC26279584g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|0.5|2|0|196; (*GB) gi|283099385|gb|ADB08056.1| (e_value=9e-119) microtubule-associated protein [Nicotiana benthamiana];; (*TAIR) AT4G29950.2 (e_value=2e-37) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:14658088-14660370 FORWARD LENGTH=703;; (*ITAG) Solyc07g008840.2.1 (e_value=3e-100) genomic_reference:SL2.40ch07 gene_region:3803764-3808890 transcript_region:SL2.40ch07:3803764..3808890- go_terms:GO:0005622 functional_description:"TBC1 domain family member 5 (AHRD V1 *--- B9A6K1_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbC26279584g0007.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|0|0|2|0|492; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=1e-143) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=1e-105) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT1G64940.1 (e_value=3e-119) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc03g096990.2.1 (e_value=4e-168) genomic_reference:SL2.40ch03 gene_region:52800830-52805612 transcript_region:SL2.40ch03:52800830..52805612+ go_terms:GO:0019825 functional_description:"Cytochrome P450 89A2 (AHRD V1 ***- C89A2_ARATH); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbC26279584g0008.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|61 NbS00001499g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=2e-81) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=6e-70) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=3e-45) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=8e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001499g0003.1 protein AED:0.72 eAED:0.72 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|297733848|emb|CBI15095.3| (e_value=1e-114) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=1e-88) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=4e-90) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023894g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|404; (*GB) gi|225438716|ref|XP_002282505.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262755 [Vitis vinifera];; (*TAIR) AT3G50340.1 (e_value=4e-162) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665333-18666544 REVERSE LENGTH=403;; (*ITAG) Solyc02g090870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46935792-46937000 transcript_region:SL2.40ch02:46935792..46937000+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057465g0001.1 protein AED:0.23 eAED:0.23 QI:318|0.93|0.94|1|0.93|0.88|17|350|541; (*GB) gi|122194121|sp|Q1W2L8.2|GSH1_TOBAC (e_value=0.0) RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor;; (*SWP) sp|Q1W2L8|GSH1_TOBAC (e_value=0.0) Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2;; (*TAIR) AT4G23100.3 (e_value=0.0) | Symbols: GSH1 | glutamate-cysteine ligase | chr4:12103458-12106751 REVERSE LENGTH=522;; (*ITAG) Solyc08g081010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61307398-61315331 transcript_region:SL2.40ch08:61307398..61315331- go_terms:GO:0004357 functional_description:"Glutamate-cysteine ligase (AHRD V1 **** Q7Y0R4_BRAJU); contains Interpro domain(s) IPR011556 Glutamate--cysteine ligase, plant "; GO:0004357 NbS00057465g0009.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.14|1|1|7|0|299; (*GB) gi|224071864|ref|XP_002303585.1| (e_value=7e-63) jumonji domain protein [Populus trichocarpa];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=3e-23) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G63490.1 (e_value=4e-31) | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr1:23544938-23551946 REVERSE LENGTH=1116;; (*ITAG) Solyc08g081000.2.1 (e_value=2e-80) genomic_reference:SL2.40ch08 gene_region:61280219-61304350 transcript_region:SL2.40ch08:61280219..61304350- go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"Lysine-specific demethylase 5D (AHRD V1 *--- KDM5D_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634,GO:0008270,GO:0005622 NbS00028800g0005.1 protein AED:0.12 eAED:0.14 QI:0|0.33|0.25|1|1|1|4|0|438; (*GB) gi|225435060|ref|XP_002281403.1| (e_value=4e-147) PREDICTED: uncharacterized protein LOC100260456 [Vitis vinifera];; (*TAIR) AT5G59830.2 (e_value=2e-94) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24105423-24107071 FORWARD LENGTH=425;; (*ITAG) Solyc06g075790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43487159-43490197 transcript_region:SL2.40ch06:43487159..43490197+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MMN10 (AHRD V1 **-- Q9FJF2_ARATH)"; GO:0033897 NbS00028800g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|118484226|gb|ABK93993.1| (e_value=3e-60) unknown [Populus trichocarpa];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=1e-61) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=2e-61) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00028800g0011.1 protein AED:0.17 eAED:0.17 QI:148|1|1|1|1|1|3|388|96; (*GB) gi|225425350|ref|XP_002275228.1| (e_value=2e-47) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FIJ2|NDUA2_ARATH (e_value=5e-44) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=2 SV=1;; (*TAIR) AT5G47890.1 (e_value=4e-45) | Symbols: | NADH-ubiquinone oxidoreductase B8 subunit, putative | chr5:19388806-19390409 FORWARD LENGTH=97;; (*ITAG) Solyc06g075810.2.1 (e_value=6e-62) genomic_reference:SL2.40ch06 gene_region:43496989-43498602 transcript_region:SL2.40ch06:43496989..43498602- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** C1BWM4_ESOLU); contains Interpro domain(s) IPR016464 NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 "; GO:0008137 NbS00007898g0004.1 protein AED:0.33 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|135 NbS00007898g0001.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|1|2|0|176; (*GB) gi|359493715|ref|XP_002280938.2| (e_value=6e-46) PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=4e-37) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=3e-38) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc04g077320.1.1 (e_value=9e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59868921-59869880 transcript_region:SL2.40ch04:59868921..59869880+ go_terms:GO:0048544,GO:0005529 functional_description:"S-locus glycoprotein (Fragment) (AHRD V1 ***- D7RJY4_OLEEU); contains Interpro domain(s) IPR000858 S-locus glycoprotein "; GO:0048544,GO:0005529 NbS00001630g0003.1 protein AED:0.34 eAED:0.41 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|57014020|ref|YP_173491.1| (e_value=7e-24) hypothetical protein NitaMp154 [Nicotiana tabacum];; (*ITAG) Solyc00g014850.1.1 (e_value=1e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:11073759-11074070 transcript_region:SL2.40ch00:11073759..11074070- functional_description:"ORF86 (AHRD V1 ***- B6VJY4_VITVI)"; NbS00039807g0002.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|104; (*GB) gi|82623403|gb|ABB87116.1| (e_value=2e-25) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=8e-20) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=6e-21) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=4e-29) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00009965g0002.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0|2|71|451; (*GB) gi|147840232|emb|CAN77378.1| (e_value=0.0) hypothetical protein VITISV_043863 [Vitis vinifera];; (*TAIR) AT3G05390.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc01g099330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81375622-81379067 transcript_region:SL2.40ch01:81375622..81379067+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 *-*- Q0IVC7_ORYSJ)"; NbS00018837g0011.1 protein AED:0.05 eAED:0.05 QI:201|1|1|1|0.66|0.5|4|334|194; (*GB) gi|297836674|ref|XP_002886219.1| (e_value=2e-92) hypothetical protein ARALYDRAFT_319835 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O48670|RER1A_ARATH (e_value=9e-92) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=7e-93) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc01g109770.2.1 (e_value=2e-119) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00018837g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|225428418|ref|XP_002283820.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100264004 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=3e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc01g109810.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:88429836-88430887 transcript_region:SL2.40ch01:88429836..88430887+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00018837g0012.1 protein AED:0.23 eAED:0.23 QI:145|1|1|1|1|1|5|133|282; (*GB) gi|224105377|ref|XP_002313789.1| (e_value=3e-132) phenylcoumaran benzylic ether reductase -like protein [Populus trichocarpa];; (*SWP) sp|P52579|IFRH_TOBAC (e_value=5e-84) Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G34540.1 (e_value=2e-119) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr4:16500506-16501932 FORWARD LENGTH=306;; (*ITAG) Solyc03g044720.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:14367236-14368165 transcript_region:SL2.40ch03:14367236..14368165- go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** Q9LD14_THUPL); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00034272g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|289; (*GB) gi|224099099|ref|XP_002311374.1| (e_value=6e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=2e-116) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=1e-123) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc05g053350.2.1 (e_value=8e-159) genomic_reference:SL2.40ch05 gene_region:62620520-62623062 transcript_region:SL2.40ch05:62620520..62623062+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00012958g0005.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|255573495|ref|XP_002527673.1| (e_value=7e-28) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g076870.1.1 (e_value=3e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:57959724-57960461 transcript_region:SL2.40ch08:57959724..57960461+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012958g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|738; (*GB) gi|350539287|ref|NP_001234641.1| (e_value=0.0) MLH1 protein [Solanum lycopersicum];; (*SWP) sp|P40692|MLH1_HUMAN (e_value=4e-126) DNA mismatch repair protein Mlh1 OS=Homo sapiens GN=MLH1 PE=1 SV=1;; (*TAIR) AT4G09140.1 (e_value=0.0) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737;; (*ITAG) Solyc04g045660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:34457125-34496027 transcript_region:SL2.40ch04:34457125..34496027- go_terms:GO:0032137 functional_description:"DNA mismatch repair protein MutL family protein (AHRD V1 ***- C5PD31_COCP7); contains Interpro domain(s) IPR011186 DNA mismatch repair protein Mlh1 "; GO:0032137 NbS00051185g0005.1 protein AED:0.28 eAED:0.28 QI:134|0.5|0.66|1|0.5|0.66|3|641|103 NbS00030394g0001.1 protein AED:0.32 eAED:0.38 QI:0|0|0|1|1|1|3|0|296; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-89) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00030394g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|140; (*ITAG) Solyc04g053070.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00013343g0015.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|0|0.66|3|0|259; (*GB) gi|46250719|dbj|BAD15090.1| (e_value=3e-159) pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P25871|OLPA_TOBAC (e_value=9e-161) Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1;; (*TAIR) AT4G11650.1 (e_value=6e-99) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc08g080670.1.1 (e_value=5e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61057123-61057875 transcript_region:SL2.40ch08:61057123..61057875- go_terms:GO:0005515 functional_description:"Osmotin-like protein (Fragment) (AHRD V1 **-- Q6TGR8_SOLTU); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00013343g0014.1 protein AED:0.33 eAED:0.36 QI:40|0.75|0.52|0.94|0.62|0.64|17|0|1883; (*GB) gi|356527614|ref|XP_003532403.1| (e_value=8e-37) PREDICTED: uncharacterized protein LOC100807457 [Glycine max];; (*ITAG) Solyc08g080690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61062698-61078787 transcript_region:SL2.40ch08:61062698..61078787- go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9I4C0_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00013343g0013.1 protein AED:0.26 eAED:0.26 QI:279|0.66|1|1|1|1|4|176|181; (*GB) gi|255537373|ref|XP_002509753.1| (e_value=1e-46) Elicitor-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q0JBH9|ERG3_ORYSJ (e_value=1e-40) Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1;; (*TAIR) AT1G63220.1 (e_value=4e-35) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:23449017-23450244 FORWARD LENGTH=147;; (*ITAG) Solyc08g080680.2.1 (e_value=1e-48) genomic_reference:SL2.40ch08 gene_region:61059432-61062183 transcript_region:SL2.40ch08:61059432..61062183+ functional_description:"Elicitor-responsive protein 3 (AHRD V1 **-- B6U4Y1_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00013343g0009.1 protein AED:0.61 eAED:0.72 QI:0|0|0|0.66|1|1|6|0|150; (*GB) gi|46250719|dbj|BAD15090.1| (e_value=2e-15) pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P25871|OLPA_TOBAC (e_value=2e-16) Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1;; (*ITAG) Solyc08g080660.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61053978-61054730 transcript_region:SL2.40ch08:61053978..61054730- go_terms:GO:0005515 functional_description:"Osmotin-like protein (Fragment) (AHRD V1 **-- Q8S4L1_SOLNI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00013343g0007.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|85 NbS00020995g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|0.66|0.5|0.66|3|0|368; (*GB) gi|224106189|ref|XP_002314078.1| (e_value=1e-66) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=3e-57) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT1G01720.1 (e_value=2e-58) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc11g065540.1.1 (e_value=9e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48127492-48129178 transcript_region:SL2.40ch11:48127492..48129178+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00032889g0005.1 protein AED:0.17 eAED:0.18 QI:1323|0.7|0.72|0.90|0.9|0.81|11|0|778; (*GB) gi|255555123|ref|XP_002518599.1| (e_value=0.0) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|O81905|SD18_ARATH (e_value=1e-174) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=1e-175) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc02g079630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38716738-38720093 transcript_region:SL2.40ch02:38716738..38720093+ go_terms:GO:0019199,GO:0004674 functional_description:"Receptor kinase (AHRD V1 **** Q39086_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00018435g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|1|1|4|0|342; (*GB) gi|224134647|ref|XP_002321874.1| (e_value=3e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WUQ1|BAG1_ARATH (e_value=9e-114) BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT5G52060.1 (e_value=7e-115) | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342;; (*ITAG) Solyc03g026220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8010313-8012274 transcript_region:SL2.40ch03:8010313..8012274+ go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00022485g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|742; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=0.0) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=0.0) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc05g053090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00004542g0005.1 protein AED:0.37 eAED:0.38 QI:400|0.6|0.63|1|0.9|0.81|11|482|407; (*GB) gi|4138265|emb|CAA06925.1| (e_value=0.0) Avr9 elicitor response protein [Nicotiana tabacum];; (*SWP) sp|Q6NQB7|B3GT7_ARATH (e_value=0.0) Beta-1,3-galactosyltransferase 7 OS=Arabidopsis thaliana GN=B3GALT7 PE=2 SV=1;; (*TAIR) AT1G77810.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:29260899-29263001 REVERSE LENGTH=384;; (*ITAG) Solyc11g013490.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6543160-6549507 transcript_region:SL2.40ch11:6543160..6549507+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00024956g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|0|107; (*GB) gi|357153211|ref|XP_003576376.1| (e_value=2e-56) PREDICTED: protein yippee-like At4g27745-like [Brachypodium distachyon];; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=2e-55) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=1e-56) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc05g050510.2.1 (e_value=4e-64) genomic_reference:SL2.40ch05 gene_region:59792534-59793577 transcript_region:SL2.40ch05:59792534..59793577- go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00024956g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.57|1|0.66|0.71|7|0|342; (*GB) gi|224067834|ref|XP_002302556.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q16MG9|ASNA_AEDAE (e_value=4e-104) ATPase ASNA1 homolog OS=Aedes aegypti GN=AAEL011136 PE=3 SV=1;; (*TAIR) AT1G01910.4 (e_value=5e-180) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:313595-315831 REVERSE LENGTH=353;; (*ITAG) Solyc05g050490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59778185-59783636 transcript_region:SL2.40ch05:59778185..59783636+ go_terms:GO:0006875,GO:0006468 functional_description:"ATPase (AHRD V1 *-*- D3E0U6_METRM); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0006875,GO:0006468 NbS00024956g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|255564597|ref|XP_002523293.1| (e_value=2e-51) ATP synthase delta chain, putative [Ricinus communis];; (*SWP) sp|P11402|ATPD_SPIOL (e_value=3e-19) ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2;; (*TAIR) AT4G00895.1 (e_value=2e-20) | Symbols: | ATPase, F1 complex, OSCP/delta subunit protein | chr4:381823-382398 FORWARD LENGTH=191;; (*ITAG) Solyc05g050500.1.1 (e_value=1e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:59787255-59787980 transcript_region:SL2.40ch05:59787255..59787980+ go_terms:GO:0045261 functional_description:"ATP synthase F1 delta subunit (AHRD V1 ***- B4B4T7_9CHRO); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00001686g0005.1 protein AED:0.34 eAED:0.35 QI:0|0.33|0|1|0.33|0.5|4|0|267; (*GB) gi|225454479|ref|XP_002276827.1| (e_value=1e-86) PREDICTED: dihydroflavonol-4-reductase-like [Vitis vinifera];; (*SWP) sp|Q9SEV0|BAN_ARATH (e_value=8e-23) Anthocyanidin reductase OS=Arabidopsis thaliana GN=BAN PE=1 SV=2;; (*TAIR) AT1G61720.1 (e_value=6e-24) | Symbols: BAN | NAD(P)-binding Rossmann-fold superfamily protein | chr1:22791326-22792757 REVERSE LENGTH=340;; (*ITAG) Solyc10g009540.1.1 (e_value=7e-108) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3669516-3671834 transcript_region:SL2.40ch10:3669516..3671834+ go_terms:GO:0033729 functional_description:"Anthocyanidin reductase (AHRD V1 **** D3YBD5_TRIRP); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00023793g0006.1 protein AED:0.05 eAED:0.05 QI:41|1|1|1|0|0.33|3|58|363; (*GB) gi|302142145|emb|CBI19348.3| (e_value=1e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=6e-68) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=2e-70) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc04g077260.2.1 (e_value=3e-106) genomic_reference:SL2.40ch04 gene_region:59829131-59830896 transcript_region:SL2.40ch04:59829131..59830896+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00023793g0005.1 protein AED:0.08 eAED:0.08 QI:175|0.75|0.88|1|1|1|9|288|334; (*GB) gi|14280354|gb|AAK57535.1| (e_value=2e-162) branched-chain amino acid aminotransferase [Capsicum annuum];; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=3e-135) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=2e-136) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc12g088220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62104278-62110185 transcript_region:SL2.40ch12:62104278..62110185+ go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00006190g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|333; (*GB) gi|167614481|gb|ABZ89800.1| (e_value=8e-100) pectin methylesterase-like protein [Taiwania cryptomerioides];; (*SWP) sp|Q43062|PME_PRUPE (e_value=8e-95) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G05620.1 (e_value=8e-94) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=543;; (*ITAG) Solyc00g023470.1.1 (e_value=8e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00026655g0005.1 protein AED:0.17 eAED:0.17 QI:184|0.87|1|1|0.62|0.77|9|256|322; (*GB) gi|225461886|ref|XP_002264515.1| (e_value=4e-131) PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 [Vitis vinifera];; (*SWP) sp|Q8VYE2|TIM50_ARATH (e_value=2e-96) Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1;; (*TAIR) AT1G55900.1 (e_value=1e-97) | Symbols: TIM50, emb1860 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:20903163-20905420 FORWARD LENGTH=376;; (*ITAG) Solyc10g006020.2.1 (e_value=6e-151) genomic_reference:SL2.40ch10 gene_region:769462-778426 transcript_region:SL2.40ch10:769462..778426+ functional_description:"Mitochondrial import inner membrane translocase subunit tim50 (AHRD V1 *--- C8V8E4_EMENI); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00045217g0001.1 protein AED:0.48 eAED:0.50 QI:0|0|0|0.66|1|1|3|0|276; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-20) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00019633g0014.1 protein AED:0.04 eAED:0.09 QI:0|0|0|1|0.5|0.33|3|0|414; (*GB) gi|224138024|ref|XP_002326499.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4R8H2|DNJC2_MACFA (e_value=2e-12) DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1;; (*TAIR) AT5G45420.1 (e_value=1e-55) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:18405668-18406597 REVERSE LENGTH=309;; (*ITAG) Solyc08g077290.1.1 (e_value=3e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58364439-58365398 transcript_region:SL2.40ch08:58364439..58365398- go_terms:GO:0003677 functional_description:"DnaJ homolog subfamily C member 2 (AHRD V1 *--- DNJC2_MACFA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0003677 NbS00019633g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|225427308|ref|XP_002282023.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera];; (*TAIR) AT3G59840.1 (e_value=2e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22105853-22106146 REVERSE LENGTH=97;; (*ITAG) Solyc08g077280.1.1 (e_value=2e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:58361375-58361683 transcript_region:SL2.40ch08:58361375..58361683- functional_description:"Allyl alcohol dehydrogenase-like protein (AHRD V1 ***- Q9M1Z0_ARATH)"; NbS00019633g0010.1 protein AED:0.25 eAED:0.25 QI:45|0.71|0.75|0.87|0.71|0.87|8|148|231; (*GB) gi|224136530|ref|XP_002326883.1| (e_value=1e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|O04905|UMPK_ARATH (e_value=7e-94) UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1;; (*TAIR) AT5G26667.3 (e_value=5e-95) | Symbols: PYR6 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9276659-9278091 FORWARD LENGTH=202;; (*ITAG) Solyc08g077300.2.1 (e_value=5e-132) genomic_reference:SL2.40ch08 gene_region:58367659-58372762 transcript_region:SL2.40ch08:58367659..58372762- go_terms:GO:0009041 functional_description:"Adenylate kinase (AHRD V1 **** B6TE58_MAIZE); contains Interpro domain(s) IPR006266 UMP-CMP kinase "; GO:0009041 NbS00019633g0012.1 protein AED:0.09 eAED:0.09 QI:0|1|0.88|1|1|1|9|329|597; (*GB) gi|225427304|ref|XP_002281987.1| (e_value=0.0) PREDICTED: phosphoacetylglucosamine mutase isoform 1 [Vitis vinifera];; (*SWP) sp|P57750|AGM1_ARATH (e_value=0.0) Phosphoacetylglucosamine mutase OS=Arabidopsis thaliana GN=DRT101 PE=1 SV=1;; (*TAIR) AT5G18070.1 (e_value=0.0) | Symbols: DRT101 | phosphoglucosamine mutase-related | chr5:5981117-5982787 FORWARD LENGTH=556;; (*ITAG) Solyc08g077270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58353284-58359554 transcript_region:SL2.40ch08:58353284..58359554+ go_terms:GO:0004610 functional_description:"Phosphoacetylglucosamine mutase (AHRD V1 **** B5X1B2_SALSA); contains Interpro domain(s) IPR016657 Phosphoacetylglucosamine mutase "; GO:0004610 NbS00041621g0008.1 protein AED:0.04 eAED:0.08 QI:0|1|0|1|1|1|2|0|126; (*GB) gi|359480863|ref|XP_002275476.2| (e_value=4e-18) PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Vitis vinifera];; (*SWP) sp|Q9FPS0|UBP27_ARATH (e_value=4e-16) Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1;; (*TAIR) AT4G39370.2 (e_value=3e-17) | Symbols: UBP27 | ubiquitin-specific protease 27 | chr4:18306392-18307931 FORWARD LENGTH=361;; (*ITAG) Solyc04g051400.1.1 (e_value=4e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49678659-49680745 transcript_region:SL2.40ch04:49678659..49680745+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9HG62_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00041621g0012.1 protein AED:0.57 eAED:0.60 QI:0|0|0|0.5|0|0.5|2|0|83 NbS00041621g0010.1 protein AED:0.50 eAED:0.75 QI:0|0|0|1|1|1|2|0|67 NbS00041621g0011.1 protein AED:0.47 eAED:0.61 QI:0|0|0|0.5|0|0|2|0|85; (*ITAG) Solyc04g050030.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00007582g0003.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|1|1|3|0|335; (*GB) gi|57013986|ref|YP_173458.1| (e_value=3e-91) hypothetical protein NitaMp120 [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=5e-87) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=5e-81) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc11g039980.1.1 (e_value=5e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00007582g0021.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|0|0.5|2|0|84 NbS00007582g0025.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.25|0.66|0.75|4|0|147 NbS00007582g0019.1 protein AED:0.27 eAED:0.27 QI:1024|1|1|1|0.33|0.28|7|516|134; (*GB) gi|350539761|ref|NP_001234267.1| (e_value=4e-77) 14-3-3 protein 8 [Solanum lycopersicum];; (*SWP) sp|P93213|14338_SOLLC (e_value=1e-78) 14-3-3 protein 8 OS=Solanum lycopersicum GN=TFT8 PE=2 SV=2;; (*TAIR) AT1G34760.2 (e_value=6e-66) | Symbols: GRF11, GF14 OMICRON, RHS5 | general regulatory factor 11 | chr1:12743981-12745603 REVERSE LENGTH=252;; (*ITAG) Solyc12g010860.1.1 (e_value=8e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3781557-3784182 transcript_region:SL2.40ch12:3781557..3784182- go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha (AHRD V1 **-- 1433B_XENTR); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00007582g0026.1 protein AED:0.31 eAED:0.51 QI:270|0.25|0.6|1|0.5|0.6|5|21|122 NbS00007582g0004.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.16|1|1|6|0|243; (*GB) gi|57013989|ref|YP_173461.1| (e_value=8e-24) hypothetical protein NitaMp123 [Nicotiana tabacum]; NbS00007582g0023.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|2|0|227; (*GB) gi|164685598|gb|ABY66745.1| (e_value=1e-104) atp1, partial (mitochondrion) [Garrya elliptica];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-104) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=5e-104) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00007582g0024.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.66|0|0|3|0|181; (*GB) gi|57013988|ref|YP_173460.1| (e_value=7e-65) hypothetical protein NitaMp122 [Nicotiana tabacum]; NbS00009048g0004.1 protein AED:0.08 eAED:0.19 QI:104|0.5|0.66|1|0|0.33|3|0|157; (*GB) gi|225463376|ref|XP_002271571.1| (e_value=2e-39) PREDICTED: uncharacterized protein LOC100251997 [Vitis vinifera];; (*TAIR) AT5G46420.1 (e_value=2e-33) | Symbols: | 16S rRNA processing protein RimM family | chr5:18829999-18832893 FORWARD LENGTH=653;; (*ITAG) Solyc02g071280.2.1 (e_value=1e-67) genomic_reference:SL2.40ch02 gene_region:35345284-35355314 transcript_region:SL2.40ch02:35345284..35355314+ go_terms:GO:0005840,GO:0008152,GO:0006364 functional_description:"Ribosome maturation factor rimM (AHRD V1 *-*- A4CTC3_SYNPV); contains Interpro domain(s) IPR011961 16S rRNA processing protein RimM "; GO:0005840,GO:0008152,GO:0006364 NbS00005186g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|0.75|1|1|4|604|739; (*GB) gi|255542480|ref|XP_002512303.1| (e_value=2e-58) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P37707|B2_DAUCA (e_value=3e-11) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G32910.1 (e_value=4e-45) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:13959685-13961989 FORWARD LENGTH=691;; (*ITAG) Solyc06g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2798052-2800199 transcript_region:SL2.40ch06:2798052..2800199+ functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00005186g0021.1 protein AED:0.05 eAED:0.05 QI:425|0.75|0.55|1|0.75|0.66|9|210|1054; (*GB) gi|255559354|ref|XP_002520697.1| (e_value=2e-86) pax transcription activation domain interacting protein, putative [Ricinus communis];; (*SWP) sp|Q6ZW49|PAXI1_HUMAN (e_value=8e-25) PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2;; (*TAIR) AT3G21480.1 (e_value=7e-67) | Symbols: | BRCT domain-containing DNA repair protein | chr3:7567730-7571990 FORWARD LENGTH=1041;; (*ITAG) Solyc06g008840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2790006-2794520 transcript_region:SL2.40ch06:2790006..2794520+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00005186g0006.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|356505518|ref|XP_003521537.1| (e_value=2e-43) PREDICTED: glutaredoxin-C11-like [Glycine max];; (*SWP) sp|Q9LYC6|GRC11_ARATH (e_value=4e-40) Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1;; (*TAIR) AT3G62950.1 (e_value=3e-41) | Symbols: | Thioredoxin superfamily protein | chr3:23266303-23266614 FORWARD LENGTH=103;; (*ITAG) Solyc06g008750.1.1 (e_value=4e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2669060-2669368 transcript_region:SL2.40ch06:2669060..2669368+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9I9W1_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00005186g0007.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|156891141|gb|ABU96708.1| (e_value=7e-65) glutaredoxin [Solanum tuberosum];; (*SWP) sp|O82255|GRC13_ARATH (e_value=2e-47) Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1;; (*TAIR) AT2G47880.1 (e_value=1e-48) | Symbols: | Glutaredoxin family protein | chr2:19605124-19605432 FORWARD LENGTH=102;; (*ITAG) Solyc06g008760.1.1 (e_value=1e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2680655-2680960 transcript_region:SL2.40ch06:2680655..2680960+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B3F8F2_SOLTU); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00005186g0015.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|96; (*GB) gi|147791475|emb|CAN74505.1| (e_value=1e-30) hypothetical protein VITISV_015889 [Vitis vinifera];; (*SWP) sp|O80492|P2C05_ARATH (e_value=7e-25) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=5e-26) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00005186g0023.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|0.75|4|0|266; (*GB) gi|225436851|ref|XP_002271734.1| (e_value=1e-138) PREDICTED: LEC14B homolog [Vitis vinifera];; (*SWP) sp|O24467|LE14B_PRUAR (e_value=4e-110) LEC14B homolog OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT4G03020.2 (e_value=3e-123) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493;; (*ITAG) Solyc06g008880.2.1 (e_value=9e-152) genomic_reference:SL2.40ch06 gene_region:2824969-2831802 transcript_region:SL2.40ch06:2824969..2831802+ go_terms:GO:0005112,GO:0042923 functional_description:"WD repeat protein 23 (AHRD V1 **-- B0WXG6_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005112,GO:0042923 NbS00005186g0020.1 protein AED:0.26 eAED:0.43 QI:0|0|0|1|0|0|3|0|103 NbS00029762g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|162; (*GB) gi|225424029|ref|XP_002283623.1| (e_value=2e-52) PREDICTED: zinc finger protein 6 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=5e-24) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT1G68360.1 (e_value=3e-36) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g009180.1.1 (e_value=2e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3315685-3316332 transcript_region:SL2.40ch05:3315685..3316332- go_terms:GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 ***- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00017063g0004.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|143; (*ITAG) Solyc01g106700.2.1 (e_value=8e-32) genomic_reference:SL2.40ch01 gene_region:86228943-86229953 transcript_region:SL2.40ch01:86228943..86229953+ go_terms:GO:0017075 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q75V01_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00017063g0008.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0.33|3|0|445; (*GB) gi|225429161|ref|XP_002270964.1| (e_value=3e-83) PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=1e-54) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=9e-56) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=1e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00025836g0008.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.6|0.5|0.8|5|0|241; (*GB) gi|358347715|ref|XP_003637900.1| (e_value=1e-12) F-box/FBD/LRR-repeat protein, partial [Medicago truncatula];; (*ITAG) Solyc05g010360.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005520g0012.1 protein AED:0.37 eAED:0.37 QI:89|1|1|1|1|1|2|131|159; (*GB) gi|356569974|ref|XP_003553168.1| (e_value=7e-49) PREDICTED: uncharacterized protein LOC100807863 [Glycine max];; (*TAIR) AT5G58250.1 (e_value=3e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23559558-23560372 FORWARD LENGTH=211;; (*ITAG) Solyc06g007760.2.1 (e_value=3e-81) genomic_reference:SL2.40ch06 gene_region:1716214-1719252 transcript_region:SL2.40ch06:1716214..1719252+ functional_description:"Ycf54 protein (AHRD V1 *--- Q8DIT2_THEEB); contains Interpro domain(s) IPR019616 Protein of unknown function DUF2488 "; NbS00005520g0001.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|255764587|gb|ACU33853.1| (e_value=2e-90) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=9e-34) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-34) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005520g0007.1 protein AED:0.56 eAED:0.62 QI:0|0|0|0.75|1|1|4|0|344; (*GB) gi|255764587|gb|ACU33853.1| (e_value=4e-126) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=7e-60) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=5e-61) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007740.1.1 (e_value=3e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005520g0013.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|2|0|459; (*GB) gi|22128587|gb|AAM52339.1| (e_value=1e-166) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=4e-89) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=3e-90) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00033872g0003.1 protein AED:0.27 eAED:0.27 QI:72|0|0.5|1|0|0.5|2|321|105; (*GB) gi|356549138|ref|XP_003542954.1| (e_value=9e-19) PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 2 [Glycine max];; (*TAIR) AT4G08320.2 (e_value=2e-13) | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:5252853-5254990 FORWARD LENGTH=427;; (*ITAG) Solyc11g012900.1.1 (e_value=2e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5682714-5696581 transcript_region:SL2.40ch11:5682714..5696581- go_terms:GO:0005488 functional_description:"Small glutamine-rich tetratricopeptide repeat-containing protein A (AHRD V1 *--- C1BM93_OSMMO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00033872g0002.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|1|1|4|0|129; (*GB) gi|255545490|ref|XP_002513805.1| (e_value=3e-48) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*SWP) sp|Q80W98|SGTB_RAT (e_value=5e-24) Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1;; (*TAIR) AT4G08320.2 (e_value=8e-46) | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:5252853-5254990 FORWARD LENGTH=427;; (*ITAG) Solyc11g012900.1.1 (e_value=5e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5682714-5696581 transcript_region:SL2.40ch11:5682714..5696581- go_terms:GO:0005488 functional_description:"Small glutamine-rich tetratricopeptide repeat-containing protein A (AHRD V1 *--- C1BM93_OSMMO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00033872g0001.1 protein AED:0.50 eAED:0.66 QI:0|0|0|0.75|1|1|4|0|119; (*GB) gi|224082286|ref|XP_002306633.1| (e_value=4e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT4G08320.1 (e_value=8e-15) | Symbols: TPR8 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:5252853-5254990 FORWARD LENGTH=426;; (*ITAG) Solyc11g012900.1.1 (e_value=4e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5682714-5696581 transcript_region:SL2.40ch11:5682714..5696581- go_terms:GO:0005488 functional_description:"Small glutamine-rich tetratricopeptide repeat-containing protein A (AHRD V1 *--- C1BM93_OSMMO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00002470g0009.1 protein AED:0.05 eAED:0.05 QI:148|1|1|1|0.85|0.87|8|275|449; (*GB) gi|255566211|ref|XP_002524093.1| (e_value=1e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35880.1 (e_value=4e-49) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr2:15063204-15065259 REVERSE LENGTH=432;; (*ITAG) Solyc10g081730.1.1 (e_value=4e-166) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62074358-62076681 transcript_region:SL2.40ch10:62074358..62076681- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00002470g0011.1 protein AED:0.23 eAED:0.27 QI:116|0.5|0.63|1|0.6|0.72|11|231|418; (*GB) gi|359481051|ref|XP_002270570.2| (e_value=3e-111) PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Vitis vinifera];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=7e-100) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=5e-101) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc10g081710.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62050374-62054006 transcript_region:SL2.40ch10:62050374..62054006+ go_terms:GO:0008270 functional_description:"RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00002470g0002.1 protein AED:0.28 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|225439352|ref|XP_002270606.1| (e_value=0.0) PREDICTED: fasciclin-like arabinogalactan protein 17 [Vitis vinifera];; (*SWP) sp|Q66GR0|FLA17_ARATH (e_value=0.0) Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1;; (*TAIR) AT5G06390.1 (e_value=0.0) | Symbols: FLA17 | FASCICLIN-like arabinogalactan protein 17 precursor | chr5:1952939-1955047 FORWARD LENGTH=458;; (*ITAG) Solyc10g081720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62066241-62069437 transcript_region:SL2.40ch10:62066241..62069437+ functional_description:"Fasciclin-like arabinogalactan protein 14 (AHRD V1 ***- A9XTL9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00051403g0004.1 protein AED:0.17 eAED:0.17 QI:413|1|1|1|0.83|0.71|7|532|249; (*GB) gi|224108313|ref|XP_002314801.1| (e_value=2e-140) predicted protein [Populus trichocarpa];; (*TAIR) AT1G70900.1 (e_value=4e-133) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23110.4); Has 57 Blast hits to 57 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26732456-26733637 FORWARD LENGTH=244;; (*ITAG) Solyc04g007730.2.1 (e_value=6e-166) genomic_reference:SL2.40ch04 gene_region:1405640-1410539 transcript_region:SL2.40ch04:1405640..1410539- functional_description:"Unknown Protein (AHRD V1)"; NbS00016727g0016.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.42|1|0.66|0.57|7|0|729; (*GB) gi|222350815|dbj|BAH19347.1| (e_value=0.0) S locus glycoprotein like protein [Nicotiana benthamiana];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc02g030300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16184082-16189781 transcript_region:SL2.40ch02:16184082..16189781+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00016727g0015.1 protein AED:0.32 eAED:0.32 QI:27|0.33|0|0.75|0.66|0.75|4|0|180; (*GB) gi|225451340|ref|XP_002274609.1| (e_value=8e-91) PREDICTED: uncharacterized protein LOC100248755 [Vitis vinifera];; (*TAIR) AT3G04340.1 (e_value=3e-82) | Symbols: emb2458 | FtsH extracellular protease family | chr3:1146943-1153341 REVERSE LENGTH=1320;; (*ITAG) Solyc02g032960.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:20240323-20261625 transcript_region:SL2.40ch02:20240323..20261625+ go_terms:GO:0016887 functional_description:"Cell division protease FtsH homolog (AHRD V1 *--- C5NVJ0_9BACL); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00016727g0023.1 protein AED:0.14 eAED:0.14 QI:0|1|0.4|1|0.75|0.4|5|0|221; (*GB) gi|255560969|ref|XP_002521497.1| (e_value=1e-97) uracil DNA glycosylase, putative [Ricinus communis];; (*SWP) sp|C1DQR0|UNG_AZOVD (e_value=2e-64) Uracil-DNA glycosylase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ung PE=3 SV=1;; (*TAIR) AT3G18630.1 (e_value=8e-88) | Symbols: ATUNG, UNG | uracil dna glycosylase | chr3:6411325-6413002 REVERSE LENGTH=330;; (*ITAG) Solyc02g021060.2.1 (e_value=6e-115) genomic_reference:SL2.40ch02 gene_region:12120389-12132004 transcript_region:SL2.40ch02:12120389..12132004- go_terms:GO:0004844 functional_description:"Uracil DNA glycosylase family protein (AHRD V1 **** D7L931_ARALY); contains Interpro domain(s) IPR002043 Uracil-DNA glycosylase "; GO:0004844 NbS00016727g0021.1 protein AED:0.39 eAED:0.59 QI:292|0|0.5|1|0|0.5|2|0|12 NbS00016727g0022.1 protein AED:0.76 eAED:0.76 QI:8|0|0|0.33|1|0.66|3|70|38 NbS00035427g0004.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|255540055|ref|XP_002511092.1| (e_value=2e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G50930.1 (e_value=2e-25) | Symbols: | Histone superfamily protein | chr5:20722069-20724317 FORWARD LENGTH=242;; (*ITAG) Solyc07g054400.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60051104-60051544 transcript_region:SL2.40ch07:60051104..60051544+ go_terms:GO:0003677 functional_description:"Centromere protein S (AHRD V1 *-*- CENPS_HUMAN); contains Interpro domain(s) IPR009072 Histone-fold "; GO:0003677 NbS00059570g0003.1 protein AED:0.12 eAED:0.12 QI:282|1|1|1|1|1|3|499|177; (*GB) gi|4887018|gb|AAD32145.1|AF123507_1 (e_value=6e-86) Nt-iaa4.5 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24542|AX22D_VIGRR (e_value=2e-74) Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1;; (*TAIR) AT5G43700.1 (e_value=1e-71) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc06g084070.2.1 (e_value=4e-84) genomic_reference:SL2.40ch06 gene_region:45616812-45617639 transcript_region:SL2.40ch06:45616812..45617639+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00048949g0006.1 protein AED:0.31 eAED:0.32 QI:0|0.83|0.71|1|0.83|0.85|7|0|395; (*GB) gi|255580851|ref|XP_002531245.1| (e_value=9e-150) sodium-bile acid cotransporter, putative [Ricinus communis];; (*SWP) sp|O34524|YOCS_BACSU (e_value=5e-42) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT1G78560.1 (e_value=9e-146) | Symbols: | Sodium Bile acid symporter family | chr1:29546846-29548764 REVERSE LENGTH=401;; (*ITAG) Solyc12g005410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:246939-249929 transcript_region:SL2.40ch12:246939..249929- go_terms:GO:0016020 functional_description:"Bile acid sodium symporter family protein (AHRD V1 ***- D7KVC3_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0016020 NbS00003720g0002.1 protein AED:0.29 eAED:0.29 QI:8|-1|0|1|-1|0|1|0|136; (*GB) gi|302398643|gb|ADL36616.1| (e_value=3e-46) BZIP domain class transcription factor [Malus x domestica];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=7e-20) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=2e-40) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc04g080740.1.1 (e_value=6e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62438744-62439187 transcript_region:SL2.40ch04:62438744..62439187+ go_terms:GO:0046982 functional_description:"BZIP transcription factor family protein (AHRD V1 **-- D7KSN7_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0046982 NbS00046502g0011.1 protein AED:0.06 eAED:0.06 QI:197|0.88|0.7|1|0.88|0.8|10|0|676; (*GB) gi|359490241|ref|XP_002268933.2| (e_value=0.0) PREDICTED: GTPase Der-like [Vitis vinifera];; (*SWP) sp|A7HYV8|DER_PARL1 (e_value=2e-86) GTPase Der OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=der PE=3 SV=1;; (*TAIR) AT5G39960.1 (e_value=0.0) | Symbols: | GTP binding;GTP binding | chr5:15994195-15996820 FORWARD LENGTH=621;; (*ITAG) Solyc10g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:704986-709412 transcript_region:SL2.40ch10:704986..709412- go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein engA (AHRD V1 **** A9TY56_PHYPA); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0043022,GO:0003924 NbS00046502g0012.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|0|0|2|0|126; (*GB) gi|22775562|dbj|BAC11949.1| (e_value=2e-55) phosphoprotein NtEPb1 [Nicotiana tabacum];; (*ITAG) Solyc02g093650.2.1 (e_value=1e-34) genomic_reference:SL2.40ch02 gene_region:49007532-49008190 transcript_region:SL2.40ch02:49007532..49008190+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00046502g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.71|0.62|0.87|0.28|0.37|8|0|207; (*GB) gi|359488646|ref|XP_002268255.2| (e_value=6e-104) PREDICTED: cystinosin homolog [Vitis vinifera];; (*SWP) sp|P57758|CTNS_ARATH (e_value=4e-95) Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1;; (*TAIR) AT5G40670.1 (e_value=3e-96) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270;; (*ITAG) Solyc02g093700.2.1 (e_value=4e-126) genomic_reference:SL2.40ch02 gene_region:49026605-49028469 transcript_region:SL2.40ch02:49026605..49028469+ go_terms:GO:0015184 functional_description:"Cystine transporter Cystinosin (AHRD V1 *-** Q2URL9_ASPOR); contains Interpro domain(s) IPR005282 Lysosomal cystine transporter "; GO:0015184 NbS00046502g0008.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|62; (*GB) gi|82623421|gb|ABB87125.1| (e_value=6e-21) hypothetical protein [Solanum tuberosum];; (*SWP) sp|P19950|RS141_MAIZE (e_value=2e-20) 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1;; (*TAIR) AT3G52580.1 (e_value=4e-21) | Symbols: | Ribosomal protein S11 family protein | chr3:19503324-19504701 FORWARD LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=4e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00008446g0013.1 protein AED:0.56 eAED:0.60 QI:0|0.2|0|0.66|0.2|0.16|6|0|230; (*GB) gi|356560787|ref|XP_003548669.1| (e_value=7e-63) PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max];; (*SWP) sp|P42749|UBC5_ARATH (e_value=5e-48) Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2;; (*TAIR) AT1G63800.1 (e_value=4e-49) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc01g094810.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:77982018-77985335 transcript_region:SL2.40ch01:77982018..77985335- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 **** D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0004842 NbS00008446g0012.1 protein AED:0.15 eAED:0.16 QI:0|0.66|0.62|1|1|1|16|0|2082; (*GB) gi|359489634|ref|XP_002276245.2| (e_value=0.0) PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera];; (*SWP) sp|Q6EVK6|BRM_ARATH (e_value=0.0) ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1;; (*TAIR) AT2G46020.2 (e_value=0.0) | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-18931769 FORWARD LENGTH=2193;; (*ITAG) Solyc01g094800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77968890-77980886 transcript_region:SL2.40ch01:77968890..77980886+ go_terms:GO:0030528,GO:0003677 functional_description:"Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--* CHD1_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0030528,GO:0003677 NbS00049311g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|224062230|ref|XP_002300800.1| (e_value=5e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55190.1 (e_value=8e-13) | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acceptor) family protein | chr1:20588450-20589019 FORWARD LENGTH=189;; (*ITAG) Solyc09g066000.1.1 (e_value=2e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:59863414-59863944 transcript_region:SL2.40ch09:59863414..59863944- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00049311g0010.1 protein AED:0.14 eAED:0.14 QI:589|0.6|0.5|1|0.8|0.5|6|374|397; (*GB) gi|225437241|ref|XP_002275598.1| (e_value=2e-164) PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=2e-109) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=1e-110) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc09g065990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59852201-59862983 transcript_region:SL2.40ch09:59852201..59862983+ go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbC23582732g0001.1 protein AED:0.00 eAED:0.00 QI:55|1|1|1|0|0|2|41|15 NbS00005766g0005.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|62 NbS00001627g0012.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0|1|0.5|0.33|3|0|473; (*GB) gi|19110917|gb|AAL85347.1|AF479625_1 (e_value=0.0) EDS1-like protein [Nicotiana benthamiana];; (*TAIR) AT3G48090.2 (e_value=9e-116) | Symbols: EDS1, ATEDS1 | alpha/beta-Hydrolases superfamily protein | chr3:17755553-17757292 REVERSE LENGTH=515;; (*ITAG) Solyc06g071280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40242657-40246003 transcript_region:SL2.40ch06:40242657..40246003- go_terms:GO:0005515,GO:0004871 functional_description:"Enhanced disease susceptibility 1 (Fragment) (AHRD V1 **-- B2BDU7_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0004871 NbS00001627g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.72|0.75|0.83|1|1|12|0|363; (*GB) gi|237506885|gb|ACQ99195.1| (e_value=1e-171) betaine aldehyde dehydrogenase [Lycium barbarum];; (*SWP) sp|Q9STS1|BADH2_ARATH (e_value=2e-148) Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1;; (*TAIR) AT3G48170.1 (e_value=1e-149) | Symbols: ALDH10A9 | aldehyde dehydrogenase 10A9 | chr3:17786290-17789918 REVERSE LENGTH=503;; (*ITAG) Solyc06g071290.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:40246444-40251568 transcript_region:SL2.40ch06:40246444..40251568- go_terms:GO:0004028 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00001627g0013.1 protein AED:0.09 eAED:0.09 QI:170|1|0.66|1|1|1|3|75|352; (*GB) gi|113205160|gb|ABI34275.1| (e_value=2e-116) hypothetical protein LES1_20t00015 [Solanum lycopersicum];; (*SWP) sp|P34909|NOT4_YEAST (e_value=7e-12) General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT2 PE=1 SV=1;; (*TAIR) AT5G62910.1 (e_value=3e-48) | Symbols: | RING/U-box superfamily protein | chr5:25250830-25252015 FORWARD LENGTH=327;; (*ITAG) Solyc06g071270.2.1 (e_value=9e-137) genomic_reference:SL2.40ch06 gene_region:40237668-40241449 transcript_region:SL2.40ch06:40237668..40241449+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00006157g0012.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.5|1|1|0.75|4|0|213; (*GB) gi|356561051|ref|XP_003548799.1| (e_value=2e-64) PREDICTED: transportin-3-like [Glycine max];; (*TAIR) AT1G12930.1 (e_value=2e-49) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094600.2.1 (e_value=5e-110) genomic_reference:SL2.40ch02 gene_region:49731300-49733739 transcript_region:SL2.40ch02:49731300..49733739- functional_description:"Os11g0543800 protein (Fragment) (AHRD V1 *-*- Q0ISA5_ORYSJ)"; NbS00006157g0015.1 protein AED:0.23 eAED:0.23 QI:91|0.5|0.2|0.6|0.5|0.8|5|0|186; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=9e-62) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=2e-48) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094610.1.1 (e_value=9e-103) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49748558-49757941 transcript_region:SL2.40ch02:49748558..49757941- functional_description:"Transportin (AHRD V1 ***- Q17F50_AEDAE)"; NbS00006157g0010.1 protein AED:0.25 eAED:0.28 QI:525|0.37|0.52|0.82|0.43|0.41|17|368|467; (*GB) gi|224128700|ref|XP_002320397.1| (e_value=5e-126) predicted protein [Populus trichocarpa];; (*TAIR) AT3G26670.3 (e_value=3e-112) | Symbols: | Protein of unknown function (DUF803) | chr3:9798236-9800562 REVERSE LENGTH=441;; (*ITAG) Solyc01g086730.2.1 (e_value=8e-77) genomic_reference:SL2.40ch01 gene_region:73445060-73446574 transcript_region:SL2.40ch01:73445060..73446574+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- Q4WRL6_ASPFU); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00006157g0013.1 protein AED:0.34 eAED:1.00 QI:0|0|0|1|0|0|2|0|82 NbS00020238g0005.1 protein AED:0.31 eAED:0.71 QI:0|1|0|1|1|0.5|2|0|83; (*ITAG) Solyc10g049530.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00020238g0004.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|123 NbS00034702g0008.1 protein AED:0.27 eAED:0.34 QI:268|0.75|0.8|1|0.5|0.6|5|0|140; (*GB) gi|225438299|ref|XP_002270204.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100262774 [Vitis vinifera];; (*TAIR) AT1G34570.1 (e_value=8e-17) | Symbols: | Essential protein Yae1, N-terminal | chr1:12655297-12656444 REVERSE LENGTH=208;; (*ITAG) Solyc01g068450.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:70089237-70090777 transcript_region:SL2.40ch01:70089237..70090777+ functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW04_ARATH); contains Interpro domain(s) IPR019191 Essential protein Yae1, N-terminal "; NbS00034702g0007.1 protein AED:0.25 eAED:0.25 QI:169|1|1|1|1|1|7|105|404; (*GB) gi|224053314|ref|XP_002297759.1| (e_value=2e-131) predicted protein [Populus trichocarpa];; (*TAIR) AT2G38780.1 (e_value=3e-122) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:16210864-16214110 FORWARD LENGTH=465;; (*ITAG) Solyc01g068470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70097312-70107049 transcript_region:SL2.40ch01:70097312..70107049- functional_description:"CM0216.540.nc protein (Fragment) (AHRD V1 ***- B0BL99_LOTJA)"; NbS00034702g0001.1 protein AED:0.19 eAED:0.26 QI:0|0|0|1|1|1|2|0|758; (*GB) gi|225438297|ref|XP_002272395.1| (e_value=7e-34) PREDICTED: uncharacterized protein LOC100247519 [Vitis vinifera];; (*TAIR) AT2G38800.1 (e_value=1e-27) | Symbols: | Plant calmodulin-binding protein-related | chr2:16216999-16218837 FORWARD LENGTH=612;; (*ITAG) Solyc01g068460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70091158-70094189 transcript_region:SL2.40ch01:70091158..70094189- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *-*- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00000434g0003.1 protein AED:0.21 eAED:0.21 QI:352|1|1|1|0.69|0.78|14|178|425; (*GB) gi|224060076|ref|XP_002300037.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27930.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10369593-10372318 REVERSE LENGTH=425;; (*ITAG) Solyc02g067740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32434528-32439982 transcript_region:SL2.40ch02:32434528..32439982- functional_description:"Genomic DNA chromosome 3 TAC clone K24A2 (AHRD V1 ***- Q9LIJ1_ARATH)"; NbS00053016g0003.1 protein AED:0.49 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|329124578|gb|AEB72135.1| (e_value=2e-47) photosystem II CP43 chlorophyll apoprotein (chloroplast) [Solanum tuberosum];; (*SWP) sp|Q2QD93|PSBC_CUCSA (e_value=9e-49) Photosystem II CP43 chlorophyll apoprotein OS=Cucumis sativus GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=2e-48) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc01g011480.1.1 (e_value=9e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:9384328-9384585 transcript_region:SL2.40ch01:9384328..9384585- go_terms:GO:0016020 functional_description:"Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- B7T461_9ROSI); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like "; GO:0016020 NbS00035721g0017.1 protein AED:0.21 eAED:0.22 QI:0|0.62|0.44|0.88|1|1|9|0|257; (*GB) gi|225442194|ref|XP_002276800.1| (e_value=2e-117) PREDICTED: stomatin-like protein 2 [Vitis vinifera];; (*SWP) sp|Q99JB2|STML2_MOUSE (e_value=6e-67) Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1;; (*TAIR) AT4G27585.1 (e_value=2e-116) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr4:13766984-13769832 REVERSE LENGTH=411;; (*ITAG) Solyc03g080050.2.1 (e_value=3e-136) genomic_reference:SL2.40ch03 gene_region:45473113-45480181 transcript_region:SL2.40ch03:45473113..45480181- go_terms:GO:0005102 functional_description:"Band 7 stomatin family protein (AHRD V1 **-- C1MUP6_MICPS); contains Interpro domain(s) IPR001972 Stomatin "; GO:0005102 NbS00035721g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|6019472|gb|AAD02545.2| (e_value=9e-13) PGPS/D3 [Petunia x hybrida]; NbS00035721g0006.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|224132588|ref|XP_002321359.1| (e_value=4e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g073040.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41391155-41391522 transcript_region:SL2.40ch06:41391155..41391522- functional_description:"Unknown Protein (AHRD V1)"; NbS00035721g0019.1 protein AED:0.16 eAED:0.16 QI:414|0.83|0.42|1|0.66|0.71|7|0|651; (*GB) gi|21358787|gb|AAM47025.1| (e_value=0.0) nam-like protein 1 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-47) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G49530.1 (e_value=8e-81) | Symbols: ANAC062, NTL6, NAC062 | NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469;; (*ITAG) Solyc06g073050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00035721g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0.5|2|527|127; (*GB) gi|297821082|ref|XP_002878424.1| (e_value=4e-24) serine protease inhibitor, Kazal-type family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G61980.1 (e_value=1e-25) | Symbols: | serine protease inhibitor, Kazal-type family protein | chr3:22956344-22956697 REVERSE LENGTH=117;; (*ITAG) Solyc06g073020.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:41386285-41388620 transcript_region:SL2.40ch06:41386285..41388620+ go_terms:GO:0004867 functional_description:"Serine-type endopeptidase inhibitor (AHRD V1 *-** B6TFT9_MAIZE)"; GO:0004867 NbS00035721g0014.1 protein AED:0.24 eAED:0.24 QI:180|1|0.8|1|0.75|0.8|5|0|351; (*GB) gi|255560590|ref|XP_002521309.1| (e_value=4e-170) IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis];; (*SWP) sp|Q7XUA8|ILL5_ORYSJ (e_value=4e-154) IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sativa subsp. japonica GN=ILL5 PE=2 SV=1;; (*TAIR) AT5G54140.1 (e_value=5e-141) | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like 3 | chr5:21965833-21967834 FORWARD LENGTH=428;; (*ITAG) Solyc06g073060.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41401609-41405851 transcript_region:SL2.40ch06:41401609..41405851+ go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 6 (AHRD V1 **** A9PG36_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00044916g0006.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|217; (*ITAG) Solyc10g049780.1.1 (e_value=7e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:42300899-42302219 transcript_region:SL2.40ch10:42300899..42302219+ go_terms:GO:0030528 functional_description:"BHLH transcription factor (AHRD V1 *-** B4FMK3_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00060866g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0.5|0.66|3|0|345; (*GB) gi|350537575|ref|NP_001234555.1| (e_value=1e-144) transcription factor [Solanum lycopersicum];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=5e-58) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G63910.1 (e_value=4e-80) | Symbols: AtMYB103, MYB103 | myb domain protein 103 | chr1:23719968-23721625 REVERSE LENGTH=370;; (*ITAG) Solyc08g081500.1.1 (e_value=2e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61702255-61705091 transcript_region:SL2.40ch08:61702255..61705091- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9SRB0_ARATH); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00018655g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|343424521|gb|AEM24937.1| (e_value=9e-28) thionin-like protein [Nicotiana tabacum]; NbS00009959g0008.1 protein AED:0.10 eAED:0.10 QI:255|1|1|1|0.5|0.71|7|29|420; (*GB) gi|325516250|gb|ADZ24703.1| (e_value=0.0) tyrosine aminotransferase 2 [Solanum pennellii];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=0.0) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=0.0) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59464896-59468538 transcript_region:SL2.40ch07:59464896..59468538- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase-like protein (AHRD V1 **** Q9LVY1_ARATH); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00009959g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.42|0.85|1|1|7|0|284; (*GB) gi|224133450|ref|XP_002328045.1| (e_value=4e-107) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=1e-99) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=1e-100) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053710.2.1 (e_value=2e-149) genomic_reference:SL2.40ch07 gene_region:59459841-59463049 transcript_region:SL2.40ch07:59459841..59463049- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00041646g0002.1 protein AED:0.02 eAED:0.02 QI:34|1|1|1|1|1|3|14|205; (*GB) gi|356546164|ref|XP_003541501.1| (e_value=1e-72) PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max];; (*SWP) sp|Q3E958|SHN3_ARATH (e_value=5e-58) Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1;; (*TAIR) AT5G25390.2 (e_value=4e-59) | Symbols: SHN2 | Integrase-type DNA-binding superfamily protein | chr5:8820637-8821741 FORWARD LENGTH=189;; (*ITAG) Solyc12g009490.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2748974-2752098 transcript_region:SL2.40ch12:2748974..2752098- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 11 (AHRD V1 *-*- ERF76_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018997g0001.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|524; (*GB) gi|224076904|ref|XP_002305042.1| (e_value=5e-134) f-box family protein [Populus trichocarpa];; (*SWP) sp|O49508|FB237_ARATH (e_value=2e-131) F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1;; (*TAIR) AT4G18380.2 (e_value=1e-132) | Symbols: | F-box family protein | chr4:10157957-10159099 FORWARD LENGTH=380;; (*ITAG) Solyc08g048430.2.1 (e_value=3e-84) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019214g0001.1 protein AED:0.09 eAED:0.09 QI:531|1|0.5|1|0|0|2|0|639; (*GB) gi|225424995|ref|XP_002267025.1| (e_value=0.0) PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=0.0) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G03890.1 (e_value=0.0) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650;; (*ITAG) Solyc04g005270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:196342-198264 transcript_region:SL2.40ch04:196342..198264- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00035053g0005.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|232; (*GB) gi|225430575|ref|XP_002263122.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100263835 [Vitis vinifera];; (*TAIR) AT4G25760.1 (e_value=3e-24) | Symbols: ATGDU2, GDU2 | glutamine dumper 2 | chr4:13116149-13116538 FORWARD LENGTH=129;; (*ITAG) Solyc12g096480.1.1 (e_value=3e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:63723254-63723712 transcript_region:SL2.40ch12:63723254..63723712- functional_description:"GDU1 (AHRD V1 ***- B6TY22_MAIZE)"; NbS00008249g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|113205400|gb|AAU90303.2| (e_value=4e-32) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc00g027120.1.1 (e_value=3e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00008249g0005.1 protein AED:0.41 eAED:0.45 QI:137|0.5|0.45|1|0.9|0.90|11|0|264; (*GB) gi|359473271|ref|XP_002277155.2| (e_value=5e-85) PREDICTED: uncharacterized protein LOC100246806 [Vitis vinifera];; (*TAIR) AT1G27000.1 (e_value=2e-69) | Symbols: | Protein of unknown function (DUF1664) | chr1:9374068-9376422 FORWARD LENGTH=304;; (*ITAG) Solyc08g005230.2.1 (e_value=2e-126) genomic_reference:SL2.40ch08 gene_region:144167-150496 transcript_region:SL2.40ch08:144167..150496+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00008249g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|4|0|273; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=8e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00013782g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|78191424|gb|ABB29933.1| (e_value=4e-64) P0 ribosomal protein-like [Solanum tuberosum];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=7e-63) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G09200.1 (e_value=6e-63) | Symbols: | Ribosomal protein L10 family protein | chr3:2823364-2825020 REVERSE LENGTH=320;; (*ITAG) Solyc05g054580.2.1 (e_value=3e-67) genomic_reference:SL2.40ch05 gene_region:63611603-63614235 transcript_region:SL2.40ch05:63611603..63614235- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7L9V8_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00052938g0001.1 protein AED:0.21 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|187 NbS00006461g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.91|0.76|0.92|0.75|0.69|13|591|990; (*GB) gi|297736278|emb|CBI24916.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O08550|MLL4_MOUSE (e_value=3e-27) Histone-lysine N-methyltransferase MLL4 OS=Mus musculus GN=Wbp7 PE=1 SV=3;; (*TAIR) AT3G08020.1 (e_value=0.0) | Symbols: | PHD finger family protein | chr3:2557753-2561534 REVERSE LENGTH=779;; (*ITAG) Solyc01g087430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74153504-74164827 transcript_region:SL2.40ch01:74153504..74164827- go_terms:GO:0008270 functional_description:"PHD zinc finger-containing protein (AHRD V1 *--- D3BN85_POLPA); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00036422g0001.1 protein AED:0.26 eAED:0.29 QI:1076|0.57|0.75|1|1|1|8|0|344; (*GB) gi|253971055|gb|ACT37362.1| (e_value=0.0) ankyrin repeat-rich protein [Nicotiana benthamiana];; (*SWP) sp|Q6KAE5|XB32_ORYSJ (e_value=1e-150) Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2;; (*TAIR) AT5G57740.1 (e_value=1e-148) | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis thaliana | chr5:23394789-23397145 REVERSE LENGTH=508;; (*ITAG) Solyc07g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1166641-1172812 transcript_region:SL2.40ch07:1166641..1172812- go_terms:GO:0042803 functional_description:"Ankyrin repeat-rich protein (AHRD V1 **-- A7L3A0_SOLTU); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00029587g0001.1 protein AED:0.24 eAED:0.28 QI:0|0.45|0.25|0.91|1|1|12|0|401; (*GB) gi|297736363|emb|CBI25086.3| (e_value=3e-165) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZQR4|Y2452_ARATH (e_value=4e-151) DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2;; (*TAIR) AT2G14520.1 (e_value=3e-152) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr2:6182362-6184648 REVERSE LENGTH=423;; (*ITAG) Solyc01g106570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86153651-86159586 transcript_region:SL2.40ch01:86153651..86159586- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_BUCAP); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00029587g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.33|1|1|1|3|0|228; (*GB) gi|297736362|emb|CBI25085.3| (e_value=1e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G33690.1 (e_value=2e-11) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | chr4:16175198-16176137 FORWARD LENGTH=246;; (*ITAG) Solyc01g106560.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:86146665-86150324 transcript_region:SL2.40ch01:86146665..86150324+ functional_description:"AT4g33690/T16L1_180 (Fragment) (AHRD V1 *-*- Q94AD3_ARATH)"; NbS00050426g0003.1 protein AED:0.00 eAED:0.00 QI:68|1|0.66|1|1|1|3|0|186; (*GB) gi|356553792|ref|XP_003545236.1| (e_value=5e-59) PREDICTED: uncharacterized protein LOC100778027 [Glycine max];; (*TAIR) AT2G42975.1 (e_value=3e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873998-17874820 FORWARD LENGTH=187;; (*ITAG) Solyc07g056240.2.1 (e_value=6e-72) genomic_reference:SL2.40ch07 gene_region:61404309-61406623 transcript_region:SL2.40ch07:61404309..61406623- functional_description:"Unknown Protein (AHRD V1)"; NbS00050426g0004.1 protein AED:0.15 eAED:0.15 QI:153|0.5|0.66|1|0|0|3|100|217; (*GB) gi|225446813|ref|XP_002279242.1| (e_value=3e-55) PREDICTED: putative ferric-chelate reductase 1 [Vitis vinifera];; (*TAIR) AT4G18260.1 (e_value=2e-39) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr4:10093524-10097337 REVERSE LENGTH=545;; (*ITAG) Solyc07g056230.2.1 (e_value=9e-97) genomic_reference:SL2.40ch07 gene_region:61402318-61404293 transcript_region:SL2.40ch07:61402318..61404293+ functional_description:"Cytochrome B561-related protein (AHRD V1 **-- Q1H8M6_BETVU); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00013430g0001.1 protein AED:0.15 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|57013991|ref|YP_173463.1| (e_value=1e-43) hypothetical protein NitaMp125 [Nicotiana tabacum]; NbS00013430g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|74; (*GB) gi|57013919|ref|YP_173392.1| (e_value=2e-39) hypothetical protein NitaMp046 [Nicotiana tabacum]; NbS00013430g0010.1 protein AED:0.39 eAED:0.51 QI:0|0|0|1|0|0|4|0|260; (*GB) gi|57013902|ref|YP_173350.1| (e_value=2e-19) NADH dehydrogenase subunit 2 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=4e-14) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=2e-19) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g164580.1.1 (e_value=8e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17840292-17841447 transcript_region:SL2.40ch00:17840292..17841447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013430g0012.1 protein AED:0.56 eAED:0.60 QI:0|0|0|0.75|0|0|4|0|248; (*GB) gi|323435045|ref|YP_004222261.1| (e_value=2e-52) hypothetical protein BevumaM_p022 [Beta vulgaris subsp. maritima];; (*SWP) sp|O05000|NU2M_ARATH (e_value=1e-15) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=1e-16) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc08g029260.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:23684885-23686465 transcript_region:SL2.40ch08:23684885..23686465- functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00013430g0011.1 protein AED:0.45 eAED:0.52 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|57013902|ref|YP_173350.1| (e_value=6e-63) NADH dehydrogenase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P93401|NU2M_OENBE (e_value=2e-51) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=1e-58) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g061540.1.1 (e_value=9e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:27743296-27743634 transcript_region:SL2.40ch03:27743296..27743634+ functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00012688g0004.1 protein AED:0.10 eAED:0.18 QI:0|0|0|1|0|0|5|0|565; (*GB) gi|350540658|ref|NP_001234831.1| (e_value=6e-97) TCP transcription factor 11 [Solanum lycopersicum];; (*SWP) sp|Q9C518|TCP8_ARATH (e_value=3e-45) Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1;; (*TAIR) AT1G58100.1 (e_value=2e-46) | Symbols: | TCP family transcription factor | chr1:21512680-21513885 REVERSE LENGTH=401;; (*ITAG) Solyc01g103780.2.1 (e_value=3e-99) genomic_reference:SL2.40ch01 gene_region:84064508-84066135 transcript_region:SL2.40ch01:84064508..84066135- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00049532g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|296082490|emb|CBI21495.3| (e_value=9e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=5e-43) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc04g072550.1.1 (e_value=5e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00016824g0013.1 protein AED:0.22 eAED:0.22 QI:2|0.25|0.2|0.8|0.5|0.4|5|0|183; (*GB) gi|242044476|ref|XP_002460109.1| (e_value=2e-73) hypothetical protein SORBIDRAFT_02g022890 [Sorghum bicolor];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=9e-69) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=7e-70) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc01g010770.2.1 (e_value=2e-87) genomic_reference:SL2.40ch01 gene_region:5825560-5828696 transcript_region:SL2.40ch01:5825560..5828696- go_terms:GO:0005515 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00016824g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.66|1|0.6|0.66|6|485|428; (*GB) gi|53689728|gb|AAU89742.1| (e_value=0.0) serine/threonine protein kinase-like [Solanum tuberosum];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016824g0007.1 protein AED:0.31 eAED:0.31 QI:93|0.8|0.83|1|1|1|6|0|236; (*GB) gi|161788874|dbj|BAF95071.1| (e_value=1e-156) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42056|VDAC2_SOLTU (e_value=5e-153) Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=1e-111) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc01g010760.2.1 (e_value=6e-152) genomic_reference:SL2.40ch01 gene_region:5821504-5825600 transcript_region:SL2.40ch01:5821504..5825600+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00048985g0005.1 protein AED:0.24 eAED:0.24 QI:305|0.94|0.9|1|0.73|0.8|20|83|787; (*GB) gi|302143104|emb|CBI20399.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L6Y1|UBP14_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1;; (*TAIR) AT3G20630.1 (e_value=0.0) | Symbols: UBP14, TTN6, ATUBP14, PER1 | ubiquitin-specific protease 14 | chr3:7203001-7208340 REVERSE LENGTH=797;; (*ITAG) Solyc07g063650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63283470-63293518 transcript_region:SL2.40ch07:63283470..63293518- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9N564_POPTR); contains Interpro domain(s) IPR016652 Ubiquitinyl hydrolase "; GO:0004843 NbS00019623g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|447; (*GB) gi|3869088|dbj|BAA34348.1| (e_value=0.0) elongation factor-1 alpha [Nicotiana paniculata];; (*SWP) sp|P17786|EF1A_SOLLC (e_value=0.0) Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc06g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:4379727-4382219 transcript_region:SL2.40ch06:4379727..4382219+ go_terms:GO:0051015 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- Q8H9C0_SOLTU); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal IPR000795 Protein synthesis factor, GTP-binding "; GO:0051015 NbS00024620g0006.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|3|0|153; (*GB) gi|217072058|gb|ACJ84389.1| (e_value=2e-100) unknown [Medicago truncatula];; (*SWP) sp|Q9MAS5|VA726_ARATH (e_value=7e-91) Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2;; (*TAIR) AT1G04760.1 (e_value=6e-92) | Symbols: ATVAMP726, VAMP726 | vesicle-associated membrane protein 726 | chr1:1334760-1336070 FORWARD LENGTH=220;; (*ITAG) Solyc02g069150.2.1 (e_value=2e-106) genomic_reference:SL2.40ch02 gene_region:33674501-33679880 transcript_region:SL2.40ch02:33674501..33679880+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00035631g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|225454575|ref|XP_002263732.1| (e_value=3e-57) PREDICTED: uncharacterized protein LOC100249528 [Vitis vinifera];; (*TAIR) AT5G36970.1 (e_value=1e-50) | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248;; (*ITAG) Solyc02g081450.2.1 (e_value=2e-93) genomic_reference:SL2.40ch02 gene_region:39991058-39992343 transcript_region:SL2.40ch02:39991058..39992343- functional_description:"NHL1 (Fragment) (AHRD V1 *--- B0LZI0_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00035631g0006.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|650; (*GB) gi|225466169|ref|XP_002263918.1| (e_value=3e-109) PREDICTED: uncharacterized protein LOC100261489 [Vitis vinifera];; (*TAIR) AT1G65710.1 (e_value=2e-23) | Symbols: | unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1); Has 2241 Blast hits to 1776 proteins in 164 species: Archae - 0; Bacteria - 29; Metazoa - 1759; Fungi - 94; Plants - 93; Viruses - 17; Other Eukaryotes - 249 (source: NCBI BLink). | chr1:24437057-24438424 REVERSE LENGTH=455;; (*ITAG) Solyc02g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39987857-39990616 transcript_region:SL2.40ch02:39987857..39990616+ functional_description:"Os02g0638200 protein (Fragment) (AHRD V1 *-*- Q0DZ92_ORYSJ)"; NbS00026373g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|8|462|607; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=0.0) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZSS6|THD1_ARATH (e_value=0.0) Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=0.0) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00043930g0008.1 protein AED:0.28 eAED:0.29 QI:0|0.83|0.76|1|0.91|0.84|13|0|1233; (*GB) gi|359485817|ref|XP_002269977.2| (e_value=0.0) PREDICTED: histidine kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9C5U2|AHK2_ARATH (e_value=0.0) Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1;; (*TAIR) AT5G35750.1 (e_value=0.0) | Symbols: AHK2, HK2 | histidine kinase 2 | chr5:13911743-13916337 REVERSE LENGTH=1176;; (*ITAG) Solyc07g047770.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56284194-56294427 transcript_region:SL2.40ch07:56284194..56294427- go_terms:GO:0042802,GO:0009884 functional_description:"Histidine kinase 1 (AHRD V1 ***- D9ZHC0_HYPPE); contains Interpro domain(s) IPR006189 CHASE "; GO:0042802,GO:0009884 NbS00014494g0003.1 protein AED:0.30 eAED:0.30 QI:540|0.5|0.33|1|1|1|3|0|156; (*GB) gi|359806825|ref|NP_001241566.1| (e_value=8e-63) uncharacterized protein LOC100818162 [Glycine max];; (*TAIR) AT5G61230.1 (e_value=8e-62) | Symbols: | Ankyrin repeat family protein | chr5:24628254-24628778 FORWARD LENGTH=174;; (*ITAG) Solyc08g005910.2.1 (e_value=2e-87) genomic_reference:SL2.40ch08 gene_region:695142-697652 transcript_region:SL2.40ch08:695142..697652+ go_terms:GO:0008381 functional_description:"Ankyrin repeat domain protein (AHRD V1 *-*- C0R3F1_WOLWR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00007971g0008.1 protein AED:0.13 eAED:0.20 QI:0|0|0|1|0|0|4|0|361; (*ITAG) Solyc07g049380.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56973785-56976016 transcript_region:SL2.40ch07:56973785..56976016- go_terms:GO:0005515 functional_description:"Clathrin assembly protein-like (AHRD V1 *-*- Q8LJJ6_ORYSJ); contains Interpro domain(s) IPR011417 ANTH "; GO:0005515 NbS00059040g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|1|1|2|503|244; (*GB) gi|359486610|ref|XP_002277771.2| (e_value=2e-32) PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera];; (*ITAG) Solyc06g051790.2.1 (e_value=1e-84) genomic_reference:SL2.40ch06 gene_region:31945112-31946322 transcript_region:SL2.40ch06:31945112..31946322+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016835g0003.1 protein AED:0.42 eAED:0.52 QI:74|0|0|0.66|1|0.66|3|0|59 NbS00016835g0001.1 protein AED:0.81 eAED:0.92 QI:0|0|0|0.33|1|1|6|0|178; (*GB) gi|350534510|ref|NP_001234144.1| (e_value=1e-55) molybdenum cofactor sulfurase [Solanum lycopersicum];; (*SWP) sp|Q8LGM7|MOCOS_SOLLC (e_value=4e-57) Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1;; (*TAIR) AT1G16540.1 (e_value=2e-37) | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybdenum cofactor sulfurase (LOS5) (ABA3) | chr1:5659465-5665201 FORWARD LENGTH=819;; (*ITAG) Solyc07g066480.2.1 (e_value=3e-58) genomic_reference:SL2.40ch07 gene_region:65118760-65130514 transcript_region:SL2.40ch07:65118760..65130514- go_terms:GO:0008265 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 **** D3BH81_POLPA); contains Interpro domain(s) IPR005302 Molybdenum cofactor sulfurase, C-terminal "; GO:0008265 NbS00006970g0015.1 protein AED:0.21 eAED:0.23 QI:134|0.28|0.26|1|0.57|0.53|15|0|1215; (*GB) gi|374095611|gb|AEY85033.1| (e_value=0.0) xanthine dehydrogenase [Camellia sinensis];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=0.0) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=0.0) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00006970g0016.1 protein AED:0.26 eAED:0.27 QI:0|0|0.5|1|0|0|2|0|154 NbS00006970g0017.1 protein AED:0.13 eAED:0.34 QI:0|0|0|1|0|0|4|0|306; (*GB) gi|170676236|gb|ACB30357.1| (e_value=4e-98) putative bZIP transcriptional activator [Capsicum annuum];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=2e-38) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=2e-39) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc06g060490.2.1 (e_value=1e-107) genomic_reference:SL2.40ch06 gene_region:34902984-34908825 transcript_region:SL2.40ch06:34902984..34908825- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00043262g0007.1 protein AED:0.06 eAED:0.10 QI:107|1|0.8|1|1|1|5|0|440; (*GB) gi|225429506|ref|XP_002279054.1| (e_value=1e-145) PREDICTED: uncharacterized protein LOC100254187 [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=8e-19) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT2G26180.1 (e_value=1e-113) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416;; (*ITAG) Solyc08g062940.2.1 (e_value=1e-132) genomic_reference:SL2.40ch08 gene_region:49582645-49584764 transcript_region:SL2.40ch08:49582645..49584764+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00043262g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.6|1|1|1|5|184|596; (*GB) gi|329739341|gb|AEB97383.1| (e_value=0.0) MAX1 [Petunia x hybrida];; (*SWP) sp|P47787|THAS_PIG (e_value=3e-54) Thromboxane-A synthase OS=Sus scrofa GN=TBXAS1 PE=2 SV=1;; (*TAIR) AT2G26170.1 (e_value=0.0) | Symbols: CYP711A1, MAX1 | cytochrome P450, family 711, subfamily A, polypeptide 1 | chr2:11140851-11143270 FORWARD LENGTH=522;; (*ITAG) Solyc08g062950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49585014-49587278 transcript_region:SL2.40ch08:49585014..49587278- go_terms:GO:0009055 functional_description:"Cytochrome P450"; GO:0009055 NbS00043262g0009.1 protein AED:0.20 eAED:0.20 QI:134|1|1|1|1|1|2|715|366; (*GB) gi|729774|sp|P41152.1|HSF30_SOLPE (e_value=0.0) RecName: Full=Heat shock factor protein HSF30; AltName: Full=Heat shock transcription factor 30; Short=HSTF 30; AltName: Full=Heat stress transcription factor;; (*SWP) sp|P41152|HSF30_SOLPE (e_value=0.0) Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1;; (*TAIR) AT2G26150.1 (e_value=6e-121) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc08g062960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49589145-49591151 transcript_region:SL2.40ch08:49589145..49591151- go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00011613g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.76|0.72|1|0.70|0.72|18|0|1009; (*GB) gi|359495000|ref|XP_003634896.1| (e_value=0.0) PREDICTED: beta-galactosidase [Vitis vinifera];; (*SWP) sp|A5F5U6|BGAL_VIBC3 (e_value=0.0) Beta-galactosidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=lacZ PE=3 SV=2;; (*TAIR) AT3G54440.3 (e_value=0.0) | Symbols: | glycoside hydrolase family 2 protein | chr3:20148494-20157019 REVERSE LENGTH=1120;; (*ITAG) Solyc08g014480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4483718-4509241 transcript_region:SL2.40ch08:4483718..4509241- go_terms:GO:0005515 functional_description:"Beta Galactosidase-like protein (AHRD V1 ***- Q9M1I3_ARATH); contains Interpro domain(s) IPR006103 Glycoside hydrolase family 2, TIM barrel "; GO:0005515 NbS00011613g0011.1 protein AED:0.31 eAED:0.36 QI:0|0.14|0|0.87|0|0.37|8|0|487; (*GB) gi|359497489|ref|XP_003635537.1| (e_value=4e-104) PREDICTED: LOW QUALITY PROTEIN: heat shock protein STI-like [Vitis vinifera];; (*SWP) sp|Q43468|STIP_SOYBN (e_value=4e-57) Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1;; (*TAIR) AT1G62740.1 (e_value=7e-97) | Symbols: Hop2 | stress-inducible protein, putative | chr1:23231026-23233380 FORWARD LENGTH=571;; (*ITAG) Solyc08g079170.2.1 (e_value=2e-111) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbS00011613g0012.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|356525359|ref|XP_003531292.1| (e_value=2e-21) PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max];; (*TAIR) AT2G43850.1 (e_value=6e-24) | Symbols: | Integrin-linked protein kinase family | chr2:18159517-18161984 REVERSE LENGTH=479;; (*ITAG) Solyc08g014450.2.1 (e_value=2e-34) genomic_reference:SL2.40ch08 gene_region:4408477-4415047 transcript_region:SL2.40ch08:4408477..4415047- go_terms:GO:0005515 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0005515 NbS00054847g0002.1 protein AED:0.25 eAED:0.31 QI:0|0|0|1|0|0|3|0|225; (*GB) gi|225425908|ref|XP_002271612.1| (e_value=9e-22) PREDICTED: vinorine synthase-like [Vitis vinifera];; (*TAIR) AT1G24430.1 (e_value=4e-16) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc07g006680.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1533666-1535024 transcript_region:SL2.40ch07:1533666..1535024+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00054847g0001.1 protein AED:0.41 eAED:0.79 QI:0|0|0|1|0|0|2|0|84; (*ITAG) Solyc07g006670.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1528395-1529780 transcript_region:SL2.40ch07:1528395..1529780+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00054847g0003.1 protein AED:0.44 eAED:0.63 QI:0|0|0|1|0|0|2|0|62; (*ITAG) Solyc07g006670.1.1 (e_value=3e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1528395-1529780 transcript_region:SL2.40ch07:1528395..1529780+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00017808g0013.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|148; (*GB) gi|255585301|ref|XP_002533349.1| (e_value=4e-40) poly(ADP-ribose) glycohydrolase, putative [Ricinus communis];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=6e-41) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.2 (e_value=4e-42) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547;; (*ITAG) Solyc12g017920.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7785524-7801666 transcript_region:SL2.40ch12:7785524..7801666- go_terms:GO:0004649 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-** Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0004649 NbS00017808g0014.1 protein AED:0.21 eAED:0.23 QI:0|0.33|0.28|1|0.83|0.71|7|182|565; (*GB) gi|296084379|emb|CBI24767.3| (e_value=4e-133) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G31890.1 (e_value=4e-79) | Symbols: ATRAP, RAP | RAP | chr2:13557100-13559715 REVERSE LENGTH=671;; (*ITAG) Solyc12g017510.1.1 (e_value=1e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6776593-6780152 transcript_region:SL2.40ch12:6776593..6780152+ functional_description:"Os03g0425000 protein (Fragment) (AHRD V1 ***- Q0DR24_ORYSJ); contains Interpro domain(s) IPR013584 RAP domain "; NbS00017808g0015.1 protein AED:0.24 eAED:0.24 QI:218|0.66|0.5|1|0.33|0.4|10|0|753; (*GB) gi|255543489|ref|XP_002512807.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=0.0) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=0.0) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc12g017910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7757083-7763435 transcript_region:SL2.40ch12:7757083..7763435- go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00017808g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|138; (*GB) gi|153793260|gb|ABS50432.1| (e_value=2e-41) chilling-responsive protein [Nicotiana tabacum];; (*TAIR) AT2G44060.2 (e_value=2e-32) | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325;; (*ITAG) Solyc08g015690.2.1 (e_value=3e-42) genomic_reference:SL2.40ch08 gene_region:5133715-5137445 transcript_region:SL2.40ch08:5133715..5137445- go_terms:GO:0009269 functional_description:"Late-embryogenesis abundant protein 2 (AHRD V1 **-- C6T750_SOYBN); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00017808g0005.1 protein AED:0.49 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|31324528|gb|AAP47579.1| (e_value=7e-34) receptor kinase Lecrk [Gossypium hirsutum];; (*SWP) sp|O80939|LRK41_ARATH (e_value=2e-31) L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana GN=LECRK41 PE=1 SV=1;; (*TAIR) AT2G37710.1 (e_value=1e-32) | Symbols: RLK | receptor lectin kinase | chr2:15814934-15816961 REVERSE LENGTH=675;; (*ITAG) Solyc09g011990.1.1 (e_value=7e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5263825-5265831 transcript_region:SL2.40ch09:5263825..5265831- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00013676g0001.1 protein AED:0.06 eAED:0.08 QI:205|1|0.5|1|0|0|2|0|339; (*ITAG) Solyc03g098490.1.1 (e_value=1e-87) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00058634g0002.1 protein AED:0.13 eAED:0.13 QI:491|1|1|1|0|0|3|215|26 NbS00013631g0006.1 protein AED:0.24 eAED:0.24 QI:94|0.75|0.69|1|0.5|0.61|13|304|685; (*GB) gi|224122002|ref|XP_002318726.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5MAU8|PPA27_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1;; (*TAIR) AT5G50400.1 (e_value=0.0) | Symbols: ATPAP27, PAP27 | purple acid phosphatase 27 | chr5:20523575-20526231 REVERSE LENGTH=611;; (*ITAG) Solyc07g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3500707-3507834 transcript_region:SL2.40ch07:3500707..3507834+ go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00013631g0112.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|472 NbS00013631g0110.1 protein AED:0.23 eAED:0.23 QI:95|0.8|0.83|1|1|1|6|391|448 NbS00013631g0102.1 protein AED:0.18 eAED:0.18 QI:0|0.44|0.3|1|1|1|10|149|470 NbS00013631g0116.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|0.5|1|1|2|98|69 NbS00018389g0004.1 protein AED:0.00 eAED:0.00 QI:258|1|1|1|1|1|2|368|143; (*GB) gi|225445519|ref|XP_002285231.1| (e_value=3e-28) PREDICTED: uncharacterized protein LOC100255957 [Vitis vinifera];; (*ITAG) Solyc07g008280.2.1 (e_value=5e-51) genomic_reference:SL2.40ch07 gene_region:3049990-3051076 transcript_region:SL2.40ch07:3049990..3051076- functional_description:"Unknown Protein (AHRD V1)"; NbS00013351g0004.1 protein AED:0.21 eAED:0.22 QI:12|1|0.88|1|0.82|0.83|18|0|652; (*GB) gi|350535803|ref|NP_001234214.1| (e_value=0.0) phototropin-1 [Solanum lycopersicum];; (*SWP) sp|O48963|PHOT1_ARATH (e_value=0.0) Phototropin-1 OS=Arabidopsis thaliana GN=PHOT1 PE=1 SV=1;; (*TAIR) AT3G45780.2 (e_value=0.0) | Symbols: PHOT1, NPH1, JK224, RPT1 | phototropin 1 | chr3:16818557-16823960 FORWARD LENGTH=996;; (*ITAG) Solyc11g072710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52992096-53001851 transcript_region:SL2.40ch11:52992096..53001851+ go_terms:GO:0000160,GO:0006468,GO:0007165,GO:0006355 functional_description:"Protein kinase (AHRD V1 *-*- Q7DMT0_PEA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0007165,GO:0006355 NbS00001781g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.55|1|1|1|9|0|563; (*GB) gi|356502505|ref|XP_003520059.1| (e_value=2e-135) PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Glycine max];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=3e-85) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT1G49740.1 (e_value=2e-110) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:18407728-18409468 FORWARD LENGTH=359;; (*ITAG) Solyc01g107990.2.1 (e_value=4e-171) genomic_reference:SL2.40ch01 gene_region:87135966-87140638 transcript_region:SL2.40ch01:87135966..87140638- go_terms:GO:0023034,GO:0006629,GO:0055114 functional_description:"MAPprotein kinase-like protein (AHRD V1 **-- Q9LT86_ARATH); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0055114 NbS00001781g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|359486444|ref|XP_003633443.1| (e_value=1e-46) PREDICTED: ABC transporter G family member 16-like [Vitis vinifera];; (*SWP) sp|O80946|AB1G_ARATH (e_value=2e-35) ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1;; (*TAIR) AT2G39350.1 (e_value=2e-36) | Symbols: | ABC-2 type transporter family protein | chr2:16430174-16432396 REVERSE LENGTH=740;; (*ITAG) Solyc05g054890.2.1 (e_value=1e-65) genomic_reference:SL2.40ch05 gene_region:63838739-63841441 transcript_region:SL2.40ch05:63838739..63841441+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 1 (AHRD V1 **** AB1G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00001781g0007.1 protein AED:0.35 eAED:0.41 QI:333|0.4|0.5|1|0.6|0.83|6|0|167; (*GB) gi|115187546|gb|ABI84259.1| (e_value=1e-87) tryptophan synthase alpha chain [Arachis hypogaea];; (*SWP) sp|B0JXU3|TRPA_MICAN (e_value=3e-55) Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1;; (*TAIR) AT4G02610.1 (e_value=6e-83) | Symbols: | Aldolase-type TIM barrel family protein | chr4:1147662-1149217 FORWARD LENGTH=275;; (*ITAG) Solyc01g098550.2.1 (e_value=3e-98) genomic_reference:SL2.40ch01 gene_region:80797121-80803117 transcript_region:SL2.40ch01:80797121..80803117+ go_terms:GO:0008152,GO:0006568 functional_description:"Tryptophan synthase alpha chain (AHRD V1 ***- Q8LA83_ARATH); contains Interpro domain(s) IPR002028 Tryptophan synthase, alpha chain "; GO:0008152,GO:0006568 NbS00008795g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|771; (*GB) gi|225430295|ref|XP_002282684.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Vitis vinifera];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=0.0) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc08g059730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42426759-42429185 transcript_region:SL2.40ch08:42426759..42429185+ go_terms:GO:0030246,GO:0004672 functional_description:"S-receptor kinase -like protein (AHRD V1 **** O49361_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0030246,GO:0004672 NbS00008795g0011.1 protein AED:0.14 eAED:0.16 QI:0|0.25|0.4|1|0.5|0.4|5|0|517; (*GB) gi|147828189|emb|CAN68625.1| (e_value=2e-91) hypothetical protein VITISV_010683 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=9e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc08g059710.2.1 (e_value=3e-175) genomic_reference:SL2.40ch08 gene_region:41993926-41997184 transcript_region:SL2.40ch08:41993926..41997184- functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 *-*- Q9FMC4_ARATH)"; NbS00008795g0010.1 protein AED:0.26 eAED:0.26 QI:190|1|1|1|0.75|0.8|5|811|157; (*GB) gi|255587010|ref|XP_002534097.1| (e_value=7e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01640.2 (e_value=7e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr2:283085-284034 FORWARD LENGTH=156;; (*ITAG) Solyc12g056030.1.1 (e_value=5e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:47353478-47357871 transcript_region:SL2.40ch12:47353478..47357871+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048908g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|213; (*GB) gi|6688529|emb|CAB65169.1| (e_value=7e-101) I-box binding factor [Solanum lycopersicum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-24) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G04760.1 (e_value=4e-71) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1373752-1374529 REVERSE LENGTH=215;; (*ITAG) Solyc11g006720.1.1 (e_value=7e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1335552-1337261 transcript_region:SL2.40ch11:1335552..1337261+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 ***- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00042870g0003.1 protein AED:0.20 eAED:0.32 QI:0|0.25|0.22|0.55|0.25|0.44|9|0|309; (*GB) gi|296088000|emb|CBI35283.3| (e_value=6e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WQQ1|AGD15_ARATH (e_value=2e-30) Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1;; (*TAIR) AT3G17660.1 (e_value=2e-31) | Symbols: AGD15 | ARF-GAP domain 15 | chr3:6037717-6039092 FORWARD LENGTH=232;; (*ITAG) Solyc03g098500.2.1 (e_value=9e-87) genomic_reference:SL2.40ch03 gene_region:54231302-54233918 transcript_region:SL2.40ch03:54231302..54233918- go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00059007g0009.1 protein AED:0.01 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|339; (*GB) gi|21389172|gb|AAM50520.1|AF510214_1 (e_value=4e-116) nam-like protein 17 [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=2e-76) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G18270.2 (e_value=5e-88) | Symbols: ANAC087 | Arabidopsis NAC domain containing protein 87 | chr5:6041241-6042743 REVERSE LENGTH=335;; (*ITAG) Solyc06g069100.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39276715-39281353 transcript_region:SL2.40ch06:39276715..39281353- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00059007g0008.1 protein AED:0.39 eAED:0.39 QI:0|0.71|0.53|0.86|0.78|0.8|15|0|507; (*GB) gi|356546730|ref|XP_003541776.1| (e_value=0.0) PREDICTED: protein spinster homolog 1-like [Glycine max];; (*SWP) sp|Q9FLG8|SPNS2_ARATH (e_value=0.0) Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1;; (*TAIR) AT5G64500.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25780511-25783474 FORWARD LENGTH=484;; (*ITAG) Solyc01g106420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86077595-86088101 transcript_region:SL2.40ch01:86077595..86088101+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 **-- Q39GH8_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbC26171849g0006.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|0|0|2|0|234; (*GB) gi|224146378|ref|XP_002325986.1| (e_value=1e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q90972|RNF13_CHICK (e_value=3e-14) E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1;; (*TAIR) AT1G71980.1 (e_value=7e-65) | Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448;; (*ITAG) Solyc11g019930.1.1 (e_value=3e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9789425-9802526 transcript_region:SL2.40ch11:9789425..9802526- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- B5X4J4_SALSA); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0008270 NbS00041111g0006.1 protein AED:0.01 eAED:0.01 QI:278|1|1|1|0|0.5|2|371|254; (*GB) gi|147802843|emb|CAN75153.1| (e_value=4e-78) hypothetical protein VITISV_035994 [Vitis vinifera];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=2e-66) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT4G24660.1 (e_value=1e-67) | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein 22 | chr4:12724851-12725513 REVERSE LENGTH=220;; (*ITAG) Solyc04g014260.1.1 (e_value=3e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4560854-4561970 transcript_region:SL2.40ch04:4560854..4561970- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00023640g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|1|3|0|278; (*GB) gi|147780310|emb|CAN61437.1| (e_value=8e-82) hypothetical protein VITISV_033770 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=2e-15) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G29230.1 (e_value=4e-56) | Symbols: anac075, NAC075 | NAC domain containing protein 75 | chr4:14410338-14414956 FORWARD LENGTH=498;; (*ITAG) Solyc05g026180.1.1 (e_value=3e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40024726-40030220 transcript_region:SL2.40ch05:40024726..40030220+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H8X7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00023640g0008.1 protein AED:0.30 eAED:0.43 QI:0|0|0.33|1|1|1|3|368|80 NbS00003512g0007.1 protein AED:0.48 eAED:0.50 QI:0|0.25|0.4|0.8|0|0|5|166|142; (*GB) gi|255576145|ref|XP_002528967.1| (e_value=2e-24) Triacylglycerol lipase 2 precursor, putative [Ricinus communis];; (*TAIR) AT1G04985.1 (e_value=2e-22) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1416563-1418291 REVERSE LENGTH=193;; (*ITAG) Solyc07g049470.2.1 (e_value=7e-46) genomic_reference:SL2.40ch07 gene_region:57068099-57075183 transcript_region:SL2.40ch07:57068099..57075183- functional_description:"Unknown Protein (AHRD V1)"; NbS00003512g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|0|537; (*GB) gi|350538127|ref|NP_001233816.1| (e_value=0.0) laccase precursor [Solanum lycopersicum];; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=0.0) Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1;; (*TAIR) AT3G09220.1 (e_value=0.0) | Symbols: LAC7 | laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567;; (*ITAG) Solyc07g049460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57063539-57067729 transcript_region:SL2.40ch07:57063539..57067729+ go_terms:GO:0005515,GO:0004322 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase "; GO:0005515,GO:0004322 NbS00003512g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|0|0|3|0|103 NbS00005550g0014.1 protein AED:0.13 eAED:0.13 QI:0|0|0.25|1|0.33|0|4|0|220; (*GB) gi|224142171|ref|XP_002324432.1| (e_value=1e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVV2|XTH26_ARATH (e_value=5e-82) Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1;; (*TAIR) AT4G28850.1 (e_value=4e-83) | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase 26 | chr4:14244336-14245781 FORWARD LENGTH=292;; (*ITAG) Solyc12g007260.1.1 (e_value=1e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1680869-1682934 transcript_region:SL2.40ch12:1680869..1682934+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00005550g0012.1 protein AED:0.24 eAED:0.37 QI:0|0.16|0.14|1|0.16|0|7|0|372; (*GB) gi|255546399|ref|XP_002514259.1| (e_value=2e-87) Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SVV2|XTH26_ARATH (e_value=5e-80) Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1;; (*TAIR) AT4G28850.1 (e_value=4e-81) | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase 26 | chr4:14244336-14245781 FORWARD LENGTH=292;; (*ITAG) Solyc12g007260.1.1 (e_value=1e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1680869-1682934 transcript_region:SL2.40ch12:1680869..1682934+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00005550g0013.1 protein AED:0.45 eAED:0.56 QI:0|0|0|1|0|0.5|2|0|69; (*ITAG) Solyc12g007250.1.1 (e_value=6e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1676397-1677809 transcript_region:SL2.40ch12:1676397..1677809+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 ***- Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00009018g0006.1 protein AED:0.15 eAED:0.15 QI:170|0.83|0.84|1|0.83|0.92|13|275|537; (*GB) gi|357502907|ref|XP_003621742.1| (e_value=0.0) Sphingosine-1-phosphate lyase [Medicago truncatula];; (*SWP) sp|Q9C509|SGPL_ARATH (e_value=0.0) Sphingosine-1-phosphate lyase OS=Arabidopsis thaliana GN=At1g27980 PE=2 SV=1;; (*TAIR) AT1G27980.1 (e_value=0.0) | Symbols: DPL1, ATDPL1 | dihydrosphingosine phosphate lyase | chr1:9748812-9752618 FORWARD LENGTH=544;; (*ITAG) Solyc05g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12526930-12533509 transcript_region:SL2.40ch05:12526930..12533509+ go_terms:GO:0008117 functional_description:"Sphingosine-1-phosphate lyase (AHRD V1 **-* Q549V9_ARATH); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0008117 NbS00031506g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|133 NbS00032828g0013.1 protein AED:0.36 eAED:0.36 QI:0|0.77|0.7|0.9|1|1|10|0|548; (*GB) gi|356534651|ref|XP_003535866.1| (e_value=0.0) PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Glycine max];; (*SWP) sp|O22229|TRXB3_ARATH (e_value=0.0) NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana GN=NTRC PE=1 SV=2;; (*TAIR) AT2G41680.1 (e_value=0.0) | Symbols: NTRC | NADPH-dependent thioredoxin reductase C | chr2:17376349-17379028 REVERSE LENGTH=529;; (*ITAG) Solyc10g080080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60795723-60801941 transcript_region:SL2.40ch10:60795723..60801941- go_terms:GO:0005737,GO:0045454,GO:0055114 functional_description:"Thioredoxin reductase (AHRD V1 ***- B9H9S9_POPTR); contains Interpro domain(s) IPR005982 Thioredoxin reductase "; GO:0005737,GO:0045454,GO:0055114 NbS00032828g0012.1 protein AED:0.13 eAED:0.13 QI:58|1|1|1|0.71|0.87|8|154|373; (*GB) gi|224086974|ref|XP_002308022.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8R2R6|MTG1_MOUSE (e_value=8e-45) Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2;; (*TAIR) AT2G41670.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17374118-17376177 FORWARD LENGTH=386;; (*ITAG) Solyc10g080070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60791938-60795119 transcript_region:SL2.40ch10:60791938..60795119+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0003924 NbS00032828g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|255585494|ref|XP_002533439.1| (e_value=3e-94) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G41660.1 (e_value=2e-79) | Symbols: MIZ1 | Protein of unknown function, DUF617 | chr2:17367945-17368838 FORWARD LENGTH=297;; (*ITAG) Solyc04g016060.1.1 (e_value=7e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:6734758-6735603 transcript_region:SL2.40ch04:6734758..6735603- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00057285g0005.1 protein AED:0.23 eAED:0.28 QI:0|0|0|0.8|0|0|5|0|373; (*GB) gi|75261541|sp|Q6L3Z7.1|R1B14_SOLDE (e_value=4e-107) RecName: Full=Putative late blight resistance protein homolog R1B-14;; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=1e-108) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=8e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00057285g0006.1 protein AED:0.43 eAED:0.45 QI:0|0|0|0.75|0|0|4|0|152; (*GB) gi|53831173|gb|AAU95269.1| (e_value=3e-31) R1 [Solanum tuberosum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=6e-32) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*ITAG) Solyc05g007350.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00034349g0003.1 protein AED:0.28 eAED:0.28 QI:0|0.57|0.62|0.87|0.42|0.37|8|0|451; (*GB) gi|357494297|ref|XP_003617437.1| (e_value=0.0) hypothetical protein MTR_5g091570 [Medicago truncatula];; (*TAIR) AT1G29820.2 (e_value=2e-164) | Symbols: | Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540;; (*ITAG) Solyc10g007740.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1981130-1985036 transcript_region:SL2.40ch10:1981130..1985036- go_terms:GO:0051103 functional_description:"Mg2+ transporter protein CorA family protein (AHRD V1 *-*- D0D0F5_9RHOB)"; GO:0051103 NbS00020036g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|2|3121|226; (*GB) gi|359496288|ref|XP_002271639.2| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100242640 isoform 2 [Vitis vinifera];; (*TAIR) AT3G26510.4 (e_value=1e-41) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc05g013530.2.1 (e_value=8e-75) genomic_reference:SL2.40ch05 gene_region:6766537-6768182 transcript_region:SL2.40ch05:6766537..6768182+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00010203g0007.1 protein AED:0.11 eAED:0.13 QI:0|0.53|0.37|0.93|0.46|0.43|16|0|1470; (*GB) gi|255564132|ref|XP_002523063.1| (e_value=0.0) multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q7DM58|AB4C_ARATH (e_value=0.0) ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2;; (*TAIR) AT2G47800.1 (e_value=0.0) | Symbols: ATMRP4, EST3, MRP4, ABCC4 | multidrug resistance-associated protein 4 | chr2:19574944-19580383 FORWARD LENGTH=1516;; (*ITAG) Solyc09g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62318647-62327379 transcript_region:SL2.40ch09:62318647..62327379+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GS96_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00006140g0008.1 protein AED:0.17 eAED:0.17 QI:214|0.6|0.5|1|0.6|0.5|6|93|400; (*GB) gi|302142892|emb|CBI20187.3| (e_value=5e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G78810.1 (e_value=2e-26) | Symbols: | unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:29628538-29630510 REVERSE LENGTH=481;; (*ITAG) Solyc10g007340.2.1 (e_value=8e-120) genomic_reference:SL2.40ch10 gene_region:1732868-1739713 transcript_region:SL2.40ch10:1732868..1739713+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006140g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|584; (*GB) gi|350535491|ref|NP_001234709.1| (e_value=0.0) peptide N-glycanase precursor [Solanum lycopersicum];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=0.0) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=0.0) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc10g007330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1729750-1731516 transcript_region:SL2.40ch10:1729750..1731516- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- C0NA72_AJECG)"; NbS00006140g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.25|0.75|0.33|0.25|4|0|285; (*GB) gi|388508040|gb|AFK42086.1| (e_value=7e-148) unknown [Lotus japonicus];; (*SWP) sp|Q93ZB6|DCUP1_ARATH (e_value=4e-144) Uroporphyrinogen decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=At3g14930 PE=2 SV=2;; (*TAIR) AT3G14930.2 (e_value=3e-145) | Symbols: HEME1 | Uroporphyrinogen decarboxylase | chr3:5020675-5022577 FORWARD LENGTH=418;; (*ITAG) Solyc10g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1723048-1727585 transcript_region:SL2.40ch10:1723048..1727585- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** D7L387_ARALY); contains Interpro domain(s) IPR006361 Uroporphyrinogen decarboxylase HemE "; GO:0004853,GO:0042803 NbS00001352g0004.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.5|1|0.5|2|0|67 NbS00001352g0003.1 protein AED:0.23 eAED:0.48 QI:0|0|0|1|0|0|4|0|296; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-49) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00039875g0003.1 protein AED:0.33 eAED:0.33 QI:180|1|1|1|1|1|8|301|264; (*GB) gi|77416943|gb|ABA81867.1| (e_value=3e-137) unknown [Solanum tuberosum];; (*TAIR) AT3G55005.1 (e_value=2e-109) | Symbols: TON1B | tonneau 1b (TON1b) | chr3:20384131-20386193 FORWARD LENGTH=257;; (*ITAG) Solyc04g009550.2.1 (e_value=8e-145) genomic_reference:SL2.40ch04 gene_region:2955891-2960456 transcript_region:SL2.40ch04:2955891..2960456+ go_terms:GO:0005515 functional_description:"FGFR1 oncogene partner (AHRD V1 *--- C1C1K3_9MAXI); contains Interpro domain(s) IPR006594 LisH dimerisation motif "; GO:0005515 NbS00024384g0005.1 protein AED:0.33 eAED:0.42 QI:7|0|0|1|0|0|3|0|148; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00039430g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|0.75|0.77|9|575|490; (*GB) gi|224063038|ref|XP_002300968.1| (e_value=8e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU08|AUXI1_ARATH (e_value=3e-63) Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2;; (*TAIR) AT1G21660.1 (e_value=2e-71) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:7605924-7608835 FORWARD LENGTH=523;; (*ITAG) Solyc06g060090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34386124-34395168 transcript_region:SL2.40ch06:34386124..34395168+ go_terms:GO:0031072 functional_description:"UBA/TS-N domain-containing protein (AHRD V1 *--- C1H097_PARBA); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00035119g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.71|0.85|0.33|0.42|7|580|229; (*GB) gi|255568908|ref|XP_002525424.1| (e_value=9e-128) adenylsulfate kinase, putative [Ricinus communis];; (*SWP) sp|Q43295|KAP1_ARATH (e_value=3e-105) Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1;; (*TAIR) AT3G03900.1 (e_value=4e-122) | Symbols: APK3 | adenosine-5'-phosphosulfate (APS) kinase 3 | chr3:1002975-1004271 REVERSE LENGTH=208;; (*ITAG) Solyc10g080680.1.1 (e_value=1e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61217572-61219659 transcript_region:SL2.40ch10:61217572..61219659- go_terms:GO:0000103 functional_description:"Adenylyl-sulfate kinase (AHRD V1 ***- B9SHF5_RICCO); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0000103 NbS00000516g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|301; (*GB) gi|225430666|ref|XP_002268695.1| (e_value=9e-131) PREDICTED: syntaxin-112 [Vitis vinifera];; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=8e-115) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=6e-116) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc02g085090.1.1 (e_value=7e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42668282-42669181 transcript_region:SL2.40ch02:42668282..42669181+ go_terms:GO:0005515 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005515 NbS00000516g0017.1 protein AED:0.13 eAED:0.13 QI:312|0.5|0.4|1|0.25|0.2|5|0|324; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=4e-158) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=3e-108) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=1e-106) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g062670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28977418-28979852 transcript_region:SL2.40ch02:28977418..28979852+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00000516g0018.1 protein AED:0.08 eAED:0.08 QI:485|0.5|0.57|1|0.5|0.57|7|450|347; (*GB) gi|356496745|ref|XP_003517226.1| (e_value=0.0) PREDICTED: laccase-11-like [Glycine max];; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=0.0) Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1;; (*TAIR) AT5G03260.1 (e_value=0.0) | Symbols: LAC11 | laccase 11 | chr5:777198-779338 REVERSE LENGTH=557;; (*ITAG) Solyc02g062650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28968216-28970551 transcript_region:SL2.40ch02:28968216..28970551- go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00000516g0015.1 protein AED:0.11 eAED:0.11 QI:202|1|1|1|1|1|4|286|331; (*GB) gi|224105381|ref|XP_002313791.1| (e_value=8e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPW3|BH064_ARATH (e_value=3e-53) Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3;; (*TAIR) AT2G18300.2 (e_value=2e-54) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:7953022-7954446 REVERSE LENGTH=337;; (*ITAG) Solyc02g062690.2.1 (e_value=5e-120) genomic_reference:SL2.40ch02 gene_region:28989779-28991338 transcript_region:SL2.40ch02:28989779..28991338- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00000516g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.71|0.75|1|0.71|0.62|8|323|237; (*GB) gi|224134260|ref|XP_002327795.1| (e_value=7e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPW2|APC10_ARATH (e_value=1e-83) Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=1 SV=2;; (*TAIR) AT2G18290.1 (e_value=1e-84) | Symbols: APC10 | anaphase promoting complex 10 | chr2:7948522-7950096 REVERSE LENGTH=192;; (*ITAG) Solyc02g062680.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:28981100-28984579 transcript_region:SL2.40ch02:28981100..28984579- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase-promoting complex subunit 10 family (AHRD V1 ***- D7LBA6_ARALY); contains Interpro domain(s) IPR016901 Anaphase-promoting complex, subunit 10, subgroup "; GO:0005515,GO:0004842 NbS00016682g0006.1 protein AED:0.15 eAED:0.16 QI:117|0.66|0.75|1|1|1|4|788|583; (*GB) gi|359493461|ref|XP_002265921.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249450 [Vitis vinifera];; (*SWP) sp|Q0WP01|PTR9_ARATH (e_value=0.0) Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1;; (*TAIR) AT1G22540.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:7964202-7966222 FORWARD LENGTH=557;; (*ITAG) Solyc06g065020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36931096-36935734 transcript_region:SL2.40ch06:36931096..36935734- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00016682g0005.1 protein AED:0.52 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|184; (*ITAG) Solyc04g072040.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56698853-56699248 transcript_region:SL2.40ch04:56698853..56699248- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00025486g0005.1 protein AED:0.55 eAED:0.56 QI:0|0.5|0|0.8|0.25|0.4|5|0|175; (*GB) gi|225425460|ref|XP_002279240.1| (e_value=7e-54) PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera];; (*TAIR) AT1G67420.2 (e_value=2e-43) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922;; (*ITAG) Solyc12g035500.1.1 (e_value=9e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:25714177-25741519 transcript_region:SL2.40ch12:25714177..25741519+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_XENLA); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00025486g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.85|0.62|1|1|1|8|0|703; (*GB) gi|126567465|dbj|BAF48331.1| (e_value=0.0) putative yellow stripe-like protein [Nicotiana tabacum];; (*SWP) sp|Q2EF88|YSL3_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1;; (*TAIR) AT5G53550.2 (e_value=0.0) | Symbols: YSL3 | YELLOW STRIPE like 3 | chr5:21756081-21758776 FORWARD LENGTH=675;; (*ITAG) Solyc03g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46082668-46086918 transcript_region:SL2.40ch03:46082668..46086918- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00008865g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|68; (*ITAG) Solyc12g088410.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62242882-62244590 transcript_region:SL2.40ch12:62242882..62244590- go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00008865g0005.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|3|0|579; (*GB) gi|297735837|emb|CBI18557.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=2e-167) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=1e-168) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00011086g0008.1 protein AED:0.23 eAED:0.23 QI:165|0.5|0.45|0.90|0.8|0.90|11|0|945; (*GB) gi|147846791|emb|CAN80628.1| (e_value=0.0) hypothetical protein VITISV_032620 [Vitis vinifera];; (*TAIR) AT1G17210.1 (e_value=0.0) | Symbols: ATILP1, ILP1 | IAP-like protein 1 | chr1:5880502-5884657 REVERSE LENGTH=958;; (*ITAG) Solyc07g056030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61252970-61260871 transcript_region:SL2.40ch07:61252970..61260871+ go_terms:GO:0005634 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7KFC8_ARALY); contains Interpro domain(s) IPR012935 Zinc finger, C3HC-like "; GO:0005634 NbS00011086g0101.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|659 NbS00011086g0125.1 protein AED:0.07 eAED:0.07 QI:132|0.90|0.81|1|0.66|0.63|22|0|1179 NbS00011086g0123.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.33|0|0.33|3|0|121 NbS00011086g0104.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69 NbS00011086g0122.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|3|0|195 NbS00011086g0124.1 protein AED:0.21 eAED:0.46 QI:0|0|0|1|0|0|2|0|70 NbS00023645g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|4|0|291; (*GB) gi|255568141|ref|XP_002525046.1| (e_value=1e-132) adenylate kinase 1 chloroplast, putative [Ricinus communis];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=2e-115) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT2G37250.1 (e_value=2e-116) | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:15641991-15643318 FORWARD LENGTH=284;; (*ITAG) Solyc04g049690.2.1 (e_value=1e-148) genomic_reference:SL2.40ch04 gene_region:42201867-42210091 transcript_region:SL2.40ch04:42201867..42210091- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00020270g0003.1 protein AED:0.37 eAED:0.37 QI:356|0.66|1|1|0.33|0.5|4|494|57; (*ITAG) Solyc12g015710.1.1 (e_value=7e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5687873-5695832 transcript_region:SL2.40ch12:5687873..5695832- go_terms:GO:0006355 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 ***- D5H7I5_SALRM); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0006355 NbS00016605g0006.1 protein AED:0.26 eAED:0.26 QI:352|1|1|1|0.88|0.83|18|125|671; (*GB) gi|16417958|gb|AAL18931.1|AF429985_1 (e_value=0.0) arabinosidase ARA-1 [Solanum lycopersicum];; (*SWP) sp|Q9SG80|ASD1_ARATH (e_value=0.0) Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1;; (*TAIR) AT3G10740.1 (e_value=0.0) | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678;; (*ITAG) Solyc10g081120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61584069-61591793 transcript_region:SL2.40ch10:61584069..61591793- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase (AHRD V1 **** Q76LU4_SOLLC); contains Interpro domain(s) IPR017853 Glycoside hydrolase, catalytic core "; GO:0009044,GO:0046556 NbS00038776g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-35) hypothetical protein [Nicotiana tabacum]; NbS00012989g0002.1 protein AED:0.00 eAED:0.00 QI:265|1|0.66|1|0|0|3|297|178; (*GB) gi|255537065|ref|XP_002509599.1| (e_value=2e-89) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT4G12240.1 (e_value=4e-77) | Symbols: | zinc finger (C2H2 type) family protein | chr4:7287895-7288989 FORWARD LENGTH=364; NbS00012989g0003.1 protein AED:0.18 eAED:0.19 QI:598|0.75|0.8|1|0|0.2|5|240|203; (*GB) gi|339717983|gb|AEJ88779.1| (e_value=7e-130) cutin-deficient 1 protein [Solanum lycopersicum];; (*SWP) sp|Q8LB81|GDL79_ARATH (e_value=1e-123) GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1;; (*TAIR) AT5G33370.1 (e_value=8e-125) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602773-12604670 REVERSE LENGTH=366;; (*ITAG) Solyc11g006250.1.1 (e_value=1e-132) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1004368-1006899 transcript_region:SL2.40ch11:1004368..1006899+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00012989g0117.1 protein AED:0.47 eAED:0.47 QI:76|0.33|0.25|0.5|0.66|0.75|4|0|156 NbS00012989g0118.1 protein AED:0.06 eAED:0.06 QI:64|1|0.66|1|0|0|3|0|263 NbS00012989g0119.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.16|1|0.4|0.5|6|0|494 NbS00012989g0102.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|1|4|392|247 NbS00012989g0120.1 protein AED:0.29 eAED:0.29 QI:0|0.82|0.83|0.91|0.65|0.83|24|639|683 NbS00048749g0004.1 protein AED:0.19 eAED:0.19 QI:195|0.88|0.9|1|0.77|0.7|10|167|355; (*GB) gi|225459340|ref|XP_002284201.1| (e_value=1e-151) PREDICTED: trehalose-phosphate phosphatase [Vitis vinifera];; (*SWP) sp|Q8GWG2|TPPH_ARATH (e_value=1e-136) Probable trehalose-phosphate phosphatase H OS=Arabidopsis thaliana GN=TPPH PE=2 SV=1;; (*TAIR) AT4G39770.1 (e_value=9e-138) | Symbols: TPPH | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:18449138-18451218 REVERSE LENGTH=349;; (*ITAG) Solyc04g072920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57502409-57504604 transcript_region:SL2.40ch04:57502409..57504604+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose-6-phosphate phosphatase (AHRD V1 ***- D7KV74_ARALY); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00043181g0003.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|4|682|483; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=0.0) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00028279g0005.1 protein AED:0.26 eAED:0.26 QI:2|0.87|0.88|1|1|0.88|9|0|443; (*GB) gi|255552481|ref|XP_002517284.1| (e_value=3e-156) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G05140.1 (e_value=2e-101) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436;; (*ITAG) Solyc10g080930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61435700-61439911 transcript_region:SL2.40ch10:61435700..61439911- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 *--- TCEA2_HUMAN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00035057g0001.1 protein AED:0.38 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|255572882|ref|XP_002527373.1| (e_value=3e-23) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8L8Q8|Y5486_ARATH (e_value=2e-24) Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1;; (*TAIR) AT5G64816.2 (e_value=2e-25) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25913487-25913879 FORWARD LENGTH=130;; (*ITAG) Solyc04g076260.1.1 (e_value=5e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:58788712-58789098 transcript_region:SL2.40ch04:58788712..58789098+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035057g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|324; (*GB) gi|225459101|ref|XP_002283863.1| (e_value=1e-105) PREDICTED: uncharacterized protein LOC100260770 [Vitis vinifera];; (*SWP) sp|Q9NXW2|DJB12_HUMAN (e_value=3e-12) DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4;; (*TAIR) AT2G01710.1 (e_value=7e-51) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:315836-316771 FORWARD LENGTH=311;; (*ITAG) Solyc04g076270.1.1 (e_value=1e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58789804-58790922 transcript_region:SL2.40ch04:58789804..58790922- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6JZX2_SCHJY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00027941g0002.1 protein AED:0.34 eAED:0.34 QI:108|0.75|0.6|1|0.75|0.6|5|0|64; (*GB) gi|225452674|ref|XP_002276735.1| (e_value=2e-15) PREDICTED: uncharacterized protein ytfP [Vitis vinifera];; (*TAIR) AT5G39940.1 (e_value=2e-15) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990561 FORWARD LENGTH=480;; (*ITAG) Solyc02g067480.2.1 (e_value=3e-20) genomic_reference:SL2.40ch02 gene_region:32248985-32257530 transcript_region:SL2.40ch02:32248985..32257530- go_terms:GO:0050662,GO:0016491 functional_description:"Pyridine nucleotide-disulfide oxidoreductase (AHRD V1 **-* D3I8P7_9BACT); contains Interpro domain(s) IPR004792 HI0933-like protein "; GO:0050662,GO:0016491 NbS00056119g0002.1 protein AED:0.19 eAED:0.19 QI:545|1|1|1|0.33|0.5|4|623|75; (*GB) gi|79331962|ref|NP_001032126.1| (e_value=2e-17) proline-rich family protein [Arabidopsis thaliana];; (*TAIR) AT5G62640.2 (e_value=4e-20) | Symbols: ELF5 | proline-rich family protein | chr5:25149584-25152351 REVERSE LENGTH=514;; (*ITAG) Solyc06g071140.2.1 (e_value=4e-22) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbC25692979g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|255580708|ref|XP_002531176.1| (e_value=3e-54) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT2G41940.1 (e_value=4e-33) | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507556-17508329 FORWARD LENGTH=257;; (*ITAG) Solyc03g058160.2.1 (e_value=2e-42) genomic_reference:SL2.40ch03 gene_region:20451688-20456967 transcript_region:SL2.40ch03:20451688..20456967+ go_terms:GO:0003700 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *-** D8RBD0_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbC25131950g0001.1 protein AED:0.04 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|250; (*GB) gi|42741727|gb|AAS45124.1| (e_value=6e-154) WAK-like kinase [Solanum lycopersicum];; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=2e-126) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT2G23450.1 (e_value=1e-127) | Symbols: | Protein kinase superfamily protein | chr2:9988926-9991244 REVERSE LENGTH=708;; (*ITAG) Solyc02g090110.2.1 (e_value=7e-157) genomic_reference:SL2.40ch02 gene_region:46307613-46313725 transcript_region:SL2.40ch02:46307613..46313725- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00016310g0007.1 protein AED:0.30 eAED:0.41 QI:0|0.75|0.6|1|0.75|0.8|5|303|348; (*GB) gi|8489877|gb|AAF75794.1|AF272710_1 (e_value=2e-91) putative 7-transmembrane G-protein-coupled receptor [Solanum chacoense];; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=3e-17) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT5G65280.1 (e_value=3e-72) | Symbols: GCL1 | GCR2-like 1 | chr5:26086129-26088069 REVERSE LENGTH=433;; (*ITAG) Solyc11g010170.1.1 (e_value=3e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3257971-3262718 transcript_region:SL2.40ch11:3257971..3262718- functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; NbS00016310g0006.1 protein AED:0.25 eAED:0.29 QI:0|0.8|0.83|1|1|1|6|415|168; (*GB) gi|323482812|gb|ADX86829.1| (e_value=3e-109) ubiquitin-conjugating enzyme [Nicotiana tabacum];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=3e-109) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=2e-110) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=3e-111) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00053124g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|136; (*ITAG) Solyc05g005400.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:314348-315762 transcript_region:SL2.40ch05:314348..315762- functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003697g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|147795390|emb|CAN67605.1| (e_value=2e-27) hypothetical protein VITISV_030993 [Vitis vinifera];; (*ITAG) Solyc03g115420.1.1 (e_value=6e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59193429-59194628 transcript_region:SL2.40ch03:59193429..59194628- functional_description:"F-box domain containing protein (AHRD V1 ***- Q2QXK7_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00016948g0019.1 protein AED:0.07 eAED:0.07 QI:168|0.8|0.63|0.90|0.6|0.63|11|0|538; (*GB) gi|255554048|ref|XP_002518064.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=0.0) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G04910.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:1388101-1391074 REVERSE LENGTH=519;; (*ITAG) Solyc05g053720.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62901420-62908425 transcript_region:SL2.40ch05:62901420..62908425- functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00016948g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|83; (*GB) gi|224060445|ref|XP_002300203.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT5G09830.1 (e_value=1e-27) | Symbols: | BolA-like family protein | chr5:3057816-3058769 REVERSE LENGTH=93;; (*ITAG) Solyc11g005360.1.1 (e_value=1e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:291709-295568 transcript_region:SL2.40ch11:291709..295568- functional_description:"BolA-like protein (AHRD V1 ***- B6SIB6_MAIZE); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00016948g0015.1 protein AED:0.38 eAED:0.47 QI:63|0.5|0.66|1|0.5|0.66|3|0|85; (*GB) gi|359493113|ref|XP_003634512.1| (e_value=5e-42) PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2 [Vitis vinifera];; (*SWP) sp|P62311|LSM3_MOUSE (e_value=3e-33) U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2;; (*TAIR) AT1G76860.1 (e_value=1e-40) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98;; (*ITAG) Solyc11g005370.1.1 (e_value=2e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:296498-299974 transcript_region:SL2.40ch11:296498..299974- functional_description:"Small nuclear ribonucleoprotein LsM3 (AHRD V1 **-- D3TPY5_GLOMM); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00016948g0023.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.66|3|0|974; (*GB) gi|224060379|ref|XP_002300170.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4N3|UBP2_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2;; (*TAIR) AT1G04860.1 (e_value=0.0) | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2 | chr1:1369306-1372290 REVERSE LENGTH=961;; (*ITAG) Solyc05g053690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62884728-62888637 transcript_region:SL2.40ch05:62884728..62888637+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9GFW8_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00016948g0017.1 protein AED:0.20 eAED:0.25 QI:39|1|0.66|1|0.5|0|3|0|195; (*GB) gi|255554132|ref|XP_002518106.1| (e_value=2e-79) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q4PSN0|PME29_ARATH (e_value=4e-78) Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1;; (*TAIR) AT3G24130.1 (e_value=3e-79) | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335;; (*ITAG) Solyc05g053680.1.1 (e_value=3e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62878570-62882485 transcript_region:SL2.40ch05:62878570..62882485+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9RWI7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00016948g0022.1 protein AED:0.14 eAED:0.31 QI:0|0.5|0|1|0.5|0.33|3|0|171; (*GB) gi|147814856|emb|CAN63612.1| (e_value=6e-62) hypothetical protein VITISV_032683 [Vitis vinifera];; (*SWP) sp|Q9SV60|XTH2_ARATH (e_value=3e-54) Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1;; (*TAIR) AT4G13090.1 (e_value=3e-55) | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase 2 | chr4:7631535-7632870 REVERSE LENGTH=292;; (*ITAG) Solyc05g053700.1.1 (e_value=5e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62890386-62893341 transcript_region:SL2.40ch05:62890386..62893341+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** D5HRN0_FRAAN); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00016948g0018.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|1|1|4|0|206; (*GB) gi|76573371|gb|ABA46790.1| (e_value=7e-148) 60S ribosomal protein L13a-like protein [Solanum tuberosum];; (*SWP) sp|Q9FKC0|R13A4_ARATH (e_value=2e-135) 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1;; (*TAIR) AT5G48760.2 (e_value=1e-136) | Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206;; (*ITAG) Solyc05g053670.2.1 (e_value=3e-150) genomic_reference:SL2.40ch05 gene_region:62873908-62876249 transcript_region:SL2.40ch05:62873908..62876249+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00016948g0021.1 protein AED:0.40 eAED:0.42 QI:0|0|0.33|1|0|0.33|3|0|182; (*GB) gi|356569076|ref|XP_003552732.1| (e_value=5e-23) PREDICTED: uncharacterized protein LOC100810007 [Glycine max];; (*TAIR) AT5G49210.2 (e_value=6e-21) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19950093-19951464 FORWARD LENGTH=195;; (*ITAG) Solyc05g053730.2.1 (e_value=9e-53) genomic_reference:SL2.40ch05 gene_region:62909468-62913284 transcript_region:SL2.40ch05:62909468..62913284+ functional_description:"Genomic DNA chromosome 5 TAC clone K21P3 (AHRD V1 *-*- Q9FJ19_ARATH)"; NbS00006467g0112.1 protein AED:0.20 eAED:0.20 QI:0|0.94|0.83|1|1|1|18|187|846 NbS00006467g0111.1 protein AED:0.17 eAED:0.53 QI:33|0|0|1|0|0.5|2|0|74 NbS00006467g0113.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|367 NbS00006467g0107.1 protein AED:0.33 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|173 NbS00035639g0004.1 protein AED:0.07 eAED:0.12 QI:0|1|0.6|1|1|1|5|0|278; (*GB) gi|1050840|emb|CAA90282.1| (e_value=3e-129) U1snRNP-specific protein, U1A [Solanum tuberosum];; (*SWP) sp|Q0DKM4|RU1A_ORYSJ (e_value=7e-93) U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1;; (*TAIR) AT2G47580.1 (e_value=5e-93) | Symbols: U1A | spliceosomal protein U1A | chr2:19517229-19518686 FORWARD LENGTH=250;; (*ITAG) Solyc09g075200.2.1 (e_value=3e-132) genomic_reference:SL2.40ch09 gene_region:62470438-62476177 transcript_region:SL2.40ch09:62470438..62476177- go_terms:GO:0005515 functional_description:"U1 small nuclear ribonucleoprotein A (AHRD V1 ***- Q16H40_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00062069g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|88 NbS00025955g0002.1 protein AED:0.00 eAED:0.00 QI:213|1|0.66|1|0|0|3|57|208; (*GB) gi|222822655|gb|ACM68440.1| (e_value=4e-86) stress-associated protein 3 [Solanum lycopersicum];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=4e-72) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=4e-52) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc01g014180.2.1 (e_value=8e-89) genomic_reference:SL2.40ch01 gene_region:11758287-11759264 transcript_region:SL2.40ch01:11758287..11759264- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AHRD V1 ***- SAP8_ORYSJ); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00006139g0003.1 protein AED:0.23 eAED:0.28 QI:0|0.2|0|1|0.2|0.16|6|0|267; (*GB) gi|359497056|ref|XP_002263033.2| (e_value=1e-81) PREDICTED: peroxidase 10-like [Vitis vinifera];; (*SWP) sp|Q9FX85|PER10_ARATH (e_value=5e-67) Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1;; (*TAIR) AT1G49570.1 (e_value=4e-68) | Symbols: | Peroxidase superfamily protein | chr1:18347077-18348712 FORWARD LENGTH=350;; (*ITAG) Solyc02g090470.2.1 (e_value=2e-95) genomic_reference:SL2.40ch02 gene_region:46586424-46587915 transcript_region:SL2.40ch02:46586424..46587915+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q58GF4_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00007269g0001.1 protein AED:0.15 eAED:0.15 QI:596|1|0.85|1|0.76|0.78|14|0|358; (*GB) gi|356567576|ref|XP_003551994.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100811265 [Glycine max];; (*TAIR) AT1G67850.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404;; (*ITAG) Solyc05g013660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6959238-6965258 transcript_region:SL2.40ch05:6959238..6965258- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TJT7_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00012255g0002.1 protein AED:0.24 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|224094628|ref|XP_002310190.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23690.1 (e_value=2e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00006487g0002.1 protein AED:0.43 eAED:0.43 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|211; (*GB) gi|255548624|ref|XP_002515368.1| (e_value=2e-39) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SB80|REM5_ARATH (e_value=2e-28) B3 domain-containing protein REM5 OS=Arabidopsis thaliana GN=REM5 PE=2 SV=1;; (*TAIR) AT4G31640.1 (e_value=1e-29) | Symbols: | transcriptional factor B3 family protein | chr4:15328357-15329658 FORWARD LENGTH=352;; (*ITAG) Solyc08g006220.2.1 (e_value=5e-74) genomic_reference:SL2.40ch08 gene_region:912609-915803 transcript_region:SL2.40ch08:912609..915803+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00011365g0009.1 protein AED:0.15 eAED:0.15 QI:117|0.55|0.6|1|0.33|0.3|10|0|495; (*GB) gi|356547835|ref|XP_003542310.1| (e_value=1e-128) PREDICTED: protein WAX2-like [Glycine max];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=1e-120) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=7e-122) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc07g006300.2.1 (e_value=6e-134) genomic_reference:SL2.40ch07 gene_region:1096789-1105446 transcript_region:SL2.40ch07:1096789..1105446+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00011365g0008.1 protein AED:0.24 eAED:0.24 QI:110|0.66|0.5|0.75|1|1|4|0|196; (*ITAG) Solyc12g010640.1.1 (e_value=4e-56) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3591089-3592637 transcript_region:SL2.40ch12:3591089..3592637+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036419g0008.1 protein AED:0.08 eAED:0.08 QI:128|1|1|1|0.83|1|7|396|223; (*GB) gi|17380185|sp|O82531.1|PSB1_PETHY (e_value=1e-157) RecName: Full=Proteasome subunit beta type-1; AltName: Full=20S proteasome alpha subunit F; AltName: Full=20S proteasome subunit beta-6;; (*SWP) sp|O82531|PSB1_PETHY (e_value=3e-159) Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1;; (*TAIR) AT3G60820.3 (e_value=4e-141) | Symbols: PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:22472038-22473809 REVERSE LENGTH=223;; (*ITAG) Solyc02g084920.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:42548635-42554662 transcript_region:SL2.40ch02:42548635..42554662- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SY64_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00033077g0004.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|0.5|1|3|378|145; (*GB) gi|255581988|ref|XP_002531792.1| (e_value=7e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17010.1 (e_value=1e-54) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9576442-9577627 FORWARD LENGTH=160;; (*ITAG) Solyc06g060920.2.1 (e_value=7e-73) genomic_reference:SL2.40ch06 gene_region:35306623-35311105 transcript_region:SL2.40ch06:35306623..35311105+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009444g0004.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|296089919|emb|CBI39738.3| (e_value=6e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FM67|TI205_ARATH (e_value=1e-77) Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1;; (*TAIR) AT5G55710.1 (e_value=8e-79) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22554995-22555624 REVERSE LENGTH=209;; (*ITAG) Solyc12g015680.1.1 (e_value=2e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5664926-5665519 transcript_region:SL2.40ch12:5664926..5665519+ functional_description:"Ycf60 protein (AHRD V1 **-- Q8DJZ7_THEEB)"; NbS00009444g0022.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.33|0.25|4|0|563; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=7e-76) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=3e-36) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT1G59620.1 (e_value=4e-25) | Symbols: CW9 | Disease resistance protein (CC-NBS-LRR class) family | chr1:21902627-21905527 FORWARD LENGTH=842;; (*ITAG) Solyc12g009460.1.1 (e_value=2e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009444g0005.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|274; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=2e-68) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=2e-56) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=1e-57) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc12g015690.1.1 (e_value=9e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5671093-5671896 transcript_region:SL2.40ch12:5671093..5671896+ functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00009444g0001.1 protein AED:0.22 eAED:0.22 QI:53|-1|0|1|-1|1|1|70|29 NbS00009444g0018.1 protein AED:0.44 eAED:0.60 QI:0|1|0|1|1|1|2|0|56 NbS00009444g0020.1 protein AED:0.04 eAED:0.04 QI:214|1|0.75|1|1|1|4|515|407; (*GB) gi|225461874|ref|XP_002264382.1| (e_value=6e-158) PREDICTED: DNA damage response protein WSS1 [Vitis vinifera];; (*SWP) sp|P38838|WSS1_YEAST (e_value=3e-27) DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1;; (*TAIR) AT1G55915.1 (e_value=6e-140) | Symbols: | zinc ion binding | chr1:20907663-20909429 FORWARD LENGTH=404;; (*ITAG) Solyc12g015660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5655855-5659081 transcript_region:SL2.40ch12:5655855..5659081- go_terms:GO:0005622 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7KN38_ARALY); contains Interpro domain(s) IPR013536 WLM "; GO:0005622 NbS00009444g0024.1 protein AED:0.23 eAED:0.23 QI:52|1|0.5|1|0|0.5|2|0|59 NbS00009444g0026.1 protein AED:0.27 eAED:0.29 QI:0|0.2|0|0.66|0.6|0.66|6|0|285; (*GB) gi|224061226|ref|XP_002300379.1| (e_value=1e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=3e-78) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=2e-79) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc12g015700.1.1 (e_value=4e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5679629-5683436 transcript_region:SL2.40ch12:5679629..5683436- go_terms:GO:0016787 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00009682g0015.1 protein AED:0.25 eAED:0.35 QI:0|0.4|0.33|1|0.6|0.33|6|0|312; (*GB) gi|147834515|emb|CAN72000.1| (e_value=3e-48) hypothetical protein VITISV_032712 [Vitis vinifera];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=7e-44) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=5e-45) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc12g040870.1.1 (e_value=5e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40886048-40887708 transcript_region:SL2.40ch12:40886048..40887708- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 ***- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00009682g0016.1 protein AED:0.19 eAED:0.21 QI:0|0.33|0.5|1|0.66|0.75|4|0|172; (*GB) gi|255586020|ref|XP_002533679.1| (e_value=3e-81) geranylgeranyl transferase type II beta subunit, putative [Ricinus communis];; (*SWP) sp|P53611|PGTB2_HUMAN (e_value=3e-53) Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2;; (*TAIR) AT3G12070.2 (e_value=1e-71) | Symbols: | RAB geranylgeranyl transferase beta subunit 2 | chr3:3845420-3847140 REVERSE LENGTH=317;; (*ITAG) Solyc12g040810.1.1 (e_value=1e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40776063-40779127 transcript_region:SL2.40ch12:40776063..40779127- go_terms:GO:0005515,GO:0004663 functional_description:"Geranylgeranyltransferase type II beta subunit (AHRD V1 **** D3TMI7_GLOMM); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0005515,GO:0004663 NbS00009682g0001.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.25|1|1|4|0|159; (*GB) gi|225431910|ref|XP_002276776.1| (e_value=5e-21) PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=5e-20) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06680.1 (e_value=3e-21) | Symbols: | Ribosomal L29e protein family | chr3:2114402-2114877 REVERSE LENGTH=83;; (*ITAG) Solyc05g053440.2.1 (e_value=3e-22) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbS00008240g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0.33|0.66|1|1|3|78|75 NbS00000802g0012.1 protein AED:0.03 eAED:0.03 QI:0|0.8|0.83|0.83|0.4|0.5|6|0|225; (*GB) gi|255553795|ref|XP_002517938.1| (e_value=2e-106) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20740.1 (e_value=1e-98) | Symbols: | Tetraspanin family protein | chr2:8935788-8937292 FORWARD LENGTH=221;; (*ITAG) Solyc07g054160.2.1 (e_value=8e-139) genomic_reference:SL2.40ch07 gene_region:59843151-59846915 transcript_region:SL2.40ch07:59843151..59846915+ go_terms:GO:0016021 functional_description:"Senescence-associated protein-like (ISS) (AHRD V1 ***- Q00X72_OSTTA); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbC26034551g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|0.88|0.62|0.66|9|0|330; (*GB) gi|224137776|ref|XP_002326437.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=1e-174) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=1e-175) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=3e-177) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00035271g0004.1 protein AED:0.39 eAED:0.39 QI:19|0.8|0.90|1|0.8|0.90|11|0|339; (*GB) gi|357512817|ref|XP_003626697.1| (e_value=5e-143) 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula];; (*SWP) sp|Q5XF59|HIBC4_ARATH (e_value=4e-120) 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1;; (*TAIR) AT3G60510.1 (e_value=3e-121) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr3:22357141-22360003 REVERSE LENGTH=401;; (*ITAG) Solyc01g090700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00003121g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|892; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=0.0) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82651948-82655945 transcript_region:SL2.40ch01:82651948..82655945- go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00003121g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|224124374|ref|XP_002330007.1| (e_value=2e-41) global transcription factor group [Populus trichocarpa];; (*SWP) sp|O82491|SPT16_ARATH (e_value=2e-38) FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1;; (*TAIR) AT4G10710.1 (e_value=1e-39) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc10g006770.2.1 (e_value=5e-43) genomic_reference:SL2.40ch10 gene_region:1218092-1221606 transcript_region:SL2.40ch10:1218092..1221606+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 *-*- D3AWW1_POLPA); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0042393 NbS00030161g0004.1 protein AED:0.06 eAED:0.28 QI:0|1|0|1|1|0.5|2|0|373; (*ITAG) Solyc03g120360.1.1 (e_value=4e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62843471-62850190 transcript_region:SL2.40ch03:62843471..62850190+ functional_description:"Phospholipase like protein (AHRD V1 *--- Q9SZN4_ARATH); contains Interpro domain(s) IPR007942 Phospholipase-like, arabidopsis "; NbS00034011g0003.1 protein AED:0.25 eAED:0.15 QI:129|1|0.5|1|0.33|0.75|4|0|163; (*GB) gi|147773895|emb|CAN69547.1| (e_value=2e-70) hypothetical protein VITISV_005614 [Vitis vinifera];; (*SWP) sp|Q9DB96|NGDN_MOUSE (e_value=4e-27) Neuroguidin OS=Mus musculus GN=Ngdn PE=1 SV=1;; (*TAIR) AT1G07840.3 (e_value=9e-58) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426131 FORWARD LENGTH=279;; (*ITAG) Solyc04g076560.2.1 (e_value=4e-92) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00031564g0001.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|224057190|ref|XP_002299164.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g068620.2.1 (e_value=4e-38) genomic_reference:SL2.40ch06 gene_region:38927892-38929148 transcript_region:SL2.40ch06:38927892..38929148- functional_description:"Unknown Protein (AHRD V1)"; NbS00031564g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|356554415|ref|XP_003545542.1| (e_value=7e-117) PREDICTED: uncharacterized protein LOC100811524 [Glycine max];; (*TAIR) AT2G24530.1 (e_value=9e-100) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc06g068610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38916690-38917952 transcript_region:SL2.40ch06:38916690..38917952+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00031564g0004.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0.33|0.66|0.5|0.33|3|419|116 NbS00027798g0003.1 protein AED:0.02 eAED:0.06 QI:68|1|0.66|1|1|1|3|0|467; (*GB) gi|255541444|ref|XP_002511786.1| (e_value=9e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G00770.1 (e_value=1e-17) | Symbols: | unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes - 46 (source: NCBI BLink). | chr4:331195-333050 FORWARD LENGTH=440;; (*ITAG) Solyc01g091830.2.1 (e_value=7e-154) genomic_reference:SL2.40ch01 gene_region:77142469-77144729 transcript_region:SL2.40ch01:77142469..77144729+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056645g0007.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0.5|2|0|274; (*GB) gi|57014014|ref|YP_173485.1| (e_value=1e-174) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=2e-124) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=2e-125) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=2e-142) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00056645g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|111; (*GB) gi|334184177|ref|NP_178797.2| (e_value=2e-21) 60S ribosomal protein L2 [Arabidopsis thaliana];; (*TAIR) AT2G07715.1 (e_value=4e-24) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:3411180-3412694 FORWARD LENGTH=389;; (*ITAG) Solyc03g043630.1.1 (e_value=7e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11072691-11072858 transcript_region:SL2.40ch03:11072691..11072858- functional_description:"Unknown Protein (AHRD V1)"; NbS00056645g0003.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|0|2|0|114 NbS00029407g0008.1 protein AED:0.15 eAED:0.15 QI:378|1|0.92|1|0.58|0.53|13|7|884; (*GB) gi|225439827|ref|XP_002274246.1| (e_value=0.0) PREDICTED: phosphatidate phosphatase LPIN3-like [Vitis vinifera];; (*SWP) sp|Q99PI5|LPIN2_MOUSE (e_value=1e-68) Phosphatidate phosphatase LPIN2 OS=Mus musculus GN=Lpin2 PE=1 SV=2;; (*TAIR) AT3G09560.3 (e_value=0.0) | Symbols: | Lipin family protein | chr3:2934953-2938673 REVERSE LENGTH=904;; (*ITAG) Solyc09g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:629824-638022 transcript_region:SL2.40ch09:629824..638022- go_terms:GO:0008195 functional_description:"Mg2+-dependent phosphatidate (PA) phosphatase catalyzes the dephosphorylation of PA to yield diacylglycerol and Pi responsible for de novo lipid synthesis homologous to mammalian lipin 1 (AHRD V1 *--* D6VZY7_YEAST); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; GO:0008195 NbS00031539g0007.1 protein AED:0.11 eAED:0.11 QI:1064|0.71|0.87|1|0.57|0.62|8|0|445; (*GB) gi|253971055|gb|ACT37362.1| (e_value=0.0) ankyrin repeat-rich protein [Nicotiana benthamiana];; (*SWP) sp|Q6KAE5|XB32_ORYSJ (e_value=3e-178) Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2;; (*TAIR) AT5G57740.1 (e_value=5e-162) | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis thaliana | chr5:23394789-23397145 REVERSE LENGTH=508;; (*ITAG) Solyc07g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1166641-1172812 transcript_region:SL2.40ch07:1166641..1172812- go_terms:GO:0042803 functional_description:"Ankyrin repeat-rich protein (AHRD V1 **-- A7L3A0_SOLTU); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00031539g0005.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.25|1|1|4|0|182; (*ITAG) Solyc05g041970.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:53520609-53521281 transcript_region:SL2.40ch05:53520609..53521281- functional_description:"Unknown Protein (AHRD V1)"; NbS00033225g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|256|133; (*GB) gi|357464045|ref|XP_003602304.1| (e_value=1e-52) F-box/WD repeat-containing protein [Medicago truncatula];; (*ITAG) Solyc03g082670.2.1 (e_value=6e-78) genomic_reference:SL2.40ch03 gene_region:46119987-46121575 transcript_region:SL2.40ch03:46119987..46121575- functional_description:"F-box family protein-like (AHRD V1 *-*- Q5Z9H2_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033225g0006.1 protein AED:0.05 eAED:0.07 QI:656|0.63|0.5|1|0.90|0.83|12|0|1610; (*GB) gi|183604839|gb|ACC64519.1| (e_value=0.0) neuroblastoma-amplified gene [Nicotiana benthamiana];; (*SWP) sp|A2RRP1|NBAS_HUMAN (e_value=3e-26) Neuroblastoma-amplified sequence OS=Homo sapiens GN=NBAS PE=1 SV=2;; (*TAIR) AT5G24350.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8301537-8310746 FORWARD LENGTH=2376;; (*ITAG) Solyc03g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46122780-46137496 transcript_region:SL2.40ch03:46122780..46137496- functional_description:"Neuroblastoma-amplified protein-like protein (AHRD V1 *-*- D2V0U7_NAEGR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00034110g0003.1 protein AED:0.12 eAED:0.12 QI:327|1|1|1|0.85|0.87|8|382|291; (*GB) gi|240256489|ref|NP_201407.4| (e_value=5e-170) iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana];; (*SWP) sp|P54001|P4HA1_RAT (e_value=5e-34) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT5G66060.1 (e_value=1e-172) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:26419481-26421118 FORWARD LENGTH=289;; (*ITAG) Solyc02g083390.2.1 (e_value=2e-168) genomic_reference:SL2.40ch02 gene_region:41390059-41393728 transcript_region:SL2.40ch02:41390059..41393728+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9FKX6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00034110g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|181 NbS00061597g0006.1 protein AED:0.13 eAED:0.13 QI:282|0.66|0.57|0.71|0.83|0.71|7|0|171; (*GB) gi|359483135|ref|XP_002272047.2| (e_value=1e-52) PREDICTED: tubby-like protein 8-like [Vitis vinifera];; (*SWP) sp|Q9S9M8|TLP8_ARATH (e_value=2e-44) Tubby-like protein 8 OS=Arabidopsis thaliana GN=TULP8 PE=2 SV=1;; (*TAIR) AT1G16070.1 (e_value=2e-45) | Symbols: AtTLP8, TLP8 | tubby like protein 8 | chr1:5511899-5513779 REVERSE LENGTH=397;; (*ITAG) Solyc03g117730.2.1 (e_value=9e-61) genomic_reference:SL2.40ch03 gene_region:60832800-60836089 transcript_region:SL2.40ch03:60832800..60836089- go_terms:GO:0003700 functional_description:"Tubby-like protein 13 (AHRD V1 ***- D2CMM7_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700 NbS00061597g0007.1 protein AED:0.21 eAED:0.21 QI:365|0.66|0.71|1|0.5|0.71|7|0|358; (*GB) gi|225443245|ref|XP_002272159.1| (e_value=2e-133) PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Vitis vinifera];; (*SWP) sp|Q94AN4|AP2L1_ARATH (e_value=7e-88) AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1;; (*TAIR) AT1G79700.2 (e_value=3e-95) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:29990440-29993658 REVERSE LENGTH=313;; (*ITAG) Solyc03g117720.2.1 (e_value=9e-150) genomic_reference:SL2.40ch03 gene_region:60828177-60832436 transcript_region:SL2.40ch03:60828177..60832436+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 ***- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00004295g0087.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0|2|0|157; (*GB) gi|57013878|ref|YP_173352.1| (e_value=1e-53) hypothetical protein NitaMp002 [Nicotiana tabacum]; NbS00004295g0014.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|3|0|325; (*GB) gi|1165118|emb|CAA38535.1| (e_value=0.0) cytochrome oxidase subunit I [Solanum lycopersicum];; (*SWP) sp|P07506|COX1_SOYBN (e_value=1e-168) Cytochrome c oxidase subunit 1 OS=Glycine max GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=3e-166) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=3e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00004295g0050.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|69; (*ITAG) Solyc00g036530.1.1 (e_value=2e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:12957184-12957339 transcript_region:SL2.40ch00:12957184..12957339- functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0030.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|86; (*ITAG) Solyc02g010630.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:4132750-4133091 transcript_region:SL2.40ch02:4132750..4133091- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00004295g0089.1 protein AED:0.18 eAED:0.43 QI:0|0|0.33|0.66|0|0|3|0|87; (*SWP) sp|Q68S06|PSAA_PANGI (e_value=4e-14) Photosystem I P700 chlorophyll a apoprotein A1 OS=Panax ginseng GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=3e-15) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00004295g0048.1 protein AED:0.38 eAED:0.46 QI:0|0|0|1|1|1|2|0|101; (*GB) gi|903839|gb|AAB59332.1| (e_value=7e-26) cytochrome b, partial (mitochondrion) [Oenothera berteroana];; (*SWP) sp|Q94S37|CYB_DAUCA (e_value=8e-26) Cytochrome b OS=Daucus carota GN=MT-CYB PE=3 SV=1;; (*ITAG) ATMG00220.1 (e_value=7e-28) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00004295g0001.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|138; (*ITAG) Solyc00g052540.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13768660-13769331 transcript_region:SL2.40ch00:13768660..13769331- functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0062.1 protein AED:0.60 eAED:0.63 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0044.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.66|1|1|3|0|116 NbS00004295g0029.1 protein AED:0.71 eAED:0.72 QI:0|0|0|0.4|1|1|5|0|204 NbS00004295g0066.1 protein AED:0.70 eAED:0.72 QI:24|0|0|0.33|0.5|0.66|3|444|77; (*GB) gi|13205|emb|CAA34810.1| (e_value=6e-32) unnamed protein product [Oryza sativa Indica Group];; (*SWP) sp|Q07060|ATP9_PETSP (e_value=1e-31) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=3e-26) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00004295g0082.1 protein AED:0.35 eAED:0.74 QI:0|0|0|1|0|0.5|4|0|118; (*ITAG) Solyc11g056470.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43152568-43153965 transcript_region:SL2.40ch11:43152568..43153965+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0060.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|113; (*ITAG) Solyc11g056280.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43083869-43084036 transcript_region:SL2.40ch11:43083869..43084036+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0068.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|245; (*GB) gi|57013964|ref|YP_173436.1| (e_value=9e-64) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00004295g0077.1 protein AED:0.08 eAED:0.33 QI:0|0|0.5|1|0|0|2|0|123; (*GB) gi|57013887|ref|YP_173361.1| (e_value=8e-22) hypothetical protein NitaMp013 [Nicotiana tabacum]; NbS00004295g0053.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|135; (*GB) gi|57013968|ref|YP_173440.1| (e_value=1e-58) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00004295g0072.1 protein AED:0.40 eAED:0.56 QI:0|0|0|1|0|0.16|6|0|436; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=1e-68) Maturase [Medicago truncatula];; (*SWP) sp|P92535|M1010_ARATH (e_value=9e-16) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*ITAG) ATMG01010.1 (e_value=7e-17) | Symbols: ORF118 | Unknown conserved protein | chrM:261105-261461 REVERSE LENGTH=118;; (*ITAG) Solyc11g045430.1.1 (e_value=8e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37811629-37814500 transcript_region:SL2.40ch11:37811629..37814500- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00004295g0064.1 protein AED:0.52 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|57013966|ref|YP_173438.1| (e_value=1e-19) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00004295g0085.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.4|0|0|5|0|318; (*GB) gi|57013915|ref|YP_173388.1| (e_value=7e-87) hypothetical protein NitaMp042 [Nicotiana tabacum];; (*SWP) sp|P09003|MI25_TOBAC (e_value=2e-83) ATP synthase protein MI25 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) ATMG00640.1 (e_value=1e-77) | Symbols: ORF25 | hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 REVERSE LENGTH=192;; (*ITAG) Solyc06g042990.1.1 (e_value=7e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:25424621-25424827 transcript_region:SL2.40ch06:25424621..25424827+ functional_description:"ATPase subunit 4 (Fragment) (AHRD V1 ***- Q5MFF4_AMBTC)"; NbS00004295g0073.1 protein AED:0.43 eAED:0.60 QI:0|0|0|0.75|0|0|4|0|311; (*GB) gi|316995995|dbj|BAD83417.2| (e_value=1e-84) maturase-related protein [Nicotiana tabacum];; (*ITAG) ATMG00520.1 (e_value=7e-71) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=5e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00004295g0083.1 protein AED:0.25 eAED:0.51 QI:0|0|0|1|0|0|3|0|211; (*GB) gi|57013921|ref|YP_173394.1| (e_value=2e-51) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04648|CCBS_OENBE (e_value=2e-44) Probable cytochrome c biosynthesis protein OS=Oenothera berteriana PE=2 SV=3;; (*ITAG) ATMG00830.1 (e_value=4e-44) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00004295g0090.1 protein AED:0.13 eAED:0.48 QI:0|0|0|1|0|0|2|0|188; (*GB) gi|357436159|ref|XP_003588355.1| (e_value=1e-39) Mitochondrial protein, putative [Medicago truncatula];; (*ITAG) Solyc05g009730.1.1 (e_value=3e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:3944084-3944323 transcript_region:SL2.40ch05:3944084..3944323- functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0094.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0|2|0|182; (*GB) gi|57013932|ref|YP_173405.1| (e_value=1e-74) hypothetical protein NitaMp061 [Nicotiana tabacum]; NbS00004295g0071.1 protein AED:0.45 eAED:0.49 QI:0|0|0|1|0|0|3|0|168; (*GB) gi|38426358|gb|AAR20279.1| (e_value=8e-28) maturase [Petroselinum crispum];; (*ITAG) ATMG00520.1 (e_value=5e-26) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc09g056320.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:44208524-44208889 transcript_region:SL2.40ch09:44208524..44208889+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0091.1 protein AED:0.45 eAED:0.55 QI:0|0|0|1|0|0|3|0|167; (*GB) gi|57013900|ref|YP_173374.1| (e_value=1e-43) hypothetical protein NitaMp027 [Nicotiana tabacum];; (*SWP) sp|P93276|M030_ARATH (e_value=2e-14) Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1;; (*ITAG) ATMG00030.1 (e_value=2e-15) | Symbols: ORF107A | hypothetical protein | chrM:11918-12241 FORWARD LENGTH=107;; (*ITAG) Solyc10g048060.1.1 (e_value=4e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:39359054-39359497 transcript_region:SL2.40ch10:39359054..39359497- functional_description:"Uncharacterized mitochondrial protein AtMg00030 (AHRD V1 *-*- M030_ARATH)"; NbS00004295g0075.1 protein AED:0.78 eAED:0.86 QI:0|0|0|0.4|0|0|5|0|148 NbS00004295g0098.1 protein AED:0.30 eAED:0.53 QI:0|0|0|1|0|0|2|0|144; (*ITAG) Solyc07g019500.2.1 (e_value=8e-23) genomic_reference:SL2.40ch07 gene_region:11851886-11852770 transcript_region:SL2.40ch07:11851886..11852770+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0079.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.5|0|0|2|0|139; (*GB) gi|57013888|ref|YP_173362.1| (e_value=1e-62) ATP synthase F0 subunit 6 [Nicotiana tabacum];; (*SWP) sp|P05499|ATP6_TOBAC (e_value=3e-64) ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1;; (*ITAG) ATMG01170.1 (e_value=2e-48) | Symbols: ATP6-2 | ATPase, F0 complex, subunit A protein | chrM:296820-297869 REVERSE LENGTH=349;; (*ITAG) Solyc11g056450.1.1 (e_value=4e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43147384-43148622 transcript_region:SL2.40ch11:43147384..43148622- go_terms:GO:0045263 functional_description:"ATP synthase subunit a (AHRD V1 ***- Q9TGX4_SOLTU); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0045263 NbS00004295g0084.1 protein AED:0.40 eAED:0.76 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|57013917|ref|YP_173390.1| (e_value=3e-21) hypothetical protein NitaMp044 [Nicotiana tabacum]; NbS00004295g0096.1 protein AED:0.14 eAED:0.42 QI:0|0|0|1|0|0|3|0|130; (*ITAG) Solyc00g030100.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12579504-12579677 transcript_region:SL2.40ch00:12579504..12579677+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0074.1 protein AED:0.48 eAED:0.83 QI:0|0|0|1|0|0|3|0|123; (*ITAG) Solyc00g094550.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15541769-15542002 transcript_region:SL2.40ch00:15541769..15542002- functional_description:"Unknown Protein (AHRD V1)"; NbS00004295g0093.1 protein AED:0.42 eAED:0.62 QI:0|0|0|1|0|0|3|0|103; (*GB) gi|340842631|gb|AEK78264.1| (e_value=3e-18) hypothetical chloroplast RF2 [Portulaca oleracea];; (*SWP) sp|P08973|YCF2_SPIOL (e_value=1e-18) Protein ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=1e-18) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc10g018990.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:11123485-11124374 transcript_region:SL2.40ch10:11123485..11124374+ go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00004295g0076.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0|0|2|0|92; (*GB) gi|57013891|ref|YP_173365.1| (e_value=4e-48) hypothetical protein NitaMp017 [Nicotiana tabacum]; NbS00004295g0092.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|68; (*GB) gi|108773172|ref|YP_635682.1| (e_value=3e-30) Ycf2 [Solanum tuberosum];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=1e-31) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-29) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=6e-33) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00004295g0088.1 protein AED:0.27 eAED:1.00 QI:32|0|0|1|0|0|3|199|29 NbS00004295g0078.1 protein AED:0.35 eAED:1.00 QI:33|0|0|1|0|0|2|168|20 NbS00004800g0001.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|225429088|ref|XP_002269031.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100258411 [Vitis vinifera];; (*TAIR) AT1G53190.2 (e_value=5e-17) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc10g007140.2.1 (e_value=4e-19) genomic_reference:SL2.40ch10 gene_region:1543949-1548850 transcript_region:SL2.40ch10:1543949..1548850+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004800g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.42|0.85|0.83|0.71|7|0|410; (*GB) gi|162312077|gb|ABX84141.1| (e_value=0.0) rubisco activase [Ipomoea batatas];; (*SWP) sp|Q40565|RCA2_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1;; (*TAIR) AT2G39730.2 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446;; (*ITAG) Solyc09g011080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4413327-4416467 transcript_region:SL2.40ch09:4413327..4416467- go_terms:GO:0046863 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0046863 NbS00010946g0001.1 protein AED:0.07 eAED:0.07 QI:174|1|1|1|0.5|0.2|5|272|111; (*GB) gi|12585429|sp|O82703.1|VATG2_TOBAC (e_value=3e-54) RecName: Full=V-type proton ATPase subunit G 2; Short=V-ATPase subunit G 2; AltName: Full=Vacuolar proton pump subunit G 2;; (*SWP) sp|O82703|VATG2_TOBAC (e_value=1e-55) V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1;; (*TAIR) AT3G01390.2 (e_value=2e-34) | Symbols: VMA10, AVMA10 | vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110;; (*ITAG) Solyc05g056020.2.1 (e_value=3e-52) genomic_reference:SL2.40ch05 gene_region:64553061-64555134 transcript_region:SL2.40ch05:64553061..64555134+ go_terms:GO:0008553 functional_description:"V-type proton ATPase subunit G 2 (AHRD V1 **** VATG2_TOBAC); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0008553 NbS00031800g0006.1 protein AED:0.01 eAED:0.01 QI:79|1|1|1|0|0.5|2|203|463; (*GB) gi|225452384|ref|XP_002273595.1| (e_value=0.0) PREDICTED: high affinity nitrate transporter 2.5-like [Vitis vinifera];; (*SWP) sp|Q9LYK2|NRT27_ARATH (e_value=0.0) High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1;; (*TAIR) AT5G14570.1 (e_value=0.0) | Symbols: ATNRT2.7, NRT2.7 | high affinity nitrate transporter 2.7 | chr5:4695331-4696890 REVERSE LENGTH=493;; (*ITAG) Solyc02g067790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32478085-32481229 transcript_region:SL2.40ch02:32478085..32481229+ go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** Q5K409_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00031800g0009.1 protein AED:0.10 eAED:0.13 QI:0|0.37|0.33|0.88|0.37|0.44|9|0|624; (*GB) gi|147765626|emb|CAN69245.1| (e_value=2e-155) hypothetical protein VITISV_038881 [Vitis vinifera];; (*SWP) sp|Q9CAL3|CRK2_ARATH (e_value=5e-111) Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1;; (*TAIR) AT1G70520.1 (e_value=4e-112) | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2 | chr1:26584888-26587334 REVERSE LENGTH=649;; (*ITAG) Solyc02g067780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32472866-32475403 transcript_region:SL2.40ch02:32472866..32475403+ go_terms:GO:0004702,GO:0019199 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702,GO:0019199 NbS00005807g0005.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|1|1|2|0|718; (*GB) gi|225429756|ref|XP_002280486.1| (e_value=0.0) PREDICTED: exocyst complex component 7-like [Vitis vinifera];; (*SWP) sp|O54922|EXOC7_RAT (e_value=4e-13) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT4G31540.1 (e_value=0.0) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc12g055770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47113855-47115825 transcript_region:SL2.40ch12:47113855..47115825- go_terms:GO:0000145 functional_description:"Exocyst complex component EXO70 (AHRD V1 *--- EXO70_YEAST); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00005807g0010.1 protein AED:0.33 eAED:0.34 QI:0|0.62|0.55|0.88|0.75|0.66|9|301|441; (*GB) gi|147863214|emb|CAN78372.1| (e_value=2e-117) hypothetical protein VITISV_006585 [Vitis vinifera];; (*TAIR) AT1G51580.1 (e_value=4e-85) | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621;; (*ITAG) Solyc12g055780.1.1 (e_value=8e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47118782-47122187 transcript_region:SL2.40ch12:47118782..47122187- go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 1 (AHRD V1 ***- Q53SS8_HUMAN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00005807g0011.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0.5|2|0|236; (*GB) gi|147817258|emb|CAN62067.1| (e_value=4e-52) hypothetical protein VITISV_030085 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=9e-18) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=9e-29) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc12g055790.1.1 (e_value=4e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47123140-47130103 transcript_region:SL2.40ch12:47123140..47130103- go_terms:GO:0003723 functional_description:"Heterogeneous nuclear ribonucleoprotein K (AHRD V1 *--- Q6P363_XENTR); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00003646g0001.1 protein AED:0.27 eAED:0.28 QI:0|1|1|1|1|1|4|186|168; (*GB) gi|255574385|ref|XP_002528106.1| (e_value=5e-76) mitochondrial inner membrane protease subunit, putative [Ricinus communis];; (*SWP) sp|Q6AZD4|IMP2L_DANRE (e_value=1e-32) Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1;; (*TAIR) AT3G08980.1 (e_value=1e-62) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr3:2741279-2742375 FORWARD LENGTH=154;; (*ITAG) Solyc09g014510.2.1 (e_value=5e-109) genomic_reference:SL2.40ch09 gene_region:6142067-6145065 transcript_region:SL2.40ch09:6142067..6145065- go_terms:GO:0005515,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 2 (AHRD V1 ***- B6UIG2_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0005515,GO:0004222 NbS00003646g0002.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|114 NbS00016940g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|0|0.5|4|0|227; (*GB) gi|61889383|emb|CAI53895.2| (e_value=3e-129) putative receptor associated protein [Capsicum chinense];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=6e-78) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT1G03070.2 (e_value=4e-131) | Symbols: | Bax inhibitor-1 family protein | chr1:730148-731379 FORWARD LENGTH=247;; (*ITAG) Solyc06g084130.2.1 (e_value=2e-148) genomic_reference:SL2.40ch06 gene_region:45643108-45644440 transcript_region:SL2.40ch06:45643108..45644440+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TZF1_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00014835g0002.1 protein AED:0.32 eAED:0.48 QI:0|0|0|0.5|1|1|4|0|198; (*GB) gi|225438430|ref|XP_002276539.1| (e_value=1e-29) PREDICTED: RING-H2 finger protein ATL80 [Vitis vinifera];; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=1e-30) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=1e-31) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc02g082420.2.1 (e_value=2e-35) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004996g0009.1 protein AED:0.24 eAED:0.24 QI:467|1|1|1|0.4|0.5|6|185|341; (*GB) gi|356538692|ref|XP_003537835.1| (e_value=0.0) PREDICTED: UDP-galactose transporter 2-like [Glycine max];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=2e-169) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT5G42420.1 (e_value=3e-173) | Symbols: | Nucleotide-sugar transporter family protein | chr5:16968819-16970225 FORWARD LENGTH=350;; (*ITAG) Solyc12g095790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63252859-63256413 transcript_region:SL2.40ch12:63252859..63256413- go_terms:GO:0008514 functional_description:"Integral membrane protein like (AHRD V1 **-- B6TQ82_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00004996g0006.1 protein AED:0.25 eAED:0.25 QI:316|0.88|0.9|1|1|1|10|413|391; (*GB) gi|225457731|ref|XP_002278176.1| (e_value=0.0) PREDICTED: chaperone protein dnaJ 10 [Vitis vinifera];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=0.0) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G21080.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:7378822-7382275 REVERSE LENGTH=391;; (*ITAG) Solyc12g095800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63260262-63268516 transcript_region:SL2.40ch12:63260262..63268516- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 ***- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00004996g0010.1 protein AED:0.36 eAED:0.46 QI:0|0|0|0.8|0|0|5|0|217; (*GB) gi|81301547|ref|YP_398844.1| (e_value=1e-46) ATP synthase CF1 alpha subunit [Nicotiana tomentosiformis];; (*SWP) sp|Q33C53|ATPA_NICTO (e_value=3e-48) ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=1e-43) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00017730g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|138; (*GB) gi|3036951|dbj|BAA25394.1| (e_value=5e-78) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27495|CB24_TOBAC (e_value=2e-79) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT2G34430.1 (e_value=2e-73) | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266;; (*ITAG) Solyc03g005780.1.1 (e_value=3e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00017730g0003.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|129 NbS00053747g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|1|1|4|0|478; (*GB) gi|54288757|gb|AAV31754.1| (e_value=0.0) S-adenosyl-L-homocysteine hydrolase [Nicotiana tabacum];; (*SWP) sp|P68173|SAHH_TOBAC (e_value=0.0) Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1;; (*TAIR) AT4G13940.1 (e_value=0.0) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485;; (*ITAG) Solyc09g092390.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66849458-66851791 transcript_region:SL2.40ch09:66849458..66851791+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0004013 NbS00032489g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|328|575; (*GB) gi|359495463|ref|XP_002270292.2| (e_value=0.0) PREDICTED: vacuolar protein 8-like [Vitis vinifera];; (*TAIR) AT1G61350.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:22634099-22635820 FORWARD LENGTH=573;; (*ITAG) Solyc02g079200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38393852-38395582 transcript_region:SL2.40ch02:38393852..38395582+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7KW19_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00032489g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.75|1|0.66|0.5|4|25|628; (*GB) gi|359495481|ref|XP_002271412.2| (e_value=0.0) PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Vitis vinifera];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=0.0) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=0.0) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc02g079190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38380126-38384863 transcript_region:SL2.40ch02:38380126..38384863+ go_terms:GO:0005515 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00039702g0002.1 protein AED:0.35 eAED:0.35 QI:177|0.6|0.83|0.83|0|0.16|6|519|46 NbS00020661g0024.1 protein AED:0.23 eAED:0.24 QI:0|1|0.75|1|1|0.5|4|0|223; (*GB) gi|255585554|ref|XP_002533467.1| (e_value=1e-138) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|P40690|ALKE_BABBO (e_value=4e-45) Aldo-keto reductase (Fragment) OS=Babesia bovis PE=2 SV=1;; (*TAIR) AT1G04420.1 (e_value=1e-126) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc06g053600.2.1 (e_value=7e-160) genomic_reference:SL2.40ch06 gene_region:32897410-32909873 transcript_region:SL2.40ch06:32897410..32909873- go_terms:GO:0050236 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 ***- Q10GW4_ORYSJ); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0050236 NbS00020661g0001.1 protein AED:0.02 eAED:0.02 QI:277|1|1|1|0.8|0.66|6|838|257; (*GB) gi|224112569|ref|XP_002332745.1| (e_value=1e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|O48905|MDHC_MEDSA (e_value=1e-164) Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1;; (*TAIR) AT5G43330.1 (e_value=1e-162) | Symbols: | Lactate/malate dehydrogenase family protein | chr5:17390552-17392449 FORWARD LENGTH=332;; (*ITAG) Solyc09g090140.2.1 (e_value=1e-166) genomic_reference:SL2.40ch09 gene_region:65031288-65034684 transcript_region:SL2.40ch09:65031288..65034684- go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q2PYY8_SOLTU); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00020661g0022.1 protein AED:0.41 eAED:0.44 QI:0|0|0|1|1|0.5|2|0|383; (*GB) gi|147844158|emb|CAN80561.1| (e_value=3e-34) hypothetical protein VITISV_040288 [Vitis vinifera];; (*ITAG) Solyc06g053590.2.1 (e_value=8e-139) genomic_reference:SL2.40ch06 gene_region:32892414-32894769 transcript_region:SL2.40ch06:32892414..32894769+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020661g0023.1 protein AED:0.22 eAED:0.48 QI:0|0.5|0.33|1|1|1|3|0|1616; (*GB) gi|297736092|emb|CBI24130.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A4GSN8|NUA_ARATH (e_value=0.0) Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1;; (*TAIR) AT1G79280.1 (e_value=0.0) | Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093;; (*ITAG) Solyc06g053570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32887882-32891127 transcript_region:SL2.40ch06:32887882..32891127+ functional_description:"Tpr protein (Fragment) (AHRD V1 ***- A4QN67_DANRE)"; NbS00020661g0020.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|181; (*GB) gi|57013939|ref|YP_173412.1| (e_value=2e-81) cytochrome oxidase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P27168|COX2_DAUCA (e_value=3e-79) Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1;; (*ITAG) ATMG00160.1 (e_value=9e-79) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=3e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbS00050888g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|150; (*ITAG) Solyc07g041030.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:48945001-48945339 transcript_region:SL2.40ch07:48945001..48945339- functional_description:"Unknown Protein (AHRD V1)"; NbS00050888g0009.1 protein AED:0.23 eAED:0.31 QI:0|0|0.16|1|0.2|0.5|6|0|623; (*GB) gi|225448966|ref|XP_002273083.1| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 3-like [Vitis vinifera];; (*SWP) sp|Q9CAE3|LDL3_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1;; (*TAIR) AT3G10390.1 (e_value=0.0) | Symbols: FLD | Flavin containing amine oxidoreductase family protein | chr3:3229293-3232345 FORWARD LENGTH=884;; (*ITAG) Solyc11g008320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00050888g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|266; (*GB) gi|240255318|ref|NP_187650.4| (e_value=2e-60) lysine-specific histone demethylase 1 [Arabidopsis thaliana];; (*SWP) sp|Q9CAE3|LDL3_ARATH (e_value=4e-62) Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1;; (*TAIR) AT3G10390.1 (e_value=3e-63) | Symbols: FLD | Flavin containing amine oxidoreductase family protein | chr3:3229293-3232345 FORWARD LENGTH=884;; (*ITAG) Solyc11g008320.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00031008g0003.1 protein AED:0.12 eAED:0.12 QI:23|1|1|1|1|1|6|102|475; (*GB) gi|224114762|ref|XP_002316850.1| (e_value=0.0) Sec61 transport protein [Populus trichocarpa];; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=0.0) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1;; (*TAIR) AT2G34250.2 (e_value=0.0) | Symbols: | SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475;; (*ITAG) Solyc10g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1761545-1765548 transcript_region:SL2.40ch10:1761545..1765548- go_terms:GO:0043022,GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0043022,GO:0015450 NbS00018964g0003.1 protein AED:0.12 eAED:0.12 QI:254|1|1|1|1|1|2|593|208; (*GB) gi|46020014|dbj|BAD13499.1| (e_value=1e-19) dehydrin [Nicotiana tabacum];; (*ITAG) Solyc04g082200.2.1 (e_value=7e-20) genomic_reference:SL2.40ch04 gene_region:63550865-63552237 transcript_region:SL2.40ch04:63550865..63552237- go_terms:GO:0009415 functional_description:"Dehydrin (AHRD V1 *-*- Q1A4H3_COFCA); contains Interpro domain(s) IPR000167 Dehydrin "; GO:0009415 NbS00002398g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.4|1|0.75|0.8|5|0|591; (*GB) gi|359495139|ref|XP_002264394.2| (e_value=0.0) PREDICTED: laccase-14 [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=0.0) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=0.0) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc04g072280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56905173-56909198 transcript_region:SL2.40ch04:56905173..56909198+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00007266g0004.1 protein AED:0.59 eAED:0.59 QI:40|1|0.5|1|0|0|2|0|94 NbS00013032g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.82|0.77|0.94|0.76|0.88|18|0|1313; (*GB) gi|359486090|ref|XP_002273874.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259948 [Vitis vinifera];; (*TAIR) AT4G22970.1 (e_value=2e-126) | Symbols: RSW4, AESP, ESP | homolog of separase | chr4:12033703-12043572 REVERSE LENGTH=2180;; (*ITAG) Solyc01g104490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84706633-84726678 transcript_region:SL2.40ch01:84706633..84726678+ go_terms:GO:0005634,GO:0005622 functional_description:"Separin (AHRD V1 *--- C5JQX2_AJEDS); contains Interpro domain(s) IPR005314 Peptidase C50, separase "; GO:0005634,GO:0005622 NbS00042453g0009.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0|0.66|1|1|3|0|121; (*GB) gi|359806751|ref|NP_001241299.1| (e_value=3e-41) uncharacterized protein LOC100811201 [Glycine max];; (*SWP) sp|O04006|PSAH_BRARA (e_value=3e-38) Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1;; (*TAIR) AT1G52230.1 (e_value=1e-38) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=4e-43) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00050085g0006.1 protein AED:0.36 eAED:0.36 QI:0|0.66|0.57|1|0.66|0.71|7|246|221; (*GB) gi|225453246|ref|XP_002265511.1| (e_value=1e-123) PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=2e-119) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=1e-120) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc01g088510.2.1 (e_value=2e-125) genomic_reference:SL2.40ch01 gene_region:75045390-75049645 transcript_region:SL2.40ch01:75045390..75049645- go_terms:GO:0003924 functional_description:"Dynamin like protein (AHRD V1 ***- D3BTL7_POLPA); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00050085g0005.1 protein AED:0.46 eAED:0.62 QI:0|0|0.33|1|0|0.33|3|0|82; (*GB) gi|255571115|ref|XP_002526508.1| (e_value=5e-15) dynamin, putative [Ricinus communis];; (*TAIR) AT3G60190.1 (e_value=1e-14) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc01g088520.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:75052128-75052500 transcript_region:SL2.40ch01:75052128..75052500- functional_description:"Dynamin-related protein 1A (AHRD V1 ***- B6U4J8_MAIZE)"; NbS00010965g0006.1 protein AED:0.18 eAED:0.20 QI:0|0|0.25|0.75|0|0.25|4|0|326; (*GB) gi|255553847|ref|XP_002517964.1| (e_value=4e-131) Indole-3-acetic acid-amido synthetase GH3.5, putative [Ricinus communis];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=3e-71) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT4G03400.1 (e_value=1e-99) | Symbols: DFL2, GH3-10 | Auxin-responsive GH3 family protein | chr4:1497675-1499729 REVERSE LENGTH=591;; (*ITAG) Solyc10g008520.2.1 (e_value=1e-151) genomic_reference:SL2.40ch10 gene_region:2637742-2643134 transcript_region:SL2.40ch10:2637742..2643134+ go_terms:GO:0080123,GO:0070566 functional_description:"Auxin-responsive GH3-like (AHRD V1 ***- Q0GUM1_ARATH); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00017251g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|167; (*TAIR) AT5G56880.1 (e_value=8e-14) | Symbols: | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23009140-23009619 REVERSE LENGTH=159; NbS00017251g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.83|1|1|1|6|227|674; (*GB) gi|225444918|ref|XP_002279617.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266211 [Vitis vinifera];; (*TAIR) AT3G60310.1 (e_value=1e-96) | Symbols: | unknown protein; Has 22 Blast hits to 18 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22287781-22290379 FORWARD LENGTH=687;; (*ITAG) Solyc07g038100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:42654270-42658210 transcript_region:SL2.40ch07:42654270..42658210+ go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1)"; GO:0016021 NbS00018609g0010.1 protein AED:0.14 eAED:0.14 QI:669|0.61|0.71|0.78|0.46|0.64|14|278|518; (*GB) gi|297734075|emb|CBI15322.3| (e_value=2e-154) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=1e-25) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT1G18610.1 (e_value=3e-130) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:6405779-6408831 FORWARD LENGTH=556;; (*ITAG) Solyc03g114960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58872058-58879501 transcript_region:SL2.40ch03:58872058..58879501+ go_terms:GO:0005515 functional_description:"Kelch-like protein 20 (AHRD V1 *-*- KLH20_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00018609g0009.1 protein AED:0.21 eAED:0.21 QI:139|0.93|0.88|1|1|1|17|0|708; (*GB) gi|359490880|ref|XP_002265694.2| (e_value=0.0) PREDICTED: ABC transporter B family member 25-like [Vitis vinifera];; (*SWP) sp|Q9FNU2|AB25B_ORYSJ (e_value=0.0) ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1;; (*TAIR) AT5G39040.1 (e_value=0.0) | Symbols: ALS1, ATTAP2, TAP2 | transporter associated with antigen processing protein 2 | chr5:15625660-15629621 FORWARD LENGTH=644;; (*ITAG) Solyc03g114950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58864908-58870209 transcript_region:SL2.40ch03:58864908..58870209+ go_terms:GO:0042803 functional_description:"Lipid a export ATP-binding/permease protein msba (AHRD V1 ***- Q17P67_AEDAE); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0042803 NbS00018609g0008.1 protein AED:0.36 eAED:0.36 QI:97|1|1|1|0.5|0.33|3|342|112; (*GB) gi|297734074|emb|CBI15321.3| (e_value=6e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=2e-31) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=1e-32) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc03g114970.2.1 (e_value=4e-53) genomic_reference:SL2.40ch03 gene_region:58886330-58887604 transcript_region:SL2.40ch03:58886330..58887604- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00018070g0010.1 protein AED:0.05 eAED:0.05 QI:785|1|1|1|1|1|5|181|440; (*GB) gi|225446370|ref|XP_002273772.1| (e_value=0.0) PREDICTED: mannan endo-1,4-beta-mannosidase 2-like [Vitis vinifera];; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1;; (*TAIR) AT2G20680.1 (e_value=0.0) | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily protein | chr2:8921024-8923066 FORWARD LENGTH=433;; (*ITAG) Solyc07g053920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59657150-59661028 transcript_region:SL2.40ch07:59657150..59661028- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00018070g0006.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|11465963|ref|NP_054505.1| (e_value=5e-31) ATP synthase CF1 epsilon subunit [Nicotiana tabacum];; (*SWP) sp|P00834|ATPE_TOBAC (e_value=1e-32) ATP synthase epsilon chain, chloroplastic OS=Nicotiana tabacum GN=atpE PE=3 SV=1;; (*ITAG) ATCG00470.1 (e_value=6e-30) | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663 REVERSE LENGTH=132;; (*ITAG) Solyc01g007320.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00022350g0001.1 protein AED:0.01 eAED:0.01 QI:97|0|0.5|1|0|0.5|2|181|132; (*GB) gi|225445158|ref|XP_002284070.1| (e_value=6e-48) PREDICTED: transmembrane protein 234 homolog [Vitis vinifera];; (*TAIR) AT5G19570.1 (e_value=3e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6606739-6607152 FORWARD LENGTH=137;; (*ITAG) Solyc11g006870.1.1 (e_value=1e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1414904-1415302 transcript_region:SL2.40ch11:1414904..1415302- functional_description:"Novel protein similar to H.sapiens C1orf91 chromosome 1 open reading frame 91 (C1orf91) (AHRD V1 **-- B8A4M3_DANRE); contains Interpro domain(s) IPR018908 Uncharacterised protein family UPF0546 "; NbS00029483g0001.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|224085451|ref|XP_002307579.1| (e_value=9e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SY06|FAF1_ARATH (e_value=4e-22) Protein FANTASTIC FOUR 1 OS=Arabidopsis thaliana GN=FAF1 PE=2 SV=1;; (*TAIR) AT4G02810.1 (e_value=3e-23) | Symbols: | Protein of unknown function (DUF3049) | chr4:1256253-1257068 FORWARD LENGTH=271;; (*ITAG) Solyc09g065140.1.1 (e_value=2e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58660863-58661594 transcript_region:SL2.40ch09:58660863..58661594- functional_description:"Unknown Protein (AHRD V1)"; NbS00016508g0002.1 protein AED:0.48 eAED:0.60 QI:86|0|0.33|1|1|1|3|0|79; (*GB) gi|110739205|dbj|BAF01517.1| (e_value=2e-27) tubulin-like protein [Arabidopsis thaliana];; (*TAIR) AT4G37190.1 (e_value=5e-30) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr4:17507155-17509512 FORWARD LENGTH=562;; (*ITAG) Solyc01g100190.2.1 (e_value=9e-33) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00007037g0001.1 protein AED:0.37 eAED:0.44 QI:255|0.37|0.33|1|0.87|0.88|9|0|174; (*GB) gi|728628|emb|CAA88493.1| (e_value=8e-17) TAF-3 [Nicotiana tabacum];; (*ITAG) Solyc05g050220.2.1 (e_value=1e-15) genomic_reference:SL2.40ch05 gene_region:59415665-59420568 transcript_region:SL2.40ch05:59415665..59420568+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00051825g0004.1 protein AED:0.09 eAED:0.09 QI:308|0.71|0.87|1|0.57|0.5|8|123|283; (*GB) gi|255556139|ref|XP_002519104.1| (e_value=6e-106) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|A5PK19|MET13_BOVIN (e_value=6e-17) Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1;; (*TAIR) AT4G34360.1 (e_value=5e-102) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16432011-16433752 FORWARD LENGTH=248;; (*ITAG) Solyc01g109290.2.1 (e_value=3e-138) genomic_reference:SL2.40ch01 gene_region:88044600-88047738 transcript_region:SL2.40ch01:88044600..88047738- go_terms:GO:0016279 functional_description:"Methyltransferase (AHRD V1 **** D0N411_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016279 NbS00035692g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|449; (*GB) gi|359497760|ref|XP_003635632.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=4e-63) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G16490.1 (e_value=1e-176) | Symbols: | ARM repeat superfamily protein | chr4:9293891-9295530 REVERSE LENGTH=472;; (*ITAG) Solyc11g012440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5278466-5280485 transcript_region:SL2.40ch11:5278466..5280485+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00039400g0003.1 protein AED:0.07 eAED:0.07 QI:75|1|0.85|1|1|1|7|121|438; (*GB) gi|2196453|dbj|BAA20425.1| (e_value=0.0) B-type cyclin [Nicotiana tabacum];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=0.0) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT5G06150.1 (e_value=1e-142) | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein | chr5:1859542-1861570 REVERSE LENGTH=445;; (*ITAG) Solyc10g080950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61460663-61463015 transcript_region:SL2.40ch10:61460663..61463015+ go_terms:GO:0005634 functional_description:"Cyclin B-like protein (AHRD V1 ***- Q5U8T5_9SOLA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0005634 NbS00014768g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.87|0.66|1|0.62|0.55|9|0|392; (*GB) gi|302143624|emb|CBI22377.3| (e_value=2e-142) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ESJ0|XPO4_MOUSE (e_value=1e-18) Exportin-4 OS=Mus musculus GN=Xpo4 PE=1 SV=2;; (*TAIR) AT3G04490.1 (e_value=1e-96) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:1200816-1209713 FORWARD LENGTH=1118;; (*ITAG) Solyc12g027580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:18008699-18019027 transcript_region:SL2.40ch12:18008699..18019027- functional_description:"Exportin 4 (AHRD V1 ***- Q0VG75_HUMAN)"; NbS00014768g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0.77|1|1|1|9|0|358; (*GB) gi|359488084|ref|XP_002266608.2| (e_value=7e-142) PREDICTED: exportin-4-like [Vitis vinifera];; (*TAIR) AT3G04490.1 (e_value=3e-115) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:1200816-1209713 FORWARD LENGTH=1118;; (*ITAG) Solyc12g027590.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:18031699-18043710 transcript_region:SL2.40ch12:18031699..18043710- functional_description:"Exportin 4 (AHRD V1 ***- B0S8I3_DANRE)"; NbS00014768g0015.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.33|0.5|1|1|6|0|234; (*GB) gi|359488084|ref|XP_002266608.2| (e_value=7e-90) PREDICTED: exportin-4-like [Vitis vinifera];; (*SWP) sp|Q802D3|XPO4_DANRE (e_value=6e-13) Exportin-4 OS=Danio rerio GN=xpo4 PE=2 SV=1;; (*TAIR) AT3G04490.1 (e_value=2e-88) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38092.1); Has 75 Blast hits to 64 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:1200816-1209713 FORWARD LENGTH=1118;; (*ITAG) Solyc12g027600.1.1 (e_value=2e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:18056736-18058431 transcript_region:SL2.40ch12:18056736..18058431- functional_description:"Nuclear transport receptor exportin 4 (Importin beta superfamily) (ISS) (Fragment) (AHRD V1 *-*- Q00UW3_OSTTA)"; NbS00035154g0005.1 protein AED:0.11 eAED:0.11 QI:402|1|0.5|1|1|1|2|0|345; (*GB) gi|350539725|ref|NP_001234767.1| (e_value=0.0) putative GID1-like gibberellin receptor [Solanum lycopersicum];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc09g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61555421-61557248 transcript_region:SL2.40ch09:61555421..61557248- go_terms:GO:0005515 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECO81); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00010789g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.57|0.5|0.75|1|1|8|0|450; (*GB) gi|255561987|ref|XP_002522002.1| (e_value=0.0) metalloprotease m41 ftsh, putative [Ricinus communis];; (*SWP) sp|A9NE17|FTSH_ACHLI (e_value=2e-28) ATP-dependent zinc metalloprotease FtsH OS=Acholeplasma laidlawii (strain PG-8A) GN=ftsH PE=3 SV=1;; (*TAIR) AT3G04340.1 (e_value=0.0) | Symbols: emb2458 | FtsH extracellular protease family | chr3:1146943-1153341 REVERSE LENGTH=1320;; (*ITAG) Solyc02g032960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20240323-20261625 transcript_region:SL2.40ch02:20240323..20261625+ go_terms:GO:0016887 functional_description:"Cell division protease FtsH homolog (AHRD V1 *--- C5NVJ0_9BACL); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00012583g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|224105787|ref|XP_002313932.1| (e_value=2e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|P04284|PR06_SOLLC (e_value=2e-70) Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2;; (*TAIR) AT1G50060.1 (e_value=1e-66) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr1:18551186-18552446 FORWARD LENGTH=161;; (*ITAG) Solyc01g106640.2.1 (e_value=5e-91) genomic_reference:SL2.40ch01 gene_region:86193786-86194388 transcript_region:SL2.40ch01:86193786..86194388+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1 (AHRD V1 ***- D2XZ57_9ROSI); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005515 NbS00012583g0006.1 protein AED:0.03 eAED:0.03 QI:21|0.66|0.75|1|0.66|0.75|4|299|287; (*GB) gi|225429141|ref|XP_002270633.1| (e_value=4e-155) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10 [Vitis vinifera];; (*SWP) sp|Q9ZVK1|XTH10_ARATH (e_value=5e-139) Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1;; (*TAIR) AT2G14620.1 (e_value=3e-140) | Symbols: XTH10 | xyloglucan endotransglucosylase/hydrolase 10 | chr2:6244889-6246010 FORWARD LENGTH=299;; (*ITAG) Solyc01g106650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86194907-86196328 transcript_region:SL2.40ch01:86194907..86196328- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 6 (AHRD V1 **** C0IRG5_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00059034g0004.1 protein AED:0.04 eAED:0.14 QI:0|0|0|1|1|1|3|0|200; (*GB) gi|319433441|gb|ADV57638.1| (e_value=2e-25) copper binding protein 3 [Gossypium hirsutum];; (*SWP) sp|Q41001|BCP_PEA (e_value=2e-18) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G60280.1 (e_value=3e-22) | Symbols: UCC3 | uclacyanin 3 | chr3:22279867-22280633 REVERSE LENGTH=222;; (*ITAG) Solyc01g090120.2.1 (e_value=5e-76) genomic_reference:SL2.40ch01 gene_region:75523181-75524585 transcript_region:SL2.40ch01:75523181..75524585- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6UB13_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbC24346930g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|0|0|2|0|67; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=1e-38) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=7e-40) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc11g044320.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35412464-35418671 transcript_region:SL2.40ch11:35412464..35418671- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone (AHRD V1 ***- B9HN09_POPTR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0005634,GO:0003677,GO:0045449 NbS00003137g0006.1 protein AED:0.41 eAED:0.62 QI:0|0.5|0|0.66|0.5|0.66|3|0|621; (*GB) gi|224091306|ref|XP_002309221.1| (e_value=3e-121) predicted protein [Populus trichocarpa];; (*TAIR) AT5G56780.1 (e_value=4e-78) | Symbols: ATET2, ET2 | effector of transcription2 | chr5:22964384-22966241 REVERSE LENGTH=483;; (*ITAG) Solyc07g021550.2.1 (e_value=5e-171) genomic_reference:SL2.40ch07 gene_region:19453609-19456445 transcript_region:SL2.40ch07:19453609..19456445+ functional_description:"Transcripteion factor (Fragment) (AHRD V1 ***- O04239_VICFA)"; NbS00003137g0108.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0|0.33|3|236|151 NbS00003137g0111.1 protein AED:0.12 eAED:0.15 QI:332|0.75|0.66|1|0.75|0.55|9|0|1153 NbS00059799g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|225458358|ref|XP_002281733.1| (e_value=2e-92) PREDICTED: peroxisomal membrane protein 11A [Vitis vinifera];; (*SWP) sp|Q9FZF1|PX11A_ARATH (e_value=1e-85) Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1;; (*TAIR) AT1G47750.1 (e_value=8e-87) | Symbols: PEX11A | peroxin 11A | chr1:17569388-17570134 REVERSE LENGTH=248;; (*ITAG) Solyc04g080000.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61896501-61897271 transcript_region:SL2.40ch04:61896501..61897271+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-3 (AHRD V1 ***- PX113_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00016450g0009.1 protein AED:0.16 eAED:0.22 QI:0|0|0|1|0|0.33|3|0|163; (*ITAG) Solyc10g076970.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59236244-59239086 transcript_region:SL2.40ch10:59236244..59239086+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00014569g0004.1 protein AED:0.03 eAED:0.03 QI:406|0.5|0.66|1|0.5|0.66|3|556|175; (*GB) gi|47558817|gb|AAT35532.1| (e_value=7e-101) CAPIP1 [Capsicum annuum];; (*SWP) sp|Q9FGM1|PYL8_ARATH (e_value=2e-87) Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1;; (*TAIR) AT5G53160.2 (e_value=1e-88) | Symbols: RCAR3, PYL8 | regulatory components of ABA receptor 3 | chr5:21561026-21561953 FORWARD LENGTH=188;; (*ITAG) Solyc03g007310.2.1 (e_value=8e-102) genomic_reference:SL2.40ch03 gene_region:1873856-1877023 transcript_region:SL2.40ch03:1873856..1877023+ go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00014569g0111.1 protein AED:0.06 eAED:0.06 QI:266|0.33|0.5|0.75|0|0|4|294|94 NbS00014569g0115.1 protein AED:0.16 eAED:0.16 QI:31|1|1|1|0.66|1|4|417|249 NbS00014569g0112.1 protein AED:0.23 eAED:0.26 QI:325|0.75|0.66|1|0.75|0.77|9|350|372 NbS00060362g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.6|1|1|1|5|0|398; (*GB) gi|147858322|emb|CAN81424.1| (e_value=5e-132) hypothetical protein VITISV_035944 [Vitis vinifera];; (*SWP) sp|Q9SIV3|GLK1_ARATH (e_value=4e-13) Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2;; (*TAIR) AT2G03500.1 (e_value=2e-53) | Symbols: | Homeodomain-like superfamily protein | chr2:1059926-1062259 FORWARD LENGTH=432;; (*ITAG) Solyc01g108300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87422159-87424738 transcript_region:SL2.40ch01:87422159..87424738+ go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7LQI3_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00055652g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0|0.66|3|0|185; (*GB) gi|388518463|gb|AFK47293.1| (e_value=4e-63) unknown [Lotus japonicus];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=3e-55) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=3e-56) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc04g050010.1.1 (e_value=5e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:44250557-44252085 transcript_region:SL2.40ch04:44250557..44252085+ go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbC26167850g0001.1 protein AED:0.00 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|255555977|ref|XP_002519023.1| (e_value=3e-59) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O24463|PBF_MAIZE (e_value=7e-26) Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1;; (*TAIR) AT4G38000.1 (e_value=5e-27) | Symbols: DOF4.7 | DNA binding with one finger 4.7 | chr4:17858436-17859176 FORWARD LENGTH=246;; (*ITAG) Solyc02g078620.1.1 (e_value=1e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37850777-37851631 transcript_region:SL2.40ch02:37850777..37851631+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00009871g0014.1 protein AED:0.15 eAED:0.15 QI:59|0.72|0.66|1|0.81|0.75|12|331|338; (*GB) gi|225439256|ref|XP_002263213.1| (e_value=0.0) PREDICTED: probable replication factor C subunit 3 [Vitis vinifera];; (*SWP) sp|Q2TBV1|RFC3_BOVIN (e_value=1e-121) Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1;; (*TAIR) AT5G27740.1 (e_value=0.0) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc01g020440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:30867272-30881047 transcript_region:SL2.40ch01:30867272..30881047- go_terms:GO:0005515,GO:0003689 functional_description:"Replication factor C subunit 5 (AHRD V1 ***- B6T5I0_MAIZE); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005515,GO:0003689 NbS00009871g0013.1 protein AED:0.18 eAED:0.18 QI:29|0|0.33|0.66|0|0|3|96|22 NbS00009871g0012.1 protein AED:0.77 eAED:0.77 QI:0|0.5|0|0.66|1|1|3|0|156; (*GB) gi|255569476|ref|XP_002525705.1| (e_value=5e-34) BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis];; (*SWP) sp|Q9SE95|FIP2_ARATH (e_value=4e-28) FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1;; (*TAIR) AT5G55000.2 (e_value=3e-29) | Symbols: FIP2 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein | chr5:22318644-22321599 FORWARD LENGTH=298;; (*ITAG) Solyc10g076860.1.1 (e_value=5e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59148140-59170739 transcript_region:SL2.40ch10:59148140..59170739+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- Q55D73_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00040123g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|0.66|0.5|4|266|296; (*GB) gi|255538946|ref|XP_002510538.1| (e_value=6e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G19990.1 (e_value=1e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). | chr1:6935327-6936665 FORWARD LENGTH=251;; (*ITAG) Solyc04g081470.2.1 (e_value=3e-23) genomic_reference:SL2.40ch04 gene_region:63024057-63026983 transcript_region:SL2.40ch04:63024057..63026983+ functional_description:"Os05g0596200 protein (Fragment) (AHRD V1 *-*- Q0DFE0_ORYSJ)"; NbS00040123g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|138; (*ITAG) Solyc04g081180.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62780227-62780466 transcript_region:SL2.40ch04:62780227..62780466- functional_description:"Unknown Protein (AHRD V1)"; NbS00034900g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|191; (*GB) gi|82623367|gb|ABB87098.1| (e_value=4e-96) hypothetical protein [Solanum tuberosum];; (*TAIR) AT2G27830.1 (e_value=1e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc01g009430.2.1 (e_value=5e-98) genomic_reference:SL2.40ch01 gene_region:3634636-3636306 transcript_region:SL2.40ch01:3634636..3636306- functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 *--- Q0E1G8_ORYSJ)"; NbS00006740g0010.1 protein AED:0.24 eAED:0.25 QI:0|0.54|0.41|1|0.90|0.83|12|25|840; (*GB) gi|147863931|emb|CAN81112.1| (e_value=0.0) hypothetical protein VITISV_032626 [Vitis vinifera];; (*SWP) sp|Q9M1I1|FB304_ARATH (e_value=0.0) F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1;; (*TAIR) AT3G54460.1 (e_value=0.0) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein | chr3:20162050-20167186 REVERSE LENGTH=1378;; (*ITAG) Solyc11g005250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:202911-212246 transcript_region:SL2.40ch11:202911..212246- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- C5FVY4_NANOT); contains Interpro domain(s) IPR011124 Zinc finger, CW-type "; GO:0005524,GO:0008270 NbS00037851g0005.1 protein AED:0.33 eAED:0.33 QI:228|0.5|0.33|1|0.5|0.66|3|242|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=7e-101) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P27164|CALM3_PETHY (e_value=5e-102) Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2;; (*TAIR) AT2G27030.3 (e_value=1e-102) | Symbols: CAM5 | calmodulin 5 | chr2:11532069-11534176 FORWARD LENGTH=181;; (*ITAG) Solyc10g081170.1.1 (e_value=7e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbC23850450g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|255553221|ref|XP_002517653.1| (e_value=3e-36) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=4e-29) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT1G52540.1 (e_value=1e-34) | Symbols: | Protein kinase superfamily protein | chr1:19570298-19571884 REVERSE LENGTH=350;; (*ITAG) Solyc03g116760.2.1 (e_value=2e-40) genomic_reference:SL2.40ch03 gene_region:60099710-60104460 transcript_region:SL2.40ch03:60099710..60104460- go_terms:GO:0005515,GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase FEI 1 (AHRD V1 **** FEI1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016709g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|504; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00011566g0005.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|451; (*GB) gi|225423977|ref|XP_002282578.1| (e_value=7e-147) PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera];; (*SWP) sp|Q8RWD0|COL16_ARATH (e_value=5e-93) Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2;; (*TAIR) AT1G25440.1 (e_value=4e-94) | Symbols: | B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417;; (*ITAG) Solyc05g009310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3442971-3445112 transcript_region:SL2.40ch05:3442971..3445112+ go_terms:GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 16 (AHRD V1 **-- B6TEI1_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00002606g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0|1|0.33|0.5|4|0|441; (*GB) gi|255545694|ref|XP_002513907.1| (e_value=0.0) carbohydrate transporter, putative [Ricinus communis];; (*TAIR) AT1G78130.1 (e_value=0.0) | Symbols: UNE2 | Major facilitator superfamily protein | chr1:29400171-29401814 FORWARD LENGTH=490;; (*ITAG) Solyc12g057010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48453419-48455730 transcript_region:SL2.40ch12:48453419..48455730+ go_terms:GO:0055085 functional_description:"Transporter major facilitator family (AHRD V1 **-- B5IUM5_9EURY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00035859g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|0.66|0.5|4|0|362; (*GB) gi|242032405|ref|XP_002463597.1| (e_value=3e-140) hypothetical protein SORBIDRAFT_01g002640 [Sorghum bicolor];; (*SWP) sp|Q9LUN4|CHX19_ARATH (e_value=7e-81) Cation/H(+) antiporter 19 OS=Arabidopsis thaliana GN=CHX19 PE=2 SV=1;; (*TAIR) AT3G17630.1 (e_value=5e-82) | Symbols: ATCHX19, CHX19 | cation/H+ exchanger 19 | chr3:6029201-6031773 FORWARD LENGTH=800;; (*ITAG) Solyc08g081820.2.1 (e_value=5e-110) genomic_reference:SL2.40ch08 gene_region:61928548-61931640 transcript_region:SL2.40ch08:61928548..61931640- go_terms:GO:0015385 functional_description:"Cation/H+ antiporter (AHRD V1 **** Q8A6U3_BACTN); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00035859g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|1|1|4|0|437; (*GB) gi|225463679|ref|XP_002276066.1| (e_value=0.0) PREDICTED: transmembrane protein 53 [Vitis vinifera];; (*SWP) sp|Q6DJC8|TM53B_XENLA (e_value=2e-23) Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1;; (*TAIR) AT3G19970.1 (e_value=1e-175) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:6959644-6961367 FORWARD LENGTH=434;; (*ITAG) Solyc02g020890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:10982791-10987429 transcript_region:SL2.40ch02:10982791..10987429+ functional_description:"Transmembrane protein 53 (AHRD V1 *--- B5X6E4_SALSA); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00049655g0001.1 protein AED:0.15 eAED:0.15 QI:370|1|0.5|1|0|0|2|0|338; (*GB) gi|225442186|ref|XP_002276676.1| (e_value=2e-180) PREDICTED: solute carrier family 25 member 44-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RD67|S2544_PONAB (e_value=7e-32) Solute carrier family 25 member 44 OS=Pongo abelii GN=SLC25A44 PE=2 SV=2;; (*TAIR) AT1G72820.1 (e_value=2e-169) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27403457-27404506 FORWARD LENGTH=349;; (*ITAG) Solyc03g121920.2.1 (e_value=8e-163) genomic_reference:SL2.40ch03 gene_region:63981706-63985166 transcript_region:SL2.40ch03:63981706..63985166+ go_terms:GO:0022857 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0022857 NbS00049655g0006.1 protein AED:0.26 eAED:0.27 QI:23|0.4|0.5|1|0.4|0.5|6|0|196; (*GB) gi|116563475|gb|ABJ99759.1| (e_value=7e-41) PHD1 [Medicago truncatula];; (*SWP) sp|Q2R837|ALFL8_ORYSJ (e_value=3e-35) PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1;; (*TAIR) AT3G42790.1 (e_value=3e-36) | Symbols: AL3 | alfin-like 3 | chr3:14878128-14879618 REVERSE LENGTH=250;; (*ITAG) Solyc06g062850.2.1 (e_value=2e-42) genomic_reference:SL2.40ch06 gene_region:36037831-36043258 transcript_region:SL2.40ch06:36037831..36043258- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00029753g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|2346986|dbj|BAA21927.1| (e_value=4e-108) ZPT3-3 [Petunia x hybrida];; (*SWP) sp|Q9M202|ZAT9_ARATH (e_value=7e-42) Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1;; (*TAIR) AT3G60580.1 (e_value=5e-43) | Symbols: | C2H2-like zinc finger protein | chr3:22394007-22394873 FORWARD LENGTH=288;; (*ITAG) Solyc01g090840.2.1 (e_value=2e-114) genomic_reference:SL2.40ch01 gene_region:76304117-76306164 transcript_region:SL2.40ch01:76304117..76306164+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00039845g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|0|0|2|0|46 NbS00039845g0007.1 protein AED:0.17 eAED:0.18 QI:0|0.66|0.42|0.85|0.66|0.85|7|0|204; (*GB) gi|297739071|emb|CBI28560.3| (e_value=1e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LDT3|YAB4_ARATH (e_value=9e-64) Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2;; (*TAIR) AT1G23420.1 (e_value=7e-65) | Symbols: INO | Plant-specific transcription factor YABBY family protein | chr1:8317423-8319104 FORWARD LENGTH=231;; (*ITAG) Solyc05g005240.1.1 (e_value=1e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:191257-193043 transcript_region:SL2.40ch05:191257..193043- go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00039845g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|182; (*ITAG) Solyc05g005220.1.1 (e_value=7e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:187568-188344 transcript_region:SL2.40ch05:187568..188344- functional_description:"Unknown Protein (AHRD V1)"; NbS00012742g0007.1 protein AED:0.30 eAED:0.30 QI:467|0.95|0.95|1|0.80|0.81|22|646|944; (*GB) gi|225441852|ref|XP_002284163.1| (e_value=0.0) PREDICTED: villin-2-like [Vitis vinifera];; (*SWP) sp|O81644|VILI2_ARATH (e_value=0.0) Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2;; (*TAIR) AT2G41740.1 (e_value=0.0) | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410962-17416878 REVERSE LENGTH=976;; (*ITAG) Solyc04g015830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6174875-6186468 transcript_region:SL2.40ch04:6174875..6186468+ go_terms:GO:0051015 functional_description:"Actin-binding protein gelsolin (AHRD V1 **-* D8UJD7_VOLCA); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0051015 NbS00026670g0001.1 protein AED:0.03 eAED:0.03 QI:33|0|0.5|1|0|1|2|333|211; (*GB) gi|255569869|ref|XP_002525898.1| (e_value=4e-15) hypothetical protein RCOM_0540750 [Ricinus communis];; (*ITAG) Solyc03g005440.2.1 (e_value=4e-25) genomic_reference:SL2.40ch03 gene_region:326486-334139 transcript_region:SL2.40ch03:326486..334139+ go_terms:GO:0032259,GO:0003723 functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *--- Q9FMZ7_ARATH); contains Interpro domain(s) IPR008395 Agenet "; GO:0032259,GO:0003723 NbS00026670g0008.1 protein AED:0.23 eAED:0.25 QI:0|0.16|0|1|0|0.28|7|0|431; (*GB) gi|356507696|ref|XP_003522600.1| (e_value=9e-131) PREDICTED: cellulose synthase-like protein G1-like [Glycine max];; (*SWP) sp|Q0WVN5|CSLG3_ARATH (e_value=1e-79) Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2;; (*TAIR) AT4G23990.1 (e_value=9e-81) | Symbols: ATCSLG3, CSLG3 | cellulose synthase like G3 | chr4:12456491-12460498 FORWARD LENGTH=751;; (*ITAG) Solyc00g030000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12573598-12578147 transcript_region:SL2.40ch00:12573598..12578147- go_terms:GO:0016759 functional_description:"Cellulose synthase-4 (AHRD V1 **** Q9LLI6_MAIZE); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00026670g0009.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|184; (*GB) gi|297737188|emb|CBI26389.3| (e_value=8e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q570S7|CSLG1_ARATH (e_value=3e-32) Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1;; (*TAIR) AT4G24010.1 (e_value=2e-33) | Symbols: ATCSLG1, CSLG1 | cellulose synthase like G1 | chr4:12466391-12469760 FORWARD LENGTH=760;; (*ITAG) Solyc00g154480.1.1 (e_value=6e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:17539478-17543054 transcript_region:SL2.40ch00:17539478..17543054+ go_terms:GO:0016829,GO:0016020 functional_description:"Cellulose synthase-like protein E1 (AHRD V1 *-*- CSLE1_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0016020 NbS00061644g0003.1 protein AED:0.03 eAED:0.03 QI:93|1|1|1|1|1|4|295|405; (*GB) gi|350537231|ref|NP_001234029.1| (e_value=0.0) probable pectate lyase P18 precursor [Solanum lycopersicum];; (*SWP) sp|P24396|PLY18_SOLLC (e_value=0.0) Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1;; (*TAIR) AT5G63180.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:25341106-25343113 REVERSE LENGTH=432;; (*ITAG) Solyc02g093580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48970653-48972653 transcript_region:SL2.40ch02:48970653..48972653- go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q9M505_VITVI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00001698g0014.1 protein AED:0.18 eAED:0.18 QI:340|0.5|0.4|1|0.75|0.6|5|0|260; (*GB) gi|359491357|ref|XP_003634271.1| (e_value=3e-28) PREDICTED: transcription factor TCP5-like [Vitis vinifera];; (*SWP) sp|Q9FME3|TCP5_ARATH (e_value=4e-17) Transcription factor TCP5 OS=Arabidopsis thaliana GN=TCP5 PE=2 SV=1;; (*TAIR) AT5G60970.1 (e_value=3e-18) | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 | chr5:24535570-24536652 REVERSE LENGTH=360;; (*ITAG) Solyc06g069460.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:39599418-39600254 transcript_region:SL2.40ch06:39599418..39600254- functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK40_9ASPA); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00001698g0017.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|0.5|0.66|3|0|153; (*GB) gi|57013941|ref|YP_173414.1| (e_value=2e-25) hypothetical protein NitaMp070 [Nicotiana tabacum]; NbS00001698g0019.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0|1|1|1|4|0|1356; (*GB) gi|297734072|emb|CBI15319.3| (e_value=3e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YYC0|C3H55_ORYSJ (e_value=5e-19) Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1;; (*TAIR) AT3G26850.2 (e_value=6e-33) | Symbols: | histone-lysine N-methyltransferases | chr3:9896541-9897415 REVERSE LENGTH=265;; (*ITAG) Solyc06g069440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39580517-39588810 transcript_region:SL2.40ch06:39580517..39588810+ functional_description:"Zinc finger CCCH domain-containing protein 55 (AHRD V1 *-*- C3H55_ORYSJ)"; NbS00001698g0020.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0.5|0|3|0|291; (*GB) gi|225456548|ref|XP_002265203.1| (e_value=3e-48) PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera];; (*ITAG) Solyc12g038520.1.1 (e_value=3e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35933880-35935930 transcript_region:SL2.40ch12:35933880..35935930- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00001698g0015.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0.28|1|0.83|0.85|7|0|754; (*GB) gi|255547163|ref|XP_002514639.1| (e_value=1e-90) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G26190.1 (e_value=2e-59) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:13262473-13266282 REVERSE LENGTH=1057;; (*ITAG) Solyc06g069450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39591191-39595475 transcript_region:SL2.40ch06:39591191..39595475+ functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01A04_OSTTA); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00013445g0002.1 protein AED:0.04 eAED:0.04 QI:56|1|0.5|1|0|0.5|2|53|45 NbS00049081g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.75|1|1|1|4|223|385; (*GB) gi|225429710|ref|XP_002280196.1| (e_value=4e-147) PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=8e-101) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G05940.1 (e_value=2e-130) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc08g061250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45514851-45516921 transcript_region:SL2.40ch08:45514851..45516921+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00049081g0007.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0.33|0.25|4|0|294; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00049081g0008.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0.5|2|0|77; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00030619g0003.1 protein AED:0.05 eAED:0.05 QI:158|0.75|0.8|1|0.25|0.2|5|352|229; (*GB) gi|225451825|ref|XP_002281596.1| (e_value=1e-51) PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Vitis vinifera];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-35) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G15790.2 (e_value=4e-39) | Symbols: | RING/U-box superfamily protein | chr5:5149800-5150964 FORWARD LENGTH=232;; (*ITAG) Solyc05g012010.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:5212785-5215956 transcript_region:SL2.40ch05:5212785..5215956+ go_terms:GO:0008270 functional_description:"RING-H2 finger protein (Fragment) (AHRD V1 *-*- Q7X9M1_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00061394g0001.1 protein AED:0.17 eAED:0.18 QI:0|0.83|0.85|1|1|1|7|0|455; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=0.0) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-81) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G17700.1 (e_value=5e-168) | Symbols: | MATE efflux family protein | chr5:5831025-5833415 REVERSE LENGTH=497;; (*ITAG) Solyc10g081260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00005637g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|892; (*GB) gi|15144509|gb|AAK84476.1| (e_value=0.0) unknown [Solanum lycopersicum];; (*TAIR) AT1G58210.1 (e_value=0.0) | Symbols: EMB1674 | kinase interacting family protein | chr1:21553621-21558056 FORWARD LENGTH=1246;; (*ITAG) Solyc05g051390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60828255-60831667 transcript_region:SL2.40ch05:60828255..60831667- functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00005637g0006.1 protein AED:0.12 eAED:0.12 QI:17|1|0.5|1|1|1|2|0|41; (*ITAG) Solyc06g073360.2.1 (e_value=3e-21) genomic_reference:SL2.40ch06 gene_region:41594463-41597870 transcript_region:SL2.40ch06:41594463..41597870+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004085g0025.1 protein AED:0.10 eAED:0.10 QI:336|0.92|1|1|0.5|0.6|15|723|698; (*GB) gi|255544472|ref|XP_002513297.1| (e_value=0.0) strubbelig receptor, putative [Ricinus communis];; (*SWP) sp|Q6R2K1|SRF5_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1;; (*TAIR) AT1G78980.1 (e_value=0.0) | Symbols: SRF5 | STRUBBELIG-receptor family 5 | chr1:29707923-29711266 REVERSE LENGTH=699;; (*ITAG) Solyc06g063360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36426594-36436029 transcript_region:SL2.40ch06:36426594..36436029- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00004085g0022.1 protein AED:0.15 eAED:0.15 QI:0|0.88|0.88|1|0.76|0.88|18|386|822; (*GB) gi|356544401|ref|XP_003540640.1| (e_value=0.0) PREDICTED: general transcription factor 3C polypeptide 3-like [Glycine max];; (*SWP) sp|Q9Y5Q9|TF3C3_HUMAN (e_value=2e-58) General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1;; (*TAIR) AT1G17680.2 (e_value=0.0) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr1:6076388-6082160 FORWARD LENGTH=896;; (*ITAG) Solyc06g063420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36475902-36493708 transcript_region:SL2.40ch06:36475902..36493708- go_terms:GO:0005488 functional_description:"Tfc4p like TFIIIC subunit TPR repeat containing basal transcription factor (AHRD V1 *--- Q5CRV9_CRYPV); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00004085g0023.1 protein AED:0.20 eAED:0.20 QI:0|0.86|0.87|1|0.8|0.75|16|236|712; (*GB) gi|255557853|ref|XP_002519956.1| (e_value=0.0) ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis];; (*SWP) sp|Q5LUP9|CLPX_SILPO (e_value=3e-123) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=clpX PE=3 SV=1;; (*TAIR) AT1G33360.1 (e_value=0.0) | Symbols: | ATP-dependent Clp protease | chr1:12092111-12095789 FORWARD LENGTH=656;; (*ITAG) Solyc06g063410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36465199-36475111 transcript_region:SL2.40ch06:36465199..36475111- go_terms:GO:0005524,GO:0017111,GO:0006457 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 ***- B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0005524,GO:0017111,GO:0006457 NbS00004085g0015.1 protein AED:0.29 eAED:0.29 QI:92|0.25|0.2|1|1|1|5|0|225; (*GB) gi|110377793|gb|ABG73417.1| (e_value=7e-87) chloroplast pigment-binding protein CP26 [Nicotiana tabacum];; (*SWP) sp|Q9XF89|CB5_ARATH (e_value=2e-72) Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1;; (*TAIR) AT4G10340.1 (e_value=1e-73) | Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280;; (*ITAG) Solyc06g063370.2.1 (e_value=1e-86) genomic_reference:SL2.40ch06 gene_region:36437291-36439451 transcript_region:SL2.40ch06:36437291..36439451- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 1A, chloroplastic (AHRD V1 ***- CB2A_PYRPY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00004085g0007.1 protein AED:0.62 eAED:0.88 QI:0|0|0|0.66|1|1|3|0|100 NbS00004085g0021.1 protein AED:0.13 eAED:0.13 QI:222|1|1|1|0.5|0.66|3|380|185; (*GB) gi|225443379|ref|XP_002266544.1| (e_value=3e-76) PREDICTED: reticulon-like protein B22 [Vitis vinifera];; (*SWP) sp|Q8GWH5|RTNLT_ARATH (e_value=2e-68) Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1;; (*TAIR) AT1G78895.1 (e_value=1e-69) | Symbols: | Reticulon family protein | chr1:29658313-29659866 REVERSE LENGTH=164;; (*ITAG) Solyc08g077470.2.1 (e_value=1e-92) genomic_reference:SL2.40ch08 gene_region:58561402-58563011 transcript_region:SL2.40ch08:58561402..58563011- go_terms:GO:0005783 functional_description:"Reticulon-like protein B22 (AHRD V1 ***- RTNLT_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00042662g0001.1 protein AED:0.06 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|355; (*GB) gi|225439850|ref|XP_002277967.1| (e_value=5e-103) PREDICTED: uncharacterized protein LOC100267054 [Vitis vinifera];; (*TAIR) AT3G53560.1 (e_value=7e-95) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19859954-19860976 REVERSE LENGTH=340;; (*ITAG) Solyc09g005740.1.1 (e_value=3e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:508767-509831 transcript_region:SL2.40ch09:508767..509831+ go_terms:GO:0005488 functional_description:"Chloroplast lumen common family protein (AHRD V1 *--- D7LUJ6_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00042662g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|131 NbS00049619g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.75|0.87|0.71|0.75|8|357|421; (*GB) gi|224065022|ref|XP_002301634.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0QLE4|DML_EUBBA (e_value=5e-61) 2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1;; (*TAIR) AT2G43180.3 (e_value=1e-171) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953719-17955774 REVERSE LENGTH=478;; (*ITAG) Solyc05g056270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64763836-64771346 transcript_region:SL2.40ch05:64763836..64771346+ go_terms:GO:0008152,GO:0003824 functional_description:"Isocitrate lyase (AHRD V1 *-*- Q2TWG5_ASPOR); contains Interpro domain(s) IPR000918 Isocitrate lyase and phosphorylmutase "; GO:0008152,GO:0003824 NbS00049619g0009.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.75|0.88|9|94|342; (*GB) gi|225446303|ref|XP_002270417.1| (e_value=0.0) PREDICTED: phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|Q94K73|SYFM_ARATH (e_value=0.0) Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1;; (*TAIR) AT3G58140.1 (e_value=0.0) | Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21529988-21532386 REVERSE LENGTH=429;; (*ITAG) Solyc05g056260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64755903-64760321 transcript_region:SL2.40ch05:64755903..64760321- go_terms:GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 *-** Q5N0F1_SYNP6); contains Interpro domain(s) IPR004530 Phenylalanyl-tRNA synthetase, class IIc, mitochondrial "; GO:0004826 NbS00052459g0003.1 protein AED:0.02 eAED:0.02 QI:284|1|1|1|0.66|0.5|4|511|691; (*GB) gi|255537659|ref|XP_002509896.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=4e-136) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=3e-137) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc08g081830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61940975-61945234 transcript_region:SL2.40ch08:61940975..61945234+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00006175g0109.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0|0.4|5|276|242 NbS00022999g0005.1 protein AED:0.23 eAED:0.23 QI:308|0.86|0.81|1|0.8|0.81|16|279|880; (*GB) gi|255548453|ref|XP_002515283.1| (e_value=0.0) dipeptidyl-peptidase, putative [Ricinus communis];; (*SWP) sp|Q8VZF3|CGEP_ARATH (e_value=0.0) Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2;; (*TAIR) AT2G47390.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr2:19442278-19446253 REVERSE LENGTH=961;; (*ITAG) Solyc01g079450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71013718-71023830 transcript_region:SL2.40ch01:71013718..71023830- go_terms:GO:0006508 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 ***- B4SK00_STRM5); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0006508 NbS00054808g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|81; (*ITAG) Solyc06g050350.2.1 (e_value=1e-25) genomic_reference:SL2.40ch06 gene_region:29452798-29455581 transcript_region:SL2.40ch06:29452798..29455581- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q7XIW7_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00054808g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|480; (*GB) gi|225439633|ref|XP_002266471.1| (e_value=2e-82) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|F4ISY0|Y2837_ARATH (e_value=4e-34) WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1;; (*TAIR) AT2G38370.1 (e_value=3e-35) | Symbols: | Plant protein of unknown function (DUF827) | chr2:16072184-16074168 REVERSE LENGTH=522;; (*ITAG) Solyc06g050350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29452798-29455581 transcript_region:SL2.40ch06:29452798..29455581- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q7XIW7_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00060366g0006.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|0.5|1|3|521|133; (*GB) gi|255575681|ref|XP_002528740.1| (e_value=7e-80) iron-sulfur cluster assembly protein, putative [Ricinus communis];; (*SWP) sp|Q8LBM4|ISAM1_ARATH (e_value=2e-74) Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2;; (*TAIR) AT2G16710.1 (e_value=2e-75) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137;; (*ITAG) Solyc11g006920.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1435246-1438449 transcript_region:SL2.40ch11:1435246..1438449+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein erpA (AHRD V1 ***- ERPA_ALHEH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; GO:0016226 NbS00060366g0003.1 protein AED:0.33 eAED:0.49 QI:0|0|0|1|1|1|2|0|152; (*ITAG) Solyc09g009450.1.1 (e_value=4e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2886524-2888669 transcript_region:SL2.40ch09:2886524..2888669- functional_description:"Unknown Protein (AHRD V1)"; NbS00002062g0002.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|255542360|ref|XP_002512243.1| (e_value=5e-59) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11000.1 (e_value=1e-24) | Symbols: | Plant protein of unknown function (DUF868) | chr5:3479166-3480335 REVERSE LENGTH=389;; (*ITAG) Solyc01g097830.2.1 (e_value=4e-99) genomic_reference:SL2.40ch01 gene_region:80289524-80290790 transcript_region:SL2.40ch01:80289524..80290790- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS19_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00002062g0007.1 protein AED:0.10 eAED:0.11 QI:313|0.85|0.62|1|1|1|8|0|766; (*GB) gi|359487822|ref|XP_003633655.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase WNK1-like [Vitis vinifera];; (*SWP) sp|Q9CAV6|WNK1_ARATH (e_value=0.0) Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1;; (*TAIR) AT3G04910.1 (e_value=0.0) | Symbols: WNK1, ZIK4, ATWNK1 | with no lysine (K) kinase 1 | chr3:1355084-1358057 FORWARD LENGTH=700;; (*ITAG) Solyc01g097840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80304661-80308285 transcript_region:SL2.40ch01:80304661..80308285+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00002062g0005.1 protein AED:0.30 eAED:0.30 QI:45|0.85|0.75|1|0.71|0.62|8|1543|192; (*GB) gi|224125592|ref|XP_002319624.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT3G04890.1 (e_value=5e-34) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr3:1347708-1349066 FORWARD LENGTH=216;; (*ITAG) Solyc01g097820.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:80285056-80289326 transcript_region:SL2.40ch01:80285056..80289326+ functional_description:"SOUL heme-binding protein (AHRD V1 *--- A8JFN5_CHLRE); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00026045g0005.1 protein AED:0.11 eAED:0.14 QI:0|0.2|0.5|1|0.6|0.66|6|686|1031; (*GB) gi|255579013|ref|XP_002530358.1| (e_value=2e-153) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G18310.1 (e_value=7e-91) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6284523-6287144 REVERSE LENGTH=873;; (*ITAG) Solyc01g098450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80732427-80735316 transcript_region:SL2.40ch01:80732427..80735316+ functional_description:"Genomic DNA chromosome 3 P1 clone MYF24 (AHRD V1 ***- Q9LS59_ARATH)"; NbS00008684g0021.1 protein AED:0.17 eAED:0.17 QI:154|0.88|0.89|1|0.88|0.89|19|920|742; (*GB) gi|225446449|ref|XP_002277029.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=0.0) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00008684g0018.1 protein AED:0.25 eAED:0.25 QI:533|1|0.66|1|0|0.33|3|0|77 NbS00008684g0017.1 protein AED:0.28 eAED:0.31 QI:167|0.66|0.68|1|0.66|0.68|16|332|467; (*GB) gi|225446447|ref|XP_002276985.1| (e_value=2e-152) PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera];; (*SWP) sp|O74340|DCA13_SCHPO (e_value=1e-79) Protein sof1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sof1 PE=2 SV=1;; (*TAIR) AT4G28450.1 (e_value=9e-144) | Symbols: | nucleotide binding;protein binding | chr4:14061724-14064582 REVERSE LENGTH=452;; (*ITAG) Solyc07g053660.2.1 (e_value=1e-165) genomic_reference:SL2.40ch07 gene_region:59431974-59438706 transcript_region:SL2.40ch07:59431974..59438706+ functional_description:"WD repeat protein (AHRD V1 **-- C4MAV3_ENTHI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00008684g0025.1 protein AED:0.42 eAED:0.42 QI:8|0.5|0.33|1|1|1|3|263|129; (*GB) gi|225446443|ref|XP_002276788.1| (e_value=5e-30) PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera];; (*TAIR) AT1G28395.4 (e_value=2e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9969817-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc07g053670.2.1 (e_value=2e-38) genomic_reference:SL2.40ch07 gene_region:59441366-59444178 transcript_region:SL2.40ch07:59441366..59444178+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008684g0009.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|3|0|184; (*GB) gi|388507556|gb|AFK41844.1| (e_value=2e-50) unknown [Lotus japonicus];; (*SWP) sp|O49453|Y4844_ARATH (e_value=1e-46) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT2G33845.1 (e_value=8e-50) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:14317781-14318712 FORWARD LENGTH=182;; (*ITAG) Solyc07g053690.2.1 (e_value=1e-65) genomic_reference:SL2.40ch07 gene_region:59452115-59454460 transcript_region:SL2.40ch07:59452115..59454460- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00008684g0002.1 protein AED:0.11 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|558|221; (*GB) gi|225424323|ref|XP_002284784.1| (e_value=4e-71) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-33) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G14890.1 (e_value=4e-58) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:5137045-5137704 FORWARD LENGTH=219;; (*ITAG) Solyc10g076730.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00010868g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|224057493|ref|XP_002299239.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39725.2 (e_value=1e-37) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr2:16570070-16570342 FORWARD LENGTH=90;; (*ITAG) Solyc09g007070.1.1 (e_value=2e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:717482-717784 transcript_region:SL2.40ch09:717482..717784+ go_terms:GO:0003824 functional_description:"Succinate dehydrogenase assembly factor 1 homolog, mitochondrial (AHRD V1 **-- SDHF1_YEAST); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0003824 NbS00010868g0007.1 protein AED:0.10 eAED:0.52 QI:38|1|0.5|1|1|1|2|0|223; (*GB) gi|297740946|emb|CBI31258.3| (e_value=2e-69) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G60780.1 (e_value=9e-16) | Symbols: | Protein of unknown function (DUF1442) | chr3:22462695-22463630 FORWARD LENGTH=218;; (*ITAG) Solyc01g095920.2.1 (e_value=3e-27) genomic_reference:SL2.40ch01 gene_region:78825307-78827149 transcript_region:SL2.40ch01:78825307..78827149- go_terms:GO:0008171 functional_description:"O-methyltransferase family 3 (AHRD V1 ***- B5ZT51_RHILW); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; GO:0008171 NbC24144256g0001.1 protein AED:0.06 eAED:0.79 QI:48|0|0.5|1|0|0.5|2|70|62 NbC25895973g0001.1 protein AED:0.01 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|406; (*GB) gi|225445146|ref|XP_002280643.1| (e_value=8e-151) PREDICTED: E3 ubiquitin-protein ligase ATL42 [Vitis vinifera];; (*SWP) sp|Q5XF85|ATL42_ARATH (e_value=3e-113) E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2;; (*TAIR) AT4G28890.1 (e_value=3e-114) | Symbols: | RING/U-box superfamily protein | chr4:14256437-14257735 REVERSE LENGTH=432;; (*ITAG) Solyc05g018310.1.1 (e_value=2e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:20435653-20436627 transcript_region:SL2.40ch05:20435653..20436627- go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00003058g0007.1 protein AED:0.07 eAED:0.12 QI:447|0.5|0.57|1|0.16|0.14|7|112|736; (*GB) gi|255547061|ref|XP_002514588.1| (e_value=4e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g011830.2.1 (e_value=6e-68) genomic_reference:SL2.40ch05 gene_region:5061298-5063494 transcript_region:SL2.40ch05:5061298..5063494- functional_description:"Unknown Protein (AHRD V1)"; NbS00028834g0002.1 protein AED:0.06 eAED:0.07 QI:0|0.9|0.90|1|0.8|0.72|11|1137|818; (*GB) gi|297734212|emb|CBI15459.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LF10|CRS1_ARATH (e_value=2e-106) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2;; (*TAIR) AT3G18390.1 (e_value=0.0) | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-containing protein | chr3:6313572-6317584 FORWARD LENGTH=848;; (*ITAG) Solyc03g119450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62114047-62121191 transcript_region:SL2.40ch03:62114047..62121191+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 **-- CRS1_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00028834g0010.1 protein AED:0.18 eAED:0.18 QI:398|1|0.92|1|1|1|14|0|830; (*GB) gi|359491448|ref|XP_002276429.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262742 [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=4e-14) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT3G18370.1 (e_value=0.0) | Symbols: SYTF, ATSYTF, NTMC2TYPE3, NTMC2T3 | C2 domain-containing protein | chr3:6306362-6310256 FORWARD LENGTH=815;; (*ITAG) Solyc03g119440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62104673-62113351 transcript_region:SL2.40ch03:62104673..62113351+ functional_description:"Plant synaptotagmin (AHRD V1 **-- B9IE39_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00028834g0012.1 protein AED:0.26 eAED:0.38 QI:0|0.2|0|1|0.2|0|6|0|284; (*GB) gi|356524138|ref|XP_003530689.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100801770 [Glycine max];; (*ITAG) Solyc03g119460.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:62122428-62126103 transcript_region:SL2.40ch03:62122428..62126103- functional_description:"Cleavage stimulation factor like protein (AHRD V1 ***- Q9M9G6_ARATH)"; NbS00008584g0006.1 protein AED:0.11 eAED:0.11 QI:201|0.8|0.72|1|0.7|0.81|11|0|1183; (*GB) gi|225432402|ref|XP_002276882.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase ULK4-like [Vitis vinifera];; (*SWP) sp|Q5R4M2|ULK4_PONAB (e_value=6e-58) Serine/threonine-protein kinase ULK4 OS=Pongo abelii GN=ULK4 PE=2 SV=1;; (*TAIR) AT5G18700.1 (e_value=0.0) | Symbols: RUK, EMB3013 | Protein kinase family protein with ARM repeat domain | chr5:6235387-6240733 REVERSE LENGTH=1366;; (*ITAG) Solyc08g013940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3322188-3331230 transcript_region:SL2.40ch08:3322188..3331230+ go_terms:GO:0008017,GO:0016301 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NGF5_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008017,GO:0016301 NbS00022575g0008.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.2|1|1|1|5|0|501; (*GB) gi|255547996|ref|XP_002515055.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*TAIR) AT3G26140.1 (e_value=2e-145) | Symbols: | Cellulase (glycosyl hydrolase family 5) protein | chr3:9559742-9563070 REVERSE LENGTH=508;; (*ITAG) Solyc05g013810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7120501-7123975 transcript_region:SL2.40ch05:7120501..7123975+ go_terms:GO:0005975 functional_description:"Glycosyl hydrolase family 5 protein/cellulase (AHRD V1 **-- A8NVS8_COPC7); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00022575g0009.1 protein AED:0.16 eAED:0.16 QI:0|1|0.9|1|0.66|0.7|10|1101|326; (*GB) gi|224140867|ref|XP_002323800.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|O23710|PSB7A_ARATH (e_value=8e-174) Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2;; (*TAIR) AT3G27430.2 (e_value=6e-175) | Symbols: PBB1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:10152910-10155052 FORWARD LENGTH=273;; (*ITAG) Solyc04g024420.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:11945503-11951273 transcript_region:SL2.40ch04:11945503..11951273- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- A9PCK6_POPTR); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00023019g0007.1 protein AED:0.21 eAED:0.21 QI:311|0.77|0.6|0.9|0.44|0.6|10|0|447; (*GB) gi|224102803|ref|XP_002312807.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q17QL9|T184C_BOVIN (e_value=5e-32) Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1;; (*TAIR) AT4G38360.2 (e_value=0.0) | Symbols: LAZ1 | Protein of unknown function (DUF300) | chr4:17967389-17969798 FORWARD LENGTH=485;; (*ITAG) Solyc12g005590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:313462-317617 transcript_region:SL2.40ch12:313462..317617- functional_description:"Transmembrane protein 34 (AHRD V1 *-*- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; NbS00023019g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|255569295|ref|XP_002525615.1| (e_value=5e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g054700.2.1 (e_value=9e-15) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00044203g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|206114251|gb|ACI05253.1| (e_value=9e-31) type I MADS box transcription factor [Petunia x hybrida];; (*SWP) sp|Q7XJK6|AGL36_ARATH (e_value=8e-12) Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1;; (*TAIR) AT5G06500.1 (e_value=3e-17) | Symbols: AGL96 | AGAMOUS-like 96 | chr5:1982444-1983172 FORWARD LENGTH=242;; (*ITAG) Solyc12g016170.1.1 (e_value=2e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:6258293-6258952 transcript_region:SL2.40ch12:6258293..6258952- go_terms:GO:0005634 functional_description:"Pheres1 (Fragment) (AHRD V1 *-*- B2BFQ7_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00055224g0003.1 protein AED:0.11 eAED:0.13 QI:0|0.8|0.33|1|1|1|6|0|687; (*GB) gi|356546820|ref|XP_003541820.1| (e_value=0.0) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max];; (*SWP) sp|Q9MAH1|TTL1_ARATH (e_value=0.0) TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1;; (*TAIR) AT1G53300.1 (e_value=0.0) | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like 1 | chr1:19879726-19882375 FORWARD LENGTH=699;; (*ITAG) Solyc07g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62483556-62487561 transcript_region:SL2.40ch07:62483556..62487561- go_terms:GO:0005488,GO:0045454 functional_description:"DnaJ homolog subfamily C member 7 (AHRD V1 *--- B5X1N5_SALSA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005488,GO:0045454 NbS00014985g0004.1 protein AED:0.33 eAED:0.77 QI:0|0|0|1|0|0|2|0|135; (*GB) gi|3336908|emb|CAA05884.1| (e_value=3e-38) maturase [Solanum tuberosum];; (*ITAG) ATMG00520.1 (e_value=3e-35) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc09g056070.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:42679284-42680773 transcript_region:SL2.40ch09:42679284..42680773- functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00021025g0004.1 protein AED:0.27 eAED:0.28 QI:0|0.4|0.33|1|0.6|0.66|6|0|499; (*GB) gi|225456422|ref|XP_002284252.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At3g26935 isoform 1 [Vitis vinifera];; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=0.0) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc06g072610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41164376-41170932 transcript_region:SL2.40ch06:41164376..41170932- go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00030693g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.75|0.4|1|0.5|0.4|5|0|345; (*GB) gi|225437241|ref|XP_002275598.1| (e_value=2e-148) PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=7e-95) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=5e-96) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc06g084040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45588705-45594967 transcript_region:SL2.40ch06:45588705..45594967- go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00030693g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|224126473|ref|XP_002329563.1| (e_value=2e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|O49686|PYR1_ARATH (e_value=1e-92) Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1;; (*TAIR) AT4G17870.1 (e_value=1e-93) | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191;; (*ITAG) Solyc06g061180.1.1 (e_value=1e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35573953-35574594 transcript_region:SL2.40ch06:35573953..35574594+ go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYR1 (AHRD V1 **-- PYR1_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00022967g0010.1 protein AED:0.33 eAED:0.35 QI:0|0|0.5|1|0|0|2|586|141; (*GB) gi|224079509|ref|XP_002305882.1| (e_value=2e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RC82|NMD3_PONAB (e_value=2e-20) 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1;; (*TAIR) AT2G03820.1 (e_value=5e-44) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc11g011780.1.1 (e_value=3e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4775185-4776693 transcript_region:SL2.40ch11:4775185..4776693+ functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; NbS00022967g0007.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.33|1|1|3|0|147; (*GB) gi|207091414|gb|ACI23376.1| (e_value=3e-25) unknown [Elaeis guineensis];; (*TAIR) AT1G32583.1 (e_value=1e-24) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11787351-11788103 FORWARD LENGTH=179;; (*ITAG) Solyc11g012650.1.1 (e_value=9e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5424760-5426139 transcript_region:SL2.40ch11:5424760..5426139- functional_description:"TPD1 (AHRD V1 *-*- Q6TLJ2_ARATH)"; NbS00022967g0008.1 protein AED:0.25 eAED:0.27 QI:39|0.61|0.77|0.95|0.76|0.86|22|0|821; (*GB) gi|225435754|ref|XP_002285720.1| (e_value=2e-177) PREDICTED: importin-5 [Vitis vinifera];; (*SWP) sp|Q8BKC5|IPO5_MOUSE (e_value=8e-78) Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3;; (*TAIR) AT5G19820.1 (e_value=3e-159) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc08g074460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55733336-55738996 transcript_region:SL2.40ch08:55733336..55738996+ go_terms:GO:0008536 functional_description:"Importin beta-3 (AHRD V1 **-- B0WUN0_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008536 NbS00022967g0009.1 protein AED:0.40 eAED:0.42 QI:0|0|0|0.66|0|0|3|0|275; (*GB) gi|225430590|ref|XP_002265288.1| (e_value=5e-153) PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera];; (*SWP) sp|Q55BF2|NMD3_DICDI (e_value=2e-96) 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1;; (*TAIR) AT2G03820.1 (e_value=1e-137) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc06g053800.1.1 (e_value=1e-156) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33148340-33149857 transcript_region:SL2.40ch06:33148340..33149857- go_terms:GO:0005515,GO:0043023 functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; GO:0005515,GO:0043023 NbS00003128g0013.1 protein AED:0.24 eAED:0.24 QI:178|0.63|0.75|1|0.72|0.66|12|374|682; (*GB) gi|225455868|ref|XP_002274587.1| (e_value=0.0) PREDICTED: lysosomal acid lipase/cholesteryl ester hydrolase-like [Vitis vinifera];; (*SWP) sp|Q3U4B4|LIPN_MOUSE (e_value=2e-22) Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1;; (*TAIR) AT1G73920.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27791194-27794698 FORWARD LENGTH=704;; (*ITAG) Solyc03g119720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62315920-62322564 transcript_region:SL2.40ch03:62315920..62322564+ go_terms:GO:0016298 functional_description:"Lipase family protein (AHRD V1 **** D7KGE3_ARALY); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0016298 NbS00003128g0011.1 protein AED:0.45 eAED:0.45 QI:257|0.5|0.33|1|1|0.66|3|0|56 NbS00003128g0009.1 protein AED:0.51 eAED:0.61 QI:0|0.25|0.4|0.6|0|0.2|5|151|162; (*GB) gi|225455880|ref|XP_002275327.1| (e_value=2e-31) PREDICTED: protein CASP [Vitis vinifera];; (*SWP) sp|Q9LS42|CASP_ARATH (e_value=2e-30) Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2;; (*TAIR) AT3G18480.1 (e_value=2e-31) | Symbols: AtCASP, CASP | CCAAT-displacement protein alternatively spliced product | chr3:6336924-6341596 FORWARD LENGTH=689;; (*ITAG) Solyc06g069210.2.1 (e_value=5e-32) genomic_reference:SL2.40ch06 gene_region:39360592-39372973 transcript_region:SL2.40ch06:39360592..39372973+ go_terms:GO:0003677,GO:0003682,GO:0016564 functional_description:"CASP-like protein (AHRD V1 ***- D0NFX2_PHYIN); contains Interpro domain(s) IPR012955 CASP, C-terminal "; GO:0003677,GO:0003682,GO:0016564 NbS00003128g0012.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.5|0.66|3|0|528; (*GB) gi|225455876|ref|XP_002275164.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=2e-173) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=1e-174) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc03g119690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62293271-62294875 transcript_region:SL2.40ch03:62293271..62294875- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JAA3_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00016468g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.28|0|0.87|1|1|8|0|513; (*GB) gi|224140629|ref|XP_002323684.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9Z7|Y3857_ARATH (e_value=7e-160) BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2;; (*TAIR) AT3G08570.1 (e_value=5e-161) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:2602258-2604412 REVERSE LENGTH=617;; (*ITAG) Solyc09g048980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:31491067-31492825 transcript_region:SL2.40ch09:31491067..31492825+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00000314g0004.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|514; (*GB) gi|225440934|ref|XP_002277025.1| (e_value=1e-30) PREDICTED: serine/threonine-protein kinase KIPK-like [Vitis vinifera];; (*SWP) sp|Q9LFA2|KIPK_ARATH (e_value=6e-12) Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1;; (*TAIR) AT5G03640.1 (e_value=9e-18) | Symbols: | Protein kinase superfamily protein | chr5:927915-930781 FORWARD LENGTH=926;; (*ITAG) Solyc09g009380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2812803-2817365 transcript_region:SL2.40ch09:2812803..2817365- go_terms:GO:0004672,GO:0005515 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q9LZS4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00000314g0014.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.68|0.96|0.86|0.88|51|606|3678; (*GB) gi|297736774|emb|CBI25975.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q709C8|VP13C_HUMAN (e_value=4e-26) Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1;; (*TAIR) AT1G48090.1 (e_value=0.0) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00000314g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|77; (*GB) gi|12229631|sp|O24145.1|4CL1_TOBAC (e_value=2e-16) RecName: Full=4-coumarate--CoA ligase 1; Short=4CL 1; AltName: Full=4-coumaroyl-CoA synthase 1;; (*SWP) sp|O24145|4CL1_TOBAC (e_value=5e-18) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*ITAG) Solyc03g117870.2.1 (e_value=4e-17) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00047656g0004.1 protein AED:0.01 eAED:0.01 QI:468|1|0.8|1|0.75|0.6|5|0|651; (*GB) gi|225468765|ref|XP_002272552.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g66560-like [Vitis vinifera];; (*SWP) sp|Q94A73|Y5656_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2;; (*TAIR) AT5G66560.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26564368-26566662 FORWARD LENGTH=668;; (*ITAG) Solyc02g090070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46291959-46294771 transcript_region:SL2.40ch02:46291959..46294771- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMF7_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00053861g0004.1 protein AED:0.19 eAED:0.19 QI:161|1|1|1|1|1|8|535|234; (*GB) gi|3024440|sp|P93395.1|PSB6_TOBAC (e_value=5e-163) RecName: Full=Proteasome subunit beta type-6; AltName: Full=Proteasome delta chain; AltName: Full=Tobacco cryptogein-induced protein 7; Short=tcI 7; Flags: Precursor;; (*SWP) sp|P93395|PSB6_TOBAC (e_value=1e-164) Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G31300.3 (e_value=1e-145) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233;; (*ITAG) Solyc07g016200.2.1 (e_value=3e-152) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00059156g0005.1 protein AED:0.24 eAED:0.24 QI:117|0.87|0.77|1|0.5|0.66|9|0|407; (*GB) gi|357487309|ref|XP_003613942.1| (e_value=6e-155) hypothetical protein MTR_5g042910 [Medicago truncatula];; (*TAIR) AT3G29180.2 (e_value=9e-138) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc02g088320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45032710-45036500 transcript_region:SL2.40ch02:45032710..45036500+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00007492g0014.1 protein AED:0.25 eAED:0.31 QI:0|0.33|0|1|0.66|0.5|4|0|1045; (*GB) gi|225451725|ref|XP_002276947.1| (e_value=7e-137) PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera];; (*TAIR) AT1G74160.1 (e_value=4e-81) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). | chr1:27887164-27891151 FORWARD LENGTH=1025;; (*ITAG) Solyc02g089050.2.1 (e_value=9e-171) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00007492g0016.1 protein AED:0.63 eAED:0.63 QI:0|0|0.33|0.33|0.5|0.33|3|18|77 NbS00007492g0002.1 protein AED:0.01 eAED:0.10 QI:0|-1|0|1|-1|1|1|112|364; (*GB) gi|147864648|emb|CAN79809.1| (e_value=5e-100) hypothetical protein VITISV_014912 [Vitis vinifera];; (*TAIR) AT3G02160.1 (e_value=5e-54) | Symbols: | Bromodomain transcription factor | chr3:394615-395808 FORWARD LENGTH=397;; (*ITAG) Solyc09g008150.1.1 (e_value=6e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1613203-1614324 transcript_region:SL2.40ch09:1613203..1614324- go_terms:GO:0003677 functional_description:"Transcription initiation factor TFIID subunit 8 (AHRD V1 *--- C0H851_SALSA); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; GO:0003677 NbS00007492g0009.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|1|1|2|0|1118; (*GB) gi|339790481|dbj|BAK52397.1| (e_value=0.0) leucine rich repeat receptor protein kinase 2 [Solanum pennellii];; (*SWP) sp|Q9S7I6|RPK2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1;; (*TAIR) AT3G02130.1 (e_value=0.0) | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein kinase 2 | chr3:380726-384181 FORWARD LENGTH=1151;; (*ITAG) Solyc03g059490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:27445978-27449355 transcript_region:SL2.40ch03:27445978..27449355+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000456g0017.1 protein AED:0.00 eAED:0.00 QI:55|1|0.66|1|0.5|0.33|3|270|218; (*GB) gi|297735016|emb|CBI17378.3| (e_value=4e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66230.1 (e_value=1e-19) | Symbols: | Chalcone-flavanone isomerase family protein | chr5:26462704-26463873 FORWARD LENGTH=329;; (*ITAG) Solyc02g062170.2.1 (e_value=1e-46) genomic_reference:SL2.40ch02 gene_region:28319317-28320630 transcript_region:SL2.40ch02:28319317..28320630+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000456g0021.1 protein AED:0.02 eAED:0.02 QI:34|0.83|0.57|1|0.66|0.57|7|10|658; (*GB) gi|147857702|emb|CAN80815.1| (e_value=2e-157) hypothetical protein VITISV_020466 [Vitis vinifera];; (*SWP) sp|Q6GPB5|ALKB5_XENLA (e_value=3e-12) Probable alpha-ketoglutarate-dependent dioxygenase ABH5 OS=Xenopus laevis GN=alkbh5 PE=2 SV=1;; (*TAIR) AT2G17970.3 (e_value=7e-133) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:7819116-7820787 REVERSE LENGTH=433;; (*ITAG) Solyc02g062180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28320935-28325265 transcript_region:SL2.40ch02:28320935..28325265- go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00000456g0014.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|334; (*GB) gi|167614481|gb|ABZ89800.1| (e_value=2e-106) pectin methylesterase-like protein [Taiwania cryptomerioides];; (*SWP) sp|O48711|PME12_ARATH (e_value=2e-101) Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1;; (*TAIR) AT2G26440.1 (e_value=2e-102) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11247407-11249407 FORWARD LENGTH=547;; (*ITAG) Solyc02g062150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28293893-28296506 transcript_region:SL2.40ch02:28293893..28296506- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00000456g0019.1 protein AED:0.23 eAED:0.23 QI:89|0.75|0.8|1|0.25|0.2|5|973|92; (*GB) gi|6831602|sp|Q9XHE4.1|RL37A_GOSHI (e_value=4e-55) RecName: Full=60S ribosomal protein L37a;; (*SWP) sp|Q9XHE4|RL37A_GOSHI (e_value=1e-56) 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=2e-55) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=1e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00000456g0006.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|225457949|ref|XP_002274505.1| (e_value=2e-34) PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=6e-29) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT4G36040.1 (e_value=5e-30) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17049708-17050193 REVERSE LENGTH=161;; (*ITAG) Solyc02g062160.1.1 (e_value=5e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28313777-28314241 transcript_region:SL2.40ch02:28313777..28314241- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00000456g0022.1 protein AED:0.16 eAED:0.38 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|297741843|emb|CBI33203.3| (e_value=4e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=2e-24) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*TAIR) AT2G07785.1 (e_value=2e-26) | Symbols: | NADH dehydrogenase family protein | chr2:3348114-3348413 FORWARD LENGTH=99;; (*ITAG) Solyc00g094530.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:15539927-15540316 transcript_region:SL2.40ch00:15539927..15540316- go_terms:GO:0016020 functional_description:"NADH-ubiquinone oxidoreductase chain 1 (AHRD V1 ***- Q5M9U6_TOBAC); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00000456g0109.1 protein AED:0.20 eAED:0.20 QI:215|1|1|1|0.6|0.66|6|685|132 NbS00008291g0006.1 protein AED:0.18 eAED:0.19 QI:36|0.70|0.67|1|0.51|0.42|28|0|1143; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A5ABH4|RGLB_ASPNC (e_value=3e-11) Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1;; (*TAIR) AT2G22620.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc11g011310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4355386-4362151 transcript_region:SL2.40ch11:4355386..4362151+ go_terms:GO:0030246 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246 NbS00008291g0101.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|82 NbS00008291g0207.1 protein AED:0.04 eAED:0.04 QI:169|1|1|1|1|1|5|164|359 NbS00008291g0208.1 protein AED:0.14 eAED:0.18 QI:22|0.33|0.25|1|0|0|4|0|366 NbS00041142g0007.1 protein AED:0.06 eAED:0.06 QI:43|0.83|0.71|1|1|0.71|7|518|2114; (*GB) gi|225459601|ref|XP_002285869.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=0.0) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00041142g0010.1 protein AED:0.21 eAED:0.21 QI:0|1|0.33|1|0.5|0.66|3|0|323; (*GB) gi|21105748|gb|AAM34773.1|AF509873_1 (e_value=4e-170) nam-like protein 10 [Petunia x hybrida];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=3e-138) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=3e-139) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc11g017470.1.1 (e_value=3e-171) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8422146-8423170 transcript_region:SL2.40ch11:8422146..8423170- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GU14_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00000911g0011.1 protein AED:0.12 eAED:0.13 QI:0|0.73|0.55|0.95|0.94|0.95|20|0|1089; (*GB) gi|224056978|ref|XP_002299105.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BKC5|IPO5_MOUSE (e_value=7e-120) Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00000911g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|387; (*GB) gi|225437663|ref|XP_002279193.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420-like [Vitis vinifera];; (*SWP) sp|Q9FZ19|PPR5_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2;; (*TAIR) AT1G02420.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:493683-495158 FORWARD LENGTH=491;; (*ITAG) Solyc11g071670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52157728-52159230 transcript_region:SL2.40ch11:52157728..52159230+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS86_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000911g0010.1 protein AED:0.26 eAED:0.27 QI:108|0.6|0.5|1|1|1|6|0|406; (*GB) gi|296084007|emb|CBI24395.3| (e_value=2e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G43590.1 (e_value=3e-22) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551;; (*ITAG) Solyc11g071690.1.1 (e_value=1e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52176483-52180827 transcript_region:SL2.40ch11:52176483..52180827- go_terms:GO:0008270 functional_description:"Cellular nucleic acid binding protein (AHRD V1 *--- Q5QJQ9_MOUSE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00021795g0015.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|1|0.5|0.66|3|0|356; (*GB) gi|255560920|ref|XP_002521473.1| (e_value=6e-65) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9CAG5|PUB7_ARATH (e_value=3e-12) U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1;; (*TAIR) AT5G14510.1 (e_value=5e-53) | Symbols: | ARM repeat superfamily protein | chr5:4678125-4679194 REVERSE LENGTH=327;; (*ITAG) Solyc02g067850.2.1 (e_value=7e-128) genomic_reference:SL2.40ch02 gene_region:32531978-32533497 transcript_region:SL2.40ch02:32531978..32533497- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7M6K3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00021795g0014.1 protein AED:0.04 eAED:0.04 QI:419|0.66|0.5|1|0.66|0.25|4|0|690; (*GB) gi|1200256|emb|CAA62476.1| (e_value=0.0) stpk1 protein kinase [Solanum tuberosum];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=0.0) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc02g067830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32524155-32527283 transcript_region:SL2.40ch02:32524155..32527283+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00021795g0010.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.5|0.75|0.66|0.75|4|505|166; (*GB) gi|707001|gb|AAB33256.1| (e_value=6e-57) Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum];; (*TAIR) AT5G40510.1 (e_value=1e-42) | Symbols: | Sucrase/ferredoxin-like family protein | chr5:16229277-16230798 FORWARD LENGTH=333;; (*ITAG) Solyc02g067840.2.1 (e_value=1e-70) genomic_reference:SL2.40ch02 gene_region:32527853-32531873 transcript_region:SL2.40ch02:32527853..32531873+ functional_description:"Sucrase/ferredoxin domain protein (AHRD V1 *--- A1CK27_ASPCL); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00004050g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.6|0.9|1|1|10|467|676; (*GB) gi|255556474|ref|XP_002519271.1| (e_value=8e-124) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G49580.1 (e_value=3e-102) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:20123823-20126813 REVERSE LENGTH=695;; (*ITAG) Solyc07g026810.2.1 (e_value=1e-166) genomic_reference:SL2.40ch07 gene_region:31740324-31752580 transcript_region:SL2.40ch07:31740324..31752580- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2KX40_9FIRM); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00004050g0002.1 protein AED:0.20 eAED:0.24 QI:0|0.66|0.25|1|1|1|4|0|381; (*GB) gi|225453096|ref|XP_002271492.1| (e_value=1e-88) PREDICTED: ell-associated factor Eaf isoform 1 [Vitis vinifera];; (*TAIR) AT1G71080.1 (e_value=5e-54) | Symbols: | RNA polymerase II transcription elongation factor | chr1:26809987-26811645 REVERSE LENGTH=326;; (*ITAG) Solyc02g091270.2.1 (e_value=5e-136) genomic_reference:SL2.40ch02 gene_region:47195986-47199820 transcript_region:SL2.40ch02:47195986..47199820+ functional_description:"ELL-associated factor 1 (AHRD V1 *-*- B0WGU2_CULQU); contains Interpro domain(s) IPR019194 ELL-associated factor "; NbS00004050g0013.1 protein AED:0.68 eAED:0.68 QI:119|0|0.5|0.5|0|0|2|0|66 NbS00004050g0010.1 protein AED:0.20 eAED:0.20 QI:128|1|1|1|0.8|0.66|6|380|295; (*GB) gi|225453100|ref|XP_002271649.1| (e_value=6e-145) PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SXJ6|CLPP3_ARATH (e_value=8e-137) ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1;; (*TAIR) AT1G66670.1 (e_value=6e-138) | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309;; (*ITAG) Solyc02g091280.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:47199858-47204562 transcript_region:SL2.40ch02:47199858..47204562- go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** B9H362_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00004050g0014.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|101; (*GB) gi|296087200|emb|CBI33574.3| (e_value=3e-22) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g091250.1.1 (e_value=3e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47188821-47189213 transcript_region:SL2.40ch02:47188821..47189213- functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00004050g0114.1 protein AED:0.00 eAED:0.00 QI:109|1|1|1|1|1|3|166|147 NbS00004050g0116.1 protein AED:0.21 eAED:0.23 QI:15|0|0|1|1|0.5|2|0|293 NbS00004050g0113.1 protein AED:0.25 eAED:0.32 QI:94|0.66|0.69|1|1|1|13|1015|422 NbS00004050g0115.1 protein AED:0.71 eAED:0.93 QI:0|0|0|0.5|1|1|4|0|210 NbS00004050g0101.1 protein AED:0.40 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|101 NbS00004050g0122.1 protein AED:0.42 eAED:0.42 QI:0|1|0.5|1|0|0|2|0|80 NbS00004050g0102.1 protein AED:0.36 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|144 NbS00019711g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.6|1|1|1|5|155|354; (*GB) gi|255565246|ref|XP_002523615.1| (e_value=4e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G42940.1 (e_value=4e-25) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc12g019190.1.1 (e_value=4e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:9495056-9496263 transcript_region:SL2.40ch12:9495056..9496263+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021301g0009.1 protein AED:0.04 eAED:0.04 QI:96|1|1|1|1|1|2|576|145; (*GB) gi|297820028|ref|XP_002877897.1| (e_value=5e-19) hypothetical protein ARALYDRAFT_485676 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=8e-17) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=5e-21) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc12g057020.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48457119-48458526 transcript_region:SL2.40ch12:48457119..48458526+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D0TLQ4_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00021301g0006.1 protein AED:0.37 eAED:0.37 QI:275|1|1|1|0|0.66|3|135|45 NbS00000963g0010.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|471; (*GB) gi|225442569|ref|XP_002279092.1| (e_value=0.0) PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00000963g0020.1 protein AED:0.11 eAED:0.11 QI:103|0.95|0.95|1|0.86|0.91|23|569|1024; (*GB) gi|359482607|ref|XP_002279773.2| (e_value=0.0) PREDICTED: regulator of telomere elongation helicase 1-like [Vitis vinifera];; (*SWP) sp|Q9NZ71|RTEL1_HUMAN (e_value=0.0) Regulator of telomere elongation helicase 1 OS=Homo sapiens GN=RTEL1 PE=1 SV=2;; (*TAIR) AT1G79950.1 (e_value=0.0) | Symbols: | RAD3-like DNA-binding helicase protein | chr1:30073580-30079537 FORWARD LENGTH=1040;; (*ITAG) Solyc03g120200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62704981-62718637 transcript_region:SL2.40ch03:62704981..62718637- go_terms:GO:0008026,GO:0016818,GO:0005524,GO:0006139 functional_description:"Regulator of telomere elongation helicase 1 homolog (AHRD V1 ***- RTEL1_AEDAE); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type "; GO:0008026,GO:0016818,GO:0005524,GO:0006139 NbS00000963g0008.1 protein AED:0.17 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|172; (*GB) gi|356526149|ref|XP_003531682.1| (e_value=4e-17) PREDICTED: uncharacterized protein LOC100816014 [Glycine max];; (*ITAG) Solyc03g120180.1.1 (e_value=8e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62696696-62697256 transcript_region:SL2.40ch03:62696696..62697256- functional_description:"Unknown Protein (AHRD V1)"; NbS00000963g0023.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.57|0.85|0.5|0.71|7|0|704; (*GB) gi|14423763|sp|Q9M7J4.1|MFP1_TOBAC (e_value=0.0) RecName: Full=MAR-binding filament-like protein 1-1;; (*SWP) sp|Q9M7J4|MFP1_TOBAC (e_value=0.0) MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1;; (*TAIR) AT3G16000.1 (e_value=1e-111) | Symbols: MFP1 | MAR binding filament-like protein 1 | chr3:5431041-5433613 REVERSE LENGTH=726;; (*ITAG) Solyc03g120230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62741263-62746412 transcript_region:SL2.40ch03:62741263..62746412+ go_terms:GO:0003677 functional_description:"MAR-binding filament-like protein 1 (AHRD V1 **** MFP1_SOLLC); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0003677 NbS00000963g0016.1 protein AED:0.15 eAED:0.15 QI:366|1|0.66|1|0.5|0.66|3|484|155; (*GB) gi|356526153|ref|XP_003531684.1| (e_value=6e-76) PREDICTED: protein SYS1 homolog [Glycine max];; (*SWP) sp|Q55E69|SYS1_DICDI (e_value=3e-33) Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1;; (*TAIR) AT1G79990.1 (e_value=2e-64) | Symbols: | structural molecules | chr1:30084522-30091949 FORWARD LENGTH=1135;; (*ITAG) Solyc03g120240.2.1 (e_value=4e-94) genomic_reference:SL2.40ch03 gene_region:62746908-62751403 transcript_region:SL2.40ch03:62746908..62751403+ go_terms:GO:0005515 functional_description:"SYS1 homolog (AHRD V1 ***- C1BHJ4_ONCMY); contains Interpro domain(s) IPR019185 Integral membrane protein SYS1-related "; GO:0005515 NbS00000963g0024.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|235; (*GB) gi|351721810|ref|NP_001236966.1| (e_value=2e-37) uncharacterized protein LOC100527503 [Glycine max];; (*TAIR) AT1G79960.1 (e_value=9e-26) | Symbols: ATOFP14, OFP14 | ovate family protein 14 | chr1:30079665-30080549 REVERSE LENGTH=294;; (*ITAG) Solyc03g120190.2.1 (e_value=1e-97) genomic_reference:SL2.40ch03 gene_region:62702469-62703598 transcript_region:SL2.40ch03:62702469..62703598+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00029647g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|0.5|0.33|3|0|246; (*GB) gi|147835623|emb|CAN66272.1| (e_value=2e-56) hypothetical protein VITISV_018033 [Vitis vinifera];; (*TAIR) AT5G01130.1 (e_value=8e-20) | Symbols: | Protein of unknown function (DUF674) | chr5:47642-49174 FORWARD LENGTH=452;; (*ITAG) Solyc06g069820.2.1 (e_value=1e-86) genomic_reference:SL2.40ch06 gene_region:39865279-39866356 transcript_region:SL2.40ch06:39865279..39866356+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00011501g0007.1 protein AED:0.06 eAED:0.06 QI:246|1|0.94|1|0.94|0.83|18|0|823; (*GB) gi|356570686|ref|XP_003553516.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100814487 [Glycine max];; (*SWP) sp|Q6NXD8|DEN5B_DANRE (e_value=2e-14) DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2;; (*TAIR) AT2G20320.1 (e_value=0.0) | Symbols: | DENN (AEX-3) domain-containing protein | chr2:8767082-8772271 FORWARD LENGTH=1029;; (*ITAG) Solyc06g083710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45345359-45358916 transcript_region:SL2.40ch06:45345359..45358916+ functional_description:"DENN domain containing protein expressed (AHRD V1 ***- Q10RU8_ORYSJ); contains Interpro domain(s) IPR001194 DENN "; NbS00015504g0001.1 protein AED:0.79 eAED:0.85 QI:0|0|0|0.4|1|1|5|0|154; (*GB) gi|2462736|gb|AAB71955.1| (e_value=5e-18) putative ADP-ribolylation factor [Arabidopsis thaliana];; (*SWP) sp|O48920|ARF_VIGUN (e_value=1e-18) ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3;; (*TAIR) AT1G10630.1 (e_value=9e-20) | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor A1F | chr1:3513189-3514230 REVERSE LENGTH=181;; (*ITAG) Solyc01g100870.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:82530325-82533925 transcript_region:SL2.40ch01:82530325..82533925- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q9M7P4_CAPAN); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00015504g0105.1 protein AED:0.15 eAED:0.19 QI:0|0.87|0.77|1|0.87|0.88|9|0|313 NbS00015504g0204.1 protein AED:0.31 eAED:0.33 QI:51|0.71|0.75|1|0.85|0.75|8|0|472 NbS00052258g0005.1 protein AED:0.28 eAED:0.28 QI:611|0.9|0.81|1|0.4|0.45|11|947|181; (*GB) gi|147821770|emb|CAN77163.1| (e_value=1e-73) hypothetical protein VITISV_029832 [Vitis vinifera];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=8e-32) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT2G21120.1 (e_value=3e-67) | Symbols: | Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328;; (*ITAG) Solyc10g054930.1.1 (e_value=3e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51599205-51603491 transcript_region:SL2.40ch10:51599205..51603491+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C5FBJ1_NANOT); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00013894g0015.1 protein AED:0.18 eAED:0.18 QI:0|0.89|0.9|1|0.68|0.7|20|0|1319; (*GB) gi|359494102|ref|XP_002276879.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243584 [Vitis vinifera];; (*SWP) sp|Q55FD6|Y8158_DICDI (e_value=5e-16) PHD finger-containing protein DDB_G0268158 OS=Dictyostelium discoideum GN=DDB_G0268158 PE=4 SV=1;; (*TAIR) AT5G55390.2 (e_value=0.0) | Symbols: EDM2 | ENHANCED DOWNY MILDEW 2 | chr5:22448152-22454414 REVERSE LENGTH=1297;; (*ITAG) Solyc10g006090.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:814243-825414 transcript_region:SL2.40ch10:814243..825414+ go_terms:GO:0003700 functional_description:"Genomic DNA chromosome 5 P1 clone MTE17 (AHRD V1 **-- Q9FJ71_ARATH); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00013894g0016.1 protein AED:0.17 eAED:0.17 QI:203|1|1|1|0.72|0.83|12|263|545; (*GB) gi|225460839|ref|XP_002276969.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 6-like [Vitis vinifera];; (*SWP) sp|O74462|TAF6_SCHPO (e_value=4e-98) Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1;; (*TAIR) AT1G04950.3 (e_value=0.0) | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIATED FACTOR II 59 | chr1:1403606-1407184 REVERSE LENGTH=549;; (*ITAG) Solyc10g006100.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:837357-845861 transcript_region:SL2.40ch10:837357..845861- go_terms:GO:0005515,GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 6 (AHRD V1 **** B6K6E4_SCHJY); contains Interpro domain(s) IPR011442 Protein of unknown function DUF1546 "; GO:0005515,GO:0003700 NbS00013894g0017.1 protein AED:0.44 eAED:0.45 QI:0|0.5|0.14|1|0|0.14|7|0|189; (*GB) gi|255542157|ref|XP_002512142.1| (e_value=1e-50) beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|A3C053|BGL29_ORYSJ (e_value=6e-45) Beta-glucosidase 29 OS=Oryza sativa subsp. japonica GN=BGLU29 PE=2 SV=2;; (*TAIR) AT2G44480.1 (e_value=1e-43) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359780-18363001 FORWARD LENGTH=517;; (*ITAG) Solyc10g045240.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27802696-27807712 transcript_region:SL2.40ch10:27802696..27807712+ go_terms:GO:0019137 functional_description:"Beta-glucosidase D4 (AHRD V1 ***- B2ZUU0_LOTJA); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0019137 NbS00013894g0018.1 protein AED:0.48 eAED:0.57 QI:0|0|0|1|0|0.5|2|0|80; (*GB) gi|147798970|emb|CAN77114.1| (e_value=9e-28) hypothetical protein VITISV_042191 [Vitis vinifera];; (*SWP) sp|Q7F9K4|BGL10_ORYSJ (e_value=5e-24) Beta-glucosidase 10 OS=Oryza sativa subsp. japonica GN=BGLU10 PE=2 SV=1;; (*TAIR) AT5G24550.1 (e_value=1e-19) | Symbols: BGLU32 | beta glucosidase 32 | chr5:8392059-8395302 REVERSE LENGTH=534;; (*ITAG) Solyc10g045240.1.1 (e_value=2e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27802696-27807712 transcript_region:SL2.40ch10:27802696..27807712+ go_terms:GO:0019137 functional_description:"Beta-glucosidase D4 (AHRD V1 ***- B2ZUU0_LOTJA); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0019137 NbS00013894g0019.1 protein AED:0.43 eAED:0.52 QI:0|0|0|1|0|0|6|0|241; (*GB) gi|224121022|ref|XP_002330884.1| (e_value=5e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|O64882|BGL17_ARATH (e_value=5e-50) Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1;; (*TAIR) AT2G44480.1 (e_value=4e-51) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359780-18363001 FORWARD LENGTH=517;; (*ITAG) Solyc10g045240.1.1 (e_value=6e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27802696-27807712 transcript_region:SL2.40ch10:27802696..27807712+ go_terms:GO:0019137 functional_description:"Beta-glucosidase D4 (AHRD V1 ***- B2ZUU0_LOTJA); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0019137 NbS00035393g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.2|1|0.75|0.6|5|0|482; (*GB) gi|225459971|ref|XP_002268401.1| (e_value=0.0) PREDICTED: cytochrome P450 734A1-like [Vitis vinifera];; (*SWP) sp|Q9ZW95|C7352_ARATH (e_value=2e-90) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A2 PE=1 SV=1;; (*TAIR) AT5G24910.1 (e_value=2e-146) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc06g082730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44735567-44738356 transcript_region:SL2.40ch06:44735567..44738356+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00035393g0011.1 protein AED:0.19 eAED:0.19 QI:54|1|1|1|0.66|0.75|4|129|219; (*GB) gi|254212161|gb|ACT65738.1| (e_value=1e-161) QM [Nicotiana benthamiana];; (*SWP) sp|P93847|RL10_SOLME (e_value=8e-159) 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=2e-144) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=2e-161) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00035393g0013.1 protein AED:0.04 eAED:0.04 QI:216|0.83|0.85|1|0.66|0.71|7|382|282; (*GB) gi|147766029|emb|CAN61397.1| (e_value=1e-134) hypothetical protein VITISV_015779 [Vitis vinifera];; (*SWP) sp|Q8GYR4|QKIL4_ARATH (e_value=5e-128) KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1;; (*TAIR) AT3G08620.1 (e_value=4e-129) | Symbols: | RNA-binding KH domain-containing protein | chr3:2617925-2620314 FORWARD LENGTH=283;; (*ITAG) Solyc06g082710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44722997-44726998 transcript_region:SL2.40ch06:44722997..44726998- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B4FN92_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00035393g0008.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|118482303|gb|ABK93078.1| (e_value=2e-33) unknown [Populus trichocarpa];; (*SWP) sp|P46269|QCR8_SOLTU (e_value=1e-34) Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G05370.1 (e_value=2e-32) | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590977-1591869 REVERSE LENGTH=72;; (*ITAG) Solyc06g082680.2.1 (e_value=5e-36) genomic_reference:SL2.40ch06 gene_region:44715736-44718295 transcript_region:SL2.40ch06:44715736..44718295- go_terms:GO:0008121 functional_description:"Cytochrome b-c1 complex subunit 8 (AHRD V1 **** D6BQP2_9ROSI); contains Interpro domain(s) IPR020101 Cytochrome b-c1 complex, subunit 8 "; GO:0008121 NbS00030056g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|0.66|0.5|4|0|362; (*GB) gi|224134490|ref|XP_002327418.1| (e_value=3e-108) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15820.1 (e_value=4e-108) | Symbols: ROD1 | phosphatidic acid phosphatase-related / PAP2-related | chr3:5351217-5353573 FORWARD LENGTH=301;; (*ITAG) Solyc03g116740.2.1 (e_value=5e-143) genomic_reference:SL2.40ch03 gene_region:60077887-60080770 transcript_region:SL2.40ch03:60077887..60080770- go_terms:GO:0004142 functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 ***- Q9LVZ7_ARATH)"; GO:0004142 NbS00030056g0008.1 protein AED:0.10 eAED:0.10 QI:177|0.96|0.92|1|0.88|0.85|27|365|1177; (*GB) gi|225442937|ref|XP_002265778.1| (e_value=0.0) PREDICTED: topless-related protein 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q27GK7|TPR4_ARATH (e_value=0.0) Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2;; (*TAIR) AT3G15880.2 (e_value=0.0) | Symbols: WSIP2, TPR4 | WUS-interacting protein 2 | chr3:5364454-5371869 REVERSE LENGTH=1137;; (*ITAG) Solyc03g116750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60083005-60092974 transcript_region:SL2.40ch03:60083005..60092974- go_terms:GO:0005515 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515 NbS00008705g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|147792812|emb|CAN68806.1| (e_value=1e-112) hypothetical protein VITISV_001078 [Vitis vinifera];; (*SWP) sp|O94264|YORF_SCHPO (e_value=5e-21) Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=2 SV=1;; (*TAIR) AT4G17410.2 (e_value=3e-94) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr4:9716360-9721642 FORWARD LENGTH=827;; (*ITAG) Solyc10g083150.1.1 (e_value=5e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62336627-62344862 transcript_region:SL2.40ch10:62336627..62344862- go_terms:GO:0005634,GO:0000151 functional_description:"Retinoblastoma-binding protein 6 (Fragment) (AHRD V1 *--- C7TZR6_SCHJA); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0000151 NbS00008705g0012.1 protein AED:0.22 eAED:0.22 QI:484|0.92|0.93|1|0.78|0.6|15|439|615; (*GB) gi|83284015|gb|ABC01915.1| (e_value=0.0) vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum];; (*SWP) sp|P93026|VSR1_ARATH (e_value=0.0) Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2;; (*TAIR) AT3G52850.1 (e_value=0.0) | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623;; (*ITAG) Solyc10g074980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58012185-58017901 transcript_region:SL2.40ch10:58012185..58017901+ go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor (AHRD V1 **** Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005515,GO:0009940 NbS00008705g0011.1 protein AED:0.05 eAED:0.05 QI:277|1|1|1|0.66|0.57|7|299|177; (*GB) gi|224053911|ref|XP_002298037.1| (e_value=5e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|A4XKC6|RUVX_CALS8 (e_value=6e-17) Putative Holliday junction resolvase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=Csac_1776 PE=3 SV=1;; (*TAIR) AT3G52905.1 (e_value=1e-61) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:19614142-19615471 REVERSE LENGTH=170;; (*ITAG) Solyc10g074990.1.1 (e_value=1e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58018490-58019867 transcript_region:SL2.40ch10:58018490..58019867- go_terms:GO:0003676,GO:0005737 functional_description:"GRF domain class transcription factor (AHRD V1 ***- D9ZIZ7_MALDO); contains Interpro domain(s) IPR005227 Resolvase, holliday junction-type, YqgF-like "; GO:0003676,GO:0005737 NbS00031583g0004.1 protein AED:0.61 eAED:0.61 QI:39|0|0|0.5|0|1|2|0|57 NbS00031583g0005.1 protein AED:0.57 eAED:0.77 QI:13|0|0|1|0|0|2|0|70; (*GB) gi|8439465|emb|CAB94202.1| (e_value=3e-29) GDP dissociation inhibitor [Solanum lycopersicum];; (*SWP) sp|P50397|GDIB_BOVIN (e_value=3e-15) Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3;; (*TAIR) AT5G09550.1 (e_value=5e-27) | Symbols: | GDP dissociation inhibitor family protein / Rab GTPase activator family protein | chr5:2963850-2966465 FORWARD LENGTH=445;; (*ITAG) Solyc01g105810.2.1 (e_value=6e-32) genomic_reference:SL2.40ch01 gene_region:85610091-85615976 transcript_region:SL2.40ch01:85610091..85615976+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab-GDP dissociation inhibitor (AHRD V1 **** A5CKE3_SOLLC); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00024338g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.66|0.5|4|0|254; (*GB) gi|118486007|gb|ABK94847.1| (e_value=4e-164) unknown [Populus trichocarpa];; (*SWP) sp|P43286|PIP21_ARATH (e_value=1e-153) Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=9e-155) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc10g084120.1.1 (e_value=3e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63096816-63098911 transcript_region:SL2.40ch10:63096816..63098911- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q2Z1Z2_PRUMU); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00024338g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|126 NbS00011480g0011.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|0.66|0.5|4|0|593; (*GB) gi|147828189|emb|CAN68625.1| (e_value=5e-144) hypothetical protein VITISV_010683 [Vitis vinifera];; (*TAIR) AT5G04860.1 (e_value=5e-90) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1411760-1414459 REVERSE LENGTH=782;; (*ITAG) Solyc08g059710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:41993926-41997184 transcript_region:SL2.40ch08:41993926..41997184- functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 *-*- Q9FMC4_ARATH)"; NbS00011480g0008.1 protein AED:0.30 eAED:0.30 QI:164|1|1|1|0.75|0.6|5|250|89; (*GB) gi|224103657|ref|XP_002313142.1| (e_value=5e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01640.2 (e_value=3e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr2:283085-284034 FORWARD LENGTH=156;; (*ITAG) Solyc12g056030.1.1 (e_value=5e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:47353478-47357871 transcript_region:SL2.40ch12:47353478..47357871+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027738g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|357|262; (*GB) gi|363807364|ref|NP_001242632.1| (e_value=1e-41) uncharacterized protein LOC100811705 precursor [Glycine max];; (*SWP) sp|Q93V72|E13L4_ARATH (e_value=2e-32) Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1;; (*TAIR) AT1G18650.1 (e_value=7e-38) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc01g010310.2.1 (e_value=4e-58) genomic_reference:SL2.40ch01 gene_region:5134694-5138389 transcript_region:SL2.40ch01:5134694..5138389- functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 *-*- B6UAN6_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00016086g0010.1 protein AED:0.21 eAED:0.21 QI:20|0.9|0.90|1|0.5|0.54|11|0|742; (*GB) gi|296086860|emb|CBI33027.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FPS9|UBP15_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2;; (*TAIR) AT1G17110.1 (e_value=0.0) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=924;; (*ITAG) Solyc07g061780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00016086g0007.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|233; (*GB) gi|388493350|gb|AFK34741.1| (e_value=5e-82) unknown [Medicago truncatula];; (*SWP) sp|Q9Y5Z4|HEBP2_HUMAN (e_value=3e-21) Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1;; (*TAIR) AT1G17100.1 (e_value=6e-76) | Symbols: | SOUL heme-binding family protein | chr1:5844766-5845539 FORWARD LENGTH=232;; (*ITAG) Solyc07g061790.2.1 (e_value=5e-115) genomic_reference:SL2.40ch07 gene_region:61964267-61965352 transcript_region:SL2.40ch07:61964267..61965352- go_terms:GO:0020037 functional_description:"Heme-binding protein 2 (AHRD V1 **** B6T0C0_MAIZE); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0020037 NbS00034313g0006.1 protein AED:0.16 eAED:0.16 QI:110|0.25|0.6|1|0.25|0.4|5|100|230; (*GB) gi|224118802|ref|XP_002317910.1| (e_value=7e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|A4D998|BH075_ARATH (e_value=2e-24) Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1;; (*TAIR) AT1G25330.1 (e_value=1e-25) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:8880515-8882018 REVERSE LENGTH=223;; (*ITAG) Solyc12g036470.1.1 (e_value=5e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31329027-31331264 transcript_region:SL2.40ch12:31329027..31331264+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00034313g0005.1 protein AED:0.03 eAED:0.03 QI:137|1|0.87|1|0.85|0.75|8|433|382; (*GB) gi|356513105|ref|XP_003525254.1| (e_value=5e-58) PREDICTED: uncharacterized protein LOC100811481 [Glycine max];; (*TAIR) AT1G73840.1 (e_value=3e-37) | Symbols: ESP1 | hydroxyproline-rich glycoprotein family protein | chr1:27763937-27766328 REVERSE LENGTH=388;; (*ITAG) Solyc03g119460.2.1 (e_value=4e-52) genomic_reference:SL2.40ch03 gene_region:62122428-62126103 transcript_region:SL2.40ch03:62122428..62126103- functional_description:"Cleavage stimulation factor like protein (AHRD V1 ***- Q9M9G6_ARATH)"; NbS00011670g0009.1 protein AED:0.12 eAED:0.15 QI:0|0|0|0.66|0.5|0.66|3|0|437; (*GB) gi|1040729|emb|CAA60621.1| (e_value=0.0) delta-8 sphingolipid desaturase [Helianthus annuus];; (*SWP) sp|A4UVI1|FADS1_PAPAN (e_value=1e-35) Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc10g011820.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4067042-4068832 transcript_region:SL2.40ch10:4067042..4068832+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6 desaturase (AHRD V1 **** D2KBG7_RIBNI); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00011670g0010.1 protein AED:0.21 eAED:0.21 QI:1078|0.44|0.4|1|0.33|0.3|10|0|380; (*GB) gi|296083795|emb|CBI24012.3| (e_value=3e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|O97594|SMC3_BOVIN (e_value=7e-52) Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1;; (*TAIR) AT2G27170.2 (e_value=3e-123) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=5e-149) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00011073g0003.1 protein AED:0.12 eAED:0.12 QI:1503|0.77|0.7|1|0.11|0.1|10|712|248; (*GB) gi|297740277|emb|CBI30459.3| (e_value=2e-118) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37940.1 (e_value=1e-110) | Symbols: AtIPCS2 | Arabidopsis Inositol phosphorylceramide synthase 2 | chr2:15877169-15879411 FORWARD LENGTH=305;; (*ITAG) Solyc10g084990.1.1 (e_value=9e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63661451-63664805 transcript_region:SL2.40ch10:63661451..63664805+ functional_description:"Phosphatidylcholine:ceramide cholinephosphotransferase 1 (AHRD V1 *--- SMS1_RAT)"; NbS00025663g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|92; (*ITAG) Solyc01g058710.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:60769677-60771321 transcript_region:SL2.40ch01:60769677..60771321+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011478g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|125 NbS00002610g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.8|1|1|1|5|0|395; (*GB) gi|224106001|ref|XP_002314008.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY82|FB121_ARATH (e_value=6e-146) F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1;; (*TAIR) AT2G32560.1 (e_value=5e-147) | Symbols: | F-box family protein | chr2:13824820-13826761 FORWARD LENGTH=371;; (*ITAG) Solyc11g065000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47407870-47411425 transcript_region:SL2.40ch11:47407870..47411425+ functional_description:"F-box family protein (AHRD V1 ***- B9GG65_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00002610g0002.1 protein AED:0.10 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|307; (*GB) gi|147858665|emb|CAN78684.1| (e_value=5e-22) hypothetical protein VITISV_043890 [Vitis vinifera];; (*TAIR) AT2G26530.1 (e_value=2e-11) | Symbols: AR781 | Protein of unknown function (DUF1645) | chr2:11283036-11283989 REVERSE LENGTH=317;; (*ITAG) Solyc11g065010.1.1 (e_value=9e-134) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:47412113-47413156 transcript_region:SL2.40ch11:47412113..47413156- functional_description:"AR781 (AHRD V1 *-*- O48720_ARATH)"; NbS00008542g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|0.66|1|0.66|3|0|183; (*GB) gi|255583391|ref|XP_002532456.1| (e_value=2e-63) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT5G12230.1 (e_value=2e-53) | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3953915-3955285 REVERSE LENGTH=221;; (*ITAG) Solyc09g020010.1.1 (e_value=2e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:18306228-18307942 transcript_region:SL2.40ch09:18306228..18307942- functional_description:"Genomic DNA chromosome 5 P1 clone MXC9 (AHRD V1 *-*- Q9FMP0_ARATH)"; NbS00016127g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.75|1|0.66|0.5|4|341|285; (*GB) gi|2826769|emb|CAA67119.1| (e_value=0.0) ACC oxidase [Nicotiana tabacum];; (*SWP) sp|Q08507|ACCO3_PETHY (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1;; (*TAIR) AT1G05010.1 (e_value=9e-143) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc07g049530.2.1 (e_value=4e-178) genomic_reference:SL2.40ch07 gene_region:57154220-57156391 transcript_region:SL2.40ch07:57154220..57156391+ go_terms:GO:0005507 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q94F66_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0005507 NbS00016127g0011.1 protein AED:0.25 eAED:0.37 QI:45|0|0|1|0|0|2|0|106; (*GB) gi|132861|sp|P21434.1|RK2_NICDE (e_value=2e-28) RecName: Full=50S ribosomal protein L2, chloroplastic;; (*SWP) sp|P21434|RK2_NICDE (e_value=5e-30) 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=4e-14) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=9e-13) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00006199g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|536; (*GB) gi|159141802|gb|ABK63964.2| (e_value=0.0) PT3 [Nicotiana tabacum];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=0.0) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g090080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64981619-64983223 transcript_region:SL2.40ch09:64981619..64983223+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00006199g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|547; (*GB) gi|8248034|gb|AAF74025.1|AF156696_1 (e_value=0.0) inorganic phosphate transporter [Nicotiana tabacum];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=0.0) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=0.0) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc09g090070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00014862g0014.1 protein AED:0.02 eAED:0.05 QI:0|0.75|0.4|1|0|0.2|5|0|385; (*GB) gi|225445767|ref|XP_002274323.1| (e_value=1e-131) PREDICTED: progestin and adipoq receptor-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=2e-31) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT4G30850.2 (e_value=8e-124) | Symbols: HHP2 | heptahelical transmembrane protein2 | chr4:15020540-15022278 REVERSE LENGTH=358;; (*ITAG) Solyc07g006020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:862865-866795 transcript_region:SL2.40ch07:862865..866795+ go_terms:GO:0004872,GO:0046872 functional_description:"Adiponectin receptor (AHRD V1 **** Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872,GO:0046872 NbS00014862g0017.1 protein AED:0.16 eAED:0.18 QI:0|0.52|0.44|0.88|0.58|0.55|18|0|1603; (*GB) gi|359484809|ref|XP_003633167.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257033 [Vitis vinifera];; (*SWP) sp|B4MY63|K0664_DROWI (e_value=9e-15) Protein KIAA0664 homolog OS=Drosophila willistoni GN=GK22132 PE=3 SV=1;; (*TAIR) AT4G28080.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13948993-13957840 REVERSE LENGTH=1819;; (*ITAG) Solyc07g006030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:866918-880889 transcript_region:SL2.40ch07:866918..880889- go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00014862g0010.1 protein AED:0.21 eAED:0.26 QI:137|0.66|0.5|1|1|1|4|0|411; (*GB) gi|225445772|ref|XP_002273237.1| (e_value=4e-135) PREDICTED: uncharacterized protein LOC100251872 [Vitis vinifera];; (*TAIR) AT4G30840.1 (e_value=5e-135) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:15017831-15019709 REVERSE LENGTH=361;; (*ITAG) Solyc07g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:852663-856740 transcript_region:SL2.40ch07:852663..856740- functional_description:"Nucleoporin Nup43 (AHRD V1 *-*- NUP43_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00014862g0009.1 protein AED:0.30 eAED:0.30 QI:176|1|1|1|0.33|0.25|4|218|155; (*GB) gi|351725085|ref|NP_001237080.1| (e_value=3e-32) uncharacterized protein LOC100305559 [Glycine max];; (*SWP) sp|P23326|RK35_SPIOL (e_value=4e-29) 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1;; (*TAIR) AT2G24090.1 (e_value=1e-28) | Symbols: | Ribosomal protein L35 | chr2:10242038-10243416 FORWARD LENGTH=145;; (*ITAG) Solyc07g006000.2.1 (e_value=3e-54) genomic_reference:SL2.40ch07 gene_region:847789-852012 transcript_region:SL2.40ch07:847789..852012- go_terms:GO:0005840 functional_description:"50S ribosomal protein L35 (AHRD V1 *-*- D7LGR4_ARALY); contains Interpro domain(s) IPR001706 Ribosomal protein L35 "; GO:0005840 NbS00014862g0013.1 protein AED:0.37 eAED:0.39 QI:0|0|0.5|1|0|0|2|124|70; (*TAIR) AT4G30845.1 (e_value=2e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15019895-15020319 FORWARD LENGTH=114;; (*ITAG) Solyc07g006040.2.1 (e_value=3e-19) genomic_reference:SL2.40ch07 gene_region:889320-890200 transcript_region:SL2.40ch07:889320..890200- functional_description:"Unknown Protein (AHRD V1)"; NbS00045876g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00004166g0010.1 protein AED:0.19 eAED:0.19 QI:297|0.75|0.6|1|0.75|0.8|5|0|347; (*GB) gi|225439795|ref|XP_002276631.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 38-like [Vitis vinifera];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=0.0) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc10g084410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63285651-63287625 transcript_region:SL2.40ch10:63285651..63287625- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L0I6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00004166g0008.1 protein AED:0.19 eAED:0.19 QI:236|0.5|0.33|0.66|0.5|0.66|3|0|71; (*GB) gi|224100879|ref|XP_002312050.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SK74|C3H21_ARATH (e_value=7e-34) Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1;; (*TAIR) AT2G20280.1 (e_value=5e-35) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:8740054-8742349 REVERSE LENGTH=371;; (*ITAG) Solyc09g007230.2.1 (e_value=7e-33) genomic_reference:SL2.40ch09 gene_region:832874-838682 transcript_region:SL2.40ch09:832874..838682+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 15 (AHRD V1 *-*- B9ELB3_SALSA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00004166g0002.1 protein AED:0.10 eAED:0.10 QI:9|1|1|1|0.8|0.66|6|330|491; (*GB) gi|255568452|ref|XP_002525200.1| (e_value=4e-156) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZUU0|WRK44_ARATH (e_value=4e-85) WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2;; (*TAIR) AT2G37260.1 (e_value=3e-86) | Symbols: TTG2, ATWRKY44, WRKY44, DSL1 | WRKY family transcription factor family protein | chr2:15645277-15646792 FORWARD LENGTH=429;; (*ITAG) Solyc10g084380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63276460-63279065 transcript_region:SL2.40ch10:63276460..63279065+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 42 (Fragment) (AHRD V1 **-- B2KJ82_HORVD); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00025703g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|116778782|gb|ABK20993.1| (e_value=3e-95) unknown [Picea sitchensis];; (*SWP) sp|P46293|RS16_GOSHI (e_value=1e-93) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=8e-93) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc05g005690.1.1 (e_value=4e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:510033-510476 transcript_region:SL2.40ch05:510033..510476- go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00025703g0006.1 protein AED:0.11 eAED:0.11 QI:150|1|1|1|1|1|4|470|316; (*GB) gi|76786474|gb|ABA54988.1| (e_value=3e-163) xyloglucan endotransglycosylase hydrolase [Apium graveolens];; (*SWP) sp|Q8LC45|XTH33_ARATH (e_value=5e-131) Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2;; (*TAIR) AT1G10550.1 (e_value=4e-132) | Symbols: XTH33, XET | xyloglucan:xyloglucosyl transferase 33 | chr1:3479257-3480957 REVERSE LENGTH=310;; (*ITAG) Solyc05g005680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:506438-508385 transcript_region:SL2.40ch05:506438..508385+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** D5HP44_9ROSA); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00038686g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|1|1|2|0|72; (*ITAG) Solyc04g009600.2.1 (e_value=5e-26) genomic_reference:SL2.40ch04 gene_region:2991227-2993911 transcript_region:SL2.40ch04:2991227..2993911+ go_terms:GO:0008270 functional_description:"TRAF-type zinc finger family protein (AHRD V1 *--- Q2QWV7_ORYSJ); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00038686g0008.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0|0|2|0|377; (*GB) gi|225441571|ref|XP_002276694.1| (e_value=5e-114) PREDICTED: uncharacterized protein LOC100246957 [Vitis vinifera];; (*TAIR) AT3G11950.2 (e_value=2e-107) | Symbols: | TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572;; (*ITAG) Solyc04g009600.2.1 (e_value=8e-175) genomic_reference:SL2.40ch04 gene_region:2991227-2993911 transcript_region:SL2.40ch04:2991227..2993911+ go_terms:GO:0008270 functional_description:"TRAF-type zinc finger family protein (AHRD V1 *--- Q2QWV7_ORYSJ); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00023233g0012.1 protein AED:0.01 eAED:0.03 QI:277|0.88|0.6|1|0.88|0.8|10|0|1262; (*GB) gi|225461373|ref|XP_002282015.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252162 [Vitis vinifera];; (*TAIR) AT4G27430.2 (e_value=1e-130) | Symbols: CIP7 | COP1-interacting protein 7 | chr4:13718817-13722736 FORWARD LENGTH=1058;; (*ITAG) Solyc07g063350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63062786-63067580 transcript_region:SL2.40ch07:63062786..63067580- go_terms:GO:0016563 functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *-*- Q7GDB1_ARATH)"; GO:0016563 NbS00023233g0101.1 protein AED:0.48 eAED:0.67 QI:8|0|0.33|1|1|1|3|0|162 NbS00037612g0001.1 protein AED:0.02 eAED:0.05 QI:0|0|0|1|1|1|2|0|645; (*GB) gi|225432528|ref|XP_002277614.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244329 [Vitis vinifera];; (*TAIR) AT3G06150.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861971-1863755 REVERSE LENGTH=594;; (*ITAG) Solyc01g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71794005-71796554 transcript_region:SL2.40ch01:71794005..71796554- functional_description:"Unknown Protein (AHRD V1)"; NbS00028709g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|225424995|ref|XP_002267025.1| (e_value=8e-25) PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera];; (*TAIR) AT2G03890.1 (e_value=7e-21) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650;; (*ITAG) Solyc04g005270.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:196342-198264 transcript_region:SL2.40ch04:196342..198264- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00028709g0010.1 protein AED:0.33 eAED:0.36 QI:245|0.5|0.64|1|0.75|0.64|17|315|721; (*GB) gi|350537659|ref|NP_001234047.1| (e_value=0.0) COP1 homolog [Solanum lycopersicum];; (*SWP) sp|P43254|COP1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT2G32950.1 (e_value=0.0) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc12g005950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:576268-587430 transcript_region:SL2.40ch12:576268..587430- go_terms:GO:0008270 functional_description:"WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00028709g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|379056248|dbj|BAL68164.1| (e_value=5e-104) ethylene response factor #44 [Nicotiana tabacum];; (*SWP) sp|Q9ZWA2|ERF77_ARATH (e_value=4e-18) Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1;; (*TAIR) AT1G03800.1 (e_value=3e-19) | Symbols: ERF10, ATERF10 | ERF domain protein 10 | chr1:957261-957998 REVERSE LENGTH=245;; (*ITAG) Solyc12g005960.1.1 (e_value=5e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:591366-591947 transcript_region:SL2.40ch12:591366..591947- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00035975g0009.1 protein AED:0.33 eAED:0.33 QI:133|1|0.66|1|0.6|0.66|6|0|171; (*GB) gi|356560817|ref|XP_003548683.1| (e_value=5e-46) PREDICTED: U2 snRNP-associated SURP motif-containing protein-like [Glycine max];; (*TAIR) AT5G25060.1 (e_value=9e-42) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=5e-68) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00010709g0001.1 protein AED:0.25 eAED:0.27 QI:473|1|0.5|1|0|0|2|0|243; (*GB) gi|255545596|ref|XP_002513858.1| (e_value=1e-116) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q07G10|ALKB8_XENTR (e_value=2e-50) Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2;; (*TAIR) AT1G36310.2 (e_value=5e-106) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:13669644-13670934 FORWARD LENGTH=404;; (*ITAG) Solyc04g072390.2.1 (e_value=3e-154) genomic_reference:SL2.40ch04 gene_region:57012675-57014952 transcript_region:SL2.40ch04:57012675..57014952+ go_terms:GO:0008152 functional_description:"Alkylated DNA repair protein alkB 8 (AHRD V1 *--- D0MUQ0_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00010709g0002.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|1|1|2|0|105; (*GB) gi|255545596|ref|XP_002513858.1| (e_value=5e-40) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*TAIR) AT1G36310.2 (e_value=6e-37) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:13669644-13670934 FORWARD LENGTH=404;; (*ITAG) Solyc04g072390.2.1 (e_value=3e-52) genomic_reference:SL2.40ch04 gene_region:57012675-57014952 transcript_region:SL2.40ch04:57012675..57014952+ go_terms:GO:0008152 functional_description:"Alkylated DNA repair protein alkB 8 (AHRD V1 *--- D0MUQ0_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00010709g0007.1 protein AED:0.71 eAED:0.71 QI:0|0.33|0|0.5|0.66|0.75|4|0|119; (*GB) gi|356548504|ref|XP_003542641.1| (e_value=4e-31) PREDICTED: uncharacterized protein LOC100813297 [Glycine max];; (*TAIR) AT4G08540.1 (e_value=1e-32) | Symbols: | DNA-directed RNA polymerase II protein | chr4:5433760-5436326 FORWARD LENGTH=473;; (*ITAG) Solyc04g072440.2.1 (e_value=1e-42) genomic_reference:SL2.40ch04 gene_region:57042643-57050951 transcript_region:SL2.40ch04:57042643..57050951+ functional_description:"MRNA complete cds clone RAFL23-27-B01 (AHRD V1 **-- Q67Z09_ARATH)"; NbS00015369g0004.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|2|0|504; (*GB) gi|224097888|ref|XP_002334584.1| (e_value=6e-172) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q6J540|C79D4_LOTJA (e_value=8e-163) Isoleucine N-monooxygenase 2 OS=Lotus japonicus GN=CYP79D4 PE=1 SV=1;; (*TAIR) AT5G05260.1 (e_value=1e-157) | Symbols: CYP79A2 | cytochrome p450 79a2 | chr5:1559778-1561765 REVERSE LENGTH=523;; (*ITAG) Solyc12g005170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:119882-122005 transcript_region:SL2.40ch12:119882..122005- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00041244g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|1|0.83|6|0|924; (*GB) gi|147779903|emb|CAN65841.1| (e_value=0.0) hypothetical protein VITISV_009619 [Vitis vinifera];; (*SWP) sp|O94387|YGSA_SCHPO (e_value=1e-84) Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=2 SV=1;; (*TAIR) AT4G30100.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:14714191-14719335 FORWARD LENGTH=1311;; (*ITAG) Solyc04g072830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57381284-57385016 transcript_region:SL2.40ch04:57381284..57385016- functional_description:"Helicase sen1 (AHRD V1 *--- B6K5E8_SCHJY)"; NbS00041244g0003.1 protein AED:0.67 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|73 NbS00035318g0006.1 protein AED:0.05 eAED:0.05 QI:0|0.92|0.78|1|0.76|0.71|14|384|623; (*GB) gi|225448645|ref|XP_002274437.1| (e_value=0.0) PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera];; (*SWP) sp|Q501D5|MCMBP_ARATH (e_value=0.0) Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1;; (*TAIR) AT2G40550.1 (e_value=0.0) | Symbols: ETG1 | E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589;; (*ITAG) Solyc06g050200.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:29165221-29167063 transcript_region:SL2.40ch06:29165221..29167063+ functional_description:"UPF0557 protein C10orf119 homolog (AHRD V1 ***- CJ119_BOVIN); contains Interpro domain(s) IPR019140 Protein of unknown function DUF2044, membrane "; NbS00003862g0001.1 protein AED:0.17 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|426; (*GB) gi|225441479|ref|XP_002279934.1| (e_value=8e-109) PREDICTED: uncharacterized protein LOC100260713 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=2e-22) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT3G58030.4 (e_value=5e-84) | Symbols: | RING/U-box superfamily protein | chr3:21485527-21486837 FORWARD LENGTH=436;; (*ITAG) Solyc10g078900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59881418-59882647 transcript_region:SL2.40ch10:59881418..59882647+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *--- B6SUD6_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003862g0014.1 protein AED:0.34 eAED:0.34 QI:169|0.6|0.66|1|0.6|0.5|6|221|157; (*GB) gi|224138110|ref|XP_002322732.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FG36|TRL31_ARATH (e_value=4e-60) Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3;; (*TAIR) AT5G06690.1 (e_value=3e-61) | Symbols: WCRKC1 | WCRKC thioredoxin 1 | chr5:2060651-2061956 REVERSE LENGTH=210;; (*ITAG) Solyc10g078920.1.1 (e_value=4e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59894275-59896223 transcript_region:SL2.40ch10:59894275..59896223+ go_terms:GO:0045454 functional_description:"Thioredoxin-like 5 (AHRD V1 ***- A6N1I7_ORYSI); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00003862g0017.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.66|1|0.5|0.66|3|86|386; (*GB) gi|225441489|ref|XP_002280154.1| (e_value=2e-158) PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 isoform 1 [Vitis vinifera];; (*SWP) sp|O95433|AHSA1_HUMAN (e_value=5e-43) Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1;; (*TAIR) AT3G12050.1 (e_value=1e-157) | Symbols: | Aha1 domain-containing protein | chr3:3839289-3841303 FORWARD LENGTH=360;; (*ITAG) Solyc10g078930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59896781-59900058 transcript_region:SL2.40ch10:59896781..59900058- go_terms:GO:0051087,GO:0001671 functional_description:"Activator of heat shock protein ATPase homolog 1 (AHRD V1 **-* D3PJW3_9MAXI); contains Interpro domain(s) IPR015310 Activator of Hsp90 ATPase, N-terminal "; GO:0051087,GO:0001671 NbS00003862g0016.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.2|0.8|0.25|0.2|5|0|500; (*GB) gi|42567700|ref|NP_568173.2| (e_value=2e-112) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G06700.1 (e_value=4e-115) | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608;; (*ITAG) Solyc10g078910.1.1 (e_value=4e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59885741-59889349 transcript_region:SL2.40ch10:59885741..59889349- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003862g0015.1 protein AED:0.43 eAED:0.67 QI:0|0|0|1|0|0|3|0|198; (*ITAG) Solyc10g078910.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59885741-59889349 transcript_region:SL2.40ch10:59885741..59889349- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026594g0003.1 protein AED:0.35 eAED:0.35 QI:187|1|0.8|1|0.75|0.8|5|0|92; (*GB) gi|225427377|ref|XP_002282974.1| (e_value=4e-60) PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera];; (*SWP) sp|Q9XHE4|RL37A_GOSHI (e_value=2e-60) 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=1e-59) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=8e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00015767g0013.1 protein AED:0.36 eAED:0.40 QI:0|0.7|0.45|0.90|0.6|0.54|11|0|326; (*GB) gi|82400144|gb|ABB72811.1| (e_value=2e-60) putative arginine/serine-rich protein [Solanum tuberosum];; (*SWP) sp|Q6PG31|RNPS1_DANRE (e_value=2e-15) RNA-binding protein with serine-rich domain 1 OS=Danio rerio GN=rnps1 PE=2 SV=1;; (*TAIR) AT1G16610.1 (e_value=3e-40) | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | chr1:5675925-5678686 REVERSE LENGTH=414;; (*ITAG) Solyc10g005590.2.1 (e_value=5e-64) genomic_reference:SL2.40ch10 gene_region:474076-480779 transcript_region:SL2.40ch10:474076..480779- go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear cap-binding protein subunit 2 (AHRD V1 *--- NCBP2_CHICK); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00015767g0014.1 protein AED:0.79 eAED:1.00 QI:9|0|0|1|1|1|2|30|76 NbS00015767g0012.1 protein AED:0.25 eAED:0.25 QI:76|0.62|0.77|0.88|0.75|0.88|9|0|381; (*GB) gi|255544664|ref|XP_002513393.1| (e_value=6e-124) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G16520.1 (e_value=6e-93) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325;; (*ITAG) Solyc10g005580.2.1 (e_value=7e-163) genomic_reference:SL2.40ch10 gene_region:468296-473106 transcript_region:SL2.40ch10:468296..473106- functional_description:"Os03g0659800 protein (Fragment) (AHRD V1 *-*- Q0DPV3_ORYSJ)"; NbS00015767g0002.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.33|1|1|3|0|119 NbS00024978g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|239; (*GB) gi|225441417|ref|XP_002278955.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100260592 [Vitis vinifera];; (*TAIR) AT3G57990.1 (e_value=1e-34) | Symbols: | unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). | chr3:21470244-21471347 REVERSE LENGTH=367;; (*ITAG) Solyc10g080470.1.1 (e_value=4e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61057242-61058297 transcript_region:SL2.40ch10:61057242..61058297- functional_description:"Unknown Protein (AHRD V1)"; NbS00024978g0006.1 protein AED:0.23 eAED:0.29 QI:0|0|0|0.25|0.33|0.75|4|0|252; (*GB) gi|47825035|gb|AAT38805.1| (e_value=4e-19) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=9e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014666g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|1|0.75|0.6|5|182|217; (*GB) gi|730558|sp|P41098.1|RL34_TOBAC (e_value=4e-59) RecName: Full=60S ribosomal protein L34;; (*SWP) sp|P41098|RL34_TOBAC (e_value=1e-60) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G26880.1 (e_value=1e-58) | Symbols: | Ribosomal protein L34e superfamily protein | chr1:9315640-9316681 REVERSE LENGTH=120;; (*ITAG) Solyc05g007560.2.1 (e_value=4e-60) genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00014666g0007.1 protein AED:0.17 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|334; (*GB) gi|224118242|ref|XP_002331505.1| (e_value=4e-145) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=6e-104) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT1G26870.1 (e_value=5e-105) | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425;; (*ITAG) Solyc02g087920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44750151-44751604 transcript_region:SL2.40ch02:44750151..44751604+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00014666g0004.1 protein AED:0.67 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|70 NbS00058283g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|5360263|dbj|BAA81904.1| (e_value=2e-103) NtPRp27 [Nicotiana tabacum];; (*TAIR) AT2G15220.1 (e_value=1e-78) | Symbols: | Plant basic secretory protein (BSP) family protein | chr2:6608689-6609366 FORWARD LENGTH=225;; (*ITAG) Solyc01g107540.2.1 (e_value=3e-106) genomic_reference:SL2.40ch01 gene_region:86811706-86812625 transcript_region:SL2.40ch01:86811706..86812625+ functional_description:"PBSP domain-containing protein (AHRD V1 **-- C9S7G7_VERA1); contains Interpro domain(s) IPR007541 Plant Basic Secretory Protein "; NbS00058283g0008.1 protein AED:0.29 eAED:0.29 QI:261|0.8|0.83|1|1|1|6|46|384; (*GB) gi|118488207|gb|ABK95923.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q9C6D2|MTK_ARATH (e_value=0.0) Methylthioribose kinase OS=Arabidopsis thaliana GN=MTK PE=1 SV=1;; (*TAIR) AT1G49820.1 (e_value=0.0) | Symbols: ATMTK, MTK | S-methyl-5-thioribose kinase | chr1:18443005-18444907 FORWARD LENGTH=420;; (*ITAG) Solyc01g107550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86812833-86817305 transcript_region:SL2.40ch01:86812833..86817305- go_terms:GO:0046522 functional_description:"Methylthioribose kinase (AHRD V1 **** Q6PMT1_ORYSJ); contains Interpro domain(s) IPR009212 Methylthioribose kinase "; GO:0046522 NbS00001062g0001.1 protein AED:0.26 eAED:0.27 QI:126|1|0.75|1|0.66|0.5|4|523|176; (*ITAG) Solyc11g009070.1.1 (e_value=1e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3191449-3196487 transcript_region:SL2.40ch11:3191449..3196487- functional_description:"Genomic DNA chromosome 5 P1 clone MQN23 (AHRD V1 ***- Q9FJP0_ARATH)"; NbS00001062g0022.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.91|0.92|13|502|400; (*GB) gi|224081122|ref|XP_002306301.1| (e_value=4e-156) predicted protein [Populus trichocarpa];; (*TAIR) AT5G10320.1 (e_value=7e-142) | Symbols: | unknown protein; Has 54 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3244180-3246603 REVERSE LENGTH=403;; (*ITAG) Solyc11g009060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3182748-3190461 transcript_region:SL2.40ch11:3182748..3190461- functional_description:"Unknown Protein (AHRD V1)"; NbS00001062g0010.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.6|1|1|5|0|244; (*GB) gi|584779|sp|P37822.1|AROG_SOLTU (e_value=6e-150) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor;; (*SWP) sp|P37822|AROG_SOLTU (e_value=2e-151) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1;; (*TAIR) AT1G22410.1 (e_value=1e-141) | Symbols: | Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527;; (*ITAG) Solyc11g009080.1.1 (e_value=8e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3200299-3203598 transcript_region:SL2.40ch11:3200299..3203598+ go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 1 (AHRD V1 ***- B6TUB8_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0009073 NbS00001062g0024.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.42|1|0.66|0.71|7|0|465; (*GB) gi|296084731|emb|CBI25872.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=6e-153) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=5e-154) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc11g009100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3211903-3218285 transcript_region:SL2.40ch11:3211903..3218285+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00001062g0013.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|3|0|353; (*GB) gi|225467167|ref|XP_002269291.1| (e_value=4e-146) PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=2e-95) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=1e-96) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc11g009050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3176495-3178519 transcript_region:SL2.40ch11:3176495..3178519+ functional_description:"F-box protein-like (AHRD V1 ***- Q67X80_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00001062g0023.1 protein AED:0.41 eAED:0.51 QI:0|0.5|0.33|1|0.5|0.66|3|0|125; (*GB) gi|302141654|emb|CBI18832.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8K2|AB12G_ARATH (e_value=2e-23) ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1;; (*TAIR) AT1G51500.1 (e_value=2e-24) | Symbols: CER5, D3, ABCG12, WBC12, ATWBC12 | ABC-2 type transporter family protein | chr1:19097967-19100972 REVERSE LENGTH=687;; (*ITAG) Solyc11g009100.1.1 (e_value=4e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3211903-3218285 transcript_region:SL2.40ch11:3211903..3218285+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00001062g0019.1 protein AED:0.29 eAED:0.85 QI:0|0|0|1|1|0|2|0|152; (*GB) gi|359491156|ref|XP_002262922.2| (e_value=8e-42) PREDICTED: telomere length regulation protein TEL2 homolog [Vitis vinifera];; (*TAIR) AT3G48470.1 (e_value=4e-32) | Symbols: EMB2423 | embryo defective 2423 | chr3:17951689-17956754 FORWARD LENGTH=1027;; (*ITAG) Solyc10g006780.2.1 (e_value=1e-69) genomic_reference:SL2.40ch10 gene_region:1222546-1229429 transcript_region:SL2.40ch10:1222546..1229429- functional_description:"Telomere length regulation protein TEL2 homolog (AHRD V1 *-*- TELO2_MOUSE); contains Interpro domain(s) IPR019337 Telomere length regulation protein "; NbS00001062g0029.1 protein AED:0.35 eAED:0.47 QI:0|0|0|1|0|0|2|0|95 NbS00007326g0002.1 protein AED:0.42 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|195608638|gb|ACG26149.1| (e_value=3e-48) UV-induced protein uvi31 [Zea mays];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=5e-33) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT1G55805.1 (e_value=5e-37) | Symbols: | BolA-like family protein | chr1:20858956-20859438 REVERSE LENGTH=160;; (*ITAG) Solyc09g090830.2.1 (e_value=2e-59) genomic_reference:SL2.40ch09 gene_region:65586858-65589544 transcript_region:SL2.40ch09:65586858..65589544+ functional_description:"BolA-like protein expressed (AHRD V1 *-*- Q10PW0_ORYSJ); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00007326g0003.1 protein AED:0.91 eAED:1.00 QI:0|0|0|0.16|1|1|6|0|331 NbS00007326g0018.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|109|79; (*ITAG) Solyc03g098750.2.1 (e_value=2e-20) genomic_reference:SL2.40ch03 gene_region:54474889-54477037 transcript_region:SL2.40ch03:54474889..54477037- functional_description:"Unknown Protein (AHRD V1)"; NbS00007326g0021.1 protein AED:0.10 eAED:0.10 QI:371|1|1|1|0.91|0.92|13|206|468; (*GB) gi|359491097|ref|XP_003634219.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH79|Y5064_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1;; (*TAIR) AT5G50530.1 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548;; (*ITAG) Solyc12g032930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:21836138-21839862 transcript_region:SL2.40ch12:21836138..21839862+ functional_description:"CBS domain containing protein (AHRD V1 ***- B6U1W0_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00007326g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.16|1|1|6|0|269; (*GB) gi|224125832|ref|XP_002329728.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|F4I933|STR8_ARATH (e_value=3e-58) Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=STR8 PE=2 SV=1;; (*TAIR) AT1G17850.1 (e_value=2e-59) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr1:6146470-6148820 REVERSE LENGTH=446;; (*ITAG) Solyc12g027770.1.1 (e_value=5e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:20129796-20135584 transcript_region:SL2.40ch12:20129796..20135584- functional_description:"UPF0176 protein yceA (AHRD V1 ***- Q1RDA3_ECOUT); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00002876g0009.1 protein AED:0.22 eAED:0.24 QI:0|0.2|0|1|0.4|0.5|6|0|1443; (*GB) gi|208429106|gb|ACI26722.1| (e_value=0.0) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=5e-95) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=4e-96) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60920505-60927117 transcript_region:SL2.40ch07:60920505..60927117+ go_terms:GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 *-*- B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00002876g0001.1 protein AED:0.47 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|208429106|gb|ACI26722.1| (e_value=8e-72) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=1e-25) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=8e-27) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055580.1.1 (e_value=6e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60885241-60887985 transcript_region:SL2.40ch07:60885241..60887985- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002876g0008.1 protein AED:0.43 eAED:0.60 QI:0|0|0|1|0.5|0.66|3|0|346; (*GB) gi|302143478|emb|CBI22039.3| (e_value=4e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=1e-35) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=9e-37) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055640.1.1 (e_value=4e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60920505-60927117 transcript_region:SL2.40ch07:60920505..60927117+ go_terms:GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 *-*- B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00053325g0004.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|0|0.33|3|0|157; (*GB) gi|388498352|gb|AFK37242.1| (e_value=1e-97) unknown [Medicago truncatula];; (*SWP) sp|O42901|YBA9_SCHPO (e_value=3e-35) Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.09c PE=2 SV=3;; (*TAIR) AT5G42000.1 (e_value=6e-96) | Symbols: | ORMDL family protein | chr5:16799455-16800681 FORWARD LENGTH=154;; (*ITAG) Solyc08g082920.2.1 (e_value=5e-101) genomic_reference:SL2.40ch08 gene_region:62736967-62742549 transcript_region:SL2.40ch08:62736967..62742549- go_terms:GO:0042802 functional_description:"ORM1-like protein 2 (AHRD V1 ***- B4FEN2_MAIZE); contains Interpro domain(s) IPR007203 ORMDL "; GO:0042802 NbC25067248g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|225456800|ref|XP_002277813.1| (e_value=4e-106) PREDICTED: programmed cell death protein 4 [Vitis vinifera];; (*TAIR) AT4G24800.3 (e_value=2e-94) | Symbols: | MA3 domain-containing protein | chr4:12782463-12784902 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00017044g0013.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.25|1|0|0.5|4|8|206; (*GB) gi|356549056|ref|XP_003542914.1| (e_value=2e-70) PREDICTED: tubby-like F-box protein 6-like [Glycine max];; (*SWP) sp|Q10LG8|TLP6_ORYSJ (e_value=8e-61) Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1;; (*TAIR) AT2G47900.2 (e_value=1e-60) | Symbols: AtTLP3, TLP3 | tubby like protein 3 | chr2:19611196-19612766 REVERSE LENGTH=406;; (*ITAG) Solyc09g074510.2.1 (e_value=6e-63) genomic_reference:SL2.40ch09 gene_region:61805393-61810886 transcript_region:SL2.40ch09:61805393..61810886+ go_terms:GO:0008020 functional_description:"Tubby-like F-box protein 3 (AHRD V1 ***- TLP3_ARATH); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0008020 NbS00017044g0012.1 protein AED:0.27 eAED:0.32 QI:0|1|0.5|1|1|1|4|0|262; (*GB) gi|225436797|ref|XP_002269323.1| (e_value=4e-99) PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera];; (*SWP) sp|Q10LG8|TLP6_ORYSJ (e_value=4e-94) Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1;; (*TAIR) AT2G47900.3 (e_value=1e-88) | Symbols: TLP3 | tubby like protein 3 | chr2:19611196-19612766 REVERSE LENGTH=407;; (*ITAG) Solyc01g067680.2.1 (e_value=4e-132) genomic_reference:SL2.40ch01 gene_region:68951551-68954758 transcript_region:SL2.40ch01:68951551..68954758- go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 6 (AHRD V1 ***- TLP6_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00017044g0008.1 protein AED:0.42 eAED:0.55 QI:0|0|0|1|1|1|2|0|59; (*GB) gi|388504772|gb|AFK40452.1| (e_value=3e-24) unknown [Lotus japonicus];; (*TAIR) AT3G62450.1 (e_value=2e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:23098144-23098630 FORWARD LENGTH=74;; (*ITAG) Solyc01g067820.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:69190398-69192447 transcript_region:SL2.40ch01:69190398..69192447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017044g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc01g067840.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:69200855-69201389 transcript_region:SL2.40ch01:69200855..69201389+ functional_description:"Unknown Protein (AHRD V1)"; NbC26172235g0003.1 protein AED:0.84 eAED:0.84 QI:57|0|0|0.33|0.5|0.66|3|0|151; (*GB) gi|224097532|ref|XP_002310975.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H2U1|DHX36_HUMAN (e_value=4e-28) Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2;; (*TAIR) AT5G04895.1 (e_value=6e-58) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=6e-62) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00013092g0003.1 protein AED:0.45 eAED:0.42 QI:0|0.66|0|1|0.33|0.25|4|0|162; (*GB) gi|255570138|ref|XP_002526031.1| (e_value=2e-75) phytanoyl-CoA dioxygenase domain containing, putative [Ricinus communis];; (*SWP) sp|Q5U3U0|PHYD1_DANRE (e_value=2e-33) Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Danio rerio GN=phyhd1 PE=2 SV=1;; (*TAIR) AT2G01490.1 (e_value=3e-71) | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221316-223187 FORWARD LENGTH=283;; (*ITAG) Solyc05g007970.2.1 (e_value=1e-84) genomic_reference:SL2.40ch05 gene_region:2390017-2393710 transcript_region:SL2.40ch05:2390017..2393710+ go_terms:GO:0005515 functional_description:"Phytanoyl-CoA dioxygenase (AHRD V1 ***- B6R8S2_9RHOB); contains Interpro domain(s) IPR008775 Phytanoyl-CoA dioxygenase "; GO:0005515 NbS00045183g0012.1 protein AED:0.14 eAED:0.14 QI:781|0.75|0.6|1|0.75|0.6|5|0|289; (*GB) gi|225445838|ref|XP_002277707.1| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100267212 [Vitis vinifera];; (*ITAG) Solyc07g005690.2.1 (e_value=1e-121) genomic_reference:SL2.40ch07 gene_region:573797-576970 transcript_region:SL2.40ch07:573797..576970+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045183g0002.1 protein AED:0.31 eAED:0.47 QI:0|0|0|1|1|1|2|0|287; (*GB) gi|224091795|ref|XP_002309354.1| (e_value=4e-29) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g005700.2.1 (e_value=9e-70) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00045183g0014.1 protein AED:0.48 eAED:0.51 QI:192|1|0.5|1|0|0|2|0|242; (*ITAG) Solyc07g005700.2.1 (e_value=1e-67) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00045183g0004.1 protein AED:0.12 eAED:0.12 QI:53|0.85|1|1|0.57|0.5|8|314|436; (*GB) gi|224088300|ref|XP_002308408.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M099|SCP24_ARATH (e_value=0.0) Serine carboxypeptidase 24 OS=Arabidopsis thaliana GN=SCPL24 PE=1 SV=1;; (*TAIR) AT4G30610.1 (e_value=0.0) | Symbols: BRS1, SCPL24 | alpha/beta-Hydrolases superfamily protein | chr4:14944219-14948391 FORWARD LENGTH=465;; (*ITAG) Solyc07g005680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:561665-569230 transcript_region:SL2.40ch07:561665..569230+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00012115g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|132 NbS00061752g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|356531419|ref|XP_003534275.1| (e_value=3e-49) PREDICTED: uncharacterized protein LOC100790691 [Glycine max];; (*ITAG) Solyc08g076870.1.1 (e_value=6e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:57959724-57960461 transcript_region:SL2.40ch08:57959724..57960461+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025280g0012.1 protein AED:0.15 eAED:0.15 QI:78|1|0.5|1|1|1|2|0|235; (*GB) gi|225457413|ref|XP_002284935.1| (e_value=2e-54) PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera];; (*TAIR) AT5G62440.1 (e_value=8e-44) | Symbols: | Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202;; (*ITAG) Solyc06g069770.2.1 (e_value=1e-93) genomic_reference:SL2.40ch06 gene_region:39839918-39842331 transcript_region:SL2.40ch06:39839918..39842331- functional_description:"DNA-directed RNA polymerase (AHRD V1 *--- B9GKP9_POPTR)"; NbS00025280g0009.1 protein AED:0.12 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|100; (*ITAG) Solyc03g043830.1.1 (e_value=8e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11475779-11477154 transcript_region:SL2.40ch03:11475779..11477154- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"DNA binding protein (AHRD V1 *-*- D7LZY2_ARALY); contains Interpro domain(s) IPR008917 Eukaryotic transcription factor, Skn-1-like, DNA-binding "; GO:0005634,GO:0006355,GO:0045449 NbS00025280g0011.1 protein AED:0.23 eAED:0.57 QI:133|0|0.5|1|1|1|2|0|102; (*GB) gi|255547407|ref|XP_002514761.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis]; NbS00025280g0013.1 protein AED:0.11 eAED:0.11 QI:230|1|1|1|0.5|0.2|5|375|176; (*GB) gi|359478760|ref|XP_003632167.1| (e_value=5e-79) PREDICTED: ataxin-7-like protein 3-like [Vitis vinifera];; (*TAIR) AT5G58575.1 (e_value=8e-66) | Symbols: | CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23674399-23675224 FORWARD LENGTH=181;; (*ITAG) Solyc06g082160.2.1 (e_value=9e-92) genomic_reference:SL2.40ch06 gene_region:44360379-44364956 transcript_region:SL2.40ch06:44360379..44364956- functional_description:"SAGA-associated factor 11 homolog (AHRD V1 *-*- SGF11_ANOGA); contains Interpro domain(s) IPR013246 Sgf11, transcriptional regulation "; NbS00025280g0018.1 protein AED:0.20 eAED:0.21 QI:422|0.57|0.75|1|0.71|0.62|8|462|275; (*GB) gi|225457415|ref|XP_002284912.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100250124 [Vitis vinifera];; (*TAIR) AT3G47550.1 (e_value=4e-30) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17524942 FORWARD LENGTH=232;; (*ITAG) Solyc06g069780.2.1 (e_value=1e-64) genomic_reference:SL2.40ch06 gene_region:39845997-39849671 transcript_region:SL2.40ch06:39845997..39849671+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00008384g0002.1 protein AED:0.44 eAED:0.83 QI:0|0|0|1|0|0.33|3|0|66 NbS00036066g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|284; (*GB) gi|225452173|ref|XP_002270738.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100249110 [Vitis vinifera];; (*TAIR) AT3G27250.1 (e_value=8e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10061633-10062481 FORWARD LENGTH=282;; (*ITAG) Solyc02g068030.1.1 (e_value=5e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32661807-32662649 transcript_region:SL2.40ch02:32661807..32662649- functional_description:"Unknown Protein (AHRD V1)"; NbS00049462g0003.1 protein AED:0.60 eAED:0.71 QI:0|0|0.5|1|1|1|2|31|146 NbS00048818g0003.1 protein AED:0.17 eAED:0.17 QI:155|1|1|1|0.88|1|10|408|474; (*GB) gi|356530543|ref|XP_003533840.1| (e_value=0.0) PREDICTED: endoplasmic oxidoreductin-2-like [Glycine max];; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=0.0) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1;; (*TAIR) AT1G72280.1 (e_value=0.0) | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469;; (*ITAG) Solyc07g056390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 "; GO:0015035 NbC25881068g0003.1 protein AED:0.44 eAED:0.45 QI:0|1|0.6|1|1|1|5|0|149; (*GB) gi|76160923|gb|ABA40425.1| (e_value=5e-80) unknown [Solanum tuberosum];; (*SWP) sp|Q9D0I8|MRT4_MOUSE (e_value=2e-44) mRNA turnover protein 4 homolog OS=Mus musculus GN=Mrto4 PE=2 SV=1;; (*TAIR) AT1G25260.1 (e_value=3e-64) | Symbols: | Ribosomal protein L10 family protein | chr1:8854163-8855766 REVERSE LENGTH=235;; (*ITAG) Solyc01g104470.2.1 (e_value=7e-83) genomic_reference:SL2.40ch01 gene_region:84693611-84696766 transcript_region:SL2.40ch01:84693611..84696766- go_terms:GO:0003735 functional_description:"mRNA turnover protein 4 homolog (AHRD V1 **-- B5X718_SALSA)"; GO:0003735 NbS00008945g0004.1 protein AED:0.17 eAED:0.17 QI:210|1|1|1|1|1|16|273|527; (*GB) gi|356505306|ref|XP_003521432.1| (e_value=0.0) PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max];; (*SWP) sp|Q42806|KPYC_SOYBN (e_value=3e-131) Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G52990.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr3:19649046-19652237 FORWARD LENGTH=527;; (*ITAG) Solyc10g083720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62811178-62816713 transcript_region:SL2.40ch10:62811178..62816713+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- Q94KE3_ARATH); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00032749g0002.1 protein AED:0.23 eAED:0.24 QI:143|0.8|0.83|1|0.8|0.66|6|0|499; (*GB) gi|225440364|ref|XP_002270472.1| (e_value=3e-155) PREDICTED: uncharacterized protein LOC100256181 [Vitis vinifera];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=1e-47) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT5G02320.2 (e_value=1e-86) | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548;; (*ITAG) Solyc09g010820.2.1 (e_value=3e-170) genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00032749g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|0|1|0|102; (*GB) gi|21314549|gb|AAM47000.1|AF512542_1 (e_value=7e-58) alpha-expansin precursor [Gossypium hirsutum];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=4e-55) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=3e-56) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc10g086520.1.1 (e_value=5e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64635036-64636416 transcript_region:SL2.40ch10:64635036..64636416- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00054409g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|543; (*GB) gi|225470922|ref|XP_002264409.1| (e_value=0.0) PREDICTED: transcription factor bHLH13 [Vitis vinifera];; (*SWP) sp|Q9LNJ5|BH013_ARATH (e_value=4e-154) Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1;; (*TAIR) AT1G01260.3 (e_value=3e-155) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590;; (*ITAG) Solyc01g096050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78903296-78905572 transcript_region:SL2.40ch01:78903296..78905572- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00025658g0015.1 protein AED:0.11 eAED:0.11 QI:340|0.83|0.85|1|0.66|0.42|7|301|376; (*GB) gi|224140621|ref|XP_002323680.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZV3|MAN6_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1;; (*TAIR) AT5G01930.1 (e_value=0.0) | Symbols: MAN6, AtMAN6 | Glycosyl hydrolase superfamily protein | chr5:361189-362867 REVERSE LENGTH=448;; (*ITAG) Solyc10g074920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57959156-57961088 transcript_region:SL2.40ch10:57959156..57961088+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- B4ADW3_BACPU); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00025658g0013.1 protein AED:0.18 eAED:0.19 QI:0|0.75|0.55|1|0.75|0.77|9|0|1343; (*GB) gi|356566785|ref|XP_003551608.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max];; (*SWP) sp|P98204|ALA1_ARATH (e_value=0.0) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=0.0) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc10g074940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57978321-57986678 transcript_region:SL2.40ch10:57978321..57986678+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00025658g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.5|1|1|1|6|0|480; (*GB) gi|356532147|ref|XP_003534635.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Glycine max];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=0.0) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=0.0) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc10g074930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57961793-57964748 transcript_region:SL2.40ch10:57961793..57964748- go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- D3BIR2_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00025658g0003.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.33|1|1|3|0|327; (*ITAG) Solyc12g044970.1.1 (e_value=5e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00021897g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.25|1|0.66|0.5|4|0|595; (*GB) gi|110083391|dbj|BAE97400.1| (e_value=2e-133) heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=4e-130) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=4e-130) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=8e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00021897g0009.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.87|1|0.71|0.62|8|397|190; (*GB) gi|356582328|ref|NP_001239046.1| (e_value=3e-131) calcineurin B-like 2 [Solanum lycopersicum];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=1e-128) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT4G26570.1 (e_value=3e-129) | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226;; (*ITAG) Solyc07g065820.2.1 (e_value=6e-134) genomic_reference:SL2.40ch07 gene_region:64652286-64656394 transcript_region:SL2.40ch07:64652286..64656394+ go_terms:GO:0004723 functional_description:"Calcineurin B (AHRD V1 ***- Q8L7F6_PEA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0004723 NbS00021897g0012.1 protein AED:0.58 eAED:0.58 QI:18|0.33|0|1|1|1|4|0|70; (*TAIR) AT3G17300.1 (e_value=7e-16) | Symbols: | unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:5907616-5908695 FORWARD LENGTH=91;; (*ITAG) Solyc04g071180.2.1 (e_value=9e-19) genomic_reference:SL2.40ch04 gene_region:55715734-55717220 transcript_region:SL2.40ch04:55715734..55717220+ go_terms:GO:0000105 functional_description:"Genomic DNA chromosome 3 P1 clone MGD8 (AHRD V1 ***- Q9LUU1_ARATH); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0000105 NbS00022223g0004.1 protein AED:0.04 eAED:0.04 QI:403|1|1|1|1|1|3|592|160; (*GB) gi|118481875|gb|ABK92874.1| (e_value=9e-65) unknown [Populus trichocarpa];; (*TAIR) AT2G32280.1 (e_value=3e-64) | Symbols: | Protein of unknown function (DUF1218) | chr2:13713210-13713977 FORWARD LENGTH=163;; (*ITAG) Solyc05g046130.2.1 (e_value=4e-100) genomic_reference:SL2.40ch05 gene_region:57409466-57412203 transcript_region:SL2.40ch05:57409466..57412203- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00022223g0007.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|0.66|3|0|167 NbS00035998g0003.1 protein AED:0.42 eAED:0.42 QI:80|0.57|0.37|1|1|0.87|8|0|189; (*GB) gi|225457592|ref|XP_002273352.1| (e_value=4e-46) PREDICTED: protein canopy homolog 1 [Vitis vinifera];; (*TAIR) AT1G42480.1 (e_value=4e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:15936297-15938692 FORWARD LENGTH=182;; (*ITAG) Solyc04g082590.2.1 (e_value=9e-62) genomic_reference:SL2.40ch04 gene_region:63817382-63821548 transcript_region:SL2.40ch04:63817382..63821548+ functional_description:"Canopy homolog 2 (AHRD V1 ***- C1BWT2_ESOLU)"; NbS00052662g0004.1 protein AED:0.05 eAED:0.05 QI:209|0.5|0.33|1|0|0.66|3|0|164; (*GB) gi|356518140|ref|XP_003527740.1| (e_value=5e-16) PREDICTED: uncharacterized protein LOC100801392 [Glycine max];; (*ITAG) Solyc04g077690.2.1 (e_value=7e-57) genomic_reference:SL2.40ch04 gene_region:60218657-60219981 transcript_region:SL2.40ch04:60218657..60219981- functional_description:"Unknown Protein (AHRD V1)"; NbS00009509g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.33|3|0|284; (*GB) gi|221220532|gb|ACM08927.1| (e_value=3e-161) Tubulin beta-2C chain [Salmo salar];; (*SWP) sp|P29516|TBB8_ARATH (e_value=3e-133) Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2;; (*TAIR) AT5G23860.2 (e_value=3e-134) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc10g085020.1.1 (e_value=6e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63679058-63680810 transcript_region:SL2.40ch10:63679058..63680810- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbS00022382g0007.1 protein AED:0.13 eAED:0.13 QI:275|1|0.8|1|1|1|5|0|304; (*GB) gi|350539988|ref|NP_001233834.1| (e_value=3e-156) chloroplast-specific ribosomal protein [Solanum lycopersicum];; (*SWP) sp|P19954|RR30_SPIOL (e_value=4e-110) 30S ribosomal protein 1, chloroplastic OS=Spinacia oleracea GN=RPS30 PE=1 SV=2;; (*TAIR) AT5G24490.1 (e_value=3e-114) | Symbols: | 30S ribosomal protein, putative | chr5:8365690-8367178 FORWARD LENGTH=308;; (*ITAG) Solyc06g073090.2.1 (e_value=5e-159) genomic_reference:SL2.40ch06 gene_region:41417554-41421363 transcript_region:SL2.40ch06:41417554..41421363+ go_terms:GO:0003735,GO:0003824 functional_description:"Ribosomal subunit interface protein (AHRD V1 **-- Q2JIS4_SYNJB); contains Interpro domain(s) IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein "; GO:0003735,GO:0003824 NbS00022382g0001.1 protein AED:0.09 eAED:0.15 QI:373|0.72|0.83|1|0.81|0.75|12|380|412; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=5e-131) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=6e-122) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc06g053300.2.1 (e_value=4e-178) genomic_reference:SL2.40ch06 gene_region:32513714-32520119 transcript_region:SL2.40ch06:32513714..32520119- go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 *-** B6U4M0_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00009431g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|255601895|ref|XP_002537773.1| (e_value=5e-64) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18690.1 (e_value=4e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18680.1); Has 522 Blast hits to 522 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10282788-10283636 FORWARD LENGTH=282;; (*ITAG) Solyc02g072570.1.1 (e_value=5e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36312960-36313712 transcript_region:SL2.40ch02:36312960..36313712- functional_description:"Transcription factor bZIP98 (Fragment) (AHRD V1 **-- A4ZGS6_SOYBN)"; NbS00009431g0008.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|0.75|0.66|0.5|4|0|680; (*GB) gi|255547047|ref|XP_002514581.1| (e_value=0.0) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*TAIR) AT2G43040.1 (e_value=0.0) | Symbols: NPG1 | tetratricopeptide repeat (TPR)-containing protein | chr2:17896049-17898524 REVERSE LENGTH=704;; (*ITAG) Solyc06g069080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39263360-39270468 transcript_region:SL2.40ch06:39263360..39270468+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein MPCBP (AHRD V1 **-* B6U2D5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00010401g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|3|0|302; (*GB) gi|148923042|gb|ABR18785.1| (e_value=4e-135) class S F-box protein [Nicotiana alata];; (*TAIR) AT3G06240.1 (e_value=7e-12) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc01g057010.1.1 (e_value=1e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:50833554-50834726 transcript_region:SL2.40ch01:50833554..50834726+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00019166g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.88|0.7|1|0.88|0.9|10|0|283; (*GB) gi|356525461|ref|XP_003531343.1| (e_value=6e-138) PREDICTED: protein CbbY, chromosomal-like [Glycine max];; (*SWP) sp|O33513|CBBY_RHOCA (e_value=9e-31) Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1;; (*TAIR) AT4G39970.1 (e_value=3e-133) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:18536678-18538429 REVERSE LENGTH=316;; (*ITAG) Solyc11g009020.1.1 (e_value=1e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3160364-3163079 transcript_region:SL2.40ch11:3160364..3163079- go_terms:GO:0005515,GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 **** Q10I42_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016787 NbS00019166g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.75|1|0|0.5|4|1303|272; (*GB) gi|359496429|ref|XP_003635235.1| (e_value=2e-117) PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase 2-like [Vitis vinifera];; (*SWP) sp|P0A573|Y2734_MYCBO (e_value=6e-15) Uncharacterized protein Mb2734 OS=Mycobacterium bovis GN=Mb2734 PE=3 SV=1;; (*TAIR) AT4G39955.1 (e_value=8e-102) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:18530573-18532088 FORWARD LENGTH=328;; (*ITAG) Solyc11g009000.1.1 (e_value=2e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3151023-3152011 transcript_region:SL2.40ch11:3151023..3152011+ functional_description:"Carboxylesterase bioH (AHRD V1 *--- BIOH_TOLAT); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00022368g0010.1 protein AED:0.05 eAED:0.05 QI:311|1|1|1|0.5|0.44|9|94|1032; (*GB) gi|359491046|ref|XP_003634211.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259538 [Vitis vinifera];; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=6e-52) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT3G17850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:6109854-6116245 REVERSE LENGTH=1296;; (*ITAG) Solyc03g118530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61454465-61471971 transcript_region:SL2.40ch03:61454465..61471971- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022368g0009.1 protein AED:0.09 eAED:0.09 QI:178|1|1|1|1|1|7|307|380; (*GB) gi|61097812|dbj|BAD04852.2| (e_value=0.0) hypothetical protein [Nicotiana benthamiana];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=4e-41) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.1 (e_value=3e-42) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6119968-6122691 FORWARD LENGTH=352;; (*ITAG) Solyc03g118540.2.1 (e_value=3e-157) genomic_reference:SL2.40ch03 gene_region:61483425-61486803 transcript_region:SL2.40ch03:61483425..61486803+ go_terms:GO:0042802 functional_description:"Protein TIFY 6B (AHRD V1 **-- TIF6B_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00024841g0003.1 protein AED:0.12 eAED:0.12 QI:242|0.90|1|1|0.36|0.25|12|487|471; (*GB) gi|359481506|ref|XP_002274849.2| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Vitis vinifera];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=7e-110) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G37440.1 (e_value=3e-179) | Symbols: | DNAse I-like superfamily protein | chr2:15719230-15721885 FORWARD LENGTH=479;; (*ITAG) Solyc09g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:466754-471839 transcript_region:SL2.40ch09:466754..471839- go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 ***- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00009767g0012.1 protein AED:0.10 eAED:0.10 QI:29|1|1|1|0.88|0.9|10|81|586; (*GB) gi|225447470|ref|XP_002266938.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera];; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=3e-131) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT4G12680.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7475104-7478174 FORWARD LENGTH=575;; (*ITAG) Solyc07g045140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55569354-55573399 transcript_region:SL2.40ch07:55569354..55573399+ functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 ***- Y3739_ARATH)"; NbS00009767g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|552; (*GB) gi|255558694|ref|XP_002520371.1| (e_value=0.0) basic 7S globulin 2 precursor small subunit, putative [Ricinus communis];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=1e-66) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G59080.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:21836812-21838419 FORWARD LENGTH=535;; (*ITAG) Solyc07g045100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55541314-55542963 transcript_region:SL2.40ch07:55541314..55542963+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00009767g0015.1 protein AED:0.13 eAED:0.29 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|255567222|ref|XP_002524592.1| (e_value=1e-66) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=2e-61) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT3G07620.1 (e_value=1e-62) | Symbols: | Exostosin family protein | chr3:2433267-2434988 REVERSE LENGTH=470;; (*ITAG) Solyc05g016320.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:15551119-15553856 transcript_region:SL2.40ch05:15551119..15553856- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LPB7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00015550g0001.1 protein AED:0.24 eAED:0.27 QI:204|0.5|0.4|1|1|1|5|265|244; (*GB) gi|195970356|gb|ACG60665.1| (e_value=5e-114) basic helix-loop-helix protein [Nicotiana tabacum];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=7e-94) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=5e-95) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc10g006510.2.1 (e_value=2e-122) genomic_reference:SL2.40ch10 gene_region:1086687-1090586 transcript_region:SL2.40ch10:1086687..1090586- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00015550g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.2|0.33|1|1|1|6|165|397; (*GB) gi|255563657|ref|XP_002522830.1| (e_value=9e-127) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FH36|GAUTC_ARATH (e_value=1e-118) Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1;; (*TAIR) AT5G54690.1 (e_value=9e-120) | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase 12 | chr5:22219435-22221769 REVERSE LENGTH=535;; (*ITAG) Solyc10g006500.2.1 (e_value=9e-156) genomic_reference:SL2.40ch10 gene_region:1081436-1085661 transcript_region:SL2.40ch10:1081436..1085661+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00015550g0012.1 protein AED:0.36 eAED:0.36 QI:219|0.75|0.6|1|1|0.8|5|0|160; (*GB) gi|225461038|ref|XP_002281399.1| (e_value=5e-103) PREDICTED: trafficking protein particle complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q5ZI57|TPPC3_CHICK (e_value=2e-50) Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1;; (*TAIR) AT5G54750.1 (e_value=4e-98) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc10g006490.2.1 (e_value=6e-111) genomic_reference:SL2.40ch10 gene_region:1075550-1079615 transcript_region:SL2.40ch10:1075550..1079615+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6T6G9_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00038330g0001.1 protein AED:0.12 eAED:0.12 QI:651|0.5|0.42|0.85|1|1|7|0|250; (*GB) gi|225427938|ref|XP_002277315.1| (e_value=6e-118) PREDICTED: magnesium transporter NIPA2 [Vitis vinifera];; (*SWP) sp|Q9JJC8|NIPA2_MOUSE (e_value=1e-54) Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1;; (*TAIR) AT2G21120.1 (e_value=1e-106) | Symbols: | Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328;; (*ITAG) Solyc10g054930.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51599205-51603491 transcript_region:SL2.40ch10:51599205..51603491+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C5FBJ1_NANOT); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00038330g0003.1 protein AED:0.22 eAED:0.22 QI:67|1|1|1|1|1|2|147|416; (*GB) gi|225427940|ref|XP_002275899.1| (e_value=3e-61) PREDICTED: uncharacterized protein LOC100262348 [Vitis vinifera];; (*TAIR) AT4G38710.1 (e_value=9e-38) | Symbols: | glycine-rich protein | chr4:18078141-18080002 REVERSE LENGTH=452;; (*ITAG) Solyc01g111200.2.1 (e_value=1e-125) genomic_reference:SL2.40ch01 gene_region:89298730-89301282 transcript_region:SL2.40ch01:89298730..89301282+ go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 4B (AHRD V1 **** Q9AUJ7_WHEAT); contains Interpro domain(s) IPR010433 Plant specific eukaryotic initiation factor 4B "; GO:0003743 NbS00006245g0003.1 protein AED:0.33 eAED:0.35 QI:105|0.66|0.75|1|1|0.75|4|0|281; (*GB) gi|255559653|ref|XP_002520846.1| (e_value=5e-144) dual specificity protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9SRK5|LSF2_ARATH (e_value=2e-135) Phosphoglucan phosphatase LSF2, chloroplastic OS=Arabidopsis thaliana GN=LSF2 PE=2 SV=1;; (*TAIR) AT3G10940.1 (e_value=2e-136) | Symbols: | dual specificity protein phosphatase (DsPTP1) family protein | chr3:3422259-3423394 REVERSE LENGTH=282;; (*ITAG) Solyc06g050230.2.1 (e_value=3e-102) genomic_reference:SL2.40ch06 gene_region:29258459-29260955 transcript_region:SL2.40ch06:29258459..29260955- go_terms:GO:0016311,GO:0006470 functional_description:"Dual-specificity protein-like phosphatase 3 (AHRD V1 **-- Q3S4H5_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00009233g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.25|1|0.66|0.5|4|0|597; (*GB) gi|147774691|emb|CAN74344.1| (e_value=0.0) hypothetical protein VITISV_005476 [Vitis vinifera];; (*SWP) sp|Q6NQJ7|FRS4_ARATH (e_value=1e-158) Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2;; (*TAIR) AT1G76320.2 (e_value=7e-160) | Symbols: FRS4 | FAR1-related sequence 4 | chr1:28631404-28633886 FORWARD LENGTH=730;; (*ITAG) Solyc03g121630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63770576-63782916 transcript_region:SL2.40ch03:63770576..63782916- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 ***- FRS4_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0003700,GO:0016563 NbS00009233g0003.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|266; (*GB) gi|147856501|emb|CAN78642.1| (e_value=4e-73) hypothetical protein VITISV_031741 [Vitis vinifera];; (*TAIR) AT1G17620.1 (e_value=3e-39) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:6062313-6063107 FORWARD LENGTH=264;; (*ITAG) Solyc03g121620.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63766550-63767353 transcript_region:SL2.40ch03:63766550..63767353+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00015353g0011.1 protein AED:0.05 eAED:0.06 QI:281|1|0.88|1|1|0.88|9|0|408; (*GB) gi|359480489|ref|XP_002264408.2| (e_value=0.0) PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Vitis vinifera];; (*SWP) sp|Q54Q92|LMD2A_DICDI (e_value=2e-24) LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1;; (*TAIR) AT5G65290.2 (e_value=0.0) | Symbols: | LMBR1-like membrane protein | chr5:26089814-26093617 FORWARD LENGTH=548;; (*ITAG) Solyc05g051490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60987810-61001742 transcript_region:SL2.40ch05:60987810..61001742- functional_description:"LMBR1 domain protein (AHRD V1 *-*- D4DI29_TRIVH); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00015353g0017.1 protein AED:0.37 eAED:0.38 QI:0|0.42|0.12|0.87|0.42|0.5|8|0|368; (*GB) gi|168038086|ref|XP_001771533.1| (e_value=3e-122) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|P46942|DB10_NICSY (e_value=3e-118) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G01540.4 (e_value=6e-103) | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619;; (*ITAG) Solyc12g035130.1.1 (e_value=6e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23233712-23239726 transcript_region:SL2.40ch12:23233712..23239726+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00015353g0013.1 protein AED:0.44 eAED:0.59 QI:182|0.5|0.33|1|0.5|0.66|3|0|55; (*GB) gi|359490688|ref|XP_003634143.1| (e_value=2e-14) PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like [Vitis vinifera];; (*ITAG) Solyc01g097670.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:80193056-80195803 transcript_region:SL2.40ch01:80193056..80195803+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015353g0012.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|0.5|2|0|83; (*GB) gi|359480489|ref|XP_002264408.2| (e_value=5e-35) PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Vitis vinifera];; (*TAIR) AT5G65290.1 (e_value=2e-33) | Symbols: | LMBR1-like membrane protein | chr5:26089814-26094337 FORWARD LENGTH=733;; (*ITAG) Solyc05g051490.2.1 (e_value=3e-40) genomic_reference:SL2.40ch05 gene_region:60987810-61001742 transcript_region:SL2.40ch05:60987810..61001742- functional_description:"LMBR1 domain protein (AHRD V1 *-*- D4DI29_TRIVH); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00015353g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.25|0.4|0.6|1|1|5|0|569; (*GB) gi|147826737|emb|CAN70653.1| (e_value=1e-55) hypothetical protein VITISV_010023 [Vitis vinifera];; (*SWP) sp|Q71H73|H33_VITVI (e_value=5e-31) Histone H3.3 OS=Vitis vinifera PE=2 SV=3;; (*TAIR) AT5G10980.1 (e_value=4e-32) | Symbols: | Histone superfamily protein | chr5:3472591-3473349 REVERSE LENGTH=136;; (*ITAG) Solyc11g010210.1.1 (e_value=5e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3280166-3281911 transcript_region:SL2.40ch11:3280166..3281911- functional_description:"SKIP interacting protein 3 (Fragment) (AHRD V1 *-*- B8Q889_ORYSI)"; NbS00015353g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|12003402|gb|AAG43558.1|AF211540_1 (e_value=2e-15) Avr9/Cf-9 rapidly elicited protein 75 [Nicotiana tabacum];; (*ITAG) Solyc11g010250.1.1 (e_value=2e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3317088-3317513 transcript_region:SL2.40ch11:3317088..3317513- functional_description:"Avr9/Cf-9 rapidly elicited protein 75 (AHRD V1 ***- Q9FQY9_TOBAC)"; NbS00008391g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|870; (*GB) gi|225436683|ref|XP_002262885.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera];; (*SWP) sp|Q9ZUW3|PP172_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1;; (*TAIR) AT2G27610.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11783927-11786533 REVERSE LENGTH=868;; (*ITAG) Solyc11g067210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50049703-50052318 transcript_region:SL2.40ch11:50049703..50052318+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00008391g0009.1 protein AED:0.34 eAED:0.45 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|225425908|ref|XP_002271612.1| (e_value=1e-16) PREDICTED: vinorine synthase-like [Vitis vinifera];; (*TAIR) AT3G26040.1 (e_value=9e-19) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc11g067270.1.1 (e_value=8e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50096678-50097970 transcript_region:SL2.40ch11:50096678..50097970+ go_terms:GO:0016740 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X8_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00008391g0003.1 protein AED:0.23 eAED:0.24 QI:206|0.71|0.62|1|1|1|8|328|427; (*GB) gi|37894600|gb|AAF21428.2|AF165422_1 (e_value=0.0) salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum];; (*SWP) sp|P52917|VPS4_YEAST (e_value=2e-114) Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS4 PE=1 SV=1;; (*TAIR) AT2G27600.1 (e_value=0.0) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067240.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50060665-50065903 transcript_region:SL2.40ch11:50060665..50065903- go_terms:GO:0005524,GO:0017111 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00008391g0010.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|144; (*GB) gi|269148239|gb|ACZ28491.1| (e_value=5e-19) BAHD acyltransferase [Capsicum chacoense];; (*ITAG) Solyc11g067270.1.1 (e_value=9e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50096678-50097970 transcript_region:SL2.40ch11:50096678..50097970+ go_terms:GO:0016740 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X8_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00055086g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.63|0.58|1|1|1|12|595|1226; (*GB) gi|359493041|ref|XP_002267014.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera];; (*SWP) sp|Q10251|IF2P_SCHPO (e_value=2e-135) Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1;; (*TAIR) AT1G76810.1 (e_value=0.0) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294;; (*ITAG) Solyc06g054400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33670542-33677416 transcript_region:SL2.40ch06:33670542..33677416+ go_terms:GO:0005525 functional_description:"Translation initiation factor (AHRD V1 ***- Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0005525 NbS00009785g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0|0|3|0|269; (*GB) gi|225434435|ref|XP_002277615.1| (e_value=2e-83) PREDICTED: GDSL esterase/lipase At1g58430 [Vitis vinifera];; (*SWP) sp|Q9SIQ2|GDL44_ARATH (e_value=5e-71) GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3;; (*TAIR) AT2G24560.1 (e_value=4e-72) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:10431537-10432933 FORWARD LENGTH=363;; (*ITAG) Solyc09g030370.2.1 (e_value=4e-79) genomic_reference:SL2.40ch09 gene_region:19776545-19777764 transcript_region:SL2.40ch09:19776545..19777764+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g30310 (AHRD V1 ***- GDL42_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00009814g0006.1 protein AED:0.11 eAED:0.11 QI:182|0.88|0.8|1|0.55|0.7|10|304|543; (*GB) gi|356560965|ref|XP_003548756.1| (e_value=3e-159) PREDICTED: membrane-bound transcription factor site-2 protease-like [Glycine max];; (*SWP) sp|O54862|MBTP2_CRIGR (e_value=3e-22) Membrane-bound transcription factor site-2 protease OS=Cricetulus griseus GN=MBTPS2 PE=2 SV=1;; (*TAIR) AT4G20310.2 (e_value=6e-127) | Symbols: | Peptidase M50 family protein | chr4:10961639-10963690 FORWARD LENGTH=488;; (*ITAG) Solyc01g020520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:31165431-31173049 transcript_region:SL2.40ch01:31165431..31173049+ go_terms:GO:0006508 functional_description:"Membrane-bound transcription factor protease site 2 (AHRD V1 ***- Q4V9P5_DANRE); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00009814g0101.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|113 NbS00006097g0007.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|458; (*GB) gi|147792812|emb|CAN68806.1| (e_value=9e-100) hypothetical protein VITISV_001078 [Vitis vinifera];; (*TAIR) AT4G17410.1 (e_value=5e-72) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr4:9716360-9721642 FORWARD LENGTH=826;; (*ITAG) Solyc10g083150.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62336627-62344862 transcript_region:SL2.40ch10:62336627..62344862- go_terms:GO:0005634,GO:0000151 functional_description:"Retinoblastoma-binding protein 6 (Fragment) (AHRD V1 *--- C7TZR6_SCHJA); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0000151 NbS00006097g0013.1 protein AED:0.37 eAED:0.37 QI:122|0.81|0.75|0.91|0.81|0.91|12|0|316; (*GB) gi|255565818|ref|XP_002523898.1| (e_value=7e-166) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54TH4|GET4_DICDI (e_value=2e-27) Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1;; (*TAIR) AT5G63220.1 (e_value=2e-142) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr5:25353256-25355410 REVERSE LENGTH=324;; (*ITAG) Solyc08g015990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6417550-6428851 transcript_region:SL2.40ch08:6417550..6428851- go_terms:GO:0005515 functional_description:"DUF410 domain protein (AHRD V1 **-- A1CM30_ASPCL); contains Interpro domain(s) IPR007317 Uncharacterised protein family UPF0363 "; GO:0005515 NbS00019238g0005.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|131; (*GB) gi|224130246|ref|XP_002320788.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=2e-30) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc08g080950.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61253941-61254360 transcript_region:SL2.40ch08:61253941..61254360- functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00019238g0008.1 protein AED:0.07 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|129; (*GB) gi|356506237|ref|XP_003521893.1| (e_value=8e-19) PREDICTED: putative ripening-related protein 2-like [Glycine max];; (*ITAG) Solyc08g080950.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61253941-61254360 transcript_region:SL2.40ch08:61253941..61254360- functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00050969g0006.1 protein AED:0.08 eAED:0.09 QI:1209|0.92|0.86|1|0.64|0.66|15|0|926; (*GB) gi|297738795|emb|CBI28040.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C6L7U1|LIN1_LOTJA (e_value=3e-165) Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2;; (*TAIR) AT3G06880.2 (e_value=1e-42) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264;; (*ITAG) Solyc07g020870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:14344450-14349988 transcript_region:SL2.40ch07:14344450..14349988- go_terms:GO:0005488,GO:0000151,GO:0055114 functional_description:"U-box domain-containing protein (AHRD V1 *-*- B6V8G2_HELAN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005488,GO:0000151,GO:0055114 NbS00008471g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|118482958|gb|ABK93391.1| (e_value=1e-52) unknown [Populus trichocarpa];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=1e-37) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39030.1 (e_value=1e-47) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16298260-16298946 FORWARD LENGTH=228;; (*ITAG) Solyc08g068280.1.1 (e_value=5e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54579271-54580005 transcript_region:SL2.40ch08:54579271..54580005+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00033086g0012.1 protein AED:0.01 eAED:0.01 QI:130|1|1|1|0.5|0.66|3|414|133; (*GB) gi|255563754|ref|XP_002522878.1| (e_value=1e-46) acyl carrier protein, putative [Ricinus communis];; (*SWP) sp|Q9FGJ4|ACPM3_ARATH (e_value=7e-38) Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1;; (*TAIR) AT5G47630.2 (e_value=5e-39) | Symbols: mtACP3 | mitochondrial acyl carrier protein 3 | chr5:19306397-19306885 FORWARD LENGTH=131;; (*ITAG) Solyc11g012180.1.1 (e_value=1e-76) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5103016-5103878 transcript_region:SL2.40ch11:5103016..5103878- go_terms:GO:0006633,GO:0000036,GO:0048037 functional_description:"Acyl carrier protein (AHRD V1 ***- B9SA59_RICCO); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0000036,GO:0048037 NbS00033086g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|359497770|ref|XP_002272250.2| (e_value=5e-121) PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q9SV07|ASAT1_ARATH (e_value=9e-89) Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1;; (*TAIR) AT3G51970.1 (e_value=7e-90) | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345;; (*ITAG) Solyc11g012230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5125432-5126493 transcript_region:SL2.40ch11:5125432..5126493+ go_terms:GO:0005515,GO:0008415 functional_description:"Wax synthase isoform 3 (AHRD V1 **-- Q84XY7_VITVI)"; GO:0005515,GO:0008415 NbS00033086g0010.1 protein AED:0.16 eAED:0.16 QI:39|1|1|1|0.8|0.66|6|476|452; (*GB) gi|297741811|emb|CBI33116.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0DCM5|MAN6_ORYSJ (e_value=5e-148) Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2;; (*TAIR) AT4G28320.1 (e_value=6e-138) | Symbols: MAN5, AtMAN5 | Glycosyl hydrolase superfamily protein | chr4:14018293-14019972 REVERSE LENGTH=431;; (*ITAG) Solyc11g012190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5108252-5112002 transcript_region:SL2.40ch11:5108252..5112002+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00033086g0014.1 protein AED:0.24 eAED:0.27 QI:49|0|0.5|1|0|0|2|0|138; (*GB) gi|225469956|ref|XP_002275440.1| (e_value=7e-31) PREDICTED: uncharacterized protein LOC100263809 [Vitis vinifera];; (*TAIR) AT5G47635.1 (e_value=7e-25) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:19307281-19307849 REVERSE LENGTH=164;; (*ITAG) Solyc11g012170.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5100692-5102479 transcript_region:SL2.40ch11:5100692..5102479+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033086g0011.1 protein AED:0.35 eAED:0.35 QI:154|1|1|1|1|1|14|251|420; (*GB) gi|224086373|ref|XP_002307870.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A5PKH3|FAAA_BOVIN (e_value=7e-180) Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1;; (*TAIR) AT1G12050.1 (e_value=0.0) | Symbols: | fumarylacetoacetase, putative | chr1:4072904-4075856 FORWARD LENGTH=421;; (*ITAG) Solyc11g012160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5093400-5099036 transcript_region:SL2.40ch11:5093400..5099036+ go_terms:GO:0008152,GO:0009072 functional_description:"Fumarylacetoacetase (AHRD V1 ***- Q2HT34_MEDTR); contains Interpro domain(s) IPR005959 Fumarylacetoacetase "; GO:0008152,GO:0009072 NbS00013090g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.6|1|1|1|5|533|408; (*GB) gi|3790188|emb|CAA74776.1| (e_value=0.0) NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q8LFC0|IDH1_ARATH (e_value=0.0) Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2;; (*TAIR) AT4G35260.1 (e_value=0.0) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367;; (*ITAG) Solyc10g074500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57374509-57382100 transcript_region:SL2.40ch10:57374509..57382100- go_terms:GO:0005739,GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- A3LYS8_PICST); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0005739,GO:0055114 NbS00013090g0013.1 protein AED:0.19 eAED:0.22 QI:0|0.8|0.62|1|0.53|0.68|16|107|714; (*GB) gi|350538171|ref|NP_001234330.1| (e_value=0.0) uncharacterized LOC544127 [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=0.0) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=0.0) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc10g083610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013090g0005.1 protein AED:0.13 eAED:0.85 QI:37|0|0.5|1|0|0|2|0|95 NbS00006315g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|393; (*GB) gi|94730426|sp|Q41319.2|STAD_SOLCO (e_value=0.0) RecName: Full=Acyl-[acyl-carrier-protein] desaturase, chloroplastic; AltName: Full=Stearoyl-ACP desaturase; Flags: Precursor;; (*SWP) sp|Q41319|STAD_SOLCO (e_value=0.0) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2;; (*TAIR) AT2G43710.2 (e_value=0.0) | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr2:18120107-18122495 FORWARD LENGTH=401;; (*ITAG) Solyc03g063110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:30614823-30618961 transcript_region:SL2.40ch03:30614823..30618961- go_terms:GO:0004768,GO:0045300 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** B7TZ44_SPIOL); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768,GO:0045300 NbS00006315g0002.1 protein AED:0.18 eAED:0.19 QI:81|0.72|0.73|1|1|1|19|220|654; (*GB) gi|224112407|ref|XP_002316177.1| (e_value=0.0) tubulin gamma complex-associated protein [Populus trichocarpa];; (*SWP) sp|Q5R5J6|GCP2_PONAB (e_value=3e-92) Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1;; (*TAIR) AT5G17410.2 (e_value=0.0) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr5:5730651-5736415 FORWARD LENGTH=679;; (*ITAG) Solyc02g081460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39994343-40002871 transcript_region:SL2.40ch02:39994343..40002871- go_terms:GO:0051011,GO:0043015 functional_description:"Gamma-tubulin complex component 2 (AHRD V1 **** D6RQU2_COPC7); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0051011,GO:0043015 NbS00006315g0003.1 protein AED:0.02 eAED:0.02 QI:69|0|0.5|1|0|0.5|2|190|130; (*GB) gi|225470636|ref|XP_002266137.1| (e_value=3e-62) PREDICTED: LOB domain-containing protein 6 [Vitis vinifera];; (*SWP) sp|O04479|LBD6_ARATH (e_value=2e-62) LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1;; (*TAIR) AT1G65620.4 (e_value=2e-63) | Symbols: AS2 | Lateral organ boundaries (LOB) domain family protein | chr1:24400146-24400745 FORWARD LENGTH=199;; (*ITAG) Solyc11g008830.1.1 (e_value=4e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3019777-3021109 transcript_region:SL2.40ch11:3019777..3021109+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00004645g0010.1 protein AED:0.27 eAED:0.32 QI:0|0.75|0.6|1|1|1|5|355|283; (*GB) gi|79393348|ref|NP_187146.2| (e_value=3e-89) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G04950.1 (e_value=6e-92) | Symbols: | CONTAINS InterPro DOMAIN/s: SEC-C motif (InterPro:IPR004027); Has 583 Blast hits to 583 proteins in 248 species: Archae - 0; Bacteria - 488; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | chr3:1371786-1373300 FORWARD LENGTH=231;; (*ITAG) Solyc02g079130.2.1 (e_value=4e-106) genomic_reference:SL2.40ch02 gene_region:38315747-38320771 transcript_region:SL2.40ch02:38315747..38320771- functional_description:"Protein translocase subunit secA (AHRD V1 *-*- SECA_CALS8); contains Interpro domain(s) IPR004027 SEC-C motif "; NbS00004645g0004.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|225423507|ref|XP_002269692.1| (e_value=0.0) PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G29360.2 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr3:11267375-11268817 REVERSE LENGTH=480;; (*ITAG) Solyc03g115380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59159703-59161145 transcript_region:SL2.40ch03:59159703..59161145+ go_terms:GO:0003979,GO:0009055 functional_description:"UDP-glucose dehydrogenase (AHRD V1 **** B1N754_EUCGR); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0003979,GO:0009055 NbS00004645g0001.1 protein AED:0.23 eAED:0.23 QI:69|1|0.66|1|0|0.33|3|0|513; (*GB) gi|225457305|ref|XP_002281450.1| (e_value=5e-107) PREDICTED: uncharacterized protein LOC100263964 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=2e-19) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT1G26580.1 (e_value=3e-48) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493;; (*ITAG) Solyc03g115440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59200206-59201528 transcript_region:SL2.40ch03:59200206..59201528+ go_terms:GO:0003677 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677 NbS00004645g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.88|0.9|1|0.66|0.7|10|317|250; (*GB) gi|388493638|gb|AFK34885.1| (e_value=2e-104) unknown [Medicago truncatula];; (*SWP) sp|P0C895|Y2010_ARATH (e_value=3e-22) LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1;; (*TAIR) AT5G07910.1 (e_value=2e-94) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:2521937-2523769 REVERSE LENGTH=262;; (*ITAG) Solyc03g115410.2.1 (e_value=4e-129) genomic_reference:SL2.40ch03 gene_region:59186913-59192387 transcript_region:SL2.40ch03:59186913..59192387+ go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00007535g0007.1 protein AED:0.38 eAED:0.40 QI:0|0.75|0.2|1|0.75|0.8|5|0|292; (*GB) gi|225457393|ref|XP_002281967.1| (e_value=7e-116) PREDICTED: probable lipoate-protein ligase A [Vitis vinifera];; (*TAIR) AT3G29010.1 (e_value=2e-112) | Symbols: | Biotin/lipoate A/B protein ligase family | chr3:11006945-11007977 FORWARD LENGTH=262;; (*ITAG) Solyc06g065310.2.1 (e_value=7e-159) genomic_reference:SL2.40ch06 gene_region:37116097-37120621 transcript_region:SL2.40ch06:37116097..37120621- go_terms:GO:0006464 functional_description:"Lipoate protein ligase-like protein (AHRD V1 ***- Q9MBG4_ARATH); contains Interpro domain(s) IPR004143 Biotin/lipoate A/B protein ligase "; GO:0006464 NbS00007535g0006.1 protein AED:0.61 eAED:0.82 QI:0|0.5|0|1|1|1|3|0|97 NbS00007535g0008.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|154; (*GB) gi|255547375|ref|XP_002514745.1| (e_value=2e-45) endonuclease, putative [Ricinus communis];; (*TAIR) AT3G47490.3 (e_value=1e-38) | Symbols: | HNH endonuclease | chr3:17498454-17500731 FORWARD LENGTH=215;; (*ITAG) Solyc07g021330.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:16895426-16895826 transcript_region:SL2.40ch07:16895426..16895826+ functional_description:"HNH endonuclease domain-containing protein (Fragment) (AHRD V1 *-*- C6F7M2_PSEMZ)"; NbS00009024g0004.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|246; (*GB) gi|224085487|ref|XP_002307592.1| (e_value=2e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14860.1 (e_value=1e-18) | Symbols: atofp11, OFP11 | ovate family protein 11 | chr4:8516531-8517079 FORWARD LENGTH=182;; (*ITAG) Solyc09g082080.1.1 (e_value=7e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:63313130-63313765 transcript_region:SL2.40ch09:63313130..63313765- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6UEQ7_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00009024g0002.1 protein AED:0.17 eAED:0.19 QI:0|0.4|0.45|0.81|1|1|11|1545|884; (*GB) gi|356502805|ref|XP_003520206.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100784172 [Glycine max];; (*TAIR) AT5G36740.1 (e_value=2e-52) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr5:14460790-14465727 FORWARD LENGTH=1179;; (*ITAG) Solyc09g065340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59010695-59021345 transcript_region:SL2.40ch09:59010695..59021345+ go_terms:GO:0006508,GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0006508,GO:0008270 NbC25918387g0004.1 protein AED:0.19 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.33|3|0|212; (*GB) gi|302143997|emb|CBI23102.3| (e_value=3e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24580.3 (e_value=5e-43) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=316;; (*ITAG) Solyc03g080100.2.1 (e_value=2e-53) genomic_reference:SL2.40ch03 gene_region:45553244-45555756 transcript_region:SL2.40ch03:45553244..45555756+ go_terms:GO:0030001 functional_description:"Copper-translocating P-type ATPase (AHRD V1 *--- Q3JHP1_BURP1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00026705g0003.1 protein AED:0.20 eAED:0.20 QI:0|0.81|0.75|0.91|0.81|0.66|12|269|746; (*GB) gi|225444363|ref|XP_002266688.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera];; (*SWP) sp|Q8RWU4|ATML1_ARATH (e_value=0.0) Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1;; (*TAIR) AT4G21750.2 (e_value=0.0) | Symbols: ATML1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:11556965-11560243 FORWARD LENGTH=762;; (*ITAG) Solyc02g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39110708-39114667 transcript_region:SL2.40ch02:39110708..39114667+ go_terms:GO:0043565 functional_description:"Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00041329g0005.1 protein AED:0.07 eAED:0.07 QI:176|0.9|0.90|1|0.9|0.90|11|0|608; (*GB) gi|356501035|ref|XP_003519334.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100795617 isoform 1 [Glycine max];; (*TAIR) AT1G23170.2 (e_value=3e-160) | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:8212724-8215516 FORWARD LENGTH=615;; (*ITAG) Solyc11g011220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4270031-4275016 transcript_region:SL2.40ch11:4270031..4275016- functional_description:"Unknown Protein (AHRD V1)"; NbS00006678g0001.1 protein AED:0.51 eAED:0.59 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-18) hypothetical protein [Nicotiana tabacum]; NbS00006678g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.33|1|0.5|0.33|3|0|320; (*GB) gi|357476343|ref|XP_003608457.1| (e_value=5e-160) Sigma factor sigB regulation protein rsbQ [Medicago truncatula];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=1e-53) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=4e-151) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092770.2.1 (e_value=8e-176) genomic_reference:SL2.40ch02 gene_region:48303721-48305719 transcript_region:SL2.40ch02:48303721..48305719+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00006678g0012.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|4|0|164; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-50) hypothetical protein [Nicotiana tabacum]; NbS00006678g0013.1 protein AED:0.41 eAED:0.73 QI:0|0|0|1|0|0|2|0|93 NbS00060906g0003.1 protein AED:0.55 eAED:0.75 QI:0|0.5|0|0.66|1|1|3|0|100; (*ITAG) Solyc12g011100.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3961313-3961803 transcript_region:SL2.40ch12:3961313..3961803+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001108g0011.1 protein AED:0.13 eAED:0.22 QI:0|0.54|0.41|1|0.36|0.25|12|0|741; (*GB) gi|359486373|ref|XP_002277384.2| (e_value=1e-147) PREDICTED: uncharacterized protein LOC100262072 [Vitis vinifera];; (*TAIR) AT2G40320.1 (e_value=2e-144) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052430.1.1 (e_value=8e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61800392-61803834 transcript_region:SL2.40ch05:61800392..61803834- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00001108g0113.1 protein AED:0.03 eAED:0.03 QI:44|1|1|1|0.4|0.33|6|276|426 NbS00001108g0111.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|1|0.66|0.25|4|0|219 NbS00001108g0114.1 protein AED:0.31 eAED:0.31 QI:0|1|0.90|1|0.9|0.90|11|549|283 NbS00024479g0011.1 protein AED:0.01 eAED:0.01 QI:605|1|0.66|1|1|1|3|0|78; (*GB) gi|356554129|ref|XP_003545401.1| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100802464 [Glycine max];; (*TAIR) AT5G19420.1 (e_value=4e-37) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc12g099750.1.1 (e_value=4e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:65108205-65110922 transcript_region:SL2.40ch12:65108205..65110922- functional_description:"Regulator of chromosome condensation family protein (AHRD V1 **-- D7LRE3_ARALY); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; NbS00024479g0009.1 protein AED:0.22 eAED:0.24 QI:60|0.5|0.44|1|1|0.88|9|603|841; (*GB) gi|255544003|ref|XP_002513064.1| (e_value=0.0) Ran GTPase binding protein, putative [Ricinus communis];; (*SWP) sp|Q4U2R1|HERC2_MOUSE (e_value=2e-48) E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc12g099740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65098639-65103409 transcript_region:SL2.40ch12:65098639..65103409- go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbS00024479g0010.1 protein AED:0.28 eAED:0.28 QI:225|0.8|0.83|1|1|1|6|348|369; (*GB) gi|255554575|ref|XP_002518326.1| (e_value=0.0) lipoic acid synthetase, putative [Ricinus communis];; (*SWP) sp|B9RX57|LISC_RICCO (e_value=0.0) Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1;; (*TAIR) AT5G08415.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr5:2710983-2713101 REVERSE LENGTH=394;; (*ITAG) Solyc12g099700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65074820-65081438 transcript_region:SL2.40ch12:65074820..65081438+ go_terms:GO:0008152,GO:0009107,GO:0051536 functional_description:"Lipoyl synthase (AHRD V1 *-*- B4UC29_ANASK); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0008152,GO:0009107,GO:0051536 NbS00045746g0009.1 protein AED:0.39 eAED:0.54 QI:0|0|0|1|1|1|2|0|93 NbS00045746g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|255557315|ref|XP_002519688.1| (e_value=8e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46230.1 (e_value=3e-48) | Symbols: | Protein of unknown function, DUF538 | chr5:18742593-18743024 REVERSE LENGTH=143;; (*ITAG) Solyc02g070500.1.1 (e_value=2e-71) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34810672-34811115 transcript_region:SL2.40ch02:34810672..34811115+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00045746g0008.1 protein AED:0.31 eAED:0.31 QI:207|1|0.88|1|1|1|9|325|237; (*GB) gi|359806124|ref|NP_001241191.1| (e_value=7e-171) uncharacterized protein LOC100799919 [Glycine max];; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=6e-172) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT3G14290.1 (e_value=6e-170) | Symbols: PAE2 | 20S proteasome alpha subunit E2 | chr3:4764364-4766381 FORWARD LENGTH=237;; (*ITAG) Solyc02g070510.2.1 (e_value=6e-177) genomic_reference:SL2.40ch02 gene_region:34815271-34822336 transcript_region:SL2.40ch02:34815271..34822336+ go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6TGU2_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00037036g0003.1 protein AED:0.45 eAED:0.66 QI:0|0|0|0.66|0|0.33|3|0|192; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-36) hypothetical protein [Nicotiana tabacum]; NbS00021744g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.25|1|0.66|0.5|4|0|204; (*GB) gi|225426354|ref|XP_002266149.1| (e_value=1e-54) PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera];; (*SWP) sp|Q5SN75|P2C08_ORYSJ (e_value=2e-52) Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1;; (*TAIR) AT1G07430.1 (e_value=5e-43) | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | chr1:2281151-2282656 REVERSE LENGTH=442;; (*ITAG) Solyc08g082260.1.1 (e_value=2e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62265564-62267353 transcript_region:SL2.40ch08:62265564..62267353- go_terms:GO:0004722,GO:0008022 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00021744g0012.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0|1|0|0.33|3|0|235; (*GB) gi|350535030|ref|NP_001234172.1| (e_value=8e-134) endo-beta-1,4-D-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|Q42059|GUN6_ARATH (e_value=6e-117) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2;; (*TAIR) AT1G64390.1 (e_value=4e-118) | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 | chr1:23911329-23914642 FORWARD LENGTH=620;; (*ITAG) Solyc08g082250.2.1 (e_value=1e-136) genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0030246,GO:0005576,GO:0005975,GO:0003824 NbS00021744g0011.1 protein AED:0.31 eAED:0.32 QI:0|0.75|0.66|1|0.87|0.88|9|0|603; (*GB) gi|350535030|ref|NP_001234172.1| (e_value=0.0) endo-beta-1,4-D-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|Q42059|GUN6_ARATH (e_value=0.0) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2;; (*TAIR) AT1G64390.1 (e_value=0.0) | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 | chr1:23911329-23914642 FORWARD LENGTH=620;; (*ITAG) Solyc08g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0030246,GO:0005576,GO:0005975,GO:0003824 NbS00000395g0011.1 protein AED:0.21 eAED:0.21 QI:181|0.75|1|1|0.25|0.4|5|189|130; (*GB) gi|351722553|ref|NP_001237248.1| (e_value=3e-76) uncharacterized protein LOC100305570 [Glycine max];; (*SWP) sp|Q5ZKQ8|ARL8A_CHICK (e_value=2e-55) ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1;; (*TAIR) AT5G37680.1 (e_value=1e-75) | Symbols: ATARLA1A, ARLA1A | ADP-ribosylation factor-like A1A | chr5:14969797-14971098 REVERSE LENGTH=184;; (*ITAG) Solyc03g043960.2.1 (e_value=1e-70) genomic_reference:SL2.40ch03 gene_region:11718646-11726031 transcript_region:SL2.40ch03:11718646..11726031- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor-like protein (AHRD V1 ***- Q93Y31_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00000395g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|289; (*ITAG) Solyc06g011460.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00000395g0009.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|0|0|2|0|200; (*GB) gi|255560149|ref|XP_002521092.1| (e_value=3e-33) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|O82318|Y2579_ARATH (e_value=3e-13) Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=3e-15) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008640.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:3578661-3581763 transcript_region:SL2.40ch07:3578661..3581763- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00000395g0010.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|190; (*GB) gi|39577522|gb|AAR28378.1| (e_value=4e-33) EIX receptor 2 [Solanum lycopersicum];; (*TAIR) AT2G33030.1 (e_value=4e-14) | Symbols: AtRLP25, RLP25 | receptor like protein 25 | chr2:14017684-14018340 REVERSE LENGTH=218;; (*ITAG) Solyc07g008630.1.1 (e_value=7e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00044068g0003.1 protein AED:0.21 eAED:0.21 QI:286|1|1|1|0.9|0.81|11|393|263; (*GB) gi|225427372|ref|XP_002282944.1| (e_value=1e-137) PREDICTED: novel plant SNARE 11 [Vitis vinifera];; (*SWP) sp|Q944A9|NPS11_ARATH (e_value=4e-125) Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2;; (*TAIR) AT2G35190.1 (e_value=3e-126) | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare 11 | chr2:14831087-14832979 FORWARD LENGTH=265;; (*ITAG) Solyc08g077550.2.1 (e_value=4e-164) genomic_reference:SL2.40ch08 gene_region:58694975-58701643 transcript_region:SL2.40ch08:58694975..58701643+ go_terms:GO:0008565,GO:0005484 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6TAD9_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0008565,GO:0005484 NbC25479605g0003.1 protein AED:0.16 eAED:0.16 QI:19|1|0|1|0.33|0.25|4|0|99 NbS00033194g0009.1 protein AED:0.18 eAED:0.18 QI:191|1|0.90|1|0.8|0.81|11|0|401; (*GB) gi|225460494|ref|XP_002274841.1| (e_value=0.0) PREDICTED: angio-associated migratory cell protein [Vitis vinifera];; (*SWP) sp|Q7YR70|AAMP_CANFA (e_value=9e-70) Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1;; (*TAIR) AT1G71840.1 (e_value=5e-172) | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407;; (*ITAG) Solyc07g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3832980-3838477 transcript_region:SL2.40ch07:3832980..3838477+ go_terms:GO:0008201 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008201 NbS00033194g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.62|0.44|0.88|0.25|0.66|9|0|303; (*GB) gi|356576129|ref|XP_003556186.1| (e_value=1e-110) PREDICTED: angio-associated migratory cell protein-like [Glycine max];; (*SWP) sp|Q7YR70|AAMP_CANFA (e_value=5e-41) Angio-associated migratory cell protein OS=Canis familiaris GN=AAMP PE=3 SV=1;; (*TAIR) AT1G71840.1 (e_value=3e-103) | Symbols: | transducin family protein / WD-40 repeat family protein | chr1:27022424-27024380 FORWARD LENGTH=407;; (*ITAG) Solyc07g008860.2.1 (e_value=7e-132) genomic_reference:SL2.40ch07 gene_region:3832980-3838477 transcript_region:SL2.40ch07:3832980..3838477+ go_terms:GO:0008201 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008201 NbS00044414g0008.1 protein AED:0.07 eAED:0.26 QI:86|0.33|0|1|0.33|0|4|0|110; (*GB) gi|42573077|ref|NP_974635.1| (e_value=2e-36) vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana];; (*SWP) sp|Q9SZE4|VP322_ARATH (e_value=1e-37) Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1;; (*TAIR) AT4G29160.2 (e_value=4e-39) | Symbols: SNF7.1 | SNF7 family protein | chr4:14381350-14382342 FORWARD LENGTH=192;; (*ITAG) Solyc05g026050.2.1 (e_value=3e-42) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00044414g0007.1 protein AED:0.21 eAED:0.21 QI:210|1|0.9|1|0.88|0.9|10|45|245; (*GB) gi|359484516|ref|XP_002283092.2| (e_value=2e-113) PREDICTED: meiotic nuclear division protein 1 homolog [Vitis vinifera];; (*SWP) sp|Q8GYD2|MND1_ARATH (e_value=5e-107) Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1;; (*TAIR) AT4G29170.1 (e_value=4e-108) | Symbols: ATMND1 | Mnd1 family protein | chr4:14382985-14385128 FORWARD LENGTH=230;; (*ITAG) Solyc12g008680.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2056414-2062039 transcript_region:SL2.40ch12:2056414..2062039+ go_terms:GO:0042802 functional_description:"Meiotic nuclear division protein 1 homolog (AHRD V1 ***- C1C1M1_9MAXI); contains Interpro domain(s) IPR005647 Meiotic nuclear division protein 1 "; GO:0042802 NbS00044414g0009.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|1|1|2|217|61; (*GB) gi|356520850|ref|XP_003529073.1| (e_value=3e-18) PREDICTED: arabinogalactan peptide 20-like [Glycine max];; (*SWP) sp|Q9FK16|AGP22_ARATH (e_value=2e-14) Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1;; (*TAIR) AT5G53250.1 (e_value=1e-15) | Symbols: AGP22, ATAGP22 | arabinogalactan protein 22 | chr5:21603715-21604007 FORWARD LENGTH=63;; (*ITAG) Solyc01g095520.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:78520328-78520863 transcript_region:SL2.40ch01:78520328..78520863- go_terms:GO:0005160 functional_description:"Arabinogalactan peptide 16 (AHRD V1 **-- AGP16_ARATH); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 "; GO:0005160 NbS00008897g0018.1 protein AED:0.18 eAED:0.19 QI:75|0.75|0.4|1|0.5|0.4|5|0|398; (*GB) gi|224142389|ref|XP_002324541.1| (e_value=6e-171) predicted protein [Populus trichocarpa];; (*TAIR) AT5G46220.1 (e_value=7e-139) | Symbols: | Protein of unknown function (DUF616) | chr5:18738827-18741964 FORWARD LENGTH=462;; (*ITAG) Solyc08g016620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:7981559-7984912 transcript_region:SL2.40ch08:7981559..7984912- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00008897g0016.1 protein AED:0.28 eAED:0.29 QI:96|0.77|0.78|1|0.66|0.68|19|798|576; (*GB) gi|225438347|ref|XP_002273171.1| (e_value=0.0) PREDICTED: cyclin-dependent kinase E-1 [Vitis vinifera];; (*SWP) sp|Q84TI6|CDKE1_ARATH (e_value=0.0) Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=2 SV=2;; (*TAIR) AT5G63610.1 (e_value=0.0) | Symbols: HEN3, CDKE;1, ATCDK8 | cyclin-dependent kinase E;1 | chr5:25463645-25465057 REVERSE LENGTH=470;; (*ITAG) Solyc12g027870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:21220068-21227856 transcript_region:SL2.40ch12:21220068..21227856- go_terms:GO:0004693 functional_description:"Cell division protein kinase 8 (AHRD V1 **** B0W1D0_CULQU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00008897g0019.1 protein AED:0.29 eAED:0.29 QI:219|1|1|1|1|1|9|34|237; (*GB) gi|388510594|gb|AFK43363.1| (e_value=6e-172) unknown [Medicago truncatula];; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=2e-173) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT1G53850.2 (e_value=2e-172) | Symbols: PAE1 | 20S proteasome alpha subunit E1 | chr1:20104131-20105792 REVERSE LENGTH=237;; (*ITAG) Solyc08g016510.2.1 (e_value=2e-177) genomic_reference:SL2.40ch08 gene_region:7616130-7622289 transcript_region:SL2.40ch08:7616130..7622289- go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6SW82_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00008897g0009.1 protein AED:0.13 eAED:0.13 QI:945|0.8|0.90|1|0.7|0.63|11|793|345; (*GB) gi|861147|emb|CAA56175.1| (e_value=2e-91) K+ channel inward rectifying [Solanum tuberosum];; (*SWP) sp|Q38849|KAT2_ARATH (e_value=4e-48) Potassium channel KAT2 OS=Arabidopsis thaliana GN=KAT2 PE=1 SV=3;; (*TAIR) AT4G18290.1 (e_value=3e-49) | Symbols: KAT2 | potassium channel in Arabidopsis thaliana 2 | chr4:10115418-10118477 FORWARD LENGTH=697;; (*ITAG) Solyc08g016500.2.1 (e_value=9e-103) genomic_reference:SL2.40ch08 gene_region:7611306-7614599 transcript_region:SL2.40ch08:7611306..7614599+ go_terms:GO:0042802 functional_description:"Potassium channel (AHRD V1 ***- Q9LEG6_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0042802 NbS00035630g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|368; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-38) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=5e-108) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00035630g0006.1 protein AED:0.38 eAED:0.44 QI:0|0|0|0.75|0.66|0.5|4|0|215; (*ITAG) Solyc08g048470.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00020281g0010.1 protein AED:0.32 eAED:0.38 QI:0|0.5|0.2|1|0.75|0.6|5|0|727; (*GB) gi|356528194|ref|XP_003532690.1| (e_value=9e-176) PREDICTED: probable serine/threonine-protein kinase At1g18390-like [Glycine max];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-171) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=8e-173) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc12g036330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30763406-30765762 transcript_region:SL2.40ch12:30763406..30765762+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020281g0004.1 protein AED:0.10 eAED:0.11 QI:1168|0.5|0.66|1|0|0.66|3|0|307; (*GB) gi|145839451|gb|ABP96804.1| (e_value=2e-139) receptor-like protein kinase [Capsicum annuum];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=4e-108) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G66980.1 (e_value=6e-112) | Symbols: SNC4 | suppressor of npr1-1 constitutive 4 | chr1:24997491-25001961 REVERSE LENGTH=1118;; (*ITAG) Solyc05g009090.1.1 (e_value=1e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3230564-3232618 transcript_region:SL2.40ch05:3230564..3232618+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00038114g0003.1 protein AED:0.66 eAED:0.78 QI:0|0|0|0.66|1|1|3|0|106 NbS00028725g0002.1 protein AED:0.23 eAED:0.25 QI:0|0|0.5|1|1|1|2|347|355; (*GB) gi|224141077|ref|XP_002323901.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT2G03630.1 (e_value=5e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:1103205-1103963 FORWARD LENGTH=252;; (*ITAG) Solyc02g088840.2.1 (e_value=3e-96) genomic_reference:SL2.40ch02 gene_region:45371895-45373561 transcript_region:SL2.40ch02:45371895..45373561+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028725g0009.1 protein AED:0.23 eAED:0.23 QI:634|0|0.33|0.66|1|1|3|0|273; (*GB) gi|255543024|ref|XP_002512575.1| (e_value=2e-33) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT3G62200.1 (e_value=4e-31) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr3:23023437-23025671 REVERSE LENGTH=673;; (*ITAG) Solyc02g088850.2.1 (e_value=5e-80) genomic_reference:SL2.40ch02 gene_region:45374604-45377259 transcript_region:SL2.40ch02:45374604..45377259- functional_description:"LOC100005105 protein (Fragment) (AHRD V1 *-*- A4QNR9_DANRE); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00028725g0017.1 protein AED:0.26 eAED:0.26 QI:65|1|0.85|1|0.83|0.85|7|506|360; (*GB) gi|356530491|ref|XP_003533814.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g17430-like [Glycine max];; (*SWP) sp|Q9LRP2|PT317_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=2 SV=1;; (*TAIR) AT3G17430.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:5966597-5968962 FORWARD LENGTH=375;; (*ITAG) Solyc02g088900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45399101-45405260 transcript_region:SL2.40ch02:45399101..45405260- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00002217g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|435; (*GB) gi|342306018|dbj|BAK55745.1| (e_value=6e-130) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q40284|UFOG1_MANES (e_value=8e-100) Anthocyanidin 3-O-glucosyltransferase 1 OS=Manihot esculenta GN=GT1 PE=2 SV=1;; (*TAIR) AT3G21780.1 (e_value=3e-75) | Symbols: UGT71B6 | UDP-glucosyl transferase 71B6 | chr3:7675051-7676490 REVERSE LENGTH=479;; (*ITAG) Solyc07g043120.1.1 (e_value=9e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54031759-54033231 transcript_region:SL2.40ch07:54031759..54033231+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00002217g0004.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|566; (*GB) gi|283362122|dbj|BAI65914.1| (e_value=4e-160) UDP-sugar:glycosyltransferase [Forsythia x intermedia];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=7e-147) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21790.1 (e_value=8e-136) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7676927-7678414 REVERSE LENGTH=495;; (*ITAG) Solyc07g043160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54117285-54118607 transcript_region:SL2.40ch07:54117285..54118607+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00002217g0002.1 protein AED:0.45 eAED:0.66 QI:0|0|0|1|1|1|3|0|148; (*GB) gi|337730998|gb|AEI70831.1| (e_value=8e-13) UDP-glucose glucosyltransferase [Helianthus annuus];; (*SWP) sp|Q9LSY8|U71B2_ARATH (e_value=4e-13) UDP-glycosyltransferase 71B2 OS=Arabidopsis thaliana GN=UGT71B2 PE=1 SV=1;; (*TAIR) AT3G21760.1 (e_value=3e-14) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043150.1.1 (e_value=1e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54092928-54094376 transcript_region:SL2.40ch07:54092928..54094376+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00002217g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|20146091|dbj|BAB88934.1| (e_value=0.0) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=2e-172) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21760.1 (e_value=9e-159) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54092928-54094376 transcript_region:SL2.40ch07:54092928..54094376+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00002217g0010.1 protein AED:0.86 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|116 NbS00002217g0009.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-28) hypothetical protein [Nicotiana tabacum]; NbS00051509g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|147834060|emb|CAN77200.1| (e_value=4e-27) hypothetical protein VITISV_009267 [Vitis vinifera];; (*ITAG) Solyc12g088840.1.1 (e_value=6e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:62498164-62498427 transcript_region:SL2.40ch12:62498164..62498427+ go_terms:GO:0005509 functional_description:"Os07g0619200 protein (Fragment) (AHRD V1 ***- Q0D4L7_ORYSJ); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00014389g0009.1 protein AED:0.13 eAED:0.13 QI:300|0.88|0.73|1|0.64|0.65|26|0|1065; (*GB) gi|225430750|ref|XP_002266705.1| (e_value=0.0) PREDICTED: nucleolar protein 6-like [Vitis vinifera];; (*SWP) sp|Q6NRY2|NOL6_XENLA (e_value=1e-100) Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2;; (*TAIR) AT1G63810.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | chr1:23669690-23675542 REVERSE LENGTH=1053;; (*ITAG) Solyc02g085230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42772382-42784801 transcript_region:SL2.40ch02:42772382..42784801- functional_description:"Nucleolar protein 6 (AHRD V1 ***- B0WP83_CULQU); contains Interpro domain(s) IPR005554 Nrap protein "; NbS00014389g0008.1 protein AED:0.24 eAED:0.25 QI:133|0.9|0.90|1|0.9|1|11|0|959; (*GB) gi|225430766|ref|XP_002267514.1| (e_value=0.0) PREDICTED: vam6/Vps39-like protein [Vitis vinifera];; (*SWP) sp|Q8R5L3|VPS39_MOUSE (e_value=6e-46) Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1;; (*TAIR) AT4G36630.1 (e_value=0.0) | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000;; (*ITAG) Solyc07g056660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61781736-61792185 transcript_region:SL2.40ch07:61781736..61792185+ go_terms:GO:0046332,GO:0005160 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 *--* TGFA1_HUMAN); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0046332,GO:0005160 NbS00014389g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|264; (*GB) gi|225430764|ref|XP_002266868.1| (e_value=1e-78) PREDICTED: methyltransferase-like protein 21B-like [Vitis vinifera];; (*TAIR) AT5G49560.1 (e_value=5e-76) | Symbols: | Putative methyltransferase family protein | chr5:20110961-20111785 REVERSE LENGTH=274;; (*ITAG) Solyc02g085210.1.1 (e_value=6e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42758702-42759487 transcript_region:SL2.40ch02:42758702..42759487+ functional_description:"UPF0567 protein C13orf39 homolog (AHRD V1 *--- CM039_MOUSE); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00058664g0011.1 protein AED:0.32 eAED:0.34 QI:0|0.5|0.2|0.8|0|0.4|5|0|381; (*GB) gi|224125912|ref|XP_002319706.1| (e_value=6e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|O64654|TRL11_ARATH (e_value=1e-83) Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1;; (*TAIR) AT1G08570.2 (e_value=4e-85) | Symbols: ACHT4 | atypical CYS HIS rich thioredoxin 4 | chr1:2713059-2714312 FORWARD LENGTH=244;; (*ITAG) Solyc10g080730.1.1 (e_value=8e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61264010-61265881 transcript_region:SL2.40ch10:61264010..61265881- go_terms:GO:0045454 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7KIT3_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00058664g0010.1 protein AED:0.35 eAED:0.39 QI:151|0.66|0.69|1|0.66|0.61|13|0|437; (*GB) gi|334702289|gb|AEG89704.1| (e_value=0.0) polypyrimidine tract-binding protein 6 [Solanum tuberosum];; (*SWP) sp|Q6ICX4|PTBP3_ARATH (e_value=0.0) Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1;; (*TAIR) AT1G43190.2 (e_value=0.0) | Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=432;; (*ITAG) Solyc10g080720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61253555-61258258 transcript_region:SL2.40ch10:61253555..61258258- go_terms:GO:0003676,GO:0000166 functional_description:"Polypyrimidine tract binding protein 1 (AHRD V1 **-- Q9BUQ0_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00012105g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0|2|300|235; (*GB) gi|77416941|gb|ABA81866.1| (e_value=4e-129) unknown [Solanum tuberosum];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=7e-87) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=5e-88) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc06g082270.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00014250g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.6|1|1|1|5|0|340; (*GB) gi|356529131|ref|XP_003533150.1| (e_value=9e-171) PREDICTED: probable pectinesterase 67-like [Glycine max];; (*SWP) sp|Q9LSP1|PME67_ARATH (e_value=5e-152) Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1;; (*TAIR) AT3G17060.1 (e_value=4e-153) | Symbols: | Pectin lyase-like superfamily protein | chr3:5816953-5818458 REVERSE LENGTH=344;; (*ITAG) Solyc12g099230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64782195-64785423 transcript_region:SL2.40ch12:64782195..64785423+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9HIN1_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00014250g0101.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|530 NbS00014250g0102.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|92 NbS00014250g0106.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|147 NbS00028180g0006.1 protein AED:0.10 eAED:0.10 QI:73|1|1|1|0.6|0.54|11|731|831; (*GB) gi|297739653|emb|CBI29835.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWS8|PP199_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1;; (*TAIR) AT2G41720.1 (e_value=0.0) | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:17403744-17407127 REVERSE LENGTH=822;; (*ITAG) Solyc04g015950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:6487752-6499059 transcript_region:SL2.40ch04:6487752..6499059+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00028180g0008.1 protein AED:0.16 eAED:0.16 QI:208|0.93|0.93|0.96|0.93|0.93|32|0|1543; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=0.0) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=0.0) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=0.0) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00036065g0002.1 protein AED:0.19 eAED:0.19 QI:89|1|1|1|0|0|2|253|119 NbS00000579g0016.1 protein AED:0.16 eAED:0.20 QI:0|0.6|0.33|0.83|0.8|0.66|6|531|246; (*GB) gi|225456735|ref|XP_002275428.1| (e_value=8e-79) PREDICTED: HVA22-like protein a [Vitis vinifera];; (*SWP) sp|Q9S7V4|HA22A_ARATH (e_value=4e-69) HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1;; (*TAIR) AT1G74520.1 (e_value=3e-70) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177;; (*ITAG) Solyc03g116350.2.1 (e_value=5e-106) genomic_reference:SL2.40ch03 gene_region:59879752-59882291 transcript_region:SL2.40ch03:59879752..59882291+ go_terms:GO:0031849,GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-* C1C4Y8_RANCA); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0031849,GO:0042802 NbS00000579g0010.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|1|1|2|0|282; (*GB) gi|350539944|ref|NP_001234586.1| (e_value=3e-120) TCP transcription factor 16 [Solanum lycopersicum];; (*SWP) sp|Q93Z00|TCP14_ARATH (e_value=3e-29) Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1;; (*TAIR) AT3G47620.1 (e_value=3e-30) | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489;; (*ITAG) Solyc03g116320.2.1 (e_value=6e-123) genomic_reference:SL2.40ch03 gene_region:59855716-59857215 transcript_region:SL2.40ch03:59855716..59857215+ functional_description:"TCP family transcription factor (AHRD V1 *-*- A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00000579g0014.1 protein AED:0.28 eAED:0.28 QI:171|1|1|1|0.75|0.6|5|367|241; (*GB) gi|93004431|gb|ABD93543.2| (e_value=1e-72) DNA-binding protein [Nicotiana tomentosiformis];; (*SWP) sp|Q9SN74|BH047_ARATH (e_value=9e-39) Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1;; (*TAIR) AT3G47640.3 (e_value=7e-40) | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:17568035-17569101 FORWARD LENGTH=240;; (*ITAG) Solyc03g116340.2.1 (e_value=1e-131) genomic_reference:SL2.40ch03 gene_region:59874395-59877786 transcript_region:SL2.40ch03:59874395..59877786+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00000579g0015.1 protein AED:0.36 eAED:0.36 QI:0|1|0.8|1|0.88|1|10|429|302; (*GB) gi|356516786|ref|XP_003527074.1| (e_value=1e-152) PREDICTED: uncharacterized protein LOC100791859 [Glycine max];; (*TAIR) AT1G74530.3 (e_value=9e-130) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:28009723-28012044 REVERSE LENGTH=314;; (*ITAG) Solyc03g116330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59867711-59873429 transcript_region:SL2.40ch03:59867711..59873429+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q014A6_OSTTA)"; NbC24341070g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|0|1|0|136; (*GB) gi|359480844|ref|XP_002276745.2| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100252593 [Vitis vinifera];; (*TAIR) AT4G39680.2 (e_value=1e-11) | Symbols: | SAP domain-containing protein | chr4:18414604-18416938 REVERSE LENGTH=633; NbS00037477g0003.1 protein AED:0.18 eAED:0.19 QI:12|0.57|0.75|1|0.71|0.62|8|663|266; (*GB) gi|224106772|ref|XP_002314280.1| (e_value=9e-121) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28310.3 (e_value=2e-116) | Symbols: | Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374;; (*ITAG) Solyc11g069550.1.1 (e_value=1e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51250786-51256286 transcript_region:SL2.40ch11:51250786..51256286- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00010601g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|4|0|171; (*GB) gi|224138464|ref|XP_002326609.1| (e_value=3e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=8e-84) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=6e-85) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=3e-101) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbS00009121g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|0.75|0.33|0.25|4|0|384; (*GB) gi|359476838|ref|XP_002266706.2| (e_value=2e-171) PREDICTED: NAC domain-containing protein 7-like [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=4e-93) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT2G18060.1 (e_value=1e-146) | Symbols: VND1, ANAC037 | vascular related NAC-domain protein 1 | chr2:7848399-7850303 REVERSE LENGTH=365;; (*ITAG) Solyc02g084350.2.1 (e_value=2e-171) genomic_reference:SL2.40ch02 gene_region:42041409-42043859 transcript_region:SL2.40ch02:42041409..42043859- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HFJ5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00011592g0009.1 protein AED:0.03 eAED:0.03 QI:314|0.75|0.8|1|1|1|5|291|357; (*GB) gi|224093236|ref|XP_002334852.1| (e_value=3e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJ45|GDL83_ARATH (e_value=2e-108) GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana GN=At5g45910 PE=2 SV=1;; (*TAIR) AT5G45910.1 (e_value=2e-109) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18620420-18622264 REVERSE LENGTH=372;; (*ITAG) Solyc03g006240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:859202-863017 transcript_region:SL2.40ch03:859202..863017- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45910 (AHRD V1 ***- GDL83_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00011592g0008.1 protein AED:0.00 eAED:0.00 QI:398|1|1|1|1|1|3|331|169; (*GB) gi|357446949|ref|XP_003593750.1| (e_value=2e-90) hypothetical protein MTR_2g015720 [Medicago truncatula];; (*TAIR) AT1G29050.1 (e_value=2e-87) | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38 | chr1:10136376-10139082 REVERSE LENGTH=380;; (*ITAG) Solyc03g006220.2.1 (e_value=1e-111) genomic_reference:SL2.40ch03 gene_region:848503-853887 transcript_region:SL2.40ch03:848503..853887+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00011592g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|550; (*GB) gi|255563090|ref|XP_002522549.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18540.1 (e_value=2e-174) | Symbols: | unknown protein; Has 209 Blast hits to 205 proteins in 54 species: Archae - 0; Bacteria - 17; Metazoa - 2; Fungi - 150; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10221203-10223028 REVERSE LENGTH=520;; (*ITAG) Solyc03g006230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:857390-859081 transcript_region:SL2.40ch03:857390..859081+ functional_description:"Integral membrane protein TmpA (AHRD V1 **-- B8N2M4_ASPFN)"; NbS00012972g0007.1 protein AED:0.12 eAED:0.12 QI:91|1|1|1|0.90|0.83|12|326|521; (*GB) gi|224092216|ref|XP_002309513.1| (e_value=0.0) serine hydroxymethyltransferase 8 [Populus trichocarpa];; (*SWP) sp|Q9SZJ5|GLYM_ARATH (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1;; (*TAIR) AT4G32520.2 (e_value=0.0) | Symbols: SHM3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529;; (*ITAG) Solyc08g065490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50811507-50815744 transcript_region:SL2.40ch08:50811507..50815744- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9S1D7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00012972g0006.1 protein AED:0.29 eAED:0.29 QI:161|0.88|0.8|1|0.77|0.8|10|962|204; (*GB) gi|197312903|gb|ACH63232.1| (e_value=1e-134) hypothetical protein [Rheum australe];; (*SWP) sp|Q9GZP4|PITH1_HUMAN (e_value=1e-42) PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1 SV=1;; (*TAIR) AT2G25950.1 (e_value=6e-128) | Symbols: | Protein of unknown function (DUF1000) | chr2:11068735-11070524 FORWARD LENGTH=204;; (*ITAG) Solyc08g065640.2.1 (e_value=8e-146) genomic_reference:SL2.40ch08 gene_region:51051346-51059767 transcript_region:SL2.40ch08:51051346..51059767- functional_description:"Thioredoxin-like protein (AHRD V1 **-- Q2UPJ7_ASPOR); contains Interpro domain(s) IPR010400 Protein of unknown function DUF1000 "; NbC25585557g0003.1 protein AED:0.44 eAED:0.54 QI:24|0.5|0|1|0.5|0.66|3|0|98; (*GB) gi|225458281|ref|XP_002281422.1| (e_value=5e-30) PREDICTED: cytosolic purine 5'-nucleotidase [Vitis vinifera];; (*TAIR) AT1G75210.1 (e_value=3e-30) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr1:28223990-28228751 FORWARD LENGTH=642;; (*ITAG) Solyc04g080430.2.1 (e_value=1e-35) genomic_reference:SL2.40ch04 gene_region:62193893-62203160 transcript_region:SL2.40ch04:62193893..62203160+ go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-Nucleotidase (AHRD V1 **** C1FIJ4_9CHLO); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00028552g0005.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|8|508|441; (*GB) gi|224130512|ref|XP_002320855.1| (e_value=3e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M158|STR4_ARATH (e_value=3e-129) Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2;; (*TAIR) AT4G01050.1 (e_value=2e-130) | Symbols: TROL | thylakoid rhodanese-like | chr4:455874-458175 FORWARD LENGTH=466;; (*ITAG) Solyc01g095670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78628729-78632811 transcript_region:SL2.40ch01:78628729..78632811- go_terms:GO:0005515 functional_description:"Rhodanese-related sulfurtransferase (AHRD V1 *--- A0NUG1_9RHOB); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0005515 NbS00014551g0003.1 protein AED:0.22 eAED:0.25 QI:0|0.4|0.5|1|1|1|6|205|633; (*GB) gi|350535533|ref|NP_001234711.1| (e_value=0.0) protein SUPPRESSOR OF GENE SILENCING 3 [Solanum lycopersicum];; (*SWP) sp|A5YVF1|SGS3_SOLLC (e_value=0.0) Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1;; (*TAIR) AT5G23570.1 (e_value=1e-151) | Symbols: SGS3, ATSGS3 | XS domain-containing protein / XS zinc finger domain-containing protein-related | chr5:7943621-7945874 FORWARD LENGTH=625;; (*ITAG) Solyc04g025300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:19194330-19198117 transcript_region:SL2.40ch04:19194330..19198117- functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 ***- SGS3_SOLLC)"; NbS00007057g0008.1 protein AED:0.29 eAED:0.30 QI:0|0.33|0|0.75|0.33|0.75|4|0|226; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00007057g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|359481983|ref|XP_002283401.2| (e_value=6e-41) PREDICTED: ethylene-responsive transcription factor ERF024 [Vitis vinifera];; (*SWP) sp|Q9SJR0|ERF24_ARATH (e_value=2e-33) Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1;; (*TAIR) AT2G36450.1 (e_value=2e-34) | Symbols: HRD | Integrase-type DNA-binding superfamily protein | chr2:15294303-15294857 REVERSE LENGTH=184;; (*ITAG) Solyc09g009240.1.1 (e_value=6e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2617577-2618185 transcript_region:SL2.40ch09:2617577..2618185- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-** ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00062255g0004.1 protein AED:0.02 eAED:0.07 QI:0|0.5|0|1|0.5|0.33|3|0|349; (*GB) gi|224067838|ref|XP_002302558.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g091830.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:77142469-77144729 transcript_region:SL2.40ch01:77142469..77144729+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020438g0007.1 protein AED:0.19 eAED:0.19 QI:164|0.8|0.72|0.90|0.6|0.81|11|0|381; (*GB) gi|5824321|emb|CAB54139.1| (e_value=0.0) ATPase [Solanum tuberosum];; (*SWP) sp|O27555|ARSA_METTH (e_value=6e-49) Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1;; (*TAIR) AT3G10350.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411;; (*ITAG) Solyc04g025160.2.1 (e_value=5e-180) genomic_reference:SL2.40ch04 gene_region:18084887-18090843 transcript_region:SL2.40ch04:18084887..18090843- go_terms:GO:0005515,GO:0015105 functional_description:"Arsenite ATPase transporter (Eurofung) (AHRD V1 **** C8VJ74_EMENI); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515,GO:0015105 NbS00020438g0002.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|1|1|4|0|496; (*GB) gi|147828480|emb|CAN64316.1| (e_value=0.0) hypothetical protein VITISV_027915 [Vitis vinifera];; (*SWP) sp|P0C8Q5|PP336_ARATH (e_value=1e-159) Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1;; (*TAIR) AT4G22760.1 (e_value=9e-161) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11960553-11962289 FORWARD LENGTH=578;; (*ITAG) Solyc10g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1190015-1191748 transcript_region:SL2.40ch10:1190015..1191748+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ME07_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00061728g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|540; (*GB) gi|225444135|ref|XP_002268361.1| (e_value=0.0) PREDICTED: reticuline oxidase-like protein [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-141) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30760.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr1:10918321-10920441 FORWARD LENGTH=534;; (*ITAG) Solyc09g072660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60769532-60771866 transcript_region:SL2.40ch09:60769532..60771866- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFP2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00046450g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|574; (*GB) gi|255549456|ref|XP_002515781.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40319876-40322691 transcript_region:SL2.40ch02:40319876..40322691+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00046450g0015.1 protein AED:0.06 eAED:0.06 QI:0|0.25|0|0.6|0.25|0.2|5|0|607; (*GB) gi|296085423|emb|CBI29155.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=3e-172) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=2e-173) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40319876-40322691 transcript_region:SL2.40ch02:40319876..40322691+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00046450g0014.1 protein AED:0.29 eAED:0.29 QI:161|1|1|1|0.75|0.6|5|382|152; (*GB) gi|81076490|gb|ABB55394.1| (e_value=2e-104) 40S ribosomal protein S15-like [Solanum tuberosum];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=4e-95) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09500.1 (e_value=2e-90) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc02g082000.2.1 (e_value=1e-104) genomic_reference:SL2.40ch02 gene_region:40322179-40324715 transcript_region:SL2.40ch02:40322179..40324715- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_BRAHW); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00058566g0005.1 protein AED:0.27 eAED:0.27 QI:148|0.88|0.9|1|0.66|0.8|10|289|374; (*GB) gi|225430151|ref|XP_002284747.1| (e_value=0.0) PREDICTED: 26S protease regulatory subunit 8 homolog A [Vitis vinifera];; (*SWP) sp|Q9C5U3|PRS8A_ARATH (e_value=0.0) 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1;; (*TAIR) AT5G19990.1 (e_value=0.0) | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A ATPase 6A | chr5:6752144-6754918 FORWARD LENGTH=419;; (*ITAG) Solyc05g018570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22252361-22260280 transcript_region:SL2.40ch05:22252361..22260280- go_terms:GO:0005524,GO:0005737,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog A (AHRD V1 ***- PRS8A_ARATH); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0005737,GO:0017111 NbS00040422g0004.1 protein AED:0.11 eAED:0.12 QI:0|0.85|0.75|1|1|1|8|0|403; (*GB) gi|225428701|ref|XP_002281817.1| (e_value=1e-119) PREDICTED: uncharacterized protein LOC100241743 [Vitis vinifera];; (*SWP) sp|Q05CL8|LARP7_MOUSE (e_value=6e-11) La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2;; (*TAIR) AT3G19090.1 (e_value=9e-82) | Symbols: | RNA-binding protein | chr3:6601466-6603709 FORWARD LENGTH=455;; (*ITAG) Solyc10g050550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:45497364-45500395 transcript_region:SL2.40ch10:45497364..45500395- go_terms:GO:0003676,GO:0000166 functional_description:"La-related protein 7 (AHRD V1 *--- LARP7_MOUSE); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0000166 NbS00009234g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.2|1|1|5|0|123; (*GB) gi|255565822|ref|XP_002523900.1| (e_value=5e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51960.1 (e_value=2e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:21110716-21111116 FORWARD LENGTH=103;; (*ITAG) Solyc07g065720.2.1 (e_value=3e-41) genomic_reference:SL2.40ch07 gene_region:64613833-64616777 transcript_region:SL2.40ch07:64613833..64616777- functional_description:"Os11g0133900 protein (Fragment) (AHRD V1 ***- Q0IUU7_ORYSJ); contains Interpro domain(s) IPR018471 ATP synthase assembly factor FMC1, mitochondrial "; NbS00009234g0008.1 protein AED:0.09 eAED:0.29 QI:0|0.66|0.5|1|0|0|4|615|1772; (*GB) gi|147819118|emb|CAN75603.1| (e_value=0.0) hypothetical protein VITISV_016382 [Vitis vinifera];; (*TAIR) AT3G09670.2 (e_value=1e-64) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726;; (*ITAG) Solyc04g049950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:44036710-44038071 transcript_region:SL2.40ch04:44036710..44038071+ functional_description:"PWWP domain protein-like (AHRD V1 *-*- Q6Z3Y5_ORYSJ)"; NbS00009234g0109.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.33|0.83|0.2|0.33|6|0|228 NbS00035818g0015.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.14|1|0.66|0.85|7|381|575; (*GB) gi|225469988|ref|XP_002277785.1| (e_value=0.0) PREDICTED: tonoplast dicarboxylate transporter-like [Vitis vinifera];; (*SWP) sp|Q8LG88|TDT_ARATH (e_value=0.0) Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2;; (*TAIR) AT5G47560.1 (e_value=0.0) | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxylate transporter | chr5:19287895-19290347 REVERSE LENGTH=540;; (*ITAG) Solyc11g012360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5208388-5212579 transcript_region:SL2.40ch11:5208388..5212579+ go_terms:GO:0016020 functional_description:"Sodium-dependent dicarboxylate transporter (AHRD V1 ***- O35055_RAT); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0016020 NbS00035818g0002.1 protein AED:0.45 eAED:0.48 QI:0|0|0.33|1|1|1|3|0|210; (*GB) gi|255583933|ref|XP_002532714.1| (e_value=7e-84) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=3e-67) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=3e-68) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=2e-99) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00035818g0017.1 protein AED:0.26 eAED:0.26 QI:126|0|0.5|1|1|1|2|0|142 NbS00035818g0021.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|230; (*GB) gi|255583933|ref|XP_002532714.1| (e_value=1e-48) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=2e-16) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=1e-17) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=1e-66) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00035818g0019.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|0|0|3|0|62 NbS00020988g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|12003400|gb|AAG43557.1|AF211539_1 (e_value=2e-27) Avr9/Cf-9 rapidly elicited protein 65 [Nicotiana tabacum];; (*ITAG) Solyc03g081330.1.1 (e_value=4e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45743175-45743453 transcript_region:SL2.40ch03:45743175..45743453- functional_description:"Avr9/Cf-9 rapidly elicited protein 65 (AHRD V1 ***- Q9FQZ0_TOBAC)"; NbS00027269g0004.1 protein AED:0.34 eAED:0.34 QI:253|0.5|1|1|1|1|3|204|84; (*GB) gi|357514531|ref|XP_003627554.1| (e_value=1e-20) Ubiquitin carrier protein [Medicago truncatula];; (*SWP) sp|P16577|UBC4_WHEAT (e_value=2e-20) Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1;; (*TAIR) AT1G63800.1 (e_value=2e-19) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc01g094810.2.1 (e_value=8e-24) genomic_reference:SL2.40ch01 gene_region:77982018-77985335 transcript_region:SL2.40ch01:77982018..77985335- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 **** D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0004842 NbS00011577g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|6|0|244; (*GB) gi|225465012|ref|XP_002264748.1| (e_value=2e-128) PREDICTED: 3-mercaptopyruvate sulfurtransferase [Vitis vinifera];; (*SWP) sp|O64530|STR1_ARATH (e_value=7e-111) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.1 (e_value=5e-112) | Symbols: ST1, ATMST1, MST1, ATRDH1, STR1 | mercaptopyruvate sulfurtransferase 1 | chr1:29800824-29803679 FORWARD LENGTH=379;; (*ITAG) Solyc07g066580.2.1 (e_value=1e-126) genomic_reference:SL2.40ch07 gene_region:65198760-65204479 transcript_region:SL2.40ch07:65198760..65204479+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like IPR001307 Thiosulphate sulfurtransferase, conserved site "; GO:0004792,GO:0016784 NbS00016027g0004.1 protein AED:0.29 eAED:0.31 QI:434|1|0.66|1|0.8|0.66|6|0|112; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=8e-53) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=2e-45) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc09g091120.2.1 (e_value=2e-65) genomic_reference:SL2.40ch09 gene_region:65814321-65825428 transcript_region:SL2.40ch09:65814321..65825428- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00017095g0011.1 protein AED:0.20 eAED:0.20 QI:518|1|0.5|1|1|1|2|0|264; (*GB) gi|296089159|emb|CBI38862.3| (e_value=5e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LPC4|PPR1_ARATH (e_value=3e-113) Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1;; (*TAIR) AT1G01970.1 (e_value=2e-114) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:338538-339905 FORWARD LENGTH=409;; (*ITAG) Solyc01g091450.2.1 (e_value=2e-162) genomic_reference:SL2.40ch01 gene_region:76821359-76826601 transcript_region:SL2.40ch01:76821359..76826601- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005955g0011.1 protein AED:0.31 eAED:0.63 QI:0|0|0|0.5|0.33|0.25|4|0|206; (*GB) gi|57013936|ref|YP_173409.1| (e_value=6e-42) ribosomal protein S19 [Nicotiana tabacum];; (*SWP) sp|P27527|RT19_PETHY (e_value=8e-38) Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2;; (*TAIR) AT5G47320.1 (e_value=1e-25) | Symbols: RPS19 | ribosomal protein S19 | chr5:19203801-19204951 FORWARD LENGTH=212;; (*ITAG) Solyc11g056480.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43155644-43156396 transcript_region:SL2.40ch11:43155644..43156396+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- D0GL35_9FUSO); contains Interpro domain(s) IPR002222 Ribosomal protein S19/S15 "; GO:0005840 NbS00005955g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|138 NbC25726108g0004.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|224110788|ref|XP_002315636.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LU91|SKI14_ARATH (e_value=1e-15) F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1;; (*TAIR) AT3G26000.1 (e_value=1e-16) | Symbols: | Ribonuclease inhibitor | chr3:9507042-9508542 REVERSE LENGTH=453;; (*ITAG) Solyc02g068000.2.1 (e_value=2e-55) genomic_reference:SL2.40ch02 gene_region:32643742-32646983 transcript_region:SL2.40ch02:32643742..32646983+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 *-*- D7LQX6_ARALY)"; GO:0005515 NbS00001972g0010.1 protein AED:0.00 eAED:0.00 QI:157|1|1|1|0|0.5|2|42|175 NbS00001972g0014.1 protein AED:0.46 eAED:0.61 QI:0|0|0|0.66|1|1|3|0|75 NbS00001972g0009.1 protein AED:0.49 eAED:0.50 QI:0|0|0|0.4|0.25|0.2|5|0|220; (*GB) gi|255548626|ref|XP_002515369.1| (e_value=1e-21) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|P0DH85|REM10_ARATH (e_value=4e-18) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=3e-19) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc08g006190.1.1 (e_value=1e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:894407-897998 transcript_region:SL2.40ch08:894407..897998+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 *-*- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00001972g0013.1 protein AED:0.29 eAED:0.35 QI:0|0|0|1|0|0|2|0|127; (*GB) gi|47825035|gb|AAT38805.1| (e_value=1e-27) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc01g056420.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47014669-47015578 transcript_region:SL2.40ch01:47014669..47015578- go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00001972g0012.1 protein AED:0.51 eAED:0.78 QI:0|0|0|1|0|0|2|0|65 NbS00029828g0001.1 protein AED:0.13 eAED:0.13 QI:253|0.66|1|1|1|1|4|497|229; (*GB) gi|255582802|ref|XP_002532175.1| (e_value=4e-108) Protein transport protein SFT2, putative [Ricinus communis];; (*SWP) sp|P38166|SFT2_YEAST (e_value=8e-14) Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1;; (*TAIR) AT4G26550.1 (e_value=1e-103) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr4:13402755-13404208 REVERSE LENGTH=225;; (*ITAG) Solyc07g065850.2.1 (e_value=6e-138) genomic_reference:SL2.40ch07 gene_region:64670688-64674534 transcript_region:SL2.40ch07:64670688..64674534+ go_terms:GO:0042802 functional_description:"Transport protein SFT2 (AHRD V1 *--- C9SJZ4_VERA1); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0042802 NbS00011588g0207.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|0.5|0.33|3|63|505 NbS00011588g0313.1 protein AED:0.20 eAED:0.20 QI:360|1|1|1|0.75|0.77|9|386|507 NbS00011588g0317.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.85|1|1|1|7|198|240 NbS00011588g0319.1 protein AED:0.10 eAED:0.10 QI:122|0.6|0.5|1|0.6|0.33|6|0|569 NbS00010090g0004.1 protein AED:0.13 eAED:0.13 QI:424|1|0.93|1|0.71|0.6|15|323|385; (*GB) gi|255583646|ref|XP_002532578.1| (e_value=0.0) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q9SUW0|TPPG_ARATH (e_value=0.0) Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana GN=TPPG PE=2 SV=1;; (*TAIR) AT4G22590.1 (e_value=0.0) | Symbols: TPPG | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:11893707-11895371 REVERSE LENGTH=377;; (*ITAG) Solyc08g079060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59876550-59879243 transcript_region:SL2.40ch08:59876550..59879243+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 ***- D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00026756g0004.1 protein AED:0.35 eAED:0.38 QI:347|0.5|0.8|1|0.25|0.4|5|266|138; (*GB) gi|224110756|ref|XP_002315626.1| (e_value=9e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67600.1 (e_value=4e-41) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr1:25336701-25337455 REVERSE LENGTH=163;; (*ITAG) Solyc04g024340.2.1 (e_value=8e-53) genomic_reference:SL2.40ch04 gene_region:11605227-11613735 transcript_region:SL2.40ch04:11605227..11613735- functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 ***- B6TSR4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00060698g0013.1 protein AED:0.22 eAED:0.29 QI:0|0|0|1|0.5|0.66|3|0|162 NbS00055337g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|3|0|202; (*GB) gi|356533546|ref|XP_003535324.1| (e_value=4e-70) PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Glycine max];; (*SWP) sp|O80488|PPR23_ARATH (e_value=2e-56) Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1;; (*TAIR) AT1G09190.1 (e_value=1e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2966263-2967717 REVERSE LENGTH=484;; (*ITAG) Solyc01g100340.2.1 (e_value=4e-80) genomic_reference:SL2.40ch01 gene_region:82170492-82172089 transcript_region:SL2.40ch01:82170492..82172089+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIZ3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00055337g0011.1 protein AED:0.11 eAED:0.13 QI:0|0.87|0.82|1|0.81|0.82|17|407|663; (*GB) gi|193290728|gb|ACF17672.1| (e_value=0.0) putative pyruvate dehydrogenase E3 subunit [Capsicum annuum];; (*SWP) sp|P72740|DLDH_SYNY3 (e_value=0.0) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lpdA PE=1 SV=3;; (*TAIR) AT3G16950.2 (e_value=0.0) | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase 1 | chr3:5786508-5790383 REVERSE LENGTH=623;; (*ITAG) Solyc01g100360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82177485-82184781 transcript_region:SL2.40ch01:82177485..82184781- go_terms:GO:0005737,GO:0055114 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- B5LAW5_CAPAN); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005737,GO:0055114 NbS00055337g0012.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|1|1|3|343|193; (*GB) gi|6563322|gb|AAF17254.1|AF210431_1 (e_value=2e-132) small GTP-binding protein Sar1BNt [Nicotiana tabacum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=2e-127) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=1e-128) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc01g100350.2.1 (e_value=8e-133) genomic_reference:SL2.40ch01 gene_region:82173471-82176296 transcript_region:SL2.40ch01:82173471..82176296- go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00014276g0009.1 protein AED:0.04 eAED:0.04 QI:346|1|1|1|0.5|0.66|3|390|193; (*GB) gi|255574288|ref|XP_002528058.1| (e_value=7e-109) anti-silencing protein, putative [Ricinus communis];; (*SWP) sp|Q9C9M6|ASF1A_ARATH (e_value=3e-100) Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1;; (*TAIR) AT1G66740.1 (e_value=2e-101) | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone chaperone | chr1:24892586-24893548 FORWARD LENGTH=196;; (*ITAG) Solyc02g091110.2.1 (e_value=4e-117) genomic_reference:SL2.40ch02 gene_region:47097884-47100605 transcript_region:SL2.40ch02:47097884..47100605- go_terms:GO:0042393 functional_description:"Histone chaperone ASF1-like protein (AHRD V1 **** D0NV04_PHYIN); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00014276g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|69; (*ITAG) Solyc12g044970.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00014276g0004.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|109 NbS00014276g0008.1 protein AED:0.17 eAED:0.17 QI:437|1|1|1|1|1|6|414|254; (*GB) gi|225462811|ref|XP_002267248.1| (e_value=6e-28) PREDICTED: uncharacterized protein LOC100266821 [Vitis vinifera];; (*TAIR) AT1G60640.2 (e_value=6e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:22337534-22339513 REVERSE LENGTH=340;; (*ITAG) Solyc02g063280.2.1 (e_value=7e-89) genomic_reference:SL2.40ch02 gene_region:29931694-29934377 transcript_region:SL2.40ch02:29931694..29934377+ functional_description:"Unknown Protein (AHRD V1)"; NbC25044428g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|141; (*GB) gi|296081597|emb|CBI20602.3| (e_value=3e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11700.2 (e_value=1e-70) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=4e-79) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00036148g0004.1 protein AED:0.03 eAED:0.03 QI:65|1|1|1|1|1|4|39|255; (*GB) gi|6683537|dbj|BAA89235.1| (e_value=9e-170) unnamed protein product [Nicotiana tabacum];; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=2e-66) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1;; (*TAIR) AT1G80840.1 (e_value=2e-67) | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302;; (*ITAG) Solyc08g067360.2.1 (e_value=1e-130) genomic_reference:SL2.40ch08 gene_region:53615717-53617791 transcript_region:SL2.40ch08:53615717..53617791+ go_terms:GO:0003700,GO:0042802 functional_description:"WRKY transcription factor 9 (AHRD V1 **** C9DHZ8_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0042802 NbS00028194g0003.1 protein AED:0.14 eAED:0.14 QI:253|0.85|1|1|0.85|1|8|319|188; (*GB) gi|45433317|emb|CAD27462.1| (e_value=8e-67) nucleosome assembly protein 1-like protein 3 [Nicotiana tabacum];; (*SWP) sp|O59797|YCO6_SCHPO (e_value=2e-15) Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1;; (*TAIR) AT4G26110.2 (e_value=3e-60) | Symbols: NAP1;1 | nucleosome assembly protein1;1 | chr4:13232712-13235060 FORWARD LENGTH=359;; (*ITAG) Solyc12g008940.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00056940g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.4|1|0.5|0.6|5|0|339; (*GB) gi|356508549|ref|XP_003523018.1| (e_value=2e-176) PREDICTED: GDSL esterase/lipase At1g74460-like [Glycine max];; (*SWP) sp|Q9CA68|GDL31_ARATH (e_value=1e-164) GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1;; (*TAIR) AT1G74460.1 (e_value=1e-165) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:27988150-27989765 REVERSE LENGTH=366;; (*ITAG) Solyc03g115960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59581474-59583094 transcript_region:SL2.40ch03:59581474..59583094- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g74460 (AHRD V1 ***- GDL31_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00056940g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|75216452|sp|Q9ZS34.1|CHLP_TOBAC (e_value=0.0) RecName: Full=Geranylgeranyl diphosphate reductase, chloroplastic; AltName: Full=Geranylgeranyl reductase; Flags: Precursor;; (*SWP) sp|Q9ZS34|CHLP_TOBAC (e_value=0.0) Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1;; (*TAIR) AT1G74470.1 (e_value=0.0) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr1:27991248-27992845 FORWARD LENGTH=467;; (*ITAG) Solyc03g115980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59589011-59590405 transcript_region:SL2.40ch03:59589011..59590405+ go_terms:GO:0005515 functional_description:"Geranylgeranyl reductase (AHRD V1 ***- Q1ZYL0_OLEEU); contains Interpro domain(s) IPR011774 Geranylgeranyl reductase, plants and cyanobacteria "; GO:0005515 NbC24366726g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|80; (*GB) gi|255550026|ref|XP_002516064.1| (e_value=9e-36) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q39086|SD17_ARATH (e_value=9e-35) Receptor-like serine/threonine-protein kinase SD1-7 OS=Arabidopsis thaliana GN=SD17 PE=1 SV=1;; (*TAIR) AT1G65790.1 (e_value=7e-36) | Symbols: ARK1, RK1 | receptor kinase 1 | chr1:24468932-24472329 FORWARD LENGTH=843;; (*ITAG) Solyc12g006840.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1254397-1257951 transcript_region:SL2.40ch12:1254397..1257951+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00004510g0005.1 protein AED:0.11 eAED:0.11 QI:167|1|1|1|1|1|2|119|266; (*GB) gi|37572447|dbj|BAC98493.1| (e_value=1e-80) AG-motif binding protein-3 [Nicotiana tabacum];; (*SWP) sp|O49741|GATA2_ARATH (e_value=7e-58) GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2 SV=1;; (*TAIR) AT2G45050.1 (e_value=5e-59) | Symbols: GATA2 | GATA transcription factor 2 | chr2:18582958-18583845 FORWARD LENGTH=264;; (*ITAG) Solyc10g018560.1.1 (e_value=5e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8688626-8690141 transcript_region:SL2.40ch10:8688626..8690141+ go_terms:GO:0031013,GO:0030674 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0031013,GO:0030674 NbS00004510g0006.1 protein AED:0.20 eAED:0.20 QI:188|0.71|0.75|0.87|0|0|8|0|236; (*GB) gi|225460933|ref|XP_002279440.1| (e_value=3e-65) PREDICTED: mutS protein homolog 5-like [Vitis vinifera];; (*TAIR) AT3G20475.1 (e_value=2e-61) | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143546-7150811 FORWARD LENGTH=807;; (*ITAG) Solyc10g018540.1.1 (e_value=1e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8654988-8661854 transcript_region:SL2.40ch10:8654988..8661854- go_terms:GO:0006298 functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-*- A6DUF8_9BACT); contains Interpro domain(s) IPR007696 DNA mismatch repair protein MutS, core "; GO:0006298 NbS00033185g0001.1 protein AED:0.38 eAED:0.63 QI:422|1|0.5|1|0|0|2|0|168; (*GB) gi|255554467|ref|XP_002518272.1| (e_value=4e-41) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G30380.1 (e_value=4e-29) | Symbols: | Plant protein of unknown function (DUF641) | chr2:12948284-12950573 FORWARD LENGTH=519;; (*ITAG) Solyc01g091120.2.1 (e_value=5e-14) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00033185g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|255554469|ref|XP_002518273.1| (e_value=4e-49) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G30395.1 (e_value=2e-35) | Symbols: ATOFP17, OFP17 | ovate family protein 17 | chr2:12954409-12955083 REVERSE LENGTH=195;; (*ITAG) Solyc01g090870.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76350142-76350666 transcript_region:SL2.40ch01:76350142..76350666+ functional_description:"ATOFP17/OFP17 (AHRD V1 ***- D7LBN3_ARALY)"; NbS00040666g0004.1 protein AED:0.36 eAED:0.37 QI:27|0.66|0.69|0.92|0.41|0.53|13|0|407; (*GB) gi|359491112|ref|XP_003634223.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 7-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q0E0Y3|PUS7_ORYSJ (e_value=0.0) RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2;; (*TAIR) AT5G51140.1 (e_value=2e-160) | Symbols: | Pseudouridine synthase family protein | chr5:20784277-20786793 REVERSE LENGTH=395;; (*ITAG) Solyc03g097550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53324402-53332524 transcript_region:SL2.40ch03:53324402..53332524+ go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451,GO:0003723 NbS00061091g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|70; (*GB) gi|255580750|ref|XP_002531196.1| (e_value=4e-34) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SJB4|GDL34_ARATH (e_value=1e-33) GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1;; (*TAIR) AT2G04570.1 (e_value=9e-35) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350;; (*ITAG) Solyc07g049440.2.1 (e_value=3e-41) genomic_reference:SL2.40ch07 gene_region:57033056-57036399 transcript_region:SL2.40ch07:57033056..57036399+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g04570 (AHRD V1 ***- GDL34_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00031476g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|373; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=2e-110) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*SWP) sp|O22042|M3K3_ARATH (e_value=1e-39) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3 PE=1 SV=1;; (*TAIR) AT4G36950.1 (e_value=5e-103) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc02g090970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47002477-47003559 transcript_region:SL2.40ch02:47002477..47003559+ go_terms:GO:0008545 functional_description:"Serine/threonine-protein kinase 24 (AHRD V1 **** STK24_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00048337g0001.1 protein AED:0.17 eAED:0.17 QI:324|0.66|0.71|0.85|0.66|0.71|7|0|128; (*GB) gi|147766282|emb|CAN74459.1| (e_value=2e-39) hypothetical protein VITISV_012710 [Vitis vinifera];; (*SWP) sp|Q8GW46|YAB5_ARATH (e_value=4e-29) Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1;; (*TAIR) AT2G26580.2 (e_value=3e-30) | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164;; (*ITAG) Solyc07g008180.2.1 (e_value=8e-49) genomic_reference:SL2.40ch07 gene_region:2916878-2921216 transcript_region:SL2.40ch07:2916878..2921216+ go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00044851g0011.1 protein AED:0.16 eAED:0.16 QI:8|1|1|1|1|1|4|266|413; (*GB) gi|2500517|sp|Q40471.1|IF4A9_TOBAC (e_value=0.0) RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9; AltName: Full=ATP-dependent RNA helicase eIF4A-9;; (*SWP) sp|Q40471|IF4A9_TOBAC (e_value=0.0) Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=0.0) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc12g095990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63417253-63419388 transcript_region:SL2.40ch12:63417253..63419388- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00044851g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.72|0.58|1|0.72|0.83|12|253|354; (*GB) gi|359484301|ref|XP_002281247.2| (e_value=7e-141) PREDICTED: eukaryotic initiation factor 4A-15-like [Vitis vinifera];; (*SWP) sp|Q8L4M1|DWA1_ARATH (e_value=9e-112) WD repeat-containing protein DWA1 OS=Arabidopsis thaliana GN=DWA1 PE=1 SV=1;; (*TAIR) AT2G19430.1 (e_value=7e-113) | Symbols: DWA1, THO6, AtTHO6 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 | chr2:8415217-8417740 FORWARD LENGTH=367;; (*ITAG) Solyc07g040790.2.1 (e_value=4e-146) genomic_reference:SL2.40ch07 gene_region:47050369-47067990 transcript_region:SL2.40ch07:47050369..47067990- go_terms:GO:0005515,GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- B0C6X5_ACAM1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00044851g0009.1 protein AED:0.26 eAED:0.26 QI:63|1|1|1|1|1|6|307|277; (*GB) gi|224122558|ref|XP_002330511.1| (e_value=5e-104) single myb histone [Populus trichocarpa];; (*SWP) sp|F4I7L1|TRB4_ARATH (e_value=3e-65) Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2;; (*TAIR) AT1G17520.1 (e_value=8e-67) | Symbols: | Homeodomain-like/winged-helix DNA-binding family protein | chr1:6024959-6027224 REVERSE LENGTH=296;; (*ITAG) Solyc07g040920.2.1 (e_value=9e-100) genomic_reference:SL2.40ch07 gene_region:48363439-48368725 transcript_region:SL2.40ch07:48363439..48368725- go_terms:GO:0003691,GO:0043047 functional_description:"Single myb histone (AHRD V1 **-* B9N5F4_POPTR); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0003691,GO:0043047 NbS00033266g0006.1 protein AED:0.09 eAED:0.10 QI:172|1|0.5|1|0|0|2|0|453; (*GB) gi|356499663|ref|XP_003518656.1| (e_value=9e-69) PREDICTED: uncharacterized protein LOC100787520 [Glycine max];; (*TAIR) AT5G13660.2 (e_value=7e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4405094-4406983 FORWARD LENGTH=537;; (*ITAG) Solyc09g010350.2.1 (e_value=2e-44) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00033266g0005.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.66|0.5|0.66|3|0|106; (*GB) gi|356499663|ref|XP_003518656.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100787520 [Glycine max];; (*TAIR) AT5G13660.2 (e_value=3e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4405094-4406983 FORWARD LENGTH=537;; (*ITAG) Solyc09g010350.2.1 (e_value=2e-41) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00017498g0007.1 protein AED:0.21 eAED:0.21 QI:74|1|1|1|1|1|3|444|120; (*GB) gi|225445883|ref|XP_002279327.1| (e_value=1e-64) PREDICTED: 40S ribosomal protein S12 [Vitis vinifera];; (*SWP) sp|Q9XHS0|RS12_HORVU (e_value=3e-61) 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1;; (*TAIR) AT2G32060.2 (e_value=4e-55) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144;; (*ITAG) Solyc01g103800.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:84081046-84083324 transcript_region:SL2.40ch01:84081046..84083324- go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S12 (AHRD V1 ***- A9P9K3_POPTR); contains Interpro domain(s) IPR000530 Ribosomal protein S12e "; GO:0003735,GO:0003723 NbS00011032g0004.1 protein AED:0.27 eAED:0.33 QI:0|0|0|1|0.16|0|7|0|429; (*GB) gi|13492676|gb|AAK28304.1|AF346432_1 (e_value=7e-82) phenylpropanoid:glucosyltransferase 2, partial [Nicotiana tabacum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=3e-51) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=2e-40) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=4e-80) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00007157g0001.1 protein AED:0.47 eAED:0.47 QI:60|0|0.5|0.5|0|0|2|228|37 NbS00011040g0001.1 protein AED:0.00 eAED:0.03 QI:0|1|0.66|1|0|0|3|164|270; (*GB) gi|255578051|ref|XP_002529896.1| (e_value=1e-58) small nuclear ribonucleoprotein-associated protein, putative [Ricinus communis];; (*SWP) sp|Q9N1Q0|RSMB_MACEU (e_value=3e-35) Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1;; (*TAIR) AT5G44500.2 (e_value=1e-60) | Symbols: | Small nuclear ribonucleoprotein family protein | chr5:17927505-17928269 FORWARD LENGTH=254;; (*ITAG) Solyc01g094540.2.1 (e_value=9e-74) genomic_reference:SL2.40ch01 gene_region:77730818-77733865 transcript_region:SL2.40ch01:77730818..77733865- functional_description:"Small nuclear ribonucleoprotein-associated protein B (AHRD V1 *-*- B6T3Z9_MAIZE); contains Interpro domain(s) IPR017131 Small ribonucleoprotein associated, SmB/SmN "; NbS00011040g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.25|1|1|1|4|0|117; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=2e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=4e-50) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=3e-51) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc01g094560.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:77748472-77751106 transcript_region:SL2.40ch01:77748472..77751106- go_terms:GO:0003735 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735 NbS00012498g0202.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|1|2|394|245 NbS00015438g0006.1 protein AED:0.15 eAED:0.15 QI:86|0.9|0.90|1|0.8|0.81|11|0|711; (*GB) gi|225447456|ref|XP_002266728.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G04160.1 (e_value=0.0) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00015438g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.55|0.5|1|0.22|0.5|10|190|421; (*GB) gi|119224822|dbj|BAF41218.1| (e_value=9e-160) cytochrome P450 [Solanum lycopersicum];; (*SWP) sp|Q6F4F5|C724B_ORYSJ (e_value=9e-107) Cytochrome P450 724B1 OS=Oryza sativa subsp. japonica GN=CYP724B1 PE=1 SV=1;; (*TAIR) AT5G14400.1 (e_value=1e-79) | Symbols: CYP724A1 | cytochrome P450, family 724, subfamily A, polypeptide 1 | chr5:4644128-4646382 FORWARD LENGTH=367;; (*ITAG) Solyc07g056160.2.1 (e_value=2e-162) genomic_reference:SL2.40ch07 gene_region:61341580-61346006 transcript_region:SL2.40ch07:61341580..61346006+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00024976g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.25|1|0.33|0.25|4|95|124; (*GB) gi|225442949|ref|XP_002265443.1| (e_value=9e-73) PREDICTED: histidine-containing phosphotransfer protein 6 [Vitis vinifera];; (*SWP) sp|Q9SSC9|AHP6_ARATH (e_value=8e-57) Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2;; (*TAIR) AT1G80100.1 (e_value=6e-58) | Symbols: AHP6, HP6 | histidine phosphotransfer protein 6 | chr1:30133818-30134652 FORWARD LENGTH=154;; (*ITAG) Solyc03g116720.1.1 (e_value=5e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60060769-60061956 transcript_region:SL2.40ch03:60060769..60061956- go_terms:GO:0009927 functional_description:"Histidine phosphotransfer protein (AHRD V1 **** B9MWP3_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00045103g0004.1 protein AED:0.39 eAED:0.70 QI:96|0|0.5|1|0|0|2|0|76 NbS00045103g0003.1 protein AED:0.48 eAED:0.72 QI:0|0.2|0|1|0.2|0.33|6|0|117; (*GB) gi|255579647|ref|XP_002530664.1| (e_value=8e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17420.1 (e_value=7e-29) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr4:9722544-9724443 REVERSE LENGTH=285;; (*ITAG) Solyc08g007320.2.1 (e_value=2e-35) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00025868g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.4|0.33|0.66|1|1|6|0|470; (*GB) gi|225448032|ref|XP_002272181.1| (e_value=3e-70) PREDICTED: uncharacterized protein LOC100248076 [Vitis vinifera];; (*TAIR) AT1G10790.1 (e_value=2e-39) | Symbols: | BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3596360-3597847 FORWARD LENGTH=336;; (*ITAG) Solyc01g104240.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:84446877-84452363 transcript_region:SL2.40ch01:84446877..84452363+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *-*- Q5JLQ2_ORYSJ)"; NbS00025868g0009.1 protein AED:0.13 eAED:0.13 QI:396|1|1|1|0.5|0.44|9|436|151; (*GB) gi|225448034|ref|XP_002273377.1| (e_value=6e-55) PREDICTED: rhomboid protease gluP [Vitis vinifera];; (*TAIR) AT1G25290.2 (e_value=9e-51) | Symbols: RBL10 | RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=336;; (*ITAG) Solyc01g104250.2.1 (e_value=2e-79) genomic_reference:SL2.40ch01 gene_region:84452881-84457034 transcript_region:SL2.40ch01:84452881..84457034- go_terms:GO:0016021 functional_description:"Rhomboid-like protein (AHRD V1 ***- B6T5H4_MAIZE); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00025868g0008.1 protein AED:0.09 eAED:0.16 QI:141|0.25|0.2|0.8|1|1|5|0|436; (*GB) gi|225448028|ref|XP_002273123.1| (e_value=0.0) PREDICTED: F-box protein At1g10780 [Vitis vinifera];; (*SWP) sp|Q9SAC4|FB2_ARATH (e_value=1e-169) F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1;; (*TAIR) AT1G10780.1 (e_value=8e-171) | Symbols: | F-box/RNI-like superfamily protein | chr1:3592875-3594310 REVERSE LENGTH=418;; (*ITAG) Solyc01g104230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84436367-84437864 transcript_region:SL2.40ch01:84436367..84437864- functional_description:"F-box family protein (AHRD V1 ***- D7KLJ3_ARALY)"; NbS00003580g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|362; (*GB) gi|157093728|gb|ABV22590.1| (e_value=0.0) KDEL-tailed cysteine endopeptidase [Solanum lycopersicum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=2e-178) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=1e-169) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00003580g0008.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|91; (*GB) gi|37721208|gb|AAN31989.1| (e_value=3e-37) NADH dehydrogenase subunit B [Cartonema philydroides];; (*SWP) sp|Q589A5|NU2C_SILLA (e_value=4e-34) NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Silene latifolia GN=ndhB PE=3 SV=2;; (*ITAG) ATCG01250.1 (e_value=9e-34) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00006616g0001.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.16|1|1|6|0|95 NbS00029786g0014.1 protein AED:0.06 eAED:0.06 QI:440|1|1|1|1|1|3|297|179; (*GB) gi|225460947|ref|XP_002279766.1| (e_value=2e-75) PREDICTED: UPF0497 membrane protein 16 [Vitis vinifera];; (*SWP) sp|A7P0P3|CSPL3_VITVI (e_value=5e-77) CASP-like protein VIT_19s0090g00570 OS=Vitis vinifera GN=VIT_19s0090g00570 PE=2 SV=1;; (*TAIR) AT5G54980.1 (e_value=2e-55) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:22315799-22316560 FORWARD LENGTH=194;; (*ITAG) Solyc12g005070.1.1 (e_value=3e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30060-31527 transcript_region:SL2.40ch12:30060..31527- functional_description:"UPF0497 membrane protein 16 (AHRD V1 ***- U497G_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00029786g0002.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|387; (*GB) gi|338808382|gb|AEJ07893.1| (e_value=9e-116) putative coat protein [Pepper cryptic virus 2]; NbS00029786g0004.1 protein AED:0.20 eAED:0.20 QI:304|1|1|1|1|1|11|284|399; (*GB) gi|359494044|ref|XP_002279814.2| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LEJ9|B3GT4_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana GN=B3GALT4 PE=1 SV=1;; (*TAIR) AT4G26940.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr4:13529911-13532387 REVERSE LENGTH=407;; (*ITAG) Solyc07g064670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63938407-63943118 transcript_region:SL2.40ch07:63938407..63943118+ go_terms:GO:0008499 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0008499 NbS00029786g0001.1 protein AED:0.09 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|82623403|gb|ABB87116.1| (e_value=1e-26) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=3e-25) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=2e-26) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=2e-29) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00039976g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|0.75|1|1|4|0|335; (*GB) gi|4103324|gb|AAD01737.1| (e_value=0.0) GDP-mannose pyrophosphorylase [Solanum tuberosum];; (*SWP) sp|O22287|GMPP1_ARATH (e_value=0.0) Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1;; (*TAIR) AT2G39770.2 (e_value=0.0) | Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361;; (*ITAG) Solyc06g051270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30991736-30993659 transcript_region:SL2.40ch06:30991736..30993659+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 2"; GO:0004475,GO:0051015 NbS00009542g0007.1 protein AED:0.09 eAED:0.09 QI:297|0.85|0.87|1|0.85|0.75|8|219|537; (*GB) gi|292806707|gb|ADE42483.1| (e_value=6e-174) proton pump interactor 1 [Solanum tuberosum];; (*TAIR) AT4G27500.1 (e_value=1e-121) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc07g063100.2.1 (e_value=7e-175) genomic_reference:SL2.40ch07 gene_region:62894231-62898079 transcript_region:SL2.40ch07:62894231..62898079- functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00009542g0006.1 protein AED:0.41 eAED:0.41 QI:89|0.88|0.7|1|0.88|0.9|10|0|315; (*GB) gi|225461477|ref|XP_002282453.1| (e_value=2e-136) PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera];; (*SWP) sp|P71020|YLMH_BACSU (e_value=3e-16) Putative RNA-binding protein ylmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=4 SV=1;; (*TAIR) AT1G53120.1 (e_value=9e-137) | Symbols: | RNA-binding S4 domain-containing protein | chr1:19792798-19794605 FORWARD LENGTH=320;; (*ITAG) Solyc12g013870.1.1 (e_value=5e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4655976-4664119 transcript_region:SL2.40ch12:4655976..4664119+ go_terms:GO:0003723 functional_description:"RNA-binding S4 domain protein (AHRD V1 ***- B2IVN0_NOSP7); contains Interpro domain(s) IPR017506 Photosystem II S4 domain protein "; GO:0003723 NbS00002616g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|479; (*GB) gi|225432868|ref|XP_002283973.1| (e_value=2e-162) PREDICTED: CBL-interacting serine/threonine-protein kinase 7 [Vitis vinifera];; (*SWP) sp|Q9XIW0|CIPK7_ARATH (e_value=1e-149) CBL-interacting serine/threonine-protein kinase 7 OS=Arabidopsis thaliana GN=CIPK7 PE=1 SV=1;; (*TAIR) AT3G23000.1 (e_value=8e-151) | Symbols: CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | CBL-interacting protein kinase 7 | chr3:8172654-8173943 FORWARD LENGTH=429;; (*ITAG) Solyc09g083100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64180760-64182064 transcript_region:SL2.40ch09:64180760..64182064+ go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 20 (AHRD V1 **** C4P7W9_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00014257g0004.1 protein AED:0.20 eAED:0.20 QI:36|0.5|0.33|1|1|1|3|0|225; (*GB) gi|225441096|ref|XP_002263825.1| (e_value=9e-94) PREDICTED: dnaJ homolog subfamily C member 28 [Vitis vinifera];; (*SWP) sp|Q8VCE1|DJC28_MOUSE (e_value=1e-15) DnaJ homolog subfamily C member 28 OS=Mus musculus GN=Dnajc28 PE=2 SV=2;; (*TAIR) AT5G03560.1 (e_value=1e-86) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:900673-902719 REVERSE LENGTH=241;; (*ITAG) Solyc10g085820.1.1 (e_value=7e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64219338-64221096 transcript_region:SL2.40ch10:64219338..64221096- functional_description:"DnaJ-like subfamily C member 28 conserved domain protein (AHRD V1 **-- D7CKU0_SYNLT); contains Interpro domain(s) IPR018961 DnaJ homologue, subfamily C, member 28 "; NbS00007464g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.25|0|0.4|0.75|0.8|5|0|132; (*GB) gi|359489114|ref|XP_002264377.2| (e_value=1e-24) PREDICTED: LOW QUALITY PROTEIN: translation initiation factor eIF-2B subunit epsilon-like [Vitis vinifera];; (*TAIR) AT2G34970.1 (e_value=3e-22) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00007464g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.81|0.82|0.91|0.77|0.78|23|234|1237; (*GB) gi|225451181|ref|XP_002272927.1| (e_value=0.0) PREDICTED: protein HASTY 1 [Vitis vinifera];; (*SWP) sp|Q0WP44|HASTY_ARATH (e_value=0.0) Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1;; (*TAIR) AT3G05040.1 (e_value=0.0) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202;; (*ITAG) Solyc01g098170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80505430-80517080 transcript_region:SL2.40ch01:80505430..80517080+ go_terms:GO:0005487 functional_description:"Exportin 5 (Fragment) (AHRD V1 *--- Q5JTE8_HUMAN); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005487 NbS00045423g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|507; (*GB) gi|1345642|sp|P48418.1|C75A1_PETHY (e_value=0.0) RecName: Full=Flavonoid 3',5'-hydroxylase 1; Short=F3'5'H; AltName: Full=CYPLXXVA1; AltName: Full=Cytochrome P450 75A1;; (*SWP) sp|P48418|C75A1_PETHY (e_value=0.0) Flavonoid 3',5'-hydroxylase 1 OS=Petunia hybrida GN=CYP75A1 PE=2 SV=1;; (*TAIR) AT5G07990.1 (e_value=2e-174) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc11g066580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49421353-49424483 transcript_region:SL2.40ch11:49421353..49424483+ go_terms:GO:0008392 functional_description:"Cytochrome P450"; GO:0008392 NbS00045423g0008.1 protein AED:0.12 eAED:0.12 QI:230|1|1|1|1|1|18|223|829; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=0.0) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=0.0) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=0.0) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc11g066560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49403647-49415796 transcript_region:SL2.40ch11:49403647..49415796+ go_terms:GO:0016192,GO:0008270,GO:0005488 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 "; GO:0016192,GO:0008270,GO:0005488 NbS00022966g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|519; (*GB) gi|225424897|ref|XP_002269734.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253553 [Vitis vinifera];; (*TAIR) AT1G14430.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:4934359-4936053 FORWARD LENGTH=564;; (*ITAG) Solyc04g005780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:496613-498331 transcript_region:SL2.40ch04:496613..498331+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00022966g0008.1 protein AED:0.18 eAED:0.18 QI:518|1|0.8|1|0.25|0.2|5|0|584; (*GB) gi|224100445|ref|XP_002311879.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc04g005790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:500464-507053 transcript_region:SL2.40ch04:500464..507053- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00022966g0010.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|109 NbS00022966g0204.1 protein AED:0.09 eAED:0.09 QI:282|1|1|1|1|1|3|220|306 NbS00002022g0003.1 protein AED:0.57 eAED:0.61 QI:0|0|0|1|1|1|2|0|167; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-41) hypothetical protein [Nicotiana tabacum]; NbS00023697g0011.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|1|1|7|280|566; (*GB) gi|118483184|gb|ABK93496.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT5G50860.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:20693778-20696983 REVERSE LENGTH=580;; (*ITAG) Solyc03g097690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53463305-53469205 transcript_region:SL2.40ch03:53463305..53469205- go_terms:GO:0004693 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00023697g0014.1 protein AED:0.24 eAED:0.24 QI:180|0.92|0.85|1|0.76|0.78|14|0|340; (*GB) gi|296088722|emb|CBI38172.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q38799|ODPB_ARATH (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2;; (*TAIR) AT5G50850.1 (e_value=0.0) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc06g072580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41150708-41158205 transcript_region:SL2.40ch06:41150708..41158205- go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00043646g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|127; (*ITAG) Solyc04g053070.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00043646g0008.1 protein AED:0.28 eAED:0.30 QI:188|0.6|0.72|1|0.6|0.81|11|331|456; (*GB) gi|16518974|gb|AAL25088.1|AF426837_1 (e_value=0.0) Tobacco mosaic virus helicase domain-binding protein [Nicotiana tabacum];; (*SWP) sp|Q6AZT2|SPAST_XENLA (e_value=2e-62) Spastin OS=Xenopus laevis GN=spast PE=2 SV=1;; (*TAIR) AT2G45500.1 (e_value=4e-168) | Symbols: | AAA-type ATPase family protein | chr2:18749973-18752636 REVERSE LENGTH=491;; (*ITAG) Solyc01g094150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77458346-77468495 transcript_region:SL2.40ch01:77458346..77468495+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 6A (AHRD V1 *--- PRS6A_RAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00003846g0005.1 protein AED:0.21 eAED:0.21 QI:355|0.63|0.75|1|0.36|0.58|12|269|506; (*GB) gi|225455720|ref|XP_002267181.1| (e_value=0.0) PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera];; (*SWP) sp|Q54Y85|DPOE2_DICDI (e_value=4e-60) DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1;; (*TAIR) AT5G22110.1 (e_value=4e-180) | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon subunit B2 | chr5:7331071-7334178 REVERSE LENGTH=526;; (*ITAG) Solyc03g098250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54048982-54054503 transcript_region:SL2.40ch03:54048982..54054503+ go_terms:GO:0003887 functional_description:"DNA polymerase epsilon subunit 2 (AHRD V1 **** B6SKK3_MAIZE); contains Interpro domain(s) IPR016266 DNA polymerase epsilon, subunit B "; GO:0003887 NbS00003846g0006.1 protein AED:0.08 eAED:0.21 QI:0|0|0|1|0.5|0.33|3|0|245; (*GB) gi|224120416|ref|XP_002318324.1| (e_value=1e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=8e-39) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G17950.1 (e_value=2e-73) | Symbols: ATMYB52, BW52, MYB52 | myb domain protein 52 | chr1:6177764-6179063 FORWARD LENGTH=249;; (*ITAG) Solyc04g064540.2.1 (e_value=3e-65) genomic_reference:SL2.40ch04 gene_region:54812889-54815114 transcript_region:SL2.40ch04:54812889..54815114- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- B9I4W4_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00017511g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|255561080|ref|XP_002521552.1| (e_value=2e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G50900.1 (e_value=8e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18918122-18918466 FORWARD LENGTH=114;; (*ITAG) Solyc02g085010.1.1 (e_value=2e-46) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00017511g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|0|0|2|0|81 NbS00015078g0025.1 protein AED:0.02 eAED:0.02 QI:171|1|1|1|0.83|0.71|7|460|911; (*GB) gi|11561806|gb|AAC83688.2| (e_value=0.0) 101 kDa heat shock protein [Nicotiana tabacum];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=0.0) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT1G74310.1 (e_value=0.0) | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911;; (*ITAG) Solyc03g115230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59065016-59069171 transcript_region:SL2.40ch03:59065016..59069171- go_terms:GO:0019538,GO:0005524,GO:0017111 functional_description:"ClpB chaperone (AHRD V1 ***- D6QXI5_TRYCR); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111 NbS00015078g0028.1 protein AED:0.07 eAED:0.07 QI:122|1|1|1|0.92|0.92|14|373|644; (*GB) gi|359491637|ref|XP_002280859.2| (e_value=0.0) PREDICTED: histone deacetylase 5-like [Vitis vinifera];; (*SWP) sp|Q8RX28|HDA5_ARATH (e_value=0.0) Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1;; (*TAIR) AT5G61060.1 (e_value=0.0) | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5 | chr5:24567137-24570917 REVERSE LENGTH=660;; (*ITAG) Solyc03g115150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58987933-59002207 transcript_region:SL2.40ch03:58987933..59002207- go_terms:GO:0031078 functional_description:"Histone deacetylase (AHRD V1 **** B9H356_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0031078 NbS00015078g0026.1 protein AED:0.10 eAED:0.10 QI:153|1|1|1|1|1|3|139|108; (*GB) gi|356516859|ref|XP_003527110.1| (e_value=8e-48) PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3-like [Glycine max];; (*SWP) sp|Q9SD84|E13L3_ARATH (e_value=3e-39) Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1;; (*TAIR) AT1G18650.1 (e_value=5e-45) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc03g115200.2.1 (e_value=3e-56) genomic_reference:SL2.40ch03 gene_region:59049950-59054055 transcript_region:SL2.40ch03:59049950..59054055- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00015078g0033.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.28|0.85|1|1|7|0|477; (*GB) gi|255547207|ref|XP_002514661.1| (e_value=4e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G02890.1 (e_value=1e-16) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:640828-645303 FORWARD LENGTH=994;; (*ITAG) Solyc03g115160.2.1 (e_value=1e-162) genomic_reference:SL2.40ch03 gene_region:59007750-59010706 transcript_region:SL2.40ch03:59007750..59010706- functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q2QSD0_ORYSJ)"; NbS00015078g0030.1 protein AED:0.28 eAED:0.29 QI:240|0.69|0.71|1|0.69|0.64|14|408|710; (*GB) gi|359491648|ref|XP_002280975.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248444 [Vitis vinifera];; (*SWP) sp|Q6NYV9|LEO1_DANRE (e_value=4e-25) RNA polymerase-associated protein LEO1 OS=Danio rerio GN=leo1 PE=1 SV=1;; (*TAIR) AT5G61150.1 (e_value=1e-140) | Symbols: VIP4 | leo1-like family protein | chr5:24603846-24607528 REVERSE LENGTH=625;; (*ITAG) Solyc03g115240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59072661-59084808 transcript_region:SL2.40ch03:59072661..59084808- go_terms:GO:0005515 functional_description:"RNA polymerase-associated protein LEO1 (AHRD V1 *-*- C0HBJ3_SALSA); contains Interpro domain(s) IPR007149 Leo1-like protein "; GO:0005515 NbS00015078g0029.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|569; (*GB) gi|359481801|ref|XP_002278802.2| (e_value=3e-123) PREDICTED: dnaJ homolog subfamily C member 21-like [Vitis vinifera];; (*SWP) sp|Q6PGY5|DJC21_DANRE (e_value=9e-38) DnaJ homolog subfamily C member 21 OS=Danio rerio GN=dnajc21 PE=2 SV=1;; (*TAIR) AT1G74250.1 (e_value=2e-121) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:27920328-27922414 FORWARD LENGTH=630;; (*ITAG) Solyc03g115140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58985120-58987751 transcript_region:SL2.40ch03:58985120..58987751+ go_terms:GO:0008270,GO:0005622,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A8BQ93_GIALA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0008270,GO:0005622,GO:0031072 NbS00038167g0001.1 protein AED:0.19 eAED:0.21 QI:0|0.75|0.6|1|1|1|5|0|447; (*GB) gi|254762128|gb|ACT80136.1| (e_value=4e-156) transcription factor WRKY [Capsicum annuum];; (*SWP) sp|Q9C519|WRKY6_ARATH (e_value=4e-116) WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1;; (*TAIR) AT1G62300.1 (e_value=3e-117) | Symbols: WRKY6, ATWRKY6 | WRKY family transcription factor | chr1:23016887-23019155 REVERSE LENGTH=553;; (*ITAG) Solyc02g032950.2.1 (e_value=1e-157) genomic_reference:SL2.40ch02 gene_region:20198127-20200157 transcript_region:SL2.40ch02:20198127..20200157- go_terms:GO:0005515,GO:0010843 functional_description:"Transcription factor WRKY (AHRD V1 ***- C7E5X8_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00010031g0003.1 protein AED:0.11 eAED:0.11 QI:58|1|1|1|1|1|2|543|212; (*GB) gi|356557485|ref|XP_003547046.1| (e_value=1e-75) PREDICTED: LOB domain-containing protein 11-like [Glycine max];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=1e-60) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=8e-62) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc06g005090.2.1 (e_value=2e-77) genomic_reference:SL2.40ch06 gene_region:104026-105417 transcript_region:SL2.40ch06:104026..105417- go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00044337g0006.1 protein AED:0.21 eAED:0.21 QI:68|0.83|0.71|1|0.5|0.42|7|383|192; (*GB) gi|224138472|ref|XP_002326611.1| (e_value=4e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96AA3|RFT1_HUMAN (e_value=4e-13) Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1;; (*TAIR) AT5G07630.1 (e_value=4e-75) | Symbols: | lipid transporters | chr5:2410703-2414523 FORWARD LENGTH=611;; (*ITAG) Solyc05g051630.2.1 (e_value=2e-95) genomic_reference:SL2.40ch05 gene_region:61145683-61160111 transcript_region:SL2.40ch05:61145683..61160111+ go_terms:GO:0005515,GO:0034202 functional_description:"RFT1 family protein (AHRD V1 ***- D3BUS7_POLPA); contains Interpro domain(s) IPR007594 RFT1 "; GO:0005515,GO:0034202 NbS00000933g0001.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|1|1|3|0|83 NbS00018357g0005.1 protein AED:0.26 eAED:0.28 QI:49|0.94|0.88|0.94|0.82|0.88|18|0|712; (*GB) gi|210257071|dbj|BAG80663.1| (e_value=0.0) multifunctional protein [Nicotiana tabacum];; (*SWP) sp|Q8W1L6|MFP_ORYSJ (e_value=0.0) Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2;; (*TAIR) AT4G29010.1 (e_value=0.0) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc08g068390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54725090-54729981 transcript_region:SL2.40ch08:54725090..54729981+ go_terms:GO:0004300 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0004300 NbS00037790g0014.1 protein AED:0.15 eAED:0.17 QI:0|0.33|0.28|1|0.33|0.42|7|0|638; (*GB) gi|345843162|gb|AEO18237.1| (e_value=1e-162) Bti9 [Nicotiana benthamiana];; (*TAIR) AT3G21630.1 (e_value=8e-84) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc07g049180.2.1 (e_value=2e-156) genomic_reference:SL2.40ch07 gene_region:56760988-56770880 transcript_region:SL2.40ch07:56760988..56770880- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00037790g0010.1 protein AED:0.46 eAED:0.46 QI:0|1|0|1|0|0|2|0|61; (*GB) gi|359485630|ref|XP_002270948.2| (e_value=3e-17) PREDICTED: ribonuclease 3-like protein 3-like [Vitis vinifera];; (*TAIR) AT4G15417.1 (e_value=4e-14) | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:8821759-8822991 FORWARD LENGTH=264;; (*ITAG) Solyc07g049160.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:56743226-56748600 transcript_region:SL2.40ch07:56743226..56748600- go_terms:GO:0005515,GO:0004525 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 **** RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515,GO:0004525 NbS00037790g0009.1 protein AED:0.55 eAED:0.64 QI:0|0.4|0.16|0.83|1|0.83|6|0|237; (*GB) gi|345843162|gb|AEO18237.1| (e_value=1e-171) Bti9 [Nicotiana benthamiana];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=3e-56) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=1e-120) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc07g049180.2.1 (e_value=4e-168) genomic_reference:SL2.40ch07 gene_region:56760988-56770880 transcript_region:SL2.40ch07:56760988..56770880- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00055450g0005.1 protein AED:0.17 eAED:0.17 QI:471|0.4|0.66|1|1|1|6|135|368; (*GB) gi|147788047|emb|CAN78236.1| (e_value=2e-46) hypothetical protein VITISV_016390 [Vitis vinifera];; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=9e-11) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT1G61660.4 (e_value=5e-14) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:22754366-22756171 REVERSE LENGTH=371;; (*ITAG) Solyc10g006640.2.1 (e_value=2e-59) genomic_reference:SL2.40ch10 gene_region:1145988-1149662 transcript_region:SL2.40ch10:1145988..1149662- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00041400g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|80 NbS00003842g0005.1 protein AED:0.05 eAED:0.05 QI:172|0.85|0.87|1|0.57|0.75|8|158|547; (*GB) gi|225424754|ref|XP_002266408.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 22 [Vitis vinifera];; (*SWP) sp|Q6H601|RH22_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2;; (*TAIR) AT1G59990.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:22090369-22092885 REVERSE LENGTH=581;; (*ITAG) Solyc05g006130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:839061-843802 transcript_region:SL2.40ch05:839061..843802+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** D3BPQ9_POLPA); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00003842g0003.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|209954711|dbj|BAG80546.1| (e_value=4e-16) UDP-glucose:glucosyltransferase [Lycium barbarum]; NbS00006272g0026.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|0.66|0.5|4|0|188; (*GB) gi|224120404|ref|XP_002318321.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|D7LD59|CSPLL_ARALL (e_value=7e-15) CASP-like protein ARALYDRAFT_903204 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903204 PE=3 SV=1;; (*TAIR) AT2G39518.1 (e_value=1e-14) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16496029-16496937 REVERSE LENGTH=174;; (*ITAG) Solyc06g072350.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:41013416-41014787 transcript_region:SL2.40ch06:41013416..41014787+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00006272g0025.1 protein AED:0.05 eAED:0.16 QI:15|0.12|0|0.88|0.25|0.44|9|0|745; (*GB) gi|374095601|gb|AEY85028.1| (e_value=0.0) putative ATP-binding protein [Camellia sinensis];; (*TAIR) AT1G73460.1 (e_value=9e-113) | Symbols: | Protein kinase superfamily protein | chr1:27620122-27624899 FORWARD LENGTH=1169;; (*ITAG) Solyc06g072340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40997528-41008872 transcript_region:SL2.40ch06:40997528..41008872- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008152,GO:0006468 NbS00006272g0027.1 protein AED:0.21 eAED:0.21 QI:0|0.70|0.66|0.94|0.47|0.5|18|302|579; (*GB) gi|350538091|ref|NP_001234326.1| (e_value=0.0) putative 3,4-dihydroxy-2-butanone kinase [Solanum lycopersicum];; (*SWP) sp|O04059|DHBK_SOLLC (e_value=0.0) Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV=1;; (*TAIR) AT1G48430.1 (e_value=0.0) | Symbols: | Dihydroxyacetone kinase | chr1:17902874-17906689 REVERSE LENGTH=593;; (*ITAG) Solyc06g072380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41035937-41046448 transcript_region:SL2.40ch06:41035937..41046448- go_terms:GO:0004371 functional_description:"Dihydroxyacetone/glycerone kinase-like protein (AHRD V1 **** Q9LSH1_ARATH); contains Interpro domain(s) IPR012734 Dihydroxyacetone kinase "; GO:0004371 NbS00006272g0024.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|2|339|87; (*GB) gi|356527910|ref|XP_003532549.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100802148 [Glycine max];; (*TAIR) AT3G17750.1 (e_value=5e-34) | Symbols: | Protein kinase superfamily protein | chr3:6074228-6078428 FORWARD LENGTH=1138;; (*ITAG) Solyc06g072340.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:40997528-41008872 transcript_region:SL2.40ch06:40997528..41008872- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008152,GO:0006468 NbS00006272g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|319718183|gb|ADV59393.1| (e_value=4e-155) GAGA-binding transcriptional activator [Solanum lycopersicum];; (*SWP) sp|Q9LDE2|BPC2_ARATH (e_value=9e-79) Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1;; (*TAIR) AT1G14685.1 (e_value=7e-80) | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine 2 | chr1:5043086-5043925 FORWARD LENGTH=279;; (*ITAG) Solyc06g072370.2.1 (e_value=2e-139) genomic_reference:SL2.40ch06 gene_region:41033000-41034660 transcript_region:SL2.40ch06:41033000..41034660- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- Q2PQS1_ARATH); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00006272g0028.1 protein AED:0.27 eAED:0.55 QI:55|0.33|0.25|1|0|0|4|0|186; (*GB) gi|255640076|gb|ACU20329.1| (e_value=7e-41) unknown [Glycine max];; (*TAIR) AT2G01900.1 (e_value=4e-34) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc06g072400.1.1 (e_value=2e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41053768-41055791 transcript_region:SL2.40ch06:41053768..41055791- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 ***- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00006272g0029.1 protein AED:0.38 eAED:0.58 QI:0|0.5|0|1|0.5|0.33|3|0|103; (*GB) gi|357499271|ref|XP_003619924.1| (e_value=2e-27) Inositol 1 4 5-trisphosphate 5-phosphatase [Medicago truncatula];; (*SWP) sp|Q9FUR2|IP5P2_ARATH (e_value=2e-18) Type I inositol 1,4,5-trisphosphate 5-phosphatase 2 OS=Arabidopsis thaliana GN=IP5P2 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=4e-25) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc06g072390.2.1 (e_value=6e-46) genomic_reference:SL2.40ch06 gene_region:41052839-41053567 transcript_region:SL2.40ch06:41052839..41053567- functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 ***- Q6H453_ORYSJ); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00006272g0023.1 protein AED:0.10 eAED:0.21 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|224069344|ref|XP_002326335.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT2G35795.1 (e_value=6e-22) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:15042321-15043334 FORWARD LENGTH=112;; (*ITAG) Solyc06g072330.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:40995720-40997412 transcript_region:SL2.40ch06:40995720..40997412+ go_terms:GO:0001671 functional_description:"Mitochondrial import inner membrane translocase subunit TIM14 (AHRD V1 ***- B6T323_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0001671 NbS00010831g0013.1 protein AED:0.18 eAED:0.18 QI:90|0.75|0.8|1|0.75|0.6|5|271|453; (*GB) gi|211906466|gb|ACJ11726.1| (e_value=0.0) serine hydroxymethyltransferase [Gossypium hirsutum];; (*SWP) sp|Q54Z26|GLYC1_DICDI (e_value=0.0) Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1;; (*TAIR) AT4G13930.1 (e_value=0.0) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471;; (*ITAG) Solyc05g053810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62993932-62998448 transcript_region:SL2.40ch05:62993932..62998448- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** D2D306_GOSHI); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00010831g0007.1 protein AED:0.28 eAED:0.29 QI:32|0.86|0.91|0.95|0.81|0.86|23|0|1098; (*GB) gi|359477881|ref|XP_002266665.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50-like [Vitis vinifera];; (*SWP) sp|Q9SL02|RAD50_ARATH (e_value=0.0) DNA repair protein RAD50 OS=Arabidopsis thaliana GN=RAD50 PE=1 SV=2;; (*TAIR) AT2G31970.1 (e_value=0.0) | Symbols: RAD50, ATRAD50 | DNA repair-recombination protein (RAD50) | chr2:13600657-13608815 FORWARD LENGTH=1316;; (*ITAG) Solyc05g053800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62969281-62993468 transcript_region:SL2.40ch05:62969281..62993468+ go_terms:GO:0030674 functional_description:"DNA repair protein Rad50 (AHRD V1 ***- A8IE27_TRITU); contains Interpro domain(s) IPR004584 Recombination/repair protein Rad50 "; GO:0030674 NbS00011864g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|174; (*GB) gi|224133556|ref|XP_002327624.1| (e_value=5e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=7e-84) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.3 (e_value=2e-86) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16956681-16959875 REVERSE LENGTH=693;; (*ITAG) Solyc02g061850.2.1 (e_value=9e-108) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00011864g0008.1 protein AED:0.42 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|357483945|ref|XP_003612259.1| (e_value=1e-24) Phospholipase D delta isoform [Medicago truncatula];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=2e-24) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.1 (e_value=1e-25) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=868;; (*ITAG) Solyc02g061850.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00011864g0010.1 protein AED:0.08 eAED:0.08 QI:33|0.8|0.66|1|0.8|0.83|6|39|525; (*GB) gi|224108047|ref|XP_002314703.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43077|AMO_PEA (e_value=0.0) Primary amine oxidase OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT1G31710.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr1:11349855-11355339 FORWARD LENGTH=681;; (*ITAG) Solyc09g090490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65342343-65344890 transcript_region:SL2.40ch09:65342343..65344890- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9HV61_POPTR); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00039355g0001.1 protein AED:0.08 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|217075558|gb|ACJ86139.1| (e_value=2e-67) unknown [Medicago truncatula];; (*SWP) sp|Q38922|RAB1B_ARATH (e_value=9e-67) Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1;; (*TAIR) AT4G35860.1 (e_value=7e-68) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988839 REVERSE LENGTH=211;; (*ITAG) Solyc06g060210.1.1 (e_value=3e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00016947g0013.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|0.4|0.5|6|0|478; (*GB) gi|297744451|emb|CBI37713.3| (e_value=6e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SZL7|FRS9_ARATH (e_value=1e-110) Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2;; (*TAIR) AT4G38170.1 (e_value=1e-111) | Symbols: FRS9 | FAR1-related sequence 9 | chr4:17904613-17906439 FORWARD LENGTH=545;; (*ITAG) Solyc07g008700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3667866-3675747 transcript_region:SL2.40ch07:3667866..3675747+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 9 (AHRD V1 ***- FRS9_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00016947g0011.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|125; (*GB) gi|147772654|emb|CAN62850.1| (e_value=5e-26) hypothetical protein VITISV_010154 [Vitis vinifera];; (*ITAG) Solyc04g026140.1.1 (e_value=1e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:24676006-24676422 transcript_region:SL2.40ch04:24676006..24676422- functional_description:"Embryo-abundant protein (Fragment) (AHRD V1 **-- Q3I3Y8_PICGL)"; NbS00021306g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.5|0.83|0.8|0.83|6|0|479; (*GB) gi|348659061|gb|AEP82768.1| (e_value=0.0) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=0.0) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25830.1 (e_value=2e-136) | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600;; (*ITAG) Solyc02g079840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38831335-38833880 transcript_region:SL2.40ch02:38831335..38833880+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00021306g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|0|0|2|507|928; (*GB) gi|359496575|ref|XP_002271481.2| (e_value=2e-125) PREDICTED: uncharacterized protein LOC100263747 [Vitis vinifera];; (*TAIR) AT1G61690.1 (e_value=2e-66) | Symbols: | phosphoinositide binding | chr1:22782825-22786782 REVERSE LENGTH=1171;; (*ITAG) Solyc02g079850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38834430-38837925 transcript_region:SL2.40ch02:38834430..38837925- go_terms:GO:0008270 functional_description:"Pleckstrin homology domain-containing family F member 2 (AHRD V1 *--- PKHF2_DANRE); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0008270 NbS00021306g0012.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0|1|0.5|0.66|3|0|65; (*GB) gi|356527955|ref|XP_003532571.1| (e_value=3e-18) PREDICTED: uncharacterized protein LOC100815489 [Glycine max];; (*TAIR) AT1G61690.1 (e_value=1e-19) | Symbols: | phosphoinositide binding | chr1:22782825-22786782 REVERSE LENGTH=1171;; (*ITAG) Solyc00g183050.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:18367345-18367788 transcript_region:SL2.40ch00:18367345..18367788+ functional_description:"FYVE zinc finger containing protein (AHRD V1 **-- Q6ASX1_ORYSJ)"; NbS00021306g0013.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|62; (*GB) gi|297744882|emb|CBI38341.3| (e_value=5e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G61690.1 (e_value=1e-31) | Symbols: | phosphoinositide binding | chr1:22782825-22786782 REVERSE LENGTH=1171;; (*ITAG) Solyc02g079850.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:38834430-38837925 transcript_region:SL2.40ch02:38834430..38837925- go_terms:GO:0008270 functional_description:"Pleckstrin homology domain-containing family F member 2 (AHRD V1 *--- PKHF2_DANRE); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0008270 NbS00058428g0003.1 protein AED:0.08 eAED:0.11 QI:0|0.6|0.5|1|0.4|0.66|6|105|422; (*GB) gi|224105809|ref|XP_002313938.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G14530.1 (e_value=7e-174) | Symbols: TBL13 | TRICHOME BIREFRINGENCE-LIKE 13 | chr2:6187484-6190137 FORWARD LENGTH=412;; (*ITAG) Solyc01g106590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86172853-86178259 transcript_region:SL2.40ch01:86172853..86178259+ functional_description:"Leaf senescence protein-like (AHRD V1 **-- Q8H2I6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00000050g0004.1 protein AED:0.25 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|164 NbS00000050g0112.1 protein AED:0.32 eAED:0.62 QI:0|0|0.5|1|0|0.5|2|62|71 NbS00000050g0113.1 protein AED:0.30 eAED:0.30 QI:196|0.83|0.85|1|0.83|0.85|7|204|346 NbS00000050g0114.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|3|0|395 NbS00008146g0016.1 protein AED:0.09 eAED:0.09 QI:0|0.72|0.58|1|0.45|0.5|12|0|727; (*GB) gi|297735762|emb|CBI18449.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G16800.1 (e_value=8e-148) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:5745523-5755263 REVERSE LENGTH=2127;; (*ITAG) Solyc03g124000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64748459-64758766 transcript_region:SL2.40ch03:64748459..64758766+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008146g0001.1 protein AED:0.01 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|357436671|ref|XP_003588611.1| (e_value=2e-37) Auxin-induced protein 6B [Medicago truncatula];; (*TAIR) AT2G24400.1 (e_value=2e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr2:10377993-10378529 REVERSE LENGTH=178;; (*ITAG) Solyc03g124020.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64779168-64779734 transcript_region:SL2.40ch03:64779168..64779734+ go_terms:GO:0005516 functional_description:"SAUR family protein (AHRD V1 ***- B9HK23_POPTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00008146g0004.1 protein AED:0.16 eAED:0.20 QI:0|0.5|0.18|0.90|1|1|11|0|1586; (*GB) gi|255544500|ref|XP_002513311.1| (e_value=0.0) splicing endonuclease positive effector sen1, putative [Ricinus communis];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=1e-51) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT1G16800.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:5745523-5755263 REVERSE LENGTH=2127;; (*ITAG) Solyc03g124010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64763157-64776914 transcript_region:SL2.40ch03:64763157..64776914+ functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY)"; NbS00008146g0015.1 protein AED:0.25 eAED:0.26 QI:0|0.5|0.14|1|1|1|7|760|198; (*GB) gi|147821837|emb|CAN63743.1| (e_value=9e-100) hypothetical protein VITISV_041630 [Vitis vinifera];; (*TAIR) AT1G78915.1 (e_value=7e-88) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29667729-29671081 REVERSE LENGTH=385;; (*ITAG) Solyc03g124030.2.1 (e_value=2e-126) genomic_reference:SL2.40ch03 gene_region:64780565-64800802 transcript_region:SL2.40ch03:64780565..64800802- go_terms:GO:0005488 functional_description:"TPR repeat protein (AHRD V1 *--- A0ZBH5_NODSP); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00012862g0010.1 protein AED:0.41 eAED:0.42 QI:0|0.57|0.37|0.87|0.57|0.5|8|0|303; (*GB) gi|224123966|ref|XP_002319208.1| (e_value=2e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=3e-23) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G03610.1 (e_value=4e-108) | Symbols: | ELMO/CED-12 family protein | chr3:869479-871687 FORWARD LENGTH=323;; (*ITAG) Solyc10g081270.1.1 (e_value=3e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61716839-61720527 transcript_region:SL2.40ch10:61716839..61720527- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein 3 (AHRD V1 **-- B0WB15_CULQU); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00012862g0007.1 protein AED:0.27 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|105; (*GB) gi|147844669|emb|CAN80057.1| (e_value=1e-23) hypothetical protein VITISV_023146 [Vitis vinifera];; (*TAIR) AT1G14060.1 (e_value=2e-20) | Symbols: | GCK domain-containing protein | chr1:4817354-4817893 REVERSE LENGTH=179;; (*ITAG) Solyc05g013170.2.1 (e_value=7e-28) genomic_reference:SL2.40ch05 gene_region:6254353-6256562 transcript_region:SL2.40ch05:6254353..6256562- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012891 GCK "; NbS00012862g0016.1 protein AED:0.15 eAED:0.15 QI:4|0.6|0.66|1|0.8|0.66|6|234|418; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=0.0) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-64) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G17700.1 (e_value=1e-139) | Symbols: | MATE efflux family protein | chr5:5831025-5833415 REVERSE LENGTH=497;; (*ITAG) Solyc10g081260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00012862g0017.1 protein AED:0.31 eAED:0.31 QI:0|0.57|0.5|0.75|0.28|0.5|8|268|139; (*GB) gi|351727343|ref|NP_001238693.1| (e_value=3e-50) DNA polymerase delta catalytic subunit [Glycine max];; (*SWP) sp|O48901|DPOD1_SOYBN (e_value=8e-52) DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1;; (*TAIR) AT5G63960.1 (e_value=3e-51) | Symbols: | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095;; (*ITAG) Solyc10g081250.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61678761-61699648 transcript_region:SL2.40ch10:61678761..61699648+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 ***- C5Y6L0_SORBI); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003676,GO:0006260,GO:0006139 NbS00012862g0015.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.66|0.88|1|1|9|517|195; (*GB) gi|224057216|ref|XP_002299177.1| (e_value=5e-79) predicted protein [Populus trichocarpa];; (*SWP) sp|P0A958|ALKH_SHIFL (e_value=4e-13) KHG/KDPG aldolase OS=Shigella flexneri GN=eda PE=3 SV=1;; (*ITAG) Solyc10g081280.1.1 (e_value=6e-104) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:61721586-61725254 transcript_region:SL2.40ch10:61721586..61725254+ go_terms:GO:0008152 functional_description:"2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (AHRD V1 ***- D3EJ12_GEOS4); contains Interpro domain(s) IPR000887 KDPG and KHG aldolase "; GO:0008152 NbS00054038g0002.1 protein AED:0.07 eAED:0.37 QI:0|0|0.5|1|0|0|2|56|281; (*GB) gi|297738827|emb|CBI28072.3| (e_value=5e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19650.1 (e_value=6e-24) | Symbols: ATOFP8, OFP8 | ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221;; (*ITAG) Solyc04g080210.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62055156-62055956 transcript_region:SL2.40ch04:62055156..62055956- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SHS0_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00040887g0013.1 protein AED:0.05 eAED:0.05 QI:4|1|1|1|1|1|4|228|384; (*GB) gi|1064931|emb|CAA63541.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q3ECW2|CCA34_ARATH (e_value=6e-149) Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1;; (*TAIR) AT1G47230.1 (e_value=6e-152) | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306752-17308587 FORWARD LENGTH=369;; (*ITAG) Solyc04g078310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60660616-60662496 transcript_region:SL2.40ch04:60660616..60662496+ go_terms:GO:0005634 functional_description:"Cyclin A-like protein (AHRD V1 ***- Q40492_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00040887g0015.1 protein AED:0.12 eAED:0.14 QI:0|0.55|0.4|0.9|0.44|0.5|10|0|315; (*GB) gi|225458762|ref|XP_002285097.1| (e_value=4e-112) PREDICTED: MADS-box transcription factor 3 [Vitis vinifera];; (*SWP) sp|Q0D4T4|MAD18_ORYSJ (e_value=1e-27) MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1;; (*TAIR) AT1G22130.1 (e_value=5e-41) | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814259 REVERSE LENGTH=335;; (*ITAG) Solyc04g078300.2.1 (e_value=1e-180) genomic_reference:SL2.40ch04 gene_region:60651560-60654995 transcript_region:SL2.40ch04:60651560..60654995+ go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00040887g0014.1 protein AED:0.28 eAED:0.30 QI:0|0.78|0.66|1|0.85|0.86|15|0|622; (*GB) gi|356510521|ref|XP_003523986.1| (e_value=0.0) PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Glycine max];; (*SWP) sp|Q9BQ87|TBL1Y_HUMAN (e_value=6e-156) F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1;; (*TAIR) AT5G67320.1 (e_value=2e-174) | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613;; (*ITAG) Solyc04g078320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60664444-60675242 transcript_region:SL2.40ch04:60664444..60675242- go_terms:GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00008825g0001.1 protein AED:0.11 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|150; (*ITAG) Solyc09g072770.1.1 (e_value=3e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60943399-60944010 transcript_region:SL2.40ch09:60943399..60944010+ functional_description:"mRNA clone RAFL22-93-M12 (Fragment) (AHRD V1 *-*- Q67ZI7_ARATH)"; NbS00008825g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|92 NbS00008825g0024.1 protein AED:0.11 eAED:0.11 QI:514|0.83|0.71|1|0.33|0.42|7|55|561; (*GB) gi|147844780|emb|CAN79042.1| (e_value=0.0) hypothetical protein VITISV_043755 [Vitis vinifera];; (*SWP) sp|Q9M1K5|ZDH13_ARATH (e_value=6e-170) Probable S-acyltransferase At3g56930 OS=Arabidopsis thaliana GN=At3g56930 PE=2 SV=1;; (*TAIR) AT3G56930.1 (e_value=5e-171) | Symbols: | DHHC-type zinc finger family protein | chr3:21073805-21075873 FORWARD LENGTH=477;; (*ITAG) Solyc10g077050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59281500-59287466 transcript_region:SL2.40ch10:59281500..59287466- go_terms:GO:0008270 functional_description:"Palmitoyltransferase erf2 (AHRD V1 ***- C1GFP3_PARBD); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00008825g0027.1 protein AED:0.14 eAED:0.17 QI:0|0.8|0.5|1|0.8|0.83|6|0|414; (*GB) gi|255565372|ref|XP_002523677.1| (e_value=0.0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q6SJV8|CRD1_GOSHI (e_value=0.0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2;; (*TAIR) AT3G56940.1 (e_value=0.0) | Symbols: CRD1, CHL27, ACSF | dicarboxylate diiron protein, putative (Crd1) | chr3:21076594-21078269 FORWARD LENGTH=409;; (*ITAG) Solyc10g077040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59277929-59280410 transcript_region:SL2.40ch10:59277929..59280410- go_terms:GO:0003677,GO:0048529 functional_description:"Magnesium-protoporphyrin IX monomethyl ester (AHRD V1 **** B9SCF8_RICCO); contains Interpro domain(s) IPR008434 Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase "; GO:0003677,GO:0048529 NbS00008825g0029.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.83|0.83|0.2|0.16|6|224|421; (*GB) gi|356503336|ref|XP_003520466.1| (e_value=8e-169) PREDICTED: probable S-acyltransferase At5g05070-like [Glycine max];; (*SWP) sp|Q5PNZ1|ZDH21_ARATH (e_value=5e-151) Probable S-acyltransferase At5g05070 OS=Arabidopsis thaliana GN=At5g05070 PE=2 SV=1;; (*TAIR) AT5G05070.1 (e_value=4e-152) | Symbols: | DHHC-type zinc finger family protein | chr5:1496896-1498441 FORWARD LENGTH=413;; (*ITAG) Solyc10g077060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59293072-59295242 transcript_region:SL2.40ch10:59293072..59295242- go_terms:GO:0008270 functional_description:"Palmitoyltransferase akr1 (AHRD V1 *-*- AKR1_ASPOR); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00008825g0007.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|75249421|sp|Q93YF5.1|SUVH1_TOBAC (e_value=0.0) RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; AltName: Full=Histone H3-K9 methyltransferase 1; Short=H3-K9-HMTase 1; AltName: Full=NtSet1; AltName: Full=Suppressor of variegation 3-9 homolog protein 1; Short=Su(var)3-9 homolog protein 1;; (*SWP) sp|Q93YF5|SUVH1_TOBAC (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1;; (*TAIR) AT1G73100.1 (e_value=1e-145) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669;; (*ITAG) Solyc10g077070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59300620-59302764 transcript_region:SL2.40ch10:59300620..59302764- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00008825g0019.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|3|0|356; (*GB) gi|75249421|sp|Q93YF5.1|SUVH1_TOBAC (e_value=5e-114) RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; AltName: Full=Histone H3-K9 methyltransferase 1; Short=H3-K9-HMTase 1; AltName: Full=NtSet1; AltName: Full=Suppressor of variegation 3-9 homolog protein 1; Short=Su(var)3-9 homolog protein 1;; (*SWP) sp|Q93YF5|SUVH1_TOBAC (e_value=1e-115) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1;; (*TAIR) AT5G04940.2 (e_value=4e-41) | Symbols: SUVH1 | SU(VAR)3-9 homolog 1 | chr5:1454616-1456628 REVERSE LENGTH=670;; (*ITAG) Solyc10g077070.1.1 (e_value=8e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59300620-59302764 transcript_region:SL2.40ch10:59300620..59302764- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00008825g0022.1 protein AED:0.30 eAED:0.30 QI:172|0.87|1|1|0.87|0.77|9|182|227; (*GB) gi|14594925|emb|CAC43323.1| (e_value=2e-144) putative alpha7 proteasome subunit [Nicotiana tabacum];; (*SWP) sp|O24362|PSA3_SPIOL (e_value=1e-142) Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1;; (*TAIR) AT2G27020.1 (e_value=1e-142) | Symbols: PAG1 | 20S proteasome alpha subunit G1 | chr2:11528515-11530858 REVERSE LENGTH=249;; (*ITAG) Solyc10g077030.1.1 (e_value=9e-150) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59270503-59275704 transcript_region:SL2.40ch10:59270503..59275704- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q93X34_TOBAC); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00004613g0014.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|636; (*GB) gi|113205383|gb|AAU93590.2| (e_value=1e-131) Late blight resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=3e-129) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46710.1 (e_value=2e-53) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17206489-17209032 REVERSE LENGTH=847;; (*ITAG) Solyc04g007490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00004613g0015.1 protein AED:0.35 eAED:0.35 QI:248|0.75|0.6|1|0.75|0.6|5|512|262; (*GB) gi|330318656|gb|AEC10988.1| (e_value=4e-106) trafficking protein [Camellia sinensis];; (*SWP) sp|Q86SZ2|TPC6B_HUMAN (e_value=3e-36) Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1;; (*TAIR) AT3G05000.1 (e_value=1e-97) | Symbols: | Transport protein particle (TRAPP) component | chr3:1387444-1388697 REVERSE LENGTH=173;; (*ITAG) Solyc04g072410.2.1 (e_value=3e-123) genomic_reference:SL2.40ch04 gene_region:57020836-57025334 transcript_region:SL2.40ch04:57020836..57025334- go_terms:GO:0005515,GO:0005215 functional_description:"Trafficking protein particle complex subunit 6B (AHRD V1 ***- D0MS35_PHYIN); contains Interpro domain(s) IPR007194 Transport protein particle (TRAPP) component "; GO:0005515,GO:0005215 NbS00024618g0007.1 protein AED:0.36 eAED:0.36 QI:0|1|0.8|1|1|1|5|0|220; (*GB) gi|225462713|ref|XP_002267522.1| (e_value=6e-75) PREDICTED: uncharacterized protein LOC100260370 [Vitis vinifera];; (*TAIR) AT5G53330.1 (e_value=1e-60) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr5:21639236-21640716 FORWARD LENGTH=221;; (*ITAG) Solyc03g007520.2.1 (e_value=7e-113) genomic_reference:SL2.40ch03 gene_region:2089415-2095197 transcript_region:SL2.40ch03:2089415..2095197- functional_description:"Proline-rich cell wall protein-like (AHRD V1 ***- Q8LG11_ARATH); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00024618g0003.1 protein AED:0.57 eAED:0.60 QI:17|0|0|0.42|1|0.85|7|0|275; (*GB) gi|57013966|ref|YP_173438.1| (e_value=2e-40) hypothetical protein NitaMp100 [Nicotiana tabacum];; (*SWP) sp|Q94F27|B3GTB_ARATH (e_value=6e-28) Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1;; (*TAIR) AT5G53340.1 (e_value=4e-29) | Symbols: | Galactosyltransferase family protein | chr5:21641045-21643195 REVERSE LENGTH=338;; (*ITAG) Solyc08g081920.2.1 (e_value=2e-32) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00024618g0009.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0|4|0|259; (*GB) gi|255545082|ref|XP_002513602.1| (e_value=5e-50) protein dimerization, putative [Ricinus communis];; (*TAIR) AT1G79740.1 (e_value=1e-47) | Symbols: | hAT transposon superfamily | chr1:30004367-30006715 REVERSE LENGTH=651;; (*ITAG) Solyc03g007510.2.1 (e_value=2e-50) genomic_reference:SL2.40ch03 gene_region:2083331-2089256 transcript_region:SL2.40ch03:2083331..2089256+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00029476g0001.1 protein AED:0.35 eAED:0.39 QI:0|0.5|0.2|1|0|0|5|0|234; (*ITAG) Solyc10g049480.1.1 (e_value=9e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00029476g0002.1 protein AED:0.33 eAED:0.43 QI:0|0.2|0.33|1|0|0|6|0|193; (*GB) gi|2258469|gb|AAB71836.1| (e_value=3e-11) replication protein A1 [Oryza sativa Indica Group];; (*TAIR) AT5G08020.1 (e_value=2e-12) | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604;; (*ITAG) Solyc07g032800.1.1 (e_value=9e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00006018g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|84|248; (*GB) gi|113205234|gb|AAT39305.2| (e_value=2e-76) Dof domain, zinc finger family protein [Solanum demissum];; (*SWP) sp|Q8LE43|DOF21_ARATH (e_value=1e-40) Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2;; (*TAIR) AT2G28510.1 (e_value=9e-42) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr2:12199383-12200627 REVERSE LENGTH=288;; (*ITAG) Solyc06g075370.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:43174877-43176928 transcript_region:SL2.40ch06:43174877..43176928- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 9 (AHRD V1 *-*- A5HWF8_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00022973g0003.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0.33|1|0|0|3|0|79; (*ITAG) Solyc03g098660.2.1 (e_value=4e-33) genomic_reference:SL2.40ch03 gene_region:54407060-54408908 transcript_region:SL2.40ch03:54407060..54408908+ functional_description:"FIP1 (AHRD V1 **-- B6TFD3_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00060499g0005.1 protein AED:0.04 eAED:0.04 QI:247|1|1|1|0.88|0.8|10|197|381; (*GB) gi|225451130|ref|XP_002266266.1| (e_value=1e-90) PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera];; (*SWP) sp|B9DHD7|VAP22_ARATH (e_value=4e-68) Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1;; (*TAIR) AT1G08820.2 (e_value=3e-69) | Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386;; (*ITAG) Solyc01g067720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69048806-69053954 transcript_region:SL2.40ch01:69048806..69053954- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 *-*- Q1ANA7_WHEAT); contains Interpro domain(s) IPR000535 Major sperm protein "; GO:0005198 NbS00026658g0006.1 protein AED:0.26 eAED:0.26 QI:269|1|0.6|1|0.75|0.6|5|406|206; (*GB) gi|225438115|ref|XP_002278029.1| (e_value=8e-118) PREDICTED: mitochondrial inner membrane protease subunit 1-like [Vitis vinifera];; (*TAIR) AT2G31140.1 (e_value=5e-96) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr2:13270088-13271619 FORWARD LENGTH=205;; (*ITAG) Solyc09g025250.2.1 (e_value=1e-136) genomic_reference:SL2.40ch09 gene_region:19271334-19278850 transcript_region:SL2.40ch09:19271334..19278850+ functional_description:"Mitochondrial inner membrane protease subunit 2 (AHRD V1 *--- IMP2L_HUMAN); contains Interpro domain(s) IPR015927 Peptidase S24, S26A, S26B and S26C "; NbS00026658g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|224066243|ref|XP_002302043.1| (e_value=1e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L4E7|BP73_ORYSJ (e_value=5e-37) SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1;; (*TAIR) AT1G06190.2 (e_value=2e-25) | Symbols: | Rho termination factor | chr1:1892589-1894078 REVERSE LENGTH=292;; (*ITAG) Solyc09g025260.2.1 (e_value=1e-113) genomic_reference:SL2.40ch09 gene_region:19280157-19283283 transcript_region:SL2.40ch09:19280157..19283283+ go_terms:GO:0016020,GO:0006353 functional_description:"SAP-like protein BP-73 (AHRD V1 ***- B6SRI7_MAIZE); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020,GO:0006353 NbS00008842g0012.1 protein AED:0.00 eAED:0.00 QI:145|1|0.5|1|1|1|2|0|741; (*GB) gi|56555147|gb|AAV98199.1| (e_value=0.0) phenylalanine ammonialyase 1 [Petunia x hybrida];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=0.0) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00008842g0011.1 protein AED:0.44 eAED:0.51 QI:18|0.66|0.71|1|1|0.85|7|0|224; (*GB) gi|329025166|gb|AEB71566.1| (e_value=7e-127) chloroplast iron superoxide dismutase 3 [Solanum chacoense];; (*SWP) sp|P22302|SODF_NICPL (e_value=3e-63) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G23310.1 (e_value=9e-114) | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7850624-7852241 FORWARD LENGTH=263;; (*ITAG) Solyc02g021140.2.1 (e_value=1e-131) genomic_reference:SL2.40ch02 gene_region:12479343-12481654 transcript_region:SL2.40ch02:12479343..12481654- go_terms:GO:0008965,GO:0005507 functional_description:"Superoxide dismutase (AHRD V1 ***- B9S4J6_RICCO); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0008965,GO:0005507 NbS00008842g0007.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|83 NbS00021637g0006.1 protein AED:0.03 eAED:0.03 QI:72|1|0.8|1|1|1|5|0|380; (*GB) gi|255546301|ref|XP_002514210.1| (e_value=0.0) Pectinesterase PPE8B precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYZ3|PME53_ARATH (e_value=0.0) Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1;; (*TAIR) AT5G19730.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383;; (*ITAG) Solyc12g008530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1935700-1941362 transcript_region:SL2.40ch12:1935700..1941362- go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9RKG6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00014363g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|141; (*ITAG) Solyc02g093560.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48962535-48962960 transcript_region:SL2.40ch02:48962535..48962960+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013177 Protein of unknown function DUF1713, mitochondria "; NbS00051408g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.6|1|1|1|5|0|476; (*GB) gi|224139094|ref|XP_002326766.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94II3|PMTL_ARATH (e_value=0.0) Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1;; (*TAIR) AT4G19120.2 (e_value=0.0) | Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600;; (*ITAG) Solyc08g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:361626-365816 transcript_region:SL2.40ch08:361626..365816- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q5VRG9_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00027599g0002.1 protein AED:0.22 eAED:0.25 QI:0|0.5|0.33|0.66|1|1|3|0|111; (*GB) gi|350539233|ref|NP_001233870.1| (e_value=5e-46) deoxyuridine 5'-triphosphate nucleotidohydrolase [Solanum lycopersicum];; (*SWP) sp|P32518|DUT_SOLLC (e_value=1e-47) Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G46940.1 (e_value=1e-34) | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr3:17288367-17288867 REVERSE LENGTH=166;; (*ITAG) Solyc01g100030.2.1 (e_value=1e-48) genomic_reference:SL2.40ch01 gene_region:81869800-81871185 transcript_region:SL2.40ch01:81869800..81871185+ go_terms:GO:0046080 functional_description:"Deoxyuridine 5&apos-triphosphate nucleotidohydrolase (AHRD V1 ***- D0NVQ2_PHYIN); contains Interpro domain(s) IPR008181 DeoxyUTP pyrophosphatase subfamily 1 "; GO:0046080 NbS00027599g0011.1 protein AED:0.33 eAED:0.33 QI:362|0.81|0.83|1|0.63|0.58|12|208|379; (*GB) gi|356574971|ref|XP_003555616.1| (e_value=3e-174) PREDICTED: phospholipase D p1-like [Glycine max];; (*SWP) sp|Q9M9W8|PLDP2_ARATH (e_value=2e-161) Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2;; (*TAIR) AT3G05630.1 (e_value=1e-162) | Symbols: PLDP2, PDLZ2, PLDZETA2 | phospholipase D P2 | chr3:1635321-1640105 FORWARD LENGTH=1046;; (*ITAG) Solyc01g100020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00027599g0003.1 protein AED:0.27 eAED:0.27 QI:347|0.5|0.6|1|0.75|0.6|5|174|255; (*GB) gi|147768215|emb|CAN73616.1| (e_value=1e-86) hypothetical protein VITISV_004111 [Vitis vinifera];; (*SWP) sp|Q0WRB2|P2C73_ARATH (e_value=3e-67) Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1;; (*TAIR) AT5G27930.2 (e_value=2e-68) | Symbols: | Protein phosphatase 2C family protein | chr5:9958199-9960219 REVERSE LENGTH=373;; (*ITAG) Solyc01g100040.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:81872312-81875388 transcript_region:SL2.40ch01:81872312..81875388- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00020674g0009.1 protein AED:0.05 eAED:0.05 QI:96|1|1|1|1|1|3|315|263; (*GB) gi|219560132|gb|ACL27274.1| (e_value=8e-177) homeodomain leucine-zipper 1 [Nicotiana benthamiana];; (*SWP) sp|P46604|HAT22_ARATH (e_value=2e-84) Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1;; (*TAIR) AT4G37790.1 (e_value=1e-85) | Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278;; (*ITAG) Solyc02g091930.2.1 (e_value=1e-131) genomic_reference:SL2.40ch02 gene_region:47728213-47729684 transcript_region:SL2.40ch02:47728213..47729684- go_terms:GO:0030296 functional_description:"Homeobox-leucine zipper protein 22 (AHRD V1 ***- D7MA03_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0030296 NbS00021684g0005.1 protein AED:0.31 eAED:0.31 QI:98|1|0.5|1|0|0|2|0|92; (*GB) gi|297733646|emb|CBI14893.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G63190.2 (e_value=5e-14) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00021684g0003.1 protein AED:0.30 eAED:0.31 QI:0|0.4|0.16|0.83|1|1|6|0|584; (*GB) gi|225456800|ref|XP_002277813.1| (e_value=0.0) PREDICTED: programmed cell death protein 4 [Vitis vinifera];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=2e-33) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT5G63190.2 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00021684g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|255540415|ref|XP_002511272.1| (e_value=2e-120) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9JID1|PDCD4_RAT (e_value=4e-21) Programmed cell death protein 4 OS=Rattus norvegicus GN=Pdcd4 PE=1 SV=2;; (*TAIR) AT5G63190.2 (e_value=1e-110) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=1e-136) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00021684g0007.1 protein AED:0.17 eAED:0.19 QI:0|0.33|0.25|1|1|1|4|0|760; (*GB) gi|225456800|ref|XP_002277813.1| (e_value=0.0) PREDICTED: programmed cell death protein 4 [Vitis vinifera];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=9e-35) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT5G63190.2 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00021684g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|79 NbS00035242g0005.1 protein AED:0.01 eAED:0.01 QI:12|0|0.5|1|0|0.5|2|763|332; (*GB) gi|255542798|ref|XP_002512462.1| (e_value=1e-140) Pectinesterase PPE8B precursor, putative [Ricinus communis];; (*SWP) sp|Q9M9W7|PME22_ARATH (e_value=3e-110) Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1;; (*TAIR) AT3G05620.1 (e_value=2e-111) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=543;; (*ITAG) Solyc01g099960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81815430-81817654 transcript_region:SL2.40ch01:81815430..81817654- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RFE3_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00035242g0026.1 protein AED:0.08 eAED:0.08 QI:0|0.2|0|1|0.4|0.33|6|0|1014; (*GB) gi|359487645|ref|XP_002279164.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249393 [Vitis vinifera];; (*SWP) sp|Q3E8Z8|PME28_ARATH (e_value=0.0) Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1;; (*TAIR) AT5G27870.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:9878991-9881806 REVERSE LENGTH=732;; (*ITAG) Solyc01g099940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81806518-81809735 transcript_region:SL2.40ch01:81806518..81809735- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RFE0_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00035242g0018.1 protein AED:0.12 eAED:0.12 QI:163|0.66|0.6|0.9|1|1|10|0|797; (*GB) gi|224123024|ref|XP_002318975.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56230.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1399) | chr1:21046111-21048959 REVERSE LENGTH=752;; (*ITAG) Solyc01g099980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81827984-81833604 transcript_region:SL2.40ch01:81827984..81833604- functional_description:"Glycine-rich protein (AHRD V1 *--- D7M9Z2_ARALY); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00035242g0019.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.83|0.71|7|344|643; (*GB) gi|224123030|ref|XP_002318976.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=6e-112) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1;; (*TAIR) AT5G27920.1 (e_value=0.0) | Symbols: | F-box family protein | chr5:9942063-9944507 REVERSE LENGTH=642;; (*ITAG) Solyc01g099970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81818175-81824371 transcript_region:SL2.40ch01:81818175..81824371- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00035242g0024.1 protein AED:0.48 eAED:0.73 QI:0|0|0|1|0|0.5|2|0|63 NbS00011088g0005.1 protein AED:0.51 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|62 NbS00011088g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|133902320|gb|ABO41848.1| (e_value=2e-46) putative calcium-binding protein [Gossypium hirsutum];; (*SWP) sp|Q9LPK5|CML44_ARATH (e_value=7e-32) Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2;; (*TAIR) AT1G21550.1 (e_value=5e-33) | Symbols: | Calcium-binding EF-hand family protein | chr1:7553317-7553784 REVERSE LENGTH=155;; (*ITAG) Solyc04g058160.1.1 (e_value=4e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54401896-54402372 transcript_region:SL2.40ch04:54401896..54402372+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6SMJ0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011088g0011.1 protein AED:0.24 eAED:0.25 QI:0|0.66|0.42|0.85|1|1|7|0|622; (*GB) gi|359478639|ref|XP_002281079.2| (e_value=2e-162) PREDICTED: GTP-binding protein 5-like [Vitis vinifera];; (*SWP) sp|B7GIR2|OBG_ANOFW (e_value=8e-45) GTPase obg OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=obg PE=3 SV=1;; (*TAIR) AT1G07615.1 (e_value=1e-97) | Symbols: | GTP-binding protein Obg/CgtA | chr1:2342277-2344200 REVERSE LENGTH=493;; (*ITAG) Solyc04g058140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54386648-54390144 transcript_region:SL2.40ch04:54386648..54390144+ go_terms:GO:0005515,GO:0003924 functional_description:"GTPase obg (AHRD V1 *-** Q09CR7_STIAU); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0005515,GO:0003924 NbS00011088g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|176; (*ITAG) Solyc04g054840.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52449278-52450789 transcript_region:SL2.40ch04:52449278..52450789- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 *-** D5L144_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00011088g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|91 NbS00011088g0010.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0|2|0|59; (*GB) gi|356528487|ref|XP_003532834.1| (e_value=7e-21) PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein-like [Glycine max];; (*SWP) sp|O23116|EIL3_ARATH (e_value=3e-19) ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1;; (*TAIR) AT1G73730.1 (e_value=3e-20) | Symbols: EIL3, SLIM1, ATSLIM, AtEIL3 | ETHYLENE-INSENSITIVE3-like 3 | chr1:27730434-27732363 REVERSE LENGTH=567;; (*ITAG) Solyc04g054840.1.1 (e_value=8e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52449278-52450789 transcript_region:SL2.40ch04:52449278..52450789- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 *-** D5L144_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00016081g0014.1 protein AED:0.34 eAED:0.34 QI:66|1|0.33|1|0.5|0.66|3|0|248; (*GB) gi|225441313|ref|XP_002275793.1| (e_value=8e-134) PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Vitis vinifera];; (*SWP) sp|Q7JUR6|GDAP2_DROME (e_value=2e-12) Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1;; (*TAIR) AT3G10210.1 (e_value=2e-113) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:3160416-3161579 REVERSE LENGTH=237;; (*ITAG) Solyc04g040200.2.1 (e_value=6e-156) genomic_reference:SL2.40ch04 gene_region:31105832-31110158 transcript_region:SL2.40ch04:31105832..31110158+ functional_description:"Cellular retinaldehyde-binding/triple function C-terminal (AHRD V1 **-- Q2HW59_MEDTR); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00016081g0015.1 protein AED:0.32 eAED:0.32 QI:219|0.66|0.5|0.75|0.33|0.5|4|0|75; (*GB) gi|255581387|ref|XP_002531502.1| (e_value=3e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04080.1 (e_value=4e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:1104815-1105186 FORWARD LENGTH=63;; (*ITAG) Solyc10g084060.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63063618-63064246 transcript_region:SL2.40ch10:63063618..63064246- functional_description:"Unknown Protein (AHRD V1)"; NbC26253945g0001.1 protein AED:0.01 eAED:0.01 QI:68|0|0.5|1|0|1|2|2005|112; (*GB) gi|255583974|ref|XP_002532733.1| (e_value=1e-14) Glycosyltransferase QUASIMODO1, putative [Ricinus communis];; (*SWP) sp|Q9LSG3|GAUT8_ARATH (e_value=3e-14) Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1;; (*TAIR) AT3G25140.1 (e_value=3e-15) | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559;; (*ITAG) Solyc06g083310.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:45059759-45063492 transcript_region:SL2.40ch06:45059759..45063492- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00017324g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|4|0|649; (*GB) gi|209954733|dbj|BAG80557.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=4e-114) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G65550.1 (e_value=3e-53) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26198410-26199810 REVERSE LENGTH=466;; (*ITAG) Solyc05g005930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:711348-712688 transcript_region:SL2.40ch05:711348..712688- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 **-- B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00017495g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|0|2|0|107; (*GB) gi|359486478|ref|XP_002273648.2| (e_value=1e-54) PREDICTED: LOB domain-containing protein 12-like [Vitis vinifera];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=3e-55) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=2e-56) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc06g050950.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:30424092-30425351 transcript_region:SL2.40ch06:30424092..30425351- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 4 (AHRD V1 *-*- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00017495g0012.1 protein AED:0.10 eAED:0.10 QI:63|0.90|0.91|1|0.63|0.66|12|194|728; (*GB) gi|359486476|ref|XP_002273683.2| (e_value=0.0) PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Vitis vinifera];; (*SWP) sp|Q8BX80|ENASE_MOUSE (e_value=7e-101) Cytosolic endo-beta-N-acetylglucosaminidase OS=Mus musculus GN=Engase PE=2 SV=1;; (*TAIR) AT3G11040.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 85 | chr3:3460143-3463312 FORWARD LENGTH=701;; (*ITAG) Solyc06g050930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30372371-30381431 transcript_region:SL2.40ch06:30372371..30381431+ go_terms:GO:0005737 functional_description:"Endo beta n-acetylglucosaminidase (AHRD V1 *-*- Q16SQ0_AEDAE); contains Interpro domain(s) IPR005201 Glycoside hydrolase, family 85 "; GO:0005737 NbS00061098g0004.1 protein AED:0.26 eAED:0.26 QI:259|0.85|0.87|1|0.71|0.87|8|0|363; (*GB) gi|270267863|gb|ACZ65511.1| (e_value=0.0) Tap46 [Nicotiana benthamiana];; (*SWP) sp|Q8LDQ4|TAP46_ARATH (e_value=6e-145) PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2;; (*TAIR) AT5G53000.1 (e_value=5e-146) | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405;; (*ITAG) Solyc01g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:766543-772337 transcript_region:SL2.40ch01:766543..772337- go_terms:GO:0008601 functional_description:"PP2A regulatory subunit TAP46 (AHRD V1 **-- B6TVR5_MAIZE); contains Interpro domain(s) IPR007304 TAP42-like protein "; GO:0008601 NbS00015222g0016.1 protein AED:0.16 eAED:0.17 QI:30|0.86|0.86|1|0.95|0.86|23|533|1554; (*GB) gi|297739617|emb|CBI29799.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXS6|INO80_ARATH (e_value=0.0) DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2;; (*TAIR) AT3G57300.1 (e_value=0.0) | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1507;; (*ITAG) Solyc04g016370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00015222g0018.1 protein AED:0.30 eAED:0.30 QI:61|0.87|0.77|0.88|0.75|0.88|9|0|307; (*GB) gi|255577729|ref|XP_002529740.1| (e_value=2e-172) ribosome biogenesis protein brix, putative [Ricinus communis];; (*SWP) sp|Q8UVY2|BRX1_XENLA (e_value=1e-84) Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1;; (*TAIR) AT3G15460.1 (e_value=7e-166) | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:5214279-5216188 REVERSE LENGTH=315;; (*ITAG) Solyc04g016380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7185956-7190322 transcript_region:SL2.40ch04:7185956..7190322- go_terms:GO:0005515 functional_description:"Ribosome biogenesis protein BRX1 (AHRD V1 ***- B3LIY5_YEAS1); contains Interpro domain(s) IPR007109 Brix domain "; GO:0005515 NbS00015222g0017.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|1|7|362|284; (*GB) gi|211906482|gb|ACJ11734.1| (e_value=0.0) S-formylglutathione hydrolase [Gossypium hirsutum];; (*SWP) sp|Q8LAS8|SFGH_ARATH (e_value=4e-177) S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2;; (*TAIR) AT2G41530.1 (e_value=3e-178) | Symbols: ATSFGH, SFGH | S-formylglutathione hydrolase | chr2:17323656-17325430 REVERSE LENGTH=284;; (*ITAG) Solyc04g016360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7158486-7165657 transcript_region:SL2.40ch04:7158486..7165657+ go_terms:GO:0018738 functional_description:"S-formylglutathione hydrolase (AHRD V1 **** D2D314_GOSHI); contains Interpro domain(s) IPR014186 S-formylglutathione hydrolase "; GO:0018738 NbS00015538g0006.1 protein AED:0.65 eAED:0.45 QI:27|0|0.16|0.66|0.6|0.5|6|0|269; (*GB) gi|379987676|gb|AFD22618.1| (e_value=5e-102) dicer-like 1 protein, partial [Nicotiana attenuata];; (*SWP) sp|Q9SP32|DCL1_ARATH (e_value=1e-85) Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2;; (*TAIR) AT1G01040.2 (e_value=1e-86) | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1910;; (*ITAG) Solyc10g005130.2.1 (e_value=6e-97) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00049809g0003.1 protein AED:0.31 eAED:0.31 QI:49|1|0.5|1|1|1|2|0|253; (*GB) gi|344227185|gb|AEN03272.1| (e_value=1e-130) methionine sulfoxide reductase A4 [Solanum lycopersicum];; (*SWP) sp|Q9SEC2|MSRA_LACSA (e_value=5e-126) Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1;; (*TAIR) AT4G25130.1 (e_value=4e-115) | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898802-12899998 REVERSE LENGTH=258;; (*ITAG) Solyc03g093690.2.1 (e_value=3e-133) genomic_reference:SL2.40ch03 gene_region:48771078-48774007 transcript_region:SL2.40ch03:48771078..48774007+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D2B4D8_STRRD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00001962g0013.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|1|1|5|167|484; (*GB) gi|224117522|ref|XP_002317597.1| (e_value=4e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT3G20490.1 (e_value=1e-65) | Symbols: | unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). | chr3:7154178-7156382 REVERSE LENGTH=458;; (*ITAG) Solyc07g064570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63876824-63880942 transcript_region:SL2.40ch07:63876824..63880942+ functional_description:"Genomic DNA chromosome 3 TAC clone K10D20 (AHRD V1 ***- Q9LJU8_ARATH)"; NbS00001962g0014.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|211; (*GB) gi|147790169|emb|CAN70123.1| (e_value=2e-15) hypothetical protein VITISV_033217 [Vitis vinifera];; (*ITAG) Solyc04g071390.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00025049g0008.1 protein AED:0.14 eAED:0.14 QI:0|1|0.71|1|1|0.85|7|0|656; (*GB) gi|225424845|ref|XP_002268603.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 19 [Vitis vinifera];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc05g006680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1357171-1361457 transcript_region:SL2.40ch05:1357171..1361457+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00025049g0007.1 protein AED:0.09 eAED:0.12 QI:0|0.8|0.5|1|0.8|0.66|6|0|525; (*GB) gi|375300670|gb|AFA46812.1| (e_value=0.0) cell wall invertase [Manihot esculenta];; (*SWP) sp|Q67XZ3|INV3_ARATH (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme CWINV3 OS=Arabidopsis thaliana GN=CWINV3 PE=1 SV=2;; (*TAIR) AT1G55120.1 (e_value=0.0) | Symbols: ATFRUCT5, AtcwINV3, FRUCT5 | beta-fructofuranosidase 5 | chr1:20566617-20569165 FORWARD LENGTH=594;; (*ITAG) Solyc06g064620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36656911-36660263 transcript_region:SL2.40ch06:36656911..36660263- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00044884g0006.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0|0|3|0|752; (*GB) gi|356504837|ref|XP_003521201.1| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Glycine max];; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61028914-61031238 transcript_region:SL2.40ch10:61028914..61031238- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00044884g0003.1 protein AED:0.03 eAED:0.03 QI:509|1|0.5|1|0|0|2|0|795; (*GB) gi|356504837|ref|XP_003521201.1| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Glycine max];; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61028914-61031238 transcript_region:SL2.40ch10:61028914..61031238- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00024268g0010.1 protein AED:0.15 eAED:0.16 QI:232|0.94|0.95|1|0.68|0.8|20|0|1207; (*GB) gi|225424116|ref|XP_002280133.1| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera];; (*SWP) sp|Q8VHK9|DHX36_MOUSE (e_value=0.0) Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1;; (*TAIR) AT2G01130.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:88847-94635 REVERSE LENGTH=1113;; (*ITAG) Solyc04g007510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1184948-1200116 transcript_region:SL2.40ch04:1184948..1200116+ go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0005515 NbS00025643g0010.1 protein AED:0.21 eAED:0.23 QI:12|0.57|0.5|1|0.80|0.68|22|645|1532; (*GB) gi|359483223|ref|XP_002270538.2| (e_value=0.0) PREDICTED: histone acetyltransferase HAC1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C5X9|HAC1_ARATH (e_value=0.0) Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2;; (*TAIR) AT1G79000.1 (e_value=0.0) | Symbols: HAC1, PCAT2, ATHPCAT2, ATHAC1 | histone acetyltransferase of the CBP family 1 | chr1:29716933-29723984 REVERSE LENGTH=1697;; (*ITAG) Solyc01g008120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2245997-2262660 transcript_region:SL2.40ch01:2245997..2262660- go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00057997g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|141; (*GB) gi|225435474|ref|XP_002285497.1| (e_value=4e-31) PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform 1 [Vitis vinifera];; (*TAIR) AT3G63530.2 (e_value=8e-12) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc11g062260.1.1 (e_value=9e-77) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:46239133-46244631 transcript_region:SL2.40ch11:46239133..46244631- go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00027733g0004.1 protein AED:0.42 eAED:0.42 QI:0|0.25|0.4|0.6|0|0.4|5|74|157; (*GB) gi|296087401|emb|CBI33775.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXK2|SDN3_ARATH (e_value=1e-22) Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1;; (*TAIR) AT5G67240.1 (e_value=1e-23) | Symbols: SDN3 | small RNA degrading nuclease 3 | chr5:26824454-26828098 REVERSE LENGTH=782;; (*ITAG) Solyc10g084160.1.1 (e_value=2e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63151765-63156391 transcript_region:SL2.40ch10:63151765..63156391+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease (AHRD V1 *-*- C0S8V0_PARBP); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00002142g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|0|0|2|740|450; (*GB) gi|225458890|ref|XP_002285420.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 30 [Vitis vinifera];; (*SWP) sp|Q058P4|PUB30_ARATH (e_value=0.0) U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1;; (*TAIR) AT3G49810.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:18474936-18476282 REVERSE LENGTH=448;; (*ITAG) Solyc04g077610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60152942-60154785 transcript_region:SL2.40ch04:60152942..60154785- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LSY5_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00045507g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|356532481|ref|XP_003534801.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100808365 [Glycine max];; (*TAIR) AT2G39120.1 (e_value=2e-64) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:16321794-16322957 FORWARD LENGTH=387;; (*ITAG) Solyc10g079160.1.1 (e_value=3e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60090902-60092131 transcript_region:SL2.40ch10:60090902..60092131+ go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00049680g0010.1 protein AED:0.40 eAED:0.40 QI:0|0.25|0|0.4|0.75|1|5|0|248; (*GB) gi|225429271|ref|XP_002266390.1| (e_value=3e-29) PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Vitis vinifera];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=1e-27) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.1 (e_value=1e-28) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977727-5981899 REVERSE LENGTH=607;; (*ITAG) Solyc01g106080.2.1 (e_value=9e-31) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00001609g0011.1 protein AED:0.14 eAED:0.15 QI:369|0.83|0.68|1|0.83|0.68|19|0|2116; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*SWP) sp|Q6WKZ8|UBR2_MOUSE (e_value=1e-24) E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2;; (*TAIR) AT5G02310.1 (e_value=0.0) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc10g084760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63495399-63513748 transcript_region:SL2.40ch10:63495399..63513748- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00001609g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|276; (*GB) gi|18417168|ref|NP_567804.1| (e_value=5e-36) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G28310.1 (e_value=1e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14017458-14018066 FORWARD LENGTH=202;; (*ITAG) Solyc07g053950.1.1 (e_value=5e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:59673972-59674514 transcript_region:SL2.40ch07:59673972..59674514- functional_description:"Unknown Protein (AHRD V1)"; NbS00010633g0004.1 protein AED:0.02 eAED:0.02 QI:146|0.75|0.8|1|0.25|0.4|5|400|514; (*GB) gi|171854577|dbj|BAG16479.1| (e_value=0.0) glutamate decarboxylase isoform1 [Solanum lycopersicum];; (*SWP) sp|P54767|DCE_SOLLC (e_value=0.0) Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G17330.1 (e_value=0.0) | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502;; (*ITAG) Solyc03g098240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54043609-54048042 transcript_region:SL2.40ch03:54043609..54048042+ go_terms:GO:0004351,GO:0005516 functional_description:"Glutamate decarboxylase (AHRD V1 **** B6TV07_MAIZE); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0004351,GO:0005516 NbS00010633g0007.1 protein AED:0.38 eAED:0.38 QI:133|0.5|0.63|0.72|0.9|1|11|350|432; (*GB) gi|350538981|ref|NP_001234368.1| (e_value=0.0) D-cysteine desulfhydrase [Solanum lycopersicum];; (*SWP) sp|O57809|1A1D_PYRHO (e_value=9e-36) Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2;; (*TAIR) AT1G48420.1 (e_value=2e-108) | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulfhydrase | chr1:17896767-17898803 REVERSE LENGTH=401;; (*ITAG) Solyc03g098230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54032356-54043045 transcript_region:SL2.40ch03:54032356..54043045+ go_terms:GO:0019148,GO:0005515 functional_description:"Pyridoxal phosphate-dependent enzyme D-cysteine desulfhydrase family (AHRD V1 **** D0LXJ6_HALO1); contains Interpro domain(s) IPR005966 Pyridoxal phosphate-dependent deaminase "; GO:0019148,GO:0005515 NbS00031389g0003.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|315633204|gb|ADU54137.1| (e_value=4e-16) lateral organ boundaries domain 1 [Populus tremula x Populus alba];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=1e-14) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=1e-15) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc06g082770.2.1 (e_value=7e-54) genomic_reference:SL2.40ch06 gene_region:44749200-44750786 transcript_region:SL2.40ch06:44749200..44750786+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00031389g0005.1 protein AED:0.21 eAED:0.21 QI:280|1|0.5|1|1|1|2|0|306; (*GB) gi|255570871|ref|XP_002526387.1| (e_value=2e-123) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8NE86|MCU_HUMAN (e_value=2e-15) Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU PE=1 SV=1;; (*TAIR) AT1G57610.2 (e_value=6e-101) | Symbols: | Protein of unknown function (DUF607) | chr1:21337449-21338412 REVERSE LENGTH=293;; (*ITAG) Solyc06g082780.2.1 (e_value=9e-179) genomic_reference:SL2.40ch06 gene_region:44751145-44754834 transcript_region:SL2.40ch06:44751145..44754834- functional_description:"Coiled-coil domain containing 109B (AHRD V1 *--- Q3ZBZ7_BOVIN); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00031007g0004.1 protein AED:0.01 eAED:0.06 QI:53|1|0|1|0|0.5|2|0|358; (*GB) gi|225452805|ref|XP_002283468.1| (e_value=4e-149) PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=2e-25) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT5G15240.1 (e_value=1e-132) | Symbols: | Transmembrane amino acid transporter family protein | chr5:4947762-4950211 FORWARD LENGTH=423;; (*ITAG) Solyc03g013160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00024043g0004.1 protein AED:0.00 eAED:0.00 QI:118|1|1|1|0.5|1|3|109|124; (*GB) gi|356533895|ref|XP_003535493.1| (e_value=6e-17) PREDICTED: myotubularin-related protein 2-like [Glycine max];; (*TAIR) AT3G10550.1 (e_value=6e-15) | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases II superfamily | chr3:3293210-3298452 REVERSE LENGTH=840;; (*ITAG) Solyc11g007670.1.1 (e_value=1e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00006353g0005.1 protein AED:0.18 eAED:0.18 QI:67|1|1|1|0.53|0.71|14|381|528; (*GB) gi|356527443|ref|XP_003532320.1| (e_value=0.0) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*SWP) sp|Q5F383|SPP2B_CHICK (e_value=1e-57) Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1;; (*TAIR) AT1G05820.1 (e_value=0.0) | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDASE-LIKE 5 | chr1:1749776-1753767 FORWARD LENGTH=536;; (*ITAG) Solyc12g098670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64437938-64445800 transcript_region:SL2.40ch12:64437938..64445800+ go_terms:GO:0016021 functional_description:"Signal peptide peptidase (AHRD V1 ***- Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00003537g0019.1 protein AED:0.09 eAED:0.10 QI:0|0.72|0.5|1|0.63|0.66|12|0|751; (*GB) gi|134048908|dbj|BAF49520.1| (e_value=0.0) N-methylputrescine oxidase [Nicotiana tabacum];; (*SWP) sp|Q07123|AMO2_ARTS1 (e_value=5e-147) Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc08g014330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4055000-4062570 transcript_region:SL2.40ch08:4055000..4062570+ go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00003537g0017.1 protein AED:0.08 eAED:0.13 QI:87|0.6|0.45|0.81|0.7|0.81|11|0|923; (*GB) gi|297733723|emb|CBI14970.3| (e_value=5e-149) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=6e-142) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1;; (*TAIR) AT5G63110.1 (e_value=4e-143) | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471;; (*ITAG) Solyc06g071680.2.1 (e_value=3e-155) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00003537g0012.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|1|1|1|2|221|178; (*GB) gi|225456920|ref|XP_002278063.1| (e_value=1e-49) PREDICTED: transcription factor MYB39 [Vitis vinifera];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=5e-17) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT5G26660.1 (e_value=4e-18) | Symbols: ATMYB86, MYB86 | myb domain protein 86 | chr5:9331775-9333044 REVERSE LENGTH=352;; (*ITAG) Solyc06g071690.2.1 (e_value=4e-63) genomic_reference:SL2.40ch06 gene_region:40550761-40552362 transcript_region:SL2.40ch06:40550761..40552362+ go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 *--* D6BV29_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00039095g0003.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|1|1|1|5|0|287; (*GB) gi|297737831|emb|CBI27032.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|O66119|ODP2_ZYMMO (e_value=2e-20) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2;; (*TAIR) AT3G25860.1 (e_value=4e-63) | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480;; (*ITAG) Solyc05g009530.2.1 (e_value=1e-63) genomic_reference:SL2.40ch05 gene_region:3737122-3743261 transcript_region:SL2.40ch05:3737122..3743261- go_terms:GO:0004742 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0004742 NbS00056659g0002.1 protein AED:0.17 eAED:0.20 QI:0|0|0|1|1|1|3|0|643; (*GB) gi|255577118|ref|XP_002529443.1| (e_value=8e-143) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9Y222|DMTF1_HUMAN (e_value=2e-16) Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens GN=DMTF1 PE=1 SV=1;; (*TAIR) AT5G41020.1 (e_value=7e-124) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc08g066190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51801603-51803075 transcript_region:SL2.40ch08:51801603..51803075- go_terms:GO:0003677 functional_description:"Cyclin-D-binding Myb-like transcription factor 1 (AHRD V1 *-*- DMTF1_HUMAN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00056659g0001.1 protein AED:0.28 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|297744471|emb|CBI37733.3| (e_value=7e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=2e-39) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=2e-40) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=8e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00012547g0001.1 protein AED:0.27 eAED:0.30 QI:0|0.66|0.53|1|1|1|13|0|1322; (*GB) gi|225444523|ref|XP_002268966.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247051 [Vitis vinifera];; (*TAIR) AT1G64570.1 (e_value=2e-117) | Symbols: DUO3 | Homeodomain-like superfamily protein | chr1:23978868-23983925 FORWARD LENGTH=1239;; (*ITAG) Solyc06g072270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40940777-40951100 transcript_region:SL2.40ch06:40940777..40951100- go_terms:GO:0008270 functional_description:"RING finger protein 24 (AHRD V1 *--- RNF24_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00050380g0012.1 protein AED:0.13 eAED:0.13 QI:242|1|1|1|1|1|7|171|279; (*GB) gi|13161912|emb|CAC33003.1| (e_value=2e-177) urease accessory protein G [Solanum tuberosum];; (*SWP) sp|Q96WV0|UREG_SCHPO (e_value=4e-101) Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB16A4.05c PE=2 SV=1;; (*TAIR) AT2G34470.1 (e_value=7e-170) | Symbols: UREG, PSKF109 | urease accessory protein G | chr2:14530900-14532411 REVERSE LENGTH=275;; (*ITAG) Solyc02g070670.2.1 (e_value=5e-179) genomic_reference:SL2.40ch02 gene_region:34922481-34926257 transcript_region:SL2.40ch02:34922481..34926257+ go_terms:GO:0046872,GO:0000166 functional_description:"Urease accessory protein UREG (AHRD V1 ***- Q9SYT8_ARATH); contains Interpro domain(s) IPR004400 Urease accessory protein UreG "; GO:0046872,GO:0000166 NbS00050380g0005.1 protein AED:0.24 eAED:0.24 QI:144|1|1|1|0.66|0.5|4|505|260; (*GB) gi|255557341|ref|XP_002519701.1| (e_value=9e-106) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18260.1 (e_value=6e-92) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr4:10093524-10097337 REVERSE LENGTH=545;; (*ITAG) Solyc02g070680.2.1 (e_value=2e-120) genomic_reference:SL2.40ch02 gene_region:34928632-34931014 transcript_region:SL2.40ch02:34928632..34931014+ functional_description:"Chromosome 3 open reading frame 19 ortholog (AHRD V1 *-*- Q0P5K9_BOVIN)"; NbS00050380g0017.1 protein AED:0.23 eAED:0.35 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|255557343|ref|XP_002519702.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g070690.1.1 (e_value=1e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:34932679-34933278 transcript_region:SL2.40ch02:34932679..34933278+ functional_description:"C2 domain-containing protein (AHRD V1 ***- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00014727g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|241; (*GB) gi|350538977|ref|NP_001233856.1| (e_value=1e-134) yfe37 protein [Solanum lycopersicum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=2e-70) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=9e-103) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc01g091660.2.1 (e_value=1e-146) genomic_reference:SL2.40ch01 gene_region:77016320-77017458 transcript_region:SL2.40ch01:77016320..77017458- go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4X9_ZEAMM); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00036153g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|514; (*GB) gi|225450265|ref|XP_002269745.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242579 [Vitis vinifera];; (*TAIR) AT2G44230.1 (e_value=2e-180) | Symbols: | Plant protein of unknown function (DUF946) | chr2:18286537-18288247 FORWARD LENGTH=542;; (*ITAG) Solyc01g081620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73325183-73327400 transcript_region:SL2.40ch01:73325183..73327400+ functional_description:"Vacuolar sorting protein (AHRD V1 *--- C6HJD3_AJECH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbC25227573g0001.1 protein AED:0.00 eAED:0.09 QI:0|1|0.5|1|0|0|2|0|112; (*ITAG) Solyc03g062910.2.1 (e_value=3e-36) genomic_reference:SL2.40ch03 gene_region:29845433-29859257 transcript_region:SL2.40ch03:29845433..29859257+ go_terms:GO:0008409 functional_description:"5&apos-3&apos exonuclease N-terminal resolvase-like domain containing protein expressed (AHRD V1 *--- Q10PN8_ORYSJ); contains Interpro domain(s) IPR020046 5'-3' exonuclease, N-terminal resolvase-like domain "; GO:0008409 NbS00039104g0005.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0.5|2|0|111; (*GB) gi|71041100|gb|AAZ20438.1| (e_value=2e-45) MYB22 [Malus x domestica];; (*SWP) sp|O22264|MYB12_ARATH (e_value=3e-43) Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=7e-46) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc09g090130.2.1 (e_value=7e-44) genomic_reference:SL2.40ch09 gene_region:65023341-65025440 transcript_region:SL2.40ch09:65023341..65025440+ go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **** A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00039104g0002.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|1|1|2|0|94; (*GB) gi|11465960|ref|NP_054502.1| (e_value=9e-48) NADH dehydrogenase subunit J [Nicotiana tabacum];; (*SWP) sp|P12201|NDHJ_TOBAC (e_value=3e-49) NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tabacum GN=ndhJ PE=3 SV=1;; (*ITAG) ATCG00420.1 (e_value=6e-43) | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=158;; (*ITAG) Solyc01g007290.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1845511-1845987 transcript_region:SL2.40ch01:1845511..1845987- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit J (AHRD V1 ***- NDHJ_TRIEI); contains Interpro domain(s) IPR020396 NADH:ubiquinone oxidoreductase, 30 kDa subunit, conserved site IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00039104g0004.1 protein AED:0.64 eAED:0.68 QI:0|0|0|0.5|0|0|2|0|158; (*TAIR) AT5G49330.1 (e_value=2e-11) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc06g009710.2.1 (e_value=6e-12) genomic_reference:SL2.40ch06 gene_region:3687447-3689516 transcript_region:SL2.40ch06:3687447..3689516+ go_terms:GO:0005515,GO:0003700 functional_description:"Myb 12 transcription factor (AHRD V1 *-** D2EBC3_9SOLN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00050801g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.25|0.6|5|273|234; (*GB) gi|359497194|ref|XP_003635450.1| (e_value=4e-47) PREDICTED: uncharacterized protein LOC100853798 [Vitis vinifera];; (*TAIR) AT4G39900.1 (e_value=3e-29) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18508569-18510289 REVERSE LENGTH=245;; (*ITAG) Solyc04g055250.2.1 (e_value=2e-98) genomic_reference:SL2.40ch04 gene_region:53024745-53031415 transcript_region:SL2.40ch04:53024745..53031415- functional_description:"Unknown Protein (AHRD V1)"; NbS00022925g0003.1 protein AED:0.22 eAED:0.22 QI:348|1|1|1|1|1|2|42|138; (*GB) gi|224069060|ref|XP_002302890.1| (e_value=1e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43060.1 (e_value=9e-14) | Symbols: IBH1 | ILI1 binding bHLH 1 | chr2:17909247-17909717 FORWARD LENGTH=156;; (*ITAG) Solyc12g042010.1.1 (e_value=4e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:41564606-41564989 transcript_region:SL2.40ch12:41564606..41564989+ go_terms:GO:0005634,GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00058091g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|690; (*GB) gi|297742922|emb|CBI35789.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LSK8|PP240_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana GN=At3g18020 PE=2 SV=1;; (*TAIR) AT3G18020.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:6165449-6167515 FORWARD LENGTH=688;; (*ITAG) Solyc03g118790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61665749-61668104 transcript_region:SL2.40ch03:61665749..61668104+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Y6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058091g0006.1 protein AED:0.15 eAED:0.15 QI:71|1|0.66|1|1|1|3|0|242; (*GB) gi|359491024|ref|XP_003634206.1| (e_value=2e-140) PREDICTED: thaumatin-like protein-like [Vitis vinifera];; (*SWP) sp|P50699|TLPH_ARATH (e_value=6e-121) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT1G73620.1 (e_value=2e-124) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:27681432-27682954 FORWARD LENGTH=264;; (*ITAG) Solyc03g118780.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:61662722-61664087 transcript_region:SL2.40ch03:61662722..61664087+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- A8IXE7_BRACM); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00029085g0022.1 protein AED:0.21 eAED:0.21 QI:0|1|0.62|1|0.85|0.75|8|0|383; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=0.0) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=0.0) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.2 (e_value=0.0) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc03g116810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00029085g0028.1 protein AED:0.05 eAED:0.05 QI:164|0.75|0.66|1|0.75|0.55|9|3017|705; (*GB) gi|255543327|ref|XP_002512726.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q9FXH6|CNGC8_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2;; (*TAIR) AT1G19780.1 (e_value=0.0) | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated channel 8 | chr1:6833885-6836578 REVERSE LENGTH=753;; (*ITAG) Solyc03g116850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60162079-60167174 transcript_region:SL2.40ch03:60162079..60167174- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00029085g0019.1 protein AED:0.09 eAED:0.09 QI:82|1|1|1|1|1|2|238|139; (*GB) gi|297743481|emb|CBI36348.3| (e_value=5e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G15900.1 (e_value=6e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5376356-5376972 REVERSE LENGTH=141;; (*ITAG) Solyc03g116800.2.1 (e_value=9e-51) genomic_reference:SL2.40ch03 gene_region:60125950-60126725 transcript_region:SL2.40ch03:60125950..60126725- functional_description:"Unknown Protein (AHRD V1)"; NbS00029085g0027.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.45|1|0.7|0.63|11|0|713; (*GB) gi|297743483|emb|CBI36350.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G15920.1 (e_value=3e-150) | Symbols: | Phox (PX) domain-containing protein | chr3:5383768-5386955 REVERSE LENGTH=755;; (*ITAG) Solyc03g116830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60150561-60153480 transcript_region:SL2.40ch03:60150561..60153480- go_terms:GO:0007154 functional_description:"Phox domain-containing protein (AHRD V1 ***- D7L4Y9_ARALY); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00012896g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0|1|0|0.25|4|0|733; (*GB) gi|73745650|gb|AAZ81985.1| (e_value=0.0) ethylene receptor [Petunia x hybrida];; (*SWP) sp|Q0WPQ2|ETR2_ARATH (e_value=0.0) Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2;; (*TAIR) AT3G23150.1 (e_value=0.0) | Symbols: ETR2 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:8255156-8257560 FORWARD LENGTH=773;; (*ITAG) Solyc06g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33043757-33047094 transcript_region:SL2.40ch06:33043757..33047094- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** Q9XET8_SOLLC); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0004872,GO:0051740,GO:0004696 NbS00012896g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|123; (*ITAG) Solyc12g044470.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44889904-44890771 transcript_region:SL2.40ch12:44889904..44890771+ go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00012896g0010.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.6|0|0.2|5|0|386; (*ITAG) Solyc01g059760.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00012896g0007.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|0|0|2|0|99 NbS00058759g0005.1 protein AED:0.07 eAED:0.09 QI:265|0|0.66|1|0|0.33|3|367|229; (*GB) gi|255545120|ref|XP_002513621.1| (e_value=2e-75) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q84JK8|MAKR6_ARATH (e_value=3e-36) Probable membrane-associated kinase regulator 6 OS=Arabidopsis thaliana GN=MAKR6 PE=2 SV=1;; (*TAIR) AT5G52900.1 (e_value=2e-37) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21452893-21453692 REVERSE LENGTH=235;; (*ITAG) Solyc06g036460.2.1 (e_value=7e-16) genomic_reference:SL2.40ch06 gene_region:22712512-22713538 transcript_region:SL2.40ch06:22712512..22713538- functional_description:"Genomic DNA chromosome 5 P1 clone MXC20 (AHRD V1 ***- Q9FLX1_ARATH)"; NbS00033352g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|4|0|142; (*GB) gi|356509346|ref|XP_003523411.1| (e_value=1e-43) PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial-like [Glycine max];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=2e-22) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT5G09300.2 (e_value=2e-39) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886291 REVERSE LENGTH=401;; (*ITAG) Solyc06g059850.1.1 (e_value=3e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34132230-34134435 transcript_region:SL2.40ch06:34132230..34134435- go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbS00003721g0001.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|2|0|1370; (*GB) gi|225455406|ref|XP_002273978.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G07280.1 (e_value=0.0) | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192;; (*ITAG) Solyc03g026040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7819600-7823670 transcript_region:SL2.40ch03:7819600..7823670- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007800g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.83|1|1|1|6|0|420; (*GB) gi|296083173|emb|CBI22809.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01360.1 (e_value=0.0) | Symbols: TBL3 | Plant protein of unknown function (DUF828) | chr5:147608-149316 REVERSE LENGTH=434;; (*ITAG) Solyc09g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:435347-437282 transcript_region:SL2.40ch09:435347..437282+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00007800g0020.1 protein AED:0.21 eAED:0.22 QI:0|1|0|1|1|1|2|0|388; (*GB) gi|629669|pir||S39507 (e_value=0.0) glucuronosyl transferase homolog, ripening-related - tomato (fragment);; (*SWP) sp|Q9SNB1|U7E11_ARATH (e_value=9e-109) UDP-glycosyltransferase 76E11 OS=Arabidopsis thaliana GN=UGT76E11 PE=2 SV=1;; (*TAIR) AT3G46670.1 (e_value=7e-110) | Symbols: UGT76E11 | UDP-glucosyl transferase 76E11 | chr3:17192795-17194227 REVERSE LENGTH=451;; (*ITAG) Solyc10g085230.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63824666-63826235 transcript_region:SL2.40ch10:63824666..63826235+ go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **** C0LNQ9_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00007800g0006.1 protein AED:0.31 eAED:0.31 QI:245|0|0.5|1|0|0.5|2|271|133; (*GB) gi|224139144|ref|XP_002322991.1| (e_value=7e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|P33303|SFC1_YEAST (e_value=9e-15) Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFC1 PE=1 SV=2;; (*TAIR) AT5G01340.1 (e_value=1e-70) | Symbols: | Mitochondrial substrate carrier family protein | chr5:143240-144561 REVERSE LENGTH=309;; (*ITAG) Solyc10g085220.1.1 (e_value=3e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63813410-63821534 transcript_region:SL2.40ch10:63813410..63821534+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 *-*- Q10MX0_ORYSJ); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0016020,GO:0005743 NbS00007800g0018.1 protein AED:0.39 eAED:0.39 QI:180|0.66|0.75|0.75|0.66|0.75|4|0|73; (*GB) gi|225439394|ref|XP_002263632.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100266117 [Vitis vinifera];; (*TAIR) AT5G01350.1 (e_value=1e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:145865-146911 REVERSE LENGTH=72; NbS00009448g0008.1 protein AED:0.04 eAED:0.04 QI:308|1|1|1|0.75|1|5|82|467; (*GB) gi|302143083|emb|CBI20378.3| (e_value=5e-72) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g006810.2.1 (e_value=3e-135) genomic_reference:SL2.40ch10 gene_region:1248883-1253524 transcript_region:SL2.40ch10:1248883..1253524- functional_description:"Cyclic nucleotide-gated channel (AHRD V1 ***- B9I014_POPTR)"; NbS00003961g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|528; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=8e-178) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=1e-153) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003961g0008.1 protein AED:0.24 eAED:0.24 QI:92|1|1|1|1|1|2|600|427; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=0.0) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=3e-161) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46012103-46015232 transcript_region:SL2.40ch02:46012103..46015232+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003961g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|170; (*GB) gi|388495852|gb|AFK35992.1| (e_value=9e-62) unknown [Lotus japonicus];; (*TAIR) AT5G15900.1 (e_value=3e-47) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089680.2.1 (e_value=3e-91) genomic_reference:SL2.40ch02 gene_region:46012103-46015232 transcript_region:SL2.40ch02:46012103..46015232+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00030055g0005.1 protein AED:0.07 eAED:0.07 QI:91|0.9|0.81|1|0.9|0.81|11|370|512; (*GB) gi|47933777|gb|AAT39459.1| (e_value=0.0) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=0.0) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=2e-178) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g018700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22827490-22832816 transcript_region:SL2.40ch05:22827490..22832816- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756,GO:0005515 NbS00026736g0005.1 protein AED:0.14 eAED:0.16 QI:0|0.78|0.65|1|0.68|0.75|20|616|834; (*GB) gi|297734460|emb|CBI15707.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BMD7|MORC4_MOUSE (e_value=1e-44) MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2;; (*TAIR) AT4G24970.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc03g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53302012-53315859 transcript_region:SL2.40ch03:53302012..53315859+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger protein 4 (AHRD V1 *--- A1YR23_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00036841g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|126; (*GB) gi|224139494|ref|XP_002323139.1| (e_value=3e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK5|RAA5A_ARATH (e_value=1e-57) Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1;; (*TAIR) AT5G47520.1 (e_value=1e-58) | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277596-19278366 REVERSE LENGTH=221;; (*ITAG) Solyc05g054150.2.1 (e_value=2e-69) genomic_reference:SL2.40ch05 gene_region:63253042-63255141 transcript_region:SL2.40ch05:63253042..63255141+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00028372g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|96; (*GB) gi|57013962|ref|YP_173434.1| (e_value=7e-61) hypothetical protein NitaMp095 [Nicotiana tabacum];; (*ITAG) Solyc08g036500.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:25575333-25575776 transcript_region:SL2.40ch08:25575333..25575776- functional_description:"Uncharacterized mitochondrial protein AtMg00660 (AHRD V1 **-- M660_ARATH)"; NbS00018211g0013.1 protein AED:0.09 eAED:0.11 QI:146|0.81|0.91|1|0.54|0.66|12|177|454; (*GB) gi|225431509|ref|XP_002274967.1| (e_value=0.0) PREDICTED: chromatin assembly factor 1 subunit B [Vitis vinifera];; (*SWP) sp|Q5R1S9|CAF1B_CHICK (e_value=4e-90) Chromatin assembly factor 1 subunit B OS=Gallus gallus GN=CHAF1B PE=1 SV=1;; (*TAIR) AT5G64630.2 (e_value=0.0) | Symbols: FAS2, NFB01, NFB1, MUB3.9 | Transducin/WD40 repeat-like superfamily protein | chr5:25833298-25836158 FORWARD LENGTH=487;; (*ITAG) Solyc11g005800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:647703-653626 transcript_region:SL2.40ch11:647703..653626- functional_description:"Chromatin assembly factor 1 subunit B (AHRD V1 **-- B4FIA4_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00018211g0003.1 protein AED:0.23 eAED:0.24 QI:921|0.75|0.8|1|0|0.2|5|0|281; (*GB) gi|255566126|ref|XP_002524051.1| (e_value=2e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27620.2 (e_value=3e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27610.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:13789059-13790516 REVERSE LENGTH=325;; (*ITAG) Solyc11g005810.1.1 (e_value=9e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:654395-656479 transcript_region:SL2.40ch11:654395..656479- functional_description:"Unknown Protein (AHRD V1)"; NbS00018211g0015.1 protein AED:0.20 eAED:0.38 QI:86|0|0|0.75|0.33|0.25|4|0|205; (*GB) gi|57013948|ref|YP_173421.1| (e_value=1e-82) hypothetical protein NitaMp079 [Nicotiana tabacum]; NbS00018211g0014.1 protein AED:0.27 eAED:0.28 QI:0|1|0.33|1|1|0.66|3|0|432; (*GB) gi|255552418|ref|XP_002517253.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G48880.1 (e_value=0.0) | Symbols: TBL7 | TRICHOME BIREFRINGENCE-LIKE 7 | chr1:18081033-18082650 FORWARD LENGTH=445;; (*ITAG) Solyc11g005790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:643991-647079 transcript_region:SL2.40ch11:643991..647079+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00018211g0018.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|0|0.33|3|0|151; (*GB) gi|116830429|gb|ABK28172.1| (e_value=7e-18) unknown [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=3e-19) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=2e-20) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g028150.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00024740g0004.1 protein AED:0.19 eAED:0.19 QI:217|1|1|1|1|1|5|457|250; (*GB) gi|351726166|ref|NP_001237885.1| (e_value=3e-132) PHD5 [Glycine max];; (*SWP) sp|Q8LA16|ALFL7_ARATH (e_value=6e-122) PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1;; (*TAIR) AT1G14510.1 (e_value=5e-123) | Symbols: AL7 | alfin-like 7 | chr1:4962171-4964154 REVERSE LENGTH=252;; (*ITAG) Solyc01g102760.2.1 (e_value=7e-135) genomic_reference:SL2.40ch01 gene_region:83252023-83258088 transcript_region:SL2.40ch01:83252023..83258088+ functional_description:"PHD finger family protein (AHRD V1 ***- D7KBK9_ARALY)"; NbS00007009g0007.1 protein AED:0.10 eAED:0.10 QI:236|0.93|1|1|0.68|0.82|17|414|741; (*GB) gi|255582311|ref|XP_002531946.1| (e_value=0.0) acetyltransferase, putative [Ricinus communis];; (*SWP) sp|Q7T322|NAA35_DANRE (e_value=4e-54) N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Danio rerio GN=naa35 PE=1 SV=1;; (*TAIR) AT2G11000.1 (e_value=0.0) | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:4341328-4347768 REVERSE LENGTH=728;; (*ITAG) Solyc07g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2458556-2475894 transcript_region:SL2.40ch07:2458556..2475894+ go_terms:GO:0016407 functional_description:"N-alpha-acetyltransferase 35, NatC auxiliary subunit (AHRD V1 **** NAA35_CHICK); contains Interpro domain(s) IPR007244 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase "; GO:0016407 NbS00047205g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0|1|0|0|6|0|198; (*GB) gi|349892287|gb|AEQ20879.1| (e_value=3e-40) plastid lipid-associated protein, partial [Eriobotrya japonica];; (*SWP) sp|Q941D3|PAP8_ARATH (e_value=1e-33) Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1;; (*TAIR) AT5G19940.1 (e_value=8e-35) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:6739693-6740661 FORWARD LENGTH=239;; (*ITAG) Solyc08g006160.2.1 (e_value=2e-56) genomic_reference:SL2.40ch08 gene_region:880634-883706 transcript_region:SL2.40ch08:880634..883706- go_terms:GO:0009507 functional_description:"Plastid fibrillin 3 (Fragment) (AHRD V1 **-- A6XBK9_COFCA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00001526g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.94|1|1|0.88|0.94|18|389|1053; (*GB) gi|350537001|ref|NP_001234275.1| (e_value=0.0) DNA damage-binding protein 1 [Solanum lycopersicum];; (*SWP) sp|Q6QNU4|DDB1_SOLLC (e_value=0.0) DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1;; (*TAIR) AT4G05420.1 (e_value=0.0) | Symbols: DDB1A | damaged DNA binding protein 1A | chr4:2746288-2752663 FORWARD LENGTH=1088;; (*ITAG) Solyc02g021650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14069797-14090192 transcript_region:SL2.40ch02:14069797..14090192- go_terms:GO:0005515,GO:0003684 functional_description:"DNA damage-binding protein 1 (AHRD V1 **** C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515,GO:0003684 NbS00001526g0219.1 protein AED:0.16 eAED:0.16 QI:705|0.75|0.6|1|0.75|0.6|5|288|667 NbS00001526g0218.1 protein AED:0.34 eAED:0.53 QI:0|0|0|0.75|0.33|0.25|4|0|187 NbS00001526g0215.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.2|1|1|5|0|174 NbS00001526g0216.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|0|0|4|0|174 NbS00001526g0222.1 protein AED:0.49 eAED:0.51 QI:0|0|0|0.5|0|0|4|0|145 NbS00001526g0221.1 protein AED:0.54 eAED:0.73 QI:0|0|0|0.75|0|0|4|0|111 NbS00022037g0017.1 protein AED:0.22 eAED:0.22 QI:347|1|0.86|1|0.85|0.86|15|0|479; (*GB) gi|359493020|ref|XP_002264907.2| (e_value=0.0) PREDICTED: histidinol dehydrogenase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C5U8|HISX_ARATH (e_value=0.0) Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HDH PE=2 SV=1;; (*TAIR) AT5G63890.1 (e_value=0.0) | Symbols: ATHDH, HISN8, HDH | histidinol dehydrogenase | chr5:25565600-25567879 REVERSE LENGTH=452;; (*ITAG) Solyc02g071890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35843032-35848958 transcript_region:SL2.40ch02:35843032..35848958+ go_terms:GO:0004399 functional_description:"Histidinol dehydrogenase (AHRD V1 **** B9GH07_POPTR); contains Interpro domain(s) IPR012131 Histidinol dehydrogenase, prokaryotic-type "; GO:0004399 NbS00022037g0010.1 protein AED:0.18 eAED:0.22 QI:0|0.33|0|1|0.33|0|4|0|606; (*GB) gi|225443700|ref|XP_002264921.1| (e_value=4e-111) PREDICTED: uncharacterized protein LOC100241279 [Vitis vinifera];; (*TAIR) AT2G34380.1 (e_value=8e-93) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr2:14512777-14514306 FORWARD LENGTH=509;; (*ITAG) Solyc02g071900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35851658-35854481 transcript_region:SL2.40ch02:35851658..35854481+ functional_description:"Seipin (AHRD V1 *-*- Q5BIQ8_BOVIN); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00022037g0012.1 protein AED:0.13 eAED:0.15 QI:189|0.75|0.8|1|0.75|0.6|5|0|277; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=2e-123) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q8LFP7|NIP12_ARATH (e_value=2e-103) Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2;; (*TAIR) AT4G18910.1 (e_value=1e-104) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc02g071920.2.1 (e_value=4e-145) genomic_reference:SL2.40ch02 gene_region:35857616-35861426 transcript_region:SL2.40ch02:35857616..35861426- go_terms:GO:0015250 functional_description:"Transmembrane water channel Aquaporin Z (AHRD V1 **** B7VL99_VIBSL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00022037g0011.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|4|0|182; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=1e-74) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q8LFP7|NIP12_ARATH (e_value=7e-71) Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2;; (*TAIR) AT4G18910.1 (e_value=5e-72) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc02g071920.2.1 (e_value=2e-74) genomic_reference:SL2.40ch02 gene_region:35857616-35861426 transcript_region:SL2.40ch02:35857616..35861426- go_terms:GO:0015250 functional_description:"Transmembrane water channel Aquaporin Z (AHRD V1 **** B7VL99_VIBSL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00005205g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.8|1|1|1|5|0|260; (*GB) gi|225436460|ref|XP_002274821.1| (e_value=2e-117) PREDICTED: uncharacterized protein LOC100253409 [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=6e-94) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc11g066380.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49235503-49238383 transcript_region:SL2.40ch11:49235503..49238383+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00047419g0011.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.5|1|0.66|0.75|4|0|310; (*GB) gi|255545176|ref|XP_002513649.1| (e_value=1e-131) heat shock protein, putative [Ricinus communis];; (*SWP) sp|P51819|HSP83_IPONI (e_value=2e-132) Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1;; (*TAIR) AT5G52640.1 (e_value=4e-132) | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352542-21355147 FORWARD LENGTH=705;; (*ITAG) Solyc06g036290.2.1 (e_value=1e-133) genomic_reference:SL2.40ch06 gene_region:22492761-22495996 transcript_region:SL2.40ch06:22492761..22495996+ go_terms:GO:0042623,GO:0005524 functional_description:"Heat shock protein 90 (Fragment) (AHRD V1 **-- Q00NU9_WHEAT); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623,GO:0005524 NbS00047419g0006.1 protein AED:0.27 eAED:0.33 QI:0|0|0|0.66|1|1|6|0|448; (*ITAG) Solyc03g007880.1.1 (e_value=1e-141) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:2404362-2409402 transcript_region:SL2.40ch03:2404362..2409402- functional_description:"Unknown Protein (AHRD V1)"; NbS00047419g0010.1 protein AED:0.43 eAED:0.78 QI:0|0|0|1|0|0|3|0|97; (*ITAG) Solyc03g007880.1.1 (e_value=1e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:2404362-2409402 transcript_region:SL2.40ch03:2404362..2409402- functional_description:"Unknown Protein (AHRD V1)"; NbS00054941g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|255572268|ref|XP_002527073.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|O34739|STET_BACSU (e_value=1e-11) Serine/threonine exchanger SteT OS=Bacillus subtilis (strain 168) GN=steT PE=1 SV=1;; (*TAIR) AT3G13620.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr3:4450904-4452556 REVERSE LENGTH=478;; (*ITAG) Solyc01g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:600898-602616 transcript_region:SL2.40ch01:600898..602616- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00034373g0002.1 protein AED:0.19 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|124; (*ITAG) Solyc08g075900.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57150765-57151544 transcript_region:SL2.40ch08:57150765..57151544- functional_description:"B3 domain-containing protein At2g33720 (AHRD V1 *-*- Y2372_ARATH)"; NbS00017785g0003.1 protein AED:0.12 eAED:0.12 QI:136|0.8|0.5|1|1|1|6|0|351; (*GB) gi|225469840|ref|XP_002265335.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100258674 [Vitis vinifera];; (*TAIR) AT4G17540.1 (e_value=5e-21) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9775982-9777765 FORWARD LENGTH=294;; (*ITAG) Solyc06g060890.2.1 (e_value=2e-94) genomic_reference:SL2.40ch06 gene_region:35288453-35291763 transcript_region:SL2.40ch06:35288453..35291763+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030886g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|255554749|ref|XP_002518412.1| (e_value=5e-141) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46700.1 (e_value=1e-116) | Symbols: TET1, TRN2 | Tetraspanin family protein | chr5:18951035-18952439 FORWARD LENGTH=269;; (*ITAG) Solyc08g076850.2.1 (e_value=8e-156) genomic_reference:SL2.40ch08 gene_region:57913123-57915117 transcript_region:SL2.40ch08:57913123..57915117+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00043459g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|359485811|ref|XP_003633339.1| (e_value=5e-30) PREDICTED: uncharacterized protein LOC100853006 [Vitis vinifera];; (*TAIR) AT4G28240.1 (e_value=9e-22) | Symbols: | Wound-responsive family protein | chr4:13997979-13998239 REVERSE LENGTH=86;; (*ITAG) Solyc07g054730.1.1 (e_value=1e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60279267-60279557 transcript_region:SL2.40ch07:60279267..60279557- functional_description:"Wound-responsive protein-related (AHRD V1 ***- A8IXM2_BRACM)"; NbS00007762g0105.1 protein AED:0.20 eAED:0.21 QI:0|0|0.33|1|0|0.66|3|306|507 NbS00007762g0210.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|0|2|491|321 NbS00032022g0009.1 protein AED:0.04 eAED:0.04 QI:306|1|0.85|1|0.83|0.85|7|156|507; (*GB) gi|296087695|emb|CBI34951.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G70280.2 (e_value=9e-160) | Symbols: | NHL domain-containing protein | chr1:26466086-26468471 REVERSE LENGTH=509;; (*ITAG) Solyc02g087010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44144541-44148357 transcript_region:SL2.40ch02:44144541..44148357+ functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KY00_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00032022g0010.1 protein AED:0.12 eAED:0.12 QI:582|0.66|0.71|1|0.83|1|7|0|751; (*GB) gi|112259089|gb|ABI14646.1| (e_value=0.0) putative high-affinity potassium transporter protein 1 [Nicotiana tabacum];; (*SWP) sp|Q9M7J9|POT8_ARATH (e_value=0.0) Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2;; (*TAIR) AT5G14880.1 (e_value=0.0) | Symbols: | Potassium transporter family protein | chr5:4814244-4817667 FORWARD LENGTH=781;; (*ITAG) Solyc02g087000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44137630-44143256 transcript_region:SL2.40ch02:44137630..44143256+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00041680g0021.1 protein AED:0.18 eAED:0.22 QI:0|0.42|0.25|1|0.85|0.75|8|0|1390; (*GB) gi|297742337|emb|CBI34486.3| (e_value=8e-179) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G53440.1 (e_value=4e-75) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21683679-21687970 REVERSE LENGTH=1181;; (*ITAG) Solyc08g082410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62387542-62395462 transcript_region:SL2.40ch08:62387542..62395462+ functional_description:"Eukaryotic translation initiation factor 3 subunit 10-like (AHRD V1 *--- Q5SN81_ORYSJ)"; NbS00041680g0016.1 protein AED:0.23 eAED:0.23 QI:207|0.8|1|1|1|1|6|1733|220; (*GB) gi|294862567|gb|ADF45668.1| (e_value=5e-135) nucleoside diphosphate kinase 1 [Solanum tuberosum];; (*SWP) sp|Q8RXA8|NDK4_SPIOL (e_value=9e-115) Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1;; (*TAIR) AT4G23900.1 (e_value=9e-112) | Symbols: | Nucleoside diphosphate kinase family protein | chr4:12424505-12426318 FORWARD LENGTH=237;; (*ITAG) Solyc08g082430.2.1 (e_value=5e-138) genomic_reference:SL2.40ch08 gene_region:62404261-62407246 transcript_region:SL2.40ch08:62404261..62407246+ go_terms:GO:0008270 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- D5ILC3_SOLTU); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0008270 NbS00041680g0003.1 protein AED:0.47 eAED:0.47 QI:0|0.33|0.25|1|1|1|4|0|101; (*GB) gi|359473918|ref|XP_002269576.2| (e_value=2e-41) PREDICTED: uncharacterized protein LOC100263310 [Vitis vinifera];; (*TAIR) AT4G23895.2 (e_value=1e-44) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr4:12422883-12424146 FORWARD LENGTH=247;; (*ITAG) Solyc08g082420.2.1 (e_value=1e-59) genomic_reference:SL2.40ch08 gene_region:62399322-62402936 transcript_region:SL2.40ch08:62399322..62402936+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00011322g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|132|233 NbS00041030g0015.1 protein AED:0.31 eAED:0.31 QI:772|1|0.8|1|0.5|0.6|5|0|206; (*GB) gi|325516270|gb|ADZ24713.1| (e_value=2e-122) phosphoribosylanthranilate isomerase [Solanum pennellii];; (*SWP) sp|Q42440|PAI1_ARATH (e_value=2e-97) N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PAI1 PE=1 SV=1;; (*TAIR) AT1G07780.5 (e_value=1e-98) | Symbols: PAI1 | phosphoribosylanthranilate isomerase 1 | chr1:2410352-2411833 REVERSE LENGTH=275;; (*ITAG) Solyc02g076760.2.1 (e_value=4e-128) genomic_reference:SL2.40ch02 gene_region:36441000-36442296 transcript_region:SL2.40ch02:36441000..36442296- go_terms:GO:0008881,GO:0004640 functional_description:"N-(5&apos-phosphoribosyl)anthranilate isomerase (AHRD V1 **** B9SQM9_RICCO); contains Interpro domain(s) IPR011060 Ribulose-phosphate binding barrel "; GO:0008881,GO:0004640 NbS00041030g0011.1 protein AED:0.57 eAED:0.63 QI:13|1|0|1|1|0.5|2|0|70 NbS00041030g0013.1 protein AED:0.15 eAED:0.18 QI:0|0.33|0.25|1|0.33|0.25|4|224|169; (*GB) gi|1694625|dbj|BAA11475.1| (e_value=4e-63) omega-3 fatty acid desaturase [Nicotiana tabacum];; (*SWP) sp|P48620|FAD3C_SESIN (e_value=8e-58) Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=8e-59) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g051400.2.1 (e_value=4e-62) genomic_reference:SL2.40ch06 gene_region:31251815-31254230 transcript_region:SL2.40ch06:31251815..31254230+ go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** Q7X7I9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00041030g0009.1 protein AED:0.18 eAED:0.24 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc06g011460.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00007420g0005.1 protein AED:0.04 eAED:0.04 QI:197|0.5|0.66|1|1|1|3|195|527; (*GB) gi|225426178|ref|XP_002279187.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267372 [Vitis vinifera];; (*TAIR) AT5G41460.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524;; (*ITAG) Solyc12g056200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47513359-47516205 transcript_region:SL2.40ch12:47513359..47516205+ functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00007420g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|140 NbS00038377g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|85 NbS00022329g0008.1 protein AED:0.26 eAED:0.27 QI:0|1|0.83|1|0.88|0.94|18|228|569; (*GB) gi|255566247|ref|XP_002524111.1| (e_value=0.0) d-lactate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q94AX4|DLD_ARATH (e_value=0.0) D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1;; (*TAIR) AT5G06580.1 (e_value=0.0) | Symbols: | FAD-linked oxidases family protein | chr5:2011486-2016473 REVERSE LENGTH=567;; (*ITAG) Solyc11g045370.1.1 (e_value=4e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37698878-37711539 transcript_region:SL2.40ch11:37698878..37711539+ go_terms:GO:0050660 functional_description:"D-lactate dehydrogenase (AHRD V1 **-- B6K538_SCHJY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00022709g0006.1 protein AED:0.08 eAED:0.09 QI:0|0.77|0.8|1|0.66|0.7|10|1146|377; (*GB) gi|255568569|ref|XP_002525258.1| (e_value=3e-176) casein kinase II, alpha chain, putative [Ricinus communis];; (*SWP) sp|O64816|CSK2P_ARATH (e_value=1e-171) Casein kinase II subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g23070 PE=2 SV=1;; (*TAIR) AT2G23070.1 (e_value=8e-173) | Symbols: | Protein kinase superfamily protein | chr2:9824162-9826871 REVERSE LENGTH=432;; (*ITAG) Solyc02g064700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30373054-30382119 transcript_region:SL2.40ch02:30373054..30382119- go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3B471_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00022217g0004.1 protein AED:0.21 eAED:0.21 QI:283|0.93|1|1|0.93|0.88|17|503|702; (*GB) gi|350535937|ref|NP_001234477.1| (e_value=0.0) plasma membrane H+-ATPase [Solanum lycopersicum];; (*SWP) sp|P23980|PMA2_SOLLC (e_value=0.0) Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc06g071100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00043119g0004.1 protein AED:0.17 eAED:0.17 QI:237|0|0.66|0.66|1|1|3|407|68; (*GB) gi|225456590|ref|XP_002266901.1| (e_value=1e-19) PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Vitis vinifera];; (*SWP) sp|Q9SD80|TOM5_ARATH (e_value=5e-16) Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3;; (*TAIR) AT5G08040.1 (e_value=4e-17) | Symbols: TOM5 | mitochondrial import receptor subunit TOM5 homolog | chr5:2577358-2578073 REVERSE LENGTH=54;; (*ITAG) Solyc03g115030.2.1 (e_value=4e-28) genomic_reference:SL2.40ch03 gene_region:58933142-58935283 transcript_region:SL2.40ch03:58933142..58935283+ functional_description:"Mitochondrial import receptor subunit TOM5 homolog (AHRD V1 ***- TOM5_ARATH)"; NbS00006961g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|0|2|0|126; (*GB) gi|37572451|dbj|BAC98495.1| (e_value=1e-33) AG-motif binding protein-5 [Nicotiana tabacum];; (*ITAG) Solyc05g056120.2.1 (e_value=5e-13) genomic_reference:SL2.40ch05 gene_region:64658159-64662581 transcript_region:SL2.40ch05:64658159..64662581- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00048185g0001.1 protein AED:0.07 eAED:0.84 QI:331|0|0.5|1|0|0.5|2|115|109 NbS00031431g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|350539854|ref|NP_001233783.1| (e_value=1e-68) TCP transcription factor 1 [Solanum lycopersicum];; (*SWP) sp|O82277|TCP10_ARATH (e_value=5e-33) Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1;; (*TAIR) AT2G31070.1 (e_value=4e-34) | Symbols: TCP10 | TCP domain protein 10 | chr2:13220984-13222069 REVERSE LENGTH=361;; (*ITAG) Solyc10g008780.1.1 (e_value=4e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2855509-2857257 transcript_region:SL2.40ch10:2855509..2857257+ functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00016817g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.85|1|1|1|7|0|811; (*GB) gi|27529836|dbj|BAC53933.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT2G42320.2 (e_value=0.0) | Symbols: | nucleolar protein gar2-related | chr2:17628102-17630657 FORWARD LENGTH=669;; (*ITAG) Solyc03g051790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:18795546-18800624 transcript_region:SL2.40ch03:18795546..18800624+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00049761g0007.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|156763854|emb|CAO99129.1| (e_value=4e-28) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT1G24480.1 (e_value=9e-27) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8676440-8677159 REVERSE LENGTH=239;; (*ITAG) Solyc10g083390.1.1 (e_value=7e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62538764-62539525 transcript_region:SL2.40ch10:62538764..62539525- go_terms:GO:0008152 functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00049761g0016.1 protein AED:0.17 eAED:0.17 QI:81|0.25|0.22|0.77|0.12|0.11|9|0|1098; (*GB) gi|296081406|emb|CBI16839.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G37190.1 (e_value=2e-19) | Symbols: CIP4 | COP1-interacting protein 4 | chr5:14723362-14726694 REVERSE LENGTH=876;; (*ITAG) Solyc05g014130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7825077-7831106 transcript_region:SL2.40ch05:7825077..7831106- functional_description:"COP1-interacting protein 4 (AHRD V1 *--- Q9C5U5_ARATH)"; NbS00049761g0012.1 protein AED:0.18 eAED:0.18 QI:213|1|1|1|0.9|0.90|11|540|549; (*GB) gi|343171890|gb|AEL98649.1| (e_value=8e-179) ALBINO3-like protein, partial [Silene latifolia];; (*SWP) sp|Q9FYL3|ALB31_ARATH (e_value=5e-157) ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3;; (*TAIR) AT1G24490.1 (e_value=4e-158) | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane insertion protein | chr1:8682364-8684966 FORWARD LENGTH=499;; (*ITAG) Solyc05g014050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7616440-7621671 transcript_region:SL2.40ch05:7616440..7621671- go_terms:GO:0016021 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- B9L0L4_THERP); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0016021 NbS00049761g0011.1 protein AED:0.16 eAED:0.18 QI:0|0.6|0.5|1|1|1|6|0|554; (*GB) gi|356567464|ref|XP_003551939.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=8e-23) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT3G26100.2 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:9538063-9540149 FORWARD LENGTH=532;; (*ITAG) Solyc05g014030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7532703-7535318 transcript_region:SL2.40ch05:7532703..7535318- go_terms:GO:0003682 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 **-- Q8MP76_DICDI); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682 NbS00000391g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.4|1|1|0.8|5|0|1141; (*GB) gi|359473162|ref|XP_002282137.2| (e_value=0.0) PREDICTED: ABC transporter B family member 15-like [Vitis vinifera];; (*SWP) sp|Q6YUU5|MDR_ORYSJ (e_value=0.0) Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1;; (*TAIR) AT3G28345.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc05g013890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:7340410-7343439 transcript_region:SL2.40ch05:7340410..7343439- go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00000391g0111.1 protein AED:0.09 eAED:0.10 QI:35|0.75|0.8|1|0.75|0.6|5|0|354 NbS00000391g0113.1 protein AED:0.35 eAED:0.41 QI:0|0|0|0.5|0|1|2|0|252 NbS00000391g0310.1 protein AED:0.05 eAED:0.07 QI:0|0.14|0|0.75|0.42|0.25|8|0|735 NbS00022374g0017.1 protein AED:0.29 eAED:0.29 QI:377|0.84|0.85|1|0.76|0.64|14|242|525; (*GB) gi|255554529|ref|XP_002518303.1| (e_value=0.0) Palmitoyltransferase TIP1, putative [Ricinus communis];; (*SWP) sp|Q3EC11|ZDHC2_ARATH (e_value=0.0) Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2;; (*TAIR) AT2G14255.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein with DHHC zinc finger domain | chr2:6036974-6040892 FORWARD LENGTH=536;; (*ITAG) Solyc01g106440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86093522-86101805 transcript_region:SL2.40ch01:86093522..86101805+ go_terms:GO:0019706 functional_description:"Ankyrin repeat-containing protein-like (AHRD V1 **-- Q67WP3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0019706 NbS00022374g0006.1 protein AED:0.10 eAED:0.33 QI:0|0.33|0|0.5|1|1|4|0|337; (*GB) gi|359475553|ref|XP_002268443.2| (e_value=2e-97) PREDICTED: transcription factor bHLH25-like [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=1e-49) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=8e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc01g106460.2.1 (e_value=1e-110) genomic_reference:SL2.40ch01 gene_region:86111229-86112985 transcript_region:SL2.40ch01:86111229..86112985+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00022374g0014.1 protein AED:0.33 eAED:0.33 QI:72|1|0.5|1|1|1|2|11|110; (*GB) gi|356573785|ref|XP_003555036.1| (e_value=7e-15) PREDICTED: uncharacterized protein LOC100797980 [Glycine max]; NbS00022374g0004.1 protein AED:0.21 eAED:0.21 QI:307|0.66|1|1|1|1|4|338|281; (*GB) gi|77999796|gb|ABB17078.1| (e_value=0.0) L-galactose dehydrogenase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q52472|FCDH_PSESP (e_value=3e-28) D-threo-aldose 1-dehydrogenase OS=Pseudomonas sp. GN=fdh PE=1 SV=1;; (*TAIR) AT4G33670.1 (e_value=3e-159) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr4:16169670-16171446 REVERSE LENGTH=319;; (*ITAG) Solyc01g106450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86101970-86105020 transcript_region:SL2.40ch01:86101970..86105020- go_terms:GO:0010349 functional_description:"L-galactose dehydrogenase (AHRD V1 **-* Q07A10_NICLS); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0010349 NbS00027211g0002.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|188|352; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=2e-56) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G49620.1 (e_value=5e-84) | Symbols: AtMYB78, MYB78 | myb domain protein 78 | chr5:20137491-20139384 REVERSE LENGTH=307;; (*ITAG) Solyc05g053330.2.1 (e_value=1e-121) genomic_reference:SL2.40ch05 gene_region:62594925-62596759 transcript_region:SL2.40ch05:62594925..62596759+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00021595g0013.1 protein AED:0.11 eAED:0.11 QI:0|1|0.71|1|1|0.85|7|0|516; (*GB) gi|145839433|gb|ABP96799.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SFU3|PPA15_ARATH (e_value=0.0) Purple acid phosphatase 15 OS=Arabidopsis thaliana GN=PAP15 PE=1 SV=1;; (*TAIR) AT3G07130.1 (e_value=0.0) | Symbols: ATPAP15, PAP15 | purple acid phosphatase 15 | chr3:2255763-2257981 REVERSE LENGTH=532;; (*ITAG) Solyc09g091910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66470168-66474547 transcript_region:SL2.40ch09:66470168..66474547+ go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** A5YBN1_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00021595g0015.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|1|1|3|0|184; (*GB) gi|363814314|ref|NP_001242796.1| (e_value=2e-30) uncharacterized protein LOC100779749 precursor [Glycine max];; (*SWP) sp|Q8VYE5|E1312_ARATH (e_value=1e-13) Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1;; (*TAIR) AT4G13600.1 (e_value=1e-27) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr4:7911179-7912892 REVERSE LENGTH=231;; (*ITAG) Solyc09g091920.2.1 (e_value=7e-40) genomic_reference:SL2.40ch09 gene_region:66475576-66478070 transcript_region:SL2.40ch09:66475576..66478070- functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00021595g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|1090; (*GB) gi|356569135|ref|XP_003552761.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Glycine max];; (*SWP) sp|Q8W4N3|UBP2_ARATH (e_value=2e-124) Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2;; (*TAIR) AT1G04860.1 (e_value=2e-125) | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2 | chr1:1369306-1372290 REVERSE LENGTH=961;; (*ITAG) Solyc09g091930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66480425-66485545 transcript_region:SL2.40ch09:66480425..66485545- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-** B9GFW8_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00021595g0010.1 protein AED:0.06 eAED:0.08 QI:239|0.5|0.8|1|0.25|0.6|5|271|220; (*GB) gi|298201211|gb|ADI60301.1| (e_value=6e-79) ER luminal protein receptor 2b [Nicotiana benthamiana];; (*SWP) sp|Q9ZTN2|ERD2_PETHY (e_value=7e-68) ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1;; (*TAIR) AT3G25040.1 (e_value=6e-69) | Symbols: ERD2B | endoplasmic reticulum retention defective 2B | chr3:9124479-9126051 FORWARD LENGTH=215;; (*ITAG) Solyc09g091900.2.1 (e_value=2e-69) genomic_reference:SL2.40ch09 gene_region:66459355-66464556 transcript_region:SL2.40ch09:66459355..66464556- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor (AHRD V1 ***- D7PF42_NICBE); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00043206g0008.1 protein AED:0.08 eAED:0.08 QI:164|1|1|1|1|1|7|242|380; (*GB) gi|389986105|gb|AFL46170.1| (e_value=0.0) jasmonate ZIM domain protein e [Nicotiana attenuata];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=4e-40) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.1 (e_value=3e-41) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6119968-6122691 FORWARD LENGTH=352;; (*ITAG) Solyc03g118540.2.1 (e_value=2e-168) genomic_reference:SL2.40ch03 gene_region:61483425-61486803 transcript_region:SL2.40ch03:61483425..61486803+ go_terms:GO:0042802 functional_description:"Protein TIFY 6B (AHRD V1 **-- TIF6B_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00043206g0011.1 protein AED:0.35 eAED:0.35 QI:0|0.45|0.58|1|0.36|0.25|12|0|436; (*GB) gi|18041548|gb|AAL54858.1| (e_value=2e-149) tetratricoredoxin [Nicotiana tabacum];; (*SWP) sp|Q8VWG7|TDX_ARATH (e_value=5e-83) TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1;; (*TAIR) AT3G17880.2 (e_value=3e-84) | Symbols: HIP, ATTDX, ATHIP2, TDX | tetraticopeptide domain-containing thioredoxin | chr3:6123534-6126113 FORWARD LENGTH=373;; (*ITAG) Solyc03g118550.2.1 (e_value=1e-130) genomic_reference:SL2.40ch03 gene_region:61487486-61491647 transcript_region:SL2.40ch03:61487486..61491647+ go_terms:GO:0030544 functional_description:"Thioredoxin h2 (AHRD V1 *-*- A1BLP7_MEDTR); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0030544 NbS00029490g0001.1 protein AED:0.14 eAED:0.53 QI:52|0|0.5|1|0|0.5|2|152|60 NbS00019800g0009.1 protein AED:0.20 eAED:0.21 QI:0|0.86|0.78|1|0.77|0.78|23|0|992; (*GB) gi|365222948|gb|AEW69826.1| (e_value=0.0) Hop-interacting protein THI140 [Solanum lycopersicum];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc06g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00019800g0008.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.33|1|1|3|0|129; (*ITAG) Solyc06g073960.2.1 (e_value=3e-13) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00004809g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|3|0|234; (*GB) gi|224053166|ref|XP_002297714.1| (e_value=9e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g072550.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00049701g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=5e-69) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=2e-56) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=2e-57) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc12g015690.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5671093-5671896 transcript_region:SL2.40ch12:5671093..5671896+ functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00024312g0016.1 protein AED:0.13 eAED:0.14 QI:12|1|0.66|1|1|0.33|3|0|220; (*GB) gi|359486048|ref|XP_002270184.2| (e_value=3e-88) PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WVV0|PPR31_ARATH (e_value=1e-80) Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1;; (*TAIR) AT1G10910.1 (e_value=7e-82) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3639908-3643974 FORWARD LENGTH=664;; (*ITAG) Solyc11g040240.1.1 (e_value=5e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30306489-30315715 transcript_region:SL2.40ch11:30306489..30315715+ functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q3S7_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024312g0015.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|204; (*GB) gi|298204500|emb|CBI23775.3| (e_value=5e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|B7IFE0|DNAJ_THEAB (e_value=6e-15) Chaperone protein DnaJ OS=Thermosipho africanus (strain TCF52B) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G03160.1 (e_value=4e-13) | Symbols: ATP58IPK, P58IPK | homolog of mamallian P58IPK | chr5:750286-752671 FORWARD LENGTH=482;; (*ITAG) Solyc11g044450.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35690897-35692249 transcript_region:SL2.40ch11:35690897..35692249+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 *-*- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00029277g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005633g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|207; (*GB) gi|359485422|ref|XP_002275844.2| (e_value=4e-52) PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=4e-49) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=3e-50) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc12g010810.1.1 (e_value=6e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3722630-3723262 transcript_region:SL2.40ch12:3722630..3723262+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00005633g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|4|0|294; (*GB) gi|255551545|ref|XP_002516818.1| (e_value=2e-120) s-adenosylmethionine decarboxylase, putative [Ricinus communis];; (*SWP) sp|O49972|DCAM2_BRAJU (e_value=2e-59) S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1;; (*TAIR) AT5G18930.1 (e_value=3e-98) | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarboxylase family protein | chr5:6312172-6313215 REVERSE LENGTH=347;; (*ITAG) Solyc06g054460.1.1 (e_value=3e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33715579-33716595 transcript_region:SL2.40ch06:33715579..33716595- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00005633g0008.1 protein AED:0.31 eAED:0.31 QI:336|1|0.88|1|0.75|0.55|9|0|609; (*GB) gi|359477463|ref|XP_002279087.2| (e_value=0.0) PREDICTED: F-box/LRR-repeat protein 4-like [Vitis vinifera];; (*SWP) sp|Q9C5D2|FBL4_ARATH (e_value=0.0) F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1;; (*TAIR) AT4G15475.1 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr4:8845927-8848701 FORWARD LENGTH=610;; (*ITAG) Solyc06g054440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33700999-33706694 transcript_region:SL2.40ch06:33700999..33706694+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00022510g0009.1 protein AED:0.04 eAED:0.10 QI:13|1|0.33|1|0.5|1|3|252|410; (*GB) gi|225439338|ref|XP_002268304.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100261548 [Vitis vinifera];; (*TAIR) AT5G06440.3 (e_value=2e-21) | Symbols: | BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr5:1964641-1966807 REVERSE LENGTH=479;; (*ITAG) Solyc01g006870.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:1430746-1436275 transcript_region:SL2.40ch01:1430746..1436275- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00022510g0010.1 protein AED:0.12 eAED:0.12 QI:80|1|0.83|1|1|0.83|6|0|263; (*GB) gi|225439356|ref|XP_002270858.1| (e_value=2e-83) PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial isoform 1 [Vitis vinifera];; (*SWP) sp|Q8IWL3|HSC20_HUMAN (e_value=7e-26) Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=HSCB PE=1 SV=3;; (*TAIR) AT5G06410.1 (e_value=2e-73) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:1959719-1961132 REVERSE LENGTH=252;; (*ITAG) Solyc01g006860.2.1 (e_value=1e-127) genomic_reference:SL2.40ch01 gene_region:1422780-1427208 transcript_region:SL2.40ch01:1422780..1427208- go_terms:GO:0006457,GO:0031072 functional_description:"Co-chaperone HscB-like protein (AHRD V1 ***- A8IK66_CHLRE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00004218g0101.1 protein AED:0.03 eAED:0.03 QI:105|1|1|1|1|1|5|362|217 NbS00004218g0104.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|147 NbS00042838g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|524; (*GB) gi|356513058|ref|XP_003525231.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At2g01680-like [Glycine max];; (*SWP) sp|Q9ZU96|Y2168_ARATH (e_value=0.0) Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1;; (*TAIR) AT2G01680.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:306597-308427 FORWARD LENGTH=532;; (*ITAG) Solyc01g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:241288-245649 transcript_region:SL2.40ch01:241288..245649- go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00007262g0003.1 protein AED:0.02 eAED:0.02 QI:369|0.75|0.8|1|0.75|0.6|5|176|447; (*GB) gi|225456957|ref|XP_002281747.1| (e_value=2e-169) PREDICTED: FAS-associated factor 2-B [Vitis vinifera];; (*SWP) sp|Q6GQ69|FAF2B_XENLA (e_value=4e-25) FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=2e-49) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc03g112630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57066301-57068725 transcript_region:SL2.40ch03:57066301..57068725+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 *--- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbC26066788g0004.1 protein AED:0.54 eAED:0.85 QI:0|0|0|0.66|0.5|0.66|3|0|88 NbS00059830g0003.1 protein AED:0.06 eAED:0.06 QI:211|1|1|1|1|1|6|235|467; (*GB) gi|158145827|gb|ABW22145.1| (e_value=0.0) putative At5g37260-like protein [Solanum peruvianum];; (*SWP) sp|Q6R0H1|LHY_ARATH (e_value=2e-28) Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2;; (*TAIR) AT5G17300.1 (e_value=1e-55) | Symbols: RVE1 | Homeodomain-like superfamily protein | chr5:5690435-5692435 REVERSE LENGTH=387;; (*ITAG) Solyc02g036370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21309276-21311945 transcript_region:SL2.40ch02:21309276..21311945- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR85_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00013656g0001.1 protein AED:0.02 eAED:0.02 QI:140|0.9|0.90|1|0.9|0.81|11|97|278; (*GB) gi|359484277|ref|XP_002278210.2| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera];; (*TAIR) AT5G09380.1 (e_value=2e-65) | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272;; (*ITAG) Solyc05g025650.2.1 (e_value=1e-99) genomic_reference:SL2.40ch05 gene_region:35397597-35400053 transcript_region:SL2.40ch05:35397597..35400053- go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 ***- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 "; GO:0005666 NbS00013656g0012.1 protein AED:0.04 eAED:0.04 QI:164|1|1|1|1|1|2|504|638; (*GB) gi|225444784|ref|XP_002278273.1| (e_value=0.0) PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis vinifera];; (*SWP) sp|Q6NY74|RFA1_DANRE (e_value=3e-106) Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1;; (*TAIR) AT2G06510.1 (e_value=0.0) | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replication protein A 1A | chr2:2585215-2587601 FORWARD LENGTH=640;; (*ITAG) Solyc05g025590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:34409125-34412154 transcript_region:SL2.40ch05:34409125..34412154+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 **** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0003697 NbS00013656g0002.1 protein AED:0.24 eAED:0.25 QI:184|0|0.5|1|0|0.5|2|0|100; (*GB) gi|217794200|gb|ACK56123.1| (e_value=5e-51) ELF4-like protein [Solanum tuberosum];; (*SWP) sp|Q8S8F5|EF4L3_ARATH (e_value=3e-43) Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=2 SV=1;; (*TAIR) AT2G06255.1 (e_value=3e-44) | Symbols: ELF4-L3 | ELF4-like 3 | chr2:2459336-2459665 FORWARD LENGTH=109;; (*ITAG) Solyc07g041340.1.1 (e_value=1e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:49758322-49758651 transcript_region:SL2.40ch07:49758322..49758651- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKI7_SOLTU); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00013656g0004.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|224068412|ref|XP_002326114.1| (e_value=5e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT2G06520.1 (e_value=1e-20) | Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116;; (*ITAG) Solyc05g025600.1.1 (e_value=2e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00021151g0008.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|465; (*GB) gi|255584220|ref|XP_002532848.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|P52409|E13B_WHEAT (e_value=3e-133) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT5G24318.2 (e_value=4e-154) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:8282390-8283956 REVERSE LENGTH=452;; (*ITAG) Solyc06g076170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43692634-43694457 transcript_region:SL2.40ch06:43692634..43694457- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00038171g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|759; (*GB) gi|225424122|ref|XP_002280156.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P0C7Q9|PPR56_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1;; (*TAIR) AT1G22960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8128086-8130242 REVERSE LENGTH=718;; (*ITAG) Solyc05g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2880075-2882339 transcript_region:SL2.40ch05:2880075..2882339+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038171g0003.1 protein AED:0.48 eAED:0.90 QI:0|0|0|1|0|0.5|2|0|91 NbS00047903g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|160; (*GB) gi|297727887|ref|NP_001176307.1| (e_value=5e-44) Os11g0109200 [Oryza sativa Japonica Group];; (*SWP) sp|Q9LXE5|DRM1_ARATH (e_value=6e-24) DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2;; (*TAIR) AT5G15380.1 (e_value=5e-25) | Symbols: DRM1 | domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624;; (*ITAG) Solyc02g062740.2.1 (e_value=2e-29) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00033554g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|78191466|gb|ABB29954.1| (e_value=2e-65) ribosomal protein PETRP-like [Solanum tuberosum];; (*SWP) sp|P51413|RL172_ARATH (e_value=4e-62) 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2;; (*TAIR) AT1G67430.1 (e_value=3e-63) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:25262209-25263627 FORWARD LENGTH=175;; (*ITAG) Solyc06g071870.2.1 (e_value=3e-67) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00004805g0012.1 protein AED:0.21 eAED:0.21 QI:107|1|1|1|0.9|0.81|11|434|461; (*GB) gi|225428918|ref|XP_002282614.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LT72|PUS4_ARATH (e_value=6e-157) RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1;; (*TAIR) AT3G19440.1 (e_value=5e-158) | Symbols: | Pseudouridine synthase family protein | chr3:6740778-6743132 FORWARD LENGTH=477;; (*ITAG) Solyc01g107580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86841410-86846306 transcript_region:SL2.40ch01:86841410..86846306+ go_terms:GO:0009451 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7L9Z2_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009451 NbS00004805g0013.1 protein AED:0.28 eAED:0.31 QI:210|0.71|0.87|1|0.28|0.37|8|341|235; (*GB) gi|359475413|ref|XP_002282581.2| (e_value=8e-128) PREDICTED: protein unc-50 homolog [Vitis vinifera];; (*SWP) sp|Q54DD7|UNC50_DICDI (e_value=1e-55) Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1;; (*TAIR) AT2G15240.1 (e_value=7e-109) | Symbols: | UNC-50 family protein | chr2:6615980-6618862 REVERSE LENGTH=252;; (*ITAG) Solyc01g107600.2.1 (e_value=3e-145) genomic_reference:SL2.40ch01 gene_region:86856338-86863612 transcript_region:SL2.40ch01:86856338..86863612- functional_description:"Unc-50 homolog (AHRD V1 ***- C1BXJ0_ESOLU); contains Interpro domain(s) IPR007881 UNC-50 "; NbS00029190g0002.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|6|396|964; (*GB) gi|255551935|ref|XP_002517012.1| (e_value=2e-153) hypothetical protein RCOM_0908960 [Ricinus communis];; (*TAIR) AT5G43630.1 (e_value=9e-80) | Symbols: TZP | zinc knuckle (CCHC-type) family protein | chr5:17527261-17530207 FORWARD LENGTH=831;; (*ITAG) Solyc09g083390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64430826-64435389 transcript_region:SL2.40ch09:64430826..64435389- go_terms:GO:0005634,GO:0008270 functional_description:"Genomic DNA chromosome 5 TAC clone K9D7 (AHRD V1 *-*- Q9FIX7_ARATH); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00029190g0011.1 protein AED:0.16 eAED:0.16 QI:153|1|1|1|0.66|0.57|7|899|225; (*GB) gi|297737172|emb|CBI26373.3| (e_value=2e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23090.1 (e_value=5e-23) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr3:8214533-8216983 REVERSE LENGTH=338;; (*ITAG) Solyc09g083400.2.1 (e_value=3e-112) genomic_reference:SL2.40ch09 gene_region:64451249-64453576 transcript_region:SL2.40ch09:64451249..64453576- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00044511g0004.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|1|3|155|211; (*GB) gi|350536235|ref|NP_001233980.1| (e_value=8e-82) p27KIP1-related-protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=3e-46) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=2e-47) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc09g091780.2.1 (e_value=2e-84) genomic_reference:SL2.40ch09 gene_region:66346096-66349096 transcript_region:SL2.40ch09:66346096..66349096- go_terms:GO:0030332 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 **** Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0030332 NbS00021009g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|356575540|ref|XP_003555898.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100815402 [Glycine max];; (*TAIR) AT1G13360.1 (e_value=2e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc06g069150.1.1 (e_value=2e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39319761-39320498 transcript_region:SL2.40ch06:39319761..39320498+ functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 *-*- Q9LUA5_ARATH)"; NbS00021009g0002.1 protein AED:0.23 eAED:0.23 QI:82|1|1|1|0.5|0.33|3|309|105; (*GB) gi|224118830|ref|XP_002317917.1| (e_value=9e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94C12|NDBAB_ARATH (e_value=5e-54) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1;; (*TAIR) AT3G18410.2 (e_value=4e-55) | Symbols: | Complex I subunit NDUFS6 | chr3:6323203-6323761 FORWARD LENGTH=106;; (*ITAG) Solyc12g036790.1.1 (e_value=1e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:32765403-32770909 transcript_region:SL2.40ch12:32765403..32770909- functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 *-*- C1GT14_PARBA)"; NbS00010710g0006.1 protein AED:0.02 eAED:0.09 QI:0|0|0|1|1|1|2|0|190; (*GB) gi|225430906|ref|XP_002276581.1| (e_value=7e-22) PREDICTED: UPF0510 protein INM02-like [Vitis vinifera];; (*TAIR) AT1G65270.1 (e_value=1e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:24241855-24244504 FORWARD LENGTH=292;; (*ITAG) Solyc04g047720.2.1 (e_value=1e-38) genomic_reference:SL2.40ch04 gene_region:35092083-35101575 transcript_region:SL2.40ch04:35092083..35101575+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010710g0007.1 protein AED:0.29 eAED:0.40 QI:34|0|0|1|0|0.5|2|0|23 NbS00031204g0005.1 protein AED:0.00 eAED:0.00 QI:67|1|1|1|1|1|3|157|154; (*GB) gi|147867253|emb|CAN81195.1| (e_value=1e-71) hypothetical protein VITISV_022854 [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=6e-60) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT3G61610.1 (e_value=3e-65) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:22799480-22801029 FORWARD LENGTH=317;; (*ITAG) Solyc01g095470.2.1 (e_value=7e-76) genomic_reference:SL2.40ch01 gene_region:78476591-78482443 transcript_region:SL2.40ch01:78476591..78482443+ go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein (AHRD V1 ***- D7LSC1_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0005975 NbS00013130g0011.1 protein AED:0.22 eAED:0.22 QI:7|0.6|0.5|0.66|0.4|0.5|6|0|169; (*GB) gi|359492513|ref|XP_002283694.2| (e_value=2e-49) PREDICTED: MADS-box transcription factor 27 [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=5e-39) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=9e-39) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc02g091550.1.1 (e_value=5e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00013130g0009.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|316890768|gb|ADU56830.1| (e_value=7e-32) MADS-box protein AGL17 subfamily [Coffea arabica];; (*SWP) sp|Q6Z6W2|MAD57_ORYSJ (e_value=5e-32) MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2;; (*TAIR) AT3G57230.2 (e_value=4e-31) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=239;; (*ITAG) Solyc02g091550.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00013130g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0.5|2|63|111; (*GB) gi|255572587|ref|XP_002527227.1| (e_value=4e-12) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g063380.1.1 (e_value=8e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:30047158-30047472 transcript_region:SL2.40ch02:30047158..30047472- functional_description:"Unknown Protein (AHRD V1)"; NbS00033686g0009.1 protein AED:0.12 eAED:0.12 QI:40|1|1|1|0.61|0.78|14|551|470; (*GB) gi|296089292|emb|CBI39064.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8SVJ8|NOG1_ENCCU (e_value=1e-33) Nucleolar GTP-binding protein 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=NOG1 PE=3 SV=1;; (*TAIR) AT1G80770.1 (e_value=0.0) | Symbols: PDE318 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30355266-30357786 FORWARD LENGTH=451;; (*ITAG) Solyc09g090460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65315562-65322903 transcript_region:SL2.40ch09:65315562..65322903+ go_terms:GO:0005525 functional_description:"GTPase obg (AHRD V1 *-*- OBG_ANATD); contains Interpro domain(s) IPR010674 Nucleolar GTP-binding 1 "; GO:0005525 NbS00033686g0006.1 protein AED:0.16 eAED:0.16 QI:197|1|1|1|1|1|15|214|623; (*GB) gi|225453246|ref|XP_002265511.1| (e_value=0.0) PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=0.0) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=0.0) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc10g062160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:55548053-55555105 transcript_region:SL2.40ch10:55548053..55555105- go_terms:GO:0003924 functional_description:"Dynamin like protein (AHRD V1 ***- D3BTL7_POLPA); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00043812g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0.33|0.5|4|0|285; (*GB) gi|350536181|ref|NP_001234745.1| (e_value=6e-86) mature anther-specific protein LAT61 [Solanum lycopersicum];; (*SWP) sp|Q94A43|BEH2_ARATH (e_value=6e-38) BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1;; (*TAIR) AT1G19350.6 (e_value=4e-35) | Symbols: BES1, BZR2 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:6688841-6690165 FORWARD LENGTH=335;; (*ITAG) Solyc12g089040.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62634158-62636323 transcript_region:SL2.40ch12:62634158..62636323+ go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00020856g0008.1 protein AED:0.06 eAED:0.11 QI:277|0.75|0.55|1|0.75|0.66|9|0|770; (*GB) gi|225432654|ref|XP_002278361.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase WNK1-like [Vitis vinifera];; (*SWP) sp|Q9CAV6|WNK1_ARATH (e_value=0.0) Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1;; (*TAIR) AT3G04910.1 (e_value=0.0) | Symbols: WNK1, ZIK4, ATWNK1 | with no lysine (K) kinase 1 | chr3:1355084-1358057 FORWARD LENGTH=700;; (*ITAG) Solyc09g076000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63183204-63186781 transcript_region:SL2.40ch09:63183204..63186781+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00020856g0007.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|334; (*GB) gi|47824946|gb|AAT38720.1| (e_value=4e-65) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=1e-19) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=1e-20) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc09g091710.1.1 (e_value=1e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00004431g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|314; (*GB) gi|225447472|ref|XP_002266988.1| (e_value=8e-144) PREDICTED: uncharacterized protein LOC100249414 [Vitis vinifera];; (*TAIR) AT2G04220.1 (e_value=1e-133) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc03g121220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63430340-63431673 transcript_region:SL2.40ch03:63430340..63431673+ functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00004431g0001.1 protein AED:0.10 eAED:0.10 QI:108|1|0.5|1|0|0|2|0|427; (*GB) gi|359482873|ref|XP_003632856.1| (e_value=7e-93) PREDICTED: transcription factor bHLH87-like [Vitis vinifera];; (*SWP) sp|Q8S3D2|BH087_ARATH (e_value=7e-60) Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1;; (*TAIR) AT3G21330.1 (e_value=5e-61) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7507720-7508841 FORWARD LENGTH=373;; (*ITAG) Solyc03g121240.1.1 (e_value=8e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63458470-63459612 transcript_region:SL2.40ch03:63458470..63459612- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *--* Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00005326g0007.1 protein AED:0.11 eAED:0.11 QI:229|0.54|0.25|0.91|0.63|0.58|12|0|886; (*GB) gi|225468648|ref|XP_002268069.1| (e_value=0.0) PREDICTED: lipase [Vitis vinifera];; (*SWP) sp|Q43729|PER57_ARATH (e_value=8e-71) Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1;; (*TAIR) AT1G10740.4 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3568343-3570466 REVERSE LENGTH=473;; (*ITAG) Solyc01g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2134714-2143061 transcript_region:SL2.40ch01:2134714..2143061- go_terms:GO:0055114 functional_description:"Peroxidase 1 (AHRD V1 *-*- B6T173_MAIZE); contains Interpro domain(s) IPR000823 Plant peroxidase "; GO:0055114 NbS00005326g0011.1 protein AED:0.17 eAED:0.20 QI:0|0.8|0.63|1|0.8|0.72|11|0|340; (*GB) gi|255574001|ref|XP_002527918.1| (e_value=0.0) alanine aminotransferase, putative [Ricinus communis];; (*SWP) sp|Q9S7E9|GGT2_ARATH (e_value=0.0) Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1;; (*TAIR) AT1G70580.4 (e_value=0.0) | Symbols: AOAT2, GGT2 | alanine-2-oxoglutarate aminotransferase 2 | chr1:26613222-26615845 FORWARD LENGTH=481;; (*ITAG) Solyc01g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2123045-2128114 transcript_region:SL2.40ch01:2123045..2128114- go_terms:GO:0004021 functional_description:"Alanine aminotransferase 2 (AHRD V1 **** A8IKE5_SOYBN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004021 NbS00042854g0003.1 protein AED:0.18 eAED:0.18 QI:12|1|0.66|1|1|1|6|0|395; (*GB) gi|255584865|ref|XP_002533148.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q06548|APK1A_ARATH (e_value=0.0) Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1;; (*TAIR) AT1G07570.1 (e_value=0.0) | Symbols: APK1A, APK1 | Protein kinase superfamily protein | chr1:2331369-2333210 REVERSE LENGTH=410;; (*ITAG) Solyc04g011520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3956690-3961315 transcript_region:SL2.40ch04:3956690..3961315+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00018468g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|544; (*GB) gi|225460143|ref|XP_002275945.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Vitis vinifera];; (*SWP) sp|Q9C9I6|PP116_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1;; (*TAIR) AT1G71490.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26933326-26935371 REVERSE LENGTH=681;; (*ITAG) Solyc09g082400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00018468g0006.1 protein AED:0.28 eAED:0.29 QI:0|1|0.33|1|1|1|3|0|231; (*GB) gi|255545214|ref|XP_002513668.1| (e_value=4e-130) ribosomal protein S9, putative [Ricinus communis];; (*SWP) sp|A9IVX6|RS9_BART1 (e_value=4e-51) 30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1;; (*TAIR) AT3G49080.1 (e_value=4e-118) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:18194500-18196657 REVERSE LENGTH=430;; (*ITAG) Solyc10g080160.1.1 (e_value=2e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60857981-60862695 transcript_region:SL2.40ch10:60857981..60862695- go_terms:GO:0005840 functional_description:"30S ribosomal protein S9-like (AHRD V1 *-*- Q9SMU5_ARATH); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0005840 NbS00059754g0003.1 protein AED:0.11 eAED:0.13 QI:45|0.66|0.75|1|0.66|0.5|4|109|897; (*GB) gi|359481308|ref|XP_002269679.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265434 [Vitis vinifera];; (*TAIR) AT3G51640.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51650.1); Has 26208 Blast hits to 14155 proteins in 1229 species: Archae - 43; Bacteria - 3230; Metazoa - 9456; Fungi - 2551; Plants - 1160; Viruses - 177; Other Eukaryotes - 9591 (source: NCBI BLink). | chr3:19154294-19157134 FORWARD LENGTH=842;; (*ITAG) Solyc09g018310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14422207-14431899 transcript_region:SL2.40ch09:14422207..14431899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047808g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|221|630; (*GB) gi|359476777|ref|XP_002278837.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=2e-108) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=1e-109) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g063160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:30760612-30762462 transcript_region:SL2.40ch03:30760612..30762462- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00047808g0015.1 protein AED:0.26 eAED:0.26 QI:14|0.87|0.77|1|0.87|1|9|18|280; (*GB) gi|297735283|emb|CBI17645.3| (e_value=8e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93Y38|GDT13_ARATH (e_value=9e-97) GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1;; (*TAIR) AT5G36290.2 (e_value=7e-98) | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302977-14304972 FORWARD LENGTH=293;; (*ITAG) Solyc11g008890.1.1 (e_value=2e-118) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3059196-3063574 transcript_region:SL2.40ch11:3059196..3063574- go_terms:GO:0016020 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0016020 NbS00047808g0017.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|0.5|0.33|3|168|673; (*GB) gi|356540081|ref|XP_003538519.1| (e_value=2e-179) PREDICTED: L-ascorbate oxidase homolog [Glycine max];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=4e-166) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=3e-168) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc03g063150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:30757050-30759159 transcript_region:SL2.40ch03:30757050..30759159+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00029615g0003.1 protein AED:0.09 eAED:0.09 QI:298|1|0.75|1|1|1|4|0|269; (*GB) gi|255547363|ref|XP_002514739.1| (e_value=6e-105) Thioredoxin II, putative [Ricinus communis];; (*SWP) sp|Q10M18|TRL12_ORYSJ (e_value=5e-82) Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1;; (*TAIR) AT5G61440.1 (e_value=3e-82) | Symbols: ACHT5 | atypical CYS HIS rich thioredoxin 5 | chr5:24707658-24708684 FORWARD LENGTH=245;; (*ITAG) Solyc03g115870.2.1 (e_value=3e-143) genomic_reference:SL2.40ch03 gene_region:59525085-59526646 transcript_region:SL2.40ch03:59525085..59526646+ go_terms:GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00043367g0004.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|175; (*GB) gi|225453068|ref|XP_002268613.1| (e_value=6e-66) PREDICTED: uncharacterized protein LOC100258732 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=6e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc03g034410.1.1 (e_value=3e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10645044-10645559 transcript_region:SL2.40ch03:10645044..10645559+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 ***- B7FA06_ORYSJ)"; NbS00043367g0005.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|0|0|2|0|89; (*GB) gi|57013928|ref|YP_173401.1| (e_value=6e-16) hypothetical protein NitaMp055 [Nicotiana tabacum];; (*ITAG) Solyc00g023600.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12145018-12145284 transcript_region:SL2.40ch00:12145018..12145284+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027962g0016.1 protein AED:0.19 eAED:0.20 QI:0|0.5|0.2|0.8|0.75|0.6|5|0|399; (*GB) gi|225449106|ref|XP_002276752.1| (e_value=1e-127) PREDICTED: uncharacterized protein LOC100259846 [Vitis vinifera];; (*TAIR) AT5G45410.3 (e_value=1e-111) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18402071-18403282 REVERSE LENGTH=342;; (*ITAG) Solyc08g075860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00027962g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|1|1|3|0|102; (*ITAG) Solyc01g111490.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00027962g0017.1 protein AED:0.12 eAED:0.20 QI:0|0|0|1|0|0.16|6|0|298; (*ITAG) Solyc03g122200.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00027962g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|140 NbS00051496g0002.1 protein AED:0.07 eAED:0.11 QI:59|1|0|1|0|0|2|0|204; (*GB) gi|255554579|ref|XP_002518328.1| (e_value=2e-84) Oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|O04514|OPT2_ARATH (e_value=1e-85) Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2;; (*TAIR) AT1G09930.1 (e_value=8e-87) | Symbols: ATOPT2, OPT2 | oligopeptide transporter 2 | chr1:3227490-3230043 REVERSE LENGTH=734;; (*ITAG) Solyc04g076760.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59239550-59242872 transcript_region:SL2.40ch04:59239550..59242872+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00014914g0013.1 protein AED:0.01 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|419; (*GB) gi|255547824|ref|XP_002514969.1| (e_value=3e-121) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G67660.2 (e_value=4e-101) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:25364152-25365069 FORWARD LENGTH=305;; (*ITAG) Solyc10g081050.1.1 (e_value=4e-163) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00014914g0017.1 protein AED:0.10 eAED:0.11 QI:0|0.90|0.83|1|0.81|0.83|12|760|340; (*GB) gi|296086047|emb|CBI31488.3| (e_value=3e-166) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5M721|PUS5_ARATH (e_value=4e-151) RNA pseudourine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2;; (*TAIR) AT3G52260.2 (e_value=3e-152) | Symbols: | Pseudouridine synthase family protein | chr3:19383452-19386440 REVERSE LENGTH=369;; (*ITAG) Solyc02g062520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28782992-28794373 transcript_region:SL2.40ch02:28782992..28794373- go_terms:GO:0009451 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7LU41_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451 NbS00014914g0019.1 protein AED:0.09 eAED:0.14 QI:0|0.6|0.66|1|0.6|0.83|6|76|289; (*GB) gi|225449108|ref|XP_002274802.1| (e_value=5e-105) PREDICTED: general transcription factor IIF subunit 2 [Vitis vinifera];; (*SWP) sp|O94424|T2FB_SCHPO (e_value=3e-14) Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1;; (*TAIR) AT3G52270.1 (e_value=2e-91) | Symbols: | Transcription initiation factor IIF, beta subunit | chr3:19387180-19388902 REVERSE LENGTH=269;; (*ITAG) Solyc10g054400.1.1 (e_value=2e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50747331-50748161 transcript_region:SL2.40ch10:50747331..50748161- go_terms:GO:0005674,GO:0006367 functional_description:"General transcription factor IIF subunit 2 (AHRD V1 ***- T2FB_DROME); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit "; GO:0005674,GO:0006367 NbS00014914g0006.1 protein AED:0.29 eAED:0.29 QI:0|1|0.33|1|1|1|3|0|346; (*GB) gi|255587523|ref|XP_002534301.1| (e_value=7e-157) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25030.2 (e_value=4e-133) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344;; (*ITAG) Solyc08g075860.2.1 (e_value=5e-132) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00014914g0022.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|420; (*GB) gi|359481508|ref|XP_002274877.2| (e_value=4e-136) PREDICTED: uncharacterized protein LOC100251629 [Vitis vinifera];; (*TAIR) AT5G13660.1 (e_value=2e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4405094-4406983 FORWARD LENGTH=536;; (*ITAG) Solyc09g010350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00050119g0011.1 protein AED:0.16 eAED:0.16 QI:70|1|1|1|0.37|0.55|9|550|307; (*GB) gi|225442154|ref|XP_002274144.1| (e_value=2e-133) PREDICTED: uncharacterized protein LOC100246327 [Vitis vinifera];; (*TAIR) AT1G72640.2 (e_value=6e-109) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:27346409-27348147 REVERSE LENGTH=311;; (*ITAG) Solyc12g049280.1.1 (e_value=1e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46219597-46223245 transcript_region:SL2.40ch12:46219597..46223245+ go_terms:GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- Q3MEG2_ANAVT); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00050119g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.33|0.25|4|0|363; (*GB) gi|147843201|emb|CAN78441.1| (e_value=5e-30) hypothetical protein VITISV_023669 [Vitis vinifera];; (*ITAG) Solyc10g049530.1.1 (e_value=8e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00025795g0006.1 protein AED:0.04 eAED:0.04 QI:96|1|1|1|0.75|0.6|5|439|355; (*GB) gi|147818973|emb|CAN67117.1| (e_value=5e-52) hypothetical protein VITISV_026466 [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=2e-40) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=1e-41) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091820.1.1 (e_value=1e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47620024-47621666 transcript_region:SL2.40ch02:47620024..47621666+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 ***- Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00025795g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.77|1|1|1|9|234|492; (*GB) gi|224094993|ref|XP_002310319.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T071|HXKL2_ARATH (e_value=2e-165) Probable hexokinase-like 2 protein OS=Arabidopsis thaliana GN=At4g37840 PE=2 SV=1;; (*TAIR) AT4G37840.1 (e_value=1e-166) | Symbols: HKL3 | hexokinase-like 3 | chr4:17790147-17792198 REVERSE LENGTH=493;; (*ITAG) Solyc02g091830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47638491-47642246 transcript_region:SL2.40ch02:47638491..47642246+ go_terms:GO:0008865,GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FVD3_CITSI); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0008865,GO:0004340 NbS00009181g0016.1 protein AED:0.12 eAED:0.12 QI:59|0.5|0.66|0.66|1|1|3|0|89; (*GB) gi|255540055|ref|XP_002511092.1| (e_value=9e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G50930.1 (e_value=1e-18) | Symbols: | Histone superfamily protein | chr5:20722069-20724317 FORWARD LENGTH=242;; (*ITAG) Solyc07g054400.1.1 (e_value=4e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60051104-60051544 transcript_region:SL2.40ch07:60051104..60051544+ go_terms:GO:0003677 functional_description:"Centromere protein S (AHRD V1 *-*- CENPS_HUMAN); contains Interpro domain(s) IPR009072 Histone-fold "; GO:0003677 NbS00009181g0017.1 protein AED:0.18 eAED:0.26 QI:0|0.25|0.2|1|0.5|0.6|5|0|443; (*GB) gi|317106617|dbj|BAJ53124.1| (e_value=6e-67) JHL07K02.14 [Jatropha curcas];; (*TAIR) AT5G61865.1 (e_value=5e-57) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24847395-24849706 FORWARD LENGTH=417;; (*ITAG) Solyc12g042340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:42923683-42926664 transcript_region:SL2.40ch12:42923683..42926664- functional_description:"Genomic DNA chromosome 5 P1 clone MAC9 (AHRD V1 ***- Q9FLS4_ARATH)"; NbS00042051g0003.1 protein AED:0.08 eAED:0.08 QI:188|1|1|1|1|1|2|216|350; (*GB) gi|1620972|emb|CAA70101.1| (e_value=0.0) L-lactate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|P22989|LDHB_HORVU (e_value=1e-162) L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1;; (*TAIR) AT4G17260.1 (e_value=0.0) | Symbols: | Lactate/malate dehydrogenase family protein | chr4:9674057-9675309 FORWARD LENGTH=353;; (*ITAG) Solyc08g007420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1979675-1983199 transcript_region:SL2.40ch08:1979675..1983199+ go_terms:GO:0004459 functional_description:"L-lactate dehydrogenase (AHRD V1 **** Q96570_SOLLC); contains Interpro domain(s) IPR011304 L-lactate dehydrogenase "; GO:0004459 NbS00030861g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|147; (*GB) gi|388520287|gb|AFK48205.1| (e_value=3e-45) unknown [Medicago truncatula];; (*SWP) sp|Q2V0W1|PPD_RAPSA (e_value=6e-22) Pheophorbidase OS=Raphanus sativus GN=PPD PE=1 SV=1;; (*TAIR) AT3G10870.1 (e_value=1e-37) | Symbols: MES17, ATMES17 | methyl esterase 17 | chr3:3401228-3402612 REVERSE LENGTH=276;; (*ITAG) Solyc06g048570.2.1 (e_value=2e-52) genomic_reference:SL2.40ch06 gene_region:27750020-27752571 transcript_region:SL2.40ch06:27750020..27752571- go_terms:GO:0080030,GO:0080032 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-- Q2QYJ1_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080030,GO:0080032 NbS00035213g0007.1 protein AED:0.06 eAED:0.06 QI:76|1|0.75|1|0.66|0.5|4|0|308; (*GB) gi|296084921|emb|CBI28330.3| (e_value=3e-123) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=2e-115) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009480.2.1 (e_value=2e-159) genomic_reference:SL2.40ch01 gene_region:3702854-3706348 transcript_region:SL2.40ch01:3702854..3706348- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00035213g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|432; (*GB) gi|19743740|gb|AAL92461.1| (e_value=7e-137) putative glucosyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=2e-125) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.3 (e_value=2e-53) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc10g079930.1.1 (e_value=2e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60702629-60703942 transcript_region:SL2.40ch10:60702629..60703942- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00025967g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|76160935|gb|ABA40431.1| (e_value=2e-43) unknown [Solanum tuberosum];; (*TAIR) AT5G11090.1 (e_value=1e-22) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc07g007330.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbC25736581g0001.1 protein AED:0.22 eAED:0.46 QI:0|0|0|1|0|0|3|0|267; (*GB) gi|356523201|ref|XP_003530230.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100778734 [Glycine max];; (*TAIR) AT3G09110.1 (e_value=6e-18) | Symbols: | Protein of unknown function (DUF674) | chr3:2794850-2795963 REVERSE LENGTH=343;; (*ITAG) Solyc09g011910.2.1 (e_value=5e-27) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbC25736581g0002.1 protein AED:0.42 eAED:0.58 QI:0|0|0|1|0|0|3|0|72 NbS00017046g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.6|1|0.5|0.4|5|371|573; (*GB) gi|225446551|ref|XP_002276195.1| (e_value=2e-165) PREDICTED: transcription factor GTE4-like [Vitis vinifera];; (*SWP) sp|Q9LNC4|GTE4_ARATH (e_value=7e-122) Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1;; (*TAIR) AT1G06230.3 (e_value=5e-123) | Symbols: GTE4 | global transcription factor group E4 | chr1:1907626-1910183 FORWARD LENGTH=766;; (*ITAG) Solyc07g062660.2.1 (e_value=3e-127) genomic_reference:SL2.40ch07 gene_region:62565737-62571287 transcript_region:SL2.40ch07:62565737..62571287- go_terms:GO:0004674 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0004674 NbS00057000g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|289; (*GB) gi|359476188|ref|XP_002283446.2| (e_value=3e-118) PREDICTED: putative pentatricopeptide repeat-containing protein At3g25970-like [Vitis vinifera];; (*SWP) sp|Q9LU94|PP255_ARATH (e_value=3e-98) Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2;; (*TAIR) AT3G25970.1 (e_value=3e-99) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=701;; (*ITAG) Solyc01g090510.2.1 (e_value=3e-166) genomic_reference:SL2.40ch01 gene_region:75938110-75940247 transcript_region:SL2.40ch01:75938110..75940247+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00057000g0005.1 protein AED:0.41 eAED:0.63 QI:0|0|0|1|1|1|3|0|129; (*GB) gi|224095278|ref|XP_002310370.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LU94|PP255_ARATH (e_value=5e-16) Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2;; (*TAIR) AT3G25970.1 (e_value=4e-17) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=701;; (*ITAG) Solyc01g090510.2.1 (e_value=3e-42) genomic_reference:SL2.40ch01 gene_region:75938110-75940247 transcript_region:SL2.40ch01:75938110..75940247+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017704g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.5|1|0.8|1|6|76|203; (*GB) gi|225449108|ref|XP_002274802.1| (e_value=3e-99) PREDICTED: general transcription factor IIF subunit 2 [Vitis vinifera];; (*SWP) sp|Q8R0A0|T2FB_MOUSE (e_value=7e-17) General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1;; (*TAIR) AT3G52270.1 (e_value=3e-86) | Symbols: | Transcription initiation factor IIF, beta subunit | chr3:19387180-19388902 REVERSE LENGTH=269;; (*ITAG) Solyc10g054400.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50747331-50748161 transcript_region:SL2.40ch10:50747331..50748161- go_terms:GO:0005674,GO:0006367 functional_description:"General transcription factor IIF subunit 2 (AHRD V1 ***- T2FB_DROME); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit "; GO:0005674,GO:0006367 NbS00017704g0008.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|141; (*GB) gi|1710401|sp|P49730.1|RIR2_TOBAC (e_value=2e-37) RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit;; (*SWP) sp|P49730|RIR2_TOBAC (e_value=5e-39) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G27060.1 (e_value=2e-30) | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332;; (*ITAG) Solyc02g094160.1.1 (e_value=6e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:49359009-49359998 transcript_region:SL2.40ch02:49359009..49359998+ go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00022242g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|1|0.25|0.2|5|223|122; (*GB) gi|2497902|sp|Q40410.1|MT2_NICPL (e_value=3e-26) RecName: Full=Metallothionein-like protein type 2;; (*SWP) sp|Q40410|MT2_NICPL (e_value=8e-28) Metallothionein-like protein type 2 OS=Nicotiana plumbaginifolia PE=3 SV=1;; (*ITAG) Solyc06g076140.2.1 (e_value=5e-22) genomic_reference:SL2.40ch06 gene_region:43665663-43666838 transcript_region:SL2.40ch06:43665663..43666838+ go_terms:GO:0005507 functional_description:"Metallothionein-like protein (AHRD V1 ***- A9YTZ3_SOLTU); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0005507 NbS00028297g0016.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|307; (*GB) gi|3341468|emb|CAA08755.1| (e_value=7e-154) Dof zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q8LAP8|DOF46_ARATH (e_value=4e-38) Dof zinc finger protein DOF4.6 OS=Arabidopsis thaliana GN=DOF4.6 PE=2 SV=2;; (*TAIR) AT4G24060.1 (e_value=3e-39) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr4:12503970-12505417 FORWARD LENGTH=342;; (*ITAG) Solyc03g082840.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:46231932-46233258 transcript_region:SL2.40ch03:46231932..46233258- go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 *-*- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00028297g0008.1 protein AED:0.15 eAED:0.18 QI:0|0.57|0.62|1|0.85|0.75|8|2824|379; (*GB) gi|55956221|emb|CAG26906.1| (e_value=0.0) impaired sucrose induction 1-like protein [Solanum tuberosum];; (*TAIR) AT4G27750.1 (e_value=6e-145) | Symbols: ISI1 | binding | chr4:13841708-13843501 FORWARD LENGTH=305;; (*ITAG) Solyc03g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46220340-46223630 transcript_region:SL2.40ch03:46220340..46223630+ go_terms:GO:0005488 functional_description:"Impaired sucrose induction 1-like protein (AHRD V1 ***- Q5TJC6_SOLTU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00028297g0009.1 protein AED:0.28 eAED:0.28 QI:0|0|0.33|1|0.5|0|3|0|244; (*GB) gi|88659654|gb|ABD47725.1| (e_value=2e-26) peroxidase [Eucalyptus globulus subsp. globulus];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=9e-25) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=7e-26) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc01g108350.2.1 (e_value=4e-43) genomic_reference:SL2.40ch01 gene_region:87454424-87455286 transcript_region:SL2.40ch01:87454424..87455286+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00020633g0005.1 protein AED:0.27 eAED:0.27 QI:1014|1|0.91|1|0.18|0.33|12|264|258; (*GB) gi|359480111|ref|XP_003632402.1| (e_value=1e-122) PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Vitis vinifera];; (*SWP) sp|Q54C64|PIGL_DICDI (e_value=2e-45) Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Dictyostelium discoideum GN=pigl PE=3 SV=1;; (*TAIR) AT3G58130.2 (e_value=7e-114) | Symbols: | N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein | chr3:21527946-21529654 FORWARD LENGTH=257;; (*ITAG) Solyc08g074360.2.1 (e_value=1e-165) genomic_reference:SL2.40ch08 gene_region:55645966-55651984 transcript_region:SL2.40ch08:55645966..55651984- go_terms:GO:0000225 functional_description:"N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (AHRD V1 ***- B6TKR0_MAIZE); contains Interpro domain(s) IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase "; GO:0000225 NbS00058924g0003.1 protein AED:0.37 eAED:0.65 QI:122|0.5|0.33|1|0|0|3|0|73 NbS00003685g0001.1 protein AED:0.46 eAED:0.52 QI:0|0|0|1|1|1|2|0|61 NbS00013248g0018.1 protein AED:0.14 eAED:0.14 QI:225|0.75|0.66|1|0.5|0.66|9|553|332; (*GB) gi|255568442|ref|XP_002525195.1| (e_value=3e-118) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q0JHZ2|C3H11_ORYSJ (e_value=1e-109) Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2;; (*TAIR) AT2G20280.1 (e_value=2e-96) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:8740054-8742349 REVERSE LENGTH=371;; (*ITAG) Solyc09g007230.2.1 (e_value=5e-155) genomic_reference:SL2.40ch09 gene_region:832874-838682 transcript_region:SL2.40ch09:832874..838682+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 15 (AHRD V1 *-*- B9ELB3_SALSA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00013248g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|225439757|ref|XP_002274790.1| (e_value=0.0) PREDICTED: DNA topoisomerase 6 subunit A-like [Vitis vinifera];; (*SWP) sp|Q9LZ03|TOP6A_ARATH (e_value=0.0) DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1;; (*TAIR) AT5G02820.1 (e_value=0.0) | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, subunit A protein | chr5:642658-644123 FORWARD LENGTH=427;; (*ITAG) Solyc09g007210.2.1 (e_value=2e-131) genomic_reference:SL2.40ch09 gene_region:827489-828966 transcript_region:SL2.40ch09:827489..828966- go_terms:GO:0042802,GO:0003918 functional_description:"DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** D6GWL5_9EURY); contains Interpro domain(s) IPR004085 DNA topoisomerase VI, subunit A "; GO:0042802,GO:0003918 NbS00013248g0013.1 protein AED:0.27 eAED:0.36 QI:0|0.87|0.88|1|1|1|9|189|232; (*GB) gi|388514001|gb|AFK45062.1| (e_value=1e-116) unknown [Lotus japonicus];; (*SWP) sp|Q9ZUU2|U308_ARATH (e_value=1e-100) UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2;; (*TAIR) AT2G37240.1 (e_value=1e-101) | Symbols: | Thioredoxin superfamily protein | chr2:15640235-15641720 REVERSE LENGTH=248;; (*ITAG) Solyc09g007190.2.1 (e_value=5e-139) genomic_reference:SL2.40ch09 gene_region:807028-812659 transcript_region:SL2.40ch09:807028..812659+ functional_description:"C1orf93 homolog (AHRD V1 **-- B5X9L9_SALSA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00013248g0016.1 protein AED:0.25 eAED:0.27 QI:0|0.83|0.69|1|1|1|13|0|878; (*GB) gi|225439759|ref|XP_002273255.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8GYL7|PP361_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3;; (*TAIR) AT5G02830.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:644458-648421 REVERSE LENGTH=852;; (*ITAG) Solyc09g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:817262-827184 transcript_region:SL2.40ch09:817262..827184+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041737g0007.1 protein AED:0.25 eAED:0.25 QI:142|1|1|1|0.77|0.6|10|229|293; (*GB) gi|225440392|ref|XP_002267559.1| (e_value=9e-169) PREDICTED: uncharacterized protein LOC100232886 [Vitis vinifera];; (*SWP) sp|Q09893|YAI5_SCHPO (e_value=1e-16) Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=2 SV=1;; (*TAIR) AT5G02230.2 (e_value=3e-137) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:449132-450507 FORWARD LENGTH=280;; (*ITAG) Solyc09g010940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4278272-4282087 transcript_region:SL2.40ch09:4278272..4282087- go_terms:GO:0016787,GO:0008152 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 ***- D5QKK7_METTR); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0016787,GO:0008152 NbS00041737g0006.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|70; (*ITAG) Solyc09g059680.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00057238g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.77|0.6|0.9|0.88|0.8|10|0|848; (*GB) gi|8885992|gb|AAF80332.1|AF157047_1 (e_value=0.0) putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica];; (*SWP) sp|Q8L796|PI5K2_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 2 OS=Arabidopsis thaliana GN=PIP5K2 PE=1 SV=2;; (*TAIR) AT1G77740.1 (e_value=0.0) | Symbols: PIP5K2 | phosphatidylinositol-4-phosphate 5-kinase 2 | chr1:29220632-29223861 FORWARD LENGTH=754;; (*ITAG) Solyc11g013180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6063092-6066929 transcript_region:SL2.40ch11:6063092..6066929- go_terms:GO:0046488,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0046488,GO:0016308 NbS00028426g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|350539962|ref|NP_001234848.1| (e_value=7e-56) ethylene response factor 1 [Solanum lycopersicum];; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=9e-32) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1;; (*TAIR) AT5G25190.1 (e_value=7e-33) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:8707007-8707655 REVERSE LENGTH=181;; (*ITAG) Solyc06g065820.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:37639581-37641049 transcript_region:SL2.40ch06:37639581..37641049- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00034261g0014.1 protein AED:0.09 eAED:0.09 QI:316|1|1|1|0.66|0.5|4|197|166; (*GB) gi|224131752|ref|XP_002321169.1| (e_value=5e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04790.2 (e_value=2e-54) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:1679528-1680327 FORWARD LENGTH=164;; (*ITAG) Solyc05g041430.2.1 (e_value=4e-92) genomic_reference:SL2.40ch05 gene_region:50848963-50851647 transcript_region:SL2.40ch05:50848963..50851647+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034261g0013.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0|1|0|0.33|3|0|235; (*GB) gi|359485884|ref|XP_002270768.2| (e_value=7e-107) PREDICTED: probable serine/threonine-protein kinase WNK11-like [Vitis vinifera];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=9e-106) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=6e-107) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc05g041420.2.1 (e_value=6e-129) genomic_reference:SL2.40ch05 gene_region:50821713-50825381 transcript_region:SL2.40ch05:50821713..50825381+ go_terms:GO:0019903 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019903 NbS00034261g0009.1 protein AED:0.05 eAED:0.05 QI:71|1|1|1|0.8|0.66|6|325|256; (*GB) gi|225452175|ref|XP_002264926.1| (e_value=2e-113) PREDICTED: thymidylate kinase [Vitis vinifera];; (*SWP) sp|P23919|KTHY_HUMAN (e_value=1e-55) Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4;; (*TAIR) AT5G59440.1 (e_value=3e-101) | Symbols: ZEU1, ATTMPK.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23971533-23972729 FORWARD LENGTH=263;; (*ITAG) Solyc07g048010.2.1 (e_value=3e-146) genomic_reference:SL2.40ch07 gene_region:56531812-56536127 transcript_region:SL2.40ch07:56531812..56536127- go_terms:GO:0004798 functional_description:"Thymidylate kinase family protein (AHRD V1 **** D7MSE9_ARALY); contains Interpro domain(s) IPR000062 Thymidylate kinase-like "; GO:0004798 NbS00029386g0011.1 protein AED:0.05 eAED:0.05 QI:176|1|1|1|1|1|6|362|292; (*GB) gi|224103823|ref|XP_002313207.1| (e_value=1e-173) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXC9|IPYR1_ARATH (e_value=2e-162) Soluble inorganic pyrophosphatase 1, chloroplastic OS=Arabidopsis thaliana GN=PPA1 PE=1 SV=1;; (*TAIR) AT5G09650.1 (e_value=1e-163) | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr5:2991331-2993117 REVERSE LENGTH=300;; (*ITAG) Solyc10g047950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:38620947-38627409 transcript_region:SL2.40ch10:38620947..38627409- go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase family protein (AHRD V1 **** D7M262_ARALY); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00029386g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|255537537|ref|XP_002509835.1| (e_value=1e-107) rad25/xp-B DNA repair helicase, putative [Ricinus communis];; (*SWP) sp|Q38861|XPB1_ARATH (e_value=7e-106) DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3;; (*TAIR) AT5G41370.1 (e_value=5e-107) | Symbols: XPB1, ATXPB1 | homolog of xeroderma pigmentosum complementation group B 1 | chr5:16551337-16555792 FORWARD LENGTH=767;; (*ITAG) Solyc08g081340.2.1 (e_value=1e-106) genomic_reference:SL2.40ch08 gene_region:61564279-61573863 transcript_region:SL2.40ch08:61564279..61573863+ go_terms:GO:0043140 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** C8NNJ3_COREF); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B) "; GO:0043140 NbS00029386g0010.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|1|1|2|0|224; (*GB) gi|297805512|ref|XP_002870640.1| (e_value=2e-134) DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FUG4|XPB2_ARATH (e_value=3e-135) DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1;; (*TAIR) AT5G41360.1 (e_value=2e-136) | Symbols: XPB2, ATXPB2 | homolog of Xeroderma pigmentosum complementation group B 2 | chr5:16544574-16549121 FORWARD LENGTH=766;; (*ITAG) Solyc08g081340.2.1 (e_value=2e-136) genomic_reference:SL2.40ch08 gene_region:61564279-61573863 transcript_region:SL2.40ch08:61564279..61573863+ go_terms:GO:0043140 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** C8NNJ3_COREF); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B) "; GO:0043140 NbS00029386g0012.1 protein AED:0.20 eAED:0.20 QI:181|1|1|1|1|1|3|285|201; (*GB) gi|156105710|gb|ABU49226.1| (e_value=1e-140) chloroplast methionine sulfoxide reductase B2 precursor [Nicotiana tabacum];; (*SWP) sp|Q9C5C8|MSRB2_ARATH (e_value=1e-87) Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1;; (*TAIR) AT4G21860.3 (e_value=1e-88) | Symbols: MSRB2 | methionine sulfoxide reductase B 2 | chr4:11600238-11601507 REVERSE LENGTH=202;; (*ITAG) Solyc10g047930.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:38589624-38594602 transcript_region:SL2.40ch10:38589624..38594602+ go_terms:GO:0033743,GO:0000318 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 **** B6T2C6_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0033743,GO:0000318 NbS00015552g0013.1 protein AED:0.12 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|221; (*GB) gi|225454876|ref|XP_002278704.1| (e_value=9e-83) PREDICTED: uncharacterized protein LOC100247606 [Vitis vinifera];; (*TAIR) AT2G44870.1 (e_value=3e-69) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18503250-18504422 FORWARD LENGTH=248;; (*ITAG) Solyc07g005550.2.1 (e_value=8e-102) genomic_reference:SL2.40ch07 gene_region:441083-444862 transcript_region:SL2.40ch07:441083..444862- functional_description:"Unknown Protein (AHRD V1)"; NbS00015552g0009.1 protein AED:0.23 eAED:0.25 QI:247|0.69|0.71|0.92|0.69|0.57|14|660|608; (*GB) gi|356565521|ref|XP_003550988.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2-like [Glycine max];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-19) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G43100.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631;; (*ITAG) Solyc10g044740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23139489-23149227 transcript_region:SL2.40ch10:23139489..23149227+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00010352g0013.1 protein AED:0.21 eAED:0.21 QI:83|1|0|1|0|0|2|10|40 NbS00010352g0009.1 protein AED:0.23 eAED:0.23 QI:214|0.83|0.85|1|1|0.85|7|718|318; (*GB) gi|374250709|gb|AEY99977.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q39016|CDPKB_ARATH (e_value=4e-176) Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2;; (*TAIR) AT1G35670.1 (e_value=3e-177) | Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 | calcium-dependent protein kinase 2 | chr1:13205456-13208058 FORWARD LENGTH=495;; (*ITAG) Solyc11g018610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8769972-8773835 transcript_region:SL2.40ch11:8769972..8773835+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- D7LXA9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00010352g0005.1 protein AED:0.24 eAED:0.50 QI:0|0|0|0.5|1|1|6|0|231 NbS00010352g0017.1 protein AED:0.17 eAED:0.17 QI:404|0.66|0.75|1|0.66|0.75|4|616|263; (*GB) gi|30681121|ref|NP_192696.3| (e_value=5e-123) SNARE associated Golgi protein [Arabidopsis thaliana];; (*SWP) sp|Q8L586|Y4958_ARATH (e_value=2e-124) Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1;; (*TAIR) AT4G09580.1 (e_value=1e-125) | Symbols: | SNARE associated Golgi protein family | chr4:6052721-6054313 REVERSE LENGTH=287;; (*ITAG) Solyc11g018620.1.1 (e_value=2e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8774648-8778289 transcript_region:SL2.40ch11:8774648..8778289- functional_description:"Transmembrane protein 41B (AHRD V1 **-- TM41B_XENLA); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00002247g0007.1 protein AED:0.27 eAED:0.27 QI:155|0.85|0.87|1|0.71|0.75|8|242|346; (*GB) gi|224129412|ref|XP_002320580.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64888|KPRS5_ARATH (e_value=2e-179) Ribose-phosphate pyrophosphokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PRS5 PE=2 SV=2;; (*TAIR) AT2G44530.1 (e_value=2e-180) | Symbols: | Phosphoribosyltransferase family protein | chr2:18383732-18385974 FORWARD LENGTH=394;; (*ITAG) Solyc08g077200.2.1 (e_value=7e-169) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00002247g0003.1 protein AED:0.12 eAED:0.12 QI:166|0.9|0.90|1|0.3|0.27|11|267|620; (*GB) gi|359489252|ref|XP_002263787.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=4e-97) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc03g065250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:38386004-38392028 transcript_region:SL2.40ch03:38386004..38392028- go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00031805g0001.1 protein AED:0.10 eAED:0.10 QI:165|0|0.5|1|0|0.5|2|0|409; (*GB) gi|5123836|emb|CAB45387.1| (e_value=0.0) NAD-malate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SN86|MDHP_ARATH (e_value=0.0) Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1;; (*TAIR) AT3G47520.1 (e_value=0.0) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403;; (*ITAG) Solyc03g115990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59594180-59595418 transcript_region:SL2.40ch03:59594180..59595418+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** O48906_MEDSA); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00031805g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.25|0.5|0.66|1|4|127|205; (*GB) gi|357514399|ref|XP_003627488.1| (e_value=3e-12) hypothetical protein MTR_8g023650 [Medicago truncatula]; NbS00000614g0013.1 protein AED:0.27 eAED:0.33 QI:284|0.66|0.75|1|0|0|4|278|25 NbS00000614g0014.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|1|0.66|3|0|354; (*GB) gi|3283996|gb|AAC25423.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|P28582|CDPK_DAUCA (e_value=8e-174) Calcium-dependent protein kinase OS=Daucus carota PE=2 SV=2;; (*TAIR) AT4G04720.1 (e_value=4e-168) | Symbols: CPK21 | calcium-dependent protein kinase 21 | chr4:2394817-2397631 REVERSE LENGTH=531;; (*ITAG) Solyc03g031670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000614g0017.1 protein AED:0.35 eAED:0.35 QI:17|0.5|0.6|0.6|1|0.8|5|0|188; (*GB) gi|3283996|gb|AAC25423.1| (e_value=2e-131) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|O49717|CDPKF_ARATH (e_value=1e-113) Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1;; (*TAIR) AT4G21940.1 (e_value=1e-114) | Symbols: CPK15 | calcium-dependent protein kinase 15 | chr4:11640847-11643387 FORWARD LENGTH=554;; (*ITAG) Solyc03g031670.2.1 (e_value=1e-126) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000614g0001.1 protein AED:0.38 eAED:0.45 QI:250|1|0.66|1|0|0|3|0|210 NbS00000614g0018.1 protein AED:0.28 eAED:0.51 QI:0|0|0.33|1|0|0|3|195|124 NbS00018449g0017.1 protein AED:0.04 eAED:0.04 QI:273|0.83|0.85|1|0.5|0.57|7|202|176; (*GB) gi|225448423|ref|XP_002271201.1| (e_value=9e-65) PREDICTED: probable DNA replication complex GINS protein PSF3 [Vitis vinifera];; (*TAIR) AT3G55490.1 (e_value=5e-63) | Symbols: | GINS complex protein | chr3:20572171-20573415 REVERSE LENGTH=185;; (*ITAG) Solyc05g008620.2.1 (e_value=1e-104) genomic_reference:SL2.40ch05 gene_region:2927798-2931476 transcript_region:SL2.40ch05:2927798..2931476- functional_description:"DNA replication complex GINS protein psf3 (AHRD V1 ***- C5FUE7_NANOT); contains Interpro domain(s) IPR010492 GINS complex, Psf3 component "; NbS00018449g0022.1 protein AED:0.11 eAED:0.11 QI:216|0.66|0.57|1|0.83|0.85|7|0|403; (*GB) gi|225424114|ref|XP_002282753.1| (e_value=0.0) PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZU52|ALFC3_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1;; (*TAIR) AT2G01140.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:95006-96491 REVERSE LENGTH=391;; (*ITAG) Solyc05g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2916906-2920232 transcript_region:SL2.40ch05:2916906..2920232- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B9SJY9_RICCO); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00018449g0011.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|225424108|ref|XP_002283507.1| (e_value=1e-38) PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Vitis vinifera];; (*SWP) sp|Q9ZT50|RHA2A_ARATH (e_value=9e-29) E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1;; (*TAIR) AT1G15100.1 (e_value=7e-30) | Symbols: RHA2A | RING-H2 finger A2A | chr1:5193703-5194170 REVERSE LENGTH=155;; (*ITAG) Solyc05g008640.1.1 (e_value=1e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2949918-2950433 transcript_region:SL2.40ch05:2949918..2950433+ go_terms:GO:0005515,GO:0004842 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00018449g0023.1 protein AED:0.20 eAED:0.20 QI:636|1|0.72|1|0.9|0.90|11|0|724; (*GB) gi|297737752|emb|CBI26953.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=3e-159) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT1G17980.1 (e_value=0.0) | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:6187742-6191418 REVERSE LENGTH=713;; (*ITAG) Solyc05g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2934132-2942578 transcript_region:SL2.40ch05:2934132..2942578+ go_terms:GO:0005515 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR014492 Poly(A) polymerase "; GO:0005515 NbS00018449g0024.1 protein AED:0.21 eAED:0.21 QI:202|0.85|1|1|0.71|0.87|8|62|366; (*GB) gi|359490986|ref|XP_002277437.2| (e_value=0.0) PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=2e-135) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=3e-151) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00008641g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.6|1|0.75|0.8|5|222|511; (*GB) gi|12229631|sp|O24145.1|4CL1_TOBAC (e_value=0.0) RecName: Full=4-coumarate--CoA ligase 1; Short=4CL 1; AltName: Full=4-coumaroyl-CoA synthase 1;; (*SWP) sp|O24145|4CL1_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=0.0) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc06g068650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38947648-38951634 transcript_region:SL2.40ch06:38947648..38951634- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00008696g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|76; (*GB) gi|224060269|ref|XP_002300115.1| (e_value=4e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27027.1 (e_value=2e-25) | Symbols: | Protein of unknown function (DUF 3339) | chr3:9971921-9972130 FORWARD LENGTH=69;; (*ITAG) Solyc02g068160.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32772166-32772402 transcript_region:SL2.40ch02:32772166..32772402- functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00025587g0003.1 protein AED:0.01 eAED:0.01 QI:38|1|1|1|1|1|2|74|117; (*GB) gi|343424521|gb|AEM24937.1| (e_value=6e-72) thionin-like protein [Nicotiana tabacum];; (*ITAG) Solyc10g007870.2.1 (e_value=1e-34) genomic_reference:SL2.40ch10 gene_region:2075626-2077518 transcript_region:SL2.40ch10:2075626..2077518+ functional_description:"Tumor-related protein (AHRD V1 ***- Q40447_9SOLA)"; NbS00051346g0002.1 protein AED:0.32 eAED:0.32 QI:145|0.6|0.66|0.83|0|0.16|6|0|264; (*GB) gi|224139462|ref|XP_002323124.1| (e_value=1e-59) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50740.1 (e_value=3e-43) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637847 REVERSE LENGTH=283;; (*ITAG) Solyc04g015030.2.1 (e_value=5e-74) genomic_reference:SL2.40ch04 gene_region:5235855-5241900 transcript_region:SL2.40ch04:5235855..5241900+ go_terms:GO:0046914 functional_description:"Metal ion binding protein (AHRD V1 *--* B6SZL4_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0046914 NbS00012226g0001.1 protein AED:0.14 eAED:0.14 QI:356|1|1|1|0.5|0.33|3|271|241; (*GB) gi|255586944|ref|XP_002534072.1| (e_value=3e-109) ER glycerol-phosphate acyltransferase [Ricinus communis];; (*SWP) sp|Q9SHJ5|GPAT1_ARATH (e_value=4e-96) Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1;; (*TAIR) AT1G06520.1 (e_value=3e-97) | Symbols: ATGPAT1, GPAT1 | glycerol-3-phosphate acyltransferase 1 | chr1:1994170-1996067 REVERSE LENGTH=585;; (*ITAG) Solyc07g056320.2.1 (e_value=1e-128) genomic_reference:SL2.40ch07 gene_region:61490513-61494160 transcript_region:SL2.40ch07:61490513..61494160- go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T753_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00055762g0001.1 protein AED:0.33 eAED:0.33 QI:731|0.8|0.66|1|0.6|0.5|6|0|177; (*GB) gi|147865038|emb|CAN78967.1| (e_value=8e-12) hypothetical protein VITISV_027273 [Vitis vinifera];; (*ITAG) Solyc01g073870.2.1 (e_value=4e-38) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00055442g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.5|1|0.66|0.5|4|0|165; (*GB) gi|358364707|gb|AEU08961.1| (e_value=2e-72) flowering locus T [Litchi chinensis];; (*SWP) sp|Q93WI9|HD3A_ORYSJ (e_value=3e-64) Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1;; (*TAIR) AT1G65480.1 (e_value=3e-63) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc05g053850.2.1 (e_value=3e-74) genomic_reference:SL2.40ch05 gene_region:63036304-63038329 transcript_region:SL2.40ch05:63036304..63038329+ go_terms:GO:0008429 functional_description:"SELF PRUNING 5G"; GO:0008429 NbS00001282g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|0|0|2|97|387; (*GB) gi|225452805|ref|XP_002283468.1| (e_value=3e-166) PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=1e-33) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT5G15240.1 (e_value=3e-147) | Symbols: | Transmembrane amino acid transporter family protein | chr5:4947762-4950211 FORWARD LENGTH=423;; (*ITAG) Solyc03g013160.2.1 (e_value=8e-156) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00000269g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|0.83|6|0|318; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g074530.1.1 (e_value=7e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00007332g0003.1 protein AED:0.39 eAED:0.39 QI:27|0|0.5|0.5|0|0|2|207|41 NbS00007332g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|297740726|emb|CBI30908.3| (e_value=2e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G34580.2 (e_value=2e-23) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Herpesvirus UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:14566673-14567640 REVERSE LENGTH=162; NbS00014183g0004.1 protein AED:0.30 eAED:0.31 QI:84|0.33|0|1|0.33|0.5|4|0|416; (*GB) gi|3913423|sp|O04009.1|DCAM_TOBAC (e_value=0.0) RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Short=SAMDC; Contains: RecName: Full=S-adenosylmethionine decarboxylase alpha chain; Contains: RecName: Full=S-adenosylmethionine decarboxylase beta chain; Flags: Precursor;; (*SWP) sp|O04009|DCAM_TOBAC (e_value=0.0) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1;; (*TAIR) AT3G25570.2 (e_value=4e-161) | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349;; (*ITAG) Solyc05g010420.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00061598g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.66|0.66|0.5|0.66|3|280|73; (*GB) gi|225456785|ref|XP_002277247.1| (e_value=2e-25) PREDICTED: RPM1-interacting protein 4 [Vitis vinifera];; (*TAIR) AT5G40645.1 (e_value=3e-23) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:16280410-16280883 REVERSE LENGTH=73;; (*ITAG) Solyc02g093670.2.1 (e_value=1e-43) genomic_reference:SL2.40ch02 gene_region:49011572-49013000 transcript_region:SL2.40ch02:49011572..49013000+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- B6SJI8_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00017618g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|1|1|3|0|328; (*GB) gi|129560507|dbj|BAF48804.1| (e_value=4e-58) wound-responsive AP2 like factor 2 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=2e-18) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=1e-19) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc01g108240.2.1 (e_value=2e-53) genomic_reference:SL2.40ch01 gene_region:87368287-87369574 transcript_region:SL2.40ch01:87368287..87369574+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00009925g0008.1 protein AED:0.45 eAED:0.49 QI:0|0.2|0.16|0.83|0.4|0.5|6|0|188; (*GB) gi|350537893|ref|NP_001233804.1| (e_value=2e-90) protein phosphatase 2A catalytic subunit [Solanum lycopersicum];; (*SWP) sp|Q0DBD3|PP2A1_ORYSJ (e_value=7e-91) Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A1 PE=2 SV=1;; (*TAIR) AT1G59830.1 (e_value=6e-91) | Symbols: PP2A-1 | protein phosphatase 2A-2 | chr1:22020708-22022293 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=3e-93) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00009925g0002.1 protein AED:0.06 eAED:0.06 QI:111|0.5|0.66|1|1|1|3|251|177; (*GB) gi|225424825|ref|XP_002272374.1| (e_value=5e-42) PREDICTED: uncharacterized protein LOC100248470 [Vitis vinifera];; (*TAIR) AT1G69980.1 (e_value=6e-35) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26356559-26357647 REVERSE LENGTH=205;; (*ITAG) Solyc05g006580.2.1 (e_value=2e-65) genomic_reference:SL2.40ch05 gene_region:1210946-1213877 transcript_region:SL2.40ch05:1210946..1213877+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047353g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|359479210|ref|XP_002272233.2| (e_value=4e-107) PREDICTED: cation/calcium exchanger 3-like [Vitis vinifera];; (*SWP) sp|Q9FKP1|CCX1_ARATH (e_value=5e-89) Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1;; (*TAIR) AT5G17860.1 (e_value=4e-90) | Symbols: CAX7 | calcium exchanger 7 | chr5:5902638-5904350 REVERSE LENGTH=570;; (*ITAG) Solyc07g006370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1194436-1196139 transcript_region:SL2.40ch07:1194436..1196139- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00047353g0002.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|255586733|ref|XP_002533989.1| (e_value=7e-82) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q940Q4|ATL13_ARATH (e_value=2e-39) RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2;; (*TAIR) AT4G30400.1 (e_value=1e-40) | Symbols: | RING/U-box superfamily protein | chr4:14867068-14868486 FORWARD LENGTH=472;; (*ITAG) Solyc07g006360.1.1 (e_value=7e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1188947-1190386 transcript_region:SL2.40ch07:1188947..1190386+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003909g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|399; (*GB) gi|255541730|ref|XP_002511929.1| (e_value=0.0) ATRAD3, putative [Ricinus communis];; (*TAIR) AT4G01240.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:517795-521972 REVERSE LENGTH=659;; (*ITAG) Solyc01g095190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78303471-78304836 transcript_region:SL2.40ch01:78303471..78304836+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ)"; NbS00003909g0012.1 protein AED:0.27 eAED:0.27 QI:261|1|1|1|0.75|0.6|5|542|268; (*GB) gi|359474299|ref|XP_002277080.2| (e_value=4e-111) PREDICTED: uncharacterized protein LOC100267262 [Vitis vinifera];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=3e-96) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=2e-97) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc01g095200.2.1 (e_value=5e-138) genomic_reference:SL2.40ch01 gene_region:78306398-78309475 transcript_region:SL2.40ch01:78306398..78309475+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00003909g0005.1 protein AED:0.44 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|168 NbS00003909g0016.1 protein AED:0.50 eAED:1.00 QI:0|0|0|1|1|1|3|0|110 NbS00003909g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.90|0.90|1|1|11|329|554; (*GB) gi|359489673|ref|XP_003633963.1| (e_value=3e-142) PREDICTED: golgin candidate 4-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8VYU6|GOGC4_ARATH (e_value=1e-108) Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1;; (*TAIR) AT2G46180.1 (e_value=9e-110) | Symbols: GC4 | golgin candidate 4 | chr2:18967482-18971260 REVERSE LENGTH=725;; (*ITAG) Solyc01g095210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78309617-78322349 transcript_region:SL2.40ch01:78309617..78322349- go_terms:GO:0005515 functional_description:"Golgin candidate 4 (AHRD V1 **-- GOGC4_ARATH)"; GO:0005515 NbS00003909g0019.1 protein AED:0.54 eAED:0.77 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|255541734|ref|XP_002511931.1| (e_value=1e-25) Structural maintenance of chromosome 1 protein, putative [Ricinus communis];; (*SWP) sp|Q8VYU6|GOGC4_ARATH (e_value=1e-25) Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1;; (*TAIR) AT2G46180.1 (e_value=9e-27) | Symbols: GC4 | golgin candidate 4 | chr2:18967482-18971260 REVERSE LENGTH=725;; (*ITAG) Solyc01g095210.2.1 (e_value=5e-49) genomic_reference:SL2.40ch01 gene_region:78309617-78322349 transcript_region:SL2.40ch01:78309617..78322349- go_terms:GO:0005515 functional_description:"Golgin candidate 4 (AHRD V1 **-- GOGC4_ARATH)"; GO:0005515 NbS00003909g0017.1 protein AED:0.23 eAED:0.97 QI:0|0|0|1|0|0|2|0|102 NbS00002066g0003.1 protein AED:0.07 eAED:0.16 QI:10|0|0|1|0|0|2|0|338; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=1e-122) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT5G22070.1 (e_value=2e-112) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:7308255-7309343 FORWARD LENGTH=362;; (*ITAG) Solyc11g006470.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1157226-1159480 transcript_region:SL2.40ch11:1157226..1159480+ go_terms:GO:0005840 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005840 NbS00047099g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|95; (*ITAG) Solyc08g008040.2.1 (e_value=9e-26) genomic_reference:SL2.40ch08 gene_region:2534141-2538271 transcript_region:SL2.40ch08:2534141..2538271+ functional_description:"rRNA-processing protein UTP23 homolog (AHRD V1 *--- D3PH70_9MAXI); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; NbS00019894g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|68; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=1e-23) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031857g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|56694219|gb|AAW22881.1| (e_value=2e-40) putative EARLY flowering 4 protein [Solanum lycopersicum];; (*SWP) sp|O04211|ELF4_ARATH (e_value=3e-29) Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1;; (*TAIR) AT2G40080.1 (e_value=2e-30) | Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111;; (*ITAG) Solyc06g051660.1.1 (e_value=3e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:31685006-31685371 transcript_region:SL2.40ch06:31685006..31685371- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00031857g0006.1 protein AED:0.42 eAED:0.49 QI:0|0.55|0.5|0.9|0.88|0.9|10|0|338; (*GB) gi|56694218|gb|AAW22880.1| (e_value=2e-116) putative cyclophilin [Solanum lycopersicum];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=3e-83) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT2G29960.1 (e_value=3e-84) | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201;; (*ITAG) Solyc06g051650.2.1 (e_value=4e-119) genomic_reference:SL2.40ch06 gene_region:31680154-31684846 transcript_region:SL2.40ch06:31680154..31684846+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase B (AHRD V1 **** PPIB_DICDI); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00031857g0003.1 protein AED:0.61 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|112 NbS00027958g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|57013939|ref|YP_173412.1| (e_value=3e-78) cytochrome oxidase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P98012|COX2_BETVU (e_value=2e-73) Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1;; (*ITAG) ATMG00160.1 (e_value=5e-71) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=6e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbC26077604g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|364; (*GB) gi|193290726|gb|ACF17671.1| (e_value=4e-171) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|O66119|ODP2_ZYMMO (e_value=9e-28) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2;; (*TAIR) AT1G34430.1 (e_value=2e-133) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00028334g0001.1 protein AED:0.23 eAED:0.28 QI:0|0|0|1|1|1|2|0|315; (*GB) gi|231804|sp|P22927.2|CHSG_PETHY (e_value=2e-141) RecName: Full=Chalcone synthase G; AltName: Full=Naringenin-chalcone synthase G;; (*SWP) sp|P22927|CHSG_PETHY (e_value=5e-143) Chalcone synthase G OS=Petunia hybrida GN=CHSG PE=2 SV=2;; (*TAIR) AT5G13930.1 (e_value=4e-133) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc05g053550.2.1 (e_value=6e-141) genomic_reference:SL2.40ch05 gene_region:62779402-62781543 transcript_region:SL2.40ch05:62779402..62781543+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- C5IWS6_NICAL); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008415,GO:0008152,GO:0009058 NbS00020059g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|134; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-22) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00020059g0008.1 protein AED:0.25 eAED:0.26 QI:0|0.62|0.66|1|0.75|0.66|9|301|790; (*GB) gi|359496777|ref|XP_002265108.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252003 [Vitis vinifera];; (*TAIR) AT4G37900.1 (e_value=0.0) | Symbols: | Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787;; (*ITAG) Solyc02g063450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30120817-30126388 transcript_region:SL2.40ch02:30120817..30126388- functional_description:"Hypothetical YFW family protein 5 (AHRD V1 *--- Q5AP84_CANAL); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00025278g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|368; (*GB) gi|297740648|emb|CBI30830.3| (e_value=5e-109) unnamed protein product [Vitis vinifera];; (*SWP) sp|O49726|PUP9_ARATH (e_value=2e-110) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=5e-109) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc02g071090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35154902-35157324 transcript_region:SL2.40ch02:35154902..35157324- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00005788g0007.1 protein AED:0.10 eAED:0.10 QI:98|0.5|0.33|1|0.5|0.33|3|0|539; (*GB) gi|252972629|dbj|BAH84783.1| (e_value=0.0) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=4e-114) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G10600.1 (e_value=7e-144) | Symbols: CYP81K2 | cytochrome P450, family 81, subfamily K, polypeptide 2 | chr5:3351227-3352777 FORWARD LENGTH=516;; (*ITAG) Solyc04g078340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60696429-60698416 transcript_region:SL2.40ch04:60696429..60698416+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00059310g0004.1 protein AED:0.12 eAED:0.12 QI:61|0.66|0.5|1|1|1|4|227|587; (*GB) gi|297738198|emb|CBI27399.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g011830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5061298-5063494 transcript_region:SL2.40ch05:5061298..5063494- functional_description:"Unknown Protein (AHRD V1)"; NbS00032028g0001.1 protein AED:0.01 eAED:0.01 QI:890|1|1|1|0|0.5|2|426|362; (*GB) gi|297831344|ref|XP_002883554.1| (e_value=1e-119) hypothetical protein ARALYDRAFT_479993 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G24740.2 (e_value=2e-118) | Symbols: | Protein of unknown function (DUF1644) | chr3:9032397-9033461 FORWARD LENGTH=354;; (*ITAG) Solyc09g061750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:55888369-55889505 transcript_region:SL2.40ch09:55888369..55889505+ functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00020749g0012.1 protein AED:0.12 eAED:0.17 QI:149|0.66|0.5|1|0.66|0.75|4|0|397; (*GB) gi|255546265|ref|XP_002514192.1| (e_value=3e-159) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=3e-61) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G29230.1 (e_value=1e-138) | Symbols: anac075, NAC075 | NAC domain containing protein 75 | chr4:14410338-14414956 FORWARD LENGTH=498;; (*ITAG) Solyc05g026180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40024726-40030220 transcript_region:SL2.40ch05:40024726..40030220+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H8X7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00020749g0011.1 protein AED:0.27 eAED:0.29 QI:0|0.85|0.73|0.93|0.92|0.8|15|608|521; (*GB) gi|587562|emb|CAA56520.1| (e_value=0.0) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|P29677|MPPA_SOLTU (e_value=0.0) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323692-19326771 REVERSE LENGTH=503;; (*ITAG) Solyc12g008630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00020749g0013.1 protein AED:0.06 eAED:0.06 QI:474|1|1|1|0.5|0.66|3|135|70 NbS00005072g0004.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|1|1|2|0|164; (*ITAG) Solyc03g118630.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:61532415-61533448 transcript_region:SL2.40ch03:61532415..61533448- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00042759g0001.1 protein AED:0.70 eAED:0.74 QI:0|0|0|0.33|1|1|6|0|380; (*ITAG) Solyc00g015610.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11213131-11216611 transcript_region:SL2.40ch00:11213131..11216611+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042759g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|405; (*GB) gi|255574623|ref|XP_002528222.1| (e_value=0.0) UDP-glucuronate 5-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9M0B6|GAE1_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1;; (*TAIR) AT4G30440.1 (e_value=0.0) | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 | chr4:14881976-14883265 REVERSE LENGTH=429;; (*ITAG) Solyc07g006220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:1040113-1041390 transcript_region:SL2.40ch07:1040113..1041390- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 1 (AHRD V1 **** D7MBW0_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00003365g0011.1 protein AED:0.32 eAED:0.32 QI:144|0.88|0.6|1|0.66|0.6|10|414|205; (*GB) gi|297743172|emb|CBI36039.3| (e_value=4e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G01590.2 (e_value=2e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:689077-690192 REVERSE LENGTH=199;; (*ITAG) Solyc06g083510.2.1 (e_value=1e-51) genomic_reference:SL2.40ch06 gene_region:45199298-45204024 transcript_region:SL2.40ch06:45199298..45204024- functional_description:"Unknown Protein (AHRD V1)"; NbS00003365g0013.1 protein AED:0.08 eAED:0.13 QI:0|1|0|1|0|0|2|0|340; (*GB) gi|297739485|emb|CBI29667.3| (e_value=2e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=1e-26) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT5G63700.1 (e_value=4e-48) | Symbols: | zinc ion binding;DNA binding | chr5:25493934-25497632 REVERSE LENGTH=602;; (*ITAG) Solyc01g103250.2.1 (e_value=1e-144) genomic_reference:SL2.40ch01 gene_region:83659592-83668821 transcript_region:SL2.40ch01:83659592..83668821+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase NSD3 (AHRD V1 *--- NSD3_HUMAN); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00003365g0012.1 protein AED:0.70 eAED:0.87 QI:0|0|0.33|0.66|1|1|3|0|97 NbS00016176g0004.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|194; (*ITAG) Solyc06g017950.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:12004908-12005441 transcript_region:SL2.40ch06:12004908..12005441+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016176g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.8|1|1|1|5|0|578; (*GB) gi|359474462|ref|XP_002276953.2| (e_value=2e-163) PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera];; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=3e-122) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.1 (e_value=2e-123) | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615894 FORWARD LENGTH=589;; (*ITAG) Solyc08g076420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57594964-57603672 transcript_region:SL2.40ch08:57594964..57603672- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00043211g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|442; (*GB) gi|225456830|ref|XP_002276016.1| (e_value=6e-109) PREDICTED: vegetative incompatibility protein HET-E-1 [Vitis vinifera];; (*SWP) sp|Q8YTC2|Y2800_NOSS1 (e_value=1e-17) Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1;; (*TAIR) AT1G24530.1 (e_value=4e-98) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:8693287-8694543 FORWARD LENGTH=418;; (*ITAG) Solyc03g111780.1.1 (e_value=6e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56466780-56467985 transcript_region:SL2.40ch03:56466780..56467985+ go_terms:GO:0000166 functional_description:"WD-40 repeat family protein (AHRD V1 **-- Q1EPE0_MUSAC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00002407g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|0.66|3|0|222; (*GB) gi|359488652|ref|XP_002271033.2| (e_value=1e-82) PREDICTED: myb-related protein 315-like [Vitis vinifera];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=1e-66) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G14340.1 (e_value=3e-77) | Symbols: AtMYB40, MYB40 | myb domain protein 40 | chr5:4623367-4624779 FORWARD LENGTH=263;; (*ITAG) Solyc05g014290.2.1 (e_value=2e-108) genomic_reference:SL2.40ch05 gene_region:8093800-8095104 transcript_region:SL2.40ch05:8093800..8095104- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002407g0008.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|230; (*GB) gi|22530884|gb|AAM96946.1| (e_value=3e-100) small heat shock protein [Solanum lycopersicum];; (*SWP) sp|P31170|HS25P_ARATH (e_value=4e-39) 25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1;; (*TAIR) AT4G27670.1 (e_value=3e-40) | Symbols: HSP21 | heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227;; (*ITAG) Solyc05g014280.2.1 (e_value=9e-103) genomic_reference:SL2.40ch05 gene_region:8089580-8092146 transcript_region:SL2.40ch05:8089580..8092146- functional_description:"Heat shock protein (AHRD V1 ***- A9QVH3_9FABA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00002407g0108.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.6|0.73|0.5|0.6|15|165|739 NbS00002407g0107.1 protein AED:0.09 eAED:0.09 QI:75|1|1|1|1|1|5|589|528 NbS00002407g0213.1 protein AED:0.12 eAED:0.15 QI:388|0.85|0.66|1|1|1|15|0|924 NbS00002407g0217.1 protein AED:0.13 eAED:0.13 QI:0|0.4|0.16|1|0.4|0.66|6|0|248 NbS00020765g0016.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.57|1|0.66|0.57|7|0|613; (*GB) gi|255568450|ref|XP_002525199.1| (e_value=1e-131) sensory transduction histidine kinase, putative [Ricinus communis];; (*SWP) sp|Q93WK5|APRR7_ARATH (e_value=6e-88) Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1;; (*TAIR) AT5G02810.1 (e_value=5e-89) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727;; (*ITAG) Solyc10g086000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64312291-64321881 transcript_region:SL2.40ch10:64312291..64321881- go_terms:GO:0016564 functional_description:"Pseudo-response regulator 7 (AHRD V1 ***- D0PPG7_CASSA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016564 NbS00020765g0005.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|319657108|gb|ADV58932.1| (e_value=1e-13) pseudo-response regulator 7-like protein [Beta vulgaris subsp. vulgaris];; (*SWP) sp|Q93WK5|APRR7_ARATH (e_value=2e-13) Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1;; (*TAIR) AT5G02810.1 (e_value=2e-14) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727;; (*ITAG) Solyc10g086000.1.1 (e_value=1e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64312291-64321881 transcript_region:SL2.40ch10:64312291..64321881- go_terms:GO:0016564 functional_description:"Pseudo-response regulator 7 (AHRD V1 ***- D0PPG7_CASSA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016564 NbS00020765g0014.1 protein AED:0.20 eAED:0.36 QI:0|0|0|1|0|0|4|0|307; (*GB) gi|225441082|ref|XP_002264567.1| (e_value=7e-68) PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera];; (*SWP) sp|Q9CS00|CS029_MOUSE (e_value=4e-14) Uncharacterized protein C19orf29 homolog OS=Mus musculus PE=1 SV=2;; (*TAIR) AT1G03910.1 (e_value=4e-59) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=3e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00020765g0015.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|225441082|ref|XP_002264567.1| (e_value=3e-23) PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera];; (*TAIR) AT1G03910.1 (e_value=2e-20) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00020765g0013.1 protein AED:0.49 eAED:0.71 QI:0|0|0|1|0|0|2|0|62; (*TAIR) AT1G03910.1 (e_value=1e-16) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00004956g0003.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|360; (*GB) gi|225453144|ref|XP_002273909.1| (e_value=8e-153) PREDICTED: U-box domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=6e-35) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G03440.1 (e_value=6e-114) | Symbols: | ARM repeat superfamily protein | chr3:815709-818568 FORWARD LENGTH=408;; (*ITAG) Solyc03g043700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11189118-11192050 transcript_region:SL2.40ch03:11189118..11192050- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L0H5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00004956g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|224077620|ref|XP_002305331.1| (e_value=6e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=7e-24) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G24840.1 (e_value=5e-25) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc04g056740.1.1 (e_value=2e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00004956g0014.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|124199|sp|P12136.1|IF1C_TOBAC (e_value=2e-20) RecName: Full=Putative translation initiation factor IF-1, chloroplastic;; (*SWP) sp|P12136|IF1C_TOBAC (e_value=4e-22) Putative translation initiation factor IF-1, chloroplastic OS=Nicotiana tabacum GN=infA PE=5 SV=1; NbS00004956g0015.1 protein AED:0.25 eAED:0.30 QI:0|0|0|1|0|0|2|0|84; (*GB) gi|42718201|gb|AAS38532.1| (e_value=7e-41) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Hygrolembidium acrocladum];; (*SWP) sp|Q05984|RBL_APOCA (e_value=4e-41) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Apocynum cannabinum GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=7e-41) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00027545g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.33|0.66|0.5|0.66|3|433|121; (*GB) gi|356545802|ref|XP_003541323.1| (e_value=6e-49) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max];; (*TAIR) AT3G43300.2 (e_value=6e-48) | Symbols: ATMIN7 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1727;; (*ITAG) Solyc12g017830.1.1 (e_value=2e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00061007g0004.1 protein AED:0.14 eAED:0.14 QI:104|0.5|0.6|1|0.75|0.6|5|229|382; (*GB) gi|225443980|ref|XP_002274093.1| (e_value=6e-76) PREDICTED: F-box protein SKIP19 [Vitis vinifera];; (*SWP) sp|Q9S9V9|FBL23_ARATH (e_value=8e-71) Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1;; (*TAIR) AT4G05460.1 (e_value=3e-64) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g013820.2.1 (e_value=4e-96) genomic_reference:SL2.40ch08 gene_region:3170642-3174481 transcript_region:SL2.40ch08:3170642..3174481- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00023622g0001.1 protein AED:0.17 eAED:0.17 QI:123|1|0.88|1|0.87|0.77|9|0|579; (*GB) gi|225428564|ref|XP_002281077.1| (e_value=0.0) PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XIA4|CCS1_ARATH (e_value=0.0) Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1;; (*TAIR) AT1G49380.1 (e_value=0.0) | Symbols: | cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547;; (*ITAG) Solyc10g051200.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47193947-47197659 transcript_region:SL2.40ch10:47193947..47197659- functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7KE35_ARALY); contains Interpro domain(s) IPR007816 ResB-like "; NbS00017753g0002.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|1|1|2|0|189; (*GB) gi|33312438|gb|AAQ04061.1| (e_value=2e-68) 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum];; (*SWP) sp|O80575|RISB_ARATH (e_value=4e-40) 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1;; (*TAIR) AT2G44050.1 (e_value=3e-41) | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase | chr2:18224304-18225917 FORWARD LENGTH=227;; (*ITAG) Solyc12g096590.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63783509-63787350 transcript_region:SL2.40ch12:63783509..63787350- go_terms:GO:0009349 functional_description:"6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 ***- B2CM14_SOLCH); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase "; GO:0009349 NbS00017753g0003.1 protein AED:0.46 eAED:0.46 QI:0|0.16|0|0.42|1|1|7|0|250; (*GB) gi|356573785|ref|XP_003555036.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100797980 [Glycine max]; NbS00011116g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|343; (*GB) gi|225464346|ref|XP_002272090.1| (e_value=2e-154) PREDICTED: probable sarcosine oxidase-like [Vitis vinifera];; (*SWP) sp|Q9SJA7|SOX_ARATH (e_value=1e-140) Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1;; (*TAIR) AT2G24580.1 (e_value=9e-142) | Symbols: | FAD-dependent oxidoreductase family protein | chr2:10444928-10446178 REVERSE LENGTH=416;; (*ITAG) Solyc08g006430.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:1030757-1039198 transcript_region:SL2.40ch08:1030757..1039198+ go_terms:GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 functional_description:"N-methyl-L-tryptophan oxidase (AHRD V1 *-*- D2ZAX1_9ENTR); contains Interpro domain(s) IPR006281 Sarcosine oxidase, monomeric "; GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 NbS00011116g0014.1 protein AED:0.21 eAED:0.24 QI:14|0.5|0.4|1|0.75|0.8|5|1520|206; (*GB) gi|332038856|gb|ACX54788.2| (e_value=3e-47) putative arginine/serine-rich splicing factor [Arachis diogoi];; (*SWP) sp|Q9SJA6|RZ22A_ARATH (e_value=3e-46) Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1;; (*TAIR) AT2G24590.1 (e_value=2e-47) | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif and CCHC-type zinc finger domains containing protein | chr2:10449837-10450860 FORWARD LENGTH=196;; (*ITAG) Solyc08g006430.2.1 (e_value=1e-46) genomic_reference:SL2.40ch08 gene_region:1030757-1039198 transcript_region:SL2.40ch08:1030757..1039198+ go_terms:GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 functional_description:"N-methyl-L-tryptophan oxidase (AHRD V1 *-*- D2ZAX1_9ENTR); contains Interpro domain(s) IPR006281 Sarcosine oxidase, monomeric "; GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 NbS00011116g0001.1 protein AED:0.00 eAED:0.00 QI:231|-1|1|1|-1|1|1|0|547; (*ITAG) Solyc08g006440.2.1 (e_value=9e-40) genomic_reference:SL2.40ch08 gene_region:1043932-1046533 transcript_region:SL2.40ch08:1043932..1046533- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00019355g0002.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|195; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-21) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019355g0005.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.5|2|0|236; (*GB) gi|17940748|gb|AAL49753.1|AF452015_1 (e_value=4e-140) aquaporin-like protein [Petunia x hybrida];; (*SWP) sp|P50156|TIP11_ORYSJ (e_value=9e-126) Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1;; (*TAIR) AT2G36830.1 (e_value=1e-126) | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251;; (*ITAG) Solyc06g074820.2.1 (e_value=6e-140) genomic_reference:SL2.40ch06 gene_region:42747475-42749825 transcript_region:SL2.40ch06:42747475..42749825+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- D1M6Z5_CAPAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00006254g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|427; (*GB) gi|1773014|emb|CAA71369.1| (e_value=4e-13) chloride channel Stclc1 [Solanum tuberosum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=4e-12) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=3e-13) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc10g044470.1.1 (e_value=7e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21959526-21966277 transcript_region:SL2.40ch10:21959526..21966277+ go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbC24238393g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|0|0|2|0|69; (*GB) gi|357464833|ref|XP_003602698.1| (e_value=2e-23) Tetratricopeptide repeat protein, partial [Medicago truncatula];; (*TAIR) AT5G17270.1 (e_value=1e-24) | Symbols: | Protein prenylyltransferase superfamily protein | chr5:5679995-5685597 FORWARD LENGTH=899;; (*ITAG) Solyc07g008760.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:3728618-3747433 transcript_region:SL2.40ch07:3728618..3747433- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat (TPR)-containing protein-like protein (AHRD V1 ***- Q84NS6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001201g0004.1 protein AED:0.01 eAED:0.01 QI:351|1|1|1|0|0.33|3|758|105 NbS00004674g0006.1 protein AED:0.23 eAED:0.24 QI:337|0.88|0.7|1|0.55|0.5|10|0|615; (*GB) gi|255558846|ref|XP_002520446.1| (e_value=0.0) ceramidase, putative [Ricinus communis];; (*SWP) sp|Q304B9|NCASE_ARATH (e_value=0.0) Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1;; (*TAIR) AT1G07380.1 (e_value=0.0) | Symbols: | Neutral/alkaline non-lysosomal ceramidase | chr1:2264829-2268306 REVERSE LENGTH=779;; (*ITAG) Solyc03g006140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:791650-799108 transcript_region:SL2.40ch03:791650..799108- go_terms:GO:0017040 functional_description:"Neutral ceramidase (AHRD V1 **** A9YFM2_WHEAT); contains Interpro domain(s) IPR006823 Neutral/alkaline nonlysosomal ceramidase "; GO:0017040 NbS00004707g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|225427631|ref|XP_002269914.1| (e_value=9e-68) PREDICTED: uncharacterized protein LOC100252848 [Vitis vinifera];; (*TAIR) AT5G45320.1 (e_value=2e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18362354-18363053 REVERSE LENGTH=198;; (*ITAG) Solyc08g075230.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56515261-56515857 transcript_region:SL2.40ch08:56515261..56515857- functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 ***- Q9FKU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00004707g0003.1 protein AED:0.29 eAED:0.64 QI:0|0|0|1|0|0|2|0|102 NbS00007983g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|0.5|2|0|103; (*GB) gi|356514577|ref|XP_003525982.1| (e_value=2e-34) PREDICTED: probable protein phosphatase 2C 74-like [Glycine max];; (*SWP) sp|Q9SA22|P2C06_ARATH (e_value=2e-31) Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1;; (*TAIR) AT1G79630.2 (e_value=1e-32) | Symbols: | Protein phosphatase 2C family protein | chr1:29962931-29964382 REVERSE LENGTH=394;; (*ITAG) Solyc08g065500.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:50841687-50843264 transcript_region:SL2.40ch08:50841687..50843264+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 *-** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00007983g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|0|0|2|0|235; (*GB) gi|224119516|ref|XP_002331180.1| (e_value=7e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72490.1 (e_value=7e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc06g062970.1.1 (e_value=4e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36137415-36139378 transcript_region:SL2.40ch06:36137415..36139378+ functional_description:"F1L3.5 (AHRD V1 **-- Q9LNR9_ARATH)"; NbS00021578g0010.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.5|0|0.5|2|0|214; (*GB) gi|255567116|ref|XP_002524540.1| (e_value=1e-68) STS14 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q40374|PR1_MEDTR (e_value=4e-44) Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1;; (*TAIR) AT4G31470.1 (e_value=3e-61) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:15261746-15262303 REVERSE LENGTH=185;; (*ITAG) Solyc08g068990.1.1 (e_value=1e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55284508-55285815 transcript_region:SL2.40ch08:55284508..55285815- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein 1 (AHRD V1 ***- D5KR57_MUSPR); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005576 NbS00021578g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|180; (*GB) gi|15238642|ref|NP_197871.1| (e_value=1e-13) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G24890.1 (e_value=3e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8558357-8559172 REVERSE LENGTH=240;; (*ITAG) Solyc08g068970.2.1 (e_value=2e-35) genomic_reference:SL2.40ch08 gene_region:55272375-55273287 transcript_region:SL2.40ch08:55272375..55273287- functional_description:"Unknown Protein (AHRD V1)"; NbS00021578g0007.1 protein AED:0.39 eAED:0.39 QI:0|1|1|1|0|1|2|488|72 NbS00036851g0003.1 protein AED:0.32 eAED:0.35 QI:0|0.5|0.33|1|1|1|3|0|227; (*GB) gi|75278818|sp|O80363.1|RK17_TOBAC (e_value=4e-96) RecName: Full=50S ribosomal protein L17, chloroplastic; AltName: Full=CL17; Flags: Precursor;; (*SWP) sp|O80363|RK17_TOBAC (e_value=1e-97) 50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1;; (*TAIR) AT3G54210.1 (e_value=1e-79) | Symbols: | Ribosomal protein L17 family protein | chr3:20067672-20068385 REVERSE LENGTH=211;; (*ITAG) Solyc06g082750.2.1 (e_value=4e-93) genomic_reference:SL2.40ch06 gene_region:44741305-44743095 transcript_region:SL2.40ch06:44741305..44743095- go_terms:GO:0005840 functional_description:"50S ribosomal protein L17 (AHRD V1 ***- B4FZB4_MAIZE); contains Interpro domain(s) IPR000456 Ribosomal protein L17 "; GO:0005840 NbS00036851g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0.66|0.5|4|0|191; (*GB) gi|297813589|ref|XP_002874678.1| (e_value=3e-72) VIRB2-interacting protein 2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SUT9|RTNLB_ARATH (e_value=6e-71) Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1;; (*TAIR) AT4G11220.1 (e_value=5e-72) | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein 2 | chr4:6838176-6839578 REVERSE LENGTH=271;; (*ITAG) Solyc06g082740.2.1 (e_value=2e-104) genomic_reference:SL2.40ch06 gene_region:44739001-44741078 transcript_region:SL2.40ch06:44739001..44741078+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00054294g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|0|0.5|2|0|211; (*GB) gi|473102|emb|CAA82271.1| (e_value=6e-97) beta-1,3-glucanase [Nicotiana tabacum];; (*SWP) sp|P23535|E13B_PHAVU (e_value=1e-33) Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT4G26830.1 (e_value=1e-31) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:13494726-13496487 REVERSE LENGTH=455;; (*ITAG) Solyc11g071520.1.1 (e_value=9e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52050205-52052249 transcript_region:SL2.40ch11:52050205..52052249+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00014037g0016.1 protein AED:0.09 eAED:0.09 QI:206|1|1|1|1|1|3|1074|214; (*GB) gi|225460434|ref|XP_002266023.1| (e_value=2e-79) PREDICTED: probable peptide/nitrate transporter At1g22540 [Vitis vinifera];; (*SWP) sp|Q0WP01|PTR9_ARATH (e_value=6e-70) Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1;; (*TAIR) AT1G22540.1 (e_value=4e-71) | Symbols: | Major facilitator superfamily protein | chr1:7964202-7966222 FORWARD LENGTH=557;; (*ITAG) Solyc06g065020.2.1 (e_value=2e-85) genomic_reference:SL2.40ch06 gene_region:36931096-36935734 transcript_region:SL2.40ch06:36931096..36935734- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00014037g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.83|0.91|1|1|12|373|577; (*GB) gi|359493455|ref|XP_002266111.2| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 3 [Vitis vinifera];; (*SWP) sp|Q9HD45|TM9S3_HUMAN (e_value=0.0) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2;; (*TAIR) AT1G10950.1 (e_value=0.0) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc11g022540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14402969-14411888 transcript_region:SL2.40ch11:14402969..14411888- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00014037g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|242092498|ref|XP_002436739.1| (e_value=9e-53) hypothetical protein SORBIDRAFT_10g007930 [Sorghum bicolor];; (*TAIR) AT1G21150.1 (e_value=2e-45) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc04g072550.1.1 (e_value=2e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00014037g0008.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|220; (*GB) gi|218197832|gb|EEC80259.1| (e_value=5e-32) hypothetical protein OsI_22225 [Oryza sativa Indica Group];; (*TAIR) AT1G21150.1 (e_value=3e-27) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc11g022600.1.1 (e_value=9e-79) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:14689832-14690913 transcript_region:SL2.40ch11:14689832..14690913- functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00055886g0004.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|1|2|70|349; (*GB) gi|224138024|ref|XP_002326499.1| (e_value=7e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4R8H2|DNJC2_MACFA (e_value=3e-15) DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2 PE=2 SV=1;; (*TAIR) AT5G45420.1 (e_value=2e-70) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:18405668-18406597 REVERSE LENGTH=309;; (*ITAG) Solyc08g077290.1.1 (e_value=3e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58364439-58365398 transcript_region:SL2.40ch08:58364439..58365398- go_terms:GO:0003677 functional_description:"DnaJ homolog subfamily C member 2 (AHRD V1 *--- DNJC2_MACFA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0003677 NbS00031047g0029.1 protein AED:0.19 eAED:0.20 QI:0|0.78|0.73|0.93|0.71|0.86|15|0|482; (*GB) gi|359473731|ref|XP_003631353.1| (e_value=0.0) PREDICTED: mannosyl-oligosaccharide glucosidase [Vitis vinifera];; (*SWP) sp|Q19426|GCS1_CAEEL (e_value=6e-125) Probable mannosyl-oligosaccharide glucosidase OS=Caenorhabditis elegans GN=F13H10.4 PE=1 SV=2;; (*TAIR) AT1G67490.2 (e_value=0.0) | Symbols: GCS1, KNF | glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=768;; (*ITAG) Solyc05g015220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10075997-10095708 transcript_region:SL2.40ch05:10075997..10095708- go_terms:GO:0004573,GO:0004558 functional_description:"Mannosyl-oligosaccharide glucosidase (AHRD V1 **** B0WV10_CULQU); contains Interpro domain(s) IPR004888 Glycoside hydrolase, family 63 "; GO:0004573,GO:0004558 NbS00031047g0006.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|170; (*ITAG) Solyc01g056950.1.1 (e_value=5e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00031047g0016.1 protein AED:0.30 eAED:0.32 QI:329|0.75|0.6|1|0.75|0.6|5|0|141; (*GB) gi|359473731|ref|XP_003631353.1| (e_value=3e-68) PREDICTED: mannosyl-oligosaccharide glucosidase [Vitis vinifera];; (*SWP) sp|Q13724|MOGS_HUMAN (e_value=4e-21) Mannosyl-oligosaccharide glucosidase OS=Homo sapiens GN=MOGS PE=1 SV=5;; (*TAIR) AT1G67490.1 (e_value=4e-61) | Symbols: GCS1, KNF | glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=852;; (*ITAG) Solyc05g015220.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:10075997-10095708 transcript_region:SL2.40ch05:10075997..10095708- go_terms:GO:0004573,GO:0004558 functional_description:"Mannosyl-oligosaccharide glucosidase (AHRD V1 **** B0WV10_CULQU); contains Interpro domain(s) IPR004888 Glycoside hydrolase, family 63 "; GO:0004573,GO:0004558 NbS00031047g0031.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0.42|0.85|0.66|0.71|7|0|689; (*GB) gi|225465121|ref|XP_002270724.1| (e_value=0.0) PREDICTED: transforming growth factor-beta receptor-associated protein 1 homolog [Vitis vinifera];; (*TAIR) AT1G22860.1 (e_value=0.0) | Symbols: | Vacuolar sorting protein 39 | chr1:8083400-8088867 FORWARD LENGTH=961;; (*ITAG) Solyc05g015210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10037526-10072881 transcript_region:SL2.40ch05:10037526..10072881+ go_terms:GO:0005488 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 **-- TGFA1_MOUSE); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0005488 NbS00031047g0025.1 protein AED:0.31 eAED:0.31 QI:0|0.6|0.5|1|0.6|0.5|6|233|231; (*GB) gi|255564592|ref|XP_002523291.1| (e_value=2e-117) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|A4IG72|TGFA1_DANRE (e_value=6e-12) Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1;; (*TAIR) AT1G22860.1 (e_value=5e-94) | Symbols: | Vacuolar sorting protein 39 | chr1:8083400-8088867 FORWARD LENGTH=961;; (*ITAG) Solyc05g015210.2.1 (e_value=6e-138) genomic_reference:SL2.40ch05 gene_region:10037526-10072881 transcript_region:SL2.40ch05:10037526..10072881+ go_terms:GO:0005488 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 **-- TGFA1_MOUSE); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0005488 NbS00033030g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|89 NbS00033030g0006.1 protein AED:0.01 eAED:0.01 QI:393|0.5|0.66|1|0.5|0.66|3|330|294; (*GB) gi|225430277|ref|XP_002285094.1| (e_value=1e-92) PREDICTED: SPX domain-containing protein 2 isoform 1 [Vitis vinifera];; (*SWP) sp|O48781|SPX2_ARATH (e_value=8e-75) SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1;; (*TAIR) AT2G26660.1 (e_value=6e-76) | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:11338932-11340703 FORWARD LENGTH=287;; (*ITAG) Solyc08g060920.2.1 (e_value=4e-92) genomic_reference:SL2.40ch08 gene_region:42987091-42988595 transcript_region:SL2.40ch08:42987091..42988595+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00047070g0003.1 protein AED:0.06 eAED:0.06 QI:181|1|1|1|0|0|3|299|230; (*GB) gi|225426249|ref|XP_002264149.1| (e_value=2e-45) PREDICTED: RING-H2 zinc finger protein RHA4a [Vitis vinifera];; (*SWP) sp|Q84TF5|RHA4A_ARATH (e_value=7e-37) RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1;; (*TAIR) AT4G24015.1 (e_value=5e-38) | Symbols: | RING/U-box superfamily protein | chr4:12469887-12471197 REVERSE LENGTH=174;; (*ITAG) Solyc08g082680.2.1 (e_value=2e-83) genomic_reference:SL2.40ch08 gene_region:62552444-62554475 transcript_region:SL2.40ch08:62552444..62554475- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00001762g0006.1 protein AED:0.40 eAED:0.40 QI:0|1|0.75|1|1|1|4|0|253; (*GB) gi|225459417|ref|XP_002285821.1| (e_value=3e-96) PREDICTED: uncharacterized protein LOC100250529 [Vitis vinifera];; (*TAIR) AT1G77930.2 (e_value=3e-94) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:29301184-29302467 FORWARD LENGTH=271;; (*ITAG) Solyc12g056850.1.1 (e_value=5e-147) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48273050-48277117 transcript_region:SL2.40ch12:48273050..48277117- go_terms:GO:0031072 functional_description:"Co-chaperone protein DnaJ (AHRD V1 *-*- A7I1Z6_CAMHC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00001762g0009.1 protein AED:0.28 eAED:0.29 QI:7|0.62|0.55|1|0.75|0.55|9|0|398; (*GB) gi|302141894|emb|CBI19097.3| (e_value=2e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZM3|PPCS2_ARATH (e_value=7e-129) Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2;; (*TAIR) AT1G12350.1 (e_value=1e-127) | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine synthetase | chr1:4198870-4200633 FORWARD LENGTH=317;; (*ITAG) Solyc12g056840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48269504-48272374 transcript_region:SL2.40ch12:48269504..48272374+ functional_description:"Phosphopantothenate--cysteine ligase (AHRD V1 **-- B6TMK9_MAIZE); contains Interpro domain(s) IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal "; NbS00028472g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|1|1|3|0|497; (*GB) gi|147858961|emb|CAN80826.1| (e_value=0.0) hypothetical protein VITISV_015453 [Vitis vinifera];; (*SWP) sp|Q9DE27|RUVB2_XENLA (e_value=0.0) RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1;; (*TAIR) AT5G67630.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:26967535-26969306 REVERSE LENGTH=469;; (*ITAG) Solyc03g032070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8863457-8866419 transcript_region:SL2.40ch03:8863457..8866419- go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00033501g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|114; (*ITAG) Solyc11g039970.1.1 (e_value=8e-53) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006615g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.71|1|0.83|0.85|7|0|514; (*GB) gi|225455108|ref|XP_002268615.1| (e_value=0.0) PREDICTED: O-acyltransferase WSD1 [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=4e-125) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT5G53390.1 (e_value=3e-171) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:21656951-21659207 REVERSE LENGTH=486;; (*ITAG) Solyc03g083380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46776786-46780622 transcript_region:SL2.40ch03:46776786..46780622+ go_terms:GO:0045261 functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- A5UWY0_ROSS1); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; GO:0045261 NbS00012108g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|337; (*GB) gi|255553923|ref|XP_002518002.1| (e_value=4e-102) r2r3-myb transcription factor, putative [Ricinus communis];; (*SWP) sp|O49608|MYB32_ARATH (e_value=5e-67) Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1;; (*TAIR) AT4G28110.1 (e_value=4e-89) | Symbols: AtMYB41, MYB41 | myb domain protein 41 | chr4:13968166-13969384 REVERSE LENGTH=282;; (*ITAG) Solyc07g054840.2.1 (e_value=5e-141) genomic_reference:SL2.40ch07 gene_region:60342649-60343892 transcript_region:SL2.40ch07:60342649..60343892+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6R077_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00005467g0009.1 protein AED:0.26 eAED:0.26 QI:187|1|0.83|1|1|1|6|0|235; (*GB) gi|225462464|ref|XP_002269484.1| (e_value=5e-103) PREDICTED: bidirectional sugar transporter SWEET2a [Vitis vinifera];; (*SWP) sp|Q5JJY5|SWT2A_ORYSJ (e_value=5e-88) Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. japonica GN=SWEET2A PE=2 SV=1;; (*TAIR) AT3G14770.1 (e_value=1e-88) | Symbols: SWEET2, AtSWEET2 | Nodulin MtN3 family protein | chr3:4957787-4959202 REVERSE LENGTH=236;; (*ITAG) Solyc02g071520.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:35495695-35498922 transcript_region:SL2.40ch02:35495695..35498922- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DICDI); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00005467g0005.1 protein AED:0.69 eAED:0.77 QI:0|0|0|0.4|1|1|5|0|300; (*ITAG) Solyc01g059760.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00034945g0005.1 protein AED:0.16 eAED:0.19 QI:69|1|0.84|1|0.83|0.84|13|484|617; (*GB) gi|359487909|ref|XP_003633673.1| (e_value=0.0) PREDICTED: protein MON2 homolog [Vitis vinifera];; (*SWP) sp|Q9VLT1|MON2_DROME (e_value=1e-23) Protein MON2 homolog OS=Drosophila melanogaster GN=mon2 PE=2 SV=4;; (*TAIR) AT5G27970.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:10004720-10015429 FORWARD LENGTH=1630;; (*ITAG) Solyc09g018370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14517641-14547669 transcript_region:SL2.40ch09:14517641..14547669+ go_terms:GO:0005488 functional_description:"Protein MON2 homolog (AHRD V1 *--- MON2_DROPS); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00051376g0001.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|116490059|gb|ABJ98930.1| (e_value=1e-18) NIMIN2c protein [Nicotiana tabacum];; (*ITAG) Solyc03g119590.1.1 (e_value=5e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62207834-62208169 transcript_region:SL2.40ch03:62207834..62208169+ functional_description:"NIMIN2c protein (AHRD V1 ***- A0FJY4_TOBAC)"; NbS00049940g0003.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|1|1|3|0|512; (*GB) gi|218193789|gb|EEC76216.1| (e_value=0.0) hypothetical protein OsI_13615 [Oryza sativa Indica Group];; (*SWP) sp|Q9SJT0|Y2214_ARATH (e_value=2e-155) Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1;; (*TAIR) AT2G21480.1 (e_value=1e-156) | Symbols: | Malectin/receptor-like protein kinase family protein | chr2:9202753-9205368 REVERSE LENGTH=871;; (*ITAG) Solyc01g109950.2.1 (e_value=5e-180) genomic_reference:SL2.40ch01 gene_region:88534564-88537518 transcript_region:SL2.40ch01:88534564..88537518+ go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00016628g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|147777381|emb|CAN67198.1| (e_value=2e-40) hypothetical protein VITISV_001853 [Vitis vinifera];; (*ITAG) Solyc07g008930.1.1 (e_value=2e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:3935838-3936437 transcript_region:SL2.40ch07:3935838..3936437- functional_description:"Unknown Protein (AHRD V1)"; NbS00007330g0008.1 protein AED:0.34 eAED:0.39 QI:0|0|0|0.6|0.75|0.4|5|0|610; (*GB) gi|224135109|ref|XP_002327568.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=2e-33) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT1G65920.1 (e_value=1e-141) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:24525267-24529204 REVERSE LENGTH=1006;; (*ITAG) Solyc02g081250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00007330g0007.1 protein AED:0.44 eAED:0.63 QI:0|0|0|0.62|0.57|0.5|8|0|330; (*GB) gi|147857410|emb|CAN82853.1| (e_value=4e-52) hypothetical protein VITISV_028768 [Vitis vinifera];; (*TAIR) AT1G65920.1 (e_value=1e-45) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:24525267-24529204 REVERSE LENGTH=1006;; (*ITAG) Solyc02g036390.1.1 (e_value=7e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:21397954-21401865 transcript_region:SL2.40ch02:21397954..21401865+ go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbS00012766g0010.1 protein AED:0.13 eAED:0.13 QI:337|0.89|0.95|1|1|1|20|689|874; (*GB) gi|350537913|ref|NP_001234317.1| (e_value=0.0) TBG6 protein precursor [Solanum lycopersicum];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=0.0) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.1 (e_value=0.0) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=856;; (*ITAG) Solyc02g084720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42396478-42402602 transcript_region:SL2.40ch02:42396478..42402602- go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9LLS9_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin "; GO:0005515 NbS00012766g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|334; (*GB) gi|350534726|ref|NP_001234668.1| (e_value=0.0) galactinol synthase [Solanum lycopersicum];; (*SWP) sp|Q9LSB1|GUX1_ARATH (e_value=1e-13) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1;; (*TAIR) AT2G47180.1 (e_value=0.0) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc02g084980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42590167-42591767 transcript_region:SL2.40ch02:42590167..42591767- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- C7G304_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00012766g0011.1 protein AED:0.26 eAED:0.26 QI:157|1|1|1|1|1|3|265|99; (*GB) gi|586099|sp|Q07090.1|TRXH2_TOBAC (e_value=7e-59) RecName: Full=Thioredoxin H-type 2; Short=Trx-H2;; (*SWP) sp|Q07090|TRXH2_TOBAC (e_value=2e-60) Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G51030.1 (e_value=2e-45) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc02g084710.2.1 (e_value=5e-57) genomic_reference:SL2.40ch02 gene_region:42394410-42396096 transcript_region:SL2.40ch02:42394410..42396096+ go_terms:GO:0045454 functional_description:"Thioredoxin h1 (AHRD V1 ***- A8HTK0_SOYBN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00002201g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|890; (*GB) gi|359490053|ref|XP_003634022.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O65567|PP342_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2;; (*TAIR) AT4G30825.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15009605-15012319 FORWARD LENGTH=904;; (*ITAG) Solyc07g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:786504-789904 transcript_region:SL2.40ch07:786504..789904- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBL7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002201g0002.1 protein AED:0.26 eAED:0.28 QI:0|0.9|0.72|1|1|1|11|0|453; (*GB) gi|356559428|ref|XP_003548001.1| (e_value=0.0) PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Glycine max];; (*SWP) sp|Q9LX65|VATH_ARATH (e_value=0.0) V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1;; (*TAIR) AT3G42050.1 (e_value=0.0) | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441;; (*ITAG) Solyc07g005940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:776212-784540 transcript_region:SL2.40ch07:776212..784540- go_terms:GO:0005515 functional_description:"Vacuolar ATPase subunit H protein (AHRD V1 ***- B6SIW6_MAIZE); contains Interpro domain(s) IPR004908 ATPase, V1 complex, subunit H "; GO:0005515 NbS00002201g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.94|0.95|1|0.94|0.9|20|700|1046; (*GB) gi|88933967|sp|Q8L6J1.2|RPO3B_TOBAC (e_value=0.0) RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName: Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3B; Flags: Precursor;; (*SWP) sp|Q8L6J1|RPO3B_TOBAC (e_value=0.0) DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2;; (*TAIR) AT2G24120.1 (e_value=0.0) | Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10249358-10254530 REVERSE LENGTH=993;; (*ITAG) Solyc07g005930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:764089-775345 transcript_region:SL2.40ch07:764089..775345+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9IMA6_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00020571g0001.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|213; (*GB) gi|359473188|ref|XP_003631260.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100852726 [Vitis vinifera];; (*TAIR) AT1G70420.1 (e_value=1e-29) | Symbols: | Protein of unknown function (DUF1645) | chr1:26539840-26540658 REVERSE LENGTH=272;; (*ITAG) Solyc05g005260.1.1 (e_value=1e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:208914-209765 transcript_region:SL2.40ch05:208914..209765- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00019142g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.55|0.4|1|0.88|0.8|10|0|560; (*GB) gi|297734943|emb|CBI17177.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P21239|RUB1_BRANA (e_value=0.0) RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2;; (*TAIR) AT2G28000.1 (e_value=0.0) | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha | chr2:11926603-11929184 FORWARD LENGTH=586;; (*ITAG) Solyc06g075010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42927697-42932331 transcript_region:SL2.40ch06:42927697..42932331- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00019142g0012.1 protein AED:0.01 eAED:0.01 QI:313|1|1|1|1|1|3|391|169; (*GB) gi|297746213|emb|CBI16269.3| (e_value=1e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|O32472|PHAJ_AERPU (e_value=5e-24) (R)-specific enoyl-CoA hydratase OS=Aeromonas punctata GN=phaJ PE=1 SV=1;; (*TAIR) AT5G60335.1 (e_value=1e-57) | Symbols: | Thioesterase superfamily protein | chr5:24273879-24274551 REVERSE LENGTH=166;; (*ITAG) Solyc06g075000.2.1 (e_value=9e-85) genomic_reference:SL2.40ch06 gene_region:42926032-42927908 transcript_region:SL2.40ch06:42926032..42927908+ go_terms:GO:0008152 functional_description:"MaoC-like dehydratase (AHRD V1 ***- A8JHQ8_CHLRE); contains Interpro domain(s) IPR002539 MaoC-like dehydratase "; GO:0008152 NbS00019142g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.68|0.93|0.73|0.87|16|1750|697; (*GB) gi|224072546|ref|XP_002303777.1| (e_value=2e-115) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9FF46|AB28G_ARATH (e_value=3e-109) ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1;; (*TAIR) AT5G60740.1 (e_value=3e-110) | Symbols: | ABC transporter family protein | chr5:24425824-24430269 REVERSE LENGTH=1109;; (*ITAG) Solyc06g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42933238-42941877 transcript_region:SL2.40ch06:42933238..42941877+ go_terms:GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 28 (AHRD V1 ***- AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00020561g0001.1 protein AED:0.17 eAED:0.18 QI:303|0.66|0.75|1|0|0.25|4|0|292; (*GB) gi|224142557|ref|XP_002324622.1| (e_value=4e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q09749|ADRL_SCHPO (e_value=5e-44) ADIPOR-like receptor spbc12c2.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC12C2.09c PE=2 SV=1;; (*TAIR) AT5G20270.1 (e_value=1e-96) | Symbols: HHP1 | heptahelical transmembrane protein1 | chr5:6841025-6842656 REVERSE LENGTH=332;; (*ITAG) Solyc12g009680.1.1 (e_value=2e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2936300-2938988 transcript_region:SL2.40ch12:2936300..2938988- go_terms:GO:0016021 functional_description:"Adiponectin receptor protein 2 (AHRD V1 ***- B0W6M8_CULQU); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0016021 NbS00039302g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|1|1|2|435|174; (*GB) gi|416649|sp|Q03662.1|GSTX1_TOBAC (e_value=3e-77) RecName: Full=Probable glutathione S-transferase; AltName: Full=Auxin-induced protein PGNT1/PCNT110;; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=8e-79) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-46) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011640.2.1 (e_value=5e-87) genomic_reference:SL2.40ch09 gene_region:4893328-4894820 transcript_region:SL2.40ch09:4893328..4894820+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00034807g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.57|0.85|0.66|0.57|7|0|246; (*GB) gi|4138265|emb|CAA06925.1| (e_value=2e-164) Avr9 elicitor response protein [Nicotiana tabacum];; (*SWP) sp|Q6NQB7|B3GT7_ARATH (e_value=8e-149) Beta-1,3-galactosyltransferase 7 OS=Arabidopsis thaliana GN=B3GALT7 PE=2 SV=1;; (*TAIR) AT1G77810.2 (e_value=4e-153) | Symbols: | Galactosyltransferase family protein | chr1:29260899-29263001 REVERSE LENGTH=384;; (*ITAG) Solyc11g013490.1.1 (e_value=5e-168) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6543160-6549507 transcript_region:SL2.40ch11:6543160..6549507+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbC26121602g0003.1 protein AED:0.23 eAED:0.35 QI:0|0|0|1|1|1|3|0|279; (*GB) gi|357454855|ref|XP_003597708.1| (e_value=3e-57) hypothetical protein MTR_2g101430 [Medicago truncatula];; (*TAIR) AT1G51080.1 (e_value=4e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr1:18929883-18930740 REVERSE LENGTH=285;; (*ITAG) Solyc01g102860.2.1 (e_value=6e-87) genomic_reference:SL2.40ch01 gene_region:83303739-83304848 transcript_region:SL2.40ch01:83303739..83304848+ functional_description:"Unknown Protein (AHRD V1)"; NbC26121602g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|93; (*GB) gi|255546123|ref|XP_002514121.1| (e_value=1e-15) valacyclovir hydrolase, putative [Ricinus communis];; (*TAIR) AT3G47590.1 (e_value=3e-15) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17536133-17537515 REVERSE LENGTH=309;; (*ITAG) Solyc07g039510.2.1 (e_value=6e-21) genomic_reference:SL2.40ch07 gene_region:44941343-44948351 transcript_region:SL2.40ch07:44941343..44948351- go_terms:GO:0003824 functional_description:"Esterase/lipase/thioesterase (Fragment) (AHRD V1 **-- B3VW47_POPTN); contains Interpro domain(s) IPR013744 Protein of unknown function DUF1749 "; GO:0003824 NbS00039328g0003.1 protein AED:0.02 eAED:0.02 QI:184|1|0.5|1|1|1|2|0|324; (*GB) gi|297736235|emb|CBI24873.3| (e_value=1e-122) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=1e-95) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT3G57670.1 (e_value=2e-112) | Symbols: NTT, WIP2 | C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383;; (*ITAG) Solyc01g087050.2.1 (e_value=1e-140) genomic_reference:SL2.40ch01 gene_region:73730914-73735095 transcript_region:SL2.40ch01:73730914..73735095- go_terms:GO:0003700 functional_description:"Zinc finger-like protein (AHRD V1 **-- Q9LT33_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00002185g0003.1 protein AED:0.11 eAED:0.15 QI:25|0.75|0.88|1|0.5|0.44|9|289|415; (*GB) gi|224063203|ref|XP_002301039.1| (e_value=2e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=2e-91) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1;; (*TAIR) AT1G22170.1 (e_value=2e-140) | Symbols: | Phosphoglycerate mutase family protein | chr1:7826603-7828055 FORWARD LENGTH=334;; (*ITAG) Solyc04g054820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52438014-52442516 transcript_region:SL2.40ch04:52438014..52442516+ go_terms:GO:0046538 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 "; GO:0046538 NbS00030240g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|195; (*GB) gi|225453046|ref|XP_002267312.1| (e_value=7e-92) PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera];; (*TAIR) AT5G28490.1 (e_value=3e-80) | Symbols: LSH1 | Protein of unknown function (DUF640) | chr5:10454541-10455113 REVERSE LENGTH=190;; (*ITAG) Solyc05g055020.2.1 (e_value=3e-113) genomic_reference:SL2.40ch05 gene_region:63942586-63944841 transcript_region:SL2.40ch05:63942586..63944841- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00016307g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|211 NbS00016307g0009.1 protein AED:0.46 eAED:0.46 QI:764|0.5|0.33|0.66|0.5|0.33|3|0|99 NbS00016307g0011.1 protein AED:0.51 eAED:0.87 QI:53|0|0|1|0|0|2|0|68 NbS00016307g0105.1 protein AED:0.11 eAED:0.11 QI:0|0.92|0.8|1|0.85|0.93|15|0|1330 NbS00016307g0228.1 protein AED:0.24 eAED:0.24 QI:187|1|1|1|0.85|0.75|8|405|210 NbS00016307g0223.1 protein AED:0.25 eAED:0.25 QI:321|0.75|0.66|1|0.87|0.77|9|0|626 NbS00016307g0227.1 protein AED:0.20 eAED:0.28 QI:0|0.16|0|1|0.33|0.42|7|0|389 NbS00016307g0224.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|1|1|2|0|158 NbS00016307g0226.1 protein AED:0.58 eAED:0.68 QI:0|0|0|0.66|0|0.33|3|0|75 NbS00016307g0213.1 protein AED:0.39 eAED:0.39 QI:333|0.83|0.84|0.92|0.41|0.61|13|0|414 NbS00030593g0003.1 protein AED:0.27 eAED:0.49 QI:0|0|0|0.83|0.8|0.83|6|0|291; (*GB) gi|302143479|emb|CBI22040.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H184|PT106_ARATH (e_value=4e-34) Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1;; (*TAIR) AT1G06470.2 (e_value=3e-35) | Symbols: | Nucleotide/sugar transporter family protein | chr1:1970726-1973540 FORWARD LENGTH=414;; (*ITAG) Solyc12g010990.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3849994-3854459 transcript_region:SL2.40ch12:3849994..3854459- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (AHRD V1 **-- C9SII9_VERA1); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00023695g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|147846530|emb|CAN81654.1| (e_value=0.0) hypothetical protein VITISV_003756 [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-121) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30760.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr1:10918321-10920441 FORWARD LENGTH=534;; (*ITAG) Solyc09g072660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60769532-60771866 transcript_region:SL2.40ch09:60769532..60771866- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFP2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00023695g0007.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|2|0|75; (*ITAG) Solyc09g072660.2.1 (e_value=1e-20) genomic_reference:SL2.40ch09 gene_region:60769532-60771866 transcript_region:SL2.40ch09:60769532..60771866- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFP2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00032829g0005.1 protein AED:0.09 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|110 NbS00032829g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|194; (*ITAG) Solyc06g016790.1.1 (e_value=2e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:9949225-9949710 transcript_region:SL2.40ch06:9949225..9949710- functional_description:"Unknown Protein (AHRD V1)"; NbS00026614g0001.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|1|1|3|0|431; (*GB) gi|359487487|ref|XP_002269067.2| (e_value=7e-96) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=1e-41) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=3e-40) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc11g005630.1.1 (e_value=7e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:483096-485429 transcript_region:SL2.40ch11:483096..485429+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00026614g0003.1 protein AED:0.22 eAED:0.26 QI:2|-1|0|1|-1|0|1|0|406; (*ITAG) Solyc01g073980.1.1 (e_value=8e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00026614g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|185; (*GB) gi|56544480|gb|AAV92905.1| (e_value=3e-98) Avr9/Cf-9 rapidly elicited protein 256, partial [Nicotiana tabacum];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=7e-53) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=5e-54) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006520.2.1 (e_value=2e-57) genomic_reference:SL2.40ch01 gene_region:1099482-1102806 transcript_region:SL2.40ch01:1099482..1102806+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00013277g0015.1 protein AED:0.31 eAED:0.31 QI:0|0.64|0.6|0.93|0.71|0.66|15|0|552; (*GB) gi|255553695|ref|XP_002517888.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|P36096|TUL1_YEAST (e_value=2e-19) Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1;; (*TAIR) AT4G28370.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:14035016-14039122 FORWARD LENGTH=562;; (*ITAG) Solyc07g053850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59578302-59588911 transcript_region:SL2.40ch07:59578302..59588911- go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *--- B9PQV1_TOXGO); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00013277g0014.1 protein AED:0.04 eAED:0.07 QI:470|0.66|0.25|1|0.33|0|4|0|176; (*GB) gi|147802592|emb|CAN66307.1| (e_value=4e-98) hypothetical protein VITISV_009087 [Vitis vinifera];; (*SWP) sp|P31691|ADT_ORYSJ (e_value=7e-96) ADP,ATP carrier protein, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0718900 PE=2 SV=1;; (*TAIR) AT4G28390.1 (e_value=1e-95) | Symbols: AAC3, ATAAC3 | ADP/ATP carrier 3 | chr4:14041486-14042781 REVERSE LENGTH=379;; (*ITAG) Solyc07g053830.2.1 (e_value=1e-103) genomic_reference:SL2.40ch07 gene_region:59571961-59574722 transcript_region:SL2.40ch07:59571961..59574722+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00013277g0011.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|255; (*GB) gi|356544984|ref|XP_003540926.1| (e_value=2e-69) PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3-like [Glycine max];; (*SWP) sp|Q9LJ64|PLRX1_ARATH (e_value=2e-54) Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1;; (*TAIR) AT4G28380.1 (e_value=3e-67) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:14039756-14040931 REVERSE LENGTH=391;; (*ITAG) Solyc07g053840.1.1 (e_value=8e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59575435-59576559 transcript_region:SL2.40ch07:59575435..59576559+ go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00013277g0012.1 protein AED:0.50 eAED:0.60 QI:0|0|0|1|0|0|2|0|65; (*GB) gi|255553693|ref|XP_002517887.1| (e_value=1e-17) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*TAIR) AT4G28380.1 (e_value=1e-15) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:14039756-14040931 REVERSE LENGTH=391;; (*ITAG) Solyc07g053840.1.1 (e_value=4e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59575435-59576559 transcript_region:SL2.40ch07:59575435..59576559+ go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00056968g0003.1 protein AED:0.17 eAED:0.17 QI:175|1|1|1|1|1|7|0|288; (*GB) gi|18411340|ref|NP_565148.1| (e_value=2e-138) putative carboxyvinyl-carboxyphosphonate phosphorylmutase [Arabidopsis thaliana];; (*SWP) sp|O49290|CPPM_ARATH (e_value=6e-140) Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=1 SV=2;; (*TAIR) AT1G77060.1 (e_value=4e-141) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr1:28951804-28953449 REVERSE LENGTH=339;; (*ITAG) Solyc05g056270.2.1 (e_value=6e-41) genomic_reference:SL2.40ch05 gene_region:64763836-64771346 transcript_region:SL2.40ch05:64763836..64771346+ go_terms:GO:0008152,GO:0003824 functional_description:"Isocitrate lyase (AHRD V1 *-*- Q2TWG5_ASPOR); contains Interpro domain(s) IPR000918 Isocitrate lyase and phosphorylmutase "; GO:0008152,GO:0003824 NbC24906815g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|224054276|ref|XP_002298179.1| (e_value=6e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64090.1 (e_value=6e-46) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25648069-25649415 FORWARD LENGTH=448;; (*ITAG) Solyc10g047210.1.1 (e_value=1e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35670364-35670867 transcript_region:SL2.40ch10:35670364..35670867+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018619 Hyccin "; NbS00056254g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.83|0.76|1|0.91|0.84|13|0|919; (*GB) gi|255576609|ref|XP_002529195.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G72390.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325;; (*ITAG) Solyc06g063010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36164201-36174916 transcript_region:SL2.40ch06:36164201..36174916+ functional_description:"At1g72390-like protein (Fragment) (AHRD V1 *-*- C0JD42_9BRAS)"; NbS00056254g0005.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|255576609|ref|XP_002529195.1| (e_value=2e-15) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G72390.1 (e_value=4e-12) | Symbols: | CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). | chr1:27245455-27251218 FORWARD LENGTH=1325; NbS00011836g0001.1 protein AED:0.55 eAED:0.58 QI:0|0|0|0.5|1|1|4|0|118 NbS00018614g0009.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|255; (*GB) gi|237664619|gb|ACR09748.1| (e_value=2e-106) DIV3B protein [Heptacodium miconioides];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=4e-15) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=5e-85) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc10g076820.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59113467-59114847 transcript_region:SL2.40ch10:59113467..59114847+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00025352g0005.1 protein AED:0.35 eAED:0.36 QI:103|0.9|0.90|1|0.6|0.72|11|0|374; (*GB) gi|225429638|ref|XP_002279687.1| (e_value=0.0) PREDICTED: omega-amidase NIT2-like [Vitis vinifera];; (*SWP) sp|Q497B0|NIT2_RAT (e_value=2e-109) Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1;; (*TAIR) AT5G12040.1 (e_value=0.0) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc08g062190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47875449-47889419 transcript_region:SL2.40ch08:47875449..47889419- go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00014672g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.71|1|0.66|0.71|7|0|369; (*GB) gi|359484870|ref|XP_002273046.2| (e_value=1e-150) PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera];; (*SWP) sp|Q94AN4|AP2L1_ARATH (e_value=9e-97) AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1;; (*TAIR) AT1G16060.1 (e_value=7e-98) | Symbols: ADAP | ARIA-interacting double AP2 domain protein | chr1:5508563-5511609 FORWARD LENGTH=345;; (*ITAG) Solyc12g010490.1.1 (e_value=5e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3501040-3504574 transcript_region:SL2.40ch12:3501040..3504574+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00061129g0003.1 protein AED:0.05 eAED:0.16 QI:0|0|0|1|0|0|2|0|347; (*GB) gi|186504431|ref|NP_001118422.1| (e_value=3e-11) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT2G30990.3 (e_value=7e-14) | Symbols: | Protein of unknown function (DUF688) | chr2:13187776-13189761 REVERSE LENGTH=563;; (*ITAG) Solyc12g013960.1.1 (e_value=1e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4785891-4788385 transcript_region:SL2.40ch12:4785891..4788385- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00011805g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|1617197|emb|CAA96569.1| (e_value=1e-57) CP12 [Nicotiana tabacum];; (*SWP) sp|Q9LZP9|CP122_ARATH (e_value=2e-39) Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1;; (*TAIR) AT3G62410.1 (e_value=2e-40) | Symbols: CP12-2, CP12 | CP12 domain-containing protein 2 | chr3:23091006-23091401 FORWARD LENGTH=131;; (*ITAG) Solyc06g009630.1.1 (e_value=3e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:3584164-3584547 transcript_region:SL2.40ch06:3584164..3584547+ go_terms:GO:0005515 functional_description:"CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12 "; GO:0005515 NbS00011805g0009.1 protein AED:0.23 eAED:0.23 QI:52|0.62|0.77|1|0.5|0.55|9|269|459; (*GB) gi|18307504|emb|CAD21166.1| (e_value=0.0) SDL-1 protein [Nicotiana plumbaginifolia];; (*TAIR) AT3G08550.1 (e_value=0.0) | Symbols: ELD1, ABI8, KOB1 | elongation defective 1 protein / ELD1 protein | chr3:2596513-2599515 FORWARD LENGTH=533;; (*ITAG) Solyc01g068200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69684919-69691559 transcript_region:SL2.40ch01:69684919..69691559- functional_description:"Abscisic acid insensitive 8 homologue (Fragment) (AHRD V1 *--- A5A6Q3_TRIMO)"; NbS00059667g0011.1 protein AED:0.03 eAED:0.03 QI:534|1|1|1|0.57|0.62|8|470|477; (*GB) gi|224133786|ref|XP_002327680.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G75420.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:28305469-28307317 FORWARD LENGTH=463;; (*ITAG) Solyc02g084820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42488981-42494223 transcript_region:SL2.40ch02:42488981..42494223+ go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** B5WGB2_9BURK); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00059667g0002.1 protein AED:0.15 eAED:0.26 QI:0|0|0|1|1|1|5|0|622; (*GB) gi|225431281|ref|XP_002268784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g44230-like [Vitis vinifera];; (*SWP) sp|Q9FFG8|PP417_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1;; (*TAIR) AT5G44230.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17814336-17816309 FORWARD LENGTH=657;; (*ITAG) Solyc02g084830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42494623-42496760 transcript_region:SL2.40ch02:42494623..42496760+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MN15_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00059667g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0|0.5|2|224|160; (*GB) gi|46020012|dbj|BAD13498.1| (e_value=7e-29) dehydrin [Nicotiana tabacum];; (*ITAG) Solyc02g084840.2.1 (e_value=5e-20) genomic_reference:SL2.40ch02 gene_region:42498653-42499621 transcript_region:SL2.40ch02:42498653..42499621- go_terms:GO:0009415 functional_description:"Dehydrin DHN1 (AHRD V1 *-*- DHN1_PEA); contains Interpro domain(s) IPR000167 Dehydrin "; GO:0009415 NbS00014207g0006.1 protein AED:0.21 eAED:0.21 QI:241|0.8|0.90|1|0.9|0.81|11|65|520; (*GB) gi|119866035|gb|ABM05487.1| (e_value=0.0) Impa1 [Nicotiana benthamiana];; (*SWP) sp|O22478|IMA_SOLLC (e_value=0.0) Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2;; (*TAIR) AT3G06720.2 (e_value=0.0) | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532;; (*ITAG) Solyc06g009750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3705492-3711608 transcript_region:SL2.40ch06:3705492..3711608+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR002652 Importin-alpha-like, importin-beta-binding region IPR000225 Armadillo IPR011989 Armadillo-like helical "; GO:0008320 NbS00018044g0007.1 protein AED:0.02 eAED:0.02 QI:298|0.5|0.66|1|1|1|3|454|539; (*GB) gi|225439832|ref|XP_002277467.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620 [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=0.0) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc09g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:602117-604953 transcript_region:SL2.40ch09:602117..604953+ go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00018044g0008.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|316; (*GB) gi|255571701|ref|XP_002526794.1| (e_value=5e-70) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80624|MAKR4_ARATH (e_value=2e-36) Probable membrane-associated kinase regulator 4 OS=Arabidopsis thaliana GN=MAKR4 PE=2 SV=1;; (*TAIR) AT2G39370.1 (e_value=2e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:16444280-16445266 REVERSE LENGTH=328;; (*ITAG) Solyc09g005880.1.1 (e_value=7e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:612326-613684 transcript_region:SL2.40ch09:612326..613684- functional_description:"Unknown Protein (AHRD V1)"; NbS00015424g0007.1 protein AED:0.34 eAED:0.65 QI:0|0|0|0.5|1|1|4|0|101 NbS00058525g0008.1 protein AED:0.17 eAED:0.17 QI:24|0.91|0.76|1|0.5|0.69|13|79|477; (*GB) gi|302143176|emb|CBI20471.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FIU7|BGL41_ARATH (e_value=0.0) Putative beta-glucosidase 41 OS=Arabidopsis thaliana GN=BGLU41 PE=3 SV=2;; (*TAIR) AT5G54570.1 (e_value=0.0) | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235 REVERSE LENGTH=535;; (*ITAG) Solyc07g063880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63455926-63459903 transcript_region:SL2.40ch07:63455926..63459903- go_terms:GO:0017134 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0017134 NbS00058525g0007.1 protein AED:0.17 eAED:0.17 QI:147|1|1|1|1|1|4|693|329; (*GB) gi|224115154|ref|XP_002316956.1| (e_value=1e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54540.1 (e_value=9e-33) | Symbols: | Uncharacterised conserved protein (UCP012943) | chr5:22156604-22157857 FORWARD LENGTH=297;; (*ITAG) Solyc07g063870.2.1 (e_value=2e-105) genomic_reference:SL2.40ch07 gene_region:63452650-63456122 transcript_region:SL2.40ch07:63452650..63456122+ functional_description:"AT5g54540/MRB17_4 (AHRD V1 *-*- Q9FIV0_ARATH)"; NbS00024857g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0.5|1|0|0.5|2|472|433; (*GB) gi|225465641|ref|XP_002270476.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g08305-like [Vitis vinifera];; (*SWP) sp|P0C8Q7|PP369_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1;; (*TAIR) AT5G08305.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:2670134-2671738 REVERSE LENGTH=534;; (*ITAG) Solyc04g009210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2700811-2702490 transcript_region:SL2.40ch04:2700811..2702490+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00024857g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|362|871; (*GB) gi|302594419|gb|ADL59399.1| (e_value=0.0) HJTR2GH1 protein [Solanum hjertingii];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=5e-142) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=4e-143) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g009290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2735950-2738484 transcript_region:SL2.40ch04:2735950..2738484- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00009520g0009.1 protein AED:0.23 eAED:0.24 QI:0|0.83|0.71|1|1|1|7|172|526; (*GB) gi|225461612|ref|XP_002282987.1| (e_value=0.0) PREDICTED: uncharacterized protein ycf45 [Vitis vinifera];; (*SWP) sp|P51281|YCF45_PORPU (e_value=2e-129) Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1;; (*TAIR) AT1G73170.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27511722-27514783 REVERSE LENGTH=666;; (*ITAG) Solyc12g014150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4979762-4989302 transcript_region:SL2.40ch12:4979762..4989302+ go_terms:GO:0005524,GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- C7QND6_CYAP0); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00009520g0002.1 protein AED:0.19 eAED:0.54 QI:381|0|0|0.66|1|1|3|0|184; (*GB) gi|224116698|ref|XP_002317369.1| (e_value=3e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73160.1 (e_value=3e-80) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:27506534-27507994 FORWARD LENGTH=486;; (*ITAG) Solyc08g074970.1.1 (e_value=1e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56269563-56271008 transcript_region:SL2.40ch08:56269563..56271008- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 **** A9B8A9_HERA2); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00001766g0014.1 protein AED:0.29 eAED:0.30 QI:593|0.42|0.37|0.87|0.14|0.12|8|0|405; (*GB) gi|225437241|ref|XP_002275598.1| (e_value=1e-175) PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=3e-122) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=2e-123) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc09g065990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59852201-59862983 transcript_region:SL2.40ch09:59852201..59862983+ go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00001766g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.4|1|1|5|0|309; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=1e-128) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=4e-130) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=2e-122) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=8e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00001766g0011.1 protein AED:0.60 eAED:0.78 QI:36|0.33|0|0.75|0.33|1|4|0|134; (*GB) gi|225432908|ref|XP_002284188.1| (e_value=2e-31) PREDICTED: magnesium transporter MRS2-I isoform 2 [Vitis vinifera];; (*SWP) sp|B8AJT9|MRS2I_ORYSI (e_value=3e-30) Magnesium transporter MRS2-I OS=Oryza sativa subsp. indica GN=MRS2-I PE=3 SV=1;; (*TAIR) AT5G09690.4 (e_value=8e-28) | Symbols: ATMGT7, MGT7, MRS2-7 | magnesium transporter 7 | chr5:3000990-3003169 REVERSE LENGTH=371;; (*ITAG) Solyc09g065920.2.1 (e_value=3e-45) genomic_reference:SL2.40ch09 gene_region:59804797-59809555 transcript_region:SL2.40ch09:59804797..59809555+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-I (AHRD V1 **** MRS2I_ORYSJ); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00019647g0003.1 protein AED:0.49 eAED:0.49 QI:0|0.4|0|0.83|0.6|0.66|6|90|125; (*GB) gi|90657631|gb|ABD96929.1| (e_value=7e-35) hypothetical protein [Cleome spinosa];; (*TAIR) AT3G02220.1 (e_value=2e-33) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:412210-413536 REVERSE LENGTH=227;; (*ITAG) Solyc02g089100.2.1 (e_value=3e-42) genomic_reference:SL2.40ch02 gene_region:45574034-45577409 transcript_region:SL2.40ch02:45574034..45577409+ functional_description:"C9orf85 homolog (AHRD V1 *-*- C1BVG8_9MAXI); contains Interpro domain(s) IPR019351 Protein of unknown function DUF2039 "; NbC25413957g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|300; (*GB) gi|225444926|ref|XP_002279655.1| (e_value=4e-151) PREDICTED: uncharacterized protein LOC100255927 [Vitis vinifera];; (*TAIR) AT2G44020.1 (e_value=2e-148) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:18217737-18219260 REVERSE LENGTH=507;; (*ITAG) Solyc11g017050.1.1 (e_value=4e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7847836-7849332 transcript_region:SL2.40ch11:7847836..7849332+ functional_description:"Mitochondrial transcription termination factor (AHRD V1 **-- D8WKY3_TRITU); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017368g0001.1 protein AED:0.39 eAED:0.73 QI:0|0|0|1|0|0|4|0|89; (*GB) gi|225455334|ref|XP_002276578.1| (e_value=3e-20) PREDICTED: trafficking protein particle complex subunit 1 isoform 1 [Vitis vinifera];; (*TAIR) AT1G51160.2 (e_value=5e-22) | Symbols: | SNARE-like superfamily protein | chr1:18950057-18951560 FORWARD LENGTH=169;; (*ITAG) Solyc03g007680.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:2206118-2210847 transcript_region:SL2.40ch03:2206118..2210847+ go_terms:GO:0005515,GO:0017112 functional_description:"Trafficking protein particle complex subunit 4 (AHRD V1 ***- B2WD65_PYRTR); contains Interpro domain(s) IPR007233 Sybindin-like protein "; GO:0005515,GO:0017112 NbS00045046g0008.1 protein AED:0.20 eAED:0.23 QI:0|0.6|0|1|0.4|0.33|6|0|484; (*GB) gi|359472912|ref|XP_002279997.2| (e_value=2e-92) PREDICTED: putative zinc finger protein At1g68190-like [Vitis vinifera];; (*SWP) sp|Q9C9F4|COLX_ARATH (e_value=2e-38) Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1;; (*TAIR) AT1G68190.1 (e_value=1e-39) | Symbols: | B-box zinc finger family protein | chr1:25559384-25561004 FORWARD LENGTH=356;; (*ITAG) Solyc04g007470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1146534-1149345 transcript_region:SL2.40ch04:1146534..1149345+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00030528g0011.1 protein AED:0.35 eAED:0.35 QI:79|1|0.75|1|0.33|0.5|4|0|114; (*GB) gi|225431922|ref|XP_002276956.1| (e_value=3e-77) PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis vinifera];; (*SWP) sp|Q32P73|RPB9_BOVIN (e_value=3e-48) DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1;; (*TAIR) AT3G16980.1 (e_value=5e-76) | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases M/15 Kd subunit | chr3:5794526-5795699 FORWARD LENGTH=114;; (*ITAG) Solyc05g053430.2.1 (e_value=6e-85) genomic_reference:SL2.40ch05 gene_region:62659706-62663709 transcript_region:SL2.40ch05:62659706..62663709- go_terms:GO:0004672,GO:0003899 functional_description:"DNA-directed RNA polymerase subunit (AHRD V1 **** A5AGZ7_VITVI); contains Interpro domain(s) IPR001529 DNA-directed RNA polymerase, M/15 kDa subunit "; GO:0004672,GO:0003899 NbS00030528g0017.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|506; (*GB) gi|170287|gb|AAA34093.1| (e_value=4e-166) phytochrome B, partial [Nicotiana tabacum];; (*SWP) sp|P29130|PHYB_TOBAC (e_value=3e-160) Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2;; (*TAIR) AT2G18790.1 (e_value=3e-134) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc05g053410.2.1 (e_value=1e-153) genomic_reference:SL2.40ch05 gene_region:62648223-62653411 transcript_region:SL2.40ch05:62648223..62653411- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B2"; GO:0042802,GO:0009883 NbS00030528g0014.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|418; (*GB) gi|5757903|gb|AAD50631.1|AF122901_1 (e_value=0.0) phytochrome B2 [Solanum lycopersicum];; (*SWP) sp|Q9ZS62|PHYB1_SOLLC (e_value=0.0) Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1;; (*TAIR) AT2G18790.1 (e_value=0.0) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc05g053410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62648223-62653411 transcript_region:SL2.40ch05:62648223..62653411- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B2"; GO:0042802,GO:0009883 NbS00030528g0005.1 protein AED:0.47 eAED:0.47 QI:0|1|0|1|1|1|2|0|101; (*GB) gi|5757903|gb|AAD50631.1|AF122901_1 (e_value=2e-47) phytochrome B2 [Solanum lycopersicum];; (*SWP) sp|Q9ZS62|PHYB1_SOLLC (e_value=8e-46) Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1;; (*TAIR) AT2G18790.1 (e_value=1e-37) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc05g053410.2.1 (e_value=4e-50) genomic_reference:SL2.40ch05 gene_region:62648223-62653411 transcript_region:SL2.40ch05:62648223..62653411- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B2"; GO:0042802,GO:0009883 NbS00030528g0018.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|4|0|337; (*GB) gi|255556358|ref|XP_002519213.1| (e_value=2e-108) DELLA protein RGL1, putative [Ricinus communis];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=9e-37) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=7e-38) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc05g053420.1.1 (e_value=4e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62658203-62659621 transcript_region:SL2.40ch05:62658203..62659621+ go_terms:GO:0003700 functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 **-- A1YWR4_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00030528g0016.1 protein AED:0.47 eAED:0.50 QI:0|0|0|1|0|0|3|0|106; (*GB) gi|5757903|gb|AAD50631.1|AF122901_1 (e_value=4e-51) phytochrome B2 [Solanum lycopersicum];; (*SWP) sp|P29130|PHYB_TOBAC (e_value=3e-50) Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2;; (*TAIR) AT2G18790.1 (e_value=7e-41) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc05g053410.2.1 (e_value=7e-54) genomic_reference:SL2.40ch05 gene_region:62648223-62653411 transcript_region:SL2.40ch05:62648223..62653411- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B2"; GO:0042802,GO:0009883 NbS00000655g0003.1 protein AED:0.16 eAED:0.16 QI:88|0.66|0.75|1|0|0|4|719|150; (*GB) gi|225447436|ref|XP_002266103.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100252893 [Vitis vinifera];; (*TAIR) AT2G33180.1 (e_value=1e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 22 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:14066479-14067314 FORWARD LENGTH=166;; (*ITAG) Solyc10g007670.2.1 (e_value=2e-60) genomic_reference:SL2.40ch10 gene_region:1944125-1945603 transcript_region:SL2.40ch10:1944125..1945603+ go_terms:GO:0016226 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0016226 NbS00000655g0006.1 protein AED:0.09 eAED:0.09 QI:643|0.5|0.4|1|1|1|5|0|440; (*GB) gi|225447438|ref|XP_002266143.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|Q8IVU3|HERC6_HUMAN (e_value=6e-29) Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2;; (*TAIR) AT5G48330.2 (e_value=1e-170) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:19585989-19587729 FORWARD LENGTH=454;; (*ITAG) Solyc10g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1945573-1948986 transcript_region:SL2.40ch10:1945573..1948986- go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation RCC1 (AHRD V1 **-- B9MQV6_ANATD); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00011538g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.71|1|0.6|0.66|21|303|785; (*GB) gi|224120026|ref|XP_002331118.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQ55|DRP2B_ARATH (e_value=0.0) Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2;; (*TAIR) AT1G59610.1 (e_value=0.0) | Symbols: ADL3, CF1, DRP2B, DL3 | dynamin-like 3 | chr1:21893413-21900780 FORWARD LENGTH=920;; (*ITAG) Solyc11g039650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:25081015-25107234 transcript_region:SL2.40ch11:25081015..25107234+ go_terms:GO:0005525 functional_description:"Dynamin-2A (AHRD V1 ***- B6UEQ3_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00011538g0007.1 protein AED:0.12 eAED:0.13 QI:0|0.66|0.71|1|0.5|0.57|7|594|261; (*GB) gi|224129778|ref|XP_002328800.1| (e_value=5e-146) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23390.1 (e_value=8e-133) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). | chr2:9960568-9963476 REVERSE LENGTH=469;; (*ITAG) Solyc01g103110.2.1 (e_value=5e-164) genomic_reference:SL2.40ch01 gene_region:83534654-83541901 transcript_region:SL2.40ch01:83534654..83541901+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007434 Protein of unknown function DUF482 "; NbS00001970g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|1|1|5|253|296; (*GB) gi|82400118|gb|ABB72798.1| (e_value=3e-171) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=1e-172) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G07090.1 (e_value=2e-166) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202410-2203805 FORWARD LENGTH=262;; (*ITAG) Solyc06g007360.2.1 (e_value=6e-175) genomic_reference:SL2.40ch06 gene_region:1393218-1395914 transcript_region:SL2.40ch06:1393218..1395914- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00050087g0009.1 protein AED:0.00 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|173; (*GB) gi|351725837|ref|NP_001237874.1| (e_value=2e-59) uncharacterized protein LOC100305865 precursor [Glycine max];; (*SWP) sp|Q41001|BCP_PEA (e_value=4e-24) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G27200.1 (e_value=4e-50) | Symbols: | Cupredoxin superfamily protein | chr3:10043738-10044340 REVERSE LENGTH=174;; (*ITAG) Solyc02g094050.2.1 (e_value=2e-77) genomic_reference:SL2.40ch02 gene_region:49268488-49269541 transcript_region:SL2.40ch02:49268488..49269541+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00050087g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|193; (*GB) gi|147845835|emb|CAN82190.1| (e_value=4e-50) hypothetical protein VITISV_031115 [Vitis vinifera];; (*TAIR) AT3G27160.1 (e_value=3e-45) | Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183;; (*ITAG) Solyc02g068090.2.1 (e_value=1e-47) genomic_reference:SL2.40ch02 gene_region:32718467-32721668 transcript_region:SL2.40ch02:32718467..32721668- go_terms:GO:0005840 functional_description:"30S ribosomal protein S21, chloroplastic (Fragment) (AHRD V1 *--- RR21_SPIOL); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00050087g0008.1 protein AED:0.38 eAED:0.50 QI:0|0.5|0.4|1|1|1|5|66|202; (*GB) gi|225423672|ref|XP_002276491.1| (e_value=5e-115) PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera];; (*SWP) sp|O55166|VPS52_RAT (e_value=1e-34) Vacuolar protein sorting-associated protein 52 homolog OS=Rattus norvegicus GN=Vps52 PE=2 SV=2;; (*TAIR) AT1G71270.1 (e_value=2e-109) | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707;; (*ITAG) Solyc02g094090.2.1 (e_value=2e-128) genomic_reference:SL2.40ch02 gene_region:49292983-49310119 transcript_region:SL2.40ch02:49292983..49310119- functional_description:"Vacuolar protein sorting 52 (AHRD V1 **-- Q5TJF1_CANFA); contains Interpro domain(s) IPR007258 Vps52/Sac2 "; NbS00002207g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|3|0|192; (*GB) gi|359493919|ref|XP_003634692.1| (e_value=4e-85) PREDICTED: flavoprotein wrbA isoform 2 [Vitis vinifera];; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=4e-30) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G27270.1 (e_value=5e-81) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=4e-87) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00002207g0004.1 protein AED:0.08 eAED:0.12 QI:735|1|0.5|1|0|0|2|1717|85 NbS00002207g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|56542451|gb|AAV92890.1| (e_value=3e-54) Avr9/Cf-9 rapidly elicited protein 20, partial [Nicotiana tabacum];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=5e-34) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=2e-37) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc10g006660.2.1 (e_value=1e-57) genomic_reference:SL2.40ch10 gene_region:1164164-1165705 transcript_region:SL2.40ch10:1164164..1165705- go_terms:GO:0005200 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-- D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005200 NbS00002207g0014.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0.36|1|0.5|0.36|11|0|1046; (*GB) gi|302143132|emb|CBI20427.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc10g006710.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1175054-1179926 transcript_region:SL2.40ch10:1175054..1179926+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00002207g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|77 NbS00017986g0008.1 protein AED:0.08 eAED:0.08 QI:28|0.75|0.8|1|0.5|0.6|5|262|484; (*GB) gi|225470946|ref|XP_002264410.1| (e_value=0.0) PREDICTED: laccase-6 [Vitis vinifera];; (*SWP) sp|Q9ZPY2|LAC6_ARATH (e_value=2e-174) Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1;; (*TAIR) AT2G46570.1 (e_value=2e-175) | Symbols: LAC6 | laccase 6 | chr2:19126872-19129069 FORWARD LENGTH=569;; (*ITAG) Solyc05g050540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59817624-59820559 transcript_region:SL2.40ch05:59817624..59820559- go_terms:GO:0004322 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00017986g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|225470960|ref|XP_002266683.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100253490 [Vitis vinifera];; (*TAIR) AT4G00905.1 (e_value=8e-70) | Symbols: | NC domain-containing protein-related | chr4:387865-389060 FORWARD LENGTH=263;; (*ITAG) Solyc05g050520.2.1 (e_value=1e-86) genomic_reference:SL2.40ch05 gene_region:59808260-59811841 transcript_region:SL2.40ch05:59808260..59811841+ functional_description:"NC domain-containing protein (AHRD V1 **-- A6MD14_9ORYZ); contains Interpro domain(s) IPR007053 NC "; NbC26142923g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|401; (*GB) gi|224078898|ref|XP_002305671.1| (e_value=7e-48) bromodomain protein [Populus trichocarpa];; (*TAIR) AT1G61215.1 (e_value=5e-33) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475;; (*ITAG) Solyc10g009160.2.1 (e_value=3e-124) genomic_reference:SL2.40ch10 gene_region:3158151-3161699 transcript_region:SL2.40ch10:3158151..3161699+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9H245_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00005159g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|1469932|gb|AAB05225.1| (e_value=5e-103) pathogenesis-related protein-1 [Nicotiana glutinosa];; (*SWP) sp|P07053|PR1B_TOBAC (e_value=3e-104) Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G33720.1 (e_value=9e-64) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=5e-68) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00005159g0014.1 protein AED:0.27 eAED:0.27 QI:28|1|1|1|0.8|0.83|6|354|258; (*GB) gi|224105811|ref|XP_002313939.1| (e_value=5e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=3e-134) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT5G65810.1 (e_value=1e-135) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26337833-26339144 REVERSE LENGTH=258;; (*ITAG) Solyc10g047960.1.1 (e_value=2e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:38709332-38712666 transcript_region:SL2.40ch10:38709332..38712666- functional_description:"Unknown Protein (AHRD V1)"; NbS00005159g0013.1 protein AED:0.30 eAED:0.30 QI:212|1|1|1|1|1|3|296|201; (*GB) gi|156105710|gb|ABU49226.1| (e_value=3e-140) chloroplast methionine sulfoxide reductase B2 precursor [Nicotiana tabacum];; (*SWP) sp|Q9C5C8|MSRB2_ARATH (e_value=2e-88) Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1;; (*TAIR) AT4G21860.3 (e_value=1e-89) | Symbols: MSRB2 | methionine sulfoxide reductase B 2 | chr4:11600238-11601507 REVERSE LENGTH=202;; (*ITAG) Solyc10g047930.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:38589624-38594602 transcript_region:SL2.40ch10:38589624..38594602+ go_terms:GO:0033743,GO:0000318 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 **** B6T2C6_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0033743,GO:0000318 NbS00005159g0004.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|744; (*GB) gi|297805512|ref|XP_002870640.1| (e_value=0.0) DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FUG4|XPB2_ARATH (e_value=0.0) DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1;; (*TAIR) AT5G41360.1 (e_value=0.0) | Symbols: XPB2, ATXPB2 | homolog of Xeroderma pigmentosum complementation group B 2 | chr5:16544574-16549121 FORWARD LENGTH=766;; (*ITAG) Solyc08g081340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61564279-61573863 transcript_region:SL2.40ch08:61564279..61573863+ go_terms:GO:0043140 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** C8NNJ3_COREF); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B) "; GO:0043140 NbS00005159g0018.1 protein AED:0.14 eAED:0.14 QI:286|0.81|0.75|1|0.54|0.66|12|36|412; (*GB) gi|357476069|ref|XP_003608320.1| (e_value=0.0) Metal transporter CNNM4 [Medicago truncatula];; (*SWP) sp|Q9ZQR4|Y2452_ARATH (e_value=0.0) DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2;; (*TAIR) AT2G14520.1 (e_value=0.0) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr2:6182362-6184648 REVERSE LENGTH=423;; (*ITAG) Solyc10g048010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38972918-38976757 transcript_region:SL2.40ch10:38972918..38976757+ go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_SHIFL); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00006562g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|468; (*GB) gi|225430551|ref|XP_002283470.1| (e_value=5e-31) PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=5e-31) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=4e-32) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006450.1.1 (e_value=1e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1251302-1252609 transcript_region:SL2.40ch07:1251302..1252609+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00006562g0009.1 protein AED:0.17 eAED:0.22 QI:54|0.6|0.66|1|0.6|0.83|6|390|170; (*GB) gi|357479875|ref|XP_003610223.1| (e_value=5e-41) hypothetical protein MTR_4g129320 [Medicago truncatula];; (*TAIR) AT4G28025.2 (e_value=3e-36) | Symbols: | unknown protein. | chr4:13935836-13937367 REVERSE LENGTH=148;; (*ITAG) Solyc07g006490.2.1 (e_value=7e-67) genomic_reference:SL2.40ch07 gene_region:1266903-1270514 transcript_region:SL2.40ch07:1266903..1270514+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006562g0010.1 protein AED:0.02 eAED:0.07 QI:0|0|0|1|0|0|2|0|478; (*GB) gi|225455876|ref|XP_002275164.1| (e_value=5e-30) PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=2e-26) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=1e-27) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006430.1.1 (e_value=3e-135) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1245745-1247166 transcript_region:SL2.40ch07:1245745..1247166+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00047816g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|8|326|652; (*GB) gi|359495293|ref|XP_002277016.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265500 [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G71530.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:26939766-26942306 FORWARD LENGTH=655;; (*ITAG) Solyc06g064660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36690349-36696083 transcript_region:SL2.40ch06:36690349..36696083+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC25768282g0003.1 protein AED:0.10 eAED:0.10 QI:8|1|1|1|1|1|2|115|352; (*GB) gi|310813973|gb|ADP30798.1| (e_value=0.0) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ96|PUP1_ARATH (e_value=9e-107) Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1;; (*TAIR) AT1G28230.1 (e_value=7e-108) | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862200-9864554 REVERSE LENGTH=356;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00023340g0007.1 protein AED:0.14 eAED:0.17 QI:0|0.71|0.75|0.87|0.57|0.75|8|93|478; (*GB) gi|225463065|ref|XP_002266120.1| (e_value=3e-179) PREDICTED: calcium uptake protein 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|B1H2N3|MICU1_XENTR (e_value=1e-40) Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis GN=micu1 PE=2 SV=2;; (*TAIR) AT4G32060.1 (e_value=2e-157) | Symbols: | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498;; (*ITAG) Solyc02g014560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:8385076-8387112 transcript_region:SL2.40ch02:8385076..8387112+ go_terms:GO:0005515 functional_description:"Calcium binding atopy-related autoantigen 1 (AHRD V1 **-* B6SL16_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00023340g0105.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|0|0|2|0|162 NbS00015601g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|101 NbS00018723g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|225445023|ref|XP_002283114.1| (e_value=4e-120) PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera];; (*SWP) sp|O82199|C3H20_ARATH (e_value=2e-108) Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1;; (*TAIR) AT2G19810.1 (e_value=2e-109) | Symbols: | CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359;; (*ITAG) Solyc12g008660.1.1 (e_value=6e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00003539g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.8|1|1|1|5|0|256; (*GB) gi|82623429|gb|ABB87129.1| (e_value=2e-152) 60S ribosomal protein L7A-like [Solanum tuberosum];; (*SWP) sp|P49692|RL7A1_ARATH (e_value=1e-144) 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2;; (*TAIR) AT2G47610.1 (e_value=8e-146) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g064460.2.1 (e_value=3e-155) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00003539g0012.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|0.75|4|204|512; (*GB) gi|255571718|ref|XP_002526802.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47010.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc11g032090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:21384533-21389037 transcript_region:SL2.40ch11:21384533..21389037- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00038017g0005.1 protein AED:0.04 eAED:0.08 QI:0|0|0|1|0|0|2|0|222; (*ITAG) Solyc04g053070.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00000040g0001.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|1|1|3|0|271; (*GB) gi|359480677|ref|XP_002277534.2| (e_value=5e-110) PREDICTED: multidrug and toxin extrusion protein 1 [Vitis vinifera];; (*SWP) sp|A1L1P9|S47A1_DANRE (e_value=2e-28) Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1;; (*TAIR) AT5G19700.1 (e_value=3e-59) | Symbols: | MATE efflux family protein | chr5:6660821-6662347 REVERSE LENGTH=508;; (*ITAG) Solyc02g090740.2.1 (e_value=2e-142) genomic_reference:SL2.40ch02 gene_region:46831268-46833073 transcript_region:SL2.40ch02:46831268..46833073- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PHOLL); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00005721g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|245; (*GB) gi|87244453|gb|ABD34618.1| (e_value=1e-144) green ripe-like 1 [Solanum tuberosum];; (*SWP) sp|F4ITL6|RTE1_ARATH (e_value=4e-97) Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1;; (*TAIR) AT2G26070.1 (e_value=3e-98) | Symbols: RTE1 | Protein of unknown function (DUF778) | chr2:11105741-11106607 REVERSE LENGTH=250;; (*ITAG) Solyc08g065320.2.1 (e_value=5e-147) genomic_reference:SL2.40ch08 gene_region:50439456-50440648 transcript_region:SL2.40ch08:50439456..50440648+ functional_description:"Transmembrane protein 222 (Fragment) (AHRD V1 *--- Q5SSD9_HUMAN); contains Interpro domain(s) IPR008496 Protein of unknown function DUF778 "; NbS00005721g0006.1 protein AED:0.38 eAED:0.39 QI:0|0.87|0.77|0.88|0.87|0.88|9|0|271; (*GB) gi|356460907|ref|NP_001239045.1| (e_value=2e-128) calcineurin B-like 10 [Solanum lycopersicum];; (*SWP) sp|Q7FRS8|CNBLA_ARATH (e_value=2e-97) Calcineurin B-like protein 10 OS=Arabidopsis thaliana GN=CBL10 PE=1 SV=1;; (*TAIR) AT4G33000.2 (e_value=7e-99) | Symbols: CBL10, SCABP8, ATCBL10 | calcineurin B-like protein 10 | chr4:15924821-15926398 FORWARD LENGTH=246;; (*ITAG) Solyc08g065330.2.1 (e_value=4e-131) genomic_reference:SL2.40ch08 gene_region:50446717-50455805 transcript_region:SL2.40ch08:50446717..50455805+ go_terms:GO:0005515 functional_description:"Calcineurin B-like protein 06 (AHRD V1 ***- C4P7Z3_VITVI); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005515 NbS00014506g0004.1 protein AED:0.04 eAED:0.06 QI:82|1|0.5|1|1|1|2|0|260; (*GB) gi|147819737|emb|CAN67303.1| (e_value=1e-77) hypothetical protein VITISV_000736 [Vitis vinifera];; (*TAIR) AT4G22600.1 (e_value=7e-54) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11900211-11901032 REVERSE LENGTH=273;; (*ITAG) Solyc08g079050.1.1 (e_value=5e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59858428-59859307 transcript_region:SL2.40ch08:59858428..59859307+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043961g0007.1 protein AED:0.11 eAED:0.13 QI:23|0|0|1|0.5|0.33|3|0|316; (*GB) gi|297741148|emb|CBI31879.3| (e_value=3e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=2e-112) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G12260.1 (e_value=1e-113) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395;; (*ITAG) Solyc08g079120.1.1 (e_value=5e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59926058-59930002 transcript_region:SL2.40ch08:59926058..59930002- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N3P6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000309g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|8|78; (*ITAG) Solyc04g025670.2.1 (e_value=8e-27) genomic_reference:SL2.40ch04 gene_region:22173162-22175441 transcript_region:SL2.40ch04:22173162..22175441- functional_description:"Os02g0741900 protein (Fragment) (AHRD V1 ***- Q0DXN9_ORYSJ); contains Interpro domain(s) IPR019181 RNA-processing, Lsm domain "; NbS00030486g0006.1 protein AED:0.09 eAED:0.10 QI:74|0.55|0.7|0.9|0.88|0.9|10|740|1503; (*GB) gi|225426140|ref|XP_002272901.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260315 [Vitis vinifera];; (*TAIR) AT4G11270.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:6854461-6859490 FORWARD LENGTH=1446;; (*ITAG) Solyc08g081640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61790429-61799592 transcript_region:SL2.40ch08:61790429..61799592- go_terms:GO:0000166 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 *--- C1H4E7_PARBA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00011154g0012.1 protein AED:0.36 eAED:0.44 QI:0|0|0|1|0.5|0|3|0|178; (*GB) gi|57014019|ref|YP_173490.1| (e_value=5e-41) hypothetical protein NitaMp153 [Nicotiana tabacum];; (*ITAG) Solyc01g065790.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011154g0016.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|0|0.33|3|0|103; (*GB) gi|57014017|ref|YP_173488.1| (e_value=2e-47) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=5e-49) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=9e-45) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-50) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00011154g0015.1 protein AED:0.41 eAED:0.51 QI:0|0|0|1|0|0|3|0|248; (*GB) gi|297740917|emb|CBI31099.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=3e-43) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-42) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc01g065810.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:64800051-64800539 transcript_region:SL2.40ch01:64800051..64800539+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00011154g0014.1 protein AED:0.59 eAED:0.62 QI:0|0|0|1|0|0|2|0|157; (*GB) gi|57014021|ref|YP_173492.1| (e_value=4e-38) hypothetical protein NitaMp155 [Nicotiana tabacum]; NbS00011154g0013.1 protein AED:0.40 eAED:0.62 QI:0|0|0|0.5|0|0|2|0|153; (*ITAG) Solyc00g014840.1.1 (e_value=7e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11072542-11072883 transcript_region:SL2.40ch00:11072542..11072883+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011154g0017.1 protein AED:0.46 eAED:0.58 QI:0|0|0|1|0|0|3|0|129; (*ITAG) Solyc00g014860.1.1 (e_value=5e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11074683-11074992 transcript_region:SL2.40ch00:11074683..11074992- functional_description:"Unknown Protein (AHRD V1)"; NbS00061161g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|255567196|ref|XP_002524579.1| (e_value=6e-166) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SRR1|FBL12_ARATH (e_value=5e-137) F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1;; (*TAIR) AT3G07550.2 (e_value=4e-138) | Symbols: | RNI-like superfamily protein | chr3:2409946-2411133 FORWARD LENGTH=395;; (*ITAG) Solyc06g007680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1681082-1682284 transcript_region:SL2.40ch06:1681082..1682284+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00061161g0006.1 protein AED:0.34 eAED:0.35 QI:0|0.75|0.6|1|1|1|5|223|295; (*GB) gi|171988286|gb|ACB59355.1| (e_value=1e-72) peroxisome biogenesis factor 13 [Nicotiana tabacum];; (*SWP) sp|Q9SRR0|PEX13_ARATH (e_value=6e-57) Peroxisomal membrane protein 13 OS=Arabidopsis thaliana GN=PEX13 PE=1 SV=1;; (*TAIR) AT3G07560.1 (e_value=5e-58) | Symbols: APM2, PEX13 | peroxin 13 | chr3:2411616-2413310 REVERSE LENGTH=304;; (*ITAG) Solyc06g007700.2.1 (e_value=1e-74) genomic_reference:SL2.40ch06 gene_region:1682841-1687801 transcript_region:SL2.40ch06:1682841..1687801- functional_description:"Peroxisome biogenesis factor 13 (AHRD V1 *-*- B9U2H7_TOBAC)"; NbS00015188g0002.1 protein AED:0.09 eAED:0.13 QI:230|0.75|0.8|1|0.25|0.2|5|0|1071; (*GB) gi|255556649|ref|XP_002519358.1| (e_value=0.0) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=4e-128) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G36930.1 (e_value=1e-148) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571907 REVERSE LENGTH=1188;; (*ITAG) Solyc01g113620.1.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82315767-82320596 transcript_region:SL2.40ch01:82315767..82320596+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"NBS-LRR resistance protein (Fragment) (AHRD V1 *-*- C1K2I0_ROSHC); contains Interpro domain(s) IPR002182 NB-ARC "; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00015188g0009.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0.5|0.33|3|0|263; (*GB) gi|147852242|emb|CAN80134.1| (e_value=9e-90) hypothetical protein VITISV_012033 [Vitis vinifera];; (*SWP) sp|Q9FIC8|GL116_ARATH (e_value=9e-82) Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1;; (*TAIR) AT5G39190.2 (e_value=3e-86) | Symbols: GLP2A, ATGER2, GER2 | germin-like protein 2 | chr5:15692771-15693546 REVERSE LENGTH=200;; (*ITAG) Solyc01g102910.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:83336031-83337112 transcript_region:SL2.40ch01:83336031..83337112+ go_terms:GO:0050162 functional_description:"Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00015188g0003.1 protein AED:0.18 eAED:0.70 QI:169|0|0.5|1|0|0.5|2|0|458; (*GB) gi|255553307|ref|XP_002517696.1| (e_value=1e-62) TMV resistance protein N, putative [Ricinus communis];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=5e-17) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G36930.2 (e_value=2e-42) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc01g113620.1.1 (e_value=4e-73) genomic_reference:SL2.40ch01 gene_region:82315767-82320596 transcript_region:SL2.40ch01:82315767..82320596+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"NBS-LRR resistance protein (Fragment) (AHRD V1 *-*- C1K2I0_ROSHC); contains Interpro domain(s) IPR002182 NB-ARC "; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00022262g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|0|0.25|4|399|193; (*GB) gi|255567873|ref|XP_002524914.1| (e_value=1e-69) rer1 protein, putative [Ricinus communis];; (*SWP) sp|O48670|RER1A_ARATH (e_value=3e-58) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=2e-59) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc04g078510.2.1 (e_value=3e-73) genomic_reference:SL2.40ch04 gene_region:60824846-60828559 transcript_region:SL2.40ch04:60824846..60828559+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00022262g0010.1 protein AED:0.06 eAED:0.09 QI:0|0.57|0.62|1|0.57|0.62|8|134|432; (*GB) gi|297805586|ref|XP_002870677.1| (e_value=0.0) hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=0.0) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.2 (e_value=0.0) | Symbols: | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=445;; (*ITAG) Solyc05g014530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8389595-8392288 transcript_region:SL2.40ch05:8389595..8392288+ go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00023022g0011.1 protein AED:0.02 eAED:0.02 QI:262|0.75|0.8|1|0.5|0.8|5|926|174; (*GB) gi|296089827|emb|CBI39646.3| (e_value=3e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0JP11|C3H3_ORYSJ (e_value=2e-32) Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2;; (*TAIR) AT5G26749.1 (e_value=4e-30) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:9398285-9399239 REVERSE LENGTH=147;; (*ITAG) Solyc01g100990.2.1 (e_value=2e-77) genomic_reference:SL2.40ch01 gene_region:82619600-82622439 transcript_region:SL2.40ch01:82619600..82622439- go_terms:GO:0008270 functional_description:"Zinc finger matrin type 5 (AHRD V1 ***- B0S517_DANRE); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00023022g0012.1 protein AED:0.09 eAED:0.09 QI:188|1|1|1|1|1|6|44|464; (*GB) gi|225450488|ref|XP_002276945.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=5e-176) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G02460.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:504897-507099 REVERSE LENGTH=491;; (*ITAG) Solyc01g100980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82614300-82616929 transcript_region:SL2.40ch01:82614300..82616929- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- B6TPQ7_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00023022g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|1|1|1|6|0|685; (*GB) gi|147792200|emb|CAN62034.1| (e_value=0.0) hypothetical protein VITISV_014731 [Vitis vinifera];; (*SWP) sp|F4K1B1|RPAP2_ARATH (e_value=1e-70) Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1;; (*TAIR) AT5G26760.2 (e_value=9e-72) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:9403869-9407170 REVERSE LENGTH=735;; (*ITAG) Solyc01g101010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82636054-82642167 transcript_region:SL2.40ch01:82636054..82642167- functional_description:"AGAP008431-PA (Fragment) (AHRD V1 *-*- A7UUL5_ANOGA); contains Interpro domain(s) IPR007308 Protein of unknown function DUF408 "; NbS00023022g0010.1 protein AED:0.34 eAED:0.35 QI:18|0.90|0.83|1|0.72|0.83|12|600|332; (*GB) gi|81075765|gb|ABB55385.1| (e_value=6e-165) Ser/Thr protein kinase-like [Solanum tuberosum];; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=8e-164) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1;; (*TAIR) AT3G05840.1 (e_value=3e-159) | Symbols: ATSK12 | Protein kinase superfamily protein | chr3:1740793-1742927 FORWARD LENGTH=409;; (*ITAG) Solyc01g101000.2.1 (e_value=3e-168) genomic_reference:SL2.40ch01 gene_region:82623105-82629503 transcript_region:SL2.40ch01:82623105..82629503- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023022g0013.1 protein AED:0.37 eAED:0.37 QI:218|1|1|1|0.75|0.6|5|389|219; (*GB) gi|225450494|ref|XP_002280759.1| (e_value=1e-141) PREDICTED: pyrrolidone-carboxylate peptidase isoform 1 [Vitis vinifera];; (*SWP) sp|O73944|PCP_PYRFU (e_value=2e-14) Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1;; (*TAIR) AT1G56700.2 (e_value=6e-116) | Symbols: | Peptidase C15, pyroglutamyl peptidase I-like | chr1:21256743-21257640 FORWARD LENGTH=219;; (*ITAG) Solyc01g100970.2.1 (e_value=6e-158) genomic_reference:SL2.40ch01 gene_region:82607558-82613025 transcript_region:SL2.40ch01:82607558..82613025+ go_terms:GO:0008233 functional_description:"Pyrrolidone-carboxylate peptidase (AHRD V1 **** B6SP89_MAIZE); contains Interpro domain(s) IPR000816 Peptidase C15, pyroglutamyl peptidase I "; GO:0008233 NbS00030567g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|658; (*GB) gi|22087131|gb|AAM90848.1|AF481952_1 (e_value=0.0) hairy meristem [Petunia x hybrida];; (*SWP) sp|O81316|SCL6_ARATH (e_value=3e-87) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=2e-88) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc08g078800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59683241-59684665 transcript_region:SL2.40ch08:59683241..59684665- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GVG4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00030567g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|444; (*GB) gi|22087131|gb|AAM90848.1|AF481952_1 (e_value=0.0) hairy meristem [Petunia x hybrida];; (*SWP) sp|O81316|SCL6_ARATH (e_value=7e-74) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=5e-75) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc08g078800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59683241-59684665 transcript_region:SL2.40ch08:59683241..59684665- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GVG4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00030567g0003.1 protein AED:0.31 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|22087131|gb|AAM90848.1|AF481952_1 (e_value=4e-112) hairy meristem [Petunia x hybrida];; (*ITAG) Solyc08g078800.1.1 (e_value=3e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59683241-59684665 transcript_region:SL2.40ch08:59683241..59684665- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GVG4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00025697g0005.1 protein AED:0.15 eAED:0.16 QI:166|1|0.66|1|1|1|3|0|248; (*GB) gi|21593842|gb|AAM65809.1| (e_value=2e-48) unknown [Arabidopsis thaliana];; (*SWP) sp|O04209|CLC2_ARATH (e_value=7e-50) Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1;; (*TAIR) AT2G40060.1 (e_value=5e-51) | Symbols: | Clathrin light chain protein | chr2:16726564-16728001 FORWARD LENGTH=258;; (*ITAG) Solyc09g014450.2.1 (e_value=1e-86) genomic_reference:SL2.40ch09 gene_region:6067468-6071263 transcript_region:SL2.40ch09:6067468..6071263+ go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00025697g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.57|0.85|1|1|7|191|421; (*GB) gi|225440666|ref|XP_002274657.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Vitis vinifera];; (*SWP) sp|C0LGN2|Y3148_ARATH (e_value=3e-91) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1;; (*TAIR) AT3G09010.1 (e_value=2e-164) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc10g076760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59044149-59046083 transcript_region:SL2.40ch10:59044149..59046083+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- C6FF64_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00035687g0007.1 protein AED:0.23 eAED:0.23 QI:300|1|0.75|1|1|1|4|0|274; (*GB) gi|84620802|gb|ABC59515.1| (e_value=9e-120) chloroplast photosystem II 22 kDa component [Nicotiana benthamiana];; (*SWP) sp|Q9SMB4|PSBS_TOBAC (e_value=2e-118) Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1;; (*TAIR) AT1G44575.1 (e_value=1e-92) | Symbols: NPQ4, PSBS | Chlorophyll A-B binding family protein | chr1:16871768-16873194 FORWARD LENGTH=265;; (*ITAG) Solyc06g060340.2.1 (e_value=1e-94) genomic_reference:SL2.40ch06 gene_region:34712220-34715366 transcript_region:SL2.40ch06:34712220..34715366+ go_terms:GO:0016168,GO:0051738 functional_description:"Chloroplast photosystem II-associated protein (AHRD V1 ***- A8HPM2_CHLRE); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168,GO:0051738 NbS00038165g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.55|0.5|1|0.66|0.6|10|0|658; (*GB) gi|255557871|ref|XP_002519965.1| (e_value=0.0) Extensin-3 precursor, putative [Ricinus communis];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=3e-21) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT1G32090.1 (e_value=0.0) | Symbols: | early-responsive to dehydration stress protein (ERD4) | chr1:11540244-11544041 REVERSE LENGTH=806;; (*ITAG) Solyc08g076310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57437506-57445845 transcript_region:SL2.40ch08:57437506..57445845- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00025974g0007.1 protein AED:0.04 eAED:0.04 QI:236|0.75|1|1|0.75|0.8|5|132|182; (*GB) gi|296086145|emb|CBI31586.3| (e_value=1e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39855.2 (e_value=1e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16637845-16638852 FORWARD LENGTH=142;; (*ITAG) Solyc05g052890.2.1 (e_value=2e-34) genomic_reference:SL2.40ch05 gene_region:62215390-62217617 transcript_region:SL2.40ch05:62215390..62217617- functional_description:"Unknown Protein (AHRD V1)"; NbS00025974g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|297806613|ref|XP_002871190.1| (e_value=1e-69) hypothetical protein ARALYDRAFT_487395 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G05950.1 (e_value=6e-72) | Symbols: MEE60 | maternal effect embryo arrest 60 | chr5:1788814-1789341 FORWARD LENGTH=175;; (*ITAG) Solyc05g052990.2.1 (e_value=7e-114) genomic_reference:SL2.40ch05 gene_region:62307108-62308712 transcript_region:SL2.40ch05:62307108..62308712+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025974g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|4|0|93; (*GB) gi|312271200|gb|ADQ57297.1| (e_value=4e-24) xylem sap protein 10 kDa [Solanum lycopersicum];; (*TAIR) AT5G05960.1 (e_value=4e-24) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:1790256-1790694 FORWARD LENGTH=116;; (*ITAG) Solyc03g079880.2.1 (e_value=1e-26) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00017406g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.55|0.5|1|0.88|0.9|10|0|585; (*GB) gi|255569257|ref|XP_002525596.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|Q56078|BGLX_SALTY (e_value=2e-65) Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX PE=3 SV=2;; (*TAIR) AT3G47000.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:17313811-17316539 REVERSE LENGTH=608;; (*ITAG) Solyc06g076780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44079224-44083374 transcript_region:SL2.40ch06:44079224..44083374- go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbS00017406g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.5|1|0.66|0.25|4|0|438; (*GB) gi|224106309|ref|XP_002314124.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0IQU1|LAC22_ORYSJ (e_value=0.0) Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc06g076760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44056679-44059629 transcript_region:SL2.40ch06:44056679..44059629+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00017406g0012.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|306; (*GB) gi|224106307|ref|XP_002314123.1| (e_value=2e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58900.1 (e_value=4e-99) | Symbols: | Homeodomain-like transcriptional regulator | chr5:23783275-23784667 REVERSE LENGTH=288;; (*ITAG) Solyc06g076770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44075004-44077090 transcript_region:SL2.40ch06:44075004..44077090+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 *--* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00017406g0004.1 protein AED:0.37 eAED:0.37 QI:0|1|0|1|1|1|2|0|195; (*GB) gi|57013961|ref|YP_173433.1| (e_value=1e-80) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*ITAG) Solyc11g063540.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbC24761720g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|17887381|gb|AAL40864.1| (e_value=7e-131) receptor protein kinase-like protein [Capsicum annuum];; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=3e-119) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=3e-120) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc09g015830.1.1 (e_value=3e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:11274733-11276682 transcript_region:SL2.40ch09:11274733..11276682- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00043203g0002.1 protein AED:0.20 eAED:0.20 QI:84|0.66|0|1|0.33|0.75|4|0|147; (*GB) gi|255556574|ref|XP_002519321.1| (e_value=1e-44) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G30495.1 (e_value=2e-35) | Symbols: | Fcf2 pre-rRNA processing protein | chr5:11380190-11381391 FORWARD LENGTH=196;; (*ITAG) Solyc05g053220.2.1 (e_value=2e-68) genomic_reference:SL2.40ch05 gene_region:62501221-62503686 transcript_region:SL2.40ch05:62501221..62503686+ functional_description:"rRNA-processing protein FCF2 (AHRD V1 *--- B2VVS0_PYRTR); contains Interpro domain(s) IPR014810 Fcf2 pre-rRNA processing "; NbS00026159g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.5|1|0.33|0.25|4|148|452; (*GB) gi|359485160|ref|XP_003633222.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: glycerol-3-phosphate acyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q9SHJ5|GPAT1_ARATH (e_value=2e-160) Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1;; (*TAIR) AT1G06520.1 (e_value=2e-161) | Symbols: ATGPAT1, GPAT1 | glycerol-3-phosphate acyltransferase 1 | chr1:1994170-1996067 REVERSE LENGTH=585;; (*ITAG) Solyc07g056320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61490513-61494160 transcript_region:SL2.40ch07:61490513..61494160- go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T753_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00034305g0008.1 protein AED:0.30 eAED:0.32 QI:0|0.94|0.88|1|0.76|0.83|18|0|774; (*GB) gi|359477208|ref|XP_002279515.2| (e_value=0.0) PREDICTED: flowering time control protein FCA [Vitis vinifera];; (*SWP) sp|O04425|FCA_ARATH (e_value=1e-127) Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2;; (*TAIR) AT4G16280.4 (e_value=1e-128) | Symbols: | RNA binding;abscisic acid binding | chr4:9207164-9214187 REVERSE LENGTH=672;; (*ITAG) Solyc01g058450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:59383756-59401962 transcript_region:SL2.40ch01:59383756..59401962+ go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B6UFA0_MAIZE); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003723 NbS00017930g0007.1 protein AED:0.07 eAED:0.07 QI:587|0.66|0.42|1|1|1|7|0|901; (*GB) gi|283099385|gb|ADB08056.1| (e_value=0.0) microtubule-associated protein [Nicotiana benthamiana];; (*SWP) sp|Q54VM3|TBC5A_DICDI (e_value=3e-33) TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1;; (*TAIR) AT4G29950.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:14657464-14660370 FORWARD LENGTH=828;; (*ITAG) Solyc07g008840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3803764-3808890 transcript_region:SL2.40ch07:3803764..3808890- go_terms:GO:0005622 functional_description:"TBC1 domain family member 5 (AHRD V1 *--- B9A6K1_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00017930g0005.1 protein AED:0.02 eAED:0.07 QI:0|0|0|1|1|1|2|0|502; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=2e-152) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=1e-110) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT1G64940.1 (e_value=2e-125) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc06g074180.1.1 (e_value=5e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42260876-42262396 transcript_region:SL2.40ch06:42260876..42262396+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00031846g0014.1 protein AED:0.04 eAED:0.04 QI:463|1|1|1|0.5|0.33|3|243|265; (*GB) gi|225438803|ref|XP_002283219.1| (e_value=2e-86) PREDICTED: probable WRKY transcription factor 7-like [Vitis vinifera];; (*SWP) sp|Q9STX0|WRKY7_ARATH (e_value=4e-56) Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1;; (*TAIR) AT4G24240.1 (e_value=3e-57) | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein 7 | chr4:12571930-12573446 FORWARD LENGTH=353;; (*ITAG) Solyc02g093050.2.1 (e_value=5e-96) genomic_reference:SL2.40ch02 gene_region:48575427-48577339 transcript_region:SL2.40ch02:48575427..48577339+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 26 (AHRD V1 ***- C9DI15_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00031846g0006.1 protein AED:0.15 eAED:0.15 QI:183|0|0|1|1|1|2|0|90; (*GB) gi|224137706|ref|XP_002327192.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q948Z4|SNAK1_SOLTU (e_value=8e-27) Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1;; (*TAIR) AT2G39540.1 (e_value=2e-25) | Symbols: | Gibberellin-regulated family protein | chr2:16500866-16501241 FORWARD LENGTH=87;; (*ITAG) Solyc08g005620.2.1 (e_value=2e-28) genomic_reference:SL2.40ch08 gene_region:486408-487167 transcript_region:SL2.40ch08:486408..487167+ functional_description:"Gibberellin-regulated family protein (AHRD V1 **-- D7L2S3_ARALY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00031846g0017.1 protein AED:0.25 eAED:0.25 QI:30|0.9|0.72|1|0.9|0.90|11|272|757; (*GB) gi|359480634|ref|XP_002279255.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247452 [Vitis vinifera];; (*SWP) sp|Q99J79|DDB2_MOUSE (e_value=1e-12) DNA damage-binding protein 2 OS=Mus musculus GN=Ddb2 PE=1 SV=1;; (*TAIR) AT4G34280.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc02g064800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30527138-30531699 transcript_region:SL2.40ch02:30527138..30531699+ go_terms:GO:0000166 functional_description:"Histone-binding protein RBBP7 (AHRD V1 *--* RBBP7_BOVIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00029015g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00021788g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|297742064|emb|CBI33851.3| (e_value=9e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=7e-46) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=5e-47) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc04g005560.2.1 (e_value=2e-59) genomic_reference:SL2.40ch04 gene_region:374381-379758 transcript_region:SL2.40ch04:374381..379758+ go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00021788g0004.1 protein AED:0.15 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|138|165; (*GB) gi|255562942|ref|XP_002522476.1| (e_value=3e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G14060.1 (e_value=8e-27) | Symbols: | GCK domain-containing protein | chr1:4817354-4817893 REVERSE LENGTH=179;; (*ITAG) Solyc04g005580.1.1 (e_value=7e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:383765-384205 transcript_region:SL2.40ch04:383765..384205- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012891 GCK "; NbS00021788g0012.1 protein AED:0.28 eAED:0.28 QI:91|1|1|1|0|0.5|2|216|118; (*GB) gi|224098924|ref|XP_002311319.1| (e_value=5e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT1G26740.1 (e_value=9e-18) | Symbols: | Ribosomal L32p protein family | chr1:9245280-9246555 REVERSE LENGTH=134;; (*ITAG) Solyc04g005590.2.1 (e_value=5e-46) genomic_reference:SL2.40ch04 gene_region:385719-389274 transcript_region:SL2.40ch04:385719..389274- go_terms:GO:0015934 functional_description:"Ribosomal protein L32 (AHRD V1 ***- B6EV28_POPAL); contains Interpro domain(s) IPR002677 Ribosomal protein L32p "; GO:0015934 NbS00021788g0011.1 protein AED:0.29 eAED:0.29 QI:111|1|1|1|1|1|4|214|210; (*GB) gi|225462930|ref|XP_002267401.1| (e_value=3e-102) PREDICTED: transmembrane emp24 domain-containing protein bai-like [Vitis vinifera];; (*SWP) sp|Q28735|TMEDA_RABIT (e_value=3e-20) Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1;; (*TAIR) AT1G26690.1 (e_value=3e-95) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214;; (*ITAG) Solyc04g005570.2.1 (e_value=2e-126) genomic_reference:SL2.40ch04 gene_region:379991-382905 transcript_region:SL2.40ch04:379991..382905- go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00021788g0015.1 protein AED:0.08 eAED:0.32 QI:0|0|0.33|1|0|0.33|3|0|159; (*GB) gi|75107669|sp|Q5NRN4.1|CSPL1_SOLDE (e_value=6e-42) RecName: Full=CASP-like protein SDM1_58t00016;; (*SWP) sp|Q5NRN4|CSPL1_SOLDE (e_value=2e-43) CASP-like protein SDM1_58t00016 OS=Solanum demissum GN=SDM1_58t00016 PE=3 SV=1;; (*TAIR) AT5G15290.1 (e_value=8e-25) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:4967094-4967846 FORWARD LENGTH=187;; (*ITAG) Solyc04g005620.2.1 (e_value=2e-49) genomic_reference:SL2.40ch04 gene_region:408355-409667 transcript_region:SL2.40ch04:408355..409667- functional_description:"UPF0497 membrane protein 1 (AHRD V1 ***- U4971_SOLDE); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00010650g0004.1 protein AED:0.20 eAED:0.20 QI:229|0.8|1|1|0.4|0.5|6|202|407; (*GB) gi|225432518|ref|XP_002280143.1| (e_value=0.0) PREDICTED: serine incorporator 3 isoform 1 [Vitis vinifera];; (*SWP) sp|A4FUZ5|SERC3_BOVIN (e_value=3e-42) Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1;; (*TAIR) AT3G06170.1 (e_value=0.0) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:1867520-1869738 FORWARD LENGTH=409;; (*ITAG) Solyc06g054420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33686493-33691284 transcript_region:SL2.40ch06:33686493..33691284+ go_terms:GO:0005515,GO:0015194 functional_description:"Serine incorporator 1 (AHRD V1 **** B5DGK4_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0005515,GO:0015194 NbS00008083g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|0|0|2|567|356; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=4e-141) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT3G52060.2 (e_value=3e-133) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:19310987-19312027 REVERSE LENGTH=346;; (*ITAG) Solyc11g071850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52283425-52284495 transcript_region:SL2.40ch11:52283425..52284495+ functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00008083g0008.1 protein AED:0.32 eAED:0.32 QI:403|1|1|1|0.5|0.71|7|462|448; (*GB) gi|359479237|ref|XP_002265745.2| (e_value=8e-129) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*TAIR) AT3G22190.2 (e_value=1e-74) | Symbols: IQD5 | IQ-domain 5 | chr3:7831280-7833512 REVERSE LENGTH=422;; (*ITAG) Solyc11g071840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52274253-52280254 transcript_region:SL2.40ch11:52274253..52280254+ functional_description:"Calmodulin binding protein (AHRD V1 **-- B6TPD8_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00015497g0003.1 protein AED:0.14 eAED:0.14 QI:171|1|1|1|1|1|2|174|142; (*GB) gi|357452959|ref|XP_003596756.1| (e_value=8e-14) MADS box protein [Medicago truncatula];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=3e-12) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G24840.1 (e_value=2e-13) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc01g106730.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00015497g0107.1 protein AED:0.09 eAED:0.10 QI:0|1|0.66|1|0.5|0.33|3|596|596 NbS00022255g0004.1 protein AED:0.08 eAED:0.08 QI:225|1|0.91|1|1|1|12|294|605; (*GB) gi|355329948|dbj|BAL14273.1| (e_value=0.0) FK506-binding protein [Nicotiana tabacum];; (*SWP) sp|Q38931|FKB62_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=0.0) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc06g083190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45004847-45008910 transcript_region:SL2.40ch06:45004847..45008910- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00036598g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|606; (*GB) gi|225463844|ref|XP_002265179.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=2e-142) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=1e-143) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc01g081110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72954963-72956902 transcript_region:SL2.40ch01:72954963..72956902- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00011223g0003.1 protein AED:0.04 eAED:0.04 QI:45|0.71|0.75|1|0.57|0.62|8|597|394; (*GB) gi|224064460|ref|XP_002301487.1| (e_value=0.0) glycosyl hydrolase family 9 [Populus trichocarpa];; (*SWP) sp|O81416|GUN17_ARATH (e_value=0.0) Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1;; (*TAIR) AT4G02290.1 (e_value=0.0) | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B13 | chr4:1002654-1005125 REVERSE LENGTH=516;; (*ITAG) Solyc09g075360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62584484-62587919 transcript_region:SL2.40ch09:62584484..62587919+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00031566g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|529; (*GB) gi|151428453|gb|ABS12068.1| (e_value=0.0) high affinity phosphate transporter [Petunia x hybrida];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=0.0) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=0.0) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc09g090070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:64973106-64974722 transcript_region:SL2.40ch09:64973106..64974722+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22548_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00018250g0006.1 protein AED:0.11 eAED:0.11 QI:48|0.81|0.91|1|0.63|0.58|12|236|444; (*GB) gi|350534724|ref|NP_001234412.1| (e_value=0.0) beta-glucosidase 01 precursor [Solanum lycopersicum];; (*SWP) sp|Q75W17|FURH_VIBFR (e_value=1e-159) Furcatin hydrolase OS=Viburnum furcatum PE=1 SV=1;; (*TAIR) AT2G44480.1 (e_value=8e-141) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359780-18363001 FORWARD LENGTH=517;; (*ITAG) Solyc01g074030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70603706-70610676 transcript_region:SL2.40ch01:70603706..70610676+ go_terms:GO:0005975 functional_description:"Beta-glucosidase 01 (AHRD V1 ***- B5M9E4_SOLLC); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00022371g0001.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|0|0.25|4|435|218; (*GB) gi|255548980|ref|XP_002515546.1| (e_value=4e-42) protein with unknown function [Ricinus communis];; (*TAIR) AT3G15680.1 (e_value=3e-38) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr3:5315437-5316048 FORWARD LENGTH=164;; (*ITAG) Solyc12g006600.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1083786-1084309 transcript_region:SL2.40ch12:1083786..1084309+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00022371g0006.1 protein AED:0.35 eAED:0.48 QI:0|0|0.2|1|0.25|0.4|5|0|194; (*GB) gi|126165917|ref|YP_398849.2| (e_value=3e-54) RNA polymerase beta'' subunit [Nicotiana tomentosiformis];; (*SWP) sp|Q33C48|RPOC2_NICTO (e_value=9e-56) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=2e-36) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc03g095380.1.1 (e_value=3e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49935395-49936986 transcript_region:SL2.40ch03:49935395..49936986+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WBD0_9BORA); contains Interpro domain(s) IPR007081 RNA polymerase Rpb1, domain 5 "; GO:0006350 NbS00001320g0003.1 protein AED:0.00 eAED:0.00 QI:301|1|1|1|0|0.5|2|110|108; (*GB) gi|224107287|ref|XP_002333542.1| (e_value=2e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73120.1 (e_value=8e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27497365-27497885 REVERSE LENGTH=109;; (*ITAG) Solyc06g068660.2.1 (e_value=1e-54) genomic_reference:SL2.40ch06 gene_region:38954768-38956708 transcript_region:SL2.40ch06:38954768..38956708- functional_description:"Unknown Protein (AHRD V1)"; NbS00024517g0001.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|1|1|4|0|503; (*GB) gi|359483659|ref|XP_002274224.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84VG6|PP160_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2;; (*TAIR) AT2G17525.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7624178-7626058 FORWARD LENGTH=626;; (*ITAG) Solyc09g061760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:55904414-55906300 transcript_region:SL2.40ch09:55904414..55906300+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013406g0104.1 protein AED:0.21 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|511 NbS00013406g0110.1 protein AED:0.20 eAED:0.20 QI:99|0.85|0.25|1|1|1|8|0|834 NbS00040931g0012.1 protein AED:0.04 eAED:0.04 QI:138|1|1|1|0.75|0.8|5|172|551; (*GB) gi|255578224|ref|XP_002529980.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-12) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT4G00820.1 (e_value=3e-138) | Symbols: iqd17 | IQ-domain 17 | chr4:349300-351307 FORWARD LENGTH=534;; (*ITAG) Solyc10g005000.2.1 (e_value=2e-137) genomic_reference:SL2.40ch10 gene_region:4134-5923 transcript_region:SL2.40ch10:4134..5923- go_terms:GO:0005516 functional_description:"Os03g0648300 protein (Fragment) (AHRD V1 *--- Q0DPZ6_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00035856g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|123|405; (*GB) gi|224126397|ref|XP_002319828.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=9e-151) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G20530.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc12g005160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:117402-119412 transcript_region:SL2.40ch12:117402..119412+ go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00047215g0004.1 protein AED:0.37 eAED:0.41 QI:0|0.42|0.25|0.87|0.71|0.75|8|0|253; (*GB) gi|255549046|ref|XP_002515579.1| (e_value=3e-90) 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9T0K7|HIBC6_ARATH (e_value=5e-80) 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2;; (*TAIR) AT4G13360.1 (e_value=4e-81) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:7775133-7777701 FORWARD LENGTH=421;; (*ITAG) Solyc05g018410.1.1 (e_value=3e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20741151-20746674 transcript_region:SL2.40ch05:20741151..20746674- go_terms:GO:0003860 functional_description:"Enoyl-CoA hydratase (AHRD V1 **** A3WX21_9BRAD)"; GO:0003860 NbS00007978g0005.1 protein AED:0.43 eAED:0.84 QI:0|0|0|0.75|1|1|4|0|72 NbS00007978g0008.1 protein AED:0.01 eAED:0.01 QI:51|1|0.66|1|1|1|3|0|165; (*GB) gi|255553991|ref|XP_002518036.1| (e_value=4e-23) hypothetical protein RCOM_1177160 [Ricinus communis];; (*TAIR) AT1G06320.1 (e_value=1e-16) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:1930602-1931449 FORWARD LENGTH=195;; (*ITAG) Solyc12g010850.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3779389-3780989 transcript_region:SL2.40ch12:3779389..3780989+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007978g0012.1 protein AED:0.18 eAED:0.18 QI:316|0.88|0.9|1|0.88|0.8|10|600|569; (*GB) gi|193290660|gb|ACF17638.1| (e_value=0.0) putative ketol-acid reductoisomerase [Capsicum annuum];; (*SWP) sp|Q05758|ILV5_ARATH (e_value=0.0) Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2;; (*TAIR) AT3G58610.3 (e_value=0.0) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc12g010840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3773065-3778565 transcript_region:SL2.40ch12:3773065..3778565+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D7LW57_ARALY); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00007978g0010.1 protein AED:0.72 eAED:0.86 QI:2|0|0|0.4|0.75|0.6|5|0|327; (*GB) gi|255547866|ref|XP_002514990.1| (e_value=9e-142) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G24340.1 (e_value=4e-131) | Symbols: EMB260, EMB2421 | FAD/NAD(P)-binding oxidoreductase family protein | chr1:8635416-8638866 FORWARD LENGTH=709;; (*ITAG) Solyc05g006810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1420716-1427230 transcript_region:SL2.40ch05:1420716..1427230+ go_terms:GO:0008152,GO:0055114 functional_description:"FAD-binding monooxygenase PheA/TfdB family (AHRD V1 ***- A9GSW2_SORC5); contains Interpro domain(s) IPR002938 Monooxygenase, FAD-binding "; GO:0008152,GO:0055114 NbS00039261g0003.1 protein AED:0.08 eAED:0.09 QI:243|0.66|0.5|1|1|1|4|0|674; (*GB) gi|225460985|ref|XP_002280336.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=1e-16) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc07g064580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63884910-63888157 transcript_region:SL2.40ch07:63884910..63888157+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00006590g0007.1 protein AED:0.00 eAED:0.00 QI:223|1|1|1|1|1|2|193|176; (*GB) gi|365222932|gb|AEW69818.1| (e_value=3e-57) Hop-interacting protein THI121 [Solanum lycopersicum];; (*TAIR) AT4G27310.1 (e_value=1e-31) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc12g005660.1.1 (e_value=6e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:351057-351746 transcript_region:SL2.40ch12:351057..351746- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00006590g0010.1 protein AED:0.42 eAED:0.56 QI:0|0|0|0.55|0.5|0.66|9|0|380; (*GB) gi|77552617|gb|ABA95414.1| (e_value=1e-14) transposon protein, putative, unclassified [Oryza sativa Japonica Group];; (*ITAG) Solyc11g018650.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8853241-8853468 transcript_region:SL2.40ch11:8853241..8853468- functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 **-- FRS8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00058612g0002.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|1|1|2|0|167; (*GB) gi|14210079|gb|AAK56924.1|AF368237_1 (e_value=5e-53) circadian clock coupling factor ZGT [Nicotiana tabacum];; (*SWP) sp|Q93ZT5|EDL3_ARATH (e_value=2e-35) EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1;; (*TAIR) AT3G63060.1 (e_value=2e-36) | Symbols: EDL3 | EID1-like 3 | chr3:23300638-23301456 REVERSE LENGTH=272;; (*ITAG) Solyc09g064820.1.1 (e_value=4e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57839262-57840080 transcript_region:SL2.40ch09:57839262..57840080- functional_description:"Circadian clock coupling factor ZGT (AHRD V1 ***- Q94FM9_TOBAC)"; NbS00032338g0004.1 protein AED:0.25 eAED:0.25 QI:407|0.85|0.93|1|0.78|0.73|15|357|462; (*GB) gi|255582313|ref|XP_002531947.1| (e_value=1e-170) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9LHS0|CAP10_ARATH (e_value=2e-144) Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1;; (*TAIR) AT5G35200.1 (e_value=2e-145) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr5:13462463-13465581 REVERSE LENGTH=544;; (*ITAG) Solyc07g007820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2482207-2492806 transcript_region:SL2.40ch07:2482207..2492806+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00004922g0004.1 protein AED:0.17 eAED:0.29 QI:0|0|0|1|0|0|3|0|153; (*ITAG) Solyc04g080410.1.1 (e_value=6e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62183848-62185962 transcript_region:SL2.40ch04:62183848..62185962+ functional_description:"Myrosinase-binding protein (Fragment) (AHRD V1 **-- Q96341_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00034594g0010.1 protein AED:0.11 eAED:0.11 QI:0|1|0.85|1|1|1|7|0|831; (*GB) gi|224122858|ref|XP_002330381.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc12g005290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:177180-180465 transcript_region:SL2.40ch12:177180..180465- go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- P93068_BRAOL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00034594g0002.1 protein AED:0.17 eAED:0.17 QI:4|1|1|1|1|1|2|148|260; (*GB) gi|350539037|ref|NP_001234115.1| (e_value=4e-170) 60S ribosomal protein L8 [Solanum lycopersicum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=1e-171) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=1e-165) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc12g005330.1.1 (e_value=4e-174) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:208843-210348 transcript_region:SL2.40ch12:208843..210348+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00051369g0003.1 protein AED:0.37 eAED:0.38 QI:325|0.75|0.6|1|0.5|0.6|5|0|117; (*GB) gi|242056435|ref|XP_002457363.1| (e_value=3e-32) hypothetical protein SORBIDRAFT_03g006030 [Sorghum bicolor];; (*SWP) sp|Q7XSZ4|PAS2A_ORYSJ (e_value=2e-25) 3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica GN=PAS2A PE=2 SV=2;; (*TAIR) AT5G10480.2 (e_value=2e-24) | Symbols: PAS2, PEP | Protein-tyrosine phosphatase-like, PTPLA | chr5:3298047-3299980 REVERSE LENGTH=196;; (*ITAG) Solyc04g014370.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:4624987-4631132 transcript_region:SL2.40ch04:4624987..4631132- go_terms:GO:0005515 functional_description:"Tyrosine phosphatase-like (AHRD V1 ***- Q5ZEI6_ORYSJ); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; GO:0005515 NbS00054260g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0.33|3|0|401; (*GB) gi|584865|sp|P37122.1|C76A2_SOLME (e_value=0.0) RecName: Full=Cytochrome P450 76A2; AltName: Full=CYPLXXVIA2; AltName: Full=Cytochrome P-450EG7;; (*SWP) sp|P37122|C76A2_SOLME (e_value=0.0) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=7e-85) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc10g083700.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:62792950-62794747 transcript_region:SL2.40ch10:62792950..62794747- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009172g0010.1 protein AED:0.24 eAED:0.33 QI:0|1|0|1|1|0|2|0|245; (*GB) gi|225433914|ref|XP_002267960.1| (e_value=6e-111) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=5e-20) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT3G59470.2 (e_value=1e-91) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr3:21979099-21980097 REVERSE LENGTH=251;; (*ITAG) Solyc06g073200.2.1 (e_value=1e-76) genomic_reference:SL2.40ch06 gene_region:41496753-41499357 transcript_region:SL2.40ch06:41496753..41499357+ functional_description:"Far-red impaired responsive family protein (AHRD V1 **-- D7LWD6_ARALY); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00009172g0011.1 protein AED:0.31 eAED:0.37 QI:17|0|0|1|0|0|3|0|168; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-28) hypothetical protein [Nicotiana tabacum]; NbS00037426g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|1|0|0.33|3|0|129; (*GB) gi|224146378|ref|XP_002325986.1| (e_value=4e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71980.1 (e_value=1e-30) | Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448;; (*ITAG) Solyc11g019930.1.1 (e_value=6e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9789425-9802526 transcript_region:SL2.40ch11:9789425..9802526- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- B5X4J4_SALSA); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0008270 NbS00004769g0005.1 protein AED:0.01 eAED:0.03 QI:0|0.5|0.33|1|0|0|3|0|373; (*GB) gi|147800604|emb|CAN68579.1| (e_value=7e-136) hypothetical protein VITISV_034891 [Vitis vinifera];; (*SWP) sp|O22928|PUSH_ARATH (e_value=3e-85) Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1;; (*TAIR) AT2G30320.1 (e_value=2e-86) | Symbols: | Pseudouridine synthase family protein | chr2:12925728-12927896 REVERSE LENGTH=510;; (*ITAG) Solyc09g056260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:43665438-43678768 transcript_region:SL2.40ch09:43665438..43678768- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase family protein (AHRD V1 **** D7LBM5_ARALY); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00025105g0009.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|1|1|2|0|488; (*GB) gi|224066227|ref|XP_002302035.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q2Z2E9|SCR_IPONI (e_value=7e-128) Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1;; (*TAIR) AT3G54220.1 (e_value=3e-129) | Symbols: SCR, SGR1 | GRAS family transcription factor | chr3:20070550-20072625 FORWARD LENGTH=653;; (*ITAG) Solyc09g066450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60462297-60463799 transcript_region:SL2.40ch09:60462297..60463799- go_terms:GO:0042803 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0042803 NbS00025105g0018.1 protein AED:0.19 eAED:0.25 QI:50|0.75|0.84|1|0.75|0.61|13|273|339; (*GB) gi|297744170|emb|CBI37140.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=3e-141) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28540.1 (e_value=5e-178) | Symbols: CKL6, PAPK1 | casein kinase I-like 6 | chr4:14107284-14110511 FORWARD LENGTH=479;; (*ITAG) Solyc09g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60450504-60459771 transcript_region:SL2.40ch09:60450504..60459771- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00025105g0013.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.61|1|0.91|0.92|13|924|242; (*GB) gi|7339534|emb|CAB82852.1| (e_value=1e-152) protein kinase MK6 [Mesembryanthemum crystallinum];; (*SWP) sp|Q54Y26|NDRA_DICDI (e_value=6e-69) Probable serine/threonine-protein kinase ndrA OS=Dictyostelium discoideum GN=ndrA PE=3 SV=1;; (*TAIR) AT1G03920.1 (e_value=2e-135) | Symbols: | Protein kinase family protein | chr1:1001473-1004240 FORWARD LENGTH=569;; (*ITAG) Solyc09g066460.2.1 (e_value=2e-166) genomic_reference:SL2.40ch09 gene_region:60465187-60480440 transcript_region:SL2.40ch09:60465187..60480440- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00025105g0019.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|4|261|132; (*GB) gi|76161008|gb|ABA40467.1| (e_value=2e-72) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|P55844|RL14_PEA (e_value=2e-65) Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G20450.1 (e_value=3e-66) | Symbols: | Ribosomal protein L14 | chr2:8813923-8815071 FORWARD LENGTH=134;; (*ITAG) Solyc09g066430.2.1 (e_value=7e-77) genomic_reference:SL2.40ch09 gene_region:60447742-60449945 transcript_region:SL2.40ch09:60447742..60449945+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L14 (AHRD V1 ***- D7MEJ2_ARALY); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00025105g0020.1 protein AED:0.21 eAED:0.21 QI:379|0.66|0.25|1|0.33|0.75|4|589|99; (*GB) gi|255556538|ref|XP_002519303.1| (e_value=1e-35) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|C0LU16|MED21_ARATH (e_value=1e-35) Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1;; (*TAIR) AT4G04780.1 (e_value=1e-36) | Symbols: MED21 | mediator 21 | chr4:2432665-2433397 FORWARD LENGTH=139;; (*ITAG) Solyc02g080430.2.1 (e_value=3e-44) genomic_reference:SL2.40ch02 gene_region:39228823-39231117 transcript_region:SL2.40ch02:39228823..39231117- functional_description:"Mediator of RNA polymerase II transcription subunit 21 (AHRD V1 ***- MED21_CAEEL)"; NbC25152424g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|64 NbS00043125g0004.1 protein AED:0.14 eAED:0.14 QI:318|0.88|0.7|1|0.88|0.8|10|0|327; (*GB) gi|225440073|ref|XP_002282450.1| (e_value=8e-141) PREDICTED: transcription factor-like protein DPB [Vitis vinifera];; (*SWP) sp|Q9FNY2|DPB_ARATH (e_value=2e-116) Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1;; (*TAIR) AT5G03415.1 (e_value=1e-117) | Symbols: DPB, ATDPB | Transcription factor DP | chr5:842842-845200 FORWARD LENGTH=385;; (*ITAG) Solyc10g078430.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59571654-59579911 transcript_region:SL2.40ch10:59571654..59579911+ go_terms:GO:0003700,GO:0046982 functional_description:"Transcription factor Dp-1 (AHRD V1 **** B6UDG0_MAIZE); contains Interpro domain(s) IPR016556 Transcription factor DP, subgroup "; GO:0003700,GO:0046982 NbS00024304g0006.1 protein AED:0.31 eAED:0.31 QI:133|0.66|0.75|1|1|1|4|382|100; (*GB) gi|351725531|ref|NP_001235816.1| (e_value=1e-47) uncharacterized protein LOC100305468 [Glycine max];; (*SWP) sp|Q2HIM5|MMGT_ARATH (e_value=9e-46) Membrane magnesium transporter OS=Arabidopsis thaliana GN=At5g03345 PE=2 SV=1;; (*TAIR) AT5G03345.1 (e_value=7e-47) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:814196-815478 FORWARD LENGTH=104;; (*ITAG) Solyc09g008140.2.1 (e_value=6e-63) genomic_reference:SL2.40ch09 gene_region:1607740-1612248 transcript_region:SL2.40ch09:1607740..1612248+ go_terms:GO:0015095 functional_description:"Membrane magnesium transporter 1 (AHRD V1 **** MMGT1_DANRE); contains Interpro domain(s) IPR018937 Magnesium transporter "; GO:0015095 NbS00024304g0007.1 protein AED:0.40 eAED:0.40 QI:71|1|1|1|0|0|3|445|99; (*GB) gi|225440057|ref|XP_002282270.1| (e_value=2e-60) PREDICTED: uncharacterized protein LOC100249954 isoform 1 [Vitis vinifera];; (*TAIR) AT3G09860.1 (e_value=3e-53) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3026140-3027000 FORWARD LENGTH=98;; (*ITAG) Solyc09g008160.2.1 (e_value=6e-69) genomic_reference:SL2.40ch09 gene_region:1617337-1621480 transcript_region:SL2.40ch09:1617337..1621480+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024304g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|374; (*GB) gi|225440055|ref|XP_002282259.1| (e_value=6e-144) PREDICTED: uncharacterized protein LOC100260255 [Vitis vinifera];; (*SWP) sp|A7MAZ4|TAF8_BOVIN (e_value=5e-16) Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1;; (*TAIR) AT4G34340.1 (e_value=2e-87) | Symbols: TAF8 | TBP-associated factor 8 | chr4:16426771-16427832 REVERSE LENGTH=353;; (*ITAG) Solyc09g008150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1613203-1614324 transcript_region:SL2.40ch09:1613203..1614324- go_terms:GO:0003677 functional_description:"Transcription initiation factor TFIID subunit 8 (AHRD V1 *--- C0H851_SALSA); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; GO:0003677 NbS00049770g0004.1 protein AED:0.05 eAED:0.05 QI:35|1|0.75|1|1|0.75|4|85|282; (*ITAG) Solyc02g065340.1.1 (e_value=2e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:31083439-31084553 transcript_region:SL2.40ch02:31083439..31084553+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein REM14 (AHRD V1 ***- REM14_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00011376g0003.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|1|1|2|0|259; (*GB) gi|15224873|ref|NP_181967.1| (e_value=4e-12) cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT2G44390.1 (e_value=9e-15) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18325811-18326551 REVERSE LENGTH=209;; (*ITAG) Solyc08g014370.1.1 (e_value=5e-92) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00054858g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0|0|2|288|143; (*GB) gi|224141849|ref|XP_002324274.1| (e_value=8e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GP53|NAA50_XENLA (e_value=1e-31) N-alpha-acetyltransferase 50 OS=Xenopus laevis GN=naa50 PE=2 SV=1;; (*TAIR) AT5G11340.1 (e_value=1e-58) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:3619226-3621068 FORWARD LENGTH=164;; (*ITAG) Solyc06g065570.2.1 (e_value=8e-71) genomic_reference:SL2.40ch06 gene_region:37352391-37356280 transcript_region:SL2.40ch06:37352391..37356280- go_terms:GO:0005515 functional_description:"N-acetyltransferase (AHRD V1 ***- Q1HQ22_BOMMO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0005515 NbS00028138g0001.1 protein AED:0.30 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|583; (*GB) gi|359488082|ref|XP_002266772.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Vitis vinifera];; (*SWP) sp|Q9FRS4|PPR22_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1;; (*TAIR) AT1G08610.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:2733788-2735467 REVERSE LENGTH=559;; (*ITAG) Solyc04g010050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3352129-3356470 transcript_region:SL2.40ch04:3352129..3356470+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIT7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00028138g0006.1 protein AED:0.31 eAED:0.34 QI:0|0.4|0.33|1|0.6|0.83|6|0|229; (*GB) gi|356535208|ref|XP_003536140.1| (e_value=2e-78) PREDICTED: RNA-binding protein 42-like [Glycine max];; (*SWP) sp|Q91V81|RBM42_MOUSE (e_value=5e-40) RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1;; (*TAIR) AT3G04500.1 (e_value=2e-76) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:1212065-1213795 REVERSE LENGTH=245;; (*ITAG) Solyc04g010020.2.1 (e_value=2e-105) genomic_reference:SL2.40ch04 gene_region:3333448-3338309 transcript_region:SL2.40ch04:3333448..3338309+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- D3TPM8_GLOMM); contains Interpro domain(s) IPR015464 RNA recognition motif-related "; GO:0003676,GO:0000166 NbS00025777g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.88|0.9|1|0.88|0.9|10|734|1598; (*GB) gi|359484532|ref|XP_002280317.2| (e_value=0.0) PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Vitis vinifera];; (*SWP) sp|Q54S77|VPS15_DICDI (e_value=9e-60) Probable serine/threonine-protein kinase vps15 OS=Dictyostelium discoideum GN=vps15 PE=3 SV=1;; (*TAIR) AT4G29380.1 (e_value=0.0) | Symbols: | protein kinase family protein / WD-40 repeat family protein | chr4:14458822-14464692 FORWARD LENGTH=1494;; (*ITAG) Solyc04g012170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4451581-4460764 transcript_region:SL2.40ch04:4451581..4460764- go_terms:GO:0006468,GO:0005488,GO:0004867 functional_description:"Kinase family protein (AHRD V1 ***- D7MCM2_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488,GO:0004867 NbS00032701g0005.1 protein AED:0.18 eAED:0.18 QI:3|0.5|0.14|1|0.5|0.57|7|0|381; (*GB) gi|386870479|gb|AFJ42570.1| (e_value=0.0) beta-actin [Sesamum indicum];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00009017g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.5|1|1|1|6|0|846; (*GB) gi|224117388|ref|XP_002317562.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=5e-173) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=4e-174) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc10g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1102758-1109122 transcript_region:SL2.40ch10:1102758..1109122+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00009017g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27496|CB25_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-167) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00009017g0013.1 protein AED:0.25 eAED:0.25 QI:55|1|1|1|1|1|2|261|133; (*GB) gi|255637355|gb|ACU19007.1| (e_value=7e-48) unknown [Glycine max];; (*SWP) sp|Q9LD28|H2A6_ARATH (e_value=1e-48) Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1;; (*TAIR) AT5G54640.1 (e_value=1e-49) | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily protein | chr5:22196540-22197279 FORWARD LENGTH=130;; (*ITAG) Solyc12g005270.1.1 (e_value=4e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00009017g0014.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|48|126; (*ITAG) Solyc10g006570.2.1 (e_value=3e-22) genomic_reference:SL2.40ch10 gene_region:1122047-1123659 transcript_region:SL2.40ch10:1122047..1123659- functional_description:"Unknown Protein (AHRD V1)"; NbS00040157g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|125; (*GB) gi|358248178|ref|NP_001240088.1| (e_value=5e-59) uncharacterized protein LOC100786260 [Glycine max];; (*SWP) sp|P12470|CB25_NICPL (e_value=3e-25) Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1;; (*TAIR) AT1G76570.1 (e_value=1e-59) | Symbols: | Chlorophyll A-B binding family protein | chr1:28729132-28730754 FORWARD LENGTH=327;; (*ITAG) Solyc04g082930.1.1 (e_value=8e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:64004306-64004482 transcript_region:SL2.40ch04:64004306..64004482+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 36, chloroplastic (AHRD V1 ***- CB23_TOBAC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00009709g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|361; (*GB) gi|255585725|ref|XP_002533544.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|O81117|C94A1_VICSA (e_value=6e-98) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT2G27690.1 (e_value=1e-151) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc10g083400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62546111-62547604 transcript_region:SL2.40ch10:62546111..62547604- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018582g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|234|285; (*GB) gi|2114046|dbj|BAA20074.1| (e_value=0.0) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q7XSQ9|PIP12_ORYSJ (e_value=0.0) Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3;; (*TAIR) AT4G00430.1 (e_value=0.0) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc03g096290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51709333-51710915 transcript_region:SL2.40ch03:51709333..51710915+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- Q8W1A9_PETHY); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00045354g0003.1 protein AED:0.07 eAED:0.07 QI:84|0.85|0.86|0.93|0.78|0.66|15|771|503; (*GB) gi|359492673|ref|XP_002282958.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259179 [Vitis vinifera];; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=4e-92) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT1G45160.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:17083814-17090277 REVERSE LENGTH=1067;; (*ITAG) Solyc04g080170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62021907-62032697 transcript_region:SL2.40ch04:62021907..62032697- go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00006919g0011.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0.5|0.66|3|0|199; (*GB) gi|22128587|gb|AAM52339.1| (e_value=3e-73) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9CAN0|PPR99_ARATH (e_value=4e-41) Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1;; (*TAIR) AT1G63130.1 (e_value=3e-42) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23412854-23414746 FORWARD LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=9e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00006919g0002.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|22128591|gb|AAM52341.1| (e_value=1e-130) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=2e-73) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=1e-74) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00006919g0010.1 protein AED:0.48 eAED:0.49 QI:0|0|0|0.5|0.33|0.5|4|0|209; (*GB) gi|22128591|gb|AAM52341.1| (e_value=8e-60) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-23) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G63320.1 (e_value=4e-27) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23488884-23489530 REVERSE LENGTH=189;; (*ITAG) Solyc06g007810.1.1 (e_value=7e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1745327-1746133 transcript_region:SL2.40ch06:1745327..1746133- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00006919g0003.1 protein AED:0.65 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|186; (*GB) gi|255764587|gb|ACU33853.1| (e_value=8e-48) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-28) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=7e-30) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007280.2.1 (e_value=1e-52) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00006919g0009.1 protein AED:0.39 eAED:0.44 QI:0|0|0|1|0|0|3|0|283; (*GB) gi|255764587|gb|ACU33853.1| (e_value=3e-107) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=5e-41) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=7e-42) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00030553g0010.1 protein AED:0.21 eAED:0.21 QI:3368|0|1|1|1|1|2|365|156; (*GB) gi|255577193|ref|XP_002529479.1| (e_value=1e-13) Transcription factor RF2a, putative [Ricinus communis];; (*ITAG) Solyc06g053350.2.1 (e_value=2e-21) genomic_reference:SL2.40ch06 gene_region:32588534-32595646 transcript_region:SL2.40ch06:32588534..32595646+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00014848g0117.1 protein AED:0.08 eAED:0.08 QI:208|1|1|1|1|1|9|989|386 NbS00014848g0118.1 protein AED:0.14 eAED:0.14 QI:333|0.84|0.88|1|0.88|0.92|27|432|1058 NbS00014848g0108.1 protein AED:0.26 eAED:0.26 QI:78|0.5|0.57|1|0.66|0.71|7|543|165 NbS00014848g0119.1 protein AED:0.07 eAED:0.08 QI:0|1|0.83|1|1|1|6|569|741 NbS00014848g0101.1 protein AED:0.11 eAED:0.11 QI:0|0.42|0.37|1|1|1|8|0|1400 NbS00006259g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|136; (*ITAG) Solyc08g075860.2.1 (e_value=3e-19) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00006259g0005.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.4|1|1|5|0|115 NbS00037687g0002.1 protein AED:0.10 eAED:0.11 QI:168|0|0|1|1|1|2|0|291; (*GB) gi|9954116|gb|AAG08961.1|AF122053_1 (e_value=2e-105) tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=1e-52) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=5e-55) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc04g079360.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61482058-61482816 transcript_region:SL2.40ch04:61482058..61482816+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- O23160_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00005769g0008.1 protein AED:0.34 eAED:0.36 QI:0|0.9|0.72|1|0.7|0.81|11|0|319; (*GB) gi|225430912|ref|XP_002276816.1| (e_value=7e-179) PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera];; (*SWP) sp|O80796|VIPP1_ARATH (e_value=6e-160) Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1;; (*TAIR) AT1G65260.1 (e_value=5e-161) | Symbols: PTAC4, VIPP1 | plastid transcriptionally active 4 | chr1:24236329-24240428 FORWARD LENGTH=330;; (*ITAG) Solyc11g008990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3137482-3143897 transcript_region:SL2.40ch11:3137482..3143897- functional_description:"Phage shock protein A PspA (AHRD V1 ***- B7K4B0_CYAP8); contains Interpro domain(s) IPR007157 PspA/IM30 "; NbS00005769g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|4|0|371; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-76) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00023665g0004.1 protein AED:0.38 eAED:0.47 QI:0|0.25|0|0.8|0|0|5|0|178; (*GB) gi|124484393|dbj|BAF46307.1| (e_value=6e-21) integral membrane family protein [Ipomoea nil];; (*SWP) sp|A2PZE5|CSPL1_IPONI (e_value=7e-22) CASP-like protein IN26 (Fragment) OS=Ipomoea nil GN=IN26 PE=2 SV=2;; (*TAIR) AT3G06390.1 (e_value=4e-16) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:1938913-1939707 REVERSE LENGTH=199;; (*ITAG) Solyc01g067300.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:68108199-68112618 transcript_region:SL2.40ch01:68108199..68112618- functional_description:"UPF0497 membrane protein 13 (AHRD V1 ***- U497D_SOYBN); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00023665g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|416; (*GB) gi|224100353|ref|XP_002311844.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G18660.1 (e_value=0.0) | Symbols: PCB2 | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6220872-6222125 REVERSE LENGTH=417;; (*ITAG) Solyc01g067290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68104891-68106498 transcript_region:SL2.40ch01:68104891..68106498+ go_terms:GO:0051744 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C8RY11_9RHOB); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0051744 NbS00006728g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.66|1|1|1|3|518|865; (*GB) gi|147861933|emb|CAN78769.1| (e_value=0.0) hypothetical protein VITISV_024248 [Vitis vinifera];; (*SWP) sp|Q9LRA7|TPS9_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=1 SV=1;; (*TAIR) AT1G23870.1 (e_value=0.0) | Symbols: ATTPS9, TPS9 | trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867;; (*ITAG) Solyc05g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:574848-578018 transcript_region:SL2.40ch05:574848..578018+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00009773g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0|0.75|0|0|4|0|219; (*GB) gi|356503299|ref|XP_003520448.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100809118 [Glycine max];; (*TAIR) AT3G17380.1 (e_value=9e-34) | Symbols: | TRAF-like family protein | chr3:5950240-5952124 FORWARD LENGTH=309;; (*ITAG) Solyc04g008530.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2154141-2155727 transcript_region:SL2.40ch04:2154141..2155727+ functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00007499g0004.1 protein AED:0.10 eAED:0.12 QI:0|1|0.5|1|1|0.75|4|0|917; (*GB) gi|225440123|ref|XP_002277489.1| (e_value=0.0) PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1-like [Vitis vinifera];; (*SWP) sp|Q9FF61|SM3L1_ARATH (e_value=0.0) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1;; (*TAIR) AT5G05130.1 (e_value=0.0) | Symbols: | DNA/RNA helicase protein | chr5:1512173-1514918 FORWARD LENGTH=862;; (*ITAG) Solyc12g020110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14050996-14056328 transcript_region:SL2.40ch12:14050996..14056328+ go_terms:GO:0003702,GO:0016563,GO:0016887 functional_description:"DNA repair protein rad5 (AHRD V1 **-- C5FQX2_NANOT); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0003702,GO:0016563,GO:0016887 NbS00001119g0007.1 protein AED:0.14 eAED:0.14 QI:68|1|0.8|1|1|1|5|0|308; (*GB) gi|213385143|dbj|BAG84267.1| (e_value=0.0) phenylcoumaran benzylic ether reductase [Nicotiana tabacum];; (*SWP) sp|P52577|IFRH_ARATH (e_value=3e-171) Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1;; (*TAIR) AT1G75280.1 (e_value=2e-172) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr1:28252030-28253355 FORWARD LENGTH=310;; (*ITAG) Solyc04g080550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62277983-62280069 transcript_region:SL2.40ch04:62277983..62280069+ go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00005191g0010.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|494; (*GB) gi|350539914|ref|NP_001233806.1| (e_value=4e-114) TCP transcription factor 12 [Solanum lycopersicum];; (*SWP) sp|Q9LQF0|TCP23_ARATH (e_value=2e-48) Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1;; (*TAIR) AT1G35560.1 (e_value=1e-49) | Symbols: | TCP family transcription factor | chr1:13116099-13117124 REVERSE LENGTH=341;; (*ITAG) Solyc11g020670.1.1 (e_value=1e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11820759-11821883 transcript_region:SL2.40ch11:11820759..11821883- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00005191g0009.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|1|1|2|0|85; (*GB) gi|224145162|ref|XP_002325548.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72020.1 (e_value=6e-28) | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27109521-27110327 REVERSE LENGTH=97;; (*ITAG) Solyc06g065180.2.1 (e_value=4e-44) genomic_reference:SL2.40ch06 gene_region:37028954-37032350 transcript_region:SL2.40ch06:37028954..37032350+ functional_description:"SLL1 protein (AHRD V1 ***- A5X2S6_9ERIC)"; NbS00005191g0016.1 protein AED:0.16 eAED:0.16 QI:0|1|0.6|1|0.75|0.8|5|0|305; (*GB) gi|297846616|ref|XP_002891189.1| (e_value=4e-78) hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8IYD8|FANCM_HUMAN (e_value=9e-42) Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2;; (*TAIR) AT1G35530.1 (e_value=6e-76) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1324;; (*ITAG) Solyc11g020750.1.1 (e_value=9e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11957851-11964211 transcript_region:SL2.40ch11:11957851..11964211+ go_terms:GO:0008026 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00005191g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|1|4|0|552; (*GB) gi|225460726|ref|XP_002271919.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257298 [Vitis vinifera];; (*TAIR) AT4G09510.1 (e_value=0.0) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021312-6023310 REVERSE LENGTH=558;; (*ITAG) Solyc11g020610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11747788-11752875 transcript_region:SL2.40ch11:11747788..11752875+ go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00060385g0002.1 protein AED:0.01 eAED:0.01 QI:290|1|1|1|1|1|3|1059|144; (*GB) gi|356531421|ref|XP_003534276.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100791221 [Glycine max];; (*TAIR) AT4G17900.1 (e_value=3e-86) | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227;; (*ITAG) Solyc06g061240.2.1 (e_value=3e-93) genomic_reference:SL2.40ch06 gene_region:35636566-35637942 transcript_region:SL2.40ch06:35636566..35637942+ go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **** D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00017828g0004.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|1|1|3|0|254; (*ITAG) Solyc10g079220.2.1 (e_value=2e-13) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00045570g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|0|341; (*GB) gi|297739304|emb|CBI28955.3| (e_value=1e-152) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=3e-130) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=3e-131) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc08g075830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57086913-57088336 transcript_region:SL2.40ch08:57086913..57088336+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00031830g0001.1 protein AED:0.09 eAED:0.09 QI:13|1|1|1|1|1|4|224|327; (*GB) gi|359497056|ref|XP_002263033.2| (e_value=1e-178) PREDICTED: peroxidase 10-like [Vitis vinifera];; (*SWP) sp|Q9FX85|PER10_ARATH (e_value=6e-144) Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1;; (*TAIR) AT1G49570.1 (e_value=5e-145) | Symbols: | Peroxidase superfamily protein | chr1:18347077-18348712 FORWARD LENGTH=350;; (*ITAG) Solyc02g090450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46577909-46579478 transcript_region:SL2.40ch02:46577909..46579478+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q58GF4_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00050847g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|356565248|ref|XP_003550854.1| (e_value=1e-169) PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max];; (*SWP) sp|Q8H5F8|ADPRM_ORYSJ (e_value=3e-153) Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica GN=Os07g0688000 PE=2 SV=1;; (*TAIR) AT4G24730.3 (e_value=2e-147) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12752696-12753631 REVERSE LENGTH=311;; (*ITAG) Solyc03g112080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56665004-56665963 transcript_region:SL2.40ch03:56665004..56665963+ go_terms:GO:0004722 functional_description:"Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (AHRD V1 **-- ADPRM_BOVIN); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00050847g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|0.9|0.90|11|373|430; (*GB) gi|225456860|ref|XP_002279764.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AFC2 [Vitis vinifera];; (*SWP) sp|P51567|AFC2_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1;; (*TAIR) AT4G24740.1 (e_value=0.0) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427;; (*ITAG) Solyc03g112050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56639937-56643720 transcript_region:SL2.40ch03:56639937..56643720+ go_terms:GO:0004674,GO:0004715 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0004715 NbS00048084g0005.1 protein AED:0.11 eAED:0.11 QI:317|1|1|1|0.66|0.5|4|187|606; (*GB) gi|297804044|ref|XP_002869906.1| (e_value=0.0) hypothetical protein ARALYDRAFT_329490 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00026375g0006.1 protein AED:0.08 eAED:0.08 QI:216|0.8|0.66|1|0|0.16|6|0|603; (*GB) gi|225431525|ref|XP_002275240.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248912 [Vitis vinifera];; (*SWP) sp|Q9LSB1|GUX1_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1;; (*TAIR) AT3G18660.2 (e_value=0.0) | Symbols: PGSIP1, GUX1 | plant glycogenin-like starch initiation protein 1 | chr3:6419211-6421959 REVERSE LENGTH=659;; (*ITAG) Solyc11g005760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:593380-596157 transcript_region:SL2.40ch11:593380..596157- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00004108g0002.1 protein AED:0.01 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|147768608|emb|CAN67163.1| (e_value=5e-13) hypothetical protein VITISV_015728 [Vitis vinifera];; (*ITAG) Solyc01g095880.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:78774213-78774752 transcript_region:SL2.40ch01:78774213..78774752+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At2g31720 (AHRD V1 ***- Y2172_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00004108g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.62|0.87|1|1|8|0|304; (*GB) gi|356560274|ref|XP_003548418.1| (e_value=3e-150) PREDICTED: probable F-box protein At3g61730-like [Glycine max];; (*SWP) sp|Q9M365|FB331_ARATH (e_value=9e-137) Probable F-box protein At3g61730 OS=Arabidopsis thaliana GN=RMF PE=1 SV=2;; (*TAIR) AT5G36000.1 (e_value=4e-132) | Symbols: | BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14139996-14141892 FORWARD LENGTH=355;; (*ITAG) Solyc01g095870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78766347-78769896 transcript_region:SL2.40ch01:78766347..78769896- functional_description:"Unknown Protein (AHRD V1)"; NbS00008716g0004.1 protein AED:0.17 eAED:0.22 QI:189|0.72|0.58|1|0.45|0.41|12|0|404; (*GB) gi|225460933|ref|XP_002279440.1| (e_value=6e-110) PREDICTED: mutS protein homolog 5-like [Vitis vinifera];; (*SWP) sp|Q9QUM7|MSH5_MOUSE (e_value=4e-12) MutS protein homolog 5 OS=Mus musculus GN=Msh5 PE=2 SV=1;; (*TAIR) AT3G20475.1 (e_value=6e-101) | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143546-7150811 FORWARD LENGTH=807;; (*ITAG) Solyc10g018540.1.1 (e_value=4e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8654988-8661854 transcript_region:SL2.40ch10:8654988..8661854- go_terms:GO:0006298 functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-*- A6DUF8_9BACT); contains Interpro domain(s) IPR007696 DNA mismatch repair protein MutS, core "; GO:0006298 NbS00008716g0002.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|69; (*GB) gi|297737456|emb|CBI26657.3| (e_value=2e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g018530.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8636113-8651968 transcript_region:SL2.40ch10:8636113..8651968- go_terms:GO:0003684 functional_description:"DNA mismatch repair protein MutS (AHRD V1 **** D9S3H0_9FIRM); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0003684 NbS00033260g0005.1 protein AED:0.33 eAED:0.37 QI:143|0.81|0.83|1|0.63|0.75|12|0|336; (*GB) gi|225440874|ref|XP_002282520.1| (e_value=4e-114) PREDICTED: uncharacterized protein LOC100261348 [Vitis vinifera];; (*TAIR) AT5G03880.1 (e_value=3e-98) | Symbols: | Thioredoxin family protein | chr5:1038674-1041453 REVERSE LENGTH=339;; (*ITAG) Solyc09g009820.2.1 (e_value=3e-137) genomic_reference:SL2.40ch09 gene_region:3308057-3320608 transcript_region:SL2.40ch09:3308057..3320608+ go_terms:GO:0045454 functional_description:"Glutathione S-transferase domain protein (AHRD V1 *--- C6RLV9_ACIRA); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0045454 NbS00033885g0003.1 protein AED:0.04 eAED:0.04 QI:163|1|1|1|1|1|7|338|341; (*GB) gi|224109442|ref|XP_002315196.1| (e_value=1e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=2e-62) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT3G53940.1 (e_value=4e-157) | Symbols: | Mitochondrial substrate carrier family protein | chr3:19971258-19973564 REVERSE LENGTH=365;; (*ITAG) Solyc09g011360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4697445-4700991 transcript_region:SL2.40ch09:4697445..4700991- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10NJ7_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00031520g0009.1 protein AED:0.26 eAED:0.26 QI:0|1|0.9|1|0.77|0.9|10|433|457; (*GB) gi|357507681|ref|XP_003624129.1| (e_value=1e-173) ABC transporter [Medicago truncatula];; (*SWP) sp|Q9AT00|AB13I_ARATH (e_value=1e-168) Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1;; (*TAIR) AT1G65410.1 (e_value=8e-170) | Symbols: ATNAP11, TGD3, NAP11 | non-intrinsic ABC protein 11 | chr1:24295362-24297332 FORWARD LENGTH=345;; (*ITAG) Solyc04g056650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53778765-53790158 transcript_region:SL2.40ch04:53778765..53790158- go_terms:GO:0005515 functional_description:"ABC transporter ATP-binding protein (AHRD V1 **** D4ZR39_SPIPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0005515 NbS00031520g0002.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|757; (*GB) gi|339790473|dbj|BAK52393.1| (e_value=0.0) leucine rich repeat receptor like protein CLAVATA2 [Solanum pennellii];; (*SWP) sp|O80809|CLV2_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1;; (*TAIR) AT1G65380.1 (e_value=0.0) | Symbols: CLV2, AtRLP10 | Leucine-rich repeat (LRR) family protein | chr1:24286943-24289105 FORWARD LENGTH=720;; (*ITAG) Solyc04g056640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53775339-53777579 transcript_region:SL2.40ch04:53775339..53777579+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00020069g0014.1 protein AED:0.29 eAED:0.29 QI:473|0.33|0.25|1|0.33|0.75|4|0|171 NbS00020069g0018.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0.33|0.25|4|0|800; (*GB) gi|359473521|ref|XP_002273398.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At2g02150-like [Vitis vinifera];; (*SWP) sp|P0C894|PP143_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1;; (*TAIR) AT2G02150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:550340-552625 REVERSE LENGTH=761;; (*ITAG) Solyc02g021280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13109170-13111449 transcript_region:SL2.40ch02:13109170..13111449- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LLV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00020069g0017.1 protein AED:0.25 eAED:0.25 QI:293|1|0.95|1|0.90|1|22|0|1139; (*GB) gi|193290694|gb|ACF17655.1| (e_value=0.0) putative ferredoxin-dependent glutamate synthase 1 [Capsicum annuum];; (*SWP) sp|Q9ZNZ7|GLTB1_ARATH (e_value=0.0) Ferredoxin-dependent glutamate synthase 1, chloroplastic OS=Arabidopsis thaliana GN=GLU1 PE=1 SV=2;; (*TAIR) AT5G04140.1 (e_value=0.0) | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate synthase 1 | chr5:1130031-1138186 FORWARD LENGTH=1622;; (*ITAG) Solyc03g063560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:32287538-32328106 transcript_region:SL2.40ch03:32287538..32328106- go_terms:GO:0005515 functional_description:"Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C "; GO:0005515 NbS00012641g0011.1 protein AED:0.04 eAED:0.04 QI:352|0|0.5|1|0|0|2|0|222; (*GB) gi|57012880|sp|Q9SXS8.1|ERF3_TOBAC (e_value=2e-78) RecName: Full=Ethylene-responsive transcription factor 3; AltName: Full=Ethylene-responsive element-binding factor 3 homolog; AltName: Full=Ethylene-responsive element-binding factor 5; Short=EREBP-5; AltName: Full=NtERF5;; (*SWP) sp|Q9SXS8|ERF3_TOBAC (e_value=6e-80) Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1;; (*TAIR) AT1G50640.1 (e_value=1e-25) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc07g064890.1.1 (e_value=8e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64094550-64095272 transcript_region:SL2.40ch07:64094550..64095272+ go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene responsive transcription factor 3a (AHRD V1 **** C0J9I5_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003700 NbS00012641g0008.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0|2|112|340; (*GB) gi|326534432|gb|ADZ76434.1| (e_value=9e-148) myricetin O-methyltransferase 2 [Solanum habrochaites];; (*SWP) sp|B0EXJ8|HTOMT_CATRO (e_value=1e-91) Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=2e-36) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc06g064500.2.1 (e_value=1e-150) genomic_reference:SL2.40ch06 gene_region:36549724-36552243 transcript_region:SL2.40ch06:36549724..36552243- go_terms:GO:0030755,GO:0033799 functional_description:"O-methyltransferase (AHRD V1 **** A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0030755,GO:0033799 NbS00012641g0007.1 protein AED:0.26 eAED:0.27 QI:0|0.5|0.2|1|0.75|0.6|5|0|260; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=3e-116) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=8e-118) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=2e-57) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=5e-119) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00028416g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.6|0.5|0.6|5|0|370; (*GB) gi|356557662|ref|XP_003547134.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100804245 [Glycine max];; (*TAIR) AT1G61215.1 (e_value=2e-17) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475;; (*ITAG) Solyc02g078810.2.1 (e_value=5e-79) genomic_reference:SL2.40ch02 gene_region:38041787-38045657 transcript_region:SL2.40ch02:38041787..38045657+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9H245_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00019378g0003.1 protein AED:0.27 eAED:0.27 QI:222|1|1|1|0.87|0.77|9|266|325; (*GB) gi|225442373|ref|XP_002281479.1| (e_value=1e-164) PREDICTED: uncharacterized protein LOC100263418 [Vitis vinifera];; (*SWP) sp|Q8CDF7|EXD1_MOUSE (e_value=2e-15) Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus GN=Exd1 PE=2 SV=1;; (*TAIR) AT2G25910.1 (e_value=4e-144) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=341;; (*ITAG) Solyc03g121250.2.1 (e_value=4e-165) genomic_reference:SL2.40ch03 gene_region:63467090-63473364 transcript_region:SL2.40ch03:63467090..63473364- go_terms:GO:0003676,GO:0003723,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 ***- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0003723,GO:0005622 NbS00005930g0008.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0|1|0.5|0.66|3|0|299; (*GB) gi|359495241|ref|XP_003634942.1| (e_value=7e-112) PREDICTED: uncharacterized protein LOC100248314 isoform 2 [Vitis vinifera];; (*TAIR) AT1G71500.1 (e_value=4e-108) | Symbols: | Rieske (2Fe-2S) domain-containing protein | chr1:26936084-26937331 FORWARD LENGTH=287;; (*ITAG) Solyc11g042640.1.1 (e_value=2e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:32808211-32811406 transcript_region:SL2.40ch11:32808211..32811406+ go_terms:GO:0055114 functional_description:"Rieske (2Fe-2S) domain protein (AHRD V1 *-*- C7QP67_CYAP0); contains Interpro domain(s) IPR017941 Rieske [2Fe-2S] iron-sulphur domain "; GO:0055114 NbS00031211g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.87|1|1|1|8|373|435; (*GB) gi|350539485|ref|NP_001233891.1| (e_value=0.0) AP2 transcription factor SlAP2e [Solanum lycopersicum];; (*SWP) sp|Q9SK03|RAP27_ARATH (e_value=3e-78) Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2;; (*TAIR) AT2G28550.1 (e_value=2e-79) | Symbols: RAP2.7, TOE1 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=449;; (*ITAG) Solyc06g075510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43255163-43258759 transcript_region:SL2.40ch06:43255163..43258759- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00031211g0101.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|74 NbS00031211g0107.1 protein AED:0.34 eAED:0.39 QI:0|1|0.8|1|1|1|10|0|392 NbS00005983g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.94|0.88|1|0.82|0.72|18|814|540; (*GB) gi|224061230|ref|XP_002300381.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P94464|RSMB_BACSU (e_value=4e-60) Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2;; (*TAIR) AT3G13180.1 (e_value=0.0) | Symbols: | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | chr3:4236326-4239966 REVERSE LENGTH=523;; (*ITAG) Solyc12g015710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5687873-5695832 transcript_region:SL2.40ch12:5687873..5695832- go_terms:GO:0006355 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 ***- D5H7I5_SALRM); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0006355 NbS00032999g0005.1 protein AED:0.32 eAED:0.32 QI:81|0.83|0.42|1|0.83|0.71|7|122|252; (*GB) gi|147865523|emb|CAN81560.1| (e_value=1e-82) hypothetical protein VITISV_009902 [Vitis vinifera];; (*SWP) sp|Q56XP9|ERFL1_ARATH (e_value=3e-45) Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2;; (*TAIR) AT4G13040.1 (e_value=2e-46) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:7614100-7615310 FORWARD LENGTH=226;; (*ITAG) Solyc09g059510.2.1 (e_value=2e-94) genomic_reference:SL2.40ch09 gene_region:50196312-50202155 transcript_region:SL2.40ch09:50196312..50202155- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor-like protein At4g13040 (AHRD V1 *--- ERFL1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00032999g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|178; (*ITAG) Solyc07g018060.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8977086-8979008 transcript_region:SL2.40ch07:8977086..8979008- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006643g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|4105784|gb|AAD02549.1| (e_value=7e-38) PGPS/D7 [Petunia x hybrida];; (*ITAG) Solyc10g081670.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62020522-62025047 transcript_region:SL2.40ch10:62020522..62025047- go_terms:GO:0030599 functional_description:"PGPS/D7 (AHRD V1 ***- Q9ZNX3_PETHY); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00006643g0013.1 protein AED:0.23 eAED:0.23 QI:141|1|1|1|0.66|0.7|10|1710|466; (*GB) gi|75105381|sp|Q5IH14.1|SPP1_TOBAC (e_value=0.0) RecName: Full=Sucrose-phosphatase 1; Short=NtSPP1;; (*SWP) sp|Q5IH14|SPP1_TOBAC (e_value=0.0) Sucrose-phosphatase 1 OS=Nicotiana tabacum GN=SPP1 PE=2 SV=1;; (*TAIR) AT2G35840.3 (e_value=0.0) | Symbols: | Sucrose-6F-phosphate phosphohydrolase family protein | chr2:15053952-15055776 FORWARD LENGTH=422;; (*ITAG) Solyc01g006740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1336414-1340710 transcript_region:SL2.40ch01:1336414..1340710- go_terms:GO:0008152,GO:0016791,GO:0005986 functional_description:"Sucrose phosphate phosphatase (AHRD V1 ***- Q5J3P0_MALDO); contains Interpro domain(s) IPR012847 Sucrose phosphatase, plant and cyanobacteria "; GO:0008152,GO:0016791,GO:0005986 NbS00006643g0012.1 protein AED:0.21 eAED:0.21 QI:108|1|1|1|0.9|0.81|11|474|743; (*GB) gi|224138238|ref|XP_002322764.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q93YS4|AB22G_ARATH (e_value=0.0) ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1;; (*TAIR) AT5G06530.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:1990060-1994605 REVERSE LENGTH=751;; (*ITAG) Solyc01g006720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1301729-1309554 transcript_region:SL2.40ch01:1301729..1309554- go_terms:GO:0008559 functional_description:"ABC transporter G family member 22 (AHRD V1 ***- AB22G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00017630g0002.1 protein AED:0.05 eAED:0.12 QI:225|0|0.5|1|0|0.5|2|112|393; (*GB) gi|122211500|sp|Q307Y9.1|METK1_SOLTU (e_value=0.0) RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1;; (*SWP) sp|Q307Y9|METK1_SOLTU (e_value=0.0) S-adenosylmethionine synthase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1;; (*TAIR) AT4G01850.2 (e_value=0.0) | Symbols: SAM-2, MAT2, SAM2, AtSAM2 | S-adenosylmethionine synthetase 2 | chr4:796298-797479 REVERSE LENGTH=393;; (*ITAG) Solyc01g101060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00017630g0007.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|177; (*GB) gi|75321780|sp|Q5W274.1|PDR3_TOBAC (e_value=3e-107) RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3;; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=1e-108) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1;; (*TAIR) AT3G53480.1 (e_value=3e-80) | Symbols: PIS1, PDR9, ATPDR9, ABCG37 | pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450;; (*ITAG) Solyc01g101070.2.1 (e_value=1e-108) genomic_reference:SL2.40ch01 gene_region:82682230-82692010 transcript_region:SL2.40ch01:82682230..82692010- go_terms:GO:0042626 functional_description:"ABC transporter G family member 37 (AHRD V1 ***- AB37G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00008772g0009.1 protein AED:0.21 eAED:0.24 QI:0|1|0.5|1|1|1|4|0|611; (*GB) gi|225442649|ref|XP_002279674.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241173 [Vitis vinifera];; (*TAIR) AT1G52320.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT5G25590.1); Has 8725 Blast hits to 7476 proteins in 620 species: Archae - 10; Bacteria - 622; Metazoa - 3286; Fungi - 1319; Plants - 1442; Viruses - 221; Other Eukaryotes - 1825 (source: NCBI BLink). | chr1:19484421-19487204 FORWARD LENGTH=798;; (*ITAG) Solyc08g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54382711-54391510 transcript_region:SL2.40ch08:54382711..54391510- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 **-- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00008772g0012.1 protein AED:0.36 eAED:0.39 QI:125|0.77|0.9|1|0.77|0.9|10|38|378; (*GB) gi|297743282|emb|CBI36149.3| (e_value=1e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R1C6|MET22_MOUSE (e_value=2e-37) Methyltransferase-like protein 22 OS=Mus musculus GN=Mettl22 PE=2 SV=1;; (*TAIR) AT1G79915.1 (e_value=6e-100) | Symbols: | Putative methyltransferase family protein | chr1:30057220-30058657 FORWARD LENGTH=312;; (*ITAG) Solyc03g120130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62666993-62672504 transcript_region:SL2.40ch03:62666993..62672504+ functional_description:"Rapid response to glucose protein 1 (AHRD V1 *-*- RRG1_SCHPO); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00008772g0004.1 protein AED:0.52 eAED:0.65 QI:0|0|0|0.83|1|1|6|0|266; (*GB) gi|225442653|ref|XP_002279706.1| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100258307 [Vitis vinifera];; (*TAIR) AT4G13270.1 (e_value=1e-47) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:7731280-7732902 FORWARD LENGTH=215;; (*ITAG) Solyc03g120150.2.1 (e_value=4e-91) genomic_reference:SL2.40ch03 gene_region:62681690-62684781 transcript_region:SL2.40ch03:62681690..62684781+ functional_description:"Plant cell wall protein SlTFR88 (AHRD V1 ***- Q19QU4_SOLLC)"; NbS00008772g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|86; (*ITAG) Solyc03g120160.1.1 (e_value=3e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62686104-62686349 transcript_region:SL2.40ch03:62686104..62686349- functional_description:"Unknown Protein (AHRD V1)"; NbS00058907g0006.1 protein AED:0.24 eAED:0.24 QI:63|0.85|0.8|1|0.64|0.73|15|262|752; (*GB) gi|225443782|ref|XP_002266057.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Vitis vinifera];; (*SWP) sp|C0LGQ4|MRH1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1;; (*TAIR) AT4G18640.1 (e_value=0.0) | Symbols: MRH1 | Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678;; (*ITAG) Solyc02g021590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13946008-13952021 transcript_region:SL2.40ch02:13946008..13952021+ go_terms:GO:0005515,GO:0006468 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0006468 NbS00028858g0014.1 protein AED:0.19 eAED:0.21 QI:202|0.86|0.9|1|0.68|0.8|30|398|1294; (*GB) gi|359481103|ref|XP_002263641.2| (e_value=0.0) PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera];; (*SWP) sp|Q9Y2L5|TPPC8_HUMAN (e_value=3e-54) Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2;; (*TAIR) AT5G16280.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5323377-5331345 REVERSE LENGTH=1272;; (*ITAG) Solyc01g006960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1520515-1539892 transcript_region:SL2.40ch01:1520515..1539892- functional_description:"Transport protein particle subunit trs85-2 (AHRD V1 *--- TR852_SCHPO)"; NbS00028858g0008.1 protein AED:0.54 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|92; (*GB) gi|357467739|ref|XP_003604154.1| (e_value=7e-24) Ycf68 protein [Medicago truncatula];; (*ITAG) Solyc12g044980.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45800505-45800672 transcript_region:SL2.40ch12:45800505..45800672- functional_description:"Unknown Protein (AHRD V1)"; NbS00057611g0003.1 protein AED:0.24 eAED:0.30 QI:35|0.33|0|1|0|0|4|0|412; (*ITAG) Solyc12g097010.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64027833-64031052 transcript_region:SL2.40ch12:64027833..64031052- go_terms:GO:0030275,GO:0000166 functional_description:"Lrr, resistance protein fragment"; GO:0030275,GO:0000166 NbS00043874g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|424; (*GB) gi|356523179|ref|XP_003530219.1| (e_value=0.0) PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=5e-160) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=4e-161) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc10g084860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63570163-63572223 transcript_region:SL2.40ch10:63570163..63572223- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00043874g0007.1 protein AED:0.34 eAED:0.34 QI:138|0.85|1|1|0.71|0.87|8|268|242; (*GB) gi|147808028|emb|CAN77671.1| (e_value=4e-124) hypothetical protein VITISV_019443 [Vitis vinifera];; (*SWP) sp|Q9CPY6|CQ039_MOUSE (e_value=7e-28) Uncharacterized protein C17orf39 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT2G37680.1 (e_value=1e-114) | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:15803500-15805515 REVERSE LENGTH=215;; (*ITAG) Solyc10g084850.1.1 (e_value=4e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63560256-63564942 transcript_region:SL2.40ch10:63560256..63564942- functional_description:"Vacuolar import and degradation protein 24 (AHRD V1 **-- C5FHJ7_NANOT); contains Interpro domain(s) IPR018618 Vacuolar import and degradation protein Vid24 "; NbS00007285g0008.1 protein AED:0.34 eAED:0.36 QI:0|0.71|0.73|0.93|0.85|0.86|15|431|407; (*GB) gi|225453987|ref|XP_002274528.1| (e_value=0.0) PREDICTED: methionine aminopeptidase 1A [Vitis vinifera];; (*SWP) sp|Q9SLN5|AMP1A_ARATH (e_value=0.0) Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1;; (*TAIR) AT2G45240.1 (e_value=0.0) | Symbols: MAP1A | methionine aminopeptidase 1A | chr2:18656059-18658906 FORWARD LENGTH=398;; (*ITAG) Solyc01g091070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76550313-76559336 transcript_region:SL2.40ch01:76550313..76559336+ go_terms:GO:0006508,GO:0009987 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9RD92_RICCO); contains Interpro domain(s) IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 "; GO:0006508,GO:0009987 NbS00007285g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=3e-54) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-42) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G25260.1 (e_value=1e-44) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12936005-12936610 REVERSE LENGTH=201;; (*ITAG) Solyc01g091100.2.1 (e_value=2e-101) genomic_reference:SL2.40ch01 gene_region:76575646-76576533 transcript_region:SL2.40ch01:76575646..76576533- go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00031254g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.87|1|1|1|8|130|209; (*GB) gi|2500047|sp|Q43187.1|IPYR_SOLTU (e_value=9e-140) RecName: Full=Soluble inorganic pyrophosphatase; AltName: Full=Pyrophosphate phospho-hydrolase; Short=PPase;; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=3e-141) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT1G01050.1 (e_value=3e-137) | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31382-32670 REVERSE LENGTH=212;; (*ITAG) Solyc08g083370.2.1 (e_value=6e-144) genomic_reference:SL2.40ch08 gene_region:62998660-63000055 transcript_region:SL2.40ch08:62998660..63000055+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase (AHRD V1 **** Q2HTA8_MEDTR); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00002293g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.6|1|0.33|0.5|10|420|319; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=0.0) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=0.0) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.2 (e_value=5e-172) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc12g042740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00019601g0012.1 protein AED:0.31 eAED:0.31 QI:0|1|0.8|1|0.75|0.6|5|580|241; (*GB) gi|13278055|gb|AAH03883.1| (e_value=5e-76) CDNA sequence BC003883 [Mus musculus];; (*SWP) sp|Q9ZQW8|U2AFA_ORYSJ (e_value=5e-60) Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=2e-60) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc11g066830.1.1 (e_value=9e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00026165g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|133; (*GB) gi|242040867|ref|XP_002467828.1| (e_value=1e-78) hypothetical protein SORBIDRAFT_01g034750 [Sorghum bicolor];; (*SWP) sp|Q10L32|MSRB5_ORYSJ (e_value=1e-79) Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1;; (*TAIR) AT4G21860.3 (e_value=5e-76) | Symbols: MSRB2 | methionine sulfoxide reductase B 2 | chr4:11600238-11601507 REVERSE LENGTH=202;; (*ITAG) Solyc01g080410.2.1 (e_value=6e-83) genomic_reference:SL2.40ch01 gene_region:72165087-72166165 transcript_region:SL2.40ch01:72165087..72166165+ go_terms:GO:0055114 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 ***- B6T2C6_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0055114 NbS00010879g0020.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|2|274|300; (*GB) gi|296087353|emb|CBI33727.3| (e_value=7e-32) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g092720.1.1 (e_value=6e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:48289282-48290199 transcript_region:SL2.40ch02:48289282..48290199+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010879g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|823; (*GB) gi|225438855|ref|XP_002278713.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g24010 [Vitis vinifera];; (*SWP) sp|Q9FLW0|Y5241_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1;; (*TAIR) AT5G24010.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:8113910-8116384 FORWARD LENGTH=824;; (*ITAG) Solyc03g044160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:12247749-12250202 transcript_region:SL2.40ch03:12247749..12250202+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00010879g0019.1 protein AED:0.18 eAED:0.18 QI:377|1|1|1|0.54|0.66|12|464|333; (*GB) gi|45238339|emb|CAD27342.1| (e_value=0.0) protein kinase CK2 alpha chain [Nicotiana tabacum];; (*SWP) sp|Q08467|CSK21_ARATH (e_value=0.0) Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3;; (*TAIR) AT5G67380.1 (e_value=0.0) | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | chr5:26881156-26883383 REVERSE LENGTH=409;; (*ITAG) Solyc03g044140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12161164-12172292 transcript_region:SL2.40ch03:12161164..12172292+ go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- Q8VXT1_BETVU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010879g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|225438928|ref|XP_002284084.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100244040 [Vitis vinifera]; NbS00010879g0006.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|296087391|emb|CBI33765.3| (e_value=3e-20) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g044180.1.1 (e_value=9e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:12381498-12381764 transcript_region:SL2.40ch03:12381498..12381764+ functional_description:"ABC transporter family protein (AHRD V1 ***- B9IHA0_POPTR)"; NbS00010879g0024.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0.5|0.33|3|0|682; (*GB) gi|148299083|gb|ABQ58079.1| (e_value=0.0) subtilisin-like protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc03g044150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12190436-12193226 transcript_region:SL2.40ch03:12190436..12193226- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00021872g0002.1 protein AED:0.18 eAED:0.18 QI:176|0.88|0.9|1|0.88|0.8|10|0|560; (*GB) gi|1771381|emb|CAA65127.1| (e_value=0.0) phosphoinositide-specific phospholipase C [Nicotiana rustica];; (*SWP) sp|Q8GV43|PLCD6_ARATH (e_value=0.0) Phosphoinositide phospholipase C 6 OS=Arabidopsis thaliana GN=PLC6 PE=2 SV=2;; (*TAIR) AT2G40116.1 (e_value=0.0) | Symbols: | Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613;; (*ITAG) Solyc06g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1174772-1180699 transcript_region:SL2.40ch06:1174772..1180699+ go_terms:GO:0023034,GO:0006629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region "; GO:0023034,GO:0006629 NbS00021872g0008.1 protein AED:0.33 eAED:0.33 QI:685|0.81|0.83|1|0.81|0.83|12|0|522; (*GB) gi|255569351|ref|XP_002525643.1| (e_value=9e-116) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G58720.1 (e_value=4e-95) | Symbols: | smr (Small MutS Related) domain-containing protein | chr5:23719976-23722974 REVERSE LENGTH=519;; (*ITAG) Solyc06g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1157531-1164321 transcript_region:SL2.40ch06:1157531..1164321+ go_terms:GO:0005524,GO:0003684 functional_description:"Smr domain protein (AHRD V1 *--- B0XRA1_ASPFC); contains Interpro domain(s) IPR013899 Region of unknown function DUF1771 "; GO:0005524,GO:0003684 NbS00015620g0005.1 protein AED:0.02 eAED:0.02 QI:203|1|1|1|0.6|0.5|6|410|276; (*GB) gi|225426874|ref|XP_002283557.1| (e_value=5e-158) PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera];; (*SWP) sp|Q54KJ8|T2EB_DICDI (e_value=8e-18) General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1;; (*TAIR) AT4G20330.1 (e_value=2e-117) | Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:10982683-10984039 REVERSE LENGTH=286;; (*ITAG) Solyc06g064890.2.1 (e_value=1e-153) genomic_reference:SL2.40ch06 gene_region:36836320-36839870 transcript_region:SL2.40ch06:36836320..36839870- functional_description:"Transcription initiation factor IIE subunit beta (AHRD V1 ***- B6JXL9_SCHJY); contains Interpro domain(s) IPR017935 Transcription factor TFIIE beta subunit-like, DNA-binding "; NbS00015620g0019.1 protein AED:0.12 eAED:0.12 QI:399|1|1|1|0.75|0.8|5|420|354; (*GB) gi|224145116|ref|XP_002325532.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=2e-168) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT4G09900.1 (e_value=4e-176) | Symbols: ATMES12, MES12 | methyl esterase 12 | chr4:6221767-6223924 REVERSE LENGTH=349;; (*ITAG) Solyc06g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36827493-36832143 transcript_region:SL2.40ch06:36827493..36832143+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LXY6_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00015620g0003.1 protein AED:0.41 eAED:0.45 QI:0|0|0|1|1|1|2|0|319; (*GB) gi|193527448|gb|ACF19789.1| (e_value=7e-14) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc06g063380.1.1 (e_value=5e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36442937-36444430 transcript_region:SL2.40ch06:36442937..36444430- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HYC2_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00015620g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.6|0.33|1|1|1|6|0|357; (*GB) gi|115466988|ref|NP_001057093.1| (e_value=7e-48) Os06g0206000 [Oryza sativa Japonica Group];; (*SWP) sp|Q6IR61|NIT2A_XENLA (e_value=6e-42) Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1;; (*TAIR) AT5G12040.1 (e_value=6e-47) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc06g064880.2.1 (e_value=4e-70) genomic_reference:SL2.40ch06 gene_region:36832717-36835834 transcript_region:SL2.40ch06:36832717..36835834+ go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00015620g0022.1 protein AED:0.16 eAED:0.19 QI:174|0.81|0.66|1|0.72|0.66|12|0|1175; (*GB) gi|225460372|ref|XP_002264425.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252816 [Vitis vinifera];; (*TAIR) AT1G22930.1 (e_value=0.0) | Symbols: | T-complex protein 11 | chr1:8117521-8121854 FORWARD LENGTH=1131;; (*ITAG) Solyc06g064910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36856870-36869076 transcript_region:SL2.40ch06:36856870..36869076- functional_description:"T-complex protein 11 (AHRD V1 ***- D7KML1_ARALY); contains Interpro domain(s) IPR008862 T-complex 11 "; NbS00004437g0004.1 protein AED:0.19 eAED:0.19 QI:303|1|1|1|0.8|0.66|6|349|322; (*GB) gi|225423991|ref|XP_002282696.1| (e_value=1e-129) PREDICTED: IST1 homolog [Vitis vinifera];; (*SWP) sp|Q3ZBV1|IST1_BOVIN (e_value=1e-30) IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1;; (*TAIR) AT1G25420.1 (e_value=4e-111) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:8916141-8917980 FORWARD LENGTH=323;; (*ITAG) Solyc04g007230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:925300-931499 transcript_region:SL2.40ch04:925300..931499- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00044059g0013.1 protein AED:0.34 eAED:0.37 QI:0|0.2|0.16|0.83|0.6|0.66|6|377|327; (*GB) gi|225435836|ref|XP_002283799.1| (e_value=9e-166) PREDICTED: transcription factor Pur-alpha 1-like [Vitis vinifera];; (*SWP) sp|Q9SKZ1|PUR_ARATH (e_value=8e-145) Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1 PE=1 SV=2;; (*TAIR) AT2G32080.1 (e_value=6e-146) | Symbols: PUR ALPHA-1 | purin-rich alpha 1 | chr2:13642716-13644036 REVERSE LENGTH=296;; (*ITAG) Solyc01g049680.2.1 (e_value=2e-113) genomic_reference:SL2.40ch01 gene_region:40894134-40895807 transcript_region:SL2.40ch01:40894134..40895807- go_terms:GO:0003676 functional_description:"Transcriptional activator protein Pur-alpha (AHRD V1 *-*- C1BSV9_9MAXI); contains Interpro domain(s) IPR006628 PUR-alpha/beta/gamma, DNA/RNA-binding "; GO:0003676 NbS00044059g0001.1 protein AED:0.37 eAED:0.39 QI:0|0.75|0.8|1|0.75|0.6|5|490|209; (*GB) gi|356545873|ref|XP_003541358.1| (e_value=9e-85) PREDICTED: bifunctional protein FolD-like [Glycine max];; (*SWP) sp|Q27772|C1TC_SPOFR (e_value=8e-50) C-1-tetrahydrofolate synthase, cytoplasmic OS=Spodoptera frugiperda PE=2 SV=3;; (*TAIR) AT2G38660.3 (e_value=9e-82) | Symbols: | Amino acid dehydrogenase family protein | chr2:16166392-16168194 FORWARD LENGTH=352;; (*ITAG) Solyc01g094280.2.1 (e_value=3e-80) genomic_reference:SL2.40ch01 gene_region:77576917-77580139 transcript_region:SL2.40ch01:77576917..77580139- go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00044059g0002.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|225439037|ref|XP_002264477.1| (e_value=7e-37) PREDICTED: bifunctional protein FolD-like [Vitis vinifera];; (*SWP) sp|Q7M8X1|FOLD_WOLSU (e_value=4e-24) Bifunctional protein FolD OS=Wolinella succinogenes GN=folD PE=3 SV=1;; (*TAIR) AT2G38660.4 (e_value=5e-32) | Symbols: | Amino acid dehydrogenase family protein | chr2:16166392-16168282 FORWARD LENGTH=332;; (*ITAG) Solyc01g094280.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:77576917-77580139 transcript_region:SL2.40ch01:77576917..77580139- go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00044059g0008.1 protein AED:0.72 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|63 NbS00013716g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|57012880|sp|Q9SXS8.1|ERF3_TOBAC (e_value=2e-76) RecName: Full=Ethylene-responsive transcription factor 3; AltName: Full=Ethylene-responsive element-binding factor 3 homolog; AltName: Full=Ethylene-responsive element-binding factor 5; Short=EREBP-5; AltName: Full=NtERF5;; (*SWP) sp|Q9SXS8|ERF3_TOBAC (e_value=6e-78) Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1;; (*TAIR) AT1G50640.1 (e_value=1e-22) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc07g064890.1.1 (e_value=2e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64094550-64095272 transcript_region:SL2.40ch07:64094550..64095272+ go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene responsive transcription factor 3a (AHRD V1 **** C0J9I5_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003700 NbS00013716g0003.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|4|0|207; (*GB) gi|90111009|sp|Q3C1G9.1|RPOC2_NICSY (e_value=1e-86) RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; (*SWP) sp|P38550|RPOC2_TOBAC (e_value=3e-88) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2;; (*ITAG) ATCG00170.1 (e_value=2e-83) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc01g017350.1.1 (e_value=2e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23939347-23939876 transcript_region:SL2.40ch01:23939347..23939876- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW65_CORFO)"; NbS00060492g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|74; (*ITAG) Solyc09g010980.1.1 (e_value=7e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4333240-4333467 transcript_region:SL2.40ch09:4333240..4333467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004535g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.6|1|1|1|5|0|320; (*GB) gi|4589880|dbj|BAA76903.1| (e_value=0.0) homeobox 9 [Nicotiana tabacum];; (*SWP) sp|P46640|KNAT2_ARATH (e_value=7e-84) Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2 PE=1 SV=3;; (*TAIR) AT1G70510.1 (e_value=5e-85) | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis thaliana 2 | chr1:26576635-26582145 FORWARD LENGTH=310;; (*ITAG) Solyc05g005090.2.1 (e_value=4e-78) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00004535g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.5|1|0.6|0.33|6|0|664; (*GB) gi|297733755|emb|CBI15002.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1;; (*TAIR) AT5G40380.1 (e_value=0.0) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc03g112730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57124382-57127098 transcript_region:SL2.40ch03:57124382..57127098- go_terms:GO:0004702,GO:0019199 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702,GO:0019199 NbS00008344g0002.1 protein AED:0.07 eAED:0.07 QI:88|1|1|1|0.33|0.25|4|228|508; (*GB) gi|584864|sp|P37121.1|C76A1_SOLME (e_value=0.0) RecName: Full=Cytochrome P450 76A1; AltName: Full=CYPLXXVIA1; AltName: Full=Cytochrome P-450EG8;; (*SWP) sp|P37121|C76A1_SOLME (e_value=0.0) Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=1e-132) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc10g083700.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:62792950-62794747 transcript_region:SL2.40ch10:62792950..62794747- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00037048g0013.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|1|1|3|0|102; (*GB) gi|32454712|gb|AAP83137.1| (e_value=3e-17) lipoxygenase, partial [Nicotiana attenuata];; (*SWP) sp|O24370|LOX21_SOLTU (e_value=8e-14) Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1;; (*ITAG) Solyc12g011040.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3894074-3904280 transcript_region:SL2.40ch12:3894074..3904280- go_terms:GO:0046872,GO:0006096,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- O24370_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0046872,GO:0006096,GO:0055114 NbS00037048g0004.1 protein AED:0.10 eAED:0.32 QI:0|0|0|1|1|1|2|0|69; (*ITAG) Solyc00g138060.2.1 (e_value=3e-14) genomic_reference:SL2.40ch00 gene_region:17025800-17027795 transcript_region:SL2.40ch00:17025800..17027795+ go_terms:GO:0010302 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **** B9GL08_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302 NbS00037048g0011.1 protein AED:0.37 eAED:0.74 QI:0|0|0|0.66|0|0.33|3|0|164 NbS00037048g0012.1 protein AED:0.96 eAED:0.96 QI:0|0|0|0.5|0|0.5|2|0|152 NbS00037048g0014.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|4|0|303; (*GB) gi|32454712|gb|AAP83137.1| (e_value=3e-133) lipoxygenase, partial [Nicotiana attenuata];; (*SWP) sp|O24370|LOX21_SOLTU (e_value=2e-122) Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1;; (*TAIR) AT3G45140.1 (e_value=3e-103) | Symbols: LOX2, ATLOX2 | lipoxygenase 2 | chr3:16525437-16529233 FORWARD LENGTH=896;; (*ITAG) Solyc01g006540.2.1 (e_value=3e-123) genomic_reference:SL2.40ch01 gene_region:1113718-1123928 transcript_region:SL2.40ch01:1113718..1123928+ go_terms:GO:0005515,GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q96573_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0005515,GO:0016165 NbS00036784g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|225447061|ref|XP_002269660.1| (e_value=3e-133) PREDICTED: mitogen-activated protein kinase kinase kinase A [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=3e-54) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=2e-107) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57792333-57793301 transcript_region:SL2.40ch07:57792333..57793301+ go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00000183g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|356566660|ref|XP_003551548.1| (e_value=6e-62) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max];; (*SWP) sp|Q9SD62|Y3471_ARATH (e_value=3e-43) Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1;; (*TAIR) AT3G47110.1 (e_value=3e-44) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17347103-17350296 REVERSE LENGTH=1025;; (*ITAG) Solyc07g018190.2.1 (e_value=8e-104) genomic_reference:SL2.40ch07 gene_region:9675923-9679700 transcript_region:SL2.40ch07:9675923..9679700- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00000183g0014.1 protein AED:0.25 eAED:0.25 QI:0|1|0.33|1|1|1|3|0|260; (*GB) gi|363814543|ref|NP_001242704.1| (e_value=6e-129) uncharacterized protein LOC100813771 [Glycine max];; (*SWP) sp|Q9LXX5|PPD6_ARATH (e_value=1e-125) PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1;; (*TAIR) AT3G56650.1 (e_value=8e-127) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262;; (*ITAG) Solyc06g065490.2.1 (e_value=2e-151) genomic_reference:SL2.40ch06 gene_region:37270445-37273099 transcript_region:SL2.40ch06:37270445..37273099- go_terms:GO:0019898 functional_description:"PsbP domain-containing protein 6, chloroplastic (AHRD V1 ***- PPD6_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00000183g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|389; (*GB) gi|224138404|ref|XP_002326594.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPH0|FB57_ARATH (e_value=2e-12) Putative F-box protein At1g53550 OS=Arabidopsis thaliana GN=At1g53550 PE=4 SV=2;; (*TAIR) AT1G53550.1 (e_value=2e-13) | Symbols: | F-box family protein | chr1:19983411-19984637 FORWARD LENGTH=408;; (*ITAG) Solyc11g013890.1.1 (e_value=2e-99) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:7311684-7312835 transcript_region:SL2.40ch11:7311684..7312835+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00000183g0012.1 protein AED:0.13 eAED:0.15 QI:10|0.87|0.77|1|0.87|0.77|9|0|696; (*GB) gi|378747581|gb|AFC36404.1| (e_value=0.0) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000183g0015.1 protein AED:0.04 eAED:0.11 QI:37|0|0|1|0|0|2|0|127; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-38) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=3e-22) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00020305g0009.1 protein AED:0.30 eAED:0.30 QI:131|1|0.9|1|0.55|0.8|10|337|242; (*GB) gi|225425366|ref|XP_002270179.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100248973 [Vitis vinifera];; (*TAIR) AT1G24265.2 (e_value=3e-39) | Symbols: | Protein of unknown function (DUF1664) | chr1:8600613-8603630 FORWARD LENGTH=348;; (*ITAG) Solyc05g015820.2.1 (e_value=1e-121) genomic_reference:SL2.40ch05 gene_region:12223810-12237766 transcript_region:SL2.40ch05:12223810..12237766+ functional_description:"BZIP transcription factor bZIP55 (Fragment) (AHRD V1 *-*- Q0GPJ6_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00020305g0102.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|236 NbS00008284g0001.1 protein AED:0.23 eAED:0.35 QI:0|0|0|1|1|1|4|0|187; (*GB) gi|224122018|ref|XP_002330710.1| (e_value=3e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g069980.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00017756g0003.1 protein AED:0.10 eAED:0.10 QI:142|1|1|1|1|1|2|417|284; (*GB) gi|330368849|gb|AEC11889.1| (e_value=9e-150) MYB transcription factor ODO1 [Petunia axillaris];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=1e-150) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT4G22680.1 (e_value=6e-92) | Symbols: MYB85, AtMYB85 | myb domain protein 85 | chr4:11922789-11924080 REVERSE LENGTH=266;; (*ITAG) Solyc08g079270.2.1 (e_value=1e-144) genomic_reference:SL2.40ch08 gene_region:60045419-60047650 transcript_region:SL2.40ch08:60045419..60047650+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q6R075_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00033543g0003.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.6|1|1|5|0|102 NbS00005870g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|225428149|ref|XP_002278617.1| (e_value=1e-49) PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=3e-20) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=2e-21) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112100.2.1 (e_value=1e-61) genomic_reference:SL2.40ch01 gene_region:89962554-89964946 transcript_region:SL2.40ch01:89962554..89964946- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00005870g0002.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|255572694|ref|XP_002527280.1| (e_value=3e-62) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=2e-23) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=2e-24) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112100.2.1 (e_value=5e-64) genomic_reference:SL2.40ch01 gene_region:89962554-89964946 transcript_region:SL2.40ch01:89962554..89964946- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00055508g0002.1 protein AED:0.24 eAED:0.24 QI:1141|0.66|0.5|0.75|0.66|0.5|4|0|773; (*GB) gi|359484864|ref|XP_002273966.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g071680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56257679-56260595 transcript_region:SL2.40ch04:56257679..56260595- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00018840g0008.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.28|1|0.33|0.28|7|0|516; (*GB) gi|225446759|ref|XP_002282932.1| (e_value=0.0) PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=0.0) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G59030.1 (e_value=0.0) | Symbols: TT12, ATTT12 | MATE efflux family protein | chr3:21819124-21821288 FORWARD LENGTH=507;; (*ITAG) Solyc12g006360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:879277-882335 transcript_region:SL2.40ch12:879277..882335+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00018840g0009.1 protein AED:0.21 eAED:0.22 QI:566|0.61|0.71|1|0.53|0.64|14|208|442; (*GB) gi|15224204|ref|NP_181830.1| (e_value=0.0) putative polyamine oxidase 2 [Arabidopsis thaliana];; (*SWP) sp|Q9SKX5|PAO2_ARATH (e_value=0.0) Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1;; (*TAIR) AT2G43020.1 (e_value=0.0) | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 | chr2:17891945-17894440 FORWARD LENGTH=490;; (*ITAG) Solyc12g006370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:882961-887464 transcript_region:SL2.40ch12:882961..887464- go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00016235g0006.1 protein AED:0.14 eAED:0.14 QI:241|0.6|0.33|0.83|0.8|0.83|6|0|341; (*GB) gi|255562324|ref|XP_002522169.1| (e_value=7e-130) RING finger protein 113A, putative [Ricinus communis];; (*SWP) sp|Q8GX84|C3H1_ARATH (e_value=8e-123) Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2;; (*TAIR) AT1G01350.1 (e_value=6e-124) | Symbols: | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr1:136732-137970 FORWARD LENGTH=343;; (*ITAG) Solyc02g082110.2.1 (e_value=2e-89) genomic_reference:SL2.40ch02 gene_region:40406122-40408880 transcript_region:SL2.40ch02:40406122..40408880- go_terms:GO:0008270 functional_description:"Pre-mRNA-splicing factor cwc24 (AHRD V1 **-- B2WLF6_PYRTR); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00016235g0002.1 protein AED:0.26 eAED:0.26 QI:303|0.8|0.66|1|0.8|0.33|6|1851|376; (*ITAG) Solyc02g082100.2.1 (e_value=1e-102) genomic_reference:SL2.40ch02 gene_region:40398498-40404153 transcript_region:SL2.40ch02:40398498..40404153+ go_terms:GO:0008270 functional_description:"Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00016235g0009.1 protein AED:0.80 eAED:1.00 QI:0|0|0|1|1|1|2|0|72 NbS00023753g0004.1 protein AED:0.24 eAED:0.24 QI:388|0.9|0.90|1|0.8|0.81|11|250|435; (*GB) gi|47078321|gb|AAT09809.1| (e_value=0.0) tocopherol cyclase [Solanum tuberosum];; (*SWP) sp|Q94FY7|TOCC_ARATH (e_value=0.0) Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1;; (*TAIR) AT4G32770.1 (e_value=0.0) | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) | chr4:15804981-15807790 FORWARD LENGTH=488;; (*ITAG) Solyc08g068570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54916147-54923788 transcript_region:SL2.40ch08:54916147..54923788+ go_terms:GO:0009976 functional_description:"Tocopherol cyclase (AHRD V1 **** Q6E6T1_SOLTU)"; GO:0009976 NbS00023753g0103.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|243 NbS00023753g0109.1 protein AED:0.13 eAED:0.13 QI:271|1|1|1|1|1|7|326|511 NbS00023753g0110.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.5|0.75|0.33|0.5|4|260|96 NbS00023753g0113.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|0|0|3|0|133 NbS00058861g0008.1 protein AED:0.26 eAED:0.26 QI:364|1|0.75|1|1|1|4|0|376; (*GB) gi|225428926|ref|XP_002262649.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 63-like [Vitis vinifera];; (*SWP) sp|O81760|P2C63_ARATH (e_value=0.0) Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1;; (*TAIR) AT4G33920.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:16260876-16262703 FORWARD LENGTH=380;; (*ITAG) Solyc10g049630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41774876-41777511 transcript_region:SL2.40ch10:41774876..41777511- go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00058861g0006.1 protein AED:0.28 eAED:0.32 QI:0|0|0|1|1|1|3|0|600; (*GB) gi|356540307|ref|XP_003538631.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like [Glycine max];; (*SWP) sp|Q9LYZ9|PP362_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1;; (*TAIR) AT5G02860.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:654102-656561 FORWARD LENGTH=819;; (*ITAG) Solyc01g107320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86653841-86656492 transcript_region:SL2.40ch01:86653841..86656492- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058861g0007.1 protein AED:0.37 eAED:0.37 QI:0|1|0.5|1|1|1|2|0|147; (*GB) gi|225429337|ref|XP_002272147.1| (e_value=4e-57) PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera];; (*TAIR) AT2G14880.1 (e_value=4e-47) | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:6393686-6394841 REVERSE LENGTH=141;; (*ITAG) Solyc01g107330.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:86657058-86659620 transcript_region:SL2.40ch01:86657058..86659620- functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- D6VG39_9BURK); contains Interpro domain(s) IPR019835 SWIB domain "; NbC24582711g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|359474506|ref|XP_002279753.2| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100267731 [Vitis vinifera];; (*SWP) sp|Q9GQN5|ATRX_DROME (e_value=2e-13) Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2;; (*TAIR) AT1G05490.1 (e_value=5e-37) | Symbols: chr31 | chromatin remodeling 31 | chr1:1618795-1623195 REVERSE LENGTH=1410;; (*ITAG) Solyc01g068320.1.1 (e_value=2e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:69923212-69926294 transcript_region:SL2.40ch01:69923212..69926294- go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 **-- Q2ULH2_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005524 NbS00054657g0002.1 protein AED:0.30 eAED:0.34 QI:0|0|0|1|1|1|2|0|253; (*GB) gi|255764587|gb|ACU33853.1| (e_value=5e-113) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9CAM8|PP100_ARATH (e_value=1e-55) Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1;; (*TAIR) AT1G63150.1 (e_value=9e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23419399-23421288 FORWARD LENGTH=629;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00032374g0011.1 protein AED:0.16 eAED:0.16 QI:176|1|1|1|0.5|1|3|518|140; (*GB) gi|356505124|ref|XP_003521342.1| (e_value=1e-47) PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Glycine max];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=2e-16) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G37510.1 (e_value=2e-40) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15743112-15744504 REVERSE LENGTH=142;; (*ITAG) Solyc10g084630.1.1 (e_value=3e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63403554-63405919 transcript_region:SL2.40ch10:63403554..63405919- go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 ***- B6TNV4_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00032374g0010.1 protein AED:0.16 eAED:0.17 QI:415|0.78|0.75|0.95|0.73|0.75|20|0|898; (*GB) gi|225439735|ref|XP_002273013.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246491 [Vitis vinifera];; (*TAIR) AT2G37520.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15745033-15749615 REVERSE LENGTH=829;; (*ITAG) Solyc10g084650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63409506-63422148 transcript_region:SL2.40ch10:63409506..63422148- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7LJU5_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00032374g0006.1 protein AED:0.26 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|230; (*GB) gi|225439882|ref|XP_002278904.1| (e_value=1e-45) PREDICTED: uncharacterized protein LOC100253357 [Vitis vinifera];; (*TAIR) AT3G53630.1 (e_value=4e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19883986-19885568 FORWARD LENGTH=194;; (*ITAG) Solyc10g084620.1.1 (e_value=1e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63400608-63402843 transcript_region:SL2.40ch10:63400608..63402843+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017597g0021.1 protein AED:0.00 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|177; (*GB) gi|225461044|ref|XP_002281441.1| (e_value=3e-77) PREDICTED: protein LHCP TRANSLOCATION DEFECT [Vitis vinifera];; (*SWP) sp|Q8VY88|LTD_ARATH (e_value=6e-72) Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1;; (*TAIR) AT1G50900.1 (e_value=4e-73) | Symbols: GDC1 | Ankyrin repeat family protein | chr1:18866272-18867014 FORWARD LENGTH=175;; (*ITAG) Solyc10g006370.2.1 (e_value=7e-105) genomic_reference:SL2.40ch10 gene_region:993392-996694 transcript_region:SL2.40ch10:993392..996694+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00V79_OSTTA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00017597g0025.1 protein AED:0.14 eAED:0.14 QI:0|0.16|0.28|0.71|0.5|0.28|7|0|355; (*GB) gi|297830742|ref|XP_002883253.1| (e_value=1e-141) kinase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=8e-121) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=4e-143) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc10g006340.2.1 (e_value=2e-174) genomic_reference:SL2.40ch10 gene_region:972310-974968 transcript_region:SL2.40ch10:972310..974968+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00017597g0004.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|225461040|ref|XP_002278776.1| (e_value=4e-37) PREDICTED: uncharacterized protein LOC100243568 [Vitis vinifera];; (*TAIR) AT5G54850.1 (e_value=1e-16) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22280755-22281363 REVERSE LENGTH=202;; (*ITAG) Solyc10g006360.1.1 (e_value=4e-74) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:989509-990009 transcript_region:SL2.40ch10:989509..990009+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017597g0027.1 protein AED:0.20 eAED:0.50 QI:19|0|0|1|0.5|0.4|5|0|121; (*GB) gi|224117478|ref|XP_002317584.1| (e_value=4e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g064290.2.1 (e_value=7e-20) genomic_reference:SL2.40ch07 gene_region:63720022-63724236 transcript_region:SL2.40ch07:63720022..63724236- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-21 (AHRD V1 *-*- C1BQH4_9MAXI); contains Interpro domain(s) IPR013684 Miro-like "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00017597g0005.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|224078648|ref|XP_002305590.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g080360.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39182058-39182462 transcript_region:SL2.40ch02:39182058..39182462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017597g0023.1 protein AED:0.17 eAED:0.21 QI:0|0.42|0.12|1|0.71|0.62|8|0|602; (*GB) gi|28200788|emb|CAD45375.1| (e_value=0.0) potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=3e-120) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT4G27060.1 (e_value=3e-121) | Symbols: TOR1, SPR2, CN | ARM repeat superfamily protein | chr4:13581581-13585070 REVERSE LENGTH=864;; (*ITAG) Solyc10g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:974968-983342 transcript_region:SL2.40ch10:974968..983342- go_terms:GO:0008017 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--* B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00017597g0007.1 protein AED:0.22 eAED:0.22 QI:667|0.83|0.71|1|0.33|0.42|7|425|164; (*ITAG) Solyc10g006390.2.1 (e_value=7e-36) genomic_reference:SL2.40ch10 gene_region:1003495-1011281 transcript_region:SL2.40ch10:1003495..1011281- functional_description:"Smad nuclear interacting protein 1 (AHRD V1 *--- B1ASC5_MOUSE); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00012250g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|100; (*GB) gi|81301601|ref|YP_398897.1| (e_value=3e-47) ribosomal protein S11 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BZ9|RR11_NICTO (e_value=9e-49) 30S ribosomal protein S11, chloroplastic OS=Nicotiana tomentosiformis GN=rps11 PE=3 SV=1;; (*ITAG) ATCG00750.1 (e_value=6e-44) | Symbols: RPS11 | ribosomal protein S11 | chrC:78960-79376 REVERSE LENGTH=138;; (*ITAG) Solyc01g007570.2.1 (e_value=5e-41) genomic_reference:SL2.40ch01 gene_region:1875699-1877380 transcript_region:SL2.40ch01:1875699..1877380- go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 chloroplastic (AHRD V1 ***- D3WCH5_NEROL); contains Interpro domain(s) IPR019981 Ribosomal protein S11, bacterial-type "; GO:0005840 NbS00012250g0004.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|225242|prf||1211235CA (e_value=1e-31) ORF 1708;; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=5e-33) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-26) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=1e-33) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00034288g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|860; (*GB) gi|359477216|ref|XP_002272797.2| (e_value=0.0) PREDICTED: receptor-like protein kinase ANXUR1-like [Vitis vinifera];; (*SWP) sp|Q9SR05|ANX1_ARATH (e_value=0.0) Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1;; (*TAIR) AT3G04690.1 (e_value=0.0) | Symbols: ANX1 | Malectin/receptor-like protein kinase family protein | chr3:1273386-1275938 REVERSE LENGTH=850;; (*ITAG) Solyc07g008400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3197916-3200480 transcript_region:SL2.40ch07:3197916..3200480- go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00034288g0001.1 protein AED:0.03 eAED:0.03 QI:149|0|0.5|1|0|0.5|2|81|150; (*GB) gi|356564636|ref|XP_003550557.1| (e_value=2e-49) PREDICTED: disease resistance response protein 206-like [Glycine max];; (*TAIR) AT1G22900.1 (e_value=3e-24) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:8103910-8104491 REVERSE LENGTH=193;; (*ITAG) Solyc01g059900.2.1 (e_value=1e-65) genomic_reference:SL2.40ch01 gene_region:62040825-62041421 transcript_region:SL2.40ch01:62040825..62041421+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YR04_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00009429g0009.1 protein AED:0.30 eAED:0.32 QI:0|1|0.5|1|1|1|4|0|274; (*GB) gi|224053623|ref|XP_002297902.1| (e_value=3e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|B0CAZ0|DNAJ_ACAM1 (e_value=1e-16) Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G59610.1 (e_value=2e-65) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:24013165-24014954 FORWARD LENGTH=268;; (*ITAG) Solyc09g015360.2.1 (e_value=3e-100) genomic_reference:SL2.40ch09 gene_region:8605917-8609888 transcript_region:SL2.40ch09:8605917..8609888- go_terms:GO:0006457,GO:0031072 functional_description:"Co-chaperone protein DnaJ (AHRD V1 *-*- A7I1Z6_CAMHC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00009429g0002.1 protein AED:0.02 eAED:0.02 QI:177|0.83|0.85|1|0|0.14|7|961|135; (*GB) gi|359490078|ref|XP_002264821.2| (e_value=1e-43) PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera];; (*TAIR) AT5G51220.1 (e_value=3e-44) | Symbols: | ubiquinol-cytochrome C chaperone family protein | chr5:20821405-20823125 REVERSE LENGTH=281;; (*ITAG) Solyc06g034100.2.1 (e_value=2e-54) genomic_reference:SL2.40ch06 gene_region:20347654-20362103 transcript_region:SL2.40ch06:20347654..20362103+ functional_description:"Ubiquinol-cytochrome C chaperone family protein (AHRD V1 ***- D7MQY5_ARALY); contains Interpro domain(s) IPR007129 Ubiquinol-cytochrome C chaperone "; NbS00009429g0011.1 protein AED:0.38 eAED:0.50 QI:0|0|0|1|0|0|3|0|127 NbS00009429g0010.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|4|0|113 NbS00024147g0010.1 protein AED:0.16 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|1387; (*GB) gi|225456428|ref|XP_002280614.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257713 [Vitis vinifera];; (*TAIR) AT3G48770.1 (e_value=0.0) | Symbols: | DNA binding;ATP binding | chr3:18079261-18086817 REVERSE LENGTH=1899;; (*ITAG) Solyc03g097670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00024147g0002.1 protein AED:0.41 eAED:0.45 QI:0|0|0|1|1|1|2|391|234; (*GB) gi|225456428|ref|XP_002280614.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100257713 [Vitis vinifera];; (*TAIR) AT3G48770.1 (e_value=2e-37) | Symbols: | DNA binding;ATP binding | chr3:18079261-18086817 REVERSE LENGTH=1899;; (*ITAG) Solyc03g097670.2.1 (e_value=5e-86) genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00024147g0009.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|67; (*GB) gi|297819496|ref|XP_002877631.1| (e_value=5e-19) ATP binding protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G48770.1 (e_value=3e-20) | Symbols: | DNA binding;ATP binding | chr3:18079261-18086817 REVERSE LENGTH=1899;; (*ITAG) Solyc03g097670.2.1 (e_value=7e-28) genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00024585g0001.1 protein AED:0.24 eAED:0.24 QI:286|0.93|1|1|1|1|17|360|473; (*GB) gi|255538660|ref|XP_002510395.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=0.0) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1;; (*TAIR) AT1G75220.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:28229412-28232606 REVERSE LENGTH=487;; (*ITAG) Solyc12g089180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62736297-62742836 transcript_region:SL2.40ch12:62736297..62742836- go_terms:GO:0016020,GO:0031177,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0031177,GO:0016021 NbS00024585g0012.1 protein AED:0.43 eAED:1.00 QI:0|0|0|1|0.66|0.5|4|0|299 NbS00024585g0002.1 protein AED:0.00 eAED:0.00 QI:45|0|0.5|1|0|0.5|2|118|90; (*GB) gi|225458277|ref|XP_002282461.1| (e_value=3e-36) PREDICTED: dnaJ homolog subfamily C member 2 [Vitis vinifera];; (*TAIR) AT1G75250.1 (e_value=4e-28) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc12g089170.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62729446-62729721 transcript_region:SL2.40ch12:62729446..62729721- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 ***- D7KSM0_ARALY); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00024585g0011.1 protein AED:0.42 eAED:0.86 QI:0|0|0|1|0|0|4|0|302 NbS00024585g0013.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|81; (*ITAG) Solyc01g017760.1.1 (e_value=5e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002079g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.68|0.58|1|0.75|0.82|17|0|1702; (*GB) gi|225456629|ref|XP_002266656.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera];; (*SWP) sp|Q8BL06|UBP54_MOUSE (e_value=4e-35) Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2;; (*TAIR) AT3G47890.1 (e_value=0.0) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc06g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40097356-40108564 transcript_region:SL2.40ch06:40097356..40108564+ go_terms:GO:0006511,GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q10RB2_ORYSJ); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00003099g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|207; (*GB) gi|224077856|ref|XP_002305438.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66440.1 (e_value=9e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc01g109810.2.1 (e_value=8e-97) genomic_reference:SL2.40ch01 gene_region:88429836-88430887 transcript_region:SL2.40ch01:88429836..88430887+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00039999g0014.1 protein AED:0.02 eAED:0.02 QI:384|1|1|1|0.6|0.66|6|518|472; (*GB) gi|224082234|ref|XP_002306612.1| (e_value=2e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT1G43770.2 (e_value=5e-31) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:16548509-16550257 FORWARD LENGTH=431;; (*ITAG) Solyc04g050720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:47201470-47203916 transcript_region:SL2.40ch04:47201470..47203916+ functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q53MN0_ORYSJ)"; NbS00039999g0015.1 protein AED:0.00 eAED:0.00 QI:16|1|1|1|0.25|0.4|5|147|370; (*GB) gi|255562023|ref|XP_002522020.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8LB81|GDL79_ARATH (e_value=0.0) GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1;; (*TAIR) AT5G33370.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602773-12604670 REVERSE LENGTH=366;; (*ITAG) Solyc04g050730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:47205422-47209535 transcript_region:SL2.40ch04:47205422..47209535- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbC23915109g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|0|1|0|87; (*GB) gi|224069800|ref|XP_002326417.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=8e-25) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT5G03620.1 (e_value=6e-33) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:918738-921874 FORWARD LENGTH=766;; (*ITAG) Solyc09g009750.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3234041-3240688 transcript_region:SL2.40ch09:3234041..3240688+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbC25845156g0001.1 protein AED:0.31 eAED:0.66 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|356543827|ref|XP_003540361.1| (e_value=4e-34) PREDICTED: uncharacterized protein LOC100781532 [Glycine max];; (*TAIR) AT1G50450.1 (e_value=2e-32) | Symbols: | Saccharopine dehydrogenase | chr1:18687902-18690348 REVERSE LENGTH=428;; (*ITAG) Solyc11g065240.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47693585-47702912 transcript_region:SL2.40ch11:47693585..47702912+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase family protein expressed (AHRD V1 ***- Q2QY08_ORYSJ); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00008581g0001.1 protein AED:0.21 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|193; (*GB) gi|225450193|ref|XP_002264293.1| (e_value=2e-60) PREDICTED: ras-related protein RGP1 [Vitis vinifera];; (*SWP) sp|P25766|RLGP1_ORYSJ (e_value=5e-60) Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2;; (*TAIR) AT5G47960.1 (e_value=1e-60) | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog A4C | chr5:19421533-19422473 REVERSE LENGTH=223;; (*ITAG) Solyc01g086850.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:73531859-73536531 transcript_region:SL2.40ch01:73531859..73536531- go_terms:GO:0005525 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_HUMAN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525 NbS00008581g0007.1 protein AED:0.05 eAED:0.05 QI:147|1|1|1|1|1|3|157|238; (*GB) gi|4586372|dbj|BAA74546.2| (e_value=3e-137) thaumatin-like protein SE39b [Nicotiana tabacum];; (*SWP) sp|P50699|TLPH_ARATH (e_value=7e-79) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT4G38660.1 (e_value=7e-80) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067984 REVERSE LENGTH=345;; (*ITAG) Solyc01g086840.1.1 (e_value=3e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73529363-73530802 transcript_region:SL2.40ch01:73529363..73530802+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q5DWG1_CRYJA); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00034115g0004.1 protein AED:0.19 eAED:0.20 QI:209|0.90|0.83|1|0.81|0.83|12|462|271; (*GB) gi|218744536|dbj|BAH03477.1| (e_value=5e-168) secretory carrier-associated membrane protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9C6X2|SCAM4_ARATH (e_value=3e-138) Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1;; (*TAIR) AT1G32050.1 (e_value=2e-139) | Symbols: | SCAMP family protein | chr1:11528616-11530974 FORWARD LENGTH=264;; (*ITAG) Solyc08g076210.2.1 (e_value=1e-169) genomic_reference:SL2.40ch08 gene_region:57395919-57403348 transcript_region:SL2.40ch08:57395919..57403348+ go_terms:GO:0019904 functional_description:"Secretory carrier-associated membrane protein 2 (AHRD V1 ***- B7X6S6_TOBAC); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00005474g0002.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|365 NbS00038413g0006.1 protein AED:0.42 eAED:0.45 QI:0|0.5|0|1|0|0.33|3|0|174; (*GB) gi|225430582|ref|XP_002264384.1| (e_value=6e-34) PREDICTED: cadmium-induced protein AS8 [Vitis vinifera];; (*SWP) sp|P42735|CDI8_ARATH (e_value=1e-27) Cadmium-induced protein AS8 OS=Arabidopsis thaliana GN=At4g19070 PE=2 SV=1;; (*TAIR) AT4G19070.1 (e_value=1e-28) | Symbols: | Putative membrane lipoprotein | chr4:10446770-10448079 REVERSE LENGTH=171;; (*ITAG) Solyc12g096090.1.1 (e_value=3e-80) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63495237-63498391 transcript_region:SL2.40ch12:63495237..63498391- functional_description:"Cadmium-induced protein AS8 (AHRD V1 ***- CDI8_ARATH)"; NbS00020908g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|138; (*GB) gi|296084935|emb|CBI28344.3| (e_value=7e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94EJ2|HDA8_ARATH (e_value=3e-57) Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1;; (*TAIR) AT1G08460.1 (e_value=2e-58) | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377;; (*ITAG) Solyc06g074080.2.1 (e_value=5e-65) genomic_reference:SL2.40ch06 gene_region:42180141-42183230 transcript_region:SL2.40ch06:42180141..42183230- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9HPV0_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0003714 NbS00020908g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|127; (*GB) gi|296084935|emb|CBI28344.3| (e_value=1e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94EJ2|HDA8_ARATH (e_value=7e-47) Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1;; (*TAIR) AT1G08460.1 (e_value=5e-48) | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377;; (*ITAG) Solyc06g074080.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:42180141-42183230 transcript_region:SL2.40ch06:42180141..42183230- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9HPV0_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0003714 NbS00018905g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|293|307; (*GB) gi|225456349|ref|XP_002283913.1| (e_value=7e-141) PREDICTED: uncharacterized protein At3g48680, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SMN1|GCAL2_ARATH (e_value=3e-139) Gamma carbonic anhydrase-like 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL2 PE=1 SV=1;; (*TAIR) AT3G48680.1 (e_value=2e-140) | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-like 2 | chr3:18035107-18036773 FORWARD LENGTH=256;; (*ITAG) Solyc03g019720.2.1 (e_value=3e-178) genomic_reference:SL2.40ch03 gene_region:6659041-6665466 transcript_region:SL2.40ch03:6659041..6665466+ go_terms:GO:0008415,GO:0004089 functional_description:"Carnitine operon protein caiE (AHRD V1 *--- D2T8N9_ERWP6); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00020920g0005.1 protein AED:0.34 eAED:0.34 QI:185|1|1|1|0.85|0.87|8|314|202; (*GB) gi|4096662|gb|AAD10389.1| (e_value=3e-146) Rab1-like small GTP-binding protein [Petunia x hybrida];; (*SWP) sp|Q9ZRE2|RABD1_ARATH (e_value=8e-127) Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1;; (*TAIR) AT3G11730.1 (e_value=6e-128) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205;; (*ITAG) Solyc01g103370.2.1 (e_value=1e-146) genomic_reference:SL2.40ch01 gene_region:83750652-83755639 transcript_region:SL2.40ch01:83750652..83755639+ go_terms:GO:0007264,GO:0015031,GO:0005525 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525 NbS00010327g0009.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|255567017|ref|XP_002524491.1| (e_value=4e-91) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g081330.2.1 (e_value=1e-112) genomic_reference:SL2.40ch04 gene_region:62945005-62948114 transcript_region:SL2.40ch04:62945005..62948114- functional_description:"Chromosome 11 contig 1 DNA sequence. (Fragment) (AHRD V1 *-*- Q00Z75_OSTTA)"; NbS00010327g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|286; (*GB) gi|255557419|ref|XP_002519740.1| (e_value=2e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29790.2 (e_value=7e-94) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10430025-10431161 FORWARD LENGTH=378;; (*ITAG) Solyc02g071160.2.1 (e_value=8e-118) genomic_reference:SL2.40ch02 gene_region:35231145-35234551 transcript_region:SL2.40ch02:35231145..35234551+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ)"; NbS00010327g0026.1 protein AED:0.27 eAED:0.28 QI:0|0.6|0.5|1|0.6|0.66|6|0|195; (*GB) gi|225463398|ref|XP_002273766.1| (e_value=4e-85) PREDICTED: coatomer subunit zeta-1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6Z844|COPZ2_ORYSJ (e_value=9e-80) Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1;; (*TAIR) AT3G09800.1 (e_value=5e-78) | Symbols: | SNARE-like superfamily protein | chr3:3006731-3007916 REVERSE LENGTH=179;; (*ITAG) Solyc02g071170.2.1 (e_value=7e-100) genomic_reference:SL2.40ch02 gene_region:35235726-35240040 transcript_region:SL2.40ch02:35235726..35240040+ go_terms:GO:0005515 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- Q9MAZ0_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0005515 NbS00010327g0011.1 protein AED:0.17 eAED:0.20 QI:0|0.6|0.27|1|1|1|11|0|817; (*GB) gi|224116450|ref|XP_002317304.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G29370.1 (e_value=8e-106) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc02g071180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00010327g0024.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|0.5|1|3|0|295; (*GB) gi|161334558|gb|ABX60975.1| (e_value=0.0) TPK1 [Nicotiana tabacum];; (*SWP) sp|Q9SVV6|TPK3_ARATH (e_value=2e-123) Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1;; (*TAIR) AT4G18160.1 (e_value=1e-124) | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated outward rectifying K+ channel 6 | chr4:10055696-10057546 FORWARD LENGTH=436;; (*ITAG) Solyc02g071140.2.1 (e_value=1e-180) genomic_reference:SL2.40ch02 gene_region:35206691-35213915 transcript_region:SL2.40ch02:35206691..35213915- go_terms:GO:0015271 functional_description:"Outward rectifying potassium channel (AHRD V1 **** B9I109_POPTR); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271 NbS00010327g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|118 NbS00001738g0008.1 protein AED:0.10 eAED:0.13 QI:0|0.66|0.42|0.85|0.5|0.42|7|0|1237; (*GB) gi|297740006|emb|CBI30188.3| (e_value=6e-164) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g008530.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:2020056-2027165 transcript_region:SL2.40ch09:2020056..2027165- functional_description:"RRP1 (AHRD V1 *--- B3RH41_MEDTR); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00001738g0001.1 protein AED:0.09 eAED:0.15 QI:0|0|0|1|1|1|2|0|468; (*GB) gi|225441112|ref|XP_002264940.1| (e_value=0.0) PREDICTED: probable allantoin permease-like [Vitis vinifera];; (*SWP) sp|P94575|ALLP_BACSU (e_value=2e-73) Probable allantoin permease OS=Bacillus subtilis (strain 168) GN=pucI PE=2 SV=1;; (*TAIR) AT5G03555.1 (e_value=0.0) | Symbols: | permease, cytosine/purines, uracil, thiamine, allantoin family protein | chr5:898354-900153 REVERSE LENGTH=599;; (*ITAG) Solyc09g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2036208-2039695 transcript_region:SL2.40ch09:2036208..2039695+ go_terms:GO:0016020 functional_description:"NCS1 family transporter cytosine/purines/uracil/thiamine/allantoin (AHRD V1 *--- A4RZF3_OSTLU); contains Interpro domain(s) IPR001248 Permease, cytosine/purines, uracil, thiamine, allantoin "; GO:0016020 NbS00002520g0001.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|2|0|245; (*GB) gi|147846816|emb|CAN80620.1| (e_value=2e-62) hypothetical protein VITISV_007853 [Vitis vinifera];; (*TAIR) AT5G08560.2 (e_value=3e-46) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=1e-87) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00002520g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.14|0.71|0.83|0.71|7|0|328; (*GB) gi|224082598|ref|XP_002306758.1| (e_value=4e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9UT85|YIPC_SCHPO (e_value=2e-54) Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.04c PE=2 SV=1;; (*TAIR) AT5G08560.2 (e_value=5e-117) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=6e-158) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00002520g0010.1 protein AED:0.32 eAED:0.56 QI:0|0|0|1|1|0.5|2|0|145 NbS00002520g0008.1 protein AED:0.16 eAED:0.17 QI:128|1|0.75|1|1|1|4|0|340; (*GB) gi|384038823|gb|AFH58002.1| (e_value=0.0) chloroplast PsbP2 precursor [Nicotiana benthamiana];; (*SWP) sp|P18212|PSBP2_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2;; (*TAIR) AT1G06680.1 (e_value=5e-137) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=3e-152) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00033323g0004.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|58578282|emb|CAI48077.1| (e_value=7e-20) extensin-like protein [Capsicum chinense];; (*SWP) sp|P14009|14KD_DAUCA (e_value=6e-13) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12510.1 (e_value=7e-17) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129;; (*ITAG) Solyc08g078910.1.1 (e_value=7e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:59745392-59745787 transcript_region:SL2.40ch08:59745392..59745787- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00033323g0002.1 protein AED:0.17 eAED:0.17 QI:438|1|0.88|1|0.87|0.77|9|482|302; (*GB) gi|83283987|gb|ABC01901.1| (e_value=5e-179) 3'-5'-exoribonuclease/RNA binding-like protein [Solanum tuberosum];; (*SWP) sp|Q96B26|EXOS8_HUMAN (e_value=1e-41) Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1;; (*TAIR) AT1G60080.1 (e_value=4e-131) | Symbols: | 3'-5'-exoribonuclease family protein | chr1:22152605-22154339 REVERSE LENGTH=302;; (*ITAG) Solyc06g075390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43181968-43189299 transcript_region:SL2.40ch06:43181968..43189299- go_terms:GO:0042802 functional_description:"Exosome complex exonuclease RRP43 (AHRD V1 ***- B4FDY3_MAIZE); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0042802 NbS00033323g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|224125176|ref|XP_002329912.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|P14009|14KD_DAUCA (e_value=2e-34) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G12100.1 (e_value=2e-36) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:4095246-4095845 FORWARD LENGTH=132;; (*ITAG) Solyc08g078940.1.1 (e_value=4e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59757521-59757934 transcript_region:SL2.40ch08:59757521..59757934+ go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbC26142430g0001.1 protein AED:0.00 eAED:0.00 QI:350|1|1|1|0|0.33|3|409|32 NbS00006194g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.62|0.87|0.14|0.5|8|0|211; (*GB) gi|5070138|gb|AAD39034.1|AF068722_1 (e_value=2e-131) MADS-box protein MADS3 [Nicotiana sylvestris];; (*SWP) sp|Q03489|AGL9_PETHY (e_value=8e-132) Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2;; (*TAIR) AT1G24260.1 (e_value=1e-93) | Symbols: SEP3, AGL9 | K-box region and MADS-box transcription factor family protein | chr1:8593790-8595862 REVERSE LENGTH=250;; (*ITAG) Solyc05g015750.2.1 (e_value=1e-131) genomic_reference:SL2.40ch05 gene_region:11898903-11905313 transcript_region:SL2.40ch05:11898903..11905313- go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor MADS-box 2 (AHRD V1 **** D5HSY6_9ROSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00014491g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|207; (*GB) gi|356540289|ref|XP_003538622.1| (e_value=6e-77) PREDICTED: uncharacterized protein LOC100789861 isoform 3 [Glycine max];; (*TAIR) AT4G39860.1 (e_value=5e-65) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499909-18501472 FORWARD LENGTH=299;; (*ITAG) Solyc04g055160.2.1 (e_value=6e-93) genomic_reference:SL2.40ch04 gene_region:52930068-52933201 transcript_region:SL2.40ch04:52930068..52933201+ functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbS00023149g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|678547|gb|AAA65637.1| (e_value=4e-49) peroxidase [Solanum lycopersicum];; (*SWP) sp|Q9LSY7|PER30_ARATH (e_value=1e-44) Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1;; (*TAIR) AT3G21770.1 (e_value=8e-46) | Symbols: | Peroxidase superfamily protein | chr3:7673345-7674661 FORWARD LENGTH=329;; (*ITAG) Solyc07g052540.2.1 (e_value=2e-57) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00015897g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|121; (*ITAG) Solyc05g009480.1.1 (e_value=7e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3655150-3655524 transcript_region:SL2.40ch05:3655150..3655524+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049308g0001.1 protein AED:0.02 eAED:0.07 QI:113|1|0.5|1|0|0|2|0|167; (*GB) gi|225436608|ref|XP_002279758.1| (e_value=6e-16) PREDICTED: uncharacterized protein LOC100258543 [Vitis vinifera];; (*ITAG) Solyc07g055110.2.1 (e_value=6e-57) genomic_reference:SL2.40ch07 gene_region:60564252-60565631 transcript_region:SL2.40ch07:60564252..60565631- functional_description:"Unknown Protein (AHRD V1)"; NbS00013893g0010.1 protein AED:0.28 eAED:0.34 QI:723|0.2|0.33|1|0.4|0.5|6|0|476; (*GB) gi|255551547|ref|XP_002516819.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q7XJ53|P2C35_ARATH (e_value=9e-176) Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1;; (*TAIR) AT3G06270.1 (e_value=7e-177) | Symbols: | Protein phosphatase 2C family protein | chr3:1896763-1897887 FORWARD LENGTH=348;; (*ITAG) Solyc01g080400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72157816-72163270 transcript_region:SL2.40ch01:72157816..72163270+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00029198g0001.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0.33|0.66|1|1|3|174|75 NbS00058268g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|1|1|3|0|238; (*GB) gi|225435070|ref|XP_002284400.1| (e_value=9e-76) PREDICTED: transcription factor MYB59-like [Vitis vinifera];; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=4e-67) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G46130.1 (e_value=3e-68) | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain protein 48 | chr3:16945433-16946376 FORWARD LENGTH=256;; (*ITAG) Solyc11g073120.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53297151-53298385 transcript_region:SL2.40ch11:53297151..53298385+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00046650g0012.1 protein AED:0.61 eAED:0.61 QI:21|0|0|0.5|1|0.5|2|0|34 NbS00046650g0014.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|494; (*GB) gi|350536739|ref|NP_001234774.1| (e_value=0.0) subtilisin-like protease precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-110) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=2e-121) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00046650g0001.1 protein AED:0.12 eAED:0.13 QI:1085|0|0.5|1|0|0.5|2|447|125; (*GB) gi|284055610|pdb|3I6S|A (e_value=2e-45) Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3;; (*TAIR) AT3G14240.1 (e_value=4e-14) | Symbols: | Subtilase family protein | chr3:4741637-4743964 REVERSE LENGTH=775;; (*ITAG) Solyc10g084320.1.1 (e_value=4e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00029833g0004.1 protein AED:0.10 eAED:0.10 QI:138|0.88|0.9|1|1|1|10|324|673; (*GB) gi|359482948|ref|XP_003632863.1| (e_value=0.0) PREDICTED: probable sulfate transporter 3.4-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LW86|SUT34_ARATH (e_value=0.0) Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1;; (*TAIR) AT3G15990.1 (e_value=0.0) | Symbols: SULTR3;4 | sulfate transporter 3;4 | chr3:5427081-5430679 FORWARD LENGTH=653;; (*ITAG) Solyc03g120250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62751314-62755593 transcript_region:SL2.40ch03:62751314..62755593- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00029833g0005.1 protein AED:0.44 eAED:0.53 QI:0|0.33|0|1|0|0|4|0|153; (*GB) gi|255574562|ref|XP_002528192.1| (e_value=8e-51) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q55E69|SYS1_DICDI (e_value=5e-20) Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1;; (*TAIR) AT1G79990.1 (e_value=1e-42) | Symbols: | structural molecules | chr1:30084522-30091949 FORWARD LENGTH=1135;; (*ITAG) Solyc03g120240.2.1 (e_value=2e-55) genomic_reference:SL2.40ch03 gene_region:62746908-62751403 transcript_region:SL2.40ch03:62746908..62751403+ go_terms:GO:0005515 functional_description:"SYS1 homolog (AHRD V1 ***- C1BHJ4_ONCMY); contains Interpro domain(s) IPR019185 Integral membrane protein SYS1-related "; GO:0005515 NbS00026119g0003.1 protein AED:0.25 eAED:0.25 QI:138|1|0.66|1|1|1|3|0|201; (*GB) gi|226713184|sp|A7R385.1|CSPLC_VITVI (e_value=1e-99) RecName: Full=CASP-like protein GSVIVT00013502001;; (*SWP) sp|A7R385|CSPLC_VITVI (e_value=3e-101) CASP-like protein GSVIVT00013502001 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1;; (*TAIR) AT2G35760.1 (e_value=4e-80) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201;; (*ITAG) Solyc05g054190.2.1 (e_value=2e-105) genomic_reference:SL2.40ch05 gene_region:63294453-63299184 transcript_region:SL2.40ch05:63294453..63299184+ functional_description:"UPF0497 membrane protein 12 (AHRD V1 ***- U497C_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00055681g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|0|0|2|0|161; (*GB) gi|57013927|ref|YP_173400.1| (e_value=8e-83) hypothetical protein NitaMp054 [Nicotiana tabacum];; (*ITAG) Solyc07g040970.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00002332g0006.1 protein AED:0.32 eAED:0.33 QI:0|0.25|0|1|0.25|0.4|5|0|257; (*GB) gi|255574099|ref|XP_002527965.1| (e_value=2e-78) Elongation factor 1-alpha, putative [Ricinus communis];; (*SWP) sp|A1RXW9|EF1A_THEPD (e_value=3e-28) Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1;; (*TAIR) AT5G10630.1 (e_value=2e-78) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=9e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00002332g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|4|0|142; (*GB) gi|356512557|ref|XP_003524985.1| (e_value=1e-36) PREDICTED: HBS1-like protein-like [Glycine max];; (*SWP) sp|Q2KHZ2|HBS1L_BOVIN (e_value=2e-24) HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1;; (*TAIR) AT5G10630.1 (e_value=2e-38) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00006523g0010.1 protein AED:0.19 eAED:0.19 QI:729|0.57|0.5|0.87|0.28|0.5|8|0|736; (*GB) gi|297851594|ref|XP_002893678.1| (e_value=0.0) hypothetical protein ARALYDRAFT_336243 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O64769|POT11_ARATH (e_value=1e-172) Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=1 SV=1;; (*TAIR) AT2G35060.1 (e_value=9e-174) | Symbols: KUP11 | K+ uptake permease 11 | chr2:14775184-14778184 REVERSE LENGTH=792;; (*ITAG) Solyc02g068590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33122412-33131345 transcript_region:SL2.40ch02:33122412..33131345- go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** A9STU4_PHYPA); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00053047g0008.1 protein AED:0.23 eAED:0.23 QI:132|1|1|1|0.76|0.78|14|682|363; (*GB) gi|297849098|ref|XP_002892430.1| (e_value=0.0) hypothetical protein ARALYDRAFT_888027 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G08040.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:2495507-2497973 REVERSE LENGTH=382;; (*ITAG) Solyc11g069550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51250786-51256286 transcript_region:SL2.40ch11:51250786..51256286- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00020847g0003.1 protein AED:0.08 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|300; (*GB) gi|193527442|gb|ACF19786.1| (e_value=1e-64) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc07g053680.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59444350-59444996 transcript_region:SL2.40ch07:59444350..59444996- go_terms:GO:0045449 functional_description:"NAC domain-containing protein 67 (AHRD V1 ***- B6T3X1_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00020847g0016.1 protein AED:0.44 eAED:0.44 QI:393|0.83|0.76|0.84|0.83|0.69|13|0|492; (*GB) gi|359489764|ref|XP_002272417.2| (e_value=4e-129) PREDICTED: probable isoaspartyl peptidase/L-asparaginase 4-like [Vitis vinifera];; (*SWP) sp|O65268|ASPG4_ARATH (e_value=2e-113) Probable isoaspartyl peptidase/L-asparaginase 4 OS=Arabidopsis thaliana GN=At4g00590 PE=2 SV=3;; (*TAIR) AT4G00590.1 (e_value=1e-114) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:252835-254880 FORWARD LENGTH=408;; (*ITAG) Solyc05g048770.2.1 (e_value=3e-154) genomic_reference:SL2.40ch05 gene_region:58569253-58583878 transcript_region:SL2.40ch05:58569253..58583878+ go_terms:GO:0003948,GO:0008233 functional_description:"N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 *-** ASPG_HUMAN); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948,GO:0008233 NbS00020847g0017.1 protein AED:0.12 eAED:0.13 QI:0|0.85|0.77|0.95|0.66|0.77|22|0|1222; (*GB) gi|225454115|ref|XP_002269352.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O65272|KEA2_ARATH (e_value=0.0) K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2;; (*TAIR) AT4G00630.1 (e_value=0.0) | Symbols: KEA2, ATKEA2 | K+ efflux antiporter 2 | chr4:261655-267789 REVERSE LENGTH=1174;; (*ITAG) Solyc01g094290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00011547g0006.1 protein AED:0.07 eAED:0.07 QI:621|1|1|1|1|1|5|425|330; (*GB) gi|225426649|ref|XP_002274756.1| (e_value=8e-112) PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=1e-93) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g079630.2.1 (e_value=6e-155) genomic_reference:SL2.40ch08 gene_region:60275702-60280510 transcript_region:SL2.40ch08:60275702..60280510- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00011547g0007.1 protein AED:0.40 eAED:0.40 QI:0|0.85|0.87|1|1|1|8|175|278; (*GB) gi|225470285|ref|XP_002266380.1| (e_value=3e-119) PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XJ36|CLPR2_ARATH (e_value=2e-111) ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1;; (*TAIR) AT1G12410.1 (e_value=1e-112) | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteolytic subunit 2 | chr1:4223099-4224954 FORWARD LENGTH=279;; (*ITAG) Solyc08g079620.2.1 (e_value=4e-140) genomic_reference:SL2.40ch08 gene_region:60269439-60274214 transcript_region:SL2.40ch08:60269439..60274214+ go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** A5ADV7_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00024368g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|1|0.25|0|5|0|186; (*GB) gi|225438690|ref|XP_002277554.1| (e_value=1e-73) PREDICTED: eukaryotic initiation factor 4A [Vitis vinifera];; (*TAIR) AT4G37020.1 (e_value=7e-71) | Symbols: | BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17445778-17447135 FORWARD LENGTH=212;; (*ITAG) Solyc02g090750.2.1 (e_value=3e-91) genomic_reference:SL2.40ch02 gene_region:46838035-46842708 transcript_region:SL2.40ch02:46838035..46842708- functional_description:"ATP-dependent RNA helicase fal1 (AHRD V1 ***- B2WHT2_PYRTR)"; NbS00000583g0007.1 protein AED:0.11 eAED:0.11 QI:9|0.33|0.75|0.75|1|1|4|191|532; (*GB) gi|255537555|ref|XP_002509844.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT5G41460.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524;; (*ITAG) Solyc08g081420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61656175-61659800 transcript_region:SL2.40ch08:61656175..61659800- go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00000583g0009.1 protein AED:0.32 eAED:0.35 QI:0|0|0|0.75|0|0.25|4|0|217; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=8e-35) hypothetical protein [Nicotiana tabacum]; NbS00027469g0005.1 protein AED:0.56 eAED:0.56 QI:0|0.28|0|0.37|0.85|0.87|8|0|329; (*GB) gi|183604839|gb|ACC64519.1| (e_value=1e-139) neuroblastoma-amplified gene [Nicotiana benthamiana];; (*TAIR) AT5G24350.2 (e_value=2e-67) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). | chr5:8301537-8310746 FORWARD LENGTH=2396;; (*ITAG) Solyc03g082680.2.1 (e_value=8e-116) genomic_reference:SL2.40ch03 gene_region:46122780-46137496 transcript_region:SL2.40ch03:46122780..46137496- functional_description:"Neuroblastoma-amplified protein-like protein (AHRD V1 *-*- D2V0U7_NAEGR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00011085g0008.1 protein AED:0.17 eAED:0.34 QI:0|0|0|1|0|0.16|6|0|341; (*ITAG) Solyc03g122200.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00011085g0007.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|0|0.33|3|0|115; (*ITAG) Solyc12g042670.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43454760-43456169 transcript_region:SL2.40ch12:43454760..43456169+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00011085g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0.5|1|1|1|2|0|139; (*GB) gi|118482983|gb|ABK93403.1| (e_value=6e-40) unknown [Populus trichocarpa];; (*ITAG) Solyc04g078650.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:60938439-60939862 transcript_region:SL2.40ch04:60938439..60939862- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 ***- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00019072g0006.1 protein AED:0.33 eAED:0.38 QI:40|0|0|0.5|0.4|0.5|6|0|237; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-60) hypothetical protein [Nicotiana tabacum]; NbS00019072g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.66|1|0.4|0.5|6|501|112; (*GB) gi|224101251|ref|XP_002312202.1| (e_value=4e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GY97|CSTR2_ARATH (e_value=5e-41) CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1;; (*TAIR) AT2G43240.2 (e_value=3e-42) | Symbols: | Nucleotide-sugar transporter family protein | chr2:17971280-17975300 REVERSE LENGTH=387;; (*ITAG) Solyc11g008610.1.1 (e_value=6e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2796072-2804558 transcript_region:SL2.40ch11:2796072..2804558- go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 **** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00018571g0001.1 protein AED:0.76 eAED:0.86 QI:0|0|0|0.37|1|1|8|0|334; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-19) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00018571g0002.1 protein AED:0.06 eAED:0.06 QI:174|0|0.5|1|0|0.5|2|0|581; (*GB) gi|225441016|ref|XP_002277577.1| (e_value=6e-176) PREDICTED: uncharacterized protein LOC100244314 [Vitis vinifera];; (*TAIR) AT3G23160.1 (e_value=4e-81) | Symbols: | Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531;; (*ITAG) Solyc09g008930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2312453-2314444 transcript_region:SL2.40ch09:2312453..2314444- functional_description:"Os03g0270500 protein (Fragment) (AHRD V1 *-*- Q0DT39_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00042377g0009.1 protein AED:0.14 eAED:0.16 QI:0|0.5|0.42|0.85|0.5|0.42|7|1213|760; (*GB) gi|297603504|ref|NP_001054142.2| (e_value=0.0) Os04g0660200 [Oryza sativa Japonica Group];; (*SWP) sp|Q02981|YP109_YEAST (e_value=1e-67) ABC1 family protein YPL109C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL109C PE=1 SV=2;; (*TAIR) AT1G11390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc10g006790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1231572-1237111 transcript_region:SL2.40ch10:1231572..1237111+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--- ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00042377g0008.1 protein AED:0.35 eAED:0.35 QI:215|0|0.5|0.5|0|0.5|2|0|254; (*GB) gi|359485725|ref|XP_003633323.1| (e_value=2e-90) PREDICTED: uncharacterized protein C167.05-like isoform 4 [Vitis vinifera];; (*TAIR) AT1G11360.4 (e_value=6e-83) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc10g006760.2.1 (e_value=5e-122) genomic_reference:SL2.40ch10 gene_region:1212643-1214025 transcript_region:SL2.40ch10:1212643..1214025- go_terms:GO:0006950 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00019578g0004.1 protein AED:0.19 eAED:0.19 QI:56|0.85|0.75|1|0.14|0.37|8|0|233; (*GB) gi|357503753|ref|XP_003622165.1| (e_value=1e-88) ABC transporter I family member [Medicago truncatula];; (*SWP) sp|Q8LEF6|AB11I_ARATH (e_value=8e-85) ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1;; (*TAIR) AT5G14100.1 (e_value=6e-86) | Symbols: ATNAP14, NAP14 | non-intrinsic ABC protein 14 | chr5:4549706-4551632 REVERSE LENGTH=278;; (*ITAG) Solyc02g068180.2.1 (e_value=2e-115) genomic_reference:SL2.40ch02 gene_region:32778437-32785527 transcript_region:SL2.40ch02:32778437..32785527+ go_terms:GO:0015421 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- D4QI89_ENTFC); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015421 NbC26149360g0001.1 protein AED:0.10 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|284055610|pdb|3I6S|A (e_value=2e-95) Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3;; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-38) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=1e-46) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc10g084320.1.1 (e_value=1e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00003964g0003.1 protein AED:0.06 eAED:0.06 QI:46|1|1|1|1|1|2|219|478; (*GB) gi|75331337|sp|Q8W2N5.1|DES_TOBAC (e_value=0.0) RecName: Full=9-divinyl ether synthase; Short=NtDES1; AltName: Full=Colneleate synthase; AltName: Full=Cytochrome P450 74D3;; (*SWP) sp|Q8W2N5|DES_TOBAC (e_value=0.0) 9-divinyl ether synthase OS=Nicotiana tabacum GN=DES1 PE=1 SV=1;; (*TAIR) AT5G42650.1 (e_value=1e-155) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc01g109140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87953424-87955263 transcript_region:SL2.40ch01:87953424..87955263+ go_terms:GO:0019825,GO:0009978 functional_description:"Cytochrome P450"; GO:0019825,GO:0009978 NbS00009192g0004.1 protein AED:0.19 eAED:0.19 QI:176|1|0.87|1|1|1|8|407|619; (*GB) gi|359475690|ref|XP_003631732.1| (e_value=0.0) PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|A1AK01|SYC_PELPD (e_value=9e-157) Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1;; (*TAIR) AT5G38830.1 (e_value=0.0) | Symbols: | Cysteinyl-tRNA synthetase, class Ia family protein | chr5:15545764-15548094 REVERSE LENGTH=511;; (*ITAG) Solyc05g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3328877-3333922 transcript_region:SL2.40ch05:3328877..3333922- go_terms:GO:0004817 functional_description:"Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia "; GO:0004817 NbS00022520g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|152; (*GB) gi|255555285|ref|XP_002518679.1| (e_value=5e-35) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G15270.1 (e_value=5e-30) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). | chr2:6637967-6639252 FORWARD LENGTH=194;; (*ITAG) Solyc01g107610.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:86866986-86870073 transcript_region:SL2.40ch01:86866986..86870073+ functional_description:"PRKR interacting protein 1 (AHRD V1 *-*- B6TNU4_MAIZE); contains Interpro domain(s) IPR009548 Protein of unknown function DUF1168 "; NbS00033826g0004.1 protein AED:0.32 eAED:0.32 QI:93|0.66|0.6|1|0.55|0.4|10|0|329; (*GB) gi|147774374|emb|CAN72399.1| (e_value=6e-98) hypothetical protein VITISV_041203 [Vitis vinifera];; (*TAIR) AT3G13410.1 (e_value=2e-72) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:4362149-4364032 REVERSE LENGTH=321;; (*ITAG) Solyc01g049890.2.1 (e_value=7e-126) genomic_reference:SL2.40ch01 gene_region:41867853-41870547 transcript_region:SL2.40ch01:41867853..41870547- functional_description:"Unknown Protein (AHRD V1)"; NbS00051917g0005.1 protein AED:0.34 eAED:0.34 QI:47|0.72|0.66|0.91|0.63|0.83|12|0|344; (*GB) gi|225453122|ref|XP_002272712.1| (e_value=3e-163) PREDICTED: uncharacterized protein C20orf4 homolog [Vitis vinifera];; (*SWP) sp|Q08DJ7|CT004_BOVIN (e_value=3e-36) Uncharacterized protein C20orf4 homolog OS=Bos taurus PE=2 SV=1;; (*TAIR) AT1G66510.2 (e_value=3e-141) | Symbols: | AAR2 protein family | chr1:24812881-24815804 FORWARD LENGTH=399;; (*ITAG) Solyc02g091330.2.1 (e_value=5e-152) genomic_reference:SL2.40ch02 gene_region:47231747-47240486 transcript_region:SL2.40ch02:47231747..47240486- go_terms:GO:0005515 functional_description:"C20orf4 homolog (AHRD V1 **-- C0H960_SALSA); contains Interpro domain(s) IPR007946 AAR2 "; GO:0005515 NbS00004554g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.2|0.16|1|0.2|0.16|6|0|454; (*GB) gi|350539573|ref|NP_001233940.1| (e_value=0.0) castasterone 26-hydroxylase [Solanum lycopersicum];; (*SWP) sp|O48786|C734A_ARATH (e_value=4e-161) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=3e-162) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc03g120060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62611911-62620038 transcript_region:SL2.40ch03:62611911..62620038+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00012427g0006.1 protein AED:0.17 eAED:0.20 QI:222|0.57|0.73|0.93|1|1|15|814|702; (*GB) gi|224077154|ref|XP_002305157.1| (e_value=0.0) nadph-cytochrome P450 oxydoreductase [Populus trichocarpa];; (*SWP) sp|Q6NPS8|ATR3_ARATH (e_value=0.0) NADPH-dependent diflavin oxidoreductase ATR3 OS=Arabidopsis thaliana GN=ATR3 PE=1 SV=1;; (*TAIR) AT3G02280.1 (e_value=0.0) | Symbols: | Flavodoxin family protein | chr3:453646-457659 FORWARD LENGTH=623;; (*ITAG) Solyc02g085820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43192521-43201792 transcript_region:SL2.40ch02:43192521..43201792+ go_terms:GO:0050661,GO:0050660 functional_description:"NADPH-cytochrome P450 reductase (AHRD V1 **** A9PL55_ANOFN); contains Interpro domain(s) IPR003097 FAD-binding, type 1 "; GO:0050661,GO:0050660 NbS00012427g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|491 NbS00017002g0003.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|144 NbS00045815g0003.1 protein AED:0.00 eAED:0.00 QI:58|1|1|1|0.25|0.4|5|232|292; (*GB) gi|255587064|ref|XP_002534120.1| (e_value=9e-116) ef-hand calcium binding protein, putative [Ricinus communis];; (*SWP) sp|Q8W4L0|CML49_ARATH (e_value=8e-107) Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1;; (*TAIR) AT3G10300.3 (e_value=6e-108) | Symbols: | Calcium-binding EF-hand family protein | chr3:3186436-3188071 FORWARD LENGTH=335;; (*ITAG) Solyc04g016400.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:7193372-7199049 transcript_region:SL2.40ch04:7193372..7199049- go_terms:GO:0048306 functional_description:"Calpain-2 catalytic subunit (AHRD V1 *--- CAN2_CHICK); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0048306 NbS00024779g0005.1 protein AED:0.25 eAED:0.26 QI:0|0.75|0.66|1|0.75|0.66|9|0|332; (*GB) gi|357455291|ref|XP_003597926.1| (e_value=2e-115) Formamidopyrimidine-DNA glycosylase [Medicago truncatula];; (*SWP) sp|A4J4X3|FPG_DESRM (e_value=3e-15) Formamidopyrimidine-DNA glycosylase OS=Desulfotomaculum reducens (strain MI-1) GN=mutM PE=3 SV=1;; (*TAIR) AT1G52500.2 (e_value=7e-99) | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM homolog-1 | chr1:19560043-19562855 FORWARD LENGTH=390;; (*ITAG) Solyc03g117510.2.1 (e_value=9e-128) genomic_reference:SL2.40ch03 gene_region:60702450-60707474 transcript_region:SL2.40ch03:60702450..60707474+ go_terms:GO:0019104 functional_description:"Formamidopyrimidine-DNA glycosylase (AHRD V1 **** C5JTH8_AJEDS); contains Interpro domain(s) IPR000191 DNA glycosylase/AP lyase "; GO:0019104 NbS00008222g0004.1 protein AED:0.28 eAED:0.29 QI:1348|0.71|0.6|0.93|0.64|0.53|15|313|716; (*GB) gi|359484139|ref|XP_002267403.2| (e_value=0.0) PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Vitis vinifera];; (*SWP) sp|O60177|YG42_SCHPO (e_value=4e-98) Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=2 SV=1;; (*TAIR) AT1G50410.1 (e_value=0.0) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr1:18672828-18677365 FORWARD LENGTH=981;; (*ITAG) Solyc02g050280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:25311503-25328863 transcript_region:SL2.40ch02:25311503..25328863+ go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--* CHD3_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00032880g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|132; (*GB) gi|225436198|ref|XP_002267731.1| (e_value=5e-29) PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera];; (*SWP) sp|Q7XLP4|Y4869_ORYSJ (e_value=6e-24) B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3;; (*ITAG) Solyc01g081400.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:73119945-73121166 transcript_region:SL2.40ch01:73119945..73121166+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os04g0386900 (AHRD V1 ***- Y4869_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00032880g0008.1 protein AED:0.04 eAED:0.13 QI:0|0|0|1|1|0.66|3|0|366; (*GB) gi|255587680|ref|XP_002534354.1| (e_value=9e-86) Transcription factor ICE1, putative [Ricinus communis];; (*SWP) sp|Q84TK1|BH010_ARATH (e_value=4e-57) Transcription factor bHLH10 OS=Arabidopsis thaliana GN=BHLH10 PE=2 SV=1;; (*TAIR) AT2G31220.1 (e_value=3e-58) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13303014-13304661 FORWARD LENGTH=458;; (*ITAG) Solyc01g081100.1.1 (e_value=9e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72947158-72948750 transcript_region:SL2.40ch01:72947158..72948750- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00032880g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|0|0|3|0|70; (*GB) gi|147796361|emb|CAN70389.1| (e_value=1e-16) hypothetical protein VITISV_013662 [Vitis vinifera];; (*TAIR) AT1G64850.1 (e_value=1e-15) | Symbols: | Calcium-binding EF hand family protein | chr1:24096548-24097574 REVERSE LENGTH=162;; (*ITAG) Solyc01g081190.2.1 (e_value=7e-19) genomic_reference:SL2.40ch01 gene_region:72994229-72995987 transcript_region:SL2.40ch01:72994229..72995987+ go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 **** D7KZ13_ARALY); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00058781g0003.1 protein AED:0.00 eAED:0.00 QI:1142|1|1|1|0|0.66|3|7|95 NbS00058781g0005.1 protein AED:0.34 eAED:0.64 QI:0|0|0|1|0|0|2|0|95 NbS00032575g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|297739445|emb|CBI29627.3| (e_value=5e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|P30236|HSP41_SOYBN (e_value=2e-43) 22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1;; (*TAIR) AT4G10250.1 (e_value=4e-43) | Symbols: ATHSP22.0 | HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195;; (*ITAG) Solyc03g113930.1.1 (e_value=2e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:58031590-58032156 transcript_region:SL2.40ch03:58031590..58032156+ go_terms:GO:0005515 functional_description:"class IV heat shock protein (AHRD V1 ***- B6T3F5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0005515 NbS00032575g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|91 NbS00022941g0020.1 protein AED:0.14 eAED:0.14 QI:0|0.62|0.55|1|0.75|0.77|9|0|441; (*GB) gi|297745973|emb|CBI16029.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=1e-150) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23823099 REVERSE LENGTH=489;; (*ITAG) Solyc06g076600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43965640-43970048 transcript_region:SL2.40ch06:43965640..43970048+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase 2 (AHRD V1 *-*- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00022941g0016.1 protein AED:0.24 eAED:0.24 QI:292|0.7|0.81|1|1|1|11|399|420; (*GB) gi|225434716|ref|XP_002281136.1| (e_value=0.0) PREDICTED: cytosolic enolase 3-like [Vitis vinifera];; (*SWP) sp|Q9ZW34|ENO3_ARATH (e_value=0.0) Cytosolic enolase 3 OS=Arabidopsis thaliana GN=ENO3 PE=2 SV=1;; (*TAIR) AT2G29560.1 (e_value=0.0) | Symbols: ENOC | cytosolic enolase | chr2:12646635-12649694 FORWARD LENGTH=475;; (*ITAG) Solyc06g076650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43991430-44000411 transcript_region:SL2.40ch06:43991430..44000411+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- A9P9U5_POPTR); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00022941g0017.1 protein AED:0.04 eAED:0.04 QI:337|1|0.5|1|1|1|2|0|258; (*GB) gi|118485524|gb|ABK94615.1| (e_value=1e-58) unknown [Populus trichocarpa];; (*TAIR) AT5G05830.1 (e_value=2e-48) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc06g076610.2.1 (e_value=1e-130) genomic_reference:SL2.40ch06 gene_region:43971460-43974405 transcript_region:SL2.40ch06:43971460..43974405- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *--- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00022941g0004.1 protein AED:0.05 eAED:0.05 QI:202|1|1|1|0.75|0.6|5|108|264; (*GB) gi|10946427|gb|AAG24908.1|AF305075_1 (e_value=0.0) proliferating cell nuclear antigen [Nicotiana benthamiana];; (*SWP) sp|O82797|PCNA_TOBAC (e_value=0.0) Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1;; (*TAIR) AT2G29570.1 (e_value=0.0) | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264;; (*ITAG) Solyc06g076660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44000768-44002482 transcript_region:SL2.40ch06:44000768..44002482- go_terms:GO:0032183,GO:0032405 functional_description:"Proliferating cell nuclear antigen (AHRD V1 ***- Q8H0Q1_SOLLC); contains Interpro domain(s) IPR000730 Proliferating cell nuclear antigen, PCNA "; GO:0032183,GO:0032405 NbS00022941g0023.1 protein AED:0.34 eAED:0.48 QI:0|0.25|0.2|1|0.5|0.4|5|0|232; (*GB) gi|225434724|ref|XP_002281319.1| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100255366 [Vitis vinifera];; (*TAIR) AT5G52370.1 (e_value=2e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21260558-21261203 REVERSE LENGTH=142;; (*ITAG) Solyc06g076620.2.1 (e_value=5e-73) genomic_reference:SL2.40ch06 gene_region:43975609-43979126 transcript_region:SL2.40ch06:43975609..43979126- functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 ***- Q9FHC3_ARATH)"; NbS00006073g0005.1 protein AED:0.20 eAED:0.26 QI:0|0|0|1|1|1|2|0|317; (*GB) gi|57013884|ref|YP_173358.1| (e_value=2e-141) orf297a [Nicotiana tabacum];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=2e-23) DNA polymerase OS=Zea mays PE=3 SV=1; NbS00006073g0021.1 protein AED:0.46 eAED:0.46 QI:0|0|0.5|1|0|0|2|0|88; (*GB) gi|255590603|ref|XP_002535312.1| (e_value=8e-36) 60S ribosomal protein L16, putative [Ricinus communis];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-28) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=3e-23) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc11g056400.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43126474-43127657 transcript_region:SL2.40ch11:43126474..43127657+ go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI); contains Interpro domain(s) IPR008282 Ribosomal protein S3, N-terminal "; GO:0005840 NbS00006073g0009.1 protein AED:0.80 eAED:0.84 QI:0|0|0|0.33|1|1|6|0|108; (*ITAG) Solyc11g056480.1.1 (e_value=3e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43155644-43156396 transcript_region:SL2.40ch11:43155644..43156396+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- D0GL35_9FUSO); contains Interpro domain(s) IPR002222 Ribosomal protein S19/S15 "; GO:0005840 NbS00006073g0020.1 protein AED:0.19 eAED:0.28 QI:0|0.28|0|1|0.57|0.5|8|0|784; (*GB) gi|359487645|ref|XP_002279164.2| (e_value=2e-160) PREDICTED: uncharacterized protein LOC100249393 [Vitis vinifera];; (*SWP) sp|Q3E8Z8|PME28_ARATH (e_value=1e-149) Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1;; (*TAIR) AT5G27870.1 (e_value=1e-150) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:9878991-9881806 REVERSE LENGTH=732;; (*ITAG) Solyc01g099940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81806518-81809735 transcript_region:SL2.40ch01:81806518..81809735- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RFE0_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00006073g0018.1 protein AED:0.24 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|186; (*ITAG) Solyc03g063790.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:33526476-33526877 transcript_region:SL2.40ch03:33526476..33526877- functional_description:"Unknown Protein (AHRD V1)"; NbS00006073g0022.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|0|0|3|0|218; (*GB) gi|57013937|ref|YP_173410.1| (e_value=1e-121) ribosomal protein S3 [Nicotiana tabacum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-121) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=8e-88) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=7e-109) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00006073g0024.1 protein AED:0.46 eAED:0.73 QI:0|0|0|1|0|0|2|0|89; (*GB) gi|1323710|gb|AAC00526.1| (e_value=4e-24) ribosomal protein S3, partial (mitochondrion) [Petunia sp.];; (*SWP) sp|Q04716|RT03_PETHY (e_value=2e-22) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=5e-17) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc08g045870.2.1 (e_value=9e-22) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00018307g0011.1 protein AED:0.28 eAED:0.28 QI:311|0.85|0.75|1|0.42|0.5|8|0|374; (*GB) gi|255580872|ref|XP_002531255.1| (e_value=2e-141) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|A8KBE0|OXR1_XENTR (e_value=1e-19) Oxidation resistance protein 1 OS=Xenopus tropicalis GN=oxr1 PE=2 SV=2;; (*TAIR) AT4G39870.2 (e_value=1e-114) | Symbols: | TLD-domain containing nucleolar protein | chr4:18502234-18504275 FORWARD LENGTH=394;; (*ITAG) Solyc04g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52940795-52945381 transcript_region:SL2.40ch04:52940795..52945381+ functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00018307g0014.1 protein AED:0.31 eAED:0.36 QI:0|0.62|0.58|1|0.87|0.82|17|0|682; (*GB) gi|118487206|gb|ABK95431.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q43011|ASNS_ORYSJ (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3;; (*TAIR) AT5G10240.1 (e_value=0.0) | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212934-3216418 REVERSE LENGTH=578;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00046982g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0|1|1|1|4|0|243; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=4e-117) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=2e-67) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT4G13240.1 (e_value=4e-71) | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide exchange factor 9 | chr4:7680153-7682414 FORWARD LENGTH=517;; (*ITAG) Solyc03g120650.2.1 (e_value=8e-120) genomic_reference:SL2.40ch03 gene_region:63032133-63035294 transcript_region:SL2.40ch03:63032133..63035294- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00046982g0002.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|0.66|1|1|3|0|107; (*GB) gi|397555|emb|CAA43841.1| (e_value=3e-41) photosystem I psaH protein [Nicotiana sylvestris];; (*SWP) sp|O04006|PSAH_BRARA (e_value=6e-36) Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1;; (*TAIR) AT1G52230.1 (e_value=2e-36) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=7e-43) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00005589g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.9|1|1|1|10|245|269; (*GB) gi|68299229|emb|CAJ13715.1| (e_value=1e-149) putative replication factor A [Capsicum chinense];; (*SWP) sp|P15927|RFA2_HUMAN (e_value=1e-21) Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1 SV=1;; (*TAIR) AT2G24490.2 (e_value=2e-74) | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=279;; (*ITAG) Solyc10g081830.1.1 (e_value=2e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62125511-62129586 transcript_region:SL2.40ch10:62125511..62129586+ go_terms:GO:0003676 functional_description:"Replication protein A subunit (AHRD V1 ***- B6T3L8_MAIZE); contains Interpro domain(s) IPR014646 Replication protein A, subunit RPA32 "; GO:0003676 NbS00005589g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|0.5|0.66|3|0|243; (*GB) gi|88683134|emb|CAJ77501.1| (e_value=9e-149) expp1 protein precursor [Solanum tuberosum];; (*TAIR) AT3G44150.1 (e_value=2e-124) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15887617-15888728 FORWARD LENGTH=246;; (*ITAG) Solyc10g081820.1.1 (e_value=1e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62119410-62124645 transcript_region:SL2.40ch10:62119410..62124645+ functional_description:"Expp1 protein (AHRD V1 ***- Q2HPL4_SOLTU)"; NbS00005589g0116.1 protein AED:0.01 eAED:0.01 QI:227|1|1|1|0.8|0.66|6|436|277 NbS00005589g0122.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.5|1|1|0.83|6|0|477 NbS00005589g0117.1 protein AED:0.25 eAED:0.25 QI:223|1|1|1|1|1|2|251|323 NbS00005589g0102.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|0.25|0.4|5|1579|767 NbS00049664g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.6|0.33|0.66|1|0.83|6|0|236; (*GB) gi|584795|sp|Q08436.1|PMA3_NICPL (e_value=1e-107) RecName: Full=Plasma membrane ATPase 3; AltName: Full=Proton pump 3;; (*SWP) sp|Q08436|PMA3_NICPL (e_value=4e-109) Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1;; (*TAIR) AT5G62670.1 (e_value=1e-98) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc06g071100.2.1 (e_value=2e-108) genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00051494g0004.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|186; (*GB) gi|2739279|emb|CAA11153.1| (e_value=8e-92) short chain alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=5e-46) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=4e-47) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc12g056710.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48159524-48160596 transcript_region:SL2.40ch12:48159524..48160596- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00051494g0006.1 protein AED:0.38 eAED:0.42 QI:0|1|0.5|1|0|0.5|2|0|92; (*GB) gi|531269|dbj|BAA06241.1| (e_value=2e-28) TFHP-1 protein [Nicotiana tabacum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-13) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=2e-14) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc12g056610.1.1 (e_value=9e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47942885-47943810 transcript_region:SL2.40ch12:47942885..47943810+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase (AHRD V1 **-- Q6DLW2_SOLTU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00049515g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0.5|0|3|0|845; (*GB) gi|255586113|ref|XP_002533720.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51650.1 (e_value=2e-74) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51640.1); Has 27645 Blast hits to 15097 proteins in 1246 species: Archae - 44; Bacteria - 3367; Metazoa - 10036; Fungi - 2690; Plants - 1205; Viruses - 196; Other Eukaryotes - 10107 (source: NCBI BLink). | chr3:19159449-19162267 FORWARD LENGTH=842;; (*ITAG) Solyc09g018310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14422207-14431899 transcript_region:SL2.40ch09:14422207..14431899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012536g0010.1 protein AED:0.07 eAED:0.07 QI:356|0.92|1|1|0.71|0.8|15|422|567; (*GB) gi|356523048|ref|XP_003530154.1| (e_value=0.0) PREDICTED: acyl-CoA synthetase family member 3, mitochondrial-like [Glycine max];; (*SWP) sp|Q8H151|AAE13_ARATH (e_value=0.0) Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1;; (*TAIR) AT3G16170.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:5476490-5480128 FORWARD LENGTH=544;; (*ITAG) Solyc12g044300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44635849-44639534 transcript_region:SL2.40ch12:44635849..44639534+ go_terms:GO:0016878 functional_description:"Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II (AHRD V1 **** C7MWS2_SACVD); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016878 NbS00012536g0009.1 protein AED:0.02 eAED:0.02 QI:182|1|1|1|1|1|4|217|609; (*GB) gi|225442569|ref|XP_002279092.1| (e_value=0.0) PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00045611g0001.1 protein AED:0.34 eAED:0.36 QI:174|0.66|0.81|0.93|1|1|16|51|562; (*GB) gi|356568398|ref|XP_003552398.1| (e_value=0.0) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*SWP) sp|Q5PQL3|SPP2B_RAT (e_value=2e-47) Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1;; (*TAIR) AT1G63690.1 (e_value=0.0) | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540;; (*ITAG) Solyc01g094680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77882950-77894918 transcript_region:SL2.40ch01:77882950..77894918+ go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00046054g0007.1 protein AED:0.01 eAED:0.01 QI:258|0.8|0.83|1|0.8|0.66|6|569|259; (*GB) gi|225448176|ref|XP_002266061.1| (e_value=6e-51) PREDICTED: uncharacterized membrane protein At4g06598 [Vitis vinifera];; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=4e-16) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G35490.1 (e_value=2e-40) | Symbols: | bZIP family transcription factor | chr1:13061856-13063166 FORWARD LENGTH=300;; (*ITAG) Solyc11g020950.1.1 (e_value=7e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:12975389-12977033 transcript_region:SL2.40ch11:12975389..12977033- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 **** Q2R8T2_ORYSJ); contains Interpro domain(s) IPR004827 Basic-leucine zipper (bZIP) transcription factor "; GO:0016563,GO:0003677 NbS00046054g0010.1 protein AED:0.24 eAED:0.31 QI:98|0.33|0.2|0.9|0.33|0.3|10|0|764; (*GB) gi|296081013|emb|CBI18517.3| (e_value=8e-108) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G27510.1 (e_value=3e-49) | Symbols: | unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13746284-13748996 REVERSE LENGTH=728;; (*ITAG) Solyc11g020910.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:12908978-12916288 transcript_region:SL2.40ch11:12908978..12916288+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032860g0002.1 protein AED:0.22 eAED:0.22 QI:74|1|1|1|1|1|2|196|146; (*GB) gi|256141|gb|AAB23378.1| (e_value=3e-96) orf [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=4e-31) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70890.1 (e_value=2e-25) | Symbols: MLP43 | MLP-like protein 43 | chr1:26725912-26726489 REVERSE LENGTH=158;; (*ITAG) Solyc08g023660.2.1 (e_value=9e-86) genomic_reference:SL2.40ch08 gene_region:17737993-17739269 transcript_region:SL2.40ch08:17737993..17739269+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00032860g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|146; (*GB) gi|256141|gb|AAB23378.1| (e_value=3e-96) orf [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=4e-31) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70890.1 (e_value=2e-25) | Symbols: MLP43 | MLP-like protein 43 | chr1:26725912-26726489 REVERSE LENGTH=158;; (*ITAG) Solyc08g023660.2.1 (e_value=9e-86) genomic_reference:SL2.40ch08 gene_region:17737993-17739269 transcript_region:SL2.40ch08:17737993..17739269+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00043819g0002.1 protein AED:0.20 eAED:0.20 QI:13|1|0.9|1|0.77|0.7|10|0|626; (*GB) gi|359489252|ref|XP_002263787.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=1e-104) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc01g088400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00043819g0003.1 protein AED:0.53 eAED:0.54 QI:0|0|0|1|1|1|3|0|122 NbS00017875g0011.1 protein AED:0.00 eAED:0.05 QI:0|0|0|1|1|1|3|0|416; (*GB) gi|121489791|emb|CAK18867.1| (e_value=2e-51) putative calmodulin binding protein precursor [Phillyrea latifolia];; (*TAIR) AT4G23060.1 (e_value=4e-17) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g080470.2.1 (e_value=9e-60) genomic_reference:SL2.40ch08 gene_region:60928845-60932810 transcript_region:SL2.40ch08:60928845..60932810+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6STZ4_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00017875g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|190358875|sp|P81370.2|TLP_ACTDE (e_value=3e-108) RecName: Full=Thaumatin-like protein; AltName: Allergen=Act d 2; Flags: Precursor;; (*SWP) sp|P81370|TLP_ACTDE (e_value=8e-110) Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2;; (*TAIR) AT4G11650.1 (e_value=6e-104) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc12g056360.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47669474-47670163 transcript_region:SL2.40ch12:47669474..47670163+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q93XD4_SAMNI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00017875g0012.1 protein AED:0.23 eAED:0.26 QI:0|0|0.25|0.75|1|1|4|1143|190; (*GB) gi|115459988|ref|NP_001053594.1| (e_value=1e-58) Os04g0569000 [Oryza sativa Japonica Group];; (*SWP) sp|Q641W4|RFC2_RAT (e_value=7e-46) Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1;; (*TAIR) AT1G63160.1 (e_value=2e-59) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=2e-62) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00017875g0010.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.5|1|0.66|0.75|4|0|269; (*GB) gi|255537347|ref|XP_002509740.1| (e_value=7e-78) cleavage and polyadenylation specificity factor, putative [Ricinus communis];; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=3e-66) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT4G11680.1 (e_value=2e-67) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr4:7053737-7055516 REVERSE LENGTH=390;; (*ITAG) Solyc12g056400.1.1 (e_value=1e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47682895-47685829 transcript_region:SL2.40ch12:47682895..47685829+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00024954g0005.1 protein AED:0.01 eAED:0.01 QI:83|1|1|1|0.33|0.42|7|441|219; (*GB) gi|224061971|ref|XP_002300690.1| (e_value=5e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GR35|F206A_XENLA (e_value=1e-26) Protein FAM206A OS=Xenopus laevis GN=fam206a PE=2 SV=1;; (*TAIR) AT1G75980.1 (e_value=1e-88) | Symbols: | Single hybrid motif superfamily protein | chr1:28522936-28524302 REVERSE LENGTH=225;; (*ITAG) Solyc04g081850.2.1 (e_value=4e-122) genomic_reference:SL2.40ch04 gene_region:63319244-63321839 transcript_region:SL2.40ch04:63319244..63321839- go_terms:GO:0005515 functional_description:"UPF0436 protein C9orf6 homolog (AHRD V1 ***- CI006_XENLA); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005515 NbS00024954g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|343; (*GB) gi|224065749|ref|XP_002301952.1| (e_value=6e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DYE5|U496K_ARATH (e_value=6e-63) UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2;; (*TAIR) AT1G20180.1 (e_value=5e-64) | Symbols: | Protein of unknown function (DUF677) | chr1:6996354-6997779 FORWARD LENGTH=390;; (*ITAG) Solyc04g081840.2.1 (e_value=4e-167) genomic_reference:SL2.40ch04 gene_region:63315552-63319148 transcript_region:SL2.40ch04:63315552..63319148+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00007027g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|174; (*GB) gi|27529822|dbj|BAC53926.1| (e_value=1e-98) NtEPc-like protein [Nicotiana tabacum];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=7e-20) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT1G79800.1 (e_value=1e-39) | Symbols: ENODL7, AtENODL7 | early nodulin-like protein 7 | chr1:30018549-30019217 FORWARD LENGTH=192;; (*ITAG) Solyc03g120860.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:63157115-63158046 transcript_region:SL2.40ch03:63157115..63158046- go_terms:GO:0009055 functional_description:"Early nodulin-like protein 1 (AHRD V1 *--- B6TP28_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00007027g0009.1 protein AED:0.13 eAED:0.13 QI:197|1|1|1|0.92|0.86|15|612|605; (*GB) gi|225442531|ref|XP_002284134.1| (e_value=0.0) PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [Vitis vinifera];; (*SWP) sp|P08927|RUBB_PEA (e_value=0.0) RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2;; (*TAIR) AT1G55490.2 (e_value=0.0) | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715717-20718673 REVERSE LENGTH=600;; (*ITAG) Solyc03g120850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63150621-63156052 transcript_region:SL2.40ch03:63150621..63156052- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00007027g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|0.33|1|1|1|3|0|335; (*GB) gi|255549868|ref|XP_002515985.1| (e_value=2e-156) Nucleoporin NUP53, putative [Ricinus communis];; (*SWP) sp|Q6P6X9|NUP53_DANRE (e_value=6e-17) Nucleoporin NUP53 OS=Danio rerio GN=nup35 PE=1 SV=1;; (*TAIR) AT3G16310.1 (e_value=7e-147) | Symbols: | mitotic phosphoprotein N' end (MPPN) family protein | chr3:5526593-5528106 REVERSE LENGTH=329;; (*ITAG) Solyc03g120880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63161053-63167269 transcript_region:SL2.40ch03:63161053..63167269- functional_description:"Nucleoporin NUP53 (AHRD V1 *--- C3KIJ6_ANOFI); contains Interpro domain(s) IPR007846 MPPN "; NbS00007027g0015.1 protein AED:0.11 eAED:0.20 QI:0|0|0|1|0|0|3|0|191; (*GB) gi|343796222|gb|AEM63548.1| (e_value=1e-13) dehydration-responsive element-binding protein DREB1 [Solanum tuberosum];; (*ITAG) Solyc03g120840.1.1 (e_value=5e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63144160-63144909 transcript_region:SL2.40ch03:63144160..63144909+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00012416g0005.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|207; (*GB) gi|297826089|ref|XP_002880927.1| (e_value=3e-82) lactoylglutathione lyase family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G28420.1 (e_value=2e-84) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr2:12157946-12158500 FORWARD LENGTH=184;; (*ITAG) Solyc01g088010.1.1 (e_value=1e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74612628-74613407 transcript_region:SL2.40ch01:74612628..74613407+ go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase family protein (AHRD V1 **** D7LHM5_ARALY); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00031693g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.57|0.85|1|1|7|0|272; (*GB) gi|75298155|sp|Q84UV8.1|NEC3_NICLS (e_value=5e-134) RecName: Full=Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3; AltName: Full=Nectarin-III; Contains: RecName: Full=Nectarin-2; Flags: Precursor;; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=1e-135) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT1G08080.1 (e_value=7e-109) | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase 7 | chr1:2517022-2518546 REVERSE LENGTH=275;; (*ITAG) Solyc11g069640.1.1 (e_value=5e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51355366-51357989 transcript_region:SL2.40ch11:51355366..51357989- go_terms:GO:0006730 functional_description:"Carbonic anhydrase family protein (AHRD V1 ***- D7KHY6_ARALY); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0006730 NbS00031693g0002.1 protein AED:0.29 eAED:0.29 QI:345|1|1|1|0.83|0.85|7|539|436; (*GB) gi|255566955|ref|XP_002524460.1| (e_value=0.0) mutt/nudix hydrolase, putative [Ricinus communis];; (*SWP) sp|Q94A82|NUD19_ARATH (e_value=0.0) Nudix hydrolase 19, chloroplastic OS=Arabidopsis thaliana GN=NUDT19 PE=1 SV=1;; (*TAIR) AT5G20070.1 (e_value=0.0) | Symbols: ATNUDT19, ATNUDX19, NUDX19 | nudix hydrolase homolog 19 | chr5:6779893-6782308 FORWARD LENGTH=438;; (*ITAG) Solyc06g075080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42968688-42973423 transcript_region:SL2.40ch06:42968688..42973423- go_terms:GO:0016787,GO:0046872 functional_description:"NADH pyrophosphatase (AHRD V1 *-*- D3NRP0_AZOS1); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787,GO:0046872 NbS00026609g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|282; (*GB) gi|224129226|ref|XP_002320532.1| (e_value=8e-26) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g006190.1.1 (e_value=1e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:737076-738293 transcript_region:SL2.40ch12:737076..738293+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004754g0003.1 protein AED:0.09 eAED:0.09 QI:105|0.87|0.77|0.88|0.87|0.77|9|0|249; (*GB) gi|225441449|ref|XP_002279533.1| (e_value=2e-128) PREDICTED: DNA polymerase delta small subunit [Vitis vinifera];; (*SWP) sp|O48520|DPOD2_ARATH (e_value=1e-126) DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2;; (*TAIR) AT2G42120.2 (e_value=1e-127) | Symbols: POLD2 | DNA polymerase delta small subunit | chr2:17563282-17565965 REVERSE LENGTH=440;; (*ITAG) Solyc03g063340.2.1 (e_value=2e-148) genomic_reference:SL2.40ch03 gene_region:31738398-31763626 transcript_region:SL2.40ch03:31738398..31763626+ go_terms:GO:0005515 functional_description:"DNA polymerase subunit delta-2 (AHRD V1 ***- B5X3P2_SALSA); contains Interpro domain(s) IPR007185 DNA polymerase alpha/epsilon, subunit B "; GO:0005515 NbS00004754g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.57|1|0.83|0.71|7|0|207; (*GB) gi|356504864|ref|XP_003521214.1| (e_value=3e-98) PREDICTED: DNA polymerase delta small subunit-like [Glycine max];; (*SWP) sp|O48520|DPOD2_ARATH (e_value=1e-95) DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=2;; (*TAIR) AT2G42120.1 (e_value=8e-97) | Symbols: POLD2 | DNA polymerase delta small subunit | chr2:17563282-17565965 REVERSE LENGTH=441;; (*ITAG) Solyc03g063340.2.1 (e_value=6e-109) genomic_reference:SL2.40ch03 gene_region:31738398-31763626 transcript_region:SL2.40ch03:31738398..31763626+ go_terms:GO:0005515 functional_description:"DNA polymerase subunit delta-2 (AHRD V1 ***- B5X3P2_SALSA); contains Interpro domain(s) IPR007185 DNA polymerase alpha/epsilon, subunit B "; GO:0005515 NbS00004754g0013.1 protein AED:0.32 eAED:0.32 QI:0|0.83|0.57|0.85|1|1|7|0|407; (*GB) gi|296085428|emb|CBI29160.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54360.1 (e_value=1e-170) | Symbols: | zinc ion binding | chr3:20128570-20131581 REVERSE LENGTH=405;; (*ITAG) Solyc10g080520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61087663-61090599 transcript_region:SL2.40ch10:61087663..61090599- go_terms:GO:0016020,GO:0008270 functional_description:"E3 ubiquitin-protein ligase CHFR (AHRD V1 *--- CHFR_DANRE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0016020,GO:0008270 NbC26185607g0001.1 protein AED:0.10 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|224066911|ref|XP_002302275.1| (e_value=4e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G22110.1 (e_value=4e-13) | Symbols: | structural constituent of ribosome | chr1:7801625-7802473 REVERSE LENGTH=282;; (*ITAG) Solyc04g072650.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:57213467-57214075 transcript_region:SL2.40ch04:57213467..57214075- functional_description:"Unknown Protein (AHRD V1)"; NbS00015650g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.9|0.81|1|1|1|11|176|598; (*GB) gi|255559927|ref|XP_002520982.1| (e_value=0.0) F-box/leucine rich repeat protein, putative [Ricinus communis];; (*SWP) sp|Q8W104|FBL17_ARATH (e_value=5e-157) F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana GN=FBL17 PE=1 SV=1;; (*TAIR) AT3G54650.1 (e_value=4e-158) | Symbols: FBL17 | RNI-like superfamily protein | chr3:20226004-20228882 REVERSE LENGTH=593;; (*ITAG) Solyc09g065880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59750223-59755020 transcript_region:SL2.40ch09:59750223..59755020- go_terms:GO:0005515,GO:0004842 functional_description:"Leucine Rich Repeat family protein expressed (AHRD V1 ***- Q10GD4_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00015650g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|0.5|0.66|3|0|317; (*GB) gi|297822779|ref|XP_002879272.1| (e_value=2e-18) hypothetical protein ARALYDRAFT_481979 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P26569|H12_ARATH (e_value=4e-19) Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1;; (*TAIR) AT2G30620.1 (e_value=3e-20) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr2:13045360-13046267 FORWARD LENGTH=273;; (*ITAG) Solyc06g084020.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:45575496-45576696 transcript_region:SL2.40ch06:45575496..45576696- go_terms:GO:0005634,GO:0000786 functional_description:"Histone H1 (AHRD V1 *-*- O65820_SOLLC); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbS00036456g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|541; (*GB) gi|225459754|ref|XP_002284756.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LN22|PPR54_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1;; (*TAIR) AT1G20300.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7029701-7031314 FORWARD LENGTH=537;; (*ITAG) Solyc04g081950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63382267-63384296 transcript_region:SL2.40ch04:63382267..63384296+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIB0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00036456g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|0.66|0|0|3|0|92 NbS00051802g0005.1 protein AED:0.44 eAED:0.48 QI:12|0.5|0.33|1|0.5|0.33|3|0|100; (*GB) gi|302142492|emb|CBI19695.3| (e_value=1e-47) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=5e-41) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=4e-42) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=4e-52) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00051802g0004.1 protein AED:0.37 eAED:0.65 QI:0|0.25|0.2|1|1|0.8|5|0|204; (*GB) gi|302142492|emb|CBI19695.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=8e-19) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=6e-20) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=2e-53) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00003361g0013.1 protein AED:0.10 eAED:0.15 QI:0|0.37|0.22|0.77|0.37|0.22|9|0|911; (*GB) gi|219921318|emb|CAQ51477.1| (e_value=0.0) putative MATE transporter [Nicotiana tabacum];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=1e-134) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT1G15150.1 (e_value=1e-142) | Symbols: | MATE efflux family protein | chr1:5212674-5214723 FORWARD LENGTH=487;; (*ITAG) Solyc02g091070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47068548-47070572 transcript_region:SL2.40ch02:47068548..47070572- go_terms:GO:0005215 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0005215 NbS00003361g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|1|0.66|0.75|4|0|555; (*GB) gi|225462809|ref|XP_002266004.1| (e_value=0.0) PREDICTED: 2-hydroxyacyl-CoA lyase [Vitis vinifera];; (*SWP) sp|Q9LF46|HACL_ARATH (e_value=0.0) 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=2 SV=1;; (*TAIR) AT5G17380.1 (e_value=0.0) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr5:5724920-5726720 REVERSE LENGTH=572;; (*ITAG) Solyc02g091100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47093169-47096847 transcript_region:SL2.40ch02:47093169..47096847- go_terms:GO:0016830,GO:0030976 functional_description:"Oxalyl-CoA decarboxylase (AHRD V1 **-- D5PWM9_COREQ); contains Interpro domain(s) IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP binding region "; GO:0016830,GO:0030976 NbS00003361g0012.1 protein AED:0.20 eAED:0.23 QI:0|1|0.6|1|0.75|0.8|5|0|370; (*GB) gi|219921318|emb|CAQ51477.1| (e_value=9e-160) putative MATE transporter [Nicotiana tabacum];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=8e-116) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT2G04080.1 (e_value=6e-117) | Symbols: | MATE efflux family protein | chr2:1357327-1359159 REVERSE LENGTH=476;; (*ITAG) Solyc02g091080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47073657-47075912 transcript_region:SL2.40ch02:47073657..47075912- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_SHIF8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00003361g0006.1 protein AED:0.39 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|15222161|ref|NP_177661.1| (e_value=9e-22) RAD-like 6 protein [Arabidopsis thaliana];; (*TAIR) AT1G75250.1 (e_value=2e-24) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc04g080500.2.1 (e_value=5e-31) genomic_reference:SL2.40ch04 gene_region:62254318-62254971 transcript_region:SL2.40ch04:62254318..62254971- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00003361g0016.1 protein AED:0.58 eAED:0.63 QI:0|0|0.25|0.5|0|0.25|4|0|109; (*GB) gi|224065226|ref|XP_002301726.1| (e_value=4e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=4e-17) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT1G66780.1 (e_value=3e-24) | Symbols: | MATE efflux family protein | chr1:24909213-24911485 FORWARD LENGTH=485;; (*ITAG) Solyc02g091080.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47073657-47075912 transcript_region:SL2.40ch02:47073657..47075912- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_SHIF8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00005595g0004.1 protein AED:0.06 eAED:0.06 QI:113|0.85|0.87|1|0.71|0.87|8|25|297; (*GB) gi|255565447|ref|XP_002523714.1| (e_value=6e-90) Shugoshin-1, putative [Ricinus communis];; (*SWP) sp|Q4QSC8|SGO1_MAIZE (e_value=2e-16) Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1;; (*TAIR) AT5G04320.2 (e_value=8e-25) | Symbols: | Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470;; (*ITAG) Solyc11g066350.1.1 (e_value=1e-175) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49177469-49180697 transcript_region:SL2.40ch11:49177469..49180697+ functional_description:"Shugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)"; NbS00039744g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|11611667|gb|AAG39002.1|AF213399_1 (e_value=0.0) SLT1 protein [Nicotiana tabacum];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc10g086420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64566624-64568126 transcript_region:SL2.40ch10:64566624..64568126- go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0006508 NbS00039744g0003.1 protein AED:0.25 eAED:0.32 QI:0|0|0|0.75|1|1|4|0|618; (*GB) gi|123620|sp|P27322.1|HSP72_SOLLC (e_value=0.0) RecName: Full=Heat shock cognate 70 kDa protein 2;; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc10g086410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:64561395-64564764 transcript_region:SL2.40ch10:64561395..64564764+ go_terms:GO:0051082 functional_description:"Heat shock protein 70-3 (AHRD V1 ***- Q67BD0_TOBAC); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbS00011355g0001.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.25|1|1|1|4|0|222; (*GB) gi|365222946|gb|AEW69825.1| (e_value=1e-71) Hop-interacting protein THI105 [Solanum lycopersicum];; (*SWP) sp|Q54Y03|KAD6_DICDI (e_value=3e-41) Probable adenylate kinase isoenzyme 6 OS=Dictyostelium discoideum GN=DDB_G0278493 PE=3 SV=1;; (*TAIR) AT5G60340.1 (e_value=3e-54) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24275098-24275891 REVERSE LENGTH=178;; (*ITAG) Solyc11g072410.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52664923-52667332 transcript_region:SL2.40ch11:52664923..52667332+ functional_description:"Adenylate kinase isoenzyme 6 (AHRD V1 **-- B5X3S3_SALSA)"; NbS00011355g0012.1 protein AED:0.13 eAED:0.22 QI:55|0.66|0.25|1|0.66|0.5|4|0|167; (*GB) gi|113205294|gb|AAT40555.2| (e_value=2e-86) Translation elongation factor, putative [Solanum demissum];; (*TAIR) AT1G07910.2 (e_value=1e-50) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072420.1.1 (e_value=5e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52667898-52692241 transcript_region:SL2.40ch11:52667898..52692241- go_terms:GO:0004113,GO:0003972,GO:0051731 functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 **-* Q0WZC1_WHEAT)"; GO:0004113,GO:0003972,GO:0051731 NbS00011355g0013.1 protein AED:0.24 eAED:0.23 QI:147|0.7|0.61|1|0.85|0.85|21|0|956; (*GB) gi|388604525|gb|AFK76482.1| (e_value=0.0) tRNA ligase [Solanum melongena];; (*TAIR) AT1G07910.2 (e_value=0.0) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52667898-52692241 transcript_region:SL2.40ch11:52667898..52692241- go_terms:GO:0004113,GO:0003972,GO:0051731 functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 **-* Q0WZC1_WHEAT)"; GO:0004113,GO:0003972,GO:0051731 NbS00011355g0014.1 protein AED:0.30 eAED:0.34 QI:0|0.66|0.57|1|0.66|0.57|7|0|613; (*GB) gi|48209969|gb|AAT40532.1| (e_value=0.0) hydrolase, alpha/beta fold family protein [Solanum demissum];; (*TAIR) AT5G02970.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:695391-697412 FORWARD LENGTH=514;; (*ITAG) Solyc11g072440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52697855-52701602 transcript_region:SL2.40ch11:52697855..52701602- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- Q6L459_SOLDE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00011355g0109.1 protein AED:0.07 eAED:0.07 QI:222|1|1|1|1|1|5|560|168 NbS00019827g0003.1 protein AED:0.12 eAED:0.12 QI:202|1|1|1|1|1|4|607|884; (*GB) gi|225438990|ref|XP_002279613.1| (e_value=0.0) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9FJX6|FH6_ARATH (e_value=0.0) Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1;; (*TAIR) AT5G67470.1 (e_value=0.0) | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:26926835-26930212 FORWARD LENGTH=899;; (*ITAG) Solyc02g092470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48091589-48096584 transcript_region:SL2.40ch02:48091589..48096584- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00024391g0011.1 protein AED:0.09 eAED:0.09 QI:257|0.91|0.84|1|0.83|0.84|13|465|478; (*GB) gi|6328415|dbj|BAA86386.1| (e_value=0.0) transcription factor [Nicotiana tabacum];; (*SWP) sp|Q9FV71|E2FB_ARATH (e_value=2e-133) Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1;; (*TAIR) AT5G22220.2 (e_value=1e-134) | Symbols: E2F1, E2FB, ATE2FB | E2F transcription factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469;; (*ITAG) Solyc11g068800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50504117-50508808 transcript_region:SL2.40ch11:50504117..50508808- go_terms:GO:0005667 functional_description:"Transcription factor (E2F) (AHRD V1 ***- Q9FNS0_CHERU); contains Interpro domain(s) IPR015633 E2F Family "; GO:0005667 NbS00024391g0003.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|351723889|ref|NP_001235247.1| (e_value=3e-15) uncharacterized protein LOC100527123 [Glycine max];; (*ITAG) Solyc06g074020.2.1 (e_value=6e-42) genomic_reference:SL2.40ch06 gene_region:42152025-42153093 transcript_region:SL2.40ch06:42152025..42153093- functional_description:"Os04g0415100 protein (Fragment) (AHRD V1 *--- Q0JDB5_ORYSJ); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00036269g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|1|1|3|0|414; (*GB) gi|388510290|gb|AFK43211.1| (e_value=6e-74) unknown [Lotus japonicus];; (*SWP) sp|Q9M088|E135_ARATH (e_value=3e-65) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT4G17180.1 (e_value=8e-70) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:9646541-9648045 FORWARD LENGTH=475;; (*ITAG) Solyc05g015160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9962131-9963998 transcript_region:SL2.40ch05:9962131..9963998- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6TX61_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00036269g0007.1 protein AED:0.10 eAED:0.10 QI:328|1|0.8|1|1|1|5|0|843; (*GB) gi|225465743|ref|XP_002264820.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255521 [Vitis vinifera];; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc05g016240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15260801-15268723 transcript_region:SL2.40ch05:15260801..15268723- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00043864g0004.1 protein AED:0.11 eAED:0.11 QI:634|0.83|0.71|1|0.83|0.71|7|0|829; (*GB) gi|255578890|ref|XP_002530298.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|O22864|NLP8_ARATH (e_value=0.0) Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1;; (*TAIR) AT2G43500.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr2:18062715-18066450 FORWARD LENGTH=947;; (*ITAG) Solyc11g045350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37656830-37662843 transcript_region:SL2.40ch11:37656830..37662843+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER14_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00043864g0002.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|0|0|2|76|129; (*GB) gi|255578890|ref|XP_002530298.1| (e_value=6e-58) transcription factor, putative [Ricinus communis];; (*SWP) sp|O22864|NLP8_ARATH (e_value=9e-43) Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1;; (*TAIR) AT2G43500.2 (e_value=7e-44) | Symbols: | Plant regulator RWP-RK family protein | chr2:18062715-18066450 FORWARD LENGTH=947;; (*ITAG) Solyc11g045350.1.1 (e_value=2e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37656830-37662843 transcript_region:SL2.40ch11:37656830..37662843+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER14_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00002493g0018.1 protein AED:0.29 eAED:0.29 QI:346|1|1|1|0.75|1|5|411|301; (*GB) gi|225431934|ref|XP_002277394.1| (e_value=2e-147) PREDICTED: ubiquitin-conjugating enzyme E2 32 [Vitis vinifera];; (*SWP) sp|Q9LSP7|UBC32_ARATH (e_value=7e-125) Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1;; (*TAIR) AT3G17000.1 (e_value=5e-126) | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 | chr3:5797296-5799467 FORWARD LENGTH=309;; (*ITAG) Solyc12g099310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64838370-64841676 transcript_region:SL2.40ch12:64838370..64841676- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 31 (AHRD V1 ***- D7L699_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00002493g0022.1 protein AED:0.31 eAED:0.31 QI:211|0.90|0.86|1|0.77|0.78|23|0|869; (*GB) gi|225431916|ref|XP_002276905.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 [Vitis vinifera];; (*SWP) sp|Q5SP90|PP4R3_DANRE (e_value=1e-113) Serine/threonine-protein phosphatase 4 regulatory subunit 3 OS=Danio rerio GN=smek1 PE=1 SV=1;; (*TAIR) AT3G06670.1 (e_value=0.0) | Symbols: | binding | chr3:2105908-2113136 REVERSE LENGTH=865;; (*ITAG) Solyc12g099320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64843563-64859274 transcript_region:SL2.40ch12:64843563..64859274- go_terms:GO:0005488 functional_description:"Serine/threonine-protein phosphatase 4 regulatory subunit 3 (AHRD V1 **-- PP4R3_DANRE); contains Interpro domain(s) IPR006887 Protein of unknown function DUF625 "; GO:0005488 NbS00002493g0016.1 protein AED:0.43 eAED:0.43 QI:673|0.25|0.2|0.6|1|1|5|0|96 NbS00002493g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|3|0|966; (*GB) gi|53793725|gb|AAU93588.1| (e_value=0.0) late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=3e-19) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00002493g0020.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|69 NbS00002493g0003.1 protein AED:0.42 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|53854474|gb|AAU95633.1| (e_value=3e-19) R1 [Solanum tuberosum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=9e-20) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*ITAG) Solyc05g007630.2.1 (e_value=2e-26) genomic_reference:SL2.40ch05 gene_region:2145078-2149204 transcript_region:SL2.40ch05:2145078..2149204- go_terms:GO:0006952,GO:0045893,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0045893,GO:0006915 NbS00002493g0015.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|179; (*GB) gi|224111964|ref|XP_002316037.1| (e_value=3e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g099300.1.1 (e_value=9e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64836400-64837548 transcript_region:SL2.40ch12:64836400..64837548+ functional_description:"Fgenesh protein 60 (AHRD V1 ***- Q1ZY19_BETVU); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00013916g0002.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|564; (*GB) gi|224063076|ref|XP_002300984.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VE61|RN181_DROME (e_value=8e-13) E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster GN=CG7694 PE=2 SV=1;; (*TAIR) AT1G26800.1 (e_value=1e-16) | Symbols: | RING/U-box superfamily protein | chr1:9285576-9286190 REVERSE LENGTH=204;; (*ITAG) Solyc11g011570.1.1 (e_value=1e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4638052-4639160 transcript_region:SL2.40ch11:4638052..4639160- go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_DANRE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00012618g0011.1 protein AED:0.31 eAED:0.31 QI:202|0.83|0.78|1|0.83|0.78|19|0|733; (*GB) gi|147838266|emb|CAN63376.1| (e_value=0.0) hypothetical protein VITISV_042412 [Vitis vinifera];; (*SWP) sp|Q28FH2|NTKL_XENTR (e_value=4e-75) N-terminal kinase-like protein OS=Xenopus tropicalis GN=scyl1 PE=2 SV=1;; (*TAIR) AT2G40730.1 (e_value=0.0) | Symbols: | Protein kinase family protein with ARM repeat domain | chr2:16990083-16996072 REVERSE LENGTH=798;; (*ITAG) Solyc06g048890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28388745-28410623 transcript_region:SL2.40ch06:28388745..28410623+ go_terms:GO:0005515 functional_description:"Protein kinase (AHRD V1 ***- A8HT40_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00005783g0001.1 protein AED:0.16 eAED:0.22 QI:0|0|0|1|1|1|3|0|422; (*GB) gi|347953950|gb|AEP33595.1| (e_value=0.0) CBL-interacting protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|O65554|CIPK6_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1;; (*TAIR) AT4G30960.1 (e_value=0.0) | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441;; (*ITAG) Solyc07g005440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:339058-340332 transcript_region:SL2.40ch07:339058..340332- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 9 (AHRD V1 **** A0MNJ6_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00031247g0008.1 protein AED:0.27 eAED:0.28 QI:0|0.55|0.6|0.9|0.55|0.5|10|452|513; (*GB) gi|20086364|dbj|BAB88859.1| (e_value=6e-90) putative multiprotein bridging factor 1 [Nicotiana tabacum];; (*SWP) sp|Q9LXT3|MBF1B_ARATH (e_value=4e-73) Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1;; (*TAIR) AT3G58680.1 (e_value=3e-74) | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142;; (*ITAG) Solyc07g062410.2.1 (e_value=1e-101) genomic_reference:SL2.40ch07 gene_region:62388828-62392637 transcript_region:SL2.40ch07:62388828..62392637- functional_description:"Unknown Protein (AHRD V1)"; NbS00031247g0009.1 protein AED:0.23 eAED:0.23 QI:108|0.75|0.6|1|0.75|0.6|5|0|417; (*GB) gi|359493774|ref|XP_003634665.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 7-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93VI8|TLP7_ARATH (e_value=5e-176) Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1;; (*TAIR) AT1G53320.1 (e_value=4e-177) | Symbols: AtTLP7, TLP7 | tubby like protein 7 | chr1:19891237-19893429 REVERSE LENGTH=379;; (*ITAG) Solyc07g062390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62379498-62385146 transcript_region:SL2.40ch07:62379498..62385146+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 7 (AHRD V1 ***- TLP7_ARATH); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00017914g0004.1 protein AED:0.05 eAED:0.05 QI:248|0.66|0.71|1|0|0.28|7|293|303; (*GB) gi|374082402|gb|AEY81371.1| (e_value=1e-112) longevity assurance protein 1-like protein [Gossypium hirsutum];; (*SWP) sp|Q9LJK3|LAG12_ARATH (e_value=3e-104) LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1;; (*TAIR) AT3G19260.1 (e_value=2e-105) | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 | chr3:6669448-6671257 REVERSE LENGTH=296;; (*ITAG) Solyc01g108230.2.1 (e_value=8e-141) genomic_reference:SL2.40ch01 gene_region:87342405-87350641 transcript_region:SL2.40ch01:87342405..87350641+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00004766g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0.5|1|1|1|2|282|304; (*GB) gi|357480439|ref|XP_003610505.1| (e_value=1e-70) hypothetical protein MTR_4g132940 [Medicago truncatula];; (*TAIR) AT1G62420.1 (e_value=9e-46) | Symbols: | Protein of unknown function (DUF506) | chr1:23102937-23104604 REVERSE LENGTH=283;; (*ITAG) Solyc11g012120.1.1 (e_value=6e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5041281-5042288 transcript_region:SL2.40ch11:5041281..5042288- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00025890g0005.1 protein AED:0.16 eAED:0.61 QI:0|1|0|1|1|1|2|0|111; (*GB) gi|356562445|ref|XP_003549482.1| (e_value=5e-34) PREDICTED: protein YIPF6-like [Glycine max];; (*TAIR) AT2G18840.1 (e_value=2e-35) | Symbols: | Integral membrane Yip1 family protein | chr2:8158288-8159848 FORWARD LENGTH=281;; (*ITAG) Solyc07g018220.2.1 (e_value=4e-37) genomic_reference:SL2.40ch07 gene_region:9780819-9785964 transcript_region:SL2.40ch07:9780819..9785964- go_terms:GO:0017137 functional_description:"Yip1 domain containing protein expressed (AHRD V1 **-- D8L9M4_WHEAT); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00022149g0008.1 protein AED:0.18 eAED:0.22 QI:0|0.73|0.65|0.9|0.78|0.75|20|0|769; (*GB) gi|296088515|emb|CBI37506.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NYV6|RRN3_HUMAN (e_value=6e-29) RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1;; (*TAIR) AT2G34750.1 (e_value=1e-162) | Symbols: | RNA polymerase I specific transcription initiation factor RRN3 protein | chr2:14660449-14663792 REVERSE LENGTH=613;; (*ITAG) Solyc02g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40610636-40618232 transcript_region:SL2.40ch02:40610636..40618232- go_terms:GO:0003701 functional_description:"RNA polymerase I-specific transcription initiation factor RRN3 (AHRD V1 **** RRN3_MOUSE); contains Interpro domain(s) IPR007991 RNA polymerase I specific transcription initiation factor RRN3 "; GO:0003701 NbS00022149g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|5|270|330; (*GB) gi|225457646|ref|XP_002275328.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100263332 [Vitis vinifera];; (*TAIR) AT2G33620.4 (e_value=6e-37) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc02g038760.2.1 (e_value=1e-64) genomic_reference:SL2.40ch02 gene_region:22246946-22251700 transcript_region:SL2.40ch02:22246946..22251700+ go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 ***- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbC24548146g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|32|110; (*GB) gi|147805930|emb|CAN74401.1| (e_value=3e-42) hypothetical protein VITISV_043630 [Vitis vinifera];; (*TAIR) AT1G51350.1 (e_value=5e-43) | Symbols: | ARM repeat superfamily protein | chr1:19035851-19038738 FORWARD LENGTH=666;; (*ITAG) Solyc11g065750.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48428800-48442402 transcript_region:SL2.40ch11:48428800..48442402- go_terms:GO:0005488 functional_description:"Armadillo repeat-containing protein (AHRD V1 *-*- Q55D97_DICDI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00043896g0009.1 protein AED:0.27 eAED:0.27 QI:26|0.6|0.5|1|0.2|0.5|6|200|386; (*GB) gi|357460367|ref|XP_003600465.1| (e_value=4e-157) Translocation protein sec62 [Medicago truncatula];; (*TAIR) AT3G20920.1 (e_value=5e-148) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=365;; (*ITAG) Solyc11g065690.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48305577-48311971 transcript_region:SL2.40ch11:48305577..48311971+ go_terms:GO:0016021 functional_description:"Protein transporter (AHRD V1 **-- B6UFL6_MAIZE); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00043896g0008.1 protein AED:0.61 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|112; (*GB) gi|79313309|ref|NP_001030734.1| (e_value=3e-25) translocation protein SEC62 [Arabidopsis thaliana];; (*TAIR) AT3G20920.2 (e_value=6e-28) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=364;; (*ITAG) Solyc01g008470.2.1 (e_value=2e-28) genomic_reference:SL2.40ch01 gene_region:2548568-2554744 transcript_region:SL2.40ch01:2548568..2554744+ go_terms:GO:0016021 functional_description:"Non-selective cation channel-2 family (AHRD V1 **-- C1N231_MICPS); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00043896g0007.1 protein AED:0.16 eAED:0.16 QI:1387|1|1|1|0.8|0.66|6|403|302; (*GB) gi|148595726|emb|CAM12542.1| (e_value=1e-98) YA4 [Antirrhinum majus];; (*SWP) sp|Q9LXV5|NFYA1_ARATH (e_value=5e-55) Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1;; (*TAIR) AT5G12840.3 (e_value=4e-56) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=272;; (*ITAG) Solyc11g065700.1.1 (e_value=2e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48316685-48322085 transcript_region:SL2.40ch11:48316685..48322085- go_terms:GO:0005634 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-*- B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634 NbS00056393g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|1|1|2|0|454; (*GB) gi|225451709|ref|XP_002276804.1| (e_value=1e-176) PREDICTED: UDP-glycosyltransferase 83A1 [Vitis vinifera];; (*SWP) sp|Q9SGA8|U83A1_ARATH (e_value=3e-131) UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana GN=UGT83A1 PE=2 SV=1;; (*TAIR) AT3G02100.1 (e_value=2e-132) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464;; (*ITAG) Solyc02g066960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31791402-31793370 transcript_region:SL2.40ch02:31791402..31793370+ go_terms:GO:0008194 functional_description:"UDP-glycosyltransferase (AHRD V1 **** D7KLQ4_ARALY); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008194 NbS00005646g0005.1 protein AED:0.22 eAED:0.22 QI:514|0.77|0.7|1|0.77|0.7|10|415|623; (*GB) gi|225437237|ref|XP_002282102.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera];; (*SWP) sp|Q9M9Y5|GAUT6_ARATH (e_value=0.0) Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1;; (*TAIR) AT1G06780.1 (e_value=0.0) | Symbols: GAUT6 | galacturonosyltransferase 6 | chr1:2083689-2086853 FORWARD LENGTH=589;; (*ITAG) Solyc07g005360.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:279497-286575 transcript_region:SL2.40ch07:279497..286575- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00049932g0002.1 protein AED:0.18 eAED:0.18 QI:383|0.93|0.87|1|1|1|16|0|652; (*GB) gi|5902707|sp|Q40412.1|ABA2_NICPL (e_value=0.0) RecName: Full=Zeaxanthin epoxidase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40412|ABA2_NICPL (e_value=0.0) Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1;; (*TAIR) AT5G67030.1 (e_value=0.0) | Symbols: ABA1, LOS6, NPQ2, ATABA1, ZEP, IBS3, ATZEP | zeaxanthin epoxidase (ZEP) (ABA1) | chr5:26753745-26757090 REVERSE LENGTH=667;; (*ITAG) Solyc02g090890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46947558-46953158 transcript_region:SL2.40ch02:46947558..46953158- go_terms:GO:0009540 functional_description:"Zeaxanthin epoxidase, chloroplastic"; GO:0009540 NbS00032622g0001.1 protein AED:0.00 eAED:0.07 QI:0|0|0|1|1|1|2|0|472; (*GB) gi|224112943|ref|XP_002316340.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49290.1 (e_value=2e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13620.1); Has 99 Blast hits to 93 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18232608-18233624 REVERSE LENGTH=338;; (*ITAG) Solyc04g049860.1.1 (e_value=3e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:43000816-43003126 transcript_region:SL2.40ch04:43000816..43003126- functional_description:"Unknown Protein (AHRD V1)"; NbS00060669g0007.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|0.5|0.33|3|0|468; (*GB) gi|297734234|emb|CBI15481.3| (e_value=1e-152) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G68390.1 (e_value=2e-138) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408;; (*ITAG) Solyc12g036400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30960699-30962488 transcript_region:SL2.40ch12:30960699..30962488- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 *-*- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00060669g0006.1 protein AED:0.14 eAED:0.14 QI:439|1|1|1|1|1|9|528|655; (*GB) gi|225465785|ref|XP_002268387.1| (e_value=0.0) PREDICTED: HBS1-like protein-like [Vitis vinifera];; (*SWP) sp|Q9Y450|HBS1L_HUMAN (e_value=9e-135) HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1;; (*TAIR) AT5G10630.1 (e_value=0.0) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00010100g0006.1 protein AED:0.04 eAED:0.04 QI:205|1|1|1|1|1|3|394|523; (*GB) gi|85068652|gb|ABC69406.1| (e_value=0.0) CYP84A14v1 [Nicotiana tabacum];; (*SWP) sp|Q42600|C84A1_ARATH (e_value=0.0) Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1;; (*TAIR) AT4G36220.1 (e_value=0.0) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc02g084570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42225222-42229073 transcript_region:SL2.40ch02:42225222..42229073- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00053814g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.71|0.75|0.87|0.85|0.75|8|0|460; (*GB) gi|359473220|ref|XP_003631270.1| (e_value=4e-107) PREDICTED: transcription factor bHLH90-like [Vitis vinifera];; (*SWP) sp|Q0WNR2|BH090_ARATH (e_value=6e-68) Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1;; (*TAIR) AT1G10610.1 (e_value=5e-69) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3506463-3508752 FORWARD LENGTH=441;; (*ITAG) Solyc05g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:240253-242750 transcript_region:SL2.40ch05:240253..242750- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 ***- Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00004434g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|357452371|ref|XP_003596462.1| (e_value=2e-19) hypothetical protein MTR_2g077840 [Medicago truncatula];; (*TAIR) AT2G07820.1 (e_value=2e-18) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:3457213-3457479 REVERSE LENGTH=88;; (*ITAG) Solyc01g065920.1.1 (e_value=5e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch01 gene_region:65024242-65024502 transcript_region:SL2.40ch01:65024242..65024502- functional_description:"Unknown Protein (AHRD V1)"; NbS00004434g0009.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|1|1|2|0|474; (*GB) gi|30016900|gb|AAP04000.1| (e_value=2e-150) EIL4 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=4e-46) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=3e-47) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc06g073730.1.1 (e_value=3e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41879453-41881270 transcript_region:SL2.40ch06:41879453..41881270- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00046626g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.71|0.85|0.83|1|7|0|260; (*GB) gi|224127468|ref|XP_002329285.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|O35678|MGLL_MOUSE (e_value=9e-15) Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1;; (*TAIR) AT5G16120.1 (e_value=1e-114) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5266048-5267775 FORWARD LENGTH=351;; (*ITAG) Solyc02g063160.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:29811816-29817553 transcript_region:SL2.40ch02:29811816..29817553+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9LF16_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00009939g0001.1 protein AED:0.23 eAED:0.23 QI:445|0|0.5|1|0|0.5|2|0|304; (*GB) gi|147820325|emb|CAN73573.1| (e_value=5e-99) hypothetical protein VITISV_007446 [Vitis vinifera];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=7e-22) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G10760.1 (e_value=4e-81) | Symbols: | Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335;; (*ITAG) Solyc10g080960.1.1 (e_value=4e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61464101-61464901 transcript_region:SL2.40ch10:61464101..61464901+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbC25883362g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.16|0.83|1|1|6|0|412; (*GB) gi|224127344|ref|XP_002329254.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O67409|TRPB2_AQUAE (e_value=3e-142) Tryptophan synthase beta chain 2 OS=Aquifex aeolicus (strain VF5) GN=trpB2 PE=3 SV=1;; (*TAIR) AT5G38530.1 (e_value=0.0) | Symbols: TSBtype2 | tryptophan synthase beta type 2 | chr5:15424097-15426294 FORWARD LENGTH=506;; (*ITAG) Solyc12g096190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63553620-63556459 transcript_region:SL2.40ch12:63553620..63556459+ go_terms:GO:0008152,GO:0000162 functional_description:"Tryptophan synthase beta chain (AHRD V1 ***- Q9FFW8_ARATH); contains Interpro domain(s) IPR006316 Tryptophan synthase, beta chain-like "; GO:0008152,GO:0000162 NbS00024730g0016.1 protein AED:0.13 eAED:0.13 QI:234|0.5|0.6|1|0.25|0.6|5|244|237; (*GB) gi|225423491|ref|XP_002269100.1| (e_value=3e-117) PREDICTED: 14-3-3-like protein GF14 iota-like [Vitis vinifera];; (*SWP) sp|Q9C5W6|14312_ARATH (e_value=2e-112) 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1;; (*TAIR) AT1G26480.1 (e_value=2e-113) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc05g012420.2.1 (e_value=1e-128) genomic_reference:SL2.40ch05 gene_region:5666263-5669472 transcript_region:SL2.40ch05:5666263..5669472- go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00024730g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|0|0.33|3|0|116; (*GB) gi|77416981|gb|ABA81886.1| (e_value=3e-64) unknown [Solanum tuberosum];; (*SWP) sp|Q6AY85|ALG14_RAT (e_value=4e-28) UDP-N-acetylglucosamine transferase subunit ALG14 homolog OS=Rattus norvegicus GN=Alg14 PE=2 SV=1;; (*TAIR) AT4G18230.1 (e_value=1e-61) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | chr4:10080521-10081710 REVERSE LENGTH=233;; (*ITAG) Solyc03g005800.2.1 (e_value=2e-66) genomic_reference:SL2.40ch03 gene_region:548122-550898 transcript_region:SL2.40ch03:548122..550898+ go_terms:GO:0043495,GO:0004577 functional_description:"UDP-N-acetylglucosamine transferase subunit ALG14 (AHRD V1 ***- B6U4N4_MAIZE); contains Interpro domain(s) IPR013969 Oligosaccharide biosynthesis protein Alg14 like "; GO:0043495,GO:0004577 NbS00024730g0011.1 protein AED:0.13 eAED:0.13 QI:148|1|1|1|1|1|6|385|616; (*GB) gi|359472534|ref|XP_002274321.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FZD1|PPR58_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1 SV=1;; (*TAIR) AT1G26460.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9151816-9154407 FORWARD LENGTH=630;; (*ITAG) Solyc05g012390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5649249-5653665 transcript_region:SL2.40ch05:5649249..5653665+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KQQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024730g0014.1 protein AED:0.31 eAED:0.31 QI:217|0.75|1|1|0.5|0.6|5|221|148; (*GB) gi|224101441|ref|XP_002312281.1| (e_value=5e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT1G26470.1 (e_value=3e-40) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133;; (*ITAG) Solyc05g012400.2.1 (e_value=2e-55) genomic_reference:SL2.40ch05 gene_region:5654506-5656999 transcript_region:SL2.40ch05:5654506..5656999+ go_terms:GO:0043189 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012423 CT20 "; GO:0043189 NbS00009147g0002.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|1|1|4|0|282; (*GB) gi|255561669|ref|XP_002521844.1| (e_value=1e-134) Peroxidase 10 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FX85|PER10_ARATH (e_value=1e-115) Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1;; (*TAIR) AT1G49570.1 (e_value=8e-117) | Symbols: | Peroxidase superfamily protein | chr1:18347077-18348712 FORWARD LENGTH=350;; (*ITAG) Solyc01g108320.2.1 (e_value=2e-173) genomic_reference:SL2.40ch01 gene_region:87434515-87436047 transcript_region:SL2.40ch01:87434515..87436047+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00009147g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|255561671|ref|XP_002521845.1| (e_value=6e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g108330.2.1 (e_value=9e-41) genomic_reference:SL2.40ch01 gene_region:87440624-87441428 transcript_region:SL2.40ch01:87440624..87441428+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020782g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|255572634|ref|XP_002527250.1| (e_value=1e-82) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07350.1 (e_value=3e-70) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g007580.1.1 (e_value=2e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1578789-1579688 transcript_region:SL2.40ch06:1578789..1579688+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00003123g0011.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|4|0|434; (*GB) gi|359491342|ref|XP_002272638.2| (e_value=0.0) PREDICTED: probable pectate lyase P59-like [Vitis vinifera];; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=5e-169) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc03g113150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57462325-57464654 transcript_region:SL2.40ch03:57462325..57464654+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LQ55_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00003123g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.4|1|0.75|0.8|5|0|269; (*GB) gi|147842466|emb|CAN63139.1| (e_value=2e-77) hypothetical protein VITISV_034572 [Vitis vinifera];; (*SWP) sp|Q556I2|AEDO_DICDI (e_value=2e-17) Probable 2-aminoethanethiol dioxygenase OS=Dictyostelium discoideum GN=ado-1 PE=3 SV=2;; (*TAIR) AT5G39890.1 (e_value=4e-75) | Symbols: | Protein of unknown function (DUF1637) | chr5:15974543-15976013 FORWARD LENGTH=276;; (*ITAG) Solyc03g113130.2.1 (e_value=8e-120) genomic_reference:SL2.40ch03 gene_region:57451754-57455129 transcript_region:SL2.40ch03:57451754..57455129- go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- Q2HVC5_MEDTR); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00003123g0010.1 protein AED:0.14 eAED:0.14 QI:741|1|1|1|1|1|5|189|257; (*GB) gi|297734015|emb|CBI15262.3| (e_value=5e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LGU7|RNZN_ARATH (e_value=3e-120) Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3;; (*TAIR) AT1G74700.1 (e_value=2e-121) | Symbols: NUZ, TRZ1 | tRNAse Z1 | chr1:28065345-28067130 FORWARD LENGTH=280;; (*ITAG) Solyc03g113140.2.1 (e_value=7e-176) genomic_reference:SL2.40ch03 gene_region:57457112-57460414 transcript_region:SL2.40ch03:57457112..57460414- go_terms:GO:0042781 functional_description:"Ribonuclease Z family protein (AHRD V1 ***- D0LN77_HALO1)"; GO:0042781 NbS00008342g0006.1 protein AED:0.08 eAED:0.08 QI:178|1|1|1|1|0.8|5|214|663; (*GB) gi|297738123|emb|CBI27324.3| (e_value=1e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69060.1 (e_value=9e-47) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:25965055-25967273 FORWARD LENGTH=630;; (*ITAG) Solyc05g011930.2.1 (e_value=1e-122) genomic_reference:SL2.40ch05 gene_region:5158846-5169814 transcript_region:SL2.40ch05:5158846..5169814+ go_terms:GO:0031072 functional_description:"Heat shock protein binding protein (AHRD V1 *--- D7KWX9_ARALY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00008342g0007.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0.5|0.33|3|0|181; (*GB) gi|71726946|gb|AAZ39644.1| (e_value=2e-38) cytochrome P450 monooxygenase [Petunia x hybrida];; (*TAIR) AT2G26710.1 (e_value=2e-12) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc05g011940.2.1 (e_value=1e-30) genomic_reference:SL2.40ch05 gene_region:5169868-5171876 transcript_region:SL2.40ch05:5169868..5171876- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00017182g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|91; (*GB) gi|156122742|gb|ABU50328.1| (e_value=3e-16) diacylglycerol acyltransferase [Helianthus annuus];; (*SWP) sp|Q9ASU1|DGAT2_ARATH (e_value=6e-13) Diacylglycerol O-acyltransferase 2 OS=Arabidopsis thaliana GN=DGAT2 PE=2 SV=1;; (*TAIR) AT3G51520.1 (e_value=4e-14) | Symbols: | diacylglycerol acyltransferase family | chr3:19110739-19112518 FORWARD LENGTH=314;; (*ITAG) Solyc02g068240.2.1 (e_value=4e-17) genomic_reference:SL2.40ch02 gene_region:32811139-32816106 transcript_region:SL2.40ch02:32811139..32816106- go_terms:GO:0004144 functional_description:"Diacylglycerol acyltransferase family (AHRD V1 **** D7LTV7_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0004144 NbS00017182g0121.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|0.66|0.5|0.66|3|0|342 NbS00017182g0125.1 protein AED:0.16 eAED:0.16 QI:205|0.88|0.88|1|0.61|0.66|27|258|953 NbS00017182g0103.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|1|1|2|0|451 NbS00017182g0101.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|301 NbS00017182g0127.1 protein AED:0.23 eAED:0.24 QI:179|0.81|0.82|0.94|0.81|0.82|17|0|455 NbS00017182g0124.1 protein AED:0.31 eAED:0.41 QI:271|0.33|0.42|0.85|0.33|0.14|7|358|303 NbS00017178g0003.1 protein AED:0.07 eAED:0.32 QI:0|0|0|1|0|0|2|0|133; (*ITAG) Solyc12g062880.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00032834g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.33|3|0|786; (*GB) gi|126143476|dbj|BAF47277.1| (e_value=0.0) lectin-receptor like protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=1e-172) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G04960.1 (e_value=1e-173) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:2533096-2535156 FORWARD LENGTH=686;; (*ITAG) Solyc02g078170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00032834g0003.1 protein AED:0.23 eAED:0.84 QI:0|0|0.5|1|0|0.5|2|67|151 NbS00057365g0007.1 protein AED:0.36 eAED:0.37 QI:0|1|0|1|0|1|2|0|542; (*GB) gi|75269065|sp|Q53HY2.1|NINJA_TOBAC (e_value=0.0) RecName: Full=Ninja-family protein mc410;; (*SWP) sp|Q53HY2|NINJA_TOBAC (e_value=0.0) Ninja-family protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1;; (*TAIR) AT4G28910.3 (e_value=4e-78) | Symbols: NINJA | novel interactor of JAZ | chr4:14264330-14265680 REVERSE LENGTH=425;; (*ITAG) Solyc05g018320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20438192-20445823 transcript_region:SL2.40ch05:20438192..20445823- go_terms:GO:0005515,GO:0016564 functional_description:"Ninja-family protein Os05g0558800 (AHRD V1 ***- NNJA4_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515,GO:0016564 NbS00057365g0003.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|75 NbS00006409g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|1|1|3|176|550; (*GB) gi|359484991|ref|XP_002270183.2| (e_value=0.0) PREDICTED: sodium transporter HKT1-like [Vitis vinifera];; (*SWP) sp|Q6H501|HKT6_ORYSJ (e_value=2e-119) Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1;; (*TAIR) AT4G10310.1 (e_value=2e-109) | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6392008-6395667 FORWARD LENGTH=506;; (*ITAG) Solyc07g014690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5103988-5106992 transcript_region:SL2.40ch07:5103988..5106992+ go_terms:GO:0015081 functional_description:"Potassium transporter (AHRD V1 **** A0MNZ1_THEHA); contains Interpro domain(s) IPR003445 Cation transporter "; GO:0015081 NbS00006409g0101.1 protein AED:0.37 eAED:0.37 QI:632|1|0.8|1|0.75|0.6|5|0|182 NbS00006409g0107.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.5|1|0|2|0|166 NbS00006409g0106.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|0|0|2|0|128 NbS00009909g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|519; (*GB) gi|147777018|emb|CAN70074.1| (e_value=0.0) hypothetical protein VITISV_028565 [Vitis vinifera];; (*SWP) sp|O65012|C78A4_PINRA (e_value=4e-157) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT1G13710.1 (e_value=7e-169) | Symbols: CYP78A5, KLU | cytochrome P450, family 78, subfamily A, polypeptide 5 | chr1:4702932-4704592 REVERSE LENGTH=517;; (*ITAG) Solyc05g015350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10425776-10430016 transcript_region:SL2.40ch05:10425776..10430016+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009909g0012.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0|0|2|0|221; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-56) hypothetical protein [Nicotiana tabacum]; NbS00010979g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.95|1|1|1|1|22|194|1448; (*GB) gi|225437885|ref|XP_002265367.1| (e_value=0.0) PREDICTED: CLIP-associating protein-like [Vitis vinifera];; (*SWP) sp|A1A5G0|CLAP1_XENTR (e_value=1e-45) CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1;; (*TAIR) AT2G20190.1 (e_value=0.0) | Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439;; (*ITAG) Solyc09g063030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56576631-56592238 transcript_region:SL2.40ch09:56576631..56592238- go_terms:GO:0005488 functional_description:"CLIP-associating protein 1-like (AHRD V1 *--- Q6KAI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00014688g0002.1 protein AED:0.02 eAED:0.02 QI:91|1|1|1|0|0|3|119|196; (*GB) gi|225440948|ref|XP_002283113.1| (e_value=2e-72) PREDICTED: GDSL esterase/lipase At5g03610 [Vitis vinifera];; (*SWP) sp|Q9LZS7|GDL71_ARATH (e_value=1e-59) GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1;; (*TAIR) AT5G03610.1 (e_value=7e-61) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359;; (*ITAG) Solyc09g009700.2.1 (e_value=3e-100) genomic_reference:SL2.40ch09 gene_region:3088430-3096264 transcript_region:SL2.40ch09:3088430..3096264+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g03610 (AHRD V1 **** GDL71_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00023991g0002.1 protein AED:0.07 eAED:0.07 QI:285|1|1|1|1|1|2|216|189; (*GB) gi|224071607|ref|XP_002303538.1| (e_value=6e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27830.1 (e_value=3e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc08g079600.2.1 (e_value=1e-69) genomic_reference:SL2.40ch08 gene_region:60265217-60266636 transcript_region:SL2.40ch08:60265217..60266636+ functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 **-- Q0E1G8_ORYSJ)"; NbS00041675g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|745; (*GB) gi|169674674|gb|ACA64703.1| (e_value=0.0) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-152) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=8e-158) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74480717-74483824 transcript_region:SL2.40ch01:74480717..74483824+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00041675g0002.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|169674676|gb|ACA64704.1| (e_value=2e-40) subtilase [Nicotiana tabacum];; (*TAIR) AT2G05920.1 (e_value=1e-12) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc01g087820.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:74463598-74466208 transcript_region:SL2.40ch01:74463598..74466208+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00052472g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|153; (*ITAG) Solyc04g074620.1.1 (e_value=1e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00057380g0002.1 protein AED:0.13 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|356552234|ref|XP_003544474.1| (e_value=4e-118) PREDICTED: uncharacterized protein LOC100788692 [Glycine max];; (*TAIR) AT2G05230.1 (e_value=7e-92) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc05g040050.1.1 (e_value=3e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00011687g0014.1 protein AED:0.28 eAED:0.28 QI:151|1|1|1|0.65|0.71|21|299|584; (*GB) gi|359493861|ref|XP_003634682.1| (e_value=0.0) PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q5ZLN0|LRC40_CHICK (e_value=3e-60) Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1;; (*TAIR) AT3G15410.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:5203380-5207279 FORWARD LENGTH=584;; (*ITAG) Solyc10g006930.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1360016-1371881 transcript_region:SL2.40ch10:1360016..1371881- go_terms:GO:0008022,GO:0019903 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0008022,GO:0019903 NbS00011687g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|462; (*GB) gi|297844474|ref|XP_002890118.1| (e_value=2e-18) hypothetical protein ARALYDRAFT_471762 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q1PE57|FBK87_ARATH (e_value=6e-16) Putative F-box/kelch-repeat protein At4g22430 OS=Arabidopsis thaliana GN=At4g22430 PE=2 SV=1;; (*TAIR) AT4G22430.1 (e_value=4e-17) | Symbols: | F-box family protein | chr4:11827622-11828905 FORWARD LENGTH=427; NbS00000599g0012.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0.66|3|0|163; (*GB) gi|357473671|ref|XP_003607120.1| (e_value=5e-57) Auxin-induced protein-like protein [Medicago truncatula];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-31) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=1e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g111010.2.1 (e_value=7e-79) genomic_reference:SL2.40ch01 gene_region:89184158-89188515 transcript_region:SL2.40ch01:89184158..89188515+ go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 *-*- Q40266_MESCR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0016020 NbS00000599g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=6e-45) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=3e-35) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=2e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110920.2.1 (e_value=4e-54) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00000599g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|20149046|gb|AAM12778.1| (e_value=3e-47) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=2e-33) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=5e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110940.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:89164789-89165620 transcript_region:SL2.40ch01:89164789..89165620+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00000599g0007.1 protein AED:0.46 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|20149046|gb|AAM12778.1| (e_value=1e-39) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=1e-31) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=6e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110940.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:89164789-89165620 transcript_region:SL2.40ch01:89164789..89165620+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00000599g0011.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|152; (*GB) gi|225427810|ref|XP_002270504.1| (e_value=3e-58) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=7e-22) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G75580.1 (e_value=1e-54) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28377530-28377856 FORWARD LENGTH=108;; (*ITAG) Solyc01g110570.2.1 (e_value=9e-63) genomic_reference:SL2.40ch01 gene_region:88986574-88987218 transcript_region:SL2.40ch01:88986574..88987218- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00039557g0003.1 protein AED:0.06 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|207; (*GB) gi|225426130|ref|XP_002272759.1| (e_value=3e-58) PREDICTED: protein LURP-one-related 17 [Vitis vinifera];; (*SWP) sp|A0MFL4|LOR17_ARATH (e_value=7e-37) Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2;; (*TAIR) AT5G41590.1 (e_value=5e-38) | Symbols: | Protein of unknown function (DUF567) | chr5:16632221-16633896 REVERSE LENGTH=221;; (*ITAG) Solyc08g081680.1.1 (e_value=5e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61814047-61815302 transcript_region:SL2.40ch08:61814047..61815302- functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00059408g0006.1 protein AED:0.26 eAED:0.26 QI:362|0.72|0.58|1|0.72|0.75|12|0|299; (*GB) gi|192910838|gb|ACF06527.1| (e_value=1e-128) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|Q8H5X5|SCAM1_ORYSJ (e_value=3e-124) Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=1e-113) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc12g010750.1.1 (e_value=1e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3670660-3675334 transcript_region:SL2.40ch12:3670660..3675334+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00008526g0006.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|81; (*GB) gi|116242308|gb|ABJ89813.1| (e_value=3e-51) wound-induced protein kinase [Nicotiana attenuata];; (*SWP) sp|Q39023|MPK3_ARATH (e_value=1e-46) Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2;; (*TAIR) AT3G45640.1 (e_value=1e-47) | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activated protein kinase 3 | chr3:16756918-16758476 FORWARD LENGTH=370;; (*ITAG) Solyc06g005170.2.1 (e_value=8e-53) genomic_reference:SL2.40ch06 gene_region:192235-195321 transcript_region:SL2.40ch06:192235..195321+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00035030g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|457; (*GB) gi|17402471|emb|CAD13178.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00035030g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|120; (*GB) gi|57014007|ref|YP_173478.1| (e_value=1e-17) hypothetical protein NitaMp141 [Nicotiana tabacum];; (*ITAG) Solyc07g017930.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00035030g0002.1 protein AED:0.28 eAED:0.28 QI:275|0.85|0.87|1|0.85|0.87|8|338|251; (*GB) gi|359475282|ref|XP_003631634.1| (e_value=7e-86) PREDICTED: nogo-B receptor-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q96E22|NGBR_HUMAN (e_value=2e-12) Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=2 SV=1;; (*TAIR) AT1G11755.1 (e_value=6e-62) | Symbols: LEW1 | Undecaprenyl pyrophosphate synthetase family protein | chr1:3969987-3971488 REVERSE LENGTH=254;; (*ITAG) Solyc06g060810.2.1 (e_value=1e-111) genomic_reference:SL2.40ch06 gene_region:35229657-35235002 transcript_region:SL2.40ch06:35229657..35235002- go_terms:GO:0045547 functional_description:"Nogo-B receptor (AHRD V1 **-- B5X0Q7_SALSA); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00037381g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.61|0.5|0.78|0.92|0.92|14|0|1275; (*GB) gi|359476049|ref|XP_002281624.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitis vinifera];; (*SWP) sp|O75417|DPOLQ_HUMAN (e_value=2e-146) DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2;; (*TAIR) AT4G32700.2 (e_value=0.0) | Symbols: | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154;; (*ITAG) Solyc08g068120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54406897-54423148 transcript_region:SL2.40ch08:54406897..54423148+ go_terms:GO:0005524,GO:0006260 functional_description:"DNA polymerase I family protein expressed (AHRD V1 ***- Q2QTK2_ORYSJ); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0005524,GO:0006260 NbS00055650g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|587; (*GB) gi|359490408|ref|XP_002267761.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=5e-148) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=3e-149) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc06g035600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21351566-21354557 transcript_region:SL2.40ch06:21351566..21354557+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KL14_ARALY); contains Interpro domain(s) IPR008991 Translation protein SH3-like "; GO:0004519,GO:0034046 NbS00055650g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.83|0.57|1|0.5|0.57|7|2717|366; (*GB) gi|225469314|ref|XP_002269936.1| (e_value=0.0) PREDICTED: L-idonate 5-dehydrogenase [Vitis vinifera];; (*SWP) sp|Q1PSI9|IDND_VITVI (e_value=0.0) L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2;; (*TAIR) AT5G51970.2 (e_value=2e-168) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:21111820-21113284 FORWARD LENGTH=364;; (*ITAG) Solyc01g006510.2.1 (e_value=5e-172) genomic_reference:SL2.40ch01 gene_region:1093865-1098227 transcript_region:SL2.40ch01:1093865..1098227+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"L-threonine 3-dehydrogenase (AHRD V1 ***- TDH_ANADF); contains Interpro domain(s) IPR002328 Alcohol dehydrogenase, zinc-containing, conserved site "; GO:0008152,GO:0016491,GO:0055114 NbS00029467g0004.1 protein AED:0.06 eAED:0.06 QI:277|0.84|0.85|0.92|0.76|0.92|14|277|442; (*GB) gi|350539429|ref|NP_001234393.1| (e_value=0.0) tousled-like protein [Solanum lycopersicum];; (*SWP) sp|Q39238|TSL_ARATH (e_value=0.0) Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana GN=TOUSLED PE=1 SV=1;; (*TAIR) AT5G20930.1 (e_value=0.0) | Symbols: TSL | Protein kinase superfamily protein | chr5:7098213-7102970 FORWARD LENGTH=688;; (*ITAG) Solyc11g071680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52162376-52174213 transcript_region:SL2.40ch11:52162376..52174213- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D0LX30_HALO1); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00029601g0008.1 protein AED:0.19 eAED:0.19 QI:24|0.71|0.75|0.87|0.28|0.25|8|501|260; (*GB) gi|255551707|ref|XP_002516899.1| (e_value=5e-46) Cullin-1, putative [Ricinus communis];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=3e-45) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=2e-46) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc01g099290.2.1 (e_value=8e-145) genomic_reference:SL2.40ch01 gene_region:81330375-81336214 transcript_region:SL2.40ch01:81330375..81336214- go_terms:GO:0031461 functional_description:"Cullin-like protein1 (AHRD V1 ***- Q8LP18_PEA); contains Interpro domain(s) IPR016159 Cullin repeat-like "; GO:0031461 NbS00029601g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.94|0.89|1|0.77|0.78|19|285|676; (*GB) gi|225456973|ref|XP_002278685.1| (e_value=0.0) PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=5e-63) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT1G19100.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663;; (*ITAG) Solyc01g099300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81337554-81359465 transcript_region:SL2.40ch01:81337554..81359465- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00042674g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0.83|1|0.6|0.83|6|447|667; (*GB) gi|225428965|ref|XP_002263972.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242868 [Vitis vinifera];; (*TAIR) AT1G49890.1 (e_value=8e-157) | Symbols: QWRF2 | Family of unknown function (DUF566) | chr1:18470282-18473463 FORWARD LENGTH=659;; (*ITAG) Solyc01g107200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86584568-86595138 transcript_region:SL2.40ch01:86584568..86595138- go_terms:GO:0006139 functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; GO:0006139 NbC24309810g0001.1 protein AED:0.29 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|58979188|gb|AAW83328.1| (e_value=2e-62) mitochondrial prohibitin 1 [Petunia x hybrida];; (*SWP) sp|Q9BKU4|PHB1_CAEEL (e_value=2e-41) Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans GN=phb-1 PE=1 SV=1;; (*TAIR) AT5G40770.1 (e_value=7e-60) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc11g013260.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6170897-6173581 transcript_region:SL2.40ch11:6170897..6173581+ go_terms:GO:0005515 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0005515 NbS00007946g0002.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|122 NbS00011943g0001.1 protein AED:0.20 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|255588003|ref|XP_002534470.1| (e_value=5e-69) transcription initiation factor iib, putative [Ricinus communis];; (*SWP) sp|Q9SS44|TF2B2_ARATH (e_value=5e-69) Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=4e-70) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079360.1.1 (e_value=8e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60231370-60236467 transcript_region:SL2.40ch10:60231370..60236467- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbS00027726g0005.1 protein AED:0.25 eAED:0.26 QI:0|0.76|0.64|1|0.61|0.57|14|466|647; (*GB) gi|359477163|ref|XP_002271327.2| (e_value=0.0) PREDICTED: WD repeat-containing protein 43-like [Vitis vinifera];; (*TAIR) AT5G11240.1 (e_value=9e-176) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615;; (*ITAG) Solyc02g030080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00026798g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|117; (*ITAG) Solyc01g079270.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70870283-70870666 transcript_region:SL2.40ch01:70870283..70870666- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00026798g0004.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.5|1|0|2|0|176 NbS00026798g0005.1 protein AED:0.40 eAED:0.65 QI:67|0|0|1|0|0|3|0|71; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-16) hypothetical protein [Nicotiana tabacum]; NbS00017483g0006.1 protein AED:0.01 eAED:0.01 QI:147|1|1|1|1|1|2|210|317; (*GB) gi|224133542|ref|XP_002321600.1| (e_value=9e-100) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9FM03|DOF56_ARATH (e_value=9e-41) Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2;; (*TAIR) AT5G62940.1 (e_value=7e-42) | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding family protein | chr5:25257183-25258504 REVERSE LENGTH=372;; (*ITAG) Solyc03g112930.2.1 (e_value=1e-90) genomic_reference:SL2.40ch03 gene_region:57274932-57277016 transcript_region:SL2.40ch03:57274932..57277016- go_terms:GO:0045449 functional_description:"Dof zinc finger protein-like (AHRD V1 ***- Q0WPR9_ARATH); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00005227g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|481; (*GB) gi|209954709|dbj|BAG80545.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9ZVY5|U75B2_ARATH (e_value=3e-124) UDP-glycosyltransferase 75B2 OS=Arabidopsis thaliana GN=UGT75B2 PE=2 SV=1;; (*TAIR) AT1G05530.1 (e_value=2e-125) | Symbols: UGT75B2, UGT2 | UDP-glucosyl transferase 75B2 | chr1:1636496-1637863 REVERSE LENGTH=455;; (*ITAG) Solyc09g092480.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:66909051-66910457 transcript_region:SL2.40ch09:66909051..66910457+ go_terms:GO:0080018 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080018 NbS00005227g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|1805359|dbj|BAA19155.1| (e_value=0.0) glucosyl transferase [Nicotiana tabacum];; (*SWP) sp|Q0WW21|U75C1_ARATH (e_value=4e-121) UDP-glycosyltransferase 75C1 OS=Arabidopsis thaliana GN=UGT75C1 PE=2 SV=2;; (*TAIR) AT4G14090.1 (e_value=3e-122) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:8122434-8123804 REVERSE LENGTH=456;; (*ITAG) Solyc09g092480.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:66909051-66910457 transcript_region:SL2.40ch09:66909051..66910457+ go_terms:GO:0080018 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080018 NbS00005227g0006.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.33|1|1|3|0|152 NbS00030188g0001.1 protein AED:0.08 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|224072212|ref|XP_002303655.1| (e_value=5e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=2e-57) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT2G05260.2 (e_value=2e-63) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1918730-1919792 FORWARD LENGTH=294;; (*ITAG) Solyc08g082450.2.1 (e_value=1e-99) genomic_reference:SL2.40ch08 gene_region:62421383-62426129 transcript_region:SL2.40ch08:62421383..62426129+ go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7LYU5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00030188g0027.1 protein AED:0.25 eAED:0.25 QI:0|0|0.25|1|0|0.25|4|0|271; (*GB) gi|357502263|ref|XP_003621420.1| (e_value=2e-80) Expansin [Medicago truncatula];; (*SWP) sp|Q9FL79|EXP23_ARATH (e_value=5e-75) Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=3;; (*TAIR) AT5G39280.1 (e_value=6e-76) | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17, EXPA23 | expansin A23 | chr5:15730713-15731706 REVERSE LENGTH=259;; (*ITAG) Solyc03g115310.1.1 (e_value=3e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59126449-59127342 transcript_region:SL2.40ch03:59126449..59127342- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- B7TYQ2_9GENT); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00030188g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|4|0|247; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g011540.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030188g0022.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|261; (*GB) gi|296082225|emb|CBI21230.3| (e_value=2e-119) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FL79|EXP23_ARATH (e_value=3e-112) Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=3;; (*TAIR) AT5G39280.1 (e_value=2e-113) | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17, EXPA23 | expansin A23 | chr5:15730713-15731706 REVERSE LENGTH=259;; (*ITAG) Solyc03g115270.1.1 (e_value=2e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59114292-59115725 transcript_region:SL2.40ch03:59114292..59115725- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- B7TYQ2_9GENT); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00030188g0024.1 protein AED:0.06 eAED:0.06 QI:88|1|1|1|1|1|2|340|130; (*ITAG) Solyc03g115330.1.1 (e_value=5e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59134442-59135382 transcript_region:SL2.40ch03:59134442..59135382+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030188g0030.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|480; (*GB) gi|225457255|ref|XP_002281128.1| (e_value=1e-147) PREDICTED: UDP-glycosyltransferase 83A1 [Vitis vinifera];; (*SWP) sp|Q9SGA8|U83A1_ARATH (e_value=5e-93) UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana GN=UGT83A1 PE=2 SV=1;; (*TAIR) AT3G02100.1 (e_value=4e-94) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464;; (*ITAG) Solyc02g088750.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45304319-45306589 transcript_region:SL2.40ch02:45304319..45306589- go_terms:GO:0008194 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **** Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008194 NbS00030188g0028.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|296082225|emb|CBI21230.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FL77|EXP25_ARATH (e_value=6e-59) Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2;; (*TAIR) AT5G39300.1 (e_value=4e-60) | Symbols: ATEXPA25, EXP25, ATEXP25, ATHEXP ALPHA 1.18, EXPA25 | expansin A25 | chr5:15737427-15738387 REVERSE LENGTH=260;; (*ITAG) Solyc03g115310.1.1 (e_value=1e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59126449-59127342 transcript_region:SL2.40ch03:59126449..59127342- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- B7TYQ2_9GENT); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00030188g0026.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|0|0|4|0|179; (*GB) gi|224115762|ref|XP_002317118.1| (e_value=4e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=5e-16) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G15410.1 (e_value=4e-17) | Symbols: PUX5 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma | chr4:8814868-8816596 FORWARD LENGTH=421;; (*ITAG) Solyc02g081140.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00030188g0025.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|0|0|2|0|68; (*GB) gi|224118108|ref|XP_002331560.1| (e_value=8e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT4G22150.1 (e_value=2e-14) | Symbols: PUX3 | plant UBX domain-containing protein 3 | chr4:11731272-11732800 REVERSE LENGTH=367;; (*ITAG) Solyc02g081140.2.1 (e_value=4e-16) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00026974g0007.1 protein AED:0.26 eAED:0.26 QI:284|1|0.8|1|0.75|0.8|5|0|300; (*GB) gi|224138376|ref|XP_002326587.1| (e_value=7e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT4G19140.1 (e_value=9e-73) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469830-10471275 FORWARD LENGTH=303;; (*ITAG) Solyc08g075770.2.1 (e_value=8e-144) genomic_reference:SL2.40ch08 gene_region:57049670-57059466 transcript_region:SL2.40ch08:57049670..57059466- functional_description:"Unknown Protein (AHRD V1)"; NbS00014554g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.77|0.5|1|0.88|0.9|10|0|662; (*GB) gi|225448517|ref|XP_002273218.1| (e_value=2e-165) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Vitis vinifera];; (*SWP) sp|Q9SIZ4|Y2027_ARATH (e_value=2e-133) Inactive receptor-like serine/threonine-protein kinase At2g40270 OS=Arabidopsis thaliana GN=At2g40270 PE=1 SV=2;; (*TAIR) AT2G40270.2 (e_value=1e-134) | Symbols: | Protein kinase family protein | chr2:16822136-16824327 REVERSE LENGTH=482;; (*ITAG) Solyc06g051030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30621752-30627124 transcript_region:SL2.40ch06:30621752..30627124+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00040464g0006.1 protein AED:0.02 eAED:0.02 QI:199|1|1|1|1|1|4|289|203; (*GB) gi|255587934|ref|XP_002534445.1| (e_value=8e-115) Minor allergen Alt a, putative [Ricinus communis];; (*SWP) sp|B9M4V3|WRBA_GEOSF (e_value=1e-50) Flavoprotein WrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G27270.1 (e_value=2e-115) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=4e-119) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00040464g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|56542451|gb|AAV92890.1| (e_value=1e-58) Avr9/Cf-9 rapidly elicited protein 20, partial [Nicotiana tabacum];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=1e-34) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=2e-37) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc10g006660.2.1 (e_value=1e-57) genomic_reference:SL2.40ch10 gene_region:1164164-1165705 transcript_region:SL2.40ch10:1164164..1165705- go_terms:GO:0005200 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-- D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005200 NbS00040464g0008.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|0|0|3|0|111; (*GB) gi|56542451|gb|AAV92890.1| (e_value=3e-46) Avr9/Cf-9 rapidly elicited protein 20, partial [Nicotiana tabacum];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=2e-29) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=1e-33) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc10g006660.2.1 (e_value=1e-50) genomic_reference:SL2.40ch10 gene_region:1164164-1165705 transcript_region:SL2.40ch10:1164164..1165705- go_terms:GO:0005200 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-- D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005200 NbS00012336g0002.1 protein AED:0.37 eAED:0.40 QI:140|0.5|0.66|1|0|0|3|0|85; (*GB) gi|302144090|emb|CBI23195.3| (e_value=6e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G04330.1 (e_value=2e-15) | Symbols: | Chaperonin-like RbcX protein | chr4:2116700-2118563 REVERSE LENGTH=174; NbS00052164g0012.1 protein AED:0.08 eAED:0.08 QI:43|1|1|1|1|1|5|794|645; (*GB) gi|15144507|gb|AAK84474.1| (e_value=0.0) suppressor-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LSM5|SGT1_ARATH (e_value=0.0) Protein SGT1 homolog At5g65490 OS=Arabidopsis thaliana GN=At5g65490 PE=2 SV=1;; (*TAIR) AT5G65490.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26178003-26180309 REVERSE LENGTH=643;; (*ITAG) Solyc11g010660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3707451-3711230 transcript_region:SL2.40ch11:3707451..3711230- functional_description:"SGT1 protein (AHRD V1 ***- D3B137_POLPA); contains Interpro domain(s) IPR010770 SGT1 "; NbS00052164g0013.1 protein AED:0.21 eAED:0.21 QI:155|1|1|1|0.75|0.6|5|453|174; (*GB) gi|15144508|gb|AAK84475.1| (e_value=2e-95) unknown [Solanum lycopersicum];; (*TAIR) AT2G22570.1 (e_value=8e-70) | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9589604-9590846 REVERSE LENGTH=244;; (*ITAG) Solyc11g010650.2.1 (e_value=9e-98) genomic_reference:SL2.40ch11 gene_region:3704467-3706636 transcript_region:SL2.40ch11:3704467..3706636- go_terms:GO:0008936 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00052164g0014.1 protein AED:0.17 eAED:0.19 QI:59|0.2|0.16|0.83|0.2|0.16|6|0|1114; (*GB) gi|15144509|gb|AAK84476.1| (e_value=0.0) unknown [Solanum lycopersicum];; (*TAIR) AT5G10500.1 (e_value=0.0) | Symbols: | Kinase interacting (KIP1-like) family protein | chr5:3305418-3308039 FORWARD LENGTH=848;; (*ITAG) Solyc11g010630.2.1 (e_value=0.0) genomic_reference:SL2.40ch11 gene_region:3691539-3704230 transcript_region:SL2.40ch11:3691539..3704230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015514g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.85|1|0.83|0.71|7|2540|162; (*GB) gi|255574994|ref|XP_002528403.1| (e_value=2e-68) serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|P55748|CBP22_HORVU (e_value=4e-61) Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1;; (*TAIR) AT4G30810.1 (e_value=2e-58) | Symbols: scpl29 | serine carboxypeptidase-like 29 | chr4:15003474-15006017 FORWARD LENGTH=479;; (*ITAG) Solyc07g005960.2.1 (e_value=5e-90) genomic_reference:SL2.40ch07 gene_region:793300-799520 transcript_region:SL2.40ch07:793300..799520- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TM29_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00015514g0002.1 protein AED:0.44 eAED:0.47 QI:255|0.5|0.66|1|1|1|3|0|135; (*GB) gi|147835717|emb|CAN75200.1| (e_value=1e-49) hypothetical protein VITISV_014887 [Vitis vinifera];; (*SWP) sp|Q949Q7|SCP29_ARATH (e_value=4e-43) Serine carboxypeptidase-like 29 OS=Arabidopsis thaliana GN=SCPL29 PE=2 SV=1;; (*TAIR) AT4G30810.1 (e_value=3e-44) | Symbols: scpl29 | serine carboxypeptidase-like 29 | chr4:15003474-15006017 FORWARD LENGTH=479;; (*ITAG) Solyc07g005960.2.1 (e_value=6e-65) genomic_reference:SL2.40ch07 gene_region:793300-799520 transcript_region:SL2.40ch07:793300..799520- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TM29_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00011773g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|187; (*GB) gi|224108768|ref|XP_002314962.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGZ4|WRK48_ARATH (e_value=7e-30) Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1;; (*TAIR) AT5G49520.1 (e_value=5e-31) | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein 48 | chr5:20090890-20092867 FORWARD LENGTH=399;; (*ITAG) Solyc05g053380.2.1 (e_value=6e-37) genomic_reference:SL2.40ch05 gene_region:62631053-62633674 transcript_region:SL2.40ch05:62631053..62633674- go_terms:GO:0045449 functional_description:"WRKY transcription factor 31 (AHRD V1 *-*- C9DI20_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00008621g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|356521337|ref|XP_003529313.1| (e_value=1e-36) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430-like [Glycine max];; (*SWP) sp|Q3E9X6|CRK21_ARATH (e_value=2e-14) Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=2 SV=1;; (*TAIR) AT3G09010.1 (e_value=1e-22) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc03g006500.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:1082967-1089867 transcript_region:SL2.40ch03:1082967..1089867+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00008621g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.6|1|0.25|0.4|5|0|262; (*GB) gi|356548747|ref|XP_003542761.1| (e_value=2e-128) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like [Glycine max];; (*SWP) sp|C0LGG8|Y5343_ARATH (e_value=5e-82) Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1;; (*TAIR) AT3G09010.1 (e_value=5e-110) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc03g006500.2.1 (e_value=7e-170) genomic_reference:SL2.40ch03 gene_region:1082967-1089867 transcript_region:SL2.40ch03:1082967..1089867+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00043948g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|468; (*GB) gi|584866|sp|P37123.1|C77A1_SOLME (e_value=0.0) RecName: Full=Cytochrome P450 77A1; AltName: Full=CYPLXXVIIA1; AltName: Full=Cytochrome P-450EG6;; (*SWP) sp|P37123|C77A1_SOLME (e_value=0.0) Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1;; (*TAIR) AT5G04660.1 (e_value=0.0) | Symbols: CYP77A4 | cytochrome P450, family 77, subfamily A, polypeptide 4 | chr5:1336049-1337587 FORWARD LENGTH=512;; (*ITAG) Solyc11g007540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1793527-1795146 transcript_region:SL2.40ch11:1793527..1795146- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00024887g0006.1 protein AED:0.39 eAED:0.43 QI:0|0.5|0.66|1|0|0|3|252|65 NbS00024887g0009.1 protein AED:0.30 eAED:0.31 QI:31|0.66|0.8|1|0.66|0.7|10|121|369; (*GB) gi|225429638|ref|XP_002279687.1| (e_value=6e-147) PREDICTED: omega-amidase NIT2-like [Vitis vinifera];; (*SWP) sp|Q9NQR4|NIT2_HUMAN (e_value=3e-68) Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1;; (*TAIR) AT5G12040.1 (e_value=2e-142) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc08g062190.2.1 (e_value=3e-177) genomic_reference:SL2.40ch08 gene_region:47875449-47889419 transcript_region:SL2.40ch08:47875449..47889419- go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00033796g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|351; (*GB) gi|225438561|ref|XP_002276023.1| (e_value=9e-146) PREDICTED: F-box/kelch-repeat protein SKIP6-like [Vitis vinifera];; (*SWP) sp|Q9SJ04|SKIP6_ARATH (e_value=6e-117) F-box/kelch-repeat protein SKIP6 OS=Arabidopsis thaliana GN=SKIP6 PE=1 SV=1;; (*TAIR) AT2G21950.1 (e_value=5e-118) | Symbols: SKIP6 | SKP1 interacting partner 6 | chr2:9353526-9354644 REVERSE LENGTH=372;; (*ITAG) Solyc04g051870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50322948-50324021 transcript_region:SL2.40ch04:50322948..50324021- go_terms:GO:0004842 functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7M8L0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00007111g0013.1 protein AED:0.31 eAED:0.31 QI:222|0.91|0.84|1|0.58|0.61|13|0|489; (*GB) gi|225454688|ref|XP_002270494.1| (e_value=0.0) PREDICTED: GPCR-type G protein 1 [Vitis vinifera];; (*SWP) sp|Q0WQG8|GTG2_ARATH (e_value=0.0) GPCR-type G protein 2 OS=Arabidopsis thaliana GN=GTG2 PE=1 SV=2;; (*TAIR) AT4G27630.2 (e_value=0.0) | Symbols: GTG2 | GPCR-type G protein 2 | chr4:13791980-13797033 REVERSE LENGTH=467;; (*ITAG) Solyc07g045330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55749175-55760148 transcript_region:SL2.40ch07:55749175..55760148+ go_terms:GO:0051020 functional_description:"Golgi pH regulator (AHRD V1 **-- GPHR_CHICK); contains Interpro domain(s) IPR015672 G-protein coupled receptor 89-related "; GO:0051020 NbS00007111g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|225447504|ref|XP_002265343.1| (e_value=3e-24) PREDICTED: uncharacterized protein LOC100245903 isoform 2 [Vitis vinifera];; (*TAIR) AT3G07680.1 (e_value=5e-22) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g006090.1.1 (e_value=5e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:660798-662711 transcript_region:SL2.40ch12:660798..662711- go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00007111g0009.1 protein AED:0.39 eAED:0.65 QI:0|0|0|1|1|1|2|0|64; (*ITAG) Solyc12g006090.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:660798-662711 transcript_region:SL2.40ch12:660798..662711- go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00007111g0015.1 protein AED:0.26 eAED:0.26 QI:149|0.93|0.93|1|0.6|0.56|16|379|419; (*GB) gi|53854350|gb|AAU95618.1| (e_value=0.0) cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum];; (*SWP) sp|Q8S4Y1|THIC1_ARATH (e_value=0.0) Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1;; (*TAIR) AT5G48230.2 (e_value=0.0) | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolase 2 | chr5:19552570-19555122 REVERSE LENGTH=403;; (*ITAG) Solyc07g045350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55772647-55779165 transcript_region:SL2.40ch07:55772647..55779165- go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase protein (AHRD V1 **** D3YN47_9ERIC); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00007111g0018.1 protein AED:0.35 eAED:0.35 QI:191|1|0.5|1|1|1|2|0|64; (*GB) gi|255582868|ref|XP_002532206.1| (e_value=2e-26) NOI, putative [Ricinus communis];; (*TAIR) AT2G04410.1 (e_value=3e-25) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73;; (*ITAG) Solyc07g045340.2.1 (e_value=4e-36) genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00003662g0017.1 protein AED:0.15 eAED:0.15 QI:503|0.88|0.84|1|0.83|0.78|19|0|751; (*GB) gi|296090356|emb|CBI40175.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NLV4|FY_ARATH (e_value=0.0) Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1;; (*TAIR) AT5G13480.1 (e_value=0.0) | Symbols: FY | Transducin/WD40 repeat-like superfamily protein | chr5:4326638-4331557 REVERSE LENGTH=647;; (*ITAG) Solyc08g067040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53153910-53170013 transcript_region:SL2.40ch08:53153910..53170013+ go_terms:GO:0005515 functional_description:"Polyadenylation factor subunit 2 (AHRD V1 *--- D6RKS9_COPC7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00003662g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|2471|218; (*GB) gi|359484651|ref|XP_002285023.2| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100267997 [Vitis vinifera];; (*TAIR) AT4G32440.1 (e_value=3e-23) | Symbols: | Plant Tudor-like RNA-binding protein | chr4:15657295-15658692 FORWARD LENGTH=377;; (*ITAG) Solyc05g055340.2.1 (e_value=3e-37) genomic_reference:SL2.40ch05 gene_region:64164751-64167415 transcript_region:SL2.40ch05:64164751..64167415+ functional_description:"Agenet domain-containing protein (AHRD V1 **-- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; NbS00003662g0019.1 protein AED:0.46 eAED:0.46 QI:165|0.5|0.33|0.66|0|0|3|0|135; (*GB) gi|296081997|emb|CBI21002.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G20030.1 (e_value=9e-38) | Symbols: | Plant Tudor-like RNA-binding protein | chr5:6764971-6766036 REVERSE LENGTH=326;; (*ITAG) Solyc11g007340.1.1 (e_value=5e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1716337-1718630 transcript_region:SL2.40ch11:1716337..1718630+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; GO:0003723 NbS00003662g0008.1 protein AED:0.66 eAED:0.67 QI:0|0|0|0.33|1|1|6|0|190 NbS00003662g0015.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.5|1|1|2|0|66 NbS00003662g0023.1 protein AED:0.16 eAED:0.16 QI:486|0.85|0.87|1|0.85|0.75|8|465|130; (*GB) gi|1172835|sp|P41918.1|RANA1_TOBAC (e_value=3e-79) RecName: Full=GTP-binding nuclear protein Ran-A1;; (*SWP) sp|P41918|RANA1_TOBAC (e_value=1e-80) GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1;; (*TAIR) AT5G55190.1 (e_value=1e-79) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221;; (*ITAG) Solyc01g104700.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:84871561-84875061 transcript_region:SL2.40ch01:84871561..84875061- go_terms:GO:0003924 functional_description:"GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR018210 GTP-binding nuclear protein, Ran, conserved site IPR002041 Ran GTPase "; GO:0003924 NbS00003662g0021.1 protein AED:0.24 eAED:0.34 QI:0|0|0|1|0|0|3|0|257; (*GB) gi|78102516|ref|YP_358657.1| (e_value=6e-112) ATP synthase CF1 alpha subunit [Nicotiana sylvestris];; (*SWP) sp|Q3C1H4|ATPA_NICSY (e_value=2e-113) ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=3e-108) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=7e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00004380g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|110293351|gb|ABG66307.1| (e_value=3e-123) CCR4 associated factor 1-related protein [Capsicum annuum];; (*SWP) sp|Q9FMS6|CAF1K_ARATH (e_value=3e-112) Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1;; (*TAIR) AT5G22250.1 (e_value=2e-113) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:7365605-7366441 REVERSE LENGTH=278;; (*ITAG) Solyc11g068770.1.1 (e_value=2e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50490577-50491434 transcript_region:SL2.40ch11:50490577..50491434+ go_terms:GO:0046872,GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0046872,GO:0000175 NbS00017240g0003.1 protein AED:0.19 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|125 NbS00007252g0008.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.9|1|0.88|0.9|10|0|433; (*GB) gi|350537931|ref|NP_001234318.1| (e_value=0.0) root-specific metal transporter [Solanum lycopersicum];; (*SWP) sp|Q8H4H5|NRAM5_ORYSJ (e_value=5e-131) Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1;; (*TAIR) AT1G15960.1 (e_value=5e-123) | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter 6 | chr1:5482202-5485066 REVERSE LENGTH=527;; (*ITAG) Solyc11g018530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8641837-8646829 transcript_region:SL2.40ch11:8641837..8646829- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00006274g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|190607537|gb|ACE79431.1| (e_value=2e-145) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-42) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G07040.1 (e_value=3e-27) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc08g005500.2.1 (e_value=6e-86) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00006274g0002.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.83|1|0|0.16|6|3935|611; (*GB) gi|190607537|gb|ACE79431.1| (e_value=3e-158) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L439|R1A4_SOLDE (e_value=6e-80) Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2;; (*TAIR) AT1G50180.1 (e_value=5e-57) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc08g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00006274g0007.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|4|0|181; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=9e-12) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc12g009460.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00006274g0016.1 protein AED:0.48 eAED:0.49 QI:0|0|0|1|0|0.5|2|0|173; (*GB) gi|193795874|gb|ACF21990.1| (e_value=1e-76) NBS-coding resistance gene protein [Nicotiana tabacum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=1e-12) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*ITAG) Solyc08g005500.2.1 (e_value=3e-40) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00006274g0015.1 protein AED:0.47 eAED:0.51 QI:0|0|0|1|0|0|3|0|173; (*GB) gi|54261825|gb|AAV31175.1| (e_value=6e-36) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=4e-25) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=3e-19) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc08g005500.2.1 (e_value=3e-52) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00007908g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.69|0.71|0.92|0.69|0.71|14|0|967; (*GB) gi|28268678|dbj|BAC56864.1| (e_value=0.0) respiratory burst oxidase homolog [Nicotiana benthamiana];; (*SWP) sp|Q948U0|RBOHA_SOLTU (e_value=0.0) Respiratory burst oxidase homolog protein A OS=Solanum tuberosum GN=RBOHA PE=1 SV=1;; (*TAIR) AT1G64060.1 (e_value=0.0) | Symbols: ATRBOH F, ATRBOHF, RBOHAP108, RBOHF, RBOH F | respiratory burst oxidase protein F | chr1:23770266-23776317 FORWARD LENGTH=944;; (*ITAG) Solyc08g081690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61837362-61846684 transcript_region:SL2.40ch08:61837362..61846684+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase (AHRD V1 **** D7KSW1_ARALY); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00015333g0002.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|282; (*GB) gi|40557129|gb|AAR87851.1| (e_value=4e-115) fertilization-related kinase 2 [Solanum chacoense];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=1e-38) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT4G36950.1 (e_value=2e-72) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc06g065790.1.1 (e_value=1e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023463g0005.1 protein AED:0.23 eAED:0.31 QI:0|0|0|1|0.25|0.2|5|0|519; (*GB) gi|242063912|ref|XP_002453245.1| (e_value=2e-79) hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor];; (*SWP) sp|O64766|PP185_ARATH (e_value=5e-78) Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1;; (*TAIR) AT2G35030.1 (e_value=4e-79) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:14761080-14762963 REVERSE LENGTH=627;; (*ITAG) Solyc01g081240.2.1 (e_value=5e-133) genomic_reference:SL2.40ch01 gene_region:73016728-73019108 transcript_region:SL2.40ch01:73016728..73019108- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00032076g0009.1 protein AED:0.14 eAED:0.14 QI:79|0.8|0.5|1|0.8|0.83|6|0|412; (*GB) gi|359497021|ref|XP_002265622.2| (e_value=5e-164) PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Vitis vinifera];; (*TAIR) AT2G35660.1 (e_value=1e-157) | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductase family protein | chr2:14988499-14990320 FORWARD LENGTH=439;; (*ITAG) Solyc06g060880.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35282556-35285882 transcript_region:SL2.40ch06:35282556..35285882- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00032076g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|108; (*GB) gi|224053857|ref|XP_002298014.1| (e_value=2e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=9e-45) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G63910.1 (e_value=1e-60) | Symbols: AtMYB103, MYB103 | myb domain protein 103 | chr1:23719968-23721625 REVERSE LENGTH=370;; (*ITAG) Solyc08g081500.1.1 (e_value=4e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61702255-61705091 transcript_region:SL2.40ch08:61702255..61705091- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9SRB0_ARATH); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00032076g0008.1 protein AED:0.54 eAED:0.54 QI:0|1|0|1|1|1|2|0|129; (*GB) gi|225469844|ref|XP_002265824.1| (e_value=1e-18) PREDICTED: uncharacterized protein LOC100253628 [Vitis vinifera];; (*ITAG) Solyc08g078060.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:59078277-59080286 transcript_region:SL2.40ch08:59078277..59080286- functional_description:"Unknown Protein (AHRD V1)"; NbS00028707g0003.1 protein AED:0.58 eAED:0.76 QI:0|0.33|0|1|0|0|4|0|103; (*GB) gi|15231006|ref|NP_188632.1| (e_value=3e-55) phytochrome-associated serine/threonine protein phosphatase 3 [Arabidopsis thaliana];; (*SWP) sp|Q9LHE7|FYPP3_ARATH (e_value=9e-57) Phytochrome-associated serine/threonine-protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1;; (*TAIR) AT3G19980.1 (e_value=7e-58) | Symbols: ATFYPP3, EMB2736, STPP, FYPP3 | flower-specific, phytochrome-associated protein phosphatase 3 | chr3:6962008-6964761 FORWARD LENGTH=303;; (*ITAG) Solyc06g072140.2.1 (e_value=7e-58) genomic_reference:SL2.40ch06 gene_region:40853594-40859862 transcript_region:SL2.40ch06:40853594..40859862+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** C6TK28_SOYBN); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00001826g0001.1 protein AED:0.14 eAED:0.15 QI:620|0.71|0.62|1|0.71|0.75|8|0|222; (*GB) gi|225427312|ref|XP_002282079.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100243743 [Vitis vinifera];; (*TAIR) AT5G46560.1 (e_value=5e-44) | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890090 FORWARD LENGTH=387;; (*ITAG) Solyc08g077250.2.1 (e_value=9e-101) genomic_reference:SL2.40ch08 gene_region:58342092-58346823 transcript_region:SL2.40ch08:58342092..58346823- go_terms:GO:0005639 functional_description:"Genomic DNA chromosome 5 BAC clone F10E10 (AHRD V1 ***- Q9LS27_ARATH); contains Interpro domain(s) IPR018996 Inner nuclear membrane protein MAN1, C-terminal "; GO:0005639 NbS00013180g0001.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|388521003|gb|AFK48563.1| (e_value=1e-51) unknown [Medicago truncatula];; (*TAIR) AT5G50760.1 (e_value=1e-25) | Symbols: | SAUR-like auxin-responsive protein family | chr5:20644780-20645331 FORWARD LENGTH=183;; (*ITAG) Solyc06g072650.1.1 (e_value=3e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:41196002-41196514 transcript_region:SL2.40ch06:41196002..41196514+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *--- Q2HTF2_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00010642g0014.1 protein AED:0.07 eAED:0.07 QI:0|0|0.33|1|0|0|3|0|485; (*GB) gi|7339658|dbj|BAA92894.1| (e_value=0.0) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|Q9SBQ9|F3PH_PETHY (e_value=2e-91) Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1;; (*TAIR) AT1G01280.1 (e_value=0.0) | Symbols: CYP703A2, CYP703 | cytochrome P450, family 703, subfamily A, polypeptide 2 | chr1:112290-113905 FORWARD LENGTH=510;; (*ITAG) Solyc10g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3453235-3456027 transcript_region:SL2.40ch10:3453235..3456027+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010642g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|474; (*GB) gi|255564685|ref|XP_002523337.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=1e-121) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G01300.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:117065-118522 FORWARD LENGTH=485;; (*ITAG) Solyc10g009410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3472716-3474092 transcript_region:SL2.40ch10:3472716..3474092+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbC25845186g0001.1 protein AED:0.44 eAED:0.59 QI:16|1|0|1|0|0|2|119|24 NbS00021129g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|224144334|ref|XP_002325265.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT4G30010.1 (e_value=2e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14672947-14673219 FORWARD LENGTH=90;; (*ITAG) Solyc06g063310.1.1 (e_value=2e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36402097-36402360 transcript_region:SL2.40ch06:36402097..36402360- functional_description:"Fiber protein Fb15 (Fragment) (AHRD V1 ***- B4UW72_ARAHY)"; NbS00021129g0012.1 protein AED:0.14 eAED:0.14 QI:65|1|1|1|1|1|2|26|182; (*ITAG) Solyc06g063300.2.1 (e_value=2e-46) genomic_reference:SL2.40ch06 gene_region:36393612-36399129 transcript_region:SL2.40ch06:36393612..36399129+ go_terms:GO:0004842 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00021129g0011.1 protein AED:0.21 eAED:0.21 QI:214|1|1|1|0.5|0.33|3|549|150; (*GB) gi|225443417|ref|XP_002269040.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100246130 [Vitis vinifera];; (*TAIR) AT1G16840.1 (e_value=3e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5763111-5763984 REVERSE LENGTH=161;; (*ITAG) Solyc06g063320.2.1 (e_value=1e-68) genomic_reference:SL2.40ch06 gene_region:36405318-36407593 transcript_region:SL2.40ch06:36405318..36407593+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055209g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|0.5|0.66|3|0|160; (*ITAG) Solyc12g099780.1.1 (e_value=9e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:65125972-65128986 transcript_region:SL2.40ch12:65125972..65128986- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00047273g0003.1 protein AED:0.28 eAED:0.28 QI:529|0.75|0.6|0.8|1|1|5|0|174; (*GB) gi|147867253|emb|CAN81195.1| (e_value=4e-73) hypothetical protein VITISV_022854 [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=1e-49) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT3G61610.1 (e_value=2e-70) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:22799480-22801029 FORWARD LENGTH=317;; (*ITAG) Solyc01g095470.2.1 (e_value=3e-84) genomic_reference:SL2.40ch01 gene_region:78476591-78482443 transcript_region:SL2.40ch01:78476591..78482443+ go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein (AHRD V1 ***- D7LSC1_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0005975 NbS00006809g0011.1 protein AED:0.39 eAED:0.43 QI:0|0.71|0.62|1|0.28|0.37|8|0|394; (*GB) gi|33329192|gb|AAQ09996.1| (e_value=0.0) S3 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata];; (*TAIR) AT1G60995.1 (e_value=9e-113) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | chr1:22465768-22470575 REVERSE LENGTH=623;; (*ITAG) Solyc04g026280.2.1 (e_value=1e-111) genomic_reference:SL2.40ch04 gene_region:25914615-25919933 transcript_region:SL2.40ch04:25914615..25919933+ functional_description:"S1 self-incompatibility locus-linked pollen 3.15 protein (Fragment) (AHRD V1 ***- Q7XAE5_PETIN)"; NbS00006809g0012.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|0.66|0.5|4|319|108; (*GB) gi|225463197|ref|XP_002270756.1| (e_value=8e-68) PREDICTED: vesicle transport protein SFT2B [Vitis vinifera];; (*SWP) sp|Q5U3Y5|SFT2A_RAT (e_value=2e-20) Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1;; (*TAIR) AT5G23550.1 (e_value=7e-66) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:7939914-7941479 REVERSE LENGTH=175;; (*ITAG) Solyc03g117000.2.1 (e_value=5e-46) genomic_reference:SL2.40ch03 gene_region:60314446-60322820 transcript_region:SL2.40ch03:60314446..60322820+ go_terms:GO:0005515 functional_description:"Vesicle transport protein SFT2A (AHRD V1 **-- C3KJB6_ANOFI); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0005515 NbS00006809g0004.1 protein AED:0.40 eAED:0.40 QI:153|0|0.5|0.5|1|1|2|0|110; (*TAIR) AT5G23550.1 (e_value=2e-14) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:7939914-7941479 REVERSE LENGTH=175;; (*ITAG) Solyc04g047670.2.1 (e_value=5e-24) genomic_reference:SL2.40ch04 gene_region:34723955-34731050 transcript_region:SL2.40ch04:34723955..34731050+ go_terms:GO:0016021 functional_description:"Genomic DNA chromosome 5 TAC clone K12G2 (AHRD V1 *--- Q9FIP2_ARATH); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0016021 NbS00017547g0012.1 protein AED:0.08 eAED:0.08 QI:36|1|0.66|1|1|1|3|0|479; (*GB) gi|365222926|gb|AEW69815.1| (e_value=0.0) Hop-interacting protein THI116 [Solanum lycopersicum];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=0.0) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=0.0) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc03g117250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60489302-60492373 transcript_region:SL2.40ch03:60489302..60492373- functional_description:"Flotillin 1 (AHRD V1 *-*- B3V5K3_9EURY); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00017547g0013.1 protein AED:0.33 eAED:0.33 QI:0|1|0.83|1|0.8|0.66|6|265|260; (*GB) gi|356557229|ref|XP_003546920.1| (e_value=4e-17) PREDICTED: uncharacterized protein LOC100811711 [Glycine max];; (*ITAG) Solyc03g117210.2.1 (e_value=4e-83) genomic_reference:SL2.40ch03 gene_region:60461511-60465388 transcript_region:SL2.40ch03:60461511..60465388- functional_description:"Unknown Protein (AHRD V1)"; NbS00017547g0016.1 protein AED:0.24 eAED:0.52 QI:0|0|0|1|0|0|2|0|398; (*GB) gi|358344742|ref|XP_003636446.1| (e_value=1e-51) F-box/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=3e-16) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1;; (*TAIR) AT1G80630.1 (e_value=3e-31) | Symbols: | RNI-like superfamily protein | chr1:30308879-30310615 REVERSE LENGTH=578;; (*ITAG) Solyc03g117200.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:60457109-60459160 transcript_region:SL2.40ch03:60457109..60459160+ functional_description:"F-box family protein (AHRD V1 ***- B9GNT5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003363g0012.1 protein AED:0.18 eAED:0.19 QI:90|0.8|0.75|1|0.66|0.81|16|0|469; (*GB) gi|359475324|ref|XP_003631655.1| (e_value=0.0) PREDICTED: probable phenylalanyl-tRNA synthetase alpha chain-like [Vitis vinifera];; (*SWP) sp|Q9T034|SYFA_ARATH (e_value=0.0) Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3;; (*TAIR) AT4G39280.1 (e_value=0.0) | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485;; (*ITAG) Solyc02g090860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46907110-46917832 transcript_region:SL2.40ch02:46907110..46917832- go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 **** B6SS66_MAIZE); contains Interpro domain(s) IPR002319 Phenylalanyl-tRNA synthetase, class IIc-related "; GO:0005515,GO:0004826 NbS00003363g0009.1 protein AED:0.47 eAED:0.48 QI:0|0.5|0.6|1|0.75|0.8|5|0|115; (*GB) gi|224094777|ref|XP_002310231.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZ37|AP3S_ARATH (e_value=5e-50) AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1;; (*TAIR) AT3G50860.1 (e_value=4e-51) | Symbols: | Clathrin adaptor complex small chain family protein | chr3:18902346-18903959 FORWARD LENGTH=166;; (*ITAG) Solyc01g109640.2.1 (e_value=7e-66) genomic_reference:SL2.40ch01 gene_region:88288063-88291525 transcript_region:SL2.40ch01:88288063..88291525+ go_terms:GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-3 complex subunit sigma-2 (AHRD V1 ***- B4FA26_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030117,GO:0015031,GO:0006810 NbS00003363g0010.1 protein AED:0.06 eAED:0.06 QI:163|1|1|1|0.6|0.83|6|460|685; (*GB) gi|359475176|ref|XP_003631610.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100852464 [Vitis vinifera];; (*TAIR) AT2G21710.1 (e_value=0.0) | Symbols: EMB2219 | Mitochondrial transcription termination factor family protein | chr2:9270886-9273307 FORWARD LENGTH=641;; (*ITAG) Solyc01g109630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88282474-88285949 transcript_region:SL2.40ch01:88282474..88285949- functional_description:"mTERF domain-containing protein 3, mitochondrial (AHRD V1 *--- MTER3_HUMAN); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00003363g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.28|0.85|1|1|7|0|799; (*GB) gi|359475328|ref|XP_003631657.1| (e_value=6e-179) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera];; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=6e-140) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=4e-141) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc01g109650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00019220g0003.1 protein AED:0.51 eAED:0.61 QI:0|0|0|1|0.5|0.6|5|0|155; (*GB) gi|255579456|ref|XP_002530571.1| (e_value=9e-25) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g074890.1.1 (e_value=1e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:42786209-42786871 transcript_region:SL2.40ch06:42786209..42786871+ go_terms:GO:0015031 functional_description:"Trigger factor (AHRD V1 *-*- B4W095_9CYAN); contains Interpro domain(s) IPR008881 Trigger factor, ribosome-binding, bacterial "; GO:0015031 NbS00019220g0112.1 protein AED:0.16 eAED:0.16 QI:290|0.92|0.86|1|1|1|15|0|1108 NbS00019220g0113.1 protein AED:0.02 eAED:0.02 QI:81|0.91|0.92|1|0.83|0.84|13|458|426 NbS00019220g0114.1 protein AED:0.75 eAED:0.76 QI:0|0|0|0.33|0|0|3|0|123 NbS00001266g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|2|0|111; (*GB) gi|255558816|ref|XP_002520431.1| (e_value=9e-53) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT2G29590.1 (e_value=5e-37) | Symbols: | Thioesterase superfamily protein | chr2:12654602-12655432 REVERSE LENGTH=158;; (*ITAG) Solyc06g076690.2.1 (e_value=9e-72) genomic_reference:SL2.40ch06 gene_region:44008390-44012037 transcript_region:SL2.40ch06:44008390..44012037- go_terms:GO:0016291,GO:0042802 functional_description:"Acyl-coenzyme A thioesterase 13 (AHRD V1 **** ACO13_MOUSE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00001266g0005.1 protein AED:0.36 eAED:0.36 QI:329|1|1|1|1|1|3|239|158; (*GB) gi|255558816|ref|XP_002520431.1| (e_value=3e-78) acyl-CoA thioesterase, putative [Ricinus communis];; (*SWP) sp|Q5R833|ACO13_PONAB (e_value=5e-14) Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1;; (*TAIR) AT2G29590.1 (e_value=3e-62) | Symbols: | Thioesterase superfamily protein | chr2:12654602-12655432 REVERSE LENGTH=158;; (*ITAG) Solyc06g076690.2.1 (e_value=9e-103) genomic_reference:SL2.40ch06 gene_region:44008390-44012037 transcript_region:SL2.40ch06:44008390..44012037- go_terms:GO:0016291,GO:0042802 functional_description:"Acyl-coenzyme A thioesterase 13 (AHRD V1 **** ACO13_MOUSE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00001266g0007.1 protein AED:0.43 eAED:0.55 QI:0|0|0.25|0.75|1|1|4|289|110; (*GB) gi|255558816|ref|XP_002520431.1| (e_value=1e-18) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT2G29590.1 (e_value=4e-14) | Symbols: | Thioesterase superfamily protein | chr2:12654602-12655432 REVERSE LENGTH=158;; (*ITAG) Solyc06g076690.2.1 (e_value=5e-33) genomic_reference:SL2.40ch06 gene_region:44008390-44012037 transcript_region:SL2.40ch06:44008390..44012037- go_terms:GO:0016291,GO:0042802 functional_description:"Acyl-coenzyme A thioesterase 13 (AHRD V1 **** ACO13_MOUSE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00011611g0004.1 protein AED:0.28 eAED:0.28 QI:397|1|0.81|1|0.9|0.81|11|550|226; (*GB) gi|359483975|ref|XP_002270298.2| (e_value=1e-96) PREDICTED: uncharacterized protein LOC100263216 [Vitis vinifera];; (*TAIR) AT1G30660.1 (e_value=7e-81) | Symbols: | nucleic acid binding;nucleic acid binding | chr1:10876853-10879017 FORWARD LENGTH=337;; (*ITAG) Solyc02g070220.2.1 (e_value=3e-104) genomic_reference:SL2.40ch02 gene_region:34557704-34563659 transcript_region:SL2.40ch02:34557704..34563659- functional_description:"DNA primase/helicase (AHRD V1 **-- C3QJ18_9BACE); contains Interpro domain(s) IPR006154 Toprim domain, subgroup "; NbS00010747g0014.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|225432254|ref|XP_002271563.1| (e_value=9e-50) PREDICTED: universal stress protein MJ0531 [Vitis vinifera];; (*TAIR) AT2G47710.1 (e_value=2e-46) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc12g099520.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64985850-64987166 transcript_region:SL2.40ch12:64985850..64987166- go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00010747g0002.1 protein AED:0.10 eAED:0.11 QI:64|0.66|0.7|1|1|1|10|0|1353; (*GB) gi|225432246|ref|XP_002275652.1| (e_value=0.0) PREDICTED: condensin-2 complex subunit D3-like [Vitis vinifera];; (*SWP) sp|P42695|CNDD3_HUMAN (e_value=2e-48) Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2;; (*TAIR) AT4G15890.1 (e_value=0.0) | Symbols: | binding | chr4:9017453-9022745 FORWARD LENGTH=1314;; (*ITAG) Solyc12g099510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64971202-64984594 transcript_region:SL2.40ch12:64971202..64984594- go_terms:GO:0005488,GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0005488,GO:0006457,GO:0031072 NbS00010747g0017.1 protein AED:0.19 eAED:0.20 QI:0|0.77|0.8|1|0.66|0.7|10|498|500; (*GB) gi|359477277|ref|XP_002275739.2| (e_value=1e-180) PREDICTED: ubiquitin-like-specific protease ESD4-like [Vitis vinifera];; (*SWP) sp|Q94F30|ESD4_ARATH (e_value=6e-154) Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1;; (*TAIR) AT4G15880.1 (e_value=5e-155) | Symbols: ESD4, ATESD4 | Cysteine proteinases superfamily protein | chr4:9012769-9015797 FORWARD LENGTH=489;; (*ITAG) Solyc12g099530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64988458-64992828 transcript_region:SL2.40ch12:64988458..64992828+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010747g0021.1 protein AED:0.09 eAED:0.14 QI:342|0.71|0.73|0.93|0.85|0.8|15|0|833; (*GB) gi|225432256|ref|XP_002271765.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240940 [Vitis vinifera];; (*SWP) sp|Q99661|KIF2C_HUMAN (e_value=5e-118) Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2;; (*TAIR) AT3G16630.2 (e_value=0.0) | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794;; (*ITAG) Solyc12g099540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64994416-65000932 transcript_region:SL2.40ch12:64994416..65000932- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q940B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00010747g0019.1 protein AED:0.38 eAED:0.38 QI:10|0|0|1|0|0|2|0|76; (*GB) gi|78102606|ref|YP_358745.1| (e_value=8e-29) hypothetical protein NisyCp102 [Nicotiana sylvestris];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-30) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021260.1.1 (e_value=5e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13395518-13396326 transcript_region:SL2.40ch11:13395518..13396326- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- D7P347_SYZCU)"; NbS00049275g0016.1 protein AED:0.17 eAED:0.17 QI:37|0.88|0.7|1|0.77|0.7|10|0|1513; (*GB) gi|147773448|emb|CAN62511.1| (e_value=1e-97) hypothetical protein VITISV_039514 [Vitis vinifera];; (*SWP) sp|Q9SB63|MOS1_ARATH (e_value=7e-56) Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana GN=MOS1 PE=1 SV=2;; (*TAIR) AT4G24680.1 (e_value=5e-54) | Symbols: MOS1 | modifier of snc1 | chr4:12733425-12739737 FORWARD LENGTH=1427;; (*ITAG) Solyc03g112660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57083095-57092849 transcript_region:SL2.40ch03:57083095..57092849+ functional_description:"MOS1 (AHRD V1 *-*- D9IVG9_ARATH); contains Interpro domain(s) IPR009738 BAT2, N-terminal "; NbS00049275g0011.1 protein AED:0.19 eAED:0.19 QI:104|1|1|1|0.66|0.75|4|75|134; (*GB) gi|168048842|ref|XP_001776874.1| (e_value=2e-53) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=2e-51) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=1e-52) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc04g078620.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:60902088-60906206 transcript_region:SL2.40ch04:60902088..60906206+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00049275g0014.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.2|0.6|0.25|0.4|5|0|345; (*GB) gi|225466700|ref|XP_002263464.1| (e_value=5e-121) PREDICTED: uncharacterized protein LOC100265372 [Vitis vinifera];; (*TAIR) AT5G63050.1 (e_value=6e-99) | Symbols: EMB2759 | embryo defective 2759 | chr5:25293109-25294799 FORWARD LENGTH=345;; (*ITAG) Solyc03g112670.2.1 (e_value=1e-178) genomic_reference:SL2.40ch03 gene_region:57094988-57100243 transcript_region:SL2.40ch03:57094988..57100243+ functional_description:"Genomic DNA chromosome 5 P1 clone MDC12 (AHRD V1 **-- Q9FML8_ARATH)"; NbS00041539g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0.2|0.8|0|0.2|5|0|174; (*GB) gi|225452883|ref|XP_002283884.1| (e_value=7e-55) PREDICTED: transmembrane emp24 domain-containing protein bai isoform 1 [Vitis vinifera];; (*TAIR) AT1G26690.1 (e_value=3e-47) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214;; (*ITAG) Solyc05g013130.2.1 (e_value=1e-52) genomic_reference:SL2.40ch05 gene_region:6223649-6227060 transcript_region:SL2.40ch05:6223649..6227060- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00041539g0005.1 protein AED:0.20 eAED:0.22 QI:395|0.75|0.84|1|0.91|0.84|13|584|603; (*GB) gi|8439543|gb|AAF74982.1|AF082892_1 (e_value=0.0) cystathionine gamma-synthase isoform 2 [Solanum tuberosum];; (*SWP) sp|P55217|METB_ARATH (e_value=0.0) Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3;; (*TAIR) AT3G01120.1 (e_value=0.0) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00017890g0011.1 protein AED:0.16 eAED:0.17 QI:460|0.73|0.62|1|0.69|0.79|24|0|2004; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*SWP) sp|F4I096|MED13_ARATH (e_value=0.0) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.2 (e_value=0.0) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20647714 FORWARD LENGTH=2001;; (*ITAG) Solyc04g039950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00035168g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.54|1|1|1|11|0|857; (*GB) gi|255539777|ref|XP_002510953.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3UM29|COG7_MOUSE (e_value=2e-49) Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus GN=Cog7 PE=2 SV=1;; (*TAIR) AT5G51430.1 (e_value=0.0) | Symbols: EYE | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:20887044-20890795 REVERSE LENGTH=836;; (*ITAG) Solyc05g006950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1542784-1548453 transcript_region:SL2.40ch05:1542784..1548453+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 7 (AHRD V1 ***- COG7_MOUSE); contains Interpro domain(s) IPR019335 Conserved oligomeric Golgi complex, subunit 7 "; GO:0005515 NbS00058985g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|276; (*GB) gi|359479575|ref|XP_003632295.1| (e_value=6e-90) PREDICTED: 3-ketoacyl-CoA synthase 17-like [Vitis vinifera];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=1e-80) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=1e-81) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc09g065800.2.1 (e_value=3e-139) genomic_reference:SL2.40ch09 gene_region:59668271-59669889 transcript_region:SL2.40ch09:59668271..59669889- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00003175g0007.1 protein AED:0.11 eAED:0.11 QI:105|1|1|1|0.62|0.66|9|593|337; (*GB) gi|297738892|emb|CBI28137.3| (e_value=5e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q03251|GRP8_ARATH (e_value=9e-15) Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1;; (*TAIR) AT5G19960.1 (e_value=7e-38) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6744029-6746133 FORWARD LENGTH=337;; (*ITAG) Solyc10g051390.1.1 (e_value=2e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47556796-47557568 transcript_region:SL2.40ch10:47556796..47557568+ go_terms:GO:0008266 functional_description:"RNA-binding glycine-rich protein-1b (AHRD V1 **** Q40427_NICSY); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00003175g0006.1 protein AED:0.33 eAED:0.33 QI:0|1|0.6|1|1|1|5|0|161; (*GB) gi|225449629|ref|XP_002279556.1| (e_value=5e-86) PREDICTED: psbP-like protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|O80634|PPL2_ARATH (e_value=7e-80) PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2;; (*TAIR) AT2G39470.1 (e_value=5e-81) | Symbols: PPL2 | PsbP-like protein 2 | chr2:16476335-16477653 FORWARD LENGTH=238;; (*ITAG) Solyc10g054420.1.1 (e_value=3e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50836162-50837363 transcript_region:SL2.40ch10:50836162..50837363+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- A0YXJ6_LYNSP); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0019898 NbS00003175g0105.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|0.5|2|0|364 NbS00021924g0013.1 protein AED:0.14 eAED:0.14 QI:116|1|1|1|0.66|0.5|4|281|189; (*GB) gi|359489009|ref|XP_002278703.2| (e_value=2e-40) PREDICTED: uncharacterized protein LOC100249192 [Vitis vinifera];; (*TAIR) AT5G39530.1 (e_value=7e-35) | Symbols: | Protein of unknown function (DUF1997) | chr5:15826285-15827517 REVERSE LENGTH=239;; (*ITAG) Solyc02g088270.2.1 (e_value=2e-59) genomic_reference:SL2.40ch02 gene_region:44993109-44994686 transcript_region:SL2.40ch02:44993109..44994686+ functional_description:"Genomic DNA chromosome 5 P1 clone MUL8 (AHRD V1 ***- Q9FLY2_ARATH); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 "; NbS00021924g0008.1 protein AED:0.40 eAED:0.46 QI:0|0.75|0.6|1|1|1|5|4|178; (*GB) gi|225452895|ref|XP_002283961.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100242230 [Vitis vinifera];; (*ITAG) Solyc02g088280.2.1 (e_value=2e-88) genomic_reference:SL2.40ch02 gene_region:45005916-45008073 transcript_region:SL2.40ch02:45005916..45008073+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021924g0014.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|730; (*GB) gi|145308227|gb|ABP57378.1| (e_value=0.0) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc02g088290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45008764-45014036 transcript_region:SL2.40ch02:45008764..45014036- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 *--- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00021924g0111.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|2|325|356 NbS00021924g0112.1 protein AED:0.18 eAED:0.18 QI:0|0.91|0.92|1|1|1|13|468|748 NbS00021924g0116.1 protein AED:0.22 eAED:0.22 QI:84|0|0|0.25|0|0|4|0|182 NbS00017958g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.2|0|0.66|1|1|6|0|261; (*GB) gi|302142728|emb|CBI19931.3| (e_value=5e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=1e-79) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G77020.1 (e_value=5e-114) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:28945056-28946867 REVERSE LENGTH=379;; (*ITAG) Solyc04g063390.2.1 (e_value=8e-153) genomic_reference:SL2.40ch04 gene_region:54638505-54641692 transcript_region:SL2.40ch04:54638505..54641692- go_terms:GO:0030544,GO:0051087 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 **** B4G111_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544,GO:0051087 NbS00025896g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|4|0|504; (*GB) gi|225434963|ref|XP_002283914.1| (e_value=4e-128) PREDICTED: probable protein phosphatase 2C 23-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZV25|P2C23_ARATH (e_value=6e-115) Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1;; (*TAIR) AT2G28890.1 (e_value=4e-116) | Symbols: PLL4 | poltergeist like 4 | chr2:12405799-12408062 REVERSE LENGTH=654;; (*ITAG) Solyc10g086490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64620504-64622612 transcript_region:SL2.40ch10:64620504..64622612- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00034409g0002.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0.5|2|708|97 NbS00020375g0001.1 protein AED:0.44 eAED:0.58 QI:0|0.5|0|0.8|1|1|5|0|238; (*GB) gi|296082631|emb|CBI21636.3| (e_value=6e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G45750.1 (e_value=1e-39) | Symbols: | Nucleotidyltransferase family protein | chr3:16793855-16797380 REVERSE LENGTH=682;; (*ITAG) Solyc11g044900.1.1 (e_value=1e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36343055-36356066 transcript_region:SL2.40ch11:36343055..36356066+ functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 *--- TRF5_ASHGO)"; NbS00056887g0001.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc01g067970.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69400119-69400415 transcript_region:SL2.40ch01:69400119..69400415+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041760g0006.1 protein AED:0.05 eAED:0.05 QI:77|0.5|0.6|0.8|1|0.8|5|474|64 NbS00041760g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|224140667|ref|XP_002323702.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=1e-20) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT1G79620.1 (e_value=9e-27) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc10g085670.1.1 (e_value=1e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64098873-64104331 transcript_region:SL2.40ch10:64098873..64104331- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00043631g0006.1 protein AED:0.28 eAED:0.28 QI:262|1|0.9|1|0.66|0.6|10|0|659; (*GB) gi|378747581|gb|AFC36404.1| (e_value=0.0) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00045717g0008.1 protein AED:0.31 eAED:0.31 QI:255|1|0.5|1|1|1|2|0|95; (*GB) gi|224057190|ref|XP_002299164.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g068620.2.1 (e_value=6e-37) genomic_reference:SL2.40ch06 gene_region:38927892-38929148 transcript_region:SL2.40ch06:38927892..38929148- functional_description:"Unknown Protein (AHRD V1)"; NbS00045717g0009.1 protein AED:0.40 eAED:0.40 QI:13|0.5|0.44|1|0.62|0.77|9|285|220; (*GB) gi|390132084|gb|AFL55397.1| (e_value=9e-38) ADP-glucose pyrophosphorylase large subunit 2 [Ipomoea batatas];; (*SWP) sp|Q00081|GLGL1_SOLTU (e_value=5e-39) Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1;; (*TAIR) AT4G39210.1 (e_value=4e-36) | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase family protein | chr4:18260332-18263181 FORWARD LENGTH=521;; (*ITAG) Solyc01g109790.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:88397300-88401933 transcript_region:SL2.40ch01:88397300..88401933- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** Q15I66_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site "; GO:0008878 NbS00006556g0003.1 protein AED:0.23 eAED:0.23 QI:313|1|1|1|0.66|0.8|10|458|429; (*GB) gi|225462533|ref|XP_002265606.1| (e_value=0.0) PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera];; (*SWP) sp|Q55BZ4|PCY2_DICDI (e_value=5e-123) Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1;; (*TAIR) AT2G38670.1 (e_value=0.0) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc07g009490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4599567-4605999 transcript_region:SL2.40ch07:4599567..4605999+ go_terms:GO:0004306 functional_description:"Ethanolamine-phosphate cytidylyltransferase (AHRD V1 **** C5DB57_VITVI); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306 NbS00039563g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.71|0.85|1|0.85|7|0|218; (*GB) gi|384081612|ref|NP_001244910.1| (e_value=1e-124) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Solanum lycopersicum];; (*SWP) sp|Q8GW29|LOG7_ARATH (e_value=4e-116) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2;; (*TAIR) AT5G06300.1 (e_value=3e-117) | Symbols: | Putative lysine decarboxylase family protein | chr5:1922042-1925278 REVERSE LENGTH=217;; (*ITAG) Solyc10g082020.1.1 (e_value=2e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62254561-62258072 transcript_region:SL2.40ch10:62254561..62258072+ go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00020533g0001.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|346; (*GB) gi|119640|sp|P10967.1|ACCH3_SOLLC (e_value=8e-165) RecName: Full=1-aminocyclopropane-1-carboxylate oxidase homolog; AltName: Full=Protein E8;; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=2e-166) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=5e-144) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g089760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64806059-64807367 transcript_region:SL2.40ch09:64806059..64807367+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00020533g0009.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|2|0|99; (*GB) gi|255576838|ref|XP_002529305.1| (e_value=1e-30) Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=3e-28) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=2e-29) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g089690.2.1 (e_value=8e-45) genomic_reference:SL2.40ch09 gene_region:64793027-64795100 transcript_region:SL2.40ch09:64793027..64795100+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00020533g0007.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|0.33|0.25|4|0|237; (*GB) gi|350538985|ref|NP_001234624.1| (e_value=2e-25) 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum];; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=1e-22) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1;; (*TAIR) AT5G59530.1 (e_value=2e-16) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:23994434-23995715 REVERSE LENGTH=364;; (*ITAG) Solyc09g089690.2.1 (e_value=7e-40) genomic_reference:SL2.40ch09 gene_region:64793027-64795100 transcript_region:SL2.40ch09:64793027..64795100+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00000677g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0.25|1|1|1|4|688|223; (*GB) gi|358248944|ref|NP_001239711.1| (e_value=6e-71) uncharacterized protein LOC100811024 [Glycine max];; (*SWP) sp|Q9SUT9|RTNLB_ARATH (e_value=1e-64) Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1;; (*TAIR) AT4G11220.1 (e_value=9e-66) | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein 2 | chr4:6838176-6839578 REVERSE LENGTH=271;; (*ITAG) Solyc08g081730.2.1 (e_value=1e-91) genomic_reference:SL2.40ch08 gene_region:61872803-61875069 transcript_region:SL2.40ch08:61872803..61875069+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00000677g0007.1 protein AED:0.09 eAED:0.09 QI:735|0.93|0.93|1|0.86|0.93|16|301|846; (*GB) gi|297742262|emb|CBI34411.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P28737|MSP1_YEAST (e_value=9e-67) Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2;; (*TAIR) AT1G64110.3 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:23796887-23801255 REVERSE LENGTH=827;; (*ITAG) Solyc08g081740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61875719-61881459 transcript_region:SL2.40ch08:61875719..61881459- go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--* KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00016101g0008.1 protein AED:0.13 eAED:0.13 QI:789|1|1|1|1|1|5|142|325; (*GB) gi|225626263|gb|ACN97181.1| (e_value=0.0) peroxidase [Populus trichocarpa];; (*SWP) sp|Q42580|PER21_ARATH (e_value=3e-173) Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1;; (*TAIR) AT2G37130.1 (e_value=2e-174) | Symbols: | Peroxidase superfamily protein | chr2:15598225-15600004 REVERSE LENGTH=327;; (*ITAG) Solyc09g007520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1092950-1099568 transcript_region:SL2.40ch09:1092950..1099568- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** C1KA92_POPTR); contains Interpro domain(s) IPR000823 Plant peroxidase "; GO:0004601,GO:0005515 NbS00016101g0014.1 protein AED:0.10 eAED:0.13 QI:50|0.8|0.5|1|0.8|0.66|6|0|532; (*GB) gi|147858806|emb|CAN80846.1| (e_value=2e-164) hypothetical protein VITISV_014889 [Vitis vinifera];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=2e-11) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT2G37150.2 (e_value=1e-77) | Symbols: | RING/U-box superfamily protein | chr2:15603748-15605988 REVERSE LENGTH=546;; (*ITAG) Solyc09g007530.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1106574-1110425 transcript_region:SL2.40ch09:1106574..1110425- go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016101g0013.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|548; (*GB) gi|195536980|dbj|BAG68210.1| (e_value=0.0) lectin receptor kinase-like protein [Nicotiana benthamiana];; (*SWP) sp|Q9LFH9|LRK81_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1;; (*TAIR) AT3G53380.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:19789204-19791351 REVERSE LENGTH=715;; (*ITAG) Solyc10g084250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63196795-63198960 transcript_region:SL2.40ch10:63196795..63198960+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00016101g0010.1 protein AED:0.81 eAED:0.92 QI:3|0|0|0.5|0|0|4|0|138 NbS00051749g0002.1 protein AED:0.08 eAED:0.08 QI:328|0.66|0.75|1|0|0.25|4|0|368; (*GB) gi|356556916|ref|XP_003546766.1| (e_value=8e-83) PREDICTED: interactor of constitutive active ROPs 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9M9F9|ICR4_ARATH (e_value=7e-34) Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=2;; (*TAIR) AT1G78430.1 (e_value=6e-35) | Symbols: RIP2 | ROP interactive partner 2 | chr1:29509605-29510679 FORWARD LENGTH=324;; (*ITAG) Solyc07g056650.2.1 (e_value=3e-119) genomic_reference:SL2.40ch07 gene_region:61779288-61780829 transcript_region:SL2.40ch07:61779288..61780829+ functional_description:"Interactor of constitutive active ROPs 1 (AHRD V1 ***- ICR1_ARATH)"; NbS00013187g0014.1 protein AED:0.11 eAED:0.11 QI:100|0.90|0.91|1|0.81|0.75|12|475|496; (*GB) gi|255540367|ref|XP_002511248.1| (e_value=0.0) Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis];; (*SWP) sp|Q86TW2|ADCK1_HUMAN (e_value=7e-42) Uncharacterized aarF domain-containing protein kinase 1 OS=Homo sapiens GN=ADCK1 PE=1 SV=2;; (*TAIR) AT4G24810.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:12786791-12789598 REVERSE LENGTH=481;; (*ITAG) Solyc07g009150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4190366-4203458 transcript_region:SL2.40ch07:4190366..4203458+ go_terms:GO:0005515 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-- ADCK1_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005515 NbS00013187g0013.1 protein AED:0.19 eAED:0.19 QI:142|0.75|0.88|1|1|1|9|240|409; (*GB) gi|117607065|gb|ABK42076.1| (e_value=0.0) 26S proteasome subunit RPN7 [Capsicum annuum];; (*SWP) sp|Q93Y35|PSMD6_ARATH (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1;; (*TAIR) AT4G24820.2 (e_value=0.0) | Symbols: | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr4:12790471-12792599 REVERSE LENGTH=387;; (*ITAG) Solyc07g009140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4157332-4163343 transcript_region:SL2.40ch07:4157332..4163343+ go_terms:GO:0032183 functional_description:"26S proteasome non-ATPase regulatory subunit 6 (AHRD V1 ***- B4FVL1_MAIZE); contains Interpro domain(s) IPR019585 26S proteasome, regulatory subunit Rpn7 "; GO:0032183 NbS00013187g0015.1 protein AED:0.32 eAED:0.32 QI:169|1|1|1|1|1|5|494|205; (*GB) gi|255563580|ref|XP_002522792.1| (e_value=6e-87) Neighbor of COX4, putative [Ricinus communis];; (*SWP) sp|Q9FG71|U172_ARATH (e_value=4e-79) UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1;; (*TAIR) AT5G55940.1 (e_value=3e-80) | Symbols: emb2731 | Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208;; (*ITAG) Solyc07g009160.2.1 (e_value=2e-112) genomic_reference:SL2.40ch07 gene_region:4204055-4210261 transcript_region:SL2.40ch07:4204055..4210261+ go_terms:GO:0005515 functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 "; GO:0005515 NbS00013187g0021.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.25|4|0|730; (*GB) gi|356600306|gb|AET22504.1| (e_value=6e-100) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=4e-66) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-42) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g011960.1.1 (e_value=5e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4319129-4321795 transcript_region:SL2.40ch04:4319129..4321795+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013187g0003.1 protein AED:0.07 eAED:0.07 QI:63|0|0.66|1|0|0.33|3|349|844; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-158) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-94) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=3e-62) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc07g009180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00017059g0003.1 protein AED:0.12 eAED:0.12 QI:178|1|1|1|0.66|0.57|7|355|177; (*GB) gi|224053911|ref|XP_002298037.1| (e_value=5e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|A4XKC6|RUVX_CALS8 (e_value=3e-18) Putative Holliday junction resolvase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=Csac_1776 PE=3 SV=1;; (*TAIR) AT3G52905.1 (e_value=1e-65) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:19614142-19615471 REVERSE LENGTH=170;; (*ITAG) Solyc10g074990.1.1 (e_value=1e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58018490-58019867 transcript_region:SL2.40ch10:58018490..58019867- go_terms:GO:0003676,GO:0005737 functional_description:"GRF domain class transcription factor (AHRD V1 ***- D9ZIZ7_MALDO); contains Interpro domain(s) IPR005227 Resolvase, holliday junction-type, YqgF-like "; GO:0003676,GO:0005737 NbS00061387g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.6|0.5|1|0.4|0.66|6|0|522; (*GB) gi|296086152|emb|CBI31593.3| (e_value=1e-129) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=4e-91) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT5G58840.1 (e_value=1e-127) | Symbols: | Subtilase family protein | chr5:23759043-23761947 FORWARD LENGTH=713;; (*ITAG) Solyc09g009750.1.1 (e_value=4e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3234041-3240688 transcript_region:SL2.40ch09:3234041..3240688+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00005005g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|343; (*GB) gi|297814634|ref|XP_002875200.1| (e_value=2e-56) hypothetical protein ARALYDRAFT_484241 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G11810.1 (e_value=2e-57) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3727819-3728865 FORWARD LENGTH=348;; (*ITAG) Solyc04g005530.2.1 (e_value=8e-131) genomic_reference:SL2.40ch04 gene_region:352495-353967 transcript_region:SL2.40ch04:352495..353967- functional_description:"Unknown Protein (AHRD V1)"; NbS00005005g0014.1 protein AED:0.33 eAED:0.53 QI:0|0|0|1|0|0.33|3|0|153 NbS00005005g0013.1 protein AED:0.61 eAED:0.76 QI:0|0|0|0.28|0.83|0.85|7|0|246 NbS00005005g0012.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.2|0.5|0.6|5|0|175 NbS00027332g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|546; (*GB) gi|2081604|dbj|BAA19926.1| (e_value=0.0) PEThy; ZPT4-2 [Petunia x hybrida];; (*SWP) sp|Q9M202|ZAT9_ARATH (e_value=7e-17) Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1;; (*TAIR) AT1G26610.1 (e_value=8e-40) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc04g005440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:307618-309297 transcript_region:SL2.40ch04:307618..309297+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00008002g0006.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|0.5|0.33|3|0|314; (*GB) gi|225455598|ref|XP_002270309.1| (e_value=1e-92) PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=4e-49) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT5G62220.1 (e_value=1e-90) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00008002g0007.1 protein AED:0.28 eAED:0.28 QI:204|0.5|0.66|1|0|0.33|3|0|102; (*GB) gi|147855455|emb|CAN79607.1| (e_value=1e-14) hypothetical protein VITISV_027501 [Vitis vinifera];; (*TAIR) AT1G72320.1 (e_value=2e-14) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753;; (*ITAG) Solyc03g123640.2.1 (e_value=2e-23) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00006690g0001.1 protein AED:0.11 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|356536063|ref|XP_003536560.1| (e_value=4e-86) PREDICTED: protein NDR1-like [Glycine max];; (*SWP) sp|O48915|NDR1_ARATH (e_value=8e-15) Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1;; (*TAIR) AT4G05220.1 (e_value=3e-82) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:2685104-2685784 REVERSE LENGTH=226;; (*ITAG) Solyc02g080100.1.1 (e_value=3e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38983718-38984461 transcript_region:SL2.40ch02:38983718..38984461- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZH6_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00006690g0010.1 protein AED:0.26 eAED:0.33 QI:68|0|0|1|0.66|0.5|4|0|250; (*GB) gi|356575775|ref|XP_003556012.1| (e_value=5e-74) PREDICTED: serine/threonine kinase-related protein [Glycine max];; (*SWP) sp|Q8GWJ7|CRK19_ARATH (e_value=3e-54) Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2;; (*TAIR) AT4G23270.1 (e_value=3e-55) | Symbols: CRK19 | cysteine-rich RLK (RECEPTOR-like protein kinase) 19 | chr4:12171133-12173794 FORWARD LENGTH=645;; (*ITAG) Solyc12g087920.1.1 (e_value=2e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61872727-61876078 transcript_region:SL2.40ch12:61872727..61876078- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00006690g0009.1 protein AED:0.36 eAED:0.37 QI:0|1|0.33|1|0.5|0.66|3|0|211; (*GB) gi|356575783|ref|XP_003556016.1| (e_value=3e-82) PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 4 [Glycine max];; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=3e-76) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3;; (*TAIR) AT4G23180.1 (e_value=2e-77) | Symbols: CRK10, RLK4 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669;; (*ITAG) Solyc02g079590.2.1 (e_value=2e-58) genomic_reference:SL2.40ch02 gene_region:38694213-38700089 transcript_region:SL2.40ch02:38694213..38700089+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00006690g0002.1 protein AED:0.32 eAED:0.36 QI:0|0.33|0.42|0.85|1|1|7|473|221; (*GB) gi|218199045|gb|EEC81472.1| (e_value=8e-27) hypothetical protein OsI_24797 [Oryza sativa Indica Group];; (*TAIR) AT4G21220.1 (e_value=2e-24) | Symbols: | Trimeric LpxA-like enzymes superfamily protein | chr4:11316978-11319067 REVERSE LENGTH=304;; (*ITAG) Solyc03g031560.2.1 (e_value=1e-64) genomic_reference:SL2.40ch03 gene_region:8338640-8345254 transcript_region:SL2.40ch03:8338640..8345254+ go_terms:GO:0016410 functional_description:"UDP-3-O- (AHRD V1 ***- B9RXS8_RICCO); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0016410 NbS00043717g0001.1 protein AED:0.01 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|683; (*GB) gi|225451363|ref|XP_002263205.1| (e_value=0.0) PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera];; (*SWP) sp|Q7X6Y7|MMD1_ARATH (e_value=0.0) PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1;; (*TAIR) AT1G66170.1 (e_value=0.0) | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily protein | chr1:24638793-24641222 REVERSE LENGTH=704;; (*ITAG) Solyc11g011560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4628796-4631184 transcript_region:SL2.40ch11:4628796..4631184+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00043717g0003.1 protein AED:0.42 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-60) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=8e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=8e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00043717g0005.1 protein AED:0.44 eAED:0.59 QI:0|0|0|1|1|1|2|0|95; (*GB) gi|20149052|gb|AAM12781.1| (e_value=4e-27) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29450.1 (e_value=3e-12) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10305981-10306406 REVERSE LENGTH=141;; (*ITAG) Solyc10g052530.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48389880-48390317 transcript_region:SL2.40ch10:48389880..48390317- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00043717g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|20149044|gb|AAM12777.1| (e_value=7e-38) putative auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-29) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18020.1 (e_value=2e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5966305-5966580 REVERSE LENGTH=91;; (*ITAG) Solyc11g011680.1.1 (e_value=6e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4703254-4703532 transcript_region:SL2.40ch11:4703254..4703532+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00012704g0011.1 protein AED:0.22 eAED:0.21 QI:187|1|0.90|1|0.7|0.81|11|767|378; (*GB) gi|225449158|ref|XP_002278274.1| (e_value=1e-168) PREDICTED: Golgi to ER traffic protein 4 homolog [Vitis vinifera];; (*SWP) sp|Q54TH4|GET4_DICDI (e_value=4e-31) Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1;; (*TAIR) AT5G63220.1 (e_value=6e-139) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr5:25353256-25355410 REVERSE LENGTH=324;; (*ITAG) Solyc12g017820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7439542-7444845 transcript_region:SL2.40ch12:7439542..7444845+ go_terms:GO:0005515 functional_description:"DUF410 domain protein (AHRD V1 **-- A1CM30_ASPCL); contains Interpro domain(s) IPR007317 Uncharacterised protein family UPF0363 "; GO:0005515 NbS00012704g0014.1 protein AED:0.24 eAED:0.24 QI:165|0.83|0.61|1|1|1|13|0|475; (*GB) gi|82623395|gb|ABB87112.1| (e_value=0.0) GDP dissociation inhibitor 1-like [Solanum tuberosum];; (*SWP) sp|P21856|GDIA_BOVIN (e_value=4e-152) Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1;; (*TAIR) AT2G44100.1 (e_value=0.0) | Symbols: ATGDI1, AT-GDI1, GDI1 | guanosine nucleotide diphosphate dissociation inhibitor 1 | chr2:18241804-18244864 FORWARD LENGTH=445;; (*ITAG) Solyc12g017570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6863578-6870564 transcript_region:SL2.40ch12:6863578..6870564+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab GDP dissociation inhibitor (AHRD V1 **** C0LSK7_NICBE); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00012704g0009.1 protein AED:0.34 eAED:0.72 QI:0|0|0|1|1|1|2|0|95 NbS00005814g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|357513435|ref|XP_003627006.1| (e_value=1e-62) hypothetical protein MTR_8g013990 [Medicago truncatula];; (*TAIR) AT5G25840.1 (e_value=1e-52) | Symbols: | Protein of unknown function (DUF1677) | chr5:9010909-9011430 REVERSE LENGTH=173;; (*ITAG) Solyc08g066450.1.1 (e_value=9e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52303231-52303794 transcript_region:SL2.40ch08:52303231..52303794+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00019379g0012.1 protein AED:0.05 eAED:0.07 QI:0|1|0.83|1|1|1|6|134|301; (*GB) gi|225458467|ref|XP_002282153.1| (e_value=1e-66) PREDICTED: probable transcription factor KAN4-like [Vitis vinifera];; (*SWP) sp|Q9FJV5|KAN4_ARATH (e_value=7e-62) Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1;; (*TAIR) AT5G42630.1 (e_value=5e-63) | Symbols: KAN4, ATS | Homeodomain-like superfamily protein | chr5:17073997-17075747 REVERSE LENGTH=276;; (*ITAG) Solyc04g079600.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:61614216-61617588 transcript_region:SL2.40ch04:61614216..61617588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 *-** Q84NK2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00019379g0013.1 protein AED:0.32 eAED:0.41 QI:86|0.4|0.33|1|0.6|0.83|6|0|200 NbS00030504g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.6|1|1|1|10|38|949; (*GB) gi|225434877|ref|XP_002283191.1| (e_value=0.0) PREDICTED: pumilio homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9ZW07|PUM1_ARATH (e_value=0.0) Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=2 SV=1;; (*TAIR) AT2G29200.1 (e_value=0.0) | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968;; (*ITAG) Solyc06g005670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:735456-743778 transcript_region:SL2.40ch06:735456..743778+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00030504g0011.1 protein AED:0.56 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|356538984|ref|XP_003537980.1| (e_value=1e-26) PREDICTED: pumilio homolog 2-like [Glycine max];; (*SWP) sp|Q9ZW06|PUM2_ARATH (e_value=7e-19) Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1;; (*TAIR) AT2G29190.2 (e_value=6e-20) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972;; (*ITAG) Solyc06g076340.2.1 (e_value=7e-27) genomic_reference:SL2.40ch06 gene_region:43818114-43826901 transcript_region:SL2.40ch06:43818114..43826901+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00056205g0006.1 protein AED:0.32 eAED:0.32 QI:276|0.81|0.83|1|0.54|0.58|12|321|303; (*GB) gi|68131815|gb|AAY85186.1| (e_value=3e-170) pyridoxal kinase [Solanum tuberosum];; (*SWP) sp|Q8W1X2|PDXK_ARATH (e_value=2e-146) Pyridoxal kinase OS=Arabidopsis thaliana GN=PK PE=1 SV=2;; (*TAIR) AT5G37850.2 (e_value=1e-147) | Symbols: SOS4 | pfkB-like carbohydrate kinase family protein | chr5:15065621-15068783 FORWARD LENGTH=309;; (*ITAG) Solyc02g091340.2.1 (e_value=2e-174) genomic_reference:SL2.40ch02 gene_region:47241318-47251478 transcript_region:SL2.40ch02:47241318..47251478- go_terms:GO:0008478 functional_description:"Pyridoxal kinase (AHRD V1 **** Q4JR84_SOLTU); contains Interpro domain(s) IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase "; GO:0008478 NbS00030095g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|1|1|3|0|124; (*ITAG) Solyc05g009970.2.1 (e_value=3e-23) genomic_reference:SL2.40ch05 gene_region:4174318-4176026 transcript_region:SL2.40ch05:4174318..4176026+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030095g0005.1 protein AED:0.14 eAED:0.14 QI:300|0.85|0.75|1|1|1|8|368|607; (*GB) gi|225423849|ref|XP_002281060.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242198 [Vitis vinifera];; (*SWP) sp|Q9BX40|LS14B_HUMAN (e_value=2e-25) Protein LSM14 homolog B OS=Homo sapiens GN=LSM14B PE=1 SV=1;; (*TAIR) AT1G26110.2 (e_value=4e-82) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc05g009980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4176174-4183453 transcript_region:SL2.40ch05:4176174..4183453- functional_description:"Protein LSM14 homolog B (AHRD V1 *--- LS14B_MOUSE); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00043358g0008.1 protein AED:0.24 eAED:0.24 QI:120|1|1|1|1|1|5|587|241; (*GB) gi|359475370|ref|XP_003631670.1| (e_value=3e-19) PREDICTED: uncharacterized protein LOC100854716 [Vitis vinifera];; (*ITAG) Solyc01g108100.2.1 (e_value=8e-89) genomic_reference:SL2.40ch01 gene_region:87218577-87223859 transcript_region:SL2.40ch01:87218577..87223859+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005187g0006.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|83283979|gb|ABC01897.1| (e_value=0.0) protein transport SEC13-like protein [Solanum tuberosum];; (*SWP) sp|Q5XFW8|SEC13_RAT (e_value=2e-105) Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1;; (*TAIR) AT2G30050.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc02g087300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44325520-44326428 transcript_region:SL2.40ch02:44325520..44326428+ go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00005187g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.66|1|1|0.66|0.5|4|455|377; (*GB) gi|13374872|emb|CAC34506.1| (e_value=3e-154) mannosyltransferase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=1e-105) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1;; (*TAIR) AT5G22130.1 (e_value=8e-107) | Symbols: PNT1 | mannosyltransferase family protein | chr5:7337486-7339831 REVERSE LENGTH=450;; (*ITAG) Solyc02g083260.2.1 (e_value=7e-159) genomic_reference:SL2.40ch02 gene_region:41291406-41294442 transcript_region:SL2.40ch02:41291406..41294442- go_terms:GO:0051751 functional_description:"GPI mannosyltransferase 1 (AHRD V1 **** A8NEB2_COPC7); contains Interpro domain(s) IPR007704 Mannosyltransferase, DXD "; GO:0051751 NbS00005187g0016.1 protein AED:0.19 eAED:0.19 QI:0|0.77|0.8|0.9|0.55|0.6|10|552|327; (*GB) gi|225452644|ref|XP_002281897.1| (e_value=5e-92) PREDICTED: E2F transcription factor-like E2FE [Vitis vinifera];; (*SWP) sp|Q8RWL0|E2FF_ARATH (e_value=2e-67) E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF PE=2 SV=1;; (*TAIR) AT3G01330.1 (e_value=1e-68) | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 | chr3:124596-126805 REVERSE LENGTH=354;; (*ITAG) Solyc02g087310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44330413-44334778 transcript_region:SL2.40ch02:44330413..44334778+ go_terms:GO:0003677 functional_description:"E2F transcription factor-like protein (AHRD V1 ***- Q9LFQ9_ARATH); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003677 NbS00005187g0019.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0.5|0.66|3|0|303; (*GB) gi|365222904|gb|AEW69804.1| (e_value=2e-107) Hop-interacting protein THI043 [Solanum lycopersicum];; (*TAIR) AT5G14970.1 (e_value=7e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits to 397 proteins in 95 species: Archae - 0; Bacteria - 294; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:4847368-4848760 FORWARD LENGTH=355;; (*ITAG) Solyc02g087340.2.1 (e_value=3e-110) genomic_reference:SL2.40ch02 gene_region:44349601-44352908 transcript_region:SL2.40ch02:44349601..44352908+ functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00005187g0023.1 protein AED:0.37 eAED:0.38 QI:33|0.62|0.66|1|0.5|0.44|9|0|395; (*GB) gi|224133580|ref|XP_002327630.1| (e_value=4e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=1e-12) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1;; (*TAIR) AT4G35760.1 (e_value=2e-109) | Symbols: | NAD(P)H dehydrogenase (quinone)s | chr4:16942733-16944622 REVERSE LENGTH=376;; (*ITAG) Solyc02g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41295332-41300101 transcript_region:SL2.40ch02:41295332..41300101- functional_description:"Vitamin K epoxide reductase (AHRD V1 **-- B4AXQ4_9CHRO); contains Interpro domain(s) IPR012932 Vitamin K epoxide reductase "; NbS00005187g0024.1 protein AED:0.58 eAED:0.58 QI:118|1|0.5|1|1|1|2|0|84; (*GB) gi|255561866|ref|XP_002521942.1| (e_value=3e-40) 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis];; (*SWP) sp|Q93YP7|4HPT_ARATH (e_value=6e-31) 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1;; (*TAIR) AT4G23660.2 (e_value=4e-32) | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | chr4:12328086-12331359 REVERSE LENGTH=407;; (*ITAG) Solyc03g114300.2.1 (e_value=1e-46) genomic_reference:SL2.40ch03 gene_region:58362391-58366660 transcript_region:SL2.40ch03:58362391..58366660+ go_terms:GO:0008412 functional_description:"4-hydroxybenzoate octaprenyltransferase (AHRD V1 **** Q2RWW9_RHORT); contains Interpro domain(s) IPR006370 4-hydroxybenzoate polyprenyl transferase "; GO:0008412 NbS00005187g0005.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|290; (*GB) gi|12003394|gb|AAG43554.1|AF211536_1 (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum];; (*SWP) sp|Q9LHD2|GATLA_ARATH (e_value=5e-160) Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1;; (*TAIR) AT3G28340.1 (e_value=4e-161) | Symbols: GATL10 | galacturonosyltransferase-like 10 | chr3:10589396-10590493 REVERSE LENGTH=365;; (*ITAG) Solyc02g087350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44354006-44355106 transcript_region:SL2.40ch02:44354006..44355106- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00005187g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|1|3|378|91; (*GB) gi|225425886|ref|XP_002270661.1| (e_value=7e-54) PREDICTED: uncharacterized protein LOC100259604 [Vitis vinifera];; (*TAIR) AT3G48140.1 (e_value=8e-46) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc02g087330.2.1 (e_value=3e-61) genomic_reference:SL2.40ch02 gene_region:44343132-44345022 transcript_region:SL2.40ch02:44343132..44345022- functional_description:"B12D-like protein (AHRD V1 ***- D2XQY6_WOLAR); contains Interpro domain(s) IPR010530 B12D "; NbS00019080g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.6|0.9|0.66|0.7|10|42|376; (*GB) gi|48093455|gb|AAT40104.1| (e_value=0.0) ADH-like UDP-glucose dehydrogenase [Nicotiana tabacum];; (*SWP) sp|P14675|ADH3_SOLTU (e_value=0.0) Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1;; (*TAIR) AT1G77120.1 (e_value=0.0) | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379;; (*ITAG) Solyc06g059740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33996647-33998846 transcript_region:SL2.40ch06:33996647..33998846+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** Q84UY3_PETHY); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00013664g0119.1 protein AED:0.04 eAED:0.04 QI:48|0.5|0.66|1|0.5|1|3|39|561 NbS00013664g0118.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|439 NbS00013664g0121.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|276 NbS00013664g0104.1 protein AED:0.51 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|129 NbS00037328g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.85|1|1|1|7|0|471; (*GB) gi|76803519|gb|ABA55732.1| (e_value=0.0) ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT4G19230.1 (e_value=0.0) | Symbols: CYP707A1 | cytochrome P450, family 707, subfamily A, polypeptide 1 | chr4:10521524-10523517 FORWARD LENGTH=467;; (*ITAG) Solyc08g005610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:477231-479683 transcript_region:SL2.40ch08:477231..479683+ go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00007795g0009.1 protein AED:0.26 eAED:0.28 QI:107|0.6|0.47|1|0.55|0.66|21|0|1194; (*GB) gi|359494661|ref|XP_002264362.2| (e_value=0.0) PREDICTED: TEL2-interacting protein 1 homolog [Vitis vinifera];; (*TAIR) AT1G79190.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:29788639-29794116 FORWARD LENGTH=1335;; (*ITAG) Solyc12g017280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6478972-6496635 transcript_region:SL2.40ch12:6478972..6496635+ go_terms:GO:0005488 functional_description:"Os10g0575800 protein (Fragment) (AHRD V1 ***- Q0IVE5_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00005820g0005.1 protein AED:0.01 eAED:0.01 QI:226|1|1|1|1|1|2|1280|98; (*GB) gi|224134565|ref|XP_002321854.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7T326|CISD2_DANRE (e_value=6e-23) CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio GN=cisd2 PE=2 SV=1;; (*TAIR) AT5G51720.1 (e_value=1e-42) | Symbols: | 2 iron, 2 sulfur cluster binding | chr5:21009645-21010227 FORWARD LENGTH=108;; (*ITAG) Solyc03g007030.2.1 (e_value=7e-64) genomic_reference:SL2.40ch03 gene_region:1570911-1573506 transcript_region:SL2.40ch03:1570911..1573506- go_terms:GO:0042803 functional_description:"CDGSH iron sulfur domain-containing protein 1 (AHRD V1 ***- B5X1R9_SALSA); contains Interpro domain(s) IPR006622 Iron sulphur domain-containing, CDGSH-type, subfamily "; GO:0042803 NbS00031936g0005.1 protein AED:0.11 eAED:0.12 QI:0|0.75|0.6|0.8|1|1|5|0|372; (*GB) gi|24745927|dbj|BAC23045.1| (e_value=1e-140) monooxygenase [Solanum tuberosum];; (*TAIR) AT5G05320.1 (e_value=6e-101) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:1575093-1576679 REVERSE LENGTH=406;; (*ITAG) Solyc08g063130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49980107-49983988 transcript_region:SL2.40ch08:49980107..49983988+ go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00002256g0008.1 protein AED:0.05 eAED:0.05 QI:133|1|1|1|0.25|0.2|5|163|220; (*GB) gi|351723139|ref|NP_001238292.1| (e_value=8e-83) uncharacterized protein LOC100306402 [Glycine max];; (*SWP) sp|Q9LJQ5|RTNLI_ARATH (e_value=8e-60) Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1;; (*TAIR) AT3G18260.1 (e_value=6e-61) | Symbols: | Reticulon family protein | chr3:6260328-6261504 REVERSE LENGTH=225;; (*ITAG) Solyc05g008890.2.1 (e_value=8e-127) genomic_reference:SL2.40ch05 gene_region:3102838-3104660 transcript_region:SL2.40ch05:3102838..3104660- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00002256g0010.1 protein AED:0.34 eAED:0.34 QI:197|1|1|1|0.5|0.66|3|328|194; (*GB) gi|224111620|ref|XP_002315922.1| (e_value=7e-103) predicted protein [Populus trichocarpa];; (*TAIR) AT1G68220.1 (e_value=7e-88) | Symbols: | Protein of unknown function (DUF1218) | chr1:25570322-25571562 FORWARD LENGTH=201;; (*ITAG) Solyc05g008900.2.1 (e_value=6e-121) genomic_reference:SL2.40ch05 gene_region:3110785-3115464 transcript_region:SL2.40ch05:3110785..3115464- go_terms:GO:0005515 functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY4_DATIN); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; GO:0005515 NbS00002256g0012.1 protein AED:0.16 eAED:0.16 QI:134|0.90|0.91|1|0.81|0.83|12|1269|374; (*GB) gi|255570653|ref|XP_002526281.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01220.2 (e_value=0.0) | Symbols: | Nucleotidylyl transferase superfamily protein | chr2:123301-126213 FORWARD LENGTH=388;; (*ITAG) Solyc05g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3092114-3100433 transcript_region:SL2.40ch05:3092114..3100433+ go_terms:GO:0009058 functional_description:"Cytidyltransferase-related (AHRD V1 **-- B4FI85_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0009058 NbS00002256g0014.1 protein AED:0.25 eAED:0.39 QI:0|0|0|1|0|0|2|0|106 NbS00017371g0006.1 protein AED:0.18 eAED:0.28 QI:23|0|0|1|0|0|4|0|306; (*GB) gi|297741148|emb|CBI31879.3| (e_value=3e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=1e-83) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G12260.1 (e_value=1e-84) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395;; (*ITAG) Solyc08g079120.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59926058-59930002 transcript_region:SL2.40ch08:59926058..59930002- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N3P6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00013732g0007.1 protein AED:0.30 eAED:0.30 QI:293|0.71|0.75|1|1|1|8|88|269; (*GB) gi|225431429|ref|XP_002280184.1| (e_value=9e-55) PREDICTED: uncharacterized protein LOC100252414 [Vitis vinifera];; (*TAIR) AT4G16444.1 (e_value=6e-45) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178;; (*ITAG) Solyc02g082710.2.1 (e_value=6e-92) genomic_reference:SL2.40ch02 gene_region:40937858-40942241 transcript_region:SL2.40ch02:40937858..40942241+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035516g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.85|1|1|1|7|0|417; (*GB) gi|225432062|ref|XP_002280604.1| (e_value=0.0) PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera];; (*SWP) sp|P29344|RR1_SPIOL (e_value=0.0) 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1;; (*TAIR) AT5G30510.1 (e_value=0.0) | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416;; (*ITAG) Solyc01g057830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56934925-56939761 transcript_region:SL2.40ch01:56934925..56939761+ go_terms:GO:0005840,GO:0003723 functional_description:"30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0005840,GO:0003723 NbS00010838g0006.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|87; (*GB) gi|81301578|ref|YP_398875.1| (e_value=2e-24) photosystem I assembly protein Ycf4 [Nicotiana tomentosiformis];; (*SWP) sp|Q33C22|YCF4_NICTO (e_value=6e-26) Photosystem I assembly protein Ycf4 OS=Nicotiana tomentosiformis GN=ycf4 PE=3 SV=1;; (*ITAG) ATCG00520.1 (e_value=7e-22) | Symbols: YCF4 | unfolded protein binding | chrC:59772-60326 FORWARD LENGTH=184;; (*ITAG) Solyc01g007360.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:1857130-1857693 transcript_region:SL2.40ch01:1857130..1857693+ go_terms:GO:0016021 functional_description:"Photosystem I assembly protein ycf4 (AHRD V1 ***- Q06R54_9LAMI); contains Interpro domain(s) IPR003359 Photosystem I assembly Ycf4 "; GO:0016021 NbS00010838g0001.1 protein AED:0.74 eAED:0.74 QI:11|0.33|0.25|0.75|1|1|4|0|254; (*GB) gi|225450448|ref|XP_002276424.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]; NbS00010838g0009.1 protein AED:0.14 eAED:0.15 QI:0|0.57|0.5|1|0.71|0.62|8|162|525; (*GB) gi|348659071|gb|AEP82773.1| (e_value=0.0) viridiflorene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=0.0) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=2e-122) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82781170-82783261 transcript_region:SL2.40ch01:82781170..82783261+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00037973g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-67) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=4e-42) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=2e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00037973g0010.1 protein AED:0.03 eAED:0.10 QI:0|0|0|1|0|0|2|0|204; (*ITAG) Solyc07g056380.1.1 (e_value=2e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00044793g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|137; (*GB) gi|358248486|ref|NP_001239634.1| (e_value=6e-62) uncharacterized protein LOC100790275 [Glycine max];; (*TAIR) AT3G51000.1 (e_value=1e-22) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=5e-62) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00032479g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|226; (*GB) gi|224053723|ref|XP_002297947.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=4e-28) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.1 (e_value=3e-29) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=258;; (*ITAG) Solyc08g083130.2.1 (e_value=7e-48) genomic_reference:SL2.40ch08 gene_region:62843229-62844188 transcript_region:SL2.40ch08:62843229..62844188- go_terms:GO:0043565 functional_description:"Homeobox leucine zipper protein (AHRD V1 *-*- B8YIB0_MIRJA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00027483g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|73; (*GB) gi|520916|emb|CAA81748.1| (e_value=1e-41) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q42881|1A13_SOLLC (e_value=3e-42) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=8e-37) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc02g091990.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:47786604-47788405 transcript_region:SL2.40ch02:47786604..47788405- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00013501g0006.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.75|0|0|4|0|172; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-20) hypothetical protein [Nicotiana tabacum]; NbS00011261g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|8|292|520; (*GB) gi|359495207|ref|XP_002263508.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera];; (*SWP) sp|P73530|RS1A_SYNY3 (e_value=7e-30) 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1;; (*TAIR) AT1G71720.1 (e_value=2e-173) | Symbols: | Nucleic acid-binding proteins superfamily | chr1:26983744-26985893 FORWARD LENGTH=500;; (*ITAG) Solyc00g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8793413-8800152 transcript_region:SL2.40ch00:8793413..8800152- go_terms:GO:0003723 functional_description:"30S ribosomal protein S1-like (AHRD V1 ***- Q5ZC75_ORYSJ); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00027707g0001.1 protein AED:0.33 eAED:0.46 QI:216|0.33|0.5|0.75|1|1|4|0|117; (*GB) gi|350539283|ref|NP_001234385.1| (e_value=3e-20) N-carbamoylputrescine amidase [Solanum lycopersicum];; (*SWP) sp|Q9XGI9|AGUB_SOLLC (e_value=7e-22) N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1;; (*TAIR) AT2G27450.1 (e_value=2e-15) | Symbols: NLP1, ATNLP1, CPA | nitrilase-like protein 1 | chr2:11737666-11739577 REVERSE LENGTH=299;; (*ITAG) Solyc11g068540.1.1 (e_value=5e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50313861-50320110 transcript_region:SL2.40ch11:50313861..50320110- go_terms:GO:0006807,GO:0006596 functional_description:"N-carbamoylputrescine amidase (AHRD V1 **-- D3NU88_AZOS1); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase IPR017755 N-carbamoylputrescine amidase "; GO:0006807,GO:0006596 NbS00000370g0015.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.90|0.91|12|225|668; (*GB) gi|359488497|ref|XP_003633767.1| (e_value=0.0) PREDICTED: fidgetin-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q6DDU8|FIGL1_XENLA (e_value=3e-109) Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1;; (*TAIR) AT3G27120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10000248-10003265 REVERSE LENGTH=476;; (*ITAG) Solyc02g094100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49313344-49320142 transcript_region:SL2.40ch02:49313344..49320142+ go_terms:GO:0000287 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- C0S965_PARBP); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0000287 NbS00000370g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|225456303|ref|XP_002279981.1| (e_value=1e-174) PREDICTED: cytochrome P450 94A1-like [Vitis vinifera];; (*SWP) sp|O81117|C94A1_VICSA (e_value=1e-116) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT3G01900.1 (e_value=1e-153) | Symbols: CYP94B2 | cytochrome P450, family 94, subfamily B, polypeptide 2 | chr3:312359-313849 REVERSE LENGTH=496;; (*ITAG) Solyc02g094110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49324283-49325824 transcript_region:SL2.40ch02:49324283..49325824- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000370g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|0.66|0|0.33|3|0|59; (*GB) gi|225423672|ref|XP_002276491.1| (e_value=6e-24) PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera];; (*TAIR) AT1G71270.1 (e_value=1e-25) | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707;; (*ITAG) Solyc02g094090.2.1 (e_value=5e-30) genomic_reference:SL2.40ch02 gene_region:49292983-49310119 transcript_region:SL2.40ch02:49292983..49310119- functional_description:"Vacuolar protein sorting 52 (AHRD V1 **-- Q5TJF1_CANFA); contains Interpro domain(s) IPR007258 Vps52/Sac2 "; NbS00000370g0017.1 protein AED:0.24 eAED:0.24 QI:61|0.88|0.8|1|0.88|0.8|10|265|327; (*GB) gi|326508084|dbj|BAJ86785.1| (e_value=6e-155) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q9S850|SUOX_ARATH (e_value=3e-111) Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1;; (*TAIR) AT3G01910.3 (e_value=1e-115) | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr3:314919-317053 REVERSE LENGTH=241;; (*ITAG) Solyc02g094120.2.1 (e_value=4e-136) genomic_reference:SL2.40ch02 gene_region:49329238-49336140 transcript_region:SL2.40ch02:49329238..49336140- go_terms:GO:0008482 functional_description:"Sulfite oxidase (AHRD V1 **** A5H1Q7_SOLLC); contains Interpro domain(s) IPR000572 Oxidoreductase, molybdopterin binding "; GO:0008482 NbS00000370g0101.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|329 NbS00000370g0121.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|325 NbS00000370g0105.1 protein AED:0.12 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|477 NbS00000370g0120.1 protein AED:0.18 eAED:0.21 QI:21|0.83|0.71|1|1|1|7|0|267 NbS00000370g0119.1 protein AED:0.37 eAED:0.37 QI:0|1|0.5|1|1|1|4|0|147 NbS00000370g0124.1 protein AED:0.32 eAED:0.32 QI:0|1|0.75|1|0.66|0.5|4|0|253 NbS00000370g0123.1 protein AED:0.38 eAED:0.40 QI:129|0.66|0.71|1|0.66|0.71|7|0|327 NbS00000370g0128.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|170 NbS00000370g0130.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|152 NbS00000370g0131.1 protein AED:0.40 eAED:0.46 QI:0|0|0|1|0|0|2|0|92 NbS00000370g0214.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.66|3|0|216 NbS00000370g0209.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|153 NbS00000370g0218.1 protein AED:0.06 eAED:0.15 QI:22|0.66|0|1|0.33|0.5|4|0|511 NbS00000370g0201.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|162 NbS00000370g0216.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|0|0|3|0|111 NbC23951406g0001.1 protein AED:0.33 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=3e-39) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|O80983|FTSH4_ARATH (e_value=4e-38) ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2;; (*TAIR) AT2G26140.1 (e_value=3e-39) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc11g069950.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51629743-51639001 transcript_region:SL2.40ch11:51629743..51639001+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00003255g0007.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|461; (*GB) gi|147805065|emb|CAN69181.1| (e_value=5e-90) hypothetical protein VITISV_004338 [Vitis vinifera];; (*SWP) sp|A5WVX1|MET13_DANRE (e_value=1e-12) Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1;; (*TAIR) AT5G04610.1 (e_value=3e-72) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1325612-1326916 REVERSE LENGTH=434;; (*ITAG) Solyc11g007550.1.1 (e_value=4e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1800785-1802188 transcript_region:SL2.40ch11:1800785..1802188+ functional_description:"Methyltransferase (AHRD V1 ***- D0N411_PHYIN)"; NbS00003255g0005.1 protein AED:0.10 eAED:0.10 QI:261|1|1|1|1|1|3|75|268; (*GB) gi|359480971|ref|XP_002264699.2| (e_value=8e-63) PREDICTED: protein LURP-one-related 5-like [Vitis vinifera];; (*SWP) sp|Q9SSC7|LOR5_ARATH (e_value=1e-22) Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1;; (*TAIR) AT1G80120.1 (e_value=1e-23) | Symbols: | Protein of unknown function (DUF567) | chr1:30139198-30139986 FORWARD LENGTH=210;; (*ITAG) Solyc09g005210.2.1 (e_value=1e-111) genomic_reference:SL2.40ch09 gene_region:172167-173177 transcript_region:SL2.40ch09:172167..173177+ go_terms:GO:0005515 functional_description:"GTP binding protein (AHRD V1 **** B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; GO:0005515 NbS00033749g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|290; (*GB) gi|225464848|ref|XP_002271636.1| (e_value=3e-133) PREDICTED: probable CCR4-associated factor 1 homolog 9-like [Vitis vinifera];; (*SWP) sp|Q9LXM2|CAF1I_ARATH (e_value=2e-125) Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1;; (*TAIR) AT3G44260.1 (e_value=1e-126) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:15952213-15953055 REVERSE LENGTH=280;; (*ITAG) Solyc01g007840.2.1 (e_value=1e-150) genomic_reference:SL2.40ch01 gene_region:2006792-2007838 transcript_region:SL2.40ch01:2006792..2007838- go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00033749g0009.1 protein AED:0.20 eAED:0.20 QI:118|0|0.66|1|0|0|3|804|938; (*GB) gi|359484317|ref|XP_003633097.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=3e-172) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT4G13650.1 (e_value=2e-173) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064;; (*ITAG) Solyc01g007850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2011260-2014397 transcript_region:SL2.40ch01:2011260..2014397+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016397g0013.1 protein AED:0.32 eAED:0.33 QI:0|0.6|0.5|1|0.6|0.33|6|401|532; (*GB) gi|343887277|dbj|BAK61823.1| (e_value=0.0) protein phosphatase 2c [Citrus unshiu];; (*SWP) sp|Q0JLP9|P2C06_ORYSJ (e_value=3e-160) Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1;; (*TAIR) AT1G72770.3 (e_value=1e-149) | Symbols: HAB1 | homology to ABI1 | chr1:27390998-27392851 FORWARD LENGTH=511;; (*ITAG) Solyc12g096020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63439852-63442361 transcript_region:SL2.40ch12:63439852..63442361- go_terms:GO:0004722,GO:0008022 functional_description:"Protein phosphatase 2C (AHRD V1 **** A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00016397g0010.1 protein AED:0.14 eAED:0.14 QI:127|0.94|1|1|0.94|0.94|18|367|815; (*GB) gi|225429582|ref|XP_002280239.1| (e_value=0.0) PREDICTED: puromycin-sensitive aminopeptidase [Vitis vinifera];; (*SWP) sp|Q11011|PSA_MOUSE (e_value=0.0) Puromycin-sensitive aminopeptidase OS=Mus musculus GN=Npepps PE=1 SV=2;; (*TAIR) AT4G33090.1 (e_value=0.0) | Symbols: APM1, ATAPM1 | aminopeptidase M1 | chr4:15965915-15970418 REVERSE LENGTH=879;; (*ITAG) Solyc08g062630.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48821743-48831500 transcript_region:SL2.40ch08:48821743..48831500+ go_terms:GO:0070006 functional_description:"Aminopeptidase-like protein (AHRD V1 ***- Q9SN00_ARATH); contains Interpro domain(s) IPR015568 Peptidase M1, puromycin-sensitive aminopeptidase "; GO:0070006 NbS00016397g0012.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0.33|3|0|166; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-56) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016397g0011.1 protein AED:0.39 eAED:0.39 QI:18|0|0|1|0|0|2|0|128; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-35) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00001896g0023.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.66|3|0|661; (*GB) gi|350534406|ref|NP_001233883.1| (e_value=0.0) receptor-like protein kinase precursor [Solanum lycopersicum];; (*SWP) sp|C0LGU0|RLK_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1;; (*TAIR) AT5G35390.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:13596918-13598976 FORWARD LENGTH=662;; (*ITAG) Solyc05g047570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58181092-58184477 transcript_region:SL2.40ch05:58181092..58184477- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00001896g0002.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|262; (*GB) gi|356547277|ref|XP_003542042.1| (e_value=1e-117) PREDICTED: D-inositol-3-phosphate glycosyltransferase-like [Glycine max];; (*TAIR) AT5G59070.1 (e_value=4e-113) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:23845237-23847329 FORWARD LENGTH=505;; (*ITAG) Solyc05g047560.1.1 (e_value=7e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:58176982-58178496 transcript_region:SL2.40ch05:58176982..58178496- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** Q3SM08_THIDA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00001896g0024.1 protein AED:0.24 eAED:0.26 QI:0|0.55|0.5|0.9|0.77|0.8|10|0|798; (*GB) gi|359476012|ref|XP_003631778.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=7e-111) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc05g047550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58170231-58175034 transcript_region:SL2.40ch05:58170231..58175034- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00001896g0032.1 protein AED:0.34 eAED:0.34 QI:165|0.87|0.77|1|0.75|0.66|9|431|225; (*GB) gi|3024440|sp|P93395.1|PSB6_TOBAC (e_value=1e-151) RecName: Full=Proteasome subunit beta type-6; AltName: Full=Proteasome delta chain; AltName: Full=Tobacco cryptogein-induced protein 7; Short=tcI 7; Flags: Precursor;; (*SWP) sp|P93395|PSB6_TOBAC (e_value=3e-153) Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G31300.3 (e_value=6e-137) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233;; (*ITAG) Solyc07g016200.2.1 (e_value=2e-144) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00001896g0033.1 protein AED:0.20 eAED:0.20 QI:87|0.5|0.66|1|0.5|0.66|3|273|476; (*GB) gi|225445658|ref|XP_002265876.1| (e_value=4e-158) PREDICTED: pentatricopeptide repeat-containing protein At3g42630 [Vitis vinifera];; (*SWP) sp|Q9M2A1|PP263_ARATH (e_value=4e-128) Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2;; (*TAIR) AT3G42630.1 (e_value=3e-129) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:14722314-14723635 FORWARD LENGTH=415;; (*ITAG) Solyc05g047540.2.1 (e_value=9e-180) genomic_reference:SL2.40ch05 gene_region:58163573-58166944 transcript_region:SL2.40ch05:58163573..58166944+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- Q287V2_9BRAS); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001896g0027.1 protein AED:0.27 eAED:0.29 QI:0|0.9|0.81|1|0.9|1|11|0|545; (*GB) gi|297736019|emb|CBI24057.3| (e_value=1e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CZU3|SK2L2_MOUSE (e_value=2e-71) Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1;; (*TAIR) AT2G06990.1 (e_value=1e-162) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995;; (*ITAG) Solyc05g047520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58151405-58159646 transcript_region:SL2.40ch05:58151405..58159646+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00001896g0031.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|3|0|316; (*GB) gi|14423323|gb|AAK62344.1| (e_value=1e-175) elicitor-inducible cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|P48522|TCMO_CATRO (e_value=3e-102) Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=4e-89) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=1e-142) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00001896g0030.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|215; (*GB) gi|14423325|gb|AAK62345.1| (e_value=2e-95) elicitor-inducible cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|P37115|TCMO_VIGRR (e_value=5e-50) Trans-cinnamate 4-monooxygenase OS=Vigna radiata var. radiata GN=CYP73A2 PE=1 SV=1;; (*TAIR) AT2G30490.1 (e_value=7e-49) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=7e-90) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00001896g0034.1 protein AED:0.43 eAED:0.51 QI:74|0|0|1|0|0|2|0|152; (*GB) gi|359484919|ref|XP_002266524.2| (e_value=9e-90) PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera];; (*SWP) sp|Q9CZU3|SK2L2_MOUSE (e_value=8e-75) Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1;; (*TAIR) AT2G06990.1 (e_value=2e-88) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995;; (*ITAG) Solyc05g047520.2.1 (e_value=2e-94) genomic_reference:SL2.40ch05 gene_region:58151405-58159646 transcript_region:SL2.40ch05:58151405..58159646+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00055701g0002.1 protein AED:0.04 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|94; (*ITAG) Solyc04g017740.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:7960336-7960611 transcript_region:SL2.40ch04:7960336..7960611- functional_description:"Unknown Protein (AHRD V1)"; NbS00055701g0010.1 protein AED:0.05 eAED:0.10 QI:0|0.33|0|1|0.66|0.5|4|0|1265; (*GB) gi|17933110|gb|AAL48201.1|AF378084_1 (e_value=0.0) PNCBP [Solanum tuberosum];; (*TAIR) AT5G04020.1 (e_value=1e-25) | Symbols: | calmodulin binding | chr5:1081980-1086546 REVERSE LENGTH=1495;; (*ITAG) Solyc04g017750.2.1 (e_value=5e-152) genomic_reference:SL2.40ch04 gene_region:7961924-7966482 transcript_region:SL2.40ch04:7961924..7966482- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *--- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbC23891506g0001.1 protein AED:0.01 eAED:0.01 QI:6|1|0.5|1|0|0|2|0|51; (*GB) gi|255589971|ref|XP_002535143.1| (e_value=2e-27) hypothetical protein RCOM_2032310 [Ricinus communis];; (*SWP) sp|Q5KQN0|CAX2_ORYSJ (e_value=2e-27) Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2;; (*TAIR) AT1G55730.2 (e_value=4e-27) | Symbols: ATCAX5, CAX5 | cation exchanger 5 | chr1:20831387-20833941 REVERSE LENGTH=441;; (*ITAG) Solyc03g123790.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:64570614-64575806 transcript_region:SL2.40ch03:64570614..64575806- go_terms:GO:0015369 functional_description:"Calcium/proton exchanger (AHRD V1 **** C4JVH2_UNCRE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0015369 NbS00032698g0005.1 protein AED:0.10 eAED:0.10 QI:155|1|0.75|1|0.33|0.5|4|0|332; (*GB) gi|14485511|emb|CAC42086.1| (e_value=0.0) putative peroxidase [Solanum tuberosum];; (*SWP) sp|Q43873|PER73_ARATH (e_value=4e-165) Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1;; (*TAIR) AT5G67400.1 (e_value=3e-166) | Symbols: RHS19 | root hair specific 19 | chr5:26894896-26896300 FORWARD LENGTH=329;; (*ITAG) Solyc02g092580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48204940-48207481 transcript_region:SL2.40ch02:48204940..48207481- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** A0S5Z4_SESIN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00052371g0004.1 protein AED:0.41 eAED:0.45 QI:301|0.5|0.33|1|0|0|3|0|27 NbS00052371g0003.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|1|1|2|979|85; (*ITAG) Solyc01g005180.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:147437-147712 transcript_region:SL2.40ch01:147437..147712- functional_description:"Unknown Protein (AHRD V1)"; NbS00024607g0004.1 protein AED:0.13 eAED:0.14 QI:0|0.77|0.6|1|0.77|0.8|10|0|1070; (*GB) gi|224059074|ref|XP_002299703.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q92771|DDX12_HUMAN (e_value=5e-106) Putative ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12P PE=5 SV=3;; (*TAIR) AT1G79890.1 (e_value=0.0) | Symbols: | RAD3-like DNA-binding helicase protein | chr1:30048655-30052203 FORWARD LENGTH=882;; (*ITAG) Solyc06g066670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38277655-38284362 transcript_region:SL2.40ch06:38277655..38284362+ go_terms:GO:0043141 functional_description:"ATP-dependent DNA helicase Ta0057 (AHRD V1 *-** XPD_THEAC); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type "; GO:0043141 NbS00036298g0007.1 protein AED:0.28 eAED:0.64 QI:0|0|0|1|1|1|2|0|93; (*GB) gi|297746476|emb|CBI16532.3| (e_value=1e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19820.1 (e_value=1e-24) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00036298g0008.1 protein AED:0.72 eAED:0.72 QI:3|0.5|0|0.66|0|0.66|3|0|111; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=6e-18) importin beta-3, putative [Ricinus communis];; (*TAIR) AT5G19820.1 (e_value=6e-20) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-22) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00004356g0004.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|1|1|5|0|436; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=7e-148) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=5e-149) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00004356g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=4e-50) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=5e-30) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT1G49760.2 (e_value=3e-38) | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671;; (*ITAG) Solyc12g088720.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00038536g0007.1 protein AED:0.30 eAED:0.30 QI:83|0.66|0.5|1|0.66|0.5|4|291|207; (*GB) gi|225461526|ref|XP_002285149.1| (e_value=3e-51) PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ASV6|RR20_ARATH (e_value=3e-39) 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=1 SV=1;; (*TAIR) AT3G15190.1 (e_value=2e-40) | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116216-5117412 FORWARD LENGTH=202;; (*ITAG) Solyc07g062870.2.1 (e_value=2e-72) genomic_reference:SL2.40ch07 gene_region:62729882-62733164 transcript_region:SL2.40ch07:62729882..62733164+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S20 (AHRD V1 *-*- RS20_THEEB); contains Interpro domain(s) IPR002583 Ribosomal protein S20 "; GO:0005840 NbS00003243g0003.1 protein AED:0.30 eAED:0.30 QI:76|1|0.93|1|0.85|0.86|15|174|418; (*GB) gi|225447195|ref|XP_002277197.1| (e_value=0.0) PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8L3X9|KASM_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1;; (*TAIR) AT2G04540.1 (e_value=0.0) | Symbols: | Beta-ketoacyl synthase | chr2:1581521-1584635 REVERSE LENGTH=461;; (*ITAG) Solyc07g049570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57229419-57239024 transcript_region:SL2.40ch07:57229419..57239024+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase (AHRD V1 **** Q2W5G3_MAGSA); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00004723g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|359496981|ref|XP_003635389.1| (e_value=6e-84) PREDICTED: uncharacterized protein LOC100854561 [Vitis vinifera];; (*TAIR) AT4G35680.1 (e_value=3e-35) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16917938-16919749 FORWARD LENGTH=503;; (*ITAG) Solyc02g082980.1.1 (e_value=9e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41150273-41151151 transcript_region:SL2.40ch02:41150273..41151151+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00032476g0009.1 protein AED:0.13 eAED:0.13 QI:625|0.93|0.93|1|0.73|0.75|16|1411|674; (*GB) gi|255568924|ref|XP_002525432.1| (e_value=0.0) casein kinase, putative [Ricinus communis];; (*SWP) sp|P42158|KC1D_ARATH (e_value=4e-37) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT3G03940.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr3:1014412-1018244 REVERSE LENGTH=701;; (*ITAG) Solyc10g080700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032476g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.75|1|0.66|0.5|4|275|441; (*GB) gi|297739757|emb|CBI29939.3| (e_value=4e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FK51|GALT_ARATH (e_value=3e-110) Probable galactose-1-phosphate uridyltransferase OS=Arabidopsis thaliana GN=At5g18200 PE=1 SV=1;; (*TAIR) AT5G18200.1 (e_value=3e-111) | Symbols: | UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases | chr5:6015270-6016555 FORWARD LENGTH=351;; (*ITAG) Solyc10g050850.1.1 (e_value=3e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46437650-46445766 transcript_region:SL2.40ch10:46437650..46445766- go_terms:GO:0047345,GO:0017103 functional_description:"Galactose-1-phosphate uridylyltransferase (AHRD V1 **** A5C6V7_VITVI); contains Interpro domain(s) IPR001937 Galactose-1-phosphate uridyl transferase, class I "; GO:0047345,GO:0017103 NbS00010908g0003.1 protein AED:0.15 eAED:0.15 QI:269|0.88|1|1|0.88|0.8|10|192|514; (*GB) gi|359479655|ref|XP_003632320.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Vitis vinifera];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT3G63240.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:23364411-23366876 REVERSE LENGTH=547;; (*ITAG) Solyc09g065480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59188535-59191538 transcript_region:SL2.40ch09:59188535..59191538- go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 ***- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00033954g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|1|1|5|133|406; (*GB) gi|224136005|ref|XP_002322215.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5M8|PLY18_ARATH (e_value=0.0) Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2;; (*TAIR) AT4G24780.2 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12770631-12772227 REVERSE LENGTH=408;; (*ITAG) Solyc03g111690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56396337-56398488 transcript_region:SL2.40ch03:56396337..56398488+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00033954g0001.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|512; (*GB) gi|24421095|dbj|BAC07504.2| (e_value=0.0) receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=4e-162) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=3e-163) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc06g071810.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40623953-40625830 transcript_region:SL2.40ch06:40623953..40625830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00033954g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|24421095|dbj|BAC07504.2| (e_value=3e-94) receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=8e-78) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=6e-79) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc06g071810.1.1 (e_value=9e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40623953-40625830 transcript_region:SL2.40ch06:40623953..40625830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00040971g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|356496637|ref|XP_003517172.1| (e_value=2e-41) PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=4e-36) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT2G17880.1 (e_value=9e-39) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160;; (*ITAG) Solyc02g062160.1.1 (e_value=8e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28313777-28314241 transcript_region:SL2.40ch02:28313777..28314241- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00019483g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|0.5|0.66|3|0|321; (*GB) gi|321268071|gb|ADW78838.1| (e_value=0.0) galactinol synthase [Solanum commersonii];; (*SWP) sp|Q5UNW1|YR707_MIMIV (e_value=3e-16) Uncharacterized protein R707 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R707 PE=4 SV=1;; (*TAIR) AT2G47180.1 (e_value=7e-144) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc01g100830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82512961-82514071 transcript_region:SL2.40ch01:82512961..82514071+ go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- Q947G8_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00019483g0006.1 protein AED:0.34 eAED:0.40 QI:46|0.66|0.5|1|0.33|0.75|4|0|154; (*GB) gi|357521045|ref|XP_003630811.1| (e_value=1e-90) Trafficking protein particle complex subunit [Medicago truncatula];; (*SWP) sp|Q54UU1|TPPC4_DICDI (e_value=4e-43) Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1;; (*TAIR) AT5G02280.1 (e_value=8e-91) | Symbols: | SNARE-like superfamily protein | chr5:469377-470129 FORWARD LENGTH=141;; (*ITAG) Solyc01g100840.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:82514405-82519439 transcript_region:SL2.40ch01:82514405..82519439- go_terms:GO:0005515 functional_description:"Trafficking protein particle complex subunit 4 (AHRD V1 ***- B6U8Z1_MAIZE); contains Interpro domain(s) IPR007233 Sybindin-like protein "; GO:0005515 NbS00007063g0007.1 protein AED:0.08 eAED:0.11 QI:0|0.2|0.16|1|0.6|0.5|6|0|509; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=8e-162) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=6e-163) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc09g008720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2157113-2159992 transcript_region:SL2.40ch09:2157113..2159992+ go_terms:GO:0003824 functional_description:"Ethylene receptor (AHRD V1 *--- C0ILN8_COFCA); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00007063g0006.1 protein AED:0.35 eAED:0.35 QI:0|0.66|1|1|0.66|0.75|4|184|268; (*GB) gi|255568647|ref|XP_002525297.1| (e_value=4e-89) GTP-binding protein engB, putative [Ricinus communis];; (*SWP) sp|O81004|Y2287_ARATH (e_value=2e-88) GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2;; (*TAIR) AT2G22870.1 (e_value=1e-89) | Symbols: EMB2001 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:9739476-9740921 FORWARD LENGTH=300;; (*ITAG) Solyc09g008730.2.1 (e_value=2e-110) genomic_reference:SL2.40ch09 gene_region:2160719-2165502 transcript_region:SL2.40ch09:2160719..2165502+ go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein (AHRD V1 **** B4FR01_MAIZE); contains Interpro domain(s) IPR019987 GTP-binding protein, ribosome biogenesis, YsxC "; GO:0043022,GO:0003924 NbS00022816g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|225448417|ref|XP_002271819.1| (e_value=2e-14) PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera];; (*ITAG) Solyc09g090620.1.1 (e_value=9e-90) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65425945-65426544 transcript_region:SL2.40ch09:65425945..65426544+ functional_description:"CC-NBS-LRR class disease resistance protein (AHRD V1 ***- C6FF62_SOYBN)"; NbS00022816g0007.1 protein AED:0.16 eAED:0.19 QI:0|0|0|0.71|1|0.85|7|0|586; (*GB) gi|147864337|emb|CAN83006.1| (e_value=0.0) hypothetical protein VITISV_003700 [Vitis vinifera];; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=2e-145) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2;; (*TAIR) AT3G04380.1 (e_value=2e-146) | Symbols: SUVR4, SDG31 | SET-domain containing protein lysine methyltransferase family protein | chr3:1161602-1164539 FORWARD LENGTH=492;; (*ITAG) Solyc09g090630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65427645-65432748 transcript_region:SL2.40ch09:65427645..65432748- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00027748g0001.1 protein AED:0.01 eAED:0.01 QI:70|1|1|1|1|1|6|353|193; (*GB) gi|224083048|ref|XP_002306937.1| (e_value=6e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24175.1 (e_value=8e-57) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12547018-12548810 FORWARD LENGTH=306;; (*ITAG) Solyc04g081540.2.1 (e_value=4e-95) genomic_reference:SL2.40ch04 gene_region:63073475-63077797 transcript_region:SL2.40ch04:63073475..63077797+ functional_description:"Kinesin heavy chain isolog (AHRD V1 ***- B6TA17_MAIZE); contains Interpro domain(s) IPR006839 Uncharacterised protein family UPF0307 "; NbS00025726g0002.1 protein AED:0.13 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|350538485|ref|NP_001234345.1| (e_value=2e-41) self-pruning G-box protein [Solanum lycopersicum];; (*TAIR) AT2G17770.1 (e_value=2e-14) | Symbols: ATBZIP27, FDP, BZIP27 | basic region/leucine zipper motif 27 | chr2:7723103-7723573 FORWARD LENGTH=156;; (*ITAG) Solyc02g083520.2.1 (e_value=4e-44) genomic_reference:SL2.40ch02 gene_region:41465731-41466655 transcript_region:SL2.40ch02:41465731..41466655+ go_terms:GO:0005515,GO:0016563 functional_description:"BZIP transcription factor (AHRD V1 *-** Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0016563 NbS00025726g0009.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|171 NbS00019569g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|0.5|0.8|5|0|217; (*GB) gi|169908354|gb|ACB05475.1| (e_value=7e-116) LIM domain protein 2b [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=5e-62) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G61230.1 (e_value=5e-103) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213;; (*ITAG) Solyc01g094320.2.1 (e_value=8e-119) genomic_reference:SL2.40ch01 gene_region:77600987-77603710 transcript_region:SL2.40ch01:77600987..77603710- go_terms:GO:0042802 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00019569g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225454190|ref|XP_002272636.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera];; (*TAIR) AT1G01730.1 (e_value=9e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:271002-271872 FORWARD LENGTH=224;; (*ITAG) Solyc05g049880.2.1 (e_value=4e-88) genomic_reference:SL2.40ch05 gene_region:58766954-58775362 transcript_region:SL2.40ch05:58766954..58775362- functional_description:"Unknown Protein (AHRD V1)"; NbS00058057g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0.5|0.66|3|0|498; (*GB) gi|255581657|ref|XP_002531632.1| (e_value=1e-11) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g081650.1.1 (e_value=5e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:61803221-61805947 transcript_region:SL2.40ch08:61803221..61805947- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00010795g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|244|653; (*GB) gi|147857536|emb|CAN80381.1| (e_value=0.0) hypothetical protein VITISV_015320 [Vitis vinifera];; (*SWP) sp|Q86YJ7|AN13B_HUMAN (e_value=1e-31) Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=2 SV=4;; (*TAIR) AT1G04780.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00010795g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.25|0|1|0|0.2|5|0|449; (*GB) gi|225459073|ref|XP_002283776.1| (e_value=7e-141) PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis vinifera];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=8e-53) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT2G18880.1 (e_value=4e-75) | Symbols: VEL2 | vernalization5/VIN3-like | chr2:8176386-8178788 FORWARD LENGTH=529;; (*ITAG) Solyc04g076400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58900908-58905317 transcript_region:SL2.40ch04:58900908..58905317+ go_terms:GO:0005515 functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC)"; GO:0005515 NbS00010795g0011.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|224067132|ref|XP_002302371.1| (e_value=3e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=3e-14) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT4G30200.4 (e_value=1e-16) | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | chr4:14787045-14790070 REVERSE LENGTH=624;; (*ITAG) Solyc04g076400.2.1 (e_value=7e-45) genomic_reference:SL2.40ch04 gene_region:58900908-58905317 transcript_region:SL2.40ch04:58900908..58905317+ go_terms:GO:0005515 functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC)"; GO:0005515 NbS00026613g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|19783|emb|CAA46623.1| (e_value=2e-179) osmotin [Nicotiana tabacum];; (*SWP) sp|P14170|OSMO_TOBAC (e_value=4e-180) Osmotin OS=Nicotiana tabacum GN=AP24 PE=1 SV=2;; (*TAIR) AT4G11650.1 (e_value=1e-111) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc08g080650.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61050423-61051163 transcript_region:SL2.40ch08:61050423..61051163+ go_terms:GO:0005515 functional_description:"Osmotin-like protein (Fragment) (AHRD V1 **-- Q8S4L1_SOLNI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00026613g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.4|0.8|0.75|0.8|5|0|175; (*GB) gi|255537373|ref|XP_002509753.1| (e_value=8e-45) Elicitor-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q0JBH9|ERG3_ORYSJ (e_value=9e-38) Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1;; (*TAIR) AT1G63220.1 (e_value=5e-33) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:23449017-23450244 FORWARD LENGTH=147;; (*ITAG) Solyc08g080680.2.1 (e_value=2e-46) genomic_reference:SL2.40ch08 gene_region:61059432-61062183 transcript_region:SL2.40ch08:61059432..61062183+ functional_description:"Elicitor-responsive protein 3 (AHRD V1 **-- B6U4Y1_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00026613g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|46250719|dbj|BAD15090.1| (e_value=2e-167) pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P25871|OLPA_TOBAC (e_value=2e-168) Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1;; (*TAIR) AT4G11650.1 (e_value=4e-100) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc08g080670.1.1 (e_value=4e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61057123-61057875 transcript_region:SL2.40ch08:61057123..61057875- go_terms:GO:0005515 functional_description:"Osmotin-like protein (Fragment) (AHRD V1 **-- Q6TGR8_SOLTU); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00026613g0014.1 protein AED:0.34 eAED:0.38 QI:40|0.61|0.52|0.84|0.55|0.63|19|0|1437; (*GB) gi|359490294|ref|XP_002263477.2| (e_value=2e-25) PREDICTED: uncharacterized protein LOC100263513 [Vitis vinifera];; (*ITAG) Solyc08g080690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61062698-61078787 transcript_region:SL2.40ch08:61062698..61078787- go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9I4C0_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00000278g0004.1 protein AED:0.22 eAED:0.22 QI:182|0.96|0.89|1|0.85|0.75|28|632|1223; (*GB) gi|297745637|emb|CBI40802.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P31828|PQQL_ECOLI (e_value=2e-27) Probable zinc protease pqqL OS=Escherichia coli (strain K12) GN=pqqL PE=3 SV=2;; (*TAIR) AT5G42390.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr5:16945308-16952647 FORWARD LENGTH=1265;; (*ITAG) Solyc03g118430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61358472-61373773 transcript_region:SL2.40ch03:61358472..61373773- go_terms:GO:0006508,GO:0046872 functional_description:"Peptidase M16 family (AHRD V1 *--- D3IC43_9BACT); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00007714g0005.1 protein AED:0.03 eAED:0.03 QI:52|0.5|0.6|1|0.25|0.6|5|13|372; (*GB) gi|255580766|ref|XP_002531204.1| (e_value=0.0) Benzoate carboxyl methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9FLN8|IAMT1_ARATH (e_value=0.0) Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1;; (*TAIR) AT5G55250.1 (e_value=0.0) | Symbols: IAMT1 | IAA carboxylmethyltransferase 1 | chr5:22407589-22410854 REVERSE LENGTH=386;; (*ITAG) Solyc12g014500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5468306-5475778 transcript_region:SL2.40ch12:5468306..5475778- go_terms:GO:0051749,GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein (AHRD V1 **** Q9FLN8_ARATH); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0051749,GO:0008757 NbS00019092g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|79; (*GB) gi|57014003|ref|YP_173474.1| (e_value=1e-37) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=2e-25) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=8e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00019092g0006.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|253; (*GB) gi|57013951|ref|YP_173423.1| (e_value=2e-37) hypothetical protein NitaMp081 [Nicotiana tabacum]; NbS00019092g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|3|0|164; (*GB) gi|242087489|ref|XP_002439577.1| (e_value=2e-43) hypothetical protein SORBIDRAFT_09g014016 [Sorghum bicolor];; (*SWP) sp|P93401|NU2M_OENBE (e_value=4e-26) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=7e-26) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00005651g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|61 NbS00005651g0008.1 protein AED:0.24 eAED:0.24 QI:27|0.62|0.33|1|0.5|0.44|9|0|470; (*GB) gi|175363751|gb|ACB72462.1| (e_value=0.0) elongation factor 1 gamma-like protein [Nicotiana tabacum];; (*SWP) sp|Q6YW46|EF1G2_ORYSJ (e_value=0.0) Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2;; (*TAIR) AT1G09640.1 (e_value=0.0) | Symbols: | Translation elongation factor EF1B, gamma chain | chr1:3120162-3122152 FORWARD LENGTH=414;; (*ITAG) Solyc11g028100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:16767881-16769971 transcript_region:SL2.40ch11:16767881..16769971+ go_terms:GO:0005853 functional_description:"Elongation factor 1-gamma (AHRD V1 ***- B7SDI2_ORYSJ); contains Interpro domain(s) IPR001662 Translation elongation factor EF1B, gamma chain, conserved "; GO:0005853 NbS00005651g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|131 NbS00036154g0005.1 protein AED:0.17 eAED:0.23 QI:0|0|0|0.83|0|0.33|6|0|394; (*GB) gi|54261825|gb|AAV31175.1| (e_value=1e-25) Putative disease resistance protein, identical [Solanum tuberosum];; (*ITAG) Solyc07g009180.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00036154g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.4|0.16|1|0.6|0.5|6|0|657; (*GB) gi|297738786|emb|CBI28031.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67290.1 (e_value=6e-151) | Symbols: | glyoxal oxidase-related protein | chr1:25191168-25193160 REVERSE LENGTH=615;; (*ITAG) Solyc07g021020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:15379657-15383754 transcript_region:SL2.40ch07:15379657..15383754- functional_description:"Glyoxal oxidase-like (AHRD V1 ***- Q8S198_ORYSJ); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00037705g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|356570974|ref|XP_003553657.1| (e_value=3e-32) PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max];; (*SWP) sp|O22256|PME20_ARATH (e_value=4e-29) Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2;; (*TAIR) AT2G47550.1 (e_value=3e-30) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19509024-19511604 FORWARD LENGTH=560;; (*ITAG) Solyc06g009190.2.1 (e_value=2e-28) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00034337g0003.1 protein AED:0.25 eAED:0.25 QI:329|0.83|0.69|1|0.5|0.61|13|0|663; (*GB) gi|225457955|ref|XP_002274931.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241980 [Vitis vinifera];; (*TAIR) AT1G30755.1 (e_value=8e-145) | Symbols: | Protein of unknown function (DUF668) | chr1:10905991-10908773 REVERSE LENGTH=615;; (*ITAG) Solyc04g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63055757-63062387 transcript_region:SL2.40ch04:63055757..63062387+ go_terms:GO:0016020 functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; GO:0016020 NbS00032482g0010.1 protein AED:0.23 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.66|3|0|264; (*GB) gi|221220532|gb|ACM08927.1| (e_value=7e-145) Tubulin beta-2C chain [Salmo salar];; (*SWP) sp|P29514|TBB6_ARATH (e_value=3e-126) Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1;; (*TAIR) AT5G12250.1 (e_value=2e-127) | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449;; (*ITAG) Solyc03g118760.2.1 (e_value=3e-134) genomic_reference:SL2.40ch03 gene_region:61639783-61641544 transcript_region:SL2.40ch03:61639783..61641544- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HNJ2_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00032482g0011.1 protein AED:0.15 eAED:0.15 QI:21|1|0.75|1|0.71|0.87|8|0|370; (*GB) gi|350537433|ref|NP_001234549.1| (e_value=0.0) phosphoethanolamine N-methyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9M571|PEAMT_SPIOL (e_value=0.0) Phosphoethanolamine N-methyltransferase OS=Spinacia oleracea GN=PEAMT PE=1 SV=1;; (*TAIR) AT1G73600.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:27670825-27673400 FORWARD LENGTH=490;; (*ITAG) Solyc03g118750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61633672-61639223 transcript_region:SL2.40ch03:61633672..61639223+ go_terms:GO:0000234 functional_description:"Phosphoethanolamine N-methyltransferase (AHRD V1 **** Q9AXH3_SOLLC); contains Interpro domain(s) IPR000896 Hemocyanin, copper-containing "; GO:0000234 NbC25850686g0003.1 protein AED:0.12 eAED:0.12 QI:210|0.66|0.5|1|0.66|0.75|4|0|149; (*GB) gi|224133668|ref|XP_002327651.1| (e_value=4e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94KB1|MLO14_ARATH (e_value=3e-16) MLO-like protein 14 OS=Arabidopsis thaliana GN=MLO14 PE=2 SV=1;; (*TAIR) AT1G26700.1 (e_value=2e-17) | Symbols: MLO14, ATMLO14 | Seven transmembrane MLO family protein | chr1:9228300-9232237 FORWARD LENGTH=554;; (*ITAG) Solyc02g083720.2.1 (e_value=8e-59) genomic_reference:SL2.40ch02 gene_region:41596474-41602413 transcript_region:SL2.40ch02:41596474..41602413- go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00022465g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|255587017|ref|XP_002534100.1| (e_value=8e-34) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g010320.1.1 (e_value=5e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3400639-3401196 transcript_region:SL2.40ch11:3400639..3401196- functional_description:"AT2G46550 protein (Fragment) (AHRD V1 ***- B9DHY8_ARATH)"; NbS00022465g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|0.5|1|3|0|1108; (*GB) gi|224083569|ref|XP_002307067.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=0.0) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT4G01020.1 (e_value=0.0) | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr4:439086-445043 FORWARD LENGTH=1787;; (*ITAG) Solyc11g010310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3393422-3400263 transcript_region:SL2.40ch11:3393422..3400263+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 NbS00022465g0003.1 protein AED:0.42 eAED:0.44 QI:0|0|0|1|1|1|3|0|385; (*GB) gi|357463271|ref|XP_003601917.1| (e_value=6e-133) Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=7e-73) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT5G10370.1 (e_value=1e-74) | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775;; (*ITAG) Solyc04g014210.2.1 (e_value=6e-163) genomic_reference:SL2.40ch04 gene_region:4509385-4517601 transcript_region:SL2.40ch04:4509385..4517601+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 NbS00022465g0004.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|140; (*ITAG) Solyc04g014210.2.1 (e_value=9e-21) genomic_reference:SL2.40ch04 gene_region:4509385-4517601 transcript_region:SL2.40ch04:4509385..4517601+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 NbS00001318g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.14|1|0.66|0.85|7|0|460; (*GB) gi|61223199|gb|AAX40666.1| (e_value=0.0) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=5e-142) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=2e-92) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc12g006570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00001318g0009.1 protein AED:0.16 eAED:0.21 QI:0|0|0|0.75|0|0.25|4|0|174; (*GB) gi|61223199|gb|AAX40666.1| (e_value=8e-40) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H2|TPSVS_VITVI (e_value=6e-25) Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1;; (*TAIR) AT5G23960.1 (e_value=5e-17) | Symbols: ATTPS21, TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=547;; (*ITAG) Solyc12g006570.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00001318g0008.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|343409100|gb|AEM23830.1| (e_value=2e-15) sesquiterpene synthase [Solanum habrochaites];; (*ITAG) Solyc07g052140.2.1 (e_value=2e-21) genomic_reference:SL2.40ch07 gene_region:57994754-57995894 transcript_region:SL2.40ch07:57994754..57995894- go_terms:GO:0016829 functional_description:"(-)-germacrene D synthase (AHRD V1 ***- Q64K29_9ROSI); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbS00004141g0009.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|356; (*GB) gi|225438797|ref|XP_002283187.1| (e_value=1e-150) PREDICTED: uncharacterized protein LOC100259508 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=1e-137) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc02g093090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48596619-48597545 transcript_region:SL2.40ch02:48596619..48597545- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00004141g0021.1 protein AED:0.56 eAED:0.62 QI:89|0.33|0.5|1|0.66|0.75|4|0|102; (*GB) gi|37719049|emb|CAE45567.1| (e_value=5e-49) SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=3e-45) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=2e-46) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc03g044260.2.1 (e_value=7e-51) genomic_reference:SL2.40ch03 gene_region:12566720-12571878 transcript_region:SL2.40ch03:12566720..12571878+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00004141g0025.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0.33|3|0|648; (*GB) gi|225438793|ref|XP_002283167.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g67200 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93Y06|Y5720_ARATH (e_value=0.0) Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1;; (*TAIR) AT5G67200.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:26813893-26816555 REVERSE LENGTH=669;; (*ITAG) Solyc02g093100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48601105-48604496 transcript_region:SL2.40ch02:48601105..48604496+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00004141g0018.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|197|136; (*GB) gi|358008882|gb|AET99100.1| (e_value=5e-77) dehydration-responsive element-binding protein DREB3 [Solanum tuberosum];; (*SWP) sp|O22174|ERF08_ARATH (e_value=3e-44) Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1;; (*TAIR) AT2G23340.1 (e_value=3e-45) | Symbols: DEAR3 | DREB and EAR motif protein 3 | chr2:9938186-9938716 FORWARD LENGTH=176;; (*ITAG) Solyc02g093130.1.1 (e_value=1e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48631396-48631797 transcript_region:SL2.40ch02:48631396..48631797+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00004141g0024.1 protein AED:0.27 eAED:0.29 QI:84|0.66|0.6|0.8|0.33|0.5|10|0|336; (*GB) gi|296082378|emb|CBI21383.3| (e_value=3e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VC52|RBPS2_MOUSE (e_value=1e-13) RNA-binding protein with multiple splicing 2 OS=Mus musculus GN=Rbpms2 PE=1 SV=1;; (*TAIR) AT2G42240.3 (e_value=1e-79) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:17596844-17598972 FORWARD LENGTH=289;; (*ITAG) Solyc02g093120.2.1 (e_value=2e-79) genomic_reference:SL2.40ch02 gene_region:48623523-48626914 transcript_region:SL2.40ch02:48623523..48626914+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- B2VRY0_PYRTR); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00004141g0007.1 protein AED:0.30 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|358008882|gb|AET99100.1| (e_value=2e-52) dehydration-responsive element-binding protein DREB3 [Solanum tuberosum];; (*SWP) sp|Q9FH94|ERF10_ARATH (e_value=2e-43) Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1;; (*TAIR) AT5G67190.1 (e_value=2e-44) | Symbols: DEAR2 | DREB and EAR motif protein 2 | chr5:26809135-26809689 REVERSE LENGTH=184;; (*ITAG) Solyc04g078640.1.1 (e_value=4e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60925634-60926080 transcript_region:SL2.40ch04:60925634..60926080+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00059532g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|433; (*GB) gi|267821869|gb|ACY79504.1| (e_value=0.0) arogenate dehydratase 3 [Petunia x hybrida];; (*SWP) sp|Q9SGD6|AROD6_ARATH (e_value=0.0) Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1;; (*TAIR) AT1G08250.1 (e_value=0.0) | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588994-2590235 REVERSE LENGTH=413;; (*ITAG) Solyc11g066890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49772513-49773796 transcript_region:SL2.40ch11:49772513..49773796- go_terms:GO:0009094 functional_description:"Prephenate dehydratase (AHRD V1 ***- Q6JJ29_IPOTF); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0009094 NbS00051880g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|156070795|gb|ABU45207.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*SWP) sp|Q9M065|PP352_ARATH (e_value=8e-162) Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1;; (*TAIR) AT4G36680.1 (e_value=6e-163) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17292479-17293717 REVERSE LENGTH=412;; (*ITAG) Solyc02g085650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43061571-43067422 transcript_region:SL2.40ch02:43061571..43067422+ go_terms:GO:0006508,GO:0009987 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MBF2_ARALY); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0006508,GO:0009987 NbS00051880g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|124; (*ITAG) Solyc02g090610.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:46739684-46739986 transcript_region:SL2.40ch02:46739684..46739986+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051880g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|101; (*ITAG) Solyc02g090600.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:46728742-46729266 transcript_region:SL2.40ch02:46728742..46729266- functional_description:"Unknown Protein (AHRD V1)"; NbS00028128g0007.1 protein AED:0.06 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|772; (*GB) gi|225439974|ref|XP_002276043.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase-like protein CCR1-like [Vitis vinifera];; (*SWP) sp|Q9S7D9|ACCR1_ARATH (e_value=0.0) Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1;; (*TAIR) AT3G09780.1 (e_value=0.0) | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000838-3003165 REVERSE LENGTH=775;; (*ITAG) Solyc09g007750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1282766-1285331 transcript_region:SL2.40ch09:1282766..1285331- go_terms:GO:0042803 functional_description:"Receptor-like kinase (AHRD V1 *-*- C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00028128g0006.1 protein AED:0.27 eAED:0.27 QI:122|0.33|0.75|1|0.66|0.75|4|313|246; (*GB) gi|302425179|sp|P85193.1|PK01_HELAN (e_value=4e-37) RecName: Full=Putative serine/threonine-protein kinase;; (*SWP) sp|P85193|PK01_HELAN (e_value=1e-38) Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT1G16670.1 (e_value=8e-21) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc09g007730.2.1 (e_value=2e-65) genomic_reference:SL2.40ch09 gene_region:1272790-1275138 transcript_region:SL2.40ch09:1272790..1275138+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U5V2_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00015274g0005.1 protein AED:0.07 eAED:0.07 QI:57|1|1|1|0.8|0.83|6|204|367; (*GB) gi|1072390|emb|CAA63753.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q9FMH5|CCA31_ARATH (e_value=2e-147) Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1;; (*TAIR) AT5G43080.1 (e_value=1e-148) | Symbols: CYCA3;1 | Cyclin A3;1 | chr5:17293227-17294789 FORWARD LENGTH=355;; (*ITAG) Solyc12g088530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62294192-62296328 transcript_region:SL2.40ch12:62294192..62296328+ go_terms:GO:0005634 functional_description:"Cyclin A-like protein (AHRD V1 ***- Q40492_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00049954g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|285; (*GB) gi|218197829|gb|EEC80256.1| (e_value=2e-29) hypothetical protein OsI_22218 [Oryza sativa Indica Group];; (*TAIR) AT5G07900.1 (e_value=4e-19) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc04g072510.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:57108631-57111970 transcript_region:SL2.40ch04:57108631..57111970+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q67UH5_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00026811g0008.1 protein AED:0.04 eAED:0.04 QI:237|1|0.8|1|1|1|5|575|606; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-52) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00026811g0006.1 protein AED:0.41 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|357502141|ref|XP_003621359.1| (e_value=9e-29) Ripening-related protein [Medicago truncatula];; (*SWP) sp|Q7XVA8|RIP1_ORYSJ (e_value=4e-24) Putative ripening-related protein 1 OS=Oryza sativa subsp. japonica GN=Os04g0364800 PE=3 SV=2;; (*ITAG) Solyc01g094440.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:77683954-77684523 transcript_region:SL2.40ch01:77683954..77684523+ functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00026811g0005.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.25|1|1|4|0|160; (*ITAG) Solyc10g049530.1.1 (e_value=6e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00043361g0010.1 protein AED:0.06 eAED:0.06 QI:182|1|0.5|1|1|1|2|0|598; (*GB) gi|225435528|ref|XP_002283014.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265521 [Vitis vinifera];; (*TAIR) AT5G12900.1 (e_value=8e-155) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562;; (*ITAG) Solyc01g006690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1267165-1270752 transcript_region:SL2.40ch01:1267165..1270752- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00043361g0011.1 protein AED:0.24 eAED:0.78 QI:0|0|0|1|0|0|2|0|487; (*GB) gi|359493483|ref|XP_003634610.1| (e_value=1e-20) PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=3e-11) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT1G69550.1 (e_value=2e-16) | Symbols: | disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400;; (*ITAG) Solyc01g014840.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:15577916-15583605 transcript_region:SL2.40ch01:15577916..15583605- go_terms:GO:0030275,GO:0000166 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030275,GO:0000166 NbS00000925g0004.1 protein AED:0.02 eAED:0.02 QI:204|1|1|1|0|0|3|54|179; (*GB) gi|225431869|ref|XP_002275498.1| (e_value=2e-34) PREDICTED: GATA transcription factor 16 [Vitis vinifera];; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=6e-29) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=4e-30) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc05g054400.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:63466881-63469046 transcript_region:SL2.40ch05:63466881..63469046- go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00000925g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.83|1|1|1|6|0|679; (*GB) gi|343407542|gb|AEM23772.1| (e_value=0.0) RRB2 type-b response regulator [Nicotiana tabacum];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=1e-158) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G16857.2 (e_value=9e-160) | Symbols: ARR1, RR1 | response regulator 1 | chr3:5756113-5759139 FORWARD LENGTH=690;; (*ITAG) Solyc05g054390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63460779-63466205 transcript_region:SL2.40ch05:63460779..63466205+ go_terms:GO:0005515,GO:0003700 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0005515,GO:0003700 NbS00000925g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|179; (*GB) gi|297743947|emb|CBI36917.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G13030.2 (e_value=3e-21) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7607400-7609656 FORWARD LENGTH=479;; (*ITAG) Solyc00g091170.2.1 (e_value=3e-105) genomic_reference:SL2.40ch00 gene_region:15411866-15414825 transcript_region:SL2.40ch00:15411866..15414825+ functional_description:"ATP binding protein (AHRD V1 ***- B6TPV9_MAIZE)"; NbS00000925g0107.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|546 NbS00000925g0108.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|160 NbS00004229g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0|2|1715|354; (*GB) gi|225428953|ref|XP_002263494.1| (e_value=1e-135) PREDICTED: uncharacterized protein LOC100256708 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=1e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc01g107210.2.1 (e_value=7e-83) genomic_reference:SL2.40ch01 gene_region:86612729-86614740 transcript_region:SL2.40ch01:86612729..86614740+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00004229g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|325; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=3e-20) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc01g005850.1.1 (e_value=6e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:575510-576400 transcript_region:SL2.40ch01:575510..576400+ functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbS00004229g0004.1 protein AED:0.06 eAED:0.13 QI:217|0.75|0.4|1|1|1|5|0|718; (*GB) gi|296083075|emb|CBI22479.3| (e_value=3e-106) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G49870.2 (e_value=3e-58) | Symbols: | unknown protein; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:18460911-18463557 FORWARD LENGTH=790;; (*ITAG) Solyc01g107260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86627692-86632397 transcript_region:SL2.40ch01:86627692..86632397- functional_description:"Transport protein-related (AHRD V1 *-*- Q1EPF1_MUSAC)"; NbS00004229g0022.1 protein AED:0.13 eAED:0.13 QI:70|1|0.66|1|0.8|0.83|6|0|191; (*GB) gi|224056230|ref|XP_002298766.1| (e_value=7e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AG2|SERK1_ARATH (e_value=4e-68) Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2;; (*TAIR) AT3G43740.1 (e_value=6e-86) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:15644127-15645446 FORWARD LENGTH=218;; (*ITAG) Solyc01g107250.2.1 (e_value=5e-117) genomic_reference:SL2.40ch01 gene_region:86624587-86627235 transcript_region:SL2.40ch01:86624587..86627235- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004229g0005.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|255573111|ref|XP_002527485.1| (e_value=3e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19550.1 (e_value=4e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6787462-6788165 REVERSE LENGTH=110;; (*ITAG) Solyc01g107280.2.1 (e_value=3e-31) genomic_reference:SL2.40ch01 gene_region:86639086-86640167 transcript_region:SL2.40ch01:86639086..86640167- functional_description:"Unknown Protein (AHRD V1)"; NbS00004229g0017.1 protein AED:0.19 eAED:0.19 QI:206|0.5|0.66|1|0.5|0.33|3|0|238; (*GB) gi|297798524|ref|XP_002867146.1| (e_value=9e-73) hypothetical protein ARALYDRAFT_491288 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=1e-21) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT4G33905.1 (e_value=1e-74) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:16254065-16255592 REVERSE LENGTH=261;; (*ITAG) Solyc01g107240.2.1 (e_value=6e-113) genomic_reference:SL2.40ch01 gene_region:86619848-86622348 transcript_region:SL2.40ch01:86619848..86622348- go_terms:GO:0016021 functional_description:"Peroxisomal membrane MPV17/PMP22-like protein (AHRD V1 *--- A8J1X1_CHLRE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00004229g0014.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|82 NbS00004229g0109.1 protein AED:0.35 eAED:0.35 QI:201|0.66|0.5|0.75|0.66|0.5|4|0|279 NbS00004229g0110.1 protein AED:0.18 eAED:0.28 QI:37|0|0|1|0|0|2|0|120 NbS00001834g0011.1 protein AED:0.26 eAED:0.26 QI:272|1|1|1|0.84|0.85|14|539|494; (*GB) gi|2921211|gb|AAC04692.1| (e_value=0.0) beta-ketoacyl-ACP synthase II [Perilla frutescens];; (*SWP) sp|Q9C9P4|KASC2_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1;; (*TAIR) AT1G74960.3 (e_value=0.0) | Symbols: FAB1 | fatty acid biosynthesis 1 | chr1:28152564-28155948 REVERSE LENGTH=541;; (*ITAG) Solyc03g122120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64122687-64128467 transcript_region:SL2.40ch03:64122687..64128467- go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase 2 (AHRD V1 **** D0ZZB8_CHLPP); contains Interpro domain(s) IPR000794 Beta-ketoacyl synthase "; GO:0005515,GO:0004315 NbS00001834g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.94|0.73|0.94|0.83|1|19|0|1334; (*GB) gi|359486189|ref|XP_002267256.2| (e_value=0.0) PREDICTED: RRP12-like protein-like [Vitis vinifera];; (*SWP) sp|Q5ZKD5|RRP12_CHICK (e_value=1e-83) RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1;; (*TAIR) AT2G34357.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280;; (*ITAG) Solyc07g042380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52832624-52846801 transcript_region:SL2.40ch07:52832624..52846801- go_terms:GO:0005488 functional_description:"Ribosomal RNA processing protein (AHRD V1 *--- A6ZWN4_YEAS7); contains Interpro domain(s) IPR012978 Region of unknown function, NUC173 "; GO:0005488 NbS00006118g0004.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|224112807|ref|XP_002316298.1| (e_value=5e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT1G65520.1 (e_value=2e-87) | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), delta(2)-enoyl CoA isomerase 1 | chr1:24361171-24361893 REVERSE LENGTH=240;; (*ITAG) Solyc01g091520.2.1 (e_value=5e-135) genomic_reference:SL2.40ch01 gene_region:76904829-76905887 transcript_region:SL2.40ch01:76904829..76905887+ go_terms:GO:0004165 functional_description:"Enoyl-CoA hydratase/isomerase family protein (AHRD V1 **** D7KSC7_ARALY); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0004165 NbS00006118g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|0.83|1|0.4|0.33|6|716|821; (*GB) gi|297742644|emb|CBI34793.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73970.1 (e_value=0.0) | Symbols: | unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:27817140-27819963 FORWARD LENGTH=803;; (*ITAG) Solyc08g079810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60430800-60436352 transcript_region:SL2.40ch08:60430800..60436352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006118g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|225426684|ref|XP_002281623.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LDH3|PT112_ARATH (e_value=1e-164) Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana GN=At1g12500 PE=2 SV=1;; (*TAIR) AT1G12500.1 (e_value=9e-166) | Symbols: | Nucleotide-sugar transporter family protein | chr1:4263542-4264957 REVERSE LENGTH=361;; (*ITAG) Solyc08g079790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60425501-60426571 transcript_region:SL2.40ch08:60425501..60426571- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6TX95_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00035294g0005.1 protein AED:0.05 eAED:0.05 QI:83|0.5|0.33|1|0.5|0.33|3|0|1037; (*GB) gi|225461500|ref|XP_002282588.1| (e_value=0.0) PREDICTED: phytosulfokine receptor 2-like [Vitis vinifera];; (*SWP) sp|Q9FN37|PSKR2_ARATH (e_value=0.0) Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1;; (*TAIR) AT5G53890.1 (e_value=0.0) | Symbols: PSKR2, AtPSKR2 | phytosylfokine-alpha receptor 2 | chr5:21877235-21880345 FORWARD LENGTH=1036;; (*ITAG) Solyc07g063000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62832265-62835900 transcript_region:SL2.40ch07:62832265..62835900- go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00025638g0008.1 protein AED:0.16 eAED:0.16 QI:54|1|0.77|1|0.87|1|9|318|755; (*GB) gi|225456501|ref|XP_002280957.1| (e_value=0.0) PREDICTED: glycyl-tRNA synthetase 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O23627|SYGM1_ARATH (e_value=0.0) Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1;; (*TAIR) AT1G29880.1 (e_value=0.0) | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729;; (*ITAG) Solyc11g039830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:26495832-26502157 transcript_region:SL2.40ch11:26495832..26502157+ go_terms:GO:0006412,GO:0005737,GO:0006418 functional_description:"Glycyl-tRNA synthetase (AHRD V1 ***- D7KEM8_ARALY); contains Interpro domain(s) IPR002315 Glycyl-tRNA synthetase, alpha2 dimer "; GO:0006412,GO:0005737,GO:0006418 NbS00025638g0003.1 protein AED:0.41 eAED:0.45 QI:0|0|0.5|1|1|1|2|186|75 NbS00037810g0005.1 protein AED:0.18 eAED:0.18 QI:23|1|0.83|1|1|1|6|0|333; (*GB) gi|255540061|ref|XP_002511095.1| (e_value=9e-178) Signal recognition particle 68 kDa protein, putative [Ricinus communis];; (*SWP) sp|Q00004|SRP68_CANFA (e_value=6e-25) Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1;; (*TAIR) AT5G61970.1 (e_value=3e-151) | Symbols: | signal recognition particle-related / SRP-related | chr5:24888920-24893079 FORWARD LENGTH=605;; (*ITAG) Solyc02g062810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29169765-29181848 transcript_region:SL2.40ch02:29169765..29181848+ go_terms:GO:0005047 functional_description:"Signal recognition particle 68 (AHRD V1 **** A2AAN1_MOUSE)"; GO:0005047 NbS00037810g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|228; (*GB) gi|147791150|emb|CAN70268.1| (e_value=2e-12) hypothetical protein VITISV_016147 [Vitis vinifera];; (*ITAG) Solyc03g093980.1.1 (e_value=2e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49140216-49141516 transcript_region:SL2.40ch03:49140216..49141516- functional_description:"Unknown Protein (AHRD V1)"; NbS00046686g0005.1 protein AED:0.12 eAED:0.12 QI:62|1|1|1|0.42|0.5|8|453|510; (*GB) gi|225440348|ref|XP_002270322.1| (e_value=0.0) PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [Vitis vinifera];; (*SWP) sp|Q5BKT4|AG10A_HUMAN (e_value=2e-61) Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase OS=Homo sapiens GN=ALG10 PE=1 SV=1;; (*TAIR) AT5G02410.1 (e_value=0.0) | Symbols: | DIE2/ALG10 family | chr5:517319-519634 REVERSE LENGTH=509;; (*ITAG) Solyc09g010770.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4057294-4064073 transcript_region:SL2.40ch09:4057294..4064073+ go_terms:GO:0015459,GO:0004583 functional_description:"Alpha-1 2-glucosyltransferase ALG10-B (AHRD V1 **** D3PGD7_9MAXI); contains Interpro domain(s) IPR016900 Alpha-1, 2 glucosyltransferase Alg10 "; GO:0015459,GO:0004583 NbS00046686g0006.1 protein AED:0.13 eAED:0.14 QI:0|0.66|0|1|1|1|4|0|568; (*GB) gi|225434963|ref|XP_002283914.1| (e_value=8e-167) PREDICTED: probable protein phosphatase 2C 23-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LQN6|P2C04_ARATH (e_value=5e-145) Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1;; (*TAIR) AT1G07630.1 (e_value=4e-146) | Symbols: PLL5 | pol-like 5 | chr1:2349189-2351437 FORWARD LENGTH=662;; (*ITAG) Solyc09g010780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4070839-4073437 transcript_region:SL2.40ch09:4070839..4073437- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00027336g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|95; (*ITAG) Solyc01g056230.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00027336g0011.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|145; (*GB) gi|372995481|gb|AEY11296.1| (e_value=3e-91) pathogenesis-related protein PR10 [Nicotiana tabacum];; (*SWP) sp|P17642|PRS2_SOLTU (e_value=2e-77) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*ITAG) Solyc09g090970.2.1 (e_value=2e-82) genomic_reference:SL2.40ch09 gene_region:65693954-65695375 transcript_region:SL2.40ch09:65693954..65695375- go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q84LA7_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00003834g0008.1 protein AED:0.20 eAED:0.21 QI:333|1|0.85|1|0.66|0.85|7|0|273; (*GB) gi|225439305|ref|XP_002267832.1| (e_value=4e-131) PREDICTED: 50S ribosomal protein L22, chloroplastic [Vitis vinifera];; (*SWP) sp|A6U864|RL22_SINMW (e_value=5e-25) 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1;; (*TAIR) AT4G28360.1 (e_value=7e-106) | Symbols: | Ribosomal protein L22p/L17e family protein | chr4:14029294-14030926 REVERSE LENGTH=271;; (*ITAG) Solyc04g017680.2.1 (e_value=3e-167) genomic_reference:SL2.40ch04 gene_region:7754737-7758043 transcript_region:SL2.40ch04:7754737..7758043+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L22-like (AHRD V1 ***- Q5ZDK4_ORYSJ); contains Interpro domain(s) IPR005727 Ribosomal protein L22, bacterial-type "; GO:0005840,GO:0015934 NbS00003834g0003.1 protein AED:0.32 eAED:0.41 QI:0|0|0|1|1|1|2|0|107 NbS00013345g0011.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|286; (*GB) gi|359807086|ref|NP_001241600.1| (e_value=1e-29) uncharacterized protein LOC100804857 [Glycine max];; (*ITAG) Solyc09g010410.2.1 (e_value=8e-140) genomic_reference:SL2.40ch09 gene_region:3784428-3786624 transcript_region:SL2.40ch09:3784428..3786624+ functional_description:"BRI1-KD interacting protein 130 (AHRD V1 ***- Q761Y4_ORYSJ)"; NbS00013345g0008.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|124; (*ITAG) Solyc09g010430.1.1 (e_value=7e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3799400-3799663 transcript_region:SL2.40ch09:3799400..3799663- functional_description:"Unknown Protein (AHRD V1)"; NbS00013345g0006.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|64 NbS00013345g0014.1 protein AED:0.14 eAED:0.14 QI:239|0.86|0.93|1|0.93|0.93|16|310|413; (*GB) gi|359481336|ref|XP_002274213.2| (e_value=0.0) PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZUR7|ARGJ_ARATH (e_value=0.0) Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Arabidopsis thaliana GN=At2g37500 PE=1 SV=2;; (*TAIR) AT2G37500.1 (e_value=0.0) | Symbols: | arginine biosynthesis protein ArgJ family | chr2:15739904-15742689 REVERSE LENGTH=468;; (*ITAG) Solyc09g010420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3786597-3795092 transcript_region:SL2.40ch09:3786597..3795092- go_terms:GO:0004042,GO:0004358 functional_description:"Arginine biosynthesis bifunctional protein ArgJ (AHRD V1 ***- B4VHU0_9CYAN); contains Interpro domain(s) IPR002813 Arginine biosynthesis protein ArgJ "; GO:0004042,GO:0004358 NbS00037727g0002.1 protein AED:0.01 eAED:0.01 QI:280|1|0.5|1|0|0|2|0|456; (*GB) gi|357519091|ref|XP_003629834.1| (e_value=2e-166) hypothetical protein MTR_8g087400 [Medicago truncatula];; (*TAIR) AT1G29300.1 (e_value=5e-145) | Symbols: UNE1 | Plant protein of unknown function (DUF641) | chr1:10248120-10249499 REVERSE LENGTH=459;; (*ITAG) Solyc02g072140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36004961-36006331 transcript_region:SL2.40ch02:36004961..36006331+ functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAQ7_GOSRA); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00037727g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|0.83|0.71|7|176|475; (*GB) gi|15226261|ref|NP_180972.1| (e_value=0.0) protein transport protein SEC61 subunit alpha [Arabidopsis thaliana];; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=0.0) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1;; (*TAIR) AT2G34250.2 (e_value=0.0) | Symbols: | SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475;; (*ITAG) Solyc02g072130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35987256-35990574 transcript_region:SL2.40ch02:35987256..35990574+ go_terms:GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0015450 NbS00037727g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|691|695; (*GB) gi|225443732|ref|XP_002268174.1| (e_value=0.0) PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Vitis vinifera];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=0.0) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc02g072150.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36009721-36013800 transcript_region:SL2.40ch02:36009721..36013800- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00037727g0004.1 protein AED:0.47 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|255562498|ref|XP_002522255.1| (e_value=1e-37) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|O23617|TPS5_ARATH (e_value=4e-27) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 OS=Arabidopsis thaliana GN=TPS5 PE=1 SV=2;; (*TAIR) AT4G17770.1 (e_value=3e-28) | Symbols: ATTPS5, TPS5 | trehalose phosphatase/synthase 5 | chr4:9877055-9880084 FORWARD LENGTH=862;; (*ITAG) Solyc02g072150.2.1 (e_value=5e-44) genomic_reference:SL2.40ch02 gene_region:36009721-36013800 transcript_region:SL2.40ch02:36009721..36013800- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00049899g0003.1 protein AED:0.04 eAED:0.04 QI:494|1|1|1|1|1|4|336|456; (*GB) gi|224107951|ref|XP_002314666.1| (e_value=9e-166) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14750.1 (e_value=9e-78) | Symbols: IQD19 | IQ-domain 19 | chr4:8470449-8471903 FORWARD LENGTH=387;; (*ITAG) Solyc09g082560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63677616-63679791 transcript_region:SL2.40ch09:63677616..63679791- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6SW62_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00006360g0006.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0|2|0|260; (*GB) gi|57013886|ref|YP_173360.1| (e_value=3e-152) cytochrome c maturation protein CcmC [Nicotiana tabacum];; (*SWP) sp|P92527|CCMC_ARATH (e_value=5e-106) Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMC PE=2 SV=4;; (*ITAG) ATMG00900.1 (e_value=3e-135) | Symbols: CCB256 | cytochrome C biogenesis 256 | chrM:239988-240758 REVERSE LENGTH=256;; (*ITAG) Solyc12g035840.1.1 (e_value=8e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29006530-29008560 transcript_region:SL2.40ch12:29006530..29008560+ go_terms:GO:0005840,GO:0016020 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 *-*- D3WBC0_9BORA); contains Interpro domain(s) IPR003557 Cytochrome c-type biogenesis protein CcmC "; GO:0005840,GO:0016020 NbS00006360g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|60 NbS00019592g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.25|0.75|1|1|4|0|114; (*GB) gi|255562512|ref|XP_002522262.1| (e_value=2e-66) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q4V8W7|UBTD1_DANRE (e_value=2e-31) Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1;; (*TAIR) AT1G53400.1 (e_value=2e-68) | Symbols: | Ubiquitin domain-containing protein | chr1:19925009-19926400 FORWARD LENGTH=114;; (*ITAG) Solyc02g072100.2.1 (e_value=5e-71) genomic_reference:SL2.40ch02 gene_region:35961800-35967753 transcript_region:SL2.40ch02:35961800..35967753- go_terms:GO:0005515 functional_description:"Ubiquitin domain containing 1 (AHRD V1 ***- B6T693_MAIZE)"; GO:0005515 NbS00037566g0014.1 protein AED:0.15 eAED:0.15 QI:226|0.84|0.9|0.95|0.84|0.95|20|395|911; (*GB) gi|350537729|ref|NP_001234307.1| (e_value=0.0) beta-galactosidase, chloroplastic precursor [Solanum lycopersicum];; (*SWP) sp|Q5N8X6|BGAL3_ORYSJ (e_value=0.0) Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1;; (*TAIR) AT5G63810.1 (e_value=0.0) | Symbols: BGAL10 | beta-galactosidase 10 | chr5:25537242-25541315 FORWARD LENGTH=741;; (*ITAG) Solyc03g019890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6781354-6790955 transcript_region:SL2.40ch03:6781354..6790955+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- A2JGX1_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00037566g0012.1 protein AED:0.28 eAED:0.28 QI:635|0.77|0.7|1|0.66|0.5|10|333|468; (*GB) gi|862342|dbj|BAA06731.1| (e_value=0.0) NPK2 [Nicotiana tabacum];; (*SWP) sp|Q9FJV0|M2K6_ARATH (e_value=2e-53) Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1;; (*TAIR) AT5G40440.1 (e_value=0.0) | Symbols: ATMKK3, MKK3 | mitogen-activated protein kinase kinase 3 | chr5:16182149-16184513 FORWARD LENGTH=520;; (*ITAG) Solyc03g019850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6757647-6762359 transcript_region:SL2.40ch03:6757647..6762359+ go_terms:GO:0005515,GO:0004708 functional_description:"MAP kinase (AHRD V1 *-** D8SYB3_SELML); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004708 NbS00037566g0018.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.66|1|0.5|0.66|3|36|116; (*GB) gi|255569027|ref|XP_002525483.1| (e_value=5e-32) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZ89|Y1815_ARATH (e_value=2e-28) UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=1 SV=1;; (*TAIR) AT1G28150.1 (e_value=1e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 96 Blast hits to 96 proteins in 44 species: Archae - 0; Bacteria - 56; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9835122-9835842 REVERSE LENGTH=123;; (*ITAG) Solyc03g019880.2.1 (e_value=1e-59) genomic_reference:SL2.40ch03 gene_region:6774310-6777201 transcript_region:SL2.40ch03:6774310..6777201+ functional_description:"UPF0426 protein At1g28150, chloroplastic (AHRD V1 ***- Y1815_ARATH)"; NbS00037566g0020.1 protein AED:0.07 eAED:0.07 QI:0|0.87|0.77|1|0.5|0.55|9|0|472; (*GB) gi|224116502|ref|XP_002331913.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK6|C72B1_PINTA (e_value=4e-115) Abietadienol/abietadienal oxidase OS=Pinus taeda GN=CYP720B1 PE=1 SV=1;; (*TAIR) AT1G73340.1 (e_value=0.0) | Symbols: | Cytochrome P450 superfamily protein | chr1:27573136-27575273 FORWARD LENGTH=514;; (*ITAG) Solyc03g019870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6765561-6769072 transcript_region:SL2.40ch03:6765561..6769072- go_terms:GO:0016709,GO:0010012 functional_description:"Cytochrome P450"; GO:0016709,GO:0010012 NbS00037566g0015.1 protein AED:0.72 eAED:0.86 QI:30|0|0|1|0|0|2|0|81 NbS00032707g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|75150330|sp|Q8GSM7.1|HCT_TOBAC (e_value=2e-40) RecName: Full=Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase; AltName: Full=Hydroxycinnamoyl transferase;; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=4e-42) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-35) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=2e-43) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00001999g0012.1 protein AED:0.17 eAED:0.17 QI:175|0.66|0.75|1|0.66|0.5|4|521|143; (*GB) gi|83283989|gb|ABC01902.1| (e_value=1e-48) putative 60S ribosomal protein L7-like protein [Solanum tuberosum];; (*SWP) sp|P60040|RL72_ARATH (e_value=2e-27) 60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1;; (*TAIR) AT2G01250.1 (e_value=1e-28) | Symbols: | Ribosomal protein L30/L7 family protein | chr2:132943-134264 REVERSE LENGTH=242;; (*ITAG) Solyc06g068400.2.1 (e_value=7e-51) genomic_reference:SL2.40ch06 gene_region:38764144-38767352 transcript_region:SL2.40ch06:38764144..38767352+ go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0042803 NbS00001999g0013.1 protein AED:0.20 eAED:0.21 QI:44|0.44|0.6|0.9|0.55|0.7|10|432|370; (*GB) gi|359476152|ref|XP_002282819.2| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera];; (*TAIR) AT1G15940.1 (e_value=3e-14) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr1:5473672-5478050 FORWARD LENGTH=990;; (*ITAG) Solyc06g068430.2.1 (e_value=2e-61) genomic_reference:SL2.40ch06 gene_region:38778774-38788422 transcript_region:SL2.40ch06:38778774..38788422+ go_terms:GO:0042802 functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 *--- PDS5A_MOUSE); contains Interpro domain(s) IPR002999 Tudor domain "; GO:0042802 NbS00001999g0004.1 protein AED:0.13 eAED:0.14 QI:157|0|0.5|1|0|0.5|2|0|279; (*GB) gi|225465508|ref|XP_002272165.1| (e_value=0.0) PREDICTED: probable CCR4-associated factor 1 homolog 7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SKZ2|CAF1G_ARATH (e_value=6e-162) Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2;; (*TAIR) AT2G32070.1 (e_value=4e-163) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275;; (*ITAG) Solyc03g117030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60347167-60347991 transcript_region:SL2.40ch03:60347167..60347991+ go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00001999g0011.1 protein AED:0.25 eAED:0.25 QI:137|1|0.66|1|1|1|3|256|227; (*GB) gi|255572769|ref|XP_002527317.1| (e_value=8e-71) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=5e-42) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G80690.1 (e_value=1e-64) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:30329283-30330524 REVERSE LENGTH=227;; (*ITAG) Solyc06g068380.2.1 (e_value=3e-93) genomic_reference:SL2.40ch06 gene_region:38752922-38754704 transcript_region:SL2.40ch06:38752922..38754704- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00003915g0005.1 protein AED:0.08 eAED:0.08 QI:75|1|0.66|1|1|1|3|0|318; (*GB) gi|255538264|ref|XP_002510197.1| (e_value=2e-119) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G45688.1 (e_value=9e-100) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:17191502-17192870 FORWARD LENGTH=342;; (*ITAG) Solyc02g091000.2.1 (e_value=1e-167) genomic_reference:SL2.40ch02 gene_region:47025388-47027277 transcript_region:SL2.40ch02:47025388..47027277- functional_description:"Harpin-induced protein (AHRD V1 ***- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00003915g0102.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|360 NbS00021765g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|0.66|3|0|477; (*GB) gi|156103422|gb|ABU48859.1| (e_value=0.0) xylosyltransferase 2 [Nicotiana benthamiana];; (*SWP) sp|Q9LDH0|XYLT_ARATH (e_value=0.0) Beta-(1,2)-xylosyltransferase OS=Arabidopsis thaliana GN=XYLT PE=1 SV=1;; (*TAIR) AT5G55500.1 (e_value=0.0) | Symbols: ATXYLT, XYLT | beta-1,2-xylosyltransferase | chr5:22482386-22484417 FORWARD LENGTH=534;; (*ITAG) Solyc07g065140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64258419-64262021 transcript_region:SL2.40ch07:64258419..64262021- go_terms:GO:0042285 functional_description:"Beta-1 2-xylosyltransferase (AHRD V1 **** Q2UVB5_SOLTU)"; GO:0042285 NbS00021765g0002.1 protein AED:0.56 eAED:0.64 QI:0|0|0|0.33|1|1|12|0|694; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc09g011950.1.1 (e_value=4e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:5229051-5233625 transcript_region:SL2.40ch09:5229051..5233625- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00024907g0005.1 protein AED:0.46 eAED:0.46 QI:0|1|0.33|1|1|1|3|179|96 NbS00024907g0001.1 protein AED:0.00 eAED:0.00 QI:93|-1|0|1|-1|1|1|0|301; (*GB) gi|224068414|ref|XP_002302739.1| (e_value=3e-119) glycosyltransferase, CAZy family GT8 [Populus trichocarpa];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=5e-118) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=4e-119) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc09g075560.1.1 (e_value=8e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62750328-62751431 transcript_region:SL2.40ch09:62750328..62751431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00036368g0018.1 protein AED:0.59 eAED:0.61 QI:0|0.4|0.16|0.66|1|1|6|0|137; (*GB) gi|224120300|ref|XP_002318295.1| (e_value=9e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31170.4 (e_value=6e-45) | Symbols: SRX | sulfiredoxin | chr1:11133521-11134686 FORWARD LENGTH=198;; (*ITAG) Solyc02g068710.2.1 (e_value=7e-58) genomic_reference:SL2.40ch02 gene_region:33214656-33217727 transcript_region:SL2.40ch02:33214656..33217727+ go_terms:GO:0032542 functional_description:"ParB domain protein nuclease (AHRD V1 **-- B8HYI6_CYAP4); contains Interpro domain(s) IPR016692 Sulfiredoxin "; GO:0032542 NbS00036368g0017.1 protein AED:0.04 eAED:0.04 QI:294|1|0.33|1|1|1|3|0|154; (*GB) gi|225423730|ref|XP_002278252.1| (e_value=6e-87) PREDICTED: glycine cleavage system H protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q39732|GCSH_FLAAN (e_value=4e-67) Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1;; (*TAIR) AT2G35120.1 (e_value=1e-79) | Symbols: | Single hybrid motif superfamily protein | chr2:14805913-14807274 REVERSE LENGTH=156;; (*ITAG) Solyc02g068740.2.1 (e_value=4e-95) genomic_reference:SL2.40ch02 gene_region:33249523-33253471 transcript_region:SL2.40ch02:33249523..33253471- go_terms:GO:0019464,GO:0005960 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 ***- B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0019464,GO:0005960 NbS00036368g0019.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.71|0.85|0.33|0.57|7|377|247; (*GB) gi|297737985|emb|CBI27186.3| (e_value=1e-67) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42856|ZB14_MAIZE (e_value=1e-58) 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1;; (*TAIR) AT1G31160.1 (e_value=7e-67) | Symbols: HINT 2 | HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 | chr1:11122880-11124106 REVERSE LENGTH=187;; (*ITAG) Solyc02g068700.2.1 (e_value=6e-92) genomic_reference:SL2.40ch02 gene_region:33210914-33214494 transcript_region:SL2.40ch02:33210914..33214494- go_terms:GO:0042803 functional_description:"Histidine triad (HIT) protein (AHRD V1 **-- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein "; GO:0042803 NbS00036368g0010.1 protein AED:0.53 eAED:0.57 QI:0|0.5|0.4|0.8|1|1|5|0|219; (*GB) gi|297737983|emb|CBI27184.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5S2C4|NCKP1_ARATH (e_value=7e-39) Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2;; (*TAIR) AT2G35110.1 (e_value=5e-40) | Symbols: GRL, NAP1, NAPP | transcription activators | chr2:14795970-14803525 REVERSE LENGTH=1425;; (*ITAG) Solyc02g068720.2.1 (e_value=3e-53) genomic_reference:SL2.40ch02 gene_region:33218147-33235322 transcript_region:SL2.40ch02:33218147..33235322- go_terms:GO:0005515,GO:0016563 functional_description:"Nck-associated protein 1 (AHRD V1 **-- B7ZGK5_LOTJA); contains Interpro domain(s) IPR019137 Nck-associated protein 1 "; GO:0005515,GO:0016563 NbS00036368g0001.1 protein AED:0.54 eAED:0.93 QI:0|0|0|0.66|1|1|3|0|233; (*GB) gi|224120312|ref|XP_002318298.1| (e_value=9e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6ZBH9|NCKP1_ORYSJ (e_value=5e-61) Probable protein NAP1 OS=Oryza sativa subsp. japonica GN=NAP1 PE=2 SV=1;; (*TAIR) AT2G35110.1 (e_value=2e-54) | Symbols: GRL, NAP1, NAPP | transcription activators | chr2:14795970-14803525 REVERSE LENGTH=1425;; (*ITAG) Solyc02g068720.2.1 (e_value=4e-123) genomic_reference:SL2.40ch02 gene_region:33218147-33235322 transcript_region:SL2.40ch02:33218147..33235322- go_terms:GO:0005515,GO:0016563 functional_description:"Nck-associated protein 1 (AHRD V1 **-- B7ZGK5_LOTJA); contains Interpro domain(s) IPR019137 Nck-associated protein 1 "; GO:0005515,GO:0016563 NbS00013016g0015.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|240; (*GB) gi|147789556|emb|CAN60849.1| (e_value=1e-51) hypothetical protein VITISV_023571 [Vitis vinifera];; (*ITAG) Solyc05g046310.2.1 (e_value=1e-101) genomic_reference:SL2.40ch05 gene_region:57671075-57673686 transcript_region:SL2.40ch05:57671075..57673686- functional_description:"Genomic DNA chromosome 5 P1 clone MVP2 (AHRD V1 ***- O65233_ARATH)"; NbS00013016g0019.1 protein AED:0.17 eAED:0.17 QI:411|0.33|0.5|1|0|0.5|4|487|138; (*GB) gi|118481875|gb|ABK92874.1| (e_value=2e-45) unknown [Populus trichocarpa];; (*TAIR) AT2G32280.1 (e_value=6e-47) | Symbols: | Protein of unknown function (DUF1218) | chr2:13713210-13713977 FORWARD LENGTH=163;; (*ITAG) Solyc05g046130.2.1 (e_value=6e-73) genomic_reference:SL2.40ch05 gene_region:57409466-57412203 transcript_region:SL2.40ch05:57409466..57412203- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00013016g0017.1 protein AED:0.11 eAED:0.11 QI:338|0.66|0.71|1|1|1|7|0|899; (*GB) gi|356892154|gb|AET41696.1| (e_value=0.0) formin [Solanum lycopersicum];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=0.0) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=0.0) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc05g046120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:57402599-57408915 transcript_region:SL2.40ch05:57402599..57408915+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00013211g0008.1 protein AED:0.24 eAED:0.24 QI:117|1|1|1|1|1|2|430|157 NbS00013211g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|659; (*GB) gi|225469990|ref|XP_002272059.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Vitis vinifera];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=0.0) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00044138g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.85|0.75|1|0|0|8|407|170; (*GB) gi|62867578|emb|CAI84654.1| (e_value=2e-94) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G14450.1 (e_value=2e-80) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc07g056590.2.1 (e_value=5e-98) genomic_reference:SL2.40ch07 gene_region:61723085-61730619 transcript_region:SL2.40ch07:61723085..61730619+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 *-** B0WMK0_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00013339g0004.1 protein AED:0.18 eAED:0.19 QI:0|0.25|0|0.6|0.5|0.4|5|0|429; (*GB) gi|224063721|ref|XP_002301271.1| (e_value=8e-134) predicted protein [Populus trichocarpa];; (*TAIR) AT3G60680.1 (e_value=1e-78) | Symbols: | Plant protein of unknown function (DUF641) | chr3:22430246-22431745 FORWARD LENGTH=499;; (*ITAG) Solyc05g050930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60306634-60308052 transcript_region:SL2.40ch05:60306634..60308052+ functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAQ7_GOSRA); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00042068g0005.1 protein AED:0.10 eAED:0.10 QI:31|0.5|0.33|0.66|0.5|0.33|3|0|74 NbS00044598g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225453160|ref|XP_002274476.1| (e_value=6e-63) PREDICTED: calcium-binding allergen Ole e 8 [Vitis vinifera];; (*SWP) sp|Q9C8Y1|CML23_ARATH (e_value=4e-53) Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1;; (*TAIR) AT1G66400.1 (e_value=3e-54) | Symbols: CML23 | calmodulin like 23 | chr1:24770856-24771329 REVERSE LENGTH=157;; (*ITAG) Solyc02g091500.1.1 (e_value=2e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47358016-47358486 transcript_region:SL2.40ch02:47358016..47358486+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6TGU5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00044598g0015.1 protein AED:0.09 eAED:0.10 QI:196|0.66|0.71|1|1|1|7|457|379; (*GB) gi|350534424|ref|NP_001234396.1| (e_value=0.0) fructokinase 3 [Solanum lycopersicum];; (*SWP) sp|Q9LNE3|SCRK2_ARATH (e_value=3e-103) Probable fructokinase-2 OS=Arabidopsis thaliana GN=At1g06030 PE=2 SV=1;; (*TAIR) AT1G66430.1 (e_value=2e-157) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:24778400-24780393 FORWARD LENGTH=384;; (*ITAG) Solyc02g091490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47344370-47349179 transcript_region:SL2.40ch02:47344370..47349179- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase 3 (AHRD V1 **-* Q6VWJ5_SOLLC); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0008865,GO:0008959 NbS00044598g0014.1 protein AED:0.23 eAED:0.23 QI:384|1|1|1|0.8|0.66|6|293|441; (*GB) gi|189345250|gb|ACD92981.1| (e_value=0.0) VTC2-like protein [Nicotiana tabacum];; (*SWP) sp|Q8RWE8|GGAP1_ARATH (e_value=0.0) GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1;; (*TAIR) AT4G26850.1 (e_value=0.0) | Symbols: VTC2 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | chr4:13499262-13501145 REVERSE LENGTH=442;; (*ITAG) Solyc02g091510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47361290-47366318 transcript_region:SL2.40ch02:47361290..47366318- go_terms:GO:0005515 functional_description:"GDP-L-galactose phosphorylase 2"; GO:0005515 NbS00044598g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|59798467|sp|Q8VWY6.1|POLC1_TOBAC (e_value=2e-53) RecName: Full=Polcalcin Nic t 1; AltName: Full=Calcium-binding pollen allergen Nic t 1; AltName: Allergen=Nic t 1;; (*SWP) sp|Q8VWY6|POLC1_TOBAC (e_value=6e-55) Polcalcin Nic t 1 OS=Nicotiana tabacum GN=Nict1 PE=1 SV=1;; (*TAIR) AT3G03430.1 (e_value=6e-36) | Symbols: | Calcium-binding EF-hand family protein | chr3:814481-814732 FORWARD LENGTH=83;; (*ITAG) Solyc02g091480.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47343749-47344003 transcript_region:SL2.40ch02:47343749..47344003- go_terms:GO:0005509 functional_description:"Calmodulin 4 (AHRD V1 ***- Q6WEH7_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00031475g0001.1 protein AED:0.16 eAED:0.34 QI:40|0|0.5|1|0|0|2|101|73 NbS00021063g0002.1 protein AED:0.03 eAED:0.03 QI:63|1|0.66|1|0|0.33|3|0|262; (*GB) gi|359496065|ref|XP_002263026.2| (e_value=1e-107) PREDICTED: polyneuridine-aldehyde esterase-like [Vitis vinifera];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=2e-80) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT3G50440.1 (e_value=7e-100) | Symbols: ATMES10, MES10 | methyl esterase 10 | chr3:18717392-18718435 REVERSE LENGTH=288;; (*ITAG) Solyc03g044740.2.1 (e_value=4e-153) genomic_reference:SL2.40ch03 gene_region:14424754-14429593 transcript_region:SL2.40ch03:14424754..14429593+ go_terms:GO:0080032 functional_description:"Methyl jasmonate esterase (AHRD V1 **-* Q56SE1_SOLTU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080032 NbS00023637g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.90|1|0.9|0.90|11|240|594; (*GB) gi|226492934|ref|NP_001150156.1| (e_value=0.0) LOC100283785 [Zea mays];; (*SWP) sp|Q38845|2AAA_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1;; (*TAIR) AT3G25800.2 (e_value=0.0) | Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9423036-9425783 REVERSE LENGTH=544;; (*ITAG) Solyc05g009600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3800023-3807291 transcript_region:SL2.40ch05:3800023..3807291+ go_terms:GO:0017018 functional_description:"Phosphatase 2A regulatory A subunit (AHRD V1 **** Q9S7C5_ORYSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017018 NbS00014430g0006.1 protein AED:0.59 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|60; (*ITAG) Solyc08g081090.1.1 (e_value=8e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61366803-61368353 transcript_region:SL2.40ch08:61366803..61368353+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 7 (AHRD V1 ***- B5X4W8_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00014430g0008.1 protein AED:0.17 eAED:0.18 QI:501|0.75|0.77|1|0.87|0.77|9|0|625; (*GB) gi|297742520|emb|CBI34669.3| (e_value=1e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q10442|YDE9_SCHPO (e_value=2e-24) Uncharacterized mitochondrial carrier C12B10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.09 PE=2 SV=1;; (*TAIR) AT4G11440.1 (e_value=7e-105) | Symbols: | Mitochondrial substrate carrier family protein | chr4:6955850-6958553 FORWARD LENGTH=628;; (*ITAG) Solyc08g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61351618-61357050 transcript_region:SL2.40ch08:61351618..61357050- go_terms:GO:0016020 functional_description:"Mitochondrial carrier family (AHRD V1 *-*- C1MZ50_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00014430g0013.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|3|0|416; (*GB) gi|225462303|ref|XP_002265206.1| (e_value=1e-101) PREDICTED: solute carrier family 22 member 21-like [Vitis vinifera];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=1e-91) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=8e-93) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc08g081090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61366803-61368353 transcript_region:SL2.40ch08:61366803..61368353+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 7 (AHRD V1 ***- B5X4W8_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00014430g0011.1 protein AED:0.51 eAED:0.67 QI:0|0|0|0.66|0|0|3|0|69 NbS00023265g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|256860445|gb|ACV32157.1| (e_value=4e-76) chloroplast plastocyanin precursor [Nicotiana benthamiana];; (*SWP) sp|P17340|PLAS_SOLLC (e_value=1e-69) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G20340.1 (e_value=1e-59) | Symbols: DRT112, PETE2 | Cupredoxin superfamily protein | chr1:7042770-7043273 REVERSE LENGTH=167;; (*ITAG) Solyc04g082010.1.1 (e_value=8e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- go_terms:GO:0009055 functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "; GO:0009055 NbS00023265g0006.1 protein AED:0.42 eAED:0.53 QI:33|0.5|0|1|1|1|3|0|144; (*GB) gi|365222930|gb|AEW69817.1| (e_value=1e-86) Hop-interacting protein THI120 [Solanum lycopersicum];; (*TAIR) AT5G27280.1 (e_value=3e-66) | Symbols: | Zim17-type zinc finger protein | chr5:9617548-9618369 FORWARD LENGTH=212;; (*ITAG) Solyc04g082020.2.1 (e_value=3e-89) genomic_reference:SL2.40ch04 gene_region:63421329-63424627 transcript_region:SL2.40ch04:63421329..63424627- functional_description:"DNL zinc finger family protein (AHRD V1 **-- B6TGI7_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00023265g0007.1 protein AED:0.05 eAED:0.05 QI:186|0.8|0.81|0.90|0.7|0.63|11|1670|852; (*GB) gi|225459766|ref|XP_002284764.1| (e_value=0.0) PREDICTED: phospholipase D delta-like [Vitis vinifera];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.1 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=868;; (*ITAG) Solyc04g082000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63410821-63419107 transcript_region:SL2.40ch04:63410821..63419107+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00007712g0001.1 protein AED:0.17 eAED:0.19 QI:1134|0.33|0.75|1|0|0.5|4|717|102; (*GB) gi|356516033|ref|XP_003526701.1| (e_value=5e-46) PREDICTED: uncharacterized protein HI_0077-like [Glycine max];; (*TAIR) AT5G04520.1 (e_value=2e-45) | Symbols: | Protein of unknown function DUF455 | chr5:1290012-1291063 REVERSE LENGTH=291;; (*ITAG) Solyc11g007710.1.1 (e_value=4e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1943133-1945777 transcript_region:SL2.40ch11:1943133..1945777+ functional_description:"DUF455 domain-containing protein (AHRD V1 **-- C1G075_PARBD); contains Interpro domain(s) IPR011197 Protein of unknown function UCP012318 "; NbS00007712g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.95|0.86|1|0.81|0.82|23|342|626; (*GB) gi|359486892|ref|XP_002262782.2| (e_value=0.0) PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q0WQF7|OPD21_ARATH (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2;; (*TAIR) AT3G52200.1 (e_value=0.0) | Symbols: LTA3 | Dihydrolipoamide acetyltransferase, long form protein | chr3:19360317-19366091 FORWARD LENGTH=637;; (*ITAG) Solyc11g007720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1946450-1963262 transcript_region:SL2.40ch11:1946450..1963262- go_terms:GO:0008152,GO:0045254 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0008152,GO:0045254 NbS00007712g0010.1 protein AED:0.24 eAED:0.41 QI:72|0|0|1|0|0|2|0|106; (*GB) gi|11465994|ref|NP_054536.1| (e_value=9e-54) ribosomal protein L16 [Nicotiana tabacum];; (*SWP) sp|P06384|RK16_TOBAC (e_value=3e-55) 50S ribosomal protein L16, chloroplastic OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1;; (*ITAG) ATCG00790.1 (e_value=1e-49) | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652 REVERSE LENGTH=135;; (*ITAG) Solyc01g007600.2.1 (e_value=9e-55) genomic_reference:SL2.40ch01 gene_region:1878019-1878953 transcript_region:SL2.40ch01:1878019..1878953- go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L16 chloroplastic (AHRD V1 ***- D3WCG3_NEROL); contains Interpro domain(s) IPR000114 Ribosomal protein L16 "; GO:0005840,GO:0006412 NbS00028397g0017.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|0.5|0.33|3|0|228; (*GB) gi|225464796|ref|XP_002268998.1| (e_value=1e-71) PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Vitis vinifera];; (*SWP) sp|Q9LIE5|FHY3_ARATH (e_value=2e-56) Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1;; (*TAIR) AT3G22170.2 (e_value=1e-57) | Symbols: FHY3 | far-red elongated hypocotyls 3 | chr3:7822359-7825414 REVERSE LENGTH=839;; (*ITAG) Solyc07g043260.2.1 (e_value=6e-120) genomic_reference:SL2.40ch07 gene_region:54245497-54248942 transcript_region:SL2.40ch07:54245497..54248942- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 2 (AHRD V1 ***- FRS2_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00028397g0013.1 protein AED:0.36 eAED:0.38 QI:12|0.62|0.66|1|0.62|0.55|9|361|411; (*GB) gi|225464803|ref|XP_002268503.1| (e_value=3e-74) PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Vitis vinifera];; (*SWP) sp|Q9LIE5|FHY3_ARATH (e_value=4e-57) Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1;; (*TAIR) AT3G22170.2 (e_value=3e-58) | Symbols: FHY3 | far-red elongated hypocotyls 3 | chr3:7822359-7825414 REVERSE LENGTH=839;; (*ITAG) Solyc07g043270.2.1 (e_value=2e-100) genomic_reference:SL2.40ch07 gene_region:54255106-54265427 transcript_region:SL2.40ch07:54255106..54265427- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00028397g0018.1 protein AED:0.24 eAED:0.24 QI:446|0.84|0.92|1|0.84|0.78|14|430|397; (*GB) gi|350538297|ref|NP_001234336.1| (e_value=0.0) gamma aminobutyrate transaminase 1, mitochondrial [Solanum lycopersicum];; (*SWP) sp|Q84P54|GATP1_SOLLC (e_value=0.0) Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum GN=GABA-TP1 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=5e-161) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc07g043310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54313638-54320300 transcript_region:SL2.40ch07:54313638..54320300+ go_terms:GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- D2KZ08_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00028397g0110.1 protein AED:0.09 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.8|5|0|358 NbS00028397g0107.1 protein AED:0.22 eAED:0.45 QI:0|0|0|1|1|1|2|0|180 NbC23454639g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|53 NbS00003688g0006.1 protein AED:0.25 eAED:0.25 QI:36|1|1|1|1|1|7|101|264; (*GB) gi|359496934|ref|XP_002263959.2| (e_value=2e-118) PREDICTED: UPF0308 protein At2g37240, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZUU2|U308_ARATH (e_value=4e-22) UPF0308 protein At2g37240, chloroplastic OS=Arabidopsis thaliana GN=At2g37240 PE=2 SV=2;; (*TAIR) AT5G65840.1 (e_value=3e-104) | Symbols: | Thioredoxin superfamily protein | chr5:26344097-26346057 REVERSE LENGTH=275;; (*ITAG) Solyc02g064550.2.1 (e_value=1e-138) genomic_reference:SL2.40ch02 gene_region:30245428-30252431 transcript_region:SL2.40ch02:30245428..30252431- functional_description:"C1orf93 homolog (AHRD V1 **-- C1C416_RANCA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00003688g0005.1 protein AED:0.26 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|431; (*GB) gi|125600879|gb|EAZ40455.1| (e_value=1e-25) hypothetical protein OsJ_24907 [Oryza sativa Japonica Group];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=1e-19) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G07810.2 (e_value=5e-24) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495102 FORWARD LENGTH=495;; (*ITAG) Solyc02g064540.1.1 (e_value=5e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30239068-30241420 transcript_region:SL2.40ch02:30239068..30241420- go_terms:GO:0008266,GO:0003729 functional_description:"RNA-binding protein (AHRD V1 *--* B6TAS3_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266,GO:0003729 NbS00050138g0004.1 protein AED:0.12 eAED:0.20 QI:0|0.5|0.4|0.8|0.75|0.8|5|0|292; (*GB) gi|357495001|ref|XP_003617789.1| (e_value=9e-97) Pectinesterase [Medicago truncatula];; (*SWP) sp|Q9FM79|PME62_ARATH (e_value=5e-93) Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1;; (*TAIR) AT5G55590.1 (e_value=4e-94) | Symbols: QRT1 | Pectin lyase-like superfamily protein | chr5:22519911-22521699 FORWARD LENGTH=380;; (*ITAG) Solyc07g065350.1.1 (e_value=4e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64373922-64376605 transcript_region:SL2.40ch07:64373922..64376605+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S9Q8_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00000743g0009.1 protein AED:0.24 eAED:0.46 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|296083798|emb|CBI24015.3| (e_value=3e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=8e-58) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=6e-59) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc12g096510.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000743g0015.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.33|0.25|4|0|292; (*GB) gi|225430543|ref|XP_002285587.1| (e_value=8e-131) PREDICTED: peroxidase 46 isoform 1 [Vitis vinifera];; (*SWP) sp|O81772|PER46_ARATH (e_value=1e-114) Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1;; (*TAIR) AT2G24800.1 (e_value=7e-113) | Symbols: | Peroxidase superfamily protein | chr2:10571255-10572570 REVERSE LENGTH=329;; (*ITAG) Solyc12g096530.1.1 (e_value=2e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63751473-63754937 transcript_region:SL2.40ch12:63751473..63754937- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- D7MRK0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00000743g0004.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|1|1|3|0|439; (*GB) gi|359475902|ref|XP_002283433.2| (e_value=5e-168) PREDICTED: protein TIC 55, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O49931|TIC55_PEA (e_value=6e-162) Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1;; (*TAIR) AT2G24820.1 (e_value=5e-146) | Symbols: TIC55-II | translocon at the inner envelope membrane of chloroplasts 55-II | chr2:10575038-10576829 FORWARD LENGTH=539;; (*ITAG) Solyc12g096550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63760005-63762826 transcript_region:SL2.40ch12:63760005..63762826- go_terms:GO:0055114 functional_description:"Pheophorbide a oxygenase family (AHRD V1 **-- B4VSS3_9CYAN); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0055114 NbS00000743g0002.1 protein AED:0.27 eAED:0.27 QI:390|0.88|0.9|1|0.88|0.8|10|356|288; (*GB) gi|225430569|ref|XP_002263210.1| (e_value=4e-141) PREDICTED: probable protein phosphatase 2C 59 [Vitis vinifera];; (*SWP) sp|Q8RXV3|P2C59_ARATH (e_value=1e-134) Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1;; (*TAIR) AT4G31750.1 (e_value=1e-135) | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:15364657-15367207 REVERSE LENGTH=311;; (*ITAG) Solyc12g096520.1.1 (e_value=2e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63742671-63748535 transcript_region:SL2.40ch12:63742671..63748535- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8S8Z0_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00005673g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.63|1|0.8|0.81|11|273|722; (*GB) gi|356547867|ref|XP_003542326.1| (e_value=0.0) PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00005673g0009.1 protein AED:0.32 eAED:0.36 QI:52|0|0.33|1|0.5|0.33|3|92|243; (*GB) gi|255764587|gb|ACU33853.1| (e_value=2e-113) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-48) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=3e-49) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=8e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005673g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|0.5|0.33|3|61|192; (*GB) gi|22128587|gb|AAM52339.1| (e_value=6e-39) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-19) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=9e-20) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00021293g0006.1 protein AED:0.03 eAED:0.04 QI:0|0.6|0.66|1|0.2|0.5|6|1086|278; (*GB) gi|1350821|sp|P49314.1|ROC2_NICPL (e_value=2e-114) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor;; (*SWP) sp|P49314|ROC2_NICPL (e_value=7e-116) 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT2G37220.1 (e_value=2e-64) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289;; (*ITAG) Solyc10g086150.1.1 (e_value=9e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64403180-64404803 transcript_region:SL2.40ch10:64403180..64404803- go_terms:GO:0043047 functional_description:"Single-stranded DNA binding protein (AHRD V1 **-* Q8W214_SOLTU); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0043047 NbS00017645g0004.1 protein AED:0.22 eAED:0.22 QI:217|0.75|0.4|1|1|1|5|0|697; (*GB) gi|255587028|ref|XP_002534105.1| (e_value=0.0) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=0.0) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=0.0) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc06g076040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43599876-43605010 transcript_region:SL2.40ch06:43599876..43605010- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00037772g0001.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|591; (*GB) gi|356557535|ref|XP_003547071.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC547549 [Glycine max];; (*ITAG) Solyc01g104790.2.1 (e_value=2e-145) genomic_reference:SL2.40ch01 gene_region:84917081-84919820 transcript_region:SL2.40ch01:84917081..84919820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037772g0009.1 protein AED:0.48 eAED:0.51 QI:0|0|0|0.5|0|0|2|0|95 NbS00012429g0010.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|2|201|215; (*GB) gi|255570960|ref|XP_002526431.1| (e_value=1e-142) protein with unknown function [Ricinus communis];; (*SWP) sp|O04486|RAA2A_ARATH (e_value=1e-136) Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1;; (*TAIR) AT1G09630.1 (e_value=1e-137) | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c | RAB GTPase 11C | chr1:3118350-3119571 REVERSE LENGTH=217;; (*ITAG) Solyc10g045550.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30059252-30065074 transcript_region:SL2.40ch10:30059252..30065074+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00012429g0009.1 protein AED:0.16 eAED:0.16 QI:94|0.66|0.71|1|0.16|0.42|7|342|206; (*GB) gi|4096662|gb|AAD10389.1| (e_value=3e-95) Rab1-like small GTP-binding protein [Petunia x hybrida];; (*SWP) sp|Q9ZRE2|RABD1_ARATH (e_value=6e-80) Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1;; (*TAIR) AT3G11730.1 (e_value=5e-81) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205;; (*ITAG) Solyc01g103370.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:83750652-83755639 transcript_region:SL2.40ch01:83750652..83755639+ go_terms:GO:0007264,GO:0015031,GO:0005525 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525 NbS00044329g0001.1 protein AED:0.27 eAED:0.33 QI:0|0|0|1|0|0|2|0|211; (*GB) gi|225242|prf||1211235CA (e_value=3e-63) ORF 1708;; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=1e-64) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-49) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00014869g0016.1 protein AED:0.02 eAED:0.02 QI:139|0.75|0.8|1|1|1|5|305|386; (*GB) gi|21068893|dbj|BAB93003.1| (e_value=0.0) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q41249|PORA_CUCSA (e_value=0.0) Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1;; (*TAIR) AT5G54190.1 (e_value=0.0) | Symbols: PORA | protochlorophyllide oxidoreductase A | chr5:21991183-21992773 REVERSE LENGTH=405;; (*ITAG) Solyc12g013710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4544984-4547459 transcript_region:SL2.40ch12:4544984..4547459- go_terms:GO:0004745 functional_description:"Protochlorophyllide reductase (AHRD V1 ***- Q8LAV9_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0004745 NbS00014869g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|250; (*GB) gi|328929994|gb|AEB69786.1| (e_value=2e-71) MAKIBISHI 1 [Medicago truncatula];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=1e-43) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=3e-44) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc12g013800.1.1 (e_value=2e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4593932-4596815 transcript_region:SL2.40ch12:4593932..4596815- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014869g0017.1 protein AED:0.08 eAED:0.08 QI:66|1|1|1|0.66|0.75|4|262|253; (*GB) gi|225461387|ref|XP_002284777.1| (e_value=1e-143) PREDICTED: stem-specific protein TSJT1 [Vitis vinifera];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=4e-29) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=2e-144) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc12g013700.1.1 (e_value=3e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4542236-4544315 transcript_region:SL2.40ch12:4542236..4544315+ functional_description:"Aluminum-induced protein-like protein (AHRD V1 ***- Q8S2R9_THEHA)"; NbS00014869g0018.1 protein AED:0.07 eAED:0.12 QI:0|0.66|0.25|1|1|1|4|0|356; (*GB) gi|359473878|ref|XP_003631372.1| (e_value=4e-161) PREDICTED: gibberellin 20 oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q39112|GAOX3_ARATH (e_value=2e-60) Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1;; (*TAIR) AT5G07200.1 (e_value=1e-61) | Symbols: YAP169, GA20OX3, ATGA20OX3 | gibberellin 20-oxidase 3 | chr5:2243835-2245157 REVERSE LENGTH=380;; (*ITAG) Solyc12g013780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4584783-4587211 transcript_region:SL2.40ch12:4584783..4587211- go_terms:GO:0016491 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 ***- A9LY20_SELML); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00014869g0005.1 protein AED:0.27 eAED:0.27 QI:299|1|0.85|1|0.83|0.85|7|418|182; (*GB) gi|255573351|ref|XP_002527602.1| (e_value=1e-69) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G53800.1 (e_value=2e-58) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21848180-21849935 FORWARD LENGTH=351;; (*ITAG) Solyc12g013790.1.1 (e_value=9e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4588483-4591740 transcript_region:SL2.40ch12:4588483..4591740- functional_description:"Genomic DNA chromosome 5 P1 clone MGN6 (AHRD V1 *--- Q9FHZ6_ARATH)"; NbS00030827g0013.1 protein AED:0.18 eAED:0.18 QI:180|0.6|0.5|1|0.2|0.5|6|0|1090; (*GB) gi|225455116|ref|XP_002268775.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-95) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38260.1 (e_value=2e-104) | Symbols: | Protein kinase superfamily protein | chr5:15283692-15285837 REVERSE LENGTH=638;; (*ITAG) Solyc03g007210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1779466-1782208 transcript_region:SL2.40ch03:1779466..1782208+ go_terms:GO:0004675 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004675 NbS00030827g0003.1 protein AED:0.21 eAED:0.22 QI:0|0.5|0.66|1|0|0.33|3|94|264; (*GB) gi|28557342|dbj|BAC57589.1| (e_value=7e-176) membrane located receptor-like protein [Nicotiana tabacum];; (*ITAG) Solyc03g083480.2.1 (e_value=2e-123) genomic_reference:SL2.40ch03 gene_region:46907988-46909219 transcript_region:SL2.40ch03:46907988..46909219+ functional_description:"Receptor-like kinase (AHRD V1 *-*- Q9LL53_ORYSA)"; NbS00030827g0020.1 protein AED:0.23 eAED:0.23 QI:0|0.2|0|1|0.2|0.16|6|0|421; (*GB) gi|359490251|ref|XP_002267774.2| (e_value=9e-105) PREDICTED: probable receptor-like protein kinase At5g39020-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-41) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G66910.1 (e_value=3e-46) | Symbols: | Protein kinase superfamily protein | chr1:24961634-24963941 REVERSE LENGTH=666;; (*ITAG) Solyc03g083470.2.1 (e_value=4e-172) genomic_reference:SL2.40ch03 gene_region:46904470-46906666 transcript_region:SL2.40ch03:46904470..46906666- go_terms:GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0006468 NbS00030827g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|302144047|emb|CBI23152.3| (e_value=6e-53) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FID5|Y5393_ARATH (e_value=2e-33) Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1;; (*TAIR) AT1G66920.2 (e_value=2e-36) | Symbols: | Protein kinase superfamily protein | chr1:24965410-24967432 REVERSE LENGTH=617;; (*ITAG) Solyc03g083470.2.1 (e_value=4e-70) genomic_reference:SL2.40ch03 gene_region:46904470-46906666 transcript_region:SL2.40ch03:46904470..46906666- go_terms:GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0006468 NbS00030827g0021.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.25|0.66|0.75|4|0|188; (*GB) gi|224140639|ref|XP_002323689.1| (e_value=9e-19) bromodomain protein [Populus trichocarpa];; (*ITAG) Solyc09g055660.1.1 (e_value=5e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:39118981-39121727 transcript_region:SL2.40ch09:39118981..39121727+ functional_description:"Bromodomain protein (AHRD V1 *--- B9IGX7_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00030827g0018.1 protein AED:0.25 eAED:0.55 QI:44|0|0|1|0|0|2|0|111; (*GB) gi|11465960|ref|NP_054502.1| (e_value=2e-43) NADH dehydrogenase subunit J [Nicotiana tabacum];; (*SWP) sp|P12201|NDHJ_TOBAC (e_value=5e-45) NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tabacum GN=ndhJ PE=3 SV=1;; (*ITAG) ATCG00420.1 (e_value=2e-38) | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=158;; (*ITAG) Solyc01g007290.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1845511-1845987 transcript_region:SL2.40ch01:1845511..1845987- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit J (AHRD V1 ***- NDHJ_TRIEI); contains Interpro domain(s) IPR020396 NADH:ubiquinone oxidoreductase, 30 kDa subunit, conserved site IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00044868g0006.1 protein AED:0.03 eAED:0.03 QI:61|1|0.6|1|0.5|0.4|5|0|459; (*GB) gi|359492423|ref|XP_002284303.2| (e_value=3e-120) PREDICTED: uncharacterized rhomboid protein AN10929-like [Vitis vinifera];; (*TAIR) AT1G77860.1 (e_value=2e-85) | Symbols: KOM | Rhomboid-related intramembrane serine protease family protein | chr1:29282643-29284458 REVERSE LENGTH=351;; (*ITAG) Solyc11g013320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6297116-6299646 transcript_region:SL2.40ch11:6297116..6299646+ go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 ***- D7KPC1_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00044868g0004.1 protein AED:0.36 eAED:0.37 QI:0|1|0.33|1|1|1|3|0|90; (*GB) gi|356515856|ref|XP_003526613.1| (e_value=2e-56) PREDICTED: auxin transporter-like protein 3-like [Glycine max];; (*SWP) sp|Q9FEL6|LAX3_MEDTR (e_value=9e-57) Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1;; (*TAIR) AT1G77690.1 (e_value=9e-58) | Symbols: LAX3 | like AUX1 3 | chr1:29201232-29203317 REVERSE LENGTH=470;; (*ITAG) Solyc11g013310.1.1 (e_value=7e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6271845-6276669 transcript_region:SL2.40ch11:6271845..6276669+ functional_description:"Auxin transporter-like protein 3 (AHRD V1 ***- B6TPT6_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00041241g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|129560507|dbj|BAF48804.1| (e_value=9e-51) wound-responsive AP2 like factor 2 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=7e-27) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=5e-28) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc10g050970.1.1 (e_value=9e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46749337-46750008 transcript_region:SL2.40ch10:46749337..46750008+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00039054g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|332322086|emb|CCA65978.1| (e_value=3e-56) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=4e-14) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515;; (*ITAG) Solyc00g006170.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00039054g0007.1 protein AED:0.26 eAED:0.26 QI:262|1|0.75|1|1|1|4|0|302; (*GB) gi|225445549|ref|XP_002282244.1| (e_value=1e-103) PREDICTED: uncharacterized protein LOC100250879 [Vitis vinifera];; (*TAIR) AT3G24150.1 (e_value=1e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32295.1); Has 50 Blast hits to 50 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:8724273-8725586 REVERSE LENGTH=343;; (*ITAG) Solyc07g008100.2.1 (e_value=9e-180) genomic_reference:SL2.40ch07 gene_region:2816985-2820874 transcript_region:SL2.40ch07:2816985..2820874+ functional_description:"Genomic DNA chromosome 3 P1 clone MUJ8 (AHRD V1 *-*- Q9LRN2_ARATH)"; NbS00039054g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|215; (*ITAG) Solyc07g008100.2.1 (e_value=2e-97) genomic_reference:SL2.40ch07 gene_region:2816985-2820874 transcript_region:SL2.40ch07:2816985..2820874+ functional_description:"Genomic DNA chromosome 3 P1 clone MUJ8 (AHRD V1 *-*- Q9LRN2_ARATH)"; NbS00047741g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.9|0.81|1|0.7|0.72|11|54|326; (*GB) gi|255555019|ref|XP_002518547.1| (e_value=5e-128) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, putative [Ricinus communis];; (*SWP) sp|A5EK46|LPXD_BRASB (e_value=1e-58) UDP-3-O-acylglucosamine N-acyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=lpxD PE=3 SV=1;; (*TAIR) AT4G21220.1 (e_value=3e-123) | Symbols: | Trimeric LpxA-like enzymes superfamily protein | chr4:11316978-11319067 REVERSE LENGTH=304;; (*ITAG) Solyc03g031560.2.1 (e_value=9e-177) genomic_reference:SL2.40ch03 gene_region:8338640-8345254 transcript_region:SL2.40ch03:8338640..8345254+ go_terms:GO:0016410 functional_description:"UDP-3-O- (AHRD V1 ***- B9RXS8_RICCO); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0016410 NbS00047741g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|356536063|ref|XP_003536560.1| (e_value=8e-93) PREDICTED: protein NDR1-like [Glycine max];; (*SWP) sp|O48915|NDR1_ARATH (e_value=2e-16) Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1;; (*TAIR) AT4G05220.1 (e_value=4e-87) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:2685104-2685784 REVERSE LENGTH=226;; (*ITAG) Solyc02g080100.1.1 (e_value=3e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38983718-38984461 transcript_region:SL2.40ch02:38983718..38984461- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZH6_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00009381g0003.1 protein AED:0.18 eAED:0.18 QI:264|1|0.8|1|1|1|5|0|478; (*GB) gi|255539320|ref|XP_002510725.1| (e_value=0.0) hydroxysteroid dehydrogenase, putative [Ricinus communis];; (*SWP) sp|A8DZE7|D42E1_DANRE (e_value=1e-92) Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1;; (*TAIR) AT2G33630.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14236951-14238734 REVERSE LENGTH=480;; (*ITAG) Solyc04g082750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63907580-63910780 transcript_region:SL2.40ch04:63907580..63910780+ go_terms:GO:0000252 functional_description:"3-beta hydroxysteroid dehydrogenase/isomerase family protein (AHRD V1 **** D7LGC3_ARALY); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0000252 NbS00006020g0018.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|1|0|0.4|5|0|578; (*GB) gi|57013880|ref|YP_173354.1| (e_value=0.0) maturase-related protein [Nicotiana tabacum];; (*ITAG) ATMG00520.1 (e_value=0.0) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00006020g0011.1 protein AED:0.35 eAED:0.35 QI:14|0.88|0.9|1|0.77|0.7|10|590|342; (*GB) gi|356548765|ref|XP_003542770.1| (e_value=7e-124) PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max];; (*SWP) sp|Q42191|OXA1_ARATH (e_value=3e-111) Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2;; (*TAIR) AT5G62050.1 (e_value=2e-112) | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast oxidase assembly 1 (OXA1) | chr5:24924062-24926758 REVERSE LENGTH=429;; (*ITAG) Solyc08g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2747425-2756377 transcript_region:SL2.40ch08:2747425..2756377- go_terms:GO:0015450 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- OXAA_WOLSU); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0015450 NbS00006020g0015.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.4|1|0.75|0.6|5|111|1262; (*GB) gi|297742337|emb|CBI34486.3| (e_value=1e-146) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G53440.1 (e_value=6e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21683679-21687970 REVERSE LENGTH=1181;; (*ITAG) Solyc08g082410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62387542-62395462 transcript_region:SL2.40ch08:62387542..62395462+ functional_description:"Eukaryotic translation initiation factor 3 subunit 10-like (AHRD V1 *--- Q5SN81_ORYSJ)"; NbS00006020g0019.1 protein AED:0.30 eAED:0.30 QI:125|1|1|1|0.66|0.85|7|486|196; (*GB) gi|356497311|ref|XP_003517504.1| (e_value=8e-69) PREDICTED: uncharacterized protein LOC100815497 isoform 1 [Glycine max];; (*TAIR) AT4G10970.4 (e_value=1e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6719718-6721885 REVERSE LENGTH=217;; (*ITAG) Solyc08g008350.2.1 (e_value=4e-95) genomic_reference:SL2.40ch08 gene_region:2775953-2778909 transcript_region:SL2.40ch08:2775953..2778909+ functional_description:"Ubiquitin carrier protein (AHRD V1 ***- B8BAA3_ORYSI)"; NbS00006020g0022.1 protein AED:0.32 eAED:0.32 QI:239|0.5|0.33|0.66|1|1|3|0|89; (*GB) gi|356497315|ref|XP_003517506.1| (e_value=7e-19) PREDICTED: uncharacterized protein LOC100816379 [Glycine max];; (*TAIR) AT4G23885.1 (e_value=3e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12419472-12420240 FORWARD LENGTH=77;; (*ITAG) Solyc08g008330.2.1 (e_value=1e-40) genomic_reference:SL2.40ch08 gene_region:2761119-2765836 transcript_region:SL2.40ch08:2761119..2765836+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006020g0020.1 protein AED:0.37 eAED:0.39 QI:82|0.6|0.5|1|1|1|6|0|227; (*GB) gi|294862567|gb|ADF45668.1| (e_value=1e-124) nucleoside diphosphate kinase 1 [Solanum tuberosum];; (*SWP) sp|Q8LAH8|NDK4_ARATH (e_value=4e-110) Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2;; (*TAIR) AT4G23900.1 (e_value=3e-111) | Symbols: | Nucleoside diphosphate kinase family protein | chr4:12424505-12426318 FORWARD LENGTH=237;; (*ITAG) Solyc08g082430.2.1 (e_value=5e-127) genomic_reference:SL2.40ch08 gene_region:62404261-62407246 transcript_region:SL2.40ch08:62404261..62407246+ go_terms:GO:0008270 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- D5ILC3_SOLTU); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0008270 NbS00006020g0023.1 protein AED:0.17 eAED:0.56 QI:0|0|0|1|0|0|2|0|126; (*GB) gi|57013879|ref|YP_173353.1| (e_value=5e-11) hypothetical protein NitaMp003 [Nicotiana tabacum];; (*ITAG) Solyc00g281110.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20830500-20830868 transcript_region:SL2.40ch00:20830500..20830868- functional_description:"Unknown Protein (AHRD V1)"; NbS00046525g0002.1 protein AED:0.15 eAED:0.15 QI:17|1|1|1|0|0.33|3|1289|88 NbS00036548g0006.1 protein AED:0.22 eAED:0.27 QI:148|0.75|0.77|1|0.75|0.77|9|886|277; (*GB) gi|225438783|ref|XP_002283079.1| (e_value=1e-92) PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O23193|CBSX1_ARATH (e_value=2e-92) CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2;; (*TAIR) AT4G36910.1 (e_value=2e-93) | Symbols: LEJ2, CDCP2 | Cystathionine beta-synthase (CBS) family protein | chr4:17391016-17393218 REVERSE LENGTH=236;; (*ITAG) Solyc02g064950.2.1 (e_value=3e-123) genomic_reference:SL2.40ch02 gene_region:30629517-30635896 transcript_region:SL2.40ch02:30629517..30635896- go_terms:GO:0008152 functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0008152 NbS00024301g0001.1 protein AED:0.25 eAED:0.25 QI:215|1|0.85|1|0.83|0.71|7|0|410; (*GB) gi|359474169|ref|XP_003631410.1| (e_value=2e-168) PREDICTED: uncharacterized protein LOC100247984 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8R1R3|STAR7_MOUSE (e_value=4e-12) StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2;; (*TAIR) AT1G64720.1 (e_value=8e-155) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc03g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45738953-45742666 transcript_region:SL2.40ch03:45738953..45742666+ functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00033230g0101.1 protein AED:0.04 eAED:0.06 QI:0|0.5|0|0.66|1|1|3|0|1393 NbS00033230g0212.1 protein AED:0.24 eAED:0.24 QI:3|0.84|0.78|1|1|0.92|14|0|493 NbS00033230g0211.1 protein AED:0.29 eAED:0.28 QI:0|0.75|0.6|0.8|0.75|0.8|5|513|218 NbS00033230g0215.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|3|0|95 NbS00033230g0214.1 protein AED:0.44 eAED:0.83 QI:53|0|0|1|0|0|2|0|89 NbS00004538g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|4|0|321; (*ITAG) Solyc03g034340.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004538g0102.1 protein AED:0.20 eAED:0.23 QI:0|1|0.5|1|1|1|4|0|329 NbS00004538g0109.1 protein AED:0.52 eAED:0.65 QI:0|0|0|1|1|1|5|0|70 NbS00015459g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|359481188|ref|XP_003632589.1| (e_value=5e-59) PREDICTED: wound-induced protein 1-like [Vitis vinifera];; (*SWP) sp|P20144|WUN1_SOLTU (e_value=3e-15) Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1;; (*TAIR) AT5G01740.1 (e_value=2e-53) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:280793-281281 FORWARD LENGTH=162;; (*ITAG) Solyc09g014940.1.1 (e_value=6e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:7253764-7254258 transcript_region:SL2.40ch09:7253764..7254258- functional_description:"Wound-induced protein 1 (AHRD V1 ***- WUN1_SOLTU); contains Interpro domain(s) IPR009798 Wound-induced protein, Wun1 "; NbS00019630g0001.1 protein AED:0.08 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|235; (*ITAG) Solyc11g008750.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2931453-2932136 transcript_region:SL2.40ch11:2931453..2932136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000393g0021.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.44|0.88|0.87|0.88|9|267|823; (*GB) gi|255546473|ref|XP_002514296.1| (e_value=0.0) site-1 protease, putative [Ricinus communis];; (*SWP) sp|Q9WTZ2|MBTP1_MOUSE (e_value=0.0) Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=0.0) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00000393g0019.1 protein AED:0.26 eAED:0.30 QI:0|0|0|0.4|0.75|0.6|5|0|269; (*ITAG) Solyc12g044970.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00000393g0014.1 protein AED:0.35 eAED:0.36 QI:0|0.5|0.28|0.85|0.83|0.71|7|0|224; (*GB) gi|296086079|emb|CBI31520.3| (e_value=1e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VYK4|NFYB8_ARATH (e_value=1e-82) Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1;; (*TAIR) AT2G37060.3 (e_value=7e-84) | Symbols: NF-YB8 | nuclear factor Y, subunit B8 | chr2:15576336-15577660 FORWARD LENGTH=173;; (*ITAG) Solyc09g007290.2.1 (e_value=2e-77) genomic_reference:SL2.40ch09 gene_region:886803-890202 transcript_region:SL2.40ch09:886803..890202+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6UBN3_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00000393g0018.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.66|1|1|6|0|345; (*GB) gi|356503698|ref|XP_003520642.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720-like [Glycine max];; (*SWP) sp|C0LGI2|Y1677_ARATH (e_value=5e-109) Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1;; (*TAIR) AT2G37050.1 (e_value=7e-180) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15569290-15573477 FORWARD LENGTH=933;; (*ITAG) Solyc09g007280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:872417-881832 transcript_region:SL2.40ch09:872417..881832+ go_terms:GO:0001653,GO:0004675 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0001653,GO:0004675 NbS00043639g0008.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|574; (*GB) gi|296085423|emb|CBI29155.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40319876-40322691 transcript_region:SL2.40ch02:40319876..40322691+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00025109g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|359487259|ref|XP_003633549.1| (e_value=0.0) PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vitis vinifera];; (*SWP) sp|Q00874|DR100_ARATH (e_value=3e-158) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT3G20820.1 (e_value=1e-159) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:7280930-7282027 FORWARD LENGTH=365;; (*ITAG) Solyc11g056680.1.1 (e_value=6e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45139882-45140976 transcript_region:SL2.40ch11:45139882..45140976+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004370g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|255564074|ref|XP_002523035.1| (e_value=8e-115) glucosyl/glucuronosyl transferases, putative [Ricinus communis];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=1e-94) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G65550.1 (e_value=3e-52) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26198410-26199810 REVERSE LENGTH=466;; (*ITAG) Solyc11g007370.1.1 (e_value=5e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1729484-1730818 transcript_region:SL2.40ch11:1729484..1730818+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00004370g0032.1 protein AED:0.23 eAED:0.26 QI:0|0.69|0.28|0.92|0.61|0.5|14|0|1072; (*GB) gi|359494712|ref|XP_003634825.1| (e_value=2e-64) PREDICTED: uncharacterized protein LOC100853636 [Vitis vinifera];; (*SWP) sp|Q9S7V4|HA22A_ARATH (e_value=1e-31) HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1;; (*TAIR) AT1G74520.1 (e_value=1e-32) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177;; (*ITAG) Solyc10g047670.1.1 (e_value=3e-180) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:37073000-37077377 transcript_region:SL2.40ch10:37073000..37077377+ go_terms:GO:0008270,GO:0005622 functional_description:"Receptor expression-enhancing protein 2 (AHRD V1 *--- B2WDX2_PYRTR); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0008270,GO:0005622 NbS00004370g0018.1 protein AED:0.51 eAED:0.52 QI:0|0|0|0.33|1|1|3|0|174 NbS00004370g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|300; (*GB) gi|255552463|ref|XP_002517275.1| (e_value=1e-82) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=1e-21) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G10760.1 (e_value=5e-69) | Symbols: | Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335;; (*ITAG) Solyc10g078310.1.1 (e_value=9e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59464367-59465239 transcript_region:SL2.40ch10:59464367..59465239- go_terms:GO:0045449 functional_description:"Two-component response regulator ARR11 (AHRD V1 *--- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00004370g0039.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|78191406|gb|ABB29924.1| (e_value=7e-74) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P48006|EF1D1_ARATH (e_value=6e-73) Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2;; (*TAIR) AT1G30230.1 (e_value=4e-74) | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr1:10639286-10640515 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=1e-78) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00004370g0036.1 protein AED:0.11 eAED:0.11 QI:196|1|1|1|0.72|0.66|12|625|994; (*GB) gi|359481434|ref|XP_002277745.2| (e_value=0.0) PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Vitis vinifera];; (*SWP) sp|Q9LET7|CI111_ARATH (e_value=0.0) Calmodulin-interacting protein 111 OS=Arabidopsis thaliana GN=CIP111 PE=1 SV=1;; (*TAIR) AT3G56690.1 (e_value=0.0) | Symbols: CIP111 | Cam interacting protein 111 | chr3:20993869-20998531 REVERSE LENGTH=1022;; (*ITAG) Solyc10g078320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59468277-59476018 transcript_region:SL2.40ch10:59468277..59476018- go_terms:GO:0005524,GO:0017111 functional_description:"AAA family ATPase CDC48 subfamily (AHRD V1 *--- D7D9J0_STAHD); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00004370g0034.1 protein AED:0.13 eAED:0.13 QI:42|0.62|0.66|1|1|1|9|0|512; (*GB) gi|54873553|gb|AAV41031.1| (e_value=0.0) cyclin B-like protein [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=0.0) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT2G26760.1 (e_value=2e-134) | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401551-11403205 FORWARD LENGTH=387;; (*ITAG) Solyc10g078330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59478206-59480869 transcript_region:SL2.40ch10:59478206..59480869- go_terms:GO:0005634 functional_description:"Cyclin B-like protein (AHRD V1 ***- Q5U8T5_9SOLA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0005634 NbS00004370g0008.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|297796031|ref|XP_002865900.1| (e_value=6e-33) sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G52190.1 (e_value=6e-33) | Symbols: | Sugar isomerase (SIS) family protein | chr5:21201817-21202443 REVERSE LENGTH=208;; (*ITAG) Solyc03g025990.1.1 (e_value=1e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7788120-7788731 transcript_region:SL2.40ch03:7788120..7788731+ functional_description:"Hexulose-6-phosphate isomerase (AHRD V1 **-- Q2RUM7_RHORT)"; NbS00004370g0004.1 protein AED:0.10 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|450; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=2e-86) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=2e-59) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=2e-71) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc05g014330.1.1 (e_value=6e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8165111-8166406 transcript_region:SL2.40ch05:8165111..8166406+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00011653g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|508; (*GB) gi|224713825|gb|ACN62127.1| (e_value=0.0) tryptophan decarboxylase [Capsicum annuum];; (*SWP) sp|P17770|DDC_CATRO (e_value=0.0) Aromatic-L-amino-acid decarboxylase OS=Catharanthus roseus GN=TDC PE=2 SV=1;; (*TAIR) AT2G20340.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490;; (*ITAG) Solyc07g054860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60367032-60368546 transcript_region:SL2.40ch07:60367032..60368546+ go_terms:GO:0004058 functional_description:"Aromatic amino acid decarboxylase (AHRD V1 **** D4NUX2_CIMRA); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase "; GO:0004058 NbS00011653g0005.1 protein AED:0.76 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|128 NbS00011653g0007.1 protein AED:0.31 eAED:0.43 QI:0|0|0|1|0|0|2|0|199; (*ITAG) Solyc07g064380.2.1 (e_value=4e-18) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00001667g0004.1 protein AED:0.37 eAED:0.37 QI:24|0.85|0.62|0.87|0.71|0.75|8|0|282; (*GB) gi|359358706|gb|AEV40816.1| (e_value=0.0) sulfite oxidase [Nicotiana benthamiana];; (*SWP) sp|Q9S850|SUOX_ARATH (e_value=3e-167) Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1;; (*TAIR) AT3G01910.2 (e_value=2e-169) | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr3:314919-316641 REVERSE LENGTH=298;; (*ITAG) Solyc02g094120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49329238-49336140 transcript_region:SL2.40ch02:49329238..49336140- go_terms:GO:0008482 functional_description:"Sulfite oxidase (AHRD V1 **** A5H1Q7_SOLLC); contains Interpro domain(s) IPR000572 Oxidoreductase, molybdopterin binding "; GO:0008482 NbS00049946g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|218855180|gb|ACL12055.1| (e_value=8e-136) Kunitz trypsin inhibitor [Nicotiana tabacum];; (*SWP) sp|P13087|MIRA_RICDU (e_value=2e-58) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=1e-64) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc06g072220.1.1 (e_value=2e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40896228-40896863 transcript_region:SL2.40ch06:40896228..40896863+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz trypsin inhibitor (AHRD V1 **** B8Y888_TOBAC); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00015022g0008.1 protein AED:0.24 eAED:0.24 QI:213|1|1|1|0.83|0.69|13|372|312; (*GB) gi|225429234|ref|XP_002264051.1| (e_value=0.0) PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9LHE5|TO401_ARATH (e_value=2e-172) Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3;; (*TAIR) AT3G20000.1 (e_value=2e-173) | Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309;; (*ITAG) Solyc06g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1692886-1704358 transcript_region:SL2.40ch06:1692886..1704358+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0015450 NbS00003702g0002.1 protein AED:0.45 eAED:0.56 QI:0|0.28|0.5|0.75|1|1|8|272|365; (*ITAG) Solyc02g069760.1.1 (e_value=9e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34159276-34162728 transcript_region:SL2.40ch02:34159276..34162728+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004753g0013.1 protein AED:0.09 eAED:0.09 QI:161|0.62|0.33|1|1|1|9|0|1059; (*GB) gi|224103627|ref|XP_002313128.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R9W1|MARH6_PONAB (e_value=8e-37) E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2 SV=1;; (*TAIR) AT4G34100.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1107;; (*ITAG) Solyc01g107880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00004753g0017.1 protein AED:0.24 eAED:0.24 QI:15|0.88|0.9|1|0.66|0.7|10|649|356; (*GB) gi|296082380|emb|CBI21385.3| (e_value=2e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5D0|CBSX2_ARATH (e_value=1e-89) CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1;; (*TAIR) AT4G34120.1 (e_value=9e-91) | Symbols: LEJ1, CDCP1 | Cystathionine beta-synthase (CBS) family protein | chr4:16341194-16342893 FORWARD LENGTH=238;; (*ITAG) Solyc01g107860.2.1 (e_value=2e-122) genomic_reference:SL2.40ch01 gene_region:87011213-87017801 transcript_region:SL2.40ch01:87011213..87017801- functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00004753g0010.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|3|0|395; (*GB) gi|13492674|gb|AAK28303.1|AF346431_1 (e_value=0.0) phenylpropanoid:glucosyltransferase 1, partial [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=5e-136) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=6e-130) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00004753g0015.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.54|0.90|0.9|0.81|11|601|727; (*GB) gi|7673355|gb|AAF66823.1|AF190655_1 (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=0.0) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc01g107870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87021438-87028206 transcript_region:SL2.40ch01:87021438..87028206+ go_terms:GO:0008143 functional_description:"Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143 NbS00040993g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.66|1|1|3|0|219; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-13) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00040993g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|444; (*GB) gi|347953954|gb|AEP33597.1| (e_value=0.0) CBL-interacting protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9LZW4|CIPKE_ARATH (e_value=2e-172) CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1;; (*TAIR) AT5G01820.1 (e_value=2e-173) | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 | serine/threonine protein kinase 1 | chr5:313423-314751 REVERSE LENGTH=442;; (*ITAG) Solyc09g018280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14009433-14010764 transcript_region:SL2.40ch09:14009433..14010764+ go_terms:GO:0004683 functional_description:"Calcium/calmodulin-dependent protein kinase type 1 (AHRD V1 *-** KCC1A_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00059705g0007.1 protein AED:0.14 eAED:0.14 QI:432|1|1|1|0.84|0.85|14|395|449; (*GB) gi|6328415|dbj|BAA86386.1| (e_value=0.0) transcription factor [Nicotiana tabacum];; (*SWP) sp|Q9FV71|E2FB_ARATH (e_value=3e-145) Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1;; (*TAIR) AT5G22220.2 (e_value=2e-146) | Symbols: E2F1, E2FB, ATE2FB | E2F transcription factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469;; (*ITAG) Solyc11g068800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50504117-50508808 transcript_region:SL2.40ch11:50504117..50508808- go_terms:GO:0005667 functional_description:"Transcription factor (E2F) (AHRD V1 ***- Q9FNS0_CHERU); contains Interpro domain(s) IPR015633 E2F Family "; GO:0005667 NbS00059705g0006.1 protein AED:0.27 eAED:0.27 QI:120|1|1|1|1|1|3|182|192; (*GB) gi|363807412|ref|NP_001242383.1| (e_value=1e-67) uncharacterized protein LOC100820351 [Glycine max];; (*TAIR) AT2G27290.1 (e_value=9e-59) | Symbols: | Protein of unknown function (DUF1279) | chr2:11678586-11679765 REVERSE LENGTH=201;; (*ITAG) Solyc11g068790.1.1 (e_value=2e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50501283-50503285 transcript_region:SL2.40ch11:50501283..50503285+ functional_description:"Chromosome 20 open reading frame 108 ortholog (AHRD V1 *--- A1A4K7_BOVIN); contains Interpro domain(s) IPR009688 Protein of unknown function DUF1279 "; NbS00050216g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|0.25|0.4|5|301|272; (*GB) gi|359496302|ref|XP_003635203.1| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100853295 [Vitis vinifera];; (*ITAG) Solyc08g078310.2.1 (e_value=7e-68) genomic_reference:SL2.40ch08 gene_region:59292037-59293515 transcript_region:SL2.40ch08:59292037..59293515+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00009966g0008.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|0.5|0.33|3|291|104; (*ITAG) Solyc01g098040.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:80409336-80411929 transcript_region:SL2.40ch01:80409336..80411929- functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D5C2M0_NITHN); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00060435g0005.1 protein AED:0.18 eAED:0.19 QI:11|0.25|0|1|0.25|0.2|5|0|320; (*GB) gi|356541032|ref|XP_003538987.1| (e_value=2e-168) PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max];; (*SWP) sp|Q9FN04|AAP4_ARATH (e_value=5e-142) Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1;; (*TAIR) AT5G63850.1 (e_value=4e-143) | Symbols: AAP4 | amino acid permease 4 | chr5:25551494-25553374 FORWARD LENGTH=466;; (*ITAG) Solyc06g060110.2.1 (e_value=2e-135) genomic_reference:SL2.40ch06 gene_region:34421106-34423721 transcript_region:SL2.40ch06:34421106..34423721- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease (AHRD V1 **** B9GU10_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00047241g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|123; (*GB) gi|255566827|ref|XP_002524397.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G49000.1 (e_value=2e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18123559-18124029 REVERSE LENGTH=156;; (*ITAG) Solyc03g119810.1.1 (e_value=1e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62440995-62441450 transcript_region:SL2.40ch03:62440995..62441450+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040314g0003.1 protein AED:0.30 eAED:0.30 QI:300|1|0.9|1|1|1|10|0|536; (*GB) gi|225453032|ref|XP_002266145.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248394 [Vitis vinifera];; (*SWP) sp|Q8GWB7|GUX6_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1;; (*TAIR) AT5G18480.1 (e_value=0.0) | Symbols: PGSIP6 | plant glycogenin-like starch initiation protein 6 | chr5:6131307-6133787 REVERSE LENGTH=537;; (*ITAG) Solyc04g009920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3239955-3246719 transcript_region:SL2.40ch04:3239955..3246719- go_terms:GO:0016758 functional_description:"Glycogenin-like protein (AHRD V1 *-*- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00010157g0101.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|4|0|327 NbS00004273g0006.1 protein AED:0.27 eAED:0.49 QI:0|0|0|1|1|1|2|0|131; (*ITAG) Solyc10g047880.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005741g0006.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|53749448|gb|AAU90304.1| (e_value=8e-17) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc09g059680.1.1 (e_value=4e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00005741g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|0|634; (*GB) gi|18403095|ref|NP_564571.1| (e_value=0.0) Formate--tetrahydrofolate ligase [Arabidopsis thaliana];; (*SWP) sp|Q9SPK5|FTHS_ARATH (e_value=0.0) Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1;; (*TAIR) AT1G50480.1 (e_value=0.0) | Symbols: THFS | 10-formyltetrahydrofolate synthetase | chr1:18702064-18704687 FORWARD LENGTH=634;; (*ITAG) Solyc01g006280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:874303-880944 transcript_region:SL2.40ch01:874303..880944+ go_terms:GO:0009396 functional_description:"Formate-tetrahydrofolate ligase (AHRD V1 ***- D0MR27_PHYIN); contains Interpro domain(s) IPR000559 Formate-tetrahydrofolate ligase, FTHFS "; GO:0009396 NbS00005741g0020.1 protein AED:0.17 eAED:0.17 QI:175|1|1|1|0|0.33|3|435|67; (*GB) gi|224135587|ref|XP_002327255.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6AWV1|POP5_ARATH (e_value=3e-16) Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1;; (*TAIR) AT1G04635.1 (e_value=2e-17) | Symbols: EMB1687 | ribonuclease P family protein / Rpp14 family protein | chr1:1291350-1291805 FORWARD LENGTH=151;; (*ITAG) Solyc01g006260.2.1 (e_value=6e-41) genomic_reference:SL2.40ch01 gene_region:868862-870137 transcript_region:SL2.40ch01:868862..870137+ go_terms:GO:0000171 functional_description:"Ribonuclease P/MRP protein subunit POP5 (AHRD V1 **** POP5_HUMAN); contains Interpro domain(s) IPR002759 Ribonuclease P-related "; GO:0000171 NbS00005741g0017.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|0|0|2|8|81 NbS00005741g0015.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|51091163|dbj|BAD35858.1| (e_value=2e-56) lustrin A-like [Oryza sativa Japonica Group];; (*TAIR) AT5G06700.1 (e_value=2e-55) | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608;; (*ITAG) Solyc01g016380.2.1 (e_value=1e-85) genomic_reference:SL2.40ch01 gene_region:19474845-19476882 transcript_region:SL2.40ch01:19474845..19476882- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00005741g0016.1 protein AED:0.52 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|75; (*ITAG) Solyc04g011660.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4125296-4126710 transcript_region:SL2.40ch04:4125296..4126710+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00054114g0003.1 protein AED:0.56 eAED:0.56 QI:0|0|0.25|0.25|1|1|4|0|67; (*GB) gi|42571571|ref|NP_973876.1| (e_value=5e-26) thioredoxin-like protein [Arabidopsis thaliana];; (*TAIR) AT1G21350.3 (e_value=1e-28) | Symbols: | Thioredoxin superfamily protein | chr1:7477376-7479012 REVERSE LENGTH=252;; (*ITAG) Solyc04g064930.2.1 (e_value=9e-29) genomic_reference:SL2.40ch04 gene_region:55198897-55205258 transcript_region:SL2.40ch04:55198897..55205258+ go_terms:GO:0016491,GO:0045454 functional_description:"Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (AHRD V1 ***- D5BYP3_NITHN); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454 NbS00048438g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|176; (*GB) gi|296278604|gb|ADH04266.1| (e_value=2e-54) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=3e-36) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=2e-37) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090340.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:75789643-75790630 transcript_region:SL2.40ch01:75789643..75790630- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00004206g0005.1 protein AED:0.09 eAED:0.10 QI:0|0.75|0.76|1|0.91|0.84|13|815|1451; (*GB) gi|296087054|emb|CBI33381.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54IP0|DNJC7_DICDI (e_value=6e-28) DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1;; (*TAIR) AT2G41520.1 (e_value=0.0) | Symbols: TPR15 | Heat shock protein DnaJ with tetratricopeptide repeat | chr2:17317662-17322705 FORWARD LENGTH=1108;; (*ITAG) Solyc04g016410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7200714-7218394 transcript_region:SL2.40ch04:7200714..7218394- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00057265g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.6|1|1|1|5|0|563; (*GB) gi|114193|sp|P27608.1|AROF_TOBAC (e_value=0.0) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor;; (*SWP) sp|P27608|AROF_TOBAC (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1;; (*TAIR) AT1G22410.1 (e_value=0.0) | Symbols: | Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527;; (*ITAG) Solyc04g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58061772-58065403 transcript_region:SL2.40ch04:58061772..58065403+ go_terms:GO:0005515,GO:0003849 functional_description:"3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase) (DAHP synthetase class II) (AHRD V1 **** A4YX08_BRASO); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0005515,GO:0003849 NbS00011022g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|373; (*GB) gi|164458462|gb|ABY57638.1| (e_value=7e-38) RAP2.6-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FGF8|ABR1_ARATH (e_value=1e-13) Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1;; (*TAIR) AT5G64750.1 (e_value=8e-15) | Symbols: ABR1 | Integrase-type DNA-binding superfamily protein | chr5:25891679-25893656 FORWARD LENGTH=391;; (*ITAG) Solyc12g056590.1.1 (e_value=7e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47906755-47908290 transcript_region:SL2.40ch12:47906755..47908290+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00050065g0003.1 protein AED:0.07 eAED:0.07 QI:19|1|1|1|0.66|1|4|274|538; (*GB) gi|379054892|gb|AFC88837.1| (e_value=0.0) initiation factor 4A-3-like protein, partial [Miscanthus sinensis];; (*SWP) sp|Q40471|IF4A9_TOBAC (e_value=0.0) Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.4 (e_value=0.0) | Symbols: EIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=407;; (*ITAG) Solyc06g062800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00049816g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|77; (*ITAG) Solyc03g118450.1.1 (e_value=2e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:61377770-61377991 transcript_region:SL2.40ch03:61377770..61377991- functional_description:"Unknown Protein (AHRD V1)"; NbS00049816g0002.1 protein AED:0.05 eAED:0.05 QI:75|1|1|1|0.5|0.6|5|323|133; (*GB) gi|83755093|gb|ABC46407.1| (e_value=7e-56) knotted 1-binding protein 36 [Nicotiana tabacum];; (*TAIR) AT5G03050.1 (e_value=3e-36) | Symbols: | unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:715302-715983 REVERSE LENGTH=140;; (*ITAG) Solyc03g118440.1.1 (e_value=8e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61375887-61376641 transcript_region:SL2.40ch03:61375887..61376641+ functional_description:"Knotted 1-binding protein 36 (AHRD V1 ***- A0S861_TOBAC)"; NbS00002956g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|224142553|ref|XP_002324620.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=9e-16) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=7e-17) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc01g005200.1.1 (e_value=1e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:154250-155140 transcript_region:SL2.40ch01:154250..155140+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M6E6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00002956g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|0.66|0.75|4|0|979; (*GB) gi|359472585|ref|XP_002284972.2| (e_value=0.0) PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Vitis vinifera];; (*SWP) sp|Q94AH8|TPS6_ARATH (e_value=0.0) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6 PE=1 SV=2;; (*TAIR) AT1G68020.2 (e_value=0.0) | Symbols: ATTPS6, TPS6 | UDP-Glycosyltransferase / trehalose-phosphatase family protein | chr1:25497493-25500241 FORWARD LENGTH=860;; (*ITAG) Solyc01g005210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:165134-169351 transcript_region:SL2.40ch01:165134..169351+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00002998g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|236; (*GB) gi|224087379|ref|XP_002308143.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28780.1 (e_value=1e-35) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc09g010570.1.1 (e_value=6e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3937451-3938071 transcript_region:SL2.40ch09:3937451..3938071- functional_description:"Unknown Protein (AHRD V1)"; NbS00002998g0009.1 protein AED:0.07 eAED:0.09 QI:0|0.16|0|1|0.5|0.71|7|0|519; (*GB) gi|225440346|ref|XP_002270206.1| (e_value=4e-106) PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q6NVE8|WDR44_MOUSE (e_value=5e-25) WD repeat-containing protein 44 OS=Mus musculus GN=Wdr44 PE=1 SV=1;; (*TAIR) AT2G37670.1 (e_value=1e-90) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15797384-15800536 REVERSE LENGTH=903;; (*ITAG) Solyc09g010720.2.1 (e_value=1e-158) genomic_reference:SL2.40ch09 gene_region:4029691-4033379 transcript_region:SL2.40ch09:4029691..4033379- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00026087g0011.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0|2|0|101; (*GB) gi|225439922|ref|XP_002275288.1| (e_value=5e-54) PREDICTED: peroxidase 21 [Vitis vinifera];; (*SWP) sp|Q42580|PER21_ARATH (e_value=1e-50) Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1;; (*TAIR) AT2G37130.2 (e_value=4e-52) | Symbols: | Peroxidase superfamily protein | chr2:15598225-15599734 REVERSE LENGTH=296;; (*ITAG) Solyc10g084240.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63188228-63190880 transcript_region:SL2.40ch10:63188228..63190880+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- C1KA92_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00026087g0013.1 protein AED:0.39 eAED:0.53 QI:0|0|0|0.85|0.33|0.28|7|0|585; (*GB) gi|18397514|ref|NP_566278.1| (e_value=5e-63) protein FAR1-related sequence 7 [Arabidopsis thaliana];; (*SWP) sp|Q9M8J3|FRS7_ARATH (e_value=1e-64) Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1;; (*TAIR) AT3G06250.1 (e_value=1e-65) | Symbols: FRS7 | FAR1-related sequence 7 | chr3:1889771-1892065 REVERSE LENGTH=764;; (*ITAG) Solyc10g084220.1.1 (e_value=2e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63177612-63179951 transcript_region:SL2.40ch10:63177612..63179951+ go_terms:GO:0008270,GO:0007165 functional_description:"Protein FAR1-RELATED SEQUENCE 7 (AHRD V1 ***- FRS7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270,GO:0007165 NbS00026087g0010.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|558; (*GB) gi|195536980|dbj|BAG68210.1| (e_value=0.0) lectin receptor kinase-like protein [Nicotiana benthamiana];; (*SWP) sp|Q9LFH9|LRK81_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1;; (*TAIR) AT3G53380.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:19789204-19791351 REVERSE LENGTH=715;; (*ITAG) Solyc10g084250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63196795-63198960 transcript_region:SL2.40ch10:63196795..63198960+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00026087g0012.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|3|0|120; (*GB) gi|255557046|ref|XP_002519556.1| (e_value=3e-28) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc10g084230.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63185291-63186107 transcript_region:SL2.40ch10:63185291..63186107+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029411g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.33|3|0|147; (*GB) gi|338819019|gb|AEJ09955.1| (e_value=2e-40) STP [Medicago truncatula];; (*SWP) sp|Q93WY4|WRK12_ARATH (e_value=9e-17) Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1;; (*TAIR) AT2G44745.1 (e_value=7e-18) | Symbols: | WRKY family transcription factor | chr2:18447482-18449004 REVERSE LENGTH=218;; (*ITAG) Solyc01g089960.2.1 (e_value=5e-37) genomic_reference:SL2.40ch01 gene_region:75418839-75424413 transcript_region:SL2.40ch01:75418839..75424413- go_terms:GO:0045449 functional_description:"WRKY family transcription factor (AHRD V1 *-*- D7LBR5_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00024925g0015.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|0|0.66|3|0|88; (*GB) gi|225444031|ref|XP_002281811.1| (e_value=4e-35) PREDICTED: UPF0459 protein CG10681 [Vitis vinifera];; (*TAIR) AT3G29130.1 (e_value=1e-31) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371); Has 135 Blast hits to 135 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:11102546-11103294 REVERSE LENGTH=119;; (*ITAG) Solyc02g069820.2.1 (e_value=2e-49) genomic_reference:SL2.40ch02 gene_region:34229131-34232684 transcript_region:SL2.40ch02:34229131..34232684- functional_description:"UPF0459 protein C19orf50 homolog (AHRD V1 ***- CS050_DANRE); contains Interpro domain(s) IPR019371 Domain of unknown function KxDL "; NbS00024925g0014.1 protein AED:0.31 eAED:0.39 QI:71|1|0.75|1|0.66|0.75|4|0|174; (*GB) gi|225444037|ref|XP_002282043.1| (e_value=2e-66) PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=4e-48) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1;; (*TAIR) AT1G30500.2 (e_value=3e-49) | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804736-10805896 REVERSE LENGTH=190;; (*ITAG) Solyc02g069860.2.1 (e_value=3e-88) genomic_reference:SL2.40ch02 gene_region:34253995-34260017 transcript_region:SL2.40ch02:34253995..34260017- go_terms:GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-7 (AHRD V1 ***- B6TY54_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0016566 NbS00024925g0009.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|155; (*GB) gi|255564359|ref|XP_002523176.1| (e_value=3e-61) Rhicadhesin receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q6K5P8|GL23_ORYSJ (e_value=1e-53) Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1;; (*TAIR) AT5G39190.2 (e_value=4e-49) | Symbols: GLP2A, ATGER2, GER2 | germin-like protein 2 | chr5:15692771-15693546 REVERSE LENGTH=200;; (*ITAG) Solyc10g078840.1.1 (e_value=1e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00024925g0017.1 protein AED:0.12 eAED:0.23 QI:58|0|0.33|1|0|0.66|3|0|143; (*GB) gi|313586591|gb|ADR71306.1| (e_value=2e-74) 50S ribosomal protein L20 [Hevea brasiliensis];; (*SWP) sp|B6IPJ8|RL20_RHOCS (e_value=2e-39) 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1;; (*TAIR) AT1G16740.1 (e_value=9e-69) | Symbols: | Ribosomal protein L20 | chr1:5727773-5728950 FORWARD LENGTH=126;; (*ITAG) Solyc02g069840.2.1 (e_value=2e-83) genomic_reference:SL2.40ch02 gene_region:34246378-34250461 transcript_region:SL2.40ch02:34246378..34250461+ go_terms:GO:0003735 functional_description:"50S ribosomal protein L20 (AHRD V1 ***- B9GNB5_POPTR); contains Interpro domain(s) IPR005812 Ribosomal protein L20, bacterial-type "; GO:0003735 NbS00024925g0012.1 protein AED:0.25 eAED:0.25 QI:61|1|1|1|1|1|4|314|107; (*GB) gi|350535172|ref|NP_001234180.1| (e_value=2e-46) 40S ribosomal protein S25 [Solanum lycopersicum];; (*SWP) sp|P46301|RS25_SOLLC (e_value=4e-48) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1;; (*TAIR) AT4G34555.1 (e_value=5e-43) | Symbols: | Ribosomal protein S25 family protein | chr4:16504381-16505339 REVERSE LENGTH=108;; (*ITAG) Solyc10g052660.1.1 (e_value=3e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48687984-48689698 transcript_region:SL2.40ch10:48687984..48689698- go_terms:GO:0003735 functional_description:"40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE); contains Interpro domain(s) IPR004977 Ribosomal protein S25 "; GO:0003735 NbS00031664g0009.1 protein AED:0.12 eAED:0.14 QI:183|0.6|0.66|1|0.2|0.33|6|1028|562; (*GB) gi|225438934|ref|XP_002279390.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261169 [Vitis vinifera];; (*TAIR) AT4G37480.1 (e_value=0.0) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17619261-17621596 FORWARD LENGTH=531;; (*ITAG) Solyc02g064740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30419778-30424818 transcript_region:SL2.40ch02:30419778..30424818+ go_terms:GO:0031072 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- D6TMN3_9CHLR); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00031664g0008.1 protein AED:0.21 eAED:0.21 QI:181|1|1|1|1|1|8|133|292; (*GB) gi|40809925|dbj|BAD07294.1| (e_value=0.0) prolyl 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=1e-21) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT4G33910.1 (e_value=9e-137) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:16256943-16258614 REVERSE LENGTH=288;; (*ITAG) Solyc02g064750.2.1 (e_value=2e-171) genomic_reference:SL2.40ch02 gene_region:30427051-30432713 transcript_region:SL2.40ch02:30427051..30432713+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00032989g0003.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|97 NbS00032989g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.94|0.94|1|0.88|0.94|19|249|665; (*GB) gi|225446513|ref|XP_002278771.1| (e_value=0.0) PREDICTED: GTP-binding protein TypA/BipA homolog isoform 1 [Vitis vinifera];; (*SWP) sp|O25225|TYPA_HELPY (e_value=2e-176) GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=typA PE=3 SV=1;; (*TAIR) AT2G31060.2 (e_value=0.0) | Symbols: | elongation factor family protein | chr2:13213496-13218544 REVERSE LENGTH=667;; (*ITAG) Solyc07g053470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59231070-59250411 transcript_region:SL2.40ch07:59231070..59250411+ go_terms:GO:0005515,GO:0003746 functional_description:"GTP binding/translation elongation factor protein (AHRD V1 **** C1E924_9CHLO); contains Interpro domain(s) IPR006298 GTP-binding protein TypA "; GO:0005515,GO:0003746 NbS00024593g0005.1 protein AED:0.28 eAED:0.29 QI:0|0.76|0.71|1|0.61|0.64|14|453|567; (*GB) gi|225462023|ref|XP_002268040.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263435 [Vitis vinifera];; (*SWP) sp|P45816|SEC14_YARLI (e_value=5e-40) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT1G55690.2 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:20808622-20811831 REVERSE LENGTH=625;; (*ITAG) Solyc07g066090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64839709-64844491 transcript_region:SL2.40ch07:64839709..64844491+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7KN07_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00010734g0005.1 protein AED:0.34 eAED:0.51 QI:0|0.33|0|0.75|0.33|0.25|4|0|221; (*GB) gi|225449082|ref|XP_002274556.1| (e_value=2e-55) PREDICTED: uncharacterized protein sll0005 [Vitis vinifera];; (*TAIR) AT2G39190.2 (e_value=1e-53) | Symbols: ATATH8 | Protein kinase superfamily protein | chr2:16350140-16355745 FORWARD LENGTH=814;; (*ITAG) Solyc04g049380.2.1 (e_value=3e-112) genomic_reference:SL2.40ch04 gene_region:40914182-40935245 transcript_region:SL2.40ch04:40914182..40935245+ go_terms:GO:0005215 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00008821g0005.1 protein AED:0.41 eAED:0.51 QI:0|0.25|0.4|1|0.25|0.2|5|39|129 NbC25572522g0003.1 protein AED:0.10 eAED:0.10 QI:1|1|0.66|1|1|1|3|0|272; (*GB) gi|255560741|ref|XP_002521384.1| (e_value=2e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G72670.1 (e_value=4e-44) | Symbols: iqd8 | IQ-domain 8 | chr1:27356898-27358657 REVERSE LENGTH=414;; (*ITAG) Solyc03g121760.2.1 (e_value=1e-144) genomic_reference:SL2.40ch03 gene_region:63883128-63885625 transcript_region:SL2.40ch03:63883128..63885625- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00053688g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.33|1|0.4|1|6|394|424; (*GB) gi|357449611|ref|XP_003595082.1| (e_value=2e-179) hypothetical protein MTR_2g038080 [Medicago truncatula];; (*SWP) sp|Q9LU72|PPA28_ARATH (e_value=7e-157) Probable inactive purple acid phosphatase 28 OS=Arabidopsis thaliana GN=PAP28 PE=2 SV=1;; (*TAIR) AT5G57140.1 (e_value=5e-158) | Symbols: ATPAP28, PAP28 | purple acid phosphatase 28 | chr5:23149926-23151370 FORWARD LENGTH=397;; (*ITAG) Solyc07g009460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4557747-4564247 transcript_region:SL2.40ch07:4557747..4564247+ go_terms:GO:0004722,GO:0003993 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- D1JJW8_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 "; GO:0004722,GO:0003993 NbS00000302g0007.1 protein AED:0.63 eAED:0.86 QI:0|0.5|0|1|1|1|3|0|185; (*GB) gi|225432997|ref|XP_002280814.1| (e_value=3e-60) PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Vitis vinifera];; (*SWP) sp|Q9FIY7|SM3L3_ARATH (e_value=8e-61) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1;; (*TAIR) AT5G43530.1 (e_value=6e-62) | Symbols: | Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277;; (*ITAG) Solyc03g005460.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:349801-357078 transcript_region:SL2.40ch03:349801..357078- go_terms:GO:0004842 functional_description:"DNA helicase (AHRD V1 **-- C4R4A1_PICPG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004842 NbS00007119g0011.1 protein AED:0.46 eAED:0.58 QI:0|0|0|1|0.5|0.66|3|0|102; (*GB) gi|224131502|ref|XP_002321100.1| (e_value=9e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g097930.2.1 (e_value=7e-18) genomic_reference:SL2.40ch09 gene_region:67180180-67182477 transcript_region:SL2.40ch09:67180180..67182477- go_terms:GO:0000287,GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- B1J275_PSEPW); contains Interpro domain(s) IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core "; GO:0000287,GO:0047429 NbS00007119g0010.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|4|0|330; (*GB) gi|297842169|ref|XP_002888966.1| (e_value=3e-61) hypothetical protein ARALYDRAFT_476555 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P46290|RL31_NICGU (e_value=8e-30) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT1G74120.1 (e_value=9e-63) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:27871923-27873260 REVERSE LENGTH=445;; (*ITAG) Solyc09g097920.1.1 (e_value=2e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00007119g0009.1 protein AED:0.44 eAED:0.57 QI:0|0|0|1|0|0|2|0|107; (*ITAG) Solyc09g097920.1.1 (e_value=7e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00006904g0001.1 protein AED:0.05 eAED:0.07 QI:0|0.66|0.25|0.75|1|1|4|0|424; (*GB) gi|86450874|gb|ABC96720.1| (e_value=3e-96) plastid fibrillin 2 [Coffea canephora];; (*SWP) sp|Q9ZP40|PG1_PEA (e_value=8e-95) Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1;; (*TAIR) AT2G35490.1 (e_value=2e-95) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g005220.2.1 (e_value=1e-170) genomic_reference:SL2.40ch08 gene_region:141108-143480 transcript_region:SL2.40ch08:141108..143480- go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00006904g0007.1 protein AED:0.15 eAED:0.15 QI:128|1|1|1|1|1|2|354|80; (*GB) gi|357516973|ref|XP_003628775.1| (e_value=2e-40) Dolichol phosphate-mannose biosynthesis regulatory protein [Medicago truncatula];; (*SWP) sp|Q2KIN1|DPM2_BOVIN (e_value=6e-22) Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3;; (*TAIR) AT1G74340.1 (e_value=9e-39) | Symbols: | dolichol phosphate-mannose biosynthesis regulatory protein-related | chr1:27948288-27948654 REVERSE LENGTH=80;; (*ITAG) Solyc08g005210.2.1 (e_value=1e-44) genomic_reference:SL2.40ch08 gene_region:139878-140641 transcript_region:SL2.40ch08:139878..140641+ go_terms:GO:0005515,GO:0004582 functional_description:"Dolichol phosphate-mannose biosynthesis regulatory protein (AHRD V1 **** C0H8B0_SALSA); contains Interpro domain(s) IPR009914 Dolichol phosphate-mannose biosynthesis regulatory "; GO:0005515,GO:0004582 NbS00032703g0001.1 protein AED:0.18 eAED:0.18 QI:62|0|0.5|1|0|0.5|2|275|98; (*ITAG) Solyc09g090770.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65547813-65548013 transcript_region:SL2.40ch09:65547813..65548013+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018007g0014.1 protein AED:0.27 eAED:0.30 QI:0|0|0|0.5|1|1|4|0|176; (*ITAG) Solyc09g090530.2.1 (e_value=6e-25) genomic_reference:SL2.40ch09 gene_region:65377168-65379292 transcript_region:SL2.40ch09:65377168..65379292+ functional_description:"At1g04030 (Fragment) (AHRD V1 *-*- Q1W7K0_9SOLA)"; NbS00018007g0010.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|0|0.5|2|16|89; (*ITAG) Solyc09g090540.2.1 (e_value=8e-22) genomic_reference:SL2.40ch09 gene_region:65379328-65382647 transcript_region:SL2.40ch09:65379328..65382647- functional_description:"Unknown Protein (AHRD V1)"; NbS00018007g0012.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.16|0.2|0.33|6|0|217 NbS00018007g0003.1 protein AED:0.82 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|187 NbS00031707g0005.1 protein AED:0.16 eAED:0.47 QI:0|0|0|1|0|0|5|0|241 NbS00031707g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|57013996|ref|YP_173467.1| (e_value=1e-23) hypothetical protein NitaMp130 [Nicotiana tabacum]; NbS00017649g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.25|1|0.66|0.75|4|0|214; (*GB) gi|356567338|ref|XP_003551878.1| (e_value=6e-66) PREDICTED: mitotic spindle checkpoint protein MAD2-like [Glycine max];; (*SWP) sp|Q9LU93|MAD2_ARATH (e_value=2e-65) Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana GN=MAD2 PE=2 SV=1;; (*TAIR) AT3G25980.1 (e_value=2e-66) | Symbols: MAD2 | DNA-binding HORMA family protein | chr3:9503232-9504402 FORWARD LENGTH=209;; (*ITAG) Solyc05g014370.2.1 (e_value=9e-70) genomic_reference:SL2.40ch05 gene_region:8214092-8215990 transcript_region:SL2.40ch05:8214092..8215990- go_terms:GO:0010997,GO:0042803 functional_description:"Mitotic spindle checkpoint protein MAD2 (AHRD V1 ***- B6UEH3_MAIZE); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0010997,GO:0042803 NbS00017649g0008.1 protein AED:0.09 eAED:0.10 QI:178|0.7|0.63|1|0.7|0.54|11|364|1413; (*GB) gi|225425888|ref|XP_002266601.1| (e_value=0.0) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=0.0) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.2 (e_value=0.0) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1489;; (*ITAG) Solyc05g014380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8239463-8243866 transcript_region:SL2.40ch05:8239463..8243866+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 ***- B9HTC0_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00040865g0006.1 protein AED:0.18 eAED:0.18 QI:84|0.85|0.62|0.87|1|0.87|8|0|601; (*GB) gi|729623|sp|Q03685.1|BIP5_TOBAC (e_value=0.0) RecName: Full=Luminal-binding protein 5; Short=BiP 5; AltName: Full=78 kDa glucose-regulated protein homolog 5; Short=GRP-78-5; Flags: Precursor;; (*SWP) sp|Q03685|BIP5_TOBAC (e_value=0.0) Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc03g082920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46341372-46345339 transcript_region:SL2.40ch03:46341372..46345339- go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00040865g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|6|477|342; (*GB) gi|302143930|emb|CBI23035.3| (e_value=1e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SM23|ACBP1_ARATH (e_value=7e-144) Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2;; (*TAIR) AT5G53470.1 (e_value=5e-145) | Symbols: ACBP1, ACBP | acyl-CoA binding protein 1 | chr5:21710497-21712391 FORWARD LENGTH=338;; (*ITAG) Solyc03g082910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46336367-46340909 transcript_region:SL2.40ch03:46336367..46340909+ go_terms:GO:0000062,GO:0032791 functional_description:"Acyl-CoA-binding domain-containing protein 6 (AHRD V1 **-* B6T724_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0000062,GO:0032791 NbS00023275g0009.1 protein AED:0.11 eAED:0.11 QI:76|1|1|1|1|1|2|130|381; (*GB) gi|297733630|emb|CBI14877.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STM6|GDL57_ARATH (e_value=7e-155) GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana GN=At3g48460 PE=2 SV=1;; (*TAIR) AT3G48460.1 (e_value=5e-156) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:17949496-17951082 FORWARD LENGTH=381;; (*ITAG) Solyc03g111550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56202459-56204866 transcript_region:SL2.40ch03:56202459..56204866- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At3g48460 (AHRD V1 ***- GDL57_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00023275g0010.1 protein AED:0.11 eAED:0.12 QI:0|0.57|0.37|1|0.71|0.75|8|0|545; (*GB) gi|255555021|ref|XP_002518548.1| (e_value=1e-158) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=3e-121) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=2e-121) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc03g111540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56198434-56201296 transcript_region:SL2.40ch03:56198434..56201296- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00058559g0005.1 protein AED:0.18 eAED:0.18 QI:161|0.9|0.90|1|0.7|0.81|11|524|479; (*GB) gi|296088556|emb|CBI37547.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-77) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G64600.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:25825178-25827931 FORWARD LENGTH=522;; (*ITAG) Solyc11g005870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:691719-702561 transcript_region:SL2.40ch11:691719..702561- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00004626g0010.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=4e-25) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*TAIR) AT5G53750.1 (e_value=3e-11) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc02g078480.2.1 (e_value=8e-38) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00004626g0017.1 protein AED:0.19 eAED:0.46 QI:0|0|0|1|0|0|3|0|115; (*GB) gi|21633600|gb|AAM55641.1| (e_value=5e-36) PsbE [Merremia hastata];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=2e-37) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=1e-38) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00059821g0004.1 protein AED:0.14 eAED:0.14 QI:148|0.94|0.94|1|0.77|0.78|19|276|607; (*GB) gi|359490935|ref|XP_002274270.2| (e_value=0.0) PREDICTED: histone deacetylase 15-like [Vitis vinifera];; (*SWP) sp|Q8GXJ1|HDA15_ARATH (e_value=0.0) Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2;; (*TAIR) AT3G18520.1 (e_value=0.0) | Symbols: HDA15, ATHDA15 | histone deacetylase 15 | chr3:6361605-6365367 FORWARD LENGTH=552;; (*ITAG) Solyc03g119730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62336578-62345117 transcript_region:SL2.40ch03:62336578..62345117+ go_terms:GO:0031078 functional_description:"Histone deacetylase 6 (AHRD V1 *-** B1AUA6_MOUSE); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0031078 NbS00052701g0001.1 protein AED:0.31 eAED:0.31 QI:70|1|0.66|1|0|0|3|0|81 NbS00020143g0010.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|6|262|642; (*GB) gi|225449483|ref|XP_002278500.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera];; (*TAIR) AT3G48670.2 (e_value=0.0) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647;; (*ITAG) Solyc06g051810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31973284-31982663 transcript_region:SL2.40ch06:31973284..31982663- functional_description:"X1 (Fragment) (AHRD V1 **-- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00020143g0013.1 protein AED:0.07 eAED:0.11 QI:0|0.33|0|1|0.33|0.25|4|0|287; (*GB) gi|40217878|gb|AAR82850.1| (e_value=1e-147) expansin-2 [Petunia x hybrida];; (*SWP) sp|O48818|EXPA4_ARATH (e_value=8e-131) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=6e-132) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g051800.2.1 (e_value=3e-149) genomic_reference:SL2.40ch06 gene_region:31967807-31969622 transcript_region:SL2.40ch06:31967807..31969622- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- O04359_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00052725g0002.1 protein AED:0.12 eAED:0.18 QI:184|0.66|0.75|1|0|0|4|404|216; (*GB) gi|225448408|ref|XP_002273406.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100257064 isoform 1 [Vitis vinifera];; (*TAIR) AT2G40095.1 (e_value=2e-53) | Symbols: | Alpha/beta hydrolase related protein | chr2:16743107-16744455 FORWARD LENGTH=209;; (*ITAG) Solyc05g052750.2.1 (e_value=7e-69) genomic_reference:SL2.40ch05 gene_region:62084392-62086301 transcript_region:SL2.40ch05:62084392..62086301- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KX74_ARALY)"; NbS00027265g0004.1 protein AED:0.11 eAED:0.11 QI:676|0.85|0.87|1|0.57|0.37|8|302|927; (*GB) gi|357933577|dbj|BAL15055.1| (e_value=0.0) glutamate receptor 3.2 [Solanum lycopersicum];; (*SWP) sp|Q8GXJ4|GLR34_ARATH (e_value=0.0) Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2;; (*TAIR) AT1G05200.2 (e_value=0.0) | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor 3.4 | chr1:1505642-1509002 FORWARD LENGTH=959;; (*ITAG) Solyc05g045650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56534856-56539727 transcript_region:SL2.40ch05:56534856..56539727+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9IAE8_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00061821g0008.1 protein AED:0.09 eAED:0.09 QI:152|0.66|0.75|1|1|1|4|0|437; (*GB) gi|255551442|ref|XP_002516767.1| (e_value=0.0) Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis];; (*SWP) sp|O33341|Y2859_MYCTU (e_value=9e-15) Putative glutamine amidotransferase Rv2859c OS=Mycobacterium tuberculosis GN=Rv2859c PE=1 SV=1;; (*TAIR) AT5G38200.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc02g086300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43573059-43575024 transcript_region:SL2.40ch02:43573059..43575024- go_terms:GO:0006541 functional_description:"Glutamine amidotransferase (AHRD V1 *-*- C6YZA6_9BACE); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00061821g0007.1 protein AED:0.21 eAED:0.21 QI:325|0.88|1|1|0.77|0.7|10|338|424; (*GB) gi|225447975|ref|XP_002269064.1| (e_value=2e-157) PREDICTED: kinetochore protein Nuf2 [Vitis vinifera];; (*TAIR) AT1G61000.1 (e_value=4e-110) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitosis; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Kinetochore protein Nuf2 (InterPro:IPR005549); Has 50972 Blast hits to 29793 proteins in 2070 species: Archae - 902; Bacteria - 7404; Metazoa - 23628; Fungi - 4156; Plants - 2312; Viruses - 158; Other Eukaryotes - 12412 (source: NCBI BLink). | chr1:22471096-22474046 REVERSE LENGTH=440;; (*ITAG) Solyc10g019040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:11226981-11232451 transcript_region:SL2.40ch10:11226981..11232451+ go_terms:GO:0000775 functional_description:"Kinetochore protein NUF2-like protein (AHRD V1 ***- D0N421_PHYIN); contains Interpro domain(s) IPR005549 Kinetochore protein Nuf2 "; GO:0000775 NbS00022280g0107.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|465 NbS00011767g0003.1 protein AED:0.18 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|389986107|gb|AFL46171.1| (e_value=3e-19) jasmonate ZIM domain protein f [Nicotiana attenuata];; (*ITAG) Solyc08g036620.2.1 (e_value=2e-20) genomic_reference:SL2.40ch08 gene_region:26072986-26073577 transcript_region:SL2.40ch08:26072986..26073577- go_terms:GO:0005515 functional_description:"Protein TIFY 5A (AHRD V1 ***- TIF5A_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00006307g0001.1 protein AED:0.05 eAED:0.05 QI:485|0.83|0.85|1|0.83|0.71|7|262|587; (*GB) gi|224140589|ref|XP_002323664.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SCU5|WNK5_ARATH (e_value=0.0) Probable serine/threonine-protein kinase WNK5 OS=Arabidopsis thaliana GN=WNK5 PE=1 SV=2;; (*TAIR) AT3G51630.2 (e_value=0.0) | Symbols: WNK5 | with no lysine (K) kinase 5 | chr3:19149487-19151924 FORWARD LENGTH=549;; (*ITAG) Solyc09g018170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:13402635-13407530 transcript_region:SL2.40ch09:13402635..13407530+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00006307g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|359481242|ref|XP_002266872.2| (e_value=4e-17) PREDICTED: uncharacterized protein LOC100241389 [Vitis vinifera];; (*TAIR) AT2G38500.1 (e_value=2e-16) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:16117610-16119041 REVERSE LENGTH=356; NbS00029328g0017.1 protein AED:0.69 eAED:0.72 QI:0|0.25|0|0.6|1|1|5|0|120; (*GB) gi|255564184|ref|XP_002523089.1| (e_value=8e-21) protein translocase, putative [Ricinus communis];; (*SWP) sp|Q9LZH8|OP164_ARATH (e_value=8e-21) Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1;; (*TAIR) AT3G62880.2 (e_value=6e-22) | Symbols: ATOEP16-4 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:23245103-23246002 REVERSE LENGTH=136;; (*ITAG) Solyc06g084550.2.1 (e_value=2e-43) genomic_reference:SL2.40ch06 gene_region:45923087-45926101 transcript_region:SL2.40ch06:45923087..45926101- go_terms:GO:0015450 functional_description:"Atoep16-4 (AHRD V1 ***- D7LTA7_ARALY); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00029328g0002.1 protein AED:0.10 eAED:0.10 QI:250|1|1|1|0.66|0.57|7|323|446; (*GB) gi|48093465|gb|AAT40109.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 3 [Nicotiana tabacum];; (*SWP) sp|Q91XL3|UXS1_MOUSE (e_value=5e-144) UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1;; (*TAIR) AT3G62830.2 (e_value=0.0) | Symbols: UXS2, ATUXS2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:23232539-23235353 FORWARD LENGTH=445;; (*ITAG) Solyc12g099480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64957950-64961604 transcript_region:SL2.40ch12:64957950..64961604+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_PHOLL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00029328g0018.1 protein AED:0.28 eAED:0.28 QI:833|1|0.83|1|0.4|0|6|0|172; (*GB) gi|147791053|emb|CAN68023.1| (e_value=3e-75) hypothetical protein VITISV_003624 [Vitis vinifera];; (*SWP) sp|A0QSH4|Y1480_MYCS2 (e_value=4e-14) Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_1480 PE=3 SV=1;; (*TAIR) AT4G02405.2 (e_value=5e-62) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:1058118-1059671 REVERSE LENGTH=317;; (*ITAG) Solyc06g084570.2.1 (e_value=2e-104) genomic_reference:SL2.40ch06 gene_region:45932130-45940454 transcript_region:SL2.40ch06:45932130..45940454+ functional_description:"Methyltransferase (AHRD V1 *-*- D5P6G9_9MYCO)"; NbS00030826g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.6|0.66|6|289|283; (*GB) gi|255573421|ref|XP_002527636.1| (e_value=3e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G32400.3 (e_value=8e-97) | Symbols: TOM2A | tobamovirus multiplication 2A | chr1:11689393-11690873 REVERSE LENGTH=280;; (*ITAG) Solyc08g077220.2.1 (e_value=4e-150) genomic_reference:SL2.40ch08 gene_region:58295865-58302381 transcript_region:SL2.40ch08:58295865..58302381- go_terms:GO:0005515 functional_description:"Tetraspanin family protein (AHRD V1 **-- B6TTZ1_MAIZE); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0005515 NbS00031401g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.42|0.85|0.66|0.57|7|0|316; (*GB) gi|255540297|ref|XP_002511213.1| (e_value=0.0) nucleolar protein nop56, putative [Ricinus communis];; (*SWP) sp|O00567|NOP56_HUMAN (e_value=2e-145) Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4;; (*TAIR) AT3G12860.1 (e_value=0.0) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:4091678-4093921 FORWARD LENGTH=499;; (*ITAG) Solyc01g100570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbS00001299g0007.1 protein AED:0.09 eAED:0.10 QI:37|1|0|1|1|0.5|2|0|765; (*GB) gi|73745650|gb|AAZ81985.1| (e_value=0.0) ethylene receptor [Petunia x hybrida];; (*SWP) sp|Q0WPQ2|ETR2_ARATH (e_value=0.0) Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2;; (*TAIR) AT3G23150.1 (e_value=0.0) | Symbols: ETR2 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:8255156-8257560 FORWARD LENGTH=773;; (*ITAG) Solyc06g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33043757-33047094 transcript_region:SL2.40ch06:33043757..33047094- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** Q9XET8_SOLLC); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0004872,GO:0051740,GO:0004696 NbS00019758g0008.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|0|401; (*GB) gi|365222886|gb|AEW69795.1| (e_value=0.0) Hop-interacting protein THI032 [Solanum lycopersicum];; (*SWP) sp|Q56YA5|SGAT_ARATH (e_value=0.0) Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2;; (*TAIR) AT2G13360.2 (e_value=0.0) | Symbols: AGT, AGT1, SGAT | alanine:glyoxylate aminotransferase | chr2:5539417-5540902 REVERSE LENGTH=401;; (*ITAG) Solyc12g099930.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65224451-65227305 transcript_region:SL2.40ch12:65224451..65227305+ go_terms:GO:0008152,GO:0030170 functional_description:"Serine-glyoxylate aminotransferase (AHRD V1 ***- Q3S2I1_SPIPO); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00019758g0005.1 protein AED:0.14 eAED:0.14 QI:1461|0.8|0.66|1|0.8|0.83|6|172|436; (*GB) gi|302141756|emb|CBI18959.3| (e_value=2e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21560.3 (e_value=5e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). | chr1:7555208-7556789 FORWARD LENGTH=399;; (*ITAG) Solyc12g099920.1.1 (e_value=5e-141) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:65216365-65220969 transcript_region:SL2.40ch12:65216365..65220969+ go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1)"; GO:0006355 NbS00027417g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.94|1|20|355|780; (*GB) gi|359480159|ref|XP_002276396.2| (e_value=0.0) PREDICTED: protein fat-free homolog [Vitis vinifera];; (*SWP) sp|Q54KG3|FFR_DICDI (e_value=3e-51) Protein fat-free homolog OS=Dictyostelium discoideum GN=ffr PE=3 SV=1;; (*TAIR) AT4G02030.1 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780;; (*ITAG) Solyc06g009650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3588734-3602911 transcript_region:SL2.40ch06:3588734..3602911+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0042802 NbS00001900g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.75|1|1|4|0|334; (*GB) gi|18000042|gb|AAL54878.1|AF004232_1 (e_value=2e-50) hydroxy-methyl-glutaryl-coenzyme A reductase [Nicotiana tabacum];; (*SWP) sp|Q01559|HMDH_NICSY (e_value=1e-51) 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris GN=HMGR PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=1e-34) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g082260.2.1 (e_value=5e-42) genomic_reference:SL2.40ch02 gene_region:40528275-40531424 transcript_region:SL2.40ch02:40528275..40531424- go_terms:GO:0042282 functional_description:"Hydroxy-methylglutaryl-coenzyme A reductase (AHRD V1 **** O48624_TOBAC); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00025336g0001.1 protein AED:0.39 eAED:0.39 QI:509|0.66|0.75|1|0.33|0.5|4|261|101 NbS00024397g0006.1 protein AED:0.08 eAED:0.08 QI:44|1|1|1|0.77|0.9|10|143|481; (*GB) gi|296080910|emb|CBI18754.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04084|SCP31_ARATH (e_value=0.0) Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=2;; (*TAIR) AT1G11080.1 (e_value=0.0) | Symbols: scpl31 | serine carboxypeptidase-like 31 | chr1:3694917-3697759 REVERSE LENGTH=492;; (*ITAG) Solyc02g078690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37934055-37938656 transcript_region:SL2.40ch02:37934055..37938656- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00030546g0115.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|160 NbS00030546g0117.1 protein AED:0.16 eAED:0.16 QI:58|1|1|1|0.5|0.33|3|338|272 NbS00030546g0118.1 protein AED:0.26 eAED:0.32 QI:0|0|0.33|1|0|0|3|0|96 NbS00030546g0116.1 protein AED:0.18 eAED:0.18 QI:233|1|1|1|1|1|6|571|669 NbS00005321g0005.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-26) hypothetical protein [Nicotiana tabacum]; NbS00012938g0003.1 protein AED:0.09 eAED:0.14 QI:0|1|0.5|1|0|0.5|2|1165|859; (*GB) gi|297795935|ref|XP_002865852.1| (e_value=0.0) hypothetical protein ARALYDRAFT_495202 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8NIW7|BBP_NEUCR (e_value=3e-66) Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bpb-1 PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=0.0) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00012938g0001.1 protein AED:0.25 eAED:0.25 QI:173|0.71|0.75|1|1|1|8|143|342; (*GB) gi|147798034|emb|CAN67263.1| (e_value=3e-74) hypothetical protein VITISV_022611 [Vitis vinifera];; (*TAIR) AT5G09380.1 (e_value=2e-42) | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272;; (*ITAG) Solyc05g051620.2.1 (e_value=3e-146) genomic_reference:SL2.40ch05 gene_region:61139484-61144048 transcript_region:SL2.40ch05:61139484..61144048+ go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 *-*- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 "; GO:0005666 NbS00023738g0004.1 protein AED:0.21 eAED:0.21 QI:82|0.85|0.75|1|1|1|8|0|483; (*GB) gi|255547962|ref|XP_002515038.1| (e_value=0.0) chaperonin containing t-complex protein 1, epsilon subunit, tcpe, putative [Ricinus communis];; (*SWP) sp|O04450|TCPE_ARATH (e_value=0.0) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8688101 REVERSE LENGTH=535;; (*ITAG) Solyc05g013990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00057730g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|173; (*GB) gi|225451423|ref|XP_002268728.1| (e_value=7e-48) PREDICTED: uncharacterized protein LOC100241260 [Vitis vinifera];; (*TAIR) AT3G27160.1 (e_value=6e-39) | Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183;; (*ITAG) Solyc02g068090.2.1 (e_value=1e-65) genomic_reference:SL2.40ch02 gene_region:32718467-32721668 transcript_region:SL2.40ch02:32718467..32721668- go_terms:GO:0005840 functional_description:"30S ribosomal protein S21, chloroplastic (Fragment) (AHRD V1 *--- RR21_SPIOL); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00017395g0107.1 protein AED:0.26 eAED:0.29 QI:205|0.7|0.63|1|0.6|0.54|11|414|328 NbS00022507g0009.1 protein AED:0.17 eAED:0.18 QI:3|0|0.33|1|0.5|0.33|3|216|161; (*ITAG) Solyc05g055270.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64127466-64128071 transcript_region:SL2.40ch05:64127466..64128071+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 ***- Q84ZT8_TOBAC)"; NbS00022507g0008.1 protein AED:0.00 eAED:0.00 QI:134|1|0.5|1|0|0|2|0|238; (*GB) gi|255565639|ref|XP_002523809.1| (e_value=4e-67) Ferredoxin-3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9ZQG8|FER3_ARATH (e_value=9e-59) Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1;; (*TAIR) AT2G27510.1 (e_value=7e-60) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g006910.1.1 (e_value=5e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1431026-1431403 transcript_region:SL2.40ch11:1431026..1431403- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00022507g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|282; (*GB) gi|225464142|ref|XP_002265566.1| (e_value=5e-78) PREDICTED: protein YIPF5 [Vitis vinifera];; (*SWP) sp|Q54QY3|YIPF5_DICDI (e_value=2e-18) Protein YIPF5 homolog OS=Dictyostelium discoideum GN=yipf5 PE=3 SV=1;; (*TAIR) AT2G36300.1 (e_value=1e-59) | Symbols: | Integral membrane Yip1 family protein | chr2:15213362-15214129 REVERSE LENGTH=255;; (*ITAG) Solyc05g055300.1.1 (e_value=5e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64139793-64140548 transcript_region:SL2.40ch05:64139793..64140548- go_terms:GO:0017137 functional_description:"YIPF5 (AHRD V1 **-- C0H9W5_SALSA); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00037621g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|4|0|267; (*GB) gi|297739784|emb|CBI29966.3| (e_value=4e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G11964.1 (e_value=9e-49) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=3e-94) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00037621g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.80|0.78|0.97|0.77|0.86|37|282|1682; (*GB) gi|297739784|emb|CBI29966.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q14690|RRP5_HUMAN (e_value=7e-88) Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3;; (*TAIR) AT3G11964.1 (e_value=0.0) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00021918g0004.1 protein AED:0.00 eAED:0.00 QI:24|1|1|1|0|0.5|2|947|55 NbS00021918g0003.1 protein AED:0.34 eAED:0.71 QI:0|0.33|0|0.75|1|1|4|0|185; (*GB) gi|225463846|ref|XP_002265371.1| (e_value=2e-16) PREDICTED: acyl-CoA synthetase family member 4 [Vitis vinifera];; (*SWP) sp|F4K1G2|AEE19_ARATH (e_value=3e-14) Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana GN=At5g35930 PE=2 SV=1;; (*TAIR) AT5G35930.1 (e_value=2e-15) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE LENGTH=1040;; (*ITAG) Solyc01g081050.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:72868817-72892330 transcript_region:SL2.40ch01:72868817..72892330+ go_terms:GO:0008152 functional_description:"D-alanine--poly(phosphoribitol) ligase subunit 1 (AHRD V1 *--- DLTA_BACSU); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00051560g0014.1 protein AED:0.24 eAED:0.24 QI:227|0.85|0.75|1|0.71|0.62|8|0|658; (*GB) gi|21105732|gb|AAM34765.1|AF509865_1 (e_value=0.0) nam-like protein 2 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-72) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G09330.4 (e_value=5e-80) | Symbols: VNI1 | NAC domain containing protein 82 | chr5:2892623-2894708 REVERSE LENGTH=489;; (*ITAG) Solyc11g005920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:743287-748004 transcript_region:SL2.40ch11:743287..748004+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HEK0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00051560g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|238 NbS00051560g0008.1 protein AED:0.41 eAED:0.41 QI:33|-1|0|1|-1|1|1|0|205 NbS00051560g0002.1 protein AED:0.41 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|230 NbS00051560g0011.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|1|1|2|0|129 NbS00039846g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|621; (*GB) gi|359491256|ref|XP_003634250.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1 [Vitis vinifera];; (*SWP) sp|Q9FHK7|Y5516_ARATH (e_value=1e-95) Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1;; (*TAIR) AT5G05160.1 (e_value=9e-97) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:1528000-1530017 FORWARD LENGTH=640;; (*ITAG) Solyc03g114080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58180200-58182571 transcript_region:SL2.40ch03:58180200..58182571+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00039846g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|359488718|ref|XP_003633804.1| (e_value=2e-32) PREDICTED: RING-H2 finger protein ATL46-like [Vitis vinifera];; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=6e-30) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=4e-31) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc03g114090.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58185475-58186413 transcript_region:SL2.40ch03:58185475..58186413+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00043187g0007.1 protein AED:0.14 eAED:0.15 QI:54|0.8|0.54|1|0.9|0.81|11|0|586; (*GB) gi|225428981|ref|XP_002264769.1| (e_value=0.0) PREDICTED: vacuolar-sorting receptor 3-like [Vitis vinifera];; (*SWP) sp|O80977|VSR3_ARATH (e_value=0.0) Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1;; (*TAIR) AT2G14740.2 (e_value=0.0) | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculolar sorting receptor 3 | chr2:6308895-6312303 FORWARD LENGTH=628;; (*ITAG) Solyc01g107130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86507024-86513290 transcript_region:SL2.40ch01:86507024..86513290+ go_terms:GO:0005509 functional_description:"Vacuolar sorting receptor (AHRD V1 ***- Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005509 NbS00043187g0003.1 protein AED:0.10 eAED:0.11 QI:0|0.75|0.4|1|1|1|5|0|357; (*GB) gi|224103739|ref|XP_002313175.1| (e_value=4e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XHI9|BH084_ARATH (e_value=2e-47) Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1;; (*TAIR) AT2G14760.1 (e_value=1e-48) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328;; (*ITAG) Solyc01g107140.1.1 (e_value=5e-122) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:86513848-86515217 transcript_region:SL2.40ch01:86513848..86515217- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B4FMK3_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00006424g0008.1 protein AED:0.30 eAED:0.30 QI:201|0.6|0.72|1|0.2|0.18|11|0|635; (*GB) gi|224081537|ref|XP_002306450.1| (e_value=5e-97) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50430.1 (e_value=5e-78) | Symbols: | unknown protein; Has 54 Blast hits to 54 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 29; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18713718-18716759 FORWARD LENGTH=642;; (*ITAG) Solyc02g090260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46441840-46446509 transcript_region:SL2.40ch02:46441840..46446509+ functional_description:"cDNA clone J20 full insert sequence (AHRD V1 ***- B7ESH6_ORYSJ)"; NbS00006424g0001.1 protein AED:0.36 eAED:0.36 QI:606|0.75|0.6|1|0.5|0.4|5|0|173; (*GB) gi|269838629|gb|ACZ48680.1| (e_value=1e-50) geraniol 10-hydroxylase [Swertia mussotii];; (*SWP) sp|O23976|C76B1_HELTU (e_value=4e-39) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=2e-26) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g090300.2.1 (e_value=6e-72) genomic_reference:SL2.40ch02 gene_region:46462377-46464211 transcript_region:SL2.40ch02:46462377..46464211+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032010g0001.1 protein AED:0.22 eAED:0.22 QI:140|1|1|1|0.42|0.62|8|355|362; (*GB) gi|357453179|ref|XP_003596866.1| (e_value=5e-127) mRNA-decapping enzyme-like protein [Medicago truncatula];; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=1e-89) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2;; (*TAIR) AT1G08370.1 (e_value=9e-91) | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367;; (*ITAG) Solyc09g010300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3673362-3681783 transcript_region:SL2.40ch09:3673362..3681783- go_terms:GO:0050072,GO:0042803 functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; GO:0050072,GO:0042803 NbS00032010g0009.1 protein AED:0.54 eAED:0.90 QI:0|0.12|0.11|0.66|0.25|0.33|9|10|913; (*GB) gi|359495426|ref|XP_002270830.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251856 [Vitis vinifera];; (*TAIR) AT1G74350.1 (e_value=0.0) | Symbols: | Intron maturase, type II family protein | chr1:27949022-27951283 REVERSE LENGTH=753;; (*ITAG) Solyc03g033520.2.1 (e_value=7e-24) genomic_reference:SL2.40ch03 gene_region:9344333-9346934 transcript_region:SL2.40ch03:9344333..9346934+ functional_description:"Maturase (Fragment) (AHRD V1 *-*- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00008275g0001.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|875; (*GB) gi|297740842|emb|CBI31024.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SA72|Y1357_ARATH (e_value=0.0) Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1;; (*TAIR) AT1G30570.1 (e_value=0.0) | Symbols: HERK2 | hercules receptor kinase 2 | chr1:10828933-10831482 FORWARD LENGTH=849;; (*ITAG) Solyc02g069970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34336372-34340608 transcript_region:SL2.40ch02:34336372..34340608+ go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00008275g0008.1 protein AED:0.00 eAED:0.00 QI:225|1|0.85|1|0.66|0.57|7|1149|477; (*GB) gi|356517838|ref|XP_003527593.1| (e_value=6e-79) PREDICTED: uncharacterized protein LOC100800660 [Glycine max];; (*TAIR) AT2G19260.1 (e_value=1e-35) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:8357331-8359931 FORWARD LENGTH=631;; (*ITAG) Solyc02g069980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34340546-34350241 transcript_region:SL2.40ch02:34340546..34350241- go_terms:GO:0008270 functional_description:"PHD and RING finger domain-containing protein 1 (AHRD V1 *--- PHRF1_HUMAN); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00042642g0013.1 protein AED:0.24 eAED:0.24 QI:602|1|1|1|1|1|2|41|101 NbS00042642g0004.1 protein AED:0.34 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|242035753|ref|XP_002465271.1| (e_value=2e-67) hypothetical protein SORBIDRAFT_01g035310 [Sorghum bicolor];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=1e-24) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT2G40830.3 (e_value=2e-56) | Symbols: RHC1A | RING-H2 finger C1A | chr2:17043642-17044628 FORWARD LENGTH=328;; (*ITAG) Solyc01g009000.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:3012133-3013463 transcript_region:SL2.40ch01:3012133..3013463+ go_terms:GO:0005515 functional_description:"RING finger protein 6 (AHRD V1 *--- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00042642g0016.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.33|0.5|0.66|3|0|175; (*GB) gi|359485176|ref|XP_002280075.2| (e_value=2e-23) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|Q9LVP0|Y5639_ARATH (e_value=3e-14) Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1;; (*TAIR) AT3G11080.1 (e_value=2e-17) | Symbols: AtRLP35, RLP35 | receptor like protein 35 | chr3:3470481-3473312 FORWARD LENGTH=943;; (*ITAG) Solyc02g072400.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00042642g0017.1 protein AED:0.28 eAED:0.33 QI:0|0|0|0.66|0|0|3|0|312; (*GB) gi|359485449|ref|XP_002276919.2| (e_value=2e-42) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|Q9SD62|Y3471_ARATH (e_value=2e-21) Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1;; (*TAIR) AT1G33590.1 (e_value=7e-26) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:12177788-12179221 FORWARD LENGTH=477;; (*ITAG) Solyc02g072400.1.1 (e_value=7e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00046045g0003.1 protein AED:0.06 eAED:0.06 QI:76|1|1|1|0.37|0.55|9|531|334; (*GB) gi|225442535|ref|XP_002284154.1| (e_value=3e-151) PREDICTED: uncharacterized protein LOC100256719 [Vitis vinifera];; (*TAIR) AT1G52155.1 (e_value=2e-151) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:19417666-19419591 FORWARD LENGTH=319;; (*ITAG) Solyc03g120830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63134865-63137953 transcript_region:SL2.40ch03:63134865..63137953- functional_description:"F5F19.22 protein (Fragment) (AHRD V1 ***- Q9ZU10_ARATH)"; NbS00025570g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0.33|0.66|0|0.66|3|0|253; (*GB) gi|225426921|ref|XP_002264729.1| (e_value=6e-65) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=3e-44) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=1e-49) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc08g007450.1.1 (e_value=7e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2025883-2026491 transcript_region:SL2.40ch08:2025883..2026491- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00020727g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.4|1|1|1|5|0|494; (*GB) gi|111054505|gb|ABH04326.1| (e_value=0.0) NPR1 [Nicotiana tabacum];; (*SWP) sp|P93002|NPR1_ARATH (e_value=8e-133) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1;; (*TAIR) AT1G64280.1 (e_value=6e-134) | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory protein (NPR1) | chr1:23853329-23855407 REVERSE LENGTH=593;; (*ITAG) Solyc07g040690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00029456g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|359478349|ref|XP_003632111.1| (e_value=4e-111) PREDICTED: 60S ribosomal protein L12-like [Vitis vinifera];; (*SWP) sp|O50003|RL12_PRUAR (e_value=4e-108) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=1e-105) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=4e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00029456g0006.1 protein AED:0.22 eAED:0.22 QI:128|0.66|0.5|1|1|1|4|245|312; (*GB) gi|78191436|gb|ABB29939.1| (e_value=7e-178) major intrinsic protein 2-like [Solanum tuberosum];; (*SWP) sp|Q9ATM6|PIP24_MAIZE (e_value=7e-159) Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1;; (*TAIR) AT2G37170.1 (e_value=4e-158) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc11g069430.1.1 (e_value=2e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51094793-51097463 transcript_region:SL2.40ch11:51094793..51097463- go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- Q9M4T0_ALLCE); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00034634g0003.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.75|1|1|4|0|422; (*GB) gi|224142359|ref|XP_002324526.1| (e_value=1e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=5e-90) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.2 (e_value=1e-101) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=776;; (*ITAG) Solyc12g009960.1.1 (e_value=7e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00034634g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|163; (*GB) gi|357480009|ref|XP_003610290.1| (e_value=8e-45) Eukaryotic initiation factor iso-4F subunit p82-34 [Medicago truncatula];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=1e-30) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT4G30680.1 (e_value=7e-42) | Symbols: | Initiation factor eIF-4 gamma, MA3 | chr4:14958687-14960012 REVERSE LENGTH=263;; (*ITAG) Solyc12g009960.1.1 (e_value=2e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00041802g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|0|0|2|0|87; (*GB) gi|261876231|emb|CAZ15549.1| (e_value=2e-22) phloem protein 2 [Malus x domestica];; (*SWP) sp|Q9SA16|P2A09_ARATH (e_value=9e-20) Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana GN=PP2A9 PE=2 SV=1;; (*TAIR) AT1G31200.1 (e_value=7e-21) | Symbols: ATPP2-A9, PP2-A9 | phloem protein 2-A9 | chr1:11146923-11147678 REVERSE LENGTH=180;; (*ITAG) Solyc00g048510.2.1 (e_value=1e-44) genomic_reference:SL2.40ch00 gene_region:13569740-13570564 transcript_region:SL2.40ch00:13569740..13570564+ go_terms:GO:0030246 functional_description:"Phloem lectin (AHRD V1 ***- Q8LK67_9ROSI)"; GO:0030246 NbS00041802g0007.1 protein AED:0.19 eAED:0.19 QI:141|1|0.66|1|1|1|3|0|262; (*GB) gi|297737969|emb|CBI27170.3| (e_value=4e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81865|P2A01_ARATH (e_value=2e-60) Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1;; (*TAIR) AT4G19840.1 (e_value=2e-61) | Symbols: ATPP2-A1, ATPP2A-1, PP2-A1 | phloem protein 2-A1 | chr4:10774336-10775701 FORWARD LENGTH=246;; (*ITAG) Solyc02g069020.2.1 (e_value=6e-173) genomic_reference:SL2.40ch02 gene_region:33549370-33551904 transcript_region:SL2.40ch02:33549370..33551904- go_terms:GO:0030246 functional_description:"Phloem protein 2 (AHRD V1 **-- D0R6I5_MALDO)"; GO:0030246 NbS00041802g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.9|0.81|11|419|368; (*GB) gi|224115534|ref|XP_002332158.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94F00|IMPL1_ARATH (e_value=0.0) Phosphatase IMPL1, chloroplastic OS=Arabidopsis thaliana GN=IMPL1 PE=1 SV=2;; (*TAIR) AT1G31190.1 (e_value=0.0) | Symbols: IMPL1 | myo-inositol monophosphatase like 1 | chr1:11144861-11146800 FORWARD LENGTH=371;; (*ITAG) Solyc02g069010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33538178-33545772 transcript_region:SL2.40ch02:33538178..33545772+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7KK98_ARALY); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008934 NbS00006296g0010.1 protein AED:0.30 eAED:0.30 QI:0|0|0.33|1|0|0|3|269|433; (*GB) gi|225456505|ref|XP_002280974.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Vitis vinifera];; (*SWP) sp|Q9FI49|PP428_ARATH (e_value=9e-142) Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2;; (*TAIR) AT5G50990.1 (e_value=7e-143) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:20739453-20741281 FORWARD LENGTH=534;; (*ITAG) Solyc06g068810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39027366-39029601 transcript_region:SL2.40ch06:39027366..39029601- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006296g0009.1 protein AED:0.21 eAED:0.21 QI:153|1|1|1|1|1|6|242|281; (*GB) gi|317106613|dbj|BAJ53120.1| (e_value=1e-105) JHL07K02.10 [Jatropha curcas];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=5e-16) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G01630.1 (e_value=4e-99) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc06g068800.2.1 (e_value=4e-154) genomic_reference:SL2.40ch06 gene_region:39024155-39026253 transcript_region:SL2.40ch06:39024155..39026253+ go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00006296g0008.1 protein AED:0.25 eAED:0.25 QI:30|0.5|0.33|1|1|1|3|328|103; (*GB) gi|224136344|ref|XP_002322306.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C1W5|TIM16_SCHPO (e_value=4e-14) Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=2 SV=1;; (*TAIR) AT5G61880.2 (e_value=2e-48) | Symbols: | Protein Transporter, Pam16 | chr5:24850598-24851512 FORWARD LENGTH=113;; (*ITAG) Solyc06g068820.2.1 (e_value=6e-66) genomic_reference:SL2.40ch06 gene_region:39033285-39037520 transcript_region:SL2.40ch06:39033285..39037520+ go_terms:GO:0019904,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit TIM16 (AHRD V1 ***- B6UGA4_MAIZE); contains Interpro domain(s) IPR005341 Protein Transporter, Pam16 "; GO:0019904,GO:0015450 NbS00000220g0008.1 protein AED:0.06 eAED:0.06 QI:491|1|1|1|0.66|0.75|4|290|328; (*GB) gi|225462070|ref|XP_002276318.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g55760 [Vitis vinifera];; (*SWP) sp|Q680K8|Y1576_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1;; (*TAIR) AT1G55760.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr1:20847117-20848507 REVERSE LENGTH=329;; (*ITAG) Solyc07g065930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64741683-64744223 transcript_region:SL2.40ch07:64741683..64744223+ go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7KN20_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00000220g0009.1 protein AED:0.39 eAED:0.43 QI:21|0.12|0.33|1|0.75|0.88|9|94|341; (*ITAG) Solyc10g005900.2.1 (e_value=4e-17) genomic_reference:SL2.40ch10 gene_region:693359-702377 transcript_region:SL2.40ch10:693359..702377+ functional_description:"General transcription factor IIH subunit 1 (AHRD V1 ***- TF2H1_DICDI); contains Interpro domain(s) IPR013089 Kelch related "; NbS00004409g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|137; (*GB) gi|10945615|gb|AAG24616.1|AF298594_1 (e_value=2e-16) arabinogalactan protein [Nicotiana alata];; (*ITAG) Solyc02g092790.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:48339964-48342204 transcript_region:SL2.40ch02:48339964..48342204+ functional_description:"Arabinogalactan (AHRD V1 *-*- Q43719_SOLLC)"; NbS00004409g0016.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|291; (*GB) gi|255541746|ref|XP_002511937.1| (e_value=2e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G46220.1 (e_value=2e-94) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr2:18979655-18980557 FORWARD LENGTH=241;; (*ITAG) Solyc01g095270.2.1 (e_value=3e-169) genomic_reference:SL2.40ch01 gene_region:78352723-78355979 transcript_region:SL2.40ch01:78352723..78355979+ functional_description:"SOUL heme-binding protein-like (AHRD V1 *-*- D7G9H5_ECTSI); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00004409g0015.1 protein AED:0.27 eAED:0.32 QI:321|0.87|0.77|1|0.75|0.66|9|0|409; (*GB) gi|225454381|ref|XP_002279076.1| (e_value=3e-122) PREDICTED: uncharacterized protein LOC100258473 [Vitis vinifera];; (*TAIR) AT2G46200.2 (e_value=1e-97) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:18974864-18976646 REVERSE LENGTH=382;; (*ITAG) Solyc01g095230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78332859-78338053 transcript_region:SL2.40ch01:78332859..78338053- functional_description:"Programmed cell death 7 (AHRD V1 *-*- Q567N3_DANRE)"; NbS00004409g0018.1 protein AED:0.03 eAED:0.07 QI:0|0|0|1|0|0|2|0|287; (*GB) gi|255545120|ref|XP_002513621.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g095240.2.1 (e_value=6e-92) genomic_reference:SL2.40ch01 gene_region:78344509-78345600 transcript_region:SL2.40ch01:78344509..78345600- functional_description:"Unknown Protein (AHRD V1)"; NbS00017861g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|319; (*GB) gi|225454236|ref|XP_002274751.1| (e_value=2e-167) PREDICTED: gibberellin 20 oxidase 1-B [Vitis vinifera];; (*SWP) sp|Q9C971|G3OX4_ARATH (e_value=6e-40) Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1;; (*TAIR) AT4G23340.1 (e_value=2e-140) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12195719-12196793 REVERSE LENGTH=324;; (*ITAG) Solyc03g025490.2.1 (e_value=5e-146) genomic_reference:SL2.40ch03 gene_region:7271287-7272707 transcript_region:SL2.40ch03:7271287..7272707+ go_terms:GO:0045544 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 **** Q9FGV8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00038557g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|224064161|ref|XP_002301395.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46300.1 (e_value=2e-28) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:19008392-19009247 FORWARD LENGTH=252;; (*ITAG) Solyc10g011750.2.1 (e_value=5e-66) genomic_reference:SL2.40ch10 gene_region:3990598-3992416 transcript_region:SL2.40ch10:3990598..3992416- functional_description:"NDR1/HIN1-Like protein 2 (AHRD V1 **-- B6TX37_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00038557g0010.1 protein AED:0.18 eAED:0.22 QI:5|0|0.5|1|0|0.5|2|0|203; (*GB) gi|224127854|ref|XP_002320180.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g050240.2.1 (e_value=1e-41) genomic_reference:SL2.40ch05 gene_region:59430798-59431765 transcript_region:SL2.40ch05:59430798..59431765+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038557g0009.1 protein AED:0.50 eAED:0.50 QI:0|0.75|0.8|0.8|0.75|1|5|413|267; (*GB) gi|356532139|ref|XP_003534631.1| (e_value=4e-107) PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=9e-108) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=7e-109) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc05g050230.2.1 (e_value=3e-110) genomic_reference:SL2.40ch05 gene_region:59425821-59429488 transcript_region:SL2.40ch05:59425821..59429488+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00038557g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|74; (*GB) gi|224130486|ref|XP_002320849.1| (e_value=3e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55570.1 (e_value=5e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20610166-20610671 REVERSE LENGTH=109;; (*ITAG) Solyc05g050250.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59432993-59433286 transcript_region:SL2.40ch05:59432993..59433286- functional_description:"Unknown Protein (AHRD V1)"; NbS00007235g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|224079181|ref|XP_002305784.1| (e_value=1e-29) f-box family protein [Populus trichocarpa];; (*SWP) sp|O24463|PBF_MAIZE (e_value=4e-24) Dof zinc finger protein PBF OS=Zea mays GN=PBF PE=1 SV=1;; (*TAIR) AT5G60200.1 (e_value=3e-25) | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:24241078-24241951 FORWARD LENGTH=257;; (*ITAG) Solyc02g077960.1.1 (e_value=2e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37365478-37366377 transcript_region:SL2.40ch02:37365478..37366377- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 12 (AHRD V1 *-*- A5HWG1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00018504g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.28|0.85|0.66|0.57|7|0|326; (*GB) gi|359486424|ref|XP_002268768.2| (e_value=6e-136) PREDICTED: syntaxin-31-like [Vitis vinifera];; (*SWP) sp|Q9FFK1|SYP31_ARATH (e_value=4e-119) Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1;; (*TAIR) AT5G05760.1 (e_value=3e-120) | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin of plants 31 | chr5:1729111-1730903 REVERSE LENGTH=336;; (*ITAG) Solyc07g054140.2.1 (e_value=5e-172) genomic_reference:SL2.40ch07 gene_region:59835012-59838461 transcript_region:SL2.40ch07:59835012..59838461+ go_terms:GO:0005484 functional_description:"Syntaxin 32 (AHRD V1 ***- B6TET0_MAIZE); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00018504g0008.1 protein AED:0.22 eAED:0.38 QI:0|0.33|0|0.85|1|1|7|0|298; (*GB) gi|78191424|gb|ABB29933.1| (e_value=5e-117) P0 ribosomal protein-like [Solanum tuberosum];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=2e-112) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G11250.1 (e_value=1e-110) | Symbols: | Ribosomal protein L10 family protein | chr3:3521453-3522826 FORWARD LENGTH=323;; (*ITAG) Solyc05g054580.2.1 (e_value=8e-120) genomic_reference:SL2.40ch05 gene_region:63611603-63614235 transcript_region:SL2.40ch05:63611603..63614235- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7L9V8_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00043559g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|1|0.66|0.75|4|0|298; (*GB) gi|91107165|gb|ABE11608.1| (e_value=0.0) xyloglucan endo-transglycosylase precursor [Solanum chacoense];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=1e-157) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G14130.1 (e_value=1e-152) | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase 15 | chr4:8137161-8138196 REVERSE LENGTH=289;; (*ITAG) Solyc09g092520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66925770-66927844 transcript_region:SL2.40ch09:66925770..66927844- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 8 (AHRD V1 **** C0IRG7_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00001820g0004.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|0.66|0.75|4|246|163 NbS00059391g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|224091885|ref|XP_002309385.1| (e_value=4e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0C2|EGC1_ARATH (e_value=4e-41) Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana GN=EGC1 PE=2 SV=1;; (*TAIR) AT4G30380.1 (e_value=3e-42) | Symbols: | Barwin-related endoglucanase | chr4:14860486-14860994 FORWARD LENGTH=123;; (*ITAG) Solyc07g006390.1.1 (e_value=6e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1211878-1212553 transcript_region:SL2.40ch07:1211878..1212553- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN16_9ROSI); contains Interpro domain(s) IPR005132 Rare lipoprotein A "; NbS00013061g0005.1 protein AED:0.34 eAED:0.34 QI:166|0.9|0.90|1|0.6|0.63|11|336|527; (*GB) gi|359485403|ref|XP_002274885.2| (e_value=2e-88) PREDICTED: putative E3 ubiquitin-protein ligase RING1a-like [Vitis vinifera];; (*SWP) sp|Q9FKW0|RNG1A_ARATH (e_value=1e-59) Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2;; (*TAIR) AT5G44280.1 (e_value=1e-60) | Symbols: ATRING1A, RING1A | RING 1A | chr5:17836115-17839114 REVERSE LENGTH=522;; (*ITAG) Solyc07g053800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59538571-59545480 transcript_region:SL2.40ch07:59538571..59545480- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- B0WQV3_CULQU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013061g0101.1 protein AED:0.07 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|290|177 NbS00016471g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|110; (*GB) gi|76161008|gb|ABA40467.1| (e_value=2e-61) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=3e-58) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1;; (*TAIR) AT2G20450.1 (e_value=2e-59) | Symbols: | Ribosomal protein L14 | chr2:8813923-8815071 FORWARD LENGTH=134;; (*ITAG) Solyc06g008260.2.1 (e_value=7e-65) genomic_reference:SL2.40ch06 gene_region:2134911-2138172 transcript_region:SL2.40ch06:2134911..2138172+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00016868g0012.1 protein AED:0.31 eAED:0.37 QI:192|0|0.25|1|0.66|0.5|4|0|366; (*GB) gi|356546120|ref|XP_003541479.1| (e_value=1e-22) PREDICTED: putative RING-H2 finger protein ATL53-like [Glycine max];; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=4e-16) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT1G72220.1 (e_value=3e-17) | Symbols: | RING/U-box superfamily protein | chr1:27184388-27185629 REVERSE LENGTH=413;; (*ITAG) Solyc01g105620.2.1 (e_value=3e-51) genomic_reference:SL2.40ch01 gene_region:85491114-85492725 transcript_region:SL2.40ch01:85491114..85492725+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016868g0019.1 protein AED:0.02 eAED:0.02 QI:187|1|1|1|0.75|0.6|5|184|216; (*GB) gi|255563194|ref|XP_002522600.1| (e_value=2e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G14095.1 (e_value=8e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 106 Blast hits to 103 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 4; Plants - 87; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:5932506-5933752 REVERSE LENGTH=234;; (*ITAG) Solyc01g105600.2.1 (e_value=2e-69) genomic_reference:SL2.40ch01 gene_region:85485997-85487705 transcript_region:SL2.40ch01:85485997..85487705- functional_description:"Unknown Protein (AHRD V1)"; NbS00016868g0020.1 protein AED:0.26 eAED:0.26 QI:176|0.66|0.71|1|0.83|0.85|7|0|520; (*GB) gi|298561264|dbj|BAJ09646.1| (e_value=0.0) GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Nicotiana benthamiana];; (*SWP) sp|P47924|RIBBA_ARATH (e_value=0.0) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G64300.1 (e_value=0.0) | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydrolase II | chr5:25718459-25720790 FORWARD LENGTH=543;; (*ITAG) Solyc01g105560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85458577-85463185 transcript_region:SL2.40ch01:85458577..85463185+ go_terms:GO:0009231 functional_description:"3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 ***- D7CLR6_SYNLT); contains Interpro domain(s) IPR000422 DHBP synthase RibB "; GO:0009231 NbS00016868g0013.1 protein AED:0.30 eAED:0.33 QI:0|0.66|0.75|1|0.66|0.75|4|583|98 NbS00039984g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.33|0.66|1|1|3|10|74 NbS00039984g0008.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.66|0|0.33|3|0|128 NbS00039984g0005.1 protein AED:0.14 eAED:0.27 QI:61|0|0|1|0|0|4|0|256; (*GB) gi|310813973|gb|ADP30798.1| (e_value=2e-125) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-67) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-68) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00039984g0007.1 protein AED:0.18 eAED:0.26 QI:0|0|0|1|0|0|3|0|208; (*GB) gi|310813973|gb|ADP30798.1| (e_value=4e-97) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-45) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-46) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=5e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00039984g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|3|0|81; (*GB) gi|310813973|gb|ADP30798.1| (e_value=1e-31) nicotine uptake permease 1 [Nicotiana tabacum];; (*ITAG) Solyc12g087880.1.1 (e_value=9e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61816214-61817684 transcript_region:SL2.40ch12:61816214..61817684+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00004360g0004.1 protein AED:0.22 eAED:0.61 QI:38|0.5|0.33|1|0|0|3|0|106; (*ITAG) Solyc07g045000.2.1 (e_value=9e-15) genomic_reference:SL2.40ch07 gene_region:55381574-55386469 transcript_region:SL2.40ch07:55381574..55386469- functional_description:"Unknown Protein (AHRD V1)"; NbS00004360g0005.1 protein AED:0.16 eAED:0.16 QI:434|1|1|1|0.55|0.6|10|404|267; (*GB) gi|359484042|ref|XP_002263050.2| (e_value=1e-134) PREDICTED: transmembrane protein 56-like [Vitis vinifera];; (*SWP) sp|Q8CGF5|TMM56_MOUSE (e_value=2e-26) Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1;; (*TAIR) AT4G19645.2 (e_value=4e-123) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr4:10689941-10691298 REVERSE LENGTH=268;; (*ITAG) Solyc07g044990.2.1 (e_value=4e-165) genomic_reference:SL2.40ch07 gene_region:55376713-55380562 transcript_region:SL2.40ch07:55376713..55380562+ go_terms:GO:0016021 functional_description:"Transmembrane protein 56 (AHRD V1 ***- B6TI82_MAIZE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00005469g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|514; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=9e-173) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=5e-102) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=4e-161) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc02g092840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48393830-48395374 transcript_region:SL2.40ch02:48393830..48395374+ go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RHX9_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00005469g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.77|0.7|1|1|1|10|104|972; (*GB) gi|297738380|emb|CBI27581.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G01810.3 (e_value=2e-145) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921;; (*ITAG) Solyc02g092870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48405997-48410328 transcript_region:SL2.40ch02:48405997..48410328- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00014291g0005.1 protein AED:0.10 eAED:0.10 QI:286|0.85|0.87|1|0.57|0.62|8|1110|752; (*GB) gi|4768916|gb|AAD29679.1|AF133209_1 (e_value=0.0) CLC-Nt2 protein [Nicotiana tabacum];; (*SWP) sp|P92942|CLCB_ARATH (e_value=0.0) Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1;; (*TAIR) AT3G27170.1 (e_value=0.0) | Symbols: CLC-B, ATCLC-B | chloride channel B | chr3:10024147-10026921 FORWARD LENGTH=780;; (*ITAG) Solyc02g068080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32703505-32707626 transcript_region:SL2.40ch02:32703505..32707626- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00004002g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|242; (*GB) gi|225441133|ref|XP_002265852.1| (e_value=3e-89) PREDICTED: thaumatin-like protein 1 [Vitis vinifera];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=1e-83) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G36010.2 (e_value=6e-76) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:17039472-17040976 REVERSE LENGTH=301;; (*ITAG) Solyc07g017970.1.1 (e_value=9e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:8697170-8699576 transcript_region:SL2.40ch07:8697170..8699576- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- C1K3P2_PYRPY); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00026445g0005.1 protein AED:0.63 eAED:0.82 QI:0|0|0|0.4|0.5|0.8|5|0|183; (*GB) gi|297830342|ref|XP_002883053.1| (e_value=6e-84) hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=6e-84) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.2 (e_value=4e-85) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1015;; (*ITAG) Solyc01g057900.2.1 (e_value=1e-104) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00034633g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|1|1|7|542|215; (*GB) gi|134684|sp|P10792.1|SODCP_PETHY (e_value=2e-94) RecName: Full=Superoxide dismutase [Cu-Zn], chloroplastic; Flags: Precursor;; (*SWP) sp|P10792|SODCP_PETHY (e_value=5e-96) Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1;; (*TAIR) AT2G28190.1 (e_value=3e-86) | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216;; (*ITAG) Solyc11g066390.1.1 (e_value=6e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49246132-49251451 transcript_region:SL2.40ch11:49246132..49251451+ go_terms:GO:0055114 functional_description:"Superoxide dismutase (AHRD V1 ***- Q7XAV2_SOLLC); contains Interpro domain(s) IPR018152 Superoxide dismutase, copper/zinc, binding site "; GO:0055114 NbS00034633g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|20546|emb|CAA43111.1| (e_value=3e-71) DNA-binding protein [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=2e-45) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT2G28200.1 (e_value=2e-46) | Symbols: | C2H2-type zinc finger family protein | chr2:12024321-12025181 FORWARD LENGTH=286;; (*ITAG) Solyc11g066400.1.1 (e_value=5e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49266712-49267596 transcript_region:SL2.40ch11:49266712..49267596+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00035863g0005.1 protein AED:0.37 eAED:0.37 QI:39|0.42|0.25|0.62|0.71|0.75|8|0|266; (*GB) gi|75288399|sp|Q5YLB4.1|GYRB_NICBE (e_value=1e-160) RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB4|GYRB_NICBE (e_value=4e-162) DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1;; (*TAIR) AT5G04130.2 (e_value=4e-137) | Symbols: | DNA GYRASE B2 | chr5:1123729-1128031 REVERSE LENGTH=519;; (*ITAG) Solyc12g021230.1.1 (e_value=2e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14910466-14933796 transcript_region:SL2.40ch12:14910466..14933796+ go_terms:GO:0006265,GO:0005524,GO:0005694 functional_description:"DNA gyrase subunit B (AHRD V1 ***- Q8YLN3_ANASP); contains Interpro domain(s) IPR011557 DNA gyrase, subunit B "; GO:0006265,GO:0005524,GO:0005694 NbS00019054g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.33|1|0.6|0.83|6|0|328; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=2e-180) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT5G66460.1 (e_value=2e-102) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc00g231680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00019278g0002.1 protein AED:0.34 eAED:0.37 QI:0|1|0|1|1|1|2|0|183; (*GB) gi|7542598|gb|AAF63515.1|AF242731_1 (e_value=1e-86) TMV-induced protein I [Capsicum annuum];; (*TAIR) AT4G39730.1 (e_value=1e-58) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096550.2.1 (e_value=5e-95) genomic_reference:SL2.40ch03 gene_region:52149761-52150922 transcript_region:SL2.40ch03:52149761..52150922+ functional_description:"Wound/stress protein (AHRD V1 **-- Q672Q3_SOLLC); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00019278g0001.1 protein AED:0.03 eAED:0.03 QI:280|0|0.5|1|0|0.5|2|195|179; (*GB) gi|10241929|dbj|BAB13708.1| (e_value=3e-113) elicitor inducible protein [Nicotiana tabacum];; (*TAIR) AT4G39730.1 (e_value=5e-54) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096540.2.1 (e_value=5e-93) genomic_reference:SL2.40ch03 gene_region:52147104-52148707 transcript_region:SL2.40ch03:52147104..52148707- functional_description:"Wound/stress protein (AHRD V1 **-- Q672Q3_SOLLC); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00034065g0010.1 protein AED:0.21 eAED:0.21 QI:134|0|0.25|0.75|0.33|0.25|4|0|348; (*GB) gi|225459164|ref|XP_002283946.1| (e_value=8e-115) PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like [Vitis vinifera];; (*SWP) sp|Q3E911|PP400_ARATH (e_value=3e-94) Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1;; (*TAIR) AT5G27460.1 (e_value=2e-95) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9693262-9694815 REVERSE LENGTH=491;; (*ITAG) Solyc01g081320.2.1 (e_value=3e-171) genomic_reference:SL2.40ch01 gene_region:73054879-73057079 transcript_region:SL2.40ch01:73054879..73057079- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M643_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00034065g0011.1 protein AED:0.26 eAED:0.30 QI:347|0.75|0.69|1|0.66|0.76|13|1|324; (*GB) gi|37983622|gb|AAR06292.1| (e_value=0.0) SAICAR synthetase [Nicotiana tabacum];; (*SWP) sp|P38025|PUR7_ARATH (e_value=7e-166) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2;; (*TAIR) AT3G21110.2 (e_value=6e-167) | Symbols: PUR7, PURC | purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411;; (*ITAG) Solyc01g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase "; GO:0004639 NbS00034065g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0.33|1|0.5|0.33|3|202|194; (*GB) gi|350538459|ref|NP_001234088.1| (e_value=1e-111) uncharacterized protein LOC543815 [Solanum lycopersicum];; (*SWP) sp|Q9ZW24|GSTU7_ARATH (e_value=1e-64) Glutathione S-transferase U7 OS=Arabidopsis thaliana GN=GSTU7 PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=8e-66) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc01g081310.2.1 (e_value=2e-114) genomic_reference:SL2.40ch01 gene_region:73052539-73054069 transcript_region:SL2.40ch01:73052539..73054069+ functional_description:"Glutathione-S-transferase (AHRD V1 ***- B2BY02_9BRAS); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00007644g0005.1 protein AED:0.13 eAED:0.21 QI:7|0.71|0.75|1|1|1|8|0|436; (*GB) gi|225427804|ref|XP_002275430.1| (e_value=3e-132) PREDICTED: pseudouridine kinase [Vitis vinifera];; (*TAIR) AT1G49350.1 (e_value=2e-102) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:18265070-18267034 FORWARD LENGTH=378;; (*ITAG) Solyc01g109450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88152550-88158268 transcript_region:SL2.40ch01:88152550..88158268- go_terms:GO:0006014 functional_description:"Kinase PfkB family (AHRD V1 *-*- D7N8Y3_9FIRM); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0006014 NbS00007644g0006.1 protein AED:0.38 eAED:0.38 QI:0|0.25|0.2|0.4|0.75|0.8|5|0|191; (*ITAG) Solyc01g109440.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:88151772-88153293 transcript_region:SL2.40ch01:88151772..88153293+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026142g0005.1 protein AED:0.16 eAED:0.16 QI:343|0.90|0.91|1|0.81|0.66|12|354|706; (*GB) gi|225454125|ref|XP_002269834.1| (e_value=0.0) PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=0.0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=0.0) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc01g094340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77617107-77622316 transcript_region:SL2.40ch01:77617107..77622316+ go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- A0YRC5_LYNSP); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00010029g0005.1 protein AED:0.12 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|60 NbS00010029g0008.1 protein AED:0.19 eAED:0.19 QI:140|0.93|0.94|1|0.93|0.88|17|0|555; (*GB) gi|350535204|ref|NP_001233926.1| (e_value=0.0) insulin degrading enzyme [Solanum lycopersicum];; (*SWP) sp|O22941|PXM16_ARATH (e_value=0.0) Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1;; (*TAIR) AT2G41790.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr2:17429453-17436110 REVERSE LENGTH=970;; (*ITAG) Solyc04g015680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5956632-5977381 transcript_region:SL2.40ch04:5956632..5977381+ go_terms:GO:0004222 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q93YG9_SOLLC); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0004222 NbS00010029g0009.1 protein AED:0.56 eAED:0.66 QI:0|0.33|0|0.71|0.83|0.85|7|0|406; (*GB) gi|350535204|ref|NP_001233926.1| (e_value=2e-131) insulin degrading enzyme [Solanum lycopersicum];; (*SWP) sp|O22941|PXM16_ARATH (e_value=7e-88) Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1;; (*TAIR) AT2G41790.1 (e_value=6e-89) | Symbols: | Insulinase (Peptidase family M16) family protein | chr2:17429453-17436110 REVERSE LENGTH=970;; (*ITAG) Solyc04g015680.2.1 (e_value=3e-134) genomic_reference:SL2.40ch04 gene_region:5956632-5977381 transcript_region:SL2.40ch04:5956632..5977381+ go_terms:GO:0004222 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q93YG9_SOLLC); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0004222 NbC24856108g0002.1 protein AED:0.33 eAED:0.88 QI:0|0|0|1|0|0|2|0|161; (*GB) gi|75221017|sp|Q40593.1|VDE_TOBAC (e_value=2e-45) RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40593|VDE_TOBAC (e_value=5e-47) Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1;; (*TAIR) AT1G08550.2 (e_value=4e-40) | Symbols: NPQ1, AVDE1 | non-photochemical quenching 1 | chr1:2707462-2709387 FORWARD LENGTH=462;; (*ITAG) Solyc04g050930.2.1 (e_value=3e-46) genomic_reference:SL2.40ch04 gene_region:48132067-48135623 transcript_region:SL2.40ch04:48132067..48135623- go_terms:GO:0046422 functional_description:"Violaxanthin de-epoxidase"; GO:0046422 NbS00004114g0003.1 protein AED:0.00 eAED:0.00 QI:95|1|1|1|0.5|0.66|3|633|69; (*GB) gi|282848240|gb|ADB02901.1| (e_value=1e-29) protein transport protein SEC61 subunit gamma [Jatropha curcas];; (*SWP) sp|Q9SW34|S61G1_ARATH (e_value=4e-30) Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1;; (*TAIR) AT5G50460.1 (e_value=3e-31) | Symbols: | secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69; NbS00004114g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|2346984|dbj|BAA21926.1| (e_value=5e-52) ZPT2-9 [Petunia x hybrida];; (*SWP) sp|Q42410|ZAT12_ARATH (e_value=1e-23) Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=7e-28) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc03g093870.1.1 (e_value=9e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:48983889-48984413 transcript_region:SL2.40ch03:48983889..48984413+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00004114g0004.1 protein AED:0.11 eAED:0.11 QI:45|0.93|0.87|1|0.93|0.87|16|832|1019; (*GB) gi|359491156|ref|XP_002262922.2| (e_value=0.0) PREDICTED: telomere length regulation protein TEL2 homolog [Vitis vinifera];; (*SWP) sp|Q9DC40|TELO2_MOUSE (e_value=3e-32) Telomere length regulation protein TEL2 homolog OS=Mus musculus GN=Telo2 PE=1 SV=2;; (*TAIR) AT3G48470.1 (e_value=0.0) | Symbols: EMB2423 | embryo defective 2423 | chr3:17951689-17956754 FORWARD LENGTH=1027;; (*ITAG) Solyc10g006780.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1222546-1229429 transcript_region:SL2.40ch10:1222546..1229429- functional_description:"Telomere length regulation protein TEL2 homolog (AHRD V1 *-*- TELO2_MOUSE); contains Interpro domain(s) IPR019337 Telomere length regulation protein "; NbS00004114g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|2|0|827; (*GB) gi|225454601|ref|XP_002265002.1| (e_value=0.0) PREDICTED: tuftelin-interacting protein 11-like [Vitis vinifera];; (*SWP) sp|Q29RR5|TFP11_BOVIN (e_value=3e-127) Tuftelin-interacting protein 11 OS=Bos taurus GN=TFIP11 PE=2 SV=2;; (*TAIR) AT1G17070.1 (e_value=0.0) | Symbols: | GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain | chr1:5837653-5840202 FORWARD LENGTH=849;; (*ITAG) Solyc10g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:753117-756148 transcript_region:SL2.40ch10:753117..756148- go_terms:GO:0005515 functional_description:"Tuftelin interacting protein 11 (AHRD V1 ***- Q8N523_HUMAN); contains Interpro domain(s) IPR014809 Tuftelin interacting protein 11 "; GO:0005515 NbS00049300g0006.1 protein AED:0.02 eAED:0.02 QI:363|1|1|1|0.66|0.75|4|27|204; (*GB) gi|255561883|ref|XP_002521950.1| (e_value=1e-48) synovial sarcoma associated ss18 protein, putative [Ricinus communis];; (*TAIR) AT5G28640.1 (e_value=5e-43) | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family protein | chr5:10647831-10649620 REVERSE LENGTH=210;; (*ITAG) Solyc04g009820.2.1 (e_value=3e-59) genomic_reference:SL2.40ch04 gene_region:3139217-3143959 transcript_region:SL2.40ch04:3139217..3143959+ functional_description:"Calcium-responsive transactivator (AHRD V1 *--- CREST_XENLA); contains Interpro domain(s) IPR007726 SSXT "; NbS00049300g0007.1 protein AED:0.12 eAED:0.12 QI:222|1|1|1|0.8|0.87|16|448|378; (*GB) gi|225431029|ref|XP_002279875.1| (e_value=0.0) PREDICTED: protein pelota [Vitis vinifera];; (*SWP) sp|Q58DV0|PELO_BOVIN (e_value=5e-139) Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2;; (*TAIR) AT4G27650.1 (e_value=0.0) | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1) family protein | chr4:13803459-13807556 REVERSE LENGTH=378;; (*ITAG) Solyc04g009810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3117554-3125731 transcript_region:SL2.40ch04:3117554..3125731- go_terms:GO:0005515 functional_description:"Pelota homolog (AHRD V1 ***- C3KIY5_ANOFI); contains Interpro domain(s) IPR004405 Probable translation factor pelota "; GO:0005515 NbS00022084g0004.1 protein AED:0.04 eAED:0.11 QI:0|0|0|1|0|0|2|0|165; (*GB) gi|255587211|ref|XP_002534182.1| (e_value=8e-36) copper transporter, putative [Ricinus communis];; (*SWP) sp|Q8SAA5|COPT4_ARATH (e_value=2e-27) Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2;; (*TAIR) AT2G37925.1 (e_value=1e-28) | Symbols: COPT4 | copper transporter 4 | chr2:15870258-15870695 REVERSE LENGTH=145;; (*ITAG) Solyc10g084980.1.1 (e_value=1e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63653579-63655433 transcript_region:SL2.40ch10:63653579..63655433- go_terms:GO:0016021 functional_description:"Copper transporter (AHRD V1 *-*- B9HC68_POPTR); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0016021 NbS00031231g0001.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|1|1|2|0|307; (*GB) gi|317106634|dbj|BAJ53140.1| (e_value=3e-124) JHL05D22.11 [Jatropha curcas];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=1e-49) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT2G45630.2 (e_value=1e-103) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18797089 FORWARD LENGTH=338;; (*ITAG) Solyc01g093990.2.1 (e_value=4e-117) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00049618g0004.1 protein AED:0.35 eAED:0.36 QI:0|0.5|0|1|0.5|0.33|3|0|225; (*GB) gi|350537501|ref|NP_001234296.1| (e_value=2e-90) homeodomain leucine zipper protein [Solanum lycopersicum];; (*SWP) sp|Q02283|HAT5_ARATH (e_value=1e-46) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=1e-47) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc02g086930.2.1 (e_value=4e-93) genomic_reference:SL2.40ch02 gene_region:44097960-44101461 transcript_region:SL2.40ch02:44097960..44101461+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0043565 NbS00031377g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc11g012600.1.1 (e_value=2e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5390681-5392234 transcript_region:SL2.40ch11:5390681..5392234+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010580 Ribosome associated membrane RAMP4 "; NbS00031377g0006.1 protein AED:0.13 eAED:0.14 QI:0|1|0.5|1|1|0.75|4|0|183; (*GB) gi|225467985|ref|XP_002269165.1| (e_value=1e-72) PREDICTED: uncharacterized protein LOC100256556 [Vitis vinifera];; (*TAIR) AT4G17240.2 (e_value=7e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages. | chr4:9666799-9668292 REVERSE LENGTH=327;; (*ITAG) Solyc11g012610.1.1 (e_value=5e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5392826-5396227 transcript_region:SL2.40ch11:5392826..5396227- functional_description:"Unknown Protein (AHRD V1)"; NbS00039316g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|225446289|ref|XP_002267226.1| (e_value=1e-66) PREDICTED: F-box protein At5g07610 [Vitis vinifera];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=2e-37) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=1e-38) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc03g117270.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:60500607-60501878 transcript_region:SL2.40ch03:60500607..60501878+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00039316g0001.1 protein AED:0.38 eAED:0.38 QI:55|0|0.5|0.5|1|1|2|0|122; (*GB) gi|296086848|emb|CBI33015.3| (e_value=4e-44) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G26360.1 (e_value=2e-38) | Symbols: | Ribosomal protein S21 family protein | chr3:9655963-9656373 REVERSE LENGTH=101;; (*ITAG) Solyc10g054060.1.1 (e_value=2e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50012917-50016789 transcript_region:SL2.40ch10:50012917..50016789- go_terms:GO:0005840 functional_description:"Genomic DNA chromosome 3 BAC clone F20C19 (AHRD V1 ***- Q9LIP0_ARATH); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00061408g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.33|1|1|0.66|3|0|123; (*GB) gi|2499966|sp|Q41228.1|PSAEA_NICSY (e_value=5e-50) RecName: Full=Photosystem I reaction center subunit IV A, chloroplastic; Short=PSI-E A; Contains: RecName: Full=Photosystem I reaction center subunit IV A isoform 2; Flags: Precursor;; (*SWP) sp|Q41228|PSAEA_NICSY (e_value=1e-49) Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1;; (*TAIR) AT2G20260.1 (e_value=8e-29) | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145;; (*ITAG) Solyc09g063130.2.1 (e_value=4e-41) genomic_reference:SL2.40ch09 gene_region:56787134-56789056 transcript_region:SL2.40ch09:56787134..56789056+ go_terms:GO:0009536,GO:0009538 functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE "; GO:0009536,GO:0009538 NbS00000303g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|147792816|emb|CAN68810.1| (e_value=2e-73) hypothetical protein VITISV_001082 [Vitis vinifera];; (*SWP) sp|Q9LVS3|PP422_ARATH (e_value=7e-53) Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1;; (*TAIR) AT5G47360.1 (e_value=5e-54) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19214445-19215878 REVERSE LENGTH=477;; (*ITAG) Solyc08g078280.1.1 (e_value=1e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59258619-59260049 transcript_region:SL2.40ch08:59258619..59260049- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00000303g0002.1 protein AED:0.44 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|359474405|ref|XP_003631455.1| (e_value=3e-20) PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera];; (*SWP) sp|Q9LVS3|PP422_ARATH (e_value=2e-12) Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1;; (*TAIR) AT5G47360.1 (e_value=1e-13) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19214445-19215878 REVERSE LENGTH=477;; (*ITAG) Solyc08g078280.1.1 (e_value=5e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59258619-59260049 transcript_region:SL2.40ch08:59258619..59260049- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00002008g0007.1 protein AED:0.36 eAED:0.37 QI:81|0.66|0.75|1|0.33|0|4|0|209; (*GB) gi|224126451|ref|XP_002329557.1| (e_value=2e-83) hypothetical protein POPTRDRAFT_783792 [Populus trichocarpa];; (*SWP) sp|O23547|EXLB1_ARATH (e_value=2e-69) Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=1e-70) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077900.2.1 (e_value=6e-126) genomic_reference:SL2.40ch08 gene_region:58971319-58974521 transcript_region:SL2.40ch08:58971319..58974521+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WRS3_ARATH); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00002008g0010.1 protein AED:0.39 eAED:0.39 QI:0|0.6|0.66|1|0.8|0.83|6|0|242; (*GB) gi|260766931|gb|ACX50407.1| (e_value=2e-103) ATP-dependent Clp protease [Eriobotrya japonica];; (*SWP) sp|Q8LB10|CLPR4_ARATH (e_value=2e-101) ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1;; (*TAIR) AT4G17040.1 (e_value=2e-102) | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9586740-9589297 REVERSE LENGTH=305;; (*ITAG) Solyc08g077890.2.1 (e_value=3e-109) genomic_reference:SL2.40ch08 gene_region:58960412-58967215 transcript_region:SL2.40ch08:58960412..58967215+ go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** D7MC33_ARALY); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00024800g0006.1 protein AED:0.32 eAED:0.33 QI:322|0.8|0.66|1|1|1|6|0|401; (*GB) gi|126013404|gb|ABN69037.1| (e_value=0.0) protein kinase [Solanum tuberosum];; (*SWP) sp|P46573|APK1B_ARATH (e_value=0.0) Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2;; (*TAIR) AT2G28930.2 (e_value=0.0) | Symbols: APK1B, PK1B | protein kinase 1B | chr2:12424551-12426565 FORWARD LENGTH=412;; (*ITAG) Solyc10g084770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63516371-63519177 transcript_region:SL2.40ch10:63516371..63519177+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 ***- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024800g0007.1 protein AED:0.07 eAED:0.15 QI:0|0|0|1|0|0|3|0|169; (*GB) gi|356539856|ref|XP_003538409.1| (e_value=1e-60) PREDICTED: expansin-A3-like [Glycine max];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=2e-56) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=1e-57) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc09g010860.2.1 (e_value=4e-61) genomic_reference:SL2.40ch09 gene_region:4181506-4184618 transcript_region:SL2.40ch09:4181506..4184618- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00002742g0008.1 protein AED:0.15 eAED:0.16 QI:220|0.8|0.66|1|0.4|0.5|6|0|763; (*GB) gi|225425823|ref|XP_002264918.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|O48700|PUB6_ARATH (e_value=0.0) U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2;; (*TAIR) AT1G24330.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:8631779-8634835 FORWARD LENGTH=771;; (*ITAG) Solyc05g015070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9775132-9780790 transcript_region:SL2.40ch05:9775132..9780790- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00002742g0009.1 protein AED:0.17 eAED:0.17 QI:214|1|1|1|1|1|2|220|485; (*GB) gi|359473565|ref|XP_002265580.2| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Vitis vinifera];; (*SWP) sp|Q7ZV60|BCS1_DANRE (e_value=1e-32) Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2;; (*TAIR) AT3G50940.1 (e_value=2e-163) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18934086-18935528 FORWARD LENGTH=451;; (*ITAG) Solyc05g015060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9773362-9775130 transcript_region:SL2.40ch05:9773362..9775130+ go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00039364g0002.1 protein AED:0.02 eAED:0.05 QI:335|1|0.5|1|0|0.5|2|0|307; (*GB) gi|255544618|ref|XP_002513370.1| (e_value=9e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G79220.1 (e_value=9e-107) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29799227-29800426 FORWARD LENGTH=399;; (*ITAG) Solyc02g067960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32612872-32614011 transcript_region:SL2.40ch02:32612872..32614011- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7KVZ3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00039364g0004.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|122; (*GB) gi|224141267|ref|XP_002323996.1| (e_value=6e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10690.1 (e_value=7e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3550236-3550568 REVERSE LENGTH=110;; (*ITAG) Solyc02g067810.1.1 (e_value=4e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32502384-32502698 transcript_region:SL2.40ch02:32502384..32502698+ functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00039364g0001.1 protein AED:0.17 eAED:0.43 QI:0|0|0.5|1|0|0.5|2|131|330; (*GB) gi|255560906|ref|XP_002521466.1| (e_value=3e-105) F-box/LRR-repeat protein, putative [Ricinus communis];; (*TAIR) AT5G40470.1 (e_value=8e-67) | Symbols: | RNI-like superfamily protein | chr5:16208255-16209745 REVERSE LENGTH=496;; (*ITAG) Solyc02g086440.2.1 (e_value=3e-81) genomic_reference:SL2.40ch02 gene_region:43683988-43686819 transcript_region:SL2.40ch02:43683988..43686819+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00053156g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|537; (*GB) gi|224091337|ref|XP_002309226.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU79|PAO5_ARATH (e_value=0.0) Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1;; (*TAIR) AT4G29720.1 (e_value=0.0) | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533;; (*ITAG) Solyc07g039310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:44257867-44259408 transcript_region:SL2.40ch07:44257867..44259408+ go_terms:GO:0046592 functional_description:"Polyamine oxidase (AHRD V1 **** Q8LL67_AMAHP); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592 NbS00001177g0012.1 protein AED:0.05 eAED:0.05 QI:233|0.4|0.66|1|0.6|0.5|6|83|711; (*GB) gi|225464352|ref|XP_002263244.1| (e_value=6e-106) PREDICTED: uncharacterized protein LOC100265216 [Vitis vinifera];; (*TAIR) AT3G18670.1 (e_value=2e-68) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc05g041440.2.1 (e_value=1e-126) genomic_reference:SL2.40ch05 gene_region:50947911-50949818 transcript_region:SL2.40ch05:50947911..50949818- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH)"; GO:0005515 NbS00001177g0011.1 protein AED:0.18 eAED:0.19 QI:66|0.62|0.66|1|1|1|9|127|572; (*GB) gi|224139158|ref|XP_002326782.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT4G27860.2 (e_value=9e-27) | Symbols: | vacuolar iron transporter (VIT) family protein | chr4:13873808-13876240 FORWARD LENGTH=596;; (*ITAG) Solyc09g059460.2.1 (e_value=4e-100) genomic_reference:SL2.40ch09 gene_region:50124094-50128390 transcript_region:SL2.40ch09:50124094..50128390+ functional_description:"At5g24290 (Fragment) (AHRD V1 *-*- Q45H30_ARATH); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00006769g0021.1 protein AED:0.01 eAED:0.01 QI:253|1|1|1|1|1|3|597|340; (*GB) gi|6179940|gb|AAF05720.1|AF191497_1 (e_value=3e-176) DnaJ-like protein [Nicotiana tabacum];; (*SWP) sp|P59910|DJB13_HUMAN (e_value=9e-71) DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1;; (*TAIR) AT2G20560.1 (e_value=4e-142) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc09g005350.2.1 (e_value=6e-140) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00006769g0022.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|252|921; (*GB) gi|255536713|ref|XP_002509423.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT1G28440.1 (e_value=0.0) | Symbols: HSL1 | HAESA-like 1 | chr1:9996914-10000171 FORWARD LENGTH=996;; (*ITAG) Solyc07g053600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59345101-59348898 transcript_region:SL2.40ch07:59345101..59348898- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006769g0026.1 protein AED:0.07 eAED:0.07 QI:0|0.70|0.55|0.94|0.94|0.94|18|233|1804; (*GB) gi|225446457|ref|XP_002275272.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250601 [Vitis vinifera];; (*TAIR) AT5G44180.2 (e_value=0.0) | Symbols: | Homeodomain-like transcriptional regulator | chr5:17783172-17789872 FORWARD LENGTH=1507;; (*ITAG) Solyc07g053610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59356951-59373279 transcript_region:SL2.40ch07:59356951..59373279+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *--- D6BV21_ORYSJ); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0006355,GO:0045449 NbS00054833g0003.1 protein AED:0.14 eAED:0.14 QI:17|0.66|0.5|0.75|0.33|0.75|4|0|515; (*GB) gi|24745923|dbj|BAC23044.1| (e_value=0.0) cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=3e-110) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=1e-105) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc11g056670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45056892-45058933 transcript_region:SL2.40ch11:45056892..45058933- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00024651g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|0.66|1|1|3|0|281; (*GB) gi|224119516|ref|XP_002331180.1| (e_value=4e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72490.1 (e_value=2e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc06g062970.1.1 (e_value=2e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36137415-36139378 transcript_region:SL2.40ch06:36137415..36139378+ functional_description:"F1L3.5 (AHRD V1 **-- Q9LNR9_ARATH)"; NbS00031526g0004.1 protein AED:0.21 eAED:0.21 QI:53|1|1|1|0.8|0.83|6|142|275; (*GB) gi|77745477|gb|ABB02637.1| (e_value=9e-136) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|Q86JE5|ERD2_DICDI (e_value=3e-26) ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1;; (*TAIR) AT3G25160.1 (e_value=2e-107) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc09g059270.2.1 (e_value=5e-135) genomic_reference:SL2.40ch09 gene_region:49758568-49762279 transcript_region:SL2.40ch09:49758568..49762279+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00013188g0003.1 protein AED:0.25 eAED:0.34 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|40287496|gb|AAR83862.1| (e_value=5e-82) elicitor-inducible protein EIG-J7 [Capsicum annuum];; (*TAIR) AT4G39730.1 (e_value=4e-67) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc04g054980.2.1 (e_value=3e-95) genomic_reference:SL2.40ch04 gene_region:52664826-52665968 transcript_region:SL2.40ch04:52664826..52665968+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 *--- LOXH1_MOUSE); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00013188g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|3|0|98 NbS00003279g0006.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|636; (*GB) gi|297742976|emb|CBI35843.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3E991|Y5269_ARATH (e_value=3e-169) Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4;; (*TAIR) AT3G42880.1 (e_value=3e-179) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633;; (*ITAG) Solyc03g122230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64176196-64178821 transcript_region:SL2.40ch03:64176196..64178821+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00003279g0004.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.33|1|1|3|0|72 NbS00013507g0012.1 protein AED:0.05 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|407; (*GB) gi|77999245|gb|ABB16969.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q9SF40|RL4A_ARATH (e_value=0.0) 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=0.0) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00013507g0010.1 protein AED:0.13 eAED:0.13 QI:145|1|1|1|1|1|10|235|456; (*GB) gi|255697190|emb|CAR92295.1| (e_value=0.0) relative to APETALA2 1 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|P47927|AP2_ARATH (e_value=4e-94) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT2G28550.3 (e_value=1e-102) | Symbols: RAP2.7 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=464;; (*ITAG) Solyc09g007260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:856629-859952 transcript_region:SL2.40ch09:856629..859952+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g79700 (AHRD V1 *--- AP2L3_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00013507g0011.1 protein AED:0.34 eAED:0.41 QI:296|0.66|0.71|1|0.33|0.42|7|83|111 NbS00013773g0006.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.16|0.8|0.83|6|0|168; (*GB) gi|242092488|ref|XP_002436734.1| (e_value=3e-24) hypothetical protein SORBIDRAFT_10g007810 [Sorghum bicolor];; (*SWP) sp|D7KQR8|CAL_ARALL (e_value=2e-14) Transcription factor CAULIFLOWER OS=Arabidopsis lyrata subsp. lyrata GN=CAL PE=3 SV=1;; (*TAIR) AT1G77950.2 (e_value=2e-20) | Symbols: AGL67 | AGAMOUS-like 67 | chr1:29307029-29309667 FORWARD LENGTH=252;; (*ITAG) Solyc04g078300.2.1 (e_value=9e-22) genomic_reference:SL2.40ch04 gene_region:60651560-60654995 transcript_region:SL2.40ch04:60651560..60654995+ go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00021643g0003.1 protein AED:0.16 eAED:0.16 QI:448|0.75|0.8|0.8|0|0.2|5|0|271; (*GB) gi|329025162|gb|AEB71564.1| (e_value=1e-121) squamosa promoter binding protein-like protein [Solanum chacoense];; (*SWP) sp|Q8GXL3|SPL8_ARATH (e_value=2e-76) Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2;; (*TAIR) AT1G02065.1 (e_value=2e-77) | Symbols: SPL8 | squamosa promoter binding protein-like 8 | chr1:365625-367149 FORWARD LENGTH=333;; (*ITAG) Solyc10g018780.1.1 (e_value=1e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:10145378-10146530 transcript_region:SL2.40ch10:10145378..10146530- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 1 (AHRD V1 *-*- Q1MU24_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00017676g0002.1 protein AED:0.34 eAED:0.34 QI:216|0.5|0.33|1|0|0|3|0|127; (*ITAG) Solyc05g054210.2.1 (e_value=6e-15) genomic_reference:SL2.40ch05 gene_region:63317491-63319450 transcript_region:SL2.40ch05:63317491..63319450- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00001431g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|231; (*GB) gi|4138262|emb|CAA69353.1| (e_value=4e-136) aquaporin 1 [Nicotiana tabacum];; (*SWP) sp|P25818|TIP11_ARATH (e_value=3e-126) Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1;; (*TAIR) AT2G36830.1 (e_value=2e-127) | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251;; (*ITAG) Solyc06g074820.2.1 (e_value=9e-137) genomic_reference:SL2.40ch06 gene_region:42747475-42749825 transcript_region:SL2.40ch06:42747475..42749825+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- D1M6Z5_CAPAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00017013g0003.1 protein AED:0.03 eAED:0.03 QI:496|0.8|0.83|1|1|1|6|405|338; (*GB) gi|225430605|ref|XP_002266463.1| (e_value=6e-92) PREDICTED: transcription repressor KAN1 [Vitis vinifera];; (*SWP) sp|Q93WJ9|KAN1_ARATH (e_value=6e-57) Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1;; (*TAIR) AT5G16560.1 (e_value=5e-58) | Symbols: KAN, KAN1 | Homeodomain-like superfamily protein | chr5:5407365-5411092 REVERSE LENGTH=403;; (*ITAG) Solyc05g051060.2.1 (e_value=2e-102) genomic_reference:SL2.40ch05 gene_region:60389537-60395010 transcript_region:SL2.40ch05:60389537..60395010- go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 *--* Q84NK2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00002932g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|511; (*GB) gi|18000072|gb|AAL54887.1|AF092916_1 (e_value=0.0) cytochrome P450-dependent fatty acid hydroxylase [Nicotiana tabacum];; (*SWP) sp|O81117|C94A1_VICSA (e_value=0.0) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT5G63450.1 (e_value=7e-137) | Symbols: CYP94B1 | cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510;; (*ITAG) Solyc07g006890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1747021-1748529 transcript_region:SL2.40ch07:1747021..1748529+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002932g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.28|1|0.66|0.57|7|0|658; (*GB) gi|359492697|ref|XP_002281021.2| (e_value=7e-122) PREDICTED: BEL1-like homeodomain protein 3-like [Vitis vinifera];; (*SWP) sp|Q9SIW1|BLH7_ARATH (e_value=2e-96) BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1;; (*TAIR) AT2G16400.1 (e_value=1e-97) | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:7101490-7103200 REVERSE LENGTH=482;; (*ITAG) Solyc04g080790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62464436-62467801 transcript_region:SL2.40ch04:62464436..62467801- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 3 (AHRD V1 *--- BLH3_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00002932g0011.1 protein AED:0.16 eAED:0.16 QI:131|1|1|1|0.7|0.63|11|742|377; (*GB) gi|302142558|emb|CBI19761.3| (e_value=6e-163) unnamed protein product [Vitis vinifera];; (*SWP) sp|P74038|RSMI_SYNY3 (e_value=1e-76) Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1;; (*TAIR) AT1G45110.1 (e_value=5e-158) | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methylases | chr1:17052572-17054546 FORWARD LENGTH=343;; (*ITAG) Solyc04g080800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62473043-62478543 transcript_region:SL2.40ch04:62473043..62478543- go_terms:GO:0005515,GO:0003824 functional_description:"Ribosomal RNA small subunit methyltransferase I (AHRD V1 ***- RSMI_SYNY3); contains Interpro domain(s) IPR008189 Uncharacterised protein family UPF0011 "; GO:0005515,GO:0003824 NbC25717203g0003.1 protein AED:0.20 eAED:0.20 QI:48|1|0.5|1|1|1|2|637|38 NbS00036104g0011.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|0.5|0.33|3|0|79 NbS00036104g0012.1 protein AED:0.29 eAED:0.29 QI:167|0.87|0.77|1|0.62|0.44|9|302|343; (*GB) gi|297740117|emb|CBI30299.3| (e_value=3e-142) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82782|HIS4_ARATH (e_value=2e-127) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic OS=Arabidopsis thaliana GN=HIS6 PE=2 SV=1;; (*TAIR) AT2G36230.1 (e_value=1e-128) | Symbols: APG10, HISN3 | Aldolase-type TIM barrel family protein | chr2:15193878-15195509 REVERSE LENGTH=304;; (*ITAG) Solyc05g056150.2.1 (e_value=2e-174) genomic_reference:SL2.40ch05 gene_region:64692116-64697473 transcript_region:SL2.40ch05:64692116..64697473- go_terms:GO:0003949 functional_description:"1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (AHRD V1 **** D7G369_ECTSI); contains Interpro domain(s) IPR011858 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic "; GO:0003949 NbS00033613g0115.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.55|1|0.75|0.55|9|0|1002 NbS00033613g0111.1 protein AED:0.18 eAED:0.18 QI:571|1|1|1|1|1|6|193|481 NbS00033613g0113.1 protein AED:0.27 eAED:0.27 QI:239|0.54|0.41|1|0.54|0.5|12|0|480 NbS00033613g0102.1 protein AED:0.48 eAED:0.72 QI:0|0|0|1|1|1|2|0|103 NbS00027030g0001.1 protein AED:0.15 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|341; (*GB) gi|147837629|emb|CAN72487.1| (e_value=1e-86) hypothetical protein VITISV_020885 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=7e-19) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G06470.1 (e_value=2e-49) | Symbols: | Glutaredoxin family protein | chr5:1974659-1975378 REVERSE LENGTH=239;; (*ITAG) Solyc11g006430.1.1 (e_value=3e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1136221-1137306 transcript_region:SL2.40ch11:1136221..1137306- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *--- D7LZQ8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00042440g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|219; (*GB) gi|225439433|ref|XP_002265850.1| (e_value=6e-96) PREDICTED: uncharacterized protein LOC100252319 [Vitis vinifera];; (*SWP) sp|Q9SR92|STR10_ARATH (e_value=1e-79) Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1;; (*TAIR) AT3G08920.1 (e_value=1e-80) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:2712274-2713117 FORWARD LENGTH=214;; (*ITAG) Solyc10g076700.1.1 (e_value=3e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58965981-58967370 transcript_region:SL2.40ch10:58965981..58967370+ functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00042440g0007.1 protein AED:0.13 eAED:0.13 QI:193|0.87|0.88|1|1|1|9|118|574; (*GB) gi|2853041|emb|CAA63777.1| (e_value=0.0) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase [Solanum tuberosum];; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=0.0) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2 PE=1 SV=1;; (*TAIR) AT3G08510.2 (e_value=0.0) | Symbols: ATPLC2, PLC2 | phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=581;; (*ITAG) Solyc10g076710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58968235-58971638 transcript_region:SL2.40ch10:58968235..58971638- go_terms:GO:0023034,GO:0006629,GO:0005509 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region "; GO:0023034,GO:0006629,GO:0005509 NbS00013392g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|0.8|1|1|5|0|264; (*GB) gi|1173257|sp|P46300.1|RS4_SOLTU (e_value=4e-173) RecName: Full=40S ribosomal protein S4;; (*SWP) sp|P46300|RS4_SOLTU (e_value=1e-174) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=2e-168) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc02g070360.2.1 (e_value=3e-177) genomic_reference:SL2.40ch02 gene_region:34691346-34693734 transcript_region:SL2.40ch02:34691346..34693734+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00013392g0006.1 protein AED:0.14 eAED:0.13 QI:221|1|0.92|1|0.61|0.57|14|1391|560; (*GB) gi|365222882|gb|AEW69793.1| (e_value=0.0) Hop-interacting protein THI030 [Solanum lycopersicum];; (*TAIR) AT2G34640.1 (e_value=0.0) | Symbols: PTAC12, HMR | plastid transcriptionally active 12 | chr2:14582061-14584345 REVERSE LENGTH=527;; (*ITAG) Solyc02g070390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34698168-34705261 transcript_region:SL2.40ch02:34698168..34705261- go_terms:GO:0023034 functional_description:"PTAC12 (AHRD V1 ***- D7LH29_ARALY)"; GO:0023034 NbS00030006g0002.1 protein AED:0.21 eAED:0.44 QI:0|0.75|0.4|1|1|1|5|0|395; (*GB) gi|359473151|ref|XP_002282388.2| (e_value=3e-129) PREDICTED: probable protein phosphatase 2C 14 [Vitis vinifera];; (*SWP) sp|Q9FXE4|P2C14_ARATH (e_value=5e-100) Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2;; (*TAIR) AT1G67820.1 (e_value=4e-101) | Symbols: | Protein phosphatase 2C family protein | chr1:25429882-25431484 FORWARD LENGTH=445;; (*ITAG) Solyc06g082080.2.1 (e_value=3e-71) genomic_reference:SL2.40ch06 gene_region:44304768-44306777 transcript_region:SL2.40ch06:44304768..44306777+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00014928g0007.1 protein AED:0.18 eAED:0.28 QI:0|0|0|1|0.33|0.25|4|0|208 NbS00017878g0005.1 protein AED:0.02 eAED:0.02 QI:540|1|1|1|0.25|0.2|5|434|218; (*GB) gi|297742082|emb|CBI33869.3| (e_value=2e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=7e-19) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G23910.1 (e_value=9e-63) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10177902-10179789 FORWARD LENGTH=304;; (*ITAG) Solyc06g061280.2.1 (e_value=3e-125) genomic_reference:SL2.40ch06 gene_region:35665755-35668469 transcript_region:SL2.40ch06:35665755..35668469- go_terms:GO:0033729 functional_description:"Cinnamoyl-CoA reductase-like protein (AHRD V1 **** Q9M0B3_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00014092g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|3|280|265; (*GB) gi|115794|sp|P27489.1|CB23_SOLLC (e_value=4e-177) RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic; AltName: Full=LHCII type III CAB-13; Flags: Precursor;; (*SWP) sp|P27489|CB23_SOLLC (e_value=1e-178) Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1;; (*TAIR) AT5G54270.1 (e_value=2e-168) | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038424-22039383 FORWARD LENGTH=265;; (*ITAG) Solyc07g063600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63262431-63264147 transcript_region:SL2.40ch07:63262431..63264147- go_terms:GO:0005198 functional_description:"Chlorophyll a-b binding protein 13, chloroplastic (AHRD V1 ***- CB23_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005198 NbS00014092g0009.1 protein AED:0.13 eAED:0.13 QI:235|0.76|0.70|1|0.73|0.70|27|0|1139; (*GB) gi|116047953|gb|ABJ53202.1| (e_value=0.0) myosin VIII-B [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=1e-128) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G54280.2 (e_value=0.0) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220;; (*ITAG) Solyc07g063590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00029720g0001.1 protein AED:0.40 eAED:0.48 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|28261723|ref|NP_783238.1| (e_value=6e-35) ATP synthase CF1 epsilon subunit [Atropa belladonna];; (*SWP) sp|Q8S8W9|ATPE_ATRBE (e_value=2e-36) ATP synthase epsilon chain, chloroplastic OS=Atropa belladonna GN=atpE PE=3 SV=1;; (*ITAG) ATCG00470.1 (e_value=1e-33) | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663 REVERSE LENGTH=132;; (*ITAG) Solyc01g017220.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23893684-23893974 transcript_region:SL2.40ch01:23893684..23893974- go_terms:GO:0045261 functional_description:"ATP synthase epsilon chain chloroplastic (AHRD V1 ***- D3WDX2_9ROSA); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0045261 NbS00030154g0006.1 protein AED:0.22 eAED:0.23 QI:230|0.62|0.66|1|0.37|0.33|9|280|404; (*GB) gi|225463055|ref|XP_002268417.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100267143 [Vitis vinifera];; (*TAIR) AT2G12400.1 (e_value=3e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541;; (*ITAG) Solyc08g041710.2.1 (e_value=6e-84) genomic_reference:SL2.40ch08 gene_region:26805588-26812631 transcript_region:SL2.40ch08:26805588..26812631- functional_description:"Unknown Protein (AHRD V1)"; NbS00030154g0004.1 protein AED:0.26 eAED:0.37 QI:31|0|0|1|1|0.66|3|0|113; (*ITAG) Solyc01g073870.2.1 (e_value=4e-47) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00030154g0008.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.25|0.33|0.5|4|0|82 NbS00058725g0004.1 protein AED:0.24 eAED:0.24 QI:157|1|1|1|1|1|20|1|760; (*GB) gi|224096282|ref|XP_002310598.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P73627|Y1770_SYNY3 (e_value=3e-171) Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1;; (*TAIR) AT5G64940.2 (e_value=0.0) | Symbols: ATATH13, ATH13 | ABC2 homolog 13 | chr5:25949116-25953326 FORWARD LENGTH=761;; (*ITAG) Solyc04g054190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51052577-51062636 transcript_region:SL2.40ch04:51052577..51062636+ go_terms:GO:0005215 functional_description:"ABC-1 domain protein (AHRD V1 **-- D7E596_NOSA0); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00022916g0007.1 protein AED:0.33 eAED:0.38 QI:24|1|0.66|1|1|1|3|13|95; (*GB) gi|195615266|gb|ACG29463.1| (e_value=2e-61) brain protein 44-like protein [Zea mays];; (*SWP) sp|Q9Y5U8|BR44L_HUMAN (e_value=9e-31) Brain protein 44-like protein OS=Homo sapiens GN=BRP44L PE=1 SV=1;; (*TAIR) AT5G20090.2 (e_value=3e-62) | Symbols: | Uncharacterised protein family (UPF0041) | chr5:6787246-6788000 REVERSE LENGTH=110;; (*ITAG) Solyc08g082760.2.1 (e_value=3e-67) genomic_reference:SL2.40ch08 gene_region:62622799-62624873 transcript_region:SL2.40ch08:62622799..62624873+ go_terms:GO:0005515 functional_description:"Brain protein 44-like protein (AHRD V1 ***- B6SX80_MAIZE); contains Interpro domain(s) IPR005336 Uncharacterised protein family UPF0041 "; GO:0005515 NbS00022916g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.2|0.8|1|1|5|0|251; (*GB) gi|225426236|ref|XP_002263697.1| (e_value=3e-101) PREDICTED: bidirectional sugar transporter SWEET4 [Vitis vinifera];; (*SWP) sp|Q8LBF7|SWET7_ARATH (e_value=7e-89) Bidirectional sugar transporter SWEET7 OS=Arabidopsis thaliana GN=SWEET7 PE=2 SV=1;; (*TAIR) AT4G10850.1 (e_value=5e-90) | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family protein | chr4:6675068-6676718 FORWARD LENGTH=258;; (*ITAG) Solyc08g082770.2.1 (e_value=1e-146) genomic_reference:SL2.40ch08 gene_region:62627026-62629694 transcript_region:SL2.40ch08:62627026..62629694- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00032314g0003.1 protein AED:0.15 eAED:0.15 QI:414|1|1|1|1|1|3|122|54; (*GB) gi|356550472|ref|XP_003543611.1| (e_value=3e-25) PREDICTED: 60S ribosomal protein L28-2 [Glycine max];; (*SWP) sp|O82204|RL281_ARATH (e_value=3e-21) 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1;; (*TAIR) AT2G19730.3 (e_value=2e-22) | Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143;; (*ITAG) Solyc06g062500.2.1 (e_value=1e-30) genomic_reference:SL2.40ch06 gene_region:35820379-35822477 transcript_region:SL2.40ch06:35820379..35822477+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L28 (AHRD V1 ***- B3TLS3_ELAGV); contains Interpro domain(s) IPR002672 Ribosomal protein L28e "; GO:0005840 NbS00042591g0002.1 protein AED:0.19 eAED:0.19 QI:173|0.4|0.33|0.83|1|1|6|0|945; (*GB) gi|225438990|ref|XP_002279613.1| (e_value=0.0) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9FJX6|FH6_ARATH (e_value=1e-137) Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1;; (*TAIR) AT5G67470.1 (e_value=1e-138) | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:26926835-26930212 FORWARD LENGTH=899;; (*ITAG) Solyc03g044060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11841335-11845214 transcript_region:SL2.40ch03:11841335..11845214- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00024417g0003.1 protein AED:0.30 eAED:0.30 QI:360|0.75|0.4|1|0.75|0.8|5|528|242; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=1e-79) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.1 (e_value=1e-62) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=264;; (*ITAG) Solyc03g116780.2.1 (e_value=2e-99) genomic_reference:SL2.40ch03 gene_region:60110746-60114311 transcript_region:SL2.40ch03:60110746..60114311+ functional_description:"CUE domain containing protein (AHRD V1 **-- B6TCB4_MAIZE); contains Interpro domain(s) IPR009060 UBA-like "; NbS00003843g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|0|0|2|0|48; (*GB) gi|356497577|ref|XP_003517636.1| (e_value=3e-24) PREDICTED: probable glutamate carboxypeptidase 2-like [Glycine max];; (*SWP) sp|Q9M1S8|GCP2_ARATH (e_value=3e-19) Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3;; (*TAIR) AT5G19740.1 (e_value=8e-26) | Symbols: | Peptidase M28 family protein | chr5:6673986-6676767 FORWARD LENGTH=681;; (*ITAG) Solyc11g045250.1.1 (e_value=5e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37043969-37057788 transcript_region:SL2.40ch11:37043969..37057788- go_terms:GO:0006508 functional_description:"N-acetylated alpha-linked acidic dipeptidase 2 (AHRD V1 **-- Q3UZV6_MOUSE); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00003843g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|313586565|gb|ADR71293.1| (e_value=1e-27) hypothetical protein 17 [Hevea brasiliensis];; (*ITAG) Solyc12g008560.1.1 (e_value=1e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1952805-1953047 transcript_region:SL2.40ch12:1952805..1953047- functional_description:"Unknown Protein (AHRD V1)"; NbS00003843g0007.1 protein AED:0.20 eAED:0.21 QI:222|0.66|0.61|1|0.83|0.84|13|243|682; (*GB) gi|359484534|ref|XP_002283565.2| (e_value=0.0) PREDICTED: probable glutamate carboxypeptidase 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M1S8|GCP2_ARATH (e_value=4e-142) Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3;; (*TAIR) AT5G19740.1 (e_value=0.0) | Symbols: | Peptidase M28 family protein | chr5:6673986-6676767 FORWARD LENGTH=681;; (*ITAG) Solyc11g045250.1.1 (e_value=6e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37043969-37057788 transcript_region:SL2.40ch11:37043969..37057788- go_terms:GO:0006508 functional_description:"N-acetylated alpha-linked acidic dipeptidase 2 (AHRD V1 **-- Q3UZV6_MOUSE); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00007071g0002.1 protein AED:0.15 eAED:0.15 QI:292|1|0.5|1|0|0|2|0|615; (*GB) gi|225445541|ref|XP_002285283.1| (e_value=0.0) PREDICTED: probable clathrin assembly protein At4g32285-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8S9J8|CAP1_ARATH (e_value=0.0) Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2;; (*TAIR) AT4G32285.2 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:15586003-15587910 FORWARD LENGTH=635;; (*ITAG) Solyc07g008060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2772065-2773909 transcript_region:SL2.40ch07:2772065..2773909+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00007071g0009.1 protein AED:0.16 eAED:0.16 QI:198|0.96|0.92|1|0.88|0.88|26|0|1133; (*GB) gi|359484207|ref|XP_002285341.2| (e_value=0.0) PREDICTED: topless-related protein 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q27GK7|TPR4_ARATH (e_value=0.0) Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2;; (*TAIR) AT3G15880.1 (e_value=0.0) | Symbols: WSIP2, TPR4 | WUS-interacting protein 2 | chr3:5364792-5371869 REVERSE LENGTH=1135;; (*ITAG) Solyc07g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2754512-2761546 transcript_region:SL2.40ch07:2754512..2761546+ go_terms:GO:0042803,GO:0016564 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00007071g0101.1 protein AED:0.26 eAED:0.26 QI:450|0.5|0.66|1|0|0.66|3|0|296 NbS00016976g0002.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|27802109|gb|AAO21304.1| (e_value=2e-46) auxin-repressed protein-like protein [Nicotiana tabacum];; (*ITAG) Solyc06g063060.2.1 (e_value=2e-34) genomic_reference:SL2.40ch06 gene_region:36201579-36203266 transcript_region:SL2.40ch06:36201579..36203266- functional_description:"Auxin-repressed protein-like protein (AHRD V1 **-- Q84KS0_TOBAC); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00016976g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|375; (*GB) gi|350536647|ref|NP_001234513.1| (e_value=0.0) transcription factor JERF1 [Solanum lycopersicum];; (*SWP) sp|Q6K7E6|ERF1_ORYSJ (e_value=1e-60) Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1;; (*TAIR) AT1G53910.3 (e_value=7e-61) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356;; (*ITAG) Solyc06g063070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36207061-36209812 transcript_region:SL2.40ch06:36207061..36209812- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00043991g0003.1 protein AED:0.42 eAED:0.42 QI:37|0.11|0|0.2|1|0.9|10|0|396; (*GB) gi|359484939|ref|XP_002266644.2| (e_value=0.0) PREDICTED: L-arabinokinase-like [Vitis vinifera];; (*SWP) sp|O23461|ARAK_ARATH (e_value=1e-173) L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1;; (*TAIR) AT4G16130.1 (e_value=7e-175) | Symbols: ARA1, ISA1, ATISA1 | arabinose kinase | chr4:9120875-9127656 FORWARD LENGTH=1039;; (*ITAG) Solyc07g016170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6369032-6386695 transcript_region:SL2.40ch07:6369032..6386695+ go_terms:GO:0004335,GO:0009702 functional_description:"Galactokinase like protein (AHRD V1 **** O23461_ARATH); contains Interpro domain(s) IPR012369 Galactokinase, glycosyltransferase "; GO:0004335,GO:0009702 NbS00043991g0008.1 protein AED:0.17 eAED:0.17 QI:669|0.69|0.57|0.92|0.69|0.64|14|0|942; (*GB) gi|350536075|ref|NP_001234740.1| (e_value=0.0) auxin response factor 19 [Solanum lycopersicum];; (*SWP) sp|Q6Z2W3|ARFE_ORYSJ (e_value=0.0) Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2;; (*TAIR) AT1G19220.1 (e_value=1e-176) | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086;; (*ITAG) Solyc07g016180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6386861-6394308 transcript_region:SL2.40ch07:6386861..6394308- go_terms:GO:0046983 functional_description:"Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046983 NbS00056349g0008.1 protein AED:0.02 eAED:0.02 QI:262|1|1|1|1|1|2|424|145; (*GB) gi|225439749|ref|XP_002274570.1| (e_value=2e-53) PREDICTED: probable histone H2A.4 isoform 1 [Vitis vinifera];; (*SWP) sp|P19177|H2A_PETCR (e_value=5e-53) Histone H2A OS=Petroselinum crispum PE=2 SV=1;; (*TAIR) AT5G02560.1 (e_value=6e-52) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc09g010400.2.1 (e_value=3e-56) genomic_reference:SL2.40ch09 gene_region:3777857-3778870 transcript_region:SL2.40ch09:3777857..3778870+ go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- B9T4D3_RICCO); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00056349g0001.1 protein AED:0.25 eAED:0.33 QI:0|0.75|0.66|1|0.87|0.77|9|0|309; (*GB) gi|255581034|ref|XP_002531333.1| (e_value=3e-122) inorganic pyrophosphatase, putative [Ricinus communis];; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=4e-108) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT3G53620.1 (e_value=2e-116) | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216;; (*ITAG) Solyc09g010380.2.1 (e_value=4e-130) genomic_reference:SL2.40ch09 gene_region:3768116-3770648 transcript_region:SL2.40ch09:3768116..3770648+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q9LFF9_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00056349g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|250; (*GB) gi|225439882|ref|XP_002278904.1| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100253357 [Vitis vinifera];; (*TAIR) AT3G53630.1 (e_value=2e-58) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19883986-19885568 FORWARD LENGTH=194;; (*ITAG) Solyc09g010390.2.1 (e_value=6e-86) genomic_reference:SL2.40ch09 gene_region:3771605-3775900 transcript_region:SL2.40ch09:3771605..3775900+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048576g0008.1 protein AED:0.05 eAED:0.05 QI:8|0.25|0.4|0.8|0|0.2|5|414|218; (*GB) gi|255548151|ref|XP_002515132.1| (e_value=1e-46) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G46900.1 (e_value=2e-42) | Symbols: | CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269678-19271987 FORWARD LENGTH=627;; (*ITAG) Solyc08g016090.2.1 (e_value=2e-115) genomic_reference:SL2.40ch08 gene_region:6646727-6657472 transcript_region:SL2.40ch08:6646727..6657472+ functional_description:"Nulp1-pending protein (AHRD V1 *--- A1CQX6_ASPCL); contains Interpro domain(s) IPR006994 Basic helix-loop-helix, Nulp1-type "; NbS00048576g0007.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|13|562|598; (*GB) gi|225443490|ref|XP_002274181.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256501 isoform 1 [Vitis vinifera];; (*TAIR) AT1G16720.1 (e_value=0.0) | Symbols: HCF173 | high chlorophyll fluorescence phenotype 173 | chr1:5723161-5726248 FORWARD LENGTH=598;; (*ITAG) Solyc08g016080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6589899-6596942 transcript_region:SL2.40ch08:6589899..6596942+ go_terms:GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *--- B3ECK3_CHLL2); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00015012g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|0|0|2|0|737; (*GB) gi|225448453|ref|XP_002269430.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 29-like [Vitis vinifera];; (*SWP) sp|Q9XEE6|C3H29_ARATH (e_value=2e-171) Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1;; (*TAIR) AT2G40140.2 (e_value=2e-172) | Symbols: CZF1, ZFAR1, SZF2, ATSZF2 | zinc finger (CCCH-type) family protein | chr2:16772537-16774330 FORWARD LENGTH=597;; (*ITAG) Solyc05g052570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61926638-61928431 transcript_region:SL2.40ch05:61926638..61928431- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00001153g0007.1 protein AED:0.23 eAED:0.23 QI:227|1|0.95|1|0.94|0.9|20|471|518; (*GB) gi|255583291|ref|XP_002532409.1| (e_value=0.0) Xylose isomerase, putative [Ricinus communis];; (*SWP) sp|Q9FKK7|XYLA_ARATH (e_value=0.0) Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2;; (*TAIR) AT5G57655.2 (e_value=0.0) | Symbols: | xylose isomerase family protein | chr5:23347030-23349805 FORWARD LENGTH=477;; (*ITAG) Solyc07g006650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1517595-1522933 transcript_region:SL2.40ch07:1517595..1522933- go_terms:GO:0005975,GO:0009045 functional_description:"Xylose isomerase (AHRD V1 ***- B9T2E0_RICCO); contains Interpro domain(s) IPR013452 Xylose isomerase, bacterial type "; GO:0005975,GO:0009045 NbS00001153g0008.1 protein AED:0.36 eAED:0.37 QI:138|0.8|0.90|1|0.1|0.09|11|262|238; (*GB) gi|358249126|ref|NP_001239997.1| (e_value=1e-124) uncharacterized protein LOC100815426 [Glycine max];; (*SWP) sp|Q96361|ARF1_BRARP (e_value=8e-122) ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3;; (*TAIR) AT2G24765.1 (e_value=2e-122) | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation factor 3 | chr2:10562822-10564961 FORWARD LENGTH=182;; (*ITAG) Solyc07g006640.2.1 (e_value=3e-129) genomic_reference:SL2.40ch07 gene_region:1506417-1517122 transcript_region:SL2.40ch07:1506417..1517122+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor 3 (AHRD V1 ***- B4FM64_MAIZE); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525,GO:0005622 NbS00000449g0006.1 protein AED:0.09 eAED:0.09 QI:18|0.66|1|1|1|1|4|354|182; (*GB) gi|30685853|ref|NP_173279.2| (e_value=8e-20) Peptidyl-tRNA hydrolase [Arabidopsis thaliana];; (*SWP) sp|Q8GW64|PTHC_ARATH (e_value=2e-21) Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2;; (*TAIR) AT1G18440.1 (e_value=2e-22) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr1:6345994-6347686 FORWARD LENGTH=288;; (*ITAG) Solyc12g037970.1.1 (e_value=2e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:33685764-33688566 transcript_region:SL2.40ch12:33685764..33688566+ go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00000449g0007.1 protein AED:0.25 eAED:0.25 QI:174|0.93|0.93|1|0.66|0.75|16|0|361; (*GB) gi|356504541|ref|XP_003521054.1| (e_value=0.0) PREDICTED: actin-related protein 4-like [Glycine max];; (*SWP) sp|Q84M92|ARP4_ARATH (e_value=0.0) Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1;; (*TAIR) AT1G18450.1 (e_value=0.0) | Symbols: ATARP4, ARP4 | actin-related protein 4 | chr1:6348199-6351766 FORWARD LENGTH=441;; (*ITAG) Solyc12g037980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:33727209-33744596 transcript_region:SL2.40ch12:33727209..33744596+ go_terms:GO:0005515 functional_description:"Actin-like protein 6A (AHRD V1 ***- B6TTQ6_MAIZE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbS00028878g0010.1 protein AED:0.08 eAED:0.08 QI:52|1|1|1|0.83|0.85|7|99|412; (*GB) gi|225458559|ref|XP_002282523.1| (e_value=0.0) PREDICTED: patatin group A-3 [Vitis vinifera];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=4e-118) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=2e-177) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61350800-61354292 transcript_region:SL2.40ch04:61350800..61354292- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00028878g0009.1 protein AED:0.29 eAED:0.29 QI:109|0.8|0.66|1|0.8|0.66|6|397|318; (*GB) gi|224136700|ref|XP_002326923.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT08|PSDE_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1;; (*TAIR) AT5G23540.1 (e_value=0.0) | Symbols: | Mov34/MPN/PAD-1 family protein | chr5:7937772-7939339 FORWARD LENGTH=308;; (*ITAG) Solyc04g079200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61339502-61344701 transcript_region:SL2.40ch04:61339502..61344701- go_terms:GO:0070628 functional_description:"26S proteasome regulatory subunit (AHRD V1 **** A8HPA0_CHLRE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0070628 NbS00026194g0009.1 protein AED:0.09 eAED:0.09 QI:160|1|1|1|0|0.5|2|240|92; (*GB) gi|255552902|ref|XP_002517494.1| (e_value=4e-44) transcription regulator, putative [Ricinus communis];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=1e-26) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT3G28857.1 (e_value=8e-44) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92;; (*ITAG) Solyc02g067380.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:32160671-32162251 transcript_region:SL2.40ch02:32160671..32162251+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00026194g0001.1 protein AED:0.12 eAED:0.12 QI:392|1|0.5|1|0|0|2|0|77; (*GB) gi|225425748|ref|XP_002276614.1| (e_value=1e-17) PREDICTED: protein vip1 isoform 1 [Vitis vinifera];; (*TAIR) AT1G14340.1 (e_value=8e-13) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc02g067390.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:32170896-32174750 transcript_region:SL2.40ch02:32170896..32174750+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00026194g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|359488904|ref|XP_003633843.1| (e_value=2e-106) PREDICTED: uncharacterized protein At5g39865-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=3e-89) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G39865.1 (e_value=2e-90) | Symbols: | Glutaredoxin family protein | chr5:15965560-15966732 REVERSE LENGTH=390;; (*ITAG) Solyc02g067400.1.1 (e_value=2e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32175252-32176230 transcript_region:SL2.40ch02:32175252..32176230- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *-*- D7MJF8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00041370g0006.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|251; (*GB) gi|147805270|emb|CAN60132.1| (e_value=3e-32) hypothetical protein VITISV_000884 [Vitis vinifera];; (*SWP) sp|Q9FGF8|ABR1_ARATH (e_value=4e-19) Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1;; (*TAIR) AT5G64750.1 (e_value=3e-20) | Symbols: ABR1 | Integrase-type DNA-binding superfamily protein | chr5:25891679-25893656 FORWARD LENGTH=391;; (*ITAG) Solyc04g012050.2.1 (e_value=5e-51) genomic_reference:SL2.40ch04 gene_region:4376146-4378819 transcript_region:SL2.40ch04:4376146..4378819- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00022939g0006.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0.4|1|0.25|0.4|5|0|366; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=0.0) strictosidine synthase, putative [Ricinus communis];; (*SWP) sp|Q3T0E5|APMAP_BOVIN (e_value=1e-46) Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1;; (*TAIR) AT1G08470.1 (e_value=0.0) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00004664g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|0.5|2|0|277; (*GB) gi|71370257|gb|AAZ30376.1| (e_value=9e-150) PHB1 [Nicotiana benthamiana];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=4e-85) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=3e-135) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc05g051510.2.1 (e_value=3e-151) genomic_reference:SL2.40ch05 gene_region:61017078-61019992 transcript_region:SL2.40ch05:61017078..61019992- go_terms:GO:0005515 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0005515 NbS00001086g0003.1 protein AED:0.20 eAED:0.20 QI:139|1|1|1|1|1|14|508|742; (*GB) gi|225464936|ref|XP_002275292.1| (e_value=0.0) PREDICTED: protein transport protein Sec24-like At3g07100 isoform 1 [Vitis vinifera];; (*SWP) sp|Q876F5|SC242_SACBA (e_value=6e-21) Protein transport protein SEC24-2 OS=Saccharomyces bayanus GN=SEC242 PE=3 SV=1;; (*TAIR) AT2G27460.1 (e_value=0.0) | Symbols: | sec23/sec24 transport family protein | chr2:11740670-11744867 FORWARD LENGTH=745;; (*ITAG) Solyc11g068500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50281644-50291621 transcript_region:SL2.40ch11:50281644..50291621- go_terms:GO:0030127 functional_description:"Transport protein SEC24 (AHRD V1 ***- C1H2P3_PARBA); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0030127 NbS00049158g0002.1 protein AED:0.14 eAED:0.14 QI:0|1|0.87|1|1|1|8|0|559; (*GB) gi|13623892|dbj|BAB41076.1| (e_value=0.0) MAR-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9MAB3|NOP5B_ARATH (e_value=0.0) Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1;; (*TAIR) AT3G05060.1 (e_value=0.0) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533;; (*ITAG) Solyc09g083080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64141872-64145889 transcript_region:SL2.40ch09:64141872..64145889- go_terms:GO:0051082 functional_description:"Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0051082 NbS00049158g0004.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|13623892|dbj|BAB41076.1| (e_value=1e-26) MAR-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9MAB3|NOP5B_ARATH (e_value=4e-25) Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1;; (*TAIR) AT3G05060.1 (e_value=3e-26) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533;; (*ITAG) Solyc05g055880.2.1 (e_value=3e-31) genomic_reference:SL2.40ch05 gene_region:64487453-64492513 transcript_region:SL2.40ch05:64487453..64492513- go_terms:GO:0051082 functional_description:"Nucleolar protein 5 (AHRD V1 ***- Q6P364_XENTR); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0051082 NbC24070589g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|0|1|0|89; (*GB) gi|255551613|ref|XP_002516852.1| (e_value=1e-16) pax transcription activation domain interacting protein, putative [Ricinus communis];; (*ITAG) Solyc01g067790.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:69160687-69166508 transcript_region:SL2.40ch01:69160687..69166508+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00036509g0019.1 protein AED:0.03 eAED:0.03 QI:0|0.8|0.66|1|0.8|0.66|6|170|2103; (*GB) gi|225459601|ref|XP_002285869.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=0.0) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00036509g0025.1 protein AED:0.11 eAED:0.11 QI:121|1|1|1|0.69|0.83|24|38|1118; (*GB) gi|359492383|ref|XP_002284508.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248995 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=6e-106) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT1G21730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:7630365-7636247 FORWARD LENGTH=890;; (*ITAG) Solyc06g060140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34470333-34494221 transcript_region:SL2.40ch06:34470333..34494221- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00036509g0018.1 protein AED:0.25 eAED:0.54 QI:0|0.5|0.33|1|0|0.33|3|0|69 NbS00036509g0026.1 protein AED:0.22 eAED:0.24 QI:0|0.5|0.53|0.69|0.66|0.76|13|0|428; (*GB) gi|255558636|ref|XP_002520343.1| (e_value=0.0) replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis];; (*SWP) sp|Q9D0F6|RFC5_MOUSE (e_value=3e-122) Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1;; (*TAIR) AT1G77470.1 (e_value=4e-175) | Symbols: RFC3, RFC5 | replication factor C subunit 3 | chr1:29112194-29114323 REVERSE LENGTH=369;; (*ITAG) Solyc06g060150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34501247-34507135 transcript_region:SL2.40ch06:34501247..34507135+ go_terms:GO:0032183 functional_description:"Replication factor C subunit 3 (AHRD V1 ***- B6TFI5_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183 NbS00036509g0027.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|0.66|1|1|3|0|177; (*GB) gi|356554625|ref|XP_003545645.1| (e_value=3e-51) PREDICTED: aspartic proteinase Asp1-like [Glycine max];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=2e-23) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G77480.2 (e_value=5e-44) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:29114946-29117150 REVERSE LENGTH=432;; (*ITAG) Solyc06g060130.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:34464964-34469756 transcript_region:SL2.40ch06:34464964..34469756+ go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00036509g0017.1 protein AED:0.19 eAED:0.39 QI:79|-1|0|1|-1|0|1|0|92; (*GB) gi|350535843|ref|NP_001234472.1| (e_value=3e-44) xyloglucan endotransglucosylase-hydrolase XTH3 precursor [Solanum lycopersicum];; (*SWP) sp|Q38857|XTH22_ARATH (e_value=8e-40) Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1;; (*TAIR) AT5G57560.1 (e_value=6e-41) | Symbols: TCH4, XTH22 | Xyloglucan endotransglucosylase/hydrolase family protein | chr5:23307296-23308235 REVERSE LENGTH=284;; (*ITAG) Solyc03g093080.2.1 (e_value=1e-47) genomic_reference:SL2.40ch03 gene_region:47714082-47715297 transcript_region:SL2.40ch03:47714082..47715297- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 **** C0IRG8_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00050531g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|376; (*GB) gi|224073472|ref|XP_002304100.1| (e_value=4e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=7e-11) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT1G72670.1 (e_value=4e-72) | Symbols: iqd8 | IQ-domain 8 | chr1:27356898-27358657 REVERSE LENGTH=414;; (*ITAG) Solyc03g121760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63883128-63885625 transcript_region:SL2.40ch03:63883128..63885625- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00050531g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|0|0.33|3|0|210; (*GB) gi|357454585|ref|XP_003597573.1| (e_value=2e-70) R2R3-MYB transcription factor [Medicago truncatula];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=7e-60) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT3G13890.2 (e_value=1e-67) | Symbols: MYB26 | myb domain protein 26 | chr3:4576744-4578027 REVERSE LENGTH=358;; (*ITAG) Solyc03g121740.1.1 (e_value=3e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:63864556-63866340 transcript_region:SL2.40ch03:63864556..63866340- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9LVL0_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00051772g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|255543855|ref|XP_002512990.1| (e_value=2e-22) endo-1,4-beta-glucanase, putative [Ricinus communis];; (*SWP) sp|Q9SVJ4|GUN22_ARATH (e_value=1e-21) Endoglucanase 22 OS=Arabidopsis thaliana GN=GH9B16 PE=2 SV=1;; (*TAIR) AT4G38990.1 (e_value=4e-23) | Symbols: AtGH9B16, GH9B16 | glycosyl hydrolase 9B16 | chr4:18169175-18170949 REVERSE LENGTH=347;; (*ITAG) Solyc01g110340.2.1 (e_value=3e-30) genomic_reference:SL2.40ch01 gene_region:88831044-88837188 transcript_region:SL2.40ch01:88831044..88837188+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00012233g0004.1 protein AED:0.14 eAED:0.16 QI:0|0.84|0.79|1|0.97|0.94|39|0|1784; (*GB) gi|15219766|ref|NP_171954.1| (e_value=0.0) myosin XI A [Arabidopsis thaliana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT1G04600.1 (e_value=0.0) | Symbols: XIA, ATXIA | myosin XI A | chr1:1262123-1272376 FORWARD LENGTH=1730;; (*ITAG) Solyc09g091080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65760237-65779915 transcript_region:SL2.40ch09:65760237..65779915+ go_terms:GO:0042803 functional_description:"Myosin XI-F (AHRD V1 ***- B0CN60_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00032287g0006.1 protein AED:0.08 eAED:0.08 QI:210|0.6|0.33|1|1|1|6|329|376; (*GB) gi|283837099|emb|CBH19894.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=3e-96) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33270.1 (e_value=3e-140) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc08g005420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:313072-316046 transcript_region:SL2.40ch08:313072..316046+ go_terms:GO:0004871 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004871 NbS00032287g0005.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.33|0.5|0.33|3|0|119; (*GB) gi|109289919|gb|AAP45172.2| (e_value=3e-22) hypothetical protein SBB1_14t00021 [Solanum bulbocastanum];; (*TAIR) AT3G13960.1 (e_value=5e-18) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc08g005430.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:317215-320529 transcript_region:SL2.40ch08:317215..320529+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 4 (AHRD V1 **-- Q6ZIK5_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00000295g0014.1 protein AED:0.34 eAED:0.34 QI:198|0.62|0.88|1|0.87|1|9|407|302; (*GB) gi|8570443|gb|AAF76470.1|AC020622_4 (e_value=1e-67) Contains similarity to a hypothetical protein gi|6983878 from Oryza Sativa BAC gb|AP001168 [Arabidopsis thaliana];; (*TAIR) AT1G01920.1 (e_value=9e-33) | Symbols: | SET domain-containing protein | chr1:316204-319507 FORWARD LENGTH=572;; (*ITAG) Solyc01g091860.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:77158275-77165014 transcript_region:SL2.40ch01:77158275..77165014- functional_description:"SET domain-containing protein (AHRD V1 ***- D7KP61_ARALY); contains Interpro domain(s) IPR001214 SET "; NbS00000295g0002.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0.66|1|1|1|3|0|276; (*GB) gi|225453881|ref|XP_002273056.1| (e_value=6e-112) PREDICTED: vacuolar iron transporter 1 [Vitis vinifera];; (*TAIR) AT2G01770.1 (e_value=3e-12) | Symbols: VIT1, ATVIT1 | vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250;; (*ITAG) Solyc01g091850.2.1 (e_value=1e-152) genomic_reference:SL2.40ch01 gene_region:77156850-77158091 transcript_region:SL2.40ch01:77156850..77158091+ functional_description:"Integral membrane protein (AHRD V1 ***- Q22DU5_TETTH); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00000295g0007.1 protein AED:0.09 eAED:0.09 QI:441|1|1|1|0.71|0.75|8|645|179; (*GB) gi|224074825|ref|XP_002304463.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDX3|UTR4_ARATH (e_value=4e-88) UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1;; (*TAIR) AT1G12600.1 (e_value=3e-89) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr1:4286414-4288859 REVERSE LENGTH=349;; (*ITAG) Solyc01g091840.2.1 (e_value=7e-97) genomic_reference:SL2.40ch01 gene_region:77152790-77155787 transcript_region:SL2.40ch01:77152790..77155787+ go_terms:GO:0046964 functional_description:"3&apos-phosphoadenosine 5&apos-phosphosulfate transporter 1 (AHRD V1 **** B2BMP5_CANFA); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0046964 NbS00020954g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|406; (*GB) gi|109727320|gb|ABG45945.1| (e_value=0.0) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-99) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00048489g0003.1 protein AED:0.25 eAED:0.34 QI:0|0.33|0.25|1|0.33|0.25|4|213|223; (*GB) gi|255539871|ref|XP_002511000.1| (e_value=2e-17) hypothetical protein RCOM_1501190 [Ricinus communis];; (*ITAG) Solyc07g015800.1.1 (e_value=1e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00029502g0007.1 protein AED:0.40 eAED:0.44 QI:0|0.25|0|0.8|1|1|5|0|249; (*GB) gi|4097585|gb|AAD09518.1| (e_value=4e-55) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|O81025|P2A03_ARATH (e_value=6e-30) Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1;; (*TAIR) AT1G33970.3 (e_value=2e-36) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349890-12350960 REVERSE LENGTH=276;; (*ITAG) Solyc11g028010.1.1 (e_value=2e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00015394g0005.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.5|1|1|2|0|86 NbS00015394g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.95|0.95|1|0.61|0.68|22|1496|757; (*GB) gi|356565000|ref|XP_003550733.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100782006 [Glycine max];; (*TAIR) AT3G17340.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:5920613-5926846 REVERSE LENGTH=1090;; (*ITAG) Solyc01g057520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:54163130-54174043 transcript_region:SL2.40ch01:54163130..54174043+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGD8 (AHRD V1 *--- Q9LUT8_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00052787g0005.1 protein AED:0.21 eAED:0.21 QI:162|0.90|0.75|1|0.81|0.83|12|0|569; (*GB) gi|296085461|emb|CBI29193.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LPJ4|AB2E_ARATH (e_value=0.0) ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1;; (*TAIR) AT4G19210.1 (e_value=0.0) | Symbols: ATRLI2, RLI2 | RNAse l inhibitor protein 2 | chr4:10501906-10504776 FORWARD LENGTH=605;; (*ITAG) Solyc08g075360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56666411-56671614 transcript_region:SL2.40ch08:56666411..56671614- go_terms:GO:0008428 functional_description:"Zinc import ATP-binding protein ZnuC (AHRD V1 *-*- ZNUC_RICFE); contains Interpro domain(s) IPR013283 ABC transporter, ABCE "; GO:0008428 NbS00002212g0010.1 protein AED:0.21 eAED:0.21 QI:261|0.87|0.77|1|0.62|0.55|9|343|353; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=3e-115) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=2e-106) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc06g053300.2.1 (e_value=2e-134) genomic_reference:SL2.40ch06 gene_region:32513714-32520119 transcript_region:SL2.40ch06:32513714..32520119- go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 *-** B6U4M0_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00052707g0008.1 protein AED:0.25 eAED:0.26 QI:94|1|0.75|1|1|1|4|0|208; (*GB) gi|297741301|emb|CBI32432.3| (e_value=4e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94CL9|KRP7_ARATH (e_value=3e-16) Cyclin-dependent kinase inhibitor 7 OS=Arabidopsis thaliana GN=KRP7 PE=1 SV=2;; (*TAIR) AT1G49620.1 (e_value=3e-17) | Symbols: KRP7, ICN6, ICK5 | Cyclin-dependent kinase inhibitor family protein | chr1:18365692-18366559 REVERSE LENGTH=195;; (*ITAG) Solyc01g108610.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:87630293-87631802 transcript_region:SL2.40ch01:87630293..87631802+ go_terms:GO:0005634 functional_description:"Cyclin-dependent kinase inhibitor 12 (AHRD V1 ***- Q6T2Z2_SOYBN); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0005634 NbS00052707g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.33|0.25|1|1|1|4|0|657; (*GB) gi|46367701|dbj|BAD15363.1| (e_value=0.0) nitrite reductase [Nicotiana tabacum];; (*SWP) sp|P05314|NIR_SPIOL (e_value=0.0) Ferredoxin--nitrite reductase, chloroplastic OS=Spinacia oleracea GN=NIR PE=1 SV=1;; (*TAIR) AT2G15620.1 (e_value=0.0) | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810552-6812666 FORWARD LENGTH=586;; (*ITAG) Solyc01g108630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87640633-87643378 transcript_region:SL2.40ch01:87640633..87643378+ go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76KB0_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region "; GO:0005515 NbS00052707g0006.1 protein AED:0.26 eAED:0.26 QI:4|0.66|0.85|1|1|1|7|182|401; (*GB) gi|225428776|ref|XP_002282055.1| (e_value=6e-165) PREDICTED: uncharacterized protein LOC100245307 [Vitis vinifera];; (*TAIR) AT2G15695.1 (e_value=7e-140) | Symbols: | Protein of unknown function DUF829, transmembrane 53 | chr2:6834194-6836336 REVERSE LENGTH=420;; (*ITAG) Solyc01g108620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87634718-87638577 transcript_region:SL2.40ch01:87634718..87638577+ functional_description:"Os11g0614900 protein (Fragment) (AHRD V1 *-*- Q0IRN0_ORYSJ); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00030477g0013.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0|0.75|0.66|0.5|4|0|426; (*GB) gi|224139950|ref|XP_002323355.1| (e_value=2e-140) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10385.1 (e_value=1e-142) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc04g005850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:542180-545744 transcript_region:SL2.40ch04:542180..545744+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN92_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00030477g0012.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|496; (*GB) gi|224138190|ref|XP_002322752.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=5e-168) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=4e-169) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc04g005840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:538803-541051 transcript_region:SL2.40ch04:538803..541051+ go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00030477g0011.1 protein AED:0.34 eAED:0.34 QI:182|0.87|0.77|1|0.5|0.66|9|1|396; (*GB) gi|77553351|gb|ABA96147.1| (e_value=3e-157) expressed protein [Oryza sativa Japonica Group];; (*SWP) sp|P51281|YCF45_PORPU (e_value=4e-113) Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1;; (*TAIR) AT1G33290.1 (e_value=3e-151) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12074125-12075989 FORWARD LENGTH=379;; (*ITAG) Solyc04g005830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:529102-536289 transcript_region:SL2.40ch04:529102..536289+ go_terms:GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- B5W372_SPIMA); contains Interpro domain(s) IPR003593 ATPase, AAA+ type, core "; GO:0017111 NbS00024423g0003.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|193; (*GB) gi|297745775|emb|CBI15831.3| (e_value=4e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G30395.1 (e_value=7e-33) | Symbols: ATOFP17, OFP17 | ovate family protein 17 | chr2:12954409-12955083 REVERSE LENGTH=195;; (*ITAG) Solyc06g082450.1.1 (e_value=2e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44545426-44546437 transcript_region:SL2.40ch06:44545426..44546437- functional_description:"ATOFP17/OFP17 (AHRD V1 ***- D7LBN3_ARALY)"; NbS00024423g0001.1 protein AED:0.33 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|177; (*GB) gi|255554481|ref|XP_002518279.1| (e_value=4e-34) hypothetical protein RCOM_0815310 [Ricinus communis];; (*TAIR) AT5G58360.1 (e_value=3e-27) | Symbols: ATOFP3, OFP3 | ovate family protein 3 | chr5:23590079-23590969 REVERSE LENGTH=296;; (*ITAG) Solyc06g082460.1.1 (e_value=3e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44548662-44549717 transcript_region:SL2.40ch06:44548662..44549717+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00035182g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|170 NbS00035182g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|147 NbS00012153g0008.1 protein AED:0.06 eAED:0.06 QI:249|0.77|0.6|1|0.66|0.7|10|241|855; (*GB) gi|225432918|ref|XP_002280226.1| (e_value=0.0) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=2e-105) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1;; (*TAIR) AT3G23070.1 (e_value=0.0) | Symbols: ATCFM3A, CFM3A | CRM family member 3A | chr3:8203548-8207243 FORWARD LENGTH=881;; (*ITAG) Solyc09g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64410108-64416669 transcript_region:SL2.40ch09:64410108..64416669+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00012153g0007.1 protein AED:0.06 eAED:0.07 QI:0|0.16|0.14|1|0.83|0.85|7|45|397; (*GB) gi|296085337|emb|CBI29069.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2KHU8|IF2G_BOVIN (e_value=6e-158) Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus GN=EIF2S3 PE=2 SV=1;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc01g066690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67249597-67259592 transcript_region:SL2.40ch01:67249597..67259592+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00039897g0013.1 protein AED:0.28 eAED:0.30 QI:199|0.6|0.66|1|0.4|0.16|6|464|143; (*GB) gi|296083832|emb|CBI24220.3| (e_value=8e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57090.1 (e_value=1e-51) | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170;; (*ITAG) Solyc11g065100.1.1 (e_value=4e-62) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:47499778-47502210 transcript_region:SL2.40ch11:47499778..47502210- go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00039897g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|0.5|1|1|4|491|117; (*GB) gi|255572181|ref|XP_002527030.1| (e_value=4e-36) Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis];; (*SWP) sp|Q8BMW7|NIPA3_MOUSE (e_value=6e-15) Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2;; (*TAIR) AT4G38730.1 (e_value=4e-30) | Symbols: | Protein of unknown function (DUF803) | chr4:18080484-18082305 REVERSE LENGTH=326;; (*ITAG) Solyc11g065090.1.1 (e_value=4e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47473695-47479479 transcript_region:SL2.40ch11:47473695..47479479+ go_terms:GO:0005665 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005665 NbS00039897g0011.1 protein AED:0.18 eAED:0.18 QI:153|1|0.87|1|0.85|0.87|8|322|540; (*GB) gi|359479221|ref|XP_002279963.2| (e_value=2e-101) PREDICTED: uncharacterized protein LOC100265339 [Vitis vinifera];; (*TAIR) AT4G03250.1 (e_value=4e-62) | Symbols: | Homeodomain-like superfamily protein | chr4:1425050-1427744 FORWARD LENGTH=507;; (*ITAG) Solyc11g065110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47513848-47521993 transcript_region:SL2.40ch11:47513848..47521993+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *-*- D6BV21_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00005163g0007.1 protein AED:0.16 eAED:0.16 QI:161|0.86|0.75|1|0.8|0.75|16|241|427; (*GB) gi|359473913|ref|XP_002270595.2| (e_value=0.0) PREDICTED: DNA primase small subunit-like [Vitis vinifera];; (*SWP) sp|P20664|PRI1_MOUSE (e_value=2e-100) DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1;; (*TAIR) AT5G41880.1 (e_value=0.0) | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16761071-16764074 FORWARD LENGTH=451;; (*ITAG) Solyc08g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62213441-62219493 transcript_region:SL2.40ch08:62213441..62219493+ go_terms:GO:0003896 functional_description:"DNA primase (AHRD V1 **** B6T4S3_MAIZE); contains Interpro domain(s) IPR014052 DNA primase, small subunit, eukaryotic and archaeal "; GO:0003896 NbS00005163g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|13430182|gb|AAK25758.1|AF334838_1 (e_value=7e-76) ribosomal protein L17 [Castanea sativa];; (*SWP) sp|P49690|RL23_ARATH (e_value=2e-77) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=2e-78) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=2e-78) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00005163g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|356495715|ref|XP_003516719.1| (e_value=2e-36) PREDICTED: ethylene-responsive transcription factor ERF061-like [Glycine max];; (*SWP) sp|Q9C7W2|ERF61_ARATH (e_value=2e-23) Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1;; (*TAIR) AT1G64380.1 (e_value=1e-24) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:23890981-23891988 REVERSE LENGTH=335;; (*ITAG) Solyc08g082210.2.1 (e_value=7e-30) genomic_reference:SL2.40ch08 gene_region:62221339-62222646 transcript_region:SL2.40ch08:62221339..62222646- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00021104g0015.1 protein AED:0.21 eAED:0.25 QI:0|0.28|0.12|1|0.42|0.37|8|0|578; (*GB) gi|225435259|ref|XP_002282192.1| (e_value=8e-167) PREDICTED: uncharacterized protein LOC100256992 [Vitis vinifera];; (*TAIR) AT1G07970.1 (e_value=1e-143) | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693;; (*ITAG) Solyc11g069170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50878904-50883953 transcript_region:SL2.40ch11:50878904..50883953- functional_description:"Transmembrane protein 209 (AHRD V1 *-*- TM209_MOUSE); contains Interpro domain(s) IPR019176 Cytochrome B561-related, N-terminal "; NbS00021104g0016.1 protein AED:0.21 eAED:0.21 QI:77|0.73|0.68|1|0.73|0.68|16|0|862; (*GB) gi|225435251|ref|XP_002284945.1| (e_value=0.0) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=0.0) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.5 (e_value=0.0) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300792 FORWARD LENGTH=885;; (*ITAG) Solyc11g069160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00027735g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|633; (*GB) gi|123650|sp|P09189.1|HSP7C_PETHY (e_value=0.0) RecName: Full=Heat shock cognate 70 kDa protein;; (*SWP) sp|P09189|HSP7C_PETHY (e_value=0.0) Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc11g066100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48856641-48858939 transcript_region:SL2.40ch11:48856641..48858939- go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00027735g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|255573625|ref|XP_002527735.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc11g066090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48854232-48855767 transcript_region:SL2.40ch11:48854232..48855767+ go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0006508 NbS00000459g0004.1 protein AED:0.12 eAED:0.12 QI:192|1|1|1|0.9|0.81|11|430|400; (*GB) gi|225431100|ref|XP_002264558.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 [Vitis vinifera];; (*SWP) sp|P55034|PSMD4_ARATH (e_value=6e-148) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1;; (*TAIR) AT4G38630.1 (e_value=5e-149) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386;; (*ITAG) Solyc02g083710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00000459g0005.1 protein AED:0.42 eAED:0.54 QI:0|0.75|0.6|1|0|0.2|5|0|216; (*GB) gi|359476820|ref|XP_002265520.2| (e_value=1e-59) PREDICTED: MLO17 protein [Vitis vinifera];; (*SWP) sp|O23693|MLO4_ARATH (e_value=3e-37) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=2e-38) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc02g083720.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:41596474-41602413 transcript_region:SL2.40ch02:41596474..41602413- go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00000351g0008.1 protein AED:0.00 eAED:0.00 QI:372|1|1|1|0.5|0.33|3|331|216; (*GB) gi|297740001|emb|CBI30183.3| (e_value=4e-114) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G27930.1 (e_value=2e-65) | Symbols: | PLATZ transcription factor family protein | chr2:11892369-11893488 FORWARD LENGTH=189;; (*ITAG) Solyc10g085800.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64207015-64209086 transcript_region:SL2.40ch10:64207015..64209086- functional_description:"Zinc-binding family protein (AHRD V1 **-- D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00000351g0009.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|262; (*GB) gi|224068865|ref|XP_002326219.1| (e_value=3e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SCP6|U73D1_ARATH (e_value=2e-92) UDP-glycosyltransferase 73D1 OS=Arabidopsis thaliana GN=UGT73D1 PE=3 SV=1;; (*TAIR) AT3G53150.1 (e_value=2e-93) | Symbols: UGT73D1 | UDP-glucosyl transferase 73D1 | chr3:19697736-19699259 REVERSE LENGTH=507;; (*ITAG) Solyc10g085860.1.1 (e_value=4e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64231174-64232658 transcript_region:SL2.40ch10:64231174..64232658- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00043604g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|0.6|0.66|6|0|306; (*GB) gi|224113935|ref|XP_002316618.1| (e_value=1e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5S8|CRK5_ARATH (e_value=1e-93) Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=CRK5 PE=1 SV=1;; (*TAIR) AT4G23130.1 (e_value=9e-95) | Symbols: CRK5, RLK6 | cysteine-rich RLK (RECEPTOR-like protein kinase) 5 | chr4:12117688-12120134 REVERSE LENGTH=659;; (*ITAG) Solyc12g087920.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61872727-61876078 transcript_region:SL2.40ch12:61872727..61876078- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00020881g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|1|1|4|0|370; (*GB) gi|359482322|ref|XP_002277233.2| (e_value=8e-108) PREDICTED: uncharacterized protein LOC100249368 [Vitis vinifera];; (*TAIR) AT3G52910.1 (e_value=8e-60) | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 | chr3:19616177-19618268 REVERSE LENGTH=380;; (*ITAG) Solyc10g083510.1.1 (e_value=5e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62623196-62627098 transcript_region:SL2.40ch10:62623196..62627098- go_terms:GO:0005634 functional_description:"Growth-regulating factor 2 (AHRD V1 **-- Q6AWY7_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00030282g0007.1 protein AED:0.46 eAED:0.47 QI:0|1|0.5|1|1|1|2|0|109; (*GB) gi|76161010|gb|ABA40468.1| (e_value=1e-51) Drm3-like protein [Solanum tuberosum];; (*TAIR) AT1G56220.4 (e_value=2e-29) | Symbols: | Dormancy/auxin associated family protein | chr1:21043414-21044381 FORWARD LENGTH=109;; (*ITAG) Solyc01g099840.2.1 (e_value=5e-54) genomic_reference:SL2.40ch01 gene_region:81745463-81747550 transcript_region:SL2.40ch01:81745463..81747550+ functional_description:"Auxin-repressed protein (AHRD V1 ***- B4FA62_MAIZE); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00030282g0008.1 protein AED:0.02 eAED:0.02 QI:293|1|1|1|0.66|1|4|421|315; (*GB) gi|15230010|ref|NP_187209.1| (e_value=0.0) serine/threonine-protein phosphatase PP1 isozyme 9 [Arabidopsis thaliana];; (*SWP) sp|Q9M9W3|PP19_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1;; (*TAIR) AT3G05580.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:1618216-1619850 REVERSE LENGTH=318;; (*ITAG) Solyc01g099860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81754501-81757239 transcript_region:SL2.40ch01:81754501..81757239- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q84T16_PHAAT); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00053871g0005.1 protein AED:0.70 eAED:0.70 QI:1|0|0|0.25|0.66|0.75|4|0|188; (*GB) gi|255564194|ref|XP_002523094.1| (e_value=1e-79) gamma-tubulin complex component, putative [Ricinus communis];; (*SWP) sp|Q9SC88|GCP4_MEDTR (e_value=1e-71) Gamma-tubulin complex component 4 homolog OS=Medicago truncatula GN=85P PE=2 SV=1;; (*TAIR) AT3G53760.1 (e_value=7e-70) | Symbols: GCP4, ATGCP4 | GAMMA-TUBULIN COMPLEX PROTEIN 4 | chr3:19918182-19922264 REVERSE LENGTH=745;; (*ITAG) Solyc09g075190.2.1 (e_value=2e-108) genomic_reference:SL2.40ch09 gene_region:62458603-62469576 transcript_region:SL2.40ch09:62458603..62469576- go_terms:GO:0015631 functional_description:"Gamma-tubulin complex component 4 (Predicted) (AHRD V1 **** B2KIP3_RHIFE); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0015631 NbS00006071g0009.1 protein AED:0.05 eAED:0.06 QI:0|1|0.84|1|0.66|0.69|13|0|553; (*GB) gi|359484820|ref|XP_002271781.2| (e_value=4e-142) PREDICTED: putative clathrin assembly protein At5g35200-like [Vitis vinifera];; (*SWP) sp|Q9LHS0|CAP10_ARATH (e_value=5e-117) Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1;; (*TAIR) AT5G35200.1 (e_value=4e-118) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr5:13462463-13465581 REVERSE LENGTH=544;; (*ITAG) Solyc12g010530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3524162-3527442 transcript_region:SL2.40ch12:3524162..3527442+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TW95_MAIZE); contains Interpro domain(s) IPR011417 ANTH "; GO:0030118,GO:0005543 NbS00006071g0010.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.33|3|0|432; (*GB) gi|255574623|ref|XP_002528222.1| (e_value=0.0) UDP-glucuronate 5-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9M0B6|GAE1_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1;; (*TAIR) AT4G30440.1 (e_value=0.0) | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 | chr4:14881976-14883265 REVERSE LENGTH=429;; (*ITAG) Solyc12g010540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3531522-3532820 transcript_region:SL2.40ch12:3531522..3532820- go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00047427g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|517|219; (*GB) gi|224082162|ref|XP_002306588.1| (e_value=6e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78020.1 (e_value=6e-36) | Symbols: | Protein of unknown function (DUF581) | chr1:29338787-29339491 FORWARD LENGTH=162;; (*ITAG) Solyc04g072780.2.1 (e_value=3e-87) genomic_reference:SL2.40ch04 gene_region:57350803-57351888 transcript_region:SL2.40ch04:57350803..57351888+ functional_description:"Genomic DNA chromosome 5 TAC clone K14A3 (AHRD V1 *--- Q9FGQ9_ARATH); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbC24187568g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0|2|0|81; (*GB) gi|147778297|emb|CAN60817.1| (e_value=1e-40) hypothetical protein VITISV_033220 [Vitis vinifera];; (*TAIR) AT3G05480.2 (e_value=6e-33) | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control protein family | chr3:1585383-1588238 FORWARD LENGTH=420;; (*ITAG) Solyc10g044780.1.1 (e_value=7e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23228575-23235285 transcript_region:SL2.40ch10:23228575..23235285- go_terms:GO:0006281 functional_description:"Cell cycle checkpoint control protein family (AHRD V1 **-- D7L3V1_ARALY); contains Interpro domain(s) IPR007268 Rad9 "; GO:0006281 NbS00044713g0003.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|194; (*GB) gi|225426204|ref|XP_002280000.1| (e_value=5e-47) PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Vitis vinifera];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-18) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G41350.1 (e_value=6e-43) | Symbols: | RING/U-box superfamily protein | chr5:16542026-16543092 REVERSE LENGTH=212;; (*ITAG) Solyc08g081300.2.1 (e_value=3e-100) genomic_reference:SL2.40ch08 gene_region:61530472-61532584 transcript_region:SL2.40ch08:61530472..61532584- go_terms:GO:0008270 functional_description:"Ring finger protein 126 (AHRD V1 *-*- Q28DW8_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001880g0003.1 protein AED:0.00 eAED:0.00 QI:122|0.5|0.66|1|0|0.33|3|1610|525; (*GB) gi|225451679|ref|XP_002276467.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Vitis vinifera];; (*SWP) sp|Q3EBD3|RH41_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1;; (*TAIR) AT3G02065.3 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:359136-360734 FORWARD LENGTH=505;; (*ITAG) Solyc01g006340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:915539-918894 transcript_region:SL2.40ch01:915539..918894+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00001880g0007.1 protein AED:0.18 eAED:0.18 QI:83|1|1|1|0.9|1|11|331|398; (*GB) gi|224053000|ref|XP_002297657.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LAP6|PAP12_ARATH (e_value=3e-175) Probable plastid-lipid-associated protein 12, chloroplastic OS=Arabidopsis thaliana GN=PAP12 PE=2 SV=1;; (*TAIR) AT1G51110.1 (e_value=2e-176) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr1:18935380-18937484 FORWARD LENGTH=409;; (*ITAG) Solyc01g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:909572-913930 transcript_region:SL2.40ch01:909572..913930+ go_terms:GO:0009507 functional_description:"PAP fibrillin family protein (AHRD V1 *-*- B7KDB3_CYAP7); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00001880g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|38489222|gb|AAR21296.1| (e_value=2e-52) NDR1-like protein [Nicotiana benthamiana];; (*SWP) sp|O48915|NDR1_ARATH (e_value=6e-13) Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1;; (*TAIR) AT3G20600.1 (e_value=5e-14) | Symbols: NDR1 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:7194877-7195536 FORWARD LENGTH=219;; (*ITAG) Solyc01g006320.2.1 (e_value=7e-59) genomic_reference:SL2.40ch01 gene_region:903793-904590 transcript_region:SL2.40ch01:903793..904590+ go_terms:GO:0005515,GO:0004871 functional_description:"Non-race specific disease resistance protein 1-like protein b (AHRD V1 ***- D2CFI3_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; GO:0005515,GO:0004871 NbS00030346g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|284; (*GB) gi|350534468|ref|NP_001234398.1| (e_value=6e-149) ripening regulated protein DDTFR18 [Solanum lycopersicum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-57) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=7e-106) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc04g074840.2.1 (e_value=3e-151) genomic_reference:SL2.40ch04 gene_region:58343145-58346840 transcript_region:SL2.40ch04:58343145..58346840- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00005542g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|330318591|gb|AEC10963.1| (e_value=6e-78) 40S ribosomal protein s17 [Camellia sinensis];; (*SWP) sp|P49215|RS17_SOLLC (e_value=4e-78) 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3;; (*TAIR) AT3G10610.1 (e_value=1e-74) | Symbols: | Ribosomal S17 family protein | chr3:3319459-3319881 FORWARD LENGTH=140;; (*ITAG) Solyc05g055230.1.1 (e_value=3e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:64111952-64112386 transcript_region:SL2.40ch05:64111952..64112386- go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S17-like protein (AHRD V1 ***- Q3HRX4_SOLTU); contains Interpro domain(s) IPR018273 Ribosomal protein S17e, conserved site "; GO:0003735,GO:0003723 NbS00005542g0008.1 protein AED:0.28 eAED:0.28 QI:59|1|1|1|0.71|0.75|8|322|419; (*GB) gi|225440757|ref|XP_002281218.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261287 [Vitis vinifera];; (*SWP) sp|Q6DDZ9|K1609_XENLA (e_value=1e-36) TLD domain-containing protein KIAA1609 homolog OS=Xenopus laevis PE=2 SV=1;; (*TAIR) AT5G06260.1 (e_value=0.0) | Symbols: | TLD-domain containing nucleolar protein | chr5:1902755-1904835 REVERSE LENGTH=424;; (*ITAG) Solyc10g083160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62348194-62359524 transcript_region:SL2.40ch10:62348194..62359524+ go_terms:GO:0005509 functional_description:"Oxidation resistance 1 (AHRD V1 *--- D3HIS6_HUMAN); contains Interpro domain(s) IPR006571 TLDc "; GO:0005509 NbS00002068g0005.1 protein AED:0.04 eAED:0.04 QI:25|0.87|0.66|1|1|1|9|455|685; (*GB) gi|224139018|ref|XP_002326747.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|P37707|B2_DAUCA (e_value=4e-18) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G61910.2 (e_value=2e-42) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24861091-24863729 REVERSE LENGTH=738;; (*ITAG) Solyc06g068850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39057724-39063544 transcript_region:SL2.40ch06:39057724..39063544- functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00007194g0002.1 protein AED:0.34 eAED:0.34 QI:0|0.9|0.90|0.90|0.9|0.81|11|591|468; (*GB) gi|1708059|sp|P80461.1|GSHRP_TOBAC (e_value=0.0) RecName: Full=Glutathione reductase, chloroplastic; Short=GR; Short=GRase; Flags: Precursor;; (*SWP) sp|P80461|GSHRP_TOBAC (e_value=0.0) Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1;; (*TAIR) AT3G54660.1 (e_value=0.0) | Symbols: GR, EMB2360, ATGR2 | glutathione reductase | chr3:20230356-20233100 REVERSE LENGTH=565;; (*ITAG) Solyc09g065900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59792768-59797957 transcript_region:SL2.40ch09:59792768..59797957- go_terms:GO:0005524,GO:0005507 functional_description:"Glutathione reductase (AHRD V1 ***- B9IED0_POPTR); contains Interpro domain(s) IPR006324 Glutathione reductase, plant "; GO:0005524,GO:0005507 NbS00007194g0001.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|1708059|sp|P80461.1|GSHRP_TOBAC (e_value=1e-62) RecName: Full=Glutathione reductase, chloroplastic; Short=GR; Short=GRase; Flags: Precursor;; (*SWP) sp|P80461|GSHRP_TOBAC (e_value=3e-64) Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1;; (*TAIR) AT3G54660.1 (e_value=2e-28) | Symbols: GR, EMB2360, ATGR2 | glutathione reductase | chr3:20230356-20233100 REVERSE LENGTH=565;; (*ITAG) Solyc09g065900.2.1 (e_value=2e-52) genomic_reference:SL2.40ch09 gene_region:59792768-59797957 transcript_region:SL2.40ch09:59792768..59797957- go_terms:GO:0005524,GO:0005507 functional_description:"Glutathione reductase (AHRD V1 ***- B9IED0_POPTR); contains Interpro domain(s) IPR006324 Glutathione reductase, plant "; GO:0005524,GO:0005507 NbS00007194g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.66|0|1|0.66|0.75|4|0|596; (*GB) gi|224066305|ref|XP_002302074.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBR6|PLA16_ARATH (e_value=0.0) Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2;; (*TAIR) AT2G30550.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:13014884-13017005 FORWARD LENGTH=529;; (*ITAG) Solyc09g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59781066-59784409 transcript_region:SL2.40ch09:59781066..59784409+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00007194g0113.1 protein AED:0.12 eAED:0.12 QI:0|1|0.90|1|1|1|11|187|626 NbS00007194g0117.1 protein AED:0.24 eAED:0.24 QI:196|0.90|0.83|1|0.72|0.58|12|323|416 NbS00018055g0009.1 protein AED:0.25 eAED:0.25 QI:154|1|0.93|1|1|1|15|303|504; (*GB) gi|375155305|gb|AFA37976.1| (e_value=0.0) betaine aldehyde dehydrogenase [Solanum torvum];; (*SWP) sp|P17202|BADH_SPIOL (e_value=0.0) Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT1G74920.1 (e_value=0.0) | Symbols: ALDH10A8 | aldehyde dehydrogenase 10A8 | chr1:28139175-28142573 REVERSE LENGTH=501;; (*ITAG) Solyc03g113800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57894787-57902443 transcript_region:SL2.40ch03:57894787..57902443- go_terms:GO:0004029 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00018055g0008.1 protein AED:0.27 eAED:0.27 QI:290|0.92|0.85|1|0.92|0.78|14|97|456; (*GB) gi|224135729|ref|XP_002322146.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7SXP8|GMPAB_DANRE (e_value=6e-87) Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1;; (*TAIR) AT1G74910.2 (e_value=0.0) | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28135770-28138456 REVERSE LENGTH=415;; (*ITAG) Solyc03g113790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57888358-57893883 transcript_region:SL2.40ch03:57888358..57893883- go_terms:GO:0051015 functional_description:"Mannose-1-phosphate guanyltransferase (AHRD V1 ***- B6TBA0_MAIZE); contains Interpro domain(s) IPR005835 Nucleotidyl transferase "; GO:0051015 NbS00018055g0010.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|154; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00014345g0007.1 protein AED:0.10 eAED:0.10 QI:698|0.5|0.61|0.76|0.75|0.76|13|0|1156; (*GB) gi|359472595|ref|XP_002281257.2| (e_value=0.0) PREDICTED: nuclear pore complex protein Nup155-like [Vitis vinifera];; (*SWP) sp|Q99P88|NU155_MOUSE (e_value=7e-23) Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2 SV=1;; (*TAIR) AT1G14850.1 (e_value=0.0) | Symbols: NUP155 | nucleoporin 155 | chr1:5116921-5123259 REVERSE LENGTH=1464;; (*ITAG) Solyc07g008160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2866014-2881660 transcript_region:SL2.40ch07:2866014..2881660+ go_terms:GO:0005487 functional_description:"Nuclear pore complex protein Nup155 (AHRD V1 *--- B0W0E9_CULQU); contains Interpro domain(s) IPR004870 Nucleoporin, non-repetitive/WGA-negative "; GO:0005487 NbS00016934g0003.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.33|1|1|3|0|114; (*GB) gi|54261828|gb|AAV31178.1| (e_value=4e-15) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00016934g0009.1 protein AED:0.23 eAED:0.23 QI:134|1|1|1|1|1|3|186|278; (*GB) gi|23476279|gb|AAN28270.1| (e_value=1e-96) myb-like transcription factor 1 [Gossypium hirsutum];; (*SWP) sp|P81395|MYB30_ANTMA (e_value=1e-96) Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=3e-85) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc06g065100.2.1 (e_value=3e-108) genomic_reference:SL2.40ch06 gene_region:36996666-36998716 transcript_region:SL2.40ch06:36996666..36998716+ go_terms:GO:0003700 functional_description:"Myb-like transcription factor 1 (AHRD V1 **** Q8H271_GOSHI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00016934g0010.1 protein AED:0.08 eAED:0.18 QI:0|0|0|1|0|0|2|0|109; (*ITAG) Solyc06g008150.2.1 (e_value=2e-21) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00025534g0011.1 protein AED:0.14 eAED:0.14 QI:78|1|1|1|0.8|0.81|11|278|574; (*GB) gi|225439191|ref|XP_002269447.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253507 [Vitis vinifera];; (*TAIR) AT5G35220.1 (e_value=0.0) | Symbols: EGY1 | Peptidase M50 family protein | chr5:13484606-13487546 REVERSE LENGTH=548;; (*ITAG) Solyc10g081470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61851435-61858478 transcript_region:SL2.40ch10:61851435..61858478- go_terms:GO:0006508 functional_description:"Peptidase M50 family protein (AHRD V1 ***- C1FJH6_9CHLO); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00025534g0014.1 protein AED:0.37 eAED:0.37 QI:274|1|0.75|1|0.66|0.75|4|0|178; (*GB) gi|357115286|ref|XP_003559421.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100824850 [Brachypodium distachyon];; (*TAIR) AT5G37480.1 (e_value=2e-27) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:14884477-14885517 REVERSE LENGTH=156;; (*ITAG) Solyc10g081480.1.1 (e_value=3e-75) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61859560-61862831 transcript_region:SL2.40ch10:61859560..61862831- functional_description:"Genomic DNA chromosome 5 P1 clone MPA22 (AHRD V1 ***- Q9FGI8_ARATH)"; NbS00025534g0012.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|539; (*GB) gi|255090918|gb|ACU00619.1| (e_value=0.0) penetration and arbuscule morphogenesis protein [Petunia x hybrida];; (*SWP) sp|Q4UMH6|Y381_RICFE (e_value=3e-44) Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1;; (*TAIR) AT5G13530.2 (e_value=5e-30) | Symbols: KEG | protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1624;; (*ITAG) Solyc10g081500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61878337-61880805 transcript_region:SL2.40ch10:61878337..61880805+ go_terms:GO:0005198 functional_description:"Ankyrin repeat protein (AHRD V1 ***- A1DAS1_NEOFI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005198 NbS00025534g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|289; (*GB) gi|225439143|ref|XP_002271738.1| (e_value=4e-104) PREDICTED: myb-related protein 306 [Vitis vinifera];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=1e-80) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT1G08810.1 (e_value=3e-97) | Symbols: MYB60, AtMYB60 | myb domain protein 60 | chr1:2819279-2820329 REVERSE LENGTH=280;; (*ITAG) Solyc10g081490.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61866879-61868274 transcript_region:SL2.40ch10:61866879..61868274+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q8GYP5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00030135g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|224071307|ref|XP_002303396.1| (e_value=7e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7ZV90|PIF1_DANRE (e_value=1e-97) ATP-dependent DNA helicase PIF1 OS=Danio rerio GN=pif1 PE=2 SV=1;; (*ITAG) Solyc07g055900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:61121424-61122920 transcript_region:SL2.40ch07:61121424..61122920- go_terms:GO:0043141 functional_description:"ATP-dependent DNA helicase PIF1 (AHRD V1 **-* B2WAE6_PYRTR); contains Interpro domain(s) IPR003714 PhoH-like protein "; GO:0043141 NbS00030135g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.66|1|1|0.66|3|0|327; (*GB) gi|296084007|emb|CBI24395.3| (e_value=2e-24) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g071690.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52176483-52180827 transcript_region:SL2.40ch11:52176483..52180827- go_terms:GO:0008270 functional_description:"Cellular nucleic acid binding protein (AHRD V1 *--- Q5QJQ9_MOUSE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00022075g0009.1 protein AED:0.09 eAED:0.27 QI:0|0.16|0|1|0|0|7|0|723; (*GB) gi|559237|gb|AAA98492.1| (e_value=4e-30) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=3e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00022075g0007.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|5|0|613; (*GB) gi|559237|gb|AAA98492.1| (e_value=1e-16) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00010823g0009.1 protein AED:0.27 eAED:0.27 QI:146|1|0.5|1|1|1|2|0|290; (*GB) gi|255558542|ref|XP_002520296.1| (e_value=9e-117) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q6DBN1|Y4845_ARATH (e_value=1e-107) BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1;; (*TAIR) AT4G08455.1 (e_value=9e-109) | Symbols: | BTB/POZ domain-containing protein | chr4:5375891-5376922 FORWARD LENGTH=243;; (*ITAG) Solyc02g032510.2.1 (e_value=7e-151) genomic_reference:SL2.40ch02 gene_region:19242941-19247560 transcript_region:SL2.40ch02:19242941..19247560- go_terms:GO:0005515 functional_description:"Kelch-like protein (AHRD V1 ***- A7XCS9_9POXV); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00010823g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|1|0.33|0.25|4|0|394; (*GB) gi|359483371|ref|XP_002274027.2| (e_value=3e-168) PREDICTED: protein TRANSPARENT TESTA 12 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-98) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=1e-157) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g032660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:19624432-19630913 transcript_region:SL2.40ch02:19624432..19630913- go_terms:GO:0015559 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q10HY1_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00010823g0002.1 protein AED:0.26 eAED:0.27 QI:323|0|0.5|1|0|0.5|2|0|183; (*GB) gi|225452536|ref|XP_002279925.1| (e_value=5e-95) PREDICTED: uncharacterized protein LOC100249281 isoform 1 [Vitis vinifera];; (*TAIR) AT5G40190.1 (e_value=1e-75) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr5:16069298-16069849 REVERSE LENGTH=183;; (*ITAG) Solyc02g081950.2.1 (e_value=8e-102) genomic_reference:SL2.40ch02 gene_region:40287312-40288823 transcript_region:SL2.40ch02:40287312..40288823+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7MJB3_ARALY); contains Interpro domain(s) IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase "; GO:0005516 NbC25325964g0002.1 protein AED:0.37 eAED:0.37 QI:30|-1|0|1|-1|0|1|0|72; (*GB) gi|374095611|gb|AEY85033.1| (e_value=6e-40) xanthine dehydrogenase [Camellia sinensis];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=3e-39) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=2e-40) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=7e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00004142g0014.1 protein AED:0.05 eAED:0.06 QI:0|0.6|0.16|0.83|0.8|0.83|6|0|744; (*GB) gi|224065982|ref|XP_002301992.1| (e_value=1e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXI5|IQD32_ARATH (e_value=3e-62) Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3;; (*TAIR) AT1G19870.1 (e_value=3e-63) | Symbols: iqd32 | IQ-domain 32 | chr1:6895400-6898539 REVERSE LENGTH=794;; (*ITAG) Solyc04g081210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62803374-62809165 transcript_region:SL2.40ch04:62803374..62809165+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein IQ (AHRD V1 *--* A8CF59_BRACM); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00004142g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|180; (*GB) gi|255538892|ref|XP_002510511.1| (e_value=8e-45) Auxin-induced protein 6B, putative [Ricinus communis];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=8e-16) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34750.2 (e_value=1e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16577566-16578018 FORWARD LENGTH=150;; (*ITAG) Solyc04g081250.1.1 (e_value=7e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:62854012-62854461 transcript_region:SL2.40ch04:62854012..62854461+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *-*- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00004142g0015.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.71|1|0.83|0.85|7|0|257; (*GB) gi|225458034|ref|XP_002277373.1| (e_value=1e-82) PREDICTED: uncharacterized protein LOC100264366 [Vitis vinifera];; (*TAIR) AT1G75670.2 (e_value=3e-72) | Symbols: | DNA-directed RNA polymerases | chr1:28415378-28416505 REVERSE LENGTH=196;; (*ITAG) Solyc05g054140.2.1 (e_value=7e-125) genomic_reference:SL2.40ch05 gene_region:63243125-63246714 transcript_region:SL2.40ch05:63243125..63246714+ go_terms:GO:0006350 functional_description:"Nucleic acid-binding OB-fold (AHRD V1 ***- A2Q5X5_MEDTR); contains Interpro domain(s) IPR005576 RNA polymerase Rpb7, N-terminal "; GO:0006350 NbS00004142g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|27450532|gb|AAO14627.1|AF467900_4 (e_value=0.0) hypothetical protein [Prunus persica];; (*TAIR) AT3G27230.1 (e_value=2e-179) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:10054224-10055456 FORWARD LENGTH=410;; (*ITAG) Solyc11g010580.2.1 (e_value=6e-173) genomic_reference:SL2.40ch11 gene_region:3652323-3654056 transcript_region:SL2.40ch11:3652323..3654056+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048777g0006.1 protein AED:0.08 eAED:0.11 QI:0|1|0.77|1|0.87|1|9|0|1031; (*GB) gi|296083697|emb|CBI23686.3| (e_value=2e-144) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q24562|U2AF2_DROME (e_value=1e-29) Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=2 SV=1;; (*TAIR) AT2G33435.1 (e_value=8e-46) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14166037-14169492 FORWARD LENGTH=979;; (*ITAG) Solyc09g090420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65285691-65295560 transcript_region:SL2.40ch09:65285691..65295560- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor u2af large subunit (AHRD V1 *-*- Q17H60_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00048777g0002.1 protein AED:0.28 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|225445484|ref|XP_002282063.1| (e_value=1e-125) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FIF7|PP435_ARATH (e_value=1e-66) Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1;; (*TAIR) AT5G59200.1 (e_value=1e-67) | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=544;; (*ITAG) Solyc09g090440.1.1 (e_value=3e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65305130-65306850 transcript_region:SL2.40ch09:65305130..65306850+ go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00048777g0007.1 protein AED:0.48 eAED:0.49 QI:0|0|0|1|0|0|2|0|167; (*GB) gi|225445484|ref|XP_002282063.1| (e_value=1e-42) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=2e-24) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=2e-25) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc09g090440.1.1 (e_value=4e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65305130-65306850 transcript_region:SL2.40ch09:65305130..65306850+ go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00012026g0004.1 protein AED:0.03 eAED:0.04 QI:0|0.87|0.77|1|1|1|9|0|410; (*GB) gi|356543847|ref|XP_003540371.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 2-like [Glycine max];; (*SWP) sp|P98205|ALA2_ARATH (e_value=0.0) Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1;; (*TAIR) AT5G44240.2 (e_value=0.0) | Symbols: ALA2 | aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107;; (*ITAG) Solyc11g017170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7954305-7991478 transcript_region:SL2.40ch11:7954305..7991478+ go_terms:GO:0005576,GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium transporting ATPase (AHRD V1 ***- A8N6A2_COPC7); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0005576,GO:0016020,GO:0008152,GO:0016021 NbS00025135g0005.1 protein AED:0.33 eAED:0.62 QI:0|0|0|1|1|1|2|0|142; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-22) hypothetical protein [Nicotiana tabacum]; NbS00025135g0004.1 protein AED:0.35 eAED:0.60 QI:26|0|0|1|0|0|2|0|120; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-17) hypothetical protein [Nicotiana tabacum]; NbS00025135g0108.1 protein AED:0.01 eAED:0.01 QI:293|1|1|1|1|1|2|188|105 NbS00025135g0101.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|1|1|1|5|34|811 NbS00025135g0109.1 protein AED:0.38 eAED:0.40 QI:0|0.33|0.25|0.75|1|1|4|445|91 NbS00054223g0007.1 protein AED:0.32 eAED:0.32 QI:9|1|0.83|1|0.8|0.5|6|392|191; (*GB) gi|357509957|ref|XP_003625267.1| (e_value=3e-109) Nudix hydrolase [Medicago truncatula];; (*SWP) sp|P93740|NUD23_ARATH (e_value=1e-105) Nudix hydrolase 23, chloroplastic OS=Arabidopsis thaliana GN=NUDT23 PE=1 SV=2;; (*TAIR) AT2G42070.1 (e_value=1e-106) | Symbols: ATNUDT23, ATNUDX23, NUDX23 | nudix hydrolase homolog 23 | chr2:17549669-17551066 REVERSE LENGTH=280;; (*ITAG) Solyc03g062830.2.1 (e_value=3e-124) genomic_reference:SL2.40ch03 gene_region:29696132-29708002 transcript_region:SL2.40ch03:29696132..29708002- go_terms:GO:0047884 functional_description:"Nudix hydrolase 23 (AHRD V1 *-*- B6TED1_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0047884 NbS00036450g0003.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|262; (*GB) gi|224102167|ref|XP_002334203.1| (e_value=8e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|O80494|P2B15_ARATH (e_value=1e-54) F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2;; (*TAIR) AT1G09155.1 (e_value=8e-56) | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B15 | chr1:2949831-2950842 REVERSE LENGTH=289;; (*ITAG) Solyc01g100000.2.1 (e_value=1e-110) genomic_reference:SL2.40ch01 gene_region:81846092-81847461 transcript_region:SL2.40ch01:81846092..81847461- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00039282g0004.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|225459567|ref|XP_002285859.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100267707 [Vitis vinifera];; (*TAIR) AT1G21790.1 (e_value=7e-38) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:7654357-7655691 FORWARD LENGTH=288;; (*ITAG) Solyc01g079770.2.1 (e_value=3e-44) genomic_reference:SL2.40ch01 gene_region:71425485-71426806 transcript_region:SL2.40ch01:71425485..71426806+ go_terms:GO:0006508,GO:0016021 functional_description:"TLC domain-containing protein 2 (AHRD V1 *-*- TLCD2_DANRE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0006508,GO:0016021 NbS00039282g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|351728015|ref|NP_001238716.1| (e_value=5e-77) uncharacterized protein LOC100306685 precursor [Glycine max];; (*SWP) sp|Q84MC0|UGPI4_ARATH (e_value=2e-72) Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1;; (*TAIR) AT3G06035.1 (e_value=2e-73) | Symbols: | Glycoprotein membrane precursor GPI-anchored | chr3:1823172-1824110 REVERSE LENGTH=200;; (*ITAG) Solyc01g079780.2.1 (e_value=1e-99) genomic_reference:SL2.40ch01 gene_region:71427071-71430466 transcript_region:SL2.40ch01:71427071..71430466- functional_description:"Uncharacterized GPI-anchored protein At5g19250 (AHRD V1 ***- UGPI3_ARATH)"; NbS00041679g0001.1 protein AED:0.69 eAED:0.80 QI:0|0|0|0.5|1|1|4|0|141; (*GB) gi|224066313|ref|XP_002302078.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43680.2 (e_value=2e-21) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. | chr5:17544074-17545354 FORWARD LENGTH=232;; (*ITAG) Solyc04g080950.2.1 (e_value=2e-56) genomic_reference:SL2.40ch04 gene_region:62601559-62605364 transcript_region:SL2.40ch04:62601559..62605364- functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG95_ARATH)"; NbS00052528g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0.85|1|0.83|1|7|466|230; (*GB) gi|297743387|emb|CBI36254.3| (e_value=3e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H156|RAN3_ARATH (e_value=4e-144) GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2;; (*TAIR) AT5G55190.1 (e_value=3e-145) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221;; (*ITAG) Solyc01g104700.2.1 (e_value=3e-144) genomic_reference:SL2.40ch01 gene_region:84871561-84875061 transcript_region:SL2.40ch01:84871561..84875061- go_terms:GO:0003924 functional_description:"GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR018210 GTP-binding nuclear protein, Ran, conserved site IPR002041 Ran GTPase "; GO:0003924 NbS00052528g0005.1 protein AED:0.28 eAED:0.68 QI:0|0|0|1|0|0|2|0|67 NbS00048651g0007.1 protein AED:0.20 eAED:0.20 QI:252|1|0.87|1|0.57|0.5|8|469|1094; (*GB) gi|147790037|emb|CAN60525.1| (e_value=0.0) hypothetical protein VITISV_000522 [Vitis vinifera];; (*SWP) sp|Q0WSY2|FPP4_ARATH (e_value=0.0) Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1;; (*TAIR) AT1G19835.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF869) | chr1:6856212-6859513 REVERSE LENGTH=982;; (*ITAG) Solyc04g081260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62875381-62880736 transcript_region:SL2.40ch04:62875381..62880736+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00049135g0001.1 protein AED:0.11 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|373; (*GB) gi|359479846|ref|XP_002272042.2| (e_value=8e-177) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Vitis vinifera];; (*SWP) sp|C0LGW6|ERL1_ARATH (e_value=2e-30) LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1;; (*TAIR) AT4G03010.1 (e_value=7e-172) | Symbols: | RNI-like superfamily protein | chr4:1329952-1331139 FORWARD LENGTH=395;; (*ITAG) Solyc06g084420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45830306-45831511 transcript_region:SL2.40ch06:45830306..45831511+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00037964g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|565; (*GB) gi|225432490|ref|XP_002277378.1| (e_value=2e-117) PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Vitis vinifera];; (*SWP) sp|Q9M8J3|FRS7_ARATH (e_value=9e-110) Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1;; (*TAIR) AT3G06250.1 (e_value=7e-111) | Symbols: FRS7 | FAR1-related sequence 7 | chr3:1889771-1892065 REVERSE LENGTH=764;; (*ITAG) Solyc10g084220.1.1 (e_value=1e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63177612-63179951 transcript_region:SL2.40ch10:63177612..63179951+ go_terms:GO:0008270,GO:0007165 functional_description:"Protein FAR1-RELATED SEQUENCE 7 (AHRD V1 ***- FRS7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270,GO:0007165 NbS00041651g0002.1 protein AED:0.31 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|97; (*ITAG) Solyc10g084070.1.1 (e_value=4e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041651g0004.1 protein AED:0.35 eAED:0.44 QI:0|0|0|0.75|0.33|0.5|4|0|106; (*GB) gi|347300850|gb|AEO72339.1| (e_value=2e-24) asparagine synthetase 1 [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=8e-22) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=9e-19) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=1e-32) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00032678g0006.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|320; (*GB) gi|351726265|ref|NP_001235585.1| (e_value=8e-67) uncharacterized protein LOC100527403 [Glycine max];; (*TAIR) AT1G48320.1 (e_value=2e-64) | Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156;; (*ITAG) Solyc02g078410.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37684338-37684826 transcript_region:SL2.40ch02:37684338..37684826- go_terms:GO:0005515,GO:0016291 functional_description:"Acyl-CoA thioesterase/ catalytic/ hydrolase acting on ester bonds (AHRD V1 **-* B6TLJ7_MAIZE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0005515,GO:0016291 NbS00017353g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.6|1|0.57|0.53|15|662|791; (*GB) gi|224124794|ref|XP_002329950.1| (e_value=0.0) tubulin gamma complex-associated protein [Populus trichocarpa];; (*SWP) sp|Q8BKN5|GCP5_MOUSE (e_value=1e-26) Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2 SV=2;; (*TAIR) AT1G80260.1 (e_value=0.0) | Symbols: emb1427 | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30175924-30180511 FORWARD LENGTH=995;; (*ITAG) Solyc04g079390.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61494902-61503186 transcript_region:SL2.40ch04:61494902..61503186- go_terms:GO:0015631 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 **** Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0015631 NbS00017353g0006.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|357459141|ref|XP_003599851.1| (e_value=2e-43) Serpin-ZX [Medicago truncatula];; (*SWP) sp|Q9SIR9|SPZ10_ARATH (e_value=3e-38) Serpin-Z10 OS=Arabidopsis thaliana GN=At2g25240 PE=2 SV=1;; (*TAIR) AT2G25240.1 (e_value=2e-39) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr2:10751872-10753134 REVERSE LENGTH=385;; (*ITAG) Solyc04g079370.2.1 (e_value=4e-94) genomic_reference:SL2.40ch04 gene_region:61487601-61489480 transcript_region:SL2.40ch04:61487601..61489480+ go_terms:GO:0002020 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0002020 NbS00017353g0010.1 protein AED:0.19 eAED:0.19 QI:0|0|0.5|1|0|0|2|279|142; (*GB) gi|88193119|gb|ABD42934.1| (e_value=9e-52) ribosomal protein S14 [Juncus effusus];; (*SWP) sp|P14875|RT14_OENBE (e_value=3e-51) Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=2e-49) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00017353g0102.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|260 NbS00017353g0103.1 protein AED:0.18 eAED:0.21 QI:0|0.5|0.33|1|1|1|3|0|247 NbS00002935g0006.1 protein AED:0.24 eAED:0.28 QI:9|0.53|0.35|1|0.84|0.71|14|0|493; (*GB) gi|6715512|gb|AAF26445.1| (e_value=0.0) vacuolar H+-ATPase B subunit [Nicotiana tabacum];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=0.0) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.5 (e_value=0.0) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494;; (*ITAG) Solyc01g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00053148g0001.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0.33|1|1|1|3|0|329; (*GB) gi|156118326|gb|ABU49724.1| (e_value=2e-124) WRKY transcription factor 5 [Solanum tuberosum];; (*SWP) sp|Q93WV5|WRK69_ARATH (e_value=3e-53) Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1;; (*TAIR) AT3G58710.1 (e_value=2e-54) | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein 69 | chr3:21715192-21716766 FORWARD LENGTH=272;; (*ITAG) Solyc02g072190.2.1 (e_value=4e-125) genomic_reference:SL2.40ch02 gene_region:36084177-36085943 transcript_region:SL2.40ch02:36084177..36085943- go_terms:GO:0045449 functional_description:"WRKY transcription factor 5 (AHRD V1 ***- A7UGD2_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00002612g0002.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|476; (*GB) gi|356548210|ref|XP_003542496.1| (e_value=0.0) PREDICTED: 60S ribosomal protein L4-1-like [Glycine max];; (*SWP) sp|Q9SF40|RL4A_ARATH (e_value=6e-140) 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=5e-141) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=4e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00002612g0023.1 protein AED:0.00 eAED:0.00 QI:13|1|1|1|1|1|2|414|107; (*GB) gi|224069344|ref|XP_002326335.1| (e_value=8e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ZBN8|TIM14_BOVIN (e_value=4e-36) Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3;; (*TAIR) AT2G35795.1 (e_value=6e-62) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:15042321-15043334 FORWARD LENGTH=112;; (*ITAG) Solyc10g086040.1.1 (e_value=2e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64341569-64347037 transcript_region:SL2.40ch10:64341569..64347037- go_terms:GO:0001671 functional_description:"Mitochondrial import inner membrane translocase subunit TIM14 (AHRD V1 ***- B4FMD9_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0001671 NbS00002612g0022.1 protein AED:0.03 eAED:0.03 QI:223|0.75|0.8|1|0.5|0.2|5|288|616; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=2e-153) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=1e-154) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc10g086030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64334549-64337457 transcript_region:SL2.40ch10:64334549..64337457- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00002612g0020.1 protein AED:0.17 eAED:0.19 QI:45|0.25|0|1|0.5|0.4|5|0|520; (*GB) gi|255546473|ref|XP_002514296.1| (e_value=0.0) site-1 protease, putative [Ricinus communis];; (*SWP) sp|Q9WTZ2|MBTP1_MOUSE (e_value=9e-158) Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=0.0) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00002612g0021.1 protein AED:0.50 eAED:0.64 QI:0|0.2|0|0.66|0.8|0.5|6|486|63; (*SWP) sp|P46297|RS23_FRAAN (e_value=2e-13) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*ITAG) Solyc10g086020.1.1 (e_value=5e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00001694g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|164; (*GB) gi|351721446|ref|NP_001238489.1| (e_value=8e-94) uncharacterized protein LOC100499951 [Glycine max];; (*TAIR) AT3G53990.1 (e_value=8e-86) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:19989658-19991019 REVERSE LENGTH=160;; (*ITAG) Solyc09g011660.2.1 (e_value=8e-106) genomic_reference:SL2.40ch09 gene_region:4909289-4910765 transcript_region:SL2.40ch09:4909289..4910765- go_terms:GO:0006950 functional_description:"Universal stress protein 1 (AHRD V1 ***- B0YQX0_GOSAR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00001694g0006.1 protein AED:0.04 eAED:0.04 QI:68|1|1|1|1|1|2|53|223; (*GB) gi|359481716|ref|XP_002275657.2| (e_value=8e-78) PREDICTED: glutathione S-transferase U8-like [Vitis vinifera];; (*SWP) sp|Q9SR36|GSTU8_ARATH (e_value=2e-72) Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=1e-73) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011650.2.1 (e_value=3e-88) genomic_reference:SL2.40ch09 gene_region:4903272-4905768 transcript_region:SL2.40ch09:4903272..4905768+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** D8UY87_GLYSO); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364,GO:0043295 NbS00001694g0008.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|3|0|129; (*GB) gi|147773235|emb|CAN73674.1| (e_value=2e-12) hypothetical protein VITISV_001109 [Vitis vinifera];; (*TAIR) AT2G29490.1 (e_value=4e-13) | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-transferase TAU 1 | chr2:12631593-12632360 REVERSE LENGTH=224;; (*ITAG) Solyc09g011650.2.1 (e_value=1e-15) genomic_reference:SL2.40ch09 gene_region:4903272-4905768 transcript_region:SL2.40ch09:4903272..4905768+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** D8UY87_GLYSO); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364,GO:0043295 NbS00003655g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0|0.6|1|1|5|0|250; (*GB) gi|356505390|ref|XP_003521474.1| (e_value=3e-140) PREDICTED: 125 kDa kinesin-related protein-like [Glycine max];; (*SWP) sp|O23826|K125_TOBAC (e_value=9e-142) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=2e-136) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00036812g0008.1 protein AED:0.35 eAED:0.36 QI:0|0|0.5|1|1|1|2|1218|91; (*ITAG) Solyc01g080890.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:72726646-72727265 transcript_region:SL2.40ch01:72726646..72727265+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038540g0011.1 protein AED:0.43 eAED:0.43 QI:0|0.64|0.66|0.72|0.88|0.88|18|0|509; (*GB) gi|255563046|ref|XP_002522527.1| (e_value=0.0) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9H5Z1|DHX35_HUMAN (e_value=2e-151) Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2;; (*TAIR) AT4G18465.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr4:10197056-10201611 FORWARD LENGTH=695;; (*ITAG) Solyc09g097820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67082028-67094293 transcript_region:SL2.40ch09:67082028..67094293- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** C5JMZ5_AJEDS); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00038540g0008.1 protein AED:0.01 eAED:0.01 QI:122|1|1|1|1|1|2|297|140 NbS00033097g0011.1 protein AED:0.03 eAED:0.04 QI:177|0.66|0.75|1|0.33|0|4|277|441; (*GB) gi|297738233|emb|CBI27434.3| (e_value=3e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-51) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-52) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=4e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033097g0008.1 protein AED:0.04 eAED:0.04 QI:18|1|0.66|1|1|1|3|351|402; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=5e-43) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=4e-44) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011540.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00043638g0001.1 protein AED:0.31 eAED:0.38 QI:0|0.2|0.5|1|1|1|6|0|231; (*GB) gi|297819310|ref|XP_002877538.1| (e_value=2e-56) glycosyl hydrolase family 3 protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G20950.2 (e_value=5e-37) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc01g009240.2.1 (e_value=7e-46) genomic_reference:SL2.40ch01 gene_region:3269096-3273535 transcript_region:SL2.40ch01:3269096..3273535+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00044835g0002.1 protein AED:0.47 eAED:0.67 QI:0|0.4|0.16|0.83|0.2|0.16|6|0|138 NbS00007373g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|220; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=4e-124) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=1e-125) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=2e-72) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=7e-127) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00007373g0021.1 protein AED:0.16 eAED:0.16 QI:0|0.84|0.78|1|0.84|0.85|14|0|889; (*GB) gi|225460048|ref|XP_002273755.1| (e_value=0.0) PREDICTED: SCY1-like protein 2 [Vitis vinifera];; (*SWP) sp|Q8CFE4|SCYL2_MOUSE (e_value=1e-92) SCY1-like protein 2 OS=Mus musculus GN=Scyl2 PE=1 SV=1;; (*TAIR) AT1G22870.1 (e_value=0.0) | Symbols: | Protein kinase family protein with ARM repeat domain | chr1:8089501-8094173 FORWARD LENGTH=913;; (*ITAG) Solyc11g042990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00007373g0022.1 protein AED:0.17 eAED:0.17 QI:147|0.78|0.86|1|0.71|0.6|15|278|858; (*GB) gi|224135805|ref|XP_002327308.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8CFE4|SCYL2_MOUSE (e_value=9e-79) SCY1-like protein 2 OS=Mus musculus GN=Scyl2 PE=1 SV=1;; (*TAIR) AT1G71410.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:26913070-26917515 REVERSE LENGTH=909;; (*ITAG) Solyc11g042990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00038566g0003.1 protein AED:0.69 eAED:0.69 QI:68|0.33|0|0.5|1|0.75|4|0|52 NbS00008839g0001.1 protein AED:0.11 eAED:0.48 QI:0|0|0|1|0|0|3|0|137; (*GB) gi|57013950|ref|YP_173422.1| (e_value=3e-25) hypothetical protein NitaMp080 [Nicotiana tabacum];; (*ITAG) Solyc00g013150.1.1 (e_value=2e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:10685404-10685697 transcript_region:SL2.40ch00:10685404..10685697+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051172g0002.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0|0|5|0|252; (*ITAG) Solyc10g049530.1.1 (e_value=7e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00054412g0005.1 protein AED:0.25 eAED:0.25 QI:152|0.87|0.77|1|0.87|1|9|355|511; (*GB) gi|359479221|ref|XP_002279963.2| (e_value=4e-94) PREDICTED: uncharacterized protein LOC100265339 [Vitis vinifera];; (*TAIR) AT4G03250.1 (e_value=2e-63) | Symbols: | Homeodomain-like superfamily protein | chr4:1425050-1427744 FORWARD LENGTH=507;; (*ITAG) Solyc11g065110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47513848-47521993 transcript_region:SL2.40ch11:47513848..47521993+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *-*- D6BV21_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00001575g0001.1 protein AED:0.15 eAED:0.16 QI:116|1|0.5|1|0|0|2|0|758; (*GB) gi|225441770|ref|XP_002277767.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1-like [Vitis vinifera];; (*SWP) sp|P93756|SD31_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=2 SV=1;; (*TAIR) AT2G41890.1 (e_value=0.0) | Symbols: | curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein | chr2:17478058-17480352 REVERSE LENGTH=764;; (*ITAG) Solyc03g063650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:32677639-32679918 transcript_region:SL2.40ch03:32677639..32679918- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00023417g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|1|1|0.33|3|0|206; (*GB) gi|16797791|gb|AAL27150.1| (e_value=4e-95) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=4e-72) Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2;; (*TAIR) AT5G28770.1 (e_value=2e-35) | Symbols: BZO2H3, AtbZIP63 | bZIP transcription factor family protein | chr5:10796648-10798147 REVERSE LENGTH=307;; (*ITAG) Solyc01g097330.2.1 (e_value=2e-94) genomic_reference:SL2.40ch01 gene_region:79990166-79995989 transcript_region:SL2.40ch01:79990166..79995989+ go_terms:GO:0046982,GO:0003677 functional_description:"Opaque 2 (Fragment) (AHRD V1 *--- Q84YB2_ZEAPE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0003677 NbS00023417g0002.1 protein AED:0.17 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|193; (*GB) gi|16797791|gb|AAL27150.1| (e_value=3e-25) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=9e-24) Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2;; (*ITAG) Solyc08g022110.2.1 (e_value=8e-50) genomic_reference:SL2.40ch08 gene_region:12013154-12014514 transcript_region:SL2.40ch08:12013154..12014514- functional_description:"Light-inducible protein CPRF2 (AHRD V1 ***- CPRF2_PETCR)"; NbS00006057g0009.1 protein AED:0.16 eAED:0.16 QI:0|1|0.85|1|1|1|7|748|465; (*GB) gi|29470177|gb|AAO74500.1| (e_value=0.0) phytochelatin synthase 1 [Nicotiana tabacum];; (*SWP) sp|Q2TSC7|PCS1_LOTJA (e_value=0.0) Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1;; (*TAIR) AT5G44070.1 (e_value=0.0) | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin synthase 1 (PCS1) | chr5:17734876-17737672 FORWARD LENGTH=485;; (*ITAG) Solyc09g072620.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60741422-60747286 transcript_region:SL2.40ch09:60741422..60747286- go_terms:GO:0016756 functional_description:"Phytochelatin synthase (AHRD V1 ***- Q84JR4_SOLTU); contains Interpro domain(s) IPR015407 Phytochelatin synthase, C-terminal "; GO:0016756 NbS00006057g0010.1 protein AED:0.16 eAED:0.18 QI:0|0.33|0.25|1|0|0.25|4|0|614; (*GB) gi|296083687|emb|CBI23676.3| (e_value=6e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|B5WWZ9|FAO2_LOTJA (e_value=1e-131) Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1;; (*TAIR) AT4G28570.1 (e_value=2e-121) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:14119548-14121923 FORWARD LENGTH=748;; (*ITAG) Solyc09g072610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60713774-60717099 transcript_region:SL2.40ch09:60713774..60717099- go_terms:GO:0016614,GO:0050660,GO:0055114 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0016614,GO:0050660,GO:0055114 NbS00038903g0007.1 protein AED:0.00 eAED:0.00 QI:183|1|1|1|1|1|2|172|677; (*GB) gi|147790678|emb|CAN61022.1| (e_value=0.0) hypothetical protein VITISV_001142 [Vitis vinifera];; (*SWP) sp|Q93Y06|Y5720_ARATH (e_value=0.0) Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1;; (*TAIR) AT5G43020.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:17255426-17257742 REVERSE LENGTH=669;; (*ITAG) Solyc04g078590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60868289-60871189 transcript_region:SL2.40ch04:60868289..60871189+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00038903g0006.1 protein AED:0.03 eAED:0.03 QI:134|1|1|1|0.5|0.2|5|493|427; (*GB) gi|297738233|emb|CBI27434.3| (e_value=2e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-69) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-70) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g005890.1.1 (e_value=6e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:572620-574076 transcript_region:SL2.40ch04:572620..574076+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00024432g0006.1 protein AED:0.01 eAED:0.01 QI:215|1|1|1|1|0.83|6|181|357; (*GB) gi|255549236|ref|XP_002515672.1| (e_value=8e-156) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-98) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=2e-151) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc05g053900.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63066251-63072361 transcript_region:SL2.40ch05:63066251..63072361- go_terms:GO:0005515 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6TNP6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00024432g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|29468341|gb|AAO85510.1| (e_value=1e-39) SKP1 [Nicotiana benthamiana];; (*SWP) sp|Q9FHW7|SKP1B_ARATH (e_value=1e-34) SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1;; (*TAIR) AT5G42190.1 (e_value=1e-35) | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein | chr5:16854495-16855516 REVERSE LENGTH=171;; (*ITAG) Solyc11g042930.1.1 (e_value=6e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00038421g0004.1 protein AED:0.16 eAED:0.16 QI:204|0.9|0.90|1|1|1|21|174|1502; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00038421g0003.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|0.5|0|0|2|419|48 NbS00047271g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|0.75|4|0|767; (*GB) gi|225461154|ref|XP_002280117.1| (e_value=0.0) PREDICTED: formin-like protein 5-like [Vitis vinifera];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=0.0) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=0.0) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc07g064010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63535612-63541449 transcript_region:SL2.40ch07:63535612..63541449- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00047271g0003.1 protein AED:0.28 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|273; (*ITAG) Solyc07g063990.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63528557-63531698 transcript_region:SL2.40ch07:63528557..63531698- functional_description:"Unknown Protein (AHRD V1)"; NbS00047271g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|294|178; (*GB) gi|225461152|ref|XP_002282763.1| (e_value=1e-65) PREDICTED: 21.7 kDa class VI heat shock protein [Vitis vinifera];; (*SWP) sp|Q9FIT9|HS217_ARATH (e_value=5e-53) 21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana GN=HSP21.7 PE=2 SV=1;; (*TAIR) AT5G54660.1 (e_value=4e-54) | Symbols: | HSP20-like chaperones superfamily protein | chr5:22203950-22204986 FORWARD LENGTH=192;; (*ITAG) Solyc07g064020.2.1 (e_value=6e-88) genomic_reference:SL2.40ch07 gene_region:63544571-63546405 transcript_region:SL2.40ch07:63544571..63546405+ functional_description:"class I heat shock protein 1 (AHRD V1 ***- B6TTC8_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbC24974876g0004.1 protein AED:0.13 eAED:0.15 QI:0|1|0|1|1|1|2|0|65; (*GB) gi|224134274|ref|XP_002321779.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51120.2 (e_value=3e-12) | Symbols: PABN1 | polyadenylate-binding protein 1 | chr5:20779760-20781241 FORWARD LENGTH=265;; (*ITAG) Solyc03g094090.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:49250587-49251515 transcript_region:SL2.40ch03:49250587..49251515- functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY)"; NbS00027943g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|224073047|ref|XP_002303956.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=3e-18) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=2e-19) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc01g005200.1.1 (e_value=1e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:154250-155140 transcript_region:SL2.40ch01:154250..155140+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M6E6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbC25623793g0002.1 protein AED:0.00 eAED:0.01 QI:0|1|1|1|1|1|2|0|75 NbS00059779g0003.1 protein AED:0.30 eAED:0.30 QI:199|0.66|0.7|0.9|1|1|10|0|726; (*GB) gi|297744483|emb|CBI37745.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WQD2|GAUT3_ARATH (e_value=0.0) Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2;; (*TAIR) AT4G38270.1 (e_value=0.0) | Symbols: GAUT3 | galacturonosyltransferase 3 | chr4:17938433-17941410 FORWARD LENGTH=680;; (*ITAG) Solyc01g112210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90022133-90027607 transcript_region:SL2.40ch01:90022133..90027607- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IC41_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00059779g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|225428280|ref|XP_002279627.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17210-like [Vitis vinifera];; (*SWP) sp|Q9SII7|PP159_ARATH (e_value=4e-160) Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2;; (*TAIR) AT2G17210.1 (e_value=2e-161) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7485398-7487602 REVERSE LENGTH=715;; (*ITAG) Solyc01g112200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90019581-90021908 transcript_region:SL2.40ch01:90019581..90021908- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L8S9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00059779g0002.1 protein AED:0.59 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|118488304|gb|ABK95971.1| (e_value=9e-70) unknown [Populus trichocarpa];; (*SWP) sp|Q9SII7|PP159_ARATH (e_value=9e-59) Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2;; (*TAIR) AT2G17210.1 (e_value=4e-50) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7485398-7487602 REVERSE LENGTH=715;; (*ITAG) Solyc01g112200.2.1 (e_value=1e-117) genomic_reference:SL2.40ch01 gene_region:90019581-90021908 transcript_region:SL2.40ch01:90019581..90021908- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L8S9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007392g0010.1 protein AED:0.00 eAED:0.00 QI:62|1|0.5|1|0|0.5|2|0|744; (*GB) gi|225440234|ref|XP_002278622.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267097 [Vitis vinifera];; (*TAIR) AT2G40980.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17102090-17104443 FORWARD LENGTH=617;; (*ITAG) Solyc10g077020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59263762-59269147 transcript_region:SL2.40ch10:59263762..59269147+ go_terms:GO:0006468 functional_description:"AT2G40980-like protein (Fragment) (AHRD V1 *-*- D6PPH2_9BRAS); contains Interpro domain(s) IPR011009 Protein kinase-like "; GO:0006468 NbS00007392g0002.1 protein AED:0.11 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|150; (*ITAG) Solyc09g072770.1.1 (e_value=3e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60943399-60944010 transcript_region:SL2.40ch09:60943399..60944010+ functional_description:"mRNA clone RAFL22-93-M12 (Fragment) (AHRD V1 *-*- Q67ZI7_ARATH)"; NbS00021835g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.83|0.8|0.96|0.62|0.64|25|275|958; (*GB) gi|359483669|ref|XP_002274947.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253161 [Vitis vinifera];; (*TAIR) AT2G34680.1 (e_value=0.0) | Symbols: AIR9 | Outer arm dynein light chain 1 protein | chr2:14616947-14628300 REVERSE LENGTH=1708;; (*ITAG) Solyc02g070260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34600500-34626149 transcript_region:SL2.40ch02:34600500..34626149+ go_terms:GO:0005515 functional_description:"Protein phosphatase 1 regulatory subunit 7 (AHRD V1 *--- C0S143_PARBP); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00021835g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|547; (*GB) gi|225444011|ref|XP_002274916.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc02g070270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34628194-34630077 transcript_region:SL2.40ch02:34628194..34630077+ go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_HUMAN); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00008930g0011.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|5|39|424; (*GB) gi|225450015|ref|XP_002272444.1| (e_value=3e-128) PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera];; (*SWP) sp|P74565|RPOD_SYNY3 (e_value=1e-56) RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpoD PE=3 SV=1;; (*TAIR) AT5G13730.1 (e_value=2e-103) | Symbols: SIG4, SIGD | sigma factor 4 | chr5:4429132-4430744 REVERSE LENGTH=419;; (*ITAG) Solyc01g087690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74375979-74378427 transcript_region:SL2.40ch01:74375979..74378427- go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 ***- Q59965_SYNP2); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0006355 NbS00008930g0015.1 protein AED:0.40 eAED:0.40 QI:51|0.75|0.6|1|0.5|0.6|5|0|263; (*GB) gi|225450017|ref|XP_002274669.1| (e_value=8e-88) PREDICTED: uncharacterized protein LOC100267159 [Vitis vinifera];; (*TAIR) AT5G13720.1 (e_value=4e-87) | Symbols: | Uncharacterised protein family (UPF0114) | chr5:4427960-4429029 FORWARD LENGTH=262;; (*ITAG) Solyc01g087680.2.1 (e_value=6e-98) genomic_reference:SL2.40ch01 gene_region:74370412-74374466 transcript_region:SL2.40ch01:74370412..74374466+ functional_description:"Uncharacterized membrane protein (AHRD V1 ***- A5GLU3_SYNPW); contains Interpro domain(s) IPR016804 Uncharacterised conserved protein UCP022348 "; NbS00008930g0014.1 protein AED:0.43 eAED:0.43 QI:172|0|0.5|1|1|0.5|2|0|133; (*GB) gi|356557188|ref|XP_003546900.1| (e_value=7e-25) PREDICTED: uncharacterized protein LOC100799451 [Glycine max];; (*TAIR) AT5G13720.1 (e_value=4e-14) | Symbols: | Uncharacterised protein family (UPF0114) | chr5:4427960-4429029 FORWARD LENGTH=262;; (*ITAG) Solyc01g087680.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:74370412-74374466 transcript_region:SL2.40ch01:74370412..74374466+ functional_description:"Uncharacterized membrane protein (AHRD V1 ***- A5GLU3_SYNPW); contains Interpro domain(s) IPR016804 Uncharacterised conserved protein UCP022348 "; NbS00026294g0018.1 protein AED:0.07 eAED:0.07 QI:367|0.77|0.6|1|0.66|0.7|10|298|883; (*GB) gi|297744051|emb|CBI37021.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=0.0) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=0.0) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc01g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00026294g0001.1 protein AED:0.19 eAED:0.19 QI:228|0.5|0.66|1|0|0.33|3|839|313; (*GB) gi|356572840|ref|XP_003554573.1| (e_value=1e-142) PREDICTED: probable calcium-activated outward-rectifying potassium channel 5, chloroplastic-like [Glycine max];; (*SWP) sp|Q9S6Z8|TPK5_ARATH (e_value=5e-127) Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1;; (*TAIR) AT4G01840.1 (e_value=4e-128) | Symbols: KCO5, ATTPK5, ATKCO5, TPK5 | Ca2+ activated outward rectifying K+ channel 5 | chr4:793403-794933 FORWARD LENGTH=408;; (*ITAG) Solyc06g009330.2.1 (e_value=1e-173) genomic_reference:SL2.40ch06 gene_region:3284452-3286607 transcript_region:SL2.40ch06:3284452..3286607+ go_terms:GO:0015271 functional_description:"Outward rectifying potassium channel (AHRD V1 **** B9GT93_POPTR); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271 NbS00026294g0016.1 protein AED:0.66 eAED:0.90 QI:0|0|0|0.88|0.62|0.55|9|0|363 NbS00005975g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc03g121340.1.1 (e_value=7e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63517699-63517959 transcript_region:SL2.40ch03:63517699..63517959+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005975g0014.1 protein AED:0.17 eAED:0.22 QI:0|0.5|0|1|0.5|0|3|0|712; (*GB) gi|147863560|emb|CAN84040.1| (e_value=0.0) hypothetical protein VITISV_024170 [Vitis vinifera];; (*SWP) sp|P59278|Y1745_ARATH (e_value=4e-56) Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2;; (*TAIR) AT1G51745.2 (e_value=2e-58) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr1:19192236-19194375 FORWARD LENGTH=504;; (*ITAG) Solyc03g121320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63507750-63513367 transcript_region:SL2.40ch03:63507750..63513367+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbS00005975g0012.1 protein AED:0.30 eAED:0.30 QI:64|0.66|0.75|1|0.66|0.75|4|251|208; (*GB) gi|76573317|gb|ABA46763.1| (e_value=2e-86) unknown [Solanum tuberosum];; (*SWP) sp|O82204|RL281_ARATH (e_value=2e-69) 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1;; (*TAIR) AT2G19730.3 (e_value=2e-70) | Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143;; (*ITAG) Solyc03g121330.2.1 (e_value=8e-90) genomic_reference:SL2.40ch03 gene_region:63514413-63516687 transcript_region:SL2.40ch03:63514413..63516687+ go_terms:GO:0005515 functional_description:"60S ribosomal protein L28 (AHRD V1 ***- B3TLS3_ELAGV); contains Interpro domain(s) IPR002672 Ribosomal protein L28e "; GO:0005515 NbS00005975g0017.1 protein AED:0.10 eAED:0.10 QI:197|0.85|0.86|1|0.85|0.93|15|296|667; (*GB) gi|359482865|ref|XP_002276359.2| (e_value=0.0) PREDICTED: anoctamin-7-like [Vitis vinifera];; (*SWP) sp|A0MFS9|CACLC_ARATH (e_value=0.0) Anoctamin-like protein At1g73020 OS=Arabidopsis thaliana GN=At1g73020 PE=2 SV=1;; (*TAIR) AT1G73020.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). | chr1:27469714-27473181 REVERSE LENGTH=665;; (*ITAG) Solyc03g121350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63518526-63524599 transcript_region:SL2.40ch03:63518526..63524599- functional_description:"Anoctamin-like protein (AHRD V1 ***- D0MXY8_PHYIN); contains Interpro domain(s) IPR007632 Protein of unknown function DUF590 "; NbS00062246g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.71|1|0.33|0.42|7|0|433; (*GB) gi|225437400|ref|XP_002270318.1| (e_value=7e-169) PREDICTED: gamma-tubulin complex component 4 homolog [Vitis vinifera];; (*SWP) sp|Q9M350|GCP4_ARATH (e_value=1e-150) Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana GN=At3g53760 PE=2 SV=2;; (*TAIR) AT3G53760.1 (e_value=8e-152) | Symbols: GCP4, ATGCP4 | GAMMA-TUBULIN COMPLEX PROTEIN 4 | chr3:19918182-19922264 REVERSE LENGTH=745;; (*ITAG) Solyc09g075190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62458603-62469576 transcript_region:SL2.40ch09:62458603..62469576- go_terms:GO:0015631 functional_description:"Gamma-tubulin complex component 4 (Predicted) (AHRD V1 **** B2KIP3_RHIFE); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0015631 NbS00012093g0016.1 protein AED:0.00 eAED:0.00 QI:163|1|1|1|1|1|3|342|301; (*GB) gi|225431637|ref|XP_002263124.1| (e_value=1e-157) PREDICTED: gibberellin 3-beta-dioxygenase 4-like [Vitis vinifera];; (*SWP) sp|P24397|HY6H_HYONI (e_value=2e-29) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT1G14130.1 (e_value=3e-126) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:4836041-4837040 REVERSE LENGTH=308;; (*ITAG) Solyc02g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32870930-32873310 transcript_region:SL2.40ch02:32870930..32873310- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **-- B9GJL0_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00012093g0005.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|255565081|ref|XP_002523533.1| (e_value=4e-106) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g068350.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32896287-32897225 transcript_region:SL2.40ch02:32896287..32897225- go_terms:GO:0033014 functional_description:"Uroporphyrinogen-III synthase (AHRD V1 ***- Q3M8K2_ANAVT); contains Interpro domain(s) IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase "; GO:0033014 NbS00012093g0019.1 protein AED:0.17 eAED:0.17 QI:0|0.89|0.95|1|0.94|0.95|20|257|1134; (*GB) gi|1491931|gb|AAC49393.1| (e_value=0.0) kinesin-like protein [Nicotiana tabacum];; (*SWP) sp|Q7XPJ0|KCBP_ORYSJ (e_value=0.0) Kinesin-like calmodulin-binding protein homolog OS=Oryza sativa subsp. japonica GN=Os04g0666900 PE=2 SV=1;; (*TAIR) AT5G65930.3 (e_value=0.0) | Symbols: ZWI | kinesin-like calmodulin-binding protein (ZWICHEL) | chr5:26370369-26376394 REVERSE LENGTH=1266;; (*ITAG) Solyc02g068340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32877427-32887048 transcript_region:SL2.40ch02:32877427..32887048- go_terms:GO:0005516 functional_description:"Kinesin-like calmodulin binding protein (AHRD V1 **** Q7Y1U0_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005516 NbS00012093g0014.1 protein AED:0.27 eAED:0.27 QI:230|0.75|0.4|1|0.75|0.6|5|0|290; (*GB) gi|224117680|ref|XP_002317641.1| (e_value=2e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9V6G5|TAZ_DROME (e_value=4e-47) Tafazzin homolog OS=Drosophila melanogaster GN=Taz PE=2 SV=2;; (*TAIR) AT1G78690.1 (e_value=5e-128) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:29597002-29598409 FORWARD LENGTH=284;; (*ITAG) Solyc02g068360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32897572-32901128 transcript_region:SL2.40ch02:32897572..32901128- go_terms:GO:0047184 functional_description:"Tafazzin (AHRD V1 ***- C1BN32_9MAXI); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0047184 NbS00012093g0021.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0|1|0.5|0.66|3|0|767; (*GB) gi|5545339|dbj|BAA82556.1| (e_value=2e-177) lectin-like protein kinase [Populus nigra];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=3e-96) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=2e-97) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc02g068300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32860048-32864698 transcript_region:SL2.40ch02:32860048..32864698+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00013948g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.71|1|0.66|0.57|7|190|280; (*GB) gi|224116236|ref|XP_002317246.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYN2|VAP42_ARATH (e_value=2e-119) Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1;; (*TAIR) AT4G21450.1 (e_value=2e-120) | Symbols: | PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295;; (*ITAG) Solyc02g079230.2.1 (e_value=8e-152) genomic_reference:SL2.40ch02 gene_region:38419981-38424111 transcript_region:SL2.40ch02:38419981..38424111- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR000535 Major sperm protein "; GO:0005198 NbS00013948g0001.1 protein AED:0.11 eAED:0.11 QI:147|0.5|0.8|1|0|0.4|5|686|909; (*GB) gi|359482115|ref|XP_003632713.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT4G13650.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064;; (*ITAG) Solyc02g079260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38445499-38448782 transcript_region:SL2.40ch02:38445499..38448782- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00013948g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|224076777|ref|XP_002304995.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g079240.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38429123-38429362 transcript_region:SL2.40ch02:38429123..38429362- functional_description:"Unknown Protein (AHRD V1)"; NbS00013948g0011.1 protein AED:0.33 eAED:0.33 QI:201|1|0.88|1|0.87|1|9|450|408; (*GB) gi|356554991|ref|XP_003545824.1| (e_value=1e-173) PREDICTED: putative PAP-specific phosphatase, mitochondrial-like [Glycine max];; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=2e-167) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1;; (*TAIR) AT4G05090.1 (e_value=2e-168) | Symbols: | Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397;; (*ITAG) Solyc02g079250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38432003-38443209 transcript_region:SL2.40ch02:38432003..38443209+ go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase-like protein (AHRD V1 **** Q682R6_ARATH); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008441 NbS00027368g0016.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|0|0.5|2|0|593; (*GB) gi|337255727|gb|AEI61930.1| (e_value=0.0) carotenoid cleavage dioxygenase 4 [Nicotiana tabacum];; (*SWP) sp|O49675|CCD4_ARATH (e_value=0.0) Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1;; (*TAIR) AT4G19170.1 (e_value=0.0) | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481835-10483622 FORWARD LENGTH=595;; (*ITAG) Solyc08g075490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56809898-56812517 transcript_region:SL2.40ch08:56809898..56812517- go_terms:GO:0005515 functional_description:"Carotenoid cleavage dioxygenase 4B"; GO:0005515 NbS00027368g0017.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|0.9|0.90|11|152|691; (*GB) gi|225427266|ref|XP_002281271.1| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 6 [Vitis vinifera];; (*SWP) sp|Q9Y2V7|COG6_HUMAN (e_value=9e-122) Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=2 SV=2;; (*TAIR) AT1G31780.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr1:11391341-11394610 FORWARD LENGTH=680;; (*ITAG) Solyc08g075440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56755018-56761863 transcript_region:SL2.40ch08:56755018..56761863+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 6 (AHRD V1 ***- COG6_BOVIN); contains Interpro domain(s) IPR010490 Conserved oligomeric complex COG6 "; GO:0005515 NbS00027368g0020.1 protein AED:0.38 eAED:0.38 QI:616|0.8|0.66|1|0|0|6|0|203; (*GB) gi|342730594|gb|AEL33280.1| (e_value=2e-54) putative auxin-induced protein [Camellia sinensis];; (*TAIR) AT4G19185.1 (e_value=4e-50) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:10489201-10491488 REVERSE LENGTH=398;; (*ITAG) Solyc08g075470.2.1 (e_value=8e-65) genomic_reference:SL2.40ch08 gene_region:56785411-56792428 transcript_region:SL2.40ch08:56785411..56792428+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00012796g0010.1 protein AED:0.11 eAED:0.12 QI:0|0.16|0|1|0.83|0.71|7|0|1047; (*GB) gi|222093457|gb|ACM43505.1| (e_value=0.0) polyphenoloxidase [Camellia nitidissima];; (*SWP) sp|P43309|PPO_MALDO (e_value=7e-180) Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1;; (*ITAG) Solyc02g078650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37895897-37898700 transcript_region:SL2.40ch02:37895897..37898700+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- B3WFP2_TAROF); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00012796g0001.1 protein AED:0.16 eAED:0.23 QI:0|0|0|1|1|1|3|0|376; (*GB) gi|17402469|emb|CAD13177.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc04g077020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00021330g0005.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|435; (*GB) gi|256258961|gb|ACU64887.1| (e_value=6e-93) UDP-T1 [Oryza minuta];; (*SWP) sp|O23382|U71B5_ARATH (e_value=1e-38) UDP-glycosyltransferase 71B5 OS=Arabidopsis thaliana GN=UGT71B5 PE=2 SV=1;; (*TAIR) AT4G15280.1 (e_value=8e-40) | Symbols: UGT71B5 | UDP-glucosyl transferase 71B5 | chr4:8719182-8720618 FORWARD LENGTH=478;; (*ITAG) Solyc02g088500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45151406-45152794 transcript_region:SL2.40ch02:45151406..45152794- go_terms:GO:0080043 functional_description:"C-glucosyltransferase (AHRD V1 **** C3W7B0_ORYSJ); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00021330g0001.1 protein AED:0.18 eAED:0.18 QI:1792|0.94|0.94|1|0.5|0.42|19|720|371; (*GB) gi|356551046|ref|XP_003543890.1| (e_value=0.0) PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max];; (*SWP) sp|Q9LF41|UBE4_ARATH (e_value=0.0) Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1;; (*TAIR) AT5G15400.1 (e_value=0.0) | Symbols: | U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038;; (*ITAG) Solyc06g074770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42707036-42710008 transcript_region:SL2.40ch06:42707036..42710008+ go_terms:GO:0031625 functional_description:"Ubiquitin conjugation factor E4 (AHRD V1 **** A8NR84_COPC7); contains Interpro domain(s) IPR019474 Ubiquitin conjugation factor E4, core "; GO:0031625 NbS00021330g0016.1 protein AED:0.10 eAED:0.10 QI:185|1|1|1|0.8|0.83|6|526|371; (*GB) gi|255584325|ref|XP_002532898.1| (e_value=2e-159) rRNA methylase, putative [Ricinus communis];; (*SWP) sp|O67577|TRMH_AQUAE (e_value=3e-28) tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus (strain VF5) GN=trmH PE=1 SV=1;; (*TAIR) AT5G15390.1 (e_value=3e-146) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr5:4995333-4997255 FORWARD LENGTH=350;; (*ITAG) Solyc02g088540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45170430-45173503 transcript_region:SL2.40ch02:45170430..45173503+ go_terms:GO:0006396 functional_description:"tRNA guanosine-2&apos-O-methyltransferase (AHRD V1 *-*- B9L1B3_THERP); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00021330g0004.1 protein AED:0.21 eAED:0.21 QI:162|1|1|1|1|1|2|52|452; (*GB) gi|224077724|ref|XP_002305380.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGI2|SCPDL_ARATH (e_value=0.0) Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2;; (*TAIR) AT5G39410.1 (e_value=0.0) | Symbols: | Saccharopine dehydrogenase | chr5:15768415-15770274 REVERSE LENGTH=454;; (*ITAG) Solyc02g088490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45148014-45151287 transcript_region:SL2.40ch02:45148014..45151287+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase (AHRD V1 ***- B6T3D2_MAIZE); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00021330g0014.1 protein AED:0.37 eAED:0.43 QI:0|0|0|1|0.5|0.33|3|0|249; (*GB) gi|255584329|ref|XP_002532900.1| (e_value=5e-124) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LGI2|SCPDL_ARATH (e_value=2e-106) Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2;; (*TAIR) AT5G39410.1 (e_value=1e-107) | Symbols: | Saccharopine dehydrogenase | chr5:15768415-15770274 REVERSE LENGTH=454;; (*ITAG) Solyc02g088490.2.1 (e_value=5e-146) genomic_reference:SL2.40ch02 gene_region:45148014-45151287 transcript_region:SL2.40ch02:45148014..45151287+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase (AHRD V1 ***- B6T3D2_MAIZE); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00046098g0004.1 protein AED:0.11 eAED:0.11 QI:220|0.5|0.6|1|1|0.8|5|0|306; (*GB) gi|359478275|ref|XP_002274820.2| (e_value=3e-69) PREDICTED: uncharacterized protein LOC100249037 [Vitis vinifera];; (*TAIR) AT3G59780.1 (e_value=3e-55) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:22086906-22090324 FORWARD LENGTH=686;; (*ITAG) Solyc03g059180.2.1 (e_value=8e-105) genomic_reference:SL2.40ch03 gene_region:25233405-25241771 transcript_region:SL2.40ch03:25233405..25241771- functional_description:"Extracellular calcium sensing receptor (AHRD V1 *-*- C7BCU7_LIQFO); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00024184g0006.1 protein AED:0.22 eAED:0.26 QI:0|0|0|1|1|1|2|0|102; (*GB) gi|255563590|ref|XP_002522797.1| (e_value=1e-34) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=5e-19) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=4e-20) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=1e-50) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00024184g0017.1 protein AED:0.40 eAED:0.72 QI:0|0|0|1|0.66|0.5|4|0|185; (*GB) gi|297740917|emb|CBI31099.3| (e_value=4e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-45) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-43) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-47) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00024184g0018.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0|2|0|362; (*GB) gi|57014017|ref|YP_173488.1| (e_value=2e-169) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=5e-171) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-163) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-172) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00024184g0019.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0|0|2|0|166; (*GB) gi|57013958|ref|YP_173430.1| (e_value=2e-67) hypothetical protein NitaMp091 [Nicotiana tabacum]; NbS00015536g0003.1 protein AED:0.21 eAED:0.22 QI:3|1|0|1|1|1|2|0|304; (*GB) gi|12711287|emb|CAC28528.1| (e_value=0.0) GATA-1 zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q6DBP8|GAT11_ARATH (e_value=7e-45) GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1;; (*TAIR) AT1G08010.2 (e_value=5e-46) | Symbols: GATA11 | GATA transcription factor 11 | chr1:2486202-2487402 REVERSE LENGTH=303;; (*ITAG) Solyc11g069510.1.1 (e_value=8e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51208122-51211616 transcript_region:SL2.40ch11:51208122..51211616- go_terms:GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00026129g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|277; (*ITAG) Solyc06g074550.2.1 (e_value=1e-61) genomic_reference:SL2.40ch06 gene_region:42521995-42525107 transcript_region:SL2.40ch06:42521995..42525107+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021969g0012.1 protein AED:0.41 eAED:0.42 QI:0|0|0.5|1|1|1|2|190|61 NbS00021969g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|571; (*GB) gi|224123678|ref|XP_002319139.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFQ4|PP383_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2;; (*TAIR) AT5G15010.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4857241-4858959 FORWARD LENGTH=572;; (*ITAG) Solyc07g025250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26966772-26968418 transcript_region:SL2.40ch07:26966772..26968418- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021969g0010.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.25|1|1|4|0|157; (*ITAG) Solyc05g015130.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:9890819-9895301 transcript_region:SL2.40ch05:9890819..9895301- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00021969g0013.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0|0|2|0|170; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-14) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=9e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00030759g0012.1 protein AED:0.09 eAED:0.09 QI:158|0.94|0.94|1|0.72|0.73|19|272|971; (*GB) gi|359487304|ref|XP_002277709.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265428 [Vitis vinifera];; (*TAIR) AT5G21080.1 (e_value=0.0) | Symbols: | Uncharacterized protein | chr5:7158035-7162906 REVERSE LENGTH=1025;; (*ITAG) Solyc01g087450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74178496-74185824 transcript_region:SL2.40ch01:74178496..74185824+ functional_description:"Cyclin-like protein (AHRD V1 ***- Q6ZIX9_ORYSJ)"; NbS00030759g0010.1 protein AED:0.18 eAED:0.18 QI:372|0.83|0.71|1|1|1|7|329|301; (*GB) gi|356528104|ref|XP_003532645.1| (e_value=5e-80) PREDICTED: probable protein phosphatase 2C 28-like [Glycine max];; (*SWP) sp|O64583|P2C28_ARATH (e_value=3e-73) Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=2;; (*TAIR) AT2G34740.1 (e_value=2e-74) | Symbols: | Protein phosphatase 2C family protein | chr2:14658730-14660305 FORWARD LENGTH=339;; (*ITAG) Solyc01g087460.1.1 (e_value=8e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74186001-74188784 transcript_region:SL2.40ch01:74186001..74188784+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q6QLU0_SOLLC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00021114g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.88|0.8|1|0.77|0.7|10|249|455; (*GB) gi|224081585|ref|XP_002306460.1| (e_value=1e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=9e-154) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1;; (*TAIR) AT2G15790.1 (e_value=7e-155) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361;; (*ITAG) Solyc02g090480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46588712-46594323 transcript_region:SL2.40ch02:46588712..46594323+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003755 NbS00021114g0016.1 protein AED:0.19 eAED:0.39 QI:38|0|0.12|0.37|0.57|0.62|8|0|191; (*GB) gi|358248962|ref|NP_001239714.1| (e_value=6e-22) uncharacterized protein LOC100804369 [Glycine max];; (*TAIR) AT3G50520.1 (e_value=5e-21) | Symbols: | Phosphoglycerate mutase family protein | chr3:18748058-18749418 FORWARD LENGTH=230;; (*ITAG) Solyc02g065080.2.1 (e_value=5e-30) genomic_reference:SL2.40ch02 gene_region:30825650-30835753 transcript_region:SL2.40ch02:30825650..30835753- go_terms:GO:0016868 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 *-*- GPMA_METS4); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0016868 NbS00021114g0017.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.5|1|0.2|0.33|6|0|426; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=0.0) patatin-like protein 3 [Nicotiana tabacum];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=3e-97) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=1e-140) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc02g090490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46594534-46596748 transcript_region:SL2.40ch02:46594534..46596748- go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00004869g0009.1 protein AED:0.33 eAED:1.00 QI:2|0|0|0.66|0.5|0.33|3|0|94 NbS00004869g0010.1 protein AED:0.25 eAED:0.26 QI:0|0.57|0.5|1|0.57|0.5|8|0|331; (*GB) gi|255561146|ref|XP_002521585.1| (e_value=1e-167) N-acetylglucosamine kinase, putative [Ricinus communis];; (*SWP) sp|Q54PM7|NAGK_DICDI (e_value=6e-44) N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2;; (*TAIR) AT1G30540.1 (e_value=2e-136) | Symbols: | Actin-like ATPase superfamily protein | chr1:10816951-10819172 REVERSE LENGTH=351;; (*ITAG) Solyc07g044750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55121747-55127054 transcript_region:SL2.40ch07:55121747..55127054- functional_description:"ATPase BadF/BadG/BcrA/BcrD-type family (AHRD V1 ***- D7KFL2_ARALY); contains Interpro domain(s) IPR002731 ATPase, BadF/BadG/BcrA/BcrD type "; NbS00023312g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0|1|1|1|4|0|635; (*GB) gi|296088086|emb|CBI35445.3| (e_value=2e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXA7|GTE2_ARATH (e_value=4e-83) Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2;; (*TAIR) AT5G10550.1 (e_value=4e-83) | Symbols: GTE2 | global transcription factor group E2 | chr5:3332855-3335232 REVERSE LENGTH=678;; (*ITAG) Solyc02g091660.2.1 (e_value=1e-165) genomic_reference:SL2.40ch02 gene_region:47480890-47483281 transcript_region:SL2.40ch02:47480890..47483281- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *--* D7KG11_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00043147g0013.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|0.37|0.33|9|0|377; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-73) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00043147g0012.1 protein AED:0.28 eAED:0.52 QI:0|0|0.5|1|1|0.5|2|0|146 NbS00057690g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|528 NbS00016132g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=9e-64) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=8e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=2e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbS00039270g0009.1 protein AED:0.11 eAED:0.15 QI:0|0.66|0.42|1|0|0|7|0|300; (*GB) gi|224066683|ref|XP_002302179.1| (e_value=9e-104) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=7e-36) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G43650.1 (e_value=1e-92) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:16443861-16446814 REVERSE LENGTH=343;; (*ITAG) Solyc04g071430.1.1 (e_value=2e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55999921-56002819 transcript_region:SL2.40ch04:55999921..56002819+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FGG3_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00039270g0007.1 protein AED:0.27 eAED:0.27 QI:484|1|1|1|1|1|2|441|99; (*GB) gi|225434241|ref|XP_002276129.1| (e_value=3e-20) PREDICTED: uncharacterized protein LOC100245762 [Vitis vinifera];; (*TAIR) AT2G31840.1 (e_value=1e-18) | Symbols: | Thioredoxin superfamily protein | chr2:13538003-13539602 REVERSE LENGTH=350;; (*ITAG) Solyc04g071420.2.1 (e_value=2e-24) genomic_reference:SL2.40ch04 gene_region:55994275-55996502 transcript_region:SL2.40ch04:55994275..55996502+ functional_description:"Thioredoxin family protein (AHRD V1 ***- B6TC88_MAIZE); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00006214g0009.1 protein AED:0.43 eAED:0.65 QI:55|0.25|0.2|1|1|1|5|0|69 NbS00006214g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.75|0.75|0.66|0.75|4|747|91; (*GB) gi|255538046|ref|XP_002510088.1| (e_value=4e-42) Pollen-specific protein SF3, putative [Ricinus communis];; (*SWP) sp|P29675|SF3_HELAN (e_value=9e-28) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=3e-37) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc12g088320.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62198526-62200434 transcript_region:SL2.40ch12:62198526..62200434- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00006214g0001.1 protein AED:0.27 eAED:0.29 QI:160|0|0.5|1|0|0.5|2|389|477; (*ITAG) Solyc12g088310.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62188573-62194315 transcript_region:SL2.40ch12:62188573..62194315- functional_description:"Unknown Protein (AHRD V1)"; NbS00015723g0007.1 protein AED:0.02 eAED:0.02 QI:196|1|1|1|1|1|4|292|595; (*GB) gi|225459073|ref|XP_002283776.1| (e_value=0.0) PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis vinifera];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=3e-106) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT4G30200.3 (e_value=7e-115) | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | chr4:14786852-14790070 REVERSE LENGTH=702;; (*ITAG) Solyc04g076400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58900908-58905317 transcript_region:SL2.40ch04:58900908..58905317+ go_terms:GO:0005515 functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC)"; GO:0005515 NbS00015723g0008.1 protein AED:0.11 eAED:0.14 QI:0|0|0|1|1|1|2|0|226; (*ITAG) Solyc04g076410.2.1 (e_value=6e-41) genomic_reference:SL2.40ch04 gene_region:58906101-58909496 transcript_region:SL2.40ch04:58906101..58909496- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7M8T6_ARALY)"; NbS00025337g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|695; (*GB) gi|126143480|dbj|BAF47279.1| (e_value=0.0) lectin-receptor like protein kinase 3 [Nicotiana tabacum];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G04960.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:2533096-2535156 FORWARD LENGTH=686;; (*ITAG) Solyc02g078170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00025337g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|1801; (*GB) gi|356557685|ref|XP_003547144.1| (e_value=0.0) PREDICTED: callose synthase 11-like [Glycine max];; (*SWP) sp|Q9S9U0|CALSB_ARATH (e_value=0.0) Callose synthase 11 OS=Arabidopsis thaliana GN=CALS11 PE=2 SV=1;; (*TAIR) AT4G04970.1 (e_value=0.0) | Symbols: ATGSL1, ATGSL01, GSL01, GSL1 | glucan synthase-like 1 | chr4:2537039-2542434 FORWARD LENGTH=1768;; (*ITAG) Solyc02g078230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37558671-37566482 transcript_region:SL2.40ch02:37558671..37566482- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00025337g0018.1 protein AED:0.04 eAED:0.04 QI:69|1|1|1|0|0.5|2|373|944; (*GB) gi|359496164|ref|XP_002269383.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253928 [Vitis vinifera];; (*TAIR) AT4G21700.1 (e_value=1e-176) | Symbols: | Protein of unknown function (DUF2921) | chr4:11529956-11532844 FORWARD LENGTH=962;; (*ITAG) Solyc02g078220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37554011-37556827 transcript_region:SL2.40ch02:37554011..37556827+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025337g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.4|1|1|0.8|5|0|772; (*GB) gi|170282492|gb|ACB12194.1| (e_value=0.0) PHO2 [Nicotiana benthamiana];; (*SWP) sp|Q8VY10|UBC24_ARATH (e_value=4e-152) Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1;; (*TAIR) AT2G33770.1 (e_value=3e-153) | Symbols: UBC24, ATUBC24, PHO2 | phosphate 2 | chr2:14277785-14281482 REVERSE LENGTH=907;; (*ITAG) Solyc02g078210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37547439-37553218 transcript_region:SL2.40ch02:37547439..37553218+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 22 (AHRD V1 ***- D7L888_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00025337g0020.1 protein AED:0.34 eAED:0.36 QI:0|0.5|0.4|1|1|1|5|0|222; (*GB) gi|255556067|ref|XP_002519068.1| (e_value=2e-32) 50S ribosomal protein L21, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q8L9A0|RM21_ARATH (e_value=1e-32) 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1;; (*TAIR) AT4G30930.1 (e_value=7e-34) | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270;; (*ITAG) Solyc02g078200.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:37533967-37538228 transcript_region:SL2.40ch02:37533967..37538228+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6TJJ8_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00027796g0001.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.25|1|1|4|0|124; (*GB) gi|255564836|ref|XP_002523412.1| (e_value=3e-54) lysyl-tRNA synthetase, putative [Ricinus communis];; (*SWP) sp|Q5N1D9|SYK_SYNP6 (e_value=1e-40) Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1;; (*TAIR) AT3G13490.1 (e_value=2e-56) | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class II | chr3:4395984-4399302 REVERSE LENGTH=602;; (*ITAG) Solyc01g005540.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:359831-370398 transcript_region:SL2.40ch01:359831..370398- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SBP3_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00009776g0015.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0|0.33|3|0|155; (*GB) gi|374341580|gb|AEZ35207.1| (e_value=4e-64) ntrax [Nicotiana tabacum];; (*SWP) sp|Q9SJL7|RAX2_ARATH (e_value=6e-59) Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1;; (*TAIR) AT5G57620.1 (e_value=4e-61) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc09g008250.2.1 (e_value=4e-70) genomic_reference:SL2.40ch09 gene_region:1718596-1720352 transcript_region:SL2.40ch09:1718596..1720352- go_terms:GO:0003700,GO:0005516 functional_description:"MYB transcription factor (AHRD V1 *--* Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0005516 NbS00009776g0013.1 protein AED:0.29 eAED:0.29 QI:258|1|0.8|1|1|1|5|0|241; (*GB) gi|356548270|ref|XP_003542526.1| (e_value=6e-106) PREDICTED: uncharacterized protein LOC100795364 [Glycine max];; (*TAIR) AT2G36895.1 (e_value=3e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 32 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15489176-15490296 REVERSE LENGTH=232;; (*ITAG) Solyc10g083990.1.1 (e_value=4e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62995709-62998491 transcript_region:SL2.40ch10:62995709..62998491- functional_description:"Unknown Protein (AHRD V1)"; NbS00009776g0011.1 protein AED:0.37 eAED:0.37 QI:270|1|1|1|1|1|3|444|65; (*GB) gi|351722567|ref|NP_001235201.1| (e_value=7e-39) uncharacterized protein LOC100527632 [Glycine max];; (*TAIR) AT2G36930.1 (e_value=1e-36) | Symbols: | zinc finger (C2H2 type) family protein | chr2:15510002-15511347 REVERSE LENGTH=198;; (*ITAG) Solyc09g008230.2.1 (e_value=2e-43) genomic_reference:SL2.40ch09 gene_region:1681078-1684790 transcript_region:SL2.40ch09:1681078..1684790+ go_terms:GO:0003714 functional_description:"Zinc finger protein 593 (Fragment) (AHRD V1 **-- B2L5L2_XENBO); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0003714 NbS00020996g0011.1 protein AED:0.20 eAED:0.20 QI:238|1|1|1|1|1|7|335|309; (*GB) gi|75098910|sp|O49814.1|BCH2_CAPAN (e_value=1e-177) RecName: Full=Beta-carotene hydroxylase 2, chloroplastic; Flags: Precursor;; (*SWP) sp|O49814|BCH2_CAPAN (e_value=4e-179) Beta-carotene hydroxylase 2, chloroplastic (Fragment) OS=Capsicum annuum GN=CA2 PE=2 SV=1;; (*TAIR) AT5G52570.1 (e_value=4e-135) | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene hydroxylase 2 | chr5:21334911-21336887 REVERSE LENGTH=303;; (*ITAG) Solyc06g036260.2.1 (e_value=6e-174) genomic_reference:SL2.40ch06 gene_region:22432178-22434113 transcript_region:SL2.40ch06:22432178..22434113- go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 1"; GO:0010291 NbS00020996g0013.1 protein AED:0.22 eAED:0.22 QI:199|1|0.9|1|1|1|10|222|531; (*GB) gi|302143770|emb|CBI22631.3| (e_value=6e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=7e-71) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT3G49140.1 (e_value=5e-72) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18212187-18215557 REVERSE LENGTH=499;; (*ITAG) Solyc06g036340.2.1 (e_value=1e-161) genomic_reference:SL2.40ch06 gene_region:22593116-22598519 transcript_region:SL2.40ch06:22593116..22598519- functional_description:"Unknown Protein (AHRD V1)"; NbS00020996g0004.1 protein AED:0.24 eAED:0.24 QI:173|0.87|0.88|1|0.87|0.77|9|369|295; (*GB) gi|119331598|gb|ABL63125.1| (e_value=4e-115) MYB transcription factor [Catharanthus roseus];; (*SWP) sp|Q6R0H0|ASG4_ARATH (e_value=4e-68) Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1;; (*TAIR) AT5G52660.2 (e_value=1e-89) | Symbols: | Homeodomain-like superfamily protein | chr5:21359423-21362037 REVERSE LENGTH=331;; (*ITAG) Solyc06g036300.2.1 (e_value=3e-153) genomic_reference:SL2.40ch06 gene_region:22496774-22504988 transcript_region:SL2.40ch06:22496774..22504988- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR87_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00020996g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|357443815|ref|XP_003592185.1| (e_value=2e-136) Ornithine cyclodeaminase [Medicago truncatula];; (*SWP) sp|Q9HDZ0|YK01_SCHPO (e_value=5e-46) Uncharacterized protein P11E10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP11E10.01 PE=2 SV=1;; (*TAIR) AT5G52810.1 (e_value=8e-123) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:21399524-21400501 FORWARD LENGTH=325;; (*ITAG) Solyc06g036330.1.1 (e_value=9e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22591706-22592686 transcript_region:SL2.40ch06:22591706..22592686+ go_terms:GO:0070324 functional_description:"Ornithine cyclodeaminase protein (AHRD V1 ***- A3I2L0_9BACT); contains Interpro domain(s) IPR003462 Ornithine cyclodeaminase/mu-crystallin "; GO:0070324 NbS00020996g0012.1 protein AED:0.30 eAED:0.30 QI:55|1|1|1|1|1|5|167|260; (*GB) gi|83284001|gb|ABC01908.1| (e_value=2e-122) putative 24 kDa seed maturation protein-like protein [Solanum tuberosum];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=1e-90) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=7e-92) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc06g036430.2.1 (e_value=4e-129) genomic_reference:SL2.40ch06 gene_region:22670133-22672817 transcript_region:SL2.40ch06:22670133..22672817+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00036279g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|158518418|sp|P83326.2|PMEI_ACTDE (e_value=2e-44) RecName: Full=Pectinesterase inhibitor; AltName: Full=AdPMEI; Short=PMEI; AltName: Full=Pectin methylesterase inhibitor; Flags: Precursor;; (*SWP) sp|P83326|PMEI_ACTDE (e_value=6e-46) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*TAIR) AT3G17220.1 (e_value=5e-24) | Symbols: ATPMEI2, PMEI2 | pectin methylesterase inhibitor 2 | chr3:5883328-5883849 REVERSE LENGTH=173;; (*ITAG) Solyc03g112180.1.1 (e_value=3e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56728543-56729061 transcript_region:SL2.40ch03:56728543..56729061+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** A7IZL3_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00032414g0003.1 protein AED:0.33 eAED:0.41 QI:0|0.4|0.5|1|0.6|0.5|6|524|105; (*GB) gi|313586489|gb|ADR71255.1| (e_value=2e-61) 60S ribosomal protein L35aA [Hevea brasiliensis];; (*SWP) sp|Q9C912|R35A3_ARATH (e_value=2e-62) 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1;; (*TAIR) AT1G74270.1 (e_value=1e-63) | Symbols: | Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112;; (*ITAG) Solyc05g052800.2.1 (e_value=6e-70) genomic_reference:SL2.40ch05 gene_region:62130017-62132095 transcript_region:SL2.40ch05:62130017..62132095- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35a (AHRD V1 ***- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae "; GO:0003735 NbS00021865g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|146; (*ITAG) Solyc05g010270.1.1 (e_value=3e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4431688-4432116 transcript_region:SL2.40ch05:4431688..4432116- functional_description:"Unknown Protein (AHRD V1)"; NbS00021865g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|3|0|566; (*GB) gi|225425051|ref|XP_002271021.1| (e_value=0.0) PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Vitis vinifera];; (*SWP) sp|P21577|6PGD_SYNE7 (e_value=2e-155) 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4;; (*TAIR) AT3G02360.1 (e_value=0.0) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr3:482498-483958 FORWARD LENGTH=486;; (*ITAG) Solyc04g005160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:106694-108109 transcript_region:SL2.40ch04:106694..108109- go_terms:GO:0004616,GO:0042802 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 **** B9N1W3_POPTR); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating "; GO:0004616,GO:0042802 NbS00008620g0001.1 protein AED:0.21 eAED:0.32 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|224085180|ref|XP_002307513.1| (e_value=6e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g071980.2.1 (e_value=3e-43) genomic_reference:SL2.40ch04 gene_region:56591441-56596377 transcript_region:SL2.40ch04:56591441..56596377- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00014237g0003.1 protein AED:0.35 eAED:0.35 QI:0|0.85|0.75|0.87|1|1|8|0|252; (*GB) gi|356460907|ref|NP_001239045.1| (e_value=5e-115) calcineurin B-like 10 [Solanum lycopersicum];; (*SWP) sp|Q7FRS8|CNBLA_ARATH (e_value=8e-91) Calcineurin B-like protein 10 OS=Arabidopsis thaliana GN=CBL10 PE=1 SV=1;; (*TAIR) AT4G33000.2 (e_value=4e-92) | Symbols: CBL10, SCABP8, ATCBL10 | calcineurin B-like protein 10 | chr4:15924821-15926398 FORWARD LENGTH=246;; (*ITAG) Solyc08g065330.2.1 (e_value=1e-117) genomic_reference:SL2.40ch08 gene_region:50446717-50455805 transcript_region:SL2.40ch08:50446717..50455805+ go_terms:GO:0005515 functional_description:"Calcineurin B-like protein 06 (AHRD V1 ***- C4P7Z3_VITVI); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005515 NbS00032610g0007.1 protein AED:0.28 eAED:0.30 QI:60|0.57|0.5|0.87|0.85|0.62|8|0|340; (*GB) gi|359473158|ref|XP_002282194.2| (e_value=4e-71) PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera];; (*TAIR) AT1G13120.1 (e_value=3e-52) | Symbols: | | chr1:4469334-4472775 REVERSE LENGTH=611;; (*ITAG) Solyc05g013790.2.1 (e_value=5e-76) genomic_reference:SL2.40ch05 gene_region:7100783-7110858 transcript_region:SL2.40ch05:7100783..7110858- go_terms:GO:0005643 functional_description:"Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like "; GO:0005643 NbS00032610g0005.1 protein AED:0.76 eAED:0.84 QI:33|0|0|0.5|0|0|2|0|68 NbS00055933g0003.1 protein AED:0.19 eAED:0.21 QI:5|0.14|0|0.87|0.28|0|8|0|289; (*GB) gi|147818657|emb|CAN71810.1| (e_value=1e-69) hypothetical protein VITISV_003872 [Vitis vinifera];; (*SWP) sp|Q67XZ3|INV3_ARATH (e_value=7e-60) Beta-fructofuranosidase, insoluble isoenzyme CWINV3 OS=Arabidopsis thaliana GN=CWINV3 PE=1 SV=2;; (*TAIR) AT1G55120.2 (e_value=2e-61) | Symbols: ATFRUCT5, FRUCT5 | beta-fructofuranosidase 5 | chr1:20566983-20569165 FORWARD LENGTH=555;; (*ITAG) Solyc06g064620.2.1 (e_value=1e-105) genomic_reference:SL2.40ch06 gene_region:36656911-36660263 transcript_region:SL2.40ch06:36656911..36660263- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00041453g0006.1 protein AED:0.09 eAED:0.09 QI:58|0.77|0.7|0.8|0.44|0.5|10|310|302; (*GB) gi|255550892|ref|XP_002516494.1| (e_value=0.0) Serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q683C9|AUR2_ARATH (e_value=0.0) Serine/threonine-protein kinase Aurora-2 OS=Arabidopsis thaliana GN=AUR2 PE=2 SV=2;; (*TAIR) AT2G25880.1 (e_value=0.0) | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034887-11036827 REVERSE LENGTH=288;; (*ITAG) Solyc08g066050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51711501-51714276 transcript_region:SL2.40ch08:51711501..51714276+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 6 (AHRD V1 ***- B5X2V6_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00041453g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.92|1|0.76|0.92|14|0|500; (*GB) gi|356507939|ref|XP_003522720.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Glycine max];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc08g066100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51736381-51744102 transcript_region:SL2.40ch08:51736381..51744102- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00001657g0006.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|321; (*GB) gi|186511233|ref|NP_567099.2| (e_value=2e-12) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G60410.3 (e_value=4e-15) | Symbols: | Protein of unknown function (DUF1639) | chr3:22331612-22332680 FORWARD LENGTH=324;; (*ITAG) Solyc10g039360.1.1 (e_value=2e-77) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:21302119-21303497 transcript_region:SL2.40ch10:21302119..21303497+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00001657g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.5|1|1|1|4|0|521; (*GB) gi|225432666|ref|XP_002282465.1| (e_value=0.0) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=5e-14) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT3G22440.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr3:7959854-7961886 FORWARD LENGTH=532;; (*ITAG) Solyc09g076050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63235327-63238938 transcript_region:SL2.40ch09:63235327..63238938+ functional_description:"FRIGIDA (Fragment) (AHRD V1 *--- B0Z034_ARALP); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00001657g0008.1 protein AED:0.37 eAED:0.70 QI:78|0.33|0.25|1|0.66|0.75|4|0|196 NbS00013783g0010.1 protein AED:0.21 eAED:0.21 QI:110|1|0.88|1|0.75|0.66|9|0|464; (*GB) gi|356525780|ref|XP_003531501.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max];; (*SWP) sp|P81795|IF2G_RAT (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00008675g0018.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0.2|0.8|0.75|0.6|5|0|320; (*GB) gi|225457411|ref|XP_002282066.1| (e_value=1e-67) PREDICTED: protein RKD2-like [Vitis vinifera];; (*SWP) sp|Q9M9U9|RKD1_ARATH (e_value=1e-45) Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1;; (*TAIR) AT1G18790.1 (e_value=1e-46) | Symbols: | RWP-RK domain-containing protein | chr1:6478851-6480043 REVERSE LENGTH=269;; (*ITAG) Solyc03g116010.1.1 (e_value=1e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59599834-59601280 transcript_region:SL2.40ch03:59599834..59601280- functional_description:"RWP-RK domain-containing protein (AHRD V1 *-*- D7KS24_ARALY); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00008675g0014.1 protein AED:0.15 eAED:0.15 QI:79|1|1|1|1|1|2|296|218; (*GB) gi|225457413|ref|XP_002284935.1| (e_value=5e-63) PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera];; (*TAIR) AT5G62440.1 (e_value=2e-57) | Symbols: | Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202;; (*ITAG) Solyc03g116020.2.1 (e_value=6e-100) genomic_reference:SL2.40ch03 gene_region:59602755-59604468 transcript_region:SL2.40ch03:59602755..59604468- functional_description:"DNA-directed RNA polymerase (AHRD V1 *--- B9RC12_RICCO)"; NbS00008675g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|499; (*GB) gi|356513527|ref|XP_003525465.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g47530-like [Glycine max];; (*SWP) sp|Q9SN85|PP267_ARATH (e_value=7e-154) Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1;; (*TAIR) AT3G47530.1 (e_value=5e-155) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17517382-17519157 REVERSE LENGTH=591;; (*ITAG) Solyc03g116000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59596583-59598448 transcript_region:SL2.40ch03:59596583..59598448- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00008675g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|492; (*GB) gi|75216452|sp|Q9ZS34.1|CHLP_TOBAC (e_value=0.0) RecName: Full=Geranylgeranyl diphosphate reductase, chloroplastic; AltName: Full=Geranylgeranyl reductase; Flags: Precursor;; (*SWP) sp|Q9ZS34|CHLP_TOBAC (e_value=0.0) Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1;; (*TAIR) AT1G74470.1 (e_value=0.0) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr1:27991248-27992845 FORWARD LENGTH=467;; (*ITAG) Solyc03g115980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59589011-59590405 transcript_region:SL2.40ch03:59589011..59590405+ go_terms:GO:0005515 functional_description:"Geranylgeranyl reductase (AHRD V1 ***- Q1ZYL0_OLEEU); contains Interpro domain(s) IPR011774 Geranylgeranyl reductase, plants and cyanobacteria "; GO:0005515 NbS00008675g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|441; (*GB) gi|5123836|emb|CAB45387.1| (e_value=0.0) NAD-malate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SN86|MDHP_ARATH (e_value=0.0) Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1;; (*TAIR) AT3G47520.1 (e_value=0.0) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403;; (*ITAG) Solyc03g115990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59594180-59595418 transcript_region:SL2.40ch03:59594180..59595418+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** O48906_MEDSA); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00041378g0007.1 protein AED:0.09 eAED:0.09 QI:264|0.83|0.71|1|1|1|7|0|763; (*GB) gi|359487822|ref|XP_003633655.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase WNK1-like [Vitis vinifera];; (*SWP) sp|Q9CAV6|WNK1_ARATH (e_value=0.0) Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1;; (*TAIR) AT3G04910.1 (e_value=0.0) | Symbols: WNK1, ZIK4, ATWNK1 | with no lysine (K) kinase 1 | chr3:1355084-1358057 FORWARD LENGTH=700;; (*ITAG) Solyc01g097840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80304661-80308285 transcript_region:SL2.40ch01:80304661..80308285+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00041378g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.71|1|0.83|0.71|7|963|294; (*GB) gi|356573091|ref|XP_003554698.1| (e_value=2e-107) PREDICTED: uncharacterized protein LOC100800250 [Glycine max];; (*TAIR) AT1G54520.1 (e_value=1e-95) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:20363565-20365874 FORWARD LENGTH=391;; (*ITAG) Solyc01g097860.2.1 (e_value=3e-166) genomic_reference:SL2.40ch01 gene_region:80316593-80324129 transcript_region:SL2.40ch01:80316593..80324129- functional_description:"Membrane protein (AHRD V1 *-*- A8JG04_CHLRE); contains Interpro domain(s) IPR010903 Protein of unknown function DUF1517 "; NbS00009577g0004.1 protein AED:0.07 eAED:0.09 QI:0|0.4|0.5|0.83|0.2|0.33|6|0|295; (*GB) gi|225454759|ref|XP_002274164.1| (e_value=5e-97) PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera];; (*TAIR) AT4G17720.1 (e_value=6e-85) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc06g072770.2.1 (e_value=5e-128) genomic_reference:SL2.40ch06 gene_region:41263197-41266916 transcript_region:SL2.40ch06:41263197..41266916+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00026288g0001.1 protein AED:0.35 eAED:0.36 QI:407|0|0.5|1|0|0.5|2|0|128; (*GB) gi|225441405|ref|XP_002278550.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera];; (*TAIR) AT3G57930.2 (e_value=7e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g078710.1.1 (e_value=3e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59763165-59763572 transcript_region:SL2.40ch10:59763165..59763572- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; NbS00004662g0009.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|133711806|gb|ABO36624.1| (e_value=2e-20) hypothetical protein LYC_68t000008 [Solanum lycopersicum];; (*TAIR) AT4G16580.1 (e_value=1e-13) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc10g079180.2.1 (e_value=4e-23) genomic_reference:SL2.40ch10 gene_region:60104390-60105346 transcript_region:SL2.40ch10:60104390..60105346- go_terms:GO:0003824 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00004662g0010.1 protein AED:0.30 eAED:0.30 QI:171|1|0.66|1|0.8|0.83|6|0|421; (*GB) gi|225441347|ref|XP_002274658.1| (e_value=1e-145) PREDICTED: peptide chain release factor 2-like [Vitis vinifera];; (*SWP) sp|P74476|RF2_SYNY3 (e_value=2e-50) Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2;; (*TAIR) AT3G57190.1 (e_value=3e-112) | Symbols: | peptide chain release factor, putative | chr3:21166468-21168198 FORWARD LENGTH=406;; (*ITAG) Solyc10g079840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60644106-60648799 transcript_region:SL2.40ch10:60644106..60648799+ go_terms:GO:0005737,GO:0006415 functional_description:"Peptide chain release factor 2 (AHRD V1 ***- B6UHD9_MAIZE); contains Interpro domain(s) IPR005139 Peptide chain release factor "; GO:0005737,GO:0006415 NbS00004662g0003.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|163; (*GB) gi|294440434|gb|ADE74634.1| (e_value=5e-94) early responsive to dehydration 1 protein [Nicotiana tabacum];; (*SWP) sp|Q94AR4|CID2_ARATH (e_value=2e-16) Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1;; (*TAIR) AT2G41430.5 (e_value=1e-30) | Symbols: ERD15 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163;; (*ITAG) Solyc10g079820.1.1 (e_value=5e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60636659-60637440 transcript_region:SL2.40ch10:60636659..60637440+ functional_description:"Early response to dehydration 15-like protein (Fragment) (AHRD V1 **-- Q5MED0_PSEMZ); contains Interpro domain(s) IPR009818 Ataxin-2, C-terminal "; NbS00004662g0011.1 protein AED:0.25 eAED:0.79 QI:0|0|0|1|0|0|2|0|86 NbS00004662g0103.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|93 NbS00053166g0001.1 protein AED:0.25 eAED:0.26 QI:0|0.25|0|0.8|1|1|5|0|796; (*GB) gi|225456800|ref|XP_002277813.1| (e_value=0.0) PREDICTED: programmed cell death protein 4 [Vitis vinifera];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=7e-34) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT5G63190.2 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00032167g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.33|3|0|528; (*GB) gi|85068630|gb|ABC69395.1| (e_value=0.0) CYP71D47v2 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=1e-121) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc02g062030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28192771-28194362 transcript_region:SL2.40ch02:28192771..28194362+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032167g0005.1 protein AED:0.40 eAED:0.46 QI:34|0.4|0.33|0.66|1|0.83|6|0|142; (*GB) gi|363806846|ref|NP_001242036.1| (e_value=7e-49) uncharacterized protein LOC100793642 [Glycine max];; (*SWP) sp|P53611|PGTB2_HUMAN (e_value=4e-30) Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2;; (*TAIR) AT5G12210.1 (e_value=6e-50) | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl transferase beta subunit 1 | chr5:3947254-3949595 FORWARD LENGTH=321;; (*ITAG) Solyc03g118570.2.1 (e_value=2e-58) genomic_reference:SL2.40ch03 gene_region:61502514-61505162 transcript_region:SL2.40ch03:61502514..61505162+ go_terms:GO:0005515,GO:0004663 functional_description:"Geranylgeranyltransferase type II beta subunit (AHRD V1 **** D3TMI7_GLOMM); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0005515,GO:0004663 NbS00058873g0003.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|360; (*GB) gi|317448463|emb|CBI83762.1| (e_value=2e-133) transcription factor DREB2a [Nicotiana benthamiana];; (*SWP) sp|Q8H1E4|RAP24_ARATH (e_value=3e-45) Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1;; (*TAIR) AT1G78080.1 (e_value=2e-46) | Symbols: RAP2.4 | related to AP2 4 | chr1:29364790-29365794 FORWARD LENGTH=334;; (*ITAG) Solyc04g054910.2.1 (e_value=2e-78) genomic_reference:SL2.40ch04 gene_region:52554444-52556186 transcript_region:SL2.40ch04:52554444..52556186+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00025111g0006.1 protein AED:0.11 eAED:0.14 QI:0|0.42|0.37|1|0.28|0.37|8|0|584; (*GB) gi|224063357|ref|XP_002301110.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|O04514|OPT2_ARATH (e_value=0.0) Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2;; (*TAIR) AT1G09930.1 (e_value=0.0) | Symbols: ATOPT2, OPT2 | oligopeptide transporter 2 | chr1:3227490-3230043 REVERSE LENGTH=734;; (*ITAG) Solyc04g076760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59239550-59242872 transcript_region:SL2.40ch04:59239550..59242872+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00022114g0008.1 protein AED:0.26 eAED:0.27 QI:84|0.5|0.66|1|0|0|3|0|160; (*GB) gi|224096900|ref|XP_002310779.1| (e_value=5e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L3R2|CML41_ARATH (e_value=5e-42) Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2;; (*TAIR) AT3G50770.1 (e_value=4e-43) | Symbols: CML41 | calmodulin-like 41 | chr3:18873987-18874604 FORWARD LENGTH=205;; (*ITAG) Solyc03g044900.2.1 (e_value=1e-75) genomic_reference:SL2.40ch03 gene_region:14746177-14747185 transcript_region:SL2.40ch03:14746177..14747185- go_terms:GO:0005509 functional_description:"Calmodulin-like protein 41 (AHRD V1 ***- B6T5H7_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00017034g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.83|0.83|0.8|0.83|6|26|160; (*GB) gi|225454123|ref|XP_002269748.1| (e_value=9e-100) PREDICTED: cleavage and polyadenylation specificity factor subunit 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6DJE4|CPSF5_XENLA (e_value=6e-59) Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1;; (*TAIR) AT4G25550.1 (e_value=7e-97) | Symbols: | Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200;; (*ITAG) Solyc03g025880.2.1 (e_value=3e-104) genomic_reference:SL2.40ch03 gene_region:7657669-7669323 transcript_region:SL2.40ch03:7657669..7669323- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- B9EQF4_SALSA); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00017034g0017.1 protein AED:0.36 eAED:0.45 QI:0|0.33|0.25|1|0.33|0.5|4|0|343; (*GB) gi|255539487|ref|XP_002510808.1| (e_value=1e-66) steroid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9M2Z4|MSBP2_ARATH (e_value=1e-58) Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1;; (*TAIR) AT3G48890.1 (e_value=1e-59) | Symbols: ATMP2, ATMAPR3, MSBP2, MAPR3 | membrane-associated progesterone binding protein 3 | chr3:18129669-18131353 FORWARD LENGTH=233;; (*ITAG) Solyc03g025950.2.1 (e_value=2e-76) genomic_reference:SL2.40ch03 gene_region:7764256-7767163 transcript_region:SL2.40ch03:7764256..7767163+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 ***- C0NU44_AJECG); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00010935g0008.1 protein AED:0.06 eAED:0.06 QI:12|0.66|0|1|0.66|0.5|4|0|367; (*GB) gi|77416931|gb|ABA81861.1| (e_value=0.0) UDP-glucose:protein transglucosylase-like [Solanum tuberosum];; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc05g012070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5295089-5298245 transcript_region:SL2.40ch05:5295089..5298245- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00010935g0007.1 protein AED:0.21 eAED:0.21 QI:11|1|1|1|1|1|2|265|87 NbS00010935g0009.1 protein AED:0.23 eAED:0.32 QI:45|0.5|0.2|1|0.25|0.6|5|0|204; (*GB) gi|297738200|emb|CBI27401.3| (e_value=4e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4R599|TSNAX_MACFA (e_value=4e-26) Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2 SV=1;; (*TAIR) AT2G03780.1 (e_value=9e-103) | Symbols: | Translin family protein | chr2:1152716-1154285 REVERSE LENGTH=287;; (*ITAG) Solyc04g005310.2.1 (e_value=4e-125) genomic_reference:SL2.40ch04 gene_region:223160-224874 transcript_region:SL2.40ch04:223160..224874+ go_terms:GO:0031687 functional_description:"Translin family protein (AHRD V1 ***- D7LQL3_ARALY); contains Interpro domain(s) IPR002848 Translin "; GO:0031687 NbS00029574g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|225436753|ref|XP_002269809.1| (e_value=1e-54) PREDICTED: uncharacterized protein LOC100257975 [Vitis vinifera];; (*TAIR) AT5G07900.1 (e_value=3e-44) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc04g072550.1.1 (e_value=2e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00041100g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.71|0.85|0.83|0.71|7|850|289; (*GB) gi|224135215|ref|XP_002327594.1| (e_value=6e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=1e-37) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT5G37310.1 (e_value=1e-112) | Symbols: | Endomembrane protein 70 protein family | chr5:14772836-14776093 REVERSE LENGTH=593;; (*ITAG) Solyc05g054040.2.1 (e_value=7e-136) genomic_reference:SL2.40ch05 gene_region:63167515-63172773 transcript_region:SL2.40ch05:63167515..63172773- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00041100g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|224139046|ref|XP_002326754.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31940.1 (e_value=7e-28) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=5e-40) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00041100g0015.1 protein AED:0.04 eAED:0.05 QI:18|0.75|0.6|1|0.5|0.6|5|103|447; (*GB) gi|225424490|ref|XP_002285189.1| (e_value=1e-97) PREDICTED: uncharacterized protein LOC100262958 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=3e-53) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G68130.1 (e_value=2e-84) | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domain 14 | chr1:25532484-25534317 FORWARD LENGTH=419;; (*ITAG) Solyc05g054030.2.1 (e_value=2e-153) genomic_reference:SL2.40ch05 gene_region:63157458-63160584 transcript_region:SL2.40ch05:63157458..63160584+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU3_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00041100g0101.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|294 NbS00009410g0012.1 protein AED:0.16 eAED:0.20 QI:240|0.55|0.8|1|0.55|0.7|10|274|324; (*GB) gi|5902454|dbj|BAA84468.1| (e_value=1e-160) RNase NGR2 [Nicotiana glutinosa];; (*SWP) sp|P42814|RNS2_ARATH (e_value=1e-93) Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1;; (*TAIR) AT2G39780.1 (e_value=1e-94) | Symbols: RNS2 | ribonuclease 2 | chr2:16591256-16593515 FORWARD LENGTH=259;; (*ITAG) Solyc09g020110.2.1 (e_value=4e-139) genomic_reference:SL2.40ch09 gene_region:18416997-18428931 transcript_region:SL2.40ch09:18416997..18428931+ go_terms:GO:0004521 functional_description:"S-like RNase (Fragment) (AHRD V1 ***- D8TKF1_VOLCA); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00009410g0004.1 protein AED:0.01 eAED:0.01 QI:63|0.6|0.83|0.83|0.6|0.5|6|834|531; (*GB) gi|359495424|ref|XP_003634990.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100852824 [Vitis vinifera];; (*TAIR) AT5G48340.1 (e_value=3e-157) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19590785-19592487 FORWARD LENGTH=510;; (*ITAG) Solyc09g020150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:18643901-18653983 transcript_region:SL2.40ch09:18643901..18653983+ functional_description:"Genomic DNA chromosome 5 TAC clone K23F3 (AHRD V1 ***- Q9LK80_ARATH)"; NbS00013969g0008.1 protein AED:0.06 eAED:0.06 QI:294|1|1|1|0.83|1|7|436|877; (*GB) gi|255587360|ref|XP_002534244.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=2e-51) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT5G54200.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:21993565-21997076 REVERSE LENGTH=825;; (*ITAG) Solyc10g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1322954-1333280 transcript_region:SL2.40ch10:1322954..1333280+ go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7MTR4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004871 NbS00013969g0007.1 protein AED:0.16 eAED:0.16 QI:269|0.5|0.42|1|1|1|7|204|391; (*GB) gi|21068893|dbj|BAB93003.1| (e_value=0.0) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q41249|PORA_CUCSA (e_value=6e-163) Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1;; (*TAIR) AT1G03630.1 (e_value=1e-155) | Symbols: POR C, PORC | protochlorophyllide oxidoreductase C | chr1:907699-909245 FORWARD LENGTH=401;; (*ITAG) Solyc10g006900.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1335152-1338824 transcript_region:SL2.40ch10:1335152..1338824+ go_terms:GO:0004745 functional_description:"Protochlorophyllide reductase (AHRD V1 ***- Q8LAV9_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0004745 NbS00020990g0009.1 protein AED:0.28 eAED:0.29 QI:438|0.57|0.5|1|0.57|0.5|8|0|532; (*GB) gi|359490920|ref|XP_002272298.2| (e_value=1e-114) PREDICTED: uncharacterized protein LOC100264587 [Vitis vinifera];; (*SWP) sp|P49592|NC2B_ARATH (e_value=2e-80) Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1;; (*TAIR) AT5G23100.1 (e_value=3e-82) | Symbols: | Protein of unknown function, DUF617 | chr5:7753557-7754390 FORWARD LENGTH=277;; (*ITAG) Solyc03g114390.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00033910g0004.1 protein AED:0.52 eAED:0.52 QI:6|0.33|0.5|1|0.66|0.75|4|33|112; (*GB) gi|224066513|ref|XP_002302117.1| (e_value=9e-56) SecY protein [Populus trichocarpa];; (*SWP) sp|F4IQV7|SCY2_ARATH (e_value=4e-54) Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1;; (*TAIR) AT2G31530.1 (e_value=3e-55) | Symbols: EMB2289, SCY2 | SecY protein transport family protein | chr2:13427060-13430308 FORWARD LENGTH=575;; (*ITAG) Solyc09g065120.2.1 (e_value=4e-61) genomic_reference:SL2.40ch09 gene_region:58581273-58591924 transcript_region:SL2.40ch09:58581273..58591924- go_terms:GO:0006508,GO:0016020 functional_description:"Preprotein translocase secY subunit (AHRD V1 ***- B6U7Q0_MAIZE); contains Interpro domain(s) IPR002208 SecY protein "; GO:0006508,GO:0016020 NbS00025053g0002.1 protein AED:0.16 eAED:0.18 QI:18|0|0.5|1|0|0.5|2|1264|72; (*GB) gi|388497192|gb|AFK36662.1| (e_value=1e-34) unknown [Medicago truncatula];; (*TAIR) AT2G31490.1 (e_value=1e-36) | Symbols: | unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13412060-13413002 FORWARD LENGTH=71;; (*ITAG) Solyc05g046390.2.1 (e_value=2e-33) genomic_reference:SL2.40ch05 gene_region:57965282-57966565 transcript_region:SL2.40ch05:57965282..57966565- functional_description:"Unknown Protein (AHRD V1)"; NbS00015434g0005.1 protein AED:0.53 eAED:0.64 QI:0|0|0|1|1|1|2|0|95; (*GB) gi|225454868|ref|XP_002278482.1| (e_value=9e-23) PREDICTED: uncharacterized protein LOC100256179 [Vitis vinifera];; (*ITAG) Solyc07g052920.2.1 (e_value=9e-38) genomic_reference:SL2.40ch07 gene_region:58646169-58647773 transcript_region:SL2.40ch07:58646169..58647773+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015434g0007.1 protein AED:0.04 eAED:0.09 QI:0|0|0|1|0|0|2|0|397; (*GB) gi|357453543|ref|XP_003597049.1| (e_value=2e-15) Transcription factor bHLH117 [Medicago truncatula];; (*ITAG) Solyc07g052930.2.1 (e_value=5e-103) genomic_reference:SL2.40ch07 gene_region:58648332-58650234 transcript_region:SL2.40ch07:58648332..58650234- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *-*- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00038712g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|214; (*GB) gi|255566524|ref|XP_002524247.1| (e_value=3e-136) protein with unknown function [Ricinus communis];; (*SWP) sp|Q39434|RB2BV_BETVU (e_value=5e-133) Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=7e-132) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc03g079900.2.1 (e_value=7e-155) genomic_reference:SL2.40ch03 gene_region:45334174-45335900 transcript_region:SL2.40ch03:45334174..45335900+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00038712g0007.1 protein AED:0.14 eAED:0.19 QI:84|1|0.81|1|0.7|0.81|11|0|477; (*GB) gi|255566514|ref|XP_002524242.1| (e_value=0.0) zinc ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=0.0) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=0.0) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc03g079910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45336512-45340788 transcript_region:SL2.40ch03:45336512..45340788- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00004503g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0|0.75|1|1|4|0|187; (*GB) gi|224077680|ref|XP_002305359.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LF41|UBE4_ARATH (e_value=6e-68) Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1;; (*TAIR) AT5G15400.1 (e_value=4e-69) | Symbols: | U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038;; (*ITAG) Solyc02g088550.2.1 (e_value=2e-93) genomic_reference:SL2.40ch02 gene_region:45173929-45183799 transcript_region:SL2.40ch02:45173929..45183799- go_terms:GO:0000151 functional_description:"Ubiquitin conjugation factor E4 A (AHRD V1 ***- B0W2D1_CULQU); contains Interpro domain(s) IPR019474 Ubiquitin conjugation factor E4, core "; GO:0000151 NbS00004503g0009.1 protein AED:0.12 eAED:0.12 QI:517|1|1|1|0.4|0.5|6|482|260; (*GB) gi|255584325|ref|XP_002532898.1| (e_value=1e-147) rRNA methylase, putative [Ricinus communis];; (*SWP) sp|O67577|TRMH_AQUAE (e_value=1e-28) tRNA (guanosine(18)-2'-O)-methyltransferase OS=Aquifex aeolicus (strain VF5) GN=trmH PE=1 SV=1;; (*TAIR) AT5G15390.1 (e_value=3e-138) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr5:4995333-4997255 FORWARD LENGTH=350;; (*ITAG) Solyc02g088540.2.1 (e_value=3e-167) genomic_reference:SL2.40ch02 gene_region:45170430-45173503 transcript_region:SL2.40ch02:45170430..45173503+ go_terms:GO:0006396 functional_description:"tRNA guanosine-2&apos-O-methyltransferase (AHRD V1 *-*- B9L1B3_THERP); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00011308g0003.1 protein AED:0.34 eAED:0.34 QI:103|1|1|1|0.75|0.6|5|272|181; (*GB) gi|224118090|ref|XP_002331555.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|P12617|DCMC_ANSAN (e_value=7e-33) Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser GN=MLYCD PE=1 SV=2;; (*TAIR) AT4G04320.2 (e_value=3e-62) | Symbols: | malonyl-CoA decarboxylase family protein | chr4:2113565-2116525 FORWARD LENGTH=517;; (*ITAG) Solyc02g036290.2.1 (e_value=2e-49) genomic_reference:SL2.40ch02 gene_region:21192517-21197520 transcript_region:SL2.40ch02:21192517..21197520- go_terms:GO:0006633 functional_description:"Malonyl-CoA decarboxylase like protein (AHRD V1 ***- Q7Y1Z8_ARATH); contains Interpro domain(s) IPR007956 Malonyl-CoA decarboxylase "; GO:0006633 NbS00012308g0002.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|0|0|2|684|209; (*GB) gi|224078874|ref|XP_002305661.1| (e_value=2e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S9T7|VP282_ARATH (e_value=8e-119) Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2;; (*TAIR) AT4G05000.2 (e_value=6e-120) | Symbols: VPS28-1 | Vacuolar protein sorting-associated protein VPS28 family protein | chr4:2563953-2564585 FORWARD LENGTH=210;; (*ITAG) Solyc02g080270.2.1 (e_value=4e-127) genomic_reference:SL2.40ch02 gene_region:39121853-39125587 transcript_region:SL2.40ch02:39121853..39125587- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 28 family protein (AHRD V1 ***- D7MES4_ARALY); contains Interpro domain(s) IPR007143 Vacuolar protein sorting-associated, VPS28 "; GO:0005515 NbS00012308g0015.1 protein AED:0.08 eAED:0.08 QI:204|1|1|1|1|1|4|744|515; (*GB) gi|37992755|gb|AAR06584.1| (e_value=0.0) glycinamide ribonucleotide synthetase [Nicotiana tabacum];; (*SWP) sp|P52420|PUR2_ARATH (e_value=0.0) Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2;; (*TAIR) AT1G09830.1 (e_value=0.0) | Symbols: | Glycinamide ribonucleotide (GAR) synthetase | chr1:3192783-3194936 REVERSE LENGTH=532;; (*ITAG) Solyc01g103440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83817098-83820931 transcript_region:SL2.40ch01:83817098..83820931+ go_terms:GO:0009113,GO:0005524 functional_description:"Phosphoribosylamine--glycine ligase (AHRD V1 ***- D7KJV0_ARALY); contains Interpro domain(s) IPR000115 Phosphoribosylglycinamide synthetase "; GO:0009113,GO:0005524 NbS00012308g0013.1 protein AED:0.15 eAED:0.15 QI:2493|1|1|1|0.85|0.75|8|446|390; (*GB) gi|255554957|ref|XP_002518516.1| (e_value=0.0) beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|O80690|BGL46_ARATH (e_value=1e-156) Beta-glucosidase 46 OS=Arabidopsis thaliana GN=BGLU46 PE=1 SV=2;; (*TAIR) AT1G61820.1 (e_value=1e-157) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22835452-22838444 FORWARD LENGTH=516;; (*ITAG) Solyc02g080290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39132007-39135756 transcript_region:SL2.40ch02:39132007..39135756+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00047386g0005.1 protein AED:0.10 eAED:0.10 QI:448|0.7|0.54|1|0.5|0.45|11|0|875; (*GB) gi|359481238|ref|XP_002266958.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258499 [Vitis vinifera];; (*TAIR) AT3G51620.2 (e_value=0.0) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc09g018160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:13379149-13391907 transcript_region:SL2.40ch09:13379149..13391907+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00011198g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.66|1|1|3|0|291; (*GB) gi|224107845|ref|XP_002314622.1| (e_value=3e-112) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10380.1 (e_value=3e-84) | Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305;; (*ITAG) Solyc05g006700.2.1 (e_value=3e-148) genomic_reference:SL2.40ch05 gene_region:1366839-1367894 transcript_region:SL2.40ch05:1366839..1367894- functional_description:"Wall-associated receptor kinase-like 20 (AHRD V1 *--- WAKLQ_ARATH)"; NbS00007430g0001.1 protein AED:0.35 eAED:0.70 QI:43|0|0.5|1|0|0|2|115|25 NbS00016396g0010.1 protein AED:0.02 eAED:0.02 QI:121|0.8|0.83|1|0.8|0.83|6|265|402; (*GB) gi|224105809|ref|XP_002313938.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G14530.1 (e_value=0.0) | Symbols: TBL13 | TRICHOME BIREFRINGENCE-LIKE 13 | chr2:6187484-6190137 FORWARD LENGTH=412;; (*ITAG) Solyc01g106590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86172853-86178259 transcript_region:SL2.40ch01:86172853..86178259+ functional_description:"Leaf senescence protein-like (AHRD V1 **-- Q8H2I6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00016396g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|130846|sp|P11670.1|PRB1_TOBAC (e_value=9e-122) RecName: Full=Basic form of pathogenesis-related protein 1; Short=PRP 1; Flags: Precursor;; (*SWP) sp|P11670|PRB1_TOBAC (e_value=3e-123) Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT4G33720.1 (e_value=7e-68) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=6e-105) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00016396g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|688429|dbj|BAA05473.1| (e_value=4e-78) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|Q04108|PR04_SOLLC (e_value=2e-56) Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G14610.1 (e_value=2e-54) | Symbols: PR1, PR 1, ATPR1 | pathogenesis-related gene 1 | chr2:6241944-6242429 REVERSE LENGTH=161;; (*ITAG) Solyc01g106600.2.1 (e_value=8e-95) genomic_reference:SL2.40ch01 gene_region:86179328-86180087 transcript_region:SL2.40ch01:86179328..86180087+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1 (AHRD V1 **-- D2XZ57_9ROSI); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005515 NbS00016396g0009.1 protein AED:0.22 eAED:0.22 QI:209|1|1|1|0.83|0.71|7|286|260; (*GB) gi|359475519|ref|XP_002269364.2| (e_value=6e-131) PREDICTED: uncharacterized protein At3g49720-like [Vitis vinifera];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=5e-124) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT5G65810.1 (e_value=4e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26337833-26339144 REVERSE LENGTH=258;; (*ITAG) Solyc01g106580.2.1 (e_value=5e-162) genomic_reference:SL2.40ch01 gene_region:86167327-86172323 transcript_region:SL2.40ch01:86167327..86172323+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040305g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|174 NbS00003734g0110.1 protein AED:0.02 eAED:0.02 QI:76|1|1|1|0|0.5|2|283|95 NbS00003734g0112.1 protein AED:0.12 eAED:0.12 QI:396|1|1|1|0.14|0.37|8|534|302 NbS00003734g0101.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|217 NbS00003734g0111.1 protein AED:0.17 eAED:0.17 QI:183|1|1|1|1|1|3|205|291 NbS00002664g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0.5|0.33|3|0|263; (*GB) gi|359485862|ref|XP_002264076.2| (e_value=1e-67) PREDICTED: probable glycosyltransferase At5g03795-like [Vitis vinifera];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=5e-34) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT3G07620.1 (e_value=4e-35) | Symbols: | Exostosin family protein | chr3:2433267-2434988 REVERSE LENGTH=470;; (*ITAG) Solyc05g016320.1.1 (e_value=8e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:15551119-15553856 transcript_region:SL2.40ch05:15551119..15553856- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LPB7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00002664g0013.1 protein AED:0.40 eAED:0.59 QI:0|0|0|1|0.33|0.5|4|0|103; (*GB) gi|310813975|gb|ADP30799.1| (e_value=3e-32) nicotine uptake permease 2 [Nicotiana tabacum];; (*SWP) sp|Q9FZ96|PUP1_ARATH (e_value=3e-17) Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1;; (*TAIR) AT1G28230.1 (e_value=2e-18) | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862200-9864554 REVERSE LENGTH=356;; (*ITAG) Solyc12g087880.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61816214-61817684 transcript_region:SL2.40ch12:61816214..61817684+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00002664g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|0|0|3|0|180; (*GB) gi|310813975|gb|ADP30799.1| (e_value=2e-73) nicotine uptake permease 2 [Nicotiana tabacum];; (*SWP) sp|Q9FZ96|PUP1_ARATH (e_value=8e-43) Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1;; (*TAIR) AT1G28230.1 (e_value=6e-44) | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862200-9864554 REVERSE LENGTH=356;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00002664g0012.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|264; (*GB) gi|310813973|gb|ADP30798.1| (e_value=2e-116) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=5e-59) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=4e-60) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00002664g0010.1 protein AED:0.42 eAED:0.56 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|310813975|gb|ADP30799.1| (e_value=5e-17) nicotine uptake permease 2 [Nicotiana tabacum]; NbS00000416g0009.1 protein AED:0.27 eAED:0.29 QI:142|0.85|0.76|1|0.55|0.57|21|41|625; (*GB) gi|255554561|ref|XP_002518319.1| (e_value=0.0) glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=0.0) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=0.0) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86019080-86030855 transcript_region:SL2.40ch01:86019080..86030855+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- Q5L059_GEOKA); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00006600g0014.1 protein AED:0.14 eAED:0.17 QI:795|0.69|0.57|1|0.38|0.28|14|282|203; (*GB) gi|255545806|ref|XP_002513963.1| (e_value=9e-30) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q13823|NOG2_HUMAN (e_value=2e-13) Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1;; (*TAIR) AT1G22460.1 (e_value=4e-29) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=1e-33) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00006600g0009.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.25|1|1|4|0|69 NbS00006600g0015.1 protein AED:0.16 eAED:0.20 QI:0|0.33|0|1|0.33|0.25|4|0|632; (*GB) gi|255543675|ref|XP_002512900.1| (e_value=0.0) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=5e-126) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=4e-127) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g009240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00006600g0016.1 protein AED:0.36 eAED:0.36 QI:165|1|0.5|1|0|0.5|2|0|201; (*GB) gi|255543675|ref|XP_002512900.1| (e_value=8e-30) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SUQ7|CHX17_ARATH (e_value=6e-13) Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1;; (*TAIR) AT4G23700.1 (e_value=5e-14) | Symbols: ATCHX17, CHX17 | cation/H+ exchanger 17 | chr4:12342534-12345616 REVERSE LENGTH=820;; (*ITAG) Solyc06g009240.2.1 (e_value=3e-75) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00032900g0007.1 protein AED:0.01 eAED:0.01 QI:66|1|1|1|0.5|0.66|3|169|125; (*GB) gi|357483401|ref|XP_003611987.1| (e_value=2e-26) hypothetical protein MTR_5g020060 [Medicago truncatula];; (*TAIR) AT5G66780.1 (e_value=6e-25) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26663627-26664196 FORWARD LENGTH=121;; (*ITAG) Solyc02g062770.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29127828-29129196 transcript_region:SL2.40ch02:29127828..29129196- functional_description:"Late embryogenesis abundant protein (AHRD V1 *-*- Q3I3Y9_PICGL)"; NbS00032900g0006.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.4|0|0|5|0|140 NbS00007736g0001.1 protein AED:0.31 eAED:0.31 QI:0|1|0.33|1|1|1|3|0|194; (*GB) gi|224141911|ref|XP_002324304.1| (e_value=4e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|O49377|VA711_ARATH (e_value=3e-124) Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2;; (*TAIR) AT4G32150.1 (e_value=2e-125) | Symbols: VAMP711, ATVAMP711 | vesicle-associated membrane protein 711 | chr4:15526407-15527651 REVERSE LENGTH=219;; (*ITAG) Solyc06g065950.2.1 (e_value=8e-134) genomic_reference:SL2.40ch06 gene_region:37723806-37727182 transcript_region:SL2.40ch06:37723806..37727182- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7C (AHRD V1 **-- D7MAR2_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00036438g0004.1 protein AED:0.19 eAED:0.22 QI:0|0.25|0|0.6|0.75|0.4|5|0|762; (*GB) gi|337273025|gb|AEI70250.1| (e_value=0.0) auxin response factor 10 [Solanum lycopersicum];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT2G28350.1 (e_value=0.0) | Symbols: ARF10 | auxin response factor 10 | chr2:12114331-12116665 FORWARD LENGTH=693;; (*ITAG) Solyc11g069500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51188434-51191569 transcript_region:SL2.40ch11:51188434..51191569- go_terms:GO:0046982,GO:0005516 functional_description:"Auxin response factor 16 (AHRD V1 ***- D9IVB4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046982,GO:0005516 NbS00035662g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|5|448|338; (*GB) gi|225430105|ref|XP_002284618.1| (e_value=1e-140) PREDICTED: syntaxin-32 [Vitis vinifera];; (*SWP) sp|Q9LK09|SYP32_ARATH (e_value=3e-105) Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1;; (*TAIR) AT3G24350.1 (e_value=2e-106) | Symbols: SYP32, ATSYP32 | syntaxin of plants 32 | chr3:8837733-8839402 FORWARD LENGTH=347;; (*ITAG) Solyc08g067910.2.1 (e_value=3e-174) genomic_reference:SL2.40ch08 gene_region:54158711-54167363 transcript_region:SL2.40ch08:54158711..54167363- go_terms:GO:0005484 functional_description:"Syntaxin 32 (AHRD V1 ***- B6TET0_MAIZE); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00040193g0008.1 protein AED:0.14 eAED:0.14 QI:411|0.90|0.91|1|0.63|0.58|12|96|694; (*GB) gi|359494388|ref|XP_002267637.2| (e_value=0.0) PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=0.0) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT1G53590.1 (e_value=0.0) | Symbols: NTMC2TYPE6.1, NTMC2T6.1 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751;; (*ITAG) Solyc12g011420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4244827-4251000 transcript_region:SL2.40ch12:4244827..4251000- go_terms:GO:0006520 functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- D7L359_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0006520 NbS00040193g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|147840314|emb|CAN70691.1| (e_value=4e-13) hypothetical protein VITISV_007578 [Vitis vinifera];; (*ITAG) Solyc07g061890.1.1 (e_value=3e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62000405-62000956 transcript_region:SL2.40ch07:62000405..62000956+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037003g0004.1 protein AED:0.22 eAED:0.22 QI:118|0.84|0.85|1|0.69|0.71|14|264|419; (*GB) gi|255544942|ref|XP_002513532.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G50450.1 (e_value=0.0) | Symbols: | Saccharopine dehydrogenase | chr1:18687902-18690348 REVERSE LENGTH=428;; (*ITAG) Solyc11g065240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47693585-47702912 transcript_region:SL2.40ch11:47693585..47702912+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase family protein expressed (AHRD V1 ***- Q2QY08_ORYSJ); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00024257g0012.1 protein AED:0.21 eAED:0.30 QI:0|0.25|0.2|1|0.5|0.4|5|415|129; (*GB) gi|118486469|gb|ABK95074.1| (e_value=6e-36) unknown [Populus trichocarpa];; (*TAIR) AT3G56900.1 (e_value=8e-35) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:21066330-21069343 FORWARD LENGTH=447; NbS00024257g0015.1 protein AED:0.38 eAED:0.38 QI:90|0.77|0.6|1|0.44|0.5|10|0|324; (*GB) gi|225440260|ref|XP_002283996.1| (e_value=5e-147) PREDICTED: aladin-like [Vitis vinifera];; (*SWP) sp|P58742|AAAS_MOUSE (e_value=1e-14) Aladin OS=Mus musculus GN=Aaas PE=1 SV=1;; (*TAIR) AT3G56900.1 (e_value=1e-136) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:21066330-21069343 FORWARD LENGTH=447;; (*ITAG) Solyc08g036600.1.1 (e_value=4e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:25829313-25829921 transcript_region:SL2.40ch08:25829313..25829921- functional_description:"Cytochrome cd1-nitrite reductase-like C-terminal haem d1 (AHRD V1 **-- Q2HUV6_MEDTR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00033848g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.87|0.77|1|1|1|9|304|373; (*GB) gi|224127468|ref|XP_002329285.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O35678|MGLL_MOUSE (e_value=2e-29) Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1;; (*TAIR) AT5G16120.2 (e_value=3e-177) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5265820-5267775 FORWARD LENGTH=369;; (*ITAG) Solyc02g063160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29811816-29817553 transcript_region:SL2.40ch02:29811816..29817553+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9LF16_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00012214g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|382; (*GB) gi|16973300|emb|CAC82911.1| (e_value=0.0) allene oxide synthase [Nicotiana attenuata];; (*SWP) sp|Q96242|CP74A_ARATH (e_value=1e-166) Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3;; (*TAIR) AT5G42650.1 (e_value=9e-168) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc11g069800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51512528-51514060 transcript_region:SL2.40ch11:51512528..51514060- go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00060241g0002.1 protein AED:0.54 eAED:0.54 QI:2|0|0|0.33|1|0.66|3|0|335; (*GB) gi|356573785|ref|XP_003555036.1| (e_value=4e-15) PREDICTED: uncharacterized protein LOC100797980 [Glycine max]; NbS00002213g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.78|0.8|15|247|829; (*GB) gi|255544856|ref|XP_002513489.1| (e_value=0.0) origin recognition complex subunit, putative [Ricinus communis];; (*SWP) sp|O16810|ORC1_DROME (e_value=2e-91) Origin recognition complex subunit 1 OS=Drosophila melanogaster GN=Orc1 PE=1 SV=2;; (*TAIR) AT4G14700.1 (e_value=0.0) | Symbols: ATORC1A, ORC1A | origin recognition complex 1 | chr4:8422236-8424665 FORWARD LENGTH=809;; (*ITAG) Solyc03g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1013878-1021515 transcript_region:SL2.40ch03:1013878..1021515- go_terms:GO:0010385 functional_description:"Origin recognition complex subunit 1 (AHRD V1 **-- Q945C8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0010385 NbS00035275g0005.1 protein AED:0.35 eAED:0.40 QI:73|0.5|0.6|1|0.5|0.4|5|290|137; (*GB) gi|125584853|gb|EAZ25517.1| (e_value=2e-69) hypothetical protein OsJ_09341 [Oryza sativa Japonica Group];; (*SWP) sp|Q07760|RL23_TOBAC (e_value=5e-68) 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1;; (*TAIR) AT3G04400.1 (e_value=1e-68) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=5e-70) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00027717g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|60 NbS00024579g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.5|1|0.71|0.75|8|0|558; (*GB) gi|225439418|ref|XP_002264564.1| (e_value=0.0) PREDICTED: calcium-dependent protein kinase 13 [Vitis vinifera];; (*SWP) sp|Q8W4I7|CDPKD_ARATH (e_value=0.0) Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2;; (*TAIR) AT3G51850.1 (e_value=0.0) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528;; (*ITAG) Solyc09g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:369215-377428 transcript_region:SL2.40ch09:369215..377428- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 13 (AHRD V1 **** B9IGA3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00023529g0012.1 protein AED:0.12 eAED:0.12 QI:81|0.5|0.33|1|1|1|3|0|74 NbS00023529g0011.1 protein AED:0.19 eAED:0.22 QI:0|0.71|0.5|1|0.28|0.5|8|0|248; (*GB) gi|359485045|ref|XP_002277405.2| (e_value=1e-119) PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Vitis vinifera];; (*SWP) sp|Q94CG0|CIPKL_ARATH (e_value=3e-98) CBL-interacting serine/threonine-protein kinase 21 OS=Arabidopsis thaliana GN=CIPK21 PE=1 SV=1;; (*TAIR) AT5G57630.1 (e_value=2e-99) | Symbols: CIPK21, SnRK3.4 | CBL-interacting protein kinase 21 | chr5:23341092-23343143 REVERSE LENGTH=416;; (*ITAG) Solyc02g021440.2.1 (e_value=9e-95) genomic_reference:SL2.40ch02 gene_region:13422223-13429172 transcript_region:SL2.40ch02:13422223..13429172- go_terms:GO:0004691 functional_description:"CBL-interacting protein kinase 04 (AHRD V1 **** A5BQ82_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00023529g0010.1 protein AED:0.11 eAED:0.15 QI:20|0.62|0.66|1|0.37|0.55|9|256|305; (*GB) gi|359485064|ref|XP_002271414.2| (e_value=2e-125) PREDICTED: putative lipase ROG1-like [Vitis vinifera];; (*TAIR) AT4G25770.1 (e_value=2e-102) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:13117821-13119982 REVERSE LENGTH=418;; (*ITAG) Solyc07g006690.2.1 (e_value=5e-170) genomic_reference:SL2.40ch07 gene_region:1547767-1557882 transcript_region:SL2.40ch07:1547767..1557882- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbS00001806g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|180; (*GB) gi|356540815|ref|XP_003538880.1| (e_value=1e-31) PREDICTED: thaumatin-like protein 1-like [Glycine max];; (*SWP) sp|P50694|TLP_PRUAV (e_value=9e-18) Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1;; (*TAIR) AT4G36010.2 (e_value=2e-30) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:17039472-17040976 REVERSE LENGTH=301;; (*ITAG) Solyc02g083790.2.1 (e_value=4e-38) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00038127g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|620; (*GB) gi|224117064|ref|XP_002317467.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9MAH4|AB10G_ARATH (e_value=0.0) ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1;; (*TAIR) AT1G53270.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr1:19862878-19864650 FORWARD LENGTH=590;; (*ITAG) Solyc07g062630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62543122-62544987 transcript_region:SL2.40ch07:62543122..62544987- go_terms:GO:0008559 functional_description:"ABC transporter G family member 10 (AHRD V1 ***- AB10G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00038127g0006.1 protein AED:0.25 eAED:0.25 QI:0|1|0.8|1|1|0.8|5|0|370; (*GB) gi|225462205|ref|XP_002268737.1| (e_value=2e-180) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=1e-112) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G16670.1 (e_value=4e-167) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc07g062620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62539520-62542612 transcript_region:SL2.40ch07:62539520..62542612+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6SYF0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00003490g0014.1 protein AED:0.06 eAED:0.12 QI:0|0.71|0.5|1|0.71|0.87|8|621|428; (*GB) gi|225448709|ref|XP_002275322.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(P)+]-like [Vitis vinifera];; (*SWP) sp|C4XLT6|GPDA_DESMR (e_value=6e-65) Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=gpsA PE=3 SV=1;; (*TAIR) AT2G40690.1 (e_value=0.0) | Symbols: GLY1, SFD1 | NAD-dependent glycerol-3-phosphate dehydrogenase family protein | chr2:16974107-16976241 FORWARD LENGTH=420;; (*ITAG) Solyc06g048920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28438391-28441902 transcript_region:SL2.40ch06:28438391..28441902- go_terms:GO:0004367 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** A8IKS4_CHLRE); contains Interpro domain(s) IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004367 NbS00003490g0003.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|1|1|4|0|544; (*GB) gi|297736478|emb|CBI25349.3| (e_value=3e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XJN6|PP197_ARATH (e_value=1e-89) Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=2 SV=1;; (*TAIR) AT2G40720.1 (e_value=9e-91) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:16987269-16989851 FORWARD LENGTH=860;; (*ITAG) Solyc06g048900.1.1 (e_value=6e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28415899-28418451 transcript_region:SL2.40ch06:28415899..28418451- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003490g0016.1 protein AED:0.25 eAED:0.25 QI:199|0.85|0.80|1|0.85|0.80|21|0|744; (*GB) gi|225448715|ref|XP_002280870.1| (e_value=0.0) PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q96KG9|NTKL_HUMAN (e_value=3e-97) N-terminal kinase-like protein OS=Homo sapiens GN=SCYL1 PE=1 SV=1;; (*TAIR) AT2G40730.1 (e_value=0.0) | Symbols: | Protein kinase family protein with ARM repeat domain | chr2:16990083-16996072 REVERSE LENGTH=798;; (*ITAG) Solyc06g048890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28388745-28410623 transcript_region:SL2.40ch06:28388745..28410623+ go_terms:GO:0005515 functional_description:"Protein kinase (AHRD V1 ***- A8HT40_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00011251g0004.1 protein AED:0.14 eAED:0.15 QI:265|0.83|0.76|1|0.5|0.30|13|260|651; (*GB) gi|297827497|ref|XP_002881631.1| (e_value=0.0) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P47082|AVT1_YEAST (e_value=1e-32) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT2G39130.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr2:16323171-16326744 REVERSE LENGTH=550;; (*ITAG) Solyc11g008440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2646308-2649734 transcript_region:SL2.40ch11:2646308..2649734+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter (AHRD V1 **** B9HLH9_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00035404g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.14|0.85|0.33|0.28|7|0|619; (*GB) gi|23429644|gb|AAN10199.1| (e_value=0.0) endoxylanase [Carica papaya];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=4e-21) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33840.1 (e_value=6e-175) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g106990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86446703-86449082 transcript_region:SL2.40ch01:86446703..86449082- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00014410g0001.1 protein AED:0.19 eAED:0.25 QI:0|0|0|1|1|1|3|0|570; (*GB) gi|336169731|gb|AEI25530.1| (e_value=0.0) gibberellic acid insensitive protein [Solanum tuberosum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=0.0) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT1G14920.1 (e_value=0.0) | Symbols: GAI, RGA2 | GRAS family transcription factor family protein | chr1:5149414-5151015 FORWARD LENGTH=533;; (*ITAG) Solyc11g011260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00014410g0007.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|0.5|0.66|3|0|117; (*GB) gi|350538915|ref|NP_001234365.1| (e_value=3e-47) DELLA protein GAI [Solanum lycopersicum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=8e-49) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=1e-40) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=5e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00002094g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|52547872|gb|AAU81956.1| (e_value=2e-108) ERF transcription factor 5 [Nicotiana tabacum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=9e-30) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=7e-31) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc05g051200.1.1 (e_value=6e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60588307-60588981 transcript_region:SL2.40ch05:60588307..60588981- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 *-** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00005624g0002.1 protein AED:0.19 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|507; (*GB) gi|297738882|emb|CBI28127.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93YV6|2A5I_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1;; (*TAIR) AT5G25510.1 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr5:8882728-8884325 REVERSE LENGTH=500;; (*ITAG) Solyc12g006920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1339136-1341924 transcript_region:SL2.40ch12:1339136..1341924- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00005624g0010.1 protein AED:0.30 eAED:0.33 QI:0|0.8|0.66|1|1|0.83|6|0|451; (*GB) gi|380853850|gb|AFE88232.1| (e_value=0.0) acyl ACP-thioesterase [Nicotiana tabacum];; (*SWP) sp|Q39513|FATB_CUPHO (e_value=0.0) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1;; (*TAIR) AT1G08510.1 (e_value=0.0) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc12g006930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1348962-1352431 transcript_region:SL2.40ch12:1348962..1352431- functional_description:"Acyl-ACP thioesterase (AHRD V1 ***- A9XUG5_RICCO); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; NbS00005624g0003.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|1|1|2|0|450; (*GB) gi|356521263|ref|XP_003529276.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100800865 [Glycine max];; (*TAIR) AT1G64260.1 (e_value=4e-12) | Symbols: | MuDR family transposase | chr1:23847756-23849915 FORWARD LENGTH=719;; (*ITAG) Solyc12g006900.1.1 (e_value=3e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1332804-1334528 transcript_region:SL2.40ch12:1332804..1334528+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 **-- Q9SR14_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00010496g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|3|0|567; (*GB) gi|33340517|gb|AAQ14854.1|AF321140_1 (e_value=0.0) S-adenosylmethionine synthase [Nicotiana tabacum];; (*SWP) sp|Q6SYB9|METK2_TOBAC (e_value=0.0) S-adenosylmethionine synthase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1;; (*TAIR) AT2G36880.2 (e_value=0.0) | Symbols: MAT3 | methionine adenosyltransferase 3 | chr2:15479721-15480893 REVERSE LENGTH=390;; (*ITAG) Solyc09g008280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1749950-1751122 transcript_region:SL2.40ch09:1749950..1751122+ go_terms:GO:0004478,GO:0005507 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0004478,GO:0005507 NbS00010496g0003.1 protein AED:0.31 eAED:0.38 QI:608|0|0.5|1|1|1|2|10|59 NbS00014675g0003.1 protein AED:0.12 eAED:0.12 QI:131|1|1|1|0.57|0.62|8|342|119; (*GB) gi|255567339|ref|XP_002524649.1| (e_value=1e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q55G88|PSMG3_DICDI (e_value=8e-18) Proteasome assembly chaperone 3 OS=Dictyostelium discoideum GN=psmG3 PE=3 SV=1;; (*TAIR) AT5G14710.1 (e_value=3e-55) | Symbols: | CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3 (InterPro:IPR018788); Has 120 Blast hits to 120 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr5:4746465-4747776 FORWARD LENGTH=124;; (*ITAG) Solyc02g086780.2.1 (e_value=4e-51) genomic_reference:SL2.40ch02 gene_region:43975823-43976920 transcript_region:SL2.40ch02:43975823..43976920+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018788 Proteasome assembly chaperone 3 "; NbS00020148g0004.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|0|0|2|0|84; (*GB) gi|255549331|ref|XP_002515719.1| (e_value=4e-37) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT4G15240.1 (e_value=2e-35) | Symbols: | Protein of unknown function (DUF604) | chr4:8703518-8705378 REVERSE LENGTH=488;; (*ITAG) Solyc07g052650.1.1 (e_value=4e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58433226-58435409 transcript_region:SL2.40ch07:58433226..58435409+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00020148g0003.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|141; (*GB) gi|255549331|ref|XP_002515719.1| (e_value=4e-29) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*ITAG) Solyc12g005730.1.1 (e_value=7e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:387824-390117 transcript_region:SL2.40ch12:387824..390117- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00062211g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|255549002|ref|XP_002515557.1| (e_value=2e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11420.1 (e_value=5e-84) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc08g067030.2.1 (e_value=2e-108) genomic_reference:SL2.40ch08 gene_region:53144093-53148914 transcript_region:SL2.40ch08:53144093..53148914+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbC26110023g0004.1 protein AED:0.18 eAED:0.18 QI:197|0.33|0.5|1|0.33|0.5|4|0|288; (*GB) gi|1346215|sp|P49332.1|GSTXC_TOBAC (e_value=2e-87) RecName: Full=Probable glutathione S-transferase parC; AltName: Full=Auxin-regulated protein parC;; (*SWP) sp|P49332|GSTXC_TOBAC (e_value=4e-89) Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1;; (*TAIR) AT1G17180.1 (e_value=8e-83) | Symbols: ATGSTU25, GSTU25 | glutathione S-transferase TAU 25 | chr1:5872208-5872958 FORWARD LENGTH=221;; (*ITAG) Solyc10g007640.2.1 (e_value=5e-104) genomic_reference:SL2.40ch10 gene_region:1923371-1924974 transcript_region:SL2.40ch10:1923371..1924974- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** Q8GVD1_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00014505g0004.1 protein AED:0.34 eAED:0.34 QI:115|1|1|1|0.66|0.7|10|335|341; (*GB) gi|350535244|ref|NP_001234440.1| (e_value=0.0) gamma-glutamylhydrolase 2 [Solanum lycopersicum];; (*SWP) sp|O65355|GGH_ARATH (e_value=1e-153) Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2;; (*TAIR) AT1G78680.1 (e_value=8e-155) | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase 2 | chr1:29593933-29596037 FORWARD LENGTH=347;; (*ITAG) Solyc10g007410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1772964-1779740 transcript_region:SL2.40ch10:1772964..1779740- go_terms:GO:0034722 functional_description:"Gamma-glutamyl hydrolase 2 (AHRD V1 **** D7MX15_ARALY); contains Interpro domain(s) IPR015527 Peptidase C26, gamma-glutamyl hydrolase "; GO:0034722 NbS00038554g0002.1 protein AED:0.03 eAED:0.03 QI:45|1|1|1|0|0|2|167|146; (*GB) gi|311893223|dbj|BAJ25783.1| (e_value=2e-92) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=1e-33) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70880.1 (e_value=2e-28) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:26723086-26723717 REVERSE LENGTH=159;; (*ITAG) Solyc04g007760.2.1 (e_value=6e-86) genomic_reference:SL2.40ch04 gene_region:1435905-1437368 transcript_region:SL2.40ch04:1435905..1437368+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00040400g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.28|0.5|0.71|7|0|215; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=7e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00043494g0005.1 protein AED:0.38 eAED:0.38 QI:32|1|0.66|1|1|1|3|122|76 NbC25157863g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|315; (*GB) gi|225436845|ref|XP_002270749.1| (e_value=4e-115) PREDICTED: tankyrase-2-like [Vitis vinifera];; (*SWP) sp|Q9ULJ7|ANR50_HUMAN (e_value=7e-20) Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4;; (*TAIR) AT2G14255.1 (e_value=4e-18) | Symbols: | Ankyrin repeat family protein with DHHC zinc finger domain | chr2:6036974-6040892 FORWARD LENGTH=536;; (*ITAG) Solyc09g074290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61580158-61581582 transcript_region:SL2.40ch09:61580158..61581582- go_terms:GO:0008134 functional_description:"Ankyrin repeat-containing protein (AHRD V1 **-- D3BAQ3_POLPA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00021785g0006.1 protein AED:0.03 eAED:0.03 QI:470|1|0.88|1|1|1|9|331|869; (*GB) gi|147858097|emb|CAN78862.1| (e_value=0.0) hypothetical protein VITISV_021538 [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=0.0) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT4G25160.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr4:12903360-12906669 REVERSE LENGTH=835;; (*ITAG) Solyc03g093450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48185092-48191194 transcript_region:SL2.40ch03:48185092..48191194+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00021785g0007.1 protein AED:0.30 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|358; (*GB) gi|356526387|ref|XP_003531799.1| (e_value=4e-138) PREDICTED: putative kinase-like protein TMKL1-like [Glycine max];; (*SWP) sp|P33543|TMKL1_ARATH (e_value=4e-60) Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1;; (*TAIR) AT5G07620.1 (e_value=3e-119) | Symbols: | Protein kinase superfamily protein | chr5:2407401-2409066 REVERSE LENGTH=359;; (*ITAG) Solyc03g093460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48193374-48195675 transcript_region:SL2.40ch03:48193374..48195675- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW26_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004643g0020.1 protein AED:0.10 eAED:0.10 QI:241|0.8|0.83|1|0.4|0.33|6|256|355; (*GB) gi|225433544|ref|XP_002266835.1| (e_value=7e-128) PREDICTED: transcription factor FAMA [Vitis vinifera];; (*SWP) sp|Q56YJ8|FAMA_ARATH (e_value=4e-107) Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1;; (*TAIR) AT3G24140.1 (e_value=3e-108) | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414;; (*ITAG) Solyc05g053660.1.1 (e_value=2e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62867871-62870213 transcript_region:SL2.40ch05:62867871..62870213+ go_terms:GO:0003700,GO:0016563 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0016563 NbS00004643g0009.1 protein AED:0.19 eAED:0.19 QI:1912|0.71|0.73|1|0.71|0.73|15|220|287; (*GB) gi|147862866|emb|CAN81101.1| (e_value=3e-96) hypothetical protein VITISV_021939 [Vitis vinifera];; (*SWP) sp|Q54JM5|PSMD1_DICDI (e_value=3e-41) 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1;; (*TAIR) AT2G32730.1 (e_value=2e-91) | Symbols: | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880189-13885464 FORWARD LENGTH=1004;; (*ITAG) Solyc09g091750.2.1 (e_value=2e-99) genomic_reference:SL2.40ch09 gene_region:66318786-66327848 transcript_region:SL2.40ch09:66318786..66327848+ go_terms:GO:0032183,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- O48844_ARATH); contains Interpro domain(s) IPR016642 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "; GO:0032183,GO:0004175 NbS00004643g0017.1 protein AED:0.19 eAED:0.20 QI:0|0.64|0.46|1|0.71|0.66|15|0|1138; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc05g053610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62822197-62829504 transcript_region:SL2.40ch05:62822197..62829504- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00050671g0001.1 protein AED:0.38 eAED:0.39 QI:208|0|0.5|1|0|0.5|2|0|112; (*GB) gi|359485819|ref|XP_002269946.2| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100240890 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=2e-32) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc05g040050.1.1 (e_value=7e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00050671g0016.1 protein AED:0.58 eAED:0.60 QI:0|0|0|0.5|0|0.5|2|0|159; (*GB) gi|224129122|ref|XP_002320506.1| (e_value=7e-15) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=1e-13) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=1e-14) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=1e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00050671g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|104 NbS00050671g0012.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|265; (*GB) gi|115802|sp|P27494.1|CB23_TOBAC (e_value=0.0) RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic; AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags: Precursor;; (*SWP) sp|P27494|CB23_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1;; (*TAIR) AT2G05100.1 (e_value=3e-179) | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823449-1824331 REVERSE LENGTH=265;; (*ITAG) Solyc12g006140.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:693217-694582 transcript_region:SL2.40ch12:693217..694582- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 37, chloroplastic (AHRD V1 ***- CB26_PETSP); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00050671g0013.1 protein AED:0.33 eAED:0.33 QI:207|1|1|1|0|0|5|239|126; (*GB) gi|225447590|ref|XP_002272109.1| (e_value=3e-80) PREDICTED: uncharacterized protein LOC100244267 isoform 1 [Vitis vinifera];; (*TAIR) AT3G07760.2 (e_value=3e-78) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2476723-2477947 FORWARD LENGTH=125;; (*ITAG) Solyc12g006160.1.1 (e_value=6e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:705507-710106 transcript_region:SL2.40ch12:705507..710106- functional_description:"Downward leaf curling protein (AHRD V1 ***- B3XZN9_CUCME); contains Interpro domain(s) IPR011510 Sterile alpha motif homology 2 "; NbS00050671g0014.1 protein AED:0.18 eAED:0.27 QI:0|0|0|1|0|0|3|0|464; (*GB) gi|224064844|ref|XP_002301579.1| (e_value=2e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT5G35753.1 (e_value=2e-98) | Symbols: | Domain of unknown function (DUF3444) | chr5:13922569-13924648 REVERSE LENGTH=590;; (*ITAG) Solyc07g047690.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56247177-56249543 transcript_region:SL2.40ch07:56247177..56249543+ go_terms:GO:0006457,GO:0031072 functional_description:"Curved DNA-binding protein (AHRD V1 *--- CBPA_SALCH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00050671g0015.1 protein AED:0.48 eAED:0.84 QI:0|0|0|1|0|0|2|0|84 NbS00022186g0016.1 protein AED:0.01 eAED:0.01 QI:192|1|1|1|0.85|1|8|377|652; (*GB) gi|359480067|ref|XP_002269414.2| (e_value=0.0) PREDICTED: WD repeat-containing protein 70-like [Vitis vinifera];; (*SWP) sp|Q5EB92|WDR70_RAT (e_value=7e-146) WD repeat-containing protein 70 OS=Rattus norvegicus GN=Wdr70 PE=2 SV=1;; (*TAIR) AT2G20330.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8772888-8775518 REVERSE LENGTH=648;; (*ITAG) Solyc06g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1993664-1998920 transcript_region:SL2.40ch06:1993664..1998920- go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 **-- C9SVG1_VERA1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00022186g0015.1 protein AED:0.44 eAED:0.45 QI:0|0|0.33|1|1|0.66|3|11|122; (*GB) gi|255576615|ref|XP_002529198.1| (e_value=3e-52) FLU, putative [Ricinus communis];; (*SWP) sp|Q940U6|FLU_ARATH (e_value=1e-52) Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1;; (*TAIR) AT3G14110.1 (e_value=9e-54) | Symbols: FLU | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4676222-4677602 REVERSE LENGTH=316;; (*ITAG) Solyc06g008160.2.1 (e_value=1e-62) genomic_reference:SL2.40ch06 gene_region:2042760-2050854 transcript_region:SL2.40ch06:2042760..2050854- go_terms:GO:0005488 functional_description:"Chloroplast FLU-like protein (Fragment) (AHRD V1 *--- D2K2R8_PICAB); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022186g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|84 NbS00022186g0017.1 protein AED:0.09 eAED:0.09 QI:215|0.75|1|1|0.75|0.6|5|310|560; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-46) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=1e-138) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00022186g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|81074798|gb|ABB55375.1| (e_value=1e-40) unknown [Solanum tuberosum];; (*SWP) sp|Q9FNC9|TO222_ARATH (e_value=2e-28) Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3;; (*TAIR) AT5G43970.1 (e_value=2e-29) | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase of outer membrane 22-V | chr5:17692888-17693187 FORWARD LENGTH=99;; (*ITAG) Solyc06g008120.1.1 (e_value=3e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:1999546-1999869 transcript_region:SL2.40ch06:1999546..1999869+ functional_description:"Mitochondrial import receptor subunit TOM22 (AHRD V1 *-*- B6U2X6_MAIZE); contains Interpro domain(s) IPR017411 Mitochondrial import receptor, TOM9-2 subunit, plant "; NbS00022186g0018.1 protein AED:0.33 eAED:0.34 QI:0|1|0|1|1|1|3|0|320; (*GB) gi|359480051|ref|XP_002270320.2| (e_value=2e-54) PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera];; (*SWP) sp|Q9FNC7|SUVR2_ARATH (e_value=9e-33) Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2;; (*TAIR) AT5G43990.2 (e_value=7e-34) | Symbols: SUVR2, SDG18 | SET-domain containing protein lysine methyltransferase family protein | chr5:17698454-17701733 FORWARD LENGTH=740;; (*ITAG) Solyc06g008130.2.1 (e_value=2e-140) genomic_reference:SL2.40ch06 gene_region:2012191-2014935 transcript_region:SL2.40ch06:2012191..2014935+ functional_description:"SET domain protein SUVR2 (AHRD V1 ***- D7MN45_ARALY); contains Interpro domain(s) IPR018848 WIYLD domain "; NbS00042862g0006.1 protein AED:0.13 eAED:0.13 QI:7|1|0.87|1|1|1|8|381|533; (*GB) gi|118486445|gb|ABK95062.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8W4H1|GAT26_ARATH (e_value=4e-129) GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1;; (*TAIR) AT4G17570.3 (e_value=6e-135) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514;; (*ITAG) Solyc08g077960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59008791-59015369 transcript_region:SL2.40ch08:59008791..59015369- go_terms:GO:0006355 functional_description:"GATA transcription factor 29 (AHRD V1 *-*- B4FZE9_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00042862g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|380; (*ITAG) Solyc08g077950.1.1 (e_value=2e-101) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:59006972-59008069 transcript_region:SL2.40ch08:59006972..59008069+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039026g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|625; (*GB) gi|5917664|gb|AAD55979.1|AF159296_1 (e_value=0.0) extensin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LJ64|PLRX1_ARATH (e_value=1e-144) Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1;; (*TAIR) AT3G19020.1 (e_value=8e-146) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6559174-6562044 REVERSE LENGTH=956;; (*ITAG) Solyc01g108900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87794102-87796772 transcript_region:SL2.40ch01:87794102..87796772- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00039026g0005.1 protein AED:0.16 eAED:0.16 QI:282|1|1|1|1|1|2|1071|94 NbC26239400g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|86; (*ITAG) Solyc08g044540.1.1 (e_value=7e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:33552497-33552721 transcript_region:SL2.40ch08:33552497..33552721+ functional_description:"Unknown Protein (AHRD V1)"; NbC26239400g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|75; (*ITAG) Solyc08g044540.1.1 (e_value=2e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:33552497-33552721 transcript_region:SL2.40ch08:33552497..33552721+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020195g0004.1 protein AED:0.07 eAED:0.33 QI:0|0|0|0.8|0.25|0.2|5|0|289; (*GB) gi|115476708|ref|NP_001061950.1| (e_value=4e-31) Os08g0451800 [Oryza sativa Japonica Group];; (*TAIR) AT3G53690.1 (e_value=2e-18) | Symbols: | RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320;; (*ITAG) Solyc01g110100.2.1 (e_value=1e-52) genomic_reference:SL2.40ch01 gene_region:88644859-88648051 transcript_region:SL2.40ch01:88644859..88648051+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00005136g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|438; (*GB) gi|357528936|gb|AET80688.1| (e_value=0.0) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=9e-158) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=1e-67) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc11g066640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49494782-49496101 transcript_region:SL2.40ch11:49494782..49496101+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00028286g0005.1 protein AED:0.29 eAED:0.29 QI:183|1|1|1|0.66|0.7|10|319|263; (*GB) gi|82621136|gb|ABB86256.1| (e_value=6e-151) eukaryotic translation initiation factor 2 beta subunit-like [Solanum tuberosum];; (*SWP) sp|O24473|IF2B_WHEAT (e_value=6e-126) Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1;; (*TAIR) AT5G20920.3 (e_value=5e-122) | Symbols: EIF2 BETA | eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=268;; (*ITAG) Solyc06g082580.2.1 (e_value=8e-153) genomic_reference:SL2.40ch06 gene_region:44640508-44646549 transcript_region:SL2.40ch06:44640508..44646549- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 beta subunit-like (AHRD V1 **** Q2V9B2_SOLTU); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0005515,GO:0003743 NbS00022170g0006.1 protein AED:0.06 eAED:0.07 QI:0|0.88|0.9|1|0.66|0.4|10|184|1158; (*GB) gi|359490548|ref|XP_002267012.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267290 [Vitis vinifera];; (*SWP) sp|O94387|YGSA_SCHPO (e_value=4e-47) Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=2 SV=1;; (*TAIR) AT4G05540.1 (e_value=1e-179) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:2818776-2821065 REVERSE LENGTH=689;; (*ITAG) Solyc03g031910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8650616-8654786 transcript_region:SL2.40ch03:8650616..8654786- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00003096g0011.1 protein AED:0.23 eAED:0.24 QI:0|0.66|0.75|1|0.66|0.75|4|0|473; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=0.0) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc01g095770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78720407-78724016 transcript_region:SL2.40ch01:78720407..78724016- go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00003096g0010.1 protein AED:0.29 eAED:0.29 QI:0|0.63|0.58|0.91|0.63|0.66|12|655|329; (*GB) gi|350534638|ref|NP_001234407.1| (e_value=3e-169) SPM1 protein [Solanum lycopersicum];; (*SWP) sp|Q94BN2|SPSY_ARATH (e_value=3e-147) Spermine synthase OS=Arabidopsis thaliana GN=SPMS PE=1 SV=1;; (*TAIR) AT5G53120.5 (e_value=2e-148) | Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359;; (*ITAG) Solyc03g007240.2.1 (e_value=6e-172) genomic_reference:SL2.40ch03 gene_region:1795042-1800986 transcript_region:SL2.40ch03:1795042..1800986- go_terms:GO:0004766 functional_description:"Spermidine synthase 1 (AHRD V1 **** B6TA19_MAIZE); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00053319g0010.1 protein AED:0.06 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|486; (*GB) gi|359492558|ref|XP_003634432.1| (e_value=4e-105) PREDICTED: putative pumilio homolog 7, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LVC3|PUM12_ARATH (e_value=2e-60) Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2;; (*TAIR) AT5G56510.1 (e_value=2e-61) | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=596;; (*ITAG) Solyc04g078210.1.1 (e_value=3e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60602404-60607376 transcript_region:SL2.40ch04:60602404..60607376- go_terms:GO:0003723,GO:0005488 functional_description:"Pumilio (AHRD V1 *-*- Q16M53_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003723,GO:0005488 NbS00053319g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|75164757|sp|Q948Z4.1|SNAK1_SOLTU (e_value=9e-40) RecName: Full=Snakin-1; Flags: Precursor;; (*SWP) sp|Q948Z4|SNAK1_SOLTU (e_value=3e-41) Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1;; (*TAIR) AT2G14900.1 (e_value=2e-26) | Symbols: | Gibberellin-regulated family protein | chr2:6404210-6405043 FORWARD LENGTH=108;; (*ITAG) Solyc04g078200.2.1 (e_value=7e-37) genomic_reference:SL2.40ch04 gene_region:60598399-60599212 transcript_region:SL2.40ch04:60598399..60599212+ functional_description:"Gibberellin-regulated family protein (AHRD V1 **-- D7MT35_ARALY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbC25116922g0003.1 protein AED:0.00 eAED:0.00 QI:83|1|1|1|1|1|3|0|147; (*GB) gi|147857081|emb|CAN83907.1| (e_value=3e-38) hypothetical protein VITISV_035329 [Vitis vinifera];; (*SWP) sp|Q3KTM0|FRO7_ARATH (e_value=7e-28) Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1;; (*TAIR) AT5G49740.1 (e_value=6e-29) | Symbols: ATFRO7, FRO7 | ferric reduction oxidase 7 | chr5:20205549-20208628 REVERSE LENGTH=747;; (*ITAG) Solyc01g102610.2.1 (e_value=3e-59) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00001259g0006.1 protein AED:0.24 eAED:0.24 QI:284|1|0.8|1|0.75|0.8|5|0|220; (*GB) gi|255560189|ref|XP_002521112.1| (e_value=5e-135) Vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|Q9ZTW3|VA721_ARATH (e_value=3e-129) Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1;; (*TAIR) AT1G04750.1 (e_value=2e-130) | Symbols: VAMP7B, VAMP721, ATVAMP721, AT VAMP7B | vesicle-associated membrane protein 721 | chr1:1331857-1333426 REVERSE LENGTH=219;; (*ITAG) Solyc06g083530.2.1 (e_value=5e-143) genomic_reference:SL2.40ch06 gene_region:45210169-45212999 transcript_region:SL2.40ch06:45210169..45212999+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00001259g0009.1 protein AED:0.04 eAED:0.04 QI:128|0.75|0.77|1|0.75|0.88|9|0|318; (*GB) gi|357505379|ref|XP_003622978.1| (e_value=2e-55) Ribonuclease P protein subunit p25 [Medicago truncatula];; (*TAIR) AT3G07030.1 (e_value=4e-54) | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405;; (*ITAG) Solyc06g083540.2.1 (e_value=2e-64) genomic_reference:SL2.40ch06 gene_region:45213604-45216612 transcript_region:SL2.40ch06:45213604..45216612- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00001259g0112.1 protein AED:0.19 eAED:0.36 QI:252|0.42|0.37|1|0.71|0.5|8|0|407 NbS00001259g0118.1 protein AED:0.14 eAED:0.14 QI:45|0.5|0.33|1|0|0|3|0|201 NbS00001259g0107.1 protein AED:0.28 eAED:0.28 QI:192|0.66|0.4|1|1|1|10|0|433 NbS00000996g0003.1 protein AED:0.33 eAED:0.33 QI:84|0.6|0.66|1|0|0|6|366|216; (*GB) gi|224130420|ref|XP_002328604.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUR4|SWT16_ARATH (e_value=2e-59) Bidirectional sugar transporter SWEET16 OS=Arabidopsis thaliana GN=SWEET16 PE=2 SV=1;; (*TAIR) AT3G16690.1 (e_value=1e-60) | Symbols: SWEET16, AtSWEET16 | Nodulin MtN3 family protein | chr3:5684563-5686425 REVERSE LENGTH=230;; (*ITAG) Solyc01g099870.1.1 (e_value=3e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81766289-81768506 transcript_region:SL2.40ch01:81766289..81768506- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00021611g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|84 NbS00021611g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|0.5|2|0|110 NbS00035015g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|0.75|0.33|0.75|4|0|266; (*GB) gi|4239765|emb|CAA06927.1| (e_value=1e-152) putative thaumatin-like protein precursor [Nicotiana tabacum];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=3e-73) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G38670.3 (e_value=1e-103) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18069856-18071227 REVERSE LENGTH=281;; (*ITAG) Solyc01g111320.2.1 (e_value=2e-139) genomic_reference:SL2.40ch01 gene_region:89365944-89369680 transcript_region:SL2.40ch01:89365944..89369680+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00058715g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.71|1|0.83|0.71|7|0|530; (*GB) gi|145666652|gb|ABP88782.1| (e_value=0.0) plastid 1,8-cineol synthase precursor [Nicotiana suaveolens];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=0.0) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25830.1 (e_value=2e-171) | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600;; (*ITAG) Solyc01g105880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00058715g0005.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|73; (*ITAG) Solyc01g105880.2.1 (e_value=7e-15) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00058715g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.66|1|1|1|3|156|113; (*GB) gi|255563310|ref|XP_002522658.1| (e_value=4e-56) Magnesium-dependent phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=1e-16) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1;; (*TAIR) AT2G14110.1 (e_value=4e-55) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:5952005-5953002 FORWARD LENGTH=190;; (*ITAG) Solyc01g105970.2.1 (e_value=2e-73) genomic_reference:SL2.40ch01 gene_region:85731956-85735731 transcript_region:SL2.40ch01:85731956..85735731- go_terms:GO:0000287,GO:0016791 functional_description:"Magnesium-dependent phosphatase-1 family protein expressed (AHRD V1 **** Q84R45_ORYSJ); contains Interpro domain(s) IPR010036 Magnesium-dependent phosphatase-1 "; GO:0000287,GO:0016791 NbC24229801g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|255564357|ref|XP_002523175.1| (e_value=2e-74) Rhicadhesin receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q6K5P9|GL22_ORYSJ (e_value=3e-65) Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1;; (*TAIR) AT5G38940.1 (e_value=1e-59) | Symbols: | RmlC-like cupins superfamily protein | chr5:15588771-15589526 FORWARD LENGTH=223;; (*ITAG) Solyc10g078840.1.1 (e_value=8e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00022463g0001.1 protein AED:0.18 eAED:0.37 QI:0|0.4|0.16|1|0|0|6|0|201; (*GB) gi|224066683|ref|XP_002302179.1| (e_value=6e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=6e-13) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G43650.2 (e_value=2e-31) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:16444526-16446814 REVERSE LENGTH=206;; (*ITAG) Solyc04g071430.1.1 (e_value=2e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55999921-56002819 transcript_region:SL2.40ch04:55999921..56002819+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FGG3_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00045982g0008.1 protein AED:0.07 eAED:0.07 QI:283|1|0.87|1|0.85|0.75|8|298|732; (*GB) gi|255577001|ref|XP_002529385.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1;; (*TAIR) AT5G57940.2 (e_value=0.0) | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated channel 5 | chr5:23457116-23460439 FORWARD LENGTH=717;; (*ITAG) Solyc07g005590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:481459-487527 transcript_region:SL2.40ch07:481459..487527+ go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00045982g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.85|1|1|1|7|0|641; (*GB) gi|225445861|ref|XP_002278700.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q4KLL4|TM9S4_RAT (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT5G10840.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:3424910-3427797 REVERSE LENGTH=648;; (*ITAG) Solyc07g005600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:487667-492520 transcript_region:SL2.40ch07:487667..492520- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00038920g0006.1 protein AED:0.04 eAED:0.04 QI:87|0.5|0.33|0.66|1|1|3|666|264 NbS00038920g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|120 NbS00061820g0001.1 protein AED:0.34 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|77 NbC25943585g0004.1 protein AED:0.42 eAED:0.42 QI:0|1|0.75|1|0.66|0.5|4|24|83; (*GB) gi|359485284|ref|XP_003633254.1| (e_value=7e-55) PREDICTED: ubiquitin-conjugating enzyme E2 36 [Vitis vinifera];; (*SWP) sp|Q9FZ48|UBC36_ARATH (e_value=3e-56) Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1;; (*TAIR) AT1G16890.2 (e_value=2e-57) | Symbols: UBC36, UBC13B | ubiquitin-conjugating enzyme 36 | chr1:5776550-5778327 REVERSE LENGTH=153;; (*ITAG) Solyc10g007260.2.1 (e_value=2e-57) genomic_reference:SL2.40ch10 gene_region:1673007-1678261 transcript_region:SL2.40ch10:1673007..1678261- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00028642g0020.1 protein AED:0.04 eAED:0.04 QI:134|0.66|0.75|1|0.66|0.75|4|437|258; (*GB) gi|255563776|ref|XP_002522889.1| (e_value=2e-129) ammonium transporter, putative [Ricinus communis];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=1e-126) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=2e-104) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc09g065740.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59619493-59622604 transcript_region:SL2.40ch09:59619493..59622604+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00028642g0019.1 protein AED:0.12 eAED:0.14 QI:0|0.77|0.7|1|0.88|0.7|10|0|718; (*GB) gi|225459461|ref|XP_002284379.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 1 [Vitis vinifera];; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT1G21980.1 (e_value=0.0) | Symbols: ATPIP5K1, ATPIPK1, PIP5K1 | phosphatidylinositol-4-phosphate 5-kinase 1 | chr1:7735053-7738309 FORWARD LENGTH=752;; (*ITAG) Solyc04g015470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5671509-5675606 transcript_region:SL2.40ch04:5671509..5675606- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00028642g0017.1 protein AED:0.30 eAED:0.30 QI:153|0.95|0.95|1|0.80|0.90|22|424|692; (*GB) gi|317411670|sp|A5B4D2.1|GUFP_VITVI (e_value=0.0) RecName: Full=Translation factor GUF1 homolog, chloroplastic; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor;; (*SWP) sp|A5B4D2|GUFP_VITVI (e_value=0.0) Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera GN=VITISV_013255 PE=3 SV=1;; (*TAIR) AT5G08650.1 (e_value=0.0) | Symbols: | Small GTP-binding protein | chr5:2806533-2813220 REVERSE LENGTH=681;; (*ITAG) Solyc04g015450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5642257-5658109 transcript_region:SL2.40ch04:5642257..5658109- go_terms:GO:0043022,GO:0003746 functional_description:"GTP-binding protein lepA (AHRD V1 **** A8YK29_MICAE); contains Interpro domain(s) IPR006297 GTP-binding protein LepA "; GO:0043022,GO:0003746 NbS00028642g0014.1 protein AED:0.13 eAED:0.31 QI:0|0|0|1|1|1|2|0|94; (*GB) gi|225435321|ref|XP_002285165.1| (e_value=4e-14) PREDICTED: uncharacterized protein LOC100253658 [Vitis vinifera];; (*ITAG) Solyc11g069450.1.1 (e_value=3e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51115589-51116110 transcript_region:SL2.40ch11:51115589..51116110+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 **-- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00028642g0023.1 protein AED:0.51 eAED:0.51 QI:37|1|0.5|1|0.33|0.25|4|0|88; (*GB) gi|147803371|emb|CAN62247.1| (e_value=2e-38) hypothetical protein VITISV_023344 [Vitis vinifera];; (*TAIR) AT4G33480.1 (e_value=8e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr4:16105804-16108497 REVERSE LENGTH=336;; (*ITAG) Solyc04g015480.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:5684850-5691675 transcript_region:SL2.40ch04:5684850..5691675+ functional_description:"cDNA clone 006-204-H08 full insert sequence (AHRD V1 *-*- B7E442_ORYSJ)"; NbS00000032g0007.1 protein AED:0.03 eAED:0.03 QI:32|0.75|0.6|1|0.25|0.2|5|579|347; (*GB) gi|225439532|ref|XP_002264195.1| (e_value=2e-146) PREDICTED: uncharacterized protein LOC100261884 [Vitis vinifera];; (*TAIR) AT2G38320.1 (e_value=4e-130) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc09g015350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8593157-8598993 transcript_region:SL2.40ch09:8593157..8598993- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002991g0006.1 protein AED:0.23 eAED:0.23 QI:377|1|1|1|0.75|0.77|9|406|357; (*GB) gi|7682432|gb|AAF67262.1|AF165186_1 (e_value=0.0) MAP kinase kinase [Nicotiana tabacum];; (*SWP) sp|Q9S7U9|M2K2_ARATH (e_value=0.0) Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2;; (*TAIR) AT4G29810.1 (e_value=0.0) | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363;; (*ITAG) Solyc12g009020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00002991g0010.1 protein AED:0.15 eAED:0.15 QI:132|0.81|0.91|0.91|0.81|0.66|12|0|480; (*GB) gi|224091216|ref|XP_002309207.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=4e-127) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.1 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=519;; (*ITAG) Solyc12g009010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2309966-2319229 transcript_region:SL2.40ch12:2309966..2319229+ go_terms:GO:0004711 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 **** B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00002991g0003.1 protein AED:0.19 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|350536071|ref|NP_001234228.1| (e_value=0.0) salt responsive protein 2 [Solanum lycopersicum];; (*SWP) sp|Q96MB7|HARB1_HUMAN (e_value=1e-15) Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1;; (*TAIR) AT5G12010.1 (e_value=3e-161) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc12g009000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2301084-2302538 transcript_region:SL2.40ch12:2301084..2302538+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; GO:0016042 NbS00009063g0006.1 protein AED:0.29 eAED:0.29 QI:90|1|0.5|1|1|1|2|153|159 NbS00059064g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.83|0.71|1|0.83|0.85|7|335|466; (*GB) gi|225461754|ref|XP_002285533.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252018 [Vitis vinifera];; (*TAIR) AT1G53450.2 (e_value=1e-163) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14830.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19951747-19953839 REVERSE LENGTH=453;; (*ITAG) Solyc07g062250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62253632-62260099 transcript_region:SL2.40ch07:62253632..62260099- functional_description:"Genomic DNA chromosome 3 BAC clone T21E2 (AHRD V1 ***- Q9LH72_ARATH)"; NbS00051518g0005.1 protein AED:0.16 eAED:0.16 QI:51|1|1|1|0.5|0.57|7|436|287; (*GB) gi|359491270|ref|XP_002283664.2| (e_value=2e-128) PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Vitis vinifera];; (*SWP) sp|A6TXE3|RSMG_ALKMQ (e_value=3e-62) Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmG PE=3 SV=1;; (*TAIR) AT5G50110.1 (e_value=3e-118) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20373515-20376068 FORWARD LENGTH=292;; (*ITAG) Solyc03g113860.1.1 (e_value=9e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57965045-57969229 transcript_region:SL2.40ch03:57965045..57969229- go_terms:GO:0008168 functional_description:"Ribosomal RNA small subunit methyltransferase G (AHRD V1 **** Q2B0Y7_9BACI); contains Interpro domain(s) IPR003682 Glucose inhibited division protein "; GO:0008168 NbS00051518g0004.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|99; (*ITAG) Solyc03g113810.1.1 (e_value=8e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57910242-57910481 transcript_region:SL2.40ch03:57910242..57910481- functional_description:"Unknown Protein (AHRD V1)"; NbS00005100g0009.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0.5|0.33|3|0|689; (*GB) gi|225435458|ref|XP_002285463.1| (e_value=0.0) PREDICTED: nucleolar GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=0.0) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=0.0) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc01g081010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72829845-72833676 transcript_region:SL2.40ch01:72829845..72833676- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00005100g0003.1 protein AED:0.07 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|225459709|ref|XP_002284713.1| (e_value=4e-63) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=4e-55) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=3e-56) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc01g081000.2.1 (e_value=3e-103) genomic_reference:SL2.40ch01 gene_region:72826578-72827678 transcript_region:SL2.40ch01:72826578..72827678- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR010822 Sporulation stage II, protein E C-terminal "; GO:0004722 NbS00022339g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|1408; (*GB) gi|255542460|ref|XP_002512293.1| (e_value=2e-73) Protein FRIGIDA, putative [Ricinus communis];; (*TAIR) AT5G48385.1 (e_value=1e-37) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc01g098240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80581581-80588427 transcript_region:SL2.40ch01:80581581..80588427+ functional_description:"RNA polymerase Rpb1 C-terminal repeat domain-containing protein (AHRD V1 *--- C5GU31_AJEDR); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00022339g0013.1 protein AED:0.06 eAED:0.06 QI:360|1|1|1|1|1|10|442|709; (*GB) gi|359479435|ref|XP_002268537.2| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 12-like [Vitis vinifera];; (*SWP) sp|Q3E7D0|NAT12_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3;; (*TAIR) AT2G27810.1 (e_value=0.0) | Symbols: ATNAT12, NAT12 | nucleobase-ascorbate transporter 12 | chr2:11852338-11855988 FORWARD LENGTH=709;; (*ITAG) Solyc11g066900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49783798-49792281 transcript_region:SL2.40ch11:49783798..49792281- go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-- B9HQT7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00022339g0004.1 protein AED:0.14 eAED:0.22 QI:0|0|0|1|1|1|2|0|563; (*GB) gi|45935146|gb|AAS79604.1| (e_value=0.0) putative pentatricopeptide repeat-containing protein [Ipomoea trifida];; (*SWP) sp|A8MQA3|PP330_ARATH (e_value=7e-130) Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2;; (*TAIR) AT4G21065.1 (e_value=5e-131) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595;; (*ITAG) Solyc11g066920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49802209-49803954 transcript_region:SL2.40ch11:49802209..49803954- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbC23968129g0001.1 protein AED:0.11 eAED:0.48 QI:76|-1|0|1|-1|0|1|0|48; (*GB) gi|255638660|gb|ACU19635.1| (e_value=6e-17) unknown [Glycine max];; (*ITAG) Solyc01g014850.2.1 (e_value=9e-24) genomic_reference:SL2.40ch01 gene_region:15586445-15597388 transcript_region:SL2.40ch01:15586445..15597388- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003700 NbS00009663g0003.1 protein AED:0.31 eAED:0.32 QI:0|1|0|1|1|1|2|0|78; (*GB) gi|233770216|gb|ACQ91181.1| (e_value=1e-41) DRM-type cytosine DNA-methyltransferase [Fragaria x ananassa];; (*SWP) sp|Q9M548|DRM2_ARATH (e_value=3e-34) DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1;; (*TAIR) AT5G14620.1 (e_value=3e-35) | Symbols: DRM2, DMT7 | domains rearranged methyltransferase 2 | chr5:4715429-4718578 REVERSE LENGTH=626;; (*ITAG) Solyc02g062740.2.1 (e_value=3e-41) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00009663g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|59; (*GB) gi|29467228|dbj|BAC67060.1| (e_value=5e-24) DNA methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LXE5|DRM1_ARATH (e_value=2e-18) DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2;; (*TAIR) AT5G15380.1 (e_value=2e-19) | Symbols: DRM1 | domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624;; (*ITAG) Solyc02g062740.2.1 (e_value=5e-26) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00056951g0005.1 protein AED:0.14 eAED:0.14 QI:189|0.8|0.66|1|0.8|0.83|6|172|406; (*GB) gi|224085153|ref|XP_002307509.1| (e_value=1e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=2e-159) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=1e-160) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc04g012030.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4361229-4366187 transcript_region:SL2.40ch04:4361229..4366187+ go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00011244g0001.1 protein AED:0.37 eAED:0.46 QI:305|0.85|0.87|1|0|0.12|8|1036|134 NbS00043836g0002.1 protein AED:0.11 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|147774139|emb|CAN76789.1| (e_value=5e-21) hypothetical protein VITISV_038837 [Vitis vinifera];; (*ITAG) Solyc02g080450.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39240054-39240401 transcript_region:SL2.40ch02:39240054..39240401+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033900g0005.1 protein AED:0.27 eAED:0.28 QI:0|0.62|0.70|0.88|0.68|0.76|17|352|758; (*GB) gi|225465267|ref|XP_002269253.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262667 [Vitis vinifera];; (*TAIR) AT5G49880.1 (e_value=0.0) | Symbols: | mitotic checkpoint family protein | chr5:20282305-20287775 FORWARD LENGTH=726;; (*ITAG) Solyc01g103040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83473073-83485225 transcript_region:SL2.40ch01:83473073..83485225- functional_description:"Mitotic checkpoint protein MAD1 (AHRD V1 *-*- A8JF64_CHLRE); contains Interpro domain(s) IPR008672 Mitotic checkpoint "; NbS00002009g0010.1 protein AED:0.12 eAED:0.12 QI:188|0.6|0.5|1|1|1|6|224|329; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=5e-148) patatin-like protein 3 [Nicotiana tabacum];; (*SWP) sp|Q2MY36|PAT15_SOLTU (e_value=4e-53) Patatin-15 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G37050.1 (e_value=4e-86) | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein 4 | chr4:17457261-17459642 REVERSE LENGTH=428;; (*ITAG) Solyc03g044710.2.1 (e_value=4e-163) genomic_reference:SL2.40ch03 gene_region:14360831-14365498 transcript_region:SL2.40ch03:14360831..14365498+ go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00002009g0009.1 protein AED:0.34 eAED:0.44 QI:0|0.5|0.42|0.85|0.5|0.71|7|0|220; (*GB) gi|168049656|ref|XP_001777278.1| (e_value=2e-85) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q0D4J7|SAPK2_ORYSJ (e_value=2e-86) Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp. japonica GN=SAPK2 PE=1 SV=1;; (*TAIR) AT4G33950.2 (e_value=5e-86) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | Protein kinase superfamily protein | chr4:16272819-16274657 FORWARD LENGTH=314;; (*ITAG) Solyc02g090390.2.1 (e_value=5e-88) genomic_reference:SL2.40ch02 gene_region:46520412-46525986 transcript_region:SL2.40ch02:46520412..46525986- go_terms:GO:0004683 functional_description:"Serine-threonine protein kinase (AHRD V1 **** O24395_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004683 NbS00002009g0113.1 protein AED:0.06 eAED:0.06 QI:70|0.55|0.2|1|0.66|0.6|10|0|1068 NbS00002009g0115.1 protein AED:0.55 eAED:0.55 QI:0|0.12|0|0.22|0.75|0.55|9|0|462 NbS00002009g0114.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|1|0.66|3|0|1384 NbS00033997g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|225462524|ref|XP_002265932.1| (e_value=5e-64) PREDICTED: auxin-induced protein 6B-like [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=2e-15) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G43120.1 (e_value=9e-25) | Symbols: | SAUR-like auxin-responsive protein family | chr3:15094644-15095312 FORWARD LENGTH=160;; (*ITAG) Solyc07g014620.1.1 (e_value=5e-89) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:4983133-4983585 transcript_region:SL2.40ch07:4983133..4983585- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00033997g0007.1 protein AED:0.38 eAED:0.74 QI:0|0|0|0.66|0|0|3|0|164; (*GB) gi|255590603|ref|XP_002535312.1| (e_value=3e-28) 60S ribosomal protein L16, putative [Ricinus communis];; (*SWP) sp|P27754|RT03_OENBE (e_value=5e-15) Ribosomal protein S3, mitochondrial OS=Oenothera berteriana GN=RPS3 PE=3 SV=2;; (*ITAG) ATMG00090.1 (e_value=2e-15) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc11g056400.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43126474-43127657 transcript_region:SL2.40ch11:43126474..43127657+ go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI); contains Interpro domain(s) IPR008282 Ribosomal protein S3, N-terminal "; GO:0005840 NbS00033997g0006.1 protein AED:0.38 eAED:0.54 QI:0|0|0|0.66|0|0|3|0|102; (*GB) gi|357436061|ref|XP_003588306.1| (e_value=1e-40) Ribosomal protein S3 [Medicago truncatula];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-15) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=5e-16) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc05g045910.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:56768351-56769212 transcript_region:SL2.40ch05:56768351..56769212+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- D3GF60_9ROSI)"; NbS00000312g0014.1 protein AED:0.10 eAED:0.10 QI:19|1|0.83|1|1|0.83|6|0|191; (*GB) gi|297737598|emb|CBI26799.3| (e_value=3e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0KWH8|THOC2_CALJA (e_value=5e-19) THO complex subunit 2 OS=Callithrix jacchus GN=THOC2 PE=3 SV=1;; (*TAIR) AT1G24706.2 (e_value=2e-91) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=6e-119) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00000312g0017.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.42|0.85|0.83|0.71|7|6|291; (*GB) gi|359472577|ref|XP_002281541.2| (e_value=1e-110) PREDICTED: THO complex subunit 2-like [Vitis vinifera];; (*SWP) sp|Q8NI27|THOC2_HUMAN (e_value=5e-30) THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2;; (*TAIR) AT1G24706.2 (e_value=1e-97) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=3e-133) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00000312g0012.1 protein AED:0.10 eAED:0.14 QI:0|0.64|0.6|0.93|0.71|0.73|15|281|1300; (*GB) gi|224128774|ref|XP_002328963.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8NI27|THOC2_HUMAN (e_value=1e-50) THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2;; (*TAIR) AT1G24706.2 (e_value=0.0) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00016570g0007.1 protein AED:0.21 eAED:0.21 QI:198|1|0.8|1|0.66|0.6|10|0|343; (*GB) gi|225428977|ref|XP_002264651.1| (e_value=0.0) PREDICTED: zinc finger protein-like 1 [Vitis vinifera];; (*SWP) sp|A8X2R2|ZFPL1_CAEBR (e_value=1e-25) Zinc finger protein-like 1 homolog OS=Caenorhabditis briggsae GN=CBG06644 PE=3 SV=1;; (*TAIR) AT2G14835.2 (e_value=5e-148) | Symbols: | RING/U-box superfamily protein | chr2:6367238-6370610 FORWARD LENGTH=343;; (*ITAG) Solyc01g107150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86522595-86530273 transcript_region:SL2.40ch01:86522595..86530273- functional_description:"Zinc finger protein-like 1 (AHRD V1 ***- B6TBU8_MAIZE)"; NbS00016570g0006.1 protein AED:0.34 eAED:0.43 QI:0|0|0|0.8|0|0|5|0|203; (*ITAG) Solyc03g044840.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00044336g0004.1 protein AED:0.20 eAED:0.20 QI:169|0.77|0.8|0.9|0.55|0.6|10|326|279; (*GB) gi|225439930|ref|XP_002280272.1| (e_value=1e-140) PREDICTED: syntaxin-71 [Vitis vinifera];; (*SWP) sp|Q9SF29|SYP71_ARATH (e_value=1e-122) Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1;; (*TAIR) AT3G09740.1 (e_value=1e-123) | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989615-2991354 FORWARD LENGTH=266;; (*ITAG) Solyc10g084210.1.1 (e_value=1e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63171958-63176335 transcript_region:SL2.40ch10:63171958..63176335- go_terms:GO:0016020 functional_description:"Syntaxin-71 (AHRD V1 ***- C0L7E7_ANNCH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00037063g0001.1 protein AED:0.27 eAED:0.27 QI:4|0.25|0.4|0.4|1|1|5|0|215; (*GB) gi|359485187|ref|XP_002279096.2| (e_value=1e-85) PREDICTED: putative methyltransferase NSUN6-like [Vitis vinifera];; (*TAIR) AT1G06560.1 (e_value=1e-65) | Symbols: | NOL1/NOP2/sun family protein | chr1:2007660-2011824 FORWARD LENGTH=599;; (*ITAG) Solyc07g045070.2.1 (e_value=7e-120) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00057913g0002.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|351727056|ref|NP_001235100.1| (e_value=1e-59) dehydration-responsive element binding protein 5 [Glycine max];; (*SWP) sp|Q9SKT1|ERF53_ARATH (e_value=1e-50) Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1;; (*TAIR) AT2G20880.1 (e_value=1e-51) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:8986053-8987063 FORWARD LENGTH=336;; (*ITAG) Solyc07g054220.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59897642-59898814 transcript_region:SL2.40ch07:59897642..59898814- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbC26126792g0003.1 protein AED:0.07 eAED:0.09 QI:385|0|0.5|1|0|0.5|2|0|345; (*GB) gi|147797454|emb|CAN69165.1| (e_value=1e-19) hypothetical protein VITISV_015325 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=1e-14) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=9e-16) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc03g119580.1.1 (e_value=9e-106) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62190256-62191413 transcript_region:SL2.40ch03:62190256..62191413- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbC26126792g0004.1 protein AED:0.07 eAED:0.10 QI:385|0|0.5|1|0|0.5|2|0|345; (*GB) gi|147797454|emb|CAN69165.1| (e_value=1e-19) hypothetical protein VITISV_015325 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=1e-14) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=9e-16) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc03g119580.1.1 (e_value=9e-106) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62190256-62191413 transcript_region:SL2.40ch03:62190256..62191413- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00060571g0004.1 protein AED:0.30 eAED:0.35 QI:39|1|0.6|1|1|1|5|0|207; (*GB) gi|255576657|ref|XP_002529218.1| (e_value=5e-148) methionine aminopeptidase, putative [Ricinus communis];; (*SWP) sp|Q56Y85|AMP2B_ARATH (e_value=8e-147) Methionine aminopeptidase 2B OS=Arabidopsis thaliana GN=MAP2B PE=2 SV=2;; (*TAIR) AT3G59990.4 (e_value=6e-148) | Symbols: MAP2B | methionine aminopeptidase 2B | chr3:22155921-22158551 REVERSE LENGTH=439;; (*ITAG) Solyc01g006800.2.1 (e_value=6e-154) genomic_reference:SL2.40ch01 gene_region:1367104-1371678 transcript_region:SL2.40ch01:1367104..1371678+ go_terms:GO:0005515,GO:0070006 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9ST99_RICCO); contains Interpro domain(s) IPR002468 Peptidase M24A, methionine aminopeptidase, subfamily 2 "; GO:0005515,GO:0070006 NbS00033208g0107.1 protein AED:0.33 eAED:0.33 QI:40|0.8|0.83|1|0.6|0.66|6|579|342 NbS00033208g0205.1 protein AED:0.28 eAED:0.28 QI:178|1|1|1|0.5|1|3|1125|271 NbS00051163g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0|0.33|3|0|169; (*GB) gi|270267863|gb|ACZ65511.1| (e_value=8e-103) Tap46 [Nicotiana benthamiana];; (*SWP) sp|Q8LDQ4|TAP46_ARATH (e_value=1e-71) PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2;; (*TAIR) AT5G53000.1 (e_value=1e-72) | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405;; (*ITAG) Solyc01g006110.2.1 (e_value=6e-97) genomic_reference:SL2.40ch01 gene_region:766543-772337 transcript_region:SL2.40ch01:766543..772337- go_terms:GO:0008601 functional_description:"PP2A regulatory subunit TAP46 (AHRD V1 **-- B6TVR5_MAIZE); contains Interpro domain(s) IPR007304 TAP42-like protein "; GO:0008601 NbS00001953g0002.1 protein AED:0.08 eAED:0.08 QI:184|1|0.8|1|0.75|0.6|5|0|129; (*GB) gi|225443120|ref|XP_002274979.1| (e_value=4e-47) PREDICTED: OTU domain-containing protein DDB_G0284757 isoform 1 [Vitis vinifera];; (*TAIR) AT3G22260.1 (e_value=6e-48) | Symbols: | Cysteine proteinases superfamily protein | chr3:7871489-7873393 FORWARD LENGTH=240;; (*ITAG) Solyc05g016250.2.1 (e_value=1e-63) genomic_reference:SL2.40ch05 gene_region:15405287-15418394 transcript_region:SL2.40ch05:15405287..15418394- go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6U3W2_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00001953g0107.1 protein AED:0.00 eAED:0.00 QI:171|1|1|1|0|0.5|2|6|309 NbS00054463g0003.1 protein AED:0.15 eAED:0.15 QI:207|1|1|1|0|0.5|2|91|152; (*GB) gi|388508302|gb|AFK42217.1| (e_value=4e-33) unknown [Lotus japonicus];; (*SWP) sp|Q67A25|NCS_THLFG (e_value=5e-18) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*ITAG) Solyc07g005370.2.1 (e_value=6e-76) genomic_reference:SL2.40ch07 gene_region:288360-289609 transcript_region:SL2.40ch07:288360..289609- go_terms:GO:0032259,GO:0009607 functional_description:"Norcoclaurine synthase (AHRD V1 ***- B6E2Z2_PAPSO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0032259,GO:0009607 NbS00003049g0015.1 protein AED:0.24 eAED:0.24 QI:308|0.8|1|1|0.4|0.83|6|210|191; (*ITAG) Solyc08g068840.2.1 (e_value=2e-68) genomic_reference:SL2.40ch08 gene_region:55135933-55140666 transcript_region:SL2.40ch08:55135933..55140666- go_terms:GO:0005634 functional_description:"Transcription factor IIIB 90 kDa subunit (AHRD V1 *-*- TF3B_HUMAN); contains Interpro domain(s) IPR011665 Brf1-like TBP-binding "; GO:0005634 NbS00003049g0012.1 protein AED:0.01 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|365; (*GB) gi|225430539|ref|XP_002285580.1| (e_value=1e-110) PREDICTED: zinc finger CCCH domain-containing protein 18 [Vitis vinifera];; (*SWP) sp|Q6K687|C3H18_ORYSJ (e_value=7e-83) Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1;; (*TAIR) AT2G24830.1 (e_value=3e-73) | Symbols: | zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein | chr2:10576993-10579154 REVERSE LENGTH=497;; (*ITAG) Solyc08g068830.2.1 (e_value=4e-122) genomic_reference:SL2.40ch08 gene_region:55133743-55135662 transcript_region:SL2.40ch08:55133743..55135662+ go_terms:GO:0005622 functional_description:"Zinc finger CCCH-type with G patch domain-containing protein (AHRD V1 *-*- ZGPAT_HUMAN); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00003049g0018.1 protein AED:0.39 eAED:0.47 QI:0|0.75|0.55|1|0.62|0.66|9|206|389; (*GB) gi|296082156|emb|CBI21161.3| (e_value=3e-148) unnamed protein product [Vitis vinifera];; (*SWP) sp|A6QL92|S35F5_BOVIN (e_value=5e-31) Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1;; (*TAIR) AT4G32140.1 (e_value=2e-118) | Symbols: | EamA-like transporter family | chr4:15523037-15525195 REVERSE LENGTH=394;; (*ITAG) Solyc08g021960.2.1 (e_value=4e-112) genomic_reference:SL2.40ch08 gene_region:10360928-10372570 transcript_region:SL2.40ch08:10360928..10372570- go_terms:GO:0005515,GO:0022857 functional_description:"Thiamine-repressible mitochondrial transporter THI74 (AHRD V1 **-* C6HKW5_AJECH)"; GO:0005515,GO:0022857 NbS00031798g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.4|0.16|1|0.6|0.66|6|0|204; (*GB) gi|75207182|sp|Q9SQ57.1|PXG_SESIN (e_value=2e-82) RecName: Full=Peroxygenase; AltName: Full=Caleosin; Short=SiCLO;; (*SWP) sp|Q9SQ57|PXG_SESIN (e_value=6e-84) Peroxygenase OS=Sesamum indicum GN=SOP1 PE=1 SV=1;; (*TAIR) AT5G55240.1 (e_value=3e-72) | Symbols: ATPXG2 | ARABIDOPSIS THALIANA PEROXYGENASE 2 | chr5:22405963-22407158 FORWARD LENGTH=243;; (*ITAG) Solyc12g096930.1.1 (e_value=6e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63988881-63992407 transcript_region:SL2.40ch12:63988881..63992407+ functional_description:"Caleosin (AHRD V1 ***- Q9SQ57_SESIN); contains Interpro domain(s) IPR007736 Caleosin related "; NbS00004018g0010.1 protein AED:0.74 eAED:0.87 QI:0|0|0|0.66|0.6|0.5|6|0|334; (*ITAG) Solyc10g011940.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:4231636-4240028 transcript_region:SL2.40ch10:4231636..4240028- go_terms:GO:0005634,GO:0005524,GO:0008270 functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 ***- D5LXF2_SCHMD); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0005634,GO:0005524,GO:0008270 NbS00004018g0009.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|659; (*GB) gi|215400624|gb|ACJ66297.1| (e_value=0.0) phenylalanine ammonia-lyase 4 [Nicotiana tabacum];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=0.0) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc09g007900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1419041-1422226 transcript_region:SL2.40ch09:1419041..1422226- go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00004018g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|129594|sp|P25872.1|PAL1_TOBAC (e_value=1e-82) RecName: Full=Phenylalanine ammonia-lyase;; (*SWP) sp|P25872|PAL1_TOBAC (e_value=4e-84) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=5e-67) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc09g007920.2.1 (e_value=3e-78) genomic_reference:SL2.40ch09 gene_region:1435451-1440492 transcript_region:SL2.40ch09:1435451..1440492+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00043035g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|111; (*ITAG) Solyc06g011460.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00017858g0007.1 protein AED:0.24 eAED:0.24 QI:21|0.75|0.6|0.8|0.75|1|5|0|157; (*GB) gi|543867|sp|P26360.2|ATPG3_IPOBA (e_value=2e-100) RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P26360|ATPG3_IPOBA (e_value=6e-102) ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2;; (*TAIR) AT2G33040.1 (e_value=6e-99) | Symbols: ATP3 | gamma subunit of Mt ATP synthase | chr2:14018978-14021047 REVERSE LENGTH=325;; (*ITAG) Solyc03g115110.2.1 (e_value=5e-104) genomic_reference:SL2.40ch03 gene_region:58968179-58972603 transcript_region:SL2.40ch03:58968179..58972603- go_terms:GO:0005515 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B9SZS3_RICCO); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0005515 NbS00002508g0007.1 protein AED:0.35 eAED:0.36 QI:0|1|0|1|1|0.5|2|0|94; (*GB) gi|224122858|ref|XP_002330381.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|O81906|B120_ARATH (e_value=1e-35) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=1e-36) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc04g077370.1.1 (e_value=7e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59885297-59888499 transcript_region:SL2.40ch04:59885297..59888499- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00002508g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.81|0.75|1|0.36|0.33|12|105|676; (*GB) gi|224067148|ref|XP_002302379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=8e-14) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT1G58520.1 (e_value=0.0) | Symbols: RXW8 | lipases;hydrolases, acting on ester bonds | chr1:21733543-21738165 FORWARD LENGTH=746;; (*ITAG) Solyc04g077400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59898021-59905315 transcript_region:SL2.40ch04:59898021..59905315- go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00002508g0012.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.66|0.5|0.33|3|0|142 NbS00002508g0011.1 protein AED:0.41 eAED:1.00 QI:29|0|0|1|0|0|2|88|31 NbS00016686g0003.1 protein AED:0.23 eAED:0.25 QI:0|0|0|0.4|0.75|0.6|5|0|410; (*GB) gi|297838529|ref|XP_002887146.1| (e_value=3e-64) Fe-S metabolism associated domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=1e-12) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT1G67810.1 (e_value=1e-65) | Symbols: SUFE2 | sulfur E2 | chr1:25426488-25427264 FORWARD LENGTH=258;; (*ITAG) Solyc05g013710.2.1 (e_value=3e-118) genomic_reference:SL2.40ch05 gene_region:7010701-7013932 transcript_region:SL2.40ch05:7010701..7013932- go_terms:GO:0008047 functional_description:"Cysteine desulfuration protein SufE (AHRD V1 *-*- Q2RNM6_RHORT); contains Interpro domain(s) IPR003808 Fe-S metabolism associated SufE "; GO:0008047 NbS00023219g0003.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|1|1|2|0|624; (*GB) gi|147860004|emb|CAN81045.1| (e_value=0.0) hypothetical protein VITISV_006763 [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=3e-98) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT4G13650.1 (e_value=2e-99) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064;; (*ITAG) Solyc09g015370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:8609967-8612054 transcript_region:SL2.40ch09:8609967..8612054+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00023219g0011.1 protein AED:0.35 eAED:0.35 QI:151|1|1|1|1|1|6|200|179; (*GB) gi|297832482|ref|XP_002884123.1| (e_value=2e-83) 4-phosphopantetheine adenylyltransferase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZPV8|COAD_ARATH (e_value=2e-84) Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana GN=COAD PE=1 SV=1;; (*TAIR) AT2G18250.1 (e_value=2e-85) | Symbols: ATCOAD, COAD | 4-phosphopantetheine adenylyltransferase | chr2:7940025-7941499 FORWARD LENGTH=176;; (*ITAG) Solyc02g062640.2.1 (e_value=2e-100) genomic_reference:SL2.40ch02 gene_region:28962583-28968170 transcript_region:SL2.40ch02:28962583..28968170+ go_terms:GO:0004595 functional_description:"Pantetheine-phosphate adenylyltransferase (AHRD V1 **** A8NED5_COPC7); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004595 NbS00023219g0010.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|1|1|2|0|115; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-11) hypothetical protein [Nicotiana tabacum]; NbS00023219g0013.1 protein AED:0.21 eAED:0.21 QI:339|1|0.71|1|0.83|0.85|7|0|366; (*GB) gi|388507222|gb|AFK41677.1| (e_value=0.0) unknown [Lotus japonicus];; (*SWP) sp|O05235|YUGF_BACSU (e_value=6e-16) Uncharacterized hydrolase yugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1;; (*TAIR) AT4G36530.2 (e_value=5e-177) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17240120-17241770 REVERSE LENGTH=378;; (*ITAG) Solyc02g062610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28904287-28909252 transcript_region:SL2.40ch02:28904287..28909252- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MBG9_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00023219g0016.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.2|1|0.75|0.8|5|0|290; (*GB) gi|82621186|gb|ABB86281.1| (e_value=1e-141) transcription factor APFI-like [Solanum tuberosum];; (*SWP) sp|Q9FWR5|GCA1_ARATH (e_value=5e-125) Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1;; (*TAIR) AT1G19580.1 (e_value=4e-126) | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1 | chr1:6774937-6777092 FORWARD LENGTH=275;; (*ITAG) Solyc02g062600.2.1 (e_value=8e-147) genomic_reference:SL2.40ch02 gene_region:28894721-28902716 transcript_region:SL2.40ch02:28894721..28902716- go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_THETN); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00017847g0007.1 protein AED:0.10 eAED:0.10 QI:547|0.85|0.87|1|1|1|8|203|629; (*GB) gi|16215467|emb|CAC82998.1| (e_value=0.0) calcium-dependent protein kinase 2 [Nicotiana tabacum];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=0.0) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=0.0) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc04g009800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3108503-3114299 transcript_region:SL2.40ch04:3108503..3114299- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q93YF4_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00038365g0003.1 protein AED:0.03 eAED:0.03 QI:3|1|0|1|1|1|2|0|465; (*GB) gi|225460779|ref|XP_002274589.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=2e-53) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=3e-143) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc12g014600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5600467-5603988 transcript_region:SL2.40ch12:5600467..5603988- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00012836g0003.1 protein AED:0.17 eAED:0.17 QI:327|1|1|1|1|1|6|0|329; (*GB) gi|147792925|emb|CAN73197.1| (e_value=2e-126) hypothetical protein VITISV_014078 [Vitis vinifera];; (*TAIR) AT5G55610.1 (e_value=9e-84) | Symbols: | unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22525981-22527858 FORWARD LENGTH=329;; (*ITAG) Solyc04g056610.2.1 (e_value=2e-171) genomic_reference:SL2.40ch04 gene_region:53730127-53737736 transcript_region:SL2.40ch04:53730127..53737736- functional_description:"Genomic DNA chromosome 5 P1 clone MDF20 (AHRD V1 ***- Q9FM77_ARATH)"; NbS00047767g0002.1 protein AED:0.42 eAED:0.46 QI:91|0.33|0.5|0.75|0.66|0.5|4|0|151 NbS00047767g0010.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|0.8|0.5|0.8|5|0|165; (*GB) gi|224074229|ref|XP_002304310.1| (e_value=1e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|P48276|YCF36_CYAPA (e_value=6e-20) Uncharacterized protein ycf36 OS=Cyanophora paradoxa GN=ycf36 PE=3 SV=1;; (*TAIR) AT5G67370.1 (e_value=6e-78) | Symbols: | Protein of unknown function (DUF1230) | chr5:26877667-26879465 REVERSE LENGTH=327;; (*ITAG) Solyc02g092700.2.1 (e_value=4e-82) genomic_reference:SL2.40ch02 gene_region:48271107-48274657 transcript_region:SL2.40ch02:48271107..48274657- functional_description:"Ycf36 protein (AHRD V1 *-*- D4ZSA0_SPIPL); contains Interpro domain(s) IPR009631 Protein of unknown function DUF1230 "; NbS00010992g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|430; (*GB) gi|312837047|dbj|BAJ34929.1| (e_value=1e-162) fasciclin-like arabinogalactan protein [Vitis hybrid cultivar];; (*SWP) sp|O22126|FLA8_ARATH (e_value=1e-151) Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana GN=FLA8 PE=1 SV=1;; (*TAIR) AT2G45470.1 (e_value=8e-153) | Symbols: FLA8, AGP8 | FASCICLIN-like arabinogalactan protein 8 | chr2:18742797-18744059 REVERSE LENGTH=420;; (*ITAG) Solyc01g091530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76909578-76911211 transcript_region:SL2.40ch01:76909578..76911211- go_terms:GO:0005516 functional_description:"Fasciclin-like arabinogalactan protein 13 (AHRD V1 ***- A9XTL8_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005516 NbS00010992g0008.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|1|1|2|0|237; (*GB) gi|225453772|ref|XP_002270342.1| (e_value=2e-83) PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q9H8Y5|ANKZ1_HUMAN (e_value=4e-14) Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1;; (*TAIR) AT1G01930.1 (e_value=7e-68) | Symbols: | zinc finger protein-related | chr1:320041-322809 REVERSE LENGTH=580;; (*ITAG) Solyc01g091510.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00010992g0006.1 protein AED:0.53 eAED:0.69 QI:0|0|0|0.66|1|1|6|0|209; (*ITAG) Solyc01g091510.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00025515g0003.1 protein AED:0.17 eAED:0.21 QI:0|0.6|0.72|1|1|1|11|0|441; (*GB) gi|356515641|ref|XP_003526507.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Glycine max];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc08g066100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51736381-51744102 transcript_region:SL2.40ch08:51736381..51744102- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00042367g0001.1 protein AED:0.03 eAED:0.03 QI:72|0|0.5|1|0|0.5|2|172|130; (*GB) gi|225470636|ref|XP_002266137.1| (e_value=1e-61) PREDICTED: LOB domain-containing protein 6 [Vitis vinifera];; (*SWP) sp|O04479|LBD6_ARATH (e_value=2e-60) LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1;; (*TAIR) AT1G65620.4 (e_value=1e-61) | Symbols: AS2 | Lateral organ boundaries (LOB) domain family protein | chr1:24400146-24400745 FORWARD LENGTH=199;; (*ITAG) Solyc11g008830.1.1 (e_value=2e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3019777-3021109 transcript_region:SL2.40ch11:3019777..3021109+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00013423g0014.1 protein AED:0.17 eAED:0.45 QI:0|1|0.5|1|1|0.5|2|0|92; (*GB) gi|359497161|ref|XP_002270046.2| (e_value=7e-23) PREDICTED: uncharacterized protein LOC100261774 [Vitis vinifera];; (*TAIR) AT3G07400.1 (e_value=9e-20) | Symbols: | lipase class 3 family protein | chr3:2367456-2372238 FORWARD LENGTH=1003;; (*ITAG) Solyc09g056350.2.1 (e_value=1e-35) genomic_reference:SL2.40ch09 gene_region:44381484-44404029 transcript_region:SL2.40ch09:44381484..44404029- go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7L6K1_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00013423g0008.1 protein AED:0.55 eAED:0.60 QI:0|1|0|1|1|0.5|2|0|238; (*GB) gi|224065435|ref|XP_002301816.1| (e_value=8e-86) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07400.1 (e_value=9e-79) | Symbols: | lipase class 3 family protein | chr3:2367456-2372238 FORWARD LENGTH=1003;; (*ITAG) Solyc09g056350.2.1 (e_value=4e-115) genomic_reference:SL2.40ch09 gene_region:44381484-44404029 transcript_region:SL2.40ch09:44381484..44404029- go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7L6K1_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00013423g0009.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|213; (*GB) gi|359806412|ref|NP_001240985.1| (e_value=2e-127) ras-related protein RABA5b-like [Glycine max];; (*SWP) sp|Q9SRS5|RAA5B_ARATH (e_value=5e-125) Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1;; (*TAIR) AT3G07410.1 (e_value=4e-126) | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5B | chr3:2372485-2373482 REVERSE LENGTH=217;; (*ITAG) Solyc09g056340.2.1 (e_value=2e-145) genomic_reference:SL2.40ch09 gene_region:44378803-44381132 transcript_region:SL2.40ch09:44378803..44381132+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00013423g0011.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|43 NbS00004124g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|359481384|ref|XP_002281876.2| (e_value=2e-55) PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera];; (*TAIR) AT2G37030.1 (e_value=1e-45) | Symbols: | SAUR-like auxin-responsive protein family | chr2:15553732-15554106 FORWARD LENGTH=124;; (*ITAG) Solyc09g007970.1.1 (e_value=9e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1453519-1453884 transcript_region:SL2.40ch09:1453519..1453884- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00004124g0018.1 protein AED:0.05 eAED:0.07 QI:0|0.69|0.57|1|0.53|0.71|14|0|1039; (*GB) gi|225440025|ref|XP_002276609.1| (e_value=0.0) PREDICTED: ABC transporter G family member 28-like [Vitis vinifera];; (*SWP) sp|Q9SJK6|WBC30_ARATH (e_value=0.0) Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=3;; (*TAIR) AT2G37010.1 (e_value=0.0) | Symbols: ATNAP12, NAP12 | non-intrinsic ABC protein 12 | chr2:15541720-15546159 FORWARD LENGTH=1082;; (*ITAG) Solyc09g008000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1473632-1485072 transcript_region:SL2.40ch09:1473632..1485072- go_terms:GO:0005215 functional_description:"ABC transporter G family member 28 (AHRD V1 **** AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0005215 NbS00004124g0016.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.66|1|0.62|0.88|9|424|534; (*GB) gi|297741622|emb|CBI32754.3| (e_value=8e-45) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1461588-1472231 transcript_region:SL2.40ch09:1461588..1472231- go_terms:GO:0003677,GO:0045449 functional_description:"Telomere repeat-binding protein 5 (AHRD V1 *-*- TRP5_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00004124g0009.1 protein AED:0.04 eAED:0.11 QI:0|0|0|1|1|1|2|0|82; (*ITAG) Solyc09g007980.1.1 (e_value=2e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:1460784-1461080 transcript_region:SL2.40ch09:1460784..1461080+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004124g0020.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.66|0.83|0.8|1|6|781|447; (*GB) gi|297741627|emb|CBI32759.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=4e-117) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G09830.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:3017199-3018696 FORWARD LENGTH=418;; (*ITAG) Solyc09g008010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1486900-1491959 transcript_region:SL2.40ch09:1486900..1491959+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009683g0001.1 protein AED:0.20 eAED:0.20 QI:257|0.81|0.78|0.95|0.95|0.91|23|0|1212; (*GB) gi|359492479|ref|XP_003634420.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254008 [Vitis vinifera];; (*TAIR) AT4G24610.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | chr4:12700837-12707899 REVERSE LENGTH=1150;; (*ITAG) Solyc04g076100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58646709-58657416 transcript_region:SL2.40ch04:58646709..58657416+ functional_description:"Genomic DNA chromosome 5 P1 clone MNA5 (AHRD V1 **-- Q9FKP6_ARATH)"; NbS00009683g0011.1 protein AED:0.25 eAED:0.25 QI:422|0.83|0.85|1|0.66|0.71|7|199|275; (*GB) gi|225459123|ref|XP_002285695.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100267834 [Vitis vinifera];; (*TAIR) AT5G49710.3 (e_value=6e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:20195561-20197188 FORWARD LENGTH=235;; (*ITAG) Solyc04g076110.2.1 (e_value=4e-90) genomic_reference:SL2.40ch04 gene_region:58658002-58662339 transcript_region:SL2.40ch04:58658002..58662339- functional_description:"Genomic DNA chromosome 5 TAC clone K2I5 (AHRD V1 **-- Q9LTA1_ARATH)"; NbS00008807g0001.1 protein AED:0.17 eAED:0.18 QI:145|0.77|0.8|1|0.88|0.8|10|224|508; (*GB) gi|27544010|dbj|BAC54829.1| (e_value=0.0) vacuolar processing enzyme-2 [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT2G25940.1 (e_value=0.0) | Symbols: ALPHA-VPE, ALPHAVPE | alpha-vacuolar processing enzyme | chr2:11063496-11066020 REVERSE LENGTH=478;; (*ITAG) Solyc12g095910.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63354423-63359472 transcript_region:SL2.40ch12:63354423..63359472+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-3 (AHRD V1 **-- Q852T0_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00010160g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|511; (*GB) gi|85068634|gb|ABC69397.1| (e_value=0.0) CYP71D48v1 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=2e-123) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc06g060190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34539342-34541210 transcript_region:SL2.40ch06:34539342..34541210- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010160g0003.1 protein AED:0.04 eAED:0.34 QI:76|-1|0|1|-1|0|1|0|55; (*ITAG) Solyc03g064040.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:34764792-34765055 transcript_region:SL2.40ch03:34764792..34765055- functional_description:"Unknown Protein (AHRD V1)"; NbS00027069g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|0.5|0.66|3|0|262; (*GB) gi|147819171|emb|CAN69218.1| (e_value=6e-70) hypothetical protein VITISV_012014 [Vitis vinifera];; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=9e-49) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT4G18180.1 (e_value=5e-45) | Symbols: | Pectin lyase-like superfamily protein | chr4:10065626-10067317 FORWARD LENGTH=414;; (*ITAG) Solyc01g066070.2.1 (e_value=2e-131) genomic_reference:SL2.40ch01 gene_region:65436585-65439158 transcript_region:SL2.40ch01:65436585..65439158- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00026212g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|224140575|ref|XP_002323658.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g050370.1.1 (e_value=2e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:29483311-29483865 transcript_region:SL2.40ch06:29483311..29483865+ functional_description:"Unknown Protein (AHRD V1)"; NbS00052591g0007.1 protein AED:0.21 eAED:0.27 QI:0|0.6|0.66|1|0.8|0.83|6|169|439; (*GB) gi|225470185|ref|XP_002268245.1| (e_value=2e-169) PREDICTED: O-glucosyltransferase rumi homolog [Vitis vinifera];; (*SWP) sp|Q8NBL1|PGLT1_HUMAN (e_value=1e-20) Protein O-glucosyltransferase 1 OS=Homo sapiens GN=POGLUT1 PE=1 SV=1;; (*TAIR) AT5G23850.1 (e_value=2e-159) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH=542;; (*ITAG) Solyc01g094390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77659760-77661834 transcript_region:SL2.40ch01:77659760..77661834+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8RT95_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00052591g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|137; (*GB) gi|225454162|ref|XP_002271495.1| (e_value=4e-68) PREDICTED: actin-depolymerizing factor 10 [Vitis vinifera];; (*SWP) sp|Q9LQ81|ADF10_ARATH (e_value=3e-67) Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1;; (*TAIR) AT1G01750.1 (e_value=2e-68) | Symbols: ADF11 | actin depolymerizing factor 11 | chr1:275528-276126 FORWARD LENGTH=140;; (*ITAG) Solyc01g094400.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:77662552-77664208 transcript_region:SL2.40ch01:77662552..77664208- go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00006689g0010.1 protein AED:0.10 eAED:0.11 QI:0|1|0.92|1|1|1|14|0|685; (*GB) gi|359490274|ref|XP_002269873.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis vinifera];; (*SWP) sp|Q41382|RH7_SPIOL (e_value=0.0) DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1;; (*TAIR) AT5G62190.1 (e_value=0.0) | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980542-24983879 REVERSE LENGTH=671;; (*ITAG) Solyc03g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1555122-1560373 transcript_region:SL2.40ch03:1555122..1560373- go_terms:GO:0004004,GO:0017151 functional_description:"ATP-dependent DEAD-box RNA helicase DeaD (AHRD V1 *-** D5SAR5_9MICC); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0017151 NbS00006689g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.66|1|0.5|0.33|3|277|337; (*GB) gi|356529553|ref|XP_003533355.1| (e_value=2e-153) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=6e-102) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=5e-103) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc03g006990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1547206-1548822 transcript_region:SL2.40ch03:1547206..1548822- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006689g0011.1 protein AED:0.28 eAED:0.32 QI:15|0.5|0.2|1|0.75|0.6|5|0|351; (*GB) gi|255539649|ref|XP_002510889.1| (e_value=4e-116) peptidase, putative [Ricinus communis];; (*SWP) sp|P36163|OMA1_YEAST (e_value=2e-27) Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2;; (*TAIR) AT5G51740.1 (e_value=2e-109) | Symbols: | Peptidase family M48 family protein | chr5:21017110-21018987 FORWARD LENGTH=442;; (*ITAG) Solyc03g007000.2.1 (e_value=7e-165) genomic_reference:SL2.40ch03 gene_region:1549030-1554645 transcript_region:SL2.40ch03:1549030..1554645- go_terms:GO:0016020 functional_description:"Peptidase M48 Ste24p (AHRD V1 *-*- D1N2Y3_9BACT); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00035565g0010.1 protein AED:0.09 eAED:0.09 QI:276|0.75|0.77|1|0.62|0.66|9|335|544; (*GB) gi|224094965|ref|XP_002310307.1| (e_value=4e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1D6|RBK1_ARATH (e_value=2e-154) Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1;; (*TAIR) AT5G65530.1 (e_value=2e-161) | Symbols: | Protein kinase superfamily protein | chr5:26190844-26192826 REVERSE LENGTH=456;; (*ITAG) Solyc11g010730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3769620-3777208 transcript_region:SL2.40ch11:3769620..3777208- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00035565g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|359497501|ref|XP_003635542.1| (e_value=6e-72) PREDICTED: uncharacterized protein LOC100854495 [Vitis vinifera];; (*TAIR) AT5G65520.1 (e_value=4e-52) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26189876-26190496 REVERSE LENGTH=206;; (*ITAG) Solyc11g010720.1.1 (e_value=1e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3767979-3768617 transcript_region:SL2.40ch11:3767979..3768617- go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 5 TAC clone K21L13 (AHRD V1 **-- Q9LSM3_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00014081g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|4|70|664; (*GB) gi|225424811|ref|XP_002267941.1| (e_value=5e-160) PREDICTED: microtubule-associated protein SPIRAL2-like [Vitis vinifera];; (*SWP) sp|F4I6M4|SP2L_ARATH (e_value=6e-30) Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1;; (*TAIR) AT1G27210.1 (e_value=2e-115) | Symbols: | ARM repeat superfamily protein | chr1:9455669-9457917 REVERSE LENGTH=625;; (*ITAG) Solyc05g006550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1184571-1188615 transcript_region:SL2.40ch05:1184571..1188615+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00008784g0001.1 protein AED:0.07 eAED:0.09 QI:0|0.66|0.42|1|1|1|7|373|488; (*GB) gi|225454882|ref|XP_002278821.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240785 [Vitis vinifera];; (*TAIR) AT5G51150.1 (e_value=2e-180) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:20789034-20791495 FORWARD LENGTH=531;; (*ITAG) Solyc03g093990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49148853-49155210 transcript_region:SL2.40ch03:49148853..49155210- functional_description:"Hypothetical integral membrane protein conserved (AHRD V1 *-*- B9WBN5_CANDC)"; NbS00032055g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|154 NbS00035083g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.9|0.81|1|0.8|0.81|11|0|323; (*GB) gi|225430912|ref|XP_002276816.1| (e_value=5e-170) PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera];; (*SWP) sp|O80796|VIPP1_ARATH (e_value=6e-152) Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1;; (*TAIR) AT1G65260.1 (e_value=4e-153) | Symbols: PTAC4, VIPP1 | plastid transcriptionally active 4 | chr1:24236329-24240428 FORWARD LENGTH=330;; (*ITAG) Solyc11g008990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3137482-3143897 transcript_region:SL2.40ch11:3137482..3143897- functional_description:"Phage shock protein A PspA (AHRD V1 ***- B7K4B0_CYAP8); contains Interpro domain(s) IPR007157 PspA/IM30 "; NbS00043921g0005.1 protein AED:0.22 eAED:0.23 QI:327|0.76|0.78|1|0.53|0.57|14|398|555; (*GB) gi|225423763|ref|XP_002277216.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera];; (*TAIR) AT1G50120.1 (e_value=2e-178) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:18562302-18566015 FORWARD LENGTH=532;; (*ITAG) Solyc11g019960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9826267-9837968 transcript_region:SL2.40ch11:9826267..9837968- functional_description:"Retrograde Golgi transport protein RGP1 homolog (AHRD V1 *--- RGP1_HUMAN); contains Interpro domain(s) IPR014756 Immunoglobulin E-set "; NbS00012571g0008.1 protein AED:0.22 eAED:0.22 QI:379|1|0.8|1|1|1|5|0|441; (*GB) gi|225447121|ref|XP_002274227.1| (e_value=0.0) PREDICTED: nitrate transporter 1.3-like [Vitis vinifera];; (*SWP) sp|Q9LVE0|PTR33_ARATH (e_value=0.0) Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1;; (*TAIR) AT3G21670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:7626942-7628954 REVERSE LENGTH=590;; (*ITAG) Solyc12g006050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:645791-648040 transcript_region:SL2.40ch12:645791..648040+ go_terms:GO:0016020 functional_description:"Nitrate transporter (AHRD V1 ***- Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00012571g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225447121|ref|XP_002274227.1| (e_value=2e-69) PREDICTED: nitrate transporter 1.3-like [Vitis vinifera];; (*SWP) sp|Q9LVE0|PTR33_ARATH (e_value=1e-59) Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1;; (*TAIR) AT3G21670.1 (e_value=1e-60) | Symbols: | Major facilitator superfamily protein | chr3:7626942-7628954 REVERSE LENGTH=590;; (*ITAG) Solyc12g006050.1.1 (e_value=5e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:645791-648040 transcript_region:SL2.40ch12:645791..648040+ go_terms:GO:0016020 functional_description:"Nitrate transporter (AHRD V1 ***- Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00017148g0013.1 protein AED:0.11 eAED:0.11 QI:315|0.9|1|1|0.5|0.63|11|136|416; (*GB) gi|297737174|emb|CBI26375.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q53389|AMAB2_GEOSE (e_value=1e-73) N-carbamoyl-L-amino acid hydrolase OS=Geobacillus stearothermophilus GN=amaB PE=1 SV=1;; (*TAIR) AT5G43600.1 (e_value=0.0) | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase | chr5:17512651-17515280 FORWARD LENGTH=476;; (*ITAG) Solyc09g083410.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64466144-64472295 transcript_region:SL2.40ch09:64466144..64472295- go_terms:GO:0004848,GO:0047652 functional_description:"Amidase hydantoinase/carbamoylase family protein expressed (AHRD V1 **-- Q2QMN7_ORYSJ); contains Interpro domain(s) IPR010158 Amidase, hydantoinase/carbamoylase "; GO:0004848,GO:0047652 NbS00017148g0012.1 protein AED:0.11 eAED:0.11 QI:300|1|1|1|0.9|0.81|11|357|776; (*GB) gi|359477390|ref|XP_002280477.2| (e_value=0.0) PREDICTED: CWF19-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q28C44|C19L2_XENTR (e_value=3e-60) CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1;; (*TAIR) AT1G56290.1 (e_value=0.0) | Symbols: | CwfJ-like family protein | chr1:21075939-21078608 FORWARD LENGTH=692;; (*ITAG) Solyc09g083420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64474162-64480181 transcript_region:SL2.40ch09:64474162..64480181+ functional_description:"CWF19-like 2 (AHRD V1 *-*- B7TJ18_PIG); contains Interpro domain(s) IPR006768 Protein similar to CwfJ, C-terminal 1 "; NbS00044693g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|286|123; (*GB) gi|356544482|ref|XP_003540679.1| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100785292 [Glycine max];; (*TAIR) AT1G75250.1 (e_value=4e-31) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc01g109690.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88340098-88340346 transcript_region:SL2.40ch01:88340098..88340346- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00044693g0006.1 protein AED:0.50 eAED:0.69 QI:0|0|0|1|1|1|2|0|97 NbS00044693g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|82 NbS00011950g0007.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.75|1|0.66|0.75|4|0|236; (*GB) gi|356534201|ref|XP_003535646.1| (e_value=4e-35) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max];; (*TAIR) AT2G48140.1 (e_value=9e-31) | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687444 FORWARD LENGTH=200;; (*ITAG) Solyc09g082300.2.1 (e_value=4e-102) genomic_reference:SL2.40ch09 gene_region:63468458-63469664 transcript_region:SL2.40ch09:63468458..63469664+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00011950g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|205; (*GB) gi|225432724|ref|XP_002278974.1| (e_value=8e-29) PREDICTED: uncharacterized protein LOC100257872 [Vitis vinifera];; (*TAIR) AT2G48140.2 (e_value=7e-22) | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687157 FORWARD LENGTH=131;; (*ITAG) Solyc09g082290.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:63463131-63465933 transcript_region:SL2.40ch09:63463131..63465933+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00011950g0003.1 protein AED:0.37 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|312146948|gb|ADK12668.1| (e_value=6e-23) emission of benzenoids III [Petunia x hybrida];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=2e-14) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*ITAG) Solyc01g111500.2.1 (e_value=9e-19) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00034707g0020.1 protein AED:0.24 eAED:0.24 QI:160|0.75|0.6|1|0.75|0.6|5|0|146; (*GB) gi|296081795|emb|CBI20800.3| (e_value=2e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FIX2|AIG2L_ARATH (e_value=3e-39) AIG2-like protein OS=Arabidopsis thaliana GN=At5g39720 PE=1 SV=1;; (*TAIR) AT2G24390.1 (e_value=5e-57) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr2:10373796-10374654 FORWARD LENGTH=152;; (*ITAG) Solyc00g011880.2.1 (e_value=4e-92) genomic_reference:SL2.40ch00 gene_region:10330624-10333554 transcript_region:SL2.40ch00:10330624..10333554+ functional_description:"AIG2-like protein (AHRD V1 ***- B4FVZ7_MAIZE); contains Interpro domain(s) IPR009288 AIG2-like "; NbS00034707g0021.1 protein AED:0.29 eAED:0.29 QI:0|0|0.33|0.66|0|0.66|3|0|83; (*ITAG) Solyc08g069230.2.1 (e_value=2e-23) genomic_reference:SL2.40ch08 gene_region:55485626-55490941 transcript_region:SL2.40ch08:55485626..55490941- functional_description:"Unknown Protein (AHRD V1)"; NbS00034707g0019.1 protein AED:0.06 eAED:0.06 QI:249|1|0.66|1|0|0|3|0|35 NbS00034707g0018.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|86; (*GB) gi|147785839|emb|CAN73075.1| (e_value=6e-42) hypothetical protein VITISV_032387 [Vitis vinifera];; (*TAIR) AT3G59280.1 (e_value=1e-38) | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:21909266-21910519 REVERSE LENGTH=116;; (*ITAG) Solyc08g006120.2.1 (e_value=5e-53) genomic_reference:SL2.40ch08 gene_region:858597-863449 transcript_region:SL2.40ch08:858597..863449- go_terms:GO:0019904,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit TIM16 (AHRD V1 ***- B6UGA4_MAIZE); contains Interpro domain(s) IPR005341 Protein Transporter, Pam16 "; GO:0019904,GO:0015450 NbS00034707g0017.1 protein AED:0.20 eAED:0.20 QI:270|0.84|0.88|0.96|0.88|0.85|27|182|841; (*GB) gi|359476009|ref|XP_002280915.2| (e_value=0.0) PREDICTED: L-arabinokinase-like [Vitis vinifera];; (*SWP) sp|O23461|ARAK_ARATH (e_value=0.0) L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1;; (*TAIR) AT4G16130.1 (e_value=0.0) | Symbols: ARA1, ISA1, ATISA1 | arabinose kinase | chr4:9120875-9127656 FORWARD LENGTH=1039;; (*ITAG) Solyc00g011890.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:10333916-10350566 transcript_region:SL2.40ch00:10333916..10350566- go_terms:GO:0004335,GO:0009702 functional_description:"Galactokinase like protein (AHRD V1 **** O23461_ARATH); contains Interpro domain(s) IPR012369 Galactokinase, glycosyltransferase "; GO:0004335,GO:0009702 NbS00034707g0022.1 protein AED:0.23 eAED:0.26 QI:122|0.81|1|1|0.54|0.58|12|148|365; (*GB) gi|225430502|ref|XP_002285549.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 60 [Vitis vinifera];; (*SWP) sp|Q9SZ53|P2C60_ARATH (e_value=0.0) Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1;; (*TAIR) AT4G31860.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:15406685-15408589 REVERSE LENGTH=357;; (*ITAG) Solyc08g006060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:807001-823843 transcript_region:SL2.40ch08:807001..823843- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- C9E7A0_9CILI); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00052854g0004.1 protein AED:0.11 eAED:0.11 QI:304|0.88|0.8|1|0.88|0.8|10|358|686; (*GB) gi|359478930|ref|XP_002283389.2| (e_value=0.0) PREDICTED: telomere repeat-binding protein 5-like [Vitis vinifera];; (*SWP) sp|Q6R0E3|TRP5_ARATH (e_value=6e-121) Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2;; (*TAIR) AT1G07540.1 (e_value=4e-122) | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048 REVERSE LENGTH=630;; (*ITAG) Solyc06g076270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43777779-43781684 transcript_region:SL2.40ch06:43777779..43781684+ go_terms:GO:0003677,GO:0045449 functional_description:"Telomere repeat-binding protein 5 (AHRD V1 *-*- TRP5_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00019025g0015.1 protein AED:0.11 eAED:0.11 QI:178|0.8|0.81|1|0.7|0.72|11|269|394; (*GB) gi|255582668|ref|XP_002532113.1| (e_value=0.0) acyl-CoA dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q96329|ACOX4_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1;; (*TAIR) AT3G51840.1 (e_value=0.0) | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436;; (*ITAG) Solyc10g076600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58885360-58889823 transcript_region:SL2.40ch10:58885360..58889823- go_terms:GO:0055114 functional_description:"Acyl-CoA dehydrogenase (AHRD V1 ***- A3XH21_LEEBM); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00019025g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.66|1|0.8|0.83|6|447|208; (*GB) gi|297798872|ref|XP_002867320.1| (e_value=9e-55) hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L9A0|RM21_ARATH (e_value=1e-59) 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1;; (*TAIR) AT4G30930.1 (e_value=9e-61) | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270;; (*ITAG) Solyc02g078200.2.1 (e_value=6e-78) genomic_reference:SL2.40ch02 gene_region:37533967-37538228 transcript_region:SL2.40ch02:37533967..37538228+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6TJJ8_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00019025g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.62|0.44|1|0.37|0.44|9|453|347; (*GB) gi|359481161|ref|XP_003632584.1| (e_value=6e-108) PREDICTED: phosphatidylinositide phosphatase SAC1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9NTJ5|SAC1_HUMAN (e_value=1e-36) Phosphatidylinositide phosphatase SAC1 OS=Homo sapiens GN=SACM1L PE=1 SV=2;; (*TAIR) AT3G51830.1 (e_value=1e-97) | Symbols: ATG5, SAC8 | SAC domain-containing protein 8 | chr3:19220237-19225092 FORWARD LENGTH=588;; (*ITAG) Solyc10g076590.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58879381-58884032 transcript_region:SL2.40ch10:58879381..58884032+ functional_description:"Phosphatidylinositide phosphatase SAC1-like protein (AHRD V1 ***- D0N9N5_PHYIN); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; NbS00019025g0014.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.66|1|1|3|0|75 NbS00057668g0007.1 protein AED:0.40 eAED:0.50 QI:422|0|0.33|0.66|0|0|3|0|68 NbS00057668g0009.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0|1|2|0|267; (*GB) gi|302398973|gb|ADL36781.1| (e_value=5e-125) MYBR domain class transcription factor [Malus x domestica];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-23) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08520.1 (e_value=3e-102) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298;; (*ITAG) Solyc04g008870.2.1 (e_value=3e-105) genomic_reference:SL2.40ch04 gene_region:2492193-2494187 transcript_region:SL2.40ch04:2492193..2494187+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00022315g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|18418457|ref|NP_568358.1| (e_value=8e-16) plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana];; (*SWP) sp|Q9FKP0|PSRP6_ARATH (e_value=2e-17) 50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1;; (*TAIR) AT5G17870.1 (e_value=2e-18) | Symbols: PSRP6 | plastid-specific 50S ribosomal protein 6 | chr5:5907817-5908137 FORWARD LENGTH=106;; (*ITAG) Solyc04g077130.1.1 (e_value=1e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:59671130-59671465 transcript_region:SL2.40ch04:59671130..59671465- functional_description:"50S ribosomal protein 6, chloroplastic (AHRD V1 ***- PSRP6_ARATH)"; NbS00022315g0002.1 protein AED:0.18 eAED:0.18 QI:868|1|1|1|0.85|0.75|8|680|255; (*GB) gi|224081885|ref|XP_002306515.1| (e_value=6e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SUG3|ITPK2_ARATH (e_value=3e-126) Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2;; (*TAIR) AT4G08170.2 (e_value=2e-127) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr4:5163707-5167000 REVERSE LENGTH=353;; (*ITAG) Solyc04g077120.2.1 (e_value=1e-162) genomic_reference:SL2.40ch04 gene_region:59664715-59670763 transcript_region:SL2.40ch04:59664715..59670763+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 3 (AHRD V1 **** B6TDJ5_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00000637g0006.1 protein AED:0.32 eAED:0.32 QI:108|0.5|0.66|1|1|1|3|0|289; (*GB) gi|57013961|ref|YP_173433.1| (e_value=7e-90) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*SWP) sp|Q9FM04|GDL88_ARATH (e_value=8e-18) GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana GN=At5g62930 PE=2 SV=3;; (*TAIR) AT5G62930.1 (e_value=6e-19) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:25254912-25256357 FORWARD LENGTH=242;; (*ITAG) Solyc11g063540.1.1 (e_value=8e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00000637g0002.1 protein AED:0.52 eAED:0.53 QI:0|0.5|0.4|0.8|1|1|5|0|225; (*GB) gi|225457013|ref|XP_002282452.1| (e_value=1e-82) PREDICTED: GDSL esterase/lipase At5g62930 [Vitis vinifera];; (*SWP) sp|Q9FM04|GDL88_ARATH (e_value=7e-75) GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana GN=At5g62930 PE=2 SV=3;; (*TAIR) AT5G62930.1 (e_value=5e-76) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:25254912-25256357 FORWARD LENGTH=242;; (*ITAG) Solyc06g071510.2.1 (e_value=5e-100) genomic_reference:SL2.40ch06 gene_region:40420011-40424876 transcript_region:SL2.40ch06:40420011..40424876+ go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6TVA2_MAIZE); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00043238g0004.1 protein AED:0.35 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|481; (*GB) gi|255579041|ref|XP_002530371.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q93Z08|E136_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2;; (*TAIR) AT5G58090.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23505556-23507193 REVERSE LENGTH=477;; (*ITAG) Solyc05g025500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32867544-32874865 transcript_region:SL2.40ch05:32867544..32874865+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00012041g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|0.5|1|1|2|39|64 NbS00012041g0009.1 protein AED:0.05 eAED:0.05 QI:1214|1|1|1|0|0.33|3|137|437; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=3e-82) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=6e-41) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=4e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc01g095390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78423741-78426862 transcript_region:SL2.40ch01:78423741..78426862+ functional_description:"SKIP interacting protein 7 (Fragment) (AHRD V1 *-*- B8Q893_ORYSI)"; NbC24524455g0001.1 protein AED:0.00 eAED:0.00 QI:36|1|1|1|0|0|2|0|115; (*GB) gi|255540587|ref|XP_002511358.1| (e_value=2e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G50150.1 (e_value=4e-25) | Symbols: | Protein of Unknown Function (DUF239) | chr5:20402444-20406375 REVERSE LENGTH=420;; (*ITAG) Solyc06g071590.2.1 (e_value=3e-32) genomic_reference:SL2.40ch06 gene_region:40482051-40484331 transcript_region:SL2.40ch06:40482051..40484331+ functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00022652g0006.1 protein AED:0.33 eAED:0.33 QI:74|1|1|1|1|1|2|479|73; (*ITAG) Solyc03g058340.2.1 (e_value=5e-26) genomic_reference:SL2.40ch03 gene_region:21295375-21302723 transcript_region:SL2.40ch03:21295375..21302723+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009719g0001.1 protein AED:0.08 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|225453529|ref|XP_002278670.1| (e_value=4e-38) PREDICTED: zinc finger protein ZAT9-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M202|ZAT9_ARATH (e_value=5e-24) Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1;; (*TAIR) AT3G60580.1 (e_value=4e-25) | Symbols: | C2H2-like zinc finger protein | chr3:22394007-22394873 FORWARD LENGTH=288;; (*ITAG) Solyc06g060740.1.1 (e_value=3e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35159927-35160847 transcript_region:SL2.40ch06:35159927..35160847+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LRS3_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00009719g0107.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|187 NbS00009719g0121.1 protein AED:0.26 eAED:0.27 QI:0|0.75|0.4|1|0.75|0.6|5|0|212 NbS00009719g0112.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|1|1|2|0|247 NbS00009719g0122.1 protein AED:0.36 eAED:0.36 QI:154|1|1|1|0|0.5|2|15|104 NbS00009719g0120.1 protein AED:0.38 eAED:0.39 QI:0|1|0.33|1|0|0|3|0|105 NbS00013498g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|224140603|ref|XP_002323671.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g042230.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:27172244-27172609 transcript_region:SL2.40ch09:27172244..27172609+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013498g0002.1 protein AED:0.12 eAED:0.28 QI:0|0|0|1|1|1|3|0|514; (*GB) gi|224140601|ref|XP_002323670.1| (e_value=6e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ECK2|PPR92_ARATH (e_value=1e-41) Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2;; (*TAIR) AT1G62680.1 (e_value=1e-42) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23208247-23209893 REVERSE LENGTH=548;; (*ITAG) Solyc09g042250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:27230673-27232058 transcript_region:SL2.40ch09:27230673..27232058+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M869_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00013498g0009.1 protein AED:0.20 eAED:0.22 QI:18|0.75|0.2|0.8|0.5|0.8|5|0|595; (*GB) gi|356568230|ref|XP_003552316.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=1e-59) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G08760.1 (e_value=0.0) | Symbols: ATSIK | Protein kinase superfamily protein | chr3:2658129-2659984 REVERSE LENGTH=557;; (*ITAG) Solyc10g075040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58061308-58063925 transcript_region:SL2.40ch10:58061308..58063925- go_terms:GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00013498g0007.1 protein AED:0.31 eAED:0.65 QI:0|0|0|1|1|1|2|0|107; (*GB) gi|224074153|ref|XP_002304276.1| (e_value=5e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=4e-48) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=3e-49) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=2e-64) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00021385g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|147765629|emb|CAN62656.1| (e_value=0.0) hypothetical protein VITISV_023403 [Vitis vinifera];; (*SWP) sp|Q9SN22|SCL32_ARATH (e_value=1e-172) Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1;; (*TAIR) AT3G49950.1 (e_value=1e-173) | Symbols: | GRAS family transcription factor | chr3:18522570-18523802 FORWARD LENGTH=410;; (*ITAG) Solyc02g092570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48200568-48201884 transcript_region:SL2.40ch02:48200568..48201884+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GYX5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00021385g0001.1 protein AED:0.14 eAED:0.16 QI:460|0|0.5|1|0|0.5|2|0|362; (*GB) gi|147772915|emb|CAN71564.1| (e_value=3e-125) hypothetical protein VITISV_007567 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=2e-72) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc02g064710.2.1 (e_value=2e-147) genomic_reference:SL2.40ch02 gene_region:30401767-30403081 transcript_region:SL2.40ch02:30401767..30403081+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 ***- B9DHZ5_ARATH)"; NbS00015405g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|95; (*ITAG) Solyc07g041740.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00011100g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|343409100|gb|AEM23830.1| (e_value=1e-39) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=4e-23) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT1G61680.2 (e_value=2e-16) | Symbols: TPS14 | terpene synthase 14 | chr1:22772455-22774687 REVERSE LENGTH=562;; (*ITAG) Solyc12g006570.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00023644g0012.1 protein AED:0.19 eAED:0.20 QI:0|0.77|0.7|1|0.88|0.8|10|0|736; (*GB) gi|224074681|ref|XP_002304422.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q940Y1|ORP2A_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 2A OS=Arabidopsis thaliana GN=ORP2A PE=2 SV=1;; (*TAIR) AT4G22540.1 (e_value=0.0) | Symbols: ORP2A | OSBP(oxysterol binding protein)-related protein 2A | chr4:11860969-11866108 REVERSE LENGTH=721;; (*ITAG) Solyc08g078960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59785356-59791464 transcript_region:SL2.40ch08:59785356..59791464- go_terms:GO:0008142 functional_description:"Oxysterol-binding family protein (AHRD V1 **** D7ME32_ARALY); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008142 NbS00023644g0004.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|167; (*ITAG) Solyc08g078990.1.1 (e_value=9e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:59817230-59817871 transcript_region:SL2.40ch08:59817230..59817871- go_terms:GO:0016020,GO:0003824 functional_description:"Presqualene diphosphate phosphatase B (AHRD V1 *-*- C1BJL7_OSMMO); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020,GO:0003824 NbS00023644g0011.1 protein AED:0.19 eAED:0.19 QI:138|1|0.8|1|1|1|5|0|590; (*GB) gi|28273094|dbj|BAC56913.1| (e_value=0.0) nitrate transporter [Nicotiana tabacum];; (*SWP) sp|Q05085|PTR7_ARATH (e_value=0.0) Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1;; (*TAIR) AT1G12110.1 (e_value=0.0) | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | nitrate transporter 1.1 | chr1:4105341-4109290 FORWARD LENGTH=590;; (*ITAG) Solyc08g078950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59776836-59782323 transcript_region:SL2.40ch08:59776836..59782323+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q852P7_TOBAC); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00036520g0001.1 protein AED:0.80 eAED:0.81 QI:0|-1|0|1|-1|1|1|0|107; (*ITAG) Solyc04g011960.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4319129-4321795 transcript_region:SL2.40ch04:4319129..4321795+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00036520g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|69 NbS00019890g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|2|92|498; (*GB) gi|225439168|ref|XP_002268382.1| (e_value=0.0) PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase [Vitis vinifera];; (*SWP) sp|Q94AA9|XGD1_ARATH (e_value=3e-17) Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2;; (*TAIR) AT3G45400.1 (e_value=0.0) | Symbols: | exostosin family protein | chr3:16651963-16653479 FORWARD LENGTH=475;; (*ITAG) Solyc10g081430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61818805-61821211 transcript_region:SL2.40ch10:61818805..61821211- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 **-- D7LML7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00019503g0004.1 protein AED:0.14 eAED:0.15 QI:0|0.6|0.5|0.66|0.6|0.66|6|0|213; (*GB) gi|356502380|ref|XP_003519997.1| (e_value=6e-87) PREDICTED: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase-like [Glycine max];; (*SWP) sp|P0C2G7|LPXC_ARATH (e_value=4e-74) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Arabidopsis thaliana GN=At1g24793 PE=2 SV=1;; (*TAIR) AT1G24880.1 (e_value=9e-75) | Symbols: | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein | chr1:8776028-8783586 FORWARD LENGTH=369;; (*ITAG) Solyc07g008850.2.1 (e_value=3e-116) genomic_reference:SL2.40ch07 gene_region:3825382-3832232 transcript_region:SL2.40ch07:3825382..3832232- go_terms:GO:0009245 functional_description:"UDP-3-O- (AHRD V1 ***- B9SJ32_RICCO); contains Interpro domain(s) IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase "; GO:0009245 NbS00006408g0001.1 protein AED:0.00 eAED:0.00 QI:101|1|1|1|1|1|2|296|110; (*GB) gi|387911068|emb|CCG06563.1| (e_value=4e-22) TIP protein [Nicotiana tabacum];; (*SWP) sp|P37219|ASR2_SOLLC (e_value=2e-12) Abscisic stress-ripening protein 2 OS=Solanum lycopersicum GN=ASR2 PE=4 SV=1;; (*ITAG) Solyc04g071600.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:56163806-56165420 transcript_region:SL2.40ch04:56163806..56165420+ go_terms:GO:0006950 functional_description:"Abscisic stress ripening (Fragment) (AHRD V1 *--- D1MEA2_MUSAC); contains Interpro domain(s) IPR003496 ABA/WDS induced protein "; GO:0006950 NbS00044959g0003.1 protein AED:0.31 eAED:0.47 QI:0|0|0|1|1|1|3|0|160; (*GB) gi|113205399|gb|AAU90302.2| (e_value=5e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00044959g0001.1 protein AED:0.26 eAED:0.37 QI:0|0|0|1|1|1|3|0|216; (*GB) gi|255545758|ref|XP_002513939.1| (e_value=2e-64) UDP-glucuronosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LMF1|U85A3_ARATH (e_value=1e-44) UDP-glycosyltransferase 85A3 OS=Arabidopsis thaliana GN=UGT85A3 PE=2 SV=2;; (*TAIR) AT1G22380.1 (e_value=8e-46) | Symbols: AtUGT85A3, UGT85A3 | UDP-glucosyl transferase 85A3 | chr1:7900522-7902332 REVERSE LENGTH=488;; (*ITAG) Solyc04g074380.2.1 (e_value=7e-72) genomic_reference:SL2.40ch04 gene_region:57953589-57955266 transcript_region:SL2.40ch04:57953589..57955266- go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00021657g0007.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|593; (*GB) gi|14349253|dbj|BAB60721.1| (e_value=1e-117) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=9e-113) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21760.1 (e_value=8e-99) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54022806-54024245 transcript_region:SL2.40ch07:54022806..54024245+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00021657g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|475; (*GB) gi|225434626|ref|XP_002279475.1| (e_value=3e-159) PREDICTED: UDP-glycosyltransferase 71C4 [Vitis vinifera];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=3e-147) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT1G07250.1 (e_value=3e-134) | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4 | chr1:2225963-2227402 FORWARD LENGTH=479;; (*ITAG) Solyc07g043050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53916578-53918008 transcript_region:SL2.40ch07:53916578..53918008- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbC25480103g0002.1 protein AED:0.53 eAED:0.53 QI:0|0.33|0|0.75|0.66|0.5|4|0|98; (*GB) gi|225446767|ref|XP_002278419.1| (e_value=6e-41) PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic [Vitis vinifera];; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=2e-39) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT1G06690.1 (e_value=2e-40) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:2049742-2052039 REVERSE LENGTH=377;; (*ITAG) Solyc07g043570.2.1 (e_value=3e-47) genomic_reference:SL2.40ch07 gene_region:54807979-54814690 transcript_region:SL2.40ch07:54807979..54814690+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KG57_ARALY); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00016019g0003.1 protein AED:0.27 eAED:0.27 QI:1306|1|1|1|0.75|0.77|9|270|591; (*GB) gi|297737669|emb|CBI26870.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G23180.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:8216125-8219515 FORWARD LENGTH=834;; (*ITAG) Solyc05g026560.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:42034361-42047681 transcript_region:SL2.40ch05:42034361..42047681+ go_terms:GO:0005488 functional_description:"Catenin beta-1 (AHRD V1 *--- CTNB1_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016019g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.25|0.75|1|1|4|0|488; (*GB) gi|255557635|ref|XP_002519847.1| (e_value=0.0) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g077170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58247937-58253733 transcript_region:SL2.40ch08:58247937..58253733+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00016019g0004.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|357482335|ref|XP_003611453.1| (e_value=5e-50) Peptide transporter PTR1 [Medicago truncatula];; (*SWP) sp|Q8GXN2|PTR47_ARATH (e_value=3e-46) Nitrate transporter 1.8 OS=Arabidopsis thaliana GN=NRT1.8 PE=2 SV=2;; (*TAIR) AT4G21680.1 (e_value=2e-47) | Symbols: NRT1.8 | NITRATE TRANSPORTER 1.8 | chr4:11517540-11519576 REVERSE LENGTH=589;; (*ITAG) Solyc08g077170.2.1 (e_value=4e-66) genomic_reference:SL2.40ch08 gene_region:58247937-58253733 transcript_region:SL2.40ch08:58247937..58253733+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00020866g0006.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.85|0.66|0.57|7|0|194; (*GB) gi|225438529|ref|XP_002279389.1| (e_value=5e-72) PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SJ12|ATP7_ARATH (e_value=6e-63) Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1;; (*TAIR) AT2G21870.1 (e_value=5e-64) | Symbols: MGP1 | copper ion binding;cobalt ion binding;zinc ion binding | chr2:9320456-9322618 REVERSE LENGTH=240;; (*ITAG) Solyc00g009020.2.1 (e_value=1e-93) genomic_reference:SL2.40ch00 gene_region:8742084-8746574 transcript_region:SL2.40ch00:8742084..8746574+ go_terms:GO:0008270,GO:0050897,GO:0005507 functional_description:"Mitochondrial ATP synthase (AHRD V1 ***- B6TLY8_MAIZE)"; GO:0008270,GO:0050897,GO:0005507 NbS00020866g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|525; (*GB) gi|225451982|ref|XP_002279883.1| (e_value=0.0) PREDICTED: sugar carrier protein C [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00002473g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|157679146|dbj|BAF80452.1| (e_value=2e-32) DC1 domain containing protein [Nicotiana tabacum];; (*TAIR) AT2G44380.1 (e_value=2e-28) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc08g014370.1.1 (e_value=1e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00010565g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|474 NbS00043015g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|224109126|ref|XP_002315092.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G23000.1 (e_value=1e-13) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:8143614-8144865 FORWARD LENGTH=358;; (*ITAG) Solyc05g054250.1.1 (e_value=8e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:63355135-63356097 transcript_region:SL2.40ch05:63355135..63356097- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00001812g0002.1 protein AED:0.14 eAED:0.45 QI:0|0|0.5|1|0|0|2|306|65; (*GB) gi|225457895|ref|XP_002279335.1| (e_value=1e-18) PREDICTED: GDSL esterase/lipase EXL3 [Vitis vinifera];; (*SWP) sp|Q94CH8|EXL1_ARATH (e_value=6e-17) GDSL esterase/lipase EXL1 OS=Arabidopsis thaliana GN=EXL1 PE=2 SV=1;; (*TAIR) AT1G75880.1 (e_value=5e-18) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr1:28490564-28492298 FORWARD LENGTH=375;; (*ITAG) Solyc04g081800.1.1 (e_value=7e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63294471-63295880 transcript_region:SL2.40ch04:63294471..63295880+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00027759g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.75|1|0.33|0.25|4|44|458; (*GB) gi|225447777|ref|XP_002266017.1| (e_value=4e-79) PREDICTED: probable WRKY transcription factor 9-like [Vitis vinifera];; (*SWP) sp|Q9C9F0|WRKY9_ARATH (e_value=5e-56) Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1;; (*TAIR) AT1G68150.1 (e_value=4e-57) | Symbols: WRKY9, ATWRKY9 | WRKY DNA-binding protein 9 | chr1:25543970-25545615 FORWARD LENGTH=374;; (*ITAG) Solyc01g104550.2.1 (e_value=5e-147) genomic_reference:SL2.40ch01 gene_region:84779786-84782183 transcript_region:SL2.40ch01:84779786..84782183+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 32 (AHRD V1 *-*- Q6IEP9_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00056796g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|359497463|ref|XP_003635527.1| (e_value=5e-64) PREDICTED: uncharacterized protein LOC100853658 [Vitis vinifera];; (*TAIR) AT4G12340.1 (e_value=7e-32) | Symbols: | copper ion binding | chr4:7321492-7322004 REVERSE LENGTH=170;; (*ITAG) Solyc11g065270.1.1 (e_value=5e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47744805-47745338 transcript_region:SL2.40ch11:47744805..47745338+ go_terms:GO:0005507 functional_description:"CHCH domain containing protein (AHRD V1 ***- B6T5B2_MAIZE)"; GO:0005507 NbS00016281g0006.1 protein AED:0.29 eAED:0.29 QI:344|0.83|0.71|1|0.66|0.57|7|285|362; (*GB) gi|16610193|emb|CAD10639.1| (e_value=0.0) IAA9 protein [Nicotiana tabacum];; (*SWP) sp|Q38826|IAA8_ARATH (e_value=2e-111) Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1;; (*TAIR) AT2G22670.2 (e_value=1e-113) | Symbols: IAA8 | indoleacetic acid-induced protein 8 | chr2:9637136-9638459 FORWARD LENGTH=319;; (*ITAG) Solyc04g076850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59354651-59358834 transcript_region:SL2.40ch04:59354651..59358834+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00045699g0013.1 protein AED:0.01 eAED:0.01 QI:0|1|0.8|1|0.75|0.6|5|0|339; (*GB) gi|255554132|ref|XP_002518106.1| (e_value=4e-117) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q4PSN0|PME29_ARATH (e_value=5e-109) Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1;; (*TAIR) AT3G24130.1 (e_value=4e-110) | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335;; (*ITAG) Solyc12g098340.1.1 (e_value=1e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64223330-64226835 transcript_region:SL2.40ch12:64223330..64226835+ go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9RWI7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00045699g0011.1 protein AED:0.03 eAED:0.03 QI:297|1|1|1|1|1|3|355|252; (*GB) gi|306481011|emb|CBL51953.1| (e_value=3e-69) kip-related protein [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=2e-43) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=2e-44) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc12g098310.1.1 (e_value=6e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64210089-64212339 transcript_region:SL2.40ch12:64210089..64212339+ go_terms:GO:0005634 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 ***- Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0005634 NbS00045699g0012.1 protein AED:0.06 eAED:0.06 QI:91|1|1|1|1|1|4|219|206; (*GB) gi|76573371|gb|ABA46790.1| (e_value=9e-143) 60S ribosomal protein L13a-like protein [Solanum tuberosum];; (*SWP) sp|Q9FKC0|R13A4_ARATH (e_value=6e-137) 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1;; (*TAIR) AT5G48760.2 (e_value=5e-138) | Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206;; (*ITAG) Solyc12g098330.1.1 (e_value=7e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64219819-64222066 transcript_region:SL2.40ch12:64219819..64222066+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00045699g0010.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|89; (*TAIR) AT2G32720.1 (e_value=2e-14) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc09g061230.2.1 (e_value=4e-16) genomic_reference:SL2.40ch09 gene_region:53978084-53981055 transcript_region:SL2.40ch09:53978084..53981055+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** Q9ZWT2_ARATH); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00045699g0018.1 protein AED:0.11 eAED:0.11 QI:132|1|1|1|0.92|1|14|513|449; (*GB) gi|356558083|ref|XP_003547338.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100799456 [Glycine max];; (*SWP) sp|O14138|MIDA_SCHPO (e_value=3e-12) Protein midA homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25A8.03c PE=2 SV=2;; (*TAIR) AT1G04900.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00010625g0008.1 protein AED:0.07 eAED:0.07 QI:11|1|1|1|0.75|0.6|5|199|663; (*GB) gi|359493189|ref|XP_002265243.2| (e_value=3e-121) PREDICTED: protein SET DOMAIN GROUP 41-like [Vitis vinifera];; (*SWP) sp|Q3ECY6|SDG41_ARATH (e_value=2e-75) Protein SET DOMAIN GROUP 41 OS=Arabidopsis thaliana GN=SDG41 PE=2 SV=1;; (*TAIR) AT1G43245.1 (e_value=2e-76) | Symbols: | SET domain-containing protein | chr1:16308982-16310883 REVERSE LENGTH=558;; (*ITAG) Solyc04g071570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56137531-56141651 transcript_region:SL2.40ch04:56137531..56141651+ functional_description:"Protein SET DOMAIN GROUP 41 (AHRD V1 ***- SDG41_ARATH); contains Interpro domain(s) IPR001214 SET "; NbS00010625g0011.1 protein AED:0.26 eAED:0.26 QI:62|0.85|0.8|1|0.14|0.2|15|362|493; (*GB) gi|356531685|ref|XP_003534407.1| (e_value=0.0) PREDICTED: protein RFT1 homolog [Glycine max];; (*SWP) sp|Q54IV7|RFT1_DICDI (e_value=2e-38) Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1;; (*TAIR) AT5G07630.1 (e_value=1e-177) | Symbols: | lipid transporters | chr5:2410703-2414523 FORWARD LENGTH=611;; (*ITAG) Solyc05g051630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61145683-61160111 transcript_region:SL2.40ch05:61145683..61160111+ go_terms:GO:0005515,GO:0034202 functional_description:"RFT1 family protein (AHRD V1 ***- D3BUS7_POLPA); contains Interpro domain(s) IPR007594 RFT1 "; GO:0005515,GO:0034202 NbS00046581g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.66|1|0.62|0.44|9|137|449; (*GB) gi|77999311|gb|ABB17002.1| (e_value=0.0) transaldolase-like protein [Solanum tuberosum];; (*SWP) sp|Q829U5|TAL2_STRAW (e_value=1e-87) Transaldolase 2 OS=Streptomyces avermitilis GN=tal2 PE=3 SV=1;; (*TAIR) AT5G13420.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr5:4302080-4304212 REVERSE LENGTH=438;; (*ITAG) Solyc00g006800.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:5777117-5780677 transcript_region:SL2.40ch00:5777117..5780677+ go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Transaldolase (AHRD V1 ***- Q9FVH1_SOLLC); contains Interpro domain(s) IPR014634 Transaldolase, bacterial/plant type "; GO:0008152,GO:0005975,GO:0005737 NbS00054791g0001.1 protein AED:0.31 eAED:0.31 QI:285|0.83|0.85|1|0.66|0.57|7|447|341; (*GB) gi|6714407|gb|AAF26096.1|AC012393_22 (e_value=1e-114) unknown protein [Arabidopsis thaliana];; (*SWP) sp|Q6ZMB5|T184A_HUMAN (e_value=2e-21) Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1;; (*TAIR) AT3G05940.1 (e_value=2e-79) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=6e-84) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00056566g0003.1 protein AED:0.31 eAED:0.31 QI:246|1|1|1|1|1|6|596|297; (*GB) gi|19913105|emb|CAC84545.1| (e_value=0.0) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|P0C582|M2OM_NEUCR (e_value=6e-70) Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU04792 PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=3e-179) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00004041g0010.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|1|1|2|0|88; (*GB) gi|57013989|ref|YP_173461.1| (e_value=7e-32) hypothetical protein NitaMp123 [Nicotiana tabacum]; NbS00004041g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|154; (*GB) gi|57013986|ref|YP_173458.1| (e_value=5e-56) hypothetical protein NitaMp120 [Nicotiana tabacum];; (*ITAG) Solyc11g039990.1.1 (e_value=5e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:28096317-28096706 transcript_region:SL2.40ch11:28096317..28096706- functional_description:"Unknown Protein (AHRD V1)"; NbS00004041g0020.1 protein AED:0.16 eAED:0.16 QI:0|1|0.71|1|0.83|0.71|7|0|663; (*GB) gi|297742068|emb|CBI33855.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UBS8|RNF14_HUMAN (e_value=4e-55) E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1 SV=1;; (*TAIR) AT1G32340.1 (e_value=0.0) | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-11666037 REVERSE LENGTH=688;; (*ITAG) Solyc08g005150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:97549-104036 transcript_region:SL2.40ch08:97549..104036+ go_terms:GO:0003713,GO:0004842 functional_description:"Ubiquitin ligase (AHRD V1 **-* B3G3Y7_ADIVA); contains Interpro domain(s) IPR006575 RWD "; GO:0003713,GO:0004842 NbS00004041g0001.1 protein AED:0.45 eAED:1.00 QI:0|0|0|0.75|1|1|4|0|144 NbS00060653g0003.1 protein AED:0.13 eAED:0.13 QI:115|1|1|1|1|0.8|5|360|553; (*GB) gi|359485613|ref|XP_002269696.2| (e_value=2e-153) PREDICTED: WRKY transcription factor 6-like [Vitis vinifera];; (*SWP) sp|Q93WT0|WRK31_ARATH (e_value=2e-115) Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1;; (*TAIR) AT4G22070.1 (e_value=1e-116) | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding protein 31 | chr4:11691381-11694234 REVERSE LENGTH=538;; (*ITAG) Solyc07g051840.2.1 (e_value=4e-179) genomic_reference:SL2.40ch07 gene_region:57685533-57688827 transcript_region:SL2.40ch07:57685533..57688827+ go_terms:GO:0005515,GO:0010843 functional_description:"WRKY transcription factor (AHRD V1 ***- D0PSE9_9LAMI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00016204g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|708; (*GB) gi|224072735|ref|XP_002303855.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAH3|Y1887_ARATH (e_value=0.0) Putative receptor-like protein kinase At1g80870 OS=Arabidopsis thaliana GN=At1g80870 PE=2 SV=1;; (*TAIR) AT1G80870.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:30392133-30394211 FORWARD LENGTH=692;; (*ITAG) Solyc03g117550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60742965-60745067 transcript_region:SL2.40ch03:60742965..60745067+ go_terms:GO:0005975,GO:0006468 functional_description:"Receptor protein kinase-like (AHRD V1 *-*- Q5JN26_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005975,GO:0006468 NbS00028386g0001.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|224101533|ref|XP_002312320.1| (e_value=3e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSN7|BH147_ARATH (e_value=3e-44) Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=1 SV=1;; (*TAIR) AT3G17100.2 (e_value=2e-45) | Symbols: | sequence-specific DNA binding transcription factors | chr3:5831552-5832244 FORWARD LENGTH=230;; (*ITAG) Solyc01g058670.2.1 (e_value=3e-90) genomic_reference:SL2.40ch01 gene_region:60363932-60365436 transcript_region:SL2.40ch01:60363932..60365436- go_terms:GO:0003713,GO:0005504 functional_description:"Transcription factor (AHRD V1 *-** D7L4N5_ARALY)"; GO:0003713,GO:0005504 NbS00014326g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.66|1|0.5|0.33|3|333|211; (*GB) gi|225437525|ref|XP_002275502.1| (e_value=2e-121) PREDICTED: transmembrane protein 205 [Vitis vinifera];; (*SWP) sp|Q6GPW4|TM205_XENLA (e_value=2e-22) Transmembrane protein 205 OS=Xenopus laevis GN=tmem205 PE=2 SV=1;; (*TAIR) AT3G62580.1 (e_value=9e-115) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr3:23146931-23147735 FORWARD LENGTH=213;; (*ITAG) Solyc01g079590.2.1 (e_value=5e-140) genomic_reference:SL2.40ch01 gene_region:71205332-71212873 transcript_region:SL2.40ch01:71205332..71212873+ functional_description:"Transmembrane protein 205 (AHRD V1 ***- B9EN72_SALSA)"; NbS00045130g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.4|1|0.5|0.8|5|0|276; (*GB) gi|255562647|ref|XP_002522329.1| (e_value=2e-65) Upstream activation factor subunit UAF30, putative [Ricinus communis];; (*SWP) sp|Q05024|TRI1_YEAST (e_value=2e-14) Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1;; (*TAIR) AT1G49520.1 (e_value=4e-47) | Symbols: | SWIB complex BAF60b domain-containing protein | chr1:18329736-18331691 FORWARD LENGTH=372;; (*ITAG) Solyc01g108290.2.1 (e_value=1e-103) genomic_reference:SL2.40ch01 gene_region:87405735-87410001 transcript_region:SL2.40ch01:87405735..87410001+ go_terms:GO:0005515,GO:0003701 functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 ***- B6SZA4_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0005515,GO:0003701 NbS00040768g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.6|1|1|1|5|329|221; (*GB) gi|225454571|ref|XP_002263420.1| (e_value=3e-94) PREDICTED: methyltransferase-like protein 21A [Vitis vinifera];; (*SWP) sp|Q8WXB1|MT21A_HUMAN (e_value=2e-19) Methyltransferase-like protein 21A OS=Homo sapiens GN=METTL21A PE=2 SV=2;; (*TAIR) AT1G73320.1 (e_value=9e-84) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:27565728-27567206 REVERSE LENGTH=316;; (*ITAG) Solyc08g014040.2.1 (e_value=5e-118) genomic_reference:SL2.40ch08 gene_region:3550661-3556757 transcript_region:SL2.40ch08:3550661..3556757+ functional_description:"FAM119A (AHRD V1 *--- B9EP45_SALSA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbC24348328g0001.1 protein AED:0.24 eAED:1.00 QI:64|0|0|1|0|0|2|0|61 NbS00014406g0006.1 protein AED:0.08 eAED:0.08 QI:550|0.9|0.90|1|0.8|0.63|11|360|759; (*GB) gi|225464265|ref|XP_002271012.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein HDG11-like [Vitis vinifera];; (*SWP) sp|Q9FX31|HDG11_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1;; (*TAIR) AT1G73360.1 (e_value=0.0) | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722;; (*ITAG) Solyc03g098200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53990300-53993447 transcript_region:SL2.40ch03:53990300..53993447- go_terms:GO:0003700 functional_description:"Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (AHRD V1 **** PDF2_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700 NbS00011946g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|6|219|410; (*GB) gi|585749|sp|P37272.1|PSY_CAPAN (e_value=0.0) RecName: Full=Phytoene synthase, chloroplastic; Flags: Precursor;; (*SWP) sp|P37272|PSY_CAPAN (e_value=0.0) Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1;; (*TAIR) AT5G17230.2 (e_value=0.0) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422;; (*ITAG) Solyc03g031860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8606368-8610361 transcript_region:SL2.40ch03:8606368..8610361+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 1"; GO:0046905,GO:0016767 NbS00041035g0003.1 protein AED:0.13 eAED:0.13 QI:18|0.77|0.6|0.9|0.77|0.8|10|414|435; (*GB) gi|51315816|sp|O82030.1|HIS8_TOBAC (e_value=0.0) RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Full=Imidazole acetol-phosphate transaminase; Flags: Precursor;; (*SWP) sp|O82030|HIS8_TOBAC (e_value=0.0) Histidinol-phosphate aminotransferase, chloroplastic OS=Nicotiana tabacum GN=HPA PE=2 SV=1;; (*TAIR) AT5G10330.2 (e_value=0.0) | Symbols: EMB2196, HPA1, HISN6A, ATHPA1 | histidinol phosphate aminotransferase 1 | chr5:3248027-3249858 REVERSE LENGTH=417;; (*ITAG) Solyc04g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2786259-2793145 transcript_region:SL2.40ch04:2786259..2793145- go_terms:GO:0004400 functional_description:"Histidinol-phosphate aminotransferase (AHRD V1 **** B6TRS1_MAIZE); contains Interpro domain(s) IPR005861 Histidinol-phosphate aminotransferase "; GO:0004400 NbS00048529g0001.1 protein AED:0.02 eAED:0.02 QI:503|1|0.5|1|0|0|2|0|414; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc05g014340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8167788-8176116 transcript_region:SL2.40ch05:8167788..8176116- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00017663g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|81 NbS00012586g0006.1 protein AED:0.18 eAED:0.18 QI:126|1|1|1|0.92|0.85|14|349|530; (*GB) gi|147777235|emb|CAN76636.1| (e_value=0.0) hypothetical protein VITISV_010658 [Vitis vinifera];; (*SWP) sp|Q6YS30|RH5_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1;; (*TAIR) AT1G31970.1 (e_value=0.0) | Symbols: STRS1 | DEA(D/H)-box RNA helicase family protein | chr1:11479921-11482707 FORWARD LENGTH=537;; (*ITAG) Solyc08g076200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57382924-57391205 transcript_region:SL2.40ch08:57382924..57391205- go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LHE4_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbC24699020g0001.1 protein AED:0.12 eAED:0.16 QI:60|1|0.5|1|0|0|2|0|52; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=2e-26) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=7e-28) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT3G10890.1 (e_value=3e-19) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:3407455-3409000 REVERSE LENGTH=414;; (*ITAG) Solyc12g013770.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4582233-4583505 transcript_region:SL2.40ch12:4582233..4583505- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00009712g0004.1 protein AED:0.51 eAED:0.57 QI:72|0.5|0|1|0|0.33|3|0|146; (*GB) gi|302141796|emb|CBI18999.3| (e_value=1e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=1e-22) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G44130.1 (e_value=8e-37) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:16787508-16789318 REVERSE LENGTH=405;; (*ITAG) Solyc06g060130.2.1 (e_value=3e-52) genomic_reference:SL2.40ch06 gene_region:34464964-34469756 transcript_region:SL2.40ch06:34464964..34469756+ go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00009712g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|84 NbS00007255g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.94|1|0.56|0.52|17|605|709; (*GB) gi|350538715|ref|NP_001234356.1| (e_value=0.0) cullin 4 [Solanum lycopersicum];; (*SWP) sp|Q8LGH4|CUL4_ARATH (e_value=0.0) Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1;; (*TAIR) AT5G46210.1 (e_value=0.0) | Symbols: CUL4, ATCUL4 | cullin4 | chr5:18731569-18736653 REVERSE LENGTH=792;; (*ITAG) Solyc02g021470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13552226-13582979 transcript_region:SL2.40ch02:13552226..13582979- go_terms:GO:0030332 functional_description:"Cullin 4 (AHRD V1 ***- A9LK40_SOLLC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00001364g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|482; (*GB) gi|255573625|ref|XP_002527735.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc11g066090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48854232-48855767 transcript_region:SL2.40ch11:48854232..48855767+ go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0006508 NbS00001364g0011.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0.33|0.5|4|0|305; (*GB) gi|242072786|ref|XP_002446329.1| (e_value=3e-167) hypothetical protein SORBIDRAFT_06g014400 [Sorghum bicolor];; (*SWP) sp|P09189|HSP7C_PETHY (e_value=4e-141) Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=8e-141) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc06g076020.2.1 (e_value=8e-143) genomic_reference:SL2.40ch06 gene_region:43582389-43585486 transcript_region:SL2.40ch06:43582389..43585486- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00011820g0004.1 protein AED:0.17 eAED:0.17 QI:3|1|0.5|1|0|0|2|70|80 NbS00011820g0007.1 protein AED:0.33 eAED:0.34 QI:135|0.42|0.62|1|0|0.25|8|219|326; (*GB) gi|225440914|ref|XP_002282860.1| (e_value=1e-89) PREDICTED: CAAX prenyl protease 2 [Vitis vinifera];; (*SWP) sp|Q8GW19|FACE2_ARATH (e_value=1e-68) CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2;; (*TAIR) AT2G36305.1 (e_value=8e-70) | Symbols: RCE1, ATFACE-2, ATFACE2, FACE2 | farnesylated protein-converting enzyme 2 | chr2:15214607-15216449 FORWARD LENGTH=311;; (*ITAG) Solyc09g009630.2.1 (e_value=1e-116) genomic_reference:SL2.40ch09 gene_region:3041741-3049141 transcript_region:SL2.40ch09:3041741..3049141- go_terms:GO:0004222 functional_description:"CAAX prenyl protease 2 (AHRD V1 ***- B6TS29_MAIZE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0004222 NbS00014925g0010.1 protein AED:0.38 eAED:0.38 QI:0|1|0.85|1|0.83|0.71|7|160|285; (*GB) gi|224122134|ref|XP_002330549.1| (e_value=1e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54PM7|NAGK_DICDI (e_value=4e-54) N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2;; (*TAIR) AT1G30540.1 (e_value=8e-145) | Symbols: | Actin-like ATPase superfamily protein | chr1:10816951-10819172 REVERSE LENGTH=351;; (*ITAG) Solyc02g023980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15374578-15384944 transcript_region:SL2.40ch02:15374578..15384944+ functional_description:"ATPase BadF/BadG/BcrA/BcrD-type family (AHRD V1 ***- D7KFL2_ARALY); contains Interpro domain(s) IPR002731 ATPase, BadF/BadG/BcrA/BcrD type "; NbS00014925g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.57|0.62|0.87|1|1|8|0|387; (*GB) gi|7643796|gb|AAF65513.1| (e_value=5e-170) GTP-binding protein [Capsicum annuum];; (*SWP) sp|Q7ZWM6|OLA1_XENLA (e_value=4e-97) Obg-like ATPase 1 OS=Xenopus laevis GN=ola1 PE=2 SV=1;; (*TAIR) AT1G30580.1 (e_value=1e-151) | Symbols: | GTP binding | chr1:10831953-10835454 REVERSE LENGTH=394;; (*ITAG) Solyc02g023970.2.1 (e_value=8e-174) genomic_reference:SL2.40ch02 gene_region:15314779-15327219 transcript_region:SL2.40ch02:15314779..15327219- go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** Q9M7P3_CAPAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00033465g0001.1 protein AED:0.16 eAED:0.16 QI:321|1|1|1|1|1|2|386|502; (*GB) gi|225428416|ref|XP_002283761.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FtsH-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=2e-33) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT3G50930.1 (e_value=8e-176) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc03g033790.2.1 (e_value=3e-173) genomic_reference:SL2.40ch03 gene_region:9684519-9688514 transcript_region:SL2.40ch03:9684519..9688514+ go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 3 (AHRD V1 *--- FTSH3_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00033465g0008.1 protein AED:0.05 eAED:0.05 QI:259|1|1|1|0.72|0.66|12|563|527; (*GB) gi|225428412|ref|XP_002280254.1| (e_value=0.0) PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like [Vitis vinifera];; (*SWP) sp|P51820|DRTS_SOYBN (e_value=0.0) Bifunctional dihydrofolate reductase-thymidylate synthase OS=Glycine max PE=1 SV=1;; (*TAIR) AT2G16370.1 (e_value=0.0) | Symbols: THY-1 | thymidylate synthase 1 | chr2:7082038-7084333 REVERSE LENGTH=519;; (*ITAG) Solyc01g109830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88435982-88439987 transcript_region:SL2.40ch01:88435982..88439987- go_terms:GO:0009165,GO:0006231,GO:0055114 functional_description:"Thymidylate synthase (AHRD V1 ***- D8LWN8_BLAHO); contains Interpro domain(s) IPR012262 Bifunctional dihydrofolate reductase/thymidylate synthase "; GO:0009165,GO:0006231,GO:0055114 NbS00008667g0011.1 protein AED:0.26 eAED:0.33 QI:97|0.66|0.71|1|0.5|0.42|7|0|242; (*GB) gi|38639325|gb|AAR25800.1| (e_value=9e-126) cathepsin B-like cysteine proteinase [Solanum tuberosum];; (*SWP) sp|P00787|CATB_RAT (e_value=6e-24) Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2;; (*TAIR) AT1G02305.1 (e_value=7e-95) | Symbols: | Cysteine proteinases superfamily protein | chr1:455816-457974 FORWARD LENGTH=362;; (*ITAG) Solyc02g069100.2.1 (e_value=1e-127) genomic_reference:SL2.40ch02 gene_region:33641728-33645614 transcript_region:SL2.40ch02:33641728..33645614- go_terms:GO:0006508,GO:0050790,GO:0008234 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B "; GO:0006508,GO:0050790,GO:0008234 NbS00008667g0012.1 protein AED:0.30 eAED:0.33 QI:296|0.8|0.72|1|0.7|0.72|11|228|361; (*GB) gi|94958151|gb|ABF47216.1| (e_value=0.0) cathepsin B [Nicotiana benthamiana];; (*SWP) sp|Q5R6D1|CATB_PONAB (e_value=1e-73) Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1;; (*TAIR) AT4G01610.1 (e_value=8e-156) | Symbols: | Cysteine proteinases superfamily protein | chr4:694857-696937 FORWARD LENGTH=359;; (*ITAG) Solyc02g069090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33631872-33638685 transcript_region:SL2.40ch02:33631872..33638685- go_terms:GO:0030984 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B "; GO:0030984 NbS00048592g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|0.5|2|0|89; (*GB) gi|359492673|ref|XP_002282958.2| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100259179 [Vitis vinifera];; (*ITAG) Solyc04g080170.2.1 (e_value=2e-48) genomic_reference:SL2.40ch04 gene_region:62021907-62032697 transcript_region:SL2.40ch04:62021907..62032697- go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00046227g0006.1 protein AED:0.14 eAED:0.15 QI:65|0.90|0.91|1|0.81|0.75|12|425|960; (*GB) gi|225442543|ref|XP_002278956.1| (e_value=0.0) PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Vitis vinifera];; (*SWP) sp|Q9GL73|RNZ2_GORGO (e_value=2e-68) Zinc phosphodiesterase ELAC protein 2 OS=Gorilla gorilla gorilla GN=ELAC2 PE=2 SV=1;; (*TAIR) AT3G16260.1 (e_value=0.0) | Symbols: TRZ4 | tRNAse Z4 | chr3:5509397-5513118 FORWARD LENGTH=942;; (*ITAG) Solyc03g120470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62903860-62913100 transcript_region:SL2.40ch03:62903860..62913100- go_terms:GO:0042781 functional_description:"Aquaporin (AHRD V1 *-*- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0042781 NbS00046227g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|616; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=1e-158) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=6e-66) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=5e-67) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc03g120460.2.1 (e_value=2e-109) genomic_reference:SL2.40ch03 gene_region:62898588-62902523 transcript_region:SL2.40ch03:62898588..62902523- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00038603g0004.1 protein AED:0.06 eAED:0.06 QI:718|0.71|0.75|1|0.85|0.75|8|406|876; (*GB) gi|356892154|gb|AET41696.1| (e_value=0.0) formin [Solanum lycopersicum];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=5e-177) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=4e-178) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc07g052730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58505463-58511995 transcript_region:SL2.40ch07:58505463..58511995+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00002281g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.83|1|0.6|0.83|6|358|469; (*GB) gi|356568951|ref|XP_003552671.1| (e_value=0.0) PREDICTED: metal tolerance protein 5-like [Glycine max];; (*SWP) sp|Q5NA18|MTP5_ORYSJ (e_value=0.0) Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1;; (*TAIR) AT2G39450.1 (e_value=0.0) | Symbols: MTP11, ATMTP11 | Cation efflux family protein | chr2:16471744-16473735 REVERSE LENGTH=394;; (*ITAG) Solyc05g054730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63730878-63736288 transcript_region:SL2.40ch05:63730878..63736288+ go_terms:GO:0010486,GO:0005384 functional_description:"Cation diffusion facilitator 10 (AHRD V1 **-- Q84ND4_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0010486,GO:0005384 NbS00002281g0010.1 protein AED:0.28 eAED:0.29 QI:160|0.85|0.86|1|0.85|0.8|15|481|560; (*GB) gi|350538741|ref|NP_001234613.1| (e_value=0.0) beta-hexosaminidase 2 [Solanum lycopersicum];; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=2e-104) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1;; (*TAIR) AT3G55260.1 (e_value=0.0) | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | chr3:20489317-20492858 FORWARD LENGTH=541;; (*ITAG) Solyc05g054710.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63711436-63721172 transcript_region:SL2.40ch05:63711436..63721172- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 "; GO:0016231 NbS00005139g0010.1 protein AED:0.42 eAED:0.82 QI:0|1|0|1|1|1|2|0|190; (*GB) gi|147771521|emb|CAN75691.1| (e_value=4e-88) hypothetical protein VITISV_038532 [Vitis vinifera];; (*SWP) sp|A1KGK6|Y775_MYCBP (e_value=3e-15) Putative S-adenosyl-L-methionine-dependent methyltransferase BCG_0775c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_0775c PE=3 SV=1;; (*TAIR) AT5G42760.1 (e_value=7e-75) | Symbols: | Leucine carboxyl methyltransferase | chr5:17148953-17150105 FORWARD LENGTH=348; NbS00005139g0014.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.90|1|0.5|0.63|11|509|400; (*GB) gi|302142492|emb|CBI19695.3| (e_value=7e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=2e-155) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=2e-156) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00005139g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|1|1|6|545|267; (*GB) gi|224129620|ref|XP_002320631.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42765.1 (e_value=2e-72) | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17150505-17151641 REVERSE LENGTH=229;; (*ITAG) Solyc04g080390.2.1 (e_value=3e-117) genomic_reference:SL2.40ch04 gene_region:62178144-62180528 transcript_region:SL2.40ch04:62178144..62180528- functional_description:"Unknown Protein (AHRD V1)"; NbS00007992g0011.1 protein AED:0.08 eAED:0.08 QI:44|0|0.5|1|0|0|2|0|552; (*GB) gi|225450265|ref|XP_002269745.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242579 [Vitis vinifera];; (*TAIR) AT2G44260.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF946) | chr2:18295988-18297739 FORWARD LENGTH=553;; (*ITAG) Solyc10g045380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28655811-28661467 transcript_region:SL2.40ch10:28655811..28661467- functional_description:"Vacuolar protein sorting protein 62 (AHRD V1 *--- C5GF44_AJEDR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00007992g0010.1 protein AED:0.37 eAED:0.37 QI:85|0.8|0.83|0.83|0.4|0.5|6|0|408; (*GB) gi|350536271|ref|NP_001234750.1| (e_value=2e-100) chromo domain protein LHP1 [Solanum lycopersicum];; (*SWP) sp|Q944N1|LHP1_SOLLC (e_value=7e-102) Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2;; (*TAIR) AT5G17690.1 (e_value=4e-53) | Symbols: TFL2, LHP1 | like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445;; (*ITAG) Solyc01g081500.2.1 (e_value=5e-104) genomic_reference:SL2.40ch01 gene_region:73210934-73216952 transcript_region:SL2.40ch01:73210934..73216952+ go_terms:GO:0003677,GO:0035064 functional_description:"Histone-lysine N-methyltransferase SUV39H2 (AHRD V1 *--* SUV92_CHICK); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0003677,GO:0035064 NbS00032296g0012.1 protein AED:0.12 eAED:0.12 QI:417|1|1|1|0.4|0.5|6|0|230; (*GB) gi|359482329|ref|XP_003632756.1| (e_value=2e-75) PREDICTED: DNA replication complex GINS protein PSF1-like [Vitis vinifera];; (*SWP) sp|Q14691|PSF1_HUMAN (e_value=1e-22) DNA replication complex GINS protein PSF1 OS=Homo sapiens GN=GINS1 PE=1 SV=1;; (*TAIR) AT1G80190.1 (e_value=8e-66) | Symbols: PSF1 | partner of SLD five 1 | chr1:30159476-30161115 FORWARD LENGTH=201;; (*ITAG) Solyc09g008630.2.1 (e_value=4e-152) genomic_reference:SL2.40ch09 gene_region:2093603-2098893 transcript_region:SL2.40ch09:2093603..2098893- go_terms:GO:0005515 functional_description:"DNA replication complex GINS protein PSF1 (AHRD V1 ***- B6THR1_MAIZE); contains Interpro domain(s) IPR005339 GINS complex, Psf1 component "; GO:0005515 NbS00032296g0011.1 protein AED:0.37 eAED:0.37 QI:211|1|1|1|0.88|0.9|10|800|233; (*GB) gi|225441076|ref|XP_002264435.1| (e_value=2e-112) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SR70|FK164_ARATH (e_value=3e-104) Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1;; (*TAIR) AT3G10060.1 (e_value=2e-105) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3102291-3103801 FORWARD LENGTH=230;; (*ITAG) Solyc09g008650.2.1 (e_value=1e-149) genomic_reference:SL2.40ch09 gene_region:2103668-2112469 transcript_region:SL2.40ch09:2103668..2112469- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B8HUH5_CYAP4); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00032296g0015.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|566; (*GB) gi|359481950|ref|XP_002264481.2| (e_value=0.0) PREDICTED: wall-associated receptor kinase-like 20-like [Vitis vinifera];; (*SWP) sp|Q9LZM4|WAKLQ_ARATH (e_value=1e-132) Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1;; (*TAIR) AT5G02070.1 (e_value=1e-133) | Symbols: | Protein kinase family protein | chr5:405895-408220 REVERSE LENGTH=657;; (*ITAG) Solyc09g008640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2100959-2102845 transcript_region:SL2.40ch09:2100959..2102845- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00023981g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|388498124|gb|AFK37128.1| (e_value=8e-123) unknown [Medicago truncatula];; (*SWP) sp|A5GFW7|CT043_PIG (e_value=6e-27) UPF0549 protein C20orf43 homolog OS=Sus scrofa PE=3 SV=1;; (*TAIR) AT5G58020.1 (e_value=1e-99) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | chr5:23485585-23486649 FORWARD LENGTH=354;; (*ITAG) Solyc07g005340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:266473-267654 transcript_region:SL2.40ch07:266473..267654- functional_description:"UPF0549 protein C20orf43 homolog (AHRD V1 *--- C1BN61_9MAXI); contains Interpro domain(s) IPR006735 Protein of unknown function DUF602 "; NbC25768428g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|0|0|3|0|80; (*GB) gi|147858032|emb|CAN80349.1| (e_value=2e-45) hypothetical protein VITISV_003137 [Vitis vinifera];; (*SWP) sp|Q6NMB6|UTR5B_ARATH (e_value=2e-42) UDP-galactose/UDP-glucose transporter 5B OS=Arabidopsis thaliana GN=At5g59740 PE=2 SV=1;; (*TAIR) AT5G59740.1 (e_value=2e-43) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr5:24070310-24072747 REVERSE LENGTH=344;; (*ITAG) Solyc06g005290.2.1 (e_value=6e-48) genomic_reference:SL2.40ch06 gene_region:295547-304925 transcript_region:SL2.40ch06:295547..304925- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 5 (AHRD V1 **** D7LMW4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00020290g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|118482459|gb|ABK93152.1| (e_value=2e-42) unknown [Populus trichocarpa];; (*TAIR) AT2G42760.1 (e_value=2e-26) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc12g010940.1.1 (e_value=3e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3822166-3822834 transcript_region:SL2.40ch12:3822166..3822834- functional_description:"Unknown Protein (AHRD V1)"; NbS00020290g0019.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|0|0.5|2|0|230; (*GB) gi|85068626|gb|ABC69393.1| (e_value=1e-127) CYP72A55v2 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=3e-63) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14620.1 (e_value=1e-64) | Symbols: CYP72A8 | cytochrome P450, family 72, subfamily A, polypeptide 8 | chr3:4914978-4916853 FORWARD LENGTH=515;; (*ITAG) Solyc07g055550.1.1 (e_value=4e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60857157-60860735 transcript_region:SL2.40ch07:60857157..60860735- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00020290g0015.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|85068626|gb|ABC69393.1| (e_value=1e-54) CYP72A55v2 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=5e-15) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=9e-16) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g055550.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60857157-60860735 transcript_region:SL2.40ch07:60857157..60860735- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00020290g0003.1 protein AED:0.27 eAED:0.59 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=2e-47) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=2e-18) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=1e-19) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc10g008580.1.1 (e_value=1e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00020290g0017.1 protein AED:0.54 eAED:0.78 QI:0|0|0|1|0.5|0.33|3|0|251 NbS00036244g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|4|501|429; (*GB) gi|356555714|ref|XP_003546175.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=4e-121) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=3e-161) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc04g014680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4937457-4942883 transcript_region:SL2.40ch04:4937457..4942883- go_terms:GO:0004221 functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-* B6TDL6_MAIZE)"; GO:0004221 NbS00036244g0014.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|490; (*GB) gi|225445328|ref|XP_002281500.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Vitis vinifera];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=4e-177) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT3G24330.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=500;; (*ITAG) Solyc11g012030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4970776-4972913 transcript_region:SL2.40ch11:4970776..4972913- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B4FB19_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00036244g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.66|3|171|352; (*GB) gi|255554735|ref|XP_002518405.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=0.0) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=0.0) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc11g012050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4992438-4996469 transcript_region:SL2.40ch11:4992438..4996469+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q2HTT4_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036244g0012.1 protein AED:0.32 eAED:0.33 QI:0|1|0.33|1|1|0.66|3|0|99; (*GB) gi|224113857|ref|XP_002316593.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8WNV7|DHRS4_PIG (e_value=2e-17) Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=2;; (*TAIR) AT4G05530.1 (e_value=3e-36) | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254;; (*ITAG) Solyc04g014670.2.1 (e_value=7e-45) genomic_reference:SL2.40ch04 gene_region:4934139-4937078 transcript_region:SL2.40ch04:4934139..4937078+ go_terms:GO:0001758 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C0BIG4_9BACT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0001758 NbS00027421g0005.1 protein AED:0.07 eAED:0.12 QI:0|0|0|1|1|1|2|0|75 NbS00027421g0105.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|1|1|1|4|0|392 NbS00007759g0004.1 protein AED:0.10 eAED:0.10 QI:40|0.8|0.66|1|0.6|0.83|6|81|363; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=0.0) patatin-like protein 3 [Nicotiana tabacum];; (*SWP) sp|Q42502|PT2K3_SOLTU (e_value=5e-75) Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1;; (*TAIR) AT2G26560.1 (e_value=2e-101) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc02g090490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46594534-46596748 transcript_region:SL2.40ch02:46594534..46596748- go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00007759g0111.1 protein AED:0.40 eAED:0.40 QI:0|1|0.71|1|0.33|0.14|7|239|273 NbS00007759g0112.1 protein AED:0.07 eAED:0.07 QI:41|1|1|1|1|1|6|53|427 NbS00040105g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|112; (*ITAG) Solyc03g034230.2.1 (e_value=6e-20) genomic_reference:SL2.40ch03 gene_region:10205170-10208243 transcript_region:SL2.40ch03:10205170..10208243- functional_description:"Unknown Protein (AHRD V1)"; NbS00040105g0005.1 protein AED:0.27 eAED:0.30 QI:73|0.5|0|1|0|0|3|0|130; (*GB) gi|225462170|ref|XP_002267478.1| (e_value=6e-70) PREDICTED: 60S ribosomal protein L27 [Vitis vinifera];; (*SWP) sp|P41101|RL27_SOLTU (e_value=4e-69) 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1;; (*TAIR) AT4G15000.1 (e_value=3e-66) | Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135;; (*ITAG) Solyc06g073300.1.1 (e_value=1e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41549960-41550367 transcript_region:SL2.40ch06:41549960..41550367- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "; GO:0003735 NbC24578719g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224104041|ref|XP_002313293.1| (e_value=1e-29) cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=4e-28) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37990.1 (e_value=2e-23) | Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 | elicitor-activated gene 3-2 | chr4:17855964-17857388 FORWARD LENGTH=359;; (*ITAG) Solyc11g011340.1.1 (e_value=6e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00016531g0006.1 protein AED:0.19 eAED:0.20 QI:434|0.5|0.33|1|0.5|0.33|3|0|337; (*GB) gi|255536771|ref|XP_002509452.1| (e_value=6e-53) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FZA4|DOF14_ARATH (e_value=4e-34) Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1;; (*TAIR) AT1G28310.2 (e_value=3e-35) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:9912534-9913685 REVERSE LENGTH=325;; (*ITAG) Solyc02g077950.1.1 (e_value=9e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37348726-37349865 transcript_region:SL2.40ch02:37348726..37349865+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 ***- Q0PY33_SOLLC); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00037423g0005.1 protein AED:0.14 eAED:0.14 QI:394|0.88|1|1|0.55|0.6|10|338|580; (*GB) gi|297739079|emb|CBI28568.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93ZS4|NIK3_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1;; (*TAIR) AT1G60800.1 (e_value=0.0) | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383601-22386931 REVERSE LENGTH=632;; (*ITAG) Solyc05g005140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:126214-131792 transcript_region:SL2.40ch05:126214..131792- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00028348g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.8|1|0.5|0.8|5|398|322; (*GB) gi|225441918|ref|XP_002284505.1| (e_value=4e-110) PREDICTED: probable calcium-binding protein CML49 [Vitis vinifera];; (*SWP) sp|Q8W4L0|CML49_ARATH (e_value=3e-101) Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1;; (*TAIR) AT3G10300.3 (e_value=2e-102) | Symbols: | Calcium-binding EF-hand family protein | chr3:3186436-3188071 FORWARD LENGTH=335;; (*ITAG) Solyc10g079890.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60678575-60681240 transcript_region:SL2.40ch10:60678575..60681240- go_terms:GO:0005509 functional_description:"Calpain-2 catalytic subunit (AHRD V1 *--- CAN2_CHICK); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00050622g0011.1 protein AED:0.31 eAED:0.31 QI:0|0.9|0.81|0.90|0.8|1|11|85|429; (*GB) gi|225454803|ref|XP_002277076.1| (e_value=0.0) PREDICTED: D-xylose-proton symporter-like 2 [Vitis vinifera];; (*SWP) sp|Q6AWX0|XYLL2_ARATH (e_value=0.0) D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1;; (*TAIR) AT5G17010.3 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:5587851-5592332 REVERSE LENGTH=503;; (*ITAG) Solyc03g096950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52773866-52782491 transcript_region:SL2.40ch03:52773866..52782491+ go_terms:GO:0015519 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00050622g0010.1 protein AED:0.37 eAED:0.38 QI:0|0.5|0.6|1|0.75|0.6|5|546|224; (*GB) gi|18396441|ref|NP_566192.1| (e_value=9e-75) putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Arabidopsis thaliana];; (*SWP) sp|Q9M9M9|NDUAC_ARATH (e_value=3e-76) Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1;; (*TAIR) AT3G03100.1 (e_value=2e-77) | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr3:705564-707578 REVERSE LENGTH=159;; (*ITAG) Solyc03g096940.2.1 (e_value=1e-80) genomic_reference:SL2.40ch03 gene_region:52766913-52772068 transcript_region:SL2.40ch03:52766913..52772068+ go_terms:GO:0050136,GO:0050897 functional_description:"NADH ubiquinone oxidoreductase subunit (AHRD V1 *-** D5RN95_9PROT); contains Interpro domain(s) IPR007763 NADH:ubiquinone oxidoreductase, 17.2 kD subunit "; GO:0050136,GO:0050897 NbS00029356g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.2|1|0.5|0.6|5|0|400; (*GB) gi|357492547|ref|XP_003616562.1| (e_value=7e-95) Laccase [Medicago truncatula];; (*SWP) sp|Q0DHL2|LAC12_ORYSJ (e_value=2e-81) Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=1e-77) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g010990.2.1 (e_value=1e-100) genomic_reference:SL2.40ch09 gene_region:4344657-4347241 transcript_region:SL2.40ch09:4344657..4347241+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00013642g0014.1 protein AED:0.15 eAED:0.15 QI:524|0.88|0.9|1|0.55|0.6|10|405|330; (*GB) gi|225427938|ref|XP_002277315.1| (e_value=3e-161) PREDICTED: magnesium transporter NIPA2 [Vitis vinifera];; (*SWP) sp|Q5R7Q3|NIPA2_PONAB (e_value=1e-62) Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1;; (*TAIR) AT2G21120.1 (e_value=9e-137) | Symbols: | Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328;; (*ITAG) Solyc10g054930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51599205-51603491 transcript_region:SL2.40ch10:51599205..51603491+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C5FBJ1_NANOT); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00013642g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|3|278|557; (*GB) gi|16588566|gb|AAL26842.1|AF313452_1 (e_value=4e-154) thermal hysteresis protein STHP-64 [Solanum dulcamara];; (*SWP) sp|Q9SI37|WRKY1_ARATH (e_value=1e-62) WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1;; (*TAIR) AT2G04880.2 (e_value=1e-66) | Symbols: ZAP1, ATWRKY1, WRKY1 | zinc-dependent activator protein-1 | chr2:1718557-1720219 FORWARD LENGTH=463;; (*ITAG) Solyc07g047960.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56499981-56504055 transcript_region:SL2.40ch07:56499981..56504055- go_terms:GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00013642g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.83|0.57|1|0.5|0.71|7|0|268; (*GB) gi|297737697|emb|CBI26898.3| (e_value=2e-90) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39221|STLP2_ARATH (e_value=9e-65) SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4;; (*TAIR) AT2G01470.1 (e_value=7e-66) | Symbols: STL2P, ATSEC12 | SEC12P-like 2 protein | chr2:212215-214435 REVERSE LENGTH=393;; (*ITAG) Solyc07g047970.2.1 (e_value=6e-140) genomic_reference:SL2.40ch07 gene_region:56506647-56514306 transcript_region:SL2.40ch07:56506647..56514306- go_terms:GO:0000166 functional_description:"Prolactin regulatory element-binding protein (AHRD V1 *--* C0H9F8_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00040795g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.71|0.62|1|0.28|0.25|8|239|361; (*GB) gi|224284516|gb|ACN39991.1| (e_value=1e-160) unknown [Picea sitchensis];; (*SWP) sp|P42825|DNAJ2_ARATH (e_value=1e-136) Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2;; (*TAIR) AT5G22060.1 (e_value=8e-138) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc01g090550.2.1 (e_value=1e-151) genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00032937g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|453; (*GB) gi|225451243|ref|XP_002276425.1| (e_value=5e-89) PREDICTED: uncharacterized protein LOC100253879 [Vitis vinifera];; (*SWP) sp|P27164|CALM3_PETHY (e_value=3e-23) Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2;; (*TAIR) AT5G28040.1 (e_value=3e-52) | Symbols: | DNA-binding storekeeper protein-related transcriptional regulator | chr5:10037654-10038937 REVERSE LENGTH=427;; (*ITAG) Solyc02g083750.1.1 (e_value=3e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41617026-41618291 transcript_region:SL2.40ch02:41617026..41618291- go_terms:GO:0030528 functional_description:"Transcription regulator (AHRD V1 *--* D7L304_ARALY); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; GO:0030528 NbS00002559g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|0.33|0.5|4|0|171; (*GB) gi|17367231|sp|Q9XH43.1|CET2_TOBAC (e_value=2e-117) RecName: Full=CEN-like protein 2;; (*SWP) sp|Q9XH43|CET2_TOBAC (e_value=5e-119) CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1;; (*TAIR) AT2G27550.1 (e_value=3e-96) | Symbols: ATC | centroradialis | chr2:11773417-11774509 FORWARD LENGTH=175;; (*ITAG) Solyc06g074350.2.1 (e_value=3e-112) genomic_reference:SL2.40ch06 gene_region:42361623-42363883 transcript_region:SL2.40ch06:42361623..42363883+ go_terms:GO:0005515,GO:0008429 functional_description:"self-pruning"; GO:0005515,GO:0008429 NbS00016214g0001.1 protein AED:0.17 eAED:0.17 QI:1516|0.88|0.88|1|1|1|18|304|392; (*GB) gi|255538810|ref|XP_002510470.1| (e_value=0.0) vacuolar proton atpase, putative [Ricinus communis];; (*SWP) sp|Q54E04|VATM_DICDI (e_value=2e-88) Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2;; (*TAIR) AT2G21410.1 (e_value=0.0) | Symbols: VHA-A2 | vacuolar proton ATPase A2 | chr2:9162703-9168141 FORWARD LENGTH=821;; (*ITAG) Solyc07g032080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:34607239-34620262 transcript_region:SL2.40ch07:34607239..34620262+ go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00056851g0004.1 protein AED:0.37 eAED:0.43 QI:0|0.5|0.33|1|0|0|3|0|77; (*TAIR) AT4G01440.1 (e_value=7e-13) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:596531-598512 FORWARD LENGTH=365;; (*ITAG) Solyc04g007590.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1271481-1274405 transcript_region:SL2.40ch04:1271481..1274405- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9LI65_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00056851g0005.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|357438899|ref|XP_003589726.1| (e_value=3e-29) Auxin-induced protein 5NG4 [Medicago truncatula];; (*TAIR) AT4G01440.1 (e_value=1e-22) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:596531-598512 FORWARD LENGTH=365;; (*ITAG) Solyc04g007590.1.1 (e_value=4e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1271481-1274405 transcript_region:SL2.40ch04:1271481..1274405- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9LI65_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00006067g0008.1 protein AED:0.01 eAED:0.01 QI:87|1|1|1|1|1|4|339|233; (*GB) gi|225456361|ref|XP_002280221.1| (e_value=2e-91) PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SW33|TL1Y_ARATH (e_value=1e-70) Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1;; (*TAIR) AT4G24930.1 (e_value=1e-71) | Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821496-12822389 REVERSE LENGTH=225;; (*ITAG) Solyc03g019660.2.1 (e_value=8e-109) genomic_reference:SL2.40ch03 gene_region:6617595-6620127 transcript_region:SL2.40ch03:6617595..6620127- functional_description:"Thylakoid lumenal 17.9 kDa protein, chloroplastic (AHRD V1 ***- TL1Y_ARATH)"; NbS00006067g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.5|0.66|1|1|6|265|430; (*GB) gi|224112839|ref|XP_002316306.1| (e_value=8e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|P42696|RBM34_HUMAN (e_value=7e-17) RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2;; (*TAIR) AT3G55340.1 (e_value=2e-83) | Symbols: PHIP1 | phragmoplastin interacting protein 1 | chr3:20515672-20517832 FORWARD LENGTH=597;; (*ITAG) Solyc06g018110.2.1 (e_value=4e-164) genomic_reference:SL2.40ch06 gene_region:13436393-13441892 transcript_region:SL2.40ch06:13436393..13441892- go_terms:GO:0003729 functional_description:"RNA binding protein (AHRD V1 *--* B6TYA4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003729 NbS00018089g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|0.66|3|0|200; (*GB) gi|359481821|ref|XP_002277702.2| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100241927 [Vitis vinifera];; (*TAIR) AT3G57570.1 (e_value=4e-29) | Symbols: | ARM repeat superfamily protein | chr3:21312598-21320105 FORWARD LENGTH=1092; NbS00018089g0007.1 protein AED:0.29 eAED:0.29 QI:64|0.56|0.58|0.88|0.62|0.58|17|391|742; (*GB) gi|334186061|ref|NP_191316.5| (e_value=3e-106) armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana];; (*TAIR) AT3G57570.1 (e_value=6e-109) | Symbols: | ARM repeat superfamily protein | chr3:21312598-21320105 FORWARD LENGTH=1092;; (*ITAG) Solyc03g063700.1.1 (e_value=2e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:32916540-32920894 transcript_region:SL2.40ch03:32916540..32920894+ go_terms:GO:0005488 functional_description:"Zinc finger C2H2-type (AHRD V1 **-- A2Q3M3_MEDTR); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00018089g0008.1 protein AED:0.18 eAED:0.30 QI:28|0.5|0.33|1|0.5|0.33|3|0|158; (*GB) gi|147811288|emb|CAN63342.1| (e_value=2e-44) hypothetical protein VITISV_013819 [Vitis vinifera];; (*TAIR) AT3G57570.1 (e_value=2e-31) | Symbols: | ARM repeat superfamily protein | chr3:21312598-21320105 FORWARD LENGTH=1092; NbS00004191g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=6e-20) NRC1 [Solanum lycopersicum];; (*ITAG) Solyc04g007070.2.1 (e_value=4e-44) genomic_reference:SL2.40ch04 gene_region:791050-796086 transcript_region:SL2.40ch04:791050..796086+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00004191g0008.1 protein AED:0.31 eAED:0.32 QI:0|0.25|0.2|1|0.5|0.4|5|0|765; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=9e-147) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=6e-60) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=5e-34) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00051077g0008.1 protein AED:0.13 eAED:0.13 QI:432|0.5|0.33|1|0.5|0.66|3|0|307; (*GB) gi|21693562|gb|AAM75346.1|AF520810_1 (e_value=2e-118) DNA-binding protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|Q5SMK6|P2C54_ORYSJ (e_value=4e-91) Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=5e-72) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc12g010450.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3471350-3475691 transcript_region:SL2.40ch12:3471350..3475691- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B4FDN2_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00051077g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0|2|1953|499; (*GB) gi|359484696|ref|XP_002267328.2| (e_value=0.0) PREDICTED: putative glycerol-3-phosphate transporter 5-like [Vitis vinifera];; (*SWP) sp|Q9SL56|GLPT5_ARATH (e_value=0.0) Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2;; (*TAIR) AT2G13100.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:5390206-5391764 FORWARD LENGTH=493;; (*ITAG) Solyc12g010440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3468203-3470212 transcript_region:SL2.40ch12:3468203..3470212+ go_terms:GO:0055085 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 ***- C4YY87_9RICK); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00047317g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0.5|0.5|1|1|2|441|154 NbS00002429g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|124; (*ITAG) Solyc11g006240.1.1 (e_value=3e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:992150-992518 transcript_region:SL2.40ch11:992150..992518- functional_description:"Unknown Protein (AHRD V1)"; NbS00042040g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.88|1|0.75|0.66|9|386|625; (*GB) gi|359472802|ref|XP_002271275.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT5-like [Vitis vinifera];; (*SWP) sp|Q8GYW9|PMT4_ARATH (e_value=0.0) Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2;; (*TAIR) AT1G13860.3 (e_value=0.0) | Symbols: QUL1 | QUASIMODO2 LIKE 1 | chr1:4743754-4746256 REVERSE LENGTH=603;; (*ITAG) Solyc05g012450.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5691059-5696583 transcript_region:SL2.40ch05:5691059..5696583- go_terms:GO:0016020 functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00037502g0004.1 protein AED:0.66 eAED:0.66 QI:60|0|0|0.2|0.5|0.6|5|0|90; (*TAIR) AT1G20110.1 (e_value=5e-13) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc04g081750.2.1 (e_value=6e-17) genomic_reference:SL2.40ch04 gene_region:63266616-63275332 transcript_region:SL2.40ch04:63266616..63275332+ go_terms:GO:0005515,GO:0035091 functional_description:"FYVE, RhoGEF and PH domain-containing protein 6 (AHRD V1 *--- FGD6_HUMAN); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00037502g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|0.75|0.8|5|68|355; (*GB) gi|356564382|ref|XP_003550433.1| (e_value=3e-119) PREDICTED: GDSL esterase/lipase EXL3-like isoform 1 [Glycine max];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=4e-106) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=3e-107) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc04g081780.2.1 (e_value=4e-164) genomic_reference:SL2.40ch04 gene_region:63287088-63289104 transcript_region:SL2.40ch04:63287088..63289104+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g20120 (AHRD V1 ***- GDL4_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00000624g0001.1 protein AED:0.20 eAED:0.20 QI:65|0|0.66|1|0|0.33|3|549|325; (*GB) gi|224078874|ref|XP_002305661.1| (e_value=2e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S9T7|VP282_ARATH (e_value=7e-102) Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2;; (*TAIR) AT4G05000.2 (e_value=5e-103) | Symbols: VPS28-1 | Vacuolar protein sorting-associated protein VPS28 family protein | chr4:2563953-2564585 FORWARD LENGTH=210;; (*ITAG) Solyc02g080270.2.1 (e_value=4e-117) genomic_reference:SL2.40ch02 gene_region:39121853-39125587 transcript_region:SL2.40ch02:39121853..39125587- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 28 family protein (AHRD V1 ***- D7MES4_ARALY); contains Interpro domain(s) IPR007143 Vacuolar protein sorting-associated, VPS28 "; GO:0005515 NbS00006453g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|146; (*GB) gi|21633792|gb|AAM55794.1| (e_value=1e-42) PsbE [Porana velutina];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=8e-44) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=6e-45) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00006453g0103.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|401 NbS00006453g0101.1 protein AED:0.28 eAED:0.28 QI:411|1|1|1|0.8|0.83|6|165|394 NbS00006453g0112.1 protein AED:0.30 eAED:0.30 QI:125|1|0.90|1|0.9|0.81|11|0|370 NbS00009804g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.73|0.87|1|0.73|0.68|16|133|1153; (*GB) gi|359486635|ref|XP_002279201.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263302 [Vitis vinifera];; (*TAIR) AT3G12590.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:3996473-4003657 REVERSE LENGTH=1184;; (*ITAG) Solyc06g042950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:25336495-25347915 transcript_region:SL2.40ch06:25336495..25347915- functional_description:"Genomic DNA chromosome 3 P1 clone MMF12 (AHRD V1 ***- Q9LHK2_ARATH)"; NbS00002255g0001.1 protein AED:0.27 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|359474850|ref|XP_002277741.2| (e_value=1e-121) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9XE98|PP303_ARATH (e_value=2e-52) Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1;; (*TAIR) AT3G61170.1 (e_value=6e-59) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=783;; (*ITAG) Solyc01g111430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89439240-89441617 transcript_region:SL2.40ch01:89439240..89441617- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002255g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|359474850|ref|XP_002277741.2| (e_value=4e-92) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9FLZ9|PP405_ARATH (e_value=1e-49) Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1;; (*TAIR) AT5G39350.1 (e_value=1e-50) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15750929-15752962 FORWARD LENGTH=677;; (*ITAG) Solyc01g111430.2.1 (e_value=4e-141) genomic_reference:SL2.40ch01 gene_region:89439240-89441617 transcript_region:SL2.40ch01:89439240..89441617- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002255g0017.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|0.75|0.33|0.75|4|0|183; (*GB) gi|82621184|gb|ABB86280.1| (e_value=7e-73) proteasome-like protein alpha subunit-like [Solanum tuberosum];; (*SWP) sp|O24030|PSA7_SOLLC (e_value=5e-74) Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1;; (*TAIR) AT3G51260.1 (e_value=3e-68) | Symbols: PAD1 | 20S proteasome alpha subunit PAD1 | chr3:19031086-19032746 FORWARD LENGTH=250;; (*ITAG) Solyc01g111450.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:89446679-89449724 transcript_region:SL2.40ch01:89446679..89449724+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT8_SOLTU); contains Interpro domain(s) IPR000426 Proteasome, alpha-subunit, conserved site "; GO:0019773,GO:0005839 NbS00002255g0005.1 protein AED:0.14 eAED:0.14 QI:889|1|1|1|0.5|0.4|5|324|240; (*GB) gi|255587380|ref|XP_002534253.1| (e_value=1e-103) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17840.1 (e_value=1e-87) | Symbols: ERD7 | Senescence/dehydration-associated protein-related | chr2:7755923-7757798 REVERSE LENGTH=452;; (*ITAG) Solyc01g111440.2.1 (e_value=9e-128) genomic_reference:SL2.40ch01 gene_region:89441082-89454437 transcript_region:SL2.40ch01:89441082..89454437+ functional_description:"Senescence-associated protein 12 (AHRD V1 *-*- O81657_HEMSP); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00002255g0019.1 protein AED:0.26 eAED:0.29 QI:283|0.69|0.64|0.85|0.61|0.64|14|0|664; (*GB) gi|225453064|ref|XP_002268977.1| (e_value=6e-124) PREDICTED: uncharacterized protein LOC100255283 [Vitis vinifera];; (*SWP) sp|Q7Z6K3|PTAR1_HUMAN (e_value=2e-14) Protein prenyltransferase alpha subunit repeat-containing protein 1 OS=Homo sapiens GN=PTAR1 PE=2 SV=2;; (*TAIR) AT1G10095.1 (e_value=2e-108) | Symbols: | Protein prenylyltransferase superfamily protein | chr1:3297478-3300353 REVERSE LENGTH=420;; (*ITAG) Solyc01g111410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89429434-89436218 transcript_region:SL2.40ch01:89429434..89436218+ go_terms:GO:0018346 functional_description:"Protein prenyltransferase alpha subunit repeat-containing protein 1 (AHRD V1 *-*- PTAR1_HUMAN); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0018346 NbS00021061g0113.1 protein AED:0.08 eAED:0.09 QI:149|0.66|0.71|1|0.33|0.42|7|201|237 NbS00021061g0110.1 protein AED:0.40 eAED:0.40 QI:0|1|0.75|1|1|1|4|0|187 NbS00021542g0006.1 protein AED:0.12 eAED:0.18 QI:0|0|0|1|0.5|0.4|5|0|434; (*GB) gi|225453983|ref|XP_002280446.1| (e_value=3e-165) PREDICTED: pectinesterase 2 [Vitis vinifera];; (*SWP) sp|O04887|PME2_CITSI (e_value=6e-148) Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1;; (*TAIR) AT2G45220.1 (e_value=6e-140) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc01g091050.2.1 (e_value=3e-167) genomic_reference:SL2.40ch01 gene_region:76528228-76531144 transcript_region:SL2.40ch01:76528228..76531144- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD90_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00034511g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|376; (*GB) gi|156763850|emb|CAO99127.1| (e_value=0.0) strictosidine synthase-like protein [Nicotiana tabacum];; (*SWP) sp|P94111|STS1_ARATH (e_value=3e-57) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=1e-158) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc04g040090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30930532-30935583 transcript_region:SL2.40ch04:30930532..30935583+ go_terms:GO:0005515,GO:0004064 functional_description:"Strictosidine synthase-like protein (AHRD V1 ***- A7WPL3_TOBAC); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0005515,GO:0004064 NbS00034511g0007.1 protein AED:0.09 eAED:0.14 QI:190|0.5|0.33|1|1|1|3|0|348; (*GB) gi|224139738|ref|XP_002323253.1| (e_value=2e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|P94111|STS1_ARATH (e_value=8e-28) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT2G41290.1 (e_value=4e-80) | Symbols: SSL2 | strictosidine synthase-like 2 | chr2:17210599-17212904 REVERSE LENGTH=376;; (*ITAG) Solyc10g079610.1.1 (e_value=7e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00020072g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.4|0.5|0.4|5|0|196; (*ITAG) Solyc08g044370.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00020072g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|0|0.5|2|0|130; (*ITAG) Solyc08g074530.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00020072g0006.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|0|0|2|0|181; (*GB) gi|53749448|gb|AAU90304.1| (e_value=4e-33) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc04g071390.1.1 (e_value=5e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00016608g0004.1 protein AED:0.23 eAED:0.23 QI:71|0.66|0.85|1|0.5|0.57|7|212|224; (*GB) gi|357114294|ref|XP_003558935.1| (e_value=5e-87) PREDICTED: uncharacterized protein LOC100839343 [Brachypodium distachyon];; (*TAIR) AT1G63830.3 (e_value=2e-82) | Symbols: | PLAC8 family protein | chr1:23685408-23687098 FORWARD LENGTH=232;; (*ITAG) Solyc12g056210.1.1 (e_value=9e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47526767-47531237 transcript_region:SL2.40ch12:47526767..47531237- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00008312g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|191; (*GB) gi|255569812|ref|XP_002525870.1| (e_value=1e-58) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=7e-36) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT1G14440.2 (e_value=3e-52) | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31 | chr1:4939076-4940014 REVERSE LENGTH=312;; (*ITAG) Solyc01g102980.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:83400300-83402189 transcript_region:SL2.40ch01:83400300..83402189+ go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbS00016137g0009.1 protein AED:0.00 eAED:0.00 QI:25|1|1|1|0.66|0.75|4|0|118; (*GB) gi|297743374|emb|CBI36241.3| (e_value=4e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11470.1 (e_value=9e-20) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr5:3662757-3667041 REVERSE LENGTH=757;; (*ITAG) Solyc11g012810.1.1 (e_value=2e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5572669-5592438 transcript_region:SL2.40ch11:5572669..5592438+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016137g0008.1 protein AED:0.12 eAED:0.15 QI:71|0.71|0.37|0.75|0.85|0.75|8|0|381; (*GB) gi|224058709|ref|XP_002299614.1| (e_value=1e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11470.1 (e_value=1e-48) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr5:3662757-3667041 REVERSE LENGTH=757;; (*ITAG) Solyc02g069810.1.1 (e_value=2e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34210801-34220288 transcript_region:SL2.40ch02:34210801..34220288- go_terms:GO:0003677 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677 NbS00004452g0011.1 protein AED:0.11 eAED:0.11 QI:268|1|1|1|1|1|5|211|188; (*GB) gi|225447282|ref|XP_002279330.1| (e_value=3e-82) PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-40) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=6e-79) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc07g052380.2.1 (e_value=6e-92) genomic_reference:SL2.40ch07 gene_region:58220177-58223570 transcript_region:SL2.40ch07:58220177..58223570+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00004452g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|2|157|323; (*GB) gi|297830862|ref|XP_002883313.1| (e_value=6e-153) mate efflux family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=8e-83) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=2e-152) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc12g005850.1.1 (e_value=2e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:481937-488981 transcript_region:SL2.40ch12:481937..488981- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00004452g0013.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|1|0|2|0|66; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=9e-17) hypothetical protein [Nicotiana tabacum]; NbS00007647g0005.1 protein AED:0.09 eAED:0.09 QI:423|0.83|0.84|1|0.66|0.61|13|324|702; (*GB) gi|225444363|ref|XP_002266688.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=0.0) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=0.0) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc10g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:239692-245015 transcript_region:SL2.40ch10:239692..245015- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00023815g0002.1 protein AED:0.10 eAED:0.10 QI:141|1|1|1|0|0|4|697|78; (*GB) gi|224118308|ref|XP_002331450.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT4G29735.1 (e_value=6e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14562962-14564277 REVERSE LENGTH=76;; (*ITAG) Solyc12g008860.1.1 (e_value=5e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2195406-2198052 transcript_region:SL2.40ch12:2195406..2198052- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007915 Uncharacterised protein family UPF0197 "; NbS00028482g0015.1 protein AED:0.25 eAED:0.29 QI:0|0.83|0.57|1|1|0.85|7|0|972; (*GB) gi|225457602|ref|XP_002272934.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera];; (*SWP) sp|Q55GJ2|IREA_DICDI (e_value=4e-79) Probable serine/threonine-protein kinase ireA OS=Dictyostelium discoideum GN=ireA PE=3 SV=1;; (*TAIR) AT2G17520.1 (e_value=0.0) | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclease/protein kinase IRE1-like | chr2:7617504-7620929 FORWARD LENGTH=841;; (*ITAG) Solyc04g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63835558-63843020 transcript_region:SL2.40ch04:63835558..63843020- go_terms:GO:0006468,GO:0006397 functional_description:"Serine threonine-protein kinase (AHRD V1 *-*- Q16QF5_AEDAE); contains Interpro domain(s) IPR010513 Ribonuclease L "; GO:0006468,GO:0006397 NbS00028482g0017.1 protein AED:0.26 eAED:0.27 QI:0|0.57|0.25|1|0.71|0.5|8|0|952; (*GB) gi|357933579|dbj|BAL15056.1| (e_value=0.0) glutamate receptor 3.3 [Solanum lycopersicum];; (*SWP) sp|Q9C8E7|GLR33_ARATH (e_value=0.0) Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1;; (*TAIR) AT1G42540.1 (e_value=0.0) | Symbols: ATGLR3.3, GLR3.3 | glutamate receptor 3.3 | chr1:15973489-15976703 FORWARD LENGTH=933;; (*ITAG) Solyc04g082610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63830521-63835334 transcript_region:SL2.40ch04:63830521..63835334+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00028482g0001.1 protein AED:0.36 eAED:0.36 QI:86|0.87|0.77|1|1|1|9|9|191; (*GB) gi|255539272|ref|XP_002510701.1| (e_value=5e-82) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q2L6L1|CNPY1_DANRE (e_value=9e-14) Protein canopy-1 OS=Danio rerio GN=cnpy1 PE=1 SV=1;; (*TAIR) AT1G42480.1 (e_value=4e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:15936297-15938692 FORWARD LENGTH=182;; (*ITAG) Solyc04g082590.2.1 (e_value=5e-118) genomic_reference:SL2.40ch04 gene_region:63817382-63821548 transcript_region:SL2.40ch04:63817382..63821548+ functional_description:"Canopy homolog 2 (AHRD V1 ***- C1BWT2_ESOLU)"; NbS00008527g0008.1 protein AED:0.13 eAED:0.13 QI:253|0.33|0.25|1|0|0.25|4|0|549; (*GB) gi|195536980|dbj|BAG68210.1| (e_value=0.0) lectin receptor kinase-like protein [Nicotiana benthamiana];; (*SWP) sp|Q9LFH9|LRK81_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase VIII.1 OS=Arabidopsis thaliana GN=LECRK81 PE=1 SV=1;; (*TAIR) AT3G53380.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:19789204-19791351 REVERSE LENGTH=715;; (*ITAG) Solyc10g084250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63196795-63198960 transcript_region:SL2.40ch10:63196795..63198960+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00008527g0006.1 protein AED:0.25 eAED:0.26 QI:146|0|0.5|1|1|1|2|0|87; (*GB) gi|255568386|ref|XP_002525167.1| (e_value=7e-18) DNA-binding protein S1FA, putative [Ricinus communis];; (*ITAG) Solyc09g007500.2.1 (e_value=9e-20) genomic_reference:SL2.40ch09 gene_region:1075063-1077700 transcript_region:SL2.40ch09:1075063..1077700- go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006779 DNA binding protein S1FA "; GO:0005634 NbS00017142g0006.1 protein AED:0.30 eAED:0.30 QI:228|0.4|0.33|0.83|0.8|0.66|6|0|152; (*GB) gi|296082089|emb|CBI21094.3| (e_value=1e-23) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=4e-25) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=8e-25) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=6e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00017142g0001.1 protein AED:0.08 eAED:0.08 QI:133|0.83|0.85|1|0.66|0.57|7|504|373; (*GB) gi|3021506|emb|CAA65502.1| (e_value=0.0) isocitrate dehydrogenase (NAD+) [Nicotiana tabacum];; (*SWP) sp|P29696|LEU3_SOLTU (e_value=0.0) 3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G03290.1 (e_value=0.0) | Symbols: IDH-V | isocitrate dehydrogenase V | chr5:794043-795939 FORWARD LENGTH=374;; (*ITAG) Solyc08g077930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58989265-58994758 transcript_region:SL2.40ch08:58989265..58994758- go_terms:GO:0005524,GO:0008270 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- Q17P79_AEDAE); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0005524,GO:0008270 NbS00034726g0004.1 protein AED:0.27 eAED:0.27 QI:207|1|1|1|0.88|0.8|10|199|416; (*GB) gi|359482400|ref|XP_002268800.2| (e_value=0.0) PREDICTED: COBW domain-containing protein 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8IUF1|CBWD2_HUMAN (e_value=6e-61) COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1;; (*TAIR) AT1G80480.1 (e_value=6e-179) | Symbols: PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH=444;; (*ITAG) Solyc03g117430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60652978-60660774 transcript_region:SL2.40ch03:60652978..60660774+ go_terms:GO:0005515,GO:0003824 functional_description:"Cobalamin synthesis protein P (AHRD V1 ***- D3M8Z8_9ACTO); contains Interpro domain(s) IPR003495 Cobalamin (vitamin B12) biosynthesis CobW-like "; GO:0005515,GO:0003824 NbS00028062g0004.1 protein AED:0.12 eAED:0.13 QI:0|1|0|1|1|1|2|0|930; (*GB) gi|147798019|emb|CAN69461.1| (e_value=0.0) hypothetical protein VITISV_043132 [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc12g098570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64377333-64380660 transcript_region:SL2.40ch12:64377333..64380660- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00032182g0005.1 protein AED:0.16 eAED:0.16 QI:454|0.86|0.81|1|0.46|0.5|16|508|632; (*GB) gi|225442347|ref|XP_002281123.1| (e_value=0.0) PREDICTED: NADP-specific glutamate dehydrogenase-like [Vitis vinifera];; (*SWP) sp|P28724|DHE4_GIAIN (e_value=2e-127) NADP-specific glutamate dehydrogenase OS=Giardia intestinalis PE=2 SV=1;; (*TAIR) AT1G51720.1 (e_value=0.0) | Symbols: | Amino acid dehydrogenase family protein | chr1:19181741-19186297 FORWARD LENGTH=637;; (*ITAG) Solyc01g068210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69699190-69709191 transcript_region:SL2.40ch01:69699190..69709191+ go_terms:GO:0008152,GO:0055114 functional_description:"Glutamate dehydrogenase (AHRD V1 ***- A2TQI4_9FLAO); contains Interpro domain(s) IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase "; GO:0008152,GO:0055114 NbS00005407g0002.1 protein AED:0.16 eAED:0.16 QI:823|0.5|0.4|1|1|1|5|0|364; (*GB) gi|359491840|ref|XP_002271454.2| (e_value=2e-175) PREDICTED: serine/threonine-protein kinase PBS1-like [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=4e-148) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G20650.1 (e_value=5e-167) | Symbols: | Protein kinase superfamily protein | chr1:7158422-7160022 REVERSE LENGTH=381;; (*ITAG) Solyc04g082510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63756768-63760104 transcript_region:SL2.40ch04:63756768..63760104- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00026895g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.5|1|0.8|0.66|6|0|376; (*GB) gi|224115292|ref|XP_002316993.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54860.1 (e_value=6e-67) | Symbols: | Major facilitator superfamily protein | chr5:22284721-22287025 FORWARD LENGTH=491;; (*ITAG) Solyc12g005140.1.1 (e_value=6e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:105280-111748 transcript_region:SL2.40ch12:105280..111748- go_terms:GO:0005215 functional_description:"Folate/biopterin transporter family protein (AHRD V1 **** B6TYM7_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00054519g0003.1 protein AED:0.18 eAED:0.18 QI:173|0.91|0.84|1|0.75|0.84|13|1465|408; (*GB) gi|225441189|ref|XP_002269812.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250368 [Vitis vinifera];; (*SWP) sp|Q8NFF5|FAD1_HUMAN (e_value=5e-42) FAD synthase OS=Homo sapiens GN=FLAD1 PE=1 SV=1;; (*TAIR) AT5G03430.1 (e_value=0.0) | Symbols: | phosphoadenosine phosphosulfate (PAPS) reductase family protein | chr5:849237-852867 REVERSE LENGTH=497;; (*ITAG) Solyc09g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1757098-1772595 transcript_region:SL2.40ch09:1757098..1772595- go_terms:GO:0008152,GO:0006777 functional_description:"CinA-like protein (AHRD V1 *--- CINAL_BACFN); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase "; GO:0008152,GO:0006777 NbS00002863g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|388521825|gb|AFK48974.1| (e_value=3e-35) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=4e-34) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g011060.1.1 (e_value=7e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3931559-3932709 transcript_region:SL2.40ch12:3931559..3932709+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00002863g0004.1 protein AED:0.27 eAED:0.27 QI:171|0.5|0.66|0.66|0.5|0.66|3|0|120; (*GB) gi|388521825|gb|AFK48974.1| (e_value=2e-39) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=4e-40) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g006600.1.1 (e_value=4e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1083786-1084309 transcript_region:SL2.40ch12:1083786..1084309+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00002863g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0.5|0.75|0|0|4|172|93; (*GB) gi|388521825|gb|AFK48974.1| (e_value=2e-25) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=1e-23) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g011060.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3931559-3932709 transcript_region:SL2.40ch12:3931559..3932709+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00015547g0006.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.66|0|0.33|3|0|133; (*GB) gi|351653908|ref|YP_004891654.1| (e_value=5e-25) unnamed protein product (chloroplast) [Nicotiana undulata]; NbS00015547g0007.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|81 NbS00008552g0004.1 protein AED:0.19 eAED:0.19 QI:16|1|1|1|0.57|0.5|8|487|502; (*GB) gi|225462928|ref|XP_002265858.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-86) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G14020.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:4802930-4805111 FORWARD LENGTH=499;; (*ITAG) Solyc05g013140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6230026-6235354 transcript_region:SL2.40ch05:6230026..6235354+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00017448g0006.1 protein AED:0.03 eAED:0.13 QI:0|0|0|1|0|0|2|0|457; (*GB) gi|350539854|ref|NP_001233783.1| (e_value=2e-120) TCP transcription factor 1 [Solanum lycopersicum];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=2e-34) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=2e-35) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc02g077250.2.1 (e_value=2e-123) genomic_reference:SL2.40ch02 gene_region:36822112-36823838 transcript_region:SL2.40ch02:36822112..36823838- functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00004040g0002.1 protein AED:0.14 eAED:0.16 QI:137|0|0.5|1|0|0.5|2|0|457; (*GB) gi|255545349|ref|XP_002513735.1| (e_value=8e-65) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0V865|FAFL_ARATH (e_value=2e-38) Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1;; (*TAIR) AT5G22090.2 (e_value=2e-39) | Symbols: | Protein of unknown function (DUF3049) | chr5:7315003-7316394 REVERSE LENGTH=463;; (*ITAG) Solyc01g009260.1.1 (e_value=1e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3288675-3290090 transcript_region:SL2.40ch01:3288675..3290090+ functional_description:"60S ribosomal protein L5, mitochondrial (AHRD V1 *-*- RM05_SOLTU)"; NbS00004040g0008.1 protein AED:0.24 eAED:0.24 QI:383|0.95|0.95|1|0.90|0.90|22|384|971; (*GB) gi|365222948|gb|AEW69826.1| (e_value=0.0) Hop-interacting protein THI140 [Solanum lycopersicum];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc01g009280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3302809-3320461 transcript_region:SL2.40ch01:3302809..3320461- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** D7LGU6_ARALY); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00004040g0004.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|1|1|2|0|86 NbS00008645g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|242; (*GB) gi|147792212|emb|CAN72981.1| (e_value=2e-61) hypothetical protein VITISV_009032 [Vitis vinifera];; (*SWP) sp|Q8LC79|GAT18_ARATH (e_value=7e-38) GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2;; (*TAIR) AT3G50870.1 (e_value=6e-39) | Symbols: MNP, HAN, GATA18 | GATA type zinc finger transcription factor family protein | chr3:18911112-18912369 FORWARD LENGTH=295;; (*ITAG) Solyc02g062760.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:29117051-29118046 transcript_region:SL2.40ch02:29117051..29118046+ go_terms:GO:0030374 functional_description:"GATA transcription factor 19 (AHRD V1 *-** B6TS85_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0030374 NbS00008645g0007.1 protein AED:0.20 eAED:0.24 QI:59|0.71|0.8|1|0.5|0.46|15|0|384; (*GB) gi|225430744|ref|XP_002266704.1| (e_value=5e-154) PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera];; (*SWP) sp|Q93YP9|ERDL4_ARATH (e_value=6e-146) Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1;; (*TAIR) AT1G19450.1 (e_value=5e-147) | Symbols: | Major facilitator superfamily protein | chr1:6731671-6734633 REVERSE LENGTH=488;; (*ITAG) Solyc02g062750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29104055-29107946 transcript_region:SL2.40ch02:29104055..29107946+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00029872g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.55|0.77|0.87|0.88|9|111|377; (*GB) gi|359486529|ref|XP_002276963.2| (e_value=8e-137) PREDICTED: transcription factor GTE1-like [Vitis vinifera];; (*SWP) sp|Q84XV2|GTE1_ARATH (e_value=1e-92) Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1;; (*TAIR) AT2G34900.1 (e_value=9e-94) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386;; (*ITAG) Solyc09g015660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:10656313-10667870 transcript_region:SL2.40ch09:10656313..10667870+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- B0S7P2_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00035674g0021.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|248; (*GB) gi|225437836|ref|XP_002263559.1| (e_value=2e-90) PREDICTED: LOB domain-containing protein 16 [Vitis vinifera];; (*SWP) sp|Q9SLB7|LBD16_ARATH (e_value=3e-69) LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1;; (*TAIR) AT2G42430.1 (e_value=2e-70) | Symbols: LBD16, ASL18 | lateral organ boundaries-domain 16 | chr2:17663668-17665153 FORWARD LENGTH=245;; (*ITAG) Solyc09g066260.2.1 (e_value=7e-103) genomic_reference:SL2.40ch09 gene_region:60284729-60286423 transcript_region:SL2.40ch09:60284729..60286423+ functional_description:"LOB domain protein-like (AHRD V1 *-*- Q6K713_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00035674g0024.1 protein AED:0.20 eAED:0.20 QI:137|0.95|0.90|0.95|0.85|0.90|21|0|1122; (*GB) gi|359480257|ref|XP_003632422.1| (e_value=0.0) PREDICTED: poly [ADP-ribose] polymerase 1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZP54|PARP1_ARATH (e_value=0.0) Poly [ADP-ribose] polymerase 1 OS=Arabidopsis thaliana GN=PARP1 PE=1 SV=2;; (*TAIR) AT2G31320.1 (e_value=0.0) | Symbols: PARP2, ATPARP2 | poly(ADP-ribose) polymerase 2 | chr2:13354046-13359578 REVERSE LENGTH=983;; (*ITAG) Solyc03g117970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61001222-61010499 transcript_region:SL2.40ch03:61001222..61010499+ go_terms:GO:0003950 functional_description:"Novel protein similar to vertebrate ADP-ribosyltransferase (NAD+ poly (ADP-ribose) polymerase) (ADPRT) (AHRD V1 **** Q5RHR0_DANRE); contains Interpro domain(s) IPR008288 NAD+ ADP-ribosyltransferase "; GO:0003950 NbS00035674g0023.1 protein AED:0.18 eAED:0.31 QI:67|0|0.16|1|0|0.16|6|0|282; (*ITAG) Solyc01g073870.2.1 (e_value=2e-60) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00035674g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|232; (*GB) gi|147775931|emb|CAN75719.1| (e_value=1e-84) hypothetical protein VITISV_037620 [Vitis vinifera];; (*SWP) sp|Q9M2J7|LBD29_ARATH (e_value=7e-55) LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1;; (*TAIR) AT3G58190.1 (e_value=5e-56) | Symbols: LBD29, ASL16 | lateral organ boundaries-domain 29 | chr3:21548716-21549488 REVERSE LENGTH=218;; (*ITAG) Solyc09g066270.2.1 (e_value=1e-108) genomic_reference:SL2.40ch09 gene_region:60295041-60296015 transcript_region:SL2.40ch09:60295041..60296015- functional_description:"LOB domain protein 14 (AHRD V1 ***- D7LD16_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00035674g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|0|223 NbS00035674g0022.1 protein AED:0.33 eAED:0.40 QI:225|0.4|0.5|0.83|0.6|0.83|6|0|163; (*GB) gi|225437830|ref|XP_002262985.1| (e_value=2e-54) PREDICTED: bet1-like SNARE 1-1 [Vitis vinifera];; (*SWP) sp|Q9M2J9|BET11_ARATH (e_value=3e-48) Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1;; (*TAIR) AT3G58170.1 (e_value=2e-49) | Symbols: ATBS14A, ATBET11, BET11, BS14A | BET1P/SFT1P-like protein 14A | chr3:21542632-21543775 REVERSE LENGTH=122;; (*ITAG) Solyc06g008520.2.1 (e_value=6e-57) genomic_reference:SL2.40ch06 gene_region:2406671-2410266 transcript_region:SL2.40ch06:2406671..2410266+ go_terms:GO:0005484 functional_description:"BET1 (AHRD V1 ***- B6U0C6_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00001683g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.77|1|0.75|0.77|9|10|387; (*GB) gi|359491921|ref|XP_002273353.2| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera];; (*SWP) sp|Q7T3I7|RBM38_XENLA (e_value=1e-33) RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2;; (*TAIR) AT1G76460.1 (e_value=3e-72) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28686932-28688506 REVERSE LENGTH=285;; (*ITAG) Solyc02g082270.2.1 (e_value=1e-161) genomic_reference:SL2.40ch02 gene_region:40551327-40555793 transcript_region:SL2.40ch02:40551327..40555793+ go_terms:GO:0008266 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00026171g0004.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.85|0.95|1|1|21|315|637; (*GB) gi|225452442|ref|XP_002277585.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264532 [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=9e-97) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT5G14720.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4748212-4752642 REVERSE LENGTH=674;; (*ITAG) Solyc02g086790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43977942-43987261 transcript_region:SL2.40ch02:43977942..43987261- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00026171g0005.1 protein AED:0.48 eAED:0.61 QI:0|0|0|1|1|1|3|0|71 NbS00026171g0006.1 protein AED:0.56 eAED:0.75 QI:0|0|0.33|0.66|1|1|3|12|86; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=2e-37) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=6e-36) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.1 (e_value=5e-37) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15014070 REVERSE LENGTH=497;; (*ITAG) Solyc08g078650.2.1 (e_value=6e-42) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00019884g0016.1 protein AED:0.04 eAED:0.04 QI:0|0|0.33|1|1|1|3|206|769; (*GB) gi|225458729|ref|XP_002283062.1| (e_value=0.0) PREDICTED: putative receptor protein kinase ZmPK1-like [Vitis vinifera];; (*SWP) sp|P17801|KPRO_MAIZE (e_value=1e-180) Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2;; (*TAIR) AT4G00340.1 (e_value=5e-100) | Symbols: RLK4 | receptor-like protein kinase 4 | chr4:148958-151496 FORWARD LENGTH=818;; (*ITAG) Solyc04g078410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60747473-60750378 transcript_region:SL2.40ch04:60747473..60750378+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor protein kinase-like (AHRD V1 **** Q5QLM8_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00019884g0011.1 protein AED:0.14 eAED:0.14 QI:165|0.66|0.6|0.9|0.88|0.9|10|433|341; (*GB) gi|302142251|emb|CBI19454.3| (e_value=1e-106) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6AYU1|MO4L1_RAT (e_value=6e-42) Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1;; (*TAIR) AT4G37280.1 (e_value=1e-90) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc04g078400.2.1 (e_value=5e-130) genomic_reference:SL2.40ch04 gene_region:60737092-60744774 transcript_region:SL2.40ch04:60737092..60744774+ go_terms:GO:0047485 functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR008676 MRG "; GO:0047485 NbS00019884g0018.1 protein AED:0.02 eAED:0.02 QI:0|0.8|0.66|0.83|0.6|0.5|6|152|141; (*GB) gi|224103039|ref|XP_002312899.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40270.1 (e_value=2e-32) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc05g005610.2.1 (e_value=6e-44) genomic_reference:SL2.40ch05 gene_region:431509-433313 transcript_region:SL2.40ch05:431509..433313+ functional_description:"SAM domain and HD domain-containing protein 1 (AHRD V1 ***- SAMH1_BOVIN)"; NbS00019884g0017.1 protein AED:0.34 eAED:0.34 QI:173|1|0.5|1|0.66|0.5|4|0|111; (*GB) gi|225459158|ref|XP_002285712.1| (e_value=4e-53) PREDICTED: bet1-like protein At4g14600 [Vitis vinifera];; (*SWP) sp|Q8VXX9|BETL1_ARATH (e_value=6e-50) Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1;; (*TAIR) AT4G14600.1 (e_value=5e-51) | Symbols: | Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137;; (*ITAG) Solyc04g074940.2.1 (e_value=1e-73) genomic_reference:SL2.40ch04 gene_region:58422233-58425274 transcript_region:SL2.40ch04:58422233..58425274- go_terms:GO:0005484 functional_description:"Bet1-like protein At4g14600 (AHRD V1 **-- BETL1_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00026651g0006.1 protein AED:0.29 eAED:0.29 QI:88|0.86|0.87|1|0.8|0.75|16|412|469; (*GB) gi|356577153|ref|XP_003556692.1| (e_value=3e-155) PREDICTED: uncharacterized hydrolase yugF-like [Glycine max];; (*SWP) sp|Q8KZP5|MHPC_COMTE (e_value=3e-14) 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Comamonas testosteroni GN=mhpC PE=1 SV=1;; (*TAIR) AT1G13820.1 (e_value=6e-142) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:4735622-4737617 FORWARD LENGTH=339;; (*ITAG) Solyc05g012370.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5634334-5638589 transcript_region:SL2.40ch05:5634334..5638589+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MJQ7_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00010670g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|161701447|gb|ABX75541.1| (e_value=4e-61) 60S ribosomal protein L17-like protein [Panax ginseng];; (*SWP) sp|Q07760|RL23_TOBAC (e_value=2e-62) 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1;; (*TAIR) AT3G04400.1 (e_value=5e-63) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00056409g0003.1 protein AED:0.00 eAED:0.00 QI:204|1|0.5|1|1|1|2|0|142; (*GB) gi|51849627|dbj|BAD42345.1| (e_value=4e-60) sorbitol transporter [Malus x domestica];; (*SWP) sp|Q9XIH6|PLT2_ARATH (e_value=5e-56) Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1;; (*TAIR) AT2G16130.1 (e_value=4e-57) | Symbols: PMT2, ATPMT2 | polyol/monosaccharide transporter 2 | chr2:7002322-7004043 FORWARD LENGTH=511;; (*ITAG) Solyc01g109460.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:88167522-88170694 transcript_region:SL2.40ch01:88167522..88170694+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_RAT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00002379g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|76573353|gb|ABA46781.1| (e_value=2e-50) unknown [Solanum tuberosum];; (*TAIR) AT3G02790.1 (e_value=1e-43) | Symbols: | zinc finger (C2H2 type) family protein | chr3:604926-605243 FORWARD LENGTH=105;; (*ITAG) Solyc04g056350.1.1 (e_value=3e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:53261172-53261489 transcript_region:SL2.40ch04:53261172..53261489+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZL2_ARALY)"; GO:0003700 NbS00002379g0006.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|3|0|190; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002379g0005.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|0|0|3|0|109; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-20) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00018788g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|642; (*GB) gi|359481040|ref|XP_002266469.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Vitis vinifera];; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc09g090220.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65118730-65121146 transcript_region:SL2.40ch09:65118730..65121146+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00015619g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.8|1|1|1|5|347|312; (*GB) gi|297737175|emb|CBI26376.3| (e_value=2e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q682V0|XRCC4_ARATH (e_value=5e-80) DNA repair protein XRCC4 OS=Arabidopsis thaliana GN=XRCC4 PE=1 SV=2;; (*TAIR) AT3G23100.2 (e_value=4e-81) | Symbols: XRCC4 | homolog of human DNA ligase iv-binding protein XRCC4 | chr3:8220721-8221991 FORWARD LENGTH=264;; (*ITAG) Solyc06g053770.2.1 (e_value=4e-123) genomic_reference:SL2.40ch06 gene_region:33115684-33119235 transcript_region:SL2.40ch06:33115684..33119235- go_terms:GO:0008022 functional_description:"DNA repair protein XRCC4 (AHRD V1 ***- XRCC4_ARATH); contains Interpro domain(s) IPR014751 DNA double-strand break repair and VJ recombination XRCC4, C-terminal "; GO:0008022 NbC25652957g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|357487057|ref|XP_003613816.1| (e_value=1e-25) RING finger protein [Medicago truncatula];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=8e-18) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT1G26800.1 (e_value=2e-25) | Symbols: | RING/U-box superfamily protein | chr1:9285576-9286190 REVERSE LENGTH=204;; (*ITAG) Solyc02g067260.1.1 (e_value=2e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:32026780-32029843 transcript_region:SL2.40ch02:32026780..32029843- go_terms:GO:0008270 functional_description:"RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017928g0008.1 protein AED:0.23 eAED:0.24 QI:0|0.75|0.44|0.88|0.87|0.88|9|525|422; (*GB) gi|255555887|ref|XP_002518979.1| (e_value=4e-149) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT2G35500.1 (e_value=2e-142) | Symbols: SKL2 | shikimate kinase like 2 | chr2:14914038-14915909 FORWARD LENGTH=387;; (*ITAG) Solyc08g076410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57590045-57594371 transcript_region:SL2.40ch08:57590045..57594371+ functional_description:"Shikimate kinase-like protein (AHRD V1 **-- B9GZJ5_POPTR); contains Interpro domain(s) IPR017447 CS "; NbS00017928g0001.1 protein AED:0.25 eAED:0.25 QI:0|0.9|0.63|1|1|1|11|0|843; (*GB) gi|225427118|ref|XP_002276932.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266131 [Vitis vinifera];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=1e-67) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc08g076390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57566162-57571967 transcript_region:SL2.40ch08:57566162..57571967+ go_terms:GO:0005634 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634 NbS00022778g0012.1 protein AED:0.15 eAED:0.15 QI:100|0.88|0.8|1|1|1|10|0|772; (*GB) gi|255558560|ref|XP_002520305.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=6e-69) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT1G77280.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr1:29031468-29035882 REVERSE LENGTH=794;; (*ITAG) Solyc04g057930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54193911-54198180 transcript_region:SL2.40ch04:54193911..54198180+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00022778g0011.1 protein AED:0.22 eAED:0.22 QI:193|1|0.5|1|1|1|4|316|130; (*GB) gi|357125783|ref|XP_003564569.1| (e_value=3e-91) PREDICTED: 40S ribosomal protein S15a-1-like [Brachypodium distachyon];; (*SWP) sp|P42798|R15A1_ARATH (e_value=2e-92) 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2;; (*TAIR) AT5G59850.1 (e_value=1e-93) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc03g121370.2.1 (e_value=2e-44) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00022778g0007.1 protein AED:0.22 eAED:0.26 QI:0|0|0|1|1|1|3|0|197; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-35) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=1e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00022705g0002.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0|3|0|208; (*GB) gi|81301554|ref|YP_398851.1| (e_value=4e-84) RNA polymerase beta subunit [Nicotiana tomentosiformis];; (*SWP) sp|Q33C46|RPOB_NICTO (e_value=1e-85) DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=7e-79) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc10g017920.1.1 (e_value=5e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6080333-6081181 transcript_region:SL2.40ch10:6080333..6081181- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WDN4_CORFO); contains Interpro domain(s) IPR007642 RNA polymerase Rpb2, domain 2 "; GO:0006350 NbS00043398g0003.1 protein AED:0.09 eAED:0.09 QI:173|0.75|0.8|1|0.75|0.8|5|276|427; (*GB) gi|255555705|ref|XP_002518888.1| (e_value=6e-171) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q2TBW5|ZNHI2_BOVIN (e_value=1e-24) Zinc finger HIT domain-containing protein 2 OS=Bos taurus GN=ZNHIT2 PE=2 SV=1;; (*TAIR) AT5G63830.1 (e_value=6e-135) | Symbols: | HIT-type Zinc finger family protein | chr5:25543585-25544802 REVERSE LENGTH=405;; (*ITAG) Solyc08g082960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62762872-62766598 transcript_region:SL2.40ch08:62762872..62766598+ functional_description:"Zinc finger HIT domain containing 2 (Predicted) (AHRD V1 ***- B5DEI7_RAT); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; NbS00008245g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|297740917|emb|CBI31099.3| (e_value=8e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-52) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=7e-50) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=8e-55) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00030752g0004.1 protein AED:0.21 eAED:0.21 QI:235|0.62|0.66|1|1|1|9|233|545; (*GB) gi|147857081|emb|CAN83907.1| (e_value=4e-145) hypothetical protein VITISV_035329 [Vitis vinifera];; (*SWP) sp|Q3KTM0|FRO7_ARATH (e_value=1e-124) Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1;; (*TAIR) AT5G49740.1 (e_value=7e-126) | Symbols: ATFRO7, FRO7 | ferric reduction oxidase 7 | chr5:20205549-20208628 REVERSE LENGTH=747;; (*ITAG) Solyc01g102610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00005982g0007.1 protein AED:0.05 eAED:0.05 QI:103|1|1|1|1|1|3|337|121; (*GB) gi|225451743|ref|XP_002280026.1| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100244709 isoform 1 [Vitis vinifera];; (*TAIR) AT3G02120.1 (e_value=6e-16) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:377122-377577 FORWARD LENGTH=126;; (*ITAG) Solyc02g088830.2.1 (e_value=4e-40) genomic_reference:SL2.40ch02 gene_region:45367997-45368704 transcript_region:SL2.40ch02:45367997..45368704+ functional_description:"F1C9.9 protein (AHRD V1 *-*- Q9SGB0_ARATH)"; NbS00005982g0008.1 protein AED:0.06 eAED:0.06 QI:227|1|1|1|0.87|0.77|9|337|463; (*GB) gi|224080111|ref|XP_002306020.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9Y0|SCP25_ARATH (e_value=0.0) Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2;; (*TAIR) AT3G02110.1 (e_value=0.0) | Symbols: scpl25 | serine carboxypeptidase-like 25 | chr3:370902-373637 REVERSE LENGTH=473;; (*ITAG) Solyc02g088820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45352857-45358218 transcript_region:SL2.40ch02:45352857..45358218- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00010740g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|382; (*GB) gi|84873488|gb|ABC67804.1| (e_value=2e-164) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=1e-160) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=7e-162) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=5e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00010740g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.77|1|1|1|9|0|421; (*GB) gi|224082810|ref|XP_002306848.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q499P8|CP058_RAT (e_value=1e-35) UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1;; (*TAIR) AT2G31190.2 (e_value=0.0) | Symbols: RUS2 | Protein of unknown function, DUF647 | chr2:13291458-13293681 REVERSE LENGTH=432;; (*ITAG) Solyc05g026140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:39844008-39849166 transcript_region:SL2.40ch05:39844008..39849166+ functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00010740g0013.1 protein AED:0.43 eAED:0.46 QI:62|0|0|1|0.2|0.33|6|0|202; (*GB) gi|225443833|ref|XP_002266892.1| (e_value=1e-44) PREDICTED: uncharacterized protein LOC100253185 [Vitis vinifera];; (*TAIR) AT1G29040.2 (e_value=5e-45) | Symbols: | unknown protein; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP02058 (InterPro:IPR011719); Has 190 Blast hits to 190 proteins in 92 species: Archae - 2; Bacteria - 141; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:10134120-10135180 FORWARD LENGTH=183;; (*ITAG) Solyc07g064690.1.1 (e_value=3e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63951661-63952050 transcript_region:SL2.40ch07:63951661..63952050+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011719 Conserved hypothetical protein CHP02058 "; NbS00010740g0009.1 protein AED:0.16 eAED:0.18 QI:93|0.66|0.9|1|0.88|0.8|10|751|160; (*GB) gi|225441985|ref|XP_002265563.1| (e_value=2e-80) PREDICTED: proteasome subunit alpha type-5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=1e-81) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT3G14290.1 (e_value=3e-81) | Symbols: PAE2 | 20S proteasome alpha subunit E2 | chr3:4764364-4766381 FORWARD LENGTH=237;; (*ITAG) Solyc02g070510.2.1 (e_value=5e-83) genomic_reference:SL2.40ch02 gene_region:34815271-34822336 transcript_region:SL2.40ch02:34815271..34822336+ go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6TGU2_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00008688g0007.1 protein AED:0.30 eAED:0.30 QI:295|1|1|1|1|1|2|279|149; (*GB) gi|359494864|ref|XP_003634857.1| (e_value=9e-56) PREDICTED: uncharacterized protein LOC100854976 [Vitis vinifera];; (*TAIR) AT1G11120.2 (e_value=8e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3715229-3717320 FORWARD LENGTH=161;; (*ITAG) Solyc02g078720.2.1 (e_value=1e-79) genomic_reference:SL2.40ch02 gene_region:37964451-37969357 transcript_region:SL2.40ch02:37964451..37969357+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008688g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|357446425|ref|XP_003593490.1| (e_value=2e-31) hypothetical protein MTR_2g012750 [Medicago truncatula];; (*TAIR) AT1G11125.1 (e_value=1e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). | chr1:3718846-3719643 FORWARD LENGTH=265;; (*ITAG) Solyc02g078760.1.1 (e_value=1e-105) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:37980682-37981443 transcript_region:SL2.40ch02:37980682..37981443- functional_description:"CK25 (AHRD V1 ***- Q1W1G0_TOBAC)"; NbS00008688g0002.1 protein AED:0.72 eAED:0.97 QI:0|0|0|0.75|1|1|4|0|135 NbS00041369g0003.1 protein AED:0.17 eAED:0.20 QI:0|0.5|0.33|0.66|1|1|3|0|246; (*GB) gi|359496302|ref|XP_003635203.1| (e_value=3e-30) PREDICTED: uncharacterized protein LOC100853295 [Vitis vinifera];; (*ITAG) Solyc08g078310.2.1 (e_value=4e-67) genomic_reference:SL2.40ch08 gene_region:59292037-59293515 transcript_region:SL2.40ch08:59292037..59293515+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00011956g0004.1 protein AED:0.28 eAED:0.28 QI:282|0.8|1|1|0.6|0.5|6|505|182; (*GB) gi|356496332|ref|XP_003517022.1| (e_value=1e-80) PREDICTED: vesicle-associated protein 1-2-like [Glycine max];; (*SWP) sp|Q9SHC8|VAP12_ARATH (e_value=3e-67) Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1;; (*TAIR) AT2G45140.1 (e_value=3e-68) | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611029-18612971 FORWARD LENGTH=239;; (*ITAG) Solyc01g090910.2.1 (e_value=6e-92) genomic_reference:SL2.40ch01 gene_region:76377586-76382694 transcript_region:SL2.40ch01:76377586..76382694+ go_terms:GO:0046982 functional_description:"Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0046982 NbS00036302g0007.1 protein AED:0.08 eAED:0.08 QI:92|0.75|0.8|1|0.5|0.8|5|220|222; (*GB) gi|357485613|ref|XP_003613094.1| (e_value=3e-75) Ovarian cancer-associated gene 2 protein-like protein [Medicago truncatula];; (*TAIR) AT4G24380.1 (e_value=9e-68) | Symbols: | INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12612554-12613586 FORWARD LENGTH=234;; (*ITAG) Solyc11g010420.1.1 (e_value=5e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3485517-3488338 transcript_region:SL2.40ch11:3485517..3488338+ go_terms:GO:0017171 functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; GO:0017171 NbS00016341g0001.1 protein AED:0.21 eAED:0.24 QI:48|0.75|0.84|1|1|1|13|0|555; (*GB) gi|255557861|ref|XP_002519960.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q94F87|CMT2_ARATH (e_value=9e-166) DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3;; (*TAIR) AT4G19020.1 (e_value=7e-167) | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-10420936 FORWARD LENGTH=1295;; (*ITAG) Solyc08g005400.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:292641-304684 transcript_region:SL2.40ch08:292641..304684+ go_terms:GO:0008017,GO:0045545 functional_description:"Cytosine-specific methyltransferase (AHRD V1 ***- B9S1U5_RICCO); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0008017,GO:0045545 NbS00016341g0014.1 protein AED:0.18 eAED:0.21 QI:0|0.73|0.75|1|0.57|0.65|20|0|599; (*GB) gi|255557651|ref|XP_002519855.1| (e_value=0.0) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT4G19040.1 (e_value=0.0) | Symbols: EDR2 | ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=718;; (*ITAG) Solyc08g005410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:304828-312257 transcript_region:SL2.40ch08:304828..312257- go_terms:GO:0008289 functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0008289 NbS00016341g0017.1 protein AED:0.32 eAED:0.35 QI:0|0|0|0.8|0.25|0.2|5|0|146; (*GB) gi|357453469|ref|XP_003597012.1| (e_value=2e-17) TdcA1-ORF2 protein [Medicago truncatula];; (*ITAG) Solyc07g015850.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00016341g0015.1 protein AED:0.46 eAED:0.84 QI:0|0|0|0.66|0|0.33|3|0|113 NbS00016341g0013.1 protein AED:0.20 eAED:0.26 QI:47|0|0|1|0|0|6|0|248; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-52) hypothetical protein [Nicotiana tabacum]; NbS00028520g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|927; (*GB) gi|255539443|ref|XP_002510786.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=5e-72) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT2G34930.1 (e_value=5e-102) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc02g068540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33072798-33074500 transcript_region:SL2.40ch02:33072798..33074500+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00028520g0008.1 protein AED:0.23 eAED:0.24 QI:0|0.86|0.87|0.93|0.8|0.87|16|256|500; (*GB) gi|225423637|ref|XP_002276048.1| (e_value=0.0) PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase [Vitis vinifera];; (*SWP) sp|O64765|UAP1_ARATH (e_value=0.0) Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Arabidopsis thaliana GN=At2g35020 PE=2 SV=1;; (*TAIR) AT1G31070.2 (e_value=0.0) | Symbols: GlcNAc1pUT1 | N-acetylglucosamine-1-phosphate uridylyltransferase 1 | chr1:11084951-11088361 FORWARD LENGTH=505;; (*ITAG) Solyc02g068530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33060678-33069001 transcript_region:SL2.40ch02:33060678..33069001+ go_terms:GO:0003977 functional_description:"UDP-N-acetylglucosamine pyrophosphorylase (AHRD V1 **** B6T8T3_MAIZE); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0003977 NbS00028520g0009.1 protein AED:0.03 eAED:0.03 QI:106|1|1|1|0.91|0.84|13|720|608; (*GB) gi|11878280|gb|AAG40879.1|AF321497_1 (e_value=0.0) phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Nicotiana tabacum];; (*SWP) sp|Q71YQ3|PUR9_LISMF (e_value=1e-166) Bifunctional purine biosynthesis protein PurH OS=Listeria monocytogenes serotype 4b (strain F2365) GN=purH PE=3 SV=1;; (*TAIR) AT2G35040.1 (e_value=0.0) | Symbols: | AICARFT/IMPCHase bienzyme family protein | chr2:14765347-14768269 REVERSE LENGTH=596;; (*ITAG) Solyc08g075160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56470989-56477178 transcript_region:SL2.40ch08:56470989..56477178+ go_terms:GO:0004643,GO:0003937 functional_description:"Bifunctional purine biosynthesis protein purH (AHRD V1 ***- D4Q5I3_LISMO); contains Interpro domain(s) IPR002695 AICARFT/IMPCHase bienzyme "; GO:0004643,GO:0003937 NbS00013956g0003.1 protein AED:0.29 eAED:0.31 QI:0|0.76|0.78|0.92|0.76|0.85|14|260|403; (*GB) gi|3560474|gb|AAC34951.1| (e_value=0.0) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q6ZIX2|SMT1_ORYSJ (e_value=5e-163) Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1;; (*TAIR) AT5G13710.2 (e_value=5e-161) | Symbols: SMT1, CPH | sterol methyltransferase 1 | chr5:4424048-4426866 REVERSE LENGTH=336;; (*ITAG) Solyc01g087560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74268028-74274007 transcript_region:SL2.40ch01:74268028..74274007+ go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** Q2QDF7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00050517g0008.1 protein AED:0.22 eAED:0.23 QI:315|0.75|0.6|1|1|1|5|0|255; (*GB) gi|225465314|ref|XP_002272474.1| (e_value=1e-143) PREDICTED: uncharacterized protein LOC100265982 [Vitis vinifera];; (*TAIR) AT5G49800.1 (e_value=9e-118) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr5:20234771-20236135 REVERSE LENGTH=242;; (*ITAG) Solyc01g102720.2.1 (e_value=7e-160) genomic_reference:SL2.40ch01 gene_region:83215138-83216790 transcript_region:SL2.40ch01:83215138..83216790- functional_description:"START domain containing 10 (Fragment) (AHRD V1 **-- Q52LA1_MOUSE); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00050517g0007.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|1|1|2|0|168; (*GB) gi|147765772|emb|CAN68983.1| (e_value=1e-100) hypothetical protein VITISV_004153 [Vitis vinifera];; (*SWP) sp|P51110|DFRA_VITVI (e_value=6e-19) Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1;; (*TAIR) AT2G02400.1 (e_value=6e-88) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:631413-632449 REVERSE LENGTH=318;; (*ITAG) Solyc01g102730.2.1 (e_value=8e-107) genomic_reference:SL2.40ch01 gene_region:83218112-83223218 transcript_region:SL2.40ch01:83218112..83223218- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl-CoA reductase family (AHRD V1 ***- D7LQ28_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00006670g0007.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|1|1|4|348|161; (*GB) gi|255559611|ref|XP_002520825.1| (e_value=2e-48) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G40435.1 (e_value=2e-39) | Symbols: | BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16887048-16888407 FORWARD LENGTH=158;; (*ITAG) Solyc06g050840.2.1 (e_value=2e-70) genomic_reference:SL2.40ch06 gene_region:30164049-30165645 transcript_region:SL2.40ch06:30164049..30165645+ go_terms:GO:0030528 functional_description:"DNA binding protein (AHRD V1 ***- B4FLH1_MAIZE)"; GO:0030528 NbS00006670g0008.1 protein AED:0.43 eAED:0.43 QI:0|1|0.33|1|0.5|0|3|0|129; (*GB) gi|359486357|ref|XP_002274126.2| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100243287 [Vitis vinifera];; (*TAIR) AT3G56210.4 (e_value=3e-61) | Symbols: | ARM repeat superfamily protein | chr3:20853995-20855445 REVERSE LENGTH=191;; (*ITAG) Solyc02g076790.2.1 (e_value=1e-73) genomic_reference:SL2.40ch02 gene_region:36481841-36485328 transcript_region:SL2.40ch02:36481841..36485328- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7LVD5_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00016559g0003.1 protein AED:0.04 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|359; (*GB) gi|255571935|ref|XP_002526909.1| (e_value=4e-107) OTU domain-containing protein 6B, putative [Ricinus communis];; (*SWP) sp|Q7ZV00|OTU6B_DANRE (e_value=5e-27) OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1;; (*TAIR) AT3G62940.3 (e_value=2e-93) | Symbols: | Cysteine proteinases superfamily protein | chr3:23263106-23264245 REVERSE LENGTH=332;; (*ITAG) Solyc04g053080.2.1 (e_value=1e-120) genomic_reference:SL2.40ch04 gene_region:50582502-50584310 transcript_region:SL2.40ch04:50582502..50584310- go_terms:GO:0008234 functional_description:"OTU domain-containing protein 6B (AHRD V1 ***- B6TYC6_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00016559g0006.1 protein AED:0.44 eAED:0.44 QI:0|0|0.5|0.5|1|1|2|31|61 NbS00016559g0014.1 protein AED:0.19 eAED:0.19 QI:167|1|1|1|0.91|0.84|13|334|493; (*GB) gi|224103993|ref|XP_002313274.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G26770.2 (e_value=0.0) | Symbols: | plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496;; (*ITAG) Solyc10g078340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59482438-59487279 transcript_region:SL2.40ch10:59482438..59487279- functional_description:"Os03g0364500 protein (Fragment) (AHRD V1 *-*- Q0DRQ2_ORYSJ)"; NbS00016559g0013.1 protein AED:0.21 eAED:0.21 QI:232|1|0.83|1|1|1|6|45|394; (*GB) gi|225435985|ref|XP_002272310.1| (e_value=0.0) PREDICTED: protein kinase 2B, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O49840|APK2B_ARATH (e_value=2e-150) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=1e-151) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc11g062400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46486889-46489897 transcript_region:SL2.40ch11:46486889..46489897+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016559g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|120; (*ITAG) Solyc08g076730.2.1 (e_value=7e-40) genomic_reference:SL2.40ch08 gene_region:57847867-57849297 transcript_region:SL2.40ch08:57847867..57849297- go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006021g0011.1 protein AED:0.15 eAED:0.15 QI:100|0.88|0.9|1|0.44|0.6|10|90|451; (*GB) gi|225436687|ref|XP_002263127.1| (e_value=0.0) PREDICTED: fatty acyl-CoA reductase 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=0.0) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=0.0) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc06g074390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42405732-42410059 transcript_region:SL2.40ch06:42405732..42410059+ go_terms:GO:0016627,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016627,GO:0080019 NbS00006021g0010.1 protein AED:0.20 eAED:0.20 QI:369|1|1|1|1|1|8|224|434; (*GB) gi|255565587|ref|XP_002523783.1| (e_value=0.0) Vacuolar protein sorting-associated protein VPS4, putative [Ricinus communis];; (*SWP) sp|Q0VD48|VPS4B_BOVIN (e_value=7e-162) Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1;; (*TAIR) AT2G27600.1 (e_value=0.0) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00000284g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.9|1|1|0.9|10|0|509; (*GB) gi|255557639|ref|XP_002519849.1| (e_value=2e-172) Transcription factor IWS1, putative [Ricinus communis];; (*SWP) sp|Q96ST2|IWS1_HUMAN (e_value=6e-28) Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2;; (*TAIR) AT1G32130.1 (e_value=8e-147) | Symbols: IWS1, ATIWS1 | Transcription elongation factor (TFIIS) family protein | chr1:11559146-11561786 REVERSE LENGTH=502;; (*ITAG) Solyc06g066320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37991616-37996445 transcript_region:SL2.40ch06:37991616..37996445- go_terms:GO:0005634 functional_description:"Transcription factor iws1 (AHRD V1 *-*- B6K1U8_SCHJY); contains Interpro domain(s) IPR008654 IWS1, C-terminal "; GO:0005634 NbS00000284g0002.1 protein AED:0.26 eAED:0.26 QI:248|0.75|0.69|1|0.91|0.84|13|198|560; (*GB) gi|225427072|ref|XP_002275808.1| (e_value=0.0) PREDICTED: phosphomevalonate kinase [Vitis vinifera];; (*SWP) sp|P24521|ERG8_YEAST (e_value=1e-23) Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG8 PE=1 SV=2;; (*TAIR) AT1G31910.1 (e_value=0.0) | Symbols: | GHMP kinase family protein | chr1:11459050-11461649 FORWARD LENGTH=505;; (*ITAG) Solyc06g066310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37981147-37988810 transcript_region:SL2.40ch06:37981147..37988810- go_terms:GO:0016310 functional_description:"Phosphomevalonate kinase (AHRD V1 ***- Q944G1_HEVBR); contains Interpro domain(s) IPR016005 Phosphomevalonate kinase, ERG8 "; GO:0016310 NbS00008110g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0|0.5|1|1|4|0|461; (*GB) gi|225427621|ref|XP_002269544.1| (e_value=7e-48) PREDICTED: uncharacterized protein LOC100244212 [Vitis vinifera];; (*SWP) sp|Q8ND56|LS14A_HUMAN (e_value=3e-24) Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3;; (*TAIR) AT1G26110.2 (e_value=6e-42) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc08g075300.2.1 (e_value=5e-57) genomic_reference:SL2.40ch08 gene_region:56554330-56563200 transcript_region:SL2.40ch08:56554330..56563200- functional_description:"Protein LSM14 homolog A-B (AHRD V1 *--- L14AB_XENLA); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00012899g0018.1 protein AED:0.50 eAED:0.53 QI:0|0|0|0.75|0.33|0|4|0|259; (*GB) gi|357435985|ref|XP_003588268.1| (e_value=1e-48) NADH-ubiquinone oxidoreductase chain [Medicago truncatula];; (*SWP) sp|P93313|NU4M_ARATH (e_value=2e-13) NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana GN=ND4 PE=2 SV=2;; (*ITAG) ATMG00580.1 (e_value=6e-14) | Symbols: NAD4 | NADH dehydrogenase subunit 4 | chrM:161693-169674 FORWARD LENGTH=495; NbS00012899g0017.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0.25|4|0|269; (*GB) gi|357435979|ref|XP_003588265.1| (e_value=4e-116) NADH-ubiquinone oxidoreductase chain [Medicago truncatula];; (*SWP) sp|Q04050|NU4M_BRACM (e_value=4e-77) NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris GN=ND4 PE=3 SV=1;; (*ITAG) ATMG00580.1 (e_value=2e-79) | Symbols: NAD4 | NADH dehydrogenase subunit 4 | chrM:161693-169674 FORWARD LENGTH=495;; (*ITAG) Solyc00g013180.1.1 (e_value=6e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10689876-10691222 transcript_region:SL2.40ch00:10689876..10691222- go_terms:GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase chain 4 (AHRD V1 ***- Q5M9Z8_TOBAC); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00012899g0023.1 protein AED:0.33 eAED:0.41 QI:0|0|0.33|1|0|0|3|0|169; (*ITAG) Solyc10g061880.1.1 (e_value=6e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:53294435-53294869 transcript_region:SL2.40ch10:53294435..53294869+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012899g0019.1 protein AED:0.29 eAED:0.44 QI:0|0|0|1|0|0|3|0|264; (*GB) gi|7432498|pir||S14115 (e_value=2e-81) NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion;; (*SWP) sp|P10330|NU5M_OENBE (e_value=7e-56) NADH-ubiquinone oxidoreductase chain 5 OS=Oenothera berteriana GN=ND5 PE=2 SV=2;; (*ITAG) ATMG00665.1 (e_value=4e-55) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669;; (*ITAG) Solyc00g013140.1.1 (e_value=1e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10682531-10684357 transcript_region:SL2.40ch00:10682531..10684357- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit 5 (Fragment) (AHRD V1 ***- A1XJP5_SIMCH); contains Interpro domain(s) IPR003945 NADH-plastoquinone oxidoreductase, chain 5 "; GO:0055114 NbS00012899g0025.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0|3|0|254; (*GB) gi|57013924|ref|YP_173397.1| (e_value=8e-92) hypothetical protein NitaMp051 [Nicotiana tabacum];; (*SWP) sp|P92812|RM02_ORYSJ (e_value=5e-20) 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2;; (*ITAG) ATMG00560.1 (e_value=7e-21) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc01g087480.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:74197002-74197268 transcript_region:SL2.40ch01:74197002..74197268+ functional_description:"Photosystem Q(B) protein (AHRD V1 ***- B6VJV1_VITVI)"; NbS00012899g0026.1 protein AED:0.42 eAED:0.84 QI:0|0|0|1|0|0|3|0|230; (*GB) gi|57013923|ref|YP_173396.1| (e_value=6e-23) ribosomal protein S10 [Nicotiana tabacum];; (*SWP) sp|P51428|RT10_PEA (e_value=1e-19) Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1;; (*TAIR) AT3G22300.1 (e_value=4e-14) | Symbols: RPS10 | ribosomal protein S10 | chr3:7885737-7886613 FORWARD LENGTH=241;; (*ITAG) Solyc11g063600.1.1 (e_value=5e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46722769-46723963 transcript_region:SL2.40ch11:46722769..46723963+ go_terms:GO:0005840,GO:0015935 functional_description:"30S Ribosomal protein S10 (AHRD V1 ***- Q055E5_LEPBL); contains Interpro domain(s) IPR005731 Ribosomal protein S10, bacterial "; GO:0005840,GO:0015935 NbS00012899g0020.1 protein AED:0.39 eAED:0.67 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|57013948|ref|YP_173421.1| (e_value=1e-33) hypothetical protein NitaMp079 [Nicotiana tabacum]; NbS00012899g0022.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0|0|2|0|128; (*ITAG) Solyc06g051370.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:31175855-31176298 transcript_region:SL2.40ch06:31175855..31176298+ go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9W3_9MAGN); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00018626g0008.1 protein AED:0.00 eAED:0.00 QI:337|1|1|1|1|1|2|31|223; (*GB) gi|224087114|ref|XP_002308070.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVZ8|LOR12_ARATH (e_value=4e-66) Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1;; (*TAIR) AT3G15810.1 (e_value=3e-67) | Symbols: | Protein of unknown function (DUF567) | chr3:5348054-5349178 REVERSE LENGTH=220;; (*ITAG) Solyc03g116710.2.1 (e_value=2e-68) genomic_reference:SL2.40ch03 gene_region:60053388-60054523 transcript_region:SL2.40ch03:60053388..60054523- functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00018626g0007.1 protein AED:0.08 eAED:0.04 QI:0|1|0.2|1|0.75|0.8|5|0|617; (*GB) gi|225445547|ref|XP_002282238.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 11-like [Vitis vinifera];; (*TAIR) AT3G33530.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr3:14085354-14093449 FORWARD LENGTH=1345;; (*ITAG) Solyc07g008090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2802571-2803765 transcript_region:SL2.40ch07:2802571..2803765- functional_description:"WD repeat-containing protein 11 (AHRD V1 **-- WDR11_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00018626g0009.1 protein AED:0.30 eAED:0.65 QI:0|0|0|0.66|0.5|0.66|3|0|103; (*GB) gi|224144173|ref|XP_002325208.1| (e_value=4e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT3G33530.2 (e_value=7e-18) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr3:14085354-14093449 FORWARD LENGTH=1358;; (*ITAG) Solyc07g008080.2.1 (e_value=4e-27) genomic_reference:SL2.40ch07 gene_region:2782240-2800373 transcript_region:SL2.40ch07:2782240..2800373- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 11 (AHRD V1 **-- WDR11_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00020614g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|302143962|emb|CBI23067.3| (e_value=1e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46690.1 (e_value=1e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr2:19180904-19181269 FORWARD LENGTH=121;; (*ITAG) Solyc03g082530.1.1 (e_value=2e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:46007641-46008009 transcript_region:SL2.40ch03:46007641..46008009- functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7M515_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00020614g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|156; (*GB) gi|302143962|emb|CBI23067.3| (e_value=8e-35) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G00880.1 (e_value=3e-30) | Symbols: | SAUR-like auxin-responsive protein family | chr4:366692-367060 REVERSE LENGTH=122;; (*ITAG) Solyc03g082520.1.1 (e_value=1e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:46002981-46003334 transcript_region:SL2.40ch03:46002981..46003334- go_terms:GO:0005516 functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00015122g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|48057668|gb|AAT39967.1| (e_value=3e-73) Putative ZF-HD homeobox protein, identical [Solanum demissum];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=4e-50) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT1G69600.1 (e_value=3e-51) | Symbols: ZFHD1, ATHB29, ZHD11 | zinc finger homeodomain 1 | chr1:26182470-26183198 FORWARD LENGTH=242;; (*ITAG) Solyc05g007580.1.1 (e_value=3e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2120151-2121044 transcript_region:SL2.40ch05:2120151..2121044- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00012240g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.63|0.5|1|0.81|0.83|12|0|933; (*GB) gi|350539483|ref|NP_001234657.1| (e_value=0.0) cutin deficient 2 [Solanum lycopersicum];; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=0.0) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1;; (*TAIR) AT4G00730.1 (e_value=0.0) | Symbols: ANL2, AHDP | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:299741-304103 REVERSE LENGTH=802;; (*ITAG) Solyc01g091630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76982217-76987692 transcript_region:SL2.40ch01:76982217..76987692- go_terms:GO:0030528 functional_description:"Homeobox-leucine zipper protein ATHB-9 (AHRD V1 *-*- ATBH9_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0030528 NbS00012240g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.75|1|1|1|8|258|629; (*GB) gi|225453730|ref|XP_002272714.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT13 [Vitis vinifera];; (*SWP) sp|Q93W95|PMTD_ARATH (e_value=0.0) Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1;; (*TAIR) AT4G00740.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:307815-310298 REVERSE LENGTH=600;; (*ITAG) Solyc01g091640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76996514-77003708 transcript_region:SL2.40ch01:76996514..77003708- functional_description:"Dehydration responsive protein (AHRD V1 ***- C0JJG7_SOYBN); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00000473g0007.1 protein AED:0.17 eAED:0.17 QI:0|1|0.9|1|1|0.9|10|284|292; (*GB) gi|225433688|ref|XP_002266909.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera];; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=2e-171) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2;; (*TAIR) AT1G10840.1 (e_value=1e-172) | Symbols: TIF3H1 | translation initiation factor 3 subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337;; (*ITAG) Solyc12g098680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64446795-64452106 transcript_region:SL2.40ch12:64446795..64452106+ functional_description:"Eukaryotic translation initiation factor 3 subunit 3 (AHRD V1 ***- B6SHE0_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00000473g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|6|0|327; (*GB) gi|225433684|ref|XP_002266620.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=3e-26) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT5G56190.1 (e_value=6e-172) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441;; (*ITAG) Solyc12g098690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64455004-64459831 transcript_region:SL2.40ch12:64455004..64459831+ functional_description:"WD-repeat protein-like (AHRD V1 **-- Q8LG28_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00000473g0010.1 protein AED:0.24 eAED:0.50 QI:280|0|0.25|0.5|0.66|0.5|4|0|126; (*GB) gi|225433684|ref|XP_002266620.1| (e_value=2e-49) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*TAIR) AT5G56190.1 (e_value=1e-34) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441;; (*ITAG) Solyc12g098690.1.1 (e_value=5e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64455004-64459831 transcript_region:SL2.40ch12:64455004..64459831+ functional_description:"WD-repeat protein-like (AHRD V1 **-- Q8LG28_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00003359g0005.1 protein AED:0.04 eAED:0.04 QI:52|1|0.5|1|0|1|2|147|88 NbS00003359g0006.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.6|0.66|6|406|275; (*GB) gi|255547516|ref|XP_002514815.1| (e_value=2e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G43945.1 (e_value=3e-123) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr2:18197995-18199988 REVERSE LENGTH=289;; (*ITAG) Solyc08g015620.2.1 (e_value=6e-165) genomic_reference:SL2.40ch08 gene_region:4765220-4773446 transcript_region:SL2.40ch08:4765220..4773446- functional_description:"Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (AHRD V1 **-- B6U7J5_MAIZE)"; NbS00003359g0102.1 protein AED:0.16 eAED:0.16 QI:112|1|1|1|0.41|0.61|13|248|482 NbS00003359g0201.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|467 NbS00003359g0202.1 protein AED:0.19 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|212 NbS00003359g0207.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|182 NbS00003359g0413.1 protein AED:0.16 eAED:0.16 QI:0|0.87|0.66|1|0.75|0.88|9|0|469 NbS00003359g0409.1 protein AED:0.29 eAED:0.29 QI:243|1|1|1|1|1|7|298|199 NbS00003359g0404.1 protein AED:0.60 eAED:0.60 QI:164|0|0.25|0.25|1|1|4|0|78 NbS00008139g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|2246454|gb|AAB62808.1| (e_value=0.0) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q39227|SMT2_ARATH (e_value=0.0) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=0.0) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc01g111830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00008139g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|0.66|1|1|3|0|233; (*GB) gi|225428243|ref|XP_002279423.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100258993 [Vitis vinifera];; (*TAIR) AT2G41990.1 (e_value=1e-41) | Symbols: | CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17527396-17528527 FORWARD LENGTH=297;; (*ITAG) Solyc11g042880.1.1 (e_value=1e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34353128-34353894 transcript_region:SL2.40ch11:34353128..34353894- functional_description:"Harpin-induced protein (AHRD V1 **-- B6TDG9_MAIZE)"; NbS00008139g0013.1 protein AED:0.15 eAED:0.16 QI:0|0.92|0.85|1|0.76|0.85|14|61|405; (*GB) gi|225428113|ref|XP_002280708.1| (e_value=2e-164) PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera];; (*SWP) sp|Q8CIA9|HIAL1_MOUSE (e_value=3e-17) Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=2;; (*TAIR) AT2G16980.2 (e_value=1e-112) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461;; (*ITAG) Solyc07g026930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:32618637-32623272 transcript_region:SL2.40ch07:32618637..32623272+ go_terms:GO:0008493 functional_description:"Tetracycline transporter (AHRD V1 **-* D7L897_ARALY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00035209g0006.1 protein AED:0.18 eAED:0.18 QI:246|0.9|0.90|1|0.8|0.63|11|276|682; (*GB) gi|225444363|ref|XP_002266688.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=0.0) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=0.0) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc10g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:239692-245015 transcript_region:SL2.40ch10:239692..245015- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00036280g0004.1 protein AED:0.05 eAED:0.05 QI:5|0.66|1|1|0.33|0.5|4|67|291; (*GB) gi|147777218|emb|CAN63286.1| (e_value=2e-44) hypothetical protein VITISV_025194 [Vitis vinifera];; (*TAIR) AT1G14600.1 (e_value=3e-13) | Symbols: | Homeodomain-like superfamily protein | chr1:5001185-5003370 REVERSE LENGTH=255;; (*ITAG) Solyc04g008480.1.1 (e_value=6e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2095913-2099972 transcript_region:SL2.40ch04:2095913..2099972- go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q10S98_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00036280g0005.1 protein AED:0.05 eAED:0.05 QI:54|1|1|1|0|0|2|164|77; (*GB) gi|225425955|ref|XP_002274353.1| (e_value=3e-35) PREDICTED: defensin-like protein [Vitis vinifera];; (*SWP) sp|O65740|DEF2_CAPAN (e_value=2e-33) Defensin J1-2 OS=Capsicum annuum PE=1 SV=1;; (*TAIR) AT2G02100.1 (e_value=4e-28) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc04g008470.2.1 (e_value=7e-36) genomic_reference:SL2.40ch04 gene_region:2087094-2089108 transcript_region:SL2.40ch04:2087094..2089108+ go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N682_SOLPI); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00039489g0003.1 protein AED:0.15 eAED:0.15 QI:120|1|1|1|1|1|10|449|437; (*GB) gi|224063858|ref|XP_002301292.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y4P3|TBL2_HUMAN (e_value=2e-38) Transducin beta-like protein 2 OS=Homo sapiens GN=TBL2 PE=1 SV=1;; (*TAIR) AT4G00090.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:34234-36594 FORWARD LENGTH=430;; (*ITAG) Solyc01g091310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76711331-76720741 transcript_region:SL2.40ch01:76711331..76720741+ go_terms:GO:0005515,GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IZJ6_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00013337g0003.1 protein AED:0.03 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|712; (*GB) gi|225451363|ref|XP_002263205.1| (e_value=0.0) PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera];; (*SWP) sp|Q7X6Y7|MMD1_ARATH (e_value=0.0) PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1;; (*TAIR) AT1G66170.1 (e_value=0.0) | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily protein | chr1:24638793-24641222 REVERSE LENGTH=704;; (*ITAG) Solyc11g011560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4628796-4631184 transcript_region:SL2.40ch11:4628796..4631184+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00022072g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=6e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g071270.1.1 (e_value=1e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55799722-55800912 transcript_region:SL2.40ch04:55799722..55800912- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00022072g0009.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.57|0.85|1|1|7|0|361; (*GB) gi|225450096|ref|XP_002278255.1| (e_value=0.0) PREDICTED: actin-related protein 7 [Vitis vinifera];; (*SWP) sp|Q8L4Y5|ARP7_ARATH (e_value=0.0) Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1;; (*TAIR) AT3G60830.1 (e_value=0.0) | Symbols: ATARP7, ARP7 | actin-related protein 7 | chr3:22474298-22476000 FORWARD LENGTH=363;; (*ITAG) Solyc11g008500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2674667-2681148 transcript_region:SL2.40ch11:2674667..2681148+ go_terms:GO:0005515 functional_description:"Actin (AHRD V1 ***- Q6WE50_9EUKA); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbS00022072g0003.1 protein AED:0.15 eAED:0.19 QI:0|0.8|0.83|1|0.4|0.33|6|1449|192; (*GB) gi|225427983|ref|XP_002277675.1| (e_value=8e-62) PREDICTED: probable endo-1,4-beta-xylanase C-like [Vitis vinifera];; (*TAIR) AT4G38650.1 (e_value=1e-55) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:18063377-18065769 FORWARD LENGTH=562;; (*ITAG) Solyc11g040330.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30540584-30549013 transcript_region:SL2.40ch11:30540584..30549013+ go_terms:GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00022072g0005.1 protein AED:0.67 eAED:0.73 QI:0|0|0|0.6|1|1|5|0|137; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=4e-36) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=1e-37) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=3e-34) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc11g008510.1.1 (e_value=4e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2684326-2686166 transcript_region:SL2.40ch11:2684326..2686166+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0005840 NbS00022072g0011.1 protein AED:0.24 eAED:0.27 QI:0|0|0|0.5|0|0|2|0|160; (*GB) gi|78102606|ref|YP_358745.1| (e_value=6e-52) hypothetical protein NisyCp102 [Nicotiana sylvestris];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-53) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc02g011820.1.1 (e_value=9e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4988509-4989027 transcript_region:SL2.40ch02:4988509..4989027- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- B1NWK7_MANES)"; NbS00002941g0001.1 protein AED:0.02 eAED:0.41 QI:388|0.5|0.66|1|0|0.33|3|0|96; (*GB) gi|147817785|emb|CAN75585.1| (e_value=1e-40) hypothetical protein VITISV_017140 [Vitis vinifera];; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=4e-28) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G60750.1 (e_value=6e-29) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741;; (*ITAG) Solyc01g018020.1.1 (e_value=5e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:26846738-26852758 transcript_region:SL2.40ch01:26846738..26852758+ go_terms:GO:0004802,GO:0008152 functional_description:"Transketolase-like protein (AHRD V1 ***- Q8LE99_ARATH); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0008152 NbS00011597g0002.1 protein AED:0.01 eAED:0.01 QI:119|1|1|1|1|1|3|208|323; (*GB) gi|225454298|ref|XP_002276925.1| (e_value=3e-66) PREDICTED: WRKY transcription factor 22 [Vitis vinifera];; (*SWP) sp|O04609|WRK22_ARATH (e_value=5e-62) WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1;; (*TAIR) AT4G01250.1 (e_value=4e-63) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc10g011910.2.1 (e_value=3e-88) genomic_reference:SL2.40ch10 gene_region:4187405-4189346 transcript_region:SL2.40ch10:4187405..4189346- go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00002768g0002.1 protein AED:0.33 eAED:0.46 QI:860|0.5|0.8|1|0|0.6|5|144|90; (*ITAG) Solyc10g005920.2.1 (e_value=9e-27) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00026582g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|438; (*GB) gi|297829600|ref|XP_002882682.1| (e_value=3e-156) CYP77A7 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P37123|C77A1_SOLME (e_value=2e-113) Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1;; (*TAIR) AT3G10570.1 (e_value=1e-88) | Symbols: CYP77A6 | cytochrome P450, family 77, subfamily A, polypeptide 6 | chr3:3302156-3303697 FORWARD LENGTH=513;; (*ITAG) Solyc11g007540.1.1 (e_value=1e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1793527-1795146 transcript_region:SL2.40ch11:1793527..1795146- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026582g0009.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|253; (*GB) gi|584866|sp|P37123.1|C77A1_SOLME (e_value=1e-125) RecName: Full=Cytochrome P450 77A1; AltName: Full=CYPLXXVIIA1; AltName: Full=Cytochrome P-450EG6;; (*SWP) sp|P37123|C77A1_SOLME (e_value=4e-127) Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1;; (*TAIR) AT5G04660.1 (e_value=7e-105) | Symbols: CYP77A4 | cytochrome P450, family 77, subfamily A, polypeptide 4 | chr5:1336049-1337587 FORWARD LENGTH=512;; (*ITAG) Solyc11g007540.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1793527-1795146 transcript_region:SL2.40ch11:1793527..1795146- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026582g0008.1 protein AED:0.43 eAED:1.00 QI:34|0|0|1|0|0|2|98|26 NbS00012994g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|889; (*GB) gi|54778537|gb|AAV39529.1| (e_value=0.0) tm-2 [Lycopersicon peruvianum var. dentatum];; (*SWP) sp|Q9FJB5|RP8L3_ARATH (e_value=7e-93) Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1;; (*TAIR) AT5G35450.1 (e_value=5e-94) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc09g018220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:13621396-13623981 transcript_region:SL2.40ch09:13621396..13623981- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00012994g0103.1 protein AED:0.11 eAED:0.11 QI:196|1|1|1|0.69|0.78|14|1233|303 NbS00012994g0210.1 protein AED:0.01 eAED:0.01 QI:74|1|0.75|1|1|1|4|0|281 NbS00044102g0005.1 protein AED:0.04 eAED:0.04 QI:509|1|0.5|1|0|0.5|2|747|71 NbS00012843g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|130271|sp|P17340.1|PLAS_SOLLC (e_value=5e-79) RecName: Full=Plastocyanin, chloroplastic; Flags: Precursor;; (*SWP) sp|P17340|PLAS_SOLLC (e_value=1e-80) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G76100.1 (e_value=5e-69) | Symbols: PETE1 | plastocyanin 1 | chr1:28554217-28554732 REVERSE LENGTH=171;; (*ITAG) Solyc04g082010.1.1 (e_value=9e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- go_terms:GO:0009055 functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "; GO:0009055 NbS00012843g0002.1 protein AED:0.11 eAED:0.11 QI:112|1|1|1|0.87|0.77|9|1619|514; (*GB) gi|374250711|gb|AEY99978.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=0.0) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.2 (e_value=0.0) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28537743-28540448 FORWARD LENGTH=561;; (*ITAG) Solyc04g081910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63365446-63370378 transcript_region:SL2.40ch04:63365446..63370378+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00059737g0005.1 protein AED:0.24 eAED:0.30 QI:1|0.81|0.66|1|0.54|0.66|12|0|726; (*GB) gi|225436522|ref|XP_002273792.1| (e_value=0.0) PREDICTED: ABC transporter G family member 3 [Vitis vinifera];; (*SWP) sp|Q9ZUU9|AB3G_ARATH (e_value=0.0) ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2;; (*TAIR) AT2G28070.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730;; (*ITAG) Solyc11g069710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51394342-51402692 transcript_region:SL2.40ch11:51394342..51402692- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 3 (AHRD V1 ***- AB3G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00034075g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|519; (*GB) gi|30315245|gb|AAP30841.1| (e_value=0.0) nectarin 5 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=6e-125) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT5G44440.1 (e_value=4e-178) | Symbols: | FAD-binding Berberine family protein | chr5:17910694-17912295 REVERSE LENGTH=533;; (*ITAG) Solyc06g065060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36964190-36965806 transcript_region:SL2.40ch06:36964190..36965806- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFI0_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00001099g0009.1 protein AED:0.20 eAED:0.20 QI:62|0.6|0.54|1|0.7|0.63|11|841|358; (*GB) gi|225430261|ref|XP_002285072.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis vinifera];; (*SWP) sp|Q9LFN6|RH56_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2;; (*TAIR) AT5G11170.2 (e_value=0.0) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3554272-3556646 FORWARD LENGTH=344;; (*ITAG) Solyc08g061000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43548025-43554331 transcript_region:SL2.40ch08:43548025..43554331- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q1HR75_AEDAE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00001099g0006.1 protein AED:0.01 eAED:0.01 QI:10|1|1|1|0|0|3|318|135; (*GB) gi|225443011|ref|XP_002269641.1| (e_value=2e-66) PREDICTED: EG45-like domain containing protein [Vitis vinifera];; (*SWP) sp|Q9ZP41|EGC_CITJA (e_value=2e-23) EG45-like domain containing protein OS=Citrus jambhiri GN=CjBAp12 PE=1 SV=1;; (*TAIR) AT2G18660.1 (e_value=2e-23) | Symbols: PNP-A | plant natriuretic peptide A | chr2:8091032-8091644 REVERSE LENGTH=130;; (*ITAG) Solyc08g061060.1.1 (e_value=8e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:43685752-43687014 transcript_region:SL2.40ch08:43685752..43687014- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN22_CITUN); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00048804g0008.1 protein AED:0.28 eAED:0.28 QI:373|0.66|0.57|0.85|0.83|0.85|7|0|396; (*GB) gi|359474965|ref|XP_003631561.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like isoform 2 [Vitis vinifera];; (*SWP) sp|P27450|CX32_ARATH (e_value=3e-146) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=413;; (*ITAG) Solyc01g112220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90032288-90034776 transcript_region:SL2.40ch01:90032288..90034776- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q5XWQ1_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00000023g0001.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|359483726|ref|XP_002266522.2| (e_value=2e-63) PREDICTED: dof zinc finger protein DOF1.5-like [Vitis vinifera];; (*SWP) sp|O22967|DOF23_ARATH (e_value=8e-51) Dof zinc finger protein DOF2.3 OS=Arabidopsis thaliana GN=DOF2.3 PE=2 SV=1;; (*TAIR) AT2G34140.1 (e_value=6e-52) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr2:14414188-14414700 REVERSE LENGTH=170;; (*ITAG) Solyc02g076850.1.1 (e_value=1e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36554226-36554717 transcript_region:SL2.40ch02:36554226..36554717+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00000023g0008.1 protein AED:0.16 eAED:0.23 QI:348|0.44|0.4|1|0.44|0.4|10|0|1372; (*GB) gi|225443802|ref|XP_002266486.1| (e_value=2e-65) PREDICTED: protein SCAR3-like [Vitis vinifera];; (*SWP) sp|Q9LP46|SCAR3_ARATH (e_value=2e-57) Protein SCAR3 OS=Arabidopsis thaliana GN=SCAR3 PE=1 SV=1;; (*TAIR) AT1G29170.2 (e_value=1e-58) | Symbols: WAVE2 | SCAR family protein | chr1:10190720-10194900 REVERSE LENGTH=973;; (*ITAG) Solyc02g076840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36537398-36546762 transcript_region:SL2.40ch02:36537398..36546762+ functional_description:"Wiskott-Aldrich syndrome protein family member 2 (AHRD V1 *--- WASF2_MOUSE)"; NbS00041705g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|389; (*GB) gi|255582026|ref|XP_002531810.1| (e_value=1e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G08600.1 (e_value=3e-41) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc06g060510.1.1 (e_value=9e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34931349-34932347 transcript_region:SL2.40ch06:34931349..34932347- functional_description:"Transcription elongation factor SPT5 (AHRD V1 *--- SPT5H_DANRE); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00002335g0003.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|375; (*GB) gi|225434879|ref|XP_002283212.1| (e_value=2e-107) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=5e-41) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT3G46620.1 (e_value=1e-79) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17178837-17180024 REVERSE LENGTH=395;; (*ITAG) Solyc04g011610.1.1 (e_value=6e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00013102g0008.1 protein AED:0.23 eAED:0.23 QI:94|0.85|0.62|1|1|1|8|133|500; (*GB) gi|255543821|ref|XP_002512973.1| (e_value=0.0) xylulose kinase, putative [Ricinus communis];; (*TAIR) AT2G21370.1 (e_value=0.0) | Symbols: XK-1, XK1 | xylulose kinase-1 | chr2:9137582-9140050 REVERSE LENGTH=478;; (*ITAG) Solyc11g042940.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34441359-34443470 transcript_region:SL2.40ch11:34441359..34443470+ go_terms:GO:0005975 functional_description:"Carbohydrate kinase FGGY (AHRD V1 ***- B7KH14_CYAP7); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0005975 NbS00013102g0118.1 protein AED:0.14 eAED:0.14 QI:456|1|1|1|0.73|0.74|27|312|1064 NbS00013102g0116.1 protein AED:0.00 eAED:0.00 QI:166|1|1|1|1|1|2|189|77 NbS00013102g0117.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.63|1|1|1|11|0|548 NbS00061958g0003.1 protein AED:0.35 eAED:0.35 QI:0|1|0.85|1|1|1|7|0|360; (*GB) gi|350537875|ref|NP_001233803.1| (e_value=0.0) pto-interacting protein 1 [Solanum lycopersicum];; (*SWP) sp|Q41328|PTI1_SOLLC (e_value=0.0) Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2;; (*TAIR) AT3G17410.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:5956601-5958882 FORWARD LENGTH=364;; (*ITAG) Solyc05g053230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62504704-62508914 transcript_region:SL2.40ch05:62504704..62508914- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** C6ZRR6_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbC26114925g0005.1 protein AED:0.22 eAED:0.33 QI:0|0.75|0.4|1|1|0.8|5|0|179; (*GB) gi|15238536|ref|NP_200788.1| (e_value=3e-17) methyl-CPG-binding domain 7 protein [Arabidopsis thaliana];; (*SWP) sp|Q9FJF4|MBD7_ARATH (e_value=9e-19) Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 PE=1 SV=1;; (*TAIR) AT5G59800.1 (e_value=7e-20) | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain 7 | chr5:24094752-24096422 REVERSE LENGTH=306;; (*ITAG) Solyc11g073080.1.1 (e_value=1e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53269357-53272788 transcript_region:SL2.40ch11:53269357..53272788+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9HPK6_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbC26114925g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|225435066|ref|XP_002281425.1| (e_value=6e-114) PREDICTED: putative nuclease HARBI1 [Vitis vinifera];; (*TAIR) AT3G55350.1 (e_value=4e-86) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406;; (*ITAG) Solyc11g073090.1.1 (e_value=4e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53273840-53274829 transcript_region:SL2.40ch11:53273840..53274829- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00049700g0007.1 protein AED:0.10 eAED:0.10 QI:467|0.66|0.7|1|0.88|0.9|10|365|496; (*GB) gi|356569663|ref|XP_003553017.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 4-like [Glycine max];; (*SWP) sp|Q8H191|PAO4_ARATH (e_value=0.0) Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1;; (*TAIR) AT1G65840.1 (e_value=0.0) | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1:24490173-24492728 FORWARD LENGTH=497;; (*ITAG) Solyc02g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39952097-39957169 transcript_region:SL2.40ch02:39952097..39957169- go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00009838g0012.1 protein AED:0.17 eAED:0.20 QI:84|0.90|0.91|1|0.90|1|12|528|488; (*GB) gi|359486271|ref|XP_002268159.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262534 [Vitis vinifera];; (*TAIR) AT2G23390.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). | chr2:9960568-9963476 REVERSE LENGTH=469;; (*ITAG) Solyc01g103110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83534654-83541901 transcript_region:SL2.40ch01:83534654..83541901+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007434 Protein of unknown function DUF482 "; NbS00009838g0010.1 protein AED:0.09 eAED:0.09 QI:428|0.83|0.76|1|0.79|0.8|25|211|900; (*GB) gi|224120026|ref|XP_002331118.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE83|DRP2A_ARATH (e_value=0.0) Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2;; (*TAIR) AT1G10290.1 (e_value=0.0) | Symbols: ADL6, DRP2A | dynamin-like protein 6 | chr1:3370774-3377120 FORWARD LENGTH=914;; (*ITAG) Solyc11g039650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:25081015-25107234 transcript_region:SL2.40ch11:25081015..25107234+ go_terms:GO:0005525 functional_description:"Dynamin-2A (AHRD V1 ***- B6UEQ3_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00009838g0011.1 protein AED:0.13 eAED:0.14 QI:296|0.6|0.83|1|0.8|0.83|6|659|730; (*GB) gi|1360090|emb|CAA64829.1| (e_value=0.0) C1C-Nt1 [Nicotiana tabacum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=0.0) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=0.0) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc01g103140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83556380-83563321 transcript_region:SL2.40ch01:83556380..83563321- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00010787g0005.1 protein AED:0.23 eAED:0.23 QI:414|0.88|1|1|0.66|0.6|10|328|570; (*GB) gi|147866739|emb|CAN81171.1| (e_value=0.0) hypothetical protein VITISV_014022 [Vitis vinifera];; (*TAIR) AT5G47380.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF547 | chr5:19221472-19224471 REVERSE LENGTH=618;; (*ITAG) Solyc08g078520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59461187-59468560 transcript_region:SL2.40ch08:59461187..59468560+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *--- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00010787g0108.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|250 NbS00010787g0109.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.71|1|0.33|0.57|7|0|428 NbS00010787g0113.1 protein AED:0.24 eAED:0.24 QI:0|0.83|1|1|0.66|0.71|7|476|342 NbS00036517g0003.1 protein AED:0.13 eAED:0.18 QI:0|0.85|0.75|1|0.71|0.87|8|248|1434; (*GB) gi|147856644|emb|CAN82462.1| (e_value=0.0) hypothetical protein VITISV_009583 [Vitis vinifera];; (*SWP) sp|Q55A09|Y9963_DICDI (e_value=1e-36) Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1;; (*TAIR) AT3G46920.1 (e_value=2e-169) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:17280430-17284857 REVERSE LENGTH=1171;; (*ITAG) Solyc07g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1889884-1899241 transcript_region:SL2.40ch07:1889884..1899241- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00049804g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|89; (*GB) gi|4850412|gb|AAD31079.1| (e_value=6e-16) Mutator-like transposase [Arabidopsis thaliana];; (*ITAG) Solyc03g093100.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00025629g0004.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|290; (*GB) gi|225440870|ref|XP_002276587.1| (e_value=4e-49) PREDICTED: uncharacterized protein LOC100244210 [Vitis vinifera];; (*TAIR) AT3G52710.1 (e_value=3e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19534638-19535507 FORWARD LENGTH=289;; (*ITAG) Solyc10g083330.1.1 (e_value=3e-140) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:62486719-62487636 transcript_region:SL2.40ch10:62486719..62487636+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 *-*- Q84ZT8_TOBAC)"; NbS00025629g0011.1 protein AED:0.02 eAED:0.02 QI:221|0.71|0.75|1|0.42|0.5|8|807|333; (*GB) gi|359482492|ref|XP_002274180.2| (e_value=4e-133) PREDICTED: uncharacterized protein LOC100241207 [Vitis vinifera];; (*TAIR) AT3G11470.1 (e_value=6e-105) | Symbols: | 4'-phosphopantetheinyl transferase superfamily | chr3:3610261-3612094 REVERSE LENGTH=300;; (*ITAG) Solyc09g009960.2.1 (e_value=2e-151) genomic_reference:SL2.40ch09 gene_region:3412363-3416452 transcript_region:SL2.40ch09:3412363..3416452- go_terms:GO:0009059 functional_description:"4&apos-phosphopantetheinyl transferase family protein (AHRD V1 ***- D7LAN4_ARALY); contains Interpro domain(s) IPR008278 4'-phosphopantetheinyl transferase "; GO:0009059 NbS00025629g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|225440847|ref|XP_002282286.1| (e_value=2e-45) PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera];; (*TAIR) AT2G36210.1 (e_value=6e-39) | Symbols: | SAUR-like auxin-responsive protein family | chr2:15186326-15186733 REVERSE LENGTH=135;; (*ITAG) Solyc10g083320.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62479523-62479909 transcript_region:SL2.40ch10:62479523..62479909- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00025629g0012.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|108773172|ref|YP_635682.1| (e_value=1e-40) Ycf2 [Solanum tuberosum];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=4e-42) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-39) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00011572g0004.1 protein AED:0.30 eAED:0.30 QI:251|1|0.94|1|0.93|0.88|17|21|565; (*GB) gi|380853844|gb|AFE88229.1| (e_value=0.0) acetyl-CoA carboxylase [Nicotiana tabacum];; (*SWP) sp|B9HBA8|ACCC1_POPTR (e_value=0.0) Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1;; (*TAIR) AT5G35360.1 (e_value=0.0) | Symbols: CAC2 | acetyl Co-enzyme a carboxylase biotin carboxylase subunit | chr5:13584300-13588268 FORWARD LENGTH=537;; (*ITAG) Solyc01g008330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2451880-2461756 transcript_region:SL2.40ch01:2451880..2461756+ go_terms:GO:0008152,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase biotin carboxylase (AHRD V1 ***- B4VQU4_9CYAN); contains Interpro domain(s) IPR004549 Acetyl-CoA carboxylase, biotin carboxylase "; GO:0008152,GO:0005524,GO:0016874 NbS00011572g0005.1 protein AED:0.35 eAED:0.41 QI:0|0|0|1|0|0|2|0|78; (*SWP) sp|Q3V4Z0|YCF2_ACOCL (e_value=1e-14) Protein ycf2 OS=Acorus calamus GN=ycf2-A PE=3 SV=1;; (*ITAG) Solyc01g007640.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00030583g0006.1 protein AED:0.17 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|244|557; (*GB) gi|225459754|ref|XP_002284756.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LN22|PPR54_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1;; (*TAIR) AT1G20300.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7029701-7031314 FORWARD LENGTH=537;; (*ITAG) Solyc04g081950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63382267-63384296 transcript_region:SL2.40ch04:63382267..63384296+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIB0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003548g0009.1 protein AED:0.22 eAED:0.34 QI:0|0|0|1|1|1|3|0|241; (*GB) gi|255572166|ref|XP_002527023.1| (e_value=7e-93) Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis];; (*TAIR) AT5G38200.1 (e_value=3e-78) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc05g008910.2.1 (e_value=2e-114) genomic_reference:SL2.40ch05 gene_region:3120131-3123501 transcript_region:SL2.40ch05:3120131..3123501+ go_terms:GO:0006541 functional_description:"Glutamine amidotransferase (AHRD V1 *-*- D0DPX0_9LACO); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00003548g0008.1 protein AED:0.33 eAED:0.35 QI:37|0.5|0.6|0.8|1|0.8|5|0|250; (*GB) gi|255572164|ref|XP_002527022.1| (e_value=8e-69) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G15030.1 (e_value=1e-61) | Symbols: | Protein of unknown function (DUF789) | chr1:5177895-5179853 FORWARD LENGTH=360;; (*ITAG) Solyc05g008920.2.1 (e_value=5e-109) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00003548g0010.1 protein AED:0.41 eAED:0.59 QI:0|0|0|1|0|0|2|0|92; (*ITAG) Solyc10g061880.1.1 (e_value=6e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:53294435-53294869 transcript_region:SL2.40ch10:53294435..53294869+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004491g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|1|1|4|0|517; (*GB) gi|85068608|gb|ABC69384.1| (e_value=0.0) CYP98A33v1 [Nicotiana tabacum];; (*SWP) sp|O22203|C98A3_ARATH (e_value=0.0) Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1;; (*TAIR) AT2G40890.1 (e_value=0.0) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc10g078240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59412300-59414857 transcript_region:SL2.40ch10:59412300..59414857- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004491g0009.1 protein AED:0.25 eAED:0.28 QI:7|0.71|0.5|1|0.28|0.25|8|235|385; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=0.0) transcription factor IIIA [Solanum lycopersicum];; (*SWP) sp|Q8VHT7|TF3A_MOUSE (e_value=7e-26) Transcription factor IIIA OS=Mus musculus GN=Gtf3a PE=2 SV=2;; (*TAIR) AT1G72050.2 (e_value=2e-87) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412;; (*ITAG) Solyc10g077110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00052511g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|312; (*GB) gi|255549507|ref|XP_002515806.1| (e_value=3e-68) transcription factor, putative [Ricinus communis];; (*TAIR) AT2G35640.1 (e_value=1e-48) | Symbols: | Homeodomain-like superfamily protein | chr2:14982835-14984182 FORWARD LENGTH=340;; (*ITAG) Solyc02g069390.1.1 (e_value=4e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33877631-33879483 transcript_region:SL2.40ch02:33877631..33879483- go_terms:GO:0003700 functional_description:"Sh4 homologue protein (AHRD V1 *-*- B6ZKM0_9POAL); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00052511g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|255561767|ref|XP_002521893.1| (e_value=5e-38) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G37870.1 (e_value=2e-35) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc03g079880.2.1 (e_value=2e-22) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00052826g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|225448503|ref|XP_002272821.1| (e_value=8e-64) PREDICTED: LOB domain-containing protein 21 [Vitis vinifera];; (*SWP) sp|Q9SRL8|LBD21_ARATH (e_value=7e-51) LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1;; (*TAIR) AT3G11090.1 (e_value=5e-52) | Symbols: LBD21 | LOB domain-containing protein 21 | chr3:3475036-3475533 FORWARD LENGTH=165;; (*ITAG) Solyc03g095940.1.1 (e_value=1e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51109385-51109897 transcript_region:SL2.40ch03:51109385..51109897+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 ***- D7L9U4_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00052826g0009.1 protein AED:0.00 eAED:0.00 QI:182|1|0.5|1|0|0.5|2|0|235; (*GB) gi|225448487|ref|XP_002270666.1| (e_value=6e-79) PREDICTED: uncharacterized protein LOC100255332 [Vitis vinifera];; (*TAIR) AT3G56010.1 (e_value=4e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20788758-20789656 FORWARD LENGTH=201;; (*ITAG) Solyc03g095990.1.1 (e_value=3e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:51231325-51231963 transcript_region:SL2.40ch03:51231325..51231963- functional_description:"Unknown Protein (AHRD V1)"; NbS00052826g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|147805136|emb|CAN73347.1| (e_value=4e-112) hypothetical protein VITISV_037919 [Vitis vinifera];; (*SWP) sp|Q9LY43|PP283_ARATH (e_value=6e-92) Pentatricopeptide repeat-containing protein At3g56030 OS=Arabidopsis thaliana GN=At3g56030 PE=2 SV=2;; (*TAIR) AT3G56030.1 (e_value=5e-93) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:20791259-20792314 FORWARD LENGTH=351;; (*ITAG) Solyc03g095960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:51114552-51115541 transcript_region:SL2.40ch03:51114552..51115541- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEH5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031370g0001.1 protein AED:0.28 eAED:0.35 QI:0|0|0|1|0|0|3|0|123; (*GB) gi|356549421|ref|XP_003543092.1| (e_value=2e-39) PREDICTED: uncharacterized protein LOC100784604 [Glycine max];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=2e-32) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=3e-40) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc10g005460.2.1 (e_value=4e-41) genomic_reference:SL2.40ch10 gene_region:337760-339411 transcript_region:SL2.40ch10:337760..339411- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00031370g0112.1 protein AED:0.08 eAED:0.09 QI:118|0.33|0.25|1|0.33|0.25|4|0|434 NbS00028438g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|312231978|gb|ADQ53450.1| (e_value=2e-70) plastid thioredoxin M precursor [Nicotiana tabacum];; (*SWP) sp|P48384|TRXM_PEA (e_value=2e-52) Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G15360.1 (e_value=4e-53) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc07g063190.2.1 (e_value=1e-62) genomic_reference:SL2.40ch07 gene_region:62954842-62957348 transcript_region:SL2.40ch07:62954842..62957348+ go_terms:GO:0004857,GO:0008047 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0004857,GO:0008047 NbS00015999g0010.1 protein AED:0.09 eAED:0.09 QI:256|1|1|1|1|1|6|244|405; (*GB) gi|225439086|ref|XP_002265705.1| (e_value=4e-118) PREDICTED: uncharacterized protein LOC100255300 [Vitis vinifera];; (*TAIR) AT5G01970.1 (e_value=4e-95) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:373014-374651 REVERSE LENGTH=351;; (*ITAG) Solyc10g074800.1.1 (e_value=8e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57836904-57839499 transcript_region:SL2.40ch10:57836904..57839499+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015999g0013.1 protein AED:0.09 eAED:0.29 QI:0|0|0|1|0.5|0.42|7|0|516; (*GB) gi|224140639|ref|XP_002323689.1| (e_value=5e-49) bromodomain protein [Populus trichocarpa];; (*TAIR) AT1G20670.1 (e_value=6e-19) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc09g055660.1.1 (e_value=9e-172) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:39118981-39121727 transcript_region:SL2.40ch09:39118981..39121727+ functional_description:"Bromodomain protein (AHRD V1 *--- B9IGX7_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00003673g0009.1 protein AED:0.03 eAED:0.03 QI:25|1|1|1|0|0.66|3|50|94; (*GB) gi|547743|sp|Q02214.1|ITR1_NICSY (e_value=3e-47) RecName: Full=Trypsin inhibitor 1; AltName: Full=NSTI-I; AltName: Full=Trypsin inhibitor I; Flags: Precursor;; (*SWP) sp|Q02214|ITR1_NICSY (e_value=8e-49) Trypsin inhibitor 1 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT2G38870.1 (e_value=1e-17) | Symbols: | Serine protease inhibitor, potato inhibitor I-type family protein | chr2:16236546-16237050 REVERSE LENGTH=70;; (*ITAG) Solyc10g086090.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64370595-64371203 transcript_region:SL2.40ch10:64370595..64371203- go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q53X28_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00003673g0008.1 protein AED:0.19 eAED:0.19 QI:400|0.9|0.90|1|1|1|11|588|570; (*GB) gi|224138674|ref|XP_002322873.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A2QVV2|CREC_ASPNC (e_value=2e-55) Probable catabolite repression protein creC OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=creC PE=3 SV=1;; (*TAIR) AT3G53390.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:19792781-19796428 FORWARD LENGTH=558;; (*ITAG) Solyc10g086070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64360537-64366949 transcript_region:SL2.40ch10:64360537..64366949+ go_terms:GO:0000166 functional_description:"Wd-repeat protein (AHRD V1 **-- Q179V3_AEDAE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00003673g0010.1 protein AED:0.22 eAED:0.22 QI:116|0|1|1|1|1|2|221|82; (*GB) gi|218290|dbj|BAA02823.1| (e_value=2e-35) genetic tumor-related proteinase inhibitor I precursor [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|Q02214|ITR1_NICSY (e_value=3e-35) Trypsin inhibitor 1 OS=Nicotiana sylvestris PE=2 SV=1;; (*ITAG) Solyc10g086090.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64370595-64371203 transcript_region:SL2.40ch10:64370595..64371203- go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q53X28_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00010331g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|0.88|1|0.75|0.77|9|569|455; (*GB) gi|89202791|gb|AAL09044.3|AF418563_1 (e_value=0.0) calcium-dependent protein kinase 2 [Solanum tuberosum];; (*SWP) sp|Q38868|CDPK9_ARATH (e_value=0.0) Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana GN=CPK9 PE=1 SV=1;; (*TAIR) AT3G20410.1 (e_value=0.0) | Symbols: CPK9 | calmodulin-domain protein kinase 9 | chr3:7116388-7118824 FORWARD LENGTH=541;; (*ITAG) Solyc07g064610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63903803-63909109 transcript_region:SL2.40ch07:63903803..63909109+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q944W9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00049937g0006.1 protein AED:0.00 eAED:0.00 QI:151|1|1|1|1|1|2|188|495; (*GB) gi|359483464|ref|XP_003632962.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84JR3|PP334_ARATH (e_value=5e-180) Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1;; (*TAIR) AT4G21705.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492;; (*ITAG) Solyc02g078350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37647670-37649730 transcript_region:SL2.40ch02:37647670..37649730+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049937g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|476; (*GB) gi|255556037|ref|XP_002519053.1| (e_value=0.0) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q9ZPH2|GRS17_ARATH (e_value=0.0) Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1;; (*TAIR) AT4G04950.1 (e_value=0.0) | Symbols: | thioredoxin family protein | chr4:2517882-2519924 REVERSE LENGTH=488;; (*ITAG) Solyc02g078360.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:37652619-37657447 transcript_region:SL2.40ch02:37652619..37657447- go_terms:GO:0005080 functional_description:"Thioredoxin family protein (AHRD V1 **-- D7M1V6_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0005080 NbS00049937g0005.1 protein AED:0.11 eAED:0.13 QI:0|0|0|1|0|0|2|0|158; (*GB) gi|356495198|ref|XP_003516466.1| (e_value=3e-45) PREDICTED: heat stress transcription factor B-2a-like [Glycine max];; (*ITAG) Solyc02g078340.2.1 (e_value=6e-71) genomic_reference:SL2.40ch02 gene_region:37643661-37646059 transcript_region:SL2.40ch02:37643661..37646059+ go_terms:GO:0003700 functional_description:"Heat stress transcription factor (AHRD V1 **** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00011567g0011.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|180; (*GB) gi|224137888|ref|XP_002326465.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=1e-51) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=7e-53) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc10g039280.1.1 (e_value=1e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20931712-20936807 transcript_region:SL2.40ch10:20931712..20936807+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00011567g0012.1 protein AED:0.41 eAED:0.42 QI:0|0.6|0.5|1|0.8|0.5|6|0|235; (*GB) gi|225453422|ref|XP_002274957.1| (e_value=4e-92) PREDICTED: FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WRJ7|FK202_ARATH (e_value=3e-78) Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1;; (*TAIR) AT3G60370.1 (e_value=2e-79) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:22315000-22316533 REVERSE LENGTH=242;; (*ITAG) Solyc10g039270.1.1 (e_value=1e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:20899673-20903367 transcript_region:SL2.40ch10:20899673..20903367- go_terms:GO:0003755,GO:0016491 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-** C6E462_GEOSM); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0003755,GO:0016491 NbS00011567g0007.1 protein AED:0.25 eAED:0.26 QI:0|0.88|0.8|1|1|1|10|0|616; (*GB) gi|297734594|emb|CBI16645.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5D6|CAAT9_ARATH (e_value=0.0) Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1;; (*TAIR) AT1G05940.1 (e_value=0.0) | Symbols: CAT9 | cationic amino acid transporter 9 | chr1:1801365-1803942 REVERSE LENGTH=569;; (*ITAG) Solyc10g018600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8719887-8729114 transcript_region:SL2.40ch10:8719887..8729114+ go_terms:GO:0005289 functional_description:"Amino acid transporter (AHRD V1 **** B7GLG7_ANOFW); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289 NbC25671890g0001.1 protein AED:0.76 eAED:0.88 QI:0|0|0.5|1|0|0.5|2|59|291; (*GB) gi|224118870|ref|XP_002317927.1| (e_value=4e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18560.1 (e_value=8e-94) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690;; (*ITAG) Solyc03g119830.2.1 (e_value=6e-130) genomic_reference:SL2.40ch03 gene_region:62445233-62448653 transcript_region:SL2.40ch03:62445233..62448653- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q10P19_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00009034g0003.1 protein AED:0.46 eAED:0.54 QI:0|0|0|0.66|1|1|3|0|247; (*GB) gi|225445146|ref|XP_002280643.1| (e_value=1e-25) PREDICTED: E3 ubiquitin-protein ligase ATL42 [Vitis vinifera];; (*SWP) sp|Q9SL78|ATL12_ARATH (e_value=4e-19) Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=2 SV=1;; (*TAIR) AT2G20030.1 (e_value=3e-20) | Symbols: | RING/U-box superfamily protein | chr2:8647813-8648985 FORWARD LENGTH=390;; (*ITAG) Solyc12g007320.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1709310-1710455 transcript_region:SL2.40ch12:1709310..1710455- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00042715g0001.1 protein AED:0.20 eAED:0.33 QI:0|0|0|1|0|0|2|0|145; (*ITAG) Solyc01g007640.2.1 (e_value=1e-12) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00015080g0008.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|640; (*GB) gi|224138770|ref|XP_002322897.1| (e_value=1e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02390.1 (e_value=4e-68) | Symbols: | Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835;; (*ITAG) Solyc10g084750.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63488111-63491575 transcript_region:SL2.40ch10:63488111..63491575+ go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1)"; GO:0005975 NbS00015080g0015.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|0.66|0.75|4|0|190; (*ITAG) Solyc10g084750.1.1 (e_value=6e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63488111-63491575 transcript_region:SL2.40ch10:63488111..63491575+ go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1)"; GO:0005975 NbS00015080g0016.1 protein AED:0.09 eAED:0.16 QI:0|0|0|1|0.25|0.2|5|0|480; (*GB) gi|297746088|emb|CBI16144.3| (e_value=9e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZV25|P2C23_ARATH (e_value=3e-114) Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1;; (*TAIR) AT2G28890.1 (e_value=2e-115) | Symbols: PLL4 | poltergeist like 4 | chr2:12405799-12408062 REVERSE LENGTH=654;; (*ITAG) Solyc09g010780.2.1 (e_value=6e-154) genomic_reference:SL2.40ch09 gene_region:4070839-4073437 transcript_region:SL2.40ch09:4070839..4073437- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00021514g0027.1 protein AED:0.16 eAED:0.16 QI:257|0.8|0.72|1|0.8|0.81|11|0|778; (*GB) gi|359483606|ref|XP_002271969.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera];; (*TAIR) AT1G29370.1 (e_value=9e-152) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc02g071180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00021514g0001.1 protein AED:0.40 eAED:0.40 QI:0|1|0.66|1|1|1|6|0|224; (*GB) gi|225463388|ref|XP_002273366.1| (e_value=2e-82) PREDICTED: uncharacterized protein LOC100265908 [Vitis vinifera];; (*TAIR) AT1G29390.1 (e_value=1e-73) | Symbols: COR314-TM2, COR413IM2 | cold regulated 314 thylakoid membrane 2 | chr1:10286409-10287878 REVERSE LENGTH=226;; (*ITAG) Solyc02g071210.2.1 (e_value=1e-131) genomic_reference:SL2.40ch02 gene_region:35264074-35268444 transcript_region:SL2.40ch02:35264074..35268444- functional_description:"Cold acclimation protein COR413-like (AHRD V1 *-*- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 "; NbS00021514g0028.1 protein AED:0.43 eAED:0.43 QI:0|0.71|0.75|0.75|0.85|0.87|8|577|183; (*GB) gi|225463408|ref|XP_002274043.1| (e_value=4e-55) PREDICTED: programmed cell death protein 5-like [Vitis vinifera];; (*SWP) sp|Q5RBT0|PDCD5_PONAB (e_value=2e-19) Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3;; (*TAIR) AT1G29850.1 (e_value=6e-53) | Symbols: | double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129;; (*ITAG) Solyc02g071150.2.1 (e_value=4e-64) genomic_reference:SL2.40ch02 gene_region:35217704-35225700 transcript_region:SL2.40ch02:35217704..35225700- go_terms:GO:0005515,GO:0003690 functional_description:"DNA-binding protein (AHRD V1 **** B7R4T4_9EURY); contains Interpro domain(s) IPR002836 DNA-binding TFAR19-related protein "; GO:0005515,GO:0003690 NbS00021514g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|255567017|ref|XP_002524491.1| (e_value=1e-92) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g081330.2.1 (e_value=2e-107) genomic_reference:SL2.40ch04 gene_region:62945005-62948114 transcript_region:SL2.40ch04:62945005..62948114- functional_description:"Chromosome 11 contig 1 DNA sequence. (Fragment) (AHRD V1 *-*- Q00Z75_OSTTA)"; NbS00021514g0006.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|255557419|ref|XP_002519740.1| (e_value=8e-155) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29790.2 (e_value=4e-145) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10430025-10431161 FORWARD LENGTH=378;; (*ITAG) Solyc02g071160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35231145-35234551 transcript_region:SL2.40ch02:35231145..35234551+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ)"; NbS00021514g0030.1 protein AED:0.26 eAED:0.27 QI:95|0.72|0.66|1|0.72|0.83|12|0|461; (*GB) gi|19774137|gb|AAL99045.1|AF487527_1 (e_value=0.0) D1 protease-like protein precursor [Nicotiana plumbaginifolia];; (*SWP) sp|P42784|CTPA_SYNP2 (e_value=4e-64) Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2;; (*TAIR) AT5G46390.2 (e_value=3e-171) | Symbols: | Peptidase S41 family protein | chr5:18816612-18819148 FORWARD LENGTH=489;; (*ITAG) Solyc02g071190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35251500-35259662 transcript_region:SL2.40ch02:35251500..35259662+ go_terms:GO:0004252 functional_description:"Carboxyl-terminal-processing protease (AHRD V1 ***- B6SPN8_MAIZE); contains Interpro domain(s) IPR004447 Peptidase S41A, C-terminal protease "; GO:0004252 NbS00021514g0025.1 protein AED:0.29 eAED:0.29 QI:57|0.8|0.83|1|0.8|0.83|6|0|177; (*GB) gi|225463398|ref|XP_002273766.1| (e_value=4e-96) PREDICTED: coatomer subunit zeta-1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6Z844|COPZ2_ORYSJ (e_value=2e-89) Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1;; (*TAIR) AT1G60970.1 (e_value=6e-89) | Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177;; (*ITAG) Solyc02g071170.2.1 (e_value=4e-111) genomic_reference:SL2.40ch02 gene_region:35235726-35240040 transcript_region:SL2.40ch02:35235726..35240040+ go_terms:GO:0005515 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- Q9MAZ0_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0005515 NbS00021514g0029.1 protein AED:0.41 eAED:0.41 QI:0|1|0.33|1|1|0.66|3|0|279; (*GB) gi|255557427|ref|XP_002519744.1| (e_value=6e-45) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|O65399|E131_ARATH (e_value=2e-20) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G29380.1 (e_value=1e-38) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:10284209-10285671 FORWARD LENGTH=315;; (*ITAG) Solyc02g071200.2.1 (e_value=2e-70) genomic_reference:SL2.40ch02 gene_region:35261261-35263321 transcript_region:SL2.40ch02:35261261..35263321+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00021514g0007.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|224116684|ref|XP_002331852.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G29790.2 (e_value=3e-19) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10430025-10431161 FORWARD LENGTH=378;; (*ITAG) Solyc02g071160.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:35231145-35234551 transcript_region:SL2.40ch02:35231145..35234551+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ)"; NbS00000219g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|224087094|ref|XP_002308063.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|O22845|CML5_ARATH (e_value=2e-39) Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2;; (*TAIR) AT2G43290.1 (e_value=1e-40) | Symbols: MSS3 | Calcium-binding EF-hand family protein | chr2:17991308-17991955 REVERSE LENGTH=215;; (*ITAG) Solyc07g007950.1.1 (e_value=2e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2646086-2646754 transcript_region:SL2.40ch07:2646086..2646754+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00000219g0006.1 protein AED:0.39 eAED:0.39 QI:0|1|0.6|1|0.75|0.8|5|139|274; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=5e-102) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.1 (e_value=3e-79) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=264;; (*ITAG) Solyc07g007960.2.1 (e_value=3e-133) genomic_reference:SL2.40ch07 gene_region:2649752-2657807 transcript_region:SL2.40ch07:2649752..2657807- functional_description:"CUE domain containing protein (AHRD V1 **-- B6TIC6_MAIZE); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00036670g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|76160933|gb|ABA40430.1| (e_value=3e-99) ribosomal protein L27a-like protein [Solanum tuberosum];; (*SWP) sp|P49637|R27A3_ARATH (e_value=3e-86) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=3e-87) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc06g071720.1.1 (e_value=8e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40574165-40574611 transcript_region:SL2.40ch06:40574165..40574611- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00000296g0011.1 protein AED:0.07 eAED:0.08 QI:211|0.85|0.87|1|0.85|0.75|8|0|498; (*GB) gi|204022226|dbj|BAG71198.1| (e_value=0.0) ent-kaurene oxidase 2 [Lactuca sativa];; (*SWP) sp|Q93ZB2|KO1_ARATH (e_value=0.0) Ent-kaurene oxidase, chloroplastic OS=Arabidopsis thaliana GN=KO1 PE=1 SV=2;; (*TAIR) AT5G25900.1 (e_value=0.0) | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 | chr5:9036073-9038278 FORWARD LENGTH=509;; (*ITAG) Solyc04g083160.1.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61590211-61594739 transcript_region:SL2.40ch04:61590211..61594739- go_terms:GO:0010241 functional_description:"cytochrome P450"; GO:0010241 NbS00000296g0001.1 protein AED:0.20 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|359492305|ref|XP_002265283.2| (e_value=2e-78) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=8e-77) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=6e-78) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=6e-81) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00000296g0002.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|356515975|ref|XP_003526672.1| (e_value=3e-15) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like [Glycine max];; (*TAIR) AT4G08350.1 (e_value=8e-13) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=4e-16) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00000296g0012.1 protein AED:0.19 eAED:0.19 QI:299|0.83|0.57|0.85|0.66|0.71|7|0|559; (*GB) gi|302142388|emb|CBI19591.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S2E6|Y1235_ORYSJ (e_value=9e-33) B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica GN=Os01g0723500 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=5e-20) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc04g079590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61597480-61603476 transcript_region:SL2.40ch04:61597480..61603476+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0619600 (AHRD V1 ***- Y3196_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00000296g0101.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|230 NbS00000296g0110.1 protein AED:0.27 eAED:0.27 QI:377|0.88|1|1|0.94|0.89|19|267|578 NbS00002371g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|95; (*GB) gi|225438448|ref|XP_002277084.1| (e_value=9e-32) PREDICTED: 60S ribosomal protein L19, mitochondrial [Vitis vinifera];; (*TAIR) AT4G35490.1 (e_value=2e-23) | Symbols: MRPL11 | mitochondrial ribosomal protein L11 | chr4:16855918-16856385 FORWARD LENGTH=155;; (*ITAG) Solyc02g082500.1.1 (e_value=4e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40772013-40772480 transcript_region:SL2.40ch02:40772013..40772480+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B4FC48_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "; GO:0003735,GO:0005515 NbS00002371g0004.1 protein AED:0.27 eAED:0.33 QI:0|0.33|0|1|0|0|4|0|213; (*GB) gi|224074273|ref|XP_002304332.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SD02|P2C47_ARATH (e_value=3e-91) Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1;; (*TAIR) AT3G51470.1 (e_value=2e-92) | Symbols: | Protein phosphatase 2C family protein | chr3:19097924-19099244 REVERSE LENGTH=361;; (*ITAG) Solyc02g082490.2.1 (e_value=9e-109) genomic_reference:SL2.40ch02 gene_region:40767940-40771145 transcript_region:SL2.40ch02:40767940..40771145+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00006854g0001.1 protein AED:0.24 eAED:0.24 QI:140|0.5|1|1|0.5|0.33|3|269|420; (*GB) gi|225429764|ref|XP_002280551.1| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100245643 [Vitis vinifera];; (*TAIR) AT4G31450.1 (e_value=2e-17) | Symbols: | RING/U-box superfamily protein | chr4:15255955-15257977 REVERSE LENGTH=497;; (*ITAG) Solyc08g006460.2.1 (e_value=9e-117) genomic_reference:SL2.40ch08 gene_region:1062022-1065021 transcript_region:SL2.40ch08:1062022..1065021+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbC23293213g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|356574489|ref|XP_003555379.1| (e_value=4e-21) PREDICTED: uncharacterized protein LOC100783153 [Glycine max];; (*SWP) sp|Q67ZM4|ADF7_ARATH (e_value=3e-21) Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1;; (*TAIR) AT4G25590.1 (e_value=2e-22) | Symbols: ADF7 | actin depolymerizing factor 7 | chr4:13059137-13060050 REVERSE LENGTH=137;; (*ITAG) Solyc01g094400.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:77662552-77664208 transcript_region:SL2.40ch01:77662552..77664208- go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00007439g0006.1 protein AED:0.41 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|101 NbS00007439g0022.1 protein AED:0.34 eAED:0.50 QI:0|0|0|0.8|0.25|0.4|5|0|251; (*ITAG) Solyc06g008150.2.1 (e_value=8e-24) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00007439g0023.1 protein AED:0.29 eAED:0.29 QI:59|0.75|0.6|0.8|1|1|5|728|68; (*GB) gi|147775328|emb|CAN77081.1| (e_value=3e-26) hypothetical protein VITISV_003990 [Vitis vinifera];; (*TAIR) AT4G33480.1 (e_value=3e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr4:16105804-16108497 REVERSE LENGTH=336;; (*ITAG) Solyc04g015480.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:5684850-5691675 transcript_region:SL2.40ch04:5684850..5691675+ functional_description:"cDNA clone 006-204-H08 full insert sequence (AHRD V1 *-*- B7E442_ORYSJ)"; NbS00007439g0020.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.2|1|0.25|0.6|5|0|252; (*GB) gi|225438392|ref|XP_002275313.1| (e_value=2e-73) PREDICTED: uncharacterized protein LOC100256147 [Vitis vinifera];; (*TAIR) AT4G33480.1 (e_value=7e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr4:16105804-16108497 REVERSE LENGTH=336;; (*ITAG) Solyc04g015480.2.1 (e_value=4e-110) genomic_reference:SL2.40ch04 gene_region:5684850-5691675 transcript_region:SL2.40ch04:5684850..5691675+ functional_description:"cDNA clone 006-204-H08 full insert sequence (AHRD V1 *-*- B7E442_ORYSJ)"; NbS00019817g0013.1 protein AED:0.12 eAED:0.12 QI:264|0.81|0.75|1|0.81|0.91|12|0|435; (*GB) gi|225443326|ref|XP_002262765.1| (e_value=0.0) PREDICTED: metal tolerance protein C4 [Vitis vinifera];; (*SWP) sp|Q8H1G3|MTPC4_ARATH (e_value=2e-174) Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1;; (*TAIR) AT1G51610.1 (e_value=2e-175) | Symbols: | Cation efflux family protein | chr1:19136625-19139621 FORWARD LENGTH=457;; (*ITAG) Solyc06g063250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36336794-36343467 transcript_region:SL2.40ch06:36336794..36343467- go_terms:GO:0005385,GO:0003700 functional_description:"Cation diffusion facilitator family transporter (AHRD V1 **** D0LPV3_HALO1); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0005385,GO:0003700 NbS00019817g0012.1 protein AED:0.31 eAED:0.32 QI:178|0.75|0.76|1|0.33|0.53|13|0|526; (*GB) gi|359483238|ref|XP_003632926.1| (e_value=0.0) PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Vitis vinifera];; (*SWP) sp|Q9C512|MNS1_ARATH (e_value=0.0) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1;; (*TAIR) AT1G51590.1 (e_value=0.0) | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1:19128315-19132132 REVERSE LENGTH=560;; (*ITAG) Solyc03g123900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64644578-64660207 transcript_region:SL2.40ch03:64644578..64660207- go_terms:GO:0004571,GO:0004559 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** Q9SEH8_SOYBN); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571,GO:0004559 NbS00007790g0004.1 protein AED:0.10 eAED:0.10 QI:289|1|1|1|1|1|2|435|316; (*GB) gi|255550018|ref|XP_002516060.1| (e_value=1e-159) Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis];; (*SWP) sp|Q08DK7|MCATL_BOVIN (e_value=3e-58) Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1;; (*TAIR) AT1G79900.1 (e_value=2e-151) | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate carrier family protein | chr1:30052524-30053599 REVERSE LENGTH=296;; (*ITAG) Solyc06g066680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38284835-38287950 transcript_region:SL2.40ch06:38284835..38287950- go_terms:GO:0015227 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- D2VIZ2_NAEGR); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015227 NbS00007790g0006.1 protein AED:0.11 eAED:0.24 QI:6|0.5|0|1|0|0|3|0|172; (*GB) gi|110349919|emb|CAJ19273.1| (e_value=3e-78) putative RNA binding protein [Solanum commersonii];; (*TAIR) AT3G04610.1 (e_value=2e-26) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc06g084000.2.1 (e_value=3e-81) genomic_reference:SL2.40ch06 gene_region:45560228-45563126 transcript_region:SL2.40ch06:45560228..45563126- go_terms:GO:0003723 functional_description:"Heterogeneous nuclear ribonucleoprotein K (AHRD V1 *--- B5X1A5_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00052517g0003.1 protein AED:0.25 eAED:0.30 QI:742|1|0.83|1|1|1|6|0|214; (*GB) gi|224082490|ref|XP_002306713.1| (e_value=3e-41) SET domain protein [Populus trichocarpa];; (*SWP) sp|Q84WW6|ASHH1_ARATH (e_value=3e-33) Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=2 SV=1;; (*TAIR) AT1G76710.2 (e_value=2e-34) | Symbols: ASHH1 | SET domain group 26 | chr1:28789887-28792371 REVERSE LENGTH=492;; (*ITAG) Solyc07g008460.2.1 (e_value=1e-73) genomic_reference:SL2.40ch07 gene_region:3363412-3374716 transcript_region:SL2.40ch07:3363412..3374716+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00009031g0001.1 protein AED:0.07 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|356556416|ref|XP_003546522.1| (e_value=5e-32) PREDICTED: uncharacterized protein LOC100817225 [Glycine max];; (*TAIR) AT5G20790.1 (e_value=2e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7040046-7040627 REVERSE LENGTH=193; NbS00010319g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|0|0|3|0|95; (*ITAG) Solyc02g081640.2.1 (e_value=9e-30) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00018482g0006.1 protein AED:0.14 eAED:0.14 QI:79|1|1|1|1|1|2|110|646; (*GB) gi|338190111|gb|AEI84329.1| (e_value=0.0) lectin-domain receptor-like kinase [Nicotiana attenuata];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=6e-101) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=4e-102) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=4e-138) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00018482g0007.1 protein AED:0.37 eAED:0.67 QI:0|0|0|1|1|1|2|0|101; (*GB) gi|85068626|gb|ABC69393.1| (e_value=8e-52) CYP72A55v2 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=3e-15) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=1e-16) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g055550.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60857157-60860735 transcript_region:SL2.40ch07:60857157..60860735- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00036479g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|616; (*GB) gi|147816454|emb|CAN77435.1| (e_value=0.0) hypothetical protein VITISV_017817 [Vitis vinifera];; (*SWP) sp|Q9SX45|PPR75_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1;; (*TAIR) AT1G50270.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:18622044-18623834 FORWARD LENGTH=596;; (*ITAG) Solyc02g005280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:1862934-1864751 transcript_region:SL2.40ch02:1862934..1864751- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010287g0015.1 protein AED:0.08 eAED:0.11 QI:0|0.33|0.14|1|0.66|0.57|7|0|526; (*GB) gi|224090738|ref|XP_002309069.1| (e_value=0.0) laccase 110c [Populus trichocarpa];; (*SWP) sp|Q5N9X2|LAC4_ORYSJ (e_value=0.0) Laccase-4 OS=Oryza sativa subsp. japonica GN=LAC4 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00010287g0013.1 protein AED:0.14 eAED:0.14 QI:255|1|1|1|0.66|0.85|7|99|284; (*GB) gi|255581514|ref|XP_002531563.1| (e_value=7e-151) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q93VV0|ZDHC6_ARATH (e_value=1e-136) Probable S-acyltransferase At3g09320 OS=Arabidopsis thaliana GN=At3g09320 PE=2 SV=1;; (*TAIR) AT3G09320.1 (e_value=8e-138) | Symbols: | DHHC-type zinc finger family protein | chr3:2862142-2864113 REVERSE LENGTH=286;; (*ITAG) Solyc10g084820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63543483-63547030 transcript_region:SL2.40ch10:63543483..63547030- go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00010287g0014.1 protein AED:0.29 eAED:0.29 QI:267|0.87|0.88|1|1|1|9|377|427; (*GB) gi|38639323|gb|AAR25799.1| (e_value=0.0) oxysterol-binding protein [Solanum tuberosum];; (*SWP) sp|Q9LZM1|ORP3A_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 3A OS=Arabidopsis thaliana GN=ORP3A PE=1 SV=1;; (*TAIR) AT5G02100.1 (e_value=0.0) | Symbols: UNE18, ORP3A | Oxysterol-binding family protein | chr5:413639-416016 FORWARD LENGTH=453;; (*ITAG) Solyc10g084800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63532664-63539460 transcript_region:SL2.40ch10:63532664..63539460+ go_terms:GO:0008202 functional_description:"Oxysterol-binding protein (AHRD V1 ***- Q6ST25_SOLTU); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008202 NbS00010287g0017.1 protein AED:0.55 eAED:0.88 QI:0|0|0|1|0|0|3|0|94 NbS00025353g0003.1 protein AED:0.30 eAED:0.31 QI:13|1|0.75|1|1|1|4|0|198; (*GB) gi|225455248|ref|XP_002272754.1| (e_value=8e-34) PREDICTED: uncharacterized protein LOC100257141 [Vitis vinifera];; (*TAIR) AT4G00850.1 (e_value=2e-27) | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357675-358928 FORWARD LENGTH=223;; (*ITAG) Solyc03g082480.2.1 (e_value=6e-71) genomic_reference:SL2.40ch03 gene_region:45948144-45952630 transcript_region:SL2.40ch03:45948144..45952630+ functional_description:"SS18 protein (AHRD V1 *--- Q6FGL9_HUMAN); contains Interpro domain(s) IPR007726 SSXT "; NbS00017602g0105.1 protein AED:0.14 eAED:0.24 QI:0|0|0|0.6|0.75|0.8|5|0|714 NbS00029611g0003.1 protein AED:0.12 eAED:0.12 QI:713|0.92|0.93|1|1|1|15|333|490; (*GB) gi|359489421|ref|XP_002273752.2| (e_value=0.0) PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q9LPC6|ARK2_ARATH (e_value=0.0) Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2;; (*TAIR) AT1G01950.1 (e_value=0.0) | Symbols: ARK2 | armadillo repeat kinesin 2 | chr1:325473-330403 FORWARD LENGTH=894;; (*ITAG) Solyc01g091480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00013287g0005.1 protein AED:0.44 eAED:0.64 QI:0|0|0|1|1|1|3|0|78 NbS00013287g0007.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|327; (*GB) gi|225462217|ref|XP_002269756.1| (e_value=5e-15) PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=5e-14) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=4e-15) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc04g056740.1.1 (e_value=5e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00019660g0004.1 protein AED:0.49 eAED:0.51 QI:15|0|0|1|0|0|2|0|155; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-51) hypothetical protein [Nicotiana tabacum]; NbS00014814g0001.1 protein AED:0.35 eAED:0.46 QI:36|1|0|1|1|1|2|0|97; (*ITAG) Solyc03g097080.2.1 (e_value=1e-42) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00007043g0003.1 protein AED:0.11 eAED:0.11 QI:334|1|1|1|0.66|0.71|7|404|182; (*GB) gi|224128069|ref|XP_002320236.1| (e_value=4e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LCA1|TMP14_ARATH (e_value=2e-42) Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2;; (*TAIR) AT2G46820.2 (e_value=2e-43) | Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P subunit | chr2:19243729-19244870 FORWARD LENGTH=174;; (*ITAG) Solyc10g005050.2.1 (e_value=7e-71) genomic_reference:SL2.40ch10 gene_region:50241-52495 transcript_region:SL2.40ch10:50241..52495+ go_terms:GO:0003677 functional_description:"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic (AHRD V1 **-- TMP14_ARATH)"; GO:0003677 NbS00002154g0012.1 protein AED:0.20 eAED:0.23 QI:0|0.5|0|0.66|1|1|3|0|336; (*GB) gi|388491004|gb|AFK33568.1| (e_value=3e-138) unknown [Lotus japonicus];; (*SWP) sp|Q94B60|CLPP4_ARATH (e_value=5e-131) ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1;; (*TAIR) AT5G45390.1 (e_value=4e-132) | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18396351-18397586 FORWARD LENGTH=292;; (*ITAG) Solyc08g075750.2.1 (e_value=3e-154) genomic_reference:SL2.40ch08 gene_region:57034106-57040896 transcript_region:SL2.40ch08:57034106..57040896+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A9PA38_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00002154g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|287; (*GB) gi|388507998|gb|AFK42065.1| (e_value=7e-68) unknown [Medicago truncatula];; (*SWP) sp|B3QYE8|RS11_CHLT3 (e_value=4e-14) 30S ribosomal protein S11 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsK PE=3 SV=1;; (*TAIR) AT1G31817.1 (e_value=5e-51) | Symbols: NFD3 | Ribosomal L18p/L5e family protein | chr1:11414932-11416356 REVERSE LENGTH=314;; (*ITAG) Solyc08g075720.1.1 (e_value=3e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57012295-57012765 transcript_region:SL2.40ch08:57012295..57012765- go_terms:GO:0048027 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- A3UD87_9RHOB); contains Interpro domain(s) IPR001971 Ribosomal protein S11 "; GO:0048027 NbS00002154g0014.1 protein AED:0.38 eAED:0.38 QI:0|0.62|0.44|0.66|0.75|0.88|9|0|315; (*GB) gi|225425061|ref|XP_002271546.1| (e_value=9e-80) PREDICTED: anamorsin homolog [Vitis vinifera];; (*SWP) sp|D1I234|DRE2_VITVI (e_value=4e-81) Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1;; (*TAIR) AT5G18400.3 (e_value=6e-60) | Symbols: | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | chr5:6092955-6094876 REVERSE LENGTH=272;; (*ITAG) Solyc03g119420.2.1 (e_value=2e-117) genomic_reference:SL2.40ch03 gene_region:62090764-62095229 transcript_region:SL2.40ch03:62090764..62095229+ go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00004485g0001.1 protein AED:0.01 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|255567475|ref|XP_002524717.1| (e_value=1e-37) ccd1, putative [Ricinus communis];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=3e-25) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=9e-27) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc03g006710.1.1 (e_value=4e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:1265098-1265445 transcript_region:SL2.40ch03:1265098..1265445- go_terms:GO:0005509 functional_description:"Centrin (AHRD V1 **-- O49999_MARVE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00004485g0004.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.8|0|0|5|0|272; (*GB) gi|359474639|ref|XP_002265359.2| (e_value=3e-85) PREDICTED: cyclin-dependent kinase F-4-like [Vitis vinifera];; (*SWP) sp|Q6Z8C8|CDKF4_ORYSJ (e_value=6e-74) Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1;; (*TAIR) AT4G19110.2 (e_value=3e-85) | Symbols: | Protein kinase superfamily protein | chr4:10454770-10457468 REVERSE LENGTH=464;; (*ITAG) Solyc08g005470.2.1 (e_value=4e-101) genomic_reference:SL2.40ch08 gene_region:347999-354065 transcript_region:SL2.40ch08:347999..354065- go_terms:GO:0005524 functional_description:"Cell division protein kinase 7 (AHRD V1 ***- CDK7_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005524 NbS00049110g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|78 NbS00028973g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.25|4|0|348; (*GB) gi|26224736|gb|AAN76362.1| (e_value=2e-120) serpin-like protein, partial [Citrus x paradisi];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=3e-104) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=2e-105) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079480.2.1 (e_value=9e-135) genomic_reference:SL2.40ch04 gene_region:61543950-61545698 transcript_region:SL2.40ch04:61543950..61545698- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00028973g0003.1 protein AED:0.46 eAED:0.60 QI:0|0|0|1|1|1|3|0|150 NbS00028973g0008.1 protein AED:0.43 eAED:0.90 QI:0|0|0|1|0|0|2|0|141 NbS00038433g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.91|0.76|1|1|1|13|0|498; (*GB) gi|46095233|gb|AAP79443.2| (e_value=0.0) glycerol-3-phosphate acyltransferase [Capsicum annuum];; (*SWP) sp|Q39639|PLSB_CUCSA (e_value=0.0) Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1;; (*TAIR) AT1G32200.2 (e_value=0.0) | Symbols: ATS1, ACT1 | phospholipid/glycerol acyltransferase family protein | chr1:11602223-11605001 REVERSE LENGTH=459;; (*ITAG) Solyc08g076470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57639436-57652592 transcript_region:SL2.40ch08:57639436..57652592+ go_terms:GO:0004366 functional_description:"Glycerol-3-phosphate acyltransferase (AHRD V1 **** Q7XYH5_CAPAN); contains Interpro domain(s) IPR016222 Glycerol-3-phosphate O-acyltransferase "; GO:0004366 NbS00002395g0008.1 protein AED:0.11 eAED:0.11 QI:154|0.83|0.85|1|0.66|0.85|7|208|239; (*GB) gi|262263159|dbj|BAI48082.1| (e_value=9e-148) MIS12 homologue [Nicotiana tabacum];; (*TAIR) AT5G35520.1 (e_value=2e-45) | Symbols: MIS12, ATMIS12 | minichromosome instability 12 (mis12)-like | chr5:13701396-13702925 FORWARD LENGTH=238;; (*ITAG) Solyc03g114520.2.1 (e_value=6e-120) genomic_reference:SL2.40ch03 gene_region:58550618-58554062 transcript_region:SL2.40ch03:58550618..58554062+ go_terms:GO:0005634 functional_description:"Kinetochore protein (AHRD V1 ***- D0FYH3_NICTO); contains Interpro domain(s) IPR008685 Centromere protein Mis12 "; GO:0005634 NbS00002395g0009.1 protein AED:0.01 eAED:0.01 QI:48|1|0.5|1|1|1|2|299|148; (*GB) gi|225455758|ref|XP_002269501.1| (e_value=1e-57) PREDICTED: uridine-cytidine kinase C [Vitis vinifera];; (*TAIR) AT1G26190.1 (e_value=7e-42) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:9057285-9060433 REVERSE LENGTH=674;; (*ITAG) Solyc03g114580.2.1 (e_value=2e-66) genomic_reference:SL2.40ch03 gene_region:58573165-58583411 transcript_region:SL2.40ch03:58573165..58583411- go_terms:GO:0006171,GO:0008152,GO:0016773 functional_description:"Uridine kinase (AHRD V1 *-*- C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0006171,GO:0008152,GO:0016773 NbS00038624g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|225455840|ref|XP_002273330.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100261105 [Vitis vinifera];; (*TAIR) AT1G49000.1 (e_value=8e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18123559-18124029 REVERSE LENGTH=156;; (*ITAG) Solyc03g119810.1.1 (e_value=9e-82) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62440995-62441450 transcript_region:SL2.40ch03:62440995..62441450+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047517g0007.1 protein AED:0.34 eAED:0.50 QI:0|0|0.25|1|0.66|0.75|4|0|273; (*GB) gi|350540630|ref|NP_001234244.1| (e_value=8e-87) CONSTANS interacting protein 2a [Solanum lycopersicum];; (*SWP) sp|Q9SMP0|NFYC1_ARATH (e_value=3e-66) Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1;; (*TAIR) AT3G48590.1 (e_value=2e-67) | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234;; (*ITAG) Solyc03g110860.2.1 (e_value=1e-90) genomic_reference:SL2.40ch03 gene_region:55647896-55652698 transcript_region:SL2.40ch03:55647896..55652698+ go_terms:GO:0016563,GO:0003700 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0016563,GO:0003700 NbS00047517g0002.1 protein AED:0.41 eAED:0.48 QI:160|1|0.5|1|1|1|2|0|69; (*GB) gi|282848240|gb|ADB02901.1| (e_value=1e-29) protein transport protein SEC61 subunit gamma [Jatropha curcas];; (*SWP) sp|Q9SW34|S61G1_ARATH (e_value=4e-30) Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1;; (*TAIR) AT5G50460.1 (e_value=3e-31) | Symbols: | secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69; NbS00060097g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|1|1|1|6|0|817; (*GB) gi|365222906|gb|AEW69805.1| (e_value=0.0) Hop-interacting protein THI044 [Solanum lycopersicum];; (*SWP) sp|Q9FIG9|ARC6_ARATH (e_value=0.0) Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1;; (*TAIR) AT5G42480.1 (e_value=0.0) | Symbols: ARC6 | Chaperone DnaJ-domain superfamily protein | chr5:16985295-16988332 FORWARD LENGTH=801;; (*ITAG) Solyc04g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62709760-62714561 transcript_region:SL2.40ch04:62709760..62714561- go_terms:GO:0005515 functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 *--- B2J6V8_NOSP7); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005515 NbS00060097g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.46|0.42|1|0.53|0.5|14|0|809; (*GB) gi|297824981|ref|XP_002880373.1| (e_value=1e-157) kinesin motor family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=3e-48) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G24170.1 (e_value=1e-137) | Symbols: | ATP binding microtubule motor family protein | chr4:12543206-12546805 FORWARD LENGTH=1004;; (*ITAG) Solyc04g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62704486-62709603 transcript_region:SL2.40ch04:62704486..62709603+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00002899g0003.1 protein AED:0.26 eAED:0.26 QI:254|1|0.85|1|1|1|7|0|618; (*GB) gi|147770817|emb|CAN63166.1| (e_value=0.0) hypothetical protein VITISV_040077 [Vitis vinifera];; (*SWP) sp|Q940J9|PMT8_ARATH (e_value=0.0) Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1;; (*TAIR) AT1G04430.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623;; (*ITAG) Solyc09g090190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65089763-65093797 transcript_region:SL2.40ch09:65089763..65093797+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00024153g0005.1 protein AED:0.22 eAED:0.22 QI:15|0.66|0.75|1|0.66|0.75|4|255|479; (*GB) gi|385139883|gb|AFI41914.1| (e_value=0.0) glycosyltransferase family 14 protein [Betula platyphylla];; (*TAIR) AT1G03520.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:877948-879553 REVERSE LENGTH=447;; (*ITAG) Solyc07g054440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60072438-60079579 transcript_region:SL2.40ch07:60072438..60079579- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00039649g0007.1 protein AED:0.11 eAED:0.11 QI:229|1|1|1|1|1|3|390|516; (*GB) gi|255545694|ref|XP_002513907.1| (e_value=0.0) carbohydrate transporter, putative [Ricinus communis];; (*TAIR) AT1G78130.1 (e_value=0.0) | Symbols: UNE2 | Major facilitator superfamily protein | chr1:29400171-29401814 FORWARD LENGTH=490;; (*ITAG) Solyc04g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57582445-57585687 transcript_region:SL2.40ch04:57582445..57585687+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily transporter (AHRD V1 *--- Q2NDT2_ERYLH); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00003814g0001.1 protein AED:0.25 eAED:0.37 QI:43|0|0.5|1|0|0|2|316|23 NbS00036815g0001.1 protein AED:0.32 eAED:0.32 QI:30|-1|0|1|-1|1|1|0|63 NbS00004861g0003.1 protein AED:0.28 eAED:0.30 QI:153|0.88|0.83|1|0.82|0.83|18|0|668; (*GB) gi|356518975|ref|XP_003528150.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100782659 [Glycine max];; (*TAIR) AT1G45150.1 (e_value=0.0) | Symbols: | unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:17077615-17082330 REVERSE LENGTH=643;; (*ITAG) Solyc04g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61990127-62004498 transcript_region:SL2.40ch04:61990127..62004498- functional_description:"Myxococcales GC_trans_RRR domain protein (AHRD V1 *-*- B4UJ57_ANASK)"; NbS00021823g0007.1 protein AED:0.30 eAED:0.30 QI:183|1|1|1|1|1|8|659|548; (*GB) gi|255561391|ref|XP_002521706.1| (e_value=0.0) plant ubiquilin, putative [Ricinus communis];; (*SWP) sp|Q9JJP9|UBQL1_RAT (e_value=1e-40) Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1;; (*TAIR) AT2G17200.1 (e_value=3e-167) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc02g082800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41021911-41031456 transcript_region:SL2.40ch02:41021911..41031456- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00061559g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|215|329; (*GB) gi|356546348|ref|XP_003541588.1| (e_value=7e-79) PREDICTED: uncharacterized protein LOC100784245 [Glycine max];; (*TAIR) AT3G54390.1 (e_value=1e-73) | Symbols: | sequence-specific DNA binding transcription factors | chr3:20137912-20138863 REVERSE LENGTH=296;; (*ITAG) Solyc01g096470.2.1 (e_value=3e-76) genomic_reference:SL2.40ch01 gene_region:79318480-79320749 transcript_region:SL2.40ch01:79318480..79320749+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LUT4_ARALY)"; GO:0003700 NbS00053388g0006.1 protein AED:0.17 eAED:0.17 QI:54|1|1|1|1|1|4|378|285; (*GB) gi|255546187|ref|XP_002514153.1| (e_value=2e-121) Pyridoxal phosphate phosphatase PHOSPHO2, putative [Ricinus communis];; (*SWP) sp|Q9FZ62|PPSP2_ARATH (e_value=3e-102) Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=At1g17710 PE=2 SV=1;; (*TAIR) AT1G17710.1 (e_value=2e-103) | Symbols: | Pyridoxal phosphate phosphatase-related protein | chr1:6090763-6091975 REVERSE LENGTH=279;; (*ITAG) Solyc07g021710.2.1 (e_value=2e-126) genomic_reference:SL2.40ch07 gene_region:21223195-21224532 transcript_region:SL2.40ch07:21223195..21224532+ go_terms:GO:0003824 functional_description:"Phosphatase (AHRD V1 ***- D2V497_NAEGR); contains Interpro domain(s) IPR006384 Pyridoxal phosphate phosphatase-related "; GO:0003824 NbS00053388g0007.1 protein AED:0.18 eAED:0.18 QI:228|0.88|0.9|1|0.55|0.8|10|303|316; (*GB) gi|224122478|ref|XP_002330491.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23969|SF21_HELAN (e_value=2e-144) Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1;; (*TAIR) AT5G56750.1 (e_value=0.0) | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:22957986-22960606 FORWARD LENGTH=346;; (*ITAG) Solyc07g021700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:21207606-21210896 transcript_region:SL2.40ch07:21207606..21210896+ go_terms:GO:0005515 functional_description:"N-myc downstream regulated (Fragment) (AHRD V1 **-- Q177C7_AEDAE); contains Interpro domain(s) IPR015511 Pollen specific protein SF21 "; GO:0005515 NbS00011734g0006.1 protein AED:0.09 eAED:0.09 QI:734|1|1|1|0.5|0.44|9|967|701; (*GB) gi|147833693|emb|CAN64332.1| (e_value=0.0) hypothetical protein VITISV_014668 [Vitis vinifera];; (*TAIR) AT3G61680.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22824630-22826926 FORWARD LENGTH=649;; (*ITAG) Solyc01g095720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78675422-78678688 transcript_region:SL2.40ch01:78675422..78678688+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- C1FIH0_9CHLO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00013290g0003.1 protein AED:0.07 eAED:0.07 QI:472|1|0.5|1|1|1|2|0|422; (*GB) gi|59275989|dbj|BAD89562.1| (e_value=0.0) NTMTP1A [Nicotiana tabacum];; (*SWP) sp|Q9LXS1|MTPA2_ARATH (e_value=7e-171) Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=2;; (*TAIR) AT3G58810.2 (e_value=5e-172) | Symbols: MTPA2, ATMTPA2, MTP3 | metal tolerance protein A2 | chr3:21750551-21751849 FORWARD LENGTH=393;; (*ITAG) Solyc07g007060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1836680-1837810 transcript_region:SL2.40ch07:1836680..1837810- go_terms:GO:0015633 functional_description:"Zinc transporter (AHRD V1 **** Q947R8_EUCGR); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0015633 NbS00031876g0001.1 protein AED:0.27 eAED:0.27 QI:376|0.75|0.8|1|0.25|0.6|5|280|231 NbS00031876g0007.1 protein AED:0.24 eAED:0.24 QI:171|0.25|0.4|0.8|0.5|0.6|5|0|256; (*ITAG) Solyc04g008510.2.1 (e_value=1e-21) genomic_reference:SL2.40ch04 gene_region:2133538-2142268 transcript_region:SL2.40ch04:2133538..2142268+ functional_description:"UBX domain-containing protein (AHRD V1 ***- D7KBM2_ARALY); contains Interpro domain(s) IPR006577 UAS "; NbS00030641g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|0.5|2|0|427; (*GB) gi|419789|pir||S31196 (e_value=0.0) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=1e-152) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=8e-154) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc12g055840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47199207-47200592 transcript_region:SL2.40ch12:47199207..47200592+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00030641g0006.1 protein AED:0.16 eAED:0.16 QI:20|1|0.83|1|1|1|6|167|395; (*GB) gi|297742485|emb|CBI34634.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CAI3|CADH1_ARATH (e_value=2e-178) Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G72680.1 (e_value=2e-179) | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase | chr1:27359346-27360876 REVERSE LENGTH=355;; (*ITAG) Solyc12g055820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47174026-47180464 transcript_region:SL2.40ch12:47174026..47180464- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** B3TM03_ELAGV); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00010289g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|113205247|gb|AAT39965.2| (e_value=3e-15) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00010289g0121.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|0.5|0.66|3|0|352 NbS00010289g0120.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0.5|0.66|3|176|127 NbS00010289g0122.1 protein AED:0.39 eAED:0.42 QI:0|0|0|0.66|0|0.33|3|0|99 NbS00010289g0123.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.66|1|0.75|0.77|9|0|375 NbS00010289g0104.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|95 NbS00010289g0125.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|64 NbS00049584g0001.1 protein AED:0.22 eAED:0.23 QI:0|0.6|0.66|1|0.4|0.5|6|538|629; (*GB) gi|78217443|gb|ABB36797.1| (e_value=0.0) cryptochrome 2 [Nicotiana sylvestris];; (*SWP) sp|Q96524|CRY2_ARATH (e_value=0.0) Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2;; (*TAIR) AT1G04400.1 (e_value=0.0) | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612;; (*ITAG) Solyc09g090100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64991108-64994921 transcript_region:SL2.40ch09:64991108..64994921- go_terms:GO:0042803 functional_description:"Cryptochrome 2"; GO:0042803 NbS00040881g0002.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.2|1|1|5|0|153 NbS00018188g0002.1 protein AED:0.17 eAED:0.17 QI:14|0.66|0.57|1|1|1|7|0|755; (*GB) gi|14530687|dbj|BAB61056.1| (e_value=0.0) WRKY DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9FG77|WRKY2_ARATH (e_value=4e-173) Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1;; (*TAIR) AT5G56270.1 (e_value=3e-174) | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein 2 | chr5:22780816-22783137 FORWARD LENGTH=687;; (*ITAG) Solyc07g066220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64918419-64923896 transcript_region:SL2.40ch07:64918419..64923896- go_terms:GO:0045449 functional_description:"WRKY transcription factor 35 (AHRD V1 ***- Q7XAA6_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbC26159273g0002.1 protein AED:0.06 eAED:0.06 QI:140|1|1|1|0|0|2|150|242; (*GB) gi|225429924|ref|XP_002281202.1| (e_value=1e-92) PREDICTED: uncharacterized protein LOC100266212 [Vitis vinifera];; (*TAIR) AT5G11620.1 (e_value=3e-48) | Symbols: | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related | chr5:3739076-3740127 REVERSE LENGTH=273;; (*ITAG) Solyc08g066550.2.1 (e_value=1e-121) genomic_reference:SL2.40ch08 gene_region:52502571-52504047 transcript_region:SL2.40ch08:52502571..52504047+ go_terms:GO:0005515 functional_description:"Mitogen-activated protein kinase kinase kinase 1 (Predicted) (AHRD V1 ***- B2KI43_RHIFE); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0005515 NbS00004743g0013.1 protein AED:0.07 eAED:0.10 QI:0|0.83|0.76|1|0.83|0.84|13|0|910; (*GB) gi|359481017|ref|XP_002269553.2| (e_value=0.0) PREDICTED: exosome component 10-like [Vitis vinifera];; (*SWP) sp|Q01780|EXOSX_HUMAN (e_value=2e-72) Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2;; (*TAIR) AT5G35910.1 (e_value=0.0) | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870;; (*ITAG) Solyc10g018520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8546934-8549519 transcript_region:SL2.40ch10:8546934..8549519- go_terms:GO:0003676,GO:0005622 functional_description:"Exosome component 10 (AHRD V1 **-- Q6NVP3_XENTR); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00004743g0014.1 protein AED:0.26 eAED:0.29 QI:70|0.33|0.4|1|0.44|0.5|10|151|573; (*GB) gi|297736810|emb|CBI26011.3| (e_value=1e-97) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G17450.1 (e_value=7e-72) | Symbols: | hAT dimerisation domain-containing protein | chr3:5972793-5975684 REVERSE LENGTH=877;; (*ITAG) Solyc09g005660.2.1 (e_value=4e-28) genomic_reference:SL2.40ch09 gene_region:447193-451309 transcript_region:SL2.40ch09:447193..451309- go_terms:GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 ***- Q10BC8_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0046983 NbS00004743g0015.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.85|1|0.33|0.71|7|0|272; (*GB) gi|225439207|ref|XP_002270169.1| (e_value=4e-106) PREDICTED: polyribonucleotide nucleotidyltransferase [Vitis vinifera];; (*SWP) sp|Q6MDI2|PNP_PARUW (e_value=1e-57) Polyribonucleotide nucleotidyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=pnp PE=3 SV=2;; (*TAIR) AT3G03710.1 (e_value=2e-102) | Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922;; (*ITAG) Solyc08g066120.2.1 (e_value=2e-154) genomic_reference:SL2.40ch08 gene_region:51763034-51764840 transcript_region:SL2.40ch08:51763034..51764840+ go_terms:GO:0006396,GO:0005739 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- D1R4D6_9CHLA); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0006396,GO:0005739 NbS00017717g0013.1 protein AED:0.07 eAED:0.07 QI:73|1|1|1|0.5|0.71|7|201|275; (*GB) gi|225448588|ref|XP_002274031.1| (e_value=7e-141) PREDICTED: arogenate dehydrogenase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q944B6|TYRA1_ARATH (e_value=3e-93) Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1;; (*TAIR) AT5G34930.1 (e_value=2e-94) | Symbols: | arogenate dehydrogenase | chr5:13233391-13235522 FORWARD LENGTH=640;; (*ITAG) Solyc06g050630.2.1 (e_value=1e-178) genomic_reference:SL2.40ch06 gene_region:29856972-29858783 transcript_region:SL2.40ch06:29856972..29858783- go_terms:GO:0008152,GO:0006571 functional_description:"Prephenate dehydrogenase family protein (AHRD V1 ***- D7KDI5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0006571 NbS00017717g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.71|0.75|1|1|1|8|461|752; (*GB) gi|225448586|ref|XP_002278231.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253544 [Vitis vinifera];; (*TAIR) AT2G40400.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF399 and DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735;; (*ITAG) Solyc06g050620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29849301-29856781 transcript_region:SL2.40ch06:29849301..29856781+ functional_description:"Genome sequencing data contig C226 (AHRD V1 *-*- A8Y9R7_MICAE); contains Interpro domain(s) IPR007314 Protein of unknown function DUF399 "; NbS00017717g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|3|0|149; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-31) hypothetical protein [Nicotiana tabacum]; NbS00051294g0003.1 protein AED:0.34 eAED:0.34 QI:190|1|1|1|1|1|6|370|406; (*GB) gi|359495862|ref|XP_002266299.2| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=4e-78) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G38040.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc11g010890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3947873-3952034 transcript_region:SL2.40ch11:3947873..3952034- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9K9_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00022065g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.66|3|0|139; (*ITAG) Solyc04g077690.2.1 (e_value=5e-45) genomic_reference:SL2.40ch04 gene_region:60218657-60219981 transcript_region:SL2.40ch04:60218657..60219981- functional_description:"Unknown Protein (AHRD V1)"; NbS00000455g0105.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|471|411 NbS00000455g0102.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|83 NbS00000455g0101.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|182 NbS00000455g0112.1 protein AED:0.40 eAED:0.42 QI:277|0.90|0.83|1|0.90|0.83|12|0|225 NbS00000455g0106.1 protein AED:0.41 eAED:0.49 QI:0|0|0.33|0.66|1|1|3|493|77 NbS00000455g0111.1 protein AED:0.24 eAED:0.40 QI:0|0|0|1|0|0|2|0|88 NbS00036521g0003.1 protein AED:0.36 eAED:0.36 QI:0|0.16|0|0.71|0.16|0.28|7|0|282; (*GB) gi|8778986|gb|AAF79901.1|AC022472_10 (e_value=7e-40) Contains similarity to an unknown mRNA from Triticum sativum gb|AF004816 and contains a Lipase/Acylhydrolase with GDSL-like motif PF|00657 and FYVE zinc finger PF|01363 domain. ESTs gb|AV541158, gb|AA394699, gb|AI993442, gb|T88167, gb|BE038227, gb|AI993489, gb|T88521 come from this gene [Arabidopsis thaliana];; (*SWP) sp|Q8LD23|GDL4_ARATH (e_value=3e-35) GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=2;; (*TAIR) AT1G20120.1 (e_value=2e-36) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:6975504-6977123 FORWARD LENGTH=402;; (*ITAG) Solyc04g081760.2.1 (e_value=1e-70) genomic_reference:SL2.40ch04 gene_region:63277345-63281272 transcript_region:SL2.40ch04:63277345..63281272+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At3g43570 (AHRD V1 ***- GDL56_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00001403g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|0.77|1|1|1|9|0|349; (*GB) gi|255575275|ref|XP_002528541.1| (e_value=8e-161) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G31040.1 (e_value=2e-142) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc12g010870.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3785577-3790200 transcript_region:SL2.40ch12:3785577..3790200+ functional_description:"ATP synthase I-like protein (AHRD V1 ***- A8HNA8_CHLRE)"; NbS00001403g0013.1 protein AED:0.23 eAED:0.23 QI:47|1|1|1|0.25|0.4|5|200|298; (*GB) gi|255554981|ref|XP_002518528.1| (e_value=4e-177) Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis];; (*SWP) sp|Q8L9A9|XTH8_ARATH (e_value=4e-163) Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2;; (*TAIR) AT1G11545.1 (e_value=3e-164) | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase 8 | chr1:3878689-3880286 REVERSE LENGTH=305;; (*ITAG) Solyc03g031800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8562793-8564971 transcript_region:SL2.40ch03:8562793..8564971+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** C0IRG0_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00001403g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|4|0|311; (*GB) gi|18149189|dbj|BAB83610.1| (e_value=7e-124) 6b-interacting protein 1 [Nicotiana tabacum];; (*TAIR) AT3G58630.1 (e_value=2e-56) | Symbols: | sequence-specific DNA binding transcription factors | chr3:21683928-21685771 REVERSE LENGTH=321;; (*ITAG) Solyc12g010890.1.1 (e_value=2e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3792736-3796034 transcript_region:SL2.40ch12:3792736..3796034- functional_description:"Transcription factor (AHRD V1 **-- D7LW59_ARALY)"; NbS00026201g0011.1 protein AED:0.10 eAED:0.11 QI:107|0.75|0.76|1|0.66|0.69|13|236|773; (*GB) gi|359473015|ref|XP_003631230.1| (e_value=0.0) PREDICTED: phosphate transporter PHO1 homolog 1 isoform 2 [Vitis vinifera];; (*SWP) sp|Q93ZF5|PHO11_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 1 OS=Arabidopsis thaliana GN=PHO1-H1 PE=2 SV=1;; (*TAIR) AT1G68740.1 (e_value=0.0) | Symbols: PHO1;H1 | EXS (ERD1/XPR1/SYG1) family protein | chr1:25812735-25816574 REVERSE LENGTH=784;; (*ITAG) Solyc05g010060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4268423-4273628 transcript_region:SL2.40ch05:4268423..4273628+ go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00026201g0016.1 protein AED:0.36 eAED:0.63 QI:164|0.2|0.16|0.83|0.2|0.5|6|0|275; (*ITAG) Solyc05g010070.2.1 (e_value=5e-44) genomic_reference:SL2.40ch05 gene_region:4273949-4278144 transcript_region:SL2.40ch05:4273949..4278144+ functional_description:"DNL zinc finger family protein (AHRD V1 *--- B6TGI7_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00026201g0009.1 protein AED:0.00 eAED:0.00 QI:119|1|1|1|0|0|2|348|276; (*ITAG) Solyc05g010080.2.1 (e_value=3e-17) genomic_reference:SL2.40ch05 gene_region:4278057-4279291 transcript_region:SL2.40ch05:4278057..4279291- functional_description:"Unknown Protein (AHRD V1)"; NbS00026201g0010.1 protein AED:0.07 eAED:0.08 QI:0|0.6|0.5|1|0.6|0.5|6|189|1370; (*GB) gi|359472721|ref|XP_002277950.2| (e_value=3e-180) PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9S7I0|TADA_ARATH (e_value=5e-127) tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1;; (*TAIR) AT1G68720.1 (e_value=4e-128) | Symbols: TADA, ATTADA | tRNA arginine adenosine deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307;; (*ITAG) Solyc05g010100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4280523-4287174 transcript_region:SL2.40ch05:4280523..4287174- go_terms:GO:0016787,GO:0003824 functional_description:"tRNA-adenosine deaminase (AHRD V1 *-*- D9S0K8_9FIRM); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0016787,GO:0003824 NbS00046781g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.71|0.73|1|0.5|0.53|15|510|587; (*GB) gi|359484002|ref|XP_002272177.2| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 54-like [Vitis vinifera];; (*SWP) sp|Q9P1Q0|VPS54_HUMAN (e_value=7e-15) Vacuolar protein sorting-associated protein 54 OS=Homo sapiens GN=VPS54 PE=1 SV=2;; (*TAIR) AT4G19490.2 (e_value=0.0) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034;; (*ITAG) Solyc02g030110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15823759-15852111 transcript_region:SL2.40ch02:15823759..15852111+ go_terms:GO:0042147 functional_description:"Vacuolar protein sorting 54 family protein (AHRD V1 *-*- D3BE08_POLPA); contains Interpro domain(s) IPR012501 Vps54-like "; GO:0042147 NbS00007518g0011.1 protein AED:0.12 eAED:0.16 QI:134|0.55|0.8|1|0.88|0.8|10|365|417; (*GB) gi|117607065|gb|ABK42076.1| (e_value=0.0) 26S proteasome subunit RPN7 [Capsicum annuum];; (*SWP) sp|Q93Y35|PSMD6_ARATH (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 6 OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1;; (*TAIR) AT4G24820.2 (e_value=0.0) | Symbols: | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr4:12790471-12792599 REVERSE LENGTH=387;; (*ITAG) Solyc07g009140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4157332-4163343 transcript_region:SL2.40ch07:4157332..4163343+ go_terms:GO:0032183 functional_description:"26S proteasome non-ATPase regulatory subunit 6 (AHRD V1 ***- B4FVL1_MAIZE); contains Interpro domain(s) IPR019585 26S proteasome, regulatory subunit Rpn7 "; GO:0032183 NbS00007518g0012.1 protein AED:0.23 eAED:0.23 QI:101|0.66|0.8|1|0.55|0.6|10|397|385; (*GB) gi|359491164|ref|XP_003634232.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein in hydrogenase 1 5'region-like [Vitis vinifera];; (*SWP) sp|Q5ZMT7|ADCK1_CHICK (e_value=1e-22) Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus gallus GN=ADCK1 PE=2 SV=1;; (*TAIR) AT4G24810.2 (e_value=2e-180) | Symbols: | Protein kinase superfamily protein | chr4:12786791-12789598 REVERSE LENGTH=481;; (*ITAG) Solyc07g009150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4190366-4203458 transcript_region:SL2.40ch07:4190366..4203458+ go_terms:GO:0005515 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-- ADCK1_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005515 NbS00007518g0010.1 protein AED:0.29 eAED:0.29 QI:181|1|1|1|0.8|0.66|6|427|205; (*GB) gi|255563580|ref|XP_002522792.1| (e_value=8e-87) Neighbor of COX4, putative [Ricinus communis];; (*SWP) sp|Q9FG71|U172_ARATH (e_value=3e-81) UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1;; (*TAIR) AT5G55940.1 (e_value=2e-82) | Symbols: emb2731 | Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208;; (*ITAG) Solyc07g009160.2.1 (e_value=4e-113) genomic_reference:SL2.40ch07 gene_region:4204055-4210261 transcript_region:SL2.40ch07:4204055..4210261+ go_terms:GO:0005515 functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 "; GO:0005515 NbS00008940g0004.1 protein AED:0.04 eAED:0.04 QI:132|1|1|1|1|1|3|311|288; (*GB) gi|23451057|gb|AAN32641.1|AF416732_1 (e_value=9e-171) putative short-chain type alcohol dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9X248|FABG_THEMA (e_value=7e-34) 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=fabG PE=3 SV=1;; (*TAIR) AT3G55290.2 (e_value=4e-142) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:20502653-20503730 FORWARD LENGTH=279;; (*ITAG) Solyc10g080890.1.1 (e_value=4e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61391472-61393927 transcript_region:SL2.40ch10:61391472..61393927+ go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00023154g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|255636983|gb|ACU18824.1| (e_value=3e-70) unknown [Glycine max];; (*SWP) sp|Q6NQG7|ATL78_ARATH (e_value=3e-63) RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1;; (*TAIR) AT1G49230.1 (e_value=2e-64) | Symbols: | RING/U-box superfamily protein | chr1:18209320-18209979 FORWARD LENGTH=219;; (*ITAG) Solyc11g005320.1.1 (e_value=2e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:256938-257597 transcript_region:SL2.40ch11:256938..257597+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017426g0003.1 protein AED:0.16 eAED:0.16 QI:115|1|1|1|0.75|0.6|5|472|666; (*GB) gi|75156737|sp|Q8LLE5.1|FPP_SOLLC (e_value=0.0) RecName: Full=Filament-like plant protein; Short=LeFPP;; (*SWP) sp|Q8LLE5|FPP_SOLLC (e_value=0.0) Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1;; (*TAIR) AT1G77580.1 (e_value=5e-86) | Symbols: | Plant protein of unknown function (DUF869) | chr1:29144632-29146600 REVERSE LENGTH=629;; (*ITAG) Solyc11g012860.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5649548-5653623 transcript_region:SL2.40ch11:5649548..5653623- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 ***- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00008221g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|359479233|ref|XP_002275500.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera];; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=1e-160) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=8e-162) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g009330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3515178-3516458 transcript_region:SL2.40ch01:3515178..3516458- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00027620g0003.1 protein AED:0.09 eAED:0.09 QI:462|1|0.88|1|0.87|1|9|317|854; (*GB) gi|359490160|ref|XP_002266973.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=0.0) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT4G25160.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr4:12903360-12906669 REVERSE LENGTH=835;; (*ITAG) Solyc03g093450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48185092-48191194 transcript_region:SL2.40ch03:48185092..48191194+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00050140g0006.1 protein AED:0.08 eAED:0.08 QI:304|0.6|0.72|0.90|0.7|0.72|11|377|389; (*GB) gi|255573149|ref|XP_002527504.1| (e_value=0.0) mitotic checkpoint protein bub3, putative [Ricinus communis];; (*SWP) sp|Q9WVA3|BUB3_MOUSE (e_value=3e-100) Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2;; (*TAIR) AT3G19590.1 (e_value=6e-180) | Symbols: BUB3.1 | Transducin/WD40 repeat-like superfamily protein | chr3:6805798-6808374 FORWARD LENGTH=340;; (*ITAG) Solyc01g107160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86534713-86540689 transcript_region:SL2.40ch01:86534713..86540689+ go_terms:GO:0008017 functional_description:"Mitotic checkpoint protein BUB3 (AHRD V1 **-- B6UH61_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008017 NbS00050140g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|2981169|gb|AAC06243.1| (e_value=2e-155) osmotic stress-induced zinc-finger protein [Nicotiana tabacum];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=1e-51) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=8e-53) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc01g107170.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:86548794-86550092 transcript_region:SL2.40ch01:86548794..86550092+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc finger protein (AHRD V1 ***- A0T3Q5_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00023987g0003.1 protein AED:0.41 eAED:0.44 QI:0|0|0.5|1|1|1|2|218|61 NbS00023987g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|516; (*GB) gi|729775|sp|P41153.1|HSF8_SOLPE (e_value=0.0) RecName: Full=Heat shock factor protein HSF8; AltName: Full=Heat shock transcription factor 8; Short=HSTF 8; AltName: Full=Heat stress transcription factor;; (*SWP) sp|P41153|HSF8_SOLPE (e_value=0.0) Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1;; (*TAIR) AT1G32330.1 (e_value=1e-88) | Symbols: ATHSFA1D, HSFA1D | heat shock transcription factor A1D | chr1:11657265-11660234 REVERSE LENGTH=485;; (*ITAG) Solyc08g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:111412-116839 transcript_region:SL2.40ch08:111412..116839- go_terms:GO:0005515,GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003677 NbS00016732g0003.1 protein AED:0.33 eAED:0.41 QI:143|0|0.33|1|0|0|3|0|93; (*GB) gi|253740260|gb|ACT34764.1| (e_value=4e-18) subtilisin-like protease preproenzyme [Nicotiana tabacum];; (*ITAG) Solyc12g088760.1.1 (e_value=5e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62455467-62457716 transcript_region:SL2.40ch12:62455467..62457716+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q38708_ALNGL); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00016732g0204.1 protein AED:0.25 eAED:0.26 QI:373|0.66|0.85|1|0.83|0.57|7|317|551 NbS00016732g0207.1 protein AED:0.18 eAED:0.18 QI:192|0.33|0.25|1|1|1|4|0|314 NbS00016732g0304.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|12|2523|520 NbS00003311g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0.33|1|1|1|3|228|318; (*GB) gi|113205164|gb|ABI34277.1| (e_value=6e-75) Serine/threonine-protein kinase AtPK19 , related [Solanum lycopersicum];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=8e-39) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=6e-40) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc06g071210.2.1 (e_value=6e-75) genomic_reference:SL2.40ch06 gene_region:40195864-40199946 transcript_region:SL2.40ch06:40195864..40199946+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase 2 alpha (AHRD V1 **** KS6AA_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00010918g0003.1 protein AED:0.19 eAED:0.19 QI:204|0.83|0.71|1|0.83|0.71|7|220|230; (*ITAG) Solyc04g074770.2.1 (e_value=3e-77) genomic_reference:SL2.40ch04 gene_region:58285246-58286944 transcript_region:SL2.40ch04:58285246..58286944- functional_description:"Unknown Protein (AHRD V1)"; NbS00014584g0006.1 protein AED:0.16 eAED:0.44 QI:227|0|0.5|1|0|0|2|29|62 NbS00014584g0005.1 protein AED:0.26 eAED:0.28 QI:591|0.42|0.5|1|0.57|0.5|8|0|342; (*GB) gi|225439673|ref|XP_002267193.1| (e_value=5e-94) PREDICTED: uncharacterized protein LOC100260206 [Vitis vinifera];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=5e-53) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=4e-54) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc10g085710.1.1 (e_value=2e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64123015-64129787 transcript_region:SL2.40ch10:64123015..64129787- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA18_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00022263g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|180; (*ITAG) Solyc02g069300.1.1 (e_value=1e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:33815152-33815700 transcript_region:SL2.40ch02:33815152..33815700- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00051275g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|224072929|ref|XP_002303937.1| (e_value=6e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g096510.2.1 (e_value=3e-42) genomic_reference:SL2.40ch01 gene_region:79357168-79357921 transcript_region:SL2.40ch01:79357168..79357921- functional_description:"Sigma factor binding protein 1 (AHRD V1 *-*- D1MWZ4_CITLA); contains Interpro domain(s) IPR008889 VQ "; NbS00059066g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|1323711|gb|AAC00527.1| (e_value=6e-41) ribosomal protein L16 (mitochondrion) [Petunia sp.];; (*SWP) sp|Q04715|RM16_PETHY (e_value=2e-42) 60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1;; (*ITAG) ATMG00080.1 (e_value=3e-41) | Symbols: RPL16 | ribosomal protein L16 | chrM:25076-25615 REVERSE LENGTH=179;; (*ITAG) Solyc09g015860.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:11298987-11299502 transcript_region:SL2.40ch09:11298987..11299502+ go_terms:GO:0003735,GO:0000048 functional_description:"50S ribosomal protein L16 (AHRD V1 ***- D7A960_STAND); contains Interpro domain(s) IPR000114 Ribosomal protein L16 "; GO:0003735,GO:0000048 NbS00006539g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.33|0.5|4|0|470; (*GB) gi|224090009|ref|XP_002308905.1| (e_value=0.0) BOP/NPR1/NIM1-like regulatory protein [Populus trichocarpa];; (*SWP) sp|Q9ZVC2|NPR5_ARATH (e_value=0.0) Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1;; (*TAIR) AT2G41370.1 (e_value=0.0) | Symbols: BOP2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491;; (*ITAG) Solyc10g079750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60568549-60570482 transcript_region:SL2.40ch10:60568549..60570482- go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00045065g0001.1 protein AED:0.10 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|578 NbS00054517g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0.5|0.5|1|1|2|0|294; (*GB) gi|2853076|emb|CAA16926.1| (e_value=2e-79) putative protein [Arabidopsis thaliana];; (*SWP) sp|Q9JMK8|VPS54_RAT (e_value=2e-14) Vacuolar protein sorting-associated protein 54 OS=Rattus norvegicus GN=Vps54 PE=2 SV=1;; (*TAIR) AT4G19490.2 (e_value=3e-81) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034;; (*ITAG) Solyc02g030100.2.1 (e_value=7e-155) genomic_reference:SL2.40ch02 gene_region:15816769-15818714 transcript_region:SL2.40ch02:15816769..15818714+ functional_description:"Vacuolar protein sorting-associated protein 54 (AHRD V1 ***- B0CS25_LACBS)"; NbS00026606g0015.1 protein AED:0.25 eAED:0.22 QI:412|0.8|0.72|1|0.9|1|11|77|418; (*GB) gi|388604525|gb|AFK76482.1| (e_value=0.0) tRNA ligase [Solanum melongena];; (*TAIR) AT1G07910.2 (e_value=1e-156) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52667898-52692241 transcript_region:SL2.40ch11:52667898..52692241- go_terms:GO:0004113,GO:0003972,GO:0051731 functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 **-* Q0WZC1_WHEAT)"; GO:0004113,GO:0003972,GO:0051731 NbS00026606g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|61 NbS00026606g0002.1 protein AED:0.17 eAED:0.17 QI:25|1|1|1|1|0.33|3|284|164; (*GB) gi|365222946|gb|AEW69825.1| (e_value=1e-101) Hop-interacting protein THI105 [Solanum lycopersicum];; (*SWP) sp|Q54Y03|KAD6_DICDI (e_value=3e-56) Probable adenylate kinase isoenzyme 6 OS=Dictyostelium discoideum GN=DDB_G0278493 PE=3 SV=1;; (*TAIR) AT5G60340.1 (e_value=3e-73) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24275098-24275891 REVERSE LENGTH=178;; (*ITAG) Solyc11g072410.1.1 (e_value=3e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52664923-52667332 transcript_region:SL2.40ch11:52664923..52667332+ functional_description:"Adenylate kinase isoenzyme 6 (AHRD V1 **-- B5X3S3_SALSA)"; NbS00026606g0014.1 protein AED:0.28 eAED:0.28 QI:84|0.71|0.37|1|1|1|8|0|399; (*GB) gi|113205291|gb|AAT40552.2| (e_value=6e-138) hypothetical protein SDM1_4t00014 [Solanum demissum];; (*SWP) sp|A2VDX7|EXO5_BOVIN (e_value=2e-21) Probable exonuclease V OS=Bos taurus GN=DEM1 PE=2 SV=1;; (*TAIR) AT5G60370.1 (e_value=2e-92) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology protein 1-like, mitochondrial (InterPro:IPR019190); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24282858-24284760 FORWARD LENGTH=413;; (*ITAG) Solyc11g072400.1.1 (e_value=2e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52658674-52663835 transcript_region:SL2.40ch11:52658674..52663835+ functional_description:"Defects in morphology protein 1 homolog (AHRD V1 ***- DEM1_BOVIN); contains Interpro domain(s) IPR019190 Defects in morphology protein 1-like "; NbS00010381g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|3|0|282; (*GB) gi|22128587|gb|AAM52339.1| (e_value=1e-119) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=2e-65) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=2e-66) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00010381g0005.1 protein AED:0.51 eAED:0.60 QI:40|0.25|0.4|1|1|1|5|5|128; (*GB) gi|164520572|gb|ABY60341.1| (e_value=2e-37) At3g03780-like protein [Arabidopsis lyrata];; (*SWP) sp|O50008|METE_ARATH (e_value=2e-36) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1;; (*TAIR) AT5G17920.2 (e_value=1e-37) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=2e-38) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00010381g0009.1 protein AED:0.53 eAED:0.93 QI:0|0|0|1|0|0.5|2|0|165; (*GB) gi|224146039|ref|XP_002325856.1| (e_value=7e-54) vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa];; (*SWP) sp|P93263|METE_MESCR (e_value=5e-53) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=5e-50) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=6e-58) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00002484g0004.1 protein AED:0.04 eAED:0.04 QI:53|1|1|1|1|1|3|212|318; (*GB) gi|225439627|ref|XP_002268412.1| (e_value=1e-163) PREDICTED: cationic peroxidase 1 [Vitis vinifera];; (*SWP) sp|P22195|PER1_ARAHY (e_value=2e-119) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=2e-112) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc10g076210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58379010-58380144 transcript_region:SL2.40ch10:58379010..58380144- go_terms:GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00041408g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|168|189; (*GB) gi|225424182|ref|XP_002284123.1| (e_value=2e-77) PREDICTED: uncharacterized protein LOC100254317 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=3e-45) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G22990.1 (e_value=4e-60) | Symbols: HIPP22 | Heavy metal transport/detoxification superfamily protein | chr1:8139221-8140045 FORWARD LENGTH=152;; (*ITAG) Solyc02g091300.2.1 (e_value=3e-88) genomic_reference:SL2.40ch02 gene_region:47214338-47215294 transcript_region:SL2.40ch02:47214338..47215294+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00041408g0010.1 protein AED:0.14 eAED:0.14 QI:173|1|0.91|1|0.90|0.83|12|1049|363; (*GB) gi|296087189|emb|CBI33563.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q65JS5|FMT_BACLD (e_value=5e-58) Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=fmt PE=3 SV=1;; (*TAIR) AT1G66520.1 (e_value=0.0) | Symbols: pde194 | formyltransferase, putative | chr1:24816330-24818693 REVERSE LENGTH=355;; (*ITAG) Solyc02g091290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47205094-47211637 transcript_region:SL2.40ch02:47205094..47211637+ go_terms:GO:0008864 functional_description:"Methionyl-trna formyltransferase (AHRD V1 ***- B9GV84_POPTR); contains Interpro domain(s) IPR005794 Methionyl-tRNA formyltransferase "; GO:0008864 NbS00004367g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.75|1|0.85|0.87|8|218|530; (*GB) gi|225424693|ref|XP_002263653.1| (e_value=0.0) PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera];; (*SWP) sp|Q8CCF0|PRP31_MOUSE (e_value=4e-92) U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3;; (*TAIR) AT1G60170.1 (e_value=0.0) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485;; (*ITAG) Solyc08g078430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59406043-59410273 transcript_region:SL2.40ch08:59406043..59410273- go_terms:GO:0005515,GO:0043021 functional_description:"Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal "; GO:0005515,GO:0043021 NbS00013291g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|195606734|gb|ACG25197.1| (e_value=1e-17) 60S ribosomal protein L27a-2 [Zea mays];; (*SWP) sp|P49637|R27A3_ARATH (e_value=3e-18) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=3e-19) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc03g112360.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56836935-56837381 transcript_region:SL2.40ch03:56836935..56837381+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbC26023144g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.66|0.66|1|1|3|0|105; (*GB) gi|407355|dbj|BAA04634.1| (e_value=8e-54) PSI-H precursor [Nicotiana sylvestris];; (*SWP) sp|Q9SUI6|PSAH2_ARATH (e_value=5e-42) Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1;; (*TAIR) AT1G52230.1 (e_value=3e-43) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc03g120640.2.1 (e_value=4e-49) genomic_reference:SL2.40ch03 gene_region:63030273-63032006 transcript_region:SL2.40ch03:63030273..63032006+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "; GO:0009538 NbS00029993g0008.1 protein AED:0.11 eAED:0.11 QI:188|1|0.88|1|0.87|0.77|9|704|343; (*GB) gi|353703786|ref|NP_001238796.1| (e_value=0.0) alcohol dehydrogenase class III [Solanum lycopersicum];; (*SWP) sp|Q96533|ADHX_ARATH (e_value=0.0) Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2;; (*TAIR) AT5G43940.1 (e_value=0.0) | Symbols: HOT5, ADH2, GSNOR, ATGSNOR1, PAR2 | GroES-like zinc-binding dehydrogenase family protein | chr5:17684265-17686379 FORWARD LENGTH=379;; (*ITAG) Solyc09g064370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57150099-57154745 transcript_region:SL2.40ch09:57150099..57154745+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase (AHRD V1 **** Q1HQD0_BOMMO); contains Interpro domain(s) IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase "; GO:0004024 NbS00011785g0001.1 protein AED:0.09 eAED:0.16 QI:0|0|0|1|1|1|2|0|180; (*GB) gi|82400150|gb|ABB72814.1| (e_value=8e-62) putative 40S ribosomal protein S8-like protein [Solanum tuberosum];; (*SWP) sp|Q9FIF3|RS82_ARATH (e_value=1e-62) 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1;; (*TAIR) AT5G59240.1 (e_value=8e-64) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc07g065170.2.1 (e_value=9e-66) genomic_reference:SL2.40ch07 gene_region:64272755-64275084 transcript_region:SL2.40ch07:64272755..64275084- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- B4FGG1_MAIZE); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00034551g0006.1 protein AED:0.33 eAED:0.33 QI:145|0.83|0.85|1|0.83|0.71|7|0|327; (*GB) gi|356561961|ref|XP_003549244.1| (e_value=1e-163) PREDICTED: PCI domain-containing protein 2-like [Glycine max];; (*SWP) sp|Q5FWP8|PCID2_XENLA (e_value=2e-39) PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2 SV=1;; (*TAIR) AT2G19560.1 (e_value=6e-155) | Symbols: EER5 | proteasome family protein | chr2:8465924-8469069 REVERSE LENGTH=413;; (*ITAG) Solyc07g039210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:42924002-42930110 transcript_region:SL2.40ch07:42924002..42930110- go_terms:GO:0005515,GO:0047499 functional_description:"PCI domain-containing protein 2 homolog (AHRD V1 **-- PCID2_DROME); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515,GO:0047499 NbS00034551g0007.1 protein AED:0.17 eAED:0.17 QI:185|0.90|0.91|1|1|1|12|500|460; (*GB) gi|82400122|gb|ABB72800.1| (e_value=0.0) WD-40 repeat protein-like protein [Solanum tuberosum];; (*SWP) sp|Q54ED4|GRWD1_DICDI (e_value=2e-109) Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1;; (*TAIR) AT2G19540.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr2:8461804-8464347 FORWARD LENGTH=469;; (*ITAG) Solyc07g039200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:42919344-42923581 transcript_region:SL2.40ch07:42919344..42923581+ go_terms:GO:0042393 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 *--* GBB_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042393 NbS00009259g0007.1 protein AED:0.05 eAED:0.06 QI:176|1|0.5|1|1|1|2|0|594; (*GB) gi|225424897|ref|XP_002269734.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253553 [Vitis vinifera];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=1e-15) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G14430.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:4934359-4936053 FORWARD LENGTH=564;; (*ITAG) Solyc05g007010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1601748-1603568 transcript_region:SL2.40ch05:1601748..1603568- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00009259g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.83|0.57|1|0.33|0.28|7|0|420; (*GB) gi|350537683|ref|NP_001234816.1| (e_value=0.0) LOV/LOV protein [Solanum lycopersicum];; (*SWP) sp|O64511|TLOV1_ARATH (e_value=3e-130) Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2;; (*TAIR) AT2G02710.2 (e_value=2e-133) | Symbols: PLP, PLPA | PAS/LOV protein B | chr2:758812-760608 REVERSE LENGTH=397;; (*ITAG) Solyc05g007020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1607827-1612548 transcript_region:SL2.40ch05:1607827..1612548- go_terms:GO:0005515 functional_description:"Potassium voltage-gated channel subfamily H member 1 (AHRD V1 *--- KCNH1_RAT); contains Interpro domain(s) IPR013655 PAS fold-3 "; GO:0005515 NbS00024163g0009.1 protein AED:0.00 eAED:0.00 QI:126|1|1|1|1|1|2|97|173; (*ITAG) Solyc09g015450.2.1 (e_value=5e-42) genomic_reference:SL2.40ch09 gene_region:8795936-8796733 transcript_region:SL2.40ch09:8795936..8796733- functional_description:"Unknown Protein (AHRD V1)"; NbS00024163g0010.1 protein AED:0.17 eAED:0.17 QI:34|0.5|0.4|1|0.5|0.6|5|0|401; (*GB) gi|357506157|ref|XP_003623367.1| (e_value=0.0) hypothetical protein MTR_7g070060 [Medicago truncatula];; (*TAIR) AT2G38320.1 (e_value=1e-164) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc09g015350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8593157-8598993 transcript_region:SL2.40ch09:8593157..8598993- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00024163g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|224140483|ref|XP_002323612.1| (e_value=5e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=4e-58) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT3G08890.2 (e_value=2e-61) | Symbols: | Protein of unknown function, DUF538 | chr3:2706701-2707775 FORWARD LENGTH=170;; (*ITAG) Solyc09g015420.2.1 (e_value=6e-70) genomic_reference:SL2.40ch09 gene_region:8732762-8734631 transcript_region:SL2.40ch09:8732762..8734631+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00024163g0008.1 protein AED:0.37 eAED:0.49 QI:0|0|0.33|1|0|0|3|305|99 NbS00026869g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=4e-45) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=5e-42) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=4e-43) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011860.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4274482-4274790 transcript_region:SL2.40ch04:4274482..4274790+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00026869g0009.1 protein AED:0.35 eAED:0.37 QI:210|0.33|0.42|1|0.66|0.85|7|179|213; (*GB) gi|115462129|ref|NP_001054664.1| (e_value=5e-27) Os05g0150300 [Oryza sativa Japonica Group];; (*SWP) sp|Q7G8Y3|ISW2_ORYSJ (e_value=5e-28) Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa subsp. japonica GN=Os01g0367900 PE=2 SV=2;; (*TAIR) AT5G18620.1 (e_value=7e-27) | Symbols: CHR17 | chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1069;; (*ITAG) Solyc01g067390.2.1 (e_value=6e-29) genomic_reference:SL2.40ch01 gene_region:68257411-68268333 transcript_region:SL2.40ch01:68257411..68268333+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00026869g0010.1 protein AED:0.26 eAED:0.72 QI:34|0|0.5|1|0|0|2|0|111 NbS00004006g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.25|0|1|1|1|5|0|971; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|Q8H6B1|SPT16_MAIZE (e_value=0.0) FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82651948-82655945 transcript_region:SL2.40ch01:82651948..82655945- go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00004006g0002.1 protein AED:0.04 eAED:0.04 QI:332|1|0.5|1|0|0|2|0|1140; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=0.0) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82648492-82651919 transcript_region:SL2.40ch01:82648492..82651919+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00018720g0001.1 protein AED:0.22 eAED:0.22 QI:700|0.75|0.8|1|1|1|5|259|328; (*GB) gi|359490175|ref|XP_002268693.2| (e_value=7e-103) PREDICTED: uncharacterized protein LOC100254941 [Vitis vinifera];; (*TAIR) AT5G62260.1 (e_value=3e-58) | Symbols: | AT hook motif DNA-binding family protein | chr5:25009331-25011348 FORWARD LENGTH=404;; (*ITAG) Solyc06g035430.2.1 (e_value=7e-160) genomic_reference:SL2.40ch06 gene_region:20998594-21003305 transcript_region:SL2.40ch06:20998594..21003305- functional_description:"AT-hook motif nuclear localized protein 3 (AHRD V1 ***- Q9SB31_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; NbS00009348g0007.1 protein AED:0.14 eAED:0.14 QI:940|1|0.85|1|0.66|0.57|7|329|649; (*GB) gi|225429428|ref|XP_002278577.1| (e_value=0.0) PREDICTED: protein EARLY FLOWERING 3-like [Vitis vinifera];; (*SWP) sp|O82804|ELF3_ARATH (e_value=3e-87) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=2e-88) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc11g070100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51718068-51722538 transcript_region:SL2.40ch11:51718068..51722538+ functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; NbS00009348g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.72|0.81|1|1|11|0|545; (*GB) gi|225429422|ref|XP_002276103.1| (e_value=0.0) PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VY07|EPN1_ARATH (e_value=4e-169) Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1;; (*TAIR) AT5G11710.1 (e_value=3e-170) | Symbols: | ENTH/VHS family protein | chr5:3772981-3776316 FORWARD LENGTH=560;; (*ITAG) Solyc11g070110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51723447-51729083 transcript_region:SL2.40ch11:51723447..51729083- functional_description:"Epsin (AHRD V1 *-*- D3BQV6_POLPA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00023720g0013.1 protein AED:0.41 eAED:0.41 QI:3|0.71|0.75|0.87|0.57|0.62|8|142|156; (*GB) gi|224070829|ref|XP_002303254.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9WTR7|SC11C_RAT (e_value=5e-52) Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3;; (*TAIR) AT1G52600.1 (e_value=3e-92) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180;; (*ITAG) Solyc12g006540.1.1 (e_value=5e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1050794-1055944 transcript_region:SL2.40ch12:1050794..1055944+ go_terms:GO:0016020 functional_description:"Signal peptidase complex catalytic subunit SEC11A (AHRD V1 ***- C1BS39_9MAXI); contains Interpro domain(s) IPR001733 Peptidase S26B, eukaryotic signal peptidase "; GO:0016020 NbS00023720g0006.1 protein AED:0.03 eAED:0.03 QI:121|0.85|0.62|1|1|1|8|432|313; (*GB) gi|225454487|ref|XP_002281065.1| (e_value=2e-131) PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera];; (*SWP) sp|Q9SH88|RRS1_ARATH (e_value=3e-117) Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2;; (*TAIR) AT2G37990.1 (e_value=2e-118) | Symbols: | ribosome biogenesis regulatory protein (RRS1) family protein | chr2:15900713-15903028 FORWARD LENGTH=318;; (*ITAG) Solyc12g006550.1.1 (e_value=2e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1059635-1063850 transcript_region:SL2.40ch12:1059635..1063850+ go_terms:GO:0005634 functional_description:"Ribosome biogenesis regulatory protein homolog (AHRD V1 ***- B5XEG4_SALSA); contains Interpro domain(s) IPR007023 Ribosomal biogenesis regulatory protein "; GO:0005634 NbS00023720g0012.1 protein AED:0.16 eAED:0.16 QI:41|0.82|0.83|1|0.76|0.72|18|195|743; (*GB) gi|350538549|ref|NP_001234604.1| (e_value=0.0) beta-amyrin synthase [Solanum lycopersicum];; (*SWP) sp|E7DN63|BAMS_SOLLC (e_value=0.0) Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1;; (*TAIR) AT1G78950.1 (e_value=0.0) | Symbols: | Terpenoid cyclases family protein | chr1:29684558-29688673 REVERSE LENGTH=759;; (*ITAG) Solyc12g006530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1041051-1049001 transcript_region:SL2.40ch12:1041051..1049001+ go_terms:GO:0016866,GO:0003824 functional_description:"Cycloartenol synthase (AHRD V1 ***- D7LA92_ARALY); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0016866,GO:0003824 NbS00013173g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|765; (*GB) gi|359473905|ref|XP_002271209.2| (e_value=1e-78) PREDICTED: uncharacterized protein LOC100255355 [Vitis vinifera];; (*TAIR) AT5G41790.1 (e_value=7e-44) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc12g056060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47378490-47381135 transcript_region:SL2.40ch12:47378490..47381135- functional_description:"Genomic DNA chromosome 5 TAC clone K16L22 (AHRD V1 *-*- Q9FJ36_ARATH)"; NbS00013173g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|83 NbS00013173g0004.1 protein AED:0.21 eAED:0.52 QI:0|0|0|1|0|0|2|0|63 NbS00005857g0003.1 protein AED:0.17 eAED:0.17 QI:229|1|1|1|0.91|0.84|13|300|423; (*GB) gi|255543008|ref|XP_002512567.1| (e_value=0.0) ATP-citrate synthase, putative [Ricinus communis];; (*SWP) sp|O80526|ACLA3_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1;; (*TAIR) AT1G09430.1 (e_value=0.0) | Symbols: ACLA-3 | ATP-citrate lyase A-3 | chr1:3042135-3044978 FORWARD LENGTH=424;; (*ITAG) Solyc01g101040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82660502-82665331 transcript_region:SL2.40ch01:82660502..82665331+ go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-3 (AHRD V1 **** D7KJQ3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00023469g0005.1 protein AED:0.21 eAED:0.27 QI:528|0.75|0.4|1|0.5|0.4|5|0|467; (*GB) gi|297740447|emb|CBI30629.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G28520.2 (e_value=3e-167) | Symbols: VOZ1 | vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486;; (*ITAG) Solyc02g077450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36962132-36966974 transcript_region:SL2.40ch02:36962132..36966974- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)"; GO:0016563 NbS00023469g0006.1 protein AED:0.13 eAED:0.13 QI:346|0.66|1|1|0|0.25|4|1902|55 NbS00019474g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.2|1|0.75|0.6|5|0|286; (*GB) gi|225458247|ref|XP_002281308.1| (e_value=8e-108) PREDICTED: putative pectinesterase 11 [Vitis vinifera];; (*SWP) sp|Q9SIJ9|PME11_ARATH (e_value=4e-97) Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1;; (*TAIR) AT2G21610.1 (e_value=3e-98) | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:9245161-9247025 REVERSE LENGTH=352;; (*ITAG) Solyc01g109740.2.1 (e_value=7e-153) genomic_reference:SL2.40ch01 gene_region:88376414-88378220 transcript_region:SL2.40ch01:88376414..88378220+ go_terms:GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 **** D7LBW7_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00019474g0006.1 protein AED:0.12 eAED:0.13 QI:3|0|0|1|0|0|2|0|214; (*GB) gi|225428446|ref|XP_002284067.1| (e_value=3e-75) PREDICTED: syntaxin-112-like [Vitis vinifera];; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=9e-49) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=7e-50) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc01g109750.2.1 (e_value=5e-108) genomic_reference:SL2.40ch01 gene_region:88378398-88379448 transcript_region:SL2.40ch01:88378398..88379448- go_terms:GO:0043495 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0043495 NbS00024285g0015.1 protein AED:0.33 eAED:0.33 QI:228|1|0.75|1|0.66|0.5|4|27|389; (*GB) gi|296089042|emb|CBI38745.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FMK9|PPA29_ARATH (e_value=3e-176) Probable inactive purple acid phosphatase 29 OS=Arabidopsis thaliana GN=PAP29 PE=2 SV=1;; (*TAIR) AT5G63140.1 (e_value=2e-177) | Symbols: ATPAP29, PAP29 | purple acid phosphatase 29 | chr5:25328237-25329616 FORWARD LENGTH=389;; (*ITAG) Solyc11g066290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49099350-49102726 transcript_region:SL2.40ch11:49099350..49102726- go_terms:GO:0009401,GO:0016787 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- C6I6S4_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 "; GO:0009401,GO:0016787 NbS00024285g0016.1 protein AED:0.25 eAED:0.25 QI:200|0.88|0.9|1|0.77|0.8|10|391|323; (*GB) gi|82621156|gb|ABB86266.1| (e_value=4e-178) putative RNA processing factor 1-like [Solanum tuberosum];; (*SWP) sp|Q9H9Y2|RPF1_HUMAN (e_value=8e-68) Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2;; (*TAIR) AT4G01560.1 (e_value=9e-137) | Symbols: MEE49 | Ribosomal RNA processing Brix domain protein | chr4:677266-679164 REVERSE LENGTH=343;; (*ITAG) Solyc11g066280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49092739-49098490 transcript_region:SL2.40ch11:49092739..49098490+ functional_description:"U3 small nucleolar ribonucleoprotein protein imp4 (AHRD V1 **-- Q17BF6_AEDAE); contains Interpro domain(s) IPR007109 Brix domain "; NbS00044300g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|306; (*GB) gi|359486639|ref|XP_002284011.2| (e_value=2e-133) PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Vitis vinifera];; (*SWP) sp|O80647|PP195_ARATH (e_value=2e-91) Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1;; (*TAIR) AT2G39620.1 (e_value=2e-92) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836;; (*ITAG) Solyc04g016540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010446g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|12003386|gb|AAG43550.1|AF211532_1 (e_value=1e-139) Avr9/Cf-9 rapidly elicited protein 132 [Nicotiana tabacum];; (*SWP) sp|P0C035|ATL60_ARATH (e_value=1e-33) RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1;; (*TAIR) AT1G53820.1 (e_value=8e-35) | Symbols: | RING/U-box superfamily protein | chr1:20091491-20092423 FORWARD LENGTH=310;; (*ITAG) Solyc03g123680.1.1 (e_value=1e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64506487-64507209 transcript_region:SL2.40ch03:64506487..64507209- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010446g0009.1 protein AED:0.28 eAED:0.48 QI:0|0|0|0.75|0.33|0.25|4|0|179; (*GB) gi|153799750|gb|ABS50606.1| (e_value=5e-30) cytochrome c biogenesis orf203 [Arabidopsis thaliana];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=1e-28) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=2e-32) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00060682g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|493; (*GB) gi|350536071|ref|NP_001234228.1| (e_value=0.0) salt responsive protein 2 [Solanum lycopersicum];; (*SWP) sp|B0BN95|HARB1_RAT (e_value=3e-21) Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1;; (*TAIR) AT5G12010.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc07g040960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00050887g0001.1 protein AED:0.24 eAED:0.25 QI:0|1|0|1|1|1|2|0|178; (*GB) gi|225458694|ref|XP_002284954.1| (e_value=3e-70) PREDICTED: uncharacterized protein LOC100257564 [Vitis vinifera];; (*TAIR) AT5G47830.1 (e_value=2e-54) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:19373013-19374300 REVERSE LENGTH=173;; (*ITAG) Solyc04g078600.2.1 (e_value=2e-84) genomic_reference:SL2.40ch04 gene_region:60872971-60876969 transcript_region:SL2.40ch04:60872971..60876969+ functional_description:"Genomic DNA chromosome 5 P1 clone MCA23 (AHRD V1 **-- Q9FIJ8_ARATH)"; NbS00010155g0011.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|2|594|129; (*GB) gi|76573351|gb|ABA46780.1| (e_value=3e-71) unknown [Solanum tuberosum];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=3e-64) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=2e-65) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc04g015370.2.1 (e_value=2e-76) genomic_reference:SL2.40ch04 gene_region:5576931-5582053 transcript_region:SL2.40ch04:5576931..5582053- go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00010155g0009.1 protein AED:0.42 eAED:0.44 QI:0|0.8|0.63|1|1|1|11|0|335; (*GB) gi|255638717|gb|ACU19663.1| (e_value=0.0) unknown [Glycine max];; (*SWP) sp|O04153|CALR3_ARATH (e_value=0.0) Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2;; (*TAIR) AT1G08450.1 (e_value=0.0) | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424;; (*ITAG) Solyc05g056230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64732387-64738654 transcript_region:SL2.40ch05:64732387..64738654- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00010155g0004.1 protein AED:0.53 eAED:0.70 QI:0|1|0|1|1|1|2|0|65 NbS00015501g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|225455718|ref|XP_002273196.1| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100259380 [Vitis vinifera];; (*TAIR) AT3G48800.1 (e_value=2e-18) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:18095825-18096661 REVERSE LENGTH=278;; (*ITAG) Solyc05g023820.2.1 (e_value=6e-21) genomic_reference:SL2.40ch05 gene_region:29363682-29365771 transcript_region:SL2.40ch05:29363682..29365771+ functional_description:"SAM domain family protein (AHRD V1 **-- B6TSE6_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00015501g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.83|1|1|1|6|582|351; (*GB) gi|255547083|ref|XP_002514599.1| (e_value=5e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G69030.1 (e_value=1e-76) | Symbols: | BSD domain-containing protein | chr1:25947429-25949262 REVERSE LENGTH=317;; (*ITAG) Solyc12g038630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:36089756-36097242 transcript_region:SL2.40ch12:36089756..36097242- functional_description:"BSD domain containing protein (AHRD V1 **-- B4FWY5_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00015501g0007.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|67; (*GB) gi|255547083|ref|XP_002514599.1| (e_value=1e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g038630.1.1 (e_value=5e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:36089756-36097242 transcript_region:SL2.40ch12:36089756..36097242- functional_description:"BSD domain containing protein (AHRD V1 **-- B4FWY5_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00011185g0006.1 protein AED:0.27 eAED:0.31 QI:138|0.8|0.63|1|0.5|0.54|11|0|433; (*GB) gi|2911280|gb|AAC04324.1| (e_value=0.0) PK12 protein kinase [Nicotiana tabacum];; (*SWP) sp|P51567|AFC2_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1;; (*TAIR) AT4G24740.1 (e_value=0.0) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427;; (*ITAG) Solyc05g013770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7077909-7082147 transcript_region:SL2.40ch05:7077909..7082147- go_terms:GO:0003713,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0003713,GO:0004674 NbS00030025g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|1|1|3|0|315; (*GB) gi|324388027|gb|ADY38789.1| (e_value=4e-99) DNA-binding protein [Coffea arabica];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=1e-30) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G14465.1 (e_value=5e-67) | Symbols: AHL20 | AT-hook motif nuclear-localized protein 20 | chr4:8320972-8321817 FORWARD LENGTH=281;; (*ITAG) Solyc11g006090.1.1 (e_value=1e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:876985-880355 transcript_region:SL2.40ch11:876985..880355+ functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00031824g0001.1 protein AED:0.20 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|500; (*GB) gi|224129542|ref|XP_002328742.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01240.1 (e_value=7e-77) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:517795-521972 REVERSE LENGTH=659;; (*ITAG) Solyc10g052600.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00031824g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.88|0.77|0.94|1|1|18|0|948; (*GB) gi|255556695|ref|XP_002519381.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT5G49760.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20216679-20221052 FORWARD LENGTH=953;; (*ITAG) Solyc01g102700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83194913-83202439 transcript_region:SL2.40ch01:83194913..83202439+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00010990g0006.1 protein AED:0.25 eAED:0.25 QI:117|0.92|1|1|1|1|14|187|393; (*GB) gi|25453062|sp|Q9FS88.1|IVD1_SOLTU (e_value=0.0) RecName: Full=Isovaleryl-CoA dehydrogenase 1, mitochondrial; Short=IVD 1; Flags: Precursor;; (*SWP) sp|Q9FS88|IVD1_SOLTU (e_value=0.0) Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1;; (*TAIR) AT3G45300.1 (e_value=0.0) | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydrogenase | chr3:16621659-16624848 REVERSE LENGTH=409;; (*ITAG) Solyc06g073560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41744990-41749088 transcript_region:SL2.40ch06:41744990..41749088- go_terms:GO:0008470 functional_description:"Isovaleryl-CoA dehydrogenase (AHRD V1 **** Q0MX57_BETVU); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0008470 NbS00010990g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.84|0.85|1|0.76|0.78|14|394|906; (*GB) gi|296083998|emb|CBI24386.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PKG0|LARP1_HUMAN (e_value=3e-64) La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2;; (*TAIR) AT5G21160.1 (e_value=7e-146) | Symbols: | LA RNA-binding protein | chr5:7199191-7203879 REVERSE LENGTH=826;; (*ITAG) Solyc06g073550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41732229-41744562 transcript_region:SL2.40ch06:41732229..41744562+ functional_description:"La related protein-like (AHRD V1 **-- Q5NBG8_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00037814g0001.1 protein AED:0.31 eAED:0.86 QI:0|-1|0|1|-1|1|1|0|168 NbS00037814g0003.1 protein AED:0.65 eAED:0.83 QI:0|0|0|0.5|0|0|2|0|74 NbS00009299g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|326; (*GB) gi|37572449|dbj|BAC98494.1| (e_value=0.0) AG-motif binding protein-4 [Nicotiana tabacum];; (*SWP) sp|Q9FH57|GATA5_ARATH (e_value=2e-60) GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1;; (*TAIR) AT5G66320.2 (e_value=2e-61) | Symbols: GATA5 | GATA transcription factor 5 | chr5:26496208-26497309 REVERSE LENGTH=339;; (*ITAG) Solyc01g110310.2.1 (e_value=6e-167) genomic_reference:SL2.40ch01 gene_region:88806958-88808504 transcript_region:SL2.40ch01:88806958..88808504+ go_terms:GO:0031013,GO:0030674 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0031013,GO:0030674 NbS00008616g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|77; (*GB) gi|113205445|gb|AAW28576.2| (e_value=2e-21) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc05g017870.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:18756676-18760244 transcript_region:SL2.40ch05:18756676..18760244- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00010224g0002.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|1|1|2|0|283; (*GB) gi|18417168|ref|NP_567804.1| (e_value=1e-37) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G28310.1 (e_value=3e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14017458-14018066 FORWARD LENGTH=202;; (*ITAG) Solyc10g008320.1.1 (e_value=3e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2464074-2464700 transcript_region:SL2.40ch10:2464074..2464700- functional_description:"Unknown Protein (AHRD V1)"; NbS00010224g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|225446374|ref|XP_002274155.1| (e_value=2e-60) PREDICTED: uncharacterized protein LOC100255813 [Vitis vinifera];; (*TAIR) AT1G53035.1 (e_value=6e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19761866-19762318 REVERSE LENGTH=150;; (*ITAG) Solyc07g053940.1.1 (e_value=5e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59672873-59673307 transcript_region:SL2.40ch07:59672873..59673307- functional_description:"Genomic DNA chromosome 3 TAC clone K7L4 (AHRD V1 ***- Q9LJR0_ARATH)"; NbS00008152g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|146|191; (*GB) gi|255558882|ref|XP_002520464.1| (e_value=2e-28) heat-shock protein, putative [Ricinus communis];; (*SWP) sp|P19243|HSP11_PEA (e_value=1e-28) 18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1;; (*TAIR) AT2G29500.1 (e_value=3e-25) | Symbols: | HSP20-like chaperones superfamily protein | chr2:12633279-12633740 REVERSE LENGTH=153;; (*ITAG) Solyc10g086680.1.1 (e_value=2e-62) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64777396-64778100 transcript_region:SL2.40ch10:64777396..64778100- functional_description:"class I heat shock protein (AHRD V1 *-*- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00008152g0011.1 protein AED:0.04 eAED:0.04 QI:312|0.66|0.75|1|1|0.75|4|229|387; (*GB) gi|225440538|ref|XP_002275792.1| (e_value=2e-62) PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera];; (*TAIR) AT3G54000.1 (e_value=2e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996757-19998197 FORWARD LENGTH=352;; (*ITAG) Solyc09g011690.2.1 (e_value=4e-126) genomic_reference:SL2.40ch09 gene_region:4952573-4954426 transcript_region:SL2.40ch09:4952573..4954426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008152g0008.1 protein AED:0.43 eAED:0.46 QI:754|0.66|0.71|0.85|0.33|0.28|7|0|79 NbS00008152g0010.1 protein AED:0.38 eAED:0.39 QI:90|0|0|1|0|0|2|0|236; (*GB) gi|225440550|ref|XP_002276167.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100244272 [Vitis vinifera];; (*TAIR) AT3G09250.1 (e_value=5e-89) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr3:2839080-2840294 FORWARD LENGTH=244;; (*ITAG) Solyc09g011730.2.1 (e_value=6e-118) genomic_reference:SL2.40ch09 gene_region:5012208-5015671 transcript_region:SL2.40ch09:5012208..5015671- functional_description:"3-dehydroquinate dehydratase (AHRD V1 *--- B5HIA9_STRPR)"; NbS00017518g0007.1 protein AED:0.02 eAED:0.02 QI:78|1|0.5|1|1|1|2|0|217; (*GB) gi|224120226|ref|XP_002318277.1| (e_value=5e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62280.1 (e_value=4e-55) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc03g083500.2.1 (e_value=1e-129) genomic_reference:SL2.40ch03 gene_region:46973344-46974202 transcript_region:SL2.40ch03:46973344..46974202+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00017518g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|274|681; (*GB) gi|225455531|ref|XP_002267632.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 [Vitis vinifera];; (*SWP) sp|Q8RY65|NIK2_ARATH (e_value=3e-64) Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1;; (*TAIR) AT5G51560.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20945807-20948613 FORWARD LENGTH=680;; (*ITAG) Solyc01g091230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76667116-76670365 transcript_region:SL2.40ch01:76667116..76670365+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00021508g0005.1 protein AED:0.29 eAED:0.50 QI:0|1|0.33|1|0.5|0.66|3|0|208; (*GB) gi|350536507|ref|NP_001233994.1| (e_value=4e-61) proline transporter 3 [Solanum lycopersicum];; (*TAIR) AT2G39890.2 (e_value=5e-56) | Symbols: PROT1, ATPROT1 | proline transporter 1 | chr2:16656022-16658202 FORWARD LENGTH=442;; (*ITAG) Solyc05g052830.2.1 (e_value=1e-64) genomic_reference:SL2.40ch05 gene_region:62143139-62149192 transcript_region:SL2.40ch05:62143139..62149192- go_terms:GO:0015193 functional_description:"Proline transporter 2 (AHRD V1 **** Q9XE49_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00028320g0003.1 protein AED:0.14 eAED:0.14 QI:39|1|1|1|1|1|4|500|197; (*GB) gi|359474284|ref|XP_003631430.1| (e_value=1e-61) PREDICTED: ycf49-like protein-like [Vitis vinifera];; (*SWP) sp|Q55720|YC49L_SYNY3 (e_value=7e-34) Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0608 PE=3 SV=1;; (*TAIR) AT4G22830.1 (e_value=1e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | chr4:11990296-11991325 REVERSE LENGTH=193;; (*ITAG) Solyc08g007580.2.1 (e_value=2e-96) genomic_reference:SL2.40ch08 gene_region:2125113-2129164 transcript_region:SL2.40ch08:2125113..2129164- functional_description:"Uncharacterized conserved membrane protein (AHRD V1 *--- A5GTT0_SYNR3); contains Interpro domain(s) IPR019634 Protein of unknown function DUF2499 "; NbS00000760g0022.1 protein AED:0.13 eAED:0.13 QI:782|1|1|1|0.71|0.62|8|336|355; (*GB) gi|225456390|ref|XP_002280389.1| (e_value=1e-77) PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera];; (*SWP) sp|Q8W475|SWI3A_ARATH (e_value=3e-49) SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1;; (*TAIR) AT2G47620.1 (e_value=2e-50) | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose nonfermenting 3A | chr2:19532034-19534251 FORWARD LENGTH=512;; (*ITAG) Solyc03g097450.2.1 (e_value=2e-162) genomic_reference:SL2.40ch03 gene_region:53219323-53230371 transcript_region:SL2.40ch03:53219323..53230371- go_terms:GO:0003677 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_HUMAN); contains Interpro domain(s) IPR007526 SWIRM "; GO:0003677 NbS00000760g0002.1 protein AED:0.15 eAED:0.15 QI:63|0.77|0.7|1|0.88|0.8|10|0|555; (*GB) gi|359495046|ref|XP_002265081.2| (e_value=7e-93) PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera];; (*SWP) sp|Q6DFF4|INT9_XENLA (e_value=8e-19) Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1;; (*TAIR) AT3G07530.1 (e_value=7e-78) | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | chr3:2400793-2404280 FORWARD LENGTH=699;; (*ITAG) Solyc03g097460.2.1 (e_value=3e-147) genomic_reference:SL2.40ch03 gene_region:53235916-53245340 transcript_region:SL2.40ch03:53235916..53245340- functional_description:"Integrator complex subunit 9 (AHRD V1 ***- B0WES8_CULQU)"; NbS00000760g0020.1 protein AED:0.26 eAED:0.26 QI:463|0.87|0.88|1|0.87|0.88|9|430|432; (*GB) gi|193290706|gb|ACF17661.1| (e_value=0.0) putative 3-oxoacyl-(acyl-carrier-protein) synthase III [Capsicum annuum];; (*SWP) sp|P49244|FABH1_CUPWR (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii GN=KAS3A PE=2 SV=2;; (*TAIR) AT1G62640.2 (e_value=0.0) | Symbols: KAS III | 3-ketoacyl-acyl carrier protein synthase III | chr1:23192502-23194737 FORWARD LENGTH=404;; (*ITAG) Solyc03g097470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53248143-53261349 transcript_region:SL2.40ch03:53248143..53261349- go_terms:GO:0008137 functional_description:"3-oxoacyl- (AHRD V1 ***- D5A3B9_SPIPL); contains Interpro domain(s) IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH) "; GO:0008137 NbS00000760g0023.1 protein AED:0.08 eAED:0.08 QI:154|0.75|1|1|1|1|5|229|308; (*GB) gi|15824408|gb|AAL09328.1|AF302806_1 (e_value=2e-126) steroleosin [Sesamum indicum];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=7e-21) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT5G50700.1 (e_value=8e-115) | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20623259-20624995 REVERSE LENGTH=349;; (*ITAG) Solyc03g097440.2.1 (e_value=5e-170) genomic_reference:SL2.40ch03 gene_region:53209998-53213148 transcript_region:SL2.40ch03:53209998..53213148+ go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00000760g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|225454733|ref|XP_002270915.1| (e_value=1e-120) PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Vitis vinifera];; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=4e-102) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=1e-102) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc03g097410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53185449-53186414 transcript_region:SL2.40ch03:53185449..53186414+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR008656 Inositol 1, 3, 4-trisphosphate 56-kinase "; GO:0004428 NbS00000760g0015.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|170; (*ITAG) Solyc03g097430.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53200335-53200982 transcript_region:SL2.40ch03:53200335..53200982+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000760g0006.1 protein AED:0.35 eAED:0.41 QI:0|0|0.5|1|0|0.5|2|383|74; (*GB) gi|356504256|ref|XP_003520913.1| (e_value=7e-34) PREDICTED: mitotic-spindle organizing protein 1B [Glycine max];; (*SWP) sp|Q9M0N8|MZT1B_ARATH (e_value=2e-30) Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=At4g09550 PE=1 SV=1;; (*TAIR) AT4G09550.1 (e_value=2e-31) | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein 1 | chr4:6039706-6039921 FORWARD LENGTH=71;; (*ITAG) Solyc03g097400.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53177036-53177212 transcript_region:SL2.40ch03:53177036..53177212+ go_terms:GO:0005515 functional_description:"Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1B (AHRD V1 ***- MZT1B_ARATH)"; GO:0005515 NbS00000760g0027.1 protein AED:0.34 eAED:0.42 QI:251|0|0.5|1|0|0|2|0|76 NbS00061720g0001.1 protein AED:0.13 eAED:0.13 QI:271|0.9|0.90|1|1|1|11|0|681; (*GB) gi|861147|emb|CAA56175.1| (e_value=0.0) K+ channel inward rectifying [Solanum tuberosum];; (*SWP) sp|Q39128|KAT1_ARATH (e_value=0.0) Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2;; (*TAIR) AT5G46240.1 (e_value=0.0) | Symbols: KAT1 | potassium channel in Arabidopsis thaliana 1 | chr5:18743652-18746561 REVERSE LENGTH=677;; (*ITAG) Solyc02g070530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34839156-34842287 transcript_region:SL2.40ch02:34839156..34842287- go_terms:GO:0042802 functional_description:"Potassium channel (AHRD V1 ***- O24382_SOLTU); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0042802 NbS00061720g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.6|1|1|1|5|0|576; (*GB) gi|225444543|ref|XP_002275664.1| (e_value=0.0) PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3-like [Vitis vinifera];; (*SWP) sp|Q93Y37|MNS3_ARATH (e_value=0.0) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 OS=Arabidopsis thaliana GN=MNS3 PE=2 SV=1;; (*TAIR) AT1G30000.1 (e_value=0.0) | Symbols: MNS3 | alpha-mannosidase 3 | chr1:10509532-10512320 REVERSE LENGTH=624;; (*ITAG) Solyc02g070520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34830173-34839202 transcript_region:SL2.40ch02:34830173..34839202+ go_terms:GO:0004571 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** B2VZK4_PYRTR); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571 NbS00005893g0013.1 protein AED:0.06 eAED:0.08 QI:87|0.85|0.8|1|0.71|0.6|15|636|634; (*GB) gi|359484098|ref|XP_002268907.2| (e_value=0.0) PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Vitis vinifera];; (*SWP) sp|Q8H0T9|KTNB1_ARATH (e_value=3e-139) Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3;; (*TAIR) AT5G23430.1 (e_value=2e-140) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:7894073-7899862 REVERSE LENGTH=837;; (*ITAG) Solyc02g021360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13222648-13241707 transcript_region:SL2.40ch02:13222648..13241707- go_terms:GO:0046982 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7K750_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0046982 NbS00005893g0014.1 protein AED:0.08 eAED:0.24 QI:0|0|0|1|0|0|5|0|280; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-17) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc03g122200.1.1 (e_value=8e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00054383g0008.1 protein AED:0.72 eAED:0.81 QI:0|0|0|0.66|1|1|3|0|67 NbS00054383g0007.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|0|0|3|0|239; (*GB) gi|147767977|emb|CAN60218.1| (e_value=2e-46) hypothetical protein VITISV_006612 [Vitis vinifera];; (*SWP) sp|P03010|TRAC9_MAIZE (e_value=3e-18) Putative AC9 transposase OS=Zea mays PE=4 SV=1;; (*TAIR) AT3G42170.1 (e_value=1e-25) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc10g007810.2.1 (e_value=8e-107) genomic_reference:SL2.40ch10 gene_region:2028853-2031189 transcript_region:SL2.40ch10:2028853..2031189- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00054383g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|3|0|163; (*GB) gi|255558708|ref|XP_002520378.1| (e_value=1e-61) Protein HVA22, putative [Ricinus communis];; (*SWP) sp|Q682H0|HA22F_ARATH (e_value=2e-51) HVA22-like protein f OS=Arabidopsis thaliana GN=HVA22F PE=2 SV=1;; (*TAIR) AT2G42820.1 (e_value=2e-52) | Symbols: HVA22F | HVA22-like protein F | chr2:17817460-17818301 REVERSE LENGTH=158;; (*ITAG) Solyc10g007820.2.1 (e_value=6e-82) genomic_reference:SL2.40ch10 gene_region:2035172-2037647 transcript_region:SL2.40ch10:2035172..2037647+ go_terms:GO:0031849,GO:0042802 functional_description:"Receptor expression enhancing protein 5 (AHRD V1 **-* Q5QGU0_MOUSE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0031849,GO:0042802 NbS00004193g0004.1 protein AED:0.39 eAED:0.45 QI:0|0|0|0.66|0.5|0.33|3|0|97 NbS00009193g0001.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|567; (*GB) gi|225431902|ref|XP_002276533.1| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q8VZF1|AEE7_ARATH (e_value=0.0) Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1;; (*TAIR) AT3G16910.1 (e_value=0.0) | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | chr3:5773231-5775411 REVERSE LENGTH=569;; (*ITAG) Solyc01g060180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62560881-62565105 transcript_region:SL2.40ch01:62560881..62565105- go_terms:GO:0008152 functional_description:"AMP-dependent synthetase and ligase (AHRD V1 ***- A1U2F4_MARAV); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00009193g0216.1 protein AED:0.04 eAED:0.06 QI:132|0.5|0.66|1|0.5|0.66|3|1103|93 NbS00009193g0222.1 protein AED:0.17 eAED:0.17 QI:36|1|1|1|1|1|7|435|173 NbS00009193g0219.1 protein AED:0.27 eAED:0.30 QI:20|0.66|0.38|0.92|0.91|0.76|13|0|949 NbS00009193g0220.1 protein AED:0.42 eAED:0.42 QI:361|0.5|0.33|0.66|1|1|3|0|71 NbS00009193g0223.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|0.66|3|0|192 NbS00009193g0214.1 protein AED:0.20 eAED:0.68 QI:0|0|0|1|0|0|2|0|87 NbS00019619g0003.1 protein AED:0.38 eAED:0.57 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|224126577|ref|XP_002329589.1| (e_value=1e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g077400.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:58438147-58439198 transcript_region:SL2.40ch08:58438147..58439198- go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- A7IZL0_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00040446g0001.1 protein AED:0.45 eAED:0.60 QI:0|0|0|1|0|0|3|0|79 NbS00030699g0003.1 protein AED:0.17 eAED:0.17 QI:677|1|0.66|1|1|1|3|0|347; (*GB) gi|255559953|ref|XP_002520995.1| (e_value=5e-145) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|O04336|WRK21_ARATH (e_value=3e-96) Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1;; (*TAIR) AT2G30590.1 (e_value=2e-97) | Symbols: WRKY21 | WRKY DNA-binding protein 21 | chr2:13033891-13035303 FORWARD LENGTH=380;; (*ITAG) Solyc09g066010.2.1 (e_value=1e-168) genomic_reference:SL2.40ch09 gene_region:59882612-59884663 transcript_region:SL2.40ch09:59882612..59884663+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 25 (AHRD V1 ***- C9DI14_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00010008g0106.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|316 NbS00000117g0017.1 protein AED:0.12 eAED:0.12 QI:12|0.66|0.75|1|0.66|0.75|4|0|308; (*GB) gi|225445501|ref|XP_002282138.1| (e_value=1e-170) PREDICTED: peroxidase 25 [Vitis vinifera];; (*SWP) sp|O80822|PER25_ARATH (e_value=5e-146) Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2;; (*TAIR) AT2G41480.1 (e_value=5e-147) | Symbols: | Peroxidase superfamily protein | chr2:17296986-17298729 REVERSE LENGTH=341;; (*ITAG) Solyc02g064970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30673468-30675393 transcript_region:SL2.40ch02:30673468..30675393+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43499_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00000117g0002.1 protein AED:0.22 eAED:0.22 QI:50|1|1|1|0.88|0.9|10|510|333; (*GB) gi|45238339|emb|CAD27342.1| (e_value=0.0) protein kinase CK2 alpha chain [Nicotiana tabacum];; (*SWP) sp|Q08467|CSK21_ARATH (e_value=0.0) Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3;; (*TAIR) AT5G67380.1 (e_value=0.0) | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | chr5:26881156-26883383 REVERSE LENGTH=409;; (*ITAG) Solyc03g044140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12161164-12172292 transcript_region:SL2.40ch03:12161164..12172292+ go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- Q8VXT1_BETVU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000117g0016.1 protein AED:0.24 eAED:0.27 QI:0|0.4|0.33|1|0.2|0.5|6|0|562; (*GB) gi|255584888|ref|XP_002533159.1| (e_value=0.0) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G37510.1 (e_value=0.0) | Symbols: | Ribonuclease III family protein | chr4:17626259-17628854 REVERSE LENGTH=537;; (*ITAG) Solyc10g080040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60770753-60775222 transcript_region:SL2.40ch10:60770753..60775222- go_terms:GO:0006396 functional_description:"Ribonuclease 3 (AHRD V1 *-*- C3BNS5_9BACI); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00035792g0014.1 protein AED:0.01 eAED:0.01 QI:29|1|1|1|1|1|2|239|569; (*GB) gi|302127802|emb|CBP07442.1| (e_value=0.0) sterol reductase [Solanum tuberosum];; (*SWP) sp|P93472|DIM_PEA (e_value=0.0) Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1;; (*TAIR) AT3G19820.3 (e_value=0.0) | Symbols: DWF1 | cell elongation protein / DWARF1 / DIMINUTO (DIM) | chr3:6879835-6881616 REVERSE LENGTH=561;; (*ITAG) Solyc02g069490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33935481-33937599 transcript_region:SL2.40ch02:33935481..33937599- go_terms:GO:0005516 functional_description:"FAD linked oxidase domain protein (AHRD V1 **-- D1VPW7_9ACTO); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0005516 NbS00035792g0016.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|224; (*GB) gi|30013659|gb|AAP03872.1| (e_value=3e-103) putative photosystem I subunit III precursor [Nicotiana tabacum];; (*SWP) sp|P46486|PSAF_FLATR (e_value=2e-90) Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1;; (*TAIR) AT1G31330.1 (e_value=3e-86) | Symbols: PSAF | photosystem I subunit F | chr1:11215011-11215939 REVERSE LENGTH=221;; (*ITAG) Solyc02g069450.2.1 (e_value=1e-107) genomic_reference:SL2.40ch02 gene_region:33915687-33919252 transcript_region:SL2.40ch02:33915687..33919252- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit III (AHRD V1 ***- Q9XQB4_PHAAU); contains Interpro domain(s) IPR003666 Photosystem I reaction centre protein PsaF, subunit III "; GO:0009538 NbS00035792g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|359495321|ref|XP_002271188.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266793 [Vitis vinifera];; (*TAIR) AT2G38970.1 (e_value=2e-134) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692;; (*ITAG) Solyc02g069470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33920445-33924829 transcript_region:SL2.40ch02:33920445..33924829- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00035792g0015.1 protein AED:0.35 eAED:0.36 QI:167|1|0.5|1|0|0.5|2|0|284; (*GB) gi|147776143|emb|CAN69721.1| (e_value=6e-61) hypothetical protein VITISV_014218 [Vitis vinifera];; (*TAIR) AT1G08050.1 (e_value=2e-45) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr1:2499088-2501311 REVERSE LENGTH=641;; (*ITAG) Solyc02g069470.2.1 (e_value=7e-117) genomic_reference:SL2.40ch02 gene_region:33920445-33924829 transcript_region:SL2.40ch02:33920445..33924829- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00035792g0017.1 protein AED:0.25 eAED:0.25 QI:60|1|0.5|1|1|1|2|0|166; (*GB) gi|357475151|ref|XP_003607861.1| (e_value=8e-72) LOB domain-containing protein [Medicago truncatula];; (*SWP) sp|Q9SHE9|LBD4_ARATH (e_value=7e-61) LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1;; (*TAIR) AT1G31320.1 (e_value=5e-62) | Symbols: LBD4 | LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172;; (*ITAG) Solyc02g069440.2.1 (e_value=6e-97) genomic_reference:SL2.40ch02 gene_region:33912638-33915345 transcript_region:SL2.40ch02:33912638..33915345+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00035792g0007.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|110; (*ITAG) Solyc08g069200.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55468697-55469532 transcript_region:SL2.40ch08:55468697..55469532- functional_description:"Unknown Protein (AHRD V1)"; NbS00016309g0007.1 protein AED:0.00 eAED:0.00 QI:241|1|0.5|1|1|1|2|0|462; (*GB) gi|225454605|ref|XP_002265200.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240796 [Vitis vinifera];; (*TAIR) AT1G64890.1 (e_value=2e-158) | Symbols: | Major facilitator superfamily protein | chr1:24109752-24111165 FORWARD LENGTH=442;; (*ITAG) Solyc03g097310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53083768-53086379 transcript_region:SL2.40ch03:53083768..53086379+ go_terms:GO:0005215 functional_description:"Transporter folate-biopterin transporter (AHRD V1 **** B6TI36_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00016309g0003.1 protein AED:0.32 eAED:0.32 QI:397|0.83|0.85|1|0.5|0.28|7|428|280; (*GB) gi|6682869|dbj|BAA88921.1| (e_value=1e-122) sigma factor [Nicotiana tabacum];; (*TAIR) AT1G64860.1 (e_value=7e-38) | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502;; (*ITAG) Solyc03g097320.2.1 (e_value=2e-102) genomic_reference:SL2.40ch03 gene_region:53086650-53091036 transcript_region:SL2.40ch03:53086650..53091036- go_terms:GO:0005515 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 ***- B0C890_ACAM1); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0005515 NbS00020328g0006.1 protein AED:0.29 eAED:0.30 QI:0|1|0.77|1|0.5|0.66|9|0|280; (*GB) gi|124484389|dbj|BAF46305.1| (e_value=5e-109) pectinacetylesterase family protein [Ipomoea nil];; (*TAIR) AT5G45280.2 (e_value=3e-103) | Symbols: | Pectinacetylesterase family protein | chr5:18346862-18349488 FORWARD LENGTH=391;; (*ITAG) Solyc08g075030.2.1 (e_value=4e-156) genomic_reference:SL2.40ch08 gene_region:56353726-56357296 transcript_region:SL2.40ch08:56353726..56357296- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00020328g0003.1 protein AED:0.42 eAED:0.48 QI:0|0|0|1|1|1|3|0|125; (*GB) gi|356531535|ref|XP_003534333.1| (e_value=2e-19) PREDICTED: protein notum homolog [Glycine max];; (*TAIR) AT4G19420.1 (e_value=8e-22) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075030.2.1 (e_value=5e-32) genomic_reference:SL2.40ch08 gene_region:56353726-56357296 transcript_region:SL2.40ch08:56353726..56357296- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00040693g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0|0.33|3|0|280; (*GB) gi|225446103|ref|XP_002270299.1| (e_value=2e-138) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Vitis vinifera];; (*SWP) sp|Q38907|XTH25_ARATH (e_value=1e-130) Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2;; (*TAIR) AT5G57550.1 (e_value=9e-132) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284;; (*ITAG) Solyc07g006870.2.1 (e_value=3e-157) genomic_reference:SL2.40ch07 gene_region:1722228-1724125 transcript_region:SL2.40ch07:1722228..1724125+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 8 (AHRD V1 **** C0IRI1_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00040693g0007.1 protein AED:0.03 eAED:0.03 QI:147|1|1|1|0.75|0.6|5|175|337; (*GB) gi|147854712|emb|CAN80250.1| (e_value=6e-132) hypothetical protein VITISV_036640 [Vitis vinifera];; (*SWP) sp|Q38907|XTH25_ARATH (e_value=1e-123) Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2;; (*TAIR) AT5G57550.1 (e_value=1e-124) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284;; (*ITAG) Solyc07g006850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1712267-1716538 transcript_region:SL2.40ch07:1712267..1716538+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 3 (AHRD V1 **** Q06BI4_CUCME); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00040693g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.33|3|135|274; (*GB) gi|318136930|gb|ADV41673.1| (e_value=3e-177) endo-xyloglucan transferase [Nicotiana tabacum];; (*SWP) sp|Q38857|XTH22_ARATH (e_value=4e-128) Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1;; (*TAIR) AT5G57560.1 (e_value=3e-129) | Symbols: TCH4, XTH22 | Xyloglucan endotransglucosylase/hydrolase family protein | chr5:23307296-23308235 REVERSE LENGTH=284;; (*ITAG) Solyc07g006860.2.1 (e_value=5e-163) genomic_reference:SL2.40ch07 gene_region:1717942-1719773 transcript_region:SL2.40ch07:1717942..1719773+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 3 (AHRD V1 **** Q06BI4_CUCME); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00040693g0008.1 protein AED:0.02 eAED:0.11 QI:0|0|0|1|1|1|3|0|441; (*GB) gi|224106187|ref|XP_002314077.1| (e_value=3e-57) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q53NF7|NAC71_ORYSJ (e_value=7e-53) NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1;; (*TAIR) AT1G61110.1 (e_value=3e-53) | Symbols: anac025, NAC025 | NAC domain containing protein 25 | chr1:22516730-22518055 FORWARD LENGTH=323;; (*ITAG) Solyc07g006840.1.1 (e_value=8e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1707455-1710527 transcript_region:SL2.40ch07:1707455..1710527+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9H255_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00040693g0015.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0.25|0.4|5|0|220; (*ITAG) Solyc01g073870.2.1 (e_value=1e-81) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00026254g0009.1 protein AED:0.11 eAED:0.11 QI:166|1|1|1|0.66|0.5|4|208|305; (*GB) gi|225465943|ref|XP_002272130.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase SINAT5 [Vitis vinifera];; (*SWP) sp|Q8S3N1|SINA5_ARATH (e_value=1e-166) E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2;; (*TAIR) AT3G61790.1 (e_value=4e-166) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc03g083270.2.1 (e_value=2e-168) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00026254g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|135; (*ITAG) Solyc02g069910.1.1 (e_value=5e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34275319-34275639 transcript_region:SL2.40ch02:34275319..34275639- functional_description:"Unknown Protein (AHRD V1)"; NbS00026254g0010.1 protein AED:0.37 eAED:0.41 QI:0|0.66|0.5|1|1|1|4|0|211; (*GB) gi|225444037|ref|XP_002282043.1| (e_value=8e-68) PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=7e-41) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1;; (*TAIR) AT1G30500.2 (e_value=6e-42) | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804736-10805896 REVERSE LENGTH=190;; (*ITAG) Solyc02g069860.2.1 (e_value=9e-94) genomic_reference:SL2.40ch02 gene_region:34253995-34260017 transcript_region:SL2.40ch02:34253995..34260017- go_terms:GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-7 (AHRD V1 ***- B6TY54_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0016566 NbS00002461g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|287; (*GB) gi|359483906|ref|XP_003633033.1| (e_value=4e-151) PREDICTED: uncharacterized protein LOC100853685 [Vitis vinifera];; (*TAIR) AT2G34620.1 (e_value=7e-131) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:14577196-14578203 FORWARD LENGTH=303;; (*ITAG) Solyc02g021430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13419141-13420061 transcript_region:SL2.40ch02:13419141..13420061+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00002461g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.93|1|1|0.93|0.93|16|437|484; (*GB) gi|297740758|emb|CBI30940.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93VD3|CIPKN_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1;; (*TAIR) AT1G30270.1 (e_value=0.0) | Symbols: CIPK23, SnRK3.23, ATCIPK23, LKS1 | CBL-interacting protein kinase 23 | chr1:10655270-10658524 FORWARD LENGTH=482;; (*ITAG) Solyc02g021440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13422223-13429172 transcript_region:SL2.40ch02:13422223..13429172- go_terms:GO:0004691 functional_description:"CBL-interacting protein kinase 04 (AHRD V1 **** A5BQ82_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00002461g0012.1 protein AED:0.05 eAED:0.05 QI:171|1|1|1|1|1|3|1727|396; (*GB) gi|225443944|ref|XP_002272106.1| (e_value=1e-63) PREDICTED: uncharacterized protein LOC100249766 [Vitis vinifera];; (*TAIR) AT1G30280.1 (e_value=4e-23) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:10662851-10664570 REVERSE LENGTH=455; NbS00002289g0001.1 protein AED:0.12 eAED:0.12 QI:811|1|0.5|1|0|0.5|2|0|183; (*GB) gi|225452536|ref|XP_002279925.1| (e_value=2e-111) PREDICTED: uncharacterized protein LOC100249281 isoform 1 [Vitis vinifera];; (*TAIR) AT5G40190.1 (e_value=3e-88) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr5:16069298-16069849 REVERSE LENGTH=183;; (*ITAG) Solyc02g081950.2.1 (e_value=7e-126) genomic_reference:SL2.40ch02 gene_region:40287312-40288823 transcript_region:SL2.40ch02:40287312..40288823+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7MJB3_ARALY); contains Interpro domain(s) IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase "; GO:0005516 NbS00002289g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|0.92|1|0.58|0.69|13|499|629; (*GB) gi|297738038|emb|CBI27239.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FYH7|VSR6_ARATH (e_value=0.0) Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3;; (*TAIR) AT1G30900.1 (e_value=0.0) | Symbols: VSR6, VSR3;3, BP80-3;3 | VACUOLAR SORTING RECEPTOR 6 | chr1:10997275-11000543 FORWARD LENGTH=631;; (*ITAG) Solyc02g081970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40296730-40302494 transcript_region:SL2.40ch02:40296730..40302494- go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor 7 (AHRD V1 **** B6UEQ5_MAIZE); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005515,GO:0009940 NbS00021219g0005.1 protein AED:0.17 eAED:0.17 QI:1537|1|1|1|0.8|0.83|6|0|189; (*GB) gi|225449044|ref|XP_002274159.1| (e_value=1e-63) PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera];; (*TAIR) AT5G20660.2 (e_value=3e-53) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:6989708-6990947 FORWARD LENGTH=301;; (*ITAG) Solyc04g025260.2.1 (e_value=2e-93) genomic_reference:SL2.40ch04 gene_region:18443059-18472464 transcript_region:SL2.40ch04:18443059..18472464+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_HUMAN); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00046352g0004.1 protein AED:0.35 eAED:0.73 QI:0|0|0|1|1|0.5|2|0|108; (*GB) gi|83283989|gb|ABC01902.1| (e_value=4e-19) putative 60S ribosomal protein L7-like protein [Solanum tuberosum];; (*TAIR) AT1G80750.1 (e_value=1e-13) | Symbols: | Ribosomal protein L30/L7 family protein | chr1:30349052-30350434 FORWARD LENGTH=247;; (*ITAG) Solyc03g117060.2.1 (e_value=2e-24) genomic_reference:SL2.40ch03 gene_region:60374016-60378796 transcript_region:SL2.40ch03:60374016..60378796- go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0042803 NbS00033065g0001.1 protein AED:0.13 eAED:0.13 QI:144|0.44|0.5|0.9|1|1|10|0|431; (*GB) gi|359493891|ref|XP_003634688.1| (e_value=6e-98) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FL69|AGD5_ARATH (e_value=2e-61) Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1;; (*TAIR) AT5G54310.1 (e_value=1e-62) | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483;; (*ITAG) Solyc10g006850.2.1 (e_value=9e-152) genomic_reference:SL2.40ch10 gene_region:1283178-1290235 transcript_region:SL2.40ch10:1283178..1290235- go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00033065g0008.1 protein AED:0.06 eAED:0.38 QI:0|0.5|0|1|0|0.66|3|0|100; (*GB) gi|224076806|ref|XP_002305001.1| (e_value=8e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|O65420|VAL3_ARATH (e_value=3e-30) B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=2 SV=3;; (*TAIR) AT4G21550.1 (e_value=2e-31) | Symbols: VAL3 | VP1/ABI3-like 3 | chr4:11463104-11468486 FORWARD LENGTH=713;; (*ITAG) Solyc02g079020.2.1 (e_value=1e-32) genomic_reference:SL2.40ch02 gene_region:38216434-38227691 transcript_region:SL2.40ch02:38216434..38227691- go_terms:GO:0005515,GO:0003700,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0003700,GO:0016564 NbS00049291g0004.1 protein AED:0.22 eAED:0.23 QI:6|0.8|0.66|1|0.8|0.66|6|0|179; (*GB) gi|255561090|ref|XP_002521557.1| (e_value=2e-103) inorganic pyrophosphatase, putative [Ricinus communis];; (*SWP) sp|Q0DYB1|IPYR_ORYSJ (e_value=2e-96) Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1;; (*TAIR) AT3G53620.1 (e_value=2e-98) | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216;; (*ITAG) Solyc02g085050.2.1 (e_value=2e-120) genomic_reference:SL2.40ch02 gene_region:42649932-42653288 transcript_region:SL2.40ch02:42649932..42653288- go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q8LA73_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00031332g0013.1 protein AED:0.26 eAED:0.26 QI:375|0.90|0.91|1|0.81|0.66|12|356|342; (*GB) gi|388492402|gb|AFK34267.1| (e_value=2e-179) unknown [Medicago truncatula];; (*SWP) sp|Q94A05|B3GTA_ARATH (e_value=1e-170) Probable beta-1,3-galactosyltransferase 10 OS=Arabidopsis thaliana GN=B3GALT10 PE=2 SV=1;; (*TAIR) AT4G32120.1 (e_value=8e-172) | Symbols: | Galactosyltransferase family protein | chr4:15517230-15519687 REVERSE LENGTH=345;; (*ITAG) Solyc08g029170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22869439-22877497 transcript_region:SL2.40ch08:22869439..22877497- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00031332g0010.1 protein AED:0.36 eAED:0.38 QI:0|0.5|0.44|0.88|0.37|0.55|9|476|338; (*GB) gi|225430458|ref|XP_002285487.1| (e_value=1e-75) PREDICTED: UPF0480 protein At4g32130 [Vitis vinifera];; (*SWP) sp|Q8VY97|Y4213_ARATH (e_value=3e-67) UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1;; (*TAIR) AT2G25310.1 (e_value=3e-70) | Symbols: | Protein of unknown function (DUF2012) | chr2:10777436-10779123 REVERSE LENGTH=210;; (*ITAG) Solyc08g041980.2.1 (e_value=2e-91) genomic_reference:SL2.40ch08 gene_region:28490019-28503056 transcript_region:SL2.40ch08:28490019..28503056+ go_terms:GO:0017076,GO:0003779 functional_description:"C15orf24 homolog (AHRD V1 ***- C1BJZ2_OSMMO); contains Interpro domain(s) IPR019008 Protein of unknown function DUF2012 "; GO:0017076,GO:0003779 NbS00031332g0114.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|79 NbS00031332g0113.1 protein AED:0.31 eAED:0.42 QI:0|0|0|1|0|0.5|4|0|173 NbS00031332g0104.1 protein AED:0.25 eAED:0.25 QI:715|0.90|0.83|0.91|0.81|0.66|12|0|345 NbS00057122g0004.1 protein AED:0.08 eAED:0.10 QI:0|0|0|0.6|0|0.4|5|0|283; (*GB) gi|225444635|ref|XP_002277560.1| (e_value=2e-117) PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=2e-101) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=1e-102) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g042430.1.1 (e_value=2e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:52901895-52904375 transcript_region:SL2.40ch07:52901895..52904375+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase (AHRD V1 **** C1GPZ2_PARBA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00058323g0008.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|163; (*GB) gi|377656755|gb|AFB73931.1| (e_value=6e-82) LAT52-like protein [Lycium barbarum];; (*SWP) sp|P13447|LAT52_SOLLC (e_value=2e-82) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=5e-37) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc12g014240.1.1 (e_value=3e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5066635-5068047 transcript_region:SL2.40ch12:5066635..5068047- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00058323g0007.1 protein AED:0.01 eAED:0.01 QI:78|1|1|1|1|1|4|344|443; (*GB) gi|225442233|ref|XP_002278228.1| (e_value=1e-147) PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis vinifera];; (*SWP) sp|Q54FE8|RPA49_DICDI (e_value=4e-13) DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium discoideum GN=polr1e PE=3 SV=1;; (*TAIR) AT3G13940.1 (e_value=3e-101) | Symbols: | DNA binding;DNA-directed RNA polymerases | chr3:4600647-4602412 REVERSE LENGTH=442;; (*ITAG) Solyc06g053330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32566171-32572561 transcript_region:SL2.40ch06:32566171..32572561- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase I subunit rpa49 (AHRD V1 *-*- RPA49_DICDI); contains Interpro domain(s) IPR009668 RNA polymerase I associated factor, A49-like "; GO:0005634 NbS00058323g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.71|1|1|1|7|755|686; (*GB) gi|356546820|ref|XP_003541820.1| (e_value=0.0) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max];; (*SWP) sp|Q9MAH1|TTL1_ARATH (e_value=0.0) TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1;; (*TAIR) AT1G53300.1 (e_value=0.0) | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like 1 | chr1:19879726-19882375 FORWARD LENGTH=699;; (*ITAG) Solyc07g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62483556-62487561 transcript_region:SL2.40ch07:62483556..62487561- go_terms:GO:0005488,GO:0045454 functional_description:"DnaJ homolog subfamily C member 7 (AHRD V1 *--- B5X1N5_SALSA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005488,GO:0045454 NbS00001793g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.33|1|0.4|0.5|6|0|812; (*GB) gi|224122822|ref|XP_002330372.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc04g077360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59879181-59882240 transcript_region:SL2.40ch04:59879181..59882240+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00001793g0010.1 protein AED:0.08 eAED:0.08 QI:975|0.8|0.66|1|0.6|0.5|6|0|795; (*GB) gi|224122858|ref|XP_002330381.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc04g077370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59885297-59888499 transcript_region:SL2.40ch04:59885297..59888499- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00001793g0012.1 protein AED:0.36 eAED:0.84 QI:32|0|0.33|1|0|0|3|0|72 NbS00003313g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0|0.75|0|0.25|4|0|141; (*GB) gi|357446033|ref|XP_003593294.1| (e_value=3e-34) MADS-box family transcription factor [Medicago truncatula];; (*SWP) sp|Q9SI38|ANR1_ARATH (e_value=3e-32) MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1;; (*TAIR) AT2G14210.1 (e_value=2e-33) | Symbols: ANR1, AGL44 | AGAMOUS-like 44 | chr2:6018841-6023585 FORWARD LENGTH=234;; (*ITAG) Solyc02g091550.1.1 (e_value=6e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00023191g0010.1 protein AED:0.16 eAED:0.16 QI:128|1|1|1|0.5|1|3|163|249; (*GB) gi|77999287|gb|ABB16990.1| (e_value=9e-160) proteasome-like protein alpha subunit [Solanum tuberosum];; (*SWP) sp|O24030|PSA7_SOLLC (e_value=2e-160) Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1;; (*TAIR) AT3G51260.1 (e_value=1e-152) | Symbols: PAD1 | 20S proteasome alpha subunit PAD1 | chr3:19031086-19032746 FORWARD LENGTH=250;; (*ITAG) Solyc01g111450.2.1 (e_value=2e-162) genomic_reference:SL2.40ch01 gene_region:89446679-89449724 transcript_region:SL2.40ch01:89446679..89449724+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT8_SOLTU); contains Interpro domain(s) IPR000426 Proteasome, alpha-subunit, conserved site "; GO:0019773,GO:0005839 NbS00023191g0013.1 protein AED:0.38 eAED:0.40 QI:231|0.5|0.6|1|0.25|0.2|5|183|134; (*GB) gi|388490518|gb|AFK33325.1| (e_value=1e-41) unknown [Lotus japonicus];; (*SWP) sp|Q9LIQ6|ING1_ARATH (e_value=3e-39) PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1;; (*TAIR) AT3G24010.1 (e_value=3e-40) | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger superfamily protein | chr3:8676120-8678186 REVERSE LENGTH=234;; (*ITAG) Solyc09g091190.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:65856500-65861321 transcript_region:SL2.40ch09:65856500..65861321- go_terms:GO:0003713 functional_description:"Inhibitor of growth protein 5 (AHRD V1 *-*- B6T7N2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003713 NbS00051872g0005.1 protein AED:0.16 eAED:0.16 QI:243|1|1|1|0.83|0.71|7|384|690; (*GB) gi|297736602|emb|CBI25473.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q09690|POM1_SCHPO (e_value=2e-55) Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pom1 PE=1 SV=1;; (*TAIR) AT2G40120.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:16755137-16757258 REVERSE LENGTH=570;; (*ITAG) Solyc06g051510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31468396-31473115 transcript_region:SL2.40ch06:31468396..31473115+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00034960g0005.1 protein AED:0.13 eAED:0.13 QI:35|1|1|1|1|1|3|53|207; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=1e-32) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=2e-22) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=2e-23) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=3e-55) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00034960g0002.1 protein AED:0.09 eAED:0.13 QI:0|0.75|0.6|1|1|1|5|0|397; (*GB) gi|356514292|ref|XP_003525840.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100794824 [Glycine max];; (*SWP) sp|F4JMI5|GUX7_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana GN=PGSIP7 PE=3 SV=1;; (*TAIR) AT4G16600.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr4:9350039-9352707 FORWARD LENGTH=494;; (*ITAG) Solyc06g060710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35118699-35123403 transcript_region:SL2.40ch06:35118699..35123403+ go_terms:GO:0016758 functional_description:"Glycogenin 2 (AHRD V1 *--- Q1ZYL7_HUMAN); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00034960g0006.1 protein AED:0.74 eAED:0.80 QI:3|0|0|1|0|0|2|0|74; (*GB) gi|224074153|ref|XP_002304276.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=9e-21) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=7e-22) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=4e-27) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00028693g0006.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0|0|3|0|367; (*GB) gi|225443478|ref|XP_002270076.1| (e_value=2e-158) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=1e-19) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT1G32910.1 (e_value=4e-134) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:11925426-11926908 FORWARD LENGTH=464;; (*ITAG) Solyc07g014580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4893282-4896266 transcript_region:SL2.40ch07:4893282..4896266- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (AHRD V1 **-* D1GJ94_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00003750g0004.1 protein AED:0.15 eAED:0.16 QI:0|1|1|1|1|1|8|0|553; (*GB) gi|225461612|ref|XP_002282987.1| (e_value=0.0) PREDICTED: uncharacterized protein ycf45 [Vitis vinifera];; (*SWP) sp|P51281|YCF45_PORPU (e_value=3e-132) Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1;; (*TAIR) AT1G73170.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27511722-27514783 REVERSE LENGTH=666;; (*ITAG) Solyc12g014150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4979762-4989302 transcript_region:SL2.40ch12:4979762..4989302+ go_terms:GO:0005524,GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- C7QND6_CYAP0); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00022319g0007.1 protein AED:0.26 eAED:0.26 QI:70|0.6|0.72|0.90|0.5|0.72|11|555|184; (*GB) gi|255582393|ref|XP_002531985.1| (e_value=6e-43) Ubiquitin ligase protein FANCL, putative [Ricinus communis];; (*SWP) sp|Q9CR14|FANCL_MOUSE (e_value=3e-15) E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1;; (*TAIR) AT5G65740.2 (e_value=4e-41) | Symbols: | zinc ion binding | chr5:26301702-26303422 REVERSE LENGTH=300;; (*ITAG) Solyc03g043870.2.1 (e_value=2e-71) genomic_reference:SL2.40ch03 gene_region:11501199-11505163 transcript_region:SL2.40ch03:11501199..11505163- go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin ligase protein FANCL (AHRD V1 **-* B6T4M8_MAIZE); contains Interpro domain(s) IPR019162 Fanconi anemia complex, subunit FancL, WD-repeat region "; GO:0005515,GO:0004842 NbS00022319g0010.1 protein AED:0.18 eAED:0.18 QI:182|1|1|1|0.66|0.75|4|161|99; (*GB) gi|351721032|ref|NP_001236940.1| (e_value=2e-33) uncharacterized protein LOC100527245 [Glycine max];; (*SWP) sp|Q9T070|COX6A_ARATH (e_value=2e-29) Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1;; (*TAIR) AT4G37830.1 (e_value=1e-30) | Symbols: | cytochrome c oxidase-related | chr4:17787672-17788762 REVERSE LENGTH=102;; (*ITAG) Solyc02g091880.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:47688583-47691682 transcript_region:SL2.40ch02:47688583..47691682+ go_terms:GO:0030234,GO:0004129 functional_description:"Cytochrome c oxidase subunit VIa family protein expressed (AHRD V1 **** Q7XZW4_ORYSJ); contains Interpro domain(s) IPR001349 Cytochrome c oxidase, subunit VIa "; GO:0030234,GO:0004129 NbS00058411g0004.1 protein AED:0.09 eAED:0.14 QI:0|0.5|0.33|1|0.5|0.66|3|0|280; (*GB) gi|224106830|ref|XP_002314299.1| (e_value=3e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=3e-60) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=2e-64) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc06g074910.2.1 (e_value=1e-92) genomic_reference:SL2.40ch06 gene_region:42804036-42806196 transcript_region:SL2.40ch06:42804036..42806196+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00060191g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|330318678|gb|AEC10999.1| (e_value=1e-13) hypothetical protein [Camellia sinensis];; (*ITAG) Solyc10g084510.1.1 (e_value=5e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63334491-63334850 transcript_region:SL2.40ch10:63334491..63334850- functional_description:"Unknown Protein (AHRD V1)"; NbS00046303g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.4|1|0.75|0.4|5|0|673; (*GB) gi|225464023|ref|XP_002265454.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis vinifera];; (*SWP) sp|Q9NW08|RPC2_HUMAN (e_value=0.0) DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2;; (*TAIR) AT5G45140.1 (e_value=0.0) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00046303g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|1|1|2|0|238; (*GB) gi|296087813|emb|CBI35069.3| (e_value=1e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|P22276|RPC2_YEAST (e_value=5e-64) DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2;; (*TAIR) AT5G45140.1 (e_value=3e-85) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=7e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00000983g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|224105539|ref|XP_002313848.1| (e_value=4e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQE6|CML1_ARATH (e_value=1e-31) Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1;; (*TAIR) AT2G15680.1 (e_value=8e-33) | Symbols: | Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187;; (*ITAG) Solyc01g108190.2.1 (e_value=4e-55) genomic_reference:SL2.40ch01 gene_region:87315276-87316549 transcript_region:SL2.40ch01:87315276..87316549- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00001146g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|427; (*GB) gi|224143157|ref|XP_002324864.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LF20|CAP2_ARATH (e_value=8e-173) Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2;; (*TAIR) AT2G25430.1 (e_value=6e-174) | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr2:10822716-10824677 FORWARD LENGTH=653;; (*ITAG) Solyc08g059660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:41665374-41667284 transcript_region:SL2.40ch08:41665374..41667284- go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00001146g0001.1 protein AED:0.39 eAED:0.40 QI:227|1|0.5|1|0|0|2|0|106; (*GB) gi|224092494|ref|XP_002309633.1| (e_value=2e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LF20|CAP2_ARATH (e_value=1e-51) Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2;; (*TAIR) AT2G25430.1 (e_value=1e-52) | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr2:10822716-10824677 FORWARD LENGTH=653;; (*ITAG) Solyc08g059660.1.1 (e_value=3e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:41665374-41667284 transcript_region:SL2.40ch08:41665374..41667284- go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00001146g0002.1 protein AED:0.40 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|224092494|ref|XP_002309633.1| (e_value=1e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LF20|CAP2_ARATH (e_value=6e-37) Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2;; (*TAIR) AT2G25430.1 (e_value=4e-38) | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr2:10822716-10824677 FORWARD LENGTH=653;; (*ITAG) Solyc06g011450.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:7405375-7407219 transcript_region:SL2.40ch06:7405375..7407219+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00026567g0008.1 protein AED:0.41 eAED:0.96 QI:0|0|0|0.8|1|1|5|0|367 NbS00026567g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|184; (*GB) gi|388252717|gb|AFK24441.1| (e_value=6e-54) DREB2 [Coffea arabica];; (*SWP) sp|P61827|DRE2G_ARATH (e_value=9e-43) Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1;; (*TAIR) AT5G18450.1 (e_value=7e-44) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:6116097-6117020 REVERSE LENGTH=307;; (*ITAG) Solyc04g050750.1.1 (e_value=1e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:47337687-47338172 transcript_region:SL2.40ch04:47337687..47338172- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00028977g0001.1 protein AED:0.21 eAED:0.21 QI:127|1|1|1|0.87|0.88|9|255|297; (*GB) gi|297734962|emb|CBI17196.3| (e_value=3e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G20070.2 (e_value=5e-48) | Symbols: TTN9 | titan9 | chr3:7004950-7006625 REVERSE LENGTH=282;; (*ITAG) Solyc02g086250.2.1 (e_value=1e-141) genomic_reference:SL2.40ch02 gene_region:43545452-43550151 transcript_region:SL2.40ch02:43545452..43550151- functional_description:"Genomic DNA chromosome 3 P1 clone MAL21 (AHRD V1 ***- Q9LJZ4_ARATH)"; NbS00028977g0006.1 protein AED:0.25 eAED:0.25 QI:134|1|1|1|1|1|5|428|181; (*GB) gi|10799832|emb|CAC12883.1| (e_value=8e-121) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42795|RL111_ARATH (e_value=6e-119) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2;; (*TAIR) AT2G42740.1 (e_value=5e-120) | Symbols: RPL16A | ribosomal protein large subunit 16A | chr2:17791794-17792946 FORWARD LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=6e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00002037g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|225449204|ref|XP_002276050.1| (e_value=0.0) PREDICTED: uncharacterized acetyltransferase At3g50280-like [Vitis vinifera];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=5e-61) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT2G39980.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16688437-16689885 REVERSE LENGTH=482;; (*ITAG) Solyc05g052680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62040079-62041452 transcript_region:SL2.40ch05:62040079..62041452- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00013575g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|293; (*GB) gi|255548986|ref|XP_002515549.1| (e_value=2e-105) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G28830.1 (e_value=3e-11) | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12367001-12370608 REVERSE LENGTH=962;; (*ITAG) Solyc08g067170.1.1 (e_value=1e-146) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:53343803-53344735 transcript_region:SL2.40ch08:53343803..53344735+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 11 (AHRD V1 **-- PUB11_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00013575g0004.1 protein AED:0.63 eAED:0.69 QI:0|0.33|0.5|0.75|0.33|0.5|4|0|90; (*GB) gi|388512435|gb|AFK44279.1| (e_value=3e-18) unknown [Lotus japonicus];; (*SWP) sp|Q9LW15|CX5B1_ARATH (e_value=7e-17) Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana GN=COX5B-1 PE=2 SV=1;; (*TAIR) AT3G15640.1 (e_value=5e-18) | Symbols: | Rubredoxin-like superfamily protein | chr3:5299273-5301371 FORWARD LENGTH=176;; (*ITAG) Solyc06g067940.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:38499801-38503089 transcript_region:SL2.40ch06:38499801..38503089+ go_terms:GO:0050897,GO:0008270 functional_description:"Cytochrome c oxidase subunit Vb (AHRD V1 ***- Q0KKQ8_PEA); contains Interpro domain(s) IPR002124 Cytochrome c oxidase, subunit Vb "; GO:0050897,GO:0008270 NbS00009934g0010.1 protein AED:0.17 eAED:0.17 QI:15|0.66|0.71|0.85|1|1|7|406|641; (*GB) gi|45935151|gb|AAS79609.1| (e_value=0.0) putative neutral invertase [Ipomoea trifida];; (*TAIR) AT5G22510.1 (e_value=0.0) | Symbols: INV-E, At-A/N-InvE | alkaline/neutral invertase | chr5:7474974-7477479 REVERSE LENGTH=617;; (*ITAG) Solyc11g067050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49887741-49890853 transcript_region:SL2.40ch11:49887741..49890853+ go_terms:GO:0003824 functional_description:"Neutral invertase (AHRD V1 ***- Q8L6W3_BETVU); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0003824 NbS00009934g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.57|1|0.16|0.28|7|0|313; (*GB) gi|359484359|ref|XP_002280934.2| (e_value=7e-109) PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera];; (*SWP) sp|B3CLY6|TILS_WOLPP (e_value=2e-22) tRNA(Ile)-lysidine synthase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=tilS PE=3 SV=1;; (*TAIR) AT3G24560.2 (e_value=6e-93) | Symbols: RSY3 | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:8963788-8966494 FORWARD LENGTH=660;; (*ITAG) Solyc11g067040.1.1 (e_value=4e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49882850-49886383 transcript_region:SL2.40ch11:49882850..49886383- go_terms:GO:0005737 functional_description:"tRNA(Ile)-lysidine synthase (AHRD V1 *-*- A4YMG0_BRASO); contains Interpro domain(s) IPR012795 Lysidine-tRNA(Ile) synthetase, N-terminal "; GO:0005737 NbS00009934g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.66|0.83|0.4|0.16|6|650|278; (*GB) gi|225436307|ref|XP_002266468.1| (e_value=2e-106) PREDICTED: putative low molecular weight protein-tyrosine-phosphatase slr0328-like [Vitis vinifera];; (*SWP) sp|Q55535|Y328_SYNY3 (e_value=3e-43) Putative low molecular weight protein-tyrosine-phosphatase slr0328 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0328 PE=3 SV=1;; (*TAIR) AT3G44620.1 (e_value=9e-96) | Symbols: | protein tyrosine phosphatases;protein tyrosine phosphatases | chr3:16193858-16195422 FORWARD LENGTH=239;; (*ITAG) Solyc11g067060.1.1 (e_value=1e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49891569-49894730 transcript_region:SL2.40ch11:49891569..49894730- go_terms:GO:0006470 functional_description:"Low molecular weight protein-tyrosine-phosphatase slr0328 (AHRD V1 ***- B6TIW5_MAIZE); contains Interpro domain(s) IPR000106 Protein-tyrosine phosphatase/arsenate reductase "; GO:0006470 NbS00062219g0004.1 protein AED:0.20 eAED:0.20 QI:12|1|1|1|1|1|2|10|113; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=4e-36) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=1e-29) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=4e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00005784g0004.1 protein AED:0.26 eAED:0.26 QI:2987|0.96|0.89|1|0.62|0.53|28|0|706; (*GB) gi|255562613|ref|XP_002522312.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT3G50590.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00005784g0002.1 protein AED:0.13 eAED:0.13 QI:225|0.5|0.8|1|0.25|0.4|5|735|391; (*GB) gi|359497319|ref|XP_002268917.2| (e_value=3e-71) PREDICTED: uncharacterized protein LOC100256691, partial [Vitis vinifera];; (*TAIR) AT4G37080.3 (e_value=7e-50) | Symbols: | Protein of unknown function, DUF547 | chr4:17473719-17476716 FORWARD LENGTH=610;; (*ITAG) Solyc02g090580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46702603-46706286 transcript_region:SL2.40ch02:46702603..46706286- functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00058777g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|645|199; (*GB) gi|319993062|dbj|BAJ61956.1| (e_value=3e-143) Sec14 like protein [Nicotiana tabacum];; (*SWP) sp|Q7JUR6|GDAP2_DROME (e_value=7e-16) Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1;; (*TAIR) AT4G35750.1 (e_value=3e-120) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr4:16940865-16941674 REVERSE LENGTH=202;; (*ITAG) Solyc02g083250.2.1 (e_value=1e-136) genomic_reference:SL2.40ch02 gene_region:41284337-41285558 transcript_region:SL2.40ch02:41284337..41285558- functional_description:"Cellular retinaldehyde-binding/triple function C-terminal (AHRD V1 **-- B6SN40_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00026647g0006.1 protein AED:0.07 eAED:0.07 QI:55|1|1|1|0.83|0.85|7|318|279; (*GB) gi|255554799|ref|XP_002518437.1| (e_value=1e-140) proline synthetase associated protein, putative [Ricinus communis];; (*SWP) sp|O94903|PROSC_HUMAN (e_value=1e-73) Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1;; (*TAIR) AT1G11930.2 (e_value=2e-141) | Symbols: | Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr1:4028783-4030298 FORWARD LENGTH=255;; (*ITAG) Solyc02g080940.2.1 (e_value=5e-161) genomic_reference:SL2.40ch02 gene_region:39605676-39610019 transcript_region:SL2.40ch02:39605676..39610019+ go_terms:GO:0042802,GO:0030170 functional_description:"Proline synthetase co-transcribed bacterial homolog protein (AHRD V1 **-- B5X4B5_SALSA); contains Interpro domain(s) IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "; GO:0042802,GO:0030170 NbS00026647g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|305; (*GB) gi|359483391|ref|XP_003632946.1| (e_value=2e-100) PREDICTED: pentatricopeptide repeat-containing protein At4g04370-like [Vitis vinifera];; (*SWP) sp|Q9XE98|PP303_ARATH (e_value=3e-72) Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1;; (*TAIR) AT4G04370.1 (e_value=2e-73) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2134060-2136249 REVERSE LENGTH=729;; (*ITAG) Solyc02g080950.1.1 (e_value=2e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39610383-39612644 transcript_region:SL2.40ch02:39610383..39612644+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00007567g0017.1 protein AED:0.01 eAED:0.01 QI:250|1|1|1|1|1|4|323|471; (*GB) gi|225425158|ref|XP_002263613.1| (e_value=4e-165) PREDICTED: zinc finger protein CONSTANS-LIKE 14-like [Vitis vinifera];; (*SWP) sp|O22800|COL14_ARATH (e_value=1e-95) Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2;; (*TAIR) AT2G33500.1 (e_value=9e-97) | Symbols: | B-box type zinc finger protein with CCT domain | chr2:14188159-14190046 REVERSE LENGTH=402;; (*ITAG) Solyc05g024010.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:30237066-30240376 transcript_region:SL2.40ch05:30237066..30240376+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP04_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00007567g0002.1 protein AED:0.11 eAED:0.11 QI:48|1|0.5|1|0|0|2|398|145 NbS00007567g0016.1 protein AED:0.10 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|243; (*GB) gi|224075517|ref|XP_002304662.1| (e_value=4e-102) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|O49255|NAC29_ARATH (e_value=3e-52) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=2e-86) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc01g009860.2.1 (e_value=1e-98) genomic_reference:SL2.40ch01 gene_region:4382336-4384348 transcript_region:SL2.40ch01:4382336..4384348- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00007567g0004.1 protein AED:0.16 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|255564786|ref|XP_002523387.1| (e_value=3e-26) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g024020.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:30241291-30242064 transcript_region:SL2.40ch05:30241291..30242064+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007667g0008.1 protein AED:0.12 eAED:0.13 QI:457|0.75|0.69|1|0.91|0.84|13|224|557; (*GB) gi|359492067|ref|XP_002282310.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266128 [Vitis vinifera];; (*TAIR) AT4G37080.3 (e_value=3e-148) | Symbols: | Protein of unknown function, DUF547 | chr4:17473719-17476716 FORWARD LENGTH=610;; (*ITAG) Solyc04g079340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61453919-61457313 transcript_region:SL2.40ch04:61453919..61457313+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 ***- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00007667g0003.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|1|1|2|0|227; (*GB) gi|224063547|ref|XP_002301198.1| (e_value=2e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g079350.1.1 (e_value=2e-54) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:61465612-61466565 transcript_region:SL2.40ch04:61465612..61466565+ functional_description:"Pheromone receptor-like protein (Fragment) (AHRD V1 *--- Q7XHJ1_QUERO); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00043634g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|134; (*GB) gi|351727671|ref|NP_001235889.1| (e_value=1e-31) uncharacterized protein LOC100500289 precursor [Glycine max];; (*TAIR) AT3G22600.1 (e_value=5e-22) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g082270.2.1 (e_value=8e-38) genomic_reference:SL2.40ch09 gene_region:63453742-63455274 transcript_region:SL2.40ch09:63453742..63455274- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9SFJ1_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00043634g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.85|1|0.16|0.28|7|1058|171; (*GB) gi|225432712|ref|XP_002282836.1| (e_value=1e-79) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*SWP) sp|P05332|YP20_BACLI (e_value=3e-18) Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis GN=p20 PE=4 SV=1;; (*TAIR) AT2G32030.1 (e_value=1e-72) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc06g054090.1.1 (e_value=1e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33417119-33417700 transcript_region:SL2.40ch06:33417119..33417700- go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 **** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00050924g0008.1 protein AED:0.11 eAED:0.11 QI:201|1|1|1|1|1|3|502|478; (*GB) gi|224086044|ref|XP_002307792.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W490|PEPK2_ARATH (e_value=1e-176) Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1;; (*TAIR) AT1G12680.1 (e_value=7e-178) | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase-related kinase 2 | chr1:4320123-4322269 REVERSE LENGTH=470;; (*ITAG) Solyc01g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73033754-73041039 transcript_region:SL2.40ch01:73033754..73041039- go_terms:GO:0006468 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00050924g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|0|0.5|2|60|891; (*GB) gi|359489080|ref|XP_002264194.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g03580-like [Vitis vinifera];; (*SWP) sp|Q9SS60|PP210_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1;; (*TAIR) AT3G03580.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:860695-863343 REVERSE LENGTH=882;; (*ITAG) Solyc01g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73033754-73041039 transcript_region:SL2.40ch01:73033754..73041039- go_terms:GO:0006468 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00050924g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|2|228|224; (*GB) gi|225436164|ref|XP_002264054.1| (e_value=2e-103) PREDICTED: glutathione transferase GST 23 [Vitis vinifera];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=4e-61) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=2e-52) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc01g081270.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:73027037-73028378 transcript_region:SL2.40ch01:73027037..73028378+ functional_description:"Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00061192g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|224117972|ref|XP_002331526.1| (e_value=9e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01840.1 (e_value=4e-13) | Symbols: ATOFP1, OFP1 | ovate family protein 1 | chr5:324552-325364 FORWARD LENGTH=270;; (*ITAG) Solyc07g055240.1.1 (e_value=4e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60663461-60663967 transcript_region:SL2.40ch07:60663461..60663967- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00061192g0005.1 protein AED:0.05 eAED:0.05 QI:334|1|1|1|0.5|0.33|3|325|149; (*ITAG) Solyc07g055250.2.1 (e_value=5e-43) genomic_reference:SL2.40ch07 gene_region:60667571-60668903 transcript_region:SL2.40ch07:60667571..60668903- go_terms:GO:0016998 functional_description:"Cell wall-associated hydrolase (AHRD V1 ---- Q04CK3_LACDB); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00012499g0004.1 protein AED:0.12 eAED:0.12 QI:45|1|1|1|1|1|4|341|123; (*GB) gi|350539055|ref|NP_001234116.1| (e_value=6e-75) similar to 60S ribosomal protein L35 [Solanum lycopersicum];; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=6e-73) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=1e-73) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=6e-79) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbC25563583g0001.1 protein AED:0.18 eAED:0.18 QI:231|0.5|0.66|1|0|0|3|0|137; (*GB) gi|357521683|ref|XP_003631130.1| (e_value=2e-32) ABC transporter-like protein [Medicago truncatula];; (*TAIR) AT3G17930.1 (e_value=4e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:6142307-6143246 REVERSE LENGTH=190;; (*ITAG) Solyc05g006440.2.1 (e_value=2e-38) genomic_reference:SL2.40ch05 gene_region:1069478-1072256 transcript_region:SL2.40ch05:1069478..1072256- functional_description:"Homology to unknown gene (AHRD V1 *--- Q00X05_OSTTA)"; NbS00020610g0009.1 protein AED:0.23 eAED:0.23 QI:330|0.7|0.72|1|0.7|0.81|11|420|600; (*GB) gi|359489252|ref|XP_002263787.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=6e-108) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc03g065250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:38386004-38392028 transcript_region:SL2.40ch03:38386004..38392028- go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00008918g0004.1 protein AED:0.35 eAED:0.35 QI:21|0|0.5|1|0|0.5|2|0|78; (*GB) gi|2735258|gb|AAB93865.1| (e_value=4e-25) protein kinase, partial [Solanum lycopersicum];; (*ITAG) Solyc01g095510.2.1 (e_value=1e-15) genomic_reference:SL2.40ch01 gene_region:78512086-78519591 transcript_region:SL2.40ch01:78512086..78519591+ go_terms:GO:0005384,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005384,GO:0016530 NbC25334910g0003.1 protein AED:0.20 eAED:0.20 QI:19|1|0|1|1|0.5|2|194|25 NbS00010828g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.63|0.90|0.9|0.90|11|0|770; (*GB) gi|359386142|gb|AEV43360.1| (e_value=0.0) RNA recognition motif protein 1 [Citrus sinensis];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=6e-35) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=2e-36) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc10g062180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:55831367-55835458 transcript_region:SL2.40ch10:55831367..55835458+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C6HE59_AJECH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00010828g0005.1 protein AED:0.44 eAED:0.44 QI:60|0|0.5|0.5|0|0|2|169|36 NbS00056520g0011.1 protein AED:0.16 eAED:0.16 QI:455|0|0.25|1|0.66|0.5|4|0|1397; (*GB) gi|113205156|gb|AAX95757.2| (e_value=0.0) BAH domain-containing protein, putative [Solanum lycopersicum];; (*TAIR) AT3G48050.2 (e_value=0.0) | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613;; (*ITAG) Solyc03g114060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58154643-58161458 transcript_region:SL2.40ch03:58154643..58161458+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00056520g0003.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|0|0|2|87|241; (*GB) gi|15594033|emb|CAC69851.1| (e_value=6e-149) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G48050.2 (e_value=2e-63) | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613;; (*ITAG) Solyc03g114060.2.1 (e_value=6e-134) genomic_reference:SL2.40ch03 gene_region:58154643-58161458 transcript_region:SL2.40ch03:58154643..58161458+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00056520g0013.1 protein AED:0.43 eAED:0.43 QI:378|0.87|0.88|0.88|0.87|0.77|9|0|218; (*GB) gi|27527523|emb|CAD42725.1| (e_value=7e-131) putative rac protein [Nicotiana tabacum];; (*SWP) sp|Q6Z808|RAC3_ORYSJ (e_value=1e-124) Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1;; (*TAIR) AT5G62880.1 (e_value=1e-122) | Symbols: ARAC10, ATRAC10, ATROP11, RAC10 | RAC-like 10 | chr5:25237236-25238939 FORWARD LENGTH=215;; (*ITAG) Solyc03g114070.2.1 (e_value=1e-133) genomic_reference:SL2.40ch03 gene_region:58163492-58171392 transcript_region:SL2.40ch03:58163492..58171392- go_terms:GO:0003924 functional_description:"Rac-like GTP-binding protein 4 (AHRD V1 **-- B6TYX5_MAIZE); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00026175g0008.1 protein AED:0.42 eAED:0.42 QI:171|0.5|0.6|0.8|0.5|0.6|5|0|158; (*GB) gi|255581672|ref|XP_002531639.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G34860.2 (e_value=3e-18) | Symbols: EDA3 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr2:14708380-14709804 FORWARD LENGTH=186;; (*ITAG) Solyc01g006130.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:785470-789814 transcript_region:SL2.40ch01:785470..789814+ go_terms:GO:0006457 functional_description:"Homology to unknown gene (AHRD V1 *-*- Q010T6_OSTTA); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00026175g0009.1 protein AED:0.02 eAED:0.02 QI:5|1|0.85|1|1|0.85|7|152|590; (*GB) gi|225437846|ref|XP_002263743.1| (e_value=1e-150) PREDICTED: CDT1-like protein a, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SJW9|CDT1A_ARATH (e_value=2e-101) CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1;; (*TAIR) AT2G31270.1 (e_value=1e-102) | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast CDT1 A | chr2:13329037-13331544 FORWARD LENGTH=571;; (*ITAG) Solyc01g006140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:789370-793859 transcript_region:SL2.40ch01:789370..793859- go_terms:GO:0005515,GO:0004693 functional_description:"DNA replication factor Cdt1 (AHRD V1 *-*- CDT1_HUMAN); contains Interpro domain(s) IPR014939 DNA replication factor CDT1-like "; GO:0005515,GO:0004693 NbS00018034g0007.1 protein AED:0.02 eAED:0.05 QI:0|1|0.5|1|1|1|2|171|853; (*GB) gi|225432500|ref|XP_002279739.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256318 [Vitis vinifera];; (*TAIR) AT5G18980.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:6334944-6337943 REVERSE LENGTH=835;; (*ITAG) Solyc01g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72003994-72006816 transcript_region:SL2.40ch01:72003994..72006816+ go_terms:GO:0005488 functional_description:"At4g14280-like protein (Fragment) (AHRD V1 *-*- C7FD87_ARALP); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00018034g0003.1 protein AED:0.24 eAED:0.25 QI:191|0.73|0.68|1|1|1|16|0|632; (*GB) gi|225432498|ref|XP_002277442.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257995 [Vitis vinifera];; (*TAIR) AT4G14290.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:8225547-8230057 REVERSE LENGTH=558;; (*ITAG) Solyc01g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72007308-72026968 transcript_region:SL2.40ch01:72007308..72026968- functional_description:"Alpha/beta hydrolase (AHRD V1 *--- C4IIG9_CLOBU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00025998g0004.1 protein AED:0.05 eAED:0.06 QI:0|0.8|0.63|1|0.8|0.72|11|0|907; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44210946-44216059 transcript_region:SL2.40ch12:44210946..44216059- go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00012746g0012.1 protein AED:0.01 eAED:0.01 QI:72|1|1|1|1|1|12|491|1005; (*GB) gi|255569143|ref|XP_002525540.1| (e_value=3e-130) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g048100.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56607646-56619411 transcript_region:SL2.40ch07:56607646..56619411+ go_terms:GO:0005622 functional_description:"BRCA1 C Terminus domain containing protein expressed (AHRD V1 *-*- Q6ATS1_ORYSJ); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00012746g0011.1 protein AED:0.22 eAED:0.23 QI:0|1|0.62|1|0.85|0.87|8|0|677; (*GB) gi|359485807|ref|XP_002270988.2| (e_value=0.0) PREDICTED: threonyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|Q0I902|SYT_SYNS3 (e_value=0.0) Threonine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=thrS PE=3 SV=1;; (*TAIR) AT2G04842.1 (e_value=0.0) | Symbols: EMB2761 | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative | chr2:1698466-1701271 REVERSE LENGTH=650;; (*ITAG) Solyc07g048080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56590914-56598265 transcript_region:SL2.40ch07:56590914..56598265+ go_terms:GO:0004829,GO:0042803 functional_description:"Threonyl-tRNA synthetase (AHRD V1 **** D9ZHD6_HYPPE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0004829,GO:0042803 NbS00012746g0002.1 protein AED:0.11 eAED:0.18 QI:246|0|0.5|1|0|0.5|2|0|267; (*GB) gi|92429505|gb|ABD93499.2| (e_value=1e-90) cell adhesion protein [Solanum melongena];; (*SWP) sp|Q9SJ81|FLA7_ARATH (e_value=3e-72) Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1;; (*TAIR) AT2G04780.2 (e_value=2e-73) | Symbols: FLA7 | FASCICLIN-like arabinoogalactan 7 | chr2:1677488-1678252 FORWARD LENGTH=254;; (*ITAG) Solyc07g048090.1.1 (e_value=9e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56600229-56600927 transcript_region:SL2.40ch07:56600229..56600927- go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 2 (AHRD V1 ***- A9XTK7_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00048843g0001.1 protein AED:0.00 eAED:0.00 QI:841|1|1|1|0.25|0.2|5|243|169; (*GB) gi|83284013|gb|ABC01914.1| (e_value=6e-16) unknown [Solanum tuberosum];; (*ITAG) Solyc07g043210.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:54142075-54143659 transcript_region:SL2.40ch07:54142075..54143659- functional_description:"Unknown Protein (AHRD V1)"; NbS00048843g0004.1 protein AED:0.25 eAED:0.39 QI:0|0|0|0.66|0|0|3|0|117; (*GB) gi|2346988|dbj|BAA21928.1| (e_value=2e-13) ZPT4-4 [Petunia x hybrida];; (*ITAG) Solyc03g115450.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59208867-59210204 transcript_region:SL2.40ch03:59208867..59210204+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00017948g0005.1 protein AED:0.05 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|299; (*GB) gi|255571750|ref|XP_002526818.1| (e_value=4e-122) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=9e-86) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G71930.1 (e_value=8e-110) | Symbols: VND7, ANAC030 | vascular related NAC-domain protein 7 | chr1:27076205-27077829 FORWARD LENGTH=324;; (*ITAG) Solyc11g018660.1.1 (e_value=6e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8887768-8890395 transcript_region:SL2.40ch11:8887768..8890395+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MW79_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00001567g0017.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|301; (*GB) gi|156118326|gb|ABU49724.1| (e_value=4e-128) WRKY transcription factor 5 [Solanum tuberosum];; (*SWP) sp|Q9LP56|WRK65_ARATH (e_value=9e-66) Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1;; (*TAIR) AT1G29280.1 (e_value=7e-67) | Symbols: WRKY65, ATWRKY65 | WRKY DNA-binding protein 65 | chr1:10236589-10237467 FORWARD LENGTH=259;; (*ITAG) Solyc02g072190.2.1 (e_value=4e-129) genomic_reference:SL2.40ch02 gene_region:36084177-36085943 transcript_region:SL2.40ch02:36084177..36085943- go_terms:GO:0045449 functional_description:"WRKY transcription factor 5 (AHRD V1 ***- A7UGD2_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00001567g0020.1 protein AED:0.22 eAED:0.22 QI:0|0|0.33|1|0.5|0.33|3|201|121; (*GB) gi|255562486|ref|XP_002522249.1| (e_value=6e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g072170.2.1 (e_value=9e-34) genomic_reference:SL2.40ch02 gene_region:36069129-36069636 transcript_region:SL2.40ch02:36069129..36069636- functional_description:"Unknown Protein (AHRD V1)"; NbS00001567g0018.1 protein AED:0.11 eAED:0.11 QI:37|1|1|1|1|1|2|256|217; (*GB) gi|225443742|ref|XP_002268815.1| (e_value=4e-140) PREDICTED: ras-related protein RABA1d [Vitis vinifera];; (*SWP) sp|Q9FK68|RAA1C_ARATH (e_value=6e-137) Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1;; (*TAIR) AT5G45750.1 (e_value=5e-138) | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1C | chr5:18559318-18560639 FORWARD LENGTH=216;; (*ITAG) Solyc02g072180.2.1 (e_value=2e-154) genomic_reference:SL2.40ch02 gene_region:36074672-36080983 transcript_region:SL2.40ch02:36074672..36080983+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00018893g0009.1 protein AED:0.06 eAED:0.06 QI:40|0.75|0.8|1|0.75|0.6|5|49|437; (*GB) gi|333595899|gb|AEF58501.1| (e_value=0.0) actin [Platycodon grandiflorus];; (*SWP) sp|O81221|ACT_GOSHI (e_value=0.0) Actin OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT3G53750.1 (e_value=0.0) | Symbols: ACT3 | actin 3 | chr3:19915924-19917371 FORWARD LENGTH=377;; (*ITAG) Solyc10g086460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64597752-64599548 transcript_region:SL2.40ch10:64597752..64599548+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q9SAR7_STRAF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00023924g0002.1 protein AED:0.30 eAED:0.32 QI:0|0.33|0.42|0.85|0.83|0.85|7|1091|215; (*GB) gi|224085366|ref|XP_002307555.1| (e_value=4e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59090.2 (e_value=2e-25) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:21839334-21842449 FORWARD LENGTH=373;; (*ITAG) Solyc02g070860.2.1 (e_value=3e-65) genomic_reference:SL2.40ch02 gene_region:35032801-35046444 transcript_region:SL2.40ch02:35032801..35046444+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023924g0001.1 protein AED:0.40 eAED:0.40 QI:218|0|0.5|1|0|0.5|2|507|87 NbS00002458g0033.1 protein AED:0.08 eAED:0.08 QI:133|0.87|1|1|1|1|9|52|824; (*GB) gi|75282482|sp|Q43191.1|LOX15_SOLTU (e_value=0.0) RecName: Full=Probable linoleate 9S-lipoxygenase 5; AltName: Full=Leaf lipoxygenase;; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=0.0) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=0.0) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81264237-81268132 transcript_region:SL2.40ch01:81264237..81268132+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00002458g0031.1 protein AED:0.18 eAED:0.18 QI:321|1|1|1|0.9|0.81|11|199|682; (*GB) gi|225464625|ref|XP_002275958.1| (e_value=0.0) PREDICTED: translocation protein SEC63 homolog [Vitis vinifera];; (*SWP) sp|Q5R660|SEC63_PONAB (e_value=7e-29) Translocation protein SEC63 homolog OS=Pongo abelii GN=SEC63 PE=2 SV=1;; (*TAIR) AT1G79940.3 (e_value=0.0) | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-containing protein | chr1:30070023-30073237 FORWARD LENGTH=687;; (*ITAG) Solyc03g007610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2146595-2154565 transcript_region:SL2.40ch03:2146595..2154565- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_DICT6); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00002458g0041.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|147; (*GB) gi|224118136|ref|XP_002317740.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52960.1 (e_value=3e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21477250-21478269 FORWARD LENGTH=170;; (*ITAG) Solyc03g007540.2.1 (e_value=3e-63) genomic_reference:SL2.40ch03 gene_region:2111581-2114951 transcript_region:SL2.40ch03:2111581..2114951- functional_description:"Unknown Protein (AHRD V1)"; NbS00002458g0039.1 protein AED:0.27 eAED:0.28 QI:0|0.62|0.77|1|0.62|0.55|9|340|416; (*GB) gi|359490595|ref|XP_002274287.2| (e_value=5e-116) PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=7e-75) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT3G49140.1 (e_value=5e-76) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18212187-18215557 REVERSE LENGTH=499;; (*ITAG) Solyc03g007590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2133379-2141839 transcript_region:SL2.40ch03:2133379..2141839- functional_description:"Unknown Protein (AHRD V1)"; NbS00002458g0034.1 protein AED:0.04 eAED:0.04 QI:175|0.66|0.71|0.85|0.83|0.71|7|0|327; (*GB) gi|225464623|ref|XP_002274318.1| (e_value=2e-138) PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Vitis vinifera];; (*SWP) sp|Q8LG95|PP332_ARATH (e_value=2e-117) Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1;; (*TAIR) AT4G21190.1 (e_value=2e-118) | Symbols: emb1417 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11292493-11293763 REVERSE LENGTH=307;; (*ITAG) Solyc03g007600.2.1 (e_value=5e-178) genomic_reference:SL2.40ch03 gene_region:2142814-2146247 transcript_region:SL2.40ch03:2142814..2146247+ functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 ***- PP332_ARATH); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002458g0047.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|0.5|0.33|3|0|957; (*GB) gi|225462675|ref|XP_002266751.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243267 [Vitis vinifera];; (*TAIR) AT5G52950.1 (e_value=1e-112) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21473887-21476939 REVERSE LENGTH=948;; (*ITAG) Solyc03g007550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2115577-2119868 transcript_region:SL2.40ch03:2115577..2119868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002458g0035.1 protein AED:0.20 eAED:0.20 QI:0|0.54|0.33|1|1|1|12|0|900; (*GB) gi|224116838|ref|XP_002331826.1| (e_value=0.0) multidrug resistance protein ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00002458g0037.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.55|1|0.75|0.77|9|337|423; (*GB) gi|297742283|emb|CBI34432.3| (e_value=3e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=4e-64) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=3e-65) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=3e-78) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00002458g0013.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|359490553|ref|XP_002266842.2| (e_value=7e-74) PREDICTED: ABC transporter C family member 10-like [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=1e-34) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=8e-36) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=4e-104) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00002458g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|71; (*GB) gi|224124386|ref|XP_002330010.1| (e_value=4e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g007840.1.1 (e_value=8e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2384211-2386244 transcript_region:SL2.40ch03:2384211..2386244- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00002458g0048.1 protein AED:0.45 eAED:0.48 QI:0|0|0|1|0|0|2|0|160; (*GB) gi|359490537|ref|XP_002267650.2| (e_value=7e-43) PREDICTED: ABC transporter C family member 10-like [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=5e-32) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=4e-33) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00002458g0046.1 protein AED:0.47 eAED:0.67 QI:0|0|0|1|0|0|2|0|69 NbS00030432g0001.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|224054653|ref|XP_002298344.1| (e_value=4e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7ZW78|RN181_DANRE (e_value=7e-18) E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2;; (*TAIR) AT4G26400.1 (e_value=7e-19) | Symbols: | RING/U-box superfamily protein | chr4:13344953-13346023 REVERSE LENGTH=356;; (*ITAG) Solyc01g016410.2.1 (e_value=1e-75) genomic_reference:SL2.40ch01 gene_region:19490537-19491509 transcript_region:SL2.40ch01:19490537..19491509- go_terms:GO:0008270 functional_description:"RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00030432g0011.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|245; (*GB) gi|115467002|ref|NP_001057100.1| (e_value=3e-115) Os06g0207500 [Oryza sativa Japonica Group];; (*TAIR) AT5G06700.1 (e_value=3e-114) | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608;; (*ITAG) Solyc01g016380.2.1 (e_value=2e-166) genomic_reference:SL2.40ch01 gene_region:19474845-19476882 transcript_region:SL2.40ch01:19474845..19476882- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00030432g0014.1 protein AED:0.36 eAED:0.36 QI:345|0.42|0.5|1|0.57|0.75|8|0|464; (*GB) gi|255557871|ref|XP_002519965.1| (e_value=0.0) Extensin-3 precursor, putative [Ricinus communis];; (*TAIR) AT1G32090.1 (e_value=0.0) | Symbols: | early-responsive to dehydration stress protein (ERD4) | chr1:11540244-11544041 REVERSE LENGTH=806;; (*ITAG) Solyc08g076310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57437506-57445845 transcript_region:SL2.40ch08:57437506..57445845- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00030432g0003.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0.33|1|1|1|3|0|286; (*GB) gi|255557871|ref|XP_002519965.1| (e_value=2e-102) Extensin-3 precursor, putative [Ricinus communis];; (*TAIR) AT1G32090.1 (e_value=1e-95) | Symbols: | early-responsive to dehydration stress protein (ERD4) | chr1:11540244-11544041 REVERSE LENGTH=806;; (*ITAG) Solyc08g076310.2.1 (e_value=3e-146) genomic_reference:SL2.40ch08 gene_region:57437506-57445845 transcript_region:SL2.40ch08:57437506..57445845- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00004755g0015.1 protein AED:0.05 eAED:0.05 QI:111|0.71|0.37|1|0.57|0.62|8|0|870; (*GB) gi|302143309|emb|CBI21870.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JIM3|RAD26_MOUSE (e_value=6e-110) Putative DNA repair and recombination protein RAD26-like OS=Mus musculus GN=Rad26l PE=2 SV=2;; (*TAIR) AT1G03750.1 (e_value=0.0) | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD LENGTH=862;; (*ITAG) Solyc07g053870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59600927-59609094 transcript_region:SL2.40ch07:59600927..59609094- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00004755g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.85|0.8|1|0.5|0.53|15|573|554; (*GB) gi|255553695|ref|XP_002517888.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|P36096|TUL1_YEAST (e_value=2e-34) Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1;; (*TAIR) AT4G28370.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:14035016-14039122 FORWARD LENGTH=562;; (*ITAG) Solyc07g053850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59578302-59588911 transcript_region:SL2.40ch07:59578302..59588911- go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *--- B9PQV1_TOXGO); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00004755g0011.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|199; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=5e-48) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=2e-34) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT4G28365.1 (e_value=3e-38) | Symbols: ENODL3, AtENODL3 | early nodulin-like protein 3 | chr4:14033012-14033688 REVERSE LENGTH=199;; (*ITAG) Solyc07g053880.1.1 (e_value=9e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00010624g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|530; (*GB) gi|30387023|emb|CAD89798.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|O82811|NRT21_ARATH (e_value=0.0) High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1;; (*TAIR) AT1G08090.1 (e_value=0.0) | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524139-2525920 FORWARD LENGTH=530;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00026427g0006.1 protein AED:0.00 eAED:0.00 QI:261|1|1|1|0.5|0.33|3|372|435; (*GB) gi|75150330|sp|Q8GSM7.1|HCT_TOBAC (e_value=0.0) RecName: Full=Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase; AltName: Full=Hydroxycinnamoyl transferase;; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=0.0) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=0.0) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00026427g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|531; (*GB) gi|19878|emb|CAA44820.1| (e_value=0.0) heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|P26413|HSP70_SOYBN (e_value=0.0) Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc03g117630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60777610-60779574 transcript_region:SL2.40ch03:60777610..60779574- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00026427g0008.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|0|0|2|0|63 NbS00029141g0002.1 protein AED:0.10 eAED:0.20 QI:55|0.5|0.66|1|0.5|0.33|3|0|152; (*GB) gi|225426371|ref|XP_002269437.1| (e_value=4e-44) PREDICTED: protein LURP-one-related 4 [Vitis vinifera];; (*SWP) sp|Q67XV7|LOR3_ARATH (e_value=1e-25) Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2;; (*TAIR) AT1G53870.1 (e_value=8e-27) | Symbols: | Protein of unknown function (DUF567) | chr1:20112295-20113057 FORWARD LENGTH=217;; (*ITAG) Solyc12g056310.1.1 (e_value=5e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47638525-47639411 transcript_region:SL2.40ch12:47638525..47639411+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00012423g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|255542726|ref|XP_002512426.1| (e_value=1e-32) RALFL33, putative [Ricinus communis];; (*TAIR) AT4G15800.1 (e_value=1e-29) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc01g067900.2.1 (e_value=3e-46) genomic_reference:SL2.40ch01 gene_region:69313981-69314853 transcript_region:SL2.40ch01:69313981..69314853+ functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q84UC8_9ROSI); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; NbS00012423g0001.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|1|1|2|0|489; (*GB) gi|190887122|gb|ACE95677.1| (e_value=0.0) putative xylosyl transferase [Coffea canephora];; (*SWP) sp|Q9LZJ3|XT1_ARATH (e_value=0.0) Xyloglucan 6-xylosyltransferase OS=Arabidopsis thaliana GN=XT1 PE=1 SV=1;; (*TAIR) AT3G62720.2 (e_value=0.0) | Symbols: ATXT1, XT1, XXT1 | xylosyltransferase 1 | chr3:23201326-23202708 FORWARD LENGTH=460;; (*ITAG) Solyc03g115740.1.1 (e_value=5e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00012423g0013.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|226 NbS00012423g0006.1 protein AED:0.03 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|329; (*GB) gi|224121690|ref|XP_002318648.1| (e_value=8e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUD9|SRO2_ARATH (e_value=8e-36) Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1;; (*TAIR) AT1G23550.1 (e_value=6e-37) | Symbols: SRO2 | similar to RCD one 2 | chr1:8350912-8352232 FORWARD LENGTH=323;; (*ITAG) Solyc03g114360.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:58422049-58424255 transcript_region:SL2.40ch03:58422049..58424255- go_terms:GO:0016042,GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0016042,GO:0003950 NbS00012423g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|118483904|gb|ABK93842.1| (e_value=6e-17) unknown [Populus trichocarpa]; NbS00012423g0014.1 protein AED:0.58 eAED:0.70 QI:0|0|0|0.66|0|0|3|0|84 NbS00005686g0011.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|1|2|354|128; (*GB) gi|359497222|ref|XP_003635456.1| (e_value=1e-36) PREDICTED: protein IQ-DOMAIN 14-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-14) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT3G51380.1 (e_value=3e-36) | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-19074426 REVERSE LENGTH=103;; (*ITAG) Solyc04g050050.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00005686g0010.1 protein AED:0.13 eAED:0.13 QI:346|1|1|1|0.66|0.57|7|390|185; (*GB) gi|169786772|gb|ACA79924.1| (e_value=1e-124) chloroplast N receptor-interacting protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q38853|STR15_ARATH (e_value=3e-48) Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1;; (*TAIR) AT4G35770.1 (e_value=2e-49) | Symbols: SEN1, ATSEN1, DIN1 | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:16945073-16945983 FORWARD LENGTH=182;; (*ITAG) Solyc02g083280.2.1 (e_value=5e-97) genomic_reference:SL2.40ch02 gene_region:41305686-41308404 transcript_region:SL2.40ch02:41305686..41308404+ go_terms:GO:0004792 functional_description:"Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 (AHRD V1 *--* TSTD1_HUMAN); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792 NbS00005686g0016.1 protein AED:0.24 eAED:0.25 QI:216|0.83|0.85|1|0.83|0.71|7|323|381; (*GB) gi|224133580|ref|XP_002327630.1| (e_value=3e-128) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35760.1 (e_value=1e-111) | Symbols: | NAD(P)H dehydrogenase (quinone)s | chr4:16942733-16944622 REVERSE LENGTH=376;; (*ITAG) Solyc02g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41295332-41300101 transcript_region:SL2.40ch02:41295332..41300101- functional_description:"Vitamin K epoxide reductase (AHRD V1 **-- B4AXQ4_9CHRO); contains Interpro domain(s) IPR012932 Vitamin K epoxide reductase "; NbS00005686g0017.1 protein AED:0.42 eAED:0.42 QI:363|0.71|0.66|1|0.78|0.8|15|0|525; (*GB) gi|365222936|gb|AEW69820.1| (e_value=0.0) Hop-interacting protein THI135 [Solanum lycopersicum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-41) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G35780.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc02g083290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41311201-41321957 transcript_region:SL2.40ch02:41311201..41321957- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00014549g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|147; (*GB) gi|224146466|ref|XP_002326015.1| (e_value=2e-37) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6J9Q2|ERF86_ARATH (e_value=6e-24) Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2;; (*TAIR) AT5G18560.1 (e_value=4e-25) | Symbols: PUCHI | Integrase-type DNA-binding superfamily protein | chr5:6164859-6165905 REVERSE LENGTH=348;; (*ITAG) Solyc04g072300.1.1 (e_value=2e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56931578-56932060 transcript_region:SL2.40ch04:56931578..56932060+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014549g0013.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.91|0.91|24|337|749; (*GB) gi|225429246|ref|XP_002264732.1| (e_value=0.0) PREDICTED: exocyst complex component 3 [Vitis vinifera];; (*SWP) sp|Q54BP6|EXOC3_DICDI (e_value=1e-61) Exocyst complex component 3 OS=Dictyostelium discoideum GN=exoc3 PE=3 SV=1;; (*TAIR) AT1G71820.1 (e_value=0.0) | Symbols: SEC6 | SEC6 | chr1:27010022-27016745 FORWARD LENGTH=752;; (*ITAG) Solyc04g072290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56911520-56930725 transcript_region:SL2.40ch04:56911520..56930725+ functional_description:"Exocyst complex component sec6 (AHRD V1 ***- B0CUD6_LACBS); contains Interpro domain(s) IPR010326 Exocyst complex component Sec6 "; NbS00014549g0004.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|9955530|emb|CAC05469.1| (e_value=3e-17) putative hydrolase [Arabidopsis thaliana];; (*TAIR) AT5G09430.1 (e_value=8e-20) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311;; (*ITAG) Solyc11g009000.1.1 (e_value=7e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3151023-3152011 transcript_region:SL2.40ch11:3151023..3152011+ functional_description:"Carboxylesterase bioH (AHRD V1 *--- BIOH_TOLAT); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00014549g0003.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|73 NbS00014549g0012.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|1|1|2|92|131 NbS00010611g0006.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0.5|0.33|3|0|316; (*GB) gi|357480407|ref|XP_003610489.1| (e_value=8e-70) hypothetical protein MTR_4g132780 [Medicago truncatula];; (*TAIR) AT1G62390.1 (e_value=1e-69) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g081200.1.1 (e_value=1e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39832231-39834567 transcript_region:SL2.40ch02:39832231..39834567- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT1_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00010611g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|0.75|4|0|315; (*GB) gi|131053151|gb|ABO32691.1| (e_value=0.0) ACC oxidase ACO3 [Nicotiana attenuata];; (*SWP) sp|P31237|ACCO_ACTDE (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1;; (*TAIR) AT1G05010.1 (e_value=1e-163) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc02g036350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21279767-21281954 transcript_region:SL2.40ch02:21279767..21281954+ go_terms:GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- A4ZYQ6_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00033660g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.92|1|0.84|0.78|14|350|445; (*GB) gi|255556025|ref|XP_002519047.1| (e_value=0.0) allantoinase, putative [Ricinus communis];; (*SWP) sp|Q9RKU5|ALLB_STRCO (e_value=1e-99) Allantoinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=allB PE=3 SV=1;; (*TAIR) AT4G04955.1 (e_value=0.0) | Symbols: ATALN, ALN | allantoinase | chr4:2522301-2525259 REVERSE LENGTH=506;; (*ITAG) Solyc02g078400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37669852-37677217 transcript_region:SL2.40ch02:37669852..37677217- go_terms:GO:0004038,GO:0004151 functional_description:"Allantoinase (AHRD V1 **** Q6S4R9_ROBPS); contains Interpro domain(s) IPR017593 Allantoinase "; GO:0004038,GO:0004151 NbS00033660g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|1|0|0.33|3|0|155; (*GB) gi|76160988|gb|ABA40457.1| (e_value=7e-103) TSJT1-like protein [Solanum tuberosum];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=6e-49) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=8e-53) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc02g078380.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:37662239-37663693 transcript_region:SL2.40ch02:37662239..37663693- functional_description:"Aluminum-induced protein-like protein (AHRD V1 **-- Q8S2R9_THEHA)"; NbS00033660g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|135258|sp|P24804|TA29_TOBAC (e_value=2e-135) Anther-specific protein TA-29;; (*SWP) sp|P24804|TA29_TOBAC (e_value=7e-137) Anther-specific protein TA-29 OS=Nicotiana tabacum GN=TA-29 PE=2 SV=1;; (*ITAG) Solyc02g078370.1.1 (e_value=9e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37660706-37661650 transcript_region:SL2.40ch02:37660706..37661650+ functional_description:"Anther-specific protein TA-29 (AHRD V1 ***- TA29_TOBAC)"; NbS00061626g0004.1 protein AED:0.15 eAED:0.17 QI:6|0.66|0.25|1|0.33|0.5|4|0|331; (*GB) gi|296083724|emb|CBI23713.3| (e_value=5e-65) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04500.1 (e_value=2e-43) | Symbols: | CCT motif family protein | chr1:1221757-1224235 REVERSE LENGTH=386;; (*ITAG) Solyc09g090650.2.1 (e_value=9e-112) genomic_reference:SL2.40ch09 gene_region:65452268-65455445 transcript_region:SL2.40ch09:65452268..65455445- functional_description:"Zinc finger protein CONSTANS-LIKE 5 (AHRD V1 *--- COL5_ARATH); contains Interpro domain(s) IPR010402 CCT domain "; NbS00024968g0012.1 protein AED:0.32 eAED:0.34 QI:0|0.75|0.4|1|0.5|0.8|5|0|244; (*GB) gi|224145118|ref|XP_002325533.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIJ7|KADC2_ARATH (e_value=2e-88) Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1;; (*TAIR) AT5G47840.1 (e_value=2e-89) | Symbols: AMK2 | adenosine monophosphate kinase | chr5:19375488-19378058 FORWARD LENGTH=283;; (*ITAG) Solyc06g065270.2.1 (e_value=6e-97) genomic_reference:SL2.40ch06 gene_region:37095259-37099538 transcript_region:SL2.40ch06:37095259..37099538- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6STL7_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00001501g0012.1 protein AED:0.13 eAED:0.13 QI:13|1|0.8|1|0.5|0.6|5|289|288; (*GB) gi|225458798|ref|XP_002285196.1| (e_value=2e-39) PREDICTED: acyl-CoA-binding domain-containing protein 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STX1|ACBP3_ARATH (e_value=2e-33) Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1;; (*TAIR) AT4G24230.5 (e_value=2e-34) | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12567240-12568754 REVERSE LENGTH=362;; (*ITAG) Solyc04g078090.2.1 (e_value=8e-77) genomic_reference:SL2.40ch04 gene_region:60529683-60534340 transcript_region:SL2.40ch04:60529683..60534340+ go_terms:GO:0000062,GO:0005488 functional_description:"Acyl-CoA-binding domain-containing protein 6 (AHRD V1 *-*- B6SHQ7_MAIZE); contains Interpro domain(s) IPR000582 Acyl-CoA-binding protein, ACBP "; GO:0000062,GO:0005488 NbS00001501g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|255561767|ref|XP_002521893.1| (e_value=3e-38) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G37870.1 (e_value=9e-36) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc05g041140.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:48734343-48734909 transcript_region:SL2.40ch05:48734343..48734909+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00001501g0005.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|184 NbS00012202g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.66|0.6|0.9|0.55|0.7|10|533|359; (*GB) gi|147779795|emb|CAN62295.1| (e_value=7e-154) hypothetical protein VITISV_019973 [Vitis vinifera];; (*SWP) sp|Q84XV2|GTE1_ARATH (e_value=4e-104) Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1;; (*TAIR) AT2G34900.1 (e_value=3e-105) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386;; (*ITAG) Solyc09g090370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65243091-65247723 transcript_region:SL2.40ch09:65243091..65247723+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00002078g0016.1 protein AED:0.14 eAED:0.14 QI:336|0.95|0.95|0.97|0.88|0.88|45|433|1977; (*GB) gi|359478773|ref|XP_002283298.2| (e_value=0.0) PREDICTED: callose synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9AUE0|CALS1_ARATH (e_value=0.0) Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2;; (*TAIR) AT1G05570.1 (e_value=0.0) | Symbols: CALS1, GSL06, ATGSL6, ATGSL06, GSL6 | callose synthase 1 | chr1:1647880-1658677 REVERSE LENGTH=1950;; (*ITAG) Solyc01g073750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00002078g0007.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.66|1|1|3|0|301; (*GB) gi|224076046|ref|XP_002304887.1| (e_value=3e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19900.1 (e_value=3e-54) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g073770.2.1 (e_value=9e-113) genomic_reference:SL2.40ch01 gene_region:70398109-70399192 transcript_region:SL2.40ch01:70398109..70399192+ functional_description:"PRLI-interacting factor A (AHRD V1 *-*- B6TGN5_MAIZE)"; NbS00047652g0005.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|112; (*ITAG) Solyc10g049530.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00006166g0006.1 protein AED:0.11 eAED:0.11 QI:378|1|0.5|1|1|1|2|0|53; (*GB) gi|296090451|emb|CBI40270.3| (e_value=6e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G19490.1 (e_value=4e-18) | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter 1 | chr3:6754875-6758127 REVERSE LENGTH=576;; (*ITAG) Solyc11g044540.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35907027-35917923 transcript_region:SL2.40ch11:35907027..35917923- go_terms:GO:0016021 functional_description:"Na+/H+ antiporter NhaD (AHRD V1 ***- A4VP01_PSEU5); contains Interpro domain(s) IPR018390 Na+/H+ antiporter NhaD-like "; GO:0016021 NbS00006166g0002.1 protein AED:0.30 eAED:0.31 QI:0|0.71|0.62|0.87|1|1|8|0|394; (*GB) gi|224103659|ref|XP_002313143.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19490.1 (e_value=5e-179) | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter 1 | chr3:6754875-6758127 REVERSE LENGTH=576;; (*ITAG) Solyc11g044540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35907027-35917923 transcript_region:SL2.40ch11:35907027..35917923- go_terms:GO:0016021 functional_description:"Na+/H+ antiporter NhaD (AHRD V1 ***- A4VP01_PSEU5); contains Interpro domain(s) IPR018390 Na+/H+ antiporter NhaD-like "; GO:0016021 NbS00007767g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.64|0.6|0.93|0.64|0.53|15|356|568; (*GB) gi|356558725|ref|XP_003547653.1| (e_value=0.0) PREDICTED: uridine kinase-like protein 1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9FKS0|UKL1_ARATH (e_value=0.0) Uridine kinase-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=UKL1 PE=1 SV=1;; (*TAIR) AT5G40870.1 (e_value=0.0) | Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 | uridine kinase/uracil phosphoribosyltransferase 1 | chr5:16375021-16378384 FORWARD LENGTH=486;; (*ITAG) Solyc06g065580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37357720-37366233 transcript_region:SL2.40ch06:37357720..37366233- go_terms:GO:0042802,GO:0004845 functional_description:"Uridine kinase (AHRD V1 ***- D7LLX3_ARALY); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0042802,GO:0004845 NbS00018025g0018.1 protein AED:0.15 eAED:0.15 QI:1332|1|0.85|1|0.66|0.42|7|0|398; (*GB) gi|225451866|ref|XP_002282329.1| (e_value=0.0) PREDICTED: sodium-coupled neutral amino acid transporter 4 [Vitis vinifera];; (*SWP) sp|Q9JHZ9|S38A3_RAT (e_value=4e-18) Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1;; (*TAIR) AT3G30390.2 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460;; (*ITAG) Solyc02g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31420560-31423989 transcript_region:SL2.40ch02:31420560..31423989+ functional_description:"Amino acid transporter (AHRD V1 ***- B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00018025g0019.1 protein AED:0.29 eAED:0.29 QI:187|1|0.66|1|0.5|0|3|0|114; (*GB) gi|225451862|ref|XP_002282212.1| (e_value=5e-63) PREDICTED: uncharacterized protein LOC100263512 [Vitis vinifera];; (*SWP) sp|F4K657|BL1S2_ARATH (e_value=3e-47) Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1;; (*TAIR) AT5G49550.1 (e_value=3e-48) | Symbols: BLOS2 | Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. | chr5:20106702-20107156 REVERSE LENGTH=127;; (*ITAG) Solyc02g065690.2.1 (e_value=1e-73) genomic_reference:SL2.40ch02 gene_region:31429678-31431779 transcript_region:SL2.40ch02:31429678..31431779+ go_terms:GO:0043015 functional_description:"Biogenesis of lysosome-related organelles complex-1 subunit 2 (AHRD V1 ***- C1BLD5_OSMMO); contains Interpro domain(s) IPR019269 Biogenesis of lysosome-related organelles complex-1, subunit 2 "; GO:0043015 NbS00018025g0020.1 protein AED:0.19 eAED:0.20 QI:0|0.2|0|0.83|0.4|0.33|6|0|703; (*GB) gi|298204425|emb|CBI16905.3| (e_value=2e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8MQR0|WIT2_ARATH (e_value=3e-69) WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1;; (*TAIR) AT1G68910.3 (e_value=6e-71) | Symbols: WIT2 | WPP domain-interacting protein 2 | chr1:25908373-25910485 REVERSE LENGTH=582;; (*ITAG) Solyc02g065660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31386857-31391603 transcript_region:SL2.40ch02:31386857..31391603- go_terms:GO:0042802 functional_description:"WPP domain-interacting tail-anchored protein 1 (AHRD V1 ***- WIT1_ARATH)"; GO:0042802 NbS00061703g0004.1 protein AED:0.17 eAED:0.17 QI:1354|1|1|1|0.8|0.81|11|362|395; (*GB) gi|296082444|emb|CBI21449.3| (e_value=1e-170) unnamed protein product [Vitis vinifera];; (*SWP) sp|P53393|SUT3_STYHA (e_value=8e-164) Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1;; (*TAIR) AT5G10180.1 (e_value=3e-147) | Symbols: AST68, SULTR2;1 | slufate transporter 2;1 | chr5:3193225-3196818 FORWARD LENGTH=677;; (*ITAG) Solyc04g072740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57302446-57306267 transcript_region:SL2.40ch04:57302446..57306267- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 1 (AHRD V1 **** SUT1_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00002472g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|7|223|736; (*GB) gi|255547253|ref|XP_002514684.1| (e_value=0.0) diacylglycerol kinase, theta, putative [Ricinus communis];; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G07920.1 (e_value=0.0) | Symbols: DGK1, ATDGK1 | diacylglycerol kinase1 | chr5:2525197-2528396 REVERSE LENGTH=728;; (*ITAG) Solyc12g039180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37986331-37993663 transcript_region:SL2.40ch12:37986331..37993663+ go_terms:GO:0005509 functional_description:"Diacylglycerol kinase 1 (AHRD V1 ***- A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0005509 NbS00027172g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|184; (*GB) gi|225445346|ref|XP_002281585.1| (e_value=9e-58) PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera];; (*TAIR) AT2G44300.1 (e_value=9e-31) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc06g069110.2.1 (e_value=8e-64) genomic_reference:SL2.40ch06 gene_region:39286953-39287833 transcript_region:SL2.40ch06:39286953..39287833- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B8LM50_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00047804g0005.1 protein AED:0.12 eAED:0.12 QI:264|1|0.94|1|0.77|0.78|19|142|797; (*GB) gi|225444758|ref|XP_002279372.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257610 [Vitis vinifera];; (*SWP) sp|Q6NXD8|DEN5B_DANRE (e_value=8e-14) DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2;; (*TAIR) AT5G35560.1 (e_value=0.0) | Symbols: | DENN (AEX-3) domain-containing protein | chr5:13742458-13747464 REVERSE LENGTH=765;; (*ITAG) Solyc07g041660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51165537-51176923 transcript_region:SL2.40ch07:51165537..51176923- functional_description:"DENN domain containing protein expressed (AHRD V1 *-*- Q10RU8_ORYSJ); contains Interpro domain(s) IPR001194 DENN "; NbS00013647g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.85|0.95|0.85|0.76|21|460|904; (*GB) gi|225456715|ref|XP_002274303.1| (e_value=0.0) PREDICTED: ABC transporter A family member 7 [Vitis vinifera];; (*SWP) sp|Q9STT5|AB7A_ARATH (e_value=0.0) ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2;; (*TAIR) AT3G47780.1 (e_value=0.0) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935;; (*ITAG) Solyc03g113040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57389062-57397332 transcript_region:SL2.40ch03:57389062..57397332- go_terms:GO:0042626 functional_description:"ATP-binding cassette (ABC) transporter 17 (AHRD V1 ***- Q4H493_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00018983g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|57013977|ref|YP_173449.1| (e_value=3e-59) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00018983g0029.1 protein AED:0.14 eAED:0.24 QI:0|0|0|1|0.33|0|4|0|236; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=4e-13) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-14) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=4e-14) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc12g036620.1.1 (e_value=7e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:31776580-31776897 transcript_region:SL2.40ch12:31776580..31776897- functional_description:"Unknown Protein (AHRD V1)"; NbS00018983g0025.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|316; (*GB) gi|57014010|ref|YP_173481.1| (e_value=3e-154) hypothetical protein NitaMp144 [Nicotiana tabacum];; (*SWP) sp|P93312|YMF16_ARATH (e_value=1e-117) Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2;; (*ITAG) ATMG00570.1 (e_value=5e-133) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc12g035750.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:28970984-28972875 transcript_region:SL2.40ch12:28970984..28972875- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit K chloroplastic (AHRD V1 *-*- D2KLK7_OLEEU); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00018983g0026.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|0|0|3|0|233; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=8e-119) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=9e-74) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=7e-75) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=5e-118) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00018983g0027.1 protein AED:0.43 eAED:0.85 QI:0|0|0|1|0|0|3|0|167; (*GB) gi|269859027|gb|ACZ52180.1| (e_value=2e-13) ribosomal protein L10 [Coffea arabica];; (*ITAG) Solyc00g022100.1.1 (e_value=6e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00018983g0023.1 protein AED:0.53 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|86 NbS00024848g0008.1 protein AED:0.00 eAED:0.00 QI:249|1|1|1|1|1|2|183|255; (*GB) gi|255538274|ref|XP_002510202.1| (e_value=1e-51) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=9e-41) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=7e-42) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc04g078790.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:61052134-61053446 transcript_region:SL2.40ch04:61052134..61053446+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00024848g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|8|330|449; (*GB) gi|225458641|ref|XP_002284832.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 18 [Vitis vinifera];; (*SWP) sp|Q3SZD4|WDR18_BOVIN (e_value=7e-44) WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1;; (*TAIR) AT3G49180.1 (e_value=2e-175) | Symbols: RID3 | Transducin/WD40 repeat-like superfamily protein | chr3:18229810-18231874 FORWARD LENGTH=438;; (*ITAG) Solyc04g078780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61041799-61046513 transcript_region:SL2.40ch04:61041799..61046513+ go_terms:GO:0000166 functional_description:"WD repeat protein 18 (AHRD V1 **-- B0WSI0_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00013369g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0|0|3|340|95; (*SWP) sp|Q6XJG8|RPN1B_ARATH (e_value=2e-13) 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis thaliana GN=RPN1B PE=2 SV=1;; (*TAIR) AT4G28470.1 (e_value=1e-14) | Symbols: RPN1B, ATRPN1B | 26S proteasome regulatory subunit S2 1B | chr4:14067082-14072357 REVERSE LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=9e-22) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00040824g0004.1 protein AED:0.40 eAED:0.40 QI:114|0.75|0.88|0.88|1|1|9|170|291; (*GB) gi|77416943|gb|ABA81867.1| (e_value=2e-169) unknown [Solanum tuberosum];; (*TAIR) AT3G55000.1 (e_value=1e-124) | Symbols: TON1A, TON1 | tonneau family protein | chr3:20381612-20383577 FORWARD LENGTH=260;; (*ITAG) Solyc04g049710.2.1 (e_value=3e-175) genomic_reference:SL2.40ch04 gene_region:42288001-42302109 transcript_region:SL2.40ch04:42288001..42302109- go_terms:GO:0005515 functional_description:"FGFR1 oncogene partner (AHRD V1 *--- FR1OP_HUMAN); contains Interpro domain(s) IPR006594 LisH dimerisation motif "; GO:0005515 NbS00058697g0004.1 protein AED:0.25 eAED:0.25 QI:323|0.8|1|1|0.8|1|6|394|548; (*GB) gi|5734440|emb|CAB52689.1| (e_value=0.0) hexose transporter [Solanum lycopersicum];; (*SWP) sp|Q94AZ2|STP13_ARATH (e_value=0.0) Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2;; (*TAIR) AT5G26340.1 (e_value=0.0) | Symbols: MSS1, STP13, ATSTP13 | Major facilitator superfamily protein | chr5:9243851-9246994 REVERSE LENGTH=526;; (*ITAG) Solyc09g075820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62931041-62936921 transcript_region:SL2.40ch09:62931041..62936921- go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CANFA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00060255g0003.1 protein AED:0.12 eAED:0.13 QI:0|1|0.85|1|1|1|7|0|340; (*GB) gi|224062940|ref|XP_002300939.1| (e_value=5e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=4e-169) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1;; (*TAIR) AT5G42240.1 (e_value=3e-170) | Symbols: scpl42 | serine carboxypeptidase-like 42 | chr5:16888717-16890931 FORWARD LENGTH=473;; (*ITAG) Solyc01g104850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84939746-84943822 transcript_region:SL2.40ch01:84939746..84943822+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00010500g0002.1 protein AED:0.28 eAED:0.30 QI:0|0|0|0.75|1|1|4|0|416; (*GB) gi|359497037|ref|XP_002263775.2| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100247282 [Vitis vinifera];; (*TAIR) AT1G79740.1 (e_value=4e-21) | Symbols: | hAT transposon superfamily | chr1:30004367-30006715 REVERSE LENGTH=651;; (*ITAG) Solyc08g007470.1.1 (e_value=1e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00010500g0113.1 protein AED:0.15 eAED:0.17 QI:0|0.36|0.08|1|0.45|0.41|12|0|809 NbS00010500g0114.1 protein AED:0.59 eAED:0.59 QI:0|0.33|0|0.5|1|1|4|0|133 NbS00010500g0112.1 protein AED:0.07 eAED:0.07 QI:252|1|1|1|1|1|7|207|362 NbS00061954g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|193527442|gb|ACF19786.1| (e_value=3e-43) NAC transcription factor [Nicotiana tabacum]; NbS00061954g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.85|1|1|1|7|0|439; (*GB) gi|225425848|ref|XP_002265721.1| (e_value=0.0) PREDICTED: lysine histidine transporter 1 [Vitis vinifera];; (*SWP) sp|Q9LRB5|LHT2_ARATH (e_value=0.0) Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1;; (*TAIR) AT1G24400.1 (e_value=0.0) | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine transporter 2 | chr1:8651563-8653561 REVERSE LENGTH=441;; (*ITAG) Solyc03g111040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55771884-55774232 transcript_region:SL2.40ch03:55771884..55774232- go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00055130g0003.1 protein AED:0.02 eAED:0.02 QI:100|0.5|0.66|1|0|0|3|281|261 NbS00043595g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.87|1|1|1|8|259|598; (*GB) gi|16215471|emb|CAC82999.1| (e_value=0.0) calcium-dependent protein kinase 3 [Nicotiana tabacum];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=0.0) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=0.0) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc11g006370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1080169-1085490 transcript_region:SL2.40ch11:1080169..1085490+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q93YF3_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000422g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|392; (*GB) gi|400639|sp|P15688.2|NU2M_BETVU (e_value=5e-144) RecName: Full=NADH-ubiquinone oxidoreductase chain 2; AltName: Full=NADH dehydrogenase subunit 2;; (*SWP) sp|P15688|NU2M_BETVU (e_value=1e-145) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*TAIR) AT2G07689.1 (e_value=1e-131) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00014704g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|5|76|270; (*GB) gi|1346736|sp|P49173.1|NIP1_NICAL (e_value=0.0) RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein;; (*SWP) sp|P49173|NIP1_NICAL (e_value=0.0) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37820.1 (e_value=1e-131) | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein 4;2 | chr5:15050261-15051542 FORWARD LENGTH=283;; (*ITAG) Solyc02g091420.2.1 (e_value=6e-157) genomic_reference:SL2.40ch02 gene_region:47291512-47293127 transcript_region:SL2.40ch02:47291512..47293127- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00014704g0009.1 protein AED:0.18 eAED:0.23 QI:0|0.8|0.75|1|0.73|0.81|16|0|674; (*GB) gi|359488197|ref|XP_002271823.2| (e_value=0.0) PREDICTED: protease Do-like 7-like [Vitis vinifera];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=0.0) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=0.0) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc02g091410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47268452-47288648 transcript_region:SL2.40ch02:47268452..47288648- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00030754g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|681; (*GB) gi|224072093|ref|XP_002303623.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SUQ3|Y4374_ARATH (e_value=0.0) Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1;; (*TAIR) AT4G23740.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:12367063-12369159 FORWARD LENGTH=638;; (*ITAG) Solyc08g081940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62017281-62021205 transcript_region:SL2.40ch08:62017281..62021205+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00030754g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.88|0.9|1|0.77|0.7|10|536|301; (*GB) gi|255537695|ref|XP_002509914.1| (e_value=2e-175) aldose 1-epimerase, putative [Ricinus communis];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=6e-136) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT4G23730.1 (e_value=7e-163) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00030754g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|6|0|197; (*GB) gi|356516007|ref|XP_003526688.1| (e_value=5e-60) PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max];; (*SWP) sp|P35132|UBC9_ARATH (e_value=4e-60) SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1;; (*TAIR) AT4G27960.1 (e_value=3e-61) | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | chr4:13916065-13917203 REVERSE LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=3e-62) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00010780g0014.1 protein AED:0.18 eAED:0.20 QI:17|1|0.6|1|0.5|0.6|5|0|277; (*GB) gi|147776011|emb|CAN71371.1| (e_value=6e-99) hypothetical protein VITISV_023352 [Vitis vinifera];; (*SWP) sp|Q9LUE3|SWT10_ARATH (e_value=1e-83) Bidirectional sugar transporter SWEET10 OS=Arabidopsis thaliana GN=SWEET10 PE=2 SV=1;; (*TAIR) AT5G50790.1 (e_value=9e-85) | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family protein | chr5:20656461-20657827 REVERSE LENGTH=289;; (*ITAG) Solyc03g097560.2.1 (e_value=4e-148) genomic_reference:SL2.40ch03 gene_region:53339881-53341894 transcript_region:SL2.40ch03:53339881..53341894- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- B4FBY7_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00010780g0013.1 protein AED:0.39 eAED:0.42 QI:0|0.90|0.75|1|0.27|0.58|12|0|391; (*GB) gi|359491112|ref|XP_003634223.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 7-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q0E0Y3|PUS7_ORYSJ (e_value=1e-175) RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2;; (*TAIR) AT5G51140.1 (e_value=1e-167) | Symbols: | Pseudouridine synthase family protein | chr5:20784277-20786793 REVERSE LENGTH=395;; (*ITAG) Solyc03g097550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53324402-53332524 transcript_region:SL2.40ch03:53324402..53332524+ go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451,GO:0003723 NbS00030879g0008.1 protein AED:0.02 eAED:0.02 QI:154|1|1|1|0.85|0.75|8|4891|621; (*GB) gi|356525090|ref|XP_003531160.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Glycine max];; (*SWP) sp|P58223|Y4837_ARATH (e_value=2e-180) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G46190.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:18723435-18725834 REVERSE LENGTH=644;; (*ITAG) Solyc08g048500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:40542913-40547835 transcript_region:SL2.40ch08:40542913..40547835+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00037143g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|343; (*GB) gi|147774750|emb|CAN65915.1| (e_value=0.0) hypothetical protein VITISV_000065 [Vitis vinifera];; (*SWP) sp|Q940G6|GID1C_ARATH (e_value=0.0) Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1;; (*TAIR) AT5G27320.1 (e_value=0.0) | Symbols: ATGID1C, GID1C | alpha/beta-Hydrolases superfamily protein | chr5:9629254-9630746 FORWARD LENGTH=344;; (*ITAG) Solyc01g098390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80677748-80680126 transcript_region:SL2.40ch01:80677748..80680126+ go_terms:GO:0008152 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00059934g0003.1 protein AED:0.15 eAED:0.15 QI:113|0.5|0.66|1|1|1|3|80|197; (*GB) gi|4027895|gb|AAC96079.1| (e_value=1e-105) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q7XWU8|EXPA1_ORYSJ (e_value=8e-83) Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2;; (*TAIR) AT1G20190.1 (e_value=8e-76) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc12g089380.1.1 (e_value=7e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62933298-62935296 transcript_region:SL2.40ch12:62933298..62935296- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00004801g0012.1 protein AED:0.23 eAED:0.24 QI:9|0.75|0.66|0.88|0.62|0.77|9|276|483; (*GB) gi|356574920|ref|XP_003555591.1| (e_value=0.0) PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Glycine max];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=9e-172) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT3G05140.1 (e_value=7e-173) | Symbols: RBK2 | ROP binding protein kinases 2 | chr3:1435817-1437800 REVERSE LENGTH=460;; (*ITAG) Solyc01g098440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80719926-80724116 transcript_region:SL2.40ch01:80719926..80724116- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00004801g0002.1 protein AED:0.26 eAED:0.30 QI:0|0|0|1|1|1|4|0|769; (*GB) gi|255579013|ref|XP_002530358.1| (e_value=1e-121) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G18310.1 (e_value=2e-72) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6284523-6287144 REVERSE LENGTH=873;; (*ITAG) Solyc01g098450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80732427-80735316 transcript_region:SL2.40ch01:80732427..80735316+ functional_description:"Genomic DNA chromosome 3 P1 clone MYF24 (AHRD V1 ***- Q9LS59_ARATH)"; NbS00019631g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.4|0.33|1|1|1|6|0|816; (*GB) gi|225439442|ref|XP_002264659.1| (e_value=0.0) PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6DW74|DGDG1_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1;; (*TAIR) AT3G11670.1 (e_value=0.0) | Symbols: DGD1 | UDP-Glycosyltransferase superfamily protein | chr3:3681090-3684495 REVERSE LENGTH=808;; (*ITAG) Solyc10g081900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62163625-62169893 transcript_region:SL2.40ch10:62163625..62169893- go_terms:GO:0009058 functional_description:"Digalactosyldiacylglycerol synthase 1, chloroplastic (AHRD V1 ***- DGDG1_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00018442g0014.1 protein AED:0.07 eAED:0.07 QI:143|0.8|0.83|1|0.6|0.5|6|411|307; (*GB) gi|225457658|ref|XP_002275562.1| (e_value=2e-147) PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Vitis vinifera];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=3e-68) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G33590.1 (e_value=3e-132) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14224622-14226365 FORWARD LENGTH=321;; (*ITAG) Solyc04g082780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63922431-63926074 transcript_region:SL2.40ch04:63922431..63926074- go_terms:GO:0016621,GO:0004022 functional_description:"Cinnamoyl CoA reductase-like 1 (AHRD V1 **** D2IX48_9POAL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621,GO:0004022 NbS00018442g0013.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.5|0.83|0.8|0.83|6|0|283; (*GB) gi|224061829|ref|XP_002300619.1| (e_value=3e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|P51110|DFRA_VITVI (e_value=2e-47) Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1;; (*TAIR) AT2G33590.1 (e_value=1e-104) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14224622-14226365 FORWARD LENGTH=321;; (*ITAG) Solyc04g082780.2.1 (e_value=2e-146) genomic_reference:SL2.40ch04 gene_region:63922431-63926074 transcript_region:SL2.40ch04:63922431..63926074- go_terms:GO:0016621,GO:0004022 functional_description:"Cinnamoyl CoA reductase-like 1 (AHRD V1 **** D2IX48_9POAL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621,GO:0004022 NbS00018442g0012.1 protein AED:0.48 eAED:0.52 QI:0|0.6|0.5|0.83|0.8|0.83|6|0|201; (*GB) gi|359491921|ref|XP_002273353.2| (e_value=2e-89) PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera];; (*SWP) sp|Q6GQD3|RB24A_XENLA (e_value=1e-34) RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1;; (*TAIR) AT1G76460.1 (e_value=8e-77) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28686932-28688506 REVERSE LENGTH=285;; (*ITAG) Solyc04g082770.2.1 (e_value=2e-103) genomic_reference:SL2.40ch04 gene_region:63917694-63921381 transcript_region:SL2.40ch04:63917694..63921381- go_terms:GO:0008266 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00029223g0002.1 protein AED:0.10 eAED:0.10 QI:180|0.87|0.77|1|1|1|9|252|303; (*GB) gi|78191430|gb|ABB29936.1| (e_value=1e-63) deacetylase-like protein [Solanum tuberosum];; (*SWP) sp|Q9FVE6|HDT1_ARATH (e_value=1e-31) Histone deacetylase HDT1 OS=Arabidopsis thaliana GN=HDT1 PE=1 SV=1;; (*TAIR) AT3G44750.2 (e_value=1e-32) | Symbols: HDA3 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=242;; (*ITAG) Solyc11g066840.1.1 (e_value=9e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49732490-49734800 transcript_region:SL2.40ch11:49732490..49734800- functional_description:"Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU)"; NbS00033153g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|598; (*GB) gi|224134082|ref|XP_002327751.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66200.1 (e_value=0.0) | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453648-26455603 REVERSE LENGTH=651;; (*ITAG) Solyc02g062140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28287621-28290137 transcript_region:SL2.40ch02:28287621..28290137- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 ***- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00033153g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|337; (*GB) gi|167614481|gb|ABZ89800.1| (e_value=3e-98) pectin methylesterase-like protein [Taiwania cryptomerioides];; (*SWP) sp|Q1JPL7|PME18_ARATH (e_value=1e-95) Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3;; (*TAIR) AT1G11580.1 (e_value=1e-96) | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557;; (*ITAG) Solyc02g062150.1.1 (e_value=3e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28293893-28296506 transcript_region:SL2.40ch02:28293893..28296506- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00033153g0005.1 protein AED:0.18 eAED:0.33 QI:0|0|0|0.4|1|1|5|0|238; (*GB) gi|225431118|ref|XP_002265925.1| (e_value=2e-47) PREDICTED: thaumatin-like protein 1a [Vitis vinifera];; (*SWP) sp|P28493|PR5_ARATH (e_value=4e-30) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT4G36010.2 (e_value=4e-43) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:17039472-17040976 REVERSE LENGTH=301;; (*ITAG) Solyc02g083790.2.1 (e_value=4e-59) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00021285g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|224120976|ref|XP_002318466.1| (e_value=1e-79) predicted protein [Populus trichocarpa];; (*TAIR) AT1G57680.2 (e_value=4e-15) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362;; (*ITAG) Solyc06g053230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32451213-32457177 transcript_region:SL2.40ch06:32451213..32457177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061413g0004.1 protein AED:0.14 eAED:0.14 QI:631|0.6|0.63|1|0.6|0.72|11|341|533; (*GB) gi|356513463|ref|XP_003525433.1| (e_value=3e-64) PREDICTED: auxin response factor 2-like [Glycine max];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=4e-62) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=3e-63) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc01g103050.2.1 (e_value=3e-64) genomic_reference:SL2.40ch01 gene_region:83494825-83500792 transcript_region:SL2.40ch01:83494825..83500792+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 1 (AHRD V1 **** D9I2J0_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005515,GO:0003700 NbS00031084g0005.1 protein AED:0.17 eAED:0.18 QI:28|1|0.5|1|1|0.75|4|0|558; (*GB) gi|255585982|ref|XP_002533661.1| (e_value=3e-64) hypothetical protein RCOM_0152200 [Ricinus communis];; (*TAIR) AT3G52240.1 (e_value=3e-35) | Symbols: | unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:19372902-19375799 REVERSE LENGTH=680;; (*ITAG) Solyc05g055360.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64185938-64190195 transcript_region:SL2.40ch05:64185938..64190195+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022341g0001.1 protein AED:0.18 eAED:0.20 QI:0|0.66|0.5|1|1|1|4|134|557; (*GB) gi|224082598|ref|XP_002306758.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28D01|WDR26_XENTR (e_value=6e-86) WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2;; (*TAIR) AT5G08560.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00022341g0013.1 protein AED:0.48 eAED:0.58 QI:0|0|0|1|0|0|3|0|100; (*ITAG) Solyc04g051530.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49923952-49924691 transcript_region:SL2.40ch04:49923952..49924691- go_terms:GO:0005515,GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0005515,GO:0008270 NbS00022341g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|87; (*ITAG) Solyc08g016290.1.1 (e_value=8e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00022341g0014.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|65 NbS00032079g0004.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|225441002|ref|XP_002283652.1| (e_value=8e-96) PREDICTED: peroxiredoxin-2E, chloroplastic [Vitis vinifera];; (*SWP) sp|Q949U7|PRX2E_ARATH (e_value=5e-85) Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2;; (*TAIR) AT3G52960.1 (e_value=4e-86) | Symbols: | Thioredoxin superfamily protein | chr3:19639699-19640403 FORWARD LENGTH=234;; (*ITAG) Solyc10g083650.1.1 (e_value=3e-112) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62763114-62763800 transcript_region:SL2.40ch10:62763114..62763800- go_terms:GO:0016491,GO:0045454 functional_description:"Peroxiredoxin ahpC/TSA family (AHRD V1 **-- Q1YGN4_MOBAS); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00027536g0004.1 protein AED:0.23 eAED:0.24 QI:0|0.8|0.5|1|0.8|1|6|0|412; (*GB) gi|255538386|ref|XP_002510258.1| (e_value=4e-119) Patatin T5 precursor, putative [Ricinus communis];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=6e-75) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=8e-110) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079250.2.1 (e_value=2e-106) genomic_reference:SL2.40ch04 gene_region:61361989-61363939 transcript_region:SL2.40ch04:61361989..61363939- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00027924g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|0|0|2|0|256; (*GB) gi|302142054|emb|CBI19257.3| (e_value=2e-44) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=6e-33) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=5e-34) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc04g014360.2.1 (e_value=1e-121) genomic_reference:SL2.40ch04 gene_region:4614412-4616761 transcript_region:SL2.40ch04:4614412..4616761- go_terms:GO:0003700 functional_description:"Transcription factor SPATULA (AHRD V1 *-** SPT_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00027924g0015.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.5|2|0|109 NbS00027924g0021.1 protein AED:0.31 eAED:0.31 QI:100|1|1|1|0.6|0.66|6|203|348; (*GB) gi|297735770|emb|CBI18457.3| (e_value=6e-126) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CIB9|ESCO2_MOUSE (e_value=3e-30) N-acetyltransferase ESCO2 OS=Mus musculus GN=Esco2 PE=2 SV=3;; (*TAIR) AT4G31400.1 (e_value=6e-99) | Symbols: CTF7 | damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345;; (*ITAG) Solyc01g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1728460-1733199 transcript_region:SL2.40ch01:1728460..1733199+ go_terms:GO:0006281 functional_description:"N-acetyltransferase ESCO1 (AHRD V1 **-- B6TTW6_MAIZE); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0006281 NbS00027924g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc04g014280.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4587842-4588132 transcript_region:SL2.40ch04:4587842..4588132- functional_description:"Unknown Protein (AHRD V1)"; NbS00027924g0024.1 protein AED:0.10 eAED:0.19 QI:0|0|0|1|0|0.33|3|0|127 NbS00010835g0002.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.5|1|1|1|6|211|530; (*GB) gi|255555051|ref|XP_002518563.1| (e_value=1e-128) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|O65468|CRK8_ARATH (e_value=1e-75) Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2;; (*TAIR) AT4G23180.1 (e_value=1e-76) | Symbols: CRK10, RLK4 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10 | chr4:12138171-12140780 FORWARD LENGTH=669;; (*ITAG) Solyc02g080070.2.1 (e_value=2e-123) genomic_reference:SL2.40ch02 gene_region:38960023-38964200 transcript_region:SL2.40ch02:38960023..38964200- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00011594g0003.1 protein AED:0.08 eAED:0.08 QI:535|1|0.9|1|0.66|0.5|10|327|297; (*GB) gi|350538979|ref|NP_001234112.1| (e_value=0.0) shikimate kinase, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q00497|AROK_SOLLC (e_value=0.0) Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G21940.4 (e_value=4e-108) | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304;; (*ITAG) Solyc04g051860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50314366-50320348 transcript_region:SL2.40ch04:50314366..50320348+ go_terms:GO:0005515,GO:0004765 functional_description:"Shikimate kinase (AHRD V1 **** B9VU88_VITVI); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005515,GO:0004765 NbS00000498g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|170; (*GB) gi|334902911|gb|AEH25587.1| (e_value=4e-28) transposase [Solanum demissum];; (*ITAG) Solyc04g039710.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00011553g0003.1 protein AED:0.19 eAED:0.19 QI:78|0.66|0.25|1|1|1|4|0|95; (*GB) gi|242040781|ref|XP_002467785.1| (e_value=5e-26) hypothetical protein SORBIDRAFT_01g034020 [Sorghum bicolor];; (*SWP) sp|B3H6K1|Y4791_ARATH (e_value=2e-23) Uncharacterized protein At4g17910 OS=Arabidopsis thaliana GN=At4g17910 PE=2 SV=2;; (*TAIR) AT4G17910.1 (e_value=1e-24) | Symbols: | transferases, transferring acyl groups | chr4:9951322-9953689 REVERSE LENGTH=434;; (*ITAG) Solyc08g076810.2.1 (e_value=8e-43) genomic_reference:SL2.40ch08 gene_region:57876899-57889537 transcript_region:SL2.40ch08:57876899..57889537+ go_terms:GO:0005515,GO:0032216 functional_description:"GPI-anchored wall transfer protein 1 (AHRD V1 ***- C4JY68_UNCRE); contains Interpro domain(s) IPR009447 GWT1 "; GO:0005515,GO:0032216 NbS00038108g0001.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|225438797|ref|XP_002283187.1| (e_value=5e-160) PREDICTED: uncharacterized protein LOC100259508 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=1e-147) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc02g093090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48596619-48597545 transcript_region:SL2.40ch02:48596619..48597545- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00038108g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|0.5|0.33|3|124|363; (*GB) gi|337733638|gb|AEI72268.1| (e_value=3e-132) leucine-rich repeat family protein [Citrus trifoliata];; (*SWP) sp|Q8W3M4|Y4744_ARATH (e_value=1e-96) Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1;; (*TAIR) AT3G19320.1 (e_value=7e-123) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6696395-6698073 REVERSE LENGTH=493;; (*ITAG) Solyc02g064940.1.1 (e_value=7e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:30624387-30625781 transcript_region:SL2.40ch02:30624387..30625781+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00000328g0015.1 protein AED:0.07 eAED:0.07 QI:163|0.7|0.90|0.90|0.9|0.90|11|349|400; (*GB) gi|356496629|ref|XP_003517168.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max];; (*SWP) sp|P55034|PSMD4_ARATH (e_value=3e-134) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1;; (*TAIR) AT4G38630.1 (e_value=2e-135) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386;; (*ITAG) Solyc02g083710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00000328g0016.1 protein AED:0.23 eAED:0.23 QI:486|0.75|0.6|1|0.5|0.4|5|0|151; (*GB) gi|221164121|gb|ACM07419.1| (e_value=3e-83) Rac/Rop-like small GTPase [Scoparia dulcis];; (*SWP) sp|Q35638|RHO1_PEA (e_value=9e-85) Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1;; (*TAIR) AT3G51300.1 (e_value=8e-86) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g083580.2.1 (e_value=1e-85) genomic_reference:SL2.40ch02 gene_region:41510800-41514068 transcript_region:SL2.40ch02:41510800..41514068- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00000328g0017.1 protein AED:0.08 eAED:0.28 QI:87|0|0|1|0.25|0.4|5|0|330; (*GB) gi|255577530|ref|XP_002529643.1| (e_value=6e-109) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51280.1 (e_value=9e-80) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19037229-19038781 FORWARD LENGTH=430;; (*ITAG) Solyc02g083640.2.1 (e_value=1e-137) genomic_reference:SL2.40ch02 gene_region:41548650-41550974 transcript_region:SL2.40ch02:41548650..41550974- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *-*- B1Q3A0_BRACM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbC25965424g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|146; (*GB) gi|365818545|gb|AEX00361.1| (e_value=1e-70) IAA19 [Solanum lycopersicum];; (*SWP) sp|P13088|AUX22_SOYBN (e_value=1e-55) Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1;; (*TAIR) AT3G15540.1 (e_value=8e-43) | Symbols: IAA19, MSG2 | indole-3-acetic acid inducible 19 | chr3:5264100-5265378 FORWARD LENGTH=197;; (*ITAG) Solyc03g120380.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:62855821-62857611 transcript_region:SL2.40ch03:62855821..62857611+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00001549g0018.1 protein AED:0.14 eAED:0.17 QI:0|0|0|0.66|0.25|0.33|9|0|758; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=4e-61) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=4e-41) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=3e-19) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc10g008240.2.1 (e_value=4e-102) genomic_reference:SL2.40ch10 gene_region:2346611-2349504 transcript_region:SL2.40ch10:2346611..2349504+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00001549g0011.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|159; (*GB) gi|255542560|ref|XP_002512343.1| (e_value=9e-23) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=2e-22) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=2e-23) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc03g112340.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00001549g0019.1 protein AED:0.15 eAED:0.15 QI:151|0.81|0.83|1|0.54|0.5|12|614|413; (*GB) gi|238886097|gb|ACR77530.1| (e_value=0.0) adenylyl cyclase [Nicotiana benthamiana];; (*TAIR) AT3G21465.1 (e_value=9e-135) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7560750-7563202 FORWARD LENGTH=388;; (*ITAG) Solyc07g041930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00001549g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.8|1|1|1|5|182|280; (*GB) gi|350537475|ref|NP_001234039.1| (e_value=8e-125) expressed predominantly in leaves [Solanum lycopersicum];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=3e-26) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=2e-93) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc02g078500.2.1 (e_value=6e-141) genomic_reference:SL2.40ch02 gene_region:37743413-37745908 transcript_region:SL2.40ch02:37743413..37745908+ functional_description:"Aluminum-induced protein-like (AHRD V1 ***- Q9FG81_ARATH)"; NbS00001549g0015.1 protein AED:0.40 eAED:0.38 QI:122|0.77|0.68|0.94|0.44|0.57|19|219|549; (*GB) gi|359497050|ref|XP_002267854.2| (e_value=2e-139) PREDICTED: splicing factor U2af large subunit B-like, partial [Vitis vinifera];; (*SWP) sp|Q8L716|U2A2B_ARATH (e_value=3e-121) Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2;; (*TAIR) AT1G60900.1 (e_value=2e-122) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc02g085570.2.1 (e_value=3e-126) genomic_reference:SL2.40ch02 gene_region:42978856-42984886 transcript_region:SL2.40ch02:42978856..42984886+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00001549g0017.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|0|0|3|0|101; (*GB) gi|24745601|dbj|BAC23030.1| (e_value=2e-24) ring H2 zinc finger [Solanum tuberosum];; (*ITAG) Solyc03g112340.1.1 (e_value=6e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00015817g0016.1 protein AED:0.11 eAED:0.11 QI:236|1|1|1|1|1|3|297|158; (*GB) gi|255558816|ref|XP_002520431.1| (e_value=1e-80) acyl-CoA thioesterase, putative [Ricinus communis];; (*SWP) sp|Q5R833|ACO13_PONAB (e_value=8e-17) Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1;; (*TAIR) AT2G29590.1 (e_value=2e-59) | Symbols: | Thioesterase superfamily protein | chr2:12654602-12655432 REVERSE LENGTH=158;; (*ITAG) Solyc06g076690.2.1 (e_value=2e-102) genomic_reference:SL2.40ch06 gene_region:44008390-44012037 transcript_region:SL2.40ch06:44008390..44012037- go_terms:GO:0016291,GO:0042802 functional_description:"Acyl-coenzyme A thioesterase 13 (AHRD V1 **** ACO13_MOUSE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00015817g0018.1 protein AED:0.14 eAED:0.16 QI:0|0.4|0.33|1|0.4|0.33|6|0|649; (*GB) gi|356539537|ref|XP_003538254.1| (e_value=0.0) PREDICTED: peptide transporter PTR1-like [Glycine max];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=0.0) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=0.0) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc06g076750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44048734-44052728 transcript_region:SL2.40ch06:44048734..44052728- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00015817g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|147856803|emb|CAN79179.1| (e_value=2e-48) hypothetical protein VITISV_016730 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=5e-31) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT5G04110.1 (e_value=1e-36) | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112 REVERSE LENGTH=546;; (*ITAG) Solyc06g076710.1.1 (e_value=8e-87) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:44018458-44020445 transcript_region:SL2.40ch06:44018458..44020445- functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR000949 ELM2 "; NbS00015817g0020.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|0|0.25|4|0|190; (*GB) gi|255558816|ref|XP_002520431.1| (e_value=9e-44) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT2G29590.1 (e_value=1e-24) | Symbols: | Thioesterase superfamily protein | chr2:12654602-12655432 REVERSE LENGTH=158;; (*ITAG) Solyc06g076690.2.1 (e_value=2e-55) genomic_reference:SL2.40ch06 gene_region:44008390-44012037 transcript_region:SL2.40ch06:44008390..44012037- go_terms:GO:0016291,GO:0042802 functional_description:"Acyl-coenzyme A thioesterase 13 (AHRD V1 **** ACO13_MOUSE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00015817g0013.1 protein AED:0.70 eAED:0.90 QI:0|0|0|0.4|1|1|5|0|115 NbS00015817g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|641; (*GB) gi|147856802|emb|CAN79178.1| (e_value=3e-76) hypothetical protein VITISV_016729 [Vitis vinifera];; (*SWP) sp|Q9SS80|U503A_ARATH (e_value=7e-21) UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1;; (*TAIR) AT2G38070.1 (e_value=1e-37) | Symbols: | Protein of unknown function (DUF740) | chr2:15928737-15930596 FORWARD LENGTH=619;; (*ITAG) Solyc06g076700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44014596-44016497 transcript_region:SL2.40ch06:44014596..44016497+ functional_description:"UPF0503 protein At3g09070, chloroplastic (AHRD V1 *-*- U503A_ARATH); contains Interpro domain(s) IPR008004 Protein of unknown function DUF740 "; NbS00044191g0006.1 protein AED:0.26 eAED:0.26 QI:218|0.66|0.5|1|1|1|4|0|587; (*GB) gi|359484596|ref|XP_002281155.2| (e_value=5e-134) PREDICTED: uncharacterized protein LOC100266187 [Vitis vinifera];; (*TAIR) AT3G22440.1 (e_value=3e-69) | Symbols: | FRIGIDA-like protein | chr3:7959854-7961886 FORWARD LENGTH=532;; (*ITAG) Solyc11g071340.1.1 (e_value=4e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51937363-51942097 transcript_region:SL2.40ch11:51937363..51942097- functional_description:"ABI3-interacting protein 2 (Fragment) (AHRD V1 *-*- A7Y4P0_PINSY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00044191g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|67 NbS00044191g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|94 NbS00018726g0013.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.5|4|0|334; (*GB) gi|134303286|gb|ABO70986.1| (e_value=0.0) gibberellin 2-oxidase 5 [Nicotiana tabacum];; (*SWP) sp|Q9XG83|G2OX_PHACN (e_value=5e-143) Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1;; (*TAIR) AT1G30040.1 (e_value=2e-139) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc08g016660.1.1 (e_value=5e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:8270177-8272319 transcript_region:SL2.40ch08:8270177..8272319+ go_terms:GO:0016491,GO:0055114 functional_description:"Gibberellin 2-oxidase 5 (AHRD V1 ***- A4URE9_TOBAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00018726g0012.1 protein AED:0.18 eAED:0.21 QI:131|0.72|0.66|1|0.63|0.66|12|207|410; (*GB) gi|359483871|ref|XP_002276286.2| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera];; (*SWP) sp|A0JMA9|KATL2_XENTR (e_value=2e-111) Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1;; (*TAIR) AT2G34560.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14560266-14562695 FORWARD LENGTH=393;; (*ITAG) Solyc02g070440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34752452-34759726 transcript_region:SL2.40ch02:34752452..34759726+ go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit A (AHRD V1 **-* D0P3C9_PHYIN); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00036893g0011.1 protein AED:0.23 eAED:0.23 QI:137|1|0.85|1|0.66|0.85|7|0|278; (*GB) gi|356502904|ref|XP_003520254.1| (e_value=2e-106) PREDICTED: UPF0760 protein C2orf29-like [Glycine max];; (*SWP) sp|A4QP78|CB029_DANRE (e_value=4e-12) UPF0760 protein C2orf29 homolog OS=Danio rerio GN=zgc:163002 PE=2 SV=1;; (*TAIR) AT5G18420.2 (e_value=1e-85) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 233 Blast hits to 233 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr5:6105638-6109337 REVERSE LENGTH=442;; (*ITAG) Solyc04g024500.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:12989357-12998283 transcript_region:SL2.40ch04:12989357..12998283+ functional_description:"UPF0760 protein C2orf29 homolog (AHRD V1 ***- CB029_DANRE)"; NbS00036893g0010.1 protein AED:0.37 eAED:0.52 QI:0|0.8|0.5|1|1|1|6|0|213; (*GB) gi|225463179|ref|XP_002269851.1| (e_value=1e-95) PREDICTED: UPF0760 protein C2orf29-like [Vitis vinifera];; (*SWP) sp|Q9UKZ1|CB029_HUMAN (e_value=2e-87) UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1;; (*TAIR) AT5G18420.1 (e_value=1e-85) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6105638-6109337 REVERSE LENGTH=441;; (*ITAG) Solyc04g024510.2.1 (e_value=3e-109) genomic_reference:SL2.40ch04 gene_region:13007046-13009803 transcript_region:SL2.40ch04:13007046..13009803+ functional_description:"UPF0760 protein C2orf29 homolog (AHRD V1 **-- CB029_MOUSE); contains Interpro domain(s) IPR019312 Protein of unknown function DUF2363 "; NbS00023865g0016.1 protein AED:0.15 eAED:0.15 QI:206|0.75|0.77|1|0.5|0.44|9|0|298; (*GB) gi|118486233|gb|ABK94958.1| (e_value=7e-138) unknown [Populus trichocarpa];; (*SWP) sp|Q9Y259|CHKB_HUMAN (e_value=9e-47) Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3;; (*TAIR) AT1G74320.1 (e_value=2e-132) | Symbols: | Protein kinase superfamily protein | chr1:27941192-27942903 FORWARD LENGTH=350;; (*ITAG) Solyc02g069750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34139654-34148857 transcript_region:SL2.40ch02:34139654..34148857- go_terms:GO:0004103 functional_description:"Choline/ethanolamine kinase (AHRD V1 **** B6TU35_MAIZE); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004103 NbS00023865g0013.1 protein AED:0.08 eAED:0.08 QI:328|0.91|0.92|1|0.83|0.76|13|164|972; (*GB) gi|356528420|ref|XP_003532801.1| (e_value=0.0) PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=0.0) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G30810.2 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:10938139-10941505 REVERSE LENGTH=819;; (*ITAG) Solyc02g069740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34130140-34138107 transcript_region:SL2.40ch02:34130140..34138107+ go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--- KDM5B_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00023865g0014.1 protein AED:0.14 eAED:0.16 QI:0|1|0.33|1|1|1|3|0|215; (*GB) gi|356556491|ref|XP_003546558.1| (e_value=2e-59) PREDICTED: CASP-like protein 9-like [Glycine max];; (*SWP) sp|B9SV63|CSPLC_RICCO (e_value=1e-58) CASP-like protein RCOM_0770240 OS=Ricinus communis GN=RCOM_0770240 PE=2 SV=1;; (*TAIR) AT5G44550.1 (e_value=1e-53) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:17942100-17943174 REVERSE LENGTH=197;; (*ITAG) Solyc02g069730.2.1 (e_value=5e-86) genomic_reference:SL2.40ch02 gene_region:34122815-34124375 transcript_region:SL2.40ch02:34122815..34124375+ functional_description:"UPF0497 membrane protein 15 (AHRD V1 ***- U497F_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00023865g0015.1 protein AED:0.25 eAED:0.25 QI:421|1|1|1|0.71|0.62|8|385|170; (*GB) gi|388521485|gb|AFK48804.1| (e_value=5e-79) unknown [Lotus japonicus];; (*SWP) sp|Q6ASS2|LOL3_ORYSJ (e_value=9e-62) Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1;; (*TAIR) AT4G20380.7 (e_value=8e-58) | Symbols: LSD1 | LSD1 zinc finger family protein | chr4:11005012-11006438 FORWARD LENGTH=189;; (*ITAG) Solyc02g069720.2.1 (e_value=3e-85) genomic_reference:SL2.40ch02 gene_region:34117564-34122011 transcript_region:SL2.40ch02:34117564..34122011+ go_terms:GO:0003700 functional_description:"Zinc finger protein LSD1 (AHRD V1 **-- Q8W195_BRAOL); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; GO:0003700 NbS00029669g0007.1 protein AED:0.25 eAED:0.25 QI:458|0.5|1|1|0|0|3|392|39 NbS00029669g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|225442495|ref|XP_002278380.1| (e_value=5e-58) PREDICTED: uncharacterized protein LOC100254824 [Vitis vinifera];; (*TAIR) AT1G79770.1 (e_value=2e-39) | Symbols: | Protein of unknown function (DUF1677) | chr1:30014371-30014874 FORWARD LENGTH=167;; (*ITAG) Solyc06g066530.1.1 (e_value=1e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38172469-38173044 transcript_region:SL2.40ch06:38172469..38173044+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbC23243940g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|56; (*GB) gi|1162984|gb|AAA85473.1| (e_value=1e-16) beta-1 tubulin, partial [Lytechinus pictus];; (*SWP) sp|P04107|TBB_TRYBR (e_value=6e-17) Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1;; (*TAIR) AT1G75780.1 (e_value=2e-17) | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451378-28453602 REVERSE LENGTH=447;; (*ITAG) Solyc06g005910.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:898125-901266 transcript_region:SL2.40ch06:898125..901266+ go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9GWG9_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00032888g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|255547444|ref|XP_002514779.1| (e_value=4e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G16250.1 (e_value=1e-76) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183;; (*ITAG) Solyc11g008690.1.1 (e_value=8e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2874856-2875551 transcript_region:SL2.40ch11:2874856..2875551- functional_description:"TO23-3 (Fragment) (AHRD V1 *-*- Q3LVQ6_TAROF)"; NbS00032888g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|0.5|1|1|4|0|642; (*GB) gi|356529945|ref|XP_003533546.1| (e_value=0.0) PREDICTED: quinohaemoprotein ethanol dehydrogenase type-1-like [Glycine max];; (*ITAG) Solyc05g055650.2.1 (e_value=7e-124) genomic_reference:SL2.40ch05 gene_region:64356756-64358236 transcript_region:SL2.40ch05:64356756..64358236- functional_description:"Polyvinylalcohol dehydrogenase (AHRD V1 ***- D4T9G5_9XANT); contains Interpro domain(s) IPR011047 Quinonprotein alcohol dehydrogenase-like "; NbS00032888g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0|0.33|3|421|101; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=2e-42) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=5e-44) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=7e-40) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc05g055640.2.1 (e_value=3e-45) genomic_reference:SL2.40ch05 gene_region:64354473-64356655 transcript_region:SL2.40ch05:64354473..64356655+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0003735 NbS00001597g0011.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|397|136; (*GB) gi|62871468|gb|AAY18610.1| (e_value=4e-82) glutamyl-tRNA synthetase [Nicotiana benthamiana];; (*SWP) sp|Q43794|SYE_TOBAC (e_value=1e-80) Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G64050.1 (e_value=6e-53) | Symbols: ATERS, OVA3, ERS | glutamate tRNA synthetase | chr5:25630196-25633099 REVERSE LENGTH=570;; (*ITAG) Solyc01g112290.2.1 (e_value=6e-76) genomic_reference:SL2.40ch01 gene_region:90114267-90129540 transcript_region:SL2.40ch01:90114267..90129540+ go_terms:GO:0005515 functional_description:"Glutamyl-tRNA synthetase (AHRD V1 ***- Q52JJ5_NICBE); contains Interpro domain(s) IPR004527 Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial "; GO:0005515 NbS00001597g0016.1 protein AED:0.04 eAED:0.18 QI:0|1|0|1|1|0.5|2|0|223; (*GB) gi|297744440|emb|CBI37702.3| (e_value=1e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=8e-42) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.1 (e_value=6e-43) | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E | chr4:16836384-16839345 REVERSE LENGTH=710;; (*ITAG) Solyc01g112300.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:90130869-90137919 transcript_region:SL2.40ch01:90130869..90137919+ go_terms:GO:0016020,GO:0055085 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00001597g0014.1 protein AED:0.23 eAED:0.26 QI:289|0.66|0.7|1|0.55|0.8|10|0|394; (*GB) gi|62871468|gb|AAY18610.1| (e_value=0.0) glutamyl-tRNA synthetase [Nicotiana benthamiana];; (*SWP) sp|Q43794|SYE_TOBAC (e_value=0.0) Glutamate--tRNA ligase, chloroplastic/mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G64050.1 (e_value=0.0) | Symbols: ATERS, OVA3, ERS | glutamate tRNA synthetase | chr5:25630196-25633099 REVERSE LENGTH=570;; (*ITAG) Solyc01g112290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90114267-90129540 transcript_region:SL2.40ch01:90114267..90129540+ go_terms:GO:0005515 functional_description:"Glutamyl-tRNA synthetase (AHRD V1 ***- Q52JJ5_NICBE); contains Interpro domain(s) IPR004527 Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial "; GO:0005515 NbS00001597g0013.1 protein AED:0.36 eAED:0.36 QI:6|0|1|1|0|0.5|2|39|118; (*GB) gi|42571679|ref|NP_973930.1| (e_value=6e-22) GDSL esterase/lipase [Arabidopsis thaliana];; (*TAIR) AT1G28570.2 (e_value=1e-24) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr1:10041838-10044112 REVERSE LENGTH=317;; (*ITAG) Solyc01g099080.2.1 (e_value=5e-39) genomic_reference:SL2.40ch01 gene_region:81162285-81163935 transcript_region:SL2.40ch01:81162285..81163935- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45910 (AHRD V1 ***- GDL83_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00001597g0017.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|0|0|2|0|118; (*GB) gi|224123636|ref|XP_002330170.1| (e_value=7e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=1e-16) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=7e-18) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc01g099030.2.1 (e_value=7e-47) genomic_reference:SL2.40ch01 gene_region:81132598-81136508 transcript_region:SL2.40ch01:81132598..81136508- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00019333g0002.1 protein AED:0.06 eAED:0.11 QI:0|0|0|0.33|1|1|3|0|492; (*GB) gi|255574623|ref|XP_002528222.1| (e_value=0.0) UDP-glucuronate 5-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9M0B6|GAE1_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1;; (*TAIR) AT4G30440.1 (e_value=0.0) | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 | chr4:14881976-14883265 REVERSE LENGTH=429;; (*ITAG) Solyc07g006220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:1040113-1041390 transcript_region:SL2.40ch07:1040113..1041390- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 1 (AHRD V1 **** D7MBW0_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00023026g0009.1 protein AED:0.04 eAED:0.04 QI:144|1|1|1|0.75|0.6|5|694|116; (*GB) gi|224105969|ref|XP_002313998.1| (e_value=4e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0V8G2|GABP2_BOVIN (e_value=1e-19) GA-binding protein subunit beta-2 OS=Bos taurus GN=GABPB2 PE=2 SV=2;; (*TAIR) AT5G12320.1 (e_value=1e-48) | Symbols: | ankyrin repeat family protein | chr5:3982762-3983899 FORWARD LENGTH=144;; (*ITAG) Solyc04g008580.2.1 (e_value=5e-50) genomic_reference:SL2.40ch04 gene_region:2185454-2191242 transcript_region:SL2.40ch04:2185454..2191242- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain protein (AHRD V1 **-- C0R391_WOLWR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00023026g0008.1 protein AED:0.05 eAED:0.09 QI:0|0|0|1|0|0|3|0|699; (*GB) gi|225425981|ref|XP_002269531.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q66GP4|PP379_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana GN=At5g13770 PE=2 SV=1;; (*TAIR) AT5G13770.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:4445461-4447290 FORWARD LENGTH=609;; (*ITAG) Solyc04g008570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2182236-2184631 transcript_region:SL2.40ch04:2182236..2184631+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M5W2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017515g0011.1 protein AED:0.11 eAED:0.14 QI:18|0.7|0.45|1|0.9|1|11|0|2384; (*GB) gi|359472760|ref|XP_003631193.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera];; (*SWP) sp|Q8TDI0|CHD5_HUMAN (e_value=7e-162) Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1;; (*TAIR) AT5G44800.1 (e_value=0.0) | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr5:18083659-18092162 REVERSE LENGTH=2223;; (*ITAG) Solyc02g068560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33090650-33105873 transcript_region:SL2.40ch02:33090650..33105873- go_terms:GO:0005634,GO:0005524,GO:0008270,GO:0045449 functional_description:"Chromodomain helicase DNA binding protein 5 (AHRD V1 *--- A2A8L1_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005634,GO:0005524,GO:0008270,GO:0045449 NbS00017515g0012.1 protein AED:0.14 eAED:0.14 QI:159|1|1|1|0|0.5|2|40|149; (*GB) gi|359472762|ref|XP_002276140.2| (e_value=8e-27) PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Vitis vinifera];; (*SWP) sp|Q5UBY2|FRS1_ARATH (e_value=1e-19) Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1;; (*TAIR) AT4G19990.1 (e_value=7e-21) | Symbols: FRS1 | FAR1-related sequence 1 | chr4:10832848-10835389 FORWARD LENGTH=687;; (*ITAG) Solyc02g068550.1.1 (e_value=6e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33077956-33081226 transcript_region:SL2.40ch02:33077956..33081226- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 ***- FRS4_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00016233g0008.1 protein AED:0.21 eAED:0.24 QI:0|0.6|0.5|1|0.6|0.83|6|0|258; (*GB) gi|225461385|ref|XP_002284781.1| (e_value=1e-105) PREDICTED: lanC-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9NS86|LANC2_HUMAN (e_value=3e-38) LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1;; (*TAIR) AT1G52920.1 (e_value=1e-93) | Symbols: GCR2, GPCR | G protein coupled receptor | chr1:19709360-19711048 REVERSE LENGTH=410;; (*ITAG) Solyc07g063320.2.1 (e_value=8e-138) genomic_reference:SL2.40ch07 gene_region:63031841-63035109 transcript_region:SL2.40ch07:63031841..63035109+ go_terms:GO:0010427 functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; GO:0010427 NbS00016233g0007.1 protein AED:0.07 eAED:0.07 QI:215|1|1|1|1|1|7|194|941; (*GB) gi|224117222|ref|XP_002317512.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=3e-54) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT3G15470.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:5216630-5219868 REVERSE LENGTH=883;; (*ITAG) Solyc07g063330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63036296-63042050 transcript_region:SL2.40ch07:63036296..63042050- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7L4T9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00030975g0003.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|150; (*GB) gi|242062644|ref|XP_002452611.1| (e_value=2e-29) hypothetical protein SORBIDRAFT_04g029035 [Sorghum bicolor];; (*SWP) sp|Q8WWY3|PRP31_HUMAN (e_value=6e-20) U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2;; (*TAIR) AT1G60170.1 (e_value=2e-29) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485;; (*ITAG) Solyc08g078430.2.1 (e_value=1e-31) genomic_reference:SL2.40ch08 gene_region:59406043-59410273 transcript_region:SL2.40ch08:59406043..59410273- go_terms:GO:0005515,GO:0043021 functional_description:"Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal "; GO:0005515,GO:0043021 NbS00030975g0010.1 protein AED:0.13 eAED:0.13 QI:126|0.83|0.71|1|0.83|0.71|7|0|518; (*GB) gi|359493952|ref|XP_002282637.2| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 12-like [Vitis vinifera];; (*SWP) sp|Q9FH36|GAUTC_ARATH (e_value=0.0) Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1;; (*TAIR) AT5G54690.1 (e_value=0.0) | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase 12 | chr5:22219435-22221769 REVERSE LENGTH=535;; (*ITAG) Solyc07g064050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63566361-63569538 transcript_region:SL2.40ch07:63566361..63569538- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00030975g0009.1 protein AED:0.13 eAED:0.16 QI:0|0.62|0.44|0.88|0.62|0.44|9|331|979; (*GB) gi|225461122|ref|XP_002279886.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265881 [Vitis vinifera];; (*SWP) sp|Q9H6U6|BCAS3_HUMAN (e_value=1e-23) Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3;; (*TAIR) AT5G54730.1 (e_value=3e-151) | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE LENGTH=763;; (*ITAG) Solyc07g064060.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63571448-63578879 transcript_region:SL2.40ch07:63571448..63578879- functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00046906g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|255550908|ref|XP_002516502.1| (e_value=2e-66) Transcriptional factor TINY, putative [Ricinus communis];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=4e-56) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=3e-57) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g066660.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52686293-52686949 transcript_region:SL2.40ch08:52686293..52686949- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00026460g0015.1 protein AED:0.09 eAED:0.13 QI:72|0.92|0.86|1|0.85|0.86|15|0|709; (*GB) gi|225430654|ref|XP_002268225.1| (e_value=0.0) PREDICTED: protein PIR-like [Vitis vinifera];; (*SWP) sp|Q5S2C3|PIR_ARATH (e_value=0.0) Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2;; (*TAIR) AT5G18410.2 (e_value=0.0) | Symbols: PIR, KLK, PIR121, SRA1, PIRP | transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1282;; (*ITAG) Solyc11g013280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6186161-6211407 transcript_region:SL2.40ch11:6186161..6211407- functional_description:"Cytoplasmic FMR1 interacting protein 2 (AHRD V1 ***- A5A5E1_DANRE); contains Interpro domain(s) IPR008081 Cytoplasmic FMR1-interacting "; NbS00026460g0014.1 protein AED:0.18 eAED:0.18 QI:161|0.90|0.75|1|0.45|0.41|12|0|332; (*GB) gi|296085165|emb|CBI28660.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5S2C3|PIR_ARATH (e_value=0.0) Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2;; (*TAIR) AT5G18410.1 (e_value=0.0) | Symbols: PIR, KLK, PIR121, SRA1, PIRP, ATSRA1 | transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1283;; (*ITAG) Solyc11g013290.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:6217215-6227943 transcript_region:SL2.40ch11:6217215..6227943- functional_description:"Cytoplasmic FMR1 interacting protein 1 (Predicted) (AHRD V1 **-- D4A8H8_RAT); contains Interpro domain(s) IPR008081 Cytoplasmic FMR1-interacting "; NbS00026460g0016.1 protein AED:0.09 eAED:0.25 QI:0|0.57|0.25|1|0.42|0.5|8|0|305; (*GB) gi|225459475|ref|XP_002284399.1| (e_value=2e-121) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-31) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G38131.1 (e_value=1e-108) | Symbols: | O-fucosyltransferase family protein | chr1:14293392-14296020 REVERSE LENGTH=589;; (*ITAG) Solyc11g013270.1.1 (e_value=4e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6174328-6179893 transcript_region:SL2.40ch11:6174328..6179893- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00038529g0011.1 protein AED:0.35 eAED:0.35 QI:0|0.83|0.57|1|0.66|0.71|7|134|581; (*GB) gi|302143562|emb|CBI22123.3| (e_value=1e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PKG0|LARP1_HUMAN (e_value=5e-19) La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2;; (*TAIR) AT4G35890.1 (e_value=3e-49) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr4:16997433-17000410 FORWARD LENGTH=523;; (*ITAG) Solyc02g061960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28083055-28088915 transcript_region:SL2.40ch02:28083055..28088915+ functional_description:"La related protein-like (AHRD V1 *--- Q5NBG8_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00038529g0010.1 protein AED:0.22 eAED:0.22 QI:111|1|1|1|0.5|0.33|3|329|297; (*GB) gi|297734978|emb|CBI17340.3| (e_value=8e-94) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G02210.2 (e_value=6e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). | chr4:974320-975917 REVERSE LENGTH=439;; (*ITAG) Solyc02g061940.2.1 (e_value=1e-139) genomic_reference:SL2.40ch02 gene_region:28070020-28072459 transcript_region:SL2.40ch02:28070020..28072459- functional_description:"Os03g0643100 protein (Fragment) (AHRD V1 *--- Q0DQ23_ORYSJ)"; NbS00038529g0012.1 protein AED:0.38 eAED:0.43 QI:0|0|0|0.66|0|0|3|0|156; (*ITAG) Solyc02g092290.2.1 (e_value=4e-18) genomic_reference:SL2.40ch02 gene_region:47989385-47994458 transcript_region:SL2.40ch02:47989385..47994458+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein At5g02910 (AHRD V1 ***- FBL79_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00038529g0013.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.5|0|0|2|0|89; (*ITAG) Solyc01g065740.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00007581g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|1|1|6|0|502; (*GB) gi|157325530|ref|YP_001468308.1| (e_value=5e-136) photosystem I P700 chlorophyll a apoprotein A1 [Ipomoea purpurea];; (*SWP) sp|Q332X8|PSAA_LACSA (e_value=3e-136) Photosystem I P700 chlorophyll a apoprotein A1 OS=Lactuca sativa GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=4e-134) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc10g017890.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6075874-6078763 transcript_region:SL2.40ch10:6075874..6078763+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein (AHRD V1 ***- B9RL07_RICCO); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00007581g0009.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|2|0|169; (*GB) gi|242087489|ref|XP_002439577.1| (e_value=1e-28) hypothetical protein SORBIDRAFT_09g014016 [Sorghum bicolor];; (*SWP) sp|P93401|NU2M_OENBE (e_value=2e-24) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=4e-24) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g063510.1.1 (e_value=1e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:31980796-31981664 transcript_region:SL2.40ch03:31980796..31981664- functional_description:"Unknown Protein (AHRD V1)"; NbS00025550g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|224073736|ref|XP_002304148.1| (e_value=8e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XI29|Y1540_ARATH (e_value=3e-23) Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2;; (*TAIR) AT1G15400.2 (e_value=2e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:5296402-5296824 REVERSE LENGTH=140;; (*ITAG) Solyc03g116490.1.1 (e_value=1e-54) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59947442-59947813 transcript_region:SL2.40ch03:59947442..59947813+ functional_description:"Os05g0176300 protein (Fragment) (AHRD V1 *-*- C7J2W8_ORYSJ)"; NbS00025550g0014.1 protein AED:0.19 eAED:0.19 QI:186|0.75|0.55|1|0.87|0.88|9|0|453; (*GB) gi|350536629|ref|NP_001234256.1| (e_value=0.0) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=1e-176) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT1G80170.1 (e_value=9e-178) | Symbols: | Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444;; (*ITAG) Solyc03g116500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59953511-59957819 transcript_region:SL2.40ch03:59953511..59957819+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00025550g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|317106740|dbj|BAJ53236.1| (e_value=3e-19) JHL06P13.17 [Jatropha curcas];; (*ITAG) Solyc03g116510.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59960022-59960303 transcript_region:SL2.40ch03:59960022..59960303+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025550g0013.1 protein AED:0.08 eAED:0.08 QI:188|1|1|1|1|1|3|166|178; (*GB) gi|255553127|ref|XP_002517606.1| (e_value=2e-96) lactoylglutathione lyase, putative [Ricinus communis];; (*TAIR) AT1G80160.1 (e_value=1e-91) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc03g116530.2.1 (e_value=6e-113) genomic_reference:SL2.40ch03 gene_region:59966079-59967384 transcript_region:SL2.40ch03:59966079..59967384- go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00024482g0010.1 protein AED:0.24 eAED:0.24 QI:34|0.77|0.6|1|0.44|0.8|10|532|589; (*GB) gi|359484370|ref|XP_002281316.2| (e_value=5e-140) PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera];; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=4e-16) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT4G13350.2 (e_value=9e-54) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602;; (*ITAG) Solyc12g006990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1421085-1429147 transcript_region:SL2.40ch12:1421085..1429147- go_terms:GO:0005525,GO:0003924 functional_description:"Arf GTPase activating protein (AHRD V1 *--* D3B391_POLPA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0005525,GO:0003924 NbS00024482g0011.1 protein AED:0.14 eAED:0.23 QI:0|0|0|1|0|0|5|0|762; (*GB) gi|224143492|ref|XP_002324974.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHF1|LRX4_ARATH (e_value=0.0) Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1;; (*TAIR) AT3G24480.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:8901154-8902638 REVERSE LENGTH=494;; (*ITAG) Solyc12g006980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1411568-1413751 transcript_region:SL2.40ch12:1411568..1413751+ go_terms:GO:0004675 functional_description:"Leucine-rich repeat receptor-like protein kinase PEPR2 (AHRD V1 *--* PEPR2_ARATH); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0004675 NbS00054666g0002.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|1|1|4|0|602; (*GB) gi|225459635|ref|XP_002285877.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267814 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8KEQ0|TOLB_CHLTE (e_value=3e-13) Protein TolB OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=tolB PE=3 SV=1;; (*TAIR) AT1G21680.1 (e_value=0.0) | Symbols: | DPP6 N-terminal domain-like protein | chr1:7613028-7615148 FORWARD LENGTH=706;; (*ITAG) Solyc11g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:67045-69072 transcript_region:SL2.40ch11:67045..69072+ functional_description:"Protein tolB (AHRD V1 *-*- D5MJZ0_9BACT); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00054666g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|195; (*GB) gi|255558612|ref|XP_002520331.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G77400.1 (e_value=2e-16) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:29085881-29086579 FORWARD LENGTH=232;; (*ITAG) Solyc03g113480.1.1 (e_value=3e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:57664364-57664939 transcript_region:SL2.40ch03:57664364..57664939- functional_description:"Unknown Protein (AHRD V1)"; NbS00054666g0018.1 protein AED:0.30 eAED:0.31 QI:0|0.81|0.75|0.91|0.72|0.83|12|0|348; (*GB) gi|255558610|ref|XP_002520330.1| (e_value=0.0) replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis];; (*SWP) sp|Q99J62|RFC4_MOUSE (e_value=9e-128) Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1;; (*TAIR) AT1G21690.1 (e_value=0.0) | Symbols: EMB1968, RFC4 | ATPase family associated with various cellular activities (AAA) | chr1:7615675-7618362 FORWARD LENGTH=339;; (*ITAG) Solyc11g012820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5605038-5616472 transcript_region:SL2.40ch11:5605038..5616472+ go_terms:GO:0005663,GO:0005524,GO:0017111,GO:0006260 functional_description:"Replication factor C subunit 2 (AHRD V1 ***- B6T4T0_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0005663,GO:0005524,GO:0017111,GO:0006260 NbS00054666g0007.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|445; (*GB) gi|225456224|ref|XP_002279168.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Vitis vinifera];; (*SWP) sp|Q1PFC5|PP130_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1;; (*TAIR) AT1G77405.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29087145-29088521 FORWARD LENGTH=458;; (*ITAG) Solyc08g029150.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:22827081-22828361 transcript_region:SL2.40ch08:22827081..22828361+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054666g0003.1 protein AED:0.14 eAED:0.14 QI:100|0.9|0.81|1|0.9|0.72|11|350|415; (*GB) gi|1064929|emb|CAA63543.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q9C6Y3|CCA11_ARATH (e_value=3e-153) Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1;; (*TAIR) AT1G44110.1 (e_value=2e-154) | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16775035-16777182 REVERSE LENGTH=460;; (*ITAG) Solyc11g005090.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:69680-73275 transcript_region:SL2.40ch11:69680..73275- go_terms:GO:0005634 functional_description:"Cyclin A1 (AHRD V1 ***- Q9XGI5_SOLLC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00062117g0002.1 protein AED:0.30 eAED:0.67 QI:0|0|0|0.33|0.4|0.5|6|0|201 NbS00003383g0019.1 protein AED:0.11 eAED:0.11 QI:207|0.83|0.84|1|0.58|0.53|13|445|435; (*GB) gi|224110276|ref|XP_002315469.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWC9|CIPK1_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2;; (*TAIR) AT3G17510.1 (e_value=0.0) | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein kinase 1 | chr3:5989309-5992627 REVERSE LENGTH=444;; (*ITAG) Solyc12g098910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64612490-64619100 transcript_region:SL2.40ch12:64612490..64619100+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 1 (AHRD V1 ***- A0MNI9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00003383g0024.1 protein AED:0.28 eAED:0.28 QI:15|0.9|0.72|1|0.9|0.72|11|0|293; (*GB) gi|388506856|gb|AFK41494.1| (e_value=2e-158) unknown [Lotus japonicus];; (*SWP) sp|Q9LRP1|NPS13_ARATH (e_value=1e-151) Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1;; (*TAIR) AT3G17440.1 (e_value=1e-152) | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 | chr3:5969909-5972290 REVERSE LENGTH=269;; (*ITAG) Solyc12g098950.1.1 (e_value=1e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64632421-64638462 transcript_region:SL2.40ch12:64632421..64638462+ go_terms:GO:0016020 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6U1B4_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00003383g0026.1 protein AED:0.02 eAED:0.02 QI:0|0.4|0.5|1|1|0.83|6|0|420; (*GB) gi|356556464|ref|XP_003546545.1| (e_value=0.0) PREDICTED: Pyruvate dehydrogenase [lipoamide] kinase-like [Glycine max];; (*SWP) sp|Q9P6P9|PDK_SCHPO (e_value=6e-62) [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.11c PE=2 SV=1;; (*TAIR) AT3G06483.1 (e_value=0.0) | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366;; (*ITAG) Solyc01g057210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:52729784-52733591 transcript_region:SL2.40ch01:52729784..52733591+ go_terms:GO:0004740 functional_description:"Pyruvate dehydrogenase kinase (AHRD V1 **** Q700B0_CICAR); contains Interpro domain(s) IPR018955 Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial "; GO:0004740 NbS00003383g0021.1 protein AED:0.13 eAED:0.13 QI:76|0.4|0.33|1|0.8|0.83|6|0|552; (*GB) gi|30268668|dbj|BAC76005.1| (e_value=0.0) RelA-SpoT like protein RSH4 [Nicotiana tabacum];; (*SWP) sp|Q8CS97|RELA_STAES (e_value=8e-22) GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1;; (*TAIR) AT3G17470.1 (e_value=0.0) | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot homolog | chr3:5979868-5981968 FORWARD LENGTH=583;; (*ITAG) Solyc12g098920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64620351-64623818 transcript_region:SL2.40ch12:64620351..64623818- go_terms:GO:0015969,GO:0005509 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--- Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0005509 NbS00011240g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.54|0.41|0.75|1|1|12|0|449; (*GB) gi|115469622|ref|NP_001058410.1| (e_value=0.0) Os06g0687800 [Oryza sativa Japonica Group];; (*SWP) sp|Q5E9R3|EHD1_BOVIN (e_value=4e-143) EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1;; (*TAIR) AT3G20290.2 (e_value=0.0) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc10g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:847004-852441 transcript_region:SL2.40ch10:847004..852441- go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **** B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00020997g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|225455838|ref|XP_002273242.1| (e_value=1e-26) PREDICTED: oleosin 16 kDa [Vitis vinifera];; (*ITAG) Solyc03g119820.1.1 (e_value=9e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62444432-62444929 transcript_region:SL2.40ch03:62444432..62444929- go_terms:GO:0016021 functional_description:"Oleosin Bn-V (AHRD V1 ***- B6UIA7_MAIZE); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00057154g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|225436984|ref|XP_002272235.1| (e_value=2e-129) PREDICTED: basic 7S globulin [Vitis vinifera];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=2e-63) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03230.1 (e_value=9e-97) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:790110-791414 FORWARD LENGTH=434;; (*ITAG) Solyc01g080020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71657539-71659169 transcript_region:SL2.40ch01:71657539..71659169- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00013065g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0.81|1|0.8|0.90|11|292|1152; (*GB) gi|356524698|ref|XP_003530965.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100788364 [Glycine max];; (*SWP) sp|Q8N1F8|S11IP_HUMAN (e_value=2e-24) Serine/threonine-protein kinase 11-interacting protein OS=Homo sapiens GN=STK11IP PE=1 SV=3;; (*TAIR) AT1G48540.2 (e_value=0.0) | Symbols: | Outer arm dynein light chain 1 protein | chr1:17945540-17950405 FORWARD LENGTH=1051;; (*ITAG) Solyc03g118620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61519525-61527461 transcript_region:SL2.40ch03:61519525..61527461- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 *--- D7KD26_ARALY)"; GO:0005515 NbS00013065g0002.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|1|1|4|511|242; (*GB) gi|224118614|ref|XP_002317864.1| (e_value=5e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE51|SURF1_ARATH (e_value=1e-106) Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1;; (*TAIR) AT3G17910.1 (e_value=1e-107) | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr3:6133581-6136053 FORWARD LENGTH=354;; (*ITAG) Solyc03g118610.2.1 (e_value=3e-159) genomic_reference:SL2.40ch03 gene_region:61516236-61519316 transcript_region:SL2.40ch03:61516236..61519316+ go_terms:GO:0051082 functional_description:"Surfeit locus protein 1 (AHRD V1 **-- B5XGV8_SALSA); contains Interpro domain(s) IPR002994 Surfeit locus 1 "; GO:0051082 NbS00013065g0003.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|93 NbC23508835g0001.1 protein AED:0.09 eAED:0.09 QI:29|1|0.5|1|0|0|2|0|33; (*ITAG) Solyc10g044740.1.1 (e_value=7e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23139489-23149227 transcript_region:SL2.40ch10:23139489..23149227+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00005104g0024.1 protein AED:0.10 eAED:0.10 QI:241|0.93|0.88|1|1|1|17|283|1031; (*GB) gi|225424116|ref|XP_002280133.1| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera];; (*SWP) sp|Q5BJS0|DHX30_RAT (e_value=1e-104) Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1;; (*TAIR) AT2G01130.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:88847-94635 REVERSE LENGTH=1113;; (*ITAG) Solyc04g007510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1184948-1200116 transcript_region:SL2.40ch04:1184948..1200116+ go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0005515 NbS00005104g0025.1 protein AED:0.23 eAED:0.23 QI:356|0.75|0.84|0.92|0.58|0.53|13|309|444; (*GB) gi|356536262|ref|XP_003536658.1| (e_value=0.0) PREDICTED: phosphatidylserine synthase 2-like [Glycine max];; (*SWP) sp|E7EY42|PTSS2_DANRE (e_value=4e-82) Phosphatidylserine synthase 2 OS=Danio rerio GN=ptdss2 PE=3 SV=1;; (*TAIR) AT1G15110.1 (e_value=0.0) | Symbols: | phosphatidyl serine synthase family protein | chr1:5199594-5201908 FORWARD LENGTH=425;; (*ITAG) Solyc04g007520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1208919-1216447 transcript_region:SL2.40ch04:1208919..1216447+ go_terms:GO:0003882 functional_description:"Phosphatidylserine synthase 2 (AHRD V1 ***- B6TFK2_MAIZE); contains Interpro domain(s) IPR004277 Phosphatidyl serine synthase "; GO:0003882 NbS00005104g0027.1 protein AED:0.56 eAED:0.69 QI:0|0|0|0.42|0.66|0.57|7|0|361; (*ITAG) Solyc09g059490.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00005104g0030.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.33|1|0.6|0.5|6|0|503; (*GB) gi|380751740|gb|AFE56211.1| (e_value=0.0) terpene synthase [Camellia sinensis];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=0.0) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=3e-115) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc06g059930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34213417-34254456 transcript_region:SL2.40ch06:34213417..34254456+ functional_description:"Sesquiterpene synthase 1 (AHRD V1 ***- Q9FQ27_SOLHA)"; NbS00019636g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.75|0.6|5|0|989; (*GB) gi|147806163|emb|CAN63332.1| (e_value=0.0) hypothetical protein VITISV_015577 [Vitis vinifera];; (*TAIR) AT2G33420.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:14158782-14162304 FORWARD LENGTH=1039;; (*ITAG) Solyc09g090480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65336422-65341225 transcript_region:SL2.40ch09:65336422..65341225- functional_description:"AT5g06970/MOJ9_14 (AHRD V1 **-- Q8RX56_ARATH); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00037269g0007.1 protein AED:0.18 eAED:0.19 QI:0|1|0.5|1|0|0.5|2|567|580; (*GB) gi|225461520|ref|XP_002285142.1| (e_value=9e-25) PREDICTED: uncharacterized protein LOC100248740 [Vitis vinifera];; (*TAIR) AT5G53930.1 (e_value=5e-15) | Symbols: | unknown protein; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21894387-21896283 REVERSE LENGTH=529;; (*ITAG) Solyc07g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62771612-62776253 transcript_region:SL2.40ch07:62771612..62776253+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 *-*- Q9FN33_ARATH)"; NbS00037269g0010.1 protein AED:0.16 eAED:0.28 QI:0|0.5|0.4|1|0|0.4|5|0|239; (*GB) gi|224117126|ref|XP_002317484.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9JXW2|PRMA_NEIMB (e_value=3e-27) Ribosomal protein L11 methyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=prmA PE=3 SV=1;; (*TAIR) AT5G53920.1 (e_value=7e-41) | Symbols: | ribosomal protein L11 methyltransferase-related | chr5:21892124-21894087 FORWARD LENGTH=371;; (*ITAG) Solyc07g062930.2.1 (e_value=1e-73) genomic_reference:SL2.40ch07 gene_region:62776691-62781667 transcript_region:SL2.40ch07:62776691..62781667- go_terms:GO:0008757 functional_description:"Ribosomal protein L11 methyltransferase-like protein (AHRD V1 **** Q9FN34_ARATH); contains Interpro domain(s) IPR010456 Ribosomal L11 methyltransferase "; GO:0008757 NbS00037269g0009.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|0.5|2|0|76; (*GB) gi|255584405|ref|XP_002532935.1| (e_value=5e-15) RNA methyltransferase, putative [Ricinus communis];; (*TAIR) AT5G53920.1 (e_value=1e-14) | Symbols: | ribosomal protein L11 methyltransferase-related | chr5:21892124-21894087 FORWARD LENGTH=371;; (*ITAG) Solyc07g062930.2.1 (e_value=1e-26) genomic_reference:SL2.40ch07 gene_region:62776691-62781667 transcript_region:SL2.40ch07:62776691..62781667- go_terms:GO:0008757 functional_description:"Ribosomal protein L11 methyltransferase-like protein (AHRD V1 **** Q9FN34_ARATH); contains Interpro domain(s) IPR010456 Ribosomal L11 methyltransferase "; GO:0008757 NbS00061027g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|219; (*GB) gi|357127649|ref|XP_003565491.1| (e_value=1e-14) PREDICTED: RING-H2 finger protein ATL32-like [Brachypodium distachyon];; (*SWP) sp|Q9DBU5|RNF6_MOUSE (e_value=3e-13) E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1;; (*TAIR) AT1G72310.1 (e_value=1e-14) | Symbols: ATL3 | RING/U-box superfamily protein | chr1:27226405-27227379 FORWARD LENGTH=324;; (*ITAG) Solyc00g217960.1.1 (e_value=3e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:19305694-19306137 transcript_region:SL2.40ch00:19305694..19306137+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000909g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|402; (*GB) gi|148611499|gb|ABQ95989.1| (e_value=0.0) phospholipase A1 [Capsicum annuum];; (*SWP) sp|O49523|DSEL_ARATH (e_value=1e-151) Phospholipase A1-IIgamma OS=Arabidopsis thaliana GN=DSEL PE=1 SV=1;; (*TAIR) AT4G18550.1 (e_value=8e-153) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36951797-36953361 transcript_region:SL2.40ch02:36951797..36953361- go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00000909g0005.1 protein AED:0.26 eAED:0.56 QI:0|0|0|1|0|0|3|0|143 NbS00002225g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|168; (*GB) gi|47825035|gb|AAT38805.1| (e_value=1e-35) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=1e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002225g0005.1 protein AED:0.06 eAED:0.06 QI:174|1|0.8|1|0.5|0.4|5|673|532; (*GB) gi|147778530|emb|CAN71713.1| (e_value=5e-26) hypothetical protein VITISV_013460 [Vitis vinifera];; (*ITAG) Solyc05g011930.2.1 (e_value=3e-104) genomic_reference:SL2.40ch05 gene_region:5158846-5169814 transcript_region:SL2.40ch05:5158846..5169814+ go_terms:GO:0031072 functional_description:"Heat shock protein binding protein (AHRD V1 *--- D7KWX9_ARALY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00002225g0019.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.6|1|0.75|0.4|5|0|449; (*GB) gi|224111880|ref|XP_002316010.1| (e_value=2e-178) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O48786|C734A_ARATH (e_value=7e-96) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=5e-97) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc05g011940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5169868-5171876 transcript_region:SL2.40ch05:5169868..5171876- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00002225g0020.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0.2|1|0.25|0.2|5|0|388; (*GB) gi|373501790|gb|AEY75214.1| (e_value=2e-125) cytochrome P450 CYP749A20 [Panax ginseng];; (*SWP) sp|O48786|C734A_ARATH (e_value=2e-60) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=1e-61) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc05g011970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5179822-5182337 transcript_region:SL2.40ch05:5179822..5182337+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00059091g0006.1 protein AED:0.08 eAED:0.08 QI:84|1|1|1|1|1|5|245|535; (*GB) gi|114193|sp|P27608.1|AROF_TOBAC (e_value=0.0) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor;; (*SWP) sp|P27608|AROF_TOBAC (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1;; (*TAIR) AT1G22410.1 (e_value=0.0) | Symbols: | Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527;; (*ITAG) Solyc04g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58061772-58065403 transcript_region:SL2.40ch04:58061772..58065403+ go_terms:GO:0005515,GO:0003849 functional_description:"3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase) (DAHP synthetase class II) (AHRD V1 **** A4YX08_BRASO); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0005515,GO:0003849 NbS00059091g0003.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|69 NbS00046975g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|91 NbS00031823g0010.1 protein AED:0.14 eAED:0.14 QI:503|0.93|0.93|1|0.93|0.93|16|502|848; (*GB) gi|255538552|ref|XP_002510341.1| (e_value=0.0) metalloendopeptidase, putative [Ricinus communis];; (*SWP) sp|Q29AK2|LMLN_DROPS (e_value=2e-47) Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura GN=GA17800 PE=3 SV=1;; (*TAIR) AT5G42620.2 (e_value=0.0) | Symbols: | metalloendopeptidases;zinc ion binding | chr5:17066630-17071766 FORWARD LENGTH=889;; (*ITAG) Solyc04g079900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61800538-61808304 transcript_region:SL2.40ch04:61800538..61808304- go_terms:GO:0016020 functional_description:"GP63 leishmanolysin (Metallo-peptidase clan ma(M) family m8) (AHRD V1 *--- A4H637_LEIBR); contains Interpro domain(s) IPR001577 Peptidase M8, leishmanolysin "; GO:0016020 NbS00031823g0011.1 protein AED:0.06 eAED:0.06 QI:85|1|0.5|1|0|0.5|2|0|248; (*GB) gi|359744028|gb|AEV57470.1| (e_value=1e-109) thaumatin-like protein 1 [Prunus persica];; (*SWP) sp|P28493|PR5_ARATH (e_value=6e-100) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT1G75030.1 (e_value=2e-103) | Symbols: ATLP-3, TLP-3 | thaumatin-like protein 3 | chr1:28174418-28175255 FORWARD LENGTH=246;; (*ITAG) Solyc04g079890.2.1 (e_value=4e-135) genomic_reference:SL2.40ch04 gene_region:61798328-61799451 transcript_region:SL2.40ch04:61798328..61799451+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- O24468_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00031823g0012.1 protein AED:0.16 eAED:0.24 QI:18|0.5|0|1|0|0|3|0|167; (*GB) gi|224063587|ref|XP_002301215.1| (e_value=2e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHN4|LPAT5_ARATH (e_value=2e-51) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1;; (*TAIR) AT3G18850.4 (e_value=2e-52) | Symbols: LPAT5 | lysophosphatidyl acyltransferase 5 | chr3:6499529-6500840 REVERSE LENGTH=375;; (*ITAG) Solyc04g079880.2.1 (e_value=2e-71) genomic_reference:SL2.40ch04 gene_region:61792016-61794085 transcript_region:SL2.40ch04:61792016..61794085+ go_terms:GO:0005515,GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** B2LWM4_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0005515,GO:0003841 NbS00024387g0007.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.27|0.6|0.72|11|0|555; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-12) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00024387g0006.1 protein AED:0.16 eAED:0.16 QI:1503|0.4|0.16|0.83|0.4|0.66|6|0|157; (*GB) gi|224129086|ref|XP_002320497.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G04960.1 (e_value=8e-26) | Symbols: | Protein of unknown function (DUF1664) | chr1:1408021-1410673 REVERSE LENGTH=317;; (*ITAG) Solyc08g082730.2.1 (e_value=2e-28) genomic_reference:SL2.40ch08 gene_region:62591302-62596193 transcript_region:SL2.40ch08:62591302..62596193+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00024387g0009.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|0|0|2|0|91 NbS00025992g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|0.33|0.5|4|0|541; (*GB) gi|255551070|ref|XP_002516583.1| (e_value=2e-68) hypothetical protein RCOM_0803370 [Ricinus communis];; (*TAIR) AT5G11470.1 (e_value=1e-58) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr5:3662757-3667041 REVERSE LENGTH=757;; (*ITAG) Solyc11g012810.1.1 (e_value=1e-176) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5572669-5592438 transcript_region:SL2.40ch11:5572669..5592438+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025992g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.28|0.25|0.5|0.71|0.87|8|485|150 NbS00024963g0005.1 protein AED:0.01 eAED:0.01 QI:0|0.33|0.5|1|0|0|4|381|415; (*GB) gi|225448451|ref|XP_002272995.1| (e_value=0.0) PREDICTED: leucoanthocyanidin dioxygenase [Vitis vinifera];; (*SWP) sp|P51091|LDOX_MALDO (e_value=5e-63) Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1;; (*TAIR) AT5G05600.1 (e_value=6e-168) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc03g096050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51317291-51320454 transcript_region:SL2.40ch03:51317291..51320454+ go_terms:GO:0016706,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-* ACCO1_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0009815 NbS00024963g0006.1 protein AED:0.26 eAED:0.54 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|82230|pir||A05185 (e_value=6e-21) hypothetical protein 80 - common tobacco chloroplast;; (*SWP) sp|Q8WI26|RPOC2_PSINU (e_value=7e-17) DNA-directed RNA polymerase subunit beta'' OS=Psilotum nudum GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=1e-16) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376; NbS00041433g0001.1 protein AED:0.18 eAED:0.18 QI:113|0|0.5|0.5|1|1|2|0|153; (*GB) gi|374351670|gb|AEZ36036.1| (e_value=3e-51) DNA ligase 4, partial [Nicotiana benthamiana];; (*SWP) sp|Q9LL84|DNLI4_ARATH (e_value=6e-38) DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1;; (*TAIR) AT5G57160.1 (e_value=4e-39) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219;; (*ITAG) Solyc07g017990.2.1 (e_value=3e-54) genomic_reference:SL2.40ch07 gene_region:8737595-8770718 transcript_region:SL2.40ch07:8737595..8770718+ go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- D7MMS2_ARALY); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00041433g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|0.5|2|0|62; (*GB) gi|225445943|ref|XP_002263967.1| (e_value=4e-26) PREDICTED: DNA ligase 4-like [Vitis vinifera];; (*SWP) sp|Q7X7E9|DNLI4_ORYSJ (e_value=8e-26) Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2;; (*TAIR) AT5G57160.1 (e_value=7e-26) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219;; (*ITAG) Solyc07g017990.2.1 (e_value=4e-32) genomic_reference:SL2.40ch07 gene_region:8737595-8770718 transcript_region:SL2.40ch07:8737595..8770718+ go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- D7MMS2_ARALY); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00025001g0017.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|356; (*GB) gi|338173753|gb|AEI83423.1| (e_value=4e-147) glutamyl-tRNA reductase [Camellia sinensis];; (*SWP) sp|P93111|HEM11_CUCSA (e_value=4e-142) Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1;; (*TAIR) AT1G58290.1 (e_value=6e-132) | Symbols: HEMA1 | Glutamyl-tRNA reductase family protein | chr1:21624028-21626051 REVERSE LENGTH=543;; (*ITAG) Solyc01g106390.2.1 (e_value=1e-171) genomic_reference:SL2.40ch01 gene_region:86065693-86068605 transcript_region:SL2.40ch01:86065693..86068605- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Glutamyl-tRNA reductase (AHRD V1 ***- A5BZY3_VITVI); contains Interpro domain(s) IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase "; GO:0008152,GO:0005737,GO:0055114 NbS00025001g0005.1 protein AED:0.21 eAED:0.21 QI:80|1|1|1|0.75|0.6|5|511|398; (*GB) gi|224060985|ref|XP_002300308.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64470.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF828) | chr5:25776026-25777716 FORWARD LENGTH=407;; (*ITAG) Solyc01g106370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86060344-86064054 transcript_region:SL2.40ch01:86060344..86064054+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00025001g0002.1 protein AED:0.25 eAED:0.25 QI:323|0.9|0.90|1|0.9|0.85|21|311|630; (*GB) gi|225429238|ref|XP_002264191.1| (e_value=0.0) PREDICTED: fatty acid amide hydrolase [Vitis vinifera];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=0.0) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=0.0) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86031605-86039647 transcript_region:SL2.40ch01:86031605..86039647+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00025001g0019.1 protein AED:0.28 eAED:0.32 QI:0|0.76|0.72|0.94|0.76|0.72|18|16|553; (*GB) gi|255554561|ref|XP_002518319.1| (e_value=0.0) glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=0.0) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=0.0) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86051299-86059178 transcript_region:SL2.40ch01:86051299..86059178+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00025001g0004.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|224105845|ref|XP_002313952.1| (e_value=9e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64480.1 (e_value=1e-29) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25778202-25778756 FORWARD LENGTH=184;; (*ITAG) Solyc01g106380.2.1 (e_value=6e-73) genomic_reference:SL2.40ch01 gene_region:86064812-86065480 transcript_region:SL2.40ch01:86064812..86065480+ functional_description:"Genomic DNA chromosome 5 BAC clone T12B11 (AHRD V1 ***- Q9FGE8_ARATH)"; NbS00025001g0011.1 protein AED:0.45 eAED:0.50 QI:336|0.5|0.33|1|0.5|0.33|3|0|64; (*GB) gi|69218101|gb|AAZ04133.1| (e_value=3e-21) N-acylethanolamine amidohydrolase [Medicago truncatula];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=2e-17) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=1e-18) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106360.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:86051299-86059178 transcript_region:SL2.40ch01:86051299..86059178+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00005627g0007.1 protein AED:0.32 eAED:0.32 QI:33|1|0.5|1|0|0.5|2|309|67; (*GB) gi|224136490|ref|XP_002326873.1| (e_value=6e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01710.1 (e_value=1e-39) | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subunit (p16-Arc) | chr4:735776-736450 FORWARD LENGTH=132;; (*ITAG) Solyc01g090450.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:75891415-75896855 transcript_region:SL2.40ch01:75891415..75896855+ go_terms:GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 5 (AHRD V1 **** A5AQ06_VITVI); contains Interpro domain(s) IPR006789 ARP2/3 complex 16 kDa subunit (p16-Arc) "; GO:0051015 NbS00005627g0006.1 protein AED:0.09 eAED:0.09 QI:245|1|1|1|0.66|0.75|4|278|291; (*GB) gi|255538948|ref|XP_002510539.1| (e_value=4e-25) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g081480.1.1 (e_value=6e-100) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:63032063-63035236 transcript_region:SL2.40ch04:63032063..63035236+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016800g0004.1 protein AED:0.10 eAED:0.10 QI:170|1|1|1|0.83|0.84|13|211|479; (*GB) gi|297735172|emb|CBI17534.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=2e-149) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc02g085400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42897475-42900557 transcript_region:SL2.40ch02:42897475..42900557- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00035806g0020.1 protein AED:0.19 eAED:0.20 QI:147|0.77|0.75|1|0.59|0.71|28|0|1872; (*GB) gi|255560886|ref|XP_002521456.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G27670.1 (e_value=0.0) | Symbols: RST1 | ARM repeat superfamily protein | chr3:10245338-10253158 FORWARD LENGTH=1841;; (*ITAG) Solyc02g086500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43746420-43759951 transcript_region:SL2.40ch02:43746420..43759951+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGF10 (AHRD V1 **-- Q9LVX3_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00035806g0022.1 protein AED:0.20 eAED:0.20 QI:299|0.66|0.57|1|0.5|0.57|7|0|799; (*GB) gi|359488670|ref|XP_002273438.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 41-like [Vitis vinifera];; (*SWP) sp|Q9LVX1|C3H41_ARATH (e_value=2e-154) Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1;; (*TAIR) AT3G27700.2 (e_value=1e-155) | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE LENGTH=908;; (*ITAG) Solyc02g086510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43760363-43764291 transcript_region:SL2.40ch02:43760363..43764291- go_terms:GO:0003676,GO:0016020,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 41 (AHRD V1 **-- C3H41_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0016020,GO:0008270,GO:0000166 NbS00035806g0019.1 protein AED:0.27 eAED:0.29 QI:0|0.5|0|1|0.5|0.66|3|0|527; (*GB) gi|225452376|ref|XP_002275607.1| (e_value=6e-70) PREDICTED: uncharacterized protein LOC100264681 [Vitis vinifera];; (*TAIR) AT5G14540.1 (e_value=8e-58) | Symbols: | Protein of unknown function (DUF1421) | chr5:4687333-4689624 REVERSE LENGTH=547;; (*ITAG) Solyc02g086520.2.1 (e_value=4e-124) genomic_reference:SL2.40ch02 gene_region:43768094-43773087 transcript_region:SL2.40ch02:43768094..43773087- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00035806g0017.1 protein AED:0.39 eAED:0.39 QI:0|1|0.33|1|1|1|3|0|226; (*GB) gi|198400335|gb|ACH87176.1| (e_value=9e-139) 50S ribosomal protein L5 [Camellia sinensis];; (*SWP) sp|O04603|RK5_ARATH (e_value=2e-124) 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1;; (*TAIR) AT4G01310.1 (e_value=1e-125) | Symbols: | Ribosomal L5P family protein | chr4:544166-545480 REVERSE LENGTH=262;; (*ITAG) Solyc09g007560.2.1 (e_value=1e-156) genomic_reference:SL2.40ch09 gene_region:1157881-1159523 transcript_region:SL2.40ch09:1157881..1159523+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- B5TV71_CAMSI); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00061402g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224104365|ref|XP_002313412.1| (e_value=4e-41) copper transporter [Populus trichocarpa];; (*SWP) sp|Q39065|COPT1_ARATH (e_value=8e-36) Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2;; (*TAIR) AT5G59030.1 (e_value=6e-37) | Symbols: COPT1 | copper transporter 1 | chr5:23833945-23834457 REVERSE LENGTH=170;; (*ITAG) Solyc06g005820.2.1 (e_value=8e-63) genomic_reference:SL2.40ch06 gene_region:855142-856178 transcript_region:SL2.40ch06:855142..856178- go_terms:GO:0015089 functional_description:"Copper transporter (AHRD V1 **** A9PEN3_POPTR); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0015089 NbS00011331g0022.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0|2|0|128 NbS00011331g0017.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|1|1|4|0|240; (*GB) gi|118486116|gb|ABK94901.1| (e_value=9e-113) unknown [Populus trichocarpa];; (*SWP) sp|Q9ZUA5|VIT1_ARATH (e_value=8e-112) Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1;; (*TAIR) AT2G01770.1 (e_value=6e-113) | Symbols: VIT1, ATVIT1 | vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250;; (*ITAG) Solyc04g008060.2.1 (e_value=3e-126) genomic_reference:SL2.40ch04 gene_region:1717764-1721092 transcript_region:SL2.40ch04:1717764..1721092- go_terms:GO:0015093 functional_description:"Vacuolar iron transporter Ccc1 (AHRD V1 **-* C5GIS5_AJEDR); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; GO:0015093 NbS00011331g0023.1 protein AED:0.05 eAED:0.05 QI:0|0.2|0.16|1|0.2|0.16|6|0|837; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-67) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G58400.1 (e_value=1e-45) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21696165-21699118 REVERSE LENGTH=900;; (*ITAG) Solyc04g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00011331g0025.1 protein AED:0.22 eAED:0.22 QI:389|1|1|1|0.81|0.83|12|469|629; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=0.0) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=0.0) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc04g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1700710-1706396 transcript_region:SL2.40ch04:1700710..1706396+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00011331g0024.1 protein AED:0.24 eAED:0.25 QI:304|0.5|0.55|1|0.75|0.66|9|26|558; (*GB) gi|343407540|gb|AEM23771.1| (e_value=0.0) RRB1 type-b response regulator [Nicotiana tabacum];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=7e-115) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G16857.1 (e_value=2e-116) | Symbols: ARR1, RR1 | response regulator 1 | chr3:5756113-5758853 FORWARD LENGTH=669;; (*ITAG) Solyc04g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1707771-1714100 transcript_region:SL2.40ch04:1707771..1714100+ go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 ***- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0006355,GO:0045449 NbS00028673g0006.1 protein AED:0.14 eAED:0.14 QI:407|0.66|0.75|1|1|1|4|0|733; (*GB) gi|224070734|ref|XP_002303218.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|O82804|ELF3_ARATH (e_value=2e-31) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=1e-32) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc06g062480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35809650-35813216 transcript_region:SL2.40ch06:35809650..35813216+ functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; NbS00028673g0009.1 protein AED:0.09 eAED:0.11 QI:23|0|0.33|1|0|0|3|0|360; (*GB) gi|225442367|ref|XP_002276490.1| (e_value=1e-167) PREDICTED: uncharacterized protein LOC100266878 [Vitis vinifera];; (*TAIR) AT5G11730.1 (e_value=4e-156) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc06g062490.2.1 (e_value=7e-178) genomic_reference:SL2.40ch06 gene_region:35813712-35815198 transcript_region:SL2.40ch06:35813712..35815198- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00028673g0010.1 protein AED:0.95 eAED:1.00 QI:0|0|0|0.2|1|1|5|0|144 NbS00027606g0002.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0.44|0.77|1|1|9|0|260; (*GB) gi|255576223|ref|XP_002529005.1| (e_value=4e-148) Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=6e-55) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G71900.1 (e_value=1e-134) | Symbols: | Protein of unknown function (DUF803) | chr1:27061754-27064053 FORWARD LENGTH=343;; (*ITAG) Solyc01g103760.2.1 (e_value=3e-163) genomic_reference:SL2.40ch01 gene_region:84049754-84055434 transcript_region:SL2.40ch01:84049754..84055434+ go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbS00027606g0007.1 protein AED:0.12 eAED:0.12 QI:310|0.75|0.92|0.92|1|1|13|446|454; (*GB) gi|297739543|emb|CBI29725.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C1A4M2|HIS1_GEMAT (e_value=2e-28) ATP phosphoribosyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=hisG PE=3 SV=1;; (*TAIR) AT1G09795.1 (e_value=0.0) | Symbols: ATATP-PRT2, HISN1B, ATP-PRT2 | ATP phosphoribosyl transferase 2 | chr1:3173588-3176690 FORWARD LENGTH=413;; (*ITAG) Solyc01g103750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84038786-84043729 transcript_region:SL2.40ch01:84038786..84043729- go_terms:GO:0003879 functional_description:"ATP phosphoribosyltransferase (AHRD V1 **** O46887_THLGO); contains Interpro domain(s) IPR001348 Histidine biosynthesis HisG: ATP phosphoribosyltransferase "; GO:0003879 NbS00007955g0012.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|6|426|581; (*GB) gi|225450232|ref|XP_002266606.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=8e-58) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G44500.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:18374447-18376435 FORWARD LENGTH=573;; (*ITAG) Solyc01g086640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73378678-73382504 transcript_region:SL2.40ch01:73378678..73382504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00007955g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|172; (*ITAG) Solyc06g011460.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00007955g0015.1 protein AED:0.20 eAED:0.20 QI:451|1|1|1|0.8|0.66|6|530|375; (*GB) gi|15237505|ref|NP_198901.1| (e_value=0.0) urophorphyrin methylase 1 [Arabidopsis thaliana];; (*SWP) sp|Q4K9V8|CYSG_PSEF5 (e_value=2e-74) Siroheme synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=cysG PE=3 SV=1;; (*TAIR) AT5G40850.1 (e_value=0.0) | Symbols: UPM1 | urophorphyrin methylase 1 | chr5:16367205-16368724 FORWARD LENGTH=369;; (*ITAG) Solyc01g086650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73383501-73387568 transcript_region:SL2.40ch01:73383501..73387568- go_terms:GO:0008152,GO:0006779,GO:0055114 functional_description:"Siroheme synthase (AHRD V1 ***- A3LD64_PSEAE); contains Interpro domain(s) IPR006366 Uroporphyrin-III C-methyltransferase, C-terminal "; GO:0008152,GO:0006779,GO:0055114 NbS00026030g0004.1 protein AED:0.16 eAED:0.16 QI:182|0.88|0.92|0.96|0.92|0.88|26|644|1259; (*GB) gi|359491892|ref|XP_002277544.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266746 [Vitis vinifera];; (*SWP) sp|P31828|PQQL_ECOLI (e_value=2e-27) Probable zinc protease pqqL OS=Escherichia coli (strain K12) GN=pqqL PE=3 SV=2;; (*TAIR) AT5G42390.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr5:16945308-16952647 FORWARD LENGTH=1265;; (*ITAG) Solyc03g118430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61358472-61373773 transcript_region:SL2.40ch03:61358472..61373773- go_terms:GO:0006508,GO:0046872 functional_description:"Peptidase M16 family (AHRD V1 *--- D3IC43_9BACT); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00026030g0006.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|3|0|136; (*TAIR) AT3G05610.1 (e_value=4e-12) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669;; (*ITAG) Solyc00g023470.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00040024g0009.1 protein AED:0.21 eAED:0.22 QI:0|0.75|0.4|1|0.75|0.6|5|0|969; (*GB) gi|109659810|dbj|BAE96752.1| (e_value=0.0) nitrate reductase 2 [Nicotiana benthamiana];; (*SWP) sp|P08509|NIA2_TOBAC (e_value=0.0) Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2;; (*TAIR) AT1G37130.1 (e_value=0.0) | Symbols: NIA2, B29, NIA2-1, CHL3, NR, NR2, ATNR2 | nitrate reductase 2 | chr1:14158617-14161652 FORWARD LENGTH=917;; (*ITAG) Solyc11g013810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7173973-7178090 transcript_region:SL2.40ch11:7173973..7178090- go_terms:GO:0009055,GO:0020037,GO:0055114 functional_description:"Nitrate reductase (AHRD V1 ***- Q8LT13_SOLTU); contains Interpro domain(s) IPR012137 Nitrate reductase NADH dependant "; GO:0009055,GO:0020037,GO:0055114 NbS00018694g0006.1 protein AED:0.00 eAED:0.00 QI:86|1|1|1|0|0.66|3|590|168; (*GB) gi|222822657|gb|ACM68441.1| (e_value=9e-97) stress-associated protein 4 [Solanum lycopersicum];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=2e-74) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=6e-52) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc01g086970.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:73647298-73648116 transcript_region:SL2.40ch01:73647298..73648116- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00028435g0008.1 protein AED:0.09 eAED:0.09 QI:577|1|0.88|1|0.87|0.88|9|368|1156; (*GB) gi|255570334|ref|XP_002526126.1| (e_value=0.0) Ran GTPase binding protein, putative [Ricinus communis];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=1e-44) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G42140.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:16837547-16841640 REVERSE LENGTH=1073;; (*ITAG) Solyc04g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55505152-55514903 transcript_region:SL2.40ch04:55505152..55514903- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00008376g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|494; (*GB) gi|297740043|emb|CBI30225.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P37122|C76A2_SOLME (e_value=9e-138) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=0.0) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc09g098620.1.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2294563-2298049 transcript_region:SL2.40ch09:2294563..2298049+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00044699g0004.1 protein AED:0.15 eAED:0.15 QI:498|0.85|0.87|1|1|1|8|101|520; (*GB) gi|309401691|gb|ADO79931.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana tabacum];; (*SWP) sp|Q38873|CDPK7_ARATH (e_value=0.0) Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=1 SV=1;; (*TAIR) AT5G12480.1 (e_value=0.0) | Symbols: CPK7 | calmodulin-domain protein kinase 7 | chr5:4047817-4050035 REVERSE LENGTH=535;; (*ITAG) Solyc10g079130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60064941-60068542 transcript_region:SL2.40ch10:60064941..60068542- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00015177g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.66|1|4|221|341; (*GB) gi|359489272|ref|XP_002274161.2| (e_value=2e-143) PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q86WJ1|CHD1L_HUMAN (e_value=2e-23) Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=2;; (*TAIR) AT2G44980.1 (e_value=1e-113) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein | chr2:18552440-18556669 REVERSE LENGTH=851;; (*ITAG) Solyc01g090650.1.1 (e_value=3e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76049440-76059366 transcript_region:SL2.40ch01:76049440..76059366- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 **-- CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00015177g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.44|0.77|0.62|0.66|9|0|369; (*GB) gi|359489272|ref|XP_002274161.2| (e_value=1e-159) PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q86WJ1|CHD1L_HUMAN (e_value=6e-52) Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=2;; (*TAIR) AT2G44980.2 (e_value=4e-139) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein | chr2:18552343-18556669 REVERSE LENGTH=877;; (*ITAG) Solyc01g090650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76049440-76059366 transcript_region:SL2.40ch01:76049440..76059366- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 **-- CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00015177g0010.1 protein AED:0.30 eAED:0.30 QI:85|1|0.5|1|1|1|2|0|91; (*GB) gi|357504557|ref|XP_003622567.1| (e_value=6e-35) Receptor-like protein kinase [Medicago truncatula];; (*SWP) sp|Q86WJ1|CHD1L_HUMAN (e_value=4e-23) Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens GN=CHD1L PE=1 SV=2;; (*TAIR) AT2G44980.2 (e_value=3e-31) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein | chr2:18552343-18556669 REVERSE LENGTH=877;; (*ITAG) Solyc01g090650.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76049440-76059366 transcript_region:SL2.40ch01:76049440..76059366- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 **-- CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00015177g0006.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|147852210|emb|CAN80139.1| (e_value=2e-33) hypothetical protein VITISV_028513 [Vitis vinifera];; (*TAIR) AT1G52800.1 (e_value=5e-34) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc01g090630.2.1 (e_value=6e-69) genomic_reference:SL2.40ch01 gene_region:76044003-76046261 transcript_region:SL2.40ch01:76044003..76046261+ go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00008170g0002.1 protein AED:0.29 eAED:0.29 QI:212|0.4|0.33|0.5|0.8|0.66|6|0|145; (*GB) gi|225461311|ref|XP_002281726.1| (e_value=7e-61) PREDICTED: double-strand break repair protein MRE11 [Vitis vinifera];; (*SWP) sp|Q9XGM2|MRE11_ARATH (e_value=5e-62) Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1;; (*TAIR) AT5G54260.1 (e_value=4e-63) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720;; (*ITAG) Solyc09g009340.1.1 (e_value=5e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00008170g0001.1 protein AED:0.30 eAED:0.30 QI:212|0.4|0.33|0.5|0.8|0.66|6|0|153; (*GB) gi|225461311|ref|XP_002281726.1| (e_value=1e-59) PREDICTED: double-strand break repair protein MRE11 [Vitis vinifera];; (*SWP) sp|Q9XGM2|MRE11_ARATH (e_value=8e-60) Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1;; (*TAIR) AT5G54260.1 (e_value=6e-61) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720;; (*ITAG) Solyc09g009340.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00055755g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.6|0.33|0.83|0.6|0.5|6|0|565; (*GB) gi|359490578|ref|XP_002275623.2| (e_value=0.0) PREDICTED: S-type anion channel SLAH3-like [Vitis vinifera];; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=0.0) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=0.0) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc09g014610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6258472-6261286 transcript_region:SL2.40ch09:6258472..6261286- go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00045387g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|224116596|ref|XP_002331879.1| (e_value=2e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NQG7|ATL78_ARATH (e_value=9e-40) RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1;; (*TAIR) AT1G49230.1 (e_value=7e-41) | Symbols: | RING/U-box superfamily protein | chr1:18209320-18209979 FORWARD LENGTH=219;; (*ITAG) Solyc11g005300.1.1 (e_value=6e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:242422-243084 transcript_region:SL2.40ch11:242422..243084+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00056117g0003.1 protein AED:0.07 eAED:0.07 QI:226|1|1|1|1|1|2|426|954; (*GB) gi|255571792|ref|XP_002526839.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|O22938|Y2182_ARATH (e_value=3e-122) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT1G34420.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr1:12584587-12587570 FORWARD LENGTH=966;; (*ITAG) Solyc11g017270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8140406-8143583 transcript_region:SL2.40ch11:8140406..8143583- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00051874g0007.1 protein AED:0.17 eAED:0.17 QI:97|1|0.8|1|0.5|0.6|5|0|761; (*GB) gi|296081013|emb|CBI18517.3| (e_value=2e-129) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G27510.1 (e_value=2e-60) | Symbols: | unknown protein; Has 25 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13746284-13748996 REVERSE LENGTH=728;; (*ITAG) Solyc11g020910.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:12908978-12916288 transcript_region:SL2.40ch11:12908978..12916288+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051874g0008.1 protein AED:0.05 eAED:0.05 QI:64|1|1|1|0.6|0.5|6|461|314; (*GB) gi|357519327|ref|XP_003629952.1| (e_value=2e-62) Transcription factor bZIP63 [Medicago truncatula];; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=4e-14) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G35490.1 (e_value=4e-44) | Symbols: | bZIP family transcription factor | chr1:13061856-13063166 FORWARD LENGTH=300;; (*ITAG) Solyc11g020950.1.1 (e_value=5e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:12975389-12977033 transcript_region:SL2.40ch11:12975389..12977033- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 **** Q2R8T2_ORYSJ); contains Interpro domain(s) IPR004827 Basic-leucine zipper (bZIP) transcription factor "; GO:0016563,GO:0003677 NbS00008833g0001.1 protein AED:0.28 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|244; (*GB) gi|147772174|emb|CAN64546.1| (e_value=3e-77) hypothetical protein VITISV_006074 [Vitis vinifera];; (*SWP) sp|Q9C8N5|STOP1_ARATH (e_value=9e-39) Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1;; (*TAIR) AT5G22890.1 (e_value=3e-60) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:7653541-7654662 REVERSE LENGTH=373;; (*ITAG) Solyc11g066420.1.1 (e_value=4e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49281582-49282736 transcript_region:SL2.40ch11:49281582..49282736+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M1K6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00008833g0102.1 protein AED:0.35 eAED:0.35 QI:106|1|1|1|0.83|0.85|7|414|192 NbS00008833g0103.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|346 NbS00008833g0110.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|200 NbS00011388g0004.1 protein AED:0.00 eAED:0.00 QI:196|1|1|1|0|0|2|177|116; (*GB) gi|297737105|emb|CBI26306.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2V3I3|EPFL4_ARATH (e_value=3e-27) EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=3 SV=1;; (*TAIR) AT4G14723.1 (e_value=3e-28) | Symbols: | BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8440167-8440693 FORWARD LENGTH=109;; (*ITAG) Solyc09g082620.2.1 (e_value=3e-46) genomic_reference:SL2.40ch09 gene_region:63743394-63744775 transcript_region:SL2.40ch09:63743394..63744775+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 4 (AHRD V1 *--- EPFL4_ARATH)"; NbS00026801g0011.1 protein AED:0.37 eAED:0.44 QI:0|0.42|0.5|1|0.57|0.62|8|0|403; (*GB) gi|359488472|ref|XP_003633763.1| (e_value=0.0) PREDICTED: probable metal-nicotianamine transporter YSL6-like isoform 4 [Vitis vinifera];; (*SWP) sp|Q6R3K6|YSL6_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2;; (*TAIR) AT3G27020.1 (e_value=0.0) | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961623-9964461 REVERSE LENGTH=676;; (*ITAG) Solyc02g094280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49437687-49445952 transcript_region:SL2.40ch02:49437687..49445952+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00026801g0010.1 protein AED:0.41 eAED:0.44 QI:0|0.5|0|1|0.5|0.66|3|0|265; (*GB) gi|224055759|ref|XP_002298639.1| (e_value=1e-144) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q6R3K6|YSL6_ARATH (e_value=5e-141) Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2;; (*TAIR) AT3G27020.1 (e_value=4e-142) | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961623-9964461 REVERSE LENGTH=676;; (*ITAG) Solyc02g094280.2.1 (e_value=2e-165) genomic_reference:SL2.40ch02 gene_region:49437687-49445952 transcript_region:SL2.40ch02:49437687..49445952+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00026801g0003.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|224055759|ref|XP_002298639.1| (e_value=4e-42) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q6R3K6|YSL6_ARATH (e_value=3e-43) Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2;; (*TAIR) AT3G27020.1 (e_value=2e-44) | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961623-9964461 REVERSE LENGTH=676;; (*ITAG) Solyc02g094280.2.1 (e_value=3e-46) genomic_reference:SL2.40ch02 gene_region:49437687-49445952 transcript_region:SL2.40ch02:49437687..49445952+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00037414g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|221|500; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=2e-166) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=6e-168) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26330.1 (e_value=7e-122) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc08g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbC24805505g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|356554292|ref|XP_003545482.1| (e_value=1e-71) PREDICTED: cytochrome P450 71D11-like [Glycine max];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=2e-69) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=4e-62) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc09g066400.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60410637-60412223 transcript_region:SL2.40ch09:60410637..60412223- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00058483g0005.1 protein AED:0.07 eAED:0.07 QI:206|1|0.8|1|1|1|5|0|294; (*GB) gi|356496531|ref|XP_003517120.1| (e_value=5e-163) PREDICTED: phosphate carrier protein, mitochondrial-like [Glycine max];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=6e-80) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT2G17270.1 (e_value=2e-144) | Symbols: PHT3;3 | phosphate transporter 3;3 | chr2:7510456-7512118 FORWARD LENGTH=309;; (*ITAG) Solyc03g032030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8815863-8821682 transcript_region:SL2.40ch03:8815863..8821682- go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9H646_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00058483g0006.1 protein AED:0.20 eAED:0.31 QI:0|0|0|1|0|0|3|0|226; (*GB) gi|32186912|gb|AAP73460.1| (e_value=9e-66) actin [Gossypium hirsutum];; (*SWP) sp|P53492|ACT7_ARATH (e_value=9e-66) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=7e-67) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=5e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00044586g0001.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|222822695|gb|ACM68460.1| (e_value=2e-65) stress-associated protein 10 [Solanum pennellii];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=7e-32) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=5e-33) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=9e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00044586g0002.1 protein AED:0.52 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|70; (*TAIR) AT3G13440.1 (e_value=2e-13) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:4378338-4379347 FORWARD LENGTH=278;; (*ITAG) Solyc12g100070.1.1 (e_value=6e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65290244-65290834 transcript_region:SL2.40ch12:65290244..65290834- go_terms:GO:0032259,GO:0008168 functional_description:"Methyltransferase (AHRD V1 ***- A6ZYA0_YEAS7); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0032259,GO:0008168 NbS00043163g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|529; (*GB) gi|225455459|ref|XP_002274808.1| (e_value=0.0) PREDICTED: multidrug and toxin extrusion protein 2-like [Vitis vinifera];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=8e-63) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT4G23030.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc06g035710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:21461952-21463514 transcript_region:SL2.40ch06:21461952..21463514+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PHOLL); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00006304g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|179; (*GB) gi|356576525|ref|XP_003556381.1| (e_value=2e-73) PREDICTED: uncharacterized protein LOC100806497 [Glycine max];; (*TAIR) AT3G23290.2 (e_value=4e-75) | Symbols: LSH4 | Protein of unknown function (DUF640) | chr3:8326958-8328010 FORWARD LENGTH=195;; (*ITAG) Solyc09g090180.1.1 (e_value=7e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65061991-65062617 transcript_region:SL2.40ch09:65061991..65062617- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00045601g0011.1 protein AED:0.11 eAED:0.11 QI:281|0.87|0.8|1|0.91|0.92|25|314|1069; (*GB) gi|356576819|ref|XP_003556527.1| (e_value=0.0) PREDICTED: topless-related protein 3-like [Glycine max];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=0.0) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=0.0) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbC25891975g0003.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|0.75|4|0|127; (*GB) gi|371501270|dbj|BAL44262.1| (e_value=2e-87) ADP-ribosylation factor-like 8a [Nicotiana tabacum];; (*SWP) sp|Q5ZKQ8|ARL8A_CHICK (e_value=7e-67) ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1;; (*TAIR) AT3G49870.1 (e_value=2e-86) | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like A1C | chr3:18492674-18494021 REVERSE LENGTH=184;; (*ITAG) Solyc02g064640.2.1 (e_value=5e-89) genomic_reference:SL2.40ch02 gene_region:30306545-30309276 transcript_region:SL2.40ch02:30306545..30309276- go_terms:GO:0005525 functional_description:"ADP-RIBOSYLATION FACTOR-like protein (AHRD V1 ***- Q8VY57_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00002963g0012.1 protein AED:0.02 eAED:0.02 QI:192|1|1|1|1|1|2|308|229; (*GB) gi|255539487|ref|XP_002510808.1| (e_value=8e-106) steroid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9M2Z4|MSBP2_ARATH (e_value=8e-86) Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1;; (*TAIR) AT3G48890.1 (e_value=6e-87) | Symbols: ATMP2, ATMAPR3, MSBP2, MAPR3 | membrane-associated progesterone binding protein 3 | chr3:18129669-18131353 FORWARD LENGTH=233;; (*ITAG) Solyc03g025950.2.1 (e_value=5e-115) genomic_reference:SL2.40ch03 gene_region:7764256-7767163 transcript_region:SL2.40ch03:7764256..7767163+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 ***- C0NU44_AJECG); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00002963g0013.1 protein AED:0.03 eAED:0.03 QI:189|1|1|1|1|1|3|679|137; (*GB) gi|225470696|ref|XP_002263439.1| (e_value=6e-55) PREDICTED: putative uncharacterized protein DDB_G0287975 [Vitis vinifera];; (*TAIR) AT5G52220.2 (e_value=8e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607). | chr5:21207165-21207678 REVERSE LENGTH=116;; (*ITAG) Solyc06g051300.2.1 (e_value=1e-63) genomic_reference:SL2.40ch06 gene_region:31018782-31026278 transcript_region:SL2.40ch06:31018782..31026278+ functional_description:"Genomic DNA chromosome 5 BAC clone F17P19 (AHRD V1 ***- Q9LTJ9_ARATH); contains Interpro domain(s) IPR018607 Chromosome transmission fidelity protein 8 "; NbS00002963g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|346467855|gb|AEO33772.1| (e_value=5e-84) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|Q9WTR7|SC11C_RAT (e_value=6e-53) Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3;; (*TAIR) AT1G52600.1 (e_value=3e-82) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180;; (*ITAG) Solyc12g006540.1.1 (e_value=9e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1050794-1055944 transcript_region:SL2.40ch12:1050794..1055944+ go_terms:GO:0016020 functional_description:"Signal peptidase complex catalytic subunit SEC11A (AHRD V1 ***- C1BS39_9MAXI); contains Interpro domain(s) IPR001733 Peptidase S26B, eukaryotic signal peptidase "; GO:0016020 NbS00002963g0014.1 protein AED:0.41 eAED:0.65 QI:27|0|0.5|1|1|1|2|0|113; (*GB) gi|297745210|emb|CBI40290.3| (e_value=4e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G00585.1 (e_value=2e-18) | Symbols: | unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:251157-252284 REVERSE LENGTH=88;; (*ITAG) Solyc03g025910.2.1 (e_value=8e-25) genomic_reference:SL2.40ch03 gene_region:7702186-7707084 transcript_region:SL2.40ch03:7702186..7707084- functional_description:"Unknown Protein (AHRD V1)"; NbS00014857g0014.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.6|1|0.75|0.8|5|0|159; (*GB) gi|224128928|ref|XP_002329001.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=2e-47) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT3G02800.1 (e_value=2e-63) | Symbols: | Tyrosine phosphatase family protein | chr3:606638-607704 REVERSE LENGTH=203;; (*ITAG) Solyc05g055740.2.1 (e_value=1e-94) genomic_reference:SL2.40ch05 gene_region:64407381-64409767 transcript_region:SL2.40ch05:64407381..64409767+ go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00014857g0012.1 protein AED:0.23 eAED:0.23 QI:646|0.9|1|1|0.9|0.81|11|371|559; (*GB) gi|224128908|ref|XP_002328996.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2L4X1|BZW2_MUSMM (e_value=6e-63) Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus molossinus GN=Bzw2 PE=2 SV=1;; (*TAIR) AT5G36230.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411;; (*ITAG) Solyc05g055770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64423607-64429627 transcript_region:SL2.40ch05:64423607..64429627+ go_terms:GO:0031369 functional_description:"Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 **-- A8N5N1_COPC7); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0031369 NbS00014857g0016.1 protein AED:0.15 eAED:0.23 QI:35|0|0|1|0.33|0|4|0|695; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=1e-124) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=3e-117) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=6e-60) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g013280.2.1 (e_value=6e-127) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00036630g0002.1 protein AED:0.26 eAED:0.26 QI:511|0.8|0.66|1|1|1|6|0|341; (*GB) gi|356538692|ref|XP_003537835.1| (e_value=0.0) PREDICTED: UDP-galactose transporter 2-like [Glycine max];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=3e-169) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT5G42420.1 (e_value=1e-172) | Symbols: | Nucleotide-sugar transporter family protein | chr5:16968819-16970225 FORWARD LENGTH=350;; (*ITAG) Solyc12g095790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63252859-63256413 transcript_region:SL2.40ch12:63252859..63256413- go_terms:GO:0008514 functional_description:"Integral membrane protein like (AHRD V1 **-- B6TQ82_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00036630g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.5|1|1|1|6|0|261; (*GB) gi|225457731|ref|XP_002278176.1| (e_value=3e-142) PREDICTED: chaperone protein dnaJ 10 [Vitis vinifera];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=5e-102) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G21080.2 (e_value=1e-117) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:7378822-7380927 REVERSE LENGTH=304;; (*ITAG) Solyc12g095800.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63260262-63268516 transcript_region:SL2.40ch12:63260262..63268516- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 ***- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00036630g0017.1 protein AED:0.24 eAED:0.28 QI:13|0.33|0.25|1|0.66|0.5|4|0|486; (*GB) gi|359491894|ref|XP_002274136.2| (e_value=3e-173) PREDICTED: uncharacterized protein At1g76660-like [Vitis vinifera];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=1e-125) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT1G76660.1 (e_value=1e-126) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). | chr1:28769157-28771036 REVERSE LENGTH=431;; (*ITAG) Solyc12g095780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63245533-63248345 transcript_region:SL2.40ch12:63245533..63248345- functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q6K6Z8_ORYSJ)"; NbS00036630g0018.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.5|1|1|1|6|0|166; (*GB) gi|225457713|ref|XP_002277414.1| (e_value=6e-79) PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera];; (*SWP) sp|O14155|YE72_SCHPO (e_value=5e-37) UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=2 SV=1;; (*TAIR) AT1G21065.1 (e_value=9e-73) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). | chr1:7374210-7375644 FORWARD LENGTH=217;; (*ITAG) Solyc12g095770.1.1 (e_value=2e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63240062-63244620 transcript_region:SL2.40ch12:63240062..63244620+ functional_description:"YjbQ (AHRD V1 **-- C9SP80_VERA1); contains Interpro domain(s) IPR001602 Uncharacterised protein family UPF0047 "; NbS00014110g0006.1 protein AED:0.16 eAED:0.16 QI:15|0.83|0.57|1|1|1|7|0|713; (*GB) gi|359477496|ref|XP_003631985.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854837 [Vitis vinifera];; (*SWP) sp|P59326|YTHD1_MOUSE (e_value=2e-53) YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1;; (*TAIR) AT1G48110.2 (e_value=8e-174) | Symbols: ECT7 | evolutionarily conserved C-terminal region 7 | chr1:17770339-17772806 REVERSE LENGTH=639;; (*ITAG) Solyc12g099090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00014110g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|225439342|ref|XP_002270170.1| (e_value=7e-38) PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Vitis vinifera];; (*SWP) sp|P62981|RS27A_SOLTU (e_value=1e-36) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=8e-34) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc12g099030.1.1 (e_value=3e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64677240-64679496 transcript_region:SL2.40ch12:64677240..64679496+ go_terms:GO:0005840 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005840 NbS00014110g0007.1 protein AED:0.43 eAED:0.50 QI:0|0|0.33|1|0.5|0.33|3|59|73 NbS00008360g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|46241272|gb|AAS82859.1| (e_value=7e-91) geranyl diphosphate synthase small subunit [Antirrhinum majus];; (*SWP) sp|Q39108|GGR_ARATH (e_value=4e-36) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=3e-37) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc07g064660.1.1 (e_value=6e-146) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00008360g0003.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|46241272|gb|AAS82859.1| (e_value=4e-90) geranyl diphosphate synthase small subunit [Antirrhinum majus];; (*SWP) sp|Q39108|GGR_ARATH (e_value=8e-31) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=6e-32) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc07g064660.1.1 (e_value=1e-134) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00008360g0002.1 protein AED:0.59 eAED:0.59 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|224135433|ref|XP_002322072.1| (e_value=6e-25) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g064660.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00001685g0019.1 protein AED:0.08 eAED:0.08 QI:0|0.4|0.33|1|1|1|6|0|592; (*GB) gi|350538065|ref|NP_001234069.1| (e_value=0.0) invertase [Solanum lycopersicum];; (*SWP) sp|P29001|INVA_VIGRR (e_value=0.0) Acid beta-fructofuranosidase OS=Vigna radiata var. radiata GN=INVA PE=1 SV=1;; (*TAIR) AT1G12240.1 (e_value=0.0) | Symbols: ATBETAFRUCT4, VAC-INV | Glycosyl hydrolases family 32 protein | chr1:4153699-4157457 FORWARD LENGTH=664;; (*ITAG) Solyc08g079080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59888555-59892754 transcript_region:SL2.40ch08:59888555..59892754+ go_terms:GO:0004553 functional_description:"Acid beta-fructofuranosidase (AHRD V1 **-- Q575T1_WHEAT); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004553 NbS00001685g0005.1 protein AED:0.19 eAED:0.19 QI:421|1|1|1|0.76|0.71|14|361|384; (*GB) gi|255583646|ref|XP_002532578.1| (e_value=0.0) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q9SUW0|TPPG_ARATH (e_value=0.0) Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana GN=TPPG PE=2 SV=1;; (*TAIR) AT4G22590.1 (e_value=0.0) | Symbols: TPPG | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:11893707-11895371 REVERSE LENGTH=377;; (*ITAG) Solyc08g079060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59876550-59879243 transcript_region:SL2.40ch08:59876550..59879243+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 ***- D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00001685g0017.1 protein AED:0.20 eAED:0.20 QI:0|1|0.9|1|1|1|10|0|271; (*GB) gi|350538213|ref|NP_001234076.1| (e_value=4e-163) transaldolase ToTAL2 [Solanum lycopersicum];; (*SWP) sp|A3PBP3|TAL_PROM0 (e_value=2e-38) Transaldolase OS=Prochlorococcus marinus (strain MIT 9301) GN=tal PE=3 SV=1;; (*TAIR) AT1G12230.1 (e_value=1e-117) | Symbols: | Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=405;; (*ITAG) Solyc08g079070.2.1 (e_value=2e-166) genomic_reference:SL2.40ch08 gene_region:59880581-59886513 transcript_region:SL2.40ch08:59880581..59886513+ go_terms:GO:0004801 functional_description:"Transaldolase (AHRD V1 **** D6N3G8_GOSHI); contains Interpro domain(s) IPR001585 Transaldolase "; GO:0004801 NbS00001685g0001.1 protein AED:0.46 eAED:0.68 QI:0|0|0|0.5|1|1|4|0|346; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-20) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC23793413g0001.1 protein AED:0.05 eAED:0.05 QI:26|1|0|1|0|0|2|61|25 NbS00024319g0012.1 protein AED:0.07 eAED:0.07 QI:123|1|0.5|1|0|0|2|0|44 NbS00024319g0014.1 protein AED:0.14 eAED:0.14 QI:0|1|0.8|1|0.5|0.6|5|0|391; (*GB) gi|359493612|ref|XP_003634635.1| (e_value=3e-145) PREDICTED: uncharacterized protein LOC100264164 [Vitis vinifera];; (*TAIR) AT1G53210.1 (e_value=5e-147) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc07g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62603490-62608714 transcript_region:SL2.40ch07:62603490..62608714- go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00024319g0013.1 protein AED:0.15 eAED:0.15 QI:241|1|1|1|1|1|4|547|303; (*GB) gi|224056541|ref|XP_002298901.1| (e_value=2e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=1e-20) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT3G58120.1 (e_value=1e-89) | Symbols: ATBZIP61, BZIP61 | Basic-leucine zipper (bZIP) transcription factor family protein | chr3:21521289-21523078 REVERSE LENGTH=329;; (*ITAG) Solyc07g062710.2.1 (e_value=3e-122) genomic_reference:SL2.40ch07 gene_region:62618690-62620559 transcript_region:SL2.40ch07:62618690..62620559- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-** D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0003677 NbS00005836g0005.1 protein AED:0.37 eAED:0.38 QI:0|0.4|0.5|0.66|0.8|0.66|6|0|168; (*GB) gi|340248744|dbj|BAK52670.1| (e_value=6e-59) cytokinin riboside 5'-monophosphate phosphoribohydrolase [Petunia x hybrida];; (*SWP) sp|Q8GW29|LOG7_ARATH (e_value=1e-51) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2;; (*TAIR) AT5G06300.1 (e_value=9e-53) | Symbols: | Putative lysine decarboxylase family protein | chr5:1922042-1925278 REVERSE LENGTH=217;; (*ITAG) Solyc04g081290.2.1 (e_value=3e-60) genomic_reference:SL2.40ch04 gene_region:62925052-62928360 transcript_region:SL2.40ch04:62925052..62928360+ go_terms:GO:0016831,GO:0042803 functional_description:"Lysine decarboxylase-like protein (AHRD V1 **-- B6T4M5_MAIZE); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00019609g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.5|1|0.66|0.5|4|642|592; (*GB) gi|66737320|gb|AAY54606.1| (e_value=0.0) NRG1 [Nicotiana benthamiana];; (*SWP) sp|Q9FKZ1|DRL42_ARATH (e_value=2e-83) Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=2 SV=1;; (*TAIR) AT5G66900.1 (e_value=1e-84) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:26714931-26717757 REVERSE LENGTH=809;; (*ITAG) Solyc02g090380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46515185-46519334 transcript_region:SL2.40ch02:46515185..46519334+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00019609g0014.1 protein AED:0.28 eAED:0.30 QI:512|0.55|0.8|1|0.44|0.5|10|684|270; (*GB) gi|76160945|gb|ABA40436.1| (e_value=2e-146) serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum];; (*SWP) sp|Q940H6|SRK2E_ARATH (e_value=2e-128) Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1;; (*TAIR) AT4G33950.2 (e_value=3e-130) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | Protein kinase superfamily protein | chr4:16272819-16274657 FORWARD LENGTH=314;; (*ITAG) Solyc02g090390.2.1 (e_value=3e-151) genomic_reference:SL2.40ch02 gene_region:46520412-46525986 transcript_region:SL2.40ch02:46520412..46525986- go_terms:GO:0004683 functional_description:"Serine-threonine protein kinase (AHRD V1 **** O24395_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004683 NbS00019609g0013.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|3|0|134; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-38) hypothetical protein [Nicotiana tabacum]; NbS00020891g0010.1 protein AED:0.12 eAED:0.12 QI:791|1|1|1|0.71|0.62|8|418|507; (*GB) gi|225450464|ref|XP_002280159.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At2g42960 [Vitis vinifera];; (*SWP) sp|Q8LEB6|Y5185_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana GN=At5g18500 PE=1 SV=1;; (*TAIR) AT1G56720.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:21263630-21265559 REVERSE LENGTH=492;; (*ITAG) Solyc01g101100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82707636-82712173 transcript_region:SL2.40ch01:82707636..82712173- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020891g0007.1 protein AED:0.13 eAED:0.13 QI:351|0.6|0.72|0.90|0.3|0.27|11|409|374; (*GB) gi|255569989|ref|XP_002525957.1| (e_value=0.0) ecotropic viral integration site, putative [Ricinus communis];; (*SWP) sp|Q96CN4|EVI5L_HUMAN (e_value=6e-54) EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1;; (*TAIR) AT5G15930.1 (e_value=1e-175) | Symbols: PAM1 | plant adhesion molecule 1 | chr5:5200329-5202250 FORWARD LENGTH=356;; (*ITAG) Solyc01g101090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82700183-82706494 transcript_region:SL2.40ch01:82700183..82706494+ go_terms:GO:0005097,GO:0030165 functional_description:"TBC1 domain family member CG11727 (AHRD V1 **-* Y1727_DROME); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005097,GO:0030165 NbS00027473g0002.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|2|464|82; (*GB) gi|255543645|ref|XP_002512885.1| (e_value=4e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27435.1 (e_value=1e-33) | Symbols: | unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9527956-9528814 REVERSE LENGTH=81;; (*ITAG) Solyc01g009850.2.1 (e_value=9e-27) genomic_reference:SL2.40ch01 gene_region:4369328-4375850 transcript_region:SL2.40ch01:4369328..4375850+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018542g0006.1 protein AED:0.10 eAED:0.10 QI:161|0.62|0.55|1|0.75|0.55|9|0|1398; (*GB) gi|296085937|emb|CBI31378.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G22060.1 (e_value=2e-22) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999;; (*ITAG) Solyc11g007900.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2123346-2132562 transcript_region:SL2.40ch11:2123346..2132562+ functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00025931g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|255; (*GB) gi|350538023|ref|NP_001233811.1| (e_value=2e-100) uncharacterized protein LOC100147720 [Solanum lycopersicum];; (*SWP) sp|O49255|NAC29_ARATH (e_value=1e-56) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=5e-92) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc01g009860.2.1 (e_value=4e-103) genomic_reference:SL2.40ch01 gene_region:4382336-4384348 transcript_region:SL2.40ch01:4382336..4384348- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00038989g0006.1 protein AED:0.16 eAED:0.16 QI:228|0.76|0.85|1|0.53|0.64|14|389|460; (*GB) gi|255586463|ref|XP_002533875.1| (e_value=0.0) DNA-directed RNA polymerase II, putative [Ricinus communis];; (*TAIR) AT4G08540.1 (e_value=0.0) | Symbols: | DNA-directed RNA polymerase II protein | chr4:5433760-5436326 FORWARD LENGTH=473;; (*ITAG) Solyc04g072440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57042643-57050951 transcript_region:SL2.40ch04:57042643..57050951+ functional_description:"MRNA complete cds clone RAFL23-27-B01 (AHRD V1 **-- Q67Z09_ARATH)"; NbS00038989g0005.1 protein AED:0.21 eAED:0.21 QI:178|1|0.83|1|0.8|0.66|6|0|441; (*GB) gi|225459407|ref|XP_002285817.1| (e_value=0.0) PREDICTED: uncharacterized protein At4g37920, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=7e-105) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT1G36320.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:13671876-13673939 FORWARD LENGTH=414;; (*ITAG) Solyc04g072400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57015439-57020648 transcript_region:SL2.40ch04:57015439..57020648+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00011936g0010.1 protein AED:0.26 eAED:0.26 QI:132|1|1|1|1|1|8|507|354; (*GB) gi|224133078|ref|XP_002327956.1| (e_value=1e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q16560|U1SBP_HUMAN (e_value=2e-45) U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Homo sapiens GN=SNRNP35 PE=1 SV=1;; (*TAIR) AT2G43370.1 (e_value=7e-115) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18013431-18015376 FORWARD LENGTH=333;; (*ITAG) Solyc09g098390.2.1 (e_value=2e-166) genomic_reference:SL2.40ch09 gene_region:67491180-67496208 transcript_region:SL2.40ch09:67491180..67496208- go_terms:GO:0003676,GO:0000166 functional_description:"U1 small nuclear ribonucleoprotein protein (AHRD V1 *--- D3B3S8_POLPA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00011936g0005.1 protein AED:0.18 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|156 NbS00011936g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|1271; (*GB) gi|147865107|emb|CAN79409.1| (e_value=0.0) hypothetical protein VITISV_038451 [Vitis vinifera];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G07280.1 (e_value=0.0) | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192;; (*ITAG) Solyc09g098420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67507878-67511690 transcript_region:SL2.40ch09:67507878..67511690+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00011936g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|1|4|0|729; (*GB) gi|224095051|ref|XP_002310338.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9M2V6|AB17G_ARATH (e_value=4e-71) ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1;; (*TAIR) AT3G55100.1 (e_value=3e-72) | Symbols: | ABC-2 type transporter family protein | chr3:20420352-20422340 REVERSE LENGTH=662;; (*ITAG) Solyc09g098410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67501233-67504013 transcript_region:SL2.40ch09:67501233..67504013+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 19 (AHRD V1 *-*- AB19G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00011087g0003.1 protein AED:0.11 eAED:0.11 QI:213|1|1|1|0.5|0.33|3|794|888; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-86) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=8e-75) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc10g047320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00011087g0009.1 protein AED:0.19 eAED:0.19 QI:120|0.9|0.81|1|0.8|0.81|11|0|496; (*GB) gi|359472703|ref|XP_002282030.2| (e_value=4e-177) PREDICTED: transcription factor HBP-1b(c1)-like [Vitis vinifera];; (*SWP) sp|Q9SX27|PAN_ARATH (e_value=5e-132) Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1;; (*TAIR) AT1G68640.1 (e_value=4e-133) | Symbols: PAN | bZIP transcription factor family protein | chr1:25769739-25772303 REVERSE LENGTH=452;; (*ITAG) Solyc05g009660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3852729-3858146 transcript_region:SL2.40ch05:3852729..3858146- go_terms:GO:0005515,GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003700 NbS00011087g0005.1 protein AED:0.49 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|130; (*ITAG) Solyc12g094710.1.1 (e_value=2e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63190934-63194536 transcript_region:SL2.40ch12:63190934..63194536- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 *-*- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00032958g0001.1 protein AED:0.05 eAED:0.05 QI:175|1|1|1|0.6|0.5|6|363|1313; (*GB) gi|225449591|ref|XP_002279262.1| (e_value=0.0) PREDICTED: elongator complex protein 1 [Vitis vinifera];; (*SWP) sp|Q9FNA4|ELP1_ARATH (e_value=0.0) Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1;; (*TAIR) AT5G13680.1 (e_value=0.0) | Symbols: ELO2, ABO1 | IKI3 family protein | chr5:4410522-4415471 REVERSE LENGTH=1319;; (*ITAG) Solyc05g054630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63646653-63652887 transcript_region:SL2.40ch05:63646653..63652887+ go_terms:GO:0003711 functional_description:"Elongator complex protein (AHRD V1 ***- C6H856_AJECH); contains Interpro domain(s) IPR006849 IKI3 "; GO:0003711 NbS00032958g0009.1 protein AED:0.17 eAED:0.18 QI:0|0.36|0.41|0.91|0.90|0.91|12|0|1103; (*GB) gi|255575120|ref|XP_002528465.1| (e_value=0.0) 2-oxoglutarate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q54JE4|ODO1_DICDI (e_value=0.0) 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1;; (*TAIR) AT3G55410.1 (e_value=0.0) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00037788g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|247; (*GB) gi|225435279|ref|XP_002285068.1| (e_value=6e-70) PREDICTED: fasciclin-like arabinogalactan protein 11-like [Vitis vinifera];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=2e-60) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=1e-61) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc11g069250.1.1 (e_value=5e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50966944-50968801 transcript_region:SL2.40ch11:50966944..50968801- go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein (AHRD V1 ***- D5KXI3_9MYRT); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00037788g0009.1 protein AED:0.31 eAED:0.32 QI:103|0.71|0.75|1|0.57|0.62|8|165|265; (*GB) gi|296088545|emb|CBI37536.3| (e_value=4e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1R4|AB10I_ARATH (e_value=5e-76) ABC transporter I family member 10, chloroplastic OS=Arabidopsis thaliana GN=ABCI10 PE=1 SV=1;; (*TAIR) AT4G33460.1 (e_value=4e-77) | Symbols: ATNAP13, EMB2751 | ABC transporter family protein | chr4:16098325-16100113 REVERSE LENGTH=271;; (*ITAG) Solyc11g069260.1.1 (e_value=7e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50971290-50975328 transcript_region:SL2.40ch11:50971290..50975328- go_terms:GO:0017111,GO:0016887 functional_description:"Cobalt import ATP-binding protein cbiO 2 (AHRD V1 ***- B6U9M1_MAIZE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00037788g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|255568038|ref|XP_002524996.1| (e_value=1e-30) bile acid:sodium symporter, putative [Ricinus communis];; (*TAIR) AT3G56160.1 (e_value=2e-29) | Symbols: | Sodium Bile acid symporter family | chr3:20837733-20841541 REVERSE LENGTH=436;; (*ITAG) Solyc07g014740.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:5203700-5206540 transcript_region:SL2.40ch07:5203700..5206540- functional_description:"Bile acid sodium symporter (AHRD V1 *-*- D7LVD0_ARALY)"; NbS00030819g0006.1 protein AED:0.23 eAED:0.25 QI:0|0.66|0.5|1|1|0.75|4|201|376; (*GB) gi|297737265|emb|CBI26466.3| (e_value=1e-107) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13960.1 (e_value=2e-47) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc12g096070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63486942-63490380 transcript_region:SL2.40ch12:63486942..63490380+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 5 (AHRD V1 **-- Q6AWY4_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00030819g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|69 NbS00003017g0007.1 protein AED:0.21 eAED:0.21 QI:159|0.5|0.66|1|0.5|0.33|3|150|306; (*GB) gi|68299217|emb|CAJ13709.1| (e_value=2e-86) glutathione S-transferase 12 [Capsicum chinense];; (*SWP) sp|Q9CA57|GSTUA_ARATH (e_value=3e-55) Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1;; (*TAIR) AT1G74590.1 (e_value=2e-56) | Symbols: ATGSTU10, GSTU10 | glutathione S-transferase TAU 10 | chr1:28023887-28024666 REVERSE LENGTH=232;; (*ITAG) Solyc03g116120.1.1 (e_value=7e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59682321-59683060 transcript_region:SL2.40ch03:59682321..59683060- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 12 (AHRD V1 **** Q4LAW7_CAPCH); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00003017g0102.1 protein AED:0.32 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|405 NbS00003017g0103.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|206 NbS00003017g0107.1 protein AED:0.40 eAED:0.61 QI:0|0|0|0.75|1|1|4|0|410 NbS00003017g0111.1 protein AED:0.39 eAED:1.00 QI:0|0|0|1|1|1|2|0|148 NbS00043118g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|0.75|1|1|4|0|179; (*GB) gi|147800081|emb|CAN77652.1| (e_value=2e-109) hypothetical protein VITISV_032323 [Vitis vinifera];; (*SWP) sp|Q9C641|EFGM_ARATH (e_value=9e-106) Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1;; (*TAIR) AT2G45030.1 (e_value=3e-107) | Symbols: | Translation elongation factor EFG/EF2 protein | chr2:18572411-18576756 FORWARD LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbS00033752g0006.1 protein AED:0.12 eAED:0.12 QI:184|1|1|1|1|1|2|316|87 NbS00033752g0005.1 protein AED:0.17 eAED:0.17 QI:345|0.91|1|1|0.91|0.84|13|376|555; (*GB) gi|12003285|gb|AAG43519.1|AF210699_1 (e_value=0.0) granule-bound starch synthase [Perilla frutescens];; (*SWP) sp|Q43092|SSG1_PEA (e_value=0.0) Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT1G32900.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:11920582-11923506 REVERSE LENGTH=610;; (*ITAG) Solyc08g083320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62981703-62985075 transcript_region:SL2.40ch08:62981703..62985075- go_terms:GO:0004373,GO:0005515 functional_description:"Granule-bound starch synthase (AHRD V1 **** B0ZTE3_SOLTU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00028174g0006.1 protein AED:0.21 eAED:0.21 QI:239|0.66|0.25|1|1|1|4|0|465; (*GB) gi|225449392|ref|XP_002282536.1| (e_value=0.0) PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|O22286|BPM3_ARATH (e_value=7e-161) BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1;; (*TAIR) AT2G39760.1 (e_value=6e-162) | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains containing protein | chr2:16583213-16585983 FORWARD LENGTH=408;; (*ITAG) Solyc05g052960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62276946-62282506 transcript_region:SL2.40ch05:62276946..62282506- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00028174g0009.1 protein AED:0.24 eAED:0.25 QI:0|0.66|0.4|1|0.55|0.5|10|0|656; (*GB) gi|255566464|ref|XP_002524217.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|O22285|PMTB_ARATH (e_value=0.0) Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1;; (*TAIR) AT2G39750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16578986-16582281 REVERSE LENGTH=694;; (*ITAG) Solyc05g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62285580-62291311 transcript_region:SL2.40ch05:62285580..62291311+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00025128g0005.1 protein AED:0.04 eAED:0.04 QI:258|1|1|1|1|1|3|693|119; (*GB) gi|356556098|ref|XP_003546364.1| (e_value=5e-60) PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max];; (*SWP) sp|Q78P75|DYL2_RAT (e_value=5e-42) Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1;; (*TAIR) AT4G15930.1 (e_value=1e-56) | Symbols: | Dynein light chain type 1 family protein | chr4:9036344-9037825 FORWARD LENGTH=123;; (*ITAG) Solyc01g066590.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:67086017-67089572 transcript_region:SL2.40ch01:67086017..67089572- go_terms:GO:0008092,GO:0042803 functional_description:"Dynein light chain 2 cytoplasmic (AHRD V1 ***- B5XH01_SALSA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0008092,GO:0042803 NbS00025128g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|0.92|0.85|14|217|1432; (*GB) gi|359477252|ref|XP_003631953.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: Fanconi anemia group I protein-like [Vitis vinifera];; (*SWP) sp|Q9NVI1|FANCI_HUMAN (e_value=6e-45) Fanconi anemia group I protein OS=Homo sapiens GN=FANCI PE=1 SV=4;; (*TAIR) AT5G49110.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19900203-19905925 FORWARD LENGTH=1469;; (*ITAG) Solyc01g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67092823-67099945 transcript_region:SL2.40ch01:67092823..67099945- functional_description:"Fanconi anemia group I protein (AHRD V1 *--- FANCI_HUMAN)"; NbS00015352g0005.1 protein AED:0.15 eAED:0.15 QI:77|1|1|1|1|1|6|372|258; (*GB) gi|82623429|gb|ABB87129.1| (e_value=3e-153) 60S ribosomal protein L7A-like [Solanum tuberosum];; (*SWP) sp|P49692|RL7A1_ARATH (e_value=7e-144) 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2;; (*TAIR) AT2G47610.1 (e_value=6e-145) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g064460.2.1 (e_value=3e-156) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00036585g0010.1 protein AED:0.18 eAED:0.18 QI:391|1|1|1|1|1|2|647|187; (*GB) gi|359477390|ref|XP_002280477.2| (e_value=3e-104) PREDICTED: CWF19-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q8BG79|C19L2_MOUSE (e_value=3e-43) CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=2 SV=1;; (*TAIR) AT1G56290.1 (e_value=2e-96) | Symbols: | CwfJ-like family protein | chr1:21075939-21078608 FORWARD LENGTH=692;; (*ITAG) Solyc09g083420.2.1 (e_value=1e-107) genomic_reference:SL2.40ch09 gene_region:64474162-64480181 transcript_region:SL2.40ch09:64474162..64480181+ functional_description:"CWF19-like 2 (AHRD V1 *-*- B7TJ18_PIG); contains Interpro domain(s) IPR006768 Protein similar to CwfJ, C-terminal 1 "; NbS00036585g0003.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.66|1|1|3|0|168; (*ITAG) Solyc09g083420.2.1 (e_value=5e-18) genomic_reference:SL2.40ch09 gene_region:64474162-64480181 transcript_region:SL2.40ch09:64474162..64480181+ functional_description:"CWF19-like 2 (AHRD V1 *-*- B7TJ18_PIG); contains Interpro domain(s) IPR006768 Protein similar to CwfJ, C-terminal 1 "; NbS00026279g0007.1 protein AED:0.18 eAED:0.18 QI:372|1|1|1|0.6|0.66|6|210|193; (*GB) gi|18565124|dbj|BAB84584.1| (e_value=3e-125) transcription factor LIM [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=3e-89) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=2e-111) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc04g077780.2.1 (e_value=2e-124) genomic_reference:SL2.40ch04 gene_region:60273625-60275883 transcript_region:SL2.40ch04:60273625..60275883- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00026279g0005.1 protein AED:0.09 eAED:0.19 QI:0|1|0.5|1|1|1|2|254|462; (*GB) gi|225458852|ref|XP_002283336.1| (e_value=0.0) PREDICTED: F-box protein At3g12350 [Vitis vinifera];; (*SWP) sp|Q84WW1|FB140_ARATH (e_value=6e-119) F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=2 SV=1;; (*TAIR) AT3G12350.1 (e_value=5e-120) | Symbols: | F-box family protein | chr3:3931626-3933104 FORWARD LENGTH=422; NbS00031319g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.75|1|1|4|0|1199; (*GB) gi|255543813|ref|XP_002512969.1| (e_value=0.0) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc07g032100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:34994261-35003424 transcript_region:SL2.40ch07:34994261..35003424+ go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00004432g0009.1 protein AED:0.21 eAED:0.21 QI:274|0.66|0.61|1|0.75|0.84|13|584|464; (*GB) gi|225461038|ref|XP_002281399.1| (e_value=6e-110) PREDICTED: trafficking protein particle complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q86K94|TPPC3_DICDI (e_value=4e-54) Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2;; (*TAIR) AT5G54750.1 (e_value=1e-106) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc01g096530.2.1 (e_value=1e-114) genomic_reference:SL2.40ch01 gene_region:79366553-79369764 transcript_region:SL2.40ch01:79366553..79369764+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6U299_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00004432g0010.1 protein AED:0.30 eAED:0.30 QI:330|0.92|0.96|1|0.8|0.80|26|462|1088; (*GB) gi|296087847|emb|CBI35103.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G06970.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr5:2158431-2166004 REVERSE LENGTH=1101;; (*ITAG) Solyc01g096540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79369999-79389913 transcript_region:SL2.40ch01:79369999..79389913- functional_description:"AT5g06970/MOJ9_14 (AHRD V1 **-- Q8RX56_ARATH); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00055481g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|0.33|0.5|4|147|462; (*GB) gi|225430794|ref|XP_002270711.1| (e_value=2e-78) PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein-like [Vitis vinifera];; (*SWP) sp|Q9SCQ7|AN32_ARATH (e_value=4e-72) Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana GN=At3g50690 PE=2 SV=1;; (*TAIR) AT3G50690.1 (e_value=3e-73) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:18835271-18837097 REVERSE LENGTH=447;; (*ITAG) Solyc03g034080.2.1 (e_value=1e-96) genomic_reference:SL2.40ch03 gene_region:10050837-10054509 transcript_region:SL2.40ch03:10050837..10054509- go_terms:GO:0005515 functional_description:"Acidic leucine-rich nuclear phosphoprotein 32 family member A (AHRD V1 *-*- B6UH95_MAIZE); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00055456g0003.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|133; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-38) hypothetical protein [Nicotiana tabacum]; NbS00055456g0004.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|0|0|2|0|146; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-38) hypothetical protein [Nicotiana tabacum]; NbS00002690g0017.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|489; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=0.0) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=0.0) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=2e-96) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00002690g0018.1 protein AED:0.06 eAED:0.06 QI:247|0.66|0.75|1|0.66|0.75|4|7|395; (*GB) gi|81238594|gb|ABB60055.1| (e_value=1e-148) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|P15455|CRU4_ARATH (e_value=3e-89) 12S seed storage protein CRU4 OS=Arabidopsis thaliana GN=CRU4 PE=1 SV=2;; (*TAIR) AT5G44120.3 (e_value=3e-90) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00002690g0024.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|0.5|0.33|3|0|226; (*GB) gi|225437856|ref|XP_002264085.1| (e_value=4e-76) PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera];; (*SWP) sp|P24397|HY6H_HYONI (e_value=1e-43) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT2G44800.1 (e_value=3e-42) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:18467004-18468551 FORWARD LENGTH=357;; (*ITAG) Solyc09g066310.2.1 (e_value=4e-127) genomic_reference:SL2.40ch09 gene_region:60345173-60347609 transcript_region:SL2.40ch09:60345173..60347609- go_terms:GO:0045431 functional_description:"Flavonol synthase/flavanone 3-hydroxylase (AHRD V1 **-* B6SHP9_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00002690g0021.1 protein AED:0.07 eAED:0.07 QI:14|1|0|1|1|1|3|0|68; (*ITAG) Solyc09g072570.2.1 (e_value=6e-13) genomic_reference:SL2.40ch09 gene_region:60600116-60606656 transcript_region:SL2.40ch09:60600116..60606656- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00002690g0025.1 protein AED:0.12 eAED:0.16 QI:12|0.4|0.33|1|0.8|0.66|6|0|518; (*GB) gi|81238594|gb|ABB60055.1| (e_value=2e-172) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|Q6ERU3|GLUB5_ORYSJ (e_value=8e-110) Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=5e-103) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00002690g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|139 NbS00003907g0012.1 protein AED:0.09 eAED:0.10 QI:0|0.62|0.44|0.88|0.75|0.44|9|0|870; (*GB) gi|255569399|ref|XP_002525667.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6ZPJ0|TEX2_MOUSE (e_value=1e-11) Testis-expressed sequence 2 protein OS=Mus musculus GN=Tex2 PE=1 SV=2;; (*TAIR) AT1G17820.1 (e_value=2e-179) | Symbols: | Putative integral membrane protein conserved region (DUF2404) | chr1:6131751-6135115 REVERSE LENGTH=803;; (*ITAG) Solyc03g019770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6700644-6709961 transcript_region:SL2.40ch03:6700644..6709961+ go_terms:GO:0035091 functional_description:"Uncharacterized PH domain-containing protein (AHRD V1 *--- C5GPT3_AJEDR); contains Interpro domain(s) IPR019411 Protein of unknown function DUF2404, transmembrane "; GO:0035091 NbS00003907g0013.1 protein AED:0.11 eAED:0.11 QI:183|1|0.8|1|1|1|5|209|301; (*GB) gi|78191420|gb|ABB29931.1| (e_value=6e-155) P40-like protein [Solanum tuberosum];; (*SWP) sp|O80377|RSSA_DAUCA (e_value=7e-137) 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1;; (*TAIR) AT1G72370.2 (e_value=7e-137) | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal protein SA | chr1:27243148-27244842 REVERSE LENGTH=294;; (*ITAG) Solyc03g019780.2.1 (e_value=3e-160) genomic_reference:SL2.40ch03 gene_region:6711619-6713828 transcript_region:SL2.40ch03:6711619..6713828- go_terms:GO:0043236 functional_description:"40S ribosomal protein SA (AHRD V1 ***- B6T6X2_MAIZE); contains Interpro domain(s) IPR005707 Ribosomal protein S2, eukaryotic/archaeal "; GO:0043236 NbS00003907g0006.1 protein AED:0.31 eAED:0.31 QI:461|0.9|0.90|1|0.9|0.81|11|1044|238; (*GB) gi|329741905|gb|AEB98600.1| (e_value=1e-163) alpha-galactosidase [Nicotiana tabacum];; (*SWP) sp|Q42656|AGAL_COFAR (e_value=4e-139) Alpha-galactosidase OS=Coffea arabica PE=1 SV=1;; (*TAIR) AT5G08370.1 (e_value=1e-128) | Symbols: AtAGAL2, AGAL2 | alpha-galactosidase 2 | chr5:2691116-2693441 REVERSE LENGTH=396;; (*ITAG) Solyc03g019790.2.1 (e_value=2e-152) genomic_reference:SL2.40ch03 gene_region:6715747-6721534 transcript_region:SL2.40ch03:6715747..6721534- go_terms:GO:0004557,GO:0008456 functional_description:"Alpha-galactosidase (AHRD V1 **** Q9SP05_SOLLC); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557,GO:0008456 NbS00015597g0011.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|305; (*GB) gi|255581178|ref|XP_002531402.1| (e_value=2e-101) N-acetyltransferase, putative [Ricinus communis];; (*TAIR) AT1G24040.2 (e_value=2e-96) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:8505794-8506753 REVERSE LENGTH=319;; (*ITAG) Solyc05g005900.2.1 (e_value=3e-166) genomic_reference:SL2.40ch05 gene_region:690085-691952 transcript_region:SL2.40ch05:690085..691952- go_terms:GO:0008152 functional_description:"GCN5-related protein (AHRD V1 **-- B2D2G9_BRAOL); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00015597g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|168; (*GB) gi|225459459|ref|XP_002285833.1| (e_value=9e-87) PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera];; (*SWP) sp|P42732|RR13_ARATH (e_value=1e-79) 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1;; (*TAIR) AT5G14320.1 (e_value=1e-80) | Symbols: | Ribosomal protein S13/S18 family | chr5:4617839-4618772 REVERSE LENGTH=169;; (*ITAG) Solyc05g005880.2.1 (e_value=5e-97) genomic_reference:SL2.40ch05 gene_region:683410-685491 transcript_region:SL2.40ch05:683410..685491+ go_terms:GO:0003676,GO:0005840 functional_description:"30S ribosomal protein S13 (AHRD V1 ***- B6TG65_MAIZE); contains Interpro domain(s) IPR019980 Ribosomal protein S13, bacterial-type "; GO:0003676,GO:0005840 NbS00015597g0012.1 protein AED:0.39 eAED:0.39 QI:0|0.71|0.5|0.75|1|0.87|8|0|373; (*GB) gi|255581176|ref|XP_002531401.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=5e-89) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G24030.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:8503394-8505195 FORWARD LENGTH=361;; (*ITAG) Solyc05g024290.2.1 (e_value=2e-94) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbC25094798g0001.1 protein AED:0.13 eAED:0.15 QI:0|0|0|1|0|0|2|0|119; (*ITAG) Solyc04g016320.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:7109276-7113214 transcript_region:SL2.40ch04:7109276..7113214- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *--- D7KDG7_ARALY); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00005403g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|356543792|ref|XP_003540344.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100817529 [Glycine max];; (*TAIR) AT4G28240.1 (e_value=7e-22) | Symbols: | Wound-responsive family protein | chr4:13997979-13998239 REVERSE LENGTH=86;; (*ITAG) Solyc07g054730.1.1 (e_value=2e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60279267-60279557 transcript_region:SL2.40ch07:60279267..60279557- functional_description:"Wound-responsive protein-related (AHRD V1 ***- A8IXM2_BRACM)"; NbS00012419g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|592; (*GB) gi|224133420|ref|XP_002321563.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJP6|PUB38_ARATH (e_value=7e-168) U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1;; (*TAIR) AT5G65200.1 (e_value=5e-169) | Symbols: PUB38, ATPUB38 | plant U-box 38 | chr5:26048173-26049843 REVERSE LENGTH=556;; (*ITAG) Solyc03g113870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57980937-57982523 transcript_region:SL2.40ch03:57980937..57982523+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 *--- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00043893g0001.1 protein AED:0.35 eAED:0.38 QI:135|0.66|0.85|1|1|1|7|0|364; (*GB) gi|224077064|ref|XP_002305116.1| (e_value=1e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33855.1 (e_value=5e-44) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14324717-14325151 REVERSE LENGTH=144;; (*ITAG) Solyc02g077690.2.1 (e_value=2e-88) genomic_reference:SL2.40ch02 gene_region:37157811-37162830 transcript_region:SL2.40ch02:37157811..37162830+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055267g0009.1 protein AED:0.10 eAED:0.10 QI:426|1|0.9|1|1|1|10|568|602; (*GB) gi|335353076|gb|AEH42667.1| (e_value=0.0) mitogen-activated protein kinase 10 [Solanum lycopersicum];; (*SWP) sp|Q9LUC3|MPK19_ARATH (e_value=0.0) Mitogen-activated protein kinase 19 OS=Arabidopsis thaliana GN=MPK19 PE=2 SV=2;; (*TAIR) AT3G14720.1 (e_value=0.0) | Symbols: ATMPK19, MPK19 | MAP kinase 19 | chr3:4946057-4948906 FORWARD LENGTH=598;; (*ITAG) Solyc07g062080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62129987-62135063 transcript_region:SL2.40ch07:62129987..62135063+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 18 (AHRD V1 **** D7KKI7_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00055267g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|0.8|0.5|0.6|5|0|744; (*GB) gi|255562524|ref|XP_002522268.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q803A0|JADE1_DANRE (e_value=6e-32) Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1;; (*TAIR) AT1G17030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc07g062090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62135492-62137556 transcript_region:SL2.40ch07:62135492..62137556- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00009062g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.8|1|1|1|10|406|1131; (*GB) gi|76880150|dbj|BAE45850.1| (e_value=0.0) DNA polymerase [Nicotiana tabacum];; (*SWP) sp|P52026|DPO1_GEOSE (e_value=2e-30) DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2;; (*TAIR) AT1G50840.1 (e_value=0.0) | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839277-18844313 FORWARD LENGTH=1050;; (*ITAG) Solyc07g064330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63745650-63754744 transcript_region:SL2.40ch07:63745650..63754744- go_terms:GO:0003676,GO:0006260,GO:0005622 functional_description:"DNA polymerase (AHRD V1 ***- Q3LHT0_TOBAC); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0003676,GO:0006260,GO:0005622 NbS00009062g0016.1 protein AED:0.11 eAED:0.11 QI:0|1|0.6|1|1|1|5|0|422; (*GB) gi|224126397|ref|XP_002319828.1| (e_value=7e-180) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=3e-148) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=2e-173) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc07g064340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63755719-63759162 transcript_region:SL2.40ch07:63755719..63759162- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009062g0003.1 protein AED:0.20 eAED:0.20 QI:356|1|0.66|1|0|0|3|59|165; (*GB) gi|224117480|ref|XP_002317585.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54850.1 (e_value=2e-18) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22280755-22281363 REVERSE LENGTH=202;; (*ITAG) Solyc07g064320.1.1 (e_value=2e-73) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63742864-63743364 transcript_region:SL2.40ch07:63742864..63743364- functional_description:"Unknown Protein (AHRD V1)"; NbS00009062g0017.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|327; (*GB) gi|147822536|emb|CAN68396.1| (e_value=2e-68) hypothetical protein VITISV_021096 [Vitis vinifera];; (*TAIR) AT1G32120.1 (e_value=9e-53) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064360.1.1 (e_value=4e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63767805-63769997 transcript_region:SL2.40ch07:63767805..63769997- functional_description:"Aminotransferase-like protein (AHRD V1 *--- Q68UQ8_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00009062g0018.1 protein AED:0.34 eAED:0.33 QI:0|0|0|1|0|0|2|0|195; (*GB) gi|359494119|ref|XP_003634722.1| (e_value=3e-36) PREDICTED: uncharacterized protein LOC100852441 [Vitis vinifera];; (*TAIR) AT1G32120.1 (e_value=5e-27) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064360.1.1 (e_value=1e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63767805-63769997 transcript_region:SL2.40ch07:63767805..63769997- functional_description:"Aminotransferase-like protein (AHRD V1 *--- Q68UQ8_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00022728g0006.1 protein AED:0.26 eAED:0.29 QI:268|0.84|0.85|1|0.63|0.8|20|382|610; (*GB) gi|585452|sp|P37225.1|MAON_SOLTU (e_value=0.0) RecName: Full=NAD-dependent malic enzyme 59 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor;; (*SWP) sp|P37225|MAON_SOLTU (e_value=0.0) NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT4G00570.1 (e_value=0.0) | Symbols: NAD-ME2 | NAD-dependent malic enzyme 2 | chr4:242817-246522 REVERSE LENGTH=607;; (*ITAG) Solyc01g094200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77521221-77531982 transcript_region:SL2.40ch01:77521221..77531982+ go_terms:GO:0006108,GO:0008152,GO:0051287,GO:0016616,GO:0055114 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0006108,GO:0008152,GO:0051287,GO:0016616,GO:0055114 NbS00023057g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.71|1|0.66|0.42|7|317|433; (*GB) gi|147826474|emb|CAN72806.1| (e_value=0.0) hypothetical protein VITISV_035309 [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=7e-58) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT5G53390.1 (e_value=1e-76) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:21656951-21659207 REVERSE LENGTH=486;; (*ITAG) Solyc01g107900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87046163-87051415 transcript_region:SL2.40ch01:87046163..87051415- functional_description:"Acyltransferase WS/DGAT/MGAT family protein (AHRD V1 **-- A7NLM3_ROSCS); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00023057g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.5|0.83|0.2|0.16|6|0|857; (*GB) gi|224060508|ref|XP_002300226.1| (e_value=1e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SLN1|FPP7_ARATH (e_value=9e-73) Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=2 SV=2;; (*TAIR) AT2G23360.1 (e_value=7e-74) | Symbols: | Plant protein of unknown function (DUF869) | chr2:9949420-9952727 FORWARD LENGTH=898;; (*ITAG) Solyc01g107890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87042145-87046020 transcript_region:SL2.40ch01:87042145..87046020+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00024982g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|266; (*GB) gi|225454320|ref|XP_002277286.1| (e_value=4e-48) PREDICTED: uncharacterized protein LOC100258567 [Vitis vinifera];; (*TAIR) AT2G46150.1 (e_value=2e-40) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00024982g0006.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.2|1|0.5|0.2|5|0|568; (*GB) gi|225426116|ref|XP_002272534.1| (e_value=4e-176) PREDICTED: endoglucanase/exoglucanase B [Vitis vinifera];; (*TAIR) AT1G13130.1 (e_value=7e-135) | Symbols: | Cellulase (glycosyl hydrolase family 5) protein | chr1:4474726-4477820 FORWARD LENGTH=552;; (*ITAG) Solyc08g081720.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61867512-61869759 transcript_region:SL2.40ch08:61867512..61869759- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 5 (AHRD V1 **-- C7Q2F2_CATAD); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00056569g0004.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.4|1|0.25|0.2|5|433|566; (*GB) gi|359495836|ref|XP_002273962.2| (e_value=0.0) PREDICTED: galacturonosyltransferase 8-like [Vitis vinifera];; (*SWP) sp|Q9LSG3|GAUT8_ARATH (e_value=0.0) Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1;; (*TAIR) AT3G25140.1 (e_value=0.0) | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559;; (*ITAG) Solyc06g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45059759-45063492 transcript_region:SL2.40ch06:45059759..45063492- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00007398g0009.1 protein AED:0.15 eAED:0.15 QI:354|0.66|0.5|1|0|0.25|4|632|130; (*GB) gi|359484359|ref|XP_002280934.2| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera];; (*ITAG) Solyc11g067030.1.1 (e_value=3e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49880010-49882781 transcript_region:SL2.40ch11:49880010..49882781- functional_description:"RASPBERRY3 (AHRD V1 **-- Q8RY55_ARATH)"; NbS00007398g0011.1 protein AED:0.27 eAED:0.27 QI:174|0.91|0.92|1|1|1|13|441|418; (*GB) gi|225453264|ref|XP_002266492.1| (e_value=0.0) PREDICTED: histone deacetylase 9 [Vitis vinifera];; (*SWP) sp|Q8H0W2|HDA9_ARATH (e_value=0.0) Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1;; (*TAIR) AT3G44680.1 (e_value=0.0) | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426;; (*ITAG) Solyc11g067020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49871976-49879313 transcript_region:SL2.40ch11:49871976..49879313+ go_terms:GO:0005634,GO:0016575 functional_description:"Histone deacetylase (AHRD V1 ***- B9GGG8_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0005634,GO:0016575 NbS00059126g0005.1 protein AED:0.13 eAED:0.13 QI:236|1|1|1|0.5|0.66|3|356|244; (*GB) gi|388517213|gb|AFK46668.1| (e_value=5e-80) unknown [Medicago truncatula];; (*SWP) sp|Q5QMM3|WOX8_ORYSJ (e_value=6e-76) WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1;; (*TAIR) AT4G35550.1 (e_value=4e-73) | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268;; (*ITAG) Solyc02g082670.2.1 (e_value=1e-122) genomic_reference:SL2.40ch02 gene_region:40892965-40895886 transcript_region:SL2.40ch02:40892965..40895886- go_terms:GO:0003677 functional_description:"WUSCHEL-related homeobox 14 (AHRD V1 ***- B6T910_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677 NbS00005993g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|173; (*GB) gi|78499709|gb|ABB45861.1| (e_value=6e-19) DRE-binding protein 3b [Gossypium hirsutum];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=4e-17) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=3e-18) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc06g035700.1.1 (e_value=2e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:21428094-21428630 transcript_region:SL2.40ch06:21428094..21428630- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00033183g0005.1 protein AED:0.05 eAED:0.06 QI:0|1|0|1|1|1|2|0|366; (*GB) gi|359487259|ref|XP_003633549.1| (e_value=7e-173) PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vitis vinifera];; (*SWP) sp|Q00874|DR100_ARATH (e_value=7e-148) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT3G20820.1 (e_value=1e-154) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:7280930-7282027 FORWARD LENGTH=365;; (*ITAG) Solyc11g056680.1.1 (e_value=2e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45139882-45140976 transcript_region:SL2.40ch11:45139882..45140976+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00051513g0001.1 protein AED:0.13 eAED:0.15 QI:77|0|0.5|1|0|0.5|2|0|253; (*GB) gi|225454680|ref|XP_002269835.1| (e_value=1e-151) PREDICTED: uncharacterized protein LOC100264930 isoform 1 [Vitis vinifera];; (*TAIR) AT1G64980.1 (e_value=2e-150) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:24137840-24138619 REVERSE LENGTH=259;; (*ITAG) Solyc06g066800.1.1 (e_value=5e-170) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38377440-38378177 transcript_region:SL2.40ch06:38377440..38378177+ functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- B8HXH4_CYAP4)"; NbS00051513g0006.1 protein AED:0.16 eAED:0.16 QI:226|0.85|0.62|1|0.71|0.5|8|0|503; (*GB) gi|225442743|ref|XP_002284961.1| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit [Vitis vinifera];; (*SWP) sp|Q9SEX2|KTNA1_ARATH (e_value=0.0) Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1;; (*TAIR) AT1G80350.1 (e_value=0.0) | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523;; (*ITAG) Solyc06g066810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38379045-38385550 transcript_region:SL2.40ch06:38379045..38385550- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 **-- B6TID9_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00023620g0005.1 protein AED:0.24 eAED:0.24 QI:149|1|1|1|1|1|3|251|90; (*GB) gi|4530585|gb|AAD22104.1| (e_value=7e-48) B12D protein [Ipomoea batatas];; (*TAIR) AT3G48140.1 (e_value=4e-38) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc03g113730.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:57844615-57845617 transcript_region:SL2.40ch03:57844615..57845617+ functional_description:"B12D protein (AHRD V1 ***- Q9XHD5_IPOBA); contains Interpro domain(s) IPR010530 B12D "; NbS00031832g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.62|0.66|0.88|0.87|0.77|9|438|409; (*GB) gi|224132244|ref|XP_002321291.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT5G44010.1 (e_value=5e-13) | Symbols: | unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:17707224-17709199 REVERSE LENGTH=357;; (*ITAG) Solyc09g072860.1.1 (e_value=9e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61040328-61047123 transcript_region:SL2.40ch09:61040328..61047123- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 ***- Q9FNC5_ARATH)"; NbS00021540g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|225458595|ref|XP_002282674.1| (e_value=3e-30) PREDICTED: calcium-binding protein CML37 [Vitis vinifera];; (*ITAG) Solyc12g088850.1.1 (e_value=5e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62503672-62503965 transcript_region:SL2.40ch12:62503672..62503965+ go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 **-- B4G1S0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00021540g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|255538344|ref|XP_002510237.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g088860.1.1 (e_value=2e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62507049-62507348 transcript_region:SL2.40ch12:62507049..62507348+ go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 ***- B4G1S0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00021540g0003.1 protein AED:0.23 eAED:0.23 QI:69|0.57|0.75|0.75|0.85|0.75|8|932|375; (*GB) gi|225458585|ref|XP_002284636.1| (e_value=2e-159) PREDICTED: putative dihydroflavonol-4-reductase [Vitis vinifera];; (*TAIR) AT4G33360.1 (e_value=3e-158) | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16067989-16069374 REVERSE LENGTH=344;; (*ITAG) Solyc12g088880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62523783-62527414 transcript_region:SL2.40ch12:62523783..62527414- go_terms:GO:0044237,GO:0008152 functional_description:"Epimerase/dehydratase (AHRD V1 ***- C7JBC7_ACEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00039590g0008.1 protein AED:0.01 eAED:0.01 QI:81|1|1|1|1|1|2|143|469; (*GB) gi|359479573|ref|XP_002275034.2| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 17-like [Vitis vinifera];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=5e-151) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=4e-152) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc09g065800.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59668271-59669889 transcript_region:SL2.40ch09:59668271..59669889- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00039590g0007.1 protein AED:0.22 eAED:0.22 QI:216|1|0.83|1|1|1|6|0|300; (*GB) gi|225437207|ref|XP_002281626.1| (e_value=2e-98) PREDICTED: transcription factor UNE12 [Vitis vinifera];; (*SWP) sp|O22768|UNE12_ARATH (e_value=1e-81) Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2;; (*TAIR) AT4G02590.2 (e_value=1e-82) | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:1137968-1140306 REVERSE LENGTH=310;; (*ITAG) Solyc09g065820.2.1 (e_value=5e-135) genomic_reference:SL2.40ch09 gene_region:59693000-59697548 transcript_region:SL2.40ch09:59693000..59697548+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00026824g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|147864567|emb|CAN78966.1| (e_value=5e-30) hypothetical protein VITISV_019939 [Vitis vinifera];; (*TAIR) AT3G23440.1 (e_value=3e-20) | Symbols: EDA6, MEE37 | embryo sac development arrest 6 | chr3:8404358-8404684 REVERSE LENGTH=108;; (*ITAG) Solyc09g090380.1.1 (e_value=3e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65255425-65255868 transcript_region:SL2.40ch09:65255425..65255868- functional_description:"Genomic DNA chromosome 3 P1 clone MLM24 (AHRD V1 *-*- Q9LW53_ARATH)"; NbS00026719g0001.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|1|1|3|0|94; (*ITAG) Solyc10g007520.1.1 (e_value=6e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1846321-1847484 transcript_region:SL2.40ch10:1846321..1847484+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010743g0018.1 protein AED:0.18 eAED:0.18 QI:541|1|0.90|1|0.6|0.63|11|0|287; (*GB) gi|359483143|ref|XP_003632910.1| (e_value=6e-132) PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=2e-123) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.1 (e_value=9e-124) | Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290;; (*ITAG) Solyc03g117890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60949790-60953035 transcript_region:SL2.40ch03:60949790..60953035- functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"; NbS00010743g0014.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|8|290|288; (*GB) gi|77416949|gb|ABA81870.1| (e_value=2e-155) unknown [Solanum tuberosum];; (*SWP) sp|P43333|RU2A_ARATH (e_value=2e-117) U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2;; (*TAIR) AT1G09760.1 (e_value=1e-118) | Symbols: U2A' | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249;; (*ITAG) Solyc03g117940.2.1 (e_value=4e-157) genomic_reference:SL2.40ch03 gene_region:60972959-60976823 transcript_region:SL2.40ch03:60972959..60976823+ go_terms:GO:0005515,GO:0003729 functional_description:"U2 small nuclear ribonucleoprotein A&apos (AHRD V1 ***- Q1HPT8_BOMMO)"; GO:0005515,GO:0003729 NbS00010743g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|0.66|1|1|3|0|60; (*GB) gi|255545096|ref|XP_002513609.1| (e_value=6e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G10865.1 (e_value=2e-29) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); Has 241 Blast hits to 241 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants - 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:3614789-3615308 REVERSE LENGTH=71;; (*ITAG) Solyc03g117900.2.1 (e_value=3e-34) genomic_reference:SL2.40ch03 gene_region:60955512-60958727 transcript_region:SL2.40ch03:60955512..60958727+ functional_description:"Cytochrome c oxidase assembly protein (AHRD V1 **-- A8JCU9_CHLRE); contains Interpro domain(s) IPR018793 Cytochrome c oxidase assembly protein PET191, N-terminal "; NbS00010743g0022.1 protein AED:0.39 eAED:0.39 QI:0|0.2|0|0.83|0|0.16|6|0|467; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=1e-70) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=9e-44) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=2e-26) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc03g117930.2.1 (e_value=1e-79) genomic_reference:SL2.40ch03 gene_region:60964198-60971730 transcript_region:SL2.40ch03:60964198..60971730+ go_terms:GO:0046982,GO:0042803 functional_description:"FRIGIDA (AHRD V1 ***- B0YZZ2_ARALP); contains Interpro domain(s) IPR012474 Frigida-like "; GO:0046982,GO:0042803 NbS00010743g0009.1 protein AED:0.52 eAED:0.66 QI:0|0|0|0.66|1|1|3|0|150; (*ITAG) Solyc03g117930.2.1 (e_value=6e-23) genomic_reference:SL2.40ch03 gene_region:60964198-60971730 transcript_region:SL2.40ch03:60964198..60971730+ go_terms:GO:0046982,GO:0042803 functional_description:"FRIGIDA (AHRD V1 ***- B0YZZ2_ARALP); contains Interpro domain(s) IPR012474 Frigida-like "; GO:0046982,GO:0042803 NbS00010743g0004.1 protein AED:0.55 eAED:0.71 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|295322851|gb|ADG01873.1| (e_value=2e-24) flowering time [Vitis aestivalis];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=5e-21) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=1e-21) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc12g042440.1.1 (e_value=9e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43141897-43148675 transcript_region:SL2.40ch12:43141897..43148675- functional_description:"FRIGIDA (AHRD V1 *-*- Q52S96_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00010743g0005.1 protein AED:0.92 eAED:1.00 QI:0|0|0|1|1|1|2|0|274 NbS00007113g0017.1 protein AED:0.08 eAED:0.08 QI:0|0.57|0.5|1|0.57|0.5|8|0|916; (*GB) gi|225440346|ref|XP_002270206.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=6e-52) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT2G37670.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15797384-15800536 REVERSE LENGTH=903;; (*ITAG) Solyc09g010720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4029691-4033379 transcript_region:SL2.40ch09:4029691..4033379- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00007113g0012.1 protein AED:0.03 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|297740383|emb|CBI30565.3| (e_value=4e-20) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g010710.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:4026081-4029219 transcript_region:SL2.40ch09:4026081..4029219- functional_description:"Unknown Protein (AHRD V1)"; NbS00007113g0018.1 protein AED:0.35 eAED:0.39 QI:0|0|0.16|0.5|0.8|0.83|6|0|278; (*GB) gi|147777112|emb|CAN65558.1| (e_value=5e-81) hypothetical protein VITISV_034982 [Vitis vinifera];; (*TAIR) AT3G09430.1 (e_value=5e-45) | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2901280-2902893 FORWARD LENGTH=301;; (*ITAG) Solyc09g010710.2.1 (e_value=1e-47) genomic_reference:SL2.40ch09 gene_region:4026081-4029219 transcript_region:SL2.40ch09:4026081..4029219- functional_description:"Unknown Protein (AHRD V1)"; NbS00007113g0019.1 protein AED:0.09 eAED:0.13 QI:0|0.62|0.66|1|0.62|0.66|9|0|440; (*GB) gi|365222870|gb|AEW69787.1| (e_value=0.0) Hop-interacting protein THI015 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=4e-178) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=3e-179) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc09g010690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4016066-4020196 transcript_region:SL2.40ch09:4016066..4020196+ go_terms:GO:0005200 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005200 NbS00048219g0003.1 protein AED:0.27 eAED:0.28 QI:0|1|0|1|1|1|2|0|341; (*GB) gi|225466968|ref|XP_002267887.1| (e_value=3e-118) PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Vitis vinifera];; (*SWP) sp|B3A0R0|PPI_LOTGI (e_value=7e-18) Putative peptidyl-prolyl cis-trans isomerase OS=Lottia gigantea PE=1 SV=1;; (*TAIR) AT5G35100.1 (e_value=5e-92) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr5:13360459-13361377 REVERSE LENGTH=281;; (*ITAG) Solyc07g007110.2.1 (e_value=9e-146) genomic_reference:SL2.40ch07 gene_region:1857663-1861091 transcript_region:SL2.40ch07:1857663..1861091+ go_terms:GO:0051082 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D7MHP4_ARALY); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082 NbS00020186g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.85|1|0.83|1|7|283|174; (*GB) gi|147765303|emb|CAN60194.1| (e_value=5e-67) hypothetical protein VITISV_038571 [Vitis vinifera];; (*SWP) sp|Q01105|SET_HUMAN (e_value=1e-27) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G18800.1 (e_value=6e-64) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc03g116170.2.1 (e_value=3e-77) genomic_reference:SL2.40ch03 gene_region:59709189-59714932 transcript_region:SL2.40ch03:59709189..59714932+ go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00025775g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.71|0.37|1|0.71|0.62|8|0|505; (*GB) gi|385867552|pdb|3STT|A (e_value=3e-105) Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo Form;; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=2e-48) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23610.1 (e_value=1e-48) | Symbols: ATMES3, MES3 | methyl esterase 3 | chr2:10044410-10046403 REVERSE LENGTH=263;; (*ITAG) Solyc01g108740.2.1 (e_value=3e-114) genomic_reference:SL2.40ch01 gene_region:87713290-87714523 transcript_region:SL2.40ch01:87713290..87714523- go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LG04_ARALY)"; GO:0080031,GO:0080030 NbS00025775g0009.1 protein AED:0.33 eAED:0.37 QI:0|0|0|1|0|0|2|0|144; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-48) hypothetical protein [Nicotiana tabacum]; NbS00025775g0008.1 protein AED:0.37 eAED:0.69 QI:0|0|0|1|0|0|2|0|109 NbS00005317g0106.1 protein AED:0.04 eAED:0.04 QI:87|1|1|1|0.5|0.33|3|21|241 NbS00005317g0101.1 protein AED:0.21 eAED:0.21 QI:16|1|1|1|1|1|4|419|377 NbS00015013g0005.1 protein AED:0.32 eAED:0.33 QI:380|0.5|0.66|1|0|0.33|3|0|217; (*GB) gi|225438813|ref|XP_002283333.1| (e_value=2e-78) PREDICTED: protein RER1A [Vitis vinifera];; (*SWP) sp|O48670|RER1A_ARATH (e_value=8e-71) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=6e-72) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc02g093010.2.1 (e_value=5e-92) genomic_reference:SL2.40ch02 gene_region:48544256-48547568 transcript_region:SL2.40ch02:48544256..48547568+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00015013g0006.1 protein AED:0.14 eAED:0.15 QI:116|1|0.5|1|1|1|2|0|538; (*GB) gi|225438811|ref|XP_002278393.1| (e_value=0.0) PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=4e-60) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50120.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc02g093020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48547605-48549746 transcript_region:SL2.40ch02:48547605..48549746- functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00060216g0002.1 protein AED:0.22 eAED:0.42 QI:0|0.33|0.25|1|1|1|4|324|479; (*GB) gi|356556739|ref|XP_003546680.1| (e_value=9e-113) PREDICTED: SUN domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q8BJS4|SUN2_MOUSE (e_value=7e-19) SUN domain-containing protein 2 OS=Mus musculus GN=Sun2 PE=1 SV=3;; (*TAIR) AT5G04990.1 (e_value=2e-107) | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protein 1 | chr5:1471698-1473770 REVERSE LENGTH=471;; (*ITAG) Solyc01g096780.2.1 (e_value=2e-179) genomic_reference:SL2.40ch01 gene_region:79547731-79553387 transcript_region:SL2.40ch01:79547731..79553387+ go_terms:GO:0005515 functional_description:"Sperm-associated SUN domain protein (AHRD V1 *--- A5HL83_DROME); contains Interpro domain(s) IPR012919 Sad1/UNC-like, C-terminal "; GO:0005515 NbS00009324g0004.1 protein AED:0.37 eAED:0.38 QI:195|0.83|0.85|1|0.66|0.57|7|0|267; (*GB) gi|62867580|emb|CAI84655.1| (e_value=5e-96) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT1G21320.2 (e_value=8e-55) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc04g071050.2.1 (e_value=2e-92) genomic_reference:SL2.40ch04 gene_region:55538641-55541050 transcript_region:SL2.40ch04:55538641..55541050+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 ***- Q8H0P8_MEDTR); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbC24162159g0001.1 protein AED:0.16 eAED:0.18 QI:0|-1|0|1|-1|0|1|0|81; (*ITAG) Solyc04g047870.1.1 (e_value=6e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:37353396-37353968 transcript_region:SL2.40ch04:37353396..37353968+ go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 ***- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00025121g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|76161006|gb|ABA40466.1| (e_value=2e-49) unknown [Solanum tuberosum];; (*TAIR) AT1G05760.1 (e_value=4e-20) | Symbols: RTM1 | Mannose-binding lectin superfamily protein | chr1:1723797-1724440 REVERSE LENGTH=174;; (*ITAG) Solyc09g083040.1.1 (e_value=3e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64106866-64107372 transcript_region:SL2.40ch09:64106866..64107372- go_terms:GO:0005529 functional_description:"Myrosinase-binding protein 2 (AHRD V1 **-* D7KIN1_ARALY); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00027521g0006.1 protein AED:0.26 eAED:0.28 QI:0|0.85|0.77|1|0.85|0.81|22|0|1239; (*GB) gi|359480896|ref|XP_003632541.1| (e_value=0.0) PREDICTED: probable cation-transporting ATPase-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LT02|ATY1_ARATH (e_value=0.0) Probable cation-transporting ATPase OS=Arabidopsis thaliana GN=At5g23630 PE=2 SV=1;; (*TAIR) AT5G23630.1 (e_value=0.0) | Symbols: PDR2, MIA | phosphate deficiency response 2 | chr5:7960756-7967644 REVERSE LENGTH=1179;; (*ITAG) Solyc01g096830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79582467-79598760 transcript_region:SL2.40ch01:79582467..79598760- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 *-** ATC1_YEAST); contains Interpro domain(s) IPR006544 ATPase, P-type, unknown pump specificity (type V) "; GO:0005388 NbS00016789g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|169674672|gb|ACA64702.1| (e_value=1e-180) subtilase [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-54) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=5e-59) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc01g087850.2.1 (e_value=8e-172) genomic_reference:SL2.40ch01 gene_region:74480717-74483824 transcript_region:SL2.40ch01:74480717..74483824+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00016789g0006.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|80; (*GB) gi|169674672|gb|ACA64702.1| (e_value=2e-35) subtilase [Nicotiana tabacum];; (*ITAG) Solyc01g087850.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:74480717-74483824 transcript_region:SL2.40ch01:74480717..74483824+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0006508,GO:0043086 NbS00000632g0002.1 protein AED:0.17 eAED:0.17 QI:22|1|1|1|0.4|0.33|6|829|89; (*GB) gi|58618121|gb|AAW80627.1| (e_value=2e-47) autophagy protein beclin1 [Nicotiana benthamiana];; (*SWP) sp|Q9M367|BECN1_ARATH (e_value=6e-27) Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2;; (*TAIR) AT3G61710.2 (e_value=9e-29) | Symbols: BECLIN1, AtBECLIN1 | AUTOPHAGY 6 | chr3:22840211-22842253 REVERSE LENGTH=386;; (*ITAG) Solyc05g050390.2.1 (e_value=1e-39) genomic_reference:SL2.40ch05 gene_region:59651299-59658483 transcript_region:SL2.40ch05:59651299..59658483- go_terms:GO:0005515 functional_description:"Beclin 1 protein (AHRD V1 ***- Q4A184_SOLTU); contains Interpro domain(s) IPR007243 Autophagy-related protein 6 "; GO:0005515 NbS00000632g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.5|1|1|1|4|0|228; (*GB) gi|70779014|gb|AAZ08051.1| (e_value=3e-72) wax synthase [Petunia x hybrida];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=5e-26) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49200.1 (e_value=1e-44) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18235445-18237646 REVERSE LENGTH=507;; (*ITAG) Solyc10g009430.2.1 (e_value=7e-71) genomic_reference:SL2.40ch10 gene_region:3495360-3501746 transcript_region:SL2.40ch10:3495360..3501746+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- Q124V7_POLSJ); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00035424g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|151; (*ITAG) Solyc09g010730.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4037751-4038446 transcript_region:SL2.40ch09:4037751..4038446- functional_description:"Unknown Protein (AHRD V1)"; NbS00049856g0005.1 protein AED:0.10 eAED:0.11 QI:0|0.8|0.33|1|0.8|0.83|6|0|469; (*GB) gi|255586469|ref|XP_002533878.1| (e_value=0.0) protein disulfide isomerase, putative [Ricinus communis];; (*SWP) sp|Q94F09|PDI52_ARATH (e_value=2e-161) Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=2 SV=1;; (*TAIR) AT1G35620.1 (e_value=1e-162) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440;; (*ITAG) Solyc06g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37121896-37126933 transcript_region:SL2.40ch06:37121896..37126933+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase (AHRD V1 **-* Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756 NbS00045272g0008.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|107; (*GB) gi|58200407|gb|AAW66459.1| (e_value=3e-25) WRKY transcription factor-b [Capsicum annuum];; (*SWP) sp|Q9FYA2|WRK75_ARATH (e_value=2e-18) Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1;; (*TAIR) AT5G13080.1 (e_value=1e-19) | Symbols: WRKY75, ATWRKY75 | WRKY DNA-binding protein 75 | chr5:4149928-4151019 REVERSE LENGTH=145;; (*ITAG) Solyc05g015850.2.1 (e_value=1e-25) genomic_reference:SL2.40ch05 gene_region:12420457-12423158 transcript_region:SL2.40ch05:12420457..12423158- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-b (AHRD V1 **** Q5DJU0_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00045272g0006.1 protein AED:0.34 eAED:0.35 QI:0|0.33|0.25|1|1|1|4|0|161; (*ITAG) Solyc02g005360.1.1 (e_value=5e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00045272g0002.1 protein AED:0.49 eAED:0.57 QI:0|-1|0|1|-1|1|1|0|67 NbS00018045g0001.1 protein AED:0.33 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|100; (*GB) gi|19380|emb|CAA43168.1| (e_value=2e-35) TDR3 [Solanum lycopersicum];; (*SWP) sp|O64645|SOC1_ARATH (e_value=3e-34) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=2e-35) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc10g017640.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5505761-5505946 transcript_region:SL2.40ch10:5505761..5505946- go_terms:GO:0005634 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00020554g0001.1 protein AED:0.02 eAED:0.02 QI:245|1|1|1|0.33|0|4|341|168; (*GB) gi|224089182|ref|XP_002308653.1| (e_value=4e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15680.1 (e_value=9e-50) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr3:5315437-5316048 FORWARD LENGTH=164;; (*ITAG) Solyc12g006600.1.1 (e_value=6e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1083786-1084309 transcript_region:SL2.40ch12:1083786..1084309+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00020554g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|304; (*GB) gi|255548986|ref|XP_002515549.1| (e_value=3e-117) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZV31|PUB12_ARATH (e_value=4e-12) U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1;; (*TAIR) AT2G28830.1 (e_value=5e-13) | Symbols: PUB12, AtPUB12 | PLANT U-BOX 12 | chr2:12367001-12370608 REVERSE LENGTH=962;; (*ITAG) Solyc08g067170.1.1 (e_value=2e-162) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:53343803-53344735 transcript_region:SL2.40ch08:53343803..53344735+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 11 (AHRD V1 **-- PUB11_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00032140g0001.1 protein AED:0.11 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|159; (*ITAG) Solyc10g086450.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64592299-64592796 transcript_region:SL2.40ch10:64592299..64592796+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002763g0001.1 protein AED:0.06 eAED:0.07 QI:0|0|0.33|1|1|1|3|0|364; (*GB) gi|225453933|ref|XP_002279636.1| (e_value=4e-88) PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=4e-42) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=5e-66) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc01g091470.2.1 (e_value=9e-102) genomic_reference:SL2.40ch01 gene_region:76860856-76862402 transcript_region:SL2.40ch01:76860856..76862402+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00002763g0022.1 protein AED:0.10 eAED:0.10 QI:22|0.42|0.33|0.93|0.92|0.86|15|384|1370; (*GB) gi|356505731|ref|XP_003521643.1| (e_value=0.0) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max];; (*SWP) sp|P11075|SEC7_YEAST (e_value=9e-109) Protein transport protein SEC7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC7 PE=1 SV=2;; (*TAIR) AT3G60860.1 (e_value=0.0) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793;; (*ITAG) Solyc01g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00002763g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|225453929|ref|XP_002279679.1| (e_value=7e-61) PREDICTED: probable calcium-binding protein CML10 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8RZB5|CML10_ORYSJ (e_value=4e-38) Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=1e-35) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc04g008000.2.1 (e_value=3e-35) genomic_reference:SL2.40ch04 gene_region:1652161-1653061 transcript_region:SL2.40ch04:1652161..1653061- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D9J0A7_9ROSI); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00002763g0023.1 protein AED:0.19 eAED:0.30 QI:0|0.4|0|0.83|0.4|0.33|6|0|704; (*GB) gi|225453927|ref|XP_002279696.1| (e_value=0.0) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Vitis vinifera];; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=3e-74) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT3G60860.1 (e_value=0.0) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793;; (*ITAG) Solyc01g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00002763g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|151; (*GB) gi|356528716|ref|XP_003532945.1| (e_value=9e-22) PREDICTED: ribosomal L1 domain-containing protein 1-like [Glycine max];; (*TAIR) AT3G58660.1 (e_value=5e-18) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00002763g0006.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|1|1|3|0|241; (*GB) gi|296086315|emb|CBI31756.3| (e_value=4e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G58660.1 (e_value=2e-25) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00002763g0005.1 protein AED:0.54 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|139 NbS00002763g0024.1 protein AED:0.49 eAED:0.50 QI:0|0|0|1|0|0|2|0|216; (*GB) gi|225453927|ref|XP_002279696.1| (e_value=2e-78) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Vitis vinifera];; (*TAIR) AT3G60860.1 (e_value=1e-67) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr3:22484804-22491510 FORWARD LENGTH=1793;; (*ITAG) Solyc01g091460.2.1 (e_value=1e-103) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00012401g0007.1 protein AED:0.03 eAED:0.03 QI:231|1|1|1|1|1|3|266|189; (*GB) gi|225435694|ref|XP_002283442.1| (e_value=2e-58) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera];; (*TAIR) AT2G44300.1 (e_value=1e-47) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc01g005990.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:653649-655542 transcript_region:SL2.40ch01:653649..655542- functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9REN2_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00036798g0005.1 protein AED:0.07 eAED:0.07 QI:513|1|1|1|1|1|2|389|302; (*GB) gi|317106772|dbj|BAJ53264.1| (e_value=6e-55) JMS10C05.9 [Jatropha curcas];; (*TAIR) AT2G41870.1 (e_value=6e-52) | Symbols: | Remorin family protein | chr2:17471119-17472519 REVERSE LENGTH=274;; (*ITAG) Solyc04g015520.2.1 (e_value=2e-71) genomic_reference:SL2.40ch04 gene_region:5728590-5731134 transcript_region:SL2.40ch04:5728590..5731134+ go_terms:GO:0003677 functional_description:"DNA binding protein (AHRD V1 **** B6TND2_MAIZE); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00036798g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|78; (*ITAG) Solyc08g007350.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00058517g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.75|1|0.66|0.75|4|227|222; (*GB) gi|374256021|gb|AEZ00872.1| (e_value=2e-93) putative hypersensitive-induced response protein, partial [Elaeis guineensis];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=1e-90) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=1e-91) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc02g067470.2.1 (e_value=1e-105) genomic_reference:SL2.40ch02 gene_region:32239857-32243351 transcript_region:SL2.40ch02:32239857..32243351- go_terms:GO:0005515 functional_description:"SPFH domain / Band 7 family protein (AHRD V1 **-- Q6L4B0_SOLDE); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00053408g0007.1 protein AED:0.01 eAED:0.01 QI:537|1|1|1|0.25|0.4|5|180|327; (*GB) gi|224103139|ref|XP_002312940.1| (e_value=8e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R448|DCAF8_PONAB (e_value=2e-39) DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1;; (*TAIR) AT4G35140.1 (e_value=5e-93) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16723873-16726477 REVERSE LENGTH=496;; (*ITAG) Solyc01g111860.2.1 (e_value=7e-122) genomic_reference:SL2.40ch01 gene_region:89775251-89782064 transcript_region:SL2.40ch01:89775251..89782064- go_terms:GO:0042826,GO:0042393 functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042826,GO:0042393 NbS00053408g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|2246452|gb|AAB62807.1| (e_value=1e-108) S-adenosyl-methionine-sterol-C-methyltransferase homolog, partial [Nicotiana tabacum];; (*SWP) sp|Q39227|SMT2_ARATH (e_value=2e-97) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=1e-98) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc01g111830.2.1 (e_value=2e-102) genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00013356g0004.1 protein AED:0.00 eAED:0.00 QI:224|1|1|1|1|1|3|505|91; (*GB) gi|224124186|ref|XP_002330126.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g115950.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:59579725-59580473 transcript_region:SL2.40ch03:59579725..59580473+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013356g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|0.33|0.5|4|0|259; (*GB) gi|356516806|ref|XP_003527084.1| (e_value=2e-133) PREDICTED: GDSL esterase/lipase At1g74460-like [Glycine max];; (*SWP) sp|Q9CA68|GDL31_ARATH (e_value=2e-121) GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1;; (*TAIR) AT1G74460.1 (e_value=2e-122) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:27988150-27989765 REVERSE LENGTH=366;; (*ITAG) Solyc03g115960.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:59581474-59583094 transcript_region:SL2.40ch03:59581474..59583094- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g74460 (AHRD V1 ***- GDL31_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00033598g0008.1 protein AED:0.22 eAED:0.22 QI:183|1|1|1|1|1|2|508|418; (*GB) gi|225445053|ref|XP_002283391.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245695 [Vitis vinifera];; (*TAIR) AT4G29310.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr4:14437892-14439609 REVERSE LENGTH=424;; (*ITAG) Solyc12g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1996212-1999348 transcript_region:SL2.40ch12:1996212..1999348+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00033598g0004.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|103; (*ITAG) Solyc08g066530.2.1 (e_value=6e-17) genomic_reference:SL2.40ch08 gene_region:52464757-52475814 transcript_region:SL2.40ch08:52464757..52475814- go_terms:GO:0003993 functional_description:"Acid phosphatase-like protein (AHRD V1 **-- Q9M0F5_ARATH); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00033598g0011.1 protein AED:0.31 eAED:0.33 QI:20|0|0|1|0|0|5|0|238; (*GB) gi|54261828|gb|AAV31178.1| (e_value=3e-36) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=8e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00033598g0010.1 protein AED:0.43 eAED:0.54 QI:0|0|0|1|0|0|3|0|83 NbS00036951g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|0.5|2|0|277; (*GB) gi|71370257|gb|AAZ30376.1| (e_value=8e-151) PHB1 [Nicotiana benthamiana];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=3e-85) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=2e-136) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc05g051510.2.1 (e_value=3e-152) genomic_reference:SL2.40ch05 gene_region:61017078-61019992 transcript_region:SL2.40ch05:61017078..61019992- go_terms:GO:0005515 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0005515 NbS00044656g0008.1 protein AED:0.02 eAED:0.02 QI:4|1|1|1|1|1|4|225|382; (*GB) gi|1064931|emb|CAA63541.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q3ECW2|CCA34_ARATH (e_value=8e-152) Cyclin-A3-4 OS=Arabidopsis thaliana GN=CYCA3-4 PE=1 SV=1;; (*TAIR) AT1G47230.1 (e_value=9e-155) | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306752-17308587 FORWARD LENGTH=369;; (*ITAG) Solyc04g078310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60660616-60662496 transcript_region:SL2.40ch04:60660616..60662496+ go_terms:GO:0005634 functional_description:"Cyclin A-like protein (AHRD V1 ***- Q40492_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00044656g0009.1 protein AED:0.20 eAED:0.20 QI:135|0.85|0.8|0.93|0.85|0.93|15|0|634; (*GB) gi|359492567|ref|XP_003634436.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: F-box-like/WD repeat-containing protein TBL1XR1-like [Vitis vinifera];; (*SWP) sp|Q9QXE7|TBL1X_MOUSE (e_value=8e-144) F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2;; (*TAIR) AT5G67320.1 (e_value=0.0) | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613;; (*ITAG) Solyc04g078320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60664444-60675242 transcript_region:SL2.40ch04:60664444..60675242- go_terms:GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00043481g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0.5|0.33|3|1071|114; (*GB) gi|388517743|gb|AFK46933.1| (e_value=1e-26) unknown [Lotus japonicus];; (*TAIR) AT4G21105.1 (e_value=3e-24) | Symbols: | cytochrome-c oxidases;electron carriers | chr4:11266273-11266724 FORWARD LENGTH=68; NbS00043481g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|858; (*GB) gi|225436305|ref|XP_002269994.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase KIPK-like [Vitis vinifera];; (*SWP) sp|Q9LFA2|KIPK_ARATH (e_value=0.0) Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1;; (*TAIR) AT3G52890.2 (e_value=0.0) | Symbols: KIPK | KCBP-interacting protein kinase | chr3:19609150-19612032 FORWARD LENGTH=934;; (*ITAG) Solyc06g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42473902-42477685 transcript_region:SL2.40ch06:42473902..42477685+ go_terms:GO:0004672,GO:0005515 functional_description:"Protein kinase (AHRD V1 *-** A7VL53_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00046426g0004.1 protein AED:0.36 eAED:0.36 QI:145|1|0.6|1|1|1|5|0|172; (*GB) gi|118489716|gb|ABK96659.1| (e_value=4e-103) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q9T0K7|HIBC6_ARATH (e_value=1e-100) 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2;; (*TAIR) AT4G13360.1 (e_value=7e-102) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:7775133-7777701 FORWARD LENGTH=421;; (*ITAG) Solyc07g022880.2.1 (e_value=5e-91) genomic_reference:SL2.40ch07 gene_region:23195258-23198091 transcript_region:SL2.40ch07:23195258..23198091+ go_terms:GO:0004300,GO:0051750 functional_description:"Enoyl-CoA hydratase/isomerase family protein (AHRD V1 **** D7L526_ARALY); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0004300,GO:0051750 NbS00018320g0010.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0.33|0.66|0|0|3|452|83; (*ITAG) Solyc12g013910.1.1 (e_value=1e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4746067-4750635 transcript_region:SL2.40ch12:4746067..4750635- functional_description:"PRA1 family protein H (AHRD V1 ***- PRA1H_ARATH); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00018320g0009.1 protein AED:0.37 eAED:0.47 QI:36|1|0.66|1|1|0.66|3|0|68; (*GB) gi|359493828|ref|XP_002282618.2| (e_value=2e-38) PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera];; (*SWP) sp|Q9FN32|YIPL7_ARATH (e_value=5e-34) Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1;; (*TAIR) AT5G53940.1 (e_value=4e-35) | Symbols: | Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129;; (*ITAG) Solyc12g013920.1.1 (e_value=1e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4753645-4757418 transcript_region:SL2.40ch12:4753645..4757418- functional_description:"Yippee family protein (AHRD V1 ***- D7MTM3_ARALY); contains Interpro domain(s) IPR004910 Yippee-like protein "; NbS00018320g0011.1 protein AED:0.52 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|174; (*GB) gi|255584403|ref|XP_002532934.1| (e_value=1e-29) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LFP1|PRA1H_ARATH (e_value=2e-24) PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1;; (*TAIR) AT4G27540.1 (e_value=2e-25) | Symbols: PRA1.H | prenylated RAB acceptor 1.H | chr4:13753449-13754660 REVERSE LENGTH=241;; (*ITAG) Solyc12g013910.1.1 (e_value=5e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4746067-4750635 transcript_region:SL2.40ch12:4746067..4750635- functional_description:"PRA1 family protein H (AHRD V1 ***- PRA1H_ARATH); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00031635g0004.1 protein AED:0.36 eAED:0.36 QI:27|0.66|0.75|1|1|1|4|562|250; (*GB) gi|225452312|ref|XP_002272486.1| (e_value=9e-164) PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-44) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50180.1 (e_value=1e-150) | Symbols: | Protein kinase superfamily protein | chr5:20431116-20432883 FORWARD LENGTH=346;; (*ITAG) Solyc02g093410.2.1 (e_value=3e-176) genomic_reference:SL2.40ch02 gene_region:48864525-48868381 transcript_region:SL2.40ch02:48864525..48868381+ go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q7XJ65_CUCSA); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004708 NbS00028667g0007.1 protein AED:0.19 eAED:0.19 QI:186|1|0.93|1|1|1|15|0|744; (*GB) gi|149941651|dbj|BAF64847.1| (e_value=0.0) Cdc27B [Nicotiana benthamiana];; (*SWP) sp|Q8LGU6|CD27B_ARATH (e_value=0.0) Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1;; (*TAIR) AT2G20000.1 (e_value=0.0) | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744;; (*ITAG) Solyc03g061600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00013196g0008.1 protein AED:0.19 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|559; (*GB) gi|225456301|ref|XP_002279969.1| (e_value=0.0) PREDICTED: SWI/SNF complex component SNF12 homolog [Vitis vinifera];; (*SWP) sp|Q9FMT4|SNF12_ARATH (e_value=0.0) SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1;; (*TAIR) AT5G14170.1 (e_value=0.0) | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein | chr5:4568696-4570444 REVERSE LENGTH=534;; (*ITAG) Solyc03g111250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55916730-55920194 transcript_region:SL2.40ch03:55916730..55920194+ go_terms:GO:0003713 functional_description:"SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily d member 1 (AHRD V1 ***- Q6GL18_XENTR); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0003713 NbS00013196g0009.1 protein AED:0.26 eAED:0.28 QI:279|0.82|0.77|1|1|1|18|0|832; (*GB) gi|297734394|emb|CBI15641.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54122|RNJ_CORGL (e_value=8e-82) Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=Cgl1970 PE=3 SV=2;; (*TAIR) AT5G63420.1 (e_value=0.0) | Symbols: emb2746 | RNA-metabolising metallo-beta-lactamase family protein | chr5:25400515-25405807 FORWARD LENGTH=911;; (*ITAG) Solyc03g111260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55921587-55934149 transcript_region:SL2.40ch03:55921587..55934149+ go_terms:GO:0003824 functional_description:"Metallo-beta-lactamase family protein (AHRD V1 *-*- A3ERL5_9BACT); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00012629g0001.1 protein AED:0.00 eAED:0.00 QI:37|-1|0|1|-1|1|1|0|502; (*GB) gi|58430496|dbj|BAD89042.1| (e_value=0.0) UDP-glucose glucosyltransferase [Solanum aculeatissimum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=1e-108) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT2G15490.3 (e_value=2e-109) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc08g077080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58177444-58178889 transcript_region:SL2.40ch08:58177444..58178889- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase HvUGT14077 (AHRD V1 **** D3WYW3_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00046374g0004.1 protein AED:0.13 eAED:0.25 QI:0|0.66|0.56|1|0.6|0.56|16|0|628; (*GB) gi|225458866|ref|XP_002283387.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 7-like [Vitis vinifera];; (*SWP) sp|O04472|NAT10_ARATH (e_value=0.0) Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2;; (*TAIR) AT1G65550.1 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr1:24367694-24370800 REVERSE LENGTH=541;; (*ITAG) Solyc05g006020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:754456-759784 transcript_region:SL2.40ch05:754456..759784+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00000766g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc01g066290.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:66311659-66312264 transcript_region:SL2.40ch01:66311659..66312264- functional_description:"Unknown Protein (AHRD V1)"; NbS00015889g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|660; (*GB) gi|255571544|ref|XP_002526718.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|P93755|C3H30_ARATH (e_value=2e-144) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=2e-145) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g079120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60053436-60055547 transcript_region:SL2.40ch10:60053436..60055547- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 **-- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00015889g0001.1 protein AED:0.50 eAED:0.69 QI:0|0|0|0.5|1|1|6|0|347; (*GB) gi|77176829|gb|ABA64520.1| (e_value=7e-26) sucrose-phosphate synthase isoform C [Nicotiana tabacum];; (*ITAG) Solyc11g045110.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36639062-36646330 transcript_region:SL2.40ch11:36639062..36646330- go_terms:GO:0005923,GO:0005985,GO:0009058 functional_description:"Sucrose-phosphate synthase 1 (AHRD V1 ***- Q5EEP9_VITVI); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0005923,GO:0005985,GO:0009058 NbS00002478g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|342220082|gb|AEL17348.1| (e_value=8e-29) TCP1 [Petunia x hybrida];; (*SWP) sp|A0AQW4|TCP12_ARATH (e_value=1e-17) Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1;; (*TAIR) AT1G68800.1 (e_value=1e-18) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc05g009900.1.1 (e_value=8e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4125179-4126240 transcript_region:SL2.40ch05:4125179..4126240+ functional_description:"CYCLOIDEA-like group 1B protein (Fragment) (AHRD V1 *-*- Q6VM71_LUPDI); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00005510g0007.1 protein AED:0.25 eAED:0.25 QI:364|0.9|0.90|1|0.7|0.54|11|1022|295; (*GB) gi|255577895|ref|XP_002529820.1| (e_value=1e-163) ankyrin-kinase, putative [Ricinus communis];; (*TAIR) AT2G43850.1 (e_value=9e-157) | Symbols: | Integrin-linked protein kinase family | chr2:18159517-18161984 REVERSE LENGTH=479;; (*ITAG) Solyc08g014450.2.1 (e_value=3e-179) genomic_reference:SL2.40ch08 gene_region:4408477-4415047 transcript_region:SL2.40ch08:4408477..4415047- go_terms:GO:0005515 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0005515 NbS00041363g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|48209896|gb|AAT40490.1| (e_value=2e-90) EF hand family protein [Solanum demissum];; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=4e-87) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=3e-88) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc11g072270.1.1 (e_value=2e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52555099-52557686 transcript_region:SL2.40ch11:52555099..52557686- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00041363g0011.1 protein AED:0.18 eAED:0.18 QI:209|1|0.6|1|0.25|0.4|5|634|385; (*GB) gi|113205142|gb|AAT40504.2| (e_value=6e-96) Polyprotein, putative [Solanum demissum];; (*TAIR) AT1G77270.1 (e_value=2e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 428 Blast hits to 388 proteins in 92 species: Archae - 0; Bacteria - 31; Metazoa - 189; Fungi - 10; Plants - 97; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). | chr1:29028342-29031068 FORWARD LENGTH=682;; (*ITAG) Solyc11g072250.1.1 (e_value=4e-133) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52542809-52547585 transcript_region:SL2.40ch11:52542809..52547585- functional_description:"Unknown Protein (AHRD V1)"; NbS00041363g0010.1 protein AED:0.31 eAED:0.31 QI:149|1|1|1|0.75|0.8|5|301|151; (*GB) gi|82621170|gb|ABB86273.1| (e_value=6e-106) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=6e-104) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=2e-101) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=1e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00041363g0012.1 protein AED:0.43 eAED:0.43 QI:228|1|0.5|1|1|1|2|0|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=5e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P62201|CALM_LILLO (e_value=7e-105) Calmodulin OS=Lilium longiflorum PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=6e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=5e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00029109g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.83|1|1|1|6|0|440; (*GB) gi|297805586|ref|XP_002870677.1| (e_value=0.0) hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=0.0) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.1 (e_value=0.0) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446;; (*ITAG) Solyc05g014530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8389595-8392288 transcript_region:SL2.40ch05:8389595..8392288+ go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00029109g0006.1 protein AED:0.14 eAED:0.16 QI:225|1|0.88|1|1|1|9|63|908; (*GB) gi|225425842|ref|XP_002265505.1| (e_value=0.0) PREDICTED: lipoxygenase 6, choloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAG3|LOX6_ARATH (e_value=0.0) Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1;; (*TAIR) AT1G67560.1 (e_value=0.0) | Symbols: LOX6 | PLAT/LH2 domain-containing lipoxygenase family protein | chr1:25319926-25324117 FORWARD LENGTH=917;; (*ITAG) Solyc05g014790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8966270-8971035 transcript_region:SL2.40ch05:8966270..8971035- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** B9RMJ4_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00025371g0002.1 protein AED:0.12 eAED:0.24 QI:0|0|0|0.75|0|0|4|0|283; (*ITAG) Solyc01g065740.2.1 (e_value=3e-51) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005931g0018.1 protein AED:0.14 eAED:0.14 QI:51|1|1|1|0.87|0.88|9|417|367; (*GB) gi|225456791|ref|XP_002277389.1| (e_value=0.0) PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis vinifera];; (*SWP) sp|P51173|APEA_DICDI (e_value=2e-34) DNA-(apurinic or apyrimidinic site) lyase OS=Dictyostelium discoideum GN=apeA PE=2 SV=2;; (*TAIR) AT3G48425.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:17931910-17934493 FORWARD LENGTH=364;; (*ITAG) Solyc03g111600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56288918-56298764 transcript_region:SL2.40ch03:56288918..56298764- go_terms:GO:0016491 functional_description:"Exodeoxyribonuclease III family protein expressed (AHRD V1 ***- Q2QTX4_ORYSJ); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth "; GO:0016491 NbS00005931g0019.1 protein AED:0.14 eAED:0.14 QI:0|0.62|0.55|1|1|1|9|0|1276; (*GB) gi|225456789|ref|XP_002275305.1| (e_value=0.0) PREDICTED: lysine-specific demethylase REF6-like [Vitis vinifera];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=0.0) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT3G48430.1 (e_value=0.0) | Symbols: REF6 | relative of early flowering 6 | chr3:17935609-17940456 FORWARD LENGTH=1360;; (*ITAG) Solyc03g111590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56276500-56284535 transcript_region:SL2.40ch03:56276500..56284535- go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger protein-like (AHRD V1 *--- Q9FYD7_ARATH); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005515,GO:0003700 NbS00005931g0020.1 protein AED:0.27 eAED:0.27 QI:103|1|0.66|1|1|1|6|0|521; (*GB) gi|225456787|ref|XP_002277300.1| (e_value=3e-137) PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RJC5|C3H67_ARATH (e_value=2e-112) Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2;; (*TAIR) AT5G63260.1 (e_value=1e-113) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:25361900-25364453 FORWARD LENGTH=435;; (*ITAG) Solyc03g111580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56264331-56273480 transcript_region:SL2.40ch03:56264331..56273480- go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 43 (AHRD V1 ***- C3H43_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00005931g0021.1 protein AED:0.24 eAED:0.34 QI:2133|0.69|0.58|0.93|0.73|0.69|43|0|920; (*GB) gi|255540397|ref|XP_002511263.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=0.0) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=0.0) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56238115-56263186 transcript_region:SL2.40ch03:56238115..56263186+ go_terms:GO:0016757 functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8TE42_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00033125g0004.1 protein AED:0.11 eAED:0.13 QI:0|0.5|0.33|1|0.5|0.66|3|0|297; (*GB) gi|225423515|ref|XP_002274549.1| (e_value=7e-94) PREDICTED: probable WRKY transcription factor 57 [Vitis vinifera];; (*SWP) sp|Q9C983|WRK57_ARATH (e_value=1e-64) Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1;; (*TAIR) AT1G69310.2 (e_value=1e-65) | Symbols: WRKY57, ATWRKY57 | WRKY DNA-binding protein 57 | chr1:26056118-26057909 REVERSE LENGTH=287;; (*ITAG) Solyc05g012500.2.1 (e_value=2e-125) genomic_reference:SL2.40ch05 gene_region:5742002-5745384 transcript_region:SL2.40ch05:5742002..5745384- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 *-*- Q6IEQ2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00027055g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|172; (*GB) gi|116332|sp|P29060.1|CHIA_TOBAC (e_value=1e-111) RecName: Full=Acidic endochitinase; Flags: Precursor;; (*SWP) sp|P29060|CHIA_TOBAC (e_value=4e-113) Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT5G24090.1 (e_value=4e-70) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc05g050130.2.1 (e_value=1e-106) genomic_reference:SL2.40ch05 gene_region:59255269-59257111 transcript_region:SL2.40ch05:59255269..59257111- go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00024073g0004.1 protein AED:0.13 eAED:0.20 QI:52|0|0|1|0|0.25|4|0|212; (*GB) gi|57918684|gb|AAW59435.1| (e_value=4e-105) decreased apical dominance protein [Petunia x hybrida];; (*SWP) sp|Q8VY26|CCD8_ARATH (e_value=2e-75) Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=2 SV=1;; (*TAIR) AT4G32810.1 (e_value=1e-76) | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570;; (*ITAG) Solyc08g066650.2.1 (e_value=4e-106) genomic_reference:SL2.40ch08 gene_region:52620195-52623269 transcript_region:SL2.40ch08:52620195..52623269- go_terms:GO:0003834 functional_description:"Carotenoid cleavage dioxygenase 8"; GO:0003834 NbS00025880g0004.1 protein AED:0.03 eAED:0.03 QI:218|0.8|0.83|1|1|1|6|157|599; (*GB) gi|357468175|ref|XP_003604372.1| (e_value=0.0) Peptidase M50 family [Medicago truncatula];; (*TAIR) AT1G17870.1 (e_value=0.0) | Symbols: ATEGY3, EGY3 | ethylene-dependent gravitropism-deficient and yellow-green-like 3 | chr1:6150036-6152185 REVERSE LENGTH=573;; (*ITAG) Solyc01g106820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86331805-86335838 transcript_region:SL2.40ch01:86331805..86335838+ functional_description:"Peptidase M50 family (AHRD V1 ***- B6UET0_MAIZE)"; NbS00024085g0001.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.33|1|1|1|3|0|384; (*GB) gi|2499614|sp|Q40517.1|NTF3_TOBAC (e_value=0.0) RecName: Full=Mitogen-activated protein kinase homolog NTF3; AltName: Full=P43;; (*SWP) sp|Q40517|NTF3_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1;; (*TAIR) AT1G10210.2 (e_value=0.0) | Symbols: ATMPK1, MPK1 | mitogen-activated protein kinase 1 | chr1:3349579-3350776 FORWARD LENGTH=370;; (*ITAG) Solyc04g080730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62421080-62429518 transcript_region:SL2.40ch04:62421080..62429518+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** D9J1Y9_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00000814g0005.1 protein AED:0.09 eAED:0.09 QI:207|0.5|0.8|1|0.5|0.4|5|447|132; (*GB) gi|225452246|ref|XP_002269112.1| (e_value=2e-64) PREDICTED: mitochondrial inner membrane protease ATP23 [Vitis vinifera];; (*SWP) sp|Q6C253|ATP23_YARLI (e_value=2e-18) Mitochondrial inner membrane protease ATP23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATP23 PE=3 SV=1;; (*TAIR) AT3G03420.1 (e_value=1e-60) | Symbols: | Ku70-binding family protein | chr3:812527-813644 FORWARD LENGTH=194;; (*ITAG) Solyc01g009450.2.1 (e_value=9e-64) genomic_reference:SL2.40ch01 gene_region:3676623-3681923 transcript_region:SL2.40ch01:3676623..3681923- go_terms:GO:0004677,GO:0004222 functional_description:"Mitochondrial inner membrane protease ATP23 (AHRD V1 ***- D0NY32_PHYIN); contains Interpro domain(s) IPR019165 Peptidase M76, ATP23 "; GO:0004677,GO:0004222 NbS00000814g0006.1 protein AED:0.45 eAED:0.47 QI:0|0.5|0|1|0|0.33|3|0|106; (*GB) gi|110349919|emb|CAJ19273.1| (e_value=4e-41) putative RNA binding protein [Solanum commersonii];; (*TAIR) AT3G04610.1 (e_value=1e-23) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc06g084000.2.1 (e_value=1e-43) genomic_reference:SL2.40ch06 gene_region:45560228-45563126 transcript_region:SL2.40ch06:45560228..45563126- go_terms:GO:0003723 functional_description:"Heterogeneous nuclear ribonucleoprotein K (AHRD V1 *--- B5X1A5_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00000814g0007.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|0|0.5|2|0|79; (*GB) gi|356504987|ref|XP_003521274.1| (e_value=2e-21) PREDICTED: KH domain-containing protein At4g18375-like [Glycine max];; (*TAIR) AT3G04610.1 (e_value=6e-17) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc09g066120.2.1 (e_value=4e-28) genomic_reference:SL2.40ch09 gene_region:60118119-60126053 transcript_region:SL2.40ch09:60118119..60126053+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00000814g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|228; (*GB) gi|99029884|gb|ABF61217.1| (e_value=1e-51) CBF/DREB1 transcription factor [Vitis amurensis];; (*SWP) sp|Q8S9Z5|DRE1F_ORYSJ (e_value=2e-42) Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1;; (*TAIR) AT4G25490.1 (e_value=1e-39) | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding factor 1 | chr4:13021921-13022562 REVERSE LENGTH=213;; (*ITAG) Solyc01g009440.1.1 (e_value=9e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3662862-3663494 transcript_region:SL2.40ch01:3662862..3663494- go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 *-** ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00037807g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|440; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=2e-146) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=4e-20) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc02g027080.1.1 (e_value=4e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00054329g0005.1 protein AED:0.12 eAED:0.12 QI:1432|1|1|1|1|1|2|231|232; (*GB) gi|224135907|ref|XP_002327333.1| (e_value=2e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|O22938|Y2182_ARATH (e_value=9e-35) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT1G34420.1 (e_value=3e-60) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr1:12584587-12587570 FORWARD LENGTH=966;; (*ITAG) Solyc11g017280.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8153041-8156606 transcript_region:SL2.40ch11:8153041..8156606+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002424g0002.1 protein AED:0.09 eAED:0.09 QI:66|0.85|0.87|1|0.71|0.62|8|562|718; (*GB) gi|303305632|gb|ADM13586.1| (e_value=0.0) S-domain receptor-like kinase [Nicotiana tabacum];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.2 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=842;; (*ITAG) Solyc02g079540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38647401-38650439 transcript_region:SL2.40ch02:38647401..38650439+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00002424g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.57|1|1|1|7|146|896; (*GB) gi|255567489|ref|XP_002524724.1| (e_value=0.0) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|O64781|Y1639_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g61390 OS=Arabidopsis thaliana GN=At1g61390 PE=2 SV=1;; (*TAIR) AT1G61390.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:22650338-22653639 REVERSE LENGTH=831;; (*ITAG) Solyc03g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1281367-1289556 transcript_region:SL2.40ch03:1281367..1289556+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00003094g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.78|0.73|1|0.78|0.73|15|539|412; (*GB) gi|255538588|ref|XP_002510359.1| (e_value=0.0) cop9 complex subunit, putative [Ricinus communis];; (*SWP) sp|Q8L5U0|CSN4_ARATH (e_value=0.0) COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2;; (*TAIR) AT5G42970.1 (e_value=0.0) | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 | Proteasome component (PCI) domain protein | chr5:17237470-17240649 REVERSE LENGTH=397;; (*ITAG) Solyc04g080160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62012763-62021439 transcript_region:SL2.40ch04:62012763..62021439+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 4 (AHRD V1 ***- B4FCA4_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00003094g0009.1 protein AED:0.28 eAED:0.30 QI:0|0.75|0.64|1|0.81|0.76|17|0|690; (*GB) gi|356518975|ref|XP_003528150.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100782659 [Glycine max];; (*TAIR) AT1G45150.1 (e_value=0.0) | Symbols: | unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:17077615-17082330 REVERSE LENGTH=643;; (*ITAG) Solyc04g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61990127-62004498 transcript_region:SL2.40ch04:61990127..62004498- functional_description:"Myxococcales GC_trans_RRR domain protein (AHRD V1 *-*- B4UJ57_ANASK)"; NbS00051298g0001.1 protein AED:0.33 eAED:0.33 QI:90|0.81|0.91|1|0.81|0.66|12|332|373; (*GB) gi|82400126|gb|ABB72802.1| (e_value=0.0) L-allo-threonine aldolase-related protein [Solanum tuberosum];; (*SWP) sp|O07051|LTAA_AERJA (e_value=4e-96) L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1;; (*TAIR) AT1G08630.4 (e_value=0.0) | Symbols: THA1 | threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=358;; (*ITAG) Solyc04g009960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3280106-3284080 transcript_region:SL2.40ch04:3280106..3284080+ go_terms:GO:0008732 functional_description:"L-allo-threonine aldolase (AHRD V1 **** D7RJ69_CARPA); contains Interpro domain(s) IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase "; GO:0008732 NbS00003952g0006.1 protein AED:0.52 eAED:0.52 QI:0|0.2|0.16|0.66|0.2|0.33|6|27|202; (*GB) gi|351725897|ref|NP_001238132.1| (e_value=7e-90) uncharacterized protein LOC100306136 [Glycine max];; (*SWP) sp|Q8L910|GPX4_ARATH (e_value=6e-84) Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1;; (*TAIR) AT2G48150.1 (e_value=4e-85) | Symbols: ATGPX4, GPX4 | glutathione peroxidase 4 | chr2:19688109-19689099 REVERSE LENGTH=170;; (*ITAG) Solyc09g064850.2.1 (e_value=3e-102) genomic_reference:SL2.40ch09 gene_region:57914680-57927124 transcript_region:SL2.40ch09:57914680..57927124+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9T4A6_RICCO); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00015658g0006.1 protein AED:0.34 eAED:0.34 QI:229|0.33|0.5|1|0.33|0.75|4|0|143; (*GB) gi|356501491|ref|XP_003519558.1| (e_value=2e-41) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650-like [Glycine max];; (*SWP) sp|C0LGE0|Y1765_ARATH (e_value=6e-42) Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1;; (*TAIR) AT1G07650.1 (e_value=4e-43) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1014;; (*ITAG) Solyc07g055810.2.1 (e_value=4e-59) genomic_reference:SL2.40ch07 gene_region:61058927-61068788 transcript_region:SL2.40ch07:61058927..61068788+ go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00033458g0002.1 protein AED:0.08 eAED:0.08 QI:307|1|0.97|1|0.79|0.8|35|189|3227; (*GB) gi|334185862|ref|NP_190607.2| (e_value=0.0) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G50380.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1162) | chr3:18686527-18700533 REVERSE LENGTH=3072;; (*ITAG) Solyc02g090140.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:46356349-46363361 transcript_region:SL2.40ch02:46356349..46363361- functional_description:"Unknown Protein (AHRD V1)"; NbS00000965g0005.1 protein AED:0.08 eAED:0.08 QI:75|1|0.66|1|1|1|3|287|116; (*GB) gi|297741916|emb|CBI33351.3| (e_value=1e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q60700|M3K12_MOUSE (e_value=3e-21) Mitogen-activated protein kinase kinase kinase 12 OS=Mus musculus GN=Map3k12 PE=1 SV=1;; (*TAIR) AT1G04700.1 (e_value=4e-55) | Symbols: | PB1 domain-containing protein tyrosine kinase | chr1:1316919-1320653 FORWARD LENGTH=1042;; (*ITAG) Solyc09g091460.2.1 (e_value=4e-54) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000965g0008.1 protein AED:0.09 eAED:0.09 QI:12|1|0.8|1|1|1|5|0|481; (*GB) gi|255560213|ref|XP_002521124.1| (e_value=1e-105) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q54TM7|DRKD_DICDI (e_value=7e-23) Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum GN=drkD PE=2 SV=1;; (*TAIR) AT3G24715.1 (e_value=8e-100) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:9025849-9029948 FORWARD LENGTH=1117;; (*ITAG) Solyc09g091460.2.1 (e_value=3e-89) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000965g0009.1 protein AED:0.72 eAED:0.76 QI:0|0|0|0.4|0.5|0.6|5|0|470; (*GB) gi|255560213|ref|XP_002521124.1| (e_value=3e-44) serine/threonine protein kinase, putative [Ricinus communis];; (*TAIR) AT3G24715.1 (e_value=1e-34) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:9025849-9029948 FORWARD LENGTH=1117;; (*ITAG) Solyc09g091460.2.1 (e_value=4e-33) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00029008g0004.1 protein AED:0.18 eAED:0.21 QI:0|0.68|0.56|0.95|0.81|0.78|23|621|1203; (*GB) gi|255539380|ref|XP_002510755.1| (e_value=0.0) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*SWP) sp|Q6DFB8|TTC37_XENLA (e_value=3e-35) Tetratricopeptide repeat protein 37 OS=Xenopus laevis GN=ttc37 PE=2 SV=1;; (*TAIR) AT1G76630.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1168;; (*ITAG) Solyc04g082980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00034253g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.84|0.65|0.95|0.84|0.9|20|0|1260; (*GB) gi|359480247|ref|XP_002282028.2| (e_value=0.0) PREDICTED: paladin [Vitis vinifera];; (*SWP) sp|Q9ULE6|PALD_HUMAN (e_value=3e-45) Paladin OS=Homo sapiens GN=PALD PE=1 SV=3;; (*TAIR) AT3G62010.1 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254;; (*ITAG) Solyc01g068610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70202881-70220200 transcript_region:SL2.40ch01:70202881..70220200+ functional_description:"Metal ion binding protein (AHRD V1 **-- D7LSR9_ARALY)"; NbS00047990g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.6|1|1|1|5|202|459; (*GB) gi|359479852|ref|XP_002271044.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247717 [Vitis vinifera];; (*TAIR) AT2G48030.1 (e_value=6e-152) | Symbols: | DNAse I-like superfamily protein | chr2:19647834-19649988 REVERSE LENGTH=438;; (*ITAG) Solyc09g074210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61493939-61496946 transcript_region:SL2.40ch09:61493939..61496946+ functional_description:"Endonuclease/exonuclease/phosphatase family protein (AHRD V1 ***- D7LHF0_ARALY); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00044119g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|224142211|ref|XP_002324452.1| (e_value=7e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|O34948|YKWC_BACSU (e_value=1e-74) Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1;; (*TAIR) AT4G29120.1 (e_value=2e-153) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr4:14350861-14351865 FORWARD LENGTH=334;; (*ITAG) Solyc01g099240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81297091-81298341 transcript_region:SL2.40ch01:81297091..81298341+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"3-hydroxyisobutyrate dehydrogenase (AHRD V1 ***- A3ZMK4_9PLAN); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00024712g0004.1 protein AED:0.44 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|82; (*ITAG) Solyc04g049410.2.1 (e_value=4e-15) genomic_reference:SL2.40ch04 gene_region:41008448-41012773 transcript_region:SL2.40ch04:41008448..41012773+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024712g0011.1 protein AED:0.11 eAED:0.11 QI:149|0.77|0.8|1|0.55|0.5|10|328|772; (*GB) gi|255544480|ref|XP_002513301.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FKG6|PUB52_ARATH (e_value=7e-113) U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc04g049400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40970359-40975086 transcript_region:SL2.40ch04:40970359..40975086- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00024712g0012.1 protein AED:0.15 eAED:0.15 QI:197|1|0.95|1|0.82|0.87|24|0|807; (*GB) gi|225443241|ref|XP_002271570.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Vitis vinifera];; (*SWP) sp|Q5ZLD7|VPS53_CHICK (e_value=5e-156) Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1;; (*TAIR) AT1G50500.1 (e_value=0.0) | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking VPS53 family protein | chr1:18708217-18715597 REVERSE LENGTH=828;; (*ITAG) Solyc04g049490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41235273-41255192 transcript_region:SL2.40ch04:41235273..41255192+ go_terms:GO:0005215 functional_description:"Vacuolar protein sorting-associated protein 53 (AHRD V1 **-- D0NTZ4_PHYIN); contains Interpro domain(s) IPR007234 Vps53-like, N-terminal "; GO:0005215 NbS00031385g0001.1 protein AED:0.26 eAED:1.00 QI:0|0|0|1|0|0|2|0|119; (*ITAG) Solyc04g057950.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00010343g0006.1 protein AED:0.14 eAED:0.14 QI:186|1|1|1|1|1|2|498|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=1e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P62201|CALM_LILLO (e_value=2e-105) Calmodulin OS=Lilium longiflorum PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=2e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=1e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00010343g0002.1 protein AED:0.39 eAED:0.73 QI:0|0|0|1|1|1|2|0|64 NbS00010343g0005.1 protein AED:0.38 eAED:0.56 QI:7|-1|0|1|-1|0|1|0|147; (*GB) gi|20336341|gb|AAM18178.1| (e_value=1e-14) anther protein [Nicotiana tabacum];; (*ITAG) Solyc01g008940.2.1 (e_value=5e-20) genomic_reference:SL2.40ch01 gene_region:2958618-2958992 transcript_region:SL2.40ch01:2958618..2958992+ functional_description:"Anther protein (AHRD V1 ***- Q8RX90_TOBAC)"; NbS00020087g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.8|1|0.75|0.6|5|0|360; (*GB) gi|351629615|gb|AEQ54771.1| (e_value=0.0) KDDL-tailed cysteine proteinase CP4 [Coffea canephora];; (*SWP) sp|P25803|CYSEP_PHAVU (e_value=2e-170) Vignain OS=Phaseolus vulgaris PE=2 SV=2;; (*TAIR) AT5G50260.1 (e_value=7e-163) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc05g013920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7353763-7355636 transcript_region:SL2.40ch05:7353763..7355636+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00020087g0005.1 protein AED:0.41 eAED:0.54 QI:96|0|0.5|1|1|1|2|0|63; (*TAIR) AT1G67785.1 (e_value=3e-18) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25416100-25416984 REVERSE LENGTH=63;; (*ITAG) Solyc05g013910.2.1 (e_value=6e-26) genomic_reference:SL2.40ch05 gene_region:7349028-7353433 transcript_region:SL2.40ch05:7349028..7353433+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020087g0013.1 protein AED:0.07 eAED:0.07 QI:491|0.87|0.88|1|0.87|0.77|9|301|431; (*GB) gi|359481563|ref|XP_002277659.2| (e_value=4e-144) PREDICTED: uncharacterized protein LOC100250012 [Vitis vinifera];; (*TAIR) AT5G05140.1 (e_value=5e-99) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436;; (*ITAG) Solyc10g080930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61435700-61439911 transcript_region:SL2.40ch10:61435700..61439911- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 *--- TCEA2_HUMAN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00060296g0004.1 protein AED:0.25 eAED:0.27 QI:406|0.66|0.5|1|1|1|4|0|180; (*GB) gi|224114075|ref|XP_002316660.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GX77|FB316_ARATH (e_value=6e-30) F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1;; (*TAIR) AT1G61340.1 (e_value=5e-31) | Symbols: | F-box family protein | chr1:22628526-22629741 FORWARD LENGTH=185;; (*ITAG) Solyc10g005480.2.1 (e_value=1e-88) genomic_reference:SL2.40ch10 gene_region:353240-354912 transcript_region:SL2.40ch10:353240..354912- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00013932g0015.1 protein AED:0.35 eAED:0.35 QI:0|0.4|0.5|1|0.8|0.66|6|0|249; (*GB) gi|351723391|ref|NP_001237789.1| (e_value=4e-114) uncharacterized protein LOC100500164 [Glycine max];; (*SWP) sp|P42791|RL182_ARATH (e_value=4e-106) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2;; (*TAIR) AT3G05590.1 (e_value=3e-107) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187;; (*ITAG) Solyc01g099900.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:81786875-81789836 transcript_region:SL2.40ch01:81786875..81789836+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e "; GO:0003735,GO:0003723 NbS00013932g0013.1 protein AED:0.09 eAED:0.09 QI:106|0.8|0.83|1|0.6|0.83|6|214|220; (*GB) gi|224123068|ref|XP_002318986.1| (e_value=2e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84WN3|SWT17_ARATH (e_value=4e-62) Bidirectional sugar transporter SWEET17 OS=Arabidopsis thaliana GN=SWEET17 PE=2 SV=2;; (*TAIR) AT4G15920.1 (e_value=2e-63) | Symbols: SWEET17, AtSWEET17 | Nodulin MtN3 family protein | chr4:9030742-9033343 REVERSE LENGTH=241;; (*ITAG) Solyc01g099870.1.1 (e_value=4e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81766289-81768506 transcript_region:SL2.40ch01:81766289..81768506- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00013932g0014.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|576; (*GB) gi|224128446|ref|XP_002320332.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXK7|PME41_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2;; (*TAIR) AT4G02330.1 (e_value=0.0) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573;; (*ITAG) Solyc09g075330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00051566g0007.1 protein AED:0.43 eAED:0.64 QI:0|0|0|0.5|0|0.5|2|0|104; (*GB) gi|356561596|ref|XP_003549067.1| (e_value=4e-24) PREDICTED: uncharacterized protein LOC100788210 [Glycine max];; (*TAIR) AT5G13140.1 (e_value=3e-20) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:4170688-4171744 REVERSE LENGTH=267;; (*ITAG) Solyc02g094330.2.1 (e_value=6e-38) genomic_reference:SL2.40ch02 gene_region:49465193-49466605 transcript_region:SL2.40ch02:49465193..49466605- functional_description:"Pollen proteins Ole e I family protein (AHRD V1 ***- B6SLJ6_MAIZE)"; NbS00051566g0008.1 protein AED:0.94 eAED:1.00 QI:36|0|0|0.5|1|1|2|132|13 NbS00051566g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.8|0.66|0.83|1|1|6|508|155; (*GB) gi|255635064|gb|ACU17890.1| (e_value=6e-101) unknown [Glycine max];; (*SWP) sp|A2YUL5|ARP2_ORYSI (e_value=2e-97) Actin-related protein 2 OS=Oryza sativa subsp. indica GN=ARP2 PE=2 SV=2;; (*TAIR) AT3G27000.1 (e_value=6e-98) | Symbols: ARP2, ATARP2, WRM | actin related protein 2 | chr3:9952787-9955784 REVERSE LENGTH=389;; (*ITAG) Solyc02g094320.2.1 (e_value=1e-104) genomic_reference:SL2.40ch02 gene_region:49456402-49464809 transcript_region:SL2.40ch02:49456402..49464809+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q16P63_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00016838g0011.1 protein AED:0.31 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|158; (*GB) gi|147800604|emb|CAN68579.1| (e_value=1e-58) hypothetical protein VITISV_034891 [Vitis vinifera];; (*SWP) sp|O22928|PUSH_ARATH (e_value=5e-33) Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1;; (*TAIR) AT2G30320.1 (e_value=4e-34) | Symbols: | Pseudouridine synthase family protein | chr2:12925728-12927896 REVERSE LENGTH=510;; (*ITAG) Solyc09g056260.2.1 (e_value=2e-81) genomic_reference:SL2.40ch09 gene_region:43665438-43678768 transcript_region:SL2.40ch09:43665438..43678768- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase family protein (AHRD V1 **** D7LBM5_ARALY); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00016838g0013.1 protein AED:0.20 eAED:0.20 QI:1|0.75|0.77|1|0.75|0.77|9|0|466; (*GB) gi|225434396|ref|XP_002270785.1| (e_value=0.0) PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SR86|AGT23_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1;; (*TAIR) AT3G08860.1 (e_value=0.0) | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696754-2699087 REVERSE LENGTH=481;; (*ITAG) Solyc10g076250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58474750-58478564 transcript_region:SL2.40ch10:58474750..58478564+ go_terms:GO:0030170 functional_description:"Aminotransferase like protein (AHRD V1 ***- Q0WWF1_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00016838g0012.1 protein AED:0.32 eAED:0.45 QI:0|0|0|1|0|0|2|0|152; (*GB) gi|147800604|emb|CAN68579.1| (e_value=5e-19) hypothetical protein VITISV_034891 [Vitis vinifera];; (*SWP) sp|O22928|PUSH_ARATH (e_value=9e-15) Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1;; (*TAIR) AT2G30320.1 (e_value=7e-16) | Symbols: | Pseudouridine synthase family protein | chr2:12925728-12927896 REVERSE LENGTH=510;; (*ITAG) Solyc09g056260.2.1 (e_value=2e-37) genomic_reference:SL2.40ch09 gene_region:43665438-43678768 transcript_region:SL2.40ch09:43665438..43678768- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase family protein (AHRD V1 **** D7LBM5_ARALY); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00052539g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|104; (*TAIR) AT1G57765.1 (e_value=1e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09645.1); Has 68 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21393493-21394534 FORWARD LENGTH=107;; (*ITAG) Solyc11g028080.1.1 (e_value=3e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:16650477-16651843 transcript_region:SL2.40ch11:16650477..16651843- functional_description:"Unknown Protein (AHRD V1)"; NbS00004456g0015.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.75|1|0.73|0.75|16|8|677; (*GB) gi|183238712|gb|ACC60982.1| (e_value=0.0) beta-galactosidase 2 precursor [Petunia x hybrida];; (*SWP) sp|Q9SCU9|BGA13_ARATH (e_value=3e-159) Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1;; (*TAIR) AT2G16730.1 (e_value=2e-160) | Symbols: BGAL13 | glycosyl hydrolase family 35 protein | chr2:7261986-7266105 REVERSE LENGTH=848;; (*ITAG) Solyc10g055470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52292105-52295932 transcript_region:SL2.40ch10:52292105..52295932- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B2LYJ4_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00004456g0017.1 protein AED:0.11 eAED:0.11 QI:0|0.88|0.73|1|0.77|0.73|19|0|1793; (*GB) gi|356544882|ref|XP_003540876.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=0.0) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc10g055450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52249650-52261711 transcript_region:SL2.40ch10:52249650..52261711+ go_terms:GO:0005488,GO:0005622 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-*- D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0005488,GO:0005622 NbS00004456g0016.1 protein AED:0.50 eAED:0.51 QI:0|0|0|1|0|0|2|0|154; (*GB) gi|3299896|gb|AAC25984.1| (e_value=9e-62) beta-galactosidase [Solanum lycopersicum];; (*SWP) sp|P45582|BGAL_ASPOF (e_value=4e-52) Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1;; (*TAIR) AT3G13750.1 (e_value=4e-51) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=2e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00025359g0007.1 protein AED:0.21 eAED:0.21 QI:213|1|1|1|0|0.33|3|560|67; (*GB) gi|356539300|ref|XP_003538137.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100305574 [Glycine max];; (*TAIR) AT4G21105.1 (e_value=9e-33) | Symbols: | cytochrome-c oxidases;electron carriers | chr4:11266273-11266724 FORWARD LENGTH=68; NbS00025359g0008.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.33|1|1|3|0|220 NbS00026558g0003.1 protein AED:0.06 eAED:0.06 QI:196|0.8|1|1|1|1|6|71|194; (*GB) gi|417063|sp|Q03416.1|GLOB_TOBAC (e_value=4e-134) RecName: Full=Floral homeotic protein GLOBOSA;; (*SWP) sp|Q03416|GLOB_TOBAC (e_value=1e-135) Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1;; (*TAIR) AT5G20240.1 (e_value=4e-69) | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208;; (*ITAG) Solyc08g067230.2.1 (e_value=3e-123) genomic_reference:SL2.40ch08 gene_region:53468785-53473402 transcript_region:SL2.40ch08:53468785..53473402+ go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00030601g0002.1 protein AED:0.02 eAED:0.02 QI:63|0|0.5|1|0|0.5|2|258|68 NbS00055410g0001.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|0.66|1|1|3|0|171; (*GB) gi|86450874|gb|ABC96720.1| (e_value=3e-86) plastid fibrillin 2 [Coffea canephora];; (*SWP) sp|Q94KU5|PAP3_BRACM (e_value=6e-79) Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1;; (*TAIR) AT2G35490.1 (e_value=1e-79) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g076480.2.1 (e_value=1e-103) genomic_reference:SL2.40ch08 gene_region:57653458-57656810 transcript_region:SL2.40ch08:57653458..57656810+ go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00003287g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.75|0.4|1|1|1|5|0|271; (*GB) gi|19913105|emb|CAC84545.1| (e_value=0.0) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|P0C582|M2OM_NEUCR (e_value=4e-54) Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU04792 PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=5e-156) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=3e-177) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00003287g0012.1 protein AED:0.38 eAED:0.39 QI:0|1|0.33|1|1|1|3|0|230; (*GB) gi|359482139|ref|XP_002276765.2| (e_value=5e-86) PREDICTED: 5'-adenylylsulfate reductase-like 5-like [Vitis vinifera];; (*SWP) sp|Q84JN1|APRL7_ARATH (e_value=3e-75) 5'-adenylylsulfate reductase-like 7 OS=Arabidopsis thaliana GN=APRL7 PE=2 SV=1;; (*TAIR) AT5G18120.1 (e_value=2e-76) | Symbols: ATAPRL7, APRL7 | APR-like 7 | chr5:5991385-5993696 FORWARD LENGTH=289;; (*ITAG) Solyc01g005600.2.1 (e_value=7e-141) genomic_reference:SL2.40ch01 gene_region:420216-426321 transcript_region:SL2.40ch01:420216..426321- go_terms:GO:0045454 functional_description:"Adenosine 5&apos-phosphosulfate reductase 8 (AHRD V1 ***- Q5EUC2_MAIZE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00003287g0013.1 protein AED:0.27 eAED:0.27 QI:98|1|1|1|0.75|0.8|5|106|272; (*GB) gi|147786948|emb|CAN71137.1| (e_value=1e-115) hypothetical protein VITISV_025410 [Vitis vinifera];; (*SWP) sp|O80522|GDL2_ARATH (e_value=6e-97) GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1;; (*TAIR) AT1G09390.1 (e_value=5e-98) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:3031264-3033415 FORWARD LENGTH=370;; (*ITAG) Solyc01g005610.2.1 (e_value=1e-164) genomic_reference:SL2.40ch01 gene_region:427617-430354 transcript_region:SL2.40ch01:427617..430354+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g09390 (AHRD V1 ***- GDL2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003287g0004.1 protein AED:0.37 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|104 NbS00006309g0001.1 protein AED:0.35 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|76161012|gb|ABA40469.1| (e_value=1e-112) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q9FDZ9|RL212_ARATH (e_value=8e-102) 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1;; (*TAIR) AT1G57860.1 (e_value=6e-103) | Symbols: | Translation protein SH3-like family protein | chr1:21430034-21430827 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=1e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00006309g0014.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|133 NbS00006309g0017.1 protein AED:0.14 eAED:0.14 QI:147|1|1|1|1|1|3|133|303; (*GB) gi|255587731|ref|XP_002534375.1| (e_value=2e-159) Ubiquitin ligase SINAT2, putative [Ricinus communis];; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=1e-156) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1;; (*TAIR) AT3G58040.1 (e_value=1e-157) | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308;; (*ITAG) Solyc10g080570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61131100-61132920 transcript_region:SL2.40ch10:61131100..61132920+ go_terms:GO:0016567,GO:0005634,GO:0008270 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-- B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0016567,GO:0005634,GO:0008270 NbS00006309g0020.1 protein AED:0.27 eAED:0.27 QI:200|0.66|0.5|1|0.88|0.8|10|0|324; (*GB) gi|38488407|emb|CAE55203.1| (e_value=0.0) protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|P93749|Y2197_ARATH (e_value=1e-171) Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1;; (*TAIR) AT2G41970.1 (e_value=9e-173) | Symbols: | Protein kinase superfamily protein | chr2:17520517-17522304 REVERSE LENGTH=365;; (*ITAG) Solyc10g080580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61134357-61136377 transcript_region:SL2.40ch10:61134357..61136377+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006309g0022.1 protein AED:0.32 eAED:0.32 QI:73|1|1|1|1|0.83|6|0|291; (*GB) gi|255579017|ref|XP_002530360.1| (e_value=1e-123) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q39147|3MG_ARATH (e_value=2e-116) DNA-3-methyladenine glycosylase OS=Arabidopsis thaliana GN=MAG PE=2 SV=1;; (*TAIR) AT3G12040.1 (e_value=2e-117) | Symbols: | DNA-3-methyladenine glycosylase (MAG) | chr3:3835349-3836781 REVERSE LENGTH=254;; (*ITAG) Solyc10g080560.1.1 (e_value=4e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61124345-61128371 transcript_region:SL2.40ch10:61124345..61128371+ go_terms:GO:0008725 functional_description:"DNA-3-methyladenine glycosylase (AHRD V1 **** B6U4R7_MAIZE); contains Interpro domain(s) IPR003180 Methylpurine-DNA glycosylase (MPG) "; GO:0008725 NbS00015568g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|255558584|ref|XP_002520317.1| (e_value=2e-145) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FVX2|PP129_ARATH (e_value=3e-126) Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2;; (*TAIR) AT1G77360.1 (e_value=3e-127) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=517;; (*ITAG) Solyc11g070040.1.1 (e_value=1e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51683590-51685026 transcript_region:SL2.40ch11:51683590..51685026+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015568g0013.1 protein AED:0.36 eAED:0.36 QI:338|0.9|0.90|1|1|1|11|737|545; (*GB) gi|350536369|ref|NP_001234755.1| (e_value=0.0) lecithine cholesterol acyltransferase-like protein [Solanum lycopersicum];; (*SWP) sp|Q71N54|LCAT4_ARATH (e_value=0.0) Lecithine-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=2 SV=1;; (*TAIR) AT4G19860.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10777655-10780260 REVERSE LENGTH=535;; (*ITAG) Solyc02g068920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33380676-33389274 transcript_region:SL2.40ch02:33380676..33389274- go_terms:GO:0006629 functional_description:"Lecithin cholesterol acyltransferase (AHRD V1 ***- A2Q294_MEDTR); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00015568g0015.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.6|0.5|0.6|5|0|793; (*GB) gi|356529971|ref|XP_003533559.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g19890-like [Glycine max];; (*SWP) sp|P0C8Q3|PP326_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1;; (*TAIR) AT4G19890.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10786948-10789053 REVERSE LENGTH=701;; (*ITAG) Solyc02g068890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33349726-33352122 transcript_region:SL2.40ch02:33349726..33352122+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015568g0014.1 protein AED:0.33 eAED:0.33 QI:455|1|0.71|1|0.5|0.42|7|0|581; (*GB) gi|225423710|ref|XP_002277727.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250825 [Vitis vinifera];; (*TAIR) AT5G45030.2 (e_value=0.0) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607;; (*ITAG) Solyc02g068910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33372930-33380165 transcript_region:SL2.40ch02:33372930..33380165+ go_terms:GO:0003824 functional_description:"Peptidase trypsin-like serine and cysteine proteases (Fragment) (AHRD V1 ***- A2Q138_MEDTR); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00015568g0019.1 protein AED:0.54 eAED:0.55 QI:0|0|0|0.5|0.33|0.25|4|0|249; (*GB) gi|359485453|ref|XP_003633276.1| (e_value=2e-59) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-37) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47090.1 (e_value=5e-39) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17341512-17344645 REVERSE LENGTH=1009;; (*ITAG) Solyc06g006020.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1036961-1040075 transcript_region:SL2.40ch06:1036961..1040075- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015568g0018.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|5|0|446; (*GB) gi|359483685|ref|XP_002263372.2| (e_value=1e-75) PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-44) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-45) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc06g006040.1.1 (e_value=9e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00015568g0017.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|250; (*GB) gi|147843440|emb|CAN79970.1| (e_value=1e-51) hypothetical protein VITISV_043680 [Vitis vinifera];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=8e-27) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G07280.1 (e_value=6e-28) | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192;; (*ITAG) Solyc06g006010.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1012540-1015805 transcript_region:SL2.40ch06:1012540..1015805+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00041647g0005.1 protein AED:0.21 eAED:0.24 QI:116|0.55|0.6|1|0.33|0.3|10|128|581; (*GB) gi|225463055|ref|XP_002268417.1| (e_value=6e-148) PREDICTED: uncharacterized protein LOC100267143 [Vitis vinifera];; (*TAIR) AT2G12400.1 (e_value=4e-138) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541;; (*ITAG) Solyc03g117280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60511944-60516391 transcript_region:SL2.40ch03:60511944..60516391+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007871g0010.1 protein AED:0.01 eAED:0.01 QI:62|1|1|1|0.75|0.6|5|111|375; (*GB) gi|255585218|ref|XP_002533311.1| (e_value=2e-135) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O23470|GDL64_ARATH (e_value=7e-72) GDSL esterase/lipase At4g16230 OS=Arabidopsis thaliana GN=At4g16230 PE=2 SV=2;; (*TAIR) AT1G71250.1 (e_value=2e-72) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26860125-26861582 FORWARD LENGTH=374;; (*ITAG) Solyc06g065530.2.1 (e_value=1e-162) genomic_reference:SL2.40ch06 gene_region:37300109-37303848 transcript_region:SL2.40ch06:37300109..37303848- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00007871g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|356524605|ref|XP_003530919.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100809590 [Glycine max];; (*TAIR) AT2G44020.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:18217737-18219260 REVERSE LENGTH=507;; (*ITAG) Solyc11g017050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7847836-7849332 transcript_region:SL2.40ch11:7847836..7849332+ functional_description:"Mitochondrial transcription termination factor (AHRD V1 **-- D8WKY3_TRITU); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00007871g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|224146438|ref|XP_002326007.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XID3|Y1343_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1;; (*TAIR) AT1G34300.1 (e_value=0.0) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc11g013880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7300896-7303409 transcript_region:SL2.40ch11:7300896..7303409+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00007871g0002.1 protein AED:0.31 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|255585216|ref|XP_002533310.1| (e_value=5e-126) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9XID3|Y1343_ARATH (e_value=2e-96) G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1;; (*TAIR) AT1G34300.1 (e_value=1e-97) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc11g013880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7300896-7303409 transcript_region:SL2.40ch11:7300896..7303409+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00007871g0114.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|1|1|4|0|904 NbS00007871g0102.1 protein AED:0.23 eAED:0.23 QI:376|1|1|1|0|0|3|15|99 NbS00007871g0117.1 protein AED:0.10 eAED:0.10 QI:254|0.66|0.37|1|0.33|0.31|16|0|1585 NbS00007347g0003.1 protein AED:0.18 eAED:0.19 QI:0|0.41|0.27|0.94|0.82|0.88|18|0|1110; (*GB) gi|225435754|ref|XP_002285720.1| (e_value=0.0) PREDICTED: importin-5 [Vitis vinifera];; (*SWP) sp|O60518|RNBP6_HUMAN (e_value=2e-78) Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00015586g0009.1 protein AED:0.11 eAED:0.11 QI:16|0.83|0.85|1|1|1|7|120|354; (*GB) gi|38488409|emb|CAE55204.1| (e_value=0.0) protein kinase 2 [Nicotiana tabacum];; (*SWP) sp|P93749|Y2197_ARATH (e_value=0.0) Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1;; (*TAIR) AT2G41970.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17520517-17522304 REVERSE LENGTH=365;; (*ITAG) Solyc10g078940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59908550-59910947 transcript_region:SL2.40ch10:59908550..59910947+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00015586g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.90|0.91|1|0.54|0.75|12|172|590; (*GB) gi|225441541|ref|XP_002280990.1| (e_value=0.0) PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera];; (*SWP) sp|Q8W0Z9|CCR4A_ARATH (e_value=0.0) Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1;; (*TAIR) AT3G58560.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:21650880-21653896 REVERSE LENGTH=602;; (*ITAG) Solyc10g078950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59912795-59921519 transcript_region:SL2.40ch10:59912795..59921519- functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 (AHRD V1 **-- D3TNH5_GLOMM); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00015586g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|135 NbS00015586g0104.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|0|2|0|126 NbS00005951g0001.1 protein AED:0.01 eAED:0.01 QI:57|0.5|0.66|1|0.5|0.66|3|128|92 NbS00005951g0007.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|1|0.66|3|0|260; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=4e-144) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=1e-145) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=7e-126) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=9e-148) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00044632g0009.1 protein AED:0.00 eAED:0.00 QI:113|1|1|1|1|1|2|227|167; (*GB) gi|319433441|gb|ADV57638.1| (e_value=2e-34) copper binding protein 3 [Gossypium hirsutum];; (*SWP) sp|O80517|BCB2_ARATH (e_value=2e-21) Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1;; (*TAIR) AT5G07475.1 (e_value=3e-28) | Symbols: | Cupredoxin superfamily protein | chr5:2364827-2365536 REVERSE LENGTH=192;; (*ITAG) Solyc10g037880.1.1 (e_value=5e-58) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:17826942-17828559 transcript_region:SL2.40ch10:17826942..17828559+ go_terms:GO:0030984,GO:0032403 functional_description:"Blue copper protein (AHRD V1 *--- B6UB13_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0030984,GO:0032403 NbS00001782g0001.1 protein AED:0.03 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|723; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=6e-65) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=4e-51) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=3e-27) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc04g072200.1.1 (e_value=3e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56792510-56794669 transcript_region:SL2.40ch04:56792510..56794669+ functional_description:"FRIGIDA (AHRD V1 *-*- B0Z0D2_ARALY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00058653g0003.1 protein AED:0.10 eAED:0.10 QI:65|1|1|1|0.6|0.5|6|700|223; (*GB) gi|224090173|ref|XP_002308948.1| (e_value=4e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|O22944|NTAQ1_ARATH (e_value=7e-92) Protein N-terminal glutamine amidohydrolase OS=Arabidopsis thaliana GN=At2g41760 PE=2 SV=1;; (*TAIR) AT2G41760.1 (e_value=5e-93) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:17422864-17424255 FORWARD LENGTH=221;; (*ITAG) Solyc04g015760.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:6045987-6051321 transcript_region:SL2.40ch04:6045987..6051321- go_terms:GO:0005515,GO:0070773 functional_description:"Protein N-terminal glutamine amidohydrolase (AHRD V1 **** D3PGL7_9MAXI); contains Interpro domain(s) IPR019161 Protein of unknown function WDYHV "; GO:0005515,GO:0070773 NbS00001167g0006.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|807; (*GB) gi|255550512|ref|XP_002516306.1| (e_value=0.0) Na(+)/H(+) antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=0.0) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=0.0) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g016160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6867711-6871990 transcript_region:SL2.40ch08:6867711..6871990- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00001167g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|12003398|gb|AAG43556.1|AF211538_1 (e_value=1e-28) Avr9/Cf-9 rapidly elicited protein 180 [Nicotiana tabacum]; NbS00001167g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|169; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00010176g0004.1 protein AED:0.05 eAED:0.09 QI:0|0.9|0.90|1|1|1|11|247|549; (*GB) gi|359474705|ref|XP_002263862.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256168 [Vitis vinifera];; (*ITAG) Solyc08g075760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57043909-57049556 transcript_region:SL2.40ch08:57043909..57049556+ functional_description:"CYCLOPS (AHRD V1 ***- A7TUE1_MEDTR)"; NbS00010176g0007.1 protein AED:0.28 eAED:0.28 QI:234|0.4|0.33|0.83|0|0.33|6|0|337; (*GB) gi|225427512|ref|XP_002264344.1| (e_value=2e-95) PREDICTED: uncharacterized protein LOC100266685 [Vitis vinifera];; (*TAIR) AT4G19140.1 (e_value=1e-76) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10469830-10471275 FORWARD LENGTH=303;; (*ITAG) Solyc08g075770.2.1 (e_value=9e-142) genomic_reference:SL2.40ch08 gene_region:57049670-57059466 transcript_region:SL2.40ch08:57049670..57059466- functional_description:"Unknown Protein (AHRD V1)"; NbS00028210g0125.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.94|0.93|0.94|17|0|680 NbS00028210g0124.1 protein AED:0.12 eAED:0.18 QI:60|0.5|0|1|0.5|0.33|3|0|851 NbS00028210g0122.1 protein AED:0.25 eAED:0.25 QI:0|1|0.9|1|1|1|10|643|336 NbS00028210g0127.1 protein AED:0.10 eAED:0.13 QI:0|0.55|0.4|1|0.33|0.5|10|0|411 NbS00003075g0013.1 protein AED:0.12 eAED:0.15 QI:0|0.8|0.83|1|0|0.16|6|355|333; (*GB) gi|224129560|ref|XP_002320616.1| (e_value=8e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT4G28740.1 (e_value=9e-112) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14201051-14202542 FORWARD LENGTH=347;; (*ITAG) Solyc09g063140.2.1 (e_value=3e-167) genomic_reference:SL2.40ch09 gene_region:56789048-56792621 transcript_region:SL2.40ch09:56789048..56792621- functional_description:"Os06g0235500 protein (Fragment) (AHRD V1 *-*- Q0DDB7_ORYSJ)"; NbS00003075g0012.1 protein AED:0.17 eAED:0.17 QI:419|0.94|0.88|1|0.88|0.91|36|397|1540; (*GB) gi|116047943|gb|ABJ53197.1| (e_value=0.0) myosin XI-2 [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G43900.3 (e_value=0.0) | Symbols: MYA2 | myosin 2 | chr5:17657241-17667413 REVERSE LENGTH=1565;; (*ITAG) Solyc09g064200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56914491-56934722 transcript_region:SL2.40ch09:56914491..56934722- go_terms:GO:0042803 functional_description:"Myosin XI-2 (AHRD V1 ***- B0CN59_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00003075g0011.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|143; (*GB) gi|2499967|sp|Q41229.1|PSAEB_NICSY (e_value=1e-59) RecName: Full=Photosystem I reaction center subunit IV B, chloroplastic; Short=PSI-E B; Contains: RecName: Full=Photosystem I reaction center subunit IV B isoform 2; Flags: Precursor;; (*SWP) sp|Q41229|PSAEB_NICSY (e_value=3e-61) Photosystem I reaction center subunit IV B, chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1;; (*TAIR) AT2G20260.1 (e_value=1e-33) | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145;; (*ITAG) Solyc09g063130.2.1 (e_value=1e-50) genomic_reference:SL2.40ch09 gene_region:56787134-56789056 transcript_region:SL2.40ch09:56787134..56789056+ go_terms:GO:0009536,GO:0009538 functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE "; GO:0009536,GO:0009538 NbS00029803g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.88|0.8|1|0.77|0.7|10|0|568; (*GB) gi|559921|emb|CAA56570.1| (e_value=0.0) axi 1 [Nicotiana tabacum];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-80) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G20550.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7115485-7117936 REVERSE LENGTH=564;; (*ITAG) Solyc10g074490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57364037-57368763 transcript_region:SL2.40ch10:57364037..57368763- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00000306g0001.1 protein AED:0.60 eAED:0.62 QI:0|0|0|0.75|1|1|4|0|86; (*GB) gi|255544492|ref|XP_002513307.1| (e_value=8e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G78915.1 (e_value=3e-24) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29667729-29671081 REVERSE LENGTH=385;; (*ITAG) Solyc03g124030.2.1 (e_value=6e-37) genomic_reference:SL2.40ch03 gene_region:64780565-64800802 transcript_region:SL2.40ch03:64780565..64800802- go_terms:GO:0005488 functional_description:"TPR repeat protein (AHRD V1 *--- A0ZBH5_NODSP); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00005669g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|634; (*GB) gi|359477727|ref|XP_003632014.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein L728-like [Vitis vinifera];; (*SWP) sp|Q5UNY4|YL728_MIMIV (e_value=1e-56) Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1;; (*TAIR) AT5G43400.1 (e_value=0.0) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:17426182-17428149 REVERSE LENGTH=655;; (*ITAG) Solyc09g089940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00019492g0003.1 protein AED:0.32 eAED:0.53 QI:0|0|0.5|1|0|0.5|2|294|118 NbS00045548g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|1174867|sp|P46269.2|QCR8_SOLTU (e_value=6e-44) RecName: Full=Cytochrome b-c1 complex subunit 8; AltName: Full=Complex III subunit 8; AltName: Full=Complex III subunit VII; AltName: Full=Ubiquinol-cytochrome c reductase complex 8.2 kDa protein; AltName: Full=Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C;; (*SWP) sp|P46269|QCR8_SOLTU (e_value=2e-45) Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G05370.1 (e_value=7e-42) | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590977-1591869 REVERSE LENGTH=72;; (*ITAG) Solyc06g082680.2.1 (e_value=7e-47) genomic_reference:SL2.40ch06 gene_region:44715736-44718295 transcript_region:SL2.40ch06:44715736..44718295- go_terms:GO:0008121 functional_description:"Cytochrome b-c1 complex subunit 8 (AHRD V1 **** D6BQP2_9ROSI); contains Interpro domain(s) IPR020101 Cytochrome b-c1 complex, subunit 8 "; GO:0008121 NbS00045548g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.5|1|1|1|4|184|210; (*GB) gi|254212161|gb|ACT65738.1| (e_value=5e-124) QM [Nicotiana benthamiana];; (*SWP) sp|P93847|RL10_SOLME (e_value=2e-121) 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=1e-108) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=2e-126) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00020014g0003.1 protein AED:0.26 eAED:0.29 QI:0|0.66|0.75|1|1|1|4|459|410; (*GB) gi|78191448|gb|ABB29945.1| (e_value=0.0) ADP/ATP translocator-like [Solanum tuberosum];; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00041028g0001.1 protein AED:0.22 eAED:0.24 QI:0|0.66|0.5|1|0.33|0.25|4|1308|454; (*GB) gi|359495268|ref|XP_003634944.1| (e_value=5e-107) PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SR00|PP213_ARATH (e_value=2e-20) Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1;; (*TAIR) AT3G04760.1 (e_value=2e-21) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:1303884-1305692 REVERSE LENGTH=602;; (*ITAG) Solyc07g042330.1.1 (e_value=2e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:52813086-52817116 transcript_region:SL2.40ch07:52813086..52817116+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034285g0012.1 protein AED:0.08 eAED:0.08 QI:10|1|1|1|1|1|3|117|276; (*GB) gi|91176169|dbj|BAE93149.1| (e_value=6e-136) methyl jasmonate induced MYB-related transcription factor [Nicotiana tabacum];; (*SWP) sp|P20024|MYB1_MAIZE (e_value=4e-57) Myb-related protein Zm1 OS=Zea mays PE=2 SV=1;; (*TAIR) AT1G06180.1 (e_value=5e-71) | Symbols: ATMYB13, ATMYBLFGN, MYB13 | myb domain protein 13 | chr1:1889510-1891089 FORWARD LENGTH=246;; (*ITAG) Solyc06g083900.2.1 (e_value=1e-90) genomic_reference:SL2.40ch06 gene_region:45486135-45487260 transcript_region:SL2.40ch06:45486135..45487260- go_terms:GO:0005515,GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B2CZJ1_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00034285g0013.1 protein AED:0.27 eAED:0.27 QI:150|0.9|0.81|1|0.9|0.81|11|540|521; (*GB) gi|356520911|ref|XP_003529103.1| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=0.0) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT1G65660.1 (e_value=0.0) | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting factor | chr1:24418295-24421231 REVERSE LENGTH=535;; (*ITAG) Solyc06g083890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45471390-45477059 transcript_region:SL2.40ch06:45471390..45477059- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00018124g0014.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|272|760; (*GB) gi|255582589|ref|XP_002532077.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G41770.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF288) | chr2:17424549-17427042 REVERSE LENGTH=771;; (*ITAG) Solyc01g087600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74313470-74318705 transcript_region:SL2.40ch01:74313470..74318705+ functional_description:"Protein E03H4.4 partially confirmed by transcript evidence (AHRD V1 *-*- O17744_CAEEL)"; NbS00018124g0007.1 protein AED:0.28 eAED:0.28 QI:564|1|1|1|0.61|0.68|19|333|685; (*GB) gi|4160292|emb|CAA77084.1| (e_value=0.0) alpha-N-acetylglucosaminidase [Nicotiana tabacum];; (*SWP) sp|P54802|ANAG_HUMAN (e_value=0.0) Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2;; (*TAIR) AT5G13690.1 (e_value=0.0) | Symbols: CYL1, NAGLU | alpha-N-acetylglucosaminidase family / NAGLU family | chr5:4415808-4420159 FORWARD LENGTH=806;; (*ITAG) Solyc01g087610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74319149-74336096 transcript_region:SL2.40ch01:74319149..74336096- go_terms:GO:0004561 functional_description:"Alpha-N-acetylglucosaminidase (AHRD V1 **** Q9ZR45_TOBAC); contains Interpro domain(s) IPR007781 Alpha-N-acetylglucosaminidase "; GO:0004561 NbS00018124g0008.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|0|1|0|67 NbS00051390g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|225450557|ref|XP_002277523.1| (e_value=4e-95) PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=3e-20) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT3G12410.1 (e_value=2e-23) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc01g100680.1.1 (e_value=2e-113) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82418305-82418913 transcript_region:SL2.40ch01:82418305..82418913+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00010357g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.81|1|0.8|0.81|11|319|386; (*GB) gi|255577151|ref|XP_002529459.1| (e_value=0.0) Cell differentiation protein rcd1, putative [Ricinus communis];; (*SWP) sp|Q6P819|RCD1_XENTR (e_value=1e-131) Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1;; (*TAIR) AT3G20800.1 (e_value=0.0) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc12g014400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; NbS00010357g0007.1 protein AED:0.25 eAED:0.25 QI:124|1|1|1|1|1|7|370|243; (*GB) gi|147861921|emb|CAN80917.1| (e_value=7e-143) hypothetical protein VITISV_024616 [Vitis vinifera];; (*SWP) sp|O94903|PROSC_HUMAN (e_value=6e-65) Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1;; (*TAIR) AT4G26860.1 (e_value=6e-135) | Symbols: | Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr4:13503291-13504693 REVERSE LENGTH=244;; (*ITAG) Solyc10g006240.2.1 (e_value=2e-166) genomic_reference:SL2.40ch10 gene_region:925645-930022 transcript_region:SL2.40ch10:925645..930022- go_terms:GO:0042802,GO:0030170 functional_description:"Proline synthetase co-transcribed bacterial homolog protein (AHRD V1 **-- C1BF86_ONCMY); contains Interpro domain(s) IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "; GO:0042802,GO:0030170 NbS00010357g0011.1 protein AED:0.22 eAED:0.25 QI:41|0.6|0.33|1|0.4|0.5|6|204|326; (*GB) gi|255577153|ref|XP_002529460.1| (e_value=3e-92) ribonuclease III, putative [Ricinus communis];; (*SWP) sp|Q9LTQ0|RTL2_ARATH (e_value=4e-70) Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1;; (*TAIR) AT3G20420.1 (e_value=3e-71) | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 | chr3:7119371-7120895 REVERSE LENGTH=391;; (*ITAG) Solyc12g014410.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5352607-5354889 transcript_region:SL2.40ch12:5352607..5354889+ go_terms:GO:0004525 functional_description:"Ribonuclease III family protein (AHRD V1 *-** D7MAI2_ARALY); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0004525 NbS00037721g0005.1 protein AED:0.23 eAED:0.23 QI:83|1|0.75|1|0|0.25|4|0|517; (*GB) gi|225458045|ref|XP_002277913.1| (e_value=5e-127) PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|Q56XU4|C3H6_ARATH (e_value=3e-81) Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1;; (*TAIR) AT1G19860.1 (e_value=2e-82) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413;; (*ITAG) Solyc12g089260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62807939-62816214 transcript_region:SL2.40ch12:62807939..62816214+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 6 (AHRD V1 ***- C3H6_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00021602g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|326558833|gb|ADZ95598.1| (e_value=4e-55) C-repeat binding facor [Fraxinus americana];; (*SWP) sp|Q9LN86|DRE1F_ARATH (e_value=1e-42) Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1;; (*TAIR) AT1G12610.1 (e_value=1e-43) | Symbols: DDF1 | Integrase-type DNA-binding superfamily protein | chr1:4290205-4290834 REVERSE LENGTH=209;; (*ITAG) Solyc08g007820.1.1 (e_value=6e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2326801-2327535 transcript_region:SL2.40ch08:2326801..2327535- go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 *-** ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00021602g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|147799024|emb|CAN72567.1| (e_value=9e-16) hypothetical protein VITISV_044177 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=4e-15) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc06g060030.1.1 (e_value=2e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34348153-34350204 transcript_region:SL2.40ch06:34348153..34350204- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-BR Gag-Pol polyprotein (AHRD V1 *-*- YB12B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00038948g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|388519441|gb|AFK47782.1| (e_value=2e-77) unknown [Lotus japonicus];; (*TAIR) AT5G64010.1 (e_value=1e-60) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25618810-25620179 REVERSE LENGTH=236;; (*ITAG) Solyc01g105570.2.1 (e_value=3e-151) genomic_reference:SL2.40ch01 gene_region:85464806-85470238 transcript_region:SL2.40ch01:85464806..85470238- functional_description:"Genomic DNA chromosome 5 P1 clone MBM17 (AHRD V1 ***- Q9LVN4_ARATH)"; NbS00025808g0010.1 protein AED:0.02 eAED:0.02 QI:182|1|1|1|1|1|2|202|218; (*GB) gi|623584|gb|AAA74116.1| (e_value=3e-152) putative, partial [Nicotiana tabacum];; (*SWP) sp|Q9SIP0|RAA5D_ARATH (e_value=5e-129) Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2 SV=1;; (*TAIR) AT1G05810.1 (e_value=9e-130) | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E | RAB GTPase homolog A5E | chr1:1748314-1749350 FORWARD LENGTH=261;; (*ITAG) Solyc09g098170.2.1 (e_value=8e-154) genomic_reference:SL2.40ch09 gene_region:67317558-67321196 transcript_region:SL2.40ch09:67317558..67321196+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00025808g0012.1 protein AED:0.02 eAED:0.02 QI:3|1|0|1|1|1|2|0|194; (*GB) gi|350537409|ref|NP_001234292.1| (e_value=7e-130) pirin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=2e-131) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G43120.1 (e_value=4e-89) | Symbols: | RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321;; (*ITAG) Solyc09g098160.2.1 (e_value=1e-132) genomic_reference:SL2.40ch09 gene_region:67314368-67316427 transcript_region:SL2.40ch09:67314368..67316427+ go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00025808g0015.1 protein AED:0.05 eAED:0.05 QI:75|0.66|0.71|1|0.33|0.28|7|324|296; (*GB) gi|225433709|ref|XP_002268298.1| (e_value=4e-149) PREDICTED: pirin-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=2e-141) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G43120.1 (e_value=1e-122) | Symbols: | RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321;; (*ITAG) Solyc09g098180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67322241-67325283 transcript_region:SL2.40ch09:67322241..67325283- go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00025808g0014.1 protein AED:0.15 eAED:0.20 QI:0|0|0|1|1|0.5|2|0|91 NbS00030597g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0|0.75|0.33|0.25|4|0|462; (*GB) gi|255586505|ref|XP_002533893.1| (e_value=0.0) peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=4e-105) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=3e-106) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc09g014230.1.1 (e_value=9e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5719532-5722365 transcript_region:SL2.40ch09:5719532..5722365- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00008858g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|100; (*GB) gi|356543082|ref|XP_003539992.1| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100806134 [Glycine max];; (*TAIR) AT2G42610.2 (e_value=2e-28) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc12g014260.1.1 (e_value=6e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5085293-5085910 transcript_region:SL2.40ch12:5085293..5085910- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00008858g0005.1 protein AED:0.21 eAED:0.21 QI:84|0.75|0.4|1|1|1|5|360|143; (*GB) gi|147792890|emb|CAN62222.1| (e_value=2e-84) hypothetical protein VITISV_022532 [Vitis vinifera];; (*SWP) sp|Q5F383|SPP2B_CHICK (e_value=5e-23) Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1;; (*TAIR) AT1G63690.1 (e_value=5e-80) | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540;; (*ITAG) Solyc08g081180.2.1 (e_value=3e-94) genomic_reference:SL2.40ch08 gene_region:61415165-61423265 transcript_region:SL2.40ch08:61415165..61423265+ go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00035398g0005.1 protein AED:0.24 eAED:0.24 QI:0|0|0.33|1|0.5|0.33|3|0|217; (*GB) gi|125887|sp|P13447.1|LAT52_SOLLC (e_value=4e-58) RecName: Full=Anther-specific protein LAT52; Flags: Precursor;; (*SWP) sp|P13447|LAT52_SOLLC (e_value=1e-59) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=4e-21) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc07g062560.2.1 (e_value=5e-74) genomic_reference:SL2.40ch07 gene_region:62468785-62469715 transcript_region:SL2.40ch07:62468785..62469715+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00035398g0008.1 protein AED:0.59 eAED:0.66 QI:0|0.33|0|0.75|0.66|0.75|4|0|70; (*GB) gi|18412149|ref|NP_565192.1| (e_value=4e-44) ubiquitin-conjugating enzyme E2 35 [Arabidopsis thaliana];; (*SWP) sp|Q94A97|UBC35_ARATH (e_value=1e-45) Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1;; (*TAIR) AT1G78870.2 (e_value=1e-46) | Symbols: UBC35, UBC13A | ubiquitin-conjugating enzyme 35 | chr1:29650589-29652203 FORWARD LENGTH=153;; (*ITAG) Solyc07g062570.2.1 (e_value=1e-46) genomic_reference:SL2.40ch07 gene_region:62472541-62478080 transcript_region:SL2.40ch07:62472541..62478080+ go_terms:GO:0043130 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 **** B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043130 NbS00001485g0006.1 protein AED:0.03 eAED:0.03 QI:13|0.87|0.94|0.94|0.68|0.76|17|512|1568; (*GB) gi|147790410|emb|CAN63315.1| (e_value=0.0) hypothetical protein VITISV_021056 [Vitis vinifera];; (*TAIR) AT3G17360.1 (e_value=4e-127) | Symbols: POK1 | phragmoplast orienting kinesin 1 | chr3:5936108-5946205 FORWARD LENGTH=2066;; (*ITAG) Solyc01g057310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:53375259-53382746 transcript_region:SL2.40ch01:53375259..53382746- functional_description:"Kinesin (Centromeric protein)-like protein (AHRD V1 *-*- Q9LJ60_ARATH)"; NbS00006406g0117.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|2|0|336 NbS00006406g0116.1 protein AED:0.33 eAED:0.36 QI:0|0.66|0.25|1|0.33|0.25|4|0|238 NbS00006406g0118.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|92 NbS00006406g0115.1 protein AED:0.25 eAED:0.25 QI:11|1|0.8|1|1|1|5|0|508 NbS00006406g0114.1 protein AED:0.29 eAED:0.29 QI:298|1|1|1|0.8|0.90|11|290|347 NbS00006406g0119.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|167 NbS00010294g0012.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|472; (*GB) gi|356506381|ref|XP_003521962.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max];; (*SWP) sp|Q84R10|PME36_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2;; (*TAIR) AT3G60730.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:22444955-22447226 FORWARD LENGTH=519;; (*ITAG) Solyc01g091060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76546392-76549258 transcript_region:SL2.40ch01:76546392..76549258+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD91_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00010294g0003.1 protein AED:0.31 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|332322089|emb|CCA65980.1| (e_value=1e-30) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc05g021350.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00010294g0002.1 protein AED:0.60 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|120 NbS00010294g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|0|0|3|0|548; (*GB) gi|225453983|ref|XP_002280446.1| (e_value=0.0) PREDICTED: pectinesterase 2 [Vitis vinifera];; (*SWP) sp|O04887|PME2_CITSI (e_value=0.0) Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1;; (*TAIR) AT2G45220.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc01g091050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76528228-76531144 transcript_region:SL2.40ch01:76528228..76531144- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD90_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00046571g0007.1 protein AED:0.37 eAED:0.38 QI:0|0.64|0.53|0.86|0.64|0.8|15|0|549; (*GB) gi|225446639|ref|XP_002281125.1| (e_value=1e-80) PREDICTED: 50S ribosomal protein L1-like [Vitis vinifera];; (*SWP) sp|A1B012|RL1_PARDP (e_value=9e-38) 50S ribosomal protein L1 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplA PE=3 SV=1;; (*TAIR) AT2G42710.1 (e_value=3e-74) | Symbols: | Ribosomal protein L1p/L10e family | chr2:17782352-17784830 FORWARD LENGTH=415;; (*ITAG) Solyc12g013990.1.1 (e_value=3e-168) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:4825557-4835358 transcript_region:SL2.40ch12:4825557..4835358+ go_terms:GO:0006396,GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L1 (AHRD V1 ***- B6TB66_MAIZE); contains Interpro domain(s) IPR005878 Ribosomal protein L1, bacterial-type "; GO:0006396,GO:0005840,GO:0015934 NbS00046571g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|221; (*GB) gi|225444385|ref|XP_002267815.1| (e_value=3e-75) PREDICTED: probable serine/threonine-protein kinase WNK4 [Vitis vinifera];; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=1e-69) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT3G18750.3 (e_value=3e-70) | Symbols: WNK6 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567;; (*ITAG) Solyc10g009060.1.1 (e_value=1e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005126g0017.1 protein AED:0.18 eAED:0.18 QI:160|1|1|1|0.91|0.92|13|1390|721; (*GB) gi|359487802|ref|XP_002284554.2| (e_value=0.0) PREDICTED: probable Xaa-Pro aminopeptidase P-like [Vitis vinifera];; (*SWP) sp|B0DZL3|AMPP1_LACBS (e_value=0.0) Probable Xaa-Pro aminopeptidase P OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=AMPP PE=3 SV=1;; (*TAIR) AT3G05350.1 (e_value=0.0) | Symbols: | Metallopeptidase M24 family protein | chr3:1527103-1533843 REVERSE LENGTH=710;; (*ITAG) Solyc01g099110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81192109-81202257 transcript_region:SL2.40ch01:81192109..81202257- go_terms:GO:0016787,GO:0009987 functional_description:"Xaa-pro aminopeptidase (AHRD V1 **-- A1DF27_NEOFI); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0016787,GO:0009987 NbS00005126g0018.1 protein AED:0.19 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|0|259; (*GB) gi|225450919|ref|XP_002284549.1| (e_value=1e-44) PREDICTED: protein AUXIN RESPONSE 4 [Vitis vinifera];; (*SWP) sp|Q9FZ33|AXR4_ARATH (e_value=3e-38) Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1;; (*TAIR) AT1G54990.1 (e_value=2e-39) | Symbols: AXR4, RGR, RGR1 | alpha/beta-Hydrolases superfamily protein | chr1:20511565-20513489 FORWARD LENGTH=473;; (*ITAG) Solyc01g099120.2.1 (e_value=1e-91) genomic_reference:SL2.40ch01 gene_region:81202877-81206378 transcript_region:SL2.40ch01:81202877..81206378+ functional_description:"Protein AUXIN RESPONSE 4 (AHRD V1 ***- AXR4_ARATH)"; NbS00005126g0002.1 protein AED:0.30 eAED:0.30 QI:386|1|1|1|0.84|0.81|27|1128|696; (*GB) gi|225432604|ref|XP_002277936.1| (e_value=0.0) PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Vitis vinifera];; (*SWP) sp|Q8LKS5|LACS7_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2;; (*TAIR) AT5G27600.1 (e_value=0.0) | Symbols: LACS7, ATLACS7 | long-chain acyl-CoA synthetase 7 | chr5:9742616-9746795 FORWARD LENGTH=700;; (*ITAG) Solyc01g099100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81175913-81191684 transcript_region:SL2.40ch01:81175913..81191684+ go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid coa ligase (AHRD V1 ***- Q16WF9_AEDAE); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00034614g0014.1 protein AED:0.05 eAED:0.08 QI:0|0.66|0.5|0.75|1|1|4|0|282; (*GB) gi|147843547|emb|CAN79461.1| (e_value=2e-98) hypothetical protein VITISV_042494 [Vitis vinifera];; (*SWP) sp|Q9LY17|PME50_ARATH (e_value=3e-48) Probable pectinesterase 50 OS=Arabidopsis thaliana GN=PME50 PE=2 SV=1;; (*TAIR) AT5G07430.1 (e_value=2e-49) | Symbols: | Pectin lyase-like superfamily protein | chr5:2352549-2354069 FORWARD LENGTH=361;; (*ITAG) Solyc01g079180.2.1 (e_value=7e-130) genomic_reference:SL2.40ch01 gene_region:70787714-70790317 transcript_region:SL2.40ch01:70787714..70790317+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8RVT4_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00034614g0017.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|4|0|343; (*GB) gi|321268091|gb|ADW78848.1| (e_value=0.0) galactinol synthase [Solanum tuberosum];; (*SWP) sp|Q5UNW1|YR707_MIMIV (e_value=3e-13) Uncharacterized protein R707 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R707 PE=4 SV=1;; (*TAIR) AT2G47180.1 (e_value=0.0) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc01g079170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70769343-70771856 transcript_region:SL2.40ch01:70769343..70771856- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- D6QSF5_BRANA); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00034614g0012.1 protein AED:0.07 eAED:0.07 QI:5|1|1|1|0.75|0.6|5|74|371; (*GB) gi|224064667|ref|XP_002301534.1| (e_value=1e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|O80522|GDL2_ARATH (e_value=4e-126) GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1;; (*TAIR) AT1G09390.1 (e_value=3e-127) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:3031264-3033415 FORWARD LENGTH=370;; (*ITAG) Solyc01g079160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70763564-70767349 transcript_region:SL2.40ch01:70763564..70767349- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g09390 (AHRD V1 ***- GDL2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00004782g0015.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.33|1|1|3|0|575; (*GB) gi|225438073|ref|XP_002272315.1| (e_value=2e-163) PREDICTED: piriformospora indica-insensitive protein 2 [Vitis vinifera];; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=1e-54) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT4G28560.1 (e_value=2e-134) | Symbols: RIC7 | ROP-interactive CRIB motif-containing protein 7 | chr4:14116015-14117367 REVERSE LENGTH=450;; (*ITAG) Solyc09g072630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60754393-60756538 transcript_region:SL2.40ch09:60754393..60756538+ go_terms:GO:0005515,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0004675 NbS00004782g0021.1 protein AED:0.31 eAED:0.31 QI:105|0.58|0.53|0.92|0.66|0.76|13|0|451; (*GB) gi|83284007|gb|ABC01911.1| (e_value=0.0) succinyl CoA ligase beta subunit-like protein [Solanum tuberosum];; (*SWP) sp|Q84LB6|SUCB_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G20420.1 (e_value=0.0) | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421;; (*ITAG) Solyc06g083790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45398741-45407021 transcript_region:SL2.40ch06:45398741..45407021+ go_terms:GO:0004775 functional_description:"Succinyl-CoA ligase (AHRD V1 **** B4D5D9_9BACT); contains Interpro domain(s) IPR005809 Succinyl-CoA synthetase, beta subunit "; GO:0004775 NbS00004782g0024.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|1|0.25|0.2|5|0|721; (*GB) gi|255577920|ref|XP_002529832.1| (e_value=0.0) electron carrier, putative [Ricinus communis];; (*SWP) sp|B5WWZ9|FAO2_LOTJA (e_value=0.0) Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1;; (*TAIR) AT4G28570.1 (e_value=0.0) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:14119548-14121923 FORWARD LENGTH=748;; (*ITAG) Solyc09g072610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60713774-60717099 transcript_region:SL2.40ch09:60713774..60717099- go_terms:GO:0016614,GO:0050660,GO:0055114 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0016614,GO:0050660,GO:0055114 NbS00004782g0017.1 protein AED:0.13 eAED:0.13 QI:3|0.8|0.5|1|1|0.83|6|1078|744; (*GB) gi|255571250|ref|XP_002526575.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT4G28600.1 (e_value=0.0) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc09g072650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60764038-60769179 transcript_region:SL2.40ch09:60764038..60769179+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein MPCBP (AHRD V1 **-* B6U2D5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00004782g0026.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.75|0|0.5|4|0|185; (*GB) gi|296083680|emb|CBI23669.3| (e_value=2e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G20430.1 (e_value=1e-13) | Symbols: RIC6 | ROP-interactive CRIB motif-containing protein 6 | chr2:8808667-8809781 REVERSE LENGTH=212;; (*ITAG) Solyc09g072640.2.1 (e_value=6e-25) genomic_reference:SL2.40ch09 gene_region:60756145-60757550 transcript_region:SL2.40ch09:60756145..60757550- functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00004782g0020.1 protein AED:0.25 eAED:0.26 QI:567|0.6|0.54|0.90|0.8|0.81|11|0|260; (*GB) gi|224082860|ref|XP_002306868.1| (e_value=4e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=2e-31) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT4G28550.1 (e_value=7e-108) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:14111204-14113468 FORWARD LENGTH=424;; (*ITAG) Solyc09g066420.2.1 (e_value=2e-145) genomic_reference:SL2.40ch09 gene_region:60429072-60441494 transcript_region:SL2.40ch09:60429072..60441494- go_terms:GO:0051103,GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q7TPU5_MOUSE); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0051103,GO:0005622 NbS00004782g0025.1 protein AED:0.26 eAED:0.26 QI:0|0.85|0.87|1|0.57|0.62|8|591|428; (*GB) gi|29470177|gb|AAO74500.1| (e_value=0.0) phytochelatin synthase 1 [Nicotiana tabacum];; (*SWP) sp|Q2TSC7|PCS1_LOTJA (e_value=0.0) Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1;; (*TAIR) AT5G44070.1 (e_value=3e-170) | Symbols: CAD1, ARA8, ATPCS1, PCS1 | phytochelatin synthase 1 (PCS1) | chr5:17734876-17737672 FORWARD LENGTH=485;; (*ITAG) Solyc09g072620.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60741422-60747286 transcript_region:SL2.40ch09:60741422..60747286- go_terms:GO:0016756 functional_description:"Phytochelatin synthase (AHRD V1 ***- Q84JR4_SOLTU); contains Interpro domain(s) IPR015407 Phytochelatin synthase, C-terminal "; GO:0016756 NbS00032117g0002.1 protein AED:0.33 eAED:0.33 QI:159|0.61|0.57|1|1|1|19|0|846; (*GB) gi|297735616|emb|CBI18110.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84K71|MATE2_ARATH (e_value=3e-156) MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1;; (*TAIR) AT5G01620.2 (e_value=1e-173) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 35 | chr5:232882-234821 FORWARD LENGTH=449;; (*ITAG) Solyc10g085320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63867300-63871204 transcript_region:SL2.40ch10:63867300..63871204+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00032117g0012.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|1|1|2|0|112; (*GB) gi|225439552|ref|XP_002264120.1| (e_value=1e-56) PREDICTED: macrophage migration inhibitory factor homolog isoform 1 [Vitis vinifera];; (*SWP) sp|P81748|MIFH_TRITR (e_value=2e-14) Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2;; (*TAIR) AT3G51660.1 (e_value=7e-51) | Symbols: | Tautomerase/MIF superfamily protein | chr3:19164229-19165076 REVERSE LENGTH=112;; (*ITAG) Solyc10g085350.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63887618-63888882 transcript_region:SL2.40ch10:63887618..63888882+ go_terms:GO:0004167 functional_description:"Macrophage migration inhibitory factor family protein (AHRD V1 ***- D7LTX0_ARALY); contains Interpro domain(s) IPR001398 Macrophage migration inhibitory factor "; GO:0004167 NbS00032117g0007.1 protein AED:0.28 eAED:0.28 QI:10|0.25|0|0.88|1|0.88|9|0|452; (*GB) gi|225439558|ref|XP_002264808.1| (e_value=5e-86) PREDICTED: uncharacterized protein LOC100267149 [Vitis vinifera];; (*SWP) sp|P37707|B2_DAUCA (e_value=9e-30) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G01660.1 (e_value=2e-63) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc10g076340.1.1 (e_value=4e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58609555-58617793 transcript_region:SL2.40ch10:58609555..58617793+ functional_description:"Kelch-like protein (AHRD V1 *-*- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00017126g0010.1 protein AED:0.39 eAED:0.40 QI:0|1|0.66|1|1|1|3|0|175; (*GB) gi|224067970|ref|XP_002302624.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84MC7|PYL9_ARATH (e_value=9e-94) Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1;; (*TAIR) AT1G01360.1 (e_value=7e-95) | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187;; (*ITAG) Solyc01g095700.2.1 (e_value=5e-117) genomic_reference:SL2.40ch01 gene_region:78645220-78647649 transcript_region:SL2.40ch01:78645220..78647649- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00017126g0002.1 protein AED:0.16 eAED:0.17 QI:0|0.25|0|1|1|1|5|0|811; (*GB) gi|225454494|ref|XP_002276948.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SV26|PP297_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2;; (*TAIR) AT4G01030.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:448336-450642 REVERSE LENGTH=768;; (*ITAG) Solyc01g095690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78640121-78643091 transcript_region:SL2.40ch01:78640121..78643091+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00017126g0012.1 protein AED:0.09 eAED:0.68 QI:0|0|0.25|1|0|0|4|0|424; (*GB) gi|147856413|emb|CAN82500.1| (e_value=5e-86) hypothetical protein VITISV_004914 [Vitis vinifera];; (*TAIR) AT4G01037.1 (e_value=1e-76) | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:451444-453030 REVERSE LENGTH=528;; (*ITAG) Solyc01g095680.2.1 (e_value=1e-62) genomic_reference:SL2.40ch01 gene_region:78634503-78636857 transcript_region:SL2.40ch01:78634503..78636857+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031465g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.33|0.83|0.6|0.83|6|0|365; (*GB) gi|148595734|emb|CAM32008.1| (e_value=4e-98) YA1 [Petunia x hybrida];; (*SWP) sp|Q9M9X4|NFYA2_ARATH (e_value=1e-40) Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1;; (*TAIR) AT3G05690.1 (e_value=9e-42) | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear factor Y, subunit A2 | chr3:1676922-1678324 REVERSE LENGTH=295;; (*ITAG) Solyc01g006930.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:1506539-1511917 transcript_region:SL2.40ch01:1506539..1511917+ go_terms:GO:0003700,GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-2 (AHRD V1 **** B6SM21_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700,GO:0016566 NbS00006375g0003.1 protein AED:0.00 eAED:0.00 QI:197|1|1|1|0.5|0.66|3|190|148; (*GB) gi|225443610|ref|XP_002279326.1| (e_value=2e-28) PREDICTED: uncharacterized protein LOC100241906 [Vitis vinifera];; (*ITAG) Solyc02g077720.2.1 (e_value=1e-58) genomic_reference:SL2.40ch02 gene_region:37183372-37184656 transcript_region:SL2.40ch02:37183372..37184656+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059562g0003.1 protein AED:0.23 eAED:0.26 QI:0|1|0.66|1|1|1|6|0|298; (*GB) gi|325516266|gb|ADZ24711.1| (e_value=5e-164) phytol kinase [Solanum pennellii];; (*SWP) sp|Q2N2K0|PHYK3_SOYBN (e_value=2e-120) Probable phytol kinase 3, chloroplastic OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G58560.1 (e_value=7e-120) | Symbols: | Phosphatidate cytidylyltransferase family protein | chr5:23670513-23672570 FORWARD LENGTH=307;; (*ITAG) Solyc09g018510.2.1 (e_value=6e-166) genomic_reference:SL2.40ch09 gene_region:15118957-15122657 transcript_region:SL2.40ch09:15118957..15122657+ go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase family protein expressed (AHRD V1 **-* Q2QYV3_ORYSJ); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00055868g0013.1 protein AED:0.18 eAED:0.22 QI:13|0.5|0|1|0|0|3|0|522; (*GB) gi|225425082|ref|XP_002273118.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At3g19850 [Vitis vinifera];; (*SWP) sp|Q9LT24|Y3985_ARATH (e_value=3e-151) BTB/POZ domain-containing protein At3g19850 OS=Arabidopsis thaliana GN=At3g19850 PE=2 SV=1;; (*TAIR) AT3G19850.1 (e_value=2e-152) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:6898383-6901157 REVERSE LENGTH=554;; (*ITAG) Solyc11g040040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28367024-28370692 transcript_region:SL2.40ch11:28367024..28370692- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00055868g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|7|284|391; (*GB) gi|225425084|ref|XP_002273586.1| (e_value=5e-134) PREDICTED: uncharacterized protein LOC100249627 [Vitis vinifera];; (*SWP) sp|Q92804|RBP56_HUMAN (e_value=3e-25) TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1;; (*TAIR) AT1G50300.1 (e_value=1e-109) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372;; (*ITAG) Solyc11g040050.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28386181-28389979 transcript_region:SL2.40ch11:28386181..28389979- go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B8C201_THAPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003723 NbS00055868g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.72|0.83|12|435|562; (*GB) gi|225425069|ref|XP_002270763.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247878 [Vitis vinifera];; (*SWP) sp|Q58FY4|PUB63_ARATH (e_value=8e-39) U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1;; (*TAIR) AT3G19895.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:6917530-6921211 REVERSE LENGTH=554;; (*ITAG) Solyc04g009340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2776459-2785611 transcript_region:SL2.40ch04:2776459..2785611- functional_description:"U-box domain-containing protein 62 (AHRD V1 *-*- PUB62_ARATH)"; NbS00007761g0006.1 protein AED:0.16 eAED:0.16 QI:145|1|1|1|1|1|3|21|380; (*GB) gi|225450759|ref|XP_002279364.1| (e_value=8e-28) PREDICTED: uncharacterized protein LOC100247751 [Vitis vinifera];; (*TAIR) AT5G27690.1 (e_value=2e-26) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:9803796-9805036 FORWARD LENGTH=352;; (*ITAG) Solyc01g099600.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:81551049-81552759 transcript_region:SL2.40ch01:81551049..81552759- go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- B6TJ24_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00016902g0104.1 protein AED:0.05 eAED:0.05 QI:53|1|1|1|1|1|2|169|491 NbS00016902g0201.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|192 NbS00016902g0212.1 protein AED:0.03 eAED:0.03 QI:556|1|1|1|1|1|4|2327|581 NbS00016902g0213.1 protein AED:0.04 eAED:0.04 QI:70|1|1|1|0.5|0.33|3|269|284 NbS00025501g0002.1 protein AED:0.39 eAED:0.39 QI:0|0.37|0.22|1|1|1|9|0|284; (*GB) gi|224143146|ref|XP_002324860.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32330.3 (e_value=5e-20) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr4:15609801-15611867 FORWARD LENGTH=437;; (*ITAG) Solyc08g059800.2.1 (e_value=2e-85) genomic_reference:SL2.40ch08 gene_region:42713283-42722705 transcript_region:SL2.40ch08:42713283..42722705+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00059819g0001.1 protein AED:0.28 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=1e-17) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g044710.1.1 (e_value=6e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00014772g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0.5|0.66|3|210|440; (*GB) gi|119391218|dbj|BAF41989.1| (e_value=6e-163) CUP-SHAPED COTYLEDON3 [Petunia x hybrida];; (*SWP) sp|Q9S851|NAC31_ARATH (e_value=4e-96) Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1;; (*TAIR) AT1G76420.1 (e_value=3e-97) | Symbols: CUC3, NAC368, ANAC031 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:28672029-28673835 REVERSE LENGTH=334;; (*ITAG) Solyc07g062840.2.1 (e_value=4e-80) genomic_reference:SL2.40ch07 gene_region:62708889-62711033 transcript_region:SL2.40ch07:62708889..62711033+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1D6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00009179g0004.1 protein AED:0.30 eAED:0.50 QI:0|0|0|0.75|0|0|4|0|105 NbS00028783g0009.1 protein AED:0.17 eAED:0.17 QI:3|0.6|0.5|1|0.6|0.33|6|0|806; (*GB) gi|359491838|ref|XP_002272300.2| (e_value=0.0) PREDICTED: protein NLP4-like [Vitis vinifera];; (*SWP) sp|Q9LE38|NLP4_ARATH (e_value=0.0) Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1;; (*TAIR) AT1G20640.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr1:7155201-7157986 FORWARD LENGTH=844;; (*ITAG) Solyc04g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63713023-63717884 transcript_region:SL2.40ch04:63713023..63717884+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DME9_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00028783g0008.1 protein AED:0.15 eAED:0.15 QI:219|1|1|1|0.76|0.92|39|352|1295; (*GB) gi|359491908|ref|XP_002272383.2| (e_value=0.0) PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera];; (*SWP) sp|P56941|NPC1_PIG (e_value=0.0) Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1;; (*TAIR) AT4G38350.1 (e_value=0.0) | Symbols: | Patched family protein | chr4:17958324-17966846 REVERSE LENGTH=1273;; (*ITAG) Solyc04g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63718268-63734726 transcript_region:SL2.40ch04:63718268..63734726- go_terms:GO:0005515 functional_description:"Niemann-Pick C1 protein (AHRD V1 **-- C5FQM2_NANOT); contains Interpro domain(s) IPR004765 Niemann-Pick C type protein "; GO:0005515 NbS00031444g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|0.75|1|1|4|0|416; (*GB) gi|317106607|dbj|BAJ53114.1| (e_value=0.0) JHL07K02.4 [Jatropha curcas];; (*SWP) sp|Q940Q8|IX10L_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1;; (*TAIR) AT5G61840.1 (e_value=0.0) | Symbols: GUT1 | Exostosin family protein | chr5:24839365-24841703 REVERSE LENGTH=415;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00031444g0009.1 protein AED:0.18 eAED:0.18 QI:252|0.87|0.88|1|0.75|0.77|9|0|255; (*GB) gi|255540025|ref|XP_002511077.1| (e_value=2e-142) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51020.1 (e_value=1e-130) | Symbols: CRL | crumpled leaf | chr5:20745560-20747165 REVERSE LENGTH=269;; (*ITAG) Solyc06g068760.2.1 (e_value=9e-166) genomic_reference:SL2.40ch06 gene_region:39005202-39008697 transcript_region:SL2.40ch06:39005202..39008697+ functional_description:"CRUMPLED LEAF (AHRD V1 ***- Q9FI46_ARATH); contains Interpro domain(s) IPR010404 Protein of unknown function DUF1001 "; NbS00013861g0010.1 protein AED:0.17 eAED:0.21 QI:156|0.2|0.33|0.83|0.4|0.5|6|0|310; (*GB) gi|147789500|emb|CAN69587.1| (e_value=2e-135) hypothetical protein VITISV_019797 [Vitis vinifera];; (*SWP) sp|Q9UBZ4|APEX2_HUMAN (e_value=6e-33) DNA-(apurinic or apyrimidinic site) lyase 2 OS=Homo sapiens GN=APEX2 PE=1 SV=1;; (*TAIR) AT4G36050.2 (e_value=3e-112) | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr4:17052323-17055044 REVERSE LENGTH=610;; (*ITAG) Solyc03g033530.2.1 (e_value=9e-161) genomic_reference:SL2.40ch03 gene_region:9348056-9354762 transcript_region:SL2.40ch03:9348056..9354762- go_terms:GO:0004528,GO:0008311 functional_description:"DNA lyase (AHRD V1 **** A4URR7_COCIM); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth "; GO:0004528,GO:0008311 NbS00013861g0016.1 protein AED:0.21 eAED:0.21 QI:765|1|1|1|0.91|0.84|13|540|425; (*GB) gi|350538611|ref|NP_001234607.1| (e_value=0.0) calcium-dependent protein kinase [Solanum lycopersicum];; (*SWP) sp|Q7XJR9|CDPKG_ARATH (e_value=0.0) Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1;; (*TAIR) AT2G17890.1 (e_value=0.0) | Symbols: CPK16 | calcium-dependent protein kinase 16 | chr2:7769885-7772627 REVERSE LENGTH=571;; (*ITAG) Solyc03g033540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9356208-9363698 transcript_region:SL2.40ch03:9356208..9363698- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** C6KGT3_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00013861g0011.1 protein AED:0.54 eAED:0.95 QI:0|0|0|0.66|0|0|3|0|327; (*GB) gi|147789500|emb|CAN69587.1| (e_value=2e-52) hypothetical protein VITISV_019797 [Vitis vinifera];; (*TAIR) AT4G36050.2 (e_value=3e-34) | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr4:17052323-17055044 REVERSE LENGTH=610;; (*ITAG) Solyc03g033530.2.1 (e_value=7e-121) genomic_reference:SL2.40ch03 gene_region:9348056-9354762 transcript_region:SL2.40ch03:9348056..9354762- go_terms:GO:0004528,GO:0008311 functional_description:"DNA lyase (AHRD V1 **** A4URR7_COCIM); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth "; GO:0004528,GO:0008311 NbS00013861g0104.1 protein AED:0.54 eAED:0.54 QI:0|0|0|1|0|0|2|0|62 NbS00001118g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|0|271; (*GB) gi|33301670|sp|Q9ZT29.1|SC5D_TOBAC (e_value=0.0) RecName: Full=Delta(7)-sterol-C5(6)-desaturase; AltName: Full=Delta(7)-sterol-C5-desaturase; AltName: Full=Delta-7-C-5 sterol desaturase;; (*SWP) sp|Q9ZT29|SC5D_TOBAC (e_value=0.0) Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G02580.1 (e_value=2e-161) | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:547048-548615 FORWARD LENGTH=281;; (*ITAG) Solyc02g086180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43503863-43506392 transcript_region:SL2.40ch02:43503863..43506392+ go_terms:GO:0000248 functional_description:"Sterol C-5 desaturase (AHRD V1 **** D7FW86_ECTSI); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000248 NbS00026898g0003.1 protein AED:0.01 eAED:0.01 QI:40|1|1|1|1|1|2|321|178; (*GB) gi|224071607|ref|XP_002303538.1| (e_value=3e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27830.1 (e_value=5e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc06g060560.2.1 (e_value=3e-48) genomic_reference:SL2.40ch06 gene_region:34955531-34956677 transcript_region:SL2.40ch06:34955531..34956677- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *--- D7ME07_ARALY)"; NbS00032236g0006.1 protein AED:0.17 eAED:0.19 QI:55|0.6|0.5|0.87|0.73|0.68|16|0|529; (*GB) gi|380042380|gb|AFD33354.1| (e_value=0.0) acyl-activating enzyme 10 [Cannabis sativa];; (*SWP) sp|Q8H151|AAE13_ARATH (e_value=0.0) Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1;; (*TAIR) AT3G16170.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:5476490-5480128 FORWARD LENGTH=544;; (*ITAG) Solyc12g044300.1.1 (e_value=2e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44635849-44639534 transcript_region:SL2.40ch12:44635849..44639534+ go_terms:GO:0016878 functional_description:"Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II (AHRD V1 **** C7MWS2_SACVD); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016878 NbS00032236g0008.1 protein AED:0.08 eAED:0.16 QI:0|0|0|1|0|0|2|0|314; (*GB) gi|224059108|ref|XP_002299719.1| (e_value=2e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=1e-121) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=1e-122) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g044310.1.1 (e_value=9e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44643352-44647348 transcript_region:SL2.40ch12:44643352..44647348- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00019745g0012.1 protein AED:0.01 eAED:0.01 QI:1064|1|1|1|1|1|2|323|679; (*GB) gi|359473670|ref|XP_003631342.1| (e_value=0.0) PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630-like [Vitis vinifera];; (*SWP) sp|Q84MA9|Y1063_ARATH (e_value=0.0) Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana GN=At1g60630 PE=2 SV=1;; (*TAIR) AT1G10850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:3612228-3614343 FORWARD LENGTH=663;; (*ITAG) Solyc04g008650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2280193-2286296 transcript_region:SL2.40ch04:2280193..2286296+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00019745g0013.1 protein AED:0.16 eAED:0.17 QI:90|0.9|0.81|1|0.7|0.72|11|739|586; (*GB) gi|225425094|ref|XP_002272175.1| (e_value=0.0) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like [Vitis vinifera];; (*SWP) sp|Q9SMX5|AGD4_ARATH (e_value=0.0) ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2;; (*TAIR) AT1G10870.1 (e_value=0.0) | Symbols: AGD4 | ARF-GAP domain 4 | chr1:3616905-3623612 REVERSE LENGTH=775;; (*ITAG) Solyc04g008660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2289220-2305938 transcript_region:SL2.40ch04:2289220..2305938+ go_terms:GO:0032312,GO:0005737 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312,GO:0005737 NbS00060912g0001.1 protein AED:0.01 eAED:0.01 QI:550|1|1|1|0.5|0.6|5|273|305; (*GB) gi|255576922|ref|XP_002529346.1| (e_value=2e-78) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FGT7|ARR18_ARATH (e_value=6e-12) Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2;; (*TAIR) AT2G03500.1 (e_value=2e-55) | Symbols: | Homeodomain-like superfamily protein | chr2:1059926-1062259 FORWARD LENGTH=432;; (*ITAG) Solyc12g006800.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1221133-1223691 transcript_region:SL2.40ch12:1221133..1223691- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 **-- Q6Z869_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00025398g0002.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|222; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-18) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc01g056950.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00025398g0008.1 protein AED:0.36 eAED:0.36 QI:21|1|0.91|1|0.90|0.83|12|399|214; (*GB) gi|225423915|ref|XP_002281939.1| (e_value=1e-114) PREDICTED: GDT1-like protein 4 [Vitis vinifera];; (*SWP) sp|Q9C6M1|GDT14_ARATH (e_value=3e-109) GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1;; (*TAIR) AT1G25520.1 (e_value=2e-110) | Symbols: | Uncharacterized protein family (UPF0016) | chr1:8962324-8964173 FORWARD LENGTH=230;; (*ITAG) Solyc05g009690.2.1 (e_value=7e-134) genomic_reference:SL2.40ch05 gene_region:3885603-3891659 transcript_region:SL2.40ch05:3885603..3891659+ go_terms:GO:0005515 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0005515 NbS00002828g0004.1 protein AED:0.01 eAED:0.01 QI:318|1|1|1|1|1|2|206|236; (*GB) gi|225466356|ref|XP_002275014.1| (e_value=5e-83) PREDICTED: uncharacterized protein LOC100255200 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-23) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G11280.2 (e_value=1e-80) | Symbols: | Duplicated homeodomain-like superfamily protein | chr3:3533477-3534393 REVERSE LENGTH=263;; (*ITAG) Solyc03g096350.2.1 (e_value=6e-115) genomic_reference:SL2.40ch03 gene_region:51841422-51842817 transcript_region:SL2.40ch03:51841422..51842817- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00012829g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0.93|1|0.35|0.53|15|202|410; (*GB) gi|297739353|emb|CBI29343.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3SX07|PUS3_BOVIN (e_value=7e-92) tRNA pseudouridine(38/39) synthase OS=Bos taurus GN=PUS3 PE=2 SV=1;; (*TAIR) AT1G34150.1 (e_value=3e-161) | Symbols: | Pseudouridine synthase family protein | chr1:12436086-12439237 FORWARD LENGTH=446;; (*ITAG) Solyc04g072140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56758720-56766948 transcript_region:SL2.40ch04:56758720..56766948+ go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase (AHRD V1 **** C1GUB7_PARBA); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00012829g0002.1 protein AED:0.05 eAED:0.06 QI:0|0.66|0.25|0.75|1|1|4|0|714; (*GB) gi|225463115|ref|XP_002264439.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249422 [Vitis vinifera];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=8e-28) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT1G22730.1 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr1:8046511-8048769 FORWARD LENGTH=693;; (*ITAG) Solyc04g072130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56753220-56756514 transcript_region:SL2.40ch04:56753220..56756514- go_terms:GO:0005515 functional_description:"Programmed cell death 4a (AHRD V1 *--- D3TLD2_GLOMM); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00021111g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.92|0.86|1|0.78|0.66|15|179|660; (*GB) gi|255560215|ref|XP_002521125.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q5B4C9|ATG26_EMENI (e_value=3e-66) Sterol 3-beta-glucosyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg26 PE=3 SV=1;; (*TAIR) AT3G07020.2 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2218120-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc04g051150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48879825-48894993 transcript_region:SL2.40ch04:48879825..48894993+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00019588g0006.1 protein AED:0.33 eAED:0.42 QI:0|0|0|1|1|1|2|0|240; (*ITAG) Solyc02g077170.1.1 (e_value=8e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36768265-36772211 transcript_region:SL2.40ch02:36768265..36772211- functional_description:"X1 (Fragment) (AHRD V1 *--- Q7FSP8_MAIZE); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbC23681997g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|83284003|gb|ABC01909.1| (e_value=2e-38) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=3e-36) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=2e-37) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=3e-41) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00013280g0004.1 protein AED:0.10 eAED:0.10 QI:74|1|0.90|1|0.7|0.81|11|0|869; (*GB) gi|359491386|ref|XP_002273412.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1-like [Vitis vinifera];; (*SWP) sp|O13046|WDHD1_XENLA (e_value=9e-69) WD repeat and HMG-box DNA-binding protein 1 OS=Xenopus laevis GN=wdhd1 PE=1 SV=1;; (*TAIR) AT3G42660.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:14751280-14755701 FORWARD LENGTH=953;; (*ITAG) Solyc03g114690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58641516-58647305 transcript_region:SL2.40ch03:58641516..58647305- go_terms:GO:0000166 functional_description:"Wd-40 repeat-containing protein (AHRD V1 *--- B8C836_THAPS); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00013280g0005.1 protein AED:0.12 eAED:0.12 QI:49|1|0.5|1|0|0|2|255|35 NbS00037897g0005.1 protein AED:0.25 eAED:0.25 QI:75|0.8|0.81|1|1|1|11|378|388; (*GB) gi|359489764|ref|XP_002272417.2| (e_value=3e-168) PREDICTED: probable isoaspartyl peptidase/L-asparaginase 4-like [Vitis vinifera];; (*SWP) sp|O65268|ASPG4_ARATH (e_value=1e-147) Probable isoaspartyl peptidase/L-asparaginase 4 OS=Arabidopsis thaliana GN=At4g00590 PE=2 SV=3;; (*TAIR) AT4G00590.1 (e_value=1e-148) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:252835-254880 FORWARD LENGTH=408;; (*ITAG) Solyc05g048770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58569253-58583878 transcript_region:SL2.40ch05:58569253..58583878+ go_terms:GO:0003948,GO:0008233 functional_description:"N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 *-** ASPG_HUMAN); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948,GO:0008233 NbS00043131g0003.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.83|1|1|1|12|0|771; (*GB) gi|224115866|ref|XP_002317144.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=4e-28) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT4G22120.6 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771;; (*ITAG) Solyc02g081030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39662050-39674092 transcript_region:SL2.40ch02:39662050..39674092- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00016418g0005.1 protein AED:0.25 eAED:0.26 QI:0|0.71|0.75|1|0.42|0.5|8|956|244; (*GB) gi|4008159|dbj|BAA35121.1| (e_value=2e-96) DnaJ homolog [Salix gilgiana];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=6e-86) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=2e-78) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc01g090550.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00045500g0004.1 protein AED:0.06 eAED:0.06 QI:394|1|1|1|0.71|0.5|8|374|673; (*GB) gi|255540853|ref|XP_002511491.1| (e_value=0.0) galactosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc03g113520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57689199-57692613 transcript_region:SL2.40ch03:57689199..57692613- go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00051012g0003.1 protein AED:0.30 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|220; (*ITAG) Solyc07g032700.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00006161g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|444; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=0.0) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=4e-152) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=2e-77) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g007490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1761848-1763179 transcript_region:SL2.40ch11:1761848..1763179- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00018686g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.87|0.66|0.88|1|1|9|0|444; (*GB) gi|225435868|ref|XP_002263865.1| (e_value=0.0) PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera];; (*SWP) sp|O81027|HMGCL_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2;; (*TAIR) AT2G26800.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433;; (*ITAG) Solyc11g065070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47453918-47458087 transcript_region:SL2.40ch11:47453918..47458087+ go_terms:GO:0008152,GO:0003824,GO:0004419 functional_description:"Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase "; GO:0008152,GO:0003824,GO:0004419 NbS00005253g0004.1 protein AED:0.17 eAED:0.18 QI:83|1|0.75|1|1|0.75|4|951|176; (*GB) gi|297738159|emb|CBI27360.3| (e_value=2e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=4e-38) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1;; (*TAIR) AT5G17240.1 (e_value=3e-39) | Symbols: SDG40 | SET domain group 40 | chr5:5666854-5668849 FORWARD LENGTH=491;; (*ITAG) Solyc02g081320.2.1 (e_value=3e-63) genomic_reference:SL2.40ch02 gene_region:39905623-39908287 transcript_region:SL2.40ch02:39905623..39908287- go_terms:GO:0005975 functional_description:"SET domain-containing protein (AHRD V1 ***- D7LWY5_ARALY); contains Interpro domain(s) IPR001214 SET "; GO:0005975 NbS00005253g0006.1 protein AED:0.43 eAED:0.55 QI:0|0|0|1|1|1|2|0|108; (*ITAG) Solyc02g081320.2.1 (e_value=3e-30) genomic_reference:SL2.40ch02 gene_region:39905623-39908287 transcript_region:SL2.40ch02:39905623..39908287- go_terms:GO:0005975 functional_description:"SET domain-containing protein (AHRD V1 ***- D7LWY5_ARALY); contains Interpro domain(s) IPR001214 SET "; GO:0005975 NbS00005253g0012.1 protein AED:0.13 eAED:0.13 QI:1019|1|1|1|1|1|6|295|440; (*GB) gi|325514254|gb|ADZ24219.1| (e_value=0.0) phytoene synthase 1 [Nicotiana tabacum];; (*SWP) sp|P37272|PSY_CAPAN (e_value=0.0) Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1;; (*TAIR) AT5G17230.2 (e_value=0.0) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422;; (*ITAG) Solyc02g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39913208-39917007 transcript_region:SL2.40ch02:39913208..39917007+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 2"; GO:0046905,GO:0016767 NbS00005253g0013.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=1e-11) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013044g0006.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|0.5|0.6|5|0|280; (*GB) gi|45238341|emb|CAD27343.1| (e_value=7e-166) protein kinase 2 beta chain [Nicotiana tabacum];; (*SWP) sp|O80507|CSK2E_ARATH (e_value=5e-140) Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1;; (*TAIR) AT2G44680.1 (e_value=4e-141) | Symbols: CKB4 | casein kinase II beta subunit 4 | chr2:18426898-18428166 REVERSE LENGTH=283;; (*ITAG) Solyc05g050680.2.1 (e_value=1e-163) genomic_reference:SL2.40ch05 gene_region:59944294-59953427 transcript_region:SL2.40ch05:59944294..59953427- go_terms:GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0019887 NbS00013044g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|35 NbC25329354g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|71; (*ITAG) Solyc04g072200.1.1 (e_value=1e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56792510-56794669 transcript_region:SL2.40ch04:56792510..56794669+ functional_description:"FRIGIDA (AHRD V1 *-*- B0Z0D2_ARALY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00008556g0010.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.25|1|0.66|0.5|4|0|592; (*GB) gi|255553993|ref|XP_002518037.1| (e_value=0.0) Phosphoenolpyruvate carboxylase, putative [Ricinus communis];; (*SWP) sp|Q9MAH0|CAPP1_ARATH (e_value=0.0) Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis thaliana GN=PPC1 PE=1 SV=1;; (*TAIR) AT1G53310.3 (e_value=0.0) | Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 | phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967;; (*ITAG) Solyc07g055060.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60510756-60518074 transcript_region:SL2.40ch07:60510756..60518074- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- O23946_GOSHI); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00008556g0009.1 protein AED:0.38 eAED:0.38 QI:153|1|0.88|1|0.87|0.88|9|0|343; (*GB) gi|225446613|ref|XP_002280622.1| (e_value=3e-147) PREDICTED: uncharacterized protein LOC100243760 [Vitis vinifera];; (*TAIR) AT2G31040.1 (e_value=2e-131) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc07g055050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60505700-60510259 transcript_region:SL2.40ch07:60505700..60510259+ functional_description:"ATP synthase I-like protein (AHRD V1 **-- A8HNA8_CHLRE); contains Interpro domain(s) IPR008413 ATPase, F0 complex, subunit I, bacillus-type "; NbS00057280g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.6|1|0.75|0.8|5|284|240; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=4e-128) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=2e-110) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=2e-111) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=8e-131) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00030525g0006.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|379; (*GB) gi|255539278|ref|XP_002510704.1| (e_value=2e-176) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYE5|E1312_ARATH (e_value=5e-73) Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1;; (*TAIR) AT1G30080.1 (e_value=2e-78) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:10551231-10553167 REVERSE LENGTH=408;; (*ITAG) Solyc12g040860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:40853563-40855400 transcript_region:SL2.40ch12:40853563..40855400- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00030525g0008.1 protein AED:0.24 eAED:0.24 QI:167|1|1|1|0.25|0.6|5|123|145; (*GB) gi|356517227|ref|XP_003527290.1| (e_value=7e-18) PREDICTED: uncharacterized protein LOC100527765 [Glycine max];; (*TAIR) AT1G42960.1 (e_value=3e-15) | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168;; (*ITAG) Solyc12g094630.1.1 (e_value=6e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63147638-63151573 transcript_region:SL2.40ch12:63147638..63151573+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030525g0011.1 protein AED:0.48 eAED:0.48 QI:7|1|0.5|1|0|0.5|2|326|61; (*ITAG) Solyc04g082640.2.1 (e_value=1e-16) genomic_reference:SL2.40ch04 gene_region:63847522-63851069 transcript_region:SL2.40ch04:63847522..63851069- functional_description:"Unknown Protein (AHRD V1)"; NbS00025796g0009.1 protein AED:0.16 eAED:0.16 QI:241|0.83|0.85|1|0.66|0.85|7|215|464; (*GB) gi|359488305|ref|XP_002279145.2| (e_value=6e-139) PREDICTED: uncharacterized protein LOC100256612 [Vitis vinifera];; (*SWP) sp|O04251|Y4211_ARATH (e_value=1e-14) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT1G67180.1 (e_value=3e-116) | Symbols: | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein | chr1:25130099-25132169 FORWARD LENGTH=453;; (*ITAG) Solyc02g065620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31359577-31366020 transcript_region:SL2.40ch02:31359577..31366020- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 **-- D7KV04_ARALY); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00025796g0001.1 protein AED:0.28 eAED:0.30 QI:0|1|0.5|1|1|1|4|0|455; (*GB) gi|225451915|ref|XP_002282805.1| (e_value=6e-123) PREDICTED: uncharacterized protein LOC100244706 [Vitis vinifera];; (*TAIR) AT1G67170.1 (e_value=4e-83) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). | chr1:25127727-25129145 FORWARD LENGTH=359;; (*ITAG) Solyc02g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31367891-31374079 transcript_region:SL2.40ch02:31367891..31374079- functional_description:"Myosin-like protein (AHRD V1 *--- Q9C717_ARATH)"; NbS00013806g0003.1 protein AED:0.03 eAED:0.38 QI:296|0|0.5|1|1|1|2|0|140 NbS00052382g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc11g056440.1.1 (e_value=6e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43146020-43146217 transcript_region:SL2.40ch11:43146020..43146217- functional_description:"Unknown Protein (AHRD V1)"; NbS00019572g0003.1 protein AED:0.11 eAED:0.11 QI:831|0.85|0.87|1|1|1|8|528|481; (*GB) gi|297734110|emb|CBI15357.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-65) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G15740.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc03g114730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58687413-58692533 transcript_region:SL2.40ch03:58687413..58692533- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00052622g0004.1 protein AED:0.22 eAED:0.22 QI:208|1|0.5|1|1|1|4|0|141; (*GB) gi|224105605|ref|XP_002313869.1| (e_value=2e-47) stress-enhanced protein 1 [Populus trichocarpa];; (*TAIR) AT4G34190.1 (e_value=6e-45) | Symbols: SEP1 | stress enhanced protein 1 | chr4:16372606-16373511 REVERSE LENGTH=146;; (*ITAG) Solyc01g107660.2.1 (e_value=8e-85) genomic_reference:SL2.40ch01 gene_region:86892697-86895053 transcript_region:SL2.40ch01:86892697..86895053- go_terms:GO:0016168 functional_description:"Stress enhanced protein 1 (Fragment) (AHRD V1 *-*- C6JT32_9MYRT)"; GO:0016168 NbS00052622g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|167; (*GB) gi|255555307|ref|XP_002518690.1| (e_value=3e-57) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*TAIR) AT2G15320.1 (e_value=7e-45) | Symbols: | Leucine-rich repeat (LRR) family protein | chr2:6666527-6667675 REVERSE LENGTH=382;; (*ITAG) Solyc01g107670.2.1 (e_value=2e-76) genomic_reference:SL2.40ch01 gene_region:86899262-86900658 transcript_region:SL2.40ch01:86899262..86900658- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00015970g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|364; (*GB) gi|359492465|ref|XP_003634417.1| (e_value=2e-80) PREDICTED: RING-H2 finger protein ATL54-like [Vitis vinifera];; (*SWP) sp|Q9LF64|ATL52_ARATH (e_value=8e-42) RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1;; (*TAIR) AT5G17600.1 (e_value=6e-43) | Symbols: | RING/U-box superfamily protein | chr5:5800029-5801117 REVERSE LENGTH=362;; (*ITAG) Solyc12g087840.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61787827-61788774 transcript_region:SL2.40ch12:61787827..61788774+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007059g0006.1 protein AED:0.24 eAED:0.31 QI:0|0|0|0.66|0|0|6|0|385; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-54) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00007059g0101.1 protein AED:0.05 eAED:0.05 QI:460|1|1|1|0.85|0.87|8|19|448 NbS00016830g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|4|0|153; (*GB) gi|1762945|gb|AAC49975.1| (e_value=8e-55) ORF; able to induce HR-like lesions [Nicotiana tabacum];; (*TAIR) AT4G14420.1 (e_value=7e-37) | Symbols: | HR-like lesion-inducing protein-related | chr4:8302171-8303738 REVERSE LENGTH=158;; (*ITAG) Solyc09g089670.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:64784520-64787322 transcript_region:SL2.40ch09:64784520..64787322+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6T757_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00025848g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.2|1|1|0.6|5|0|1101; (*GB) gi|357500731|ref|XP_003620654.1| (e_value=0.0) Elongation factor Ts [Medicago truncatula];; (*SWP) sp|A2BW76|EFTS_PROM5 (e_value=7e-86) Elongation factor Ts OS=Prochlorococcus marinus (strain MIT 9515) GN=tsf PE=3 SV=1;; (*TAIR) AT4G29060.1 (e_value=0.0) | Symbols: emb2726 | elongation factor Ts family protein | chr4:14317744-14321315 FORWARD LENGTH=953;; (*ITAG) Solyc07g018360.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:10406673-10413230 transcript_region:SL2.40ch07:10406673..10413230- go_terms:GO:0006508,GO:0003723,GO:0005622 functional_description:"Elongation factor Ts (AHRD V1 ***- Q9SZD6_ARATH); contains Interpro domain(s) IPR014039 Translation elongation factor EFTs/EF1B, dimerisation "; GO:0006508,GO:0003723,GO:0005622 NbS00025848g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|100; (*GB) gi|297803172|ref|XP_002869470.1| (e_value=3e-14) predicted protein [Arabidopsis lyrata subsp. lyrata]; NbS00027063g0002.1 protein AED:0.08 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|388508148|gb|AFK42140.1| (e_value=2e-35) unknown [Lotus japonicus];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=1e-17) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G43720.1 (e_value=7e-22) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:15615549-15617099 REVERSE LENGTH=193;; (*ITAG) Solyc11g072030.1.1 (e_value=9e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:52404039-52406751 transcript_region:SL2.40ch11:52404039..52406751- functional_description:"Non-specific lipid-transfer protein-like protein (AHRD V1 ***- C0KHK0_9CARY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00009606g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|500; (*GB) gi|225425734|ref|XP_002271313.1| (e_value=2e-169) PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZVG8|PPR60_ARATH (e_value=2e-152) Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1;; (*TAIR) AT1G26900.1 (e_value=2e-153) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:9319756-9321474 REVERSE LENGTH=572;; (*ITAG) Solyc01g010510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5508421-5510219 transcript_region:SL2.40ch01:5508421..5510219- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KPN1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00015277g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.77|1|0.87|0.77|9|382|431; (*GB) gi|218197147|gb|EEC79574.1| (e_value=4e-156) hypothetical protein OsI_20733 [Oryza sativa Indica Group];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=1e-107) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G29160.3 (e_value=2e-111) | Symbols: AKIN11, KIN11 | SNF1 kinase homolog 11 | chr3:11129768-11131510 REVERSE LENGTH=359;; (*ITAG) Solyc03g115700.2.1 (e_value=2e-116) genomic_reference:SL2.40ch03 gene_region:59393788-59397846 transcript_region:SL2.40ch03:59393788..59397846+ go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase alpha-2 catalytic subunit (AHRD V1 **** Q2LAI0_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00000197g0009.1 protein AED:0.00 eAED:0.00 QI:211|1|1|1|1|1|2|160|536; (*GB) gi|224107517|ref|XP_002314508.1| (e_value=4e-111) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33320.1 (e_value=4e-73) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602;; (*ITAG) Solyc12g096970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64007906-64009952 transcript_region:SL2.40ch12:64007906..64009952+ functional_description:"C2 domain-containing protein (AHRD V1 *--- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00000197g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|191; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-44) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9ASZ8|PPR37_ARATH (e_value=1e-23) Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1;; (*TAIR) AT1G12620.1 (e_value=1e-24) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4294883-4296748 REVERSE LENGTH=621;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00013555g0004.1 protein AED:0.07 eAED:0.07 QI:59|0.33|0.25|1|0.33|0.5|4|0|238; (*GB) gi|350535843|ref|NP_001234472.1| (e_value=4e-130) xyloglucan endotransglucosylase-hydrolase XTH3 precursor [Solanum lycopersicum];; (*SWP) sp|Q38910|XTH23_ARATH (e_value=1e-107) Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1;; (*TAIR) AT4G25810.1 (e_value=8e-109) | Symbols: XTR6, XTH23 | xyloglucan endotransglycosylase 6 | chr4:13128694-13129715 FORWARD LENGTH=286;; (*ITAG) Solyc03g093080.2.1 (e_value=2e-133) genomic_reference:SL2.40ch03 gene_region:47714082-47715297 transcript_region:SL2.40ch03:47714082..47715297- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 **** C0IRG8_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00001060g0005.1 protein AED:0.14 eAED:0.14 QI:261|1|1|1|0.8|0.83|6|330|242; (*GB) gi|255560784|ref|XP_002521405.1| (e_value=1e-153) Protein C20orf11, putative [Ricinus communis];; (*SWP) sp|Q54X16|U559_DICDI (e_value=8e-91) UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2;; (*TAIR) AT1G61150.1 (e_value=4e-136) | Symbols: | LisH and RanBPM domains containing protein | chr1:22542928-22544355 FORWARD LENGTH=243;; (*ITAG) Solyc03g006580.2.1 (e_value=7e-159) genomic_reference:SL2.40ch03 gene_region:1153790-1163207 transcript_region:SL2.40ch03:1153790..1163207+ go_terms:GO:0005515 functional_description:"Ran-binding proteins 9/10 homolog (AHRD V1 *--* RBP9X_DROME); contains Interpro domain(s) IPR019589 Ran binding protein, CRA domain "; GO:0005515 NbS00001060g0006.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.25|0.66|0.5|4|0|118 NbS00012060g0001.1 protein AED:0.16 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|147851991|emb|CAN79067.1| (e_value=8e-76) hypothetical protein VITISV_043720 [Vitis vinifera];; (*SWP) sp|Q09463|RNF5_CAEEL (e_value=9e-28) RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1;; (*TAIR) AT1G19310.1 (e_value=1e-66) | Symbols: | RING/U-box superfamily protein | chr1:6676424-6677104 REVERSE LENGTH=226;; (*ITAG) Solyc01g109340.2.1 (e_value=6e-125) genomic_reference:SL2.40ch01 gene_region:88071379-88072418 transcript_region:SL2.40ch01:88071379..88072418- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 **-- B6UBI0_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00012060g0002.1 protein AED:0.23 eAED:0.26 QI:0|0.5|0.4|1|1|1|5|0|276; (*GB) gi|255556127|ref|XP_002519098.1| (e_value=9e-34) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XIA4|CCS1_ARATH (e_value=2e-29) Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1;; (*TAIR) AT1G49380.1 (e_value=1e-30) | Symbols: | cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547;; (*ITAG) Solyc10g051200.1.1 (e_value=7e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47193947-47197659 transcript_region:SL2.40ch10:47193947..47197659- functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7KE35_ARALY); contains Interpro domain(s) IPR007816 ResB-like "; NbS00009678g0004.1 protein AED:0.24 eAED:0.23 QI:224|0.85|0.66|1|1|1|15|0|1042; (*GB) gi|359478503|ref|XP_002276796.2| (e_value=0.0) PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8LPR9|TI110_ARATH (e_value=0.0) Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1;; (*TAIR) AT1G06950.1 (e_value=0.0) | Symbols: ATTIC110, TIC110 | translocon at the inner envelope membrane of chloroplasts 110 | chr1:2130303-2135563 REVERSE LENGTH=1016;; (*ITAG) Solyc09g031780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23850782-23867903 transcript_region:SL2.40ch09:23850782..23867903- functional_description:"Tic110 family transporter chloroplast inner envelope protein Tic110 (AHRD V1 **-- A4S0R7_OSTLU)"; NbS00016503g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|4|820|469; (*GB) gi|224096536|ref|XP_002310648.1| (e_value=3e-163) predicted protein [Populus trichocarpa];; (*TAIR) AT5G23240.1 (e_value=4e-157) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:7826857-7828534 REVERSE LENGTH=465;; (*ITAG) Solyc02g014860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:10421855-10423865 transcript_region:SL2.40ch02:10421855..10423865+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- D2QAE1_BIFDB); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00016503g0002.1 protein AED:0.36 eAED:0.46 QI:0|0|0|1|1|1|2|0|125; (*GB) gi|32493106|gb|AAP85544.1| (e_value=4e-68) putative DIM-like protein [Glycine max];; (*SWP) sp|P83877|TXN4A_MOUSE (e_value=3e-63) Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1;; (*TAIR) AT5G08290.1 (e_value=2e-70) | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD LENGTH=142;; (*ITAG) Solyc02g014870.2.1 (e_value=5e-72) genomic_reference:SL2.40ch02 gene_region:10424377-10430192 transcript_region:SL2.40ch02:10424377..10430192- go_terms:GO:0005515 functional_description:"Mitosis protein dim1 (AHRD V1 **-- B6T4C6_MAIZE); contains Interpro domain(s) IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP "; GO:0005515 NbS00011125g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|224134488|ref|XP_002321836.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-13) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62360.1 (e_value=4e-18) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25040699-25041310 FORWARD LENGTH=203;; (*ITAG) Solyc11g019910.1.1 (e_value=4e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:9754107-9754697 transcript_region:SL2.40ch11:9754107..9754697- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9T3X5_RICCO); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00041757g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|225434526|ref|XP_002278655.1| (e_value=2e-44) PREDICTED: RING-H2 finger protein ATL5 [Vitis vinifera];; (*SWP) sp|Q8L9T5|ATL2_ARATH (e_value=9e-21) RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2;; (*TAIR) AT3G16720.1 (e_value=7e-22) | Symbols: ATL2, TL2 | TOXICOS EN LEVADURA 2 | chr3:5692880-5693794 FORWARD LENGTH=304;; (*ITAG) Solyc06g007230.1.1 (e_value=2e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:1294562-1295083 transcript_region:SL2.40ch06:1294562..1295083+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00041757g0008.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|0|0|3|0|168; (*ITAG) Solyc01g010100.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4837391-4838867 transcript_region:SL2.40ch01:4837391..4838867+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00037056g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|0.5|0.66|3|0|191; (*GB) gi|255568259|ref|XP_002525104.1| (e_value=8e-55) homeobox protein, putative [Ricinus communis];; (*SWP) sp|O23208|ATB40_ARATH (e_value=3e-52) Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3;; (*TAIR) AT4G36740.1 (e_value=2e-53) | Symbols: HB-5, ATHB40, HB40 | homeobox protein 40 | chr4:17314649-17316314 REVERSE LENGTH=216;; (*ITAG) Solyc02g085630.2.1 (e_value=6e-75) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00033581g0001.1 protein AED:0.40 eAED:0.41 QI:0|0|0.5|1|0|0.5|2|62|201; (*GB) gi|359479627|ref|XP_003632306.1| (e_value=2e-31) PREDICTED: uncharacterized protein LOC100855240 [Vitis vinifera];; (*TAIR) AT4G02715.1 (e_value=1e-18) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1202170-1202787 REVERSE LENGTH=205;; (*ITAG) Solyc06g084200.1.1 (e_value=2e-72) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:45676332-45677006 transcript_region:SL2.40ch06:45676332..45677006- functional_description:"Unknown Protein (AHRD V1)"; NbS00033581g0005.1 protein AED:0.00 eAED:0.00 QI:144|1|1|1|0|0.33|3|366|159; (*GB) gi|359479639|ref|XP_003632312.1| (e_value=4e-39) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=1e-14) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=3e-34) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc06g084190.2.1 (e_value=9e-48) genomic_reference:SL2.40ch06 gene_region:45673273-45674021 transcript_region:SL2.40ch06:45673273..45674021+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9NBN9_POPTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00003356g0012.1 protein AED:0.16 eAED:0.16 QI:241|1|0.83|1|0.4|0|6|467|222; (*GB) gi|356559051|ref|XP_003547815.1| (e_value=4e-128) PREDICTED: probable calcium-binding protein CML21-like [Glycine max];; (*SWP) sp|Q52K82|CML21_ARATH (e_value=7e-113) Probable calcium-binding protein CML21 OS=Arabidopsis thaliana GN=CML21 PE=2 SV=1;; (*TAIR) AT4G26470.1 (e_value=5e-114) | Symbols: | Calcium-binding EF-hand family protein | chr4:13371377-13372343 FORWARD LENGTH=231;; (*ITAG) Solyc10g005750.2.1 (e_value=4e-150) genomic_reference:SL2.40ch10 gene_region:609439-611689 transcript_region:SL2.40ch10:609439..611689+ go_terms:GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 **-* B2KTA9_WHEAT); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00003356g0008.1 protein AED:0.27 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|225462060|ref|XP_002275924.1| (e_value=2e-23) PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera];; (*TAIR) AT3G13310.1 (e_value=5e-22) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4310827-4311300 REVERSE LENGTH=157;; (*ITAG) Solyc07g065960.1.1 (e_value=2e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64759664-64760149 transcript_region:SL2.40ch07:64759664..64760149- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 ***- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00003356g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|287; (*GB) gi|313906952|gb|ADR83568.1| (e_value=3e-146) putative Myb103 transcription factor [Lycium barbarum];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=2e-38) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G56110.1 (e_value=5e-79) | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb domain protein 103 | chr5:22719191-22720664 FORWARD LENGTH=320;; (*ITAG) Solyc10g005760.1.1 (e_value=2e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:612159-614054 transcript_region:SL2.40ch10:612159..614054- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00035138g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|299115996|emb|CBN75997.1| (e_value=7e-21) LRR-GTPase of the ROCO family [Ectocarpus siliculosus];; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=1e-21) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT1G35710.1 (e_value=1e-22) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120;; (*ITAG) Solyc04g077710.1.1 (e_value=9e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60235682-60237088 transcript_region:SL2.40ch04:60235682..60237088- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00007095g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.6|0.66|1|1|1|6|0|446; (*GB) gi|225428031|ref|XP_002278931.1| (e_value=0.0) PREDICTED: WD-40 repeat-containing protein MSI2 [Vitis vinifera];; (*SWP) sp|O22468|MSI2_ARATH (e_value=0.0) WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1;; (*TAIR) AT2G16780.1 (e_value=0.0) | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family protein / WD-40 repeat family protein | chr2:7281615-7283583 REVERSE LENGTH=415;; (*ITAG) Solyc01g111590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89573829-89576771 transcript_region:SL2.40ch01:89573829..89576771- go_terms:GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042393 NbS00007095g0009.1 protein AED:0.17 eAED:0.18 QI:0|0|0.5|1|1|1|2|305|342; (*GB) gi|225428029|ref|XP_002278836.1| (e_value=9e-108) PREDICTED: uncharacterized protein LOC100243471 [Vitis vinifera];; (*TAIR) AT2G16770.1 (e_value=6e-87) | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249;; (*ITAG) Solyc01g111580.2.1 (e_value=1e-147) genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00007095g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.4|0.33|1|1|1|6|0|469; (*GB) gi|297744611|emb|CBI37873.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZUE0|PEK12_ARATH (e_value=5e-33) Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2;; (*TAIR) AT2G16750.1 (e_value=3e-54) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:7271786-7274446 FORWARD LENGTH=617;; (*ITAG) Solyc01g111570.2.1 (e_value=5e-134) genomic_reference:SL2.40ch01 gene_region:89560023-89563887 transcript_region:SL2.40ch01:89560023..89563887+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00056567g0001.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.84|1|1|1|13|0|666; (*GB) gi|225456493|ref|XP_002280913.1| (e_value=0.0) PREDICTED: protein BONZAI 1 [Vitis vinifera];; (*SWP) sp|Q941L3|BON1_ARATH (e_value=0.0) Protein BONZAI 1 OS=Arabidopsis thaliana GN=BON1 PE=1 SV=2;; (*TAIR) AT5G61910.4 (e_value=0.0) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24855908-24863729 REVERSE LENGTH=1346;; (*ITAG) Solyc03g118200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61188206-61198586 transcript_region:SL2.40ch03:61188206..61198586- go_terms:GO:0005544 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544 NbS00018991g0009.1 protein AED:0.06 eAED:0.07 QI:0|1|0.6|1|1|1|5|0|736; (*GB) gi|17865457|sp|O82150.2|FTSH_TOBAC (e_value=0.0) RecName: Full=ATP-dependent zinc metalloprotease FTSH, chloroplastic; AltName: Full=DS9; Flags: Precursor;; (*SWP) sp|O82150|FTSH_TOBAC (e_value=0.0) ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2;; (*TAIR) AT5G42270.1 (e_value=0.0) | Symbols: VAR1, FTSH5 | FtsH extracellular protease family | chr5:16902659-16905102 FORWARD LENGTH=704;; (*ITAG) Solyc04g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63573950-63577767 transcript_region:SL2.40ch04:63573950..63577767+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment) (AHRD V1 ***- FTSH_CAPAN); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00018991g0010.1 protein AED:0.33 eAED:0.33 QI:0|1|0.88|1|0.87|0.88|9|0|497; (*GB) gi|147797812|emb|CAN74078.1| (e_value=0.0) hypothetical protein VITISV_000979 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT4G35230.1 (e_value=0.0) | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755325-16758041 REVERSE LENGTH=512;; (*ITAG) Solyc04g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63577253-63583094 transcript_region:SL2.40ch04:63577253..63583094- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00039248g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.85|0.75|1|0.42|0.5|8|0|362; (*GB) gi|225437332|ref|XP_002264804.1| (e_value=3e-172) PREDICTED: WD repeat-containing protein 89 homolog [Vitis vinifera];; (*SWP) sp|Q54QU5|WDR89_DICDI (e_value=1e-32) WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1;; (*TAIR) AT2G47790.1 (e_value=8e-161) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:19571102-19572946 REVERSE LENGTH=392;; (*ITAG) Solyc09g075000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62283687-62287440 transcript_region:SL2.40ch09:62283687..62287440- functional_description:"WD repeat protein (AHRD V1 **-- B8M2Y5_TALSN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016738g0007.1 protein AED:0.19 eAED:0.20 QI:195|0.5|0.33|1|0.5|0.33|3|0|352; (*GB) gi|297744154|emb|CBI37124.3| (e_value=2e-109) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G06210.1 (e_value=2e-86) | Symbols: | ENTH/VHS/GAT family protein | chr1:1897567-1898986 FORWARD LENGTH=383;; (*ITAG) Solyc09g025240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19262373-19270577 transcript_region:SL2.40ch09:19262373..19270577- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein hse1 (AHRD V1 *--- C5JNH1_AJEDS); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00019926g0009.1 protein AED:0.14 eAED:0.14 QI:51|0.66|0.5|1|0.33|0.5|4|13|352; (*GB) gi|255580766|ref|XP_002531204.1| (e_value=0.0) Benzoate carboxyl methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9FLN8|IAMT1_ARATH (e_value=0.0) Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1;; (*TAIR) AT5G55250.1 (e_value=0.0) | Symbols: IAMT1 | IAA carboxylmethyltransferase 1 | chr5:22407589-22410854 REVERSE LENGTH=386;; (*ITAG) Solyc12g014500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5468306-5475778 transcript_region:SL2.40ch12:5468306..5475778- go_terms:GO:0051749,GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein (AHRD V1 **** Q9FLN8_ARATH); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0051749,GO:0008757 NbS00004667g0115.1 protein AED:0.16 eAED:0.16 QI:256|0.81|0.81|0.96|0.93|0.93|33|496|1168 NbS00004667g0122.1 protein AED:0.02 eAED:0.02 QI:39|1|1|1|0.66|0.75|4|77|291 NbS00004667g0116.1 protein AED:0.21 eAED:0.21 QI:91|1|1|1|1|1|5|124|433 NbS00004667g0121.1 protein AED:0.43 eAED:0.34 QI:0|1|0.33|1|0.5|0|3|11|236 NbS00029613g0017.1 protein AED:0.11 eAED:0.12 QI:0|0.76|0.72|0.88|0.76|0.77|18|0|498; (*GB) gi|356546253|ref|XP_003541544.1| (e_value=0.0) PREDICTED: splicing factor 3B subunit 2-like [Glycine max];; (*SWP) sp|Q13435|SF3B2_HUMAN (e_value=2e-117) Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2;; (*TAIR) AT4G21660.1 (e_value=0.0) | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584;; (*ITAG) Solyc02g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37836635-37847031 transcript_region:SL2.40ch02:37836635..37847031+ go_terms:GO:0005515 functional_description:"Splicing factor 3b subunit 2 (AHRD V1 **-- Q80W39_MOUSE); contains Interpro domain(s) IPR007180 Protein of unknown function DUF382 "; GO:0005515 NbS00029613g0018.1 protein AED:0.40 eAED:0.40 QI:0|0.33|0.25|0.5|0.66|0.75|4|0|242; (*GB) gi|224113987|ref|XP_002316635.1| (e_value=2e-89) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=4e-72) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT1G61110.1 (e_value=7e-81) | Symbols: anac025, NAC025 | NAC domain containing protein 25 | chr1:22516730-22518055 FORWARD LENGTH=323;; (*ITAG) Solyc07g063420.2.1 (e_value=6e-90) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00029613g0007.1 protein AED:0.64 eAED:0.93 QI:0|0|0|0.33|1|1|3|0|245 NbS00029613g0002.1 protein AED:0.20 eAED:0.23 QI:0|0.33|0.28|0.85|1|1|7|0|644; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=2e-93) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=2e-74) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=7e-75) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc03g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1104857-1110299 transcript_region:SL2.40ch03:1104857..1110299- go_terms:GO:0005524 functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; GO:0005524 NbS00032088g0003.1 protein AED:0.00 eAED:0.00 QI:643|1|1|1|1|1|2|375|309; (*GB) gi|224129830|ref|XP_002328813.1| (e_value=9e-79) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9C932|NAC19_ARATH (e_value=2e-32) NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1;; (*TAIR) AT2G02450.2 (e_value=8e-75) | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC domain containing protein 35 | chr2:648044-650649 FORWARD LENGTH=414;; (*ITAG) Solyc01g102740.2.1 (e_value=7e-102) genomic_reference:SL2.40ch01 gene_region:83236708-83238761 transcript_region:SL2.40ch01:83236708..83238761+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9GVP9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00044816g0007.1 protein AED:0.09 eAED:0.11 QI:58|0.94|0.89|1|0.77|0.78|37|230|2847; (*GB) gi|255561647|ref|XP_002521833.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=3e-121) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G19050.1 (e_value=0.0) | Symbols: POK2 | phragmoplast orienting kinesin 2 | chr3:6578047-6590106 FORWARD LENGTH=2771;; (*ITAG) Solyc01g108670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87657336-87672745 transcript_region:SL2.40ch01:87657336..87672745- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q75LL2_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00005756g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|0.5|0|3|0|197; (*GB) gi|83778375|gb|ABC47128.1| (e_value=1e-111) beta expansin 2 precursor [Solanum tuberosum];; (*SWP) sp|Q7XT40|EXB15_ORYSJ (e_value=1e-70) Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2;; (*TAIR) AT1G65680.1 (e_value=1e-64) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273;; (*ITAG) Solyc03g093390.2.1 (e_value=5e-110) genomic_reference:SL2.40ch03 gene_region:48101735-48103600 transcript_region:SL2.40ch03:48101735..48103600- go_terms:GO:0005576 functional_description:"Expansin protein (AHRD V1 ***- Q14F61_WHEAT); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00005756g0010.1 protein AED:0.31 eAED:0.33 QI:0|0.4|0.16|1|0.4|0.33|6|0|299; (*GB) gi|15224738|ref|NP_179511.1| (e_value=3e-73) putative receptor-like protein kinase [Arabidopsis thaliana];; (*SWP) sp|O65924|Y2921_ARATH (e_value=9e-75) Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=2 SV=1;; (*TAIR) AT2G19210.1 (e_value=7e-76) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr2:8335639-8339307 REVERSE LENGTH=881;; (*ITAG) Solyc03g093380.1.1 (e_value=1e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48094327-48101487 transcript_region:SL2.40ch03:48094327..48101487+ go_terms:GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0016301 NbS00005756g0011.1 protein AED:0.44 eAED:0.91 QI:57|0|0|1|0|0|4|153|29 NbS00028898g0003.1 protein AED:0.03 eAED:0.03 QI:0|0.83|0.42|0.85|0.66|0.57|7|259|1218; (*GB) gi|224116784|ref|XP_002317391.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P09122|DPO3X_BACSU (e_value=6e-41) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT4G18820.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:10330371-10334090 FORWARD LENGTH=1097;; (*ITAG) Solyc02g072090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35942239-35950672 transcript_region:SL2.40ch02:35942239..35950672- go_terms:GO:0009360,GO:0017111,GO:0006260 functional_description:"DNA polymerase III subunit gamma/tau (AHRD V1 *-*- D3EN68_UCYNA); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0017111,GO:0006260 NbS00008101g0018.1 protein AED:0.07 eAED:0.07 QI:747|0.93|0.93|1|0.86|0.93|16|298|846; (*GB) gi|297742262|emb|CBI34411.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7ZZ25|ATD1A_DANRE (e_value=1e-67) ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2;; (*TAIR) AT1G64110.3 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:23796887-23801255 REVERSE LENGTH=827;; (*ITAG) Solyc08g081740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61875719-61881459 transcript_region:SL2.40ch08:61875719..61881459- go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--* KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00008101g0020.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|0.8|0.75|0.6|5|0|464; (*GB) gi|224095660|ref|XP_002310427.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9HDC9|APMAP_HUMAN (e_value=1e-57) Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2;; (*TAIR) AT3G59530.2 (e_value=0.0) | Symbols: LAP3 | Calcium-dependent phosphotriesterase superfamily protein | chr3:21993710-21995164 FORWARD LENGTH=403;; (*ITAG) Solyc03g053130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20272424-20274176 transcript_region:SL2.40ch03:20272424..20274176- go_terms:GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- Q58L86_BRANA); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00008101g0021.1 protein AED:0.29 eAED:0.29 QI:57|1|1|1|0.66|0.75|4|29|372; (*GB) gi|225426098|ref|XP_002276929.1| (e_value=3e-156) PREDICTED: uncharacterized protein LOC100250094 [Vitis vinifera];; (*TAIR) AT5G60750.1 (e_value=1e-137) | Symbols: | CAAX amino terminal protease family protein | chr5:24431072-24433199 FORWARD LENGTH=347;; (*ITAG) Solyc08g081750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61884243-61888381 transcript_region:SL2.40ch08:61884243..61888381- go_terms:GO:0004175 functional_description:"CAAX amino terminal protease family protein (AHRD V1 ***- D7MUD5_ARALY); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0004175 NbS00008101g0019.1 protein AED:0.11 eAED:0.11 QI:134|0.75|0.8|1|0.5|0.6|5|409|245; (*GB) gi|192910708|gb|ACF06462.1| (e_value=1e-99) 24 kDa seed maturation protein [Elaeis guineensis];; (*SWP) sp|Q9SUT9|RTNLB_ARATH (e_value=1e-86) Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1;; (*TAIR) AT4G11220.1 (e_value=8e-88) | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein 2 | chr4:6838176-6839578 REVERSE LENGTH=271;; (*ITAG) Solyc08g081730.2.1 (e_value=6e-123) genomic_reference:SL2.40ch08 gene_region:61872803-61875069 transcript_region:SL2.40ch08:61872803..61875069+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00034515g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.33|3|0|516; (*GB) gi|255561377|ref|XP_002521699.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc07g043630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54905515-54907393 transcript_region:SL2.40ch07:54905515..54907393+ go_terms:GO:0015645 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0015645 NbS00000752g0001.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.8|1|1|1|5|0|196; (*GB) gi|224137180|ref|XP_002327058.1| (e_value=1e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=4e-91) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=3e-92) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc10g039280.1.1 (e_value=3e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20931712-20936807 transcript_region:SL2.40ch10:20931712..20936807+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00046235g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|0.87|1|0.85|0.87|8|0|712; (*GB) gi|302143004|emb|CBI20299.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc07g063130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62922350-62930717 transcript_region:SL2.40ch07:62922350..62930717- go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00048618g0002.1 protein AED:0.19 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|117; (*GB) gi|10281586|gb|AAG15543.1|AF260921_1 (e_value=1e-17) putative transposase [Petunia x hybrida];; (*ITAG) Solyc02g043820.1.1 (e_value=5e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061128g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|351722769|ref|NP_001234952.1| (e_value=6e-23) uncharacterized protein LOC100306688 [Glycine max];; (*TAIR) AT1G26920.1 (e_value=4e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69760.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 7; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:9329584-9330105 FORWARD LENGTH=173;; (*ITAG) Solyc05g007240.1.1 (e_value=8e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:1896460-1896984 transcript_region:SL2.40ch05:1896460..1896984+ functional_description:"TO109-12 (Fragment) (AHRD V1 *-*- Q3LVG1_TAROF)"; NbS00043066g0004.1 protein AED:0.34 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|102; (*ITAG) Solyc00g094850.1.1 (e_value=8e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15550404-15553250 transcript_region:SL2.40ch00:15550404..15553250+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031488g0011.1 protein AED:0.05 eAED:0.05 QI:36|0.8|0.83|1|1|0.83|6|56|301; (*GB) gi|225436926|ref|XP_002275123.1| (e_value=2e-77) PREDICTED: uncharacterized protein LOC100261455 [Vitis vinifera];; (*TAIR) AT4G02800.1 (e_value=1e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). | chr4:1250126-1251478 FORWARD LENGTH=333;; (*ITAG) Solyc06g008980.2.1 (e_value=5e-127) genomic_reference:SL2.40ch06 gene_region:2920667-2924085 transcript_region:SL2.40ch06:2920667..2924085+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031488g0007.1 protein AED:0.18 eAED:0.20 QI:0|0.81|0.75|1|1|1|12|0|450; (*GB) gi|255567660|ref|XP_002524809.1| (e_value=0.0) elongation factor tu, putative [Ricinus communis];; (*SWP) sp|Q9ZT91|EFTM_ARATH (e_value=0.0) Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1;; (*TAIR) AT4G02930.1 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr4:1295751-1298354 REVERSE LENGTH=454;; (*ITAG) Solyc06g008940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2866762-2874822 transcript_region:SL2.40ch06:2866762..2874822+ go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** B9SFP0_RICCO); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00031488g0009.1 protein AED:0.36 eAED:0.42 QI:0|0|0.2|1|0|0.2|5|295|357; (*GB) gi|255764587|gb|ACU33853.1| (e_value=3e-100) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9CAN0|PPR99_ARATH (e_value=1e-55) Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1;; (*TAIR) AT1G63130.1 (e_value=7e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23412854-23414746 FORWARD LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00031488g0013.1 protein AED:0.49 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|91; (*GB) gi|22128591|gb|AAM52341.1| (e_value=5e-23) fertility restorer-like protein [Petunia x hybrida];; (*TAIR) AT1G62670.1 (e_value=2e-13) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=8e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00031488g0109.1 protein AED:0.00 eAED:0.00 QI:32|1|1|1|1|1|2|202|133 NbS00031488g0108.1 protein AED:0.02 eAED:0.02 QI:599|1|1|1|1|1|2|356|840 NbS00031488g0115.1 protein AED:0.14 eAED:0.24 QI:1|0|0|1|1|0.5|2|0|278 NbS00031488g0114.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|66 NbS00031488g0113.1 protein AED:0.39 eAED:0.55 QI:60|0|0|1|0|0|2|0|56 NbS00020863g0001.1 protein AED:0.22 eAED:0.26 QI:91|0|0.66|1|0|0.33|3|351|260; (*GB) gi|224142903|ref|XP_002324772.1| (e_value=8e-97) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74120.1 (e_value=7e-94) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:27871923-27873260 REVERSE LENGTH=445;; (*ITAG) Solyc09g097920.1.1 (e_value=5e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00020863g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.62|0.33|1|1|1|9|0|535; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=0.0) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00020863g0007.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|111; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=9e-54) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=3e-55) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=9e-56) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00038054g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|4|0|130 NbS00024535g0014.1 protein AED:0.10 eAED:0.13 QI:0|0.33|0|1|0.33|0.75|4|0|404; (*GB) gi|134303284|gb|ABO70985.1| (e_value=0.0) gibberellin 2-oxidase 3 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=1e-133) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G78440.1 (e_value=5e-107) | Symbols: ATGA2OX1, GA2OX1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | chr1:29511772-29512990 REVERSE LENGTH=329;; (*ITAG) Solyc07g061720.2.1 (e_value=5e-165) genomic_reference:SL2.40ch07 gene_region:61904916-61906322 transcript_region:SL2.40ch07:61904916..61906322- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL8_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00024535g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|138 NbS00024535g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.8|1|1|1|10|191|312; (*GB) gi|62867578|emb|CAI84654.1| (e_value=1e-107) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G14450.1 (e_value=1e-90) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc10g007590.2.1 (e_value=8e-132) genomic_reference:SL2.40ch10 gene_region:1886605-1894821 transcript_region:SL2.40ch10:1886605..1894821- go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein (AHRD V1 *-** D3TN92_GLOMM); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00024535g0016.1 protein AED:0.23 eAED:0.23 QI:299|1|1|1|0.81|0.75|12|251|349; (*GB) gi|304368145|gb|ADM26718.1| (e_value=0.0) glycolate oxidase [Nicotiana benthamiana];; (*SWP) sp|P05414|GOX_SPIOL (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G14420.2 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821804-4823899 FORWARD LENGTH=367;; (*ITAG) Solyc07g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61655287-61658877 transcript_region:SL2.40ch07:61655287..61658877+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0S8Q7_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00004415g0005.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|255548249|ref|XP_002515181.1| (e_value=1e-28) protein transport protein sec23, putative [Ricinus communis];; (*TAIR) AT4G01810.1 (e_value=5e-25) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc09g055810.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:40994970-40995209 transcript_region:SL2.40ch09:40994970..40995209- functional_description:"Unknown Protein (AHRD V1)"; NbS00004415g0007.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|153799758|gb|ABS50610.1| (e_value=5e-70) cytochrome c biogenesis orf382 [Arabidopsis thaliana];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=1e-69) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=2e-72) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=7e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00004415g0020.1 protein AED:0.39 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|64; (*ITAG) Solyc02g092290.2.1 (e_value=4e-13) genomic_reference:SL2.40ch02 gene_region:47989385-47994458 transcript_region:SL2.40ch02:47989385..47994458+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein At5g02910 (AHRD V1 ***- FBL79_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00004415g0024.1 protein AED:0.13 eAED:0.13 QI:189|1|1|1|0|0|2|305|165; (*GB) gi|224129696|ref|XP_002328780.1| (e_value=4e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|P41189|RL7_LIBAF (e_value=1e-18) 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1;; (*TAIR) AT4G37660.1 (e_value=1e-46) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr4:17695543-17696046 FORWARD LENGTH=167;; (*ITAG) Solyc02g092300.1.1 (e_value=4e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47996516-47997016 transcript_region:SL2.40ch02:47996516..47997016- go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00004415g0025.1 protein AED:0.15 eAED:0.15 QI:201|0.75|0.77|1|0.87|1|9|305|869; (*GB) gi|357476491|ref|XP_003608531.1| (e_value=0.0) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q9FJW6|PP451_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=2 SV=2;; (*TAIR) AT5G67570.1 (e_value=0.0) | Symbols: EMB246, DG1, EMB1408 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26952352-26955480 FORWARD LENGTH=798;; (*ITAG) Solyc02g092310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47997870-48001877 transcript_region:SL2.40ch02:47997870..48001877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L2Y3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004415g0023.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.5|1|0.6|0.83|6|496|193; (*GB) gi|371501272|dbj|BAL44263.1| (e_value=7e-120) ADP-ribosylation factor-like 8b [Nicotiana tabacum];; (*SWP) sp|Q5ZKQ8|ARL8A_CHICK (e_value=5e-80) ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1;; (*TAIR) AT3G49870.1 (e_value=1e-112) | Symbols: ATARLA1C, ARLA1C | ADP-ribosylation factor-like A1C | chr3:18492674-18494021 REVERSE LENGTH=184;; (*ITAG) Solyc02g092330.2.1 (e_value=3e-119) genomic_reference:SL2.40ch02 gene_region:48003857-48008036 transcript_region:SL2.40ch02:48003857..48008036- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-RIBOSYLATION FACTOR-like protein (AHRD V1 ***- Q8VY57_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00024375g0004.1 protein AED:0.02 eAED:0.02 QI:140|1|1|1|1|1|6|461|411; (*GB) gi|225460849|ref|XP_002277187.1| (e_value=4e-165) PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Vitis vinifera];; (*SWP) sp|Q55B11|VTA1_DICDI (e_value=5e-29) Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1;; (*TAIR) AT4G26750.1 (e_value=2e-89) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475848-13478382 REVERSE LENGTH=421;; (*ITAG) Solyc07g064980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64146302-64151201 transcript_region:SL2.40ch07:64146302..64151201+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein VTA1 homolog (AHRD V1 *--- C1C2K6_9MAXI); contains Interpro domain(s) IPR006745 Protein of unknown function DUF605 "; GO:0005515 NbS00060606g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.2|0.8|0.5|0.4|5|0|365; (*GB) gi|225460935|ref|XP_002277934.1| (e_value=7e-80) PREDICTED: GDSL esterase/lipase At5g55050 [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=6e-53) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=4e-54) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064720.2.1 (e_value=4e-99) genomic_reference:SL2.40ch07 gene_region:63973282-63978859 transcript_region:SL2.40ch07:63973282..63978859+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00051753g0002.1 protein AED:0.05 eAED:0.05 QI:90|1|0.5|1|0|0.5|2|0|124; (*GB) gi|388500830|gb|AFK38481.1| (e_value=4e-25) unknown [Lotus japonicus];; (*SWP) sp|Q9LZS7|GDL71_ARATH (e_value=2e-23) GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1;; (*TAIR) AT5G03610.1 (e_value=1e-24) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359;; (*ITAG) Solyc09g009700.2.1 (e_value=6e-37) genomic_reference:SL2.40ch09 gene_region:3088430-3096264 transcript_region:SL2.40ch09:3088430..3096264+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g03610 (AHRD V1 **** GDL71_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00029693g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-29) hypothetical protein [Nicotiana tabacum]; NbS00029693g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc01g021730.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00029693g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|0.66|0.5|0.33|3|593|144 NbS00013205g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.71|0.62|1|1|1|8|235|304; (*GB) gi|380877011|sp|F6HDM2.1|NNRD_VITVI (e_value=3e-117) RecName: Full=ATP-dependent (S)-NAD(P)H-hydrate dehydratase; AltName: Full=ATP-dependent NAD(P)HX dehydratase;; (*SWP) sp|F6HDM2|NNRD_VITVI (e_value=9e-119) ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Vitis vinifera GN=VIT_05s0020g02800 PE=3 SV=1;; (*TAIR) AT5G19150.2 (e_value=4e-108) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:6426280-6428402 REVERSE LENGTH=365;; (*ITAG) Solyc01g079860.2.1 (e_value=2e-152) genomic_reference:SL2.40ch01 gene_region:71503246-71513306 transcript_region:SL2.40ch01:71503246..71513306+ go_terms:GO:0005515 functional_description:"Carbohydrate kinase YjeF related protein (AHRD V1 **-- A3DLN4_STAMF); contains Interpro domain(s) IPR000631 Uncharacterised protein family, carbohydrate kinase-related "; GO:0005515 NbS00022971g0006.1 protein AED:0.08 eAED:0.08 QI:148|0.5|0.66|1|0.5|0.33|3|215|266; (*GB) gi|356499538|ref|XP_003518596.1| (e_value=6e-125) PREDICTED: trans-2,3-enoyl-CoA reductase-like [Glycine max];; (*SWP) sp|Q55C17|TECR_DICDI (e_value=4e-22) Trans-2,3-enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1;; (*TAIR) AT5G16010.1 (e_value=2e-112) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr5:5227982-5229012 FORWARD LENGTH=268;; (*ITAG) Solyc11g006300.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1024921-1026890 transcript_region:SL2.40ch11:1024921..1026890- go_terms:GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 ***- D7M7I5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016021 NbS00022971g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.42|0.37|0.87|0.57|0.37|8|0|556; (*GB) gi|359485795|ref|XP_002271238.2| (e_value=6e-163) PREDICTED: uncharacterized protein LOC100247755 [Vitis vinifera];; (*SWP) sp|Q681K7|GEX1_ARATH (e_value=3e-122) Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1;; (*TAIR) AT5G55490.1 (e_value=2e-123) | Symbols: ATGEX1, GEX1 | gamete expressed protein 1 | chr5:22478822-22481071 REVERSE LENGTH=593;; (*ITAG) Solyc11g006310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1027550-1030800 transcript_region:SL2.40ch11:1027550..1030800- functional_description:"GEX1 (Fragment) (AHRD V1 ***- Q49L63_ARATH)"; NbS00032542g0014.1 protein AED:0.18 eAED:0.18 QI:0|0.73|0.75|0.93|0.66|0.62|16|904|635; (*GB) gi|359490406|ref|XP_002280266.2| (e_value=0.0) PREDICTED: ABC transporter B family member 28-like [Vitis vinifera];; (*SWP) sp|Q8LPQ6|AB28B_ARATH (e_value=0.0) ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1;; (*TAIR) AT4G25450.1 (e_value=0.0) | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein 8 | chr4:13009845-13013912 REVERSE LENGTH=714;; (*ITAG) Solyc03g026310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8122351-8133100 transcript_region:SL2.40ch03:8122351..8133100+ go_terms:GO:0046982 functional_description:"ABC transporter permease/ATP-binding protein (AHRD V1 ***- A6ANR0_VIBHA); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0046982 NbS00032542g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|12003384|gb|AAG43549.1|AF211531_1 (e_value=8e-125) Avr9/Cf-9 rapidly elicited protein 111B [Nicotiana tabacum];; (*SWP) sp|P93835|DRE1B_ARATH (e_value=2e-69) Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2;; (*TAIR) AT4G25490.1 (e_value=1e-70) | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding factor 1 | chr4:13021921-13022562 REVERSE LENGTH=213;; (*ITAG) Solyc03g026270.1.1 (e_value=3e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8091698-8092315 transcript_region:SL2.40ch03:8091698..8092315+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00032542g0015.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.75|1|1|1|4|450|486; (*GB) gi|21064945|gb|AAM29184.1| (e_value=0.0) CDPK-like protein [Solanum tuberosum];; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=7e-81) Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1;; (*TAIR) AT1G12580.1 (e_value=1e-175) | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase-related kinase 1 | chr1:4283635-4285675 FORWARD LENGTH=522;; (*ITAG) Solyc03g026340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8152768-8157216 transcript_region:SL2.40ch03:8152768..8157216- go_terms:GO:0004697 functional_description:"Calcium dependent protein kinase 17 (AHRD V1 *-** D8RHF3_SELML); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004697 NbS00032542g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.25|1|1|4|0|267; (*GB) gi|147775384|emb|CAN78184.1| (e_value=1e-64) hypothetical protein VITISV_031283 [Vitis vinifera];; (*SWP) sp|P62598|ARR12_ARATH (e_value=5e-36) Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2;; (*TAIR) AT2G25180.1 (e_value=4e-37) | Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596;; (*ITAG) Solyc07g019550.1.1 (e_value=8e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:12083412-12087199 transcript_region:SL2.40ch07:12083412..12087199+ go_terms:GO:0003700,GO:0042802 functional_description:"Response regulator 11 (AHRD V1 ***- Q0WRT0_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700,GO:0042802 NbS00032542g0002.1 protein AED:0.34 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|215; (*GB) gi|356559886|ref|XP_003548227.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100527109 [Glycine max];; (*TAIR) AT5G62140.1 (e_value=1e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:24954563-24955376 REVERSE LENGTH=241;; (*ITAG) Solyc03g026330.2.1 (e_value=9e-37) genomic_reference:SL2.40ch03 gene_region:8147602-8148451 transcript_region:SL2.40ch03:8147602..8148451- functional_description:"Uncharacterized conserved protein (AHRD V1 *-*- Q7VAI6_PROMA)"; NbC24900359g0002.1 protein AED:0.00 eAED:0.04 QI:12|-1|0|1|-1|1|1|0|97; (*GB) gi|224111794|ref|XP_002315981.1| (e_value=3e-49) ZIP transporter [Populus trichocarpa];; (*SWP) sp|Q75HB1|IRT1_ORYSJ (e_value=2e-42) Fe(2+) transport protein 1 OS=Oryza sativa subsp. japonica GN=IRT1 PE=2 SV=1;; (*TAIR) AT1G31260.1 (e_value=7e-41) | Symbols: ZIP10 | zinc transporter 10 precursor | chr1:11175559-11177362 REVERSE LENGTH=364;; (*ITAG) Solyc01g008580.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2673112-2673667 transcript_region:SL2.40ch01:2673112..2673667- go_terms:GO:0016020 functional_description:"Zinc transporter protein (AHRD V1 ***- D5LMF9_9FABA); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00061868g0004.1 protein AED:0.15 eAED:0.15 QI:160|1|1|1|1|1|2|271|520; (*GB) gi|85068600|gb|ABC69380.1| (e_value=0.0) CYP81C6v2 [Nicotiana tabacum];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=3e-122) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G10600.1 (e_value=5e-147) | Symbols: CYP81K2 | cytochrome P450, family 81, subfamily K, polypeptide 2 | chr5:3351227-3352777 FORWARD LENGTH=516;; (*ITAG) Solyc07g014670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5054129-5056662 transcript_region:SL2.40ch07:5054129..5056662+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00048141g0006.1 protein AED:0.09 eAED:0.19 QI:0|1|0.5|1|1|1|2|252|462; (*GB) gi|225458852|ref|XP_002283336.1| (e_value=0.0) PREDICTED: F-box protein At3g12350 [Vitis vinifera];; (*SWP) sp|Q84WW1|FB140_ARATH (e_value=5e-124) F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=2 SV=1;; (*TAIR) AT3G12350.1 (e_value=4e-125) | Symbols: | F-box family protein | chr3:3931626-3933104 FORWARD LENGTH=422; NbS00048141g0007.1 protein AED:0.10 eAED:0.10 QI:266|1|1|1|0.75|1|5|403|193; (*GB) gi|18565124|dbj|BAB84584.1| (e_value=6e-141) transcription factor LIM [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=8e-91) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=6e-116) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc04g077780.2.1 (e_value=9e-137) genomic_reference:SL2.40ch04 gene_region:60273625-60275883 transcript_region:SL2.40ch04:60273625..60275883- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00031423g0005.1 protein AED:0.12 eAED:0.17 QI:0|0|0.33|1|0|0.33|3|0|1026; (*GB) gi|255571000|ref|XP_002526451.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|O65440|BAME3_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3;; (*TAIR) AT4G20270.1 (e_value=0.0) | Symbols: BAM3 | Leucine-rich receptor-like protein kinase family protein | chr4:10949822-10952924 FORWARD LENGTH=992;; (*ITAG) Solyc01g103530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83882217-83886479 transcript_region:SL2.40ch01:83882217..83886479+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00059591g0002.1 protein AED:0.16 eAED:0.16 QI:351|1|1|1|1|1|2|533|138; (*GB) gi|255575997|ref|XP_002528894.1| (e_value=1e-44) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LSK9|Y5566_ARATH (e_value=7e-41) Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1;; (*TAIR) AT5G65660.1 (e_value=5e-42) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:26245444-26246245 REVERSE LENGTH=136;; (*ITAG) Solyc03g043740.2.1 (e_value=1e-68) genomic_reference:SL2.40ch03 gene_region:11235069-11236157 transcript_region:SL2.40ch03:11235069..11236157- functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 ***- A9YWR1_MEDTR)"; NbS00005959g0004.1 protein AED:0.15 eAED:0.15 QI:247|0.66|1|1|1|1|4|647|347; (*GB) gi|163838594|dbj|BAF95776.1| (e_value=2e-160) class 2 knotted1-like protein [Nicotiana tabacum];; (*SWP) sp|O22300|LET12_SOLLC (e_value=1e-115) Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1;; (*TAIR) AT5G25220.2 (e_value=8e-98) | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736208-8738087 FORWARD LENGTH=419;; (*ITAG) Solyc07g007120.2.1 (e_value=4e-117) genomic_reference:SL2.40ch07 gene_region:1876090-1882613 transcript_region:SL2.40ch07:1876090..1882613+ go_terms:GO:0005515 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 *-*- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00020625g0003.1 protein AED:0.01 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|224125414|ref|XP_002319580.1| (e_value=5e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT3G04960.4 (e_value=3e-44) | Symbols: | Domain of unknown function (DUF3444) | chr3:1373819-1375769 FORWARD LENGTH=553;; (*ITAG) Solyc10g007630.1.1 (e_value=7e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1921861-1923321 transcript_region:SL2.40ch10:1921861..1923321+ functional_description:"DNAJ heat shock N-terminal domain-containing protein (Fragment) (AHRD V1 *--- D7L312_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; NbS00020625g0011.1 protein AED:0.25 eAED:0.27 QI:193|0.80|0.72|1|0.61|0.68|22|0|927; (*GB) gi|225460119|ref|XP_002275612.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260107 [Vitis vinifera];; (*SWP) sp|O46606|DDHD1_BOVIN (e_value=3e-38) Phospholipase DDHD1 OS=Bos taurus GN=DDHD1 PE=1 SV=1;; (*TAIR) AT1G31480.1 (e_value=0.0) | Symbols: SGR2 | shoot gravitropism 2 (SGR2) | chr1:11266225-11271527 FORWARD LENGTH=933;; (*ITAG) Solyc01g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2428752-2446906 transcript_region:SL2.40ch01:2428752..2446906+ go_terms:GO:0008970 functional_description:"DDHD domain containing 1 (AHRD V1 *--- Q3ZAU5_RAT); contains Interpro domain(s) IPR004177 DDHD "; GO:0008970 NbS00031717g0006.1 protein AED:0.43 eAED:0.75 QI:77|0|0|1|0|0.5|2|0|35 NbS00031717g0005.1 protein AED:0.86 eAED:0.91 QI:0|0|0|1|0|0|2|0|157 NbS00031438g0001.1 protein AED:0.20 eAED:0.22 QI:0|1|1|1|1|1|2|131|150; (*GB) gi|225442022|ref|XP_002268705.1| (e_value=1e-64) PREDICTED: 17.4 kDa class III heat shock protein [Vitis vinifera];; (*SWP) sp|Q9SYG1|HS174_ARATH (e_value=2e-45) 17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1;; (*TAIR) AT1G54050.1 (e_value=1e-46) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20179558-20180122 REVERSE LENGTH=155;; (*ITAG) Solyc03g123540.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:64419768-64420397 transcript_region:SL2.40ch03:64419768..64420397- functional_description:"class II heat shock protein (AHRD V1 ***- B6U175_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00031438g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.76|0.83|1|0.82|0.88|18|515|587; (*GB) gi|225425426|ref|XP_002271582.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267642 [Vitis vinifera];; (*SWP) sp|Q5M7C8|HORM1_XENLA (e_value=2e-20) HORMA domain-containing protein 1 OS=Xenopus laevis GN=hormad1 PE=2 SV=1;; (*TAIR) AT1G67370.1 (e_value=0.0) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00031438g0011.1 protein AED:0.22 eAED:0.22 QI:23|1|1|1|0|0|2|59|81 NbS00027450g0008.1 protein AED:0.38 eAED:0.38 QI:220|0.66|1|1|1|1|4|201|229; (*GB) gi|225439426|ref|XP_002265093.1| (e_value=1e-105) PREDICTED: PHD finger protein ALFIN-LIKE 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FFF5|ALFL1_ARATH (e_value=3e-95) PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1;; (*TAIR) AT5G05610.2 (e_value=2e-96) | Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241;; (*ITAG) Solyc10g076690.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58957075-58963034 transcript_region:SL2.40ch10:58957075..58963034- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7LYZ0_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00027450g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0.33|0.33|1|1|3|89|103; (*ITAG) Solyc12g007000.1.1 (e_value=5e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1441098-1446514 transcript_region:SL2.40ch12:1441098..1446514+ functional_description:"POT family domain containing protein expressed (AHRD V1 *-*- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00001772g0014.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0.33|1|0|0|3|0|182; (*GB) gi|147773703|emb|CAN76460.1| (e_value=2e-31) hypothetical protein VITISV_010828 [Vitis vinifera];; (*SWP) sp|A4D998|BH075_ARATH (e_value=2e-23) Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1;; (*TAIR) AT1G25330.1 (e_value=2e-24) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:8880515-8882018 REVERSE LENGTH=223;; (*ITAG) Solyc04g007300.2.1 (e_value=1e-52) genomic_reference:SL2.40ch04 gene_region:1017255-1020092 transcript_region:SL2.40ch04:1017255..1020092- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00001772g0011.1 protein AED:0.10 eAED:0.21 QI:75|0.62|0.33|1|0.87|0.77|9|0|632; (*GB) gi|356570331|ref|XP_003553343.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100783299 [Glycine max];; (*TAIR) AT2G21720.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr2:9273696-9276802 FORWARD LENGTH=734;; (*ITAG) Solyc04g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1002835-1007848 transcript_region:SL2.40ch04:1002835..1007848- functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00001772g0009.1 protein AED:0.34 eAED:0.34 QI:0|1|0.8|1|1|1|5|313|261; (*GB) gi|300836828|gb|ADK38541.1| (e_value=3e-111) methylketone synthase IIa [Solanum lycopersicum];; (*TAIR) AT1G68260.1 (e_value=3e-79) | Symbols: | Thioesterase superfamily protein | chr1:25585976-25587601 REVERSE LENGTH=190;; (*ITAG) Solyc04g007260.2.1 (e_value=6e-114) genomic_reference:SL2.40ch04 gene_region:976114-981994 transcript_region:SL2.40ch04:976114..981994- go_terms:GO:0016291 functional_description:"Thioesterase superfamily (AHRD V1 *-** Q0YNY9_9CHLB); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00001772g0013.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0|2|0|121; (*ITAG) Solyc10g049530.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00022420g0003.1 protein AED:0.40 eAED:0.40 QI:68|0|0|1|0.5|0.33|3|0|155; (*GB) gi|255563991|ref|XP_002522995.1| (e_value=2e-23) hypothetical protein RCOM_0586940 [Ricinus communis];; (*TAIR) AT5G54850.1 (e_value=6e-18) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22280755-22281363 REVERSE LENGTH=202;; (*ITAG) Solyc07g064320.1.1 (e_value=1e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63742864-63743364 transcript_region:SL2.40ch07:63742864..63743364- functional_description:"Unknown Protein (AHRD V1)"; NbS00052721g0003.1 protein AED:0.17 eAED:0.21 QI:472|0.37|0.44|0.88|0.62|0.77|9|675|110; (*GB) gi|255551645|ref|XP_002516868.1| (e_value=2e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G39080.1 (e_value=7e-25) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:16309981-16312475 REVERSE LENGTH=351;; (*ITAG) Solyc01g067630.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:68864386-68867016 transcript_region:SL2.40ch01:68864386..68867016- functional_description:"MRNA complete cds clone RAFL24-13-K22 (AHRD V1 ***- Q67YQ9_ARATH)"; NbS00032866g0003.1 protein AED:0.18 eAED:0.18 QI:228|1|0.84|1|1|1|13|426|551; (*GB) gi|75338883|sp|Q9ZR39.1|U2A2A_NICPL (e_value=0.0) RecName: Full=Splicing factor U2af large subunit A; AltName: Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa subunit A; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit A; Short=U2 snRNP auxiliary factor large subunit A;; (*SWP) sp|Q9ZR39|U2A2A_NICPL (e_value=0.0) Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1;; (*TAIR) AT4G36690.4 (e_value=0.0) | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294139-17297609 REVERSE LENGTH=551;; (*ITAG) Solyc02g085570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42978856-42984886 transcript_region:SL2.40ch02:42978856..42984886+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00026857g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|385; (*GB) gi|167600643|gb|ABZ89185.1| (e_value=1e-158) putative protein [Coffea canephora];; (*TAIR) AT3G04550.1 (e_value=8e-125) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:1225961-1227310 FORWARD LENGTH=449;; (*ITAG) Solyc11g006060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:860023-861378 transcript_region:SL2.40ch11:860023..861378+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00S02_OSTTA)"; NbS00026857g0013.1 protein AED:0.00 eAED:0.00 QI:42|1|1|1|1|1|2|329|204; (*GB) gi|255561905|ref|XP_002521961.1| (e_value=2e-92) cyclophilin, putative [Ricinus communis];; (*SWP) sp|Q38867|CP19C_ARATH (e_value=2e-86) Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2;; (*TAIR) AT3G56070.2 (e_value=2e-87) | Symbols: ROC2 | rotamase cyclophilin 2 | chr3:20806987-20807517 REVERSE LENGTH=176;; (*ITAG) Solyc11g006070.1.1 (e_value=8e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:861867-862328 transcript_region:SL2.40ch11:861867..862328- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B5LWR0_ZIZJJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00026857g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.8|1|1|1|5|373|338; (*GB) gi|326367383|gb|ADZ55301.1| (e_value=7e-139) hypothetical protein MA17P03.8 [Coffea arabica];; (*TAIR) AT3G04560.1 (e_value=9e-114) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). | chr3:1227506-1229338 REVERSE LENGTH=417;; (*ITAG) Solyc11g006080.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:864350-870452 transcript_region:SL2.40ch11:864350..870452- functional_description:"Unknown Protein (AHRD V1)"; NbS00026857g0010.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|324|681; (*GB) gi|356527538|ref|XP_003532366.1| (e_value=2e-109) PREDICTED: filament-like plant protein 3-like [Glycine max];; (*SWP) sp|Q8LLE5|FPP_SOLLC (e_value=3e-77) Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1;; (*TAIR) AT3G05270.2 (e_value=5e-78) | Symbols: | Plant protein of unknown function (DUF869) | chr3:1500803-1502926 REVERSE LENGTH=615;; (*ITAG) Solyc12g068070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:54518644-54522087 transcript_region:SL2.40ch12:54518644..54522087- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00034785g0006.1 protein AED:0.18 eAED:0.22 QI:0|0.66|0.5|1|0.33|0.75|4|291|243; (*GB) gi|359487818|ref|XP_002277092.2| (e_value=4e-25) PREDICTED: MKI67 FHA domain-interacting nucleolar phosphoprotein-like [Vitis vinifera];; (*TAIR) AT5G04600.1 (e_value=3e-19) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222;; (*ITAG) Solyc06g074720.2.1 (e_value=4e-26) genomic_reference:SL2.40ch06 gene_region:42639045-42643117 transcript_region:SL2.40ch06:42639045..42643117+ go_terms:GO:0005515,GO:0003723 functional_description:"MKI67 FHA domain-interacting nucleolar phosphoprotein-like (AHRD V1 **-- B6THB2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00041844g0014.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|3|584|173; (*GB) gi|255541992|ref|XP_002512060.1| (e_value=2e-94) glycine-rich RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9QZH3|PPIE_MOUSE (e_value=1e-33) Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2;; (*TAIR) AT1G13690.1 (e_value=1e-90) | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 FORWARD LENGTH=177;; (*ITAG) Solyc04g005350.2.1 (e_value=4e-105) genomic_reference:SL2.40ch04 gene_region:253441-256670 transcript_region:SL2.40ch04:253441..256670- go_terms:GO:0003676,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase E (AHRD V1 **-- B4FJP1_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00041844g0016.1 protein AED:0.07 eAED:0.07 QI:157|1|1|1|1|1|5|298|386; (*GB) gi|224077736|ref|XP_002305386.1| (e_value=1e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=2e-92) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT1G26360.1 (e_value=1e-134) | Symbols: ATMES13, MES13 | methyl esterase 13 | chr1:9119021-9121203 REVERSE LENGTH=444;; (*ITAG) Solyc05g012180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5446238-5449535 transcript_region:SL2.40ch05:5446238..5449535- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00041844g0015.1 protein AED:0.23 eAED:0.23 QI:69|1|0.66|1|0.5|1|3|0|266; (*GB) gi|255541996|ref|XP_002512062.1| (e_value=8e-151) 6-phosphogluconolactonase, putative [Ricinus communis];; (*SWP) sp|Q6Z4H0|6PGL2_ORYSJ (e_value=3e-122) Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=1e-121) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc01g010250.2.1 (e_value=6e-173) genomic_reference:SL2.40ch01 gene_region:5033711-5037078 transcript_region:SL2.40ch01:5033711..5037078- go_terms:GO:0006098,GO:0005975 functional_description:"6-phosphogluconolactonase (AHRD V1 ***- B6U0H2_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0006098,GO:0005975 NbS00041844g0002.1 protein AED:0.56 eAED:0.56 QI:0|0|0.5|0.5|1|1|2|0|107; (*ITAG) Solyc01g010270.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:5062742-5065710 transcript_region:SL2.40ch01:5062742..5065710- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00013183g0009.1 protein AED:0.02 eAED:0.02 QI:267|1|1|1|1|1|2|329|99; (*GB) gi|170507|gb|AAA34193.1| (e_value=1e-42) ORF [Solanum lycopersicum];; (*SWP) sp|P32292|ARG2_VIGRR (e_value=8e-20) Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1;; (*TAIR) AT4G02380.1 (e_value=9e-25) | Symbols: SAG21, AtLEA5 | senescence-associated gene 21 | chr4:1046414-1046807 REVERSE LENGTH=97;; (*ITAG) Solyc09g075210.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:62481770-62483310 transcript_region:SL2.40ch09:62481770..62483310+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant protein 5 (AHRD V1 ***- Q1HGG0_9ROSI); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 "; GO:0006950 NbS00013183g0010.1 protein AED:0.17 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|375|202; (*GB) gi|225437416|ref|XP_002271045.1| (e_value=5e-69) PREDICTED: uncharacterized protein LOC100265898 [Vitis vinifera];; (*TAIR) AT4G02370.1 (e_value=8e-62) | Symbols: | Protein of unknown function, DUF538 | chr4:1042458-1042961 FORWARD LENGTH=167;; (*ITAG) Solyc09g075220.1.1 (e_value=9e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62491051-62491602 transcript_region:SL2.40ch09:62491051..62491602- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00027751g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|224077184|ref|XP_002305168.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67050.1 (e_value=1e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264;; (*ITAG) Solyc02g063230.1.1 (e_value=9e-87) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29870430-29871206 transcript_region:SL2.40ch02:29870430..29871206+ functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00004671g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|126; (*GB) gi|356522428|ref|XP_003529848.1| (e_value=2e-45) PREDICTED: acyl carrier protein 1, chloroplastic-like [Glycine max];; (*SWP) sp|P52414|ACP4_CUPLA (e_value=1e-24) Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1;; (*TAIR) AT1G54630.1 (e_value=3e-24) | Symbols: ACP3 | acyl carrier protein 3 | chr1:20401642-20402919 REVERSE LENGTH=136;; (*ITAG) Solyc02g038720.1.1 (e_value=5e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22146777-22147652 transcript_region:SL2.40ch02:22146777..22147652- go_terms:GO:0006633,GO:0000036,GO:0048037 functional_description:"Acyl carrier protein (AHRD V1 ***- B9RR02_RICCO); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0000036,GO:0048037 NbS00004671g0002.1 protein AED:0.15 eAED:0.15 QI:230|0.6|0.5|1|0.8|0.66|6|0|561; (*GB) gi|225461570|ref|XP_002282857.1| (e_value=4e-115) PREDICTED: protein transport protein Sec24-like At3g07100-like [Vitis vinifera];; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=3e-77) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2;; (*TAIR) AT3G07100.1 (e_value=2e-78) | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein transport family protein | chr3:2245689-2250077 REVERSE LENGTH=1038;; (*ITAG) Solyc02g082220.2.1 (e_value=3e-159) genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00012723g0006.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|305; (*GB) gi|253796258|gb|ACT35733.1| (e_value=5e-39) SLF-interacting SKP1 [Petunia x hybrida];; (*SWP) sp|O49484|ASK11_ARATH (e_value=2e-30) SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1;; (*TAIR) AT4G34210.1 (e_value=2e-31) | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461 FORWARD LENGTH=152;; (*ITAG) Solyc11g008400.1.1 (e_value=6e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00049486g0004.1 protein AED:0.21 eAED:0.21 QI:240|1|1|1|0.83|1|7|595|228; (*GB) gi|224136778|ref|XP_002322413.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVA7|ICLN_ARATH (e_value=7e-77) Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana GN=At5g62290 PE=2 SV=1;; (*TAIR) AT5G62290.2 (e_value=2e-78) | Symbols: | nucleotide-sensitive chloride conductance regulator (ICln) family protein | chr5:25019568-25020972 FORWARD LENGTH=228;; (*ITAG) Solyc03g083540.2.1 (e_value=4e-122) genomic_reference:SL2.40ch03 gene_region:47028518-47035641 transcript_region:SL2.40ch03:47028518..47035641+ go_terms:GO:0005216 functional_description:"Methylosome subunit pICln (AHRD V1 ***- B4FU22_MAIZE); contains Interpro domain(s) IPR003521 Nucleotide-sensitive chloride conductance regulator "; GO:0005216 NbS00005848g0010.1 protein AED:0.15 eAED:0.16 QI:321|1|0.8|1|1|1|5|0|742; (*GB) gi|255548495|ref|XP_002515304.1| (e_value=0.0) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT1G02660.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:572187-574746 REVERSE LENGTH=713;; (*ITAG) Solyc01g079600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71215157-71218914 transcript_region:SL2.40ch01:71215157..71218914- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- C1FIH0_9CHLO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00005848g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|359477543|ref|XP_002279112.2| (e_value=2e-21) PREDICTED: protein RDM1 [Vitis vinifera];; (*SWP) sp|Q9LUJ3|RDM1_ARATH (e_value=2e-18) Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1;; (*TAIR) AT3G22680.1 (e_value=2e-19) | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1 | chr3:8019785-8020374 FORWARD LENGTH=163;; (*ITAG) Solyc10g045190.1.1 (e_value=4e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27598984-27599343 transcript_region:SL2.40ch10:27598984..27599343- go_terms:GO:0043621 functional_description:"Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950 "; GO:0043621 NbS00009160g0012.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.85|0.87|8|263|507; (*GB) gi|193290668|gb|ACF17642.1| (e_value=0.0) putative branched-chain alpha-keto acid dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|P11182|ODB2_HUMAN (e_value=2e-101) Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DBT PE=1 SV=3;; (*TAIR) AT3G06850.2 (e_value=0.0) | Symbols: BCE2, LTA1, DIN3 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:2158212-2160465 REVERSE LENGTH=483;; (*ITAG) Solyc01g066520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:66918875-66925201 transcript_region:SL2.40ch01:66918875..66925201- go_terms:GO:0046949,GO:0008152 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- C3BP76_9BACI); contains Interpro domain(s) IPR015761 Lipoamide Acyltransferase "; GO:0046949,GO:0008152 NbS00009160g0002.1 protein AED:0.25 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|147792120|emb|CAN68577.1| (e_value=2e-89) hypothetical protein VITISV_019282 [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=5e-21) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT5G49130.1 (e_value=2e-79) | Symbols: | MATE efflux family protein | chr5:19915904-19917525 FORWARD LENGTH=502;; (*ITAG) Solyc01g066560.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:67007789-67012094 transcript_region:SL2.40ch01:67007789..67012094+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00009160g0001.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|225431762|ref|XP_002270564.1| (e_value=4e-101) PREDICTED: multidrug and toxin extrusion protein 1 [Vitis vinifera];; (*SWP) sp|Q10085|YAO6_SCHPO (e_value=1e-25) Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=2 SV=1;; (*TAIR) AT5G49130.1 (e_value=3e-85) | Symbols: | MATE efflux family protein | chr5:19915904-19917525 FORWARD LENGTH=502;; (*ITAG) Solyc01g066560.2.1 (e_value=3e-134) genomic_reference:SL2.40ch01 gene_region:67007789-67012094 transcript_region:SL2.40ch01:67007789..67012094+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00009160g0008.1 protein AED:0.28 eAED:0.51 QI:0|0|0|0.33|1|1|3|0|116; (*GB) gi|224102153|ref|XP_002312568.1| (e_value=6e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14660.1 (e_value=1e-23) | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178;; (*ITAG) Solyc06g033910.1.1 (e_value=9e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20101017-20101298 transcript_region:SL2.40ch06:20101017..20101298+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit RPB7 (AHRD V1 ***- C3KIZ3_ANOFI); contains Interpro domain(s) IPR005576 RNA polymerase Rpb7, N-terminal "; GO:0006350 NbS00052583g0001.1 protein AED:0.02 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|224085266|ref|XP_002307528.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT5G36120.1 (e_value=1e-43) | Symbols: CCB3, YLMG3, atylmg3 | cofactor assembly, complex C (B6F) | chr5:14198679-14199203 REVERSE LENGTH=174;; (*ITAG) Solyc02g021000.2.1 (e_value=9e-69) genomic_reference:SL2.40ch02 gene_region:11977400-11978995 transcript_region:SL2.40ch02:11977400..11978995- go_terms:GO:0016020 functional_description:"YGGT family conserved hypothetical integral membrane protein (AHRD V1 *-*- A4CQQ7_SYNPV); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00022622g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|66; (*GB) gi|125584853|gb|EAZ25517.1| (e_value=7e-20) hypothetical protein OsJ_09341 [Oryza sativa Japonica Group];; (*SWP) sp|Q9XEK8|RL23_TORRU (e_value=2e-21) 60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1;; (*TAIR) AT3G04400.1 (e_value=8e-22) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=3e-22) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00022622g0004.1 protein AED:0.10 eAED:0.10 QI:169|1|1|1|0.93|1|16|358|925; (*GB) gi|359485610|ref|XP_002269303.2| (e_value=0.0) PREDICTED: ATP-dependent helicase rhp16-like [Vitis vinifera];; (*SWP) sp|P79051|RHP16_SCHPO (e_value=1e-149) ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=2 SV=2;; (*TAIR) AT1G05120.1 (e_value=0.0) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc05g044480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:55714270-55722184 transcript_region:SL2.40ch05:55714270..55722184- go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--* CHD3_DROME); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00001918g0022.1 protein AED:0.07 eAED:0.07 QI:12|0.5|0.66|1|1|0.88|9|0|832; (*GB) gi|297735902|emb|CBI18678.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7Y208|GLPQ3_ARATH (e_value=1e-140) Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2;; (*TAIR) AT5G58170.1 (e_value=0.0) | Symbols: SVL5 | SHV3-like 5 | chr5:23540261-23543092 REVERSE LENGTH=750;; (*ITAG) Solyc02g014530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:8136473-8141167 transcript_region:SL2.40ch02:8136473..8141167+ go_terms:GO:0016301 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7MPL3_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0016301 NbS00001918g0021.1 protein AED:0.08 eAED:0.08 QI:0|0.94|0.85|0.95|0.63|0.55|20|869|1516; (*GB) gi|359494891|ref|XP_002265146.2| (e_value=0.0) PREDICTED: formin-like protein 13-like [Vitis vinifera];; (*SWP) sp|Q9LVN1|FH13_ARATH (e_value=0.0) Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=3;; (*TAIR) AT5G58160.1 (e_value=0.0) | Symbols: | actin binding | chr5:23533724-23539465 FORWARD LENGTH=1324;; (*ITAG) Solyc07g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:392429-397495 transcript_region:SL2.40ch07:392429..397495- functional_description:"Formin 2B (AHRD V1 **-- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00001918g0019.1 protein AED:0.22 eAED:0.22 QI:0|0.87|0.88|1|0|0.11|9|53|524; (*GB) gi|224142397|ref|XP_002324545.1| (e_value=2e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56X72|RTNLS_ARATH (e_value=9e-88) Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2;; (*TAIR) AT5G58000.1 (e_value=7e-89) | Symbols: | Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487;; (*ITAG) Solyc07g005470.2.1 (e_value=4e-142) genomic_reference:SL2.40ch07 gene_region:374914-379875 transcript_region:SL2.40ch07:374914..379875- go_terms:GO:0005783 functional_description:"Reticulon-like protein B21 (AHRD V1 *-*- RTNLS_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00001918g0020.1 protein AED:0.38 eAED:0.38 QI:0|0.62|0.44|0.88|0.5|0.55|9|0|548; (*GB) gi|255570505|ref|XP_002526210.1| (e_value=8e-173) RNA polymerase II ctd phosphatase, putative [Ricinus communis];; (*SWP) sp|Q00IB6|CPL4_ARATH (e_value=4e-145) RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1;; (*TAIR) AT5G58003.1 (e_value=3e-146) | Symbols: CPL4 | C-terminal domain phosphatase-like 4 | chr5:23480066-23481924 FORWARD LENGTH=440;; (*ITAG) Solyc07g005450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:356410-364419 transcript_region:SL2.40ch07:356410..364419- go_terms:GO:0008022 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 4 (AHRD V1 ***- CPL4_ARATH); contains Interpro domain(s) IPR011947 FCP1-like phosphatase, phosphatase domain "; GO:0008022 NbS00042234g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|300079016|gb|ADJ67439.1| (e_value=6e-73) ethylene response factor 10 [Actinidia deliciosa];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=6e-56) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=5e-57) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc09g066360.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:60391559-60392140 transcript_region:SL2.40ch09:60391559..60392140+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 **** B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00016384g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|1|1|4|258|286; (*GB) gi|584711|sp|Q08507.1|ACCO3_PETHY (e_value=3e-166) RecName: Full=1-aminocyclopropane-1-carboxylate oxidase 3; Short=ACC oxidase 3; AltName: Full=Ethylene-forming enzyme; Short=EFE;; (*SWP) sp|Q08507|ACCO3_PETHY (e_value=8e-168) 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1;; (*TAIR) AT1G05010.1 (e_value=8e-136) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc07g049530.2.1 (e_value=2e-166) genomic_reference:SL2.40ch07 gene_region:57154220-57156391 transcript_region:SL2.40ch07:57154220..57156391+ go_terms:GO:0005507 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q94F66_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0005507 NbS00015151g0012.1 protein AED:0.10 eAED:0.10 QI:75|1|1|1|1|1|3|188|124; (*GB) gi|27529824|dbj|BAC53927.1| (e_value=8e-21) hypothetical protein [Nicotiana tabacum];; (*ITAG) Solyc01g009660.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3897377-3899846 transcript_region:SL2.40ch01:3897377..3899846- functional_description:"Low-temperature-induced 65 kDa protein (AHRD V1 *-*- LTI65_ARATH)"; NbS00015151g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|255584436|ref|XP_002532949.1| (e_value=3e-59) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G53860.1 (e_value=7e-30) | Symbols: | Remorin family protein | chr1:20107165-20109458 REVERSE LENGTH=442;; (*ITAG) Solyc03g123590.2.1 (e_value=1e-76) genomic_reference:SL2.40ch03 gene_region:64452687-64455651 transcript_region:SL2.40ch03:64452687..64455651+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KLC3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00015151g0014.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|278; (*GB) gi|225470163|ref|XP_002267853.1| (e_value=1e-75) PREDICTED: transcription factor LAF1 [Vitis vinifera];; (*SWP) sp|Q9M0K4|LAF1_ARATH (e_value=6e-56) Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2;; (*TAIR) AT5G52260.1 (e_value=9e-59) | Symbols: AtMYB19, MYB19 | myb domain protein 19 | chr5:21220165-21221223 FORWARD LENGTH=268;; (*ITAG) Solyc03g025870.2.1 (e_value=1e-99) genomic_reference:SL2.40ch03 gene_region:7636896-7639652 transcript_region:SL2.40ch03:7636896..7639652- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00015151g0013.1 protein AED:0.19 eAED:0.26 QI:0|0.5|0.33|1|1|1|3|359|137; (*GB) gi|22857914|gb|AAL91667.1| (e_value=4e-71) pollen specific actin-depolymerizing factor 2 [Nicotiana tabacum];; (*SWP) sp|Q67ZM4|ADF7_ARATH (e_value=7e-68) Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1;; (*TAIR) AT4G25590.1 (e_value=5e-69) | Symbols: ADF7 | actin depolymerizing factor 7 | chr4:13059137-13060050 REVERSE LENGTH=137;; (*ITAG) Solyc06g035980.2.1 (e_value=4e-70) genomic_reference:SL2.40ch06 gene_region:22031465-22032402 transcript_region:SL2.40ch06:22031465..22032402+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00015151g0006.1 protein AED:0.61 eAED:0.61 QI:53|0|0.25|0.25|1|1|4|0|60 NbS00014718g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.55|0.5|1|0.55|0.4|10|0|705; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=5e-60) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc11g071640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52141513-52144602 transcript_region:SL2.40ch11:52141513..52144602+ go_terms:GO:0008810 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0008810 NbS00048685g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|338190111|gb|AEI84329.1| (e_value=9e-137) lectin-domain receptor-like kinase [Nicotiana attenuata];; (*SWP) sp|O65238|Y5537_ARATH (e_value=3e-28) G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2;; (*TAIR) AT1G78830.1 (e_value=2e-31) | Symbols: | Curculin-like (mannose-binding) lectin family protein | chr1:29637141-29638508 REVERSE LENGTH=455;; (*ITAG) Solyc07g055690.1.1 (e_value=4e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60956155-60957501 transcript_region:SL2.40ch07:60956155..60957501- go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein S6 (AHRD V1 **-- SLSG6_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00019553g0004.1 protein AED:0.18 eAED:0.32 QI:20|0.5|0|1|0|0.4|5|0|407; (*GB) gi|359483559|ref|XP_003632975.1| (e_value=3e-135) PREDICTED: probable peptide/nitrate transporter At1g27040-like [Vitis vinifera];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=2e-61) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=2e-62) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc03g005950.1.1 (e_value=2e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:636645-641392 transcript_region:SL2.40ch03:636645..641392- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **** A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00019553g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|64; (*ITAG) Solyc03g005950.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:636645-641392 transcript_region:SL2.40ch03:636645..641392- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **** A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00026200g0007.1 protein AED:0.02 eAED:0.02 QI:245|0.9|0.90|1|0.5|0.72|11|305|298; (*GB) gi|297736703|emb|CBI25739.3| (e_value=8e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q00472|PNPP_SCHPO (e_value=4e-48) 4-nitrophenylphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pho2 PE=2 SV=2;; (*TAIR) AT5G47760.1 (e_value=4e-138) | Symbols: PGLP2, ATPGLP2, ATPK5 | 2-phosphoglycolate phosphatase 2 | chr5:19343121-19344979 REVERSE LENGTH=301;; (*ITAG) Solyc04g015150.2.1 (e_value=5e-165) genomic_reference:SL2.40ch04 gene_region:5322712-5328505 transcript_region:SL2.40ch04:5322712..5328505- go_terms:GO:0008967,GO:0003869 functional_description:"Phosphoglycolate phosphatase (AHRD V1 **-* C1FHY2_9CHLO); contains Interpro domain(s) IPR006349 2-phosphoglycolate phosphatase, eukaryotic "; GO:0008967,GO:0003869 NbS00026200g0010.1 protein AED:0.09 eAED:0.09 QI:605|1|1|1|0.75|0.77|9|407|1052; (*GB) gi|359495634|ref|XP_002264782.2| (e_value=0.0) PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera];; (*SWP) sp|Q9ZVT9|C2GR1_ARATH (e_value=0.0) C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4;; (*TAIR) AT1G03370.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding and GRAM domain containing protein | chr1:830968-834996 FORWARD LENGTH=1020;; (*ITAG) Solyc04g015160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5339830-5347460 transcript_region:SL2.40ch04:5339830..5347460+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KCE5_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbC25673618g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|359494299|ref|XP_002264079.2| (e_value=6e-80) PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-78) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G48310.1 (e_value=3e-47) | Symbols: CYP71A22 | cytochrome P450, family 71, subfamily A, polypeptide 22 | chr3:17888192-17889749 FORWARD LENGTH=490;; (*ITAG) Solyc09g066400.1.1 (e_value=3e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60410637-60412223 transcript_region:SL2.40ch09:60410637..60412223- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00025557g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|225446291|ref|XP_002269790.1| (e_value=3e-79) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=4e-42) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT2G19070.1 (e_value=2e-70) | Symbols: SHT | spermidine hydroxycinnamoyl transferase | chr2:8260185-8261958 REVERSE LENGTH=451;; (*ITAG) Solyc07g015960.1.1 (e_value=4e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:6048054-6049409 transcript_region:SL2.40ch07:6048054..6049409- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9N329_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00025557g0011.1 protein AED:0.34 eAED:0.35 QI:12|0|0|1|0|0.5|2|0|333; (*GB) gi|225456335|ref|XP_002280125.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100249081 [Vitis vinifera];; (*TAIR) AT4G37100.1 (e_value=2e-20) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:17479173-17481863 REVERSE LENGTH=896;; (*ITAG) Solyc05g015480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10696907-10698635 transcript_region:SL2.40ch05:10696907..10698635+ functional_description:"Cysteine desulfurase (AHRD V1 *-*- C1GS28_PARBA)"; NbS00025557g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|225446291|ref|XP_002269790.1| (e_value=7e-51) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q9FI78|HCT_ARATH (e_value=1e-23) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Arabidopsis thaliana GN=HCT PE=2 SV=1;; (*TAIR) AT2G19070.1 (e_value=3e-47) | Symbols: SHT | spermidine hydroxycinnamoyl transferase | chr2:8260185-8261958 REVERSE LENGTH=451;; (*ITAG) Solyc07g015960.1.1 (e_value=5e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:6048054-6049409 transcript_region:SL2.40ch07:6048054..6049409- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9N329_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00025557g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.83|0.57|1|0.83|0.85|7|0|402; (*GB) gi|357445673|ref|XP_003593114.1| (e_value=2e-138) Auxin-induced protein 5NG4 [Medicago truncatula];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-54) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G25270.1 (e_value=8e-90) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:8857726-8859909 FORWARD LENGTH=355;; (*ITAG) Solyc07g015910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5698053-5705955 transcript_region:SL2.40ch07:5698053..5705955+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00012520g0004.1 protein AED:0.11 eAED:0.11 QI:491|1|0.8|1|0.75|0.4|5|0|187; (*GB) gi|255537113|ref|XP_002509623.1| (e_value=1e-103) C-4 methyl sterol oxidase, putative [Ricinus communis];; (*SWP) sp|Q1EC69|SMO12_ARATH (e_value=7e-103) Methylsterol monooxygenase 1-2 OS=Arabidopsis thaliana GN=SMO1-2 PE=2 SV=1;; (*TAIR) AT4G22756.1 (e_value=5e-104) | Symbols: SMO1-2, ATSMO1, ATSMO1-2, SMO1 | sterol C4-methyl oxidase 1-2 | chr4:11955124-11956695 REVERSE LENGTH=299;; (*ITAG) Solyc08g079570.2.1 (e_value=4e-117) genomic_reference:SL2.40ch08 gene_region:60234534-60239239 transcript_region:SL2.40ch08:60234534..60239239- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00014604g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|225429161|ref|XP_002270964.1| (e_value=6e-80) PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=5e-52) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=4e-53) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=1e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00051841g0008.1 protein AED:0.21 eAED:0.21 QI:56|1|0.83|1|1|1|6|0|518; (*GB) gi|225461989|ref|XP_002267477.1| (e_value=8e-129) PREDICTED: coiled-coil domain-containing protein 22 [Vitis vinifera];; (*SWP) sp|P86182|CCD22_RAT (e_value=1e-22) Coiled-coil domain-containing protein 22 OS=Rattus norvegicus GN=Ccdc22 PE=1 SV=2;; (*TAIR) AT1G55830.2 (e_value=1e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF812 (InterPro:IPR008530). | chr1:20867918-20870205 REVERSE LENGTH=493;; (*ITAG) Solyc07g065760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64630403-64632896 transcript_region:SL2.40ch07:64630403..64632896- functional_description:"Coiled-coil domain-containing protein 22 (AHRD V1 *-*- C0H977_SALSA); contains Interpro domain(s) IPR008530 Protein of unknown function DUF812 "; NbS00037085g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|383|418; (*GB) gi|48209875|gb|AAT40481.1| (e_value=0.0) putative protein kinase [Solanum demissum];; (*SWP) sp|O49840|APK2B_ARATH (e_value=0.0) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=0.0) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc01g010660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5673997-5680626 transcript_region:SL2.40ch01:5673997..5680626+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00001416g0002.1 protein AED:0.17 eAED:0.20 QI:0|0.61|0.78|0.92|1|1|14|365|399; (*GB) gi|225458876|ref|XP_002285405.1| (e_value=0.0) PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Vitis vinifera];; (*SWP) sp|Q9SY55|ECA3_ARATH (e_value=0.0) Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3;; (*TAIR) AT1G10130.1 (e_value=0.0) | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998;; (*ITAG) Solyc07g022790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:21601277-21625035 transcript_region:SL2.40ch07:21601277..21625035+ go_terms:GO:0031490,GO:0005388 functional_description:"Calcium-transporting ATPase (AHRD V1 **** A8NHF4_COPC7); contains Interpro domain(s) IPR000695 ATPase, P-type, H+ transporting proton pump "; GO:0031490,GO:0005388 NbS00021409g0012.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|527; (*GB) gi|147861513|emb|CAN81469.1| (e_value=0.0) hypothetical protein VITISV_034857 [Vitis vinifera];; (*SWP) sp|Q84J37|LAC15_ARATH (e_value=0.0) Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1;; (*TAIR) AT5G48100.1 (e_value=0.0) | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol oxidase family protein | chr5:19489530-19492582 REVERSE LENGTH=565;; (*ITAG) Solyc12g056820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00021409g0013.1 protein AED:0.10 eAED:0.18 QI:0|0|0.33|1|1|1|3|0|273; (*GB) gi|224115540|ref|XP_002317059.1| (e_value=9e-91) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q84WP6|NAC43_ARATH (e_value=3e-86) NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2;; (*TAIR) AT2G46770.1 (e_value=2e-87) | Symbols: NST1, ANAC043 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr2:19220917-19222822 REVERSE LENGTH=365;; (*ITAG) Solyc08g008660.2.1 (e_value=1e-104) genomic_reference:SL2.40ch08 gene_region:3025338-3026965 transcript_region:SL2.40ch08:3025338..3026965- go_terms:GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PDI0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563 NbS00021409g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|437; (*GB) gi|297805416|ref|XP_002870592.1| (e_value=0.0) hypothetical protein ARALYDRAFT_915976 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=5e-75) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G42090.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:16826830-16828149 FORWARD LENGTH=439;; (*ITAG) Solyc03g082440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45927948-45929270 transcript_region:SL2.40ch03:45927948..45929270- go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00021409g0011.1 protein AED:0.03 eAED:0.03 QI:153|0.75|1|1|0.25|0.2|5|404|213; (*GB) gi|356499600|ref|XP_003518626.1| (e_value=7e-57) PREDICTED: uncharacterized protein LOC100815863 [Glycine max];; (*TAIR) AT1G64680.1 (e_value=4e-51) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24036071-24037062 FORWARD LENGTH=250;; (*ITAG) Solyc08g008630.2.1 (e_value=9e-68) genomic_reference:SL2.40ch08 gene_region:3021327-3023012 transcript_region:SL2.40ch08:3021327..3023012+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)"; NbS00034749g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.8|0.66|1|1|1|6|0|288; (*GB) gi|297836694|ref|XP_002886229.1| (e_value=3e-105) hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q6DJ87|CC90B_XENTR (e_value=2e-19) Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis GN=ccdc90b PE=2 SV=2;; (*TAIR) AT2G16460.1 (e_value=1e-107) | Symbols: | Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230;; (*ITAG) Solyc10g054320.1.1 (e_value=2e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50711112-50717005 transcript_region:SL2.40ch10:50711112..50717005- go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00034749g0009.1 protein AED:0.22 eAED:0.25 QI:0|0.66|0.5|0.8|0.88|0.9|10|0|337; (*GB) gi|1389893|gb|AAB02945.1| (e_value=7e-160) squalene synthase [Nicotiana tabacum];; (*SWP) sp|P53800|FDFT_NICBE (e_value=1e-152) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=4e-134) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc10g054130.1.1 (e_value=2e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50138928-50144839 transcript_region:SL2.40ch10:50138928..50144839+ go_terms:GO:0009058,GO:0016021 functional_description:"Squalene synthase (AHRD V1 ***- Q9XF02_CAPAN); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0009058,GO:0016021 NbS00047736g0008.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|273; (*GB) gi|147856483|emb|CAN78634.1| (e_value=1e-57) hypothetical protein VITISV_013449 [Vitis vinifera];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=1e-44) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=4e-31) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g075640.2.1 (e_value=7e-48) genomic_reference:SL2.40ch08 gene_region:56943109-56946421 transcript_region:SL2.40ch08:56943109..56946421+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00047736g0007.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.33|3|0|176; (*GB) gi|255577491|ref|XP_002529624.1| (e_value=4e-44) leucine-rich repeat containing protein, putative [Ricinus communis];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=5e-35) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G14470.1 (e_value=6e-23) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g106410.1.1 (e_value=3e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00047736g0006.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|0|0|4|0|459; (*GB) gi|359495375|ref|XP_003634972.1| (e_value=2e-113) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera];; (*SWP) sp|Q7XA42|RGA1_SOLBU (e_value=5e-62) Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=2e-41) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc04g015630.2.1 (e_value=9e-68) genomic_reference:SL2.40ch04 gene_region:5927164-5929199 transcript_region:SL2.40ch04:5927164..5929199- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00012790g0006.1 protein AED:0.18 eAED:0.18 QI:242|1|1|1|0.94|0.94|18|405|491; (*GB) gi|255538660|ref|XP_002510395.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=0.0) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1;; (*TAIR) AT1G75220.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:28229412-28232606 REVERSE LENGTH=487;; (*ITAG) Solyc04g080460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62223478-62229568 transcript_region:SL2.40ch04:62223478..62229568- go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00012790g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|480; (*GB) gi|255538658|ref|XP_002510394.1| (e_value=0.0) acyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LN49|KCS4_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1;; (*TAIR) AT1G19440.1 (e_value=0.0) | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516;; (*ITAG) Solyc04g080450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbC24150629g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|224103801|ref|XP_002313198.1| (e_value=9e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g106710.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00043752g0006.1 protein AED:0.03 eAED:0.03 QI:211|1|0.75|1|1|0.75|4|32|612; (*GB) gi|359473103|ref|XP_002282444.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Vitis vinifera];; (*SWP) sp|Q9C9V6|Y1790_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1;; (*TAIR) AT1G67900.3 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:25467737-25469888 FORWARD LENGTH=631;; (*ITAG) Solyc05g013570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6847219-6849746 transcript_region:SL2.40ch05:6847219..6849746- go_terms:GO:0005515,GO:0009416 functional_description:"AT1G67900-like protein (Fragment) (AHRD V1 *--- D6PNV0_9BRAS); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00043752g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|447|397; (*GB) gi|225424663|ref|XP_002285541.1| (e_value=0.0) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*SWP) sp|Q02527|MGAT3_RAT (e_value=2e-15) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT1G12990.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392;; (*ITAG) Solyc02g093430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48877750-48880084 transcript_region:SL2.40ch02:48877750..48880084- go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7LPH9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00005259g0004.1 protein AED:0.25 eAED:0.25 QI:169|1|1|1|0.75|0.8|5|349|231; (*GB) gi|255547908|ref|XP_002515011.1| (e_value=5e-114) oligopeptidase, putative [Ricinus communis];; (*TAIR) AT1G67700.2 (e_value=2e-116) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:25374295-25375810 FORWARD LENGTH=231;; (*ITAG) Solyc05g014310.2.1 (e_value=5e-145) genomic_reference:SL2.40ch05 gene_region:8116107-8118432 transcript_region:SL2.40ch05:8116107..8118432- functional_description:"Metalloendopeptidase family-saccharolysin & thimet oligopeptidase (ISS) (AHRD V1 *-*- Q01G48_OSTTA)"; NbS00016501g0004.1 protein AED:0.04 eAED:0.04 QI:220|1|1|1|1|1|10|537|588; (*GB) gi|225452450|ref|XP_002274298.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252584 [Vitis vinifera];; (*SWP) sp|F4J117|LSF1_ARATH (e_value=0.0) Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1;; (*TAIR) AT3G01510.1 (e_value=0.0) | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682 REVERSE LENGTH=591;; (*ITAG) Solyc12g062250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49501289-49506485 transcript_region:SL2.40ch12:49501289..49506485+ go_terms:GO:0005515 functional_description:"5&apos-AMP-activated protein kinase beta-1 subunit (AHRD V1 *--- C6LYW2_GIALA); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0005515 NbS00023871g0001.1 protein AED:0.00 eAED:0.00 QI:0|0|0.5|1|0|0.5|2|469|486; (*GB) gi|356540081|ref|XP_003538519.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Glycine max];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=0.0) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=0.0) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc03g063150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:30757050-30759159 transcript_region:SL2.40ch03:30757050..30759159+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00023871g0003.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|1|1|2|0|491; (*GB) gi|359476777|ref|XP_002278837.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera];; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=6e-94) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=5e-95) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc03g063160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:30760612-30762462 transcript_region:SL2.40ch03:30760612..30762462- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00036783g0005.1 protein AED:0.30 eAED:0.30 QI:78|0.85|0.75|1|0.85|0.75|8|0|398; (*GB) gi|297742485|emb|CBI34634.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CAI3|CADH1_ARATH (e_value=0.0) Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G72680.1 (e_value=0.0) | Symbols: ATCAD1, CAD1 | cinnamyl-alcohol dehydrogenase | chr1:27359346-27360876 REVERSE LENGTH=355;; (*ITAG) Solyc12g055820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47174026-47180464 transcript_region:SL2.40ch12:47174026..47180464- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** B3TM03_ELAGV); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00021004g0004.1 protein AED:0.18 eAED:0.18 QI:187|1|0.8|1|1|1|5|0|320; (*GB) gi|255582681|ref|XP_002532119.1| (e_value=3e-133) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P73555|Y875_SYNY3 (e_value=3e-46) Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1;; (*TAIR) AT1G78620.1 (e_value=4e-126) | Symbols: | Protein of unknown function DUF92, transmembrane | chr1:29573862-29575758 REVERSE LENGTH=333;; (*ITAG) Solyc07g062180.2.1 (e_value=3e-179) genomic_reference:SL2.40ch07 gene_region:62209162-62213598 transcript_region:SL2.40ch07:62209162..62213598- functional_description:"Predicted membrane protein (AHRD V1 ***- A2C1C4_PROM1); contains Interpro domain(s) IPR002794 Protein of unknown function DUF92, transmembrane "; NbC25903803g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|225461494|ref|XP_002282547.1| (e_value=1e-23) PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera];; (*SWP) sp|Q9LUH2|ALF5_ARATH (e_value=5e-19) MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1;; (*TAIR) AT3G23560.1 (e_value=4e-20) | Symbols: ALF5 | MATE efflux family protein | chr3:8454361-8456588 REVERSE LENGTH=477;; (*ITAG) Solyc10g007100.2.1 (e_value=1e-34) genomic_reference:SL2.40ch10 gene_region:1487632-1491802 transcript_region:SL2.40ch10:1487632..1491802- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbC25715430g0001.1 protein AED:0.00 eAED:0.00 QI:909|-1|0|1|-1|1|1|366|46 NbS00004411g0020.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc11g063480.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0035.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|2|0|151; (*ITAG) Solyc00g020020.2.1 (e_value=1e-40) genomic_reference:SL2.40ch00 gene_region:11807384-11808467 transcript_region:SL2.40ch00:11807384..11808467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0054.1 protein AED:0.15 eAED:0.32 QI:0|0|0|1|1|1|2|0|194; (*GB) gi|57013958|ref|YP_173430.1| (e_value=2e-46) hypothetical protein NitaMp091 [Nicotiana tabacum]; NbS00004411g0018.1 protein AED:0.34 eAED:0.35 QI:148|1|0.5|1|0|0|2|0|150; (*GB) gi|197132176|gb|ACH47606.1| (e_value=2e-72) photosystem I P700 apoprotein A1 [Pelargonium cotyledonis];; (*SWP) sp|Q09X17|PSAA_MORIN (e_value=2e-73) Photosystem I P700 chlorophyll a apoprotein A1 OS=Morus indica GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=6e-74) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc09g015340.1.1 (e_value=6e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8549610-8552077 transcript_region:SL2.40ch09:8549610..8552077+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- C3UNX2_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00004411g0006.1 protein AED:0.34 eAED:0.50 QI:0|0|0|0.66|1|1|3|0|102; (*ITAG) Solyc12g038990.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37195052-37195508 transcript_region:SL2.40ch12:37195052..37195508- functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0047.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|85 NbS00004411g0026.1 protein AED:0.16 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|121; (*GB) gi|359494218|ref|XP_002267511.2| (e_value=1e-42) PREDICTED: ABC transporter G family member 26-like [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=3e-27) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=2e-28) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=5e-66) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00004411g0086.1 protein AED:0.14 eAED:0.23 QI:10|0.2|0.16|1|0|0|6|0|434; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=6e-150) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=2e-151) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-144) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=1e-152) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00004411g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=3e-57) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-58) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-57) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=7e-60) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00004411g0010.1 protein AED:0.45 eAED:0.74 QI:0|0|0|0.83|1|1|6|507|108; (*GB) gi|57013956|ref|YP_173428.1| (e_value=4e-29) hypothetical protein NitaMp089 [Nicotiana tabacum];; (*ITAG) Solyc07g065770.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00004411g0079.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0|0|5|0|497; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=1e-118) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=3e-120) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=6e-115) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-121) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00004411g0087.1 protein AED:0.36 eAED:0.40 QI:0|0|0|1|0|0|4|0|394; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=7e-110) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-86) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=1e-106) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=9e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00004411g0068.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|187; (*GB) gi|57013957|ref|YP_173429.1| (e_value=2e-68) hypothetical protein NitaMp090 [Nicotiana tabacum]; NbS00004411g0090.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|3|0|169; (*GB) gi|372861951|gb|AEX98100.1| (e_value=5e-20) NADH dehydrogenase subunit 2, partial (mitochondrion) [Ferrocalamus rimosivaginus];; (*SWP) sp|P93401|NU2M_OENBE (e_value=4e-20) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=9e-20) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g063510.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:31980796-31981664 transcript_region:SL2.40ch03:31980796..31981664- functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0072.1 protein AED:0.14 eAED:0.37 QI:0|0|0|1|0|0|4|0|162; (*ITAG) Solyc00g020020.2.1 (e_value=1e-44) genomic_reference:SL2.40ch00 gene_region:11807384-11808467 transcript_region:SL2.40ch00:11807384..11808467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0089.1 protein AED:0.45 eAED:0.76 QI:0|0|0|1|0|0|2|0|139; (*GB) gi|147841236|emb|CAN64512.1| (e_value=5e-32) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|P15688|NU2M_BETVU (e_value=1e-19) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) Solyc10g062040.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605388-54605612 transcript_region:SL2.40ch10:54605388..54605612+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00004411g0088.1 protein AED:0.40 eAED:0.51 QI:0|0|0|1|0|0|3|456|127; (*GB) gi|3334858|emb|CAA63783.1| (e_value=8e-28) NADH dehydrogenase subunit II [Solanum tuberosum];; (*SWP) sp|P93401|NU2M_OENBE (e_value=1e-24) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=3e-24) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc10g062050.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605782-54606922 transcript_region:SL2.40ch10:54605782..54606922+ functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 *-*- B6VJT0_VITVI)"; NbS00004411g0085.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|3|0|125; (*GB) gi|197107555|gb|ACH42357.1| (e_value=3e-25) ribosomal protein L2 [Eschscholzia californica];; (*ITAG) Solyc00g022110.2.1 (e_value=2e-28) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00004411g0075.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|0|0|3|0|123; (*ITAG) Solyc11g063480.1.1 (e_value=5e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00004411g0092.1 protein AED:0.15 eAED:0.51 QI:0|0|0|1|0|0|2|0|114 NbS00004411g0083.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|57014013|ref|YP_173484.1| (e_value=4e-55) hypothetical protein NitaMp147 [Nicotiana tabacum];; (*ITAG) Solyc00g022100.1.1 (e_value=2e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00004411g0081.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|57014014|ref|YP_173485.1| (e_value=5e-29) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=3e-21) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=2e-22) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349; NbS00007922g0006.1 protein AED:0.20 eAED:0.23 QI:64|0.73|0.75|1|0.86|0.93|16|0|747; (*GB) gi|49523569|emb|CAF18246.1| (e_value=0.0) STY-L protein [Antirrhinum majus];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=7e-124) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.6 (e_value=0.0) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785;; (*ITAG) Solyc09g061290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54200071-54207040 transcript_region:SL2.40ch09:54200071..54207040- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002857g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|410; (*GB) gi|3402282|emb|CAA04449.1| (e_value=7e-77) proline-rich protein [Solanum tuberosum];; (*TAIR) AT4G38770.1 (e_value=2e-31) | Symbols: PRP4, ATPRP4 | proline-rich protein 4 | chr4:18097009-18098448 REVERSE LENGTH=448;; (*ITAG) Solyc10g054900.1.1 (e_value=4e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51531598-51532532 transcript_region:SL2.40ch10:51531598..51532532+ functional_description:"Proline-rich protein (AHRD V1 ***- Q9M6T7_NICGL); contains Interpro domain(s) IPR010616 Protein of unknown function DUF1210 "; NbS00002857g0010.1 protein AED:0.27 eAED:0.27 QI:7|1|0.87|1|0.85|0.87|8|335|258; (*GB) gi|225427923|ref|XP_002275216.1| (e_value=5e-112) PREDICTED: translocon-associated protein subunit alpha [Vitis vinifera];; (*SWP) sp|P45434|SSRA_ARATH (e_value=2e-74) Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3;; (*TAIR) AT2G16595.1 (e_value=6e-81) | Symbols: | Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251;; (*ITAG) Solyc01g111150.2.1 (e_value=4e-153) genomic_reference:SL2.40ch01 gene_region:89273982-89278444 transcript_region:SL2.40ch01:89273982..89278444+ go_terms:GO:0005048 functional_description:"Translocon-associated protein alpha subunit (AHRD V1 ***- B6SRQ1_MAIZE); contains Interpro domain(s) IPR005595 Translocon-associated protein (TRAP), alpha subunit "; GO:0005048 NbS00056650g0004.1 protein AED:0.16 eAED:0.16 QI:143|0.77|0.8|1|0.88|0.9|10|0|570; (*GB) gi|356572504|ref|XP_003554408.1| (e_value=0.0) PREDICTED: probable polyadenylate-binding protein At2g36660-like [Glycine max];; (*SWP) sp|Q9ZQA8|PABPX_ARATH (e_value=2e-87) Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1;; (*TAIR) AT2G36660.1 (e_value=2e-88) | Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609;; (*ITAG) Solyc10g085750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64151047-64155955 transcript_region:SL2.40ch10:64151047..64155955- go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 ***- Q6DF12_XENTR); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00003957g0007.1 protein AED:0.12 eAED:0.13 QI:0|0.25|0.11|1|0.37|0.55|9|0|747; (*GB) gi|296090248|emb|CBI40067.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=0.0) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=0.0) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00011847g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.57|1|0.33|0.14|7|253|411; (*GB) gi|356528330|ref|XP_003532757.1| (e_value=7e-52) PREDICTED: uncharacterized protein LOC100787138 [Glycine max];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=8e-21) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=6e-28) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc02g076670.2.1 (e_value=5e-124) genomic_reference:SL2.40ch02 gene_region:36398211-36400409 transcript_region:SL2.40ch02:36398211..36400409+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q2QYV2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00011847g0013.1 protein AED:0.52 eAED:0.71 QI:0|0|0|1|1|1|2|0|67 NbS00055196g0004.1 protein AED:0.36 eAED:0.38 QI:0|0.6|0.66|1|0.6|0.66|6|285|232; (*GB) gi|224089292|ref|XP_002308678.1| (e_value=3e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VY97|Y4213_ARATH (e_value=4e-73) UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1;; (*TAIR) AT2G25310.1 (e_value=6e-77) | Symbols: | Protein of unknown function (DUF2012) | chr2:10777436-10779123 REVERSE LENGTH=210;; (*ITAG) Solyc08g041980.2.1 (e_value=9e-94) genomic_reference:SL2.40ch08 gene_region:28490019-28503056 transcript_region:SL2.40ch08:28490019..28503056+ go_terms:GO:0017076,GO:0003779 functional_description:"C15orf24 homolog (AHRD V1 ***- C1BJZ2_OSMMO); contains Interpro domain(s) IPR019008 Protein of unknown function DUF2012 "; GO:0017076,GO:0003779 NbS00018500g0007.1 protein AED:0.01 eAED:0.01 QI:180|1|1|1|0|0.5|2|2547|170; (*GB) gi|156070768|gb|ABU45182.1| (e_value=5e-67) unknown [Capsicum frutescens];; (*TAIR) AT5G65650.1 (e_value=3e-53) | Symbols: | Protein of unknown function (DUF1195) | chr5:26239588-26241195 FORWARD LENGTH=185;; (*ITAG) Solyc02g085480.2.1 (e_value=7e-68) genomic_reference:SL2.40ch02 gene_region:42931628-42935881 transcript_region:SL2.40ch02:42931628..42935881+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00018500g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|373; (*GB) gi|156070791|gb|ABU45203.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*TAIR) AT5G66740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr5:26647114-26648558 FORWARD LENGTH=370;; (*ITAG) Solyc02g085490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42936944-42938325 transcript_region:SL2.40ch02:42936944..42938325- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00018500g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|150; (*GB) gi|350539197|ref|NP_001233868.1| (e_value=1e-62) 12-oxophytodienoate reductase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FEX0|OPRL_SOLLC (e_value=4e-64) 12-oxophytodienoate reductase-like protein OS=Solanum lycopersicum GN=OPR2 PE=2 SV=1;; (*TAIR) AT1G76690.1 (e_value=2e-52) | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reductase 2 | chr1:28778976-28780355 FORWARD LENGTH=374;; (*ITAG) Solyc01g103390.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:83760511-83763127 transcript_region:SL2.40ch01:83760511..83763127- go_terms:GO:0008152,GO:0016491 functional_description:"Flavin oxidoreductase/NADH oxidase (AHRD V1 **-- A0YMI2_LYNSP); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0008152,GO:0016491 NbS00057015g0002.1 protein AED:0.14 eAED:0.16 QI:0|0.57|0.37|0.87|1|1|8|0|404; (*GB) gi|255638534|gb|ACU19575.1| (e_value=4e-45) unknown [Glycine max];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=8e-13) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.2 (e_value=2e-39) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc05g012240.1.1 (e_value=3e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5517469-5519543 transcript_region:SL2.40ch05:5517469..5519543- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Nuclear transport factor 2 domain containing protein expressed (AHRD V1 **-- Q7Y1L6_ORYSJ); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00058001g0003.1 protein AED:0.21 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|359477017|ref|XP_002274276.2| (e_value=9e-50) PREDICTED: GDP-mannose transporter GONST1-like [Vitis vinifera];; (*SWP) sp|Q9FY84|PEN2_ARATH (e_value=3e-51) Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1;; (*TAIR) AT5G09310.1 (e_value=2e-52) | Symbols: | CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr5:2887403-2888501 REVERSE LENGTH=146;; (*ITAG) Solyc06g016760.1.1 (e_value=2e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:9564694-9565038 transcript_region:SL2.40ch06:9564694..9565038- functional_description:"Gamma-secretase subunit PEN2-like (AHRD V1 *-*- Q5JN39_ORYSJ); contains Interpro domain(s) IPR019379 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit "; NbS00058001g0014.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0.6|0.8|1|1|5|0|182; (*GB) gi|255578876|ref|XP_002530292.1| (e_value=9e-85) calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q8N5S9|KKCC1_HUMAN (e_value=3e-27) Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2;; (*TAIR) AT3G45240.2 (e_value=6e-80) | Symbols: GRIK1 | geminivirus rep interacting kinase 1 | chr3:16570774-16572902 REVERSE LENGTH=396;; (*ITAG) Solyc11g069310.1.1 (e_value=1e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51007185-51010200 transcript_region:SL2.40ch11:51007185..51010200+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q8LPG6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00058001g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.14|1|1|7|0|198; (*GB) gi|225435291|ref|XP_002282279.1| (e_value=2e-55) PREDICTED: probable serine/threonine-protein kinase DDB_G0279405-like [Vitis vinifera];; (*TAIR) AT3G45240.2 (e_value=5e-35) | Symbols: GRIK1 | geminivirus rep interacting kinase 1 | chr3:16570774-16572902 REVERSE LENGTH=396;; (*ITAG) Solyc11g069300.1.1 (e_value=5e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51005634-51007141 transcript_region:SL2.40ch11:51005634..51007141+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 *-*- Q9M1T5_ARATH); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0006468 NbS00009798g0001.1 protein AED:0.32 eAED:0.32 QI:50|0.66|0.75|0.75|0|0|4|439|48 NbS00016165g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|136; (*GB) gi|77999293|gb|ABB16993.1| (e_value=4e-94) unknown [Solanum tuberosum];; (*SWP) sp|P46297|RS23_FRAAN (e_value=2e-94) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=1e-91) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=8e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00016165g0013.1 protein AED:0.31 eAED:0.31 QI:77|1|0.8|1|1|1|5|0|477; (*GB) gi|113205238|gb|ABI34308.1| (e_value=0.0) WD domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q8N7N5|DCAF8_MOUSE (e_value=3e-95) DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1;; (*TAIR) AT3G45620.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:16745918-16747993 FORWARD LENGTH=481;; (*ITAG) Solyc11g072540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52812637-52816593 transcript_region:SL2.40ch11:52812637..52816593+ functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016165g0011.1 protein AED:0.04 eAED:0.04 QI:230|0.8|0.83|1|1|1|6|659|367; (*GB) gi|27374988|dbj|BAC53771.1| (e_value=0.0) wound-inuduced protein kinase [Nicotiana benthamiana];; (*SWP) sp|Q39023|MPK3_ARATH (e_value=0.0) Mitogen-activated protein kinase 3 OS=Arabidopsis thaliana GN=MPK3 PE=1 SV=2;; (*TAIR) AT3G45640.1 (e_value=0.0) | Symbols: ATMPK3, MPK3, ATMAPK3 | mitogen-activated protein kinase 3 | chr3:16756918-16758476 FORWARD LENGTH=370;; (*ITAG) Solyc06g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:192235-195321 transcript_region:SL2.40ch06:192235..195321+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00016165g0010.1 protein AED:0.19 eAED:0.19 QI:75|0|0.5|1|1|1|2|0|264; (*GB) gi|121663827|dbj|BAF44533.1| (e_value=9e-166) class IV chitinase [Nicotiana tabacum];; (*SWP) sp|Q6K8R2|CHI6_ORYSJ (e_value=3e-101) Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1;; (*TAIR) AT3G54420.1 (e_value=2e-107) | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of carrot EP3-3 chitinase | chr3:20145935-20147034 FORWARD LENGTH=273;; (*ITAG) Solyc04g072000.2.1 (e_value=5e-146) genomic_reference:SL2.40ch04 gene_region:56659743-56661631 transcript_region:SL2.40ch04:56659743..56661631- go_terms:GO:0008843 functional_description:"Chitinase (AHRD V1 ***- D0QU15_LACSA); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0008843 NbS00030560g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|207; (*ITAG) Solyc12g008610.1.1 (e_value=4e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:2001410-2001862 transcript_region:SL2.40ch12:2001410..2001862- functional_description:"Unknown Protein (AHRD V1)"; NbS00005425g0007.1 protein AED:0.26 eAED:0.31 QI:0|0.5|0.28|1|0.5|0.57|7|0|356; (*GB) gi|225441014|ref|XP_002277536.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100254577 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=2e-38) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc09g008940.2.1 (e_value=3e-133) genomic_reference:SL2.40ch09 gene_region:2333443-2337481 transcript_region:SL2.40ch09:2333443..2337481+ go_terms:GO:0003677,GO:0006468 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 *-*- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006468 NbS00018285g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|0.83|1|0.8|0.83|6|0|378; (*GB) gi|21311775|gb|AAM46847.1|AF498264_1 (e_value=0.0) steroleosin-B [Sesamum indicum];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=5e-31) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT4G10020.1 (e_value=0.0) | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268363-6270179 FORWARD LENGTH=389;; (*ITAG) Solyc06g064650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36682986-36685667 transcript_region:SL2.40ch06:36682986..36685667- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00018285g0001.1 protein AED:0.15 eAED:0.60 QI:0|0|0|1|1|1|2|0|312; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g011460.1.1 (e_value=7e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00018285g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.42|0.85|0.66|0.57|7|0|212; (*GB) gi|359495237|ref|XP_002277962.2| (e_value=3e-103) PREDICTED: abhydrolase domain-containing protein 11-like [Vitis vinifera];; (*TAIR) AT4G10030.1 (e_value=6e-102) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:6270490-6273098 REVERSE LENGTH=380;; (*ITAG) Solyc06g064640.2.1 (e_value=2e-127) genomic_reference:SL2.40ch06 gene_region:36668100-36682313 transcript_region:SL2.40ch06:36668100..36682313+ functional_description:"Alpha/beta hydrolase (AHRD V1 **-- D7W6X8_9FLAO); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00008246g0004.1 protein AED:0.23 eAED:0.23 QI:230|0|0.66|1|1|1|3|1159|141; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00008246g0014.1 protein AED:0.42 eAED:0.42 QI:238|0.25|0.2|0.8|0|0.2|5|102|120 NbS00008246g0015.1 protein AED:0.11 eAED:0.12 QI:209|0.72|0.75|1|0.63|0.75|12|340|503; (*GB) gi|224082490|ref|XP_002306713.1| (e_value=0.0) SET domain protein [Populus trichocarpa];; (*SWP) sp|Q84WW6|ASHH1_ARATH (e_value=2e-178) Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=2 SV=1;; (*TAIR) AT1G76710.2 (e_value=1e-179) | Symbols: ASHH1 | SET domain group 26 | chr1:28789887-28792371 REVERSE LENGTH=492;; (*ITAG) Solyc07g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3363412-3374716 transcript_region:SL2.40ch07:3363412..3374716+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00037096g0009.1 protein AED:0.22 eAED:0.27 QI:0|0|0.1|0.9|0|0.1|10|0|631; (*GB) gi|225446867|ref|XP_002283850.1| (e_value=5e-75) PREDICTED: ribosomal L1 domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q6H7P8|SAP4_ORYSJ (e_value=3e-21) Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1;; (*TAIR) AT3G58660.1 (e_value=7e-72) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=1e-123) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00037096g0010.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|3|0|143; (*GB) gi|296086315|emb|CBI31756.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5RCE6|RL1D1_PONAB (e_value=1e-13) Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2;; (*TAIR) AT3G58660.1 (e_value=2e-37) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00037096g0011.1 protein AED:0.44 eAED:0.54 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|147800021|emb|CAN65947.1| (e_value=3e-26) hypothetical protein VITISV_020727 [Vitis vinifera];; (*TAIR) AT3G58660.1 (e_value=1e-28) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc01g111420.2.1 (e_value=9e-57) genomic_reference:SL2.40ch01 gene_region:89436294-89437964 transcript_region:SL2.40ch01:89436294..89437964+ go_terms:GO:0006396 functional_description:"LOC734162 protein (Fragment) (AHRD V1 *-*- Q4KLD4_XENLA); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00014682g0004.1 protein AED:0.01 eAED:0.01 QI:467|1|0.66|1|1|1|3|288|322; (*GB) gi|350606310|ref|NP_001234250.1| (e_value=8e-132) homeobox [Solanum lycopersicum];; (*SWP) sp|Q6ZA74|HOX5_ORYSJ (e_value=3e-39) Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=6e-39) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc03g113270.2.1 (e_value=2e-134) genomic_reference:SL2.40ch03 gene_region:57510884-57513100 transcript_region:SL2.40ch03:57510884..57513100+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0005634,GO:0006355,GO:0045449 NbS00022160g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|357445371|ref|XP_003592963.1| (e_value=1e-15) TCP family transcription factor-like protein [Medicago truncatula];; (*SWP) sp|Q9C9L2|TCP15_ARATH (e_value=4e-16) Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1;; (*TAIR) AT1G69690.1 (e_value=3e-17) | Symbols: | TCP family transcription factor | chr1:26216449-26217426 FORWARD LENGTH=325;; (*ITAG) Solyc01g103780.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:84064508-84066135 transcript_region:SL2.40ch01:84064508..84066135- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00007040g0006.1 protein AED:0.17 eAED:0.17 QI:128|0.75|0.77|1|0.75|0.66|9|296|803; (*GB) gi|350536663|ref|NP_001234258.1| (e_value=0.0) potassium channel [Solanum lycopersicum];; (*SWP) sp|Q38998|AKT1_ARATH (e_value=0.0) Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2;; (*TAIR) AT2G26650.1 (e_value=0.0) | Symbols: AKT1, ATAKT1, KT1 | K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857;; (*ITAG) Solyc12g006850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1258370-1264932 transcript_region:SL2.40ch12:1258370..1264932- go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- Q9LEG6_SOLLC); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00007040g0005.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|88; (*GB) gi|356556159|ref|XP_003546394.1| (e_value=1e-31) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101-like [Glycine max];; (*SWP) sp|Q9LW83|CE101_ARATH (e_value=4e-28) G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2;; (*TAIR) AT3G16030.1 (e_value=3e-29) | Symbols: CES101 | lectin protein kinase family protein | chr3:5439609-5442802 FORWARD LENGTH=850;; (*ITAG) Solyc12g006840.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1254397-1257951 transcript_region:SL2.40ch12:1254397..1257951+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00052104g0003.1 protein AED:0.29 eAED:0.29 QI:426|1|0.9|1|1|1|10|0|494; (*GB) gi|225427230|ref|XP_002280602.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At4g35230 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=0.0) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00024431g0002.1 protein AED:0.13 eAED:0.13 QI:267|0.73|0.75|1|0.93|0.87|16|361|339; (*GB) gi|359487708|ref|XP_002278964.2| (e_value=0.0) PREDICTED: flap endonuclease 1-like [Vitis vinifera];; (*SWP) sp|O65251|FEN1_ARATH (e_value=0.0) Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2;; (*TAIR) AT5G26680.2 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383;; (*ITAG) Solyc01g102370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82961683-82969941 transcript_region:SL2.40ch01:82961683..82969941+ go_terms:GO:0017108 functional_description:"Flap structure specific endonuclease 1 (AHRD V1 **** Q6DRB5_DANRE); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0017108 NbS00024431g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|85 NbS00008707g0002.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.75|1|1|4|0|270; (*GB) gi|224125976|ref|XP_002319725.1| (e_value=9e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G17900.1 (e_value=2e-33) | Symbols: | microfibrillar-associated protein-related | chr5:5925144-5926690 FORWARD LENGTH=435;; (*ITAG) Solyc01g100500.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:82265025-82268871 transcript_region:SL2.40ch01:82265025..82268871- go_terms:GO:0005576 functional_description:"Microfibrillar-associated protein 1 (AHRD V1 *-*- C1BVS1_9MAXI); contains Interpro domain(s) IPR009730 Micro-fibrillar-associated 1, C-terminal "; GO:0005576 NbS00033128g0004.1 protein AED:0.21 eAED:0.28 QI:26|0.6|0.5|0.83|0.8|0.66|6|0|392; (*GB) gi|297838161|ref|XP_002886962.1| (e_value=9e-180) hypothetical protein ARALYDRAFT_475677 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=3e-178) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=2e-179) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40045892-40050013 transcript_region:SL2.40ch02:40045892..40050013- go_terms:GO:0015198 functional_description:"Yellow stripe-like protein 2.1 (Fragment) (AHRD V1 ***- B4ZYE4_BRAJU); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00046479g0004.1 protein AED:0.20 eAED:0.20 QI:271|0.75|0.88|1|0.75|0.77|9|324|209; (*GB) gi|224097206|ref|XP_002310876.1| (e_value=7e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CR14|FANCL_MOUSE (e_value=3e-43) E3 ubiquitin-protein ligase FANCL OS=Mus musculus GN=Fancl PE=1 SV=1;; (*TAIR) AT5G65740.2 (e_value=7e-87) | Symbols: | zinc ion binding | chr5:26301702-26303422 REVERSE LENGTH=300;; (*ITAG) Solyc03g043870.2.1 (e_value=2e-132) genomic_reference:SL2.40ch03 gene_region:11501199-11505163 transcript_region:SL2.40ch03:11501199..11505163- go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin ligase protein FANCL (AHRD V1 **-* B6T4M8_MAIZE); contains Interpro domain(s) IPR019162 Fanconi anemia complex, subunit FancL, WD-repeat region "; GO:0005515,GO:0004842 NbS00060196g0003.1 protein AED:0.32 eAED:0.32 QI:183|1|0.33|1|1|1|3|0|136; (*GB) gi|125629440|emb|CAM33431.1| (e_value=6e-46) Ins5P-2kinase [Phaseolus vulgaris];; (*SWP) sp|Q93YN9|IPPK_ARATH (e_value=4e-43) Inositol-pentakisphosphate 2-kinase OS=Arabidopsis thaliana GN=IPK1 PE=1 SV=1;; (*TAIR) AT1G22100.1 (e_value=2e-44) | Symbols: | Inositol-pentakisphosphate 2-kinase family protein | chr1:7798023-7800030 REVERSE LENGTH=441;; (*ITAG) Solyc04g080670.2.1 (e_value=4e-29) genomic_reference:SL2.40ch04 gene_region:62374139-62376875 transcript_region:SL2.40ch04:62374139..62376875+ go_terms:GO:0035299 functional_description:"Inositol pentakisphosphate 2-kinase (AHRD V1 **** A7X641_SOYBN); contains Interpro domain(s) IPR018009 Inositol-pentakisphosphate 2-kinase, metazoa "; GO:0035299 NbS00000597g0006.1 protein AED:0.07 eAED:0.13 QI:0|0.66|0.5|1|0|0|4|0|160; (*GB) gi|351723139|ref|NP_001238292.1| (e_value=4e-41) uncharacterized protein LOC100306402 [Glycine max];; (*SWP) sp|A2RVT6|RTNLN_ARATH (e_value=6e-33) Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2;; (*TAIR) AT1G68230.2 (e_value=8e-34) | Symbols: | Reticulon family protein | chr1:25572185-25572921 FORWARD LENGTH=162;; (*ITAG) Solyc05g008890.2.1 (e_value=9e-64) genomic_reference:SL2.40ch05 gene_region:3102838-3104660 transcript_region:SL2.40ch05:3102838..3104660- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00000597g0115.1 protein AED:0.04 eAED:0.10 QI:0|0|0|1|0.66|0.75|4|0|722 NbS00000597g0101.1 protein AED:0.20 eAED:0.20 QI:0|1|0.87|1|0.85|0.75|8|1485|457 NbS00051728g0006.1 protein AED:0.17 eAED:0.17 QI:1032|0.57|0.75|1|0.71|0.87|8|87|197; (*GB) gi|147855944|emb|CAN80749.1| (e_value=2e-51) hypothetical protein VITISV_040486 [Vitis vinifera];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=6e-49) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G02840.3 (e_value=5e-50) | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303;; (*ITAG) Solyc01g099810.2.1 (e_value=6e-60) genomic_reference:SL2.40ch01 gene_region:81709617-81716769 transcript_region:SL2.40ch01:81709617..81716769- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0050733 NbS00051728g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.4|0.33|1|0.4|0.33|6|114|109 NbS00025525g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|268; (*ITAG) Solyc07g032700.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00025525g0005.1 protein AED:0.17 eAED:0.45 QI:0|0|0.33|0.66|0|0.33|3|89|159 NbS00007888g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|225453309|ref|XP_002269020.1| (e_value=1e-29) PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera];; (*SWP) sp|P40229|CSK2C_ARATH (e_value=1e-29) Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1;; (*TAIR) AT4G17640.1 (e_value=7e-31) | Symbols: CKB2 | casein kinase II beta chain 2 | chr4:9825438-9826988 FORWARD LENGTH=282;; (*ITAG) Solyc01g088740.2.1 (e_value=3e-32) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00007888g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.92|0.8|0.93|0.71|0.8|15|0|1206; (*GB) gi|359485181|ref|XP_002278608.2| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis vinifera];; (*SWP) sp|B2RR83|YTDC2_MOUSE (e_value=0.0) Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1;; (*TAIR) AT2G30800.1 (e_value=0.0) | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299;; (*ITAG) Solyc07g044930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55294938-55308391 transcript_region:SL2.40ch07:55294938..55308391- go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A (AHRD V1 ***- B0W816_CULQU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00007888g0007.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|345; (*GB) gi|255543737|ref|XP_002512931.1| (e_value=2e-42) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=5e-22) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=4e-23) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc07g044920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55293207-55294304 transcript_region:SL2.40ch07:55293207..55294304+ functional_description:"F-box (AHRD V1 **-- Q84KQ9_PRUMU); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00007888g0102.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|176 NbS00007888g0104.1 protein AED:0.60 eAED:0.77 QI:0|0|0|0.4|1|1|5|0|102 NbS00008196g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0|0.66|1|1|3|0|73 NbS00011815g0004.1 protein AED:0.36 eAED:0.37 QI:0|0.83|0.71|1|0.83|0.85|7|0|376; (*GB) gi|224113515|ref|XP_002316517.1| (e_value=3e-125) DNA glycosylase [Populus trichocarpa];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=4e-115) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=1e-116) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc11g007580.1.1 (e_value=5e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1814235-1823255 transcript_region:SL2.40ch11:1814235..1823255- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00046682g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.33|1|0|0.66|3|398|185; (*GB) gi|356516996|ref|XP_003527176.1| (e_value=2e-68) PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 3 [Glycine max];; (*TAIR) AT5G57950.1 (e_value=5e-68) | Symbols: | 26S proteasome regulatory subunit, putative | chr5:23460765-23462128 FORWARD LENGTH=227;; (*ITAG) Solyc07g005640.2.1 (e_value=2e-95) genomic_reference:SL2.40ch07 gene_region:514281-518373 transcript_region:SL2.40ch07:514281..518373+ go_terms:GO:0003713,GO:0043425 functional_description:"26S proteasome non-ATPase regulatory subunit 9 (AHRD V1 ***- B6TN44_MAIZE); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0003713,GO:0043425 NbS00046682g0002.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0.25|1|1|1|4|0|388; (*GB) gi|225445873|ref|XP_002276194.1| (e_value=2e-125) PREDICTED: probable WRKY transcription factor 32 [Vitis vinifera];; (*SWP) sp|P59583|WRK32_ARATH (e_value=1e-95) Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1;; (*TAIR) AT4G30935.1 (e_value=8e-97) | Symbols: WRKY32, ATWRKY32 | WRKY DNA-binding protein 32 | chr4:15051916-15053908 REVERSE LENGTH=466;; (*ITAG) Solyc07g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:518591-524775 transcript_region:SL2.40ch07:518591..524775- go_terms:GO:0005515,GO:0003677 functional_description:"WRKY transcription factor (AHRD V1 ***- D4P3Y2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003677 NbS00009999g0010.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.8|0.83|6|8|228; (*GB) gi|224105811|ref|XP_002313939.1| (e_value=3e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=8e-99) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT3G49720.2 (e_value=6e-100) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440192-18441655 REVERSE LENGTH=261;; (*ITAG) Solyc04g077420.2.1 (e_value=1e-138) genomic_reference:SL2.40ch04 gene_region:59927141-59933091 transcript_region:SL2.40ch04:59927141..59933091- functional_description:"Unknown Protein (AHRD V1)"; NbS00009999g0012.1 protein AED:0.52 eAED:0.54 QI:0|0|0|1|0|0|4|0|208 NbS00009999g0208.1 protein AED:0.06 eAED:0.06 QI:0|0.9|0.81|1|0.6|0.54|11|137|705 NbS00009999g0209.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|0.33|0.5|4|0|441 NbS00009999g0305.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.08|1|1|12|0|676 NbS00053961g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.76|0.70|1|0.80|0.74|27|2928|1578; (*GB) gi|899344|emb|CAA58859.1| (e_value=0.0) lipoxygenase [Nicotiana tabacum];; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=0.0) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=0.0) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81236488-81243938 transcript_region:SL2.40ch01:81236488..81243938+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q9FT17_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00028654g0001.1 protein AED:0.09 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|427; (*GB) gi|225433571|ref|XP_002271662.1| (e_value=0.0) PREDICTED: protein ELC [Vitis vinifera];; (*SWP) sp|Q9LHG8|ELC_ARATH (e_value=5e-159) Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1;; (*TAIR) AT3G12400.1 (e_value=4e-160) | Symbols: ELC, ATELC | Ubiquitin-conjugating enzyme/RWD-like protein | chr3:3944600-3945796 REVERSE LENGTH=398;; (*ITAG) Solyc10g085590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64036326-64037537 transcript_region:SL2.40ch10:64036326..64037537+ go_terms:GO:0030374,GO:0043130 functional_description:"Tumor susceptibility protein 101 (Fragment) (AHRD V1 *-*- Q09H81_MACMU); contains Interpro domain(s) IPR008883 Tumour susceptibility gene 101 "; GO:0030374,GO:0043130 NbS00028654g0009.1 protein AED:0.21 eAED:0.21 QI:169|1|1|1|1|1|9|399|454; (*GB) gi|255585735|ref|XP_002533549.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT3G52870.1 (e_value=0.0) | Symbols: | IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456;; (*ITAG) Solyc10g085610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64054085-64057974 transcript_region:SL2.40ch10:64054085..64057974- functional_description:"Calmodulin binding protein (AHRD V1 **-- B6SL12_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00009428g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|261; (*GB) gi|225439416|ref|XP_002264016.1| (e_value=6e-70) PREDICTED: trihelix transcription factor GT-3a [Vitis vinifera];; (*SWP) sp|O80450|TGT3B_ARATH (e_value=2e-48) Trihelix transcription factor GT-3b OS=Arabidopsis thaliana GN=GT-3B PE=1 SV=1;; (*TAIR) AT2G38250.1 (e_value=1e-49) | Symbols: | Homeodomain-like superfamily protein | chr2:16018384-16019500 FORWARD LENGTH=289;; (*ITAG) Solyc09g005560.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:386228-387708 transcript_region:SL2.40ch09:386228..387708- functional_description:"Zinc finger and SCAN domain containing 29 (Predicted) (AHRD V1 *--- A9X1B1_PAPAN); contains Interpro domain(s) IPR017877 MYB-like "; NbS00025104g0012.1 protein AED:0.09 eAED:0.09 QI:186|1|1|1|1|1|8|378|767; (*GB) gi|1103712|emb|CAA58700.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P21616|AVP_VIGRR (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc12g009840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3032882-3037112 transcript_region:SL2.40ch12:3032882..3037112+ go_terms:GO:0016020 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0016020 NbS00025104g0013.1 protein AED:0.09 eAED:0.09 QI:310|1|1|1|0.28|0.46|15|191|556; (*GB) gi|359484681|ref|XP_002262830.2| (e_value=0.0) PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera];; (*SWP) sp|Q9UKC9|FBXL2_HUMAN (e_value=3e-13) F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3;; (*TAIR) AT1G15740.1 (e_value=1e-177) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc12g009870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3046369-3051336 transcript_region:SL2.40ch12:3046369..3051336+ functional_description:"Leucine-rich repeat-like protein (AHRD V1 ***- Q6K620_ORYSJ); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00025104g0018.1 protein AED:0.36 eAED:0.36 QI:0|0|0.5|1|0|0|2|0|97 NbS00025104g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|359484691|ref|XP_003633146.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100852953 [Vitis vinifera];; (*TAIR) AT5G11090.1 (e_value=5e-17) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc07g007330.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00025104g0014.1 protein AED:0.37 eAED:0.40 QI:184|0.5|0.66|1|0.5|0.66|3|0|187; (*ITAG) Solyc12g009860.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3039924-3042224 transcript_region:SL2.40ch12:3039924..3042224- functional_description:"Unknown Protein (AHRD V1)"; NbS00030248g0005.1 protein AED:0.31 eAED:0.47 QI:22|0|0.25|1|0|0|4|0|107; (*GB) gi|359493828|ref|XP_002282618.2| (e_value=9e-33) PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera];; (*SWP) sp|Q9FN32|YIPL7_ARATH (e_value=3e-33) Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1;; (*TAIR) AT5G53940.1 (e_value=2e-34) | Symbols: | Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129;; (*ITAG) Solyc12g013920.1.1 (e_value=4e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4753645-4757418 transcript_region:SL2.40ch12:4753645..4757418- functional_description:"Yippee family protein (AHRD V1 ***- D7MTM3_ARALY); contains Interpro domain(s) IPR004910 Yippee-like protein "; NbS00008510g0009.1 protein AED:0.00 eAED:0.00 QI:263|0.90|0.75|1|0.36|0.41|12|56|602; (*GB) gi|359476554|ref|XP_002267871.2| (e_value=0.0) PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q92616|GCN1L_HUMAN (e_value=1e-24) Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6;; (*TAIR) AT1G64790.1 (e_value=0.0) | Symbols: ILA | ILITYHIA | chr1:24065232-24081908 REVERSE LENGTH=2610;; (*ITAG) Solyc04g050520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46580155-46600878 transcript_region:SL2.40ch04:46580155..46600878- go_terms:GO:0005488 functional_description:"Translational activator gcn1 (AHRD V1 **-- Q177C0_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00008510g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.89|0.86|0.98|0.93|0.94|50|0|2033; (*GB) gi|296085156|emb|CBI28651.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q92616|GCN1L_HUMAN (e_value=0.0) Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6;; (*TAIR) AT1G64790.1 (e_value=0.0) | Symbols: ILA | ILITYHIA | chr1:24065232-24081908 REVERSE LENGTH=2610;; (*ITAG) Solyc04g050510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46555397-46578300 transcript_region:SL2.40ch04:46555397..46578300- go_terms:GO:0005515 functional_description:"Translational activator gcn1 (AHRD V1 **-- B0W357_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00041351g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|228; (*GB) gi|195542260|gb|AAR87850.2| (e_value=3e-66) fertilization-related kinase 1 [Solanum chacoense];; (*SWP) sp|B2GUY1|PLK4_RAT (e_value=9e-23) Serine/threonine-protein kinase PLK4 OS=Rattus norvegicus GN=Plk4 PE=2 SV=1;; (*TAIR) AT3G50310.1 (e_value=2e-41) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc06g065790.1.1 (e_value=3e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC26152828g0003.1 protein AED:0.12 eAED:0.12 QI:113|1|1|1|1|1|3|586|349; (*GB) gi|350536069|ref|NP_001233972.1| (e_value=0.0) jasmonic acid 2 [Solanum lycopersicum];; (*SWP) sp|Q93VY3|NAC72_ARATH (e_value=1e-124) NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1;; (*TAIR) AT4G27410.2 (e_value=1e-125) | Symbols: RD26, ANAC072 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr4:13707928-13709013 REVERSE LENGTH=297;; (*ITAG) Solyc12g013620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4462011-4464637 transcript_region:SL2.40ch12:4462011..4464637- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1K9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00039797g0003.1 protein AED:0.16 eAED:0.16 QI:78|1|1|1|1|1|2|328|434; (*GB) gi|77999245|gb|ABB16969.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q9XF97|RL4_PRUAR (e_value=0.0) 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=0.0) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00013635g0001.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|227202782|dbj|BAH56864.1| (e_value=6e-15) AT2G18670 [Arabidopsis thaliana];; (*SWP) sp|Q9ZV51|ATL56_ARATH (e_value=2e-16) RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1;; (*TAIR) AT2G18670.1 (e_value=2e-17) | Symbols: | RING/U-box superfamily protein | chr2:8093469-8094452 FORWARD LENGTH=181;; (*ITAG) Solyc07g006400.1.1 (e_value=9e-32) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1221828-1222322 transcript_region:SL2.40ch07:1221828..1222322+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018176g0003.1 protein AED:0.28 eAED:0.33 QI:0|0.66|0.57|1|0.33|0.57|7|0|384; (*GB) gi|357485777|ref|XP_003613176.1| (e_value=0.0) Carboxyl-terminal proteinase-like protein [Medicago truncatula];; (*TAIR) AT1G10750.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr1:3574986-3578310 REVERSE LENGTH=467;; (*ITAG) Solyc05g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15635-18582 transcript_region:SL2.40ch05:15635..18582- functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbC25951858g0002.1 protein AED:0.36 eAED:0.38 QI:152|1|0.5|1|1|1|2|0|55; (*ITAG) Solyc11g066010.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:48730159-48733045 transcript_region:SL2.40ch11:48730159..48733045+ functional_description:"CM0545.320.nc protein (AHRD V1 ***- B0BLB0_LOTJA)"; NbS00029376g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|393; (*GB) gi|359474399|ref|XP_003631454.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=5e-29) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT4G16563.1 (e_value=3e-147) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:9329933-9331432 REVERSE LENGTH=499;; (*ITAG) Solyc08g078670.2.1 (e_value=6e-169) genomic_reference:SL2.40ch08 gene_region:59615831-59617757 transcript_region:SL2.40ch08:59615831..59617757+ go_terms:GO:0006508 functional_description:"Aspartyl protease (AHRD V1 **-- B8YIB7_MIRJA); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00042588g0004.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|117; (*ITAG) Solyc06g011460.1.1 (e_value=6e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00028360g0005.1 protein AED:0.11 eAED:0.11 QI:134|1|1|1|1|1|9|308|1051; (*GB) gi|225444519|ref|XP_002268884.1| (e_value=0.0) PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4-like [Vitis vinifera];; (*SWP) sp|Q8W4K1|TYW23_ARATH (e_value=0.0) tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana GN=At4g04670 PE=2 SV=1;; (*TAIR) AT4G04670.1 (e_value=0.0) | Symbols: | Met-10+ like family protein / kelch repeat-containing protein | chr4:2367603-2371990 FORWARD LENGTH=995;; (*ITAG) Solyc05g055610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64318734-64325365 transcript_region:SL2.40ch05:64318734..64325365- go_terms:GO:0005515 functional_description:"tRNA wybutosine-synthesizing protein (AHRD V1 *--- C4QXF1_PICPG); contains Interpro domain(s) IPR003827 tRNA wybutosine-synthesizing protein "; GO:0005515 NbS00005281g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|350536997|ref|NP_001233764.1| (e_value=4e-51) TAGL12 transcription factor [Solanum lycopersicum];; (*SWP) sp|Q38841|AGL12_ARATH (e_value=4e-40) Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2;; (*TAIR) AT1G71692.1 (e_value=3e-41) | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952903-26954939 REVERSE LENGTH=211;; (*ITAG) Solyc11g032100.1.1 (e_value=4e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:21504136-21523999 transcript_region:SL2.40ch11:21504136..21523999+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 ***- B2KJ31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00016037g0001.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|130; (*GB) gi|224127955|ref|XP_002320205.1| (e_value=7e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=9e-22) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=7e-23) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=6e-32) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00016037g0005.1 protein AED:0.47 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|112; (*GB) gi|147795654|emb|CAN67739.1| (e_value=4e-14) hypothetical protein VITISV_016128 [Vitis vinifera];; (*TAIR) AT2G46520.1 (e_value=1e-12) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=7e-20) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00045216g0001.1 protein AED:0.00 eAED:0.46 QI:732|-1|0|1|-1|1|1|241|402; (*GB) gi|224116570|ref|XP_002317334.1| (e_value=3e-113) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55530.2 (e_value=2e-103) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00045216g0007.1 protein AED:0.13 eAED:0.13 QI:28|0.5|0|1|0.5|0.33|3|0|493; (*GB) gi|225447606|ref|XP_002272993.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=6e-55) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=2e-142) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc07g048030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56541879-56545444 transcript_region:SL2.40ch07:56541879..56545444+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00054940g0003.1 protein AED:0.41 eAED:0.41 QI:41|1|0.8|1|0.5|0.8|5|0|219; (*GB) gi|359474401|ref|XP_002266460.2| (e_value=9e-63) PREDICTED: histidine triad nucleotide-binding protein 3-like [Vitis vinifera];; (*SWP) sp|Q28BZ2|HINT3_XENTR (e_value=7e-23) Histidine triad nucleotide-binding protein 3 OS=Xenopus tropicalis GN=hint3 PE=2 SV=1;; (*TAIR) AT4G16566.1 (e_value=7e-61) | Symbols: HINT4 | histidine triad nucleotide-binding 4 | chr4:9334873-9335884 REVERSE LENGTH=146;; (*ITAG) Solyc08g007380.2.1 (e_value=6e-80) genomic_reference:SL2.40ch08 gene_region:1960528-1967459 transcript_region:SL2.40ch08:1960528..1967459+ go_terms:GO:0003824 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B0KA64_THEP3); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003824 NbC25339958g0004.1 protein AED:0.61 eAED:0.75 QI:22|0|0|1|1|0.5|2|0|52; (*GB) gi|75288399|sp|Q5YLB4.1|GYRB_NICBE (e_value=1e-17) RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB4|GYRB_NICBE (e_value=4e-19) DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1;; (*TAIR) AT5G04130.1 (e_value=1e-17) | Symbols: GYRB2 | DNA GYRASE B2 | chr5:1122084-1128031 REVERSE LENGTH=732;; (*ITAG) Solyc12g021230.1.1 (e_value=8e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14910466-14933796 transcript_region:SL2.40ch12:14910466..14933796+ go_terms:GO:0006265,GO:0005524,GO:0005694 functional_description:"DNA gyrase subunit B (AHRD V1 ***- Q8YLN3_ANASP); contains Interpro domain(s) IPR011557 DNA gyrase, subunit B "; GO:0006265,GO:0005524,GO:0005694 NbS00032202g0002.1 protein AED:0.29 eAED:0.30 QI:0|0.5|0|0.66|1|1|3|0|332; (*GB) gi|147833916|emb|CAN72697.1| (e_value=2e-148) hypothetical protein VITISV_011566 [Vitis vinifera];; (*SWP) sp|Q9SA98|ALKBH_ARATH (e_value=5e-135) Alpha-ketoglutarate-dependent dioxygenase alkB OS=Arabidopsis thaliana GN=At1g11780 PE=2 SV=2;; (*TAIR) AT1G11780.1 (e_value=4e-136) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:3977614-3979177 REVERSE LENGTH=345;; (*ITAG) Solyc04g045590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:33406281-33412110 transcript_region:SL2.40ch04:33406281..33412110+ go_terms:GO:0003906,GO:0008198,GO:0070579 functional_description:"Alpha-ketoglutarate-dependent dioxygenase AlkB (AHRD V1 *--* D5ALD4_RHOCB); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0003906,GO:0008198,GO:0070579 NbS00032202g0010.1 protein AED:0.12 eAED:0.23 QI:84|0.44|0.3|0.9|0.44|0.5|10|0|366; (*GB) gi|147867007|emb|CAN80518.1| (e_value=5e-70) hypothetical protein VITISV_009170 [Vitis vinifera];; (*TAIR) AT2G24950.1 (e_value=4e-47) | Symbols: | Protein of Unknown Function (DUF239) | chr2:10613105-10615563 FORWARD LENGTH=411;; (*ITAG) Solyc08g080710.1.1 (e_value=3e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61095123-61098154 transcript_region:SL2.40ch08:61095123..61098154- go_terms:GO:0005515 functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6TV70_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00032202g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.25|0.2|0.4|1|1|5|195|128; (*GB) gi|255543048|ref|XP_002512587.1| (e_value=4e-23) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80536|PIF3_ARATH (e_value=1e-17) Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1;; (*TAIR) AT1G09530.2 (e_value=9e-19) | Symbols: PIF3, POC1, PAP3 | phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524;; (*ITAG) Solyc01g102300.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:82883861-82888441 transcript_region:SL2.40ch01:82883861..82888441+ go_terms:GO:0003700,GO:0042802 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0042802 NbS00003552g0008.1 protein AED:0.22 eAED:0.24 QI:41|0.7|0.71|0.90|0.85|0.85|21|0|746; (*GB) gi|255541800|ref|XP_002511964.1| (e_value=0.0) Protein CASP, putative [Ricinus communis];; (*SWP) sp|Q9LS42|CASP_ARATH (e_value=0.0) Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2;; (*TAIR) AT3G18480.1 (e_value=0.0) | Symbols: AtCASP, CASP | CCAAT-displacement protein alternatively spliced product | chr3:6336924-6341596 FORWARD LENGTH=689;; (*ITAG) Solyc06g069210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39360592-39372973 transcript_region:SL2.40ch06:39360592..39372973+ go_terms:GO:0003677,GO:0003682,GO:0016564 functional_description:"CASP-like protein (AHRD V1 ***- D0NFX2_PHYIN); contains Interpro domain(s) IPR012955 CASP, C-terminal "; GO:0003677,GO:0003682,GO:0016564 NbS00003552g0009.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|1|1|5|0|187; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00003552g0010.1 protein AED:0.36 eAED:0.59 QI:0|0|0|0.66|0|0|3|0|172 NbS00003552g0011.1 protein AED:0.44 eAED:0.66 QI:0|0|0|1|0|0|2|0|81 NbS00010964g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.62|0.55|0.88|0.75|0.77|9|0|655; (*GB) gi|296086337|emb|CBI31778.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0D8N0|RH53_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2;; (*TAIR) AT3G22330.1 (e_value=0.0) | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616;; (*ITAG) Solyc12g006320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:841803-847655 transcript_region:SL2.40ch12:841803..847655- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00047225g0003.1 protein AED:0.30 eAED:0.30 QI:10|0|0|1|0|0|2|0|74 NbS00013591g0003.1 protein AED:0.17 eAED:0.17 QI:36|1|1|1|1|1|4|151|303; (*GB) gi|225443508|ref|XP_002276381.1| (e_value=1e-130) PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=3e-126) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.5 (e_value=5e-130) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110135-10111607 REVERSE LENGTH=293;; (*ITAG) Solyc10g008770.2.1 (e_value=1e-156) genomic_reference:SL2.40ch10 gene_region:2835103-2839953 transcript_region:SL2.40ch10:2835103..2839953- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00058295g0006.1 protein AED:0.30 eAED:0.30 QI:179|1|1|1|1|1|7|614|403; (*GB) gi|255541190|ref|XP_002511659.1| (e_value=5e-158) Phosphatidate cytidylyltransferase, putative [Ricinus communis];; (*SWP) sp|P73548|CDSA_SYNY3 (e_value=1e-46) Phosphatidate cytidylyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cdsA PE=3 SV=1;; (*TAIR) AT3G60620.1 (e_value=2e-142) | Symbols: CDS5 | cytidinediphosphate diacylglycerol synthase 5 | chr3:22406537-22408239 FORWARD LENGTH=399;; (*ITAG) Solyc01g090940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76390782-76401233 transcript_region:SL2.40ch01:76390782..76401233+ go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RD70_RICCO); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00058295g0007.1 protein AED:0.04 eAED:0.04 QI:157|1|0.83|1|0.8|0.66|6|615|309; (*GB) gi|357469827|ref|XP_003605198.1| (e_value=5e-54) hypothetical protein MTR_4g026500 [Medicago truncatula];; (*TAIR) AT1G73440.1 (e_value=2e-30) | Symbols: | calmodulin-related | chr1:27611418-27612182 FORWARD LENGTH=254;; (*ITAG) Solyc01g090920.2.1 (e_value=5e-109) genomic_reference:SL2.40ch01 gene_region:76382960-76386709 transcript_region:SL2.40ch01:76382960..76386709- go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 ***- B6TBW8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00003897g0004.1 protein AED:0.01 eAED:0.01 QI:497|0.66|0.75|1|0.33|0.5|4|220|266; (*GB) gi|19550749|gb|AAL91506.1|AF484252_1 (e_value=2e-143) caffeic acid O-methyltransferase II [Nicotiana tabacum];; (*SWP) sp|Q43609|COMT1_PRUDU (e_value=1e-98) Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1;; (*TAIR) AT5G54160.1 (e_value=4e-90) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc10g005060.2.1 (e_value=2e-138) genomic_reference:SL2.40ch10 gene_region:53330-56283 transcript_region:SL2.40ch10:53330..56283- go_terms:GO:0030755,GO:0033799 functional_description:"O-methyltransferase-like protein (AHRD V1 **** D3JZ18_PRUMU); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0030755,GO:0033799 NbS00003897g0012.1 protein AED:0.40 eAED:0.40 QI:0|0.2|0.16|0.83|0.4|0.16|6|0|318; (*GB) gi|429114|emb|CAA50561.1| (e_value=0.0) catechol O-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q43046|COMT1_POPKI (e_value=2e-108) Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1;; (*TAIR) AT5G54160.1 (e_value=1e-99) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc10g005060.2.1 (e_value=8e-172) genomic_reference:SL2.40ch10 gene_region:53330-56283 transcript_region:SL2.40ch10:53330..56283- go_terms:GO:0030755,GO:0033799 functional_description:"O-methyltransferase-like protein (AHRD V1 **** D3JZ18_PRUMU); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0030755,GO:0033799 NbS00003897g0001.1 protein AED:0.47 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|429114|emb|CAA50561.1| (e_value=6e-36) catechol O-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8LL87|COMT1_COFCA (e_value=7e-19) Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1;; (*TAIR) AT5G54160.1 (e_value=2e-15) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc10g005060.2.1 (e_value=7e-39) genomic_reference:SL2.40ch10 gene_region:53330-56283 transcript_region:SL2.40ch10:53330..56283- go_terms:GO:0030755,GO:0033799 functional_description:"O-methyltransferase-like protein (AHRD V1 **** D3JZ18_PRUMU); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0030755,GO:0033799 NbS00045960g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0.33|1|0.4|0.5|6|0|258; (*GB) gi|359472960|ref|XP_003631221.1| (e_value=3e-140) PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 2 [Vitis vinifera];; (*SWP) sp|P51102|DFRA_ARATH (e_value=6e-51) Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2;; (*TAIR) AT1G68540.2 (e_value=8e-124) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:25720066-25721282 FORWARD LENGTH=294;; (*ITAG) Solyc01g068080.2.1 (e_value=4e-155) genomic_reference:SL2.40ch01 gene_region:69511671-69514962 transcript_region:SL2.40ch01:69511671..69514962- go_terms:GO:0044237,GO:0008152 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7MD06_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00045960g0010.1 protein AED:0.28 eAED:0.44 QI:0|0|0.5|1|1|0.5|2|159|77 NbS00045960g0014.1 protein AED:0.06 eAED:0.06 QI:160|0.94|1|1|0.55|0.57|19|354|1303; (*GB) gi|359479974|ref|XP_002273071.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257191 [Vitis vinifera];; (*SWP) sp|A7Z052|WDR6_BOVIN (e_value=2e-28) WD repeat-containing protein 6 OS=Bos taurus GN=WDR6 PE=2 SV=1;; (*TAIR) AT4G01860.2 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:801713-808018 REVERSE LENGTH=1308;; (*ITAG) Solyc01g068070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69490516-69508699 transcript_region:SL2.40ch01:69490516..69508699+ go_terms:GO:0000166 functional_description:"Wd-repeat protein (AHRD V1 *-*- C1FDE0_9CHLO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00008118g0007.1 protein AED:0.13 eAED:0.13 QI:369|0.91|0.92|1|0.58|0.61|13|261|368; (*GB) gi|224082148|ref|XP_002306582.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q803I2|ERGI3_DANRE (e_value=2e-130) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1;; (*TAIR) AT1G36050.2 (e_value=0.0) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386;; (*ITAG) Solyc04g072910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57470199-57481642 transcript_region:SL2.40ch04:57470199..57481642- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00008118g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|358008884|gb|AET99101.1| (e_value=2e-105) dehydration-responsive element-binding protein DREB4 [Solanum tuberosum];; (*SWP) sp|Q8H1E4|RAP24_ARATH (e_value=3e-54) Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1;; (*TAIR) AT1G78080.1 (e_value=2e-55) | Symbols: RAP2.4 | related to AP2 4 | chr1:29364790-29365794 FORWARD LENGTH=334;; (*ITAG) Solyc04g072900.1.1 (e_value=9e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57461458-57462252 transcript_region:SL2.40ch04:57461458..57462252+ go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00057082g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.37|0.22|1|0.5|0.33|9|0|352; (*GB) gi|16417958|gb|AAL18931.1|AF429985_1 (e_value=5e-150) arabinosidase ARA-1 [Solanum lycopersicum];; (*SWP) sp|Q9SG80|ASD1_ARATH (e_value=7e-121) Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1;; (*TAIR) AT3G10740.1 (e_value=5e-122) | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678;; (*ITAG) Solyc10g081120.1.1 (e_value=9e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61584069-61591793 transcript_region:SL2.40ch10:61584069..61591793- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase (AHRD V1 **** Q76LU4_SOLLC); contains Interpro domain(s) IPR017853 Glycoside hydrolase, catalytic core "; GO:0009044,GO:0046556 NbS00027734g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.63|1|0.8|0.81|11|229|386; (*GB) gi|350538549|ref|NP_001234604.1| (e_value=0.0) beta-amyrin synthase [Solanum lycopersicum];; (*SWP) sp|E7DN63|BAMS_SOLLC (e_value=0.0) Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1;; (*TAIR) AT1G78955.1 (e_value=5e-174) | Symbols: CAMS1 | camelliol C synthase 1 | chr1:29689153-29694255 REVERSE LENGTH=769;; (*ITAG) Solyc12g006530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1041051-1049001 transcript_region:SL2.40ch12:1041051..1049001+ go_terms:GO:0016866,GO:0003824 functional_description:"Cycloartenol synthase (AHRD V1 ***- D7LA92_ARALY); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0016866,GO:0003824 NbS00027734g0007.1 protein AED:0.71 eAED:0.71 QI:68|1|0.5|1|0|0|2|0|86 NbS00001824g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|349; (*GB) gi|302143874|emb|CBI22735.3| (e_value=8e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-17) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=5e-27) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc01g087510.1.1 (e_value=1e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74215693-74218969 transcript_region:SL2.40ch01:74215693..74218969- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001824g0003.1 protein AED:0.36 eAED:0.45 QI:0|1|0.5|1|1|1|4|0|202; (*GB) gi|255541296|ref|XP_002511712.1| (e_value=1e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45380.1 (e_value=2e-32) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr2:18699588-18703093 REVERSE LENGTH=494;; (*ITAG) Solyc01g091270.2.1 (e_value=4e-79) genomic_reference:SL2.40ch01 gene_region:76686901-76689861 transcript_region:SL2.40ch01:76686901..76689861- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 ***- B9DGW8_ARATH)"; NbS00001824g0008.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|1|1|2|0|118; (*ITAG) Solyc01g091270.2.1 (e_value=2e-11) genomic_reference:SL2.40ch01 gene_region:76686901-76689861 transcript_region:SL2.40ch01:76686901..76689861- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 ***- B9DGW8_ARATH)"; NbS00010985g0009.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|511|133; (*GB) gi|297737651|emb|CBI26852.3| (e_value=3e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q86A88|DYL_DICDI (e_value=5e-21) Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1;; (*TAIR) AT1G23220.1 (e_value=1e-62) | Symbols: | Dynein light chain type 1 family protein | chr1:8242614-8244136 FORWARD LENGTH=129;; (*ITAG) Solyc01g005460.2.1 (e_value=6e-79) genomic_reference:SL2.40ch01 gene_region:317899-320836 transcript_region:SL2.40ch01:317899..320836- go_terms:GO:0042803 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 ***- C1BWV4_ESOLU); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00010985g0010.1 protein AED:0.23 eAED:0.33 QI:37|0|0|1|0|0|7|0|311; (*GB) gi|121485004|gb|ABI18157.1| (e_value=4e-58) cytosolic phosphoglycerate kinase [Helianthus annuus];; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=3e-59) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=4e-58) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=4e-57) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00026758g0005.1 protein AED:0.17 eAED:0.19 QI:458|0.66|0.5|1|0.66|0.5|4|0|543; (*GB) gi|225430521|ref|XP_002283376.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=0.0) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00026758g0002.1 protein AED:0.55 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|64 NbS00027977g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|102; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*TAIR) AT5G23030.1 (e_value=4e-19) | Symbols: TET12 | tetraspanin12 | chr5:7726819-7727709 FORWARD LENGTH=264;; (*ITAG) Solyc03g114480.2.1 (e_value=8e-43) genomic_reference:SL2.40ch03 gene_region:58522878-58524482 transcript_region:SL2.40ch03:58522878..58524482- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00027977g0006.1 protein AED:0.32 eAED:0.32 QI:265|1|1|1|0.75|0.8|5|343|252; (*GB) gi|348162096|gb|AEP68099.1| (e_value=0.0) cell-growth defect factor 1 [Nicotiana benthamiana];; (*TAIR) AT5G23040.1 (e_value=3e-115) | Symbols: CDF1 | Protein of unknown function (DUF3353) | chr5:7729465-7730930 REVERSE LENGTH=258;; (*ITAG) Solyc03g114470.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:58517893-58522443 transcript_region:SL2.40ch03:58517893..58522443+ functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; NbS00027977g0009.1 protein AED:0.56 eAED:0.62 QI:0|0|0|1|0|0|2|0|75; (*GB) gi|348162096|gb|AEP68099.1| (e_value=2e-18) cell-growth defect factor 1 [Nicotiana benthamiana];; (*TAIR) AT5G23040.1 (e_value=2e-15) | Symbols: CDF1 | Protein of unknown function (DUF3353) | chr5:7729465-7730930 REVERSE LENGTH=258;; (*ITAG) Solyc03g114470.2.1 (e_value=2e-20) genomic_reference:SL2.40ch03 gene_region:58517893-58522443 transcript_region:SL2.40ch03:58517893..58522443+ functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; NbS00059746g0003.1 protein AED:0.01 eAED:0.01 QI:111|1|1|1|1|1|2|275|74; (*GB) gi|255547570|ref|XP_002514842.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G06010.1 (e_value=4e-15) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1823347-1823670 FORWARD LENGTH=78;; (*ITAG) Solyc04g056430.2.1 (e_value=7e-38) genomic_reference:SL2.40ch04 gene_region:53351767-53352332 transcript_region:SL2.40ch04:53351767..53352332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040551g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|359485422|ref|XP_002275844.2| (e_value=4e-50) PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=2e-45) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=2e-46) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc12g010810.1.1 (e_value=3e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3722630-3723262 transcript_region:SL2.40ch12:3722630..3723262+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00004396g0008.1 protein AED:0.13 eAED:0.13 QI:663|0.66|0.75|1|0.33|0.25|4|1498|500; (*GB) gi|255563429|ref|XP_002522717.1| (e_value=2e-114) Protein phosphatase 1 regulatory subunit, putative [Ricinus communis];; (*TAIR) AT4G03260.2 (e_value=2e-96) | Symbols: | Outer arm dynein light chain 1 protein | chr4:1429092-1431431 FORWARD LENGTH=677;; (*ITAG) Solyc07g053180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58964708-58968397 transcript_region:SL2.40ch07:58964708..58968397+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00004396g0002.1 protein AED:0.39 eAED:0.78 QI:57|-1|0|1|-1|1|1|530|167; (*GB) gi|255563429|ref|XP_002522717.1| (e_value=2e-37) Protein phosphatase 1 regulatory subunit, putative [Ricinus communis];; (*TAIR) AT4G03260.2 (e_value=2e-27) | Symbols: | Outer arm dynein light chain 1 protein | chr4:1429092-1431431 FORWARD LENGTH=677;; (*ITAG) Solyc07g053180.2.1 (e_value=6e-59) genomic_reference:SL2.40ch07 gene_region:58964708-58968397 transcript_region:SL2.40ch07:58964708..58968397+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00032978g0018.1 protein AED:0.04 eAED:0.04 QI:72|1|1|1|1|1|2|205|151; (*GB) gi|6009909|dbj|BAA85117.1| (e_value=1e-53) histone H2A-like protein [Solanum melongena];; (*SWP) sp|Q2HU65|H2A2_MEDTR (e_value=3e-54) Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1;; (*TAIR) AT5G02560.1 (e_value=1e-51) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc11g073250.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53355429-53355963 transcript_region:SL2.40ch11:53355429..53355963- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- C6TMV8_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00032978g0001.1 protein AED:0.30 eAED:0.30 QI:0|1|0.75|1|0|0|4|871|289; (*GB) gi|225435038|ref|XP_002281336.1| (e_value=8e-124) PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Vitis vinifera];; (*SWP) sp|Q9FJE6|PP437_ARATH (e_value=1e-105) Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1;; (*TAIR) AT5G59900.1 (e_value=8e-107) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24123983-24126706 REVERSE LENGTH=907;; (*ITAG) Solyc11g073270.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00032978g0010.1 protein AED:0.22 eAED:0.38 QI:0|0|0|1|1|1|2|0|168; (*GB) gi|57013921|ref|YP_173394.1| (e_value=1e-76) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=1e-74) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=7e-77) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00032978g0011.1 protein AED:0.36 eAED:0.88 QI:0|0|0|1|1|1|2|0|481; (*GB) gi|297746120|emb|CBI16176.3| (e_value=2e-175) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJE6|PP437_ARATH (e_value=2e-146) Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1;; (*TAIR) AT5G59900.1 (e_value=1e-147) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24123983-24126706 REVERSE LENGTH=907;; (*ITAG) Solyc11g073270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00032978g0007.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|82400146|gb|ABB72812.1| (e_value=2e-60) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=1e-61) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=4e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00032978g0019.1 protein AED:0.15 eAED:0.15 QI:240|1|1|1|0.5|0.66|3|427|139; (*GB) gi|351722307|ref|NP_001238519.1| (e_value=5e-91) uncharacterized protein LOC100499953 [Glycine max];; (*SWP) sp|Q9FVI1|ADF2_PETHY (e_value=8e-88) Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1;; (*TAIR) AT5G59890.1 (e_value=4e-88) | Symbols: ADF4, ATADF4 | actin depolymerizing factor 4 | chr5:24122545-24123596 FORWARD LENGTH=139;; (*ITAG) Solyc04g011370.2.1 (e_value=6e-92) genomic_reference:SL2.40ch04 gene_region:3845935-3848508 transcript_region:SL2.40ch04:3845935..3848508+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 2 (AHRD V1 **** Q541R7_PETHY); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00032978g0006.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|356547998|ref|XP_003542391.1| (e_value=5e-36) PREDICTED: uncharacterized protein LOC100814901 [Glycine max];; (*SWP) sp|O64847|U136_ARATH (e_value=3e-30) UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1;; (*TAIR) AT3G43520.1 (e_value=1e-32) | Symbols: | Transmembrane proteins 14C | chr3:15406088-15407699 FORWARD LENGTH=240;; (*ITAG) Solyc11g073240.1.1 (e_value=4e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53353841-53354590 transcript_region:SL2.40ch11:53353841..53354590+ go_terms:GO:0016020 functional_description:"Transmembrane protein 14C (AHRD V1 *-*- Q09JH3_ARGMO); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00032978g0025.1 protein AED:0.69 eAED:0.76 QI:0|0|0|0.75|0.66|0.5|4|0|96; (*GB) gi|255584774|ref|XP_002533105.1| (e_value=3e-30) cold-inducible RNA binding protein, putative [Ricinus communis];; (*TAIR) AT3G46020.1 (e_value=5e-30) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:16912511-16913250 REVERSE LENGTH=102;; (*ITAG) Solyc10g083240.1.1 (e_value=2e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:62415637-62418815 transcript_region:SL2.40ch10:62415637..62418815- go_terms:GO:0017091 functional_description:"RNA-binding protein (AHRD V1 **** Q941H9_TOBAC); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0017091 NbS00023925g0004.1 protein AED:0.21 eAED:0.21 QI:1030|0.75|0.66|1|0.7|0.66|21|0|1072; (*GB) gi|359473576|ref|XP_002264955.2| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Vitis vinifera];; (*SWP) sp|Q92620|PRP16_HUMAN (e_value=0.0) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2;; (*TAIR) AT5G13010.1 (e_value=0.0) | Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255;; (*ITAG) Solyc10g076910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59200223-59211124 transcript_region:SL2.40ch10:59200223..59211124- go_terms:GO:0004004,GO:0042802 functional_description:"Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein (AHRD V1 **** Q9LXT8_ARATH); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004,GO:0042802 NbS00007038g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|680; (*GB) gi|215400624|gb|ACJ66297.1| (e_value=0.0) phenylalanine ammonia-lyase 4 [Nicotiana tabacum];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=0.0) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc09g007920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1435451-1440492 transcript_region:SL2.40ch09:1435451..1440492+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00007038g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.88|0.85|1|0.96|0.92|27|0|961; (*GB) gi|255562045|ref|XP_002522031.1| (e_value=0.0) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*SWP) sp|Q9M8Y0|SEC_ARATH (e_value=0.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1;; (*TAIR) AT3G04240.1 (e_value=0.0) | Symbols: SEC | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1114187-1120722 REVERSE LENGTH=977;; (*ITAG) Solyc09g097830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67099611-67111955 transcript_region:SL2.40ch09:67099611..67111955+ go_terms:GO:0016262 functional_description:"TPR repeat protein (AHRD V1 **-- B0JK10_MICAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0016262 NbS00007038g0014.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|227; (*GB) gi|224120466|ref|XP_002331055.1| (e_value=5e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q52T38|ZDH22_ARATH (e_value=2e-37) S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1;; (*TAIR) AT5G20350.1 (e_value=1e-38) | Symbols: TIP1 | Ankyrin repeat family protein with DHHC zinc finger domain | chr5:6876772-6881102 FORWARD LENGTH=620;; (*ITAG) Solyc07g007430.2.1 (e_value=5e-67) genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016417,GO:0000035 NbS00007038g0005.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|198 NbS00007038g0007.1 protein AED:0.10 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|402; (*GB) gi|225430658|ref|XP_002268375.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Vitis vinifera];; (*SWP) sp|Q94JX6|PP391_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2;; (*TAIR) AT5G18390.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:6090954-6092333 FORWARD LENGTH=459;; (*ITAG) Solyc09g097840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67113261-67114673 transcript_region:SL2.40ch09:67113261..67114673+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LXU6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007038g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|388523071|gb|AFK49597.1| (e_value=4e-38) unknown [Lotus japonicus];; (*TAIR) AT2G37870.1 (e_value=8e-35) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc03g079880.2.1 (e_value=3e-21) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00032861g0003.1 protein AED:0.13 eAED:0.15 QI:203|1|0.5|1|0|0|2|0|334; (*GB) gi|194067759|dbj|BAG55007.1| (e_value=2e-131) adenylate isopentenyltransferase [Ipomoea nil];; (*SWP) sp|Q94ID2|IPT5_ARATH (e_value=1e-106) Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2;; (*TAIR) AT5G19040.1 (e_value=1e-107) | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 | chr5:6362389-6363381 REVERSE LENGTH=330;; (*ITAG) Solyc01g080150.2.1 (e_value=9e-173) genomic_reference:SL2.40ch01 gene_region:71838477-71840230 transcript_region:SL2.40ch01:71838477..71840230+ go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- B6JYB4_SCHJY); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00001689g0008.1 protein AED:0.17 eAED:0.19 QI:60|0.66|0.25|1|1|0.75|4|0|550; (*GB) gi|359481508|ref|XP_002274877.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251629 [Vitis vinifera];; (*TAIR) AT5G59830.2 (e_value=7e-76) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24105423-24107071 FORWARD LENGTH=425;; (*ITAG) Solyc09g010350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00001689g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.85|1|0.66|0.71|7|428|366; (*GB) gi|359481510|ref|XP_002274909.2| (e_value=1e-176) PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-57) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT2G37460.1 (e_value=3e-157) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr2:15726667-15729010 REVERSE LENGTH=380;; (*ITAG) Solyc09g010360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3740101-3743295 transcript_region:SL2.40ch09:3740101..3743295- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00020859g0017.1 protein AED:0.12 eAED:0.12 QI:0|1|0.90|1|0.4|0.45|11|1428|231; (*GB) gi|14594921|emb|CAC43321.1| (e_value=2e-117) putative beta proteasome subunit [Nicotiana tabacum];; (*SWP) sp|O23710|PSB7A_ARATH (e_value=5e-108) Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2;; (*TAIR) AT3G27430.2 (e_value=4e-109) | Symbols: PBB1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:10152910-10155052 FORWARD LENGTH=273;; (*ITAG) Solyc04g024420.2.1 (e_value=2e-113) genomic_reference:SL2.40ch04 gene_region:11945503-11951273 transcript_region:SL2.40ch04:11945503..11951273- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- A9PCK6_POPTR); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00020859g0019.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|80 NbS00020859g0013.1 protein AED:0.03 eAED:0.03 QI:139|0.66|0.42|1|0.33|0.42|7|0|710; (*GB) gi|359473160|ref|XP_002282178.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255955 [Vitis vinifera];; (*TAIR) AT3G01680.1 (e_value=7e-82) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740;; (*ITAG) Solyc05g013860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7250524-7253733 transcript_region:SL2.40ch05:7250524..7253733- functional_description:"Sieve element-occluding protein 3 (AHRD V1 **-- B5THF7_MEDTR)"; NbS00020859g0021.1 protein AED:0.11 eAED:0.13 QI:0|0.4|0.16|1|0.4|0.16|6|0|615; (*GB) gi|255547996|ref|XP_002515055.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*TAIR) AT1G13130.1 (e_value=0.0) | Symbols: | Cellulase (glycosyl hydrolase family 5) protein | chr1:4474726-4477820 FORWARD LENGTH=552;; (*ITAG) Solyc08g066810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52872134-52875657 transcript_region:SL2.40ch08:52872134..52875657- go_terms:GO:0005975 functional_description:"Glycosyl hydrolase family 5 protein/cellulase (AHRD V1 **-- A8NVS8_COPC7); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00020859g0024.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.8|0.25|0.4|5|0|265; (*GB) gi|113205399|gb|AAU90302.2| (e_value=8e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=8e-30) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00041835g0001.1 protein AED:0.21 eAED:0.21 QI:295|0.8|0.45|0.90|1|1|11|0|684; (*GB) gi|239056181|emb|CAQ58617.1| (e_value=0.0) transferase, transferring glycosyl groups / unknown protein [Vitis vinifera];; (*SWP) sp|Q9ZVI7|GAUT7_ARATH (e_value=0.0) Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2;; (*TAIR) AT2G38650.2 (e_value=0.0) | Symbols: GAUT7 | galacturonosyltransferase 7 | chr2:16161856-16165523 REVERSE LENGTH=619;; (*ITAG) Solyc10g074650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57519701-57532985 transcript_region:SL2.40ch10:57519701..57532985- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- A2Q3W2_MEDTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00006379g0022.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.8|0.8|1|1|5|273|133; (*GB) gi|76161008|gb|ABA40467.1| (e_value=5e-73) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=2e-67) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1;; (*TAIR) AT2G20450.1 (e_value=1e-68) | Symbols: | Ribosomal protein L14 | chr2:8813923-8815071 FORWARD LENGTH=134;; (*ITAG) Solyc09g066430.2.1 (e_value=6e-79) genomic_reference:SL2.40ch09 gene_region:60447742-60449945 transcript_region:SL2.40ch09:60447742..60449945+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L14 (AHRD V1 ***- D7MEJ2_ARALY); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00006379g0029.1 protein AED:0.15 eAED:0.16 QI:0|0.44|0.6|1|0.88|0.9|10|179|1260; (*GB) gi|255577952|ref|XP_002529848.1| (e_value=0.0) DNA repair and recombination protein RAD26, putative [Ricinus communis];; (*SWP) sp|Q9UR24|RHP26_SCHPO (e_value=0.0) DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp26 PE=2 SV=1;; (*TAIR) AT2G18760.1 (e_value=0.0) | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129154-8133502 FORWARD LENGTH=1187;; (*ITAG) Solyc09g066480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60493554-60502291 transcript_region:SL2.40ch09:60493554..60502291+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--- CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00006379g0031.1 protein AED:0.02 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|611; (*GB) gi|255577944|ref|XP_002529844.1| (e_value=0.0) DELLA protein GAIP, putative [Ricinus communis];; (*SWP) sp|Q9M384|SCR_ARATH (e_value=1e-142) Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1;; (*TAIR) AT3G54220.1 (e_value=1e-143) | Symbols: SCR, SGR1 | GRAS family transcription factor | chr3:20070550-20072625 FORWARD LENGTH=653;; (*ITAG) Solyc09g066450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60462297-60463799 transcript_region:SL2.40ch09:60462297..60463799- go_terms:GO:0042803 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0042803 NbS00006379g0026.1 protein AED:0.23 eAED:0.23 QI:228|0.8|0.66|1|1|1|6|0|266; (*GB) gi|330541520|gb|AEC32109.1| (e_value=3e-134) ABC transporter family protein [Camellia sinensis];; (*SWP) sp|Q3EDJ0|AB19I_ARATH (e_value=3e-118) ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1;; (*TAIR) AT1G03905.1 (e_value=2e-119) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:993478-995594 FORWARD LENGTH=290;; (*ITAG) Solyc09g066470.2.1 (e_value=3e-143) genomic_reference:SL2.40ch09 gene_region:60487510-60491353 transcript_region:SL2.40ch09:60487510..60491353- go_terms:GO:0015424 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- CBIO2_STRPF); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015424 NbS00006379g0024.1 protein AED:0.32 eAED:0.34 QI:0|0.84|0.85|1|0.84|0.85|14|0|476; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28540.1 (e_value=0.0) | Symbols: CKL6, PAPK1 | casein kinase I-like 6 | chr4:14107284-14110511 FORWARD LENGTH=479;; (*ITAG) Solyc09g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60450504-60459771 transcript_region:SL2.40ch09:60450504..60459771- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00006379g0034.1 protein AED:0.35 eAED:0.38 QI:0|0.5|0.33|1|0.5|0.66|3|0|290; (*GB) gi|255577954|ref|XP_002529849.1| (e_value=4e-128) Adaptin ear-binding coat-associated protein, putative [Ricinus communis];; (*SWP) sp|Q681Q7|Y1390_ARATH (e_value=3e-99) Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1;; (*TAIR) AT1G03900.1 (e_value=2e-100) | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 | chr1:991252-992852 FORWARD LENGTH=272;; (*ITAG) Solyc09g066490.2.1 (e_value=1e-154) genomic_reference:SL2.40ch09 gene_region:60502769-60505289 transcript_region:SL2.40ch09:60502769..60505289- go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 2 (AHRD V1 **** B4FAZ6_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00006379g0032.1 protein AED:0.37 eAED:0.38 QI:0|0.91|0.76|1|0.91|0.92|13|0|539; (*GB) gi|7339534|emb|CAB82852.1| (e_value=0.0) protein kinase MK6 [Mesembryanthemum crystallinum];; (*SWP) sp|Q2LZZ7|TRC_DROPS (e_value=6e-147) Serine/threonine-protein kinase tricorner OS=Drosophila pseudoobscura pseudoobscura GN=trc PE=3 SV=1;; (*TAIR) AT2G20470.1 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr2:8826277-8829497 REVERSE LENGTH=569;; (*ITAG) Solyc09g066460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60465187-60480440 transcript_region:SL2.40ch09:60465187..60480440- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010324g0011.1 protein AED:0.13 eAED:0.13 QI:118|1|1|1|0.63|0.58|12|284|363; (*GB) gi|147789144|emb|CAN60339.1| (e_value=0.0) hypothetical protein VITISV_031318 [Vitis vinifera];; (*SWP) sp|Q9LJH5|GLO4_ARATH (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1;; (*TAIR) AT3G14130.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4685844-4687852 REVERSE LENGTH=363;; (*ITAG) Solyc03g122170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64144705-64148560 transcript_region:SL2.40ch03:64144705..64148560+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- B2WJB5_PYRTR); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00010324g0012.1 protein AED:0.16 eAED:0.16 QI:202|1|1|1|1|1|12|406|418; (*GB) gi|82400162|gb|ABB72820.1| (e_value=0.0) oligouridylate binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=4e-60) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT1G17370.1 (e_value=0.0) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419;; (*ITAG) Solyc03g122180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64148757-64153338 transcript_region:SL2.40ch03:64148757..64153338- go_terms:GO:0003730 functional_description:"mRNA 3-UTR binding protein (AHRD V1 **** B6T3L2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003730 NbS00010324g0004.1 protein AED:0.24 eAED:0.26 QI:351|0|0|1|1|1|4|0|276; (*GB) gi|389986111|gb|AFL46173.1| (e_value=4e-110) jasmonate ZIM domain protein h [Nicotiana attenuata];; (*ITAG) Solyc03g122190.2.1 (e_value=4e-69) genomic_reference:SL2.40ch03 gene_region:64155650-64158036 transcript_region:SL2.40ch03:64155650..64158036- go_terms:GO:0005515 functional_description:"Jasmonate ZIM domain 2 (AHRD V1 **-- C7SCY2_CATRO); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00010324g0006.1 protein AED:0.20 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=7e-28) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=2e-29) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=9e-26) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc11g008510.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2684326-2686166 transcript_region:SL2.40ch11:2684326..2686166+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0005840 NbS00023799g0015.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.72|0.83|12|461|392; (*GB) gi|255588292|ref|XP_002534559.1| (e_value=0.0) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|P49599|P2C57_ARATH (e_value=3e-178) Protein phosphatase 2C 57 OS=Arabidopsis thaliana GN=PPH1 PE=2 SV=2;; (*TAIR) AT4G27800.1 (e_value=2e-179) | Symbols: TAP38, PPH1 | thylakoid-associated phosphatase 38 | chr4:13852013-13854091 REVERSE LENGTH=388;; (*ITAG) Solyc03g082960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46362082-46365783 transcript_region:SL2.40ch03:46362082..46365783- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00023799g0005.1 protein AED:0.24 eAED:0.36 QI:13|0|0.33|1|1|0.66|3|0|136; (*GB) gi|225425898|ref|XP_002266725.1| (e_value=7e-55) PREDICTED: uncharacterized protein LOC100244197 [Vitis vinifera];; (*TAIR) AT5G24314.2 (e_value=8e-48) | Symbols: PTAC7 | plastid transcriptionally active7 | chr5:8277750-8279099 FORWARD LENGTH=169;; (*ITAG) Solyc03g082970.2.1 (e_value=9e-75) genomic_reference:SL2.40ch03 gene_region:46366017-46370485 transcript_region:SL2.40ch03:46366017..46370485- functional_description:"PDE225/PTAC7 (AHRD V1 ***- D7M329_ARALY)"; NbS00023799g0008.1 protein AED:0.00 eAED:0.00 QI:87|1|1|1|0.5|0.66|3|341|77; (*ITAG) Solyc06g052020.2.1 (e_value=8e-15) genomic_reference:SL2.40ch06 gene_region:32168342-32169633 transcript_region:SL2.40ch06:32168342..32169633- functional_description:"Unknown Protein (AHRD V1)"; NbS00023799g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0|1|0.33|0.5|4|0|942; (*GB) gi|225455336|ref|XP_002276600.1| (e_value=0.0) PREDICTED: importin subunit beta-1-like [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=0.0) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT5G53480.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00037099g0009.1 protein AED:0.04 eAED:0.05 QI:18|0.77|0.6|1|0.88|0.8|10|1295|547; (*GB) gi|239819394|gb|ACS28251.1| (e_value=0.0) cell division control protein [Nicotiana glutinosa];; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00037099g0012.1 protein AED:0.08 eAED:0.08 QI:15|0|0.33|1|0.5|0|3|0|263; (*GB) gi|388506856|gb|AFK41494.1| (e_value=1e-142) unknown [Lotus japonicus];; (*SWP) sp|Q9LRP1|NPS13_ARATH (e_value=6e-136) Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1;; (*TAIR) AT3G17440.1 (e_value=4e-137) | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 | chr3:5969909-5972290 REVERSE LENGTH=269;; (*ITAG) Solyc12g098950.1.1 (e_value=7e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64632421-64638462 transcript_region:SL2.40ch12:64632421..64638462+ go_terms:GO:0016020 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6U1B4_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00035202g0004.1 protein AED:0.16 eAED:0.16 QI:35|1|1|1|0.71|0.5|8|394|188; (*GB) gi|239586450|gb|ACR83571.1| (e_value=3e-108) pAPX [Solanum nigrum];; (*SWP) sp|Q42564|APX3_ARATH (e_value=4e-93) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1;; (*TAIR) AT4G35000.1 (e_value=3e-94) | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16665007-16667541 REVERSE LENGTH=287;; (*ITAG) Solyc01g111510.2.1 (e_value=6e-111) genomic_reference:SL2.40ch01 gene_region:89495534-89500705 transcript_region:SL2.40ch01:89495534..89500705- go_terms:GO:0016688 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q8W4V7_CAPAN); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0016688 NbS00027112g0003.1 protein AED:0.16 eAED:0.21 QI:0|0.33|0.25|1|0|0.5|4|0|245; (*GB) gi|359807658|ref|NP_001240914.1| (e_value=6e-92) uncharacterized protein LOC100787073 precursor [Glycine max];; (*SWP) sp|Q42517|PERN_ARMRU (e_value=1e-90) Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1;; (*TAIR) AT5G19890.1 (e_value=1e-86) | Symbols: | Peroxidase superfamily protein | chr5:6724372-6725877 REVERSE LENGTH=328;; (*ITAG) Solyc01g006310.2.1 (e_value=6e-128) genomic_reference:SL2.40ch01 gene_region:899147-902371 transcript_region:SL2.40ch01:899147..902371+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- D7LZC8_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00055228g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|110826035|gb|ABH01084.1| (e_value=3e-51) putative ROX1 [Nicotiana tabacum];; (*ITAG) Solyc02g077710.1.1 (e_value=4e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37172109-37173137 transcript_region:SL2.40ch02:37172109..37173137+ functional_description:"E6-2 protein kinase (AHRD V1 *-*- B6E139_GOSHI)"; NbS00054372g0004.1 protein AED:0.37 eAED:0.40 QI:0|1|0.5|1|1|1|4|0|149; (*GB) gi|225451445|ref|XP_002269795.1| (e_value=1e-69) PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera];; (*SWP) sp|P92792|TOM20_SOLTU (e_value=5e-67) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=9e-49) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g094140.2.1 (e_value=9e-74) genomic_reference:SL2.40ch02 gene_region:49346265-49353364 transcript_region:SL2.40ch02:49346265..49353364+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00054372g0005.1 protein AED:0.51 eAED:1.00 QI:0|0|0|1|1|1|2|0|73; (*GB) gi|13631844|sp|P92792.1|TOM20_SOLTU (e_value=2e-27) RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit;; (*SWP) sp|P92792|TOM20_SOLTU (e_value=5e-29) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT5G40930.1 (e_value=5e-21) | Symbols: TOM20-4 | translocase of outer membrane 20-4 | chr5:16404523-16405825 FORWARD LENGTH=187;; (*ITAG) Solyc02g068130.2.1 (e_value=2e-29) genomic_reference:SL2.40ch02 gene_region:32744250-32750308 transcript_region:SL2.40ch02:32744250..32750308+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00041158g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|644; (*GB) gi|359479007|ref|XP_002281519.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248374 [Vitis vinifera];; (*TAIR) AT2G39380.1 (e_value=8e-180) | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70 family protein H2 | chr2:16447096-16449009 REVERSE LENGTH=637;; (*ITAG) Solyc06g075610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43387130-43389001 transcript_region:SL2.40ch06:43387130..43389001- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_DROME); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00007844g0009.1 protein AED:0.30 eAED:0.33 QI:38|0.33|0.42|1|0.5|0.42|7|0|366; (*GB) gi|225446455|ref|XP_002275230.1| (e_value=1e-105) PREDICTED: transcription activator GLK1-like [Vitis vinifera];; (*SWP) sp|Q9SIV3|GLK1_ARATH (e_value=2e-61) Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2;; (*TAIR) AT2G20570.1 (e_value=2e-62) | Symbols: GPRI1, GLK1, ATGLK1 | GBF's pro-rich region-interacting factor 1 | chr2:8855486-8857522 FORWARD LENGTH=420;; (*ITAG) Solyc07g053630.2.1 (e_value=3e-100) genomic_reference:SL2.40ch07 gene_region:59386217-59390311 transcript_region:SL2.40ch07:59386217..59390311- go_terms:GO:0003700,GO:0010843 functional_description:"Response regulator (AHRD V1 *--- A1A6A6_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700,GO:0010843 NbS00015796g0011.1 protein AED:0.00 eAED:0.00 QI:225|1|0.5|1|1|1|2|0|524; (*GB) gi|147859667|emb|CAN83108.1| (e_value=5e-102) hypothetical protein VITISV_026570 [Vitis vinifera];; (*TAIR) AT2G33320.1 (e_value=2e-71) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602;; (*ITAG) Solyc09g090920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65673197-65675359 transcript_region:SL2.40ch09:65673197..65675359- functional_description:"C2 domain-containing protein (AHRD V1 *-*- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00015796g0012.1 protein AED:0.00 eAED:0.00 QI:86|1|1|1|1|1|5|216|293; (*GB) gi|365818535|gb|AEX00356.1| (e_value=2e-155) IAA13 [Solanum lycopersicum];; (*SWP) sp|Q38831|IAA13_ARATH (e_value=6e-77) Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2;; (*TAIR) AT2G33310.3 (e_value=4e-78) | Symbols: IAA13 | auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=246;; (*ITAG) Solyc09g090910.1.1 (e_value=1e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65662705-65665621 transcript_region:SL2.40ch09:65662705..65665621- go_terms:GO:0005515,GO:0016564 functional_description:"Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0016564 NbS00015796g0010.1 protein AED:0.20 eAED:0.20 QI:380|0.88|0.9|1|0.77|0.8|10|536|483; (*GB) gi|296083732|emb|CBI23721.3| (e_value=4e-165) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=2e-18) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT5G43960.1 (e_value=7e-95) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450;; (*ITAG) Solyc09g090940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65682661-65689282 transcript_region:SL2.40ch09:65682661..65689282- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00015796g0013.1 protein AED:0.03 eAED:0.03 QI:334|0.8|0.66|1|1|1|6|420|386; (*GB) gi|296083733|emb|CBI23722.3| (e_value=2e-108) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04530.1 (e_value=7e-37) | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1234456-1235895 REVERSE LENGTH=310;; (*ITAG) Solyc09g090930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65677871-65682183 transcript_region:SL2.40ch09:65677871..65682183+ go_terms:GO:0005488,GO:0005622 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00027948g0002.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0|0.75|1|1|4|0|386; (*GB) gi|2497543|sp|Q42954.1|KPYC_TOBAC (e_value=0.0) RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK;; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G56350.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:22820254-22822529 REVERSE LENGTH=498;; (*ITAG) Solyc01g049650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:40681621-40683865 transcript_region:SL2.40ch01:40681621..40683865+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- B9SBM7_RICCO); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00055425g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|78; (*ITAG) Solyc06g060210.1.1 (e_value=5e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00055425g0003.1 protein AED:0.29 eAED:0.29 QI:186|0.8|0.90|1|0.9|0.81|11|244|397; (*GB) gi|11559260|dbj|BAB18760.1| (e_value=0.0) beta-cyanoalanine synthase [Solanum tuberosum];; (*SWP) sp|P32260|CYSKP_SPIOL (e_value=3e-141) Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2;; (*TAIR) AT3G61440.1 (e_value=0.0) | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368;; (*ITAG) Solyc10g012370.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5012119-5020595 transcript_region:SL2.40ch10:5012119..5020595- go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q76MX2_SOLTU); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00003484g0006.1 protein AED:0.14 eAED:0.14 QI:240|0.76|0.85|0.92|0.84|0.81|27|206|1017; (*GB) gi|350535204|ref|NP_001233926.1| (e_value=0.0) insulin degrading enzyme [Solanum lycopersicum];; (*SWP) sp|O22941|PXM16_ARATH (e_value=0.0) Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1;; (*TAIR) AT2G41790.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr2:17429453-17436110 REVERSE LENGTH=970;; (*ITAG) Solyc04g015690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5978334-6005712 transcript_region:SL2.40ch04:5978334..6005712+ go_terms:GO:0048408,GO:0042803 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q93YG9_SOLLC); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0048408,GO:0042803 NbS00012784g0014.1 protein AED:0.20 eAED:0.21 QI:0|0.66|0.56|0.87|0.53|0.62|16|0|465; (*GB) gi|224081481|ref|XP_002306428.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9EP69|SAC1_MOUSE (e_value=7e-78) Phosphatidylinositide phosphatase SAC1 OS=Mus musculus GN=Sacm1l PE=2 SV=1;; (*TAIR) AT5G66020.1 (e_value=0.0) | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | Phosphoinositide phosphatase family protein | chr5:26401193-26404691 REVERSE LENGTH=593;; (*ITAG) Solyc02g082750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40969533-40977519 transcript_region:SL2.40ch02:40969533..40977519- go_terms:GO:0004439,GO:0043812 functional_description:"Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439,GO:0043812 NbS00012784g0015.1 protein AED:0.24 eAED:0.24 QI:310|0.71|0.75|0.87|0.85|0.87|8|0|437; (*GB) gi|2459684|gb|AAB71764.1| (e_value=0.0) catalase 1 [Nicotiana tabacum];; (*SWP) sp|P49315|CATA1_NICPL (e_value=0.0) Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc02g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40980455-40984836 transcript_region:SL2.40ch02:40980455..40984836- go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** O24511_TOBAC); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00004460g0009.1 protein AED:0.40 eAED:0.49 QI:0|0.25|0.2|0.8|1|1|5|0|165; (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=1e-69) BAC19.12 [Solanum lycopersicum];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=3e-60) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT5G66730.1 (e_value=1e-65) | Symbols: | C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500;; (*ITAG) Solyc02g085580.2.1 (e_value=4e-72) genomic_reference:SL2.40ch02 gene_region:42989617-42992448 transcript_region:SL2.40ch02:42989617..42992448+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU5_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00004460g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|225439346|ref|XP_002270321.1| (e_value=0.0) PREDICTED: fasciclin-like arabinogalactan protein 17 [Vitis vinifera];; (*SWP) sp|Q66GR0|FLA17_ARATH (e_value=0.0) Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1;; (*TAIR) AT5G06390.1 (e_value=0.0) | Symbols: FLA17 | FASCICLIN-like arabinogalactan protein 17 precursor | chr5:1952939-1955047 FORWARD LENGTH=458;; (*ITAG) Solyc10g081720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62066241-62069437 transcript_region:SL2.40ch10:62066241..62069437+ functional_description:"Fasciclin-like arabinogalactan protein 14 (AHRD V1 ***- A9XTL9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00004460g0012.1 protein AED:0.17 eAED:0.17 QI:146|0.85|0.87|1|0.85|0.87|8|256|399; (*GB) gi|224138254|ref|XP_002322768.1| (e_value=4e-128) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=3e-115) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=2e-116) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc10g081710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62050374-62054006 transcript_region:SL2.40ch10:62050374..62054006+ go_terms:GO:0008270 functional_description:"RING finger protein 43 (AHRD V1 *-*- RNF43_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018917g0002.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|1|1|7|438|219; (*GB) gi|358249358|ref|NP_001240041.1| (e_value=1e-121) uncharacterized protein LOC100803404 [Glycine max];; (*SWP) sp|Q93WI0|STR12_ARATH (e_value=2e-92) Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1;; (*TAIR) AT5G19370.1 (e_value=1e-93) | Symbols: | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein | chr5:6524247-6526629 REVERSE LENGTH=299;; (*ITAG) Solyc12g099800.1.1 (e_value=8e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65135132-65139096 transcript_region:SL2.40ch12:65135132..65139096- go_terms:GO:0016853 functional_description:"Rhodanese-like domain containing protein (AHRD V1 *--- B1XHS0_SYNP2); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0016853 NbS00018917g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.75|1|0.85|0.62|8|0|491; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc12g099790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65130565-65133955 transcript_region:SL2.40ch12:65130565..65133955+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 17 (AHRD V1 ***- Q6KC53_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00055889g0004.1 protein AED:0.06 eAED:0.14 QI:0|0|0|1|0.5|0.66|3|0|334; (*GB) gi|307940738|gb|ADN95983.1| (e_value=1e-107) G-strand specific single-stranded telomere-binding protein 1 [Nicotiana tabacum];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=7e-38) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT3G13224.2 (e_value=4e-72) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4254848-4256621 FORWARD LENGTH=358;; (*ITAG) Solyc07g045240.2.1 (e_value=6e-100) genomic_reference:SL2.40ch07 gene_region:55694997-55697651 transcript_region:SL2.40ch07:55694997..55697651+ go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00012877g0003.1 protein AED:0.21 eAED:0.29 QI:0|1|0.83|1|0.6|0.66|6|459|137; (*GB) gi|356533295|ref|XP_003535201.1| (e_value=1e-72) PREDICTED: ras-related protein RABC2a-like [Glycine max];; (*SWP) sp|O49841|RAC2A_ARATH (e_value=8e-73) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=6e-74) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc10g086310.1.1 (e_value=9e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64502213-64503613 transcript_region:SL2.40ch10:64502213..64503613- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00014807g0027.1 protein AED:0.11 eAED:0.11 QI:95|1|1|1|0.4|0.5|6|277|364; (*ITAG) Solyc05g050740.2.1 (e_value=1e-93) genomic_reference:SL2.40ch05 gene_region:60018960-60028258 transcript_region:SL2.40ch05:60018960..60028258+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014807g0022.1 protein AED:0.29 eAED:0.29 QI:179|0.5|0.66|1|1|1|3|0|368; (*GB) gi|255541568|ref|XP_002511848.1| (e_value=3e-153) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2D2|YU88_ARATH (e_value=1e-126) UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana GN=At3g61320 PE=2 SV=2;; (*TAIR) AT3G61320.1 (e_value=8e-128) | Symbols: | Bestrophin-like protein | chr3:22694002-22695474 FORWARD LENGTH=410;; (*ITAG) Solyc05g049900.2.1 (e_value=3e-159) genomic_reference:SL2.40ch05 gene_region:58886253-58890184 transcript_region:SL2.40ch05:58886253..58890184+ functional_description:"YneE (AHRD V1 **-- D4F0H3_EDWTA); contains Interpro domain(s) IPR007913 Uncharacterised protein family UPF0187 "; NbS00014807g0023.1 protein AED:0.32 eAED:0.32 QI:358|1|1|1|0.5|0.33|3|329|158; (*GB) gi|224127660|ref|XP_002320129.1| (e_value=4e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT4G00525.1 (e_value=3e-14) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:231862-232769 FORWARD LENGTH=140;; (*ITAG) Solyc05g049940.2.1 (e_value=7e-44) genomic_reference:SL2.40ch05 gene_region:58931871-58935359 transcript_region:SL2.40ch05:58931871..58935359+ functional_description:"T1N6.11 related (AHRD V1 ***- Q2HVL0_MEDTR)"; NbS00014807g0003.1 protein AED:0.73 eAED:0.73 QI:0|1|0.5|1|0|0|2|74|73; (*GB) gi|330318563|gb|AEC10953.1| (e_value=2e-44) ubiquitin-like protein [Camellia sinensis];; (*SWP) sp|Q9FGZ9|UBL5_ARATH (e_value=3e-45) Ubiquitin-like protein 5 OS=Arabidopsis thaliana GN=UBL5 PE=1 SV=1;; (*TAIR) AT5G42300.1 (e_value=3e-46) | Symbols: UBL5 | ubiquitin-like protein 5 | chr5:16913611-16913832 REVERSE LENGTH=73; NbS00014807g0032.1 protein AED:0.35 eAED:0.35 QI:0|0.4|0.16|1|0.6|0.66|6|0|232; (*GB) gi|225453444|ref|XP_002275584.1| (e_value=7e-63) PREDICTED: uncharacterized protein LOC100247848 [Vitis vinifera];; (*TAIR) AT3G60450.1 (e_value=2e-64) | Symbols: | Phosphoglycerate mutase family protein | chr3:22340982-22342187 FORWARD LENGTH=274;; (*ITAG) Solyc05g050800.2.1 (e_value=4e-127) genomic_reference:SL2.40ch05 gene_region:60131934-60136497 transcript_region:SL2.40ch05:60131934..60136497- functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C3SAD0_BRADI); contains Interpro domain(s) IPR012398 PRIB5 "; NbS00014807g0005.1 protein AED:0.41 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|225454190|ref|XP_002272636.1| (e_value=1e-25) PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera];; (*ITAG) Solyc05g049880.2.1 (e_value=6e-52) genomic_reference:SL2.40ch05 gene_region:58766954-58775362 transcript_region:SL2.40ch05:58766954..58775362- functional_description:"Unknown Protein (AHRD V1)"; NbS00014807g0033.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|1|1|3|0|155; (*GB) gi|225454190|ref|XP_002272636.1| (e_value=7e-39) PREDICTED: uncharacterized protein LOC100244723 [Vitis vinifera];; (*TAIR) AT1G01730.1 (e_value=2e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:271002-271872 FORWARD LENGTH=224;; (*ITAG) Solyc05g049880.2.1 (e_value=4e-69) genomic_reference:SL2.40ch05 gene_region:58766954-58775362 transcript_region:SL2.40ch05:58766954..58775362- functional_description:"Unknown Protein (AHRD V1)"; NbS00003736g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.88|1|1|1|9|0|446; (*GB) gi|225463514|ref|XP_002264198.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=3e-36) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT3G13340.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:4332370-4334603 FORWARD LENGTH=447;; (*ITAG) Solyc10g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:586250-591686 transcript_region:SL2.40ch10:586250..591686- go_terms:GO:0055114 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7L1D2_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0055114 NbS00003007g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.4|1|1|5|0|101 NbS00014216g0002.1 protein AED:0.01 eAED:0.01 QI:522|1|1|1|1|1|2|325|71 NbS00029457g0012.1 protein AED:0.19 eAED:0.21 QI:0|0.77|0.6|1|0.55|0.5|10|0|558; (*GB) gi|297591948|gb|ACJ05642.2| (e_value=0.0) potassium channel protein NKT5 [Nicotiana tabacum];; (*SWP) sp|P92960|KAT3_ARATH (e_value=0.0) Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1;; (*TAIR) AT4G32650.3 (e_value=0.0) | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel in Arabidopsis thaliana 3 | chr4:15751482-15754797 REVERSE LENGTH=661;; (*ITAG) Solyc08g068000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54275241-54280148 transcript_region:SL2.40ch08:54275241..54280148- go_terms:GO:0005242,GO:0030551 functional_description:"Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 (AHRD V1 *-** HCN2_HUMAN); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242,GO:0030551 NbS00029457g0001.1 protein AED:0.32 eAED:0.37 QI:0|0|0.16|0.5|1|1|6|628|180; (*GB) gi|356515513|ref|XP_003526444.1| (e_value=1e-97) PREDICTED: uncharacterized protein LOC100813647 [Glycine max];; (*TAIR) AT2G25730.2 (e_value=9e-90) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068010.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbS00029457g0010.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|5|0|634; (*GB) gi|225444712|ref|XP_002278292.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc08g067990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54264933-54267730 transcript_region:SL2.40ch08:54264933..54267730+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6SZ82_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00010644g0007.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.75|0.8|5|328|253; (*GB) gi|255556015|ref|XP_002519042.1| (e_value=3e-140) protein binding protein, putative [Ricinus communis];; (*TAIR) AT3G47160.1 (e_value=4e-109) | Symbols: | RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245;; (*ITAG) Solyc02g078460.2.1 (e_value=2e-157) genomic_reference:SL2.40ch02 gene_region:37699862-37704464 transcript_region:SL2.40ch02:37699862..37704464- go_terms:GO:0008270 functional_description:"Ring finger protein 141 (AHRD V1 *-*- Q28I63_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010644g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|147787729|emb|CAN60831.1| (e_value=6e-41) hypothetical protein VITISV_004737 [Vitis vinifera];; (*ITAG) Solyc10g051090.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00013859g0012.1 protein AED:0.09 eAED:0.09 QI:340|0.88|0.89|1|0.96|0.89|28|0|1233; (*GB) gi|359486235|ref|XP_003633418.1| (e_value=0.0) PREDICTED: cullin-associated NEDD8-dissociated protein 1-like [Vitis vinifera];; (*SWP) sp|Q8L5Y6|CAND1_ARATH (e_value=0.0) Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1;; (*TAIR) AT2G02560.2 (e_value=0.0) | Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE | cullin-associated and neddylation dissociated | chr2:690345-697342 FORWARD LENGTH=1217;; (*ITAG) Solyc01g103010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83433700-83447869 transcript_region:SL2.40ch01:83433700..83447869+ go_terms:GO:0017025 functional_description:"Cullin-associated NEDD8-dissociated protein 2 (AHRD V1 ***- B0WPV6_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017025 NbS00013859g0011.1 protein AED:0.20 eAED:0.20 QI:222|0.85|0.75|1|1|1|8|299|299; (*GB) gi|359486247|ref|XP_002269518.2| (e_value=9e-152) PREDICTED: survival of motor neuron-related-splicing factor 30-like [Vitis vinifera];; (*SWP) sp|O75940|SPF30_HUMAN (e_value=2e-13) Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1;; (*TAIR) AT2G02570.4 (e_value=5e-144) | Symbols: | nucleic acid binding;RNA binding | chr2:698361-700794 REVERSE LENGTH=300;; (*ITAG) Solyc01g103020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83450122-83456095 transcript_region:SL2.40ch01:83450122..83456095+ go_terms:GO:0005515 functional_description:"Survival of motor neuron-related-splicing factor 30 (AHRD V1 ***- C1BW46_ESOLU); contains Interpro domain(s) IPR018351 Tudor subgroup "; GO:0005515 NbS00013859g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.85|0.73|1|0.64|0.73|15|379|640; (*GB) gi|359486202|ref|XP_002268594.2| (e_value=0.0) PREDICTED: ATP-dependent Clp protease ATP-binding subunit ClpX-like [Vitis vinifera];; (*SWP) sp|A5FX05|CLPX_ACICJ (e_value=3e-107) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Acidiphilium cryptum (strain JF-5) GN=clpX PE=3 SV=1;; (*TAIR) AT5G49840.1 (e_value=6e-180) | Symbols: | ATP-dependent Clp protease | chr5:20255243-20259035 FORWARD LENGTH=608;; (*ITAG) Solyc01g102990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83404941-83414533 transcript_region:SL2.40ch01:83404941..83414533+ go_terms:GO:0005524,GO:0017111,GO:0006457 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 ***- B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0005524,GO:0017111,GO:0006457 NbS00041452g0007.1 protein AED:0.24 eAED:0.24 QI:192|0.83|0.76|1|0.75|0.69|13|0|908; (*GB) gi|356542573|ref|XP_003539741.1| (e_value=4e-98) PREDICTED: uncharacterized protein LOC100801880 [Glycine max];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=1e-35) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=7e-98) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc04g049840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42788007-42797456 transcript_region:SL2.40ch04:42788007..42797456- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q5BKS6_XENTR); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00041452g0008.1 protein AED:0.28 eAED:0.30 QI:0|0.85|0.62|1|0.71|0.87|8|0|453; (*GB) gi|359479031|ref|XP_002284749.2| (e_value=9e-104) PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera];; (*SWP) sp|Q9SK03|RAP27_ARATH (e_value=1e-76) Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2;; (*TAIR) AT2G28550.2 (e_value=3e-78) | Symbols: RAP2.7, TOE1 | related to AP2.7 | chr2:12226444-12228251 REVERSE LENGTH=381;; (*ITAG) Solyc04g049800.2.1 (e_value=1e-150) genomic_reference:SL2.40ch04 gene_region:42714973-42717503 transcript_region:SL2.40ch04:42714973..42717503+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g79700 (AHRD V1 *--- AP2L3_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00009983g0004.1 protein AED:0.64 eAED:0.64 QI:60|0.5|0.33|0.66|0.5|0.33|3|0|62 NbS00009983g0008.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|384; (*GB) gi|108864705|gb|ABG22608.1| (e_value=0.0) Heat shock cognate 70 kDa protein, putative, expressed [Oryza sativa Japonica Group];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00024595g0005.1 protein AED:0.16 eAED:0.16 QI:456|0.5|0.52|0.88|0.87|0.82|17|526|574; (*GB) gi|225442347|ref|XP_002281123.1| (e_value=0.0) PREDICTED: NADP-specific glutamate dehydrogenase-like [Vitis vinifera];; (*SWP) sp|P28724|DHE4_GIAIN (e_value=2e-87) NADP-specific glutamate dehydrogenase OS=Giardia intestinalis PE=2 SV=1;; (*TAIR) AT1G51720.1 (e_value=0.0) | Symbols: | Amino acid dehydrogenase family protein | chr1:19181741-19186297 FORWARD LENGTH=637;; (*ITAG) Solyc01g068210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69699190-69709191 transcript_region:SL2.40ch01:69699190..69709191+ go_terms:GO:0008152,GO:0055114 functional_description:"Glutamate dehydrogenase (AHRD V1 ***- A2TQI4_9FLAO); contains Interpro domain(s) IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase "; GO:0008152,GO:0055114 NbS00024595g0011.1 protein AED:0.18 eAED:0.18 QI:379|1|1|1|0.8|0.66|6|1212|248; (*GB) gi|224072835|ref|XP_002303904.1| (e_value=3e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FPS3|UBP24_ARATH (e_value=1e-16) Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1;; (*TAIR) AT4G30890.3 (e_value=1e-17) | Symbols: UBP24 | ubiquitin-specific protease 24 | chr4:15036383-15038825 REVERSE LENGTH=551;; (*ITAG) Solyc01g068240.2.1 (e_value=1e-111) genomic_reference:SL2.40ch01 gene_region:69744121-69754161 transcript_region:SL2.40ch01:69744121..69754161+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** D7MBK9_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00002506g0102.1 protein AED:0.01 eAED:0.01 QI:895|1|1|1|0.71|0.62|8|670|659 NbS00002506g0105.1 protein AED:0.08 eAED:0.08 QI:36|-1|0|1|-1|1|1|0|409 NbS00034824g0008.1 protein AED:0.04 eAED:0.04 QI:199|0.4|0.66|1|0.6|0.66|6|264|316; (*GB) gi|225427282|ref|XP_002278917.1| (e_value=4e-119) PREDICTED: expansin-like B1 [Vitis vinifera];; (*SWP) sp|Q850K7|EXLB1_ORYSJ (e_value=1e-86) Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=2e-46) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077330.2.1 (e_value=6e-151) genomic_reference:SL2.40ch08 gene_region:58389533-58391046 transcript_region:SL2.40ch08:58389533..58391046- go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A2ICD7_CUNLA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00034824g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.93|1|0.92|0.93|15|0|610; (*GB) gi|225427288|ref|XP_002281722.1| (e_value=0.0) PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=0.0) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=0.0) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc08g077360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58405875-58412355 transcript_region:SL2.40ch08:58405875..58412355- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00034824g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.8|0.66|1|0.8|0.66|6|786|279; (*GB) gi|363807864|ref|NP_001242699.1| (e_value=7e-134) uncharacterized protein LOC100802762 [Glycine max];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=3e-18) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT2G38740.1 (e_value=1e-119) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:16194639-16195995 REVERSE LENGTH=244;; (*ITAG) Solyc08g077350.2.1 (e_value=9e-162) genomic_reference:SL2.40ch08 gene_region:58402411-58405715 transcript_region:SL2.40ch08:58402411..58405715+ go_terms:GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 (AHRD V1 **-* B2IYD2_NOSP7); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787 NbS00010311g0003.1 protein AED:0.28 eAED:0.28 QI:86|0.85|1|1|0.71|0.75|8|348|278; (*GB) gi|225462956|ref|XP_002270140.1| (e_value=9e-141) PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9C8L4|GLO2O_ARATH (e_value=3e-135) Hydroxyacylglutathione hydrolase 3, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3;; (*TAIR) AT1G53580.1 (e_value=2e-136) | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 | chr1:19991542-19993250 REVERSE LENGTH=294;; (*ITAG) Solyc12g011430.1.1 (e_value=2e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4254435-4257376 transcript_region:SL2.40ch12:4254435..4257376+ go_terms:GO:0004416,GO:0047951 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** D9J0E0_9CARY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0004416,GO:0047951 NbS00058880g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|255588318|ref|XP_002534567.1| (e_value=7e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54120.1 (e_value=3e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20207078-20207452 FORWARD LENGTH=124;; (*ITAG) Solyc06g062930.1.1 (e_value=4e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36112577-36112957 transcript_region:SL2.40ch06:36112577..36112957- functional_description:"Unknown Protein (AHRD V1)"; NbS00058880g0009.1 protein AED:0.03 eAED:0.03 QI:213|1|1|1|0.25|0.6|5|173|463; (*GB) gi|350537699|ref|NP_001234561.1| (e_value=0.0) auxin-regulated dual specificity cytosolic kinase [Solanum lycopersicum];; (*SWP) sp|Q9CAH1|Y1725_ARATH (e_value=7e-165) Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1;; (*TAIR) AT2G05940.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc06g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36106783-36108977 transcript_region:SL2.40ch06:36106783..36108977+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0005515,GO:0004674 NbS00058880g0011.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|1|0|0|2|440|135 NbS00053864g0001.1 protein AED:0.29 eAED:0.29 QI:27|1|1|1|1|1|8|606|428; (*GB) gi|224101353|ref|XP_002312246.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P49961|ENTP1_HUMAN (e_value=8e-42) Ectonucleoside triphosphate diphosphohydrolase 1 OS=Homo sapiens GN=ENTPD1 PE=1 SV=1;; (*TAIR) AT2G02970.1 (e_value=0.0) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr2:865395-868007 REVERSE LENGTH=555;; (*ITAG) Solyc05g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2166006-2171115 transcript_region:SL2.40ch05:2166006..2171115- go_terms:GO:0017111,GO:0017110 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 **-- Q6DFS1_XENTR); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0017111,GO:0017110 NbS00010501g0011.1 protein AED:0.03 eAED:0.05 QI:0|1|0|1|1|1|2|0|277; (*GB) gi|147818973|emb|CAN67117.1| (e_value=2e-26) hypothetical protein VITISV_026466 [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=5e-19) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=4e-20) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc06g064580.1.1 (e_value=2e-93) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36634476-36636833 transcript_region:SL2.40ch06:36634476..36636833+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00010501g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|0.66|1|1|3|0|150; (*GB) gi|297735856|emb|CBI18610.3| (e_value=4e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=7e-28) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=5e-29) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc06g064590.1.1 (e_value=5e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36640366-36644660 transcript_region:SL2.40ch06:36640366..36644660+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *--- Q401N5_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00047661g0005.1 protein AED:0.06 eAED:0.06 QI:50|1|1|1|1|1|2|96|499; (*GB) gi|225463247|ref|XP_002270541.1| (e_value=0.0) PREDICTED: cytochrome P450 76C4 [Vitis vinifera];; (*SWP) sp|O64635|C76C4_ARATH (e_value=8e-154) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=6e-155) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc06g066270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37969956-37971532 transcript_region:SL2.40ch06:37969956..37971532- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00047661g0001.1 protein AED:0.26 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|195542260|gb|AAR87850.2| (e_value=4e-32) fertilization-related kinase 1 [Solanum chacoense];; (*TAIR) AT3G50310.1 (e_value=9e-19) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc06g065790.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022068g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|1|1|4|0|410; (*GB) gi|225434812|ref|XP_002282608.1| (e_value=6e-130) PREDICTED: probable protein phosphatase 2C 24 [Vitis vinifera];; (*SWP) sp|Q9ZW21|P2C24_ARATH (e_value=4e-115) Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1;; (*TAIR) AT2G29380.1 (e_value=3e-116) | Symbols: HAI3 | highly ABA-induced PP2C gene 3 | chr2:12608855-12610124 FORWARD LENGTH=362;; (*ITAG) Solyc06g076400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43862169-43864112 transcript_region:SL2.40ch06:43862169..43864112+ go_terms:GO:0004722,GO:0008022 functional_description:"Protein phosphatase 2C (AHRD V1 **** Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00042589g0004.1 protein AED:0.35 eAED:0.36 QI:0|0.83|0.71|1|0.83|0.71|7|0|300; (*GB) gi|225447643|ref|XP_002274772.1| (e_value=6e-88) PREDICTED: vesicle-associated protein 4-2-like [Vitis vinifera];; (*SWP) sp|Q8VYN2|VAP42_ARATH (e_value=8e-85) Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1;; (*TAIR) AT4G21450.1 (e_value=6e-86) | Symbols: | PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295;; (*ITAG) Solyc07g054740.2.1 (e_value=8e-123) genomic_reference:SL2.40ch07 gene_region:60285913-60291302 transcript_region:SL2.40ch07:60285913..60291302- go_terms:GO:0005198 functional_description:"Membrane associated protein-like protein (AHRD V1 ***- Q8LAZ8_ARATH); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00021418g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|2346982|dbj|BAA21925.1| (e_value=2e-60) ZPT2-8 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=6e-28) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=2e-29) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc05g054650.1.1 (e_value=3e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00040126g0007.1 protein AED:0.08 eAED:0.08 QI:224|1|1|1|1|1|2|129|470; (*GB) gi|225448530|ref|XP_002273407.1| (e_value=2e-177) PREDICTED: ankyrin-3-like [Vitis vinifera];; (*SWP) sp|Q505D1|ANR28_MOUSE (e_value=2e-30) Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A OS=Mus musculus GN=Ankrd28 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=2e-21) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc03g095860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50985681-50987832 transcript_region:SL2.40ch03:50985681..50987832- go_terms:GO:0005198 functional_description:"Ankyrin repeat domain-containing protein 50 (AHRD V1 ***- B6SWZ3_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005198 NbS00040126g0001.1 protein AED:0.05 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|651; (*GB) gi|359486383|ref|XP_002273437.2| (e_value=0.0) PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Vitis vinifera];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=2e-112) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=1e-165) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc03g095850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:50983692-50985473 transcript_region:SL2.40ch03:50983692..50985473- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00016474g0001.1 protein AED:0.45 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|109; (*GB) gi|297826713|ref|XP_002881239.1| (e_value=6e-27) B5 #4 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O48845|CYB52_ARATH (e_value=3e-28) Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1;; (*TAIR) AT2G32720.1 (e_value=2e-29) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc03g082600.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:46071440-46075109 transcript_region:SL2.40ch03:46071440..46075109- go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** A5Z1Y7_MALDO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00020706g0022.1 protein AED:0.14 eAED:0.15 QI:44|0.78|0.66|1|0.78|0.66|15|0|2155; (*GB) gi|359489621|ref|XP_002274479.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263628 [Vitis vinifera];; (*SWP) sp|Q54U49|MED12_DICDI (e_value=5e-16) Putative mediator of RNA polymerase II transcription subunit 12 OS=Dictyostelium discoideum GN=med12 PE=3 SV=2;; (*TAIR) AT4G00450.1 (e_value=0.0) | Symbols: CRP, CCT | RNA polymerase II transcription mediators | chr4:202425-210666 FORWARD LENGTH=2253;; (*ITAG) Solyc01g094620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77794871-77810348 transcript_region:SL2.40ch01:77794871..77810348- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 12 (AHRD V1 *--- B2G3S6_ZYGRO); contains Interpro domain(s) IPR019035 Mediator complex, subunit Med12 "; GO:0016592 NbS00020706g0007.1 protein AED:0.10 eAED:0.11 QI:0|1|0.66|1|0|0|3|548|690; (*GB) gi|147834193|emb|CAN75306.1| (e_value=0.0) hypothetical protein VITISV_040403 [Vitis vinifera];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=1e-112) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=8e-114) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc01g094600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77786297-77788190 transcript_region:SL2.40ch01:77786297..77788190+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00020706g0021.1 protein AED:0.13 eAED:0.13 QI:0|1|0.87|1|1|0.87|8|0|470; (*GB) gi|255541596|ref|XP_002511862.1| (e_value=0.0) Rop guanine nucleotide exchange factor, putative [Ricinus communis];; (*SWP) sp|Q9LQ89|ROGF2_ARATH (e_value=0.0) Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2;; (*TAIR) AT4G00460.2 (e_value=0.0) | Symbols: ATROPGEF3, ROPGEF3 | RHO guanyl-nucleotide exchange factor 3 | chr4:211146-213094 REVERSE LENGTH=473;; (*ITAG) Solyc01g094610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77792278-77794407 transcript_region:SL2.40ch01:77792278..77794407+ go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 2 (AHRD V1 **-* ROGF2_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00020706g0008.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|306; (*GB) gi|193527448|gb|ACF19789.1| (e_value=4e-17) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=1e-51) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00020706g0020.1 protein AED:0.30 eAED:0.33 QI:33|0.66|0.25|1|0.66|0.5|4|523|149; (*GB) gi|359495583|ref|XP_002266294.2| (e_value=6e-26) PREDICTED: uncharacterized protein LOC100247267 [Vitis vinifera];; (*ITAG) Solyc01g094630.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:77834979-77835608 transcript_region:SL2.40ch01:77834979..77835608+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039256g0006.1 protein AED:0.25 eAED:0.25 QI:247|0.8|0.83|1|0.8|0.83|6|396|198; (*GB) gi|356516916|ref|XP_003527138.1| (e_value=7e-92) PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Glycine max];; (*SWP) sp|Q9FFB3|VP241_ARATH (e_value=3e-85) Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1;; (*TAIR) AT5G22950.1 (e_value=3e-86) | Symbols: VPS24.1 | SNF7 family protein | chr5:7681380-7682720 FORWARD LENGTH=229;; (*ITAG) Solyc11g066260.1.1 (e_value=1e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49059469-49065365 transcript_region:SL2.40ch11:49059469..49065365- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 3 (AHRD V1 ***- B6SM72_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00049536g0005.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0|1|0.5|0.33|3|0|194; (*GB) gi|255577930|ref|XP_002529837.1| (e_value=1e-11) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g083800.2.1 (e_value=8e-38) genomic_reference:SL2.40ch06 gene_region:45404734-45406644 transcript_region:SL2.40ch06:45404734..45406644- functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00049536g0006.1 protein AED:0.40 eAED:0.40 QI:0|1|0.33|1|1|1|3|0|167; (*GB) gi|226493243|ref|NP_001149896.1| (e_value=7e-78) pleckstrin homology domain containing, family A [Zea mays];; (*SWP) sp|Q80W71|PKHA8_MOUSE (e_value=4e-15) Pleckstrin homology domain-containing family A member 8 OS=Mus musculus GN=Plekha8 PE=2 SV=2;; (*TAIR) AT2G33470.2 (e_value=6e-69) | Symbols: GLTP1 | glycolipid transfer protein 1 | chr2:14176599-14177950 REVERSE LENGTH=202;; (*ITAG) Solyc06g083810.2.1 (e_value=4e-91) genomic_reference:SL2.40ch06 gene_region:45406955-45411773 transcript_region:SL2.40ch06:45406955..45411773- go_terms:GO:0051861,GO:0017089 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-* C1C1L0_9MAXI); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0051861,GO:0017089 NbS00011169g0001.1 protein AED:0.53 eAED:0.75 QI:204|0|0|1|0|0|2|0|65 NbS00024699g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|255565639|ref|XP_002523809.1| (e_value=2e-65) Ferredoxin-3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|P27788|FER3_MAIZE (e_value=4e-49) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=3e-49) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=2e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00024699g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|329; (*GB) gi|255545450|ref|XP_002513785.1| (e_value=4e-96) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=1e-34) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT1G60360.1 (e_value=9e-67) | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731 REVERSE LENGTH=327;; (*ITAG) Solyc11g012950.1.1 (e_value=3e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5796734-5797823 transcript_region:SL2.40ch11:5796734..5797823+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00029160g0007.1 protein AED:0.16 eAED:0.16 QI:66|1|0.89|1|0.61|0.73|19|492|665; (*GB) gi|359477093|ref|XP_003631936.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.3 (e_value=0.0) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029;; (*ITAG) Solyc01g057900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00029160g0008.1 protein AED:0.20 eAED:0.21 QI:76|0.66|0.6|0.9|0.55|0.5|10|0|1085; (*GB) gi|359477631|ref|XP_002274485.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera];; (*SWP) sp|Q8H136|RH14_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2;; (*TAIR) AT3G01540.4 (e_value=0.0) | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619;; (*ITAG) Solyc01g057760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56514460-56523028 transcript_region:SL2.40ch01:56514460..56523028+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00001103g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|225453090|ref|XP_002271387.1| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera];; (*TAIR) AT2G01300.1 (e_value=1e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc02g091250.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47188821-47189213 transcript_region:SL2.40ch02:47188821..47189213- functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00033502g0005.1 protein AED:0.12 eAED:0.12 QI:185|1|1|1|0.25|0.4|5|154|238; (*GB) gi|359477469|ref|XP_002279368.2| (e_value=3e-117) PREDICTED: BI1-like protein-like [Vitis vinifera];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=4e-102) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT4G15470.1 (e_value=3e-103) | Symbols: | Bax inhibitor-1 family protein | chr4:8843661-8845505 FORWARD LENGTH=256;; (*ITAG) Solyc01g080330.2.1 (e_value=8e-138) genomic_reference:SL2.40ch01 gene_region:72068095-72070591 transcript_region:SL2.40ch01:72068095..72070591+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TGH7_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00033502g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|439; (*GB) gi|225432484|ref|XP_002279111.1| (e_value=2e-101) PREDICTED: uncharacterized protein LOC100244278 [Vitis vinifera];; (*SWP) sp|A2BIJ3|BSDC1_DANRE (e_value=4e-19) BSD domain-containing protein 1 OS=Danio rerio GN=bsdc1 PE=1 SV=1;; (*TAIR) AT4G13110.1 (e_value=5e-60) | Symbols: | BSD domain-containing protein | chr4:7641507-7642457 FORWARD LENGTH=316;; (*ITAG) Solyc01g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72070935-72072591 transcript_region:SL2.40ch01:72070935..72072591- functional_description:"BSD domain containing 1 (AHRD V1 *-*- A9JT15_DANRE); contains Interpro domain(s) IPR005607 BSD "; NbS00050006g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|168; (*GB) gi|225439505|ref|XP_002271217.1| (e_value=3e-90) PREDICTED: UPF0098 protein MTH_273 isoform 1 [Vitis vinifera];; (*SWP) sp|O26373|Y273_METTH (e_value=6e-27) UPF0098 protein MTH_273 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_273 PE=3 SV=1;; (*TAIR) AT5G01300.1 (e_value=1e-77) | Symbols: | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:121643-122448 REVERSE LENGTH=162;; (*ITAG) Solyc09g005060.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:39518-40115 transcript_region:SL2.40ch09:39518..40115- go_terms:GO:0008429 functional_description:"Phosphatidylethanolamine-binding protein PEBP (AHRD V1 **-* C4K241_RICPU); contains Interpro domain(s) IPR005247 YbhB and YbcL "; GO:0008429 NbC26309559g0001.1 protein AED:0.13 eAED:0.13 QI:32|0|0|0.5|0|0|2|0|118; (*GB) gi|359474717|ref|XP_002267916.2| (e_value=8e-16) PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L7G3|CRK7_ARATH (e_value=3e-11) Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1;; (*TAIR) AT4G23150.1 (e_value=3e-12) | Symbols: CRK7 | cysteine-rich RLK (RECEPTOR-like protein kinase) 7 | chr4:12125731-12128301 FORWARD LENGTH=659;; (*ITAG) Solyc03g031550.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:8328618-8329070 transcript_region:SL2.40ch03:8328618..8329070- functional_description:"Cysteine-rich receptor-like protein kinase (AHRD V1 --*- C6ZRS1_SOYBN); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbC24428828g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0|2|119|71; (*GB) gi|2114048|dbj|BAA20075.1| (e_value=6e-42) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q8LAA6|PIP15_ARATH (e_value=1e-40) Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2;; (*TAIR) AT4G23400.1 (e_value=8e-42) | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic protein 1;5 | chr4:12220792-12222155 FORWARD LENGTH=287;; (*ITAG) Solyc08g081190.2.1 (e_value=1e-41) genomic_reference:SL2.40ch08 gene_region:61427665-61431015 transcript_region:SL2.40ch08:61427665..61431015+ go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- O24662_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00013941g0004.1 protein AED:0.08 eAED:0.08 QI:304|1|1|1|0.77|0.8|10|458|429; (*GB) gi|225462533|ref|XP_002265606.1| (e_value=0.0) PREDICTED: ethanolamine-phosphate cytidylyltransferase [Vitis vinifera];; (*SWP) sp|Q55BZ4|PCY2_DICDI (e_value=4e-119) Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1;; (*TAIR) AT2G38670.1 (e_value=0.0) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc07g009490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4599567-4605999 transcript_region:SL2.40ch07:4599567..4605999+ go_terms:GO:0004306 functional_description:"Ethanolamine-phosphate cytidylyltransferase (AHRD V1 **** C5DB57_VITVI); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306 NbS00036076g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0|0.33|3|451|83 NbS00036076g0012.1 protein AED:0.03 eAED:0.07 QI:649|0.33|0.25|1|0|0.25|4|0|192; (*GB) gi|226531328|ref|NP_001149177.1| (e_value=2e-76) ADP-ribosylation factor [Zea mays];; (*SWP) sp|Q9ZPX1|ARF5_ARATH (e_value=1e-66) Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1;; (*TAIR) AT2G18390.1 (e_value=9e-68) | Symbols: TTN5, HAL, ARL2, ATARLC1 | ADP-ribosylation factor family protein | chr2:7988335-7989374 FORWARD LENGTH=185;; (*ITAG) Solyc07g014650.2.1 (e_value=1e-76) genomic_reference:SL2.40ch07 gene_region:5030533-5038543 transcript_region:SL2.40ch07:5030533..5038543- go_terms:GO:0005095 functional_description:"ADP-ribosylation factor (AHRD V1 ***- B6TBI1_MAIZE); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005095 NbS00036076g0011.1 protein AED:0.11 eAED:0.11 QI:242|0.91|0.92|1|0.83|0.84|13|412|908; (*GB) gi|255583860|ref|XP_002532681.1| (e_value=0.0) Epsin-2, putative [Ricinus communis];; (*SWP) sp|Q67YI9|EPN2_ARATH (e_value=6e-166) Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1;; (*TAIR) AT2G43160.1 (e_value=4e-167) | Symbols: | ENTH/VHS family protein | chr2:17948884-17953267 FORWARD LENGTH=895;; (*ITAG) Solyc09g098490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67561440-67568779 transcript_region:SL2.40ch09:67561440..67568779+ go_terms:GO:0005488 functional_description:"Epsin 2 (AHRD V1 *-*- Q5NCM7_MOUSE); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00036076g0007.1 protein AED:0.41 eAED:0.41 QI:28|1|0.66|1|0.5|0.66|3|0|65 NbS00012428g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.4|0.8|0.5|0.8|5|0|244; (*GB) gi|225464942|ref|XP_002275521.1| (e_value=6e-80) PREDICTED: probable calcium-binding protein CML48 [Vitis vinifera];; (*SWP) sp|Q9ZQH1|CML48_ARATH (e_value=2e-62) Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2;; (*TAIR) AT2G27480.1 (e_value=2e-63) | Symbols: | Calcium-binding EF-hand family protein | chr2:11746811-11747885 FORWARD LENGTH=228;; (*ITAG) Solyc11g068460.1.1 (e_value=5e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50264264-50267585 transcript_region:SL2.40ch11:50264264..50267585- go_terms:GO:0005509 functional_description:"Calpain-2 catalytic subunit (AHRD V1 *--- CAN2_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00012428g0002.1 protein AED:0.18 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|99; (*GB) gi|225434383|ref|XP_002270028.1| (e_value=4e-29) PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Vitis vinifera];; (*SWP) sp|O22929|BL1S1_ARATH (e_value=2e-19) Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1;; (*TAIR) AT2G30330.1 (e_value=1e-20) | Symbols: BLOS1 | GCN5L1 family protein | chr2:12929045-12929688 REVERSE LENGTH=152;; (*ITAG) Solyc11g068450.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50260524-50262870 transcript_region:SL2.40ch11:50260524..50262870+ functional_description:"Biogenesis of lysosome-related organelles complex-1 subunit 1 (AHRD V1 ***- C3KJU5_ANOFI); contains Interpro domain(s) IPR009395 GCN5-like 1 "; NbS00012428g0009.1 protein AED:0.33 eAED:0.40 QI:85|0.5|0.2|1|0.25|0.4|5|0|401; (*GB) gi|363806788|ref|NP_001242282.1| (e_value=0.0) uncharacterized protein LOC100786020 precursor [Glycine max];; (*SWP) sp|Q9ZQG9|E1314_ARATH (e_value=9e-169) Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2;; (*TAIR) AT2G27500.1 (e_value=7e-170) | Symbols: | Glycosyl hydrolase superfamily protein | chr2:11752364-11753844 REVERSE LENGTH=392;; (*ITAG) Solyc11g068440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50253546-50256836 transcript_region:SL2.40ch11:50253546..50256836+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00041427g0005.1 protein AED:0.05 eAED:0.05 QI:96|1|1|1|0|1|2|296|110; (*GB) gi|387911068|emb|CCG06563.1| (e_value=4e-22) TIP protein [Nicotiana tabacum];; (*SWP) sp|P37219|ASR2_SOLLC (e_value=2e-12) Abscisic stress-ripening protein 2 OS=Solanum lycopersicum GN=ASR2 PE=4 SV=1;; (*ITAG) Solyc04g071600.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:56163806-56165420 transcript_region:SL2.40ch04:56163806..56165420+ go_terms:GO:0006950 functional_description:"Abscisic stress ripening (Fragment) (AHRD V1 *--- D1MEA2_MUSAC); contains Interpro domain(s) IPR003496 ABA/WDS induced protein "; GO:0006950 NbS00056712g0001.1 protein AED:0.26 eAED:0.54 QI:0|0|0|1|1|1|2|0|137; (*GB) gi|380706600|gb|AFD97530.1| (e_value=4e-25) BAP1 [Vitis vinifera];; (*ITAG) Solyc01g091590.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:76943808-76944592 transcript_region:SL2.40ch01:76943808..76944592+ go_terms:GO:0005515,GO:0005543 functional_description:"SRC2 protein (AHRD V1 ***- A7XAJ8_9CONI); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; GO:0005515,GO:0005543 NbS00016566g0007.1 protein AED:0.00 eAED:0.00 QI:172|1|1|1|0.75|0.6|5|422|316; (*GB) gi|359480528|ref|XP_002270448.2| (e_value=9e-52) PREDICTED: transcription factor bHLH25-like [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=9e-44) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=7e-45) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091810.1.1 (e_value=4e-114) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:47604420-47608160 transcript_region:SL2.40ch02:47604420..47608160+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00043771g0003.1 protein AED:0.13 eAED:0.13 QI:311|1|0.66|1|0.5|0.33|3|0|426; (*GB) gi|255587500|ref|XP_002534293.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=4e-68) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G68130.1 (e_value=1e-137) | Symbols: AtIDD14, IDD14 | indeterminate(ID)-domain 14 | chr1:25532484-25534317 FORWARD LENGTH=419;; (*ITAG) Solyc03g098070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53872471-53874569 transcript_region:SL2.40ch03:53872471..53874569- go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 *--* D9ZIU3_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00007702g0001.1 protein AED:0.22 eAED:0.33 QI:0|0|0|1|1|1|3|0|405; (*GB) gi|225434447|ref|XP_002277764.1| (e_value=3e-126) PREDICTED: cation/H(+) antiporter 24 [Vitis vinifera];; (*SWP) sp|Q1HDT2|CHX24_ARATH (e_value=2e-75) Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2;; (*TAIR) AT5G37060.1 (e_value=2e-76) | Symbols: ATCHX24, CHX24 | cation/H+ exchanger 24 | chr5:14642741-14645414 REVERSE LENGTH=859;; (*ITAG) Solyc06g009240.2.1 (e_value=7e-54) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00007702g0004.1 protein AED:0.38 eAED:0.45 QI:0|0|0|1|1|1|3|0|115 NbS00007702g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|359478542|ref|XP_003632130.1| (e_value=4e-98) PREDICTED: mitoferrin-like [Vitis vinifera];; (*SWP) sp|Q55DY8|MFRN_DICDI (e_value=4e-44) Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1;; (*TAIR) AT2G30160.1 (e_value=8e-91) | Symbols: | Mitochondrial substrate carrier family protein | chr2:12878016-12879377 FORWARD LENGTH=331;; (*ITAG) Solyc06g082290.2.1 (e_value=9e-103) genomic_reference:SL2.40ch06 gene_region:44454789-44458090 transcript_region:SL2.40ch06:44454789..44458090- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- O82049_RIBNI); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00007702g0002.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.5|1|1|2|0|100; (*GB) gi|356500904|ref|XP_003519270.1| (e_value=1e-28) PREDICTED: mitoferrin-like [Glycine max];; (*TAIR) AT2G30160.1 (e_value=3e-29) | Symbols: | Mitochondrial substrate carrier family protein | chr2:12878016-12879377 FORWARD LENGTH=331;; (*ITAG) Solyc06g082290.2.1 (e_value=4e-33) genomic_reference:SL2.40ch06 gene_region:44454789-44458090 transcript_region:SL2.40ch06:44454789..44458090- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- O82049_RIBNI); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00007702g0109.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|1106 NbS00011797g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.77|1|0.75|0.66|9|289|372; (*GB) gi|225461965|ref|XP_002270559.1| (e_value=4e-178) PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Vitis vinifera];; (*SWP) sp|Q54SN4|RPAC1_DICDI (e_value=3e-80) DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1;; (*TAIR) AT1G60620.1 (e_value=7e-162) | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385;; (*ITAG) Solyc12g015780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5775862-5780527 transcript_region:SL2.40ch12:5775862..5780527- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit D (AHRD V1 ***- A8B9C8_GIALA); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type "; GO:0006350 NbS00011797g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.71|0.85|1|1|7|15|385; (*GB) gi|15241097|ref|NP_200406.1| (e_value=0.0) Nucleotide/sugar transporter family protein [Arabidopsis thaliana];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=1e-32) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT5G55950.1 (e_value=0.0) | Symbols: | Nucleotide/sugar transporter family protein | chr5:22658411-22660253 REVERSE LENGTH=398;; (*ITAG) Solyc12g015850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5829717-5832172 transcript_region:SL2.40ch12:5829717..5832172+ functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00011797g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|611; (*GB) gi|224061256|ref|XP_002300393.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H330|TM245_HUMAN (e_value=3e-14) Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2;; (*TAIR) AT5G55960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc12g015810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5807186-5809127 transcript_region:SL2.40ch12:5807186..5809127- functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH)"; NbS00020875g0029.1 protein AED:0.03 eAED:0.09 QI:0|0|0|1|1|1|2|0|316; (*GB) gi|255543240|ref|XP_002512683.1| (e_value=3e-30) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9M644|LEP_ARATH (e_value=1e-26) Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1;; (*TAIR) AT5G13910.1 (e_value=9e-28) | Symbols: LEP | Integrase-type DNA-binding superfamily protein | chr5:4482450-4483085 REVERSE LENGTH=211;; (*ITAG) Solyc11g045680.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:40372028-40373244 transcript_region:SL2.40ch11:40372028..40373244- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6SU49_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00020875g0021.1 protein AED:0.13 eAED:0.13 QI:9|0.33|0.25|0.75|1|1|4|296|654; (*GB) gi|225425292|ref|XP_002272176.1| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera];; (*SWP) sp|Q9LYR6|PTR49_ARATH (e_value=0.0) Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1;; (*TAIR) AT5G13400.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:4296854-4299079 REVERSE LENGTH=624;; (*ITAG) Solyc00g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:5823068-5825816 transcript_region:SL2.40ch00:5823068..5825816+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LYR6_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00020875g0024.1 protein AED:0.13 eAED:0.14 QI:48|0.77|0.73|0.94|0.94|0.89|19|0|1003; (*GB) gi|27529848|dbj|BAC53939.1| (e_value=0.0) MCM protein-like protein [Nicotiana tabacum];; (*SWP) sp|P55861|MCM2_XENLA (e_value=0.0) DNA replication licensing factor mcm2 OS=Xenopus laevis GN=mcm2 PE=1 SV=2;; (*TAIR) AT1G44900.1 (e_value=0.0) | Symbols: MCM2, ATMCM2 | minichromosome maintenance (MCM2/3/5) family protein | chr1:16970291-16974457 FORWARD LENGTH=936;; (*ITAG) Solyc11g040120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28583677-28588706 transcript_region:SL2.40ch11:28583677..28588706+ go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q8JGR5_DANRE); contains Interpro domain(s) IPR008045 MCM protein 2 "; GO:0005515 NbS00020875g0028.1 protein AED:0.39 eAED:0.39 QI:171|0.75|0.6|0.8|0.75|0.6|5|0|85; (*GB) gi|224053583|ref|XP_002297884.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=1e-48) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2;; (*TAIR) AT3G61110.1 (e_value=8e-50) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86;; (*ITAG) Solyc01g008090.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:2223864-2226034 transcript_region:SL2.40ch01:2223864..2226034- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- Q3HVK9_SOLTU); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00020875g0032.1 protein AED:0.14 eAED:0.16 QI:0|0.66|0.25|1|0.66|0.75|4|0|1156; (*GB) gi|255543250|ref|XP_002512688.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G13390.1 (e_value=0.0) | Symbols: NEF1 | no exine formation 1 | chr5:4292809-4296572 FORWARD LENGTH=1123;; (*ITAG) Solyc00g006830.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:5827877-5838053 transcript_region:SL2.40ch00:5827877..5838053- functional_description:"No exine formation-1 (AHRD V1 **-- Q9LYR7_ARATH)"; NbS00020875g0026.1 protein AED:0.17 eAED:0.17 QI:377|1|0.75|1|0.66|0.5|4|0|305; (*GB) gi|11994160|dbj|BAB01189.1| (e_value=6e-78) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=7e-67) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=6e-68) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc03g097630.2.1 (e_value=3e-70) genomic_reference:SL2.40ch03 gene_region:53410692-53417468 transcript_region:SL2.40ch03:53410692..53417468+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00020875g0033.1 protein AED:0.24 eAED:0.28 QI:0|0|0.5|1|0|0|2|0|217; (*GB) gi|224053587|ref|XP_002297886.1| (e_value=8e-26) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9M644|LEP_ARATH (e_value=8e-25) Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1;; (*TAIR) AT5G13910.1 (e_value=6e-26) | Symbols: LEP | Integrase-type DNA-binding superfamily protein | chr5:4482450-4483085 REVERSE LENGTH=211;; (*ITAG) Solyc11g045680.1.1 (e_value=5e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:40372028-40373244 transcript_region:SL2.40ch11:40372028..40373244- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6SU49_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00043682g0001.1 protein AED:0.24 eAED:0.24 QI:567|1|1|1|0.28|0.5|8|393|185; (*GB) gi|255581285|ref|XP_002531454.1| (e_value=2e-103) phosphatidylethanolamine n-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q0WPT7|Y2104_ARATH (e_value=4e-99) Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1;; (*TAIR) AT2G41040.1 (e_value=3e-100) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17121499-17123064 FORWARD LENGTH=352;; (*ITAG) Solyc07g007300.2.1 (e_value=5e-123) genomic_reference:SL2.40ch07 gene_region:2023709-2027998 transcript_region:SL2.40ch07:2023709..2027998+ go_terms:GO:0008152 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-*- A1HNK4_9FIRM); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbC24582927g0001.1 protein AED:0.00 eAED:0.00 QI:1|-1|0|1|-1|1|1|353|27 NbS00000678g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|82400146|gb|ABB72812.1| (e_value=5e-61) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-62) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=5e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00000678g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|82400146|gb|ABB72812.1| (e_value=5e-61) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-62) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=5e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00000678g0009.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|156; (*GB) gi|388514209|gb|AFK45166.1| (e_value=1e-55) unknown [Lotus japonicus];; (*SWP) sp|Q1SU99|H2B3_MEDTR (e_value=5e-57) Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=1e-56) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00051930g0013.1 protein AED:0.20 eAED:0.24 QI:399|0|0.33|1|0|0|3|0|421; (*GB) gi|225433742|ref|XP_002267271.1| (e_value=9e-169) PREDICTED: uncharacterized protein LOC100263505 [Vitis vinifera];; (*TAIR) AT5G48040.1 (e_value=3e-152) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:19470461-19471729 FORWARD LENGTH=422;; (*ITAG) Solyc11g019970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9879980-9884297 transcript_region:SL2.40ch11:9879980..9884297- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00051930g0012.1 protein AED:0.44 eAED:0.53 QI:0|0|0|1|0|0.33|3|0|109 NbS00051930g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|297745690|emb|CBI40975.3| (e_value=5e-14) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G49475.1 (e_value=5e-13) | Symbols: | AP2/B3-like transcriptional factor family protein | chr1:18312983-18313748 FORWARD LENGTH=190;; (*ITAG) Solyc04g015500.2.1 (e_value=6e-30) genomic_reference:SL2.40ch04 gene_region:5717054-5718455 transcript_region:SL2.40ch04:5717054..5718455+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g18960 (AHRD V1 *-*- Y3896_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00011744g0007.1 protein AED:0.37 eAED:0.37 QI:190|0.75|0.6|1|0.5|0.8|5|0|253; (*GB) gi|225450599|ref|XP_002277956.1| (e_value=7e-96) PREDICTED: lon protease homolog, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P93648|LONM_MAIZE (e_value=2e-86) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=1e-80) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024300.1.1 (e_value=1e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13235261-13240790 transcript_region:SL2.40ch10:13235261..13240790+ go_terms:GO:0006508 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00011744g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|350536489|ref|NP_001234505.1| (e_value=2e-36) anaerobic basic leucine zipper protein [Solanum lycopersicum];; (*TAIR) AT3G62420.1 (e_value=4e-20) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc01g100460.2.1 (e_value=5e-39) genomic_reference:SL2.40ch01 gene_region:82243649-82244921 transcript_region:SL2.40ch01:82243649..82244921+ go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **** C0LQL1_9CARY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00013395g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.54|0.58|1|1|1|12|0|598; (*GB) gi|359489584|ref|XP_002264072.2| (e_value=0.0) PREDICTED: auxin response factor 18-like [Vitis vinifera];; (*SWP) sp|Q9C5W9|ARFR_ARATH (e_value=2e-141) Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1;; (*TAIR) AT3G61830.1 (e_value=2e-142) | Symbols: ARF18 | auxin response factor 18 | chr3:22888171-22891179 FORWARD LENGTH=602;; (*ITAG) Solyc01g096070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78941748-78946012 transcript_region:SL2.40ch01:78941748..78946012+ go_terms:GO:0003700,GO:0008022 functional_description:"Auxin response factor 9 (AHRD V1 **** D7R605_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0008022 NbS00053873g0006.1 protein AED:0.19 eAED:0.19 QI:557|0.8|0.66|1|0.6|0.66|6|173|417; (*GB) gi|359474169|ref|XP_003631410.1| (e_value=2e-176) PREDICTED: uncharacterized protein LOC100247984 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8R1R3|STAR7_MOUSE (e_value=1e-13) StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2;; (*TAIR) AT1G64720.1 (e_value=1e-152) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc03g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45738953-45742666 transcript_region:SL2.40ch03:45738953..45742666+ functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00053873g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|133; (*GB) gi|12003400|gb|AAG43557.1|AF211539_1 (e_value=2e-34) Avr9/Cf-9 rapidly elicited protein 65 [Nicotiana tabacum];; (*ITAG) Solyc03g081330.1.1 (e_value=5e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45743175-45743453 transcript_region:SL2.40ch03:45743175..45743453- functional_description:"Avr9/Cf-9 rapidly elicited protein 65 (AHRD V1 ***- Q9FQZ0_TOBAC)"; NbS00031811g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|33312438|gb|AAQ04061.1| (e_value=9e-110) 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum];; (*SWP) sp|Q9XH32|RISB_SPIOL (e_value=4e-76) 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT2G44050.1 (e_value=7e-75) | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase | chr2:18224304-18225917 FORWARD LENGTH=227;; (*ITAG) Solyc12g096590.1.1 (e_value=1e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63783509-63787350 transcript_region:SL2.40ch12:63783509..63787350- go_terms:GO:0009349 functional_description:"6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 ***- B2CM14_SOLCH); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase "; GO:0009349 NbS00035525g0018.1 protein AED:0.14 eAED:0.14 QI:400|0.85|0.87|1|0.57|0.62|8|294|116; (*GB) gi|255559070|ref|XP_002520557.1| (e_value=1e-71) Protein pob, putative [Ricinus communis];; (*SWP) sp|Q3ZCB8|TM111_BOVIN (e_value=1e-31) Transmembrane protein 111 OS=Bos taurus GN=TMEM111 PE=2 SV=3;; (*TAIR) AT4G12590.1 (e_value=3e-73) | Symbols: | Protein of unknown function DUF106, transmembrane | chr4:7451291-7452976 REVERSE LENGTH=246;; (*ITAG) Solyc05g054100.2.1 (e_value=1e-73) genomic_reference:SL2.40ch05 gene_region:63220642-63224589 transcript_region:SL2.40ch05:63220642..63224589- go_terms:GO:0005515 functional_description:"Transmembrane protein 111 (AHRD V1 **-- TM111_DANRE); contains Interpro domain(s) IPR008568 Protein of unknown function DUF850, transmembrane eukaryotic "; GO:0005515 NbS00035525g0015.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0|0.16|6|0|847; (*GB) gi|115381094|gb|ABI96211.1| (e_value=0.0) NBS-LRR resistance protein-like protein [Solanum sp. VFNT];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=4e-87) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=1e-44) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g043420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:55463046-55467606 transcript_region:SL2.40ch05:55463046..55467606- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00035525g0016.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0.5|2|0|162; (*GB) gi|209360979|gb|ACI43068.1| (e_value=3e-33) NBS-LRR root-knot nematode resistance protein [Capsicum annuum];; (*ITAG) Solyc05g047700.1.1 (e_value=5e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58330521-58335186 transcript_region:SL2.40ch05:58330521..58335186+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00035525g0019.1 protein AED:0.08 eAED:0.08 QI:240|1|1|1|0|0|2|180|99; (*GB) gi|297790905|ref|XP_002863337.1| (e_value=8e-30) hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q41916|CYT5_ARATH (e_value=6e-30) Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2;; (*TAIR) AT5G47550.1 (e_value=4e-31) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc05g054120.1.1 (e_value=4e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63232891-63233280 transcript_region:SL2.40ch05:63232891..63233280+ go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 *-*- Q9ARH0_DIACA); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869 NbS00035525g0014.1 protein AED:0.39 eAED:0.40 QI:0|0.75|0.6|0.8|0.75|0.8|5|0|210; (*GB) gi|89473698|gb|ABD72661.1| (e_value=3e-143) pollen tube RhoGDI2 [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=8e-89) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=6e-90) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc05g054110.2.1 (e_value=2e-129) genomic_reference:SL2.40ch05 gene_region:63227023-63231557 transcript_region:SL2.40ch05:63227023..63231557+ go_terms:GO:0005094 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 **** Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005094 NbS00018764g0012.1 protein AED:0.00 eAED:0.00 QI:183|1|1|1|1|1|3|216|130; (*GB) gi|359475237|ref|XP_002284907.2| (e_value=7e-53) PREDICTED: polyneuridine-aldehyde esterase-like [Vitis vinifera];; (*SWP) sp|Q0JG99|PIR7B_ORYSJ (e_value=3e-21) Esterase PIR7B OS=Oryza sativa subsp. japonica GN=PIR7B PE=2 SV=2;; (*TAIR) AT3G50440.1 (e_value=7e-21) | Symbols: ATMES10, MES10 | methyl esterase 10 | chr3:18717392-18718435 REVERSE LENGTH=288;; (*ITAG) Solyc01g108740.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:87713290-87714523 transcript_region:SL2.40ch01:87713290..87714523- go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LG04_ARALY)"; GO:0080031,GO:0080030 NbS00018764g0015.1 protein AED:0.22 eAED:0.22 QI:76|0.7|0.63|1|0.8|0.72|11|215|511; (*GB) gi|225428661|ref|XP_002284886.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262433 [Vitis vinifera];; (*TAIR) AT2G15860.2 (e_value=3e-174) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 110 Blast hits to 109 proteins in 51 species: Archae - 0; Bacteria - 4; Metazoa - 37; Fungi - 10; Plants - 37; Viruses - 3; Other Eukaryotes - 19 (source: NCBI BLink). | chr2:6905712-6909282 REVERSE LENGTH=524;; (*ITAG) Solyc01g108890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87788443-87793650 transcript_region:SL2.40ch01:87788443..87793650- functional_description:"Potential GTPase activation protein (AHRD V1 *-*- A8INH1_CHLRE)"; NbS00001707g0003.1 protein AED:0.71 eAED:0.71 QI:0|1|0|1|0|0.5|2|0|74 NbS00025752g0010.1 protein AED:0.27 eAED:0.27 QI:136|0.90|0.91|1|0.90|0.91|12|466|365; (*GB) gi|225428330|ref|XP_002283109.1| (e_value=0.0) PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera];; (*SWP) sp|Q949P3|Y2734_ARATH (e_value=0.0) Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1;; (*TAIR) AT4G35360.1 (e_value=0.0) | Symbols: | Uncharacterised conserved protein (UCP030210) | chr4:16812303-16814656 REVERSE LENGTH=367;; (*ITAG) Solyc10g074590.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57465951-57473739 transcript_region:SL2.40ch10:57465951..57473739- go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase 4 (AHRD V1 **** B6TFD8_MAIZE); contains Interpro domain(s) IPR016949 Uncharacterised conserved protein UCP030210 "; GO:0005515,GO:0004594 NbS00025752g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|224132456|ref|XP_002328279.1| (e_value=1e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35320.1 (e_value=3e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16806139-16806582 REVERSE LENGTH=147;; (*ITAG) Solyc01g112260.2.1 (e_value=2e-54) genomic_reference:SL2.40ch01 gene_region:90097982-90098946 transcript_region:SL2.40ch01:90097982..90098946- functional_description:"Unknown Protein (AHRD V1)"; NbS00028256g0005.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|147833687|emb|CAN73058.1| (e_value=1e-70) hypothetical protein VITISV_007599 [Vitis vinifera];; (*SWP) sp|P36945|RBSK_BACSU (e_value=1e-16) Ribokinase OS=Bacillus subtilis (strain 168) GN=rbsK PE=3 SV=2;; (*TAIR) AT1G17160.1 (e_value=1e-63) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:5867678-5869215 FORWARD LENGTH=379;; (*ITAG) Solyc07g062070.2.1 (e_value=3e-74) genomic_reference:SL2.40ch07 gene_region:62119223-62123240 transcript_region:SL2.40ch07:62119223..62123240+ go_terms:GO:0005515 functional_description:"Ribokinase (AHRD V1 ***- C5RCK9_WEIPA); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00028256g0006.1 protein AED:0.23 eAED:0.37 QI:0|0.33|0.42|1|0.66|0.42|7|358|352; (*GB) gi|156105712|gb|ABU49227.1| (e_value=2e-55) chloroplast methionine sulfoxide reductase B1 precursor [Nicotiana tabacum];; (*SWP) sp|Q9C8M2|MSRB1_ARATH (e_value=8e-41) Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1;; (*TAIR) AT1G53670.1 (e_value=6e-42) | Symbols: MSRB1, ATMSRB1 | methionine sulfoxide reductase B 1 | chr1:20036687-20038074 FORWARD LENGTH=202;; (*ITAG) Solyc07g062060.2.1 (e_value=3e-46) genomic_reference:SL2.40ch07 gene_region:62114496-62117377 transcript_region:SL2.40ch07:62114496..62117377- go_terms:GO:0055114 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 ***- B6T2N3_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0055114 NbS00008121g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|225430692|ref|XP_002265924.1| (e_value=4e-45) PREDICTED: uncharacterized protein LOC100263337 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=1e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc03g033860.1.1 (e_value=2e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9745193-9745957 transcript_region:SL2.40ch03:9745193..9745957- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00008121g0007.1 protein AED:0.33 eAED:0.34 QI:0|1|0.71|1|0.5|0.71|7|0|312; (*GB) gi|224112613|ref|XP_002316241.1| (e_value=1e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|P59277|SYP81_ARATH (e_value=4e-137) Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2;; (*TAIR) AT1G51740.1 (e_value=3e-138) | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin of plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310;; (*ITAG) Solyc04g071730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56289457-56294725 transcript_region:SL2.40ch04:56289457..56294725+ go_terms:GO:0005484 functional_description:"Syntaxin 81 (AHRD V1 ***- B6TDT7_MAIZE); contains Interpro domain(s) IPR019529 SNARE-complex protein Syntaxin-18 N-terminal "; GO:0005484 NbS00023175g0004.1 protein AED:0.08 eAED:0.08 QI:171|1|0.66|1|1|1|3|0|138; (*GB) gi|225463049|ref|XP_002268107.1| (e_value=6e-47) PREDICTED: uncharacterized methyltransferase At2g41040, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WPT7|Y2104_ARATH (e_value=7e-32) Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1;; (*TAIR) AT2G41040.1 (e_value=5e-33) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17121499-17123064 FORWARD LENGTH=352;; (*ITAG) Solyc07g007310.2.1 (e_value=1e-70) genomic_reference:SL2.40ch07 gene_region:2029424-2034866 transcript_region:SL2.40ch07:2029424..2034866+ go_terms:GO:0008152 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-*- B2GCN0_LACF3); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00030046g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|171 NbS00030046g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|1|0|0|4|0|467; (*GB) gi|559237|gb|AAA98492.1| (e_value=6e-28) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00030046g0009.1 protein AED:0.30 eAED:0.56 QI:0|0|0|1|0|0|2|0|417; (*GB) gi|559237|gb|AAA98492.1| (e_value=2e-34) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=9e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00060623g0001.1 protein AED:0.19 eAED:0.19 QI:99|0.8|0.83|1|0.8|0.66|6|504|338; (*GB) gi|225434839|ref|XP_002282638.1| (e_value=3e-144) PREDICTED: tropinone reductase homolog At1g07440 [Vitis vinifera];; (*SWP) sp|P50165|TRNH_DATST (e_value=6e-107) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT2G29260.1 (e_value=3e-142) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:12582523-12583954 FORWARD LENGTH=322;; (*ITAG) Solyc06g005720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:766800-773885 transcript_region:SL2.40ch06:766800..773885+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Tropinone-reductase-like39 (AHRD V1 **-- B2BXL7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0016020,GO:0008152,GO:0055114 NbS00021984g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0|1|0.5|0.33|3|0|177; (*GB) gi|37625033|gb|AAQ96340.1| (e_value=3e-48) protein kinase-like protein [Vitis aestivalis];; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=6e-42) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT5G02800.1 (e_value=2e-47) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc09g007170.2.1 (e_value=2e-49) genomic_reference:SL2.40ch09 gene_region:793123-799599 transcript_region:SL2.40ch09:793123..799599- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00038256g0002.1 protein AED:0.05 eAED:0.05 QI:66|0.91|0.92|1|0.83|0.76|13|123|449; (*GB) gi|225461927|ref|XP_002265837.1| (e_value=0.0) PREDICTED: NAD-dependent deacetylase sirtuin-6 [Vitis vinifera];; (*SWP) sp|Q9FE17|SIR1_ARATH (e_value=0.0) NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1;; (*TAIR) AT5G55760.1 (e_value=0.0) | Symbols: SRT1 | sirtuin 1 | chr5:22567282-22570716 FORWARD LENGTH=473;; (*ITAG) Solyc07g065550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64486252-64496779 transcript_region:SL2.40ch07:64486252..64496779+ go_terms:GO:0045449 functional_description:"NAD-dependent deacetylase (AHRD V1 *-*- B1QRD7_CLOBO); contains Interpro domain(s) IPR003000 NAD-dependent histone deacetylase, silent information regulator Sir2 "; GO:0045449 NbS00000922g0012.1 protein AED:0.00 eAED:0.00 QI:223|1|0.75|1|0.66|0.25|4|0|205; (*GB) gi|296086057|emb|CBI31498.3| (e_value=9e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=6e-19) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT3G52290.1 (e_value=2e-24) | Symbols: IQD3 | IQ-domain 3 | chr3:19394441-19396196 FORWARD LENGTH=430;; (*ITAG) Solyc04g050050.2.1 (e_value=1e-34) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00000922g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|0|0.5|2|0|275; (*GB) gi|225449126|ref|XP_002277282.1| (e_value=7e-88) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=4e-32) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=1e-55) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc04g050050.2.1 (e_value=2e-130) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00000922g0011.1 protein AED:0.34 eAED:0.35 QI:0|0.85|0.62|1|1|1|8|0|505; (*GB) gi|356572282|ref|XP_003554298.1| (e_value=5e-105) PREDICTED: uncharacterized protein LOC100810560 [Glycine max];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=3e-33) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=7e-77) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc05g055940.2.1 (e_value=5e-158) genomic_reference:SL2.40ch05 gene_region:64521576-64525231 transcript_region:SL2.40ch05:64521576..64525231+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00000922g0006.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|67 NbS00037185g0011.1 protein AED:0.20 eAED:0.21 QI:211|0.78|0.83|1|0.78|0.75|24|510|1892; (*GB) gi|359489732|ref|XP_002278370.2| (e_value=0.0) PREDICTED: protein KIAA0664 homolog [Vitis vinifera];; (*SWP) sp|O15818|K0664_DICDI (e_value=2e-27) Protein KIAA0664 homolog OS=Dictyostelium discoideum GN=cluA PE=1 SV=2;; (*TAIR) AT1G01320.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1797;; (*ITAG) Solyc01g095900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78800171-78813838 transcript_region:SL2.40ch01:78800171..78813838+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_ASPCL); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00037185g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|297745451|emb|CBI40531.3| (e_value=1e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G45360.1 (e_value=7e-20) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc01g095920.2.1 (e_value=4e-137) genomic_reference:SL2.40ch01 gene_region:78825307-78827149 transcript_region:SL2.40ch01:78825307..78827149- go_terms:GO:0008171 functional_description:"O-methyltransferase family 3 (AHRD V1 ***- B5ZT51_RHILW); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; GO:0008171 NbS00037185g0012.1 protein AED:0.38 eAED:0.38 QI:68|0.5|0.6|1|0.5|0.8|5|70|380; (*GB) gi|359489552|ref|XP_002278384.2| (e_value=7e-115) PREDICTED: uncharacterized protein LOC100258436 [Vitis vinifera];; (*TAIR) AT3G61750.1 (e_value=7e-111) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:22857897-22859254 REVERSE LENGTH=398;; (*ITAG) Solyc10g009480.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3583862-3585967 transcript_region:SL2.40ch10:3583862..3585967+ functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6TH76_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00056438g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.25|1|0|0|4|0|174; (*GB) gi|147857680|emb|CAN82881.1| (e_value=8e-41) hypothetical protein VITISV_008555 [Vitis vinifera];; (*SWP) sp|Q8VYG3|GUN16_ARATH (e_value=4e-33) Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=3e-34) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=8e-41) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00056438g0005.1 protein AED:0.04 eAED:0.08 QI:0|0|0|1|0|0|2|0|163; (*GB) gi|195542260|gb|AAR87850.2| (e_value=2e-63) fertilization-related kinase 1 [Solanum chacoense];; (*TAIR) AT2G32510.1 (e_value=3e-20) | Symbols: MAPKKK17 | mitogen-activated protein kinase kinase kinase 17 | chr2:13798821-13799939 REVERSE LENGTH=372;; (*ITAG) Solyc06g065660.1.1 (e_value=4e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00025801g0001.1 protein AED:0.13 eAED:0.13 QI:1371|0.91|0.84|1|0.41|0.38|13|304|300; (*GB) gi|350536529|ref|NP_001234763.1| (e_value=0.0) alkaline alpha-galactosidase seed imbibition protein [Solanum lycopersicum];; (*SWP) sp|Q84VX0|RFS1_ARATH (e_value=3e-148) Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1;; (*TAIR) AT1G55740.1 (e_value=3e-149) | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835507-20838707 REVERSE LENGTH=754;; (*ITAG) Solyc07g065980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64766853-64771778 transcript_region:SL2.40ch07:64766853..64771778+ go_terms:GO:0004553 functional_description:"Alkaline alpha galactosidase I (AHRD V1 **-- Q3Y5A3_CUCSA); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0004553 NbS00006159g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.6|0.9|1|1|10|53|377; (*GB) gi|225426554|ref|XP_002272348.1| (e_value=1e-178) PREDICTED: alcohol dehydrogenase-like 3 [Vitis vinifera];; (*SWP) sp|Q8VZ49|ADHL4_ARATH (e_value=1e-156) Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1;; (*TAIR) AT1G64710.1 (e_value=7e-158) | Symbols: | GroES-like zinc-binding dehydrogenase family protein | chr1:24044638-24046313 FORWARD LENGTH=396;; (*ITAG) Solyc08g083280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62949774-62952151 transcript_region:SL2.40ch08:62949774..62952151+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** B6TDN5_MAIZE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00060321g0003.1 protein AED:0.29 eAED:0.30 QI:389|1|0.75|1|0.66|0.75|4|0|352; (*GB) gi|21693562|gb|AAM75346.1|AF520810_1 (e_value=0.0) DNA-binding protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|Q69QZ0|P2C27_ORYSJ (e_value=3e-143) Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=6e-110) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc07g007220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1957198-1960831 transcript_region:SL2.40ch07:1957198..1960831- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00024584g0005.1 protein AED:0.39 eAED:0.39 QI:0|0.57|0.62|1|0.71|0.75|8|99|229; (*GB) gi|78191396|gb|ABB29919.1| (e_value=6e-37) unknown [Solanum tuberosum];; (*TAIR) AT5G64200.2 (e_value=1e-26) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc04g074040.2.1 (e_value=8e-39) genomic_reference:SL2.40ch04 gene_region:57655664-57660174 transcript_region:SL2.40ch04:57655664..57660174+ go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00050078g0006.1 protein AED:0.04 eAED:0.08 QI:0|0.57|0.5|1|0.57|0.5|8|0|604; (*GB) gi|255565409|ref|XP_002523695.1| (e_value=0.0) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=0.0) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=0.0) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc11g069090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50759436-50762771 transcript_region:SL2.40ch11:50759436..50762771+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C0NDN3_AJECG); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00014416g0018.1 protein AED:0.35 eAED:0.37 QI:48|0|0.33|1|0|0.33|3|0|95; (*GB) gi|359482259|ref|XP_002266281.2| (e_value=2e-35) PREDICTED: thioredoxin-like 3-3-like [Vitis vinifera];; (*SWP) sp|Q7XSQ7|TRL33_ORYSJ (e_value=7e-33) Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica GN=Os04g0560200 PE=2 SV=2;; (*TAIR) AT3G53220.1 (e_value=3e-31) | Symbols: | Thioredoxin superfamily protein | chr3:19722032-19722615 FORWARD LENGTH=126;; (*ITAG) Solyc09g008290.2.1 (e_value=2e-46) genomic_reference:SL2.40ch09 gene_region:1751435-1754554 transcript_region:SL2.40ch09:1751435..1754554- go_terms:GO:0032403 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7LUF8_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0032403 NbS00014416g0022.1 protein AED:0.01 eAED:0.01 QI:277|0.9|0.54|1|0.9|1|11|208|447; (*GB) gi|297739960|emb|CBI30142.3| (e_value=4e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G03420.1 (e_value=3e-37) | Symbols: | 5'-AMP-activated protein kinase-related | chr5:845641-848705 FORWARD LENGTH=598;; (*ITAG) Solyc09g008260.2.1 (e_value=1e-177) genomic_reference:SL2.40ch09 gene_region:1729051-1737560 transcript_region:SL2.40ch09:1729051..1737560+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014416g0002.1 protein AED:0.02 eAED:0.02 QI:352|0.83|0.85|1|0|0.14|7|848|116 NbS00014416g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|1|1|3|0|469; (*GB) gi|225432698|ref|XP_002278762.1| (e_value=2e-103) PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=9e-97) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=7e-98) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc09g008300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1755154-1757190 transcript_region:SL2.40ch09:1755154..1757190+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LE02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00014416g0001.1 protein AED:0.29 eAED:0.31 QI:63|0|0.5|1|0|1|2|0|399; (*GB) gi|115361537|gb|ABI95859.1| (e_value=0.0) S-adenosyl-L-methionine synthase [Nicotiana suaveolens];; (*SWP) sp|P43282|METK3_SOLLC (e_value=0.0) S-adenosylmethionine synthase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1;; (*TAIR) AT2G36880.2 (e_value=0.0) | Symbols: MAT3 | methionine adenosyltransferase 3 | chr2:15479721-15480893 REVERSE LENGTH=390;; (*ITAG) Solyc09g008280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1749950-1751122 transcript_region:SL2.40ch09:1749950..1751122+ go_terms:GO:0004478,GO:0005507 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0004478,GO:0005507 NbS00014416g0019.1 protein AED:0.09 eAED:0.17 QI:23|0|0|1|0|0|2|0|76; (*ITAG) Solyc00g020010.1.1 (e_value=4e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806787-11807014 transcript_region:SL2.40ch00:11806787..11807014- functional_description:"Unknown Protein (AHRD V1)"; NbS00028280g0004.1 protein AED:0.00 eAED:0.00 QI:92|1|1|1|0|0|3|169|288; (*GB) gi|359480022|ref|XP_002272734.2| (e_value=2e-121) PREDICTED: NAC domain-containing protein 21/22 [Vitis vinifera];; (*SWP) sp|Q84TE6|NAC22_ARATH (e_value=5e-62) NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2;; (*TAIR) AT4G28530.1 (e_value=3e-93) | Symbols: anac074, NAC074 | NAC domain containing protein 74 | chr4:14090725-14094603 REVERSE LENGTH=352;; (*ITAG) Solyc09g025310.2.1 (e_value=9e-144) genomic_reference:SL2.40ch09 gene_region:19323700-19328080 transcript_region:SL2.40ch09:19323700..19328080- go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRP6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00058641g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|482; (*GB) gi|147841887|emb|CAN65217.1| (e_value=5e-129) hypothetical protein VITISV_024689 [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=8e-58) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=3e-107) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051930.1.1 (e_value=3e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57797942-57799054 transcript_region:SL2.40ch07:57797942..57799054+ go_terms:GO:0004691 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00015669g0010.1 protein AED:0.24 eAED:0.24 QI:105|0.75|0.66|1|0.37|0.55|9|497|222; (*GB) gi|225456849|ref|XP_002276527.1| (e_value=4e-90) PREDICTED: uncharacterized protein LOC100243259 [Vitis vinifera];; (*SWP) sp|Q0WWT7|STR11_ARATH (e_value=6e-79) Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1;; (*TAIR) AT4G24750.1 (e_value=4e-80) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:12758422-12760749 REVERSE LENGTH=292;; (*ITAG) Solyc12g021340.1.1 (e_value=4e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15682901-15690387 transcript_region:SL2.40ch12:15682901..15690387- functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00015669g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.88|1|1|1|9|229|423; (*GB) gi|225447502|ref|XP_002265275.1| (e_value=3e-168) PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera];; (*SWP) sp|P49572|TRPC_ARATH (e_value=8e-141) Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2;; (*TAIR) AT5G48220.1 (e_value=1e-149) | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379;; (*ITAG) Solyc03g111850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56510892-56516492 transcript_region:SL2.40ch03:56510892..56516492- go_terms:GO:0004425,GO:0004635 functional_description:"Indole-3-glycerol phosphate synthase-like (AHRD V1 **** C8TFG9_ORYSI); contains Interpro domain(s) IPR013798 Indole-3-glycerol phosphate synthase "; GO:0004425,GO:0004635 NbS00015669g0104.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.75|1|1|4|0|320 NbS00015669g0203.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|366 NbS00034687g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.93|0.82|1|0.87|0.88|17|76|1192; (*GB) gi|350535000|ref|NP_001234426.1| (e_value=0.0) kinesin related protein [Solanum lycopersicum];; (*SWP) sp|Q9NS87|KIF15_HUMAN (e_value=4e-67) Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G20150.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr3:7031412-7036499 FORWARD LENGTH=1114;; (*ITAG) Solyc07g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64289272-64295444 transcript_region:SL2.40ch07:64289272..64295444- go_terms:GO:0008574 functional_description:"Kinesin motor family protein (AHRD V1 *-** D7LAW5_ARALY); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0008574 NbS00004666g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.25|0.2|0.8|1|1|5|159|386; (*GB) gi|297809667|ref|XP_002872717.1| (e_value=4e-48) hypothetical protein ARALYDRAFT_490122 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G04885.1 (e_value=4e-50) | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808;; (*ITAG) Solyc12g094490.1.1 (e_value=6e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63044375-63052170 transcript_region:SL2.40ch12:63044375..63052170+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR008942 ENTH/VHS "; GO:0005622 NbS00056786g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0.87|1|1|1|8|0|528; (*GB) gi|289721336|gb|ADD17678.1| (e_value=0.0) squalene epoxidase [Withania somnifera];; (*SWP) sp|O48651|ERG1_PANGI (e_value=0.0) Squalene monooxygenase OS=Panax ginseng PE=2 SV=1;; (*TAIR) AT1G58440.1 (e_value=0.0) | Symbols: XF1, SQE1 | FAD/NAD(P)-binding oxidoreductase family protein | chr1:21714094-21717246 REVERSE LENGTH=531;; (*ITAG) Solyc04g077440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59945629-59949271 transcript_region:SL2.40ch04:59945629..59949271- go_terms:GO:0005515,GO:0008144 functional_description:"Squalene monooxygenase (AHRD V1 ***- Q506K3_DATIN); contains Interpro domain(s) IPR013698 Squalene epoxidase "; GO:0005515,GO:0008144 NbS00056786g0007.1 protein AED:0.07 eAED:0.07 QI:176|1|1|1|0.5|0.57|7|898|232; (*GB) gi|255537962|ref|XP_002510046.1| (e_value=5e-97) heat shock protein binding protein, putative [Ricinus communis];; (*TAIR) AT4G07990.1 (e_value=4e-76) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:4825650-4828937 REVERSE LENGTH=230;; (*ITAG) Solyc04g077430.2.1 (e_value=5e-133) genomic_reference:SL2.40ch04 gene_region:59934371-59945884 transcript_region:SL2.40ch04:59934371..59945884+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- Q0YS80_9CHLB); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00017885g0003.1 protein AED:0.09 eAED:0.10 QI:0|1|0.6|1|0.75|0.6|5|0|348; (*GB) gi|289540945|gb|ADD09615.1| (e_value=4e-141) bristled-like protein [Trifolium repens];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=1e-55) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT5G65090.1 (e_value=2e-134) | Symbols: MRH3, BST1, DER4 | DNAse I-like superfamily protein | chr5:26004282-26006656 FORWARD LENGTH=529;; (*ITAG) Solyc04g054830.2.1 (e_value=1e-177) genomic_reference:SL2.40ch04 gene_region:52445213-52449024 transcript_region:SL2.40ch04:52445213..52449024+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 ***- Q9FJQ6_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00014340g0008.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|3|0|135; (*ITAG) Solyc04g018260.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11187511-11188311 transcript_region:SL2.40ch04:11187511..11188311+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014340g0006.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|0|0|3|0|113 NbS00014340g0007.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.5|0|0|2|0|61 NbS00015347g0005.1 protein AED:0.05 eAED:0.13 QI:0|0|0.33|1|0|0|3|659|467; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=1e-124) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT3G52060.2 (e_value=4e-114) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:19310987-19312027 REVERSE LENGTH=346;; (*ITAG) Solyc06g073970.1.1 (e_value=1e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42111866-42112939 transcript_region:SL2.40ch06:42111866..42112939- go_terms:GO:0005515 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00003574g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|268; (*GB) gi|225469774|ref|XP_002274117.1| (e_value=2e-128) PREDICTED: probable mitochondrial 2-oxoglutarate/malate carrier protein [Vitis vinifera];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=5e-54) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT2G22500.1 (e_value=8e-115) | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein 5 | chr2:9563531-9564472 REVERSE LENGTH=313;; (*ITAG) Solyc11g010500.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3562962-3563936 transcript_region:SL2.40ch11:3562962..3563936- go_terms:GO:0016020 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MMX1_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00021842g0001.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|274; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-55) hypothetical protein [Nicotiana tabacum]; NbS00021842g0005.1 protein AED:0.42 eAED:0.54 QI:0|0|0|1|0|0|3|0|119; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00058299g0004.1 protein AED:0.06 eAED:0.06 QI:199|1|1|1|0.9|0.81|11|1188|325; (*GB) gi|76556494|emb|CAJ32462.1| (e_value=0.0) putative cytosolic cysteine synthase 7 [Nicotiana tabacum];; (*SWP) sp|O81154|CYSK_SOLTU (e_value=0.0) Cysteine synthase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G14880.4 (e_value=8e-171) | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322;; (*ITAG) Solyc09g082060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63298831-63303187 transcript_region:SL2.40ch09:63298831..63303187+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q3LAG5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00036388g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|106; (*ITAG) Solyc02g090100.1.1 (e_value=2e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:46306913-46307401 transcript_region:SL2.40ch02:46306913..46307401+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036388g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|469; (*GB) gi|42741727|gb|AAS45124.1| (e_value=0.0) WAK-like kinase [Solanum lycopersicum];; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=0.0) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT2G23450.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:9988926-9991244 REVERSE LENGTH=708;; (*ITAG) Solyc02g090110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46307613-46313725 transcript_region:SL2.40ch02:46307613..46313725- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00036388g0005.1 protein AED:0.31 eAED:0.38 QI:112|0.66|0.5|1|0|0|4|246|40 NbS00039549g0001.1 protein AED:0.03 eAED:0.04 QI:0|1|0.75|1|0.33|0.25|4|840|1212; (*GB) gi|255539416|ref|XP_002510773.1| (e_value=0.0) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q38953|DHX8_ARATH (e_value=0.0) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2;; (*TAIR) AT3G26560.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc07g039550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:45039463-45043515 transcript_region:SL2.40ch07:45039463..45043515- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00019912g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|0|112; (*GB) gi|51587332|emb|CAF31508.1| (e_value=2e-69) S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase [Nicotiana suaveolens];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=1e-31) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT3G11480.1 (e_value=1e-25) | Symbols: BSMT1, ATBSMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:3614544-3617137 FORWARD LENGTH=379;; (*ITAG) Solyc04g055260.2.1 (e_value=8e-42) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00057370g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|30013673|gb|AAP03879.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 216 [Nicotiana tabacum];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=1e-170) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=8e-172) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g082440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44541823-44543082 transcript_region:SL2.40ch06:44541823..44543082- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 ***- A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00014716g0010.1 protein AED:0.36 eAED:0.47 QI:36|0|0.5|1|0|0.5|2|0|153; (*GB) gi|225446813|ref|XP_002279242.1| (e_value=1e-48) PREDICTED: putative ferric-chelate reductase 1 [Vitis vinifera];; (*TAIR) AT4G18260.1 (e_value=9e-32) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr4:10093524-10097337 REVERSE LENGTH=545;; (*ITAG) Solyc07g056230.2.1 (e_value=2e-50) genomic_reference:SL2.40ch07 gene_region:61402318-61404293 transcript_region:SL2.40ch07:61402318..61404293+ functional_description:"Cytochrome B561-related protein (AHRD V1 **-- Q1H8M6_BETVU); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00014716g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|592|622; (*GB) gi|359485832|ref|XP_002268817.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera];; (*SWP) sp|Q9LKR4|FRS10_ARATH (e_value=0.0) Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2;; (*TAIR) AT5G28530.1 (e_value=0.0) | Symbols: FRS10 | FAR1-related sequence 10 | chr5:10525078-10527300 REVERSE LENGTH=685;; (*ITAG) Solyc07g045520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55960774-55963655 transcript_region:SL2.40ch07:55960774..55963655+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00014716g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.6|1|1|5|0|910; (*GB) gi|359485832|ref|XP_002268817.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera];; (*SWP) sp|Q9FIB2|PP373_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1;; (*TAIR) AT5G09950.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:3102877-3105864 REVERSE LENGTH=995;; (*ITAG) Solyc07g045510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55952757-55956284 transcript_region:SL2.40ch07:55952757..55956284- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2R8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014716g0015.1 protein AED:0.52 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|90 NbS00006062g0008.1 protein AED:0.11 eAED:0.11 QI:349|1|1|1|1|1|5|345|209; (*GB) gi|224078691|ref|XP_002305604.1| (e_value=2e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT4G28556.1 (e_value=3e-22) | Symbols: RIC7 | PAK-box/P21-Rho-binding family protein | chr4:14114754-14115795 FORWARD LENGTH=216;; (*ITAG) Solyc10g005340.2.1 (e_value=6e-51) genomic_reference:SL2.40ch10 gene_region:253916-256511 transcript_region:SL2.40ch10:253916..256511- functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00026774g0004.1 protein AED:0.15 eAED:0.16 QI:12|0|0|1|0|0.5|2|0|373; (*GB) gi|356572078|ref|XP_003554197.1| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max];; (*TAIR) AT3G57880.1 (e_value=2e-180) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61024539-61026866 transcript_region:SL2.40ch10:61024539..61026866+ functional_description:"Phosphoribosyltransferase (Fragment) (AHRD V1 *--- Q8LSY7_SEQSE); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00057225g0005.1 protein AED:0.34 eAED:0.34 QI:303|0.8|0.66|1|0.8|0.83|6|366|255; (*GB) gi|224123804|ref|XP_002319168.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23840.1 (e_value=7e-55) | Symbols: | HNH endonuclease | chr2:10153982-10155600 REVERSE LENGTH=284; NbS00023350g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.66|0.83|1|1|6|0|686; (*GB) gi|225458810|ref|XP_002283295.1| (e_value=8e-175) PREDICTED: uncharacterized protein LOC100242050 [Vitis vinifera];; (*TAIR) AT1G49890.1 (e_value=3e-116) | Symbols: QWRF2 | Family of unknown function (DUF566) | chr1:18470282-18473463 FORWARD LENGTH=659;; (*ITAG) Solyc04g078000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60456888-60465519 transcript_region:SL2.40ch04:60456888..60465519- go_terms:GO:0005737 functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; GO:0005737 NbS00012084g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|359473412|ref|XP_002266599.2| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera];; (*TAIR) AT1G24095.1 (e_value=7e-29) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:8523345-8524690 FORWARD LENGTH=213;; (*ITAG) Solyc05g006100.2.1 (e_value=3e-38) genomic_reference:SL2.40ch05 gene_region:824706-827085 transcript_region:SL2.40ch05:824706..827085+ functional_description:"YuxK (AHRD V1 *--- A3U9R9_CROAH); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00012084g0001.1 protein AED:0.56 eAED:0.82 QI:0|0|0|0.66|1|1|3|0|167; (*GB) gi|255588184|ref|XP_002534526.1| (e_value=6e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G24095.1 (e_value=2e-35) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:8523345-8524690 FORWARD LENGTH=213; NbS00012084g0013.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0.81|0.75|12|199|454; (*GB) gi|297843866|ref|XP_002889814.1| (e_value=0.0) DNA polymerase lambda [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q4R380|DPOLL_MACFA (e_value=3e-66) DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1;; (*TAIR) AT1G10520.1 (e_value=0.0) | Symbols: | DNA polymerase lambda (POLL) | chr1:3465964-3469248 FORWARD LENGTH=529;; (*ITAG) Solyc05g006120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:829783-837498 transcript_region:SL2.40ch05:829783..837498- go_terms:GO:0003887 functional_description:"Polymerase (DNA directed) mu (AHRD V1 **** Q66HH0_RAT); contains Interpro domain(s) IPR002054 DNA-directed DNA polymerase, family X "; GO:0003887 NbS00012084g0009.1 protein AED:0.19 eAED:0.19 QI:97|1|1|1|0.5|0.66|3|553|179; (*GB) gi|351734434|ref|NP_001237024.1| (e_value=6e-65) uncharacterized protein LOC100306067 precursor [Glycine max];; (*TAIR) AT1G10522.2 (e_value=8e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3470009-3471291 FORWARD LENGTH=179;; (*ITAG) Solyc05g006110.2.1 (e_value=2e-77) genomic_reference:SL2.40ch05 gene_region:826982-828940 transcript_region:SL2.40ch05:826982..828940- functional_description:"Unknown Protein (AHRD V1)"; NbS00019735g0006.1 protein AED:0.45 eAED:0.45 QI:0|0.87|0.66|0.88|1|1|9|0|315; (*GB) gi|225437465|ref|XP_002273574.1| (e_value=3e-178) PREDICTED: mitochondrial nicotinamide adenine dinucleotide transporter 1 isoform 1 [Vitis vinifera];; (*SWP) sp|P40556|YIA6_YEAST (e_value=7e-64) Mitochondrial nicotinamide adenine dinucleotide transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIA6 PE=1 SV=1;; (*TAIR) AT2G47490.1 (e_value=1e-162) | Symbols: ATNDT1, NDT1 | NAD+ transporter 1 | chr2:19487549-19489311 FORWARD LENGTH=312;; (*ITAG) Solyc09g075490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62687636-62694652 transcript_region:SL2.40ch09:62687636..62694652- go_terms:GO:0051724 functional_description:"Mitochondrial carrier like protein (AHRD V1 ***- Q4A3J5_ARATH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0051724 NbS00025100g0014.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0.28|0.25|8|0|1294; (*GB) gi|296083564|emb|CBI23556.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5G1T1|PP272_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1;; (*TAIR) AT3G49170.1 (e_value=0.0) | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18226954-18229600 REVERSE LENGTH=850;; (*ITAG) Solyc01g097670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80193056-80195803 transcript_region:SL2.40ch01:80193056..80195803+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025100g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0.25|1|0|0|4|988|396; (*GB) gi|225470179|ref|XP_002268211.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Vitis vinifera];; (*SWP) sp|Q9M1D8|PP288_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1;; (*TAIR) AT3G60050.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:22180231-22181652 REVERSE LENGTH=473;; (*ITAG) Solyc01g097730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80213909-80217795 transcript_region:SL2.40ch01:80213909..80217795+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025100g0012.1 protein AED:0.40 eAED:0.40 QI:0|1|0.88|1|1|1|9|0|300; (*GB) gi|225451281|ref|XP_002277809.1| (e_value=0.0) PREDICTED: tetratricopeptide repeat protein 35 [Vitis vinifera];; (*SWP) sp|Q9CRD2|TTC35_MOUSE (e_value=3e-56) Tetratricopeptide repeat protein 35 OS=Mus musculus GN=Ttc35 PE=2 SV=1;; (*TAIR) AT3G04830.1 (e_value=6e-180) | Symbols: | Protein prenylyltransferase superfamily protein | chr3:1326289-1329132 FORWARD LENGTH=303;; (*ITAG) Solyc01g097740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80219250-80225601 transcript_region:SL2.40ch01:80219250..80225601+ go_terms:GO:0005515 functional_description:"Tetratricopeptide repeat protein KIAA0103 (AHRD V1 ***- B6TNR5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00025100g0009.1 protein AED:0.76 eAED:0.89 QI:0|0|0|0.5|1|1|4|0|153; (*ITAG) Solyc01g097730.2.1 (e_value=4e-18) genomic_reference:SL2.40ch01 gene_region:80213909-80217795 transcript_region:SL2.40ch01:80213909..80217795+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025100g0010.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.25|1|1|4|0|62; (*ITAG) Solyc02g071670.2.1 (e_value=7e-18) genomic_reference:SL2.40ch02 gene_region:35618889-35620478 transcript_region:SL2.40ch02:35618889..35620478+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028134g0007.1 protein AED:0.14 eAED:0.14 QI:191|0.81|0.88|0.94|0.56|0.64|17|45|739; (*GB) gi|302144194|emb|CBI23321.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65418|APC4_ARATH (e_value=0.0) Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=1 SV=2;; (*TAIR) AT4G21530.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:11450743-11455862 FORWARD LENGTH=777;; (*ITAG) Solyc02g079050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38248802-38262570 transcript_region:SL2.40ch02:38248802..38262570- functional_description:"Anaphase promoting complex subunit 4 (AHRD V1 ***- Q3Y4F2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00028134g0008.1 protein AED:0.24 eAED:0.25 QI:350|1|0.85|1|0.5|0.57|7|0|224; (*GB) gi|255557090|ref|XP_002519577.1| (e_value=6e-70) Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|Q7SXU0|EI3JA_DANRE (e_value=6e-13) Eukaryotic translation initiation factor 3 subunit J-A OS=Danio rerio GN=eif3ja PE=1 SV=1;; (*TAIR) AT1G66070.2 (e_value=2e-55) | Symbols: | Translation initiation factor eIF3 subunit | chr1:24596194-24597520 REVERSE LENGTH=226;; (*ITAG) Solyc02g079060.2.1 (e_value=2e-88) genomic_reference:SL2.40ch02 gene_region:38263644-38270218 transcript_region:SL2.40ch02:38263644..38270218- functional_description:"Eukaryotic translation initiation factor 3 subunit J (AHRD V1 *-*- B9ENH4_SALSA); contains Interpro domain(s) IPR013906 Translation initiation factor eIF3 subunit "; NbS00037102g0009.1 protein AED:0.15 eAED:0.15 QI:209|1|1|1|1|1|7|419|449; (*GB) gi|224053525|ref|XP_002297856.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69040.1 (e_value=3e-175) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25958196-25960079 FORWARD LENGTH=451;; (*ITAG) Solyc01g010000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00037102g0004.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|161; (*GB) gi|224053525|ref|XP_002297856.1| (e_value=8e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69040.1 (e_value=7e-27) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25958196-25960079 FORWARD LENGTH=451;; (*ITAG) Solyc01g010000.2.1 (e_value=6e-47) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00011145g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|308; (*GB) gi|255585630|ref|XP_002533502.1| (e_value=4e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07350.1 (e_value=2e-77) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g083160.1.1 (e_value=6e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44984247-44985128 transcript_region:SL2.40ch06:44984247..44985128- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B4FP41_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00011145g0006.1 protein AED:0.28 eAED:0.28 QI:191|1|1|1|0.75|0.66|9|324|277; (*GB) gi|147834652|emb|CAN63106.1| (e_value=4e-161) hypothetical protein VITISV_000496 [Vitis vinifera];; (*SWP) sp|Q9SRS9|CHIP_ARATH (e_value=8e-138) E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1;; (*TAIR) AT3G07370.1 (e_value=6e-139) | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70-interacting protein | chr3:2358323-2360301 REVERSE LENGTH=278;; (*ITAG) Solyc06g083150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44977538-44982219 transcript_region:SL2.40ch06:44977538..44982219+ go_terms:GO:0034450 functional_description:"U-box domain-containing protein (AHRD V1 **-- C6HIA6_AJECH); contains Interpro domain(s) IPR003613 U box domain "; GO:0034450 NbS00035991g0004.1 protein AED:0.48 eAED:0.50 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=2e-45) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P93401|NU2M_OENBE (e_value=2e-24) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=6e-24) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00035991g0003.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|0|0|2|0|89; (*ITAG) Solyc00g244290.1.1 (e_value=6e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00013621g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|186; (*GB) gi|310892570|gb|ADP37427.1| (e_value=6e-66) ethylene-responsive-element-binding factor 12 [Petunia x hybrida];; (*SWP) sp|Q40478|ERF5_TOBAC (e_value=2e-63) Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1;; (*TAIR) AT4G17490.1 (e_value=2e-37) | Symbols: ATERF6, ERF-6-6, ERF6 | ethylene responsive element binding factor 6 | chr4:9752973-9753821 REVERSE LENGTH=282;; (*ITAG) Solyc03g093540.1.1 (e_value=2e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48354043-48354729 transcript_region:SL2.40ch03:48354043..48354729- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00010980g0003.1 protein AED:0.19 eAED:0.24 QI:0|1|0.6|1|1|1|5|0|330; (*GB) gi|225428564|ref|XP_002281077.1| (e_value=0.0) PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XIA4|CCS1_ARATH (e_value=0.0) Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1;; (*TAIR) AT1G49380.1 (e_value=0.0) | Symbols: | cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547;; (*ITAG) Solyc10g051200.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47193947-47197659 transcript_region:SL2.40ch10:47193947..47197659- functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7KE35_ARALY); contains Interpro domain(s) IPR007816 ResB-like "; NbS00008698g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.44|0.88|1|1|9|260|648; (*GB) gi|297734942|emb|CBI17176.3| (e_value=2e-132) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8T1P1|Y3453_DICDI (e_value=9e-32) Uncharacterized protein DDB_G0273453/DDB_G0273565 OS=Dictyostelium discoideum GN=DDB_G0273453 PE=4 SV=2;; (*TAIR) AT5G60760.1 (e_value=2e-122) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24438465-24442004 FORWARD LENGTH=738;; (*ITAG) Solyc11g069780.1.1 (e_value=8e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51488633-51493806 transcript_region:SL2.40ch11:51488633..51493806- functional_description:"2-phosphoglycerate kinase (AHRD V1 *-*- D9PV08_METTM)"; NbS00058984g0005.1 protein AED:0.22 eAED:0.22 QI:488|0.75|0.8|1|0.5|0.2|5|196|315; (*GB) gi|22651698|gb|AAM48290.1| (e_value=2e-90) homeodomain protein Hfi22 [Nicotiana tabacum];; (*SWP) sp|P46668|ATHB6_ARATH (e_value=1e-40) Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1;; (*TAIR) AT2G22430.1 (e_value=8e-42) | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526470-9527612 REVERSE LENGTH=311;; (*ITAG) Solyc05g051460.2.1 (e_value=3e-110) genomic_reference:SL2.40ch05 gene_region:60958329-60960538 transcript_region:SL2.40ch05:60958329..60960538+ go_terms:GO:0016563,GO:0043565 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q9FXN8_ZINEL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0016563,GO:0043565 NbS00028738g0013.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|226; (*GB) gi|255562880|ref|XP_002522445.1| (e_value=4e-103) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G09157.1 (e_value=8e-79) | Symbols: | Protein of unknown function (DUF679) | chr1:2951665-2952396 REVERSE LENGTH=243;; (*ITAG) Solyc05g007920.2.1 (e_value=2e-133) genomic_reference:SL2.40ch05 gene_region:2350007-2351451 transcript_region:SL2.40ch05:2350007..2351451+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00028738g0019.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.25|1|0.66|1|4|251|248; (*GB) gi|359491995|ref|XP_003634351.1| (e_value=3e-102) PREDICTED: probable NAD(P)H-dependent oxidoreductase 1-like [Vitis vinifera];; (*SWP) sp|Q7G764|NADO1_ORYSJ (e_value=9e-71) Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1;; (*TAIR) AT1G59960.1 (e_value=6e-72) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326;; (*ITAG) Solyc12g042470.1.1 (e_value=5e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43212589-43216070 transcript_region:SL2.40ch12:43212589..43216070+ go_terms:GO:0032866,GO:0032867 functional_description:"Reductase 2 (AHRD V1 **** Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00028738g0020.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|0.66|0.5|4|0|164; (*GB) gi|255562882|ref|XP_002522446.1| (e_value=2e-65) 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9SX68|RK18_ARATH (e_value=2e-17) 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1;; (*TAIR) AT1G14205.1 (e_value=3e-63) | Symbols: | Ribosomal L18p/L5e family protein | chr1:4855582-4856762 FORWARD LENGTH=165;; (*ITAG) Solyc05g007910.2.1 (e_value=1e-101) genomic_reference:SL2.40ch05 gene_region:2347177-2349393 transcript_region:SL2.40ch05:2347177..2349393+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6WB57_9FIRM); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00028738g0012.1 protein AED:0.36 eAED:0.36 QI:0|1|0.5|1|1|1|2|307|102; (*GB) gi|225448091|ref|XP_002276553.1| (e_value=1e-56) PREDICTED: 50S ribosomal protein L18-like [Vitis vinifera];; (*SWP) sp|A9FGF8|RL18_SORC5 (e_value=4e-15) 50S ribosomal protein L18 OS=Sorangium cellulosum (strain So ce56) GN=rplR PE=3 SV=1;; (*TAIR) AT1G14205.1 (e_value=6e-53) | Symbols: | Ribosomal L18p/L5e family protein | chr1:4855582-4856762 FORWARD LENGTH=165;; (*ITAG) Solyc05g007910.2.1 (e_value=9e-64) genomic_reference:SL2.40ch05 gene_region:2347177-2349393 transcript_region:SL2.40ch05:2347177..2349393+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6WB57_9FIRM); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00028738g0005.1 protein AED:0.09 eAED:0.09 QI:2183|0.83|0.71|1|1|1|7|0|401; (*GB) gi|225425664|ref|XP_002269607.1| (e_value=0.0) PREDICTED: beta-1,3-galactosyltransferase 15 [Vitis vinifera];; (*SWP) sp|Q8L7F9|B3GTF_ARATH (e_value=1e-174) Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1;; (*TAIR) AT1G26810.1 (e_value=1e-175) | Symbols: GALT1 | galactosyltransferase1 | chr1:9286862-9289327 REVERSE LENGTH=643;; (*ITAG) Solyc05g007930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2352505-2356069 transcript_region:SL2.40ch05:2352505..2356069- go_terms:GO:0010488 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 **** D8SVH6_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0010488 NbS00051929g0003.1 protein AED:0.29 eAED:0.29 QI:291|0.85|0.85|1|0.8|0.76|21|668|731; (*GB) gi|356504293|ref|XP_003520931.1| (e_value=0.0) PREDICTED: mRNA-capping enzyme-like [Glycine max];; (*SWP) sp|O55236|MCE1_MOUSE (e_value=7e-88) mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1;; (*TAIR) AT3G09100.2 (e_value=0.0) | Symbols: | mRNA capping enzyme family protein | chr3:2788435-2792913 REVERSE LENGTH=672;; (*ITAG) Solyc09g011930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5190802-5203526 transcript_region:SL2.40ch09:5190802..5203526- go_terms:GO:0004484 functional_description:"mRNA-capping enzyme subunit alpha (AHRD V1 *-** B6JYQ9_SCHJY); contains Interpro domain(s) IPR017074 mRNA capping enzyme, bifunctional "; GO:0004484 NbS00047841g0003.1 protein AED:0.49 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|87 NbS00047841g0002.1 protein AED:0.02 eAED:0.02 QI:0|0.85|0.62|1|1|1|8|0|825; (*GB) gi|225461482|ref|XP_002282528.1| (e_value=0.0) PREDICTED: dynamin-like protein C-like [Vitis vinifera];; (*SWP) sp|F4HPR5|DRP5A_ARATH (e_value=0.0) Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1;; (*TAIR) AT1G53140.1 (e_value=0.0) | Symbols: DRP5A | Dynamin related protein 5A | chr1:19799271-19802441 FORWARD LENGTH=817;; (*ITAG) Solyc07g063080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62881275-62885932 transcript_region:SL2.40ch07:62881275..62885932- go_terms:GO:0005525 functional_description:"Dynamin family protein (AHRD V1 ***- D7KKE2_ARALY); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00018899g0015.1 protein AED:0.02 eAED:0.02 QI:153|1|1|1|1|1|3|248|478; (*GB) gi|225437789|ref|XP_002281529.1| (e_value=6e-151) PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Vitis vinifera];; (*SWP) sp|Q8LL69|DBNBT_TAXCA (e_value=2e-56) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase OS=Taxus canadensis GN=TAX10 PE=1 SV=1;; (*TAIR) AT3G62160.1 (e_value=5e-123) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:23014333-23015808 REVERSE LENGTH=428;; (*ITAG) Solyc01g068140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69640064-69642385 transcript_region:SL2.40ch01:69640064..69642385+ go_terms:GO:0016740 functional_description:"10-deacetylbaccatin III-10-O-acetyl transferase-like (AHRD V1 **-* Q9FTH0_ORYSJ); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00018899g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.33|0.83|0.6|0.5|6|6|838; (*GB) gi|255548249|ref|XP_002515181.1| (e_value=0.0) protein transport protein sec23, putative [Ricinus communis];; (*SWP) sp|A5DA00|SEC23_PICGU (e_value=5e-32) Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3;; (*TAIR) AT4G01810.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc01g080850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72654375-72660542 transcript_region:SL2.40ch01:72654375..72660542- go_terms:GO:0030127 functional_description:"Protein transport protein SEC23 (AHRD V1 ***- C5MDU5_CANTT); contains Interpro domain(s) IPR006900 Sec23/Sec24 helical region "; GO:0030127 NbS00018899g0002.1 protein AED:0.45 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|225437779|ref|XP_002281404.1| (e_value=7e-18) PREDICTED: protein transport protein SEC23 [Vitis vinifera];; (*TAIR) AT4G01810.1 (e_value=1e-16) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc01g080850.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:72654375-72660542 transcript_region:SL2.40ch01:72654375..72660542- go_terms:GO:0030127 functional_description:"Protein transport protein SEC23 (AHRD V1 ***- C5MDU5_CANTT); contains Interpro domain(s) IPR006900 Sec23/Sec24 helical region "; GO:0030127 NbS00018899g0024.1 protein AED:0.12 eAED:0.12 QI:0|0|0.25|1|0|0.25|4|119|511; (*GB) gi|225437781|ref|XP_002281415.1| (e_value=0.0) PREDICTED: isopenicillin N epimerase-like [Vitis vinifera];; (*TAIR) AT3G62130.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:23004994-23006358 FORWARD LENGTH=454;; (*ITAG) Solyc01g068160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69652662-69658418 transcript_region:SL2.40ch01:69652662..69658418- go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase like (AHRD V1 **-- B0JY75_MICAN); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00018899g0006.1 protein AED:0.20 eAED:0.20 QI:360|0.77|0.9|1|0.22|0.4|10|1615|115; (*GB) gi|255548253|ref|XP_002515183.1| (e_value=6e-21) NEFA-interacting nuclear protein NIP30, putative [Ricinus communis];; (*TAIR) AT3G62140.1 (e_value=7e-13) | Symbols: | CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:23007277-23008626 FORWARD LENGTH=214;; (*ITAG) Solyc01g068150.2.1 (e_value=9e-33) genomic_reference:SL2.40ch01 gene_region:69642656-69648663 transcript_region:SL2.40ch01:69642656..69648663- functional_description:"Chromosome 11 contig 1 DNA sequence (AHRD V1 *-*- Q00YQ7_OSTTA); contains Interpro domain(s) IPR019331 NEFA-interacting nuclear protein NIP30, N-terminal "; NbS00035002g0021.1 protein AED:0.21 eAED:0.23 QI:838|0.71|0.6|1|0.57|0.46|15|0|575; (*GB) gi|357491757|ref|XP_003616166.1| (e_value=0.0) Sucrose synthase [Medicago truncatula];; (*SWP) sp|P49040|SUS1_ARATH (e_value=0.0) Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=1 SV=3;; (*TAIR) AT1G73370.1 (e_value=0.0) | Symbols: SUS6, ATSUS6 | sucrose synthase 6 | chr1:27584533-27588326 REVERSE LENGTH=942;; (*ITAG) Solyc02g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39893591-39897878 transcript_region:SL2.40ch02:39893591..39897878- go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q9FHU4_ARATH); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria "; GO:0016157 NbS00035002g0025.1 protein AED:0.02 eAED:0.02 QI:0|0.83|0.71|1|0.83|0.85|7|0|666; (*GB) gi|255571259|ref|XP_002526579.1| (e_value=0.0) hypothetical protein RCOM_1603380 [Ricinus communis];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=6e-65) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT1G65910.1 (e_value=3e-140) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g081270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39877970-39887403 transcript_region:SL2.40ch02:39877970..39887403+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00035002g0019.1 protein AED:0.10 eAED:0.06 QI:0|0.66|0.3|0.9|1|0.9|10|61|479; (*GB) gi|225466225|ref|XP_002267603.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247879 [Vitis vinifera];; (*TAIR) AT1G65900.1 (e_value=9e-160) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to 306 proteins in 119 species: Archae - 19; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24516023-24518325 REVERSE LENGTH=408;; (*ITAG) Solyc02g081270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39877970-39887403 transcript_region:SL2.40ch02:39877970..39887403+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00035002g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|715; (*GB) gi|359475106|ref|XP_003631587.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera];; (*SWP) sp|P93008|RH21_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1;; (*TAIR) AT2G33730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14265679-14267880 REVERSE LENGTH=733;; (*ITAG) Solyc02g068190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32786706-32788694 transcript_region:SL2.40ch02:32786706..32788694+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** B7S8F6_9HYME); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00035002g0012.1 protein AED:0.47 eAED:0.47 QI:0|0|0.33|1|1|1|3|600|74 NbS00012904g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|225430866|ref|XP_002274784.1| (e_value=7e-40) PREDICTED: probable calcium-binding protein CML41 [Vitis vinifera];; (*SWP) sp|Q8L3R2|CML41_ARATH (e_value=2e-35) Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2;; (*TAIR) AT3G50770.1 (e_value=1e-36) | Symbols: CML41 | calmodulin-like 41 | chr3:18873987-18874604 FORWARD LENGTH=205;; (*ITAG) Solyc03g044900.2.1 (e_value=1e-62) genomic_reference:SL2.40ch03 gene_region:14746177-14747185 transcript_region:SL2.40ch03:14746177..14747185- go_terms:GO:0005509 functional_description:"Calmodulin-like protein 41 (AHRD V1 ***- B6T5H7_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbC26027233g0001.1 protein AED:0.20 eAED:0.65 QI:0|0|0|1|0|0|2|0|186; (*GB) gi|378747581|gb|AFC36404.1| (e_value=2e-37) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=2e-22) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=1e-23) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc00g164680.1.1 (e_value=4e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:17843143-17845746 transcript_region:SL2.40ch00:17843143..17845746+ go_terms:GO:0016020,GO:0009073 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0009073 NbC24432160g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|224141215|ref|XP_002323970.1| (e_value=3e-84) predicted protein [Populus trichocarpa];; (*SWP) sp|O57683|SF3B1_XENLA (e_value=6e-79) Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1;; (*TAIR) AT5G64270.1 (e_value=5e-85) | Symbols: | splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269;; (*ITAG) Solyc10g081070.1.1 (e_value=2e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61569038-61571150 transcript_region:SL2.40ch10:61569038..61571150+ go_terms:GO:0005488 functional_description:"Splicing factor 3B subunit 1 (AHRD V1 **-- D0N488_PHYIN); contains Interpro domain(s) IPR015016 Splicing factor 3B subunit 1 "; GO:0005488 NbS00022091g0008.1 protein AED:0.42 eAED:0.64 QI:44|1|0|1|1|0.5|2|0|71; (*GB) gi|296090512|emb|CBI40843.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C778|ELP4_ARATH (e_value=7e-17) Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1;; (*TAIR) AT3G11220.2 (e_value=5e-18) | Symbols: ELO1 | Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=373;; (*ITAG) Solyc11g010950.1.1 (e_value=6e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3999243-4002830 transcript_region:SL2.40ch11:3999243..4002830+ go_terms:GO:0033588 functional_description:"Elongator complex protein 4 (AHRD V1 ***- ELP4_BOVIN); contains Interpro domain(s) IPR008728 Elongator complex protein 4 "; GO:0033588 NbS00022091g0009.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0|1|0.5|0.66|3|0|191; (*GB) gi|224138226|ref|XP_002322761.1| (e_value=1e-63) cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=4e-64) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37970.1 (e_value=1e-51) | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrogenase 6 | chr4:17849672-17852145 FORWARD LENGTH=363;; (*ITAG) Solyc11g011340.1.1 (e_value=2e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00022091g0010.1 protein AED:0.75 eAED:0.75 QI:0|0|0.5|0.5|0|0|2|44|70 NbS00001949g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|224091967|ref|XP_002309420.1| (e_value=7e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|P82266|K125_ARATH (e_value=2e-28) Probable 125 kDa kinesin-related protein OS=Arabidopsis thaliana GN=At2g36200 PE=2 SV=2;; (*TAIR) AT2G36200.1 (e_value=1e-29) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00031464g0010.1 protein AED:0.20 eAED:0.20 QI:806|0|0.5|0.5|0|0.5|2|0|113; (*GB) gi|225451521|ref|XP_002272852.1| (e_value=3e-32) PREDICTED: glutaredoxin-C1 [Vitis vinifera];; (*SWP) sp|Q96305|GRXC7_ARATH (e_value=2e-20) Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2;; (*TAIR) AT3G02000.1 (e_value=2e-21) | Symbols: ROXY1 | Thioredoxin superfamily protein | chr3:332512-332922 REVERSE LENGTH=136;; (*ITAG) Solyc05g015910.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:12973179-12973574 transcript_region:SL2.40ch05:12973179..12973574+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9GZC7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00031464g0008.1 protein AED:0.25 eAED:0.25 QI:24|0.5|0.2|1|0.75|0.6|5|0|502; (*GB) gi|147820254|emb|CAN71473.1| (e_value=1e-162) hypothetical protein VITISV_038615 [Vitis vinifera];; (*SWP) sp|Q9NQG5|RPR1B_HUMAN (e_value=3e-14) Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1;; (*TAIR) AT3G26990.1 (e_value=2e-110) | Symbols: | ENTH/VHS family protein | chr3:9948426-9951557 REVERSE LENGTH=513;; (*ITAG) Solyc02g094360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49482614-49491867 transcript_region:SL2.40ch02:49482614..49491867- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00036888g0101.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|81 NbS00027919g0003.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|0.66|1|1|3|0|180; (*GB) gi|296088210|emb|CBI35725.3| (e_value=3e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G65540.1 (e_value=3e-46) | Symbols: | unknown protein; Has 6825 Blast hits to 3811 proteins in 289 species: Archae - 0; Bacteria - 184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes - 2874 (source: NCBI BLink). | chr5:26195710-26198112 FORWARD LENGTH=605;; (*ITAG) Solyc05g051370.2.1 (e_value=2e-59) genomic_reference:SL2.40ch05 gene_region:60779163-60786323 transcript_region:SL2.40ch05:60779163..60786323- functional_description:"Genomic DNA chromosome 5 TAC clone K21L13 (AHRD V1 ***- Q9LSM1_ARATH)"; NbS00010167g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|277; (*GB) gi|350539876|ref|NP_001233792.1| (e_value=4e-110) TCP transcription factor 5 [Solanum lycopersicum];; (*SWP) sp|Q9S7W5|TCP13_ARATH (e_value=3e-43) Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1;; (*TAIR) AT3G02150.2 (e_value=2e-44) | Symbols: PTF1, TFPD | plastid transcription factor 1 | chr3:391522-392589 FORWARD LENGTH=355;; (*ITAG) Solyc02g089020.1.1 (e_value=7e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45506185-45507039 transcript_region:SL2.40ch02:45506185..45507039+ functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK40_9ASPA); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00010167g0005.1 protein AED:0.19 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|224080165|ref|XP_002306039.1| (e_value=9e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08060.1 (e_value=2e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2580588-2580983 FORWARD LENGTH=131;; (*ITAG) Solyc02g088930.2.1 (e_value=1e-63) genomic_reference:SL2.40ch02 gene_region:45429155-45433888 transcript_region:SL2.40ch02:45429155..45433888+ functional_description:"Upf2 (AHRD V1 ***- A1YQZ3_VOLCA)"; NbS00010167g0007.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.2|1|1|5|0|282 NbS00010167g0015.1 protein AED:0.17 eAED:0.20 QI:0|0.2|0.16|1|0.6|0.5|6|0|955; (*GB) gi|297734070|emb|CBI15317.3| (e_value=2e-99) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G74160.1 (e_value=1e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). | chr1:27887164-27891151 FORWARD LENGTH=1025;; (*ITAG) Solyc02g089050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00010167g0012.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|91; (*ITAG) Solyc00g013190.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10692250-10692603 transcript_region:SL2.40ch00:10692250..10692603- functional_description:"Unknown Protein (AHRD V1)"; NbS00025306g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|225457036|ref|XP_002282787.1| (e_value=6e-71) PREDICTED: uncharacterized protein LOC100243388 [Vitis vinifera];; (*TAIR) AT1G23710.1 (e_value=1e-27) | Symbols: | Protein of unknown function (DUF1645) | chr1:8385363-8386250 FORWARD LENGTH=295;; (*ITAG) Solyc03g114350.1.1 (e_value=4e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:58408606-58409475 transcript_region:SL2.40ch03:58408606..58409475+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00008319g0008.1 protein AED:0.06 eAED:0.06 QI:163|0.93|0.93|1|0.86|0.81|16|433|537; (*GB) gi|255561012|ref|XP_002521518.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q2HJ56|PWP1_BOVIN (e_value=6e-72) Periodic tryptophan protein 1 homolog OS=Bos taurus GN=PWP1 PE=2 SV=1;; (*TAIR) AT4G18905.1 (e_value=1e-163) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:10360234-10362991 FORWARD LENGTH=494;; (*ITAG) Solyc04g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:241155-247975 transcript_region:SL2.40ch04:241155..247975- go_terms:GO:0005515 functional_description:"Periodic tryptophan protein 1 homolog (AHRD V1 **-- C1BVG9_9MAXI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00008319g0001.1 protein AED:0.34 eAED:0.37 QI:191|0.77|0.7|1|1|1|10|0|364; (*GB) gi|255585275|ref|XP_002533337.1| (e_value=1e-160) serine/threonine-protein kinase rio2, putative [Ricinus communis];; (*SWP) sp|Q54T05|RIO2_DICDI (e_value=9e-91) Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1;; (*TAIR) AT3G51270.2 (e_value=7e-147) | Symbols: | protein serine/threonine kinases;ATP binding;catalytics | chr3:19033851-19036772 FORWARD LENGTH=458;; (*ITAG) Solyc01g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1663684-1668757 transcript_region:SL2.40ch01:1663684..1668757- go_terms:GO:0004672,GO:0005487 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U6C8_ASPOR); contains Interpro domain(s) IPR000687 RIO kinase "; GO:0004672,GO:0005487 NbS00008319g0011.1 protein AED:0.31 eAED:0.57 QI:0|0|0|1|0|0|3|0|177; (*GB) gi|321150024|gb|ADW66159.1| (e_value=4e-14) pistil-specific extensin-like protein [Solanum nigrum];; (*ITAG) Solyc02g078040.2.1 (e_value=5e-15) genomic_reference:SL2.40ch02 gene_region:37435419-37436560 transcript_region:SL2.40ch02:37435419..37436560- go_terms:GO:0005199 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00017106g0004.1 protein AED:0.28 eAED:0.28 QI:254|1|0.92|1|1|1|14|570|479; (*GB) gi|255583653|ref|XP_002532581.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q2V452|CIPK3_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2;; (*TAIR) AT2G26980.3 (e_value=0.0) | Symbols: CIPK3 | CBL-interacting protein kinase 3 | chr2:11515234-11518205 REVERSE LENGTH=441;; (*ITAG) Solyc01g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2877780-2883889 transcript_region:SL2.40ch01:2877780..2883889+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 18 (AHRD V1 ***- C4P7W7_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00017106g0005.1 protein AED:0.39 eAED:0.49 QI:0|0|0|1|0|0|3|0|105; (*GB) gi|290489068|gb|ADD30918.1| (e_value=1e-22) putative RF1 protein [Heuchera sanguinea];; (*SWP) sp|A6MM95|YCF1_BUXMI (e_value=3e-23) Putative membrane protein ycf1 OS=Buxus microphylla GN=ycf1-A PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=2e-23) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g044670.1.1 (e_value=4e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36006191-36006790 transcript_region:SL2.40ch11:36006191..36006790+ functional_description:"Ycf1 (Fragment) (AHRD V1 ***- A6Y9X6_HAMJA); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00015000g0010.1 protein AED:0.19 eAED:0.19 QI:285|0.66|0.75|1|1|1|4|270|164; (*GB) gi|224064434|ref|XP_002301474.1| (e_value=1e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BPY9|FIGL1_MOUSE (e_value=3e-20) Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1;; (*TAIR) AT4G02480.1 (e_value=3e-80) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc06g084530.2.1 (e_value=1e-92) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00015000g0015.1 protein AED:0.29 eAED:0.29 QI:428|0.66|0.75|0.75|1|1|4|0|151; (*GB) gi|359480262|ref|XP_002265742.2| (e_value=5e-71) PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera];; (*TAIR) AT2G47710.1 (e_value=7e-65) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc06g084540.2.1 (e_value=8e-80) genomic_reference:SL2.40ch06 gene_region:45921673-45922823 transcript_region:SL2.40ch06:45921673..45922823+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00015000g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.18|0.08|0.25|0.90|0.91|12|0|444; (*GB) gi|224131154|ref|XP_002321014.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q505J9|ATAD1_RAT (e_value=2e-62) ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=1 SV=1;; (*TAIR) AT4G02480.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc06g084530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00015000g0012.1 protein AED:0.18 eAED:0.27 QI:71|0.7|0.45|1|0.5|0.36|11|0|353; (*GB) gi|297743881|emb|CBI36851.3| (e_value=3e-152) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3J3|HIUH_SOYBN (e_value=5e-119) Hydroxyisourate hydrolase OS=Glycine max GN=HIUH PE=1 SV=1;; (*TAIR) AT1G02850.2 (e_value=2e-126) | Symbols: BGLU11 | beta glucosidase 11 | chr1:630569-633085 FORWARD LENGTH=497;; (*ITAG) Solyc09g075060.2.1 (e_value=5e-166) genomic_reference:SL2.40ch09 gene_region:62378413-62381481 transcript_region:SL2.40ch09:62378413..62381481- go_terms:GO:0004338 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00016351g0002.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|262; (*GB) gi|359491319|ref|XP_002281821.2| (e_value=2e-105) PREDICTED: putative pentatricopeptide repeat-containing protein At1g74400-like [Vitis vinifera];; (*SWP) sp|Q9CA73|PP119_ARATH (e_value=1e-62) Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1;; (*TAIR) AT1G74400.1 (e_value=1e-63) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:27963953-27965341 FORWARD LENGTH=462;; (*ITAG) Solyc03g115800.1.1 (e_value=7e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59447518-59448798 transcript_region:SL2.40ch03:59447518..59448798+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00038916g0005.1 protein AED:0.13 eAED:0.15 QI:163|0.25|0.4|1|1|1|5|0|323; (*GB) gi|429114|emb|CAA50561.1| (e_value=0.0) catechol O-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q43609|COMT1_PRUDU (e_value=1e-114) Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1;; (*TAIR) AT5G54160.1 (e_value=4e-108) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc10g005060.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:53330-56283 transcript_region:SL2.40ch10:53330..56283- go_terms:GO:0030755,GO:0033799 functional_description:"O-methyltransferase-like protein (AHRD V1 **** D3JZ18_PRUMU); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0030755,GO:0033799 NbS00003062g0002.1 protein AED:0.09 eAED:0.71 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|255540541|ref|XP_002511335.1| (e_value=3e-115) hypothetical protein RCOM_1509330 [Ricinus communis];; (*TAIR) AT3G26600.1 (e_value=4e-85) | Symbols: ARO4 | armadillo repeat only 4 | chr3:9769889-9771736 FORWARD LENGTH=615;; (*ITAG) Solyc02g083820.1.1 (e_value=3e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00021910g0001.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0.4|1|1|1|5|0|273; (*GB) gi|147778659|emb|CAN71719.1| (e_value=3e-58) hypothetical protein VITISV_034106 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-29) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G40240.1 (e_value=1e-37) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:16082325-16084466 REVERSE LENGTH=368;; (*ITAG) Solyc02g087050.2.1 (e_value=2e-109) genomic_reference:SL2.40ch02 gene_region:44163113-44166397 transcript_region:SL2.40ch02:44163113..44166397+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7MJA5_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00006712g0012.1 protein AED:0.00 eAED:0.00 QI:494|1|1|1|1|1|2|155|573; (*GB) gi|255564699|ref|XP_002523344.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=1e-60) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc05g050590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59890165-59893304 transcript_region:SL2.40ch05:59890165..59893304- go_terms:GO:0043008 functional_description:"Phosphatidylinositol 3-and 4-kinase family (Fragment) (AHRD V1 *--- A6N0X2_ORYSI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00006712g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|224130552|ref|XP_002320869.1| (e_value=3e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39056|CNX3_ARATH (e_value=3e-85) Molybdopterin biosynthesis protein CNX3 OS=Arabidopsis thaliana GN=CNX3 PE=2 SV=1;; (*TAIR) AT1G01290.2 (e_value=2e-86) | Symbols: CNX3 | cofactor of nitrate reductase and xanthine dehydrogenase 3 | chr1:114299-115296 FORWARD LENGTH=270;; (*ITAG) Solyc05g050570.2.1 (e_value=4e-133) genomic_reference:SL2.40ch05 gene_region:59878017-59880463 transcript_region:SL2.40ch05:59878017..59880463+ go_terms:GO:0005515,GO:0003824 functional_description:"Molybdenum cofactor biosynthesis protein C (AHRD V1 ***- D0MEL5_RHOM4); contains Interpro domain(s) IPR002820 Molybdopterin cofactor biosynthesis MoaC region "; GO:0005515,GO:0003824 NbS00006712g0014.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|334; (*GB) gi|379055945|emb|CCG06554.1| (e_value=0.0) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc05g050580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59884633-59889227 transcript_region:SL2.40ch05:59884633..59889227+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00006712g0017.1 protein AED:0.50 eAED:0.51 QI:0|0|0|1|0|0|3|0|250; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-66) hypothetical protein [Nicotiana tabacum]; NbS00010903g0021.1 protein AED:0.06 eAED:0.06 QI:207|1|1|1|0.5|0.66|3|422|133; (*GB) gi|255563754|ref|XP_002522878.1| (e_value=2e-46) acyl carrier protein, putative [Ricinus communis];; (*SWP) sp|Q9FGJ4|ACPM3_ARATH (e_value=1e-39) Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1;; (*TAIR) AT5G47630.2 (e_value=9e-41) | Symbols: mtACP3 | mitochondrial acyl carrier protein 3 | chr5:19306397-19306885 FORWARD LENGTH=131;; (*ITAG) Solyc11g012180.1.1 (e_value=6e-75) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5103016-5103878 transcript_region:SL2.40ch11:5103016..5103878- go_terms:GO:0006633,GO:0000036,GO:0048037 functional_description:"Acyl carrier protein (AHRD V1 ***- B9SA59_RICCO); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0000036,GO:0048037 NbS00010903g0004.1 protein AED:0.05 eAED:0.07 QI:67|0.36|0.66|0.91|1|1|12|262|564; (*GB) gi|224089605|ref|XP_002308775.1| (e_value=2e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU25|T2FA_ARATH (e_value=3e-98) Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1;; (*TAIR) AT4G12610.2 (e_value=5e-67) | Symbols: RAP74, ATRAP74 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | chr4:7455565-7458318 FORWARD LENGTH=506;; (*ITAG) Solyc11g012150.1.1 (e_value=1e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5083236-5090295 transcript_region:SL2.40ch11:5083236..5090295- go_terms:GO:0005634,GO:0006367 functional_description:"Transcription initiation factor IIF alpha subunit (AHRD V1 ***- B6T7E5_MAIZE); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit "; GO:0005634,GO:0006367 NbS00010903g0030.1 protein AED:0.12 eAED:0.12 QI:0|0.86|0.75|1|0.8|0.75|16|0|790; (*GB) gi|225433841|ref|XP_002263182.1| (e_value=0.0) PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q54YD4|SYIC_DICDI (e_value=0.0) Probable isoleucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=ileS PE=3 SV=1;; (*TAIR) AT4G10320.1 (e_value=0.0) | Symbols: | tRNA synthetase class I (I, L, M and V) family protein | chr4:6397526-6404509 REVERSE LENGTH=1190;; (*ITAG) Solyc11g012140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5060237-5076822 transcript_region:SL2.40ch11:5060237..5076822- go_terms:GO:0005737 functional_description:"Isoleucyl-tRNA synthetase (AHRD V1 ***- Q6PGU7_DANRE); contains Interpro domain(s) IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR002301 Isoleucyl-tRNA synthetase, class Ia IPR018353 Isoleucyl-tRNA synthetase "; GO:0005737 NbS00010903g0025.1 protein AED:0.06 eAED:0.06 QI:38|1|1|1|1|1|5|306|452; (*GB) gi|359495552|ref|XP_003635019.1| (e_value=0.0) PREDICTED: mannan endo-1,4-beta-mannosidase 6-like [Vitis vinifera];; (*SWP) sp|Q0DCM5|MAN6_ORYSJ (e_value=2e-151) Mannan endo-1,4-beta-mannosidase 6 OS=Oryza sativa subsp. japonica GN=MAN6 PE=2 SV=2;; (*TAIR) AT4G28320.1 (e_value=4e-144) | Symbols: MAN5, AtMAN5 | Glycosyl hydrolase superfamily protein | chr4:14018293-14019972 REVERSE LENGTH=431;; (*ITAG) Solyc11g012190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5108252-5112002 transcript_region:SL2.40ch11:5108252..5112002+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00010903g0026.1 protein AED:0.21 eAED:0.21 QI:145|1|1|1|1|1|14|252|420; (*GB) gi|224086373|ref|XP_002307870.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A5PKH3|FAAA_BOVIN (e_value=0.0) Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1;; (*TAIR) AT1G12050.1 (e_value=0.0) | Symbols: | fumarylacetoacetase, putative | chr1:4072904-4075856 FORWARD LENGTH=421;; (*ITAG) Solyc11g012160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5093400-5099036 transcript_region:SL2.40ch11:5093400..5099036+ go_terms:GO:0008152,GO:0009072 functional_description:"Fumarylacetoacetase (AHRD V1 ***- Q2HT34_MEDTR); contains Interpro domain(s) IPR005959 Fumarylacetoacetase "; GO:0008152,GO:0009072 NbS00010903g0006.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|27529836|dbj|BAC53933.1| (e_value=3e-30) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT2G42320.2 (e_value=9e-18) | Symbols: | nucleolar protein gar2-related | chr2:17628102-17630657 FORWARD LENGTH=669;; (*ITAG) Solyc03g051790.2.1 (e_value=1e-32) genomic_reference:SL2.40ch03 gene_region:18795546-18800624 transcript_region:SL2.40ch03:18795546..18800624+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00010903g0032.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0|0|2|0|182; (*GB) gi|225469956|ref|XP_002275440.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100263809 [Vitis vinifera];; (*TAIR) AT2G40113.1 (e_value=6e-22) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:16750254-16750906 FORWARD LENGTH=169;; (*ITAG) Solyc11g012170.1.1 (e_value=1e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5100692-5102479 transcript_region:SL2.40ch11:5100692..5102479+ functional_description:"Unknown Protein (AHRD V1)"; NbC24224736g0001.1 protein AED:0.00 eAED:0.23 QI:45|1|0.5|1|0|0|2|61|29 NbS00001245g0014.1 protein AED:0.20 eAED:0.27 QI:0|0|0|1|0.25|0.4|5|0|399; (*GB) gi|364285545|gb|AEW48190.1| (e_value=6e-59) disease resistance protein RX4 [Solanum albicans];; (*SWP) sp|Q6L3X3|R1B8_SOLDE (e_value=1e-23) Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1;; (*TAIR) AT3G46730.1 (e_value=1e-16) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc12g009450.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00001245g0006.1 protein AED:0.46 eAED:0.62 QI:0|0|0|1|1|1|2|0|71 NbS00001245g0015.1 protein AED:0.25 eAED:0.25 QI:154|1|1|1|0.75|1|9|329|597; (*GB) gi|225461279|ref|XP_002284299.1| (e_value=0.0) PREDICTED: tRNA (guanine-N(1)-)-methyltransferase-like [Vitis vinifera];; (*SWP) sp|F6H2F8|TRM51_VITVI (e_value=0.0) tRNA (guanine(37)-N1)-methyltransferase 1 OS=Vitis vinifera GN=VIT_19s0014g03930 PE=3 SV=1;; (*TAIR) AT4G27340.1 (e_value=0.0) | Symbols: | Met-10+ like family protein | chr4:13687366-13690370 REVERSE LENGTH=619;; (*ITAG) Solyc12g005280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:172117-176430 transcript_region:SL2.40ch12:172117..176430+ functional_description:"tRNA-methyltransferase (AHRD V1 *-*- Q54WD6_DICDI); contains Interpro domain(s) IPR003402 Protein of unknown function Met10 "; NbS00011021g0013.1 protein AED:0.14 eAED:0.14 QI:274|0.93|0.93|1|0.93|0.87|16|482|717; (*GB) gi|350539809|ref|NP_001234534.1| (e_value=0.0) auxin response factor 9 [Solanum lycopersicum];; (*SWP) sp|Q9XED8|ARFI_ARATH (e_value=0.0) Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1;; (*TAIR) AT4G23980.1 (e_value=0.0) | Symbols: ARF9 | auxin response factor 9 | chr4:12451592-12454737 FORWARD LENGTH=638;; (*ITAG) Solyc08g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62527536-62531812 transcript_region:SL2.40ch08:62527536..62531812+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 **** D7R605_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00011021g0009.1 protein AED:0.07 eAED:0.08 QI:196|0.83|0.76|1|0.91|0.84|13|1682|592; (*GB) gi|225436170|ref|XP_002266075.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FtsH [Vitis vinifera];; (*SWP) sp|Q10ZF7|FTSH_TRIEI (e_value=2e-30) ATP-dependent zinc metalloprotease FtsH OS=Trichodesmium erythraeum (strain IMS101) GN=ftsH PE=3 SV=1;; (*TAIR) AT4G23940.1 (e_value=0.0) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00011021g0002.1 protein AED:0.10 eAED:0.10 QI:304|0.33|0.75|1|0.33|1|4|583|466; (*GB) gi|225426292|ref|XP_002265286.1| (e_value=3e-156) PREDICTED: uncharacterized protein LOC100259778 [Vitis vinifera];; (*SWP) sp|O59729|SLPI_SCHPO (e_value=1e-35) Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slp1 PE=2 SV=1;; (*TAIR) AT4G23950.1 (e_value=4e-103) | Symbols: | Galactose-binding protein | chr4:12442297-12444330 FORWARD LENGTH=561;; (*ITAG) Solyc08g082540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62459474-62464300 transcript_region:SL2.40ch08:62459474..62464300+ functional_description:"Sad1/UNC domain protein (AHRD V1 *--- D4DCK4_TRIVH); contains Interpro domain(s) IPR012919 Sad1/UNC-like, C-terminal "; NbS00018511g0004.1 protein AED:0.03 eAED:0.03 QI:152|1|1|1|0.25|0.2|5|139|338; (*GB) gi|29825611|gb|AAO92303.1| (e_value=0.0) gibberellin 2-oxidase 1 [Nicotiana sylvestris];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=3e-152) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.1 (e_value=2e-153) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11306601 FORWARD LENGTH=338;; (*ITAG) Solyc02g080120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39009892-39014517 transcript_region:SL2.40ch02:39009892..39014517+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00045519g0007.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|0|0|2|0|457; (*GB) gi|255575900|ref|XP_002528847.1| (e_value=2e-138) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=3e-63) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT4G26890.1 (e_value=2e-75) | Symbols: MAPKKK16 | mitogen-activated protein kinase kinase kinase 16 | chr4:13512072-13513406 FORWARD LENGTH=444;; (*ITAG) Solyc01g103240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83654054-83655666 transcript_region:SL2.40ch01:83654054..83655666+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006945g0003.1 protein AED:0.22 eAED:0.28 QI:0|0|0|1|1|1|2|0|147; (*GB) gi|255553189|ref|XP_002517637.1| (e_value=6e-52) GTP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LVZ8|LOR12_ARATH (e_value=1e-45) Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1;; (*TAIR) AT3G15810.1 (e_value=9e-47) | Symbols: | Protein of unknown function (DUF567) | chr3:5348054-5349178 REVERSE LENGTH=220;; (*ITAG) Solyc03g116710.2.1 (e_value=1e-68) genomic_reference:SL2.40ch03 gene_region:60053388-60054523 transcript_region:SL2.40ch03:60053388..60054523- functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00006945g0008.1 protein AED:0.36 eAED:0.36 QI:460|0.5|0.4|1|0.25|0.4|5|0|152; (*TAIR) AT5G04870.1 (e_value=1e-14) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc11g006370.1.1 (e_value=3e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1080169-1085490 transcript_region:SL2.40ch11:1080169..1085490+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q93YF3_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00022994g0010.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|0|0|3|0|189; (*GB) gi|225456445|ref|XP_002280714.1| (e_value=6e-49) PREDICTED: UPF0497 membrane protein 8 [Vitis vinifera];; (*SWP) sp|A7PHN8|CSPL4_VITVI (e_value=5e-50) CASP-like protein VIT_17s0000g00560 OS=Vitis vinifera GN=VIT_17s0000g00560 PE=2 SV=2;; (*TAIR) AT4G25040.1 (e_value=2e-20) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:12868320-12869319 FORWARD LENGTH=170;; (*ITAG) Solyc06g072550.2.1 (e_value=2e-75) genomic_reference:SL2.40ch06 gene_region:41136237-41138675 transcript_region:SL2.40ch06:41136237..41138675- functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00022994g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.33|1|1|0.83|6|0|183; (*GB) gi|224053535|ref|XP_002297861.1| (e_value=1e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|P52904|ODPB_PEA (e_value=6e-111) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G50850.1 (e_value=8e-112) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc03g097680.2.1 (e_value=2e-123) genomic_reference:SL2.40ch03 gene_region:53455935-53462816 transcript_region:SL2.40ch03:53455935..53462816+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00022694g0011.1 protein AED:0.01 eAED:0.01 QI:69|1|1|1|1|1|6|194|276; (*GB) gi|224118802|ref|XP_002317910.1| (e_value=3e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWK7|BEE3_ARATH (e_value=1e-56) Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1;; (*TAIR) AT1G73830.1 (e_value=9e-58) | Symbols: BEE3 | BR enhanced expression 3 | chr1:27760027-27761346 FORWARD LENGTH=261;; (*ITAG) Solyc03g119390.2.1 (e_value=1e-108) genomic_reference:SL2.40ch03 gene_region:62067629-62069260 transcript_region:SL2.40ch03:62067629..62069260+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00022694g0015.1 protein AED:0.41 eAED:0.42 QI:0|0.2|0.16|1|0.8|0.66|6|0|173; (*GB) gi|297738451|emb|CBI27652.3| (e_value=1e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67370.1 (e_value=1e-25) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=7e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00022694g0014.1 protein AED:0.41 eAED:0.43 QI:0|0.14|0|0.87|0.28|0.37|8|0|229; (*GB) gi|225425426|ref|XP_002271582.1| (e_value=5e-94) PREDICTED: uncharacterized protein LOC100267642 [Vitis vinifera];; (*TAIR) AT1G67370.1 (e_value=4e-82) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=7e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00022694g0019.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0.5|0.66|3|0|810; (*GB) gi|297736093|emb|CBI24131.3| (e_value=2e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y5Q9|TF3C3_HUMAN (e_value=9e-26) General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1;; (*TAIR) AT1G17680.2 (e_value=5e-122) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr1:6076388-6082160 FORWARD LENGTH=896;; (*ITAG) Solyc06g063420.2.1 (e_value=9e-141) genomic_reference:SL2.40ch06 gene_region:36475902-36493708 transcript_region:SL2.40ch06:36475902..36493708- go_terms:GO:0005488 functional_description:"Tfc4p like TFIIIC subunit TPR repeat containing basal transcription factor (AHRD V1 *--- Q5CRV9_CRYPV); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022694g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.5|1|1|1|4|322|346; (*GB) gi|294847482|gb|ADF43752.1| (e_value=2e-85) MYB [Camellia sinensis];; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=3e-56) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT1G68320.1 (e_value=5e-73) | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286;; (*ITAG) Solyc03g119370.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62052377-62053490 transcript_region:SL2.40ch03:62052377..62053490- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9C9G7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00040306g0005.1 protein AED:0.09 eAED:0.09 QI:271|1|1|1|0.8|1|6|407|375; (*GB) gi|297743097|emb|CBI35964.3| (e_value=2e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=2e-52) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT1G17640.1 (e_value=2e-73) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:6067394-6069098 REVERSE LENGTH=369;; (*ITAG) Solyc03g121710.2.1 (e_value=8e-118) genomic_reference:SL2.40ch03 gene_region:63844015-63848152 transcript_region:SL2.40ch03:63844015..63848152+ go_terms:GO:0043047 functional_description:"RNA-binding motif, single-stranded-interacting protein 1 (AHRD V1 *--* RBMS1_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0043047 NbS00040306g0008.1 protein AED:0.18 eAED:0.16 QI:144|1|0.85|1|0.66|0.42|7|1262|257; (*GB) gi|350538543|ref|NP_001233836.1| (e_value=1e-105) succinic semialdehyde reductase isofom2 [Solanum lycopersicum];; (*SWP) sp|Q5ZLS7|GLYR1_CHICK (e_value=1e-34) Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1;; (*TAIR) AT1G17650.1 (e_value=6e-73) | Symbols: GLYR2, GR2 | glyoxylate reductase 2 | chr1:6069594-6071964 REVERSE LENGTH=358;; (*ITAG) Solyc03g121720.2.1 (e_value=8e-108) genomic_reference:SL2.40ch03 gene_region:63848472-63854092 transcript_region:SL2.40ch03:63848472..63854092+ go_terms:GO:0003858,GO:0030267 functional_description:"2-hydroxy-3-oxopropionate reductase (AHRD V1 **-* B6T4X5_MAIZE); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0003858,GO:0030267 NbS00003692g0004.1 protein AED:0.00 eAED:0.00 QI:65|0|0.5|1|0|0.5|2|558|196; (*ITAG) Solyc06g062460.2.1 (e_value=1e-47) genomic_reference:SL2.40ch06 gene_region:35797457-35799604 transcript_region:SL2.40ch06:35797457..35799604- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *--* Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00003692g0005.1 protein AED:0.34 eAED:0.57 QI:0|0|0|1|1|1|2|0|105; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-17) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094740.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015708g0012.1 protein AED:0.14 eAED:0.15 QI:12|0.75|0.55|1|1|1|9|0|500; (*GB) gi|224139052|ref|XP_002322968.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P49972|SR542_SOLLC (e_value=0.0) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.1 (e_value=0.0) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc03g116810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00015708g0014.1 protein AED:0.25 eAED:0.30 QI:36|0.8|0.66|0.83|0.8|0.83|6|0|218; (*GB) gi|359482375|ref|XP_002265060.2| (e_value=3e-77) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|B8HLD2|DNAJ_CYAP4 (e_value=5e-34) Chaperone protein DnaJ OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dnaJ PE=3 SV=1;; (*TAIR) AT1G80030.2 (e_value=5e-65) | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr1:30105398-30108873 REVERSE LENGTH=500;; (*ITAG) Solyc03g116790.2.1 (e_value=4e-101) genomic_reference:SL2.40ch03 gene_region:60114726-60125680 transcript_region:SL2.40ch03:60114726..60125680+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00015708g0013.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0|2|0|148; (*GB) gi|297834464|ref|XP_002885114.1| (e_value=7e-23) hypothetical protein ARALYDRAFT_479046 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G15900.1 (e_value=7e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5376356-5376972 REVERSE LENGTH=141;; (*ITAG) Solyc03g116800.2.1 (e_value=1e-61) genomic_reference:SL2.40ch03 gene_region:60125950-60126725 transcript_region:SL2.40ch03:60125950..60126725- functional_description:"Unknown Protein (AHRD V1)"; NbS00018874g0017.1 protein AED:0.18 eAED:0.25 QI:0|0.2|0|0.83|0.6|0.33|6|0|252; (*GB) gi|356518681|ref|XP_003528007.1| (e_value=3e-85) PREDICTED: pathogenesis-related protein 5-like [Glycine max];; (*SWP) sp|Q9FSG7|TP1A_MALDO (e_value=7e-51) Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1;; (*TAIR) AT5G24620.1 (e_value=3e-71) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:8430918-8432289 FORWARD LENGTH=420;; (*ITAG) Solyc03g079960.2.1 (e_value=2e-117) genomic_reference:SL2.40ch03 gene_region:45416271-45417505 transcript_region:SL2.40ch03:45416271..45417505- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9FLU2_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00018874g0015.1 protein AED:0.32 eAED:0.32 QI:0|0.88|0.8|0.9|0.77|0.7|10|0|351; (*GB) gi|302144008|emb|CBI23113.3| (e_value=1e-153) unnamed protein product [Vitis vinifera];; (*SWP) sp|P73625|MUTS2_SYNY3 (e_value=2e-69) MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutSB PE=3 SV=1;; (*TAIR) AT5G54090.1 (e_value=3e-129) | Symbols: | DNA mismatch repair protein MutS, type 2 | chr5:21948283-21952550 REVERSE LENGTH=796;; (*ITAG) Solyc03g080010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45443458-45457735 transcript_region:SL2.40ch03:45443458..45457735- go_terms:GO:0003677,GO:0003824 functional_description:"MutS2 protein (AHRD V1 ***- B0JH18_MICAN); contains Interpro domain(s) IPR005747 DNA mismatch repair protein MutS, type 2 "; GO:0003677,GO:0003824 NbS00018874g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0|1|0.33|0.25|4|0|430; (*GB) gi|224132546|ref|XP_002321345.1| (e_value=4e-109) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24600.1 (e_value=5e-96) | Symbols: | Protein of unknown function, DUF599 | chr5:8421790-8423342 REVERSE LENGTH=248;; (*ITAG) Solyc03g079980.1.1 (e_value=8e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45436057-45436853 transcript_region:SL2.40ch03:45436057..45436853+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00018874g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.84|0.78|0.85|0.69|0.71|14|508|392; (*GB) gi|356507532|ref|XP_003522518.1| (e_value=7e-76) PREDICTED: uncharacterized protein LOC100795660 [Glycine max];; (*SWP) sp|Q9FLU1|BIN4_ARATH (e_value=2e-60) DNA-binding protein BIN4 OS=Arabidopsis thaliana GN=BIN4 PE=1 SV=2;; (*TAIR) AT5G24630.4 (e_value=1e-61) | Symbols: BIN4 | double-stranded DNA binding | chr5:8432523-8435682 REVERSE LENGTH=450;; (*ITAG) Solyc03g079950.2.1 (e_value=5e-155) genomic_reference:SL2.40ch03 gene_region:45408629-45415871 transcript_region:SL2.40ch03:45408629..45415871+ functional_description:"DNA-binding protein BIN4 (AHRD V1 *-*- BIN4_ARATH)"; NbS00007047g0006.1 protein AED:0.16 eAED:0.16 QI:390|0.5|0.33|1|0|0|3|0|698; (*GB) gi|356516025|ref|XP_003526697.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100814722 [Glycine max];; (*SWP) sp|Q9QYI4|DJB12_MOUSE (e_value=1e-13) DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2;; (*TAIR) AT5G53150.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726;; (*ITAG) Solyc03g019640.1.1 (e_value=6e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:6600822-6607135 transcript_region:SL2.40ch03:6600822..6607135- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6JZX2_SCHJY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00007047g0120.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|0.87|8|158|338 NbS00007047g0121.1 protein AED:0.22 eAED:0.23 QI:163|1|0.66|1|0.5|0.66|3|0|185 NbS00007047g0122.1 protein AED:0.33 eAED:0.33 QI:1121|0.75|0.8|1|0.87|0.84|25|341|1148 NbS00007047g0131.1 protein AED:0.11 eAED:0.14 QI:0|0.25|0|1|0.25|0.4|5|0|277 NbS00007047g0107.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|90 NbS00007047g0115.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|105 NbS00033773g0001.1 protein AED:0.00 eAED:0.00 QI:274|1|0.5|1|0|0.5|2|0|183; (*GB) gi|225452536|ref|XP_002279925.1| (e_value=1e-111) PREDICTED: uncharacterized protein LOC100249281 isoform 1 [Vitis vinifera];; (*TAIR) AT5G40190.1 (e_value=2e-88) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr5:16069298-16069849 REVERSE LENGTH=183;; (*ITAG) Solyc02g081950.2.1 (e_value=3e-126) genomic_reference:SL2.40ch02 gene_region:40287312-40288823 transcript_region:SL2.40ch02:40287312..40288823+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7MJB3_ARALY); contains Interpro domain(s) IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase "; GO:0005516 NbS00033773g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.91|0.92|1|0.83|0.76|13|513|660; (*GB) gi|297738038|emb|CBI27239.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FYH7|VSR6_ARATH (e_value=0.0) Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3;; (*TAIR) AT1G30900.1 (e_value=0.0) | Symbols: VSR6, VSR3;3, BP80-3;3 | VACUOLAR SORTING RECEPTOR 6 | chr1:10997275-11000543 FORWARD LENGTH=631;; (*ITAG) Solyc02g081970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40296730-40302494 transcript_region:SL2.40ch02:40296730..40302494- go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor 7 (AHRD V1 **** B6UEQ5_MAIZE); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005515,GO:0009940 NbS00034898g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|10|63|315; (*GB) gi|142942524|gb|ABO93015.1| (e_value=2e-179) putative origin-recognition complex subunit 6 [Solanum tuberosum];; (*SWP) sp|Q9ZVH3|ORC6_ARATH (e_value=2e-132) Origin recognition complex subunit 6 OS=Arabidopsis thaliana GN=ORC6 PE=1 SV=2;; (*TAIR) AT1G26840.1 (e_value=1e-133) | Symbols: ORC6, ATORC6 | origin recognition complex protein 6 | chr1:9298822-9300603 FORWARD LENGTH=284;; (*ITAG) Solyc05g007450.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2024697-2027697 transcript_region:SL2.40ch05:2024697..2027697+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 6 (AHRD V1 ***- B6TX59_MAIZE); contains Interpro domain(s) IPR008721 Origin recognition complex subunit 6 "; GO:0042802 NbS00034898g0005.1 protein AED:0.35 eAED:0.35 QI:38|1|1|1|0.87|0.88|9|322|336; (*GB) gi|142942422|gb|ABO92996.1| (e_value=0.0) protein of unknown function [Solanum tuberosum];; (*SWP) sp|Q76NW7|FA203_DICDI (e_value=1e-22) FAM203 family protein DDB_G0276861 OS=Dictyostelium discoideum GN=DDB_G0276861 PE=3 SV=1;; (*TAIR) AT1G14300.1 (e_value=2e-170) | Symbols: | ARM repeat superfamily protein | chr1:4882654-4884686 REVERSE LENGTH=339;; (*ITAG) Solyc05g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2017073-2024094 transcript_region:SL2.40ch05:2017073..2024094+ go_terms:GO:0005515 functional_description:"DNA-binding protein HGH1 (AHRD V1 **-* C1GSM5_PARBA); contains Interpro domain(s) IPR007205 Uncharacterised protein family UPF0507 "; GO:0005515 NbS00057986g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|0|547; (*GB) gi|12229631|sp|O24145.1|4CL1_TOBAC (e_value=0.0) RecName: Full=4-coumarate--CoA ligase 1; Short=4CL 1; AltName: Full=4-coumaroyl-CoA synthase 1;; (*SWP) sp|O24145|4CL1_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=0.0) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc03g117870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00057986g0009.1 protein AED:0.20 eAED:0.20 QI:344|0.77|0.7|1|0.88|0.8|10|0|286; (*GB) gi|359483143|ref|XP_003632910.1| (e_value=4e-110) PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=1e-102) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.1 (e_value=1e-102) | Symbols: | uridylyltransferase-related | chr1:5773796-5776125 FORWARD LENGTH=290;; (*ITAG) Solyc03g117890.2.1 (e_value=2e-163) genomic_reference:SL2.40ch03 gene_region:60949790-60953035 transcript_region:SL2.40ch03:60949790..60953035- functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"; NbS00036007g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|224131314|ref|XP_002328508.1| (e_value=8e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT5G28150.1 (e_value=2e-103) | Symbols: | Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289;; (*ITAG) Solyc01g097790.2.1 (e_value=3e-169) genomic_reference:SL2.40ch01 gene_region:80260882-80262313 transcript_region:SL2.40ch01:80260882..80262313- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00009086g0002.1 protein AED:0.30 eAED:0.30 QI:246|1|0.9|1|0.66|0.7|10|0|257; (*GB) gi|350538713|ref|NP_001234100.1| (e_value=9e-146) tobamovirus multiplication 1 homolog 2 [Solanum lycopersicum];; (*TAIR) AT4G21790.1 (e_value=3e-103) | Symbols: TOM1, ATTOM1 | tobamovirus multiplication 1 | chr4:11569924-11572163 FORWARD LENGTH=291;; (*ITAG) Solyc01g105270.2.1 (e_value=2e-148) genomic_reference:SL2.40ch01 gene_region:85255989-85262868 transcript_region:SL2.40ch01:85255989..85262868- go_terms:GO:0005515 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515 NbS00009086g0001.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|47900691|gb|AAT39290.1| (e_value=2e-17) hypothetical protein SDM1_27t00022 [Solanum demissum];; (*ITAG) Solyc05g007520.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2083855-2084758 transcript_region:SL2.40ch05:2083855..2084758+ functional_description:"FAM65A protein related (AHRD V1 ***- Q6L3W5_SOLDE)"; NbS00009086g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|142942411|gb|ABO92986.1| (e_value=3e-16) F-box domain-containing protein [Solanum tuberosum];; (*ITAG) Solyc05g007520.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2083855-2084758 transcript_region:SL2.40ch05:2083855..2084758+ functional_description:"FAM65A protein related (AHRD V1 ***- Q6L3W5_SOLDE)"; NbS00028319g0004.1 protein AED:0.01 eAED:0.01 QI:150|1|1|1|0.5|0.6|5|501|147; (*GB) gi|82621170|gb|ABB86273.1| (e_value=1e-99) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=1e-97) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=5e-95) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00040834g0005.1 protein AED:0.06 eAED:0.06 QI:235|1|1|1|1|1|4|287|365; (*GB) gi|19851|emb|CAA78365.1| (e_value=0.0) tobacco pre-pro-cysteine proteinase [Nicotiana tabacum];; (*SWP) sp|P43296|RD19A_ARATH (e_value=0.0) Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=0.0) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc04g080960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62610006-62612431 transcript_region:SL2.40ch04:62610006..62612431+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00054428g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.73|0.66|0.87|0.91|0.83|24|677|1346; (*GB) gi|359488765|ref|XP_002281791.2| (e_value=0.0) PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera];; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=0.0) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g087360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00020528g0012.1 protein AED:0.08 eAED:0.08 QI:11|1|1|1|0.5|0.6|5|204|320; (*GB) gi|359490352|ref|XP_003634078.1| (e_value=7e-118) PREDICTED: inactive rhomboid protein 1 [Vitis vinifera];; (*TAIR) AT5G07250.1 (e_value=5e-98) | Symbols: ATRBL3, RBL3 | RHOMBOID-like protein 3 | chr5:2274437-2275935 REVERSE LENGTH=346;; (*ITAG) Solyc03g026080.2.1 (e_value=5e-148) genomic_reference:SL2.40ch03 gene_region:7887303-7889851 transcript_region:SL2.40ch03:7887303..7889851+ go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 **-- D7M0H4_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00020528g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|225455420|ref|XP_002279183.1| (e_value=9e-26) PREDICTED: putative non-specific lipid-transfer protein 14-like [Vitis vinifera];; (*SWP) sp|Q9FIT2|NLTPE_ARATH (e_value=6e-21) Putative non-specific lipid-transfer protein 14 OS=Arabidopsis thaliana GN=LTP14 PE=3 SV=2;; (*TAIR) AT5G62065.1 (e_value=4e-22) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:24929207-24929647 FORWARD LENGTH=120;; (*ITAG) Solyc03g026090.2.1 (e_value=4e-36) genomic_reference:SL2.40ch03 gene_region:7890118-7890814 transcript_region:SL2.40ch03:7890118..7890814+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** O24485_PINRA); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00020528g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|6015153|sp|Q38737.1|FIL1_ANTMA (e_value=5e-35) RecName: Full=Stamen-specific protein FIL1; Flags: Precursor;; (*SWP) sp|Q38737|FIL1_ANTMA (e_value=1e-36) Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2 SV=1;; (*TAIR) AT5G52160.1 (e_value=3e-22) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:21195140-21195430 FORWARD LENGTH=96;; (*ITAG) Solyc06g035820.1.1 (e_value=5e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21746165-21746464 transcript_region:SL2.40ch06:21746165..21746464+ go_terms:GO:0008289,GO:0005548 functional_description:"A9-like protein (Fragment) (AHRD V1 **-- A4L798_SINAL); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005548 NbS00020528g0009.1 protein AED:0.18 eAED:0.18 QI:357|0.75|0.6|1|1|1|5|0|531; (*GB) gi|255539521|ref|XP_002510825.1| (e_value=8e-59) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g026110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7899519-7903299 transcript_region:SL2.40ch03:7899519..7903299- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **** B6STZ4_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00039921g0006.1 protein AED:0.08 eAED:0.08 QI:45|1|0.75|1|1|1|4|65|329; (*GB) gi|255579771|ref|XP_002530724.1| (e_value=4e-162) Peroxidase 53 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LEH3|PER15_IPOBA (e_value=1e-158) Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1;; (*TAIR) AT5G06720.1 (e_value=8e-149) | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335;; (*ITAG) Solyc11g072920.1.1 (e_value=1e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53161025-53162350 transcript_region:SL2.40ch11:53161025..53162350- go_terms:GO:0055114 functional_description:"Peroxidase 5 (AHRD V1 ***- Q9XFL6_PHAVU); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00019099g0005.1 protein AED:0.44 eAED:0.44 QI:0|0.58|0.53|0.69|0.91|0.92|13|387|416; (*GB) gi|365222936|gb|AEW69820.1| (e_value=1e-171) Hop-interacting protein THI135 [Solanum lycopersicum];; (*SWP) sp|Q54H45|DRKB_DICDI (e_value=2e-55) Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1;; (*TAIR) AT4G35780.1 (e_value=1e-142) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc02g083290.2.1 (e_value=3e-174) genomic_reference:SL2.40ch02 gene_region:41311201-41321957 transcript_region:SL2.40ch02:41311201..41321957- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00003485g0009.1 protein AED:0.16 eAED:0.17 QI:0|1|0|1|1|1|2|242|403; (*GB) gi|350539936|ref|NP_001233815.1| (e_value=3e-162) TCP transcription factor 17 [Solanum lycopersicum];; (*SWP) sp|Q93Z00|TCP14_ARATH (e_value=2e-52) Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1;; (*TAIR) AT3G47620.1 (e_value=1e-53) | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489;; (*ITAG) Solyc06g070900.2.1 (e_value=6e-165) genomic_reference:SL2.40ch06 gene_region:39921969-39923714 transcript_region:SL2.40ch06:39921969..39923714+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00003485g0008.1 protein AED:0.41 eAED:0.41 QI:0|0|0.5|0.5|0|0.5|4|361|69 NbS00002954g0015.1 protein AED:0.11 eAED:0.11 QI:0|0.4|0.16|1|0.6|0.66|6|0|220; (*GB) gi|224060325|ref|XP_002300143.1| (e_value=5e-131) mitochondrial phosphate carrier protein [Populus trichocarpa];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=5e-77) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=1e-128) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc06g072510.2.1 (e_value=1e-140) genomic_reference:SL2.40ch06 gene_region:41107571-41109775 transcript_region:SL2.40ch06:41107571..41109775+ go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00002954g0013.1 protein AED:0.17 eAED:0.17 QI:139|0.85|0.87|1|0.85|0.75|8|151|242; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=2e-154) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=6e-156) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=5e-129) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=1e-151) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00002954g0014.1 protein AED:0.24 eAED:0.25 QI:0|0.87|0.77|1|0.62|0.55|9|398|274; (*GB) gi|224120372|ref|XP_002318313.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q86UY6|NAA40_HUMAN (e_value=2e-30) N-alpha-acetyltransferase 40 OS=Homo sapiens GN=NAA40 PE=2 SV=1;; (*TAIR) AT1G18335.1 (e_value=1e-83) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:6309428-6311326 REVERSE LENGTH=269;; (*ITAG) Solyc06g072500.2.1 (e_value=1e-149) genomic_reference:SL2.40ch06 gene_region:41103361-41106812 transcript_region:SL2.40ch06:41103361..41106812+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6TH38_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00031075g0006.1 protein AED:0.24 eAED:0.27 QI:41|0.5|0.33|1|1|1|3|0|351; (*GB) gi|255551669|ref|XP_002516880.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-122) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G18610.2 (e_value=2e-165) | Symbols: | Protein kinase superfamily protein | chr5:6192736-6195371 FORWARD LENGTH=513;; (*ITAG) Solyc01g067400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68270103-68279664 transcript_region:SL2.40ch01:68270103..68279664- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00006836g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.5|1|1|1|4|264|389; (*GB) gi|255577279|ref|XP_002529521.1| (e_value=2e-58) cysteine-type endopeptidase, putative [Ricinus communis];; (*SWP) sp|Q9FPS2|UBP25_ARATH (e_value=2e-43) Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1;; (*TAIR) AT3G14400.1 (e_value=2e-44) | Symbols: UBP25 | ubiquitin-specific protease 25 | chr3:4811953-4815210 REVERSE LENGTH=661;; (*ITAG) Solyc07g056520.2.1 (e_value=1e-168) genomic_reference:SL2.40ch07 gene_region:61634585-61644861 transcript_region:SL2.40ch07:61634585..61644861- go_terms:GO:0004843,GO:0005515 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SU52_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0005515 NbS00006836g0003.1 protein AED:0.60 eAED:0.74 QI:0|0|0|0.33|1|1|6|0|144; (*ITAG) Solyc07g056510.2.1 (e_value=3e-15) genomic_reference:SL2.40ch07 gene_region:61632385-61633876 transcript_region:SL2.40ch07:61632385..61633876- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** D3Y4H6_9ROSI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00008652g0015.1 protein AED:0.21 eAED:0.25 QI:0|0.16|0.28|0.71|0.33|0.28|7|0|246; (*GB) gi|113595|sp|P23901.1|ALDR_HORVU (e_value=2e-82) RecName: Full=Aldose reductase; Short=AR; AltName: Full=Aldehyde reductase;; (*SWP) sp|P23901|ALDR_HORVU (e_value=5e-84) Aldose reductase OS=Hordeum vulgare PE=1 SV=1;; (*TAIR) AT5G01670.1 (e_value=1e-81) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:252000-253856 FORWARD LENGTH=322;; (*ITAG) Solyc09g015070.2.1 (e_value=3e-109) genomic_reference:SL2.40ch09 gene_region:7889720-7892947 transcript_region:SL2.40ch09:7889720..7892947- go_terms:GO:0045290 functional_description:"Reductase 1 (AHRD V1 ***- Q6TY49_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0045290 NbS00008652g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|4|0|416; (*GB) gi|325516276|gb|ADZ24716.1| (e_value=0.0) Sec14-like protein [Solanum pennellii];; (*SWP) sp|Q9SCU1|PATL6_ARATH (e_value=0.0) Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1;; (*TAIR) AT3G51670.1 (e_value=0.0) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:19168912-19170848 FORWARD LENGTH=409;; (*ITAG) Solyc09g015080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7923019-7925704 transcript_region:SL2.40ch09:7923019..7925704- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C5JFB2_AJEDS); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00008652g0006.1 protein AED:0.66 eAED:1.00 QI:0|0|0|0.66|1|1|6|0|98 NbS00008652g0014.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|2|0|502; (*GB) gi|225439570|ref|XP_002264939.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263765 [Vitis vinifera];; (*TAIR) AT5G01710.1 (e_value=0.0) | Symbols: | methyltransferases | chr5:263709-265250 REVERSE LENGTH=513;; (*ITAG) Solyc09g015040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7854568-7856100 transcript_region:SL2.40ch09:7854568..7856100+ functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00023319g0011.1 protein AED:0.00 eAED:0.00 QI:449|1|1|1|1|1|2|1125|86; (*GB) gi|224098750|ref|XP_002311255.1| (e_value=6e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SF24|LOR10_ARATH (e_value=9e-21) Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2;; (*TAIR) AT3G11740.1 (e_value=7e-22) | Symbols: | Protein of unknown function (DUF567) | chr3:3712427-3713389 FORWARD LENGTH=194;; (*ITAG) Solyc06g050810.2.1 (e_value=1e-54) genomic_reference:SL2.40ch06 gene_region:30083146-30084651 transcript_region:SL2.40ch06:30083146..30084651- functional_description:"Os03g0816700 protein (Fragment) (AHRD V1 ***- Q0DMC9_ORYSJ); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00023319g0012.1 protein AED:0.42 eAED:0.43 QI:0|0|0|0.5|0.66|0.5|4|0|240; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-26) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00023319g0009.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|181 NbS00023319g0010.1 protein AED:0.17 eAED:0.17 QI:295|0.83|0.71|1|0.66|0.57|7|0|589; (*GB) gi|357461473|ref|XP_003601018.1| (e_value=5e-175) Sodium-coupled neutral amino acid transporter [Medicago truncatula];; (*SWP) sp|Q6DEL1|S38A7_DANRE (e_value=3e-19) Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1;; (*TAIR) AT3G56200.1 (e_value=5e-146) | Symbols: | Transmembrane amino acid transporter family protein | chr3:20850087-20851779 FORWARD LENGTH=435;; (*ITAG) Solyc06g050800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30080684-30082578 transcript_region:SL2.40ch06:30080684..30082578+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9HYI5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00020779g0001.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|1|1|2|0|594; (*GB) gi|225466051|ref|XP_002263650.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SB36|PP337_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1;; (*TAIR) AT4G25270.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:12937253-12938836 REVERSE LENGTH=527;; (*ITAG) Solyc03g025700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7498208-7499827 transcript_region:SL2.40ch03:7498208..7499827+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00020779g0003.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|1|1|5|437|193; (*GB) gi|147805296|emb|CAN78264.1| (e_value=1e-28) hypothetical protein VITISV_006706 [Vitis vinifera];; (*TAIR) AT1G72030.1 (e_value=1e-12) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:27110887-27111825 FORWARD LENGTH=256;; (*ITAG) Solyc03g025710.2.1 (e_value=3e-34) genomic_reference:SL2.40ch03 gene_region:7500031-7502230 transcript_region:SL2.40ch03:7500031..7502230- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase (AHRD V1 ***- B2IU63_NOSP7); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00005880g0006.1 protein AED:0.01 eAED:0.01 QI:328|0.75|0.6|1|0.75|0.8|5|0|158; (*GB) gi|45387407|gb|AAS60194.1| (e_value=2e-56) hexokinase 3 [Nicotiana tabacum];; (*SWP) sp|Q9SEK2|HXK1_TOBAC (e_value=1e-57) Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1;; (*TAIR) AT4G29130.1 (e_value=5e-44) | Symbols: ATHXK1, GIN2, HXK1 | hexokinase 1 | chr4:14352338-14354865 REVERSE LENGTH=496;; (*ITAG) Solyc06g066440.2.1 (e_value=3e-58) genomic_reference:SL2.40ch06 gene_region:38097051-38101667 transcript_region:SL2.40ch06:38097051..38101667- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FR27_SOLLC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbS00025596g0021.1 protein AED:0.16 eAED:0.20 QI:493|1|0.5|1|0.66|0.75|4|0|720; (*GB) gi|147818710|emb|CAN65039.1| (e_value=2e-145) hypothetical protein VITISV_009459 [Vitis vinifera];; (*TAIR) AT1G13940.1 (e_value=1e-57) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005;; (*ITAG) Solyc05g012650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5844016-5851353 transcript_region:SL2.40ch05:5844016..5851353- go_terms:GO:0032259 functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; GO:0032259 NbS00025596g0002.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|343; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=5e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69360.1 (e_value=2e-50) | Symbols: | Plant protein of unknown function (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896;; (*ITAG) Solyc05g012640.2.1 (e_value=4e-121) genomic_reference:SL2.40ch05 gene_region:5834062-5837811 transcript_region:SL2.40ch05:5834062..5837811- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00025596g0028.1 protein AED:0.13 eAED:0.13 QI:221|1|1|1|0.5|0.55|9|465|336; (*GB) gi|255542114|ref|XP_002512121.1| (e_value=2e-160) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G03390.1 (e_value=1e-146) | Symbols: | uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330;; (*ITAG) Solyc05g012620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5826134-5829446 transcript_region:SL2.40ch05:5826134..5829446+ go_terms:GO:0006289 functional_description:"Hemimethylated DNA binding protein (AHRD V1 *-*- B0T8J4_CAUSK); contains Interpro domain(s) IPR011722 Hemimethylated DNA-binding region "; GO:0006289 NbS00025596g0030.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|0.5|0.4|5|376|185; (*GB) gi|357487425|ref|XP_003614000.1| (e_value=6e-53) hypothetical protein MTR_5g043580 [Medicago truncatula];; (*TAIR) AT2G03420.1 (e_value=3e-43) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170;; (*ITAG) Solyc05g012600.2.1 (e_value=5e-80) genomic_reference:SL2.40ch05 gene_region:5809514-5811188 transcript_region:SL2.40ch05:5809514..5811188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025596g0004.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|225423549|ref|XP_002274857.1| (e_value=4e-154) PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=7e-140) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=5e-141) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00025596g0023.1 protein AED:0.29 eAED:0.31 QI:206|0.75|0.84|1|0.5|0.53|13|310|472; (*GB) gi|222624200|gb|EEE58332.1| (e_value=0.0) hypothetical protein OsJ_09433 [Oryza sativa Japonica Group];; (*SWP) sp|Q5CZL1|GDAP2_XENTR (e_value=9e-69) Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1;; (*TAIR) AT1G69340.1 (e_value=3e-147) | Symbols: | appr-1-p processing enzyme family protein | chr1:26066298-26069644 FORWARD LENGTH=562;; (*ITAG) Solyc05g012610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5816462-5824337 transcript_region:SL2.40ch05:5816462..5824337+ functional_description:"Appr-1-p processing enzyme domain protein (AHRD V1 *--- Q73R59_TREDE); contains Interpro domain(s) IPR002589 Appr-1-p processing "; NbS00025596g0031.1 protein AED:0.34 eAED:0.38 QI:0|0.4|0.16|1|0.6|0.66|6|0|244; (*GB) gi|359472517|ref|XP_002271979.2| (e_value=4e-106) PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Vitis vinifera];; (*SWP) sp|Q54HW1|PSD10_DICDI (e_value=3e-23) 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=7e-94) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc05g012590.2.1 (e_value=6e-128) genomic_reference:SL2.40ch05 gene_region:5805482-5808679 transcript_region:SL2.40ch05:5805482..5808679+ go_terms:GO:0008134 functional_description:"Ankyrin repeat and KH domain-containing protein 1 (AHRD V1 **-- ANKH1_HUMAN); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00025596g0005.1 protein AED:0.35 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|225423549|ref|XP_002274857.1| (e_value=3e-85) PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=1e-72) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=8e-74) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=1e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00025596g0003.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|161; (*GB) gi|255542116|ref|XP_002512122.1| (e_value=3e-25) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=4e-26) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=3e-27) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=7e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00016364g0009.1 protein AED:0.36 eAED:0.37 QI:248|0.5|0.6|1|1|1|5|0|552; (*GB) gi|169647567|gb|ACA61780.1| (e_value=0.0) BIPINNATA [Solanum lycopersicum];; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=3e-109) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=2e-110) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc02g089940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46203178-46209064 transcript_region:SL2.40ch02:46203178..46209064+ go_terms:GO:0005515,GO:0003677 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 **-- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005515,GO:0003677 NbS00016364g0017.1 protein AED:0.12 eAED:0.12 QI:125|1|1|1|0.5|0.33|3|437|537; (*GB) gi|224094662|ref|XP_002310195.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVM0|Y3078_ARATH (e_value=0.0) BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana GN=At3g50780 PE=2 SV=1;; (*TAIR) AT3G50780.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1); Has 298 Blast hits to 298 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18875662-18877341 REVERSE LENGTH=520;; (*ITAG) Solyc02g089950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46214574-46218291 transcript_region:SL2.40ch02:46214574..46218291- functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ)"; NbS00016364g0013.1 protein AED:0.14 eAED:0.14 QI:126|1|1|1|1|1|2|435|537; (*GB) gi|224094662|ref|XP_002310195.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVM0|Y3078_ARATH (e_value=0.0) BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana GN=At3g50780 PE=2 SV=1;; (*TAIR) AT3G50780.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1); Has 298 Blast hits to 298 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18875662-18877341 REVERSE LENGTH=520;; (*ITAG) Solyc02g089950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46214574-46218291 transcript_region:SL2.40ch02:46214574..46218291- functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ)"; NbS00001945g0012.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|0.5|0.33|3|0|176; (*GB) gi|388495774|gb|AFK35953.1| (e_value=1e-27) unknown [Lotus japonicus];; (*ITAG) Solyc08g048080.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37782633-37782920 transcript_region:SL2.40ch08:37782633..37782920- functional_description:"Unknown Protein (AHRD V1)"; NbS00001945g0004.1 protein AED:0.19 eAED:0.19 QI:1833|1|1|1|1|1|2|603|119; (*GB) gi|359486786|ref|XP_002283148.2| (e_value=4e-41) PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Vitis vinifera];; (*SWP) sp|Q9M2S6|SDIR1_ARATH (e_value=3e-31) E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1;; (*TAIR) AT3G55530.1 (e_value=2e-32) | Symbols: SDIR1 | RING/U-box superfamily protein | chr3:20595300-20597188 REVERSE LENGTH=273;; (*ITAG) Solyc05g053040.2.1 (e_value=1e-48) genomic_reference:SL2.40ch05 gene_region:62337827-62341566 transcript_region:SL2.40ch05:62337827..62341566+ go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 *-*- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00012157g0002.1 protein AED:0.24 eAED:0.55 QI:173|0|0.5|1|0|0.5|2|0|172; (*GB) gi|147780708|emb|CAN69109.1| (e_value=2e-25) hypothetical protein VITISV_025716 [Vitis vinifera];; (*SWP) sp|Q8RY16|PEX6_ARATH (e_value=5e-23) Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6 PE=1 SV=1;; (*TAIR) AT1G03000.1 (e_value=3e-24) | Symbols: PEX6 | peroxin 6 | chr1:688057-692453 REVERSE LENGTH=941;; (*ITAG) Solyc06g008730.2.1 (e_value=4e-47) genomic_reference:SL2.40ch06 gene_region:2643190-2651308 transcript_region:SL2.40ch06:2643190..2651308- go_terms:GO:0042623,GO:0005200 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005200 NbS00012432g0008.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.6|1|0.75|0.6|5|208|247; (*GB) gi|350539391|ref|NP_001234135.1| (e_value=1e-152) SKIP5-like protein [Solanum lycopersicum];; (*SWP) sp|Q94FT2|SKIP5_ARATH (e_value=2e-108) F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1;; (*TAIR) AT3G54480.1 (e_value=2e-109) | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein 5 | chr3:20170883-20173325 REVERSE LENGTH=274;; (*ITAG) Solyc11g005590.1.1 (e_value=3e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:446522-449364 transcript_region:SL2.40ch11:446522..449364+ functional_description:"F-box protein SKIP5 (AHRD V1 ***- SKIP5_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012432g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|0.5|0.66|3|555|110; (*GB) gi|7757910|gb|AAD52847.2|AF137288_1 (e_value=2e-58) putative translation initiation factor 2B beta subunit [Nicotiana tabacum];; (*SWP) sp|Q54EY2|EI2BB_DICDI (e_value=1e-19) Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1;; (*TAIR) AT3G07300.3 (e_value=5e-54) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr3:2324967-2327380 REVERSE LENGTH=409;; (*ITAG) Solyc11g005600.1.1 (e_value=6e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:450933-456855 transcript_region:SL2.40ch11:450933..456855- go_terms:GO:0003743 functional_description:"Translation initiation factor 2B (AHRD V1 **** Q2UBN6_ASPOR); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0003743 NbS00005118g0001.1 protein AED:0.32 eAED:0.32 QI:159|0.91|1|1|0.83|0.76|13|377|504; (*GB) gi|359476253|ref|XP_002280119.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CBK1 [Vitis vinifera];; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=4e-142) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.2 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=507;; (*ITAG) Solyc08g062670.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032631g0004.1 protein AED:0.17 eAED:0.17 QI:339|1|0.8|1|0.75|0.6|5|0|663; (*GB) gi|225429942|ref|XP_002281263.1| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=6e-91) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT4G32790.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr4:15812566-15814908 FORWARD LENGTH=593;; (*ITAG) Solyc08g066680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52713239-52717107 transcript_region:SL2.40ch08:52713239..52717107- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00047460g0003.1 protein AED:0.42 eAED:0.44 QI:0|0.66|0.42|1|1|1|7|0|211; (*GB) gi|255566403|ref|XP_002524187.1| (e_value=8e-98) Nuclear import protein mog1, putative [Ricinus communis];; (*SWP) sp|Q54ML6|MOG1_DICDI (e_value=9e-16) Probable ran guanine nucleotide release factor OS=Dictyostelium discoideum GN=mog1 PE=3 SV=1;; (*TAIR) AT1G69680.1 (e_value=2e-89) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:26205148-26206568 FORWARD LENGTH=202;; (*ITAG) Solyc01g010810.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:6209686-6214247 transcript_region:SL2.40ch01:6209686..6214247- go_terms:GO:0005085,GO:0008536 functional_description:"RAN guanine nucleotide release factor (AHRD V1 **-* B6TPU9_MAIZE); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0005085,GO:0008536 NbS00018096g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|828; (*GB) gi|296084035|emb|CBI24423.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=1e-113) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc10g081910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62177615-62180770 transcript_region:SL2.40ch10:62177615..62180770+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00018096g0001.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|113205400|gb|AAU90303.2| (e_value=2e-27) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc00g027120.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00018096g0008.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|224091435|ref|XP_002309250.1| (e_value=5e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|P43298|TMK1_ARATH (e_value=6e-31) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=5e-32) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc10g081910.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62177615-62180770 transcript_region:SL2.40ch10:62177615..62180770+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00018096g0015.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|92; (*ITAG) Solyc08g048200.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:38280858-38282373 transcript_region:SL2.40ch08:38280858..38282373+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00043987g0007.1 protein AED:0.13 eAED:0.14 QI:334|0.5|0.42|0.85|0.66|0.71|7|0|909; (*GB) gi|225437591|ref|XP_002277419.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Vitis vinifera];; (*SWP) sp|O22907|RH24_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2;; (*TAIR) AT2G47330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19429083-19431617 REVERSE LENGTH=760;; (*ITAG) Solyc01g079330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70909331-70918655 transcript_region:SL2.40ch01:70909331..70918655- go_terms:GO:0005515 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00008765g0027.1 protein AED:0.14 eAED:0.15 QI:0|0.81|0.66|1|0.81|0.91|12|0|759; (*GB) gi|255556394|ref|XP_002519231.1| (e_value=0.0) map3k delta-1 protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-82) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=0.0) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc12g099250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00008765g0022.1 protein AED:0.16 eAED:0.16 QI:208|1|1|1|0.93|0.88|17|11|608; (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=0.0) ATP:citrate lyase [Capsicum annuum];; (*SWP) sp|Q93VT8|ACLB1_ORYSJ (e_value=0.0) ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT5G49460.1 (e_value=0.0) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc12g099260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00008765g0033.1 protein AED:0.13 eAED:0.17 QI:0|0.33|0|1|0|0|4|0|459; (*GB) gi|224108736|ref|XP_002314950.1| (e_value=2e-105) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67890.1 (e_value=1e-76) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr1:25457345-25462436 FORWARD LENGTH=765;; (*ITAG) Solyc12g099250.1.1 (e_value=4e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00008765g0034.1 protein AED:0.10 eAED:0.22 QI:0|0|0|1|0.2|0.33|6|0|431; (*GB) gi|296083240|emb|CBI22876.3| (e_value=3e-82) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G49470.3 (e_value=3e-57) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc12g099250.1.1 (e_value=1e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00008765g0002.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|224108736|ref|XP_002314950.1| (e_value=5e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67890.1 (e_value=3e-50) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr1:25457345-25462436 FORWARD LENGTH=765;; (*ITAG) Solyc12g099250.1.1 (e_value=7e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00008765g0031.1 protein AED:0.41 eAED:0.42 QI:0|0.16|0.14|1|0.83|0.85|7|0|197; (*GB) gi|224101557|ref|XP_002312329.1| (e_value=3e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-53) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=2e-78) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc01g059860.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:61725129-61733391 transcript_region:SL2.40ch01:61725129..61733391- go_terms:GO:0000160,GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7L5X4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0006355,GO:0007165 NbS00008765g0025.1 protein AED:0.44 eAED:0.72 QI:0|0|0.5|1|0|0|2|19|34 NbS00008765g0028.1 protein AED:0.13 eAED:0.13 QI:112|1|1|1|1|1|4|333|109; (*GB) gi|356564876|ref|XP_003550673.1| (e_value=1e-56) PREDICTED: huntingtin-interacting protein K-like [Glycine max];; (*SWP) sp|Q9CR41|HYPK_MOUSE (e_value=6e-15) Huntingtin-interacting protein K OS=Mus musculus GN=Hypk PE=2 SV=2;; (*TAIR) AT3G06610.1 (e_value=5e-51) | Symbols: | DNA-binding enhancer protein-related | chr3:2060837-2061845 FORWARD LENGTH=115;; (*ITAG) Solyc12g099240.1.1 (e_value=2e-69) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64786587-64788747 transcript_region:SL2.40ch12:64786587..64788747+ functional_description:"Huntingtin interacting protein K (AHRD V1 ***- B6THW6_MAIZE)"; NbS00011315g0008.1 protein AED:0.17 eAED:0.17 QI:132|1|1|1|1|1|3|545|191; (*GB) gi|356505508|ref|XP_003521532.1| (e_value=3e-46) PREDICTED: uncharacterized protein LOC100816761 [Glycine max];; (*TAIR) AT4G03180.1 (e_value=3e-31) | Symbols: | CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). | chr4:1403289-1404663 FORWARD LENGTH=185;; (*ITAG) Solyc06g084500.2.1 (e_value=6e-70) genomic_reference:SL2.40ch06 gene_region:45874013-45875152 transcript_region:SL2.40ch06:45874013..45875152- functional_description:"Unknown Protein (AHRD V1)"; NbS00011315g0005.1 protein AED:0.39 eAED:0.39 QI:203|1|1|1|0.63|0.83|12|206|286; (*GB) gi|225436781|ref|XP_002268410.1| (e_value=3e-147) PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=2e-75) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT3G62970.1 (e_value=5e-136) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:23270636-23272698 FORWARD LENGTH=287;; (*ITAG) Solyc06g084510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45879870-45887797 transcript_region:SL2.40ch06:45879870..45887797- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q2QP88_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00011315g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|156891141|gb|ABU96708.1| (e_value=6e-57) glutaredoxin [Solanum tuberosum];; (*SWP) sp|O82255|GRC13_ARATH (e_value=8e-45) Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1;; (*TAIR) AT2G47880.1 (e_value=6e-46) | Symbols: | Glutaredoxin family protein | chr2:19605124-19605432 FORWARD LENGTH=102;; (*ITAG) Solyc06g008760.1.1 (e_value=4e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2680655-2680960 transcript_region:SL2.40ch06:2680655..2680960+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B3F8F2_SOLTU); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00011315g0101.1 protein AED:0.26 eAED:0.26 QI:201|1|0.5|1|1|1|2|0|253 NbS00011315g0102.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|151 NbS00011315g0112.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|0.5|0.66|3|0|632 NbS00011315g0109.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|59 NbS00025531g0008.1 protein AED:0.14 eAED:0.14 QI:83|1|0.8|1|0|0.2|5|0|139; (*ITAG) Solyc12g006280.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:796674-800864 transcript_region:SL2.40ch12:796674..800864+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein (AHRD V1 *--- Q7XCL9_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00025531g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|66274401|gb|AAY43976.1| (e_value=3e-55) glycine rich protein-interacting protein [Nicotiana tabacum];; (*ITAG) Solyc12g006260.1.1 (e_value=5e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:774625-775032 transcript_region:SL2.40ch12:774625..775032- functional_description:"Glycine rich protein-interacting protein (AHRD V1 ***- Q4U602_TOBAC)"; NbS00025531g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|0.75|0.66|0.75|4|0|194; (*GB) gi|225447474|ref|XP_002264182.1| (e_value=5e-101) PREDICTED: protein transport protein SFT2 [Vitis vinifera];; (*TAIR) AT4G26550.1 (e_value=5e-93) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr4:13402755-13404208 REVERSE LENGTH=225;; (*ITAG) Solyc12g006250.1.1 (e_value=2e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:767893-772131 transcript_region:SL2.40ch12:767893..772131+ go_terms:GO:0016021 functional_description:"Transport protein SFT2 (AHRD V1 *--- C9SJZ4_VERA1); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0016021 NbS00006418g0006.1 protein AED:0.08 eAED:0.08 QI:194|0.75|0.8|1|0.5|0.2|5|171|613; (*GB) gi|225462681|ref|XP_002266878.1| (e_value=1e-98) PREDICTED: uncharacterized protein LOC100255280 [Vitis vinifera];; (*TAIR) AT5G53220.3 (e_value=2e-51) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21596824-21598004 FORWARD LENGTH=368;; (*ITAG) Solyc03g007420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1963164-1967696 transcript_region:SL2.40ch03:1963164..1967696+ functional_description:"Genomic DNA chromosome 5 TAC clone K19E1 (AHRD V1 *-*- Q9FK19_ARATH)"; NbS00056554g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|142; (*ITAG) Solyc08g068060.2.1 (e_value=2e-66) genomic_reference:SL2.40ch08 gene_region:54362065-54365885 transcript_region:SL2.40ch08:54362065..54365885+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056554g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|0|1|0|142; (*GB) gi|225457937|ref|XP_002273919.1| (e_value=7e-55) PREDICTED: 60S ribosomal protein L24, mitochondrial [Vitis vinifera];; (*TAIR) AT4G31460.1 (e_value=2e-48) | Symbols: | Ribosomal L28 family | chr4:15259773-15260847 REVERSE LENGTH=212;; (*ITAG) Solyc08g065760.2.1 (e_value=3e-80) genomic_reference:SL2.40ch08 gene_region:51280952-51284144 transcript_region:SL2.40ch08:51280952..51284144- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 *-*- D5BMV5_PUNMI); contains Interpro domain(s) IPR001383 Ribosomal protein L28 "; GO:0005840 NbS00002797g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|225427183|ref|XP_002277896.1| (e_value=5e-103) PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Vitis vinifera];; (*SWP) sp|Q7XLY8|ATL41_ORYSJ (e_value=3e-65) E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2;; (*TAIR) AT5G17600.1 (e_value=3e-66) | Symbols: | RING/U-box superfamily protein | chr5:5800029-5801117 REVERSE LENGTH=362;; (*ITAG) Solyc06g061250.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35649908-35650909 transcript_region:SL2.40ch06:35649908..35650909+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003147g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|830; (*GB) gi|224104501|ref|XP_002313457.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=0.0) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=0.0) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00001557g0012.1 protein AED:0.00 eAED:0.00 QI:22|1|1|1|0|1|2|5|141; (*GB) gi|255579739|ref|XP_002530708.1| (e_value=6e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42110.1 (e_value=7e-26) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17562234-17562732 REVERSE LENGTH=137;; (*ITAG) Solyc03g120950.2.1 (e_value=8e-47) genomic_reference:SL2.40ch03 gene_region:63241149-63242556 transcript_region:SL2.40ch03:63241149..63242556+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001557g0008.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|496647|emb|CAA54838.1| (e_value=6e-68) STIG1 [Nicotiana tabacum];; (*ITAG) Solyc03g120960.1.1 (e_value=9e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63243709-63244140 transcript_region:SL2.40ch03:63243709..63244140+ go_terms:GO:0004872 functional_description:"STIG1 (AHRD V1 ***- Q6EEH1_SOLLC); contains Interpro domain(s) IPR001368 TNFR/CD27/30/40/95 cysteine-rich region "; GO:0004872 NbS00001557g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|116780956|gb|ABK21898.1| (e_value=7e-47) unknown [Picea sitchensis];; (*SWP) sp|P30171|ACT11_SOLTU (e_value=3e-46) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=3e-47) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=2e-47) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00012705g0002.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.25|0.75|1|1|4|0|193; (*GB) gi|205829189|sp|B2X050.1|MNR1_CAPAN (e_value=1e-88) RecName: Full=(+)-neomenthol dehydrogenase; AltName: Full=Menthone:neomenthol reductase 1; Short=CaMNR1;; (*SWP) sp|B2X050|MNR1_CAPAN (e_value=3e-90) (+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1;; (*TAIR) AT1G01800.2 (e_value=2e-55) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:293595-294888 FORWARD LENGTH=260;; (*ITAG) Solyc01g094260.2.1 (e_value=8e-103) genomic_reference:SL2.40ch01 gene_region:77565592-77569466 transcript_region:SL2.40ch01:77565592..77569466+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase (AHRD V1 ***- B0KZQ5_CAPAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00024706g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.33|3|1266|239; (*GB) gi|85069279|gb|ABC69711.1| (e_value=2e-104) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=2e-52) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=1e-53) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00024706g0014.1 protein AED:0.68 eAED:0.68 QI:90|0|0|0.4|0.5|0.8|5|0|110; (*GB) gi|85069279|gb|ABC69711.1| (e_value=2e-36) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=7e-36) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=5e-37) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=1e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00024706g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.87|0.66|1|1|1|9|0|908; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=0.0) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00061800g0004.1 protein AED:0.04 eAED:0.04 QI:85|1|0.66|1|1|1|3|0|95 NbS00061180g0007.1 protein AED:0.07 eAED:0.07 QI:1348|1|1|1|0.54|0.41|12|274|618; (*GB) gi|359482516|ref|XP_002275886.2| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=3e-173) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT5G56890.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23010801-23015559 REVERSE LENGTH=1113;; (*ITAG) Solyc03g121610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63753788-63759520 transcript_region:SL2.40ch03:63753788..63759520- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00061180g0006.1 protein AED:0.08 eAED:0.09 QI:0|0.75|0.4|1|1|1|5|390|447; (*GB) gi|225442275|ref|XP_002275841.1| (e_value=0.0) PREDICTED: protein HOTHEAD-like [Vitis vinifera];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=0.0) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G72970.1 (e_value=0.0) | Symbols: HTH, EDA17 | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27452872-27455706 FORWARD LENGTH=594;; (*ITAG) Solyc03g121600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63750470-63753346 transcript_region:SL2.40ch03:63750470..63753346+ go_terms:GO:0046593 functional_description:"Choline dehydrogenase (AHRD V1 ***- B0WJG6_CULQU); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0046593 NbS00032091g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|1|0.66|0.5|4|0|388; (*GB) gi|255585738|ref|XP_002533550.1| (e_value=9e-170) acetylglucosaminyltransferase, putative [Ricinus communis];; (*TAIR) AT4G27480.2 (e_value=2e-167) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc10g007040.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1431324-1434091 transcript_region:SL2.40ch10:1431324..1434091- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00032091g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.57|1|1|1|7|0|598; (*GB) gi|359493838|ref|XP_002285016.2| (e_value=4e-152) PREDICTED: uncharacterized protein LOC100267528 [Vitis vinifera];; (*TAIR) AT4G27500.1 (e_value=5e-122) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc12g013860.1.1 (e_value=8e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4651498-4653389 transcript_region:SL2.40ch12:4651498..4653389+ functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00021217g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|0.5|2|0|411; (*GB) gi|297739790|emb|CBI29972.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G58520.1 (e_value=3e-177) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr3:21643921-21645277 REVERSE LENGTH=418;; (*ITAG) Solyc01g105040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85090588-85092408 transcript_region:SL2.40ch01:85090588..85092408- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00021217g0003.1 protein AED:0.62 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|96 NbS00037775g0016.1 protein AED:0.14 eAED:0.14 QI:207|1|0.92|1|1|1|13|0|581; (*GB) gi|225450573|ref|XP_002281965.1| (e_value=0.0) PREDICTED: solute carrier family 40 member 1 [Vitis vinifera];; (*SWP) sp|Q8W4E7|S40A3_ARATH (e_value=0.0) Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1;; (*TAIR) AT5G26820.1 (e_value=0.0) | Symbols: ATIREG3, MAR1, RTS3, IREG3 | iron-regulated protein 3 | chr5:9433858-9437005 FORWARD LENGTH=598;; (*ITAG) Solyc01g100610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82351316-82358072 transcript_region:SL2.40ch01:82351316..82358072- go_terms:GO:0005215 functional_description:"Solute carrier family 40 member 1 (AHRD V1 **-- S40A1_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005215 NbS00037775g0014.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|8|0|368; (*GB) gi|359487547|ref|XP_002277687.2| (e_value=5e-174) PREDICTED: uncharacterized protein LOC100244357 [Vitis vinifera];; (*TAIR) AT3G62370.1 (e_value=2e-156) | Symbols: | heme binding | chr3:23080789-23083234 FORWARD LENGTH=361;; (*ITAG) Solyc01g100590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82330045-82336272 transcript_region:SL2.40ch01:82330045..82336272- go_terms:GO:0055114 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain "; GO:0055114 NbS00037775g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.6|0.33|1|0.8|0.66|6|0|402; (*GB) gi|357492259|ref|XP_003616418.1| (e_value=4e-36) hypothetical protein MTR_5g080030 [Medicago truncatula];; (*ITAG) Solyc01g100620.1.1 (e_value=4e-145) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82360185-82364004 transcript_region:SL2.40ch01:82360185..82364004+ go_terms:GO:0006508,GO:0005634,GO:0005622 functional_description:"Non-histone chromosomal protein 6 (AHRD V1 *-*- NHP6_CRYNE); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0006508,GO:0005634,GO:0005622 NbS00037775g0019.1 protein AED:0.04 eAED:0.10 QI:0|0|0|0.66|0.5|0.66|3|0|458; (*GB) gi|296090345|emb|CBI40164.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=1e-17) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=8e-19) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc03g046490.1.1 (e_value=2e-134) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16899475-16900704 transcript_region:SL2.40ch03:16899475..16900704+ functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037641g0004.1 protein AED:0.17 eAED:0.17 QI:581|1|0.83|1|1|1|6|646|428; (*GB) gi|359475796|ref|XP_002282416.2| (e_value=2e-113) PREDICTED: protein TIFY 8-like [Vitis vinifera];; (*SWP) sp|Q84MB2|TIF8_ARATH (e_value=7e-39) Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=1 SV=1;; (*TAIR) AT4G32570.1 (e_value=5e-40) | Symbols: TIFY8 | TIFY domain protein 8 | chr4:15716433-15718702 REVERSE LENGTH=361;; (*ITAG) Solyc06g065650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37444279-37451016 transcript_region:SL2.40ch06:37444279..37451016+ functional_description:"Protein TIFY 8 (AHRD V1 ***- TIF8_ARATH); contains Interpro domain(s) IPR010399 Tify "; NbS00016122g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|132|331; (*GB) gi|46849531|dbj|BAD17856.1| (e_value=0.0) gibberellin 2-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=4e-152) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G30040.1 (e_value=4e-130) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc07g056670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61794905-61796465 transcript_region:SL2.40ch07:61794905..61796465- go_terms:GO:0004062 functional_description:"Gibberellin 2-oxidase 2 (AHRD V1 ***- A0FK57_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0004062 NbS00014132g0001.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0|1|1|1|3|0|879; (*GB) gi|359484356|ref|XP_002280856.2| (e_value=6e-50) PREDICTED: uncharacterized protein LOC100250746 [Vitis vinifera];; (*TAIR) AT3G24630.1 (e_value=3e-15) | Symbols: | unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988398-8990737 FORWARD LENGTH=724;; (*ITAG) Solyc07g032710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:40553149-40556921 transcript_region:SL2.40ch07:40553149..40556921- functional_description:"Genomic DNA chromosome 3 P1 clone MSD24 (AHRD V1 *-*- Q9LJ43_ARATH)"; NbS00021599g0011.1 protein AED:0.04 eAED:0.04 QI:345|1|1|1|1|1|5|164|209; (*GB) gi|225444367|ref|XP_002266933.1| (e_value=3e-33) PREDICTED: uncharacterized protein LOC100258839 [Vitis vinifera];; (*TAIR) AT4G28556.1 (e_value=3e-22) | Symbols: RIC7 | PAK-box/P21-Rho-binding family protein | chr4:14114754-14115795 FORWARD LENGTH=216;; (*ITAG) Solyc02g080230.2.1 (e_value=2e-60) genomic_reference:SL2.40ch02 gene_region:39084532-39087315 transcript_region:SL2.40ch02:39084532..39087315+ functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00021599g0012.1 protein AED:0.22 eAED:0.22 QI:227|0.66|0.5|1|0.33|0.5|4|271|117; (*GB) gi|225444363|ref|XP_002266688.1| (e_value=9e-55) PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=7e-41) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=5e-42) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc10g005330.2.1 (e_value=5e-65) genomic_reference:SL2.40ch10 gene_region:239692-245015 transcript_region:SL2.40ch10:239692..245015- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00023066g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.6|1|0.75|0.8|5|433|196; (*GB) gi|40287492|gb|AAR83860.1| (e_value=2e-93) putative ribosomal protein [Capsicum annuum];; (*SWP) sp|P34788|RS18_ARATH (e_value=3e-89) 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1;; (*TAIR) AT4G09800.1 (e_value=2e-90) | Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152;; (*ITAG) Solyc11g005680.1.1 (e_value=7e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:502496-504749 transcript_region:SL2.40ch11:502496..504749- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S18 (AHRD V1 ***- B4G286_MAIZE); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003735,GO:0005515 NbS00023066g0010.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|0|0|3|0|258; (*GB) gi|82621160|gb|ABB86268.1| (e_value=5e-129) Tic20-like protein [Solanum tuberosum];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=1e-121) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04940.1 (e_value=8e-123) | Symbols: TIC20 | translocon at the inner envelope membrane of chloroplasts 20 | chr1:1399588-1400616 FORWARD LENGTH=274;; (*ITAG) Solyc05g054720.2.1 (e_value=4e-130) genomic_reference:SL2.40ch05 gene_region:63726470-63729065 transcript_region:SL2.40ch05:63726470..63729065+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00010829g0008.1 protein AED:0.29 eAED:0.30 QI:0|0.66|0.25|1|1|1|4|0|237; (*GB) gi|225468200|ref|XP_002274349.1| (e_value=2e-72) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=4e-39) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT2G22360.1 (e_value=2e-69) | Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD LENGTH=442;; (*ITAG) Solyc01g105340.2.1 (e_value=4e-78) genomic_reference:SL2.40ch01 gene_region:85301588-85307119 transcript_region:SL2.40ch01:85301588..85307119+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00010829g0009.1 protein AED:0.35 eAED:0.43 QI:0|0.33|0.5|1|0|0.5|4|101|71 NbS00019604g0008.1 protein AED:0.15 eAED:0.15 QI:147|1|1|1|1|1|4|121|364; (*GB) gi|53749430|gb|AAU90286.1| (e_value=0.0) Putative pyridine nucleotide-disulphide oxidoreductase, identical [Solanum demissum];; (*SWP) sp|Q54NS8|AIFB_DICDI (e_value=1e-49) Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1;; (*TAIR) AT3G44190.1 (e_value=2e-169) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367;; (*ITAG) Solyc11g071990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52375127-52377545 transcript_region:SL2.40ch11:52375127..52377545+ functional_description:"Nitric oxide reductase FlRd-NAD(+) reductase (AHRD V1 **-- NORW_VIBFM); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; NbS00019604g0004.1 protein AED:0.27 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc11g071380.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:51959297-51959851 transcript_region:SL2.40ch11:51959297..51959851- functional_description:"Unknown Protein (AHRD V1)"; NbS00019604g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|500; (*GB) gi|359479098|ref|XP_002274209.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9MA50|PPR13_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1;; (*TAIR) AT1G05750.1 (e_value=0.0) | Symbols: PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1721523-1723025 FORWARD LENGTH=500;; (*ITAG) Solyc11g071370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51957107-51958630 transcript_region:SL2.40ch11:51957107..51958630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC25460329g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|1|1|4|0|297; (*GB) gi|2459815|gb|AAC28905.1| (e_value=0.0) polygalacturonase 4 [Solanum lycopersicum];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=4e-145) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=6e-147) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g096750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63877420-63878834 transcript_region:SL2.40ch12:63877420..63878834+ go_terms:GO:0005975 functional_description:"Polygalacturonase 4 (AHRD V1 ***- O22312_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00029824g0004.1 protein AED:0.08 eAED:0.08 QI:25|0.62|0.44|0.88|0.87|0.77|9|0|693; (*GB) gi|224139440|ref|XP_002323113.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9FG72|OPT1_ARATH (e_value=0.0) Oligopeptide transporter 1 OS=Arabidopsis thaliana GN=OPT1 PE=2 SV=1;; (*TAIR) AT5G55930.1 (e_value=0.0) | Symbols: ATOPT1, OPT1 | oligopeptide transporter 1 | chr5:22652988-22655827 FORWARD LENGTH=755;; (*ITAG) Solyc08g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62776752-62780190 transcript_region:SL2.40ch08:62776752..62780190+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00010763g0011.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.33|1|0.5|0.66|3|0|298; (*GB) gi|255552283|ref|XP_002517186.1| (e_value=2e-146) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q06136|KDSR_HUMAN (e_value=5e-52) 3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1;; (*TAIR) AT3G06060.1 (e_value=1e-138) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:1828296-1830160 REVERSE LENGTH=326;; (*ITAG) Solyc06g054340.1.1 (e_value=4e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33633622-33634588 transcript_region:SL2.40ch06:33633622..33634588- go_terms:GO:0004668 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A9B3A1_HERA2); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004668 NbS00010763g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|224053318|ref|XP_002297761.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|P13240|DR206_PEA (e_value=7e-12) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G58170.1 (e_value=3e-52) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:21536188-21536745 FORWARD LENGTH=185;; (*ITAG) Solyc06g054320.1.1 (e_value=2e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33626366-33626920 transcript_region:SL2.40ch06:33626366..33626920+ functional_description:"Disease resistance response (AHRD V1 ***- D7L1G4_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00041791g0004.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|0|0|2|0|449; (*GB) gi|159031805|dbj|BAF91874.1| (e_value=0.0) ornithine decarboxylase [Nicotiana benthamiana];; (*SWP) sp|P50134|DCOR_DATST (e_value=0.0) Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT5G11880.1 (e_value=3e-15) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr5:3827806-3829942 REVERSE LENGTH=489;; (*ITAG) Solyc04g082030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63427822-63429117 transcript_region:SL2.40ch04:63427822..63429117- go_terms:GO:0004586 functional_description:"Ornithine decarboxylase (AHRD V1 **** Q9SXF3_TOBAC); contains Interpro domain(s) IPR002433 Ornithine decarboxylase "; GO:0004586 NbS00009115g0011.1 protein AED:0.28 eAED:0.36 QI:0|0.83|0.42|1|0.5|0.42|7|0|318; (*GB) gi|9758135|dbj|BAB08627.1| (e_value=6e-146) MAP protein kinase [Arabidopsis thaliana];; (*SWP) sp|O22040|ANP1_ARATH (e_value=7e-64) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=1e-143) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc02g065110.2.1 (e_value=3e-170) genomic_reference:SL2.40ch02 gene_region:30847497-30852710 transcript_region:SL2.40ch02:30847497..30852710- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00009115g0012.1 protein AED:0.29 eAED:0.44 QI:0|0|0|1|0|0|3|0|316; (*ITAG) Solyc02g065110.2.1 (e_value=1e-28) genomic_reference:SL2.40ch02 gene_region:30847497-30852710 transcript_region:SL2.40ch02:30847497..30852710- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017607g0004.1 protein AED:0.09 eAED:0.09 QI:112|0.4|0.5|0.66|0.8|0.83|6|0|364; (*GB) gi|296088467|emb|CBI37458.3| (e_value=2e-97) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g075760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57043909-57049556 transcript_region:SL2.40ch08:57043909..57049556+ functional_description:"CYCLOPS (AHRD V1 ***- A7TUE1_MEDTR)"; NbS00017607g0008.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|0.5|0.33|3|507|360; (*GB) gi|388491004|gb|AFK33568.1| (e_value=2e-140) unknown [Lotus japonicus];; (*SWP) sp|Q94B60|CLPP4_ARATH (e_value=2e-134) ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1;; (*TAIR) AT5G45390.1 (e_value=2e-135) | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18396351-18397586 FORWARD LENGTH=292;; (*ITAG) Solyc08g075750.2.1 (e_value=4e-163) genomic_reference:SL2.40ch08 gene_region:57034106-57040896 transcript_region:SL2.40ch08:57034106..57040896+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A9PA38_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00017607g0010.1 protein AED:0.31 eAED:0.95 QI:14|0|0.25|1|0.33|0|4|0|273; (*GB) gi|296088470|emb|CBI37461.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C6S6|PPR67_ARATH (e_value=8e-54) Putative pentatricopeptide repeat-containing protein At1g31840 OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2;; (*TAIR) AT1G31840.2 (e_value=8e-63) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11424006-11426528 FORWARD LENGTH=811;; (*ITAG) Solyc11g005940.1.1 (e_value=5e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:757823-760342 transcript_region:SL2.40ch11:757823..760342- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL1_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017242g0010.1 protein AED:0.02 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|398; (*GB) gi|255587457|ref|XP_002534279.1| (e_value=2e-92) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12920.1 (e_value=2e-63) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr3:4122127-4123323 REVERSE LENGTH=335;; (*ITAG) Solyc02g069180.2.1 (e_value=1e-113) genomic_reference:SL2.40ch02 gene_region:33713714-33716151 transcript_region:SL2.40ch02:33713714..33716151+ functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY)"; NbS00006924g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|121; (*GB) gi|14210079|gb|AAK56924.1|AF368237_1 (e_value=4e-25) circadian clock coupling factor ZGT [Nicotiana tabacum];; (*SWP) sp|Q93ZT5|EDL3_ARATH (e_value=3e-22) EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1;; (*TAIR) AT3G63060.1 (e_value=3e-23) | Symbols: EDL3 | EID1-like 3 | chr3:23300638-23301456 REVERSE LENGTH=272;; (*ITAG) Solyc09g064820.1.1 (e_value=8e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57839262-57840080 transcript_region:SL2.40ch09:57839262..57840080- functional_description:"Circadian clock coupling factor ZGT (AHRD V1 ***- Q94FM9_TOBAC)"; NbS00025769g0001.1 protein AED:0.52 eAED:0.52 QI:0|0.33|0|0.75|1|1|4|0|103 NbS00018892g0008.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.2|0.75|0.8|5|0|255; (*ITAG) Solyc05g010220.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4406522-4407694 transcript_region:SL2.40ch05:4406522..4407694+ functional_description:"F-box family protein (AHRD V1 ***- D7L723_ARALY); contains Interpro domain(s) IPR006527 F-box associated "; NbS00018892g0007.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|2|0|1035; (*GB) gi|224125742|ref|XP_002319664.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FRS6|PXL1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1;; (*TAIR) AT1G08590.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:2718859-2721948 FORWARD LENGTH=1029;; (*ITAG) Solyc04g050170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44894101-44897749 transcript_region:SL2.40ch04:44894101..44897749+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018892g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|252; (*ITAG) Solyc05g010220.1.1 (e_value=5e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4406522-4407694 transcript_region:SL2.40ch05:4406522..4407694+ functional_description:"F-box family protein (AHRD V1 ***- D7L723_ARALY); contains Interpro domain(s) IPR006527 F-box associated "; NbS00006343g0001.1 protein AED:0.45 eAED:0.89 QI:231|0|0|1|1|1|4|0|125; (*GB) gi|255560667|ref|XP_002521347.1| (e_value=2e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G13990.2 (e_value=2e-20) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:4625708-4630383 REVERSE LENGTH=847;; (*ITAG) Solyc12g049230.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46080723-46092167 transcript_region:SL2.40ch12:46080723..46092167+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q69NN2_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00001494g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|224120976|ref|XP_002318466.1| (e_value=9e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT1G57680.2 (e_value=7e-15) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362;; (*ITAG) Solyc06g053230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32451213-32457177 transcript_region:SL2.40ch06:32451213..32457177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001494g0009.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.25|0.66|0.5|4|0|167 NbS00007951g0015.1 protein AED:0.24 eAED:0.24 QI:247|0|0.33|0.33|1|1|3|0|66 NbS00007951g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|302143962|emb|CBI23067.3| (e_value=9e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46690.1 (e_value=7e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr2:19180904-19181269 FORWARD LENGTH=121;; (*ITAG) Solyc03g082530.1.1 (e_value=3e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:46007641-46008009 transcript_region:SL2.40ch03:46007641..46008009- functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7M515_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00007951g0014.1 protein AED:0.06 eAED:0.06 QI:113|1|1|1|0.5|0.33|3|378|308; (*GB) gi|37147908|gb|AAQ88401.1| (e_value=2e-78) HD-ZIP [Capsicum annuum];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=7e-33) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.2 (e_value=6e-34) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=256;; (*ITAG) Solyc03g082550.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:46039117-46040348 transcript_region:SL2.40ch03:46039117..46040348+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- B8YIB0_MIRJA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00007951g0016.1 protein AED:0.16 eAED:0.16 QI:87|1|1|1|0.66|0.5|4|548|315; (*GB) gi|224118424|ref|XP_002317815.1| (e_value=8e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|A2Z3C4|6PGL4_ORYSI (e_value=2e-115) Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2;; (*TAIR) AT5G24400.1 (e_value=4e-114) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc03g082580.2.1 (e_value=7e-165) genomic_reference:SL2.40ch03 gene_region:46048220-46052563 transcript_region:SL2.40ch03:46048220..46052563+ go_terms:GO:0017057 functional_description:"Glucosamine-6-phosphate deaminase (AHRD V1 ***- NAGB_ACHLI); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00007951g0017.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|1|0|0.25|4|0|160; (*GB) gi|225455264|ref|XP_002273477.1| (e_value=2e-74) PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic-like [Vitis vinifera];; (*TAIR) AT5G53580.1 (e_value=5e-65) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:21765215-21766919 REVERSE LENGTH=365;; (*ITAG) Solyc03g082560.2.1 (e_value=3e-82) genomic_reference:SL2.40ch03 gene_region:46042023-46044930 transcript_region:SL2.40ch03:46042023..46044930+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase-like protein (AHRD V1 ***- Q56Y42_ARATH); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00025580g0004.1 protein AED:0.22 eAED:0.22 QI:710|1|0.9|1|0.88|0.8|10|0|454; (*GB) gi|225427599|ref|XP_002270781.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264895 [Vitis vinifera];; (*TAIR) AT4G19160.2 (e_value=2e-167) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10477772-10479947 FORWARD LENGTH=453;; (*ITAG) Solyc08g075520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56838057-56842836 transcript_region:SL2.40ch08:56838057..56842836- functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00010086g0007.1 protein AED:0.15 eAED:0.15 QI:132|0.90|0.91|0.91|0.90|0.83|12|0|488; (*GB) gi|255546075|ref|XP_002514097.1| (e_value=0.0) serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=8e-130) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.2 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=507;; (*ITAG) Solyc12g009010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2309966-2319229 transcript_region:SL2.40ch12:2309966..2319229+ go_terms:GO:0004711 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 **** B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00010086g0006.1 protein AED:0.18 eAED:0.18 QI:359|0.75|0.77|1|0.87|0.77|9|1560|372; (*GB) gi|7682432|gb|AAF67262.1|AF165186_1 (e_value=0.0) MAP kinase kinase [Nicotiana tabacum];; (*SWP) sp|Q9S7U9|M2K2_ARATH (e_value=6e-161) Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2;; (*TAIR) AT4G29810.1 (e_value=5e-162) | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363;; (*ITAG) Solyc12g009020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00002235g0012.1 protein AED:0.13 eAED:0.16 QI:0|0.4|0.33|1|1|0.83|6|0|359; (*GB) gi|147828316|emb|CAN75399.1| (e_value=2e-63) hypothetical protein VITISV_004495 [Vitis vinifera];; (*TAIR) AT1G53520.1 (e_value=5e-64) | Symbols: | Chalcone-flavanone isomerase family protein | chr1:19976485-19977915 REVERSE LENGTH=287;; (*ITAG) Solyc07g062030.2.1 (e_value=1e-100) genomic_reference:SL2.40ch07 gene_region:62098170-62101182 transcript_region:SL2.40ch07:62098170..62101182+ go_terms:GO:0042398,GO:0009813 functional_description:"Chalcone--flavonone isomerase (AHRD V1 ***- B6SK22_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398,GO:0009813 NbS00002235g0011.1 protein AED:0.24 eAED:0.24 QI:223|0.87|1|1|0.75|0.77|9|0|591; (*GB) gi|356554738|ref|XP_003545700.1| (e_value=3e-174) PREDICTED: uncharacterized protein LOC100803169 [Glycine max];; (*TAIR) AT1G78540.1 (e_value=1e-135) | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B | chr1:29541244-29544574 REVERSE LENGTH=668;; (*ITAG) Solyc07g062050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62105241-62113721 transcript_region:SL2.40ch07:62105241..62113721- go_terms:GO:0005515 functional_description:"Signal transducer and activator of transcription B (AHRD V1 *-*- STATB_DICDI); contains Interpro domain(s) IPR000980 SH2 motif "; GO:0005515 NbS00002235g0013.1 protein AED:0.61 eAED:0.61 QI:25|0|0.33|0.66|0.5|0.66|3|0|100; (*GB) gi|388522107|gb|AFK49115.1| (e_value=6e-21) unknown [Medicago truncatula];; (*SWP) sp|Q9SYM9|Y1853_ARATH (e_value=2e-21) Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana GN=At1g78530 PE=2 SV=1;; (*TAIR) AT1G78530.1 (e_value=2e-22) | Symbols: | Protein kinase superfamily protein | chr1:29539274-29540681 REVERSE LENGTH=355;; (*ITAG) Solyc07g062040.2.1 (e_value=4e-23) genomic_reference:SL2.40ch07 gene_region:62101108-62102746 transcript_region:SL2.40ch07:62101108..62102746- go_terms:GO:0005515,GO:0004674 functional_description:"ATP-binding/protein serine/threonine kinase (AHRD V1 **** C6ZRM4_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00004663g0005.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|1|1|2|0|964; (*GB) gi|224091833|ref|XP_002309364.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUI0|Y2241_ARATH (e_value=0.0) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=2 SV=1;; (*TAIR) AT2G24130.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr2:10258148-10261220 FORWARD LENGTH=980;; (*ITAG) Solyc07g005920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:752031-755067 transcript_region:SL2.40ch07:752031..755067- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00019475g0005.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|255; (*ITAG) Solyc08g080980.2.1 (e_value=4e-92) genomic_reference:SL2.40ch08 gene_region:61272581-61274489 transcript_region:SL2.40ch08:61272581..61274489- functional_description:"Unknown Protein (AHRD V1)"; NbS00019475g0006.1 protein AED:0.12 eAED:0.12 QI:403|0.8|0.83|0.83|0.6|0.5|6|0|187; (*GB) gi|359474011|ref|XP_003631389.1| (e_value=3e-34) PREDICTED: uncharacterized protein LOC100261599 [Vitis vinifera];; (*TAIR) AT1G63490.1 (e_value=2e-25) | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr1:23544938-23551946 REVERSE LENGTH=1116;; (*ITAG) Solyc08g081000.2.1 (e_value=2e-69) genomic_reference:SL2.40ch08 gene_region:61280219-61304350 transcript_region:SL2.40ch08:61280219..61304350- go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"Lysine-specific demethylase 5D (AHRD V1 *--- KDM5D_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634,GO:0008270,GO:0005622 NbS00031896g0014.1 protein AED:0.08 eAED:0.08 QI:74|0.83|0.85|1|0.66|0.71|7|212|196; (*GB) gi|359478461|ref|XP_002285716.2| (e_value=6e-114) PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Vitis vinifera];; (*SWP) sp|Q84MC2|LOG8_ARATH (e_value=3e-95) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1;; (*TAIR) AT5G11950.2 (e_value=3e-96) | Symbols: | Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216;; (*ITAG) Solyc01g005680.2.1 (e_value=1e-122) genomic_reference:SL2.40ch01 gene_region:472491-477313 transcript_region:SL2.40ch01:472491..477313+ functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00031896g0003.1 protein AED:0.15 eAED:0.16 QI:0|1|0.5|1|0.66|0.5|4|456|476; (*GB) gi|255544912|ref|XP_002513517.1| (e_value=9e-163) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q91X20|ASH2L_MOUSE (e_value=1e-45) Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus musculus GN=Ash2l PE=1 SV=1;; (*TAIR) AT1G51450.1 (e_value=4e-159) | Symbols: TRO | TRAUCO | chr1:19074399-19076220 FORWARD LENGTH=509;; (*ITAG) Solyc11g065370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47895415-47898879 transcript_region:SL2.40ch11:47895415..47898879- functional_description:"Set1/Ash2 histone methyltransferase complex subunit ASH2 (AHRD V1 *-*- ASH2L_MOUSE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; NbS00031896g0004.1 protein AED:0.05 eAED:0.07 QI:80|1|0.5|1|0|0|2|0|604; (*GB) gi|255572288|ref|XP_002527083.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G08810.1 (e_value=0.0) | Symbols: SUB1 | calcium ion binding | chr4:5616204-5617862 REVERSE LENGTH=552;; (*ITAG) Solyc01g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:478540-480386 transcript_region:SL2.40ch01:478540..480386- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00031896g0001.1 protein AED:0.15 eAED:0.15 QI:154|0.66|0.5|1|0.66|0.5|4|0|600; (*GB) gi|302142801|emb|CBI20096.3| (e_value=2e-67) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:480843-483447 transcript_region:SL2.40ch01:480843..483447- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FI74_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00031896g0021.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0|0|3|0|403; (*GB) gi|225434845|ref|XP_002280577.1| (e_value=1e-118) PREDICTED: uncharacterized protein LOC100244977 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=8e-96) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47924448-47926730 transcript_region:SL2.40ch11:47924448..47926730+ functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbC25948449g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00012782g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.6|1|1|1|5|0|334; (*GB) gi|225453146|ref|XP_002272414.1| (e_value=3e-76) PREDICTED: putative transcription factor bHLH086 [Vitis vinifera];; (*SWP) sp|Q9C707|BH083_ARATH (e_value=2e-57) Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1;; (*TAIR) AT1G66470.1 (e_value=1e-58) | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:24795326-24796598 FORWARD LENGTH=298;; (*ITAG) Solyc02g091440.1.1 (e_value=3e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47312026-47313724 transcript_region:SL2.40ch02:47312026..47313724- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00012782g0005.1 protein AED:0.30 eAED:0.68 QI:0|0|0|1|0|0|2|0|62 NbS00053720g0003.1 protein AED:0.02 eAED:0.02 QI:164|1|1|1|1|1|2|205|198; (*GB) gi|350539962|ref|NP_001234848.1| (e_value=2e-65) ethylene response factor 1 [Solanum lycopersicum];; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=3e-50) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1;; (*TAIR) AT5G25190.1 (e_value=2e-51) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:8707007-8707655 REVERSE LENGTH=181;; (*ITAG) Solyc06g065820.2.1 (e_value=4e-68) genomic_reference:SL2.40ch06 gene_region:37639581-37641049 transcript_region:SL2.40ch06:37639581..37641049- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00020468g0011.1 protein AED:0.35 eAED:0.37 QI:0|0.66|0.75|1|1|1|4|342|127; (*GB) gi|192910796|gb|ACF06506.1| (e_value=4e-61) RNA polymerase [Elaeis guineensis];; (*SWP) sp|Q923G2|RPAB3_MOUSE (e_value=5e-30) DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=2 SV=3;; (*TAIR) AT3G59600.1 (e_value=3e-53) | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146;; (*ITAG) Solyc03g031690.2.1 (e_value=6e-74) genomic_reference:SL2.40ch03 gene_region:8431329-8435751 transcript_region:SL2.40ch03:8431329..8435751- go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 ***- B9EM78_SALSA); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515 NbS00020468g0015.1 protein AED:0.39 eAED:0.43 QI:0|0.06|0|0.75|0.2|0.43|16|0|655; (*GB) gi|227053577|gb|ACP18876.1| (e_value=2e-122) subtilisin-like serine protease [Carica papaya];; (*SWP) sp|O65351|SUBL_ARATH (e_value=6e-61) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=3e-114) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=4e-120) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00020468g0006.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc07g056170.2.1 (e_value=3e-14) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00020468g0101.1 protein AED:0.23 eAED:0.23 QI:426|1|1|1|0.77|0.8|10|376|450 NbS00019189g0014.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|388; (*GB) gi|255564685|ref|XP_002523337.1| (e_value=4e-121) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=4e-58) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT1G01300.1 (e_value=1e-110) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:117065-118522 FORWARD LENGTH=485;; (*ITAG) Solyc10g009410.1.1 (e_value=7e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3472716-3474092 transcript_region:SL2.40ch10:3472716..3474092+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00019189g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|1|1|3|0|301; (*GB) gi|7339658|dbj|BAA92894.1| (e_value=0.0) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=1e-62) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT1G01280.1 (e_value=9e-149) | Symbols: CYP703A2, CYP703 | cytochrome P450, family 703, subfamily A, polypeptide 2 | chr1:112290-113905 FORWARD LENGTH=510;; (*ITAG) Solyc10g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3453235-3456027 transcript_region:SL2.40ch10:3453235..3456027+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00019189g0003.1 protein AED:0.43 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|7339658|dbj|BAA92894.1| (e_value=4e-31) cytochrome P450 [Petunia x hybrida];; (*TAIR) AT1G01280.1 (e_value=5e-30) | Symbols: CYP703A2, CYP703 | cytochrome P450, family 703, subfamily A, polypeptide 2 | chr1:112290-113905 FORWARD LENGTH=510;; (*ITAG) Solyc10g009390.2.1 (e_value=6e-34) genomic_reference:SL2.40ch10 gene_region:3453235-3456027 transcript_region:SL2.40ch10:3453235..3456027+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbC23943380g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=3e-23) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P86137|NLTP1_ACTDE (e_value=3e-20) Non-specific lipid-transfer protein 1 OS=Actinidia deliciosa PE=1 SV=2;; (*TAIR) AT4G33355.2 (e_value=2e-16) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc01g090360.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00010883g0013.1 protein AED:0.06 eAED:0.06 QI:39|0.66|0.5|1|0.33|0.5|4|0|168; (*GB) gi|255571951|ref|XP_002526917.1| (e_value=1e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G41200.1 (e_value=4e-38) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17171657-17172929 FORWARD LENGTH=161;; (*ITAG) Solyc03g058440.1.1 (e_value=8e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:21915390-21915587 transcript_region:SL2.40ch03:21915390..21915587+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010883g0018.1 protein AED:0.08 eAED:0.12 QI:0|0.66|0.6|1|0.66|0.6|10|0|830; (*GB) gi|255571949|ref|XP_002526916.1| (e_value=0.0) phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=0.0) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc10g078460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59606606-59609733 transcript_region:SL2.40ch10:59606606..59609733+ go_terms:GO:0016308,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308,GO:0046488 NbS00010883g0015.1 protein AED:0.14 eAED:0.26 QI:199|0.85|0.66|0.93|0.71|0.66|15|0|599; (*GB) gi|225458860|ref|XP_002283369.1| (e_value=0.0) PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q921Q3|ALG1_MOUSE (e_value=8e-87) Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Mus musculus GN=Alg1 PE=2 SV=3;; (*TAIR) AT1G16570.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:5670763-5673423 REVERSE LENGTH=465;; (*ITAG) Solyc10g078480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59616092-59622007 transcript_region:SL2.40ch10:59616092..59622007- go_terms:GO:0009058 functional_description:"Chitobiosyldiphosphodolichol beta-mannosyltransferase (AHRD V1 ***- B0WIW8_CULQU); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00010883g0001.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|1|1|2|0|206; (*GB) gi|147854660|emb|CAN80240.1| (e_value=5e-60) hypothetical protein VITISV_011821 [Vitis vinifera];; (*TAIR) AT2G33260.1 (e_value=1e-53) | Symbols: | Tryptophan/tyrosine permease | chr2:14100840-14102252 REVERSE LENGTH=436;; (*ITAG) Solyc10g078470.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59610679-59612360 transcript_region:SL2.40ch10:59610679..59612360- go_terms:GO:0005302 functional_description:"Tyrosine-specific transport protein (AHRD V1 *-** D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; GO:0005302 NbS00010883g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|75 NbS00010883g0003.1 protein AED:0.41 eAED:0.60 QI:0|0.5|0|1|1|1|3|0|124; (*GB) gi|255587821|ref|XP_002534408.1| (e_value=2e-48) small nuclear ribonucleoprotein f, putative [Ricinus communis];; (*SWP) sp|P62313|LSM6_MOUSE (e_value=1e-38) U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6 PE=2 SV=1;; (*TAIR) AT2G43810.2 (e_value=1e-47) | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:18149725-18150879 FORWARD LENGTH=91;; (*ITAG) Solyc10g078450.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59602700-59602925 transcript_region:SL2.40ch10:59602700..59602925+ functional_description:"U6 snRNA-associated Sm-like protein LSm6 (AHRD V1 ***- C1C4E6_RANCA); contains Interpro domain(s) IPR001163 Like-Sm ribonucleoprotein, core "; NbS00003102g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.6|1|1|5|0|300; (*GB) gi|159517157|gb|ABW97846.1| (e_value=1e-37) MYC [Nicotiana tabacum];; (*ITAG) Solyc09g098110.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00037133g0009.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.4|1|0|0|5|401|560; (*GB) gi|255568687|ref|XP_002525315.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q8RW96|2A5G_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2;; (*TAIR) AT4G15415.1 (e_value=0.0) | Symbols: ATB' GAMMA | Protein phosphatase 2A regulatory B subunit family protein | chr4:8817707-8819349 FORWARD LENGTH=522;; (*ITAG) Solyc07g049220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56832481-56838208 transcript_region:SL2.40ch07:56832481..56838208+ go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_HUMAN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00037133g0003.1 protein AED:0.32 eAED:0.33 QI:179|0|0.5|1|0|0.5|2|0|137; (*GB) gi|255568685|ref|XP_002525314.1| (e_value=5e-63) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G32650.2 (e_value=2e-61) | Symbols: | RmlC-like cupins superfamily protein | chr2:13851547-13851966 FORWARD LENGTH=139;; (*ITAG) Solyc07g049230.1.1 (e_value=8e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56839040-56839471 transcript_region:SL2.40ch07:56839040..56839471- functional_description:"Enzyme of the cupin superfamily (AHRD V1 ***- B6TP17_MAIZE); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; NbS00042390g0019.1 protein AED:0.19 eAED:0.19 QI:57|0.62|0.33|1|0.87|0.77|9|0|692; (*GB) gi|255572666|ref|XP_002527266.1| (e_value=0.0) lipoxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LUW0|LOX5_ARATH (e_value=0.0) Linoleate 9S-lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2;; (*TAIR) AT3G22400.1 (e_value=0.0) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc09g055900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41664813-41667958 transcript_region:SL2.40ch09:41664813..41667958+ go_terms:GO:0046872,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- A5C523_VITVI); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0046872,GO:0055114 NbS00042390g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|359494760|ref|XP_002266441.2| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100267033 [Vitis vinifera];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=5e-69) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=4e-70) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc09g055880.1.1 (e_value=9e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:41606762-41607214 transcript_region:SL2.40ch09:41606762..41607214- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00042390g0020.1 protein AED:0.05 eAED:0.05 QI:116|1|0.75|1|0.33|0.75|4|0|454; (*GB) gi|225448146|ref|XP_002263852.1| (e_value=2e-125) PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=4e-90) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G25440.1 (e_value=3e-91) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9223998-9225505 FORWARD LENGTH=444;; (*ITAG) Solyc06g082990.2.1 (e_value=1e-173) genomic_reference:SL2.40ch06 gene_region:44864363-44871826 transcript_region:SL2.40ch06:44864363..44871826- go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00042390g0022.1 protein AED:0.19 eAED:0.23 QI:81|0.62|0.44|0.88|0.75|0.77|9|0|491; (*GB) gi|255572662|ref|XP_002527264.1| (e_value=8e-168) ribonuclease, putative [Ricinus communis];; (*SWP) sp|Q8W4C3|PARNL_ARATH (e_value=1e-135) Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1;; (*TAIR) AT3G25430.1 (e_value=7e-137) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:9221204-9223700 FORWARD LENGTH=618;; (*ITAG) Solyc09g055920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41770937-41775897 transcript_region:SL2.40ch09:41770937..41775897- go_terms:GO:0003676,GO:0005634 functional_description:"Poly(A)-specific ribonuclease PARN-like protein (AHRD V1 *-*- D0N750_PHYIN); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0003676,GO:0005634 NbS00042390g0026.1 protein AED:0.34 eAED:0.41 QI:0|0.58|0.53|1|0.58|0.84|13|0|531; (*GB) gi|255572664|ref|XP_002527265.1| (e_value=1e-179) fad oxidoreductase, putative [Ricinus communis];; (*SWP) sp|C3LT39|DADA_VIBCM (e_value=7e-15) D-amino acid dehydrogenase small subunit OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dadA PE=3 SV=1;; (*TAIR) AT5G48440.1 (e_value=8e-168) | Symbols: | FAD-dependent oxidoreductase family protein | chr5:19629932-19632588 REVERSE LENGTH=459;; (*ITAG) Solyc09g055910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41669033-41676342 transcript_region:SL2.40ch09:41669033..41676342- go_terms:GO:0016491 functional_description:"D-amino acid dehydrogenase small subunit (AHRD V1 ***- DADA_NEIMF); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00031040g0007.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0.5|2|0|114; (*GB) gi|357447681|ref|XP_003594116.1| (e_value=2e-33) hypothetical protein MTR_2g021580 [Medicago truncatula];; (*TAIR) AT3G19430.1 (e_value=9e-29) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc11g073150.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53307462-53308534 transcript_region:SL2.40ch11:53307462..53308534+ go_terms:GO:0016042 functional_description:"Root cap protein 3 (Fragment) (AHRD V1 ***- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; GO:0016042 NbS00059567g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.75|0|0|4|0|295; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-37) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00059567g0004.1 protein AED:0.64 eAED:0.65 QI:0|0|0|0.5|0|0|2|0|81 NbS00003483g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.5|1|1|1|6|0|243; (*GB) gi|68165948|gb|AAY87906.1| (e_value=7e-122) caleosin B [Sesamum indicum];; (*SWP) sp|Q9SQ57|PXG_SESIN (e_value=4e-121) Peroxygenase OS=Sesamum indicum GN=SOP1 PE=1 SV=1;; (*TAIR) AT4G26740.1 (e_value=2e-111) | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473791-13475278 REVERSE LENGTH=245;; (*ITAG) Solyc12g096930.1.1 (e_value=1e-150) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63988881-63992407 transcript_region:SL2.40ch12:63988881..63992407+ functional_description:"Caleosin (AHRD V1 ***- Q9SQ57_SESIN); contains Interpro domain(s) IPR007736 Caleosin related "; NbS00003483g0006.1 protein AED:0.07 eAED:0.17 QI:36|0.33|0.25|0.75|0.33|0.5|4|0|437; (*GB) gi|356574734|ref|XP_003555500.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100813806 [Glycine max];; (*TAIR) AT1G04500.1 (e_value=3e-50) | Symbols: | CCT motif family protein | chr1:1221757-1224235 REVERSE LENGTH=386;; (*ITAG) Solyc12g096940.1.1 (e_value=5e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63994122-63995876 transcript_region:SL2.40ch12:63994122..63995876- functional_description:"CCT motif family protein (AHRD V1 *-*- B6TX69_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; NbS00016411g0016.1 protein AED:0.18 eAED:0.18 QI:234|1|1|1|0.87|0.77|9|355|242; (*GB) gi|225441260|ref|XP_002274343.1| (e_value=5e-147) PREDICTED: tubulin-specific chaperone B isoform 1 [Vitis vinifera];; (*SWP) sp|Q20728|TBCB_CAEEL (e_value=9e-41) Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3 PE=1 SV=1;; (*TAIR) AT3G10220.1 (e_value=3e-132) | Symbols: | tubulin folding cofactor B | chr3:3161977-3164037 FORWARD LENGTH=243;; (*ITAG) Solyc03g098170.2.1 (e_value=1e-165) genomic_reference:SL2.40ch03 gene_region:53948518-53955412 transcript_region:SL2.40ch03:53948518..53955412- go_terms:GO:0043014 functional_description:"Tubulin folding cofactor B (AHRD V1 **-* D7L8W6_ARALY); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; GO:0043014 NbS00016411g0021.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|0|0.5|2|0|69 NbS00016411g0025.1 protein AED:0.17 eAED:0.18 QI:43|0.37|0.33|1|0.62|0.55|9|0|1136; (*GB) gi|374095601|gb|AEY85028.1| (e_value=0.0) putative ATP-binding protein [Camellia sinensis];; (*SWP) sp|Q54BC9|DYRK2_DICDI (e_value=1e-38) Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1;; (*TAIR) AT1G73460.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27620122-27624899 FORWARD LENGTH=1169;; (*ITAG) Solyc03g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53924547-53934622 transcript_region:SL2.40ch03:53924547..53934622+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016411g0024.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|0.66|0.57|7|0|663; (*GB) gi|297742796|emb|CBI35476.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9H7Z3|CN102_HUMAN (e_value=8e-27) UPF0614 protein C14orf102 OS=Homo sapiens GN=C14orf102 PE=1 SV=3;; (*TAIR) AT3G17740.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr3:6068003-6072814 REVERSE LENGTH=1149;; (*ITAG) Solyc03g098160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53935244-53947764 transcript_region:SL2.40ch03:53935244..53947764+ go_terms:GO:0005975,GO:0005622 functional_description:"Chromosome 14 open reading frame 102 (AHRD V1 *--- Q4G0A7_HUMAN); contains Interpro domain(s) IPR013633 Protein of unknown function DUF1740 "; GO:0005975,GO:0005622 NbS00016411g0018.1 protein AED:0.34 eAED:0.36 QI:11|1|0.5|1|1|1|2|0|357; (*GB) gi|225470999|ref|XP_002266638.1| (e_value=2e-81) PREDICTED: UPF0614 protein C14orf102-like [Vitis vinifera];; (*TAIR) AT3G17712.3 (e_value=5e-69) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17740.1). | chr3:6056983-6059913 FORWARD LENGTH=769;; (*ITAG) Solyc03g098160.2.1 (e_value=5e-164) genomic_reference:SL2.40ch03 gene_region:53935244-53947764 transcript_region:SL2.40ch03:53935244..53947764+ go_terms:GO:0005975,GO:0005622 functional_description:"Chromosome 14 open reading frame 102 (AHRD V1 *--- Q4G0A7_HUMAN); contains Interpro domain(s) IPR013633 Protein of unknown function DUF1740 "; GO:0005975,GO:0005622 NbS00016411g0022.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|241; (*GB) gi|53749483|gb|AAU90336.1| (e_value=3e-45) F-box protein interaction domain containing protein [Solanum demissum];; (*ITAG) Solyc03g019970.2.1 (e_value=3e-46) genomic_reference:SL2.40ch03 gene_region:6843958-6845939 transcript_region:SL2.40ch03:6843958..6845939- functional_description:"F-box protein interaction domain containing protein (AHRD V1 ***- Q60D10_SOLDE); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00038132g0004.1 protein AED:0.21 eAED:0.22 QI:405|0.94|0.84|1|0.83|0.84|19|0|731; (*GB) gi|297743976|emb|CBI36946.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NSI6|BRWD1_HUMAN (e_value=2e-67) Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4;; (*TAIR) AT2G47410.1 (e_value=0.0) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr2:19449133-19456991 FORWARD LENGTH=1520;; (*ITAG) Solyc01g079510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71069631-71090760 transcript_region:SL2.40ch01:71069631..71090760+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein-like (AHRD V1 *--- Q9FGX4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00001063g0002.1 protein AED:0.40 eAED:0.70 QI:0|0|0|0.66|0.5|0.33|3|0|98; (*GB) gi|225460887|ref|XP_002278573.1| (e_value=2e-16) PREDICTED: uncharacterized membrane protein yuiD [Vitis vinifera];; (*TAIR) AT1G67600.1 (e_value=5e-18) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr1:25336701-25337455 REVERSE LENGTH=163;; (*ITAG) Solyc10g006140.2.1 (e_value=4e-23) genomic_reference:SL2.40ch10 gene_region:871373-877188 transcript_region:SL2.40ch10:871373..877188+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 **-- B6SYG4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00024819g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.9|1|1|1|1|11|398|324; (*GB) gi|1169586|sp|P46276.1|F16P2_SOLTU (e_value=0.0) RecName: Full=Fructose-1,6-bisphosphatase, cytosolic; Short=FBPase; AltName: Full=CY-F1; AltName: Full=D-fructose-1,6-bisphosphate 1-phosphohydrolase;; (*SWP) sp|P46276|F16P2_SOLTU (e_value=0.0) Fructose-1,6-bisphosphatase, cytosolic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G43670.1 (e_value=0.0) | Symbols: | Inositol monophosphatase family protein | chr1:16468184-16470347 FORWARD LENGTH=341;; (*ITAG) Solyc04g071340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55860635-55865238 transcript_region:SL2.40ch04:55860635..55865238+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** D3PE46_DEFDS); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0042132 NbS00061785g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.66|0|0.33|3|0|221; (*GB) gi|296082490|emb|CBI21495.3| (e_value=5e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=4e-12) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc04g072550.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00061785g0003.1 protein AED:0.58 eAED:0.72 QI:0|0|0|0.66|0|0|3|0|62 NbS00023425g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.85|0.87|1|0.85|1|8|534|196; (*GB) gi|356508564|ref|XP_003523025.1| (e_value=2e-86) PREDICTED: protein SET-like [Glycine max];; (*SWP) sp|Q01105|SET_HUMAN (e_value=4e-40) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G18800.1 (e_value=3e-83) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc03g116170.2.1 (e_value=2e-96) genomic_reference:SL2.40ch03 gene_region:59709189-59714932 transcript_region:SL2.40ch03:59709189..59714932+ go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00028521g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|225428586|ref|XP_002281132.1| (e_value=8e-155) PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera];; (*SWP) sp|Q9XIM8|PP155_ARATH (e_value=6e-132) Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1;; (*TAIR) AT2G15980.1 (e_value=5e-133) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6951349-6952845 REVERSE LENGTH=498;; (*ITAG) Solyc10g051010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46846396-46847877 transcript_region:SL2.40ch10:46846396..46847877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00050144g0002.1 protein AED:0.21 eAED:0.32 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|356551355|ref|XP_003544041.1| (e_value=5e-23) PREDICTED: uncharacterized protein LOC100792746 [Glycine max];; (*TAIR) AT1G76980.1 (e_value=1e-22) | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28926466-28927242 REVERSE LENGTH=258;; (*ITAG) Solyc06g059860.2.1 (e_value=3e-34) genomic_reference:SL2.40ch06 gene_region:34148058-34150076 transcript_region:SL2.40ch06:34148058..34150076+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009560g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.55|0.6|0.9|0.22|0.2|10|848|344; (*GB) gi|317106624|dbj|BAJ53130.1| (e_value=7e-166) JHL05D22.1 [Jatropha curcas];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=6e-139) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT4G00230.1 (e_value=5e-140) | Symbols: XSP1 | xylem serine peptidase 1 | chr4:93935-97289 FORWARD LENGTH=749;; (*ITAG) Solyc01g091930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77226189-77231536 transcript_region:SL2.40ch01:77226189..77231536- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like serine protease (AHRD V1 **-- Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00009560g0010.1 protein AED:0.26 eAED:0.37 QI:0|0.2|0.16|1|0.2|0.16|6|0|401; (*GB) gi|57013896|ref|YP_173370.1| (e_value=4e-67) hypothetical protein NitaMp023 [Nicotiana tabacum];; (*SWP) sp|Q8VYD9|CAF1M_ARATH (e_value=7e-29) CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1;; (*TAIR) AT4G31010.2 (e_value=2e-30) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr4:15106708-15108038 FORWARD LENGTH=341;; (*ITAG) Solyc01g091940.2.1 (e_value=6e-47) genomic_reference:SL2.40ch01 gene_region:77231547-77235545 transcript_region:SL2.40ch01:77231547..77235545+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00009560g0011.1 protein AED:0.40 eAED:0.42 QI:0|0.33|0.25|1|0.33|0.25|4|0|161; (*GB) gi|225453847|ref|XP_002272563.1| (e_value=9e-77) PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera];; (*SWP) sp|Q6Z4U2|CAF1M_ORYSJ (e_value=1e-69) CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1;; (*TAIR) AT4G31010.1 (e_value=2e-68) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr4:15106708-15108446 FORWARD LENGTH=405;; (*ITAG) Solyc01g091940.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:77231547-77235545 transcript_region:SL2.40ch01:77231547..77235545+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00059114g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|1|1|4|0|256; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=4e-129) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=1e-130) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=2e-95) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=7e-132) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00017388g0014.1 protein AED:0.11 eAED:0.11 QI:204|1|0.6|1|0.5|0.4|5|427|246; (*GB) gi|356560909|ref|XP_003548729.1| (e_value=8e-51) PREDICTED: uncharacterized protein LOC100780719 [Glycine max];; (*TAIR) AT3G07150.1 (e_value=3e-51) | Symbols: | unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2263806-2264576 REVERSE LENGTH=199;; (*ITAG) Solyc09g059950.2.1 (e_value=4e-87) genomic_reference:SL2.40ch09 gene_region:52538523-52540924 transcript_region:SL2.40ch09:52538523..52540924+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017388g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.6|0.9|0.77|0.8|10|0|569; (*GB) gi|255570661|ref|XP_002526285.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*TAIR) AT1G15060.1 (e_value=0.0) | Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:5184053-5186856 REVERSE LENGTH=578;; (*ITAG) Solyc09g059670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50659801-50664749 transcript_region:SL2.40ch09:50659801..50664749- go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold-1 (AHRD V1 *--- Q2IHF4_ANADE); contains Interpro domain(s) IPR016969 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 "; GO:0006508 NbS00017388g0011.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|0.66|3|0|519; (*GB) gi|225436888|ref|XP_002273727.1| (e_value=0.0) PREDICTED: GPI transamidase component PIG-T-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8BXQ2|PIGT_MOUSE (e_value=2e-56) GPI transamidase component PIG-T OS=Mus musculus GN=Pigt PE=1 SV=2;; (*TAIR) AT3G07140.2 (e_value=0.0) | Symbols: | GPI transamidase component Gpi16 subunit family protein | chr3:2261278-2263632 FORWARD LENGTH=643;; (*ITAG) Solyc09g059960.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:52541072-52545592 transcript_region:SL2.40ch09:52541072..52545592- go_terms:GO:0005515,GO:0003923 functional_description:"GPI transamidase component GPI16 (AHRD V1 **** C0SJI2_PARBP); contains Interpro domain(s) IPR007245 Gpi16 subunit, GPI transamidase component "; GO:0005515,GO:0003923 NbS00023380g0006.1 protein AED:0.28 eAED:0.28 QI:143|0.88|1|1|0.77|0.8|10|242|380; (*GB) gi|225449196|ref|XP_002279261.1| (e_value=2e-156) PREDICTED: uncharacterized protein YKR070W [Vitis vinifera];; (*SWP) sp|Q91WM2|CECR5_MOUSE (e_value=2e-40) Cat eye syndrome critical region protein 5 homolog OS=Mus musculus GN=Cecr5 PE=2 SV=1;; (*TAIR) AT3G45740.1 (e_value=6e-145) | Symbols: | hydrolase family protein / HAD-superfamily protein | chr3:16790830-16793280 FORWARD LENGTH=376;; (*ITAG) Solyc06g075540.2.1 (e_value=8e-141) genomic_reference:SL2.40ch06 gene_region:43294894-43300401 transcript_region:SL2.40ch06:43294894..43300401+ go_terms:GO:0008808 functional_description:"Phosphatidyl synthase (AHRD V1 **-* B2WIU8_PYRTR); contains Interpro domain(s) IPR006353 HAD-superfamily hydrolase, subfamily IIA, CECR5 "; GO:0008808 NbS00024728g0003.1 protein AED:0.11 eAED:0.11 QI:451|0.8|0.66|1|0.8|1|6|0|339; (*GB) gi|297742035|emb|CBI33822.3| (e_value=8e-161) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2HJ19|F108A_BOVIN (e_value=6e-57) Abhydrolase domain-containing protein FAM108A OS=Bos taurus GN=FAM108A PE=2 SV=1;; (*TAIR) AT1G32190.1 (e_value=4e-138) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:11593059-11595731 REVERSE LENGTH=422;; (*ITAG) Solyc08g076350.2.1 (e_value=2e-180) genomic_reference:SL2.40ch08 gene_region:57476093-57483705 transcript_region:SL2.40ch08:57476093..57483705- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 *--- C0HAS5_SALSA)"; NbS00042001g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|400; (*GB) gi|225442507|ref|XP_002284028.1| (e_value=1e-105) PREDICTED: GATA transcription factor 9 [Vitis vinifera];; (*SWP) sp|P69781|GAT12_ARATH (e_value=4e-69) GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1;; (*TAIR) AT5G25830.1 (e_value=3e-70) | Symbols: GATA12 | GATA transcription factor 12 | chr5:9004398-9005502 REVERSE LENGTH=331;; (*ITAG) Solyc03g120890.2.1 (e_value=5e-147) genomic_reference:SL2.40ch03 gene_region:63175276-63176950 transcript_region:SL2.40ch03:63175276..63176950- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00030956g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|206; (*GB) gi|225442367|ref|XP_002276490.1| (e_value=3e-105) PREDICTED: uncharacterized protein LOC100266878 [Vitis vinifera];; (*TAIR) AT3G21310.1 (e_value=2e-102) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:7497774-7499011 FORWARD LENGTH=383;; (*ITAG) Solyc03g121280.2.1 (e_value=2e-125) genomic_reference:SL2.40ch03 gene_region:63487613-63490561 transcript_region:SL2.40ch03:63487613..63490561- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00030956g0015.1 protein AED:0.25 eAED:0.25 QI:155|1|0.90|1|0.9|0.81|11|546|245; (*GB) gi|77999283|gb|ABB16988.1| (e_value=3e-107) RWD domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q9CQK7|RWDD1_MOUSE (e_value=2e-16) RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1;; (*TAIR) AT1G51730.1 (e_value=2e-95) | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19186812-19188638 REVERSE LENGTH=252;; (*ITAG) Solyc03g121310.2.1 (e_value=4e-97) genomic_reference:SL2.40ch03 gene_region:63499998-63504830 transcript_region:SL2.40ch03:63499998..63504830- go_terms:GO:0005515 functional_description:"RWD domain-containing protein (AHRD V1 ***- Q38HU0_SOLTU); contains Interpro domain(s) IPR006575 RWD "; GO:0005515 NbS00030956g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0.5|0.66|3|0|185; (*GB) gi|224120044|ref|XP_002318228.1| (e_value=5e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|P18674|LECA_MACPO (e_value=2e-18) Agglutinin alpha chain OS=Maclura pomifera PE=1 SV=2;; (*TAIR) AT1G73040.1 (e_value=1e-43) | Symbols: | Mannose-binding lectin superfamily protein | chr1:27475159-27475777 REVERSE LENGTH=176;; (*ITAG) Solyc03g121300.2.1 (e_value=2e-76) genomic_reference:SL2.40ch03 gene_region:63498298-63499734 transcript_region:SL2.40ch03:63498298..63499734+ functional_description:"Myrosinase-binding protein 2 (AHRD V1 **-- D7KIN1_ARALY); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00030956g0019.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.75|1|1|1|4|0|397; (*GB) gi|255549684|ref|XP_002515893.1| (e_value=0.0) IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis];; (*SWP) sp|O04373|ILL4_ARATH (e_value=0.0) IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2;; (*TAIR) AT1G51760.1 (e_value=0.0) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc03g121270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63482883-63487287 transcript_region:SL2.40ch03:63482883..63487287+ go_terms:GO:0010179 functional_description:"IAA-amino acid hydrolase (AHRD V1 **** D5FTH2_POPTO); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00030956g0013.1 protein AED:0.36 eAED:0.36 QI:0|1|0.33|1|1|1|3|0|229; (*GB) gi|255549680|ref|XP_002515891.1| (e_value=4e-30) hypothetical protein RCOM_1485780 [Ricinus communis];; (*ITAG) Solyc03g121290.2.1 (e_value=1e-89) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030956g0018.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|0|0|2|0|331; (*GB) gi|255590973|ref|XP_002535407.1| (e_value=5e-63) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G02700.1 (e_value=4e-19) | Symbols: | F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456;; (*ITAG) Solyc03g121290.2.1 (e_value=5e-148) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00040677g0001.1 protein AED:0.33 eAED:0.33 QI:681|0.6|0.5|0.83|0.6|0.5|6|0|313; (*GB) gi|225425476|ref|XP_002272745.1| (e_value=3e-169) PREDICTED: F-box/kelch-repeat protein At1g67480 [Vitis vinifera];; (*SWP) sp|Q9CAG8|FBK28_ARATH (e_value=1e-130) F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1;; (*TAIR) AT1G67480.2 (e_value=1e-131) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:25277294-25278529 FORWARD LENGTH=376;; (*ITAG) Solyc02g021600.1.1 (e_value=2e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13959590-13960798 transcript_region:SL2.40ch02:13959590..13960798+ functional_description:"Kelch-like protein 14 (AHRD V1 *-*- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00002322g0004.1 protein AED:0.27 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|265; (*GB) gi|356538966|ref|XP_003537971.1| (e_value=6e-130) PREDICTED: ras-related protein Rab11C-like [Glycine max];; (*SWP) sp|Q40193|RB11C_LOTJA (e_value=2e-129) Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=1e-125) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc06g005810.2.1 (e_value=4e-134) genomic_reference:SL2.40ch06 gene_region:839934-842843 transcript_region:SL2.40ch06:839934..842843- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00002322g0003.1 protein AED:0.20 eAED:0.45 QI:0|0|0|1|0|0|2|0|71; (*ITAG) Solyc00g316530.1.1 (e_value=4e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:21609206-21609442 transcript_region:SL2.40ch00:21609206..21609442+ go_terms:GO:0005524 functional_description:"Unknown Protein (AHRD V1)"; GO:0005524 NbS00045071g0004.1 protein AED:0.04 eAED:0.09 QI:39|0.66|0.5|1|0.33|0.75|4|338|116; (*GB) gi|186478174|ref|NP_172073.2| (e_value=4e-48) signal peptide peptidase-like 5 [Arabidopsis thaliana];; (*SWP) sp|Q3TD49|SPP2B_MOUSE (e_value=2e-19) Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2;; (*TAIR) AT1G05820.1 (e_value=9e-51) | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDASE-LIKE 5 | chr1:1749776-1753767 FORWARD LENGTH=536;; (*ITAG) Solyc09g098200.2.1 (e_value=5e-67) genomic_reference:SL2.40ch09 gene_region:67334742-67339932 transcript_region:SL2.40ch09:67334742..67339932+ go_terms:GO:0005515,GO:0042500 functional_description:"Signal peptide peptidase (AHRD V1 ***- Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0005515,GO:0042500 NbS00054974g0004.1 protein AED:0.08 eAED:0.08 QI:223|1|0.5|1|1|1|2|0|104; (*GB) gi|365222936|gb|AEW69820.1| (e_value=2e-56) Hop-interacting protein THI135 [Solanum lycopersicum];; (*TAIR) AT4G35780.1 (e_value=1e-40) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc02g083290.2.1 (e_value=3e-59) genomic_reference:SL2.40ch02 gene_region:41311201-41321957 transcript_region:SL2.40ch02:41311201..41321957- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00054974g0003.1 protein AED:0.23 eAED:0.63 QI:0|0|0|0.66|0.5|0.33|3|0|72; (*GB) gi|365222936|gb|AEW69820.1| (e_value=5e-27) Hop-interacting protein THI135 [Solanum lycopersicum];; (*TAIR) AT4G35780.1 (e_value=3e-27) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc02g083290.2.1 (e_value=8e-30) genomic_reference:SL2.40ch02 gene_region:41311201-41321957 transcript_region:SL2.40ch02:41311201..41321957- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00006402g0005.1 protein AED:0.16 eAED:0.16 QI:107|1|1|1|0.93|0.93|16|250|643; (*GB) gi|296090191|emb|CBI40010.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZPI1|SYK_ARATH (e_value=0.0) Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1;; (*TAIR) AT3G11710.1 (e_value=0.0) | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702359-3705613 REVERSE LENGTH=626;; (*ITAG) Solyc06g073330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41570956-41578584 transcript_region:SL2.40ch06:41570956..41578584- go_terms:GO:0004824 functional_description:"Lysyl-tRNA synthetase (AHRD V1 **** B9SY11_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0004824 NbS00016201g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|328; (*GB) gi|255540451|ref|XP_002511290.1| (e_value=4e-177) copine, putative [Ricinus communis];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=7e-162) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=6e-163) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc03g111870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00016201g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|224119510|ref|XP_002318092.1| (e_value=1e-133) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SS90|RGLG1_ARATH (e_value=3e-123) E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1;; (*TAIR) AT3G01650.1 (e_value=2e-124) | Symbols: RGLG1 | RING domain ligase1 | chr3:242734-245062 FORWARD LENGTH=489;; (*ITAG) Solyc03g111870.2.1 (e_value=3e-138) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00016201g0011.1 protein AED:0.18 eAED:0.18 QI:179|0.87|0.88|1|0.75|0.88|9|449|513; (*GB) gi|225464400|ref|XP_002268110.1| (e_value=0.0) PREDICTED: exocyst complex component 7 [Vitis vinifera];; (*SWP) sp|Q558Z9|EXOC7_DICDI (e_value=4e-18) Exocyst complex component 7 OS=Dictyostelium discoideum GN=exoc7 PE=3 SV=1;; (*TAIR) AT5G03540.1 (e_value=0.0) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc04g009740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3062113-3072311 transcript_region:SL2.40ch04:3062113..3072311- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_YARLI); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00045051g0007.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|353731076|ref|NP_001238802.1| (e_value=4e-113) ZIP5 [Solanum lycopersicum];; (*SWP) sp|O64738|ZIP6_ARATH (e_value=2e-94) Zinc transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ZIP6 PE=2 SV=1;; (*TAIR) AT2G30080.1 (e_value=2e-95) | Symbols: ZIP6, ATZIP6 | ZIP metal ion transporter family | chr2:12838730-12840112 REVERSE LENGTH=341;; (*ITAG) Solyc05g053370.2.1 (e_value=8e-116) genomic_reference:SL2.40ch05 gene_region:62628117-62630097 transcript_region:SL2.40ch05:62628117..62630097+ go_terms:GO:0046873 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0046873 NbS00045051g0009.1 protein AED:0.27 eAED:0.28 QI:723|0.5|0.38|1|0.33|0.23|13|63|1395; (*GB) gi|224054576|ref|XP_002298329.1| (e_value=5e-77) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g031650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23381791-23386705 transcript_region:SL2.40ch09:23381791..23386705- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q1RQ04_CIOIN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00008700g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.84|0.84|0.96|0.56|0.65|26|137|1070; (*GB) gi|359483546|ref|XP_002264679.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1-like [Vitis vinifera];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29750.2 (e_value=0.0) | Symbols: RKF1 | receptor-like kinase in flowers 1 | chr1:10414071-10420469 REVERSE LENGTH=1021;; (*ITAG) Solyc02g071880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35821174-35834341 transcript_region:SL2.40ch02:35821174..35834341- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00008700g0011.1 protein AED:0.26 eAED:0.26 QI:278|0.63|0.65|1|0.45|0.47|23|360|932; (*GB) gi|224078996|ref|XP_002305711.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29750.2 (e_value=0.0) | Symbols: RKF1 | receptor-like kinase in flowers 1 | chr1:10414071-10420469 REVERSE LENGTH=1021;; (*ITAG) Solyc02g071870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35797454-35809682 transcript_region:SL2.40ch02:35797454..35809682- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00017976g0006.1 protein AED:0.09 eAED:0.10 QI:120|0.94|0.94|1|1|1|18|449|738; (*GB) gi|171854673|dbj|BAG16526.1| (e_value=0.0) putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense];; (*SWP) sp|O49809|MFPA_BRANA (e_value=0.0) Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2;; (*TAIR) AT3G06860.1 (e_value=0.0) | Symbols: MFP2, ATMFP2 | multifunctional protein 2 | chr3:2161926-2166009 FORWARD LENGTH=725;; (*ITAG) Solyc12g099440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64931946-64939624 transcript_region:SL2.40ch12:64931946..64939624+ go_terms:GO:0050662,GO:0008152,GO:0006631,GO:0016491 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0050662,GO:0008152,GO:0006631,GO:0016491 NbS00017976g0009.1 protein AED:0.48 eAED:0.48 QI:0|0.66|0.25|1|0|0.25|4|0|127; (*GB) gi|297745506|emb|CBI40586.3| (e_value=5e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G07950.1 (e_value=9e-21) | Symbols: | DNA-directed RNA polymerase, subunit M, archaeal | chr4:4798910-4799510 FORWARD LENGTH=106;; (*ITAG) Solyc05g055890.2.1 (e_value=6e-44) genomic_reference:SL2.40ch05 gene_region:64494418-64496316 transcript_region:SL2.40ch05:64494418..64496316+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase subunit (AHRD V1 **** Q9ZQC0_ARATH); contains Interpro domain(s) IPR001222 Zinc finger, TFIIS-type "; GO:0003899 NbS00017976g0010.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|267; (*GB) gi|225431743|ref|XP_002270026.1| (e_value=3e-34) PREDICTED: uncharacterized protein LOC100244834 [Vitis vinifera];; (*TAIR) AT3G06868.1 (e_value=5e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2167872-2168981 FORWARD LENGTH=369;; (*ITAG) Solyc12g099450.1.1 (e_value=6e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64942526-64944096 transcript_region:SL2.40ch12:64942526..64944096+ functional_description:"Genomic DNA chromosome 5 TAC clone K20J1 (AHRD V1 *-*- Q9FH24_ARATH)"; NbS00011570g0012.1 protein AED:0.12 eAED:0.12 QI:1338|1|1|1|0.8|0.66|6|704|339; (*GB) gi|4097585|gb|AAD09518.1| (e_value=0.0) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|P54120|AIG1_ARATH (e_value=2e-62) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=1e-126) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc11g028010.1.1 (e_value=9e-166) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00011570g0014.1 protein AED:0.04 eAED:0.14 QI:0|1|0.75|1|0.66|0.5|4|0|370; (*GB) gi|71726944|gb|AAZ39643.1| (e_value=3e-171) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|O48786|C734A_ARATH (e_value=7e-46) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT5G24910.1 (e_value=1e-66) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc06g082730.2.1 (e_value=6e-96) genomic_reference:SL2.40ch06 gene_region:44735567-44738356 transcript_region:SL2.40ch06:44735567..44738356+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00011570g0016.1 protein AED:0.03 eAED:0.11 QI:0|0.75|0.4|1|0.75|0.6|5|0|131; (*GB) gi|1568513|emb|CAA57445.1| (e_value=2e-63) fbp11 [Petunia x hybrida];; (*SWP) sp|Q40872|AG_PANGI (e_value=9e-27) Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1;; (*TAIR) AT2G42830.1 (e_value=9e-27) | Symbols: SHP2, AGL5 | K-box region and MADS-box transcription factor family protein | chr2:17820602-17823806 FORWARD LENGTH=246;; (*ITAG) Solyc11g028020.1.1 (e_value=3e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16517636-16525760 transcript_region:SL2.40ch11:16517636..16525760- go_terms:GO:0005634 functional_description:"Agamous MADS-box transcription factor (AHRD V1 ***- B2CDE2_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00008421g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|0.5|2|0|360; (*GB) gi|259563723|gb|ACW83060.1| (e_value=0.0) glycosyltransferase family GT8 protein [Populus deltoides];; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=3e-170) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=2e-171) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc04g079860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61775917-61776948 transcript_region:SL2.40ch04:61775917..61776948- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00020312g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|344; (*GB) gi|147789011|emb|CAN62585.1| (e_value=2e-175) hypothetical protein VITISV_009733 [Vitis vinifera];; (*TAIR) AT4G08940.1 (e_value=2e-159) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:5730986-5732173 REVERSE LENGTH=395;; (*ITAG) Solyc04g074280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57868106-57869335 transcript_region:SL2.40ch04:57868106..57869335- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00020312g0006.1 protein AED:0.12 eAED:0.13 QI:336|1|0.5|1|1|0.75|4|0|660; (*GB) gi|225459284|ref|XP_002285786.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252301 [Vitis vinifera];; (*SWP) sp|Q54Q39|PP1R7_DICDI (e_value=9e-11) Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1;; (*TAIR) AT1G78230.1 (e_value=2e-146) | Symbols: | Outer arm dynein light chain 1 protein | chr1:29430226-29432516 FORWARD LENGTH=681;; (*ITAG) Solyc04g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57863338-57865996 transcript_region:SL2.40ch04:57863338..57865996+ go_terms:GO:0005515 functional_description:"Phosphatase 1 regulatory subunit 7 (AHRD V1 *--- C1C4C3_RANCA); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00025215g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|309; (*ITAG) Solyc07g063990.1.1 (e_value=7e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63528557-63531698 transcript_region:SL2.40ch07:63528557..63531698- functional_description:"Unknown Protein (AHRD V1)"; NbS00025215g0008.1 protein AED:0.23 eAED:0.24 QI:83|1|0.5|1|1|1|2|0|133; (*GB) gi|224115182|ref|XP_002316965.1| (e_value=1e-61) histone H2 [Populus trichocarpa];; (*SWP) sp|Q9C681|H2A1_ARATH (e_value=1e-59) Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1;; (*TAIR) AT1G51060.1 (e_value=7e-61) | Symbols: HTA10 | histone H2A 10 | chr1:18926948-18927443 FORWARD LENGTH=132;; (*ITAG) Solyc10g006560.2.1 (e_value=2e-63) genomic_reference:SL2.40ch10 gene_region:1118420-1120843 transcript_region:SL2.40ch10:1118420..1120843- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- A9PCS9_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00025215g0009.1 protein AED:0.84 eAED:1.00 QI:0|0|0|0.2|0.75|0.8|5|0|97 NbS00055894g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.95|0.91|1|0.68|0.73|23|138|953; (*GB) gi|113911589|gb|ABI48276.1| (e_value=0.0) phototropin-2 [Solanum lycopersicum];; (*SWP) sp|P93025|PHOT2_ARATH (e_value=0.0) Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2;; (*TAIR) AT5G58140.1 (e_value=0.0) | Symbols: PHOT2, NPL1 | phototropin 2 | chr5:23524771-23529993 FORWARD LENGTH=915;; (*ITAG) Solyc01g097770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80240073-80252816 transcript_region:SL2.40ch01:80240073..80252816- go_terms:GO:0010181,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D2V878_NAEGR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0010181,GO:0004674 NbS00013273g0011.1 protein AED:0.29 eAED:0.31 QI:0|0.4|0.5|1|0.6|0.33|6|0|329; (*GB) gi|126013404|gb|ABN69037.1| (e_value=3e-128) protein kinase [Solanum tuberosum];; (*SWP) sp|P43293|NAK_ARATH (e_value=2e-102) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2;; (*TAIR) AT5G02290.2 (e_value=1e-103) | Symbols: NAK | Protein kinase superfamily protein | chr5:470387-472397 REVERSE LENGTH=389;; (*ITAG) Solyc10g084770.1.1 (e_value=6e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63516371-63519177 transcript_region:SL2.40ch10:63516371..63519177+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 ***- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013273g0004.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|113; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00013273g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.25|1|0.33|0.75|4|0|259; (*GB) gi|350538315|ref|NP_001234081.1| (e_value=2e-136) expansin A4 precursor [Solanum lycopersicum];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=2e-127) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=2e-128) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc09g010860.2.1 (e_value=4e-139) genomic_reference:SL2.40ch09 gene_region:4181506-4184618 transcript_region:SL2.40ch09:4181506..4184618- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00012269g0005.1 protein AED:0.02 eAED:0.02 QI:75|1|1|1|1|1|2|181|151; (*GB) gi|351725389|ref|NP_001235555.1| (e_value=1e-63) uncharacterized protein LOC100305705 [Glycine max];; (*SWP) sp|Q2HU68|H2A1_MEDTR (e_value=8e-60) Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1;; (*TAIR) AT5G02560.1 (e_value=9e-60) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc11g073250.1.1 (e_value=2e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53355429-53355963 transcript_region:SL2.40ch11:53355429..53355963- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- C6TMV8_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00012269g0003.1 protein AED:0.04 eAED:0.04 QI:193|1|1|1|0.87|0.77|9|186|473; (*GB) gi|356525780|ref|XP_003531501.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max];; (*SWP) sp|P81795|IF2G_RAT (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc05g054310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63392299-63395734 transcript_region:SL2.40ch05:63392299..63395734+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00006551g0006.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0|0.66|0.5|0.66|3|0|525; (*GB) gi|359475314|ref|XP_003631650.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g63850-like [Vitis vinifera];; (*SWP) sp|Q8RX01|Y3567_ARATH (e_value=2e-18) BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1;; (*TAIR) AT3G05675.1 (e_value=2e-19) | Symbols: | BTB/POZ domain-containing protein | chr3:1658425-1659859 REVERSE LENGTH=441;; (*ITAG) Solyc01g109600.2.1 (e_value=7e-94) genomic_reference:SL2.40ch01 gene_region:88266543-88269823 transcript_region:SL2.40ch01:88266543..88269823+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006551g0007.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|3|0|285; (*GB) gi|297741455|emb|CBI32586.3| (e_value=1e-130) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=1e-55) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G19400.2 (e_value=9e-100) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:6712222-6713676 REVERSE LENGTH=303;; (*ITAG) Solyc01g109610.2.1 (e_value=2e-168) genomic_reference:SL2.40ch01 gene_region:88270498-88272762 transcript_region:SL2.40ch01:88270498..88272762- functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00033588g0006.1 protein AED:0.50 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|146 NbS00000528g0007.1 protein AED:0.05 eAED:0.06 QI:0|0.33|0.5|1|0.66|0.25|4|0|160; (*GB) gi|255541594|ref|XP_002511861.1| (e_value=4e-35) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q0JHU5|ERG1_ORYSJ (e_value=4e-15) Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1;; (*TAIR) AT4G00467.1 (e_value=2e-38) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:214846-216076 REVERSE LENGTH=202;; (*ITAG) Solyc10g017480.1.1 (e_value=5e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5353899-5357542 transcript_region:SL2.40ch10:5353899..5357542- functional_description:"Elicitor-responsive protein 1 (AHRD V1 **-- B6T411_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00000528g0004.1 protein AED:0.28 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|138; (*GB) gi|439491|dbj|BAA05078.1| (e_value=1e-15) zinc-finger DNA binding protein [Petunia x hybrida];; (*ITAG) Solyc12g088390.1.1 (e_value=5e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62238837-62239439 transcript_region:SL2.40ch12:62238837..62239439+ go_terms:GO:0005622 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00001205g0013.1 protein AED:0.44 eAED:0.68 QI:0|0|0|1|0|0.5|2|0|143; (*GB) gi|297740923|emb|CBI31105.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g036600.1.1 (e_value=1e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31773553-31775183 transcript_region:SL2.40ch12:31773553..31775183- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 *-*- NUOD_RICCK); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00001205g0015.1 protein AED:0.41 eAED:0.60 QI:0|0|0|1|0|0|3|0|220; (*GB) gi|377807000|ref|YP_005090430.1| (e_value=4e-39) nad7 gene product (mitochondrion) [Boea hygrometrica];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=8e-39) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=5e-39) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-39) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00001205g0018.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0|3|0|156; (*ITAG) Solyc12g036640.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:31779764-31782130 transcript_region:SL2.40ch12:31779764..31782130- functional_description:"Unknown Protein (AHRD V1)"; NbS00001205g0017.1 protein AED:0.63 eAED:0.69 QI:0|0|0|0.5|0|0|2|0|121; (*ITAG) Solyc00g014860.1.1 (e_value=8e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11074683-11074992 transcript_region:SL2.40ch00:11074683..11074992- functional_description:"Unknown Protein (AHRD V1)"; NbS00001205g0016.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|297740917|emb|CBI31099.3| (e_value=3e-47) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=2e-43) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-40) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=7e-44) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00001205g0019.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|57014020|ref|YP_173491.1| (e_value=1e-49) hypothetical protein NitaMp154 [Nicotiana tabacum];; (*ITAG) Solyc00g014850.1.1 (e_value=2e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:11073759-11074070 transcript_region:SL2.40ch00:11073759..11074070- functional_description:"ORF86 (AHRD V1 ***- B6VJY4_VITVI)"; NbS00001205g0014.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|88; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=4e-21) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-22) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-20) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=8e-24) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00034747g0007.1 protein AED:0.48 eAED:0.79 QI:0|0|0.33|1|0|0.33|3|0|85 NbS00034747g0006.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|3|0|365; (*GB) gi|224055319|ref|XP_002298478.1| (e_value=2e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7TPD0|INT3_MOUSE (e_value=2e-74) Integrator complex subunit 3 OS=Mus musculus GN=Ints3 PE=1 SV=2;; (*TAIR) AT4G14590.1 (e_value=4e-112) | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962 FORWARD LENGTH=508;; (*ITAG) Solyc06g071630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40506198-40507703 transcript_region:SL2.40ch06:40506198..40507703- functional_description:"Integrator complex subunit 3 homolog (AHRD V1 ***- INT3_DROMO); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00034747g0005.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|15233503|ref|NP_193195.1| (e_value=1e-27) integrator complex subunit 3 [Arabidopsis thaliana];; (*TAIR) AT4G14590.1 (e_value=3e-30) | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962 FORWARD LENGTH=508;; (*ITAG) Solyc06g071630.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40506198-40507703 transcript_region:SL2.40ch06:40506198..40507703- functional_description:"Integrator complex subunit 3 homolog (AHRD V1 ***- INT3_DROMO); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00017940g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|255588318|ref|XP_002534567.1| (e_value=8e-39) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G14060.1 (e_value=1e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4657174-4657551 REVERSE LENGTH=125;; (*ITAG) Solyc06g062930.1.1 (e_value=3e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36112577-36112957 transcript_region:SL2.40ch06:36112577..36112957- functional_description:"Unknown Protein (AHRD V1)"; NbS00017940g0003.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|356519826|ref|XP_003528570.1| (e_value=3e-55) PREDICTED: uncharacterized protein LOC100803697 [Glycine max];; (*TAIR) AT1G72510.2 (e_value=4e-47) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc06g062960.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36127141-36127632 transcript_region:SL2.40ch06:36127141..36127632- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00006833g0001.1 protein AED:0.36 eAED:0.37 QI:0|0.75|0.8|1|0.5|0.8|5|482|208; (*GB) gi|225458798|ref|XP_002285196.1| (e_value=3e-18) PREDICTED: acyl-CoA-binding domain-containing protein 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STX1|ACBP3_ARATH (e_value=3e-19) Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1;; (*TAIR) AT4G24230.6 (e_value=2e-20) | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12567122-12568754 REVERSE LENGTH=366;; (*ITAG) Solyc04g078090.2.1 (e_value=2e-32) genomic_reference:SL2.40ch04 gene_region:60529683-60534340 transcript_region:SL2.40ch04:60529683..60534340+ go_terms:GO:0000062,GO:0005488 functional_description:"Acyl-CoA-binding domain-containing protein 6 (AHRD V1 *-*- B6SHQ7_MAIZE); contains Interpro domain(s) IPR000582 Acyl-CoA-binding protein, ACBP "; GO:0000062,GO:0005488 NbS00006833g0009.1 protein AED:0.39 eAED:0.46 QI:0|0|0|0.66|0|0.66|3|0|128; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-18) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00006833g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|188 NbS00006833g0010.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|3|0|165 NbS00030314g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.69|1|1|0.84|13|0|348; (*GB) gi|334186471|ref|NP_001154227.2| (e_value=9e-157) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G12840.2 (e_value=2e-159) | Symbols: | Protein of unknown function (DUF707) | chr4:7533621-7536263 REVERSE LENGTH=395;; (*ITAG) Solyc09g047910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:30543887-30546487 transcript_region:SL2.40ch09:30543887..30546487- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00030314g0010.1 protein AED:0.00 eAED:0.00 QI:118|1|1|1|1|1|2|768|197; (*GB) gi|225470397|ref|XP_002273015.1| (e_value=2e-82) PREDICTED: uncharacterized protein LOC100246515 [Vitis vinifera];; (*TAIR) AT3G07510.2 (e_value=1e-77) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2393895-2394464 REVERSE LENGTH=189;; (*ITAG) Solyc09g047930.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:30609081-30609602 transcript_region:SL2.40ch09:30609081..30609602+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030314g0012.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|86; (*GB) gi|357479523|ref|XP_003610047.1| (e_value=1e-22) hypothetical protein MTR_4g127350 [Medicago truncatula];; (*TAIR) AT2G19270.1 (e_value=7e-19) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). | chr2:8360349-8361907 REVERSE LENGTH=359;; (*ITAG) Solyc09g055850.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:41500331-41500987 transcript_region:SL2.40ch09:41500331..41500987- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018800 Mitotic checkpoint protein PRCC, C-terminal "; NbS00030314g0013.1 protein AED:0.11 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|464; (*GB) gi|357479523|ref|XP_003610047.1| (e_value=2e-16) hypothetical protein MTR_4g127350 [Medicago truncatula];; (*ITAG) Solyc09g055870.2.1 (e_value=7e-64) genomic_reference:SL2.40ch09 gene_region:41509781-41511476 transcript_region:SL2.40ch09:41509781..41511476- functional_description:"Unknown Protein (AHRD V1)"; NbS00012103g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|0.75|4|287|699; (*GB) gi|297738216|emb|CBI27417.3| (e_value=5e-175) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8MQR0|WIT2_ARATH (e_value=1e-121) WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1;; (*TAIR) AT1G68910.1 (e_value=1e-122) | Symbols: WIT2 | WPP domain-interacting protein 2 | chr1:25908234-25910485 REVERSE LENGTH=627;; (*ITAG) Solyc05g010590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4826860-4832345 transcript_region:SL2.40ch05:4826860..4832345- go_terms:GO:0042802 functional_description:"WPP domain-interacting tail-anchored protein 2 (AHRD V1 ***- WIT2_ARATH)"; GO:0042802 NbS00001353g0003.1 protein AED:0.29 eAED:0.30 QI:0|0.6|0.5|1|1|1|6|928|206; (*GB) gi|156763846|emb|CAO99125.1| (e_value=1e-82) putative esterase [Nicotiana tabacum];; (*TAIR) AT5G13800.1 (e_value=4e-76) | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-4454141 REVERSE LENGTH=484;; (*ITAG) Solyc01g088090.2.1 (e_value=2e-84) genomic_reference:SL2.40ch01 gene_region:74688575-74691916 transcript_region:SL2.40ch01:74688575..74691916- go_terms:GO:0080124 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M5W5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080124 NbS00007230g0005.1 protein AED:0.33 eAED:0.36 QI:0|0|0.5|1|1|1|4|0|186; (*ITAG) Solyc02g005360.1.1 (e_value=3e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00007230g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|320; (*ITAG) Solyc05g011960.2.1 (e_value=3e-24) genomic_reference:SL2.40ch05 gene_region:5175085-5179678 transcript_region:SL2.40ch05:5175085..5179678+ go_terms:GO:0031072 functional_description:"Heat shock protein binding protein (AHRD V1 *--- D7KWX9_ARALY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00007230g0009.1 protein AED:0.44 eAED:0.45 QI:0|0|0|1|0|0|2|0|64 NbS00007230g0006.1 protein AED:0.45 eAED:0.94 QI:0|0|0|1|0|0|2|0|64 NbS00046544g0002.1 protein AED:0.33 eAED:0.58 QI:0|0|0.33|0.66|1|1|3|152|61 NbS00001719g0110.1 protein AED:0.02 eAED:0.02 QI:22|0.33|0.5|0.75|1|1|4|319|175 NbS00001719g0109.1 protein AED:0.24 eAED:0.24 QI:453|0.5|0.33|1|1|1|3|0|298 NbS00005642g0001.1 protein AED:0.05 eAED:0.06 QI:396|1|0.5|1|0|0|2|0|776; (*GB) gi|147772268|emb|CAN67351.1| (e_value=0.0) hypothetical protein VITISV_018091 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc05g040050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00032980g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|235; (*GB) gi|359472942|ref|XP_002279484.2| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100244117 [Vitis vinifera];; (*TAIR) AT1G25370.1 (e_value=8e-20) | Symbols: | Protein of unknown function (DUF1639) | chr1:8898046-8898934 REVERSE LENGTH=263;; (*ITAG) Solyc04g007350.2.1 (e_value=2e-59) genomic_reference:SL2.40ch04 gene_region:1056015-1057246 transcript_region:SL2.40ch04:1056015..1057246- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00010380g0001.1 protein AED:0.17 eAED:0.17 QI:356|0.83|0.92|1|0.75|0.76|13|31|639; (*GB) gi|359479011|ref|XP_002284532.2| (e_value=0.0) PREDICTED: probable NOT transcription complex subunit VIP2-like [Vitis vinifera];; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=0.0) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*TAIR) AT1G07705.2 (e_value=0.0) | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2382090-2385856 FORWARD LENGTH=614;; (*ITAG) Solyc06g075590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43370736-43379277 transcript_region:SL2.40ch06:43370736..43379277+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00010380g0003.1 protein AED:0.05 eAED:0.09 QI:0|0|0|1|1|1|2|0|703; (*GB) gi|359479007|ref|XP_002281519.2| (e_value=1e-153) PREDICTED: uncharacterized protein LOC100248374 [Vitis vinifera];; (*TAIR) AT2G39380.1 (e_value=9e-116) | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70 family protein H2 | chr2:16447096-16449009 REVERSE LENGTH=637;; (*ITAG) Solyc06g075610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43387130-43389001 transcript_region:SL2.40ch06:43387130..43389001- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_DROME); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00010380g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|750|565; (*GB) gi|356557461|ref|XP_003547034.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=0.0) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc06g075600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43379496-43381493 transcript_region:SL2.40ch06:43379496..43381493- go_terms:GO:0042803 functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00049600g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|609; (*GB) gi|30016902|gb|AAP04001.1| (e_value=0.0) EIL5 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=0.0) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=0.0) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc01g096810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79563681-79566235 transcript_region:SL2.40ch01:79563681..79566235- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00049600g0007.1 protein AED:0.49 eAED:0.53 QI:0|0|0|0.66|1|1|3|0|65; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00049600g0008.1 protein AED:0.54 eAED:0.54 QI:256|0|0.5|0.5|0|0.5|2|0|87 NbS00049600g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|5814023|gb|AAD52092.1|AF087813_1 (e_value=2e-63) calcium/calmodulin dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|A0AAR7|CCAMK_LOTJA (e_value=7e-43) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus GN=CCAMK PE=1 SV=1;; (*ITAG) Solyc01g096820.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:79577959-79582114 transcript_region:SL2.40ch01:79577959..79582114+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 ***- Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00013827g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|790; (*GB) gi|359486440|ref|XP_002275845.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g59700-like [Vitis vinifera];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=0.0) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=0.0) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc05g054860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63814538-63816973 transcript_region:SL2.40ch05:63814538..63816973+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00013827g0014.1 protein AED:0.06 eAED:0.06 QI:40|1|1|1|0.6|0.66|6|356|171; (*GB) gi|255571699|ref|XP_002526793.1| (e_value=6e-45) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g054840.2.1 (e_value=6e-81) genomic_reference:SL2.40ch05 gene_region:63793861-63796929 transcript_region:SL2.40ch05:63793861..63796929+ functional_description:"Chromosome 21 open reading frame 59 (Predicted) (AHRD V1 **-- A9CAY9_PAPAN)"; NbS00013827g0008.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|224109618|ref|XP_002315257.1| (e_value=4e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=4e-126) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G12360.1 (e_value=3e-127) | Symbols: ITN1 | Ankyrin repeat family protein | chr3:3934146-3936495 FORWARD LENGTH=590;; (*ITAG) Solyc05g054830.2.1 (e_value=3e-154) genomic_reference:SL2.40ch05 gene_region:63788805-63793279 transcript_region:SL2.40ch05:63788805..63793279+ go_terms:GO:0042803 functional_description:"Ankyrin-repeat protein (AHRD V1 **-- A2CIR5_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00013827g0012.1 protein AED:0.01 eAED:0.02 QI:0|0|0.5|1|0|0|2|0|455; (*GB) gi|255571701|ref|XP_002526794.1| (e_value=9e-55) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80624|MAKR4_ARATH (e_value=8e-37) Probable membrane-associated kinase regulator 4 OS=Arabidopsis thaliana GN=MAKR4 PE=2 SV=1;; (*TAIR) AT2G39370.1 (e_value=6e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:16444280-16445266 REVERSE LENGTH=328;; (*ITAG) Solyc05g054850.1.1 (e_value=1e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63801469-63802563 transcript_region:SL2.40ch05:63801469..63802563- functional_description:"Unknown Protein (AHRD V1)"; NbS00013827g0013.1 protein AED:0.27 eAED:0.29 QI:0|1|0.77|1|0.75|0.88|9|0|268; (*GB) gi|297734589|emb|CBI16640.3| (e_value=5e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6C9G2|BFR2_YARLI (e_value=4e-18) Protein BFR2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BFR2 PE=3 SV=1;; (*TAIR) AT5G61330.1 (e_value=1e-109) | Symbols: | rRNA processing protein-related | chr5:24657287-24660103 REVERSE LENGTH=436;; (*ITAG) Solyc01g090470.2.1 (e_value=2e-178) genomic_reference:SL2.40ch01 gene_region:75913574-75920741 transcript_region:SL2.40ch01:75913574..75920741+ go_terms:GO:0043522 functional_description:"Bfr2 (AHRD V1 **-- B6JYE3_SCHJY); contains Interpro domain(s) IPR012617 TRAUB "; GO:0043522 NbS00014456g0001.1 protein AED:0.40 eAED:0.42 QI:30|0|0.5|1|0|0.5|2|0|124; (*GB) gi|225438813|ref|XP_002283333.1| (e_value=5e-33) PREDICTED: protein RER1A [Vitis vinifera];; (*SWP) sp|O48670|RER1A_ARATH (e_value=6e-31) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=5e-32) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc02g093010.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:48544256-48547568 transcript_region:SL2.40ch02:48544256..48547568+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00014043g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|215; (*ITAG) Solyc01g088540.1.1 (e_value=1e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:75089764-75090417 transcript_region:SL2.40ch01:75089764..75090417+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00000168g0002.1 protein AED:0.27 eAED:0.27 QI:39|1|1|1|0.5|0.33|3|170|111; (*GB) gi|359492195|ref|XP_003634377.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100259103 isoform 2 [Vitis vinifera];; (*TAIR) AT1G30845.1 (e_value=1e-30) | Symbols: | unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr1:10979856-10980427 FORWARD LENGTH=118;; (*ITAG) Solyc04g081160.2.1 (e_value=1e-50) genomic_reference:SL2.40ch04 gene_region:62769488-62772286 transcript_region:SL2.40ch04:62769488..62772286+ functional_description:"Cell growth defect factor 2 (AHRD V1 ***- B6T7D5_MAIZE)"; NbS00021964g0007.1 protein AED:0.34 eAED:0.34 QI:212|1|1|1|0|0|7|139|187; (*GB) gi|371501276|dbj|BAL44265.1| (e_value=2e-117) ADP-ribosylation factor-like 8d [Nicotiana tabacum];; (*SWP) sp|Q6NZW8|AR8BA_DANRE (e_value=7e-77) ADP-ribosylation factor-like protein 8B-A OS=Danio rerio GN=arl8ba PE=2 SV=1;; (*TAIR) AT5G37680.1 (e_value=7e-116) | Symbols: ATARLA1A, ARLA1A | ADP-ribosylation factor-like A1A | chr5:14969797-14971098 REVERSE LENGTH=184;; (*ITAG) Solyc11g011040.1.1 (e_value=1e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4089589-4094356 transcript_region:SL2.40ch11:4089589..4094356- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor-like protein (AHRD V1 ***- Q8W4C8_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00021964g0004.1 protein AED:0.31 eAED:0.31 QI:272|1|0.85|1|1|1|7|0|209; (*GB) gi|389986097|gb|AFL46166.1| (e_value=4e-107) jasmonate ZIM domain protein b [Nicotiana attenuata];; (*ITAG) Solyc11g011030.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4085875-4088959 transcript_region:SL2.40ch11:4085875..4088959+ functional_description:"Pto-responsive gene 1 protein (AHRD V1 ***- Q9M723_SOLLC); contains Interpro domain(s) IPR010399 Tify "; NbS00021964g0002.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.25|1|1|4|0|86 NbS00035823g0001.1 protein AED:0.33 eAED:0.34 QI:109|1|0.75|1|0.66|0.5|4|0|167; (*GB) gi|147857570|emb|CAN83082.1| (e_value=3e-80) hypothetical protein VITISV_001330 [Vitis vinifera];; (*SWP) sp|O64527|Y1926_ARATH (e_value=6e-74) UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1;; (*TAIR) AT1G79260.1 (e_value=5e-75) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1794 (InterPro:IPR014878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29813282-29814066 FORWARD LENGTH=166;; (*ITAG) Solyc11g011620.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4682646-4688264 transcript_region:SL2.40ch11:4682646..4688264- functional_description:"Fatty acid-binding protein-like protein (AHRD V1 ***- D6FMZ4_MYCTU); contains Interpro domain(s) IPR014878 Region of unknown function DUF1794 "; NbS00035823g0004.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|20149052|gb|AAM12781.1| (e_value=1e-53) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=2e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc10g052530.1.1 (e_value=9e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48389880-48390317 transcript_region:SL2.40ch10:48389880..48390317- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00035823g0011.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0.25|0.2|5|0|418; (*GB) gi|20149052|gb|AAM12781.1| (e_value=3e-63) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=8e-39) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc10g052530.1.1 (e_value=7e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48389880-48390317 transcript_region:SL2.40ch10:48389880..48390317- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00055160g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.33|0.25|1|0.33|0|4|53|222; (*GB) gi|336093137|gb|AEI01103.1| (e_value=1e-151) glutathione transferase [Nicotiana benthamiana];; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=2e-112) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=4e-107) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc07g056490.2.1 (e_value=2e-129) genomic_reference:SL2.40ch07 gene_region:61624235-61625888 transcript_region:SL2.40ch07:61624235..61625888- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00055160g0005.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|170; (*GB) gi|19817|emb|CAA45741.1| (e_value=1e-57) C-7 [Nicotiana tabacum];; (*SWP) sp|Q9SHH7|GSTUP_ARATH (e_value=3e-52) Glutathione S-transferase U25 OS=Arabidopsis thaliana GN=GSTU25 PE=2 SV=1;; (*TAIR) AT1G17180.1 (e_value=2e-53) | Symbols: ATGSTU25, GSTU25 | glutathione S-transferase TAU 25 | chr1:5872208-5872958 FORWARD LENGTH=221;; (*ITAG) Solyc07g056490.2.1 (e_value=2e-60) genomic_reference:SL2.40ch07 gene_region:61624235-61625888 transcript_region:SL2.40ch07:61624235..61625888- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00018657g0008.1 protein AED:0.21 eAED:0.30 QI:0|0|0|1|0|0|3|0|292; (*GB) gi|359487360|ref|XP_003633577.1| (e_value=6e-63) PREDICTED: anthocyanin 5-aromatic acyltransferase-like [Vitis vinifera];; (*SWP) sp|Q8W1W9|5MAT1_SALSN (e_value=2e-34) Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase OS=Salvia splendens GN=5MAT1 PE=1 SV=1;; (*TAIR) AT1G03495.1 (e_value=2e-28) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:873436-874832 FORWARD LENGTH=465;; (*ITAG) Solyc10g008680.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00018782g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|805; (*GB) gi|147806293|emb|CAN76555.1| (e_value=0.0) hypothetical protein VITISV_011396 [Vitis vinifera];; (*SWP) sp|O23052|Y1515_ARATH (e_value=0.0) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=0.0) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003355g0003.1 protein AED:0.20 eAED:0.35 QI:0|1|0.66|1|0.6|0.83|6|0|306; (*GB) gi|225463323|ref|XP_002268264.1| (e_value=2e-90) PREDICTED: protein TIC 22-like, chloroplastic [Vitis vinifera];; (*SWP) sp|F4J469|TI22L_ARATH (e_value=2e-84) Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1;; (*TAIR) AT3G23710.1 (e_value=2e-85) | Symbols: | Tic22-like family protein | chr3:8534061-8536148 FORWARD LENGTH=313;; (*ITAG) Solyc09g092530.2.1 (e_value=4e-145) genomic_reference:SL2.40ch09 gene_region:66931956-66935856 transcript_region:SL2.40ch09:66931956..66935856- functional_description:"Tic22 (AHRD V1 ***- B6U4I8_MAIZE); contains Interpro domain(s) IPR007378 Tic22-like "; NbS00042305g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|350|328; (*GB) gi|156118322|gb|ABU49722.1| (e_value=9e-116) WRKY transcription factor 3 [Solanum tuberosum];; (*SWP) sp|Q9SV15|WRK11_ARATH (e_value=6e-87) Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2;; (*TAIR) AT4G31550.2 (e_value=9e-90) | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding protein 11 | chr4:15290065-15291458 REVERSE LENGTH=324;; (*ITAG) Solyc08g006320.2.1 (e_value=8e-120) genomic_reference:SL2.40ch08 gene_region:985013-986480 transcript_region:SL2.40ch08:985013..986480- go_terms:GO:0005516 functional_description:"WRKY transcription factor 3 (AHRD V1 ***- A7UGD0_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00017449g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|255547444|ref|XP_002514779.1| (e_value=1e-97) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G16250.1 (e_value=1e-77) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183;; (*ITAG) Solyc11g008690.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2874856-2875551 transcript_region:SL2.40ch11:2874856..2875551- functional_description:"TO23-3 (Fragment) (AHRD V1 *-*- Q3LVQ6_TAROF)"; NbS00017449g0012.1 protein AED:0.15 eAED:0.20 QI:197|0.92|0.8|1|0.78|0.73|15|389|550; (*GB) gi|255543755|ref|XP_002512940.1| (e_value=8e-168) Splicing factor U2AF-associated protein, putative [Ricinus communis];; (*SWP) sp|O43719|HTSF1_HUMAN (e_value=2e-31) HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1;; (*TAIR) AT5G16260.1 (e_value=3e-159) | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:5311363-5315496 FORWARD LENGTH=519;; (*ITAG) Solyc11g008700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2876416-2885934 transcript_region:SL2.40ch11:2876416..2885934- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor U2AF-associated protein (AHRD V1 *--- C0NKB4_AJECG); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00017449g0014.1 protein AED:0.03 eAED:0.03 QI:0|0.91|0.69|1|0.91|0.92|13|0|921; (*GB) gi|147836503|emb|CAN77600.1| (e_value=0.0) hypothetical protein VITISV_008038 [Vitis vinifera];; (*TAIR) AT1G65470.2 (e_value=3e-114) | Symbols: FAS1 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=807;; (*ITAG) Solyc11g008670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2849753-2857214 transcript_region:SL2.40ch11:2849753..2857214+ functional_description:"At1g65470/F5I14_33 (Fragment) (AHRD V1 *-*- Q9SXY0_ARATH)"; NbS00017449g0003.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|1|1|3|0|223; (*GB) gi|296080864|emb|CBI18794.3| (e_value=3e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q41319|STAD_SOLCO (e_value=5e-99) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2;; (*TAIR) AT2G43710.2 (e_value=1e-91) | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr2:18120107-18122495 FORWARD LENGTH=401;; (*ITAG) Solyc11g008680.1.1 (e_value=2e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2859715-2863853 transcript_region:SL2.40ch11:2859715..2863853+ go_terms:GO:0055114 functional_description:"Acyl- (AHRD V1 ***- Q4JIJ4_9ROSI); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0055114 NbS00006734g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|60 NbS00008024g0010.1 protein AED:0.15 eAED:0.15 QI:427|1|1|1|1|1|8|374|277; (*GB) gi|147834652|emb|CAN63106.1| (e_value=3e-163) hypothetical protein VITISV_000496 [Vitis vinifera];; (*SWP) sp|Q9SRS9|CHIP_ARATH (e_value=6e-140) E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1;; (*TAIR) AT3G07370.1 (e_value=4e-141) | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70-interacting protein | chr3:2358323-2360301 REVERSE LENGTH=278;; (*ITAG) Solyc06g083150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44977538-44982219 transcript_region:SL2.40ch06:44977538..44982219+ go_terms:GO:0034450 functional_description:"U-box domain-containing protein (AHRD V1 **-- C6HIA6_AJECH); contains Interpro domain(s) IPR003613 U box domain "; GO:0034450 NbS00008024g0003.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|296; (*GB) gi|255585630|ref|XP_002533502.1| (e_value=5e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07350.1 (e_value=1e-78) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g083160.1.1 (e_value=6e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44984247-44985128 transcript_region:SL2.40ch06:44984247..44985128- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B4FP41_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00008024g0015.1 protein AED:0.05 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|144; (*GB) gi|57013891|ref|YP_173365.1| (e_value=7e-70) hypothetical protein NitaMp017 [Nicotiana tabacum]; NbS00008024g0013.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|227; (*GB) gi|147784780|emb|CAN66525.1| (e_value=2e-42) hypothetical protein VITISV_043977 [Vitis vinifera];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=5e-33) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT3G07390.1 (e_value=1e-33) | Symbols: AIR12 | auxin-responsive family protein | chr3:2365452-2366273 FORWARD LENGTH=273;; (*ITAG) Solyc06g083140.2.1 (e_value=2e-75) genomic_reference:SL2.40ch06 gene_region:44972908-44974194 transcript_region:SL2.40ch06:44972908..44974194- go_terms:GO:0005201 functional_description:"Auxin-induced in root cultures protein 12 (AHRD V1 **-- AIR12_ARATH); contains Interpro domain(s) IPR007613 Protein of unknown function DUF568, DOMON-like "; GO:0005201 NbS00013752g0007.1 protein AED:0.20 eAED:0.20 QI:514|0.75|0.66|1|0.75|0.55|9|0|645; (*GB) gi|283443668|gb|ADB19851.1| (e_value=0.0) calcium-dependent protein kinase CDPK12 [Nicotiana tabacum];; (*SWP) sp|Q38870|CDPK2_ARATH (e_value=0.0) Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1;; (*TAIR) AT3G10660.1 (e_value=0.0) | Symbols: CPK2, ATCPK2 | calmodulin-domain protein kinase cdpk isoform 2 | chr3:3331599-3334268 REVERSE LENGTH=646;; (*ITAG) Solyc10g081740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62082038-62086600 transcript_region:SL2.40ch10:62082038..62086600- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium dependent protein kinase 1 (AHRD V1 ***- B9HVI0_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00013752g0004.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|0|269; (*GB) gi|327493151|gb|AEA86282.1| (e_value=3e-140) MIP family aquaporin [Solanum nigrum];; (*SWP) sp|Q9M1K3|SIP21_ARATH (e_value=6e-90) Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1;; (*TAIR) AT3G56950.2 (e_value=6e-91) | Symbols: SIP2;1 | small and basic intrinsic protein 2;1 | chr3:21078411-21079644 REVERSE LENGTH=260;; (*ITAG) Solyc01g056720.2.1 (e_value=3e-123) genomic_reference:SL2.40ch01 gene_region:49182437-49192481 transcript_region:SL2.40ch01:49182437..49192481- go_terms:GO:0015250 functional_description:"Aquaporin SIP12 (AHRD V1 ***- D8FSL5_GOSHI); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00015091g0014.1 protein AED:0.12 eAED:0.15 QI:0|0.6|0.45|1|0.6|0.63|11|0|1822; (*GB) gi|255550297|ref|XP_002516199.1| (e_value=0.0) fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis];; (*SWP) sp|P34756|FAB1_YEAST (e_value=1e-79) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc12g049590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46677541-46688352 transcript_region:SL2.40ch12:46677541..46688352+ go_terms:GO:0044267,GO:0008270,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-- D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0044267,GO:0008270,GO:0046488 NbS00015091g0013.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|593; (*GB) gi|6689892|gb|AAF23892.1|AF152172_1 (e_value=0.0) pectin methyl esterase [Solanum tuberosum];; (*SWP) sp|Q43143|PMEU1_SOLLC (e_value=0.0) Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1;; (*TAIR) AT3G14310.1 (e_value=0.0) | Symbols: ATPME3, PME3 | pectin methylesterase 3 | chr3:4772214-4775095 REVERSE LENGTH=592;; (*ITAG) Solyc03g123630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64478109-64481386 transcript_region:SL2.40ch03:64478109..64481386- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q564D7_SOLLC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00015091g0012.1 protein AED:0.19 eAED:0.19 QI:78|1|1|1|0.5|0.66|3|228|237; (*GB) gi|359482879|ref|XP_002271332.2| (e_value=3e-102) PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Vitis vinifera];; (*SWP) sp|Q54I81|EI2BA_DICDI (e_value=3e-19) Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1;; (*TAIR) AT1G53900.1 (e_value=9e-83) | Symbols: | Eukaryotic translation initiation factor 2B (eIF-2B) family protein | chr1:20127634-20130834 FORWARD LENGTH=580;; (*ITAG) Solyc12g049580.1.1 (e_value=5e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46664001-46668223 transcript_region:SL2.40ch12:46664001..46668223- go_terms:GO:0044237 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- MTNA_CLOTH); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0044237 NbS00006142g0005.1 protein AED:0.33 eAED:0.33 QI:226|0.57|0.37|1|0.14|0.37|8|0|478; (*GB) gi|356502555|ref|XP_003520084.1| (e_value=2e-148) PREDICTED: uncharacterized protein LOC100789831 [Glycine max];; (*TAIR) AT1G14180.2 (e_value=3e-56) | Symbols: | RING/U-box superfamily protein | chr1:4847976-4848970 FORWARD LENGTH=297;; (*ITAG) Solyc05g007820.2.1 (e_value=3e-121) genomic_reference:SL2.40ch05 gene_region:2261637-2262966 transcript_region:SL2.40ch05:2261637..2262966+ go_terms:GO:0008270 functional_description:"At1g19680-like protein (Fragment) (AHRD V1 *--- Q3YI70_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00006142g0203.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.33|1|1|1|3|0|158 NbS00006142g0216.1 protein AED:0.15 eAED:0.18 QI:25|0.71|0.62|1|0.57|0.62|8|56|540 NbS00006142g0211.1 protein AED:0.04 eAED:0.04 QI:202|1|1|1|1|1|2|483|193 NbS00006142g0214.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.83|1|0.6|0.83|6|546|173 NbS00019525g0018.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0.5|2|0|158; (*GB) gi|57014013|ref|YP_173484.1| (e_value=1e-78) hypothetical protein NitaMp147 [Nicotiana tabacum];; (*SWP) sp|P38450|YMF01_MARPO (e_value=5e-17) Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1;; (*ITAG) Solyc00g022100.1.1 (e_value=2e-80) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00019525g0019.1 protein AED:0.15 eAED:0.19 QI:0|0|0.14|1|0.16|0.28|7|0|554; (*GB) gi|57014017|ref|YP_173488.1| (e_value=2e-154) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-154) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-150) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-157) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00019525g0017.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|0|0|5|0|238; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=2e-67) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-46) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=9e-48) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=6e-69) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00019525g0021.1 protein AED:0.42 eAED:0.83 QI:0|0|0|1|0|0|2|0|95 NbS00007351g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|1|2|784|245; (*GB) gi|224094703|ref|XP_002310202.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q40287|UFOG5_MANES (e_value=2e-49) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*TAIR) AT2G18570.1 (e_value=6e-45) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:8063429-8064841 FORWARD LENGTH=470;; (*ITAG) Solyc02g063000.2.1 (e_value=5e-93) genomic_reference:SL2.40ch02 gene_region:29596989-29598828 transcript_region:SL2.40ch02:29596989..29598828- go_terms:GO:0047209 functional_description:"Glucosyltransferase (AHRD V1 **** A7M6J8_9ERIC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00007351g0010.1 protein AED:0.28 eAED:0.28 QI:113|0.93|0.94|1|0.81|0.82|17|809|605; (*GB) gi|350535316|ref|NP_001233932.1| (e_value=0.0) Xaa-Pro aminopeptidase 2 [Solanum lycopersicum];; (*SWP) sp|Q7RYL6|AMPP1_NEUCR (e_value=7e-174) Probable Xaa-Pro aminopeptidase P OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ampp PE=3 SV=1;; (*TAIR) AT4G36760.1 (e_value=0.0) | Symbols: ATAPP1, APP1 | aminopeptidase P1 | chr4:17326688-17329979 FORWARD LENGTH=645;; (*ITAG) Solyc02g062970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29536003-29545884 transcript_region:SL2.40ch02:29536003..29545884+ go_terms:GO:0070006 functional_description:"Xaa-Pro aminopeptidase 2 (AHRD V1 ***- Q93X45_SOLLC); contains Interpro domain(s) IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site IPR000994 Peptidase M24, structural domain "; GO:0070006 NbS00012042g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|806; (*GB) gi|224099309|ref|XP_002334494.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=0.0) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1104611-1107028 transcript_region:SL2.40ch01:1104611..1107028+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00014382g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|12331298|emb|CAC24711.1| (e_value=2e-45) cytochrome P450 [Solanum tuberosum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=8e-47) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=8e-31) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=1e-47) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014382g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|1|1|4|0|481; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=0.0) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=1e-113) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc01g008650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2712022-2714463 transcript_region:SL2.40ch01:2712022..2714463- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00034535g0006.1 protein AED:0.10 eAED:0.10 QI:854|1|1|1|0.6|0.5|6|399|277; (*GB) gi|356524876|ref|XP_003531054.1| (e_value=1e-152) PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Glycine max];; (*SWP) sp|Q54QA6|TRM11_DICDI (e_value=3e-47) tRNA (guanine(10)-N2)-methyltransferase homolog OS=Dictyostelium discoideum GN=trmt11 PE=3 SV=1;; (*TAIR) AT3G26410.1 (e_value=9e-147) | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic acid binding | chr3:9669508-9671273 REVERSE LENGTH=477;; (*ITAG) Solyc10g047120.1.1 (e_value=2e-171) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35318939-35325054 transcript_region:SL2.40ch10:35318939..35325054- go_terms:GO:0005515,GO:0004809 functional_description:"tRNA guanosine-2'-O-methyltransferase TRM11 homolog (AHRD V1 **** TRM11_MOUSE); contains Interpro domain(s) IPR016691 tRNA guanosine-2'-O-methyltransferase, TRM11 "; GO:0005515,GO:0004809 NbS00034535g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|88 NbS00052047g0003.1 protein AED:0.02 eAED:0.02 QI:1224|1|1|1|0|0.5|2|0|125; (*GB) gi|359484681|ref|XP_002262830.2| (e_value=1e-31) PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera];; (*TAIR) AT1G15740.1 (e_value=3e-20) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc07g007420.2.1 (e_value=1e-62) genomic_reference:SL2.40ch07 gene_region:2138704-2139677 transcript_region:SL2.40ch07:2138704..2139677- functional_description:"Leucine-rich repeat family protein (AHRD V1 **-- D7KDI8_ARALY)"; NbS00052047g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.75|1|0.72|0.75|12|0|512; (*GB) gi|224144084|ref|XP_002325180.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q52T38|ZDH22_ARATH (e_value=0.0) S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1;; (*TAIR) AT5G20350.1 (e_value=0.0) | Symbols: TIP1 | Ankyrin repeat family protein with DHHC zinc finger domain | chr5:6876772-6881102 FORWARD LENGTH=620;; (*ITAG) Solyc07g007430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016417,GO:0000035 NbS00041553g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|255545192|ref|XP_002513657.1| (e_value=1e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25670.2 (e_value=2e-44) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). | chr4:13085431-13085997 REVERSE LENGTH=188;; (*ITAG) Solyc03g008000.1.1 (e_value=1e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2470707-2471348 transcript_region:SL2.40ch03:2470707..2471348+ go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6N7 (AHRD V1 ***- Q9LTG2_ARATH)"; GO:0005515 NbS00041553g0012.1 protein AED:0.49 eAED:0.81 QI:90|0.5|0|0.66|1|1|3|0|128; (*GB) gi|302143805|emb|CBI22666.3| (e_value=8e-44) unnamed protein product [Vitis vinifera]; NbS00041553g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|332; (*GB) gi|156865908|gb|ABU96467.1| (e_value=7e-180) plastid division regulator MinD [Nicotiana tabacum];; (*SWP) sp|Q9MBA2|MIND1_ARATH (e_value=7e-164) Putative septum site-determining protein minD homolog, chloroplastic OS=Arabidopsis thaliana GN=MIND1 PE=1 SV=1;; (*TAIR) AT5G24020.1 (e_value=6e-165) | Symbols: MIND, ARC11, ATMIND1 | septum site-determining protein (MIND) | chr5:8116731-8117711 FORWARD LENGTH=326;; (*ITAG) Solyc03g007980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2465101-2466096 transcript_region:SL2.40ch03:2465101..2466096- go_terms:GO:0042803,GO:0030899 functional_description:"Septum site-determining protein MinD (AHRD V1 ***- D8FVX6_9CYAN); contains Interpro domain(s) IPR010223 Septum site-determining protein MinD "; GO:0042803,GO:0030899 NbS00041553g0016.1 protein AED:0.22 eAED:0.22 QI:522|0.75|0.8|1|0.5|0.2|5|301|235; (*GB) gi|225464567|ref|XP_002273259.1| (e_value=6e-124) PREDICTED: UPF0326 protein At4g17486-like [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=9e-18) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT4G25660.1 (e_value=4e-105) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:13083677-13084989 FORWARD LENGTH=255;; (*ITAG) Solyc03g008010.2.1 (e_value=2e-149) genomic_reference:SL2.40ch03 gene_region:2471904-2478161 transcript_region:SL2.40ch03:2471904..2478161- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00041553g0011.1 protein AED:0.45 eAED:0.45 QI:12|0|0|0.5|0|0|2|0|51; (*ITAG) Solyc03g007990.1.1 (e_value=1e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:2470363-2470518 transcript_region:SL2.40ch03:2470363..2470518+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011447g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|5852154|emb|CAB55501.1| (e_value=1e-163) tyramine hydroxycinnamoyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=8e-165) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39030.1 (e_value=1e-49) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16298260-16298946 FORWARD LENGTH=228;; (*ITAG) Solyc08g006730.1.1 (e_value=9e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1285638-1286318 transcript_region:SL2.40ch08:1285638..1286318+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00044493g0014.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|565; (*GB) gi|255572288|ref|XP_002527083.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G08810.1 (e_value=0.0) | Symbols: SUB1 | calcium ion binding | chr4:5616204-5617862 REVERSE LENGTH=552;; (*ITAG) Solyc01g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:478540-480386 transcript_region:SL2.40ch01:478540..480386- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00044493g0015.1 protein AED:0.48 eAED:0.56 QI:63|0.5|0.4|1|1|1|5|0|98; (*GB) gi|255582564|ref|XP_002532065.1| (e_value=5e-37) peptidyl-tRNA hydrolase, putative [Ricinus communis];; (*SWP) sp|Q6NLS8|PTHM_ARATH (e_value=9e-30) Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1;; (*TAIR) AT5G19830.1 (e_value=7e-31) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:6703383-6705125 FORWARD LENGTH=219;; (*ITAG) Solyc02g086150.2.1 (e_value=6e-23) genomic_reference:SL2.40ch02 gene_region:43481159-43484960 transcript_region:SL2.40ch02:43481159..43484960- go_terms:GO:0005515,GO:0004045 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 **** D7M817_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515,GO:0004045 NbS00026249g0003.1 protein AED:0.27 eAED:0.27 QI:80|1|1|1|0.66|0.5|4|457|131; (*GB) gi|350539449|ref|NP_001234138.1| (e_value=2e-72) profilin [Solanum lycopersicum];; (*SWP) sp|O65812|PROF1_HEVBR (e_value=8e-73) Profilin-1 OS=Hevea brasiliensis PE=1 SV=1;; (*TAIR) AT2G19760.1 (e_value=6e-63) | Symbols: PFN1, PRF1 | profilin 1 | chr2:8517074-8518067 REVERSE LENGTH=131;; (*ITAG) Solyc11g070130.1.1 (e_value=3e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51738809-51741342 transcript_region:SL2.40ch11:51738809..51741342+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q8VWR0_SOLLC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00026249g0014.1 protein AED:0.09 eAED:0.09 QI:297|0.66|0.75|1|0.66|0.5|4|430|512; (*GB) gi|225445059|ref|XP_002283473.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Vitis vinifera];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT5G56590.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22907521-22909436 FORWARD LENGTH=506;; (*ITAG) Solyc12g008580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1968665-1973480 transcript_region:SL2.40ch12:1968665..1973480+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 ***- B6TCY1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00026249g0019.1 protein AED:0.18 eAED:0.19 QI:0|1|0.87|1|0.86|0.87|16|0|599; (*GB) gi|225445067|ref|XP_002280299.1| (e_value=0.0) PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|Q8KPU9|SYR_SYNE7 (e_value=0.0) Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2;; (*TAIR) AT4G26300.1 (e_value=0.0) | Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642;; (*ITAG) Solyc12g008570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1956456-1966721 transcript_region:SL2.40ch12:1956456..1966721+ go_terms:GO:0006420,GO:0005737 functional_description:"Arginyl-tRNA synthetase (AHRD V1 ***- O23247_ARATH); contains Interpro domain(s) IPR001278 Arginyl-tRNA synthetase, class Ic "; GO:0006420,GO:0005737 NbS00026249g0017.1 protein AED:0.20 eAED:0.28 QI:0|0|0|1|0|0|3|0|201; (*GB) gi|296085337|emb|CBI29069.3| (e_value=2e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54XD8|IF2G_DICDI (e_value=2e-46) Eukaryotic translation initiation factor 2 subunit 3 OS=Dictyostelium discoideum GN=eif2s3 PE=2 SV=1;; (*TAIR) AT4G18330.2 (e_value=2e-57) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr4:10126747-10128587 FORWARD LENGTH=471;; (*ITAG) Solyc12g099470.1.1 (e_value=5e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00052083g0016.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.5|0|0.5|2|0|294; (*GB) gi|255574097|ref|XP_002527964.1| (e_value=5e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G31410.2 (e_value=3e-107) | Symbols: | Protein of unknown function (DUF1644) | chr4:15244259-15245474 FORWARD LENGTH=308;; (*ITAG) Solyc12g096460.1.1 (e_value=2e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63715796-63717959 transcript_region:SL2.40ch12:63715796..63717959+ functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00052083g0015.1 protein AED:0.24 eAED:0.26 QI:0|0|0|0.66|0.5|0.66|3|0|212 NbS00052083g0010.1 protein AED:0.30 eAED:0.31 QI:146|0.8|0.66|1|0.8|0.83|6|0|142; (*GB) gi|225465617|ref|XP_002266754.1| (e_value=1e-68) PREDICTED: transcription initiation factor TFIID subunit 10 [Vitis vinifera];; (*SWP) sp|Q8K0H5|TAF10_MOUSE (e_value=5e-31) Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1;; (*TAIR) AT4G31720.1 (e_value=1e-68) | Symbols: TAFII15, TAF10, STG1 | TBP-associated factor II 15 | chr4:15354223-15355704 REVERSE LENGTH=134;; (*ITAG) Solyc12g096470.1.1 (e_value=4e-83) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63718803-63721861 transcript_region:SL2.40ch12:63718803..63721861- go_terms:GO:0016251 functional_description:"Transcription initiation factor TFIID subunit 10 (AHRD V1 **** C1BGY2_ONCMY); contains Interpro domain(s) IPR003923 Transcription initiation factor TFIID, 23-30 kDa subunit "; GO:0016251 NbS00006484g0024.1 protein AED:0.13 eAED:0.17 QI:302|0|0.33|1|0|0.33|3|0|823; (*GB) gi|225430316|ref|XP_002282750.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262916 [Vitis vinifera];; (*TAIR) AT4G32190.1 (e_value=2e-138) | Symbols: | Myosin heavy chain-related protein | chr4:15545052-15547689 FORWARD LENGTH=783;; (*ITAG) Solyc08g022030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:10722614-10726999 transcript_region:SL2.40ch08:10722614..10726999- functional_description:"AT4G32190-like protein (Fragment) (AHRD V1 *-*- D6PRA9_9BRAS)"; NbS00006484g0025.1 protein AED:0.46 eAED:0.59 QI:0|0|0|0.12|0.57|0.62|8|0|293 NbS00006484g0022.1 protein AED:0.18 eAED:0.18 QI:277|1|1|1|0.8|0.66|6|636|215; (*GB) gi|296082049|emb|CBI21054.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G25340.1 (e_value=2e-34) | Symbols: | Ubiquitin-like superfamily protein | chr5:8793238-8794211 FORWARD LENGTH=208;; (*ITAG) Solyc08g023630.2.1 (e_value=7e-90) genomic_reference:SL2.40ch08 gene_region:17628214-17630078 transcript_region:SL2.40ch08:17628214..17630078+ functional_description:"U11/U12 small nuclear ribonucleoprotein 25 kDa protein (AHRD V1 *-*- SNR25_MOUSE)"; NbS00006484g0027.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|0|0|2|0|161; (*GB) gi|3047068|gb|AAC13582.1| (e_value=2e-32) similar to maize transposon MuDR (GB:M76978) [Arabidopsis thaliana];; (*TAIR) AT1G49920.1 (e_value=2e-14) | Symbols: | MuDR family transposase | chr1:18481798-18484233 REVERSE LENGTH=785;; (*ITAG) Solyc08g016290.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00006484g0023.1 protein AED:0.23 eAED:0.23 QI:284|0.8|0.45|0.90|0.5|0.54|11|590|390; (*GB) gi|225430308|ref|XP_002285174.1| (e_value=0.0) PREDICTED: UDP-sugar transporter UST74c [Vitis vinifera];; (*SWP) sp|Q15B89|S35D2_PIG (e_value=7e-34) UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment) OS=Sus scrofa GN=SLC35D2 PE=2 SV=1;; (*TAIR) AT4G32272.1 (e_value=9e-168) | Symbols: | Nucleotide/sugar transporter family protein | chr4:15577195-15579689 REVERSE LENGTH=344;; (*ITAG) Solyc07g007990.2.1 (e_value=1e-135) genomic_reference:SL2.40ch07 gene_region:2685699-2689886 transcript_region:SL2.40ch07:2685699..2689886- go_terms:GO:0005463 functional_description:"UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (AHRD V1 **** C1BM09_OSMMO); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005463 NbS00006484g0021.1 protein AED:0.22 eAED:0.24 QI:0|0.37|0.33|1|0.87|0.77|9|452|679; (*GB) gi|255548886|ref|XP_002515499.1| (e_value=0.0) protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=1e-35) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT4G32250.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15570285-15572528 REVERSE LENGTH=611;; (*ITAG) Solyc01g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00006484g0005.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|461595|sp|P31853.2|ATPX_SPIOL (e_value=3e-52) RecName: Full=ATP synthase subunit b', chloroplastic; AltName: Full=ATP synthase F(0) sector subunit b'; AltName: Full=ATPase subunit II; Flags: Precursor;; (*SWP) sp|P31853|ATPX_SPIOL (e_value=9e-54) ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2;; (*TAIR) AT4G32260.1 (e_value=2e-40) | Symbols: | ATPase, F0 complex, subunit B/B', bacterial/chloroplast | chr4:15573859-15574586 REVERSE LENGTH=219;; (*ITAG) Solyc06g066000.1.1 (e_value=3e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37752991-37753662 transcript_region:SL2.40ch06:37752991..37753662- go_terms:GO:0045263 functional_description:"ATP synthase subunit b&apos (AHRD V1 ***- D8G4T7_9CYAN); contains Interpro domain(s) IPR002146 ATPase, F0 complex, subunit B/B', bacterial and chloroplast "; GO:0045263 NbS00015792g0006.1 protein AED:0.20 eAED:0.20 QI:341|1|1|1|0.88|0.8|10|200|491; (*GB) gi|359472555|ref|XP_003631164.1| (e_value=0.0) PREDICTED: vacuolar fusion protein CCZ1 homolog isoform 2 [Vitis vinifera];; (*SWP) sp|A7RJI7|CCZ1_NEMVE (e_value=8e-20) Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1;; (*TAIR) AT1G80910.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1712) | chr1:30401143-30403466 FORWARD LENGTH=497;; (*ITAG) Solyc02g062110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28258526-28271917 transcript_region:SL2.40ch02:28258526..28271917- functional_description:"UPF0550 protein C7orf28 homolog (AHRD V1 *-*- CG028_BOVIN); contains Interpro domain(s) IPR019158 Protein of unknown function DUF2049 "; NbS00015792g0008.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|64; (*GB) gi|27151816|gb|AAN87055.1| (e_value=2e-26) tuber-induction protein [Solanum tuberosum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=2e-22) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=7e-21) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=2e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00015792g0007.1 protein AED:0.37 eAED:0.55 QI:54|0|0|1|0|0.5|2|0|74; (*GB) gi|321149991|gb|ADW66143.1| (e_value=7e-31) DnaJ like-protein [Solanum nigrum];; (*SWP) sp|P42824|DNJH2_ALLPO (e_value=2e-28) DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=4e-27) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=7e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00004714g0008.1 protein AED:0.25 eAED:0.25 QI:76|0.5|0.33|0.66|1|0.66|3|0|80; (*GB) gi|297738644|emb|CBI27889.3| (e_value=5e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13898.1 (e_value=3e-13) | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). | chr3:4584011-4584334 FORWARD LENGTH=107;; (*ITAG) Solyc03g121790.2.1 (e_value=1e-14) genomic_reference:SL2.40ch03 gene_region:63898644-63899251 transcript_region:SL2.40ch03:63898644..63899251+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 3 (AHRD V1 ***- EPFL3_ARATH)"; NbS00024829g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|174; (*GB) gi|297745775|emb|CBI15831.3| (e_value=8e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G30395.1 (e_value=7e-28) | Symbols: ATOFP17, OFP17 | ovate family protein 17 | chr2:12954409-12955083 REVERSE LENGTH=195;; (*ITAG) Solyc06g082450.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44545426-44546437 transcript_region:SL2.40ch06:44545426..44546437- functional_description:"ATOFP17/OFP17 (AHRD V1 ***- D7LBN3_ARALY)"; NbS00024829g0011.1 protein AED:0.13 eAED:0.13 QI:762|1|1|1|1|1|6|696|615; (*GB) gi|164374639|gb|ABY52426.1| (e_value=0.0) NN mitogen-activated protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LVL5|WNK4_ARATH (e_value=0.0) Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1;; (*TAIR) AT5G58350.1 (e_value=0.0) | Symbols: WNK4, ZIK2 | with no lysine (K) kinase 4 | chr5:23585505-23587681 FORWARD LENGTH=571;; (*ITAG) Solyc06g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44554015-44559461 transcript_region:SL2.40ch06:44554015..44559461- go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00024829g0018.1 protein AED:0.06 eAED:0.06 QI:493|1|1|1|0.5|0.2|5|165|212; (*GB) gi|224120306|ref|XP_002331015.1| (e_value=3e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M547|FLS_EUSER (e_value=4e-50) Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1;; (*TAIR) AT5G20400.1 (e_value=8e-91) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6894871-6896185 FORWARD LENGTH=348;; (*ITAG) Solyc10g076840.1.1 (e_value=2e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59131795-59139979 transcript_region:SL2.40ch10:59131795..59139979- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00031125g0002.1 protein AED:0.30 eAED:0.30 QI:799|0.5|0.33|0.66|1|0.66|3|383|47 NbS00059010g0003.1 protein AED:0.13 eAED:0.13 QI:217|1|1|1|0.5|0.4|5|413|154; (*GB) gi|225441700|ref|XP_002282874.1| (e_value=8e-41) PREDICTED: protein cornichon homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9C7D7|CNIH1_ARATH (e_value=6e-34) Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1;; (*TAIR) AT3G12180.1 (e_value=4e-35) | Symbols: | Cornichon family protein | chr3:3883464-3884570 FORWARD LENGTH=146;; (*ITAG) Solyc03g063970.2.1 (e_value=1e-68) genomic_reference:SL2.40ch03 gene_region:34545550-34556117 transcript_region:SL2.40ch03:34545550..34556117- go_terms:GO:0016020 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 *--- B6T2L9_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016020 NbS00032498g0005.1 protein AED:0.02 eAED:0.02 QI:99|1|0.66|1|1|1|3|0|170; (*GB) gi|255579281|ref|XP_002530486.1| (e_value=6e-65) ARF GTPase activator, putative [Ricinus communis];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-34) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT5G37740.1 (e_value=3e-59) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:14992148-14993431 FORWARD LENGTH=168;; (*ITAG) Solyc02g063360.2.1 (e_value=1e-81) genomic_reference:SL2.40ch02 gene_region:30004241-30007916 transcript_region:SL2.40ch02:30004241..30007916- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7MIH2_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00032498g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|356569572|ref|XP_003552973.1| (e_value=4e-50) PREDICTED: probable calcium-binding protein CML27-like isoform 1 [Glycine max];; (*SWP) sp|Q9C8Y1|CML23_ARATH (e_value=2e-43) Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1;; (*TAIR) AT1G66400.1 (e_value=2e-44) | Symbols: CML23 | calmodulin like 23 | chr1:24770856-24771329 REVERSE LENGTH=157;; (*ITAG) Solyc02g063350.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:29992547-29992984 transcript_region:SL2.40ch02:29992547..29992984+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- A8IDP6_CHLRE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00032498g0007.1 protein AED:0.23 eAED:0.48 QI:0|0|0|0.66|0|0|3|0|79; (*GB) gi|57013945|ref|YP_173418.1| (e_value=1e-25) hypothetical protein NitaMp076 [Nicotiana tabacum];; (*SWP) sp|Q04050|NU4M_BRACM (e_value=4e-21) NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris GN=ND4 PE=3 SV=1;; (*ITAG) ATMG00580.1 (e_value=3e-22) | Symbols: NAD4 | NADH dehydrogenase subunit 4 | chrM:161693-169674 FORWARD LENGTH=495;; (*ITAG) Solyc00g013180.1.1 (e_value=5e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10689876-10691222 transcript_region:SL2.40ch00:10689876..10691222- go_terms:GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase chain 4 (AHRD V1 ***- Q5M9Z8_TOBAC); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00059547g0001.1 protein AED:0.29 eAED:0.30 QI:213|1|0.5|1|0|0|2|0|279; (*GB) gi|190607513|gb|ACE79419.1| (e_value=4e-91) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-64) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=7e-44) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=3e-135) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00012559g0006.1 protein AED:0.08 eAED:0.08 QI:148|0.6|0.83|1|0.8|0.83|6|454|181; (*GB) gi|115502466|sp|P43349.2|TCTP_SOLTU (e_value=3e-93) RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP; AltName: Full=p23;; (*SWP) sp|P43349|TCTP_SOLTU (e_value=8e-95) Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2;; (*TAIR) AT3G05540.1 (e_value=5e-85) | Symbols: | Methionine sulfoxide reductase (MSS4-like) family protein | chr3:1606487-1608030 REVERSE LENGTH=168;; (*ITAG) Solyc01g099770.2.1 (e_value=4e-97) genomic_reference:SL2.40ch01 gene_region:81675491-81677536 transcript_region:SL2.40ch01:81675491..81677536+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00041307g0004.1 protein AED:0.34 eAED:0.34 QI:137|0.85|0.75|1|0.71|0.37|8|0|300; (*GB) gi|255573421|ref|XP_002527636.1| (e_value=9e-127) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G32400.3 (e_value=4e-109) | Symbols: TOM2A | tobamovirus multiplication 2A | chr1:11689393-11690873 REVERSE LENGTH=280;; (*ITAG) Solyc08g077220.2.1 (e_value=1e-165) genomic_reference:SL2.40ch08 gene_region:58295865-58302381 transcript_region:SL2.40ch08:58295865..58302381- go_terms:GO:0005515 functional_description:"Tetraspanin family protein (AHRD V1 **-- B6TTZ1_MAIZE); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0005515 NbS00012016g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|106 NbS00012016g0007.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|388503528|gb|AFK39830.1| (e_value=2e-20) unknown [Lotus japonicus];; (*SWP) sp|P56331|IF1A_ONOVI (e_value=2e-19) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=6e-16) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc05g050200.2.1 (e_value=6e-21) genomic_reference:SL2.40ch05 gene_region:59394632-59396589 transcript_region:SL2.40ch05:59394632..59396589+ go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743 NbS00012016g0012.1 protein AED:0.17 eAED:0.21 QI:0|0.71|0.5|1|0.85|0.87|8|0|557; (*GB) gi|229368448|gb|ACQ59090.1| (e_value=0.0) BTB/POZ protein [Nicotiana benthamiana];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=0.0) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.2 (e_value=0.0) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22798069 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00061702g0004.1 protein AED:0.14 eAED:0.14 QI:150|1|1|1|0.85|0.75|8|449|308; (*GB) gi|358249358|ref|NP_001240041.1| (e_value=3e-121) uncharacterized protein LOC100803404 [Glycine max];; (*SWP) sp|Q93WI0|STR12_ARATH (e_value=5e-91) Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1;; (*TAIR) AT5G19370.1 (e_value=4e-92) | Symbols: | rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein | chr5:6524247-6526629 REVERSE LENGTH=299;; (*ITAG) Solyc12g099800.1.1 (e_value=6e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65135132-65139096 transcript_region:SL2.40ch12:65135132..65139096- go_terms:GO:0016853 functional_description:"Rhodanese-like domain containing protein (AHRD V1 *--- B1XHS0_SYNP2); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0016853 NbS00061702g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.57|1|0.66|0.57|7|0|427; (*GB) gi|47271334|emb|CAG27840.1| (e_value=0.0) calcium-dependent protein kinase 17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FMP5|CDPKH_ARATH (e_value=0.0) Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1;; (*TAIR) AT5G12180.1 (e_value=0.0) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc12g099790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65130565-65133955 transcript_region:SL2.40ch12:65130565..65133955+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 17 (AHRD V1 ***- Q6KC53_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00019529g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|7|271|258; (*GB) gi|76573347|gb|ABA46778.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|O24496|GLO2C_ARATH (e_value=2e-153) Hydroxyacylglutathione hydrolase cytoplasmic OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2;; (*TAIR) AT3G10850.1 (e_value=2e-154) | Symbols: GLX2-2, GLY2 | Metallo-hydrolase/oxidoreductase superfamily protein | chr3:3397756-3399522 REVERSE LENGTH=258;; (*ITAG) Solyc06g048530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27690862-27701677 transcript_region:SL2.40ch06:27690862..27701677- go_terms:GO:0004416 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** B6T2Y2_MAIZE); contains Interpro domain(s) IPR017782 Hydroxyacylglutathione hydrolase "; GO:0004416 NbS00019529g0014.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.28|1|0.83|0.85|7|0|335; (*GB) gi|225439088|ref|XP_002265744.1| (e_value=5e-104) PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Vitis vinifera];; (*TAIR) AT5G01960.1 (e_value=4e-103) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc03g095450.2.1 (e_value=6e-113) genomic_reference:SL2.40ch03 gene_region:50014714-50023523 transcript_region:SL2.40ch03:50014714..50023523- go_terms:GO:0008270 functional_description:"RING finger protein 141 (AHRD V1 *--- RN141_CANFA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019529g0012.1 protein AED:0.25 eAED:0.26 QI:9|0.66|0.5|1|0.33|0.75|4|0|409; (*GB) gi|255559755|ref|XP_002520897.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q5MNZ6|WIPI3_HUMAN (e_value=4e-80) WD repeat domain phosphoinositide-interacting protein 3 OS=Homo sapiens GN=WDR45L PE=2 SV=2;; (*TAIR) AT3G56440.1 (e_value=0.0) | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy 18 (ATG18) D | chr3:20926874-20928797 FORWARD LENGTH=391;; (*ITAG) Solyc06g048510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27661455-27665948 transcript_region:SL2.40ch06:27661455..27665948+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00019529g0114.1 protein AED:0.03 eAED:0.03 QI:90|1|0.87|1|0.42|0.37|8|0|1059 NbS00019529g0116.1 protein AED:0.21 eAED:0.21 QI:440|0.87|0.77|0.88|0.62|0.55|9|0|487 NbS00019529g0118.1 protein AED:0.24 eAED:0.27 QI:0|0|0.33|1|0|0.66|3|708|217 NbS00012402g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.16|1|1|6|0|133; (*GB) gi|334185111|ref|NP_187238.2| (e_value=3e-40) anaphase-promoting complex subunit 11 [Arabidopsis thaliana];; (*SWP) sp|Q9M9L0|APC11_ARATH (e_value=2e-39) Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2;; (*TAIR) AT3G05870.2 (e_value=6e-43) | Symbols: APC11 | anaphase-promoting complex/cyclosome 11 | chr3:1753961-1754802 FORWARD LENGTH=87;; (*ITAG) Solyc01g102270.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:82855041-82858807 transcript_region:SL2.40ch01:82855041..82858807+ functional_description:"Anaphase promoting complex subunit 11 (AHRD V1 ***- D7MN37_ARALY)"; NbS00014899g0003.1 protein AED:0.22 eAED:0.38 QI:3|0.5|0.57|1|0.83|0.85|7|514|272; (*GB) gi|357110869|ref|XP_003557238.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100836371 [Brachypodium distachyon];; (*TAIR) AT4G22740.2 (e_value=4e-33) | Symbols: | glycine-rich protein | chr4:11944050-11945565 REVERSE LENGTH=356;; (*ITAG) Solyc01g091260.2.1 (e_value=5e-81) genomic_reference:SL2.40ch01 gene_region:76682184-76686338 transcript_region:SL2.40ch01:76682184..76686338- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00001310g0002.1 protein AED:0.11 eAED:0.15 QI:267|0|0.5|1|0|1|2|0|316; (*GB) gi|225459453|ref|XP_002284359.1| (e_value=3e-103) PREDICTED: uncharacterized protein LOC100259117 [Vitis vinifera];; (*TAIR) AT1G68140.3 (e_value=4e-74) | Symbols: | Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=334;; (*ITAG) Solyc06g067970.1.1 (e_value=4e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38517926-38518774 transcript_region:SL2.40ch06:38517926..38518774- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00028263g0008.1 protein AED:0.15 eAED:0.15 QI:233|1|1|1|1|1|2|387|171; (*GB) gi|224094378|ref|XP_002310150.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66800.1 (e_value=1e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671433-26672116 FORWARD LENGTH=183;; (*ITAG) Solyc02g065020.1.1 (e_value=8e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30718020-30718665 transcript_region:SL2.40ch02:30718020..30718665+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028263g0010.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.25|0.33|0.25|4|0|216 NbS00000179g0003.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|211; (*ITAG) Solyc00g027140.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12390165-12393585 transcript_region:SL2.40ch00:12390165..12393585- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00000179g0004.1 protein AED:0.26 eAED:0.51 QI:0|0|0|1|0|0|3|0|121; (*ITAG) Solyc12g062880.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00038178g0012.1 protein AED:0.17 eAED:0.17 QI:32|0.75|0.8|1|0.25|0.4|5|148|542; (*GB) gi|86212377|gb|ABC87761.1| (e_value=0.0) JAR1-like protein [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00057294g0003.1 protein AED:0.40 eAED:0.40 QI:0|1|0|1|1|1|2|0|222; (*GB) gi|226088538|dbj|BAH37015.1| (e_value=9e-164) NtRab11D [Nicotiana tabacum];; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=1e-164) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1;; (*TAIR) AT5G65270.1 (e_value=3e-142) | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226;; (*ITAG) Solyc11g010100.1.1 (e_value=4e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00030638g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.83|1|1|1|6|139|207; (*GB) gi|225444750|ref|XP_002279119.1| (e_value=2e-142) PREDICTED: mps one binder kinase activator-like 1 [Vitis vinifera];; (*SWP) sp|Q8GYX0|MOB1_ARATH (e_value=5e-134) MOB kinase activator-like 1 OS=Arabidopsis thaliana GN=At4g19045 PE=2 SV=1;; (*TAIR) AT5G45550.1 (e_value=6e-137) | Symbols: | Mob1/phocein family protein | chr5:18462284-18464840 FORWARD LENGTH=215;; (*ITAG) Solyc07g041730.2.1 (e_value=2e-146) genomic_reference:SL2.40ch07 gene_region:51399399-51402969 transcript_region:SL2.40ch07:51399399..51402969+ go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6TBL6_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein "; GO:0019900 NbS00009623g0004.1 protein AED:0.13 eAED:0.13 QI:419|1|0.75|1|0.33|0.5|4|0|174; (*GB) gi|4138265|emb|CAA06925.1| (e_value=8e-113) Avr9 elicitor response protein [Nicotiana tabacum];; (*SWP) sp|Q9LM60|B3GT5_ARATH (e_value=1e-55) Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1;; (*TAIR) AT1G77810.2 (e_value=4e-57) | Symbols: | Galactosyltransferase family protein | chr1:29260899-29263001 REVERSE LENGTH=384;; (*ITAG) Solyc11g013490.1.1 (e_value=3e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6543160-6549507 transcript_region:SL2.40ch11:6543160..6549507+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00051568g0005.1 protein AED:0.08 eAED:0.08 QI:349|0.75|0.4|1|0.75|0.6|5|0|285; (*GB) gi|147771889|emb|CAN60253.1| (e_value=2e-125) hypothetical protein VITISV_026158 [Vitis vinifera];; (*TAIR) AT2G38320.1 (e_value=3e-112) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc02g082950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41139450-41141750 transcript_region:SL2.40ch02:41139450..41141750+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 ***- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00004712g0006.1 protein AED:0.10 eAED:0.10 QI:52|1|1|1|0.75|0.6|5|167|576; (*GB) gi|68300884|gb|AAY89374.1| (e_value=0.0) beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=0.0) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=0.0) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc09g091030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65730190-65735790 transcript_region:SL2.40ch09:65730190..65735790+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** E0AE02_SOLLC); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00007370g0014.1 protein AED:0.18 eAED:0.22 QI:0|0|0|0.77|0.62|0.55|9|0|1556; (*GB) gi|297741555|emb|CBI32687.3| (e_value=9e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G53320.1 (e_value=2e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink). | chr3:19769397-19772278 REVERSE LENGTH=553;; (*ITAG) Solyc09g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00007370g0004.1 protein AED:0.41 eAED:0.59 QI:155|0|0.5|1|0|0.5|2|0|342; (*GB) gi|297741555|emb|CBI32687.3| (e_value=6e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09670.2 (e_value=8e-47) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726;; (*ITAG) Solyc09g007340.2.1 (e_value=1e-70) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00007370g0019.1 protein AED:0.10 eAED:0.10 QI:88|1|1|1|0.25|0.4|5|393|132; (*GB) gi|77999293|gb|ABB16993.1| (e_value=6e-88) unknown [Solanum tuberosum];; (*SWP) sp|P46297|RS23_FRAAN (e_value=4e-88) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=2e-85) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=1e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00007370g0020.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0.25|0.75|1|1|4|0|611; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=1e-128) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=1e-129) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00009527g0005.1 protein AED:0.09 eAED:0.09 QI:276|0.5|0.66|1|0|0.66|3|242|319; (*GB) gi|359495848|ref|XP_002266518.2| (e_value=4e-86) PREDICTED: dof zinc finger protein DOF5.7-like [Vitis vinifera];; (*SWP) sp|Q9LSL6|DOF57_ARATH (e_value=9e-33) Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1;; (*TAIR) AT5G65590.1 (e_value=7e-34) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26212084-26213034 REVERSE LENGTH=316;; (*ITAG) Solyc11g010940.1.1 (e_value=1e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3987715-3989539 transcript_region:SL2.40ch11:3987715..3989539- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00026565g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|0.75|0.33|0.75|4|0|1238; (*GB) gi|255543813|ref|XP_002512969.1| (e_value=0.0) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc07g032100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:34994261-35003424 transcript_region:SL2.40ch07:34994261..35003424+ go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00026565g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|57013883|ref|YP_173357.1| (e_value=5e-37) hypothetical protein NitaMp009 [Nicotiana tabacum]; NbS00011823g0005.1 protein AED:0.38 eAED:0.38 QI:0|0.33|0|0.57|0.66|0.85|7|0|475; (*GB) gi|379987682|gb|AFD22621.1| (e_value=0.0) dicer-like 4 protein [Nicotiana attenuata];; (*SWP) sp|P84634|DCL4_ARATH (e_value=1e-136) Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2;; (*TAIR) AT5G20320.1 (e_value=1e-137) | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:6859571-6869068 REVERSE LENGTH=1702;; (*ITAG) Solyc07g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00013742g0002.1 protein AED:0.08 eAED:0.53 QI:0|0|0|1|1|1|2|0|218; (*ITAG) Solyc07g052950.2.1 (e_value=1e-31) genomic_reference:SL2.40ch07 gene_region:58677015-58677570 transcript_region:SL2.40ch07:58677015..58677570- functional_description:"Unknown Protein (AHRD V1)"; NbS00012744g0005.1 protein AED:0.12 eAED:0.12 QI:373|0.75|0.4|1|0.5|0.4|5|0|239; (*GB) gi|225448924|ref|XP_002266821.1| (e_value=4e-130) PREDICTED: cysteine proteinase 15A-like [Vitis vinifera];; (*SWP) sp|P25804|CYSP_PEA (e_value=1e-95) Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G54940.2 (e_value=9e-129) | Symbols: | Papain family cysteine protease | chr3:20354402-20356127 FORWARD LENGTH=367;; (*ITAG) Solyc11g008260.1.1 (e_value=2e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2487182-2489778 transcript_region:SL2.40ch11:2487182..2489778+ go_terms:GO:0006508,GO:0008234 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-- D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00007130g0005.1 protein AED:0.36 eAED:0.36 QI:408|0.5|0.33|1|0|0.33|3|0|133; (*GB) gi|57013934|ref|YP_173407.1| (e_value=1e-22) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00007130g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0.25|0.75|1|1|4|15|371; (*GB) gi|225433017|ref|XP_002284642.1| (e_value=8e-161) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=3e-138) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=3e-139) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010020.2.1 (e_value=8e-164) genomic_reference:SL2.40ch09 gene_region:3447416-3449839 transcript_region:SL2.40ch09:3447416..3449839- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00009480g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|225454575|ref|XP_002263732.1| (e_value=6e-102) PREDICTED: uncharacterized protein LOC100249528 [Vitis vinifera];; (*TAIR) AT5G36970.1 (e_value=9e-71) | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248;; (*ITAG) Solyc03g019920.1.1 (e_value=4e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:6805210-6805953 transcript_region:SL2.40ch03:6805210..6805953+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00009480g0031.1 protein AED:0.03 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|219; (*GB) gi|1762933|gb|AAC49969.1| (e_value=6e-127) tumor-related protein [Nicotiana tabacum];; (*SWP) sp|P13087|MIRA_RICDU (e_value=6e-61) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=3e-69) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g020010.1.1 (e_value=2e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00009480g0021.1 protein AED:0.16 eAED:0.18 QI:277|0.71|0.75|1|0.85|0.75|8|336|245; (*GB) gi|225438601|ref|XP_002280684.1| (e_value=8e-89) PREDICTED: uncharacterized protein LOC100259371 [Vitis vinifera];; (*TAIR) AT4G39630.1 (e_value=3e-60) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18397749-18399263 REVERSE LENGTH=233;; (*ITAG) Solyc03g019910.2.1 (e_value=3e-120) genomic_reference:SL2.40ch03 gene_region:6801923-6805520 transcript_region:SL2.40ch03:6801923..6805520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009480g0028.1 protein AED:0.20 eAED:0.20 QI:0|0.92|1|1|0.84|0.92|14|217|547; (*GB) gi|359495974|ref|XP_003635124.1| (e_value=0.0) PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera];; (*SWP) sp|O48593|SYNO_ARATH (e_value=0.0) Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3;; (*TAIR) AT4G17300.1 (e_value=0.0) | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:9681558-9684833 FORWARD LENGTH=567;; (*ITAG) Solyc03g019940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6810545-6817858 transcript_region:SL2.40ch03:6810545..6817858+ go_terms:GO:0042802,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** D6YS69_WADCW); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb "; GO:0042802,GO:0004816 NbS00009480g0023.1 protein AED:0.27 eAED:0.28 QI:166|0.7|0.63|1|0.7|0.63|11|0|844; (*GB) gi|147791533|emb|CAN68456.1| (e_value=1e-78) hypothetical protein VITISV_025676 [Vitis vinifera];; (*SWP) sp|Q9C866|PPR65_ARATH (e_value=8e-32) Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1;; (*TAIR) AT1G31430.1 (e_value=6e-33) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:11254025-11255737 REVERSE LENGTH=570;; (*ITAG) Solyc03g019960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6838306-6842587 transcript_region:SL2.40ch03:6838306..6842587+ functional_description:"CDT1a protein (AHRD V1 ***- B6SH61_MAIZE); contains Interpro domain(s) IPR014939 DNA replication factor CDT1-like "; NbS00009480g0020.1 protein AED:0.34 eAED:0.35 QI:0|0.88|0.7|1|0.88|0.9|10|0|337; (*GB) gi|357439037|ref|XP_003589795.1| (e_value=0.0) Serine/threonine protein phosphatase [Medicago truncatula];; (*SWP) sp|Q8LSN3|FYPP_PEA (e_value=0.0) Phytochrome-associated serine/threonine-protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1;; (*TAIR) AT3G19980.1 (e_value=0.0) | Symbols: ATFYPP3, EMB2736, STPP, FYPP3 | flower-specific, phytochrome-associated protein phosphatase 3 | chr3:6962008-6964761 FORWARD LENGTH=303;; (*ITAG) Solyc06g072140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40853594-40859862 transcript_region:SL2.40ch06:40853594..40859862+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** C6TK28_SOYBN); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00009480g0024.1 protein AED:0.15 eAED:0.15 QI:73|1|1|1|1|1|3|260|452; (*GB) gi|225454577|ref|XP_002267544.1| (e_value=5e-155) PREDICTED: uncharacterized protein LOC100254610 [Vitis vinifera];; (*SWP) sp|Q08AW5|CG025_XENLA (e_value=3e-24) UPF0415 protein C7orf25 homolog OS=Xenopus laevis PE=2 SV=1;; (*TAIR) AT1G73380.1 (e_value=2e-125) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:27589100-27590657 FORWARD LENGTH=434;; (*ITAG) Solyc03g019930.2.1 (e_value=1e-133) genomic_reference:SL2.40ch03 gene_region:6806299-6809434 transcript_region:SL2.40ch03:6806299..6809434- functional_description:"UPF0415 protein C7orf25 homolog (AHRD V1 *-*- CG025_DANRE); contains Interpro domain(s) IPR010733 Protein of unknown function DUF1308 "; NbS00009480g0033.1 protein AED:0.24 eAED:0.24 QI:385|0.72|0.83|1|0.90|0.91|12|634|389; (*GB) gi|359489921|ref|XP_002264045.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266486 [Vitis vinifera];; (*TAIR) AT1G73390.3 (e_value=0.0) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:27591079-27594148 REVERSE LENGTH=419;; (*ITAG) Solyc03g019950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6818991-6825581 transcript_region:SL2.40ch03:6818991..6825581- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 **-- Q9FFX3_ARATH); contains Interpro domain(s) IPR004328 BRO1 "; NbS00043587g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|0.66|0.75|4|0|218; (*GB) gi|255639455|gb|ACU20022.1| (e_value=2e-81) unknown [Glycine max];; (*SWP) sp|Q9XJ35|CLPR1_ARATH (e_value=1e-73) ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1;; (*TAIR) AT1G49970.1 (e_value=8e-75) | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic subunit 1 | chr1:18501936-18504462 REVERSE LENGTH=387;; (*ITAG) Solyc10g049710.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41900268-41905411 transcript_region:SL2.40ch10:41900268..41905411+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- B9HMY7_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00012297g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.87|0.87|1|0.25|0.37|32|399|1455; (*GB) gi|302141822|emb|CBI19025.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A4L9P7|PDS5A_RAT (e_value=4e-51) Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1;; (*TAIR) AT1G77600.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:29152890-29162156 REVERSE LENGTH=1410;; (*ITAG) Solyc06g060380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34764560-34793492 transcript_region:SL2.40ch06:34764560..34793492+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 ***- PDS5A_RAT); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00029734g0001.1 protein AED:0.40 eAED:0.40 QI:0|0.33|0.5|0.75|1|1|4|0|146; (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=1e-68) MADS-box transcription factor FBP29 [Petunia x hybrida];; (*SWP) sp|Q41276|AP1_SINAL (e_value=3e-53) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1;; (*TAIR) AT1G69120.1 (e_value=3e-54) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256;; (*ITAG) Solyc02g089210.2.1 (e_value=9e-65) genomic_reference:SL2.40ch02 gene_region:45666857-45671596 transcript_region:SL2.40ch02:45666857..45671596+ go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00018266g0004.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|93; (*GB) gi|388510854|gb|AFK43493.1| (e_value=2e-35) unknown [Medicago truncatula];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=5e-36) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G74500.1 (e_value=4e-37) | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93;; (*ITAG) Solyc06g070910.2.1 (e_value=1e-38) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00017249g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.77|1|0.5|0.44|9|0|1404; (*GB) gi|225454502|ref|XP_002277075.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241322 [Vitis vinifera];; (*TAIR) AT3G61690.1 (e_value=0.0) | Symbols: | nucleotidyltransferases | chr3:22828349-22833477 FORWARD LENGTH=1303;; (*ITAG) Solyc01g095730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78684669-78697111 transcript_region:SL2.40ch01:78684669..78697111+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00017897g0008.1 protein AED:0.26 eAED:0.26 QI:248|1|1|1|0.75|1|5|386|247; (*GB) gi|296082049|emb|CBI21054.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G32270.1 (e_value=1e-42) | Symbols: | Ubiquitin-like superfamily protein | chr4:15575015-15576360 REVERSE LENGTH=239;; (*ITAG) Solyc06g066010.2.1 (e_value=2e-129) genomic_reference:SL2.40ch06 gene_region:37754411-37757648 transcript_region:SL2.40ch06:37754411..37757648- functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- C1C3V0_RANCA); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00017897g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|225430312|ref|XP_002285183.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100250997 [Vitis vinifera];; (*SWP) sp|P31853|ATPX_SPIOL (e_value=6e-50) ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2;; (*TAIR) AT4G32260.1 (e_value=1e-39) | Symbols: | ATPase, F0 complex, subunit B/B', bacterial/chloroplast | chr4:15573859-15574586 REVERSE LENGTH=219;; (*ITAG) Solyc06g066000.1.1 (e_value=2e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37752991-37753662 transcript_region:SL2.40ch06:37752991..37753662- go_terms:GO:0045263 functional_description:"ATP synthase subunit b&apos (AHRD V1 ***- D8G4T7_9CYAN); contains Interpro domain(s) IPR002146 ATPase, F0 complex, subunit B/B', bacterial and chloroplast "; GO:0045263 NbS00017897g0003.1 protein AED:0.00 eAED:0.00 QI:176|0|0.5|1|0|0.5|2|349|129; (*GB) gi|118488240|gb|ABK95939.1| (e_value=2e-36) unknown [Populus trichocarpa];; (*SWP) sp|P14009|14KD_DAUCA (e_value=4e-29) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=1e-32) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc06g065970.1.1 (e_value=5e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37743284-37743664 transcript_region:SL2.40ch06:37743284..37743664+ go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6UGA2_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00017897g0010.1 protein AED:0.46 eAED:0.58 QI:0|0|0|1|0|0|2|0|69 NbS00042635g0003.1 protein AED:0.21 eAED:0.21 QI:236|1|0.71|1|0.83|0.71|7|0|204; (*GB) gi|255539493|ref|XP_002510811.1| (e_value=7e-130) ADP-ribosylation factor, putative [Ricinus communis];; (*SWP) sp|Q63055|ARFRP_RAT (e_value=1e-54) ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1;; (*TAIR) AT5G52210.2 (e_value=2e-119) | Symbols: ATARLB1, ATGB1, GB1 | GTP-binding protein 1 | chr5:21205567-21206840 FORWARD LENGTH=205;; (*ITAG) Solyc10g074630.1.1 (e_value=1e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57508319-57514041 transcript_region:SL2.40ch10:57508319..57514041+ go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor (AHRD V1 ***- B0WVM5_CULQU); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00027666g0006.1 protein AED:0.15 eAED:0.15 QI:94|0.28|0.5|0.87|0.57|0.75|8|171|515; (*GB) gi|1685087|gb|AAC49536.1| (e_value=0.0) diphenol oxidase [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc09g014240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5730476-5734045 transcript_region:SL2.40ch09:5730476..5734045+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00027666g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|0.66|3|0|301; (*GB) gi|297740242|emb|CBI30424.3| (e_value=3e-151) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=5e-134) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=4e-135) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc09g014230.1.1 (e_value=9e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5719532-5722365 transcript_region:SL2.40ch09:5719532..5722365- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00035075g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|255537801|ref|XP_002509967.1| (e_value=2e-51) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G23890.1 (e_value=6e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:12420593-12421345 REVERSE LENGTH=250;; (*ITAG) Solyc08g082400.1.1 (e_value=9e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62383099-62383851 transcript_region:SL2.40ch08:62383099..62383851- functional_description:"Genome sequencing data contig C313 (AHRD V1 *-*- A8YHF7_MICAE)"; NbS00035075g0007.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0|0|2|0|107; (*ITAG) Solyc08g082400.1.1 (e_value=2e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62383099-62383851 transcript_region:SL2.40ch08:62383099..62383851- functional_description:"Genome sequencing data contig C313 (AHRD V1 *-*- A8YHF7_MICAE)"; NbS00000289g0014.1 protein AED:0.11 eAED:0.11 QI:43|1|1|1|0.5|0.33|9|228|279; (*GB) gi|225452314|ref|XP_002272751.1| (e_value=3e-140) PREDICTED: ribosomal RNA-processing protein 8 [Vitis vinifera];; (*SWP) sp|Q84JC0|RRP8_ARATH (e_value=2e-122) Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1;; (*TAIR) AT5G40530.1 (e_value=2e-123) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:16234551-16236100 FORWARD LENGTH=287;; (*ITAG) Solyc02g093390.2.1 (e_value=5e-173) genomic_reference:SL2.40ch02 gene_region:48850317-48853426 transcript_region:SL2.40ch02:48850317..48853426+ go_terms:GO:0008757,GO:0035064 functional_description:"Ribosomal RNA-processing protein (AHRD V1 ***- B6K4Z8_SCHJY); contains Interpro domain(s) IPR007823 Methyltransferase-related "; GO:0008757,GO:0035064 NbS00000289g0009.1 protein AED:0.05 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|275; (*GB) gi|350534898|ref|NP_001234421.1| (e_value=2e-120) CHI protein [Solanum lycopersicum];; (*TAIR) AT3G63170.1 (e_value=5e-39) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc02g067870.2.1 (e_value=3e-123) genomic_reference:SL2.40ch02 gene_region:32544191-32545408 transcript_region:SL2.40ch02:32544191..32545408- go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- Q0G877_CAMSI); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00000289g0013.1 protein AED:0.30 eAED:0.41 QI:0|0.58|0.55|0.94|0.64|0.66|18|0|443; (*GB) gi|168057526|ref|XP_001780765.1| (e_value=2e-34) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q55179|MURJ_SYNY3 (e_value=1e-24) Protein MurJ homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=murJ PE=3 SV=1;; (*ITAG) Solyc02g093400.1.1 (e_value=5e-116) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48853856-48862875 transcript_region:SL2.40ch02:48853856..48862875- functional_description:"Integral membrane protein MviN (AHRD V1 ***- D8G376_9CYAN); contains Interpro domain(s) IPR004268 Flagellin assembly, membrane protein MviN "; NbS00017246g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|327; (*GB) gi|224070855|ref|XP_002303266.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8R431|MGLL_RAT (e_value=1e-27) Monoglyceride lipase OS=Rattus norvegicus GN=Mgll PE=1 SV=1;; (*TAIR) AT1G52760.1 (e_value=0.0) | Symbols: LysoPL2 | lysophospholipase 2 | chr1:19651378-19652576 FORWARD LENGTH=332;; (*ITAG) Solyc03g119980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62544810-62547302 transcript_region:SL2.40ch03:62544810..62547302- go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00058999g0002.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|224066277|ref|XP_002302060.1| (e_value=1e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g066250.1.1 (e_value=2e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60275950-60276354 transcript_region:SL2.40ch09:60275950..60276354+ go_terms:GO:0005622 functional_description:"Transcriptional regulator SUPERMAN (AHRD V1 *--- SUP_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00058999g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|113205274|gb|ABI34321.1| (e_value=6e-25) RNase H family protein [Solanum demissum];; (*ITAG) Solyc06g033980.2.1 (e_value=3e-25) genomic_reference:SL2.40ch06 gene_region:20163363-20164580 transcript_region:SL2.40ch06:20163363..20164580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HUA4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00058999g0004.1 protein AED:0.23 eAED:0.68 QI:0|0|0|1|0|0.5|2|0|95; (*ITAG) Solyc11g063480.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00005236g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|9651810|gb|AAF91282.1|AF233342_1 (e_value=1e-54) DNA-binding protein p24 [Solanum tuberosum];; (*TAIR) AT2G02740.2 (e_value=2e-53) | Symbols: ATWHY3, PTAC11, WHY3 | ssDNA-binding transcriptional regulator | chr2:769389-770993 FORWARD LENGTH=267;; (*ITAG) Solyc05g007100.2.1 (e_value=2e-57) genomic_reference:SL2.40ch05 gene_region:1672964-1676481 transcript_region:SL2.40ch05:1672964..1676481+ go_terms:GO:0042162 functional_description:"DNA-binding protein p24 (AHRD V1 **-* Q9LL85_SOLTU); contains Interpro domain(s) IPR013742 Plant transcription factor "; GO:0042162 NbS00023951g0002.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.42|0.85|1|1|7|0|494; (*GB) gi|359482705|ref|XP_002265218.2| (e_value=2e-88) PREDICTED: uncharacterized protein LOC100247324 [Vitis vinifera];; (*TAIR) AT1G15320.2 (e_value=9e-75) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5272468-5274029 REVERSE LENGTH=289;; (*ITAG) Solyc03g116770.2.1 (e_value=3e-160) genomic_reference:SL2.40ch03 gene_region:60108379-60109601 transcript_region:SL2.40ch03:60108379..60109601+ functional_description:"DNA-binding protein-like protein (AHRD V1 ***- Q9LKB6_ARATH)"; NbS00023951g0006.1 protein AED:0.33 eAED:0.33 QI:0|1|0.9|1|1|1|10|0|490; (*GB) gi|359482375|ref|XP_002265060.2| (e_value=0.0) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=3e-120) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT1G80030.2 (e_value=0.0) | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr1:30105398-30108873 REVERSE LENGTH=500;; (*ITAG) Solyc03g116790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60114726-60125680 transcript_region:SL2.40ch03:60114726..60125680+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00046918g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|224060465|ref|XP_002300213.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21740.1 (e_value=1e-33) | Symbols: | Protein of unknown function (DUF1278) | chr2:9281986-9282363 REVERSE LENGTH=125;; (*ITAG) Solyc04g071640.1.1 (e_value=1e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56200483-56200872 transcript_region:SL2.40ch04:56200483..56200872- functional_description:"ECA1 protein (AHRD V1 *-*- Q53JF8_ORYSJ); contains Interpro domain(s) IPR010701 Protein of unknown function DUF1278 "; NbS00046918g0005.1 protein AED:0.29 eAED:0.30 QI:0|0|0.5|1|0|0.5|2|410|137; (*GB) gi|188509925|gb|ACD56614.1| (e_value=3e-44) predicted protein [Gossypioides kirkii];; (*SWP) sp|Q9STN5|Y4833_ARATH (e_value=1e-33) Uncharacterized protein At4g08330, chloroplastic OS=Arabidopsis thaliana GN=At4g08330 PE=1 SV=1;; (*TAIR) AT4G08330.1 (e_value=8e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:5255384-5256525 REVERSE LENGTH=164;; (*ITAG) Solyc04g071630.2.1 (e_value=8e-70) genomic_reference:SL2.40ch04 gene_region:56191934-56197711 transcript_region:SL2.40ch04:56191934..56197711- functional_description:"Protein-methionine-s-oxide reductase (AHRD V1 **-- D7L9H5_ARALY)"; NbS00046918g0006.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0|0|3|0|180; (*ITAG) Solyc00g269810.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20570950-20572723 transcript_region:SL2.40ch00:20570950..20572723- functional_description:"F-box family protein (AHRD V1 *-*- D7LSF9_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033811g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|225452518|ref|XP_002274991.1| (e_value=3e-39) PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera];; (*TAIR) AT5G14890.1 (e_value=5e-32) | Symbols: | NHL domain-containing protein | chr5:4818056-4821534 FORWARD LENGTH=754;; (*ITAG) Solyc02g087030.1.1 (e_value=2e-94) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:44154224-44154673 transcript_region:SL2.40ch02:44154224..44154673+ functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"; NbS00018247g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|617|723; (*GB) gi|225426422|ref|XP_002270125.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246220 [Vitis vinifera];; (*TAIR) AT4G11450.1 (e_value=9e-120) | Symbols: | Protein of unknown function (DUF3527) | chr4:6959065-6961223 REVERSE LENGTH=694;; (*ITAG) Solyc08g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61346739-61349708 transcript_region:SL2.40ch08:61346739..61349708+ functional_description:"Os10g0550700 protein (Fragment) (AHRD V1 *-*- Q0IVV8_ORYSJ)"; NbS00037282g0003.1 protein AED:0.25 eAED:0.25 QI:233|0.66|0.57|1|0.66|0.71|7|0|482; (*GB) gi|255554110|ref|XP_002518095.1| (e_value=9e-126) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9MAT6|HMG15_ARATH (e_value=3e-105) High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1;; (*TAIR) AT1G04880.1 (e_value=2e-106) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:1376106-1378264 REVERSE LENGTH=448;; (*ITAG) Solyc09g091960.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66506237-66509916 transcript_region:SL2.40ch09:66506237..66509916- go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family protein (AHRD V1 **-- D7KE87_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00018054g0003.1 protein AED:0.04 eAED:0.04 QI:18|1|0.33|1|0.5|0.66|3|0|456; (*GB) gi|225435652|ref|XP_002283361.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Vitis vinifera];; (*SWP) sp|Q9ZQA1|PP188_ARATH (e_value=5e-97) Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1;; (*TAIR) AT2G36730.1 (e_value=3e-98) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15405068-15406573 REVERSE LENGTH=501;; (*ITAG) Solyc01g020340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:29350551-29354410 transcript_region:SL2.40ch01:29350551..29354410+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00018054g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|251; (*GB) gi|224076014|ref|XP_002304873.1| (e_value=1e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55230.1 (e_value=6e-86) | Symbols: | Family of unknown function (DUF716) | chr1:20602895-20603797 FORWARD LENGTH=300;; (*ITAG) Solyc01g017600.2.1 (e_value=2e-129) genomic_reference:SL2.40ch01 gene_region:24335323-24337341 transcript_region:SL2.40ch01:24335323..24337341- functional_description:"Plant viral-response family protein (AHRD V1 **-- B6SQA7_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00045069g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|357436015|ref|XP_003588283.1| (e_value=1e-45) Cytochrome c biogenesis [Medicago truncatula];; (*SWP) sp|P93286|CCMF_ARATH (e_value=2e-35) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=2e-36) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00045069g0015.1 protein AED:0.46 eAED:0.65 QI:0|0|0|1|1|1|2|0|126; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=2e-40) Maturase [Medicago truncatula];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=6e-43) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*ITAG) ATMG01275.1 (e_value=5e-41) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325; NbS00045069g0014.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|100 NbS00045069g0028.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0|6|0|219; (*GB) gi|15809221|gb|AAK00503.1| (e_value=2e-49) cytochrome b [Daucus carota];; (*SWP) sp|Q94S37|CYB_DAUCA (e_value=1e-50) Cytochrome b OS=Daucus carota GN=MT-CYB PE=3 SV=1;; (*ITAG) ATMG00220.1 (e_value=3e-35) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00045069g0026.1 protein AED:0.44 eAED:0.52 QI:0|0|0|1|0|0|3|0|185; (*GB) gi|357436137|ref|XP_003588344.1| (e_value=1e-50) Ribosomal protein L5 [Medicago truncatula];; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-36) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=1e-35) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc07g040970.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00045069g0031.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|146; (*GB) gi|357436015|ref|XP_003588283.1| (e_value=2e-44) Cytochrome c biogenesis [Medicago truncatula];; (*SWP) sp|P93286|CCMF_ARATH (e_value=3e-35) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=3e-40) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=8e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00045069g0032.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|57013999|ref|YP_173470.1| (e_value=2e-14) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=4e-14) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=2e-16) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=4e-18) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00045069g0033.1 protein AED:0.12 eAED:0.91 QI:0|0|0|1|0|0|2|0|88 NbS00045069g0029.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|81; (*GB) gi|57013895|ref|YP_173369.1| (e_value=1e-33) ribosomal protein L5 [Nicotiana tabacum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-31) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=2e-24) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=8e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00045069g0024.1 protein AED:0.58 eAED:0.72 QI:0|0|0|0.66|0|0|3|0|81 NbS00045069g0025.1 protein AED:0.13 eAED:0.33 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|350529085|dbj|BAL03661.1| (e_value=4e-26) photosystem I P700 apoprotein A1 [Bowenia serrulata];; (*SWP) sp|Q9MUK4|PSAA_ENCLE (e_value=2e-27) Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Encephalartos lebomboensis GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=2e-22) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc01g017310.1.1 (e_value=3e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23936390-23936614 transcript_region:SL2.40ch01:23936390..23936614+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- B7T350_9ROSI); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00026057g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|304; (*GB) gi|46241272|gb|AAS82859.1| (e_value=5e-97) geranyl diphosphate synthase small subunit [Antirrhinum majus];; (*SWP) sp|Q39108|GGR_ARATH (e_value=6e-36) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=5e-37) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc07g064660.1.1 (e_value=4e-142) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00042261g0005.1 protein AED:0.05 eAED:0.05 QI:199|1|1|1|0.83|0.76|13|177|731; (*GB) gi|193290712|gb|ACF17664.1| (e_value=0.0) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SJD4|LACS8_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1;; (*TAIR) AT2G04350.2 (e_value=0.0) | Symbols: LACS8 | AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720;; (*ITAG) Solyc12g009040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2335997-2339861 transcript_region:SL2.40ch12:2335997..2339861+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase 4 (AHRD V1 **** C0HA93_SALSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00042261g0006.1 protein AED:0.03 eAED:0.03 QI:284|1|1|1|0.8|0.66|6|400|251; (*GB) gi|224087951|ref|XP_002308270.1| (e_value=7e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZH2|NFYA3_ARATH (e_value=9e-41) Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2;; (*TAIR) AT1G72830.1 (e_value=7e-42) | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=340;; (*ITAG) Solyc12g009050.1.1 (e_value=2e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2340487-2342273 transcript_region:SL2.40ch12:2340487..2342273- go_terms:GO:0005634,GO:0016602 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 *-*- B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634,GO:0016602 NbS00000664g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|130846|sp|P11670.1|PRB1_TOBAC (e_value=2e-73) RecName: Full=Basic form of pathogenesis-related protein 1; Short=PRP 1; Flags: Precursor;; (*SWP) sp|P11670|PRB1_TOBAC (e_value=6e-75) Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G14580.1 (e_value=2e-47) | Symbols: ATPRB1, PRB1 | basic pathogenesis-related protein 1 | chr2:6225703-6226188 REVERSE LENGTH=161;; (*ITAG) Solyc01g106620.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00000664g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|19970|emb|CAA47374.1| (e_value=4e-92) prb-1b [Nicotiana tabacum];; (*SWP) sp|P11670|PRB1_TOBAC (e_value=1e-78) Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT4G33720.1 (e_value=4e-52) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=4e-91) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00000664g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|186; (*GB) gi|225425098|ref|XP_002272514.1| (e_value=1e-26) PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=6e-24) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=4e-25) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00031336g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|21666314|gb|AAM73656.1|AF390211_1 (e_value=0.0) AER [Nicotiana tabacum];; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=4e-68) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G01210.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:84554-85981 FORWARD LENGTH=475;; (*ITAG) Solyc09g014280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5772957-5774339 transcript_region:SL2.40ch09:5772957..5774339+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00011427g0010.1 protein AED:0.14 eAED:0.17 QI:0|0.85|0.62|1|1|1|8|0|1186; (*GB) gi|225452161|ref|XP_002263932.1| (e_value=0.0) PREDICTED: protein TPLATE-like [Vitis vinifera];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=0.0) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=0.0) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00011427g0003.1 protein AED:0.31 eAED:0.31 QI:0|0.6|0.66|1|1|1|6|486|175; (*GB) gi|225460187|ref|XP_002279511.1| (e_value=2e-86) PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera];; (*SWP) sp|O80543|Y1280_ARATH (e_value=3e-81) Uncharacterized protein At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2;; (*TAIR) AT1G22800.1 (e_value=2e-82) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8072020-8074039 FORWARD LENGTH=355;; (*ITAG) Solyc10g012160.2.1 (e_value=2e-99) genomic_reference:SL2.40ch10 gene_region:4506386-4514163 transcript_region:SL2.40ch10:4506386..4514163- go_terms:GO:0005163,GO:0005245 functional_description:"Methyltransferase type 11 (AHRD V1 ***- A7HTX1_PARL1); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0005163,GO:0005245 NbS00011427g0009.1 protein AED:0.39 eAED:0.39 QI:34|0|0.5|0.5|0|0|2|386|22 NbS00032343g0005.1 protein AED:0.10 eAED:0.10 QI:68|1|1|1|1|1|6|229|581; (*GB) gi|356527433|ref|XP_003532315.1| (e_value=0.0) PREDICTED: laccase-17-like [Glycine max];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00032343g0006.1 protein AED:0.18 eAED:0.18 QI:75|1|1|1|0.8|0.83|6|265|242; (*GB) gi|60459405|gb|AAX20048.1| (e_value=9e-112) CPRD49-like protein [Capsicum annuum];; (*SWP) sp|Q9SRM5|CPR49_ARATH (e_value=7e-88) GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1;; (*TAIR) AT3G11210.1 (e_value=5e-89) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256;; (*ITAG) Solyc10g085170.1.1 (e_value=9e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63770842-63773387 transcript_region:SL2.40ch10:63770842..63773387+ go_terms:GO:0006629,GO:0016787 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6T5T9_MAIZE); contains Interpro domain(s) IPR013831 Esterase, SGNH hydrolase-type, subgroup "; GO:0006629,GO:0016787 NbS00044621g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|169930141|gb|ACB05668.1| (e_value=4e-109) cyclophilin [Capsicum annuum];; (*SWP) sp|P21568|CYPH_SOLLC (e_value=7e-107) Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1;; (*TAIR) AT2G21130.1 (e_value=5e-94) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:9055619-9056143 REVERSE LENGTH=174;; (*ITAG) Solyc01g111170.2.1 (e_value=5e-108) genomic_reference:SL2.40ch01 gene_region:89284136-89285146 transcript_region:SL2.40ch01:89284136..89285146+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00004164g0008.1 protein AED:0.36 eAED:0.36 QI:310|0.66|0.28|1|0.16|0.14|7|0|248; (*GB) gi|225459296|ref|XP_002285790.1| (e_value=3e-128) PREDICTED: probable protein phosphatase 2C 10 [Vitis vinifera];; (*SWP) sp|Q9LME4|P2C09_ARATH (e_value=2e-115) Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1;; (*TAIR) AT1G22280.1 (e_value=2e-116) | Symbols: PAPP2C | phytochrome-associated protein phosphatase type 2C | chr1:7874236-7875496 FORWARD LENGTH=281;; (*ITAG) Solyc04g074190.2.1 (e_value=6e-125) genomic_reference:SL2.40ch04 gene_region:57784113-57790407 transcript_region:SL2.40ch04:57784113..57790407+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C-like (AHRD V1 ***- A2Q6E4_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00004164g0004.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.2|1|1|5|0|102 NbS00052665g0009.1 protein AED:0.08 eAED:0.08 QI:7|0.83|0.85|1|0.5|0.57|7|15|624; (*GB) gi|255550034|ref|XP_002516068.1| (e_value=0.0) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LW83|CE101_ARATH (e_value=4e-155) G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana GN=CES101 PE=2 SV=2;; (*TAIR) AT3G16030.1 (e_value=3e-156) | Symbols: CES101 | lectin protein kinase family protein | chr3:5439609-5442802 FORWARD LENGTH=850;; (*ITAG) Solyc03g120110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62653198-62656724 transcript_region:SL2.40ch03:62653198..62656724+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00052665g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|307; (*GB) gi|225442637|ref|XP_002284619.1| (e_value=6e-143) PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein CACL [Vitis vinifera];; (*SWP) sp|Q08DK7|MCATL_BOVIN (e_value=4e-58) Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1;; (*TAIR) AT1G79900.1 (e_value=2e-139) | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate carrier family protein | chr1:30052524-30053599 REVERSE LENGTH=296;; (*ITAG) Solyc03g120100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62642134-62643662 transcript_region:SL2.40ch03:62642134..62643662- go_terms:GO:0015227 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- D2VIZ2_NAEGR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0015227 NbS00052665g0011.1 protein AED:0.41 eAED:0.44 QI:0|0|0|0.66|0|0|3|0|194; (*GB) gi|224070897|ref|XP_002303286.1| (e_value=7e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q08DK7|MCATL_BOVIN (e_value=2e-22) Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1;; (*TAIR) AT1G79900.1 (e_value=2e-50) | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate carrier family protein | chr1:30052524-30053599 REVERSE LENGTH=296;; (*ITAG) Solyc03g120100.2.1 (e_value=4e-74) genomic_reference:SL2.40ch03 gene_region:62642134-62643662 transcript_region:SL2.40ch03:62642134..62643662- go_terms:GO:0015227 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- D2VIZ2_NAEGR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0015227 NbS00007099g0013.1 protein AED:0.31 eAED:0.31 QI:201|0.5|0.6|1|0.75|0.6|5|0|176; (*GB) gi|370988687|dbj|BAL43557.1| (e_value=1e-68) type-A response regulator [Petunia x hybrida];; (*SWP) sp|O80366|ARR9_ARATH (e_value=1e-40) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=1e-41) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc10g079700.1.1 (e_value=6e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60528398-60530156 transcript_region:SL2.40ch10:60528398..60530156+ go_terms:GO:0006355 functional_description:"Response regulator 6 (AHRD V1 ***- Q9FRY9_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00007099g0010.1 protein AED:0.34 eAED:0.34 QI:247|0.8|0.66|1|0.6|0.66|6|0|206; (*GB) gi|225441256|ref|XP_002274015.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100265940 [Vitis vinifera];; (*TAIR) AT5G04090.2 (e_value=6e-54) | Symbols: | Plant protein 1589 of unknown function | chr5:1105672-1107629 REVERSE LENGTH=305;; (*ITAG) Solyc10g079710.1.1 (e_value=3e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60536606-60540135 transcript_region:SL2.40ch10:60536606..60540135+ functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 ***- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00007099g0012.1 protein AED:0.07 eAED:0.07 QI:124|0.85|0.8|1|0.85|0.86|15|189|1310; (*GB) gi|359481908|ref|XP_003632691.1| (e_value=0.0) PREDICTED: condensin complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q8K2Z4|CND1_MOUSE (e_value=2e-93) Condensin complex subunit 1 OS=Mus musculus GN=Ncapd2 PE=1 SV=2;; (*TAIR) AT3G57060.2 (e_value=0.0) | Symbols: | binding | chr3:21115078-21121051 REVERSE LENGTH=1415;; (*ITAG) Solyc10g079730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60549132-60561529 transcript_region:SL2.40ch10:60549132..60561529- go_terms:GO:0005634,GO:0005488 functional_description:"Condensin complex subunit 1 (AHRD V1 ***- B9H949_POPTR); contains Interpro domain(s) IPR007673 Non-SMC condensin subunit, XCAP-D2/Cnd1 "; GO:0005634,GO:0005488 NbS00007099g0011.1 protein AED:0.14 eAED:0.14 QI:88|1|1|1|0.84|0.85|14|241|456; (*GB) gi|8439539|gb|AAF74980.1|AF082890_1 (e_value=0.0) cystathionine beta-lyase [Solanum tuberosum];; (*SWP) sp|P53780|METC_ARATH (e_value=0.0) Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1;; (*TAIR) AT3G57050.1 (e_value=0.0) | Symbols: CBL | cystathionine beta-lyase | chr3:21111939-21114521 REVERSE LENGTH=464;; (*ITAG) Solyc10g079720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60540899-60547437 transcript_region:SL2.40ch10:60540899..60547437- go_terms:GO:0006520,GO:0071266,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- C1PDC6_BACCO); contains Interpro domain(s) IPR006238 Cystathionine beta-lyase, eukaryotic "; GO:0006520,GO:0071266,GO:0030170 NbS00017049g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|492; (*GB) gi|255538150|ref|XP_002510140.1| (e_value=4e-175) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=1e-144) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G10600.1 (e_value=3e-152) | Symbols: CYP81K2 | cytochrome P450, family 81, subfamily K, polypeptide 2 | chr5:3351227-3352777 FORWARD LENGTH=516;; (*ITAG) Solyc04g078360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60700020-60702401 transcript_region:SL2.40ch04:60700020..60702401+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017049g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|74; (*GB) gi|252972629|dbj|BAH84783.1| (e_value=4e-28) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|O65790|C81F1_ARATH (e_value=2e-14) Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2;; (*TAIR) AT3G28740.1 (e_value=3e-17) | Symbols: CYP81D1 | Cytochrome P450 superfamily protein | chr3:10788764-10790552 REVERSE LENGTH=509;; (*ITAG) Solyc04g078340.2.1 (e_value=7e-26) genomic_reference:SL2.40ch04 gene_region:60696429-60698416 transcript_region:SL2.40ch04:60696429..60698416+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00062250g0004.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|179; (*GB) gi|14164559|gb|AAK55122.1|AF172853_1 (e_value=9e-55) putative S-RNase binding protein p11 precursor [Nicotiana alata];; (*SWP) sp|P60496|BABL_LILLO (e_value=2e-31) Chemocyanin OS=Lilium longiflorum PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=7e-32) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104400.2.1 (e_value=8e-33) genomic_reference:SL2.40ch01 gene_region:84535674-84538317 transcript_region:SL2.40ch01:84535674..84538317- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00010580g0001.1 protein AED:0.18 eAED:0.18 QI:757|0.72|0.83|1|0.63|0.5|12|174|234; (*GB) gi|359494663|ref|XP_002265556.2| (e_value=2e-92) PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Vitis vinifera];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=2e-69) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT1G79380.1 (e_value=3e-83) | Symbols: | Ca(2)-dependent phospholipid-binding protein (Copine) family | chr1:29860812-29863023 FORWARD LENGTH=401;; (*ITAG) Solyc05g053870.2.1 (e_value=8e-112) genomic_reference:SL2.40ch05 gene_region:63050870-63056412 transcript_region:SL2.40ch05:63050870..63056412- go_terms:GO:0008270 functional_description:"Copine I-like protein (AHRD V1 ***- Q6YYC5_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0008270 NbS00010580g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|4|0|427; (*GB) gi|224109096|ref|XP_002315082.1| (e_value=1e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=7e-151) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=5e-152) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc05g053860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63042284-63044388 transcript_region:SL2.40ch05:63042284..63044388+ go_terms:GO:0005351,GO:0015226 functional_description:"Solute carrier family 22 member 5 (Predicted) (AHRD V1 ***- B3RF59_SORAR); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015226 NbS00003452g0002.1 protein AED:0.16 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|324; (*ITAG) Solyc11g007360.1.1 (e_value=3e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1725490-1726254 transcript_region:SL2.40ch11:1725490..1726254+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00005313g0006.1 protein AED:0.04 eAED:0.04 QI:228|0.83|0.85|1|0.5|0.42|7|798|335; (*GB) gi|225470902|ref|XP_002263478.1| (e_value=2e-164) PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 [Vitis vinifera];; (*SWP) sp|Q94EI9|PT314_ARATH (e_value=2e-152) Probable sugar phosphate/phosphate translocator At3g14410 OS=Arabidopsis thaliana GN=At3g14410 PE=2 SV=1;; (*TAIR) AT3G14410.1 (e_value=1e-153) | Symbols: | Nucleotide/sugar transporter family protein | chr3:4815982-4817852 REVERSE LENGTH=340;; (*ITAG) Solyc07g056530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61646873-61651507 transcript_region:SL2.40ch07:61646873..61651507- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00023559g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.66|1|0.5|0.55|9|401|432; (*GB) gi|251821337|emb|CAR92131.1| (e_value=0.0) ABA 8'-hydroxylase cytochrome P450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9LJK2|ABAH4_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4 PE=2 SV=2;; (*TAIR) AT3G19270.1 (e_value=0.0) | Symbols: CYP707A4 | cytochrome P450, family 707, subfamily A, polypeptide 4 | chr3:6673885-6676400 REVERSE LENGTH=468;; (*ITAG) Solyc04g078900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61167800-61171187 transcript_region:SL2.40ch04:61167800..61171187+ go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00023559g0002.1 protein AED:0.32 eAED:0.32 QI:273|1|0.66|1|0.5|0.33|3|0|197; (*GB) gi|225458613|ref|XP_002284743.1| (e_value=1e-58) PREDICTED: thioredoxin-like 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9C5C5|TRL4_ARATH (e_value=2e-51) Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1;; (*TAIR) AT1G07700.1 (e_value=1e-52) | Symbols: | Thioredoxin superfamily protein | chr1:2380214-2381127 FORWARD LENGTH=204;; (*ITAG) Solyc04g078910.2.1 (e_value=5e-101) genomic_reference:SL2.40ch04 gene_region:61172924-61174415 transcript_region:SL2.40ch04:61172924..61174415- go_terms:GO:0045454 functional_description:"Thioredoxin-like 2 (AHRD V1 *-*- B6U3H2_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00056656g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.4|1|1|1|10|0|575; (*GB) gi|55274624|gb|AAV49159.1| (e_value=0.0) plasma membrane proton ATPase 5 [Nicotiana plumbaginifolia];; (*SWP) sp|P19456|PMA2_ARATH (e_value=0.0) ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2;; (*TAIR) AT4G30190.1 (e_value=0.0) | Symbols: AHA2, PMA2, HA2 | H(+)-ATPase 2 | chr4:14770820-14775920 REVERSE LENGTH=948;; (*ITAG) Solyc12g010360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3413621-3421147 transcript_region:SL2.40ch12:3413621..3421147+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00007227g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|110293351|gb|ABG66307.1| (e_value=5e-166) CCR4 associated factor 1-related protein [Capsicum annuum];; (*SWP) sp|Q9FMS6|CAF1K_ARATH (e_value=6e-141) Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1;; (*TAIR) AT5G22250.1 (e_value=4e-142) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:7365605-7366441 REVERSE LENGTH=278;; (*ITAG) Solyc06g074030.1.1 (e_value=9e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42156677-42157471 transcript_region:SL2.40ch06:42156677..42157471- go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00000956g0001.1 protein AED:0.04 eAED:0.04 QI:53|1|1|1|0|0|2|267|88 NbS00006598g0205.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|1125 NbS00056736g0009.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|666|363; (*GB) gi|225348709|gb|ACN87316.1| (e_value=0.0) transparent testa glabra 2 [Nicotiana tabacum];; (*SWP) sp|Q9XGN1|TTG1_ARATH (e_value=0.0) Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana GN=TTG1 PE=1 SV=1;; (*TAIR) AT5G24520.2 (e_value=0.0) | Symbols: TTG1, TTG | Transducin/WD40 repeat-like superfamily protein | chr5:8371708-8372733 REVERSE LENGTH=341;; (*ITAG) Solyc03g097340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53095076-53096104 transcript_region:SL2.40ch03:53095076..53096104+ functional_description:"WD-repeat protein (AHRD V1 **-- C7EAF4_TOBAC); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00030439g0004.1 protein AED:0.14 eAED:0.14 QI:488|1|1|1|1|1|4|356|326; (*GB) gi|4927284|gb|AAD33072.1|AF149251_1 (e_value=0.0) secretory peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9SB81|PER42_ARATH (e_value=0.0) Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2;; (*TAIR) AT4G21960.1 (e_value=0.0) | Symbols: PRXR1 | Peroxidase superfamily protein | chr4:11646613-11648312 REVERSE LENGTH=330;; (*ITAG) Solyc02g080530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39317455-39319147 transcript_region:SL2.40ch02:39317455..39319147- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** C7DYB2_9ERIC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00037544g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.42|0.37|0.62|0.42|0.62|8|0|204; (*GB) gi|296087595|emb|CBI34851.3| (e_value=8e-32) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g093400.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48853856-48862875 transcript_region:SL2.40ch02:48853856..48862875- functional_description:"Integral membrane protein MviN (AHRD V1 ***- D8G376_9CYAN); contains Interpro domain(s) IPR004268 Flagellin assembly, membrane protein MviN "; NbS00037544g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|0.33|0.25|4|175|81; (*GB) gi|225452314|ref|XP_002272751.1| (e_value=2e-30) PREDICTED: ribosomal RNA-processing protein 8 [Vitis vinifera];; (*SWP) sp|Q84JC0|RRP8_ARATH (e_value=3e-26) Ribosomal RNA-processing protein 8 OS=Arabidopsis thaliana GN=At5g40530 PE=2 SV=1;; (*TAIR) AT5G40530.1 (e_value=2e-27) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:16234551-16236100 FORWARD LENGTH=287;; (*ITAG) Solyc02g093390.2.1 (e_value=2e-40) genomic_reference:SL2.40ch02 gene_region:48850317-48853426 transcript_region:SL2.40ch02:48850317..48853426+ go_terms:GO:0008757,GO:0035064 functional_description:"Ribosomal RNA-processing protein (AHRD V1 ***- B6K4Z8_SCHJY); contains Interpro domain(s) IPR007823 Methyltransferase-related "; GO:0008757,GO:0035064 NbS00012830g0117.1 protein AED:0.16 eAED:0.16 QI:0|0.92|0.85|1|0.84|0.85|14|381|602 NbS00012830g0104.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|165 NbS00012830g0103.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|113 NbS00012830g0120.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|0.88|0.12|0.33|9|0|427 NbS00012830g0105.1 protein AED:0.21 eAED:0.21 QI:501|1|1|1|0.87|0.77|9|424|425 NbS00012830g0114.1 protein AED:0.39 eAED:0.68 QI:0|0.5|0.33|1|0.5|0.33|3|0|149 NbS00004785g0005.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|1|0.66|0.75|4|414|273; (*GB) gi|306481011|emb|CBL51953.1| (e_value=9e-62) kip-related protein [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=1e-38) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=7e-40) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc12g098310.1.1 (e_value=2e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64210089-64212339 transcript_region:SL2.40ch12:64210089..64212339+ go_terms:GO:0005634 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 ***- Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0005634 NbS00013334g0009.1 protein AED:0.05 eAED:0.05 QI:325|0.71|0.75|1|0.57|0.62|8|274|699; (*GB) gi|297742094|emb|CBI33881.3| (e_value=3e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FPS7|UBP20_ARATH (e_value=3e-107) Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1;; (*TAIR) AT4G17895.1 (e_value=2e-108) | Symbols: UBP20 | ubiquitin-specific protease 20 | chr4:9939914-9942698 FORWARD LENGTH=695;; (*ITAG) Solyc08g076910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57998077-58002392 transcript_region:SL2.40ch08:57998077..58002392- go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N2M4_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00013334g0008.1 protein AED:0.25 eAED:0.25 QI:231|1|0.87|1|0.85|0.75|8|262|427; (*GB) gi|224138128|ref|XP_002326525.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H100|AGD8_ARATH (e_value=9e-146) Probable ADP-ribosylation factor GTPase-activating protein AGD8 OS=Arabidopsis thaliana GN=AGD8 PE=1 SV=1;; (*TAIR) AT4G17890.1 (e_value=7e-147) | Symbols: AGD8 | ARF-GAP domain 8 | chr4:9937121-9939146 FORWARD LENGTH=413;; (*ITAG) Solyc08g005070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51697-56135 transcript_region:SL2.40ch08:51697..56135+ go_terms:GO:0008060 functional_description:"ADP-ribosylation factor GTPase-activating protein 3 (AHRD V1 **** B6TII3_MAIZE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0008060 NbS00013334g0010.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|28261760|ref|NP_783274.1| (e_value=3e-24) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=9e-26) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-16) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-26) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00042711g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|1|0|0.5|4|0|177; (*GB) gi|356526647|ref|XP_003531928.1| (e_value=7e-86) PREDICTED: uncharacterized protein LOC100812808 [Glycine max];; (*TAIR) AT1G13380.1 (e_value=3e-78) | Symbols: | Protein of unknown function (DUF1218) | chr1:4589218-4590362 REVERSE LENGTH=188;; (*ITAG) Solyc05g009330.2.1 (e_value=2e-106) genomic_reference:SL2.40ch05 gene_region:3477308-3482473 transcript_region:SL2.40ch05:3477308..3482473- functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEX8_SOLPN); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00003749g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|490; (*GB) gi|45735466|dbj|BAD13296.1| (e_value=0.0) putative ATPase [Nicotiana tabacum];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=8e-31) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT5G40010.1 (e_value=3e-170) | Symbols: AATP1 | AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514;; (*ITAG) Solyc05g007470.2.1 (e_value=6e-169) genomic_reference:SL2.40ch05 gene_region:2038021-2039981 transcript_region:SL2.40ch05:2038021..2039981+ go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00003749g0012.1 protein AED:0.22 eAED:0.23 QI:0|0.71|0.5|0.87|0.71|0.5|8|12|446; (*GB) gi|224133828|ref|XP_002321671.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62640.1 (e_value=3e-29) | Symbols: ELF5 | proline-rich family protein | chr5:25149584-25152351 REVERSE LENGTH=520;; (*ITAG) Solyc06g071140.2.1 (e_value=6e-47) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00003749g0015.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|0.66|1|1|3|0|299; (*GB) gi|350606310|ref|NP_001234250.1| (e_value=2e-90) homeobox [Solanum lycopersicum];; (*SWP) sp|Q02283|HAT5_ARATH (e_value=7e-40) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=5e-41) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc03g113270.2.1 (e_value=5e-93) genomic_reference:SL2.40ch03 gene_region:57510884-57513100 transcript_region:SL2.40ch03:57510884..57513100+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0005634,GO:0006355,GO:0045449 NbS00003749g0014.1 protein AED:0.37 eAED:0.37 QI:232|1|0.5|1|1|0.5|2|0|58; (*ITAG) Solyc06g071140.2.1 (e_value=9e-15) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00003749g0013.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|0|0.5|2|0|30; (*ITAG) Solyc06g071140.2.1 (e_value=4e-14) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00049187g0004.1 protein AED:0.20 eAED:0.20 QI:140|1|0.83|1|1|1|6|0|359; (*GB) gi|224090564|ref|XP_002309027.1| (e_value=3e-112) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10572.1 (e_value=1e-81) | Symbols: | 3-phosphoinositide-dependent protein kinase-1, putative | chr3:3304346-3306306 FORWARD LENGTH=333;; (*ITAG) Solyc12g017470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6737184-6744170 transcript_region:SL2.40ch12:6737184..6744170+ functional_description:"3-phosphoinositide-dependent protein kinase-1-like (AHRD V1 ***- Q5Z824_ORYSJ)"; NbS00015002g0005.1 protein AED:0.16 eAED:0.16 QI:215|0.8|0.83|1|1|1|6|256|293; (*GB) gi|351726166|ref|NP_001237885.1| (e_value=5e-118) PHD5 [Glycine max];; (*SWP) sp|Q40359|ALFIN_MEDSA (e_value=3e-107) PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1;; (*TAIR) AT1G14510.1 (e_value=3e-108) | Symbols: AL7 | alfin-like 7 | chr1:4962171-4964154 REVERSE LENGTH=252;; (*ITAG) Solyc01g102760.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:83252023-83258088 transcript_region:SL2.40ch01:83252023..83258088+ functional_description:"PHD finger family protein (AHRD V1 ***- D7KBK9_ARALY)"; NbS00038394g0010.1 protein AED:0.17 eAED:0.17 QI:477|1|1|1|0.5|0.4|5|293|146; (*GB) gi|297742396|emb|CBI34545.3| (e_value=2e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G80245.3 (e_value=2e-26) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr1:30174547-30175217 FORWARD LENGTH=127;; (*ITAG) Solyc01g007180.2.1 (e_value=3e-78) genomic_reference:SL2.40ch01 gene_region:1742088-1746006 transcript_region:SL2.40ch01:1742088..1746006- functional_description:"Unknown Protein (AHRD V1)"; NbS00038394g0011.1 protein AED:0.00 eAED:0.02 QI:60|1|1|1|0.33|0.75|4|380|365; (*GB) gi|225426344|ref|XP_002270160.1| (e_value=3e-166) PREDICTED: putative E3 ubiquitin-protein ligase UBR7 [Vitis vinifera];; (*SWP) sp|Q8BU04|UBR7_MOUSE (e_value=1e-61) Putative E3 ubiquitin-protein ligase UBR7 OS=Mus musculus GN=Ubr7 PE=2 SV=1;; (*TAIR) AT4G23860.3 (e_value=5e-122) | Symbols: | PHD finger protein-related | chr4:12409336-12411336 FORWARD LENGTH=452;; (*ITAG) Solyc08g082320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62316163-62320828 transcript_region:SL2.40ch08:62316163..62320828+ go_terms:GO:0008270 functional_description:"Ubr7 protein (Fragment) (AHRD V1 **-- Q68FN3_MOUSE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00038394g0006.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|0|1|0|130; (*GB) gi|388516507|gb|AFK46315.1| (e_value=3e-38) unknown [Lotus japonicus];; (*TAIR) AT4G23890.1 (e_value=5e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:12420593-12421345 REVERSE LENGTH=250;; (*ITAG) Solyc08g082400.1.1 (e_value=2e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62383099-62383851 transcript_region:SL2.40ch08:62383099..62383851- functional_description:"Genome sequencing data contig C313 (AHRD V1 *-*- A8YHF7_MICAE)"; NbS00000557g0003.1 protein AED:0.23 eAED:0.23 QI:195|1|1|1|1|1|2|609|289; (*GB) gi|37572445|dbj|BAC98492.1| (e_value=6e-164) AG-motif binding protein-2 [Nicotiana tabacum];; (*SWP) sp|Q8LAU9|GATA1_ARATH (e_value=5e-41) GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2;; (*TAIR) AT3G24050.1 (e_value=4e-42) | Symbols: GATA1 | GATA transcription factor 1 | chr3:8686060-8687462 FORWARD LENGTH=274;; (*ITAG) Solyc09g091250.2.1 (e_value=1e-122) genomic_reference:SL2.40ch09 gene_region:65895466-65898011 transcript_region:SL2.40ch09:65895466..65898011+ go_terms:GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00034495g0004.1 protein AED:0.19 eAED:0.23 QI:66|0.75|0.66|1|0.5|0.66|9|692|289; (*GB) gi|296082384|emb|CBI21389.3| (e_value=2e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67170.1 (e_value=1e-60) | Symbols: | SEC-C motif-containing protein / OTU-like cysteine protease family protein | chr5:26799851-26801763 FORWARD LENGTH=375;; (*ITAG) Solyc03g044370.2.1 (e_value=3e-108) genomic_reference:SL2.40ch03 gene_region:12859890-12876072 transcript_region:SL2.40ch03:12859890..12876072- go_terms:GO:0008234 functional_description:"OTU domain containing protein (AHRD V1 *-*- D3B1E5_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00035415g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.45|0.41|1|1|1|12|179|625; (*GB) gi|255569147|ref|XP_002525542.1| (e_value=5e-150) choline/ethanolamine kinase, putative [Ricinus communis];; (*SWP) sp|Q9Y259|CHKB_HUMAN (e_value=4e-52) Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3;; (*TAIR) AT1G74320.1 (e_value=2e-144) | Symbols: | Protein kinase superfamily protein | chr1:27941192-27942903 FORWARD LENGTH=350;; (*ITAG) Solyc04g072020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56687059-56690115 transcript_region:SL2.40ch04:56687059..56690115+ go_terms:GO:0004103 functional_description:"Choline kinase (AHRD V1 **** Q9AVR9_PEA); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004103 NbS00035415g0010.1 protein AED:0.35 eAED:0.36 QI:9|0.77|0.8|0.9|0.55|0.6|10|0|329; (*GB) gi|225470822|ref|XP_002265112.1| (e_value=2e-146) PREDICTED: carboxypeptidase D [Vitis vinifera];; (*SWP) sp|Q9JHW1|CBPD_RAT (e_value=2e-55) Carboxypeptidase D OS=Rattus norvegicus GN=Cpd PE=2 SV=2;; (*TAIR) AT1G71696.1 (e_value=4e-140) | Symbols: SOL1 | carboxypeptidase D, putative | chr1:26967637-26970364 FORWARD LENGTH=422;; (*ITAG) Solyc04g072010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56665497-56679263 transcript_region:SL2.40ch04:56665497..56679263+ go_terms:GO:0004181 functional_description:"Carboxypeptidase D (AHRD V1 ***- Q5SVH8_MOUSE); contains Interpro domain(s) IPR000834 Peptidase M14, carboxypeptidase A "; GO:0004181 NbS00035415g0012.1 protein AED:0.39 eAED:0.42 QI:59|0.75|0.4|1|0.25|0.6|5|0|196; (*GB) gi|297827607|ref|XP_002881686.1| (e_value=9e-91) hypothetical protein ARALYDRAFT_483034 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P58684|SPCS2_ARATH (e_value=5e-92) Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana GN=At2g39960 PE=2 SV=1;; (*TAIR) AT2G39960.1 (e_value=4e-93) | Symbols: | Microsomal signal peptidase 25 kDa subunit (SPC25) | chr2:16681666-16683491 REVERSE LENGTH=192;; (*ITAG) Solyc04g072110.2.1 (e_value=1e-33) genomic_reference:SL2.40ch04 gene_region:56746214-56746721 transcript_region:SL2.40ch04:56746214..56746721- go_terms:GO:0016021 functional_description:"Microsomal signal peptidase subunit(SPC25)-like protein (AHRD V1 ***- Q6Z7E3_ORYSJ); contains Interpro domain(s) IPR009582 Microsomal signal peptidase 25 kDa subunit "; GO:0016021 NbS00001313g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|297736582|emb|CBI25453.3| (e_value=9e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|A0MES8|ABI4_ARATH (e_value=5e-29) Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2;; (*TAIR) AT2G40220.1 (e_value=4e-30) | Symbols: ABI4, SUN6, SIS5, ISI3, GIN6, SAN5, ATABI4 | Integrase-type DNA-binding superfamily protein | chr2:16796599-16797585 REVERSE LENGTH=328;; (*ITAG) Solyc04g080910.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62552994-62553740 transcript_region:SL2.40ch04:62552994..62553740+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00017336g0010.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|480; (*GB) gi|302142507|emb|CBI19710.3| (e_value=8e-124) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEZ4|NFD5_ARATH (e_value=2e-95) Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1;; (*TAIR) AT1G19520.1 (e_value=1e-92) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025210.1.1 (e_value=1e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26689621-26690748 transcript_region:SL2.40ch07:26689621..26690748- functional_description:"Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial (AHRD V1 ***- NFD5_ARATH)"; NbS00017336g0011.1 protein AED:0.23 eAED:0.25 QI:0|0|0|0.66|0.5|1|3|0|279; (*GB) gi|225458257|ref|XP_002281331.1| (e_value=8e-117) PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q940Z1|PPR51_ARATH (e_value=1e-72) Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2;; (*TAIR) AT1G19520.1 (e_value=3e-69) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025230.1.1 (e_value=1e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26819877-26820809 transcript_region:SL2.40ch07:26819877..26820809- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002882g0019.1 protein AED:0.25 eAED:0.25 QI:228|0.72|0.75|1|0.63|0.75|12|543|422; (*GB) gi|255547145|ref|XP_002514630.1| (e_value=0.0) Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis];; (*SWP) sp|Q05048|CSTF1_HUMAN (e_value=1e-61) Cleavage stimulation factor subunit 1 OS=Homo sapiens GN=CSTF1 PE=1 SV=1;; (*TAIR) AT5G60940.1 (e_value=4e-172) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:24523092-24525655 FORWARD LENGTH=429;; (*ITAG) Solyc12g038530.1.1 (e_value=4e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35973528-35980630 transcript_region:SL2.40ch12:35973528..35980630+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B5VVI6_SPIMA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002882g0020.1 protein AED:0.44 eAED:0.48 QI:82|0.85|0.62|1|0.85|1|8|0|211; (*GB) gi|224109588|ref|XP_002315246.1| (e_value=3e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|P82538|PPL1_ARATH (e_value=1e-85) PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1;; (*TAIR) AT3G55330.1 (e_value=9e-87) | Symbols: PPL1 | PsbP-like protein 1 | chr3:20514031-20515275 REVERSE LENGTH=230;; (*ITAG) Solyc03g114930.2.1 (e_value=1e-112) genomic_reference:SL2.40ch03 gene_region:58838128-58843252 transcript_region:SL2.40ch03:58838128..58843252+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- A0ZMM6_NODSP); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00002882g0002.1 protein AED:0.14 eAED:0.14 QI:245|0|0.5|1|0|1|2|0|460; (*GB) gi|255547149|ref|XP_002514632.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|O48927|C78A3_SOYBN (e_value=2e-151) Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1;; (*TAIR) AT1G74110.1 (e_value=0.0) | Symbols: CYP78A10 | cytochrome P450, family 78, subfamily A, polypeptide 10 | chr1:27866667-27868368 REVERSE LENGTH=537;; (*ITAG) Solyc03g114940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58849423-58851764 transcript_region:SL2.40ch03:58849423..58851764- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002882g0011.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|107; (*ITAG) Solyc03g034340.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00002882g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-26) hypothetical protein [Nicotiana tabacum]; NbS00002882g0008.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|163 NbS00013022g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|524|105; (*GB) gi|242059687|ref|XP_002458989.1| (e_value=1e-42) hypothetical protein SORBIDRAFT_03g043870 [Sorghum bicolor];; (*SWP) sp|P55857|SUMO1_ORYSJ (e_value=2e-43) Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=5e-43) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc09g059970.2.1 (e_value=6e-45) genomic_reference:SL2.40ch09 gene_region:52556197-52559727 transcript_region:SL2.40ch09:52556197..52559727+ go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier 2 (AHRD V1 ***- C3KI25_ANOFI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00013022g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|297831372|ref|XP_002883568.1| (e_value=7e-37) hypothetical protein ARALYDRAFT_480010 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G25030.2 (e_value=2e-38) | Symbols: | RING/U-box superfamily protein | chr3:9122650-9123402 FORWARD LENGTH=250;; (*ITAG) Solyc09g059990.1.1 (e_value=6e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:52621572-52622315 transcript_region:SL2.40ch09:52621572..52622315+ go_terms:GO:0005516 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MVE2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005516 NbS00041472g0001.1 protein AED:0.58 eAED:0.72 QI:0|0|0|0.5|1|1|4|0|164; (*ITAG) Solyc02g078890.1.1 (e_value=6e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:38106532-38106726 transcript_region:SL2.40ch02:38106532..38106726+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013191g0001.1 protein AED:0.18 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|254; (*GB) gi|46241272|gb|AAS82859.1| (e_value=3e-70) geranyl diphosphate synthase small subunit [Antirrhinum majus];; (*SWP) sp|Q94ID7|GGPPS_HEVBR (e_value=3e-27) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1;; (*TAIR) AT4G38460.1 (e_value=4e-28) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc07g064660.1.1 (e_value=4e-101) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00013191g0006.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|1|1|2|0|82; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-21) hypothetical protein [Nicotiana tabacum]; NbS00043923g0003.1 protein AED:0.41 eAED:0.41 QI:288|1|1|1|0.2|0.16|6|281|168; (*GB) gi|225469943|ref|XP_002275013.1| (e_value=3e-83) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Vitis vinifera];; (*SWP) sp|Q9FVJ3|AGD12_ARATH (e_value=8e-35) ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1;; (*TAIR) AT5G47710.2 (e_value=7e-79) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:19330470-19331178 FORWARD LENGTH=166;; (*ITAG) Solyc04g015070.2.1 (e_value=4e-102) genomic_reference:SL2.40ch04 gene_region:5263062-5264993 transcript_region:SL2.40ch04:5263062..5264993+ functional_description:"C2 domain containing protein (AHRD V1 **-- Q2A9R2_BRAOL); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00023160g0002.1 protein AED:0.23 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|112 NbS00006208g0006.1 protein AED:0.20 eAED:0.20 QI:202|0.92|0.92|1|0.69|0.78|14|0|577; (*GB) gi|224118112|ref|XP_002331561.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O28972|Y1297_ARCFU (e_value=2e-34) Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1;; (*TAIR) AT4G04180.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:2020471-2023673 FORWARD LENGTH=609;; (*ITAG) Solyc02g036340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21219109-21227995 transcript_region:SL2.40ch02:21219109..21227995- functional_description:"AAA family ATPase (AHRD V1 *-*- Q8F4H4_LEPIN)"; NbS00053093g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|247; (*GB) gi|357452129|ref|XP_003596341.1| (e_value=5e-84) Transcription factor TGA5 [Medicago truncatula];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=5e-13) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT3G14880.2 (e_value=3e-67) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5006565-5007689 FORWARD LENGTH=237;; (*ITAG) Solyc07g062380.1.1 (e_value=1e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62370217-62371096 transcript_region:SL2.40ch07:62370217..62371096+ functional_description:"BZIP transcription factor (AHRD V1 ***- Q8W5R8_ORYSA)"; NbS00007243g0005.1 protein AED:0.05 eAED:0.05 QI:4|1|0.5|1|1|1|2|170|155; (*GB) gi|224069957|ref|XP_002303092.1| (e_value=5e-29) extra response regulator [Populus trichocarpa];; (*SWP) sp|Q9M8Y4|ARR22_ARATH (e_value=3e-28) Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1;; (*TAIR) AT3G04280.3 (e_value=2e-29) | Symbols: ARR22, RR22 | response regulator 22 | chr3:1130138-1130689 REVERSE LENGTH=142;; (*ITAG) Solyc11g071630.1.1 (e_value=2e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52133392-52134005 transcript_region:SL2.40ch11:52133392..52134005- go_terms:GO:0006355 functional_description:"Sensor histidine kinase LuxQ (AHRD V1 ***- D2YSE6_VIBMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00055678g0004.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|621; (*GB) gi|225439838|ref|XP_002274342.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267121 [Vitis vinifera];; (*TAIR) AT3G09520.1 (e_value=0.0) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:572674-574590 transcript_region:SL2.40ch09:572674..574590+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00007380g0012.1 protein AED:0.49 eAED:0.74 QI:0|0|0|1|1|1|3|0|228; (*GB) gi|225449921|ref|XP_002268521.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100256905 [Vitis vinifera];; (*ITAG) Solyc01g068190.2.1 (e_value=5e-39) genomic_reference:SL2.40ch01 gene_region:69680690-69683937 transcript_region:SL2.40ch01:69680690..69683937- functional_description:"Unknown Protein (AHRD V1)"; NbS00007380g0017.1 protein AED:0.84 eAED:0.84 QI:0|0|0.33|0.33|0.5|0.33|3|0|86 NbS00007380g0019.1 protein AED:0.00 eAED:0.00 QI:119|1|1|1|0|0.5|2|454|432; (*GB) gi|224114167|ref|XP_002332417.1| (e_value=5e-58) predicted protein [Populus trichocarpa];; (*TAIR) AT5G03990.1 (e_value=5e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1075957-1077358 FORWARD LENGTH=302;; (*ITAG) Solyc01g068170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69666092-69671384 transcript_region:SL2.40ch01:69666092..69671384+ functional_description:"Oxidoreductase/ transition metal ion binding protein (AHRD V1 *-*- D7LU03_ARALY)"; NbS00007380g0015.1 protein AED:0.01 eAED:0.01 QI:869|1|0.8|1|0.5|0.4|5|0|459; (*GB) gi|224114199|ref|XP_002332425.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13460.1 (e_value=9e-61) | Symbols: IQD11 | IQ-domain 11 | chr5:4316323-4318247 FORWARD LENGTH=443;; (*ITAG) Solyc01g088250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74824669-74827406 transcript_region:SL2.40ch01:74824669..74827406+ go_terms:GO:0005516 functional_description:"IQ-domain 11 (AHRD V1 ***- D7M5A6_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00007380g0014.1 protein AED:0.01 eAED:0.02 QI:67|0.33|0.75|1|0.66|0.5|4|324|783; (*GB) gi|296081308|emb|CBI17752.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SVH3|PP328_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=2 SV=1;; (*TAIR) AT4G20740.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:11126151-11128334 FORWARD LENGTH=727;; (*ITAG) Solyc01g068180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69674349-69678637 transcript_region:SL2.40ch01:69674349..69678637+ go_terms:GO:0016020 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MFI7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016020 NbS00007380g0016.1 protein AED:0.11 eAED:0.11 QI:107|1|1|1|1|1|2|266|303; (*GB) gi|296082651|emb|CBI21656.3| (e_value=8e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=1e-39) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=8e-41) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc01g088240.2.1 (e_value=6e-135) genomic_reference:SL2.40ch01 gene_region:74815324-74820785 transcript_region:SL2.40ch01:74815324..74820785+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M7Q4_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00007380g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|225435999|ref|XP_002273133.1| (e_value=0.0) PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZS34|CHLP_TOBAC (e_value=0.0) Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1;; (*TAIR) AT1G74470.1 (e_value=0.0) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr1:27991248-27992845 FORWARD LENGTH=467;; (*ITAG) Solyc01g088310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74844261-74845854 transcript_region:SL2.40ch01:74844261..74845854+ go_terms:GO:0005515 functional_description:"Geranylgeranyl reductase (AHRD V1 ***- Q09JZ1_BRARP); contains Interpro domain(s) IPR011774 Geranylgeranyl reductase, plants and cyanobacteria "; GO:0005515 NbS00033350g0004.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|0.33|0.5|4|0|86 NbS00004138g0010.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|114; (*GB) gi|350538889|ref|NP_001234108.1| (e_value=6e-53) phospholipase PLDb2 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=8e-47) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=6e-48) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc01g091910.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:77200212-77210933 transcript_region:SL2.40ch01:77200212..77210933- go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00004138g0013.1 protein AED:0.16 eAED:0.18 QI:0|0.77|0.5|1|0.88|0.9|10|0|1037; (*GB) gi|350538889|ref|NP_001234108.1| (e_value=0.0) phospholipase PLDb2 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=0.0) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=0.0) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc01g091910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77200212-77210933 transcript_region:SL2.40ch01:77200212..77210933- go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00004138g0014.1 protein AED:0.25 eAED:0.25 QI:287|0.85|0.75|1|1|1|8|365|366; (*GB) gi|359489402|ref|XP_002272931.2| (e_value=2e-160) PREDICTED: peroxisome biogenesis protein 16-like [Vitis vinifera];; (*SWP) sp|Q8S8S1|PEX16_ARATH (e_value=3e-132) Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1;; (*TAIR) AT2G45690.1 (e_value=2e-133) | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367;; (*ITAG) Solyc01g091900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77191847-77197847 transcript_region:SL2.40ch01:77191847..77197847+ functional_description:"Peroxisomal membrane protein PEX16 (AHRD V1 ***- B0XLA6_CULQU); contains Interpro domain(s) IPR013919 Peroxisome membrane protein, Pex16 "; NbS00004138g0012.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|219; (*GB) gi|54606709|dbj|BAD66732.1| (e_value=5e-14) orf147a [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g304030.1.1 (e_value=1e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00004138g0113.1 protein AED:0.27 eAED:0.32 QI:141|0.93|0.93|1|0.86|0.81|16|482|622 NbS00004138g0112.1 protein AED:0.37 eAED:0.37 QI:152|1|1|1|0.66|1|4|273|99 NbS00004138g0116.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|0.33|3|0|240 NbS00004138g0115.1 protein AED:0.19 eAED:0.19 QI:0|0.88|0.6|1|0.77|0.8|10|0|726 NbS00004138g0114.1 protein AED:0.27 eAED:0.27 QI:0|0.85|0.75|1|1|1|8|324|340 NbS00004703g0005.1 protein AED:0.33 eAED:0.33 QI:182|1|1|1|0.85|0.75|8|304|203; (*GB) gi|311907|emb|CAA51011.1| (e_value=2e-141) ras-related GTP-binding protein [Nicotiana tabacum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=2e-135) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=2e-136) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc05g053940.2.1 (e_value=3e-144) genomic_reference:SL2.40ch05 gene_region:63104823-63109660 transcript_region:SL2.40ch05:63104823..63109660- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00004703g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.85|1|0.66|0.71|7|192|299; (*GB) gi|257215078|emb|CAR64523.1| (e_value=2e-67) nuclear RNA binding protein [Solanum tuberosum];; (*TAIR) AT4G16830.3 (e_value=2e-16) | Symbols: | Hyaluronan / mRNA binding family | chr4:9470652-9472308 FORWARD LENGTH=345;; (*ITAG) Solyc01g090190.2.1 (e_value=7e-66) genomic_reference:SL2.40ch01 gene_region:75571683-75577506 transcript_region:SL2.40ch01:75571683..75577506- functional_description:"Nuclear RNA binding protein (AHRD V1 ***- C7TPG6_SOLTU); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; NbS00024106g0006.1 protein AED:0.21 eAED:0.25 QI:0|0.33|0|1|0.33|0|4|0|390; (*GB) gi|356560001|ref|XP_003548284.1| (e_value=1e-43) PREDICTED: LOW QUALITY PROTEIN: probable serine/threonine-protein kinase WNK4-like [Glycine max];; (*SWP) sp|Q8S8Y8|WNK6_ARATH (e_value=6e-40) Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1;; (*TAIR) AT3G18750.3 (e_value=5e-41) | Symbols: WNK6 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567;; (*ITAG) Solyc10g009350.2.1 (e_value=2e-76) genomic_reference:SL2.40ch10 gene_region:3414014-3418293 transcript_region:SL2.40ch10:3414014..3418293- go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00024106g0005.1 protein AED:0.55 eAED:0.55 QI:0|0.33|0|0.5|1|1|4|0|116; (*GB) gi|225470964|ref|XP_002266888.1| (e_value=1e-40) PREDICTED: probable serine/threonine-protein kinase WNK4-like [Vitis vinifera];; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=6e-40) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT3G18750.2 (e_value=5e-39) | Symbols: WNK6, ZIK5 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=500;; (*ITAG) Solyc01g096170.2.1 (e_value=2e-47) genomic_reference:SL2.40ch01 gene_region:79028423-79033644 transcript_region:SL2.40ch01:79028423..79033644+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00052015g0001.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|1|2|0|254; (*GB) gi|225457355|ref|XP_002281803.1| (e_value=8e-114) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9MA50|PPR13_ARATH (e_value=1e-76) Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1;; (*TAIR) AT1G05750.1 (e_value=8e-78) | Symbols: PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1721523-1723025 FORWARD LENGTH=500;; (*ITAG) Solyc03g115790.1.1 (e_value=3e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59445491-59447149 transcript_region:SL2.40ch03:59445491..59447149- go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00002036g0008.1 protein AED:0.32 eAED:0.33 QI:0|0.2|0.16|0.66|0.4|0.33|6|0|331; (*GB) gi|356507345|ref|XP_003522428.1| (e_value=1e-70) PREDICTED: chaperone protein ClpB4, mitochondrial-like [Glycine max];; (*SWP) sp|Q0E3C8|CLPB3_ORYSJ (e_value=4e-65) Chaperone protein ClpB3, mitochondrial OS=Oryza sativa subsp. japonica GN=CLPB3 PE=2 SV=3;; (*TAIR) AT2G25140.1 (e_value=3e-58) | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic proteinase B4 | chr2:10697877-10701998 REVERSE LENGTH=964;; (*ITAG) Solyc06g011370.2.1 (e_value=2e-96) genomic_reference:SL2.40ch06 gene_region:6755481-6758068 transcript_region:SL2.40ch06:6755481..6758068+ go_terms:GO:0019538 functional_description:"Chaperone protein clpB 2 (AHRD V1 ***- D4TPI3_9NOST); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00002036g0004.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.25|1|1|4|0|89; (*GB) gi|357466045|ref|XP_003603307.1| (e_value=3e-37) Chaperone protein clpB [Medicago truncatula];; (*SWP) sp|Q8VYJ7|CLPB4_ARATH (e_value=4e-37) Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana GN=CLPB4 PE=1 SV=1;; (*TAIR) AT2G25140.1 (e_value=3e-38) | Symbols: HSP98.7, CLPB-M, CLPB4 | casein lytic proteinase B4 | chr2:10697877-10701998 REVERSE LENGTH=964;; (*ITAG) Solyc06g011370.2.1 (e_value=9e-40) genomic_reference:SL2.40ch06 gene_region:6755481-6758068 transcript_region:SL2.40ch06:6755481..6758068+ go_terms:GO:0019538 functional_description:"Chaperone protein clpB 2 (AHRD V1 ***- D4TPI3_9NOST); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00007735g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.62|0.55|0.88|0.75|0.77|9|0|595; (*GB) gi|359473441|ref|XP_002264586.2| (e_value=0.0) PREDICTED: nodulation receptor kinase-like [Vitis vinifera];; (*SWP) sp|Q9SA72|Y1357_ARATH (e_value=4e-54) Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1;; (*TAIR) AT4G02010.1 (e_value=2e-57) | Symbols: | Protein kinase superfamily protein | chr4:881457-885222 FORWARD LENGTH=725;; (*ITAG) Solyc05g005660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:495191-497520 transcript_region:SL2.40ch05:495191..497520+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM37_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007735g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|686; (*GB) gi|359473439|ref|XP_002264637.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 19-like [Vitis vinifera];; (*SWP) sp|Q9XIJ5|PUB18_ARATH (e_value=6e-179) U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1;; (*TAIR) AT1G10560.1 (e_value=5e-180) | Symbols: PUB18, ATPUB18 | plant U-box 18 | chr1:3484613-3486706 FORWARD LENGTH=697;; (*ITAG) Solyc05g005670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:498016-500073 transcript_region:SL2.40ch05:498016..500073- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 *--- D7LSY5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00012601g0006.1 protein AED:0.10 eAED:0.10 QI:549|1|1|1|0.83|0.71|7|347|256; (*GB) gi|164459314|gb|ABY57764.1| (e_value=6e-171) extracellular Ca2+ sensing receptor [Nicotiana tabacum];; (*SWP) sp|Q9FN48|CAS_ARATH (e_value=2e-132) Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT5G23060.1 (e_value=1e-133) | Symbols: CaS | calcium sensing receptor | chr5:7736760-7738412 REVERSE LENGTH=387;; (*ITAG) Solyc03g114450.2.1 (e_value=2e-157) genomic_reference:SL2.40ch03 gene_region:58501298-58504565 transcript_region:SL2.40ch03:58501298..58504565+ functional_description:"Extracellular calcium sensing receptor (AHRD V1 ***- C7BCU7_LIQFO); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00012601g0007.1 protein AED:0.11 eAED:0.11 QI:252|0.92|1|1|1|1|15|15|761; (*GB) gi|225455790|ref|XP_002270918.1| (e_value=0.0) PREDICTED: acetyl-coenzyme A synthetase-like [Vitis vinifera];; (*SWP) sp|F4KBF3|AAE17_ARATH (e_value=0.0) Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1;; (*TAIR) AT5G23050.1 (e_value=0.0) | Symbols: AAE17 | acyl-activating enzyme 17 | chr5:7731513-7735399 REVERSE LENGTH=721;; (*ITAG) Solyc03g114460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58506023-58517475 transcript_region:SL2.40ch03:58506023..58517475+ go_terms:GO:0030729,GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0030729,GO:0003987 NbS00001477g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.4|0.5|0.83|0.2|0.16|6|0|123; (*GB) gi|350536997|ref|NP_001233764.1| (e_value=9e-68) TAGL12 transcription factor [Solanum lycopersicum];; (*SWP) sp|Q0J8G8|MAD26_ORYSJ (e_value=9e-44) MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1;; (*TAIR) AT1G71692.1 (e_value=8e-45) | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952903-26954939 REVERSE LENGTH=211;; (*ITAG) Solyc11g032100.1.1 (e_value=1e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:21504136-21523999 transcript_region:SL2.40ch11:21504136..21523999+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 ***- B2KJ31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00031386g0004.1 protein AED:0.35 eAED:0.35 QI:184|1|1|1|0.75|1|5|511|222; (*GB) gi|224115526|ref|XP_002332156.1| (e_value=3e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|P47192|VA722_ARATH (e_value=1e-121) Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2;; (*TAIR) AT2G33120.1 (e_value=7e-123) | Symbols: SAR1, VAMP722, ATVAMP722 | synaptobrevin-related protein 1 | chr2:14043785-14045337 REVERSE LENGTH=221;; (*ITAG) Solyc02g069150.2.1 (e_value=4e-147) genomic_reference:SL2.40ch02 gene_region:33674501-33679880 transcript_region:SL2.40ch02:33674501..33679880+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00018914g0020.1 protein AED:0.09 eAED:0.09 QI:155|0.75|0.8|1|1|1|5|394|468; (*GB) gi|5777889|emb|CAB53515.1| (e_value=0.0) cysteine protease [Solanum tuberosum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=0.0) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT1G47128.1 (e_value=0.0) | Symbols: RD21, RD21A | Granulin repeat cysteine protease family protein | chr1:17283139-17285609 REVERSE LENGTH=462;; (*ITAG) Solyc04g078540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60836302-60840029 transcript_region:SL2.40ch04:60836302..60840029- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00018914g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.66|1|1|1|6|177|600; (*GB) gi|359494848|ref|XP_002267221.2| (e_value=0.0) PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=1e-31) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT1G62340.1 (e_value=1e-162) | Symbols: ALE1, ALE | PA-domain containing subtilase family protein | chr1:23051123-23055656 REVERSE LENGTH=832;; (*ITAG) Solyc03g078200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43719850-43725264 transcript_region:SL2.40ch03:43719850..43725264- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00018914g0021.1 protein AED:0.26 eAED:0.27 QI:199|1|0.9|1|0.88|1|10|415|535; (*GB) gi|197253299|gb|ACH54085.1| (e_value=0.0) putative chlorophyll b reductase [Nicotiana tabacum];; (*SWP) sp|Q5N800|NYC1_ORYSJ (e_value=0.0) Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1;; (*TAIR) AT4G13250.1 (e_value=0.0) | Symbols: NYC1 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:7684417-7686691 REVERSE LENGTH=496;; (*ITAG) Solyc07g024000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23795954-23800624 transcript_region:SL2.40ch07:23795954..23800624+ go_terms:GO:0034256 functional_description:"Dehydrogenase/ reductase 3 (AHRD V1 *--* Q3INM6_NATPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0034256 NbS00018914g0017.1 protein AED:0.85 eAED:0.91 QI:36|0|0|0.66|0.5|0.66|3|0|168; (*GB) gi|224115886|ref|XP_002317149.1| (e_value=3e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|O64495|SDD1_ARATH (e_value=2e-20) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G62340.1 (e_value=5e-65) | Symbols: ALE1, ALE | PA-domain containing subtilase family protein | chr1:23051123-23055656 REVERSE LENGTH=832;; (*ITAG) Solyc03g078200.1.1 (e_value=8e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43719850-43725264 transcript_region:SL2.40ch03:43719850..43725264- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00018914g0028.1 protein AED:0.10 eAED:0.10 QI:0|0.83|0.85|1|1|1|7|338|634; (*GB) gi|121308607|dbj|BAF43699.1| (e_value=0.0) PERK1-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc12g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1549690-1553261 transcript_region:SL2.40ch12:1549690..1553261+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00002774g0003.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|1|1|3|0|491; (*GB) gi|297738979|emb|CBI28224.3| (e_value=1e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XI36|MBD10_ARATH (e_value=2e-21) Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1;; (*TAIR) AT1G15340.1 (e_value=2e-22) | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384;; (*ITAG) Solyc12g009590.1.1 (e_value=2e-54) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2852172-2859869 transcript_region:SL2.40ch12:2852172..2859869+ go_terms:GO:0005634,GO:0003677,GO:0020037 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677,GO:0020037 NbS00002774g0008.1 protein AED:0.24 eAED:0.30 QI:207|0|0|1|0|0|2|189|55 NbS00036075g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.57|1|1|0.71|7|0|426; (*GB) gi|297745033|emb|CBI38625.3| (e_value=6e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8Z4|HEAT1_ARATH (e_value=3e-56) Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3;; (*TAIR) AT3G06530.2 (e_value=2e-57) | Symbols: | ARM repeat superfamily protein | chr3:2022596-2033637 FORWARD LENGTH=2199;; (*ITAG) Solyc03g093480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48226050-48252855 transcript_region:SL2.40ch03:48226050..48252855- go_terms:GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 10 (AHRD V1 *--- C8VGG5_EMENI); contains Interpro domain(s) IPR012954 BP28, C-terminal "; GO:0005515 NbS00036075g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|1|0.5|2|476|144; (*GB) gi|255539883|ref|XP_002511006.1| (e_value=2e-35) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C8Z4|HEAT1_ARATH (e_value=1e-29) Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3;; (*TAIR) AT3G06530.3 (e_value=8e-31) | Symbols: | ARM repeat superfamily protein | chr3:2022596-2033637 FORWARD LENGTH=2188;; (*ITAG) Solyc03g093480.2.1 (e_value=1e-41) genomic_reference:SL2.40ch03 gene_region:48226050-48252855 transcript_region:SL2.40ch03:48226050..48252855- go_terms:GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 10 (AHRD V1 *--- C8VGG5_EMENI); contains Interpro domain(s) IPR012954 BP28, C-terminal "; GO:0005515 NbS00037130g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|222; (*ITAG) Solyc10g017830.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:6029456-6030697 transcript_region:SL2.40ch10:6029456..6030697+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 24 (AHRD V1 *-*- C5FYA6_NANOT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00056363g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.86|0.81|1|0.73|0.68|16|389|665; (*GB) gi|225448645|ref|XP_002274437.1| (e_value=0.0) PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera];; (*SWP) sp|Q501D5|MCMBP_ARATH (e_value=0.0) Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1;; (*TAIR) AT2G40550.1 (e_value=0.0) | Symbols: ETG1 | E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589;; (*ITAG) Solyc06g050200.1.1 (e_value=6e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:29165221-29167063 transcript_region:SL2.40ch06:29165221..29167063+ functional_description:"UPF0557 protein C10orf119 homolog (AHRD V1 ***- CJ119_BOVIN); contains Interpro domain(s) IPR019140 Protein of unknown function DUF2044, membrane "; NbS00051202g0010.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|103; (*GB) gi|357113631|ref|XP_003558605.1| (e_value=3e-51) PREDICTED: 30S ribosomal protein S17-like [Brachypodium distachyon];; (*SWP) sp|B1I1J7|RS17_DESAP (e_value=4e-27) 30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1;; (*TAIR) AT1G49400.1 (e_value=1e-49) | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116;; (*ITAG) Solyc12g009380.1.1 (e_value=2e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2671827-2673707 transcript_region:SL2.40ch12:2671827..2673707+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 ***- B4FMH4_MAIZE); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00051202g0009.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|406; (*GB) gi|109727320|gb|ABG45945.1| (e_value=0.0) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-98) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00051202g0011.1 protein AED:0.09 eAED:0.09 QI:408|0.88|0.8|1|0.66|0.7|10|426|305; (*GB) gi|255546842|ref|XP_002514479.1| (e_value=4e-37) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q5Z807|C3H46_ORYSJ (e_value=2e-28) Zinc finger CCCH domain-containing protein 46 OS=Oryza sativa subsp. japonica GN=Os06g0704300 PE=2 SV=1;; (*TAIR) AT1G75340.2 (e_value=1e-34) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:28269153-28271873 REVERSE LENGTH=398;; (*ITAG) Solyc12g009390.1.1 (e_value=4e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2674220-2680864 transcript_region:SL2.40ch12:2674220..2680864- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 16 (AHRD V1 *-*- C3H16_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00054745g0008.1 protein AED:0.28 eAED:0.28 QI:160|1|1|1|1|1|4|0|280; (*GB) gi|387600864|gb|AFJ92923.1| (e_value=5e-153) Tau2 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=1e-133) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.3 (e_value=8e-130) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261;; (*ITAG) Solyc11g012710.1.1 (e_value=9e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5480835-5484323 transcript_region:SL2.40ch11:5480835..5484323+ functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 ***- C1BJ92_OSMMO); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; NbS00054745g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.4|0.36|0.81|0.5|0.72|11|0|821; (*GB) gi|297735875|emb|CBI18634.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23482|OPT3_ARATH (e_value=0.0) Oligopeptide transporter 3 OS=Arabidopsis thaliana GN=OPT3 PE=2 SV=3;; (*TAIR) AT4G16370.1 (e_value=0.0) | Symbols: ATOPT3, OPT3 | oligopeptide transporter | chr4:9247514-9250071 REVERSE LENGTH=737;; (*ITAG) Solyc11g012700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5469691-5473409 transcript_region:SL2.40ch11:5469691..5473409+ go_terms:GO:0055085 functional_description:"Oligopeptide transporter 9 (AHRD V1 ***- B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0055085 NbS00006571g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|449; (*GB) gi|359473000|ref|XP_002278677.2| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=1e-52) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT3G25700.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:9358937-9360295 FORWARD LENGTH=452;; (*ITAG) Solyc05g009890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4112338-4113699 transcript_region:SL2.40ch05:4112338..4113699- go_terms:GO:0003677 functional_description:"Chloroplast nucleoid DNA binding protein-like (AHRD V1 **-* Q9LTW4_ARATH); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00006571g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|122 NbS00000550g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|439493|dbj|BAA05079.1| (e_value=9e-83) zinc-finger protein [Petunia x hybrida];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=1e-57) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=1e-58) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc04g077980.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60443326-60444108 transcript_region:SL2.40ch04:60443326..60444108+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00061204g0003.1 protein AED:0.00 eAED:0.00 QI:220|0|0.5|1|1|1|2|32|479; (*GB) gi|225441317|ref|XP_002275980.1| (e_value=0.0) PREDICTED: regulatory protein NPR5 [Vitis vinifera];; (*SWP) sp|Q9ZVC2|NPR5_ARATH (e_value=0.0) Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1;; (*TAIR) AT2G41370.1 (e_value=0.0) | Symbols: BOP2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491;; (*ITAG) Solyc04g040220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31130616-31133135 transcript_region:SL2.40ch04:31130616..31133135- go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00036701g0004.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|177; (*GB) gi|28380096|sp|O49813.1|OLEE1_BETVE (e_value=2e-15) RecName: Full=Olee1-like protein; Flags: Precursor;; (*SWP) sp|O49813|OLEE1_BETPN (e_value=5e-17) Olee1-like protein OS=Betula pendula PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=4e-14) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc02g076860.2.1 (e_value=3e-35) genomic_reference:SL2.40ch02 gene_region:36558814-36560643 transcript_region:SL2.40ch02:36558814..36560643- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00008909g0005.1 protein AED:0.00 eAED:0.00 QI:51|1|1|1|0|0|2|0|26 NbS00008909g0201.1 protein AED:0.19 eAED:0.30 QI:396|0.8|0.66|1|0.4|0.5|6|0|227 NbS00028246g0002.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|0|436; (*GB) gi|225431743|ref|XP_002270026.1| (e_value=7e-57) PREDICTED: uncharacterized protein LOC100244834 [Vitis vinifera];; (*TAIR) AT5G49100.1 (e_value=2e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19897700-19898890 REVERSE LENGTH=396;; (*ITAG) Solyc12g099450.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64942526-64944096 transcript_region:SL2.40ch12:64942526..64944096+ functional_description:"Genomic DNA chromosome 5 TAC clone K20J1 (AHRD V1 *-*- Q9FH24_ARATH)"; NbS00028246g0004.1 protein AED:0.15 eAED:0.15 QI:44|0|0.5|1|0|0|2|0|144; (*GB) gi|255551791|ref|XP_002516941.1| (e_value=9e-29) Phylloplanin precursor, putative [Ricinus communis];; (*SWP) sp|Q56S59|PHYLL_TOBAC (e_value=1e-23) Phylloplanin OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT3G16660.1 (e_value=1e-19) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr3:5676904-5677788 FORWARD LENGTH=180;; (*ITAG) Solyc01g066680.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:67240189-67241345 transcript_region:SL2.40ch01:67240189..67241345- functional_description:"Phylloplanin (AHRD V1 *-*- Q1PCF2_TOBAC)"; NbS00055462g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|112; (*ITAG) Solyc12g096490.1.1 (e_value=2e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63727414-63727908 transcript_region:SL2.40ch12:63727414..63727908- functional_description:"GDU1 (AHRD V1 *-*- B6TY22_MAIZE)"; NbS00061909g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|0.66|0|0.33|3|0|153; (*GB) gi|357517451|ref|XP_003629014.1| (e_value=5e-17) GMC-type oxidoreductase, putative [Medicago truncatula];; (*SWP) sp|O65709|FAO4A_ARATH (e_value=9e-14) Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=2 SV=2;; (*TAIR) AT4G19380.1 (e_value=7e-15) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:10568427-10572288 REVERSE LENGTH=726;; (*ITAG) Solyc08g005630.2.1 (e_value=1e-37) genomic_reference:SL2.40ch08 gene_region:487545-495698 transcript_region:SL2.40ch08:487545..495698- go_terms:GO:0009055,GO:0046577 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00000669g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|255544816|ref|XP_002513469.1| (e_value=1e-97) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q2VZH2|CCME_MAGSA (e_value=2e-26) Cytochrome c-type biogenesis protein CcmE OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ccmE PE=3 SV=1;; (*TAIR) AT3G51790.1 (e_value=3e-91) | Symbols: ATG1, TG1 | transmembrane protein G1P-related 1 | chr3:19209893-19210663 REVERSE LENGTH=256;; (*ITAG) Solyc09g005870.1.1 (e_value=2e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:606450-607295 transcript_region:SL2.40ch09:606450..607295+ go_terms:GO:0005515,GO:0003824 functional_description:"Cytochrome c-type biogenesis protein CcmE (AHRD V1 *-*- C7RMP3_ACCPU); contains Interpro domain(s) IPR004329 CcmE/CycJ protein "; GO:0005515,GO:0003824 NbS00000669g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.28|0.85|0.5|0.85|7|614|148; (*GB) gi|356557603|ref|XP_003547105.1| (e_value=8e-49) PREDICTED: zinc transporter ZTP29-like [Glycine max];; (*SWP) sp|Q940Q3|ZTP29_ARATH (e_value=3e-46) Zinc transporter ZTP29 OS=Arabidopsis thaliana GN=ZTP29 PE=2 SV=1;; (*TAIR) AT3G20870.1 (e_value=2e-47) | Symbols: ZTP29 | ZIP metal ion transporter family | chr3:7309499-7312476 REVERSE LENGTH=276;; (*ITAG) Solyc11g062020.1.1 (e_value=3e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45879662-45889979 transcript_region:SL2.40ch11:45879662..45889979+ go_terms:GO:0016020 functional_description:"Zinc transporter ZupT (AHRD V1 ***- B8L9G2_9GAMM); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00000669g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.93|0.93|1|0.86|0.87|16|254|729; (*GB) gi|18419973|ref|NP_568378.1| (e_value=0.0) outer envelope protein [Arabidopsis thaliana];; (*SWP) sp|Q9C5J8|OEP80_ARATH (e_value=0.0) Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1;; (*TAIR) AT5G19620.1 (e_value=0.0) | Symbols: EMB213, OEP80, ATOEP80, TOC75 | outer envelope protein of 80 kDa | chr5:6623323-6627641 FORWARD LENGTH=732;; (*ITAG) Solyc11g062070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46004281-46018463 transcript_region:SL2.40ch11:46004281..46018463- go_terms:GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- Q31PR1_SYNE7); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00000669g0103.1 protein AED:0.05 eAED:0.05 QI:2162|0.87|0.88|1|0.5|0.33|9|232|360 NbS00011861g0002.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|351; (*GB) gi|224111784|ref|XP_002315977.1| (e_value=9e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25590.1 (e_value=3e-30) | Symbols: | unknown protein; Has 149 Blast hits to 140 proteins in 44 species: Archae - 0; Bacteria - 6; Metazoa - 40; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:9302271-9303542 FORWARD LENGTH=423;; (*ITAG) Solyc04g005920.1.1 (e_value=6e-115) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:603486-604355 transcript_region:SL2.40ch04:603486..604355+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011861g0007.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|1|1|4|0|236; (*GB) gi|2687584|gb|AAB88854.1| (e_value=1e-76) S-adenosylmethionine decarboxylase [Nicotiana tabacum];; (*SWP) sp|O80402|DCAM_NICSY (e_value=3e-78) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1;; (*TAIR) AT3G25570.2 (e_value=1e-51) | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349;; (*ITAG) Solyc05g010420.1.1 (e_value=5e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00011861g0008.1 protein AED:0.15 eAED:0.30 QI:0|0|0|1|0|0|2|0|117; (*GB) gi|359473022|ref|XP_003631232.1| (e_value=1e-25) PREDICTED: RING-H2 finger protein ATL47-like [Vitis vinifera];; (*TAIR) AT5G20885.1 (e_value=1e-11) | Symbols: | RING/U-box superfamily protein | chr5:7084133-7084663 REVERSE LENGTH=176;; (*ITAG) Solyc05g010170.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4359591-4360127 transcript_region:SL2.40ch05:4359591..4360127- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C1HCS6_PARBA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020121g0006.1 protein AED:0.03 eAED:0.03 QI:260|0.9|0.81|1|0.5|0.45|11|409|982; (*GB) gi|359496309|ref|XP_002264751.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Vitis vinifera];; (*SWP) sp|Q84JU6|HOS1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1;; (*TAIR) AT2G39810.1 (e_value=0.0) | Symbols: HOS1 | ubiquitin-protein ligases | chr2:16612941-16617802 FORWARD LENGTH=927;; (*ITAG) Solyc08g078320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59296206-59304933 transcript_region:SL2.40ch08:59296206..59304933+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase HOS1 (AHRD V1 **** HOS1_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00054987g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|1|1|4|0|556; (*GB) gi|150171033|emb|CAN88916.1| (e_value=0.0) glutamyl tRNA Reductase [Nicotiana tabacum];; (*SWP) sp|P93111|HEM11_CUCSA (e_value=0.0) Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1;; (*TAIR) AT1G58290.1 (e_value=0.0) | Symbols: HEMA1 | Glutamyl-tRNA reductase family protein | chr1:21624028-21626051 REVERSE LENGTH=543;; (*ITAG) Solyc04g076870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59389700-59393248 transcript_region:SL2.40ch04:59389700..59393248- go_terms:GO:0004781,GO:0008883 functional_description:"Glutamyl-tRNA reductase (AHRD V1 **** A5BZY3_VITVI); contains Interpro domain(s) IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase "; GO:0004781,GO:0008883 NbS00027170g0001.1 protein AED:0.24 eAED:0.44 QI:0|0|0|1|1|1|3|0|171; (*GB) gi|359492809|ref|XP_003634468.1| (e_value=9e-16) PREDICTED: uncharacterized protein LOC100853421 [Vitis vinifera];; (*ITAG) Solyc11g013500.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6575314-6575865 transcript_region:SL2.40ch11:6575314..6575865- functional_description:"Unknown Protein (AHRD V1)"; NbS00026099g0001.1 protein AED:0.10 eAED:0.10 QI:118|0.5|0.33|1|1|1|3|0|506; (*GB) gi|224068368|ref|XP_002302726.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRX4|PME7_ARATH (e_value=2e-157) Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1;; (*TAIR) AT1G02810.1 (e_value=1e-158) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc09g075330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00026099g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.77|1|1|1|9|0|491; (*GB) gi|587566|emb|CAA56521.1| (e_value=0.0) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|Q42290|MPPB_ARATH (e_value=0.0) Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2;; (*TAIR) AT3G02090.1 (e_value=0.0) | Symbols: MPPBETA | Insulinase (Peptidase family M16) protein | chr3:365624-368526 FORWARD LENGTH=531;; (*ITAG) Solyc05g012480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5715224-5720976 transcript_region:SL2.40ch05:5715224..5720976- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase beta subunit (AHRD V1 ***- Q9AXQ2_CUCME); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00026099g0007.1 protein AED:0.22 eAED:0.23 QI:795|0.66|0.75|1|0|0|4|0|105; (*GB) gi|388504354|gb|AFK40243.1| (e_value=7e-33) unknown [Lotus japonicus];; (*SWP) sp|Q9FZE0|BGL40_ARATH (e_value=8e-31) Beta-glucosidase 40 OS=Arabidopsis thaliana GN=BGLU40 PE=2 SV=1;; (*TAIR) AT1G26560.1 (e_value=6e-32) | Symbols: BGLU40 | beta glucosidase 40 | chr1:9178513-9181726 FORWARD LENGTH=510;; (*ITAG) Solyc01g010390.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:5254174-5260994 transcript_region:SL2.40ch01:5254174..5260994+ go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00035958g0006.1 protein AED:0.13 eAED:0.14 QI:0|0.71|0.62|1|0.85|1|8|0|661; (*GB) gi|359476885|ref|XP_003631905.1| (e_value=1e-177) PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera];; (*SWP) sp|Q8R323|RFC3_MOUSE (e_value=3e-30) Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1;; (*TAIR) AT5G27740.1 (e_value=7e-39) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc02g085060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42656476-42660409 transcript_region:SL2.40ch02:42656476..42660409- functional_description:"Replication factor C subunit 5 (AHRD V1 *-*- B6T5I0_MAIZE)"; NbS00035958g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|297823195|ref|XP_002879480.1| (e_value=2e-53) nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-54) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT1G29250.1 (e_value=5e-56) | Symbols: | Alba DNA/RNA-binding protein | chr1:10223461-10224592 REVERSE LENGTH=130;; (*ITAG) Solyc06g068050.2.1 (e_value=3e-50) genomic_reference:SL2.40ch06 gene_region:38559930-38563271 transcript_region:SL2.40ch06:38559930..38563271+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00029185g0003.1 protein AED:0.37 eAED:0.38 QI:0|1|0.6|1|1|1|5|0|463; (*GB) gi|225445238|ref|XP_002280972.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249177 [Vitis vinifera];; (*TAIR) AT5G19540.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6595748-6597724 FORWARD LENGTH=462;; (*ITAG) Solyc12g007090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1532751-1536367 transcript_region:SL2.40ch12:1532751..1536367- functional_description:"Os08g0387500 protein (Fragment) (AHRD V1 ***- Q0J5Y7_ORYSJ)"; NbS00002268g0005.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|153793260|gb|ABS50432.1| (e_value=5e-172) chilling-responsive protein [Nicotiana tabacum];; (*SWP) sp|P46518|LEA14_GOSHI (e_value=5e-14) Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1;; (*TAIR) AT2G44060.2 (e_value=3e-139) | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325;; (*ITAG) Solyc08g015690.2.1 (e_value=9e-166) genomic_reference:SL2.40ch08 gene_region:5133715-5137445 transcript_region:SL2.40ch08:5133715..5137445- go_terms:GO:0009269 functional_description:"Late-embryogenesis abundant protein 2 (AHRD V1 **-- C6T750_SOYBN); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00002268g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|3|431|587; (*GB) gi|225434251|ref|XP_002276208.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257808 [Vitis vinifera];; (*TAIR) AT2G31890.1 (e_value=2e-147) | Symbols: ATRAP, RAP | RAP | chr2:13557100-13559715 REVERSE LENGTH=671;; (*ITAG) Solyc12g017510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6776593-6780152 transcript_region:SL2.40ch12:6776593..6780152+ functional_description:"Os03g0425000 protein (Fragment) (AHRD V1 ***- Q0DR24_ORYSJ); contains Interpro domain(s) IPR013584 RAP domain "; NbS00002268g0019.1 protein AED:0.31 eAED:0.31 QI:159|0.83|0.84|1|1|1|13|0|449; (*GB) gi|82623395|gb|ABB87112.1| (e_value=0.0) GDP dissociation inhibitor 1-like [Solanum tuberosum];; (*SWP) sp|P50395|GDIB_HUMAN (e_value=1e-178) Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2;; (*TAIR) AT2G44100.1 (e_value=0.0) | Symbols: ATGDI1, AT-GDI1, GDI1 | guanosine nucleotide diphosphate dissociation inhibitor 1 | chr2:18241804-18244864 FORWARD LENGTH=445;; (*ITAG) Solyc12g017570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6863578-6870564 transcript_region:SL2.40ch12:6863578..6870564+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab GDP dissociation inhibitor (AHRD V1 **** C0LSK7_NICBE); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00002268g0012.1 protein AED:0.16 eAED:0.67 QI:0|0|0|1|1|1|2|0|83 NbS00002268g0020.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.2|1|1|1|5|0|603; (*GB) gi|62867584|emb|CAI84657.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9M1Y3|SKI35_ARATH (e_value=0.0) F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1;; (*TAIR) AT3G59910.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:22130779-22133033 REVERSE LENGTH=611;; (*ITAG) Solyc12g017540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6803967-6811123 transcript_region:SL2.40ch12:6803967..6811123- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00007328g0014.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|77; (*ITAG) Solyc05g012170.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5362557-5362937 transcript_region:SL2.40ch05:5362557..5362937+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007328g0003.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|1|1|3|0|168; (*GB) gi|57013896|ref|YP_173370.1| (e_value=4e-29) hypothetical protein NitaMp023 [Nicotiana tabacum];; (*ITAG) Solyc05g007720.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2202752-2203647 transcript_region:SL2.40ch05:2202752..2203647+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007328g0021.1 protein AED:0.52 eAED:0.55 QI:0|0|0|0.66|0.6|0.66|6|0|230; (*GB) gi|224101453|ref|XP_002312287.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPR0|COQ4_ARATH (e_value=2e-62) Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1;; (*TAIR) AT2G03690.1 (e_value=2e-63) | Symbols: | coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein | chr2:1122122-1123011 REVERSE LENGTH=226;; (*ITAG) Solyc05g012150.2.1 (e_value=4e-69) genomic_reference:SL2.40ch05 gene_region:5352891-5356312 transcript_region:SL2.40ch05:5352891..5356312+ go_terms:GO:0006744 functional_description:"Ubiquinone biosynthesis protein COQ4, mitochondrial (AHRD V1 ***- COQ4_COPC7); contains Interpro domain(s) IPR007715 Coenzyme Q biosynthesis Coq4 "; GO:0006744 NbS00007328g0017.1 protein AED:0.08 eAED:0.08 QI:162|1|1|1|0|0|2|21|125; (*GB) gi|57013908|ref|YP_173381.1| (e_value=6e-69) hypothetical protein NitaMp035 [Nicotiana tabacum]; NbS00007328g0018.1 protein AED:0.27 eAED:0.27 QI:172|1|1|1|0.5|0.33|3|242|112; (*GB) gi|255542002|ref|XP_002512065.1| (e_value=3e-35) SP1L, putative [Ricinus communis];; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=3e-29) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=2e-30) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc05g012160.2.1 (e_value=1e-49) genomic_reference:SL2.40ch05 gene_region:5356573-5358187 transcript_region:SL2.40ch05:5356573..5358187- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00005987g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|89 NbS00005987g0008.1 protein AED:0.30 eAED:0.33 QI:0|0|0|0.8|0|0|5|0|175; (*ITAG) Solyc05g010360.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018017g0006.1 protein AED:0.10 eAED:0.10 QI:868|1|0.71|1|0.83|0.57|7|0|518; (*GB) gi|296084520|emb|CBI25541.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VZJ9|Y4330_ARATH (e_value=1e-115) Probable leucine-rich repeat receptor-like protein kinase At4g00330 OS=Arabidopsis thaliana GN=At4g00330 PE=2 SV=1;; (*TAIR) AT2G11520.1 (e_value=0.0) | Symbols: CRCK3 | calmodulin-binding receptor-like cytoplasmic kinase 3 | chr2:4619145-4621448 FORWARD LENGTH=510;; (*ITAG) Solyc07g007780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2416863-2426049 transcript_region:SL2.40ch07:2416863..2426049- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM39_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00046201g0006.1 protein AED:0.34 eAED:0.34 QI:0|0.76|0.64|0.85|0.76|0.78|14|271|549; (*GB) gi|296082223|emb|CBI21228.3| (e_value=3e-127) unnamed protein product [Vitis vinifera];; (*SWP) sp|O60506|HNRPQ_HUMAN (e_value=2e-16) Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2;; (*TAIR) AT4G00830.2 (e_value=4e-16) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495;; (*ITAG) Solyc02g088720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45279650-45290880 transcript_region:SL2.40ch02:45279650..45290880+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein R (Fragment) (AHRD V1 *--- Q28BX1_XENTR); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00046201g0002.1 protein AED:0.35 eAED:0.35 QI:142|0|0.5|1|0|0.5|2|0|250; (*GB) gi|78191450|gb|ABB29946.1| (e_value=1e-174) F-box family protein-like [Solanum tuberosum];; (*SWP) sp|Q9FL82|FB270_ARATH (e_value=1e-119) F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1;; (*TAIR) AT5G39250.1 (e_value=1e-120) | Symbols: | F-box family protein | chr5:15724860-15725618 FORWARD LENGTH=252;; (*ITAG) Solyc02g088730.1.1 (e_value=3e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45291619-45292371 transcript_region:SL2.40ch02:45291619..45292371- functional_description:"F-box family protein-like (AHRD V1 ***- Q307Y5_SOLTU); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019002g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|313586575|gb|ADR71298.1| (e_value=1e-14) hypothetical protein 21 [Hevea brasiliensis];; (*ITAG) Solyc08g041860.1.1 (e_value=2e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:27461999-27462499 transcript_region:SL2.40ch08:27461999..27462499- functional_description:"Unknown Protein (AHRD V1)"; NbS00019002g0007.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|283; (*GB) gi|225454383|ref|XP_002279147.1| (e_value=5e-142) PREDICTED: acidic endochitinase [Vitis vinifera];; (*SWP) sp|P29060|CHIA_TOBAC (e_value=1e-117) Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT5G24090.1 (e_value=2e-111) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc01g095250.1.1 (e_value=6e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78348443-78349339 transcript_region:SL2.40ch01:78348443..78349339+ go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 ***- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00051224g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|359472848|ref|XP_003631202.1| (e_value=5e-33) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Vitis vinifera];; (*TAIR) AT1G70810.1 (e_value=6e-31) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:26704207-26705091 FORWARD LENGTH=165;; (*ITAG) Solyc06g053390.2.1 (e_value=2e-53) genomic_reference:SL2.40ch06 gene_region:32647940-32649497 transcript_region:SL2.40ch06:32647940..32649497+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7LLS3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00024187g0008.1 protein AED:0.03 eAED:0.04 QI:0|1|1|1|1|1|2|322|639; (*GB) gi|350537733|ref|NP_001234563.1| (e_value=0.0) dem protein [Solanum lycopersicum];; (*SWP) sp|P40781|CYPR4_CYNCA (e_value=0.0) Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1;; (*TAIR) AT4G33400.1 (e_value=0.0) | Symbols: | Vacuolar import/degradation, Vid27-related protein | chr4:16078189-16080410 REVERSE LENGTH=645;; (*ITAG) Solyc04g078940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61183300-61186630 transcript_region:SL2.40ch04:61183300..61186630+ functional_description:"Vacuolar import and degradation protein VID27 (AHRD V1 *--- B3LP56_YEAS1); contains Interpro domain(s) IPR013863 Vacuolar import and degradation, Vid27-related "; NbS00024187g0009.1 protein AED:0.13 eAED:0.14 QI:47|0.2|0|1|0.4|0.16|6|0|968; (*GB) gi|255538314|ref|XP_002510222.1| (e_value=0.0) Paramyosin, putative [Ricinus communis];; (*SWP) sp|O48724|WEB1_ARATH (e_value=1e-177) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=8e-179) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc07g022910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23226837-23229990 transcript_region:SL2.40ch07:23226837..23229990- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbC24997071g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|146; (*GB) gi|303305632|gb|ADM13586.1| (e_value=1e-44) S-domain receptor-like kinase [Nicotiana tabacum];; (*SWP) sp|Q9SXB4|Y1130_ARATH (e_value=1e-42) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1;; (*TAIR) AT1G11300.1 (e_value=9e-44) | Symbols: | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding | chr1:3794389-3800719 FORWARD LENGTH=1650;; (*ITAG) Solyc04g008400.1.1 (e_value=2e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2022021-2028400 transcript_region:SL2.40ch04:2022021..2028400- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00048421g0009.1 protein AED:0.03 eAED:0.09 QI:0|0|0|1|0|0.33|3|0|356; (*GB) gi|224092745|ref|XP_002334872.1| (e_value=2e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=3e-38) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=3e-39) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc10g047810.1.1 (e_value=1e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38225764-38227872 transcript_region:SL2.40ch10:38225764..38227872- go_terms:GO:0005529,GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468,GO:0005488 NbS00048421g0006.1 protein AED:0.14 eAED:0.14 QI:63|1|0.6|1|1|0.8|5|240|475; (*GB) gi|359494712|ref|XP_003634825.1| (e_value=1e-50) PREDICTED: uncharacterized protein LOC100853636 [Vitis vinifera];; (*SWP) sp|Q9S7V4|HA22A_ARATH (e_value=6e-20) HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1;; (*TAIR) AT1G74520.1 (e_value=5e-21) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177;; (*ITAG) Solyc10g047670.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:37073000-37077377 transcript_region:SL2.40ch10:37073000..37077377+ go_terms:GO:0008270,GO:0005622 functional_description:"Receptor expression-enhancing protein 2 (AHRD V1 *--- B2WDX2_PYRTR); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0008270,GO:0005622 NbS00048421g0010.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|613; (*GB) gi|225470605|ref|XP_002262748.1| (e_value=0.0) PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Vitis vinifera];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=4e-112) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=3e-113) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc10g047810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38225764-38227872 transcript_region:SL2.40ch10:38225764..38227872- go_terms:GO:0005529,GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468,GO:0005488 NbS00017906g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.8|0.63|0.90|1|1|11|84|274; (*GB) gi|296087616|emb|CBI34872.3| (e_value=4e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6GPU3|DTLB_XENLA (e_value=3e-38) Denticleless protein homolog B OS=Xenopus laevis GN=dtl-b PE=2 SV=1;; (*TAIR) AT3G27640.1 (e_value=1e-100) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535;; (*ITAG) Solyc02g086470.2.1 (e_value=7e-132) genomic_reference:SL2.40ch02 gene_region:43724456-43729361 transcript_region:SL2.40ch02:43724456..43729361+ go_terms:GO:0030674,GO:0032403 functional_description:"WD repeat protein (AHRD V1 **-- B8MBM8_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030674,GO:0032403 NbS00017906g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|193527440|gb|ACF19785.1| (e_value=6e-124) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc03g114260.1.1 (e_value=4e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00017906g0009.1 protein AED:0.56 eAED:0.56 QI:72|0|0.5|0.5|0|0.5|2|33|22 NbS00017906g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.66|1|0.5|0.33|3|0|141; (*GB) gi|156915045|gb|ABU97107.1| (e_value=2e-89) MYB305 protein v1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P81396|MYB40_ANTMA (e_value=6e-65) Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1;; (*TAIR) AT5G40350.1 (e_value=4e-53) | Symbols: MYB24, AtMYB24 | myb domain protein 24 | chr5:16138703-16140946 REVERSE LENGTH=214;; (*ITAG) Solyc02g067760.2.1 (e_value=2e-78) genomic_reference:SL2.40ch02 gene_region:32454233-32457848 transcript_region:SL2.40ch02:32454233..32457848- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B8YIB6_MIRJA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00032591g0119.1 protein AED:0.13 eAED:0.13 QI:0|0.87|0.66|0.88|1|1|9|0|991 NbS00032591g0118.1 protein AED:0.10 eAED:0.13 QI:201|0.66|0.6|0.9|0.55|0.5|10|90|546 NbS00032591g0116.1 protein AED:0.21 eAED:0.21 QI:284|0.83|0.85|1|0.83|1|7|366|556 NbS00032591g0125.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|0.33|0.5|4|0|173 NbS00032591g0130.1 protein AED:0.03 eAED:0.03 QI:0|1|0.71|1|0.83|1|7|0|454 NbS00032591g0121.1 protein AED:0.06 eAED:0.08 QI:0|1|0.66|1|0.5|0.66|3|157|317 NbS00032591g0120.1 protein AED:0.15 eAED:0.19 QI:0|0.5|0.2|1|0.75|0.8|5|0|414 NbS00032591g0124.1 protein AED:0.41 eAED:0.72 QI:0|0|0|1|0|0|2|0|91 NbS00058639g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0.83|1|1|1|6|0|651; (*GB) gi|350535242|ref|NP_001234184.1| (e_value=0.0) auxin efflux facilitator SlPIN4 [Solanum lycopersicum];; (*SWP) sp|Q9S7Z8|PIN3_ARATH (e_value=0.0) Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1;; (*TAIR) AT1G70940.1 (e_value=0.0) | Symbols: PIN3, ATPIN3 | Auxin efflux carrier family protein | chr1:26743170-26745871 FORWARD LENGTH=640;; (*ITAG) Solyc05g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2482150-2485589 transcript_region:SL2.40ch05:2482150..2485589+ go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier (AHRD V1 **** D6RT10_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00013299g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|359484547|ref|XP_003633119.1| (e_value=3e-21) PREDICTED: E3 ubiquitin-protein ligase RNF115-like [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=5e-15) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=4e-16) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc05g018050.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:19888324-19888605 transcript_region:SL2.40ch05:19888324..19888605+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024686g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.57|0.62|1|0.71|0.75|8|383|251; (*GB) gi|298359665|gb|ADI77438.1| (e_value=4e-130) Why2 protein [Solanum tuberosum];; (*TAIR) AT1G71260.1 (e_value=1e-72) | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861849-26863391 REVERSE LENGTH=238;; (*ITAG) Solyc11g044750.1.1 (e_value=5e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36051926-36054835 transcript_region:SL2.40ch11:36051926..36054835- go_terms:GO:0006355 functional_description:"DNA-binding protein p24 (AHRD V1 **-- Q9LL85_SOLTU); contains Interpro domain(s) IPR013742 Plant transcription factor "; GO:0006355 NbS00042989g0004.1 protein AED:0.15 eAED:0.15 QI:181|0.90|0.96|0.96|0.83|0.87|32|361|1102; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=0.0) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.2 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1115;; (*ITAG) Solyc05g055090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00010274g0006.1 protein AED:0.27 eAED:0.27 QI:428|1|1|1|0.5|0.4|5|190|183; (*GB) gi|225456311|ref|XP_002283737.1| (e_value=4e-68) PREDICTED: COMM domain-containing protein 9 [Vitis vinifera]; NbS00010635g0002.1 protein AED:0.08 eAED:0.08 QI:210|0.81|0.66|1|1|1|12|160|793; (*GB) gi|115315698|gb|ABI93948.1| (e_value=0.0) methylputrescine oxidase [Nicotiana tabacum];; (*SWP) sp|Q07123|AMO2_ARTS1 (e_value=3e-152) Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc08g014330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4055000-4062570 transcript_region:SL2.40ch08:4055000..4062570+ go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00025428g0015.1 protein AED:0.09 eAED:0.09 QI:335|0.93|0.93|1|1|1|16|149|652; (*GB) gi|359492972|ref|XP_002285626.2| (e_value=0.0) PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=4e-34) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09910.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc04g076660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59143668-59150542 transcript_region:SL2.40ch04:59143668..59150542- go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00025428g0022.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|0.66|0.5|4|614|333; (*GB) gi|255574005|ref|XP_002527920.1| (e_value=1e-161) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94C27|FB84_ARATH (e_value=2e-135) F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1;; (*TAIR) AT1G70590.1 (e_value=1e-136) | Symbols: | F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351;; (*ITAG) Solyc01g007930.2.1 (e_value=3e-176) genomic_reference:SL2.40ch01 gene_region:2117825-2120595 transcript_region:SL2.40ch01:2117825..2120595- go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *-*- A5GBQ0_GEOUR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00025428g0021.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.71|1|0.33|0.42|7|0|460; (*GB) gi|224127997|ref|XP_002329229.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-108) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G38030.1 (e_value=9e-180) | Symbols: | MATE efflux family protein | chr5:15171486-15175302 REVERSE LENGTH=498;; (*ITAG) Solyc05g013470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6680451-6685550 transcript_region:SL2.40ch05:6680451..6685550+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00025428g0018.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.61|1|0.66|0.61|13|0|433; (*GB) gi|15223186|ref|NP_177215.1| (e_value=0.0) alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana];; (*SWP) sp|Q9S7E9|GGT2_ARATH (e_value=0.0) Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1;; (*TAIR) AT1G70580.4 (e_value=0.0) | Symbols: AOAT2, GGT2 | alanine-2-oxoglutarate aminotransferase 2 | chr1:26613222-26615845 FORWARD LENGTH=481;; (*ITAG) Solyc01g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2123045-2128114 transcript_region:SL2.40ch01:2123045..2128114- go_terms:GO:0004021 functional_description:"Alanine aminotransferase 2 (AHRD V1 **** A8IKE5_SOYBN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004021 NbS00025428g0019.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|434; (*GB) gi|225470595|ref|XP_002272663.1| (e_value=4e-84) PREDICTED: peroxidase 5 [Vitis vinifera];; (*SWP) sp|Q93V93|PER44_ARATH (e_value=1e-71) Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1;; (*TAIR) AT4G26010.1 (e_value=7e-73) | Symbols: | Peroxidase superfamily protein | chr4:13200653-13201688 FORWARD LENGTH=310;; (*ITAG) Solyc01g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2134714-2143061 transcript_region:SL2.40ch01:2134714..2143061- go_terms:GO:0055114 functional_description:"Peroxidase 1 (AHRD V1 *-*- B6T173_MAIZE); contains Interpro domain(s) IPR000823 Plant peroxidase "; GO:0055114 NbS00006703g0003.1 protein AED:0.13 eAED:0.14 QI:0|0.33|0|1|0|0|4|0|259; (*GB) gi|356566333|ref|XP_003551387.1| (e_value=6e-85) PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Glycine max];; (*SWP) sp|Q9LJR7|XTH3_ARATH (e_value=2e-73) Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1;; (*TAIR) AT3G25050.1 (e_value=2e-74) | Symbols: XTH3 | xyloglucan endotransglucosylase/hydrolase 3 | chr3:9126872-9128218 FORWARD LENGTH=290;; (*ITAG) Solyc11g017450.1.1 (e_value=6e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8400274-8401408 transcript_region:SL2.40ch11:8400274..8401408- go_terms:GO:0005975 functional_description:"Xyloglucan endotransglucosylase/hydrolase (AHRD V1 ***- D7URZ1_DIACA); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16 "; GO:0005975 NbS00012209g0105.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|375 NbS00012209g0206.1 protein AED:0.06 eAED:0.06 QI:129|1|1|1|0.75|0.8|5|402|326 NbS00010044g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|0.75|4|0|233; (*GB) gi|224121586|ref|XP_002330737.1| (e_value=1e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7M1|B3GTE_ARATH (e_value=2e-101) Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1;; (*TAIR) AT1G53290.1 (e_value=2e-102) | Symbols: | Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345;; (*ITAG) Solyc07g062590.2.1 (e_value=2e-135) genomic_reference:SL2.40ch07 gene_region:62505718-62512422 transcript_region:SL2.40ch07:62505718..62512422- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00010044g0014.1 protein AED:0.10 eAED:0.13 QI:0|0.77|0.7|1|0.66|0.7|10|0|1220; (*GB) gi|224121588|ref|XP_002330738.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=1e-11) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1;; (*TAIR) AT3G14980.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr3:5039931-5044811 REVERSE LENGTH=1189;; (*ITAG) Solyc07g062600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62512447-62519706 transcript_region:SL2.40ch07:62512447..62519706- go_terms:GO:0023034,GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0023034,GO:0008270 NbS00020040g0013.1 protein AED:0.15 eAED:0.15 QI:1874|1|1|1|0.83|0.71|7|292|185; (*GB) gi|359491601|ref|XP_002280126.2| (e_value=2e-105) PREDICTED: ubiquitin-conjugating enzyme E2 5-like isoform 1 [Vitis vinifera];; (*SWP) sp|P16577|UBC4_WHEAT (e_value=1e-93) Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1;; (*TAIR) AT5G41340.1 (e_value=2e-93) | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enzyme 4 | chr5:16538296-16539956 REVERSE LENGTH=187;; (*ITAG) Solyc11g071870.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52295316-52297648 transcript_region:SL2.40ch11:52295316..52297648+ go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0016567,GO:0043687 NbS00020040g0009.1 protein AED:0.33 eAED:0.33 QI:193|1|1|1|1|1|2|548|81; (*GB) gi|359488720|ref|XP_003633805.1| (e_value=1e-34) PREDICTED: RING-H2 finger protein ATL48-like [Vitis vinifera];; (*SWP) sp|Q7X843|ATL48_ARATH (e_value=2e-30) RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2 SV=2;; (*TAIR) AT3G48030.1 (e_value=1e-31) | Symbols: | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727954 REVERSE LENGTH=349; NbS00020040g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.81|0.75|0.91|0.81|0.75|12|449|376; (*GB) gi|225436624|ref|XP_002280005.1| (e_value=0.0) PREDICTED: minor histocompatibility antigen H13 [Vitis vinifera];; (*SWP) sp|Q8TCT9|HM13_HUMAN (e_value=1e-69) Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1;; (*TAIR) AT2G03120.1 (e_value=0.0) | Symbols: ATSPP, SPP | signal peptide peptidase | chr2:937554-940083 FORWARD LENGTH=344;; (*ITAG) Solyc11g064790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47037280-47042310 transcript_region:SL2.40ch11:47037280..47042310- go_terms:GO:0016021 functional_description:"Signal peptide peptidase family protein (AHRD V1 ***- D7LQE4_ARALY); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00010574g0001.1 protein AED:0.15 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|225423895|ref|XP_002281709.1| (e_value=4e-122) PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Vitis vinifera];; (*SWP) sp|Q9ZWM9|RAV1_ARATH (e_value=3e-108) AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1;; (*TAIR) AT1G13260.1 (e_value=3e-109) | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542386-4543420 FORWARD LENGTH=344;; (*ITAG) Solyc05g009790.1.1 (e_value=2e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3987084-3988271 transcript_region:SL2.40ch05:3987084..3988271- go_terms:GO:0003677,GO:0016564 functional_description:"Transcription factor (AHRD V1 *-** D6MKM9_9ASPA); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00010574g0002.1 protein AED:0.17 eAED:0.17 QI:378|0.5|0.2|1|1|1|5|0|320; (*GB) gi|225423907|ref|XP_002281818.1| (e_value=1e-124) PREDICTED: BRO1 domain-containing protein BROX [Vitis vinifera];; (*TAIR) AT1G13310.1 (e_value=2e-59) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:4561217-4562929 REVERSE LENGTH=374;; (*ITAG) Solyc04g007020.2.1 (e_value=1e-178) genomic_reference:SL2.40ch04 gene_region:738731-742225 transcript_region:SL2.40ch04:738731..742225- functional_description:"BRO1 domain-containing protein BROX (AHRD V1 **-- B5X0Z6_SALSA); contains Interpro domain(s) IPR004328 BRO1 "; NbS00004799g0013.1 protein AED:0.23 eAED:0.24 QI:0|1|0|1|1|1|2|0|129; (*GB) gi|224139046|ref|XP_002326754.1| (e_value=7e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31940.1 (e_value=3e-36) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=3e-58) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00004799g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|225466198|ref|XP_002265458.1| (e_value=1e-135) PREDICTED: diphthamide biosynthesis protein 1-like [Vitis vinifera];; (*SWP) sp|Q5AZJ7|DPH1_EMENI (e_value=1e-71) Diphthamide biosynthesis protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph1 PE=3 SV=2;; (*TAIR) AT5G62030.1 (e_value=6e-130) | Symbols: | diphthamide synthesis DPH2 family protein | chr5:24919046-24920407 FORWARD LENGTH=453;; (*ITAG) Solyc06g066300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37979102-37980553 transcript_region:SL2.40ch06:37979102..37980553- go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 1 (AHRD V1 ***- B6TW72_MAIZE); contains Interpro domain(s) IPR016435 Diphthamide synthesis, DHP1 "; GO:0005515 NbS00004799g0015.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.7|0.9|1|1|10|0|494; (*GB) gi|147865531|emb|CAN83660.1| (e_value=3e-153) hypothetical protein VITISV_006539 [Vitis vinifera];; (*SWP) sp|Q96ST2|IWS1_HUMAN (e_value=2e-22) Protein IWS1 homolog OS=Homo sapiens GN=IWS1 PE=1 SV=2;; (*TAIR) AT1G32130.1 (e_value=6e-125) | Symbols: IWS1, ATIWS1 | Transcription elongation factor (TFIIS) family protein | chr1:11559146-11561786 REVERSE LENGTH=502;; (*ITAG) Solyc06g066320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37991616-37996445 transcript_region:SL2.40ch06:37991616..37996445- go_terms:GO:0005634 functional_description:"Transcription factor iws1 (AHRD V1 *-*- B6K1U8_SCHJY); contains Interpro domain(s) IPR008654 IWS1, C-terminal "; GO:0005634 NbS00004799g0014.1 protein AED:0.28 eAED:0.28 QI:76|0.61|0.57|0.78|0.92|0.85|14|242|585; (*GB) gi|225427072|ref|XP_002275808.1| (e_value=0.0) PREDICTED: phosphomevalonate kinase [Vitis vinifera];; (*TAIR) AT1G31910.1 (e_value=0.0) | Symbols: | GHMP kinase family protein | chr1:11459050-11461649 FORWARD LENGTH=505;; (*ITAG) Solyc06g066310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37981147-37988810 transcript_region:SL2.40ch06:37981147..37988810- go_terms:GO:0016310 functional_description:"Phosphomevalonate kinase (AHRD V1 ***- Q944G1_HEVBR); contains Interpro domain(s) IPR016005 Phosphomevalonate kinase, ERG8 "; GO:0016310 NbS00004799g0005.1 protein AED:0.40 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|357481175|ref|XP_003610873.1| (e_value=1e-32) Diphthamide biosynthesis protein [Medicago truncatula];; (*SWP) sp|Q6BPU5|DPH1_DEBHA (e_value=1e-22) Diphthamide biosynthesis protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPH1 PE=3 SV=2;; (*TAIR) AT5G62030.1 (e_value=2e-30) | Symbols: | diphthamide synthesis DPH2 family protein | chr5:24919046-24920407 FORWARD LENGTH=453;; (*ITAG) Solyc06g066300.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37979102-37980553 transcript_region:SL2.40ch06:37979102..37980553- go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 1 (AHRD V1 ***- B6TW72_MAIZE); contains Interpro domain(s) IPR016435 Diphthamide synthesis, DHP1 "; GO:0005515 NbS00033575g0004.1 protein AED:0.02 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|223; (*GB) gi|255562558|ref|XP_002522285.1| (e_value=3e-93) Cyclic phosphodiesterase, putative [Ricinus communis];; (*SWP) sp|O04147|CPD_ARATH (e_value=1e-71) Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1;; (*TAIR) AT4G18930.1 (e_value=1e-72) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370797-10371885 FORWARD LENGTH=181;; (*ITAG) Solyc03g005930.2.1 (e_value=2e-118) genomic_reference:SL2.40ch03 gene_region:628731-631838 transcript_region:SL2.40ch03:628731..631838- go_terms:GO:0004112,GO:0005622 functional_description:"Cyclic phosphodiesterase (AHRD V1 ***- D7M9D2_ARALY); contains Interpro domain(s) IPR012386 2 , 3 cyclic phosphodiesterase, plant "; GO:0004112,GO:0005622 NbS00019216g0003.1 protein AED:0.38 eAED:0.38 QI:178|1|1|1|1|1|4|0|138; (*GB) gi|225431463|ref|XP_002280638.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100248924 [Vitis vinifera];; (*TAIR) AT1G74880.1 (e_value=2e-35) | Symbols: NDH-O | NAD(P)H:plastoquinone dehydrogenase complex subunit O | chr1:28130112-28131020 REVERSE LENGTH=158;; (*ITAG) Solyc11g006020.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:823065-824447 transcript_region:SL2.40ch11:823065..824447- functional_description:"NAD(P)H-quinone oxidoreductase subunit O (AHRD V1 *-*- NDHO_GLOVI)"; NbS00037529g0005.1 protein AED:0.04 eAED:0.04 QI:1109|1|1|1|0.5|0.66|3|112|295; (*GB) gi|255557635|ref|XP_002519847.1| (e_value=2e-156) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=3e-146) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=2e-147) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g077170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58247937-58253733 transcript_region:SL2.40ch08:58247937..58253733+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00000144g0005.1 protein AED:0.15 eAED:0.16 QI:119|0.71|0.5|1|0.71|0.75|8|0|383; (*GB) gi|224133450|ref|XP_002328045.1| (e_value=0.0) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=2e-153) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=1e-154) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc10g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2315211-2319689 transcript_region:SL2.40ch10:2315211..2319689- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00000144g0002.1 protein AED:0.30 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|89 NbS00016278g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.72|0.33|1|0.90|0.83|12|394|1810; (*GB) gi|359484251|ref|XP_002277493.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249222 [Vitis vinifera];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=4e-42) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT2G03140.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:942000-950223 FORWARD LENGTH=1883;; (*ITAG) Solyc07g042500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53087928-53101146 transcript_region:SL2.40ch07:53087928..53101146+ go_terms:GO:0016020 functional_description:"Abhydrolase domain containing 3 (AHRD V1 *--- Q66HU2_DANRE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00016278g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|224069236|ref|XP_002326308.1| (e_value=7e-46) SAUR family protein [Populus trichocarpa];; (*TAIR) AT5G20820.1 (e_value=2e-30) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7046911-7047294 REVERSE LENGTH=127;; (*ITAG) Solyc07g042490.1.1 (e_value=3e-66) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:53019216-53019608 transcript_region:SL2.40ch07:53019216..53019608- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 ***- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00016278g0103.1 protein AED:0.17 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|160 NbS00016278g0109.1 protein AED:0.09 eAED:0.09 QI:59|0.77|0.7|1|0.88|0.8|10|0|840 NbS00016278g0110.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|0.5|1|1|2|142|126 NbS00016278g0101.1 protein AED:0.23 eAED:0.23 QI:0|0.91|0.84|0.92|1|1|13|254|805 NbS00016278g0304.1 protein AED:0.20 eAED:0.20 QI:284|1|1|1|1|1|8|356|231 NbS00019248g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|122; (*GB) gi|76160976|gb|ABA40451.1| (e_value=5e-76) unknown [Solanum tuberosum];; (*TAIR) AT4G26210.2 (e_value=2e-70) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:13282370-13283118 FORWARD LENGTH=122;; (*ITAG) Solyc07g026770.2.1 (e_value=8e-79) genomic_reference:SL2.40ch07 gene_region:31132623-31137555 transcript_region:SL2.40ch07:31132623..31137555- go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- D7MFB8_ARALY); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00019248g0024.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|159; (*ITAG) Solyc01g094740.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019248g0008.1 protein AED:0.08 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|290; (*GB) gi|109289903|gb|AAP45178.2| (e_value=5e-66) Zinc knuckle family protein [Solanum bulbocastanum];; (*ITAG) Solyc04g026040.1.1 (e_value=4e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:24002292-24002951 transcript_region:SL2.40ch04:24002292..24002951+ functional_description:"Zinc knuckle family protein (AHRD V1 *-*- Q7XA28_SOLBU)"; NbS00019248g0029.1 protein AED:0.43 eAED:0.43 QI:0|0|0.33|0.66|0|0|3|0|188; (*GB) gi|54261828|gb|AAV31178.1| (e_value=2e-44) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc10g055510.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:52366758-52368603 transcript_region:SL2.40ch10:52366758..52368603- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SKM2_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00019248g0022.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|428; (*GB) gi|113205208|gb|AAT39951.2| (e_value=1e-77) Disease resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-44) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G58390.1 (e_value=5e-14) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21690962-21693891 REVERSE LENGTH=907;; (*ITAG) Solyc05g005130.1.1 (e_value=4e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:118314-124329 transcript_region:SL2.40ch05:118314..124329- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00019248g0023.1 protein AED:0.67 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|170 NbS00019248g0027.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|192; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=2e-39) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=1e-26) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=2e-22) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc06g008380.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2318596-2320688 transcript_region:SL2.40ch06:2318596..2320688- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00017936g0004.1 protein AED:0.04 eAED:0.04 QI:147|0.5|0|1|1|1|3|0|759; (*GB) gi|224061803|ref|XP_002300606.1| (e_value=2e-137) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25070.1 (e_value=4e-90) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8641261-8643471 REVERSE LENGTH=736; NbS00001148g0016.1 protein AED:0.16 eAED:0.16 QI:1086|1|1|1|0.5|0.57|7|476|236; (*GB) gi|255564345|ref|XP_002523169.1| (e_value=2e-144) sphingolipid fatty acid alpha hydroxylase [Ricinus communis];; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=3e-58) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=1e-138) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=1e-115) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00001148g0021.1 protein AED:0.18 eAED:0.19 QI:454|0|0.5|1|0|0|2|0|385; (*GB) gi|350537309|ref|NP_001234800.1| (e_value=2e-27) ethylene-responsive nuclear protein [Solanum lycopersicum];; (*ITAG) Solyc02g022920.1.1 (e_value=1e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15128281-15129522 transcript_region:SL2.40ch02:15128281..15129522+ functional_description:"Ethylene-responsive nuclear protein (AHRD V1 ***- Q38MV1_SOLLC)"; NbS00001148g0020.1 protein AED:0.70 eAED:0.95 QI:0|0|0|1|1|1|3|0|139 NbS00001148g0004.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.5|1|0|0|4|455|319; (*GB) gi|226506550|ref|NP_001141544.1| (e_value=2e-158) uncharacterized protein LOC100273658 [Zea mays];; (*SWP) sp|P18025|TBB1_MAIZE (e_value=6e-158) Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1;; (*TAIR) AT5G23860.2 (e_value=3e-158) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc10g086760.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64808095-64809620 transcript_region:SL2.40ch10:64808095..64809620- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbS00001148g0022.1 protein AED:0.19 eAED:0.65 QI:0|0.33|0.25|1|0|0|4|0|142; (*GB) gi|294464310|gb|ADE77668.1| (e_value=8e-12) unknown [Picea sitchensis];; (*ITAG) Solyc02g022910.2.1 (e_value=3e-18) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00058219g0006.1 protein AED:0.09 eAED:0.09 QI:348|0.8|0.83|1|0.6|0.66|6|130|290; (*GB) gi|225460711|ref|XP_002270879.1| (e_value=1e-74) PREDICTED: magnesium transporter NIPA2-like [Vitis vinifera];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=2e-32) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G34470.1 (e_value=1e-71) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc11g017380.1.1 (e_value=6e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8297803-8309880 transcript_region:SL2.40ch11:8297803..8309880+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00030830g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|5|1449|335; (*GB) gi|225454180|ref|XP_002272142.1| (e_value=3e-100) PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera];; (*TAIR) AT2G45850.2 (e_value=1e-59) | Symbols: | AT hook motif DNA-binding family protein | chr2:18871901-18873457 REVERSE LENGTH=348;; (*ITAG) Solyc01g094460.2.1 (e_value=5e-172) genomic_reference:SL2.40ch01 gene_region:77689811-77694407 transcript_region:SL2.40ch01:77689811..77694407- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00030830g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|224127636|ref|XP_002320123.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=8e-46) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc01g094440.1.1 (e_value=3e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:77683954-77684523 transcript_region:SL2.40ch01:77683954..77684523+ functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00003438g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|225464055|ref|XP_002266123.1| (e_value=7e-41) PREDICTED: uncharacterized protein LOC100254077 [Vitis vinifera];; (*TAIR) AT1G21150.1 (e_value=6e-30) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc12g010650.1.1 (e_value=9e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00003755g0010.1 protein AED:0.21 eAED:0.24 QI:0|0.95|0.90|1|0.75|0.85|21|0|1052; (*GB) gi|225433707|ref|XP_002268048.1| (e_value=0.0) PREDICTED: probable importin-7 homolog [Vitis vinifera];; (*SWP) sp|Q55CX9|IPO7_DICDI (e_value=2e-145) Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1;; (*TAIR) AT2G31660.1 (e_value=0.0) | Symbols: SAD2, URM9 | ARM repeat superfamily protein | chr2:13464519-13471353 FORWARD LENGTH=1040;; (*ITAG) Solyc09g098240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67365058-67377466 transcript_region:SL2.40ch09:67365058..67377466- go_terms:GO:0008536 functional_description:"Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7) (AHRD V1 **** D8LDH6_ECTSI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008536 NbS00003755g0109.1 protein AED:0.10 eAED:0.10 QI:0|1|0.87|1|0.82|0.91|24|0|1320 NbC26213611g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|164; (*GB) gi|4887012|gb|AAD32142.1|AF123504_1 (e_value=2e-106) Nt-iaa2.3 deduced protein [Nicotiana tabacum];; (*SWP) sp|P33077|IAA4_ARATH (e_value=3e-72) Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2;; (*TAIR) AT5G43700.1 (e_value=2e-73) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g083280.2.1 (e_value=3e-85) genomic_reference:SL2.40ch09 gene_region:64330790-64332575 transcript_region:SL2.40ch09:64330790..64332575- go_terms:GO:0017075 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0017075 NbS00002442g0001.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.5|1|1|1|6|0|391; (*GB) gi|359477228|ref|XP_002271465.2| (e_value=4e-153) PREDICTED: uncharacterized protein LOC100258588 [Vitis vinifera];; (*TAIR) AT4G16100.1 (e_value=2e-105) | Symbols: | Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394;; (*ITAG) Solyc01g065560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64286841-64290681 transcript_region:SL2.40ch01:64286841..64290681- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00002442g0008.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.25|1|0.66|0.75|4|0|181; (*GB) gi|224110250|ref|XP_002315460.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJ17|DI197_ARATH (e_value=4e-54) Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2;; (*TAIR) AT5G49230.1 (e_value=3e-55) | Symbols: HRB1 | Drought-responsive family protein | chr5:19959048-19960422 REVERSE LENGTH=211;; (*ITAG) Solyc01g065550.2.1 (e_value=5e-99) genomic_reference:SL2.40ch01 gene_region:64281108-64286492 transcript_region:SL2.40ch01:64281108..64286492+ go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 4 (AHRD V1 ***- DI194_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00009083g0016.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|958; (*GB) gi|7672732|gb|AAF66615.1| (e_value=0.0) LRR receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc01g108840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87756900-87761019 transcript_region:SL2.40ch01:87756900..87761019- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00009083g0002.1 protein AED:0.19 eAED:0.19 QI:439|1|1|1|0.88|0.77|18|964|560; (*GB) gi|359474925|ref|XP_002263382.2| (e_value=0.0) PREDICTED: beta-galactosidase 3-like [Vitis vinifera];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=0.0) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.2 (e_value=0.0) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=855;; (*ITAG) Solyc01g110000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88587290-88593387 transcript_region:SL2.40ch01:88587290..88593387+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B9H0V1_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00009083g0017.1 protein AED:0.23 eAED:0.25 QI:0|0.77|0.68|1|0.72|0.73|19|0|1047; (*GB) gi|297744765|emb|CBI38027.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NW13|RBM28_HUMAN (e_value=7e-42) RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3;; (*TAIR) AT2G21440.1 (e_value=0.0) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:9173712-9179065 REVERSE LENGTH=1003;; (*ITAG) Solyc01g109990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88568486-88580603 transcript_region:SL2.40ch01:88568486..88580603+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 28 (AHRD V1 *--- B0X2T7_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00010661g0003.1 protein AED:0.19 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|166; (*GB) gi|147822174|emb|CAN77043.1| (e_value=5e-35) hypothetical protein VITISV_039089 [Vitis vinifera];; (*TAIR) AT5G41960.1 (e_value=9e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16789760-16790868 FORWARD LENGTH=217;; (*ITAG) Solyc08g083030.2.1 (e_value=2e-48) genomic_reference:SL2.40ch08 gene_region:62787635-62790415 transcript_region:SL2.40ch08:62787635..62790415- functional_description:"Unknown Protein (AHRD V1)"; NbS00010661g0002.1 protein AED:0.23 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|119 NbS00010661g0013.1 protein AED:0.59 eAED:0.59 QI:108|0|0.5|0.5|0|0|2|0|80 NbS00010661g0012.1 protein AED:0.13 eAED:0.16 QI:0|0|0.14|1|0.16|0.14|7|1169|656; (*GB) gi|255577256|ref|XP_002529510.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SAJ5|PP133_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1;; (*TAIR) AT1G79540.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29920334-29922676 REVERSE LENGTH=780;; (*ITAG) Solyc02g083780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41627837-41631881 transcript_region:SL2.40ch02:41627837..41631881- go_terms:GO:0016773 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016773 NbS00010661g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|0.4|1|0.75|1|5|0|663; (*GB) gi|255545548|ref|XP_002513834.1| (e_value=3e-123) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G36990.1 (e_value=1e-83) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581;; (*ITAG) Solyc11g013760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7141588-7146007 transcript_region:SL2.40ch11:7141588..7146007+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041049g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|1|1|2|395|159; (*GB) gi|76160970|gb|ABA40448.1| (e_value=4e-74) fructokinase 2-like protein [Solanum tuberosum];; (*SWP) sp|Q9SID1|STH_ARATH (e_value=1e-31) Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2;; (*TAIR) AT2G31380.1 (e_value=9e-33) | Symbols: STH | salt tolerance homologue | chr2:13382150-13383302 FORWARD LENGTH=238;; (*ITAG) Solyc06g073180.2.1 (e_value=7e-74) genomic_reference:SL2.40ch06 gene_region:41479688-41483031 transcript_region:SL2.40ch06:41479688..41483031+ go_terms:GO:0003700,GO:0019904 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0003700,GO:0019904 NbS00041049g0006.1 protein AED:0.47 eAED:0.67 QI:0|0|0|1|0|0|2|0|62; (*GB) gi|83596111|gb|ABC25454.1| (e_value=2e-18) zinc finger B-box protein [Solanum sogarandinum];; (*SWP) sp|Q96288|STO_ARATH (e_value=1e-17) Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1;; (*TAIR) AT1G06040.1 (e_value=1e-18) | Symbols: STO | B-box zinc finger family protein | chr1:1828662-1829659 REVERSE LENGTH=248;; (*ITAG) Solyc06g073180.2.1 (e_value=4e-21) genomic_reference:SL2.40ch06 gene_region:41479688-41483031 transcript_region:SL2.40ch06:41479688..41483031+ go_terms:GO:0003700,GO:0019904 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0003700,GO:0019904 NbS00000477g0007.1 protein AED:0.09 eAED:0.09 QI:93|1|1|1|1|1|2|270|511; (*GB) gi|85068634|gb|ABC69397.1| (e_value=0.0) CYP71D48v1 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=9e-119) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc06g060190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34539342-34541210 transcript_region:SL2.40ch06:34539342..34541210- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000477g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.6|1|0.75|0.8|5|0|316; (*GB) gi|356563970|ref|XP_003550230.1| (e_value=3e-128) PREDICTED: E3 ubiquitin-protein ligase AIP2-like isoform 1 [Glycine max];; (*SWP) sp|Q8RXD3|AIP2_ARATH (e_value=3e-112) E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2 PE=1 SV=1;; (*TAIR) AT5G20910.1 (e_value=2e-113) | Symbols: AIP2 | RING/U-box superfamily protein | chr5:7092663-7094310 REVERSE LENGTH=310;; (*ITAG) Solyc08g067290.2.1 (e_value=2e-171) genomic_reference:SL2.40ch08 gene_region:53557801-53561293 transcript_region:SL2.40ch08:53557801..53561293- go_terms:GO:0008270 functional_description:"RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007294g0013.1 protein AED:0.29 eAED:0.33 QI:0|0.66|0.57|1|0.83|0.71|7|0|481; (*GB) gi|225439717|ref|XP_002273012.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Vitis vinifera];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=4e-175) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=3e-176) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc03g095510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50069695-50073790 transcript_region:SL2.40ch03:50069695..50073790- go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- D3BIR2_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007294g0011.1 protein AED:0.21 eAED:0.21 QI:253|0.75|0.8|1|0.25|0.6|5|430|119; (*GB) gi|224127868|ref|XP_002329197.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|P85801|TRXH_POPJC (e_value=3e-36) Thioredoxin H-type OS=Populus jackii PE=1 SV=1;; (*TAIR) AT3G08710.2 (e_value=2e-35) | Symbols: ATH9, TRX H9, TH9 | thioredoxin H-type 9 | chr3:2645590-2646304 FORWARD LENGTH=140;; (*ITAG) Solyc03g095500.2.1 (e_value=8e-67) genomic_reference:SL2.40ch03 gene_region:50068455-50069523 transcript_region:SL2.40ch03:50068455..50069523+ go_terms:GO:0045454 functional_description:"Thioredoxin h-like protein (AHRD V1 ***- Q8H6X3_TOBAC); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00007294g0015.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0.33|1|0.5|0.33|3|0|660; (*GB) gi|359478866|ref|XP_002276162.2| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g58300 [Vitis vinifera];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=0.0) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc03g095490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50063905-50066754 transcript_region:SL2.40ch03:50063905..50066754+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00007294g0016.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.25|1|1|4|0|104 NbS00007577g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.8|1|1|1|5|0|391; (*GB) gi|224106001|ref|XP_002314008.1| (e_value=1e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY82|FB121_ARATH (e_value=3e-140) F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1;; (*TAIR) AT2G32560.1 (e_value=2e-141) | Symbols: | F-box family protein | chr2:13824820-13826761 FORWARD LENGTH=371;; (*ITAG) Solyc11g065000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47407870-47411425 transcript_region:SL2.40ch11:47407870..47411425+ functional_description:"F-box family protein (AHRD V1 ***- B9GG65_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00007577g0014.1 protein AED:0.20 eAED:0.20 QI:237|0.88|0.9|1|0.22|0.6|10|150|399; (*GB) gi|296088545|emb|CBI37536.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q941R4|GONS1_ARATH (e_value=1e-176) GDP-mannose transporter GONST1 OS=Arabidopsis thaliana GN=GONST1 PE=1 SV=2;; (*TAIR) AT2G13650.3 (e_value=1e-177) | Symbols: GONST1 | golgi nucleotide sugar transporter 1 | chr2:5687584-5690303 REVERSE LENGTH=333;; (*ITAG) Solyc01g008690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2740475-2744521 transcript_region:SL2.40ch01:2740475..2744521- go_terms:GO:0005515,GO:0005458 functional_description:"GDP-mannose transporter (AHRD V1 **** B2VUF6_PYRTR)"; GO:0005515,GO:0005458 NbS00007577g0002.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|360; (*GB) gi|147858665|emb|CAN78684.1| (e_value=2e-38) hypothetical protein VITISV_043890 [Vitis vinifera];; (*TAIR) AT2G26530.1 (e_value=2e-11) | Symbols: AR781 | Protein of unknown function (DUF1645) | chr2:11283036-11283989 REVERSE LENGTH=317;; (*ITAG) Solyc11g065010.1.1 (e_value=6e-176) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:47412113-47413156 transcript_region:SL2.40ch11:47412113..47413156- functional_description:"AR781 (AHRD V1 *-*- O48720_ARATH)"; NbS00007577g0009.1 protein AED:0.50 eAED:0.50 QI:0|1|0.5|1|0|0|2|0|81; (*GB) gi|296083890|emb|CBI24278.3| (e_value=1e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G26810.2 (e_value=8e-22) | Symbols: | Putative methyltransferase family protein | chr2:11433900-11436078 REVERSE LENGTH=256;; (*ITAG) Solyc11g065040.1.1 (e_value=5e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47431290-47434506 transcript_region:SL2.40ch11:47431290..47434506- functional_description:"Methyltransferase type 12 (AHRD V1 *--- A1BDZ1_CHLPD); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00056798g0008.1 protein AED:0.32 eAED:0.33 QI:53|0.33|0.28|1|0.33|0.42|7|105|144 NbS00056798g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|379; (*GB) gi|225423977|ref|XP_002282578.1| (e_value=6e-104) PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera];; (*SWP) sp|Q8RWD0|COL16_ARATH (e_value=1e-81) Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2;; (*TAIR) AT1G25440.1 (e_value=8e-83) | Symbols: | B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417;; (*ITAG) Solyc04g007210.2.1 (e_value=4e-155) genomic_reference:SL2.40ch04 gene_region:904265-906430 transcript_region:SL2.40ch04:904265..906430- go_terms:GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 16 (AHRD V1 ***- B6TEI1_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00050000g0001.1 protein AED:0.13 eAED:0.13 QI:37|-1|0|1|-1|0|1|0|53 NbS00009856g0011.1 protein AED:0.15 eAED:0.17 QI:0|1|0.75|1|1|1|4|339|290; (*GB) gi|225448948|ref|XP_002268646.1| (e_value=1e-110) PREDICTED: 50S ribosomal protein L15 [Vitis vinifera];; (*SWP) sp|A9H3K5|RL15_GLUDA (e_value=4e-27) 50S ribosomal protein L15 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplO PE=3 SV=1;; (*TAIR) AT5G64670.1 (e_value=4e-107) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr5:25852535-25853880 REVERSE LENGTH=281;; (*ITAG) Solyc02g081310.2.1 (e_value=6e-131) genomic_reference:SL2.40ch02 gene_region:39901020-39904709 transcript_region:SL2.40ch02:39901020..39904709- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 ***- D0P1Y0_PHYIN); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00009856g0013.1 protein AED:0.02 eAED:0.02 QI:83|1|1|1|0.57|0.62|8|257|374; (*GB) gi|357445673|ref|XP_003593114.1| (e_value=3e-105) Auxin-induced protein 5NG4 [Medicago truncatula];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=6e-57) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G68170.1 (e_value=1e-72) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:25551925-25554258 FORWARD LENGTH=356;; (*ITAG) Solyc11g005350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:274195-279749 transcript_region:SL2.40ch11:274195..279749- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00009856g0015.1 protein AED:0.09 eAED:0.10 QI:11|1|0.33|1|1|1|3|0|367; (*GB) gi|342837524|dbj|BAK57343.1| (e_value=0.0) actin1 [Morella rubra];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00009856g0018.1 protein AED:0.21 eAED:0.33 QI:0|0.5|0|1|0|0|3|0|76; (*GB) gi|255562385|ref|XP_002522199.1| (e_value=3e-27) structural molecule, putative [Ricinus communis];; (*SWP) sp|Q5M755|PAP7_ARATH (e_value=1e-23) Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1;; (*TAIR) AT5G09820.1 (e_value=7e-25) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:3056219-3057380 REVERSE LENGTH=259;; (*ITAG) Solyc11g005340.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:269717-272662 transcript_region:SL2.40ch11:269717..272662- go_terms:GO:0009507 functional_description:"PAP fibrillin family protein (AHRD V1 **-- B5W0K3_SPIMA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00009856g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00009856g0017.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|0|0|3|0|117; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-38) hypothetical protein [Nicotiana tabacum]; NbS00018505g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.63|0.5|0.91|0.72|0.75|12|386|322; (*GB) gi|255555917|ref|XP_002518994.1| (e_value=2e-82) DNA-binding protein EMBP-1, putative [Ricinus communis];; (*SWP) sp|Q99091|CPRF3_PETCR (e_value=1e-28) Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1;; (*TAIR) AT2G35530.1 (e_value=5e-71) | Symbols: bZIP16, AtbZIP16 | basic region/leucine zipper transcription factor 16 | chr2:14923280-14926025 REVERSE LENGTH=409;; (*ITAG) Solyc08g076100.2.1 (e_value=1e-95) genomic_reference:SL2.40ch08 gene_region:57304940-57314726 transcript_region:SL2.40ch08:57304940..57314726- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00031979g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.87|1|1|1|8|0|470; (*GB) gi|27597229|dbj|BAC55155.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SDZ9|PPAF2_IPOBA (e_value=0.0) Purple acid phosphatase 2 OS=Ipomoea batatas GN=PAP2 PE=1 SV=1;; (*TAIR) AT2G16430.2 (e_value=0.0) | Symbols: PAP10, ATPAP10 | purple acid phosphatase 10 | chr2:7120502-7122772 REVERSE LENGTH=468;; (*ITAG) Solyc01g110060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88618467-88622227 transcript_region:SL2.40ch01:88618467..88622227- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** Q84KZ2_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00031979g0012.1 protein AED:0.30 eAED:0.30 QI:292|1|0.91|1|0.54|0.66|12|286|491; (*GB) gi|225427694|ref|XP_002274240.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q6DKP5|WDR13_PANTR (e_value=2e-65) WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3 SV=1;; (*TAIR) AT2G16405.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:7105915-7108787 REVERSE LENGTH=482;; (*ITAG) Solyc01g110030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88604505-88612650 transcript_region:SL2.40ch01:88604505..88612650- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IVX2_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00031979g0010.1 protein AED:0.36 eAED:0.36 QI:0|0.8|0.83|1|0.4|0.33|6|507|235; (*GB) gi|297744763|emb|CBI38025.3| (e_value=5e-138) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G22140.2 (e_value=2e-110) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc01g110020.2.1 (e_value=1e-147) genomic_reference:SL2.40ch01 gene_region:88598046-88604435 transcript_region:SL2.40ch01:88598046..88604435+ go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00009008g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.77|0.7|1|0.55|0.6|10|464|308; (*GB) gi|113208412|gb|ABI34553.1| (e_value=2e-145) hypothetical protein SBB1_21t00009 [Solanum bulbocastanum];; (*TAIR) AT5G48790.1 (e_value=4e-118) | Symbols: | Domain of unknown function (DUF1995) | chr5:19780010-19781977 REVERSE LENGTH=316;; (*ITAG) Solyc08g075990.2.1 (e_value=4e-151) genomic_reference:SL2.40ch08 gene_region:57224063-57227981 transcript_region:SL2.40ch08:57224063..57227981- functional_description:"Os02g0129300 protein (Fragment) (AHRD V1 *-*- Q0E498_ORYSJ); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00009008g0005.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|69 NbS00028089g0018.1 protein AED:0.07 eAED:0.08 QI:193|1|0.83|1|1|1|6|0|442; (*GB) gi|356528958|ref|XP_003533064.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-49) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G52630.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:19606470-19608526 REVERSE LENGTH=439;; (*ITAG) Solyc03g116550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59975687-59978494 transcript_region:SL2.40ch03:59975687..59978494+ functional_description:"AT1G52630-like protein (Fragment) (AHRD V1 *-*- D6PNR4_9BRAS); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00028089g0005.1 protein AED:0.34 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|297743427|emb|CBI36294.3| (e_value=1e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SSR6|PPR78_ARATH (e_value=7e-66) Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1;; (*TAIR) AT1G52640.1 (e_value=5e-67) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19608857-19610428 REVERSE LENGTH=523;; (*ITAG) Solyc03g116540.1.1 (e_value=1e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59971465-59972958 transcript_region:SL2.40ch03:59971465..59972958+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJJ1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028089g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|293335973|ref|NP_001167662.1| (e_value=5e-86) calmodulin [Zea mays];; (*SWP) sp|P17928|CALM_MEDSA (e_value=8e-87) Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=7e-88) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=6e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028089g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.66|1|0|0.33|3|1034|817; (*GB) gi|359482689|ref|XP_003632809.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g52620-like [Vitis vinifera];; (*SWP) sp|Q9SSR4|PPR77_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1;; (*TAIR) AT1G52620.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19603828-19606287 FORWARD LENGTH=819;; (*ITAG) Solyc03g116560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59980181-59982625 transcript_region:SL2.40ch03:59980181..59982625- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJI9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028089g0021.1 protein AED:0.33 eAED:0.33 QI:210|1|1|1|0.75|0.88|9|251|249; (*GB) gi|14594925|emb|CAC43323.1| (e_value=8e-167) putative alpha7 proteasome subunit [Nicotiana tabacum];; (*SWP) sp|O24362|PSA3_SPIOL (e_value=1e-161) Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1;; (*TAIR) AT2G27020.1 (e_value=2e-159) | Symbols: PAG1 | 20S proteasome alpha subunit G1 | chr2:11528515-11530858 REVERSE LENGTH=249;; (*ITAG) Solyc10g077030.1.1 (e_value=9e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59270503-59275704 transcript_region:SL2.40ch10:59270503..59275704- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q93X34_TOBAC); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00028089g0025.1 protein AED:0.36 eAED:0.37 QI:0|0.8|0.83|1|0.8|0.83|6|222|271; (*GB) gi|224089873|ref|XP_002308845.1| (e_value=1e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FF66|UBC22_ARATH (e_value=1e-125) Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1;; (*TAIR) AT5G05080.2 (e_value=1e-126) | Symbols: UBC22, ATUBC22 | ubiquitin-conjugating enzyme 22 | chr5:1498727-1499972 REVERSE LENGTH=251;; (*ITAG) Solyc10g081160.1.1 (e_value=2e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61623908-61626036 transcript_region:SL2.40ch10:61623908..61626036+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 S (AHRD V1 ***- UBE2S_XENTR); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00028089g0019.1 protein AED:0.35 eAED:0.42 QI:0|0.5|0.4|0.8|1|1|5|0|324; (*GB) gi|225457213|ref|XP_002284026.1| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=7e-29) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G61030.1 (e_value=1e-47) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=8e-41) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00028089g0024.1 protein AED:0.73 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|60 NbS00035796g0004.1 protein AED:0.43 eAED:0.43 QI:49|0.66|0.5|0.75|1|0.75|4|0|157; (*GB) gi|225462005|ref|XP_002272794.1| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100244627 isoform 1 [Vitis vinifera];; (*TAIR) AT1G56200.2 (e_value=2e-13) | Symbols: emb1303 | embryo defective 1303 | chr1:21030852-21031886 FORWARD LENGTH=151;; (*ITAG) Solyc04g051850.2.1 (e_value=6e-54) genomic_reference:SL2.40ch04 gene_region:50309231-50311889 transcript_region:SL2.40ch04:50309231..50311889+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039211g0004.1 protein AED:0.08 eAED:0.20 QI:0|1|0.66|1|1|1|3|0|342; (*GB) gi|356545756|ref|XP_003541301.1| (e_value=6e-75) PREDICTED: transcription factor MYB12-like [Glycine max];; (*SWP) sp|P10290|MYBC_MAIZE (e_value=7e-60) Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=3e-60) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc12g049300.1.1 (e_value=2e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46232171-46233950 transcript_region:SL2.40ch12:46232171..46233950+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- D0VYJ9_DIOKA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00010140g0005.1 protein AED:0.06 eAED:0.06 QI:39|1|1|1|1|1|5|320|291; (*GB) gi|151347473|gb|ABS01349.1| (e_value=0.0) hypersensitive-induced response protein [Carica papaya];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=0.0) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=0.0) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00000438g0006.1 protein AED:0.15 eAED:0.15 QI:436|1|1|1|0.88|0.8|10|328|535; (*GB) gi|255585772|ref|XP_002533566.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B0XN12|EXGA_ASPFC (e_value=5e-39) Probable glucan 1,3-beta-glucosidase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=exgA PE=3 SV=1;; (*ITAG) Solyc11g010350.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3424101-3427557 transcript_region:SL2.40ch11:3424101..3427557+ go_terms:GO:0005975 functional_description:"Glucan 1 3-beta-glucosidase (AHRD V1 *-*- C1H4T0_PARBA); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00000438g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|357463265|ref|XP_003601914.1| (e_value=7e-89) hypothetical protein MTR_3g086740 [Medicago truncatula];; (*TAIR) AT5G65340.1 (e_value=3e-86) | Symbols: | Protein of unknown function, DUF617 | chr5:26113684-26114445 REVERSE LENGTH=253;; (*ITAG) Solyc11g010360.1.1 (e_value=7e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3435328-3436035 transcript_region:SL2.40ch11:3435328..3436035- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00019233g0007.1 protein AED:0.41 eAED:0.41 QI:0|1|0.75|1|1|1|4|0|169; (*GB) gi|225443566|ref|XP_002273293.1| (e_value=7e-75) PREDICTED: OPA3-like protein [Vitis vinifera];; (*SWP) sp|Q9P7W0|OPA3_SCHPO (e_value=9e-19) OPA3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.11 PE=2 SV=1;; (*TAIR) AT1G28510.1 (e_value=1e-67) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc02g077470.2.1 (e_value=3e-99) genomic_reference:SL2.40ch02 gene_region:36976056-36983200 transcript_region:SL2.40ch02:36976056..36983200- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00019233g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|553; (*GB) gi|222631727|gb|EEE63859.1| (e_value=2e-40) hypothetical protein OsJ_18683 [Oryza sativa Japonica Group];; (*SWP) sp|Q76MV0|H32_TOBAC (e_value=6e-40) Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1;; (*TAIR) AT5G65360.1 (e_value=5e-41) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008920.1.1 (e_value=3e-174) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:2937341-2938642 transcript_region:SL2.40ch10:2937341..2938642+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00020176g0018.1 protein AED:0.03 eAED:0.03 QI:265|1|1|1|1|0.90|11|0|695; (*GB) gi|225447959|ref|XP_002267673.1| (e_value=0.0) PREDICTED: probable importin subunit beta-4 [Vitis vinifera];; (*SWP) sp|O60100|IMB4_SCHPO (e_value=6e-60) Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=2 SV=1;; (*TAIR) AT4G27640.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:13798013-13802976 REVERSE LENGTH=1048;; (*ITAG) Solyc01g104070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84302060-84310824 transcript_region:SL2.40ch01:84302060..84310824- go_terms:GO:0006886,GO:0005488 functional_description:"Importin beta (AHRD V1 **-- D2VK12_NAEGR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00020176g0021.1 protein AED:0.14 eAED:0.14 QI:222|0.91|0.97|1|0.85|0.88|35|973|1604; (*GB) gi|297838947|ref|XP_002887355.1| (e_value=0.0) UDP-glucose:glycoprotein glucosyltransferase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q0WL80|UGGG_ARATH (e_value=0.0) UDP-glucose:glycoprotein glucosyltransferase OS=Arabidopsis thaliana GN=UGGT PE=1 SV=1;; (*TAIR) AT1G71220.1 (e_value=0.0) | Symbols: EBS1, UGGT, PSL2 | UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups | chr1:26841664-26851730 FORWARD LENGTH=1613;; (*ITAG) Solyc01g104040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84263681-84287075 transcript_region:SL2.40ch01:84263681..84287075- go_terms:GO:0003980,GO:0051082 functional_description:"UDP-glucose glycoprotein glucosyltransferase (AHRD V1 **** D7KYS8_ARALY); contains Interpro domain(s) IPR009448 UDP-glucose:Glycoprotein Glucosyltransferase "; GO:0003980,GO:0051082 NbS00020176g0019.1 protein AED:0.12 eAED:0.14 QI:0|0.87|0.55|1|0.87|0.77|9|405|350; (*GB) gi|147778567|emb|CAN76102.1| (e_value=8e-169) hypothetical protein VITISV_007422 [Vitis vinifera];; (*SWP) sp|O60100|IMB4_SCHPO (e_value=3e-18) Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=2 SV=1;; (*TAIR) AT4G27640.1 (e_value=1e-144) | Symbols: | ARM repeat superfamily protein | chr4:13798013-13802976 REVERSE LENGTH=1048;; (*ITAG) Solyc01g104070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84302060-84310824 transcript_region:SL2.40ch01:84302060..84310824- go_terms:GO:0006886,GO:0005488 functional_description:"Importin beta (AHRD V1 **-- D2VK12_NAEGR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00020176g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|62|626; (*GB) gi|225447949|ref|XP_002269016.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera];; (*SWP) sp|O04086|Y1105_ARATH (e_value=0.0) Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1;; (*TAIR) AT1G11050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3681892-3683769 FORWARD LENGTH=625;; (*ITAG) Solyc01g104050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84290143-84292557 transcript_region:SL2.40ch01:84290143..84292557- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM41_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020176g0020.1 protein AED:0.31 eAED:0.31 QI:63|1|0.91|1|0.72|0.75|12|0|414; (*GB) gi|225447955|ref|XP_002269147.1| (e_value=0.0) PREDICTED: aminomethyltransferase [Vitis vinifera];; (*SWP) sp|Q3AET7|GCST_CARHZ (e_value=5e-24) Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1;; (*TAIR) AT1G60990.3 (e_value=0.0) | Symbols: | Glycine cleavage T-protein family | chr1:22462771-22465416 REVERSE LENGTH=432;; (*ITAG) Solyc01g104060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84293946-84299197 transcript_region:SL2.40ch01:84293946..84299197- go_terms:GO:0005737 functional_description:"Aminomethyltransferase (AHRD V1 ***- B0JMM8_MICAN); contains Interpro domain(s) IPR006222 Glycine cleavage T-protein, N-terminal "; GO:0005737 NbS00050904g0005.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0|1|1|0.66|3|0|342; (*GB) gi|224087006|ref|XP_002308027.1| (e_value=2e-165) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41810.1 (e_value=5e-158) | Symbols: | Protein of unknown function, DUF642 | chr2:17439414-17441296 REVERSE LENGTH=370;; (*ITAG) Solyc04g015620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5924562-5927065 transcript_region:SL2.40ch04:5924562..5927065+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00050904g0006.1 protein AED:0.05 eAED:0.10 QI:0|0|0|0.5|0|0|2|0|475; (*GB) gi|225441815|ref|XP_002277987.1| (e_value=2e-91) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=6e-32) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT1G69550.1 (e_value=5e-31) | Symbols: | disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400;; (*ITAG) Solyc04g015630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5927164-5929199 transcript_region:SL2.40ch04:5927164..5929199- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00006747g0002.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|0|0|2|77|419; (*GB) gi|225429770|ref|XP_002280575.1| (e_value=3e-161) PREDICTED: uncharacterized protein LOC100262813 [Vitis vinifera];; (*TAIR) AT5G25500.1 (e_value=1e-127) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038029g0004.1 protein AED:0.26 eAED:0.26 QI:147|1|1|1|1|1|13|39|603; (*GB) gi|2829792|sp|P93568.1|SSY1_SOLTU (e_value=0.0) RecName: Full=Soluble starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Soluble starch synthase I; Short=SS I; Flags: Precursor;; (*SWP) sp|P93568|SSY1_SOLTU (e_value=0.0) Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G24300.2 (e_value=0.0) | Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652;; (*ITAG) Solyc03g083090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46453496-46464681 transcript_region:SL2.40ch03:46453496..46464681- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D5MWN9_BACSU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbS00004507g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.75|1|0.71|0.75|8|527|439; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=1e-149) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=2e-136) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.2 (e_value=5e-137) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405;; (*ITAG) Solyc10g005260.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:203437-211345 transcript_region:SL2.40ch10:203437..211345- go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **-* Q9LEB4_NICPL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00004507g0009.1 protein AED:0.21 eAED:0.21 QI:219|1|0.90|1|0.9|0.81|11|494|308; (*GB) gi|74038605|dbj|BAE43836.1| (e_value=1e-168) tobamovirus multiplication 1 [Nicotiana tabacum];; (*TAIR) AT4G21790.1 (e_value=3e-157) | Symbols: TOM1, ATTOM1 | tobamovirus multiplication 1 | chr4:11569924-11572163 FORWARD LENGTH=291;; (*ITAG) Solyc02g080370.2.1 (e_value=5e-165) genomic_reference:SL2.40ch02 gene_region:39185287-39192371 transcript_region:SL2.40ch02:39185287..39192371+ go_terms:GO:0005515 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515 NbS00004507g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|513; (*GB) gi|358248628|ref|NP_001239913.1| (e_value=9e-21) uncharacterized protein LOC100783413 [Glycine max];; (*TAIR) AT4G21895.1 (e_value=2e-18) | Symbols: | DNA binding | chr4:11613523-11614242 REVERSE LENGTH=239;; (*ITAG) Solyc10g005250.2.1 (e_value=2e-142) genomic_reference:SL2.40ch10 gene_region:199800-201389 transcript_region:SL2.40ch10:199800..201389+ functional_description:"Genomic DNA chromosome 5 P1 clone MXC20 (AHRD V1 *--- Q9FLX2_ARATH)"; NbS00004507g0119.1 protein AED:0.04 eAED:0.05 QI:0|0|0.5|1|0|0|2|0|332 NbS00004507g0117.1 protein AED:0.25 eAED:0.28 QI:151|0.66|0.42|0.85|0.16|0.42|7|0|385 NbS00004507g0118.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|0.5|2|0|76 NbS00013110g0010.1 protein AED:0.17 eAED:0.13 QI:541|0.8|0.63|1|0.8|0.63|11|493|1026; (*GB) gi|359478494|ref|XP_002276607.2| (e_value=8e-174) PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera];; (*TAIR) AT3G51620.2 (e_value=1e-138) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc06g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44564087-44570873 transcript_region:SL2.40ch06:44564087..44570873- functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00013110g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.5|1|1|1|4|295|225; (*GB) gi|255554489|ref|XP_002518283.1| (e_value=4e-101) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=3e-96) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT1G06890.2 (e_value=2e-97) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:2111728-2114038 REVERSE LENGTH=357;; (*ITAG) Solyc06g082500.2.1 (e_value=2e-101) genomic_reference:SL2.40ch06 gene_region:44579622-44585131 transcript_region:SL2.40ch06:44579622..44585131- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00007710g0010.1 protein AED:0.27 eAED:0.30 QI:161|0.90|0.75|1|0.81|0.83|12|0|463; (*GB) gi|351727457|ref|NP_001238441.1| (e_value=0.0) sialyltransferase-like [Glycine max];; (*SWP) sp|Q11205|SIA4B_RAT (e_value=2e-15) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Rattus norvegicus GN=St3gal2 PE=2 SV=1;; (*TAIR) AT3G48820.1 (e_value=0.0) | Symbols: | Glycosyltransferase family 29 (sialyltransferase) family protein | chr3:18100106-18102852 REVERSE LENGTH=440;; (*ITAG) Solyc03g097780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53556816-53563041 transcript_region:SL2.40ch03:53556816..53563041- go_terms:GO:0030173 functional_description:"Alpha-2 3-sialyltransferase (AHRD V1 *-*- Q702S2_TAKRU); contains Interpro domain(s) IPR001675 Glycosyl transferase, family 29 "; GO:0030173 NbS00007710g0011.1 protein AED:0.33 eAED:0.35 QI:229|0.81|0.83|1|1|1|12|334|393; (*GB) gi|356571620|ref|XP_003553974.1| (e_value=0.0) PREDICTED: V-type proton ATPase subunit C-like [Glycine max];; (*SWP) sp|Q9SDS7|VATC_ARATH (e_value=0.0) V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1;; (*TAIR) AT1G12840.1 (e_value=0.0) | Symbols: DET3, ATVHA-C | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375;; (*ITAG) Solyc03g097790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53564540-53576586 transcript_region:SL2.40ch03:53564540..53576586+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit C (AHRD V1 **** VATC_ARATH); contains Interpro domain(s) IPR004907 ATPase, V1 complex, subunit C "; GO:0005515,GO:0046961 NbS00002195g0011.1 protein AED:0.36 eAED:0.39 QI:0|0.66|0.71|1|0.5|0.57|7|65|266; (*GB) gi|225456087|ref|XP_002281066.1| (e_value=2e-119) PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera];; (*SWP) sp|Q949S9|SPF27_ARATH (e_value=1e-105) Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1;; (*TAIR) AT3G18165.1 (e_value=7e-107) | Symbols: MOS4 | modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253;; (*ITAG) Solyc03g119010.2.1 (e_value=4e-136) genomic_reference:SL2.40ch03 gene_region:61790538-61792835 transcript_region:SL2.40ch03:61790538..61792835- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SPF27 (AHRD V1 **-- D3PJ34_9MAXI); contains Interpro domain(s) IPR008409 Breast carcinoma amplified sequence 2 "; GO:0005515 NbS00002195g0013.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|88 NbS00002195g0012.1 protein AED:0.75 eAED:0.86 QI:0|0|0|0.25|0.33|0.5|4|0|177 NbS00002195g0119.1 protein AED:0.03 eAED:0.04 QI:0|1|0.66|1|0.5|0.66|3|0|468 NbS00002195g0123.1 protein AED:0.06 eAED:0.07 QI:0|0|0.5|1|0|0.5|2|0|438 NbS00002195g0122.1 protein AED:0.10 eAED:0.10 QI:105|0.71|0.62|1|0.57|0.62|8|246|489 NbS00002195g0117.1 protein AED:0.27 eAED:0.27 QI:232|0.94|0.83|1|0.94|0.88|18|1236|521 NbS00002195g0120.1 protein AED:0.18 eAED:0.18 QI:199|1|0.89|1|0.94|0.89|19|0|1237 NbS00009043g0010.1 protein AED:0.02 eAED:0.02 QI:0|0|0.33|1|0|0|3|0|350; (*GB) gi|255546993|ref|XP_002514554.1| (e_value=4e-160) zinc/iron transporter, putative [Ricinus communis];; (*SWP) sp|Q8W246|ZIP7_ARATH (e_value=2e-129) Zinc transporter 7 OS=Arabidopsis thaliana GN=ZIP7 PE=2 SV=1;; (*TAIR) AT2G04032.1 (e_value=1e-130) | Symbols: ZIP7 | zinc transporter 7 precursor | chr2:1289944-1291251 FORWARD LENGTH=365;; (*ITAG) Solyc02g069200.1.1 (e_value=1e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33736849-33738098 transcript_region:SL2.40ch02:33736849..33738098- go_terms:GO:0005381 functional_description:"Zinc transporter protein (AHRD V1 **** C0L438_9MAGN); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005381 NbS00009043g0007.1 protein AED:0.08 eAED:0.08 QI:245|1|1|1|0.5|0.55|9|560|594; (*GB) gi|255544928|ref|XP_002513525.1| (e_value=4e-111) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SV09|C3H46_ARATH (e_value=8e-75) Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1;; (*TAIR) AT3G51950.2 (e_value=6e-76) | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540;; (*ITAG) Solyc01g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2684942-2688779 transcript_region:SL2.40ch01:2684942..2688779+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 53 (AHRD V1 ***- C3H53_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00009043g0011.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0|2|0|332; (*GB) gi|119009|sp|P23433.1|E13D_TOBAC (e_value=0.0) RecName: Full=Glucan endo-1,3-beta-glucosidase; AltName: Full=(1-;; (*SWP) sp|P23433|E13D_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=6e-108) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2694719-2696395 transcript_region:SL2.40ch01:2694719..2696395- go_terms:GO:0005975 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00002848g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|398; (*GB) gi|13539578|emb|CAC35703.1| (e_value=0.0) photoperiod responsive protein [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9LXE3|PUB28_ARATH (e_value=2e-75) U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1;; (*TAIR) AT5G09800.1 (e_value=1e-76) | Symbols: | ARM repeat superfamily protein | chr5:3043123-3044352 REVERSE LENGTH=409;; (*ITAG) Solyc04g071030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:55475867-55477150 transcript_region:SL2.40ch04:55475867..55477150- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MRW3_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00041880g0005.1 protein AED:0.02 eAED:0.05 QI:9|0|0.5|1|0|0|2|0|175; (*GB) gi|225445846|ref|XP_002275706.1| (e_value=4e-73) PREDICTED: protein YIF1B [Vitis vinifera];; (*SWP) sp|Q5U3G6|YIF1B_DANRE (e_value=1e-12) Protein YIF1B OS=Danio rerio GN=yif1b PE=2 SV=2;; (*TAIR) AT1G30890.2 (e_value=4e-57) | Symbols: | Integral membrane HRF1 family protein | chr1:10994890-10995999 FORWARD LENGTH=269;; (*ITAG) Solyc07g005670.1.1 (e_value=7e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:551474-553674 transcript_region:SL2.40ch07:551474..553674- go_terms:GO:0005515 functional_description:"Transport protein YIF1 (AHRD V1 **-- C0SA11_PARBP); contains Interpro domain(s) IPR005578 Hrf1 "; GO:0005515 NbS00028965g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|0.75|1|1|4|0|723; (*GB) gi|337273025|gb|AEI70250.1| (e_value=0.0) auxin response factor 10 [Solanum lycopersicum];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc11g069500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51188434-51191569 transcript_region:SL2.40ch11:51188434..51191569- go_terms:GO:0046982,GO:0005516 functional_description:"Auxin response factor 16 (AHRD V1 ***- D9IVB4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046982,GO:0005516 NbS00005689g0010.1 protein AED:0.31 eAED:0.36 QI:166|0.25|0.22|0.77|1|1|9|0|320; (*GB) gi|133711814|gb|ABO36632.1| (e_value=3e-129) putative recA protein [Solanum lycopersicum];; (*SWP) sp|Q8RY99|RECAM_ARATH (e_value=3e-83) DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana GN=At3g10140 PE=2 SV=1;; (*TAIR) AT3G10140.1 (e_value=2e-84) | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-3137069 FORWARD LENGTH=389;; (*ITAG) Solyc10g079250.1.1 (e_value=5e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60144419-60149387 transcript_region:SL2.40ch10:60144419..60149387- go_terms:GO:0006259,GO:0017111,GO:0006281 functional_description:"Protein recA (AHRD V1 ***- Q0F3T6_9PROT); contains Interpro domain(s) IPR013765 RecA IPR003593 ATPase, AAA+ type, core "; GO:0006259,GO:0017111,GO:0006281 NbS00005689g0004.1 protein AED:0.04 eAED:0.04 QI:224|1|1|1|0.8|0.66|6|512|404; (*GB) gi|350537693|ref|NP_001233793.1| (e_value=0.0) calmodulin binding protein SUN-like [Solanum lycopersicum];; (*TAIR) AT5G03960.1 (e_value=7e-44) | Symbols: IQD12 | IQ-domain 12 | chr5:1068333-1069683 REVERSE LENGTH=403;; (*ITAG) Solyc10g079240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60140568-60142797 transcript_region:SL2.40ch10:60140568..60142797+ functional_description:"Calmodulin binding protein (AHRD V1 *--- B6T589_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00005689g0011.1 protein AED:0.33 eAED:0.41 QI:303|0.16|0.42|1|0.33|0.57|7|386|252; (*GB) gi|6735307|emb|CAB68134.1| (e_value=1e-27) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT3G57280.1 (e_value=2e-19) | Symbols: | Transmembrane proteins 14C | chr3:21193960-21195547 FORWARD LENGTH=226;; (*ITAG) Solyc10g079260.1.1 (e_value=6e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60150359-60154140 transcript_region:SL2.40ch10:60150359..60154140+ go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 *-*- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00019371g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|1|0.66|0.5|4|0|309; (*GB) gi|218308|dbj|BAA01992.1| (e_value=0.0) peroxidase [Nicotiana tabacum];; (*SWP) sp|P11965|PERX_TOBAC (e_value=0.0) Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G06720.1 (e_value=3e-142) | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335;; (*ITAG) Solyc01g006300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:888896-891747 transcript_region:SL2.40ch01:888896..891747- go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43774_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00002228g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|368; (*GB) gi|164458462|gb|ABY57638.1| (e_value=2e-32) RAP2.6-like protein [Solanum lycopersicum];; (*ITAG) Solyc12g056590.1.1 (e_value=2e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47906755-47908290 transcript_region:SL2.40ch12:47906755..47908290+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014981g0003.1 protein AED:0.31 eAED:0.46 QI:0|0|0|0.66|1|1|3|0|126; (*GB) gi|255570300|ref|XP_002526110.1| (e_value=7e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G29370.1 (e_value=2e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11278652-11278957 FORWARD LENGTH=101;; (*ITAG) Solyc02g088740.1.1 (e_value=3e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:45301650-45301943 transcript_region:SL2.40ch02:45301650..45301943+ functional_description:"Genomic DNA chromosome 5 TAC clone K3 (AHRD V1 ***- Q9FL84_ARATH)"; NbS00014981g0008.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|447; (*GB) gi|224141477|ref|XP_002324098.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SGA8|U83A1_ARATH (e_value=3e-133) UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana GN=UGT83A1 PE=2 SV=1;; (*TAIR) AT3G02100.1 (e_value=2e-134) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464;; (*ITAG) Solyc02g088750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45304319-45306589 transcript_region:SL2.40ch02:45304319..45306589- go_terms:GO:0008194 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **** Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008194 NbS00014981g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.76|0.78|1|1|1|14|263|431; (*GB) gi|225451717|ref|XP_002279575.1| (e_value=0.0) PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera];; (*SWP) sp|A8IR43|WDR12_CHLRE (e_value=2e-78) Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2;; (*TAIR) AT5G15550.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:5059051-5062003 REVERSE LENGTH=433;; (*ITAG) Solyc01g111030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89203372-89208190 transcript_region:SL2.40ch01:89203372..89208190+ go_terms:GO:0005515,GO:0000166 functional_description:"Ribosome biogenesis protein ytm1 (AHRD V1 **-- C8V8H1_EMENI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00005920g0003.1 protein AED:0.36 eAED:0.35 QI:0|0.57|0.37|0.75|0.28|0.25|8|154|418; (*GB) gi|359481937|ref|XP_003632695.1| (e_value=1e-91) PREDICTED: OTU domain-containing protein At3g57810-like [Vitis vinifera];; (*SWP) sp|Q8LBZ4|OTU_ARATH (e_value=3e-66) OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1;; (*TAIR) AT3G57810.3 (e_value=2e-67) | Symbols: | Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=317;; (*ITAG) Solyc11g007590.1.1 (e_value=3e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1850470-1852640 transcript_region:SL2.40ch11:1850470..1852640+ functional_description:"OTU domain-containing protein 4 (AHRD V1 *-*- OTUD4_HUMAN); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00031041g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|1|0.66|0.5|4|0|917; (*GB) gi|225430498|ref|XP_002283327.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SZ52|PP344_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1;; (*TAIR) AT4G31850.1 (e_value=0.0) | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112;; (*ITAG) Solyc04g015440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5628290-5631920 transcript_region:SL2.40ch04:5628290..5631920+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00046412g0002.1 protein AED:0.17 eAED:0.17 QI:990|0.75|1|1|0|0|5|162|109; (*GB) gi|13173434|gb|AAK14408.1| (e_value=9e-18) phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum];; (*SWP) sp|P55195|PUR6_VIGAC (e_value=5e-16) Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1;; (*TAIR) AT2G37690.1 (e_value=1e-17) | Symbols: | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative | chr2:15806111-15810240 FORWARD LENGTH=642;; (*ITAG) Solyc11g006340.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00032083g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|137 NbS00058842g0008.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.2|1|0.5|0.4|5|0|279; (*GB) gi|255545180|ref|XP_002513651.1| (e_value=2e-65) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=2e-56) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT4G01330.2 (e_value=1e-58) | Symbols: | Protein kinase superfamily protein | chr4:550723-552847 FORWARD LENGTH=480;; (*ITAG) Solyc03g007910.1.1 (e_value=1e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2424391-2426109 transcript_region:SL2.40ch03:2424391..2426109+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor-like serine/threonine kinase (AHRD V1 **** C6FF81_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00058842g0009.1 protein AED:0.40 eAED:0.45 QI:45|0|0.16|0.66|0.6|0.83|6|349|118; (*ITAG) Solyc03g007900.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:2416651-2422800 transcript_region:SL2.40ch03:2416651..2422800+ go_terms:GO:0016603 functional_description:"Glutamine cyclotransferase-like (AHRD V1 **** Q2V9A5_SOLTU); contains Interpro domain(s) IPR007788 Glutamine cyclotransferase "; GO:0016603 NbS00019812g0001.1 protein AED:0.27 eAED:0.28 QI:126|0.66|0.75|1|0|0|4|562|19 NbS00019812g0011.1 protein AED:0.00 eAED:0.00 QI:250|1|1|1|0.8|1|6|346|371; (*GB) gi|4519673|dbj|BAA75685.1| (e_value=0.0) WREBP-2 [Nicotiana tabacum];; (*SWP) sp|Q2V3L3|Y4634_ARATH (e_value=2e-141) Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1;; (*TAIR) AT4G06634.1 (e_value=1e-142) | Symbols: | zinc finger (C2H2 type) family protein | chr4:3764499-3766439 REVERSE LENGTH=387;; (*ITAG) Solyc03g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46676883-46685004 transcript_region:SL2.40ch03:46676883..46685004- go_terms:GO:0003700 functional_description:"Zinc finger transcription factor Gli3 (AHRD V1 *-** Q6U6Z9_DANRE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00019812g0007.1 protein AED:0.13 eAED:0.13 QI:205|1|1|1|1|1|3|329|161; (*GB) gi|225462336|ref|XP_002268778.1| (e_value=3e-63) PREDICTED: mediator of RNA polymerase II transcription subunit 22 [Vitis vinifera];; (*SWP) sp|Q54XB0|MED22_DICDI (e_value=4e-13) Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum GN=med22 PE=3 SV=1;; (*TAIR) AT1G16430.1 (e_value=6e-54) | Symbols: | Surfeit locus protein 5 subunit 22 of Mediator complex | chr1:5614632-5615397 FORWARD LENGTH=150;; (*ITAG) Solyc03g083300.2.1 (e_value=5e-83) genomic_reference:SL2.40ch03 gene_region:46674605-46676608 transcript_region:SL2.40ch03:46674605..46676608- go_terms:GO:0005515 functional_description:"Mediator of RNA polymerase II transcription subunit 22 (AHRD V1 ***- C1BXD5_ESOLU); contains Interpro domain(s) IPR009332 Mediator complex, subunit Med22 "; GO:0005515 NbS00000199g0017.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|3|37|260; (*GB) gi|224116510|ref|XP_002331915.1| (e_value=1e-124) aquaporin, MIP family, TIP subfamily [Populus trichocarpa];; (*SWP) sp|O22588|TIP32_ARATH (e_value=2e-119) Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1;; (*TAIR) AT1G17810.1 (e_value=1e-120) | Symbols: BETA-TIP | beta-tonoplast intrinsic protein | chr1:6130209-6131442 FORWARD LENGTH=267;; (*ITAG) Solyc03g019820.2.1 (e_value=1e-159) genomic_reference:SL2.40ch03 gene_region:6736503-6737841 transcript_region:SL2.40ch03:6736503..6737841- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00000199g0005.1 protein AED:0.17 eAED:0.17 QI:188|0.66|0.6|1|0.88|0.8|10|186|524; (*GB) gi|297737192|emb|CBI26393.3| (e_value=7e-111) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g019810.2.1 (e_value=1e-165) genomic_reference:SL2.40ch03 gene_region:6732732-6736409 transcript_region:SL2.40ch03:6732732..6736409+ functional_description:"Metallophosphoesterase (AHRD V1 **-- C5AIN9_BURGB)"; NbS00000199g0001.1 protein AED:0.10 eAED:0.17 QI:117|0.6|0.83|1|0.8|0.66|6|370|338; (*GB) gi|359489938|ref|XP_003633998.1| (e_value=7e-25) PREDICTED: uncharacterized protein LOC100855088 [Vitis vinifera];; (*TAIR) AT5G58210.4 (e_value=1e-14) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:23552427-23554045 FORWARD LENGTH=380;; (*ITAG) Solyc03g019840.2.1 (e_value=2e-97) genomic_reference:SL2.40ch03 gene_region:6748869-6754244 transcript_region:SL2.40ch03:6748869..6754244+ functional_description:"Plastid DNA-binding protein (Fragment) (AHRD V1 *-*- Q5DW99_BRANA)"; NbS00000199g0020.1 protein AED:0.09 eAED:0.12 QI:0|0|0|0.75|0|0|4|0|535; (*GB) gi|359489936|ref|XP_002267180.2| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Vitis vinifera];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=4e-70) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=3e-71) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc03g019830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6738921-6741895 transcript_region:SL2.40ch03:6738921..6741895- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00058178g0002.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|0.66|0.75|4|78|156; (*GB) gi|357509431|ref|XP_003625004.1| (e_value=3e-46) hypothetical protein MTR_7g089940 [Medicago truncatula];; (*TAIR) AT2G41200.1 (e_value=3e-34) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17171657-17172929 FORWARD LENGTH=161;; (*ITAG) Solyc03g058440.1.1 (e_value=7e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:21915390-21915587 transcript_region:SL2.40ch03:21915390..21915587+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016167g0004.1 protein AED:0.07 eAED:0.07 QI:69|1|1|1|1|1|5|191|242; (*GB) gi|356514256|ref|XP_003525822.1| (e_value=8e-118) PREDICTED: uncharacterized protein LOC100815424 [Glycine max];; (*TAIR) AT4G16510.1 (e_value=2e-110) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr4:9302816-9304869 FORWARD LENGTH=232;; (*ITAG) Solyc08g007410.2.1 (e_value=3e-130) genomic_reference:SL2.40ch08 gene_region:1974157-1978006 transcript_region:SL2.40ch08:1974157..1978006- functional_description:"YbaK/prolyl-tRNA synthetase-like protein (AHRD V1 ***- A8JCE5_CHLRE); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00035854g0012.1 protein AED:0.09 eAED:0.09 QI:143|1|0.85|1|0.83|0.71|7|0|260; (*GB) gi|225444782|ref|XP_002279950.1| (e_value=5e-151) PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera];; (*SWP) sp|Q9FJA6|RS33_ARATH (e_value=4e-145) 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1;; (*TAIR) AT5G35530.1 (e_value=3e-146) | Symbols: | Ribosomal protein S3 family protein | chr5:13710355-13712192 REVERSE LENGTH=248;; (*ITAG) Solyc08g061960.2.1 (e_value=1e-153) genomic_reference:SL2.40ch08 gene_region:47365396-47368389 transcript_region:SL2.40ch08:47365396..47368389+ go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TLR8_ELAGV); contains Interpro domain(s) IPR005703 Ribosomal protein S3, eukaryotic/archaeal "; GO:0003735 NbS00035854g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|224122446|ref|XP_002330483.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT2G06520.1 (e_value=3e-28) | Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116;; (*ITAG) Solyc05g025600.1.1 (e_value=1e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00035854g0013.1 protein AED:0.21 eAED:0.21 QI:274|1|1|1|1|1|5|237|223; (*GB) gi|255546017|ref|XP_002514068.1| (e_value=7e-122) Charged multivesicular body protein 2a, putative [Ricinus communis];; (*SWP) sp|Q9SKI2|VPS2A_ARATH (e_value=9e-116) Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2;; (*TAIR) AT2G06530.1 (e_value=7e-117) | Symbols: VPS2.1 | SNF7 family protein | chr2:2588740-2590285 REVERSE LENGTH=225;; (*ITAG) Solyc12g009060.1.1 (e_value=5e-130) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2350521-2354721 transcript_region:SL2.40ch12:2350521..2354721+ go_terms:GO:0019904 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6T4F7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0019904 NbS00035854g0007.1 protein AED:0.12 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|261; (*GB) gi|255546019|ref|XP_002514069.1| (e_value=9e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G13980.1 (e_value=1e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). | chr3:4619189-4620262 REVERSE LENGTH=357;; (*ITAG) Solyc07g041290.1.1 (e_value=2e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:49523053-49523982 transcript_region:SL2.40ch07:49523053..49523982+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00035854g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|110 NbS00058761g0006.1 protein AED:0.06 eAED:0.06 QI:311|1|1|1|0.8|0.66|6|486|745; (*GB) gi|302142475|emb|CBI19678.3| (e_value=8e-74) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g080200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62050965-62054788 transcript_region:SL2.40ch04:62050965..62054788+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058761g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|302142476|emb|CBI19679.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G18500.1 (e_value=8e-30) | Symbols: ATOFP7, OFP7 | ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315;; (*ITAG) Solyc04g080210.1.1 (e_value=4e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62055156-62055956 transcript_region:SL2.40ch04:62055156..62055956- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SHS0_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00000209g0007.1 protein AED:0.03 eAED:0.09 QI:0|1|0.66|1|1|1|3|275|1012; (*GB) gi|255575853|ref|XP_002528824.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G14310.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:8237137-8240324 REVERSE LENGTH=893;; (*ITAG) Solyc09g090340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65194502-65198979 transcript_region:SL2.40ch09:65194502..65198979+ functional_description:"Peroxisomal membrane protein-like (AHRD V1 ***- Q6KA75_ORYSJ)"; NbS00000209g0008.1 protein AED:0.34 eAED:0.36 QI:115|0.66|0.5|1|0.66|0.75|4|0|287; (*GB) gi|304273260|gb|ADM18295.1| (e_value=6e-164) harpin binding protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q9LW57|PAP6_ARATH (e_value=4e-102) Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1;; (*TAIR) AT3G23400.1 (e_value=3e-103) | Symbols: FIB4 | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:8376636-8378225 REVERSE LENGTH=284;; (*ITAG) Solyc09g090330.2.1 (e_value=5e-152) genomic_reference:SL2.40ch09 gene_region:65188896-65193572 transcript_region:SL2.40ch09:65188896..65193572- go_terms:GO:0009507 functional_description:"Harpin binding protein 1 (AHRD V1 **-- Q5QJB4_SOLLC); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00056847g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|264; (*GB) gi|255537221|ref|XP_002509677.1| (e_value=1e-143) Alpha-expansin 7 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LN94|EXPA7_ARATH (e_value=7e-125) Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1;; (*TAIR) AT1G12560.1 (e_value=6e-126) | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26, EXPA7 | expansin A7 | chr1:4276557-4277693 FORWARD LENGTH=262;; (*ITAG) Solyc08g080060.2.1 (e_value=3e-172) genomic_reference:SL2.40ch08 gene_region:60562889-60564536 transcript_region:SL2.40ch08:60562889..60564536+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00007631g0001.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|255550325|ref|XP_002516213.1| (e_value=1e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G20820.1 (e_value=3e-33) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7046911-7047294 REVERSE LENGTH=127;; (*ITAG) Solyc12g009290.1.1 (e_value=2e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:2564691-2565080 transcript_region:SL2.40ch12:2564691..2565080- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 *-*- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00053282g0005.1 protein AED:0.07 eAED:0.07 QI:123|1|1|1|1|1|8|234|461; (*GB) gi|225432860|ref|XP_002283908.1| (e_value=0.0) PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera];; (*TAIR) AT3G22990.1 (e_value=0.0) | Symbols: LFR | ARM repeat superfamily protein | chr3:8164015-8166145 FORWARD LENGTH=460;; (*ITAG) Solyc03g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:175431-182346 transcript_region:SL2.40ch03:175431..182346+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MXC7 (AHRD V1 ***- Q9LS90_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00053282g0006.1 protein AED:0.01 eAED:0.01 QI:133|1|1|1|1|1|2|134|523; (*GB) gi|225432862|ref|XP_002283935.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 11 [Vitis vinifera];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=0.0) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc03g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:183106-186591 transcript_region:SL2.40ch03:183106..186591- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00056842g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|335|135; (*GB) gi|225423704|ref|XP_002277425.1| (e_value=3e-68) PREDICTED: 60S ribosomal protein L27-3 isoform 1 [Vitis vinifera];; (*SWP) sp|P51419|RL273_ARATH (e_value=1e-64) 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2;; (*TAIR) AT4G15000.1 (e_value=7e-66) | Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135;; (*ITAG) Solyc07g043360.1.1 (e_value=1e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:54370663-54371070 transcript_region:SL2.40ch07:54370663..54371070- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "; GO:0003735 NbS00008430g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|398; (*GB) gi|225445352|ref|XP_002281621.1| (e_value=4e-162) PREDICTED: ornithine decarboxylase-like [Vitis vinifera];; (*SWP) sp|O22616|DCOR_SOLLC (e_value=3e-131) Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2;; (*TAIR) AT5G11880.1 (e_value=3e-24) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr5:3827806-3829942 REVERSE LENGTH=489;; (*ITAG) Solyc03g098310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54107768-54108961 transcript_region:SL2.40ch03:54107768..54108961+ go_terms:GO:0004586 functional_description:"Ornithine decarboxylase (AHRD V1 **** A2TBH8_THECC); contains Interpro domain(s) IPR002433 Ornithine decarboxylase "; GO:0004586 NbS00008430g0013.1 protein AED:0.20 eAED:0.20 QI:6|0.90|0.86|0.95|0.90|0.95|22|289|1122; (*GB) gi|84688908|gb|ABC61503.1| (e_value=0.0) AGO1-2, partial [Nicotiana benthamiana];; (*SWP) sp|Q7XSA2|AGO1B_ORYSJ (e_value=0.0) Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3;; (*TAIR) AT1G48410.1 (e_value=0.0) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048;; (*ITAG) Solyc06g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00008430g0005.1 protein AED:0.20 eAED:0.21 QI:0|0.66|0.61|1|1|1|13|0|641; (*GB) gi|147784773|emb|CAN66156.1| (e_value=0.0) hypothetical protein VITISV_032344 [Vitis vinifera];; (*SWP) sp|P49036|SUS2_MAIZE (e_value=0.0) Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1;; (*TAIR) AT4G02280.1 (e_value=0.0) | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4:995166-998719 FORWARD LENGTH=809;; (*ITAG) Solyc09g098590.2.1 (e_value=4e-180) genomic_reference:SL2.40ch09 gene_region:67652867-67658231 transcript_region:SL2.40ch09:67652867..67658231+ go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q84T18_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00008430g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.6|1|1|1|5|333|461; (*GB) gi|113205425|gb|AAU90342.2| (e_value=4e-167) Myb-like DNA-binding protein, putative [Solanum demissum];; (*SWP) sp|P92973|CCA1_ARATH (e_value=6e-26) Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1;; (*TAIR) AT1G18330.1 (e_value=4e-32) | Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307640 REVERSE LENGTH=346;; (*ITAG) Solyc03g098320.2.1 (e_value=1e-172) genomic_reference:SL2.40ch03 gene_region:54111610-54115887 transcript_region:SL2.40ch03:54111610..54115887- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 *--* A1DR85_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00008430g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|148; (*GB) gi|146336941|gb|ABQ23584.1| (e_value=2e-56) putative histone [Medicago truncatula];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-57) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=4e-58) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc11g007920.1.1 (e_value=2e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2160950-2161384 transcript_region:SL2.40ch11:2160950..2161384- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- A5BCC0_VITVI); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00027608g0003.1 protein AED:0.39 eAED:0.39 QI:19|0.66|0.25|1|1|1|4|0|150; (*ITAG) Solyc03g044840.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00027608g0006.1 protein AED:0.39 eAED:0.42 QI:176|0.75|0.6|1|0.5|0.2|5|0|110; (*GB) gi|297745506|emb|CBI40586.3| (e_value=2e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CQZ7|RPC10_MOUSE (e_value=9e-17) DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus GN=Polr3k PE=2 SV=1;; (*TAIR) AT4G07950.1 (e_value=2e-33) | Symbols: | DNA-directed RNA polymerase, subunit M, archaeal | chr4:4798910-4799510 FORWARD LENGTH=106;; (*ITAG) Solyc05g055890.2.1 (e_value=1e-67) genomic_reference:SL2.40ch05 gene_region:64494418-64496316 transcript_region:SL2.40ch05:64494418..64496316+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase subunit (AHRD V1 **** Q9ZQC0_ARATH); contains Interpro domain(s) IPR001222 Zinc finger, TFIIS-type "; GO:0003899 NbS00017407g0006.1 protein AED:0.05 eAED:0.05 QI:30|1|0.66|1|0.5|0.33|3|0|440; (*GB) gi|350537361|ref|NP_001234802.1| (e_value=1e-125) transcription factor WRKY72 [Solanum lycopersicum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=5e-56) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=4e-57) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc06g070990.2.1 (e_value=5e-107) genomic_reference:SL2.40ch06 gene_region:39985716-39990128 transcript_region:SL2.40ch06:39985716..39990128- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00017407g0004.1 protein AED:0.55 eAED:0.84 QI:0|0|0|0.8|1|1|5|0|149; (*GB) gi|8489877|gb|AAF75794.1|AF272710_1 (e_value=2e-52) putative 7-transmembrane G-protein-coupled receptor [Solanum chacoense];; (*TAIR) AT5G65280.1 (e_value=1e-38) | Symbols: GCL1 | GCR2-like 1 | chr5:26086129-26088069 REVERSE LENGTH=433;; (*ITAG) Solyc11g010170.1.1 (e_value=5e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3257971-3262718 transcript_region:SL2.40ch11:3257971..3262718- functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; NbS00057374g0007.1 protein AED:0.24 eAED:0.24 QI:114|0.82|0.88|0.94|0.64|0.72|18|551|673; (*GB) gi|350535118|ref|NP_001233921.1| (e_value=0.0) Xaa-Pro aminopeptidase 1 [Solanum lycopersicum];; (*SWP) sp|D1ZKF3|AMPP1_SORMK (e_value=1e-172) Probable Xaa-Pro aminopeptidase P OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=AMPP PE=3 SV=1;; (*TAIR) AT4G36760.1 (e_value=0.0) | Symbols: ATAPP1, APP1 | aminopeptidase P1 | chr4:17326688-17329979 FORWARD LENGTH=645;; (*ITAG) Solyc02g085640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43050620-43059519 transcript_region:SL2.40ch02:43050620..43059519+ go_terms:GO:0070006 functional_description:"Xaa-Pro aminopeptidase 1 (AHRD V1 ***- Q93X46_SOLLC); contains Interpro domain(s) IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site IPR000994 Peptidase M24, structural domain "; GO:0070006 NbS00057374g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|113; (*ITAG) Solyc10g078490.1.1 (e_value=2e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59623304-59626910 transcript_region:SL2.40ch10:59623304..59626910- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B0X7V5_CULQU); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00029191g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.5|1|0.8|0.83|6|0|406; (*GB) gi|357492259|ref|XP_003616418.1| (e_value=7e-34) hypothetical protein MTR_5g080030 [Medicago truncatula];; (*ITAG) Solyc01g100620.1.1 (e_value=2e-157) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82360185-82364004 transcript_region:SL2.40ch01:82360185..82364004+ go_terms:GO:0006508,GO:0005634,GO:0005622 functional_description:"Non-histone chromosomal protein 6 (AHRD V1 *-*- NHP6_CRYNE); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0006508,GO:0005634,GO:0005622 NbS00001792g0003.1 protein AED:0.01 eAED:0.01 QI:46|1|1|1|0.75|0.8|5|114|263; (*GB) gi|225424520|ref|XP_002281819.1| (e_value=3e-64) PREDICTED: uncharacterized protein LOC100242197 [Vitis vinifera];; (*TAIR) AT2G01990.1 (e_value=9e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:465197-466497 REVERSE LENGTH=213;; (*ITAG) Solyc01g005010.2.1 (e_value=2e-113) genomic_reference:SL2.40ch01 gene_region:23087-26021 transcript_region:SL2.40ch01:23087..26021+ functional_description:"Protein XRI1 (AHRD V1 *-*- XRI1_ARATH)"; NbS00001792g0002.1 protein AED:0.01 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|255561767|ref|XP_002521893.1| (e_value=1e-39) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G37870.1 (e_value=8e-36) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc03g079880.2.1 (e_value=2e-24) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00001792g0011.1 protein AED:0.34 eAED:0.37 QI:244|0.33|0.57|1|0|0.14|7|287|97; (*GB) gi|255570175|ref|XP_002526048.1| (e_value=4e-46) protein with unknown function [Ricinus communis];; (*SWP) sp|Q38922|RAB1B_ARATH (e_value=8e-43) Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1;; (*TAIR) AT4G35860.2 (e_value=1e-44) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988587 REVERSE LENGTH=165;; (*ITAG) Solyc02g093530.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00001792g0007.1 protein AED:0.58 eAED:0.70 QI:0|0|0|1|1|1|3|0|97 NbS00001792g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|88 NbS00012992g0009.1 protein AED:0.14 eAED:0.16 QI:465|0.8|0.72|1|0.7|0.72|11|1092|633; (*GB) gi|356525465|ref|XP_003531345.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290-like [Glycine max];; (*SWP) sp|C0LGT1|Y5129_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1;; (*TAIR) AT5G10290.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr5:3235462-3238171 REVERSE LENGTH=613;; (*ITAG) Solyc11g008960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3112545-3117930 transcript_region:SL2.40ch11:3112545..3117930- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00012992g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|3|0|537; (*GB) gi|225454898|ref|XP_002276015.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q3E9N1|PP359_ARATH (e_value=5e-135) Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2;; (*TAIR) AT4G39952.1 (e_value=3e-136) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:18527680-18530007 FORWARD LENGTH=775;; (*ITAG) Solyc11g008970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3132342-3134627 transcript_region:SL2.40ch11:3132342..3134627+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M977_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012992g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|88 NbC26175761g0001.1 protein AED:0.19 eAED:0.20 QI:355|0|0.5|1|0|0.5|2|0|100; (*GB) gi|307136217|gb|ADN34054.1| (e_value=1e-17) hypothetical protein [Cucumis melo subsp. melo];; (*TAIR) AT4G04630.1 (e_value=3e-19) | Symbols: | Protein of unknown function, DUF584 | chr4:2332163-2332669 REVERSE LENGTH=168;; (*ITAG) Solyc02g080580.1.1 (e_value=3e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39357037-39357504 transcript_region:SL2.40ch02:39357037..39357504+ functional_description:"Nuclear protein (AHRD V1 *-*- B6U7S5_MAIZE); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00046952g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|84; (*ITAG) Solyc12g062880.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00046952g0005.1 protein AED:0.07 eAED:0.07 QI:163|1|1|1|1|1|3|177|313; (*GB) gi|321149995|gb|ADW66145.1| (e_value=3e-117) gibberellin 20 oxidase 2 [Solanum nigrum];; (*SWP) sp|Q9C971|G3OX4_ARATH (e_value=8e-16) Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1;; (*TAIR) AT1G52790.1 (e_value=9e-90) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19662194-19663301 REVERSE LENGTH=310;; (*ITAG) Solyc12g042980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44025898-44029069 transcript_region:SL2.40ch12:44025898..44029069+ go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 ***- Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00046952g0007.1 protein AED:0.56 eAED:0.64 QI:0|0|0|0.5|0|0|2|0|168; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00029666g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|531; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=6e-146) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-130) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT1G51210.1 (e_value=1e-35) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:18987809-18989110 FORWARD LENGTH=433;; (*ITAG) Solyc10g079330.1.1 (e_value=3e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60214287-60216369 transcript_region:SL2.40ch10:60214287..60216369- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 *-*- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00029666g0103.1 protein AED:0.37 eAED:0.37 QI:212|1|1|1|0|0|4|567|55 NbS00030457g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|559; (*GB) gi|22001520|sp|P58905.1|AMT11_SOLLC (e_value=0.0) RecName: Full=Ammonium transporter 1 member 1; AltName: Full=LeAMT1;1;; (*SWP) sp|P58905|AMT11_SOLLC (e_value=0.0) Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1;; (*TAIR) AT4G13510.1 (e_value=0.0) | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter 1;1 | chr4:7858220-7859725 FORWARD LENGTH=501;; (*ITAG) Solyc09g090730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65513401-65514873 transcript_region:SL2.40ch09:65513401..65514873- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** Q09J80_9ROSI); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00003304g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|81; (*ITAG) Solyc11g068410.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00003304g0119.1 protein AED:0.30 eAED:0.30 QI:88|1|0.71|1|0.83|1|7|0|290 NbS00003304g0113.1 protein AED:0.63 eAED:0.63 QI:0|0|0.25|0.25|1|1|4|0|117 NbS00003304g0121.1 protein AED:0.17 eAED:0.18 QI:0|0.85|0.62|1|0.85|0.75|8|0|376 NbS00003304g0123.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.66|0.5|0.33|3|0|248 NbS00031203g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|6|0|317; (*ITAG) Solyc08g044310.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00031203g0003.1 protein AED:0.02 eAED:0.03 QI:36|0|0.5|1|0|1|2|126|457; (*GB) gi|225454058|ref|XP_002264761.1| (e_value=6e-166) PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera];; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=3e-56) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=2e-57) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g080920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72772977-72774597 transcript_region:SL2.40ch01:72772977..72774597+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- A8IXJ0_BRACM); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00031203g0009.1 protein AED:0.32 eAED:0.32 QI:165|0.6|0.5|1|0.6|0.66|6|0|330; (*GB) gi|255571151|ref|XP_002526526.1| (e_value=1e-153) carrier, putative [Ricinus communis];; (*SWP) sp|Q9LVM5|TTHL_ARATH (e_value=1e-109) Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1;; (*TAIR) AT5G58220.1 (e_value=1e-110) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=324;; (*ITAG) Solyc01g080940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72789735-72793615 transcript_region:SL2.40ch01:72789735..72793615+ go_terms:GO:0005515 functional_description:"5-hydroxyisourate hydrolase (AHRD V1 ***- B9SKJ6_RICCO); contains Interpro domain(s) IPR014306 Hydroxyisourate hydrolase "; GO:0005515 NbS00046004g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|0.6|0.83|6|0|682; (*GB) gi|224117524|ref|XP_002331696.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU64|CNG16_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1;; (*TAIR) AT3G48010.1 (e_value=0.0) | Symbols: ATCNGC16, CNGC16 | cyclic nucleotide-gated channel 16 | chr3:17721335-17724028 REVERSE LENGTH=705;; (*ITAG) Solyc03g114110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58189455-58195300 transcript_region:SL2.40ch03:58189455..58195300- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00002197g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|126; (*GB) gi|224091885|ref|XP_002309385.1| (e_value=5e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0C2|EGC1_ARATH (e_value=2e-52) Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana GN=EGC1 PE=2 SV=1;; (*TAIR) AT4G30380.1 (e_value=2e-53) | Symbols: | Barwin-related endoglucanase | chr4:14860486-14860994 FORWARD LENGTH=123;; (*ITAG) Solyc07g006390.1.1 (e_value=4e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1211878-1212553 transcript_region:SL2.40ch07:1211878..1212553- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN16_9ROSI); contains Interpro domain(s) IPR005132 Rare lipoprotein A "; NbS00002197g0002.1 protein AED:0.07 eAED:0.07 QI:41|1|0.5|1|1|1|2|0|215; (*GB) gi|58578272|emb|CAI48072.1| (e_value=2e-106) glutathione S-transferase/peroxidase [Capsicum chinense];; (*SWP) sp|P49332|GSTXC_TOBAC (e_value=5e-106) Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=5e-102) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc12g011300.1.1 (e_value=5e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4153362-4154489 transcript_region:SL2.40ch12:4153362..4154489+ functional_description:"Glutathione transferase (AHRD V1 ***- O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00010355g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|304|361; (*GB) gi|344176312|emb|CCC21110.1| (e_value=0.0) phantastica [Nicotiana benthamiana];; (*SWP) sp|O80931|AS1_ARATH (e_value=3e-137) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1;; (*TAIR) AT2G37630.1 (e_value=2e-138) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00006707g0002.1 protein AED:0.23 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|101; (*GB) gi|40287508|gb|AAR83868.1| (e_value=4e-55) 60S ribosomal protein L12 [Capsicum annuum];; (*SWP) sp|O50003|RL12_PRUAR (e_value=1e-54) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT2G37190.1 (e_value=4e-55) | Symbols: | Ribosomal protein L11 family protein | chr2:15619559-15620059 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=2e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00009716g0005.1 protein AED:0.51 eAED:0.51 QI:217|0.66|0.5|0.75|0.66|0.75|4|0|106 NbS00012952g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|156763850|emb|CAO99127.1| (e_value=4e-148) strictosidine synthase-like protein [Nicotiana tabacum];; (*SWP) sp|P94111|STS1_ARATH (e_value=8e-62) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=1e-132) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=9e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00012952g0005.1 protein AED:0.05 eAED:0.11 QI:226|0|0.5|1|1|1|2|0|172 NbS00012400g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|225433926|ref|XP_002268743.1| (e_value=8e-156) PREDICTED: uncharacterized protein LOC100252469 [Vitis vinifera];; (*TAIR) AT3G59520.1 (e_value=4e-144) | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 13 | chr3:21992054-21992863 FORWARD LENGTH=269;; (*ITAG) Solyc06g053370.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:32606651-32607466 transcript_region:SL2.40ch06:32606651..32607466- go_terms:GO:0016021 functional_description:"Rhomboid domain-containing protein (AHRD V1 ***- D2VRL6_NAEGR); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00012400g0002.1 protein AED:0.04 eAED:0.05 QI:63|0|0.5|1|0|0.5|2|0|315; (*GB) gi|225433928|ref|XP_002268865.1| (e_value=9e-150) PREDICTED: uncharacterized protein LOC100247353 [Vitis vinifera];; (*TAIR) AT1G06050.1 (e_value=2e-132) | Symbols: | Protein of unknown function (DUF1336) | chr1:1830726-1831667 REVERSE LENGTH=313;; (*ITAG) Solyc06g053360.2.1 (e_value=5e-159) genomic_reference:SL2.40ch06 gene_region:32601031-32603586 transcript_region:SL2.40ch06:32601031..32603586+ functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00012400g0011.1 protein AED:0.28 eAED:0.33 QI:60|0.33|0.5|1|0.66|0.5|4|327|442; (*GB) gi|255577193|ref|XP_002529479.1| (e_value=4e-117) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q04088|POF21_ARATH (e_value=6e-76) Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1;; (*TAIR) AT1G06070.1 (e_value=9e-96) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:1835201-1837116 REVERSE LENGTH=423;; (*ITAG) Solyc06g053350.2.1 (e_value=3e-147) genomic_reference:SL2.40ch06 gene_region:32588534-32595646 transcript_region:SL2.40ch06:32588534..32595646+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00037437g0002.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0|0.66|1|1|3|0|117; (*ITAG) Solyc10g074840.1.1 (e_value=5e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:57866678-57867705 transcript_region:SL2.40ch10:57866678..57867705- functional_description:"Unknown Protein (AHRD V1)"; NbS00034407g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.42|1|0.33|0.42|7|0|270; (*GB) gi|224115286|ref|XP_002332207.1| (e_value=9e-130) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56000.1 (e_value=9e-114) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr1:20944149-20946101 FORWARD LENGTH=384;; (*ITAG) Solyc10g005620.2.1 (e_value=6e-163) genomic_reference:SL2.40ch10 gene_region:500622-504454 transcript_region:SL2.40ch10:500622..504454- functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- C7RVE7_ACCPU); contains Interpro domain(s) IPR002937 Amine oxidase "; NbS00013333g0015.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|0|0.5|2|0|550; (*GB) gi|225434429|ref|XP_002277574.1| (e_value=2e-147) PREDICTED: cation/H(+) antiporter 3-like [Vitis vinifera];; (*SWP) sp|Q9FFB8|CHX3_ARATH (e_value=1e-120) Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1;; (*TAIR) AT5G22900.1 (e_value=9e-122) | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 | chr5:7657224-7659868 FORWARD LENGTH=822;; (*ITAG) Solyc05g052320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61733284-61737230 transcript_region:SL2.40ch05:61733284..61737230+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 3 (AHRD V1 **** CHX3_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00013333g0012.1 protein AED:0.22 eAED:0.22 QI:0|0|0.5|1|0|0.5|2|166|481; (*GB) gi|356499175|ref|XP_003518418.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100782905 [Glycine max];; (*TAIR) AT2G40390.1 (e_value=3e-176) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 75 Blast hits to 75 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:16867385-16868961 FORWARD LENGTH=496;; (*ITAG) Solyc10g018120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6625022-6627035 transcript_region:SL2.40ch10:6625022..6627035+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013333g0010.1 protein AED:0.24 eAED:0.24 QI:74|1|1|1|1|1|9|633|289; (*GB) gi|211906448|gb|ACJ11717.1| (e_value=4e-154) alpha-soluble NSF attachment protein [Gossypium hirsutum];; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=2e-155) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.1 (e_value=1e-131) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289;; (*ITAG) Solyc06g050770.2.1 (e_value=1e-174) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00013333g0016.1 protein AED:0.37 eAED:0.41 QI:0|0.5|0|1|0|0|3|0|258; (*GB) gi|255558140|ref|XP_002520098.1| (e_value=2e-27) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=2e-26) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=1e-27) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc05g052320.2.1 (e_value=6e-118) genomic_reference:SL2.40ch05 gene_region:61733284-61737230 transcript_region:SL2.40ch05:61733284..61737230+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 3 (AHRD V1 **** CHX3_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00013333g0013.1 protein AED:0.05 eAED:0.12 QI:50|1|0.66|1|0.5|0.33|3|0|196; (*GB) gi|12330698|gb|AAG52887.1|AF333386_1 (e_value=2e-64) beta-expansin-like protein [Nicotiana tabacum];; (*SWP) sp|Q7XT39|EXPB5_ORYSJ (e_value=3e-60) Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2;; (*TAIR) AT1G65681.1 (e_value=5e-60) | Symbols: EXPB6 | beta expansin 6 | chr1:24428875-24430670 FORWARD LENGTH=223;; (*ITAG) Solyc05g052330.1.1 (e_value=5e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61737797-61739729 transcript_region:SL2.40ch05:61737797..61739729- go_terms:GO:0005576 functional_description:"Expansin-b5 (AHRD V1 ***- D7LRS2_ARALY); contains Interpro domain(s) IPR014734 Pollen allergen, N-terminal "; GO:0005576 NbS00007747g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.2|0.8|0.25|0.4|5|0|371; (*GB) gi|225452918|ref|XP_002284104.1| (e_value=1e-65) PREDICTED: lamin-like protein [Vitis vinifera];; (*SWP) sp|Q39131|LAML_ARATH (e_value=7e-45) Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1;; (*TAIR) AT5G15350.1 (e_value=6e-46) | Symbols: ENODL17, AtENODL17 | early nodulin-like protein 17 | chr5:4985184-4986154 REVERSE LENGTH=172;; (*ITAG) Solyc02g088390.2.1 (e_value=4e-99) genomic_reference:SL2.40ch02 gene_region:45062928-45065725 transcript_region:SL2.40ch02:45062928..45065725- go_terms:GO:0005515 functional_description:"Blue copper-like protein (AHRD V1 *--- B8Y8A0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00034713g0001.1 protein AED:0.31 eAED:0.39 QI:0|0|0|0.66|0|0|3|0|185; (*GB) gi|225424337|ref|XP_002284829.1| (e_value=9e-36) PREDICTED: F-box protein SKIP28-like [Vitis vinifera];; (*SWP) sp|Q9ZU90|SKI28_ARATH (e_value=1e-27) F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1;; (*TAIR) AT2G01620.1 (e_value=7e-29) | Symbols: MEE11 | RNI-like superfamily protein | chr2:278204-279226 FORWARD LENGTH=292;; (*ITAG) Solyc01g005450.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:314777-317493 transcript_region:SL2.40ch01:314777..317493- go_terms:GO:0005515 functional_description:"F-box protein family-like protein (AHRD V1 ***- Q7EY67_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00059840g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0.5|2|269|130; (*GB) gi|12003400|gb|AAG43557.1|AF211539_1 (e_value=1e-19) Avr9/Cf-9 rapidly elicited protein 65 [Nicotiana tabacum];; (*ITAG) Solyc03g082370.1.1 (e_value=1e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45861072-45861341 transcript_region:SL2.40ch03:45861072..45861341- functional_description:"Avr9/Cf-9 rapidly elicited protein 65 (AHRD V1 ***- Q9FQZ0_TOBAC)"; NbS00059840g0003.1 protein AED:0.46 eAED:0.66 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|12003400|gb|AAG43557.1|AF211539_1 (e_value=2e-15) Avr9/Cf-9 rapidly elicited protein 65 [Nicotiana tabacum];; (*ITAG) Solyc03g082350.2.1 (e_value=1e-11) genomic_reference:SL2.40ch03 gene_region:45831935-45833664 transcript_region:SL2.40ch03:45831935..45833664- functional_description:"Avr9/Cf-9 rapidly elicited protein 65 (AHRD V1 *-*- Q9FQZ0_TOBAC)"; NbS00040669g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|255 NbS00040669g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.8|0.66|1|1|1|6|0|744; (*GB) gi|359477750|ref|XP_002285371.2| (e_value=0.0) PREDICTED: tetratricopeptide repeat protein 7B-like [Vitis vinifera];; (*TAIR) AT4G28600.1 (e_value=0.0) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc06g053530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32812075-32821638 transcript_region:SL2.40ch06:32812075..32821638- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein MPCBP (AHRD V1 **-* B6U2D5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00057786g0002.1 protein AED:0.14 eAED:0.18 QI:35|0|0|1|0|0|4|0|269; (*GB) gi|255556860|ref|XP_002519463.1| (e_value=8e-122) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|O04375|2A5A_ARATH (e_value=1e-120) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1;; (*TAIR) AT5G03470.1 (e_value=1e-121) | Symbols: ATB' ALPHA | Protein phosphatase 2A regulatory B subunit family protein | chr5:866795-868872 FORWARD LENGTH=495;; (*ITAG) Solyc10g083920.1.1 (e_value=6e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00001470g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|20149052|gb|AAM12781.1| (e_value=1e-67) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=3e-38) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=4e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00001470g0004.1 protein AED:0.23 eAED:0.23 QI:200|1|1|1|0|0.33|3|335|119; (*GB) gi|255565391|ref|XP_002523686.1| (e_value=2e-56) snf1-kinase beta subunit, plants, putative [Ricinus communis];; (*SWP) sp|Q9ZUU8|KINB3_ARATH (e_value=4e-46) SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1;; (*TAIR) AT2G28060.1 (e_value=3e-47) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr2:11950174-11950618 REVERSE LENGTH=114;; (*ITAG) Solyc06g010260.2.1 (e_value=1e-63) genomic_reference:SL2.40ch06 gene_region:5577524-5578199 transcript_region:SL2.40ch06:5577524..5578199- go_terms:GO:0005515 functional_description:"5'-AMP-activated protein kinase subunit beta-2 (AHRD V1 *-*- AAKB2_HUMAN); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0005515 NbS00020320g0004.1 protein AED:0.24 eAED:0.28 QI:114|1|0.5|1|1|1|2|0|331; (*GB) gi|225459071|ref|XP_002283770.1| (e_value=4e-50) PREDICTED: uncharacterized protein LOC100243767 [Vitis vinifera];; (*TAIR) AT4G24500.3 (e_value=2e-21) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:12658732-12660211 FORWARD LENGTH=319;; (*ITAG) Solyc12g087990.1.1 (e_value=3e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:61927966-61930100 transcript_region:SL2.40ch12:61927966..61930100- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7M8T6_ARALY)"; NbS00002969g0004.1 protein AED:0.19 eAED:0.22 QI:0|0.66|0.6|1|0.77|0.7|10|0|788; (*GB) gi|350537897|ref|NP_001234316.1| (e_value=0.0) auxin response factor 3 [Solanum lycopersicum];; (*SWP) sp|O23661|ARFC_ARATH (e_value=9e-169) Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2;; (*TAIR) AT2G33860.1 (e_value=7e-170) | Symbols: ETT, ARF3 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr2:14325444-14328613 REVERSE LENGTH=608;; (*ITAG) Solyc02g077560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37038134-37044666 transcript_region:SL2.40ch02:37038134..37044666+ go_terms:GO:0003700 functional_description:"Auxin response factor 3 (AHRD V1 **** Q2LAJ4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00015492g0004.1 protein AED:0.03 eAED:0.11 QI:0|0|0|1|1|1|2|0|418; (*GB) gi|225445384|ref|XP_002281699.1| (e_value=2e-142) PREDICTED: uncharacterized protein LOC100262914 [Vitis vinifera];; (*TAIR) AT5G19970.1 (e_value=3e-96) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6747550-6748641 FORWARD LENGTH=363;; (*ITAG) Solyc08g041700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:26772360-26773568 transcript_region:SL2.40ch08:26772360..26773568- functional_description:"F-box domain containing protein (AHRD V1 ***- B6TDX7_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00015492g0011.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|315; (*GB) gi|225445388|ref|XP_002284977.1| (e_value=5e-175) PREDICTED: GDP-mannose transporter GONST4 [Vitis vinifera];; (*SWP) sp|Q84L08|GONS4_ARATH (e_value=9e-148) GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1;; (*TAIR) AT5G19980.1 (e_value=7e-149) | Symbols: GONST4 | golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341;; (*ITAG) Solyc06g071950.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40714305-40715258 transcript_region:SL2.40ch06:40714305..40715258+ functional_description:"At5g19980 (Fragment) (AHRD V1 ***- Q84L08_ARATH)"; NbS00015492g0013.1 protein AED:0.24 eAED:0.24 QI:22|0.84|0.8|1|0.78|0.85|20|0|1027; (*GB) gi|296086648|emb|CBI32283.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8WVM7|STAG1_HUMAN (e_value=8e-62) Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3;; (*TAIR) AT2G47980.1 (e_value=0.0) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00015492g0014.1 protein AED:0.62 eAED:0.63 QI:0|0|0|0.33|0|0.33|3|0|95; (*ITAG) Solyc05g026510.2.1 (e_value=2e-19) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00004304g0002.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|171 NbS00004304g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc05g032660.2.1 (e_value=5e-27) genomic_reference:SL2.40ch05 gene_region:43162183-43177288 transcript_region:SL2.40ch05:43162183..43177288- go_terms:GO:0050327,GO:0034256 functional_description:"Dehydrogenase/ reductase 3 (AHRD V1 *--* Q3INM6_NATPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0050327,GO:0034256 NbS00012902g0012.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.85|0.66|0.14|7|0|1465; (*GB) gi|147827610|emb|CAN77456.1| (e_value=0.0) hypothetical protein VITISV_037411 [Vitis vinifera];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=2e-84) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=3e-80) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc09g075910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63042118-63044475 transcript_region:SL2.40ch09:63042118..63044475- go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00012902g0016.1 protein AED:0.27 eAED:0.33 QI:0|0.12|0|1|0.5|0.44|9|0|408; (*GB) gi|359477345|ref|XP_002278307.2| (e_value=2e-110) PREDICTED: primary amine oxidase-like [Vitis vinifera];; (*SWP) sp|P49252|AMO_LENCU (e_value=4e-61) Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3;; (*TAIR) AT1G31670.1 (e_value=3e-79) | Symbols: | Copper amine oxidase family protein | chr1:11337558-11341889 FORWARD LENGTH=741;; (*ITAG) Solyc09g075930.1.1 (e_value=7e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63048970-63051271 transcript_region:SL2.40ch09:63048970..63051271- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RSR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00061016g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|1|0.33|3|0|144; (*GB) gi|225459705|ref|XP_002284700.1| (e_value=2e-31) PREDICTED: wall-associated receptor kinase 1-like [Vitis vinifera];; (*SWP) sp|Q9LMN6|WAK4_ARATH (e_value=3e-26) Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1;; (*TAIR) AT1G21210.1 (e_value=2e-27) | Symbols: WAK4 | wall associated kinase 4 | chr1:7424653-7427041 FORWARD LENGTH=738;; (*ITAG) Solyc09g014740.2.1 (e_value=3e-37) genomic_reference:SL2.40ch09 gene_region:6812168-6816902 transcript_region:SL2.40ch09:6812168..6816902- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00024318g0010.1 protein AED:0.06 eAED:0.06 QI:157|1|1|1|1|1|4|284|977; (*GB) gi|225448966|ref|XP_002273083.1| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 3-like [Vitis vinifera];; (*SWP) sp|Q9CAE3|LDL3_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1;; (*TAIR) AT3G10390.1 (e_value=0.0) | Symbols: FLD | Flavin containing amine oxidoreductase family protein | chr3:3229293-3232345 FORWARD LENGTH=884;; (*ITAG) Solyc11g008320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00024318g0011.1 protein AED:0.10 eAED:0.11 QI:0|1|0.66|1|0|0|3|0|99; (*GB) gi|356555439|ref|XP_003546039.1| (e_value=3e-56) PREDICTED: uncharacterized protein LOC100781055 [Glycine max];; (*TAIR) AT1G15370.1 (e_value=1e-56) | Symbols: | SNARE-like superfamily protein | chr1:5287135-5288375 FORWARD LENGTH=147;; (*ITAG) Solyc11g008330.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2530730-2532334 transcript_region:SL2.40ch11:2530730..2532334+ go_terms:GO:0006810 functional_description:"Zeta2-COP (AHRD V1 **-- A8JHN4_CHLRE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00015847g0012.1 protein AED:0.02 eAED:0.02 QI:145|0.83|0.85|1|0.66|0.57|7|764|228; (*GB) gi|255576768|ref|XP_002529271.1| (e_value=4e-94) Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q84J78|SSBP_ARATH (e_value=2e-87) Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1;; (*TAIR) AT4G11060.1 (e_value=2e-88) | Symbols: MTSSB | mitochondrially targeted single-stranded DNA binding protein | chr4:6754820-6756230 REVERSE LENGTH=201;; (*ITAG) Solyc01g100080.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:81927750-81931586 transcript_region:SL2.40ch01:81927750..81931586+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding (AHRD V1 ***- Q2HW28_MEDTR); contains Interpro domain(s) IPR000424 Primosome PriB/single-strand DNA-binding "; GO:0003697 NbS00015847g0007.1 protein AED:0.24 eAED:0.24 QI:96|1|1|1|0.8|0.66|6|440|382; (*GB) gi|356576821|ref|XP_003556528.1| (e_value=2e-117) PREDICTED: uncharacterized protein LOC100794094 [Glycine max];; (*SWP) sp|Q5RDD2|PR38A_PONAB (e_value=3e-86) Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1;; (*TAIR) AT2G40650.1 (e_value=9e-113) | Symbols: | PRP38 family protein | chr2:16963588-16965596 REVERSE LENGTH=355;; (*ITAG) Solyc01g100060.2.1 (e_value=6e-135) genomic_reference:SL2.40ch01 gene_region:81921690-81925571 transcript_region:SL2.40ch01:81921690..81925571+ go_terms:GO:0005488 functional_description:"Pre-mRNA-splicing factor 38A (AHRD V1 *-*- B5X2T8_SALSA); contains Interpro domain(s) IPR005037 PRP38 "; GO:0005488 NbS00015847g0002.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|1|1|2|0|242; (*ITAG) Solyc01g100070.2.1 (e_value=6e-50) genomic_reference:SL2.40ch01 gene_region:81925800-81926888 transcript_region:SL2.40ch01:81925800..81926888- functional_description:"Unknown Protein (AHRD V1)"; NbS00028736g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|224088996|ref|XP_002308594.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|P59082|LFS_ALLCE (e_value=6e-13) Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1;; (*TAIR) AT4G32870.1 (e_value=2e-39) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:15862168-15862641 FORWARD LENGTH=157;; (*ITAG) Solyc08g066430.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52277048-52277563 transcript_region:SL2.40ch08:52277048..52277563+ functional_description:"Lachrymatory factor synthase (AHRD V1 ***- B6TW34_MAIZE); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00016465g0014.1 protein AED:0.13 eAED:0.13 QI:94|0.85|0.87|1|0.85|0.87|8|357|227; (*GB) gi|255538520|ref|XP_002510325.1| (e_value=1e-134) exocyst complex component sec3, putative [Ricinus communis];; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=1e-130) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.1 (e_value=1e-131) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=887;; (*ITAG) Solyc12g088990.1.1 (e_value=1e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62594071-62609745 transcript_region:SL2.40ch12:62594071..62609745- functional_description:"Exocyst complex component 1 (AHRD V1 ***- Q5PPR2_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00016465g0002.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.16|0.83|1|1|6|0|393; (*GB) gi|302142421|emb|CBI19624.3| (e_value=2e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84RR2|ARI2_ARATH (e_value=6e-83) Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1;; (*TAIR) AT2G16090.1 (e_value=4e-84) | Symbols: ARI2, ATARI2 | RING/U-box superfamily protein | chr2:6987367-6989822 REVERSE LENGTH=593;; (*ITAG) Solyc12g089000.1.1 (e_value=8e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62612008-62616194 transcript_region:SL2.40ch12:62612008..62616194- go_terms:GO:0008270 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00016465g0011.1 protein AED:0.29 eAED:0.29 QI:219|1|1|1|1|1|16|0|597; (*GB) gi|255538520|ref|XP_002510325.1| (e_value=0.0) exocyst complex component sec3, putative [Ricinus communis];; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=0.0) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.2 (e_value=0.0) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=888;; (*ITAG) Solyc12g088990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62594071-62609745 transcript_region:SL2.40ch12:62594071..62609745- functional_description:"Exocyst complex component 1 (AHRD V1 ***- Q5PPR2_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00022563g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.66|1|0.4|0.5|6|0|393; (*GB) gi|255548624|ref|XP_002515368.1| (e_value=4e-43) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P0DH85|REM10_ARATH (e_value=2e-27) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=1e-28) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc08g006240.1.1 (e_value=2e-120) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00022563g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|1762130|gb|AAB39827.1| (e_value=5e-62) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|C0Z361|CPNB3_ARATH (e_value=9e-63) Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1;; (*TAIR) AT5G56500.2 (e_value=6e-64) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:22874058-22876966 FORWARD LENGTH=597;; (*ITAG) Solyc01g028810.2.1 (e_value=8e-65) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbC25351981g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|297737828|emb|CBI27029.3| (e_value=3e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13360.1 (e_value=9e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc04g007130.1.1 (e_value=6e-69) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:845520-846077 transcript_region:SL2.40ch04:845520..846077- functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 ***- Q9LUA5_ARATH)"; NbS00030461g0010.1 protein AED:0.15 eAED:0.20 QI:0|0.62|0.58|0.94|0.93|0.94|17|0|1253; (*GB) gi|359490266|ref|XP_002265664.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252544 [Vitis vinifera];; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=1e-98) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT5G62310.1 (e_value=0.0) | Symbols: IRE | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr5:25023405-25028414 FORWARD LENGTH=1168;; (*ITAG) Solyc03g083590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47091306-47102124 transcript_region:SL2.40ch03:47091306..47102124+ go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00030461g0011.1 protein AED:0.31 eAED:0.39 QI:308|0.71|0.62|1|0.42|0.37|8|0|246; (*GB) gi|225466049|ref|XP_002263160.1| (e_value=1e-79) PREDICTED: adenylate kinase [Vitis vinifera];; (*SWP) sp|O24464|KAD_PRUAR (e_value=1e-78) Adenylate kinase OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT4G25280.1 (e_value=4e-77) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12939068-12940723 REVERSE LENGTH=249;; (*ITAG) Solyc03g083610.2.1 (e_value=1e-124) genomic_reference:SL2.40ch03 gene_region:47110164-47113688 transcript_region:SL2.40ch03:47110164..47113688+ go_terms:GO:0009041 functional_description:"Adenylate kinase (AHRD V1 **** B6TE58_MAIZE); contains Interpro domain(s) IPR006266 UMP-CMP kinase "; GO:0009041 NbS00014677g0009.1 protein AED:0.79 eAED:0.79 QI:0|0|0.5|0.5|1|1|2|0|71 NbS00014677g0008.1 protein AED:0.44 eAED:0.46 QI:0|0.5|0.33|1|0.5|0.66|3|0|68; (*TAIR) AT5G48545.1 (e_value=6e-14) | Symbols: HINT3 | histidine triad nucleotide-binding 3 | chr5:19676228-19677945 FORWARD LENGTH=197;; (*ITAG) Solyc06g007590.2.1 (e_value=9e-15) genomic_reference:SL2.40ch06 gene_region:1584515-1597766 transcript_region:SL2.40ch06:1584515..1597766- go_terms:GO:0043530 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B9LF38_CHLSY); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0043530 NbS00014677g0007.1 protein AED:0.53 eAED:0.68 QI:0|0|0|1|0|0.5|2|0|81; (*GB) gi|359497272|ref|XP_003635468.1| (e_value=4e-16) PREDICTED: uncharacterized protein LOC100852448, partial [Vitis vinifera];; (*ITAG) Solyc06g007590.2.1 (e_value=6e-18) genomic_reference:SL2.40ch06 gene_region:1584515-1597766 transcript_region:SL2.40ch06:1584515..1597766- go_terms:GO:0043530 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B9LF38_CHLSY); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0043530 NbS00017725g0006.1 protein AED:0.10 eAED:0.10 QI:164|1|0.66|1|1|1|6|284|289; (*GB) gi|77999263|gb|ABB16978.1| (e_value=9e-152) salt tolerance protein 5-like protein [Solanum tuberosum];; (*SWP) sp|O35685|NUDC_MOUSE (e_value=1e-65) Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1;; (*TAIR) AT5G53400.1 (e_value=1e-107) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc03g083390.2.1 (e_value=2e-149) genomic_reference:SL2.40ch03 gene_region:46783589-46788273 transcript_region:SL2.40ch03:46783589..46788273+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00030991g0007.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|417; (*GB) gi|12003394|gb|AAG43554.1|AF211536_1 (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum];; (*SWP) sp|Q9LHD2|GATLA_ARATH (e_value=4e-164) Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1;; (*TAIR) AT3G28340.1 (e_value=3e-165) | Symbols: GATL10 | galacturonosyltransferase-like 10 | chr3:10589396-10590493 REVERSE LENGTH=365;; (*ITAG) Solyc02g087350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44354006-44355106 transcript_region:SL2.40ch02:44354006..44355106- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00030991g0005.1 protein AED:0.17 eAED:0.17 QI:84|0.81|0.73|0.91|0.86|0.82|23|680|1308; (*GB) gi|359488765|ref|XP_002281791.2| (e_value=0.0) PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera];; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=0.0) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g087360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00006085g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|224129812|ref|XP_002320677.1| (e_value=1e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g077570.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:60128091-60128438 transcript_region:SL2.40ch04:60128091..60128438- functional_description:"Unknown Protein (AHRD V1)"; NbS00006085g0010.1 protein AED:0.09 eAED:0.11 QI:0|0.25|0|1|0|0|5|0|513; (*GB) gi|255555323|ref|XP_002518698.1| (e_value=2e-139) copper ion binding protein, putative [Ricinus communis];; (*TAIR) AT3G19430.1 (e_value=8e-128) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc11g073150.1.1 (e_value=3e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53307462-53308534 transcript_region:SL2.40ch11:53307462..53308534+ go_terms:GO:0016042 functional_description:"Root cap protein 3 (Fragment) (AHRD V1 ***- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; GO:0016042 NbS00006085g0007.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|1|1|2|0|114; (*ITAG) Solyc06g053700.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33039569-33039916 transcript_region:SL2.40ch06:33039569..33039916+ functional_description:"At1g04330 (Fragment) (AHRD V1 ***- B0FVZ1_ARATH)"; NbS00006085g0008.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|127 NbS00009267g0002.1 protein AED:0.10 eAED:0.25 QI:86|0|0|1|1|0.5|2|0|141; (*GB) gi|224114473|ref|XP_002316770.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT4G03620.1 (e_value=2e-31) | Symbols: | myosin heavy chain-related | chr4:1607040-1608665 REVERSE LENGTH=342;; (*ITAG) Solyc02g021450.2.1 (e_value=4e-51) genomic_reference:SL2.40ch02 gene_region:13460341-13461928 transcript_region:SL2.40ch02:13460341..13461928+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006717g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|385; (*GB) gi|142942397|gb|ABO92972.1| (e_value=0.0) no apical meristem (NAM)-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=1e-106) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT1G26870.1 (e_value=1e-107) | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425;; (*ITAG) Solyc05g007550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2096116-2098418 transcript_region:SL2.40ch05:2096116..2098418+ go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00027131g0001.1 protein AED:0.00 eAED:0.00 QI:139|1|1|1|0.66|0.5|4|366|88; (*GB) gi|351725771|ref|NP_001237104.1| (e_value=2e-48) cyclin-dependent kinases regulatory subunit [Glycine max];; (*SWP) sp|Q6PS57|CKS1_ORYSJ (e_value=7e-49) Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1;; (*TAIR) AT2G27970.1 (e_value=6e-49) | Symbols: CKS2 | CDK-subunit 2 | chr2:11912460-11913112 REVERSE LENGTH=83; NbS00015299g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc04g005000.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2659-2883 transcript_region:SL2.40ch04:2659..2883- functional_description:"Unknown Protein (AHRD V1)"; NbS00015299g0010.1 protein AED:0.39 eAED:0.39 QI:546|1|0.5|1|1|1|2|0|113; (*GB) gi|147838004|emb|CAN69383.1| (e_value=2e-30) hypothetical protein VITISV_017964 [Vitis vinifera];; (*TAIR) AT5G08200.1 (e_value=3e-30) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:2638385-2640508 FORWARD LENGTH=409;; (*ITAG) Solyc11g039960.1.1 (e_value=3e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:27997290-28001433 transcript_region:SL2.40ch11:27997290..28001433- go_terms:GO:0016998 functional_description:"LysM domain containing protein expressed (AHRD V1 ***- Q7XD97_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00015299g0011.1 protein AED:0.46 eAED:0.60 QI:0|0|0|1|0|0.33|3|0|118 NbS00011680g0004.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.6|0.75|0.6|5|0|716; (*GB) gi|225457590|ref|XP_002273276.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera];; (*SWP) sp|Q9FII2|FK117_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1;; (*TAIR) AT5G42350.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:16932106-16933797 FORWARD LENGTH=563;; (*ITAG) Solyc04g082580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63811989-63815217 transcript_region:SL2.40ch04:63811989..63815217- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTF5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00038597g0011.1 protein AED:0.05 eAED:0.05 QI:150|1|1|1|0|0|2|331|155; (*GB) gi|224124708|ref|XP_002319402.1| (e_value=9e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT1G06980.1 (e_value=3e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2143248-2143757 REVERSE LENGTH=169;; (*ITAG) Solyc06g007370.1.1 (e_value=3e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1406687-1407166 transcript_region:SL2.40ch06:1406687..1407166+ functional_description:"Os04g0630700 protein (Fragment) (AHRD V1 *-*- Q0J9U7_ORYSJ)"; NbS00038597g0006.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|111; (*GB) gi|57013977|ref|YP_173449.1| (e_value=2e-43) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00038597g0009.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|160; (*GB) gi|359478513|ref|XP_002277533.2| (e_value=7e-46) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|O22920|CHX13_ARATH (e_value=7e-20) Cation/H(+) symporter 13 OS=Arabidopsis thaliana GN=CHX13 PE=1 SV=1;; (*TAIR) AT2G30240.1 (e_value=6e-21) | Symbols: ATCHX13, CHX13 | Cation/hydrogen exchanger family protein | chr2:12899907-12902779 REVERSE LENGTH=831;; (*ITAG) Solyc08g078880.2.1 (e_value=3e-17) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00038597g0010.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|0|0|3|0|364; (*GB) gi|297745810|emb|CBI15866.3| (e_value=7e-88) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01710.1 (e_value=8e-80) | Symbols: | methyltransferases | chr5:263709-265250 REVERSE LENGTH=513;; (*ITAG) Solyc06g007380.1.1 (e_value=5e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1412600-1414042 transcript_region:SL2.40ch06:1412600..1414042- functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00060770g0005.1 protein AED:0.23 eAED:0.23 QI:329|0.71|0.62|1|0.85|1|8|0|439; (*GB) gi|365222866|gb|AEW69785.1| (e_value=0.0) Hop-interacting protein THI012 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=0.0) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=0.0) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc11g066020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48740653-48743035 transcript_region:SL2.40ch11:48740653..48743035- go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00016924g0013.1 protein AED:0.23 eAED:0.24 QI:0|0.55|0.2|1|0.44|0.7|10|0|286; (*GB) gi|6692104|gb|AAF24569.1|AC007764_11 (e_value=1e-127) F22C12.24 [Arabidopsis thaliana];; (*SWP) sp|Q9M4A1|SPO12_ARATH (e_value=7e-120) Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1;; (*TAIR) AT1G63990.1 (e_value=6e-121) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383;; (*ITAG) Solyc08g081590.1.1 (e_value=1e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61763619-61765821 transcript_region:SL2.40ch08:61763619..61765821- go_terms:GO:0003918 functional_description:"DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** D3S4S1_METSF); contains Interpro domain(s) IPR002815 Spo11/DNA topoisomerase VI, subunit A "; GO:0003918 NbS00016924g0011.1 protein AED:0.23 eAED:0.36 QI:0|0.5|0.33|1|0.5|1|3|0|99; (*GB) gi|225426148|ref|XP_002278358.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100241601 [Vitis vinifera];; (*TAIR) AT5G41560.1 (e_value=4e-22) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16621427-16622619 REVERSE LENGTH=101;; (*ITAG) Solyc08g008120.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:2587918-2593071 transcript_region:SL2.40ch08:2587918..2593071- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; NbS00016924g0009.1 protein AED:0.22 eAED:0.23 QI:0|0.9|0.90|1|1|1|11|437|366; (*GB) gi|225426146|ref|XP_002278325.1| (e_value=9e-135) PREDICTED: uncharacterized protein LOC100246733 isoform 1 [Vitis vinifera];; (*TAIR) AT1G63980.2 (e_value=9e-107) | Symbols: | D111/G-patch domain-containing protein | chr1:23740646-23743054 FORWARD LENGTH=389;; (*ITAG) Solyc08g081580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61757506-61762501 transcript_region:SL2.40ch08:61757506..61762501+ go_terms:GO:0005622 functional_description:"Pin2-interacting protein X1 (AHRD V1 *--- C1BXV6_ESOLU); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00027775g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|474; (*GB) gi|225443484|ref|XP_002270251.1| (e_value=0.0) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=1e-24) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT1G32910.1 (e_value=5e-165) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:11925426-11926908 FORWARD LENGTH=464;; (*ITAG) Solyc02g079490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38599996-38602372 transcript_region:SL2.40ch02:38599996..38602372- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (AHRD V1 **-* D1GJ94_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00000085g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|745; (*GB) gi|296087885|emb|CBI35168.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZTP3|EIN4_ARATH (e_value=3e-127) Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1;; (*TAIR) AT3G04580.2 (e_value=2e-128) | Symbols: EIN4 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:1235576-1237965 REVERSE LENGTH=766;; (*ITAG) Solyc05g055070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64005873-64009896 transcript_region:SL2.40ch05:64005873..64009896- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** C0ILN8_COFCA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0004872,GO:0051740,GO:0004696 NbS00000085g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.6|0.8|0.75|0.6|5|574|152; (*ITAG) Solyc01g073870.2.1 (e_value=3e-19) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00029767g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|4|0|302; (*ITAG) Solyc03g046190.1.1 (e_value=7e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15877303-15877731 transcript_region:SL2.40ch03:15877303..15877731- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00014575g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|198; (*GB) gi|82623367|gb|ABB87098.1| (e_value=9e-79) hypothetical protein [Solanum tuberosum];; (*TAIR) AT2G27830.1 (e_value=1e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22758.1); Has 131 Blast hits to 131 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11860734-11861306 FORWARD LENGTH=190;; (*ITAG) Solyc11g066860.1.1 (e_value=4e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49742461-49743136 transcript_region:SL2.40ch11:49742461..49743136- functional_description:"Os02g0448600 protein (Fragment) (AHRD V1 *--- Q0E1G8_ORYSJ)"; NbS00014575g0005.1 protein AED:0.20 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|251; (*ITAG) Solyc06g074550.2.1 (e_value=7e-34) genomic_reference:SL2.40ch06 gene_region:42521995-42525107 transcript_region:SL2.40ch06:42521995..42525107+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014575g0011.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|101; (*GB) gi|297739533|emb|CBI29715.3| (e_value=2e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G80160.2 (e_value=5e-15) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151280-30151930 FORWARD LENGTH=141;; (*ITAG) Solyc01g103590.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00022531g0003.1 protein AED:0.02 eAED:0.02 QI:240|1|1|1|1|1|2|185|250; (*GB) gi|356559913|ref|XP_003548240.1| (e_value=6e-129) PREDICTED: ras-related protein RABA3-like [Glycine max];; (*SWP) sp|Q9LNK1|RABA3_ARATH (e_value=1e-109) Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1;; (*TAIR) AT1G01200.1 (e_value=8e-111) | Symbols: ATRABA3, ATRAB-A3, RABA3 | RAB GTPase homolog A3 | chr1:86715-88145 REVERSE LENGTH=237;; (*ITAG) Solyc01g096220.2.1 (e_value=4e-156) genomic_reference:SL2.40ch01 gene_region:79075516-79077682 transcript_region:SL2.40ch01:79075516..79077682+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00000329g0017.1 protein AED:0.29 eAED:0.29 QI:64|1|1|1|0.42|0.62|8|506|384; (*GB) gi|302143284|emb|CBI21845.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03687.1 (e_value=2e-154) | Symbols: | DTW domain-containing protein | chr1:918308-920306 FORWARD LENGTH=381;; (*ITAG) Solyc07g054070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59780797-59788230 transcript_region:SL2.40ch07:59780797..59788230- functional_description:"DTW domain-containing protein-like (AHRD V1 *-*- Q5Z9X7_ORYSJ); contains Interpro domain(s) IPR005636 DTW "; NbS00000329g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|282; (*GB) gi|225446349|ref|XP_002274029.1| (e_value=3e-121) PREDICTED: riboflavin synthase alpha chain [Vitis vinifera];; (*SWP) sp|Q9Y7P0|RISA_SCHPO (e_value=2e-62) Riboflavin synthase alpha chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rib5 PE=1 SV=1;; (*TAIR) AT2G20690.1 (e_value=3e-107) | Symbols: | lumazine-binding family protein | chr2:8923342-8924621 FORWARD LENGTH=271;; (*ITAG) Solyc07g054190.2.1 (e_value=2e-159) genomic_reference:SL2.40ch07 gene_region:59875898-59878620 transcript_region:SL2.40ch07:59875898..59878620- go_terms:GO:0004746 functional_description:"Riboflavin synthase alpha subunit (AHRD V1 **** A5URX5_ROSS1); contains Interpro domain(s) IPR001783 Lumazine-binding protein "; GO:0004746 NbS00000329g0018.1 protein AED:0.64 eAED:0.75 QI:0|0|0|0.37|0.42|0.5|8|0|313; (*ITAG) Solyc02g032530.2.1 (e_value=1e-18) genomic_reference:SL2.40ch02 gene_region:19268572-19274589 transcript_region:SL2.40ch02:19268572..19274589+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00000329g0019.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.25|1|1|4|0|214 NbS00035897g0008.1 protein AED:0.14 eAED:0.14 QI:368|1|1|1|0|0.33|6|319|707; (*GB) gi|224134268|ref|XP_002327797.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23225|PUB5_ARATH (e_value=9e-101) U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3;; (*TAIR) AT4G36550.1 (e_value=7e-102) | Symbols: | ARM repeat superfamily protein | chr4:17245400-17247926 REVERSE LENGTH=718;; (*ITAG) Solyc02g085140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42693111-42697063 transcript_region:SL2.40ch02:42693111..42697063- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- Q1EPA8_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00035897g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.5|1|0.4|0.16|6|439|488; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=0.0) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=6e-166) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g085130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42689477-42691624 transcript_region:SL2.40ch02:42689477..42691624+ go_terms:GO:0051015 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0051015 NbS00005161g0008.1 protein AED:0.25 eAED:0.25 QI:74|0.75|0.6|1|1|1|5|393|413; (*GB) gi|255586469|ref|XP_002533878.1| (e_value=2e-167) protein disulfide isomerase, putative [Ricinus communis];; (*SWP) sp|Q94F09|PDI52_ARATH (e_value=3e-149) Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=2 SV=1;; (*TAIR) AT1G35620.1 (e_value=2e-150) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440;; (*ITAG) Solyc11g019920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9781305-9788278 transcript_region:SL2.40ch11:9781305..9788278+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00005161g0007.1 protein AED:0.34 eAED:0.34 QI:672|0.6|0.66|1|0|0.16|6|0|141; (*GB) gi|224146378|ref|XP_002325986.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71980.1 (e_value=2e-22) | Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448;; (*ITAG) Solyc11g019930.1.1 (e_value=1e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9789425-9802526 transcript_region:SL2.40ch11:9789425..9802526- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- B5X4J4_SALSA); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0008270 NbS00031054g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|0.75|1|0.75|4|0|137; (*GB) gi|224128974|ref|XP_002320469.1| (e_value=6e-72) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|P79051|RHP16_SCHPO (e_value=7e-43) ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=2 SV=2;; (*TAIR) AT1G05120.1 (e_value=1e-63) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc07g052100.2.1 (e_value=5e-72) genomic_reference:SL2.40ch07 gene_region:57966277-57974077 transcript_region:SL2.40ch07:57966277..57974077+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00020617g0017.1 protein AED:0.22 eAED:0.22 QI:0|0.2|0.27|0.90|0.7|0.45|11|608|809; (*GB) gi|225461363|ref|XP_002281949.1| (e_value=0.0) PREDICTED: ABC transporter G family member 9-like [Vitis vinifera];; (*SWP) sp|Q9SZR9|AB9G_ARATH (e_value=0.0) ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=2;; (*TAIR) AT4G27420.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr4:13712434-13714797 REVERSE LENGTH=638;; (*ITAG) Solyc12g013630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4473107-4475957 transcript_region:SL2.40ch12:4473107..4475957- go_terms:GO:0016020,GO:0031177,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 9 (AHRD V1 ***- AB9G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0031177,GO:0017111,GO:0016887 NbS00020617g0016.1 protein AED:0.36 eAED:0.45 QI:0|0|0|0.5|1|1|4|0|157; (*GB) gi|111073731|dbj|BAF02554.1| (e_value=2e-67) hypothetical protein [Nicotiana benthamiana]; NbS00020617g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.5|0.66|3|666|329; (*GB) gi|225461347|ref|XP_002281902.1| (e_value=0.0) PREDICTED: PAP-specific phosphatase HAL2-like [Vitis vinifera];; (*SWP) sp|Q38945|DPNPH_ARATH (e_value=4e-158) PAP-specific phosphatase HAL2-like OS=Arabidopsis thaliana GN=AHL PE=2 SV=1;; (*TAIR) AT5G54390.1 (e_value=3e-159) | Symbols: AHL, ATAHL, HL | HAL2-like | chr5:22086133-22087586 FORWARD LENGTH=373;; (*ITAG) Solyc12g013560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4405558-4410928 transcript_region:SL2.40ch12:4405558..4410928+ go_terms:GO:0006790,GO:0004437 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 ***- A8HQG9_CHLRE); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0006790,GO:0004437 NbS00020617g0013.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|224135111|ref|XP_002321986.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24314.1 (e_value=3e-31) | Symbols: PDE225, PTAC7 | plastid transcriptionally active7 | chr5:8277750-8279099 FORWARD LENGTH=161;; (*ITAG) Solyc03g082970.2.1 (e_value=9e-49) genomic_reference:SL2.40ch03 gene_region:46366017-46370485 transcript_region:SL2.40ch03:46366017..46370485- functional_description:"PDE225/PTAC7 (AHRD V1 ***- D7M329_ARALY)"; NbS00020617g0018.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.76|1|1|1|13|1479|527; (*GB) gi|224128406|ref|XP_002329154.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P82869|CYP37_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3;; (*TAIR) AT3G15520.1 (e_value=0.0) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:5249739-5252432 REVERSE LENGTH=466;; (*ITAG) Solyc12g013580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4417408-4423280 transcript_region:SL2.40ch12:4417408..4423280+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 ***- A8INE5_CHLRE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00011170g0002.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|0|0|3|442|85; (*GB) gi|255572577|ref|XP_002527222.1| (e_value=3e-42) Protein BRICK1, putative [Ricinus communis];; (*SWP) sp|Q94JY4|BRK1_ARATH (e_value=5e-43) Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1;; (*TAIR) AT2G22640.1 (e_value=4e-44) | Symbols: HSPC300, BRK1, ATBRK1 | BRICK1, putative | chr2:9623283-9623938 FORWARD LENGTH=85;; (*ITAG) Solyc03g043720.2.1 (e_value=4e-49) genomic_reference:SL2.40ch03 gene_region:11205072-11205818 transcript_region:SL2.40ch03:11205072..11205818+ go_terms:GO:0042802 functional_description:"BRICK1 (AHRD V1 ***- A9YWR8_MEDTR)"; GO:0042802 NbS00035762g0007.1 protein AED:0.39 eAED:0.43 QI:0|1|0.66|1|1|1|3|0|169; (*GB) gi|359476594|ref|XP_003631861.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100853825 [Vitis vinifera];; (*TAIR) AT2G23755.1 (e_value=2e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10103375-10103985 REVERSE LENGTH=150;; (*ITAG) Solyc02g089960.2.1 (e_value=4e-65) genomic_reference:SL2.40ch02 gene_region:46222165-46223177 transcript_region:SL2.40ch02:46222165..46223177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035762g0008.1 protein AED:0.08 eAED:0.08 QI:15|0.9|0.72|1|0.7|0.63|11|331|1539; (*GB) gi|359476736|ref|XP_002269759.2| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Vitis vinifera];; (*SWP) sp|O64827|SUVR5_ARATH (e_value=0.0) Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3;; (*TAIR) AT2G23740.2 (e_value=0.0) | Symbols: | nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding | chr2:10098213-10103229 FORWARD LENGTH=1382;; (*ITAG) Solyc02g089970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46223245-46232507 transcript_region:SL2.40ch02:46223245..46232507- go_terms:GO:0005634,GO:0005622 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- B0XIT7_CULQU); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0005622 NbS00035513g0001.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|225425045|ref|XP_002270731.1| (e_value=1e-107) PREDICTED: uncharacterized protein LOC100256430 [Vitis vinifera];; (*TAIR) AT3G25545.1 (e_value=2e-88) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9277637-9278440 FORWARD LENGTH=267;; (*ITAG) Solyc05g010290.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4453322-4454134 transcript_region:SL2.40ch05:4453322..4454134+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VYF2_POPTN)"; NbS00035513g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.66|1|1|1|3|0|318; (*GB) gi|255555327|ref|XP_002518700.1| (e_value=0.0) DNA-directed RNA polymerase II subunit, putative [Ricinus communis];; (*SWP) sp|Q39211|RPB3A_ARATH (e_value=0.0) DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1;; (*TAIR) AT2G15430.1 (e_value=0.0) | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | DNA-directed RNA polymerase family protein | chr2:6733661-6735482 FORWARD LENGTH=319;; (*ITAG) Solyc05g010300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4454979-4460526 transcript_region:SL2.40ch05:4454979..4460526+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit 3 (AHRD V1 ***- A4RSP9_OSTLU); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type "; GO:0006350 NbC25310765g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|147797909|emb|CAN69465.1| (e_value=1e-13) hypothetical protein VITISV_023046 [Vitis vinifera];; (*TAIR) AT2G24370.1 (e_value=4e-14) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc08g069190.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55443350-55443628 transcript_region:SL2.40ch08:55443350..55443628- go_terms:GO:0006950 functional_description:"Protein kinase family protein (AHRD V1 ***- Q1PF03_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00008877g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|300; (*GB) gi|225454383|ref|XP_002279147.1| (e_value=2e-152) PREDICTED: acidic endochitinase [Vitis vinifera];; (*SWP) sp|P23472|CHLY_HEVBR (e_value=5e-122) Hevamine-A OS=Hevea brasiliensis PE=1 SV=2;; (*TAIR) AT5G24090.1 (e_value=5e-122) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc01g095310.1.1 (e_value=2e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78387634-78388542 transcript_region:SL2.40ch01:78387634..78388542+ go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00008877g0006.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|225454414|ref|XP_002276427.1| (e_value=7e-79) PREDICTED: uncharacterized protein LOC100258448 [Vitis vinifera];; (*TAIR) AT4G01200.1 (e_value=2e-60) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:506783-507535 REVERSE LENGTH=250;; (*ITAG) Solyc01g095360.2.1 (e_value=1e-119) genomic_reference:SL2.40ch01 gene_region:78397573-78398720 transcript_region:SL2.40ch01:78397573..78398720+ functional_description:"C2 domain-containing protein (AHRD V1 *-*- D7M4Y1_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00008877g0013.1 protein AED:0.25 eAED:0.26 QI:0|0.25|0.2|1|0.5|0.8|5|103|629; (*GB) gi|225454410|ref|XP_002279584.1| (e_value=3e-84) PREDICTED: uncharacterized protein LOC100256846 [Vitis vinifera];; (*SWP) sp|O82345|BAG6_ARATH (e_value=2e-29) BAG family molecular chaperone regulator 6 OS=Arabidopsis thaliana GN=BAG6 PE=1 SV=1;; (*TAIR) AT2G46240.1 (e_value=2e-30) | Symbols: BAG6, ATBAG6 | BCL-2-associated athanogene 6 | chr2:18986586-18989827 FORWARD LENGTH=1043;; (*ITAG) Solyc01g095320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78389556-78394452 transcript_region:SL2.40ch01:78389556..78394452+ go_terms:GO:0006915 functional_description:"BCL-2-associated athanogene 6 (AHRD V1 *-*- D7LDX9_ARALY); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00008877g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|247 NbS00008877g0005.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|204; (*ITAG) Solyc01g095350.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:78395130-78395741 transcript_region:SL2.40ch01:78395130..78395741- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00008915g0007.1 protein AED:0.08 eAED:0.08 QI:132|1|1|1|1|1|2|648|190; (*GB) gi|356559595|ref|XP_003548084.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100789610 [Glycine max];; (*TAIR) AT1G71780.1 (e_value=3e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26995406-26996638 REVERSE LENGTH=197;; (*ITAG) Solyc04g072120.2.1 (e_value=3e-105) genomic_reference:SL2.40ch04 gene_region:56747481-56750237 transcript_region:SL2.40ch04:56747481..56750237- functional_description:"Unknown Protein (AHRD V1)"; NbS00008915g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|224132576|ref|XP_002321356.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45140.1 (e_value=5e-22) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=3e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00060072g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.66|1|1|1|9|0|457; (*GB) gi|255581279|ref|XP_002531451.1| (e_value=2e-95) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25270.1 (e_value=4e-84) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10759779-10762358 FORWARD LENGTH=545;; (*ITAG) Solyc08g041710.2.1 (e_value=2e-122) genomic_reference:SL2.40ch08 gene_region:26805588-26812631 transcript_region:SL2.40ch08:26805588..26812631- functional_description:"Unknown Protein (AHRD V1)"; NbS00014186g0001.1 protein AED:0.25 eAED:0.82 QI:62|0|0|1|0|0|2|220|30 NbS00008309g0009.1 protein AED:0.01 eAED:0.01 QI:109|1|1|1|0.5|0.33|3|216|258; (*GB) gi|255583278|ref|XP_002532403.1| (e_value=3e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42260.1 (e_value=2e-49) | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:17602240-17603283 REVERSE LENGTH=259;; (*ITAG) Solyc10g080400.1.1 (e_value=4e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61005071-61007492 transcript_region:SL2.40ch10:61005071..61007492+ functional_description:"Polychome UV-B-insensitive 4 (AHRD V1 ***- D7LI35_ARALY)"; NbS00008309g0011.1 protein AED:0.18 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|123; (*GB) gi|357480559|ref|XP_003610565.1| (e_value=2e-15) Mo25 family protein [Medicago truncatula];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=2e-14) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=1e-15) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc07g065130.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:64254256-64257617 transcript_region:SL2.40ch07:64254256..64257617- go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00008309g0012.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|0.5|0.33|3|0|65 NbS00008309g0123.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0.5|2|0|216 NbS00008309g0124.1 protein AED:0.03 eAED:0.07 QI:0|0.25|0.2|1|0|0|5|0|500 NbS00008309g0122.1 protein AED:0.25 eAED:0.25 QI:27|0.90|0.83|0.91|0.63|0.58|12|0|350 NbS00008309g0125.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0|1|1|1|3|0|343 NbS00008309g0126.1 protein AED:0.82 eAED:0.88 QI:0|0|0|1|0|0|2|0|221 NbS00039452g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|471|928; (*GB) gi|147798019|emb|CAN69461.1| (e_value=0.0) hypothetical protein VITISV_043132 [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc12g098570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64377333-64380660 transcript_region:SL2.40ch12:64377333..64380660- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00039452g0003.1 protein AED:0.26 eAED:0.33 QI:0|0|0|1|1|1|2|0|219; (*GB) gi|359478001|ref|XP_003632052.1| (e_value=2e-61) PREDICTED: probable glucan endo-1,3-beta-glucosidase A6-like [Vitis vinifera];; (*SWP) sp|Q06915|EA6_ARATH (e_value=1e-36) Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1;; (*TAIR) AT3G07320.1 (e_value=4e-42) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:2332324-2333925 REVERSE LENGTH=460;; (*ITAG) Solyc12g098560.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64370953-64372808 transcript_region:SL2.40ch12:64370953..64372808- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00005534g0203.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|13|79 NbS00005534g0215.1 protein AED:0.27 eAED:0.29 QI:367|0.62|0.66|1|0.87|0.77|9|0|394 NbS00005534g0201.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|90 NbS00005534g0214.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|95 NbS00009312g0003.1 protein AED:0.01 eAED:0.01 QI:377|1|1|1|1|1|4|416|82; (*GB) gi|255538360|ref|XP_002510245.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G33380.1 (e_value=1e-35) | Symbols: | unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:16072064-16074605 FORWARD LENGTH=328;; (*ITAG) Solyc04g079160.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:61324551-61331846 transcript_region:SL2.40ch04:61324551..61331846+ functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 *--- A8HX99_CHLRE)"; NbS00001033g0001.1 protein AED:0.20 eAED:0.20 QI:107|1|1|1|0.53|0.42|14|183|536; (*GB) gi|16904222|gb|AAL30818.1|AF435450_1 (e_value=0.0) calcium/calmodulin-dependent protein kinase CaMK1 [Nicotiana tabacum];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT5G24430.1 (e_value=0.0) | Symbols: | Calcium-dependent protein kinase (CDPK) family protein | chr5:8339390-8342913 REVERSE LENGTH=594;; (*ITAG) Solyc03g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45970606-45979188 transcript_region:SL2.40ch03:45970606..45979188+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase-like protein (AHRD V1 **** Q9FIM9_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00024466g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|81; (*ITAG) Solyc11g039800.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024466g0012.1 protein AED:0.01 eAED:0.01 QI:185|1|1|1|0.4|0.5|6|398|207; (*GB) gi|356512701|ref|XP_003525055.1| (e_value=4e-144) PREDICTED: ras-related protein RABH1e-like [Glycine max];; (*SWP) sp|Q9LFT9|RAH1E_ARATH (e_value=1e-141) Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1;; (*TAIR) AT5G10260.1 (e_value=8e-143) | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog H1E | chr5:3219991-3221301 FORWARD LENGTH=207;; (*ITAG) Solyc05g051570.2.1 (e_value=6e-151) genomic_reference:SL2.40ch05 gene_region:61085144-61089191 transcript_region:SL2.40ch05:61085144..61089191- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-6A (AHRD V1 ***- B6STE7_MAIZE); contains Interpro domain(s) IPR015600 Rab6-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00024466g0013.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|0|0|2|0|445; (*GB) gi|225467664|ref|XP_002269385.1| (e_value=1e-81) PREDICTED: tubulin-specific chaperone C-like [Vitis vinifera];; (*SWP) sp|Q8VCN9|TBCC_MOUSE (e_value=2e-37) Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=2 SV=1;; (*TAIR) AT4G39920.1 (e_value=6e-73) | Symbols: POR, TFC C | C-CAP/cofactor C-like domain-containing protein | chr4:18515882-18516919 FORWARD LENGTH=345;; (*ITAG) Solyc05g052840.1.1 (e_value=1e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62181891-62182916 transcript_region:SL2.40ch05:62181891..62182916- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone C (AHRD V1 **** C1BYH4_ESOLU); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0051087 NbS00022843g0003.1 protein AED:0.08 eAED:0.08 QI:329|0.62|0.55|1|1|1|9|390|761; (*GB) gi|296082642|emb|CBI21647.3| (e_value=3e-55) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g080000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60536402-60540654 transcript_region:SL2.40ch08:60536402..60540654+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016146 Calponin-homology "; NbS00022843g0005.1 protein AED:0.10 eAED:0.10 QI:445|1|1|1|0|0|6|46|83; (*ITAG) Solyc12g056190.1.1 (e_value=9e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:47508349-47510598 transcript_region:SL2.40ch12:47508349..47510598- functional_description:"Nuclear transport factor 2 (NTF2)-like protein (AHRD V1 ***- Q67TV5_ORYSJ)"; NbS00022905g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|86155929|gb|ABC86702.1| (e_value=1e-53) harpin-induced protein-like [Coffea arabica];; (*TAIR) AT5G36970.1 (e_value=6e-43) | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248;; (*ITAG) Solyc02g036480.1.1 (e_value=5e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21545583-21546353 transcript_region:SL2.40ch02:21545583..21546353- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00024315g0011.1 protein AED:0.07 eAED:0.07 QI:208|1|1|1|1|1|4|535|373; (*GB) gi|225436783|ref|XP_002268490.1| (e_value=7e-126) PREDICTED: zinc finger protein CONSTANS-LIKE 13-like isoform 1 [Vitis vinifera];; (*SWP) sp|O82256|COL13_ARATH (e_value=9e-80) Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1;; (*TAIR) AT2G47890.1 (e_value=7e-81) | Symbols: | B-box type zinc finger protein with CCT domain | chr2:19608245-19609476 FORWARD LENGTH=332;; (*ITAG) Solyc09g074560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61872048-61874336 transcript_region:SL2.40ch09:61872048..61874336- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP04_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00024315g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|156891141|gb|ABU96708.1| (e_value=8e-59) glutaredoxin [Solanum tuberosum];; (*SWP) sp|O82255|GRC13_ARATH (e_value=5e-48) Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1;; (*TAIR) AT2G47880.1 (e_value=4e-49) | Symbols: | Glutaredoxin family protein | chr2:19605124-19605432 FORWARD LENGTH=102;; (*ITAG) Solyc06g008760.1.1 (e_value=5e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2680655-2680960 transcript_region:SL2.40ch06:2680655..2680960+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B3F8F2_SOLTU); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00024315g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|351724057|ref|NP_001238068.1| (e_value=5e-40) uncharacterized protein LOC100305876 [Glycine max];; (*SWP) sp|Q9LYC6|GRC11_ARATH (e_value=4e-38) Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1;; (*TAIR) AT3G62950.1 (e_value=3e-39) | Symbols: | Thioredoxin superfamily protein | chr3:23266303-23266614 FORWARD LENGTH=103;; (*ITAG) Solyc09g074580.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61920745-61921053 transcript_region:SL2.40ch09:61920745..61921053- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9W1_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00015300g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.84|0.78|0.92|0.69|0.64|14|543|311; (*GB) gi|255538588|ref|XP_002510359.1| (e_value=1e-178) cop9 complex subunit, putative [Ricinus communis];; (*SWP) sp|Q8L5U0|CSN4_ARATH (e_value=2e-163) COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2;; (*TAIR) AT5G42970.1 (e_value=1e-164) | Symbols: COP8, FUS4, EMB134, COP14, CSN4, FUS8, ATS4 | Proteasome component (PCI) domain protein | chr5:17237470-17240649 REVERSE LENGTH=397;; (*ITAG) Solyc04g080160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62012763-62021439 transcript_region:SL2.40ch04:62012763..62021439+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 4 (AHRD V1 ***- B4FCA4_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00027224g0003.1 protein AED:0.00 eAED:0.00 QI:392|1|1|1|1|1|2|240|365; (*GB) gi|255542012|ref|XP_002512070.1| (e_value=1e-78) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LMX5|AFP2_ARATH (e_value=7e-53) Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1;; (*TAIR) AT1G13740.1 (e_value=5e-54) | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713969-4715158 FORWARD LENGTH=348;; (*ITAG) Solyc04g005380.2.1 (e_value=6e-123) genomic_reference:SL2.40ch04 gene_region:272481-276895 transcript_region:SL2.40ch04:272481..276895+ go_terms:GO:0005515 functional_description:"Ninja-family protein Os03g0214200 (AHRD V1 ***- NNJA1_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515 NbS00009146g0004.1 protein AED:0.22 eAED:0.22 QI:10|1|1|1|0.8|0.83|6|210|259; (*GB) gi|225441393|ref|XP_002278312.1| (e_value=2e-122) PREDICTED: uncharacterized protein LOC100241760 [Vitis vinifera];; (*SWP) sp|O48529|STR9_ARATH (e_value=2e-115) Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1;; (*TAIR) AT2G42220.1 (e_value=2e-116) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17592105-17593305 FORWARD LENGTH=234;; (*ITAG) Solyc03g053110.2.1 (e_value=1e-128) genomic_reference:SL2.40ch03 gene_region:20228686-20232057 transcript_region:SL2.40ch03:20228686..20232057- functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00015034g0011.1 protein AED:0.35 eAED:0.35 QI:90|1|1|1|0|1|2|250|73; (*TAIR) AT3G14430.1 (e_value=5e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4824399-4824732 REVERSE LENGTH=76;; (*ITAG) Solyc03g058340.2.1 (e_value=4e-31) genomic_reference:SL2.40ch03 gene_region:21295375-21302723 transcript_region:SL2.40ch03:21295375..21302723+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015034g0015.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|0.66|0.5|4|0|335; (*GB) gi|359476779|ref|XP_002278934.2| (e_value=7e-167) PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SWF9|ZFNL_PEA (e_value=3e-150) Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G02830.1 (e_value=3e-119) | Symbols: ZFN1 | zinc finger protein 1 | chr3:614075-615916 FORWARD LENGTH=397;; (*ITAG) Solyc11g008900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3068520-3076321 transcript_region:SL2.40ch11:3068520..3076321+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00015034g0013.1 protein AED:0.23 eAED:0.23 QI:276|1|1|1|0|0|2|0|29 NbS00025834g0007.1 protein AED:0.05 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|311; (*GB) gi|312836|emb|CAA49895.1| (e_value=4e-78) proline-rich protein [Nicotiana alata];; (*SWP) sp|Q03211|PEXLP_TOBAC (e_value=3e-26) Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G34700.1 (e_value=1e-29) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:14634298-14635597 REVERSE LENGTH=175;; (*ITAG) Solyc02g078100.2.1 (e_value=1e-65) genomic_reference:SL2.40ch02 gene_region:37460455-37462015 transcript_region:SL2.40ch02:37460455..37462015- go_terms:GO:0005199 functional_description:"pistil extensin-like protein (Fragment) (AHRD V1 *-*- Q49I33_NICPL); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00032077g0005.1 protein AED:0.24 eAED:0.25 QI:286|0.7|0.45|1|0.5|0.54|11|0|830; (*GB) gi|225424901|ref|XP_002269942.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255337 [Vitis vinifera];; (*TAIR) AT3G17900.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:6128983-6133069 FORWARD LENGTH=838;; (*ITAG) Solyc05g007030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1617323-1626373 transcript_region:SL2.40ch05:1617323..1626373+ functional_description:"AT3g17900/MEB5_12 (AHRD V1 ***- Q9ASZ4_ARATH)"; NbS00005829g0006.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|142; (*ITAG) Solyc01g056950.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00005829g0002.1 protein AED:0.38 eAED:0.38 QI:191|0|0.5|1|0|0.5|2|0|75 NbS00005829g0013.1 protein AED:0.10 eAED:0.14 QI:0|0.55|0.5|1|0.66|0.6|10|0|523; (*GB) gi|134048908|dbj|BAF49520.1| (e_value=0.0) N-methylputrescine oxidase [Nicotiana tabacum];; (*SWP) sp|Q07121|AMO1_ARTS1 (e_value=2e-118) Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc06g071700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40552823-40558827 transcript_region:SL2.40ch06:40552823..40558827- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00033140g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|57013955|ref|YP_173427.1| (e_value=2e-151) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-121) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=4e-148) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=3e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00033140g0005.1 protein AED:0.35 eAED:0.42 QI:0|0|0|1|0|0|2|0|161; (*GB) gi|57013954|ref|YP_173426.1| (e_value=2e-64) hypothetical protein NitaMp085 [Nicotiana tabacum];; (*SWP) sp|P15688|NU2M_BETVU (e_value=1e-21) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) Solyc00g125980.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:16637694-16637897 transcript_region:SL2.40ch00:16637694..16637897+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00033140g0007.1 protein AED:0.46 eAED:0.71 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|147841236|emb|CAN64512.1| (e_value=5e-33) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|P15688|NU2M_BETVU (e_value=3e-20) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) Solyc10g062040.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605388-54605612 transcript_region:SL2.40ch10:54605388..54605612+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00002514g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|76; (*GB) gi|6626173|gb|AAF19524.1|AF213464_1 (e_value=3e-21) cysteine-rich protein [Nicotiana tabacum];; (*SWP) sp|O24172|ALL6_OLEEU (e_value=8e-16) Pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1;; (*ITAG) Solyc06g084180.2.1 (e_value=3e-30) genomic_reference:SL2.40ch06 gene_region:45671598-45672135 transcript_region:SL2.40ch06:45671598..45672135- functional_description:"Pollen allergen Ole e 6 (AHRD V1 ***- ALL6_OLEEU); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00002514g0004.1 protein AED:0.00 eAED:0.00 QI:50|1|1|1|0|0|2|63|101; (*ITAG) Solyc06g084170.2.1 (e_value=5e-41) genomic_reference:SL2.40ch06 gene_region:45670468-45671823 transcript_region:SL2.40ch06:45670468..45671823+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002514g0109.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|0.5|0.33|3|0|133 NbS00026208g0008.1 protein AED:0.06 eAED:0.06 QI:208|0.83|0.71|1|1|1|7|344|628; (*GB) gi|356522474|ref|XP_003529871.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc03g121570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63703871-63708320 transcript_region:SL2.40ch03:63703871..63708320- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00026208g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.8|1|0.75|0.6|5|236|311; (*GB) gi|225442266|ref|XP_002275703.1| (e_value=1e-72) PREDICTED: uncharacterized protein LOC100249711 [Vitis vinifera];; (*TAIR) AT1G17665.1 (e_value=3e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). | chr1:6072432-6074484 REVERSE LENGTH=338;; (*ITAG) Solyc03g121560.2.1 (e_value=3e-114) genomic_reference:SL2.40ch03 gene_region:63698342-63703254 transcript_region:SL2.40ch03:63698342..63703254+ functional_description:"CA-responsive protein (AHRD V1 *-*- A6M8U7_BRAOL)"; NbS00026208g0005.1 protein AED:0.16 eAED:0.16 QI:589|1|1|1|0.85|0.80|21|557|840; (*GB) gi|350537661|ref|NP_001234303.1| (e_value=0.0) beta-galactosidase precursor [Solanum lycopersicum];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc03g121540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63687281-63693179 transcript_region:SL2.40ch03:63687281..63693179+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9ZP11_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin "; GO:0005515 NbS00029310g0013.1 protein AED:0.04 eAED:0.04 QI:93|1|1|1|1|1|3|127|194; (*GB) gi|46401440|gb|AAS92268.1| (e_value=2e-82) early light inducible protein [Solanum lycopersicum];; (*SWP) sp|P11432|ELI_PEA (e_value=9e-50) Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G22840.1 (e_value=2e-51) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195;; (*ITAG) Solyc09g082690.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:63807170-63809227 transcript_region:SL2.40ch09:63807170..63809227- go_terms:GO:0016168 functional_description:"Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)"; GO:0016168 NbS00029310g0009.1 protein AED:0.23 eAED:0.23 QI:234|1|0.94|1|0.82|0.88|18|548|727; (*GB) gi|359477563|ref|XP_002283373.2| (e_value=0.0) PREDICTED: dymeclin-like [Vitis vinifera];; (*SWP) sp|Q5ZLW3|DYM_CHICK (e_value=9e-74) Dymeclin OS=Gallus gallus GN=DYM PE=2 SV=1;; (*TAIR) AT1G04200.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732;; (*ITAG) Solyc09g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63797368-63807682 transcript_region:SL2.40ch09:63797368..63807682+ go_terms:GO:0005515 functional_description:"Dymeclin (AHRD V1 ***- DYM_CHICK); contains Interpro domain(s) IPR019142 Dymeclin "; GO:0005515 NbS00014425g0003.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|1|1|2|0|175; (*ITAG) Solyc09g005880.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:612326-613684 transcript_region:SL2.40ch09:612326..613684- functional_description:"Unknown Protein (AHRD V1)"; NbC25626983g0004.1 protein AED:0.54 eAED:0.69 QI:6|0.25|0|1|1|1|5|0|237; (*GB) gi|371782085|emb|CCE46056.1| (e_value=2e-126) 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Nicotiana tabacum];; (*TAIR) AT5G22620.2 (e_value=3e-61) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=482;; (*ITAG) Solyc06g074510.2.1 (e_value=9e-123) genomic_reference:SL2.40ch06 gene_region:42490467-42495114 transcript_region:SL2.40ch06:42490467..42495114- go_terms:GO:0008152 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 (AHRD V1 *-*- GPMA2_GLOVI); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00030703g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.71|0.5|1|0.71|0.75|8|366|482; (*GB) gi|255573386|ref|XP_002527619.1| (e_value=9e-142) Ras-GTPase-activating protein-binding protein, putative [Ricinus communis];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=4e-20) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT5G60980.2 (e_value=9e-97) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:24543988-24546027 FORWARD LENGTH=460;; (*ITAG) Solyc02g066830.2.1 (e_value=9e-168) genomic_reference:SL2.40ch02 gene_region:31564255-31567882 transcript_region:SL2.40ch02:31564255..31567882+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00001194g0002.1 protein AED:0.05 eAED:0.05 QI:1288|1|1|1|0.42|0.62|8|487|111; (*GB) gi|356576857|ref|XP_003556546.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100803121 [Glycine max];; (*TAIR) AT2G37370.1 (e_value=6e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:15679273-15682932 FORWARD LENGTH=669;; (*ITAG) Solyc09g005890.2.1 (e_value=7e-44) genomic_reference:SL2.40ch09 gene_region:618258-619882 transcript_region:SL2.40ch09:618258..619882- functional_description:"Unknown Protein (AHRD V1)"; NbS00005261g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|225432712|ref|XP_002282836.1| (e_value=6e-36) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*TAIR) AT2G32030.1 (e_value=2e-34) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc06g054090.1.1 (e_value=9e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33417119-33417700 transcript_region:SL2.40ch06:33417119..33417700- go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 **** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00008530g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.66|3|0|285; (*GB) gi|225455004|ref|XP_002279001.1| (e_value=1e-106) PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera];; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=5e-22) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1;; (*TAIR) AT5G07480.1 (e_value=8e-48) | Symbols: KUOX1 | KAR-UP oxidoreductase 1 | chr5:2367167-2369554 FORWARD LENGTH=340;; (*ITAG) Solyc01g090140.1.1 (e_value=3e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75535530-75538204 transcript_region:SL2.40ch01:75535530..75538204+ go_terms:GO:0010302 functional_description:"Naringenin,2-oxoglutarate 3-dioxygenase (AHRD V1 *--* FL3H_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302 NbS00008530g0012.1 protein AED:0.34 eAED:0.34 QI:2|0.5|0.33|1|0.5|1|3|397|135; (*GB) gi|255565822|ref|XP_002523900.1| (e_value=3e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51960.1 (e_value=6e-43) | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:21110716-21111116 FORWARD LENGTH=103;; (*ITAG) Solyc07g065720.2.1 (e_value=2e-62) genomic_reference:SL2.40ch07 gene_region:64613833-64616777 transcript_region:SL2.40ch07:64613833..64616777- functional_description:"Os11g0133900 protein (Fragment) (AHRD V1 ***- Q0IUU7_ORYSJ); contains Interpro domain(s) IPR018471 ATP synthase assembly factor FMC1, mitochondrial "; NbS00008530g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|359493091|ref|XP_002267510.2| (e_value=2e-18) PREDICTED: protease Do-like 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O22609|DEGP1_ARATH (e_value=1e-15) Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2;; (*TAIR) AT3G27925.1 (e_value=8e-17) | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:10366659-10368864 REVERSE LENGTH=439;; (*ITAG) Solyc02g086830.2.1 (e_value=5e-43) genomic_reference:SL2.40ch02 gene_region:44017964-44022130 transcript_region:SL2.40ch02:44017964..44022130+ go_terms:GO:0004252 functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** Q7UQ70_RHOBA); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "; GO:0004252 NbS00018616g0007.1 protein AED:0.00 eAED:0.00 QI:425|1|1|1|1|1|3|544|366; (*GB) gi|297827717|ref|XP_002881741.1| (e_value=6e-139) hypothetical protein ARALYDRAFT_903376 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G40800.1 (e_value=9e-140) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17024653-17026769 REVERSE LENGTH=377;; (*ITAG) Solyc03g095470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50038110-50041530 transcript_region:SL2.40ch03:50038110..50041530+ functional_description:"Chromosome 01 contig 1 DNA sequence (Fragment) (AHRD V1 *-*- Q01FK5_OSTTA); contains Interpro domain(s) IPR013261 Mitochondrial inner membrane translocase complex, subunit Tim21 "; NbS00018616g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|4|0|227; (*GB) gi|255565291|ref|XP_002523637.1| (e_value=5e-75) abc transporter, putative [Ricinus communis];; (*SWP) sp|Q9CAF5|AB6I_ARATH (e_value=3e-73) ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1;; (*TAIR) AT3G10670.1 (e_value=3e-74) | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein 7 | chr3:3335325-3337304 REVERSE LENGTH=338;; (*ITAG) Solyc06g048540.2.1 (e_value=2e-79) genomic_reference:SL2.40ch06 gene_region:27702205-27706442 transcript_region:SL2.40ch06:27702205..27706442- go_terms:GO:0015623 functional_description:"FeS assembly ATPase SufC (AHRD V1 **** B5W7S4_SPIMA); contains Interpro domain(s) IPR010230 ATPase SufC, SUF system FeS cluster assembly "; GO:0015623 NbS00016462g0004.1 protein AED:0.42 eAED:0.42 QI:417|0.6|0.5|1|1|1|6|0|144; (*GB) gi|297739730|emb|CBI29912.3| (e_value=1e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8C1A9|CD029_MOUSE (e_value=9e-17) Uncharacterized protein C4orf29 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT3G12150.1 (e_value=2e-87) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr3:3876688-3878621 REVERSE LENGTH=363;; (*ITAG) Solyc03g064030.2.1 (e_value=5e-93) genomic_reference:SL2.40ch03 gene_region:34614329-34620105 transcript_region:SL2.40ch03:34614329..34620105- go_terms:GO:0005515 functional_description:"C4orf29 homolog (AHRD V1 **-- B5X1A7_SALSA); contains Interpro domain(s) IPR019149 Protein of unknown function DUF2048 "; GO:0005515 NbS00015245g0013.1 protein AED:0.08 eAED:0.08 QI:160|1|0.75|1|1|1|4|0|254; (*GB) gi|296084007|emb|CBI24395.3| (e_value=2e-59) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G43590.1 (e_value=4e-33) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551;; (*ITAG) Solyc06g073810.2.1 (e_value=3e-139) genomic_reference:SL2.40ch06 gene_region:41946839-41953093 transcript_region:SL2.40ch06:41946839..41953093- go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 *--- C1BKU7_OSMMO); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00015245g0012.1 protein AED:0.28 eAED:0.28 QI:175|1|1|1|1|1|6|257|159; (*GB) gi|255571087|ref|XP_002526494.1| (e_value=7e-97) 40S ribosomal protein S11, putative [Ricinus communis];; (*SWP) sp|P17093|RS11_SOYBN (e_value=1e-97) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=1e-94) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=8e-102) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00015245g0011.1 protein AED:0.34 eAED:0.34 QI:143|0|0.25|0.25|0.66|1|4|0|88; (*GB) gi|224102947|ref|XP_002312865.1| (e_value=8e-45) condensin complex components subunit [Populus trichocarpa];; (*SWP) sp|O93309|SMC3_XENLA (e_value=1e-35) Structural maintenance of chromosomes protein 3 OS=Xenopus laevis GN=smc3 PE=1 SV=2;; (*TAIR) AT2G27170.2 (e_value=3e-44) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=5e-49) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00020377g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|224110558|ref|XP_002315557.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=2e-40) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=7e-38) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066980.2.1 (e_value=5e-55) genomic_reference:SL2.40ch01 gene_region:67684096-67684727 transcript_region:SL2.40ch01:67684096..67684727- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00020377g0005.1 protein AED:0.28 eAED:0.28 QI:352|1|1|1|0.14|0.12|8|415|258; (*GB) gi|225443415|ref|XP_002268835.1| (e_value=5e-138) PREDICTED: E3 ubiquitin-protein ligase MARCH1 [Vitis vinifera];; (*TAIR) AT1G50440.3 (e_value=2e-120) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:18686099-18687646 FORWARD LENGTH=250;; (*ITAG) Solyc03g123950.2.1 (e_value=5e-117) genomic_reference:SL2.40ch03 gene_region:64693947-64697948 transcript_region:SL2.40ch03:64693947..64697948- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH2 (AHRD V1 *-*- B5XFT2_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbC25685337g0001.1 protein AED:0.05 eAED:0.05 QI:39|1|1|1|0.66|0.5|4|31|265; (*GB) gi|350534776|ref|NP_001234159.1| (e_value=2e-158) pollen-specific kinase partner protein [Solanum lycopersicum];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=3e-137) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=1e-146) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc12g044270.1.1 (e_value=6e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44606763-44609277 transcript_region:SL2.40ch12:44606763..44609277+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00021081g0012.1 protein AED:0.11 eAED:0.14 QI:0|1|0.6|1|1|1|5|0|601; (*GB) gi|225428257|ref|XP_002282312.1| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=0.0) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT4G38430.1 (e_value=0.0) | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide exchange factor 1 | chr4:17986643-17988659 FORWARD LENGTH=548;; (*ITAG) Solyc01g111930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89848040-89865881 transcript_region:SL2.40ch01:89848040..89865881- go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 **-* ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00021081g0014.1 protein AED:0.09 eAED:0.13 QI:0|0.66|0.25|1|0|0.25|4|529|466; (*GB) gi|359474974|ref|XP_002279526.2| (e_value=2e-117) PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis vinifera];; (*SWP) sp|Q3EBZ2|SKI23_ARATH (e_value=8e-88) F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1;; (*TAIR) AT2G17030.1 (e_value=6e-89) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399108-7400650 FORWARD LENGTH=407;; (*ITAG) Solyc01g111920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89844796-89847331 transcript_region:SL2.40ch01:89844796..89847331+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00034799g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|470; (*GB) gi|225435299|ref|XP_002282306.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267366 [Vitis vinifera];; (*TAIR) AT3G53400.1 (e_value=1e-111) | Symbols: | BEST Arabidopsis thaliana protein match is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1); Has 285 Blast hits to 285 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:19798526-19799926 FORWARD LENGTH=466;; (*ITAG) Solyc11g069330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51019387-51020805 transcript_region:SL2.40ch11:51019387..51020805- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 **-- Q9LYW6_ARATH)"; NbS00047002g0003.1 protein AED:0.33 eAED:0.33 QI:221|1|0.8|1|1|1|5|201|240; (*GB) gi|225439426|ref|XP_002265093.1| (e_value=3e-117) PREDICTED: PHD finger protein ALFIN-LIKE 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FFF5|ALFL1_ARATH (e_value=1e-105) PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1;; (*TAIR) AT5G05610.2 (e_value=8e-107) | Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241;; (*ITAG) Solyc10g076690.1.1 (e_value=7e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58957075-58963034 transcript_region:SL2.40ch10:58957075..58963034- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7LYZ0_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00051617g0008.1 protein AED:0.12 eAED:0.18 QI:0|0.5|0.2|1|0.75|0.8|5|0|328; (*GB) gi|255552566|ref|XP_002517326.1| (e_value=4e-110) Alpha-L-fucosidase 2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LY84|GDL76_ARATH (e_value=4e-84) GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1;; (*TAIR) AT5G14450.1 (e_value=3e-85) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389;; (*ITAG) Solyc06g073100.2.1 (e_value=3e-164) genomic_reference:SL2.40ch06 gene_region:41421766-41423818 transcript_region:SL2.40ch06:41421766..41423818+ go_terms:GO:0004560,GO:0004091 functional_description:"GDSL esterase/lipase At3g27950 (AHRD V1 ***- GDL54_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004560,GO:0004091 NbS00051617g0007.1 protein AED:0.28 eAED:0.33 QI:0|0.4|0.16|0.66|0.8|0.66|6|192|688; (*GB) gi|147772904|emb|CAN75715.1| (e_value=0.0) hypothetical protein VITISV_034017 [Vitis vinifera];; (*TAIR) AT1G08760.1 (e_value=3e-180) | Symbols: | Plant protein of unknown function (DUF936) | chr1:2805478-2808409 FORWARD LENGTH=748;; (*ITAG) Solyc06g073110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41424260-41431619 transcript_region:SL2.40ch06:41424260..41431619- functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00000548g0008.1 protein AED:0.29 eAED:0.30 QI:0|0.8|0.5|1|1|0.66|6|0|363; (*GB) gi|255573386|ref|XP_002527619.1| (e_value=2e-130) Ras-GTPase-activating protein-binding protein, putative [Ricinus communis];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=8e-21) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT5G60980.2 (e_value=1e-94) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:24543988-24546027 FORWARD LENGTH=460;; (*ITAG) Solyc02g066830.2.1 (e_value=2e-148) genomic_reference:SL2.40ch02 gene_region:31564255-31567882 transcript_region:SL2.40ch02:31564255..31567882+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00000548g0001.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|47825035|gb|AAT38805.1| (e_value=3e-18) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=1e-33) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013415g0011.1 protein AED:0.40 eAED:0.40 QI:0|0.8|0.66|1|0.8|0.83|6|0|288; (*GB) gi|224123860|ref|XP_002319182.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G35910.1 (e_value=1e-52) | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870;; (*ITAG) Solyc10g018520.1.1 (e_value=2e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8546934-8549519 transcript_region:SL2.40ch10:8546934..8549519- go_terms:GO:0003676,GO:0005622 functional_description:"Exosome component 10 (AHRD V1 **-- Q6NVP3_XENTR); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00013415g0012.1 protein AED:0.76 eAED:0.76 QI:0|0.5|0.22|0.55|0.75|1|9|0|407; (*GB) gi|224144831|ref|XP_002325430.1| (e_value=7e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q01780|EXOSX_HUMAN (e_value=2e-65) Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2;; (*TAIR) AT5G35910.1 (e_value=2e-147) | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870;; (*ITAG) Solyc10g018520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8546934-8549519 transcript_region:SL2.40ch10:8546934..8549519- go_terms:GO:0003676,GO:0005622 functional_description:"Exosome component 10 (AHRD V1 **-- Q6NVP3_XENTR); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00054423g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.25|1|1|4|0|293; (*GB) gi|297739298|emb|CBI28949.3| (e_value=1e-132) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=2e-91) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=1e-87) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=9e-93) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00018479g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|232; (*GB) gi|30524691|emb|CAC85247.1| (e_value=2e-35) salt tolerance protein 5 [Beta vulgaris];; (*SWP) sp|Q5ZIN1|NUDC_CHICK (e_value=1e-20) Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1;; (*TAIR) AT4G27890.1 (e_value=3e-37) | Symbols: | HSP20-like chaperones superfamily protein | chr4:13886033-13887220 FORWARD LENGTH=293;; (*ITAG) Solyc02g062410.1.1 (e_value=2e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28585511-28586459 transcript_region:SL2.40ch02:28585511..28586459- go_terms:GO:0051082,GO:0042802 functional_description:"Nuclear movement protein nudc (AHRD V1 ***- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; GO:0051082,GO:0042802 NbS00018479g0013.1 protein AED:0.24 eAED:0.39 QI:0|0.5|0.2|1|0.5|0.2|5|0|160; (*GB) gi|255554020|ref|XP_002518050.1| (e_value=9e-33) Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis];; (*SWP) sp|Q5R7Q3|NIPA2_PONAB (e_value=3e-17) Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G34470.1 (e_value=3e-30) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc09g092220.2.1 (e_value=1e-38) genomic_reference:SL2.40ch09 gene_region:66706228-66710546 transcript_region:SL2.40ch09:66706228..66710546- go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbS00018479g0009.1 protein AED:0.57 eAED:0.57 QI:12|0|0.5|0.5|0|0|2|156|36 NbS00018479g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|251; (*GB) gi|77999263|gb|ABB16978.1| (e_value=4e-74) salt tolerance protein 5-like protein [Solanum tuberosum];; (*SWP) sp|Q5ZIN1|NUDC_CHICK (e_value=4e-51) Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1;; (*TAIR) AT5G53400.1 (e_value=4e-68) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc09g092210.2.1 (e_value=1e-117) genomic_reference:SL2.40ch09 gene_region:66700581-66705403 transcript_region:SL2.40ch09:66700581..66705403+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00018479g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|224055847|ref|XP_002298683.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g092210.2.1 (e_value=1e-157) genomic_reference:SL2.40ch09 gene_region:66700581-66705403 transcript_region:SL2.40ch09:66700581..66705403+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00024755g0010.1 protein AED:0.46 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|255563804|ref|XP_002522903.1| (e_value=2e-34) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q9XHE8|C71DI_MENSP (e_value=2e-31) Cytochrome P450 71D18 OS=Mentha spicata GN=CYP71D18 PE=1 SV=1;; (*TAIR) AT2G45560.1 (e_value=6e-30) | Symbols: CYP76C1 | cytochrome P450, family 76, subfamily C, polypeptide 1 | chr2:18776391-18778354 REVERSE LENGTH=512;; (*ITAG) Solyc08g005650.2.1 (e_value=8e-45) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00048247g0002.1 protein AED:0.46 eAED:0.72 QI:0|1|0|1|1|1|2|0|77 NbS00010498g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.5|1|3|646|228; (*GB) gi|384038831|gb|AFH58006.1| (e_value=5e-128) chloroplast PsbQ2 precursor [Nicotiana benthamiana];; (*SWP) sp|P12301|PSBQ_SPIOL (e_value=1e-78) Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1;; (*TAIR) AT4G05180.1 (e_value=4e-79) | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230;; (*ITAG) Solyc02g079950.2.1 (e_value=6e-120) genomic_reference:SL2.40ch02 gene_region:38907616-38909519 transcript_region:SL2.40ch02:38907616..38909519- go_terms:GO:0019898 functional_description:"Oxygen-evolving enhancer protein 3 (AHRD V1 ***- Q7Y1T5_PEA); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "; GO:0019898 NbS00010498g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|173; (*GB) gi|15233592|ref|NP_193862.1| (e_value=6e-63) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G21310.1 (e_value=1e-65) | Symbols: | Protein of unknown function (DUF1218) | chr4:11339134-11339787 REVERSE LENGTH=168;; (*ITAG) Solyc02g079940.2.1 (e_value=1e-92) genomic_reference:SL2.40ch02 gene_region:38905889-38907292 transcript_region:SL2.40ch02:38905889..38907292+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00010808g0010.1 protein AED:0.05 eAED:0.05 QI:368|1|0.88|1|0.62|0.66|9|807|593; (*GB) gi|225452909|ref|XP_002278808.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245770 [Vitis vinifera];; (*TAIR) AT3G29180.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc02g067040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31865444-31869032 transcript_region:SL2.40ch02:31865444..31869032+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 *--- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00010808g0014.1 protein AED:0.10 eAED:0.10 QI:172|0.33|0.25|0.75|0.66|0.75|4|0|306; (*GB) gi|225452924|ref|XP_002284130.1| (e_value=1e-119) PREDICTED: UPF0301 protein Cpha266_0885-like isoform 1 [Vitis vinifera];; (*TAIR) AT3G29240.2 (e_value=1e-104) | Symbols: | Protein of unknown function (DUF179) | chr3:11191780-11192868 FORWARD LENGTH=317;; (*ITAG) Solyc02g067050.2.1 (e_value=3e-164) genomic_reference:SL2.40ch02 gene_region:31869821-31871550 transcript_region:SL2.40ch02:31869821..31871550+ functional_description:"Uncharacterized ACR COG1678 family protein (AHRD V1 **-- B6SSQ6_MAIZE); contains Interpro domain(s) IPR003774 Protein of unknown function DUF179 "; NbS00010808g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|169; (*ITAG) Solyc02g067070.2.1 (e_value=2e-39) genomic_reference:SL2.40ch02 gene_region:31881479-31885739 transcript_region:SL2.40ch02:31881479..31885739- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00003100g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|178; (*GB) gi|356576525|ref|XP_003556381.1| (e_value=1e-73) PREDICTED: uncharacterized protein LOC100806497 [Glycine max];; (*TAIR) AT3G23290.2 (e_value=6e-75) | Symbols: LSH4 | Protein of unknown function (DUF640) | chr3:8326958-8328010 FORWARD LENGTH=195;; (*ITAG) Solyc09g090180.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65061991-65062617 transcript_region:SL2.40ch09:65061991..65062617- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00037151g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|279|331; (*GB) gi|255566953|ref|XP_002524459.1| (e_value=7e-96) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LT81|C3H39_ARATH (e_value=2e-66) Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1;; (*TAIR) AT3G19360.1 (e_value=2e-67) | Symbols: | Zinc finger (CCCH-type) family protein | chr3:6707544-6708864 FORWARD LENGTH=386;; (*ITAG) Solyc11g070070.1.1 (e_value=3e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51701395-51703065 transcript_region:SL2.40ch11:51701395..51703065- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 39 (AHRD V1 ***- C3H39_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00000349g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|178; (*ITAG) Solyc06g074260.2.1 (e_value=6e-46) genomic_reference:SL2.40ch06 gene_region:42295490-42302447 transcript_region:SL2.40ch06:42295490..42302447- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMQ8_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00019506g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|307136090|gb|ADN33938.1| (e_value=0.0) seven transmembrane receptor [Cucumis melo subsp. melo];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=3e-76) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G42090.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:16826830-16828149 FORWARD LENGTH=439;; (*ITAG) Solyc03g082440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45927948-45929270 transcript_region:SL2.40ch03:45927948..45929270- go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00019506g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|242; (*GB) gi|3256372|dbj|BAA29064.1| (e_value=6e-126) heat shock protein 26 (Type I) [Nicotiana tabacum];; (*SWP) sp|P30222|HS22C_PETHY (e_value=5e-115) Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1;; (*TAIR) AT4G27670.1 (e_value=1e-71) | Symbols: HSP21 | heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227;; (*ITAG) Solyc03g082420.2.1 (e_value=4e-110) genomic_reference:SL2.40ch03 gene_region:45898742-45899828 transcript_region:SL2.40ch03:45898742..45899828- functional_description:"Heat shock protein (AHRD V1 ***- A9QVH3_9FABA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00019506g0011.1 protein AED:0.10 eAED:0.17 QI:0|0.5|0.4|1|0.75|0.8|5|0|610; (*GB) gi|359490734|ref|XP_002271355.2| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100250422 [Vitis vinifera];; (*TAIR) AT4G24150.1 (e_value=2e-33) | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 | chr4:12535972-12539387 FORWARD LENGTH=493;; (*ITAG) Solyc03g082430.1.1 (e_value=2e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45902716-45904451 transcript_region:SL2.40ch03:45902716..45904451- go_terms:GO:0005634 functional_description:"Growth-regulating factor 4 (AHRD V1 *--- Q6ZIK5_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00019506g0019.1 protein AED:0.35 eAED:0.35 QI:312|0.95|0.95|1|0.42|0.59|22|1402|363; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=3e-151) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=2e-140) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc03g082390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45884107-45891169 transcript_region:SL2.40ch03:45884107..45891169+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein (AHRD V1 *-** Q1PFP3_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00046117g0004.1 protein AED:0.14 eAED:0.14 QI:248|0.94|0.94|1|0.70|0.77|18|727|851; (*GB) gi|225448507|ref|XP_002273020.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera];; (*TAIR) AT3G56040.1 (e_value=0.0) | Symbols: UGP3 | UDP-glucose pyrophosphorylase 3 | chr3:20792689-20797482 REVERSE LENGTH=883;; (*ITAG) Solyc06g051080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30687110-30697786 transcript_region:SL2.40ch06:30687110..30697786+ functional_description:"UDP-sugar pyrophosphorylase (AHRD V1 *--- USP_ORYSI)"; NbS00052286g0002.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|793; (*GB) gi|224068933|ref|XP_002302860.1| (e_value=3e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVN6|AP180_ARATH (e_value=4e-149) Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1;; (*TAIR) AT1G05020.1 (e_value=3e-150) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:1435384-1437345 REVERSE LENGTH=653;; (*ITAG) Solyc12g006000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:616051-618237 transcript_region:SL2.40ch12:616051..618237+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein-like (AHRD V1 *-*- Q8LJJ6_ORYSJ); contains Interpro domain(s) IPR011417 ANTH "; GO:0030118,GO:0005543 NbS00052286g0005.1 protein AED:0.51 eAED:0.76 QI:27|0|0|1|1|1|2|0|112; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=2e-27) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=1e-12) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=9e-14) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc12g005990.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:608257-613415 transcript_region:SL2.40ch12:608257..613415+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00021715g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|1|1|5|0|360; (*GB) gi|225459955|ref|XP_002266194.1| (e_value=2e-167) PREDICTED: GDSL esterase/lipase At1g71250 [Vitis vinifera];; (*SWP) sp|Q9FVV1|GDL28_ARATH (e_value=4e-164) GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1;; (*TAIR) AT1G71250.1 (e_value=3e-165) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26860125-26861582 FORWARD LENGTH=374;; (*ITAG) Solyc11g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34833475-34835605 transcript_region:SL2.40ch11:34833475..34835605+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00021715g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0|0.83|0.4|0.5|6|0|290; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=5e-49) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00021715g0010.1 protein AED:0.28 eAED:0.55 QI:0|0|0|1|1|0.5|2|0|107; (*ITAG) Solyc07g021740.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00026424g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.72|1|0.7|0.63|11|1512|354; (*GB) gi|224061226|ref|XP_002300379.1| (e_value=3e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=8e-116) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=6e-117) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc10g005950.2.1 (e_value=1e-157) genomic_reference:SL2.40ch10 gene_region:733326-738148 transcript_region:SL2.40ch10:733326..738148+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00054179g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0|2|0|167; (*GB) gi|297746206|emb|CBI16262.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=3e-69) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=2e-70) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc06g005090.2.1 (e_value=3e-95) genomic_reference:SL2.40ch06 gene_region:104026-105417 transcript_region:SL2.40ch06:104026..105417- go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00023394g0010.1 protein AED:0.12 eAED:0.16 QI:41|0.6|0.33|1|0.8|0.5|6|0|485; (*GB) gi|332071136|gb|AED99886.1| (e_value=0.0) glycosyltransferase [Panax notoginseng];; (*SWP) sp|Q5E9Q1|PGLT1_BOVIN (e_value=3e-24) Protein O-glucosyltransferase 1 OS=Bos taurus GN=POGLUT1 PE=2 SV=1;; (*TAIR) AT5G23850.1 (e_value=0.0) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr5:8038126-8040741 FORWARD LENGTH=542;; (*ITAG) Solyc03g025780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7550504-7554288 transcript_region:SL2.40ch03:7550504..7554288- functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00023394g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|127|146; (*GB) gi|356559813|ref|XP_003548191.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100802676 isoform 2 [Glycine max];; (*TAIR) AT3G48970.1 (e_value=1e-46) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:18152408-18153296 REVERSE LENGTH=140;; (*ITAG) Solyc03g025790.2.1 (e_value=2e-74) genomic_reference:SL2.40ch03 gene_region:7560994-7562401 transcript_region:SL2.40ch03:7560994..7562401+ go_terms:GO:0005515,GO:0005507 functional_description:"Metal ion binding protein (AHRD V1 **-* B6SL50_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515,GO:0005507 NbS00023394g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|104; (*GB) gi|255539451|ref|XP_002510790.1| (e_value=5e-23) metal ion binding protein, putative [Ricinus communis];; (*TAIR) AT5G23760.1 (e_value=2e-22) | Symbols: | Copper transport protein family | chr5:8013242-8014129 REVERSE LENGTH=103;; (*ITAG) Solyc03g025800.2.1 (e_value=2e-31) genomic_reference:SL2.40ch03 gene_region:7580726-7581588 transcript_region:SL2.40ch03:7580726..7581588+ go_terms:GO:0030001 functional_description:"Os03g0111400 protein (Fragment) (AHRD V1 *-*- Q0DVV0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00003545g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|534; (*GB) gi|224115242|ref|XP_002332196.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-149) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT5G44440.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr5:17910694-17912295 REVERSE LENGTH=533;; (*ITAG) Solyc06g065060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36964190-36965806 transcript_region:SL2.40ch06:36964190..36965806- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFI0_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00003545g0001.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.6|1|1|5|0|332; (*GB) gi|359480243|ref|XP_002275819.2| (e_value=1e-55) PREDICTED: probable pectinesterase/pectinesterase inhibitor 21-like [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=2e-28) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=1e-29) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbC24891847g0001.1 protein AED:0.08 eAED:0.18 QI:0|0|0|1|1|1|2|0|194; (*GB) gi|147803378|emb|CAN71047.1| (e_value=7e-93) hypothetical protein VITISV_015116 [Vitis vinifera];; (*SWP) sp|Q9LMR5|FK126_ARATH (e_value=5e-39) F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1;; (*TAIR) AT1G15670.1 (e_value=4e-40) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5390119-5391198 FORWARD LENGTH=359;; (*ITAG) Solyc10g080610.1.1 (e_value=5e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61166125-61167159 transcript_region:SL2.40ch10:61166125..61167159+ functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00008722g0003.1 protein AED:0.04 eAED:0.04 QI:354|1|1|1|1|1|5|128|381; (*GB) gi|358249128|ref|NP_001240253.1| (e_value=0.0) uncharacterized protein LOC100780915 precursor [Glycine max];; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=4e-178) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=3e-179) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc01g095450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78449856-78452248 transcript_region:SL2.40ch01:78449856..78452248- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003920g0008.1 protein AED:0.21 eAED:0.21 QI:24|0.8|0.81|1|1|1|11|195|405; (*GB) gi|359483871|ref|XP_002276286.2| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera];; (*SWP) sp|A0JMA9|KATL2_XENTR (e_value=8e-120) Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1;; (*TAIR) AT2G34560.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14560266-14562695 FORWARD LENGTH=393;; (*ITAG) Solyc02g070440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34752452-34759726 transcript_region:SL2.40ch02:34752452..34759726+ go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit A (AHRD V1 **-* D0P3C9_PHYIN); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00040982g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=8e-42) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=2e-39) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=1e-40) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011860.1.1 (e_value=3e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4274482-4274790 transcript_region:SL2.40ch04:4274482..4274790+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00040982g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=4e-45) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=5e-42) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=4e-43) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011860.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4274482-4274790 transcript_region:SL2.40ch04:4274482..4274790+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00040756g0005.1 protein AED:0.09 eAED:0.21 QI:0|0|0.33|1|0.5|0.66|3|0|961; (*GB) gi|147812190|emb|CAN63610.1| (e_value=4e-54) hypothetical protein VITISV_000282 [Vitis vinifera];; (*ITAG) Solyc07g055910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61137811-61143100 transcript_region:SL2.40ch07:61137811..61143100+ go_terms:GO:0009401 functional_description:"Unknown Protein (AHRD V1)"; GO:0009401 NbS00049793g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|602; (*GB) gi|225452922|ref|XP_002278886.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g29230 [Vitis vinifera];; (*SWP) sp|Q9LS72|PP261_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1;; (*TAIR) AT3G29230.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:11188803-11190605 FORWARD LENGTH=600;; (*ITAG) Solyc02g088470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45132409-45134217 transcript_region:SL2.40ch02:45132409..45134217+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbC24537800g0001.1 protein AED:0.15 eAED:0.27 QI:47|-1|0|1|-1|0|1|0|97; (*GB) gi|193795999|gb|ACF22051.1| (e_value=8e-56) NBS-coding resistance gene protein [Nicotiana tabacum];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=5e-19) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=6e-17) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g007630.1.1 (e_value=2e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00030918g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|206 NbS00033218g0005.1 protein AED:0.33 eAED:0.37 QI:152|1|0.71|1|0.83|0.71|7|0|204; (*GB) gi|255539493|ref|XP_002510811.1| (e_value=7e-129) ADP-ribosylation factor, putative [Ricinus communis];; (*SWP) sp|Q63055|ARFRP_RAT (e_value=1e-53) ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1;; (*TAIR) AT5G52210.2 (e_value=2e-118) | Symbols: ATARLB1, ATGB1, GB1 | GTP-binding protein 1 | chr5:21205567-21206840 FORWARD LENGTH=205;; (*ITAG) Solyc10g074630.1.1 (e_value=5e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57508319-57514041 transcript_region:SL2.40ch10:57508319..57514041+ go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor (AHRD V1 ***- B0WVM5_CULQU); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00025203g0010.1 protein AED:0.17 eAED:0.18 QI:63|0.83|0.84|1|0.66|0.76|13|166|918; (*GB) gi|357451869|ref|XP_003596211.1| (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula];; (*SWP) sp|Q9FPS9|UBP15_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2;; (*TAIR) AT1G17110.1 (e_value=0.0) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=924;; (*ITAG) Solyc07g061780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00025203g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|0.5|2|0|229; (*GB) gi|388517637|gb|AFK46880.1| (e_value=7e-68) unknown [Lotus japonicus];; (*SWP) sp|Q9Y5Z4|HEBP2_HUMAN (e_value=8e-16) Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1;; (*TAIR) AT1G17100.1 (e_value=9e-61) | Symbols: | SOUL heme-binding family protein | chr1:5844766-5845539 FORWARD LENGTH=232;; (*ITAG) Solyc07g061790.2.1 (e_value=1e-86) genomic_reference:SL2.40ch07 gene_region:61964267-61965352 transcript_region:SL2.40ch07:61964267..61965352- go_terms:GO:0020037 functional_description:"Heme-binding protein 2 (AHRD V1 **** B6T0C0_MAIZE); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0020037 NbS00025203g0003.1 protein AED:0.40 eAED:0.68 QI:0|-1|0|1|-1|1|1|0|242 NbS00046797g0005.1 protein AED:0.38 eAED:0.38 QI:146|1|0.87|1|0.71|0.62|8|0|270; (*GB) gi|297829558|ref|XP_002882661.1| (e_value=4e-139) transcription initiation factor IIB-2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P48513|TF2B_SOYBN (e_value=2e-140) Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=1e-140) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079370.1.1 (e_value=8e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60239317-60242457 transcript_region:SL2.40ch10:60239317..60242457- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbS00044679g0001.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|647; (*GB) gi|147791954|emb|CAN75238.1| (e_value=0.0) hypothetical protein VITISV_014204 [Vitis vinifera];; (*SWP) sp|Q9SYG9|CCX4_ARATH (e_value=0.0) Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1;; (*TAIR) AT1G54115.1 (e_value=0.0) | Symbols: ATCCX4, CCX4 | cation calcium exchanger 4 | chr1:20202118-20204052 FORWARD LENGTH=644;; (*ITAG) Solyc02g069710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00001095g0004.1 protein AED:0.24 eAED:0.27 QI:0|1|0.33|1|1|0.66|3|0|365; (*GB) gi|7705206|gb|AAB32591.2| (e_value=0.0) MybSt1 [Solanum tuberosum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=4e-31) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G47390.1 (e_value=1e-128) | Symbols: | myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365;; (*ITAG) Solyc08g078340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59322077-59325106 transcript_region:SL2.40ch08:59322077..59325106+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q2A9C4_BRAOL); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00023895g0006.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|192; (*GB) gi|373938247|dbj|BAL46495.1| (e_value=7e-71) hypothetical protein [Diospyros kaki];; (*SWP) sp|Q9ZUF7|LOR6_ARATH (e_value=6e-62) Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1;; (*TAIR) AT2G05910.1 (e_value=5e-63) | Symbols: | Protein of unknown function (DUF567) | chr2:2258512-2259376 REVERSE LENGTH=191;; (*ITAG) Solyc12g009130.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2448409-2450432 transcript_region:SL2.40ch12:2448409..2450432+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00023895g0005.1 protein AED:0.33 eAED:0.33 QI:10|1|1|1|1|1|9|387|246; (*GB) gi|12229948|sp|Q9XG77.1|PSA6_TOBAC (e_value=0.0) RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome subunit alpha-1;; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=0.0) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1;; (*TAIR) AT2G05840.1 (e_value=2e-170) | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234226-2236053 FORWARD LENGTH=246;; (*ITAG) Solyc12g009140.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2453127-2457231 transcript_region:SL2.40ch12:2453127..2457231- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- D2D307_GOSHI); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00005924g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|71 NbS00005924g0102.1 protein AED:0.07 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|190 NbS00006628g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|0.66|1|1|3|0|66; (*GB) gi|225428975|ref|XP_002264472.1| (e_value=4e-19) PREDICTED: mitotic checkpoint protein BUB3 [Vitis vinifera];; (*TAIR) AT1G49910.1 (e_value=2e-20) | Symbols: BUB3.2 | Transducin/WD40 repeat-like superfamily protein | chr1:18479025-18481271 FORWARD LENGTH=339;; (*ITAG) Solyc01g107160.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:86534713-86540689 transcript_region:SL2.40ch01:86534713..86540689+ go_terms:GO:0008017 functional_description:"Mitotic checkpoint protein BUB3 (AHRD V1 **-- B6UH61_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008017 NbS00017351g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|145; (*GB) gi|225454981|ref|XP_002278133.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100244287 [Vitis vinifera];; (*TAIR) AT5G61630.1 (e_value=3e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24773803-24774502 REVERSE LENGTH=147;; (*ITAG) Solyc05g052080.1.1 (e_value=5e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:61561446-61562009 transcript_region:SL2.40ch05:61561446..61562009- functional_description:"Unknown Protein (AHRD V1)"; NbS00017351g0007.1 protein AED:0.20 eAED:0.20 QI:86|1|1|1|0.71|0.87|8|405|248; (*GB) gi|7643790|gb|AAF65510.1| (e_value=3e-145) small GTP-binding protein [Capsicum annuum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=6e-139) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=5e-140) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc05g052070.2.1 (e_value=2e-147) genomic_reference:SL2.40ch05 gene_region:61556718-61560014 transcript_region:SL2.40ch05:61556718..61560014- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B9EN43_SALSA); contains Interpro domain(s) IPR002078 RNA polymerase sigma factor 54, interaction "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00017385g0005.1 protein AED:0.22 eAED:0.22 QI:279|1|1|1|0.72|0.75|12|189|389; (*GB) gi|224105457|ref|XP_002313817.1| (e_value=2e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4F0|DAR1_ARATH (e_value=2e-59) Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3;; (*TAIR) AT4G36860.1 (e_value=1e-60) | Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553;; (*ITAG) Solyc01g105180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85211483-85216375 transcript_region:SL2.40ch01:85211483..85216375+ go_terms:GO:0043130 functional_description:"LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR)"; GO:0043130 NbS00035089g0002.1 protein AED:0.27 eAED:0.27 QI:182|1|1|1|1|1|3|338|109; (*GB) gi|296084575|emb|CBI25596.3| (e_value=1e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G15580.2 (e_value=1e-17) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798612 FORWARD LENGTH=130;; (*ITAG) Solyc07g007170.2.1 (e_value=1e-53) genomic_reference:SL2.40ch07 gene_region:1927177-1928898 transcript_region:SL2.40ch07:1927177..1928898- functional_description:"Zinc finger family protein (AHRD V1 ***- D7L4D8_ARALY)"; NbS00007253g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|27529826|dbj|BAC53928.1| (e_value=1e-144) beta-1,3-glucanase-like protein [Nicotiana tabacum];; (*SWP) sp|Q06915|EA6_ARATH (e_value=4e-54) Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1;; (*TAIR) AT5G55180.2 (e_value=6e-100) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22388834-22390561 FORWARD LENGTH=465;; (*ITAG) Solyc12g014420.1.1 (e_value=2e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5390285-5392254 transcript_region:SL2.40ch12:5390285..5392254+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00043549g0001.1 protein AED:0.46 eAED:0.46 QI:341|0.8|0.66|0.83|0.8|0.66|6|0|358; (*GB) gi|147846688|emb|CAN80644.1| (e_value=1e-34) hypothetical protein VITISV_016915 [Vitis vinifera];; (*TAIR) AT1G68030.1 (e_value=6e-15) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:25500378-25501544 REVERSE LENGTH=314;; (*ITAG) Solyc10g080280.1.1 (e_value=2e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60925485-60926730 transcript_region:SL2.40ch10:60925485..60926730+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061568g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|492; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q9LIP3|C71BY_ARATH (e_value=1e-115) Cytochrome P450 71B37 OS=Arabidopsis thaliana GN=CYP71B37 PE=2 SV=2;; (*TAIR) AT3G26330.1 (e_value=7e-117) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc04g011680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00015696g0003.1 protein AED:0.46 eAED:0.48 QI:111|0.75|0.6|1|0.75|0.8|5|0|264; (*GB) gi|255587105|ref|XP_002534138.1| (e_value=3e-78) Protein YIF1A, putative [Ricinus communis];; (*SWP) sp|Q4FZQ0|YF1BB_XENLA (e_value=1e-13) Protein YIF1B-B OS=Xenopus laevis GN=yif1b-b PE=2 SV=1;; (*TAIR) AT1G30890.2 (e_value=2e-77) | Symbols: | Integral membrane HRF1 family protein | chr1:10994890-10995999 FORWARD LENGTH=269;; (*ITAG) Solyc09g063020.2.1 (e_value=3e-98) genomic_reference:SL2.40ch09 gene_region:56543579-56550726 transcript_region:SL2.40ch09:56543579..56550726- functional_description:"Transport protein yif1 (AHRD V1 **-- C1H1D3_PARBA); contains Interpro domain(s) IPR005578 Hrf1 "; NbS00016773g0015.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|19|599; (*GB) gi|225464343|ref|XP_002271970.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc08g069110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55384978-55387142 transcript_region:SL2.40ch08:55384978..55387142+ go_terms:GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-*- B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0010280 NbS00016773g0019.1 protein AED:0.44 eAED:0.67 QI:0|0.25|0.4|0.8|1|1|5|0|170; (*GB) gi|359476412|ref|XP_002272657.2| (e_value=2e-31) PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SJA6|RZ22A_ARATH (e_value=4e-30) Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1;; (*TAIR) AT2G24590.1 (e_value=3e-31) | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif and CCHC-type zinc finger domains containing protein | chr2:10449837-10450860 FORWARD LENGTH=196;; (*ITAG) Solyc08g069120.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:55393072-55397646 transcript_region:SL2.40ch08:55393072..55397646+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 7 (AHRD V1 *-*- B6U4H0_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00032208g0017.1 protein AED:0.23 eAED:0.23 QI:423|0.91|0.92|1|0.83|0.76|13|627|574; (*GB) gi|350540016|ref|NP_001234871.1| (e_value=0.0) auxin response factor 1 [Solanum lycopersicum];; (*SWP) sp|Q8L7G0|ARFA_ARATH (e_value=2e-124) Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2;; (*TAIR) AT1G59750.4 (e_value=4e-126) | Symbols: ARF1 | auxin response factor 1 | chr1:21980414-21984193 FORWARD LENGTH=660;; (*ITAG) Solyc01g103050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83494825-83500792 transcript_region:SL2.40ch01:83494825..83500792+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 1 (AHRD V1 **** D9I2J0_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005515,GO:0003700 NbS00032208g0024.1 protein AED:0.29 eAED:0.30 QI:0|0.92|0.93|1|0.85|0.93|15|348|634; (*GB) gi|225465267|ref|XP_002269253.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262667 [Vitis vinifera];; (*SWP) sp|Q9Y6D9|MD1L1_HUMAN (e_value=4e-16) Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2;; (*TAIR) AT5G49880.1 (e_value=0.0) | Symbols: | mitotic checkpoint family protein | chr5:20282305-20287775 FORWARD LENGTH=726;; (*ITAG) Solyc01g103040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83473073-83485225 transcript_region:SL2.40ch01:83473073..83485225- functional_description:"Mitotic checkpoint protein MAD1 (AHRD V1 *-*- A8JF64_CHLRE); contains Interpro domain(s) IPR008672 Mitotic checkpoint "; NbS00032208g0008.1 protein AED:0.31 eAED:0.53 QI:0|0|0|0.75|1|1|4|0|218; (*GB) gi|255573836|ref|XP_002527837.1| (e_value=3e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g103070.2.1 (e_value=8e-54) genomic_reference:SL2.40ch01 gene_region:83505849-83506798 transcript_region:SL2.40ch01:83505849..83506798+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032208g0026.1 protein AED:0.13 eAED:0.13 QI:165|0.92|0.93|1|0.92|0.93|15|224|985; (*GB) gi|225435997|ref|XP_002273102.1| (e_value=0.0) PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis vinifera];; (*SWP) sp|P42285|SK2L2_HUMAN (e_value=0.0) Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3;; (*TAIR) AT1G59760.1 (e_value=0.0) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00032208g0021.1 protein AED:0.22 eAED:0.22 QI:213|1|0.88|1|1|1|9|0|830; (*GB) gi|225465261|ref|XP_002268270.1| (e_value=2e-152) PREDICTED: uncharacterized protein LOC100247160 [Vitis vinifera];; (*SWP) sp|Q9SY74|C3H5_ARATH (e_value=2e-145) Zinc finger CCCH domain-containing protein 5 OS=Arabidopsis thaliana GN=At1g10320 PE=2 SV=2;; (*TAIR) AT1G10320.1 (e_value=1e-146) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=757;; (*ITAG) Solyc01g103090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83516637-83524905 transcript_region:SL2.40ch01:83516637..83524905- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00038432g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|141; (*GB) gi|2499966|sp|Q41228.1|PSAEA_NICSY (e_value=2e-59) RecName: Full=Photosystem I reaction center subunit IV A, chloroplastic; Short=PSI-E A; Contains: RecName: Full=Photosystem I reaction center subunit IV A isoform 2; Flags: Precursor;; (*SWP) sp|Q41228|PSAEA_NICSY (e_value=7e-61) Photosystem I reaction center subunit IV A, chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1;; (*TAIR) AT2G20260.1 (e_value=4e-36) | Symbols: PSAE-2 | photosystem I subunit E-2 | chr2:8736780-8737644 FORWARD LENGTH=145;; (*ITAG) Solyc09g063130.2.1 (e_value=5e-52) genomic_reference:SL2.40ch09 gene_region:56787134-56789056 transcript_region:SL2.40ch09:56787134..56789056+ go_terms:GO:0009536,GO:0009538 functional_description:"Photosystem I reaction center subunit IV A (AHRD V1 *-*- B6TH55_MAIZE); contains Interpro domain(s) IPR003375 Photosystem I reaction centre subunit IV/PsaE "; GO:0009536,GO:0009538 NbS00048970g0004.1 protein AED:0.00 eAED:0.00 QI:496|1|1|1|1|1|3|206|835; (*GB) gi|225441327|ref|XP_002276357.1| (e_value=0.0) PREDICTED: triacylglycerol lipase SDP1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LZA6|SDP1_ARATH (e_value=0.0) Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1;; (*TAIR) AT5G04040.1 (e_value=0.0) | Symbols: SDP1 | Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825;; (*ITAG) Solyc10g079410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60273615-60276422 transcript_region:SL2.40ch10:60273615..60276422+ go_terms:GO:0006629,GO:0008152,GO:0005525 functional_description:"Patatin-like phospholipase domain-containing protein c (AHRD V1 *--- B6K1H8_SCHJY); contains Interpro domain(s) IPR006689 ARF/SAR superfamily "; GO:0006629,GO:0008152,GO:0005525 NbS00029334g0012.1 protein AED:0.57 eAED:0.59 QI:0|0|0|0.66|0.5|0.33|3|0|275 NbS00029334g0011.1 protein AED:0.08 eAED:0.08 QI:347|0.66|0.75|1|0.66|0.5|4|614|350; (*GB) gi|147863867|emb|CAN81117.1| (e_value=4e-132) hypothetical protein VITISV_005903 [Vitis vinifera];; (*TAIR) AT4G25030.2 (e_value=3e-120) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344;; (*ITAG) Solyc08g075860.2.1 (e_value=2e-119) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00029334g0014.1 protein AED:0.14 eAED:0.14 QI:117|1|1|1|0.66|0.75|4|336|104; (*GB) gi|118484706|gb|ABK94223.1| (e_value=5e-54) unknown [Populus trichocarpa];; (*TAIR) AT5G57860.2 (e_value=5e-48) | Symbols: | Ubiquitin-like superfamily protein | chr5:23437991-23439087 FORWARD LENGTH=95;; (*ITAG) Solyc05g056060.2.1 (e_value=5e-55) genomic_reference:SL2.40ch05 gene_region:64601085-64608155 transcript_region:SL2.40ch05:64601085..64608155+ functional_description:"Ubiquitin-like protein (Fragment) (AHRD V1 *-*- A6N0B7_ORYSI); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00003179g0005.1 protein AED:0.17 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=2e-38) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=1e-34) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=1e-35) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc04g078430.1.1 (e_value=5e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60771681-60773069 transcript_region:SL2.40ch04:60771681..60773069+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- C3QXY1_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00003179g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.4|1|0.75|0.6|5|0|445; (*GB) gi|5777889|emb|CAB53515.1| (e_value=0.0) cysteine protease [Solanum tuberosum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=0.0) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=0.0) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc04g078540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60836302-60840029 transcript_region:SL2.40ch04:60836302..60840029- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00013822g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.42|1|0.66|0.85|7|0|435; (*GB) gi|359480811|ref|XP_002277358.2| (e_value=5e-177) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=1e-93) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=9e-143) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079250.2.1 (e_value=5e-141) genomic_reference:SL2.40ch04 gene_region:61361989-61363939 transcript_region:SL2.40ch04:61361989..61363939- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00013822g0012.1 protein AED:0.12 eAED:0.12 QI:116|0.8|0.90|1|0.8|1|11|416|679; (*GB) gi|296082437|emb|CBI21442.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66810.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | chr5:26672926-26676450 FORWARD LENGTH=750;; (*ITAG) Solyc02g090650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46767099-46775768 transcript_region:SL2.40ch02:46767099..46775768- functional_description:"Os10g0382300 protein (Fragment) (AHRD V1 ***- Q0IY13_ORYSJ); contains Interpro domain(s) IPR006595 CTLH, C-terminal to LisH motif "; NbS00013822g0013.1 protein AED:0.15 eAED:0.15 QI:0|1|0.71|1|1|0.85|7|0|404; (*GB) gi|359492618|ref|XP_002282366.2| (e_value=2e-173) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY37|PAT14_SOLTU (e_value=4e-93) Patatin-14 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=2e-154) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc02g090630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46756836-46759506 transcript_region:SL2.40ch02:46756836..46759506+ go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00033250g0001.1 protein AED:0.07 eAED:0.07 QI:2276|0|0.66|1|0|0.33|3|555|73; (*GB) gi|224143323|ref|XP_002324916.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25080.1 (e_value=6e-20) | Symbols: | Sas10/Utp3/C1D family | chr5:8643782-8646306 FORWARD LENGTH=217;; (*ITAG) Solyc06g064740.2.1 (e_value=1e-38) genomic_reference:SL2.40ch06 gene_region:36735855-36736521 transcript_region:SL2.40ch06:36735855..36736521+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008328g0013.1 protein AED:0.06 eAED:0.06 QI:179|1|0.75|1|1|1|4|0|405; (*GB) gi|21105736|gb|AAM34767.1|AF509867_1 (e_value=0.0) nam-like protein 4 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=7e-91) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10480.2 (e_value=7e-112) | Symbols: ANAC050, NAC050 | NAC domain containing protein 50 | chr3:3264410-3266781 FORWARD LENGTH=446;; (*ITAG) Solyc11g008010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2211124-2215951 transcript_region:SL2.40ch11:2211124..2215951- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00008328g0008.1 protein AED:0.33 eAED:0.34 QI:0|0.5|0.33|1|1|1|3|0|220; (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=7e-116) nam-like protein 9 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-98) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=3e-99) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc11g008000.1.1 (e_value=2e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2205263-2208572 transcript_region:SL2.40ch11:2205263..2208572- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012597g0110.1 protein AED:0.00 eAED:0.00 QI:333|1|1|1|1|1|3|585|240 NbS00012597g0112.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.44|0.88|0.62|0.77|9|0|429 NbS00012597g0114.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|3|0|112 NbS00009622g0006.1 protein AED:0.04 eAED:0.04 QI:58|1|0.66|1|1|1|3|0|238; (*GB) gi|255555176|ref|XP_002518625.1| (e_value=2e-133) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G05510.1 (e_value=2e-129) | Symbols: | Protein of unknown function (DUF1264) | chr1:1629527-1630690 FORWARD LENGTH=241;; (*ITAG) Solyc09g098120.2.1 (e_value=2e-163) genomic_reference:SL2.40ch09 gene_region:67297118-67298585 transcript_region:SL2.40ch09:67297118..67298585+ functional_description:"DUF1264 domain protein (AHRD V1 **-- B8NLT6_ASPFN); contains Interpro domain(s) IPR010686 Protein of unknown function DUF1264 "; NbS00009622g0021.1 protein AED:0.25 eAED:0.26 QI:0|0.45|0.5|1|0.36|0.33|12|158|674; (*GB) gi|356526627|ref|XP_003531918.1| (e_value=0.0) PREDICTED: auxin-induced protein PCNT115-like isoform 1 [Glycine max];; (*SWP) sp|P40691|A115_TOBAC (e_value=2e-180) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60710.1 (e_value=1e-171) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67192761-67196455 transcript_region:SL2.40ch09:67192761..67196455+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00009622g0029.1 protein AED:0.07 eAED:0.07 QI:80|1|1|1|1|1|5|312|351; (*GB) gi|728744|sp|P40691.1|A115_TOBAC (e_value=0.0) RecName: Full=Auxin-induced protein PCNT115;; (*SWP) sp|P40691|A115_TOBAC (e_value=0.0) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60710.1 (e_value=0.0) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67196720-67200070 transcript_region:SL2.40ch09:67196720..67200070+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00009622g0010.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|4|0|179; (*GB) gi|159517157|gb|ABW97846.1| (e_value=6e-44) MYC [Nicotiana tabacum];; (*ITAG) Solyc09g098110.2.1 (e_value=2e-30) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00009622g0030.1 protein AED:0.28 eAED:0.28 QI:547|0.66|0.5|1|0|0.5|4|350|123; (*GB) gi|224132084|ref|XP_002328181.1| (e_value=4e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25315.2 (e_value=5e-30) | Symbols: | Expressed protein | chr4:12951659-12952834 REVERSE LENGTH=108;; (*ITAG) Solyc01g086860.2.1 (e_value=4e-46) genomic_reference:SL2.40ch01 gene_region:73539705-73548284 transcript_region:SL2.40ch01:73539705..73548284+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009622g0007.1 protein AED:0.40 eAED:0.40 QI:266|1|0.75|1|0.66|1|4|0|202; (*GB) gi|321149987|gb|ADW66141.1| (e_value=1e-120) auxin-induced protein PCNT115 [Solanum nigrum];; (*SWP) sp|A2XRZ0|AKR2_ORYSI (e_value=1e-106) Probable aldo-keto reductase 2 OS=Oryza sativa subsp. indica GN=OsI_15387 PE=3 SV=1;; (*TAIR) AT1G60690.1 (e_value=4e-103) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22349892-22351668 REVERSE LENGTH=345;; (*ITAG) Solyc09g098090.2.1 (e_value=4e-113) genomic_reference:SL2.40ch09 gene_region:67260446-67263935 transcript_region:SL2.40ch09:67260446..67263935+ go_terms:GO:0004033 functional_description:"Aldo/keto reductase (AHRD V1 **** A2Q5A8_MEDTR); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbS00003142g0008.1 protein AED:0.12 eAED:0.12 QI:239|1|1|1|1|1|2|286|170; (*GB) gi|359497432|ref|XP_003635513.1| (e_value=4e-36) PREDICTED: uncharacterized protein LOC100261790 [Vitis vinifera];; (*TAIR) AT1G22160.1 (e_value=3e-28) | Symbols: | Protein of unknown function (DUF581) | chr1:7823238-7823774 FORWARD LENGTH=147;; (*ITAG) Solyc04g054760.2.1 (e_value=1e-51) genomic_reference:SL2.40ch04 gene_region:52350113-52351308 transcript_region:SL2.40ch04:52350113..52351308- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00003142g0007.1 protein AED:0.18 eAED:0.18 QI:0|1|0.9|1|1|1|10|0|510; (*GB) gi|14548099|sp|Q9SSV4.1|INO1_NICPA (e_value=0.0) RecName: Full=Inositol-3-phosphate synthase; Short=MIP synthase; AltName: Full=Myo-inositol 1-phosphate synthase; Short=IPS; Short=MI-1-P synthase;; (*SWP) sp|Q9SSV4|INO1_NICPA (e_value=0.0) Inositol-3-phosphate synthase OS=Nicotiana paniculata GN=INPS1 PE=2 SV=1;; (*TAIR) AT5G10170.1 (e_value=0.0) | Symbols: ATMIPS3, MIPS3 | myo-inositol-1-phosphate synthase 3 | chr5:3187538-3190161 REVERSE LENGTH=510;; (*ITAG) Solyc04g054740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52329390-52332579 transcript_region:SL2.40ch04:52329390..52332579+ go_terms:GO:0042802 functional_description:"Inositol-3-phosphate synthase (AHRD V1 ***- C4PW06_ARATH); contains Interpro domain(s) IPR002587 Myo-inositol-1-phosphate synthase "; GO:0042802 NbS00003142g0012.1 protein AED:0.43 eAED:0.66 QI:0|0|0|0.66|0|0|3|0|107 NbS00003142g0011.1 protein AED:0.39 eAED:0.62 QI:0|0|0|1|0|0|2|0|68 NbS00057138g0004.1 protein AED:0.19 eAED:0.19 QI:203|0.33|0.75|1|0.33|0.5|4|909|164 NbS00057138g0001.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|96; (*ITAG) Solyc01g079290.1.1 (e_value=8e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:70883001-70883855 transcript_region:SL2.40ch01:70883001..70883855- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 (AHRD V1 *-*- Q2HSK9_MEDTR); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00052417g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|225451875|ref|XP_002278738.1| (e_value=3e-77) PREDICTED: ocs element-binding factor 1 [Vitis vinifera];; (*TAIR) AT3G30530.1 (e_value=1e-50) | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper 42 | chr3:12139512-12140033 FORWARD LENGTH=173;; (*ITAG) Solyc02g089420.1.1 (e_value=4e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45834988-45835530 transcript_region:SL2.40ch02:45834988..45835530+ go_terms:GO:0046982,GO:0042803 functional_description:"BZip transcription factor (AHRD V1 ***- Q9AT29_PHAVU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbS00052417g0007.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|591; (*GB) gi|224112273|ref|XP_002332802.1| (e_value=0.0) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q9FWA4|GAUT9_ARATH (e_value=0.0) Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1;; (*TAIR) AT3G02350.1 (e_value=0.0) | Symbols: GAUT9 | galacturonosyltransferase 9 | chr3:479248-481178 FORWARD LENGTH=561;; (*ITAG) Solyc02g089440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45843022-45845794 transcript_region:SL2.40ch02:45843022..45845794+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00016998g0007.1 protein AED:0.15 eAED:0.15 QI:136|0.87|0.88|1|0.87|0.88|9|389|277; (*GB) gi|269969916|gb|ACZ54947.1| (e_value=7e-126) type 2 histone deacetylase c [Nicotiana tabacum];; (*SWP) sp|Q6V9I6|HDT1_SOLCH (e_value=4e-94) Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1;; (*TAIR) AT3G44750.2 (e_value=4e-33) | Symbols: HDA3 | histone deacetylase 3 | chr3:16298045-16299585 FORWARD LENGTH=242;; (*ITAG) Solyc10g085560.1.1 (e_value=4e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64003050-64006740 transcript_region:SL2.40ch10:64003050..64006740- go_terms:GO:0005622 functional_description:"Histone deacetylase 2a-like (AHRD V1 ***- Q2XTE1_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00016998g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|398; (*GB) gi|255539278|ref|XP_002510704.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYE5|E1312_ARATH (e_value=2e-91) Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1;; (*TAIR) AT4G29360.1 (e_value=1e-92) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:14451562-14453687 REVERSE LENGTH=534;; (*ITAG) Solyc12g040860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:40853563-40855400 transcript_region:SL2.40ch12:40853563..40855400- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00001602g0111.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.91|1|13|384|516 NbS00001602g0112.1 protein AED:0.28 eAED:0.32 QI:166|1|0.8|1|0.75|0.8|5|0|402 NbS00028164g0006.1 protein AED:0.60 eAED:0.64 QI:0|0.2|0|0.5|0.4|0.5|6|0|251; (*GB) gi|224460065|gb|ACN43583.1| (e_value=3e-129) nuclear cap-binding protein [Solanum tuberosum];; (*SWP) sp|Q9SIU2|NCBP1_ARATH (e_value=1e-61) Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2;; (*TAIR) AT2G13540.1 (e_value=1e-62) | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848;; (*ITAG) Solyc10g005530.2.1 (e_value=2e-130) genomic_reference:SL2.40ch10 gene_region:432555-449709 transcript_region:SL2.40ch10:432555..449709- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 1 (AHRD V1 *-** B0X1G0_CULQU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515,GO:0000339 NbS00051145g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|115 NbS00051145g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|106 NbS00051145g0005.1 protein AED:0.16 eAED:0.16 QI:213|1|1|1|1|1|2|115|57; (*ITAG) Solyc00g009020.2.1 (e_value=2e-23) genomic_reference:SL2.40ch00 gene_region:8742084-8746574 transcript_region:SL2.40ch00:8742084..8746574+ go_terms:GO:0008270,GO:0050897,GO:0005507 functional_description:"Mitochondrial ATP synthase (AHRD V1 ***- B6TLY8_MAIZE)"; GO:0008270,GO:0050897,GO:0005507 NbS00000539g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|216; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=3e-140) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-141) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=5e-136) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=1e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00000539g0011.1 protein AED:0.26 eAED:0.26 QI:194|1|1|1|0.5|0.33|3|738|69; (*GB) gi|282848240|gb|ADB02901.1| (e_value=1e-29) protein transport protein SEC61 subunit gamma [Jatropha curcas];; (*SWP) sp|Q9SW34|S61G1_ARATH (e_value=4e-30) Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1;; (*TAIR) AT5G50460.1 (e_value=3e-31) | Symbols: | secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69; NbS00000539g0017.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0|0|3|308|285; (*GB) gi|350540630|ref|NP_001234244.1| (e_value=1e-121) CONSTANS interacting protein 2a [Solanum lycopersicum];; (*SWP) sp|Q9SMP0|NFYC1_ARATH (e_value=4e-99) Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1;; (*TAIR) AT3G48590.1 (e_value=3e-100) | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234;; (*ITAG) Solyc06g072040.1.1 (e_value=2e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40788275-40788973 transcript_region:SL2.40ch06:40788275..40788973- go_terms:GO:0016563,GO:0003700 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0016563,GO:0003700 NbS00000539g0018.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.76|0.78|14|340|550; (*GB) gi|359491097|ref|XP_003634219.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH79|Y5064_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1;; (*TAIR) AT5G50530.1 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548;; (*ITAG) Solyc06g072050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40793725-40799556 transcript_region:SL2.40ch06:40793725..40799556- functional_description:"CBS domain containing protein (AHRD V1 ***- B6U1W0_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00000539g0015.1 protein AED:0.10 eAED:0.63 QI:0|0|0|1|0|0|2|0|86 NbS00013018g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|225424001|ref|XP_002283553.1| (e_value=2e-47) PREDICTED: uncharacterized protein LOC100244058 [Vitis vinifera];; (*TAIR) AT1G25400.2 (e_value=3e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1). | chr1:8911463-8912329 REVERSE LENGTH=288;; (*ITAG) Solyc05g009420.1.1 (e_value=6e-148) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:3585340-3586281 transcript_region:SL2.40ch05:3585340..3586281- functional_description:"Unknown Protein (AHRD V1)"; NbS00013018g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|384081618|ref|NP_001244913.1| (e_value=1e-157) adenylate isopentenyltransferase [Solanum lycopersicum];; (*SWP) sp|Q5GHF7|IPT_HUMLU (e_value=2e-106) Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1;; (*TAIR) AT1G68460.1 (e_value=8e-92) | Symbols: ATIPT1, IPT1 | isopentenyltransferase 1 | chr1:25668976-25670049 REVERSE LENGTH=357;; (*ITAG) Solyc05g009410.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3566128-3566979 transcript_region:SL2.40ch05:3566128..3566979+ go_terms:GO:0009824 functional_description:"tRNA dimethylallyltransferase (AHRD V1 **** D3L997_OENOE); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0009824 NbS00025744g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|507; (*GB) gi|300294858|gb|ADJ96636.1| (e_value=0.0) SGA [Solanum tuberosum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=7e-119) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT2G15480.2 (e_value=1e-112) | Symbols: UGT73B5 | UDP-glucosyl transferase 73B5 | chr2:6758817-6763398 FORWARD LENGTH=494;; (*ITAG) Solyc07g043410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54453341-54454789 transcript_region:SL2.40ch07:54453341..54454789- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00025744g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.42|1|1|1|7|0|630; (*GB) gi|357455513|ref|XP_003598037.1| (e_value=2e-162) Cellulose synthase [Medicago truncatula];; (*SWP) sp|Q8VYR4|CSLG2_ARATH (e_value=2e-84) Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1;; (*TAIR) AT4G24000.1 (e_value=1e-85) | Symbols: ATCSLG2, CSLG2 | cellulose synthase like G2 | chr4:12462142-12465471 FORWARD LENGTH=722;; (*ITAG) Solyc07g043390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54430095-54433036 transcript_region:SL2.40ch07:54430095..54433036+ go_terms:GO:0016759 functional_description:"Cellulose synthase family protein expressed (AHRD V1 **** Q339N6_ORYSJ); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00018607g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|0.5|0.4|5|0|480; (*GB) gi|224111880|ref|XP_002316010.1| (e_value=6e-180) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O48786|C734A_ARATH (e_value=4e-102) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=3e-103) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc05g011940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5169868-5171876 transcript_region:SL2.40ch05:5169868..5171876- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00018607g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|1|0.25|0.2|5|0|409; (*GB) gi|224111880|ref|XP_002316010.1| (e_value=3e-141) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O48786|C734A_ARATH (e_value=9e-70) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=7e-71) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc05g011970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5179822-5182337 transcript_region:SL2.40ch05:5179822..5182337+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018492g0007.1 protein AED:0.03 eAED:0.03 QI:0|0.83|0.57|1|1|1|7|292|248; (*GB) gi|225453321|ref|XP_002269907.1| (e_value=8e-112) PREDICTED: rac-like GTP-binding protein 7 [Vitis vinifera];; (*SWP) sp|Q41254|RAC9_GOSHI (e_value=3e-105) Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1;; (*TAIR) AT5G45970.1 (e_value=4e-106) | Symbols: ARAC2, RAC2, ROP7, ATRAC2, ATROP7 | RAC-like 2 | chr5:18643761-18645758 FORWARD LENGTH=201;; (*ITAG) Solyc01g088780.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:75285688-75289374 transcript_region:SL2.40ch01:75285688..75289374+ go_terms:GO:0003924 functional_description:"Rho-related GTP-binding protein RhoC (AHRD V1 **-- RHOC_PONAB); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00018492g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0|1|1|1|5|0|308; (*GB) gi|356522976|ref|XP_003530118.1| (e_value=2e-103) PREDICTED: cytochrome P450 734A6-like [Glycine max];; (*SWP) sp|B9X287|C7346_ORYSJ (e_value=3e-52) Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6 PE=2 SV=1;; (*TAIR) AT5G24910.1 (e_value=8e-73) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc01g088760.2.1 (e_value=7e-151) genomic_reference:SL2.40ch01 gene_region:75279011-75281183 transcript_region:SL2.40ch01:75279011..75281183+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018492g0010.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|104; (*GB) gi|255571063|ref|XP_002526482.1| (e_value=1e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G02160.1 (e_value=1e-15) | Symbols: | Cox19 family protein (CHCH motif) | chr1:410803-411383 FORWARD LENGTH=71;; (*ITAG) Solyc01g088770.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:75281496-75283385 transcript_region:SL2.40ch01:75281496..75283385- functional_description:"Os04g0665000 protein (Fragment) (AHRD V1 ***- Q0J999_ORYSJ); contains Interpro domain(s) IPR010625 CHCH "; NbS00004074g0015.1 protein AED:0.18 eAED:0.20 QI:0|0.54|0.66|0.91|0.81|0.75|12|156|580; (*GB) gi|224092216|ref|XP_002309513.1| (e_value=0.0) serine hydroxymethyltransferase 8 [Populus trichocarpa];; (*SWP) sp|P50433|GLYM_SOLTU (e_value=6e-174) Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G32520.2 (e_value=0.0) | Symbols: SHM3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529;; (*ITAG) Solyc12g095930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63366132-63370017 transcript_region:SL2.40ch12:63366132..63370017+ go_terms:GO:0006563,GO:0030170 functional_description:"Serine hydroxymethyltransferase (AHRD V1 ***- B9HDQ7_POPTR); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0006563,GO:0030170 NbS00004074g0013.1 protein AED:0.47 eAED:0.82 QI:0|0|0|1|1|1|3|0|123 NbS00048725g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.71|0.62|1|0.42|0.5|8|119|446; (*GB) gi|297745944|emb|CBI16000.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P33363|BGLX_ECOLI (e_value=1e-44) Periplasmic beta-glucosidase OS=Escherichia coli (strain K12) GN=bglX PE=1 SV=2;; (*TAIR) AT3G47000.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:17313811-17316539 REVERSE LENGTH=608;; (*ITAG) Solyc06g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:948619-955995 transcript_region:SL2.40ch06:948619..955995+ go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbS00025526g0006.1 protein AED:0.00 eAED:0.00 QI:52|1|1|1|0|0|2|0|162; (*GB) gi|296089979|emb|CBI39798.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=5e-23) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT3G44730.1 (e_value=4e-59) | Symbols: ATKP1, KP1 | kinesin-like protein 1 | chr3:16285888-16290852 FORWARD LENGTH=1087;; (*ITAG) Solyc07g065880.2.1 (e_value=2e-90) genomic_reference:SL2.40ch07 gene_region:64689631-64698266 transcript_region:SL2.40ch07:64689631..64698266- go_terms:GO:0005576,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005576,GO:0007018 NbS00025165g0014.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|1|1|1|4|109|376; (*GB) gi|255580564|ref|XP_002531106.1| (e_value=0.0) nutrient reservoir, putative [Ricinus communis];; (*SWP) sp|P07728|GLUA1_ORYSJ (e_value=2e-30) Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2;; (*TAIR) AT1G07750.1 (e_value=0.0) | Symbols: | RmlC-like cupins superfamily protein | chr1:2404300-2405863 REVERSE LENGTH=356;; (*ITAG) Solyc11g073200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53332788-53334317 transcript_region:SL2.40ch11:53332788..53334317- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00025165g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.55|0.88|0.87|0.88|9|0|262; (*GB) gi|297746144|emb|CBI16200.3| (e_value=5e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LQQ2|RA51D_ARATH (e_value=1e-73) DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana GN=RAD51D PE=2 SV=2;; (*TAIR) AT1G07745.2 (e_value=2e-75) | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D | chr1:2400797-2402492 REVERSE LENGTH=304;; (*ITAG) Solyc11g073220.1.1 (e_value=5e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53338301-53343617 transcript_region:SL2.40ch11:53338301..53343617+ go_terms:GO:0006259 functional_description:"Rad51 DNA recombination/repair protein (AHRD V1 **-- B7GAG1_PHATR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0006259 NbS00025165g0004.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|1|1|3|0|304; (*GB) gi|18204869|gb|AAH21564.1| (e_value=5e-109) TUBA1B protein [Homo sapiens];; (*SWP) sp|P14641|TBA2_MAIZE (e_value=1e-92) Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1;; (*TAIR) AT4G14960.2 (e_value=2e-90) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc12g088180.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62067338-62068021 transcript_region:SL2.40ch12:62067338..62068021+ go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin alpha-7 chain (AHRD V1 ***- B9IJV8_POPTR); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0005874,GO:0043234 NbS00025165g0009.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.66|1|1|3|0|96; (*ITAG) Solyc11g073230.1.1 (e_value=5e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029129g0005.1 protein AED:0.07 eAED:0.07 QI:159|0|0.5|1|0|0.5|2|0|752; (*GB) gi|225444712|ref|XP_002278292.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc07g041970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52037727-52040636 transcript_region:SL2.40ch07:52037727..52040636+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6SZ82_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00058009g0004.1 protein AED:0.24 eAED:0.24 QI:115|0.75|0.6|1|0.75|0.6|5|207|185; (*GB) gi|170773910|gb|ACB32231.1| (e_value=2e-86) nascent polypeptide associated complex alpha [Solanum chacoense];; (*SWP) sp|Q9M612|NACA_PINTA (e_value=3e-64) Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G12390.1 (e_value=6e-54) | Symbols: | Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203;; (*ITAG) Solyc10g081030.1.1 (e_value=3e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61534917-61538284 transcript_region:SL2.40ch10:61534917..61538284+ go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6T903_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00023603g0005.1 protein AED:0.12 eAED:0.12 QI:705|0.33|0.25|1|0|0|4|0|238; (*GB) gi|350539407|ref|NP_001234136.1| (e_value=9e-54) histidine decarboxylase [Solanum lycopersicum];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=3e-55) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=3e-44) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g066220.2.1 (e_value=3e-61) genomic_reference:SL2.40ch08 gene_region:51900799-51904475 transcript_region:SL2.40ch08:51900799..51904475+ go_terms:GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 *-*- A7GHE9_CLOBL); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0019752,GO:0030170 NbS00023455g0013.1 protein AED:0.32 eAED:0.45 QI:0|0.2|0.16|1|0.2|0.33|6|0|305; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*TAIR) AT5G65960.1 (e_value=2e-74) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=1e-123) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00023455g0006.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|62; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=5e-16) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*TAIR) AT5G65960.1 (e_value=4e-16) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00010174g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|126; (*GB) gi|76161012|gb|ABA40469.1| (e_value=5e-70) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q9FDZ9|RL212_ARATH (e_value=3e-65) 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1;; (*TAIR) AT1G57860.1 (e_value=2e-66) | Symbols: | Translation protein SH3-like family protein | chr1:21430034-21430827 REVERSE LENGTH=164;; (*ITAG) Solyc10g080590.1.1 (e_value=4e-74) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61136858-61138249 transcript_region:SL2.40ch10:61136858..61138249- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00010174g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.85|1|1|0.85|7|0|297; (*GB) gi|255552073|ref|XP_002517081.1| (e_value=3e-177) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*SWP) sp|Q43468|STIP_SOYBN (e_value=5e-19) Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1;; (*TAIR) AT1G04190.1 (e_value=4e-170) | Symbols: TPR3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1106617-1108557 REVERSE LENGTH=328;; (*ITAG) Solyc09g082540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63657303-63663270 transcript_region:SL2.40ch09:63657303..63663270+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 28 (AHRD V1 *--- TTC28_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00010174g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|81 NbS00038870g0026.1 protein AED:0.12 eAED:0.12 QI:72|0.90|0.91|1|0.81|0.75|12|297|369; (*GB) gi|225447779|ref|XP_002265691.1| (e_value=1e-102) PREDICTED: uncharacterized protein LOC100245237 [Vitis vinifera];; (*TAIR) AT1G15200.1 (e_value=9e-80) | Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=423;; (*ITAG) Solyc01g104560.2.1 (e_value=1e-164) genomic_reference:SL2.40ch01 gene_region:84787175-84791575 transcript_region:SL2.40ch01:84787175..84791575+ functional_description:"Pinin/SDK/memA protein (AHRD V1 ***- A2Q483_MEDTR); contains Interpro domain(s) IPR006786 Pinin/SDK/memA protein "; NbS00038870g0021.1 protein AED:0.22 eAED:0.22 QI:118|0.6|0.5|0.83|1|1|6|0|224; (*GB) gi|29468343|gb|AAO85511.1| (e_value=1e-132) CSN8 [Nicotiana benthamiana];; (*SWP) sp|P43255|CSN8_ARATH (e_value=1e-91) COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1;; (*TAIR) AT4G14110.1 (e_value=1e-92) | Symbols: COP9, CSN8, FUS7, EMB143 | COP9 signalosome, subunit CSN8 | chr4:8133049-8134867 REVERSE LENGTH=197;; (*ITAG) Solyc01g104600.2.1 (e_value=5e-125) genomic_reference:SL2.40ch01 gene_region:84809272-84813588 transcript_region:SL2.40ch01:84809272..84813588+ go_terms:GO:0005515,GO:0004222 functional_description:"COP9 signalosome complex subunit 8 (AHRD V1 ***- B6SQ52_MAIZE); contains Interpro domain(s) IPR019280 COP9 signalosome, subunit CSN8 "; GO:0005515,GO:0004222 NbS00038870g0020.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|291|168; (*GB) gi|225447781|ref|XP_002265790.1| (e_value=3e-80) PREDICTED: uncharacterized protein LOC100267543 [Vitis vinifera];; (*TAIR) AT2G01080.1 (e_value=7e-71) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231;; (*ITAG) Solyc01g104580.2.1 (e_value=4e-99) genomic_reference:SL2.40ch01 gene_region:84798176-84801154 transcript_region:SL2.40ch01:84798176..84801154+ functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 ***- Q10NQ5_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00038870g0025.1 protein AED:0.00 eAED:0.00 QI:33|1|1|1|1|1|2|74|83 NbS00038870g0030.1 protein AED:0.14 eAED:0.14 QI:19|1|1|1|1|1|5|414|389; (*GB) gi|37625023|gb|AAQ96335.1| (e_value=0.0) ribosomal protein L3A [Nicotiana tabacum];; (*SWP) sp|P35684|RL3_ORYSJ (e_value=0.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G61580.1 (e_value=0.0) | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720833-22722402 REVERSE LENGTH=390;; (*ITAG) Solyc01g104590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84802263-84805701 transcript_region:SL2.40ch01:84802263..84805701- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3 (AHRD V1 ***- Q6SKP4_SOLLC); contains Interpro domain(s) IPR019926 Ribosomal protein L3, conserved site IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00038870g0029.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.6|1|0.75|0.6|5|208|654; (*GB) gi|225455018|ref|XP_002279662.1| (e_value=6e-171) PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera];; (*SWP) sp|P0CP17|NDC80_CRYNB (e_value=5e-16) Probable kinetochore protein NDC80 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=NDC80 PE=3 SV=1;; (*TAIR) AT3G54630.1 (e_value=2e-132) | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). | chr3:20221195-20222901 REVERSE LENGTH=568;; (*ITAG) Solyc01g104570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84791751-84795927 transcript_region:SL2.40ch01:84791751..84795927- functional_description:"Kinetochore protein ndc80 (AHRD V1 *-*- B6K5V0_SCHJY); contains Interpro domain(s) IPR005550 Kinetochore protein Ndc80 "; NbS00038870g0031.1 protein AED:0.48 eAED:0.48 QI:0|0.14|0|0.5|0.71|0.62|8|0|575; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-56) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-57) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011540.1.1 (e_value=5e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00038870g0033.1 protein AED:0.24 eAED:0.30 QI:36|0|0|0.5|0|0|6|0|266; (*ITAG) Solyc01g008430.1.1 (e_value=3e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2514786-2517198 transcript_region:SL2.40ch01:2514786..2517198- functional_description:"Unknown Protein (AHRD V1)"; NbS00046292g0006.1 protein AED:0.11 eAED:0.15 QI:43|0.33|0|1|0|0.25|4|0|291; (*GB) gi|156763848|emb|CAO99126.1| (e_value=4e-127) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=4e-98) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37990.1 (e_value=4e-78) | Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 | elicitor-activated gene 3-2 | chr4:17855964-17857388 FORWARD LENGTH=359;; (*ITAG) Solyc11g011330.1.1 (e_value=3e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00014854g0009.1 protein AED:0.11 eAED:0.11 QI:61|1|0.5|1|0|0.5|2|0|63 NbS00014854g0007.1 protein AED:0.17 eAED:0.17 QI:286|1|1|1|0.66|0.85|7|457|477; (*GB) gi|224108371|ref|XP_002314825.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=1e-176) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G71140.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr1:26824762-26826748 FORWARD LENGTH=485;; (*ITAG) Solyc02g063260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29900789-29904504 transcript_region:SL2.40ch02:29900789..29904504- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWCT); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00032831g0015.1 protein AED:0.07 eAED:0.07 QI:500|0.8|0.83|1|0.4|0.33|6|1168|299; (*GB) gi|297741106|emb|CBI31837.3| (e_value=3e-109) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WUQ1|BAG1_ARATH (e_value=4e-87) BAG family molecular chaperone regulator 1 OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT5G52060.1 (e_value=3e-88) | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene 1 | chr5:21152449-21153741 REVERSE LENGTH=342;; (*ITAG) Solyc06g035720.2.1 (e_value=5e-152) genomic_reference:SL2.40ch06 gene_region:21506013-21509381 transcript_region:SL2.40ch06:21506013..21509381- go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00017260g0007.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=1e-160) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT5G22070.1 (e_value=5e-145) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:7308255-7309343 FORWARD LENGTH=362;; (*ITAG) Solyc04g009760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:3075183-3076217 transcript_region:SL2.40ch04:3075183..3076217- go_terms:GO:0005515 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00017260g0021.1 protein AED:0.20 eAED:0.20 QI:82|0.66|0.5|0.75|0.66|0.75|4|0|196; (*GB) gi|225464400|ref|XP_002268110.1| (e_value=1e-73) PREDICTED: exocyst complex component 7 [Vitis vinifera];; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=2e-14) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT5G03540.1 (e_value=7e-75) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc04g009740.2.1 (e_value=1e-86) genomic_reference:SL2.40ch04 gene_region:3062113-3072311 transcript_region:SL2.40ch04:3062113..3072311- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_YARLI); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00017260g0018.1 protein AED:0.21 eAED:0.21 QI:0|1|0.87|1|0.85|0.87|8|453|433; (*GB) gi|296084459|emb|CBI25018.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=5e-33) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT5G03540.1 (e_value=0.0) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc11g006620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00017260g0013.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|1|2|0|207; (*GB) gi|11072008|gb|AAG28887.1|AC008113_3 (e_value=5e-69) F12A21.7 [Arabidopsis thaliana];; (*SWP) sp|Q9SS90|RGLG1_ARATH (e_value=2e-50) E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1;; (*TAIR) AT1G67800.4 (e_value=1e-52) | Symbols: | Copine (Calcium-dependent phospholipid-binding protein) family | chr1:25421029-25423237 REVERSE LENGTH=433;; (*ITAG) Solyc03g111870.2.1 (e_value=2e-61) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00017260g0019.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|258; (*GB) gi|225450248|ref|XP_002268686.1| (e_value=6e-120) PREDICTED: uncharacterized protein ynbD [Vitis vinifera];; (*SWP) sp|P76093|YNBD_ECOLI (e_value=3e-12) Uncharacterized protein ynbD OS=Escherichia coli (strain K12) GN=ynbD PE=3 SV=1;; (*ITAG) Solyc04g009700.2.1 (e_value=1e-153) genomic_reference:SL2.40ch04 gene_region:3045839-3049663 transcript_region:SL2.40ch04:3045839..3049663+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase catalytic domain containing protein expressed (AHRD V1 ***- Q2QXL1_ORYSJ); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00017260g0020.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|486; (*GB) gi|224117828|ref|XP_002317678.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04893|AGLU_SPIOL (e_value=0.0) Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT5G11720.1 (e_value=0.0) | Symbols: | Glycosyl hydrolases family 31 protein | chr5:3776840-3780025 FORWARD LENGTH=902;; (*ITAG) Solyc04g009630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3009140-3012779 transcript_region:SL2.40ch04:3009140..3012779+ go_terms:GO:0004558 functional_description:"Alpha-glucosidase 1 (AHRD V1 **** O22444_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00017260g0004.1 protein AED:0.30 eAED:0.68 QI:0|0|0|1|1|1|2|0|166; (*GB) gi|224133728|ref|XP_002321646.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=7e-33) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=5e-34) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc03g111870.2.1 (e_value=8e-43) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbC25963383g0003.1 protein AED:0.08 eAED:0.08 QI:284|0.5|0.6|0.6|0.75|0.6|5|0|194; (*GB) gi|225428745|ref|XP_002285039.1| (e_value=4e-98) PREDICTED: nodulation protein H [Vitis vinifera];; (*TAIR) AT2G15730.1 (e_value=1e-88) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc10g050870.1.1 (e_value=2e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46492478-46495919 transcript_region:SL2.40ch10:46492478..46495919- functional_description:"Unknown Protein (AHRD V1)"; NbS00010536g0009.1 protein AED:0.33 eAED:0.33 QI:0|0.75|0.66|1|0.87|1|9|0|425; (*GB) gi|33667912|gb|AAQ24535.1| (e_value=0.0) MYST-type acetyltransferase [Solanum chacoense];; (*SWP) sp|Q9FLF7|MYST1_ARATH (e_value=0.0) Probable MYST-like histone acetyltransferase 1 OS=Arabidopsis thaliana GN=HAG4 PE=2 SV=1;; (*TAIR) AT5G64610.1 (e_value=0.0) | Symbols: HAM1 | histone acetyltransferase of the MYST family 1 | chr5:25828333-25830503 REVERSE LENGTH=445;; (*ITAG) Solyc11g013520.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6585029-6595031 transcript_region:SL2.40ch11:6585029..6595031- go_terms:GO:0046972 functional_description:"Histone acetyltransferase (AHRD V1 **** B9H794_POPTR); contains Interpro domain(s) IPR002717 MOZ/SAS-like protein "; GO:0046972 NbS00029479g0011.1 protein AED:0.02 eAED:0.02 QI:169|1|0.5|1|1|1|2|0|77 NbS00029479g0014.1 protein AED:0.26 eAED:0.26 QI:1143|0.5|0.66|1|0.5|0.33|3|0|348; (*GB) gi|126567463|dbj|BAF48330.1| (e_value=0.0) iron transporter protein IRT1 [Nicotiana tabacum];; (*SWP) sp|Q38856|IRT1_ARATH (e_value=2e-148) Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2;; (*TAIR) AT4G19690.2 (e_value=2e-149) | Symbols: IRT1 | iron-regulated transporter 1 | chr4:10707487-10708723 FORWARD LENGTH=347;; (*ITAG) Solyc02g069210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33739071-33741696 transcript_region:SL2.40ch02:33739071..33741696- go_terms:GO:0046873 functional_description:"Metal ion transporter-like protein (AHRD V1 **** B4YHA7_HORVU); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0046873 NbS00029479g0003.1 protein AED:0.66 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|552; (*GB) gi|297745567|emb|CBI40732.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C8R0|PP416_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1;; (*TAIR) AT5G43820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17618948-17620588 FORWARD LENGTH=546;; (*ITAG) Solyc12g014000.1.1 (e_value=7e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4840081-4841547 transcript_region:SL2.40ch12:4840081..4841547+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L401_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029479g0013.1 protein AED:0.84 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|67 NbS00001525g0001.1 protein AED:0.15 eAED:0.30 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|225441803|ref|XP_002277885.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera];; (*TAIR) AT3G57500.1 (e_value=4e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21281980-21282351 FORWARD LENGTH=123;; (*ITAG) Solyc04g015540.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:5774950-5775312 transcript_region:SL2.40ch04:5774950..5775312- functional_description:"Unknown Protein (AHRD V1)"; NbS00001525g0128.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.66|3|0|294 NbS00001525g0130.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0.2|1|0.5|0.4|5|176|270 NbS00001525g0121.1 protein AED:0.18 eAED:0.18 QI:3|0.62|0.22|1|0.75|0.77|9|0|561 NbS00001525g0129.1 protein AED:0.23 eAED:0.23 QI:0|0.80|0.68|1|0.57|0.72|22|0|1014 NbS00001525g0103.1 protein AED:0.19 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|108 NbS00001525g0125.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|0.5|0.66|3|444|892 NbS00032283g0001.1 protein AED:0.27 eAED:0.27 QI:322|1|0.5|1|0|0.5|2|0|439; (*GB) gi|356546116|ref|XP_003541477.1| (e_value=1e-161) PREDICTED: uncharacterized protein LOC100800468 [Glycine max];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=2e-23) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=7e-137) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc12g009640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2917443-2920250 transcript_region:SL2.40ch12:2917443..2920250+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00032283g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|69|263; (*GB) gi|225445607|ref|XP_002285432.1| (e_value=5e-44) PREDICTED: repetitive proline-rich cell wall protein 1 [Vitis vinifera];; (*SWP) sp|Q00451|PRF1_SOLLC (e_value=2e-17) 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1;; (*TAIR) AT2G10940.2 (e_value=3e-40) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:4311160-4312035 REVERSE LENGTH=291;; (*ITAG) Solyc12g009650.1.1 (e_value=8e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2922153-2923552 transcript_region:SL2.40ch12:2922153..2923552- go_terms:GO:0005199,GO:0006869 functional_description:"Proline rich protein (Fragment) (AHRD V1 *--- P93274_MALDO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005199,GO:0006869 NbS00024924g0004.1 protein AED:0.14 eAED:0.15 QI:36|0.7|0.54|0.90|0.7|0.63|11|0|708; (*GB) gi|225463881|ref|XP_002263430.1| (e_value=0.0) PREDICTED: ABC transporter G family member 22-like [Vitis vinifera];; (*SWP) sp|Q93YS4|AB22G_ARATH (e_value=0.0) ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1;; (*TAIR) AT5G06530.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:1990060-1994605 REVERSE LENGTH=751;; (*ITAG) Solyc04g070970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55373820-55377979 transcript_region:SL2.40ch04:55373820..55377979- go_terms:GO:0017127 functional_description:"ABC transporter G family member 22 (AHRD V1 **** AB22G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017127 NbS00024061g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.87|0.77|1|0.87|0.77|9|399|578; (*GB) gi|327344117|gb|AEA50963.1| (e_value=3e-170) putative PDF1-interacting protein 1, partial [Gossypium barbadense];; (*SWP) sp|Q8R317|UBQL1_MOUSE (e_value=5e-37) Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1;; (*TAIR) AT2G17200.1 (e_value=3e-161) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc02g082800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41021911-41031456 transcript_region:SL2.40ch02:41021911..41031456- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00032956g0001.1 protein AED:0.28 eAED:0.41 QI:0|0|0|1|1|1|2|0|228; (*GB) gi|225445146|ref|XP_002280643.1| (e_value=1e-41) PREDICTED: E3 ubiquitin-protein ligase ATL42 [Vitis vinifera];; (*SWP) sp|Q9SL78|ATL12_ARATH (e_value=2e-32) Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=2 SV=1;; (*TAIR) AT2G20030.1 (e_value=1e-33) | Symbols: | RING/U-box superfamily protein | chr2:8647813-8648985 FORWARD LENGTH=390;; (*ITAG) Solyc12g007320.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1709310-1710455 transcript_region:SL2.40ch12:1709310..1710455- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00046966g0006.1 protein AED:0.13 eAED:0.13 QI:378|0.8|0.90|1|0.7|0.63|11|541|296; (*GB) gi|296081759|emb|CBI20764.3| (e_value=1e-107) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G10710.3 (e_value=2e-84) | Symbols: | INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464). | chr5:3379619-3382648 FORWARD LENGTH=298;; (*ITAG) Solyc08g077520.2.1 (e_value=8e-143) genomic_reference:SL2.40ch08 gene_region:58670594-58678386 transcript_region:SL2.40ch08:58670594..58678386- go_terms:GO:0005634 functional_description:"Centromere protein O (AHRD V1 *--- CENPO_CHICK); contains Interpro domain(s) IPR018464 Centromere protein Cenp-O "; GO:0005634 NbS00046966g0007.1 protein AED:0.24 eAED:0.24 QI:125|0.5|0.57|1|0.83|1|7|2452|296; (*GB) gi|255552942|ref|XP_002517514.1| (e_value=5e-55) Placental protein 11 precursor, putative [Ricinus communis];; (*SWP) sp|Q1LUM3|ENDUC_DANRE (e_value=1e-18) Poly(U)-specific endoribonuclease-C OS=Danio rerio GN=endouc PE=2 SV=1;; (*TAIR) AT4G17100.1 (e_value=3e-56) | Symbols: | CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434;; (*ITAG) Solyc08g077510.2.1 (e_value=2e-71) genomic_reference:SL2.40ch08 gene_region:58665382-58670129 transcript_region:SL2.40ch08:58665382..58670129+ go_terms:GO:0004521,GO:0003723 functional_description:"Poly(U)-specific endoribonuclease-A (AHRD V1 **** ENDUA_XENLA); contains Interpro domain(s) IPR018998 Endoribonuclease XendoU "; GO:0004521,GO:0003723 NbS00008734g0004.1 protein AED:0.29 eAED:0.33 QI:3|0.71|0.62|1|0.85|0.75|8|0|282; (*GB) gi|255548527|ref|XP_002515320.1| (e_value=1e-111) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G47900.2 (e_value=6e-70) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394161 FORWARD LENGTH=359;; (*ITAG) Solyc06g084590.2.1 (e_value=2e-145) genomic_reference:SL2.40ch06 gene_region:45950566-45959677 transcript_region:SL2.40ch06:45950566..45959677+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_HUMAN); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00010233g0105.1 protein AED:0.15 eAED:0.18 QI:0|0.62|0.70|0.94|0.81|0.82|17|359|692 NbS00010233g0107.1 protein AED:0.22 eAED:0.22 QI:123|0.5|0.33|1|0.5|0.66|3|0|163 NbS00010233g0106.1 protein AED:0.34 eAED:0.35 QI:19|1|0.5|1|1|0.5|2|71|36 NbS00020103g0012.1 protein AED:0.20 eAED:0.20 QI:194|1|0.91|1|1|1|12|0|446; (*GB) gi|351727457|ref|NP_001238441.1| (e_value=0.0) sialyltransferase-like [Glycine max];; (*SWP) sp|Q11205|SIA4B_RAT (e_value=3e-14) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Rattus norvegicus GN=St3gal2 PE=2 SV=1;; (*TAIR) AT3G48820.1 (e_value=0.0) | Symbols: | Glycosyltransferase family 29 (sialyltransferase) family protein | chr3:18100106-18102852 REVERSE LENGTH=440;; (*ITAG) Solyc03g097780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53556816-53563041 transcript_region:SL2.40ch03:53556816..53563041- go_terms:GO:0030173 functional_description:"Alpha-2 3-sialyltransferase (AHRD V1 *-*- Q702S2_TAKRU); contains Interpro domain(s) IPR001675 Glycosyl transferase, family 29 "; GO:0030173 NbS00020103g0010.1 protein AED:0.20 eAED:0.24 QI:1607|0.66|0.75|1|0.33|0.25|4|293|103 NbS00020103g0008.1 protein AED:0.28 eAED:0.43 QI:31|0.75|0.8|1|1|1|5|0|191; (*GB) gi|359488447|ref|XP_002274610.2| (e_value=5e-62) PREDICTED: translocon-associated protein subunit beta isoform 2 [Vitis vinifera];; (*TAIR) AT5G14030.4 (e_value=2e-57) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc03g097750.2.1 (e_value=6e-87) genomic_reference:SL2.40ch03 gene_region:53549599-53552392 transcript_region:SL2.40ch03:53549599..53552392+ go_terms:GO:0005515,GO:0005048 functional_description:"Translocon-associated protein subunit beta (AHRD V1 *-*- D3BIF7_POLPA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0005515,GO:0005048 NbS00015427g0005.1 protein AED:0.10 eAED:0.10 QI:220|1|1|1|0.8|0.83|6|474|335; (*GB) gi|296089321|emb|CBI39093.3| (e_value=2e-163) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XZZ3|BAHL1_ORYSJ (e_value=2e-137) Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. japonica GN=Os03g0650900 PE=2 SV=1;; (*TAIR) AT2G38920.1 (e_value=2e-138) | Symbols: | SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related | chr2:16248420-16250585 REVERSE LENGTH=335;; (*ITAG) Solyc11g045230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37026095-37031319 transcript_region:SL2.40ch11:37026095..37031319+ go_terms:GO:0008270 functional_description:"Tripartite motif-containing 22 (Predicted) (AHRD V1 *-*- B0VXD4_CALJA); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0008270 NbS00056673g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.88|0.72|1|0.70|0.72|18|103|1221; (*GB) gi|350535000|ref|NP_001234426.1| (e_value=0.0) kinesin related protein [Solanum lycopersicum];; (*SWP) sp|Q9NS87|KIF15_HUMAN (e_value=1e-67) Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G20150.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr3:7031412-7036499 FORWARD LENGTH=1114;; (*ITAG) Solyc07g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64289272-64295444 transcript_region:SL2.40ch07:64289272..64295444- go_terms:GO:0008574 functional_description:"Kinesin motor family protein (AHRD V1 *-** D7LAW5_ARALY); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0008574 NbS00018429g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.75|0.6|1|1|1|5|0|293; (*GB) gi|224084676|ref|XP_002307384.1| (e_value=3e-130) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78150.2 (e_value=7e-107) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29404996-29406341 FORWARD LENGTH=274;; (*ITAG) Solyc04g073970.2.1 (e_value=9e-171) genomic_reference:SL2.40ch04 gene_region:57593055-57595973 transcript_region:SL2.40ch04:57593055..57595973+ functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbS00040990g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.75|1|1|1|1|5|0|154; (*GB) gi|454265|emb|CAA50549.1| (e_value=5e-99) FBP3 [Petunia x hybrida];; (*SWP) sp|Q07474|MADS2_PETHY (e_value=6e-100) Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1;; (*TAIR) AT5G20240.1 (e_value=5e-72) | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208;; (*ITAG) Solyc06g059970.2.1 (e_value=7e-98) genomic_reference:SL2.40ch06 gene_region:34286205-34289235 transcript_region:SL2.40ch06:34286205..34289235- go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00012027g0012.1 protein AED:0.01 eAED:0.01 QI:394|0.33|0.75|0.75|0.33|0.5|4|504|625; (*GB) gi|6691125|gb|AAF24497.1|AF213696_1 (e_value=0.0) FH protein NFH2 [Nicotiana tabacum];; (*SWP) sp|Q9SE97|FH1_ARATH (e_value=2e-72) Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1;; (*TAIR) AT3G25500.1 (e_value=2e-73) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc09g042740.2.1 (e_value=2e-95) genomic_reference:SL2.40ch09 gene_region:29840544-29844761 transcript_region:SL2.40ch09:29840544..29844761+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00012027g0011.1 protein AED:0.18 eAED:0.18 QI:390|1|1|1|0.75|0.8|5|1122|150; (*GB) gi|359495428|ref|XP_002274797.2| (e_value=8e-21) PREDICTED: uncharacterized protein LOC100251197 [Vitis vinifera];; (*TAIR) AT5G12230.1 (e_value=5e-13) | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3953915-3955285 REVERSE LENGTH=221;; (*ITAG) Solyc06g082900.2.1 (e_value=6e-29) genomic_reference:SL2.40ch06 gene_region:44822651-44825024 transcript_region:SL2.40ch06:44822651..44825024+ functional_description:"Genomic DNA chromosome 5 P1 clone MXC9 (AHRD V1 *-*- Q9FMP0_ARATH)"; NbS00012027g0016.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.6|1|0.5|0.4|5|0|631; (*GB) gi|296083571|emb|CBI23562.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT5G48380.1 (e_value=0.0) | Symbols: BIR1 | BAK1-interacting receptor-like kinase 1 | chr5:19604584-19606532 REVERSE LENGTH=620;; (*ITAG) Solyc06g082920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44836567-44839100 transcript_region:SL2.40ch06:44836567..44839100- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00054376g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|453; (*GB) gi|357511423|ref|XP_003626000.1| (e_value=2e-171) Pentatricopeptide repeat protein [Medicago truncatula];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=4e-90) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=3e-91) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g009500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3492431-3494020 transcript_region:SL2.40ch06:3492431..3494020+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00004598g0006.1 protein AED:0.02 eAED:0.02 QI:166|1|0.66|1|0.5|0|3|0|87; (*GB) gi|255566514|ref|XP_002524242.1| (e_value=5e-16) zinc ion binding protein, putative [Ricinus communis];; (*ITAG) Solyc03g079910.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:45336512-45340788 transcript_region:SL2.40ch03:45336512..45340788- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00004598g0005.1 protein AED:0.42 eAED:0.56 QI:17|0|0|0.75|0.66|0.75|4|0|119; (*GB) gi|147768077|emb|CAN69394.1| (e_value=3e-27) hypothetical protein VITISV_021011 [Vitis vinifera];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=9e-23) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=7e-24) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc05g052910.2.1 (e_value=2e-29) genomic_reference:SL2.40ch05 gene_region:62226323-62233083 transcript_region:SL2.40ch05:62226323..62233083- go_terms:GO:0008270 functional_description:"Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00012071g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|243; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=4e-119) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=3e-109) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=2e-110) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=5e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00012071g0005.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=8e-105) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT3G16330.1 (e_value=6e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5535263-5535880 FORWARD LENGTH=205;; (*ITAG) Solyc06g066500.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38134125-38134568 transcript_region:SL2.40ch06:38134125..38134568- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 ***- Q9FQZ6_TOBAC)"; NbS00012071g0022.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|0|0.33|3|0|142; (*ITAG) Solyc00g212260.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19159730-19164604 transcript_region:SL2.40ch00:19159730..19164604+ functional_description:"GH3 family protein (AHRD V1 *-*- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; NbS00012071g0023.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|1|1|2|17|84 NbS00012071g0024.1 protein AED:0.97 eAED:0.97 QI:0|0|0|0.33|0.5|0.66|3|0|217 NbS00012071g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|236; (*GB) gi|297743213|emb|CBI36080.3| (e_value=3e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82632|GATA9_ARATH (e_value=2e-46) GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1;; (*TAIR) AT4G32890.1 (e_value=2e-47) | Symbols: GATA9 | GATA transcription factor 9 | chr4:15875598-15876615 FORWARD LENGTH=308;; (*ITAG) Solyc03g120890.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:63175276-63176950 transcript_region:SL2.40ch03:63175276..63176950- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00012071g0006.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=3e-106) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=4e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00012071g0020.1 protein AED:0.21 eAED:0.21 QI:218|1|1|1|0.84|0.78|14|361|718; (*GB) gi|255549888|ref|XP_002515995.1| (e_value=0.0) hypothetical protein RCOM_1491960 [Ricinus communis];; (*TAIR) AT5G06220.2 (e_value=1e-41) | Symbols: | LETM1-like protein | chr5:1880049-1885366 FORWARD LENGTH=909;; (*ITAG) Solyc06g066550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38192184-38198696 transcript_region:SL2.40ch06:38192184..38198696+ functional_description:"MRS7 family protein (AHRD V1 *--- B6QVZ9_PENMQ); contains Interpro domain(s) IPR011685 LETM1-like "; NbS00001143g0103.1 protein AED:0.20 eAED:0.20 QI:345|1|0.83|1|0.2|0.16|6|290|145 NbS00001143g0101.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|4|0|87 NbS00001143g0106.1 protein AED:0.32 eAED:0.43 QI:0|0|0|1|0|0|2|0|153 NbS00001143g0107.1 protein AED:0.51 eAED:0.55 QI:0|0|0|1|0|0|2|0|99 NbS00001143g0304.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|143 NbS00001143g0305.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0|3|0|110 NbS00022767g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|802; (*GB) gi|5917664|gb|AAD55979.1|AF159296_1 (e_value=0.0) extensin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LJ64|PLRX1_ARATH (e_value=2e-144) Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1;; (*TAIR) AT3G19020.1 (e_value=1e-145) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6559174-6562044 REVERSE LENGTH=956;; (*ITAG) Solyc10g050470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:45268840-45270972 transcript_region:SL2.40ch10:45268840..45270972+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004221g0005.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|0|0.66|3|0|552; (*GB) gi|225434223|ref|XP_002275875.1| (e_value=1e-166) PREDICTED: transcription factor tau subunit sfc1-like [Vitis vinifera];; (*SWP) sp|Q9Y5Q8|TF3C5_HUMAN (e_value=8e-27) General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2;; (*TAIR) AT5G24450.1 (e_value=3e-133) | Symbols: | Transcription factor IIIC, subunit 5 | chr5:8348780-8353130 FORWARD LENGTH=554;; (*ITAG) Solyc12g011180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4021936-4033273 transcript_region:SL2.40ch12:4021936..4033273- functional_description:"General transcription factor 3C polypeptide 5 (AHRD V1 *-*- TF3C5_HUMAN); contains Interpro domain(s) IPR019136 Transcription factor IIIC, subunit 5 "; NbS00004221g0003.1 protein AED:0.43 eAED:0.61 QI:0|1|0|1|1|1|2|0|64; (*GB) gi|357139629|ref|XP_003571383.1| (e_value=7e-21) PREDICTED: autophagy-related protein 8C-like [Brachypodium distachyon];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=3e-22) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT1G62040.2 (e_value=3e-22) | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133;; (*ITAG) Solyc03g031650.2.1 (e_value=1e-24) genomic_reference:SL2.40ch03 gene_region:8384152-8387089 transcript_region:SL2.40ch03:8384152..8387089- go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00011433g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|506; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=3e-17) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G75620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc12g089250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62801945-62803657 transcript_region:SL2.40ch12:62801945..62803657+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00011433g0009.1 protein AED:0.20 eAED:0.20 QI:84|0.75|0.6|0.8|0.75|1|5|0|389; (*GB) gi|225458045|ref|XP_002277913.1| (e_value=7e-76) PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|Q56XU4|C3H6_ARATH (e_value=1e-43) Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1;; (*TAIR) AT1G19860.1 (e_value=8e-45) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413;; (*ITAG) Solyc12g089260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62807939-62816214 transcript_region:SL2.40ch12:62807939..62816214+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 6 (AHRD V1 ***- C3H6_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00056816g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.77|1|0.75|0.77|9|351|556; (*GB) gi|225446625|ref|XP_002276769.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera];; (*SWP) sp|Q493J1|RS5_BLOPB (e_value=6e-27) 30S ribosomal protein S5 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rpsE PE=3 SV=1;; (*TAIR) AT1G64880.1 (e_value=3e-174) | Symbols: | Ribosomal protein S5 family protein | chr1:24105713-24108780 FORWARD LENGTH=515;; (*ITAG) Solyc11g008710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2887741-2892339 transcript_region:SL2.40ch11:2887741..2892339+ go_terms:GO:0005840,GO:0005622 functional_description:"30S ribosomal protein S5 (AHRD V1 *-*- C7R892_KANKD); contains Interpro domain(s) IPR000851 Ribosomal protein S5 "; GO:0005840,GO:0005622 NbS00056816g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.61|0.5|14|250|558; (*GB) gi|359495874|ref|XP_002265653.2| (e_value=0.0) PREDICTED: beta-glucosidase 42-like [Vitis vinifera];; (*SWP) sp|Q9FIW4|BGL42_ARATH (e_value=0.0) Beta-glucosidase 42 OS=Arabidopsis thaliana GN=BGLU42 PE=2 SV=1;; (*TAIR) AT5G36890.1 (e_value=0.0) | Symbols: BGLU42 | beta glucosidase 42 | chr5:14542164-14546090 REVERSE LENGTH=490;; (*ITAG) Solyc11g008720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2894342-2901035 transcript_region:SL2.40ch11:2894342..2901035+ go_terms:GO:0005975 functional_description:"Beta-glucosidase G4 (AHRD V1 ***- A8TVR1_MEDTR); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00035207g0005.1 protein AED:0.09 eAED:0.09 QI:26|1|0|1|1|1|2|61|21 NbS00035207g0007.1 protein AED:0.39 eAED:0.68 QI:0|0|0|0.83|0.8|0.83|6|0|217; (*ITAG) Solyc07g015850.1.1 (e_value=1e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00013209g0020.1 protein AED:0.01 eAED:0.01 QI:30|1|1|1|1|1|2|573|473; (*GB) gi|224143576|ref|XP_002325003.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80345|CDKF1_ARATH (e_value=0.0) Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1;; (*TAIR) AT4G28980.1 (e_value=0.0) | Symbols: CDKF;1, CAK1AT | CDK-activating kinase 1AT | chr4:14288471-14290102 FORWARD LENGTH=479;; (*ITAG) Solyc12g007200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1629539-1632295 transcript_region:SL2.40ch12:1629539..1632295- go_terms:GO:0006468 functional_description:"Cell division protein kinase 20 (AHRD V1 *-*- CDK20_DANRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013209g0025.1 protein AED:0.23 eAED:0.24 QI:2595|0.88|0.94|1|0.55|0.52|19|232|257; (*GB) gi|255546439|ref|XP_002514279.1| (e_value=4e-113) 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis];; (*SWP) sp|Q9ZPI6|AIM1_ARATH (e_value=2e-106) Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1;; (*TAIR) AT4G29010.1 (e_value=1e-107) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc12g007170.1.1 (e_value=8e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1605539-1615180 transcript_region:SL2.40ch12:1605539..1615180+ go_terms:GO:0050662,GO:0006631,GO:0008152,GO:0016491 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0050662,GO:0006631,GO:0008152,GO:0016491 NbS00013209g0028.1 protein AED:0.09 eAED:0.10 QI:0|0.85|0.62|1|0.85|0.87|8|0|531; (*GB) gi|225445198|ref|XP_002280793.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249023 [Vitis vinifera];; (*SWP) sp|Q571G4|LIN54_MOUSE (e_value=3e-36) Protein lin-54 homolog OS=Mus musculus GN=Lin54 PE=2 SV=2;; (*TAIR) AT4G29000.1 (e_value=6e-169) | Symbols: | Tesmin/TSO1-like CXC domain-containing protein | chr4:14293957-14296602 FORWARD LENGTH=603;; (*ITAG) Solyc12g007180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1616773-1625594 transcript_region:SL2.40ch12:1616773..1625594- functional_description:"Tesmin/TSO1-like CXC domain-containing protein (AHRD V1 *--- Q54TZ5_DICDI); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbS00013209g0029.1 protein AED:0.52 eAED:0.79 QI:0|0|0|0.33|0|0.33|3|0|83 NbS00013209g0018.1 protein AED:0.27 eAED:0.30 QI:0|0|0|0.75|0|0|4|0|200; (*ITAG) Solyc11g007000.1.1 (e_value=7e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1492033-1495752 transcript_region:SL2.40ch11:1492033..1495752+ go_terms:GO:0009055 functional_description:"Heme A synthase (AHRD V1 ***- C6MFW4_9PROT); contains Interpro domain(s) IPR003780 Cytochrome oxidase assembly "; GO:0009055 NbS00013209g0030.1 protein AED:0.38 eAED:0.48 QI:0|0|0|1|0|0|2|0|98; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-28) hypothetical protein [Nicotiana tabacum]; NbS00001728g0006.1 protein AED:0.58 eAED:0.58 QI:43|0|0|0.33|0.5|0.33|3|0|52 NbS00001728g0101.1 protein AED:0.42 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|233 NbS00001728g0109.1 protein AED:0.05 eAED:0.05 QI:712|1|1|1|0.33|0.71|7|260|100 NbS00001728g0108.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|8|714|541 NbS00001728g0111.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|324 NbS00056352g0003.1 protein AED:0.08 eAED:0.08 QI:664|1|1|1|0.66|0.5|4|0|264; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=3e-14) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc12g097070.1.1 (e_value=4e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64052160-64064288 transcript_region:SL2.40ch12:64052160..64064288- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00059181g0005.1 protein AED:0.21 eAED:0.21 QI:516|0.90|0.83|1|0.81|0.58|12|0|625; (*GB) gi|298204800|emb|CBI25298.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-53) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G03810.1 (e_value=0.0) | Symbols: EDA30 | O-fucosyltransferase family protein | chr3:972190-975901 REVERSE LENGTH=656;; (*ITAG) Solyc06g059980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34298758-34313602 transcript_region:SL2.40ch06:34298758..34313602+ functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 *--- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00022760g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|225426118|ref|XP_002272569.1| (e_value=8e-78) PREDICTED: probable membrane-associated kinase regulator 2-like [Vitis vinifera];; (*SWP) sp|Q9SH58|MAKR2_ARATH (e_value=4e-42) Probable membrane-associated kinase regulator 2 OS=Arabidopsis thaliana GN=MAKR2 PE=2 SV=1;; (*TAIR) AT1G64080.1 (e_value=3e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). | chr1:23785230-23786557 REVERSE LENGTH=411;; (*ITAG) Solyc08g081710.2.1 (e_value=4e-126) genomic_reference:SL2.40ch08 gene_region:61861782-61863661 transcript_region:SL2.40ch08:61861782..61863661- functional_description:"Unknown Protein (AHRD V1)"; NbS00027819g0002.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|2|1440|184; (*GB) gi|224071605|ref|XP_002303537.1| (e_value=3e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56XJ7|Y4276_ARATH (e_value=7e-24) Uncharacterized protein At4g22758 OS=Arabidopsis thaliana GN=At4g22758 PE=2 SV=1;; (*TAIR) AT4G22758.1 (e_value=5e-25) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G27830.1). | chr4:11958477-11959904 FORWARD LENGTH=255;; (*ITAG) Solyc08g079590.1.1 (e_value=7e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60261959-60264342 transcript_region:SL2.40ch08:60261959..60264342+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *--- D7ME07_ARALY)"; NbS00022015g0011.1 protein AED:0.37 eAED:0.39 QI:7|0.75|0.77|1|0.62|0.77|9|418|278; (*GB) gi|356552585|ref|XP_003544646.1| (e_value=2e-98) PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like [Glycine max];; (*SWP) sp|Q9HAN9|NMNA1_HUMAN (e_value=6e-47) Nicotinamide mononucleotide adenylyltransferase 1 OS=Homo sapiens GN=NMNAT1 PE=1 SV=1;; (*TAIR) AT5G55810.1 (e_value=3e-96) | Symbols: AtNMNAT, NMNAT | nicotinate/nicotinamide mononucleotide adenyltransferase | chr5:22584229-22586239 REVERSE LENGTH=238;; (*ITAG) Solyc07g065590.2.1 (e_value=3e-131) genomic_reference:SL2.40ch07 gene_region:64511859-64515895 transcript_region:SL2.40ch07:64511859..64515895- go_terms:GO:0004515 functional_description:"Nicotinamide mononucleotide adenylyltransferase 1 (AHRD V1 **** C1BT21_9MAXI); contains Interpro domain(s) IPR005248 Probable nicotinate-nucleotide adenylyltransferase "; GO:0004515 NbS00021567g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|123 NbS00009648g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|377; (*GB) gi|6093744|sp|Q43062.1|PME_PRUPE (e_value=3e-90) RecName: Full=Pectinesterase/pectinesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase inhibitor PPE8B; AltName: Full=Pectin methylesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase PPE8B; Short=PE PPE8B; AltName: Full=Pectin methylesterase PPE8B; Flags: Precursor;; (*SWP) sp|Q43062|PME_PRUPE (e_value=8e-92) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G43270.1 (e_value=1e-85) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:15222402-15225124 REVERSE LENGTH=527;; (*ITAG) Solyc10g049370.1.1 (e_value=9e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:40968120-40969318 transcript_region:SL2.40ch10:40968120..40969318+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9HAG5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00009648g0006.1 protein AED:0.29 eAED:0.29 QI:387|0.8|0.75|1|0.8|0.81|16|0|563; (*GB) gi|225442335|ref|XP_002280910.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.1 (e_value=0.0) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501;; (*ITAG) Solyc03g121410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63565537-63573588 transcript_region:SL2.40ch03:63565537..63573588- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00056375g0001.1 protein AED:0.41 eAED:0.41 QI:73|-1|0|1|-1|1|1|80|51 NbS00027135g0002.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.33|0.66|1|1|3|0|84; (*GB) gi|44917165|dbj|BAD12183.1| (e_value=7e-45) 14-3-3 i-2 protein [Nicotiana tabacum];; (*SWP) sp|P93259|1433_MESCR (e_value=4e-45) 14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1;; (*TAIR) AT3G02520.1 (e_value=8e-44) | Symbols: GRF7, GF14 NU | general regulatory factor 7 | chr3:526800-527915 REVERSE LENGTH=265;; (*ITAG) Solyc03g034180.2.1 (e_value=2e-46) genomic_reference:SL2.40ch03 gene_region:10153209-10155317 transcript_region:SL2.40ch03:10153209..10155317- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00017476g0006.1 protein AED:0.12 eAED:0.12 QI:41|1|1|1|0.66|0.75|4|482|449; (*GB) gi|225428265|ref|XP_002279546.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 15 [Vitis vinifera];; (*SWP) sp|Q681N2|PUB15_ARATH (e_value=4e-168) U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2;; (*TAIR) AT5G42340.1 (e_value=3e-169) | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16930367 REVERSE LENGTH=660;; (*ITAG) Solyc04g082440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63684002-63686801 transcript_region:SL2.40ch04:63684002..63686801+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00017476g0003.1 protein AED:0.32 eAED:0.77 QI:0|0|0|1|1|1|2|0|175 NbS00017476g0009.1 protein AED:0.21 eAED:0.28 QI:0|0|0|1|0|0|2|0|195; (*GB) gi|224121446|ref|XP_002318584.1| (e_value=4e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9B0|U89B1_ARATH (e_value=1e-30) UDP-glycosyltransferase 89B1 OS=Arabidopsis thaliana GN=UGT89B1 PE=2 SV=2;; (*TAIR) AT1G73880.1 (e_value=1e-31) | Symbols: UGT89B1 | UDP-glucosyl transferase 89B1 | chr1:27785143-27786564 FORWARD LENGTH=473;; (*ITAG) Solyc03g114710.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:58661374-58663109 transcript_region:SL2.40ch03:58661374..58663109- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** B5MGN9_PHYAM); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00017476g0011.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|113; (*ITAG) Solyc10g049530.1.1 (e_value=6e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00017476g0012.1 protein AED:0.41 eAED:0.46 QI:0|0|0|1|0|0|2|0|103; (*ITAG) Solyc10g049530.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00017476g0010.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|81; (*ITAG) Solyc12g039050.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00057805g0001.1 protein AED:0.12 eAED:0.22 QI:357|0.75|0.8|1|0.5|0.6|5|0|894; (*GB) gi|225432278|ref|XP_002275999.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245979 [Vitis vinifera];; (*TAIR) AT2G47820.2 (e_value=4e-107) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1). | chr2:19588122-19590629 FORWARD LENGTH=805;; (*ITAG) Solyc01g067090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67818751-67822171 transcript_region:SL2.40ch01:67818751..67822171- functional_description:"Homeodomain-like (AHRD V1 *-*- A2Q346_MEDTR)"; NbS00001413g0038.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc00g020000.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806347-11806520 transcript_region:SL2.40ch00:11806347..11806520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001413g0059.1 protein AED:0.42 eAED:0.46 QI:0|0|0|0.8|0.25|0.6|5|0|613; (*GB) gi|68164803|ref|YP_247599.1| (e_value=3e-131) photosystem I P700 chlorophyll a apoprotein A1 [Cucumis sativus];; (*SWP) sp|A0A335|PSAA_COFAR (e_value=8e-131) Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=8e-130) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc10g017890.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6075874-6078763 transcript_region:SL2.40ch10:6075874..6078763+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein (AHRD V1 ***- B9RL07_RICCO); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00001413g0023.1 protein AED:0.17 eAED:0.56 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|57013958|ref|YP_173430.1| (e_value=1e-67) hypothetical protein NitaMp091 [Nicotiana tabacum]; NbS00001413g0065.1 protein AED:0.56 eAED:0.77 QI:0|0|0|0.66|0.5|0.33|3|0|117 NbS00001413g0055.1 protein AED:0.09 eAED:0.25 QI:0|0.16|0.14|1|0|0.14|7|0|419; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=3e-165) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=2e-113) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*TAIR) AT2G07715.1 (e_value=2e-128) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:3411180-3412694 FORWARD LENGTH=389;; (*ITAG) Solyc00g022110.2.1 (e_value=1e-112) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00001413g0053.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0.33|0.25|4|0|212; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=1e-37) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P93401|NU2M_OENBE (e_value=4e-22) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=1e-21) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g063510.1.1 (e_value=5e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:31980796-31981664 transcript_region:SL2.40ch03:31980796..31981664- functional_description:"Unknown Protein (AHRD V1)"; NbS00001413g0054.1 protein AED:0.55 eAED:0.81 QI:0|0|0|0.75|0.66|0.5|4|0|154; (*ITAG) Solyc00g244290.1.1 (e_value=8e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00001413g0039.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|132 NbS00001413g0031.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|88 NbS00001413g0058.1 protein AED:0.36 eAED:0.46 QI:0|0|0|1|0|0|6|0|524; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=2e-70) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P93401|NU2M_OENBE (e_value=3e-38) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=6e-42) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=4e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00001413g0057.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|5|0|308; (*GB) gi|377806971|ref|YP_005090405.1| (e_value=2e-88) nad2 gene product (mitochondrion) [Boea hygrometrica];; (*SWP) sp|O05000|NU2M_ARATH (e_value=1e-84) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=9e-87) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g013130.2.1 (e_value=5e-109) genomic_reference:SL2.40ch00 gene_region:10673286-10677092 transcript_region:SL2.40ch00:10673286..10677092- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- Q7CZK9_AGRT5); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00001413g0056.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|0|0|4|0|258; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=4e-43) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P93401|NU2M_OENBE (e_value=5e-28) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=2e-26) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc10g062040.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605388-54605612 transcript_region:SL2.40ch10:54605388..54605612+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00001413g0061.1 protein AED:0.28 eAED:0.44 QI:0|0|0|1|0|0|2|0|240; (*GB) gi|157325530|ref|YP_001468308.1| (e_value=3e-81) photosystem I P700 chlorophyll a apoprotein A1 [Ipomoea purpurea];; (*SWP) sp|Q0G9W2|PSAA_DAUCA (e_value=2e-82) Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=2e-82) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc01g017310.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23936390-23936614 transcript_region:SL2.40ch01:23936390..23936614+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- B7T350_9ROSI); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00001413g0063.1 protein AED:0.19 eAED:0.40 QI:0|0|0|1|0|0|2|0|230; (*GB) gi|57014012|ref|YP_173483.1| (e_value=2e-99) cytochrome c maturation protein CcmB [Nicotiana tabacum];; (*SWP) sp|P93280|CCMB_ARATH (e_value=2e-71) Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMB PE=2 SV=2;; (*ITAG) ATMG00110.1 (e_value=2e-93) | Symbols: CCB206 | cytochrome C biogenesis 206 | chrM:30463-31083 FORWARD LENGTH=206;; (*ITAG) Solyc00g020040.1.1 (e_value=7e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11809684-11810304 transcript_region:SL2.40ch00:11809684..11810304+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis (Fragment) (AHRD V1 ***- A4KXV6_9ROSI); contains Interpro domain(s) IPR003544 Cytochrome c-type biogenesis protein CcmB "; GO:0016020 NbS00001413g0062.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|0|0|4|0|152; (*ITAG) Solyc11g056430.1.1 (e_value=6e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43139373-43139774 transcript_region:SL2.40ch11:43139373..43139774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001413g0060.1 protein AED:0.42 eAED:0.65 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|14627103|emb|CAC44035.1| (e_value=6e-27) PSI P700 apoprotein A1 [Daucus carota];; (*SWP) sp|Q1KXV9|PSAA_HELAN (e_value=1e-27) Photosystem I P700 chlorophyll a apoprotein A1 OS=Helianthus annuus GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=2e-28) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc09g015340.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8549610-8552077 transcript_region:SL2.40ch09:8549610..8552077+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- C3UNX2_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00041819g0012.1 protein AED:0.08 eAED:0.07 QI:0|0.57|0.62|0.87|0.57|0.37|8|526|321; (*GB) gi|359482117|ref|XP_003632714.1| (e_value=4e-122) PREDICTED: PHD finger protein ING2-like [Vitis vinifera];; (*SWP) sp|B3H615|ING2_ARATH (e_value=8e-112) PHD finger protein ING2 OS=Arabidopsis thaliana GN=ING2 PE=1 SV=1;; (*TAIR) AT1G54390.3 (e_value=6e-113) | Symbols: ING2 | PHD finger protein-related | chr1:20305061-20306943 REVERSE LENGTH=262;; (*ITAG) Solyc10g078520.1.1 (e_value=5e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59637763-59641139 transcript_region:SL2.40ch10:59637763..59641139+ go_terms:GO:0008270 functional_description:"Inhibitor of growth protein 4 (AHRD V1 ***- C3KHB0_ANOFI); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00041819g0011.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|258; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00041819g0015.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.5|0.33|3|482|432; (*GB) gi|224136644|ref|XP_002322380.1| (e_value=4e-161) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=3e-11) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G54950.1 (e_value=6e-115) | Symbols: PLP7, PLA IIIA | patatin-like protein 6 | chr3:20359076-20360774 REVERSE LENGTH=488;; (*ITAG) Solyc10g078530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59645667-59647481 transcript_region:SL2.40ch10:59645667..59647481- go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00041819g0014.1 protein AED:0.31 eAED:0.31 QI:0|1|0.33|1|1|1|3|0|319; (*GB) gi|225441391|ref|XP_002278205.1| (e_value=2e-146) PREDICTED: TBCC domain-containing protein 1-like [Vitis vinifera];; (*TAIR) AT3G57890.1 (e_value=7e-137) | Symbols: | Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573;; (*ITAG) Solyc10g080440.1.1 (e_value=2e-171) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61036122-61045515 transcript_region:SL2.40ch10:61036122..61045515+ go_terms:GO:0005488 functional_description:"TBCC domain-containing protein 1 (AHRD V1 ***- TBCC1_XENTR); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0005488 NbS00041819g0017.1 protein AED:0.75 eAED:0.75 QI:0|0|0|1|0|0.5|2|0|93; (*GB) gi|297739860|emb|CBI30042.3| (e_value=4e-57) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57890.1 (e_value=3e-55) | Symbols: | Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573;; (*ITAG) Solyc10g080440.1.1 (e_value=2e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61036122-61045515 transcript_region:SL2.40ch10:61036122..61045515+ go_terms:GO:0005488 functional_description:"TBCC domain-containing protein 1 (AHRD V1 ***- TBCC1_XENTR); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0005488 NbS00050653g0003.1 protein AED:0.29 eAED:0.29 QI:131|1|1|1|0.69|0.64|14|378|508; (*GB) gi|109675118|gb|ABG37021.1| (e_value=0.0) aspartic protease [Nicotiana tabacum];; (*SWP) sp|P40782|CYPR1_CYNCA (e_value=0.0) Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc07g051850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57713505-57718748 transcript_region:SL2.40ch07:57713505..57718748+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q96383_CENCA); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00041813g0003.1 protein AED:0.22 eAED:0.22 QI:120|0.87|0.94|1|0.81|0.82|17|192|676; (*GB) gi|350538549|ref|NP_001234604.1| (e_value=0.0) beta-amyrin synthase [Solanum lycopersicum];; (*SWP) sp|E7DN63|BAMS_SOLLC (e_value=0.0) Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1;; (*TAIR) AT1G78950.1 (e_value=0.0) | Symbols: | Terpenoid cyclases family protein | chr1:29684558-29688673 REVERSE LENGTH=759;; (*ITAG) Solyc12g006530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1041051-1049001 transcript_region:SL2.40ch12:1041051..1049001+ go_terms:GO:0016866,GO:0003824 functional_description:"Cycloartenol synthase (AHRD V1 ***- D7LA92_ARALY); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0016866,GO:0003824 NbS00028815g0003.1 protein AED:0.10 eAED:0.12 QI:0|0.66|0.8|0.9|0.77|0.7|10|1991|327; (*GB) gi|359492114|ref|XP_002283430.2| (e_value=3e-111) PREDICTED: uncharacterized protein LOC100247103 isoform 1 [Vitis vinifera];; (*TAIR) AT1G19330.2 (e_value=2e-86) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:6680824-6683290 REVERSE LENGTH=242;; (*ITAG) Solyc04g079930.2.1 (e_value=2e-117) genomic_reference:SL2.40ch04 gene_region:61845037-61848301 transcript_region:SL2.40ch04:61845037..61848301- functional_description:"Os10g0358600 protein (Fragment) (AHRD V1 ***- Q0IY80_ORYSJ)"; NbS00009016g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.25|0.75|0|0|4|120|244; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=3e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009016g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|46; (*GB) gi|384038819|gb|AFH58000.1| (e_value=1e-23) chloroplast PsbO4 precursor [Nicotiana benthamiana];; (*SWP) sp|P26320|PSBO_SOLTU (e_value=1e-24) Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1;; (*TAIR) AT5G66570.1 (e_value=2e-22) | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PS II oxygen-evolving complex 1 | chr5:26568744-26570124 FORWARD LENGTH=332;; (*ITAG) Solyc02g090030.2.1 (e_value=2e-25) genomic_reference:SL2.40ch02 gene_region:46276521-46278207 transcript_region:SL2.40ch02:46276521..46278207- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266 NbS00052720g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.85|1|0.66|0.42|7|1228|219; (*GB) gi|255556141|ref|XP_002519105.1| (e_value=1e-93) Protein ariadne-1, putative [Ricinus communis];; (*SWP) sp|Q84RR2|ARI2_ARATH (e_value=2e-85) Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1;; (*TAIR) AT2G16090.1 (e_value=2e-86) | Symbols: ARI2, ATARI2 | RING/U-box superfamily protein | chr2:6987367-6989822 REVERSE LENGTH=593;; (*ITAG) Solyc01g109280.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:88033361-88040424 transcript_region:SL2.40ch01:88033361..88040424- go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00001215g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|281; (*GB) gi|584861|sp|P37118.1|C71A2_SOLME (e_value=3e-122) RecName: Full=Cytochrome P450 71A2; AltName: Full=CYPLXXIA2; AltName: Full=Cytochrome P-450EG4;; (*SWP) sp|P37118|C71A2_SOLME (e_value=7e-124) Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1;; (*TAIR) AT3G48280.1 (e_value=5e-81) | Symbols: CYP71A25 | cytochrome P450, family 71, subfamily A, polypeptide 25 | chr3:17879594-17881164 FORWARD LENGTH=490;; (*ITAG) Solyc03g111950.2.1 (e_value=7e-139) genomic_reference:SL2.40ch03 gene_region:56569356-56571125 transcript_region:SL2.40ch03:56569356..56571125- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001730g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.62|0.66|1|1|1|9|86|404; (*GB) gi|350538893|ref|NP_001234620.1| (e_value=0.0) beta-mannosidase enzyme precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV33|BGL44_ARATH (e_value=0.0) Beta-glucosidase 44 OS=Arabidopsis thaliana GN=BGLU44 PE=2 SV=1;; (*TAIR) AT3G18080.1 (e_value=0.0) | Symbols: BGLU44 | B-S glucosidase 44 | chr3:6191586-6194124 FORWARD LENGTH=512;; (*ITAG) Solyc12g040640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40136352-40141560 transcript_region:SL2.40ch12:40136352..40141560- go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00001730g0005.1 protein AED:0.15 eAED:0.15 QI:7|0.90|0.83|1|1|1|12|601|590; (*GB) gi|350539521|ref|NP_001233915.1| (e_value=0.0) mitogen-activated protein kinase 16 [Solanum lycopersicum];; (*SWP) sp|Q9LV37|MPK9_ARATH (e_value=0.0) Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2;; (*TAIR) AT3G18040.1 (e_value=0.0) | Symbols: MPK9 | MAP kinase 9 | chr3:6174800-6178150 FORWARD LENGTH=510;; (*ITAG) Solyc12g040680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40280910-40287741 transcript_region:SL2.40ch12:40280910..40287741+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** Q5XU40_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00018194g0005.1 protein AED:0.26 eAED:0.29 QI:411|0.88|0.8|1|0.66|0.7|10|0|806; (*GB) gi|224111286|ref|XP_002315804.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4I4|POT6_ARATH (e_value=0.0) Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=0.0) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc05g005740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:553397-558860 transcript_region:SL2.40ch05:553397..558860+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00002264g0003.1 protein AED:0.01 eAED:0.01 QI:35|1|1|1|1|1|3|359|295; (*GB) gi|225451283|ref|XP_002277975.1| (e_value=5e-76) PREDICTED: uncharacterized protein LOC100246931 [Vitis vinifera];; (*TAIR) AT1G67170.1 (e_value=5e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). | chr1:25127727-25129145 FORWARD LENGTH=359;; (*ITAG) Solyc07g006260.2.1 (e_value=7e-137) genomic_reference:SL2.40ch07 gene_region:1058260-1060637 transcript_region:SL2.40ch07:1058260..1060637+ functional_description:"Myosin-like protein (AHRD V1 **-- Q9C717_ARATH)"; NbS00027251g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.5|0.75|0.66|0.5|4|208|156 NbS00004325g0017.1 protein AED:0.12 eAED:0.12 QI:56|0.5|0.45|0.90|0.7|0.72|11|0|567; (*GB) gi|224086024|ref|XP_002307782.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-60) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G76270.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:28613554-28616537 REVERSE LENGTH=572;; (*ITAG) Solyc12g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64260052-64263538 transcript_region:SL2.40ch12:64260052..64263538+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00004325g0012.1 protein AED:0.25 eAED:0.25 QI:3|1|0.83|1|1|1|12|259|413; (*GB) gi|297848730|ref|XP_002892246.1| (e_value=0.0) ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G04850.1 (e_value=0.0) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc12g098420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00004325g0011.1 protein AED:0.33 eAED:0.33 QI:364|0.83|1|1|0.33|0.71|7|354|144; (*GB) gi|351726864|ref|NP_001236629.1| (e_value=3e-94) uncharacterized protein LOC100527736 [Glycine max];; (*SWP) sp|O96625|ARPC4_DICDI (e_value=1e-65) Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1;; (*TAIR) AT4G14147.1 (e_value=4e-93) | Symbols: ARPC4 | protein binding | chr4:8154079-8156246 REVERSE LENGTH=169;; (*ITAG) Solyc12g098430.1.1 (e_value=2e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64274593-64279444 transcript_region:SL2.40ch12:64274593..64279444+ go_terms:GO:0030674,GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 4 (AHRD V1 **** A2XP21_ORYSI); contains Interpro domain(s) IPR008384 ARP23 complex 20 kDa subunit "; GO:0030674,GO:0051015 NbS00004325g0016.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0|0|2|0|98; (*GB) gi|28261760|ref|NP_783274.1| (e_value=6e-51) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=2e-52) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-48) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00051956g0010.1 protein AED:0.15 eAED:0.15 QI:0|1|0.33|1|1|1|3|0|539; (*GB) gi|296083070|emb|CBI22474.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G19553.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr3:6790988-6792507 REVERSE LENGTH=479;; (*ITAG) Solyc10g049640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41787315-41789243 transcript_region:SL2.40ch10:41787315..41789243- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00051956g0014.1 protein AED:0.37 eAED:0.37 QI:100|1|1|1|0|0.33|3|155|99; (*GB) gi|296083068|emb|CBI22472.3| (e_value=9e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G14830.2 (e_value=9e-36) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6363893 FORWARD LENGTH=146;; (*ITAG) Solyc10g049650.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41800373-41803147 transcript_region:SL2.40ch10:41800373..41803147- go_terms:GO:0005634,GO:0008270 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *--- Q1RL25_CIOIN); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0005634,GO:0008270 NbS00043548g0002.1 protein AED:0.29 eAED:0.37 QI:44|0|0|1|1|1|3|0|135; (*GB) gi|255578176|ref|XP_002529957.1| (e_value=1e-17) Non-structural maintenance of chromosome element, putative [Ricinus communis];; (*TAIR) AT1G51130.1 (e_value=2e-15) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc12g041890.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40943251-40945691 transcript_region:SL2.40ch12:40943251..40945691- functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 *--- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00022434g0009.1 protein AED:0.28 eAED:0.28 QI:327|1|1|1|0|0|3|441|122; (*GB) gi|225429460|ref|XP_002277333.1| (e_value=6e-71) PREDICTED: uncharacterized protein LOC100267911 [Vitis vinifera];; (*TAIR) AT4G29480.1 (e_value=1e-66) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:14486265-14487257 REVERSE LENGTH=122;; (*ITAG) Solyc08g065470.2.1 (e_value=4e-85) genomic_reference:SL2.40ch08 gene_region:50793610-50795280 transcript_region:SL2.40ch08:50793610..50795280+ go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- Q1EP47_MUSBA); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00022434g0006.1 protein AED:0.31 eAED:0.31 QI:343|1|1|1|1|1|9|351|484; (*GB) gi|328727190|gb|AEB38782.1| (e_value=0.0) ferrochelatase isoform I [Nicotiana tabacum];; (*SWP) sp|P42044|HEMH_CUCSA (e_value=0.0) Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1;; (*TAIR) AT5G26030.2 (e_value=0.0) | Symbols: FC1, FC-I, ATFC-I | ferrochelatase 1 | chr5:9096675-9098752 FORWARD LENGTH=466;; (*ITAG) Solyc10g084140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63108257-63114427 transcript_region:SL2.40ch10:63108257..63114427- go_terms:GO:0006783 functional_description:"Ferrochelatase (AHRD V1 ***- B9RRU8_RICCO); contains Interpro domain(s) IPR001015 Ferrochelatase "; GO:0006783 NbS00018729g0010.1 protein AED:0.11 eAED:0.13 QI:0|0.5|0.33|1|0.87|0.66|9|0|1239; (*GB) gi|357462867|ref|XP_003601715.1| (e_value=0.0) hypothetical protein MTR_3g084640 [Medicago truncatula];; (*SWP) sp|O23277|PRD1_ARATH (e_value=0.0) Protein PRD1 OS=Arabidopsis thaliana GN=PRD1 PE=1 SV=3;; (*TAIR) AT4G14180.1 (e_value=0.0) | Symbols: AtPRD1, PRD1 | putative recombination initiation defect 1 | chr4:8178330-8183515 FORWARD LENGTH=1268;; (*ITAG) Solyc03g114040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58135420-58141886 transcript_region:SL2.40ch03:58135420..58141886- go_terms:GO:0042803 functional_description:"Os04g0347800 protein (Fragment) (AHRD V1 *-*- Q0JE06_ORYSJ)"; GO:0042803 NbS00018729g0011.1 protein AED:0.23 eAED:0.23 QI:312|1|1|1|0.92|0.86|15|449|525; (*GB) gi|62183958|gb|AAX73299.1| (e_value=0.0) putative permease I [Solanum lycopersicum];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc03g114030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58123040-58129815 transcript_region:SL2.40ch03:58123040..58129815- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00018729g0012.1 protein AED:0.36 eAED:0.38 QI:0|0.66|0.75|1|0.33|0.25|4|454|94; (*GB) gi|359806563|ref|NP_001241009.1| (e_value=1e-53) uncharacterized protein LOC100812176 [Glycine max];; (*SWP) sp|Q2H080|RM04_CHAGB (e_value=1e-13) 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MRPL4 PE=3 SV=1;; (*TAIR) AT1G07830.1 (e_value=5e-53) | Symbols: | ribosomal protein L29 family protein | chr1:2422549-2423392 FORWARD LENGTH=144;; (*ITAG) Solyc03g114050.2.1 (e_value=6e-61) genomic_reference:SL2.40ch03 gene_region:58143215-58150353 transcript_region:SL2.40ch03:58143215..58150353+ go_terms:GO:0005840,GO:0005761 functional_description:"54S ribosomal protein L4 mitochondrial (AHRD V1 *-*- C8UZV4_EMENI); contains Interpro domain(s) IPR010729 Ribosomal protein L47, mitochondrial "; GO:0005840,GO:0005761 NbS00034175g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.66|1|1|1|6|438|163; (*GB) gi|323511860|gb|ADX87418.1| (e_value=3e-103) decreased size exclusion limit 1 [Nicotiana benthamiana];; (*SWP) sp|Q9EQ15|GNB1L_MOUSE (e_value=5e-25) Guanine nucleotide-binding protein subunit beta-like protein 1 OS=Mus musculus GN=Gnb1l PE=2 SV=2;; (*TAIR) AT4G29860.1 (e_value=2e-56) | Symbols: EMB2757, TAN | Transducin/WD40 repeat-like superfamily protein | chr4:14603296-14605704 REVERSE LENGTH=386;; (*ITAG) Solyc11g010910.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3963140-3969591 transcript_region:SL2.40ch11:3963140..3969591- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 ***- Q3MV14_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00034175g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|0|0.66|3|18|226; (*GB) gi|359495860|ref|XP_002266337.2| (e_value=3e-88) PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like [Vitis vinifera];; (*TAIR) AT4G38020.1 (e_value=9e-82) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:17861568-17863010 FORWARD LENGTH=352;; (*ITAG) Solyc11g010900.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3959714-3962267 transcript_region:SL2.40ch11:3959714..3962267- go_terms:GO:0006396 functional_description:"RRNA methyltransferase (AHRD V1 ***- A4IRM5_GEOTN); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00008725g0010.1 protein AED:0.23 eAED:0.23 QI:155|1|1|1|0.66|0.25|4|583|83; (*GB) gi|255551737|ref|XP_002516914.1| (e_value=7e-48) 40S ribosomal protein S21e, putative [Ricinus communis];; (*SWP) sp|Q3E902|RS212_ARATH (e_value=2e-46) 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=2;; (*TAIR) AT5G27700.1 (e_value=1e-47) | Symbols: | Ribosomal protein S21e | chr5:9807541-9808048 REVERSE LENGTH=82;; (*ITAG) Solyc01g066840.2.1 (e_value=8e-53) genomic_reference:SL2.40ch01 gene_region:67445196-67447049 transcript_region:SL2.40ch01:67445196..67447049+ go_terms:GO:0003735 functional_description:"40S ribosomal protein S21 (AHRD V1 ***- D7M5J1_ARALY); contains Interpro domain(s) IPR001931 Ribosomal protein S21e "; GO:0003735 NbS00008725g0014.1 protein AED:0.16 eAED:0.25 QI:0|0.71|0.37|1|0.28|0.37|8|0|321; (*GB) gi|225426479|ref|XP_002270961.1| (e_value=8e-122) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-37) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G30340.1 (e_value=7e-80) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:11956626-11958969 FORWARD LENGTH=364;; (*ITAG) Solyc01g066850.2.1 (e_value=2e-167) genomic_reference:SL2.40ch01 gene_region:67451222-67453528 transcript_region:SL2.40ch01:67451222..67453528+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LP41_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00008725g0009.1 protein AED:0.00 eAED:0.00 QI:278|1|1|1|1|1|7|299|147; (*GB) gi|225432296|ref|XP_002273224.1| (e_value=1e-47) PREDICTED: uncharacterized protein LOC100249327 [Vitis vinifera];; (*TAIR) AT4G15790.1 (e_value=1e-33) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr4:8982390-8984069 FORWARD LENGTH=147;; (*ITAG) Solyc01g066900.2.1 (e_value=8e-66) genomic_reference:SL2.40ch01 gene_region:67544396-67548020 transcript_region:SL2.40ch01:67544396..67548020+ functional_description:"Os12g0541400 protein (Fragment) (AHRD V1 ***- Q0IMU1_ORYSJ)"; NbS00008725g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225426477|ref|XP_002277018.1| (e_value=2e-50) PREDICTED: uncharacterized protein LOC100254752 [Vitis vinifera];; (*TAIR) AT1G63310.1 (e_value=2e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:23486580-23487044 REVERSE LENGTH=154;; (*ITAG) Solyc01g066860.2.1 (e_value=3e-91) genomic_reference:SL2.40ch01 gene_region:67453578-67454383 transcript_region:SL2.40ch01:67453578..67454383- functional_description:"Unknown Protein (AHRD V1)"; NbS00003877g0004.1 protein AED:0.27 eAED:0.27 QI:11|1|0.85|1|0.66|0.57|7|401|240; (*GB) gi|225463946|ref|XP_002268010.1| (e_value=2e-125) PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera];; (*TAIR) AT3G04650.1 (e_value=1e-112) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:1262017-1264343 FORWARD LENGTH=486;; (*ITAG) Solyc01g097160.2.1 (e_value=6e-157) genomic_reference:SL2.40ch01 gene_region:79868250-79874975 transcript_region:SL2.40ch01:79868250..79874975+ go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B7G7N7_PHATR); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00021279g0001.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|1|1|5|0|365; (*GB) gi|225454346|ref|XP_002278060.1| (e_value=4e-103) PREDICTED: probable receptor-like protein kinase At5g24010-like [Vitis vinifera];; (*SWP) sp|Q9FLW0|Y5241_ARATH (e_value=4e-47) Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1;; (*TAIR) AT4G00300.2 (e_value=4e-72) | Symbols: | fringe-related protein | chr4:128690-130126 FORWARD LENGTH=478;; (*ITAG) Solyc01g094920.2.1 (e_value=1e-165) genomic_reference:SL2.40ch01 gene_region:78086434-78088188 transcript_region:SL2.40ch01:78086434..78088188- functional_description:"Receptor-like kinase (AHRD V1 ***- C6ZRN8_SOYBN)"; NbS00004767g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.83|1|1|1|6|389|433; (*GB) gi|225444875|ref|XP_002279373.1| (e_value=2e-144) PREDICTED: uncharacterized protein LOC100256072 [Vitis vinifera];; (*TAIR) AT5G57010.1 (e_value=9e-127) | Symbols: | calmodulin-binding family protein | chr5:23068207-23070203 FORWARD LENGTH=495;; (*ITAG) Solyc12g008960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2266946-2269413 transcript_region:SL2.40ch12:2266946..2269413+ functional_description:"Calmodulin-binding protein (AHRD V1 ***- A2I5F3_BETVU)"; NbS00004767g0010.1 protein AED:0.20 eAED:0.20 QI:303|0.85|0.86|1|0.42|0.6|15|0|501; (*GB) gi|6625653|gb|AAF19345.1|AF129003_1 (e_value=0.0) diacylglycerol acylCoA acyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SLD2|DGAT1_ARATH (e_value=0.0) Diacylglycerol O-acyltransferase 1 OS=Arabidopsis thaliana GN=DGAT1 PE=1 SV=2;; (*TAIR) AT2G19450.1 (e_value=0.0) | Symbols: TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | membrane bound O-acyl transferase (MBOAT) family protein | chr2:8426436-8429455 FORWARD LENGTH=520;; (*ITAG) Solyc12g008970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2271798-2279705 transcript_region:SL2.40ch12:2271798..2279705- functional_description:"Diacylglycerol acyltransferase (AHRD V1 ***- Q5GKZ7_SOYBN); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; NbS00004767g0011.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|0.5|0.33|3|0|165; (*GB) gi|386870481|gb|AFJ42571.1| (e_value=7e-64) elongation initiation factor 4A [Sesamum indicum];; (*SWP) sp|P35683|IF4A1_ORYSJ (e_value=7e-64) Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2;; (*TAIR) AT1G54270.2 (e_value=1e-63) | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=407;; (*ITAG) Solyc12g096000.1.1 (e_value=8e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63425599-63428191 transcript_region:SL2.40ch12:63425599..63428191- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00028790g0004.1 protein AED:0.16 eAED:0.17 QI:453|0.66|0.5|1|1|1|4|0|250; (*GB) gi|82400118|gb|ABB72798.1| (e_value=9e-155) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=2e-155) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G07090.2 (e_value=9e-151) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202783-2203805 FORWARD LENGTH=244;; (*ITAG) Solyc02g070350.2.1 (e_value=5e-158) genomic_reference:SL2.40ch02 gene_region:34687926-34690148 transcript_region:SL2.40ch02:34687926..34690148+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00053078g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.42|1|0.5|0.57|7|406|914; (*GB) gi|359475162|ref|XP_003631603.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Vitis vinifera];; (*SWP) sp|Q9LHN5|PP242_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1;; (*TAIR) AT3G18840.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:6496198-6498234 FORWARD LENGTH=678;; (*ITAG) Solyc01g095600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78575599-78578845 transcript_region:SL2.40ch01:78575599..78578845+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00030820g0001.1 protein AED:0.00 eAED:0.00 QI:5|0|0.5|1|0|0.5|2|202|88; (*ITAG) Solyc07g009050.2.1 (e_value=1e-40) genomic_reference:SL2.40ch07 gene_region:4021150-4021740 transcript_region:SL2.40ch07:4021150..4021740- go_terms:GO:0006952 functional_description:"Unknown Protein (AHRD V1)"; GO:0006952 NbS00009745g0020.1 protein AED:0.12 eAED:0.12 QI:201|0.88|0.9|1|0.77|0.8|10|746|289; (*GB) gi|255560125|ref|XP_002521080.1| (e_value=5e-73) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NLW5|XRI1_ARATH (e_value=9e-62) Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2;; (*TAIR) AT5G48720.2 (e_value=7e-63) | Symbols: XRI, XRI1 | x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300;; (*ITAG) Solyc06g083410.2.1 (e_value=2e-158) genomic_reference:SL2.40ch06 gene_region:45104228-45107324 transcript_region:SL2.40ch06:45104228..45107324+ go_terms:GO:0005515 functional_description:"Os04g0376600 protein (Fragment) (AHRD V1 *--- C7J0T0_ORYSJ)"; GO:0005515 NbS00009745g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.95|0.86|0.95|0.85|0.81|22|0|1866; (*GB) gi|359480142|ref|XP_002269196.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267035 [Vitis vinifera];; (*TAIR) AT3G24870.1 (e_value=0.0) | Symbols: | Helicase/SANT-associated, DNA binding protein | chr3:9075237-9084278 REVERSE LENGTH=1907;; (*ITAG) Solyc06g083420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45115668-45130266 transcript_region:SL2.40ch06:45115668..45130266+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 **-- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00009745g0016.1 protein AED:0.19 eAED:0.29 QI:0|0|0|1|0|0|2|0|210; (*ITAG) Solyc06g083430.1.1 (e_value=2e-49) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:45132414-45133391 transcript_region:SL2.40ch06:45132414..45133391- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00009745g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|825|104; (*ITAG) Solyc09g060080.2.1 (e_value=9e-19) genomic_reference:SL2.40ch09 gene_region:53116687-53137092 transcript_region:SL2.40ch09:53116687..53137092+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00009745g0017.1 protein AED:0.31 eAED:0.86 QI:39|0|0|1|0|0|3|0|96 NbS00004300g0004.1 protein AED:0.00 eAED:0.00 QI:162|1|1|1|1|1|2|562|330; (*GB) gi|225431669|ref|XP_002263864.1| (e_value=0.0) PREDICTED: thioredoxin reductase 2-like [Vitis vinifera];; (*SWP) sp|Q39242|TRXB2_ARATH (e_value=0.0) Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2;; (*TAIR) AT2G17420.1 (e_value=0.0) | Symbols: NTRA, ATNTRA, NTR2 | NADPH-dependent thioredoxin reductase A | chr2:7564357-7566219 FORWARD LENGTH=378;; (*ITAG) Solyc03g032000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8780706-8784476 transcript_region:SL2.40ch03:8780706..8784476+ go_terms:GO:0004791 functional_description:"Thioredoxin reductase (AHRD V1 **** B9SRA3_RICCO); contains Interpro domain(s) IPR005982 Thioredoxin reductase "; GO:0004791 NbS00051522g0002.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|62 NbS00013420g0001.1 protein AED:0.35 eAED:0.37 QI:0|0|0.5|1|0|0.5|2|446|126; (*GB) gi|224057770|ref|XP_002299315.1| (e_value=5e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT1G27290.2 (e_value=3e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9481788-9482576 FORWARD LENGTH=142;; (*ITAG) Solyc05g015710.2.1 (e_value=1e-55) genomic_reference:SL2.40ch05 gene_region:11755997-11758617 transcript_region:SL2.40ch05:11755997..11758617- functional_description:"Unknown Protein (AHRD V1)"; NbS00013420g0003.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|64; (*GB) gi|224075543|ref|XP_002304675.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT5G63500.1 (e_value=2e-20) | Symbols: | Protein of unknown function (DUF 3339) | chr5:25423460-25423669 FORWARD LENGTH=69;; (*ITAG) Solyc05g015700.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:11752540-11752749 transcript_region:SL2.40ch05:11752540..11752749+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00006116g0020.1 protein AED:0.07 eAED:0.07 QI:476|0.85|0.87|1|0.57|0.5|8|1900|120; (*GB) gi|357484103|ref|XP_003612338.1| (e_value=2e-54) Phosphatidylinositide phosphatase SAC1 [Medicago truncatula];; (*TAIR) AT5G66020.1 (e_value=2e-55) | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | Phosphoinositide phosphatase family protein | chr5:26401193-26404691 REVERSE LENGTH=593;; (*ITAG) Solyc00g007010.2.1 (e_value=4e-63) genomic_reference:SL2.40ch00 gene_region:6556570-6569989 transcript_region:SL2.40ch00:6556570..6569989- go_terms:GO:0004439,GO:0043812 functional_description:"Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439,GO:0043812 NbS00006116g0019.1 protein AED:0.27 eAED:0.27 QI:568|1|1|1|1|1|7|0|473; (*GB) gi|219560127|gb|ACL27272.1| (e_value=0.0) catalase [Nicotiana benthamiana];; (*SWP) sp|P49315|CATA1_NICPL (e_value=0.0) Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc02g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40980455-40984836 transcript_region:SL2.40ch02:40980455..40984836- go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** O24511_TOBAC); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00006116g0014.1 protein AED:0.30 eAED:0.30 QI:0|1|0.87|1|1|1|8|0|555; (*GB) gi|255561391|ref|XP_002521706.1| (e_value=0.0) plant ubiquilin, putative [Ricinus communis];; (*SWP) sp|Q9UMX0|UBQL1_HUMAN (e_value=5e-53) Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2;; (*TAIR) AT2G17200.1 (e_value=6e-139) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc02g082800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41021911-41031456 transcript_region:SL2.40ch02:41021911..41031456- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00006116g0022.1 protein AED:0.12 eAED:0.35 QI:0|0|0|1|1|1|2|0|510; (*GB) gi|224084084|ref|XP_002307209.1| (e_value=4e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=2e-110) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=1e-111) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295;; (*ITAG) Solyc03g025560.2.1 (e_value=5e-62) genomic_reference:SL2.40ch03 gene_region:7340332-7342535 transcript_region:SL2.40ch03:7340332..7342535+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** UPPS_PYRFU); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00014227g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|296; (*GB) gi|359496981|ref|XP_003635389.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100854561 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=8e-42) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g082980.1.1 (e_value=5e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41150273-41151151 transcript_region:SL2.40ch02:41150273..41151151+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00014227g0011.1 protein AED:0.06 eAED:0.06 QI:231|1|1|1|1|1|5|122|407; (*GB) gi|225439532|ref|XP_002264195.1| (e_value=1e-174) PREDICTED: uncharacterized protein LOC100261884 [Vitis vinifera];; (*TAIR) AT2G38320.1 (e_value=4e-158) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc02g082950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41139450-41141750 transcript_region:SL2.40ch02:41139450..41141750+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 ***- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00014227g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|0|0|2|74|353; (*GB) gi|147788269|emb|CAN69960.1| (e_value=0.0) hypothetical protein VITISV_032887 [Vitis vinifera];; (*SWP) sp|Q84J71|PP161_ARATH (e_value=5e-169) Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1;; (*TAIR) AT2G17670.1 (e_value=4e-170) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7674420-7675811 FORWARD LENGTH=463;; (*ITAG) Solyc02g082970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41146637-41148046 transcript_region:SL2.40ch02:41146637..41148046+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L9H0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014227g0012.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|0.5|0.66|3|0|149; (*GB) gi|21495|emb|CAA47921.1| (e_value=7e-63) chitinase [Solanum tuberosum];; (*SWP) sp|Q05537|CHID_SOLLC (e_value=2e-59) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1;; (*TAIR) AT3G12500.1 (e_value=1e-47) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g061770.2.1 (e_value=3e-63) genomic_reference:SL2.40ch02 gene_region:27867963-27869757 transcript_region:SL2.40ch02:27867963..27869757+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00014227g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|87; (*GB) gi|3790355|dbj|BAA33971.1| (e_value=5e-25) chitinase 134 [Nicotiana tabacum];; (*SWP) sp|Q39799|CHI1_GOSHI (e_value=7e-22) Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT3G12500.1 (e_value=4e-20) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g082960.2.1 (e_value=9e-26) genomic_reference:SL2.40ch02 gene_region:41142255-41143956 transcript_region:SL2.40ch02:41142255..41143956+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00033562g0007.1 protein AED:0.13 eAED:0.13 QI:168|0.85|0.85|0.95|0.75|0.76|21|406|1307; (*GB) gi|225445547|ref|XP_002282238.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 11-like [Vitis vinifera];; (*SWP) sp|Q9BZH6|WDR11_HUMAN (e_value=1e-40) WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1;; (*TAIR) AT3G33530.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr3:14085354-14093449 FORWARD LENGTH=1345;; (*ITAG) Solyc07g008080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2782240-2800373 transcript_region:SL2.40ch07:2782240..2800373- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 11 (AHRD V1 **-- WDR11_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00009828g0002.1 protein AED:0.00 eAED:0.00 QI:198|1|1|1|0|0|6|0|265; (*GB) gi|297741624|emb|CBI32756.3| (e_value=2e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF46|AB28G_ARATH (e_value=2e-95) ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1;; (*TAIR) AT5G60740.1 (e_value=2e-96) | Symbols: | ABC transporter family protein | chr5:24425824-24430269 REVERSE LENGTH=1109;; (*ITAG) Solyc11g069820.1.1 (e_value=5e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51534465-51544075 transcript_region:SL2.40ch11:51534465..51544075+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 28 (AHRD V1 ***- AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016020,GO:0017111,GO:0016887 NbS00039584g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|761|634; (*GB) gi|147838532|emb|CAN65388.1| (e_value=0.0) hypothetical protein VITISV_038361 [Vitis vinifera];; (*SWP) sp|Q9FND8|PP409_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1;; (*TAIR) AT5G40400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:16166444-16168276 FORWARD LENGTH=610;; (*ITAG) Solyc03g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1934183-1937655 transcript_region:SL2.40ch03:1934183..1937655+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00060220g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|85 NbS00062221g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0.33|1|0.5|0.33|3|484|485; (*GB) gi|225453144|ref|XP_002273909.1| (e_value=7e-173) PREDICTED: U-box domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=5e-28) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G03440.1 (e_value=5e-143) | Symbols: | ARM repeat superfamily protein | chr3:815709-818568 FORWARD LENGTH=408;; (*ITAG) Solyc02g091430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47295745-47298947 transcript_region:SL2.40ch02:47295745..47298947- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L0H5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00006522g0007.1 protein AED:0.08 eAED:0.08 QI:57|0.75|0.8|1|0.5|0.6|5|336|425; (*GB) gi|27752361|gb|AAO19451.1| (e_value=0.0) glucose-6-phosphate/phosphate translocator 2 [Solanum tuberosum];; (*SWP) sp|Q94B38|GPT2_ARATH (e_value=5e-151) Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2;; (*TAIR) AT1G61800.1 (e_value=4e-152) | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388;; (*ITAG) Solyc05g045670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56569409-56572667 transcript_region:SL2.40ch05:56569409..56572667+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** Q84Y17_SOLTU); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00006522g0010.1 protein AED:0.16 eAED:0.20 QI:0|0.62|0.55|1|0.75|0.77|9|0|572; (*GB) gi|147800352|emb|CAN62139.1| (e_value=0.0) hypothetical protein VITISV_039239 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=0.0) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=0.0) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc03g031760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8510446-8514148 transcript_region:SL2.40ch03:8510446..8514148- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00007200g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|314; (*GB) gi|357446333|ref|XP_003593444.1| (e_value=1e-165) Syntaxin-124 [Medicago truncatula];; (*SWP) sp|O64791|SY124_ARATH (e_value=8e-159) Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1;; (*TAIR) AT1G61290.1 (e_value=6e-160) | Symbols: SYP124, ATSYP124 | syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303;; (*ITAG) Solyc12g005580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:311206-312223 transcript_region:SL2.40ch12:311206..312223- go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00007200g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|597; (*GB) gi|225447243|ref|XP_002272819.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Vitis vinifera];; (*SWP) sp|Q9LR69|PPR8_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1;; (*TAIR) AT1G03540.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:883782-885611 FORWARD LENGTH=609;; (*ITAG) Solyc10g008570.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2680073-2683654 transcript_region:SL2.40ch10:2680073..2683654- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCG0_ARALY); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0004519 NbS00042248g0012.1 protein AED:0.07 eAED:0.07 QI:219|0.75|1|1|1|1|5|605|511; (*GB) gi|225450232|ref|XP_002266606.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-57) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G44500.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:18374447-18376435 FORWARD LENGTH=573;; (*ITAG) Solyc10g045420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28841570-28844574 transcript_region:SL2.40ch10:28841570..28844574+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00042248g0010.1 protein AED:0.03 eAED:0.03 QI:75|1|1|1|0|0|2|715|625; (*GB) gi|359482590|ref|XP_002284545.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g27610-like [Vitis vinifera];; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=2e-165) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=1e-166) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc03g093630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48603800-48605620 transcript_region:SL2.40ch03:48603800..48605620- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00042248g0011.1 protein AED:0.30 eAED:0.30 QI:283|0.95|0.96|1|0.5|0.56|25|460|663; (*GB) gi|350539637|ref|NP_001234742.1| (e_value=0.0) embryonic flower 2 [Solanum lycopersicum];; (*SWP) sp|Q8L6Y4|EMF2_ARATH (e_value=0.0) Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2;; (*TAIR) AT5G51230.1 (e_value=0.0) | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=631;; (*ITAG) Solyc03g093640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48624958-48655114 transcript_region:SL2.40ch03:48624958..48655114- go_terms:GO:0005515,GO:0003700 functional_description:"Polycomb group protein EMBRYONIC FLOWER 2 (AHRD V1 **-- EMF2_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00042248g0013.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|62241075|dbj|BAD93694.1| (e_value=5e-21) acyltransferase-like protein [Nicotiana tabacum];; (*ITAG) Solyc05g039950.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:47480105-47482311 transcript_region:SL2.40ch05:47480105..47482311- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00016716g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.72|1|0.7|0.90|11|173|873; (*GB) gi|225447492|ref|XP_002267265.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245992 [Vitis vinifera];; (*TAIR) AT3G07660.1 (e_value=7e-172) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc07g045230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55658476-55669122 transcript_region:SL2.40ch07:55658476..55669122- functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 *--- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00016716g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|360; (*GB) gi|296085056|emb|CBI28471.3| (e_value=1e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=7e-27) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G12710.1 (e_value=7e-121) | Symbols: | ARM repeat superfamily protein | chr4:7485040-7486733 REVERSE LENGTH=402;; (*ITAG) Solyc07g045220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55650453-55654789 transcript_region:SL2.40ch07:55650453..55654789- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MVP7_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016725g0011.1 protein AED:0.11 eAED:0.11 QI:189|0.87|0.88|1|0.75|0.66|9|457|585; (*GB) gi|225431130|ref|XP_002265926.1| (e_value=0.0) PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q5E9N9|APEX2_BOVIN (e_value=2e-73) DNA-(apurinic or apyrimidinic site) lyase 2 OS=Bos taurus GN=APEX2 PE=2 SV=1;; (*TAIR) AT4G36050.2 (e_value=0.0) | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr4:17052323-17055044 REVERSE LENGTH=610;; (*ITAG) Solyc03g033530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9348056-9354762 transcript_region:SL2.40ch03:9348056..9354762- go_terms:GO:0004528,GO:0008311 functional_description:"DNA lyase (AHRD V1 **** A4URR7_COCIM); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth "; GO:0004528,GO:0008311 NbS00016725g0001.1 protein AED:0.16 eAED:0.16 QI:755|1|1|1|0.91|0.84|13|405|425; (*GB) gi|350538611|ref|NP_001234607.1| (e_value=0.0) calcium-dependent protein kinase [Solanum lycopersicum];; (*SWP) sp|Q7XJR9|CDPKG_ARATH (e_value=0.0) Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1;; (*TAIR) AT2G17890.1 (e_value=0.0) | Symbols: CPK16 | calcium-dependent protein kinase 16 | chr2:7769885-7772627 REVERSE LENGTH=571;; (*ITAG) Solyc03g033540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9356208-9363698 transcript_region:SL2.40ch03:9356208..9363698- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** C6KGT3_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00004774g0012.1 protein AED:0.23 eAED:0.31 QI:0|0|0.14|1|0.16|0.28|7|0|297; (*GB) gi|70663930|emb|CAE02944.3| (e_value=4e-25) OSJNBa0014K14.16 [Oryza sativa Japonica Group];; (*SWP) sp|Q5YGP7|PLET2_ARATH (e_value=3e-24) AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1;; (*TAIR) AT1G51190.1 (e_value=2e-25) | Symbols: PLT2 | Integrase-type DNA-binding superfamily protein | chr1:18977517-18980305 FORWARD LENGTH=568;; (*ITAG) Solyc11g061750.1.1 (e_value=5e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45463808-45467453 transcript_region:SL2.40ch11:45463808..45467453+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00013056g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|0.5|1|3|0|156; (*GB) gi|255536801|ref|XP_002509467.1| (e_value=4e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20670.1 (e_value=2e-20) | Symbols: | Protein of unknown function (DUF506) | chr2:8912163-8913472 REVERSE LENGTH=294;; (*ITAG) Solyc03g006410.2.1 (e_value=5e-55) genomic_reference:SL2.40ch03 gene_region:1009242-1011978 transcript_region:SL2.40ch03:1009242..1011978+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00011817g0009.1 protein AED:0.16 eAED:0.16 QI:154|1|0.71|1|0.83|0.71|7|0|257; (*GB) gi|147838176|emb|CAN74144.1| (e_value=5e-121) hypothetical protein VITISV_011748 [Vitis vinifera];; (*SWP) sp|Q18600|YTV2_CAEEL (e_value=2e-26) Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4;; (*TAIR) AT1G67420.1 (e_value=4e-111) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255411-25260358 FORWARD LENGTH=872;; (*ITAG) Solyc12g035490.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25695633-25699781 transcript_region:SL2.40ch12:25695633..25699781+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase (AHRD V1 **-- B6K5X8_SCHJY); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00011817g0012.1 protein AED:0.27 eAED:0.27 QI:109|0.75|0.66|1|0.37|0.44|9|0|416; (*GB) gi|225425460|ref|XP_002279240.1| (e_value=2e-96) PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera];; (*TAIR) AT1G67420.1 (e_value=2e-79) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255411-25260358 FORWARD LENGTH=872;; (*ITAG) Solyc12g035500.1.1 (e_value=2e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:25714177-25741519 transcript_region:SL2.40ch12:25714177..25741519+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_XENLA); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00019707g0007.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0.5|0.66|3|591|324; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-89) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-44) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-44) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=7e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00019707g0003.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|22128591|gb|AAM52341.1| (e_value=2e-64) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=5e-31) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=4e-32) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00006983g0010.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.2|0.8|0.75|0.8|5|0|381; (*GB) gi|225449991|ref|XP_002273748.1| (e_value=1e-126) PREDICTED: protein PNS1 [Vitis vinifera];; (*SWP) sp|Q4WYG7|PNS1_ASPFU (e_value=2e-12) Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1;; (*TAIR) AT5G13760.1 (e_value=3e-112) | Symbols: | Plasma-membrane choline transporter family protein | chr5:4442102-4444565 FORWARD LENGTH=569;; (*ITAG) Solyc01g087890.2.1 (e_value=5e-155) genomic_reference:SL2.40ch01 gene_region:74519205-74522762 transcript_region:SL2.40ch01:74519205..74522762+ functional_description:"Choline transporter-like protein 5-A (Fragment) (AHRD V1 *--- CTL5A_DANRE); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00006983g0011.1 protein AED:0.59 eAED:0.59 QI:0|0.5|0.33|0.66|1|0.66|3|0|69; (*GB) gi|356531647|ref|XP_003534388.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100305506 [Glycine max];; (*TAIR) AT3G52040.1 (e_value=1e-29) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19304368-19304802 REVERSE LENGTH=90;; (*ITAG) Solyc01g087880.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:74513038-74515849 transcript_region:SL2.40ch01:74513038..74515849+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006983g0005.1 protein AED:0.63 eAED:0.82 QI:34|0|0.25|0.5|1|1|4|0|59 NbS00010752g0106.1 protein AED:0.07 eAED:0.07 QI:170|1|1|1|0.25|0.6|5|350|269 NbS00011704g0003.1 protein AED:0.64 eAED:0.64 QI:0|0.33|0.25|0.5|0|0|4|0|121; (*GB) gi|363806730|ref|NP_001242272.1| (e_value=2e-20) uncharacterized protein LOC100807266 [Glycine max];; (*SWP) sp|Q9SV72|EPFL9_ARATH (e_value=6e-21) EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana GN=EPFL9 PE=3 SV=1;; (*TAIR) AT4G12970.1 (e_value=5e-22) | Symbols: STOMAGEN, EPFL9 | stomagen | chr4:7586244-7586798 REVERSE LENGTH=102;; (*ITAG) Solyc08g066610.2.1 (e_value=2e-30) genomic_reference:SL2.40ch08 gene_region:52577429-52577978 transcript_region:SL2.40ch08:52577429..52577978+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 9 (AHRD V1 *-*- EPFL9_ARATH)"; NbS00033318g0007.1 protein AED:0.33 eAED:0.33 QI:92|1|0.83|1|1|1|6|0|230; (*GB) gi|355329952|dbj|BAL14275.1| (e_value=4e-159) serine/threonine-protein phosphatase 5 [Nicotiana tabacum];; (*SWP) sp|Q84XU2|PPP5_ARATH (e_value=4e-123) Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1;; (*TAIR) AT2G42810.1 (e_value=5e-140) | Symbols: PAPP5, PP5 | protein phosphatase 5.2 | chr2:17812336-17815896 REVERSE LENGTH=484;; (*ITAG) Solyc07g055860.2.1 (e_value=6e-147) genomic_reference:SL2.40ch07 gene_region:61097390-61107260 transcript_region:SL2.40ch07:61097390..61107260- go_terms:GO:0004722,GO:0019904 functional_description:"Serine/threonine-protein phosphatase 5 (AHRD V1 **** B6TKH0_MAIZE); contains Interpro domain(s) IPR011236 Protein phosphatase 5 "; GO:0004722,GO:0019904 NbS00033318g0006.1 protein AED:0.29 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|106 NbS00000115g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|1|1|3|249|339; (*GB) gi|49533779|gb|AAT66778.1| (e_value=8e-136) Putative MYB related protein, identical [Solanum demissum];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=1e-54) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G15310.1 (e_value=2e-71) | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein 16 | chr5:4974894-4976106 FORWARD LENGTH=326;; (*ITAG) Solyc05g007690.1.1 (e_value=3e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2182007-2184191 transcript_region:SL2.40ch05:2182007..2184191+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00020883g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|4514716|dbj|BAA75495.1| (e_value=2e-66) NtEPc [Nicotiana tabacum];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=9e-14) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT3G18590.1 (e_value=2e-28) | Symbols: ENODL5, AtENODL5 | early nodulin-like protein 5 | chr3:6398670-6399337 FORWARD LENGTH=188;; (*ITAG) Solyc03g119880.2.1 (e_value=4e-48) genomic_reference:SL2.40ch03 gene_region:62476615-62477222 transcript_region:SL2.40ch03:62476615..62477222+ go_terms:GO:0009055,GO:0055114 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055,GO:0055114 NbS00015498g0015.1 protein AED:0.17 eAED:0.17 QI:234|1|0.85|1|1|1|7|0|519; (*GB) gi|225442743|ref|XP_002284961.1| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit [Vitis vinifera];; (*SWP) sp|Q9SEX2|KTNA1_ARATH (e_value=0.0) Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1;; (*TAIR) AT1G80350.1 (e_value=0.0) | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523;; (*ITAG) Solyc06g066810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38379045-38385550 transcript_region:SL2.40ch06:38379045..38385550- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 **-- B6TID9_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00015498g0005.1 protein AED:0.14 eAED:0.16 QI:186|0|0.5|1|0|0.5|2|0|253; (*GB) gi|225454680|ref|XP_002269835.1| (e_value=1e-151) PREDICTED: uncharacterized protein LOC100264930 isoform 1 [Vitis vinifera];; (*TAIR) AT1G64980.1 (e_value=2e-150) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:24137840-24138619 REVERSE LENGTH=259;; (*ITAG) Solyc06g066800.1.1 (e_value=5e-170) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38377440-38378177 transcript_region:SL2.40ch06:38377440..38378177+ functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- B8HXH4_CYAP4)"; NbS00033919g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|0|410; (*GB) gi|225434812|ref|XP_002282608.1| (e_value=2e-126) PREDICTED: probable protein phosphatase 2C 24 [Vitis vinifera];; (*SWP) sp|Q9LNW3|P2C03_ARATH (e_value=4e-109) Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1;; (*TAIR) AT1G07430.1 (e_value=3e-110) | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | chr1:2281151-2282656 REVERSE LENGTH=442;; (*ITAG) Solyc06g076400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43862169-43864112 transcript_region:SL2.40ch06:43862169..43864112+ go_terms:GO:0004722,GO:0008022 functional_description:"Protein phosphatase 2C (AHRD V1 **** Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00057083g0002.1 protein AED:0.27 eAED:0.27 QI:178|1|1|1|0.33|0.25|4|347|119; (*GB) gi|297817268|ref|XP_002876517.1| (e_value=4e-70) mitochondrial ribosomal protein L51/S25/CI-B8 family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9UUC8|RM51_SCHPO (e_value=1e-18) 54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl51 PE=2 SV=1;; (*TAIR) AT3G59650.1 (e_value=1e-72) | Symbols: | mitochondrial ribosomal protein L51/S25/CI-B8 family protein | chr3:22033216-22033928 FORWARD LENGTH=119;; (*ITAG) Solyc04g014390.2.1 (e_value=7e-81) genomic_reference:SL2.40ch04 gene_region:4638619-4641880 transcript_region:SL2.40ch04:4638619..4641880+ go_terms:GO:0003735,GO:0005515 functional_description:"Mitochondrial ribosomal protein L43 (AHRD V1 ***- B6T6X8_MAIZE); contains Interpro domain(s) IPR007741 Ribosomal protein/NADH dehydrogenase domain "; GO:0003735,GO:0005515 NbS00012424g0007.1 protein AED:0.01 eAED:0.01 QI:195|1|1|1|1|1|3|320|207 NbS00012424g0011.1 protein AED:0.34 eAED:0.40 QI:30|0.25|0.2|1|0|0.2|5|0|180; (*GB) gi|224107399|ref|XP_002314469.1| (e_value=5e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT5G18630.2 (e_value=2e-57) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6202965-6205448 FORWARD LENGTH=357;; (*ITAG) Solyc01g067380.2.1 (e_value=2e-91) genomic_reference:SL2.40ch01 gene_region:68232701-68239132 transcript_region:SL2.40ch01:68232701..68239132- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00012424g0009.1 protein AED:0.38 eAED:0.50 QI:92|0.66|0.28|1|0.83|0.57|7|0|135; (*GB) gi|297736903|emb|CBI26104.3| (e_value=5e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G18640.1 (e_value=2e-58) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6213283-6215494 FORWARD LENGTH=357;; (*ITAG) Solyc06g054550.2.1 (e_value=5e-71) genomic_reference:SL2.40ch06 gene_region:33782976-33790802 transcript_region:SL2.40ch06:33782976..33790802- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00010277g0007.1 protein AED:0.15 eAED:0.15 QI:45|1|1|1|0.81|0.75|12|537|515; (*GB) gi|350538893|ref|NP_001234620.1| (e_value=0.0) beta-mannosidase enzyme precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV33|BGL44_ARATH (e_value=0.0) Beta-glucosidase 44 OS=Arabidopsis thaliana GN=BGLU44 PE=2 SV=1;; (*TAIR) AT3G18080.1 (e_value=0.0) | Symbols: BGLU44 | B-S glucosidase 44 | chr3:6191586-6194124 FORWARD LENGTH=512;; (*ITAG) Solyc03g119080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61837300-61840225 transcript_region:SL2.40ch03:61837300..61840225- go_terms:GO:0080083 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0080083 NbS00010277g0008.1 protein AED:0.16 eAED:0.17 QI:37|0.8|0.33|1|0.6|0.66|6|0|393; (*GB) gi|304304318|gb|ADM21465.1| (e_value=0.0) alpha-dioxygenase 2 [Nicotiana attenuata];; (*SWP) sp|P27607|PGH2_CHICK (e_value=2e-15) Prostaglandin G/H synthase 2 OS=Gallus gallus GN=PTGS2 PE=2 SV=1;; (*TAIR) AT1G73680.1 (e_value=0.0) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631;; (*ITAG) Solyc03g119060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00018439g0015.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.83|0.85|7|443|722; (*GB) gi|356499785|ref|XP_003518717.1| (e_value=0.0) PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max];; (*SWP) sp|O22899|DHX15_ARATH (e_value=0.0) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1;; (*TAIR) AT3G62310.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr3:23057516-23060561 REVERSE LENGTH=726;; (*ITAG) Solyc01g079250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70850920-70856753 transcript_region:SL2.40ch01:70850920..70856753- go_terms:GO:0004004 functional_description:"mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00018439g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|224135623|ref|XP_002327264.1| (e_value=4e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVX1|UBC23_ARATH (e_value=1e-40) Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1;; (*TAIR) AT2G16920.1 (e_value=9e-42) | Symbols: UBC23, PFU2 | ubiquitin-conjugating enzyme 23 | chr2:7334559-7338827 REVERSE LENGTH=1102;; (*ITAG) Solyc01g079290.1.1 (e_value=1e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:70883001-70883855 transcript_region:SL2.40ch01:70883001..70883855- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 (AHRD V1 *-*- Q2HSK9_MEDTR); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00018439g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.62|0.55|1|1|1|9|312|912; (*GB) gi|224068624|ref|XP_002302785.1| (e_value=7e-100) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09320.1 (e_value=5e-46) | Symbols: | agenet domain-containing protein | chr1:3010270-3012228 REVERSE LENGTH=517;; (*ITAG) Solyc01g079230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70832208-70839060 transcript_region:SL2.40ch01:70832208..70839060+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KQP5_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00018439g0016.1 protein AED:0.52 eAED:0.63 QI:164|0.33|0.25|0.75|1|1|4|0|84 NbS00029793g0006.1 protein AED:0.25 eAED:0.30 QI:0|0.72|0.58|1|0.63|0.41|12|0|385; (*GB) gi|350538213|ref|NP_001234076.1| (e_value=2e-175) transaldolase ToTAL2 [Solanum lycopersicum];; (*SWP) sp|B0UV30|TAL_HAES2 (e_value=5e-36) Transaldolase OS=Haemophilus somnus (strain 2336) GN=tal PE=3 SV=1;; (*TAIR) AT1G12230.1 (e_value=5e-127) | Symbols: | Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=405;; (*ITAG) Solyc08g079070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59880581-59886513 transcript_region:SL2.40ch08:59880581..59886513+ go_terms:GO:0004801 functional_description:"Transaldolase (AHRD V1 **** D6N3G8_GOSHI); contains Interpro domain(s) IPR001585 Transaldolase "; GO:0004801 NbS00019115g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|255564685|ref|XP_002523337.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=5e-124) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G01300.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:117065-118522 FORWARD LENGTH=485;; (*ITAG) Solyc01g096040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78888446-78890253 transcript_region:SL2.40ch01:78888446..78890253- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00060605g0005.1 protein AED:0.29 eAED:0.29 QI:115|0.33|0.5|0.75|0.66|0.75|4|76|283; (*GB) gi|359481404|ref|XP_002277067.2| (e_value=2e-33) PREDICTED: acylphosphatase-like [Vitis vinifera];; (*SWP) sp|Q2RQZ4|ACYP_RHORT (e_value=2e-20) Acylphosphatase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=acyP PE=3 SV=1;; (*TAIR) AT5G03370.1 (e_value=6e-31) | Symbols: | acylphosphatase family | chr5:825798-827020 REVERSE LENGTH=171; NbS00042796g0005.1 protein AED:0.01 eAED:0.04 QI:84|1|0|1|0|0.5|2|0|425; (*GB) gi|255546019|ref|XP_002514069.1| (e_value=7e-49) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G13980.1 (e_value=6e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). | chr3:4619189-4620262 REVERSE LENGTH=357;; (*ITAG) Solyc07g041290.1.1 (e_value=8e-102) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:49523053-49523982 transcript_region:SL2.40ch07:49523053..49523982+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00042796g0008.1 protein AED:0.41 eAED:0.41 QI:0|1|0.85|1|0.83|1|7|0|229; (*GB) gi|22326744|ref|NP_196765.2| (e_value=1e-148) omega-amidase [Arabidopsis thaliana];; (*SWP) sp|Q497B0|NIT2_RAT (e_value=7e-96) Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1;; (*TAIR) AT5G12040.1 (e_value=3e-151) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc07g041280.2.1 (e_value=6e-163) genomic_reference:SL2.40ch07 gene_region:49509217-49521517 transcript_region:SL2.40ch07:49509217..49521517+ go_terms:GO:0000257,GO:0050126 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0050126 NbS00051279g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|462; (*GB) gi|11133025|sp|Q43578.1|LCYB_TOBAC (e_value=0.0) RecName: Full=Lycopene beta cyclase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q43578|LCYB_TOBAC (e_value=0.0) Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=1 SV=1;; (*TAIR) AT3G10230.1 (e_value=0.0) | Symbols: LYC | lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501;; (*ITAG) Solyc10g079480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60349353-60350855 transcript_region:SL2.40ch10:60349353..60350855+ go_terms:GO:0016117 functional_description:"Lycopene beta-cyclase 2"; GO:0016117 NbS00051279g0006.1 protein AED:0.06 eAED:0.07 QI:134|1|0.75|1|0.33|0.75|4|0|397; (*GB) gi|356571785|ref|XP_003554053.1| (e_value=0.0) PREDICTED: xylosyltransferase 1-like [Glycine max];; (*SWP) sp|Q5QQ50|XYLT2_CANFA (e_value=3e-25) Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1;; (*TAIR) AT3G03690.1 (e_value=8e-171) | Symbols: UNE7 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:911494-913643 REVERSE LENGTH=378;; (*ITAG) Solyc10g079490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60351738-60356549 transcript_region:SL2.40ch10:60351738..60356549- go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00003370g0012.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|364; (*GB) gi|13183173|gb|AAK15087.1|AF240004_1 (e_value=6e-118) 11S globulin [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=2e-87) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=6e-74) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc03g005580.2.1 (e_value=4e-159) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00003370g0013.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.25|1|1|0.75|4|0|495; (*GB) gi|13183173|gb|AAK15087.1|AF240004_1 (e_value=2e-177) 11S globulin [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=2e-135) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=5e-109) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g090150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65039694-65042890 transcript_region:SL2.40ch09:65039694..65042890- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00055731g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|265; (*ITAG) Solyc07g032700.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00033970g0011.1 protein AED:0.21 eAED:0.23 QI:0|0.37|0.35|0.82|0.62|0.64|17|0|492; (*GB) gi|357507939|ref|XP_003624258.1| (e_value=0.0) V-type ATP synthase beta chain [Medicago truncatula];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=0.0) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.4 (e_value=0.0) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014789 REVERSE LENGTH=487;; (*ITAG) Solyc01g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00033970g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|2246452|gb|AAB62807.1| (e_value=0.0) S-adenosyl-methionine-sterol-C-methyltransferase homolog, partial [Nicotiana tabacum];; (*SWP) sp|Q39227|SMT2_ARATH (e_value=0.0) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=0.0) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc10g055680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52669942-52671015 transcript_region:SL2.40ch10:52669942..52671015- go_terms:GO:0008152,GO:0006694 functional_description:"Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-*- UBIE_BRUME); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0008152,GO:0006694 NbS00007087g0001.1 protein AED:0.16 eAED:0.17 QI:0|0.83|0.85|1|1|1|7|457|738; (*GB) gi|224121474|ref|XP_002318591.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G07920.1 (e_value=0.0) | Symbols: DGK1, ATDGK1 | diacylglycerol kinase1 | chr5:2525197-2528396 REVERSE LENGTH=728;; (*ITAG) Solyc03g115370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59148331-59155113 transcript_region:SL2.40ch03:59148331..59155113+ go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 1 (AHRD V1 **** A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0004143 NbC25203143g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|209360979|gb|ACI43068.1| (e_value=9e-141) NBS-LRR root-knot nematode resistance protein [Capsicum annuum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=2e-21) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=1e-11) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g008450.2.1 (e_value=2e-141) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00024421g0001.1 protein AED:0.02 eAED:0.02 QI:113|1|1|1|0.8|0.66|6|117|391; (*GB) gi|225467985|ref|XP_002269165.1| (e_value=2e-116) PREDICTED: uncharacterized protein LOC100256556 [Vitis vinifera];; (*TAIR) AT4G17240.1 (e_value=1e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). | chr4:9666799-9668292 REVERSE LENGTH=343;; (*ITAG) Solyc11g012610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5392826-5396227 transcript_region:SL2.40ch11:5392826..5396227- functional_description:"Unknown Protein (AHRD V1)"; NbS00024421g0004.1 protein AED:0.40 eAED:0.43 QI:0|0|0|0.6|1|1|5|0|268; (*ITAG) Solyc11g012540.1.1 (e_value=1e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019909g0104.1 protein AED:0.15 eAED:0.15 QI:0|1|0.9|1|0.88|0.9|10|491|557 NbS00019909g0212.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.2|1|0.75|0.6|5|0|695 NbS00019909g0204.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|218 NbS00019909g0209.1 protein AED:0.30 eAED:0.30 QI:28|1|0.90|1|0.7|0.72|11|0|343 NbS00040620g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|697; (*GB) gi|255546377|ref|XP_002514248.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=4e-106) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G19670.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr5:6647025-6649358 FORWARD LENGTH=610;; (*ITAG) Solyc12g008340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1743068-1746064 transcript_region:SL2.40ch12:1743068..1746064+ go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LZA5_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00040620g0012.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|5|73|492; (*GB) gi|255552117|ref|XP_002517103.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8GW61|STP14_ARATH (e_value=0.0) Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2;; (*TAIR) AT1G77210.2 (e_value=0.0) | Symbols: STP14 | sugar transporter 14 | chr1:29009036-29010980 REVERSE LENGTH=504;; (*ITAG) Solyc12g008320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1732691-1736090 transcript_region:SL2.40ch12:1732691..1736090+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00040620g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|350536451|ref|NP_001234759.1| (e_value=1e-71) dehydration responsive element binding protein [Solanum lycopersicum];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=2e-44) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=1e-45) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc12g008350.1.1 (e_value=2e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1759910-1760809 transcript_region:SL2.40ch12:1759910..1760809+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00033688g0001.1 protein AED:0.16 eAED:0.16 QI:415|0.87|1|1|1|1|9|827|352; (*GB) gi|356543706|ref|XP_003540301.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 2-like isoform 2 [Glycine max];; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=404;; (*ITAG) Solyc12g005880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:514570-517761 transcript_region:SL2.40ch12:514570..517761+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00045929g0001.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc12g044970.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00045929g0002.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.25|1|1|4|0|148 NbS00024693g0009.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|0.5|0.33|3|0|818; (*GB) gi|336169731|gb|AEI25530.1| (e_value=5e-75) gibberellic acid insensitive protein [Solanum tuberosum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=4e-76) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT3G03450.1 (e_value=6e-67) | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547;; (*ITAG) Solyc11g011260.1.1 (e_value=2e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00024693g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|947; (*GB) gi|39577522|gb|AAR28378.1| (e_value=0.0) EIX receptor 2 [Solanum lycopersicum];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-56) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT2G34930.1 (e_value=1e-110) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00023938g0003.1 protein AED:0.04 eAED:0.05 QI:551|0.5|0.66|1|0.5|0.33|3|654|806; (*GB) gi|5733831|gb|AAC31213.3| (e_value=0.0) ethylene receptor homolog [Nicotiana tabacum];; (*SWP) sp|Q0WPQ2|ETR2_ARATH (e_value=0.0) Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2;; (*TAIR) AT3G23150.1 (e_value=0.0) | Symbols: ETR2 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:8255156-8257560 FORWARD LENGTH=773;; (*ITAG) Solyc06g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33043757-33047094 transcript_region:SL2.40ch06:33043757..33047094- go_terms:GO:0004872,GO:0051740,GO:0004696 functional_description:"Ethylene receptor (AHRD V1 **** Q9XET8_SOLLC); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0004872,GO:0051740,GO:0004696 NbS00015642g0005.1 protein AED:0.30 eAED:0.36 QI:46|0.6|0.66|1|0.4|0.16|6|356|227; (*GB) gi|2366750|dbj|BAA22083.1| (e_value=2e-74) RNA binding protein [Nicotiana sylvestris];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=3e-43) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT4G13850.3 (e_value=1e-44) | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=144;; (*ITAG) Solyc05g053780.2.1 (e_value=8e-60) genomic_reference:SL2.40ch05 gene_region:62958028-62959831 transcript_region:SL2.40ch05:62958028..62959831+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003676,GO:0000166 NbS00045563g0007.1 protein AED:0.00 eAED:0.00 QI:77|1|1|1|0.5|0.33|3|154|190; (*GB) gi|224117544|ref|XP_002317605.1| (e_value=4e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|B9I0G0|CSPLA_POPTR (e_value=1e-94) CASP-like protein POPTRDRAFT_834139 OS=Populus trichocarpa GN=POPTRDRAFT_834139 PE=3 SV=1;; (*TAIR) AT1G17200.1 (e_value=7e-77) | Symbols: | Uncharacterised protein family (UPF0497) | chr1:5878493-5879871 FORWARD LENGTH=204;; (*ITAG) Solyc10g007660.2.1 (e_value=4e-110) genomic_reference:SL2.40ch10 gene_region:1939692-1941582 transcript_region:SL2.40ch10:1939692..1941582- go_terms:GO:0005515 functional_description:"UPF0497 membrane protein 11 (AHRD V1 ***- U497B_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; GO:0005515 NbS00045563g0001.1 protein AED:0.22 eAED:0.22 QI:145|1|0.75|1|1|1|4|0|443; (*GB) gi|255567172|ref|XP_002524567.1| (e_value=0.0) cell cycle regulatory protein, putative [Ricinus communis];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=5e-27) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT5G48330.2 (e_value=3e-172) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:19585989-19587729 FORWARD LENGTH=454;; (*ITAG) Solyc10g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1945573-1948986 transcript_region:SL2.40ch10:1945573..1948986- go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation RCC1 (AHRD V1 **-- B9MQV6_ANATD); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00045563g0012.1 protein AED:0.17 eAED:0.17 QI:96|0|1|1|0|0|2|607|100; (*ITAG) Solyc10g007670.2.1 (e_value=5e-21) genomic_reference:SL2.40ch10 gene_region:1944125-1945603 transcript_region:SL2.40ch10:1944125..1945603+ go_terms:GO:0016226 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0016226 NbS00045563g0009.1 protein AED:0.46 eAED:0.52 QI:56|0.5|0.66|1|1|1|3|0|71; (*GB) gi|222630231|gb|EEE62363.1| (e_value=2e-23) hypothetical protein OsJ_17152 [Oryza sativa Japonica Group];; (*TAIR) AT5G41010.1 (e_value=2e-23) | Symbols: NRPB12, NRPD12, NRPE12 | DNA directed RNA polymerase, 7 kDa subunit | chr5:16424050-16424921 FORWARD LENGTH=51;; (*ITAG) Solyc10g007650.2.1 (e_value=5e-29) genomic_reference:SL2.40ch10 gene_region:1937373-1939664 transcript_region:SL2.40ch10:1937373..1939664+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC4 (AHRD V1 **** C1BTA1_9MAXI); contains Interpro domain(s) IPR006591 RNA polymerase Rbp10 "; GO:0003899 NbS00007593g0003.1 protein AED:0.12 eAED:0.13 QI:0|1|1|1|1|1|7|328|409; (*GB) gi|255571016|ref|XP_002526459.1| (e_value=0.0) sodium-bile acid cotransporter, putative [Ricinus communis];; (*SWP) sp|O34524|YOCS_BACSU (e_value=7e-54) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT1G78560.1 (e_value=7e-78) | Symbols: | Sodium Bile acid symporter family | chr1:29546846-29548764 REVERSE LENGTH=401;; (*ITAG) Solyc01g103620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83943092-83946456 transcript_region:SL2.40ch01:83943092..83946456- go_terms:GO:0015370 functional_description:"Sodium Bile acid symporter family protein expressed (AHRD V1 **** Q2QX41_ORYSJ); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0015370 NbS00006303g0103.1 protein AED:0.23 eAED:0.23 QI:297|0.61|0.64|0.92|0.92|0.85|14|423|545 NbS00006303g0102.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|3|0|331 NbS00006303g0114.1 protein AED:0.35 eAED:0.35 QI:42|0.33|0.25|0.75|0.66|0.25|4|563|134 NbS00006303g0115.1 protein AED:0.39 eAED:0.39 QI:141|1|1|1|0|0.33|3|48|110 NbS00044470g0009.1 protein AED:0.23 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|521; (*GB) gi|359490831|ref|XP_003634173.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853133 [Vitis vinifera];; (*TAIR) AT5G54180.1 (e_value=1e-166) | Symbols: PTAC15 | plastid transcriptionally active 15 | chr5:21988544-21990183 FORWARD LENGTH=500;; (*ITAG) Solyc03g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45727509-45729457 transcript_region:SL2.40ch03:45727509..45729457- functional_description:"At4g38160-like protein (Fragment) (AHRD V1 *--- C0JEI4_9BRAS); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00044470g0008.1 protein AED:0.28 eAED:0.32 QI:0|0.5|0.4|1|0.25|0.4|5|55|308; (*GB) gi|359490831|ref|XP_003634173.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100853133 [Vitis vinifera];; (*ITAG) Solyc03g081310.2.1 (e_value=3e-97) genomic_reference:SL2.40ch03 gene_region:45730362-45734716 transcript_region:SL2.40ch03:45730362..45734716- functional_description:"Genomic DNA chromosome 5 TAC clone K18P6 (AHRD V1 ***- Q9FLV2_ARATH)"; NbS00044470g0004.1 protein AED:0.75 eAED:0.84 QI:0|0|0|0.5|1|1|4|0|71 NbS00013303g0006.1 protein AED:0.15 eAED:0.15 QI:76|1|0.5|1|1|0.5|2|212|64 NbS00013303g0005.1 protein AED:0.24 eAED:0.24 QI:237|1|0.33|1|1|0.66|3|0|192; (*GB) gi|359488195|ref|XP_002272597.2| (e_value=5e-68) PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera];; (*SWP) sp|Q6YW64|DRB4_ORYSJ (e_value=5e-26) Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1;; (*TAIR) AT1G09700.1 (e_value=2e-22) | Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419;; (*ITAG) Solyc02g091460.2.1 (e_value=1e-46) genomic_reference:SL2.40ch02 gene_region:47322847-47328996 transcript_region:SL2.40ch02:47322847..47328996- go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUP9_BRAOB); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00033913g0004.1 protein AED:0.18 eAED:0.21 QI:0|0.5|0|1|0.5|0.33|3|0|428; (*GB) gi|225459507|ref|XP_002284432.1| (e_value=2e-160) PREDICTED: uncharacterized protein LOC100245359 [Vitis vinifera];; (*SWP) sp|Q9SLG9|PI5K5_ARATH (e_value=2e-21) Phosphatidylinositol 4-phosphate 5-kinase 5 OS=Arabidopsis thaliana GN=PIP5K5 PE=2 SV=1;; (*TAIR) AT1G21920.1 (e_value=8e-124) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr1:7704454-7705866 REVERSE LENGTH=417;; (*ITAG) Solyc11g013010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5872663-5874269 transcript_region:SL2.40ch11:5872663..5874269+ functional_description:"MORN repeat protein (AHRD V1 *--- A3V9K0_9RHOB); contains Interpro domain(s) IPR003409 MORN motif "; NbS00014581g0025.1 protein AED:0.02 eAED:0.02 QI:101|1|1|1|0.5|0.33|3|534|226; (*GB) gi|350534894|ref|NP_001233909.1| (e_value=7e-127) green ripe-like 2 [Solanum lycopersicum];; (*SWP) sp|Q9SD42|RTH_ARATH (e_value=2e-81) Protein RTE1-HOMOLOG OS=Arabidopsis thaliana GN=RTH PE=2 SV=1;; (*TAIR) AT3G51040.3 (e_value=2e-82) | Symbols: RTH | RTE1-homolog | chr3:18952281-18953060 REVERSE LENGTH=231;; (*ITAG) Solyc02g062420.2.1 (e_value=1e-129) genomic_reference:SL2.40ch02 gene_region:28605681-28607166 transcript_region:SL2.40ch02:28605681..28607166+ go_terms:GO:0005515 functional_description:"Transmembrane protein 222 (Fragment) (AHRD V1 **-- Q5SSC2_HUMAN); contains Interpro domain(s) IPR008496 Protein of unknown function DUF778 "; GO:0005515 NbS00014581g0024.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0|1|0|0.33|3|0|337; (*GB) gi|255585965|ref|XP_002533653.1| (e_value=2e-70) transcription factor, putative [Ricinus communis];; (*TAIR) AT3G51060.1 (e_value=4e-59) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc02g062400.2.1 (e_value=1e-113) genomic_reference:SL2.40ch02 gene_region:28579688-28582931 transcript_region:SL2.40ch02:28579688..28582931+ go_terms:GO:0003700,GO:0046982 functional_description:"Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; GO:0003700,GO:0046982 NbS00014581g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|255584420|ref|XP_002532942.1| (e_value=7e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G07900.1 (e_value=2e-21) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc12g010650.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00014581g0001.1 protein AED:0.17 eAED:0.17 QI:214|0.83|0.71|1|0.83|0.71|7|0|390; (*GB) gi|4827251|dbj|BAA77604.1| (e_value=0.0) plastidic aldolase NPALDP1 [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc02g062340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28530062-28532470 transcript_region:SL2.40ch02:28530062..28532470- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q9SXX4_NICPA); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00014581g0027.1 protein AED:0.27 eAED:0.30 QI:0|0.5|0.28|0.85|0.5|0.57|7|0|368; (*GB) gi|359476644|ref|XP_003631874.1| (e_value=4e-133) PREDICTED: uncharacterized protein LOC100852880 [Vitis vinifera];; (*TAIR) AT3G51140.1 (e_value=4e-107) | Symbols: | Protein of unknown function (DUF3353) | chr3:18998182-18999437 FORWARD LENGTH=278;; (*ITAG) Solyc02g062350.2.1 (e_value=7e-163) genomic_reference:SL2.40ch02 gene_region:28534146-28538817 transcript_region:SL2.40ch02:28534146..28538817- go_terms:GO:0010181 functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; GO:0010181 NbS00019536g0012.1 protein AED:0.22 eAED:0.22 QI:0|0.2|0|0.83|0.8|0.66|6|0|447; (*GB) gi|297739755|emb|CBI29937.3| (e_value=2e-158) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4R5D9|YTHD2_MACFA (e_value=1e-59) YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1;; (*TAIR) AT3G13460.1 (e_value=3e-139) | Symbols: ECT2 | evolutionarily conserved C-terminal region 2 | chr3:4385274-4388220 REVERSE LENGTH=667;; (*ITAG) Solyc01g028860.2.1 (e_value=5e-167) genomic_reference:SL2.40ch01 gene_region:33625778-33629920 transcript_region:SL2.40ch01:33625778..33629920- go_terms:GO:0005515 functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005515 NbS00019536g0005.1 protein AED:0.24 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|316; (*GB) gi|225441631|ref|XP_002282103.1| (e_value=4e-138) PREDICTED: uncharacterized protein LOC100252010 [Vitis vinifera];; (*TAIR) AT1G64770.1 (e_value=9e-105) | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron flow 1 | chr1:24057549-24059415 FORWARD LENGTH=348;; (*ITAG) Solyc03g062720.2.1 (e_value=4e-178) genomic_reference:SL2.40ch03 gene_region:29344306-29346072 transcript_region:SL2.40ch03:29344306..29346072- go_terms:GO:0005975 functional_description:"Galactose mutarotase-like (AHRD V1 **-- A2Q5N9_MEDTR); contains Interpro domain(s) IPR011013 Glycoside hydrolase-type carbohydrate-binding "; GO:0005975 NbS00019536g0013.1 protein AED:0.66 eAED:1.00 QI:0|0|0|0.75|1|0.5|4|0|147 NbS00001841g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|184; (*GB) gi|356576237|ref|XP_003556240.1| (e_value=8e-53) PREDICTED: DNL-type zinc finger protein-like [Glycine max];; (*SWP) sp|Q0IH40|DNLZ_XENLA (e_value=6e-18) DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1;; (*TAIR) AT3G54826.1 (e_value=4e-47) | Symbols: | Zim17-type zinc finger protein | chr3:20310354-20311652 FORWARD LENGTH=223;; (*ITAG) Solyc05g053250.2.1 (e_value=1e-74) genomic_reference:SL2.40ch05 gene_region:62536961-62539494 transcript_region:SL2.40ch05:62536961..62539494+ functional_description:"DNL zinc finger family protein (AHRD V1 ***- B6TQA5_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00049003g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|740; (*GB) gi|225439819|ref|XP_002277271.1| (e_value=0.0) PREDICTED: ABC transporter G family member 2 [Vitis vinifera];; (*SWP) sp|Q9FNB5|AB6G_ARATH (e_value=0.0) ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1;; (*TAIR) AT5G13580.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:4370879-4373062 FORWARD LENGTH=727;; (*ITAG) Solyc09g005970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:665866-668082 transcript_region:SL2.40ch09:665866..668082+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 2 (AHRD V1 ***- AB2G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00049003g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.66|0.66|0.5|0.66|3|78|192; (*GB) gi|359481499|ref|XP_002274085.2| (e_value=2e-54) PREDICTED: uncharacterized protein LOC100253341 [Vitis vinifera];; (*TAIR) AT3G53490.1 (e_value=8e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19832666-19834024 FORWARD LENGTH=225;; (*ITAG) Solyc09g005960.2.1 (e_value=7e-78) genomic_reference:SL2.40ch09 gene_region:659307-663477 transcript_region:SL2.40ch09:659307..663477+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049003g0018.1 protein AED:0.32 eAED:0.33 QI:194|0.75|0.6|1|0.75|1|5|0|199; (*GB) gi|224088603|ref|XP_002308492.1| (e_value=5e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02710.1 (e_value=1e-63) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:612628-613480 FORWARD LENGTH=176;; (*ITAG) Solyc09g006000.2.1 (e_value=1e-108) genomic_reference:SL2.40ch09 gene_region:679753-681517 transcript_region:SL2.40ch09:679753..681517- functional_description:"Fe-S-cluster oxidoreductase-like (AHRD V1 ***- D8LKL6_ECTSI); contains Interpro domain(s) IPR005358 Uncharacterised protein family UPF0153 "; NbS00049003g0017.1 protein AED:0.39 eAED:0.45 QI:69|0.4|0.33|0.83|0.4|0.66|6|0|243; (*GB) gi|388495254|gb|AFK35693.1| (e_value=3e-39) unknown [Lotus japonicus];; (*SWP) sp|Q9FYB7|RSZ32_ARATH (e_value=5e-39) Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1;; (*TAIR) AT3G53500.2 (e_value=4e-40) | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:19834557-19836507 REVERSE LENGTH=284;; (*ITAG) Solyc09g005980.2.1 (e_value=2e-50) genomic_reference:SL2.40ch09 gene_region:670381-673543 transcript_region:SL2.40ch09:670381..673543+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 6 (AHRD V1 *--- B6T453_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0008270,GO:0000166 NbS00049003g0002.1 protein AED:0.06 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|514; (*GB) gi|224140139|ref|XP_002323442.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUT4|PP192_ARATH (e_value=8e-167) Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1;; (*TAIR) AT2G37320.1 (e_value=6e-168) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15667223-15668725 FORWARD LENGTH=500;; (*ITAG) Solyc09g005990.2.1 (e_value=2e-177) genomic_reference:SL2.40ch09 gene_region:677639-679169 transcript_region:SL2.40ch09:677639..679169+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00000231g0005.1 protein AED:0.18 eAED:0.20 QI:82|0.89|0.9|1|0.94|0.95|20|363|699; (*GB) gi|359476862|ref|XP_002262862.2| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 35-like [Vitis vinifera];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=0.0) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc03g033400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9246433-9256147 transcript_region:SL2.40ch03:9246433..9256147+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00007566g0013.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|79; (*ITAG) Solyc09g098370.2.1 (e_value=2e-15) genomic_reference:SL2.40ch09 gene_region:67473224-67484653 transcript_region:SL2.40ch09:67473224..67484653+ go_terms:GO:0005515 functional_description:"VRR-NUC domain-containing protein (AHRD V1 ***- C5GD44_AJEDR); contains Interpro domain(s) IPR014883 VRR-NUC "; GO:0005515 NbS00007566g0017.1 protein AED:0.27 eAED:0.27 QI:267|1|1|1|0.85|0.75|8|260|269; (*GB) gi|255586521|ref|XP_002533899.1| (e_value=2e-161) TGF-beta-inducible nuclear protein, putative [Ricinus communis];; (*SWP) sp|Q54GN8|NSA2_DICDI (e_value=5e-130) Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1;; (*TAIR) AT5G06360.1 (e_value=3e-156) | Symbols: | Ribosomal protein S8e family protein | chr5:1944835-1946512 FORWARD LENGTH=260;; (*ITAG) Solyc09g098360.2.1 (e_value=1e-170) genomic_reference:SL2.40ch09 gene_region:67468841-67472791 transcript_region:SL2.40ch09:67468841..67472791+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosome biogenesis protein NSA2 (AHRD V1 **** D0MUX0_PHYIN); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00007566g0014.1 protein AED:0.32 eAED:0.32 QI:0|1|0.93|1|0.92|0.93|15|0|511; (*GB) gi|332371914|dbj|BAK22407.1| (e_value=0.0) glucose-6-phosphate dehydrogenase [Nicotiana benthamiana];; (*SWP) sp|P37830|G6PD_SOLTU (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1;; (*TAIR) AT5G40760.1 (e_value=0.0) | Symbols: G6PD6 | glucose-6-phosphate dehydrogenase 6 | chr5:16311284-16314556 FORWARD LENGTH=515;; (*ITAG) Solyc02g093830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49113784-49119691 transcript_region:SL2.40ch02:49113784..49119691+ go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** Q2XTC4_SOLTU); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00007566g0011.1 protein AED:0.34 eAED:0.34 QI:162|1|1|1|0.85|0.75|8|233|249; (*GB) gi|225452198|ref|XP_002266652.1| (e_value=6e-77) PREDICTED: tether containing UBX domain for GLUT4-like [Vitis vinifera];; (*SWP) sp|Q9BZE9|ASPC1_HUMAN (e_value=6e-14) Tether containing UBX domain for GLUT4 OS=Homo sapiens GN=ASPSCR1 PE=1 SV=1;; (*TAIR) AT3G27310.1 (e_value=2e-71) | Symbols: PUX1 | plant UBX domain-containing protein 1 | chr3:10087360-10089077 REVERSE LENGTH=251;; (*ITAG) Solyc02g093820.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:49106426-49112713 transcript_region:SL2.40ch02:49106426..49112713+ functional_description:"UBX domain-containing protein (AHRD V1 *-*- D3BSC7_POLPA); contains Interpro domain(s) IPR001012 UBX "; NbS00007566g0015.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|105; (*GB) gi|164597830|ref|NP_084723.2| (e_value=3e-55) cytochrome b6 [Oenothera elata subsp. hookeri];; (*SWP) sp|Q9MTJ5|CYB6_OENEH (e_value=9e-57) Cytochrome b6 OS=Oenothera elata subsp. hookeri GN=petB PE=3 SV=2;; (*ITAG) ATCG00720.1 (e_value=9e-58) | Symbols: PETB | photosynthetic electron transfer B | chrC:74841-76292 FORWARD LENGTH=215;; (*ITAG) Solyc01g007530.2.1 (e_value=9e-58) genomic_reference:SL2.40ch01 gene_region:1872279-1874091 transcript_region:SL2.40ch01:1872279..1874091+ go_terms:GO:0003954 functional_description:"Cytochrome b6 (AHRD V1 ***- B3TN79_BRADI); contains Interpro domain(s) IPR005797 Cytochrome b/b6, N-terminal "; GO:0003954 NbS00050828g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|1|1|3|0|108; (*GB) gi|388492952|gb|AFK34542.1| (e_value=8e-63) unknown [Lotus japonicus];; (*SWP) sp|Q9M2S7|FK201_ARATH (e_value=1e-60) Peptidyl-prolyl cis-trans isomerase FKBP20-1 OS=Arabidopsis thaliana GN=FKBP20-1 PE=2 SV=1;; (*TAIR) AT3G55520.1 (e_value=7e-62) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:20594177-20595128 FORWARD LENGTH=190;; (*ITAG) Solyc04g011620.2.1 (e_value=2e-76) genomic_reference:SL2.40ch04 gene_region:4053218-4058441 transcript_region:SL2.40ch04:4053218..4058441- go_terms:GO:0005528 functional_description:"FK506-binding protein 5(PEPTIDYL-PROLYL CIS-TRANS ISOMERASE) (AHRD V1 **-* Q98S76_GUITH); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00006529g0007.1 protein AED:0.02 eAED:0.02 QI:450|1|0.8|1|0.5|0.6|5|622|390; (*GB) gi|224109644|ref|XP_002315265.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=0.0) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00031837g0014.1 protein AED:0.27 eAED:0.27 QI:260|0|1|1|0|0.5|2|417|127; (*ITAG) Solyc06g082380.2.1 (e_value=5e-34) genomic_reference:SL2.40ch06 gene_region:44505351-44507339 transcript_region:SL2.40ch06:44505351..44507339- functional_description:"Unknown Protein (AHRD V1)"; NbS00031837g0005.1 protein AED:0.27 eAED:0.28 QI:1586|0.66|0.75|1|0.66|0.5|4|0|86; (*GB) gi|224064069|ref|XP_002301376.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G14620.2 (e_value=2e-19) | Symbols: DECOY | decoy | chr1:5014985-5016501 REVERSE LENGTH=220;; (*ITAG) Solyc09g075370.2.1 (e_value=2e-23) genomic_reference:SL2.40ch09 gene_region:62589136-62593044 transcript_region:SL2.40ch09:62589136..62593044+ functional_description:"Mitochondrial ribosomal protein L46 (AHRD V1 ***- B0X635_CULQU)"; NbS00031837g0009.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|1|1|3|0|228; (*GB) gi|225439902|ref|XP_002279598.1| (e_value=5e-132) PREDICTED: elongation factor 1-alpha [Vitis vinifera];; (*SWP) sp|O49169|EF1A_MANES (e_value=4e-133) Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1;; (*TAIR) AT5G60390.3 (e_value=2e-133) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=3e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00031837g0019.1 protein AED:0.16 eAED:0.16 QI:132|1|0.9|1|0.88|1|10|0|362; (*GB) gi|297745798|emb|CBI15854.3| (e_value=9e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G30280.1 (e_value=3e-54) | Symbols: RDM4, DMS4 | RNA-directed DNA methylation 4 | chr2:12909804-12911860 REVERSE LENGTH=346;; (*ITAG) Solyc06g082390.2.1 (e_value=4e-137) genomic_reference:SL2.40ch06 gene_region:44508767-44513236 transcript_region:SL2.40ch06:44508767..44513236+ go_terms:GO:0003700 functional_description:"cDNA clone J065191E12 full insert sequence (AHRD V1 ***- B7F8Y2_ORYSJ)"; GO:0003700 NbS00031837g0016.1 protein AED:0.18 eAED:0.18 QI:124|0.45|0.41|0.83|0.54|0.5|12|393|771; (*GB) gi|255586314|ref|XP_002533808.1| (e_value=6e-133) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=2e-71) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16870.1 (e_value=4e-119) | Symbols: | mitochondrial 28S ribosomal protein S29-related | chr1:5770964-5773157 REVERSE LENGTH=480;; (*ITAG) Solyc06g082370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44499210-44505243 transcript_region:SL2.40ch06:44499210..44505243+ functional_description:"Os07g0202900 protein (Fragment) (AHRD V1 ***- Q0D7X1_ORYSJ); contains Interpro domain(s) IPR019368 Ribosomal protein S23/S29, mitochondrial "; NbS00042772g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.71|0.62|0.87|0.85|1|8|363|458; (*GB) gi|225461726|ref|XP_002285515.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245328 [Vitis vinifera];; (*TAIR) AT3G14860.2 (e_value=2e-178) | Symbols: | NHL domain-containing protein | chr3:4998591-5000894 REVERSE LENGTH=493;; (*ITAG) Solyc07g062300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62286368-62290258 transcript_region:SL2.40ch07:62286368..62290258- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7L380_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00042772g0006.1 protein AED:0.41 eAED:0.41 QI:251|1|0.66|1|0.5|0.33|3|0|94; (*GB) gi|224117000|ref|XP_002317449.1| (e_value=4e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53400.1 (e_value=2e-39) | Symbols: | Ubiquitin domain-containing protein | chr1:19925009-19926400 FORWARD LENGTH=114;; (*ITAG) Solyc07g062290.2.1 (e_value=7e-45) genomic_reference:SL2.40ch07 gene_region:62282849-62285078 transcript_region:SL2.40ch07:62282849..62285078- go_terms:GO:0005515 functional_description:"Ubiquitin domain containing 1 (AHRD V1 ***- B6T693_MAIZE)"; GO:0005515 NbS00006089g0012.1 protein AED:0.28 eAED:0.30 QI:0|0.66|0.5|1|0.33|0.5|4|571|521; (*GB) gi|225432664|ref|XP_002278494.1| (e_value=1e-146) PREDICTED: uncharacterized protein LOC100259596 [Vitis vinifera];; (*TAIR) AT3G22430.1 (e_value=1e-126) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | chr3:7953455-7957605 FORWARD LENGTH=510;; (*ITAG) Solyc09g076040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63216517-63225104 transcript_region:SL2.40ch09:63216517..63225104+ functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 homolog (AHRD V1 *--- SGS3_ORYSJ); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00006089g0011.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|224102063|ref|XP_002312530.1| (e_value=3e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05385.1 (e_value=6e-22) | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa protein-related | chr1:1582747-1583648 REVERSE LENGTH=199;; (*ITAG) Solyc09g076030.2.1 (e_value=8e-51) genomic_reference:SL2.40ch09 gene_region:63211160-63214384 transcript_region:SL2.40ch09:63211160..63214384- functional_description:"Chromosome 04 contig 1 DNA sequence (AHRD V1 *-*- Q01AH6_OSTTA)"; NbS00028328g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|640; (*GB) gi|356565309|ref|XP_003550884.1| (e_value=2e-174) PREDICTED: subtilisin-like protease SDD1-like [Glycine max];; (*SWP) sp|O65351|SUBL_ARATH (e_value=7e-109) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=5e-110) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g079980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60526887-60529157 transcript_region:SL2.40ch08:60526887..60529157+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00028328g0003.1 protein AED:0.32 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|342; (*GB) gi|4200338|emb|CAA76726.1| (e_value=3e-86) P69C protein [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-33) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=2e-39) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc08g079860.1.1 (e_value=3e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60460267-60462504 transcript_region:SL2.40ch08:60460267..60462504+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00028328g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|247; (*GB) gi|3413481|emb|CAA07250.1| (e_value=1e-134) serine protease [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-52) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=7e-59) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc08g079840.1.1 (e_value=3e-137) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:60449457-60451700 transcript_region:SL2.40ch08:60449457..60451700- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00028328g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|3183991|emb|CAA06414.1| (e_value=2e-84) P69F protein [Solanum lycopersicum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=3e-23) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT3G14067.1 (e_value=6e-28) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc08g079850.1.1 (e_value=4e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60454659-60456902 transcript_region:SL2.40ch08:60454659..60456902- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0004252 NbS00002589g0006.1 protein AED:0.00 eAED:0.00 QI:127|1|1|1|1|1|2|94|90; (*GB) gi|350537357|ref|NP_001234290.1| (e_value=8e-22) transcription factor style2.1 [Solanum lycopersicum];; (*TAIR) AT5G39860.1 (e_value=6e-20) | Symbols: PRE1, BNQ1, BHLH136 | basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:15957689-15958303 FORWARD LENGTH=92;; (*ITAG) Solyc02g087860.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:44703917-44705649 transcript_region:SL2.40ch02:44703917..44705649- go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00021014g0003.1 protein AED:0.01 eAED:0.01 QI:1191|1|1|1|1|1|3|96|170; (*GB) gi|359476049|ref|XP_002281624.2| (e_value=9e-22) PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Vitis vinifera];; (*TAIR) AT4G32700.2 (e_value=4e-13) | Symbols: | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154;; (*ITAG) Solyc08g068110.1.1 (e_value=9e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54397233-54403307 transcript_region:SL2.40ch08:54397233..54403307+ go_terms:GO:0008026 functional_description:"DEAD box helicase (AHRD V1 *-*- D7FM15_ECTSI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00030906g0001.1 protein AED:0.29 eAED:0.32 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|297841795|ref|XP_002888779.1| (e_value=1e-28) hypothetical protein ARALYDRAFT_476162 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G70420.1 (e_value=4e-30) | Symbols: | Protein of unknown function (DUF1645) | chr1:26539840-26540658 REVERSE LENGTH=272;; (*ITAG) Solyc05g005260.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:208914-209765 transcript_region:SL2.40ch05:208914..209765- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00052159g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.88|1|0.75|0.77|9|522|555; (*GB) gi|225441391|ref|XP_002278205.1| (e_value=0.0) PREDICTED: TBCC domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q08AV6|TBCC1_XENLA (e_value=1e-30) TBCC domain-containing protein 1 OS=Xenopus laevis GN=tbccd1 PE=2 SV=1;; (*TAIR) AT3G57890.1 (e_value=0.0) | Symbols: | Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573;; (*ITAG) Solyc10g080440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61036122-61045515 transcript_region:SL2.40ch10:61036122..61045515+ go_terms:GO:0005488 functional_description:"TBCC domain-containing protein 1 (AHRD V1 ***- TBCC1_XENTR); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0005488 NbS00043235g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|340; (*GB) gi|158564570|gb|ABW74473.1| (e_value=4e-95) CXE carboxylesterase [Paeonia suffruticosa];; (*SWP) sp|Q9SMM9|CXE13_ARATH (e_value=4e-75) Probable carboxylesterase 13 OS=Arabidopsis thaliana GN=CXE13 PE=2 SV=1;; (*TAIR) AT3G48700.1 (e_value=3e-76) | Symbols: ATCXE13, CXE13 | carboxyesterase 13 | chr3:18038825-18039814 REVERSE LENGTH=329;; (*ITAG) Solyc04g079190.2.1 (e_value=4e-84) genomic_reference:SL2.40ch04 gene_region:61337920-61339311 transcript_region:SL2.40ch04:61337920..61339311+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00021547g0004.1 protein AED:0.17 eAED:0.17 QI:277|1|1|1|0.88|0.9|10|602|316; (*GB) gi|255565297|ref|XP_002523640.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q54D08|LST8_DICDI (e_value=4e-133) Protein LST8 homolog OS=Dictyostelium discoideum GN=lst8 PE=1 SV=1;; (*TAIR) AT3G18140.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:6212743-6214567 REVERSE LENGTH=305;; (*ITAG) Solyc03g059310.2.1 (e_value=9e-177) genomic_reference:SL2.40ch03 gene_region:26021002-26031019 transcript_region:SL2.40ch03:26021002..26031019+ go_terms:GO:0005515 functional_description:"WD-40 repeat family protein (AHRD V1 **-- Q5D6Y8_GOSHI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00048548g0003.1 protein AED:0.21 eAED:0.21 QI:317|1|0.92|1|0.91|0.84|13|0|415; (*GB) gi|728626|emb|CAA88492.1| (e_value=0.0) TAF-2 [Nicotiana tabacum];; (*SWP) sp|Q99142|TAF1_TOBAC (e_value=2e-169) Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1;; (*TAIR) AT2G46270.1 (e_value=2e-87) | Symbols: GBF3 | G-box binding factor 3 | chr2:19000859-19002901 FORWARD LENGTH=382;; (*ITAG) Solyc01g095460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78463593-78470070 transcript_region:SL2.40ch01:78463593..78470070+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00008595g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|119 NbS00008595g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|1|0.8|5|0|345; (*GB) gi|225446761|ref|XP_002278350.1| (e_value=3e-169) PREDICTED: pentatricopeptide repeat-containing protein At3g59040 [Vitis vinifera];; (*SWP) sp|Q9LYT2|PP287_ARATH (e_value=3e-151) Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2;; (*TAIR) AT3G59040.1 (e_value=3e-152) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21821495-21824233 REVERSE LENGTH=583;; (*ITAG) Solyc07g043600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54872270-54879482 transcript_region:SL2.40ch07:54872270..54879482+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LWA0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008595g0005.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|1|1|2|0|66; (*GB) gi|209954725|dbj|BAG80553.1| (e_value=7e-17) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*ITAG) Solyc11g007450.1.1 (e_value=6e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1752374-1753432 transcript_region:SL2.40ch11:1752374..1753432+ go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *--- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00018604g0003.1 protein AED:0.04 eAED:0.04 QI:118|1|1|1|1|1|2|333|266; (*GB) gi|224074843|ref|XP_002304466.1| (e_value=4e-41) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9FJ90|ERF25_ARATH (e_value=2e-38) Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1;; (*TAIR) AT5G52020.1 (e_value=2e-39) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232;; (*ITAG) Solyc08g080290.2.1 (e_value=5e-65) genomic_reference:SL2.40ch08 gene_region:60773586-60774903 transcript_region:SL2.40ch08:60773586..60774903- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00016801g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|67; (*GB) gi|296084596|emb|CBI25617.3| (e_value=1e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=5e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=1e-27) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=7e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00016801g0010.1 protein AED:0.19 eAED:0.22 QI:0|0.75|0.55|1|0.75|0.88|9|0|389; (*GB) gi|356540508|ref|XP_003538730.1| (e_value=1e-149) PREDICTED: sec14 cytosolic factor-like [Glycine max];; (*SWP) sp|Q10137|SEC14_SCHPO (e_value=5e-47) Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=2 SV=1;; (*TAIR) AT5G47510.1 (e_value=7e-127) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr5:19275048-19276999 FORWARD LENGTH=376;; (*ITAG) Solyc08g078680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59625928-59629228 transcript_region:SL2.40ch08:59625928..59629228+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7MP40_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00016801g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|395; (*GB) gi|359474399|ref|XP_003631454.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=2e-30) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT4G16563.1 (e_value=3e-152) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:9329933-9331432 REVERSE LENGTH=499;; (*ITAG) Solyc08g078670.2.1 (e_value=2e-175) genomic_reference:SL2.40ch08 gene_region:59615831-59617757 transcript_region:SL2.40ch08:59615831..59617757+ go_terms:GO:0006508 functional_description:"Aspartyl protease (AHRD V1 **-- B8YIB7_MIRJA); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00016801g0011.1 protein AED:0.60 eAED:0.63 QI:0|0|0|0.5|0|0.5|2|0|109 NbS00016801g0009.1 protein AED:0.65 eAED:0.67 QI:0|0|0|0.5|0|0.5|2|0|65; (*ITAG) Solyc08g078680.2.1 (e_value=2e-16) genomic_reference:SL2.40ch08 gene_region:59625928-59629228 transcript_region:SL2.40ch08:59625928..59629228+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7MP40_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00016801g0115.1 protein AED:0.20 eAED:0.20 QI:391|0.66|0.5|1|0.66|0.5|4|0|339 NbS00016801g0109.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|122 NbS00016801g0114.1 protein AED:0.49 eAED:0.49 QI:0|0.5|0|0.66|1|1|3|0|156 NbS00016801g0116.1 protein AED:0.25 eAED:0.25 QI:354|0.84|0.85|1|0.76|0.85|14|337|528 NbS00037229g0003.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0.28|0.85|0.33|0.71|7|988|235; (*GB) gi|255574680|ref|XP_002528249.1| (e_value=3e-65) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93ZB1|LOL1_ARATH (e_value=1e-60) Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1;; (*TAIR) AT1G32540.3 (e_value=9e-62) | Symbols: LOL1 | lsd one like 1 | chr1:11768043-11769591 FORWARD LENGTH=154;; (*ITAG) Solyc08g077060.2.1 (e_value=3e-67) genomic_reference:SL2.40ch08 gene_region:58161888-58166163 transcript_region:SL2.40ch08:58161888..58166163- go_terms:GO:0003700 functional_description:"Zinc finger protein LSD1 (AHRD V1 **-- Q6QUK7_ORYSJ); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; GO:0003700 NbS00006262g0002.1 protein AED:0.31 eAED:0.39 QI:0|0|0|1|1|1|2|0|79; (*GB) gi|222631727|gb|EEE63859.1| (e_value=1e-42) hypothetical protein OsJ_18683 [Oryza sativa Japonica Group];; (*SWP) sp|Q402E1|H32_LILLO (e_value=9e-44) Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3;; (*TAIR) AT5G65360.1 (e_value=9e-45) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc01g079110.2.1 (e_value=7e-45) genomic_reference:SL2.40ch01 gene_region:70680757-70681377 transcript_region:SL2.40ch01:70680757..70681377+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00035377g0021.1 protein AED:0.09 eAED:0.09 QI:449|0.85|0.87|1|0.85|1|8|294|234; (*GB) gi|350535683|ref|NP_001234463.1| (e_value=7e-151) uncharacterized protein LOC543655 [Solanum lycopersicum];; (*SWP) sp|Q9LQ73|PX11C_ARATH (e_value=2e-144) Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1;; (*TAIR) AT1G01820.1 (e_value=2e-145) | Symbols: PEX11C | peroxin 11c | chr1:296213-297723 REVERSE LENGTH=235;; (*ITAG) Solyc10g017850.2.1 (e_value=1e-153) genomic_reference:SL2.40ch10 gene_region:6046481-6049651 transcript_region:SL2.40ch10:6046481..6049651+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-1 (AHRD V1 ***- PX111_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00035377g0020.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|1|2|0|551; (*GB) gi|255541460|ref|XP_002511794.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|O22193|PUB4_ARATH (e_value=4e-15) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G45720.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:18834468-18836129 FORWARD LENGTH=553;; (*ITAG) Solyc01g091740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77085765-77088074 transcript_region:SL2.40ch01:77085765..77088074- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LD78_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00035377g0018.1 protein AED:0.18 eAED:0.19 QI:0|0.7|0.54|0.90|0.8|0.72|11|133|702; (*GB) gi|225455449|ref|XP_002279638.1| (e_value=8e-109) PREDICTED: F-box protein At4g00755-like [Vitis vinifera];; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=2e-82) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=1e-83) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc01g091710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77067916-77072922 transcript_region:SL2.40ch01:77067916..77072922+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)"; NbS00012673g0008.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0.14|0.25|8|0|907; (*GB) gi|359473525|ref|XP_003631315.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265010 [Vitis vinifera];; (*SWP) sp|O15050|TRNK1_HUMAN (e_value=3e-36) TPR and ankyrin repeat-containing protein 1 OS=Homo sapiens GN=TRANK1 PE=2 SV=4;; (*ITAG) Solyc03g006480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1060111-1071427 transcript_region:SL2.40ch03:1060111..1071427- go_terms:GO:0016787 functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY); contains Interpro domain(s) IPR014016 Helicase, superfamily 1, UvrD-related "; GO:0016787 NbS00012673g0001.1 protein AED:0.32 eAED:0.32 QI:2|1|1|1|1|1|3|363|192; (*GB) gi|350537475|ref|NP_001234039.1| (e_value=4e-124) expressed predominantly in leaves [Solanum lycopersicum];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=4e-25) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=7e-93) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc03g006490.2.1 (e_value=9e-130) genomic_reference:SL2.40ch03 gene_region:1074627-1077380 transcript_region:SL2.40ch03:1074627..1077380+ functional_description:"Aluminum-induced protein-like (AHRD V1 ***- Q9FG81_ARATH)"; NbS00012673g0004.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.33|1|1|3|0|132; (*GB) gi|90403727|gb|ABD93757.1| (e_value=3e-34) RNA polymerase beta chain [Nicotiana tabacum];; (*SWP) sp|Q2MIB0|RPOC2_SOLLC (e_value=1e-35) DNA-directed RNA polymerase subunit beta'' OS=Solanum lycopersicum GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=7e-29) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc08g028910.1.1 (e_value=8e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21741335-21741964 transcript_region:SL2.40ch08:21741335..21741964- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW93_LIQST)"; NbS00003385g0006.1 protein AED:0.14 eAED:0.15 QI:0|0.83|0.85|1|1|1|7|462|715; (*GB) gi|225448586|ref|XP_002278231.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253544 [Vitis vinifera];; (*TAIR) AT2G40400.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF399 and DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735;; (*ITAG) Solyc06g050620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29849301-29856781 transcript_region:SL2.40ch06:29849301..29856781+ functional_description:"Genome sequencing data contig C226 (AHRD V1 *-*- A8Y9R7_MICAE); contains Interpro domain(s) IPR007314 Protein of unknown function DUF399 "; NbS00003385g0007.1 protein AED:0.14 eAED:0.14 QI:93|1|1|1|0.16|0.28|7|565|129; (*GB) gi|225448588|ref|XP_002274031.1| (e_value=5e-52) PREDICTED: arogenate dehydrogenase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q944B6|TYRA1_ARATH (e_value=5e-38) Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1;; (*TAIR) AT5G34930.1 (e_value=4e-39) | Symbols: | arogenate dehydrogenase | chr5:13233391-13235522 FORWARD LENGTH=640;; (*ITAG) Solyc06g050630.2.1 (e_value=3e-64) genomic_reference:SL2.40ch06 gene_region:29856972-29858783 transcript_region:SL2.40ch06:29856972..29858783- go_terms:GO:0008152,GO:0006571 functional_description:"Prephenate dehydrogenase family protein (AHRD V1 ***- D7KDI5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0006571 NbS00003385g0101.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|122 NbS00003385g0206.1 protein AED:0.34 eAED:0.34 QI:372|1|1|1|1|1|9|399|336 NbS00003385g0202.1 protein AED:0.39 eAED:0.39 QI:260|1|1|1|0.5|0.2|5|486|175 NbS00006508g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|379056270|dbj|BAL68175.1| (e_value=9e-119) ethylene response factor #231 [Nicotiana tabacum];; (*SWP) sp|Q9M8M5|ERF84_ARATH (e_value=1e-22) Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1;; (*TAIR) AT1G80580.1 (e_value=9e-24) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:30293558-30294328 FORWARD LENGTH=256;; (*ITAG) Solyc03g117230.1.1 (e_value=4e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60480763-60481521 transcript_region:SL2.40ch03:60480763..60481521- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 *-*- C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00006508g0023.1 protein AED:0.15 eAED:0.15 QI:403|1|0.9|1|0.88|0.9|10|0|446; (*GB) gi|297743614|emb|CBI36481.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0V7T5|Y1864_ARATH (e_value=1e-151) Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1;; (*TAIR) AT2G25220.1 (e_value=1e-168) | Symbols: | Protein kinase superfamily protein | chr2:10742918-10745540 REVERSE LENGTH=414;; (*ITAG) Solyc03g117180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60444590-60448232 transcript_region:SL2.40ch03:60444590..60448232- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00006508g0010.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|235 NbS00006508g0022.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|730|260; (*GB) gi|356557229|ref|XP_003546920.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100811711 [Glycine max];; (*ITAG) Solyc03g117210.2.1 (e_value=2e-84) genomic_reference:SL2.40ch03 gene_region:60461511-60465388 transcript_region:SL2.40ch03:60461511..60465388- functional_description:"Unknown Protein (AHRD V1)"; NbS00006508g0006.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|580; (*GB) gi|224075637|ref|XP_002304715.1| (e_value=8e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BH16|FBXL2_MOUSE (e_value=6e-21) F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=2 SV=1;; (*TAIR) AT1G80630.1 (e_value=2e-95) | Symbols: | RNI-like superfamily protein | chr1:30308879-30310615 REVERSE LENGTH=578;; (*ITAG) Solyc03g117200.2.1 (e_value=2e-52) genomic_reference:SL2.40ch03 gene_region:60457109-60459160 transcript_region:SL2.40ch03:60457109..60459160+ functional_description:"F-box family protein (AHRD V1 ***- B9GNT5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006508g0026.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|113 NbS00043020g0008.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|287|351; (*GB) gi|359474468|ref|XP_002277716.2| (e_value=8e-132) PREDICTED: zinc finger CCCH domain-containing protein 12-like [Vitis vinifera];; (*SWP) sp|Q84UQ3|C3H56_ORYSJ (e_value=2e-117) Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1;; (*TAIR) AT1G32360.1 (e_value=2e-117) | Symbols: | Zinc finger (CCCH-type) family protein | chr1:11673325-11675162 FORWARD LENGTH=384;; (*ITAG) Solyc06g072720.2.1 (e_value=4e-180) genomic_reference:SL2.40ch06 gene_region:41239040-41242945 transcript_region:SL2.40ch06:41239040..41242945- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 56 (AHRD V1 ***- C3H56_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00043020g0006.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|1|1|2|0|602; (*GB) gi|356534299|ref|XP_003535694.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Glycine max];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=2e-108) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=2e-109) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc07g053520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59268732-59270615 transcript_region:SL2.40ch07:59268732..59270615- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00017943g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|225443746|ref|XP_002265581.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100263463 [Vitis vinifera];; (*ITAG) Solyc03g006040.2.1 (e_value=5e-43) genomic_reference:SL2.40ch03 gene_region:726858-728983 transcript_region:SL2.40ch03:726858..728983+ go_terms:GO:0030528 functional_description:"DNA binding protein (AHRD V1 ***- B4FLH1_MAIZE)"; GO:0030528 NbS00024537g0008.1 protein AED:0.29 eAED:0.29 QI:60|0.90|0.83|1|1|1|12|0|639; (*GB) gi|359478737|ref|XP_002282837.2| (e_value=0.0) PREDICTED: GTPase Der-like [Vitis vinifera];; (*SWP) sp|Q8YZH7|DER_NOSS1 (e_value=1e-148) GTPase Der OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=der PE=3 SV=1;; (*TAIR) AT3G12080.1 (e_value=0.0) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663;; (*ITAG) Solyc11g065870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48525816-48539876 transcript_region:SL2.40ch11:48525816..48539876+ go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein engA (AHRD V1 ***- Q9LH58_ARATH); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0005525,GO:0005622 NbS00024537g0009.1 protein AED:0.38 eAED:0.43 QI:0|0.25|0.4|1|0.5|0.6|5|0|210; (*GB) gi|222624283|gb|EEE58415.1| (e_value=1e-64) hypothetical protein OsJ_09609 [Oryza sativa Japonica Group];; (*SWP) sp|Q8VXZ9|R47BP_ARATH (e_value=5e-55) Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1;; (*TAIR) AT5G19350.2 (e_value=4e-56) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421;; (*ITAG) Solyc11g065880.1.1 (e_value=7e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48541347-48547527 transcript_region:SL2.40ch11:48541347..48547527- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00014820g0003.1 protein AED:0.15 eAED:0.15 QI:210|0.87|1|1|1|1|9|267|288; (*GB) gi|257815169|gb|ACV69976.1| (e_value=0.0) NAD-dependent glyceraldehyde 3-P dehydrogenase [Solanum chacoense];; (*SWP) sp|P26520|G3PC_PETHY (e_value=0.0) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1;; (*TAIR) AT1G13440.2 (e_value=0.0) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc06g071920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40698421-40702286 transcript_region:SL2.40ch06:40698421..40702286- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00017418g0004.1 protein AED:0.25 eAED:0.25 QI:283|0.69|0.64|1|0.69|0.57|14|0|571; (*GB) gi|350537845|ref|NP_001234569.1| (e_value=0.0) sulfate transporter 2 [Solanum lycopersicum];; (*SWP) sp|Q9FEP7|SUT13_ARATH (e_value=0.0) Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=0.0) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc12g056930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48357856-48361185 transcript_region:SL2.40ch12:48357856..48361185+ go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter 2 (AHRD V1 ***- Q9AT47_SOLLC); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0016020,GO:0016021 NbS00042057g0004.1 protein AED:0.02 eAED:0.02 QI:349|1|1|1|0.5|0.4|5|642|202; (*GB) gi|351725075|ref|NP_001235544.1| (e_value=5e-70) uncharacterized protein LOC100527400 [Glycine max];; (*TAIR) AT1G56420.1 (e_value=1e-61) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21122772-21124234 REVERSE LENGTH=183;; (*ITAG) Solyc02g085920.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:43273017-43276340 transcript_region:SL2.40ch02:43273017..43276340- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q00YZ4_OSTTA)"; NbS00052630g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|369; (*GB) gi|93115319|gb|ABE98328.1| (e_value=3e-55) SRC2-like protein [Capsicum annuum];; (*TAIR) AT1G09070.1 (e_value=7e-34) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc01g099390.2.1 (e_value=4e-111) genomic_reference:SL2.40ch01 gene_region:81426019-81427337 transcript_region:SL2.40ch01:81426019..81427337- go_terms:GO:0005515 functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J6_NICBE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005515 NbS00012898g0011.1 protein AED:0.10 eAED:0.12 QI:0|0.66|0.42|1|0.83|0.85|7|191|324; (*GB) gi|297242519|gb|ADI24923.1| (e_value=2e-135) metal tolerance protein [Carica papaya];; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=3e-132) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=2e-111) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc12g100300.1.1 (e_value=6e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65413779-65415642 transcript_region:SL2.40ch12:65413779..65415642+ go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 ***- FIEF_KLEPN); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00012898g0005.1 protein AED:0.23 eAED:0.23 QI:353|0.5|0.2|0.8|0.75|0.6|5|0|245; (*GB) gi|255587731|ref|XP_002534375.1| (e_value=1e-108) Ubiquitin ligase SINAT2, putative [Ricinus communis];; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=2e-106) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1;; (*TAIR) AT3G58040.1 (e_value=1e-107) | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308;; (*ITAG) Solyc01g006190.2.1 (e_value=4e-140) genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00012898g0019.1 protein AED:0.38 eAED:0.40 QI:0|0.69|0.71|1|0.38|0.42|14|221|409; (*GB) gi|359489946|ref|XP_002268035.2| (e_value=3e-168) PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera];; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=1e-144) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2;; (*TAIR) AT2G44150.1 (e_value=1e-145) | Symbols: ASHH3, SDG7 | histone-lysine N-methyltransferase ASHH3 | chr2:18258863-18261003 FORWARD LENGTH=363;; (*ITAG) Solyc12g100290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65395458-65407145 transcript_region:SL2.40ch12:65395458..65407145+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00012898g0016.1 protein AED:0.28 eAED:0.29 QI:0|0.61|0.57|1|0.23|0.35|14|826|322; (*GB) gi|147766588|emb|CAN69523.1| (e_value=1e-141) hypothetical protein VITISV_040873 [Vitis vinifera];; (*SWP) sp|P29295|HRR25_YEAST (e_value=3e-21) Casein kinase I homolog HRR25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRR25 PE=1 SV=1;; (*TAIR) AT3G13670.1 (e_value=1e-137) | Symbols: | Protein kinase family protein | chr3:4469434-4473234 FORWARD LENGTH=703;; (*ITAG) Solyc12g100310.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65416223-65425269 transcript_region:SL2.40ch12:65416223..65425269- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9LID3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021167g0006.1 protein AED:0.08 eAED:0.12 QI:0|0.5|0.28|0.85|0.33|0.42|7|0|544; (*GB) gi|297746065|emb|CBI16121.3| (e_value=4e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13790.1 (e_value=4e-106) | Symbols: | XH/XS domain-containing protein | chr1:4727438-4730229 FORWARD LENGTH=736;; (*ITAG) Solyc06g005550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:588709-591934 transcript_region:SL2.40ch06:588709..591934+ functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E5_ZEAMP); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00021167g0005.1 protein AED:0.22 eAED:0.22 QI:61|1|1|1|1|1|3|225|260; (*GB) gi|350539003|ref|NP_001234881.1| (e_value=3e-168) expansin9 precursor [Solanum lycopersicum];; (*SWP) sp|O48818|EXPA4_ARATH (e_value=1e-155) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=1e-156) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g005560.2.1 (e_value=5e-171) genomic_reference:SL2.40ch06 gene_region:592513-595666 transcript_region:SL2.40ch06:592513..595666- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00020827g0002.1 protein AED:0.00 eAED:0.00 QI:275|0.66|0.75|1|0.66|1|4|119|626; (*GB) gi|225428969|ref|XP_002264153.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc10g049660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:41809625-41812564 transcript_region:SL2.40ch10:41809625..41812564- go_terms:GO:0005515,GO:0009416 functional_description:"Transposon protein Mutator sub-class (AHRD V1 **-- B6U1M7_MAIZE); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00004929g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|88; (*GB) gi|146742172|gb|ABQ42623.1| (e_value=3e-36) snakin-1 [Solanum chacoense];; (*SWP) sp|Q948Z4|SNAK1_SOLTU (e_value=2e-37) Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1;; (*TAIR) AT5G59845.1 (e_value=9e-30) | Symbols: | Gibberellin-regulated family protein | chr5:24111443-24111808 FORWARD LENGTH=89;; (*ITAG) Solyc12g042520.1.1 (e_value=4e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43316208-43316606 transcript_region:SL2.40ch12:43316208..43316606+ functional_description:"Gibberellin-regulated family protein (AHRD V1 **-- D7MT35_ARALY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00035922g0006.1 protein AED:0.33 eAED:0.33 QI:34|0.57|0.5|0.62|0.85|0.87|8|0|175; (*GB) gi|242035061|ref|XP_002464925.1| (e_value=1e-70) hypothetical protein SORBIDRAFT_01g028940 [Sorghum bicolor];; (*SWP) sp|Q20390|PPT1_CAEEL (e_value=5e-26) Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=7e-66) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc08g078260.1.1 (e_value=2e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59249310-59252580 transcript_region:SL2.40ch08:59249310..59252580+ go_terms:GO:0008474 functional_description:"Palmitoyl protein thioesterase family protein (AHRD V1 **** D7LRP2_ARALY); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00026787g0005.1 protein AED:0.12 eAED:0.20 QI:84|0.66|0.5|1|0.66|0.75|4|0|259; (*GB) gi|296088208|emb|CBI35723.3| (e_value=2e-136) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=2e-73) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=1e-74) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc11g009100.1.1 (e_value=1e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3211903-3218285 transcript_region:SL2.40ch11:3211903..3218285+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00054613g0011.1 protein AED:0.05 eAED:0.06 QI:140|0.66|0.25|1|1|1|4|0|444; (*GB) gi|224101077|ref|XP_002312133.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05840.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr5:1757268-1760458 REVERSE LENGTH=439;; (*ITAG) Solyc03g078650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44849174-44851754 transcript_region:SL2.40ch03:44849174..44851754+ functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00054613g0010.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0.5|0.33|3|0|164; (*GB) gi|5732912|gb|AAD49336.1|AF166277_1 (e_value=2e-81) low molecular weight heat-shock protein [Nicotiana tabacum];; (*SWP) sp|P27880|HSP12_MEDSA (e_value=6e-69) 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1;; (*TAIR) AT1G53540.1 (e_value=8e-69) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980510-19980983 FORWARD LENGTH=157;; (*ITAG) Solyc09g015020.1.1 (e_value=6e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7440133-7440597 transcript_region:SL2.40ch09:7440133..7440597+ go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00054613g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|315932718|gb|ADU55789.1| (e_value=1e-71) HSP18.1A [Citrullus lanatus];; (*SWP) sp|P19037|HS181_ARATH (e_value=3e-66) 18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1;; (*TAIR) AT5G59720.1 (e_value=2e-67) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161;; (*ITAG) Solyc09g015020.1.1 (e_value=4e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7440133-7440597 transcript_region:SL2.40ch09:7440133..7440597+ go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00031641g0006.1 protein AED:0.21 eAED:0.21 QI:317|0.92|0.92|1|1|1|14|495|606; (*GB) gi|2829792|sp|P93568.1|SSY1_SOLTU (e_value=0.0) RecName: Full=Soluble starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Soluble starch synthase I; Short=SS I; Flags: Precursor;; (*SWP) sp|P93568|SSY1_SOLTU (e_value=0.0) Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G24300.2 (e_value=0.0) | Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652;; (*ITAG) Solyc03g083090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46453496-46464681 transcript_region:SL2.40ch03:46453496..46464681- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D5MWN9_BACSU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbS00031641g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|225455362|ref|XP_002277435.1| (e_value=2e-61) PREDICTED: vesicle-associated membrane protein 727 [Vitis vinifera];; (*SWP) sp|Q84WF5|VAMPL_ARATH (e_value=1e-15) Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1;; (*TAIR) AT4G27840.1 (e_value=2e-42) | Symbols: | SNARE-like superfamily protein | chr4:13865268-13866050 REVERSE LENGTH=260;; (*ITAG) Solyc03g083070.1.1 (e_value=9e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:46450114-46450905 transcript_region:SL2.40ch03:46450114..46450905- go_terms:GO:0006810 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 *--- D7KE74_ARALY); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00009425g0004.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|176; (*GB) gi|147826932|emb|CAN68873.1| (e_value=7e-76) hypothetical protein VITISV_026576 [Vitis vinifera];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=2e-75) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=2e-76) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc06g082310.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:44463336-44464540 transcript_region:SL2.40ch06:44463336..44464540- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00009425g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|0.8|0.25|0.4|5|266|182; (*GB) gi|297745839|emb|CBI15895.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07060.1 (e_value=4e-15) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2167138-2168397 REVERSE LENGTH=233;; (*ITAG) Solyc06g082320.2.1 (e_value=2e-66) genomic_reference:SL2.40ch06 gene_region:44470958-44473727 transcript_region:SL2.40ch06:44470958..44473727- functional_description:"Unknown Protein (AHRD V1)"; NbS00011118g0011.1 protein AED:0.23 eAED:0.26 QI:146|0.72|0.58|1|0.81|0.83|12|0|463; (*GB) gi|255574091|ref|XP_002527961.1| (e_value=2e-20) hypothetical protein RCOM_0204720 [Ricinus communis];; (*TAIR) AT4G31430.2 (e_value=3e-15) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:15248510-15252204 FORWARD LENGTH=574;; (*ITAG) Solyc08g006480.2.1 (e_value=2e-74) genomic_reference:SL2.40ch08 gene_region:1068145-1081065 transcript_region:SL2.40ch08:1068145..1081065- functional_description:"Unknown Protein (AHRD V1)"; NbS00011118g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|4|0|136; (*GB) gi|356563788|ref|XP_003550141.1| (e_value=8e-39) PREDICTED: zinc finger protein 622-like [Glycine max];; (*TAIR) AT4G31420.1 (e_value=6e-35) | Symbols: | Zinc finger protein 622 | chr4:15245987-15247763 REVERSE LENGTH=404;; (*ITAG) Solyc12g096450.1.1 (e_value=3e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00011118g0007.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|1|1|2|0|91; (*GB) gi|356563788|ref|XP_003550141.1| (e_value=2e-22) PREDICTED: zinc finger protein 622-like [Glycine max];; (*TAIR) AT2G24500.1 (e_value=5e-19) | Symbols: FZF | Zinc finger protein 622 | chr2:10401259-10402805 REVERSE LENGTH=395;; (*ITAG) Solyc12g096450.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00008999g0021.1 protein AED:0.14 eAED:0.14 QI:180|1|1|1|0.57|0.62|8|200|639; (*GB) gi|356522474|ref|XP_003529871.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q8BH24|TM9S4_MOUSE (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc06g062590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35894121-35897787 transcript_region:SL2.40ch06:35894121..35897787- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00008999g0012.1 protein AED:0.26 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|335; (*GB) gi|255572937|ref|XP_002527399.1| (e_value=4e-63) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LRW1|LBD22_ARATH (e_value=8e-54) LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1;; (*TAIR) AT3G13850.1 (e_value=6e-55) | Symbols: LBD22 | LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268;; (*ITAG) Solyc06g062630.2.1 (e_value=2e-49) genomic_reference:SL2.40ch06 gene_region:35921702-35922211 transcript_region:SL2.40ch06:35921702..35922211- functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00008999g0022.1 protein AED:0.31 eAED:0.37 QI:458|0.5|0.6|1|0.71|0.66|15|0|498; (*GB) gi|225442335|ref|XP_002280910.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=0.0) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc06g062530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35834066-35845751 transcript_region:SL2.40ch06:35834066..35845751- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00008999g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|388503142|gb|AFK39637.1| (e_value=4e-14) unknown [Lotus japonicus]; NbS00008999g0023.1 protein AED:0.14 eAED:0.14 QI:177|0.83|0.84|1|0.83|0.84|19|606|803; (*GB) gi|183238710|gb|ACC60981.1| (e_value=0.0) beta-galactosidase 1 precursor [Petunia x hybrida];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc06g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35886685-35893053 transcript_region:SL2.40ch06:35886685..35893053+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B2LYJ3_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00008999g0003.1 protein AED:0.22 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|429; (*GB) gi|359482518|ref|XP_002279880.2| (e_value=9e-130) PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera];; (*SWP) sp|Q9LNP2|PPR47_ARATH (e_value=2e-103) Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1;; (*TAIR) AT1G17630.1 (e_value=2e-104) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6064525-6066720 FORWARD LENGTH=731;; (*ITAG) Solyc06g062610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35917241-35919433 transcript_region:SL2.40ch06:35917241..35919433+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KFH7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008999g0004.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|255572939|ref|XP_002527400.1| (e_value=7e-61) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LNP2|PPR47_ARATH (e_value=1e-45) Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1;; (*TAIR) AT1G17630.1 (e_value=9e-47) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6064525-6066720 FORWARD LENGTH=731;; (*ITAG) Solyc06g062610.1.1 (e_value=7e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35917241-35919433 transcript_region:SL2.40ch06:35917241..35919433+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KFH7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020867g0004.1 protein AED:0.06 eAED:0.06 QI:162|0.87|0.88|1|1|1|9|255|613; (*GB) gi|16903353|gb|AAL30454.1|AF362949_1 (e_value=0.0) endo-beta-1,4-glucanase precursor [Nicotiana tabacum];; (*SWP) sp|Q42059|GUN6_ARATH (e_value=0.0) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2;; (*TAIR) AT1G64390.1 (e_value=0.0) | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 | chr1:23911329-23914642 FORWARD LENGTH=620;; (*ITAG) Solyc08g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0030246,GO:0005576,GO:0005975,GO:0003824 NbS00025598g0003.1 protein AED:0.24 eAED:0.24 QI:151|0.5|0.44|1|1|1|9|0|684; (*GB) gi|297744647|emb|CBI37909.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9URY4|YI01_SCHPO (e_value=5e-70) Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=2 SV=1;; (*TAIR) AT4G34880.1 (e_value=1e-164) | Symbols: | Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466;; (*ITAG) Solyc01g111210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89303121-89308860 transcript_region:SL2.40ch01:89303121..89308860+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B6JZE9_SCHJY); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00025598g0004.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|60 NbS00056109g0001.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.5|1|0|2|0|184; (*ITAG) Solyc07g045450.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:55873619-55874629 transcript_region:SL2.40ch07:55873619..55874629- functional_description:"Unknown Protein (AHRD V1)"; NbS00002193g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|585; (*GB) gi|225425194|ref|XP_002264953.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259218 [Vitis vinifera];; (*SWP) sp|O54922|EXOC7_RAT (e_value=1e-19) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G13150.1 (e_value=0.0) | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo70 family protein C1 | chr5:4172969-4174930 REVERSE LENGTH=653;; (*ITAG) Solyc05g024340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:31197013-31198791 transcript_region:SL2.40ch05:31197013..31198791+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbC25643609g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|224120414|ref|XP_002331042.1| (e_value=1e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57880.1 (e_value=1e-80) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g078680.1.1 (e_value=5e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59742672-59744990 transcript_region:SL2.40ch10:59742672..59744990- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00012535g0111.1 protein AED:0.00 eAED:0.00 QI:140|1|1|1|1|1|3|613|299 NbS00012535g0112.1 protein AED:0.25 eAED:0.25 QI:163|0.92|0.85|1|0.76|0.85|14|297|451 NbS00008422g0005.1 protein AED:0.35 eAED:0.35 QI:0|1|1|1|0.85|0.62|8|258|307; (*GB) gi|255557249|ref|XP_002519655.1| (e_value=4e-144) Protease degS precursor, putative [Ricinus communis];; (*SWP) sp|Q9SEL7|DEGP5_ARATH (e_value=3e-127) Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3;; (*TAIR) AT4G18370.1 (e_value=2e-128) | Symbols: DEG5, DEGP5, HHOA | DEGP protease 5 | chr4:10149235-10151051 FORWARD LENGTH=323;; (*ITAG) Solyc08g048550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:40724238-40730507 transcript_region:SL2.40ch08:40724238..40730507- go_terms:GO:0004252 functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** A6CGY1_9PLAN); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "; GO:0004252 NbS00008422g0117.1 protein AED:0.29 eAED:0.29 QI:0|0.28|0.37|1|0|0|8|0|408 NbS00008422g0118.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.66|1|0.2|0.16|6|0|316 NbS00008422g0102.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|1|1|2|0|152 NbS00008422g0101.1 protein AED:0.41 eAED:0.84 QI:0|1|0.5|1|0|0|2|0|150 NbS00008422g0120.1 protein AED:0.41 eAED:0.41 QI:4|0|0|1|0|0|3|0|261 NbS00018390g0001.1 protein AED:0.42 eAED:0.44 QI:221|0|0.5|1|0|0.5|2|0|84; (*ITAG) Solyc01g080890.2.1 (e_value=3e-36) genomic_reference:SL2.40ch01 gene_region:72726646-72727265 transcript_region:SL2.40ch01:72726646..72727265+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018390g0005.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|105; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-21) hypothetical protein [Nicotiana tabacum]; NbS00018390g0006.1 protein AED:0.43 eAED:0.48 QI:0|0|0|0.66|0.5|0.33|3|0|114; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=3e-29) hypothetical protein [Nicotiana tabacum]; NbS00021843g0010.1 protein AED:0.03 eAED:0.03 QI:388|1|0.84|1|0.75|0.61|13|8|1427; (*GB) gi|334302903|sp|Q9FLQ7.3|FH20_ARATH (e_value=0.0) RecName: Full=Formin-like protein 20; Short=AtFH20;; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=0.0) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=0.0) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc03g115670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59365407-59367477 transcript_region:SL2.40ch03:59365407..59367477+ functional_description:"Formin 2B (AHRD V1 ***- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00021843g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.71|1|1|1|7|0|565; (*GB) gi|255547313|ref|XP_002514714.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=5e-178) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G74330.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27943618-27947109 REVERSE LENGTH=699;; (*ITAG) Solyc03g115660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59353774-59359756 transcript_region:SL2.40ch03:59353774..59359756+ go_terms:GO:0016301 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00033931g0004.1 protein AED:0.24 eAED:0.24 QI:249|1|1|1|1|1|3|171|109 NbS00052496g0019.1 protein AED:0.05 eAED:0.05 QI:84|0.66|0.75|1|0.33|0.5|4|243|93 NbS00052496g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.33|1|1|3|0|70 NbS00052496g0020.1 protein AED:0.12 eAED:0.21 QI:0|0|0.33|1|0.5|0.33|3|86|146; (*ITAG) Solyc01g006240.2.1 (e_value=2e-57) genomic_reference:SL2.40ch01 gene_region:860311-861340 transcript_region:SL2.40ch01:860311..861340- go_terms:GO:0005529 functional_description:"Myrosinase-binding protein-like At3g16440 (AHRD V1 **-* MB32_ARATH); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00052496g0022.1 protein AED:0.14 eAED:0.14 QI:251|1|0.75|1|0.66|0.5|4|383|154; (*GB) gi|224135587|ref|XP_002327255.1| (e_value=2e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6AWV1|POP5_ARATH (e_value=1e-69) Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1;; (*TAIR) AT1G04635.1 (e_value=8e-71) | Symbols: EMB1687 | ribonuclease P family protein / Rpp14 family protein | chr1:1291350-1291805 FORWARD LENGTH=151;; (*ITAG) Solyc01g006260.2.1 (e_value=6e-97) genomic_reference:SL2.40ch01 gene_region:868862-870137 transcript_region:SL2.40ch01:868862..870137+ go_terms:GO:0000171 functional_description:"Ribonuclease P/MRP protein subunit POP5 (AHRD V1 **** POP5_HUMAN); contains Interpro domain(s) IPR002759 Ribonuclease P-related "; GO:0000171 NbS00052496g0024.1 protein AED:0.17 eAED:0.17 QI:0|0.85|0.75|1|0.85|0.75|8|282|398; (*GB) gi|359495820|ref|XP_003635099.1| (e_value=0.0) PREDICTED: cysteine protease ATG4-like [Vitis vinifera];; (*SWP) sp|A2Q1V6|ATG4_MEDTR (e_value=9e-165) Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1;; (*TAIR) AT3G59950.1 (e_value=3e-161) | Symbols: | Peptidase family C54 protein | chr3:22144468-22146887 REVERSE LENGTH=477;; (*ITAG) Solyc01g006230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:853672-859412 transcript_region:SL2.40ch01:853672..859412+ go_terms:GO:0005515,GO:0004197 functional_description:"Cysteine protease (AHRD V1 **** A8NLD6_COPC7); contains Interpro domain(s) IPR005078 Peptidase C54 "; GO:0005515,GO:0004197 NbS00052496g0021.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.6|1|1|1|5|0|599; (*GB) gi|18403095|ref|NP_564571.1| (e_value=0.0) Formate--tetrahydrofolate ligase [Arabidopsis thaliana];; (*SWP) sp|Q9SPK5|FTHS_ARATH (e_value=0.0) Formate--tetrahydrofolate ligase OS=Arabidopsis thaliana GN=THFS PE=1 SV=1;; (*TAIR) AT1G50480.1 (e_value=0.0) | Symbols: THFS | 10-formyltetrahydrofolate synthetase | chr1:18702064-18704687 FORWARD LENGTH=634;; (*ITAG) Solyc01g006280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:874303-880944 transcript_region:SL2.40ch01:874303..880944+ go_terms:GO:0009396 functional_description:"Formate-tetrahydrofolate ligase (AHRD V1 ***- D0MR27_PHYIN); contains Interpro domain(s) IPR000559 Formate-tetrahydrofolate ligase, FTHFS "; GO:0009396 NbS00052496g0017.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|141; (*ITAG) Solyc09g083030.1.1 (e_value=3e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64105104-64105607 transcript_region:SL2.40ch09:64105104..64105607- go_terms:GO:0005529 functional_description:"Myrosinase binding protein (AHRD V1 **-* P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00005528g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|252; (*GB) gi|255546113|ref|XP_002514116.1| (e_value=7e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26110.1 (e_value=1e-21) | Symbols: | Protein of unknown function (DUF761) | chr2:11120869-11121798 FORWARD LENGTH=309;; (*ITAG) Solyc07g039380.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:44659424-44660201 transcript_region:SL2.40ch07:44659424..44660201+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020256g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|312281631|dbj|BAJ33681.1| (e_value=1e-39) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=4e-41) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=3e-42) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006450.1.1 (e_value=4e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1251302-1252609 transcript_region:SL2.40ch07:1251302..1252609+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00020256g0016.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0|0|5|0|744; (*GB) gi|326530426|dbj|BAJ97639.1| (e_value=3e-40) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=3e-41) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=2e-42) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1247767-1249215 transcript_region:SL2.40ch07:1247767..1249215+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00020256g0018.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|488; (*GB) gi|242041575|ref|XP_002468182.1| (e_value=8e-40) hypothetical protein SORBIDRAFT_01g041210 [Sorghum bicolor];; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=2e-39) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=5e-37) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1247767-1249215 transcript_region:SL2.40ch07:1247767..1249215+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00020256g0015.1 protein AED:0.04 eAED:0.14 QI:0|0|0|1|0|0|2|0|302; (*ITAG) Solyc07g006430.1.1 (e_value=1e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1245745-1247166 transcript_region:SL2.40ch07:1245745..1247166+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00020256g0019.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|248; (*ITAG) Solyc07g006470.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1257724-1259199 transcript_region:SL2.40ch07:1257724..1259199+ go_terms:GO:0003677,GO:0008233 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677,GO:0008233 NbS00022359g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|1|1|3|157|380; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=5e-135) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=4e-86) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT4G27460.1 (e_value=3e-87) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr4:13732939-13734263 FORWARD LENGTH=391;; (*ITAG) Solyc10g009010.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3040315-3046302 transcript_region:SL2.40ch10:3040315..3046302+ functional_description:"CBS domain containing protein-like (AHRD V1 **-- Q6ZIB3_ORYSJ); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00022359g0006.1 protein AED:0.30 eAED:0.31 QI:144|0.66|0.69|1|0.83|0.76|13|0|473; (*GB) gi|359497485|ref|XP_003635535.1| (e_value=3e-129) PREDICTED: uncharacterized protein LOC100854109 [Vitis vinifera];; (*SWP) sp|Q5E9M5|SNPC3_BOVIN (e_value=7e-25) snRNA-activating protein complex subunit 3 OS=Bos taurus GN=SNAPC3 PE=2 SV=1;; (*TAIR) AT1G28560.1 (e_value=5e-90) | Symbols: SRD2 | snRNA activating complex family protein | chr1:10038197-10040382 REVERSE LENGTH=375;; (*ITAG) Solyc10g009000.2.1 (e_value=7e-176) genomic_reference:SL2.40ch10 gene_region:3032476-3039132 transcript_region:SL2.40ch10:3032476..3039132+ go_terms:GO:0003677 functional_description:"snRNA-activating protein complex subunit 3 (AHRD V1 *-*- B0WT21_CULQU)"; GO:0003677 NbS00006224g0006.1 protein AED:0.00 eAED:0.00 QI:379|1|1|1|1|1|2|595|596; (*GB) gi|147826737|emb|CAN70653.1| (e_value=0.0) hypothetical protein VITISV_010023 [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=2e-141) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=1e-142) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc11g010220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3287916-3289927 transcript_region:SL2.40ch11:3287916..3289927- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006224g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.77|0.6|0.9|0.77|0.8|10|0|600; (*GB) gi|359480487|ref|XP_002275725.2| (e_value=0.0) PREDICTED: protein SCAI isoform 1 [Vitis vinifera];; (*SWP) sp|Q8N9R8|SCAI_HUMAN (e_value=2e-69) Protein SCAI OS=Homo sapiens GN=SCAI PE=1 SV=2;; (*TAIR) AT4G40050.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr4:18561206-18563727 REVERSE LENGTH=599;; (*ITAG) Solyc11g010240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3293989-3299838 transcript_region:SL2.40ch11:3293989..3299838- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_HUMAN)"; GO:0003714 NbS00006224g0007.1 protein AED:0.32 eAED:0.43 QI:327|0.6|0.66|0.83|0.6|0.66|6|0|143; (*GB) gi|319903976|gb|ADV77190.1| (e_value=2e-51) histone H3 [Boergesenia forbesii];; (*SWP) sp|Q71H73|H33_VITVI (e_value=5e-52) Histone H3.3 OS=Vitis vinifera PE=2 SV=3;; (*TAIR) AT5G10980.1 (e_value=4e-53) | Symbols: | Histone superfamily protein | chr5:3472591-3473349 REVERSE LENGTH=136;; (*ITAG) Solyc11g010230.1.1 (e_value=3e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3290641-3291380 transcript_region:SL2.40ch11:3290641..3291380- go_terms:GO:0003677,GO:0000786 functional_description:"Histone H3 (AHRD V1 ***- A8MRL0_ARATH); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0003677,GO:0000786 NbS00007812g0002.1 protein AED:0.83 eAED:0.86 QI:0|0|0.25|0.5|0.66|0.5|4|0|140 NbS00036973g0010.1 protein AED:0.53 eAED:0.67 QI:25|0|0.33|0.66|0|0|3|0|75 NbS00036973g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|337; (*GB) gi|224114541|ref|XP_002332355.1| (e_value=5e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R7R9|SNW1_PONAB (e_value=5e-80) SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1;; (*TAIR) AT1G77180.2 (e_value=1e-107) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613;; (*ITAG) Solyc12g008370.1.1 (e_value=1e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00036973g0008.1 protein AED:0.25 eAED:0.25 QI:422|0.5|0.4|1|0.75|0.8|5|0|385; (*GB) gi|356534653|ref|XP_003535867.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 49-like [Glycine max];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=2e-156) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.2 (e_value=1e-157) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=384;; (*ITAG) Solyc06g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3312201-3315959 transcript_region:SL2.40ch06:3312201..3315959- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase-2C (AHRD V1 ***- O82469_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00004923g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.9|0.81|1|0.9|0.90|11|442|667; (*GB) gi|359487320|ref|XP_003633566.1| (e_value=0.0) PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Vitis vinifera];; (*SWP) sp|Q08DQ2|GFPT2_BOVIN (e_value=0.0) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Bos taurus GN=GFPT2 PE=1 SV=1;; (*TAIR) AT3G24090.1 (e_value=0.0) | Symbols: | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971 REVERSE LENGTH=677;; (*ITAG) Solyc01g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising "; GO:0008152,GO:0005975,GO:0005737 NbS00004923g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|83 NbS00021519g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|359493151|ref|XP_003634523.1| (e_value=4e-34) PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera];; (*TAIR) AT4G09890.1 (e_value=2e-22) | Symbols: | Protein of unknown function (DUF3511) | chr4:6218501-6218764 FORWARD LENGTH=87;; (*ITAG) Solyc04g051470.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49730088-49730327 transcript_region:SL2.40ch04:49730088..49730327- functional_description:"Unknown Protein (AHRD V1)"; NbS00058996g0005.1 protein AED:0.33 eAED:0.33 QI:490|1|1|1|1|1|2|18|101 NbS00058996g0008.1 protein AED:0.38 eAED:0.39 QI:11|1|0.66|1|1|0.66|3|0|133; (*GB) gi|45935111|gb|AAS79569.1| (e_value=6e-29) hypothetical protein [Ipomoea trifida];; (*ITAG) Solyc01g096760.2.1 (e_value=3e-57) genomic_reference:SL2.40ch01 gene_region:79542130-79546287 transcript_region:SL2.40ch01:79542130..79546287- functional_description:"Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region "; NbS00046540g0005.1 protein AED:0.69 eAED:0.69 QI:6|0|0|0.5|0|0.5|2|0|35 NbS00046540g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|0.66|3|0|242; (*GB) gi|225430832|ref|XP_002273030.1| (e_value=5e-121) PREDICTED: minor allergen Alt a 7-like [Vitis vinifera];; (*SWP) sp|A4W916|WRBA_ENT38 (e_value=4e-57) Flavoprotein WrbA OS=Enterobacter sp. (strain 638) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G36750.1 (e_value=6e-117) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc03g034140.2.1 (e_value=8e-125) genomic_reference:SL2.40ch03 gene_region:10112093-10115080 transcript_region:SL2.40ch03:10112093..10115080+ go_terms:GO:0010181,GO:0050625 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0010181,GO:0050625 NbS00001298g0015.1 protein AED:0.13 eAED:0.13 QI:697|0.88|0.9|1|0.88|0.9|10|456|320; (*GB) gi|147866709|emb|CAN82646.1| (e_value=0.0) hypothetical protein VITISV_030551 [Vitis vinifera];; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=6e-20) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT2G27680.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:11803981-11805965 REVERSE LENGTH=384;; (*ITAG) Solyc11g067160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49978029-49981767 transcript_region:SL2.40ch11:49978029..49981767+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7LJ14_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00001298g0016.1 protein AED:0.32 eAED:0.37 QI:0|0.6|0.5|1|0.8|0.5|6|650|208; (*GB) gi|225436293|ref|XP_002265741.1| (e_value=8e-108) PREDICTED: uncharacterized protein LOC100246564 [Vitis vinifera];; (*TAIR) AT4G04190.2 (e_value=3e-97) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2024873-2026330 FORWARD LENGTH=184;; (*ITAG) Solyc11g067150.1.1 (e_value=1e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49971715-49974799 transcript_region:SL2.40ch11:49971715..49974799- functional_description:"Unknown Protein (AHRD V1)"; NbS00001298g0017.1 protein AED:0.09 eAED:0.09 QI:0|1|0.81|1|1|1|11|0|535; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=0.0) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*SWP) sp|Q9WVF7|DPOE1_MOUSE (e_value=2e-79) DNA polymerase epsilon catalytic subunit A OS=Mus musculus GN=Pole PE=2 SV=3;; (*TAIR) AT1G08260.1 (e_value=6e-165) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49959731-49970526 transcript_region:SL2.40ch11:49959731..49970526+ go_terms:GO:0005634 functional_description:"DNA polymerase (AHRD V1 ***- B9MYH6_POPTR); contains Interpro domain(s) IPR013697 Region of unknown function DUF1744 "; GO:0005634 NbC25601029g0002.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0|1|0|0.33|3|0|106; (*GB) gi|302142185|emb|CBI19388.3| (e_value=8e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WPE9|NAT7_ARATH (e_value=5e-30) Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2;; (*TAIR) AT1G60030.1 (e_value=4e-31) | Symbols: ATNAT7, NAT7 | nucleobase-ascorbate transporter 7 | chr1:22113993-22116648 REVERSE LENGTH=538;; (*ITAG) Solyc04g077730.1.1 (e_value=6e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60243690-60245301 transcript_region:SL2.40ch04:60243690..60245301- go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-- B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00003911g0001.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc01g107570.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:86840074-86840328 transcript_region:SL2.40ch01:86840074..86840328+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002554g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0.5|0.33|3|613|360; (*GB) gi|105923235|gb|ABF81465.1| (e_value=1e-26) TIR-NBS-LRR type disease resistance protein [Populus trichocarpa];; (*TAIR) AT1G27180.1 (e_value=5e-18) | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr1:9439859-9445818 FORWARD LENGTH=1556;; (*ITAG) Solyc09g007710.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:1257638-1262613 transcript_region:SL2.40ch09:1257638..1262613+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00002554g0107.1 protein AED:0.25 eAED:0.25 QI:465|1|0.9|1|1|1|10|399|399 NbS00013232g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|359476816|ref|XP_002265844.2| (e_value=2e-45) PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=3e-37) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT4G36040.1 (e_value=2e-38) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17049708-17050193 REVERSE LENGTH=161;; (*ITAG) Solyc02g062160.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28313777-28314241 transcript_region:SL2.40ch02:28313777..28314241- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00015155g0009.1 protein AED:0.12 eAED:0.13 QI:70|0.25|0.4|1|0|0.2|5|0|902; (*GB) gi|74273645|gb|ABA01490.1| (e_value=0.0) 3-ketoacyl-CoA synthase [Gossypium hirsutum];; (*SWP) sp|Q9XF43|KCS6_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1;; (*TAIR) AT1G68530.1 (e_value=0.0) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497;; (*ITAG) Solyc05g009280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3426725-3428812 transcript_region:SL2.40ch05:3426725..3428812+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00015155g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|110 NbS00015155g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|1|1|1|3|0|247; (*GB) gi|225423975|ref|XP_002282562.1| (e_value=2e-92) PREDICTED: uncharacterized protein LOC100242187 isoform 1 [Vitis vinifera];; (*TAIR) AT1G55170.1 (e_value=9e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). | chr1:20580578-20581706 FORWARD LENGTH=283;; (*ITAG) Solyc05g009290.2.1 (e_value=4e-139) genomic_reference:SL2.40ch05 gene_region:3428890-3430163 transcript_region:SL2.40ch05:3428890..3430163- functional_description:"Myosin-like protein (AHRD V1 **-- Q9C717_ARATH)"; NbS00025960g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.28|0.5|0.57|7|0|264; (*TAIR) AT3G53180.1 (e_value=8e-13) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc01g056430.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:47052435-47056399 transcript_region:SL2.40ch01:47052435..47056399+ go_terms:GO:0008152 functional_description:"Amidohydrolase family (AHRD V1 **-- B4VKN3_9CYAN); contains Interpro domain(s) IPR006992 Amidohydrolase 2 "; GO:0008152 NbS00025431g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|434; (*GB) gi|225434845|ref|XP_002280577.1| (e_value=7e-155) PREDICTED: uncharacterized protein LOC100244977 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=3e-126) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47924448-47926730 transcript_region:SL2.40ch11:47924448..47926730+ functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00013031g0006.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|308; (*GB) gi|224146065|ref|XP_002325867.1| (e_value=5e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=4e-36) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT5G17800.1 (e_value=1e-73) | Symbols: AtMYB56, MYB56 | myb domain protein 56 | chr5:5877247-5879071 FORWARD LENGTH=323;; (*ITAG) Solyc10g081320.1.1 (e_value=2e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61747299-61749497 transcript_region:SL2.40ch10:61747299..61749497+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9C5P9_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00001785g0002.1 protein AED:0.42 eAED:0.43 QI:245|1|0.77|1|0.87|0.77|9|0|380; (*GB) gi|225448968|ref|XP_002269663.1| (e_value=0.0) PREDICTED: probable exocyst complex component 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=0.0) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=0.0) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00001785g0011.1 protein AED:0.42 eAED:0.45 QI:75|0.61|0.57|0.89|0.5|0.63|19|0|618; (*GB) gi|225448968|ref|XP_002269663.1| (e_value=0.0) PREDICTED: probable exocyst complex component 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=0.0) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=0.0) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00050993g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|297745219|emb|CBI40299.3| (e_value=2e-56) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=5e-47) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=4e-48) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g099560.2.1 (e_value=1e-68) genomic_reference:SL2.40ch01 gene_region:81523993-81525045 transcript_region:SL2.40ch01:81523993..81525045- go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00027627g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0.66|1|1|1|6|0|415; (*GB) gi|359494643|ref|XP_002263207.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Vitis vinifera];; (*SWP) sp|Q9SA27|RH36_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1;; (*TAIR) AT1G16280.1 (e_value=0.0) | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | chr1:5568482-5570487 REVERSE LENGTH=491;; (*ITAG) Solyc10g005520.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:426017-431988 transcript_region:SL2.40ch10:426017..431988- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase dbp8 (AHRD V1 ***- B6JZZ3_SCHJY); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00035961g0004.1 protein AED:0.31 eAED:0.31 QI:160|1|0.75|1|0.66|0.5|4|0|166; (*GB) gi|388496768|gb|AFK36450.1| (e_value=7e-89) unknown [Lotus japonicus];; (*SWP) sp|Q3B8G0|CA123_XENLA (e_value=8e-37) UPF0587 protein C1orf123 homolog OS=Xenopus laevis PE=2 SV=1;; (*TAIR) AT4G32930.1 (e_value=5e-77) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15898878-15900185 FORWARD LENGTH=167;; (*ITAG) Solyc11g070050.1.1 (e_value=9e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51686851-51692216 transcript_region:SL2.40ch11:51686851..51692216- functional_description:"DUF866 domain protein (AHRD V1 **-- A1C7N7_ASPCL); contains Interpro domain(s) IPR008584 Protein of unknown function DUF866, eukaryotic "; NbS00050645g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|608; (*GB) gi|225437529|ref|XP_002275599.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264117 [Vitis vinifera];; (*TAIR) AT4G02100.1 (e_value=0.0) | Symbols: | Heat shock protein DnaJ with tetratricopeptide repeat | chr4:930228-932049 FORWARD LENGTH=546;; (*ITAG) Solyc01g079580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71185958-71188543 transcript_region:SL2.40ch01:71185958..71188543+ go_terms:GO:0005488,GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7LGN0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0031072 NbS00024589g0007.1 protein AED:0.08 eAED:0.08 QI:150|0.92|0.85|0.92|0.76|0.85|14|0|709; (*GB) gi|359487344|ref|XP_002263663.2| (e_value=0.0) PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ19|SCC13_ARATH (e_value=5e-101) Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2;; (*TAIR) AT3G59550.1 (e_value=4e-102) | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693;; (*ITAG) Solyc01g086690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73405126-73411225 transcript_region:SL2.40ch01:73405126..73411225- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00024589g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|218; (*GB) gi|350538339|ref|NP_001234082.1| (e_value=8e-111) uncharacterized protein LOC543813 [Solanum lycopersicum];; (*SWP) sp|P32110|GSTX6_SOYBN (e_value=7e-74) Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-72) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc01g086680.2.1 (e_value=4e-115) genomic_reference:SL2.40ch01 gene_region:73403385-73405242 transcript_region:SL2.40ch01:73403385..73405242+ functional_description:"Glutathione S-transferase (AHRD V1 ***- D8UY87_GLYSO); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00010528g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|61; (*ITAG) Solyc12g097040.1.1 (e_value=2e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64041559-64041753 transcript_region:SL2.40ch12:64041559..64041753+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010528g0010.1 protein AED:0.19 eAED:0.19 QI:232|1|1|1|0.8|0.83|6|83|386; (*GB) gi|78059502|gb|ABB18115.1| (e_value=0.0) RPN9 [Nicotiana benthamiana];; (*SWP) sp|Q54NQ0|PSD13_DICDI (e_value=3e-86) 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1;; (*TAIR) AT5G45620.1 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr5:18501590-18503868 FORWARD LENGTH=386;; (*ITAG) Solyc09g090720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65500608-65505951 transcript_region:SL2.40ch09:65500608..65505951- go_terms:GO:0005515 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8IW48_CHLRE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00010528g0007.1 protein AED:0.19 eAED:0.19 QI:213|1|0.92|1|1|0.92|13|0|547; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=0.0) D1 protease precursor [Nicotiana plumbaginifolia];; (*SWP) sp|P42784|CTPA_SYNP2 (e_value=4e-102) Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2;; (*TAIR) AT4G17740.2 (e_value=0.0) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00011722g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.81|1|0.7|0.81|11|0|603; (*GB) gi|147843683|emb|CAN81991.1| (e_value=0.0) hypothetical protein VITISV_040411 [Vitis vinifera];; (*SWP) sp|Q9LT35|NEK6_ARATH (e_value=2e-123) Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=1e-124) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc03g059250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:25551514-25557664 transcript_region:SL2.40ch03:25551514..25557664+ go_terms:GO:0004711 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00011722g0007.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|304 NbS00049441g0005.1 protein AED:0.34 eAED:0.81 QI:0|0|0|1|0|0.33|3|0|95; (*ITAG) Solyc02g076830.1.1 (e_value=6e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36525618-36526928 transcript_region:SL2.40ch02:36525618..36526928- go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein (Fragment) (AHRD V1 **-- Q84V84_CICIN); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00049441g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|0|0.5|2|421|181; (*GB) gi|255563158|ref|XP_002522583.1| (e_value=7e-96) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42610.2 (e_value=1e-83) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc02g076820.2.1 (e_value=1e-112) genomic_reference:SL2.40ch02 gene_region:36519341-36525157 transcript_region:SL2.40ch02:36519341..36525157+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00049441g0004.1 protein AED:0.51 eAED:0.73 QI:0|0|0|0.66|0|0|3|0|91 NbS00017685g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.66|1|0.6|0.66|6|533|276; (*GB) gi|359486932|ref|XP_002267087.2| (e_value=3e-119) PREDICTED: uncharacterized protein LOC100245448 [Vitis vinifera];; (*SWP) sp|Q8LBZ4|OTU_ARATH (e_value=2e-60) OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1;; (*TAIR) AT3G57810.1 (e_value=3e-62) | Symbols: | Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=274;; (*ITAG) Solyc11g007590.1.1 (e_value=7e-156) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1850470-1852640 transcript_region:SL2.40ch11:1850470..1852640+ functional_description:"OTU domain-containing protein 4 (AHRD V1 *-*- OTUD4_HUMAN); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00017685g0004.1 protein AED:0.17 eAED:0.19 QI:328|0.75|0.88|1|0.75|0.66|9|0|450; (*GB) gi|224109926|ref|XP_002315357.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc11g007600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1854302-1857613 transcript_region:SL2.40ch11:1854302..1857613- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-* A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00039215g0008.1 protein AED:0.03 eAED:0.03 QI:501|1|1|1|1|1|5|113|426; (*GB) gi|224104719|ref|XP_002313540.1| (e_value=1e-125) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28150.1 (e_value=5e-96) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc06g030470.2.1 (e_value=1e-154) genomic_reference:SL2.40ch06 gene_region:15436256-15438408 transcript_region:SL2.40ch06:15436256..15438408- functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00039215g0007.1 protein AED:0.05 eAED:0.07 QI:0|0.66|0|1|1|1|4|0|328; (*GB) gi|56694213|gb|AAW22875.1| (e_value=2e-116) bHLH transcriptional regulator [Solanum lycopersicum];; (*SWP) sp|Q0V7X4|FIT_ARATH (e_value=2e-71) Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1;; (*TAIR) AT2G28160.1 (e_value=1e-72) | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ATFIT1 | FER-like regulator of iron uptake | chr2:12004713-12005908 FORWARD LENGTH=318;; (*ITAG) Solyc06g051550.2.1 (e_value=4e-119) genomic_reference:SL2.40ch06 gene_region:31547113-31549026 transcript_region:SL2.40ch06:31547113..31549026- go_terms:GO:0003700,GO:0042802 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00039215g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|588; (*GB) gi|359479437|ref|XP_003632273.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244770 [Vitis vinifera];; (*TAIR) AT2G28120.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:11985934-11987667 FORWARD LENGTH=577;; (*ITAG) Solyc06g011590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:8257906-8259558 transcript_region:SL2.40ch06:8257906..8259558- functional_description:"Nodulin family protein (AHRD V1 ***- D7LIF1_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00039215g0103.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|173 NbS00039215g0107.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.57|1|0.5|0.42|7|1256|245 NbS00054888g0005.1 protein AED:0.08 eAED:0.11 QI:250|0.80|0.72|0.95|0.90|0.81|22|633|1836; (*GB) gi|225449724|ref|XP_002267310.1| (e_value=0.0) PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=2e-96) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=5e-98) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc11g007580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1814235-1823255 transcript_region:SL2.40ch11:1814235..1823255- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00030508g0002.1 protein AED:0.16 eAED:0.24 QI:0|0|0|1|0|0|4|0|227; (*ITAG) Solyc01g111480.1.1 (e_value=9e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00025674g0004.1 protein AED:0.08 eAED:0.32 QI:86|1|0|1|0|0|2|0|92; (*GB) gi|29825615|gb|AAO92305.1| (e_value=3e-44) ent-kaurene synthase [Nicotiana sylvestris];; (*SWP) sp|C1K5M3|PHS1_SOLLC (e_value=2e-29) Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic OS=Solanum lycopersicum GN=PHS1 PE=1 SV=1;; (*TAIR) AT1G79460.1 (e_value=2e-15) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785;; (*ITAG) Solyc08g005720.2.1 (e_value=8e-27) genomic_reference:SL2.40ch08 gene_region:578243-586720 transcript_region:SL2.40ch08:578243..586720+ go_terms:GO:0009899 functional_description:"Ent-kaurene synthase-like protein 1 (AHRD V1 **** Q673F9_HORVD); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0009899 NbS00023626g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|75 NbS00023626g0006.1 protein AED:0.34 eAED:0.44 QI:27|0|0|1|0|0|2|0|51 NbS00000546g0010.1 protein AED:0.25 eAED:0.27 QI:0|1|0.66|1|1|1|3|0|238; (*GB) gi|225435070|ref|XP_002284400.1| (e_value=6e-71) PREDICTED: transcription factor MYB59-like [Vitis vinifera];; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=2e-67) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G46130.1 (e_value=2e-68) | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain protein 48 | chr3:16945433-16946376 FORWARD LENGTH=256;; (*ITAG) Solyc11g073120.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53297151-53298385 transcript_region:SL2.40ch11:53297151..53298385+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00000546g0009.1 protein AED:0.09 eAED:0.09 QI:819|1|0.66|1|1|1|3|0|349; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=4e-165) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=5e-85) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=7e-168) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00000546g0001.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=4e-36) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=4e-14) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=7e-39) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00026522g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|0.57|1|0.66|0.85|7|0|563; (*GB) gi|348659059|gb|AEP82767.1| (e_value=0.0) linalool/nerolidol synthase [Solanum lycopersicum];; (*SWP) sp|P0CV96|NES1_FRAVE (e_value=3e-177) (3S,6E)-nerolidol synthase 1, chloroplastic OS=Fragaria vesca PE=1 SV=1;; (*TAIR) AT1G61680.1 (e_value=3e-134) | Symbols: TPS14, ATTPS14 | terpene synthase 14 | chr1:22772455-22774687 REVERSE LENGTH=569;; (*ITAG) Solyc10g005390.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:291598-294853 transcript_region:SL2.40ch10:291598..294853+ go_terms:GO:0034007 functional_description:"Linalool synthase (AHRD V1 **** D4N3A0_9ERIC); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034007 NbS00028628g0001.1 protein AED:0.11 eAED:0.11 QI:221|0|0.5|1|0|0.5|2|0|362; (*GB) gi|325463083|gb|ADZ15315.1| (e_value=2e-138) DREB2 [Solanum lycopersicum];; (*SWP) sp|O82132|DRE2A_ARATH (e_value=2e-42) Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1;; (*TAIR) AT5G05410.1 (e_value=2e-43) | Symbols: DREB2A, DREB2 | DRE-binding protein 2A | chr5:1602650-1603657 FORWARD LENGTH=335;; (*ITAG) Solyc05g052410.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61781895-61783094 transcript_region:SL2.40ch05:61781895..61783094+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00052321g0006.1 protein AED:0.21 eAED:0.21 QI:130|0.33|0.25|1|1|1|4|0|214; (*GB) gi|170388|gb|AAA34140.1| (e_value=6e-135) chlorophyll a/b-binding protein [Solanum lycopersicum];; (*SWP) sp|P12360|CB11_SOLLC (e_value=9e-132) Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1;; (*TAIR) AT3G54890.1 (e_value=3e-116) | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241;; (*ITAG) Solyc05g056070.2.1 (e_value=1e-137) genomic_reference:SL2.40ch05 gene_region:64606977-64608378 transcript_region:SL2.40ch05:64606977..64608378+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 ***- CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00003926g0016.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.77|1|1|1|9|0|503; (*GB) gi|224108906|ref|XP_002315010.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L608|HPSE2_ARATH (e_value=0.0) Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1;; (*TAIR) AT5G61250.1 (e_value=0.0) | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632294-24634597 REVERSE LENGTH=539;; (*ITAG) Solyc05g012540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5781470-5784350 transcript_region:SL2.40ch05:5781470..5784350+ go_terms:GO:0004566 functional_description:"Heparanase (AHRD V1 ***- C5IFK6_ORYSI); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0004566 NbS00003926g0017.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.83|0.2|0.16|6|0|192; (*GB) gi|356497957|ref|XP_003517822.1| (e_value=4e-19) PREDICTED: uncharacterized protein LOC100802857 [Glycine max];; (*TAIR) AT1G13920.1 (e_value=1e-14) | Symbols: | Remorin family protein | chr1:4758188-4759754 FORWARD LENGTH=345;; (*ITAG) Solyc05g012550.2.1 (e_value=4e-37) genomic_reference:SL2.40ch05 gene_region:5785174-5787462 transcript_region:SL2.40ch05:5785174..5787462+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00003926g0015.1 protein AED:0.15 eAED:0.15 QI:0|1|0.6|1|1|0.8|5|0|268; (*GB) gi|356497961|ref|XP_003517824.1| (e_value=4e-85) PREDICTED: putative SNAP25 homologous protein SNAP30-like [Glycine max];; (*SWP) sp|Q9LMG8|SNP30_ARATH (e_value=9e-85) Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1;; (*TAIR) AT1G13890.1 (e_value=7e-86) | Symbols: SNAP30, ATSNAP30 | soluble N-ethylmaleimide-sensitive factor adaptor protein 30 | chr1:4751581-4752844 FORWARD LENGTH=263;; (*ITAG) Solyc05g012520.2.1 (e_value=3e-137) genomic_reference:SL2.40ch05 gene_region:5769322-5771346 transcript_region:SL2.40ch05:5769322..5771346+ go_terms:GO:0005484 functional_description:"Synaptosomal-associated protein 30 (AHRD V1 ***- D7KQK9_ARALY); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00003926g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|357496653|ref|XP_003618615.1| (e_value=4e-81) CCP [Medicago truncatula];; (*TAIR) AT1G69330.1 (e_value=3e-75) | Symbols: | RING/U-box superfamily protein | chr1:26064138-26064950 REVERSE LENGTH=270;; (*ITAG) Solyc05g012560.1.1 (e_value=3e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:5787614-5788408 transcript_region:SL2.40ch05:5787614..5788408- go_terms:GO:0004842 functional_description:"RING zinc finger protein-like (AHRD V1 **-- Q9LHJ7_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00004302g0015.1 protein AED:0.02 eAED:0.02 QI:71|0.5|1|1|1|1|3|68|787; (*GB) gi|225424043|ref|XP_002279580.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Vitis vinifera];; (*SWP) sp|Q9M9C5|Y1680_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1;; (*TAIR) AT1G68400.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr1:25646401-25648916 REVERSE LENGTH=670;; (*ITAG) Solyc05g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3238520-3242391 transcript_region:SL2.40ch05:3238520..3242391+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00004302g0012.1 protein AED:0.21 eAED:0.28 QI:39|0.66|0.25|1|0.66|0.5|4|0|156; (*GB) gi|255572122|ref|XP_002527001.1| (e_value=6e-65) altered response to gravity (arg1), plant, putative [Ricinus communis];; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=6e-55) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=4e-56) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc04g007370.2.1 (e_value=1e-62) genomic_reference:SL2.40ch04 gene_region:1065839-1072643 transcript_region:SL2.40ch04:1065839..1072643- go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00004302g0019.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|0.5|2|0|401; (*GB) gi|225424039|ref|XP_002279551.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250702 [Vitis vinifera];; (*TAIR) AT1G10880.1 (e_value=4e-135) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3624035-3627021 REVERSE LENGTH=651;; (*ITAG) Solyc05g009130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3251899-3254638 transcript_region:SL2.40ch05:3251899..3254638- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00004302g0013.1 protein AED:0.10 eAED:0.10 QI:63|1|1|1|0|0|2|278|402; (*GB) gi|224111638|ref|XP_002315928.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G68390.1 (e_value=2e-153) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408;; (*ITAG) Solyc05g009120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3244625-3248053 transcript_region:SL2.40ch05:3244625..3248053- go_terms:GO:0005515 functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00004302g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|214; (*GB) gi|225424029|ref|XP_002283623.1| (e_value=5e-90) PREDICTED: zinc finger protein 6 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=1e-33) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT1G68360.1 (e_value=1e-53) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g009180.1.1 (e_value=8e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3315685-3316332 transcript_region:SL2.40ch05:3315685..3316332- go_terms:GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 ***- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00004302g0003.1 protein AED:0.32 eAED:0.32 QI:172|0.57|0.6|0.93|0.92|0.86|15|798|619; (*GB) gi|225424037|ref|XP_002282946.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100247470 [Vitis vinifera];; (*TAIR) AT1G25375.1 (e_value=8e-65) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:8900279-8903220 REVERSE LENGTH=524;; (*ITAG) Solyc05g009140.2.1 (e_value=1e-100) genomic_reference:SL2.40ch05 gene_region:3254932-3264160 transcript_region:SL2.40ch05:3254932..3264160- go_terms:GO:0016787 functional_description:"Beta-lactamase domain protein (AHRD V1 *-*- D2RPF9_HALTV); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0016787 NbS00049218g0001.1 protein AED:0.06 eAED:0.06 QI:145|0|0.33|1|1|1|3|0|614; (*GB) gi|225433302|ref|XP_002282386.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 [Vitis vinifera];; (*SWP) sp|Q9T0G7|SUVH9_ARATH (e_value=0.0) Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1;; (*TAIR) AT4G13460.2 (e_value=0.0) | Symbols: SDG22, SUVH9, SET22 | SU(VAR)3-9 homolog 9 | chr4:7824653-7826605 REVERSE LENGTH=650;; (*ITAG) Solyc12g096990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64019156-64021377 transcript_region:SL2.40ch12:64019156..64021377- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00002994g0008.1 protein AED:0.27 eAED:0.36 QI:0|0|0|1|0|0.33|3|0|384; (*GB) gi|16933569|gb|AAL30109.1| (e_value=1e-20) unknown [Solanum phureja x Solanum stenotomum];; (*ITAG) Solyc07g054360.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60036576-60037004 transcript_region:SL2.40ch07:60036576..60037004- functional_description:"Unknown Protein (AHRD V1)"; NbS00002994g0009.1 protein AED:0.15 eAED:0.17 QI:5|0|0|0.66|0|0|3|0|127; (*GB) gi|147798970|emb|CAN77114.1| (e_value=1e-24) hypothetical protein VITISV_042191 [Vitis vinifera];; (*SWP) sp|A2SY66|VICHY_VICSN (e_value=2e-18) Vicianin hydrolase (Fragment) OS=Vicia sativa subsp. nigra PE=1 SV=1;; (*TAIR) AT2G25630.1 (e_value=5e-17) | Symbols: BGLU14 | beta glucosidase 14 | chr2:10908360-10909880 FORWARD LENGTH=489;; (*ITAG) Solyc01g074060.1.1 (e_value=3e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70625719-70626668 transcript_region:SL2.40ch01:70625719..70626668+ go_terms:GO:0005975 functional_description:"Beta-glucosidase 01 (AHRD V1 ***- B5M9E4_SOLLC); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00009928g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|76884939|gb|ABA59556.1| (e_value=0.0) U-box protein [Capsicum annuum];; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=1e-159) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=8e-161) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1567768-1569141 transcript_region:SL2.40ch01:1567768..1569141+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00009928g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|364; (*GB) gi|255566135|ref|XP_002524055.1| (e_value=8e-137) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=1e-87) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=2e-88) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc01g007050.1.1 (e_value=1e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1591040-1592454 transcript_region:SL2.40ch01:1591040..1592454- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00006634g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|93 NbS00028937g0005.1 protein AED:0.17 eAED:0.17 QI:256|0.75|1|1|1|1|5|596|200; (*GB) gi|225441601|ref|XP_002281697.1| (e_value=1e-113) PREDICTED: eukaryotic translation initiation factor 4E type 3 [Vitis vinifera];; (*SWP) sp|Q9FK59|IF4E3_ARATH (e_value=7e-90) Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1;; (*TAIR) AT5G18110.1 (e_value=5e-91) | Symbols: NCBP | novel cap-binding protein | chr5:5989105-5990588 REVERSE LENGTH=221;; (*ITAG) Solyc10g080660.1.1 (e_value=5e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61208446-61211985 transcript_region:SL2.40ch10:61208446..61211985- go_terms:GO:0005737 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- A6XJR1_PIG); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0005737 NbS00028937g0008.1 protein AED:0.25 eAED:0.29 QI:115|0.6|0.83|1|1|1|6|512|139; (*GB) gi|388507022|gb|AFK41577.1| (e_value=6e-57) unknown [Lotus japonicus];; (*SWP) sp|O49044|SODC2_MESCR (e_value=3e-55) Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1;; (*TAIR) AT5G18100.1 (e_value=3e-50) | Symbols: CSD3 | copper/zinc superoxide dismutase 3 | chr5:5987221-5988706 FORWARD LENGTH=164;; (*ITAG) Solyc03g062890.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:29784639-29789346 transcript_region:SL2.40ch03:29784639..29789346- go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** B6ZBR0_POPTN); contains Interpro domain(s) IPR001424 Superoxide dismutase, copper/zinc binding "; GO:0004784 NbS00013798g0005.1 protein AED:0.14 eAED:0.14 QI:8|1|1|1|0.71|0.62|8|1482|381; (*GB) gi|350534908|ref|NP_001233910.1| (e_value=0.0) beta-D-xylosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9FLG1|BXL4_ARATH (e_value=0.0) Beta-D-xylosidase 4 OS=Arabidopsis thaliana GN=BXL4 PE=1 SV=1;; (*TAIR) AT5G64570.1 (e_value=0.0) | Symbols: XYL4, ATBXL4 | beta-D-xylosidase 4 | chr5:25810227-25813309 REVERSE LENGTH=784;; (*ITAG) Solyc10g047030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34703285-34707424 transcript_region:SL2.40ch10:34703285..34707424+ go_terms:GO:0009044,GO:0005515 functional_description:"Beta-xylosidase 4 (AHRD V1 **** D7MRV5_ARALY); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0005515 NbS00013798g0002.1 protein AED:0.18 eAED:0.18 QI:90|1|1|1|0.5|0.4|5|576|337; (*GB) gi|147795077|emb|CAN60857.1| (e_value=2e-23) hypothetical protein VITISV_026075 [Vitis vinifera];; (*ITAG) Solyc10g047040.1.1 (e_value=4e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:34709751-34711043 transcript_region:SL2.40ch10:34709751..34711043+ go_terms:GO:0008270 functional_description:"Zinc finger protein zfs1 (AHRD V1 *-*- ZFS1_SCHPO); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00013798g0018.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0.5|2|0|68; (*GB) gi|55977763|sp|P00823.2|ATPA_TOBAC (e_value=7e-32) RecName: Full=ATP synthase subunit alpha, chloroplastic; AltName: Full=ATP synthase F1 sector subunit alpha; AltName: Full=F-ATPase subunit alpha;; (*SWP) sp|P00823|ATPA_TOBAC (e_value=2e-33) ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2;; (*ITAG) ATCG00120.1 (e_value=1e-31) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc04g071300.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55829174-55829593 transcript_region:SL2.40ch04:55829174..55829593+ go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha chloroplastic (AHRD V1 ***- D4PB96_PHODC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00013456g0018.1 protein AED:0.10 eAED:0.10 QI:0|0.72|0.75|0.91|0.72|0.75|12|526|651; (*GB) gi|255543715|ref|XP_002512920.1| (e_value=0.0) ribosomal RNA methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q6FX63|SPB1_CANGA (e_value=2e-52) AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SPB1 PE=3 SV=1;; (*TAIR) AT4G25730.1 (e_value=3e-161) | Symbols: | FtsJ-like methyltransferase family protein | chr4:13102906-13106718 REVERSE LENGTH=821;; (*ITAG) Solyc10g046930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:33595153-33600867 transcript_region:SL2.40ch10:33595153..33600867- go_terms:GO:0031167,GO:0005634,GO:0032259 functional_description:"Ribosomal RNA large subunit methyltransferase J family protein (AHRD V1 *-*- A7APJ4_BABBO); contains Interpro domain(s) IPR015507 Ribosomal RNA methyltransferase J "; GO:0031167,GO:0005634,GO:0032259 NbS00013456g0025.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0|1|0.5|0.66|3|0|167; (*GB) gi|225423491|ref|XP_002269100.1| (e_value=9e-101) PREDICTED: 14-3-3-like protein GF14 iota-like [Vitis vinifera];; (*SWP) sp|Q9C5W6|14312_ARATH (e_value=3e-97) 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1;; (*TAIR) AT1G26480.1 (e_value=3e-98) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc05g012420.2.1 (e_value=1e-108) genomic_reference:SL2.40ch05 gene_region:5666263-5669472 transcript_region:SL2.40ch05:5666263..5669472- go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00013456g0017.1 protein AED:0.22 eAED:0.26 QI:0|0.6|0.33|1|0.6|0.5|6|0|662; (*GB) gi|359472802|ref|XP_002271275.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT5-like [Vitis vinifera];; (*SWP) sp|Q8GYW9|PMT4_ARATH (e_value=0.0) Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2;; (*TAIR) AT1G13860.3 (e_value=0.0) | Symbols: QUL1 | QUASIMODO2 LIKE 1 | chr1:4743754-4746256 REVERSE LENGTH=603;; (*ITAG) Solyc05g012450.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5691059-5696583 transcript_region:SL2.40ch05:5691059..5696583- go_terms:GO:0016020 functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00013456g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|132 NbS00013456g0005.1 protein AED:0.22 eAED:0.25 QI:0|0.5|0.28|1|1|1|7|0|708; (*GB) gi|359472534|ref|XP_002274321.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FZD1|PPR58_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1 SV=1;; (*TAIR) AT1G26460.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9151816-9154407 FORWARD LENGTH=630;; (*ITAG) Solyc05g012390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5649249-5653665 transcript_region:SL2.40ch05:5649249..5653665+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KQQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013456g0026.1 protein AED:0.59 eAED:0.71 QI:0|0|0|0.75|1|0.75|4|0|85; (*GB) gi|224101441|ref|XP_002312281.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G26470.1 (e_value=1e-33) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133;; (*ITAG) Solyc05g012400.2.1 (e_value=6e-43) genomic_reference:SL2.40ch05 gene_region:5654506-5656999 transcript_region:SL2.40ch05:5654506..5656999+ go_terms:GO:0043189 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012423 CT20 "; GO:0043189 NbS00057909g0004.1 protein AED:0.04 eAED:0.06 QI:105|0|0.33|1|0.5|0.33|3|0|173; (*GB) gi|224128496|ref|XP_002329018.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=1e-41) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G72970.2 (e_value=6e-43) | Symbols: HTH, EDA17 | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27452872-27455706 FORWARD LENGTH=567;; (*ITAG) Solyc06g062600.2.1 (e_value=8e-56) genomic_reference:SL2.40ch06 gene_region:35912143-35916844 transcript_region:SL2.40ch06:35912143..35916844+ go_terms:GO:0046593 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0046593 NbS00016839g0022.1 protein AED:0.09 eAED:0.12 QI:13|0|0.2|1|0|0|5|0|633; (*GB) gi|359492768|ref|XP_002279149.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g43980, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LP03|PPR73_ARATH (e_value=4e-138) Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E58 PE=2 SV=1;; (*TAIR) AT1G43980.1 (e_value=1e-137) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:16687637-16689502 REVERSE LENGTH=621;; (*ITAG) Solyc04g063340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54565840-54567843 transcript_region:SL2.40ch04:54565840..54567843+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00016839g0021.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|288; (*GB) gi|357521321|ref|XP_003630949.1| (e_value=2e-152) 40S ribosomal protein S2 [Medicago truncatula];; (*SWP) sp|Q8L8Y0|RS21_ARATH (e_value=2e-148) 40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2;; (*TAIR) AT1G58380.1 (e_value=1e-149) | Symbols: XW6 | Ribosomal protein S5 family protein | chr1:21689115-21690085 FORWARD LENGTH=284;; (*ITAG) Solyc04g074300.2.1 (e_value=4e-167) genomic_reference:SL2.40ch04 gene_region:57894185-57896333 transcript_region:SL2.40ch04:57894185..57896333+ go_terms:GO:0003735 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- C5K1T7_AJEDS); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal "; GO:0003735 NbS00016839g0002.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|1|1|3|0|289; (*GB) gi|357521321|ref|XP_003630949.1| (e_value=3e-149) 40S ribosomal protein S2 [Medicago truncatula];; (*SWP) sp|Q93VB8|RS22_ARATH (e_value=4e-145) 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1;; (*TAIR) AT1G58684.1 (e_value=3e-146) | Symbols: | Ribosomal protein S5 family protein | chr1:21770021-21771217 REVERSE LENGTH=284;; (*ITAG) Solyc04g074300.2.1 (e_value=5e-166) genomic_reference:SL2.40ch04 gene_region:57894185-57896333 transcript_region:SL2.40ch04:57894185..57896333+ go_terms:GO:0003735 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- C5K1T7_AJEDS); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal "; GO:0003735 NbS00016839g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|0|0|2|1343|258; (*GB) gi|225457865|ref|XP_002279206.1| (e_value=3e-121) PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Vitis vinifera];; (*SWP) sp|Q9LRV2|PP256_ARATH (e_value=1e-90) Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1;; (*TAIR) AT3G26540.1 (e_value=8e-92) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9744542-9746644 REVERSE LENGTH=700;; (*ITAG) Solyc04g063300.1.1 (e_value=3e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54545986-54548082 transcript_region:SL2.40ch04:54545986..54548082+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LR64_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016839g0019.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.5|1|1|1|4|543|272; (*GB) gi|297745190|emb|CBI39182.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G58210.1 (e_value=1e-23) | Symbols: EMB1674 | kinase interacting family protein | chr1:21553621-21558056 FORWARD LENGTH=1246;; (*ITAG) Solyc04g015710.2.1 (e_value=8e-121) genomic_reference:SL2.40ch04 gene_region:6008927-6013085 transcript_region:SL2.40ch04:6008927..6013085- functional_description:"Os01g0530300 protein (Fragment) (AHRD V1 *-*- Q0JM77_ORYSJ); contains Interpro domain(s) IPR015216 SANT associated "; NbS00016839g0001.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|438; (*GB) gi|225457865|ref|XP_002279206.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Vitis vinifera];; (*SWP) sp|Q9LRV2|PP256_ARATH (e_value=2e-149) Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1;; (*TAIR) AT3G26540.1 (e_value=1e-150) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9744542-9746644 REVERSE LENGTH=700;; (*ITAG) Solyc04g063300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54545986-54548082 transcript_region:SL2.40ch04:54545986..54548082+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LR64_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016839g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|366; (*GB) gi|225438361|ref|XP_002273988.1| (e_value=0.0) PREDICTED: aspartic proteinase Asp1 [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=7e-94) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT4G33490.2 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:16108781-16110679 REVERSE LENGTH=425;; (*ITAG) Solyc06g018100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:13419008-13422267 transcript_region:SL2.40ch06:13419008..13422267- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00025348g0006.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0|0.75|0|0.25|4|0|309; (*GB) gi|358248424|ref|NP_001240135.1| (e_value=2e-109) uncharacterized protein LOC100818781 [Glycine max];; (*SWP) sp|Q7F8R0|C3H14_ORYSJ (e_value=1e-86) Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=1e-49) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc01g014850.2.1 (e_value=2e-138) genomic_reference:SL2.40ch01 gene_region:15586445-15597388 transcript_region:SL2.40ch01:15586445..15597388- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003700 NbS00025348g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|255574418|ref|XP_002528122.1| (e_value=5e-100) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G19900.1 (e_value=3e-100) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g015020.2.1 (e_value=9e-154) genomic_reference:SL2.40ch01 gene_region:16607107-16609448 transcript_region:SL2.40ch01:16607107..16609448+ functional_description:"PRLI-interacting factor A (Fragment) (AHRD V1 *-*- Q9FUB4_ARATH)"; NbS00042718g0003.1 protein AED:0.38 eAED:0.38 QI:0|1|0.8|1|1|1|5|0|239; (*GB) gi|359485291|ref|XP_002280878.2| (e_value=6e-127) PREDICTED: 2-aminoethanethiol dioxygenase [Vitis vinifera];; (*SWP) sp|Q96SZ5|AEDO_HUMAN (e_value=6e-22) 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2;; (*TAIR) AT2G42670.2 (e_value=2e-119) | Symbols: | Protein of unknown function (DUF1637) | chr2:17772004-17773700 REVERSE LENGTH=242;; (*ITAG) Solyc10g007990.2.1 (e_value=6e-165) genomic_reference:SL2.40ch10 gene_region:2144877-2151960 transcript_region:SL2.40ch10:2144877..2151960+ go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B6T568_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00004574g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc01g088120.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:74749418-74749732 transcript_region:SL2.40ch01:74749418..74749732+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000514g0007.1 protein AED:0.02 eAED:0.02 QI:106|1|1|1|1|1|4|152|328; (*GB) gi|211906542|gb|ACJ11764.1| (e_value=7e-151) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZE7|PER51_ARATH (e_value=2e-138) Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1;; (*TAIR) AT4G37530.1 (e_value=2e-139) | Symbols: | Peroxidase superfamily protein | chr4:17634786-17636082 FORWARD LENGTH=329;; (*ITAG) Solyc08g069040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55334671-55336365 transcript_region:SL2.40ch08:55334671..55336365+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** Q84UA9_ARTAN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00000514g0003.1 protein AED:0.09 eAED:0.09 QI:1267|0.83|0.84|1|0.91|0.84|13|719|506; (*GB) gi|356509862|ref|XP_003523663.1| (e_value=1e-99) PREDICTED: ubiquitin carboxyl-terminal hydrolase 19-like [Glycine max];; (*SWP) sp|Q9SJA1|UBP19_ARATH (e_value=9e-92) Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2;; (*TAIR) AT2G24640.2 (e_value=4e-95) | Symbols: UBP19 | ubiquitin-specific protease 19 | chr2:10475613-10478388 REVERSE LENGTH=502;; (*ITAG) Solyc08g069050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55337003-55346093 transcript_region:SL2.40ch08:55337003..55346093- go_terms:GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7LIB1_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004197 NbS00000514g0115.1 protein AED:0.10 eAED:0.10 QI:8|0.90|0.91|1|0.72|0.66|12|211|424 NbS00000514g0116.1 protein AED:0.27 eAED:0.29 QI:313|0.66|0.5|0.9|0.77|0.8|10|0|412 NbS00000514g0107.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.25|1|1|4|260|75 NbS00000514g0114.1 protein AED:0.50 eAED:0.66 QI:0|1|0|1|0|0.5|2|0|89 NbS00012165g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|297840375|ref|XP_002888069.1| (e_value=2e-84) OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G61790.1 (e_value=8e-87) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc02g080180.1.1 (e_value=3e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39052203-39053231 transcript_region:SL2.40ch02:39052203..39053231+ go_terms:GO:0015157 functional_description:"Oligosaccharide transporter (AHRD V1 **-* B4FSV8_MAIZE); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00012165g0009.1 protein AED:0.78 eAED:0.89 QI:0|0|0|0.5|1|1|4|0|99 NbS00012165g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|1|1|2|136|535; (*GB) gi|255554971|ref|XP_002518523.1| (e_value=0.0) Pectinesterase precursor, putative [Ricinus communis];; (*SWP) sp|Q1JPL7|PME18_ARATH (e_value=0.0) Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3;; (*TAIR) AT1G11580.1 (e_value=0.0) | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557;; (*ITAG) Solyc02g080220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39074733-39077300 transcript_region:SL2.40ch02:39074733..39077300+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RXQ4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00012165g0010.1 protein AED:0.06 eAED:0.06 QI:94|1|1|1|1|1|4|171|299; (*GB) gi|359807291|ref|NP_001241628.1| (e_value=6e-160) uncharacterized protein LOC100790013 precursor [Glycine max];; (*SWP) sp|Q8L9A9|XTH8_ARATH (e_value=4e-150) Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2;; (*TAIR) AT1G11545.1 (e_value=3e-151) | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase 8 | chr1:3878689-3880286 REVERSE LENGTH=305;; (*ITAG) Solyc02g080160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39038428-39040336 transcript_region:SL2.40ch02:39038428..39040336- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** C0IRG0_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00012165g0016.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|567; (*GB) gi|225444375|ref|XP_002264956.1| (e_value=4e-170) PREDICTED: pentatricopeptide repeat-containing protein At4g21170-like [Vitis vinifera];; (*SWP) sp|O49558|PP331_ARATH (e_value=8e-93) Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=2 SV=2;; (*TAIR) AT4G21170.1 (e_value=8e-74) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11286756-11288513 REVERSE LENGTH=551;; (*ITAG) Solyc02g080170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39049493-39051247 transcript_region:SL2.40ch02:39049493..39051247+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041547g0012.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.75|0.33|0.25|4|0|331; (*GB) gi|225457050|ref|XP_002279713.1| (e_value=1e-78) PREDICTED: CASP-like protein At2g36330 [Vitis vinifera];; (*SWP) sp|Q84WP5|CSPL8_ARATH (e_value=5e-63) CASP-like protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1;; (*TAIR) AT2G36330.1 (e_value=4e-64) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283;; (*ITAG) Solyc03g114290.2.1 (e_value=9e-110) genomic_reference:SL2.40ch03 gene_region:58358468-58361072 transcript_region:SL2.40ch03:58358468..58361072+ functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00041547g0011.1 protein AED:0.10 eAED:0.10 QI:137|0.5|0.71|1|0.33|0.57|7|316|356; (*GB) gi|224081375|ref|XP_002306388.1| (e_value=1e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W404|PGT2_LITER (e_value=7e-70) 4-hydroxybenzoate geranyltransferase 2 OS=Lithospermum erythrorhizon GN=PGT-2 PE=1 SV=1;; (*TAIR) AT4G23660.2 (e_value=4e-68) | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | chr4:12328086-12331359 REVERSE LENGTH=407;; (*ITAG) Solyc03g114300.2.1 (e_value=6e-125) genomic_reference:SL2.40ch03 gene_region:58362391-58366660 transcript_region:SL2.40ch03:58362391..58366660+ go_terms:GO:0008412 functional_description:"4-hydroxybenzoate octaprenyltransferase (AHRD V1 **** Q2RWW9_RHORT); contains Interpro domain(s) IPR006370 4-hydroxybenzoate polyprenyl transferase "; GO:0008412 NbS00041547g0010.1 protein AED:0.21 eAED:0.21 QI:277|1|1|1|0.77|0.8|10|306|399; (*GB) gi|255540693|ref|XP_002511411.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GYT9|SIS3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2;; (*TAIR) AT3G47990.1 (e_value=0.0) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358;; (*ITAG) Solyc03g114280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58350870-58356906 transcript_region:SL2.40ch03:58350870..58356906+ go_terms:GO:0004842 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00018123g0010.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|987; (*GB) gi|359494335|ref|XP_002267870.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Vitis vinifera];; (*SWP) sp|C0LGR3|Y4265_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1;; (*TAIR) AT4G26540.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:13394673-13398028 REVERSE LENGTH=1091;; (*ITAG) Solyc07g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64680947-64684651 transcript_region:SL2.40ch07:64680947..64684651+ go_terms:GO:0004674,GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0004674,GO:0001653 NbS00018123g0015.1 protein AED:0.00 eAED:0.00 QI:0|0.8|0.66|1|0.8|0.66|6|653|364; (*GB) gi|359494337|ref|XP_002267915.2| (e_value=1e-64) PREDICTED: regulatory protein recX-like [Vitis vinifera];; (*TAIR) AT3G13226.1 (e_value=6e-47) | Symbols: | regulatory protein RecX family protein | chr3:4264442-4266286 REVERSE LENGTH=382;; (*ITAG) Solyc07g065870.2.1 (e_value=3e-140) genomic_reference:SL2.40ch07 gene_region:64685507-64689022 transcript_region:SL2.40ch07:64685507..64689022- go_terms:GO:0006282 functional_description:"Regulatory protein RecX (AHRD V1 *-*- B6TKG2_MAIZE); contains Interpro domain(s) IPR003783 Regulatory protein RecX "; GO:0006282 NbS00018123g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.77|0.57|0.94|0.77|0.84|19|231|1241; (*GB) gi|224122336|ref|XP_002330598.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT3G44730.1 (e_value=0.0) | Symbols: ATKP1, KP1 | kinesin-like protein 1 | chr3:16285888-16290852 FORWARD LENGTH=1087;; (*ITAG) Solyc07g065880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64689631-64698266 transcript_region:SL2.40ch07:64689631..64698266- go_terms:GO:0005576,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005576,GO:0007018 NbS00011064g0001.1 protein AED:0.12 eAED:0.12 QI:647|1|1|1|1|1|3|128|331; (*GB) gi|119507465|dbj|BAF42040.1| (e_value=3e-84) pectin methylesterase 3 [Pyrus communis];; (*SWP) sp|O81415|PME39_ARATH (e_value=2e-83) Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1;; (*TAIR) AT4G02300.1 (e_value=2e-84) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1009366-1013034 REVERSE LENGTH=532;; (*ITAG) Solyc00g170510.1.1 (e_value=4e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:18012465-18013434 transcript_region:SL2.40ch00:18012465..18013434- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00020174g0003.1 protein AED:0.22 eAED:0.22 QI:270|1|0.9|1|0.77|0.8|10|502|458; (*GB) gi|365222924|gb|AEW69814.1| (e_value=0.0) Hop-interacting protein THI115 [Solanum lycopersicum];; (*TAIR) AT5G13020.1 (e_value=3e-145) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc01g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70554643-70560979 transcript_region:SL2.40ch01:70554643..70560979- functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00013904g0005.1 protein AED:0.02 eAED:0.06 QI:0|1|0|1|0|1|2|0|344; (*GB) gi|225460057|ref|XP_002274203.1| (e_value=3e-58) PREDICTED: uncharacterized protein LOC100241424 [Vitis vinifera];; (*TAIR) AT4G10080.1 (e_value=1e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:6300454-6302560 REVERSE LENGTH=325;; (*ITAG) Solyc07g063050.1.1 (e_value=3e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62863155-62863988 transcript_region:SL2.40ch07:62863155..62863988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001361g0009.1 protein AED:0.25 eAED:0.25 QI:310|1|1|1|0.9|0.90|11|364|362; (*GB) gi|356531866|ref|XP_003534497.1| (e_value=0.0) PREDICTED: phosphoglycolate phosphatase-like [Glycine max];; (*SWP) sp|Q2T9S4|PGP_BOVIN (e_value=1e-54) Phosphoglycolate phosphatase OS=Bos taurus GN=PGP PE=2 SV=1;; (*TAIR) AT5G36700.4 (e_value=4e-174) | Symbols: PGLP1 | 2-phosphoglycolate phosphatase 1 | chr5:14421929-14424430 REVERSE LENGTH=362;; (*ITAG) Solyc11g008620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2807207-2813709 transcript_region:SL2.40ch11:2807207..2813709- go_terms:GO:0008152 functional_description:"Phosphoglycolate phosphatase (AHRD V1 **-- C1FHY2_9CHLO); contains Interpro domain(s) IPR006349 2-phosphoglycolate phosphatase, eukaryotic "; GO:0008152 NbS00001361g0010.1 protein AED:0.30 eAED:0.30 QI:155|0.83|0.85|1|0.66|0.85|7|0|223; (*GB) gi|359478080|ref|XP_003632066.1| (e_value=8e-130) PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera];; (*SWP) sp|Q9C5H6|CSTR3_ARATH (e_value=5e-123) CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1;; (*TAIR) AT3G59360.2 (e_value=4e-124) | Symbols: UTR6, ATUTR6 | UDP-galactose transporter 6 | chr3:21935826-21939642 REVERSE LENGTH=405;; (*ITAG) Solyc11g008610.1.1 (e_value=4e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2796072-2804558 transcript_region:SL2.40ch11:2796072..2804558- go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 **** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00001361g0004.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|2|0|147; (*GB) gi|268326826|emb|CAT00084.1| (e_value=3e-43) hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Coffea arabica];; (*TAIR) AT1G65450.3 (e_value=4e-31) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:24318035-24318895 FORWARD LENGTH=286;; (*ITAG) Solyc11g008630.1.1 (e_value=4e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2820292-2822959 transcript_region:SL2.40ch11:2820292..2822959+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00061135g0003.1 protein AED:0.84 eAED:0.84 QI:0|0.33|0|0.5|1|1|4|0|268; (*GB) gi|255544860|ref|XP_002513491.1| (e_value=2e-81) GTP-binding protein enga, putative [Ricinus communis];; (*SWP) sp|B0TFW3|DER_HELMI (e_value=1e-23) GTPase Der OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=der PE=3 SV=1;; (*TAIR) AT3G12080.2 (e_value=7e-77) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851677 FORWARD LENGTH=587;; (*ITAG) Solyc11g065870.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48525816-48539876 transcript_region:SL2.40ch11:48525816..48539876+ go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein engA (AHRD V1 ***- Q9LH58_ARATH); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0005525,GO:0005622 NbS00044903g0005.1 protein AED:0.24 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|314; (*GB) gi|224128452|ref|XP_002320335.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02816.1 (e_value=8e-51) | Symbols: | Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166;; (*ITAG) Solyc09g075230.1.1 (e_value=5e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62492731-62493246 transcript_region:SL2.40ch09:62492731..62493246- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00044903g0007.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|132 NbS00044903g0009.1 protein AED:0.14 eAED:0.14 QI:1203|1|1|1|1|1|2|515|102 NbS00008794g0009.1 protein AED:0.24 eAED:0.25 QI:0|0.5|0.38|0.92|0.33|0.30|13|0|737; (*GB) gi|356533289|ref|XP_003535198.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 9-like [Glycine max];; (*SWP) sp|Q8L850|PI5K9_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana GN=PIP5K9 PE=1 SV=2;; (*TAIR) AT3G09920.3 (e_value=0.0) | Symbols: PIP5K9 | phosphatidyl inositol monophosphate 5 kinase | chr3:3040426-3043676 REVERSE LENGTH=815;; (*ITAG) Solyc09g008480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1921241-1929572 transcript_region:SL2.40ch09:1921241..1929572- go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase 9 (AHRD V1 ***- B6SXI7_MAIZE); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00008794g0007.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|1|0.5|2|0|117 NbS00024017g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|212274771|ref|NP_001130104.1| (e_value=9e-53) uncharacterized protein LOC100191197 precursor [Zea mays];; (*SWP) sp|Q9ZQ23|FLA3_ARATH (e_value=9e-43) Fasciclin-like arabinogalactan protein 3 OS=Arabidopsis thaliana GN=FLA3 PE=2 SV=1;; (*TAIR) AT2G24450.1 (e_value=7e-44) | Symbols: FLA3 | FASCICLIN-like arabinogalactan protein 3 precursor | chr2:10393019-10393861 REVERSE LENGTH=280;; (*ITAG) Solyc08g006300.2.1 (e_value=1e-93) genomic_reference:SL2.40ch08 gene_region:964361-965748 transcript_region:SL2.40ch08:964361..965748+ functional_description:"Fasciclin-like arabinogalactan protein 17 (AHRD V1 *-*- A9XTM2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00024017g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.2|0.16|0.5|1|1|6|0|282; (*GB) gi|255548626|ref|XP_002515369.1| (e_value=2e-32) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|P0DH85|REM10_ARATH (e_value=2e-28) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=2e-29) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc08g006240.1.1 (e_value=2e-78) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00024017g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|212274771|ref|NP_001130104.1| (e_value=8e-47) uncharacterized protein LOC100191197 precursor [Zea mays];; (*SWP) sp|Q9LTW9|FLA14_ARATH (e_value=4e-39) Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1;; (*TAIR) AT3G12660.1 (e_value=3e-40) | Symbols: FLA14 | FASCICLIN-like arabinogalactan protein 14 precursor | chr3:4019060-4019827 FORWARD LENGTH=255;; (*ITAG) Solyc08g006300.2.1 (e_value=7e-82) genomic_reference:SL2.40ch08 gene_region:964361-965748 transcript_region:SL2.40ch08:964361..965748+ functional_description:"Fasciclin-like arabinogalactan protein 17 (AHRD V1 *-*- A9XTM2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00014167g0001.1 protein AED:0.14 eAED:0.14 QI:111|1|1|1|0|0|3|352|148; (*GB) gi|225424182|ref|XP_002284123.1| (e_value=4e-54) PREDICTED: uncharacterized protein LOC100254317 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-34) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT5G17450.1 (e_value=2e-45) | Symbols: HIPP21 | Heavy metal transport/detoxification superfamily protein | chr5:5755386-5756743 FORWARD LENGTH=149;; (*ITAG) Solyc03g043640.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:11084805-11087342 transcript_region:SL2.40ch03:11084805..11087342+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00007080g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|3|0|180; (*GB) gi|237664617|gb|ACR09747.1| (e_value=1e-74) DIV2B protein [Heptacodium miconioides];; (*TAIR) AT2G38090.1 (e_value=8e-61) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc05g052610.2.1 (e_value=3e-91) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00003475g0006.1 protein AED:0.11 eAED:0.11 QI:235|1|0.5|1|1|1|2|0|493; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=0.0) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=7e-94) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=5e-95) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc03g115940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59566770-59569400 transcript_region:SL2.40ch03:59566770..59569400- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00001141g0001.1 protein AED:0.05 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|325|481; (*GB) gi|224091337|ref|XP_002309226.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU79|PAO5_ARATH (e_value=1e-157) Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1;; (*TAIR) AT4G29720.1 (e_value=9e-159) | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533;; (*ITAG) Solyc07g039310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:44257867-44259408 transcript_region:SL2.40ch07:44257867..44259408+ go_terms:GO:0046592 functional_description:"Polyamine oxidase (AHRD V1 **** Q8LL67_AMAHP); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592 NbS00001141g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|201; (*TAIR) AT5G56880.1 (e_value=3e-13) | Symbols: | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23009140-23009619 REVERSE LENGTH=159; NbS00004727g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|1|1|1|2|0|261; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=4e-51) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=4e-45) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT1G01420.1 (e_value=1e-25) | Symbols: UGT72B3 | UDP-glucosyl transferase 72B3 | chr1:154566-156011 REVERSE LENGTH=481;; (*ITAG) Solyc03g078240.1.1 (e_value=3e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43774855-43776398 transcript_region:SL2.40ch03:43774855..43776398- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00016336g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|297807051|ref|XP_002871409.1| (e_value=1e-60) hypothetical protein ARALYDRAFT_908976 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G10190.1 (e_value=2e-62) | Symbols: | Major facilitator superfamily protein | chr5:3199205-3201140 FORWARD LENGTH=488;; (*ITAG) Solyc04g055080.2.1 (e_value=1e-68) genomic_reference:SL2.40ch04 gene_region:52802031-52804119 transcript_region:SL2.40ch04:52802031..52804119+ go_terms:GO:0005351 functional_description:"Transporter major facilitator family (AHRD V1 ***- B5IUM5_9EURY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00016336g0004.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|158; (*GB) gi|11465970|ref|NP_054512.1| (e_value=5e-78) cytochrome f [Nicotiana tabacum];; (*SWP) sp|P06449|CYF_TOBAC (e_value=2e-79) Apocytochrome f OS=Nicotiana tabacum GN=petA PE=3 SV=1;; (*ITAG) ATCG00540.1 (e_value=6e-72) | Symbols: PETA | photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320;; (*ITAG) Solyc01g007380.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1859332-1860294 transcript_region:SL2.40ch01:1859332..1860294+ go_terms:GO:0031361 functional_description:"Apocytochrome f (AHRD V1 ***- D3WBH0_9AQUA); contains Interpro domain(s) IPR002325 Cytochrome f "; GO:0031361 NbS00030428g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0|0|2|0|112; (*GB) gi|255545460|ref|XP_002513790.1| (e_value=2e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G08280.1 (e_value=3e-31) | Symbols: | Thioredoxin superfamily protein | chr4:5230345-5231196 FORWARD LENGTH=126;; (*ITAG) Solyc11g012940.1.1 (e_value=1e-54) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5787890-5792395 transcript_region:SL2.40ch11:5787890..5792395+ functional_description:"Glutaredoxin 2 (AHRD V1 ***- B6T1H7_MAIZE); contains Interpro domain(s) IPR008554 Glutaredoxin 2 "; NbS00030428g0007.1 protein AED:0.18 eAED:0.18 QI:210|1|1|1|1|1|4|383|217; (*GB) gi|298204564|emb|CBI23839.3| (e_value=2e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q90515|TMEDA_TAKRU (e_value=5e-36) Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1;; (*TAIR) AT1G09580.1 (e_value=1e-92) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc11g013000.1.1 (e_value=9e-128) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5850497-5854023 transcript_region:SL2.40ch11:5850497..5854023+ go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00010695g0008.1 protein AED:0.07 eAED:0.07 QI:153|0.92|0.8|1|0.78|0.73|15|173|722; (*GB) gi|359490274|ref|XP_002269873.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis vinifera];; (*SWP) sp|Q39189|RH7_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2;; (*TAIR) AT5G62190.1 (e_value=0.0) | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980542-24983879 REVERSE LENGTH=671;; (*ITAG) Solyc03g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1555122-1560373 transcript_region:SL2.40ch03:1555122..1560373- go_terms:GO:0004004,GO:0017151 functional_description:"ATP-dependent DEAD-box RNA helicase DeaD (AHRD V1 *-** D5SAR5_9MICC); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0017151 NbS00010695g0009.1 protein AED:0.21 eAED:0.21 QI:33|1|0.91|1|0.72|0.75|12|281|356; (*GB) gi|297742650|emb|CBI34799.3| (e_value=4e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G22860.1 (e_value=3e-22) | Symbols: | Cell cycle regulated microtubule associated protein | chr4:11997735-12001281 FORWARD LENGTH=509;; (*ITAG) Solyc06g035440.2.1 (e_value=2e-154) genomic_reference:SL2.40ch06 gene_region:21031767-21036331 transcript_region:SL2.40ch06:21031767..21036331+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009820g0011.1 protein AED:0.16 eAED:0.16 QI:65|1|0.66|1|1|0.66|3|0|544; (*GB) gi|113205181|gb|AAT40530.2| (e_value=0.0) zinc finger family protein, putative [Solanum demissum];; (*SWP) sp|Q6T486|RBRA_DICDI (e_value=2e-17) Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1;; (*TAIR) AT5G60250.1 (e_value=9e-140) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655;; (*ITAG) Solyc06g005000.2.1 (e_value=6e-159) genomic_reference:SL2.40ch06 gene_region:3688-7998 transcript_region:SL2.40ch06:3688..7998+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00009820g0008.1 protein AED:0.16 eAED:0.16 QI:164|1|1|1|1|1|11|619|703; (*GB) gi|225425869|ref|XP_002266262.1| (e_value=0.0) PREDICTED: 2,4-dichlorophenol 6-monooxygenase [Vitis vinifera];; (*SWP) sp|Q8KN28|TFDB_DELAC (e_value=1e-45) 2,4-dichlorophenol 6-monooxygenase OS=Delftia acidovorans GN=tfdB PE=1 SV=3;; (*TAIR) AT1G24340.1 (e_value=0.0) | Symbols: EMB260, EMB2421 | FAD/NAD(P)-binding oxidoreductase family protein | chr1:8635416-8638866 FORWARD LENGTH=709;; (*ITAG) Solyc05g006810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1420716-1427230 transcript_region:SL2.40ch05:1420716..1427230+ go_terms:GO:0008152,GO:0055114 functional_description:"FAD-binding monooxygenase PheA/TfdB family (AHRD V1 ***- A9GSW2_SORC5); contains Interpro domain(s) IPR002938 Monooxygenase, FAD-binding "; GO:0008152,GO:0055114 NbS00018172g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|0|101; (*GB) gi|217323620|gb|ACK38177.1| (e_value=2e-21) hydrogen peroxide-induced 1 [Nicotiana tabacum];; (*TAIR) AT3G03150.1 (e_value=8e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727733-729357 REVERSE LENGTH=121;; (*ITAG) Solyc06g072840.2.1 (e_value=2e-28) genomic_reference:SL2.40ch06 gene_region:41308566-41309389 transcript_region:SL2.40ch06:41308566..41309389- functional_description:"Seed specific protein Bn15D1B (AHRD V1 ***- B6TIB8_MAIZE)"; NbS00018172g0001.1 protein AED:0.13 eAED:0.15 QI:0|0.66|0.5|1|1|1|4|417|198; (*GB) gi|224139102|ref|XP_002326768.1| (e_value=2e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|P41127|RL131_ARATH (e_value=9e-107) 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1;; (*TAIR) AT3G49010.3 (e_value=7e-108) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=5e-110) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00014548g0005.1 protein AED:0.18 eAED:0.19 QI:0|0.85|0.75|1|0.57|0.62|8|0|601; (*GB) gi|225423893|ref|XP_002281668.1| (e_value=0.0) PREDICTED: Di-glucose binding protein with Leucine-rich repeat domain-like [Vitis vinifera];; (*SWP) sp|C0LGT5|Y5169_ARATH (e_value=1e-27) Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1;; (*TAIR) AT1G25570.1 (e_value=0.0) | Symbols: | Di-glucose binding protein with Leucine-rich repeat domain | chr1:8992183-8995430 REVERSE LENGTH=628;; (*ITAG) Solyc05g009800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4015410-4023011 transcript_region:SL2.40ch05:4015410..4023011- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00052549g0004.1 protein AED:0.07 eAED:0.09 QI:0|0.2|0|1|0.4|0.5|6|0|524; (*GB) gi|551259|emb|CAA57428.1| (e_value=0.0) beta-fructofuranosidase [Nicotiana tabacum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.1 (e_value=0.0) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19509273 REVERSE LENGTH=590;; (*ITAG) Solyc10g085360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63890782-63895052 transcript_region:SL2.40ch10:63890782..63895052+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00044950g0012.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.4|1|0.75|0.6|5|75|209; (*GB) gi|255569682|ref|XP_002525806.1| (e_value=6e-100) catalytic, putative [Ricinus communis];; (*TAIR) AT4G38370.1 (e_value=4e-88) | Symbols: | Phosphoglycerate mutase family protein | chr4:17970112-17971222 REVERSE LENGTH=225;; (*ITAG) Solyc01g112160.2.1 (e_value=8e-135) genomic_reference:SL2.40ch01 gene_region:89993262-89997889 transcript_region:SL2.40ch01:89993262..89997889+ go_terms:GO:0003824 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- B6UI41_MAIZE); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003824 NbS00044950g0014.1 protein AED:0.17 eAED:0.19 QI:0|1|0.33|1|1|0.66|3|0|708; (*GB) gi|224132414|ref|XP_002328263.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL48|SLY1_ARATH (e_value=0.0) SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1;; (*TAIR) AT2G17980.1 (e_value=0.0) | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627;; (*ITAG) Solyc01g112150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89990409-89993077 transcript_region:SL2.40ch01:89990409..89993077- go_terms:GO:0051535 functional_description:"Sec1-1 syntaxin binding protein (AHRD V1 *--* Q3SEL6_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0051535 NbS00044950g0010.1 protein AED:0.20 eAED:0.20 QI:245|1|0.8|1|0.5|0.6|5|0|525; (*GB) gi|255572694|ref|XP_002527280.1| (e_value=0.0) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=1e-115) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=9e-117) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89987101-89989597 transcript_region:SL2.40ch01:89987101..89989597- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00038858g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|255638049|gb|ACU19339.1| (e_value=4e-37) unknown [Glycine max];; (*TAIR) AT2G32380.1 (e_value=4e-36) | Symbols: | Transmembrane protein 97, predicted | chr2:13746792-13747730 REVERSE LENGTH=168;; (*ITAG) Solyc07g052430.2.1 (e_value=8e-52) genomic_reference:SL2.40ch07 gene_region:58261778-58264731 transcript_region:SL2.40ch07:58261778..58264731+ functional_description:"Transmembrane protein 97 (AHRD V1 *-*- TMM97_HUMAN); contains Interpro domain(s) IPR016964 Transmembrane protein 97, predicted "; NbS00038858g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.2|0|1|0.4|0.66|6|0|216; (*GB) gi|147838102|emb|CAN60928.1| (e_value=5e-41) hypothetical protein VITISV_008356 [Vitis vinifera];; (*TAIR) AT3G21700.1 (e_value=2e-35) | Symbols: ATSGP2, SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=291;; (*ITAG) Solyc12g005840.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:474797-477406 transcript_region:SL2.40ch12:474797..477406- go_terms:GO:0007264,GO:0015031,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 *-*- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005622 NbS00038858g0005.1 protein AED:0.01 eAED:0.01 QI:101|1|1|1|0|0|3|628|85; (*GB) gi|225444355|ref|XP_002266186.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100265882 [Vitis vinifera];; (*TAIR) AT1G05205.1 (e_value=2e-49) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1509352-1510249 REVERSE LENGTH=91;; (*ITAG) Solyc07g052420.2.1 (e_value=1e-51) genomic_reference:SL2.40ch07 gene_region:58253247-58259534 transcript_region:SL2.40ch07:58253247..58259534- functional_description:"Chromosome 15 contig 1 DNA sequence (AHRD V1 ***- Q00UQ3_OSTTA)"; NbS00011277g0003.1 protein AED:0.05 eAED:0.08 QI:0|0.85|0.75|1|0.85|0.87|8|181|396; (*GB) gi|255537964|ref|XP_002510047.1| (e_value=7e-121) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q6NKN9|BH074_ARATH (e_value=2e-64) Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1;; (*TAIR) AT1G10120.1 (e_value=1e-65) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3304228-3305984 REVERSE LENGTH=366;; (*ITAG) Solyc04g077480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59989923-59993699 transcript_region:SL2.40ch04:59989923..59993699- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00001724g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.77|0.8|1|0.33|0.3|10|831|427; (*GB) gi|359487320|ref|XP_003633566.1| (e_value=0.0) PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Vitis vinifera];; (*SWP) sp|O94808|GFPT2_HUMAN (e_value=2e-130) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3;; (*TAIR) AT3G24090.1 (e_value=0.0) | Symbols: | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971 REVERSE LENGTH=677;; (*ITAG) Solyc01g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising "; GO:0008152,GO:0005975,GO:0005737 NbS00057605g0002.1 protein AED:0.47 eAED:0.61 QI:51|1|0.66|1|0.5|0.66|3|25|46 NbS00013181g0003.1 protein AED:0.19 eAED:0.21 QI:1840|0.55|0.6|0.8|0.55|0.6|10|0|251; (*GB) gi|225463157|ref|XP_002268154.1| (e_value=2e-60) PREDICTED: FYVE and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera];; (*TAIR) AT2G26210.1 (e_value=3e-29) | Symbols: | Ankyrin repeat family protein | chr2:11157654-11159016 FORWARD LENGTH=190;; (*ITAG) Solyc06g031680.2.1 (e_value=1e-69) genomic_reference:SL2.40ch06 gene_region:17306390-17314675 transcript_region:SL2.40ch06:17306390..17314675+ go_terms:GO:0008270 functional_description:"FYVE zinc finger family protein (AHRD V1 ***- B4FKR4_MAIZE); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0008270 NbS00001868g0004.1 protein AED:0.00 eAED:0.00 QI:199|1|1|1|1|1|2|400|81; (*ITAG) Solyc07g021340.2.1 (e_value=6e-24) genomic_reference:SL2.40ch07 gene_region:16969514-16970157 transcript_region:SL2.40ch07:16969514..16970157+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061750g0004.1 protein AED:0.28 eAED:0.28 QI:3|0.5|0.33|0.66|0.5|0.66|3|0|112; (*GB) gi|388490814|gb|AFK33473.1| (e_value=1e-51) unknown [Medicago truncatula];; (*TAIR) AT4G26190.1 (e_value=1e-30) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:13262473-13266282 REVERSE LENGTH=1057;; (*ITAG) Solyc02g065790.2.1 (e_value=1e-72) genomic_reference:SL2.40ch02 gene_region:31507421-31512311 transcript_region:SL2.40ch02:31507421..31512311+ functional_description:"Phosphoprotein phosphatase (AHRD V1 *--- B6K603_SCHJY); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00004797g0006.1 protein AED:0.10 eAED:0.11 QI:0|1|0.75|1|1|1|8|0|680; (*GB) gi|359490833|ref|XP_003634174.1| (e_value=0.0) PREDICTED: two-component response regulator-like APRR5-like [Vitis vinifera];; (*SWP) sp|Q689G6|PRR95_ORYSJ (e_value=3e-110) Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1;; (*TAIR) AT5G24470.1 (e_value=1e-87) | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667;; (*ITAG) Solyc03g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45684377-45689929 transcript_region:SL2.40ch03:45684377..45689929- go_terms:GO:0006355 functional_description:"Pseudo response regulator (AHRD V1 ***- B9IDF0_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00004797g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|191; (*GB) gi|156066385|gb|ABU43058.1| (e_value=7e-73) NDR1/HIN1-like protein [Vitis vinifera];; (*TAIR) AT5G53730.1 (e_value=2e-58) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:21808072-21808713 REVERSE LENGTH=213;; (*ITAG) Solyc03g081230.1.1 (e_value=3e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45673596-45674237 transcript_region:SL2.40ch03:45673596..45674237- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZI2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00015467g0001.1 protein AED:0.02 eAED:0.02 QI:530|0|0.66|1|0|0.66|3|604|361; (*GB) gi|224090379|ref|XP_002308978.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=3e-106) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT2G26600.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase superfamily protein | chr2:11316727-11318215 FORWARD LENGTH=388;; (*ITAG) Solyc07g008150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2853468-2858349 transcript_region:SL2.40ch07:2853468..2858349- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6SUM3_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00001048g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|355; (*GB) gi|225432700|ref|XP_002278782.1| (e_value=3e-111) PREDICTED: uncharacterized protein LOC100259691 [Vitis vinifera];; (*TAIR) AT1G05440.1 (e_value=2e-77) | Symbols: | C-8 sterol isomerases | chr1:1596374-1597843 REVERSE LENGTH=384;; (*ITAG) Solyc09g082180.2.1 (e_value=8e-178) genomic_reference:SL2.40ch09 gene_region:63386514-63387979 transcript_region:SL2.40ch09:63386514..63387979- go_terms:GO:0016020 functional_description:"Unknown Protein (AHRD V1)"; GO:0016020 NbS00001048g0004.1 protein AED:0.24 eAED:0.30 QI:0|0|0|1|1|1|2|0|121; (*GB) gi|297737072|emb|CBI26273.3| (e_value=7e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G22540.1 (e_value=3e-40) | Symbols: | Protein of unknown function (DUF1677) | chr3:7984233-7984565 REVERSE LENGTH=110;; (*ITAG) Solyc09g082190.1.1 (e_value=2e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63394455-63394805 transcript_region:SL2.40ch09:63394455..63394805- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00001048g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|763; (*GB) gi|225432698|ref|XP_002278762.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera];; (*SWP) sp|O23337|PP311_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1;; (*TAIR) AT4G14820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8507794-8510038 REVERSE LENGTH=722;; (*ITAG) Solyc09g082170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63384146-63386475 transcript_region:SL2.40ch09:63384146..63386475+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBB4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00015322g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.92|1|0.38|0.35|14|422|327; (*GB) gi|6647900|sp|P93394.1|UPP_TOBAC (e_value=1e-157) RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; AltName: Full=UMP pyrophosphorylase;; (*SWP) sp|P93394|UPP_TOBAC (e_value=3e-159) Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1;; (*TAIR) AT3G53900.2 (e_value=1e-131) | Symbols: UPP, PYRR | uracil phosphoribosyltransferase | chr3:19956914-19959006 REVERSE LENGTH=296;; (*ITAG) Solyc09g011300.2.1 (e_value=6e-160) genomic_reference:SL2.40ch09 gene_region:4641043-4645919 transcript_region:SL2.40ch09:4641043..4645919+ go_terms:GO:0005515,GO:0004845 functional_description:"Uracil phosphoribosyltransferase (AHRD V1 **** B6U5U2_MAIZE); contains Interpro domain(s) IPR005765 Uracil phosphoribosyl transferase "; GO:0005515,GO:0004845 NbS00003034g0013.1 protein AED:0.15 eAED:0.15 QI:160|1|1|1|0|0.4|5|1185|174; (*GB) gi|224108583|ref|XP_002314899.1| (e_value=5e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT1G68730.1 (e_value=2e-28) | Symbols: | Zim17-type zinc finger protein | chr1:25810321-25811128 REVERSE LENGTH=170;; (*ITAG) Solyc05g010070.2.1 (e_value=3e-77) genomic_reference:SL2.40ch05 gene_region:4273949-4278144 transcript_region:SL2.40ch05:4273949..4278144+ functional_description:"DNL zinc finger family protein (AHRD V1 *--- B6TGI7_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00003034g0008.1 protein AED:0.00 eAED:0.00 QI:119|1|1|1|0|0|2|340|272; (*ITAG) Solyc05g010080.2.1 (e_value=7e-19) genomic_reference:SL2.40ch05 gene_region:4278057-4279291 transcript_region:SL2.40ch05:4278057..4279291- functional_description:"Unknown Protein (AHRD V1)"; NbS00003034g0012.1 protein AED:0.01 eAED:0.04 QI:0|0.75|0.6|1|0.75|0.8|5|185|1386; (*GB) gi|359472721|ref|XP_002277950.2| (e_value=0.0) PREDICTED: tRNA-specific adenosine deaminase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9S7I0|TADA_ARATH (e_value=9e-127) tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis thaliana GN=TADA PE=1 SV=1;; (*TAIR) AT1G68720.1 (e_value=7e-128) | Symbols: TADA, ATTADA | tRNA arginine adenosine deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307;; (*ITAG) Solyc05g010100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4280523-4287174 transcript_region:SL2.40ch05:4280523..4287174- go_terms:GO:0016787,GO:0003824 functional_description:"tRNA-adenosine deaminase (AHRD V1 *-*- D9S0K8_9FIRM); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0016787,GO:0003824 NbS00003034g0107.1 protein AED:0.15 eAED:0.16 QI:0|0.81|0.66|1|1|1|12|0|1168 NbS00003034g0102.1 protein AED:0.69 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|262 NbS00003034g0112.1 protein AED:0.19 eAED:0.19 QI:5|1|0.85|1|0.83|0.85|7|0|292 NbS00003034g0111.1 protein AED:0.24 eAED:0.26 QI:0|0.87|0.77|1|0.87|0.77|9|328|791 NbS00010491g0011.1 protein AED:0.04 eAED:0.04 QI:135|1|1|1|1|1|5|178|193; (*GB) gi|37783267|gb|AAP42502.1| (e_value=3e-122) peroxiredoxin [Ipomoea batatas];; (*SWP) sp|Q9M7T0|PRX2F_ARATH (e_value=5e-104) Peroxiredoxin-2F, mitochondrial OS=Arabidopsis thaliana GN=PRXIIF PE=1 SV=2;; (*TAIR) AT3G06050.1 (e_value=4e-105) | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | chr3:1826311-1827809 REVERSE LENGTH=201;; (*ITAG) Solyc01g079820.2.1 (e_value=4e-129) genomic_reference:SL2.40ch01 gene_region:71459091-71462906 transcript_region:SL2.40ch01:71459091..71462906- go_terms:GO:0016491,GO:0045454 functional_description:"Redoxin domain protein (AHRD V1 **-- A1WHD5_VEREI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00010491g0006.1 protein AED:0.49 eAED:0.51 QI:0|0|0|0.33|1|1|3|0|169; (*ITAG) Solyc01g058710.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:60769677-60771321 transcript_region:SL2.40ch01:60769677..60771321+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010491g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.77|0.9|0.9|0.66|0.6|10|443|418; (*GB) gi|255552299|ref|XP_002517194.1| (e_value=2e-74) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=2e-27) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.2 (e_value=1e-28) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc01g079810.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:71451798-71457617 transcript_region:SL2.40ch01:71451798..71457617+ functional_description:"RING-H2 finger protein (Fragment) (AHRD V1 *-*- Q7X9M1_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; NbS00022486g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|181; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=4e-116) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=1e-117) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=4e-94) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=7e-114) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00022486g0007.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.33|1|1|3|0|132; (*ITAG) Solyc03g034230.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:10205170-10208243 transcript_region:SL2.40ch03:10205170..10208243- functional_description:"Unknown Protein (AHRD V1)"; NbS00022486g0002.1 protein AED:0.09 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|133; (*ITAG) Solyc02g085980.1.1 (e_value=8e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43361786-43362250 transcript_region:SL2.40ch02:43361786..43362250- functional_description:"Unknown Protein (AHRD V1)"; NbS00056813g0001.1 protein AED:0.04 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|297740765|emb|CBI30947.3| (e_value=3e-53) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g023510.1.1 (e_value=2e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:16967002-16967463 transcript_region:SL2.40ch08:16967002..16967463+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000837g0016.1 protein AED:0.11 eAED:0.11 QI:182|1|1|1|1|1|4|294|129; (*GB) gi|224117998|ref|XP_002317708.1| (e_value=8e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17780.1 (e_value=2e-59) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT1G48440.1); Has 102 Blast hits to 102 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6087016-6088128 FORWARD LENGTH=129;; (*ITAG) Solyc03g097970.2.1 (e_value=7e-80) genomic_reference:SL2.40ch03 gene_region:53785982-53789328 transcript_region:SL2.40ch03:53785982..53789328+ go_terms:GO:0005515 functional_description:"Erwinia induced protein 2 (AHRD V1 ***- B4FAP8_MAIZE)"; GO:0005515 NbS00000837g0015.1 protein AED:0.22 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|330318596|gb|AEC10965.1| (e_value=4e-68) 50S ribosomal protein L29 [Camellia sinensis];; (*SWP) sp|Q9FJP3|RK29_ARATH (e_value=8e-59) 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1;; (*TAIR) AT5G65220.1 (e_value=6e-60) | Symbols: | Ribosomal L29 family protein | chr5:26061301-26062506 FORWARD LENGTH=173;; (*ITAG) Solyc03g097950.2.1 (e_value=3e-85) genomic_reference:SL2.40ch03 gene_region:53779606-53781960 transcript_region:SL2.40ch03:53779606..53781960+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L29 (AHRD V1 ***- B6TS58_MAIZE); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0005840 NbS00000837g0014.1 protein AED:0.31 eAED:0.32 QI:566|0.7|0.81|1|0.7|0.81|11|0|626; (*GB) gi|255585520|ref|XP_002533451.1| (e_value=0.0) Potassium channel SKOR, putative [Ricinus communis];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=0.0) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=0.0) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc03g097940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53768344-53779007 transcript_region:SL2.40ch03:53768344..53779007+ go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** O04242_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00000837g0022.1 protein AED:0.24 eAED:0.24 QI:237|0.5|0.33|1|0|0|3|0|327; (*GB) gi|224118064|ref|XP_002317723.1| (e_value=7e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27660.1 (e_value=1e-35) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc03g097960.1.1 (e_value=4e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53783330-53784391 transcript_region:SL2.40ch03:53783330..53784391- go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0019992,GO:0020037 NbS00000837g0018.1 protein AED:0.28 eAED:0.28 QI:205|1|1|1|1|1|8|374|837; (*GB) gi|359491768|ref|XP_002267445.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242391 [Vitis vinifera];; (*SWP) sp|P93163|GPA2_SOYBN (e_value=1e-47) Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1;; (*TAIR) AT1G31930.3 (e_value=0.0) | Symbols: XLG3 | extra-large GTP-binding protein 3 | chr1:11465832-11468961 FORWARD LENGTH=848;; (*ITAG) Solyc03g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53790071-53796491 transcript_region:SL2.40ch03:53790071..53796491- go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00059043g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|1620986|emb|CAA70082.1| (e_value=7e-54) 40S ribosomal protein S17 [Nicotiana plumbaginifolia];; (*SWP) sp|Q605C1|RS17_METCA (e_value=4e-25) 30S ribosomal protein S17 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=rpsQ PE=3 SV=1;; (*TAIR) AT1G49400.1 (e_value=2e-48) | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116;; (*ITAG) Solyc12g009380.1.1 (e_value=8e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2671827-2673707 transcript_region:SL2.40ch12:2671827..2673707+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 ***- B4FMH4_MAIZE); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00001584g0009.1 protein AED:0.18 eAED:0.19 QI:902|0.57|0.5|1|0.85|1|8|0|599; (*GB) gi|225438293|ref|XP_002269713.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267920 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STW5|MACP2_ARATH (e_value=0.0) MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1;; (*TAIR) AT4G24290.2 (e_value=0.0) | Symbols: | MAC/Perforin domain-containing protein | chr4:12594856-12597815 FORWARD LENGTH=606;; (*ITAG) Solyc04g048950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:37836463-37848150 transcript_region:SL2.40ch04:37836463..37848150+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00007215g0002.1 protein AED:0.00 eAED:0.00 QI:140|1|1|1|0.66|0.75|4|103|291; (*GB) gi|224065324|ref|XP_002301774.1| (e_value=3e-147) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48850.1 (e_value=6e-129) | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306;; (*ITAG) Solyc06g007970.2.1 (e_value=4e-178) genomic_reference:SL2.40ch06 gene_region:1822287-1825304 transcript_region:SL2.40ch06:1822287..1825304- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00047682g0003.1 protein AED:0.12 eAED:0.12 QI:587|0.33|0.75|1|1|1|4|316|356; (*GB) gi|357516443|ref|XP_003628510.1| (e_value=7e-26) hypothetical protein MTR_8g060700 [Medicago truncatula];; (*SWP) sp|Q8GY87|UBC26_ARATH (e_value=4e-14) Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2;; (*TAIR) AT1G53025.1 (e_value=3e-15) | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19757072-19759474 REVERSE LENGTH=543;; (*ITAG) Solyc10g007000.2.1 (e_value=9e-56) genomic_reference:SL2.40ch10 gene_region:1404113-1409238 transcript_region:SL2.40ch10:1404113..1409238- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00038889g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|257 NbS00038889g0004.1 protein AED:0.16 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|127 NbS00031234g0005.1 protein AED:0.19 eAED:0.19 QI:219|1|1|1|0.75|0.69|13|377|485; (*GB) gi|60459371|gb|AAX20031.1| (e_value=0.0) RING-finger protein [Capsicum annuum];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=0.0) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc02g093520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48940256-48944306 transcript_region:SL2.40ch02:48940256..48944306+ go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00016038g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|255557589|ref|XP_002519824.1| (e_value=3e-58) Transcriptional regulator SUPERMAN, putative [Ricinus communis];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=1e-19) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT4G17810.1 (e_value=3e-34) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:9906918-9907532 FORWARD LENGTH=204;; (*ITAG) Solyc08g077000.1.1 (e_value=9e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:58110613-58111449 transcript_region:SL2.40ch08:58110613..58111449- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY6_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00054458g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=1e-174) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=5e-143) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=4e-144) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc07g065540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64480321-64481556 transcript_region:SL2.40ch07:64480321..64481556+ functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00014260g0020.1 protein AED:0.17 eAED:0.17 QI:199|0.82|0.83|1|0.88|0.94|18|450|1033; (*GB) gi|359472626|ref|XP_002280664.2| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase recG-like [Vitis vinifera];; (*SWP) sp|Q55681|RECG_SYNY3 (e_value=2e-136) ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1;; (*TAIR) AT2G01440.1 (e_value=0.0) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr2:193950-199056 REVERSE LENGTH=973;; (*ITAG) Solyc05g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2454868-2465497 transcript_region:SL2.40ch05:2454868..2465497+ go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase RECG-like (AHRD V1 **** Q6ZFX9_ORYSJ); contains Interpro domain(s) IPR004609 DNA helicase, ATP-dependent, RecG "; GO:0004003 NbS00014260g0016.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|282; (*GB) gi|19913105|emb|CAC84545.1| (e_value=8e-87) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|P0C582|M2OM_NEUCR (e_value=3e-29) Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU04792 PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=1e-77) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=1e-87) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00014260g0003.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|19913107|emb|CAC84546.1| (e_value=7e-82) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=2e-35) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=3e-78) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=1e-83) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00051830g0021.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.14|0.85|0.16|0.28|7|0|308; (*GB) gi|297739878|emb|CBI30060.3| (e_value=3e-153) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SR79|PPA16_ARATH (e_value=3e-135) Probable inactive purple acid phosphatase 16 OS=Arabidopsis thaliana GN=PAP16 PE=2 SV=1;; (*TAIR) AT3G10150.1 (e_value=2e-136) | Symbols: ATPAP16, PAP16 | purple acid phosphatase 16 | chr3:3137502-3139056 REVERSE LENGTH=367;; (*ITAG) Solyc04g016490.2.1 (e_value=2e-179) genomic_reference:SL2.40ch04 gene_region:7311131-7315527 transcript_region:SL2.40ch04:7311131..7315527- go_terms:GO:0004722,GO:0003993 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- C6IM14_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 "; GO:0004722,GO:0003993 NbS00051830g0017.1 protein AED:0.13 eAED:0.16 QI:84|0|0|1|1|0.66|3|0|251; (*GB) gi|350537693|ref|NP_001233793.1| (e_value=1e-57) calmodulin binding protein SUN-like [Solanum lycopersicum];; (*TAIR) AT5G03960.1 (e_value=2e-15) | Symbols: IQD12 | IQ-domain 12 | chr5:1068333-1069683 REVERSE LENGTH=403;; (*ITAG) Solyc04g016480.2.1 (e_value=8e-100) genomic_reference:SL2.40ch04 gene_region:7305326-7308804 transcript_region:SL2.40ch04:7305326..7308804- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 *--* B4FU94_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00051830g0020.1 protein AED:0.29 eAED:0.35 QI:0|0.7|0.54|0.90|0.5|0.54|11|0|413; (*GB) gi|339959595|gb|AEK25530.1| (e_value=0.0) UDP-GlcNac-dolichyl-phosphate N-acetylglucosaminephosphotransferase [Solanum tuberosum];; (*SWP) sp|P0CD61|GPT_DICDI (e_value=1e-80) UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Dictyostelium discoideum GN=alg7 PE=3 SV=1;; (*TAIR) AT2G41490.1 (e_value=5e-167) | Symbols: GPT | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase | chr2:17301762-17304030 FORWARD LENGTH=431;; (*ITAG) Solyc04g016520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7338776-7344302 transcript_region:SL2.40ch04:7338776..7344302- go_terms:GO:0003975 functional_description:"UDP-N-acetylglucosamine dolichyl phosphate N-acetylglucosamine-1-phosphate transferase (AHRD V1 **** Q8TGX0_ASPNG); contains Interpro domain(s) IPR018481 Glycosyl transferase, family 4, conserved region "; GO:0003975 NbS00051830g0018.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.33|0.83|1|1|6|0|614; (*GB) gi|225441355|ref|XP_002276914.1| (e_value=0.0) PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like [Vitis vinifera];; (*SWP) sp|O22212|PRP4_ARATH (e_value=0.0) U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1;; (*TAIR) AT2G41500.1 (e_value=0.0) | Symbols: LIS, EMB2776 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | chr2:17304319-17306855 REVERSE LENGTH=554;; (*ITAG) Solyc04g016510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7335360-7338722 transcript_region:SL2.40ch04:7335360..7338722+ go_terms:GO:0045505 functional_description:"Guanine nucleotide-binding protein subunit beta-4 (AHRD V1 *--* GBB4_HUMAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00051830g0024.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|3|0|306; (*GB) gi|19859|emb|CAA38324.1| (e_value=0.0) glucan endo-1,3-beta-glucosidase [Nicotiana tabacum];; (*SWP) sp|P36401|E13H_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT3G57270.1 (e_value=8e-107) | Symbols: BG1 | beta-1,3-glucanase 1 | chr3:21191336-21193118 REVERSE LENGTH=340;; (*ITAG) Solyc10g079860.1.1 (e_value=6e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60654548-60655705 transcript_region:SL2.40ch10:60654548..60655705- go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q68V46_OLEEU); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00038620g0004.1 protein AED:0.23 eAED:0.25 QI:201|0.6|0.5|1|0.6|0.66|6|0|305; (*GB) gi|225428320|ref|XP_002282989.1| (e_value=7e-163) PREDICTED: phosphate carrier protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=3e-82) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT2G17270.1 (e_value=9e-148) | Symbols: PHT3;3 | phosphate transporter 3;3 | chr2:7510456-7512118 FORWARD LENGTH=309;; (*ITAG) Solyc03g032030.2.1 (e_value=1e-153) genomic_reference:SL2.40ch03 gene_region:8815863-8821682 transcript_region:SL2.40ch03:8815863..8821682- go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9H646_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00028090g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|359490753|ref|XP_003634156.1| (e_value=2e-86) PREDICTED: uncharacterized protein LOC100854009 [Vitis vinifera];; (*TAIR) AT5G24460.1 (e_value=1e-77) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8354815-8355717 FORWARD LENGTH=300;; (*ITAG) Solyc03g081220.1.1 (e_value=3e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45669593-45670462 transcript_region:SL2.40ch03:45669593..45670462+ functional_description:"Genomic DNA chromosome 5 BAC clone T7 (AHRD V1 ***- Q9FGE4_ARATH)"; NbS00028090g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|1|0.87|8|0|764; (*GB) gi|359490833|ref|XP_003634174.1| (e_value=3e-175) PREDICTED: two-component response regulator-like APRR5-like [Vitis vinifera];; (*SWP) sp|Q6LA42|APRR5_ARATH (e_value=2e-95) Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2;; (*TAIR) AT5G24470.1 (e_value=2e-94) | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667;; (*ITAG) Solyc03g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45684377-45689929 transcript_region:SL2.40ch03:45684377..45689929- go_terms:GO:0006355 functional_description:"Pseudo response regulator (AHRD V1 ***- B9IDF0_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00028090g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|359490751|ref|XP_003634155.1| (e_value=5e-93) PREDICTED: protein NDR1 [Vitis vinifera];; (*TAIR) AT5G53730.1 (e_value=1e-73) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:21808072-21808713 REVERSE LENGTH=213;; (*ITAG) Solyc03g081230.1.1 (e_value=4e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45673596-45674237 transcript_region:SL2.40ch03:45673596..45674237- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZI2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00033846g0008.1 protein AED:0.15 eAED:0.15 QI:76|1|0.6|1|1|1|5|0|630; (*GB) gi|225431495|ref|XP_002274844.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265977 [Vitis vinifera];; (*SWP) sp|Q8CTA4|CSD_STAES (e_value=4e-21) Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1;; (*ITAG) Solyc11g005860.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:687944-690811 transcript_region:SL2.40ch11:687944..690811+ go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase (AHRD V1 **-- A4A4I5_9GAMM); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00033846g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.77|0.7|0.9|0.55|0.7|10|646|447; (*GB) gi|296088556|emb|CBI37547.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-64) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G64600.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:25825178-25827931 FORWARD LENGTH=522;; (*ITAG) Solyc11g005870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:691719-702561 transcript_region:SL2.40ch11:691719..702561- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00008075g0007.1 protein AED:0.10 eAED:0.10 QI:192|0.95|0.95|1|0.91|0.87|24|206|1107; (*GB) gi|356576819|ref|XP_003556527.1| (e_value=0.0) PREDICTED: topless-related protein 3-like [Glycine max];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=0.0) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=0.0) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00008075g0003.1 protein AED:0.06 eAED:0.06 QI:79|0.85|0.87|1|0.85|0.75|8|225|415; (*GB) gi|225450661|ref|XP_002282985.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 5 [Vitis vinifera];; (*SWP) sp|O80492|P2C05_ARATH (e_value=0.0) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00001607g0003.1 protein AED:0.10 eAED:0.10 QI:136|1|0.66|1|0.5|0.33|3|0|624; (*GB) gi|297739953|emb|CBI30135.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C977|PP135_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1;; (*TAIR) AT1G80270.3 (e_value=0.0) | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | chr1:30181265-30183331 FORWARD LENGTH=596;; (*ITAG) Solyc12g020050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:13965325-13970236 transcript_region:SL2.40ch12:13965325..13970236+ go_terms:GO:0003677 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003677 NbS00023020g0004.1 protein AED:0.07 eAED:0.07 QI:127|0.9|0.90|1|1|1|11|278|1022; (*GB) gi|16326133|dbj|BAB70510.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=8e-93) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT5G11510.1 (e_value=4e-94) | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein 3r-4 | chr5:3680452-3684684 FORWARD LENGTH=961;; (*ITAG) Solyc08g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54627590-54635874 transcript_region:SL2.40ch08:54627590..54635874+ go_terms:GO:0003713,GO:0003700 functional_description:"Transcription factor myb (AHRD V1 *-** Q5QT32_ORYSA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003713,GO:0003700 NbS00032579g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.92|0.86|1|0.85|0.73|15|319|924; (*GB) gi|224114483|ref|XP_002316773.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZTX8|ARFF_ARATH (e_value=0.0) Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2;; (*TAIR) AT1G30330.1 (e_value=0.0) | Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=933;; (*ITAG) Solyc07g043620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54884781-54890195 transcript_region:SL2.40ch07:54884781..54890195- go_terms:GO:0003700 functional_description:"Auxin response factor 6-1 (AHRD V1 **** D9IUY5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00032579g0011.1 protein AED:0.32 eAED:0.32 QI:353|1|1|1|0.81|0.91|12|399|415; (*GB) gi|350538483|ref|NP_001234089.1| (e_value=0.0) geranyl pyrophosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q5HZ00|SPS3_ARATH (e_value=0.0) Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1;; (*TAIR) AT2G34630.2 (e_value=0.0) | Symbols: GPPS, GPS1 | geranyl diphosphate synthase 1 | chr2:14578689-14581632 FORWARD LENGTH=422;; (*ITAG) Solyc08g023470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16804765-16817064 transcript_region:SL2.40ch08:16804765..16817064+ go_terms:GO:0046982 functional_description:"Solanesyl diphosphate synthase (AHRD V1 ***- Q2JP50_SYNJB); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0046982 NbS00032579g0012.1 protein AED:0.12 eAED:0.32 QI:0|0|0|1|0|0|4|0|202; (*GB) gi|46398239|gb|AAS91797.1| (e_value=2e-17) MuDRA-like transposase [Cucumis melo];; (*ITAG) Solyc03g093100.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00020839g0005.1 protein AED:0.10 eAED:0.10 QI:15|0.82|0.83|1|0.88|0.77|18|722|1731; (*GB) gi|147766845|emb|CAN76416.1| (e_value=0.0) hypothetical protein VITISV_029037 [Vitis vinifera];; (*SWP) sp|Q9FWQ5|HAC12_ARATH (e_value=0.0) Histone acetyltransferase HAC12 OS=Arabidopsis thaliana GN=HAC12 PE=2 SV=2;; (*TAIR) AT1G16710.1 (e_value=0.0) | Symbols: HAC12 | histone acetyltransferase of the CBP family 12 | chr1:5714692-5721782 FORWARD LENGTH=1706;; (*ITAG) Solyc04g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2212040-2228571 transcript_region:SL2.40ch04:2212040..2228571+ go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00029558g0010.1 protein AED:0.09 eAED:0.10 QI:0|0.33|0.28|1|0.66|0.71|7|0|810; (*GB) gi|331703946|gb|AED89984.1| (e_value=0.0) PSL1a [Solanum chacoense x Solanum tuberosum];; (*TAIR) AT1G34355.1 (e_value=2e-58) | Symbols: ATPS1, PS1 | forkhead-associated (FHA) domain-containing protein | chr1:12536497-12541730 FORWARD LENGTH=1477;; (*ITAG) Solyc06g065450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37239229-37242562 transcript_region:SL2.40ch06:37239229..37242562- functional_description:"Forkhead-associated domain-containing protein (AHRD V1 *-*- D7KK60_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00029558g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|225460694|ref|XP_002270196.1| (e_value=8e-158) PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C8N5|STOP1_ARATH (e_value=5e-142) Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1;; (*TAIR) AT1G34370.1 (e_value=4e-143) | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12551002-12552501 FORWARD LENGTH=499;; (*ITAG) Solyc06g065440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37237366-37238421 transcript_region:SL2.40ch06:37237366..37238421+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KK61_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00001319g0014.1 protein AED:0.19 eAED:0.31 QI:0|0|0|0.5|0|0.5|2|0|146; (*GB) gi|357436271|ref|XP_003588411.1| (e_value=5e-47) Cytochrome c oxidase subunit [Medicago truncatula];; (*SWP) sp|P07506|COX1_SOYBN (e_value=1e-43) Cytochrome c oxidase subunit 1 OS=Glycine max GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=2e-43) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00001319g0009.1 protein AED:0.17 eAED:0.20 QI:0|0|0.5|1|0|0|2|187|183; (*GB) gi|225465032|ref|XP_002264774.1| (e_value=8e-22) PREDICTED: uncharacterized protein LOC100249643 [Vitis vinifera];; (*TAIR) AT1G79160.1 (e_value=9e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779862-29780668 REVERSE LENGTH=239;; (*ITAG) Solyc07g066570.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:65187912-65188759 transcript_region:SL2.40ch07:65187912..65188759- functional_description:">F3O9.30 (AHRD V1 ***- Q9SA48_ARATH)"; NbS00001319g0010.1 protein AED:0.40 eAED:0.40 QI:133|0.75|1|1|0|0.4|5|170|77 NbS00001319g0110.1 protein AED:0.44 eAED:0.54 QI:0|0|0|0.66|0.5|0.33|3|0|206 NbS00001319g0109.1 protein AED:0.33 eAED:0.37 QI:0|0.66|0.71|1|1|1|7|0|287 NbS00001319g0218.1 protein AED:0.11 eAED:0.11 QI:76|0.75|0.88|1|1|1|9|29|365 NbS00001319g0217.1 protein AED:0.15 eAED:0.16 QI:161|0.71|0.75|1|0.71|0.75|8|142|1033 NbS00001319g0219.1 protein AED:0.27 eAED:0.26 QI:0|0.9|0.81|1|0.8|0.90|11|561|373 NbS00001319g0207.1 protein AED:0.24 eAED:0.28 QI:0|0|0|1|1|1|3|0|167 NbS00001319g0208.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|1|1|3|0|122 NbS00014355g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|231; (*GB) gi|255541240|ref|XP_002511684.1| (e_value=6e-99) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45260.1 (e_value=3e-87) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=3e-107) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00024336g0003.1 protein AED:0.24 eAED:0.57 QI:0|0|0.5|1|0|0|2|339|84 NbS00024336g0006.1 protein AED:0.10 eAED:0.11 QI:145|1|0.87|1|0.85|0.75|8|0|291; (*GB) gi|359475871|ref|XP_002285449.2| (e_value=3e-172) PREDICTED: protein MEMO1-like [Vitis vinifera];; (*SWP) sp|Q6DJ03|MEMO1_XENTR (e_value=2e-98) Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1;; (*TAIR) AT2G25280.1 (e_value=4e-164) | Symbols: | CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). | chr2:10762639-10764631 REVERSE LENGTH=291;; (*ITAG) Solyc08g029110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22666640-22676056 transcript_region:SL2.40ch08:22666640..22676056- go_terms:GO:0005515 functional_description:"DUF52 domain-containing protein (AHRD V1 **-- C5FFY6_NANOT); contains Interpro domain(s) IPR002737 UPF0103/Mediator of ErbB2-driven cell motility (Memo), related "; GO:0005515 NbS00059411g0008.1 protein AED:0.21 eAED:0.21 QI:302|0.83|0.71|1|0.66|0.57|7|315|455; (*GB) gi|296087695|emb|CBI34951.3| (e_value=1e-170) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G70280.2 (e_value=2e-129) | Symbols: | NHL domain-containing protein | chr1:26466086-26468471 REVERSE LENGTH=509;; (*ITAG) Solyc02g087010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44144541-44148357 transcript_region:SL2.40ch02:44144541..44148357+ functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KY00_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00059411g0007.1 protein AED:0.25 eAED:0.25 QI:594|0.71|0.75|1|0.57|0.75|8|0|689; (*GB) gi|112259089|gb|ABI14646.1| (e_value=0.0) putative high-affinity potassium transporter protein 1 [Nicotiana tabacum];; (*SWP) sp|Q6YWQ4|HAK25_ORYSJ (e_value=0.0) Potassium transporter 25 OS=Oryza sativa subsp. japonica GN=HAK25 PE=2 SV=1;; (*TAIR) AT5G14880.1 (e_value=0.0) | Symbols: | Potassium transporter family protein | chr5:4814244-4817667 FORWARD LENGTH=781;; (*ITAG) Solyc02g087000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44137630-44143256 transcript_region:SL2.40ch02:44137630..44143256+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00044343g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.33|1|1|3|0|624; (*GB) gi|225441834|ref|XP_002284060.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264133 [Vitis vinifera];; (*TAIR) AT2G41770.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF288) | chr2:17424549-17427042 REVERSE LENGTH=771;; (*ITAG) Solyc01g087600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74313470-74318705 transcript_region:SL2.40ch01:74313470..74318705+ functional_description:"Protein E03H4.4 partially confirmed by transcript evidence (AHRD V1 *-*- O17744_CAEEL)"; NbC25991670g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|4|419|237; (*GB) gi|359477609|ref|XP_002280338.2| (e_value=4e-67) PREDICTED: uncharacterized protein LOC100244302 [Vitis vinifera];; (*TAIR) AT5G43630.1 (e_value=3e-41) | Symbols: TZP | zinc knuckle (CCHC-type) family protein | chr5:17527261-17530207 FORWARD LENGTH=831;; (*ITAG) Solyc09g083390.1.1 (e_value=5e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64430826-64435389 transcript_region:SL2.40ch09:64430826..64435389- go_terms:GO:0005634,GO:0008270 functional_description:"Genomic DNA chromosome 5 TAC clone K9D7 (AHRD V1 *-*- Q9FIX7_ARATH); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00008013g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|0.5|0.66|3|0|364; (*GB) gi|142942397|gb|ABO92972.1| (e_value=4e-141) no apical meristem (NAM)-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=2e-95) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT1G26870.1 (e_value=1e-96) | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425;; (*ITAG) Solyc05g007550.1.1 (e_value=1e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2096116-2098418 transcript_region:SL2.40ch05:2096116..2098418+ go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00000656g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|296088333|emb|CBI36778.3| (e_value=9e-15) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6K5P9|GL22_ORYSJ (e_value=8e-14) Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1;; (*TAIR) AT5G39120.1 (e_value=4e-14) | Symbols: | RmlC-like cupins superfamily protein | chr5:15662705-15663486 REVERSE LENGTH=221;; (*ITAG) Solyc09g090010.2.1 (e_value=2e-20) genomic_reference:SL2.40ch09 gene_region:64931262-64932969 transcript_region:SL2.40ch09:64931262..64932969- go_terms:GO:0050162 functional_description:"Germin-like protein 12 (AHRD V1 ***- C6T5E1_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00034831g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|423; (*GB) gi|224084249|ref|XP_002307242.1| (e_value=7e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SCT2|PP277_ARATH (e_value=6e-100) Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1;; (*TAIR) AT3G50420.1 (e_value=5e-101) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18710871-18713649 REVERSE LENGTH=794;; (*ITAG) Solyc02g090240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46438332-46440841 transcript_region:SL2.40ch02:46438332..46440841- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00034831g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|255562697|ref|XP_002522354.1| (e_value=9e-49) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SCT2|PP277_ARATH (e_value=1e-32) Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1;; (*TAIR) AT3G50420.1 (e_value=1e-33) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18710871-18713649 REVERSE LENGTH=794;; (*ITAG) Solyc02g090240.2.1 (e_value=6e-80) genomic_reference:SL2.40ch02 gene_region:46438332-46440841 transcript_region:SL2.40ch02:46438332..46440841- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00034831g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00035835g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|185; (*GB) gi|147859810|emb|CAN83558.1| (e_value=3e-45) hypothetical protein VITISV_010715 [Vitis vinifera];; (*ITAG) Solyc06g051770.1.1 (e_value=3e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:31883001-31883555 transcript_region:SL2.40ch06:31883001..31883555- functional_description:"Unknown Protein (AHRD V1)"; NbS00007127g0109.1 protein AED:0.02 eAED:0.02 QI:123|1|1|1|0|0|3|299|372 NbS00003339g0009.1 protein AED:0.17 eAED:0.18 QI:249|0.81|0.83|1|1|1|12|0|1412; (*GB) gi|225437451|ref|XP_002268905.1| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis vinifera];; (*SWP) sp|O46072|KZ_DROME (e_value=2e-147) Probable ATP-dependent RNA helicase kurz OS=Drosophila melanogaster GN=kz PE=1 SV=1;; (*TAIR) AT1G33390.1 (e_value=0.0) | Symbols: ATFAS4, FAS4 | RNA helicase family protein | chr1:12099738-12104108 REVERSE LENGTH=1237;; (*ITAG) Solyc01g095710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78658133-78666458 transcript_region:SL2.40ch01:78658133..78666458+ go_terms:GO:0004004,GO:0005515 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** Q173G5_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004,GO:0005515 NbS00003339g0004.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|66; (*GB) gi|350536139|ref|NP_001234487.1| (e_value=3e-14) DNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=6e-14) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*ITAG) Solyc10g050860.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46447848-46455490 transcript_region:SL2.40ch10:46447848..46455490- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00003339g0008.1 protein AED:0.09 eAED:0.19 QI:0|0.75|0.4|1|0.5|0.6|5|0|250; (*GB) gi|83284003|gb|ABC01909.1| (e_value=4e-107) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=1e-100) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=9e-102) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=3e-110) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00003339g0006.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|61; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=6e-16) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*ITAG) Solyc08g062450.1.1 (e_value=1e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00012715g0004.1 protein AED:0.30 eAED:0.30 QI:0|1|0.87|1|1|0.87|8|382|286; (*GB) gi|350538483|ref|NP_001234089.1| (e_value=0.0) geranyl pyrophosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q653T6|SPS1_ORYSJ (e_value=4e-159) Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1;; (*TAIR) AT2G34630.1 (e_value=6e-160) | Symbols: GPPS, GPS1 | geranyl diphosphate synthase 1 | chr2:14579726-14581632 FORWARD LENGTH=321;; (*ITAG) Solyc08g023470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16804765-16817064 transcript_region:SL2.40ch08:16804765..16817064+ go_terms:GO:0046982 functional_description:"Solanesyl diphosphate synthase (AHRD V1 ***- Q2JP50_SYNJB); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0046982 NbS00014150g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|286; (*GB) gi|296082225|emb|CBI21230.3| (e_value=7e-114) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FL79|EXP23_ARATH (e_value=8e-108) Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=3;; (*TAIR) AT5G39280.1 (e_value=9e-109) | Symbols: ATEXPA23, ATEXP23, ATHEXP ALPHA 1.17, EXPA23 | expansin A23 | chr5:15730713-15731706 REVERSE LENGTH=259;; (*ITAG) Solyc03g115270.1.1 (e_value=6e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59114292-59115725 transcript_region:SL2.40ch03:59114292..59115725- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- B7TYQ2_9GENT); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00014150g0011.1 protein AED:0.33 eAED:0.78 QI:0|0|0|0.75|0|0.25|4|0|115 NbS00014150g0012.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.28|0.83|0.85|7|0|281; (*ITAG) Solyc06g008150.2.1 (e_value=4e-12) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00014150g0010.1 protein AED:0.00 eAED:0.00 QI:220|1|1|1|1|1|2|267|180; (*GB) gi|255547173|ref|XP_002514644.1| (e_value=2e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G08050.1 (e_value=7e-44) | Symbols: | Protein of unknown function (DUF1118) | chr5:2578418-2578964 FORWARD LENGTH=158;; (*ITAG) Solyc03g115020.2.1 (e_value=3e-65) genomic_reference:SL2.40ch03 gene_region:58930557-58932425 transcript_region:SL2.40ch03:58930557..58932425- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009500 Protein of unknown function DUF1118 "; NbC25362752g0002.1 protein AED:0.37 eAED:0.37 QI:73|1|0|1|0|0|2|0|49 NbS00033574g0005.1 protein AED:0.18 eAED:0.18 QI:346|0.83|0.85|1|0.66|0.71|7|485|732; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=0.0) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|O80983|FTSH4_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana GN=FTSH4 PE=1 SV=2;; (*TAIR) AT2G26140.1 (e_value=0.0) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc08g063050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49804067-49811631 transcript_region:SL2.40ch08:49804067..49811631+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00021665g0003.1 protein AED:0.12 eAED:0.12 QI:98|1|0.85|1|1|1|7|0|370; (*GB) gi|296089819|emb|CBI39638.3| (e_value=7e-153) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=5e-67) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=4e-154) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g100880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82536275-82538541 transcript_region:SL2.40ch01:82536275..82538541- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00013391g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|0.83|0.85|7|0|260; (*GB) gi|224129726|ref|XP_002328787.1| (e_value=4e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|B0S733|REN3A_DANRE (e_value=2e-21) Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2;; (*TAIR) AT1G33980.1 (e_value=2e-84) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482;; (*ITAG) Solyc01g103420.2.1 (e_value=7e-150) genomic_reference:SL2.40ch01 gene_region:83786331-83798238 transcript_region:SL2.40ch01:83786331..83798238+ go_terms:GO:0000166 functional_description:"Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3 "; GO:0000166 NbS00001331g0002.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|81 NbS00044344g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|134 NbS00026564g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|359489532|ref|XP_002273687.2| (e_value=7e-51) PREDICTED: LOB domain-containing protein 31-like [Vitis vinifera];; (*SWP) sp|O22132|LBD19_ARATH (e_value=1e-46) LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1;; (*TAIR) AT2G45410.1 (e_value=1e-47) | Symbols: LBD19 | LOB domain-containing protein 19 | chr2:18712449-18713108 REVERSE LENGTH=191;; (*ITAG) Solyc01g091420.1.1 (e_value=4e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76810419-76814829 transcript_region:SL2.40ch01:76810419..76814829+ functional_description:"LOB domain protein 30 (AHRD V1 ***- D7M5R6_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00030375g0004.1 protein AED:0.02 eAED:0.02 QI:204|1|1|1|1|1|3|0|306; (*GB) gi|225469216|ref|XP_002264407.1| (e_value=6e-95) PREDICTED: transcription factor bHLH93-like [Vitis vinifera];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=8e-68) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=6e-69) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc02g063430.2.1 (e_value=5e-145) genomic_reference:SL2.40ch02 gene_region:30098703-30101097 transcript_region:SL2.40ch02:30098703..30101097- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00054392g0009.1 protein AED:0.01 eAED:0.01 QI:50|1|1|1|1|1|4|261|177; (*GB) gi|28200390|gb|AAO31792.1| (e_value=6e-103) SP3D [Solanum lycopersicum];; (*SWP) sp|Q93WI9|HD3A_ORYSJ (e_value=1e-90) Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A PE=1 SV=1;; (*TAIR) AT1G65480.1 (e_value=4e-86) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc03g063100.1.1 (e_value=1e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:30564833-30568648 transcript_region:SL2.40ch03:30564833..30568648+ go_terms:GO:0008429 functional_description:"SELF PRUNING 3D"; GO:0008429 NbS00054392g0011.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|160; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-69) hypothetical protein [Nicotiana tabacum]; NbS00054392g0010.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-17) hypothetical protein [Nicotiana tabacum]; NbS00059626g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|157; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-47) hypothetical protein [Nicotiana tabacum]; NbS00059626g0002.1 protein AED:0.50 eAED:0.57 QI:0|0|0|1|0|0|2|0|78 NbS00041954g0012.1 protein AED:0.24 eAED:0.30 QI:0|0|0|1|0|0.33|3|0|229; (*GB) gi|57013932|ref|YP_173405.1| (e_value=4e-74) hypothetical protein NitaMp061 [Nicotiana tabacum]; NbS00041954g0011.1 protein AED:0.67 eAED:0.74 QI:0|0|0|0.4|0.5|0.6|5|0|165; (*GB) gi|57013931|ref|YP_173404.1| (e_value=2e-27) ATP synthase F0 subunit 9 [Nicotiana tabacum];; (*SWP) sp|Q07060|ATP9_PETSP (e_value=1e-27) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=7e-23) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00015596g0004.1 protein AED:0.05 eAED:0.05 QI:432|1|1|1|0.8|0.81|11|458|428; (*GB) gi|225444161|ref|XP_002270765.1| (e_value=0.0) PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=0.0) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=0.0) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc02g030230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16032723-16037908 transcript_region:SL2.40ch02:16032723..16037908- go_terms:GO:0050373,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B1XPB1_SYNP2); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0050373,GO:0042803 NbS00002109g0021.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|0.75|0.6|5|0|421; (*GB) gi|225440270|ref|XP_002278843.1| (e_value=0.0) PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q91YP0|L2HDH_MOUSE (e_value=4e-37) L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1;; (*TAIR) AT3G56840.1 (e_value=1e-179) | Symbols: | FAD-dependent oxidoreductase family protein | chr3:21044317-21046177 FORWARD LENGTH=483;; (*ITAG) Solyc10g079440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60290304-60293383 transcript_region:SL2.40ch10:60290304..60293383- go_terms:GO:0016491 functional_description:"FAD-dependent oxidoreductase family protein (AHRD V1 ***- D7LVK2_ARALY); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00002109g0020.1 protein AED:0.03 eAED:0.03 QI:186|1|1|1|0.87|0.77|9|330|229; (*GB) gi|147857564|emb|CAN82884.1| (e_value=5e-114) hypothetical protein VITISV_023155 [Vitis vinifera];; (*SWP) sp|Q8S1Z1|UTP11_ORYSJ (e_value=4e-98) Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2;; (*TAIR) AT3G60360.1 (e_value=1e-91) | Symbols: EDA14, UTP11 | embryo sac development arrest 14 | chr3:22312477-22314002 REVERSE LENGTH=228;; (*ITAG) Solyc10g079430.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60285916-60289754 transcript_region:SL2.40ch10:60285916..60289754+ go_terms:GO:0030515,GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 11 (AHRD V1 ***- B6TNQ8_MAIZE); contains Interpro domain(s) IPR007144 Small-subunit processome, Utp11 "; GO:0030515,GO:0005515 NbS00002109g0022.1 protein AED:0.07 eAED:0.07 QI:183|0.66|0.25|0.75|0.66|0.75|4|0|291; (*GB) gi|359487518|ref|XP_002278737.2| (e_value=4e-133) PREDICTED: uncharacterized protein LOC100263144 [Vitis vinifera];; (*TAIR) AT5G27830.1 (e_value=2e-74) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9861344-9862742 FORWARD LENGTH=300;; (*ITAG) Solyc01g099850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81749334-81753535 transcript_region:SL2.40ch01:81749334..81753535+ functional_description:"Multi-pass transmembrane protein (AHRD V1 ***- Q5CLX7_CRYHO); contains Interpro domain(s) IPR018143 Folate receptor, conserved region "; NbS00002109g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|881; (*GB) gi|225455746|ref|XP_002268440.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Vitis vinifera];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT1G18485.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970;; (*ITAG) Solyc03g114660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58628427-58631087 transcript_region:SL2.40ch03:58628427..58631087+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002109g0019.1 protein AED:0.21 eAED:0.21 QI:93|1|1|1|1|1|13|659|693; (*GB) gi|225455748|ref|XP_002268894.1| (e_value=0.0) PREDICTED: protease 4-like [Vitis vinifera];; (*SWP) sp|P73689|SPPA_SYNY3 (e_value=3e-62) Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA PE=3 SV=1;; (*TAIR) AT1G73990.1 (e_value=0.0) | Symbols: SPPA, SPPA1 | signal peptide peptidase | chr1:27824465-27828807 FORWARD LENGTH=677;; (*ITAG) Solyc03g114640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58611730-58624215 transcript_region:SL2.40ch03:58611730..58624215+ go_terms:GO:0006508 functional_description:"Signal peptide peptidase SppA type (AHRD V1 ***- Q01NK5_SOLUE); contains Interpro domain(s) IPR004635 Peptidase S49, SppA "; GO:0006508 NbS00002109g0007.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|297734119|emb|CBI15366.3| (e_value=1e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=3e-31) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT1G18485.1 (e_value=2e-32) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970;; (*ITAG) Solyc03g114660.1.1 (e_value=2e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58628427-58631087 transcript_region:SL2.40ch03:58628427..58631087+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002109g0008.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|99; (*ITAG) Solyc03g114660.1.1 (e_value=6e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58628427-58631087 transcript_region:SL2.40ch03:58628427..58631087+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014434g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|225429797|ref|XP_002282811.1| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100261165 [Vitis vinifera];; (*TAIR) AT4G31360.1 (e_value=4e-41) | Symbols: | selenium binding | chr4:15221945-15223310 FORWARD LENGTH=186;; (*ITAG) Solyc08g080720.2.1 (e_value=4e-45) genomic_reference:SL2.40ch08 gene_region:61100501-61101420 transcript_region:SL2.40ch08:61100501..61101420- go_terms:GO:0045454 functional_description:"Selenoprotein H (AHRD V1 *-*- A8JGP7_CHLRE); contains Interpro domain(s) IPR011893 SelT/selW/selH selenoprotein "; GO:0045454 NbS00014434g0007.1 protein AED:0.31 eAED:0.35 QI:0|0.5|0.55|1|0.25|0.44|9|211|227; (*GB) gi|225426866|ref|XP_002283515.1| (e_value=1e-95) PREDICTED: uncharacterized protein LOC100265107 isoform 1 [Vitis vinifera];; (*TAIR) AT1G63260.2 (e_value=3e-78) | Symbols: TET10 | tetraspanin10 | chr1:23466975-23468945 REVERSE LENGTH=258;; (*ITAG) Solyc08g080730.2.1 (e_value=2e-103) genomic_reference:SL2.40ch08 gene_region:61105596-61110540 transcript_region:SL2.40ch08:61105596..61110540- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00003748g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|0.75|4|0|437; (*GB) gi|359472659|ref|XP_002279891.2| (e_value=3e-170) PREDICTED: uncharacterized protein LOC100247521 [Vitis vinifera];; (*TAIR) AT1G15060.1 (e_value=6e-158) | Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:5184053-5186856 REVERSE LENGTH=578;; (*ITAG) Solyc04g007450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1113432-1119419 transcript_region:SL2.40ch04:1113432..1119419- go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 *--- B8JCK0_ANAD2); contains Interpro domain(s) IPR016969 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 "; GO:0006508 NbS00003748g0006.1 protein AED:0.66 eAED:0.81 QI:0|0|0|1|0|0.5|2|0|69 NbS00002889g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|642; (*GB) gi|255558694|ref|XP_002520371.1| (e_value=0.0) basic 7S globulin 2 precursor small subunit, putative [Ricinus communis];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=8e-66) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G59080.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:21836812-21838419 FORWARD LENGTH=535;; (*ITAG) Solyc07g045100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55541314-55542963 transcript_region:SL2.40ch07:55541314..55542963+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00002889g0015.1 protein AED:0.14 eAED:0.14 QI:29|0.81|0.83|1|0.63|0.58|12|120|582; (*GB) gi|225447470|ref|XP_002266938.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera];; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=1e-104) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT4G12680.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7475104-7478174 FORWARD LENGTH=575;; (*ITAG) Solyc07g045140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55569354-55573399 transcript_region:SL2.40ch07:55569354..55573399+ functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 ***- Y3739_ARATH)"; NbS00002889g0011.1 protein AED:0.23 eAED:0.23 QI:321|1|1|1|1|1|4|345|241; (*GB) gi|388504934|gb|AFK40533.1| (e_value=9e-76) unknown [Lotus japonicus];; (*TAIR) AT3G07640.1 (e_value=3e-72) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2438171-2439661 FORWARD LENGTH=241;; (*ITAG) Solyc07g045150.2.1 (e_value=2e-134) genomic_reference:SL2.40ch07 gene_region:55575418-55579417 transcript_region:SL2.40ch07:55575418..55579417+ functional_description:"MLP3.9 protein (AHRD V1 ***- Q9SSE6_ARATH)"; NbS00002889g0013.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|0|4|0|302; (*GB) gi|255567222|ref|XP_002524592.1| (e_value=5e-150) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=7e-140) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT3G07620.1 (e_value=5e-141) | Symbols: | Exostosin family protein | chr3:2433267-2434988 REVERSE LENGTH=470;; (*ITAG) Solyc05g016320.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:15551119-15553856 transcript_region:SL2.40ch05:15551119..15553856- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LPB7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00013603g0004.1 protein AED:0.24 eAED:0.24 QI:162|0.9|0.81|1|0.8|0.72|11|14|419; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=0.0) EBP1 [Solanum tuberosum];; (*SWP) sp|P50580|PA2G4_MOUSE (e_value=1e-105) Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3;; (*TAIR) AT3G51800.1 (e_value=0.0) | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=392;; (*ITAG) Solyc06g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1270929-1276535 transcript_region:SL2.40ch06:1270929..1276535+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00057137g0005.1 protein AED:0.29 eAED:0.29 QI:307|0.8|0.87|1|0.8|0.75|16|422|610; (*GB) gi|350537695|ref|NP_001234049.1| (e_value=0.0) cytochrome P450-type monooxygenase 97A29 [Solanum lycopersicum];; (*SWP) sp|Q93VK5|LUT5_ARATH (e_value=0.0) Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana GN=CYP97A3 PE=1 SV=1;; (*TAIR) AT1G31800.1 (e_value=0.0) | Symbols: CYP97A3, LUT5 | cytochrome P450, family 97, subfamily A, polypeptide 3 | chr1:11396440-11399470 FORWARD LENGTH=595;; (*ITAG) Solyc04g051190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49193942-49213054 transcript_region:SL2.40ch04:49193942..49213054- go_terms:GO:0019825,GO:0010291 functional_description:"Cytochrome P450"; GO:0019825,GO:0010291 NbC24663448g0001.1 protein AED:0.23 eAED:0.36 QI:0|0|0.5|1|1|0.5|2|0|128; (*GB) gi|147791766|emb|CAN75046.1| (e_value=5e-52) hypothetical protein VITISV_023142 [Vitis vinifera];; (*SWP) sp|O75691|UTP20_HUMAN (e_value=2e-12) Small subunit processome component 20 homolog OS=Homo sapiens GN=UTP20 PE=1 SV=3;; (*TAIR) AT4G30990.2 (e_value=1e-34) | Symbols: | ARM repeat superfamily protein | chr4:15084456-15097860 FORWARD LENGTH=2620;; (*ITAG) Solyc09g092240.2.1 (e_value=6e-70) genomic_reference:SL2.40ch09 gene_region:66714632-66734123 transcript_region:SL2.40ch09:66714632..66734123- go_terms:GO:0005488 functional_description:"Small subunit processome component 20 homolog (AHRD V1 **-- UTP20_MOUSE); contains Interpro domain(s) IPR011430 Down-regulated in metastasis "; GO:0005488 NbC26249828g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|330|174 NbS00059375g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.25|1|0.33|0|4|0|192; (*GB) gi|225446229|ref|XP_002265034.1| (e_value=5e-69) PREDICTED: extended synaptotagmin-1 [Vitis vinifera];; (*TAIR) AT1G05500.1 (e_value=7e-55) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc07g007680.2.1 (e_value=1e-91) genomic_reference:SL2.40ch07 gene_region:2323848-2335317 transcript_region:SL2.40ch07:2323848..2335317- functional_description:"Plant synaptotagmin (AHRD V1 **-- B9N719_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00059375g0008.1 protein AED:0.13 eAED:0.13 QI:295|1|0.88|1|0.75|0.77|9|0|468; (*GB) gi|47716657|gb|AAT37528.1| (e_value=0.0) purple acid phosphatase 3 [Solanum tuberosum];; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=0.0) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1;; (*TAIR) AT5G34850.1 (e_value=0.0) | Symbols: ATPAP26, PAP26 | purple acid phosphatase 26 | chr5:13108475-13111217 REVERSE LENGTH=475;; (*ITAG) Solyc07g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2316679-2323829 transcript_region:SL2.40ch07:2316679..2323829+ go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase 3 (AHRD V1 **** Q6J5M8_SOLTU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00025649g0002.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|255580704|ref|XP_002531174.1| (e_value=2e-24) Disease resistance response protein, putative [Ricinus communis];; (*TAIR) AT1G58170.1 (e_value=6e-22) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:21536188-21536745 FORWARD LENGTH=185;; (*ITAG) Solyc06g054320.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33626366-33626920 transcript_region:SL2.40ch06:33626366..33626920+ functional_description:"Disease resistance response (AHRD V1 ***- D7L1G4_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010186g0025.1 protein AED:0.10 eAED:0.10 QI:0|0.90|0.75|1|0.90|0.91|12|0|927; (*GB) gi|359490486|ref|XP_003634098.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242348 [Vitis vinifera];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=1e-83) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT1G63700.1 (e_value=0.0) | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily protein | chr1:23625208-23629031 REVERSE LENGTH=883;; (*ITAG) Solyc03g025360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7174598-7181522 transcript_region:SL2.40ch03:7174598..7181522+ go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00010186g0021.1 protein AED:0.15 eAED:0.15 QI:0|1|0.8|1|0.77|0.6|10|386|473; (*GB) gi|302143834|emb|CBI22695.3| (e_value=4e-149) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LF97|ASK21_ARATH (e_value=5e-113) SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1;; (*TAIR) AT3G61415.2 (e_value=2e-114) | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22723052-22725577 REVERSE LENGTH=349;; (*ITAG) Solyc03g025420.2.1 (e_value=3e-170) genomic_reference:SL2.40ch03 gene_region:7222074-7228283 transcript_region:SL2.40ch03:7222074..7228283+ go_terms:GO:0004842 functional_description:"SCF ubiquitin ligase skp1 component (AHRD V1 *--* D3TMR7_GLOMM); contains Interpro domain(s) IPR001232 SKP1 component "; GO:0004842 NbS00010186g0024.1 protein AED:0.25 eAED:0.34 QI:38|1|0.33|1|0.5|0.33|3|0|234; (*GB) gi|225464519|ref|XP_002270615.1| (e_value=2e-56) PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera];; (*TAIR) AT1G02260.1 (e_value=2e-49) | Symbols: | Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502;; (*ITAG) Solyc03g025350.2.1 (e_value=3e-77) genomic_reference:SL2.40ch03 gene_region:7163272-7164740 transcript_region:SL2.40ch03:7163272..7164740+ go_terms:GO:0016021 functional_description:"Citrate transporter family protein (AHRD V1 ***- B6U1G3_MAIZE); contains Interpro domain(s) IPR004680 Divalent ion symporter "; GO:0016021 NbS00010186g0002.1 protein AED:0.28 eAED:0.61 QI:0|0|0|1|1|1|2|0|110; (*SWP) sp|Q9LFF6|H2B8_ARATH (e_value=8e-16) Histone H2B.8 OS=Arabidopsis thaliana GN=At3g53650 PE=1 SV=3;; (*TAIR) AT3G53650.1 (e_value=6e-17) | Symbols: | Histone superfamily protein | chr3:19889358-19889774 FORWARD LENGTH=138;; (*ITAG) Solyc05g055440.1.1 (e_value=1e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:64237122-64237565 transcript_region:SL2.40ch05:64237122..64237565- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00010186g0028.1 protein AED:0.30 eAED:0.30 QI:95|0.83|0.71|1|0.83|0.85|7|331|323; (*GB) gi|363814467|ref|NP_001242868.1| (e_value=2e-135) uncharacterized protein LOC100796920 [Glycine max];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=6e-131) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23430.2 (e_value=3e-117) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12229171-12231493 FORWARD LENGTH=322;; (*ITAG) Solyc03g025410.2.1 (e_value=1e-162) genomic_reference:SL2.40ch03 gene_region:7208399-7213989 transcript_region:SL2.40ch03:7208399..7213989- go_terms:GO:0046983 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 ***- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00010186g0022.1 protein AED:0.35 eAED:0.35 QI:0|1|1|1|0.85|0.87|8|1049|354; (*GB) gi|225464515|ref|XP_002270104.1| (e_value=4e-180) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=5e-168) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23420.2 (e_value=4e-155) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12226288-12228562 FORWARD LENGTH=316;; (*ITAG) Solyc03g025370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7182311-7187586 transcript_region:SL2.40ch03:7182311..7187586- go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- B2WS98_9BRAS); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00052671g0001.1 protein AED:0.20 eAED:0.20 QI:104|1|0.66|1|0|0|3|88|257; (*GB) gi|171854663|dbj|BAG16521.1| (e_value=4e-153) putative CONSTANS interacting protein 2b [Capsicum chinense];; (*SWP) sp|Q8L4B2|NFYC9_ARATH (e_value=5e-82) Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1;; (*TAIR) AT1G08970.2 (e_value=4e-83) | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit C9 | chr1:2883144-2883839 FORWARD LENGTH=231;; (*ITAG) Solyc01g079870.2.1 (e_value=2e-154) genomic_reference:SL2.40ch01 gene_region:71515231-71516797 transcript_region:SL2.40ch01:71515231..71516797- go_terms:GO:0005515,GO:0003700 functional_description:"Nuclear transcription factor Y subunit C-2 (AHRD V1 *-** B4FLF9_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0005515,GO:0003700 NbS00017067g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|0|0.5|2|0|216; (*GB) gi|224074299|ref|XP_002304344.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=9e-61) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G16770.2 (e_value=5e-69) | Symbols: AtMYB9, MYB9 | myb domain protein 9 | chr5:5515209-5516734 FORWARD LENGTH=336;; (*ITAG) Solyc08g076710.2.1 (e_value=5e-84) genomic_reference:SL2.40ch08 gene_region:57817957-57819545 transcript_region:SL2.40ch08:57817957..57819545- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R054_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00017067g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|429; (*GB) gi|134307089|gb|ABO72542.1| (e_value=0.0) inositol polyphosphate kinase [Solanum tuberosum];; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=1e-134) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=3e-127) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc08g005130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:83625-84674 transcript_region:SL2.40ch08:83625..84674- go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00009797g0008.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0.33|0.25|4|0|761; (*GB) gi|225433302|ref|XP_002282386.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 [Vitis vinifera];; (*SWP) sp|Q9T0G7|SUVH9_ARATH (e_value=0.0) Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1;; (*TAIR) AT4G13460.2 (e_value=0.0) | Symbols: SDG22, SUVH9, SET22 | SU(VAR)3-9 homolog 9 | chr4:7824653-7826605 REVERSE LENGTH=650;; (*ITAG) Solyc09g090810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65573418-65575508 transcript_region:SL2.40ch09:65573418..65575508+ go_terms:GO:0005634 functional_description:"Euchromatic histone lysine N-methyltransferase 2 (AHRD V1 *-*- A2CG73_MOUSE); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00009797g0007.1 protein AED:0.19 eAED:0.43 QI:0|0|0|1|0|0|3|0|200; (*ITAG) Solyc01g010790.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:5846694-5847758 transcript_region:SL2.40ch01:5846694..5847758- go_terms:GO:0005515 functional_description:"F-box protein At2g21930 (AHRD V1 ***- D7LCM1_ARALY); contains Interpro domain(s) IPR013187 F-box associated type 3 "; GO:0005515 NbS00038959g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0.57|1|0.66|0.57|7|147|331; (*ITAG) Solyc01g008430.1.1 (e_value=1e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2514786-2517198 transcript_region:SL2.40ch01:2514786..2517198- functional_description:"Unknown Protein (AHRD V1)"; NbS00006803g0015.1 protein AED:0.12 eAED:0.12 QI:115|0.66|0.5|0.75|1|1|4|0|199; (*GB) gi|255558638|ref|XP_002520344.1| (e_value=5e-38) kinesin heavy chain, putative [Ricinus communis];; (*TAIR) AT3G12020.2 (e_value=2e-36) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3827016-3834146 FORWARD LENGTH=1044;; (*ITAG) Solyc06g060140.2.1 (e_value=3e-44) genomic_reference:SL2.40ch06 gene_region:34470333-34494221 transcript_region:SL2.40ch06:34470333..34494221- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00006803g0016.1 protein AED:0.15 eAED:0.16 QI:0|0.87|0.82|0.94|0.81|0.76|17|54|905; (*GB) gi|302141795|emb|CBI18998.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=4e-44) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT1G21730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:7630365-7636247 FORWARD LENGTH=890;; (*ITAG) Solyc06g060140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34470333-34494221 transcript_region:SL2.40ch06:34470333..34494221- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00006803g0012.1 protein AED:0.22 eAED:0.22 QI:45|0|0|0.66|0.5|0.33|3|0|48; (*GB) gi|302141795|emb|CBI18998.3| (e_value=5e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21730.1 (e_value=2e-23) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:7630365-7636247 FORWARD LENGTH=890;; (*ITAG) Solyc06g060140.2.1 (e_value=1e-23) genomic_reference:SL2.40ch06 gene_region:34470333-34494221 transcript_region:SL2.40ch06:34470333..34494221- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00006803g0005.1 protein AED:0.26 eAED:0.35 QI:0|0.66|0.7|1|0.44|0.4|10|1254|261; (*GB) gi|356554625|ref|XP_003545645.1| (e_value=2e-55) PREDICTED: aspartic proteinase Asp1-like [Glycine max];; (*SWP) sp|A2ZC67|ASP1_ORYSI (e_value=1e-24) Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2;; (*TAIR) AT1G44130.1 (e_value=1e-44) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:16787508-16789318 REVERSE LENGTH=405;; (*ITAG) Solyc06g060130.2.1 (e_value=2e-82) genomic_reference:SL2.40ch06 gene_region:34464964-34469756 transcript_region:SL2.40ch06:34464964..34469756+ go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00006803g0104.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.62|1|0.85|1|8|0|856 NbS00008375g0023.1 protein AED:0.17 eAED:0.19 QI:0|0.7|0.61|1|0.75|0.71|21|47|1347; (*GB) gi|359491311|ref|XP_002281720.2| (e_value=0.0) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=2e-173) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=2e-174) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc06g069670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39776906-39790412 transcript_region:SL2.40ch06:39776906..39790412+ go_terms:GO:0030036 functional_description:"Formin 2A (AHRD V1 *-*- C7BGM8_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00008375g0025.1 protein AED:0.02 eAED:0.02 QI:263|1|0.5|1|1|1|2|0|1100; (*GB) gi|359491677|ref|XP_002281604.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g74360-like [Vitis vinifera];; (*SWP) sp|C0LGJ1|Y1743_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1;; (*TAIR) AT1G74360.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:27954299-27957911 FORWARD LENGTH=1106;; (*ITAG) Solyc06g069650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39767907-39771642 transcript_region:SL2.40ch06:39767907..39771642- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00008375g0029.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|111; (*GB) gi|225457319|ref|XP_002284686.1| (e_value=1e-55) PREDICTED: dCTP pyrophosphatase 1 [Vitis vinifera];; (*SWP) sp|Q9QY93|DCTP1_MOUSE (e_value=5e-23) dCTP pyrophosphatase 1 OS=Mus musculus GN=Dctpp1 PE=1 SV=1;; (*TAIR) AT3G25400.1 (e_value=2e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141;; (*ITAG) Solyc06g069640.2.1 (e_value=8e-65) genomic_reference:SL2.40ch06 gene_region:39764308-39765116 transcript_region:SL2.40ch06:39764308..39765116- go_terms:GO:0000287,GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- D9SGR6_9PROT); contains Interpro domain(s) IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 "; GO:0000287,GO:0047429 NbS00008375g0009.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|224102573|ref|XP_002312730.1| (e_value=1e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=3e-24) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=2e-25) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g091710.1.1 (e_value=2e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00008375g0006.1 protein AED:0.27 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|254 NbS00008375g0031.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|225457339|ref|XP_002284698.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100260477 [Vitis vinifera];; (*TAIR) AT5G61340.1 (e_value=8e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24662064-24663044 REVERSE LENGTH=326;; (*ITAG) Solyc06g069680.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39791234-39792238 transcript_region:SL2.40ch06:39791234..39792238- functional_description:"Genomic DNA chromosome 5 P1 clone MFB13 (AHRD V1 ***- Q9FLJ9_ARATH)"; NbS00024250g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.25|0.2|0.6|0.5|0.4|5|0|365; (*GB) gi|225437316|ref|XP_002263944.1| (e_value=4e-111) PREDICTED: stress-related protein-like [Vitis vinifera];; (*SWP) sp|Q9SW70|SRP_VITRI (e_value=1e-111) Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1;; (*TAIR) AT3G05500.1 (e_value=2e-77) | Symbols: | Rubber elongation factor protein (REF) | chr3:1593540-1594802 FORWARD LENGTH=246;; (*ITAG) Solyc09g074930.2.1 (e_value=3e-140) genomic_reference:SL2.40ch09 gene_region:62225793-62227794 transcript_region:SL2.40ch09:62225793..62227794+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00024250g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|63; (*ITAG) Solyc00g181250.2.1 (e_value=8e-18) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024250g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|1475; (*GB) gi|225437318|ref|XP_002267274.1| (e_value=0.0) PREDICTED: translocase of chloroplast 159, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O81283|TC159_ARATH (e_value=0.0) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=0.0) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc09g074940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62229782-62233993 transcript_region:SL2.40ch09:62229782..62233993- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *-*- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00035741g0003.1 protein AED:0.32 eAED:0.32 QI:9|1|0.5|1|1|1|4|0|368; (*GB) gi|8489877|gb|AAF75794.1|AF272710_1 (e_value=0.0) putative 7-transmembrane G-protein-coupled receptor [Solanum chacoense];; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=3e-61) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT5G65280.1 (e_value=0.0) | Symbols: GCL1 | GCR2-like 1 | chr5:26086129-26088069 REVERSE LENGTH=433;; (*ITAG) Solyc11g010170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3257971-3262718 transcript_region:SL2.40ch11:3257971..3262718- functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; NbS00013805g0007.1 protein AED:0.43 eAED:0.43 QI:0|0.33|0|0.5|0.66|0.5|4|0|169; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=1e-89) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=4e-91) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.2 (e_value=5e-87) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1040;; (*ITAG) Solyc09g010060.2.1 (e_value=4e-91) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00032646g0004.1 protein AED:0.45 eAED:0.58 QI:0|1|0.5|1|1|1|2|0|101; (*GB) gi|255550572|ref|XP_002516336.1| (e_value=9e-28) RNA polymerase II transcriptional coactivator KIWI, putative [Ricinus communis];; (*SWP) sp|O65154|KIWI_ARATH (e_value=5e-25) RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1;; (*TAIR) AT5G09250.1 (e_value=4e-26) | Symbols: KIWI | ssDNA-binding transcriptional regulator | chr5:2875421-2876368 REVERSE LENGTH=107;; (*ITAG) Solyc02g061790.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:27884732-27888000 transcript_region:SL2.40ch02:27884732..27888000+ go_terms:GO:0003713,GO:0003697 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 **** C1BJV8_OSMMO); contains Interpro domain(s) IPR003173 Transcriptional coactivator p15 "; GO:0003713,GO:0003697 NbS00028662g0007.1 protein AED:0.32 eAED:0.35 QI:0|0.2|0.33|1|0.2|0.16|6|0|506; (*GB) gi|225424468|ref|XP_002285166.1| (e_value=2e-98) PREDICTED: annexin D5 [Vitis vinifera];; (*SWP) sp|Q9C9X3|ANXD5_ARATH (e_value=2e-64) Annexin D5 OS=Arabidopsis thaliana GN=ANN5 PE=2 SV=2;; (*TAIR) AT1G68090.1 (e_value=2e-65) | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442-25520774 REVERSE LENGTH=316;; (*ITAG) Solyc04g008270.2.1 (e_value=1e-127) genomic_reference:SL2.40ch04 gene_region:1950000-1953840 transcript_region:SL2.40ch04:1950000..1953840- go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00028662g0001.1 protein AED:0.37 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|330318635|gb|AEC10979.1| (e_value=2e-113) dimethylmenaquinone methyltransferase [Camellia sinensis];; (*SWP) sp|Q9FFE0|RRAA2_ARATH (e_value=6e-105) Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1;; (*TAIR) AT5G16450.2 (e_value=5e-106) | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:5374357-5375342 FORWARD LENGTH=166;; (*ITAG) Solyc04g008280.2.1 (e_value=1e-121) genomic_reference:SL2.40ch04 gene_region:1954623-1957620 transcript_region:SL2.40ch04:1954623..1957620+ go_terms:GO:0008757 functional_description:"Regulator of ribonuclease activity A (AHRD V1 ***- B6T0A4_MAIZE); contains Interpro domain(s) IPR010203 Ribonuclease E inhibitor RraA "; GO:0008757 NbS00007613g0013.1 protein AED:0.27 eAED:0.33 QI:354|0.82|0.83|1|0.82|0.94|18|0|689; (*GB) gi|255570069|ref|XP_002525997.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q68F38|VAC14_XENLA (e_value=6e-141) Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc05g017860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:18730429-18754023 transcript_region:SL2.40ch05:18730429..18754023- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00018757g0008.1 protein AED:0.03 eAED:0.03 QI:175|1|1|1|1|1|2|349|334; (*GB) gi|225464680|ref|XP_002275506.1| (e_value=7e-45) PREDICTED: probable membrane-associated kinase regulator 2-like [Vitis vinifera];; (*SWP) sp|Q9SH58|MAKR2_ARATH (e_value=7e-19) Probable membrane-associated kinase regulator 2 OS=Arabidopsis thaliana GN=MAKR2 PE=2 SV=1;; (*TAIR) AT1G64080.1 (e_value=5e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). | chr1:23785230-23786557 REVERSE LENGTH=411;; (*ITAG) Solyc03g007700.1.1 (e_value=2e-142) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:2229811-2230734 transcript_region:SL2.40ch03:2229811..2230734+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018757g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|300; (*GB) gi|302143755|emb|CBI22616.3| (e_value=5e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SW08|AB4G_ARATH (e_value=8e-128) ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1;; (*TAIR) AT4G25750.1 (e_value=6e-129) | Symbols: | ABC-2 type transporter family protein | chr4:13110627-13112360 REVERSE LENGTH=577;; (*ITAG) Solyc03g007690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2213503-2215296 transcript_region:SL2.40ch03:2213503..2215296- go_terms:GO:0008559 functional_description:"ABC transporter G family member 8 (AHRD V1 ***- AB8G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00047154g0003.1 protein AED:0.31 eAED:0.32 QI:0|0.77|0.7|1|0.88|0.8|10|0|508; (*GB) gi|224117802|ref|XP_002331635.1| (e_value=0.0) methylenetetrahydrofolate reductase [Populus trichocarpa];; (*SWP) sp|Q75HE6|MTHR_ORYSJ (e_value=0.0) Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1;; (*TAIR) AT3G59970.3 (e_value=0.0) | Symbols: MTHFR1 | methylenetetrahydrofolate reductase 1 | chr3:22151303-22154323 FORWARD LENGTH=592;; (*ITAG) Solyc11g008870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3044787-3049095 transcript_region:SL2.40ch11:3044787..3049095- go_terms:GO:0055114 functional_description:"Methylenetetrahydrofolate reductase (AHRD V1 ***- A5ATB7_VITVI); contains Interpro domain(s) IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase "; GO:0055114 NbS00020743g0011.1 protein AED:0.33 eAED:0.33 QI:823|1|0.5|1|1|1|2|0|125; (*GB) gi|255581635|ref|XP_002531621.1| (e_value=6e-59) 50S ribosomal protein L15, putative [Ricinus communis];; (*SWP) sp|P25873|RK15_ARATH (e_value=3e-57) 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2;; (*TAIR) AT3G25920.1 (e_value=2e-58) | Symbols: RPL15 | ribosomal protein L15 | chr3:9491268-9492558 REVERSE LENGTH=277;; (*ITAG) Solyc05g009370.2.1 (e_value=5e-66) genomic_reference:SL2.40ch05 gene_region:3518447-3524365 transcript_region:SL2.40ch05:3518447..3524365- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 *-*- B4B3P1_9CHRO); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00020743g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.66|1|0.5|0.44|9|114|1825; (*GB) gi|147861747|emb|CAN81071.1| (e_value=0.0) hypothetical protein VITISV_001976 [Vitis vinifera];; (*TAIR) AT5G07980.1 (e_value=6e-68) | Symbols: | dentin sialophosphoprotein-related | chr5:2549432-2554669 REVERSE LENGTH=1501;; (*ITAG) Solyc03g115250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59097226-59110409 transcript_region:SL2.40ch03:59097226..59110409+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00030832g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|500; (*GB) gi|255578117|ref|XP_002529928.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT5G60710.1 (e_value=0.0) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc11g069600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51315413-51320614 transcript_region:SL2.40ch11:51315413..51320614- go_terms:GO:0008270 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H4 (AHRD V1 *--- ITIH4_HUMAN); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0008270 NbS00030832g0007.1 protein AED:0.38 eAED:0.41 QI:0|1|0.33|1|0.5|0.33|3|0|286; (*GB) gi|225435353|ref|XP_002285265.1| (e_value=4e-121) PREDICTED: uncharacterized protein LOC100233041 isoform 1 [Vitis vinifera];; (*TAIR) AT5G60710.1 (e_value=1e-79) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc11g069600.1.1 (e_value=2e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51315413-51320614 transcript_region:SL2.40ch11:51315413..51320614- go_terms:GO:0008270 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H4 (AHRD V1 *--- ITIH4_HUMAN); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0008270 NbS00044573g0004.1 protein AED:0.22 eAED:0.22 QI:52|0.75|0.66|1|0.75|0.77|9|0|434; (*GB) gi|356553761|ref|XP_003545221.1| (e_value=0.0) PREDICTED: putative methyltransferase NSUN6-like [Glycine max];; (*SWP) sp|Q7TS68|NSUN6_MOUSE (e_value=8e-47) Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2;; (*TAIR) AT1G06560.1 (e_value=2e-170) | Symbols: | NOL1/NOP2/sun family protein | chr1:2007660-2011824 FORWARD LENGTH=599;; (*ITAG) Solyc07g045070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00057157g0003.1 protein AED:0.48 eAED:0.69 QI:0|0|0|1|1|1|2|0|82; (*GB) gi|57013921|ref|YP_173394.1| (e_value=1e-16) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=3e-17) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=5e-18) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=6e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00057157g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|222822695|gb|ACM68460.1| (e_value=5e-45) stress-associated protein 10 [Solanum pennellii];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=3e-36) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=2e-37) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=3e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00057157g0002.1 protein AED:0.54 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=1e-18) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061389g0008.1 protein AED:0.18 eAED:0.18 QI:347|1|0.33|1|0.5|0.66|3|0|135; (*GB) gi|147782757|emb|CAN63437.1| (e_value=1e-21) hypothetical protein VITISV_043015 [Vitis vinifera];; (*TAIR) AT1G11400.3 (e_value=5e-15) | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-3839978 FORWARD LENGTH=204;; (*ITAG) Solyc01g104460.2.1 (e_value=9e-53) genomic_reference:SL2.40ch01 gene_region:84688779-84693304 transcript_region:SL2.40ch01:84688779..84693304+ go_terms:GO:0005515 functional_description:"Partner of Y14 and mago (AHRD V1 *-*- WIBG_CULQU); contains Interpro domain(s) IPR015362 Exon junction complex, Pym "; GO:0005515 NbS00061389g0009.1 protein AED:0.42 eAED:0.42 QI:52|0.6|0.66|1|1|0.83|6|0|179; (*GB) gi|76160923|gb|ABA40425.1| (e_value=2e-104) unknown [Solanum tuberosum];; (*SWP) sp|A4FV84|MRT4_BOVIN (e_value=3e-43) mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1;; (*TAIR) AT1G25260.1 (e_value=4e-83) | Symbols: | Ribosomal protein L10 family protein | chr1:8854163-8855766 REVERSE LENGTH=235;; (*ITAG) Solyc01g104470.2.1 (e_value=5e-108) genomic_reference:SL2.40ch01 gene_region:84693611-84696766 transcript_region:SL2.40ch01:84693611..84696766- go_terms:GO:0003735 functional_description:"mRNA turnover protein 4 homolog (AHRD V1 **-- B5X718_SALSA)"; GO:0003735 NbS00017821g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0|2|965|512; (*GB) gi|225425456|ref|XP_002272556.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Vitis vinifera];; (*SWP) sp|Q8VZE4|PP299_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1;; (*TAIR) AT4G01570.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:679487-681904 FORWARD LENGTH=805;; (*ITAG) Solyc11g008760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2934597-2937056 transcript_region:SL2.40ch11:2934597..2937056- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4T9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00017821g0009.1 protein AED:0.25 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|185; (*ITAG) Solyc11g008750.1.1 (e_value=7e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2931453-2932136 transcript_region:SL2.40ch11:2931453..2932136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017821g0002.1 protein AED:0.34 eAED:0.34 QI:190|1|0.5|1|0|0|2|0|102; (*GB) gi|255574452|ref|XP_002528138.1| (e_value=3e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G44710.1 (e_value=3e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18041621-18042322 FORWARD LENGTH=102;; (*ITAG) Solyc07g056070.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61285893-61286201 transcript_region:SL2.40ch07:61285893..61286201+ functional_description:"Genomic DNA chromosome 5 TAC clone K23L20 (AHRD V1 ***- Q9FIZ2_ARATH); contains Interpro domain(s) IPR013219 Ribosomal protein S27/S33, mitochondrial "; NbS00056011g0002.1 protein AED:0.42 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|124 NbS00054133g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0.33|1|1|1|3|206|510; (*GB) gi|225461628|ref|XP_002285377.1| (e_value=1e-104) PREDICTED: uncharacterized protein LOC100248626 [Vitis vinifera];; (*SWP) sp|Q76LC6|RBM24_DANRE (e_value=6e-16) RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1;; (*TAIR) AT3G15010.2 (e_value=2e-97) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc12g014210.1.1 (e_value=6e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5054503-5055550 transcript_region:SL2.40ch12:5054503..5055550- go_terms:GO:0003688 functional_description:"RNA binding protein (AHRD V1 **-* B6TJJ4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003688 NbS00000571g0008.1 protein AED:0.37 eAED:0.42 QI:188|0.8|0.5|1|0.6|0.83|6|0|215; (*GB) gi|297828720|ref|XP_002882242.1| (e_value=2e-71) hypothetical protein ARALYDRAFT_477497 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=6e-73) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.1 (e_value=5e-74) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:551534-554411 FORWARD LENGTH=364;; (*ITAG) Solyc02g086370.2.1 (e_value=6e-85) genomic_reference:SL2.40ch02 gene_region:43609598-43613135 transcript_region:SL2.40ch02:43609598..43613135+ go_terms:GO:0008195 functional_description:"ER Phosphatidate Phosphatase (AHRD V1 **** B9SJX0_RICCO); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00000571g0009.1 protein AED:0.40 eAED:0.80 QI:0|0.5|0.2|1|0.25|0.2|5|0|208; (*GB) gi|255574320|ref|XP_002528074.1| (e_value=1e-28) phosphatidic acid phosphatase, putative [Ricinus communis];; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=1e-24) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.5 (e_value=3e-26) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:552937-554411 FORWARD LENGTH=314;; (*ITAG) Solyc02g086370.2.1 (e_value=2e-30) genomic_reference:SL2.40ch02 gene_region:43609598-43613135 transcript_region:SL2.40ch02:43609598..43613135+ go_terms:GO:0008195 functional_description:"ER Phosphatidate Phosphatase (AHRD V1 **** B9SJX0_RICCO); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00000571g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|129; (*ITAG) Solyc02g086380.1.1 (e_value=3e-32) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:43613223-43613651 transcript_region:SL2.40ch02:43613223..43613651- functional_description:"Unknown Protein (AHRD V1)"; NbS00001276g0014.1 protein AED:0.19 eAED:0.19 QI:0|0.6|0.83|1|0.4|0.5|6|102|332; (*GB) gi|297743731|emb|CBI36614.3| (e_value=2e-119) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57770.1 (e_value=3e-88) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr5:23401094-23403112 REVERSE LENGTH=406;; (*ITAG) Solyc07g006320.2.1 (e_value=1e-175) genomic_reference:SL2.40ch07 gene_region:1142842-1146191 transcript_region:SL2.40ch07:1142842..1146191+ functional_description:"Genomic DNA chromosome 5 P1 clone MRI1 (AHRD V1 *-*- Q9FHG6_ARATH); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; NbS00001276g0003.1 protein AED:0.09 eAED:0.09 QI:117|1|1|1|0.75|0.77|9|280|538; (*GB) gi|225445738|ref|XP_002271446.1| (e_value=0.0) PREDICTED: GPI mannosyltransferase 3 [Vitis vinifera];; (*SWP) sp|Q1LZA0|PIGB_BOVIN (e_value=7e-121) GPI mannosyltransferase 3 OS=Bos taurus GN=PIGB PE=2 SV=1;; (*TAIR) AT5G14850.1 (e_value=0.0) | Symbols: | Alg9-like mannosyltransferase family | chr5:4802099-4804977 REVERSE LENGTH=548;; (*ITAG) Solyc07g006330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1147728-1151824 transcript_region:SL2.40ch07:1147728..1151824- go_terms:GO:0004169,GO:0004584 functional_description:"Dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase-like (AHRD V1 **** Q656F1_ORYSJ); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0004169,GO:0004584 NbS00001276g0010.1 protein AED:0.27 eAED:0.28 QI:57|0.5|0.6|1|0.75|0.8|5|404|301; (*GB) gi|225445718|ref|XP_002270456.1| (e_value=3e-97) PREDICTED: uncharacterized protein LOC100246646 [Vitis vinifera];; (*TAIR) AT4G28030.1 (e_value=4e-88) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:13937748-13939131 REVERSE LENGTH=274;; (*ITAG) Solyc07g006340.2.1 (e_value=1e-144) genomic_reference:SL2.40ch07 gene_region:1152548-1156100 transcript_region:SL2.40ch07:1152548..1156100- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase-like (AHRD V1 ***- Q84S80_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00018524g0006.1 protein AED:0.23 eAED:0.23 QI:0|0.72|0.58|0.83|0.63|0.75|12|0|375; (*GB) gi|356535139|ref|XP_003536106.1| (e_value=2e-125) PREDICTED: protein MON2 homolog isoform 1 [Glycine max];; (*TAIR) AT5G27970.2 (e_value=2e-91) | Symbols: | ARM repeat superfamily protein | chr5:10004720-10015619 FORWARD LENGTH=1658;; (*ITAG) Solyc09g018340.2.1 (e_value=4e-158) genomic_reference:SL2.40ch09 gene_region:14484996-14489495 transcript_region:SL2.40ch09:14484996..14489495+ functional_description:"Protein MON2 homolog (AHRD V1 **-- MON2_HUMAN)"; NbS00021584g0003.1 protein AED:0.00 eAED:0.00 QI:37|1|1|1|1|1|2|132|297; (*GB) gi|224062882|ref|XP_002300917.1| (e_value=2e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT1G76770.1 (e_value=7e-39) | Symbols: | HSP20-like chaperones superfamily protein | chr1:28813569-28814378 FORWARD LENGTH=244;; (*ITAG) Solyc04g071490.2.1 (e_value=7e-127) genomic_reference:SL2.40ch04 gene_region:56070977-56072202 transcript_region:SL2.40ch04:56070977..56072202+ functional_description:"Cell envelope integrity inner membrane protein TolA (AHRD V1 *-*- B6TVC4_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00024439g0002.1 protein AED:0.43 eAED:0.43 QI:496|0.71|0.75|1|1|1|8|0|262; (*GB) gi|78191396|gb|ABB29919.1| (e_value=2e-93) unknown [Solanum tuberosum];; (*SWP) sp|P30352|SRSF2_CHICK (e_value=2e-23) Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1;; (*TAIR) AT5G64200.2 (e_value=2e-64) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc04g074040.2.1 (e_value=5e-92) genomic_reference:SL2.40ch04 gene_region:57655664-57660174 transcript_region:SL2.40ch04:57655664..57660174+ go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00024439g0011.1 protein AED:0.47 eAED:0.47 QI:70|0.5|0.66|1|0|0.33|3|42|103; (*GB) gi|118484490|gb|ABK94120.1| (e_value=8e-22) unknown [Populus trichocarpa];; (*TAIR) AT5G64200.2 (e_value=8e-23) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc04g074040.2.1 (e_value=1e-24) genomic_reference:SL2.40ch04 gene_region:57655664-57660174 transcript_region:SL2.40ch04:57655664..57660174+ go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00011657g0101.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|72 NbS00016711g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.71|0.85|0.5|0.57|7|0|474; (*GB) gi|224120784|ref|XP_002318416.1| (e_value=4e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=2e-114) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT5G53390.1 (e_value=2e-161) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:21656951-21659207 REVERSE LENGTH=486;; (*ITAG) Solyc03g083380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46776786-46780622 transcript_region:SL2.40ch03:46776786..46780622+ go_terms:GO:0045261 functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- A5UWY0_ROSS1); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; GO:0045261 NbS00038679g0006.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|1|1|2|0|440; (*GB) gi|147794665|emb|CAN78024.1| (e_value=1e-94) hypothetical protein VITISV_031334 [Vitis vinifera];; (*SWP) sp|Q9S793|FRS8_ARATH (e_value=9e-59) Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=2;; (*TAIR) AT1G80010.1 (e_value=7e-60) | Symbols: FRS8 | FAR1-related sequence 8 | chr1:30097565-30099846 FORWARD LENGTH=725;; (*ITAG) Solyc06g068210.1.1 (e_value=1e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38646008-38648236 transcript_region:SL2.40ch06:38646008..38648236- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 ***- FRS8_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00038679g0008.1 protein AED:0.27 eAED:0.63 QI:64|0|0|0.4|0.5|0.4|5|0|201; (*GB) gi|255553259|ref|XP_002517672.1| (e_value=1e-50) hydrolase, putative [Ricinus communis];; (*TAIR) AT1G52510.1 (e_value=9e-47) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:19563039-19565260 REVERSE LENGTH=380;; (*ITAG) Solyc06g068220.2.1 (e_value=7e-87) genomic_reference:SL2.40ch06 gene_region:38650988-38657598 transcript_region:SL2.40ch06:38650988..38657598+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KJH6_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00022892g0003.1 protein AED:0.10 eAED:0.10 QI:108|1|1|1|0.57|0.5|8|166|351; (*GB) gi|225453883|ref|XP_002273090.1| (e_value=0.0) PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Vitis vinifera];; (*SWP) sp|Q9LDX3|UTR4_ARATH (e_value=0.0) UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1;; (*TAIR) AT1G12600.1 (e_value=0.0) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr1:4286414-4288859 REVERSE LENGTH=349;; (*ITAG) Solyc08g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60744080-60747659 transcript_region:SL2.40ch08:60744080..60747659- go_terms:GO:0046964 functional_description:"3&apos-phosphoadenosine 5&apos-phosphosulfate transporter 1 (AHRD V1 **** B2BMP5_CANFA); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0046964 NbS00022892g0019.1 protein AED:0.36 eAED:0.36 QI:0|0.77|0.6|0.8|1|1|10|447|370; (*GB) gi|225426763|ref|XP_002282656.1| (e_value=7e-126) PREDICTED: uncharacterized protein LOC100261574 [Vitis vinifera];; (*TAIR) AT4G11790.1 (e_value=3e-61) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr4:7090456-7093208 FORWARD LENGTH=443;; (*ITAG) Solyc08g080260.2.1 (e_value=7e-173) genomic_reference:SL2.40ch08 gene_region:60736712-60743705 transcript_region:SL2.40ch08:60736712..60743705- go_terms:GO:0046907 functional_description:"RanBP1 domain containing protein (AHRD V1 ***- Q60DL9_ORYSJ); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0046907 NbS00022892g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|329; (*GB) gi|297746072|emb|CBI16128.3| (e_value=7e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T0D6|PP306_ARATH (e_value=2e-122) Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1;; (*TAIR) AT4G11690.1 (e_value=1e-123) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=566;; (*ITAG) Solyc09g010450.1.1 (e_value=4e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3813996-3816296 transcript_region:SL2.40ch09:3813996..3816296+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022892g0002.1 protein AED:0.54 eAED:0.69 QI:0|0|0|0.8|1|1|5|0|172 NbS00022892g0017.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|0|105; (*GB) gi|225432426|ref|XP_002278120.1| (e_value=1e-58) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B isoform 2 [Vitis vinifera];; (*SWP) sp|Q8LGE7|NDA8B_ARATH (e_value=1e-56) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana GN=At5g18800 PE=2 SV=1;; (*TAIR) AT5G18800.2 (e_value=8e-58) | Symbols: | Cox19-like CHCH family protein | chr5:6267304-6268393 FORWARD LENGTH=106;; (*ITAG) Solyc08g080240.2.1 (e_value=3e-73) genomic_reference:SL2.40ch08 gene_region:60728099-60731334 transcript_region:SL2.40ch08:60728099..60731334+ go_terms:GO:0008137 functional_description:"NADH ubiquinone dehydrogenase (AHRD V1 **** B0X766_CULQU); contains Interpro domain(s) IPR010625 CHCH "; GO:0008137 NbS00022892g0021.1 protein AED:0.04 eAED:0.04 QI:263|1|1|1|0.6|0.66|6|434|446; (*GB) gi|225453234|ref|XP_002264685.1| (e_value=0.0) PREDICTED: APO protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XIR4|APO1_ARATH (e_value=0.0) APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1;; (*TAIR) AT1G64810.1 (e_value=0.0) | Symbols: APO1 | Arabidopsis thaliana protein of unknown function (DUF794) | chr1:24086882-24088276 FORWARD LENGTH=436;; (*ITAG) Solyc08g080250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60733665-60736400 transcript_region:SL2.40ch08:60733665..60736400+ functional_description:"APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00059239g0003.1 protein AED:0.07 eAED:0.07 QI:301|0.81|0.83|1|0.81|0.83|12|181|553; (*GB) gi|224094755|ref|XP_002310223.1| (e_value=0.0) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q9XFH4|DDM1_ARATH (e_value=0.0) ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1;; (*TAIR) AT5G66750.1 (e_value=0.0) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764;; (*ITAG) Solyc02g062780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29133439-29143895 transcript_region:SL2.40ch02:29133439..29143895- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 6 (AHRD V1 **-* CHD6_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00011375g0003.1 protein AED:0.25 eAED:0.38 QI:0|0|0|1|1|1|2|0|129; (*ITAG) Solyc04g053070.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00027760g0010.1 protein AED:0.06 eAED:0.06 QI:82|1|1|1|0.88|0.88|18|440|772; (*GB) gi|225436462|ref|XP_002272683.1| (e_value=0.0) PREDICTED: DNA ligase 1 [Vitis vinifera];; (*SWP) sp|Q42572|DNLI1_ARATH (e_value=0.0) DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2;; (*TAIR) AT1G08130.1 (e_value=0.0) | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790;; (*ITAG) Solyc11g066370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49208756-49221834 transcript_region:SL2.40ch11:49208756..49221834- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00027760g0009.1 protein AED:0.12 eAED:0.13 QI:146|1|0.5|1|1|1|2|0|247; (*GB) gi|356547153|ref|XP_003541981.1| (e_value=8e-56) PREDICTED: uncharacterized protein LOC100806513 [Glycine max];; (*TAIR) AT5G22930.1 (e_value=6e-43) | Symbols: | Protein of unknown function (DUF1635) | chr5:7668229-7669315 REVERSE LENGTH=238;; (*ITAG) Solyc11g066360.1.1 (e_value=4e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49204723-49205974 transcript_region:SL2.40ch11:49204723..49205974+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00006147g0009.1 protein AED:0.08 eAED:0.08 QI:109|1|0.5|1|1|1|4|0|425; (*GB) gi|255545214|ref|XP_002513668.1| (e_value=1e-125) ribosomal protein S9, putative [Ricinus communis];; (*SWP) sp|A9IVX6|RS9_BART1 (e_value=3e-43) 30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1;; (*TAIR) AT3G49080.1 (e_value=2e-108) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:18194500-18196657 REVERSE LENGTH=430;; (*ITAG) Solyc10g080160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60857981-60862695 transcript_region:SL2.40ch10:60857981..60862695- go_terms:GO:0005840 functional_description:"30S ribosomal protein S9-like (AHRD V1 *-*- Q9SMU5_ARATH); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0005840 NbS00006147g0010.1 protein AED:0.27 eAED:0.32 QI:0|0.16|0|1|0|0.14|7|0|737; (*GB) gi|225460143|ref|XP_002275945.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Vitis vinifera];; (*SWP) sp|Q9C9I6|PP116_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1;; (*TAIR) AT1G71490.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26933326-26935371 REVERSE LENGTH=681;; (*ITAG) Solyc09g082400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00019760g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|360; (*GB) gi|224139022|ref|XP_002326748.1| (e_value=6e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q38908|XTH30_ARATH (e_value=9e-143) Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2;; (*TAIR) AT1G32170.1 (e_value=7e-144) | Symbols: XTR4, XTH30 | xyloglucan endotransglucosylase/hydrolase 30 | chr1:11575434-11577776 FORWARD LENGTH=343;; (*ITAG) Solyc08g076080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57293904-57298098 transcript_region:SL2.40ch08:57293904..57298098- go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 14 (AHRD V1 **** C0IRH3_ACTDE); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16 "; GO:0016798,GO:0016762 NbS00019760g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.25|1|0.33|0.5|4|0|1293; (*GB) gi|356497399|ref|XP_003517548.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D3-like [Glycine max];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0.0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=0.0) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc08g076320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57452825-57457247 transcript_region:SL2.40ch08:57452825..57457247- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00046910g0006.1 protein AED:0.09 eAED:0.09 QI:9|0.8|0.33|1|0.8|0.83|6|0|884; (*GB) gi|297736029|emb|CBI24067.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=2e-64) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT2G07170.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:2975565-2978692 FORWARD LENGTH=820;; (*ITAG) Solyc07g042580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53367985-53373431 transcript_region:SL2.40ch07:53367985..53373431+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00046910g0007.1 protein AED:0.18 eAED:0.18 QI:694|1|1|1|1|1|6|326|444; (*GB) gi|359484947|ref|XP_002265117.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At5g01020-like [Vitis vinifera];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=6e-154) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G07180.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:2981082-2983271 REVERSE LENGTH=442;; (*ITAG) Solyc07g042590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53378536-53383846 transcript_region:SL2.40ch07:53378536..53383846- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016568g0017.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|618; (*GB) gi|255549456|ref|XP_002515781.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40319876-40322691 transcript_region:SL2.40ch02:40319876..40322691+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00016568g0006.1 protein AED:0.10 eAED:0.15 QI:345|1|0.5|1|0|0|2|0|430; (*GB) gi|225432332|ref|XP_002276324.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100256384 [Vitis vinifera];; (*TAIR) AT5G07900.1 (e_value=2e-49) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00016568g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|255540295|ref|XP_002511212.1| (e_value=4e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G07900.1 (e_value=3e-32) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=5e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00016568g0016.1 protein AED:0.00 eAED:0.00 QI:112|1|1|1|1|1|2|323|114; (*ITAG) Solyc02g082020.2.1 (e_value=1e-25) genomic_reference:SL2.40ch02 gene_region:40332073-40334019 transcript_region:SL2.40ch02:40332073..40334019- functional_description:"Unknown Protein (AHRD V1)"; NbS00016568g0015.1 protein AED:0.01 eAED:0.01 QI:125|1|1|1|1|1|4|479|152; (*GB) gi|81076490|gb|ABB55394.1| (e_value=2e-104) 40S ribosomal protein S15-like [Solanum tuberosum];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=4e-95) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09500.1 (e_value=2e-90) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc02g082000.2.1 (e_value=1e-104) genomic_reference:SL2.40ch02 gene_region:40322179-40324715 transcript_region:SL2.40ch02:40322179..40324715- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_BRAHW); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00005943g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|225468885|ref|XP_002270044.1| (e_value=8e-53) PREDICTED: uncharacterized protein LOC100251709 [Vitis vinifera];; (*TAIR) AT4G22190.1 (e_value=8e-47) | Symbols: | unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). | chr4:11742102-11743265 REVERSE LENGTH=387;; (*ITAG) Solyc02g081150.1.1 (e_value=6e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39789696-39790745 transcript_region:SL2.40ch02:39789696..39790745- functional_description:"Unknown Protein (AHRD V1)"; NbS00005943g0007.1 protein AED:0.20 eAED:0.20 QI:91|0.84|0.71|1|0.92|0.92|14|0|559; (*GB) gi|224118112|ref|XP_002331561.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A3CV35|PAN_METMJ (e_value=1e-31) Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1;; (*TAIR) AT4G04180.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:2020471-2023673 FORWARD LENGTH=609;; (*ITAG) Solyc02g036340.2.1 (e_value=6e-155) genomic_reference:SL2.40ch02 gene_region:21219109-21227995 transcript_region:SL2.40ch02:21219109..21227995- functional_description:"AAA family ATPase (AHRD V1 *-*- Q8F4H4_LEPIN)"; NbS00008269g0001.1 protein AED:0.39 eAED:0.39 QI:57|0|0.66|1|0|0.66|3|363|71; (*GB) gi|255563550|ref|XP_002522777.1| (e_value=2e-25) NOI, putative [Ricinus communis];; (*TAIR) AT5G55850.1 (e_value=1e-25) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc07g065640.2.1 (e_value=1e-30) genomic_reference:SL2.40ch07 gene_region:64560188-64564962 transcript_region:SL2.40ch07:64560188..64564962+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00008269g0013.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0.4|5|0|282; (*GB) gi|71493366|gb|AAZ32787.1| (e_value=4e-124) cellulose synthase-like protein CslE [Nicotiana tabacum];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=2e-65) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT1G55850.1 (e_value=3e-46) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc12g015770.1.1 (e_value=2e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5754505-5759974 transcript_region:SL2.40ch12:5754505..5759974- go_terms:GO:0016020 functional_description:"Cellulose synthase (AHRD V1 ***- Q2HT16_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00008269g0009.1 protein AED:0.21 eAED:0.24 QI:238|0.5|0.2|1|0.5|0.6|5|0|246; (*GB) gi|21595553|gb|AAM66112.1| (e_value=8e-92) putative coated vesicle membrane protein [Arabidopsis thaliana];; (*TAIR) AT3G07680.1 (e_value=2e-94) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g015740.1.1 (e_value=2e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5718806-5721319 transcript_region:SL2.40ch12:5718806..5721319- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00008269g0014.1 protein AED:0.48 eAED:0.65 QI:15|0|0|1|0.5|0.33|3|0|105; (*GB) gi|71493366|gb|AAZ32787.1| (e_value=1e-43) cellulose synthase-like protein CslE [Nicotiana tabacum];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=6e-26) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT1G55850.1 (e_value=2e-16) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc12g015770.1.1 (e_value=5e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5754505-5759974 transcript_region:SL2.40ch12:5754505..5759974- go_terms:GO:0016020 functional_description:"Cellulose synthase (AHRD V1 ***- Q2HT16_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00037387g0001.1 protein AED:0.24 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|255578202|ref|XP_002529969.1| (e_value=4e-74) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01180.1 (e_value=1e-74) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:75633-76556 FORWARD LENGTH=307;; (*ITAG) Solyc01g096380.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79228626-79229570 transcript_region:SL2.40ch01:79228626..79229570- functional_description:"Unknown Protein (AHRD V1)"; NbS00002328g0004.1 protein AED:0.21 eAED:0.22 QI:569|1|0.5|1|0|0.5|2|0|178; (*GB) gi|296086113|emb|CBI31554.3| (e_value=1e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G05830.1 (e_value=2e-64) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc09g011770.2.1 (e_value=1e-59) genomic_reference:SL2.40ch09 gene_region:5061936-5065593 transcript_region:SL2.40ch09:5061936..5065593- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00017980g0006.1 protein AED:0.30 eAED:0.31 QI:133|1|0.66|1|1|1|6|0|437; (*GB) gi|225423879|ref|XP_002281522.1| (e_value=0.0) PREDICTED: NAC domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=1e-179) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT1G25580.1 (e_value=0.0) | Symbols: SOG1, ANAC008 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:8997064-8999600 REVERSE LENGTH=449;; (*ITAG) Solyc05g009840.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4058802-4063872 transcript_region:SL2.40ch05:4058802..4063872- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00049985g0001.1 protein AED:0.05 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|488; (*GB) gi|225445078|ref|XP_002280364.1| (e_value=0.0) PREDICTED: multidrug and toxin extrusion protein 1-like [Vitis vinifera];; (*SWP) sp|Q5RFD2|S47A1_PONAB (e_value=1e-69) Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1;; (*TAIR) AT4G29140.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr4:14369148-14370746 FORWARD LENGTH=532;; (*ITAG) Solyc04g076950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59485478-59487628 transcript_region:SL2.40ch04:59485478..59487628- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00013890g0009.1 protein AED:0.07 eAED:0.07 QI:151|0.88|0.9|1|0.88|0.8|10|302|436; (*GB) gi|356559093|ref|XP_003547836.1| (e_value=0.0) PREDICTED: COBW domain-containing protein 2-like [Glycine max];; (*SWP) sp|Q99MB4|CBWD1_RAT (e_value=6e-57) COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2;; (*TAIR) AT1G80480.1 (e_value=2e-143) | Symbols: PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH=444;; (*ITAG) Solyc08g076020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57238920-57248321 transcript_region:SL2.40ch08:57238920..57248321- functional_description:"Cobalamin synthesis protein/Pfamily protein (AHRD V1 *-*- D9WGV6_STRHY); contains Interpro domain(s) IPR003495 Cobalamin (vitamin B12) biosynthesis CobW-like "; NbS00013890g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.92|0.85|0.92|0.84|0.88|27|0|1200; (*GB) gi|225454832|ref|XP_002275116.1| (e_value=0.0) PREDICTED: protein TOPLESS [Vitis vinifera];; (*SWP) sp|Q94AI7|TPL_ARATH (e_value=0.0) Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1;; (*TAIR) AT1G15750.4 (e_value=0.0) | Symbols: WSIP1, TPL | Transducin family protein / WD-40 repeat family protein | chr1:5415086-5420359 REVERSE LENGTH=1131;; (*ITAG) Solyc08g076030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57249958-57263604 transcript_region:SL2.40ch08:57249958..57263604- go_terms:GO:0042803,GO:0016564 functional_description:"WD-40 repeat protein (AHRD V1 *--- C7RS72_ACCPU); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00009094g0004.1 protein AED:0.00 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|229914874|gb|ACQ90599.1| (e_value=2e-49) putative NADH dehydrogenase [Eutrema halophilum];; (*SWP) sp|Q9SKC9|NDUB7_ARATH (e_value=1e-45) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=2 SV=1;; (*TAIR) AT2G02050.1 (e_value=1e-46) | Symbols: | NADH-ubiquinone oxidoreductase B18 subunit, putative | chr2:490024-490335 FORWARD LENGTH=103;; (*ITAG) Solyc04g008490.1.1 (e_value=9e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2117997-2118299 transcript_region:SL2.40ch04:2117997..2118299- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB7_DICDI); contains Interpro domain(s) IPR008698 NADH:ubiquinone oxidoreductase, B18 subunit "; GO:0008137 NbS00009094g0011.1 protein AED:0.31 eAED:0.31 QI:141|1|0.83|1|0.8|1|6|240|360; (*GB) gi|224095364|ref|XP_002310382.1| (e_value=6e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4LDF9|OEP37_PEA (e_value=7e-146) Outer envelope pore protein 37, chloroplastic OS=Pisum sativum GN=OEP37 PE=1 SV=1;; (*TAIR) AT2G43950.1 (e_value=5e-138) | Symbols: OEP37, ATOEP37 | chloroplast outer envelope protein 37 | chr2:18200553-18202644 REVERSE LENGTH=343;; (*ITAG) Solyc04g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2142947-2150143 transcript_region:SL2.40ch04:2142947..2150143- go_terms:GO:0005216 functional_description:"Outer envelope protein (AHRD V1 ***- Q4LDF9_PEA)"; GO:0005216 NbS00009094g0012.1 protein AED:0.19 eAED:0.19 QI:196|1|0.9|1|1|1|10|327|455; (*GB) gi|359473684|ref|XP_003631347.1| (e_value=0.0) PREDICTED: UBX domain-containing protein 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q5REY7|UBXN7_PONAB (e_value=2e-39) UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2;; (*TAIR) AT1G14570.1 (e_value=1e-170) | Symbols: | UBX domain-containing protein | chr1:4983770-4987192 FORWARD LENGTH=468;; (*ITAG) Solyc04g008510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2133538-2142268 transcript_region:SL2.40ch04:2133538..2142268+ functional_description:"UBX domain-containing protein (AHRD V1 ***- D7KBM2_ARALY); contains Interpro domain(s) IPR006577 UAS "; NbS00036583g0005.1 protein AED:0.17 eAED:0.17 QI:132|0.87|0.88|1|0.87|1|9|0|474; (*GB) gi|328461717|gb|AEB15968.1| (e_value=0.0) ABA 8'-hydroxylase CYPA4 variant 1 [Solanum tuberosum];; (*SWP) sp|Q9LJK2|ABAH4_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4 PE=2 SV=2;; (*TAIR) AT3G19270.1 (e_value=0.0) | Symbols: CYP707A4 | cytochrome P450, family 707, subfamily A, polypeptide 4 | chr3:6673885-6676400 REVERSE LENGTH=468;; (*ITAG) Solyc01g108210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87331575-87335081 transcript_region:SL2.40ch01:87331575..87335081+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00029820g0003.1 protein AED:0.15 eAED:0.15 QI:150|0.88|0.9|1|1|1|10|585|467; (*GB) gi|359479254|ref|XP_002276436.2| (e_value=8e-173) PREDICTED: crt homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9GSB0|CRTP1_DICDI (e_value=4e-16) Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1;; (*TAIR) AT5G12170.2 (e_value=4e-144) | Symbols: CLT3 | CRT (chloroquine-resistance transporter)-like transporter 3 | chr5:3931649-3934961 FORWARD LENGTH=452;; (*ITAG) Solyc12g099810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65140093-65148741 transcript_region:SL2.40ch12:65140093..65148741- functional_description:"Crt homolog 1 (AHRD V1 **-- CRTP1_DICDI)"; NbS00009691g0004.1 protein AED:0.13 eAED:0.13 QI:358|1|0.83|1|1|1|6|0|400; (*GB) gi|126013404|gb|ABN69037.1| (e_value=0.0) protein kinase [Solanum tuberosum];; (*SWP) sp|P43293|NAK_ARATH (e_value=0.0) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2;; (*TAIR) AT5G02290.2 (e_value=0.0) | Symbols: NAK | Protein kinase superfamily protein | chr5:470387-472397 REVERSE LENGTH=389;; (*ITAG) Solyc09g010850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4169558-4172534 transcript_region:SL2.40ch09:4169558..4172534+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013453g0004.1 protein AED:0.32 eAED:0.32 QI:156|1|1|1|0|0.1|10|981|148; (*GB) gi|255581995|ref|XP_002531795.1| (e_value=4e-57) serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q0CLX3|ATG1_ASPTN (e_value=5e-22) Serine/threonine-protein kinase atg1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg1 PE=3 SV=1;; (*TAIR) AT3G61960.2 (e_value=5e-36) | Symbols: | Protein kinase superfamily protein | chr3:22941966-22944996 REVERSE LENGTH=584;; (*ITAG) Solyc11g005660.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:489523-493211 transcript_region:SL2.40ch11:489523..493211- go_terms:GO:0035175 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 **** Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00000070g0002.1 protein AED:0.53 eAED:0.62 QI:0|0|0|0.5|1|1|6|0|193; (*ITAG) Solyc08g041950.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:28281334-28284708 transcript_region:SL2.40ch08:28281334..28284708- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00000070g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.72|1|0.8|1|11|442|354; (*GB) gi|296086092|emb|CBI31533.3| (e_value=3e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=8e-52) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=8e-138) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=3e-176) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00000070g0005.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.33|1|1|3|0|98 NbS00050732g0011.1 protein AED:0.17 eAED:0.17 QI:9|1|0.66|1|1|1|6|0|334; (*GB) gi|224108772|ref|XP_002314963.1| (e_value=4e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54C25|GPN1_DICDI (e_value=3e-119) GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1;; (*TAIR) AT4G21800.2 (e_value=2e-167) | Symbols: QQT2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:11573289-11574976 FORWARD LENGTH=379;; (*ITAG) Solyc08g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61560558-61563359 transcript_region:SL2.40ch08:61560558..61563359+ go_terms:GO:0005515 functional_description:"GPN-loop GTPase 1 (AHRD V1 **-- Q4VAB2_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515 NbS00050732g0012.1 protein AED:0.29 eAED:0.29 QI:216|0.85|0.81|0.95|0.90|0.86|22|0|815; (*GB) gi|225426192|ref|XP_002273444.1| (e_value=0.0) PREDICTED: DNA repair helicase XPB1-like [Vitis vinifera];; (*SWP) sp|Q38861|XPB1_ARATH (e_value=0.0) DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3;; (*TAIR) AT5G41370.1 (e_value=0.0) | Symbols: XPB1, ATXPB1 | homolog of xeroderma pigmentosum complementation group B 1 | chr5:16551337-16555792 FORWARD LENGTH=767;; (*ITAG) Solyc08g081340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61564279-61573863 transcript_region:SL2.40ch08:61564279..61573863+ go_terms:GO:0043140 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** C8NNJ3_COREF); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B) "; GO:0043140 NbS00031791g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|95; (*ITAG) Solyc01g066730.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:67285028-67286366 transcript_region:SL2.40ch01:67285028..67286366+ go_terms:GO:0005634 functional_description:"MADS-box protein (AHRD V1 *-*- D7KFE1_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00031791g0023.1 protein AED:0.08 eAED:0.09 QI:0|0.93|0.94|1|0.75|0.70|17|43|1335; (*GB) gi|359477261|ref|XP_002269707.2| (e_value=0.0) PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis vinifera];; (*SWP) sp|C6L7U1|LIN1_LOTJA (e_value=6e-76) Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2;; (*TAIR) AT3G06880.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264;; (*ITAG) Solyc01g066740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67286174-67294487 transcript_region:SL2.40ch01:67286174..67294487- go_terms:GO:0000166 functional_description:"Transducin family protein (Fragment) (AHRD V1 *--- D7L607_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00031791g0021.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.71|1|0.83|0.57|7|0|315; (*GB) gi|15227109|ref|NP_182287.1| (e_value=0.0) UDP-xylose synthase 4 [Arabidopsis thaliana];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=1e-123) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT2G47650.1 (e_value=0.0) | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:19538751-19541364 REVERSE LENGTH=443;; (*ITAG) Solyc12g099480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64957950-64961604 transcript_region:SL2.40ch12:64957950..64961604+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_PHOLL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00031791g0022.1 protein AED:0.36 eAED:0.41 QI:149|0|0.5|1|1|1|4|538|96 NbS00031791g0019.1 protein AED:0.41 eAED:0.62 QI:0|0|0|1|0|0|2|0|79; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-16) hypothetical protein [Nicotiana tabacum]; NbS00050684g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.6|1|1|1|5|60|505; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00023806g0001.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.42|1|1|7|0|455; (*ITAG) Solyc04g018260.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11187511-11188311 transcript_region:SL2.40ch04:11187511..11188311+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029250g0004.1 protein AED:0.18 eAED:0.18 QI:46|1|0.85|1|1|0.85|7|0|658; (*GB) gi|225424845|ref|XP_002268603.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 19 [Vitis vinifera];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc05g006680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1357171-1361457 transcript_region:SL2.40ch05:1357171..1361457+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00006258g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|1047; (*GB) gi|225466101|ref|XP_002265750.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-62) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT4G13920.1 (e_value=5e-75) | Symbols: AtRLP50, RLP50 | receptor like protein 50 | chr4:8043861-8046536 FORWARD LENGTH=891;; (*ITAG) Solyc01g087510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74215693-74218969 transcript_region:SL2.40ch01:74215693..74218969- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00006258g0013.1 protein AED:0.21 eAED:0.21 QI:0|0.90|0.91|1|1|1|12|511|579; (*GB) gi|359476248|ref|XP_002279909.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Vitis vinifera];; (*SWP) sp|Q96MW5|COG8_HUMAN (e_value=5e-93) Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens GN=COG8 PE=1 SV=2;; (*TAIR) AT5G11980.1 (e_value=0.0) | Symbols: | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:3868809-3872146 REVERSE LENGTH=569;; (*ITAG) Solyc01g087650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74351775-74359297 transcript_region:SL2.40ch01:74351775..74359297+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 8 (AHRD V1 ***- COG8_MOUSE); contains Interpro domain(s) IPR016632 Conserved oligomeric Golgi complex, subunit 8 "; GO:0005515 NbS00006258g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|299; (*ITAG) Solyc01g086790.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:73498509-73498925 transcript_region:SL2.40ch01:73498509..73498925+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006258g0016.1 protein AED:0.31 eAED:0.31 QI:131|0.63|0.5|1|0.72|0.75|12|181|592; (*GB) gi|255553468|ref|XP_002517775.1| (e_value=0.0) cinnamoyl-CoA reductase, putative [Ricinus communis];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=4e-54) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT5G19440.1 (e_value=1e-116) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326;; (*ITAG) Solyc01g087640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74345022-74349166 transcript_region:SL2.40ch01:74345022..74349166- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- A9PFK4_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00018331g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|90900942|gb|ABE01833.1| (e_value=3e-153) CK25 [Nicotiana tabacum];; (*ITAG) Solyc07g054560.1.1 (e_value=1e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60167225-60168091 transcript_region:SL2.40ch07:60167225..60168091+ functional_description:"CK25 (AHRD V1 ***- Q1W1G0_TOBAC)"; NbS00018331g0008.1 protein AED:0.28 eAED:0.28 QI:370|0.66|0.75|1|1|1|4|658|273; (*GB) gi|356543805|ref|XP_003540350.1| (e_value=4e-169) PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max];; (*SWP) sp|Q3LSN5|LIAS2_PEA (e_value=9e-169) Lipoyl synthase 2, mitochondrial OS=Pisum sativum GN=LIP1-2 PE=2 SV=1;; (*TAIR) AT2G20860.1 (e_value=5e-165) | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979636-8980983 FORWARD LENGTH=374;; (*ITAG) Solyc07g054540.2.1 (e_value=3e-177) genomic_reference:SL2.40ch07 gene_region:60156209-60161037 transcript_region:SL2.40ch07:60156209..60161037+ go_terms:GO:0017140 functional_description:"Lipoyl synthase (AHRD V1 **** B8J937_ANAD2); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0017140 NbS00022908g0004.1 protein AED:0.23 eAED:0.25 QI:353|0.44|0.3|1|1|1|10|0|855; (*GB) gi|225451503|ref|XP_002272024.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera];; (*SWP) sp|Q9FMU2|PP380_ARATH (e_value=3e-148) Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2;; (*TAIR) AT3G01990.1 (e_value=1e-154) | Symbols: ACR6 | ACT domain repeat 6 | chr3:330256-332066 FORWARD LENGTH=433;; (*ITAG) Solyc02g094310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49453107-49455165 transcript_region:SL2.40ch02:49453107..49455165+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M5Z8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00045000g0001.1 protein AED:0.17 eAED:0.18 QI:233|0.71|0.87|1|1|1|8|410|252; (*GB) gi|225463119|ref|XP_002265135.1| (e_value=3e-136) PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera];; (*SWP) sp|Q9M9G7|CAPZB_ARATH (e_value=1e-130) Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=2 SV=1;; (*TAIR) AT1G71790.1 (e_value=8e-132) | Symbols: | Subunits of heterodimeric actin filament capping protein Capz superfamily | chr1:26996869-26998785 FORWARD LENGTH=256;; (*ITAG) Solyc12g056770.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48211261-48217095 transcript_region:SL2.40ch12:48211261..48217095+ go_terms:GO:0008290 functional_description:"F-actin capping protein beta subunit family protein (AHRD V1 ***- D7KYY1_ARALY); contains Interpro domain(s) IPR001698 F-actin capping protein, beta subunit "; GO:0008290 NbS00021147g0003.1 protein AED:0.03 eAED:0.03 QI:112|1|1|1|0.5|0.66|3|255|354; (*GB) gi|147771160|emb|CAN76442.1| (e_value=4e-174) hypothetical protein VITISV_032921 [Vitis vinifera];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=1e-45) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT3G19000.1 (e_value=3e-136) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6553668-6554987 REVERSE LENGTH=352;; (*ITAG) Solyc01g108880.2.1 (e_value=7e-167) genomic_reference:SL2.40ch01 gene_region:87786634-87788179 transcript_region:SL2.40ch01:87786634..87788179- go_terms:GO:0045431,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431,GO:0009815 NbS00037138g0005.1 protein AED:0.29 eAED:0.35 QI:0|0.63|0.58|0.83|1|1|12|0|440; (*GB) gi|225445067|ref|XP_002280299.1| (e_value=0.0) PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|Q8KPU9|SYR_SYNE7 (e_value=6e-121) Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2;; (*TAIR) AT4G26300.1 (e_value=0.0) | Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642;; (*ITAG) Solyc12g008570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1956456-1966721 transcript_region:SL2.40ch12:1956456..1966721+ go_terms:GO:0006420,GO:0005737 functional_description:"Arginyl-tRNA synthetase (AHRD V1 ***- O23247_ARATH); contains Interpro domain(s) IPR001278 Arginyl-tRNA synthetase, class Ic "; GO:0006420,GO:0005737 NbS00008668g0005.1 protein AED:0.02 eAED:0.02 QI:212|0.5|0.66|1|0|0.33|3|355|342; (*GB) gi|283132365|dbj|BAI63588.1| (e_value=1e-133) leucine rich repeat protein [Lotus japonicus];; (*SWP) sp|Q9V780|LAP1_DROME (e_value=6e-22) Protein lap1 OS=Drosophila melanogaster GN=Lap1 PE=2 SV=1;; (*TAIR) AT2G19330.1 (e_value=2e-119) | Symbols: PIRL6 | plant intracellular ras group-related LRR 6 | chr2:8372947-8374453 FORWARD LENGTH=380;; (*ITAG) Solyc12g017480.1.1 (e_value=6e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6759518-6763974 transcript_region:SL2.40ch12:6759518..6763974+ go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00045833g0001.1 protein AED:0.22 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|339|249; (*ITAG) Solyc08g005030.1.1 (e_value=2e-86) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:27665-28315 transcript_region:SL2.40ch08:27665..28315+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045833g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|3|0|218; (*GB) gi|116617152|ref|YP_817527.1| (e_value=5e-108) NADH-plastoquinone oxidoreductase subunit 2 [Coffea arabica];; (*SWP) sp|P0CC48|NU2C1_COFAR (e_value=1e-109) NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=1e-65) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc09g061460.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54753885-54754777 transcript_region:SL2.40ch09:54753885..54754777+ go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D2KLR3_OLEEU); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00046623g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|674; (*GB) gi|225461808|ref|XP_002285634.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc07g062130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62160950-62163332 transcript_region:SL2.40ch07:62160950..62163332+ go_terms:GO:0050377,GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-** B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050377,GO:0010280 NbS00046623g0018.1 protein AED:0.10 eAED:0.11 QI:0|0.75|0.8|1|0.5|0.2|5|406|394; (*GB) gi|147838103|emb|CAN60929.1| (e_value=3e-92) hypothetical protein VITISV_008358 [Vitis vinifera];; (*TAIR) AT1G53460.1 (e_value=1e-69) | Symbols: | BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). | chr1:19954558-19956509 REVERSE LENGTH=314;; (*ITAG) Solyc10g007440.2.1 (e_value=2e-164) genomic_reference:SL2.40ch10 gene_region:1803609-1807729 transcript_region:SL2.40ch10:1803609..1807729+ functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 *--- D7KYC9_ARALY)"; NbS00046623g0017.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.8|1|0.75|0.6|5|220|347; (*GB) gi|302142821|emb|CBI20116.3| (e_value=1e-141) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G78710.1 (e_value=5e-133) | Symbols: TBL42 | TRICHOME BIREFRINGENCE-LIKE 42 | chr1:29602708-29604557 FORWARD LENGTH=359;; (*ITAG) Solyc12g044450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44875217-44878764 transcript_region:SL2.40ch12:44875217..44878764+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00046623g0016.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|312; (*GB) gi|302142813|emb|CBI20108.3| (e_value=4e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=3e-27) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=2e-37) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc10g007470.2.1 (e_value=1e-138) genomic_reference:SL2.40ch10 gene_region:1820475-1822987 transcript_region:SL2.40ch10:1820475..1822987+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00048878g0012.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|359; (*GB) gi|255566791|ref|XP_002524379.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g078530.1.1 (e_value=3e-170) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:44621923-44623158 transcript_region:SL2.40ch03:44621923..44623158+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048878g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.81|0.83|1|0.81|0.75|12|58|753; (*GB) gi|193290650|gb|ACF17633.1| (e_value=0.0) putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Capsicum annuum];; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=0.0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=0.0) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc09g013080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5484876-5491347 transcript_region:SL2.40ch09:5484876..5491347- go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- B7KJL9_CYAP7); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00048878g0016.1 protein AED:0.35 eAED:0.38 QI:0|0|0|0.5|0|0.5|2|0|182; (*GB) gi|224127900|ref|XP_002329205.1| (e_value=3e-32) hypothetical protein POPTRDRAFT_266879 [Populus trichocarpa];; (*TAIR) AT2G40770.1 (e_value=9e-24) | Symbols: | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding | chr2:17013535-17021315 REVERSE LENGTH=1664;; (*ITAG) Solyc03g095690.2.1 (e_value=4e-41) genomic_reference:SL2.40ch03 gene_region:50329554-50335009 transcript_region:SL2.40ch03:50329554..50335009+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--- CHD3_DROME); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00051340g0001.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|60 NbS00011178g0009.1 protein AED:0.37 eAED:0.41 QI:0|0.62|0.55|1|0.5|0.55|9|0|519; (*GB) gi|224067156|ref|XP_002302383.1| (e_value=2e-164) amino acid transporter [Populus trichocarpa];; (*SWP) sp|P40074|AVT6_YEAST (e_value=3e-22) Vacuolar amino acid transporter 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT6 PE=1 SV=1;; (*TAIR) AT3G30390.2 (e_value=4e-137) | Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460;; (*ITAG) Solyc04g077460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59962577-59967364 transcript_region:SL2.40ch04:59962577..59967364+ go_terms:GO:0015186 functional_description:"Amino acid transporter (AHRD V1 **** B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015186 NbS00029506g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|224088996|ref|XP_002308594.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32870.1 (e_value=2e-37) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:15862168-15862641 FORWARD LENGTH=157;; (*ITAG) Solyc08g066430.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52277048-52277563 transcript_region:SL2.40ch08:52277048..52277563+ functional_description:"Lachrymatory factor synthase (AHRD V1 ***- B6TW34_MAIZE); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00058355g0010.1 protein AED:0.29 eAED:0.31 QI:0|0.85|0.75|1|1|1|8|457|391; (*GB) gi|225441702|ref|XP_002282897.1| (e_value=7e-99) PREDICTED: transcription factor bHLH60 [Vitis vinifera];; (*SWP) sp|Q8VZ02|BH048_ARATH (e_value=1e-60) Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1;; (*TAIR) AT3G57800.2 (e_value=3e-61) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21408034-21411321 REVERSE LENGTH=379;; (*ITAG) Solyc10g079070.1.1 (e_value=1e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60025990-60030733 transcript_region:SL2.40ch10:60025990..60030733+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00058355g0002.1 protein AED:0.23 eAED:0.23 QI:260|1|0.66|1|0|0.33|3|0|172; (*GB) gi|222822685|gb|ACM68455.1| (e_value=3e-114) stress-associated protein 5 [Solanum pennellii];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=2e-78) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=1e-52) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc10g079080.1.1 (e_value=2e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60031853-60032371 transcript_region:SL2.40ch10:60031853..60032371- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00002917g0001.1 protein AED:0.21 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|425; (*GB) gi|225434879|ref|XP_002283212.1| (e_value=1e-87) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=3e-34) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT5G59550.1 (e_value=3e-65) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:23998422-23999645 REVERSE LENGTH=407;; (*ITAG) Solyc04g011610.1.1 (e_value=3e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00007793g0002.1 protein AED:0.09 eAED:0.27 QI:0|0|0|1|0|0|3|0|203; (*GB) gi|224145547|ref|XP_002325681.1| (e_value=6e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g005640.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:338253-339740 transcript_region:SL2.40ch12:338253..339740- go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00007793g0001.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|0|0|2|0|67; (*ITAG) Solyc09g059680.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00043135g0005.1 protein AED:0.20 eAED:0.22 QI:0|0.66|0.5|1|0.33|0.5|4|0|513; (*GB) gi|225463801|ref|XP_002270400.1| (e_value=0.0) PREDICTED: pyruvate kinase, cytosolic isozyme isoform 1 [Vitis vinifera];; (*SWP) sp|Q42806|KPYC_SOYBN (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00009536g0002.1 protein AED:0.02 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|111; (*ITAG) Solyc10g081690.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62030018-62031028 transcript_region:SL2.40ch10:62030018..62031028- functional_description:"Unknown Protein (AHRD V1)"; NbS00024751g0006.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.85|0.5|0.28|7|0|496; (*GB) gi|108864705|gb|ABG22608.1| (e_value=0.0) Heat shock cognate 70 kDa protein, putative, expressed [Oryza sativa Japonica Group];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00024751g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|0.5|0.66|3|345|123; (*GB) gi|356524998|ref|XP_003531114.1| (e_value=7e-36) PREDICTED: uncharacterized protein LOC100499760 [Glycine max];; (*TAIR) AT1G47278.2 (e_value=3e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:17331263-17331726 FORWARD LENGTH=91;; (*ITAG) Solyc11g066070.1.1 (e_value=5e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48827458-48827700 transcript_region:SL2.40ch11:48827458..48827700- functional_description:"Unknown Protein (AHRD V1)"; NbS00046129g0005.1 protein AED:0.08 eAED:0.08 QI:131|0.87|0.88|1|0.62|0.66|9|515|288; (*GB) gi|359486627|ref|XP_002278627.2| (e_value=1e-128) PREDICTED: uncharacterized protein LOC100263308 [Vitis vinifera];; (*TAIR) AT3G04020.1 (e_value=2e-94) | Symbols: | unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:1040548-1042377 FORWARD LENGTH=304;; (*ITAG) Solyc06g043070.2.1 (e_value=2e-122) genomic_reference:SL2.40ch06 gene_region:25999771-26005144 transcript_region:SL2.40ch06:25999771..26005144+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021604g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|282; (*GB) gi|147775392|emb|CAN73683.1| (e_value=7e-118) hypothetical protein VITISV_016120 [Vitis vinifera];; (*TAIR) AT5G15900.1 (e_value=2e-93) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00021604g0005.1 protein AED:0.32 eAED:0.44 QI:41|0|0|0.5|0.33|0.4|10|0|314; (*GB) gi|10798640|emb|CAC12820.1| (e_value=6e-50) mitochondrial 2-oxoglutarate/malate carrier protein [Nicotiana tabacum];; (*TAIR) AT5G19760.1 (e_value=6e-43) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00007990g0016.1 protein AED:0.00 eAED:0.00 QI:127|1|1|1|1|1|3|422|873; (*GB) gi|147771901|emb|CAN75706.1| (e_value=1e-100) hypothetical protein VITISV_031419 [Vitis vinifera];; (*SWP) sp|O14360|NAF1_SCHPO (e_value=1e-14) H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=naf1 PE=1 SV=1;; (*TAIR) AT1G03530.1 (e_value=3e-78) | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 | chr1:880638-883338 REVERSE LENGTH=801;; (*ITAG) Solyc07g054460.2.1 (e_value=7e-158) genomic_reference:SL2.40ch07 gene_region:60098069-60102926 transcript_region:SL2.40ch07:60098069..60102926- functional_description:"H/ACA ribonucleoprotein complex non-core subunit NAF1 (AHRD V1 *-*- NAF1_HUMAN); contains Interpro domain(s) IPR008696 NAF1 "; NbS00007990g0009.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|1|1|2|0|99; (*GB) gi|41469311|gb|AAS07167.1| (e_value=3e-17) expressed protein [Oryza sativa Japonica Group];; (*ITAG) Solyc07g054430.2.1 (e_value=3e-28) genomic_reference:SL2.40ch07 gene_region:60069440-60072054 transcript_region:SL2.40ch07:60069440..60072054+ go_terms:GO:0030412,GO:0030409 functional_description:"Glutamate formiminotransferase (AHRD V1 **** B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0030412,GO:0030409 NbS00007990g0022.1 protein AED:0.13 eAED:0.16 QI:0|0.33|0|0.75|1|0.75|4|0|235; (*GB) gi|224126749|ref|XP_002319917.1| (e_value=8e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZA8|ULT1_ARATH (e_value=6e-93) Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1;; (*TAIR) AT4G28190.1 (e_value=5e-94) | Symbols: ULT1, ULT | Developmental regulator, ULTRAPETALA | chr4:13985753-13987050 FORWARD LENGTH=237;; (*ITAG) Solyc07g054450.2.1 (e_value=2e-105) genomic_reference:SL2.40ch07 gene_region:60092916-60096795 transcript_region:SL2.40ch07:60092916..60096795+ go_terms:GO:0005634 functional_description:"Transcription factor (Fragment) (AHRD V1 ***- D6MKF6_9ASPA); contains Interpro domain(s) IPR000770 SAND "; GO:0005634 NbS00007990g0017.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|263; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00007990g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|202; (*ITAG) Solyc12g010880.1.1 (e_value=8e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3791120-3791812 transcript_region:SL2.40ch12:3791120..3791812- go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007990g0014.1 protein AED:0.52 eAED:0.76 QI:0|0|0|0.75|1|1|4|0|176; (*GB) gi|157283575|gb|ABV30814.1| (e_value=4e-23) NBS-containing resistance-like protein [Platanus x acerifolia];; (*ITAG) Solyc12g005530.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:299429-299713 transcript_region:SL2.40ch12:299429..299713+ go_terms:GO:0006915 functional_description:"Nbs, resistance protein fragment"; GO:0006915 NbS00007990g0011.1 protein AED:0.51 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|96 NbS00007990g0020.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|68 NbS00010411g0002.1 protein AED:0.23 eAED:0.23 QI:41|1|1|1|0.2|0.33|6|1226|176; (*GB) gi|350535120|ref|NP_001234177.1| (e_value=2e-87) auxin efflux facilitator SlPIN3 [Solanum lycopersicum];; (*SWP) sp|Q9S7Z8|PIN3_ARATH (e_value=5e-67) Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1;; (*TAIR) AT1G70940.1 (e_value=4e-68) | Symbols: PIN3, ATPIN3 | Auxin efflux carrier family protein | chr1:26743170-26745871 FORWARD LENGTH=640;; (*ITAG) Solyc04g007690.2.1 (e_value=7e-90) genomic_reference:SL2.40ch04 gene_region:1374090-1377203 transcript_region:SL2.40ch04:1374090..1377203- go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier (AHRD V1 **** D6RT11_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00003562g0007.1 protein AED:0.14 eAED:0.20 QI:128|0.33|0.42|1|0.33|0.57|7|0|629; (*GB) gi|16610191|emb|CAD10638.1| (e_value=0.0) PBF68 protein [Nicotiana tabacum];; (*SWP) sp|O65155|KELP_ARATH (e_value=1e-23) RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1;; (*TAIR) AT4G00980.1 (e_value=4e-43) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:422732-424580 REVERSE LENGTH=488;; (*ITAG) Solyc08g082580.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:62481272-62484580 transcript_region:SL2.40ch08:62481272..62484580+ go_terms:GO:0030528,GO:0005515 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 *-*- B9EM37_SALSA); contains Interpro domain(s) IPR017415 RNA polymerase II transcriptional coactivator KELP "; GO:0030528,GO:0005515 NbS00003562g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|603; (*GB) gi|225470922|ref|XP_002264409.1| (e_value=0.0) PREDICTED: transcription factor bHLH13 [Vitis vinifera];; (*SWP) sp|Q9LNJ5|BH013_ARATH (e_value=6e-169) Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1;; (*TAIR) AT1G01260.3 (e_value=5e-170) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590;; (*ITAG) Solyc05g050560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:59857180-59858919 transcript_region:SL2.40ch05:59857180..59858919+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00003562g0118.1 protein AED:0.10 eAED:0.10 QI:33|0.8|0.66|1|0.8|0.66|6|91|549 NbS00003562g0115.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|372 NbS00003562g0124.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|504 NbS00003562g0126.1 protein AED:0.09 eAED:0.09 QI:0|0.55|0.5|1|0.33|0.4|10|0|738 NbS00003562g0123.1 protein AED:0.12 eAED:0.12 QI:123|0.8|1|1|0.6|0.83|6|259|187 NbS00003562g0125.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|107 NbS00055545g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|15224494|ref|NP_181370.1| (e_value=2e-77) PRA1 family protein B4 [Arabidopsis thaliana];; (*SWP) sp|O80915|PR1B4_ARATH (e_value=5e-79) PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1;; (*TAIR) AT2G38360.1 (e_value=4e-80) | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 | chr2:16069840-16070502 REVERSE LENGTH=220;; (*ITAG) Solyc10g076360.1.1 (e_value=5e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58654946-58655620 transcript_region:SL2.40ch10:58654946..58655620+ functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00032119g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|332322086|emb|CCA65978.1| (e_value=6e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc04g045260.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:31171275-31174232 transcript_region:SL2.40ch04:31171275..31174232+ functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00036674g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.66|1|4|478|256; (*GB) gi|224105935|ref|XP_002313984.1| (e_value=1e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|P92985|RBP1C_ARATH (e_value=6e-88) Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1;; (*TAIR) AT5G58590.1 (e_value=5e-89) | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680319-23681714 REVERSE LENGTH=219;; (*ITAG) Solyc06g082120.2.1 (e_value=3e-100) genomic_reference:SL2.40ch06 gene_region:44333171-44336113 transcript_region:SL2.40ch06:44333171..44336113+ go_terms:GO:0008536 functional_description:"Ran GTPase binding protein (AHRD V1 **** C4R913_PICPG); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0008536 NbS00036674g0013.1 protein AED:0.14 eAED:0.17 QI:0|0.5|0.4|1|0.5|0.4|5|0|1730; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00036674g0004.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|1|1|2|0|483; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=2e-175) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00002577g0005.1 protein AED:0.32 eAED:0.40 QI:0|0|0|1|0.5|0.66|3|0|110; (*GB) gi|47457588|emb|CAG29169.1| (e_value=2e-36) Rme-8 homologue [Nicotiana tabacum];; (*TAIR) AT2G26890.1 (e_value=7e-18) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=4e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00002295g0012.1 protein AED:0.17 eAED:0.17 QI:21|0|0.25|1|0|0.25|4|403|637; (*GB) gi|225462201|ref|XP_002269984.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic [Vitis vinifera];; (*SWP) sp|A3KPF8|PP131_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1;; (*TAIR) AT1G79080.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29747102-29748832 REVERSE LENGTH=576;; (*ITAG) Solyc07g066390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65059324-65061057 transcript_region:SL2.40ch07:65059324..65061057- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVY0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00002295g0011.1 protein AED:0.18 eAED:0.18 QI:234|0.86|0.87|0.93|0.73|0.75|16|1446|545; (*GB) gi|255585028|ref|XP_002533224.1| (e_value=0.0) wd40 protein, putative [Ricinus communis];; (*SWP) sp|Q6DFC6|WDR75_XENLA (e_value=5e-27) WD repeat-containing protein 75 OS=Xenopus laevis GN=wdr75 PE=2 SV=1;; (*TAIR) AT2G18900.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8188491-8192409 REVERSE LENGTH=804;; (*ITAG) Solyc07g066410.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65063199-65073697 transcript_region:SL2.40ch07:65063199..65073697- functional_description:"WD repeat protein (AHRD V1 ***- B6QUX1_PENMQ); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002295g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|297738144|emb|CBI27345.3| (e_value=8e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G12960.1 (e_value=8e-21) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4136546-4136806 FORWARD LENGTH=86;; (*ITAG) Solyc07g066400.1.1 (e_value=1e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:65062293-65062697 transcript_region:SL2.40ch07:65062293..65062697+ functional_description:"Seed maturation protein (AHRD V1 *-*- Q2XSI1_9FABA)"; NbS00061213g0008.1 protein AED:0.09 eAED:0.09 QI:600|0.75|0.6|1|0.75|0.6|5|0|620; (*GB) gi|255545116|ref|XP_002513619.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FLV4|Y5248_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1;; (*TAIR) AT5G24080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:8139334-8141014 REVERSE LENGTH=470;; (*ITAG) Solyc03g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2343464-2347272 transcript_region:SL2.40ch03:2343464..2347272+ go_terms:GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00061213g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.58|0.69|1|1|1|13|470|1500; (*GB) gi|356534063|ref|XP_003535577.1| (e_value=0.0) PREDICTED: ABC transporter C family member 10-like, partial [Glycine max];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc06g036490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:22794728-22799187 transcript_region:SL2.40ch06:22794728..22799187- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00020258g0025.1 protein AED:0.21 eAED:0.21 QI:286|1|1|1|0.66|0.8|10|312|359; (*GB) gi|357484065|ref|XP_003612319.1| (e_value=3e-169) Serine acetyltransferase [Medicago truncatula];; (*SWP) sp|Q10S58|SAT2_ORYSJ (e_value=2e-158) Probable serine acetyltransferase 2 OS=Oryza sativa subsp. japonica GN=SAT2 PE=2 SV=1;; (*TAIR) AT4G35640.1 (e_value=8e-157) | Symbols: ATSERAT3;2, SERAT3;2 | serine acetyltransferase 3;2 | chr4:16905755-16907977 REVERSE LENGTH=355;; (*ITAG) Solyc02g082850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41072144-41078100 transcript_region:SL2.40ch02:41072144..41078100- go_terms:GO:0009001 functional_description:"Serine O-acetyltransferase (AHRD V1 **** Q21LT3_SACD2); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00020258g0021.1 protein AED:0.23 eAED:0.24 QI:3|0.9|0.85|0.95|0.95|0.95|21|538|835; (*GB) gi|356495327|ref|XP_003516530.1| (e_value=0.0) PREDICTED: protein GRIP-like [Glycine max];; (*SWP) sp|Q8S2T0|GRIP_ARATH (e_value=0.0) Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2;; (*TAIR) AT5G66030.1 (e_value=0.0) | Symbols: ATGRIP, GRIP | Golgi-localized GRIP domain-containing protein | chr5:26405133-26409888 REVERSE LENGTH=788;; (*ITAG) Solyc02g082840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41059268-41070574 transcript_region:SL2.40ch02:41059268..41070574- go_terms:GO:0005515 functional_description:"Protein GRIP (AHRD V1 ***- GRIP_ARATH); contains Interpro domain(s) IPR000237 GRIP "; GO:0005515 NbS00020258g0022.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|590; (*GB) gi|255561377|ref|XP_002521699.1| (e_value=0.0) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc02g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41097342-41100068 transcript_region:SL2.40ch02:41097342..41100068+ go_terms:GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00020258g0029.1 protein AED:0.24 eAED:0.31 QI:0|0|0.28|1|0.33|0.57|7|189|349; (*GB) gi|3790190|emb|CAA74777.1| (e_value=0.0) NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q8LFC0|IDH1_ARATH (e_value=2e-152) Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2;; (*TAIR) AT4G35260.1 (e_value=2e-153) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367;; (*ITAG) Solyc02g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41089620-41095431 transcript_region:SL2.40ch02:41089620..41095431+ go_terms:GO:0004449,GO:0008270 functional_description:"Isocitrate dehydrogenase (AHRD V1 **** A3LYS8_PICST); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0004449,GO:0008270 NbS00020258g0030.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.75|0|0|4|0|503; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-108) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00020258g0031.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|361; (*GB) gi|359497855|ref|XP_003635671.1| (e_value=1e-132) PREDICTED: phosphoserine aminotransferase, chloroplastic-like, partial [Vitis vinifera];; (*SWP) sp|Q96255|SERC_ARATH (e_value=6e-131) Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1;; (*TAIR) AT4G35630.1 (e_value=5e-132) | Symbols: PSAT | phosphoserine aminotransferase | chr4:16904205-16905497 FORWARD LENGTH=430;; (*ITAG) Solyc02g082830.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41056853-41058151 transcript_region:SL2.40ch02:41056853..41058151+ go_terms:GO:0005515,GO:0004648 functional_description:"Phosphoserine aminotransferase (AHRD V1 **** B9H657_POPTR); contains Interpro domain(s) IPR003248 Phosphoserine aminotransferase "; GO:0005515,GO:0004648 NbS00028367g0004.1 protein AED:0.23 eAED:0.23 QI:159|1|1|1|0.92|0.92|14|323|506; (*GB) gi|294440430|gb|ADE74632.1| (e_value=0.0) aspartic protease 1 [Nicotiana tabacum];; (*SWP) sp|Q42456|ASPR1_ORYSJ (e_value=0.0) Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc01g101240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82818855-82824013 transcript_region:SL2.40ch01:82818855..82824013+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **** ASPRX_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00027725g0010.1 protein AED:0.27 eAED:0.38 QI:89|0|0.25|1|0|0|4|0|122; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=7e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00027725g0009.1 protein AED:0.15 eAED:0.16 QI:0|0.8|0.72|0.90|0.6|0.54|11|0|351; (*GB) gi|192764525|gb|ACF05806.1| (e_value=7e-105) PAE [Litchi chinensis];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=2e-25) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19420.2 (e_value=1e-106) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc08g005790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:615659-619369 transcript_region:SL2.40ch08:615659..619369+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00027725g0011.1 protein AED:0.24 eAED:0.25 QI:46|0.6|0.66|1|0.6|0.83|6|0|473; (*GB) gi|225427562|ref|XP_002266662.1| (e_value=2e-158) PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera];; (*TAIR) AT1G31410.1 (e_value=5e-141) | Symbols: | putrescine-binding periplasmic protein-related | chr1:11247094-11249345 REVERSE LENGTH=524;; (*ITAG) Solyc08g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:646066-655558 transcript_region:SL2.40ch08:646066..655558+ go_terms:GO:0030288 functional_description:"Putrescine-binding periplasmic protein (AHRD V1 *-*- A8FVZ2_SHESH); contains Interpro domain(s) IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein "; GO:0030288 NbS00004009g0001.1 protein AED:0.18 eAED:0.21 QI:143|0.83|0.85|1|0.66|0.71|7|222|648; (*GB) gi|225429462|ref|XP_002278761.1| (e_value=6e-173) PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera];; (*SWP) sp|Q91WJ8|FUBP1_MOUSE (e_value=2e-21) Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1 PE=1 SV=1;; (*TAIR) AT2G25970.1 (e_value=6e-109) | Symbols: | KH domain-containing protein | chr2:11071844-11075604 REVERSE LENGTH=632;; (*ITAG) Solyc12g095960.1.1 (e_value=3e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63401514-63405993 transcript_region:SL2.40ch12:63401514..63405993- go_terms:GO:0051010 functional_description:"Insulin-like growth factor 2 mRNA-binding protein 2 (AHRD V1 *-** IF2B2_PONAB); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051010 NbS00004009g0106.1 protein AED:0.07 eAED:0.07 QI:204|1|1|1|1|1|2|212|189 NbS00004009g0104.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.2|1|1|5|0|172 NbS00013490g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|733|315; (*GB) gi|71067056|dbj|BAE16280.1| (e_value=4e-144) NbPCL1 [Nicotiana benthamiana];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=5e-21) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G46640.2 (e_value=2e-78) | Symbols: PCL1 | Homeodomain-like superfamily protein | chr3:17183248-17184219 FORWARD LENGTH=323;; (*ITAG) Solyc06g005680.2.1 (e_value=1e-113) genomic_reference:SL2.40ch06 gene_region:748174-749366 transcript_region:SL2.40ch06:748174..749366+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00013490g0010.1 protein AED:0.21 eAED:0.21 QI:3|0.8|0.54|1|0.9|0.81|11|37|1020; (*GB) gi|225434877|ref|XP_002283191.1| (e_value=0.0) PREDICTED: pumilio homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9ZW06|PUM2_ARATH (e_value=0.0) Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1;; (*TAIR) AT2G29190.2 (e_value=0.0) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972;; (*ITAG) Solyc06g005670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:735456-743778 transcript_region:SL2.40ch06:735456..743778+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00013490g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|543; (*GB) gi|225434871|ref|XP_002280683.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Vitis vinifera];; (*SWP) sp|Q9FGR2|PP436_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1;; (*TAIR) AT5G59600.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:24011315-24012919 REVERSE LENGTH=534;; (*ITAG) Solyc06g005690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:753766-755505 transcript_region:SL2.40ch06:753766..755505- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSG6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019108g0009.1 protein AED:0.21 eAED:0.22 QI:0|0.5|0|1|1|1|3|0|454; (*GB) gi|147856803|emb|CAN79179.1| (e_value=1e-48) hypothetical protein VITISV_016730 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=7e-33) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT5G04110.1 (e_value=3e-45) | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112 REVERSE LENGTH=546;; (*ITAG) Solyc09g014170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5643932-5650838 transcript_region:SL2.40ch09:5643932..5650838- functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR000949 ELM2 "; NbS00019108g0008.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.5|1|3|0|648; (*GB) gi|225440616|ref|XP_002273894.1| (e_value=2e-178) PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SS80|U503A_ARATH (e_value=2e-77) UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1;; (*TAIR) AT2G38070.1 (e_value=3e-81) | Symbols: | Protein of unknown function (DUF740) | chr2:15928737-15930596 FORWARD LENGTH=619;; (*ITAG) Solyc09g014160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5596207-5598186 transcript_region:SL2.40ch09:5596207..5598186+ functional_description:"UPF0503 protein At3g09070, chloroplastic (AHRD V1 ***- U503A_ARATH); contains Interpro domain(s) IPR008004 Protein of unknown function DUF740 "; NbS00019108g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|220; (*GB) gi|1709761|sp|P52427.1|PSA4_SPIOL (e_value=1e-109) RecName: Full=Proteasome subunit alpha type-4; AltName: Full=20S proteasome alpha subunit C; AltName: Full=20S proteasome subunit alpha-3; AltName: Full=Proteasome 27 kDa subunit;; (*SWP) sp|P52427|PSA4_SPIOL (e_value=4e-111) Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1;; (*TAIR) AT3G22110.1 (e_value=8e-110) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=8e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00000510g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|3|695|855; (*GB) gi|225443732|ref|XP_002268174.1| (e_value=0.0) PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Vitis vinifera];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=0.0) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc02g072150.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36009721-36013800 transcript_region:SL2.40ch02:36009721..36013800- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00000510g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|507; (*GB) gi|357519091|ref|XP_003629834.1| (e_value=1e-152) hypothetical protein MTR_8g087400 [Medicago truncatula];; (*TAIR) AT1G29300.1 (e_value=4e-134) | Symbols: UNE1 | Plant protein of unknown function (DUF641) | chr1:10248120-10249499 REVERSE LENGTH=459;; (*ITAG) Solyc02g072140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36004961-36006331 transcript_region:SL2.40ch02:36004961..36006331+ functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAQ7_GOSRA); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00033373g0004.1 protein AED:0.35 eAED:0.60 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-13) hypothetical protein [Nicotiana tabacum]; NbC26154970g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|419 NbS00015780g0011.1 protein AED:0.23 eAED:0.23 QI:43|0.90|0.90|1|0.95|0.95|22|460|777; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*SWP) sp|P0A9H7|CFA_ECOLI (e_value=1e-36) Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2;; (*TAIR) AT3G23530.1 (e_value=0.0) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00015780g0008.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.75|0.66|0.75|4|0|655; (*GB) gi|225433229|ref|XP_002285419.1| (e_value=2e-80) PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera];; (*SWP) sp|O43347|MSI1H_HUMAN (e_value=2e-38) RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1;; (*TAIR) AT4G14300.1 (e_value=2e-76) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:8231179-8232785 FORWARD LENGTH=411;; (*ITAG) Solyc09g090520.2.1 (e_value=1e-99) genomic_reference:SL2.40ch09 gene_region:65370536-65373745 transcript_region:SL2.40ch09:65370536..65373745- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00015780g0009.1 protein AED:0.37 eAED:0.50 QI:0|0|0|1|0|0|3|0|115; (*ITAG) Solyc12g039050.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00015780g0010.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|109; (*ITAG) Solyc10g049530.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00012001g0007.1 protein AED:0.08 eAED:0.08 QI:87|0|0|0.66|0.4|0.5|6|0|844; (*GB) gi|359487946|ref|XP_002266568.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255461 [Vitis vinifera];; (*SWP) sp|Q9NXW2|DJB12_HUMAN (e_value=2e-14) DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1 SV=4;; (*TAIR) AT5G18740.1 (e_value=6e-66) | Symbols: | Domain of unknown function (DUF3444) | chr5:6250060-6251352 FORWARD LENGTH=430;; (*ITAG) Solyc08g029220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:23450959-23453328 transcript_region:SL2.40ch08:23450959..23453328- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00023532g0008.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|0|0.5|2|0|127; (*GB) gi|57013957|ref|YP_173429.1| (e_value=3e-23) hypothetical protein NitaMp090 [Nicotiana tabacum]; NbS00023532g0007.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|0|0|2|0|79; (*SWP) sp|P92543|M1110_ARATH (e_value=3e-15) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=2e-16) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g063540.1.1 (e_value=8e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00029192g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|154; (*ITAG) Solyc10g081000.1.1 (e_value=3e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61511728-61512180 transcript_region:SL2.40ch10:61511728..61512180+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029192g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|403; (*GB) gi|225440197|ref|XP_002283542.1| (e_value=6e-90) PREDICTED: uncharacterized protein LOC100248215 [Vitis vinifera];; (*TAIR) AT3G56590.1 (e_value=7e-75) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:20965105-20967675 FORWARD LENGTH=477;; (*ITAG) Solyc10g081010.1.1 (e_value=6e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61515798-61520273 transcript_region:SL2.40ch10:61515798..61520273- functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 ***- Q5JLQ2_ORYSJ)"; NbS00025946g0005.1 protein AED:0.41 eAED:0.50 QI:0|0.25|0.2|1|0.25|0.2|5|0|142; (*GB) gi|32400871|gb|AAP80667.1|AF479048_1 (e_value=3e-71) ribosomal Pr 117, partial [Triticum aestivum];; (*SWP) sp|P49690|RL23_ARATH (e_value=4e-71) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=3e-72) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=1e-73) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00025946g0006.1 protein AED:0.40 eAED:0.62 QI:0|0|0|1|0|0|2|0|98; (*GB) gi|290490254|gb|ADD31534.1| (e_value=2e-19) ATP synthase CF0 subunit I protein [Liquidambar styraciflua];; (*SWP) sp|Q3C1H3|ATPF_NICSY (e_value=4e-20) ATP synthase subunit b, chloroplastic OS=Nicotiana sylvestris GN=atpF PE=3 SV=1;; (*ITAG) ATCG00130.1 (e_value=2e-17) | Symbols: ATPF | ATPase, F0 complex, subunit B/B', bacterial/chloroplast | chrC:11529-12798 REVERSE LENGTH=184;; (*ITAG) Solyc07g021380.1.1 (e_value=9e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:17541562-17541927 transcript_region:SL2.40ch07:17541562..17541927- go_terms:GO:0045263 functional_description:"ATP synthase subunit b, chloroplastic (AHRD V1 ***- ATPF_SOLTU); contains Interpro domain(s) IPR002146 ATPase, F0 complex, subunit B/B', bacterial and chloroplast "; GO:0045263 NbS00021427g0020.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|0|0|2|0|256; (*GB) gi|255540805|ref|XP_002511467.1| (e_value=2e-104) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=8e-104) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=4e-105) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=4e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021427g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|255561767|ref|XP_002521893.1| (e_value=5e-38) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G37870.1 (e_value=2e-35) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc03g079880.2.1 (e_value=2e-22) genomic_reference:SL2.40ch03 gene_region:45233490-45234191 transcript_region:SL2.40ch03:45233490..45234191+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00021427g0021.1 protein AED:0.28 eAED:0.36 QI:29|0.4|0.16|1|0.6|0.33|6|0|200; (*GB) gi|225440081|ref|XP_002282532.1| (e_value=1e-72) PREDICTED: dual specificity protein phosphatase 12 [Vitis vinifera];; (*SWP) sp|Q9JIM4|DUS12_RAT (e_value=4e-15) Dual specificity protein phosphatase 12 OS=Rattus norvegicus GN=Dusp12 PE=2 SV=1;; (*TAIR) AT4G18593.1 (e_value=4e-22) | Symbols: | dual specificity protein phosphatase-related | chr4:10238154-10238698 FORWARD LENGTH=142;; (*ITAG) Solyc12g021190.1.1 (e_value=1e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14653912-14654978 transcript_region:SL2.40ch12:14653912..14654978+ functional_description:"Dual specificity protein phosphatase (AHRD V1 ***- Q2HSZ6_MEDTR)"; NbS00021427g0024.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.33|0.83|0.4|0.5|6|0|461; (*GB) gi|225448469|ref|XP_002269697.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243314 [Vitis vinifera];; (*TAIR) AT3G55990.1 (e_value=0.0) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc05g052540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61910619-61915153 transcript_region:SL2.40ch05:61910619..61915153- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00021427g0022.1 protein AED:0.20 eAED:0.20 QI:18|0.8|0.5|1|0.8|0.66|6|0|305; (*GB) gi|350538149|ref|NP_001234585.1| (e_value=2e-116) chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum];; (*SWP) sp|O20252|S17P_SPIOL (e_value=2e-101) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=2e-96) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00021427g0002.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0|1|1|1|3|0|111; (*GB) gi|224143851|ref|XP_002325096.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=3e-29) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=2e-30) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc03g117800.2.1 (e_value=9e-35) genomic_reference:SL2.40ch03 gene_region:60883263-60887328 transcript_region:SL2.40ch03:60883263..60887328+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00026714g0013.1 protein AED:0.32 eAED:0.36 QI:0|0.8|0.66|1|1|1|6|231|174; (*GB) gi|350538277|ref|NP_001233823.1| (e_value=3e-126) small GTP-binding protein [Solanum lycopersicum];; (*SWP) sp|Q05737|YPTM2_MAIZE (e_value=1e-117) GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1;; (*TAIR) AT1G02130.1 (e_value=2e-116) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc08g078070.2.1 (e_value=6e-129) genomic_reference:SL2.40ch08 gene_region:59084544-59087746 transcript_region:SL2.40ch08:59084544..59087746+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00026714g0012.1 protein AED:0.07 eAED:0.07 QI:324|1|1|1|0.85|0.75|8|703|169; (*ITAG) Solyc00g047700.2.1 (e_value=6e-17) genomic_reference:SL2.40ch00 gene_region:13531987-13532747 transcript_region:SL2.40ch00:13531987..13532747- functional_description:"Unknown Protein (AHRD V1)"; NbS00026714g0004.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|483; (*GB) gi|269996964|gb|ACZ57767.1| (e_value=0.0) glycerolipase A1 [Nicotiana attenuata];; (*SWP) sp|O23522|PLA14_ARATH (e_value=0.0) Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2;; (*TAIR) AT4G16820.1 (e_value=0.0) | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily protein | chr4:9467563-9469116 FORWARD LENGTH=517;; (*ITAG) Solyc08g078090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59094386-59096044 transcript_region:SL2.40ch08:59094386..59096044- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00026714g0009.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|609; (*GB) gi|359497567|ref|XP_002265980.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like, partial [Vitis vinifera];; (*SWP) sp|Q9M4P3|PP316_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3;; (*TAIR) AT4G16835.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=656;; (*ITAG) Solyc08g078080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59087958-59090059 transcript_region:SL2.40ch08:59087958..59090059- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00004685g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|225459188|ref|XP_002284015.1| (e_value=3e-84) PREDICTED: putative clathrin assembly protein At4g40080-like [Vitis vinifera];; (*SWP) sp|Q8L936|CAP16_ARATH (e_value=4e-47) Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2;; (*TAIR) AT4G40080.1 (e_value=3e-48) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:18579371-18580542 FORWARD LENGTH=365;; (*ITAG) Solyc04g074830.1.1 (e_value=5e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58341226-58342242 transcript_region:SL2.40ch04:58341226..58342242+ go_terms:GO:0005488 functional_description:"At4g40080-like protein (Fragment) (AHRD V1 ***- B3SK93_ARALY); contains Interpro domain(s) IPR013809 Epsin-like, N-terminal "; GO:0005488 NbS00009503g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|300681467|emb|CBH32561.1| (e_value=8e-79) histone H3, expressed [Triticum aestivum];; (*SWP) sp|P68428|H32_WHEAT (e_value=3e-80) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=2e-81) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00009503g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|93 NbS00009503g0006.1 protein AED:0.17 eAED:0.25 QI:0|0|0|1|0|0|2|0|93; (*ITAG) Solyc00g013160.1.1 (e_value=4e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10688003-10688564 transcript_region:SL2.40ch00:10688003..10688564- functional_description:"Unknown Protein (AHRD V1)"; NbC25995345g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|127; (*GB) gi|121755934|gb|ABM64814.1| (e_value=1e-29) autophagy protein beclin1 [Chromolaena odorata];; (*SWP) sp|Q9M367|BECN1_ARATH (e_value=4e-22) Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2;; (*TAIR) AT3G61710.3 (e_value=6e-24) | Symbols: BECLIN1, AtBECLIN1 | AUTOPHAGY 6 | chr3:22840211-22841815 REVERSE LENGTH=318;; (*ITAG) Solyc05g050390.2.1 (e_value=2e-30) genomic_reference:SL2.40ch05 gene_region:59651299-59658483 transcript_region:SL2.40ch05:59651299..59658483- go_terms:GO:0005515 functional_description:"Beclin 1 protein (AHRD V1 ***- Q4A184_SOLTU); contains Interpro domain(s) IPR007243 Autophagy-related protein 6 "; GO:0005515 NbS00012212g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|224119696|ref|XP_002318137.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g080320.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62143011-62144084 transcript_region:SL2.40ch04:62143011..62144084+ functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048838g0004.1 protein AED:0.20 eAED:0.21 QI:85|0.69|0.5|1|0.53|0.57|14|0|496; (*GB) gi|225449024|ref|XP_002272997.1| (e_value=0.0) PREDICTED: extended synaptotagmin-2 [Vitis vinifera];; (*SWP) sp|Q7ZWU7|EST2B_XENLA (e_value=6e-15) Extended synaptotagmin-2-B OS=Xenopus laevis GN=esyt2-b PE=2 SV=1;; (*TAIR) AT5G04220.2 (e_value=1e-150) | Symbols: SYTC, ATSYTC, NTMC2TYPE1.3, NTMC2T1.3, SYT3 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:1155985-1158620 REVERSE LENGTH=540;; (*ITAG) Solyc01g111520.2.1 (e_value=5e-157) genomic_reference:SL2.40ch01 gene_region:89504374-89512877 transcript_region:SL2.40ch01:89504374..89512877- go_terms:GO:0005509 functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005509 NbS00001172g0005.1 protein AED:0.02 eAED:0.11 QI:0|0.75|0.4|1|0.25|0.2|5|237|354; (*GB) gi|224075000|ref|XP_002304512.1| (e_value=3e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT1G63820.1 (e_value=3e-50) | Symbols: | CCT motif family protein | chr1:23682529-23684050 REVERSE LENGTH=293;; (*ITAG) Solyc08g081350.2.1 (e_value=7e-126) genomic_reference:SL2.40ch08 gene_region:61584925-61587145 transcript_region:SL2.40ch08:61584925..61587145- functional_description:"Constans-like protein (AHRD V1 *--- Q7Y1T8_BRANA); contains Interpro domain(s) IPR010402 CCT domain "; NbS00001172g0003.1 protein AED:0.28 eAED:0.49 QI:0|0|0|1|0|0|2|0|101; (*ITAG) Solyc08g081360.2.1 (e_value=8e-13) genomic_reference:SL2.40ch08 gene_region:61588831-61591208 transcript_region:SL2.40ch08:61588831..61591208+ functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00019622g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|551; (*GB) gi|147776740|emb|CAN72416.1| (e_value=0.0) hypothetical protein VITISV_027905 [Vitis vinifera];; (*SWP) sp|Q8LDU5|PP298_ARATH (e_value=1e-180) Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2;; (*TAIR) AT4G01400.3 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). | chr4:575843-577243 REVERSE LENGTH=466;; (*ITAG) Solyc11g068470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50268999-50270432 transcript_region:SL2.40ch11:50268999..50270432- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4W3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027158g0003.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|300; (*GB) gi|4206787|gb|AAD11808.1| (e_value=0.0) syntaxin-related protein Nt-syr1 [Nicotiana tabacum];; (*SWP) sp|Q9ZSD4|SY121_ARATH (e_value=3e-143) Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1;; (*TAIR) AT3G11820.2 (e_value=5e-145) | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | syntaxin of plants 121 | chr3:3729540-3730775 REVERSE LENGTH=315;; (*ITAG) Solyc01g006950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1516340-1518150 transcript_region:SL2.40ch01:1516340..1518150- go_terms:GO:0043495 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0043495 NbS00055351g0007.1 protein AED:0.23 eAED:0.25 QI:123|0.88|0.9|1|0.66|0.7|10|317|498; (*GB) gi|224112026|ref|XP_002316057.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSM9|SCP33_ARATH (e_value=0.0) Serine carboxypeptidase-like 33 OS=Arabidopsis thaliana GN=SCPL33 PE=2 SV=2;; (*TAIR) AT3G17180.1 (e_value=0.0) | Symbols: scpl33 | serine carboxypeptidase-like 33 | chr3:5855861-5859157 REVERSE LENGTH=478;; (*ITAG) Solyc12g099160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64752122-64756526 transcript_region:SL2.40ch12:64752122..64756526+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 ***- B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00055351g0008.1 protein AED:0.21 eAED:0.48 QI:0|0|0|0.66|0|0|3|0|248; (*GB) gi|388506470|gb|AFK41301.1| (e_value=3e-77) unknown [Medicago truncatula];; (*SWP) sp|Q9FGY4|FB341_ARATH (e_value=3e-66) F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1;; (*TAIR) AT5G49610.1 (e_value=2e-67) | Symbols: | F-box family protein | chr5:20131448-20132527 REVERSE LENGTH=359;; (*ITAG) Solyc12g099170.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64758148-64759230 transcript_region:SL2.40ch12:64758148..64759230+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR)"; NbS00027257g0009.1 protein AED:0.16 eAED:0.16 QI:168|1|1|1|0.62|0.66|9|323|264; (*GB) gi|77416943|gb|ABA81867.1| (e_value=2e-139) unknown [Solanum tuberosum];; (*TAIR) AT3G55005.1 (e_value=8e-111) | Symbols: TON1B | tonneau 1b (TON1b) | chr3:20384131-20386193 FORWARD LENGTH=257;; (*ITAG) Solyc04g049710.2.1 (e_value=4e-146) genomic_reference:SL2.40ch04 gene_region:42288001-42302109 transcript_region:SL2.40ch04:42288001..42302109- go_terms:GO:0005515 functional_description:"FGFR1 oncogene partner (AHRD V1 *--- FR1OP_HUMAN); contains Interpro domain(s) IPR006594 LisH dimerisation motif "; GO:0005515 NbS00027257g0006.1 protein AED:0.18 eAED:0.19 QI:361|0.78|0.85|1|0.84|0.8|20|260|882; (*GB) gi|225448751|ref|XP_002281489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera];; (*SWP) sp|O95759|TBCD8_HUMAN (e_value=3e-30) TBC1 domain family member 8 OS=Homo sapiens GN=TBC1D8 PE=1 SV=3;; (*TAIR) AT3G55020.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:20389278-20394713 REVERSE LENGTH=777;; (*ITAG) Solyc04g009560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2961142-2970580 transcript_region:SL2.40ch04:2961142..2970580- go_terms:GO:0005622 functional_description:"TBC1 domain family member 8B (AHRD V1 *--- B9A6K5_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00034384g0006.1 protein AED:0.32 eAED:0.32 QI:0|1|0.85|1|1|1|7|0|311; (*GB) gi|297829558|ref|XP_002882661.1| (e_value=1e-169) transcription initiation factor IIB-2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SS44|TF2B2_ARATH (e_value=5e-170) Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=4e-171) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60239317-60242457 transcript_region:SL2.40ch10:60239317..60242457- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbS00034384g0111.1 protein AED:0.02 eAED:0.02 QI:383|1|1|1|0|0|2|236|243 NbS00034384g0104.1 protein AED:0.48 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|137 NbS00020818g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.92|1|0.58|0.69|13|235|636; (*GB) gi|359480865|ref|XP_002275413.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254360 [Vitis vinifera];; (*TAIR) AT2G22140.1 (e_value=7e-129) | Symbols: ATEME1B, EME1B | essential meiotic endonuclease 1B | chr2:9414895-9418584 REVERSE LENGTH=551;; (*ITAG) Solyc04g051490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49756103-49768969 transcript_region:SL2.40ch04:49756103..49768969- go_terms:GO:0006259 functional_description:"Essential meiotic endonuclease 1B (AHRD V1 *-*- C5H8J1_ARATH); contains Interpro domain(s) IPR006166 DNA repair nuclease, XPF-type/Helicase "; GO:0006259 NbS00040151g0003.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|0.66|1|1|3|0|571; (*GB) gi|255580487|ref|XP_002531069.1| (e_value=0.0) spore coat protein, putative [Ricinus communis];; (*SWP) sp|P07788|COTA_BACSU (e_value=2e-107) Spore coat protein A OS=Bacillus subtilis (strain 168) GN=cotA PE=1 SV=4;; (*TAIR) AT1G23010.1 (e_value=0.0) | Symbols: LPR1 | Cupredoxin superfamily protein | chr1:8147353-8149580 FORWARD LENGTH=581;; (*ITAG) Solyc05g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2661278-2665082 transcript_region:SL2.40ch05:2661278..2665082- go_terms:GO:0055114 functional_description:"Bilirubin oxidase (AHRD V1 ***- C6PN69_9CLOT); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0055114 NbS00010417g0007.1 protein AED:0.07 eAED:0.07 QI:87|1|0.71|1|1|1|7|0|449; (*GB) gi|296082466|emb|CBI21471.3| (e_value=3e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G39690.1 (e_value=2e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18417755-18421633 FORWARD LENGTH=650;; (*ITAG) Solyc04g054470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51708018-51719444 transcript_region:SL2.40ch04:51708018..51719444+ functional_description:"Myosin class II heavy chain (ISS) (AHRD V1 *-*- Q014V4_OSTTA)"; NbS00001290g0009.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|0.75|0.8|5|0|561; (*GB) gi|225441549|ref|XP_002281113.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q84W89|RH37_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2;; (*TAIR) AT2G42520.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633;; (*ITAG) Solyc01g005960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00001290g0008.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|0|0|3|0|1004; (*GB) gi|359493546|ref|XP_002267585.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-103) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT5G27060.1 (e_value=2e-141) | Symbols: AtRLP53, RLP53 | receptor like protein 53 | chr5:9522534-9525407 REVERSE LENGTH=957;; (*ITAG) Solyc12g100030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65271557-65274358 transcript_region:SL2.40ch12:65271557..65274358+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00009374g0010.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.85|0.75|8|273|318; (*GB) gi|225453070|ref|XP_002269621.1| (e_value=3e-177) PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5JPI9|MET10_HUMAN (e_value=9e-40) Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2;; (*TAIR) AT1G66680.1 (e_value=1e-149) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358;; (*ITAG) Solyc02g091190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47152463-47157532 transcript_region:SL2.40ch02:47152463..47157532+ go_terms:GO:0016279 functional_description:"Methyltransferase-like protein 10 (AHRD V1 **-* B5XB96_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0016279 NbS00009374g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|225453068|ref|XP_002268613.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100258732 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=3e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc02g091180.1.1 (e_value=5e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47144069-47144569 transcript_region:SL2.40ch02:47144069..47144569+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 **-- B7FA06_ORYSJ)"; NbS00009374g0007.1 protein AED:0.02 eAED:0.02 QI:112|1|0.5|1|1|1|2|0|115; (*GB) gi|224110786|ref|XP_002333031.1| (e_value=6e-22) predicted protein [Populus trichocarpa]; NbS00009374g0011.1 protein AED:0.22 eAED:0.67 QI:64|0|0|1|0|0|2|0|68; (*GB) gi|297838445|ref|XP_002887104.1| (e_value=5e-16) photosystem II CP43 chlorophyll apoprotein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|A6YG77|PSBC_LEPTE (e_value=5e-16) Photosystem II CP43 chlorophyll apoprotein OS=Leptosira terrestris GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=2e-16) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473; NbS00009374g0101.1 protein AED:0.23 eAED:0.23 QI:465|1|0.5|1|0|0|2|0|448 NbS00009374g0112.1 protein AED:0.31 eAED:0.31 QI:45|0.66|0.57|0.85|0.66|0.85|7|0|216 NbS00009374g0113.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|2|0|460 NbS00029305g0006.1 protein AED:0.02 eAED:0.11 QI:508|0.8|0.66|1|1|1|6|0|529; (*GB) gi|225428013|ref|XP_002278408.1| (e_value=3e-175) PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=1e-173) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.2 (e_value=3e-175) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049073 REVERSE LENGTH=1794;; (*ITAG) Solyc01g111530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89516519-89527791 transcript_region:SL2.40ch01:89516519..89527791+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00006255g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.63|0.90|0.7|0.90|11|0|505; (*GB) gi|359476554|ref|XP_002267871.2| (e_value=0.0) PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q92616|GCN1L_HUMAN (e_value=3e-54) Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6;; (*TAIR) AT1G64790.1 (e_value=0.0) | Symbols: ILA | ILITYHIA | chr1:24065232-24081908 REVERSE LENGTH=2610;; (*ITAG) Solyc04g050520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46580155-46600878 transcript_region:SL2.40ch04:46580155..46600878- go_terms:GO:0005488 functional_description:"Translational activator gcn1 (AHRD V1 **-- Q177C0_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00009204g0002.1 protein AED:0.01 eAED:0.01 QI:191|1|0.5|1|0|0|2|0|204; (*GB) gi|224075421|ref|XP_002304626.1| (e_value=4e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47920.1 (e_value=3e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19403458-19404021 REVERSE LENGTH=187;; (*ITAG) Solyc09g091270.1.1 (e_value=7e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:65914537-65915031 transcript_region:SL2.40ch09:65914537..65915031- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 ***- Q9FFY5_ARATH)"; NbS00009204g0011.1 protein AED:0.18 eAED:0.24 QI:251|0.25|0.2|0.6|0.25|0.2|5|0|309; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-11) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00009204g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|1107; (*GB) gi|255554244|ref|XP_002518162.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LVP0|Y5639_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1;; (*TAIR) AT5G63930.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25583006-25586392 FORWARD LENGTH=1102;; (*ITAG) Solyc09g091260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65908750-65912989 transcript_region:SL2.40ch09:65908750..65912989+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00012459g0004.1 protein AED:0.10 eAED:0.10 QI:613|1|1|1|1|0.66|3|1030|343; (*GB) gi|22651698|gb|AAM48290.1| (e_value=7e-172) homeodomain protein Hfi22 [Nicotiana tabacum];; (*SWP) sp|Q940J1|ATB16_ARATH (e_value=2e-62) Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2;; (*TAIR) AT4G40060.1 (e_value=2e-63) | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein 16 | chr4:18571682-18572774 REVERSE LENGTH=294;; (*ITAG) Solyc11g010270.1.1 (e_value=1e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3354569-3357081 transcript_region:SL2.40ch11:3354569..3357081- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00017736g0006.1 protein AED:0.26 eAED:0.26 QI:163|1|1|1|0.66|0.71|7|247|177; (*GB) gi|297832482|ref|XP_002884123.1| (e_value=1e-90) 4-phosphopantetheine adenylyltransferase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZPV8|COAD_ARATH (e_value=3e-91) Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana GN=COAD PE=1 SV=1;; (*TAIR) AT2G18250.1 (e_value=2e-92) | Symbols: ATCOAD, COAD | 4-phosphopantetheine adenylyltransferase | chr2:7940025-7941499 FORWARD LENGTH=176;; (*ITAG) Solyc02g062640.2.1 (e_value=5e-109) genomic_reference:SL2.40ch02 gene_region:28962583-28968170 transcript_region:SL2.40ch02:28962583..28968170+ go_terms:GO:0004595 functional_description:"Pantetheine-phosphate adenylyltransferase (AHRD V1 **** A8NED5_COPC7); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004595 NbS00044637g0003.1 protein AED:0.12 eAED:0.12 QI:193|1|1|1|1|1|2|715|356; (*GB) gi|255538068|ref|XP_002510099.1| (e_value=0.0) E3 ubiquitin ligase PUB14, putative [Ricinus communis];; (*SWP) sp|O22193|PUB4_ARATH (e_value=3e-86) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G01400.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:151920-152987 FORWARD LENGTH=355;; (*ITAG) Solyc04g077850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60322096-60324505 transcript_region:SL2.40ch04:60322096..60324505+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00022129g0005.1 protein AED:0.16 eAED:0.09 QI:1483|0.83|0.84|1|0.83|0.61|13|133|470; (*GB) gi|157042755|gb|ABV02029.1| (e_value=0.0) sucrose sythase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P49037|SUSY_SOLLC (e_value=0.0) Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G43190.1 (e_value=0.0) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc12g009300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2573935-2577879 transcript_region:SL2.40ch12:2573935..2577879- go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** O82693_SOLLC); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00057935g0002.1 protein AED:0.19 eAED:0.19 QI:357|0.66|0.85|1|1|1|7|548|472; (*GB) gi|225444893|ref|XP_002279486.1| (e_value=3e-94) PREDICTED: putative transcription factor bHLH041 [Vitis vinifera];; (*SWP) sp|Q9LTS4|BH041_ARATH (e_value=5e-33) Putative transcription factor bHLH041 OS=Arabidopsis thaliana GN=BHLH41 PE=4 SV=1;; (*TAIR) AT5G56960.1 (e_value=4e-34) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:23038703-23041174 REVERSE LENGTH=466;; (*ITAG) Solyc07g039570.2.1 (e_value=8e-173) genomic_reference:SL2.40ch07 gene_region:45208927-45213761 transcript_region:SL2.40ch07:45208927..45213761+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00039697g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|99 NbS00048408g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|580; (*GB) gi|224128738|ref|XP_002328954.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRK7|AZG1_ARATH (e_value=0.0) Adenine/guanine permease AZG1 OS=Arabidopsis thaliana GN=AZG1 PE=2 SV=1;; (*TAIR) AT3G10960.1 (e_value=0.0) | Symbols: ATAZG1, AZG1 | AZA-guanine resistant1 | chr3:3424986-3426725 REVERSE LENGTH=579;; (*ITAG) Solyc06g050250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:29290915-29292648 transcript_region:SL2.40ch06:29290915..29292648- go_terms:GO:0005345,GO:0015211 functional_description:"Xanthine/uracil permease family protein (AHRD V1 ***- D7L9S9_ARALY); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0005345,GO:0015211 NbS00002846g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|216; (*GB) gi|255568357|ref|XP_002525153.1| (e_value=2e-143) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=1e-141) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-142) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc03g006270.2.1 (e_value=1e-160) genomic_reference:SL2.40ch03 gene_region:888904-890977 transcript_region:SL2.40ch03:888904..890977+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00002846g0106.1 protein AED:0.37 eAED:0.64 QI:0|0|0|1|1|1|2|0|65 NbS00002846g0117.1 protein AED:0.10 eAED:0.10 QI:0|0.63|0.58|1|0.45|0.58|12|0|709 NbS00002846g0113.1 protein AED:0.24 eAED:0.24 QI:121|1|1|1|1|1|8|582|163 NbS00002846g0119.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.4|0.5|0.6|5|0|483 NbS00002846g0118.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.4|0.25|0.4|5|0|337 NbS00002846g0110.1 protein AED:0.95 eAED:0.95 QI:0|0|0|0.2|1|0.6|5|0|202 NbS00044352g0002.1 protein AED:0.15 eAED:0.41 QI:0|1|0|1|0|0|2|0|68 NbS00018754g0009.1 protein AED:0.11 eAED:0.12 QI:411|0.42|0.5|1|0.42|0.37|8|0|689; (*GB) gi|255584317|ref|XP_002532894.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|O65718|CNGC2_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1;; (*TAIR) AT5G15410.2 (e_value=0.0) | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide-regulated ion channel family protein | chr5:5003460-5006512 REVERSE LENGTH=725;; (*ITAG) Solyc02g088560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45186246-45190069 transcript_region:SL2.40ch02:45186246..45190069- go_terms:GO:0005222 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005222 NbS00018754g0010.1 protein AED:0.23 eAED:0.24 QI:0|0.8|0.54|1|0.9|0.81|11|0|807; (*GB) gi|359488959|ref|XP_003633847.1| (e_value=0.0) PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera];; (*SWP) sp|Q9LF41|UBE4_ARATH (e_value=0.0) Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1;; (*TAIR) AT5G15400.1 (e_value=0.0) | Symbols: | U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038;; (*ITAG) Solyc06g074770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42707036-42710008 transcript_region:SL2.40ch06:42707036..42710008+ go_terms:GO:0031625 functional_description:"Ubiquitin conjugation factor E4 (AHRD V1 **** A8NR84_COPC7); contains Interpro domain(s) IPR019474 Ubiquitin conjugation factor E4, core "; GO:0031625 NbS00028861g0004.1 protein AED:0.10 eAED:0.10 QI:133|1|1|1|1|1|3|280|455; (*GB) gi|225444537|ref|XP_002275370.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253669 [Vitis vinifera];; (*TAIR) AT2G34510.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF642 | chr2:14544114-14546732 REVERSE LENGTH=401;; (*ITAG) Solyc02g070540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34865061-34867820 transcript_region:SL2.40ch02:34865061..34867820+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00041863g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.66|1|0.5|0.66|3|244|286; (*GB) gi|225442597|ref|XP_002284456.1| (e_value=1e-116) PREDICTED: uncharacterized protein LOC100261724 [Vitis vinifera];; (*TAIR) AT3G24600.1 (e_value=1e-43) | Symbols: | Late embryogenesis abundant protein, group 2 | chr3:8972195-8974867 REVERSE LENGTH=506;; (*ITAG) Solyc03g120710.2.1 (e_value=1e-147) genomic_reference:SL2.40ch03 gene_region:63062243-63065253 transcript_region:SL2.40ch03:63062243..63065253+ functional_description:"Harpin-induced protein (AHRD V1 **-- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00041863g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|447|313; (*GB) gi|305379592|gb|ADM48810.1| (e_value=0.0) hydroxyphenylpyruvate reductase [Perilla frutescens];; (*SWP) sp|Q8U3Y2|GYAR_PYRFU (e_value=3e-54) Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=7e-164) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc03g120670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63038516-63041258 transcript_region:SL2.40ch03:63038516..63041258+ go_terms:GO:0042802 functional_description:"D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (AHRD V1 **** C6BAQ7_RHILS); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0042802 NbS00041863g0012.1 protein AED:0.52 eAED:0.52 QI:0|0.25|0|0.6|1|1|5|0|313; (*GB) gi|225442601|ref|XP_002284520.1| (e_value=9e-100) PREDICTED: glyoxylate reductase [Vitis vinifera];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=3e-45) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=8e-89) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc03g120680.2.1 (e_value=3e-122) genomic_reference:SL2.40ch03 gene_region:63041368-63043912 transcript_region:SL2.40ch03:63041368..63043912+ go_terms:GO:0047964 functional_description:"Glyoxylate reductase (AHRD V1 **** B6TL24_MAIZE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0047964 NbS00041863g0015.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|94; (*GB) gi|255549960|ref|XP_002516031.1| (e_value=1e-58) cytoplasmic dynein light chain, putative [Ricinus communis];; (*SWP) sp|P63170|DYL1_RAT (e_value=4e-23) Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1;; (*TAIR) AT1G52240.2 (e_value=7e-56) | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide exchange factor 11 | chr1:19458844-19459235 REVERSE LENGTH=94;; (*ITAG) Solyc12g044240.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44589739-44590138 transcript_region:SL2.40ch12:44589739..44590138+ go_terms:GO:0042803 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 ***- C1C420_RANCA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00052332g0001.1 protein AED:0.06 eAED:0.14 QI:0|0|0|0.75|0|0|4|0|249; (*GB) gi|255583315|ref|XP_002532420.1| (e_value=3e-44) acyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9XGY6|WAXS1_SIMCH (e_value=7e-35) Long-chain-alcohol O-fatty-acyltransferase OS=Simmondsia chinensis PE=1 SV=1;; (*TAIR) AT3G51970.1 (e_value=2e-35) | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345;; (*ITAG) Solyc11g012240.1.1 (e_value=6e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5126823-5127884 transcript_region:SL2.40ch11:5126823..5127884- go_terms:GO:0005515,GO:0008415 functional_description:"Wax synthase isoform 3 (AHRD V1 **-- Q84XY7_VITVI)"; GO:0005515,GO:0008415 NbS00035759g0001.1 protein AED:0.24 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|83 NbS00005777g0005.1 protein AED:0.02 eAED:0.02 QI:341|1|1|1|1|1|2|403|641; (*GB) gi|225442089|ref|XP_002272580.1| (e_value=0.0) PREDICTED: cation/calcium exchanger 4 [Vitis vinifera];; (*SWP) sp|Q9LJI2|CCX3_ARATH (e_value=0.0) Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1;; (*TAIR) AT3G14070.1 (e_value=0.0) | Symbols: CAX9, CCX3, ATCCX3 | cation exchanger 9 | chr3:4661143-4663074 REVERSE LENGTH=643;; (*ITAG) Solyc02g069710.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00049183g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|57013948|ref|YP_173421.1| (e_value=6e-75) hypothetical protein NitaMp079 [Nicotiana tabacum]; NbS00049183g0003.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-14) hypothetical protein [Nicotiana tabacum]; NbS00031588g0013.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|172; (*GB) gi|224103169|ref|XP_002312952.1| (e_value=5e-69) aquaporin, MIP family, PIP subfamily [Populus trichocarpa];; (*SWP) sp|P93004|PIP27_ARATH (e_value=1e-66) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=7e-68) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc08g008050.2.1 (e_value=5e-56) genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00031588g0008.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|3|576|213; (*GB) gi|224139422|ref|XP_002323104.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g031900.2.1 (e_value=1e-58) genomic_reference:SL2.40ch09 gene_region:24057943-24059342 transcript_region:SL2.40ch09:24057943..24059342+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031588g0009.1 protein AED:0.29 eAED:0.45 QI:0|1|0|1|1|1|2|0|226; (*GB) gi|118486089|gb|ABK94888.1| (e_value=3e-84) unknown [Populus trichocarpa];; (*SWP) sp|Q9ZVI6|LOR8_ARATH (e_value=5e-64) Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1;; (*TAIR) AT2G38640.1 (e_value=3e-65) | Symbols: | Protein of unknown function (DUF567) | chr2:16157725-16158474 REVERSE LENGTH=196;; (*ITAG) Solyc08g081680.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61814047-61815302 transcript_region:SL2.40ch08:61814047..61815302- functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00031619g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|1|0.5|0.6|5|260|296; (*GB) gi|350537455|ref|NP_001234294.1| (e_value=2e-132) transcription factor [Solanum lycopersicum];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=1e-82) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT1G08810.1 (e_value=3e-84) | Symbols: MYB60, AtMYB60 | myb domain protein 60 | chr1:2819279-2820329 REVERSE LENGTH=280;; (*ITAG) Solyc02g067340.2.1 (e_value=1e-135) genomic_reference:SL2.40ch02 gene_region:32118568-32121578 transcript_region:SL2.40ch02:32118568..32121578- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SN78_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00004383g0004.1 protein AED:0.12 eAED:0.12 QI:53|0.5|0.4|1|0.5|0.4|5|0|239; (*GB) gi|297739992|emb|CBI30174.3| (e_value=1e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|P38094|FLUG_EMENI (e_value=3e-13) Protein fluG OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fluG PE=1 SV=1;; (*TAIR) AT3G53180.1 (e_value=4e-82) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083840.1.1 (e_value=1e-94) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62902596-62906747 transcript_region:SL2.40ch10:62902596..62906747- functional_description:"FluG protein (AHRD V1 ***- C4JDZ6_UNCRE)"; NbS00039393g0005.1 protein AED:0.12 eAED:0.13 QI:212|0.86|0.87|1|0.69|0.79|24|244|1133; (*GB) gi|359495585|ref|XP_002265337.2| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 3-like [Vitis vinifera];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=0.0) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=0.0) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc01g011100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:7606130-7621713 transcript_region:SL2.40ch01:7606130..7621713+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00016717g0006.1 protein AED:0.20 eAED:0.20 QI:354|0.9|0.85|1|0.7|0.66|21|550|608; (*GB) gi|225440540|ref|XP_002273173.1| (e_value=0.0) PREDICTED: peptidyl-prolyl isomerase PASTICCINO1 [Vitis vinifera];; (*SWP) sp|Q7DMA9|PAS1_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2;; (*TAIR) AT3G54010.1 (e_value=0.0) | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:20001042-20005063 FORWARD LENGTH=635;; (*ITAG) Solyc11g011420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4485102-4493711 transcript_region:SL2.40ch11:4485102..4493711+ go_terms:GO:0006457,GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457,GO:0005488 NbS00016717g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|357460823|ref|XP_003600693.1| (e_value=1e-86) Aspartic proteinase nepenthesin-1 [Medicago truncatula];; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=4e-17) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT5G37540.1 (e_value=2e-85) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:14912862-14914190 FORWARD LENGTH=442;; (*ITAG) Solyc11g011440.1.1 (e_value=5e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4499426-4500724 transcript_region:SL2.40ch11:4499426..4500724- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TS94_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00002476g0005.1 protein AED:0.10 eAED:0.10 QI:566|0.76|0.68|0.95|0.71|0.54|22|0|1014; (*GB) gi|225433442|ref|XP_002285674.1| (e_value=0.0) PREDICTED: non-lysosomal glucosylceramidase-like [Vitis vinifera];; (*SWP) sp|Q5M868|GBA2_RAT (e_value=3e-164) Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2;; (*TAIR) AT3G24180.2 (e_value=0.0) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr3:8735011-8741147 REVERSE LENGTH=950;; (*ITAG) Solyc09g091850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66402329-66414666 transcript_region:SL2.40ch09:66402329..66414666- go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9RWK0_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00023274g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|137; (*GB) gi|225456087|ref|XP_002281066.1| (e_value=1e-74) PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera];; (*SWP) sp|Q949S9|SPF27_ARATH (e_value=1e-67) Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1;; (*TAIR) AT3G18165.1 (e_value=1e-68) | Symbols: MOS4 | modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253;; (*ITAG) Solyc03g119010.2.1 (e_value=4e-92) genomic_reference:SL2.40ch03 gene_region:61790538-61792835 transcript_region:SL2.40ch03:61790538..61792835- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SPF27 (AHRD V1 **-- D3PJ34_9MAXI); contains Interpro domain(s) IPR008409 Breast carcinoma amplified sequence 2 "; GO:0005515 NbS00023274g0006.1 protein AED:0.26 eAED:0.26 QI:0|1|0.83|1|1|0.83|6|0|367; (*GB) gi|225456094|ref|XP_002281306.1| (e_value=9e-167) PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera];; (*SWP) sp|Q8S9K7|PEX32_ARATH (e_value=5e-146) Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1;; (*TAIR) AT1G48635.1 (e_value=4e-147) | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983951-17985966 FORWARD LENGTH=364;; (*ITAG) Solyc03g119030.2.1 (e_value=2e-171) genomic_reference:SL2.40ch03 gene_region:61795368-61806928 transcript_region:SL2.40ch03:61795368..61806928- go_terms:GO:0005779 functional_description:"Peroxisomal biogenesis factor 3 (AHRD V1 ***- Q28F64_XENTR); contains Interpro domain(s) IPR006966 Peroxin-3 "; GO:0005779 NbS00036392g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|174; (*GB) gi|57013961|ref|YP_173433.1| (e_value=3e-53) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*ITAG) Solyc11g063540.1.1 (e_value=5e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00032334g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.4|1|0.5|0.8|5|0|203; (*GB) gi|14719276|gb|AAK73102.1|AF390556_1 (e_value=8e-13) Bax inhibitor 1 [Nicotiana tabacum];; (*SWP) sp|Q9LD45|BI1_ARATH (e_value=2e-12) Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1;; (*TAIR) AT5G47120.1 (e_value=1e-13) | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 1 | chr5:19136071-19137585 FORWARD LENGTH=247;; (*ITAG) Solyc01g090110.1.1 (e_value=3e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:75519651-75522070 transcript_region:SL2.40ch01:75519651..75522070- functional_description:"Bax inhibitor 1 (AHRD V1 ***- C6GAD3_CAPAN)"; NbS00001412g0011.1 protein AED:0.08 eAED:0.08 QI:115|0.8|0.83|1|0.8|0.83|6|515|776; (*GB) gi|147846688|emb|CAN80644.1| (e_value=6e-38) hypothetical protein VITISV_016915 [Vitis vinifera];; (*TAIR) AT1G68030.1 (e_value=4e-14) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:25500378-25501544 REVERSE LENGTH=314;; (*ITAG) Solyc03g063720.2.1 (e_value=5e-133) genomic_reference:SL2.40ch03 gene_region:33035437-33037712 transcript_region:SL2.40ch03:33035437..33037712+ go_terms:GO:0008270 functional_description:"Os11g0482500 protein (Fragment) (AHRD V1 *-*- C7J993_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00001412g0008.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|218; (*GB) gi|359481780|ref|XP_002277662.2| (e_value=2e-58) PREDICTED: dehydration-responsive element-binding protein 2F-like [Vitis vinifera];; (*SWP) sp|Q9SVX5|DRE2F_ARATH (e_value=7e-31) Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1;; (*TAIR) AT3G57600.1 (e_value=6e-32) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:21332841-21333674 FORWARD LENGTH=277; NbS00001412g0012.1 protein AED:0.02 eAED:0.02 QI:155|0.75|0.6|1|1|1|5|551|485; (*GB) gi|75324707|sp|Q6T7E8.1|PURA_TOBAC (e_value=0.0) RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=AdSS; AltName: Full=IMP--aspartate ligase; Flags: Precursor;; (*SWP) sp|Q6T7E8|PURA_TOBAC (e_value=0.0) Adenylosuccinate synthetase, chloroplastic OS=Nicotiana tabacum GN=PURA PE=2 SV=1;; (*TAIR) AT3G57610.1 (e_value=0.0) | Symbols: ADSS | adenylosuccinate synthase | chr3:21334519-21336603 REVERSE LENGTH=490;; (*ITAG) Solyc10g080320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60933642-60936711 transcript_region:SL2.40ch10:60933642..60936711- go_terms:GO:0004019 functional_description:"Adenylosuccinate synthetase (AHRD V1 **** Q9FYW9_SOLLC); contains Interpro domain(s) IPR001114 Adenylosuccinate synthetase "; GO:0004019 NbS00001412g0004.1 protein AED:0.22 eAED:0.29 QI:0|0.75|0.4|1|1|1|5|0|521; (*GB) gi|255557939|ref|XP_002519998.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=2e-116) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=2e-117) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc10g080330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60938838-60941475 transcript_region:SL2.40ch10:60938838..60941475- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001412g0102.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|66 NbS00026887g0005.1 protein AED:0.07 eAED:0.07 QI:58|0.83|0.69|1|0.75|0.69|13|415|641; (*GB) gi|224122936|ref|XP_002318953.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P93648|LONM_MAIZE (e_value=0.0) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=0.0) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13247058-13273748 transcript_region:SL2.40ch10:13247058..13273748+ go_terms:GO:0008236 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR004815 Peptidase S16, ATP-dependent protease La "; GO:0008236 NbS00026887g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|0.66|3|0|85; (*GB) gi|225450599|ref|XP_002277956.1| (e_value=3e-46) PREDICTED: lon protease homolog, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P93648|LONM_MAIZE (e_value=3e-44) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=1e-43) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024310.1.1 (e_value=1e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13244617-13246336 transcript_region:SL2.40ch10:13244617..13246336+ go_terms:GO:0006508 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00012780g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0.37|0.22|9|0|638; (*GB) gi|224133338|ref|XP_002321542.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=0.0) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=0.0) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc06g071150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40129609-40134130 transcript_region:SL2.40ch06:40129609..40134130+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00012780g0010.1 protein AED:0.08 eAED:0.08 QI:415|0.85|0.87|1|0.71|0.62|8|310|704; (*GB) gi|225424845|ref|XP_002268603.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 19 [Vitis vinifera];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc06g071160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40134685-40138844 transcript_region:SL2.40ch06:40134685..40138844- go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00012780g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|255559270|ref|XP_002520655.1| (e_value=4e-11) nucleic acid binding protein, putative [Ricinus communis];; (*ITAG) Solyc09g074780.2.1 (e_value=1e-31) genomic_reference:SL2.40ch09 gene_region:62085904-62089680 transcript_region:SL2.40ch09:62085904..62089680+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 **-- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00012780g0013.1 protein AED:0.25 eAED:0.61 QI:74|0|0|1|0|0|3|0|144; (*ITAG) Solyc09g074780.2.1 (e_value=2e-22) genomic_reference:SL2.40ch09 gene_region:62085904-62089680 transcript_region:SL2.40ch09:62085904..62089680+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 **-- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00004675g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|146 NbS00004675g0005.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|0|0|3|0|113; (*GB) gi|21536858|gb|AAM61190.1| (e_value=2e-35) unknown [Arabidopsis thaliana];; (*SWP) sp|Q9FJU4|MIOX5_ARATH (e_value=4e-36) Inositol oxygenase 5 OS=Arabidopsis thaliana GN=MIOX5 PE=2 SV=1;; (*TAIR) AT5G56640.1 (e_value=3e-37) | Symbols: MIOX5 | myo-inositol oxygenase 5 | chr5:22927534-22929638 REVERSE LENGTH=314;; (*ITAG) Solyc12g098120.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64102487-64103356 transcript_region:SL2.40ch12:64102487..64103356+ go_terms:GO:0005737 functional_description:"Inositol oxygenase (AHRD V1 ***- C5JNF6_AJEDS); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0005737 NbS00039239g0001.1 protein AED:0.10 eAED:0.10 QI:26|0.66|0.61|1|0.83|0.69|13|313|785; (*GB) gi|297739295|emb|CBI28946.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94C37|HDG2_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1;; (*TAIR) AT1G05230.4 (e_value=0.0) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=721;; (*ITAG) Solyc12g005830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:468371-472633 transcript_region:SL2.40ch12:468371..472633+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 ***- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0005634,GO:0006355,GO:0045449 NbS00039239g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|125 NbS00039239g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|1|1|5|147|307; (*GB) gi|225447296|ref|XP_002279761.1| (e_value=3e-97) PREDICTED: septum-promoting GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=2e-49) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.3 (e_value=4e-90) | Symbols: SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=292;; (*ITAG) Solyc12g005840.1.1 (e_value=1e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:474797-477406 transcript_region:SL2.40ch12:474797..477406- go_terms:GO:0007264,GO:0015031,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 *-*- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005622 NbS00058789g0004.1 protein AED:0.39 eAED:0.44 QI:0|0.25|0.2|0.8|0.25|0.4|5|0|193; (*GB) gi|225451517|ref|XP_002272710.1| (e_value=3e-55) PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Vitis vinifera];; (*SWP) sp|Q9LSD8|MUB4_ARATH (e_value=1e-47) Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1;; (*TAIR) AT3G26980.1 (e_value=1e-48) | Symbols: MUB4 | membrane-anchored ubiquitin-fold protein 4 precursor | chr3:9946467-9947444 REVERSE LENGTH=120;; (*ITAG) Solyc02g094350.2.1 (e_value=1e-62) genomic_reference:SL2.40ch02 gene_region:49475541-49480207 transcript_region:SL2.40ch02:49475541..49480207- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00007568g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.25|0|1|0.25|0.2|5|402|409; (*GB) gi|225445545|ref|XP_002285295.1| (e_value=0.0) PREDICTED: actin-related protein 6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LGE3|ARP6_ARATH (e_value=0.0) Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1;; (*TAIR) AT3G33520.1 (e_value=0.0) | Symbols: ATARP6, ARP6, SUF3, ESD1 | actin-related protein 6 | chr3:14093791-14095476 REVERSE LENGTH=421;; (*ITAG) Solyc05g018600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22403561-22406376 transcript_region:SL2.40ch05:22403561..22406376- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q0IFH2_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00039471g0001.1 protein AED:0.42 eAED:0.75 QI:0|0|0|0.5|1|1|4|0|150; (*GB) gi|255586628|ref|XP_002533945.1| (e_value=1e-76) catalytic, putative [Ricinus communis];; (*TAIR) AT5G38360.1 (e_value=1e-63) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15332289-15333556 REVERSE LENGTH=239;; (*ITAG) Solyc02g086080.2.1 (e_value=3e-87) genomic_reference:SL2.40ch02 gene_region:43441149-43444197 transcript_region:SL2.40ch02:43441149..43444197+ functional_description:"Alpha/beta hydrolase fold (AHRD V1 ***- A1T9R4_MYCVP); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00003183g0011.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|1|0.8|5|0|361; (*GB) gi|317451426|emb|CBV37053.1| (e_value=2e-147) GDSL lipase-like chlorogenate-dependent caffeoyltransferase precursor [Solanum lycopersicum];; (*SWP) sp|Q8RXT9|GDL8_ARATH (e_value=2e-83) GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2;; (*TAIR) AT1G28590.1 (e_value=2e-84) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc01g099050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81149642-81151267 transcript_region:SL2.40ch01:81149642..81151267- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00003183g0015.1 protein AED:0.05 eAED:0.10 QI:0|0|0|1|0|0.16|6|0|624; (*GB) gi|225450928|ref|XP_002280725.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g05340 [Vitis vinifera];; (*SWP) sp|Q9MA85|PP215_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2;; (*TAIR) AT3G05340.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1524071-1526047 REVERSE LENGTH=658;; (*ITAG) Solyc01g099000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81111149-81113152 transcript_region:SL2.40ch01:81111149..81113152- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3T5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00003183g0016.1 protein AED:0.24 eAED:0.24 QI:129|0.87|0.77|1|0.87|0.88|9|478|331; (*GB) gi|225450962|ref|XP_002284712.1| (e_value=6e-150) PREDICTED: uncharacterized protein LOC100264831 [Vitis vinifera];; (*TAIR) AT5G27560.1 (e_value=1e-143) | Symbols: | Domain of unknown function (DUF1995) | chr5:9731758-9733644 FORWARD LENGTH=341;; (*ITAG) Solyc01g098990.2.1 (e_value=4e-163) genomic_reference:SL2.40ch01 gene_region:81105285-81111003 transcript_region:SL2.40ch01:81105285..81111003+ functional_description:"Os06g0146300 protein (Fragment) (AHRD V1 ***- Q0DEL6_ORYSJ); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00011643g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|8|0|385; (*GB) gi|18138083|gb|AAL60068.1|AF216835_1 (e_value=0.0) forever young oxidoreductase [Solanum lycopersicum];; (*SWP) sp|Q91WL8|WWOX_MOUSE (e_value=2e-38) WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1;; (*TAIR) AT4G27760.1 (e_value=0.0) | Symbols: FEY, FEY3 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13844151-13846563 FORWARD LENGTH=376;; (*ITAG) Solyc03g098460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54192253-54200735 transcript_region:SL2.40ch03:54192253..54200735- go_terms:GO:0004745,GO:0046983 functional_description:"Retinol dehydrogenase 12 (AHRD V1 **-* B5XB52_SALSA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745,GO:0046983 NbS00011643g0015.1 protein AED:0.07 eAED:0.07 QI:151|1|1|1|0.8|0.83|6|432|88; (*GB) gi|356508935|ref|XP_003523208.1| (e_value=2e-56) PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max];; (*SWP) sp|A1XQR9|RUXE_PIG (e_value=1e-41) Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1;; (*TAIR) AT4G30330.1 (e_value=1e-55) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88;; (*ITAG) Solyc03g098470.2.1 (e_value=7e-59) genomic_reference:SL2.40ch03 gene_region:54202388-54206465 transcript_region:SL2.40ch03:54202388..54206465- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein E (AHRD V1 ***- B6SXC3_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00011643g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|208; (*ITAG) Solyc03g098480.1.1 (e_value=2e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:54208222-54209199 transcript_region:SL2.40ch03:54208222..54209199- functional_description:"Unknown Protein (AHRD V1)"; NbS00011643g0016.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|0|0|2|0|233; (*ITAG) Solyc03g098490.1.1 (e_value=2e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00011643g0017.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0|2|0|187; (*ITAG) Solyc03g098490.1.1 (e_value=1e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00056164g0004.1 protein AED:0.07 eAED:0.07 QI:134|1|1|1|0.85|0.75|8|475|533; (*GB) gi|257831429|gb|ACV71015.1| (e_value=0.0) UPA15 [Capsicum annuum];; (*SWP) sp|Q9FNI7|CSLA2_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1;; (*TAIR) AT5G22740.1 (e_value=0.0) | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534;; (*ITAG) Solyc06g074630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42557856-42561392 transcript_region:SL2.40ch06:42557856..42561392- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-* A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00043958g0005.1 protein AED:0.05 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|338; (*GB) gi|224133072|ref|XP_002321475.1| (e_value=8e-105) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=9e-79) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT3G18400.1 (e_value=1e-99) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314;; (*ITAG) Solyc12g036480.1.1 (e_value=9e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31380780-31383643 transcript_region:SL2.40ch12:31380780..31383643- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00007842g0008.1 protein AED:0.04 eAED:0.04 QI:101|1|0.5|1|1|1|4|0|576; (*GB) gi|255550992|ref|XP_002516544.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g095810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63270717-63276021 transcript_region:SL2.40ch12:63270717..63276021+ go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00007842g0009.1 protein AED:0.27 eAED:0.27 QI:81|0.88|0.6|1|0.55|0.6|10|410|325; (*GB) gi|224092276|ref|XP_002309539.1| (e_value=5e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11640.1 (e_value=3e-37) | Symbols: | Thioredoxin superfamily protein | chr5:3742008-3743703 FORWARD LENGTH=253;; (*ITAG) Solyc12g095820.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63278066-63285423 transcript_region:SL2.40ch12:63278066..63285423+ functional_description:"Thioredoxin-related transmembrane protein 2 (AHRD V1 ***- TMX2_XENTR); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00011428g0011.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|138; (*GB) gi|359480262|ref|XP_002265742.2| (e_value=2e-47) PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera];; (*TAIR) AT2G47710.1 (e_value=2e-42) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc12g099520.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64985850-64987166 transcript_region:SL2.40ch12:64985850..64987166- go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00011428g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.7|0.63|1|0.1|0.18|11|1696|790; (*GB) gi|225432246|ref|XP_002275652.1| (e_value=0.0) PREDICTED: condensin-2 complex subunit D3-like [Vitis vinifera];; (*TAIR) AT4G15890.1 (e_value=0.0) | Symbols: | binding | chr4:9017453-9022745 FORWARD LENGTH=1314;; (*ITAG) Solyc12g099510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64971202-64984594 transcript_region:SL2.40ch12:64971202..64984594- go_terms:GO:0005488,GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0005488,GO:0006457,GO:0031072 NbS00011428g0118.1 protein AED:0.00 eAED:0.00 QI:200|1|1|1|1|1|2|466|90 NbS00011428g0117.1 protein AED:0.17 eAED:0.17 QI:159|1|0.88|1|0.87|0.88|9|0|464 NbS00011428g0103.1 protein AED:0.25 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|61|376 NbS00011428g0119.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|0.66|0.5|0.33|3|0|158 NbS00042470g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|1|3|0|243; (*GB) gi|197723812|gb|ACH72790.1| (e_value=1e-95) small basic intrinsic protein 1-2 [Olea europaea];; (*SWP) sp|Q9ATM2|SIP12_MAIZE (e_value=8e-77) Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1;; (*TAIR) AT3G04090.1 (e_value=5e-66) | Symbols: SIP1;1, SIP1A | small and basic intrinsic protein 1A | chr3:1072340-1074031 REVERSE LENGTH=240;; (*ITAG) Solyc10g078490.1.1 (e_value=6e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59623304-59626910 transcript_region:SL2.40ch10:59623304..59626910- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B0X7V5_CULQU); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00004500g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.7|0.63|1|0.9|0.81|11|526|1068; (*GB) gi|357494883|ref|XP_003617730.1| (e_value=0.0) Multidrug resistance protein ABC transporter family [Medicago truncatula];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=0.0) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.1 (e_value=0.0) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1514;; (*ITAG) Solyc07g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00004500g0017.1 protein AED:0.07 eAED:0.09 QI:0|0.63|0.58|1|0.72|0.66|12|434|1533; (*GB) gi|359494289|ref|XP_003634753.1| (e_value=0.0) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=0.0) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.1 (e_value=0.0) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1514;; (*ITAG) Solyc07g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00004500g0016.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|581; (*GB) gi|359494168|ref|XP_002265605.2| (e_value=3e-173) PREDICTED: ABC transporter C family member 3-like [Vitis vinifera];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=5e-147) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.4 (e_value=2e-151) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4197606-4201250 REVERSE LENGTH=1120;; (*ITAG) Solyc07g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00016254g0004.1 protein AED:0.11 eAED:0.23 QI:69|0.75|0.6|1|0.5|0.6|5|0|149; (*GB) gi|255560888|ref|XP_002521457.1| (e_value=9e-78) COMPASS component SWD2, putative [Ricinus communis];; (*SWP) sp|Q6NV31|WDR82_DANRE (e_value=9e-22) WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1;; (*TAIR) AT5G14530.1 (e_value=1e-70) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4684782-4686865 REVERSE LENGTH=330;; (*ITAG) Solyc12g035360.1.1 (e_value=1e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:24407410-24424040 transcript_region:SL2.40ch12:24407410..24424040+ go_terms:GO:0005515,GO:0042800 functional_description:"Histone H3 methyltransferase complex and RNA cleavage factor II complex subunit SWD2 (AHRD V1 **-* A9SRV1_PHYPA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0042800 NbS00036564g0012.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|1|1|4|0|245; (*GB) gi|255576215|ref|XP_002529001.1| (e_value=4e-100) Nitrogen fixation protein nifU, putative [Ricinus communis];; (*SWP) sp|Q93W20|NIFU2_ARATH (e_value=3e-95) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1;; (*TAIR) AT5G49940.1 (e_value=2e-96) | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr5:20315464-20317228 FORWARD LENGTH=235;; (*ITAG) Solyc01g103710.2.1 (e_value=3e-118) genomic_reference:SL2.40ch01 gene_region:84025720-84029325 transcript_region:SL2.40ch01:84025720..84029325+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_BUCCC); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00036564g0013.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.57|0.16|0|7|0|303; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=6e-98) potassium channel [Nicotiana paniculata];; (*SWP) sp|Q75HP9|AKT2_ORYSJ (e_value=1e-38) Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1;; (*TAIR) AT4G22200.1 (e_value=2e-38) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=2e-89) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00036564g0015.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|1|0|0|2|75|69 NbS00036564g0016.1 protein AED:0.29 eAED:0.33 QI:0|0.82|0.66|0.94|0.88|0.83|18|0|702; (*GB) gi|255576217|ref|XP_002529002.1| (e_value=0.0) ribosome biogenesis protein bop1, putative [Ricinus communis];; (*SWP) sp|A8ID74|BOP1_CHLRE (e_value=0.0) Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2;; (*TAIR) AT2G40360.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:16853123-16856635 REVERSE LENGTH=753;; (*ITAG) Solyc01g103740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84033386-84038118 transcript_region:SL2.40ch01:84033386..84038118- go_terms:GO:0005634 functional_description:"Ribosome biogenesis protein ERB1 (AHRD V1 ***- ERB1_CRYNE); contains Interpro domain(s) IPR012953 BOP1, N-terminal "; GO:0005634 NbS00000153g0004.1 protein AED:0.12 eAED:0.12 QI:186|0.28|0.12|0.87|1|1|8|0|489; (*GB) gi|71480741|gb|AAK85402.2| (e_value=0.0) beta-1,3-glucanase [Camellia sinensis];; (*SWP) sp|Q9C7U5|E132_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2;; (*TAIR) AT1G66250.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24693063-24695416 FORWARD LENGTH=505;; (*ITAG) Solyc04g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00000153g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|0.75|1|1|4|16|202; (*GB) gi|357491991|ref|XP_003616283.1| (e_value=9e-102) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q9FHQ1|GDL80_ARATH (e_value=2e-95) GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1;; (*TAIR) AT5G37690.1 (e_value=2e-96) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:14973610-14976115 REVERSE LENGTH=356;; (*ITAG) Solyc11g011110.1.1 (e_value=9e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4194854-4197731 transcript_region:SL2.40ch11:4194854..4197731- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g37690 (AHRD V1 ***- GDL80_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00024212g0009.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|0|0|4|0|247; (*GB) gi|13492676|gb|AAK28304.1|AF346432_1 (e_value=2e-107) phenylpropanoid:glucosyltransferase 2, partial [Nicotiana tabacum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=8e-69) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=2e-63) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=9e-107) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00024212g0008.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|160; (*GB) gi|1685003|gb|AAB36652.1| (e_value=6e-87) immediate-early salicylate-induced glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=4e-59) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=3e-57) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00030163g0006.1 protein AED:0.22 eAED:0.23 QI:0|0.75|0.6|1|0.75|0.8|5|0|653; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=2e-110) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=2e-90) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=2e-90) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc03g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1104857-1110299 transcript_region:SL2.40ch03:1104857..1110299- go_terms:GO:0005524 functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; GO:0005524 NbS00030163g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|0|0|2|0|63; (*GB) gi|224113987|ref|XP_002316635.1| (e_value=4e-29) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9ZNU2|NAC18_ARATH (e_value=1e-22) NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1;; (*TAIR) AT1G61110.1 (e_value=9e-28) | Symbols: anac025, NAC025 | NAC domain containing protein 25 | chr1:22516730-22518055 FORWARD LENGTH=323;; (*ITAG) Solyc07g063420.2.1 (e_value=2e-29) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00030163g0008.1 protein AED:0.83 eAED:0.87 QI:0|0|0|1|0|0.5|2|0|93 NbS00030163g0005.1 protein AED:0.45 eAED:0.53 QI:53|0|0|1|0|0|2|0|102; (*GB) gi|224116152|ref|XP_002317226.1| (e_value=2e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g006530.2.1 (e_value=3e-45) genomic_reference:SL2.40ch03 gene_region:1104857-1110299 transcript_region:SL2.40ch03:1104857..1110299- go_terms:GO:0005524 functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; GO:0005524 NbS00044576g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|574; (*GB) gi|225427504|ref|XP_002263624.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FX35|PP117_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2;; (*TAIR) AT1G73400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27598106-27599812 FORWARD LENGTH=568;; (*ITAG) Solyc04g079150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61320136-61321845 transcript_region:SL2.40ch04:61320136..61321845- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRI2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00044576g0007.1 protein AED:0.10 eAED:0.32 QI:0|0|0|1|0|0|5|0|454; (*GB) gi|225427504|ref|XP_002263624.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FX35|PP117_ARATH (e_value=3e-171) Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2;; (*TAIR) AT1G73400.1 (e_value=2e-172) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27598106-27599812 FORWARD LENGTH=568;; (*ITAG) Solyc04g079150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61320136-61321845 transcript_region:SL2.40ch04:61320136..61321845- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRI2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00037836g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|1|1|1|4|707|409; (*GB) gi|356512904|ref|XP_003525154.1| (e_value=8e-84) PREDICTED: patellin-3-like [Glycine max];; (*SWP) sp|Q56Z59|PATL3_ARATH (e_value=2e-71) Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2;; (*TAIR) AT1G72160.1 (e_value=1e-72) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:27153823-27155609 REVERSE LENGTH=490;; (*ITAG) Solyc06g064940.2.1 (e_value=4e-114) genomic_reference:SL2.40ch06 gene_region:36880788-36883493 transcript_region:SL2.40ch06:36880788..36883493- functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- SFH5_YARLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00012600g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|224134899|ref|XP_002327517.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15760.1 (e_value=6e-55) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=202;; (*ITAG) Solyc06g068310.1.1 (e_value=1e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38708779-38709360 transcript_region:SL2.40ch06:38708779..38709360+ functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00008165g0001.1 protein AED:0.10 eAED:0.10 QI:185|0.5|0.66|1|1|1|3|318|298; (*GB) gi|350534426|ref|NP_001234652.1| (e_value=1e-107) NAC domain protein [Solanum lycopersicum];; (*SWP) sp|Q9ZNU2|NAC18_ARATH (e_value=6e-62) NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1;; (*TAIR) AT3G15510.1 (e_value=8e-77) | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain containing protein 2 | chr3:5243696-5245037 FORWARD LENGTH=364;; (*ITAG) Solyc07g063420.2.1 (e_value=7e-112) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00037055g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|0|0.5|2|0|176; (*GB) gi|31711507|dbj|BAC77634.1| (e_value=5e-83) 24K germin like protein [Nicotiana tabacum];; (*SWP) sp|O04011|ABP20_PRUPE (e_value=1e-56) Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1;; (*TAIR) AT5G20630.1 (e_value=4e-57) | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211;; (*ITAG) Solyc07g041720.1.1 (e_value=4e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51367296-51367931 transcript_region:SL2.40ch07:51367296..51367931+ go_terms:GO:0050162 functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00013933g0004.1 protein AED:0.29 eAED:0.29 QI:45|1|0.8|1|1|0.9|10|0|549; (*GB) gi|255561807|ref|XP_002521913.1| (e_value=0.0) PLE, putative [Ricinus communis];; (*SWP) sp|Q9SIS3|MA656_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1;; (*TAIR) AT2G01910.2 (e_value=0.0) | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated protein (MAP65/ASE1) family protein | chr2:417698-420182 FORWARD LENGTH=567;; (*ITAG) Solyc01g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67325-72180 transcript_region:SL2.40ch01:67325..72180- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** C0J9Z7_ORYNI); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00028871g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc04g005000.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2659-2883 transcript_region:SL2.40ch04:2659..2883- functional_description:"Unknown Protein (AHRD V1)"; NbS00028871g0005.1 protein AED:0.35 eAED:0.35 QI:0|1|0.85|1|0.66|0.85|7|0|326; (*GB) gi|296086505|emb|CBI32094.3| (e_value=4e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|P64956|Y2253_MYCBO (e_value=2e-17) Uncharacterized protein Mb2253c OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1;; (*TAIR) AT1G24090.1 (e_value=1e-88) | Symbols: | RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353;; (*ITAG) Solyc05g006090.2.1 (e_value=6e-180) genomic_reference:SL2.40ch05 gene_region:818986-824063 transcript_region:SL2.40ch05:818986..824063+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- A4TBN9_MYCGI); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00042939g0001.1 protein AED:0.42 eAED:0.82 QI:0|0|0|1|0|0|2|0|70 NbS00004524g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|0|0.5|2|192|376; (*GB) gi|359492937|ref|XP_002283889.2| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=5e-44) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT1G09750.1 (e_value=4e-157) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:3157541-3158960 FORWARD LENGTH=449;; (*ITAG) Solyc12g087940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61882046-61884187 transcript_region:SL2.40ch12:61882046..61884187- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TE66_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00004524g0010.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|385; (*GB) gi|359492482|ref|XP_002283891.2| (e_value=1e-124) PREDICTED: uncharacterized protein LOC100247170 [Vitis vinifera];; (*TAIR) AT1G58120.1 (e_value=2e-96) | Symbols: | BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420;; (*ITAG) Solyc04g076150.2.1 (e_value=2e-164) genomic_reference:SL2.40ch04 gene_region:58692985-58694636 transcript_region:SL2.40ch04:58692985..58694636+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051889g0006.1 protein AED:0.08 eAED:0.09 QI:0|0.8|0.33|1|0.6|0.66|6|0|622; (*GB) gi|225434311|ref|XP_002264896.1| (e_value=0.0) PREDICTED: root phototropism protein 2 [Vitis vinifera];; (*SWP) sp|Q682S0|RPT2_ARATH (e_value=0.0) Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2;; (*TAIR) AT2G30520.1 (e_value=0.0) | Symbols: RPT2 | Phototropic-responsive NPH3 family protein | chr2:13002920-13005573 REVERSE LENGTH=593;; (*ITAG) Solyc07g043130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54046301-54048727 transcript_region:SL2.40ch07:54046301..54048727- go_terms:GO:0005515 functional_description:"Os12g0117400 protein (Fragment) (AHRD V1 **-- Q0IQJ6_ORYSJ); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00057763g0001.1 protein AED:0.10 eAED:0.10 QI:131|1|0.66|1|0.5|0.33|3|0|239; (*GB) gi|225459802|ref|XP_002284814.1| (e_value=2e-38) PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Vitis vinifera];; (*TAIR) AT1G20410.1 (e_value=2e-26) | Symbols: | Pseudouridine synthase family protein | chr1:7079049-7082504 REVERSE LENGTH=504;; (*ITAG) Solyc04g082130.2.1 (e_value=1e-99) genomic_reference:SL2.40ch04 gene_region:63502355-63510359 transcript_region:SL2.40ch04:63502355..63510359- go_terms:GO:0005840 functional_description:"THUMP domain protein (AHRD V1 *--- D7EAV4_METEZ)"; GO:0005840 NbS00020436g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.84|1|1|1|19|365|1117; (*GB) gi|356565000|ref|XP_003550733.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100782006 [Glycine max];; (*TAIR) AT3G17340.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:5920613-5926846 REVERSE LENGTH=1090;; (*ITAG) Solyc01g057520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:54163130-54174043 transcript_region:SL2.40ch01:54163130..54174043+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGD8 (AHRD V1 *--- Q9LUT8_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00047485g0008.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.75|1|1|4|0|1140; (*GB) gi|359487946|ref|XP_002266568.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255461 [Vitis vinifera];; (*SWP) sp|Q9UXR9|DNAJ_METTE (e_value=4e-12) Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1;; (*TAIR) AT3G04980.1 (e_value=8e-91) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1378684-1382181 REVERSE LENGTH=1165;; (*ITAG) Solyc01g098250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80592618-80596242 transcript_region:SL2.40ch01:80592618..80596242+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00047485g0013.1 protein AED:0.06 eAED:0.25 QI:0|0|0|1|0|0.33|3|0|104 NbS00047485g0015.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|0|0.14|7|0|390; (*GB) gi|297745128|emb|CBI38967.3| (e_value=5e-37) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80809|CLV2_ARATH (e_value=3e-24) Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1;; (*TAIR) AT1G74190.1 (e_value=8e-31) | Symbols: AtRLP15, RLP15 | receptor like protein 15 | chr1:27902590-27906158 REVERSE LENGTH=965;; (*ITAG) Solyc04g076450.1.1 (e_value=7e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58926722-58928086 transcript_region:SL2.40ch04:58926722..58928086- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00047485g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|356552972|ref|XP_003544833.1| (e_value=5e-69) PREDICTED: uncharacterized protein LOC100809739 [Glycine max];; (*TAIR) AT5G65520.1 (e_value=3e-46) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26189876-26190496 REVERSE LENGTH=206;; (*ITAG) Solyc04g076470.1.1 (e_value=1e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:58931752-58932414 transcript_region:SL2.40ch04:58931752..58932414- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B8IUJ2_METNO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011830g0001.1 protein AED:0.49 eAED:0.49 QI:243|0|0.33|0.33|1|1|3|0|89 NbS00001366g0004.1 protein AED:0.04 eAED:0.04 QI:268|1|1|1|0.88|0.8|10|315|775; (*GB) gi|224072264|ref|XP_002303679.1| (e_value=4e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=2e-49) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=1e-50) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc08g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62753443-62757209 transcript_region:SL2.40ch08:62753443..62757209+ functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *-*- Y1462_ARATH)"; NbS00011371g0003.1 protein AED:0.06 eAED:0.06 QI:27|0.75|0.8|1|0.75|0.6|5|743|136; (*GB) gi|1762945|gb|AAC49975.1| (e_value=2e-46) ORF; able to induce HR-like lesions [Nicotiana tabacum];; (*TAIR) AT4G14420.1 (e_value=4e-39) | Symbols: | HR-like lesion-inducing protein-related | chr4:8302171-8303738 REVERSE LENGTH=158;; (*ITAG) Solyc03g005470.2.1 (e_value=3e-47) genomic_reference:SL2.40ch03 gene_region:366040-369863 transcript_region:SL2.40ch03:366040..369863+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6T757_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00011371g0023.1 protein AED:0.07 eAED:0.07 QI:0|0.83|0.71|1|0.5|0.71|7|0|355; (*GB) gi|225433049|ref|XP_002280977.1| (e_value=3e-159) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-56) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G08290.1 (e_value=7e-64) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:5239088-5240861 FORWARD LENGTH=384;; (*ITAG) Solyc03g005480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:373917-377991 transcript_region:SL2.40ch03:373917..377991+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- B6TRP3_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00011371g0021.1 protein AED:0.10 eAED:0.10 QI:41|0.85|0.75|0.87|0.71|0.62|8|515|321; (*GB) gi|379067353|gb|AFC90090.1| (e_value=0.0) brix domain-containing protein [Nicotiana benthamiana];; (*SWP) sp|Q9AWM9|RPF2_ORYSJ (e_value=3e-147) Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1;; (*TAIR) AT3G23620.1 (e_value=4e-144) | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:8480147-8481873 FORWARD LENGTH=314;; (*ITAG) Solyc10g083600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62706418-62710849 transcript_region:SL2.40ch10:62706418..62710849+ go_terms:GO:0008097 functional_description:"Ribosome production factor 2 homolog (AHRD V1 **-- RPF2_ORYSJ); contains Interpro domain(s) IPR007109 Brix domain "; GO:0008097 NbS00011371g0006.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|310892572|gb|ADP37428.1| (e_value=5e-25) ethylene-responsive-element-binding factor 13 [Petunia x hybrida];; (*SWP) sp|Q9LTC6|ERF95_ARATH (e_value=1e-21) Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1;; (*TAIR) AT3G23220.1 (e_value=1e-22) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8287969-8288388 FORWARD LENGTH=139;; (*ITAG) Solyc03g005500.1.1 (e_value=8e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:383586-383975 transcript_region:SL2.40ch03:383586..383975+ go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 14 (AHRD V1 **** ERF97_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00011371g0024.1 protein AED:0.51 eAED:0.52 QI:0|0.22|0.2|0.7|0.44|0.6|10|0|377; (*GB) gi|350534622|ref|NP_001234662.1| (e_value=8e-165) ethylene-inducible CTR1-like protein kinase [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=9e-104) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=7e-105) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc10g083610.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00026456g0003.1 protein AED:0.20 eAED:0.20 QI:110|1|1|1|0.75|0.6|5|210|197; (*GB) gi|82623405|gb|ABB87117.1| (e_value=2e-106) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=6e-97) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT5G10360.1 (e_value=6e-98) | Symbols: EMB3010, RPS6B | Ribosomal protein S6e | chr5:3258734-3260142 REVERSE LENGTH=249;; (*ITAG) Solyc08g074240.2.1 (e_value=9e-109) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00029182g0004.1 protein AED:0.67 eAED:0.67 QI:19|1|0|1|1|1|2|0|69 NbS00041119g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|296084381|emb|CBI24769.3| (e_value=2e-134) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57500.1 (e_value=9e-105) | Symbols: | Galactosyltransferase family protein | chr5:23286406-23287525 REVERSE LENGTH=318;; (*ITAG) Solyc07g044820.1.1 (e_value=3e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55193162-55194049 transcript_region:SL2.40ch07:55193162..55194049+ go_terms:GO:0016020,GO:0006810 functional_description:"Beta-1 3-galactosyltransferase pvg3 (AHRD V1 **-- B6JXP2_SCHJY); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0006810 NbS00032813g0006.1 protein AED:0.04 eAED:0.06 QI:47|0.66|0.25|1|0.66|0.75|4|110|590; (*GB) gi|224089917|ref|XP_002308865.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX20|PTR18_ARATH (e_value=0.0) Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1;; (*TAIR) AT1G68570.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:25746811-25750110 FORWARD LENGTH=596;; (*ITAG) Solyc05g009500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3668010-3672604 transcript_region:SL2.40ch05:3668010..3672604- go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00008756g0005.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|1|4|362|290; (*GB) gi|363814437|ref|NP_001242853.1| (e_value=1e-41) uncharacterized protein LOC100801269 precursor [Glycine max];; (*SWP) sp|Q9SD84|E13L3_ARATH (e_value=3e-26) Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1;; (*TAIR) AT1G18650.1 (e_value=1e-34) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc04g005420.2.1 (e_value=3e-57) genomic_reference:SL2.40ch04 gene_region:290581-296842 transcript_region:SL2.40ch04:290581..296842- functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 *-*- B6UAN6_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00008756g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.4|0.6|0.75|0.6|5|123|59; (*GB) gi|297738077|emb|CBI27278.3| (e_value=3e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G26470.1 (e_value=2e-14) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155134-9156036 FORWARD LENGTH=133;; (*ITAG) Solyc05g012400.2.1 (e_value=3e-16) genomic_reference:SL2.40ch05 gene_region:5654506-5656999 transcript_region:SL2.40ch05:5654506..5656999+ go_terms:GO:0043189 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012423 CT20 "; GO:0043189 NbS00008756g0111.1 protein AED:0.17 eAED:0.29 QI:69|0|0.33|1|0|0.33|3|169|343 NbS00008756g0112.1 protein AED:0.17 eAED:0.17 QI:350|1|1|1|0|0.5|2|236|393 NbS00008756g0104.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|182 NbS00008756g0114.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|2|0|1040 NbS00061543g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|5852154|emb|CAB55501.1| (e_value=4e-163) tyramine hydroxycinnamoyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=1e-164) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39030.1 (e_value=6e-49) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16298260-16298946 FORWARD LENGTH=228;; (*ITAG) Solyc08g006730.1.1 (e_value=3e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1285638-1286318 transcript_region:SL2.40ch08:1285638..1286318+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00037958g0004.1 protein AED:0.15 eAED:0.23 QI:0|0.33|0.25|1|1|1|4|4|1027; (*GB) gi|224071403|ref|XP_002303443.1| (e_value=4e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT2G35540.1 (e_value=2e-58) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:14927158-14928930 FORWARD LENGTH=590;; (*ITAG) Solyc08g005300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:229428-232250 transcript_region:SL2.40ch08:229428..232250+ go_terms:GO:0006508,GO:0006457,GO:0031072 functional_description:"Chaperone DnaJ (AHRD V1 *-*- A8URH8_9AQUI); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006508,GO:0006457,GO:0031072 NbS00025807g0004.1 protein AED:0.14 eAED:0.16 QI:1560|0.57|0.62|1|0.57|0.62|8|168|345; (*GB) gi|225434243|ref|XP_002280371.1| (e_value=4e-138) PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=3e-119) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.2 (e_value=2e-120) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547;; (*ITAG) Solyc12g017920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7785524-7801666 transcript_region:SL2.40ch12:7785524..7801666- go_terms:GO:0004649 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-** Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0004649 NbS00020239g0003.1 protein AED:0.21 eAED:0.21 QI:241|0.7|0.81|0.90|0.3|0.54|11|266|589; (*GB) gi|297746278|emb|CBI16334.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VYY5|NCRK_ARATH (e_value=7e-170) Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana GN=NCRK PE=1 SV=1;; (*TAIR) AT2G28250.2 (e_value=6e-171) | Symbols: NCRK | Protein kinase superfamily protein | chr2:12044004-12046339 FORWARD LENGTH=565;; (*ITAG) Solyc11g069590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51305442-51307901 transcript_region:SL2.40ch11:51305442..51307901- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00046740g0003.1 protein AED:0.19 eAED:0.21 QI:158|0.88|0.9|1|0.66|0.7|10|265|401; (*GB) gi|7705214|gb|AAB33480.2| (e_value=0.0) alcohol dehydrogenase ADH [Solanum lycopersicum];; (*SWP) sp|Q9FH04|ADHL7_ARATH (e_value=0.0) Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1;; (*TAIR) AT5G42250.1 (e_value=0.0) | Symbols: | Zinc-binding alcohol dehydrogenase family protein | chr5:16894087-16897450 FORWARD LENGTH=390;; (*ITAG) Solyc12g094500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63068119-63071688 transcript_region:SL2.40ch12:63068119..63071688+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase 1 (AHRD V1 ***- B6TD57_MAIZE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00026584g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|224053739|ref|XP_002297955.1| (e_value=6e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=4e-55) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=3e-56) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc08g008520.2.1 (e_value=2e-63) genomic_reference:SL2.40ch08 gene_region:2920289-2922665 transcript_region:SL2.40ch08:2920289..2922665- go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00026584g0010.1 protein AED:0.18 eAED:0.19 QI:0|0.2|0|1|0.4|0.33|6|0|1588; (*GB) gi|54261825|gb|AAV31175.1| (e_value=0.0) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=8e-98) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT5G48620.1 (e_value=2e-63) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc08g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00026584g0001.1 protein AED:0.11 eAED:0.11 QI:773|0.8|0.83|1|1|1|6|334|545; (*GB) gi|359474135|ref|XP_002273005.2| (e_value=2e-179) PREDICTED: serine/threonine-protein kinase WNK8-like [Vitis vinifera];; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=5e-164) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT5G41990.1 (e_value=5e-161) | Symbols: WNK8, ATWNK8 | with no lysine (K) kinase 8 | chr5:16795085-16797562 REVERSE LENGTH=563;; (*ITAG) Solyc08g082980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62771972-62775303 transcript_region:SL2.40ch08:62771972..62775303+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00000805g0007.1 protein AED:0.28 eAED:0.29 QI:21|0.83|0.85|1|0.83|0.71|7|520|208; (*GB) gi|77403675|dbj|BAE46416.1| (e_value=6e-87) TATA binding protein associated factor [Solanum tuberosum];; (*SWP) sp|Q8VE65|TAF12_MOUSE (e_value=4e-30) Transcription initiation factor TFIID subunit 12 OS=Mus musculus GN=Taf12 PE=1 SV=1;; (*TAIR) AT1G17440.2 (e_value=2e-52) | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683;; (*ITAG) Solyc03g122020.2.1 (e_value=3e-88) genomic_reference:SL2.40ch03 gene_region:64066411-64074975 transcript_region:SL2.40ch03:64066411..64074975+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- B5X4I7_SALSA); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00000805g0105.1 protein AED:0.15 eAED:0.40 QI:7|0|0|1|0|0|2|0|120 NbS00000805g0216.1 protein AED:0.10 eAED:0.12 QI:240|1|0.8|1|0.66|0.5|10|0|674 NbS00000805g0217.1 protein AED:0.33 eAED:0.39 QI:25|0.85|0.62|1|0.71|0.75|8|0|344 NbS00034479g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.87|1|0.42|0.5|8|495|417; (*GB) gi|225457899|ref|XP_002279381.1| (e_value=3e-150) PREDICTED: GDSL esterase/lipase EXL3 [Vitis vinifera];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=2e-127) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=1e-128) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc12g089350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62923331-62926988 transcript_region:SL2.40ch12:62923331..62926988+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00034479g0008.1 protein AED:0.23 eAED:0.23 QI:148|1|0.75|1|0.66|0.5|4|242|358; (*GB) gi|302142681|emb|CBI19884.3| (e_value=6e-119) unnamed protein product [Vitis vinifera];; (*SWP) sp|P50699|TLPH_ARATH (e_value=1e-72) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT4G24180.1 (e_value=4e-110) | Symbols: TLP1, ATTLP1 | THAUMATIN-LIKE PROTEIN 1 | chr4:12550356-12551221 REVERSE LENGTH=260;; (*ITAG) Solyc04g081560.2.1 (e_value=7e-160) genomic_reference:SL2.40ch04 gene_region:63105875-63108460 transcript_region:SL2.40ch04:63105875..63108460+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00034479g0015.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|1|1|4|0|320; (*GB) gi|225459726|ref|XP_002285892.1| (e_value=1e-169) PREDICTED: peroxidase 64-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q43872|PER64_ARATH (e_value=6e-162) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=5e-163) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc12g089370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62930211-62931423 transcript_region:SL2.40ch12:62930211..62931423- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- B9GQQ9_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00044392g0001.1 protein AED:0.23 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|322; (*ITAG) Solyc03g119560.1.1 (e_value=8e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62180501-62181241 transcript_region:SL2.40ch03:62180501..62181241+ functional_description:"B3 domain-containing protein At1g05920 (AHRD V1 *-*- Y1592_ARATH); contains Interpro domain(s) IPR005508 Protein of unknown function DUF313 "; NbS00046081g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.5|1|0.66|0.5|4|288|357; (*GB) gi|225441110|ref|XP_002265059.1| (e_value=6e-164) PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase-like [Vitis vinifera];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=2e-50) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT2G36690.1 (e_value=2e-143) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc09g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2048866-2052899 transcript_region:SL2.40ch09:2048866..2052899+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbC24523087g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|193290730|gb|ACF17673.1| (e_value=2e-83) putative S-adenosylmethionine synthetase [Capsicum annuum];; (*SWP) sp|A9PHC5|METK4_POPTR (e_value=3e-84) S-adenosylmethionine synthase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1;; (*TAIR) AT3G17390.1 (e_value=2e-81) | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine synthetase family protein | chr3:5952484-5953665 REVERSE LENGTH=393;; (*ITAG) Solyc09g008280.1.1 (e_value=2e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1749950-1751122 transcript_region:SL2.40ch09:1749950..1751122+ go_terms:GO:0004478,GO:0005507 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0004478,GO:0005507 NbS00003795g0005.1 protein AED:0.02 eAED:0.02 QI:78|1|1|1|1|1|6|157|351; (*GB) gi|302143935|emb|CBI23040.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNE9|ATXR6_ARATH (e_value=4e-160) Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana GN=ATXR6 PE=2 SV=1;; (*TAIR) AT5G24330.1 (e_value=3e-161) | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349;; (*ITAG) Solyc03g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46291731-46294839 transcript_region:SL2.40ch03:46291731..46294839+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 **-- D8L815_9POAL); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003677 NbS00053507g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|439|637; (*GB) gi|225425880|ref|XP_002270297.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242500 [Vitis vinifera];; (*TAIR) AT3G01750.1 (e_value=4e-167) | Symbols: | Ankyrin repeat family protein | chr3:270615-272691 FORWARD LENGTH=664;; (*ITAG) Solyc05g014510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8364905-8369254 transcript_region:SL2.40ch05:8364905..8369254+ go_terms:GO:0008381 functional_description:"Ankyrin repeat domain-containing protein 44 (AHRD V1 *--- A8N4H2_COPC7); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00038996g0016.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|0.25|0|5|0|523; (*GB) gi|359483597|ref|XP_002272690.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g46460, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FHF9|PP419_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1;; (*TAIR) AT5G46460.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:18840305-18842398 FORWARD LENGTH=697;; (*ITAG) Solyc02g071300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35364145-35366211 transcript_region:SL2.40ch02:35364145..35366211- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038996g0002.1 protein AED:0.16 eAED:0.23 QI:0|0|0|0.75|1|1|4|0|394; (*ITAG) Solyc02g071320.2.1 (e_value=4e-109) genomic_reference:SL2.40ch02 gene_region:35370359-35375355 transcript_region:SL2.40ch02:35370359..35375355- functional_description:"Unknown Protein (AHRD V1)"; NbS00038996g0015.1 protein AED:0.08 eAED:0.08 QI:20|1|1|1|0.88|0.9|10|438|707; (*GB) gi|255557441|ref|XP_002519751.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B7K5W1|RIMM_CYAP8 (e_value=7e-37) Ribosome maturation factor RimM OS=Cyanothece sp. (strain PCC 8801) GN=rimM PE=3 SV=1;; (*TAIR) AT5G46420.1 (e_value=0.0) | Symbols: | 16S rRNA processing protein RimM family | chr5:18829999-18832893 FORWARD LENGTH=653;; (*ITAG) Solyc02g071280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35345284-35355314 transcript_region:SL2.40ch02:35345284..35355314+ go_terms:GO:0005840,GO:0008152,GO:0006364 functional_description:"Ribosome maturation factor rimM (AHRD V1 *-*- A4CTC3_SYNPV); contains Interpro domain(s) IPR011961 16S rRNA processing protein RimM "; GO:0005840,GO:0008152,GO:0006364 NbS00038996g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.75|1|1|1|4|418|145; (*GB) gi|255557447|ref|XP_002519754.1| (e_value=2e-73) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46530.1 (e_value=3e-66) | Symbols: | AWPM-19-like family protein | chr5:18875576-18876779 FORWARD LENGTH=157;; (*ITAG) Solyc02g071310.2.1 (e_value=3e-84) genomic_reference:SL2.40ch02 gene_region:35368618-35369907 transcript_region:SL2.40ch02:35368618..35369907+ functional_description:"Plasma membrane associated protein (AHRD V1 ***- B4FLA8_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00038996g0005.1 protein AED:0.35 eAED:0.35 QI:73|1|1|1|0.66|0.5|4|317|133; (*GB) gi|255585616|ref|XP_002533495.1| (e_value=7e-84) 60S ribosomal protein L32, putative [Ricinus communis];; (*SWP) sp|P49211|RL321_ARATH (e_value=7e-79) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=5e-80) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc08g006900.2.1 (e_value=4e-81) genomic_reference:SL2.40ch08 gene_region:1461250-1464221 transcript_region:SL2.40ch08:1461250..1464221- go_terms:GO:0005840 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR001515 Ribosomal protein L32e "; GO:0005840 NbS00038996g0017.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.33|0|0|3|0|67 NbS00013150g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|391; (*GB) gi|225433768|ref|XP_002268142.1| (e_value=0.0) PREDICTED: galactolipase DONGLE, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9MA46|PLA12_ARATH (e_value=7e-166) Galactolipase DONGLE, chloroplastic OS=Arabidopsis thaliana GN=DGL PE=1 SV=1;; (*TAIR) AT1G05800.1 (e_value=5e-167) | Symbols: DGL | alpha/beta-Hydrolases superfamily protein | chr1:1741204-1742619 FORWARD LENGTH=471;; (*ITAG) Solyc12g098730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64482920-64484311 transcript_region:SL2.40ch12:64482920..64484311+ go_terms:GO:0006629,GO:0016021 functional_description:"Lipase (Fragment) (AHRD V1 **-- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629,GO:0016021 NbS00035414g0005.1 protein AED:0.02 eAED:0.02 QI:509|1|1|1|0.42|0.5|8|470|477; (*GB) gi|224133786|ref|XP_002327680.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G75420.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:28305469-28307317 FORWARD LENGTH=463;; (*ITAG) Solyc02g084820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42488981-42494223 transcript_region:SL2.40ch02:42488981..42494223+ go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** B5WGB2_9BURK); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00017399g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.2|1|1|1|5|0|372; (*GB) gi|399212|sp|P31541.1|CLPAA_SOLLC (e_value=0.0) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic; Flags: Precursor;; (*SWP) sp|P31541|CLPAA_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc03g118340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61298619-61303516 transcript_region:SL2.40ch03:61298619..61303516- go_terms:GO:0004176 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0004176 NbS00017399g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|79 NbS00017399g0019.1 protein AED:0.10 eAED:0.10 QI:201|0.87|1|1|0.75|0.77|9|823|844; (*GB) gi|225456469|ref|XP_002280806.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242176 [Vitis vinifera];; (*SWP) sp|Q75QN6|PHS1_ARATH (e_value=0.0) Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1;; (*TAIR) AT5G23720.3 (e_value=0.0) | Symbols: PHS1 | dual specificity protein phosphatase family protein | chr5:7998506-8002594 FORWARD LENGTH=920;; (*ITAG) Solyc03g118350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61305752-61313365 transcript_region:SL2.40ch03:61305752..61313365- go_terms:GO:0005515,GO:0004721 functional_description:"Dual specificity protein phosphatase (AHRD V1 *-** D7L3D2_ARALY); contains Interpro domain(s) IPR015275 Actin-fragmin kinase, catalytic "; GO:0005515,GO:0004721 NbS00017399g0020.1 protein AED:0.20 eAED:0.20 QI:0|1|0.90|1|0.7|0.72|11|204|436; (*GB) gi|147852932|emb|CAN81275.1| (e_value=0.0) hypothetical protein VITISV_021177 [Vitis vinifera];; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=0.0) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1;; (*TAIR) AT1G28110.2 (e_value=0.0) | Symbols: SCPL45 | serine carboxypeptidase-like 45 | chr1:9804153-9806832 REVERSE LENGTH=461;; (*ITAG) Solyc03g118370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61318884-61322274 transcript_region:SL2.40ch03:61318884..61322274- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TKD2_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00017399g0022.1 protein AED:0.20 eAED:0.21 QI:7|0.66|0.6|1|0.55|0.6|10|0|906; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=0.0) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbC24412117g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|238007596|gb|ACR34833.1| (e_value=2e-85) unknown [Zea mays];; (*SWP) sp|O57683|SF3B1_XENLA (e_value=2e-59) Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1;; (*TAIR) AT5G64270.1 (e_value=6e-80) | Symbols: | splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269;; (*ITAG) Solyc10g081090.1.1 (e_value=5e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61572434-61572817 transcript_region:SL2.40ch10:61572434..61572817+ go_terms:GO:0005488 functional_description:"Splicing factor 3B subunit 1 (AHRD V1 **-- B3RQX5_TRIAD); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00022658g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=1e-53) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-38) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=2e-42) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc10g018320.1.1 (e_value=3e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7324490-7325110 transcript_region:SL2.40ch10:7324490..7325110+ go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00032436g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.57|0.37|0.75|0.85|0.87|8|348|430; (*GB) gi|359484305|ref|XP_002279464.2| (e_value=0.0) PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZUP2|RECA3_ARATH (e_value=0.0) DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2;; (*TAIR) AT2G19490.1 (e_value=0.0) | Symbols: | recA DNA recombination family protein | chr2:8441732-8444006 FORWARD LENGTH=430;; (*ITAG) Solyc05g055780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64430011-64433675 transcript_region:SL2.40ch05:64430011..64433675- go_terms:GO:0003677 functional_description:"Protein recA (AHRD V1 ***- D1KB24_9GAMM); contains Interpro domain(s) IPR013765 RecA "; GO:0003677 NbS00037287g0001.1 protein AED:0.20 eAED:0.20 QI:547|0.85|0.87|1|0.71|0.62|8|90|143; (*GB) gi|224114948|ref|XP_002316900.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53000.1 (e_value=9e-62) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=7e-65) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00037287g0005.1 protein AED:0.00 eAED:0.00 QI:344|1|1|1|1|1|2|182|143; (*GB) gi|224128346|ref|XP_002329139.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT1G23220.1 (e_value=1e-24) | Symbols: | Dynein light chain type 1 family protein | chr1:8242614-8244136 FORWARD LENGTH=129;; (*ITAG) Solyc07g063180.2.1 (e_value=3e-70) genomic_reference:SL2.40ch07 gene_region:62952764-62953538 transcript_region:SL2.40ch07:62952764..62953538- go_terms:GO:0042803 functional_description:"Cytoplasmic dynein light chain (AHRD V1 *-*- D3BU56_POLPA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00054849g0003.1 protein AED:0.01 eAED:0.01 QI:110|1|1|1|1|1|3|264|154; (*GB) gi|388500462|gb|AFK38297.1| (e_value=3e-48) unknown [Lotus japonicus];; (*TAIR) AT4G27660.1 (e_value=2e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr4:13817249-13818027 REVERSE LENGTH=182;; (*ITAG) Solyc03g080170.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:45601283-45603581 transcript_region:SL2.40ch03:45601283..45603581- functional_description:"Genomic DNA chromosome 5 TAC clone K18G13 (AHRD V1 ***- Q9FK26_ARATH)"; NbS00044197g0010.1 protein AED:0.10 eAED:0.10 QI:399|1|1|1|0|0.5|2|444|202; (*GB) gi|357478385|ref|XP_003609478.1| (e_value=6e-91) hypothetical protein MTR_4g116130 [Medicago truncatula];; (*TAIR) AT2G11890.1 (e_value=3e-68) | Symbols: | adenylate cyclases | chr2:4802999-4803631 FORWARD LENGTH=210;; (*ITAG) Solyc07g007510.2.1 (e_value=4e-129) genomic_reference:SL2.40ch07 gene_region:2201137-2203356 transcript_region:SL2.40ch07:2201137..2203356- go_terms:GO:0006171 functional_description:"Adenylate cyclase (AHRD V1 ***- D7LB43_ARALY); contains Interpro domain(s) IPR008172 Adenylate cyclase "; GO:0006171 NbS00044197g0009.1 protein AED:0.17 eAED:0.17 QI:689|1|1|1|1|1|2|313|180; (*GB) gi|357479731|ref|XP_003610151.1| (e_value=4e-11) hypothetical protein MTR_4g128540 [Medicago truncatula];; (*ITAG) Solyc10g049530.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00053103g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|357462989|ref|XP_003601776.1| (e_value=9e-123) hypothetical protein MTR_3g085270 [Medicago truncatula];; (*TAIR) AT1G27930.1 (e_value=3e-106) | Symbols: | Protein of unknown function (DUF579) | chr1:9731510-9732379 REVERSE LENGTH=289;; (*ITAG) Solyc07g015920.1.1 (e_value=6e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:5724407-5725234 transcript_region:SL2.40ch07:5724407..5725234- go_terms:GO:0005515 functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV43_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; GO:0005515 NbS00009046g0006.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|0|0|2|0|186; (*GB) gi|77999307|gb|ABB17000.1| (e_value=2e-45) ribosomal protein L23 family protein [Solanum tuberosum];; (*TAIR) AT4G39880.1 (e_value=8e-32) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:18504601-18505137 FORWARD LENGTH=178;; (*ITAG) Solyc11g011140.1.1 (e_value=2e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4216693-4218319 transcript_region:SL2.40ch11:4216693..4218319- go_terms:GO:0005840,GO:0000166 functional_description:"50S ribosomal protein L23 (AHRD V1 *-*- C0N8Z1_9GAMM); contains Interpro domain(s) IPR013025 Ribosomal protein L25/L23 "; GO:0005840,GO:0000166 NbS00044957g0003.1 protein AED:0.02 eAED:0.02 QI:173|1|1|1|0|0|5|480|139; (*GB) gi|225470289|ref|XP_002266561.1| (e_value=2e-65) PREDICTED: protein cornichon homolog 4 [Vitis vinifera];; (*SWP) sp|Q84W04|CNIH4_ARATH (e_value=4e-66) Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1;; (*TAIR) AT1G12390.1 (e_value=3e-67) | Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137;; (*ITAG) Solyc06g060550.2.1 (e_value=1e-82) genomic_reference:SL2.40ch06 gene_region:34948371-34952584 transcript_region:SL2.40ch06:34948371..34952584- go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00005891g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|81 NbS00005891g0007.1 protein AED:0.17 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|79 NbS00005891g0008.1 protein AED:0.29 eAED:0.29 QI:386|0.87|0.88|1|0.5|0.55|9|480|329; (*GB) gi|296086505|emb|CBI32094.3| (e_value=2e-114) unnamed protein product [Vitis vinifera];; (*SWP) sp|P64956|Y2253_MYCBO (e_value=1e-11) Uncharacterized protein Mb2253c OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1;; (*TAIR) AT1G24090.1 (e_value=6e-88) | Symbols: | RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353;; (*ITAG) Solyc05g006090.2.1 (e_value=3e-169) genomic_reference:SL2.40ch05 gene_region:818986-824063 transcript_region:SL2.40ch05:818986..824063+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- A4TBN9_MYCGI); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00012962g0008.1 protein AED:0.02 eAED:0.02 QI:93|0.33|0.5|1|1|1|4|0|628; (*GB) gi|255551070|ref|XP_002516583.1| (e_value=3e-59) hypothetical protein RCOM_0803370 [Ricinus communis];; (*TAIR) AT5G11470.1 (e_value=4e-54) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr5:3662757-3667041 REVERSE LENGTH=757;; (*ITAG) Solyc11g012810.1.1 (e_value=3e-161) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5572669-5592438 transcript_region:SL2.40ch11:5572669..5592438+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012962g0009.1 protein AED:0.64 eAED:0.64 QI:42|0|0|0.4|0.5|0.6|5|0|130; (*ITAG) Solyc11g012810.1.1 (e_value=3e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5572669-5592438 transcript_region:SL2.40ch11:5572669..5592438+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016949g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0.2|1|0.25|0.6|5|0|588; (*GB) gi|359493721|ref|XP_002280717.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63365126-63368777 transcript_region:SL2.40ch07:63365126..63368777- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00016949g0005.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|1|1|2|0|121; (*GB) gi|356514870|ref|XP_003526125.1| (e_value=4e-36) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max];; (*SWP) sp|O81833|SD11_ARATH (e_value=4e-27) G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1;; (*TAIR) AT4G27300.1 (e_value=3e-28) | Symbols: | S-locus lectin protein kinase family protein | chr4:13669308-13672348 REVERSE LENGTH=815;; (*ITAG) Solyc07g063810.1.1 (e_value=5e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63370653-63372900 transcript_region:SL2.40ch07:63370653..63372900+ go_terms:GO:0019199,GO:0004674 functional_description:"ARK2 product/receptor-like serine/threonine protein kinase ARK2 (AHRD V1 *-** Q9S972_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00031624g0002.1 protein AED:0.04 eAED:0.04 QI:469|1|1|1|0.75|0.6|5|207|324; (*GB) gi|21105751|gb|AAM34774.1|AF509874_1 (e_value=1e-161) nam-like protein 11 [Petunia x hybrida];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=1e-55) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT4G17980.1 (e_value=4e-98) | Symbols: anac071, NAC071 | NAC domain containing protein 71 | chr4:9978850-9980038 REVERSE LENGTH=262;; (*ITAG) Solyc08g077110.2.1 (e_value=1e-168) genomic_reference:SL2.40ch08 gene_region:58200673-58202853 transcript_region:SL2.40ch08:58200673..58202853- go_terms:GO:0005515,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N2P7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0005515,GO:0003700 NbS00031624g0019.1 protein AED:0.46 eAED:0.55 QI:0|0.33|0.42|0.85|0.33|0.42|7|0|238; (*GB) gi|225427236|ref|XP_002280752.1| (e_value=2e-80) PREDICTED: uncharacterized protein LOC100254109 [Vitis vinifera];; (*TAIR) AT2G35360.1 (e_value=2e-66) | Symbols: | ubiquitin family protein | chr2:14889311-14890799 REVERSE LENGTH=225;; (*ITAG) Solyc08g007030.2.1 (e_value=3e-115) genomic_reference:SL2.40ch08 gene_region:1596900-1602409 transcript_region:SL2.40ch08:1596900..1602409- functional_description:"Ubiquitin family protein (AHRD V1 ***- D7LHV6_ARALY); contains Interpro domain(s) IPR019387 Domain of unknown function SAYSvFN "; NbS00031624g0022.1 protein AED:0.68 eAED:0.70 QI:79|0|0|0.5|1|0.5|2|0|111 NbS00031624g0005.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.14|1|1|7|0|231; (*ITAG) Solyc08g007050.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1606156-1609642 transcript_region:SL2.40ch08:1606156..1609642- go_terms:GO:0051777,GO:0019825 functional_description:"Cytochrome P450"; GO:0051777,GO:0019825 NbS00031624g0018.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|224126315|ref|XP_002329524.1| (e_value=1e-45) precursor of carboxylase h-protein 3, glycine decarboxylase complex [Populus trichocarpa];; (*SWP) sp|P49359|GCSH_FLAPR (e_value=3e-46) Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1;; (*TAIR) AT1G32470.1 (e_value=9e-44) | Symbols: | Single hybrid motif superfamily protein | chr1:11739479-11740246 REVERSE LENGTH=166;; (*ITAG) Solyc06g061070.2.1 (e_value=1e-54) genomic_reference:SL2.40ch06 gene_region:35488560-35490227 transcript_region:SL2.40ch06:35488560..35490227- go_terms:GO:0004375 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 **** B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0004375 NbS00031624g0021.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|0|0|2|0|63; (*GB) gi|57013977|ref|YP_173449.1| (e_value=8e-20) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00056871g0001.1 protein AED:0.31 eAED:0.31 QI:895|0.78|0.73|1|0.71|0.66|15|0|308; (*GB) gi|255565405|ref|XP_002523693.1| (e_value=2e-127) Transmembrane protein, putative [Ricinus communis];; (*SWP) sp|Q9UPQ8|DOLK_HUMAN (e_value=5e-35) Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1;; (*TAIR) AT3G45040.1 (e_value=8e-125) | Symbols: | phosphatidate cytidylyltransferase family protein | chr3:16472801-16475702 REVERSE LENGTH=569;; (*ITAG) Solyc06g074960.2.1 (e_value=5e-140) genomic_reference:SL2.40ch06 gene_region:42848103-42856556 transcript_region:SL2.40ch06:42848103..42856556- go_terms:GO:0016020 functional_description:"ABC transporter G family member 3 (AHRD V1 *--- AB3G_ARATH); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0016020 NbS00026382g0008.1 protein AED:0.24 eAED:0.32 QI:0|0|0|0.9|0.11|0.2|10|0|514; (*GB) gi|225446942|ref|XP_002267416.1| (e_value=0.0) PREDICTED: pre-mRNA-processing factor 6-like [Vitis vinifera];; (*SWP) sp|O94906|PRP6_HUMAN (e_value=5e-97) Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1;; (*TAIR) AT4G03430.1 (e_value=5e-168) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=1e-162) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00026382g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|202; (*GB) gi|356543817|ref|XP_003540356.1| (e_value=7e-77) PREDICTED: pre-mRNA-processing factor 6-like [Glycine max];; (*SWP) sp|O94906|PRP6_HUMAN (e_value=2e-49) Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1;; (*TAIR) AT4G03430.1 (e_value=3e-69) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=2e-89) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00019788g0009.1 protein AED:0.25 eAED:0.26 QI:281|0.73|0.75|0.93|0.6|0.68|16|0|668; (*GB) gi|359480489|ref|XP_002264408.2| (e_value=0.0) PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Vitis vinifera];; (*SWP) sp|Q54Q92|LMD2A_DICDI (e_value=2e-40) LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1;; (*TAIR) AT5G65290.1 (e_value=0.0) | Symbols: | LMBR1-like membrane protein | chr5:26089814-26094337 FORWARD LENGTH=733;; (*ITAG) Solyc05g051490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60987810-61001742 transcript_region:SL2.40ch05:60987810..61001742- functional_description:"LMBR1 domain protein (AHRD V1 *-*- D4DI29_TRIVH); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00019788g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|89 NbS00019788g0005.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.25|1|1|4|0|231; (*GB) gi|12003402|gb|AAG43558.1|AF211540_1 (e_value=4e-25) Avr9/Cf-9 rapidly elicited protein 75 [Nicotiana tabacum];; (*ITAG) Solyc11g010250.1.1 (e_value=6e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3317088-3317513 transcript_region:SL2.40ch11:3317088..3317513- functional_description:"Avr9/Cf-9 rapidly elicited protein 75 (AHRD V1 ***- Q9FQY9_TOBAC)"; NbS00020271g0006.1 protein AED:0.34 eAED:0.34 QI:282|0.71|0.62|1|0.42|0.62|8|0|570; (*GB) gi|359495503|ref|XP_002273993.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256775 [Vitis vinifera];; (*TAIR) AT5G57580.1 (e_value=0.0) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647;; (*ITAG) Solyc02g079040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38241517-38248511 transcript_region:SL2.40ch02:38241517..38248511+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00006565g0004.1 protein AED:0.56 eAED:0.56 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|332322086|emb|CCA65978.1| (e_value=3e-25) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00006565g0011.1 protein AED:0.24 eAED:0.25 QI:25|0.91|0.88|1|0.94|0.94|35|313|1610; (*GB) gi|384383722|gb|AFH88388.1| (e_value=0.0) alpha-glucan water dikinase [Solanum tuberosum];; (*SWP) sp|Q9AWA5|GWD1_SOLTU (e_value=0.0) Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2;; (*TAIR) AT1G10760.1 (e_value=0.0) | Symbols: SEX1, SOP1, SOP, GWD1, GWD | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | chr1:3581210-3590043 REVERSE LENGTH=1399;; (*ITAG) Solyc05g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32534-50826 transcript_region:SL2.40ch05:32534..50826- go_terms:GO:0050521,GO:0005515 functional_description:"R1 protein alpha-glucan water dikinase (AHRD V1 **** A8I6T5_CHLRE); contains Interpro domain(s) IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding "; GO:0050521,GO:0005515 NbS00027361g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|1|1|2|576|345; (*GB) gi|296084602|emb|CBI25623.3| (e_value=5e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|P36222|CH3L1_HUMAN (e_value=6e-44) Chitinase-3-like protein 1 OS=Homo sapiens GN=CHI3L1 PE=1 SV=2;; (*TAIR) AT4G19810.1 (e_value=6e-78) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:113980-115328 transcript_region:SL2.40ch07:113980..115328- go_terms:GO:0008843 functional_description:"Chitinase A (AHRD V1 ***- Q4W6L6_CYCRE); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008843 NbS00027361g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|353; (*GB) gi|194135605|gb|ACF33482.1| (e_value=1e-20) triblock protein copolymer TP12T precursor [synthetic construct];; (*SWP) sp|A8TX70|CO6A5_HUMAN (e_value=2e-18) Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1;; (*ITAG) Solyc07g005070.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:110963-112153 transcript_region:SL2.40ch07:110963..112153- functional_description:"Collagen alpha-1(IV) chain (AHRD V1 *-*- CO4A1_CAEEL)"; NbS00036848g0006.1 protein AED:0.00 eAED:0.00 QI:359|1|1|1|1|1|2|355|101; (*GB) gi|351720975|ref|NP_001237706.1| (e_value=1e-59) uncharacterized protein LOC100306111 [Glycine max];; (*TAIR) AT4G16450.2 (e_value=2e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. | chr4:9280132-9280541 FORWARD LENGTH=106;; (*ITAG) Solyc07g065280.2.1 (e_value=6e-65) genomic_reference:SL2.40ch07 gene_region:64327845-64329026 transcript_region:SL2.40ch07:64327845..64329026- functional_description:"Os08g0431500 protein (Fragment) (AHRD V1 ***- Q0J5I8_ORYSJ)"; NbS00036848g0009.1 protein AED:0.22 eAED:0.24 QI:0|0.5|0.28|1|0.5|0.28|7|0|661; (*GB) gi|359494165|ref|XP_002274204.2| (e_value=0.0) PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera];; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=5e-140) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=4e-141) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc12g014610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5610112-5616122 transcript_region:SL2.40ch12:5610112..5616122+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 ***- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00050344g0013.1 protein AED:0.10 eAED:0.10 QI:212|0.6|0.66|0.83|0.6|0.66|6|858|193; (*GB) gi|225456735|ref|XP_002275428.1| (e_value=3e-87) PREDICTED: HVA22-like protein a [Vitis vinifera];; (*SWP) sp|Q9S7V4|HA22A_ARATH (e_value=3e-78) HVA22-like protein a OS=Arabidopsis thaliana GN=HVA22A PE=2 SV=1;; (*TAIR) AT1G74520.1 (e_value=2e-79) | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | chr1:28008109-28009156 REVERSE LENGTH=177;; (*ITAG) Solyc03g116350.2.1 (e_value=7e-115) genomic_reference:SL2.40ch03 gene_region:59879752-59882291 transcript_region:SL2.40ch03:59879752..59882291+ go_terms:GO:0031849,GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-* C1C4Y8_RANCA); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0031849,GO:0042802 NbS00050344g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.45|0.81|0.8|0.54|11|23|997; (*GB) gi|359473366|ref|XP_002273996.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250008 [Vitis vinifera];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=1e-49) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc03g116360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59885244-59893377 transcript_region:SL2.40ch03:59885244..59893377+ go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00050344g0015.1 protein AED:0.12 eAED:0.12 QI:118|1|1|1|0.85|1|8|286|267; (*GB) gi|229890016|dbj|BAH58381.1| (e_value=0.0) AtEB1b-like protein [Nicotiana tabacum];; (*SWP) sp|Q9UPY8|MARE3_HUMAN (e_value=2e-52) Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1;; (*TAIR) AT5G62500.1 (e_value=8e-137) | Symbols: ATEB1B, ATEB1, EB1B | end binding protein 1B | chr5:25092929-25095006 FORWARD LENGTH=293;; (*ITAG) Solyc03g116370.2.1 (e_value=2e-174) genomic_reference:SL2.40ch03 gene_region:59895667-59900069 transcript_region:SL2.40ch03:59895667..59900069- go_terms:GO:0051010 functional_description:"Microtubule plus-end binding protein (AHRD V1 **** B2LU37_BRANA); contains Interpro domain(s) IPR001715 Calponin-like actin-binding "; GO:0051010 NbS00060401g0006.1 protein AED:0.11 eAED:0.15 QI:0|0.78|0.73|1|0.57|0.6|15|0|826; (*GB) gi|225454359|ref|XP_002276054.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258534 [Vitis vinifera];; (*SWP) sp|A6NDV4|TMM8B_HUMAN (e_value=5e-11) Transmembrane protein 8B OS=Homo sapiens GN=TMEM8B PE=1 SV=2;; (*TAIR) AT2G46060.1 (e_value=0.0) | Symbols: | transmembrane protein-related | chr2:18941355-18945000 REVERSE LENGTH=807;; (*ITAG) Solyc01g094860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78019473-78027351 transcript_region:SL2.40ch01:78019473..78027351- functional_description:"Transmembrane protein 8B (AHRD V1 *-*- TMM8B_HUMAN)"; NbS00060401g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|3|0|483; (*GB) gi|225454363|ref|XP_002276073.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Vitis vinifera];; (*SWP) sp|O82363|PP203_ARATH (e_value=6e-136) Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1;; (*TAIR) AT2G46050.1 (e_value=4e-137) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:18939262-18941034 FORWARD LENGTH=590;; (*ITAG) Solyc01g094850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78016895-78018703 transcript_region:SL2.40ch01:78016895..78018703+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00039612g0004.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|1|1|3|534|148; (*GB) gi|225431749|ref|XP_002269805.1| (e_value=2e-67) PREDICTED: protein FAM136A [Vitis vinifera];; (*TAIR) AT1G05730.1 (e_value=4e-61) | Symbols: | Eukaryotic protein of unknown function (DUF842) | chr1:1719107-1720159 FORWARD LENGTH=149;; (*ITAG) Solyc08g014300.2.1 (e_value=3e-81) genomic_reference:SL2.40ch08 gene_region:4000950-4003880 transcript_region:SL2.40ch08:4000950..4003880+ go_terms:GO:0005515 functional_description:"FAM136A (AHRD V1 ***- B5XEE9_SALSA); contains Interpro domain(s) IPR008560 Protein of unknown function DUF842, eukaryotic "; GO:0005515 NbS00001306g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.33|1|0.8|0.83|6|0|513; (*GB) gi|225466227|ref|XP_002267333.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258199 [Vitis vinifera];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=6e-58) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT1G65910.1 (e_value=2e-128) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g036430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21468369-21472137 transcript_region:SL2.40ch02:21468369..21472137+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00001306g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.62|0.33|0.77|0.5|0.55|9|0|338; (*GB) gi|359497656|ref|XP_002263924.2| (e_value=7e-154) PREDICTED: ALA-interacting subunit 1, partial [Vitis vinifera];; (*SWP) sp|Q8L8W0|ALIS5_ARATH (e_value=4e-145) ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1;; (*TAIR) AT1G79450.1 (e_value=3e-146) | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:29887831-29889904 FORWARD LENGTH=350;; (*ITAG) Solyc02g036440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21472999-21476904 transcript_region:SL2.40ch02:21472999..21476904- go_terms:GO:0005515,GO:0004970 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515,GO:0004970 NbS00027353g0020.1 protein AED:0.09 eAED:0.09 QI:331|1|1|1|0.2|0.33|6|480|267; (*GB) gi|224117478|ref|XP_002317584.1| (e_value=2e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=4e-61) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT5G54840.1 (e_value=2e-113) | Symbols: ATSGP1, SGP1 | Ras-related small GTP-binding family protein | chr5:22276611-22278328 REVERSE LENGTH=288;; (*ITAG) Solyc07g064290.2.1 (e_value=6e-148) genomic_reference:SL2.40ch07 gene_region:63720022-63724236 transcript_region:SL2.40ch07:63720022..63724236- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-21 (AHRD V1 *-*- C1BQH4_9MAXI); contains Interpro domain(s) IPR013684 Miro-like "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00027353g0027.1 protein AED:0.13 eAED:0.14 QI:0|1|0.6|1|1|0.8|5|0|470; (*GB) gi|57157621|dbj|BAD83779.1| (e_value=0.0) tryptophan synthase beta subunit [Polygonum tinctorium];; (*SWP) sp|O50046|TRPB_CAMAC (e_value=0.0) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1;; (*TAIR) AT5G54810.1 (e_value=0.0) | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan synthase beta-subunit 1 | chr5:22264805-22266738 REVERSE LENGTH=470;; (*ITAG) Solyc10g006400.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1014935-1019360 transcript_region:SL2.40ch10:1014935..1019360+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0004834 NbS00027353g0028.1 protein AED:0.27 eAED:0.27 QI:80|0.85|0.93|1|0.42|0.53|15|30|523; (*GB) gi|359494010|ref|XP_002281589.2| (e_value=0.0) PREDICTED: protein KIAA0415-like [Vitis vinifera];; (*TAIR) AT3G15160.1 (e_value=0.0) | Symbols: | unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr3:5104582-5108279 FORWARD LENGTH=562;; (*ITAG) Solyc10g006410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1020301-1029333 transcript_region:SL2.40ch10:1020301..1029333+ functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 ***- Q9LIL9_ARATH)"; NbS00027353g0025.1 protein AED:0.33 eAED:0.35 QI:16|0|0.5|1|0|0.5|2|0|161; (*GB) gi|147819482|emb|CAN65357.1| (e_value=2e-58) hypothetical protein VITISV_041274 [Vitis vinifera];; (*SWP) sp|Q8VY88|LTD_ARATH (e_value=8e-55) Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana GN=LTD PE=1 SV=1;; (*TAIR) AT1G50900.1 (e_value=6e-56) | Symbols: GDC1 | Ankyrin repeat family protein | chr1:18866272-18867014 FORWARD LENGTH=175;; (*ITAG) Solyc10g006370.2.1 (e_value=2e-86) genomic_reference:SL2.40ch10 gene_region:993392-996694 transcript_region:SL2.40ch10:993392..996694+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00V79_OSTTA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00027353g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|140; (*GB) gi|255563991|ref|XP_002522995.1| (e_value=2e-31) hypothetical protein RCOM_0586940 [Ricinus communis];; (*ITAG) Solyc10g006360.1.1 (e_value=2e-69) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:989509-990009 transcript_region:SL2.40ch10:989509..990009+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027353g0030.1 protein AED:0.09 eAED:0.10 QI:0|0.57|0.62|0.87|0.57|0.37|8|0|515; (*GB) gi|359494019|ref|XP_002278971.2| (e_value=4e-97) PREDICTED: homeobox-leucine zipper protein HDG2-like [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=8e-91) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=6e-92) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc10g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1030078-1033236 transcript_region:SL2.40ch10:1030078..1033236- go_terms:GO:0003700,GO:0043565 functional_description:"Homeobox leucine-zipper protein (AHRD V1 ***- Q8H964_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700,GO:0043565 NbS00027353g0005.1 protein AED:0.30 eAED:0.30 QI:122|0.9|0.90|1|0.6|0.63|11|904|347; (*ITAG) Solyc10g006390.2.1 (e_value=1e-83) genomic_reference:SL2.40ch10 gene_region:1003495-1011281 transcript_region:SL2.40ch10:1003495..1011281- functional_description:"Smad nuclear interacting protein 1 (AHRD V1 *--- B1ASC5_MOUSE); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00006449g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|224135793|ref|XP_002327305.1| (e_value=4e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT4G13530.1 (e_value=2e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7866808-7868555 FORWARD LENGTH=270;; (*ITAG) Solyc07g063050.1.1 (e_value=7e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62863155-62863988 transcript_region:SL2.40ch07:62863155..62863988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009334g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|3|320|165; (*GB) gi|225456169|ref|XP_002282569.1| (e_value=3e-99) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera];; (*SWP) sp|Q8LFN9|AGD13_ARATH (e_value=3e-39) Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1;; (*TAIR) AT3G17980.1 (e_value=4e-95) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc03g118720.2.1 (e_value=2e-114) genomic_reference:SL2.40ch03 gene_region:61614316-61616974 transcript_region:SL2.40ch03:61614316..61616974+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7L7Y3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00009334g0023.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|578; (*GB) gi|350534856|ref|NP_001234163.1| (e_value=0.0) auxin efflux facilitator SlPIN1 [Solanum lycopersicum];; (*SWP) sp|Q9C6B8|PINI_ARATH (e_value=0.0) Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1;; (*TAIR) AT1G73590.1 (e_value=0.0) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622;; (*ITAG) Solyc03g118740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61621010-61624524 transcript_region:SL2.40ch03:61621010..61624524+ go_terms:GO:0005215 functional_description:"Auxin efflux carrier (AHRD V1 ***- Q71T12_MOMCH); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0005215 NbS00009334g0021.1 protein AED:0.19 eAED:0.20 QI:0|0.91|0.92|1|0.91|0.84|13|500|582; (*GB) gi|225456155|ref|XP_002282402.1| (e_value=0.0) PREDICTED: translocon at the outer membrane of chloroplasts 64 [Vitis vinifera];; (*SWP) sp|Q9LVH5|OE64C_ARATH (e_value=0.0) Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1;; (*TAIR) AT3G17970.1 (e_value=0.0) | Symbols: atToc64-III, TOC64-III | translocon at the outer membrane of chloroplasts 64-III | chr3:6148030-6151794 FORWARD LENGTH=589;; (*ITAG) Solyc03g118690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61596849-61604695 transcript_region:SL2.40ch03:61596849..61604695+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00009334g0024.1 protein AED:0.20 eAED:0.20 QI:459|0.5|0.6|0.6|0.75|0.8|5|0|139; (*GB) gi|350537433|ref|NP_001234549.1| (e_value=1e-83) phosphoethanolamine N-methyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9FR44|PEAM1_ARATH (e_value=5e-75) Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=2 SV=1;; (*TAIR) AT3G18000.1 (e_value=4e-76) | Symbols: NMT1, XPL1, PEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491;; (*ITAG) Solyc03g118750.2.1 (e_value=2e-86) genomic_reference:SL2.40ch03 gene_region:61633672-61639223 transcript_region:SL2.40ch03:61633672..61639223+ go_terms:GO:0000234 functional_description:"Phosphoethanolamine N-methyltransferase (AHRD V1 **** Q9AXH3_SOLLC); contains Interpro domain(s) IPR000896 Hemocyanin, copper-containing "; GO:0000234 NbS00009334g0016.1 protein AED:0.30 eAED:0.35 QI:0|0.75|0.4|1|1|1|5|0|531; (*GB) gi|255579265|ref|XP_002530478.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5TEA6|SE1L2_HUMAN (e_value=1e-62) Protein sel-1 homolog 2 OS=Homo sapiens GN=SEL1L2 PE=1 SV=2;; (*TAIR) AT1G18260.1 (e_value=0.0) | Symbols: | HCP-like superfamily protein | chr1:6279047-6282008 REVERSE LENGTH=678;; (*ITAG) Solyc03g118670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61583911-61590920 transcript_region:SL2.40ch03:61583911..61590920+ go_terms:GO:0005515 functional_description:"Protein sel-1 homolog 2 (AHRD V1 **-- SE1L2_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00009334g0009.1 protein AED:0.46 eAED:0.89 QI:0|0|0|1|1|1|4|0|112 NbS00009334g0036.1 protein AED:0.11 eAED:0.11 QI:86|1|0.85|1|0.83|1|7|353|432; (*GB) gi|304366051|gb|ADM26560.1| (e_value=0.0) nuclear localized protein 1 [Nicotiana benthamiana];; (*TAIR) AT1G48580.1 (e_value=3e-40) | Symbols: | unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:17958403-17960610 REVERSE LENGTH=454;; (*ITAG) Solyc03g118700.2.1 (e_value=4e-155) genomic_reference:SL2.40ch03 gene_region:61604850-61608020 transcript_region:SL2.40ch03:61604850..61608020- functional_description:"cDNA FLJ75470 (AHRD V1 *-*- A8K7A9_HUMAN)"; NbS00009334g0026.1 protein AED:0.27 eAED:0.27 QI:175|0.71|0.87|1|0.71|0.87|8|288|472; (*GB) gi|359491033|ref|XP_002278671.2| (e_value=6e-154) PREDICTED: zinc finger protein VAR3, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=3e-31) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT1G48570.1 (e_value=2e-134) | Symbols: | zinc finger (Ran-binding) family protein | chr1:17955455-17957661 REVERSE LENGTH=455;; (*ITAG) Solyc03g118680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61591314-61595702 transcript_region:SL2.40ch03:61591314..61595702- go_terms:GO:0005488 functional_description:"Zinc finger protein (AHRD V1 *--- B6SYQ8_MAIZE); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00009334g0002.1 protein AED:0.48 eAED:0.58 QI:257|0|0|0.66|1|1|3|0|88 NbS00008969g0003.1 protein AED:0.20 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|123; (*ITAG) Solyc06g051220.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30915454-30915834 transcript_region:SL2.40ch06:30915454..30915834- functional_description:"Unknown Protein (AHRD V1)"; NbS00008969g0005.1 protein AED:0.63 eAED:0.82 QI:80|0|0|1|1|1|2|19|27 NbS00028962g0012.1 protein AED:0.04 eAED:0.04 QI:24|1|1|1|0|0.5|2|15|245; (*GB) gi|359481759|ref|XP_003632671.1| (e_value=9e-132) PREDICTED: thaumatin-like protein-like [Vitis vinifera];; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=3e-94) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT5G02140.1 (e_value=1e-120) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:423384-424437 FORWARD LENGTH=294;; (*ITAG) Solyc10g084840.1.1 (e_value=3e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63557692-63558575 transcript_region:SL2.40ch10:63557692..63558575- functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9LZL8_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00028962g0006.1 protein AED:0.00 eAED:0.00 QI:404|1|1|1|1|1|2|295|109 NbS00028962g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|1|0.87|8|0|468; (*GB) gi|297806151|ref|XP_002870959.1| (e_value=7e-151) amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P47082|AVT1_YEAST (e_value=1e-31) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT5G02180.1 (e_value=4e-152) | Symbols: | Transmembrane amino acid transporter family protein | chr5:431034-433544 FORWARD LENGTH=550;; (*ITAG) Solyc10g084830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63549984-63554014 transcript_region:SL2.40ch10:63549984..63554014- functional_description:"Amino acid transporter (AHRD V1 ***- B9IFW4_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00028962g0002.1 protein AED:0.26 eAED:0.32 QI:363|0|0.25|0.5|1|1|4|0|88 NbS00039246g0007.1 protein AED:0.40 eAED:0.45 QI:15|0.5|0.4|1|0|0.4|5|318|160; (*GB) gi|356544502|ref|XP_003540689.1| (e_value=1e-12) PREDICTED: uncharacterized protein LOC100793232 [Glycine max];; (*ITAG) Solyc06g073160.2.1 (e_value=1e-54) genomic_reference:SL2.40ch06 gene_region:41461216-41466739 transcript_region:SL2.40ch06:41461216..41466739- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 *-*- Q9FM45_ARATH)"; NbS00039246g0005.1 protein AED:0.61 eAED:0.61 QI:242|0|0.16|0.16|1|1|6|0|261; (*GB) gi|357466999|ref|XP_003603784.1| (e_value=6e-24) Subtilisin-like serine protease [Medicago truncatula];; (*TAIR) AT1G20160.1 (e_value=8e-19) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc01g006660.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1249071-1255565 transcript_region:SL2.40ch01:1249071..1255565- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8LAE1_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00006687g0012.1 protein AED:0.26 eAED:0.26 QI:210|0.83|0.85|1|0.66|0.85|7|351|252; (*GB) gi|255579735|ref|XP_002530706.1| (e_value=3e-96) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2P7|PAP9_ARATH (e_value=9e-89) Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thaliana GN=PAP9 PE=1 SV=1;; (*TAIR) AT3G58010.1 (e_value=7e-90) | Symbols: PGL34 | plastoglobulin 34kD | chr3:21475949-21477463 REVERSE LENGTH=308;; (*ITAG) Solyc03g062790.2.1 (e_value=8e-127) genomic_reference:SL2.40ch03 gene_region:29619693-29634138 transcript_region:SL2.40ch03:29619693..29634138- functional_description:"cDNA clone 002-130-C06 full insert sequence (AHRD V1 **-- B7F0E5_ORYSJ)"; NbS00008022g0007.1 protein AED:0.23 eAED:0.23 QI:359|0.9|0.85|1|0.75|0.80|21|482|1047; (*GB) gi|171854675|dbj|BAG16527.1| (e_value=0.0) putative aconitase [Capsicum chinense];; (*SWP) sp|P49608|ACOC_CUCMA (e_value=0.0) Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1;; (*TAIR) AT2G05710.1 (e_value=0.0) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc07g052350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbS00008022g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.4|1|1|5|0|164 NbS00008022g0001.1 protein AED:0.53 eAED:0.53 QI:371|1|0.5|1|0|0|2|0|90 NbS00029871g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|268|102; (*GB) gi|225427308|ref|XP_002282023.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100253981 [Vitis vinifera];; (*TAIR) AT3G59840.1 (e_value=5e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22105853-22106146 REVERSE LENGTH=97;; (*ITAG) Solyc08g077280.1.1 (e_value=1e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:58361375-58361683 transcript_region:SL2.40ch08:58361375..58361683- functional_description:"Allyl alcohol dehydrogenase-like protein (AHRD V1 ***- Q9M1Z0_ARATH)"; NbS00029871g0007.1 protein AED:0.13 eAED:0.13 QI:14|1|1|1|0.75|0.66|9|280|589; (*GB) gi|225427304|ref|XP_002281987.1| (e_value=0.0) PREDICTED: phosphoacetylglucosamine mutase isoform 1 [Vitis vinifera];; (*SWP) sp|P57750|AGM1_ARATH (e_value=0.0) Phosphoacetylglucosamine mutase OS=Arabidopsis thaliana GN=DRT101 PE=1 SV=1;; (*TAIR) AT5G18070.1 (e_value=0.0) | Symbols: DRT101 | phosphoglucosamine mutase-related | chr5:5981117-5982787 FORWARD LENGTH=556;; (*ITAG) Solyc08g077270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58353284-58359554 transcript_region:SL2.40ch08:58353284..58359554+ go_terms:GO:0004610 functional_description:"Phosphoacetylglucosamine mutase (AHRD V1 **** B5X1B2_SALSA); contains Interpro domain(s) IPR016657 Phosphoacetylglucosamine mutase "; GO:0004610 NbS00015472g0005.1 protein AED:0.15 eAED:0.15 QI:47|0.8|0.83|1|1|1|6|208|240; (*GB) gi|225440069|ref|XP_002277086.1| (e_value=3e-119) PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|B1ZUW6|SYH_OPITP (e_value=4e-29) Histidine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hisS PE=3 SV=1;; (*TAIR) AT3G46100.1 (e_value=2e-111) | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486;; (*ITAG) Solyc03g119280.2.1 (e_value=1e-141) genomic_reference:SL2.40ch03 gene_region:61963971-61972631 transcript_region:SL2.40ch03:61963971..61972631- go_terms:GO:0003879,GO:0030234 functional_description:"Histidyl-tRNA synthetase 1 (AHRD V1 ***- D7LWN6_ARALY); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0003879,GO:0030234 NbS00015472g0002.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|798; (*GB) gi|225455986|ref|XP_002276686.1| (e_value=0.0) PREDICTED: AP-3 complex subunit delta-like [Vitis vinifera];; (*SWP) sp|Q9C744|AP3D_ARATH (e_value=7e-120) AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1;; (*TAIR) AT1G48760.3 (e_value=6e-121) | Symbols: delta-ADR | delta-adaptin | chr1:18036652-18039261 REVERSE LENGTH=869;; (*ITAG) Solyc03g119270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61959927-61962839 transcript_region:SL2.40ch03:61959927..61962839- go_terms:GO:0030276 functional_description:"AP-3 complex delta subunit-like protein (AHRD V1 ***- Q5QMU1_ORYSJ); contains Interpro domain(s) IPR017105 Adaptor protein complex AP-3, delta subunit "; GO:0030276 NbS00055732g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|312190412|gb|ADQ43211.1| (e_value=2e-25) unknown [Eutrema parvulum];; (*TAIR) AT5G66440.1 (e_value=5e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc04g080640.1.1 (e_value=3e-142) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:62343699-62344502 transcript_region:SL2.40ch04:62343699..62344502+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00021606g0005.1 protein AED:0.05 eAED:0.05 QI:69|1|1|1|1|1|6|212|581; (*GB) gi|356527433|ref|XP_003532315.1| (e_value=0.0) PREDICTED: laccase-17-like [Glycine max];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00021606g0008.1 protein AED:0.13 eAED:0.14 QI:7|0.5|0.11|1|0.37|0.33|9|0|401; (*GB) gi|224140285|ref|XP_002323513.1| (e_value=4e-99) amino acid transporter [Populus trichocarpa];; (*TAIR) AT5G02180.1 (e_value=8e-86) | Symbols: | Transmembrane amino acid transporter family protein | chr5:431034-433544 FORWARD LENGTH=550;; (*ITAG) Solyc10g084830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63549984-63554014 transcript_region:SL2.40ch10:63549984..63554014- functional_description:"Amino acid transporter (AHRD V1 ***- B9IFW4_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00002771g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|220; (*GB) gi|255566434|ref|XP_002524202.1| (e_value=1e-97) Zeamatin precursor, putative [Ricinus communis];; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=7e-78) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT5G02140.1 (e_value=1e-89) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:423384-424437 FORWARD LENGTH=294;; (*ITAG) Solyc05g053020.2.1 (e_value=2e-126) genomic_reference:SL2.40ch05 gene_region:62326978-62328642 transcript_region:SL2.40ch05:62326978..62328642+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9LZL8_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00002771g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|648; (*GB) gi|255566440|ref|XP_002524205.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc05g053010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62320694-62322766 transcript_region:SL2.40ch05:62320694..62322766+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00002771g0004.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|500; (*GB) gi|225449442|ref|XP_002283087.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate acyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9CAY3|GPAT5_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1;; (*TAIR) AT3G11430.1 (e_value=0.0) | Symbols: ATGPAT5, GPAT5 | glycerol-3-phosphate acyltransferase 5 | chr3:3595911-3597678 FORWARD LENGTH=502;; (*ITAG) Solyc04g011600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4029691-4031884 transcript_region:SL2.40ch04:4029691..4031884+ go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T011_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00002771g0006.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|115; (*GB) gi|193527444|gb|ACF19787.1| (e_value=4e-45) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc03g114260.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00002771g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|57014007|ref|YP_173478.1| (e_value=2e-67) hypothetical protein NitaMp141 [Nicotiana tabacum];; (*ITAG) Solyc07g017930.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00060478g0001.1 protein AED:0.18 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|144; (*ITAG) Solyc09g075660.2.1 (e_value=5e-14) genomic_reference:SL2.40ch09 gene_region:62805826-62806963 transcript_region:SL2.40ch09:62805826..62806963- functional_description:"Unknown Protein (AHRD V1)"; NbS00056308g0005.1 protein AED:0.36 eAED:0.51 QI:0|0|0.33|1|0|0|3|448|62 NbS00056308g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|0.75|0.33|0.5|4|0|343; (*GB) gi|359489978|ref|XP_002270380.2| (e_value=5e-147) PREDICTED: uncharacterized protein At1g28695 [Vitis vinifera];; (*SWP) sp|Q3E6Y3|Y1869_ARATH (e_value=4e-107) Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1;; (*TAIR) AT1G28710.3 (e_value=4e-114) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:10086850-10088025 REVERSE LENGTH=340;; (*ITAG) Solyc03g094120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49320521-49322475 transcript_region:SL2.40ch03:49320521..49322475- functional_description:"Os03g0849800 protein (Fragment) (AHRD V1 *--- Q0DLS4_ORYSJ)"; NbS00015292g0001.1 protein AED:0.25 eAED:0.25 QI:160|1|1|1|0.88|0.8|10|181|314; (*GB) gi|388491266|gb|AFK33699.1| (e_value=5e-156) unknown [Lotus japonicus];; (*SWP) sp|P42390|TRPA_MAIZE (e_value=1e-102) Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2;; (*TAIR) AT3G54640.1 (e_value=2e-150) | Symbols: TSA1, TRP3 | tryptophan synthase alpha chain | chr3:20223331-20225303 REVERSE LENGTH=312;; (*ITAG) Solyc01g098550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80797121-80803117 transcript_region:SL2.40ch01:80797121..80803117+ go_terms:GO:0008152,GO:0006568 functional_description:"Tryptophan synthase alpha chain (AHRD V1 ***- Q8LA83_ARATH); contains Interpro domain(s) IPR002028 Tryptophan synthase, alpha chain "; GO:0008152,GO:0006568 NbS00038176g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|2|0|238; (*GB) gi|255555337|ref|XP_002518705.1| (e_value=5e-114) cysteine protease, putative [Ricinus communis];; (*SWP) sp|P43297|RD21A_ARATH (e_value=1e-99) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=8e-102) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc01g107760.2.1 (e_value=3e-141) genomic_reference:SL2.40ch01 gene_region:86959457-86961934 transcript_region:SL2.40ch01:86959457..86961934- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00038176g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|485; (*GB) gi|209954717|dbj|BAG80549.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=7e-177) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT2G15480.1 (e_value=8e-172) | Symbols: UGT73B5 | UDP-glucosyl transferase 73B5 | chr2:6758817-6760452 FORWARD LENGTH=484;; (*ITAG) Solyc01g107780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86964618-86966214 transcript_region:SL2.40ch01:86964618..86966214- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00038176g0003.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|209954717|dbj|BAG80549.1| (e_value=5e-49) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=3e-25) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34135.2 (e_value=3e-20) | Symbols: UGT73B2 | UDP-glucosyltransferase 73B2 | chr4:16346009-16347016 REVERSE LENGTH=335;; (*ITAG) Solyc01g107780.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:86964618-86966214 transcript_region:SL2.40ch01:86964618..86966214- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00001371g0008.1 protein AED:0.17 eAED:0.17 QI:23|0.9|0.81|0.90|0.5|0.63|11|0|589; (*GB) gi|225440360|ref|XP_002270444.1| (e_value=0.0) PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera];; (*SWP) sp|Q6P3R1|KIF22_XENTR (e_value=2e-66) Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1;; (*TAIR) AT5G02370.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr5:503444-506388 FORWARD LENGTH=628;; (*ITAG) Solyc09g010810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4096964-4103593 transcript_region:SL2.40ch09:4096964..4103593- go_terms:GO:0003677,GO:0003777 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L7B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0003677,GO:0003777 NbS00001371g0007.1 protein AED:0.24 eAED:0.24 QI:91|1|1|1|1|1|2|512|93; (*GB) gi|12230182|sp|Q9XGX8.1|TIM9_MESCR (e_value=5e-56) RecName: Full=Mitochondrial import inner membrane translocase subunit Tim9;; (*SWP) sp|Q9XGX8|TIM9_MESCR (e_value=2e-57) Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1;; (*TAIR) AT3G46560.1 (e_value=6e-52) | Symbols: TIM9, emb2474 | Tim10/DDP family zinc finger protein | chr3:17138632-17139301 FORWARD LENGTH=93;; (*ITAG) Solyc10g086510.1.1 (e_value=7e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64631079-64633156 transcript_region:SL2.40ch10:64631079..64633156+ go_terms:GO:0042719 functional_description:"Mitochondrial import inner membrane translocase subunit tim9 (AHRD V1 ***- A6MZE3_ORYSI); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0042719 NbS00001371g0010.1 protein AED:0.36 eAED:0.36 QI:89|0|0.5|1|0|0.5|2|0|106; (*GB) gi|2497901|sp|Q40396.1|MT2_NICGU (e_value=8e-25) RecName: Full=Metallothionein-like protein type 2;; (*SWP) sp|Q40396|MT2_NICGU (e_value=2e-26) Metallothionein-like protein type 2 OS=Nicotiana glutinosa PE=3 SV=1;; (*ITAG) Solyc09g010800.2.1 (e_value=1e-22) genomic_reference:SL2.40ch09 gene_region:4094901-4096611 transcript_region:SL2.40ch09:4094901..4096611+ go_terms:GO:0046872 functional_description:"Type 2 metallothionein (AHRD V1 ***- B3VKV4_SOLNI); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0046872 NbS00030309g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.7|0.72|1|0.7|0.72|11|233|527; (*GB) gi|225432860|ref|XP_002283908.1| (e_value=0.0) PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera];; (*TAIR) AT3G22990.1 (e_value=0.0) | Symbols: LFR | ARM repeat superfamily protein | chr3:8164015-8166145 FORWARD LENGTH=460;; (*ITAG) Solyc03g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:175431-182346 transcript_region:SL2.40ch03:175431..182346+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MXC7 (AHRD V1 ***- Q9LS90_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00030309g0011.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|467; (*GB) gi|356535335|ref|XP_003536202.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max];; (*SWP) sp|O48780|KCS11_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=0.0) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc03g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:183106-186591 transcript_region:SL2.40ch03:183106..186591- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00021880g0005.1 protein AED:0.15 eAED:0.15 QI:642|1|0.75|1|0.33|0|4|311|504; (*GB) gi|255541420|ref|XP_002511774.1| (e_value=2e-174) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q55EI6|ATX10_DICDI (e_value=4e-19) Ataxin-10 homolog OS=Dictyostelium discoideum GN=atxn10 PE=3 SV=1;; (*TAIR) AT4G00231.1 (e_value=8e-156) | Symbols: MEE50 | ARM repeat superfamily protein | chr4:97528-99050 FORWARD LENGTH=475;; (*ITAG) Solyc02g080650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39410137-39412177 transcript_region:SL2.40ch02:39410137..39412177+ go_terms:GO:0005488 functional_description:"Copper transport protein 86 (AHRD V1 *--- B2G4S5_ZYGRO); contains Interpro domain(s) IPR019156 Ataxin-10 domain "; GO:0005488 NbS00042010g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0.33|0.25|4|0|358; (*GB) gi|359476721|ref|XP_002268376.2| (e_value=2e-117) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=2e-105) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=2e-106) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g005190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:129527-130660 transcript_region:SL2.40ch12:129527..130660+ go_terms:GO:0004721,GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 ***- C1BT38_9MAXI); contains Interpro domain(s) IPR010822 Sporulation stage II, protein E C-terminal "; GO:0004721,GO:0003824 NbS00055466g0014.1 protein AED:0.19 eAED:0.19 QI:122|1|1|1|0.7|0.63|11|279|488; (*GB) gi|225470420|ref|XP_002273964.1| (e_value=3e-44) PREDICTED: protein LOL2 [Vitis vinifera];; (*SWP) sp|Q704V3|LOL5_ORYSJ (e_value=4e-33) Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1;; (*TAIR) AT4G21610.1 (e_value=2e-33) | Symbols: LOL2 | lsd one like 2 | chr4:11489069-11490300 FORWARD LENGTH=155;; (*ITAG) Solyc02g078270.2.1 (e_value=1e-129) genomic_reference:SL2.40ch02 gene_region:37592120-37597984 transcript_region:SL2.40ch02:37592120..37597984+ functional_description:"Zinc finger protein LSD1 (AHRD V1 *--- Q6QUK7_ORYSJ); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; NbS00055466g0002.1 protein AED:0.22 eAED:0.22 QI:280|0|0.5|1|0|0.5|2|567|119; (*GB) gi|225460055|ref|XP_002274036.1| (e_value=4e-39) PREDICTED: molybdopterin synthase sulfur carrier subunit [Vitis vinifera];; (*SWP) sp|Q6YVX4|MOC2A_ORYSJ (e_value=3e-33) Molybdopterin synthase sulfur carrier subunit OS=Oryza sativa subsp. japonica GN=Os02g0558300 PE=3 SV=1;; (*TAIR) AT4G10100.3 (e_value=1e-29) | Symbols: CNX7, SIR5 | co-factor for nitrate, reductase and xanthine dehydrogenase 7 | chr4:6309091-6309381 FORWARD LENGTH=96;; (*ITAG) Solyc02g090010.1.1 (e_value=2e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:46267262-46267450 transcript_region:SL2.40ch02:46267262..46267450- go_terms:GO:0042802,GO:0030366 functional_description:"Molybdopterin synthase sulfur carrier subunit (AHRD V1 **** MOC2A_ORYSJ); contains Interpro domain(s) IPR003749 ThiamineS "; GO:0042802,GO:0030366 NbS00055466g0013.1 protein AED:0.11 eAED:0.11 QI:225|1|1|1|0.8|0.66|6|706|128; (*GB) gi|332205181|gb|AEE36479.1| (e_value=5e-85) TBP-associated factor 13 [Solanum melongena];; (*SWP) sp|Q54CN8|TAF13_DICDI (e_value=6e-31) Transcription initiation factor TFIID subunit 13 OS=Dictyostelium discoideum GN=taf13 PE=3 SV=1;; (*TAIR) AT1G02680.1 (e_value=1e-56) | Symbols: TAF13 | TBP-associated factor 13 | chr1:581084-581919 FORWARD LENGTH=126;; (*ITAG) Solyc02g078300.2.1 (e_value=6e-90) genomic_reference:SL2.40ch02 gene_region:37621714-37624964 transcript_region:SL2.40ch02:37621714..37624964- go_terms:GO:0008022 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 ***- D3BV86_POLPA); contains Interpro domain(s) IPR003195 Transcription initiation factor IID, 18 kDa subunit "; GO:0008022 NbS00055466g0003.1 protein AED:0.23 eAED:0.25 QI:0|0.83|0.71|1|1|1|7|0|199; (*GB) gi|255556047|ref|XP_002519058.1| (e_value=5e-70) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G33793.1 (e_value=5e-57) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14297107-14299217 FORWARD LENGTH=212;; (*ITAG) Solyc02g078280.2.1 (e_value=1e-78) genomic_reference:SL2.40ch02 gene_region:37598243-37601345 transcript_region:SL2.40ch02:37598243..37601345- functional_description:"Myosin-like protein (AHRD V1 *-*- Q84ZN0_ORYSJ)"; NbS00022385g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.58|0.46|0.84|0.58|0.61|13|0|934; (*GB) gi|357476307|ref|XP_003608439.1| (e_value=0.0) ABC transporter G family member [Medicago truncatula];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00010284g0006.1 protein AED:0.08 eAED:0.11 QI:9|0.63|0.58|1|0.81|0.83|12|429|985; (*GB) gi|359476108|ref|XP_002282493.2| (e_value=3e-172) PREDICTED: uncharacterized protein LOC100261127 [Vitis vinifera];; (*SWP) sp|Q95QD7|LIN54_CAEEL (e_value=9e-28) Protein lin-54 OS=Caenorhabditis elegans GN=lin-54 PE=1 SV=1;; (*TAIR) AT3G22780.1 (e_value=5e-53) | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC domain-containing protein | chr3:8048927-8052058 FORWARD LENGTH=695;; (*ITAG) Solyc08g067150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53283144-53291920 transcript_region:SL2.40ch08:53283144..53291920+ functional_description:"Tesmin/TSO1-like CXC domain containing protein expressed (AHRD V1 *--- Q10G99_ORYSJ); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbS00044934g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|477; (*GB) gi|225452564|ref|XP_002280597.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 40 [Vitis vinifera];; (*SWP) sp|Q9FL17|PUB40_ARATH (e_value=3e-139) U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2;; (*TAIR) AT5G40140.1 (e_value=2e-140) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr5:16057347-16058999 FORWARD LENGTH=550;; (*ITAG) Solyc02g087200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44246109-44247554 transcript_region:SL2.40ch02:44246109..44247554- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 40 (AHRD V1 **-- PUB40_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00044934g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.5|0.5|1|1|4|159|178; (*GB) gi|21592790|gb|AAM64739.1| (e_value=2e-13) unknown [Arabidopsis thaliana];; (*SWP) sp|Q9LFR3|GASAE_ARATH (e_value=8e-15) Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1;; (*TAIR) AT5G14920.1 (e_value=6e-16) | Symbols: | Gibberellin-regulated family protein | chr5:4826598-4827761 FORWARD LENGTH=275;; (*ITAG) Solyc03g113910.2.1 (e_value=2e-13) genomic_reference:SL2.40ch03 gene_region:58001941-58004317 transcript_region:SL2.40ch03:58001941..58004317+ functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6SKV6_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00031114g0006.1 protein AED:0.15 eAED:0.15 QI:172|1|0.88|1|1|1|9|612|516; (*GB) gi|255554048|ref|XP_002518064.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=0.0) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G04910.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:1388101-1391074 REVERSE LENGTH=519;; (*ITAG) Solyc05g053720.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62901420-62908425 transcript_region:SL2.40ch05:62901420..62908425- functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00031114g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|1|1|1|4|0|993; (*GB) gi|224060379|ref|XP_002300170.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4N3|UBP2_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2;; (*TAIR) AT1G04860.1 (e_value=0.0) | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2 | chr1:1369306-1372290 REVERSE LENGTH=961;; (*ITAG) Solyc05g053690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62884728-62888637 transcript_region:SL2.40ch05:62884728..62888637+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9GFW8_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00031114g0009.1 protein AED:0.14 eAED:0.39 QI:33|0.33|0|1|0|0|4|0|193; (*GB) gi|224065383|ref|XP_002301792.1| (e_value=4e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJR7|XTH3_ARATH (e_value=6e-46) Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1;; (*TAIR) AT3G25050.1 (e_value=4e-47) | Symbols: XTH3 | xyloglucan endotransglucosylase/hydrolase 3 | chr3:9126872-9128218 FORWARD LENGTH=290;; (*ITAG) Solyc05g053700.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62890386-62893341 transcript_region:SL2.40ch05:62890386..62893341+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** D5HRN0_FRAAN); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00000152g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|586|484; (*GB) gi|302142171|emb|CBI19374.3| (e_value=5e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G49800.1 (e_value=1e-54) | Symbols: | BSD domain-containing protein | chr3:18471957-18473676 REVERSE LENGTH=428;; (*ITAG) Solyc04g077600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60143082-60148275 transcript_region:SL2.40ch04:60143082..60148275- functional_description:"BSD domain containing protein (AHRD V1 *-*- B6SVJ3_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00000152g0001.1 protein AED:0.22 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|394; (*GB) gi|225458890|ref|XP_002285420.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 30 [Vitis vinifera];; (*SWP) sp|Q058P4|PUB30_ARATH (e_value=0.0) U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1;; (*TAIR) AT3G49810.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:18474936-18476282 REVERSE LENGTH=448;; (*ITAG) Solyc04g077610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60152942-60154785 transcript_region:SL2.40ch04:60152942..60154785- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LSY5_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00000152g0004.1 protein AED:0.51 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|68 NbS00000152g0011.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|82 NbS00000152g0012.1 protein AED:0.43 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|76 NbS00016150g0003.1 protein AED:0.27 eAED:0.27 QI:202|0.9|0.90|1|0.9|0.81|11|0|308; (*GB) gi|48093461|gb|AAT40107.1| (e_value=0.0) UDP-glucuronate decarboxylase 1 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=3e-115) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT2G28760.3 (e_value=0.0) | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336469-12338642 REVERSE LENGTH=343;; (*ITAG) Solyc04g011400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3868800-3872796 transcript_region:SL2.40ch04:3868800..3872796- go_terms:GO:0048040 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **-* D5RML8_9PROT); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0048040 NbS00016150g0006.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.2|0.8|1|1|5|0|334; (*GB) gi|297746108|emb|CBI16164.3| (e_value=2e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G46450.1 (e_value=5e-77) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486;; (*ITAG) Solyc05g054570.2.1 (e_value=2e-146) genomic_reference:SL2.40ch05 gene_region:63605270-63611096 transcript_region:SL2.40ch05:63605270..63611096+ go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q84TA5_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00016150g0010.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.25|1|1|4|0|172; (*GB) gi|255581107|ref|XP_002531368.1| (e_value=3e-28) hypothetical protein RCOM_0982390 [Ricinus communis];; (*TAIR) AT3G46450.1 (e_value=8e-18) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486;; (*ITAG) Solyc05g054570.2.1 (e_value=4e-85) genomic_reference:SL2.40ch05 gene_region:63605270-63611096 transcript_region:SL2.40ch05:63605270..63611096+ go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q84TA5_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00016150g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.5|0.66|1|1|6|331|263; (*GB) gi|359486632|ref|XP_002279143.2| (e_value=4e-131) PREDICTED: methionyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|Q55729|SYM_SYNY3 (e_value=3e-67) Methionine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=metG PE=3 SV=1;; (*TAIR) AT3G55400.1 (e_value=2e-131) | Symbols: OVA1 | methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) | chr3:20535809-20538999 REVERSE LENGTH=616;; (*ITAG) Solyc05g054600.2.1 (e_value=1e-147) genomic_reference:SL2.40ch05 gene_region:63621360-63629242 transcript_region:SL2.40ch05:63621360..63629242- go_terms:GO:0004825 functional_description:"Methionyl-tRNA synthetase (AHRD V1 **** B2J3G3_NOSP7); contains Interpro domain(s) IPR002304 Methionyl-tRNA synthetase, class Ia "; GO:0004825 NbS00028025g0019.1 protein AED:0.17 eAED:0.17 QI:5|1|0.88|1|0.62|0.55|9|257|281; (*GB) gi|224061226|ref|XP_002300379.1| (e_value=4e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=6e-116) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=5e-117) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc10g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:733326-738148 transcript_region:SL2.40ch10:733326..738148+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00028025g0021.1 protein AED:0.23 eAED:0.23 QI:143|1|1|1|0.90|0.83|12|408|597; (*GB) gi|296089910|emb|CBI39729.3| (e_value=4e-81) unnamed protein product [Vitis vinifera];; (*SWP) sp|P35659|DEK_HUMAN (e_value=8e-15) Protein DEK OS=Homo sapiens GN=DEK PE=1 SV=1;; (*TAIR) AT5G55660.1 (e_value=2e-60) | Symbols: | DEK domain-containing chromatin associated protein | chr5:22539375-22543142 FORWARD LENGTH=778;; (*ITAG) Solyc10g006000.2.1 (e_value=7e-106) genomic_reference:SL2.40ch10 gene_region:756753-762127 transcript_region:SL2.40ch10:756753..762127- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00028025g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|3|0|772; (*GB) gi|356527151|ref|XP_003532176.1| (e_value=6e-49) PREDICTED: uncharacterized protein LOC100813702 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=6e-44) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065510.2.1 (e_value=1e-48) genomic_reference:SL2.40ch07 gene_region:64458536-64462192 transcript_region:SL2.40ch07:64458536..64462192- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA binding protein (AHRD V1 *-*- B7SDF0_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00028025g0005.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|590; (*GB) gi|356566441|ref|XP_003551440.1| (e_value=1e-60) PREDICTED: uncharacterized protein LOC100813748 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=2e-44) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065510.2.1 (e_value=3e-51) genomic_reference:SL2.40ch07 gene_region:64458536-64462192 transcript_region:SL2.40ch07:64458536..64462192- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA binding protein (AHRD V1 *-*- B7SDF0_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00028025g0004.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|296089912|emb|CBI39731.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G55670.1 (e_value=2e-14) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=710;; (*ITAG) Solyc07g065520.2.1 (e_value=1e-23) genomic_reference:SL2.40ch07 gene_region:64464292-64467536 transcript_region:SL2.40ch07:64464292..64467536- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *--- Q9XEL4_PICGL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00024817g0002.1 protein AED:0.29 eAED:0.46 QI:330|0|0.33|0.66|0.5|0.33|3|0|114 NbS00042972g0004.1 protein AED:0.22 eAED:0.22 QI:222|1|1|1|1|1|2|8|125; (*GB) gi|224107655|ref|XP_002314551.1| (e_value=8e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93X62|FABG1_BRANA (e_value=7e-13) 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1;; (*TAIR) AT1G24360.1 (e_value=9e-14) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc05g014560.2.1 (e_value=3e-28) genomic_reference:SL2.40ch05 gene_region:8402493-8406263 transcript_region:SL2.40ch05:8402493..8406263- go_terms:GO:0004303 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0004303 NbS00036756g0009.1 protein AED:0.08 eAED:0.08 QI:83|0.8|0.83|1|0.6|0.5|6|0|811; (*GB) gi|323370547|gb|ADX43928.1| (e_value=0.0) ADR1 [Solanum tuberosum];; (*SWP) sp|Q9SZA7|DRL29_ARATH (e_value=0.0) Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3;; (*TAIR) AT4G33300.2 (e_value=0.0) | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051162-16054005 REVERSE LENGTH=816;; (*ITAG) Solyc04g079420.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61521424-61524959 transcript_region:SL2.40ch04:61521424..61524959+ go_terms:GO:0016301 functional_description:"Nbs-lrr, resistance protein"; GO:0016301 NbS00036756g0007.1 protein AED:0.29 eAED:0.30 QI:0|1|0.84|1|1|1|13|0|502; (*GB) gi|356564217|ref|XP_003550352.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 3-like [Glycine max];; (*SWP) sp|Q8GZD4|NAT3_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2;; (*TAIR) AT2G26510.1 (e_value=0.0) | Symbols: PDE135 | Xanthine/uracil permease family protein | chr2:11274118-11277464 FORWARD LENGTH=551;; (*ITAG) Solyc04g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61525781-61532952 transcript_region:SL2.40ch04:61525781..61532952- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I1J7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00022277g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|8|0|597; (*GB) gi|169977330|emb|CAQ18912.1| (e_value=0.0) domains rearranged methyltransferase [Nicotiana sylvestris];; (*SWP) sp|Q9LXE5|DRM1_ARATH (e_value=0.0) DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2;; (*TAIR) AT5G15380.1 (e_value=0.0) | Symbols: DRM1 | domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624;; (*ITAG) Solyc02g062740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00022277g0007.1 protein AED:0.15 eAED:0.15 QI:37|0.75|0.6|1|0|0|5|0|249; (*GB) gi|255547045|ref|XP_002514580.1| (e_value=1e-83) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|P05100|3MG1_ECOLI (e_value=2e-25) DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1;; (*TAIR) AT1G13635.2 (e_value=2e-76) | Symbols: | DNA glycosylase superfamily protein | chr1:4674248-4675784 FORWARD LENGTH=311;; (*ITAG) Solyc05g010800.2.1 (e_value=3e-92) genomic_reference:SL2.40ch05 gene_region:4981493-4984370 transcript_region:SL2.40ch05:4981493..4984370+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 *-*- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00061608g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|85; (*GB) gi|357454091|ref|XP_003597326.1| (e_value=5e-42) Myb-like transcription factor [Medicago truncatula];; (*SWP) sp|Q4JL84|MYB59_ARATH (e_value=3e-42) Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2;; (*TAIR) AT5G59780.3 (e_value=2e-43) | Symbols: MYB59, ATMYB59-3 | myb domain protein 59 | chr5:24082425-24083350 REVERSE LENGTH=235;; (*ITAG) Solyc11g073120.1.1 (e_value=7e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53297151-53298385 transcript_region:SL2.40ch11:53297151..53298385+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00025642g0012.1 protein AED:0.11 eAED:0.13 QI:0|0.68|0.6|0.9|0.89|0.8|20|621|1820; (*GB) gi|147766845|emb|CAN76416.1| (e_value=0.0) hypothetical protein VITISV_029037 [Vitis vinifera];; (*SWP) sp|Q9C5X9|HAC1_ARATH (e_value=0.0) Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2;; (*TAIR) AT1G79000.1 (e_value=0.0) | Symbols: HAC1, PCAT2, ATHPCAT2, ATHAC1 | histone acetyltransferase of the CBP family 1 | chr1:29716933-29723984 REVERSE LENGTH=1697;; (*ITAG) Solyc01g008120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2245997-2262660 transcript_region:SL2.40ch01:2245997..2262660- go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00025642g0013.1 protein AED:0.16 eAED:0.16 QI:169|0.83|0.71|1|0.5|0.57|7|340|709; (*GB) gi|255555547|ref|XP_002518810.1| (e_value=0.0) electron transporter, putative [Ricinus communis];; (*TAIR) AT3G11920.1 (e_value=0.0) | Symbols: | glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=630;; (*ITAG) Solyc01g008130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2274518-2283875 transcript_region:SL2.40ch01:2274518..2283875+ go_terms:GO:0023034,GO:0045454 functional_description:"DEP domain-containing protein 1B (AHRD V1 *--- DEP1B_HUMAN); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00024271g0015.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|1|1|2|98|379; (*GB) gi|225437010|ref|XP_002277881.1| (e_value=0.0) PREDICTED: patatin group A-3 [Vitis vinifera];; (*SWP) sp|Q41487|PAT16_SOLTU (e_value=3e-17) Patatin-16 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G63200.1 (e_value=0.0) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00024271g0003.1 protein AED:0.06 eAED:0.06 QI:464|1|0.66|1|0|0.33|3|0|534; (*GB) gi|147882995|gb|ABQ51814.1| (e_value=0.0) RAN GTPase-activating protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q9LE82|RAGP1_ARATH (e_value=0.0) RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1;; (*TAIR) AT3G63130.2 (e_value=0.0) | Symbols: RANGAP1 | RAN GTPase activating protein 1 | chr3:23325108-23326715 FORWARD LENGTH=535;; (*ITAG) Solyc09g065190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:58708850-58710454 transcript_region:SL2.40ch09:58708850..58710454- go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase-activating protein 1 (AHRD V1 **-* A7M8K3_SOLTU); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; GO:0005515,GO:0005098 NbS00024271g0016.1 protein AED:0.22 eAED:0.22 QI:221|1|1|1|0.83|0.89|19|233|677; (*GB) gi|225432592|ref|XP_002281388.1| (e_value=0.0) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform 1 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=0.0) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=0.0) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00024271g0017.1 protein AED:0.53 eAED:0.91 QI:0|0|0|0.75|0.66|0.5|4|0|134 NbS00024271g0019.1 protein AED:0.07 eAED:0.07 QI:0|0.83|0.57|1|0.83|0.71|7|0|423; (*GB) gi|32746733|gb|AAP87140.1| (e_value=0.0) mRNA-binding protein precursor, partial [Nicotiana tabacum];; (*SWP) sp|Q9LYA9|CP41A_ARATH (e_value=0.0) Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1;; (*TAIR) AT3G63140.1 (e_value=0.0) | Symbols: CSP41A | chloroplast stem-loop binding protein of 41 kDa | chr3:23327006-23328620 REVERSE LENGTH=406;; (*ITAG) Solyc09g065180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58705860-58708565 transcript_region:SL2.40ch09:58705860..58708565+ go_terms:GO:0008266,GO:0003729 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- B7K7X4_CYAP7); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008266,GO:0003729 NbS00024271g0018.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|0.5|0|3|0|251; (*GB) gi|255559444|ref|XP_002520742.1| (e_value=4e-96) cyclin-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q75HV0|CCP31_ORYSJ (e_value=1e-67) Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1;; (*TAIR) AT3G63120.1 (e_value=2e-56) | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23323143-23323893 REVERSE LENGTH=221;; (*ITAG) Solyc09g065200.2.1 (e_value=7e-134) genomic_reference:SL2.40ch09 gene_region:58774954-58777893 transcript_region:SL2.40ch09:58774954..58777893+ go_terms:GO:0004693 functional_description:"Cyclin-dependent kinase (AHRD V1 **** A6YTD1_CUCME); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0004693 NbS00024939g0004.1 protein AED:0.58 eAED:0.65 QI:32|0.44|0.3|0.7|0.77|0.8|10|0|221; (*GB) gi|76573323|gb|ABA46766.1| (e_value=3e-99) pre-mRNA splicing factor-like protein [Solanum tuberosum];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=9e-74) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT3G49430.3 (e_value=3e-91) | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300;; (*ITAG) Solyc03g082380.2.1 (e_value=4e-102) genomic_reference:SL2.40ch03 gene_region:45864734-45871121 transcript_region:SL2.40ch03:45864734..45871121- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- B0WP07_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00018737g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|0.6|1|1|5|555|751; (*GB) gi|255556996|ref|XP_002519531.1| (e_value=0.0) Auxin response factor, putative [Ricinus communis];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc09g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1332643-1335760 transcript_region:SL2.40ch09:1332643..1335760- go_terms:GO:0003700,GO:0035198 functional_description:"Auxin response factor 3 (AHRD V1 **** A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0035198 NbS00018737g0007.1 protein AED:0.74 eAED:1.00 QI:0|0|0|1|1|1|2|0|83 NbS00018737g0006.1 protein AED:0.22 eAED:0.44 QI:0|0|0|1|0|0|3|0|180; (*ITAG) Solyc06g011460.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00013298g0007.1 protein AED:0.04 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|281; (*GB) gi|147818973|emb|CAN67117.1| (e_value=4e-26) hypothetical protein VITISV_026466 [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=1e-19) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=7e-21) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc06g064580.1.1 (e_value=4e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36634476-36636833 transcript_region:SL2.40ch06:36634476..36636833+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00013298g0009.1 protein AED:0.05 eAED:0.06 QI:3|0|0|1|0|0|2|0|232; (*GB) gi|359497334|ref|XP_002263046.2| (e_value=8e-21) PREDICTED: transcription factor bHLH25-like, partial [Vitis vinifera];; (*ITAG) Solyc06g064590.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36640366-36644660 transcript_region:SL2.40ch06:36640366..36644660+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *--- Q401N5_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00046638g0001.1 protein AED:0.10 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|225428390|ref|XP_002283597.1| (e_value=8e-49) PREDICTED: bifunctional phosphatase IMPL2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=2e-49) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=4e-50) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g097780.1.1 (e_value=4e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80257738-80258224 transcript_region:SL2.40ch01:80257738..80258224+ go_terms:GO:0004437 functional_description:"Inositol monophosphatase family protein (AHRD V1 ***- D7MGB6_ARALY); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0004437 NbC25498951g0003.1 protein AED:0.29 eAED:0.47 QI:81|1|0|1|1|1|2|0|27 NbS00012047g0014.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.16|1|1|1|6|0|491; (*GB) gi|75324707|sp|Q6T7E8.1|PURA_TOBAC (e_value=0.0) RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=AdSS; AltName: Full=IMP--aspartate ligase; Flags: Precursor;; (*SWP) sp|Q6T7E8|PURA_TOBAC (e_value=0.0) Adenylosuccinate synthetase, chloroplastic OS=Nicotiana tabacum GN=PURA PE=2 SV=1;; (*TAIR) AT3G57610.1 (e_value=0.0) | Symbols: ADSS | adenylosuccinate synthase | chr3:21334519-21336603 REVERSE LENGTH=490;; (*ITAG) Solyc10g080320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60933642-60936711 transcript_region:SL2.40ch10:60933642..60936711- go_terms:GO:0004019 functional_description:"Adenylosuccinate synthetase (AHRD V1 **** Q9FYW9_SOLLC); contains Interpro domain(s) IPR001114 Adenylosuccinate synthetase "; GO:0004019 NbS00012047g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.92|0.78|1|0.92|0.85|14|0|651; (*GB) gi|224090282|ref|XP_002308965.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q60560|SMBP2_MESAU (e_value=1e-157) DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1 SV=1;; (*TAIR) AT2G03270.1 (e_value=0.0) | Symbols: | DNA-binding protein, putative | chr2:994071-995990 FORWARD LENGTH=639;; (*ITAG) Solyc03g063760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33354521-33370213 transcript_region:SL2.40ch03:33354521..33370213- go_terms:GO:0043141 functional_description:"DNA helicase family protein expressed (AHRD V1 **** Q6F2U8_ORYSJ); contains Interpro domain(s) IPR004483 DNA helicase, putative "; GO:0043141 NbS00012047g0016.1 protein AED:0.57 eAED:0.79 QI:51|0.5|0|1|0.5|0.33|3|0|42 NbS00012047g0003.1 protein AED:0.12 eAED:0.12 QI:87|0.8|0.5|1|0.8|0.66|6|0|755; (*GB) gi|255571552|ref|XP_002526722.1| (e_value=3e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G14770.2 (e_value=5e-17) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:5086867-5088437 REVERSE LENGTH=429;; (*ITAG) Solyc03g063720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33035437-33037712 transcript_region:SL2.40ch03:33035437..33037712+ go_terms:GO:0008270 functional_description:"Os11g0482500 protein (Fragment) (AHRD V1 *-*- C7J993_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00012173g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0.5|2|0|251; (*GB) gi|225441862|ref|XP_002284216.1| (e_value=5e-107) PREDICTED: heat stress transcription factor B-3-like [Vitis vinifera];; (*SWP) sp|O22230|HSFB3_ARATH (e_value=1e-58) Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1;; (*TAIR) AT2G41690.1 (e_value=8e-60) | Symbols: AT-HSFB3, HSFB3 | heat shock transcription factor B3 | chr2:17381723-17382577 FORWARD LENGTH=244;; (*ITAG) Solyc04g016000.2.1 (e_value=1e-124) genomic_reference:SL2.40ch04 gene_region:6594909-6598451 transcript_region:SL2.40ch04:6594909..6598451- go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 ***- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00012173g0013.1 protein AED:0.24 eAED:0.24 QI:95|0.66|0.85|1|0.66|0.85|7|97|342; (*GB) gi|225441868|ref|XP_002284232.1| (e_value=2e-176) PREDICTED: mitochondrial GTPase 1 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8R2R6|MTG1_MOUSE (e_value=6e-27) Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2;; (*TAIR) AT2G41670.1 (e_value=2e-164) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17374118-17376177 FORWARD LENGTH=386;; (*ITAG) Solyc04g016050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6723021-6728721 transcript_region:SL2.40ch04:6723021..6728721- go_terms:GO:0005515,GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 **** D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0005515,GO:0003924 NbS00012173g0012.1 protein AED:0.30 eAED:0.30 QI:2|1|0.33|1|1|0.66|3|0|171; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=1e-76) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=3e-66) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=2e-67) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=5e-100) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00048442g0004.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|0|1|0|221; (*GB) gi|37993671|gb|AAR06921.1| (e_value=5e-78) UDP-glycosyltransferase 89B2 [Stevia rebaudiana];; (*SWP) sp|Q9C9B0|U89B1_ARATH (e_value=5e-69) UDP-glycosyltransferase 89B1 OS=Arabidopsis thaliana GN=UGT89B1 PE=2 SV=2;; (*TAIR) AT1G73880.1 (e_value=4e-70) | Symbols: UGT89B1 | UDP-glucosyl transferase 89B1 | chr1:27785143-27786564 FORWARD LENGTH=473;; (*ITAG) Solyc03g114710.2.1 (e_value=1e-116) genomic_reference:SL2.40ch03 gene_region:58661374-58663109 transcript_region:SL2.40ch03:58661374..58663109- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** B5MGN9_PHYAM); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00006276g0015.1 protein AED:0.22 eAED:0.26 QI:5|0.16|0|1|0.16|0.14|7|0|623; (*GB) gi|113205243|gb|AAT39312.2| (e_value=0.0) Major Facilitator Superfamily protein [Solanum demissum];; (*SWP) sp|Q9M1E1|PTR38_ARATH (e_value=8e-141) Probable nitrate excretion transporter 2 OS=Arabidopsis thaliana GN=At3g45660 PE=2 SV=1;; (*TAIR) AT3G45660.1 (e_value=6e-142) | Symbols: | Major facilitator superfamily protein | chr3:16762205-16764241 FORWARD LENGTH=557;; (*ITAG) Solyc11g072570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52826268-52828611 transcript_region:SL2.40ch11:52826268..52828611- go_terms:GO:0016020 functional_description:"Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7LMP9_ARALY); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00006276g0009.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|111; (*GB) gi|113205241|gb|AAT39313.2| (e_value=2e-30) POT family protein [Solanum demissum];; (*ITAG) Solyc11g072560.1.1 (e_value=4e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52821304-52823924 transcript_region:SL2.40ch11:52821304..52823924- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00006276g0010.1 protein AED:0.11 eAED:0.12 QI:258|0.8|0.5|1|1|1|6|0|474; (*GB) gi|113205238|gb|ABI34308.1| (e_value=0.0) WD domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q6NRH1|DCAF8_XENLA (e_value=1e-90) DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1;; (*TAIR) AT3G45620.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:16745918-16747993 FORWARD LENGTH=481;; (*ITAG) Solyc11g072540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52812637-52816593 transcript_region:SL2.40ch11:52812637..52816593+ functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00021268g0010.1 protein AED:0.08 eAED:0.08 QI:94|1|1|1|1|1|2|91|313; (*GB) gi|224137528|ref|XP_002322580.1| (e_value=6e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE1|MCA9_ARATH (e_value=5e-115) Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1;; (*TAIR) AT5G04200.1 (e_value=4e-116) | Symbols: AtMC9, MC9 | metacaspase 9 | chr5:1153893-1154870 FORWARD LENGTH=325;; (*ITAG) Solyc10g081300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61728461-61730388 transcript_region:SL2.40ch10:61728461..61730388- go_terms:GO:0006508 functional_description:"Metacaspase 7 (AHRD V1 *-*- D7KWG9_ARALY); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508 NbS00021268g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.6|1|1|1|5|1048|62 NbS00021268g0008.1 protein AED:0.09 eAED:0.09 QI:357|1|1|1|0.68|0.70|17|324|519; (*GB) gi|224137524|ref|XP_002322579.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94BZ1|ZIFL1_ARATH (e_value=0.0) Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1;; (*TAIR) AT3G43790.1 (e_value=0.0) | Symbols: ZIFL2 | zinc induced facilitator-like 2 | chr3:15655443-15658848 FORWARD LENGTH=478;; (*ITAG) Solyc10g076940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59219655-59225681 transcript_region:SL2.40ch10:59219655..59225681- go_terms:GO:0055085 functional_description:"Major facilitator superfamily transporter (AHRD V1 **-- A8NUY3_COPC7); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00058957g0004.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.8|0|0.2|5|0|503; (*GB) gi|359493517|ref|XP_002264078.2| (e_value=1e-172) PREDICTED: pentatricopeptide repeat-containing protein At1g33350-like [Vitis vinifera];; (*SWP) sp|Q9C501|PPR70_ARATH (e_value=8e-151) Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1;; (*TAIR) AT1G33350.1 (e_value=6e-152) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:12090071-12091687 REVERSE LENGTH=538;; (*ITAG) Solyc03g096610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:52269957-52271390 transcript_region:SL2.40ch03:52269957..52271390+ go_terms:GO:0008116,GO:0015450 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIH8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0015450 NbS00006909g0019.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|341|137; (*GB) gi|255549485|ref|XP_002515795.1| (e_value=6e-50) Pre-mRNA-processing protein PRP40, putative [Ricinus communis];; (*TAIR) AT3G19840.1 (e_value=5e-48) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=4e-77) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00006909g0015.1 protein AED:0.09 eAED:0.09 QI:238|1|1|1|0.94|0.88|18|491|812; (*GB) gi|359484098|ref|XP_002268907.2| (e_value=0.0) PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Vitis vinifera];; (*SWP) sp|Q8H0T9|KTNB1_ARATH (e_value=0.0) Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3;; (*TAIR) AT5G23430.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:7894073-7899862 REVERSE LENGTH=837;; (*ITAG) Solyc04g008720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2384699-2393112 transcript_region:SL2.40ch04:2384699..2393112+ go_terms:GO:0046982 functional_description:"WD-repeat protein (AHRD V1 *--- B0C2Q9_ACAM1); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0046982 NbS00006909g0018.1 protein AED:0.30 eAED:0.38 QI:0|0.75|0.4|1|1|1|5|0|235; (*GB) gi|359473511|ref|XP_002272014.2| (e_value=1e-73) PREDICTED: transcription elongation regulator 1-like [Vitis vinifera];; (*SWP) sp|O14776|TCRG1_HUMAN (e_value=4e-13) Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2;; (*TAIR) AT3G19840.1 (e_value=5e-60) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=4e-102) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00006909g0017.1 protein AED:0.20 eAED:0.20 QI:179|0.92|0.86|1|0.85|0.86|15|403|409; (*GB) gi|255544191|ref|XP_002513158.1| (e_value=0.0) alpha-galactosidase/alpha-n-acetylgalactosaminidase, putative [Ricinus communis];; (*SWP) sp|Q42656|AGAL_COFAR (e_value=1e-178) Alpha-galactosidase OS=Coffea arabica PE=1 SV=1;; (*TAIR) AT5G08380.1 (e_value=0.0) | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1 | chr5:2694851-2697616 REVERSE LENGTH=410;; (*ITAG) Solyc04g008730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2393747-2398009 transcript_region:SL2.40ch04:2393747..2398009- go_terms:GO:0004557,GO:0008456 functional_description:"Alpha-galactosidase 1 (AHRD V1 **** Q5ZP79_PEA); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557,GO:0008456 NbS00006909g0016.1 protein AED:0.34 eAED:0.34 QI:141|0|0.66|0.66|1|1|3|389|187 NbS00017271g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.71|1|1|0.85|7|0|655; (*GB) gi|356544082|ref|XP_003540484.1| (e_value=0.0) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max];; (*SWP) sp|Q9MAH1|TTL1_ARATH (e_value=0.0) TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1;; (*TAIR) AT1G53300.1 (e_value=0.0) | Symbols: TTL1 | tetratricopetide-repeat thioredoxin-like 1 | chr1:19879726-19882375 FORWARD LENGTH=699;; (*ITAG) Solyc07g062580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62483556-62487561 transcript_region:SL2.40ch07:62483556..62487561- go_terms:GO:0005488,GO:0045454 functional_description:"DnaJ homolog subfamily C member 7 (AHRD V1 *--- B5X1N5_SALSA); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005488,GO:0045454 NbS00044170g0011.1 protein AED:0.34 eAED:0.52 QI:0|0.5|0.66|1|0|0.33|3|0|133; (*GB) gi|357481505|ref|XP_003611038.1| (e_value=2e-57) hypothetical protein MTR_5g009740 [Medicago truncatula];; (*TAIR) AT5G41650.1 (e_value=1e-52) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr5:16654956-16655578 FORWARD LENGTH=117;; (*ITAG) Solyc11g062280.1.1 (e_value=1e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46281466-46286302 transcript_region:SL2.40ch11:46281466..46286302+ functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- B4FKA3_MAIZE); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; NbS00044170g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.93|0.85|1|0.90|0.91|34|286|1790; (*GB) gi|225435886|ref|XP_002265928.1| (e_value=0.0) PREDICTED: proteasome-associated protein ECM29 homolog [Vitis vinifera];; (*SWP) sp|Q5VYK3|ECM29_HUMAN (e_value=0.0) Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29 PE=1 SV=2;; (*TAIR) AT2G26780.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:11410125-11423598 FORWARD LENGTH=1826;; (*ITAG) Solyc11g062310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46317049-46353476 transcript_region:SL2.40ch11:46317049..46353476- go_terms:GO:0005840,GO:0005488 functional_description:"Proteasome component ECM29 (AHRD V1 *--- C1GQT7_PARBA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005840,GO:0005488 NbS00062008g0004.1 protein AED:0.01 eAED:0.01 QI:39|1|0.66|1|1|1|3|42|577; (*GB) gi|147802324|emb|CAN61650.1| (e_value=4e-25) hypothetical protein VITISV_027795 [Vitis vinifera];; (*SWP) sp|Q41060|SBP65_PEA (e_value=4e-12) Seed biotin-containing protein SBP65 OS=Pisum sativum GN=SBP65 PE=1 SV=1;; (*ITAG) Solyc07g053360.2.1 (e_value=5e-94) genomic_reference:SL2.40ch07 gene_region:59144379-59146118 transcript_region:SL2.40ch07:59144379..59146118+ functional_description:"Seed biotin-containing protein SBP65 (AHRD V1 *--- SBP65_PEA); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00004630g0001.1 protein AED:0.14 eAED:0.21 QI:0|0|0|1|1|1|2|0|291; (*GB) gi|40645459|dbj|BAD06575.1| (e_value=2e-127) LEDI-5c protein [Lithospermum erythrorhizon];; (*SWP) sp|Q9XG54|OPR1_SOLLC (e_value=3e-124) 12-oxophytodienoate reductase 1 OS=Solanum lycopersicum GN=OPR1 PE=1 SV=1;; (*TAIR) AT1G76690.1 (e_value=6e-117) | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reductase 2 | chr1:28778976-28780355 FORWARD LENGTH=374;; (*ITAG) Solyc10g086220.1.1 (e_value=2e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64445388-64446720 transcript_region:SL2.40ch10:64445388..64446720- go_terms:GO:0008152,GO:0016491 functional_description:"Flavin oxidoreductase/NADH oxidase (AHRD V1 **-- A0YMI2_LYNSP); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0008152,GO:0016491 NbS00004630g0002.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.44|1|1|1|9|150|329; (*GB) gi|224098968|ref|XP_002311338.1| (e_value=6e-129) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPR7|UPS1_ARATH (e_value=6e-116) Ureide permease 1 OS=Arabidopsis thaliana GN=UPS1 PE=1 SV=1;; (*TAIR) AT2G03600.2 (e_value=9e-121) | Symbols: ATUPS3, UPS3 | ureide permease 3 | chr2:1097294-1098367 FORWARD LENGTH=279;; (*ITAG) Solyc01g010290.2.1 (e_value=4e-161) genomic_reference:SL2.40ch01 gene_region:5087121-5091624 transcript_region:SL2.40ch01:5087121..5091624- go_terms:GO:0005274,GO:0015505 functional_description:"Ureide permease 2 (AHRD V1 ***- B6U6B9_MAIZE); contains Interpro domain(s) IPR009834 Fatty acid elongase 3-ketoacyl-CoA synthase 1 "; GO:0005274,GO:0015505 NbS00004630g0003.1 protein AED:0.27 eAED:0.37 QI:0|0.66|0.25|1|1|1|4|97|258; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g008470.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00013853g0004.1 protein AED:0.41 eAED:0.43 QI:0|0|0|0.75|0.33|0.25|4|0|297; (*GB) gi|224054338|ref|XP_002298210.1| (e_value=3e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=8e-67) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT3G15890.1 (e_value=6e-68) | Symbols: | Protein kinase superfamily protein | chr3:5374389-5376114 FORWARD LENGTH=361;; (*ITAG) Solyc03g116760.2.1 (e_value=4e-134) genomic_reference:SL2.40ch03 gene_region:60099710-60104460 transcript_region:SL2.40ch03:60099710..60104460- go_terms:GO:0005515,GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase FEI 1 (AHRD V1 **** FEI1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00029013g0014.1 protein AED:0.11 eAED:0.11 QI:385|1|1|1|0.87|0.77|9|308|585; (*GB) gi|225426946|ref|XP_002266352.1| (e_value=0.0) PREDICTED: monocopper oxidase-like protein SKU5 [Vitis vinifera];; (*SWP) sp|Q8VXX5|SKS1_ARATH (e_value=0.0) Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1;; (*TAIR) AT4G25240.1 (e_value=0.0) | Symbols: SKS1 | SKU5 similar 1 | chr4:12930539-12933563 FORWARD LENGTH=589;; (*ITAG) Solyc03g083900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47371423-47375428 transcript_region:SL2.40ch03:47371423..47375428- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00029013g0010.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|253796258|gb|ACT35733.1| (e_value=2e-15) SLF-interacting SKP1 [Petunia x hybrida];; (*SWP) sp|Q71U00|SKP1_XENLA (e_value=1e-14) S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3;; (*TAIR) AT2G03170.1 (e_value=3e-15) | Symbols: ASK14, SK14 | SKP1-like 14 | chr2:961322-961771 FORWARD LENGTH=149;; (*ITAG) Solyc11g008400.1.1 (e_value=6e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00029013g0016.1 protein AED:0.07 eAED:0.07 QI:16|0.5|0|1|0.5|0.33|3|0|340; (*GB) gi|296084195|emb|CBI24583.3| (e_value=6e-135) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=4e-99) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G12260.1 (e_value=3e-100) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395;; (*ITAG) Solyc06g034340.1.1 (e_value=6e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20774519-20776461 transcript_region:SL2.40ch06:20774519..20776461- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9ICS8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00029013g0015.1 protein AED:0.09 eAED:0.61 QI:0|0|0|1|0|0|2|0|96 NbS00016719g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|255561084|ref|XP_002521554.1| (e_value=3e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G50900.1 (e_value=1e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66490.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18918122-18918466 FORWARD LENGTH=114;; (*ITAG) Solyc02g085010.1.1 (e_value=4e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00044985g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|93 NbS00002420g0011.1 protein AED:0.36 eAED:0.36 QI:0|1|0.83|1|0.4|0.5|6|356|113; (*GB) gi|356548121|ref|XP_003542452.1| (e_value=2e-30) PREDICTED: zinc finger HIT domain-containing protein 3-like [Glycine max];; (*TAIR) AT4G28820.2 (e_value=7e-22) | Symbols: | HIT-type Zinc finger family protein | chr4:14230815-14232287 REVERSE LENGTH=172;; (*ITAG) Solyc06g008020.2.1 (e_value=3e-40) genomic_reference:SL2.40ch06 gene_region:1860555-1864743 transcript_region:SL2.40ch06:1860555..1864743+ functional_description:"Zinc finger family protein (AHRD V1 ***- D7MD81_ARALY); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; NbS00002420g0010.1 protein AED:0.16 eAED:0.18 QI:161|0.8|0.71|0.95|0.85|0.85|21|356|1423; (*GB) gi|225437885|ref|XP_002265367.1| (e_value=0.0) PREDICTED: CLIP-associating protein-like [Vitis vinifera];; (*SWP) sp|A1A5K2|CLA1B_XENLA (e_value=4e-31) CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1;; (*TAIR) AT2G20190.1 (e_value=0.0) | Symbols: ATCLASP, CLASP | CLIP-associated protein | chr2:8711862-8718813 REVERSE LENGTH=1439;; (*ITAG) Solyc06g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1887416-1904125 transcript_region:SL2.40ch06:1887416..1904125- go_terms:GO:0005488 functional_description:"CLIP-associating protein 1-like (AHRD V1 *--- Q6KAI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00002420g0009.1 protein AED:0.20 eAED:0.22 QI:397|0.8|0.81|1|0.7|0.72|11|945|587; (*GB) gi|359480088|ref|XP_002263397.2| (e_value=1e-80) PREDICTED: transcription factor PIF1-like [Vitis vinifera];; (*SWP) sp|Q8GZM7|PIF1_ARATH (e_value=1e-42) Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1;; (*TAIR) AT2G20180.3 (e_value=1e-43) | Symbols: PIL5 | phytochrome interacting factor 3-like 5 | chr2:8704276-8706538 REVERSE LENGTH=478;; (*ITAG) Solyc06g008030.2.1 (e_value=8e-130) genomic_reference:SL2.40ch06 gene_region:1865425-1869982 transcript_region:SL2.40ch06:1865425..1869982- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0010313 NbS00057424g0005.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.66|1|1|3|0|229 NbS00012434g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.2|0.5|6|274|332; (*GB) gi|255537347|ref|XP_002509740.1| (e_value=2e-84) cleavage and polyadenylation specificity factor, putative [Ricinus communis];; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=2e-82) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT1G12760.1 (e_value=2e-83) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:4348728-4350512 FORWARD LENGTH=408;; (*ITAG) Solyc12g056400.1.1 (e_value=2e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47682895-47685829 transcript_region:SL2.40ch12:47682895..47685829+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00012434g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|0|0.33|3|0|105; (*GB) gi|255576426|ref|XP_002529105.1| (e_value=2e-51) Thiopurine S-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q93V78|TMT1_BRAOL (e_value=3e-45) Thiocyanate methyltransferase 1 OS=Brassica oleracea GN=TMT1 PE=1 SV=1;; (*TAIR) AT2G43910.1 (e_value=5e-45) | Symbols: ATHOL1, HOL1 | HARMLESS TO OZONE LAYER 1 | chr2:18184658-18186951 REVERSE LENGTH=227;; (*ITAG) Solyc08g014600.2.1 (e_value=1e-61) genomic_reference:SL2.40ch08 gene_region:4711061-4717787 transcript_region:SL2.40ch08:4711061..4717787- go_terms:GO:0018708 functional_description:"Thiopurine S-methyltransferase family protein expressed (AHRD V1 **** Q10AR3_ORYSJ); contains Interpro domain(s) IPR008854 Thiopurine S-methyltransferase "; GO:0018708 NbS00001249g0007.1 protein AED:0.18 eAED:0.24 QI:69|0.5|0.2|1|0.75|0.6|5|0|305; (*GB) gi|678547|gb|AAA65637.1| (e_value=1e-109) peroxidase [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=4e-93) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=3e-94) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=7e-123) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00001249g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.90|0.75|1|0.81|0.83|12|414|442; (*GB) gi|225447336|ref|XP_002274263.1| (e_value=4e-86) PREDICTED: zinc finger CCCH domain-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q6H7U2|C3H13_ORYSJ (e_value=3e-50) Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1;; (*TAIR) AT3G21810.1 (e_value=1e-38) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr3:7684852-7688360 FORWARD LENGTH=437;; (*ITAG) Solyc12g005770.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:415079-426833 transcript_region:SL2.40ch12:415079..426833- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 13 (AHRD V1 ***- C3H13_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00042218g0006.1 protein AED:0.04 eAED:0.04 QI:216|1|1|1|1|1|6|531|156; (*GB) gi|255574019|ref|XP_002527927.1| (e_value=4e-88) abc transporter, putative [Ricinus communis];; (*SWP) sp|Q8RY46|AB26B_ARATH (e_value=8e-80) ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1;; (*TAIR) AT1G70610.1 (e_value=6e-81) | Symbols: ATTAP1, TAP1 | transporter associated with antigen processing protein 1 | chr1:26622086-26626331 FORWARD LENGTH=700;; (*ITAG) Solyc12g070280.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:55486255-55488702 transcript_region:SL2.40ch12:55486255..55488702+ go_terms:GO:0017111,GO:0016887 functional_description:"Lipid A export ATP-binding/permease protein MsbA (AHRD V1 ***- B9NVE8_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00042218g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|0.75|0.8|5|226|372; (*GB) gi|225443886|ref|XP_002277705.1| (e_value=3e-102) PREDICTED: uncharacterized protein LOC100254825 [Vitis vinifera];; (*TAIR) AT1G30130.2 (e_value=1e-95) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1365 (InterPro:IPR010775); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:10587666-10589222 FORWARD LENGTH=311;; (*ITAG) Solyc05g053950.2.1 (e_value=1e-122) genomic_reference:SL2.40ch05 gene_region:63111561-63115533 transcript_region:SL2.40ch05:63111561..63115533+ functional_description:"Plasmid partition ParA protein (AHRD V1 ***- B8KJV3_9GAMM); contains Interpro domain(s) IPR010775 Protein of unknown function DUF1365 "; NbS00058467g0003.1 protein AED:0.01 eAED:0.01 QI:60|0.75|0.8|1|0.25|0.6|5|3|242; (*GB) gi|186970563|gb|ACC99356.1| (e_value=1e-64) lyrate [Solanum lycopersicum];; (*SWP) sp|Q6S591|JAG_ARATH (e_value=8e-30) Zinc finger protein JAGGED OS=Arabidopsis thaliana GN=JAG PE=2 SV=1;; (*TAIR) AT1G68480.1 (e_value=6e-31) | Symbols: JAG | C2H2 and C2HC zinc fingers superfamily protein | chr1:25684543-25685932 REVERSE LENGTH=253;; (*ITAG) Solyc05g009380.2.1 (e_value=2e-66) genomic_reference:SL2.40ch05 gene_region:3536207-3540567 transcript_region:SL2.40ch05:3536207..3540567- go_terms:GO:0005622 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *--- D8SQF8_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00020068g0004.1 protein AED:0.22 eAED:0.22 QI:95|0.83|0.71|1|0.83|0.85|7|0|402; (*GB) gi|122230824|sp|Q10PP8.1|MTP4_ORYSJ (e_value=0.0) RecName: Full=Metal tolerance protein 4; Short=OsMTP4;; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=0.0) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=0.0) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc03g052990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19544673-19547281 transcript_region:SL2.40ch03:19544673..19547281+ go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 **-- FIEF_CITK8); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00003547g0001.1 protein AED:0.14 eAED:0.14 QI:584|1|1|1|0.66|0.75|4|291|282; (*GB) gi|224134647|ref|XP_002321874.1| (e_value=4e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYP4|BAG3_ARATH (e_value=2e-70) BAG family molecular chaperone regulator 3 OS=Arabidopsis thaliana GN=BAG3 PE=1 SV=1;; (*TAIR) AT5G07220.1 (e_value=2e-71) | Symbols: ATBAG3, BAG3 | BCL-2-associated athanogene 3 | chr5:2265545-2266720 REVERSE LENGTH=303;; (*ITAG) Solyc08g080320.2.1 (e_value=1e-154) genomic_reference:SL2.40ch08 gene_region:60810732-60813054 transcript_region:SL2.40ch08:60810732..60813054- go_terms:GO:0005515 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 **** B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0005515 NbS00003547g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|4|0|532; (*GB) gi|350538321|ref|NP_001234849.1| (e_value=0.0) hexose transporter 1 [Solanum lycopersicum];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc08g080300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60780667-60783435 transcript_region:SL2.40ch08:60780667..60783435+ go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00003547g0012.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|280; (*GB) gi|255537279|ref|XP_002509706.1| (e_value=2e-122) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=1e-29) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT4G23030.1 (e_value=1e-88) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc08g080310.1.1 (e_value=3e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60786990-60788474 transcript_region:SL2.40ch08:60786990..60788474+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00013939g0001.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|1|1|4|0|218; (*GB) gi|297792513|ref|XP_002864141.1| (e_value=9e-39) hypothetical protein ARALYDRAFT_918231 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=3e-13) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G12570.1 (e_value=2e-26) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:4278192-4280753 REVERSE LENGTH=572;; (*ITAG) Solyc06g035580.2.1 (e_value=7e-40) genomic_reference:SL2.40ch06 gene_region:21287092-21293012 transcript_region:SL2.40ch06:21287092..21293012- go_terms:GO:0016614,GO:0016491,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- C0G363_9RHIZ); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0016491,GO:0006066,GO:0050660 NbS00030225g0001.1 protein AED:0.14 eAED:0.14 QI:631|0.5|0.66|1|0|0.66|3|1302|314; (*GB) gi|147846786|emb|CAN78503.1| (e_value=2e-48) hypothetical protein VITISV_023071 [Vitis vinifera];; (*SWP) sp|Q9LYZ2|FBL80_ARATH (e_value=6e-26) Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1;; (*TAIR) AT5G02930.1 (e_value=5e-27) | Symbols: | F-box/RNI-like superfamily protein | chr5:682577-684480 FORWARD LENGTH=469;; (*ITAG) Solyc02g079090.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:38290040-38292676 transcript_region:SL2.40ch02:38290040..38292676+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030225g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.25|0.6|1|0.25|0.6|5|99|308; (*GB) gi|224064667|ref|XP_002301534.1| (e_value=6e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXB6|LIP4_ARATH (e_value=2e-89) GDSL esterase/lipase LIP-4 OS=Arabidopsis thaliana GN=LIP4 PE=2 SV=1;; (*TAIR) AT1G56670.1 (e_value=2e-90) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:21241688-21243965 FORWARD LENGTH=373;; (*ITAG) Solyc01g005610.2.1 (e_value=7e-165) genomic_reference:SL2.40ch01 gene_region:427617-430354 transcript_region:SL2.40ch01:427617..430354+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g09390 (AHRD V1 ***- GDL2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00022550g0003.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.25|1|0.33|0.5|4|0|229; (*GB) gi|12330698|gb|AAG52887.1|AF333386_1 (e_value=1e-64) beta-expansin-like protein [Nicotiana tabacum];; (*SWP) sp|Q6H677|EXB14_ORYSJ (e_value=1e-60) Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1;; (*TAIR) AT2G45110.1 (e_value=1e-53) | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin B4 | chr2:18599575-18601237 FORWARD LENGTH=259;; (*ITAG) Solyc01g090820.1.1 (e_value=1e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76287385-76288548 transcript_region:SL2.40ch01:76287385..76288548+ go_terms:GO:0005576 functional_description:"Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00059288g0003.1 protein AED:0.02 eAED:0.02 QI:193|1|0.66|1|1|1|3|0|390; (*GB) gi|255537789|ref|XP_002509961.1| (e_value=4e-88) ring finger protein, putative [Ricinus communis];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=2e-62) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT5G53110.1 (e_value=1e-84) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc08g082310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62306796-62311786 transcript_region:SL2.40ch08:62306796..62311786- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00032571g0013.1 protein AED:0.05 eAED:0.13 QI:0|0.66|0.25|1|0.33|0.75|4|0|297; (*GB) gi|225439086|ref|XP_002265705.1| (e_value=6e-57) PREDICTED: uncharacterized protein LOC100255300 [Vitis vinifera];; (*TAIR) AT5G01970.1 (e_value=1e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:373014-374651 REVERSE LENGTH=351;; (*ITAG) Solyc10g074800.1.1 (e_value=3e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57836904-57839499 transcript_region:SL2.40ch10:57836904..57839499+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032571g0008.1 protein AED:0.16 eAED:0.16 QI:410|1|1|1|0.9|0.81|11|436|425; (*GB) gi|255582036|ref|XP_002531815.1| (e_value=0.0) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT5G01990.1 (e_value=0.0) | Symbols: | Auxin efflux carrier family protein | chr5:377373-379600 REVERSE LENGTH=431;; (*ITAG) Solyc10g074790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57831763-57835787 transcript_region:SL2.40ch10:57831763..57835787+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier family protein (AHRD V1 ***- D7M6D2_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0016021 NbS00032571g0011.1 protein AED:0.35 eAED:0.35 QI:262|0.88|0.7|0.9|0.66|0.5|10|0|484; (*GB) gi|225439088|ref|XP_002265744.1| (e_value=0.0) PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q96EX2|RNFT2_HUMAN (e_value=1e-33) RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2;; (*TAIR) AT5G01960.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc10g074810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57843108-57849636 transcript_region:SL2.40ch10:57843108..57849636+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger and transmembrane domain-containing protein 2 (AHRD V1 **-- RNFT2_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00045270g0002.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc10g049530.1.1 (e_value=5e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00060987g0007.1 protein AED:0.25 eAED:0.26 QI:174|0|0.33|1|0.5|0.66|3|0|295; (*GB) gi|350534880|ref|NP_001234676.1| (e_value=0.0) uncharacterized protein LOC543709 [Solanum lycopersicum];; (*SWP) sp|Q3ZBY7|DEGS1_BOVIN (e_value=6e-101) Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1;; (*TAIR) AT4G04930.1 (e_value=3e-170) | Symbols: DES-1-LIKE | fatty acid desaturase family protein | chr4:2509236-2510918 FORWARD LENGTH=332;; (*ITAG) Solyc10g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3056358-3059101 transcript_region:SL2.40ch10:3056358..3059101+ go_terms:GO:0042284 functional_description:"Sphingolipid delta 4 desaturase (AHRD V1 **** Q5AJX2_CANAL); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site "; GO:0042284 NbS00060987g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=1e-66) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=5e-38) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT5G53750.1 (e_value=5e-41) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc03g006470.2.1 (e_value=1e-86) genomic_reference:SL2.40ch03 gene_region:1055923-1057636 transcript_region:SL2.40ch03:1055923..1057636- functional_description:"CBS domain containing protein-like (AHRD V1 **-- Q6ZIB3_ORYSJ); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00025050g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.83|1|0.8|0.66|6|0|422; (*GB) gi|255559478|ref|XP_002520759.1| (e_value=3e-141) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LS23|ALMTD_ARATH (e_value=4e-77) Aluminum-activated malate transporter 13 OS=Arabidopsis thaliana GN=ALMT13 PE=2 SV=1;; (*TAIR) AT5G46600.1 (e_value=3e-78) | Symbols: | Aluminium activated malate transporter family protein | chr5:18907849-18910742 REVERSE LENGTH=539;; (*ITAG) Solyc09g065070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58474183-58477833 transcript_region:SL2.40ch09:58474183..58477833- go_terms:GO:0008509 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 **-* Q6EPG5_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0008509 NbS00032821g0011.1 protein AED:0.17 eAED:0.17 QI:244|1|0.5|1|1|0.75|4|0|368; (*GB) gi|28875539|dbj|BAC65222.1| (e_value=3e-13) hypothetical protein [Daucus carota];; (*ITAG) Solyc06g050880.2.1 (e_value=1e-110) genomic_reference:SL2.40ch06 gene_region:30221194-30224955 transcript_region:SL2.40ch06:30221194..30224955+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022165g0003.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.75|0|0.25|4|0|429; (*GB) gi|224128025|ref|XP_002320222.1| (e_value=5e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39204|RAP1_ARATH (e_value=9e-38) Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2;; (*TAIR) AT1G32640.1 (e_value=7e-39) | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623;; (*ITAG) Solyc10g009290.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:3284486-3285841 transcript_region:SL2.40ch10:3284486..3285841- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00041585g0006.1 protein AED:0.09 eAED:0.09 QI:184|1|1|1|0.75|0.6|5|626|545; (*GB) gi|224074739|ref|XP_002304448.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQ10|1A110_ARATH (e_value=0.0) Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1;; (*TAIR) AT1G62960.1 (e_value=0.0) | Symbols: ACS10 | ACC synthase 10 | chr1:23318271-23320229 REVERSE LENGTH=557;; (*ITAG) Solyc08g079750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60401804-60405384 transcript_region:SL2.40ch08:60401804..60405384- go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q6U5H3_ROSHC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0016847 NbS00041585g0009.1 protein AED:0.10 eAED:0.10 QI:31|0.5|0.33|1|0|0.33|3|0|875; (*GB) gi|224071617|ref|XP_002303543.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGE4|Y1124_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1;; (*TAIR) AT1G12460.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:4247703-4250444 FORWARD LENGTH=882;; (*ITAG) Solyc08g079740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60398063-60401307 transcript_region:SL2.40ch08:60398063..60401307+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00029951g0009.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|0.5|0.66|3|0|193; (*GB) gi|4589880|dbj|BAA76903.1| (e_value=3e-97) homeobox 9 [Nicotiana tabacum];; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=4e-34) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.1 (e_value=3e-35) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc03g112740.1.1 (e_value=3e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57131920-57134069 transcript_region:SL2.40ch03:57131920..57134069- go_terms:GO:0005634 functional_description:"Homeobox transcription factor KN2 (Fragment) (AHRD V1 *-*- Q0QV71_PICAB); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634 NbS00029951g0015.1 protein AED:0.05 eAED:0.09 QI:0|0.2|0.16|1|0.2|0.16|6|0|510; (*GB) gi|297733755|emb|CBI15002.3| (e_value=5e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=1e-85) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1;; (*TAIR) AT5G40380.1 (e_value=8e-87) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc03g112730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57124382-57127098 transcript_region:SL2.40ch03:57124382..57127098- go_terms:GO:0004702,GO:0019199 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702,GO:0019199 NbS00029951g0016.1 protein AED:0.12 eAED:0.12 QI:0|1|0.72|1|0.7|0.72|11|0|1065; (*GB) gi|297733757|emb|CBI15004.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G48200.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:17832949-17837371 REVERSE LENGTH=1088;; (*ITAG) Solyc03g112760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57157046-57165040 transcript_region:SL2.40ch03:57157046..57165040+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029951g0010.1 protein AED:0.03 eAED:0.18 QI:54|0|0|1|0|0|2|0|95; (*GB) gi|4589880|dbj|BAA76903.1| (e_value=4e-61) homeobox 9 [Nicotiana tabacum];; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=2e-39) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.1 (e_value=1e-40) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc05g005090.2.1 (e_value=1e-38) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbC26061039g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.85|0.75|1|0|0.25|8|440|484; (*GB) gi|357112047|ref|XP_003557821.1| (e_value=0.0) PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Brachypodium distachyon];; (*SWP) sp|O60231|DHX16_HUMAN (e_value=1e-148) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2;; (*TAIR) AT1G32490.2 (e_value=0.0) | Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034;; (*ITAG) Solyc03g115390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbC26061039g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|297733904|emb|CBI15151.3| (e_value=5e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q767K6|DHX16_PIG (e_value=1e-71) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1;; (*TAIR) AT1G32490.2 (e_value=1e-80) | Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034;; (*ITAG) Solyc03g115390.2.1 (e_value=2e-90) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00016026g0003.1 protein AED:0.33 eAED:0.33 QI:141|1|0.5|1|1|1|2|0|192; (*GB) gi|319433449|gb|ADV57642.1| (e_value=8e-43) copper binding protein 7 [Gossypium hirsutum];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=4e-32) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=2e-42) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065260.1.1 (e_value=4e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58916089-58917302 transcript_region:SL2.40ch09:58916089..58917302- go_terms:GO:0005515 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00016026g0012.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0|0.5|2|0|95; (*GB) gi|356497468|ref|XP_003517582.1| (e_value=7e-31) PREDICTED: mavicyanin-like [Glycine max];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=1e-20) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=5e-30) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065250.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58911653-58913742 transcript_region:SL2.40ch09:58911653..58913742- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6TCC4_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00016026g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.88|0.7|1|0.66|0.7|10|362|289; (*GB) gi|356536011|ref|XP_003536534.1| (e_value=1e-99) PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor, chloroplastic-like [Glycine max];; (*SWP) sp|P37706|RRFC_DAUCA (e_value=2e-93) Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2;; (*TAIR) AT3G63190.1 (e_value=5e-87) | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome recycling factor, chloroplast precursor | chr3:23342861-23344640 REVERSE LENGTH=275;; (*ITAG) Solyc09g065270.2.1 (e_value=8e-126) genomic_reference:SL2.40ch09 gene_region:58937051-58943716 transcript_region:SL2.40ch09:58937051..58943716+ go_terms:GO:0008135,GO:0005507 functional_description:"Ribosome recycling factor (AHRD V1 **** B6TQ52_MAIZE); contains Interpro domain(s) IPR015998 Ribosome recycling factor, bacterial-like "; GO:0008135,GO:0005507 NbS00033285g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|111073735|dbj|BAF02556.1| (e_value=3e-53) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G19020.1 (e_value=6e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6568142-6568402 FORWARD LENGTH=86;; (*ITAG) Solyc05g006390.1.1 (e_value=5e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:1028793-1029047 transcript_region:SL2.40ch05:1028793..1029047- functional_description:"Unknown Protein (AHRD V1)"; NbS00022127g0003.1 protein AED:0.11 eAED:0.11 QI:207|1|1|1|0|0.2|5|287|185; (*GB) gi|224146326|ref|XP_002325966.1| (e_value=8e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28DS3|RN170_XENTR (e_value=2e-25) RING finger protein 170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1;; (*TAIR) AT1G72175.1 (e_value=1e-80) | Symbols: | RING/U-box protein with domain of unknown function (DUF 1232) | chr1:27157978-27159359 FORWARD LENGTH=185;; (*ITAG) Solyc11g027810.1.1 (e_value=4e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:15583237-15585790 transcript_region:SL2.40ch11:15583237..15585790- functional_description:"RING finger protein 170 (AHRD V1 ***- B5X7S9_SALSA); contains Interpro domain(s) IPR010652 Protein of unknown function DUF1232 "; NbS00040389g0005.1 protein AED:0.23 eAED:0.27 QI:0|0.62|0.55|1|0.75|0.77|9|0|359; (*GB) gi|224069760|ref|XP_002326407.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=5e-62) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G52990.2 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr3:19649336-19652237 FORWARD LENGTH=474;; (*ITAG) Solyc09g008840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2258920-2266051 transcript_region:SL2.40ch09:2258920..2266051- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A9P7U5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00045503g0004.1 protein AED:0.22 eAED:0.81 QI:0|1|0|1|1|1|2|0|164 NbS00039664g0008.1 protein AED:0.11 eAED:0.11 QI:111|1|1|1|1|1|12|218|655; (*GB) gi|359482948|ref|XP_003632863.1| (e_value=0.0) PREDICTED: probable sulfate transporter 3.4-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LW86|SUT34_ARATH (e_value=0.0) Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1;; (*TAIR) AT3G15990.1 (e_value=0.0) | Symbols: SULTR3;4 | sulfate transporter 3;4 | chr3:5427081-5430679 FORWARD LENGTH=653;; (*ITAG) Solyc03g120250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62751314-62755593 transcript_region:SL2.40ch03:62751314..62755593- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00039664g0003.1 protein AED:0.39 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|224059108|ref|XP_002299719.1| (e_value=1e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=5e-46) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=4e-47) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=3e-71) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00003213g0006.1 protein AED:0.21 eAED:0.21 QI:0|1|0.87|1|1|1|8|0|725; (*GB) gi|359486237|ref|XP_002264491.2| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G09600.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3108617-3111318 FORWARD LENGTH=714;; (*ITAG) Solyc01g103350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83739841-83746530 transcript_region:SL2.40ch01:83739841..83746530+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 13 (AHRD V1 *-*- CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003213g0004.1 protein AED:0.51 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|160; (*GB) gi|15224778|ref|NP_179534.1| (e_value=2e-16) beta-1,3-glucanase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=3e-17) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT2G19440.1 (e_value=5e-19) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:8418164-8419806 REVERSE LENGTH=478;; (*ITAG) Solyc10g078510.1.1 (e_value=2e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59632402-59635099 transcript_region:SL2.40ch10:59632402..59635099+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00003213g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|295; (*GB) gi|225465222|ref|XP_002266046.1| (e_value=2e-114) PREDICTED: uncharacterized protein LOC100260885 [Vitis vinifera];; (*TAIR) AT1G09610.1 (e_value=2e-111) | Symbols: | Protein of unknown function (DUF579) | chr1:3111789-3112637 FORWARD LENGTH=282;; (*ITAG) Solyc01g103360.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:83747188-83748220 transcript_region:SL2.40ch01:83747188..83748220+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VV14_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00030049g0004.1 protein AED:0.11 eAED:0.12 QI:7|0.83|0.57|1|0.5|0.28|7|0|482; (*GB) gi|356542830|ref|XP_003539868.1| (e_value=7e-151) PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Glycine max];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=1e-133) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT1G61900.1 (e_value=8e-135) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22882508-22884722 REVERSE LENGTH=433;; (*ITAG) Solyc07g052360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58197046-58200556 transcript_region:SL2.40ch07:58197046..58200556+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00006087g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.25|0.2|1|0.25|0.4|5|0|613; (*GB) gi|255586158|ref|XP_002533739.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00056697g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=9e-65) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=6e-39) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=4e-40) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=3e-54) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008984g0014.1 protein AED:0.12 eAED:0.12 QI:9|0.75|0.55|1|0.37|0.55|9|0|599; (*GB) gi|334186440|ref|NP_192917.3| (e_value=0.0) calcineurin-like phosphoesterase domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT4G11800.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:7093666-7098519 REVERSE LENGTH=1013;; (*ITAG) Solyc04g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61395376-61403327 transcript_region:SL2.40ch04:61395376..61403327- go_terms:GO:0004722 functional_description:"Calcineurin-like phosphoesterase family protein (AHRD V1 *-*- A9G786_SORC5); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00008984g0009.1 protein AED:0.16 eAED:0.16 QI:384|1|0.91|1|0.81|0.75|12|260|701; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=2e-66) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=2e-160) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc12g088940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62566327-62571104 transcript_region:SL2.40ch12:62566327..62571104- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008984g0013.1 protein AED:0.19 eAED:0.19 QI:258|0.8|0.83|1|0.6|0.33|6|363|334; (*GB) gi|224123470|ref|XP_002330322.1| (e_value=2e-144) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15730.1 (e_value=3e-145) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc12g088910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62541117-62543852 transcript_region:SL2.40ch12:62541117..62543852+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005705g0004.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|224100751|ref|XP_002311998.1| (e_value=7e-67) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39120.1 (e_value=1e-62) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:16321794-16322957 FORWARD LENGTH=387;; (*ITAG) Solyc10g079160.1.1 (e_value=5e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60090902-60092131 transcript_region:SL2.40ch10:60090902..60092131+ go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00005705g0006.1 protein AED:0.43 eAED:0.48 QI:0|0.5|0.33|1|1|0.66|3|0|85; (*GB) gi|388509426|gb|AFK42779.1| (e_value=2e-41) unknown [Lotus japonicus];; (*TAIR) AT2G01490.1 (e_value=4e-41) | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221316-223187 FORWARD LENGTH=283;; (*ITAG) Solyc05g007970.2.1 (e_value=2e-50) genomic_reference:SL2.40ch05 gene_region:2390017-2393710 transcript_region:SL2.40ch05:2390017..2393710+ go_terms:GO:0005515 functional_description:"Phytanoyl-CoA dioxygenase (AHRD V1 ***- B6R8S2_9RHOB); contains Interpro domain(s) IPR008775 Phytanoyl-CoA dioxygenase "; GO:0005515 NbS00019460g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|3|0|760; (*GB) gi|359474852|ref|XP_003631542.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=0.0) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019460g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0.5|0.66|3|0|225; (*GB) gi|356509521|ref|XP_003523496.1| (e_value=8e-57) PREDICTED: subtilisin-like protease-like [Glycine max];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-27) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=1e-54) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=1e-67) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00022318g0112.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.28|0.85|0.66|0.71|7|0|438 NbS00022318g0113.1 protein AED:0.45 eAED:0.47 QI:0|0.4|0.5|0.66|0.4|0.66|6|0|316 NbS00022318g0114.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|261 NbS00045817g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|255585307|ref|XP_002533352.1| (e_value=6e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G59880.1 (e_value=6e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44010.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22121069-22121446 FORWARD LENGTH=125;; (*ITAG) Solyc12g017960.1.1 (e_value=1e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:8877855-8878118 transcript_region:SL2.40ch12:8877855..8878118- functional_description:"Unknown Protein (AHRD V1)"; NbS00011107g0007.1 protein AED:0.05 eAED:0.05 QI:149|1|1|1|0.5|0.33|3|317|86; (*GB) gi|2982432|emb|CAA18240.1| (e_value=2e-39) putative protein [Arabidopsis thaliana];; (*TAIR) AT4G20150.1 (e_value=2e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10888529-10889500 REVERSE LENGTH=81;; (*ITAG) Solyc10g005230.2.1 (e_value=2e-47) genomic_reference:SL2.40ch10 gene_region:184303-188826 transcript_region:SL2.40ch10:184303..188826+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011107g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0|2|0|330; (*GB) gi|33320067|gb|AAQ05796.1|AF477956_1 (e_value=2e-88) transcription factor Myb [Capsicum annuum];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=4e-48) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT3G12720.1 (e_value=4e-61) | Symbols: ATY53, ATMYB67, MYB67 | myb domain protein 67 | chr3:4043407-4044522 REVERSE LENGTH=307;; (*ITAG) Solyc10g005240.2.1 (e_value=3e-132) genomic_reference:SL2.40ch10 gene_region:189610-191141 transcript_region:SL2.40ch10:189610..191141- go_terms:GO:0003677,GO:0045449 functional_description:"Transcription factor Myb (AHRD V1 **-- Q71KV1_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00038999g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.94|0.95|1|0.84|0.9|20|140|1427; (*GB) gi|75331994|sp|Q949G3.1|PDR1_NICPL (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NpPDR1;; (*SWP) sp|Q949G3|PDR1_NICPL (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66270226-66277538 transcript_region:SL2.40ch09:66270226..66277538+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00047972g0001.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|99; (*GB) gi|225437695|ref|XP_002279878.1| (e_value=2e-30) PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Vitis vinifera];; (*SWP) sp|P62981|RS27A_SOLTU (e_value=1e-30) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=4e-31) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc12g098940.1.1 (e_value=3e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64627947-64628417 transcript_region:SL2.40ch12:64627947..64628417- go_terms:GO:0005840 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005840 NbS00055238g0003.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|307; (*GB) gi|224089414|ref|XP_002308717.1| (e_value=4e-114) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q3E6P4|FB95_ARATH (e_value=4e-86) F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1;; (*TAIR) AT2G02240.1 (e_value=3e-87) | Symbols: MEE66 | F-box family protein | chr2:592359-593602 REVERSE LENGTH=320;; (*ITAG) Solyc05g055870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64483049-64485380 transcript_region:SL2.40ch05:64483049..64485380- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH)"; GO:0030246 NbS00000828g0015.1 protein AED:0.33 eAED:0.44 QI:9|0|0.5|1|0|1|2|293|58 NbS00000828g0016.1 protein AED:0.27 eAED:0.30 QI:136|0.88|0.8|1|0.88|0.9|10|0|349; (*GB) gi|225453378|ref|XP_002271102.1| (e_value=2e-86) PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera];; (*SWP) sp|Q96CP6|GRM1A_HUMAN (e_value=1e-22) GRAM domain-containing protein 1A OS=Homo sapiens GN=GRAMD1A PE=1 SV=2;; (*TAIR) AT1G02120.1 (e_value=3e-72) | Symbols: VAD1 | GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598;; (*ITAG) Solyc01g090230.2.1 (e_value=3e-151) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00048729g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|342; (*GB) gi|297743458|emb|CBI36325.3| (e_value=2e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XI36|MBD10_ARATH (e_value=3e-44) Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana GN=MBD10 PE=1 SV=1;; (*TAIR) AT1G15340.1 (e_value=2e-45) | Symbols: MBD10 | methyl-CPG-binding domain 10 | chr1:5275895-5277474 REVERSE LENGTH=384;; (*ITAG) Solyc06g068140.2.1 (e_value=3e-111) genomic_reference:SL2.40ch06 gene_region:38624657-38627697 transcript_region:SL2.40ch06:38624657..38627697+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00048729g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|161; (*GB) gi|356519309|ref|XP_003528315.1| (e_value=2e-29) PREDICTED: uncharacterized protein LOC100775686 [Glycine max];; (*TAIR) AT3G15830.1 (e_value=3e-28) | Symbols: | phosphatidic acid phosphatase-related / PAP2-related | chr3:5354974-5356327 FORWARD LENGTH=296;; (*ITAG) Solyc06g068150.2.1 (e_value=1e-40) genomic_reference:SL2.40ch06 gene_region:38627482-38628951 transcript_region:SL2.40ch06:38627482..38628951- go_terms:GO:0004142 functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 ***- Q9LVZ7_ARATH)"; GO:0004142 NbS00012246g0001.1 protein AED:0.56 eAED:0.56 QI:0|0.25|0|0.4|1|1|5|0|190; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=3e-32) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=2e-28) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094620.1.1 (e_value=7e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49781139-49787966 transcript_region:SL2.40ch02:49781139..49787966- functional_description:"Unknown Protein (AHRD V1)"; NbS00044954g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|302143050|emb|CBI20345.3| (e_value=4e-58) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G61105.1 (e_value=8e-50) | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:22513616-22514492 REVERSE LENGTH=188;; (*ITAG) Solyc07g063360.1.1 (e_value=7e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63073291-63074369 transcript_region:SL2.40ch07:63073291..63074369+ go_terms:GO:0031224 functional_description:"Tir, resistance protein fragment"; GO:0031224 NbS00014641g0006.1 protein AED:0.05 eAED:0.06 QI:32|0.83|0.71|1|0.66|0.57|7|94|850; (*GB) gi|224107447|ref|XP_002314482.1| (e_value=4e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23370.1 (e_value=1e-51) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:8357613-8360792 FORWARD LENGTH=811;; (*ITAG) Solyc09g090290.2.1 (e_value=7e-148) genomic_reference:SL2.40ch09 gene_region:65163696-65170418 transcript_region:SL2.40ch09:65163696..65170418+ functional_description:"Genomic DNA chromosome 3 P1 clone MLM24 (AHRD V1 *--- Q9LW59_ARATH)"; NbS00012052g0001.1 protein AED:0.05 eAED:0.05 QI:76|1|0.5|1|0|0.5|2|0|673; (*GB) gi|224099789|ref|XP_002311619.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SKY8|HSP7H_ARATH (e_value=0.0) Heat shock 70 kDa protein 8 OS=Arabidopsis thaliana GN=HSP70-8 PE=2 SV=1;; (*TAIR) AT2G32120.2 (e_value=0.0) | Symbols: HSP70T-2 | heat-shock protein 70T-2 | chr2:13651720-13653411 REVERSE LENGTH=563;; (*ITAG) Solyc09g075950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63079410-63081140 transcript_region:SL2.40ch09:63079410..63081140+ go_terms:GO:0042623 functional_description:"Heat shock protein 1 (AHRD V1 ***- B6SXY0_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623 NbS00019482g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.71|0.62|1|0.71|0.62|8|257|415; (*GB) gi|356544808|ref|XP_003540839.1| (e_value=6e-180) PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Glycine max];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-81) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=1e-171) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc12g005850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:481937-488981 transcript_region:SL2.40ch12:481937..488981- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00019482g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|809|81; (*GB) gi|225447296|ref|XP_002279761.1| (e_value=7e-36) PREDICTED: septum-promoting GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=2e-21) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.2 (e_value=3e-38) | Symbols: SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7645954 FORWARD LENGTH=248;; (*ITAG) Solyc12g005840.1.1 (e_value=2e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:474797-477406 transcript_region:SL2.40ch12:474797..477406- go_terms:GO:0007264,GO:0015031,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 *-*- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005622 NbS00033731g0004.1 protein AED:0.17 eAED:0.17 QI:179|1|1|1|0.5|1|3|446|237; (*GB) gi|239056164|emb|CAQ58595.1| (e_value=9e-60) unknown protein [Vitis vinifera];; (*TAIR) AT5G16550.1 (e_value=6e-39) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405526-5406641 FORWARD LENGTH=249;; (*ITAG) Solyc11g011760.1.1 (e_value=2e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4741690-4742971 transcript_region:SL2.40ch11:4741690..4742971+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFC9_ARATH)"; NbS00053393g0004.1 protein AED:0.03 eAED:0.03 QI:191|1|1|1|0|0.5|2|621|208; (*GB) gi|255539487|ref|XP_002510808.1| (e_value=3e-68) steroid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9XFM6|MSBP1_ARATH (e_value=6e-55) Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2;; (*TAIR) AT5G52240.1 (e_value=4e-56) | Symbols: MSBP1, ATMP1, AtMAPR5 | membrane steroid binding protein 1 | chr5:21213121-21214557 FORWARD LENGTH=220;; (*ITAG) Solyc03g025950.2.1 (e_value=2e-98) genomic_reference:SL2.40ch03 gene_region:7764256-7767163 transcript_region:SL2.40ch03:7764256..7767163+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 ***- C0NU44_AJECG); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00050980g0001.1 protein AED:0.09 eAED:0.09 QI:3|1|1|1|0.85|0.87|8|296|508; (*GB) gi|224131962|ref|XP_002321221.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99P21|MUTYH_MOUSE (e_value=6e-100) A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2 SV=2;; (*TAIR) AT4G12740.1 (e_value=8e-162) | Symbols: | HhH-GPD base excision DNA repair family protein | chr4:7494578-7497596 REVERSE LENGTH=630;; (*ITAG) Solyc09g018850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:17632059-17636347 transcript_region:SL2.40ch09:17632059..17636347+ go_terms:GO:0004844 functional_description:"A/G-specific adenine glycosylase family protein (AHRD V1 **** Q2QW21_ORYSJ); contains Interpro domain(s) IPR005760 A/G-specific adenine glycosylase MutY, bacterial form "; GO:0004844 NbS00050980g0002.1 protein AED:0.08 eAED:0.18 QI:0|0.66|0.25|1|1|1|4|0|208; (*GB) gi|224131954|ref|XP_002321219.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04039.1 (e_value=1e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:1333464-1334438 FORWARD LENGTH=199;; (*ITAG) Solyc09g018890.2.1 (e_value=2e-77) genomic_reference:SL2.40ch09 gene_region:17714897-17716024 transcript_region:SL2.40ch09:17714897..17716024+ functional_description:"Genome sequencing data contig C320 (AHRD V1 ***- A8YJ83_MICAE)"; NbS00050980g0013.1 protein AED:0.37 eAED:0.41 QI:277|0.8|0.5|1|0.8|0.83|6|145|155; (*ITAG) Solyc06g082830.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:44784361-44787512 transcript_region:SL2.40ch06:44784361..44787512- functional_description:"Iron-stress related protein (AHRD V1 ***- B4FBU5_MAIZE)"; NbS00007192g0003.1 protein AED:0.33 eAED:0.38 QI:49|0|0|1|0|0|2|0|83; (*ITAG) Solyc01g010440.2.1 (e_value=2e-13) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00025903g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|57014017|ref|YP_173488.1| (e_value=2e-81) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=7e-83) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-77) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-84) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00041943g0003.1 protein AED:0.11 eAED:0.11 QI:307|0.8|0.83|1|1|1|6|0|370; (*GB) gi|357445679|ref|XP_003593117.1| (e_value=7e-113) Auxin-induced protein 5NG4 [Medicago truncatula];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-47) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G68170.1 (e_value=3e-72) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:25551925-25554258 FORWARD LENGTH=356;; (*ITAG) Solyc01g104750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84887229-84889802 transcript_region:SL2.40ch01:84887229..84889802- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00028284g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|0|1|2|0|398; (*GB) gi|357438065|ref|XP_003589308.1| (e_value=2e-32) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=8e-25) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=6e-26) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc03g061650.1.1 (e_value=6e-115) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:28919799-28922209 transcript_region:SL2.40ch03:28919799..28922209- functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 *-*- FBL47_ARATH); contains Interpro domain(s) IPR006566 FBD-like "; NbS00028284g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.9|0.90|1|0.7|0.72|11|355|642; (*GB) gi|156763838|emb|CAO99121.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=6e-117) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT1G26190.1 (e_value=0.0) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:9057285-9060433 REVERSE LENGTH=674;; (*ITAG) Solyc05g010340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4488286-4494949 transcript_region:SL2.40ch05:4488286..4494949+ go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0016301 NbS00017688g0001.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|1|1|2|0|222; (*GB) gi|350537499|ref|NP_001234040.1| (e_value=4e-97) steroid 5 alpha reductase DET2 [Solanum lycopersicum];; (*SWP) sp|Q38944|DET2_ARATH (e_value=6e-76) Probable steroid reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=2 SV=2;; (*TAIR) AT2G38050.1 (e_value=4e-77) | Symbols: DET2, DWF6, ATDET2 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:15921303-15922176 REVERSE LENGTH=262;; (*ITAG) Solyc10g086500.1.1 (e_value=8e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64629234-64630007 transcript_region:SL2.40ch10:64629234..64630007+ go_terms:GO:0016020,GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein expressed (AHRD V1 ***- Q53NE6_ORYSJ); contains Interpro domain(s) IPR016636 3-oxo-5-alpha-steroid 4-dehydrogenase IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016020,GO:0016021 NbS00017688g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|193527452|gb|ACF19791.1| (e_value=7e-137) NAC transcription factor [Nicotiana tabacum];; (*TAIR) AT2G33480.1 (e_value=5e-13) | Symbols: ANAC041, NAC041 | NAC domain containing protein 41 | chr2:14181275-14182247 FORWARD LENGTH=268;; (*ITAG) Solyc01g021730.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00011546g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|13|253|1435; (*GB) gi|147857575|emb|CAN81002.1| (e_value=0.0) hypothetical protein VITISV_006993 [Vitis vinifera];; (*SWP) sp|Q9NVI1|FANCI_HUMAN (e_value=2e-44) Fanconi anemia group I protein OS=Homo sapiens GN=FANCI PE=1 SV=4;; (*TAIR) AT5G49110.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19900203-19905925 FORWARD LENGTH=1469;; (*ITAG) Solyc01g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67092823-67099945 transcript_region:SL2.40ch01:67092823..67099945- functional_description:"Fanconi anemia group I protein (AHRD V1 *--- FANCI_HUMAN)"; NbS00011546g0009.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|414|215; (*GB) gi|356556098|ref|XP_003546364.1| (e_value=2e-52) PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max];; (*SWP) sp|Q22799|DYL1_CAEEL (e_value=5e-41) Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1;; (*TAIR) AT4G15930.1 (e_value=4e-51) | Symbols: | Dynein light chain type 1 family protein | chr4:9036344-9037825 FORWARD LENGTH=123;; (*ITAG) Solyc01g066590.2.1 (e_value=2e-68) genomic_reference:SL2.40ch01 gene_region:67086017-67089572 transcript_region:SL2.40ch01:67086017..67089572- go_terms:GO:0008092,GO:0042803 functional_description:"Dynein light chain 2 cytoplasmic (AHRD V1 ***- B5XH01_SALSA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0008092,GO:0042803 NbS00005256g0015.1 protein AED:0.09 eAED:0.19 QI:0|0|0|1|1|1|2|0|978; (*GB) gi|359494251|ref|XP_002265136.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246258 [Vitis vinifera];; (*TAIR) AT5G56220.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:22754871-22757792 FORWARD LENGTH=973;; (*ITAG) Solyc07g066180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64884958-64887425 transcript_region:SL2.40ch07:64884958..64887425+ go_terms:GO:0017111 functional_description:"ATP/GTP-binding protein (AHRD V1 *--- A8L7D9_FRASN); contains Interpro domain(s) IPR003593 ATPase, AAA+ type, core "; GO:0017111 NbS00005256g0005.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|225463526|ref|XP_002265177.1| (e_value=2e-46) PREDICTED: PRA1 family protein G2 [Vitis vinifera];; (*SWP) sp|Q9FH16|PR1G2_ARATH (e_value=6e-47) PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1;; (*TAIR) AT5G56230.1 (e_value=5e-48) | Symbols: PRA1.G2 | prenylated RAB acceptor 1.G2 | chr5:22758768-22759328 REVERSE LENGTH=186;; (*ITAG) Solyc07g066190.1.1 (e_value=9e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64888622-64889203 transcript_region:SL2.40ch07:64888622..64889203- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00005256g0016.1 protein AED:0.17 eAED:0.26 QI:36|0|0|0.75|0.66|0.75|4|0|1211; (*GB) gi|224122072|ref|XP_002330534.1| (e_value=2e-116) predicted protein [Populus trichocarpa];; (*TAIR) AT5G56250.1 (e_value=4e-38) | Symbols: HAP8 | hapless 8 | chr5:22768918-22771869 REVERSE LENGTH=811;; (*ITAG) Solyc07g066200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64894379-64899799 transcript_region:SL2.40ch07:64894379..64899799- functional_description:"Genomic DNA chromosome 5 TAC clone K24C1 (AHRD V1 *-*- Q9FH15_ARATH)"; NbS00005256g0017.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|1|1|2|0|283; (*ITAG) Solyc07g066200.2.1 (e_value=9e-81) genomic_reference:SL2.40ch07 gene_region:64894379-64899799 transcript_region:SL2.40ch07:64894379..64899799- functional_description:"Genomic DNA chromosome 5 TAC clone K24C1 (AHRD V1 *-*- Q9FH15_ARATH)"; NbS00006986g0002.1 protein AED:0.07 eAED:0.10 QI:66|1|0.85|1|0.66|0.57|7|1665|388; (*GB) gi|303305632|gb|ADM13586.1| (e_value=1e-160) S-domain receptor-like kinase [Nicotiana tabacum];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=1e-88) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.1 (e_value=8e-90) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc02g079540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38647401-38650439 transcript_region:SL2.40ch02:38647401..38650439+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00006986g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.42|1|0.83|0.71|7|0|808; (*GB) gi|359496521|ref|XP_002262970.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Vitis vinifera];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc02g079530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38641755-38644912 transcript_region:SL2.40ch02:38641755..38644912+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00027807g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|3|243|168; (*GB) gi|224119454|ref|XP_002318076.1| (e_value=3e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XBA5|DI196_ORYSJ (e_value=1e-16) Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp. japonica GN=DI19-6 PE=2 SV=1;; (*ITAG) Solyc03g112160.2.1 (e_value=1e-91) genomic_reference:SL2.40ch03 gene_region:56711050-56713651 transcript_region:SL2.40ch03:56711050..56713651- go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 5 (AHRD V1 ***- DI195_ORYSJ); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00027807g0002.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0|2|953|413; (*GB) gi|68566313|sp|Q40450.2|EFTUA_NICSY (e_value=0.0) RecName: Full=Elongation factor TuA, chloroplastic; Short=EF-TuA; Flags: Precursor;; (*SWP) sp|P68158|EFTU_TOBAC (e_value=0.0) Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1;; (*TAIR) AT4G20360.1 (e_value=0.0) | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase homolog E1B | chr4:10990036-10991466 FORWARD LENGTH=476;; (*ITAG) Solyc03g112150.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56698575-56700008 transcript_region:SL2.40ch03:56698575..56700008+ go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** D7MFK2_ARALY); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00027807g0010.1 protein AED:0.16 eAED:0.16 QI:343|1|0.88|1|0.75|0.66|9|0|659; (*GB) gi|225456878|ref|XP_002277287.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase WNK2 [Vitis vinifera];; (*SWP) sp|Q65X23|WNK2_ORYSJ (e_value=0.0) Probable serine/threonine-protein kinase WNK2 OS=Oryza sativa subsp. japonica GN=WNK2 PE=2 SV=1;; (*TAIR) AT3G48260.1 (e_value=0.0) | Symbols: WNK3 | with no lysine (K) kinase 3 | chr3:17873012-17875220 REVERSE LENGTH=516;; (*ITAG) Solyc03g112140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56690058-56697440 transcript_region:SL2.40ch03:56690058..56697440+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00012030g0003.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|1|1|2|0|403; (*GB) gi|224096191|ref|XP_002310568.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT4G39840.1 (e_value=5e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18485268-18486623 FORWARD LENGTH=451;; (*ITAG) Solyc03g078640.1.1 (e_value=5e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44805863-44807317 transcript_region:SL2.40ch03:44805863..44807317- functional_description:"Unknown Protein (AHRD V1)"; NbC23305057g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|53; (*GB) gi|109727320|gb|ABG45945.1| (e_value=7e-31) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=4e-14) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=2e-26) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=7e-32) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00040088g0001.1 protein AED:0.01 eAED:0.01 QI:198|1|1|1|0|0|2|178|116; (*GB) gi|297737105|emb|CBI26306.3| (e_value=9e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2V3I3|EPFL4_ARATH (e_value=1e-27) EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=3 SV=1;; (*TAIR) AT4G14723.1 (e_value=9e-29) | Symbols: | BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8440167-8440693 FORWARD LENGTH=109;; (*ITAG) Solyc09g082620.2.1 (e_value=4e-46) genomic_reference:SL2.40ch09 gene_region:63743394-63744775 transcript_region:SL2.40ch09:63743394..63744775+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 4 (AHRD V1 *--- EPFL4_ARATH)"; NbS00024905g0007.1 protein AED:0.13 eAED:0.13 QI:180|0.33|0.5|1|0.66|0.75|4|271|956; (*GB) gi|225464790|ref|XP_002268064.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera];; (*SWP) sp|O81028|PP171_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=2 SV=1;; (*TAIR) AT2G26790.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:11425270-11427669 REVERSE LENGTH=799;; (*ITAG) Solyc05g012920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6046907-6049585 transcript_region:SL2.40ch05:6046907..6049585- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEU3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00024905g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.22|0.4|0.7|0.22|0.6|10|461|272; (*GB) gi|351722823|ref|NP_001237769.1| (e_value=1e-52) uncharacterized protein LOC100499907 [Glycine max];; (*SWP) sp|Q54ND3|UXT_DICDI (e_value=3e-17) Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389 PE=3 SV=1;; (*TAIR) AT1G26660.1 (e_value=1e-35) | Symbols: | Prefoldin chaperone subunit family protein | chr1:9212298-9213765 FORWARD LENGTH=152;; (*ITAG) Solyc05g012930.2.1 (e_value=1e-61) genomic_reference:SL2.40ch05 gene_region:6049696-6053668 transcript_region:SL2.40ch05:6049696..6053668+ go_terms:GO:0048487 functional_description:"Protein UXT (AHRD V1 ***- B6TWV7_MAIZE); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0048487 NbS00005555g0011.1 protein AED:0.47 eAED:0.44 QI:171|0.77|0.7|0.9|0.22|0.2|10|0|333; (*GB) gi|359478321|ref|XP_002275974.2| (e_value=2e-132) PREDICTED: DNA polymerase I-like [Vitis vinifera];; (*SWP) sp|P00582|DPO1_ECOLI (e_value=6e-24) DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1;; (*TAIR) AT3G52050.1 (e_value=5e-116) | Symbols: | 5'-3' exonuclease family protein | chr3:19305228-19309398 FORWARD LENGTH=425;; (*ITAG) Solyc03g062910.2.1 (e_value=3e-72) genomic_reference:SL2.40ch03 gene_region:29845433-29859257 transcript_region:SL2.40ch03:29845433..29859257+ go_terms:GO:0008409 functional_description:"5&apos-3&apos exonuclease N-terminal resolvase-like domain containing protein expressed (AHRD V1 *--- Q10PN8_ORYSJ); contains Interpro domain(s) IPR020046 5'-3' exonuclease, N-terminal resolvase-like domain "; GO:0008409 NbS00005555g0012.1 protein AED:0.19 eAED:0.16 QI:186|1|0.75|1|1|0.91|12|0|570; (*GB) gi|149941649|dbj|BAF64846.1| (e_value=0.0) Cdc27B [Nicotiana tabacum];; (*SWP) sp|Q8LGU6|CD27B_ARATH (e_value=0.0) Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1;; (*TAIR) AT2G20000.1 (e_value=0.0) | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744;; (*ITAG) Solyc03g061600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00013007g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|287|650; (*GB) gi|147866080|emb|CAN80959.1| (e_value=1e-144) hypothetical protein VITISV_037562 [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=1e-69) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=1e-70) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc01g094820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77988011-77992084 transcript_region:SL2.40ch01:77988011..77992084- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 **-- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00043750g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.5|0.75|0|0.25|4|380|201; (*GB) gi|255541492|ref|XP_002511810.1| (e_value=1e-57) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT3G61200.1 (e_value=6e-47) | Symbols: | Thioesterase superfamily protein | chr3:22657599-22658350 REVERSE LENGTH=188;; (*ITAG) Solyc01g091560.2.1 (e_value=5e-95) genomic_reference:SL2.40ch01 gene_region:76930674-76931868 transcript_region:SL2.40ch01:76930674..76931868+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** D7LS72_ARALY); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00043750g0011.1 protein AED:0.39 eAED:0.39 QI:84|0.5|1|1|0|0|3|273|132; (*GB) gi|357514705|ref|XP_003627641.1| (e_value=5e-32) hypothetical protein MTR_8g032450 [Medicago truncatula];; (*TAIR) AT3G61200.1 (e_value=3e-23) | Symbols: | Thioesterase superfamily protein | chr3:22657599-22658350 REVERSE LENGTH=188;; (*ITAG) Solyc01g091550.2.1 (e_value=3e-68) genomic_reference:SL2.40ch01 gene_region:76927152-76930016 transcript_region:SL2.40ch01:76927152..76930016+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** B6UFY3_MAIZE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00043750g0001.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.66|1|1|3|0|118; (*ITAG) Solyc01g091560.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:76930674-76931868 transcript_region:SL2.40ch01:76930674..76931868+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** D7LS72_ARALY); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00043750g0009.1 protein AED:0.29 eAED:0.29 QI:162|1|0.90|1|0.8|0.90|11|0|365; (*GB) gi|356504906|ref|XP_003521235.1| (e_value=0.0) PREDICTED: cell division protein ftsY homolog [Glycine max];; (*SWP) sp|O80842|CFTSY_ARATH (e_value=0.0) Cell division protein FtsY homolog, chloroplastic OS=Arabidopsis thaliana GN=CPFTSY PE=1 SV=2;; (*TAIR) AT2G45770.1 (e_value=0.0) | Symbols: CPFTSY, FRD4 | signal recognition particle receptor protein, chloroplast (FTSY) | chr2:18851248-18853402 FORWARD LENGTH=366;; (*ITAG) Solyc01g091580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76934096-76939715 transcript_region:SL2.40ch01:76934096..76939715- go_terms:GO:0005525,GO:0017111,GO:0006614 functional_description:"Signal recognition particle-docking protein FtsY (AHRD V1 ***- A7H885_ANADF); contains Interpro domain(s) IPR004390 Cell division transporter substrate-binding protein FtsY "; GO:0005525,GO:0017111,GO:0006614 NbS00051134g0009.1 protein AED:0.04 eAED:0.06 QI:137|0.5|0.4|1|0.75|0.8|5|0|648; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-47) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00051134g0012.1 protein AED:0.41 eAED:0.43 QI:18|1|0.33|1|1|0.66|3|0|168; (*GB) gi|225454180|ref|XP_002272142.1| (e_value=4e-47) PREDICTED: uncharacterized protein LOC100265498 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=3e-30) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc01g094460.2.1 (e_value=3e-70) genomic_reference:SL2.40ch01 gene_region:77689811-77694407 transcript_region:SL2.40ch01:77689811..77694407- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00051134g0007.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|245; (*GB) gi|357502141|ref|XP_003621359.1| (e_value=8e-90) Ripening-related protein [Medicago truncatula];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=2e-55) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc01g094440.1.1 (e_value=2e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:77683954-77684523 transcript_region:SL2.40ch01:77683954..77684523+ functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00000356g0001.1 protein AED:0.33 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|222; (*ITAG) Solyc04g018260.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11187511-11188311 transcript_region:SL2.40ch04:11187511..11188311+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010626g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.8|0.66|1|1|1|6|294|448; (*GB) gi|359488192|ref|XP_002274329.2| (e_value=0.0) PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Vitis vinifera];; (*SWP) sp|Q9ZUE0|PEK12_ARATH (e_value=5e-56) Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2;; (*TAIR) AT5G37790.1 (e_value=3e-168) | Symbols: | Protein kinase superfamily protein | chr5:15008433-15011025 REVERSE LENGTH=552;; (*ITAG) Solyc02g063330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29975679-29978433 transcript_region:SL2.40ch02:29975679..29978433+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 *-** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00010626g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|59798468|sp|Q8VWY7.1|POLC2_TOBAC (e_value=3e-54) RecName: Full=Polcalcin Nic t 2; AltName: Full=Calcium-binding pollen allergen Nic t 2; AltName: Allergen=Nic t 2;; (*SWP) sp|Q8VWY7|POLC2_TOBAC (e_value=8e-56) Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1;; (*TAIR) AT3G03430.1 (e_value=1e-35) | Symbols: | Calcium-binding EF-hand family protein | chr3:814481-814732 FORWARD LENGTH=83;; (*ITAG) Solyc02g063340.1.1 (e_value=6e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29979134-29979394 transcript_region:SL2.40ch02:29979134..29979394- go_terms:GO:0005509 functional_description:"Calmodulin 4 (AHRD V1 **-- Q6WEH7_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00010626g0012.1 protein AED:0.07 eAED:0.07 QI:436|0.75|0.4|1|0.75|0.6|5|0|260; (*GB) gi|255579281|ref|XP_002530486.1| (e_value=1e-65) ARF GTPase activator, putative [Ricinus communis];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=1e-32) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT5G37740.1 (e_value=2e-61) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:14992148-14993431 FORWARD LENGTH=168;; (*ITAG) Solyc02g063370.2.1 (e_value=3e-82) genomic_reference:SL2.40ch02 gene_region:30013289-30014670 transcript_region:SL2.40ch02:30013289..30014670- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KD31_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00010626g0006.1 protein AED:0.37 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|359495800|ref|XP_003635094.1| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100853951 [Vitis vinifera];; (*ITAG) Solyc02g063380.1.1 (e_value=1e-46) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:30047158-30047472 transcript_region:SL2.40ch02:30047158..30047472- functional_description:"Unknown Protein (AHRD V1)"; NbC26281995g0002.1 protein AED:0.72 eAED:0.88 QI:0|0|0|0.28|0.83|0.71|7|0|318 NbS00011211g0013.1 protein AED:0.33 eAED:0.33 QI:152|0|0.5|0.5|0|0|2|71|64 NbS00011211g0001.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|1|1|2|0|180; (*ITAG) Solyc01g017760.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021446g0007.1 protein AED:0.10 eAED:0.11 QI:0|0|0|0.66|0|0.33|3|0|257; (*GB) gi|225448910|ref|XP_002265627.1| (e_value=1e-69) PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q6DJI9|ZCRB1_XENLA (e_value=3e-45) Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1;; (*TAIR) AT3G10400.1 (e_value=2e-55) | Symbols: | RNA recognition motif and CCHC-type zinc finger domains containing protein | chr3:3232636-3233421 FORWARD LENGTH=261;; (*ITAG) Solyc11g008290.1.1 (e_value=2e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2511302-2512120 transcript_region:SL2.40ch11:2511302..2512120+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"RNA binding protein (AHRD V1 ***- B6U3T0_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0008270,GO:0000166 NbS00021446g0002.1 protein AED:0.37 eAED:0.37 QI:269|0.5|0.66|1|0|0.33|3|0|266; (*GB) gi|225448962|ref|XP_002269306.1| (e_value=7e-91) PREDICTED: uncharacterized protein LOC100258145 [Vitis vinifera];; (*TAIR) AT2G39170.1 (e_value=3e-61) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc11g008310.1.1 (e_value=7e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00001008g0015.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.4|0.66|6|47|268; (*GB) gi|356495695|ref|XP_003516709.1| (e_value=5e-53) PREDICTED: uncharacterized protein LOC100779471 [Glycine max];; (*TAIR) AT5G41470.1 (e_value=5e-45) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:16593953-16595419 FORWARD LENGTH=277;; (*ITAG) Solyc12g056190.1.1 (e_value=1e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:47508349-47510598 transcript_region:SL2.40ch12:47508349..47510598- functional_description:"Nuclear transport factor 2 (NTF2)-like protein (AHRD V1 ***- Q67TV5_ORYSJ)"; NbS00001008g0014.1 protein AED:0.58 eAED:0.58 QI:0|0.5|0.4|0.8|0.25|0.6|5|0|230; (*GB) gi|297742323|emb|CBI34472.3| (e_value=3e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MC7|PYL9_ARATH (e_value=2e-95) Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1;; (*TAIR) AT1G01360.1 (e_value=1e-96) | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187;; (*ITAG) Solyc12g055990.1.1 (e_value=4e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47336796-47340728 transcript_region:SL2.40ch12:47336796..47340728+ functional_description:"Abscisic acid receptor PYL9 (AHRD V1 **-- PYL9_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00001008g0008.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.25|1|1|4|0|96 NbS00005565g0001.1 protein AED:0.23 eAED:0.25 QI:152|1|0.5|1|1|1|2|0|162; (*GB) gi|297797101|ref|XP_002866435.1| (e_value=1e-87) ANAC100/ATNAC5 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=6e-89) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=5e-90) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc02g088180.2.1 (e_value=5e-98) genomic_reference:SL2.40ch02 gene_region:44915098-44916628 transcript_region:SL2.40ch02:44915098..44916628+ go_terms:GO:0003700 functional_description:"NAC domain protein (AHRD V1 ***- C0KLH1_PONTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00005565g0006.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|21105757|gb|AAM34777.1|AF509877_1 (e_value=1e-35) nam-like protein 14, partial [Petunia x hybrida];; (*ITAG) Solyc02g088180.2.1 (e_value=6e-60) genomic_reference:SL2.40ch02 gene_region:44915098-44916628 transcript_region:SL2.40ch02:44915098..44916628+ go_terms:GO:0003700 functional_description:"NAC domain protein (AHRD V1 ***- C0KLH1_PONTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00009821g0009.1 protein AED:0.02 eAED:0.03 QI:18|1|0|1|1|1|2|0|358; (*GB) gi|33320067|gb|AAQ05796.1|AF477956_1 (e_value=2e-142) transcription factor Myb [Capsicum annuum];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=2e-65) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT3G12720.1 (e_value=7e-79) | Symbols: ATY53, ATMYB67, MYB67 | myb domain protein 67 | chr3:4043407-4044522 REVERSE LENGTH=307;; (*ITAG) Solyc02g082040.2.1 (e_value=8e-133) genomic_reference:SL2.40ch02 gene_region:40359966-40361271 transcript_region:SL2.40ch02:40359966..40361271+ go_terms:GO:0003677,GO:0045449 functional_description:"Transcription factor Myb (AHRD V1 **-- Q71KV1_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00009821g0008.1 protein AED:0.12 eAED:0.12 QI:283|0.8|0.66|1|0.8|0.66|6|426|1123; (*GB) gi|37781278|gb|AAP44391.1| (e_value=0.0) nematode resistance-like protein [Solanum tuberosum];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=0.0) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G17680.1 (e_value=5e-177) | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr5:5822999-5827153 FORWARD LENGTH=1294;; (*ITAG) Solyc02g082050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40368266-40374062 transcript_region:SL2.40ch02:40368266..40374062+ go_terms:GO:0030275,GO:0000166 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030275,GO:0000166 NbS00003765g0013.1 protein AED:0.06 eAED:0.06 QI:267|0.8|0.5|0.83|1|1|6|0|802; (*GB) gi|224065982|ref|XP_002301992.1| (e_value=1e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXI5|IQD32_ARATH (e_value=1e-41) Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3;; (*TAIR) AT1G19870.1 (e_value=9e-43) | Symbols: iqd32 | IQ-domain 32 | chr1:6895400-6898539 REVERSE LENGTH=794;; (*ITAG) Solyc04g081210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62803374-62809165 transcript_region:SL2.40ch04:62803374..62809165+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein IQ (AHRD V1 *--* A8CF59_BRACM); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00003765g0011.1 protein AED:0.26 eAED:0.26 QI:185|1|1|1|0.5|0.42|7|456|231; (*GB) gi|225458034|ref|XP_002277373.1| (e_value=1e-83) PREDICTED: uncharacterized protein LOC100264366 [Vitis vinifera];; (*TAIR) AT1G75670.2 (e_value=6e-74) | Symbols: | DNA-directed RNA polymerases | chr1:28415378-28416505 REVERSE LENGTH=196;; (*ITAG) Solyc05g054140.2.1 (e_value=2e-145) genomic_reference:SL2.40ch05 gene_region:63243125-63246714 transcript_region:SL2.40ch05:63243125..63246714+ go_terms:GO:0006350 functional_description:"Nucleic acid-binding OB-fold (AHRD V1 ***- A2Q5X5_MEDTR); contains Interpro domain(s) IPR005576 RNA polymerase Rpb7, N-terminal "; GO:0006350 NbS00003765g0012.1 protein AED:0.23 eAED:0.25 QI:14|0|0|1|0|0.5|2|0|487; (*GB) gi|27450532|gb|AAO14627.1|AF467900_4 (e_value=0.0) hypothetical protein [Prunus persica];; (*TAIR) AT3G27230.1 (e_value=1e-152) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:10054224-10055456 FORWARD LENGTH=410;; (*ITAG) Solyc11g010580.2.1 (e_value=1e-161) genomic_reference:SL2.40ch11 gene_region:3652323-3654056 transcript_region:SL2.40ch11:3652323..3654056+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033070g0009.1 protein AED:0.27 eAED:0.27 QI:137|1|1|1|0|0|6|1146|191; (*GB) gi|225424301|ref|XP_002284666.1| (e_value=7e-75) PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera];; (*TAIR) AT1G70760.1 (e_value=9e-66) | Symbols: CRR23 | inorganic carbon transport protein-related | chr1:26687267-26688201 FORWARD LENGTH=191;; (*ITAG) Solyc05g026550.2.1 (e_value=2e-91) genomic_reference:SL2.40ch05 gene_region:41746834-41749832 transcript_region:SL2.40ch05:41746834..41749832- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit L (AHRD V1 *-*- Q05RD4_9SYNE); contains Interpro domain(s) IPR019654 NADH dehydrogenase, transmembrane subunit NdhL "; GO:0055114 NbS00033070g0001.1 protein AED:0.01 eAED:0.01 QI:90|1|0.5|1|0|0|2|0|142; (*GB) gi|296084828|emb|CBI27710.3| (e_value=4e-56) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g080150.1.1 (e_value=9e-76) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39036256-39036660 transcript_region:SL2.40ch02:39036256..39036660+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033070g0007.1 protein AED:0.13 eAED:0.13 QI:474|1|1|1|0.83|0.71|7|404|315; (*GB) gi|255553837|ref|XP_002517959.1| (e_value=3e-163) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03420.1 (e_value=2e-147) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc12g010730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3645491-3647850 transcript_region:SL2.40ch12:3645491..3647850- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00017229g0003.1 protein AED:0.27 eAED:0.27 QI:40|0|0|0.66|1|0.66|3|50|55 NbS00009781g0001.1 protein AED:0.19 eAED:0.19 QI:480|0|0.5|1|0|0.5|2|281|372; (*GB) gi|255537067|ref|XP_002509600.1| (e_value=2e-168) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT4G12240.1 (e_value=6e-145) | Symbols: | zinc finger (C2H2 type) family protein | chr4:7287895-7288989 FORWARD LENGTH=364; NbS00009781g0010.1 protein AED:0.36 eAED:0.44 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|339717983|gb|AEJ88779.1| (e_value=4e-40) cutin-deficient 1 protein [Solanum lycopersicum];; (*SWP) sp|Q9SVU5|GDL67_ARATH (e_value=6e-31) GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1;; (*TAIR) AT4G28780.1 (e_value=5e-32) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:14215603-14217159 FORWARD LENGTH=367;; (*ITAG) Solyc11g006250.1.1 (e_value=7e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1004368-1006899 transcript_region:SL2.40ch11:1004368..1006899+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00009781g0008.1 protein AED:0.03 eAED:0.03 QI:262|1|1|1|0|0.5|2|393|265; (*GB) gi|225449809|ref|XP_002275776.1| (e_value=5e-104) PREDICTED: trans-2,3-enoyl-CoA reductase [Vitis vinifera];; (*SWP) sp|Q55C17|TECR_DICDI (e_value=1e-18) Trans-2,3-enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1;; (*TAIR) AT5G16010.1 (e_value=2e-94) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr5:5227982-5229012 FORWARD LENGTH=268;; (*ITAG) Solyc11g006270.1.1 (e_value=3e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1009775-1012021 transcript_region:SL2.40ch11:1009775..1012021- go_terms:GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 ***- D7M7I5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016021 NbS00030236g0008.1 protein AED:0.41 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|101; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-33) hypothetical protein [Nicotiana tabacum]; NbS00030236g0007.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|76; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-20) hypothetical protein [Nicotiana tabacum]; NbS00030236g0006.1 protein AED:0.48 eAED:0.50 QI:0|0|0|1|0|0|2|0|72 NbS00018388g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|76 NbS00003024g0012.1 protein AED:0.14 eAED:0.14 QI:204|0|0.5|1|0|0|2|65|197; (*GB) gi|356546164|ref|XP_003541501.1| (e_value=6e-54) PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max];; (*SWP) sp|Q3E958|SHN3_ARATH (e_value=2e-54) Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1;; (*TAIR) AT5G25390.1 (e_value=5e-56) | Symbols: SHN2 | Integrase-type DNA-binding superfamily protein | chr5:8820637-8821741 FORWARD LENGTH=186;; (*ITAG) Solyc12g009490.1.1 (e_value=2e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2748974-2752098 transcript_region:SL2.40ch12:2748974..2752098- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 11 (AHRD V1 *-*- ERF76_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00003024g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.6|0.33|0.83|1|1|6|0|914; (*GB) gi|88193697|dbj|BAE79735.1| (e_value=0.0) phospholipase D alpha 2 [Arachis hypogaea];; (*SWP) sp|Q41142|PLDA1_RICCO (e_value=0.0) Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1;; (*TAIR) AT3G15730.1 (e_value=0.0) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc12g011170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4013435-4018305 transcript_region:SL2.40ch12:4013435..4018305+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00003024g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|0.66|3|0|1188; (*GB) gi|51989472|gb|AAU21242.1| (e_value=0.0) putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana];; (*SWP) sp|Q9SG02|RDR6_ARATH (e_value=0.0) RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1;; (*TAIR) AT3G49500.1 (e_value=0.0) | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196;; (*ITAG) Solyc04g014870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5125889-5130330 transcript_region:SL2.40ch04:5125889..5130330+ go_terms:GO:0003676 functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbS00003024g0013.1 protein AED:0.30 eAED:0.30 QI:92|0.75|0.8|1|0.5|0.8|5|345|192; (*GB) gi|90654968|gb|ABD96083.1| (e_value=2e-80) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT5G25360.2 (e_value=3e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc08g060860.2.1 (e_value=3e-75) genomic_reference:SL2.40ch08 gene_region:42837598-42842706 transcript_region:SL2.40ch08:42837598..42842706- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00003024g0015.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|167995454|gb|ACA13601.1| (e_value=8e-17) RNA-dependent RNA polymerase [Nicotiana attenuata];; (*ITAG) Solyc04g014870.2.1 (e_value=3e-15) genomic_reference:SL2.40ch04 gene_region:5125889-5130330 transcript_region:SL2.40ch04:5125889..5130330+ go_terms:GO:0003676 functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbS00007401g0003.1 protein AED:0.21 eAED:0.21 QI:193|1|0.87|1|1|1|8|0|361; (*GB) gi|296083855|emb|CBI24243.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G13500.3 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:4338676-4340827 FORWARD LENGTH=358;; (*ITAG) Solyc11g064850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47171999-47179068 transcript_region:SL2.40ch11:47171999..47179068+ functional_description:"Os04g0226400 protein (Fragment) (AHRD V1 *-*- C7J118_ORYSJ)"; NbS00000359g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|690; (*GB) gi|224077634|ref|XP_002305338.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P38478|YMF40_MARPO (e_value=3e-24) Uncharacterized mitochondrial protein ymf40 OS=Marchantia polymorpha GN=YMF40 PE=4 SV=1;; (*TAIR) AT1G30010.1 (e_value=0.0) | Symbols: | Intron maturase, type II family protein | chr1:10513194-10515329 FORWARD LENGTH=711; NbS00000359g0011.1 protein AED:0.44 eAED:0.51 QI:0|0.25|0.4|0.8|0.5|0.6|5|379|160; (*GB) gi|225463454|ref|XP_002275908.1| (e_value=2e-25) PREDICTED: high mobility group B protein 14 [Vitis vinifera];; (*TAIR) AT2G34450.1 (e_value=4e-11) | Symbols: | HMG-box (high mobility group) DNA-binding family protein | chr2:14527918-14529448 REVERSE LENGTH=151; NbS00012379g0001.1 protein AED:0.17 eAED:0.27 QI:0|0|0|1|1|1|2|0|110; (*GB) gi|255566181|ref|XP_002524078.1| (e_value=2e-22) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q8RX29|ATL70_ARATH (e_value=9e-17) RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1;; (*TAIR) AT2G35910.1 (e_value=7e-18) | Symbols: | RING/U-box superfamily protein | chr2:15073225-15073878 REVERSE LENGTH=217;; (*ITAG) Solyc10g081790.1.1 (e_value=3e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62109426-62109998 transcript_region:SL2.40ch10:62109426..62109998+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033257g0005.1 protein AED:0.29 eAED:0.29 QI:277|1|1|1|0.9|0.90|11|510|295; (*GB) gi|350538629|ref|NP_001234096.1| (e_value=1e-161) tobamovirus multiplication 1 homolog [Solanum lycopersicum];; (*TAIR) AT2G02180.1 (e_value=1e-138) | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303;; (*ITAG) Solyc04g008540.2.1 (e_value=2e-164) genomic_reference:SL2.40ch04 gene_region:2157991-2165032 transcript_region:SL2.40ch04:2157991..2165032- go_terms:GO:0005515,GO:0046790 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515,GO:0046790 NbS00000761g0001.1 protein AED:0.21 eAED:0.21 QI:263|0.66|0.71|1|0.5|0.42|7|0|478; (*GB) gi|225447041|ref|XP_002269614.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Vitis vinifera];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=1e-153) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58050410-58054055 transcript_region:SL2.40ch07:58050410..58054055- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00000761g0005.1 protein AED:0.41 eAED:0.45 QI:808|0|0.25|0.75|1|1|4|0|128 NbS00027418g0001.1 protein AED:0.00 eAED:0.00 QI:174|1|0.5|1|0|0|2|0|61 NbS00019051g0006.1 protein AED:0.40 eAED:0.40 QI:48|0|1|1|1|1|2|213|62 NbS00019051g0005.1 protein AED:0.34 eAED:0.35 QI:32|1|0.75|1|0.33|0.75|4|0|103; (*GB) gi|255572836|ref|XP_002527350.1| (e_value=3e-30) mads box protein, putative [Ricinus communis];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=1e-22) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=2e-18) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc12g088090.1.1 (e_value=4e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62014329-62019387 transcript_region:SL2.40ch12:62014329..62019387+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 *-*- Q9M2M4_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00031165g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|0|1|0|77; (*GB) gi|326500550|dbj|BAK06364.1| (e_value=2e-20) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|P49689|RS30_ARATH (e_value=2e-13) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=1e-14) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=4e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00001989g0014.1 protein AED:0.23 eAED:0.31 QI:60|0|0|1|0.66|0.25|4|0|224; (*ITAG) Solyc01g073870.2.1 (e_value=5e-37) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00001989g0018.1 protein AED:0.77 eAED:0.77 QI:0|0|0.25|0.25|1|1|4|0|72; (*GB) gi|312282233|dbj|BAJ33982.1| (e_value=7e-19) unnamed protein product [Thellungiella halophila];; (*TAIR) AT5G63860.1 (e_value=1e-19) | Symbols: UVR8 | Regulator of chromosome condensation (RCC1) family protein | chr5:25554821-25558587 REVERSE LENGTH=440;; (*ITAG) Solyc05g018620.2.1 (e_value=1e-31) genomic_reference:SL2.40ch05 gene_region:22619375-22635138 transcript_region:SL2.40ch05:22619375..22635138- go_terms:GO:0003682 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682 NbS00001989g0015.1 protein AED:0.35 eAED:0.87 QI:246|0|0|0.25|0.85|0.75|8|0|187; (*GB) gi|5478530|gb|AAD43920.1|AF130441_1 (e_value=5e-68) UVB-resistance protein UVR8 [Arabidopsis thaliana];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=5e-25) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G63860.1 (e_value=3e-69) | Symbols: UVR8 | Regulator of chromosome condensation (RCC1) family protein | chr5:25554821-25558587 REVERSE LENGTH=440;; (*ITAG) Solyc05g018620.2.1 (e_value=1e-40) genomic_reference:SL2.40ch05 gene_region:22619375-22635138 transcript_region:SL2.40ch05:22619375..22635138- go_terms:GO:0003682 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682 NbS00044232g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|0.5|0.66|3|0|295; (*GB) gi|134303286|gb|ABO70986.1| (e_value=3e-145) gibberellin 2-oxidase 5 [Nicotiana tabacum];; (*SWP) sp|Q9XG83|G2OX_PHACN (e_value=1e-106) Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1;; (*TAIR) AT1G30040.1 (e_value=2e-97) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc02g070430.2.1 (e_value=2e-135) genomic_reference:SL2.40ch02 gene_region:34734811-34736850 transcript_region:SL2.40ch02:34734811..34736850- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase 1 (AHRD V1 **** A7LCJ5_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00036236g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|0|0.5|2|0|165; (*GB) gi|224061883|ref|XP_002300646.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=3e-16) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT4G15390.1 (e_value=4e-17) | Symbols: | HXXXD-type acyl-transferase family protein | chr4:8792941-8794281 REVERSE LENGTH=446;; (*ITAG) Solyc01g008300.1.1 (e_value=4e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2405018-2406951 transcript_region:SL2.40ch01:2405018..2406951- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IAS9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00036236g0003.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|91 NbS00036386g0004.1 protein AED:0.04 eAED:0.04 QI:227|1|1|1|1|1|2|538|387; (*GB) gi|225467702|ref|XP_002272171.1| (e_value=6e-116) PREDICTED: uncharacterized protein LOC100251038 isoform 1 [Vitis vinifera];; (*TAIR) AT3G07310.1 (e_value=1e-108) | Symbols: | Protein of unknown function (DUF760) | chr3:2328057-2329677 REVERSE LENGTH=368;; (*ITAG) Solyc06g007560.1.1 (e_value=4e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1561713-1563890 transcript_region:SL2.40ch06:1561713..1563890- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q010E1_OSTTA); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00020326g0013.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|718; (*GB) gi|359475869|ref|XP_002283146.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252640 [Vitis vinifera];; (*SWP) sp|Q32PZ3|UN45A_RAT (e_value=1e-11) Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=0.0) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc08g029190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22914324-22916720 transcript_region:SL2.40ch08:22914324..22916720+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00020326g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|1|2|456|214; (*GB) gi|225430428|ref|XP_002285428.1| (e_value=2e-81) PREDICTED: uncharacterized protein LOC100266438 [Vitis vinifera];; (*TAIR) AT5G25280.2 (e_value=3e-50) | Symbols: | serine-rich protein-related | chr5:8773882-8774544 FORWARD LENGTH=220;; (*ITAG) Solyc07g007330.1.1 (e_value=9e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00020326g0011.1 protein AED:0.42 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|71 NbS00003273g0005.1 protein AED:0.38 eAED:0.49 QI:45|0.5|0|1|0.5|0|3|0|155; (*GB) gi|388491212|gb|AFK33672.1| (e_value=4e-77) unknown [Lotus japonicus];; (*SWP) sp|Q54W07|BUD32_DICDI (e_value=5e-33) Probable serine/threonine-protein kinase BUD32 homolog OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1;; (*TAIR) AT5G26110.1 (e_value=1e-71) | Symbols: | Protein kinase superfamily protein | chr5:9118239-9119352 REVERSE LENGTH=226;; (*ITAG) Solyc06g084160.2.1 (e_value=2e-84) genomic_reference:SL2.40ch06 gene_region:45662381-45666602 transcript_region:SL2.40ch06:45662381..45666602+ go_terms:GO:0004674,GO:0002039 functional_description:"Serine/threonine-protein kinase bud32 (EC 2.7.11.1) (AHRD V1 **** C8VPJ3_EMENI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0002039 NbS00039327g0010.1 protein AED:0.10 eAED:0.11 QI:359|1|0.8|1|0.66|0.6|10|0|878; (*GB) gi|359478494|ref|XP_002276607.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253523 [Vitis vinifera];; (*TAIR) AT3G51620.2 (e_value=2e-157) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc06g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44564087-44570873 transcript_region:SL2.40ch06:44564087..44570873- functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00039327g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.71|0.62|1|0.42|0.5|8|272|347; (*GB) gi|255554489|ref|XP_002518283.1| (e_value=0.0) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=2e-175) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT1G06890.2 (e_value=2e-176) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:2111728-2114038 REVERSE LENGTH=357;; (*ITAG) Solyc06g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44579622-44585131 transcript_region:SL2.40ch06:44579622..44585131- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00039327g0006.1 protein AED:0.29 eAED:0.30 QI:0|1|0.33|1|0.5|0.33|3|0|119; (*GB) gi|297745771|emb|CBI15827.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LYK9|RS263_ARATH (e_value=1e-34) 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1;; (*TAIR) AT3G56340.1 (e_value=8e-36) | Symbols: | Ribosomal protein S26e family protein | chr3:20892309-20893343 REVERSE LENGTH=130;; (*ITAG) Solyc06g007470.2.1 (e_value=3e-42) genomic_reference:SL2.40ch06 gene_region:1479427-1482088 transcript_region:SL2.40ch06:1479427..1482088- go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00007449g0003.1 protein AED:0.20 eAED:0.20 QI:502|0.8|0.66|1|0.2|0.16|6|233|172; (*GB) gi|225436100|ref|XP_002277937.1| (e_value=1e-85) PREDICTED: putative axial regulator YABBY 2 [Vitis vinifera];; (*SWP) sp|Q9XFB0|YAB2_ARATH (e_value=6e-67) Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1;; (*TAIR) AT1G08465.1 (e_value=5e-68) | Symbols: YAB2 | Plant-specific transcription factor YABBY family protein | chr1:2676033-2679382 FORWARD LENGTH=184;; (*ITAG) Solyc06g073920.2.1 (e_value=2e-92) genomic_reference:SL2.40ch06 gene_region:42038601-42044688 transcript_region:SL2.40ch06:42038601..42044688+ go_terms:GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0003700 NbS00003731g0018.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.33|3|281|593; (*GB) gi|225437850|ref|XP_002263867.1| (e_value=0.0) PREDICTED: nephrocystin-3 [Vitis vinifera];; (*SWP) sp|A0JM23|NPHP3_XENTR (e_value=5e-11) Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2;; (*TAIR) AT2G31240.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13317570-13319518 REVERSE LENGTH=617;; (*ITAG) Solyc09g066290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60333632-60340488 transcript_region:SL2.40ch09:60333632..60340488+ go_terms:GO:0005488 functional_description:"Kinesin light chain-like (AHRD V1 **-- Q6K715_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003731g0019.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0|1|0.75|0.8|5|0|427; (*GB) gi|297744116|emb|CBI37086.3| (e_value=4e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42450.1 (e_value=2e-124) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17672425-17674854 REVERSE LENGTH=546;; (*ITAG) Solyc06g083920.2.1 (e_value=5e-163) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00003731g0017.1 protein AED:0.07 eAED:0.07 QI:776|1|1|1|1|1|11|615|722; (*GB) gi|359480260|ref|XP_003632423.1| (e_value=0.0) PREDICTED: uncharacterized basic helix-loop-helix protein At1g06150-like [Vitis vinifera];; (*SWP) sp|P0C7P8|LHWL1_ARATH (e_value=1e-127) Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1;; (*TAIR) AT1G06150.2 (e_value=1e-128) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1869228-1873194 REVERSE LENGTH=734;; (*ITAG) Solyc09g066280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60313642-60321060 transcript_region:SL2.40ch09:60313642..60321060- go_terms:GO:0045449 functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *--- Y1615_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00035864g0005.1 protein AED:0.04 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|530; (*GB) gi|359481981|ref|XP_002277307.2| (e_value=1e-76) PREDICTED: trihelix transcription factor GT-2-like [Vitis vinifera];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=2e-29) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT5G03680.1 (e_value=2e-53) | Symbols: PTL | Duplicated homeodomain-like superfamily protein | chr5:957858-960760 FORWARD LENGTH=591;; (*ITAG) Solyc09g009250.2.1 (e_value=4e-80) genomic_reference:SL2.40ch09 gene_region:2634459-2637947 transcript_region:SL2.40ch09:2634459..2637947+ go_terms:GO:0003700 functional_description:"Trihelix transcription factor (AHRD V1 **-* Q6Q6T0_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00057472g0001.1 protein AED:0.24 eAED:0.82 QI:0|0|0|1|1|1|2|0|225; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-17) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*SWP) sp|Q93YQ7|GUN24_ARATH (e_value=2e-15) Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1;; (*TAIR) AT4G39010.1 (e_value=2e-16) | Symbols: AtGH9B18, GH9B18 | glycosyl hydrolase 9B18 | chr4:18176162-18179102 REVERSE LENGTH=497;; (*ITAG) Solyc01g110340.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:88831044-88837188 transcript_region:SL2.40ch01:88831044..88837188+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00007109g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|314 NbS00026116g0014.1 protein AED:0.03 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|175; (*GB) gi|147856414|emb|CAN82501.1| (e_value=9e-97) hypothetical protein VITISV_004915 [Vitis vinifera];; (*SWP) sp|Q9FGM1|PYL8_ARATH (e_value=2e-90) Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1;; (*TAIR) AT5G53160.2 (e_value=1e-91) | Symbols: RCAR3, PYL8 | regulatory components of ABA receptor 3 | chr5:21561026-21561953 FORWARD LENGTH=188;; (*ITAG) Solyc01g095700.2.1 (e_value=2e-112) genomic_reference:SL2.40ch01 gene_region:78645220-78647649 transcript_region:SL2.40ch01:78645220..78647649- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00026116g0017.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|8|715|441; (*GB) gi|224130512|ref|XP_002320855.1| (e_value=4e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M158|STR4_ARATH (e_value=2e-124) Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2;; (*TAIR) AT4G01050.1 (e_value=2e-125) | Symbols: TROL | thylakoid rhodanese-like | chr4:455874-458175 FORWARD LENGTH=466;; (*ITAG) Solyc01g095670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78628729-78632811 transcript_region:SL2.40ch01:78628729..78632811- go_terms:GO:0005515 functional_description:"Rhodanese-related sulfurtransferase (AHRD V1 *--- A0NUG1_9RHOB); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0005515 NbS00026116g0006.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|815; (*GB) gi|225454494|ref|XP_002276948.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SV26|PP297_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2;; (*TAIR) AT4G01030.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:448336-450642 REVERSE LENGTH=768;; (*ITAG) Solyc01g095690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78640121-78643091 transcript_region:SL2.40ch01:78640121..78643091+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00026116g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|358347383|ref|XP_003637737.1| (e_value=1e-66) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q9SV26|PP297_ARATH (e_value=3e-63) Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2;; (*TAIR) AT4G01030.1 (e_value=2e-64) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr4:448336-450642 REVERSE LENGTH=768;; (*ITAG) Solyc01g095690.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:78640121-78643091 transcript_region:SL2.40ch01:78640121..78643091+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00003020g0004.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|76573371|gb|ABA46790.1| (e_value=1e-52) 60S ribosomal protein L13a-like protein [Solanum tuberosum];; (*SWP) sp|Q9SFU1|R13A1_ARATH (e_value=2e-46) 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1;; (*TAIR) AT3G07110.1 (e_value=2e-47) | Symbols: | Ribosomal protein L13 family protein | chr3:2252092-2253332 FORWARD LENGTH=206;; (*ITAG) Solyc05g053670.2.1 (e_value=6e-55) genomic_reference:SL2.40ch05 gene_region:62873908-62876249 transcript_region:SL2.40ch05:62873908..62876249+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00003020g0003.1 protein AED:0.21 eAED:0.21 QI:195|0.6|0.5|0.83|0.6|0.5|6|0|611; (*GB) gi|114053439|gb|ABI49503.1| (e_value=0.0) Glycosyl hydrolases family 17 protein [Solanum demissum];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=6e-96) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT3G15800.1 (e_value=5e-163) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:5345051-5346988 FORWARD LENGTH=399;; (*ITAG) Solyc11g071520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52050205-52052249 transcript_region:SL2.40ch11:52050205..52052249+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00003020g0015.1 protein AED:0.31 eAED:0.31 QI:309|0.33|0.5|0.75|0.33|0.5|4|129|498; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=5e-125) Putative I-box binding factor, identical [Solanum demissum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-20) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G05790.1 (e_value=1e-47) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1740724-1741671 REVERSE LENGTH=277;; (*ITAG) Solyc11g071500.1.1 (e_value=1e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00003020g0002.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|1|1|3|0|528; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=2e-101) Putative I-box binding factor, identical [Solanum demissum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=7e-13) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G05790.1 (e_value=3e-39) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1740724-1741671 REVERSE LENGTH=277;; (*ITAG) Solyc11g071500.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00003020g0012.1 protein AED:0.57 eAED:0.73 QI:0|0|0|0.33|1|1|3|0|139 NbS00003020g0021.1 protein AED:0.27 eAED:0.32 QI:0|0|0|1|0|0|4|0|186; (*GB) gi|15209176|gb|AAK91894.1|AC091627_7 (e_value=2e-31) Putative I-box binding factor, identical [Solanum demissum];; (*ITAG) Solyc11g071500.1.1 (e_value=5e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00027052g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|0|0|2|0|104; (*GB) gi|255553907|ref|XP_002517994.1| (e_value=2e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g054700.2.1 (e_value=5e-39) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00048883g0005.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|467; (*GB) gi|255566241|ref|XP_002524108.1| (e_value=2e-137) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G06560.1 (e_value=6e-105) | Symbols: | Protein of unknown function, DUF593 | chr5:2003678-2005543 REVERSE LENGTH=518;; (*ITAG) Solyc10g081620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61992772-61996010 transcript_region:SL2.40ch10:61992772..61996010+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00048883g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|213; (*GB) gi|296089323|emb|CBI39095.3| (e_value=5e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG13|CXE15_ARATH (e_value=7e-63) Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1;; (*TAIR) AT5G06570.2 (e_value=5e-64) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329;; (*ITAG) Solyc11g045460.1.1 (e_value=3e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:37971022-37971765 transcript_region:SL2.40ch11:37971022..37971765- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPW1_9ROSA); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00036727g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|320; (*GB) gi|224135949|ref|XP_002322201.1| (e_value=5e-156) predicted protein [Populus trichocarpa];; (*TAIR) AT4G12690.2 (e_value=1e-80) | Symbols: | Plant protein of unknown function (DUF868) | chr4:7480896-7481753 FORWARD LENGTH=285;; (*ITAG) Solyc03g112130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56683176-56684132 transcript_region:SL2.40ch03:56683176..56684132- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00036727g0002.1 protein AED:0.03 eAED:0.04 QI:0|0.5|0.22|1|1|1|9|0|651; (*GB) gi|224133690|ref|XP_002321637.1| (e_value=2e-176) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g112110.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:56677468-56678764 transcript_region:SL2.40ch03:56677468..56678764+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042212g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.6|1|0.71|0.6|15|0|1611; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=2e-15) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1;; (*TAIR) AT2G25320.1 (e_value=0.0) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00050141g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|0|2|0|159; (*GB) gi|871485|emb|CAA58733.1| (e_value=2e-109) PAR-1a [Nicotiana tabacum];; (*TAIR) AT5G52390.1 (e_value=7e-68) | Symbols: | PAR1 protein | chr5:21264281-21265173 REVERSE LENGTH=195;; (*ITAG) Solyc03g025680.2.1 (e_value=1e-92) genomic_reference:SL2.40ch03 gene_region:7495543-7496578 transcript_region:SL2.40ch03:7495543..7496578+ functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00038906g0009.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|1|1|2|0|325; (*GB) gi|350539876|ref|NP_001233792.1| (e_value=1e-106) TCP transcription factor 5 [Solanum lycopersicum];; (*SWP) sp|Q9S7W5|TCP13_ARATH (e_value=1e-43) Transcription factor TCP13 OS=Arabidopsis thaliana GN=TCP13 PE=1 SV=1;; (*TAIR) AT3G02150.2 (e_value=9e-45) | Symbols: PTF1, TFPD | plastid transcription factor 1 | chr3:391522-392589 FORWARD LENGTH=355;; (*ITAG) Solyc02g089020.1.1 (e_value=3e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45506185-45507039 transcript_region:SL2.40ch02:45506185..45507039+ functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK40_9ASPA); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00038906g0010.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.2|1|0.5|0.4|5|0|968; (*GB) gi|225451725|ref|XP_002276947.1| (e_value=5e-160) PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera];; (*TAIR) AT1G74160.1 (e_value=2e-77) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). | chr1:27887164-27891151 FORWARD LENGTH=1025;; (*ITAG) Solyc02g089050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00002133g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.81|0.82|0.94|0.75|0.70|17|324|825; (*GB) gi|224094755|ref|XP_002310223.1| (e_value=0.0) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q9XFH4|DDM1_ARATH (e_value=0.0) ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1;; (*TAIR) AT5G66750.1 (e_value=0.0) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764;; (*ITAG) Solyc02g085390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42888431-42896373 transcript_region:SL2.40ch02:42888431..42896373- go_terms:GO:0004003 functional_description:"Uncharacterized ATP-dependent helicase C25A8.01c (AHRD V1 **-* YFC1_SCHPO); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00002133g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.90|0.75|1|1|1|12|219|517; (*GB) gi|297735172|emb|CBI17534.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=5e-137) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc02g085400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42897475-42900557 transcript_region:SL2.40ch02:42897475..42900557- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00033655g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0.33|1|0.5|0.66|3|102|477; (*GB) gi|224140385|ref|XP_002323563.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=0.0) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc09g014350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5900240-5903588 transcript_region:SL2.40ch09:5900240..5903588- go_terms:GO:0003841 functional_description:"Glycerol-3-phosphate acyltransferase 6 (AHRD V1 **** D7LKT2_ARALY); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00039883g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|90; (*GB) gi|297597772|ref|NP_001044498.2| (e_value=2e-19) Os01g0793500 [Oryza sativa Japonica Group];; (*TAIR) AT4G27020.1 (e_value=5e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064420.2.1 (e_value=2e-24) genomic_reference:SL2.40ch07 gene_region:63810958-63815914 transcript_region:SL2.40ch07:63810958..63815914+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00039883g0002.1 protein AED:0.32 eAED:0.44 QI:0|1|0.5|1|1|1|2|0|199; (*GB) gi|255563939|ref|XP_002522969.1| (e_value=1e-92) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q9AXM6|T10H_TAXCU (e_value=1e-39) Taxane 10-beta-hydroxylase OS=Taxus cuspidata GN=CYP725A1 PE=1 SV=1;; (*TAIR) AT5G36110.1 (e_value=9e-30) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g064450.2.1 (e_value=5e-106) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006883g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|225443652|ref|XP_002280202.1| (e_value=9e-24) PREDICTED: uncharacterized protein LOC100267454 [Vitis vinifera];; (*TAIR) AT4G15800.1 (e_value=8e-19) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc07g063030.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:62854368-62854754 transcript_region:SL2.40ch07:62854368..62854754+ go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00033052g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.81|0.70|1|0.81|0.82|17|0|1278; (*GB) gi|359490266|ref|XP_002265664.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252544 [Vitis vinifera];; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=2e-102) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT5G62310.1 (e_value=0.0) | Symbols: IRE | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr5:25023405-25028414 FORWARD LENGTH=1168;; (*ITAG) Solyc03g083590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47091306-47102124 transcript_region:SL2.40ch03:47091306..47102124+ go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00033052g0010.1 protein AED:0.29 eAED:0.32 QI:309|0.8|0.66|1|1|1|6|0|209; (*GB) gi|225466049|ref|XP_002263160.1| (e_value=1e-81) PREDICTED: adenylate kinase [Vitis vinifera];; (*SWP) sp|O24464|KAD_PRUAR (e_value=2e-78) Adenylate kinase OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT4G25280.1 (e_value=1e-78) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12939068-12940723 REVERSE LENGTH=249;; (*ITAG) Solyc03g083610.2.1 (e_value=9e-127) genomic_reference:SL2.40ch03 gene_region:47110164-47113688 transcript_region:SL2.40ch03:47110164..47113688+ go_terms:GO:0009041 functional_description:"Adenylate kinase (AHRD V1 **** B6TE58_MAIZE); contains Interpro domain(s) IPR006266 UMP-CMP kinase "; GO:0009041 NbS00003953g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|350539643|ref|NP_001234488.1| (e_value=3e-104) peptidyl-prolyl cis-trans isomerase [Solanum lycopersicum];; (*SWP) sp|P21568|CYPH_SOLLC (e_value=8e-106) Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1;; (*TAIR) AT2G16600.1 (e_value=6e-94) | Symbols: ROC3 | rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173;; (*ITAG) Solyc10g054910.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51540879-51541397 transcript_region:SL2.40ch10:51540879..51541397+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00004854g0005.1 protein AED:0.07 eAED:0.07 QI:106|0.76|0.57|1|0.69|0.64|14|645|829; (*GB) gi|371927103|gb|AEX58649.1| (e_value=0.0) prolyl oligopeptidase [Coffea arabica];; (*SWP) sp|Q9QUR6|PPCE_MOUSE (e_value=0.0) Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1;; (*TAIR) AT1G76140.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr1:28571187-28574852 FORWARD LENGTH=795;; (*ITAG) Solyc08g022070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:11395315-11403888 transcript_region:SL2.40ch08:11395315..11403888- go_terms:GO:0004252,GO:0070012 functional_description:"Prolyl endopeptidase (AHRD V1 **** B6U134_MAIZE); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0004252,GO:0070012 NbS00010687g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0.5|2|1786|196; (*GB) gi|255568337|ref|XP_002525143.1| (e_value=5e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42370.1 (e_value=5e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr2:17643334-17645533 FORWARD LENGTH=715;; (*ITAG) Solyc07g053440.2.1 (e_value=4e-70) genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)"; NbS00010687g0001.1 protein AED:0.42 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|302143382|emb|CBI21943.3| (e_value=9e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42370.1 (e_value=6e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58110.2); Has 205 Blast hits to 191 proteins in 60 species: Archae - 3; Bacteria - 23; Metazoa - 73; Fungi - 8; Plants - 34; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr2:17643334-17645533 FORWARD LENGTH=715;; (*ITAG) Solyc07g053440.2.1 (e_value=2e-106) genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)"; NbS00010687g0002.1 protein AED:0.42 eAED:0.53 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|358347217|ref|XP_003637656.1| (e_value=2e-15) hypothetical protein MTR_096s0023 [Medicago truncatula];; (*ITAG) Solyc07g053440.2.1 (e_value=5e-90) genomic_reference:SL2.40ch07 gene_region:59211525-59214134 transcript_region:SL2.40ch07:59211525..59214134+ functional_description:"Os06g0538200 protein (Fragment) (AHRD V1 *-*- Q0DBR2_ORYSJ)"; NbS00000151g0005.1 protein AED:0.14 eAED:0.14 QI:143|0.90|0.91|1|0.54|0.5|12|595|1169; (*GB) gi|359491354|ref|XP_002266572.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267228 [Vitis vinifera];; (*SWP) sp|O14099|YERG_SCHPO (e_value=5e-38) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT1G74770.1 (e_value=0.0) | Symbols: | zinc ion binding | chr1:28089695-28094834 REVERSE LENGTH=1259;; (*ITAG) Solyc06g071130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40109479-40116968 transcript_region:SL2.40ch06:40109479..40116968- go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00011082g0009.1 protein AED:0.09 eAED:0.09 QI:225|1|1|1|0.92|0.86|15|415|529; (*GB) gi|1840114|gb|AAC49942.1| (e_value=0.0) ADP-glucose pyrophosphorylase large subunit [Solanum lycopersicum];; (*SWP) sp|P55242|GLGL2_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1;; (*TAIR) AT1G27680.1 (e_value=0.0) | Symbols: APL2 | ADPGLC-PPase large subunit | chr1:9631630-9634450 FORWARD LENGTH=518;; (*ITAG) Solyc07g019440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11193230-11198353 transcript_region:SL2.40ch07:11193230..11198353- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** P93223_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00011082g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.66|3|247|221; (*GB) gi|255538690|ref|XP_002510410.1| (e_value=3e-92) rer1 protein, putative [Ricinus communis];; (*SWP) sp|O48671|RER1B_ARATH (e_value=3e-80) Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2;; (*TAIR) AT2G21600.1 (e_value=2e-81) | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195;; (*ITAG) Solyc01g109770.2.1 (e_value=5e-85) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00011082g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|324; (*GB) gi|224066211|ref|XP_002302027.1| (e_value=4e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT1G75260.1 (e_value=2e-35) | Symbols: | oxidoreductases, acting on NADH or NADPH | chr1:28247854-28249395 FORWARD LENGTH=513;; (*ITAG) Solyc04g080520.1.1 (e_value=7e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62260297-62262138 transcript_region:SL2.40ch04:62260297..62262138+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011082g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|313 NbS00017462g0007.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|64 NbS00017462g0005.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.5|1|1|2|0|111 NbS00017462g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|296088999|emb|CBI38702.3| (e_value=8e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46760.1 (e_value=3e-52) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=6e-52) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00017462g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|150; (*GB) gi|225453604|ref|XP_002267268.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100260872 [Vitis vinifera];; (*TAIR) AT2G46760.1 (e_value=7e-52) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=2e-55) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00035265g0007.1 protein AED:0.02 eAED:0.02 QI:76|1|1|1|1|1|2|103|352; (*GB) gi|310813975|gb|ADP30799.1| (e_value=0.0) nicotine uptake permease 2 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=2e-107) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=2e-108) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=9e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00035265g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|63 NbS00004209g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|296086196|emb|CBI31637.3| (e_value=2e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-38) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT3G55560.1 (e_value=4e-67) | Symbols: AGF2, AHL15 | AT-hook protein of GA feedback 2 | chr3:20604904-20605836 REVERSE LENGTH=310;; (*ITAG) Solyc05g053000.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62313115-62314056 transcript_region:SL2.40ch05:62313115..62314056+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00004209g0011.1 protein AED:0.66 eAED:0.67 QI:0|0|0|0.33|0|0.33|3|0|127; (*ITAG) Solyc12g042680.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00004209g0010.1 protein AED:0.44 eAED:0.47 QI:0|0|0|1|0|0|2|0|113 NbS00004209g0012.1 protein AED:0.58 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|102; (*ITAG) Solyc09g008110.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00057771g0001.1 protein AED:0.05 eAED:0.05 QI:363|1|1|1|0.57|0.37|8|485|248; (*GB) gi|224066537|ref|XP_002302126.1| (e_value=1e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SS37|RTNLH_ARATH (e_value=3e-108) Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1;; (*TAIR) AT3G10260.2 (e_value=2e-109) | Symbols: | Reticulon family protein | chr3:3171413-3172508 REVERSE LENGTH=247;; (*ITAG) Solyc12g006290.1.1 (e_value=3e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:801938-804732 transcript_region:SL2.40ch12:801938..804732- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7L8W9_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00015931g0006.1 protein AED:0.05 eAED:0.05 QI:2|0.66|0.25|0.75|1|1|4|259|20 NbS00015931g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|666; (*GB) gi|255588220|ref|XP_002534539.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|O80939|LRK41_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase IV.1 OS=Arabidopsis thaliana GN=LECRK41 PE=1 SV=1;; (*TAIR) AT2G37710.1 (e_value=0.0) | Symbols: RLK | receptor lectin kinase | chr2:15814934-15816961 REVERSE LENGTH=675;; (*ITAG) Solyc09g012000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5270541-5272550 transcript_region:SL2.40ch09:5270541..5272550- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00015931g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|75 NbS00028795g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.33|0|1|0.33|0|4|0|376; (*GB) gi|225437842|ref|XP_002263628.1| (e_value=4e-116) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera];; (*SWP) sp|O04847|DV4H_CATRO (e_value=3e-90) Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2;; (*TAIR) AT1G06620.1 (e_value=1e-90) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010040.1.1 (e_value=1e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3454295-3455561 transcript_region:SL2.40ch09:3454295..3455561+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-- Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00049678g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|225432588|ref|XP_002277866.1| (e_value=3e-105) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9ZQ91|CXE7_ARATH (e_value=1e-75) Probable carboxylesterase 7 OS=Arabidopsis thaliana GN=CXE7 PE=2 SV=1;; (*TAIR) AT2G03550.1 (e_value=1e-76) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1077080-1078018 FORWARD LENGTH=312;; (*ITAG) Solyc05g051660.1.1 (e_value=1e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61195972-61196940 transcript_region:SL2.40ch05:61195972..61196940+ go_terms:GO:0004091 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6T2M3_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00049678g0010.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|3|0|114; (*ITAG) Solyc01g094420.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00049678g0008.1 protein AED:0.18 eAED:0.33 QI:53|0|0|1|0|0|2|0|88 NbS00049678g0011.1 protein AED:0.29 eAED:0.50 QI:0|0|0|1|0|0|2|0|79 NbS00052957g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|674; (*GB) gi|225461957|ref|XP_002266660.1| (e_value=0.0) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 [Vitis vinifera];; (*SWP) sp|Q9LVQ4|Y5586_ARATH (e_value=4e-146) WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1;; (*TAIR) AT5G55860.1 (e_value=3e-147) | Symbols: | Plant protein of unknown function (DUF827) | chr5:22610146-22612166 FORWARD LENGTH=649;; (*ITAG) Solyc07g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64579556-64582510 transcript_region:SL2.40ch07:64579556..64582510+ functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q9LVQ4_ARATH); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00052957g0008.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc07g047790.2.1 (e_value=2e-15) genomic_reference:SL2.40ch07 gene_region:56327803-56334029 transcript_region:SL2.40ch07:56327803..56334029- go_terms:GO:0005524,GO:0006950 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_IDILO); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00052957g0003.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|100; (*ITAG) Solyc07g065670.1.1 (e_value=8e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64574694-64574987 transcript_region:SL2.40ch07:64574694..64574987- functional_description:"Unknown Protein (AHRD V1)"; NbS00006111g0002.1 protein AED:0.09 eAED:0.09 QI:182|1|0.75|1|0.66|0.75|4|484|98; (*GB) gi|255558940|ref|XP_002520493.1| (e_value=2e-62) Transcription elongation factor B polypeptide, putative [Ricinus communis];; (*SWP) sp|P83941|ELOC_RAT (e_value=2e-25) Transcription elongation factor B polypeptide 1 OS=Rattus norvegicus GN=Tceb1 PE=1 SV=1;; (*TAIR) AT5G59140.1 (e_value=3e-56) | Symbols: | BTB/POZ domain-containing protein | chr5:23874696-23875631 REVERSE LENGTH=96;; (*ITAG) Solyc06g076460.2.1 (e_value=7e-47) genomic_reference:SL2.40ch06 gene_region:43894492-43897706 transcript_region:SL2.40ch06:43894492..43897706+ go_terms:GO:0005515 functional_description:"Transcription elongation factor B polypeptide 1 (AHRD V1 ***- Q1HQ04_BOMMO); contains Interpro domain(s) IPR011333 BTB/POZ fold "; GO:0005515 NbS00003671g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|1|1|5|0|272; (*GB) gi|255581713|ref|XP_002531659.1| (e_value=5e-129) [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis];; (*TAIR) AT2G18850.1 (e_value=2e-110) | Symbols: | SET domain-containing protein | chr2:8160788-8163479 FORWARD LENGTH=543;; (*ITAG) Solyc02g014520.2.1 (e_value=5e-169) genomic_reference:SL2.40ch02 gene_region:8113776-8116245 transcript_region:SL2.40ch02:8113776..8116245+ functional_description:"SET domain containing protein (AHRD V1 **-- B6U4M9_MAIZE)"; NbS00003671g0008.1 protein AED:0.87 eAED:0.93 QI:0|0|0|0.33|1|1|6|0|251; (*GB) gi|225446052|ref|XP_002268920.1| (e_value=5e-66) PREDICTED: uncharacterized protein LOC100256524 [Vitis vinifera];; (*TAIR) AT2G18850.2 (e_value=2e-46) | Symbols: | SET domain-containing protein | chr2:8160788-8163479 FORWARD LENGTH=536;; (*ITAG) Solyc02g014500.1.1 (e_value=6e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:8085546-8090651 transcript_region:SL2.40ch02:8085546..8090651+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021760g0010.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|81; (*GB) gi|350539449|ref|NP_001234138.1| (e_value=3e-50) profilin [Solanum lycopersicum];; (*SWP) sp|Q93YI9|PROF_CAPAN (e_value=1e-51) Profilin OS=Capsicum annuum PE=1 SV=1;; (*TAIR) AT4G29350.1 (e_value=5e-44) | Symbols: PFN2, PRO2, PRF2 | profilin 2 | chr4:14450135-14451119 FORWARD LENGTH=131;; (*ITAG) Solyc11g070130.1.1 (e_value=5e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51738809-51741342 transcript_region:SL2.40ch11:51738809..51741342+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q8VWR0_SOLLC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00021760g0011.1 protein AED:0.19 eAED:0.39 QI:0|0|0|0.8|0|0.2|5|0|129; (*GB) gi|300681354|emb|CAZ96103.1| (e_value=1e-42) cell division control protein 2 homolog 2 [Saccharum hybrid cultivar R570];; (*SWP) sp|P29619|CDKA2_ORYSJ (e_value=3e-41) Cyclin-dependent kinase A-2 OS=Oryza sativa subsp. japonica GN=CDKA-2 PE=2 SV=1;; (*TAIR) AT3G48750.1 (e_value=4e-30) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc11g070140.1.1 (e_value=3e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51745189-51750436 transcript_region:SL2.40ch11:51745189..51750436+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017023g0003.1 protein AED:0.13 eAED:0.13 QI:76|0.88|1|1|0.22|0.3|10|426|505; (*GB) gi|296081345|emb|CBI17691.3| (e_value=3e-158) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67550.1 (e_value=2e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26946908-26949112 REVERSE LENGTH=509;; (*ITAG) Solyc08g014010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3508330-3513774 transcript_region:SL2.40ch08:3508330..3513774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058462g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|225465036|ref|XP_002266248.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100258180 [Vitis vinifera];; (*TAIR) AT3G12830.1 (e_value=1e-43) | Symbols: | SAUR-like auxin-responsive protein family | chr3:4079117-4079515 REVERSE LENGTH=132;; (*ITAG) Solyc07g066560.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:65176999-65177379 transcript_region:SL2.40ch07:65176999..65177379+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00011992g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|383; (*GB) gi|147811594|emb|CAN68183.1| (e_value=2e-154) hypothetical protein VITISV_028562 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=1e-96) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT4G33420.1 (e_value=5e-74) | Symbols: | Peroxidase superfamily protein | chr4:16084856-16086105 FORWARD LENGTH=325;; (*ITAG) Solyc01g101050.2.1 (e_value=3e-170) genomic_reference:SL2.40ch01 gene_region:82670553-82671695 transcript_region:SL2.40ch01:82670553..82671695+ go_terms:GO:0004601 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00054351g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.25|1|1|1|4|0|205; (*ITAG) Solyc11g064930.1.1 (e_value=7e-71) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:47325976-47334491 transcript_region:SL2.40ch11:47325976..47334491- functional_description:"Unknown Protein (AHRD V1)"; NbS00054351g0002.1 protein AED:0.10 eAED:0.10 QI:635|1|1|1|0.92|0.85|14|193|536; (*GB) gi|359479124|ref|XP_002273526.2| (e_value=0.0) PREDICTED: dihydropyrimidinase-like [Vitis vinifera];; (*SWP) sp|Q55DL0|DPYS_DICDI (e_value=2e-164) Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1;; (*TAIR) AT5G12200.1 (e_value=0.0) | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-3944727 REVERSE LENGTH=531;; (*ITAG) Solyc11g064920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47316105-47325043 transcript_region:SL2.40ch11:47316105..47325043+ go_terms:GO:0004157 functional_description:"Dihydropyrimidinase (AHRD V1 **-* D7M4H1_ARALY); contains Interpro domain(s) IPR011778 D-hydantoinase "; GO:0004157 NbS00041723g0003.1 protein AED:0.14 eAED:0.14 QI:104|0.55|0.5|0.9|1|1|10|357|378; (*GB) gi|225444983|ref|XP_002282760.1| (e_value=0.0) PREDICTED: protein arginine N-methyltransferase 1.1-like [Vitis vinifera];; (*SWP) sp|Q9SU94|ANM11_ARATH (e_value=0.0) Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1;; (*TAIR) AT4G29510.1 (e_value=0.0) | Symbols: ATPRMT11, PRMT11, ATPRMT1B, PRMT1B | arginine methyltransferase 11 | chr4:14491739-14493752 FORWARD LENGTH=390;; (*ITAG) Solyc12g008760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2116904-2120908 transcript_region:SL2.40ch12:2116904..2120908+ functional_description:"Protein arginine N-methyltransferase 1 (AHRD V1 ***- B6TIG8_MAIZE)"; NbS00041723g0008.1 protein AED:0.27 eAED:0.30 QI:0|0|0|0.6|0|0.2|5|0|312; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-64) hypothetical protein [Nicotiana tabacum]; NbS00014805g0105.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|63 NbS00020496g0002.1 protein AED:0.01 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|124; (*GB) gi|255586862|ref|XP_002534041.1| (e_value=2e-39) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g083440.2.1 (e_value=4e-62) genomic_reference:SL2.40ch02 gene_region:41425497-41426635 transcript_region:SL2.40ch02:41425497..41426635+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033441g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.63|0.5|0.91|0.90|0.83|12|0|754; (*GB) gi|255565893|ref|XP_002523935.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=5e-60) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41894196-41899465 transcript_region:SL2.40ch06:41894196..41899465+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00030366g0005.1 protein AED:0.12 eAED:0.14 QI:0|0.5|0.33|1|0|0.66|3|146|172; (*GB) gi|225447304|ref|XP_002279953.1| (e_value=2e-25) PREDICTED: uncharacterized protein LOC100253364 [Vitis vinifera];; (*TAIR) AT3G21710.2 (e_value=2e-14) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:7648380-7649533 FORWARD LENGTH=211;; (*ITAG) Solyc07g052460.2.1 (e_value=5e-60) genomic_reference:SL2.40ch07 gene_region:58273857-58275345 transcript_region:SL2.40ch07:58273857..58275345+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 ***- Q9LSZ3_ARATH)"; NbS00047007g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0|1|0|0|3|0|152; (*GB) gi|255578082|ref|XP_002529911.1| (e_value=4e-51) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=9e-41) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=7e-42) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064730.1.1 (e_value=4e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63980703-63984441 transcript_region:SL2.40ch07:63980703..63984441+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00047007g0010.1 protein AED:0.21 eAED:0.21 QI:213|0.84|0.85|1|0.76|0.85|14|157|643; (*GB) gi|297737457|emb|CBI26658.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q15042|RB3GP_HUMAN (e_value=2e-33) Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3;; (*TAIR) AT5G55060.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr5:22342079-22346400 FORWARD LENGTH=662;; (*ITAG) Solyc07g064740.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63987014-63995400 transcript_region:SL2.40ch07:63987014..63995400+ functional_description:"Rab3 GTPase-activating protein catalytic subunit (AHRD V1 ***- RB3GP_MOUSE)"; NbS00047007g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|138 NbS00006098g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|147843354|emb|CAN82657.1| (e_value=5e-17) hypothetical protein VITISV_042745 [Vitis vinifera];; (*ITAG) Solyc08g061160.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:44161453-44163846 transcript_region:SL2.40ch08:44161453..44163846- functional_description:"ORF107c (AHRD V1 ***- A4QMC4_PINKO)"; NbS00007132g0023.1 protein AED:0.02 eAED:0.02 QI:133|0.66|0.75|1|0.33|0.5|4|0|393; (*GB) gi|7435386|pir||S46530 (e_value=0.0) polygalacturonase (EC 3.2.1.15) precursor (clone pC27.X and clone pC27.Y) - common tobacco (fragment);; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=0.0) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G07820.1 (e_value=8e-127) | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391;; (*ITAG) Solyc07g044870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55248946-55251738 transcript_region:SL2.40ch07:55248946..55251738+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00007132g0020.1 protein AED:0.08 eAED:0.08 QI:0|1|0.88|1|1|1|9|0|555; (*GB) gi|548533|sp|P35494.1|PMGI_TOBAC (e_value=0.0) RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; AltName: Full=PGAM-I;; (*SWP) sp|P35494|PMGI_TOBAC (e_value=0.0) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G08590.2 (e_value=0.0) | Symbols: | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr3:2608683-2611237 REVERSE LENGTH=560;; (*ITAG) Solyc07g044840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55217173-55222925 transcript_region:SL2.40ch07:55217173..55222925+ go_terms:GO:0008830,GO:0004619 functional_description:"2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 **** B9S1V6_RICCO); contains Interpro domain(s) IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "; GO:0008830,GO:0004619 NbS00007132g0024.1 protein AED:0.15 eAED:0.15 QI:8|0.6|0.66|1|0.4|0.5|6|223|288; (*GB) gi|224066537|ref|XP_002302126.1| (e_value=4e-112) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SS37|RTNLH_ARATH (e_value=8e-96) Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1;; (*TAIR) AT3G10260.2 (e_value=6e-97) | Symbols: | Reticulon family protein | chr3:3171413-3172508 REVERSE LENGTH=247;; (*ITAG) Solyc12g006290.1.1 (e_value=9e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:801938-804732 transcript_region:SL2.40ch12:801938..804732- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7L8W9_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00007132g0016.1 protein AED:0.26 eAED:0.27 QI:9|1|0.5|1|0.33|0.5|4|0|581; (*GB) gi|224082598|ref|XP_002306758.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9H7D7|WDR26_HUMAN (e_value=5e-103) WD repeat-containing protein 26 OS=Homo sapiens GN=WDR26 PE=1 SV=3;; (*TAIR) AT5G08560.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc07g044850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55233263-55244252 transcript_region:SL2.40ch07:55233263..55244252+ go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00007132g0019.1 protein AED:0.25 eAED:0.25 QI:279|1|1|1|1|1|4|370|268; (*GB) gi|384038825|gb|AFH58003.1| (e_value=0.0) chloroplast PsbP3 precursor [Nicotiana benthamiana];; (*SWP) sp|Q7DM39|PSBP1_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2;; (*TAIR) AT1G06680.1 (e_value=9e-147) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=4e-162) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00007132g0103.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|342 NbS00007132g0110.1 protein AED:0.08 eAED:0.09 QI:376|0.71|0.25|1|0.57|0.62|8|0|906 NbS00007132g0109.1 protein AED:0.23 eAED:0.23 QI:0|0.28|0.12|0.37|0.71|0.75|8|0|287 NbS00007132g0112.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0|0|3|0|208 NbS00007132g0113.1 protein AED:0.34 eAED:0.46 QI:0|0|0|1|0|0|2|0|129 NbS00015341g0006.1 protein AED:0.02 eAED:0.04 QI:0|1|0.66|1|1|1|3|205|528; (*GB) gi|225446310|ref|XP_002270986.1| (e_value=6e-142) PREDICTED: sodium transporter HKT1 [Vitis vinifera];; (*SWP) sp|Q6H501|HKT6_ORYSJ (e_value=1e-117) Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1;; (*TAIR) AT4G10310.1 (e_value=3e-109) | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6392008-6395667 FORWARD LENGTH=506;; (*ITAG) Solyc07g014690.2.1 (e_value=1e-115) genomic_reference:SL2.40ch07 gene_region:5103988-5106992 transcript_region:SL2.40ch07:5103988..5106992+ go_terms:GO:0015081 functional_description:"Potassium transporter (AHRD V1 **** A0MNZ1_THEHA); contains Interpro domain(s) IPR003445 Cation transporter "; GO:0015081 NbS00028455g0017.1 protein AED:0.03 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|223; (*GB) gi|356575434|ref|XP_003555846.1| (e_value=6e-34) PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like isoform 2 [Glycine max];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=6e-21) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT3G19910.1 (e_value=5e-22) | Symbols: | RING/U-box superfamily protein | chr3:6926497-6929324 FORWARD LENGTH=340;; (*ITAG) Solyc02g005480.2.1 (e_value=3e-63) genomic_reference:SL2.40ch02 gene_region:3300436-3303904 transcript_region:SL2.40ch02:3300436..3303904+ functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LAT4_ARALY)"; NbS00028455g0013.1 protein AED:0.04 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|425; (*GB) gi|296085294|emb|CBI29026.3| (e_value=1e-158) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G19920.1 (e_value=2e-117) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6929840-6931771 REVERSE LENGTH=416;; (*ITAG) Solyc02g014670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:8850226-8854239 transcript_region:SL2.40ch02:8850226..8854239+ functional_description:"Genomic DNA chromosome 3 P1 clone MPN9 (AHRD V1 ***- Q9LT16_ARATH)"; NbS00028455g0001.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|138; (*GB) gi|357464173|ref|XP_003602368.1| (e_value=4e-27) 60S acidic ribosomal protein P1 [Medicago truncatula];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=1e-24) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=6e-26) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=4e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00028455g0015.1 protein AED:0.36 eAED:0.36 QI:0|1|0.85|1|1|1|7|0|340; (*GB) gi|350537933|ref|NP_001234574.1| (e_value=0.0) succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [Solanum lycopersicum];; (*SWP) sp|Q6DQL1|SUCA2_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT5G23250.1 (e_value=0.0) | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341;; (*ITAG) Solyc02g005350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2285566-2310956 transcript_region:SL2.40ch02:2285566..2310956- go_terms:GO:0005507 functional_description:"Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit "; GO:0005507 NbS00038562g0004.1 protein AED:0.09 eAED:0.09 QI:398|1|1|1|1|1|9|448|526; (*GB) gi|225441006|ref|XP_002283672.1| (e_value=0.0) PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Vitis vinifera];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00001790g0003.1 protein AED:0.01 eAED:0.01 QI:165|1|0.83|1|1|1|6|272|523; (*GB) gi|225463026|ref|XP_002266433.1| (e_value=3e-116) PREDICTED: uncharacterized protein LOC100263653 [Vitis vinifera];; (*SWP) sp|Q91XF4|RN167_MOUSE (e_value=8e-14) E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1;; (*TAIR) AT5G45290.1 (e_value=2e-36) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=545;; (*ITAG) Solyc07g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1939982-1946761 transcript_region:SL2.40ch07:1939982..1946761- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00044705g0106.1 protein AED:0.18 eAED:0.18 QI:0|0.90|0.91|1|0.45|0.5|12|0|370 NbS00007787g0105.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|93 NbS00019530g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|1026; (*GB) gi|255566593|ref|XP_002524281.1| (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-64) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=5e-82) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc05g055190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64086153-64089239 transcript_region:SL2.40ch05:64086153..64089239+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00019530g0021.1 protein AED:0.05 eAED:0.10 QI:38|0|0.16|1|0.2|0|6|0|659; (*GB) gi|83283955|gb|ABC01885.1| (e_value=0.0) eukaryotic peptide chain release factor subunit 1-3-like protein [Solanum tuberosum];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc05g055210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64100673-64101986 transcript_region:SL2.40ch05:64100673..64101986+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-3-like (AHRD V1 **** Q2VCK6_SOLTU); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00019530g0020.1 protein AED:0.00 eAED:0.00 QI:159|1|1|1|0.5|0.66|3|313|100; (*GB) gi|255562272|ref|XP_002522144.1| (e_value=2e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G49975.1 (e_value=2e-29) | Symbols: | INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18504845-18505431 FORWARD LENGTH=129; NbS00019530g0006.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|350534914|ref|NP_001234678.1| (e_value=7e-91) 40S ribosomal protein S17 [Solanum lycopersicum];; (*SWP) sp|P49215|RS17_SOLLC (e_value=2e-92) 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3;; (*TAIR) AT5G04800.4 (e_value=4e-80) | Symbols: | Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141;; (*ITAG) Solyc05g055230.1.1 (e_value=1e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:64111952-64112386 transcript_region:SL2.40ch05:64111952..64112386- go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S17-like protein (AHRD V1 ***- Q3HRX4_SOLTU); contains Interpro domain(s) IPR018273 Ribosomal protein S17e, conserved site "; GO:0003735,GO:0003723 NbS00019530g0019.1 protein AED:0.30 eAED:0.30 QI:0|0.83|0.71|0.85|1|1|7|197|221; (*GB) gi|224097586|ref|XP_002310998.1| (e_value=1e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4QQV8|CHMP5_RAT (e_value=2e-48) Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1;; (*TAIR) AT5G04850.1 (e_value=1e-124) | Symbols: VPS60.2 | SNF7 family protein | chr5:1408246-1409806 REVERSE LENGTH=235;; (*ITAG) Solyc05g055170.2.1 (e_value=1e-142) genomic_reference:SL2.40ch05 gene_region:64073846-64078030 transcript_region:SL2.40ch05:64073846..64078030- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 5 (AHRD V1 **-- B6TYU1_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00019530g0009.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|225464408|ref|XP_002269135.1| (e_value=4e-48) PREDICTED: uncharacterized protein LOC100244711 [Vitis vinifera];; (*TAIR) AT5G04820.1 (e_value=1e-28) | Symbols: ATOFP13, OFP13 | ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260;; (*ITAG) Solyc05g055220.1.1 (e_value=4e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64106469-64107158 transcript_region:SL2.40ch05:64106469..64107158- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 **-- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00019530g0023.1 protein AED:0.14 eAED:0.53 QI:0|0|0|1|0|0|3|0|127; (*GB) gi|6688529|emb|CAB65169.1| (e_value=1e-22) I-box binding factor [Solanum lycopersicum];; (*TAIR) AT5G04760.1 (e_value=2e-19) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1373752-1374529 REVERSE LENGTH=215;; (*ITAG) Solyc05g055240.2.1 (e_value=2e-25) genomic_reference:SL2.40ch05 gene_region:64115249-64118720 transcript_region:SL2.40ch05:64115249..64118720+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** D7MR44_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00019530g0018.1 protein AED:0.31 eAED:0.54 QI:0|0|0|1|0|0|2|132|57; (*GB) gi|13449402|ref|NP_085585.1| (e_value=3e-16) hypothetical protein ArthMp026 [Arabidopsis thaliana];; (*SWP) sp|P92563|M1330_ARATH (e_value=9e-18) Uncharacterized mitochondrial protein AtMg01330 OS=Arabidopsis thaliana GN=AtMg01330 PE=4 SV=1;; (*ITAG) ATMG01330.1 (e_value=7e-19) | Symbols: ORF107H | hypothetical protein | chrM:329082-329465 REVERSE LENGTH=127;; (*ITAG) Solyc00g126010.1.1 (e_value=6e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:16639340-16639513 transcript_region:SL2.40ch00:16639340..16639513+ functional_description:"Uncharacterized mitochondrial protein AtMg01330 (AHRD V1 ***- M1330_ARATH)"; NbS00043827g0011.1 protein AED:0.02 eAED:0.02 QI:668|1|1|1|1|1|2|126|312; (*GB) gi|225444954|ref|XP_002279729.1| (e_value=7e-99) PREDICTED: uncharacterized protein LOC100262802 [Vitis vinifera];; (*TAIR) AT4G29560.1 (e_value=1e-86) | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:14504421-14505999 REVERSE LENGTH=493;; (*ITAG) Solyc07g026640.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:30035959-30039094 transcript_region:SL2.40ch07:30035959..30039094+ functional_description:"Fanconi anemia E (AHRD V1 *-*- Q1X871_DANRE)"; NbS00043827g0012.1 protein AED:0.03 eAED:0.03 QI:136|1|1|1|1|1|3|162|301; (*GB) gi|350537429|ref|NP_001234037.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase [Solanum lycopersicum];; (*SWP) sp|Q9ZUN4|ACCO1_ARATH (e_value=3e-152) 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana GN=ACO1 PE=2 SV=1;; (*TAIR) AT2G19590.1 (e_value=3e-153) | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8476239-8477354 REVERSE LENGTH=310;; (*ITAG) Solyc07g026650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:30139957-30141385 transcript_region:SL2.40ch07:30139957..30141385- go_terms:GO:0045431,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **** Q6A1K7_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431,GO:0009815 NbS00016900g0003.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|201; (*ITAG) Solyc04g011660.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4125296-4126710 transcript_region:SL2.40ch04:4125296..4126710+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00015640g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|0|2|0|123; (*GB) gi|255543967|ref|XP_002513046.1| (e_value=2e-51) NADPH:quinone oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q9LK88|NQR_ARATH (e_value=3e-44) NADPH:quinone oxidoreductase OS=Arabidopsis thaliana GN=NQR PE=1 SV=1;; (*TAIR) AT3G27890.1 (e_value=2e-45) | Symbols: NQR | NADPH:quinone oxidoreductase | chr3:10350807-10351938 REVERSE LENGTH=196;; (*ITAG) Solyc01g096420.2.1 (e_value=2e-57) genomic_reference:SL2.40ch01 gene_region:79283757-79285091 transcript_region:SL2.40ch01:79283757..79285091+ functional_description:"Predicted NADPH-dependent FMN reductase (AHRD V1 ***- Q0W0S0_UNCMA); contains Interpro domain(s) IPR005025 NADPH-dependent FMN reductase "; NbS00015640g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|72 NbS00027243g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.8|0.5|1|0.8|0.5|6|0|284; (*GB) gi|350538149|ref|NP_001234585.1| (e_value=0.0) chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum];; (*SWP) sp|O20252|S17P_SPIOL (e_value=5e-179) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=1e-173) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00027243g0009.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|183; (*GB) gi|237664617|gb|ACR09747.1| (e_value=9e-60) DIV2B protein [Heptacodium miconioides];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=4e-14) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58900.1 (e_value=5e-49) | Symbols: | Homeodomain-like transcriptional regulator | chr5:23783275-23784667 REVERSE LENGTH=288;; (*ITAG) Solyc05g052610.2.1 (e_value=8e-70) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00032837g0003.1 protein AED:0.07 eAED:0.07 QI:20|1|1|1|0.75|0.8|5|170|411; (*GB) gi|350537699|ref|NP_001234561.1| (e_value=0.0) auxin-regulated dual specificity cytosolic kinase [Solanum lycopersicum];; (*SWP) sp|Q9CAH1|Y1725_ARATH (e_value=2e-153) Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1;; (*TAIR) AT2G05940.1 (e_value=1e-178) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc12g049360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46337179-46339669 transcript_region:SL2.40ch12:46337179..46339669+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 ***- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00019654g0008.1 protein AED:0.08 eAED:0.09 QI:0|0.81|0.58|0.91|0.81|0.91|12|0|795; (*GB) gi|255555995|ref|XP_002519032.1| (e_value=0.0) double-stranded RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q5YDB6|CPL1_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1;; (*TAIR) AT4G21670.1 (e_value=0.0) | Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain phosphatase-like 1 | chr4:11511511-11516922 FORWARD LENGTH=967;; (*ITAG) Solyc02g078550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37786234-37796329 transcript_region:SL2.40ch02:37786234..37796329- go_terms:GO:0004647,GO:0019204 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 1 (AHRD V1 **** CPL1_ARATH); contains Interpro domain(s) IPR004274 NLI interacting factor "; GO:0004647,GO:0019204 NbS00010301g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.85|1|0.33|0.42|7|0|371; (*GB) gi|296089819|emb|CBI39638.3| (e_value=4e-130) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=8e-57) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=2e-127) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g100890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82545320-82548817 transcript_region:SL2.40ch01:82545320..82548817+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00010301g0115.1 protein AED:0.23 eAED:0.23 QI:153|0.8|1|1|1|1|6|282|321 NbS00010301g0116.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|286 NbS00010301g0102.1 protein AED:0.23 eAED:0.23 QI:0|0.28|0.12|0.75|1|1|8|0|372 NbS00038360g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|204; (*GB) gi|225426371|ref|XP_002269437.1| (e_value=2e-69) PREDICTED: protein LURP-one-related 4 [Vitis vinifera];; (*SWP) sp|Q9LUM1|LOR11_ARATH (e_value=2e-47) Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1;; (*TAIR) AT3G14260.1 (e_value=1e-48) | Symbols: | Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230;; (*ITAG) Solyc00g100880.2.1 (e_value=5e-110) genomic_reference:SL2.40ch00 gene_region:15777138-15778282 transcript_region:SL2.40ch00:15777138..15778282+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00047751g0011.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0|1|0.33|0.25|4|0|673; (*GB) gi|255560161|ref|XP_002521098.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FKB6|Y5880_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1;; (*TAIR) AT5G48800.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19786881-19789003 FORWARD LENGTH=614;; (*ITAG) Solyc09g061250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53983844-53986396 transcript_region:SL2.40ch09:53983844..53986396- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00047751g0004.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|224069778|ref|XP_002303037.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g061240.1.1 (e_value=1e-123) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:53982272-53983159 transcript_region:SL2.40ch09:53982272..53983159+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047751g0012.1 protein AED:0.41 eAED:0.41 QI:0|1|0.66|1|1|1|3|0|136; (*GB) gi|296386|emb|CAA50575.1| (e_value=6e-96) cytochrome b5 [Nicotiana tabacum];; (*SWP) sp|P49098|CYB5_TOBAC (e_value=3e-97) Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=1e-76) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc06g007930.2.1 (e_value=9e-90) genomic_reference:SL2.40ch06 gene_region:1803614-1806403 transcript_region:SL2.40ch06:1803614..1806403+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** B6TTI9_MAIZE); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00017137g0004.1 protein AED:0.17 eAED:0.17 QI:26|0.66|0.25|1|1|0.75|4|0|184; (*GB) gi|224086759|ref|XP_002307952.1| (e_value=2e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA23|SYP51_ARATH (e_value=5e-75) Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1;; (*TAIR) AT1G16240.2 (e_value=3e-76) | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232;; (*ITAG) Solyc10g081060.1.1 (e_value=5e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61566361-61567698 transcript_region:SL2.40ch10:61566361..61567698+ functional_description:"Syntaxin-51 (AHRD V1 ***- SYP51_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; NbS00023134g0003.1 protein AED:0.17 eAED:0.17 QI:415|1|1|1|1|1|9|648|430; (*GB) gi|146424382|emb|CAM97883.1| (e_value=0.0) actin-related protein 3 [Nicotiana tabacum];; (*SWP) sp|Q6K908|ARP3_ORYSJ (e_value=0.0) Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1;; (*TAIR) AT1G13180.1 (e_value=0.0) | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase superfamily protein | chr1:4495394-4498204 FORWARD LENGTH=427;; (*ITAG) Solyc05g013940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7411274-7417285 transcript_region:SL2.40ch05:7411274..7417285- go_terms:GO:0005524,GO:0051015 functional_description:"Actin-like protein 3 (AHRD V1 **** B6SSZ5_MAIZE); contains Interpro domain(s) IPR015623 Actin-related protein 3 "; GO:0005524,GO:0051015 NbS00036660g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|357124750|ref|XP_003564060.1| (e_value=4e-49) PREDICTED: uncharacterized protein LOC100837765 [Brachypodium distachyon];; (*TAIR) AT1G21150.1 (e_value=1e-31) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc12g010650.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00036660g0002.1 protein AED:0.28 eAED:0.30 QI:0|1|0.5|1|0|0|2|131|664; (*GB) gi|225430918|ref|XP_002270435.1| (e_value=3e-100) PREDICTED: protein KRI1 homolog [Vitis vinifera];; (*SWP) sp|Q8N9T8|KRI1_HUMAN (e_value=9e-17) Protein KRI1 homolog OS=Homo sapiens GN=KRI1 PE=1 SV=2;; (*TAIR) AT3G24080.2 (e_value=2e-68) | Symbols: | KRR1 family protein | chr3:8695191-8697107 REVERSE LENGTH=630;; (*ITAG) Solyc07g064350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63761602-63763458 transcript_region:SL2.40ch07:63761602..63763458- functional_description:"Protein KRI1 homolog (AHRD V1 *--- KRI1_BOVIN); contains Interpro domain(s) IPR007851 KRR1 interacting protein 1, subgroup "; NbS00036660g0005.1 protein AED:0.73 eAED:0.81 QI:0|0|0|0.6|1|1|5|0|96 NbS00051599g0003.1 protein AED:0.00 eAED:0.00 QI:137|1|1|1|0.66|0.5|4|120|291; (*GB) gi|350536679|ref|NP_001234003.1| (e_value=8e-151) psi14B protein [Solanum lycopersicum];; (*SWP) sp|Q9FZ62|PPSP2_ARATH (e_value=1e-127) Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=At1g17710 PE=2 SV=1;; (*TAIR) AT1G17710.1 (e_value=8e-129) | Symbols: | Pyridoxal phosphate phosphatase-related protein | chr1:6090763-6091975 REVERSE LENGTH=279;; (*ITAG) Solyc03g121420.2.1 (e_value=2e-172) genomic_reference:SL2.40ch03 gene_region:63588511-63589972 transcript_region:SL2.40ch03:63588511..63589972+ go_terms:GO:0003824 functional_description:"Phosphatase (AHRD V1 ***- D2V497_NAEGR); contains Interpro domain(s) IPR016965 Pyridoxal phosphate phosphatase, PHOSPHO2 "; GO:0003824 NbS00033838g0007.1 protein AED:0.04 eAED:0.04 QI:104|1|1|1|1|1|4|307|232; (*GB) gi|224134643|ref|XP_002321873.1| (e_value=1e-117) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51880.1 (e_value=2e-104) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:21089395-21090775 FORWARD LENGTH=250;; (*ITAG) Solyc03g006820.2.1 (e_value=3e-149) genomic_reference:SL2.40ch03 gene_region:1322822-1326576 transcript_region:SL2.40ch03:1322822..1326576- go_terms:GO:0055114 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family family (Fragment) (AHRD V1 **-- Q08MC8_STIAU); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00033838g0002.1 protein AED:0.14 eAED:0.14 QI:85|0.33|0.5|1|1|1|4|223|389; (*GB) gi|255539599|ref|XP_002510864.1| (e_value=3e-173) Peroxidase 66 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LT91|PER66_ARATH (e_value=4e-164) Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1;; (*TAIR) AT5G51890.1 (e_value=3e-165) | Symbols: | Peroxidase superfamily protein | chr5:21091163-21092335 REVERSE LENGTH=322;; (*ITAG) Solyc03g006810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1320783-1322165 transcript_region:SL2.40ch03:1320783..1322165+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** D7MRK0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00012569g0012.1 protein AED:0.15 eAED:0.15 QI:134|1|1|1|0.83|0.71|7|156|249; (*GB) gi|82623405|gb|ABB87117.1| (e_value=3e-144) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=2e-135) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT4G31700.1 (e_value=3e-135) | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4:15346306-15347714 REVERSE LENGTH=250;; (*ITAG) Solyc08g074240.2.1 (e_value=3e-146) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00012569g0015.1 protein AED:0.23 eAED:0.24 QI:0|0.6|0.81|1|0.5|0.63|11|265|379; (*GB) gi|225430502|ref|XP_002285549.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 60 [Vitis vinifera];; (*SWP) sp|Q9SZ53|P2C60_ARATH (e_value=6e-168) Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1;; (*TAIR) AT4G31860.1 (e_value=5e-169) | Symbols: | Protein phosphatase 2C family protein | chr4:15406685-15408589 REVERSE LENGTH=357;; (*ITAG) Solyc08g006060.2.1 (e_value=3e-179) genomic_reference:SL2.40ch08 gene_region:807001-823843 transcript_region:SL2.40ch08:807001..823843- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- C9E7A0_9CILI); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00052554g0007.1 protein AED:0.27 eAED:0.28 QI:0|0.66|0.5|1|0.66|0.8|10|0|490; (*GB) gi|255572355|ref|XP_002527116.1| (e_value=3e-74) mRNA splicing factor, putative [Ricinus communis];; (*SWP) sp|Q9H0L4|CSTFT_HUMAN (e_value=4e-22) Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1;; (*TAIR) AT1G71800.1 (e_value=1e-64) | Symbols: CSTF64 | cleavage stimulating factor 64 | chr1:26999606-27001850 FORWARD LENGTH=461;; (*ITAG) Solyc02g069160.2.1 (e_value=1e-96) genomic_reference:SL2.40ch02 gene_region:33681620-33689059 transcript_region:SL2.40ch02:33681620..33689059+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q16HY2_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00052554g0004.1 protein AED:0.33 eAED:0.33 QI:219|0.6|0.5|0.83|1|0.83|6|0|271; (*GB) gi|359491329|ref|XP_003634267.1| (e_value=4e-112) PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera];; (*SWP) sp|Q9CWP6|MSPD2_MOUSE (e_value=3e-15) Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2;; (*TAIR) AT5G63060.1 (e_value=6e-102) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr5:25295082-25296714 REVERSE LENGTH=263;; (*ITAG) Solyc03g112640.2.1 (e_value=4e-148) genomic_reference:SL2.40ch03 gene_region:57071472-57075375 transcript_region:SL2.40ch03:57071472..57075375+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein (AHRD V1 **-- B6UD95_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00035347g0006.1 protein AED:0.14 eAED:0.14 QI:362|1|1|1|0.75|0.8|5|182|455; (*GB) gi|225444361|ref|XP_002264829.1| (e_value=0.0) PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O50046|TRPB_CAMAC (e_value=0.0) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1;; (*TAIR) AT5G28237.1 (e_value=0.0) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr5:10207477-10213542 REVERSE LENGTH=465;; (*ITAG) Solyc10g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:234474-236768 transcript_region:SL2.40ch10:234474..236768+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0004834 NbS00027904g0003.1 protein AED:0.06 eAED:0.06 QI:90|1|1|1|1|1|3|220|274; (*GB) gi|6552361|dbj|BAA88222.1| (e_value=8e-180) myb-related transcription factor LBM2 [Nicotiana tabacum];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=1e-77) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=3e-88) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc06g053610.2.1 (e_value=5e-129) genomic_reference:SL2.40ch06 gene_region:32918455-32921611 transcript_region:SL2.40ch06:32918455..32921611- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* A7ULI0_DATME); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003700 NbS00018432g0013.1 protein AED:0.31 eAED:0.31 QI:173|0.5|0.6|1|0.75|0.8|5|91|155; (*GB) gi|255549607|ref|XP_002515855.1| (e_value=2e-32) fk506 binding protein, putative [Ricinus communis];; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=9e-33) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=7e-34) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=8e-33) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00018432g0003.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|80 NbS00018432g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|157; (*ITAG) Solyc11g071780.1.1 (e_value=9e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52235043-52235549 transcript_region:SL2.40ch11:52235043..52235549- functional_description:"Unknown Protein (AHRD V1)"; NbS00042062g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225439354|ref|XP_002270752.1| (e_value=9e-16) PREDICTED: uncharacterized protein LOC100259819 [Vitis vinifera];; (*ITAG) Solyc10g081700.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62035823-62036750 transcript_region:SL2.40ch10:62035823..62036750+ functional_description:"Pollen preferential protein (AHRD V1 *-*- Q43713_LILLO)"; NbS00004709g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|0|0.33|3|0|158; (*GB) gi|225437314|ref|XP_002263866.1| (e_value=2e-24) PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera];; (*TAIR) AT4G02485.1 (e_value=6e-20) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:1092695-1094437 FORWARD LENGTH=226;; (*ITAG) Solyc09g074920.2.1 (e_value=4e-57) genomic_reference:SL2.40ch09 gene_region:62212259-62216591 transcript_region:SL2.40ch09:62212259..62216591- functional_description:"Alkylated DNA repair protein alkB homolog 8 (AHRD V1 **-- ALKB8_XENTR)"; NbS00004709g0014.1 protein AED:0.06 eAED:0.06 QI:99|1|1|1|1|1|10|378|508; (*GB) gi|209968968|emb|CAL64061.1| (e_value=0.0) putative WEE1 kinase [Nicotiana tabacum];; (*SWP) sp|Q8L4H0|WEE1_ARATH (e_value=0.0) Wee1-like protein kinase OS=Arabidopsis thaliana GN=WEE1 PE=1 SV=1;; (*TAIR) AT1G02970.1 (e_value=0.0) | Symbols: WEE1, ATWEE1 | WEE1 kinase homolog | chr1:673408-676127 FORWARD LENGTH=500;; (*ITAG) Solyc09g074830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62153837-62158432 transcript_region:SL2.40ch09:62153837..62158432- go_terms:GO:0004672 functional_description:"Protein kinase (AHRD V1 *-** Q7Z8U3_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00004709g0019.1 protein AED:0.36 eAED:0.55 QI:0|0|0|1|0|0|3|0|262; (*GB) gi|224020968|ref|YP_002608201.1| (e_value=9e-91) cytochrome c biogenesis FN [Carica papaya];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=4e-92) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=2e-52) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc11g063630.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46729216-46730115 transcript_region:SL2.40ch11:46729216..46730115+ go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 ***- B3GYE6_ACTP7); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00004709g0017.1 protein AED:0.23 eAED:0.34 QI:0|0|0|1|0|0|5|0|247; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=4e-17) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc07g019500.2.1 (e_value=3e-25) genomic_reference:SL2.40ch07 gene_region:11851886-11852770 transcript_region:SL2.40ch07:11851886..11852770+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034811g0011.1 protein AED:0.24 eAED:0.24 QI:137|1|1|1|1|1|3|260|204; (*GB) gi|359479647|ref|XP_003632316.1| (e_value=6e-135) PREDICTED: proteasome subunit beta type-2-A-like [Vitis vinifera];; (*SWP) sp|O23714|PSB2A_ARATH (e_value=2e-130) Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1;; (*TAIR) AT3G22630.1 (e_value=1e-131) | Symbols: PBD1, PRCGB | 20S proteasome beta subunit D1 | chr3:8009709-8010774 REVERSE LENGTH=204;; (*ITAG) Solyc09g082320.2.1 (e_value=7e-150) genomic_reference:SL2.40ch09 gene_region:63473246-63478374 transcript_region:SL2.40ch09:63473246..63478374- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9RTN1_RICCO); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00034811g0013.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.6|1|0.75|0.6|5|0|241; (*GB) gi|225432724|ref|XP_002278974.1| (e_value=2e-34) PREDICTED: uncharacterized protein LOC100257872 [Vitis vinifera];; (*TAIR) AT2G48140.1 (e_value=2e-24) | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687444 FORWARD LENGTH=200;; (*ITAG) Solyc09g082300.2.1 (e_value=2e-93) genomic_reference:SL2.40ch09 gene_region:63468458-63469664 transcript_region:SL2.40ch09:63468458..63469664+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00034811g0015.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0.33|1|0.5|1|3|0|230; (*ITAG) Solyc09g082310.1.1 (e_value=1e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:63470351-63472793 transcript_region:SL2.40ch09:63470351..63472793+ go_terms:GO:0006364 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage "; GO:0006364 NbS00018358g0015.1 protein AED:0.24 eAED:0.29 QI:517|0.44|0.7|1|0.66|0.7|10|707|327; (*GB) gi|76160945|gb|ABA40436.1| (e_value=6e-136) serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum];; (*SWP) sp|Q7Y0B9|SAPK8_ORYSJ (e_value=8e-117) Serine/threonine-protein kinase SAPK8 OS=Oryza sativa subsp. japonica GN=SAPK8 PE=2 SV=1;; (*TAIR) AT4G33950.2 (e_value=8e-120) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | Protein kinase superfamily protein | chr4:16272819-16274657 FORWARD LENGTH=314;; (*ITAG) Solyc02g090390.2.1 (e_value=8e-141) genomic_reference:SL2.40ch02 gene_region:46520412-46525986 transcript_region:SL2.40ch02:46520412..46525986- go_terms:GO:0004683 functional_description:"Serine-threonine protein kinase (AHRD V1 **** O24395_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004683 NbS00018358g0014.1 protein AED:0.09 eAED:0.09 QI:23|1|1|1|1|1|5|7|296; (*GB) gi|225468508|ref|XP_002270797.1| (e_value=3e-40) PREDICTED: reticulon-like protein B13 [Vitis vinifera];; (*SWP) sp|O64837|RTNLM_ARATH (e_value=1e-26) Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1;; (*TAIR) AT2G23640.1 (e_value=8e-28) | Symbols: RTNLB13 | Reticulan like protein B13 | chr2:10057554-10059042 FORWARD LENGTH=206;; (*ITAG) Solyc02g090370.2.1 (e_value=1e-47) genomic_reference:SL2.40ch02 gene_region:46505452-46507309 transcript_region:SL2.40ch02:46505452..46507309+ go_terms:GO:0005783 functional_description:"Reticulon-like protein B13 (AHRD V1 ***- RTNLM_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00018358g0013.1 protein AED:0.16 eAED:0.16 QI:154|1|1|1|1|1|5|507|850; (*GB) gi|66737320|gb|AAY54606.1| (e_value=0.0) NRG1 [Nicotiana benthamiana];; (*SWP) sp|Q9FKZ1|DRL42_ARATH (e_value=1e-148) Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=2 SV=1;; (*TAIR) AT5G66900.1 (e_value=8e-150) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:26714931-26717757 REVERSE LENGTH=809;; (*ITAG) Solyc02g090380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46515185-46519334 transcript_region:SL2.40ch02:46515185..46519334+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00018358g0016.1 protein AED:0.54 eAED:0.54 QI:0|0.33|0.25|0.5|0.33|0.5|4|0|103; (*GB) gi|356537694|ref|XP_003537360.1| (e_value=4e-31) PREDICTED: uncharacterized protein LOC100786835 [Glycine max];; (*TAIR) AT3G19080.1 (e_value=6e-24) | Symbols: | SWIB complex BAF60b domain-containing protein | chr3:6596082-6598667 FORWARD LENGTH=462;; (*ITAG) Solyc01g108290.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:87405735-87410001 transcript_region:SL2.40ch01:87405735..87410001+ go_terms:GO:0005515,GO:0003701 functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 ***- B6SZA4_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0005515,GO:0003701 NbS00018358g0105.1 protein AED:0.13 eAED:0.13 QI:181|1|1|1|1|1|8|261|538 NbS00029236g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.37|0.44|1|0.37|0.33|9|200|284; (*GB) gi|224062103|ref|XP_002300756.1| (e_value=2e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|O81077|ABAH2_ARATH (e_value=3e-32) Abscisic acid 8'-hydroxylase 2 OS=Arabidopsis thaliana GN=CYP707A2 PE=2 SV=1;; (*TAIR) AT1G19630.1 (e_value=7e-83) | Symbols: CYP722A1 | cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476;; (*ITAG) Solyc04g080650.2.1 (e_value=4e-106) genomic_reference:SL2.40ch04 gene_region:62354246-62358818 transcript_region:SL2.40ch04:62354246..62358818- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00027802g0006.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|0|0|3|138|204; (*GB) gi|92429381|gb|ABE77148.1| (e_value=1e-38) putative WRKY transcription factor [Nicotiana tabacum];; (*SWP) sp|Q93WU9|WRK51_ARATH (e_value=4e-26) Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1;; (*TAIR) AT5G64810.1 (e_value=3e-27) | Symbols: WRKY51, ATWRKY51 | WRKY DNA-binding protein 51 | chr5:25908415-25909687 FORWARD LENGTH=194;; (*ITAG) Solyc12g056750.1.1 (e_value=4e-51) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:48196449-48199052 transcript_region:SL2.40ch12:48196449..48199052- go_terms:GO:0045449 functional_description:"WRKY transcription factor 7 (AHRD V1 *-*- Q20DQ1_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00027802g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.33|1|1|0.83|6|0|183; (*GB) gi|623592|gb|AAA74120.1| (e_value=3e-130) putative [Nicotiana tabacum];; (*SWP) sp|Q41640|RAB7_VIGAC (e_value=2e-126) Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1;; (*TAIR) AT4G09720.1 (e_value=9e-118) | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A | chr4:6133101-6134959 FORWARD LENGTH=206;; (*ITAG) Solyc04g072060.2.1 (e_value=1e-135) genomic_reference:SL2.40ch04 gene_region:56710003-56720195 transcript_region:SL2.40ch04:56710003..56720195- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-7a (AHRD V1 ***- C1C1X4_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00025034g0007.1 protein AED:0.06 eAED:0.09 QI:0|0|0|0.75|0.28|0.5|8|0|535; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-140) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g067450.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:68529763-68532921 transcript_region:SL2.40ch01:68529763..68532921- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbC25811308g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.87|0.55|1|1|0.88|9|0|318; (*GB) gi|350534526|ref|NP_001233889.1| (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum];; (*SWP) sp|Q42877|RPB2_SOLLC (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1;; (*TAIR) AT4G21710.1 (e_value=0.0) | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA polymerase family protein | chr4:11535684-11542200 REVERSE LENGTH=1188;; (*ITAG) Solyc02g078260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37583500-37591044 transcript_region:SL2.40ch02:37583500..37591044+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Y9_PETHY); contains Interpro domain(s) IPR007121 RNA polymerase, beta subunit, conserved site IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00045899g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|170; (*GB) gi|118485277|gb|ABK94498.1| (e_value=1e-18) unknown [Populus trichocarpa];; (*ITAG) Solyc06g065340.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37149542-37150216 transcript_region:SL2.40ch06:37149542..37150216- functional_description:"Unknown Protein (AHRD V1)"; NbS00032281g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|948; (*GB) gi|225457283|ref|XP_002284415.1| (e_value=0.0) PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Vitis vinifera];; (*SWP) sp|O60231|DHX16_HUMAN (e_value=0.0) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2;; (*TAIR) AT1G32490.1 (e_value=0.0) | Symbols: EMB2733, ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1044;; (*ITAG) Solyc03g115390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00051799g0005.1 protein AED:0.18 eAED:0.18 QI:837|0.57|0.62|0.87|0.57|0.62|8|0|108; (*GB) gi|7757910|gb|AAD52847.2|AF137288_1 (e_value=1e-61) putative translation initiation factor 2B beta subunit [Nicotiana tabacum];; (*SWP) sp|Q54EY2|EI2BB_DICDI (e_value=4e-27) Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1;; (*TAIR) AT3G07300.2 (e_value=5e-59) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr3:2324967-2327380 REVERSE LENGTH=407;; (*ITAG) Solyc11g005600.1.1 (e_value=6e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:450933-456855 transcript_region:SL2.40ch11:450933..456855- go_terms:GO:0003743 functional_description:"Translation initiation factor 2B (AHRD V1 **** Q2UBN6_ASPOR); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0003743 NbS00002465g0007.1 protein AED:0.38 eAED:0.44 QI:105|0.66|0.57|0.85|1|0.85|7|0|229; (*GB) gi|255542546|ref|XP_002512336.1| (e_value=5e-97) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G27390.1 (e_value=3e-88) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr5:9674634-9676118 REVERSE LENGTH=241;; (*ITAG) Solyc08g043180.2.1 (e_value=7e-109) genomic_reference:SL2.40ch08 gene_region:30094083-30099554 transcript_region:SL2.40ch08:30094083..30099554- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016124 Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich "; NbS00021750g0001.1 protein AED:0.07 eAED:0.07 QI:333|1|1|1|1|1|11|485|419; (*GB) gi|147834848|emb|CAN68309.1| (e_value=6e-100) hypothetical protein VITISV_043507 [Vitis vinifera];; (*SWP) sp|Q93YR3|F10AL_ARATH (e_value=1e-87) FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1;; (*TAIR) AT4G22670.1 (e_value=1e-88) | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting protein 1 | chr4:11918236-11920671 FORWARD LENGTH=441;; (*ITAG) Solyc08g079260.2.1 (e_value=6e-102) genomic_reference:SL2.40ch08 gene_region:60032686-60038031 transcript_region:SL2.40ch08:60032686..60038031+ go_terms:GO:0030544 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- Q4RFT2_TETNG); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0030544 NbS00005715g0007.1 protein AED:0.27 eAED:0.27 QI:260|0.83|0.84|1|0.5|0.69|13|269|423; (*GB) gi|325516258|gb|ADZ24707.1| (e_value=0.0) homogentisate phytyltransferase [Solanum pennellii];; (*SWP) sp|Q8VWJ1|HPT1_ARATH (e_value=8e-166) Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1;; (*TAIR) AT2G18950.1 (e_value=6e-167) | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate phytyltransferase 1 | chr2:8207491-8210047 FORWARD LENGTH=393;; (*ITAG) Solyc07g017770.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7978855-7995019 transcript_region:SL2.40ch07:7978855..7995019+ go_terms:GO:0010176 functional_description:"Homogentisate phytyltransferase (AHRD V1 **-* B2M1Y0_MANES); contains Interpro domain(s) IPR000537 UbiA prenyltransferase "; GO:0010176 NbS00009026g0104.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|131 NbS00009026g0110.1 protein AED:0.33 eAED:0.34 QI:0|0.66|0.76|0.92|0.91|0.84|13|439|582 NbS00009026g0107.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|104 NbS00049658g0012.1 protein AED:0.33 eAED:0.37 QI:0|0.73|0.75|1|0.68|0.65|20|2464|559; (*GB) gi|296082524|emb|CBI21529.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05B50|THG1_BOVIN (e_value=2e-70) Probable tRNA(His) guanylyltransferase OS=Bos taurus GN=THG1L PE=2 SV=1;; (*TAIR) AT2G31580.1 (e_value=0.0) | Symbols: | tRNAHis guanylyltransferase | chr2:13441137-13445837 REVERSE LENGTH=567;; (*ITAG) Solyc04g051600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50039582-50055249 transcript_region:SL2.40ch04:50039582..50055249+ go_terms:GO:0005515,GO:0008193 functional_description:"tRNA(His) guanylyltransferase (AHRD V1 *-** C1GHL3_PARBD); contains Interpro domain(s) IPR007537 tRNAHis guanylyltransferase "; GO:0005515,GO:0008193 NbS00049155g0003.1 protein AED:0.58 eAED:0.58 QI:18|0.25|0.2|0.6|1|1|5|0|124 NbS00059577g0003.1 protein AED:0.18 eAED:0.18 QI:154|1|0.5|1|0|0|2|0|137; (*GB) gi|224143756|ref|XP_002325063.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57510.1 (e_value=2e-21) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23289164-23289556 REVERSE LENGTH=130;; (*ITAG) Solyc11g008600.1.1 (e_value=2e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2789140-2789544 transcript_region:SL2.40ch11:2789140..2789544- functional_description:"Genomic DNA chromosome 5 P1 clone MUA2 (AHRD V1 ***- Q9FKM0_ARATH)"; NbS00059577g0006.1 protein AED:0.19 eAED:0.24 QI:27|0.7|0.72|1|1|1|11|491|282; (*GB) gi|224101251|ref|XP_002312202.1| (e_value=2e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GY97|CSTR2_ARATH (e_value=2e-134) CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1;; (*TAIR) AT2G43240.1 (e_value=2e-135) | Symbols: | Nucleotide-sugar transporter family protein | chr2:17971280-17975300 REVERSE LENGTH=406;; (*ITAG) Solyc11g008610.1.1 (e_value=3e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2796072-2804558 transcript_region:SL2.40ch11:2796072..2804558- go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 **** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00000445g0005.1 protein AED:0.01 eAED:0.01 QI:160|1|1|1|1|1|2|513|163; (*GB) gi|224077328|ref|XP_002305213.1| (e_value=7e-18) high mobility group family [Populus trichocarpa];; (*ITAG) Solyc11g011160.1.1 (e_value=2e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:4235818-4237261 transcript_region:SL2.40ch11:4235818..4237261- go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group protein (AHRD V1 *--- Q42461_CANGL); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00000445g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0.78|1|0.92|0.78|14|0|1041; (*GB) gi|224079463|ref|XP_002305874.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P51612|XPC_MOUSE (e_value=3e-53) DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2;; (*TAIR) AT5G16630.2 (e_value=0.0) | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 family | chr5:5455325-5459461 FORWARD LENGTH=865;; (*ITAG) Solyc11g011150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4223823-4233792 transcript_region:SL2.40ch11:4223823..4233792+ go_terms:GO:0005634 functional_description:"DNA repair protein Rad4 family (AHRD V1 ***- D7M868_ARALY); contains Interpro domain(s) IPR004583 DNA repair protein Rad4 "; GO:0005634 NbS00018974g0011.1 protein AED:0.08 eAED:0.08 QI:87|0.81|0.83|1|0.63|0.66|12|411|622; (*GB) gi|559921|emb|CAA56570.1| (e_value=0.0) axi 1 [Nicotiana tabacum];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-75) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G20550.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7115485-7117936 REVERSE LENGTH=564;; (*ITAG) Solyc01g112070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89940951-89944973 transcript_region:SL2.40ch01:89940951..89944973- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00018974g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.57|0.5|1|1|0.75|8|0|370; (*GB) gi|357467621|ref|XP_003604095.1| (e_value=0.0) hypothetical protein MTR_3g118430 [Medicago truncatula];; (*SWP) sp|P48279|YCF39_CYAPA (e_value=1e-103) Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3 SV=1;; (*TAIR) AT4G35250.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16771401-16773269 REVERSE LENGTH=395;; (*ITAG) Solyc01g112060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89936997-89940250 transcript_region:SL2.40ch01:89936997..89940250- go_terms:GO:0008152 functional_description:"NmrA family protein (AHRD V1 **-- B2J8Q2_NOSP7); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00021109g0002.1 protein AED:0.13 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|529; (*GB) gi|147854387|emb|CAN79105.1| (e_value=5e-173) hypothetical protein VITISV_006257 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=3e-97) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G55110.1 (e_value=6e-109) | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560406-20562625 REVERSE LENGTH=455;; (*ITAG) Solyc03g121660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63812805-63815522 transcript_region:SL2.40ch03:63812805..63815522- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00021109g0013.1 protein AED:0.33 eAED:0.35 QI:21|0.4|0.16|1|0.8|0.5|6|0|407; (*GB) gi|297735663|emb|CBI18350.3| (e_value=6e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NQJ7|FRS4_ARATH (e_value=2e-56) Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2;; (*TAIR) AT1G76320.1 (e_value=2e-57) | Symbols: FRS4 | FAR1-related sequence 4 | chr1:28631404-28633886 FORWARD LENGTH=732;; (*ITAG) Solyc03g121630.2.1 (e_value=1e-119) genomic_reference:SL2.40ch03 gene_region:63770576-63782916 transcript_region:SL2.40ch03:63770576..63782916- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 ***- FRS4_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0003700,GO:0016563 NbS00021109g0008.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|245; (*GB) gi|359482518|ref|XP_002279880.2| (e_value=5e-49) PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera];; (*TAIR) AT1G17620.1 (e_value=1e-32) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:6062313-6063107 FORWARD LENGTH=264;; (*ITAG) Solyc03g121620.1.1 (e_value=6e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63766550-63767353 transcript_region:SL2.40ch03:63766550..63767353+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00021109g0019.1 protein AED:0.35 eAED:0.37 QI:0|1|0.71|1|1|1|7|163|636; (*GB) gi|147791516|emb|CAN64022.1| (e_value=1e-21) hypothetical protein VITISV_005264 [Vitis vinifera];; (*TAIR) AT3G62300.1 (e_value=1e-16) | Symbols: DUF7, ATDUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 | chr3:23054247-23057081 FORWARD LENGTH=722;; (*ITAG) Solyc03g121650.2.1 (e_value=4e-158) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00021109g0020.1 protein AED:0.52 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|141; (*ITAG) Solyc03g121650.2.1 (e_value=3e-24) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00049153g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|317; (*GB) gi|224142327|ref|XP_002324510.1| (e_value=1e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0B6|GAE1_ARATH (e_value=5e-164) UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1;; (*TAIR) AT4G30440.1 (e_value=4e-165) | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 | chr4:14881976-14883265 REVERSE LENGTH=429;; (*ITAG) Solyc12g010540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3531522-3532820 transcript_region:SL2.40ch12:3531522..3532820- go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00021970g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|201; (*GB) gi|225464888|ref|XP_002273638.1| (e_value=1e-48) PREDICTED: casparian strip membrane protein VIT_06s0080g00840 [Vitis vinifera];; (*SWP) sp|A7QF77|CASP1_VITVI (e_value=3e-50) Casparian strip membrane protein VIT_06s0080g00840 OS=Vitis vinifera GN=VIT_06s0080g00840 PE=2 SV=1;; (*TAIR) AT2G36100.1 (e_value=2e-44) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206;; (*ITAG) Solyc06g074230.2.1 (e_value=6e-79) genomic_reference:SL2.40ch06 gene_region:42286087-42287160 transcript_region:SL2.40ch06:42286087..42287160- functional_description:"UPF0497 membrane protein 1 (AHRD V1 ***- U4971_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00021970g0004.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|499; (*GB) gi|325516278|gb|ADZ24717.1| (e_value=0.0) lycopene b-cyclase [Solanum pennellii];; (*SWP) sp|Q9M424|NXS_SOLTU (e_value=0.0) Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1;; (*TAIR) AT3G10230.1 (e_value=0.0) | Symbols: LYC | lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501;; (*ITAG) Solyc06g074240.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:42288127-42289623 transcript_region:SL2.40ch06:42288127..42289623- go_terms:GO:0016117 functional_description:"Chromoplast-specific lycopene beta-cyclase"; GO:0016117 NbS00021970g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.62|1|1|1|8|0|544; (*GB) gi|255565701|ref|XP_002523840.1| (e_value=7e-162) expressed protein, putative [Ricinus communis];; (*SWP) sp|Q2YDU3|OTUD5_RAT (e_value=3e-51) OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2;; (*TAIR) AT2G27350.6 (e_value=9e-133) | Symbols: | OTU-like cysteine protease family protein | chr2:11699780-11702363 REVERSE LENGTH=506;; (*ITAG) Solyc06g074220.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42278140-42285465 transcript_region:SL2.40ch06:42278140..42285465- functional_description:"OTU domain containing protein (AHRD V1 *-*- D3BI79_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00021970g0017.1 protein AED:0.32 eAED:0.38 QI:0|0.25|0|0.6|1|1|5|0|239; (*GB) gi|255565693|ref|XP_002523836.1| (e_value=5e-129) Vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|Q9FMR5|VA714_ARATH (e_value=4e-121) Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1;; (*TAIR) AT5G22360.1 (e_value=3e-122) | Symbols: ATVAMP714, VAMP714 | vesicle-associated membrane protein 714 | chr5:7404379-7405654 REVERSE LENGTH=221;; (*ITAG) Solyc06g074250.2.1 (e_value=3e-132) genomic_reference:SL2.40ch06 gene_region:42290491-42294509 transcript_region:SL2.40ch06:42290491..42294509- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7C (AHRD V1 **-- D7MAR2_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00004638g0018.1 protein AED:0.05 eAED:0.05 QI:75|1|1|1|0.83|0.71|7|271|239; (*GB) gi|225458011|ref|XP_002280149.1| (e_value=3e-145) PREDICTED: probable diphthine synthase isoform 1 [Vitis vinifera];; (*SWP) sp|O81769|DPH5_ARATH (e_value=8e-144) Probable diphthine synthase OS=Arabidopsis thaliana GN=At4g31790 PE=2 SV=1;; (*TAIR) AT4G31790.2 (e_value=6e-145) | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methylases | chr4:15377479-15378530 FORWARD LENGTH=277;; (*ITAG) Solyc04g081310.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:62937111-62940932 transcript_region:SL2.40ch04:62937111..62940932- go_terms:GO:0004164,GO:0042802 functional_description:"Diphthine synthase (AHRD V1 **** B8APT0_ORYSI); contains Interpro domain(s) IPR004551 Diphthine synthase "; GO:0004164,GO:0042802 NbS00004638g0012.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|0|0.2|5|404|158; (*GB) gi|118489193|gb|ABK96403.1| (e_value=1e-71) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q8GSJ6|LQY1_ARATH (e_value=2e-62) Protein disulfide-isomerase LQY1 OS=Arabidopsis thaliana GN=LQY1 PE=1 SV=1;; (*TAIR) AT1G75690.1 (e_value=1e-63) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr1:28422273-28423170 REVERSE LENGTH=154;; (*ITAG) Solyc04g081320.2.1 (e_value=9e-90) genomic_reference:SL2.40ch04 gene_region:62941333-62944465 transcript_region:SL2.40ch04:62941333..62944465- go_terms:GO:0006457 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00004638g0014.1 protein AED:0.37 eAED:0.37 QI:0|1|0.4|1|0.75|0.8|5|0|324; (*GB) gi|225458007|ref|XP_002276474.1| (e_value=2e-86) PREDICTED: HVA22-like protein i [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=9e-78) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.3 (e_value=4e-79) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015703-17016969 FORWARD LENGTH=285;; (*ITAG) Solyc04g081340.2.1 (e_value=1e-109) genomic_reference:SL2.40ch04 gene_region:62952319-62954648 transcript_region:SL2.40ch04:62952319..62954648+ functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 *--- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00004638g0011.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|86 NbS00004638g0016.1 protein AED:0.16 eAED:0.16 QI:138|1|1|1|0.75|0.84|13|420|447; (*GB) gi|225458003|ref|XP_002280127.1| (e_value=0.0) PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Vitis vinifera];; (*SWP) sp|Q54UB1|TRM6_DICDI (e_value=2e-69) tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1;; (*TAIR) AT2G45730.1 (e_value=0.0) | Symbols: | eukaryotic initiation factor 3 gamma subunit family protein | chr2:18836519-18839123 REVERSE LENGTH=446;; (*ITAG) Solyc04g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62963579-62969484 transcript_region:SL2.40ch04:62963579..62969484- go_terms:GO:0005515,GO:0016429 functional_description:"tRNA (Adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 (AHRD V1 *-** C5JJB9_AJEDS); contains Interpro domain(s) IPR007316 Eukaryotic initiation factor 3, gamma subunit "; GO:0005515,GO:0016429 NbS00004638g0006.1 protein AED:0.30 eAED:0.30 QI:134|0.75|0.88|0.88|1|1|9|0|258; (*GB) gi|302142646|emb|CBI19849.3| (e_value=4e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FV70|E2FC_ARATH (e_value=4e-46) Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1;; (*TAIR) AT1G47870.1 (e_value=3e-47) | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-binding transcription factor family protein | chr1:17634937-17637557 FORWARD LENGTH=396;; (*ITAG) Solyc04g081350.2.1 (e_value=8e-84) genomic_reference:SL2.40ch04 gene_region:62955513-62961934 transcript_region:SL2.40ch04:62955513..62961934- go_terms:GO:0003700 functional_description:"Transcription factor E2F (AHRD V1 **** B9GQW1_POPTR); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003700 NbS00004638g0005.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.5|1|1|2|0|145 NbS00015356g0004.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|327; (*GB) gi|224136548|ref|XP_002322357.1| (e_value=2e-99) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12920.1 (e_value=1e-81) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr3:4122127-4123323 REVERSE LENGTH=335;; (*ITAG) Solyc02g069180.2.1 (e_value=3e-152) genomic_reference:SL2.40ch02 gene_region:33713714-33716151 transcript_region:SL2.40ch02:33713714..33716151+ functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY)"; NbC26316418g0007.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|2|0|307; (*GB) gi|359478116|ref|XP_003632072.1| (e_value=4e-60) PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Vitis vinifera];; (*SWP) sp|Q8W468|ARI8_ARATH (e_value=3e-60) Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1;; (*TAIR) AT1G65430.1 (e_value=2e-61) | Symbols: ARI8, ATARI8 | IBR domain-containing protein | chr1:24301165-24306159 REVERSE LENGTH=567;; (*ITAG) Solyc01g005650.1.1 (e_value=3e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:455379-456988 transcript_region:SL2.40ch01:455379..456988- go_terms:GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0004842 NbS00060723g0010.1 protein AED:0.04 eAED:0.05 QI:0|0.66|0.25|1|1|1|4|0|426; (*GB) gi|225452192|ref|XP_002266268.1| (e_value=0.0) PREDICTED: cytosolic Fe-S cluster assembly factor nubp1-like [Vitis vinifera];; (*SWP) sp|A7RUD5|NUBP1_NEMVE (e_value=3e-124) Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Nematostella vectensis GN=v1g236650 PE=3 SV=1;; (*TAIR) AT5G50960.1 (e_value=0.0) | Symbols: NBP35, ATNBP35 | nucleotide binding protein 35 | chr5:20734267-20735824 FORWARD LENGTH=350;; (*ITAG) Solyc12g096690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63852475-63854787 transcript_region:SL2.40ch12:63852475..63854787- go_terms:GO:0005524 functional_description:"Cytosolic Fe-S cluster assembly factor nbp35 (AHRD V1 ***- NBP35_EMENI); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0005524 NbS00060723g0008.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|1|1|2|0|330; (*GB) gi|224131918|ref|XP_002328140.1| (e_value=1e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=6e-156) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=4e-157) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00060723g0013.1 protein AED:0.43 eAED:0.93 QI:0|0|0.5|1|0|0.5|2|40|141; (*GB) gi|224131918|ref|XP_002328140.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=3e-70) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=2e-71) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=5e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00060723g0003.1 protein AED:0.01 eAED:0.01 QI:182|1|1|1|0.66|0.7|10|621|402; (*GB) gi|297733914|emb|CBI15161.3| (e_value=4e-116) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G61200.3 (e_value=4e-88) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G07890.3). | chr5:24620456-24622081 FORWARD LENGTH=389;; (*ITAG) Solyc12g036300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30679351-30690582 transcript_region:SL2.40ch12:30679351..30690582+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 ***- Q9SD95_ARATH)"; NbS00061305g0009.1 protein AED:0.06 eAED:0.06 QI:212|1|1|1|0.83|0.92|13|211|445; (*GB) gi|146272052|emb|CAM97308.1| (e_value=0.0) Rab-GDP dissociation inhibitor [Solanum lycopersicum];; (*SWP) sp|P50396|GDIA_MOUSE (e_value=0.0) Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3;; (*TAIR) AT5G09550.1 (e_value=0.0) | Symbols: | GDP dissociation inhibitor family protein / Rab GTPase activator family protein | chr5:2963850-2966465 FORWARD LENGTH=445;; (*ITAG) Solyc01g105810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85610091-85615976 transcript_region:SL2.40ch01:85610091..85615976+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab-GDP dissociation inhibitor (AHRD V1 **** A5CKE3_SOLLC); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00061305g0010.1 protein AED:0.10 eAED:0.10 QI:330|0.8|0.81|1|0.7|0.72|11|35|504; (*GB) gi|255563308|ref|XP_002522657.1| (e_value=5e-95) sentrin/sumo-specific protease, putative [Ricinus communis];; (*SWP) sp|Q0WKV8|ULP2A_ARATH (e_value=5e-74) Probable ubiquitin-like-specific protease 2A OS=Arabidopsis thaliana GN=ULP2A PE=2 SV=2;; (*TAIR) AT4G33620.1 (e_value=2e-75) | Symbols: | Cysteine proteinases superfamily protein | chr4:16147692-16152853 FORWARD LENGTH=783;; (*ITAG) Solyc01g105830.2.1 (e_value=6e-125) genomic_reference:SL2.40ch01 gene_region:85619534-85633587 transcript_region:SL2.40ch01:85619534..85633587+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease (AHRD V1 *-*- C9SFV0_VERA1); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00012802g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|890; (*GB) gi|359493687|ref|XP_003634651.1| (e_value=0.0) PREDICTED: receptor-like protein kinase THESEUS 1-like [Vitis vinifera];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=0.0) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=0.0) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc10g006870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1295869-1298391 transcript_region:SL2.40ch10:1295869..1298391- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00012802g0005.1 protein AED:0.16 eAED:0.16 QI:89|0.5|0.66|1|0|0|3|154|206; (*ITAG) Solyc12g013540.1.1 (e_value=6e-54) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4393942-4396738 transcript_region:SL2.40ch12:4393942..4396738+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007213g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.8|1|1|1|5|388|320; (*GB) gi|77999285|gb|ABB16989.1| (e_value=2e-90) DnaJ-like protein [Solanum tuberosum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-85) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=2e-80) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc04g009770.2.1 (e_value=3e-95) genomic_reference:SL2.40ch04 gene_region:3081668-3086277 transcript_region:SL2.40ch04:3081668..3086277+ go_terms:GO:0051082 functional_description:"DNAJ chaperone (AHRD V1 ***- Q1HR50_AEDAE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00007213g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|143; (*GB) gi|255566181|ref|XP_002524078.1| (e_value=8e-15) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FG21|ATL71_ARATH (e_value=1e-12) Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1;; (*TAIR) AT5G06490.1 (e_value=9e-14) | Symbols: | RING/U-box superfamily protein | chr5:1977996-1978589 REVERSE LENGTH=197;; (*ITAG) Solyc04g009780.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:3087597-3088157 transcript_region:SL2.40ch04:3087597..3088157+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007213g0010.1 protein AED:0.10 eAED:0.10 QI:318|0.5|0.42|0.85|0.5|0.42|7|0|779; (*GB) gi|225439372|ref|XP_002270072.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc04g009790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3090794-3100196 transcript_region:SL2.40ch04:3090794..3100196- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0016020 NbS00021669g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0.5|0.5|1|1|2|500|96 NbS00021669g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.8|1|1|0.8|1|6|516|442; (*GB) gi|298204572|emb|CBI23847.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24690.1 (e_value=5e-168) | Symbols: | Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521;; (*ITAG) Solyc01g104270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84460019-84465624 transcript_region:SL2.40ch01:84460019..84465624+ go_terms:GO:0005524 functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; GO:0005524 NbS00026229g0003.1 protein AED:0.22 eAED:0.49 QI:0|1|0.5|1|0|0.5|2|0|132; (*GB) gi|255574684|ref|XP_002528251.1| (e_value=6e-24) copper ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=1e-17) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT4G28365.1 (e_value=7e-20) | Symbols: ENODL3, AtENODL3 | early nodulin-like protein 3 | chr4:14033012-14033688 REVERSE LENGTH=199;; (*ITAG) Solyc07g053880.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00020548g0004.1 protein AED:0.18 eAED:0.18 QI:216|1|0.83|1|1|0.83|6|0|345; (*GB) gi|307940738|gb|ADN95983.1| (e_value=4e-130) G-strand specific single-stranded telomere-binding protein 1 [Nicotiana tabacum];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=2e-42) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT3G13224.2 (e_value=2e-86) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4254848-4256621 FORWARD LENGTH=358;; (*ITAG) Solyc07g045240.2.1 (e_value=7e-116) genomic_reference:SL2.40ch07 gene_region:55694997-55697651 transcript_region:SL2.40ch07:55694997..55697651+ go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00042403g0001.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|193527448|gb|ACF19789.1| (e_value=4e-18) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=8e-52) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00057190g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0.42|1|0.83|0.71|7|378|650; (*GB) gi|375300672|gb|AFA46813.1| (e_value=0.0) neutral/alkaline invertase [Manihot esculenta];; (*TAIR) AT1G56560.1 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr1:21192593-21194948 FORWARD LENGTH=616;; (*ITAG) Solyc01g100810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82498414-82504152 transcript_region:SL2.40ch01:82498414..82504152- go_terms:GO:0004564 functional_description:"Neutral invertase (AHRD V1 ***- A7LH71_VITVI); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0004564 NbS00013517g0010.1 protein AED:0.05 eAED:0.05 QI:93|0.5|0.33|0.66|1|0.66|3|0|100; (*GB) gi|388502560|gb|AFK39346.1| (e_value=7e-46) unknown [Medicago truncatula];; (*TAIR) AT1G10410.1 (e_value=7e-44) | Symbols: | Protein of unknown function (DUF1336) | chr1:3416842-3419264 REVERSE LENGTH=485;; (*ITAG) Solyc04g005860.2.1 (e_value=9e-55) genomic_reference:SL2.40ch04 gene_region:546882-552341 transcript_region:SL2.40ch04:546882..552341- functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00013517g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|127; (*GB) gi|57013896|ref|YP_173370.1| (e_value=2e-51) hypothetical protein NitaMp023 [Nicotiana tabacum]; NbS00039136g0011.1 protein AED:0.13 eAED:0.15 QI:37|0.91|0.53|1|0.91|0.84|13|294|1607; (*GB) gi|359473809|ref|XP_002264994.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254102 [Vitis vinifera];; (*TAIR) AT1G24300.1 (e_value=3e-124) | Symbols: | GYF domain-containing protein | chr1:8614515-8620420 REVERSE LENGTH=1495;; (*ITAG) Solyc05g015930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13046102-13054405 transcript_region:SL2.40ch05:13046102..13054405+ functional_description:"GYF domain-containing protein (AHRD V1 *-*- D7KBQ1_ARALY); contains Interpro domain(s) IPR003169 GYF "; NbS00039136g0012.1 protein AED:0.38 eAED:0.41 QI:0|0.4|0|0.83|1|1|6|0|213; (*GB) gi|125545460|gb|EAY91599.1| (e_value=5e-51) hypothetical protein OsI_13234 [Oryza sativa Indica Group];; (*SWP) sp|Q03684|BIP4_TOBAC (e_value=1e-33) Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1;; (*TAIR) AT5G42020.2 (e_value=1e-33) | Symbols: BIP | Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=613;; (*ITAG) Solyc03g082920.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:46341372-46345339 transcript_region:SL2.40ch03:46341372..46345339- go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00039136g0014.1 protein AED:0.30 eAED:0.30 QI:62|0.2|0.5|1|0.2|0.33|6|292|226; (*GB) gi|388504214|gb|AFK40173.1| (e_value=3e-13) unknown [Medicago truncatula];; (*TAIR) AT2G35450.1 (e_value=4e-14) | Symbols: | catalytics;hydrolases | chr2:14903201-14905361 REVERSE LENGTH=346;; (*ITAG) Solyc01g009970.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:4572832-4576793 transcript_region:SL2.40ch01:4572832..4576793- go_terms:GO:0008152 functional_description:"Amidohydrolase 2 (AHRD V1 ***- Q01SB2_SOLUE); contains Interpro domain(s) IPR006992 Amidohydrolase 2 "; GO:0008152 NbS00042000g0004.1 protein AED:0.08 eAED:0.08 QI:234|0.85|0.86|1|0.85|0.86|15|779|820; (*GB) gi|225436170|ref|XP_002266075.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FtsH [Vitis vinifera];; (*SWP) sp|O78516|FTSH_GUITH (e_value=3e-85) ATP-dependent zinc metalloprotease FtsH OS=Guillardia theta GN=ftsH PE=3 SV=1;; (*TAIR) AT4G23940.1 (e_value=0.0) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00015404g0010.1 protein AED:0.21 eAED:0.21 QI:282|1|0.87|1|1|1|8|482|628; (*GB) gi|359495503|ref|XP_002273993.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256775 [Vitis vinifera];; (*TAIR) AT2G18750.3 (e_value=0.0) | Symbols: | Calmodulin-binding protein | chr2:8125827-8128363 FORWARD LENGTH=622;; (*ITAG) Solyc10g009210.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3201655-3211010 transcript_region:SL2.40ch10:3201655..3211010+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00015404g0011.1 protein AED:0.29 eAED:0.30 QI:130|0.5|0.4|1|0.25|0.8|5|0|209; (*GB) gi|359495479|ref|XP_003635000.1| (e_value=2e-21) PREDICTED: uncharacterized protein LOC100256799 [Vitis vinifera];; (*ITAG) Solyc10g009200.2.1 (e_value=1e-38) genomic_reference:SL2.40ch10 gene_region:3196501-3199644 transcript_region:SL2.40ch10:3196501..3199644+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019186 Nucleolar protein 12 "; NbS00037190g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.71|1|1|0.85|7|0|462; (*GB) gi|225461494|ref|XP_002282547.1| (e_value=0.0) PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera];; (*SWP) sp|Q9LUH3|LAL5_ARATH (e_value=3e-172) MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1;; (*TAIR) AT3G23550.1 (e_value=2e-173) | Symbols: | MATE efflux family protein | chr3:8448435-8450649 REVERSE LENGTH=469;; (*ITAG) Solyc10g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00044535g0003.1 protein AED:0.22 eAED:0.22 QI:249|1|0.75|1|1|1|8|0|220; (*GB) gi|225452785|ref|XP_002283325.1| (e_value=5e-98) PREDICTED: protein SET [Vitis vinifera];; (*SWP) sp|P53997|SET_DROME (e_value=4e-42) Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2;; (*TAIR) AT1G18800.1 (e_value=1e-95) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc02g067370.2.1 (e_value=5e-115) genomic_reference:SL2.40ch02 gene_region:32143390-32150786 transcript_region:SL2.40ch02:32143390..32150786- go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00007699g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|0.5|0.66|3|294|171; (*GB) gi|4337001|gb|AAD18030.1| (e_value=2e-61) Tsi1-interacting protein TSIP1 [Nicotiana tabacum];; (*TAIR) AT2G24860.1 (e_value=5e-27) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr2:10587118-10588240 REVERSE LENGTH=144;; (*ITAG) Solyc08g006620.2.1 (e_value=1e-45) genomic_reference:SL2.40ch08 gene_region:1216067-1220196 transcript_region:SL2.40ch08:1216067..1220196+ go_terms:GO:0006457 functional_description:"Tsi1-interacting protein TSIP1 (AHRD V1 **-- Q9ZPJ0_TOBAC); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00007699g0012.1 protein AED:0.20 eAED:0.20 QI:143|1|0.85|1|1|1|7|0|393; (*GB) gi|225454022|ref|XP_002281030.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259142 [Vitis vinifera];; (*TAIR) AT2G45320.1 (e_value=2e-173) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18684182-18686107 REVERSE LENGTH=392;; (*ITAG) Solyc08g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1210665-1214986 transcript_region:SL2.40ch08:1210665..1214986+ functional_description:"Os06g0571300 protein (Fragment) (AHRD V1 *-*- Q0DBE4_ORYSJ)"; NbS00017849g0015.1 protein AED:0.08 eAED:0.08 QI:47|0.85|0.86|1|0.64|0.73|15|572|732; (*GB) gi|359475843|ref|XP_002282918.2| (e_value=0.0) PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22756077-22781193 transcript_region:SL2.40ch08:22756077..22781193+ functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 *-*- B1AR17_MOUSE); contains Interpro domain(s) IPR009462 Protein of unknown function DUF1086 "; NbS00017849g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.87|1|0.71|0.62|8|0|415; (*GB) gi|255548778|ref|XP_002515445.1| (e_value=0.0) chromodomain helicase DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:22727475-22749048 transcript_region:SL2.40ch08:22727475..22749048+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00017849g0012.1 protein AED:0.20 eAED:0.23 QI:222|0.5|0.57|1|0.5|0.57|7|376|248; (*GB) gi|225430378|ref|XP_002285330.1| (e_value=6e-118) PREDICTED: Golgi SNARE 11 protein [Vitis vinifera];; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=2e-108) Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1;; (*TAIR) AT1G15880.1 (e_value=1e-109) | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458718-5460089 REVERSE LENGTH=223;; (*ITAG) Solyc06g065740.2.1 (e_value=6e-140) genomic_reference:SL2.40ch06 gene_region:37599549-37605829 transcript_region:SL2.40ch06:37599549..37605829+ go_terms:GO:0000149 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 ***- B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149 NbS00017849g0014.1 protein AED:0.26 eAED:0.26 QI:21|0.4|0.16|0.5|0.8|0.83|6|0|226; (*GB) gi|255548778|ref|XP_002515445.1| (e_value=3e-142) chromodomain helicase DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=1e-135) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=9e-137) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029120.1.1 (e_value=8e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:22727475-22749048 transcript_region:SL2.40ch08:22727475..22749048+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00045514g0005.1 protein AED:0.06 eAED:0.06 QI:140|1|0.87|1|0.71|0.87|8|0|334; (*GB) gi|356516297|ref|XP_003526832.1| (e_value=0.0) PREDICTED: developmentally-regulated GTP-binding protein 1-like [Glycine max];; (*SWP) sp|Q9Y295|DRG1_HUMAN (e_value=6e-157) Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1;; (*TAIR) AT4G39520.1 (e_value=0.0) | Symbols: | GTP-binding protein-related | chr4:18371329-18374000 REVERSE LENGTH=369;; (*ITAG) Solyc04g051830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50286084-50298122 transcript_region:SL2.40ch04:50286084..50298122- go_terms:GO:0008134 functional_description:"Developmentally regulated GTP binding protein 1 (AHRD V1 **-* A8WE95_PEA); contains Interpro domain(s) IPR004095 TGS "; GO:0008134 NbS00045514g0008.1 protein AED:0.41 eAED:0.41 QI:0|0.25|0.2|1|1|0.8|5|298|115; (*TAIR) AT4G39520.1 (e_value=7e-15) | Symbols: | GTP-binding protein-related | chr4:18371329-18374000 REVERSE LENGTH=369;; (*ITAG) Solyc04g051830.2.1 (e_value=7e-15) genomic_reference:SL2.40ch04 gene_region:50286084-50298122 transcript_region:SL2.40ch04:50286084..50298122- go_terms:GO:0008134 functional_description:"Developmentally regulated GTP binding protein 1 (AHRD V1 **-* A8WE95_PEA); contains Interpro domain(s) IPR004095 TGS "; GO:0008134 NbS00045514g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|117; (*GB) gi|388513069|gb|AFK44596.1| (e_value=4e-44) unknown [Lotus japonicus];; (*TAIR) AT5G09960.1 (e_value=6e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112;; (*ITAG) Solyc04g051820.2.1 (e_value=9e-54) genomic_reference:SL2.40ch04 gene_region:50279334-50282705 transcript_region:SL2.40ch04:50279334..50282705+ functional_description:"Os03g0169900 protein (Fragment) (AHRD V1 ***- Q0DUS0_ORYSJ)"; NbS00006489g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|1|0.66|3|0|76; (*GB) gi|297845926|ref|XP_002890844.1| (e_value=6e-35) hypothetical protein ARALYDRAFT_890536 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G29990.1 (e_value=4e-36) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=8e-40) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631,GO:0051087 NbS00006489g0012.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|316; (*GB) gi|224115344|ref|XP_002332173.1| (e_value=1e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|P93194|RPK1_IPONI (e_value=6e-20) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G07390.3 (e_value=1e-39) | Symbols: AtRLP1, RLP1 | receptor like protein 1 | chr1:2269893-2274654 FORWARD LENGTH=1083;; (*ITAG) Solyc04g014400.2.1 (e_value=8e-127) genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00006489g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0.5|2|0|318; (*GB) gi|356567128|ref|XP_003551773.1| (e_value=2e-47) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Glycine max];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=2e-15) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT1G74170.1 (e_value=3e-33) | Symbols: AtRLP13, RLP13 | receptor like protein 13 | chr1:27891555-27895441 REVERSE LENGTH=1000;; (*ITAG) Solyc08g016270.1.1 (e_value=7e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:7042139-7046369 transcript_region:SL2.40ch08:7042139..7046369- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00003441g0010.1 protein AED:0.15 eAED:0.16 QI:212|0.72|0.63|0.94|0.77|0.68|19|468|1328; (*GB) gi|255568046|ref|XP_002525000.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G22450.1 (e_value=6e-148) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7437145-7442856 REVERSE LENGTH=1154;; (*ITAG) Solyc11g006960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1458731-1469368 transcript_region:SL2.40ch11:1458731..1469368- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00003441g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|224110182|ref|XP_002315439.1| (e_value=6e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SR72|GL32_ARATH (e_value=7e-78) Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1;; (*TAIR) AT3G10080.1 (e_value=5e-79) | Symbols: | RmlC-like cupins superfamily protein | chr3:3107476-3108159 REVERSE LENGTH=227;; (*ITAG) Solyc11g006980.1.1 (e_value=3e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1485191-1485829 transcript_region:SL2.40ch11:1485191..1485829+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 18 (AHRD V1 ***- C7S8D2_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00003441g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.4|1|0|0|5|684|185; (*GB) gi|147769861|emb|CAN74465.1| (e_value=8e-83) hypothetical protein VITISV_004134 [Vitis vinifera];; (*TAIR) AT3G54260.1 (e_value=6e-69) | Symbols: TBL36 | TRICHOME BIREFRINGENCE-LIKE 36 | chr3:20085097-20086745 REVERSE LENGTH=379;; (*ITAG) Solyc11g006990.1.1 (e_value=1e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1487075-1489640 transcript_region:SL2.40ch11:1487075..1489640- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00033217g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.71|1|0.5|0.57|7|366|301; (*GB) gi|77745477|gb|ABB02637.1| (e_value=9e-167) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=1e-25) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1;; (*TAIR) AT3G25160.1 (e_value=7e-120) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc09g059270.2.1 (e_value=7e-166) genomic_reference:SL2.40ch09 gene_region:49758568-49762279 transcript_region:SL2.40ch09:49758568..49762279+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00020619g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0|2|0|156; (*ITAG) Solyc08g005180.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:120001-121047 transcript_region:SL2.40ch08:120001..121047- go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin L (AHRD V1 ***- D6WR25_TRICA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00020619g0007.1 protein AED:0.31 eAED:0.31 QI:136|1|1|1|0.5|0.66|3|523|115; (*GB) gi|388498604|gb|AFK37368.1| (e_value=8e-70) unknown [Lotus japonicus];; (*SWP) sp|P81748|MIFH_TRITR (e_value=3e-24) Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2;; (*TAIR) AT5G01650.1 (e_value=9e-72) | Symbols: | Tautomerase/MIF superfamily protein | chr5:242734-244033 REVERSE LENGTH=115;; (*ITAG) Solyc10g076350.1.1 (e_value=5e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58620196-58623968 transcript_region:SL2.40ch10:58620196..58623968+ functional_description:"Macrophage migration inhibitory factor family protein (AHRD V1 ***- D7M6G9_ARALY); contains Interpro domain(s) IPR001398 Macrophage migration inhibitory factor "; NbS00031977g0007.1 protein AED:0.23 eAED:0.25 QI:0|0.83|0.42|1|0.66|0.42|7|0|816; (*GB) gi|225444746|ref|XP_002278147.1| (e_value=7e-154) PREDICTED: uncharacterized protein LOC100244043 [Vitis vinifera];; (*SWP) sp|Q8LB33|FB330_ARATH (e_value=4e-15) F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1;; (*TAIR) AT2G06040.1 (e_value=1e-142) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762;; (*ITAG) Solyc08g061650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46484175-46497071 transcript_region:SL2.40ch08:46484175..46497071- functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00031977g0006.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|59 NbS00031977g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|225429684|ref|XP_002280018.1| (e_value=3e-31) PREDICTED: uncharacterized protein LOC100247309 [Vitis vinifera];; (*ITAG) Solyc08g061640.1.1 (e_value=7e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:46483086-46483613 transcript_region:SL2.40ch08:46483086..46483613+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031977g0010.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0.33|1|0.5|0.66|3|0|236; (*GB) gi|359476279|ref|XP_002280034.2| (e_value=2e-80) PREDICTED: uncharacterized protein LOC100242172 [Vitis vinifera];; (*TAIR) AT5G21920.2 (e_value=2e-64) | Symbols: YLMG2 | YGGT family protein | chr5:7241350-7242765 REVERSE LENGTH=238;; (*ITAG) Solyc08g061630.2.1 (e_value=3e-129) genomic_reference:SL2.40ch08 gene_region:46479361-46482474 transcript_region:SL2.40ch08:46479361..46482474+ go_terms:GO:0016020 functional_description:"Conserved hypothetical membrane protein (AHRD V1 *--- Q7V1G3_PROMP); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00025513g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.25|0.2|1|0|0|5|0|728; (*GB) gi|225439731|ref|XP_002272943.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LFF1|PP281_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1;; (*TAIR) AT3G53700.1 (e_value=0.0) | Symbols: MEE40 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:19900303-19902567 FORWARD LENGTH=754;; (*ITAG) Solyc09g010450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3813996-3816296 transcript_region:SL2.40ch09:3813996..3816296+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025513g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|105; (*GB) gi|170773914|gb|ACB32233.1| (e_value=1e-49) actin-depolymerizing factor 1 [Solanum chacoense];; (*SWP) sp|Q9FVI2|ADF1_PETHY (e_value=2e-50) Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1;; (*TAIR) AT5G59890.1 (e_value=3e-47) | Symbols: ADF4, ATADF4 | actin depolymerizing factor 4 | chr5:24122545-24123596 FORWARD LENGTH=139;; (*ITAG) Solyc09g010440.2.1 (e_value=1e-51) genomic_reference:SL2.40ch09 gene_region:3809998-3813024 transcript_region:SL2.40ch09:3809998..3813024+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 1 (AHRD V1 **** B2CM17_SOLCH); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00043465g0006.1 protein AED:0.20 eAED:0.20 QI:247|0.75|0.88|1|0.5|0.55|9|372|783; (*GB) gi|356533336|ref|XP_003535221.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100789823 [Glycine max];; (*SWP) sp|Q9M2S6|SDIR1_ARATH (e_value=1e-16) E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1;; (*TAIR) AT1G04790.1 (e_value=2e-44) | Symbols: | RING/U-box superfamily protein | chr1:1345469-1348143 FORWARD LENGTH=634;; (*ITAG) Solyc09g091480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66095886-66102841 transcript_region:SL2.40ch09:66095886..66102841- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00043465g0008.1 protein AED:0.26 eAED:0.26 QI:371|0.5|0.33|0.66|0|0.66|3|35|83 NbS00043465g0007.1 protein AED:0.26 eAED:0.28 QI:249|0.84|0.78|1|0.92|1|14|210|494; (*GB) gi|257815409|gb|ACV70033.1| (e_value=0.0) 3-ketoacyl CoA thiolase 2 [Petunia x hybrida];; (*SWP) sp|Q56WD9|THIK2_ARATH (e_value=0.0) 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2;; (*TAIR) AT2G33150.1 (e_value=0.0) | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacyl-CoA thiolase 3 | chr2:14047814-14050983 REVERSE LENGTH=462;; (*ITAG) Solyc09g091470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66090647-66095664 transcript_region:SL2.40ch09:66090647..66095664+ go_terms:GO:0003985 functional_description:"3-ketoacyl CoA thiolase 2 (AHRD V1 **** C8YNG7_PETHY); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00056553g0003.1 protein AED:0.34 eAED:0.34 QI:136|1|1|1|0.75|0.6|5|341|151; (*GB) gi|225462560|ref|XP_002267649.1| (e_value=3e-84) PREDICTED: probable prefoldin subunit 5 [Vitis vinifera];; (*SWP) sp|P57742|PFD5_ARATH (e_value=4e-78) Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1;; (*TAIR) AT5G23290.1 (e_value=3e-79) | Symbols: PFD5 | prefoldin 5 | chr5:7846144-7847428 FORWARD LENGTH=151;; (*ITAG) Solyc01g008270.2.1 (e_value=1e-96) genomic_reference:SL2.40ch01 gene_region:2385892-2400050 transcript_region:SL2.40ch01:2385892..2400050+ go_terms:GO:0015631,GO:0003714 functional_description:"Prefoldin subunit 5 (AHRD V1 ***- B6TVU2_MAIZE); contains Interpro domain(s) IPR011599 Prefoldin alpha subunit "; GO:0015631,GO:0003714 NbC26232797g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=7e-82) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=5e-77) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=7e-51) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=1e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00005608g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.85|1|0.55|0.66|21|183|885; (*GB) gi|359481940|ref|XP_002264975.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248757 [Vitis vinifera];; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=2e-15) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1;; (*TAIR) AT2G36720.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15393447-15399189 FORWARD LENGTH=1007;; (*ITAG) Solyc09g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2003633-2012302 transcript_region:SL2.40ch09:2003633..2012302- go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--* B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00005608g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|1|1|0.66|3|0|176; (*GB) gi|356570790|ref|XP_003553567.1| (e_value=3e-84) PREDICTED: probable pectinesterase 15-like [Glycine max];; (*SWP) sp|Q9ZQA3|PME15_ARATH (e_value=3e-77) Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1;; (*TAIR) AT2G36710.1 (e_value=2e-78) | Symbols: | Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407;; (*ITAG) Solyc07g043240.2.1 (e_value=2e-73) genomic_reference:SL2.40ch07 gene_region:54205379-54208245 transcript_region:SL2.40ch07:54205379..54208245- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S4Z6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00023853g0010.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0.66|0.5|4|436|269; (*GB) gi|225431415|ref|XP_002272863.1| (e_value=2e-110) PREDICTED: WUSCHEL-related homeobox 13-like [Vitis vinifera];; (*SWP) sp|Q5QMM3|WOX8_ORYSJ (e_value=8e-87) WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1;; (*TAIR) AT4G35550.1 (e_value=5e-82) | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268;; (*ITAG) Solyc02g082670.2.1 (e_value=8e-167) genomic_reference:SL2.40ch02 gene_region:40892965-40895886 transcript_region:SL2.40ch02:40892965..40895886- go_terms:GO:0003677 functional_description:"WUSCHEL-related homeobox 14 (AHRD V1 ***- B6T910_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677 NbS00023853g0012.1 protein AED:0.21 eAED:0.21 QI:314|0.95|0.91|1|0.52|0.5|24|1257|924; (*GB) gi|296088648|emb|CBI37639.3| (e_value=2e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UHC1|MLH3_HUMAN (e_value=2e-41) DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3;; (*TAIR) AT4G35520.1 (e_value=8e-96) | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | chr4:16865488-16871527 FORWARD LENGTH=1169;; (*ITAG) Solyc02g082660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40880286-40891972 transcript_region:SL2.40ch02:40880286..40891972+ go_terms:GO:0005524,GO:0006298 functional_description:"DNA mismatch repair protein mutL (AHRD V1 *-*- C7IG10_9CLOT); contains Interpro domain(s) IPR002099 DNA mismatch repair protein "; GO:0005524,GO:0006298 NbS00042326g0009.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.6|0.8|0.88|0.8|10|0|358; (*GB) gi|225432356|ref|XP_002275310.1| (e_value=0.0) PREDICTED: anaphase-promoting complex subunit 7 [Vitis vinifera];; (*SWP) sp|Q8VY89|APC7_ARATH (e_value=4e-160) Anaphase-promoting complex subunit 7 OS=Arabidopsis thaliana GN=APC7 PE=2 SV=1;; (*TAIR) AT2G39090.1 (e_value=3e-161) | Symbols: APC7, AtAPC7 | tetratricopeptide repeat (TPR)-containing protein | chr2:16312771-16317233 REVERSE LENGTH=558;; (*ITAG) Solyc01g067490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68580146-68595715 transcript_region:SL2.40ch01:68580146..68595715- go_terms:GO:0005488 functional_description:"Anaphase-promoting complex subunit 7 (AHRD V1 **-- C0H9K6_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00042326g0008.1 protein AED:0.28 eAED:0.33 QI:0|0.5|0.2|1|0.75|0.6|5|0|333; (*GB) gi|147789459|emb|CAN77820.1| (e_value=7e-97) hypothetical protein VITISV_043441 [Vitis vinifera];; (*TAIR) AT5G18590.2 (e_value=1e-74) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:6178516-6182186 REVERSE LENGTH=708;; (*ITAG) Solyc01g067480.2.1 (e_value=8e-136) genomic_reference:SL2.40ch01 gene_region:68566952-68579332 transcript_region:SL2.40ch01:68566952..68579332+ go_terms:GO:0000062 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0000062 NbS00026766g0006.1 protein AED:0.44 eAED:0.62 QI:196|0.33|0.5|1|0|0.25|4|0|113; (*GB) gi|118483904|gb|ABK93842.1| (e_value=3e-28) unknown [Populus trichocarpa];; (*ITAG) Solyc12g099570.1.1 (e_value=2e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:65017075-65019085 transcript_region:SL2.40ch12:65017075..65019085+ functional_description:"Heat shock factor binding protein 2 (AHRD V1 ***- Q6ST18_MAIZE); contains Interpro domain(s) IPR009643 Heat shock factor binding 1 "; NbS00026766g0002.1 protein AED:0.15 eAED:0.42 QI:0|0|0|1|1|1|2|0|117; (*ITAG) Solyc01g067900.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:69313981-69314853 transcript_region:SL2.40ch01:69313981..69314853+ functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q84UC8_9ROSI); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; NbS00012684g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|252; (*GB) gi|224120338|ref|XP_002331023.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=7e-19) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=6e-20) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc01g005200.1.1 (e_value=2e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:154250-155140 transcript_region:SL2.40ch01:154250..155140+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M6E6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00046370g0004.1 protein AED:0.10 eAED:0.10 QI:216|0.88|0.8|1|0.88|0.8|10|0|750; (*GB) gi|239819394|gb|ACS28251.1| (e_value=0.0) cell division control protein [Nicotiana glutinosa];; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00010707g0016.1 protein AED:0.36 eAED:0.38 QI:0|0.81|0.75|1|0.81|0.75|12|450|498; (*GB) gi|224102873|ref|XP_002312837.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q969V3|NCLN_HUMAN (e_value=2e-47) Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2;; (*TAIR) AT3G44330.1 (e_value=0.0) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbS00010707g0015.1 protein AED:0.46 eAED:0.54 QI:0|0.16|0.42|1|0.16|0.28|7|0|174; (*GB) gi|171451996|dbj|BAG15862.1| (e_value=2e-45) hypothetical protein [Bruguiera gymnorhiza];; (*TAIR) AT3G44330.1 (e_value=3e-45) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=2e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbS00010707g0014.1 protein AED:0.08 eAED:0.08 QI:218|1|0.88|1|1|1|9|0|408; (*GB) gi|224132286|ref|XP_002328231.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZE28|Y120_RICPR (e_value=1e-15) Uncharacterized protein RP120 OS=Rickettsia prowazekii (strain Madrid E) GN=RP120 PE=4 SV=1;; (*TAIR) AT5G22350.1 (e_value=0.0) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00010707g0003.1 protein AED:0.30 eAED:0.30 QI:562|0.87|0.88|1|0.75|0.66|9|224|534; (*GB) gi|255565701|ref|XP_002523840.1| (e_value=5e-140) expressed protein, putative [Ricinus communis];; (*SWP) sp|Q2YDU3|OTUD5_RAT (e_value=1e-40) OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2;; (*TAIR) AT2G27350.6 (e_value=5e-114) | Symbols: | OTU-like cysteine protease family protein | chr2:11699780-11702363 REVERSE LENGTH=506;; (*ITAG) Solyc11g068660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50382777-50387599 transcript_region:SL2.40ch11:50382777..50387599+ functional_description:"OTU domain containing protein (AHRD V1 *-*- D3BI79_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00001569g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|91; (*GB) gi|255563590|ref|XP_002522797.1| (e_value=1e-31) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=3e-16) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=2e-17) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=4e-47) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00001569g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|57014017|ref|YP_173488.1| (e_value=1e-47) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-49) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-45) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-50) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00001569g0013.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|57013958|ref|YP_173430.1| (e_value=6e-34) hypothetical protein NitaMp091 [Nicotiana tabacum]; NbS00001569g0012.1 protein AED:0.30 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|63 NbS00005393g0005.1 protein AED:0.52 eAED:0.84 QI:0|0|0|0.66|0|0|3|0|100 NbS00049724g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|314; (*GB) gi|20149241|gb|AAM12871.1|AF494088_1 (e_value=0.0) gibberellin 20-oxidase 2 [Nicotiana sylvestris];; (*SWP) sp|Q39110|GAOX1_ARATH (e_value=2e-114) Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2;; (*TAIR) AT4G25420.1 (e_value=1e-115) | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12990982-12992409 REVERSE LENGTH=377;; (*ITAG) Solyc03g006880.2.1 (e_value=2e-147) genomic_reference:SL2.40ch03 gene_region:1408533-1410323 transcript_region:SL2.40ch03:1408533..1410323+ go_terms:GO:0045544 functional_description:"Gibberellin 20-oxidase-1 (AHRD V1 **** Q9ZPP4_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00033200g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|350539934|ref|NP_001234581.1| (e_value=6e-106) TCP transcription factor 14 [Solanum lycopersicum];; (*SWP) sp|Q9FMX2|TCP7_ARATH (e_value=2e-73) Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1;; (*TAIR) AT5G23280.1 (e_value=2e-74) | Symbols: | TCP family transcription factor | chr5:7843017-7843769 FORWARD LENGTH=250;; (*ITAG) Solyc04g009180.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2687517-2688317 transcript_region:SL2.40ch04:2687517..2688317+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00001844g0006.1 protein AED:0.20 eAED:0.20 QI:210|0.63|0.83|1|0.81|0.75|12|240|430; (*GB) gi|255556588|ref|XP_002519328.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8RWC9|CIPK1_ARATH (e_value=7e-172) CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2;; (*TAIR) AT3G17510.1 (e_value=5e-173) | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein kinase 1 | chr3:5989309-5992627 REVERSE LENGTH=444;; (*ITAG) Solyc12g098910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64612490-64619100 transcript_region:SL2.40ch12:64612490..64619100+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 1 (AHRD V1 ***- A0MNI9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00001844g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|597; (*GB) gi|30268668|dbj|BAC76005.1| (e_value=0.0) RelA-SpoT like protein RSH4 [Nicotiana tabacum];; (*SWP) sp|Q8CS97|RELA_STAES (e_value=6e-35) GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1;; (*TAIR) AT3G17470.1 (e_value=0.0) | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot homolog | chr3:5979868-5981968 FORWARD LENGTH=583;; (*ITAG) Solyc12g098920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64620351-64623818 transcript_region:SL2.40ch12:64620351..64623818- go_terms:GO:0015969,GO:0005509 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--- Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0005509 NbS00001844g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|1|0.25|0|5|0|291; (*GB) gi|225432171|ref|XP_002267959.1| (e_value=7e-161) PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9P6P9|PDK_SCHPO (e_value=4e-60) [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.11c PE=2 SV=1;; (*TAIR) AT3G06483.1 (e_value=6e-150) | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366;; (*ITAG) Solyc12g098930.1.1 (e_value=6e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64624710-64626927 transcript_region:SL2.40ch12:64624710..64626927- go_terms:GO:0005524,GO:0018106 functional_description:"Pyruvate dehydrogenase kinase (AHRD V1 ***- Q700B0_CICAR); contains Interpro domain(s) IPR018955 Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial "; GO:0005524,GO:0018106 NbS00008229g0011.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|252; (*GB) gi|193527448|gb|ACF19789.1| (e_value=6e-17) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=4e-52) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbC25058979g0002.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|255540295|ref|XP_002511212.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G07900.1 (e_value=1e-32) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00045122g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|359481402|ref|XP_003632616.1| (e_value=3e-24) PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera];; (*TAIR) AT2G28085.1 (e_value=2e-18) | Symbols: | SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124;; (*ITAG) Solyc10g084020.1.1 (e_value=5e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63012410-63012805 transcript_region:SL2.40ch10:63012410..63012805+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q2HTF3_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00011647g0008.1 protein AED:0.10 eAED:0.10 QI:185|1|1|1|0.75|0.77|9|327|376; (*GB) gi|359473854|ref|XP_002269010.2| (e_value=3e-156) PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera];; (*SWP) sp|Q4P7F2|FES1_USTMA (e_value=7e-19) Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1;; (*TAIR) AT3G51980.1 (e_value=1e-132) | Symbols: | ARM repeat superfamily protein | chr3:19285811-19287502 REVERSE LENGTH=382;; (*ITAG) Solyc04g009320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2766840-2771952 transcript_region:SL2.40ch04:2766840..2771952+ go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- B2W0L6_PYRTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00011647g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.62|0.77|0.77|1|1|9|163|476; (*GB) gi|225425084|ref|XP_002273586.1| (e_value=2e-132) PREDICTED: uncharacterized protein LOC100249627 [Vitis vinifera];; (*SWP) sp|Q92804|RBP56_HUMAN (e_value=1e-21) TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1;; (*TAIR) AT1G50300.1 (e_value=2e-109) | Symbols: TAF15 | TBP-associated factor 15 | chr1:18628818-18631662 REVERSE LENGTH=372;; (*ITAG) Solyc11g040050.1.1 (e_value=4e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28386181-28389979 transcript_region:SL2.40ch11:28386181..28389979- go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B8C201_THAPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003723 NbS00011647g0012.1 protein AED:0.29 eAED:0.29 QI:106|0.66|1|1|0.33|0.25|4|413|126; (*GB) gi|388521611|gb|AFK48867.1| (e_value=5e-34) unknown [Lotus japonicus];; (*TAIR) AT5G47870.1 (e_value=8e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19384555-19385808 REVERSE LENGTH=199;; (*ITAG) Solyc11g040110.1.1 (e_value=6e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28511470-28516022 transcript_region:SL2.40ch11:28511470..28516022- functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- B6ST86_MAIZE)"; NbS00040618g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.66|0.77|0.87|0.77|9|396|344; (*GB) gi|224136700|ref|XP_002326923.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT08|PSDE_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1;; (*TAIR) AT5G23540.1 (e_value=0.0) | Symbols: | Mov34/MPN/PAD-1 family protein | chr5:7937772-7939339 FORWARD LENGTH=308;; (*ITAG) Solyc04g079200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61339502-61344701 transcript_region:SL2.40ch04:61339502..61344701- go_terms:GO:0070628 functional_description:"26S proteasome regulatory subunit (AHRD V1 **** A8HPA0_CHLRE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0070628 NbS00028533g0001.1 protein AED:0.33 eAED:0.62 QI:0|0|0|1|1|1|2|0|77; (*GB) gi|730558|sp|P41098.1|RL34_TOBAC (e_value=9e-22) RecName: Full=60S ribosomal protein L34;; (*SWP) sp|P41098|RL34_TOBAC (e_value=3e-23) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G26880.1 (e_value=5e-22) | Symbols: | Ribosomal protein L34e superfamily protein | chr1:9315640-9316681 REVERSE LENGTH=120;; (*ITAG) Solyc02g087930.2.1 (e_value=9e-24) genomic_reference:SL2.40ch02 gene_region:44752863-44756574 transcript_region:SL2.40ch02:44752863..44756574- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6T098_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00003555g0009.1 protein AED:0.20 eAED:0.22 QI:72|0.5|0.8|1|0.5|0.8|5|296|280; (*GB) gi|225433709|ref|XP_002268298.1| (e_value=5e-131) PREDICTED: pirin-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=4e-121) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G43120.1 (e_value=7e-108) | Symbols: | RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321;; (*ITAG) Solyc09g098180.2.1 (e_value=5e-175) genomic_reference:SL2.40ch09 gene_region:67322241-67325283 transcript_region:SL2.40ch09:67322241..67325283- go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00003555g0010.1 protein AED:0.29 eAED:0.29 QI:173|0.66|0.5|0.9|0.33|0.3|10|0|453; (*GB) gi|356569121|ref|XP_003552754.1| (e_value=5e-131) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*SWP) sp|Q5PQL3|SPP2B_RAT (e_value=9e-30) Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1;; (*TAIR) AT2G43070.1 (e_value=1e-110) | Symbols: SPPL3, ATSPPL3 | SIGNAL PEPTIDE PEPTIDASE-LIKE 3 | chr2:17911233-17914776 REVERSE LENGTH=540;; (*ITAG) Solyc12g098670.1.1 (e_value=3e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64437938-64445800 transcript_region:SL2.40ch12:64437938..64445800+ go_terms:GO:0016021 functional_description:"Signal peptide peptidase (AHRD V1 ***- Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00003555g0011.1 protein AED:0.35 eAED:0.35 QI:130|1|1|1|1|1|2|207|218; (*GB) gi|623584|gb|AAA74116.1| (e_value=8e-153) putative, partial [Nicotiana tabacum];; (*SWP) sp|Q9SIP0|RAA5D_ARATH (e_value=2e-128) Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2 SV=1;; (*TAIR) AT1G05810.1 (e_value=4e-129) | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E | RAB GTPase homolog A5E | chr1:1748314-1749350 FORWARD LENGTH=261;; (*ITAG) Solyc09g098170.2.1 (e_value=9e-154) genomic_reference:SL2.40ch09 gene_region:67317558-67321196 transcript_region:SL2.40ch09:67317558..67321196+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00014462g0005.1 protein AED:0.29 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|307135946|gb|ADN33807.1| (e_value=2e-23) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00014462g0015.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|355; (*GB) gi|30013665|gb|AAP03875.1| (e_value=0.0) putative chloroplast thiazole biosynthetic protein [Nicotiana tabacum];; (*SWP) sp|F6H9A9|THI41_VITVI (e_value=0.0) Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera GN=THI1-1 PE=3 SV=1;; (*TAIR) AT5G54770.1 (e_value=0.0) | Symbols: THI1, TZ, THI4 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) | chr5:22246634-22247891 FORWARD LENGTH=349;; (*ITAG) Solyc07g064160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63644226-63646402 transcript_region:SL2.40ch07:63644226..63646402+ go_terms:GO:0008270,GO:0042803 functional_description:"Thiazole biosynthetic enzyme (AHRD V1 ***- D6N3H1_GOSHI); contains Interpro domain(s) IPR002922 Thiamine biosynthesis Thi4 protein "; GO:0008270,GO:0042803 NbS00014462g0013.1 protein AED:0.09 eAED:0.12 QI:0|0|0.5|1|1|1|2|125|270; (*GB) gi|225448345|ref|XP_002266989.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100248425 [Vitis vinifera];; (*TAIR) AT2G40815.1 (e_value=7e-37) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:17034736-17036110 REVERSE LENGTH=367;; (*ITAG) Solyc03g095300.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:49769988-49771131 transcript_region:SL2.40ch03:49769988..49771131- functional_description:"Proline-rich family protein (AHRD V1 **-- D7LFU9_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00014462g0014.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|1|1|1|3|0|166; (*GB) gi|297736647|emb|CBI25518.3| (e_value=7e-67) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10840.1 (e_value=7e-63) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:3391207-3393281 REVERSE LENGTH=466;; (*ITAG) Solyc03g095290.2.1 (e_value=3e-84) genomic_reference:SL2.40ch03 gene_region:49762383-49769731 transcript_region:SL2.40ch03:49762383..49769731+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7L9R5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00002634g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|110; (*ITAG) Solyc06g011460.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00002634g0006.1 protein AED:0.25 eAED:0.25 QI:238|1|1|1|0.66|0.7|10|134|789; (*GB) gi|225448649|ref|XP_002279573.1| (e_value=0.0) PREDICTED: potassium transporter 2 [Vitis vinifera];; (*SWP) sp|O22881|POT2_ARATH (e_value=0.0) Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2;; (*TAIR) AT2G40540.2 (e_value=0.0) | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | potassium transporter 2 | chr2:16931445-16934516 FORWARD LENGTH=794;; (*ITAG) Solyc06g050170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29143972-29153122 transcript_region:SL2.40ch06:29143972..29153122+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T761_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00047753g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|0|2|0|115; (*GB) gi|306481964|dbj|BAJ17086.1| (e_value=9e-37) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Solanum sp. SH-2010];; (*SWP) sp|Q31951|RBL_CAPBA (e_value=3e-38) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Capsicum baccatum GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=2e-33) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00061898g0006.1 protein AED:0.24 eAED:0.29 QI:351|0.27|0.25|1|0.18|0.25|12|194|448; (*GB) gi|294440430|gb|ADE74632.1| (e_value=1e-102) aspartic protease 1 [Nicotiana tabacum];; (*SWP) sp|P42211|ASPRX_ORYSJ (e_value=4e-85) Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=2e-84) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc09g082760.2.1 (e_value=2e-148) genomic_reference:SL2.40ch09 gene_region:63837132-63841454 transcript_region:SL2.40ch09:63837132..63841454+ go_terms:GO:0004190 functional_description:"Aspartic proteinase 2 (AHRD V1 **-* Q948P0_SOYBN); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00023580g0004.1 protein AED:0.15 eAED:0.15 QI:64|1|1|1|0.5|0.4|5|530|262; (*GB) gi|296088822|emb|CBI38280.3| (e_value=6e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M8J3|FRS7_ARATH (e_value=1e-21) Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1;; (*TAIR) AT3G07500.1 (e_value=3e-82) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr3:2392387-2393709 FORWARD LENGTH=217;; (*ITAG) Solyc09g057870.2.1 (e_value=1e-93) genomic_reference:SL2.40ch09 gene_region:47160646-47162750 transcript_region:SL2.40ch09:47160646..47162750- functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00003110g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|28|354; (*GB) gi|20334373|gb|AAM19207.1|AF493232_1 (e_value=1e-151) cysteine protease [Solanum pimpinellifolium];; (*SWP) sp|O23791|BROM1_ANACO (e_value=2e-78) Fruit bromelain OS=Ananas comosus PE=1 SV=1;; (*TAIR) AT3G49340.1 (e_value=1e-86) | Symbols: | Cysteine proteinases superfamily protein | chr3:18293347-18294577 REVERSE LENGTH=341;; (*ITAG) Solyc02g076980.2.1 (e_value=9e-154) genomic_reference:SL2.40ch02 gene_region:36644114-36645492 transcript_region:SL2.40ch02:36644114..36645492+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0004197 NbS00003110g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|294; (*GB) gi|148611499|gb|ABQ95989.1| (e_value=0.0) phospholipase A1 [Capsicum annuum];; (*SWP) sp|O49523|DSEL_ARATH (e_value=7e-107) Phospholipase A1-IIgamma OS=Arabidopsis thaliana GN=DSEL PE=1 SV=1;; (*TAIR) AT4G18550.1 (e_value=5e-108) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36656468-36657997 transcript_region:SL2.40ch02:36656468..36657997+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00015878g0008.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|575; (*GB) gi|225435353|ref|XP_002285265.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100233041 isoform 1 [Vitis vinifera];; (*SWP) sp|Q55874|Y103_SYNY3 (e_value=1e-15) Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=4 SV=1;; (*TAIR) AT5G60710.1 (e_value=0.0) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc11g069600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51315413-51320614 transcript_region:SL2.40ch11:51315413..51320614- go_terms:GO:0008270 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H4 (AHRD V1 *--- ITIH4_HUMAN); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0008270 NbS00015878g0009.1 protein AED:0.27 eAED:0.29 QI:0|0.71|0.12|1|1|1|8|0|1318; (*GB) gi|297746281|emb|CBI16337.3| (e_value=1e-44) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M658|MOM1_ARATH (e_value=4e-24) Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1;; (*TAIR) AT1G08060.2 (e_value=3e-25) | Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001;; (*ITAG) Solyc11g069610.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51330374-51341104 transcript_region:SL2.40ch11:51330374..51341104- functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N465_POPTR)"; NbS00015878g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|297746279|emb|CBI16335.3| (e_value=9e-83) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G60710.1 (e_value=4e-61) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc11g069600.1.1 (e_value=5e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51315413-51320614 transcript_region:SL2.40ch11:51315413..51320614- go_terms:GO:0008270 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H4 (AHRD V1 *--- ITIH4_HUMAN); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0008270 NbS00015878g0014.1 protein AED:0.73 eAED:0.82 QI:0|0|0|0.33|0|0.66|3|0|71 NbS00020662g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|130; (*GB) gi|23343581|emb|CAC88762.1| (e_value=9e-77) serine acetyltransferase 1 [Nicotiana tabacum];; (*SWP) sp|Q39218|SAT3_ARATH (e_value=2e-66) Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3;; (*TAIR) AT3G13110.1 (e_value=2e-67) | Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M, SERAT2;2 | serine acetyltransferase 2;2 | chr3:4214939-4216114 REVERSE LENGTH=391;; (*ITAG) Solyc10g006040.1.1 (e_value=3e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:784572-785669 transcript_region:SL2.40ch10:784572..785669+ go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00022642g0001.1 protein AED:0.06 eAED:0.06 QI:206|0.8|0.66|1|1|1|6|404|323; (*GB) gi|359480799|ref|XP_002277966.2| (e_value=2e-31) PREDICTED: uncharacterized protein LOC100245665 [Vitis vinifera];; (*ITAG) Solyc02g093280.2.1 (e_value=5e-124) genomic_reference:SL2.40ch02 gene_region:48767476-48769813 transcript_region:SL2.40ch02:48767476..48769813+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor EB (AHRD V1 *-*- TFEB_HUMAN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00026600g0011.1 protein AED:0.23 eAED:0.23 QI:112|1|0.33|1|0.8|0.66|6|0|172; (*GB) gi|388501268|gb|AFK38700.1| (e_value=1e-77) unknown [Lotus japonicus];; (*SWP) sp|Q9LXB4|Y5620_ARATH (e_value=3e-72) Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=2 SV=1;; (*TAIR) AT5G10620.1 (e_value=2e-73) | Symbols: | methyltransferases | chr5:3355466-3356615 REVERSE LENGTH=193;; (*ITAG) Solyc12g096330.1.1 (e_value=1e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63639472-63640442 transcript_region:SL2.40ch12:63639472..63640442- go_terms:GO:0005737 functional_description:"Ribosomal RNA large subunit methyltransferase H (AHRD V1 ***- A3UBP0_CROAH); contains Interpro domain(s) IPR003742 SPOUT methyltransferase, predicted "; GO:0005737 NbS00026600g0003.1 protein AED:0.25 eAED:0.26 QI:0|0.8|0.83|1|1|1|6|0|206; (*GB) gi|82623379|gb|ABB87104.1| (e_value=2e-117) ChaC-like family protein-like [Solanum tuberosum];; (*SWP) sp|Q641Z5|CHAC2_RAT (e_value=4e-31) Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1;; (*TAIR) AT5G26220.1 (e_value=4e-101) | Symbols: | ChaC-like family protein | chr5:9163178-9164613 REVERSE LENGTH=216;; (*ITAG) Solyc12g096320.1.1 (e_value=6e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63636701-63638486 transcript_region:SL2.40ch12:63636701..63638486+ go_terms:GO:0005515 functional_description:"ChaC cation transport regulator-like 1 (AHRD V1 ***- A8KBI8_DANRE); contains Interpro domain(s) IPR006840 ChaC-like protein "; GO:0005515 NbS00018316g0001.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|509; (*GB) gi|392465167|dbj|BAM24707.1| (e_value=0.0) Heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc09g010630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3965253-3968837 transcript_region:SL2.40ch09:3965253..3968837+ go_terms:GO:0051082 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbS00024004g0011.1 protein AED:0.17 eAED:0.17 QI:279|0.91|0.84|1|0.83|0.69|13|0|635; (*GB) gi|6685536|sp|P56821.1|EIF3B_TOBAC (e_value=0.0) RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110;; (*SWP) sp|P56821|EIF3B_TOBAC (e_value=0.0) Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1;; (*TAIR) AT5G27640.1 (e_value=0.0) | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712;; (*ITAG) Solyc01g088370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74897598-74903074 transcript_region:SL2.40ch01:74897598..74903074+ go_terms:GO:0032947,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit B (AHRD V1 **** B2VZ72_PYRTR); contains Interpro domain(s) IPR011400 Translation initiation factor eIF-3b "; GO:0032947,GO:0003743 NbS00024004g0012.1 protein AED:0.24 eAED:0.24 QI:164|1|1|1|0.75|0.6|5|201|174; (*GB) gi|297734683|emb|CBI16734.3| (e_value=1e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6DFN1|NDUF3_XENTR (e_value=3e-17) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1;; (*TAIR) AT2G44525.1 (e_value=3e-93) | Symbols: | Protein of unknown function (DUF498/DUF598) | chr2:18382130-18383320 FORWARD LENGTH=170;; (*ITAG) Solyc01g088350.2.1 (e_value=3e-114) genomic_reference:SL2.40ch01 gene_region:74887317-74894024 transcript_region:SL2.40ch01:74887317..74894024+ go_terms:GO:0005515 functional_description:"NADH dehydrogenase (AHRD V1 *--- NDUF3_XENTR); contains Interpro domain(s) IPR007523 Protein of unknown function DUF498 "; GO:0005515 NbS00004715g0004.1 protein AED:0.27 eAED:0.27 QI:36|0.8|0.83|0.83|0|0|6|298|69 NbS00001619g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|301; (*GB) gi|225470571|ref|XP_002272174.1| (e_value=3e-128) PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-51) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G38030.1 (e_value=7e-115) | Symbols: | MATE efflux family protein | chr5:15171486-15175302 REVERSE LENGTH=498;; (*ITAG) Solyc05g013460.2.1 (e_value=4e-155) genomic_reference:SL2.40ch05 gene_region:6653147-6662740 transcript_region:SL2.40ch05:6653147..6662740+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00001619g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.25|0.2|0.8|0.75|0.8|5|0|294; (*GB) gi|225470567|ref|XP_002272662.1| (e_value=2e-103) PREDICTED: uncharacterized protein LOC100264929 [Vitis vinifera];; (*TAIR) AT3G26580.1 (e_value=4e-100) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9758933-9760349 FORWARD LENGTH=350;; (*ITAG) Solyc05g013480.2.1 (e_value=1e-138) genomic_reference:SL2.40ch05 gene_region:6685702-6691461 transcript_region:SL2.40ch05:6685702..6691461- functional_description:"ATP-dependent protease Clp ATPase subunit (AHRD V1 *--- B6STX8_MAIZE); contains Interpro domain(s) IPR019734 Tetratricopeptide repeat "; NbS00001619g0008.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.66|1|1|3|0|230; (*ITAG) Solyc09g059390.2.1 (e_value=4e-33) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00008860g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0.4|1|0.75|0.8|5|0|192; (*GB) gi|225447610|ref|XP_002273149.1| (e_value=2e-93) PREDICTED: N-acetyltransferase 9-like protein [Vitis vinifera];; (*SWP) sp|A7SLC8|NAT9_NEMVE (e_value=4e-56) N-acetyltransferase 9-like protein OS=Nematostella vectensis GN=nat9 PE=3 SV=1;; (*TAIR) AT2G04845.1 (e_value=2e-95) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:1702341-1703993 REVERSE LENGTH=218;; (*ITAG) Solyc05g041830.2.1 (e_value=5e-70) genomic_reference:SL2.40ch05 gene_region:52917391-52923023 transcript_region:SL2.40ch05:52917391..52923023+ functional_description:"N-acetyltransferase (AHRD V1 ***- B6TRH8_MAIZE)"; NbS00061212g0006.1 protein AED:0.08 eAED:0.10 QI:0|0.75|0.55|1|0.87|0.77|9|0|838; (*GB) gi|147858097|emb|CAN78862.1| (e_value=0.0) hypothetical protein VITISV_021538 [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=0.0) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT4G25160.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr4:12903360-12906669 REVERSE LENGTH=835;; (*ITAG) Solyc05g051610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61127063-61130585 transcript_region:SL2.40ch05:61127063..61130585- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00004680g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|0|0.5|2|0|317; (*ITAG) Solyc01g098730.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:80929022-80929971 transcript_region:SL2.40ch01:80929022..80929971- functional_description:"Unknown Protein (AHRD V1)"; NbS00004680g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|224125338|ref|XP_002319561.1| (e_value=4e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=1e-57) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=8e-59) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=4e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00060037g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|92; (*GB) gi|358248428|ref|NP_001240136.1| (e_value=4e-49) expansin-A1-like precursor [Glycine max];; (*SWP) sp|Q9C554|EXPA1_ARATH (e_value=2e-46) Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1;; (*TAIR) AT1G69530.5 (e_value=1e-47) | Symbols: EXPA1 | expansin A1 | chr1:26142034-26143200 FORWARD LENGTH=245;; (*ITAG) Solyc05g007830.2.1 (e_value=4e-47) genomic_reference:SL2.40ch05 gene_region:2281207-2283177 transcript_region:SL2.40ch05:2281207..2283177+ go_terms:GO:0005199 functional_description:"Expansin 2 (AHRD V1 ***- Q9FUM2_PRUAV); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00003419g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.66|0.5|4|0|187; (*GB) gi|363808360|ref|NP_001242254.1| (e_value=6e-19) uncharacterized protein LOC100786782 [Glycine max];; (*TAIR) AT5G11600.1 (e_value=6e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3733815-3735015 REVERSE LENGTH=242;; (*ITAG) Solyc11g071220.1.1 (e_value=3e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51827843-51831775 transcript_region:SL2.40ch11:51827843..51831775- functional_description:"Os05g0596200 protein (Fragment) (AHRD V1 *-*- Q0DFE0_ORYSJ)"; NbS00003419g0006.1 protein AED:0.04 eAED:0.21 QI:0|0|0.5|1|0|0|2|91|63; (*GB) gi|224142968|ref|XP_002324799.1| (e_value=2e-31) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=4e-30) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=3e-31) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g066660.1.1 (e_value=3e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52686293-52686949 transcript_region:SL2.40ch08:52686293..52686949- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00003419g0008.1 protein AED:0.33 eAED:0.33 QI:1841|0|0.5|1|0|0|2|0|128; (*GB) gi|255550920|ref|XP_002516508.1| (e_value=1e-17) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11620.1 (e_value=7e-17) | Symbols: | SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related | chr5:3739076-3740127 REVERSE LENGTH=273;; (*ITAG) Solyc08g066550.2.1 (e_value=9e-22) genomic_reference:SL2.40ch08 gene_region:52502571-52504047 transcript_region:SL2.40ch08:52502571..52504047+ go_terms:GO:0005515 functional_description:"Mitogen-activated protein kinase kinase kinase 1 (Predicted) (AHRD V1 ***- B2KI43_RHIFE); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0005515 NbS00012292g0004.1 protein AED:0.24 eAED:0.24 QI:94|1|1|1|1|1|2|381|153; (*GB) gi|33667910|gb|AAQ24534.1| (e_value=5e-40) SWIb domain-containing protein [Solanum chacoense];; (*SWP) sp|Q05024|TRI1_YEAST (e_value=1e-15) Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1;; (*TAIR) AT3G03590.1 (e_value=5e-39) | Symbols: | SWIB/MDM2 domain superfamily protein | chr3:865341-866669 REVERSE LENGTH=143;; (*ITAG) Solyc08g075400.2.1 (e_value=7e-52) genomic_reference:SL2.40ch08 gene_region:56708842-56711429 transcript_region:SL2.40ch08:56708842..56711429- functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- B0UB94_METS4); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00041785g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|291197392|emb|CBK52316.1| (e_value=2e-130) Nb cell deth marker [Nicotiana benthamiana];; (*SWP) sp|P13087|MIRA_RICDU (e_value=6e-20) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=1e-26) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g098740.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:54458295-54458894 transcript_region:SL2.40ch03:54458295..54458894- go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz trypsin inhibitor (AHRD V1 **** B8Y888_TOBAC); contains Interpro domain(s) IPR011065 Kunitz inhibitor ST1-like "; GO:0004867,GO:0015066 NbS00041785g0005.1 protein AED:0.66 eAED:0.66 QI:0|0.5|0|0.66|1|1|3|0|84; (*ITAG) Solyc03g098750.2.1 (e_value=4e-27) genomic_reference:SL2.40ch03 gene_region:54474889-54477037 transcript_region:SL2.40ch03:54474889..54477037- functional_description:"Unknown Protein (AHRD V1)"; NbS00002350g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|0|0.5|2|0|172; (*GB) gi|113205247|gb|AAT39965.2| (e_value=3e-31) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00002350g0011.1 protein AED:0.11 eAED:0.12 QI:0|0.87|0.77|1|1|0.77|9|0|379; (*GB) gi|255577893|ref|XP_002529819.1| (e_value=1e-177) acetolactate synthase, putative [Ricinus communis];; (*SWP) sp|Q55141|ILVH_SYNY3 (e_value=3e-39) Acetolactate synthase small subunit OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ilvH PE=3 SV=2;; (*TAIR) AT5G16290.2 (e_value=3e-171) | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333874-5337387 FORWARD LENGTH=477;; (*ITAG) Solyc11g008780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2962862-2970192 transcript_region:SL2.40ch11:2962862..2970192+ go_terms:GO:0009082,GO:0008152 functional_description:"Acetolactate synthase small subunit (AHRD V1 ***- Q9SMC2_NICPL); contains Interpro domain(s) IPR004789 Acetolactate synthase, small subunit "; GO:0009082,GO:0008152 NbS00044458g0004.1 protein AED:0.00 eAED:0.00 QI:67|1|1|1|0.5|0.66|3|137|362; (*GB) gi|118481171|gb|ABK92537.1| (e_value=7e-100) unknown [Populus trichocarpa];; (*TAIR) AT3G08490.1 (e_value=6e-67) | Symbols: | BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2574105-2575125 REVERSE LENGTH=271;; (*ITAG) Solyc01g087140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73828205-73832676 transcript_region:SL2.40ch01:73828205..73832676+ functional_description:"Harpin-induced protein (AHRD V1 *-*- B6TDG9_MAIZE)"; NbS00009151g0005.1 protein AED:0.15 eAED:0.17 QI:349|0.62|0.77|1|0.75|0.77|9|786|428; (*GB) gi|365222866|gb|AEW69785.1| (e_value=0.0) Hop-interacting protein THI012 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=4e-178) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=3e-179) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc11g066020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48740653-48743035 transcript_region:SL2.40ch11:48740653..48743035- go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00009151g0002.1 protein AED:0.15 eAED:0.79 QI:0|0|0|0.5|1|1|2|0|182; (*ITAG) Solyc01g007480.1.1 (e_value=9e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch01 gene_region:1866963-1867205 transcript_region:SL2.40ch01:1866963..1867205+ functional_description:"Ribosomal protein S12 (Fragment) (AHRD V1 *-*- B0LN88_LYCCH)"; NbS00012452g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|94 NbS00012488g0010.1 protein AED:0.23 eAED:0.26 QI:86|0.57|0.25|1|0.71|0.75|8|0|621; (*GB) gi|157399678|gb|ABV53463.1| (e_value=6e-153) pseudo-response regulator 7 [Castanea sativa];; (*SWP) sp|A2YQ93|PRR37_ORYSI (e_value=2e-72) Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2;; (*TAIR) AT5G02810.1 (e_value=2e-56) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727;; (*ITAG) Solyc04g049670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41997358-42004019 transcript_region:SL2.40ch04:41997358..42004019- go_terms:GO:0016564 functional_description:"Pseudo response regulator (AHRD V1 ***- B9HM08_POPTR); contains Interpro domain(s) IPR010402 CCT domain "; GO:0016564 NbS00012488g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|158; (*GB) gi|147858527|emb|CAN81386.1| (e_value=8e-33) hypothetical protein VITISV_012325 [Vitis vinifera];; (*SWP) sp|Q9LVG4|APRR3_ARATH (e_value=1e-14) Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1;; (*TAIR) AT5G60100.2 (e_value=6e-16) | Symbols: PRR3 | pseudo-response regulator 3 | chr5:24198215-24200502 REVERSE LENGTH=522;; (*ITAG) Solyc04g049680.2.1 (e_value=3e-55) genomic_reference:SL2.40ch04 gene_region:42022911-42024143 transcript_region:SL2.40ch04:42022911..42024143- functional_description:"Pseudo-response regulator 7 (AHRD V1 ***- D0PPG7_CASSA)"; NbS00024108g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|136; (*GB) gi|225423491|ref|XP_002269100.1| (e_value=4e-81) PREDICTED: 14-3-3-like protein GF14 iota-like [Vitis vinifera];; (*SWP) sp|Q9C5W6|14312_ARATH (e_value=6e-78) 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1;; (*TAIR) AT1G26480.1 (e_value=5e-79) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc01g010360.2.1 (e_value=1e-87) genomic_reference:SL2.40ch01 gene_region:5171935-5175097 transcript_region:SL2.40ch01:5171935..5175097- go_terms:GO:0050815 functional_description:"14-3-3-like protein GF14 epsilon (AHRD V1 **-- 14310_ARATH); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00024108g0002.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.33|1|1|3|0|92; (*GB) gi|357487527|ref|XP_003614051.1| (e_value=7e-28) 14-3-3-like protein GF14 iota [Medicago truncatula];; (*SWP) sp|Q9C5W6|14312_ARATH (e_value=2e-28) 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1;; (*TAIR) AT1G26480.1 (e_value=2e-29) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc01g010360.2.1 (e_value=6e-33) genomic_reference:SL2.40ch01 gene_region:5171935-5175097 transcript_region:SL2.40ch01:5171935..5175097- go_terms:GO:0050815 functional_description:"14-3-3-like protein GF14 epsilon (AHRD V1 **-- 14310_ARATH); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00009532g0002.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|235; (*GB) gi|255647747|gb|ACU24334.1| (e_value=1e-106) unknown [Glycine max];; (*SWP) sp|Q96330|FLS1_ARATH (e_value=1e-27) Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1;; (*TAIR) AT3G19000.1 (e_value=6e-32) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6553668-6554987 REVERSE LENGTH=352;; (*ITAG) Solyc06g069900.2.1 (e_value=4e-84) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00026313g0011.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|0|0.33|3|0|954; (*GB) gi|37956237|gb|AAP20228.1| (e_value=0.0) resistance protein SlVe1 precursor [Solanum lycopersicoides];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-90) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT1G47890.1 (e_value=3e-102) | Symbols: AtRLP7, RLP7 | receptor like protein 7 | chr1:17643976-17647035 FORWARD LENGTH=1019;; (*ITAG) Solyc09g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:48645-52064 transcript_region:SL2.40ch09:48645..52064- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00026313g0010.1 protein AED:0.11 eAED:0.15 QI:0|0.33|0|1|1|0.5|4|0|565; (*GB) gi|359481176|ref|XP_002270443.2| (e_value=0.0) PREDICTED: transcription factor bHLH140-like [Vitis vinifera];; (*SWP) sp|Q9M041|BH140_ARATH (e_value=4e-179) Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1;; (*TAIR) AT5G01310.1 (e_value=3e-180) | Symbols: APTX | APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912;; (*ITAG) Solyc09g005100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59939-64049 transcript_region:SL2.40ch09:59939..64049+ go_terms:GO:0003700,GO:0047627 functional_description:"Aprataxin (AHRD V1 *--- B1AXX8_MOUSE); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003700,GO:0047627 NbS00026313g0006.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|69 NbS00035501g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|68; (*ITAG) Solyc02g033040.2.1 (e_value=3e-15) genomic_reference:SL2.40ch02 gene_region:20410724-20412163 transcript_region:SL2.40ch02:20410724..20412163+ functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035501g0003.1 protein AED:0.32 eAED:0.48 QI:0|0|0|1|0|0.25|4|0|117 NbS00014607g0001.1 protein AED:0.31 eAED:0.58 QI:49|0|0.5|1|0|0|2|0|78; (*GB) gi|224142137|ref|XP_002324415.1| (e_value=6e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g007060.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1498752-1499498 transcript_region:SL2.40ch12:1498752..1499498- functional_description:"Unknown Protein (AHRD V1)"; NbS00000009g0010.1 protein AED:0.15 eAED:0.15 QI:222|0.82|0.88|1|1|1|18|0|612; (*GB) gi|159906513|gb|ABI98682.2| (e_value=0.0) chloroplast NADP-malic enzyme precursor [Nicotiana tabacum];; (*SWP) sp|P37222|MAOC_SOLLC (e_value=0.0) NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G79750.1 (e_value=0.0) | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646;; (*ITAG) Solyc03g120990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63268132-63273261 transcript_region:SL2.40ch03:63268132..63273261+ go_terms:GO:0004473 functional_description:"Malic enzyme (AHRD V1 ***- O04935_SOLLC); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00000009g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.85|1|0.8|0.90|21|321|1430; (*GB) gi|297743203|emb|CBI36070.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XIE2|AB36G_ARATH (e_value=0.0) ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1;; (*TAIR) AT1G59870.1 (e_value=0.0) | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | ABC-2 and Plant PDR ABC-type transporter family protein | chr1:22034661-22039844 FORWARD LENGTH=1469;; (*ITAG) Solyc03g120980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63257744-63266892 transcript_region:SL2.40ch03:63257744..63266892+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000009g0011.1 protein AED:0.10 eAED:0.44 QI:0|0|0|1|0|0|8|0|435; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016847g0014.1 protein AED:0.25 eAED:0.25 QI:9|1|0.5|1|1|1|2|0|92 NbS00016847g0017.1 protein AED:0.32 eAED:0.32 QI:248|1|1|1|0.5|0.57|7|719|199; (*GB) gi|4097579|gb|AAD00116.1| (e_value=1e-147) NTGP1 [Nicotiana tabacum];; (*SWP) sp|Q9ZRD6|YKT61_ARATH (e_value=1e-133) VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1;; (*TAIR) AT5G58060.1 (e_value=1e-134) | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily protein | chr5:23498277-23500128 FORWARD LENGTH=199;; (*ITAG) Solyc07g005200.2.1 (e_value=2e-148) genomic_reference:SL2.40ch07 gene_region:190053-194064 transcript_region:SL2.40ch07:190053..194064+ go_terms:GO:0019706,GO:0005484 functional_description:"Synaptobrevin homolog YKT6 (AHRD V1 **-- C4QZ63_PICPG); contains Interpro domain(s) IPR010908 Longin "; GO:0019706,GO:0005484 NbS00016847g0019.1 protein AED:0.24 eAED:0.24 QI:206|0.5|0.8|1|0.5|0.6|5|301|248; (*GB) gi|350539918|ref|NP_001234832.1| (e_value=3e-103) temperature-induced lipocalin' [Solanum lycopersicum];; (*SWP) sp|Q46036|BLC_CITFR (e_value=5e-17) Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1;; (*TAIR) AT5G58070.1 (e_value=2e-93) | Symbols: ATTIL, TIL | temperature-induced lipocalin | chr5:23500512-23501156 REVERSE LENGTH=186;; (*ITAG) Solyc07g005210.2.1 (e_value=6e-106) genomic_reference:SL2.40ch07 gene_region:202269-203546 transcript_region:SL2.40ch07:202269..203546- go_terms:GO:0005515,GO:0005319 functional_description:"Outer membrane lipoprotein blc (AHRD V1 **-- D0RZG9_ACICA); contains Interpro domain(s) IPR002345 Lipocalin "; GO:0005515,GO:0005319 NbS00016847g0020.1 protein AED:0.22 eAED:0.31 QI:0|0|0.33|0.66|0.5|1|3|785|91 NbS00026222g0005.1 protein AED:0.21 eAED:0.21 QI:94|1|1|1|1|1|2|359|90; (*GB) gi|255579466|ref|XP_002530576.1| (e_value=3e-47) 60S ribosomal protein L51, putative [Ricinus communis];; (*TAIR) AT3G59650.1 (e_value=5e-49) | Symbols: | mitochondrial ribosomal protein L51/S25/CI-B8 family protein | chr3:22033216-22033928 FORWARD LENGTH=119;; (*ITAG) Solyc04g014390.2.1 (e_value=2e-57) genomic_reference:SL2.40ch04 gene_region:4638619-4641880 transcript_region:SL2.40ch04:4638619..4641880+ go_terms:GO:0003735,GO:0005515 functional_description:"Mitochondrial ribosomal protein L43 (AHRD V1 ***- B6T6X8_MAIZE); contains Interpro domain(s) IPR007741 Ribosomal protein/NADH dehydrogenase domain "; GO:0003735,GO:0005515 NbS00009693g0019.1 protein AED:0.04 eAED:0.04 QI:584|1|1|1|0.66|0.75|4|730|331; (*GB) gi|225453889|ref|XP_002278819.1| (e_value=2e-131) PREDICTED: dihydroflavonol-4-reductase isoform 1 [Vitis vinifera];; (*SWP) sp|P51106|DFRA_HORVU (e_value=5e-79) Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1;; (*TAIR) AT2G45400.1 (e_value=3e-100) | Symbols: BEN1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:18703960-18706235 REVERSE LENGTH=364;; (*ITAG) Solyc01g094070.2.1 (e_value=2e-110) genomic_reference:SL2.40ch01 gene_region:77418718-77420479 transcript_region:SL2.40ch01:77418718..77420479+ go_terms:GO:0016614,GO:0033729 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 **** D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016614,GO:0033729 NbS00009693g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|435; (*GB) gi|225454018|ref|XP_002281007.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|O81312|GAE3_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1;; (*TAIR) AT4G00110.1 (e_value=0.0) | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 | chr4:38702-39994 REVERSE LENGTH=430;; (*ITAG) Solyc05g050990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60347337-60348644 transcript_region:SL2.40ch05:60347337..60348644+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7M5S7_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00009693g0021.1 protein AED:0.19 eAED:0.23 QI:0|0.85|0.62|1|1|1|8|0|400; (*GB) gi|114176|sp|P11043.1|AROA_PETHY (e_value=0.0) RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor;; (*SWP) sp|P11043|AROA_PETHY (e_value=0.0) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1;; (*TAIR) AT2G45300.1 (e_value=0.0) | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | chr2:18677518-18679868 FORWARD LENGTH=520;; (*ITAG) Solyc05g050980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60337084-60344001 transcript_region:SL2.40ch05:60337084..60344001+ go_terms:GO:0003866 functional_description:"3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V1 **** Q30CZ8_FAGSY); contains Interpro domain(s) IPR001986 3-phosphoshikimate 1-carboxyvinyltransferase, core "; GO:0003866 NbS00009693g0020.1 protein AED:0.15 eAED:0.15 QI:115|1|0.6|1|0.75|0.6|5|354|151; (*GB) gi|82621170|gb|ABB86273.1| (e_value=6e-106) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=6e-104) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=2e-101) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=1e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00021021g0007.1 protein AED:0.16 eAED:0.16 QI:193|0.66|0.5|0.75|0.66|0.5|4|0|402; (*GB) gi|225440336|ref|XP_002270031.1| (e_value=3e-78) PREDICTED: dof zinc finger protein DOF5.1-like [Vitis vinifera];; (*SWP) sp|O80928|DOF24_ARATH (e_value=8e-43) Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1;; (*TAIR) AT2G37590.1 (e_value=6e-44) | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one finger 2.4 | chr2:15769292-15770497 FORWARD LENGTH=330;; (*ITAG) Solyc09g010680.2.1 (e_value=1e-128) genomic_reference:SL2.40ch09 gene_region:3999004-4000745 transcript_region:SL2.40ch09:3999004..4000745+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00021021g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.25|1|0|0|4|0|283; (*GB) gi|225440332|ref|XP_002269924.1| (e_value=4e-145) PREDICTED: xylosyltransferase 2-like [Vitis vinifera];; (*TAIR) AT5G15050.1 (e_value=5e-116) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc09g010660.2.1 (e_value=8e-174) genomic_reference:SL2.40ch09 gene_region:3982851-3987785 transcript_region:SL2.40ch09:3982851..3987785+ go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00025437g0012.1 protein AED:0.02 eAED:0.02 QI:65|1|0.8|1|0.75|1|5|0|171; (*GB) gi|53793732|gb|AAU93595.1| (e_value=3e-115) HVA22-like protein c , putative [Solanum demissum];; (*SWP) sp|Q9S784|HA22C_ARATH (e_value=5e-81) HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1;; (*TAIR) AT1G69700.1 (e_value=4e-82) | Symbols: ATHVA22C, HVA22C | HVA22 homologue C | chr1:26220337-26221663 FORWARD LENGTH=184;; (*ITAG) Solyc05g007300.2.1 (e_value=3e-120) genomic_reference:SL2.40ch05 gene_region:1952953-1954907 transcript_region:SL2.40ch05:1952953..1954907- go_terms:GO:0031849,GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 *--* C3KJ86_ANOFI); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0031849,GO:0042802 NbS00025437g0003.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|142942527|gb|ABO93018.1| (e_value=1e-59) putative TCP transcription factor [Solanum tuberosum];; (*SWP) sp|Q9C9L2|TCP15_ARATH (e_value=3e-51) Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1;; (*TAIR) AT1G69690.1 (e_value=2e-52) | Symbols: | TCP family transcription factor | chr1:26216449-26217426 FORWARD LENGTH=325;; (*ITAG) Solyc05g007420.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1999465-2000616 transcript_region:SL2.40ch05:1999465..2000616- functional_description:"TCP family transcription factor (AHRD V1 *-*- A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00044253g0005.1 protein AED:0.19 eAED:0.19 QI:12|0.5|0.33|0.66|1|1|3|0|76; (*GB) gi|388506856|gb|AFK41494.1| (e_value=2e-16) unknown [Lotus japonicus];; (*SWP) sp|Q9LRP1|NPS13_ARATH (e_value=8e-15) Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1;; (*TAIR) AT3G17440.1 (e_value=6e-16) | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 | chr3:5969909-5972290 REVERSE LENGTH=269;; (*ITAG) Solyc12g098950.1.1 (e_value=6e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64632421-64638462 transcript_region:SL2.40ch12:64632421..64638462+ go_terms:GO:0016020 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6U1B4_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00003658g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.6|1|1|0.9|10|0|648; (*GB) gi|307136044|gb|ADN33896.1| (e_value=0.0) NADH dehydrogenase [Cucumis melo subsp. melo];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=4e-78) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT2G20800.1 (e_value=0.0) | Symbols: NDB4 | NAD(P)H dehydrogenase B4 | chr2:8953252-8955699 REVERSE LENGTH=582;; (*ITAG) Solyc07g054670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60243560-60247429 transcript_region:SL2.40ch07:60243560..60247429+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00003658g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|475; (*GB) gi|225447637|ref|XP_002271315.1| (e_value=6e-112) PREDICTED: uncharacterized protein LOC100264907 [Vitis vinifera];; (*TAIR) AT4G28230.1 (e_value=1e-67) | Symbols: | unknown protein; Has 444 Blast hits to 358 proteins in 107 species: Archae - 0; Bacteria - 20; Metazoa - 179; Fungi - 26; Plants - 38; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink). | chr4:13995990-13997198 REVERSE LENGTH=402;; (*ITAG) Solyc07g054690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60252879-60254300 transcript_region:SL2.40ch07:60252879..60254300- functional_description:"Unknown Protein (AHRD V1)"; NbS00003658g0015.1 protein AED:0.09 eAED:0.09 QI:22|1|0.5|1|0|0|2|0|139; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-20) hypothetical protein [Cucumis melo subsp. melo]; NbS00003658g0002.1 protein AED:0.10 eAED:0.11 QI:216|0.33|0.75|1|0|0.5|4|748|364; (*GB) gi|224059682|ref|XP_002299968.1| (e_value=3e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5BIV3|PPR35_ARATH (e_value=3e-82) Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1;; (*TAIR) AT1G11900.1 (e_value=2e-83) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4013166-4014630 REVERSE LENGTH=367;; (*ITAG) Solyc07g054680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60248276-60250658 transcript_region:SL2.40ch07:60248276..60250658- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003658g0104.1 protein AED:0.35 eAED:0.54 QI:25|0|0|1|0|0|2|0|117 NbS00003658g0105.1 protein AED:0.37 eAED:0.42 QI:0|0|0|1|0|0|3|0|107 NbS00062023g0004.1 protein AED:0.21 eAED:0.21 QI:120|0.83|1|1|0.66|0.57|7|545|281; (*GB) gi|357504047|ref|XP_003622312.1| (e_value=4e-68) Transcription factor GTE6 [Medicago truncatula];; (*TAIR) AT5G40600.1 (e_value=5e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16254907-16256765 REVERSE LENGTH=325;; (*ITAG) Solyc02g067900.2.1 (e_value=4e-158) genomic_reference:SL2.40ch02 gene_region:32564786-32569825 transcript_region:SL2.40ch02:32564786..32569825- functional_description:"Transcription factor GTE6 (AHRD V1 *-*- B6UCC7_MAIZE)"; NbS00021892g0003.1 protein AED:0.04 eAED:0.04 QI:191|1|1|1|0.5|0.4|5|817|252; (*GB) gi|226872|prf||1609235A (e_value=2e-124) chlorophyll a/b binding protein;; (*SWP) sp|P27522|CB13_SOLLC (e_value=4e-125) Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1;; (*TAIR) AT1G61520.3 (e_value=2e-123) | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700152-22701149 FORWARD LENGTH=273;; (*ITAG) Solyc12g011280.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4139454-4140793 transcript_region:SL2.40ch12:4139454..4140793- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00021892g0015.1 protein AED:0.17 eAED:0.17 QI:30|0.62|0.41|1|0.43|0.58|17|48|862; (*GB) gi|357451443|ref|XP_003595998.1| (e_value=1e-171) Kinesin-4 [Medicago truncatula];; (*SWP) sp|P46875|ATK3_ARATH (e_value=3e-41) Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1;; (*TAIR) AT1G72250.1 (e_value=3e-97) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr1:27192902-27198118 FORWARD LENGTH=1195;; (*ITAG) Solyc12g011290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4145546-4151148 transcript_region:SL2.40ch12:4145546..4151148+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00021892g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.57|0.85|0.83|0.85|7|0|337; (*GB) gi|350539363|ref|NP_001234645.1| (e_value=0.0) ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum];; (*SWP) sp|Q5XF75|EFTS_ARATH (e_value=1e-137) Elongation factor Ts, mitochondrial OS=Arabidopsis thaliana GN=EFTS PE=2 SV=1;; (*TAIR) AT4G11120.1 (e_value=1e-138) | Symbols: | translation elongation factor Ts (EF-Ts), putative | chr4:6778066-6779934 FORWARD LENGTH=395;; (*ITAG) Solyc12g011270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4132345-4138535 transcript_region:SL2.40ch12:4132345..4138535+ go_terms:GO:0005622 functional_description:"Elongation factor Ts (AHRD V1 ***- Q9SWW0_SOLLC); contains Interpro domain(s) IPR018101 Translation elongation factor Ts, conserved site "; GO:0005622 NbS00045592g0005.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|632; (*GB) gi|359494657|ref|XP_002264130.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9LT48|PP244_ARATH (e_value=2e-155) Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1;; (*TAIR) AT3G20730.1 (e_value=2e-156) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:7247095-7248878 FORWARD LENGTH=564;; (*ITAG) Solyc02g070710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34942957-34944801 transcript_region:SL2.40ch02:34942957..34944801- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00045592g0016.1 protein AED:0.23 eAED:0.23 QI:186|0.6|0.66|1|0.6|0.5|6|135|280; (*GB) gi|225463460|ref|XP_002276135.1| (e_value=4e-133) PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8H124|Y2446_ARATH (e_value=1e-119) Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1;; (*TAIR) AT2G34460.1 (e_value=8e-121) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14529635-14530732 FORWARD LENGTH=280;; (*ITAG) Solyc02g070760.2.1 (e_value=8e-167) genomic_reference:SL2.40ch02 gene_region:34956175-34960025 transcript_region:SL2.40ch02:34956175..34960025- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B0CAN3_ACAM1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00045592g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|474; (*GB) gi|224143391|ref|XP_002336034.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJB5|RP8L3_ARATH (e_value=3e-27) Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1;; (*TAIR) AT5G35450.1 (e_value=2e-28) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc04g009260.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2728030-2730579 transcript_region:SL2.40ch04:2728030..2730579- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00045592g0002.1 protein AED:0.07 eAED:0.65 QI:420|0|0.5|1|0|0.5|2|0|232; (*GB) gi|224112735|ref|XP_002316277.1| (e_value=4e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|B9LSX2|RLME_HALLT (e_value=1e-32) Ribosomal RNA large subunit methyltransferase E OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rlmE PE=3 SV=1;; (*TAIR) AT5G13830.1 (e_value=2e-108) | Symbols: | FtsJ-like methyltransferase family protein | chr5:4467363-4468487 FORWARD LENGTH=224; NbS00045592g0019.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|468; (*GB) gi|297744669|emb|CBI37931.3| (e_value=5e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SX38|DRL4_ARATH (e_value=6e-58) Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=2;; (*TAIR) AT1G50180.1 (e_value=5e-59) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc02g070730.1.1 (e_value=4e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34947488-34948712 transcript_region:SL2.40ch02:34947488..34948712- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00006145g0004.1 protein AED:0.15 eAED:0.19 QI:0|0.85|0.5|1|0.85|0.87|8|0|376; (*GB) gi|224071926|ref|XP_002303595.1| (e_value=5e-175) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3TD49|SPP2B_MOUSE (e_value=5e-13) Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2;; (*TAIR) AT1G63690.1 (e_value=2e-161) | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540;; (*ITAG) Solyc08g081180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61415165-61423265 transcript_region:SL2.40ch08:61415165..61423265+ go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00049002g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.66|0.75|4|0|445; (*GB) gi|255540019|ref|XP_002511074.1| (e_value=6e-177) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G61820.1 (e_value=1e-149) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc06g068730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38994782-38997601 transcript_region:SL2.40ch06:38994782..38997601- functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00049002g0011.1 protein AED:0.01 eAED:0.01 QI:263|1|1|1|1|1|2|280|213; (*GB) gi|317106610|dbj|BAJ53117.1| (e_value=2e-78) JHL07K02.7 [Jatropha curcas];; (*SWP) sp|Q67YC9|Y4141_ARATH (e_value=4e-68) Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1;; (*TAIR) AT3G23760.1 (e_value=4e-71) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:8562965-8564640 REVERSE LENGTH=194;; (*ITAG) Solyc06g068750.2.1 (e_value=3e-115) genomic_reference:SL2.40ch06 gene_region:39002013-39003551 transcript_region:SL2.40ch06:39002013..39003551+ go_terms:GO:0016757 functional_description:"Transferase transferring glycosyl groups (AHRD V1 **-* D7MH74_ARALY)"; GO:0016757 NbS00049002g0015.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|0|0.25|4|1125|148; (*GB) gi|317106612|dbj|BAJ53119.1| (e_value=2e-59) JHL07K02.9 [Jatropha curcas];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=2e-26) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT5G51030.1 (e_value=2e-60) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314;; (*ITAG) Solyc06g068740.2.1 (e_value=7e-74) genomic_reference:SL2.40ch06 gene_region:38998422-39001725 transcript_region:SL2.40ch06:38998422..39001725+ go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7B (AHRD V1 *-*- DRS7B_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00013899g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|812; (*GB) gi|55824321|gb|AAV66308.1| (e_value=7e-91) acyltransferase [Capsicum frutescens];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=6e-62) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=3e-61) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g012020.1.1 (e_value=3e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4352964-4354304 transcript_region:SL2.40ch04:4352964..4354304- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00002716g0008.1 protein AED:0.15 eAED:0.16 QI:24|1|0.71|1|0.83|0.85|7|221|499; (*GB) gi|224119626|ref|XP_002318120.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XEE9|ALG11_ARATH (e_value=0.0) GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2;; (*TAIR) AT2G40190.1 (e_value=0.0) | Symbols: LEW3 | UDP-Glycosyltransferase superfamily protein | chr2:16785232-16787257 FORWARD LENGTH=463;; (*ITAG) Solyc10g076800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59085382-59089499 transcript_region:SL2.40ch10:59085382..59089499- go_terms:GO:0009058 functional_description:"Alpha-1 2-mannosyltransferase alg11 (AHRD V1 **-- B6SM36_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00002716g0010.1 protein AED:0.29 eAED:0.29 QI:5|0|0|0.66|0.5|0.33|3|0|124; (*GB) gi|357490981|ref|XP_003615778.1| (e_value=2e-19) FAR1-related protein [Medicago truncatula];; (*SWP) sp|Q9SY66|FRS11_ARATH (e_value=4e-21) Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1;; (*TAIR) AT1G10240.1 (e_value=3e-22) | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680;; (*ITAG) Solyc01g103180.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:83609493-83613702 transcript_region:SL2.40ch01:83609493..83613702+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00035236g0005.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|111; (*GB) gi|15219412|ref|NP_178073.1| (e_value=9e-26) phosphoglycerate kinase [Arabidopsis thaliana];; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=4e-26) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=2e-28) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=3e-26) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00016602g0019.1 protein AED:0.13 eAED:0.13 QI:309|1|1|1|1|1|5|249|268; (*GB) gi|257831437|gb|ACV71019.1| (e_value=5e-135) UPA19 [Capsicum annuum];; (*SWP) sp|Q96SZ5|AEDO_HUMAN (e_value=2e-19) 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2;; (*TAIR) AT5G39890.1 (e_value=3e-99) | Symbols: | Protein of unknown function (DUF1637) | chr5:15974543-15976013 FORWARD LENGTH=276;; (*ITAG) Solyc02g087740.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:44629695-44632575 transcript_region:SL2.40ch02:44629695..44632575+ go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B4F886_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00016602g0026.1 protein AED:0.13 eAED:0.14 QI:159|0.85|0.87|1|0.85|0.87|8|169|509; (*GB) gi|224141357|ref|XP_002324039.1| (e_value=0.0) f-box family protein [Populus trichocarpa];; (*ITAG) Solyc02g087730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44619445-44628288 transcript_region:SL2.40ch02:44619445..44628288+ functional_description:"Katanin p80 WD40-containing subunit B1 (AHRD V1 *--- KTNB1_XENTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016602g0016.1 protein AED:0.14 eAED:0.14 QI:117|0.55|0.6|0.9|0.44|0.5|10|214|689; (*GB) gi|15824565|gb|AAL09397.1|AF307094_1 (e_value=0.0) non-cell-autonomous protein pathway1 [Nicotiana tabacum];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=1e-78) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=5e-127) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00016602g0022.1 protein AED:0.24 eAED:0.27 QI:0|0.6|0.54|0.90|0.7|0.72|11|684|464; (*GB) gi|296082869|emb|CBI22170.3| (e_value=4e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=2e-56) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G74690.1 (e_value=2e-57) | Symbols: IQD31 | IQ-domain 31 | chr1:28061498-28063924 REVERSE LENGTH=587;; (*ITAG) Solyc02g087760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44643248-44648496 transcript_region:SL2.40ch02:44643248..44648496+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6U6R2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00016602g0018.1 protein AED:0.28 eAED:0.28 QI:193|1|1|1|0.8|0.66|6|894|152; (*GB) gi|195635283|gb|ACG37110.1| (e_value=1e-110) ubiquitin-conjugating enzyme E2-17 kDa [Zea mays];; (*SWP) sp|P25866|UBC2_WHEAT (e_value=4e-110) Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1;; (*TAIR) AT2G02760.1 (e_value=7e-110) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc02g087750.2.1 (e_value=7e-113) genomic_reference:SL2.40ch02 gene_region:44634950-44640059 transcript_region:SL2.40ch02:44634950..44640059+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 ***- UBC2_WHEAT); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00010744g0011.1 protein AED:0.12 eAED:0.12 QI:188|0.66|0.71|1|0|0|7|241|302; (*GB) gi|224111314|ref|XP_002315812.1| (e_value=2e-89) hypothetical protein POPTRDRAFT_231473 [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-17) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G70260.1 (e_value=4e-78) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:26457067-26459338 REVERSE LENGTH=375;; (*ITAG) Solyc05g005870.2.1 (e_value=1e-150) genomic_reference:SL2.40ch05 gene_region:675439-679688 transcript_region:SL2.40ch05:675439..679688+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7KXZ8_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00010744g0009.1 protein AED:0.22 eAED:0.22 QI:71|0.25|0.4|1|0|0|5|613|223; (*GB) gi|357486013|ref|XP_003613294.1| (e_value=4e-30) Auxin-induced protein 5NG4 [Medicago truncatula];; (*TAIR) AT5G40230.1 (e_value=2e-17) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:16079814-16081735 REVERSE LENGTH=370;; (*ITAG) Solyc05g005830.2.1 (e_value=2e-34) genomic_reference:SL2.40ch05 gene_region:653711-656736 transcript_region:SL2.40ch05:653711..656736+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FL09_ARATH)"; NbS00010744g0007.1 protein AED:0.40 eAED:0.41 QI:68|1|0.83|1|1|1|6|0|352; (*GB) gi|224099697|ref|XP_002311582.1| (e_value=2e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-57) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G28050.1 (e_value=2e-70) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367;; (*ITAG) Solyc05g005860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:665864-671925 transcript_region:SL2.40ch05:665864..671925+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FL09_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00023080g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|0.75|4|1253|309; (*GB) gi|359478523|ref|XP_002278199.2| (e_value=7e-69) PREDICTED: uncharacterized protein LOC100258756 [Vitis vinifera];; (*TAIR) AT3G14750.1 (e_value=3e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). | chr3:4953765-4955373 REVERSE LENGTH=331;; (*ITAG) Solyc09g055700.2.1 (e_value=2e-120) genomic_reference:SL2.40ch09 gene_region:39587649-39592133 transcript_region:SL2.40ch09:39587649..39592133+ functional_description:"Myosin-like protein (AHRD V1 **-- B6TYE1_MAIZE); contains Interpro domain(s) IPR006912 Protein of unknown function DUF635 "; NbS00023080g0210.1 protein AED:0.20 eAED:0.29 QI:0|0|0.25|1|1|1|4|0|634 NbS00028291g0001.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|10798752|dbj|BAB16428.1| (e_value=6e-38) P-rich protein EIG-I30 [Nicotiana tabacum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=2e-20) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12510.1 (e_value=4e-23) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129;; (*ITAG) Solyc08g078870.1.1 (e_value=5e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59728469-59728909 transcript_region:SL2.40ch08:59728469..59728909+ go_terms:GO:0008289 functional_description:"Proline-rich protein (AHRD V1 **-- Q41125_PHAVU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00028291g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0|0.66|3|0|312; (*GB) gi|1620970|emb|CAA70100.1| (e_value=0.0) L-lactate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|P22988|LDHA_HORVU (e_value=3e-129) L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 SV=1;; (*TAIR) AT4G17260.1 (e_value=2e-166) | Symbols: | Lactate/malate dehydrogenase family protein | chr4:9674057-9675309 FORWARD LENGTH=353;; (*ITAG) Solyc08g078850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59715884-59718206 transcript_region:SL2.40ch08:59715884..59718206+ go_terms:GO:0004459 functional_description:"L-lactate dehydrogenase (AHRD V1 **** Q96569_SOLLC); contains Interpro domain(s) IPR011304 L-lactate dehydrogenase "; GO:0004459 NbS00028291g0009.1 protein AED:0.29 eAED:0.29 QI:198|1|1|1|1|1|4|438|125; (*GB) gi|224125184|ref|XP_002329914.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK0|NDUB8_ARATH (e_value=1e-66) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1;; (*TAIR) AT5G47570.1 (e_value=1e-67) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19292869-19294666 REVERSE LENGTH=125;; (*ITAG) Solyc08g078860.2.1 (e_value=7e-73) genomic_reference:SL2.40ch08 gene_region:59718819-59724122 transcript_region:SL2.40ch08:59718819..59724122+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q010L3_OSTTA)"; NbS00046488g0008.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|477; (*GB) gi|255578801|ref|XP_002530257.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=2e-178) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT5G64790.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:25902713-25904559 FORWARD LENGTH=485;; (*ITAG) Solyc04g051590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50029511-50032123 transcript_region:SL2.40ch04:50029511..50032123+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00002628g0010.1 protein AED:0.17 eAED:0.16 QI:239|0.83|0.71|1|0.66|0.42|7|901|1091; (*GB) gi|291278198|gb|ADD91580.1| (e_value=0.0) calcium ATPase [Nicotiana benthamiana];; (*SWP) sp|O22218|ACA4_ARATH (e_value=0.0) Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1;; (*TAIR) AT2G41560.1 (e_value=0.0) | Symbols: ACA4 | autoinhibited Ca(2+)-ATPase, isoform 4 | chr2:17332256-17337179 REVERSE LENGTH=1030;; (*ITAG) Solyc04g016260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7057222-7066683 transcript_region:SL2.40ch04:7057222..7066683+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00002628g0012.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|378|178; (*GB) gi|225441898|ref|XP_002284412.1| (e_value=2e-54) PREDICTED: uncharacterized protein LOC100246864 isoform 1 [Vitis vinifera];; (*TAIR) AT2G41600.5 (e_value=9e-43) | Symbols: | Mitochondrial glycoprotein family protein | chr2:17344747-17346701 REVERSE LENGTH=220;; (*ITAG) Solyc04g016250.2.1 (e_value=2e-67) genomic_reference:SL2.40ch04 gene_region:7045007-7049591 transcript_region:SL2.40ch04:7045007..7049591+ go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein expressed (AHRD V1 *-*- Q2RAS2_ORYSJ); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00002628g0011.1 protein AED:0.08 eAED:0.08 QI:161|1|1|1|0.75|0.6|5|244|310; (*GB) gi|297810509|ref|XP_002873138.1| (e_value=3e-180) hypothetical protein ARALYDRAFT_487196 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=7e-180) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc04g016280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7068003-7071369 transcript_region:SL2.40ch04:7068003..7071369- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00005198g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|333; (*GB) gi|356546868|ref|XP_003541844.1| (e_value=2e-55) PREDICTED: uncharacterized protein LOC100809181, partial [Glycine max];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=4e-39) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=3e-42) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc10g007070.2.1 (e_value=4e-78) genomic_reference:SL2.40ch10 gene_region:1455085-1456837 transcript_region:SL2.40ch10:1455085..1456837- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q30GY4_9SOLN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00004413g0003.1 protein AED:0.33 eAED:0.34 QI:193|0.62|0.66|0.88|0.75|0.66|9|425|261; (*GB) gi|390134563|gb|AFL56269.1| (e_value=1e-107) cyclophilin-like peptidyl-prolyl cis-trans isomerase [Cirsium arvense];; (*SWP) sp|Q94A16|CP21C_ARATH (e_value=7e-73) Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2;; (*TAIR) AT3G66654.2 (e_value=1e-81) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:2088694-2090297 FORWARD LENGTH=236;; (*ITAG) Solyc09g008410.2.1 (e_value=3e-146) genomic_reference:SL2.40ch09 gene_region:1861145-1869636 transcript_region:SL2.40ch09:1861145..1869636- go_terms:GO:0051082 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D8SL30_SELML); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082 NbS00045608g0006.1 protein AED:0.27 eAED:0.27 QI:215|1|0.75|1|0.85|0.87|8|0|724; (*GB) gi|13620228|emb|CAC36403.1| (e_value=0.0) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q8RXR2|CLCF_ARATH (e_value=0.0) Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2;; (*TAIR) AT1G55620.2 (e_value=0.0) | Symbols: CLC-F, ATCLC-F | chloride channel F | chr1:20787338-20790990 REVERSE LENGTH=781;; (*ITAG) Solyc07g066210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64909121-64917912 transcript_region:SL2.40ch07:64909121..64917912+ go_terms:GO:0005515 functional_description:"H(+)/Cl(-) exchange transporter ClcA (AHRD V1 *-*- D0Z037_LISDA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated IPR000644 Cystathionine beta-synthase, core "; GO:0005515 NbS00026064g0004.1 protein AED:0.24 eAED:0.29 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|225445170|ref|XP_002284107.1| (e_value=1e-61) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5R587|RPAB1_PONAB (e_value=5e-20) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1;; (*TAIR) AT3G22320.1 (e_value=2e-55) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=6e-64) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00029024g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|3|0|478; (*GB) gi|224143233|ref|XP_002324888.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=6e-177) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25260.1 (e_value=1e-167) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8752751-8754282 FORWARD LENGTH=463;; (*ITAG) Solyc01g089910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75383651-75385711 transcript_region:SL2.40ch01:75383651..75385711- functional_description:"Flotillin domain protein (AHRD V1 ***- B8M1F1_TALSN); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00029024g0013.1 protein AED:0.09 eAED:0.13 QI:75|0.5|0.33|1|0.5|0.33|3|373|436; (*GB) gi|225453344|ref|XP_002270492.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g02150 [Vitis vinifera];; (*SWP) sp|Q8LPS6|PPR3_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2;; (*TAIR) AT1G02150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:408779-410433 FORWARD LENGTH=524;; (*ITAG) Solyc01g089870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75358879-75362023 transcript_region:SL2.40ch01:75358879..75362023- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP29_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029024g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|359806398|ref|NP_001241494.1| (e_value=2e-14) uncharacterized protein LOC100810725 [Glycine max];; (*ITAG) Solyc01g089890.2.1 (e_value=8e-42) genomic_reference:SL2.40ch01 gene_region:75364730-75365497 transcript_region:SL2.40ch01:75364730..75365497- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00029024g0011.1 protein AED:0.26 eAED:0.27 QI:118|0.61|0.63|0.90|0.38|0.59|22|409|566; (*GB) gi|359489303|ref|XP_002271419.2| (e_value=0.0) PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [Vitis vinifera];; (*SWP) sp|A8MR93|ALG12_ARATH (e_value=0.0) Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase OS=Arabidopsis thaliana GN=ALG12 PE=1 SV=1;; (*TAIR) AT1G02145.3 (e_value=0.0) | Symbols: ALG12, EBS4 | homolog of asparagine-linked glycosylation 12 | chr1:404627-408485 FORWARD LENGTH=497;; (*ITAG) Solyc01g089900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75366257-75382297 transcript_region:SL2.40ch01:75366257..75382297- go_terms:GO:0000009 functional_description:"Alpha-mannosyltransferase (AHRD V1 **** B7FU21_PHATR); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0000009 NbS00022019g0006.1 protein AED:0.35 eAED:0.40 QI:0|0.57|0.5|0.87|0.85|0.75|8|0|294; (*GB) gi|9885803|gb|AAG01534.1|AF289467_1 (e_value=0.0) cyclin-dependent kinase A:4 [Nicotiana tabacum];; (*SWP) sp|Q38772|CDC2A_ANTMA (e_value=0.0) Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2;; (*TAIR) AT3G48750.1 (e_value=0.0) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc12g095860.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63316141-63319581 transcript_region:SL2.40ch12:63316141..63319581- go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** B5X1T4_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00013712g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.6|5|0|246; (*GB) gi|357491931|ref|XP_003616253.1| (e_value=2e-137) hypothetical protein MTR_5g077840 [Medicago truncatula];; (*SWP) sp|O13861|YEXA_SCHPO (e_value=2e-39) Uncharacterized protein C1A6.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1A6.10 PE=2 SV=1;; (*TAIR) AT5G37530.1 (e_value=1e-130) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457;; (*ITAG) Solyc05g051230.2.1 (e_value=4e-149) genomic_reference:SL2.40ch05 gene_region:60637189-60645931 transcript_region:SL2.40ch05:60637189..60645931+ go_terms:GO:0005515 functional_description:"Adenylyltransferase and sulfurtransferase MOCS3 (AHRD V1 *--- MOCS3_DROGR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0005515 NbS00021283g0004.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|1|1|2|0|313; (*GB) gi|255586733|ref|XP_002533989.1| (e_value=1e-59) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q940Q4|ATL13_ARATH (e_value=2e-34) RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2;; (*TAIR) AT4G30400.1 (e_value=1e-35) | Symbols: | RING/U-box superfamily protein | chr4:14867068-14868486 FORWARD LENGTH=472;; (*ITAG) Solyc07g006360.1.1 (e_value=2e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1188947-1190386 transcript_region:SL2.40ch07:1188947..1190386+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00027783g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.6|1|1|1|5|533|449; (*GB) gi|225427065|ref|XP_002275168.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q54NQ0|PSD13_DICDI (e_value=2e-84) 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1;; (*TAIR) AT4G19006.1 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr4:10409349-10411347 REVERSE LENGTH=386;; (*ITAG) Solyc05g053140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62417721-62424738 transcript_region:SL2.40ch05:62417721..62424738- go_terms:GO:0005515 functional_description:"26S proteasome non-ATPase regulatory subunit 13 (AHRD V1 ***- B6TA88_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00020412g0003.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.83|1|1|1|6|0|158; (*GB) gi|255553233|ref|XP_002517659.1| (e_value=1e-69) U3 small nucleolar RNA-associated protein, putative [Ricinus communis];; (*SWP) sp|Q8S1Z1|UTP11_ORYSJ (e_value=4e-63) Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2;; (*TAIR) AT3G60360.1 (e_value=6e-58) | Symbols: EDA14, UTP11 | embryo sac development arrest 14 | chr3:22312477-22314002 REVERSE LENGTH=228;; (*ITAG) Solyc10g079430.1.1 (e_value=5e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60285916-60289754 transcript_region:SL2.40ch10:60285916..60289754+ go_terms:GO:0030515,GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 11 (AHRD V1 ***- B6TNQ8_MAIZE); contains Interpro domain(s) IPR007144 Small-subunit processome, Utp11 "; GO:0030515,GO:0005515 NbS00020412g0004.1 protein AED:0.54 eAED:0.54 QI:3|0|0|0.5|1|1|2|0|40 NbS00060930g0005.1 protein AED:0.06 eAED:0.06 QI:9|1|0.66|1|0.5|0.66|3|0|430; (*GB) gi|359484332|ref|XP_002280341.2| (e_value=3e-103) PREDICTED: uncharacterized protein LOC100245766 [Vitis vinifera];; (*TAIR) AT3G16490.1 (e_value=5e-54) | Symbols: IQD26 | IQ-domain 26 | chr3:5603962-5605489 REVERSE LENGTH=389;; (*ITAG) Solyc12g008520.1.1 (e_value=4e-150) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1931971-1934807 transcript_region:SL2.40ch12:1931971..1934807+ functional_description:"Calmodulin-binding family protein (AHRD V1 **-- Q9ZU28_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00055453g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.85|0.85|0.83|0.85|7|431|264; (*GB) gi|359481083|ref|XP_002265170.2| (e_value=1e-117) PREDICTED: uncharacterized protein LOC100246079 [Vitis vinifera];; (*TAIR) AT5G32450.1 (e_value=1e-112) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:12079707-12081317 FORWARD LENGTH=267;; (*ITAG) Solyc10g076890.1.1 (e_value=9e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59189548-59194122 transcript_region:SL2.40ch10:59189548..59194122+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7MHK9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00022677g0026.1 protein AED:0.10 eAED:0.10 QI:266|0.78|0.73|1|0.78|0.8|15|397|702; (*GB) gi|29289943|gb|AAO67719.1| (e_value=0.0) sucrose synthase [Solanum tuberosum];; (*SWP) sp|O24301|SUS2_PEA (e_value=0.0) Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1;; (*TAIR) AT4G02280.1 (e_value=0.0) | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4:995166-998719 FORWARD LENGTH=809;; (*ITAG) Solyc09g098590.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67652867-67658231 transcript_region:SL2.40ch09:67652867..67658231+ go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q84T18_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00022677g0027.1 protein AED:0.16 eAED:0.16 QI:4|0.8|0.83|1|1|1|6|354|268; (*GB) gi|83284003|gb|ABC01909.1| (e_value=7e-114) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=8e-107) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=6e-108) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=5e-117) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00022677g0029.1 protein AED:0.01 eAED:0.01 QI:153|1|1|1|0.33|0.28|7|357|231; (*GB) gi|359489811|ref|XP_002275559.2| (e_value=1e-120) PREDICTED: uncharacterized protein LOC100262014 [Vitis vinifera];; (*SWP) sp|Q9EQI8|RM46_MOUSE (e_value=1e-16) 39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46 PE=2 SV=1;; (*TAIR) AT1G14620.1 (e_value=2e-111) | Symbols: DECOY | decoy | chr1:5014948-5016501 REVERSE LENGTH=233;; (*ITAG) Solyc09g075370.2.1 (e_value=2e-156) genomic_reference:SL2.40ch09 gene_region:62589136-62593044 transcript_region:SL2.40ch09:62589136..62593044+ functional_description:"Mitochondrial ribosomal protein L46 (AHRD V1 ***- B0X635_CULQU)"; NbS00022677g0031.1 protein AED:0.07 eAED:0.07 QI:55|1|1|1|0|0.5|2|189|566; (*GB) gi|255564232|ref|XP_002523113.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|O81301|PME40_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1;; (*TAIR) AT4G02320.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518;; (*ITAG) Solyc09g075350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62565231-62569848 transcript_region:SL2.40ch09:62565231..62569848+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00022677g0023.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|0.71|0.87|8|407|488; (*GB) gi|350539021|ref|NP_001234882.1| (e_value=0.0) endo-1,4-beta-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|O81416|GUN17_ARATH (e_value=0.0) Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1;; (*TAIR) AT4G02290.1 (e_value=0.0) | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B13 | chr4:1002654-1005125 REVERSE LENGTH=516;; (*ITAG) Solyc09g075360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62584484-62587919 transcript_region:SL2.40ch09:62584484..62587919+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00022677g0006.1 protein AED:0.26 eAED:0.30 QI:436|0.71|0.86|1|0.85|0.81|22|0|796; (*GB) gi|30268666|dbj|BAC76004.1| (e_value=0.0) RelA-SpoT like protein RSH1 [Nicotiana tabacum];; (*SWP) sp|O54408|RELA_BACSU (e_value=1e-67) GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3;; (*TAIR) AT4G02260.2 (e_value=0.0) | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 | chr4:985451-991178 FORWARD LENGTH=883;; (*ITAG) Solyc09g098580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67638253-67650510 transcript_region:SL2.40ch09:67638253..67650510+ go_terms:GO:0008728 functional_description:"GTP pyrophosphokinase (AHRD V1 *-** Q3A9Z8_CARHZ); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00003884g0012.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|1|1|2|596|291; (*GB) gi|118484962|gb|ABK94346.1| (e_value=6e-78) unknown [Populus trichocarpa];; (*SWP) sp|Q6PFX9|TNKS1_MOUSE (e_value=8e-20) Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1;; (*TAIR) AT4G19150.1 (e_value=9e-67) | Symbols: | Ankyrin repeat family protein | chr4:10471578-10472677 REVERSE LENGTH=243;; (*ITAG) Solyc08g005520.2.1 (e_value=2e-124) genomic_reference:SL2.40ch08 gene_region:386155-390404 transcript_region:SL2.40ch08:386155..390404- go_terms:GO:0042803 functional_description:"Ankyrin repeat domain protein (AHRD V1 *-*- B3CPL5_WOLPP); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00024966g0005.1 protein AED:0.27 eAED:0.27 QI:182|0.66|0.75|1|0.66|1|4|1|130; (*GB) gi|147766282|emb|CAN74459.1| (e_value=9e-68) hypothetical protein VITISV_012710 [Vitis vinifera];; (*SWP) sp|Q8GW46|YAB5_ARATH (e_value=2e-47) Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1;; (*TAIR) AT2G26580.2 (e_value=2e-48) | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164;; (*ITAG) Solyc07g008180.2.1 (e_value=4e-72) genomic_reference:SL2.40ch07 gene_region:2916878-2921216 transcript_region:SL2.40ch07:2916878..2921216+ go_terms:GO:0005515,GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00021016g0003.1 protein AED:0.03 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|526; (*GB) gi|225445840|ref|XP_002277887.1| (e_value=3e-152) PREDICTED: homoserine kinase-like [Vitis vinifera];; (*SWP) sp|B3QWX6|KHSE_CHLT3 (e_value=1e-48) Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=4e-137) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00021016g0011.1 protein AED:0.15 eAED:0.16 QI:0|0.66|0.5|1|0.66|0.5|4|0|277; (*GB) gi|374532843|gb|AEZ53298.1| (e_value=2e-169) tetraketide alpha-pyrone reductase 1 [Nicotiana tabacum];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=2e-48) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT4G35420.1 (e_value=4e-122) | Symbols: DRL1 | dihydroflavonol 4-reductase-like1 | chr4:16834091-16835611 REVERSE LENGTH=326;; (*ITAG) Solyc04g008780.2.1 (e_value=2e-150) genomic_reference:SL2.40ch04 gene_region:2420696-2423766 transcript_region:SL2.40ch04:2420696..2423766+ go_terms:GO:0004090 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 **** D7MD06_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004090 NbS00021016g0010.1 protein AED:0.25 eAED:0.25 QI:95|1|1|1|1|1|3|646|28 NbS00042250g0024.1 protein AED:0.08 eAED:0.08 QI:252|0.75|0.8|1|0.5|0.6|5|351|220; (*GB) gi|225447504|ref|XP_002265343.1| (e_value=6e-98) PREDICTED: uncharacterized protein LOC100245903 isoform 2 [Vitis vinifera];; (*SWP) sp|A7SXK3|TMED_NEMVE (e_value=1e-12) Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1;; (*TAIR) AT3G07680.1 (e_value=1e-97) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g015740.1.1 (e_value=3e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5718806-5721319 transcript_region:SL2.40ch12:5718806..5721319- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00042250g0022.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.71|0.85|1|1|7|15|385; (*GB) gi|255563586|ref|XP_002522795.1| (e_value=0.0) organic anion transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=2e-32) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT5G55950.1 (e_value=0.0) | Symbols: | Nucleotide/sugar transporter family protein | chr5:22658411-22660253 REVERSE LENGTH=398;; (*ITAG) Solyc12g015850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5829717-5832172 transcript_region:SL2.40ch12:5829717..5832172+ functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00042250g0018.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|0.85|1|8|338|398; (*GB) gi|225461965|ref|XP_002270559.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Vitis vinifera];; (*SWP) sp|Q54SN4|RPAC1_DICDI (e_value=3e-96) DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1;; (*TAIR) AT1G60620.1 (e_value=0.0) | Symbols: ATRPAC43, RPAC43 | RNA polymerase I subunit 43 | chr1:22331225-22333370 FORWARD LENGTH=385;; (*ITAG) Solyc12g015780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5775862-5780527 transcript_region:SL2.40ch12:5775862..5780527- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit D (AHRD V1 ***- A8B9C8_GIALA); contains Interpro domain(s) IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type "; GO:0006350 NbS00042250g0025.1 protein AED:0.10 eAED:0.10 QI:510|0.57|0.5|1|0.42|0.62|8|0|631; (*GB) gi|71493366|gb|AAZ32787.1| (e_value=0.0) cellulose synthase-like protein CslE [Nicotiana tabacum];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=0.0) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT1G55850.1 (e_value=4e-180) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc12g015770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5754505-5759974 transcript_region:SL2.40ch12:5754505..5759974- go_terms:GO:0016020 functional_description:"Cellulose synthase (AHRD V1 ***- Q2HT16_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00042250g0026.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.28|1|0|0|7|701|974; (*GB) gi|359493281|ref|XP_002272603.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like [Vitis vinifera];; (*SWP) sp|Q9LVQ5|PP432_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2;; (*TAIR) AT5G55840.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22598038-22601688 FORWARD LENGTH=1136;; (*ITAG) Solyc03g118280.1.1 (e_value=6e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00042250g0021.1 protein AED:0.41 eAED:0.41 QI:58|0.5|0.66|1|0|0.33|3|316|77; (*GB) gi|359485775|ref|XP_002267619.2| (e_value=3e-34) PREDICTED: uncharacterized protein LOC100254625 [Vitis vinifera];; (*TAIR) AT5G55850.3 (e_value=5e-31) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604850 FORWARD LENGTH=95;; (*ITAG) Solyc07g065640.2.1 (e_value=4e-41) genomic_reference:SL2.40ch07 gene_region:64560188-64564962 transcript_region:SL2.40ch07:64560188..64564962+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00008289g0003.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|4|276|353; (*GB) gi|225470583|ref|XP_002273705.1| (e_value=3e-169) PREDICTED: F-box protein At1g70590 [Vitis vinifera];; (*SWP) sp|Q94C27|FB84_ARATH (e_value=2e-137) F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1;; (*TAIR) AT1G70590.1 (e_value=1e-138) | Symbols: | F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351;; (*ITAG) Solyc05g013410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6480260-6484488 transcript_region:SL2.40ch05:6480260..6484488+ go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *-*- A0L961_MAGSM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011359g0015.1 protein AED:0.05 eAED:0.05 QI:25|1|1|1|0.85|0.81|22|380|1512; (*GB) gi|296081735|emb|CBI20740.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5N870|DCL3A_ORYSJ (e_value=0.0) Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1;; (*TAIR) AT3G43920.2 (e_value=0.0) | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:15753548-15760830 FORWARD LENGTH=1580;; (*ITAG) Solyc08g067210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53434811-53463111 transcript_region:SL2.40ch08:53434811..53463111+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 2 (AHRD V1 *-*- RTL2_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515,GO:0003725 NbS00011359g0013.1 protein AED:0.06 eAED:0.06 QI:192|0.75|1|1|1|1|5|76|185; (*GB) gi|417063|sp|Q03416.1|GLOB_TOBAC (e_value=1e-122) RecName: Full=Floral homeotic protein GLOBOSA;; (*SWP) sp|Q03416|GLOB_TOBAC (e_value=4e-124) Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1;; (*TAIR) AT5G20240.1 (e_value=6e-66) | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208;; (*ITAG) Solyc08g067230.2.1 (e_value=5e-114) genomic_reference:SL2.40ch08 gene_region:53468785-53473402 transcript_region:SL2.40ch08:53468785..53473402+ go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- A7LK41_POPDE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00011359g0008.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|1762947|gb|AAC49976.1| (e_value=6e-54) ORF; able to induce HR-like lesions [Nicotiana tabacum];; (*TAIR) AT5G64510.1 (e_value=2e-33) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=4e-53) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00011359g0017.1 protein AED:0.18 eAED:0.21 QI:457|0.9|0.81|1|0.5|0.54|11|279|571; (*GB) gi|147855443|emb|CAN79610.1| (e_value=0.0) hypothetical protein VITISV_022337 [Vitis vinifera];; (*TAIR) AT2G26270.1 (e_value=9e-153) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187659 FORWARD LENGTH=470;; (*ITAG) Solyc08g067240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53474309-53480890 transcript_region:SL2.40ch08:53474309..53480890- go_terms:GO:0005622 functional_description:"DNA topoisomerase 2-binding protein 1 (AHRD V1 *--- TOPB1_MOUSE); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00025260g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|1|1|4|0|460; (*GB) gi|47219165|emb|CAG01828.1| (e_value=3e-173) unnamed protein product [Tetraodon nigroviridis];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=4e-135) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=3e-136) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=4e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00038541g0004.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|462; (*GB) gi|225459856|ref|XP_002285930.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262535 [Vitis vinifera];; (*TAIR) AT1G76250.1 (e_value=2e-179) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:28606561-28608942 REVERSE LENGTH=434;; (*ITAG) Solyc04g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63595005-63598411 transcript_region:SL2.40ch04:63595005..63598411- functional_description:"AT1G76250-like protein (Fragment) (AHRD V1 *-*- D6PP03_9BRAS)"; NbS00005687g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|1103; (*GB) gi|255554244|ref|XP_002518162.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LVP0|Y5639_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1;; (*TAIR) AT5G63930.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25583006-25586392 FORWARD LENGTH=1102;; (*ITAG) Solyc09g091260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65908750-65912989 transcript_region:SL2.40ch09:65908750..65912989+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00035413g0002.1 protein AED:0.10 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|0|371; (*GB) gi|224094935|ref|XP_002310297.1| (e_value=1e-173) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=4e-102) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT2G18060.1 (e_value=3e-155) | Symbols: VND1, ANAC037 | vascular related NAC-domain protein 1 | chr2:7848399-7850303 REVERSE LENGTH=365;; (*ITAG) Solyc02g084350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42041409-42043859 transcript_region:SL2.40ch02:42041409..42043859- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HFJ5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00035413g0008.1 protein AED:0.18 eAED:0.30 QI:24|0|0|1|0|0|3|0|207; (*ITAG) Solyc04g074620.1.1 (e_value=6e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00015088g0006.1 protein AED:0.28 eAED:0.32 QI:0|0|0|1|1|1|2|0|239; (*GB) gi|225456335|ref|XP_002280125.1| (e_value=4e-93) PREDICTED: uncharacterized protein LOC100249081 [Vitis vinifera];; (*TAIR) AT4G22980.1 (e_value=1e-13) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G51920.1); Has 520 Blast hits to 468 proteins in 130 species: Archae - 5; Bacteria - 23; Metazoa - 99; Fungi - 131; Plants - 231; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr4:12043974-12045653 REVERSE LENGTH=559;; (*ITAG) Solyc05g015480.2.1 (e_value=1e-120) genomic_reference:SL2.40ch05 gene_region:10696907-10698635 transcript_region:SL2.40ch05:10696907..10698635+ functional_description:"Cysteine desulfurase (AHRD V1 *-*- C1GS28_PARBA)"; NbS00015088g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|147780251|emb|CAN65744.1| (e_value=6e-29) hypothetical protein VITISV_037761 [Vitis vinifera];; (*TAIR) AT1G09520.1 (e_value=4e-18) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:3071248-3072030 REVERSE LENGTH=260;; (*ITAG) Solyc03g114270.1.1 (e_value=4e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58347361-58347993 transcript_region:SL2.40ch03:58347361..58347993+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015088g0014.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|187; (*GB) gi|225425408|ref|XP_002277578.1| (e_value=2e-44) PREDICTED: uncharacterized GPI-anchored protein At1g27950 [Vitis vinifera];; (*SWP) sp|Q9C7F7|UGPI5_ARATH (e_value=5e-42) Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1;; (*TAIR) AT1G27950.1 (e_value=4e-43) | Symbols: LTPG1 | glycosylphosphatidylinositol-anchored lipid protein transfer 1 | chr1:9740740-9741991 FORWARD LENGTH=193;; (*ITAG) Solyc05g015490.2.1 (e_value=2e-84) genomic_reference:SL2.40ch05 gene_region:10701999-10704689 transcript_region:SL2.40ch05:10701999..10704689- functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q700A6_CICAR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00021919g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|267; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*TAIR) AT2G23810.1 (e_value=1e-53) | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352 REVERSE LENGTH=273;; (*ITAG) Solyc06g069320.2.1 (e_value=9e-132) genomic_reference:SL2.40ch06 gene_region:39465510-39467895 transcript_region:SL2.40ch06:39465510..39467895- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00029569g0007.1 protein AED:0.10 eAED:0.11 QI:0|1|0|1|1|1|2|0|499; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q50EK4|C75A1_PINTA (e_value=2e-121) Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1;; (*TAIR) AT3G48310.1 (e_value=3e-111) | Symbols: CYP71A22 | cytochrome P450, family 71, subfamily A, polypeptide 22 | chr3:17888192-17889749 FORWARD LENGTH=490;; (*ITAG) Solyc04g011680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00029569g0008.1 protein AED:0.23 eAED:0.24 QI:201|0.81|0.66|1|0.45|0.5|12|0|893; (*GB) gi|356542573|ref|XP_003539741.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100801880 [Glycine max];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=2e-36) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=6e-97) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc04g049840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42788007-42797456 transcript_region:SL2.40ch04:42788007..42797456- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q5BKS6_XENTR); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00008988g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|32454712|gb|AAP83137.1| (e_value=8e-76) lipoxygenase, partial [Nicotiana attenuata];; (*SWP) sp|O24370|LOX21_SOLTU (e_value=3e-67) Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1;; (*TAIR) AT3G45140.1 (e_value=5e-49) | Symbols: LOX2, ATLOX2 | lipoxygenase 2 | chr3:16525437-16529233 FORWARD LENGTH=896;; (*ITAG) Solyc01g006560.2.1 (e_value=3e-69) genomic_reference:SL2.40ch01 gene_region:1128815-1139705 transcript_region:SL2.40ch01:1128815..1139705- go_terms:GO:0005515,GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** C0KKU8_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0005515,GO:0016165 NbS00008988g0005.1 protein AED:0.26 eAED:0.28 QI:0|0|0|0.75|1|1|4|0|96; (*GB) gi|363806792|ref|NP_001242027.1| (e_value=1e-50) uncharacterized protein LOC100803623 [Glycine max];; (*SWP) sp|P49200|RS201_ARATH (e_value=2e-47) 40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2;; (*TAIR) AT5G62300.2 (e_value=2e-48) | Symbols: | Ribosomal protein S10p/S20e family protein | chr5:25021388-25022235 REVERSE LENGTH=124;; (*ITAG) Solyc01g096590.2.1 (e_value=1e-48) genomic_reference:SL2.40ch01 gene_region:79418198-79420477 transcript_region:SL2.40ch01:79418198..79420477- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10 (AHRD V1 ***- RS10_CAMFF); contains Interpro domain(s) IPR005729 Ribosomal protein S10, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00008988g0011.1 protein AED:0.13 eAED:0.23 QI:0|0|0|1|0|0|3|0|402; (*GB) gi|109676362|gb|ABG37663.1| (e_value=8e-50) CCHC-type integrase [Populus trichocarpa];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=1e-38) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=5e-39) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006520.2.1 (e_value=7e-77) genomic_reference:SL2.40ch01 gene_region:1099482-1102806 transcript_region:SL2.40ch01:1099482..1102806+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00023314g0012.1 protein AED:0.08 eAED:0.08 QI:324|1|1|1|0.9|1|11|785|552; (*GB) gi|8439543|gb|AAF74982.1|AF082892_1 (e_value=0.0) cystathionine gamma-synthase isoform 2 [Solanum tuberosum];; (*SWP) sp|P55217|METB_ARATH (e_value=0.0) Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3;; (*TAIR) AT3G01120.1 (e_value=0.0) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00023314g0010.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|0|216; (*GB) gi|225452883|ref|XP_002283884.1| (e_value=9e-112) PREDICTED: transmembrane emp24 domain-containing protein bai isoform 1 [Vitis vinifera];; (*SWP) sp|O35587|TMEDA_MESAU (e_value=3e-28) Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=1 SV=1;; (*TAIR) AT1G14010.1 (e_value=2e-97) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:4800385-4801790 REVERSE LENGTH=212;; (*ITAG) Solyc05g013130.2.1 (e_value=4e-104) genomic_reference:SL2.40ch05 gene_region:6223649-6227060 transcript_region:SL2.40ch05:6223649..6227060- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbC25455602g0003.1 protein AED:0.05 eAED:0.05 QI:253|1|1|1|1|1|3|0|168; (*GB) gi|255582658|ref|XP_002532108.1| (e_value=5e-92) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G01360.1 (e_value=4e-84) | Symbols: TBL3 | Plant protein of unknown function (DUF828) | chr5:147608-149316 REVERSE LENGTH=434;; (*ITAG) Solyc09g005630.2.1 (e_value=7e-113) genomic_reference:SL2.40ch09 gene_region:435347-437282 transcript_region:SL2.40ch09:435347..437282+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00022152g0003.1 protein AED:0.07 eAED:0.07 QI:48|1|0.33|1|1|1|3|0|200; (*GB) gi|224125852|ref|XP_002329733.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53345.1 (e_value=1e-76) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). | chr1:19902561-19903538 FORWARD LENGTH=325;; (*ITAG) Solyc03g098180.2.1 (e_value=1e-123) genomic_reference:SL2.40ch03 gene_region:53969222-53976124 transcript_region:SL2.40ch03:53969222..53976124+ go_terms:GO:0006468 functional_description:"Phosphoesterase dhha1 (AHRD V1 ***- A2A059_9BACT)"; GO:0006468 NbS00007314g0014.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.25|1|1|1|4|0|416; (*GB) gi|1170508|sp|P41381.1|IF4A8_TOBAC (e_value=0.0) RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8; AltName: Full=ATP-dependent RNA helicase eIF4A-8;; (*SWP) sp|P41381|IF4A8_TOBAC (e_value=0.0) Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=0.0) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc06g062800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00007314g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|255560727|ref|XP_002521377.1| (e_value=3e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G19460.1 (e_value=1e-24) | Symbols: | Protein of unknown function (DUF3511) | chr2:8431581-8431931 FORWARD LENGTH=116;; (*ITAG) Solyc12g049210.1.1 (e_value=3e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46070245-46070568 transcript_region:SL2.40ch12:46070245..46070568- functional_description:"Unknown Protein (AHRD V1)"; NbS00007314g0004.1 protein AED:0.06 eAED:0.06 QI:958|1|0.5|1|0|0|2|0|432; (*GB) gi|225442223|ref|XP_002277829.1| (e_value=0.0) PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=0.0) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=0.0) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc06g062810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36018591-36019889 transcript_region:SL2.40ch06:36018591..36019889+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00007314g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.87|0.77|1|1|1|9|0|1196; (*GB) gi|359482803|ref|XP_003632843.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 4-like [Vitis vinifera];; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2;; (*TAIR) AT1G17500.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023201 FORWARD LENGTH=1216;; (*ITAG) Solyc06g062780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35995146-36001096 transcript_region:SL2.40ch06:35995146..36001096+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00007314g0015.1 protein AED:0.22 eAED:0.22 QI:414|1|1|1|0.84|0.85|14|450|465; (*GB) gi|359482807|ref|XP_002277513.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=0.0) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc06g062790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36002715-36009438 transcript_region:SL2.40ch06:36002715..36009438+ go_terms:GO:0006468 functional_description:"Casein kinase I-like (AHRD V1 ***- Q8LR51_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007314g0008.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|65 NbS00011129g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|147787228|emb|CAN69131.1| (e_value=4e-54) hypothetical protein VITISV_012047 [Vitis vinifera];; (*TAIR) AT4G03965.1 (e_value=1e-45) | Symbols: | RING/U-box superfamily protein | chr4:1889576-1890205 FORWARD LENGTH=209;; (*ITAG) Solyc02g081180.1.1 (e_value=5e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39818420-39819031 transcript_region:SL2.40ch02:39818420..39819031+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *--- D7MVE2_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00011129g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|87 NbS00011129g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|321; (*GB) gi|22261807|sp|P80471.2|LIPC_SOLTU (e_value=1e-170) RecName: Full=Light-induced protein, chloroplastic; AltName: Full=Drought-induced stress protein CDSP-34; Flags: Precursor;; (*SWP) sp|P80471|LIPC_SOLTU (e_value=3e-172) Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT4G04020.1 (e_value=1e-109) | Symbols: FIB | fibrillin | chr4:1932161-1933546 FORWARD LENGTH=318;; (*ITAG) Solyc02g081170.2.1 (e_value=1e-169) genomic_reference:SL2.40ch02 gene_region:39810752-39812645 transcript_region:SL2.40ch02:39810752..39812645- go_terms:GO:0005515 functional_description:"Plastid-lipid-associated protein, chloroplastic (AHRD V1 **-- PAP_CITUN); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0005515 NbS00004658g0006.1 protein AED:0.42 eAED:0.48 QI:0|0|0|0.75|1|1|4|0|96; (*ITAG) Solyc05g023850.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29603236-29604099 transcript_region:SL2.40ch05:29603236..29604099- functional_description:"Gag-pol polyprotein (AHRD V1 ***- Q710T7_POPDE)"; NbS00004658g0010.1 protein AED:0.11 eAED:0.11 QI:82|1|0.75|1|1|1|4|0|296; (*GB) gi|225461498|ref|XP_002285093.1| (e_value=3e-173) PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Vitis vinifera];; (*SWP) sp|Q45223|HBD_BRAJA (e_value=4e-109) 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum (strain USDA 110) GN=hbdA PE=3 SV=1;; (*TAIR) AT3G15290.1 (e_value=1e-168) | Symbols: | 3-hydroxyacyl-CoA dehydrogenase family protein | chr3:5145054-5146613 FORWARD LENGTH=294;; (*ITAG) Solyc07g063010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62844553-62847679 transcript_region:SL2.40ch07:62844553..62847679+ go_terms:GO:0042803 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 **-- FADB_ACIBC); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0042803 NbS00004658g0001.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|808; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=2e-46) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=3e-41) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=5e-43) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc07g063020.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62847937-62851197 transcript_region:SL2.40ch07:62847937..62851197+ go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *-*- Q4KR07_SOLPE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00016031g0010.1 protein AED:0.12 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|316; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=9e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=6e-34) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT2G30830.1 (e_value=1e-37) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:13132707-13134284 REVERSE LENGTH=358;; (*ITAG) Solyc06g069900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00016031g0009.1 protein AED:0.31 eAED:0.33 QI:645|0.5|0.66|1|0.87|0.88|9|290|86; (*ITAG) Solyc06g069890.2.1 (e_value=3e-14) genomic_reference:SL2.40ch06 gene_region:39903145-39908428 transcript_region:SL2.40ch06:39903145..39908428+ go_terms:GO:0042393 functional_description:"Nucleosome assembly protein family (AHRD V1 **-- A9RDJ7_PHYPA); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0042393 NbS00016031g0011.1 protein AED:0.67 eAED:0.93 QI:0|0|0|0.66|1|1|3|0|63 NbS00018423g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|225455838|ref|XP_002273242.1| (e_value=2e-29) PREDICTED: oleosin 16 kDa [Vitis vinifera];; (*TAIR) AT3G18570.1 (e_value=5e-11) | Symbols: | Oleosin family protein | chr3:6396072-6396572 REVERSE LENGTH=166;; (*ITAG) Solyc03g119820.1.1 (e_value=1e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62444432-62444929 transcript_region:SL2.40ch03:62444432..62444929- go_terms:GO:0016021 functional_description:"Oleosin Bn-V (AHRD V1 ***- B6UIA7_MAIZE); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00022894g0007.1 protein AED:0.10 eAED:0.10 QI:123|0|0.5|1|0|0.5|2|413|285 NbS00022894g0006.1 protein AED:0.56 eAED:1.00 QI:0|0|0|1|0|0|2|0|65 NbS00014000g0002.1 protein AED:0.18 eAED:0.62 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|255585387|ref|XP_002533389.1| (e_value=2e-64) pheophorbide A oxygenase, putative [Ricinus communis];; (*SWP) sp|Q8W496|PTC52_ARATH (e_value=2e-58) Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1;; (*TAIR) AT4G25650.1 (e_value=1e-59) | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | chr4:13081021-13083153 REVERSE LENGTH=536;; (*ITAG) Solyc04g040160.2.1 (e_value=6e-95) genomic_reference:SL2.40ch04 gene_region:31076099-31081223 transcript_region:SL2.40ch04:31076099..31081223- go_terms:GO:0051536,GO:0032441 functional_description:"Pheophorbide a oxygenase (AHRD V1 **-* B6ST74_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0051536,GO:0032441 NbS00010278g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|457; (*GB) gi|30016900|gb|AAP04000.1| (e_value=9e-156) EIL4 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=2e-53) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=2e-54) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc06g073730.1.1 (e_value=7e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41879453-41881270 transcript_region:SL2.40ch06:41879453..41881270- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00010278g0010.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|3|0|441; (*GB) gi|30016900|gb|AAP04000.1| (e_value=2e-173) EIL4 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=1e-39) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=9e-41) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc06g073720.1.1 (e_value=8e-151) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41868757-41870589 transcript_region:SL2.40ch06:41868757..41870589- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00059640g0003.1 protein AED:0.26 eAED:0.26 QI:100|1|1|1|1|1|2|0|95; (*GB) gi|75298577|sp|Q852S5.1|NDK2_TOBAC (e_value=5e-24) RecName: Full=Nucleoside diphosphate kinase 2, chloroplastic; AltName: Full=Nucleoside diphosphate kinase II; Short=NDK II; Short=NDP kinase II; Short=NDPK II; Flags: Precursor;; (*SWP) sp|Q852S5|NDK2_TOBAC (e_value=1e-25) Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1;; (*TAIR) AT5G63310.1 (e_value=1e-13) | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2 | nucleoside diphosphate kinase 2 | chr5:25372122-25373838 REVERSE LENGTH=231;; (*ITAG) Solyc06g071960.2.1 (e_value=3e-32) genomic_reference:SL2.40ch06 gene_region:40715662-40718800 transcript_region:SL2.40ch06:40715662..40718800- go_terms:GO:0004550 functional_description:"Nucleoside diphosphate kinase (AHRD V1 **** B9RAM1_RICCO); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0004550 NbS00000011g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.81|0.75|0.91|0.90|0.83|12|256|790; (*GB) gi|225444363|ref|XP_002266688.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=0.0) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=0.0) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc02g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39110708-39114667 transcript_region:SL2.40ch02:39110708..39114667+ go_terms:GO:0043565 functional_description:"Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00004648g0011.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0.5|2|0|401; (*GB) gi|225442665|ref|XP_002279835.1| (e_value=6e-113) PREDICTED: uncharacterized protein LOC100244623 [Vitis vinifera];; (*TAIR) AT3G24490.1 (e_value=1e-65) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr3:8911022-8912023 FORWARD LENGTH=333;; (*ITAG) Solyc12g043090.1.1 (e_value=2e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44199930-44201057 transcript_region:SL2.40ch12:44199930..44201057+ functional_description:"Transcription factor (AHRD V1 *--- D7L9U5_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00004648g0005.1 protein AED:0.21 eAED:0.21 QI:340|1|0.8|1|0|0|5|1788|507; (*GB) gi|297743291|emb|CBI36158.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LW84|PP236_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1;; (*TAIR) AT3G16010.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:5434142-5436244 FORWARD LENGTH=642;; (*ITAG) Solyc12g043100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44204386-44207375 transcript_region:SL2.40ch12:44204386..44207375- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4Z8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004648g0101.1 protein AED:0.49 eAED:0.48 QI:0|0|0|1|1|1|2|0|70 NbS00004648g0102.1 protein AED:0.20 eAED:0.26 QI:0|0|0|0.85|0|0|7|0|425 NbS00009450g0002.1 protein AED:0.05 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|294; (*GB) gi|255572937|ref|XP_002527399.1| (e_value=4e-42) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LRW1|LBD22_ARATH (e_value=3e-38) LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1;; (*TAIR) AT3G13850.1 (e_value=3e-39) | Symbols: LBD22 | LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268;; (*ITAG) Solyc08g065130.1.1 (e_value=4e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:50007755-50008788 transcript_region:SL2.40ch08:50007755..50008788+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00009450g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|447; (*GB) gi|129593742|gb|ABO31111.1| (e_value=0.0) sphingolipid delta-8 desaturase [Nicotiana tabacum];; (*SWP) sp|A4IFP3|FADS3_BOVIN (e_value=3e-46) Fatty acid desaturase 3 OS=Bos taurus GN=FADS3 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00005731g0002.1 protein AED:0.09 eAED:0.30 QI:0|0|0|1|1|1|2|0|119; (*GB) gi|350535879|ref|NP_001233962.1| (e_value=5e-15) S-protein homologue precursor [Solanum lycopersicum];; (*ITAG) Solyc09g091350.1.1 (e_value=5e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:65969473-65969892 transcript_region:SL2.40ch09:65969473..65969892- functional_description:"Self-incompatibility protein-like protein (AHRD V1 **-- Q9LSN9_ARATH); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00005731g0003.1 protein AED:0.37 eAED:0.77 QI:0|0|0|1|0|0|2|0|60 NbS00048464g0006.1 protein AED:0.13 eAED:0.14 QI:91|0.5|0.53|0.8|0.35|0.53|15|242|1023; (*GB) gi|225444565|ref|XP_002277136.1| (e_value=0.0) PREDICTED: dedicator of cytokinesis protein 11 [Vitis vinifera];; (*SWP) sp|Q5JSL3|DOC11_HUMAN (e_value=1e-42) Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1 SV=2;; (*TAIR) AT4G16340.1 (e_value=0.0) | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830;; (*ITAG) Solyc08g016050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6509200-6527218 transcript_region:SL2.40ch08:6509200..6527218- go_terms:GO:0042802 functional_description:"Dedicator of cytokinesis family protein (AHRD V1 ***- A8P5S7_BRUMA); contains Interpro domain(s) IPR010703 Dedicator of cytokinesis "; GO:0042802 NbS00046635g0003.1 protein AED:0.00 eAED:0.00 QI:214|1|1|1|1|1|2|774|99; (*ITAG) Solyc04g074110.2.1 (e_value=1e-15) genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00047713g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.57|0.71|0.33|0.28|7|432|159; (*GB) gi|357503753|ref|XP_003622165.1| (e_value=3e-48) ABC transporter I family member [Medicago truncatula];; (*SWP) sp|Q8LEF6|AB11I_ARATH (e_value=8e-42) ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1;; (*TAIR) AT5G14100.1 (e_value=6e-43) | Symbols: ATNAP14, NAP14 | non-intrinsic ABC protein 14 | chr5:4549706-4551632 REVERSE LENGTH=278;; (*ITAG) Solyc02g068180.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:32778437-32785527 transcript_region:SL2.40ch02:32778437..32785527+ go_terms:GO:0015421 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- D4QI89_ENTFC); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015421 NbS00019140g0002.1 protein AED:0.21 eAED:0.21 QI:98|1|1|1|0.62|0.44|9|361|818; (*GB) gi|350534908|ref|NP_001233910.1| (e_value=0.0) beta-D-xylosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|A5JTQ3|XYL2_MEDSV (e_value=0.0) Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1;; (*TAIR) AT5G64570.1 (e_value=0.0) | Symbols: XYL4, ATBXL4 | beta-D-xylosidase 4 | chr5:25810227-25813309 REVERSE LENGTH=784;; (*ITAG) Solyc01g104950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85031292-85035396 transcript_region:SL2.40ch01:85031292..85035396- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0046556 NbS00001894g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|290; (*GB) gi|356509763|ref|XP_003523615.1| (e_value=8e-113) PREDICTED: uncharacterized protein LOC100777591 [Glycine max];; (*TAIR) AT5G43120.1 (e_value=2e-99) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:17312602-17314368 FORWARD LENGTH=588;; (*ITAG) Solyc04g078170.1.1 (e_value=5e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001894g0011.1 protein AED:0.28 eAED:0.28 QI:236|0.78|0.8|1|0.92|0.93|15|265|719; (*GB) gi|359489673|ref|XP_003633963.1| (e_value=0.0) PREDICTED: golgin candidate 4-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8VYU6|GOGC4_ARATH (e_value=8e-152) Golgin candidate 4 OS=Arabidopsis thaliana GN=GC4 PE=2 SV=1;; (*TAIR) AT2G46180.1 (e_value=6e-153) | Symbols: GC4 | golgin candidate 4 | chr2:18967482-18971260 REVERSE LENGTH=725;; (*ITAG) Solyc01g095210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78309617-78322349 transcript_region:SL2.40ch01:78309617..78322349- go_terms:GO:0005515 functional_description:"Golgin candidate 4 (AHRD V1 **-- GOGC4_ARATH)"; GO:0005515 NbS00001894g0006.1 protein AED:0.39 eAED:0.45 QI:0|0|0|0.66|1|1|3|0|264; (*GB) gi|224074227|ref|XP_002304309.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99614|TTC1_HUMAN (e_value=6e-12) Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1;; (*TAIR) AT3G50030.1 (e_value=6e-54) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr3:18546490-18548132 REVERSE LENGTH=501;; (*ITAG) Solyc04g078170.1.1 (e_value=6e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001894g0010.1 protein AED:0.20 eAED:0.21 QI:140|0.5|0.4|1|1|1|5|0|259; (*GB) gi|192910708|gb|ACF06462.1| (e_value=2e-93) 24 kDa seed maturation protein [Elaeis guineensis];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=2e-81) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=2e-82) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc01g095200.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:78306398-78309475 transcript_region:SL2.40ch01:78306398..78309475+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00005629g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|335; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=1e-143) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=3e-145) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=8e-108) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=4e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00018339g0012.1 protein AED:0.33 eAED:0.33 QI:0|1|0.75|1|1|1|4|0|161; (*GB) gi|224138868|ref|XP_002326710.1| (e_value=1e-95) precursor of carboxylase h-protein 4, glycine decarboxylase complex [Populus trichocarpa];; (*SWP) sp|Q39732|GCSH_FLAAN (e_value=9e-94) Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1;; (*TAIR) AT1G32470.1 (e_value=2e-88) | Symbols: | Single hybrid motif superfamily protein | chr1:11739479-11740246 REVERSE LENGTH=166;; (*ITAG) Solyc06g061070.2.1 (e_value=1e-108) genomic_reference:SL2.40ch06 gene_region:35488560-35490227 transcript_region:SL2.40ch06:35488560..35490227- go_terms:GO:0004375 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 **** B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0004375 NbS00018339g0004.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|225427224|ref|XP_002280507.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100242119 [Vitis vinifera];; (*TAIR) AT3G57990.1 (e_value=3e-24) | Symbols: | unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). | chr3:21470244-21471347 REVERSE LENGTH=367;; (*ITAG) Solyc10g080470.1.1 (e_value=6e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61057242-61058297 transcript_region:SL2.40ch10:61057242..61058297- functional_description:"Unknown Protein (AHRD V1)"; NbS00018339g0016.1 protein AED:0.36 eAED:0.36 QI:9|0|0.25|0.5|1|1|4|1339|163; (*GB) gi|224138856|ref|XP_002326707.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32370.4 (e_value=2e-17) | Symbols: TOM2B, TTM1 | tobamovirus multiplication 2B | chr1:11677005-11678032 FORWARD LENGTH=123;; (*ITAG) Solyc01g087690.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74375979-74378427 transcript_region:SL2.40ch01:74375979..74378427- go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 ***- Q59965_SYNP2); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0006355 NbS00018339g0014.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|3|0|229; (*GB) gi|357482353|ref|XP_003611462.1| (e_value=1e-24) Cytochrome P450 ent-kaurenoic acid oxidase [Medicago truncatula];; (*SWP) sp|Q9C5Y2|KAO2_ARATH (e_value=2e-20) Ent-kaurenoic acid oxidase 2 OS=Arabidopsis thaliana GN=KAO2 PE=2 SV=2;; (*TAIR) AT2G32440.2 (e_value=1e-21) | Symbols: KAO2 | ent-kaurenoic acid hydroxylase 2 | chr2:13775668-13777783 FORWARD LENGTH=489;; (*ITAG) Solyc08g007050.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1606156-1609642 transcript_region:SL2.40ch08:1606156..1609642- go_terms:GO:0051777,GO:0019825 functional_description:"Cytochrome P450"; GO:0051777,GO:0019825 NbC23972253g0001.1 protein AED:0.15 eAED:0.57 QI:39|0|0.5|1|0|0|2|0|46; (*ITAG) Solyc04g016410.2.1 (e_value=6e-21) genomic_reference:SL2.40ch04 gene_region:7200714-7218394 transcript_region:SL2.40ch04:7200714..7218394- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00019527g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|224060373|ref|XP_002300167.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT1G04850.1 (e_value=4e-19) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc12g098420.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00019527g0001.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|87; (*TAIR) AT1G04850.1 (e_value=6e-22) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc12g098420.1.1 (e_value=8e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00019527g0010.1 protein AED:0.73 eAED:0.73 QI:49|0.33|0.25|0.5|0|0.75|4|0|87 NbS00019527g0009.1 protein AED:0.01 eAED:0.01 QI:211|1|1|1|0|0|3|751|336; (*GB) gi|224055327|ref|XP_002298482.1| (e_value=1e-126) 20G-Fe(II) oxidoreductase [Populus trichocarpa];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=2e-54) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT5G58660.1 (e_value=1e-96) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:23701509-23703802 FORWARD LENGTH=352;; (*ITAG) Solyc06g082030.2.1 (e_value=2e-168) genomic_reference:SL2.40ch06 gene_region:44269516-44275025 transcript_region:SL2.40ch06:44269516..44275025+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00019527g0008.1 protein AED:0.08 eAED:0.08 QI:213|1|1|1|0|0.5|2|369|705; (*GB) gi|113129056|gb|ABI30334.1| (e_value=0.0) Cys-3-His zinc finger protein [Capsicum annuum];; (*SWP) sp|Q9LUZ4|C3H66_ARATH (e_value=1e-153) Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1;; (*TAIR) AT5G58620.1 (e_value=8e-155) | Symbols: | zinc finger (CCCH-type) family protein | chr5:23693959-23695782 FORWARD LENGTH=607;; (*ITAG) Solyc06g082010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44251649-44254674 transcript_region:SL2.40ch06:44251649..44254674+ go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0003700 NbS00032318g0006.1 protein AED:0.23 eAED:0.23 QI:611|1|0.90|1|0.9|0.81|11|283|732; (*GB) gi|350539948|ref|NP_001234845.1| (e_value=0.0) Prf interactor 30137 [Solanum lycopersicum];; (*SWP) sp|P0C7P8|LHWL1_ARATH (e_value=2e-53) Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1;; (*TAIR) AT1G06150.1 (e_value=1e-53) | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322;; (*ITAG) Solyc09g011170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4514885-4522076 transcript_region:SL2.40ch09:4514885..4522076- go_terms:GO:0016563,GO:0042803 functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *--- Y1615_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0016563,GO:0042803 NbS00007006g0002.1 protein AED:0.19 eAED:0.20 QI:1674|0.91|0.91|1|0.73|0.75|24|0|519; (*GB) gi|350537227|ref|NP_001233774.1| (e_value=0.0) ethylene insensitive 5/7 [Solanum lycopersicum];; (*SWP) sp|Q9FQ04|XRN4_ARATH (e_value=3e-104) 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1;; (*TAIR) AT1G54490.1 (e_value=2e-105) | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947;; (*ITAG) Solyc04g049010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38313587-38355062 transcript_region:SL2.40ch04:38313587..38355062- go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 *-** A2ATK1_MOUSE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbS00007006g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|0.6|0.5|6|0|595; (*GB) gi|2648032|emb|CAA04707.1| (e_value=0.0) alpha-glucosidase [Solanum tuberosum];; (*SWP) sp|Q94502|GANAB_DICDI (e_value=0.0) Neutral alpha-glucosidase AB OS=Dictyostelium discoideum GN=modA PE=3 SV=1;; (*TAIR) AT5G63840.1 (e_value=0.0) | Symbols: RSW3, PSL5 | Glycosyl hydrolases family 31 protein | chr5:25545056-25548922 FORWARD LENGTH=921;; (*ITAG) Solyc04g049070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38473202-38481643 transcript_region:SL2.40ch04:38473202..38481643- go_terms:GO:0004558 functional_description:"Alpha glucosidase II (AHRD V1 **** Q70AC6_SOLLC); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00007006g0003.1 protein AED:0.35 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|2648032|emb|CAA04707.1| (e_value=0.0) alpha-glucosidase [Solanum tuberosum];; (*SWP) sp|Q14697|GANAB_HUMAN (e_value=2e-73) Neutral alpha-glucosidase AB OS=Homo sapiens GN=GANAB PE=1 SV=3;; (*TAIR) AT5G63840.1 (e_value=0.0) | Symbols: RSW3, PSL5 | Glycosyl hydrolases family 31 protein | chr5:25545056-25548922 FORWARD LENGTH=921;; (*ITAG) Solyc04g049070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38473202-38481643 transcript_region:SL2.40ch04:38473202..38481643- go_terms:GO:0004558 functional_description:"Alpha glucosidase II (AHRD V1 **** Q70AC6_SOLLC); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00007006g0015.1 protein AED:0.59 eAED:1.00 QI:0|0|0|1|1|1|2|0|79 NbS00032737g0004.1 protein AED:0.33 eAED:0.33 QI:237|0.88|0.9|1|0.88|0.9|10|574|276; (*GB) gi|225453038|ref|XP_002266453.1| (e_value=2e-116) PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera];; (*TAIR) AT1G08640.1 (e_value=4e-99) | Symbols: CJD1 | Chloroplast J-like domain 1 | chr1:2748714-2751209 REVERSE LENGTH=294;; (*ITAG) Solyc04g009940.2.1 (e_value=3e-154) genomic_reference:SL2.40ch04 gene_region:3255363-3260014 transcript_region:SL2.40ch04:3255363..3260014+ functional_description:"Heat shock protein binding protein (AHRD V1 **-- D7KIU0_ARALY)"; NbS00039656g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|1|0.5|0.6|5|0|364; (*GB) gi|147768303|emb|CAN64754.1| (e_value=0.0) hypothetical protein VITISV_010542 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-43) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50000.1 (e_value=6e-180) | Symbols: | Protein kinase superfamily protein | chr5:20342838-20345033 REVERSE LENGTH=385;; (*ITAG) Solyc06g071410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40320383-40324461 transcript_region:SL2.40ch06:40320383..40324461- go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00021357g0013.1 protein AED:0.08 eAED:0.08 QI:371|0.90|0.66|1|0.81|0.66|12|0|1267; (*GB) gi|255560731|ref|XP_002521379.1| (e_value=0.0) Phospholipid-transporting ATPase, putative [Ricinus communis];; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2;; (*TAIR) AT1G17500.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023201 FORWARD LENGTH=1216;; (*ITAG) Solyc03g121810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63905200-63910005 transcript_region:SL2.40ch03:63905200..63910005+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 **** C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00021357g0011.1 protein AED:0.13 eAED:0.13 QI:207|1|0.5|1|1|1|2|0|118; (*GB) gi|357454599|ref|XP_003597580.1| (e_value=1e-29) EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula];; (*SWP) sp|C4B8C4|EPFL3_ARATH (e_value=3e-19) EPIDERMAL PATTERNING FACTOR-like protein 3 OS=Arabidopsis thaliana GN=EPFL3 PE=3 SV=1;; (*TAIR) AT3G13898.1 (e_value=2e-20) | Symbols: | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1). | chr3:4584011-4584334 FORWARD LENGTH=107;; (*ITAG) Solyc03g121790.2.1 (e_value=1e-54) genomic_reference:SL2.40ch03 gene_region:63898644-63899251 transcript_region:SL2.40ch03:63898644..63899251+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 3 (AHRD V1 ***- EPFL3_ARATH)"; NbS00021357g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.5|0.83|1|1|6|259|181; (*GB) gi|350534688|ref|NP_001233898.1| (e_value=5e-112) nonclathrin coat protein zeta1-COP [Solanum lycopersicum];; (*SWP) sp|Q940S5|COPZ1_ARATH (e_value=5e-89) Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1;; (*TAIR) AT1G60970.1 (e_value=4e-90) | Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177;; (*ITAG) Solyc03g121800.2.1 (e_value=9e-115) genomic_reference:SL2.40ch03 gene_region:63900340-63903757 transcript_region:SL2.40ch03:63900340..63903757+ go_terms:GO:0030117,GO:0006810 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- B6UH71_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0030117,GO:0006810 NbS00021357g0012.1 protein AED:0.20 eAED:0.20 QI:338|0.71|0.62|0.87|0.42|0.5|8|0|199; (*GB) gi|359482807|ref|XP_002277513.2| (e_value=3e-104) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=1e-102) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G26100.1 (e_value=8e-104) | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227885-13230508 REVERSE LENGTH=450;; (*ITAG) Solyc03g121820.2.1 (e_value=1e-107) genomic_reference:SL2.40ch03 gene_region:63912455-63918775 transcript_region:SL2.40ch03:63912455..63918775+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00007010g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.25|1|1|1|4|0|312; (*GB) gi|359480314|ref|XP_002270355.2| (e_value=5e-115) PREDICTED: uncharacterized protein yqjG-like [Vitis vinifera];; (*SWP) sp|P42620|YQJG_ECOLI (e_value=3e-39) Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=1 SV=1;; (*TAIR) AT5G44000.1 (e_value=6e-99) | Symbols: | Glutathione S-transferase family protein | chr5:17702231-17703934 REVERSE LENGTH=399;; (*ITAG) Solyc06g083770.2.1 (e_value=2e-141) genomic_reference:SL2.40ch06 gene_region:45391798-45394641 transcript_region:SL2.40ch06:45391798..45394641- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** B6U900_MAIZE); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00007010g0010.1 protein AED:0.13 eAED:0.13 QI:165|1|0.9|1|0.66|0.6|10|412|912; (*GB) gi|359480051|ref|XP_002270320.2| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera];; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=7e-134) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2;; (*TAIR) AT3G04380.2 (e_value=4e-135) | Symbols: SUVR4, SDG31 | SET-domain containing protein lysine methyltransferase family protein | chr3:1161602-1164539 FORWARD LENGTH=465;; (*ITAG) Solyc06g083760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45384714-45391381 transcript_region:SL2.40ch06:45384714..45391381+ go_terms:GO:0005634 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- Q0IEE2_AEDAE); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00007010g0117.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0|0.75|0.66|0.75|4|0|319 NbS00007010g0119.1 protein AED:0.09 eAED:0.09 QI:218|0.66|0.75|1|1|1|4|80|750 NbS00007010g0120.1 protein AED:0.10 eAED:0.11 QI:189|1|0.94|1|0.70|0.66|18|0|823 NbS00007010g0113.1 protein AED:0.11 eAED:0.11 QI:268|0.8|0.90|1|0.9|0.81|11|1048|507 NbS00004852g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|443; (*GB) gi|225432868|ref|XP_002283973.1| (e_value=4e-171) PREDICTED: CBL-interacting serine/threonine-protein kinase 7 [Vitis vinifera];; (*SWP) sp|Q9XIW0|CIPK7_ARATH (e_value=4e-154) CBL-interacting serine/threonine-protein kinase 7 OS=Arabidopsis thaliana GN=CIPK7 PE=1 SV=1;; (*TAIR) AT3G23000.1 (e_value=3e-155) | Symbols: CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | CBL-interacting protein kinase 7 | chr3:8172654-8173943 FORWARD LENGTH=429;; (*ITAG) Solyc09g083100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64180760-64182064 transcript_region:SL2.40ch09:64180760..64182064+ go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 20 (AHRD V1 **** C4P7W9_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00004852g0007.1 protein AED:0.04 eAED:0.22 QI:0|0|0|1|1|1|2|0|933; (*GB) gi|359477372|ref|XP_002280003.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Vitis vinifera];; (*SWP) sp|Q9LS88|PP250_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1;; (*TAIR) AT3G23020.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=842;; (*ITAG) Solyc09g083110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64190886-64193786 transcript_region:SL2.40ch09:64190886..64193786- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2I5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00004852g0009.1 protein AED:0.30 eAED:0.33 QI:0|0.57|0.62|1|0.85|0.86|29|1313|792; (*GB) gi|359477374|ref|XP_002284013.2| (e_value=1e-93) PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera];; (*SWP) sp|P13676|ACPH_RAT (e_value=3e-37) Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1;; (*TAIR) AT4G14570.1 (e_value=2e-85) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc09g083130.2.1 (e_value=3e-120) genomic_reference:SL2.40ch09 gene_region:64201580-64208191 transcript_region:SL2.40ch09:64201580..64208191- go_terms:GO:0004252 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 *-*- D1C565_SPHTD); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00018667g0004.1 protein AED:0.25 eAED:0.25 QI:629|1|1|1|0.53|0.64|14|1375|508; (*GB) gi|225438748|ref|XP_002282786.1| (e_value=0.0) PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9VQX4|PNCB_DROME (e_value=0.0) Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2;; (*TAIR) AT4G36940.1 (e_value=0.0) | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase 1 | chr4:17416938-17419883 FORWARD LENGTH=559;; (*ITAG) Solyc03g044430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:13182851-13192978 transcript_region:SL2.40ch03:13182851..13192978+ go_terms:GO:0004516 functional_description:"Nicotinate phosphoribosyltransferase-like protein (AHRD V1 **** Q6XQM5_MEDTR); contains Interpro domain(s) IPR006405 Nicotinate phosphoribosyltransferase putative "; GO:0004516 NbS00016409g0012.1 protein AED:0.27 eAED:0.29 QI:15|0.33|0|1|0.66|0.5|4|0|525; (*GB) gi|225462179|ref|XP_002266949.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255982 [Vitis vinifera];; (*TAIR) AT3G12940.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4130242-4131912 REVERSE LENGTH=474;; (*ITAG) Solyc07g066450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65104448-65108270 transcript_region:SL2.40ch07:65104448..65108270+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016409g0001.1 protein AED:0.26 eAED:0.29 QI:0|0.54|0.58|0.91|1|1|12|215|683; (*GB) gi|255558669|ref|XP_002520359.1| (e_value=0.0) porphobilinogen deaminase, putative [Ricinus communis];; (*SWP) sp|Q43082|HEM3_PEA (e_value=6e-180) Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1;; (*TAIR) AT5G08280.1 (e_value=1e-176) | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382;; (*ITAG) Solyc07g066470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65112777-65116118 transcript_region:SL2.40ch07:65112777..65116118- go_terms:GO:0004418 functional_description:"Porphobilinogen deaminase (AHRD V1 ***- B6TVP0_MAIZE); contains Interpro domain(s) IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase "; GO:0004418 NbS00016409g0108.1 protein AED:0.25 eAED:0.26 QI:0|0.78|0.66|1|0.64|0.66|15|0|608 NbS00016409g0109.1 protein AED:0.38 eAED:0.43 QI:0|0|0|1|0|0|2|0|33 NbS00027050g0005.1 protein AED:0.22 eAED:0.22 QI:51|0.8|0.68|1|0.86|0.81|16|1786|998; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.2 (e_value=3e-63) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58090161-58093457 transcript_region:SL2.40ch03:58090161..58093457+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** Q9FKL6_ARATH); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00027050g0016.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.5|0.83|0.8|0.83|6|101|416; (*GB) gi|224133440|ref|XP_002321568.1| (e_value=1e-58) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62570.1 (e_value=5e-48) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113940.2.1 (e_value=4e-136) genomic_reference:SL2.40ch03 gene_region:58039947-58042453 transcript_region:SL2.40ch03:58039947..58042453+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00027050g0019.1 protein AED:0.31 eAED:0.31 QI:165|0.85|0.87|1|0.85|0.87|8|243|248; (*GB) gi|225457126|ref|XP_002283569.1| (e_value=1e-91) PREDICTED: uncharacterized protein At5g50100, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W485|Y5010_ARATH (e_value=4e-80) Uncharacterized protein At5g50100, mitochondrial OS=Arabidopsis thaliana GN=At5g50100 PE=1 SV=1;; (*TAIR) AT5G50100.1 (e_value=3e-81) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr5:20371916-20373172 FORWARD LENGTH=214;; (*ITAG) Solyc03g113990.2.1 (e_value=2e-102) genomic_reference:SL2.40ch03 gene_region:58094446-58096957 transcript_region:SL2.40ch03:58094446..58096957- functional_description:"Uncharacterized conserved protein (AHRD V1 **-- Q0IAV1_SYNS3); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00044182g0008.1 protein AED:0.00 eAED:0.00 QI:293|1|1|1|1|1|2|540|290; (*GB) gi|225449096|ref|XP_002276217.1| (e_value=7e-152) PREDICTED: uncharacterized protein LOC100242744 [Vitis vinifera];; (*TAIR) AT3G12090.1 (e_value=2e-112) | Symbols: TET6 | tetraspanin6 | chr3:3852326-3853714 REVERSE LENGTH=282;; (*ITAG) Solyc04g049080.2.1 (e_value=1e-117) genomic_reference:SL2.40ch04 gene_region:38662724-38666499 transcript_region:SL2.40ch04:38662724..38666499+ go_terms:GO:0016021 functional_description:"Senescence-associated protein-like (AHRD V1 ***- Q9LH57_ARATH); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00016971g0011.1 protein AED:0.09 eAED:0.09 QI:234|1|1|1|1|1|6|252|574; (*GB) gi|2497541|sp|Q40545.1|KPYA_TOBAC (e_value=0.0) RecName: Full=Pyruvate kinase isozyme A, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40545|KPYA_TOBAC (e_value=0.0) Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G22960.1 (e_value=0.0) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc09g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64040779-64049501 transcript_region:SL2.40ch09:64040779..64049501+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9HKC4_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00016971g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|1|1|1|3|0|157; (*GB) gi|225432850|ref|XP_002283837.1| (e_value=3e-103) PREDICTED: ADP-ribosylation factor-like protein 5 [Vitis vinifera];; (*SWP) sp|Q55AD9|ARL5_DICDI (e_value=8e-70) ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1;; (*TAIR) AT3G22950.2 (e_value=6e-100) | Symbols: ARFC1 | ADP-ribosylation factor C1 | chr3:8136364-8137513 REVERSE LENGTH=183;; (*ITAG) Solyc03g005300.2.1 (e_value=6e-110) genomic_reference:SL2.40ch03 gene_region:167876-173442 transcript_region:SL2.40ch03:167876..173442- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor C1 (AHRD V1 ***- D7MXG7_ARALY); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00016971g0009.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|146; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-18) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc03g093100.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00060964g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|255546491|ref|XP_002514305.1| (e_value=3e-33) conserved hypothetical protein [Ricinus communis]; NbS00013098g0008.1 protein AED:0.26 eAED:0.26 QI:204|0.71|0.75|1|0.57|0.5|8|227|339; (*GB) gi|350537643|ref|NP_001234814.1| (e_value=8e-129) MLO1 protein [Solanum lycopersicum];; (*SWP) sp|Q9SXB6|MLO2_ARATH (e_value=7e-92) MLO-like protein 2 OS=Arabidopsis thaliana GN=MLO2 PE=1 SV=1;; (*TAIR) AT1G11310.2 (e_value=8e-95) | Symbols: MLO2, ATMLO2, PMR2 | Seven transmembrane MLO family protein | chr1:3801546-3803870 REVERSE LENGTH=418;; (*ITAG) Solyc04g049090.2.1 (e_value=2e-131) genomic_reference:SL2.40ch04 gene_region:38700445-38705951 transcript_region:SL2.40ch04:38700445..38705951- go_terms:GO:0016021 functional_description:"MLO-like protein 17 (AHRD V1 ***- C6EWF0_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00013098g0009.1 protein AED:0.32 eAED:0.32 QI:483|0.75|0.77|1|0.5|0.55|9|309|123; (*GB) gi|225449084|ref|XP_002275709.1| (e_value=2e-18) PREDICTED: transmembrane protein 115 [Vitis vinifera];; (*TAIR) AT3G07950.1 (e_value=3e-15) | Symbols: | rhomboid protein-related | chr3:2531982-2534277 FORWARD LENGTH=304;; (*ITAG) Solyc04g049180.2.1 (e_value=6e-40) genomic_reference:SL2.40ch04 gene_region:39177175-39180019 transcript_region:SL2.40ch04:39177175..39180019+ functional_description:"Transmembrane protein 115 (AHRD V1 ***- B6TIG9_MAIZE); contains Interpro domain(s) IPR013861 Protein of unknown function DUF1751, integral membrane, eukaryotic "; NbS00061338g0004.1 protein AED:0.00 eAED:0.00 QI:127|1|1|1|0|0.5|2|140|30 NbS00061338g0005.1 protein AED:0.23 eAED:0.30 QI:0|0.5|0.33|1|0.5|0.44|9|0|292; (*GB) gi|255539889|ref|XP_002511009.1| (e_value=3e-113) catalytic, putative [Ricinus communis];; (*TAIR) AT5G51180.2 (e_value=1e-103) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20797360-20799929 FORWARD LENGTH=357;; (*ITAG) Solyc03g093510.2.1 (e_value=8e-140) genomic_reference:SL2.40ch03 gene_region:48303256-48310645 transcript_region:SL2.40ch03:48303256..48310645+ functional_description:"Serine esterase family protein (AHRD V1 **-- B6U861_MAIZE); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00019816g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.5|0.75|0.33|0.25|4|0|81; (*GB) gi|224113189|ref|XP_002316419.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04540.1 (e_value=2e-36) | Symbols: | Myotubularin-like phosphatases II superfamily | chr5:1296826-1302299 REVERSE LENGTH=833;; (*ITAG) Solyc11g007670.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00019816g0006.1 protein AED:0.45 eAED:0.50 QI:78|0.5|0|0.66|0.5|1|3|0|39; (*ITAG) Solyc11g007670.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00009338g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.6|1|0.88|0.8|10|305|516; (*GB) gi|225434396|ref|XP_002270785.1| (e_value=0.0) PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SR86|AGT23_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1;; (*TAIR) AT3G08860.1 (e_value=0.0) | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696754-2699087 REVERSE LENGTH=481;; (*ITAG) Solyc10g076250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58474750-58478564 transcript_region:SL2.40ch10:58474750..58478564+ go_terms:GO:0030170 functional_description:"Aminotransferase like protein (AHRD V1 ***- Q0WWF1_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00036418g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|1|1|4|220|322; (*GB) gi|350537455|ref|NP_001234294.1| (e_value=4e-153) transcription factor [Solanum lycopersicum];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=5e-97) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT5G62470.2 (e_value=5e-100) | Symbols: MYB96 | myb domain protein 96 | chr5:25079434-25080858 REVERSE LENGTH=352;; (*ITAG) Solyc02g067340.2.1 (e_value=5e-156) genomic_reference:SL2.40ch02 gene_region:32118568-32121578 transcript_region:SL2.40ch02:32118568..32121578- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SN78_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00007897g0006.1 protein AED:0.13 eAED:0.13 QI:259|1|1|1|1|1|5|1352|252; (*GB) gi|51490665|emb|CAG26903.1| (e_value=4e-104) ALY protein [Nicotiana benthamiana];; (*SWP) sp|B5FXN8|THOC4_TAEGU (e_value=1e-36) THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1;; (*TAIR) AT5G59950.4 (e_value=5e-63) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140235-24141410 FORWARD LENGTH=211;; (*ITAG) Solyc11g073280.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53371249-53374473 transcript_region:SL2.40ch11:53371249..53374473+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- C1N7F4_MICPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00007897g0009.1 protein AED:0.39 eAED:0.39 QI:2|0.87|0.88|1|0.87|0.88|9|0|281; (*GB) gi|225435022|ref|XP_002284193.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100260346 [Vitis vinifera];; (*TAIR) AT5G59960.1 (e_value=1e-151) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24142352-24145140 REVERSE LENGTH=359;; (*ITAG) Solyc11g073300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53376607-53382033 transcript_region:SL2.40ch11:53376607..53382033- functional_description:"Genomic DNA chromosome 5 P1 clone MMN10 (AHRD V1 ***- Q9FJE0_ARATH)"; NbS00057107g0004.1 protein AED:0.03 eAED:0.07 QI:369|0.66|0.42|0.85|0.5|0.42|7|0|459; (*GB) gi|357508775|ref|XP_003624676.1| (e_value=2e-16) hypothetical protein MTR_7g086290 [Medicago truncatula];; (*TAIR) AT5G17930.1 (e_value=9e-14) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:5940131-5943952 REVERSE LENGTH=784;; (*ITAG) Solyc03g097280.2.1 (e_value=9e-117) genomic_reference:SL2.40ch03 gene_region:53040555-53058473 transcript_region:SL2.40ch03:53040555..53058473+ go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor CWC22 homolog (AHRD V1 *--- CWC22_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515 NbS00009383g0013.1 protein AED:0.00 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|297; (*GB) gi|225451038|ref|XP_002284939.1| (e_value=5e-139) PREDICTED: UPF0603 protein At1g54780, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZVL6|U603_ARATH (e_value=1e-130) UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1;; (*TAIR) AT1G54780.1 (e_value=7e-132) | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protein | chr1:20439533-20440953 FORWARD LENGTH=285;; (*ITAG) Solyc01g098640.2.1 (e_value=7e-180) genomic_reference:SL2.40ch01 gene_region:80853972-80856857 transcript_region:SL2.40ch01:80853972..80856857+ functional_description:"UPF0603 protein At1g54780, chloroplastic (AHRD V1 **-- U603_ARATH); contains Interpro domain(s) IPR007621 Protein of unknown function DUF477 "; NbS00009383g0011.1 protein AED:0.08 eAED:0.08 QI:92|1|1|1|0.8|0.66|6|1991|380; (*GB) gi|224123238|ref|XP_002319029.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ECP6|GDL22_ARATH (e_value=0.0) GDSL esterase/lipase At1g54790 OS=Arabidopsis thaliana GN=At1g54790 PE=2 SV=1;; (*TAIR) AT1G54790.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:20441124-20443997 REVERSE LENGTH=382;; (*ITAG) Solyc01g098650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80856739-80860452 transcript_region:SL2.40ch01:80856739..80860452- go_terms:GO:0004560,GO:0004091 functional_description:"GDSL esterase/lipase At1g54790 (AHRD V1 ***- GDL22_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004560,GO:0004091 NbS00009383g0009.1 protein AED:0.10 eAED:0.10 QI:173|1|1|1|0.71|0.73|15|333|458; (*GB) gi|359487774|ref|XP_002281127.2| (e_value=0.0) PREDICTED: kinesin-related protein 3-like [Vitis vinifera];; (*SWP) sp|F9W301|PSS1_ORYSJ (e_value=0.0) Kinesin-1-like protein PSS1 OS=Oryza sativa subsp. japonica GN=PSS1 PE=1 SV=1;; (*TAIR) AT3G63480.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr3:23441065-23443809 REVERSE LENGTH=465;; (*ITAG) Solyc01g098670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80860890-80864183 transcript_region:SL2.40ch01:80860890..80864183- go_terms:GO:0008017,GO:0042803 functional_description:"Kinesin 1-like (AHRD V1 ***- Q69UI4_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017,GO:0042803 NbS00042736g0002.1 protein AED:0.20 eAED:0.21 QI:604|0.90|0.90|1|0.61|0.59|22|1586|449; (*GB) gi|359490859|ref|XP_002268525.2| (e_value=4e-108) PREDICTED: histone-lysine N-methyltransferase ATX4-like [Vitis vinifera];; (*SWP) sp|Q9SUE7|ATX4_ARATH (e_value=3e-91) Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3;; (*TAIR) AT4G27910.1 (e_value=2e-92) | Symbols: ATX4, SDG16 | SET domain protein 16 | chr4:13894694-13900256 FORWARD LENGTH=1027;; (*ITAG) Solyc03g083410.2.1 (e_value=1e-137) genomic_reference:SL2.40ch03 gene_region:46825224-46835629 transcript_region:SL2.40ch03:46825224..46835629+ go_terms:GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B3LSN4_YEAS1); contains Interpro domain(s) IPR001214 SET "; GO:0003677 NbS00023522g0006.1 protein AED:0.27 eAED:0.29 QI:0|0.70|0.61|1|0.76|0.66|18|1315|802; (*GB) gi|359482963|ref|XP_003632867.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=2e-110) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT3G14205.1 (e_value=0.0) | Symbols: | Phosphoinositide phosphatase family protein | chr3:4716008-4720524 REVERSE LENGTH=808;; (*ITAG) Solyc03g123520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64397000-64404700 transcript_region:SL2.40ch03:64397000..64404700+ go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- C1H752_PARBA); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00059612g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.4|0.8|1|1|5|0|553; (*GB) gi|255573163|ref|XP_002527511.1| (e_value=0.0) Beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|Q9LJN4|BXL5_ARATH (e_value=0.0) Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2;; (*TAIR) AT3G19620.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:6815613-6818308 REVERSE LENGTH=781;; (*ITAG) Solyc10g047030.1.1 (e_value=2e-151) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34703285-34707424 transcript_region:SL2.40ch10:34703285..34707424+ go_terms:GO:0009044,GO:0005515 functional_description:"Beta-xylosidase 4 (AHRD V1 **** D7MRV5_ARALY); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0005515 NbS00061698g0001.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|147776740|emb|CAN72416.1| (e_value=0.0) hypothetical protein VITISV_027905 [Vitis vinifera];; (*SWP) sp|Q8LDU5|PP298_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2;; (*TAIR) AT4G01400.3 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). | chr4:575843-577243 REVERSE LENGTH=466;; (*ITAG) Solyc11g068470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50268999-50270432 transcript_region:SL2.40ch11:50268999..50270432- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4W3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017174g0017.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.61|1|0.58|0.61|13|0|485; (*GB) gi|225438714|ref|XP_002282485.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267903 [Vitis vinifera];; (*SWP) sp|A0JNI5|CLASR_BOVIN (e_value=2e-16) CLK4-associating serine/arginine rich protein OS=Bos taurus GN=CLASRP PE=2 SV=1;; (*TAIR) AT4G36980.3 (e_value=3e-166) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). | chr4:17433861-17437012 REVERSE LENGTH=554;; (*ITAG) Solyc02g090850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46898348-46906437 transcript_region:SL2.40ch02:46898348..46906437+ functional_description:"Splicing factor arginine/serine-rich 16 (AHRD V1 *-*- C0HB74_SALSA); contains Interpro domain(s) IPR019147 Splicing factor, suppressor of white apricot "; NbS00017174g0016.1 protein AED:0.44 eAED:0.45 QI:0|1|0.5|1|1|1|2|370|94 NbS00017174g0012.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|0|0.5|2|0|99; (*GB) gi|4006875|emb|CAB16793.1| (e_value=1e-25) putative protein [Arabidopsis thaliana];; (*TAIR) AT4G36980.2 (e_value=5e-27) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). | chr4:17434283-17437012 REVERSE LENGTH=507;; (*ITAG) Solyc02g090850.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:46898348-46906437 transcript_region:SL2.40ch02:46898348..46906437+ functional_description:"Splicing factor arginine/serine-rich 16 (AHRD V1 *-*- C0HB74_SALSA); contains Interpro domain(s) IPR019147 Splicing factor, suppressor of white apricot "; NbS00000668g0001.1 protein AED:0.05 eAED:0.05 QI:256|0|0.5|1|0|1|2|297|89; (*GB) gi|311893231|dbj|BAJ25787.1| (e_value=5e-35) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=7e-20) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*ITAG) Solyc04g007760.2.1 (e_value=6e-32) genomic_reference:SL2.40ch04 gene_region:1435905-1437368 transcript_region:SL2.40ch04:1435905..1437368+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00019517g0010.1 protein AED:0.29 eAED:0.30 QI:0|0.33|0|0.71|0.66|0.57|7|0|347; (*GB) gi|388494926|gb|AFK35529.1| (e_value=5e-45) unknown [Lotus japonicus];; (*SWP) sp|P43283|TRPB1_MAIZE (e_value=2e-46) Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1;; (*TAIR) AT4G27070.1 (e_value=2e-45) | Symbols: TSB2 | tryptophan synthase beta-subunit 2 | chr4:13586564-13588619 FORWARD LENGTH=475;; (*ITAG) Solyc07g064280.2.1 (e_value=5e-49) genomic_reference:SL2.40ch07 gene_region:63715597-63719310 transcript_region:SL2.40ch07:63715597..63719310- go_terms:GO:0016833,GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0016833,GO:0004834 NbS00019517g0008.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.6|1|1|0.8|5|588|405; (*GB) gi|224124274|ref|XP_002319290.1| (e_value=1e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M5A9|GPT1_ARATH (e_value=3e-156) Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1;; (*TAIR) AT5G54800.1 (e_value=2e-157) | Symbols: GPT1, ATGPT1 | glucose 6-phosphate/phosphate translocator 1 | chr5:22261408-22263562 FORWARD LENGTH=388;; (*ITAG) Solyc07g064270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63711258-63715720 transcript_region:SL2.40ch07:63711258..63715720+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6-phosphate/phosphate-translocator (AHRD V1 **** O64910_PEA); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00019517g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0.5|0.75|0.66|0.5|4|345|458; (*GB) gi|224113877|ref|XP_002316601.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX51|FBL64_ARATH (e_value=1e-36) F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1;; (*TAIR) AT3G59200.1 (e_value=1e-37) | Symbols: | F-box/RNI-like superfamily protein | chr3:21887484-21889214 FORWARD LENGTH=520;; (*ITAG) Solyc07g064260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63701666-63705606 transcript_region:SL2.40ch07:63701666..63705606+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 *-*- D7LTH7_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515 NbS00015154g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|225456930|ref|XP_002281358.1| (e_value=1e-73) PREDICTED: protein LATERAL ORGAN BOUNDARIES-like [Vitis vinifera];; (*SWP) sp|Q9FML4|LOB_ARATH (e_value=1e-70) Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1;; (*TAIR) AT5G63090.4 (e_value=1e-71) | Symbols: LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH=186;; (*ITAG) Solyc06g071660.1.1 (e_value=8e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40520649-40523044 transcript_region:SL2.40ch06:40520649..40523044+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00012906g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|0.5|1|1|2|193|85 NbS00029515g0001.1 protein AED:0.35 eAED:0.35 QI:377|0.5|0.63|1|1|1|11|232|359; (*GB) gi|225438748|ref|XP_002282786.1| (e_value=3e-167) PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9VQX4|PNCB_DROME (e_value=1e-100) Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2;; (*TAIR) AT4G36940.1 (e_value=1e-156) | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase 1 | chr4:17416938-17419883 FORWARD LENGTH=559;; (*ITAG) Solyc03g044430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:13182851-13192978 transcript_region:SL2.40ch03:13182851..13192978+ go_terms:GO:0004516 functional_description:"Nicotinate phosphoribosyltransferase-like protein (AHRD V1 **** Q6XQM5_MEDTR); contains Interpro domain(s) IPR006405 Nicotinate phosphoribosyltransferase putative "; GO:0004516 NbS00009092g0003.1 protein AED:0.44 eAED:0.44 QI:0|0|0.16|0.5|0|0.33|6|0|209; (*GB) gi|356560121|ref|XP_003548344.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100797710 [Glycine max];; (*TAIR) AT4G18530.1 (e_value=8e-16) | Symbols: | Protein of unknown function (DUF707) | chr4:10217749-10220285 FORWARD LENGTH=389;; (*ITAG) Solyc01g103170.2.1 (e_value=5e-27) genomic_reference:SL2.40ch01 gene_region:83589714-83597304 transcript_region:SL2.40ch01:83589714..83597304- go_terms:GO:0006508 functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; GO:0006508 NbS00004267g0014.1 protein AED:0.23 eAED:0.23 QI:238|1|0.83|1|1|1|6|0|570; (*GB) gi|359483794|ref|XP_002264038.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244557 [Vitis vinifera];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=0.0) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=0.0) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc02g071780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35706526-35712769 transcript_region:SL2.40ch02:35706526..35712769- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00004267g0013.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|0.75|0.8|5|0|246; (*GB) gi|225443672|ref|XP_002263413.1| (e_value=1e-73) PREDICTED: uncharacterized protein LOC100246418 [Vitis vinifera];; (*TAIR) AT5G45690.1 (e_value=6e-63) | Symbols: | Protein of unknown function (DUF1264) | chr5:18535139-18536259 REVERSE LENGTH=247;; (*ITAG) Solyc02g071760.2.1 (e_value=6e-85) genomic_reference:SL2.40ch02 gene_region:35702421-35703670 transcript_region:SL2.40ch02:35702421..35703670- functional_description:"DUF1264 domain protein (AHRD V1 **-- A1CBM4_ASPCL); contains Interpro domain(s) IPR010686 Protein of unknown function DUF1264 "; NbS00004267g0020.1 protein AED:0.27 eAED:0.31 QI:0|0.58|0.69|1|0.16|0.23|13|1086|267; (*GB) gi|297740562|emb|CBI30744.3| (e_value=9e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=2e-23) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29730.1 (e_value=1e-24) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:10400710-10405874 REVERSE LENGTH=969;; (*ITAG) Solyc02g071810.2.1 (e_value=9e-98) genomic_reference:SL2.40ch02 gene_region:35737283-35746207 transcript_region:SL2.40ch02:35737283..35746207- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00046760g0008.1 protein AED:0.12 eAED:0.12 QI:50|1|1|1|1|1|4|340|297; (*GB) gi|350539649|ref|NP_001234233.1| (e_value=2e-122) HD-ZIP protein [Solanum lycopersicum];; (*SWP) sp|P46602|HAT3_ARATH (e_value=8e-72) Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2;; (*TAIR) AT3G60390.1 (e_value=6e-73) | Symbols: HAT3 | homeobox-leucine zipper protein 3 | chr3:22320788-22322370 REVERSE LENGTH=315;; (*ITAG) Solyc01g090460.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:75898047-75900023 transcript_region:SL2.40ch01:75898047..75900023- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q39862_SOYBN); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0043565 NbS00046760g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.77|0.7|1|1|1|10|435|388; (*GB) gi|147855522|emb|CAN83854.1| (e_value=3e-110) hypothetical protein VITISV_031103 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=3e-13) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=3e-24) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc01g090480.2.1 (e_value=4e-134) genomic_reference:SL2.40ch01 gene_region:75921932-75927208 transcript_region:SL2.40ch01:75921932..75927208- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00022324g0009.1 protein AED:0.22 eAED:0.22 QI:156|0.71|0.6|1|0.78|0.86|15|236|395; (*GB) gi|350537825|ref|NP_001234056.1| (e_value=0.0) malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|O48902|MDHP_MEDSA (e_value=0.0) Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1;; (*TAIR) AT5G58330.1 (e_value=0.0) | Symbols: | lactate/malate dehydrogenase family protein | chr5:23580010-23582287 REVERSE LENGTH=443;; (*ITAG) Solyc11g007990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2198505-2203902 transcript_region:SL2.40ch11:2198505..2203902+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q5NE17_SOLLC); contains Interpro domain(s) IPR011273 Malate dehydrogenase, NADP-dependent, plants "; GO:0030060 NbS00022324g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.5|1|1|1|6|0|493; (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=2e-175) nam-like protein 9 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=9e-113) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=7e-114) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc11g008000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2205263-2208572 transcript_region:SL2.40ch11:2205263..2208572- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00009766g0001.1 protein AED:0.07 eAED:0.07 QI:450|1|0.5|1|1|1|2|0|260; (*GB) gi|15230010|ref|NP_187209.1| (e_value=3e-162) serine/threonine-protein phosphatase PP1 isozyme 9 [Arabidopsis thaliana];; (*SWP) sp|Q9M9W3|PP19_ARATH (e_value=9e-164) Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1;; (*TAIR) AT3G05580.1 (e_value=7e-165) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:1618216-1619850 REVERSE LENGTH=318;; (*ITAG) Solyc01g099860.2.1 (e_value=7e-177) genomic_reference:SL2.40ch01 gene_region:81754501-81757239 transcript_region:SL2.40ch01:81754501..81757239- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q84T16_PHAAT); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00026405g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|81; (*ITAG) Solyc06g084170.2.1 (e_value=7e-34) genomic_reference:SL2.40ch06 gene_region:45670468-45671823 transcript_region:SL2.40ch06:45670468..45671823+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042036g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0.5|0.33|3|302|599; (*GB) gi|302127798|emb|CBP07430.1| (e_value=0.0) sterol reductase [Solanum tuberosum];; (*SWP) sp|P93472|DIM_PEA (e_value=0.0) Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1;; (*TAIR) AT3G19820.3 (e_value=0.0) | Symbols: DWF1 | cell elongation protein / DWARF1 / DIMINUTO (DIM) | chr3:6879835-6881616 REVERSE LENGTH=561;; (*ITAG) Solyc02g030170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15953224-15955598 transcript_region:SL2.40ch02:15953224..15955598- go_terms:GO:0042605,GO:0019899 functional_description:"FAD linked oxidase domain protein (AHRD V1 **-- D1VPW7_9ACTO); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0042605,GO:0019899 NbS00056911g0004.1 protein AED:0.23 eAED:0.25 QI:193|0.72|0.84|1|0.38|0.57|19|0|695; (*GB) gi|296081493|emb|CBI20016.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G56145.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:21008225-21013934 REVERSE LENGTH=1012;; (*ITAG) Solyc07g066550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00001360g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|138; (*GB) gi|225454162|ref|XP_002271495.1| (e_value=1e-73) PREDICTED: actin-depolymerizing factor 10 [Vitis vinifera];; (*SWP) sp|Q8LFH6|ADF12_ARATH (e_value=2e-71) Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2;; (*TAIR) AT5G52360.1 (e_value=1e-72) | Symbols: ADF10 | actin depolymerizing factor 10 | chr5:21258157-21259229 REVERSE LENGTH=137;; (*ITAG) Solyc01g094400.2.1 (e_value=5e-86) genomic_reference:SL2.40ch01 gene_region:77662552-77664208 transcript_region:SL2.40ch01:77662552..77664208- go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00001360g0002.1 protein AED:0.11 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|357507217|ref|XP_003623897.1| (e_value=2e-16) Ripening-related protein [Medicago truncatula];; (*ITAG) Solyc05g048780.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58585464-58586024 transcript_region:SL2.40ch05:58585464..58586024+ functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00059302g0004.1 protein AED:0.34 eAED:0.37 QI:191|0.72|0.83|1|0.54|0.58|12|411|295; (*GB) gi|356575088|ref|XP_003555674.1| (e_value=3e-140) PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max];; (*SWP) sp|Q803I2|ERGI3_DANRE (e_value=5e-37) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1;; (*TAIR) AT3G22290.1 (e_value=5e-140) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc07g044810.2.1 (e_value=7e-141) genomic_reference:SL2.40ch07 gene_region:55163956-55178160 transcript_region:SL2.40ch07:55163956..55178160- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00034941g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.88|0.6|0.9|0.88|1|10|0|516; (*GB) gi|225427230|ref|XP_002280602.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At4g35230 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=0.0) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00047057g0006.1 protein AED:0.10 eAED:0.10 QI:31|1|0.90|1|0.9|0.90|11|346|519; (*GB) gi|225429452|ref|XP_002277146.1| (e_value=0.0) PREDICTED: serine hydroxymethyltransferase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SZJ5|GLYM_ARATH (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1;; (*TAIR) AT4G32520.2 (e_value=0.0) | Symbols: SHM3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529;; (*ITAG) Solyc08g065490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50811507-50815744 transcript_region:SL2.40ch08:50811507..50815744- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** B9S1D7_RICCO); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00047057g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.6|1|0.75|0.6|5|684|116; (*GB) gi|357447127|ref|XP_003593839.1| (e_value=8e-47) Thioredoxin family protein [Medicago truncatula];; (*TAIR) AT2G25950.1 (e_value=7e-44) | Symbols: | Protein of unknown function (DUF1000) | chr2:11068735-11070524 FORWARD LENGTH=204;; (*ITAG) Solyc08g065640.2.1 (e_value=2e-50) genomic_reference:SL2.40ch08 gene_region:51051346-51059767 transcript_region:SL2.40ch08:51051346..51059767- functional_description:"Thioredoxin-like protein (AHRD V1 **-- Q2UPJ7_ASPOR); contains Interpro domain(s) IPR010400 Protein of unknown function DUF1000 "; NbS00028724g0009.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|350536551|ref|NP_001234508.1| (e_value=1e-60) nucleic acid-binding protein [Solanum lycopersicum];; (*SWP) sp|Q75IR6|ALFL1_ORYSJ (e_value=7e-45) PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. japonica GN=Os05g0163100 PE=2 SV=1;; (*TAIR) AT5G05610.2 (e_value=5e-46) | Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241;; (*ITAG) Solyc06g051420.2.1 (e_value=2e-63) genomic_reference:SL2.40ch06 gene_region:31277366-31290088 transcript_region:SL2.40ch06:31277366..31290088- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7LYZ0_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00028724g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0|0.4|0.25|0.2|5|0|199; (*GB) gi|350536551|ref|NP_001234508.1| (e_value=2e-69) nucleic acid-binding protein [Solanum lycopersicum];; (*SWP) sp|Q9FFF5|ALFL1_ARATH (e_value=9e-46) PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1;; (*TAIR) AT5G05610.2 (e_value=7e-47) | Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241;; (*ITAG) Solyc06g051420.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:31277366-31290088 transcript_region:SL2.40ch06:31277366..31290088- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7LYZ0_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00040216g0015.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.6|0.8|1|1|5|510|282; (*GB) gi|150036255|gb|ABR67418.1| (e_value=1e-116) mitochondrial FAD carrier [Cucumis melo subsp. melo];; (*SWP) sp|Q75A82|ANT1_ASHGO (e_value=7e-15) Peroxisomal adenine nucleotide transporter 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ANT1 PE=3 SV=1;; (*TAIR) AT3G05290.1 (e_value=2e-115) | Symbols: PNC1 | peroxisomal adenine nucleotide carrier 1 | chr3:1506129-1507614 REVERSE LENGTH=322;; (*ITAG) Solyc01g098910.2.1 (e_value=1e-126) genomic_reference:SL2.40ch01 gene_region:81036549-81040755 transcript_region:SL2.40ch01:81036549..81040755- go_terms:GO:0015217,GO:0005347 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P0Z3_COCP7); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015217,GO:0005347 NbS00040216g0012.1 protein AED:0.35 eAED:0.35 QI:208|1|0.83|1|0.6|0.83|6|0|280; (*GB) gi|255542616|ref|XP_002512371.1| (e_value=5e-153) Protein YIPF1, putative [Ricinus communis];; (*SWP) sp|Q54TS4|YIPF1_DICDI (e_value=1e-34) Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1;; (*TAIR) AT5G27490.1 (e_value=7e-149) | Symbols: | Integral membrane Yip1 family protein | chr5:9703130-9704653 REVERSE LENGTH=282;; (*ITAG) Solyc01g098900.2.1 (e_value=6e-180) genomic_reference:SL2.40ch01 gene_region:81028899-81034087 transcript_region:SL2.40ch01:81028899..81034087- go_terms:GO:0017137 functional_description:"Yip1 domain-containing protein (AHRD V1 **-- D3BM06_POLPA); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00040216g0004.1 protein AED:0.46 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|90 NbS00040216g0019.1 protein AED:0.12 eAED:0.14 QI:0|0.88|0.7|1|0.77|0.8|10|571|1211; (*GB) gi|359487791|ref|XP_002280871.2| (e_value=3e-121) PREDICTED: uncharacterized protein LOC100259597 [Vitis vinifera];; (*TAIR) AT1G54920.2 (e_value=9e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20470916-20474898 FORWARD LENGTH=890;; (*ITAG) Solyc01g098870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81009393-81018896 transcript_region:SL2.40ch01:81009393..81018896+ functional_description:"Nucleolar GTPase (AHRD V1 *-*- A6YTC8_CUCME)"; NbS00040216g0013.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.77|1|0.87|0.88|9|0|459; (*GB) gi|225450981|ref|XP_002284787.1| (e_value=0.0) PREDICTED: seryl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|O81983|SYS_HELAN (e_value=0.0) Serine--tRNA ligase OS=Helianthus annuus PE=2 SV=1;; (*TAIR) AT5G27470.1 (e_value=0.0) | Symbols: | seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=451;; (*ITAG) Solyc01g098880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81019466-81025335 transcript_region:SL2.40ch01:81019466..81025335+ go_terms:GO:0005737,GO:0000166 functional_description:"Seryl-tRNA synthetase (AHRD V1 ***- D7M641_ARALY); contains Interpro domain(s) IPR002317 Seryl-tRNA synthetase, class IIa "; GO:0005737,GO:0000166 NbS00040216g0016.1 protein AED:0.22 eAED:0.34 QI:56|0|0|1|0|0|2|0|125; (*ITAG) Solyc02g093660.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00000244g0010.1 protein AED:0.08 eAED:0.08 QI:81|0|0.33|1|0|0.33|3|525|87; (*GB) gi|356570658|ref|XP_003553502.1| (e_value=3e-27) PREDICTED: phospholipid--sterol O-acyltransferase-like [Glycine max];; (*SWP) sp|Q4VCM1|LCAT2_ARATH (e_value=7e-24) Phospholipid--sterol O-acyltransferase OS=Arabidopsis thaliana GN=PSAT PE=2 SV=2;; (*TAIR) AT1G04010.1 (e_value=5e-25) | Symbols: PSAT1, ATPSAT1 | phospholipid sterol acyl transferase 1 | chr1:1031703-1036128 REVERSE LENGTH=633; NbS00000244g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.9|0.72|1|0.8|0.81|11|0|470; (*GB) gi|125541595|gb|EAY87990.1| (e_value=0.0) hypothetical protein OsI_09412 [Oryza sativa Indica Group];; (*SWP) sp|Q4VCM1|LCAT2_ARATH (e_value=0.0) Phospholipid--sterol O-acyltransferase OS=Arabidopsis thaliana GN=PSAT PE=2 SV=2;; (*TAIR) AT1G04010.1 (e_value=0.0) | Symbols: PSAT1, ATPSAT1 | phospholipid sterol acyl transferase 1 | chr1:1031703-1036128 REVERSE LENGTH=633;; (*ITAG) Solyc09g072710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60818267-60830346 transcript_region:SL2.40ch09:60818267..60830346- go_terms:GO:0080095,GO:0004607,GO:0080096 functional_description:"Phosphatidylcholine-sterol O-acyltransferase (AHRD V1 **** D7KDA5_ARALY); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0080095,GO:0004607,GO:0080096 NbS00021401g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|225458571|ref|XP_002284587.1| (e_value=5e-149) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9SX78|CXE2_ARATH (e_value=3e-97) Probable carboxylesterase 2 OS=Arabidopsis thaliana GN=CXE2 PE=2 SV=1;; (*TAIR) AT1G47480.1 (e_value=3e-98) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314;; (*ITAG) Solyc04g079190.2.1 (e_value=3e-107) genomic_reference:SL2.40ch04 gene_region:61337920-61339311 transcript_region:SL2.40ch04:61337920..61339311+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00021401g0002.1 protein AED:0.34 eAED:0.34 QI:63|1|1|1|0.5|0.4|5|425|239; (*GB) gi|224136704|ref|XP_002326924.1| (e_value=7e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX77|UMP6_ARATH (e_value=3e-89) Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1;; (*TAIR) AT1G47420.1 (e_value=3e-90) | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395774-17397176 REVERSE LENGTH=257;; (*ITAG) Solyc12g088900.1.1 (e_value=1e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62533999-62537043 transcript_region:SL2.40ch12:62533999..62537043- functional_description:"Unknown Protein (AHRD V1)"; NbS00021401g0003.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|1|1|3|120|283; (*GB) gi|225432792|ref|XP_002283454.1| (e_value=1e-35) PREDICTED: DPH4 homolog isoform 3 [Vitis vinifera];; (*TAIR) AT4G10130.1 (e_value=5e-29) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr4:6320959-6321483 REVERSE LENGTH=174;; (*ITAG) Solyc12g088890.1.1 (e_value=8e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62529087-62533501 transcript_region:SL2.40ch12:62529087..62533501+ go_terms:GO:0031072 functional_description:"DnaJ chaperone (AHRD V1 *-*- C1EBL7_9CHLO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00021401g0014.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|4|0|189; (*GB) gi|90111010|sp|Q33C48.1|RPOC2_NICTO (e_value=8e-35) RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; (*SWP) sp|Q33C48|RPOC2_NICTO (e_value=2e-36) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=8e-36) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc03g071770.1.1 (e_value=6e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:41688800-41689380 transcript_region:SL2.40ch03:41688800..41689380- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW65_CORFO)"; NbS00000319g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0.66|1|1|1|3|84|538; (*GB) gi|255538658|ref|XP_002510394.1| (e_value=0.0) acyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LN49|KCS4_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1;; (*TAIR) AT1G19440.1 (e_value=0.0) | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516;; (*ITAG) Solyc04g080450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00000319g0007.1 protein AED:0.30 eAED:0.30 QI:0|0.88|0.88|1|0.82|0.88|18|201|458; (*GB) gi|255538660|ref|XP_002510395.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=0.0) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1;; (*TAIR) AT1G75220.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:28229412-28232606 REVERSE LENGTH=487;; (*ITAG) Solyc04g080460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62223478-62229568 transcript_region:SL2.40ch04:62223478..62229568- go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbC23763781g0001.1 protein AED:0.12 eAED:0.59 QI:35|0|0.5|1|0|0|2|0|47; (*ITAG) Solyc06g069510.2.1 (e_value=4e-18) genomic_reference:SL2.40ch06 gene_region:39676146-39681903 transcript_region:SL2.40ch06:39676146..39681903- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 ***- Q9SD89_ARATH)"; NbS00013112g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.33|1|1|3|0|189; (*GB) gi|224089000|ref|XP_002308596.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT2G25780.1 (e_value=3e-41) | Symbols: | Protein of unknown function (DUF1677) | chr2:10995169-10995923 FORWARD LENGTH=153;; (*ITAG) Solyc08g066460.1.1 (e_value=7e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52319289-52320007 transcript_region:SL2.40ch08:52319289..52320007+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00013112g0003.1 protein AED:0.21 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|357513435|ref|XP_003627006.1| (e_value=4e-68) hypothetical protein MTR_8g013990 [Medicago truncatula];; (*TAIR) AT5G25840.1 (e_value=1e-50) | Symbols: | Protein of unknown function (DUF1677) | chr5:9010909-9011430 REVERSE LENGTH=173;; (*ITAG) Solyc08g066450.1.1 (e_value=4e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52303231-52303794 transcript_region:SL2.40ch08:52303231..52303794+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00013112g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.85|0.75|1|0.85|0.87|8|0|484; (*GB) gi|225429906|ref|XP_002283676.1| (e_value=0.0) PREDICTED: monoglyceride lipase [Vitis vinifera];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=3e-32) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT5G11650.1 (e_value=3e-173) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:3745069-3746816 FORWARD LENGTH=390;; (*ITAG) Solyc08g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52277630-52281785 transcript_region:SL2.40ch08:52277630..52281785- go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00033869g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|0.33|0.5|4|804|295; (*GB) gi|356565329|ref|XP_003550894.1| (e_value=8e-102) PREDICTED: uncharacterized protein LOC100788409 [Glycine max];; (*TAIR) AT4G22850.1 (e_value=3e-87) | Symbols: | SNARE associated Golgi protein family | chr4:11994194-11995941 FORWARD LENGTH=296;; (*ITAG) Solyc08g079670.2.1 (e_value=5e-139) genomic_reference:SL2.40ch08 gene_region:60319033-60323467 transcript_region:SL2.40ch08:60319033..60323467- functional_description:"SNARE associated Golgi protein (AHRD V1 *--- C7QSR3_CYAP0); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00033869g0007.1 protein AED:0.19 eAED:0.19 QI:164|1|1|1|1|1|5|345|234; (*GB) gi|388506850|gb|AFK41491.1| (e_value=7e-90) unknown [Lotus japonicus];; (*SWP) sp|Q8GW78|CLP41_ARATH (e_value=4e-79) Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1;; (*TAIR) AT4G12060.1 (e_value=3e-80) | Symbols: | Double Clp-N motif protein | chr4:7228269-7229898 REVERSE LENGTH=241;; (*ITAG) Solyc08g079660.2.1 (e_value=3e-117) genomic_reference:SL2.40ch08 gene_region:60314725-60318209 transcript_region:SL2.40ch08:60314725..60318209- go_terms:GO:0019538 functional_description:"ATP-dependent Clp protease ATP-binding subunit ClpC (AHRD V1 *-*- D5A5L7_SPIPL); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00009630g0005.1 protein AED:0.05 eAED:0.13 QI:0|0|0|1|0|0|2|0|179; (*GB) gi|113205171|gb|AAT40519.2| (e_value=8e-19) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc07g064380.2.1 (e_value=6e-21) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00020193g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|357528936|gb|AET80688.1| (e_value=0.0) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=6e-163) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=1e-71) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc06g074710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42628659-42629993 transcript_region:SL2.40ch06:42628659..42629993- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-* B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00019237g0007.1 protein AED:0.27 eAED:0.29 QI:300|0.84|0.80|1|0.76|0.69|26|0|988; (*GB) gi|359485106|ref|XP_002268471.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: villin-4 [Vitis vinifera];; (*SWP) sp|O65570|VILI4_ARATH (e_value=0.0) Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1;; (*TAIR) AT4G30160.1 (e_value=0.0) | Symbols: VLN4, ATVLN4 | villin 4 | chr4:14754528-14759511 FORWARD LENGTH=974;; (*ITAG) Solyc02g021420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13328830-13352997 transcript_region:SL2.40ch02:13328830..13352997- go_terms:GO:0051015 functional_description:"Gelsolin (AHRD V1 **-- B0WBT0_CULQU); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0051015 NbS00057870g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.87|1|0.28|0.25|8|425|274; (*GB) gi|359491270|ref|XP_002283664.2| (e_value=1e-115) PREDICTED: ribosomal RNA small subunit methyltransferase G-like [Vitis vinifera];; (*SWP) sp|A6TXE3|RSMG_ALKMQ (e_value=4e-55) Ribosomal RNA small subunit methyltransferase G OS=Alkaliphilus metalliredigens (strain QYMF) GN=rsmG PE=3 SV=1;; (*TAIR) AT5G50110.1 (e_value=5e-106) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20373515-20376068 FORWARD LENGTH=292;; (*ITAG) Solyc03g113860.1.1 (e_value=3e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57965045-57969229 transcript_region:SL2.40ch03:57965045..57969229- go_terms:GO:0008168 functional_description:"Ribosomal RNA small subunit methyltransferase G (AHRD V1 **** Q2B0Y7_9BACI); contains Interpro domain(s) IPR003682 Glucose inhibited division protein "; GO:0008168 NbC23850577g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|0|0|2|0|62; (*GB) gi|255546785|ref|XP_002514451.1| (e_value=5e-28) ATP-dependent RNA helicase, putative [Ricinus communis];; (*TAIR) AT5G04895.1 (e_value=4e-25) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00003681g0007.1 protein AED:0.01 eAED:0.01 QI:99|1|1|1|1|1|2|363|231; (*GB) gi|225444657|ref|XP_002276822.1| (e_value=2e-75) PREDICTED: uncharacterized protein LOC100264520 [Vitis vinifera];; (*TAIR) AT1G74940.1 (e_value=3e-35) | Symbols: | Protein of unknown function (DUF581) | chr1:28146284-28147065 FORWARD LENGTH=222;; (*ITAG) Solyc07g042190.2.1 (e_value=1e-99) genomic_reference:SL2.40ch07 gene_region:52541153-52542481 transcript_region:SL2.40ch07:52541153..52542481- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00003681g0008.1 protein AED:0.01 eAED:0.01 QI:2132|1|1|1|0.33|0.25|4|360|146 NbS00009938g0014.1 protein AED:0.09 eAED:0.09 QI:58|1|0.33|1|1|0.66|3|0|282; (*GB) gi|225425754|ref|XP_002276889.1| (e_value=2e-65) PREDICTED: homeobox-leucine zipper protein ATHB-13-like [Vitis vinifera];; (*SWP) sp|Q00466|HAT7_ARATH (e_value=5e-53) Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4;; (*TAIR) AT5G15150.1 (e_value=4e-54) | Symbols: ATHB-3, HAT7, ATHB3, HB-3 | homeobox 3 | chr5:4913951-4915609 REVERSE LENGTH=314;; (*ITAG) Solyc02g067410.1.1 (e_value=1e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32180008-32182041 transcript_region:SL2.40ch02:32180008..32182041+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00009938g0011.1 protein AED:0.28 eAED:0.28 QI:177|1|0.8|1|0.75|0.6|5|0|252; (*GB) gi|224140969|ref|XP_002323849.1| (e_value=8e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT1G14340.1 (e_value=9e-70) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc02g067390.2.1 (e_value=2e-145) genomic_reference:SL2.40ch02 gene_region:32170896-32174750 transcript_region:SL2.40ch02:32170896..32174750+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00009938g0009.1 protein AED:0.97 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|140 NbS00035719g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.91|1|0.63|0.66|12|676|769; (*GB) gi|255545520|ref|XP_002513820.1| (e_value=0.0) Oxysterol-binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L751|ORP1C_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1;; (*TAIR) AT4G08180.2 (e_value=0.0) | Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=813;; (*ITAG) Solyc11g013190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6093530-6101913 transcript_region:SL2.40ch11:6093530..6101913- functional_description:"Oxysterol-binding protein (AHRD V1 ***- A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; NbS00010408g0009.1 protein AED:0.17 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|119|414; (*GB) gi|225437781|ref|XP_002281415.1| (e_value=0.0) PREDICTED: isopenicillin N epimerase-like [Vitis vinifera];; (*SWP) sp|P18549|CEFD_STRCL (e_value=7e-15) Isopenicillin N epimerase OS=Streptomyces clavuligerus GN=cefD PE=1 SV=3;; (*TAIR) AT3G62130.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:23004994-23006358 FORWARD LENGTH=454;; (*ITAG) Solyc01g068160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69652662-69658418 transcript_region:SL2.40ch01:69652662..69658418- go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase like (AHRD V1 **-- B0JY75_MICAN); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00010408g0008.1 protein AED:0.19 eAED:0.19 QI:166|1|1|1|1|1|7|123|226; (*GB) gi|225437785|ref|XP_002281434.1| (e_value=2e-83) PREDICTED: uncharacterized protein LOC100265766 [Vitis vinifera];; (*TAIR) AT3G62140.1 (e_value=2e-67) | Symbols: | CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:23007277-23008626 FORWARD LENGTH=214;; (*ITAG) Solyc01g068150.2.1 (e_value=1e-109) genomic_reference:SL2.40ch01 gene_region:69642656-69648663 transcript_region:SL2.40ch01:69642656..69648663- functional_description:"Chromosome 11 contig 1 DNA sequence (AHRD V1 *-*- Q00YQ7_OSTTA); contains Interpro domain(s) IPR019331 NEFA-interacting nuclear protein NIP30, N-terminal "; NbS00010408g0010.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|147818959|emb|CAN67131.1| (e_value=1e-47) hypothetical protein VITISV_040172 [Vitis vinifera];; (*TAIR) AT2G47010.2 (e_value=2e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc01g068130.2.1 (e_value=1e-54) genomic_reference:SL2.40ch01 gene_region:69627835-69631398 transcript_region:SL2.40ch01:69627835..69631398- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00010408g0007.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|224068703|ref|XP_002302804.1| (e_value=4e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT2G47010.2 (e_value=4e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc01g068130.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:69627835-69631398 transcript_region:SL2.40ch01:69627835..69631398- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00010408g0012.1 protein AED:0.15 eAED:0.42 QI:0|0|0|1|0|0|4|0|172; (*GB) gi|224130862|ref|XP_002320943.1| (e_value=9e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62160.1 (e_value=8e-15) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:23014333-23015808 REVERSE LENGTH=428;; (*ITAG) Solyc01g068140.2.1 (e_value=7e-26) genomic_reference:SL2.40ch01 gene_region:69640064-69642385 transcript_region:SL2.40ch01:69640064..69642385+ go_terms:GO:0016740 functional_description:"10-deacetylbaccatin III-10-O-acetyl transferase-like (AHRD V1 **-* Q9FTH0_ORYSJ); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00003836g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|0.94|1|0.94|0.94|18|336|834; (*GB) gi|359489421|ref|XP_002273752.2| (e_value=0.0) PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q9LPC6|ARK2_ARATH (e_value=0.0) Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2;; (*TAIR) AT1G01950.1 (e_value=0.0) | Symbols: ARK2 | armadillo repeat kinesin 2 | chr1:325473-330403 FORWARD LENGTH=894;; (*ITAG) Solyc01g091480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00013379g0004.1 protein AED:0.35 eAED:0.74 QI:0|0.33|0|0.75|1|1|4|0|686; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=3e-135) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*SWP) sp|Q8IWV7|UBR1_HUMAN (e_value=6e-21) E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1;; (*TAIR) AT5G02310.1 (e_value=2e-85) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00017097g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|67; (*ITAG) Solyc11g063510.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46704761-46705058 transcript_region:SL2.40ch11:46704761..46705058+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032652g0010.1 protein AED:0.17 eAED:0.17 QI:155|0.55|0.5|1|0.55|0.5|10|0|751; (*GB) gi|302143245|emb|CBI20540.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNP1|PEX1_ARATH (e_value=4e-175) Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2;; (*TAIR) AT5G08470.1 (e_value=3e-176) | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2742731 FORWARD LENGTH=1130;; (*ITAG) Solyc04g057960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54216450-54236433 transcript_region:SL2.40ch04:54216450..54236433- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 1 (AHRD V1 *--- FTSH1_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00032652g0005.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.14|1|1|7|0|304; (*GB) gi|225465133|ref|XP_002273767.1| (e_value=2e-128) PREDICTED: peroxisome biogenesis protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FNP1|PEX1_ARATH (e_value=2e-119) Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2;; (*TAIR) AT5G08470.1 (e_value=2e-120) | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2742731 FORWARD LENGTH=1130;; (*ITAG) Solyc04g057960.2.1 (e_value=2e-144) genomic_reference:SL2.40ch04 gene_region:54216450-54236433 transcript_region:SL2.40ch04:54216450..54236433- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 1 (AHRD V1 *--- FTSH1_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00048598g0005.1 protein AED:0.39 eAED:0.46 QI:223|0.75|0.84|1|0.75|0.69|13|0|262; (*GB) gi|224132592|ref|XP_002321360.1| (e_value=5e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=4e-75) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT3G49430.3 (e_value=2e-94) | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300;; (*ITAG) Solyc03g082380.2.1 (e_value=5e-102) genomic_reference:SL2.40ch03 gene_region:45864734-45871121 transcript_region:SL2.40ch03:45864734..45871121- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- B0WP07_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00007149g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|70; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=7e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZ57|RL363_ARATH (e_value=6e-19) 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1;; (*TAIR) AT5G02450.1 (e_value=4e-20) | Symbols: | Ribosomal protein L36e family protein | chr5:533501-534394 FORWARD LENGTH=108;; (*ITAG) Solyc01g094560.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:77748472-77751106 transcript_region:SL2.40ch01:77748472..77751106- go_terms:GO:0003735 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735 NbS00007149g0006.1 protein AED:0.23 eAED:0.23 QI:161|1|1|1|1|1|4|187|157; (*GB) gi|350538955|ref|NP_001234111.1| (e_value=2e-89) non-symbiotic hemoglobin 2 [Solanum lycopersicum];; (*SWP) sp|Q941P9|HBL2_SOLLC (e_value=5e-91) Non-symbiotic hemoglobin 2 OS=Solanum lycopersicum GN=HB2 PE=2 SV=1;; (*TAIR) AT3G10520.1 (e_value=3e-79) | Symbols: AHB2, GLB2, ARATH GLB2, NSHB2, ATGLB2, HB2 | haemoglobin 2 | chr3:3276516-3277765 REVERSE LENGTH=158;; (*ITAG) Solyc03g071690.2.1 (e_value=5e-92) genomic_reference:SL2.40ch03 gene_region:41282493-41284402 transcript_region:SL2.40ch03:41282493..41284402- go_terms:GO:0005344,GO:0019825 functional_description:"Non-symbiotic hemoglobin 2 (AHRD V1 **-- D7L8Z8_ARALY); contains Interpro domain(s) IPR001032 Leghaemoglobin "; GO:0005344,GO:0019825 NbS00006234g0005.1 protein AED:0.31 eAED:0.53 QI:0|0|0|1|0|0.33|3|0|143; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-20) hypothetical protein [Nicotiana tabacum]; NbS00006234g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|12003390|gb|AAG43552.1|AF211534_1 (e_value=2e-16) Avr9/Cf-9 rapidly elicited protein 169 [Nicotiana tabacum];; (*ITAG) Solyc07g056600.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61736549-61736878 transcript_region:SL2.40ch07:61736549..61736878+ functional_description:"Tobacco rattle virus-induced protein variant 2 (AHRD V1 **-- Q5PXT0_ARATH); contains Interpro domain(s) IPR008889 VQ "; NbS00009154g0016.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|3|256|400; (*GB) gi|224119206|ref|XP_002331255.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15780.1 (e_value=2e-42) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:5144898-5146297 REVERSE LENGTH=401;; (*ITAG) Solyc02g089250.2.1 (e_value=1e-124) genomic_reference:SL2.40ch02 gene_region:45695219-45697076 transcript_region:SL2.40ch02:45695219..45697076+ functional_description:"Pollen Ole e 1 allergen and extensin (AHRD V1 *-*- Q2HSE9_MEDTR); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00009154g0017.1 protein AED:0.07 eAED:0.08 QI:4|0.68|0.45|1|0.73|0.65|20|0|4857; (*GB) gi|359488327|ref|XP_003633742.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: auxin transport protein BIG-like [Vitis vinifera];; (*SWP) sp|Q9SRU2|BIG_ARATH (e_value=0.0) Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=2 SV=2;; (*TAIR) AT3G02260.1 (e_value=0.0) | Symbols: BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 | auxin transport protein (BIG) | chr3:431152-448489 REVERSE LENGTH=5098;; (*ITAG) Solyc02g089260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45704210-45726943 transcript_region:SL2.40ch02:45704210..45726943+ go_terms:GO:0005488,GO:0008270,GO:0005622 functional_description:"E3 ubiquitin-protein ligase UBR4 (AHRD V1 *--- UBR4_HUMAN); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0005488,GO:0008270,GO:0005622 NbS00009154g0018.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|182; (*GB) gi|225451836|ref|XP_002281732.1| (e_value=2e-117) PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera];; (*SWP) sp|Q921Y2|IMP3_MOUSE (e_value=1e-72) U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1;; (*TAIR) AT5G15750.1 (e_value=4e-107) | Symbols: | Alpha-L RNA-binding motif/Ribosomal protein S4 family protein | chr5:5141449-5142701 FORWARD LENGTH=182;; (*ITAG) Solyc02g089280.2.1 (e_value=3e-127) genomic_reference:SL2.40ch02 gene_region:45730812-45733284 transcript_region:SL2.40ch02:45730812..45733284- go_terms:GO:0005515,GO:0030515 functional_description:"U3 small nucleolar ribonucleoprotein protein IMP3 (AHRD V1 **-- D0N4G4_PHYIN); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0005515,GO:0030515 NbS00009154g0001.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|177 NbS00009738g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|39 NbS00004918g0010.1 protein AED:0.15 eAED:0.15 QI:204|0.90|0.83|1|0.90|0.91|12|979|691; (*GB) gi|297734173|emb|CBI15420.3| (e_value=2e-131) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96GN5|CDA7L_HUMAN (e_value=1e-26) Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2;; (*TAIR) AT5G38690.1 (e_value=2e-60) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 protein | chr5:15479424-15482992 REVERSE LENGTH=572;; (*ITAG) Solyc02g063060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29676109-29681253 transcript_region:SL2.40ch02:29676109..29681253- functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- Q28DP7_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00004918g0011.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|0.33|0.5|4|0|266; (*GB) gi|356567180|ref|XP_003551799.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100786993 [Glycine max];; (*TAIR) AT3G02500.1 (e_value=4e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:519364-521628 FORWARD LENGTH=293;; (*ITAG) Solyc02g063030.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:29625469-29629342 transcript_region:SL2.40ch02:29625469..29629342- functional_description:"LuxR family transcriptional regulator (Fragment) (AHRD V1 *-*- D9ZBL3_9CARY)"; NbS00030982g0005.1 protein AED:0.17 eAED:0.17 QI:18|0.66|1|1|1|1|4|345|98; (*GB) gi|302142499|emb|CBI19702.3| (e_value=4e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G42770.1 (e_value=2e-34) | Symbols: | Maf-like protein | chr5:17152147-17154355 FORWARD LENGTH=206;; (*ITAG) Solyc04g080440.2.1 (e_value=2e-50) genomic_reference:SL2.40ch04 gene_region:62208525-62213336 transcript_region:SL2.40ch04:62208525..62213336- go_terms:GO:0005737 functional_description:"Maf-like protein CV_0124 (AHRD V1 ***- B6TNZ3_MAIZE); contains Interpro domain(s) IPR003697 Maf-like protein "; GO:0005737 NbS00030982g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0.33|1|1|1|3|126|100 NbS00056391g0004.1 protein AED:0.23 eAED:0.24 QI:212|1|0.8|1|1|1|5|0|226; (*GB) gi|313474112|dbj|BAJ40866.1| (e_value=2e-78) bHLH transcriptional factor [Coptis japonica];; (*SWP) sp|Q8L467|BH104_ARATH (e_value=3e-62) Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1;; (*TAIR) AT4G14410.2 (e_value=2e-63) | Symbols: bHLH104 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:8300418-8301503 FORWARD LENGTH=277;; (*ITAG) Solyc09g089870.2.1 (e_value=9e-135) genomic_reference:SL2.40ch09 gene_region:64838719-64843480 transcript_region:SL2.40ch09:64838719..64843480- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKE6_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00037454g0001.1 protein AED:0.04 eAED:0.04 QI:193|0.75|0.6|1|0.75|0.8|5|38|858; (*GB) gi|350538757|ref|NP_001234102.1| (e_value=0.0) phospholipase PLDa1 [Solanum lycopersicum];; (*SWP) sp|P93400|PLDA1_TOBAC (e_value=0.0) Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2;; (*TAIR) AT3G15730.1 (e_value=0.0) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc03g116620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60013144-60016621 transcript_region:SL2.40ch03:60013144..60016621+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00010089g0006.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.5|1|1|6|0|570; (*GB) gi|357453939|ref|XP_003597250.1| (e_value=1e-82) Ribonuclease [Medicago truncatula];; (*SWP) sp|Q0DKP4|DRB2_ORYSJ (e_value=6e-47) Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1;; (*TAIR) AT2G28380.1 (e_value=1e-46) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc05g056100.2.1 (e_value=2e-143) genomic_reference:SL2.40ch05 gene_region:64618011-64624535 transcript_region:SL2.40ch05:64618011..64624535+ go_terms:GO:0005515,GO:0003725 functional_description:"Double-stranded RNA binding protein (AHRD V1 *-** A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005515,GO:0003725 NbS00010089g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|107 NbS00005793g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|1|1|2|325|112; (*GB) gi|255541152|ref|XP_002511640.1| (e_value=5e-51) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60520.1 (e_value=9e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22361751-22362467 REVERSE LENGTH=129;; (*ITAG) Solyc10g018640.1.1 (e_value=2e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:8878025-8878684 transcript_region:SL2.40ch10:8878025..8878684- functional_description:"Zinc ion binding protein (AHRD V1 ***- D7LRR6_ARALY)"; NbS00026230g0009.1 protein AED:0.29 eAED:0.29 QI:262|0.8|1|1|0.4|0.5|6|441|350; (*GB) gi|225468218|ref|XP_002263085.1| (e_value=2e-113) PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LA53|MBD2_ARATH (e_value=6e-87) Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1;; (*TAIR) AT5G35330.3 (e_value=5e-88) | Symbols: MBD02 | methyl-CPG-binding domain protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272;; (*ITAG) Solyc05g047450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58041156-58047725 transcript_region:SL2.40ch05:58041156..58047725+ go_terms:GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 ***- B9N851_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0051747 NbS00026230g0013.1 protein AED:0.76 eAED:0.80 QI:0|0|0|0.5|0.33|0.75|4|0|269; (*GB) gi|225468218|ref|XP_002263085.1| (e_value=1e-52) PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LA53|MBD2_ARATH (e_value=4e-47) Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1;; (*TAIR) AT5G35330.3 (e_value=3e-48) | Symbols: MBD02 | methyl-CPG-binding domain protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272;; (*ITAG) Solyc05g047450.1.1 (e_value=3e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58041156-58047725 transcript_region:SL2.40ch05:58041156..58047725+ go_terms:GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 ***- B9N851_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0051747 NbS00026230g0012.1 protein AED:0.11 eAED:0.11 QI:573|0.91|0.84|1|0.58|0.69|13|536|1124; (*GB) gi|350540000|ref|NP_001234605.1| (e_value=0.0) auxin response factor 19-1 [Solanum lycopersicum];; (*SWP) sp|Q0D9R7|ARFS_ORYSJ (e_value=0.0) Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2;; (*TAIR) AT1G19220.1 (e_value=0.0) | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086;; (*ITAG) Solyc05g047460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58050744-58056799 transcript_region:SL2.40ch05:58050744..58056799- go_terms:GO:0046983 functional_description:"Auxin response factor 19 (AHRD V1 ***- D9IA29_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046983 NbC26083281g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|0|510; (*GB) gi|48210049|gb|AAT40548.1| (e_value=0.0) Putative vicilin, identical [Solanum demissum];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=2e-24) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT2G28490.1 (e_value=8e-143) | Symbols: | RmlC-like cupins superfamily protein | chr2:12178812-12180983 REVERSE LENGTH=511;; (*ITAG) Solyc11g072380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52644546-52647817 transcript_region:SL2.40ch11:52644546..52647817- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR011051 Cupin, RmlC-type "; GO:0045735 NbS00023917g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|1|0.5|0.33|3|0|325; (*GB) gi|359482322|ref|XP_002277233.2| (e_value=8e-96) PREDICTED: uncharacterized protein LOC100249368 [Vitis vinifera];; (*TAIR) AT3G52910.1 (e_value=2e-58) | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 | chr3:19616177-19618268 REVERSE LENGTH=380;; (*ITAG) Solyc10g083510.1.1 (e_value=5e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62623196-62627098 transcript_region:SL2.40ch10:62623196..62627098- go_terms:GO:0005634 functional_description:"Growth-regulating factor 2 (AHRD V1 **-- Q6AWY7_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00048837g0007.1 protein AED:0.16 eAED:0.16 QI:194|0.62|0.66|1|0.75|0.88|9|320|443; (*GB) gi|2494076|sp|P93338.1|GAPN_NICPL (e_value=0.0) RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase [NADP(+)]; AltName: Full=Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase; AltName: Full=Triosephosphate dehydrogenase;; (*SWP) sp|P93338|GAPN_NICPL (e_value=0.0) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1;; (*TAIR) AT2G24270.4 (e_value=0.0) | Symbols: ALDH11A3 | aldehyde dehydrogenase 11A3 | chr2:10327109-10329601 REVERSE LENGTH=503;; (*ITAG) Solyc07g005390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:296474-302315 transcript_region:SL2.40ch07:296474..302315+ go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** A7GLM2_BACCN); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00048837g0001.1 protein AED:0.20 eAED:0.20 QI:53|1|1|1|1|1|2|187|152; (*GB) gi|388508302|gb|AFK42217.1| (e_value=1e-32) unknown [Lotus japonicus];; (*SWP) sp|Q67A25|NCS_THLFG (e_value=5e-21) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*ITAG) Solyc07g005370.2.1 (e_value=1e-68) genomic_reference:SL2.40ch07 gene_region:288360-289609 transcript_region:SL2.40ch07:288360..289609- go_terms:GO:0032259,GO:0009607 functional_description:"Norcoclaurine synthase (AHRD V1 ***- B6E2Z2_PAPSO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0032259,GO:0009607 NbS00048837g0010.1 protein AED:0.37 eAED:0.37 QI:0|1|0|1|0|0|2|0|126; (*GB) gi|351727799|ref|NP_001237429.1| (e_value=4e-29) uncharacterized protein LOC100305838 [Glycine max];; (*SWP) sp|Q67A25|NCS_THLFG (e_value=6e-15) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*ITAG) Solyc07g005370.2.1 (e_value=3e-60) genomic_reference:SL2.40ch07 gene_region:288360-289609 transcript_region:SL2.40ch07:288360..289609- go_terms:GO:0032259,GO:0009607 functional_description:"Norcoclaurine synthase (AHRD V1 ***- B6E2Z2_PAPSO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0032259,GO:0009607 NbS00014178g0001.1 protein AED:0.21 eAED:0.35 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|225435925|ref|XP_002267920.1| (e_value=1e-74) PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93WX6|NFS2_ARATH (e_value=6e-74) Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1;; (*TAIR) AT1G08490.1 (e_value=4e-75) | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | chloroplastic NIFS-like cysteine desulfurase | chr1:2685980-2688547 REVERSE LENGTH=463;; (*ITAG) Solyc05g055000.2.1 (e_value=3e-86) genomic_reference:SL2.40ch05 gene_region:63922322-63931643 transcript_region:SL2.40ch05:63922322..63931643+ go_terms:GO:0031071,GO:0009000 functional_description:"Cysteine desulfurase (AHRD V1 **** Q10WM4_TRIEI); contains Interpro domain(s) IPR010970 Cysteine desulfurase, SufS "; GO:0031071,GO:0009000 NbS00014178g0004.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|1|1|2|0|63; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-15) hypothetical protein [Nicotiana tabacum]; NbS00014080g0006.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|0|0.5|2|242|455; (*GB) gi|225445120|ref|XP_002280513.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Vitis vinifera];; (*SWP) sp|Q3ECB8|PP128_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1;; (*TAIR) AT1G77170.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28998133-28999536 REVERSE LENGTH=467;; (*ITAG) Solyc02g080350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39178657-39180027 transcript_region:SL2.40ch02:39178657..39180027+ go_terms:GO:0005329,GO:0019534 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUG5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005329,GO:0019534 NbS00014080g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|147833189|emb|CAN68638.1| (e_value=4e-23) hypothetical protein VITISV_030805 [Vitis vinifera];; (*ITAG) Solyc02g080360.1.1 (e_value=1e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39182058-39182462 transcript_region:SL2.40ch02:39182058..39182462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055797g0005.1 protein AED:0.12 eAED:0.12 QI:435|0.61|0.57|0.92|0.53|0.5|14|0|1254; (*GB) gi|359472595|ref|XP_002281257.2| (e_value=0.0) PREDICTED: nuclear pore complex protein Nup155-like [Vitis vinifera];; (*SWP) sp|Q99P88|NU155_MOUSE (e_value=4e-36) Nuclear pore complex protein Nup155 OS=Mus musculus GN=Nup155 PE=2 SV=1;; (*TAIR) AT1G14850.1 (e_value=0.0) | Symbols: NUP155 | nucleoporin 155 | chr1:5116921-5123259 REVERSE LENGTH=1464;; (*ITAG) Solyc07g008160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2866014-2881660 transcript_region:SL2.40ch07:2866014..2881660+ go_terms:GO:0005487 functional_description:"Nuclear pore complex protein Nup155 (AHRD V1 *--- B0W0E9_CULQU); contains Interpro domain(s) IPR004870 Nucleoporin, non-repetitive/WGA-negative "; GO:0005487 NbS00038658g0004.1 protein AED:0.12 eAED:0.12 QI:704|0.75|0.88|1|0.87|0.88|9|554|496; (*GB) gi|255573419|ref|XP_002527635.1| (e_value=4e-125) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q6LA43|APRR2_ARATH (e_value=3e-66) Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2;; (*TAIR) AT4G18020.6 (e_value=2e-67) | Symbols: APRR2 | CheY-like two-component responsive regulator family protein | chr4:10003738-10006682 REVERSE LENGTH=535;; (*ITAG) Solyc06g061030.2.1 (e_value=1e-143) genomic_reference:SL2.40ch06 gene_region:35458941-35463705 transcript_region:SL2.40ch06:35458941..35463705+ go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00022659g0126.1 protein AED:0.16 eAED:0.16 QI:132|0.86|0.87|1|0.73|0.93|16|396|500 NbS00022659g0121.1 protein AED:0.31 eAED:0.31 QI:104|0.90|1|1|0.90|0.83|12|242|331 NbS00022659g0111.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.8|1|1|5|0|239 NbS00022659g0118.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0.5|1|0|0.5|4|293|110 NbS00022659g0125.1 protein AED:0.47 eAED:0.76 QI:87|0|0|0.66|0|0|3|0|44 NbS00035316g0001.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|288; (*GB) gi|225428873|ref|XP_002285113.1| (e_value=1e-87) PREDICTED: uncharacterized protein LOC100267469 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=3e-76) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc01g107800.2.1 (e_value=5e-139) genomic_reference:SL2.40ch01 gene_region:86978546-86980025 transcript_region:SL2.40ch01:86978546..86980025- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV16_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00030575g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|58042457|gb|AAW63669.1| (e_value=4e-59) NADH dehydrogenase subunit 2 [Lonicera sp. Bergthorsson 0301];; (*SWP) sp|O05000|NU2M_ARATH (e_value=7e-52) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=4e-56) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g125990.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00018009g0003.1 protein AED:0.10 eAED:0.10 QI:74|1|1|1|1|1|2|19|308; (*GB) gi|284449851|emb|CBJ19440.1| (e_value=5e-109) SLAC-homologous 1 protein [Citrus clementina];; (*SWP) sp|Q5E930|SLAH1_ARATH (e_value=3e-95) S-type anion channel SLAH1 OS=Arabidopsis thaliana GN=SLAH1 PE=2 SV=1;; (*TAIR) AT1G62280.1 (e_value=3e-96) | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007309-23008540 REVERSE LENGTH=385;; (*ITAG) Solyc07g051950.2.1 (e_value=2e-134) genomic_reference:SL2.40ch07 gene_region:57828047-57830728 transcript_region:SL2.40ch07:57828047..57830728- go_terms:GO:0016021 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 ***- D7KUS7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0016021 NbS00049266g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|0.5|0.66|3|861|441; (*GB) gi|296083240|emb|CBI22876.3| (e_value=8e-111) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G06620.1 (e_value=4e-81) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr3:2062833-2067138 REVERSE LENGTH=773;; (*ITAG) Solyc12g099250.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00049266g0006.1 protein AED:0.15 eAED:0.16 QI:1742|0.5|0.57|1|0.66|0.71|7|246|577; (*GB) gi|224108736|ref|XP_002314950.1| (e_value=7e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67890.1 (e_value=1e-94) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr1:25457345-25462436 FORWARD LENGTH=765;; (*ITAG) Solyc12g099250.1.1 (e_value=2e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00030058g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.55|0.77|0.87|0.77|9|0|271; (*GB) gi|356515196|ref|XP_003526287.1| (e_value=7e-133) PREDICTED: ELMO domain-containing protein A-like [Glycine max];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=1e-24) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT1G03620.1 (e_value=1e-121) | Symbols: | ELMO/CED-12 family protein | chr1:904319-906013 REVERSE LENGTH=265;; (*ITAG) Solyc10g008470.2.1 (e_value=9e-166) genomic_reference:SL2.40ch10 gene_region:2589756-2594867 transcript_region:SL2.40ch10:2589756..2594867+ go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein 1 (AHRD V1 **-- B5X1Y9_SALSA); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00030058g0116.1 protein AED:0.27 eAED:0.27 QI:132|1|1|1|0.75|0.6|5|732|163 NbS00030058g0110.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.33|1|1|1|6|0|266 NbS00030058g0103.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|82 NbS00030058g0114.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.33|0|0.33|3|0|92 NbS00030058g0115.1 protein AED:0.25 eAED:0.43 QI:0|0|0|1|0|0|3|0|74 NbS00011349g0002.1 protein AED:0.09 eAED:0.09 QI:235|0|0.5|1|0|0.5|2|0|442; (*GB) gi|225428312|ref|XP_002282945.1| (e_value=0.0) PREDICTED: probable anion transporter 5 [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=0.0) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=0.0) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00011349g0006.1 protein AED:0.12 eAED:0.12 QI:399|1|1|1|1|1|12|103|861; (*GB) gi|225435510|ref|XP_002285548.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera];; (*TAIR) AT5G12950.1 (e_value=0.0) | Symbols: | Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4093117-4096806 FORWARD LENGTH=861;; (*ITAG) Solyc12g100120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65308503-65313592 transcript_region:SL2.40ch12:65308503..65313592+ functional_description:"Acetyl-CoA carboxylase-like protein (AHRD V1 *-*- Q8ABH3_BACTN); contains Interpro domain(s) IPR012878 Protein of unknown function DUF1680 "; NbS00057188g0005.1 protein AED:0.10 eAED:0.15 QI:28|0.5|0.2|0.8|0.75|0.6|5|0|404; (*GB) gi|224124646|ref|XP_002330075.1| (e_value=1e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AC1|STR6_ARATH (e_value=7e-152) Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1;; (*TAIR) AT1G09280.1 (e_value=5e-153) | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581;; (*ITAG) Solyc01g100730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82448519-82456371 transcript_region:SL2.40ch01:82448519..82456371+ functional_description:"UPF0176 protein yceA (AHRD V1 *--- YCEA_ECOL6); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00055294g0003.1 protein AED:0.20 eAED:0.20 QI:161|0.75|0.55|1|0.5|0.66|9|0|766; (*GB) gi|224123024|ref|XP_002318975.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56230.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1399) | chr1:21046111-21048959 REVERSE LENGTH=752;; (*ITAG) Solyc01g099980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81827984-81833604 transcript_region:SL2.40ch01:81827984..81833604- functional_description:"Glycine-rich protein (AHRD V1 *--- D7M9Z2_ARALY); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00013756g0002.1 protein AED:0.31 eAED:0.31 QI:221|0.8|0.83|1|0.4|0.33|6|823|106; (*GB) gi|224057892|ref|XP_002299376.1| (e_value=9e-11) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g018120.1.1 (e_value=6e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20042569-20043201 transcript_region:SL2.40ch05:20042569..20043201- go_terms:GO:0016986 functional_description:"Transcription initiation factor TFIID subunit 11 (AHRD V1 **** B6UGD0_MAIZE); contains Interpro domain(s) IPR006809 TAFII28-like protein "; GO:0016986 NbS00013756g0102.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.66|1|1|3|0|189 NbS00005947g0009.1 protein AED:0.10 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|994; (*GB) gi|225460909|ref|XP_002278970.1| (e_value=7e-158) PREDICTED: uncharacterized protein LOC100250252 [Vitis vinifera];; (*SWP) sp|D3ZTQ1|SFSWA_RAT (e_value=4e-12) Splicing factor, suppressor of white-apricot homolog OS=Rattus norvegicus GN=Sfswap PE=2 SV=1;; (*TAIR) AT5G55100.2 (e_value=5e-66) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr5:22361401-22364664 REVERSE LENGTH=844;; (*ITAG) Solyc10g006260.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:932083-935352 transcript_region:SL2.40ch10:932083..935352+ go_terms:GO:0006396 functional_description:"Suppressor of white-apricot (AHRD V1 *--- B3P9D6_DROER); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00005947g0010.1 protein AED:0.23 eAED:0.26 QI:124|0.57|0.75|0.87|0.57|0.87|8|375|251; (*GB) gi|147861921|emb|CAN80917.1| (e_value=2e-115) hypothetical protein VITISV_024616 [Vitis vinifera];; (*SWP) sp|O94903|PROSC_HUMAN (e_value=1e-44) Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1;; (*TAIR) AT4G26860.1 (e_value=2e-105) | Symbols: | Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr4:13503291-13504693 REVERSE LENGTH=244;; (*ITAG) Solyc10g006240.2.1 (e_value=9e-134) genomic_reference:SL2.40ch10 gene_region:925645-930022 transcript_region:SL2.40ch10:925645..930022- go_terms:GO:0042802,GO:0030170 functional_description:"Proline synthetase co-transcribed bacterial homolog protein (AHRD V1 **-- C1BF86_ONCMY); contains Interpro domain(s) IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "; GO:0042802,GO:0030170 NbS00013376g0016.1 protein AED:0.29 eAED:0.31 QI:0|0.66|0.4|1|0.77|0.6|10|0|777; (*GB) gi|255573075|ref|XP_002527467.1| (e_value=2e-114) Homeobox protein HAT3.1, putative [Ricinus communis];; (*SWP) sp|P48786|PRH_PETCR (e_value=2e-83) Pathogenesis-related homeodomain protein OS=Petroselinum crispum GN=PRH PE=2 SV=1;; (*TAIR) AT3G19510.1 (e_value=1e-80) | Symbols: HAT3.1 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr3:6763205-6766049 REVERSE LENGTH=723;; (*ITAG) Solyc01g107410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86742674-86750095 transcript_region:SL2.40ch01:86742674..86750095+ go_terms:GO:0008270,GO:0006355,GO:0045449 functional_description:"PHD-finger family homeodomain protein (Fragment) (AHRD V1 *--- Q8H990_ORYSJ); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270,GO:0006355,GO:0045449 NbS00013376g0017.1 protein AED:0.32 eAED:0.32 QI:233|0.83|1|1|0.66|0.85|7|244|277; (*GB) gi|359475460|ref|XP_002270710.2| (e_value=5e-145) PREDICTED: TIP41-like protein-like [Vitis vinifera];; (*SWP) sp|Q54MI6|TIPRL_DICDI (e_value=3e-34) TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1;; (*TAIR) AT4G34270.1 (e_value=8e-130) | Symbols: | TIP41-like family protein | chr4:16404138-16406153 REVERSE LENGTH=290;; (*ITAG) Solyc10g049850.1.1 (e_value=1e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:42439242-42449952 transcript_region:SL2.40ch10:42439242..42449952+ go_terms:GO:0005515 functional_description:"TIP41-like protein (AHRD V1 ***- B2XBN7_SALSA); contains Interpro domain(s) IPR007303 TIP41-like protein "; GO:0005515 NbS00013376g0002.1 protein AED:0.15 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|225429303|ref|XP_002270096.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243866 [Vitis vinifera];; (*TAIR) AT2G15020.1 (e_value=4e-169) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6491706-6493286 REVERSE LENGTH=526;; (*ITAG) Solyc01g107460.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:86769155-86770191 transcript_region:SL2.40ch01:86769155..86770191- functional_description:"Unknown Protein (AHRD V1)"; NbS00013376g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|224056210|ref|XP_002298757.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39266|ZFP7_ARATH (e_value=4e-17) Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1;; (*TAIR) AT1G24625.1 (e_value=3e-18) | Symbols: ZFP7 | zinc finger protein 7 | chr1:8726009-8726638 REVERSE LENGTH=209;; (*ITAG) Solyc01g107430.2.1 (e_value=8e-115) genomic_reference:SL2.40ch01 gene_region:86756484-86757583 transcript_region:SL2.40ch01:86756484..86757583- go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U599_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013376g0015.1 protein AED:0.65 eAED:0.65 QI:5|0|0.33|0.66|0.5|0.33|3|0|77 NbS00013376g0114.1 protein AED:0.02 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|231 NbS00013376g0116.1 protein AED:0.13 eAED:0.14 QI:0|0.25|0.2|1|0.75|0.6|5|0|220 NbS00013376g0115.1 protein AED:0.14 eAED:0.14 QI:154|0.5|0.66|1|1|1|3|363|127 NbS00013376g0113.1 protein AED:0.19 eAED:0.21 QI:0|0.69|0.75|0.87|0.69|0.70|24|236|1202 NbS00061396g0003.1 protein AED:0.06 eAED:0.06 QI:16|1|1|1|1|1|8|342|640; (*GB) gi|359481698|ref|XP_002277149.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-79) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G37980.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638;; (*ITAG) Solyc10g085050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63686116-63688589 transcript_region:SL2.40ch10:63686116..63688589- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 *-*- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00000863g0016.1 protein AED:0.01 eAED:0.01 QI:368|1|0.5|1|1|0.5|2|197|36 NbS00000863g0022.1 protein AED:0.13 eAED:0.15 QI:0|0.58|0.46|0.92|0.66|0.61|13|203|680; (*GB) gi|359475869|ref|XP_002283146.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252640 [Vitis vinifera];; (*SWP) sp|Q5XET6|PUS3_ARATH (e_value=2e-56) RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=2e-174) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc08g029190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22914324-22916720 transcript_region:SL2.40ch08:22914324..22916720+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00000863g0023.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|0|0.16|6|0|682; (*GB) gi|359483685|ref|XP_002263372.2| (e_value=2e-131) PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=9e-66) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=7e-67) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g068820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000863g0005.1 protein AED:0.37 eAED:0.37 QI:0|1|0|1|1|1|2|0|296; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-76) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47090.1 (e_value=1e-78) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17341512-17344645 REVERSE LENGTH=1009;; (*ITAG) Solyc06g006020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1036961-1040075 transcript_region:SL2.40ch06:1036961..1040075- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000863g0019.1 protein AED:0.05 eAED:0.05 QI:472|1|0.66|1|0.5|0.66|3|0|264; (*GB) gi|118485524|gb|ABK94615.1| (e_value=1e-45) unknown [Populus trichocarpa];; (*TAIR) AT5G05830.1 (e_value=1e-36) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc06g005850.2.1 (e_value=7e-81) genomic_reference:SL2.40ch06 gene_region:871263-874146 transcript_region:SL2.40ch06:871263..874146+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00000863g0020.1 protein AED:0.23 eAED:0.25 QI:134|0.4|0.66|1|0.4|0.66|6|144|487; (*GB) gi|351713115|gb|EHB16034.1| (e_value=2e-153) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|P29516|TBB8_ARATH (e_value=3e-147) Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2;; (*TAIR) AT5G23860.2 (e_value=2e-148) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc06g005910.2.1 (e_value=2e-149) genomic_reference:SL2.40ch06 gene_region:898125-901266 transcript_region:SL2.40ch06:898125..901266+ go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9GWG9_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00002648g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.87|1|1|1|8|0|553; (*GB) gi|359473688|ref|XP_003631348.1| (e_value=0.0) PREDICTED: helicase SWR1-like [Vitis vinifera];; (*SWP) sp|Q9H4L7|SMRCD_HUMAN (e_value=3e-63) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=2;; (*TAIR) AT2G02090.1 (e_value=0.0) | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:523481-526884 FORWARD LENGTH=763;; (*ITAG) Solyc02g014770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:9559617-9577970 transcript_region:SL2.40ch02:9559617..9577970+ go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 6 (AHRD V1 **-* CHD6_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbC25914134g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|0|0|2|0|71; (*ITAG) Solyc04g008500.2.1 (e_value=4e-14) genomic_reference:SL2.40ch04 gene_region:2123723-2129872 transcript_region:SL2.40ch04:2123723..2129872+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU0_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00023291g0009.1 protein AED:0.73 eAED:0.82 QI:0|0|0|0.4|1|1|5|0|80 NbS00023291g0017.1 protein AED:0.18 eAED:0.18 QI:354|0.87|0.77|1|0.75|0.77|9|395|489; (*GB) gi|224078315|ref|XP_002305520.1| (e_value=1e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUE0|PEK12_ARATH (e_value=8e-19) Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2;; (*TAIR) AT2G16750.1 (e_value=7e-69) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:7271786-7274446 FORWARD LENGTH=617;; (*ITAG) Solyc01g111570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89560023-89563887 transcript_region:SL2.40ch01:89560023..89563887+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00023291g0016.1 protein AED:0.08 eAED:0.18 QI:0|0|0|1|0|0|2|0|193; (*ITAG) Solyc05g010510.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4716024-4717081 transcript_region:SL2.40ch05:4716024..4717081+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00039083g0004.1 protein AED:0.12 eAED:0.13 QI:0|0.57|0.37|1|0.85|0.75|8|0|570; (*GB) gi|359480867|ref|XP_003632535.1| (e_value=2e-151) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=4e-103) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.3 (e_value=3e-104) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=572;; (*ITAG) Solyc04g071920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56533615-56536340 transcript_region:SL2.40ch04:56533615..56536340- go_terms:GO:0005515,GO:0016301 functional_description:"Cell division protein kinase 13 (AHRD V1 *-** CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00003835g0005.1 protein AED:0.17 eAED:0.21 QI:0|0.88|0.81|0.96|0.76|0.81|27|0|1104; (*GB) gi|359487166|ref|XP_002263835.2| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis vinifera];; (*SWP) sp|Q9H9Y6|RPA2_HUMAN (e_value=0.0) DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2;; (*TAIR) AT1G29940.1 (e_value=0.0) | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:10479322-10486670 REVERSE LENGTH=1178;; (*ITAG) Solyc01g086710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73420388-73436710 transcript_region:SL2.40ch01:73420388..73436710+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SVH7_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00000194g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|225440506|ref|XP_002272579.1| (e_value=3e-80) PREDICTED: uncharacterized protein LOC100254612 [Vitis vinifera];; (*TAIR) AT2G37880.1 (e_value=2e-78) | Symbols: | Protein of unknown function, DUF617 | chr2:15860705-15861448 FORWARD LENGTH=247;; (*ITAG) Solyc09g011350.1.1 (e_value=7e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4686265-4687011 transcript_region:SL2.40ch09:4686265..4687011+ functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TGK3_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00000194g0003.1 protein AED:0.24 eAED:0.30 QI:0|0.5|0.66|1|0.87|0.77|9|696|448; (*GB) gi|225440504|ref|XP_002272506.1| (e_value=1e-136) PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera];; (*TAIR) AT2G37860.3 (e_value=4e-127) | Symbols: LCD1 | Protein of unknown function (DUF3411) | chr2:15856952-15858793 FORWARD LENGTH=432;; (*ITAG) Solyc09g011340.2.1 (e_value=3e-163) genomic_reference:SL2.40ch09 gene_region:4674684-4681714 transcript_region:SL2.40ch09:4674684..4681714+ functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; NbS00018052g0005.1 protein AED:0.08 eAED:0.08 QI:25|0.75|0.88|0.88|0.62|0.55|9|312|415; (*GB) gi|359492836|ref|XP_002284225.2| (e_value=1e-140) PREDICTED: 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase-like [Vitis vinifera];; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=1e-87) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1;; (*TAIR) AT1G22170.1 (e_value=7e-137) | Symbols: | Phosphoglycerate mutase family protein | chr1:7826603-7828055 FORWARD LENGTH=334;; (*ITAG) Solyc04g054820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52438014-52442516 transcript_region:SL2.40ch04:52438014..52442516+ go_terms:GO:0046538 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 "; GO:0046538 NbS00013073g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.90|1|1|1|11|0|469; (*GB) gi|255564836|ref|XP_002523412.1| (e_value=0.0) lysyl-tRNA synthetase, putative [Ricinus communis];; (*SWP) sp|Q8DMA9|SYK_THEEB (e_value=2e-177) Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1;; (*TAIR) AT3G13490.1 (e_value=0.0) | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class II | chr3:4395984-4399302 REVERSE LENGTH=602;; (*ITAG) Solyc01g005540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:359831-370398 transcript_region:SL2.40ch01:359831..370398- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SBP3_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00005419g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|446; (*GB) gi|356547277|ref|XP_003542042.1| (e_value=0.0) PREDICTED: D-inositol-3-phosphate glycosyltransferase-like [Glycine max];; (*TAIR) AT5G59070.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:23845237-23847329 FORWARD LENGTH=505;; (*ITAG) Solyc12g056050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47376237-47377694 transcript_region:SL2.40ch12:47376237..47377694- go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 (AHRD V1 ***- D9QTS6_9FIRM); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00023393g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|0|2|0|291; (*GB) gi|147811594|emb|CAN68183.1| (e_value=1e-144) hypothetical protein VITISV_028562 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=3e-89) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT3G03670.1 (e_value=5e-70) | Symbols: | Peroxidase superfamily protein | chr3:901985-903349 REVERSE LENGTH=321;; (*ITAG) Solyc01g101050.2.1 (e_value=1e-161) genomic_reference:SL2.40ch01 gene_region:82670553-82671695 transcript_region:SL2.40ch01:82670553..82671695+ go_terms:GO:0004601 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00023393g0007.1 protein AED:0.18 eAED:0.18 QI:226|1|1|1|1|1|12|281|427; (*GB) gi|255543008|ref|XP_002512567.1| (e_value=0.0) ATP-citrate synthase, putative [Ricinus communis];; (*SWP) sp|O80526|ACLA3_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 3 OS=Arabidopsis thaliana GN=ACLA-3 PE=2 SV=1;; (*TAIR) AT1G09430.1 (e_value=0.0) | Symbols: ACLA-3 | ATP-citrate lyase A-3 | chr1:3042135-3044978 FORWARD LENGTH=424;; (*ITAG) Solyc01g101040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82660502-82665331 transcript_region:SL2.40ch01:82660502..82665331+ go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-3 (AHRD V1 **** D7KJQ3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00024149g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0.5|2|0|407; (*GB) gi|225458109|ref|XP_002280770.1| (e_value=3e-139) PREDICTED: S-type anion channel SLAH1 [Vitis vinifera];; (*SWP) sp|Q5E930|SLAH1_ARATH (e_value=1e-113) S-type anion channel SLAH1 OS=Arabidopsis thaliana GN=SLAH1 PE=2 SV=1;; (*TAIR) AT1G62280.1 (e_value=1e-114) | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007309-23008540 REVERSE LENGTH=385;; (*ITAG) Solyc04g080990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62645844-62647955 transcript_region:SL2.40ch04:62645844..62647955+ go_terms:GO:0016021 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 ***- D7KUS7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0016021 NbS00010492g0003.1 protein AED:0.04 eAED:0.04 QI:77|1|1|1|0.57|0.75|8|270|530; (*GB) gi|359486900|ref|XP_002269110.2| (e_value=0.0) PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Vitis vinifera];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc05g055410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64209316-64213691 transcript_region:SL2.40ch05:64209316..64213691- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-* A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00024448g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|146; (*ITAG) Solyc10g047880.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056810g0003.1 protein AED:0.09 eAED:0.11 QI:39|1|0.5|1|1|1|2|0|453; (*GB) gi|225437195|ref|XP_002280864.1| (e_value=6e-169) PREDICTED: 3-ketoacyl-CoA synthase 17-like [Vitis vinifera];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=2e-146) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=1e-147) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc09g083050.2.1 (e_value=1e-153) genomic_reference:SL2.40ch09 gene_region:64116693-64119344 transcript_region:SL2.40ch09:64116693..64119344- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00052556g0016.1 protein AED:0.05 eAED:0.13 QI:0|0|0|0.8|0|0.2|5|0|453 NbS00052556g0009.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|1|1|2|0|388; (*GB) gi|224095851|ref|XP_002310494.1| (e_value=6e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT1G58120.1 (e_value=9e-50) | Symbols: | BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420;; (*ITAG) Solyc01g105720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85547901-85549804 transcript_region:SL2.40ch01:85547901..85549804+ functional_description:"Unknown Protein (AHRD V1)"; NbS00052556g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|267; (*ITAG) Solyc01g105770.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:85579929-85581435 transcript_region:SL2.40ch01:85579929..85581435- functional_description:"Unknown Protein (AHRD V1)"; NbS00052556g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|239; (*ITAG) Solyc04g007810.1.1 (e_value=6e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:1494643-1495062 transcript_region:SL2.40ch04:1494643..1495062- functional_description:"Unknown Protein (AHRD V1)"; NbS00052556g0014.1 protein AED:0.66 eAED:0.66 QI:0|0.5|0|1|1|1|3|0|61; (*GB) gi|350538313|ref|NP_001233825.1| (e_value=4e-34) CONSTANS interacting protein 3 [Solanum lycopersicum];; (*SWP) sp|Q8LGG0|FKB12_ARATH (e_value=2e-29) Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Arabidopsis thaliana GN=FKBP12 PE=1 SV=2;; (*TAIR) AT5G64350.1 (e_value=2e-30) | Symbols: FKBP12, ATFKBP12 | FK506-binding protein 12 | chr5:25734810-25735990 REVERSE LENGTH=112;; (*ITAG) Solyc01g105710.2.1 (e_value=7e-37) genomic_reference:SL2.40ch01 gene_region:85539000-85541482 transcript_region:SL2.40ch01:85539000..85541482- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- A6RSK7_BOTFB); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00052556g0015.1 protein AED:0.12 eAED:0.66 QI:0|0|0|1|1|0.5|2|0|530; (*GB) gi|297827361|ref|XP_002881563.1| (e_value=2e-72) proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O80436|PTR29_ARATH (e_value=1e-71) Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1;; (*TAIR) AT2G38100.1 (e_value=9e-73) | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr2:15948484-15950228 REVERSE LENGTH=521;; (*ITAG) Solyc09g014220.2.1 (e_value=1e-40) genomic_reference:SL2.40ch09 gene_region:5712333-5715002 transcript_region:SL2.40ch09:5712333..5715002- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00048476g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|1083; (*GB) gi|147827247|emb|CAN70971.1| (e_value=0.0) hypothetical protein VITISV_009202 [Vitis vinifera];; (*SWP) sp|Q9SHI2|Y1723_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2;; (*TAIR) AT1G17230.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:5891375-5894855 FORWARD LENGTH=1101;; (*ITAG) Solyc07g056410.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61592602-61596698 transcript_region:SL2.40ch07:61592602..61596698- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00005666g0006.1 protein AED:0.38 eAED:0.38 QI:269|0.66|0.75|1|0.66|0.5|4|0|306; (*GB) gi|255561919|ref|XP_002521968.1| (e_value=0.0) serine/threonine protein phosphatase, putative [Ricinus communis];; (*SWP) sp|P48489|PP1_ORYSJ (e_value=0.0) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2;; (*TAIR) AT2G39840.1 (e_value=0.0) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g053630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32955489-32960911 transcript_region:SL2.40ch06:32955489..32960911- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9S7J9_RICCO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00034003g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.33|1|1|3|0|170; (*ITAG) Solyc11g012550.1.1 (e_value=3e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5357146-5365080 transcript_region:SL2.40ch11:5357146..5365080+ functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012990g0006.1 protein AED:0.36 eAED:0.36 QI:0|0.86|0.81|1|0.73|0.81|16|0|601; (*GB) gi|225463572|ref|XP_002270172.1| (e_value=0.0) PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera];; (*TAIR) AT1G15740.1 (e_value=0.0) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc03g117420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60607772-60622320 transcript_region:SL2.40ch03:60607772..60622320- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 ***- D7KDI8_ARALY); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515 NbS00005485g0004.1 protein AED:0.09 eAED:0.09 QI:329|1|1|1|1|1|2|361|398; (*GB) gi|350539936|ref|NP_001233815.1| (e_value=2e-148) TCP transcription factor 17 [Solanum lycopersicum];; (*SWP) sp|Q93Z00|TCP14_ARATH (e_value=3e-52) Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1;; (*TAIR) AT3G47620.1 (e_value=2e-53) | Symbols: AtTCP14, TCP14 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 | chr3:17559004-17560473 FORWARD LENGTH=489;; (*ITAG) Solyc06g070900.2.1 (e_value=3e-151) genomic_reference:SL2.40ch06 gene_region:39921969-39923714 transcript_region:SL2.40ch06:39921969..39923714+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00000480g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|306035016|gb|ADM83596.1| (e_value=1e-103) adenylate cyclase [Ipomoea nil];; (*TAIR) AT2G11890.1 (e_value=3e-62) | Symbols: | adenylate cyclases | chr2:4802999-4803631 FORWARD LENGTH=210;; (*ITAG) Solyc06g068290.1.1 (e_value=2e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38702858-38703466 transcript_region:SL2.40ch06:38702858..38703466+ go_terms:GO:0006171 functional_description:"Adenylate cyclase (AHRD V1 ***- D7LB43_ARALY); contains Interpro domain(s) IPR008172 Adenylate cyclase "; GO:0006171 NbS00000480g0003.1 protein AED:0.18 eAED:0.18 QI:166|0|0.5|0.5|1|1|2|0|65 NbS00041937g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.88|0.9|10|212|491; (*GB) gi|359485642|ref|XP_002271447.2| (e_value=0.0) PREDICTED: protein argonaute 16-like [Vitis vinifera];; (*SWP) sp|Q6YSJ5|AGO16_ORYSJ (e_value=0.0) Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2;; (*TAIR) AT2G27040.2 (e_value=4e-170) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc07g049500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57093533-57104122 transcript_region:SL2.40ch07:57093533..57104122- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00007605g0005.1 protein AED:0.05 eAED:0.05 QI:432|1|1|1|0.5|0.66|3|332|148; (*GB) gi|356533377|ref|XP_003535241.1| (e_value=1e-51) PREDICTED: xylosyltransferase 2-like [Glycine max];; (*TAIR) AT3G24040.1 (e_value=1e-45) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:8681118-8683211 REVERSE LENGTH=417;; (*ITAG) Solyc05g053490.2.1 (e_value=3e-92) genomic_reference:SL2.40ch05 gene_region:62715754-62721624 transcript_region:SL2.40ch05:62715754..62721624+ go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00048991g0003.1 protein AED:0.30 eAED:0.30 QI:258|1|0.66|1|1|1|3|0|212; (*GB) gi|359493157|ref|XP_003634526.1| (e_value=4e-78) PREDICTED: uncharacterized protein LOC100854952 [Vitis vinifera];; (*TAIR) AT4G09830.1 (e_value=6e-56) | Symbols: | Uncharacterised conserved protein UCP009193 | chr4:6188866-6190591 FORWARD LENGTH=191;; (*ITAG) Solyc12g056630.1.1 (e_value=5e-85) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47968363-47975402 transcript_region:SL2.40ch12:47968363..47975402- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00016049g0003.1 protein AED:0.79 eAED:0.84 QI:41|0|0|0.5|0.66|0.5|4|0|119; (*GB) gi|255555843|ref|XP_002518957.1| (e_value=3e-15) transporter, putative [Ricinus communis];; (*TAIR) AT1G10390.2 (e_value=1e-14) | Symbols: | Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041;; (*ITAG) Solyc02g093330.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:48807406-48814692 transcript_region:SL2.40ch02:48807406..48814692+ go_terms:GO:0005215 functional_description:"Nup98 (Fragment) (AHRD V1 *--- A1YK38_DROME); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00023794g0005.1 protein AED:0.53 eAED:0.65 QI:42|0.5|0|0.66|1|1|3|0|61; (*GB) gi|388520493|gb|AFK48308.1| (e_value=5e-29) unknown [Lotus japonicus];; (*SWP) sp|Q9C6Z2|NUD25_ARATH (e_value=2e-30) Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1;; (*TAIR) AT1G30110.2 (e_value=2e-31) | Symbols: NUDX25 | nudix hydrolase homolog 25 | chr1:10582700-10583821 FORWARD LENGTH=175;; (*ITAG) Solyc05g008000.2.1 (e_value=3e-33) genomic_reference:SL2.40ch05 gene_region:2429400-2433589 transcript_region:SL2.40ch05:2429400..2433589+ go_terms:GO:0004081,GO:0034432 functional_description:"RNA pyrophosphohydrolase (AHRD V1 ***- C9CZW5_9RHOB); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0004081,GO:0034432 NbS00022202g0007.1 protein AED:0.08 eAED:0.12 QI:0|0.72|0.5|1|0.81|0.83|12|0|333; (*GB) gi|147789493|emb|CAN67413.1| (e_value=2e-171) hypothetical protein VITISV_005886 [Vitis vinifera];; (*SWP) sp|P05414|GOX_SPIOL (e_value=9e-169) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G14420.2 (e_value=1e-168) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821804-4823899 FORWARD LENGTH=367;; (*ITAG) Solyc08g048250.2.1 (e_value=9e-177) genomic_reference:SL2.40ch08 gene_region:38457698-38464744 transcript_region:SL2.40ch08:38457698..38464744- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0RY96_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00034163g0004.1 protein AED:0.19 eAED:0.19 QI:166|1|0.8|1|1|1|10|0|571; (*GB) gi|255570972|ref|XP_002526437.1| (e_value=0.0) All-trans-retinol 13,14-reductase precursor, putative [Ricinus communis];; (*SWP) sp|Q2VEX9|CRTSO_DAUCA (e_value=8e-51) Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1;; (*TAIR) AT1G57770.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr1:21395254-21398135 FORWARD LENGTH=574;; (*ITAG) Solyc05g010180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4377503-4382261 transcript_region:SL2.40ch05:4377503..4382261- go_terms:GO:0016491 functional_description:"Carotenoid isomerase-like"; GO:0016491 NbS00007161g0004.1 protein AED:0.30 eAED:0.30 QI:333|1|1|1|1|1|4|379|364; (*GB) gi|359473655|ref|XP_002270371.2| (e_value=5e-148) PREDICTED: probable S-acyltransferase At3g18620-like [Vitis vinifera];; (*SWP) sp|Q9LIH7|ZDHC7_ARATH (e_value=2e-124) Probable S-acyltransferase At3g18620 OS=Arabidopsis thaliana GN=At3g18620 PE=2 SV=1;; (*TAIR) AT3G18620.1 (e_value=1e-125) | Symbols: | DHHC-type zinc finger family protein | chr3:6408849-6410716 FORWARD LENGTH=345;; (*ITAG) Solyc04g009380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2807742-2815384 transcript_region:SL2.40ch04:2807742..2815384+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00007161g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|1|1|4|0|201; (*GB) gi|297738248|emb|CBI27449.3| (e_value=3e-75) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G19900.1 (e_value=8e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | chr3:6922852-6924557 REVERSE LENGTH=222;; (*ITAG) Solyc04g009370.2.1 (e_value=3e-128) genomic_reference:SL2.40ch04 gene_region:2800746-2806524 transcript_region:SL2.40ch04:2800746..2806524- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q013I8_OSTTA)"; NbS00008633g0012.1 protein AED:0.08 eAED:0.08 QI:129|0.87|1|1|0.62|0.88|9|252|345; (*GB) gi|297741049|emb|CBI31361.3| (e_value=2e-172) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9H974|QTRD1_HUMAN (e_value=4e-44) Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Homo sapiens GN=QTRTD1 PE=1 SV=1;; (*ITAG) Solyc12g017690.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:7205303-7215249 transcript_region:SL2.40ch12:7205303..7215249- go_terms:GO:0008479,GO:0005515 functional_description:"Queuine tRNA-ribosyltransferase (AHRD V1 **** C1EBM6_9CHLO); contains Interpro domain(s) IPR002616 Queuine/other tRNA-ribosyltransferase "; GO:0008479,GO:0005515 NbS00008633g0001.1 protein AED:0.20 eAED:0.20 QI:187|0.81|0.83|1|0.90|0.83|12|804|335; (*GB) gi|225449158|ref|XP_002278274.1| (e_value=3e-154) PREDICTED: Golgi to ER traffic protein 4 homolog [Vitis vinifera];; (*SWP) sp|Q54TH4|GET4_DICDI (e_value=2e-27) Golgi to ER traffic protein 4 homolog OS=Dictyostelium discoideum GN=DDB_G0281815 PE=3 SV=1;; (*TAIR) AT5G63220.1 (e_value=1e-127) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr5:25353256-25355410 REVERSE LENGTH=324;; (*ITAG) Solyc12g017820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7439542-7444845 transcript_region:SL2.40ch12:7439542..7444845+ go_terms:GO:0005515 functional_description:"DUF410 domain protein (AHRD V1 **-- A1CM30_ASPCL); contains Interpro domain(s) IPR007317 Uncharacterised protein family UPF0363 "; GO:0005515 NbS00025865g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|190333406|gb|ACE73696.1| (e_value=3e-115) DREB4 [Nicotiana tabacum];; (*SWP) sp|Q9M0L0|DRE1A_ARATH (e_value=1e-61) Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2;; (*TAIR) AT4G25480.1 (e_value=1e-62) | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018353-13019003 REVERSE LENGTH=216;; (*ITAG) Solyc03g026270.1.1 (e_value=9e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8091698-8092315 transcript_region:SL2.40ch03:8091698..8092315+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00016877g0006.1 protein AED:0.01 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|329; (*GB) gi|356565461|ref|XP_003550958.1| (e_value=1e-80) PREDICTED: transcription factor RAX3-like [Glycine max];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=8e-74) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT3G49690.1 (e_value=6e-75) | Symbols: RAX3, MYB84, ATMYB84 | myb domain protein 84 | chr3:18427941-18429100 FORWARD LENGTH=310;; (*ITAG) Solyc02g091980.1.1 (e_value=1e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47768960-47770244 transcript_region:SL2.40ch02:47768960..47770244+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00016877g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|176; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-77) hypothetical protein [Nicotiana tabacum]; NbS00000150g0008.1 protein AED:0.10 eAED:0.13 QI:0|0|0|1|1|1|2|0|979; (*GB) gi|255562713|ref|XP_002522362.1| (e_value=0.0) molybdopterin cofactor sulfurase, putative [Ricinus communis];; (*SWP) sp|Q8LGM7|MOCOS_SOLLC (e_value=1e-16) Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1;; (*TAIR) AT2G23520.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:10014256-10016943 REVERSE LENGTH=895;; (*ITAG) Solyc02g090190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46390971-46393760 transcript_region:SL2.40ch02:46390971..46393760- go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 *-*- C9SRE5_VERA1); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00000150g0011.1 protein AED:0.43 eAED:0.47 QI:81|0|0.5|1|1|1|2|46|71 NbS00000150g0018.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.66|1|0.87|0.77|9|0|1015; (*GB) gi|359480423|ref|XP_003632458.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248291 [Vitis vinifera];; (*SWP) sp|O04279|GPA2_PEA (e_value=6e-43) Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1;; (*TAIR) AT2G23460.1 (e_value=0.0) | Symbols: XLG1, ATXLG1 | extra-large G-protein 1 | chr2:9995699-9998945 FORWARD LENGTH=888;; (*ITAG) Solyc02g090160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46372679-46379249 transcript_region:SL2.40ch02:46372679..46379249+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00000150g0016.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.90|1|0.9|0.81|11|97|786; (*GB) gi|255562711|ref|XP_002522361.1| (e_value=0.0) oligopeptidase B, putative [Ricinus communis];; (*SWP) sp|Q59536|PTRB_MORLA (e_value=4e-55) Protease 2 OS=Moraxella lacunata GN=ptrB PE=3 SV=1;; (*TAIR) AT5G66960.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr5:26736209-26739493 REVERSE LENGTH=792;; (*ITAG) Solyc02g090180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46383042-46388070 transcript_region:SL2.40ch02:46383042..46388070+ go_terms:GO:0006508 functional_description:"Oligopeptidase (Protease II) (AHRD V1 **-- A6EDE8_9SPHI); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0006508 NbS00000150g0013.1 protein AED:0.20 eAED:0.26 QI:0|0.5|0.4|1|0.5|0.6|5|126|388; (*GB) gi|224137330|ref|XP_002327099.1| (e_value=7e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RYD1|REM16_ARATH (e_value=9e-31) B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1;; (*TAIR) AT4G33280.1 (e_value=7e-32) | Symbols: | AP2/B3-like transcriptional factor family protein | chr4:16047357-16049310 REVERSE LENGTH=337;; (*ITAG) Solyc02g090170.2.1 (e_value=1e-154) genomic_reference:SL2.40ch02 gene_region:46379891-46381662 transcript_region:SL2.40ch02:46379891..46381662+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40090 (AHRD V1 ***- Y1209_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00008052g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.44|0.5|0.9|1|1|10|432|309; (*GB) gi|45433313|emb|CAD27460.1| (e_value=2e-127) nucleosome assembly protein 1-like protein 1 [Nicotiana tabacum];; (*SWP) sp|P28656|NP1L1_MOUSE (e_value=4e-36) Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2;; (*TAIR) AT2G19480.3 (e_value=3e-96) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc12g008940.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00008052g0009.1 protein AED:0.28 eAED:0.28 QI:324|1|0.85|1|0.83|1|7|299|187; (*GB) gi|255546115|ref|XP_002514117.1| (e_value=5e-102) Density-regulated protein, putative [Ricinus communis];; (*SWP) sp|O42929|DENR_SCHPO (e_value=1e-36) Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=2 SV=1;; (*TAIR) AT5G11900.1 (e_value=7e-97) | Symbols: | Translation initiation factor SUI1 family protein | chr5:3834154-3836023 FORWARD LENGTH=198;; (*ITAG) Solyc12g008910.1.1 (e_value=5e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2227329-2231903 transcript_region:SL2.40ch12:2227329..2231903+ go_terms:GO:0006413 functional_description:"Density-regulated protein (AHRD V1 ***- B6SQI8_MAIZE); contains Interpro domain(s) IPR005873 Density-regulated protein DRP1 "; GO:0006413 NbS00048880g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|177 NbS00058387g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|6|0|317; (*GB) gi|359497656|ref|XP_002263924.2| (e_value=3e-158) PREDICTED: ALA-interacting subunit 1, partial [Vitis vinifera];; (*SWP) sp|Q8L8W0|ALIS5_ARATH (e_value=2e-151) ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1;; (*TAIR) AT1G79450.1 (e_value=2e-152) | Symbols: ALIS5 | ALA-interacting subunit 5 | chr1:29887831-29889904 FORWARD LENGTH=350;; (*ITAG) Solyc02g036440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21472999-21476904 transcript_region:SL2.40ch02:21472999..21476904- go_terms:GO:0005515,GO:0004970 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515,GO:0004970 NbC25054247g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|224093188|ref|XP_002309825.1| (e_value=3e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|B9DFG5|PTI13_ARATH (e_value=9e-61) PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana GN=PTI13 PE=1 SV=1;; (*TAIR) AT3G59350.2 (e_value=2e-62) | Symbols: | Protein kinase superfamily protein | chr3:21933392-21934883 FORWARD LENGTH=366;; (*ITAG) Solyc12g098820.1.1 (e_value=8e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64535368-64540452 transcript_region:SL2.40ch12:64535368..64540452+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021544g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0|0.25|4|0|459; (*GB) gi|209954721|dbj|BAG80551.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=3e-168) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=2e-169) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc11g006100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:887242-888751 transcript_region:SL2.40ch11:887242..888751+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- A9X3L6_9ASTR); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00021544g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|766; (*GB) gi|350535767|ref|NP_001234212.1| (e_value=0.0) ethylene receptor homolog precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZTP3|EIN4_ARATH (e_value=0.0) Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1;; (*TAIR) AT3G04580.2 (e_value=0.0) | Symbols: EIN4 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr3:1235576-1237965 REVERSE LENGTH=766;; (*ITAG) Solyc11g006180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:924556-929718 transcript_region:SL2.40ch11:924556..929718- go_terms:GO:0016020,GO:0005789,GO:0005524,GO:0006355,GO:0007165,GO:0018106 functional_description:"Ethylene receptor (AHRD V1 ***- C0ILN8_COFCA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor IPR005467 Signal transduction histidine kinase, core "; GO:0016020,GO:0005789,GO:0005524,GO:0006355,GO:0007165,GO:0018106 NbS00014634g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.8|0.9|1|1|10|0|456; (*GB) gi|359475312|ref|XP_003631649.1| (e_value=0.0) PREDICTED: adenylyl cyclase-associated protein 1-like [Vitis vinifera];; (*SWP) sp|P54654|CAP_DICDI (e_value=1e-76) Adenylyl cyclase-associated protein OS=Dictyostelium discoideum GN=cap PE=1 SV=1;; (*TAIR) AT4G34490.1 (e_value=0.0) | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated protein 1 | chr4:16484896-16487355 REVERSE LENGTH=476;; (*ITAG) Solyc01g109580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88245642-88249506 transcript_region:SL2.40ch01:88245642..88249506- go_terms:GO:0003785 functional_description:"Adenylyl cyclase-associated protein (AHRD V1 ***- B9H0Q2_POPTR); contains Interpro domain(s) IPR001837 Adenylate cyclase-associated CAP "; GO:0003785 NbC25776848g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|1|1|-1|1|1|35|370; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=1e-104) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR5|DRL21_ARATH (e_value=6e-14) Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1;; (*TAIR) AT3G14460.1 (e_value=5e-15) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc11g069660.1.1 (e_value=7e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51371454-51374081 transcript_region:SL2.40ch11:51371454..51374081- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006915 NbS00060552g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0.5|2|0|278; (*GB) gi|381148024|gb|AFF60302.1| (e_value=4e-138) xyloglucanase-specific endoglucanase inhibitor [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=4e-34) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=6e-56) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079920.2.1 (e_value=2e-131) genomic_reference:SL2.40ch01 gene_region:71589234-71592343 transcript_region:SL2.40ch01:71589234..71592343- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00032369g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.42|0.85|0.33|0.42|7|0|500; (*GB) gi|225423931|ref|XP_002278994.1| (e_value=2e-176) PREDICTED: aluminum-activated malate transporter 9 [Vitis vinifera];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=8e-134) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=6e-135) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc05g009580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3773293-3777228 transcript_region:SL2.40ch05:3773293..3777228+ go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00012467g0106.1 protein AED:0.31 eAED:0.31 QI:234|1|1|1|1|1|2|324|285 NbS00012467g0208.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|224 NbS00012467g0211.1 protein AED:0.35 eAED:0.54 QI:0|0|0|0.75|1|1|4|0|140 NbS00012467g0206.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.2|1|1|5|0|158 NbS00005428g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.8|1|0.88|0.8|10|318|443; (*GB) gi|359490595|ref|XP_002274287.2| (e_value=3e-115) PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=2e-74) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT5G24060.2 (e_value=6e-77) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:8130273-8133269 REVERSE LENGTH=494;; (*ITAG) Solyc03g007590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2133379-2141839 transcript_region:SL2.40ch03:2133379..2141839- functional_description:"Unknown Protein (AHRD V1)"; NbS00005428g0009.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|219; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-57) hypothetical protein [Nicotiana tabacum]; NbS00005428g0015.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.4|0.8|1|1|5|0|309; (*GB) gi|225464623|ref|XP_002274318.1| (e_value=3e-129) PREDICTED: pentatricopeptide repeat-containing protein At4g21190 [Vitis vinifera];; (*SWP) sp|Q8LG95|PP332_ARATH (e_value=3e-114) Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1;; (*TAIR) AT4G21190.1 (e_value=2e-115) | Symbols: emb1417 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11292493-11293763 REVERSE LENGTH=307;; (*ITAG) Solyc03g007600.2.1 (e_value=2e-170) genomic_reference:SL2.40ch03 gene_region:2142814-2146247 transcript_region:SL2.40ch03:2142814..2146247+ functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 ***- PP332_ARATH); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005428g0014.1 protein AED:0.32 eAED:0.33 QI:0|0.87|0.77|1|0.87|0.88|9|0|471; (*GB) gi|255545150|ref|XP_002513636.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62650.1 (e_value=0.0) | Symbols: | Tic22-like family protein | chr5:25152873-25155872 REVERSE LENGTH=529;; (*ITAG) Solyc03g007620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2159739-2168471 transcript_region:SL2.40ch03:2159739..2168471+ functional_description:"Os01g0225300 protein (Fragment) (AHRD V1 *-*- Q0JPF5_ORYSJ)"; NbS00031818g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|86; (*GB) gi|42568492|ref|NP_200091.2| (e_value=2e-31) CBS domain-containing protein with a domain of unknown function (DUF21) [Arabidopsis thaliana];; (*SWP) sp|Q9LTD8|Y5279_ARATH (e_value=6e-33) DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2;; (*TAIR) AT5G52790.1 (e_value=4e-34) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr5:21391740-21394327 REVERSE LENGTH=500;; (*ITAG) Solyc01g106570.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:86153651-86159586 transcript_region:SL2.40ch01:86153651..86159586- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_BUCAP); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00003906g0003.1 protein AED:0.31 eAED:0.31 QI:0|0.95|0.92|1|0.95|0.96|25|0|904; (*GB) gi|255538520|ref|XP_002510325.1| (e_value=0.0) exocyst complex component sec3, putative [Ricinus communis];; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=0.0) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.1 (e_value=0.0) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=887;; (*ITAG) Solyc12g088990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62594071-62609745 transcript_region:SL2.40ch12:62594071..62609745- functional_description:"Exocyst complex component 1 (AHRD V1 ***- Q5PPR2_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00035865g0001.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|277; (*GB) gi|147769814|emb|CAN76779.1| (e_value=2e-30) hypothetical protein VITISV_032081 [Vitis vinifera];; (*ITAG) Solyc02g092720.1.1 (e_value=3e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:48289282-48290199 transcript_region:SL2.40ch02:48289282..48290199+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055279g0004.1 protein AED:0.36 eAED:0.36 QI:74|0.81|0.83|1|0.45|0.33|12|345|378; (*GB) gi|225442892|ref|XP_002263706.1| (e_value=3e-176) PREDICTED: haloalkane dehalogenase [Vitis vinifera];; (*TAIR) AT1G52510.1 (e_value=4e-169) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:19563039-19565260 REVERSE LENGTH=380;; (*ITAG) Solyc06g068220.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38650988-38657598 transcript_region:SL2.40ch06:38650988..38657598+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KJH6_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbC25108803g0002.1 protein AED:0.03 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|356556416|ref|XP_003546522.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100817225 [Glycine max];; (*TAIR) AT5G20790.1 (e_value=1e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7040046-7040627 REVERSE LENGTH=193; NbS00032367g0012.1 protein AED:0.25 eAED:0.37 QI:1|0|0|1|0|0.2|5|0|268; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-67) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00032367g0013.1 protein AED:0.03 eAED:0.53 QI:0|0.33|0.25|1|0|0|4|0|796; (*GB) gi|359489486|ref|XP_002269573.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Vitis vinifera];; (*SWP) sp|Q9ZUW3|PP172_ARATH (e_value=3e-176) Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1;; (*TAIR) AT3G61170.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=783;; (*ITAG) Solyc01g091610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00032367g0008.1 protein AED:0.17 eAED:0.17 QI:228|1|1|1|0.85|0.73|15|522|465; (*GB) gi|1617200|emb|CAA69899.1| (e_value=0.0) NSK6 [Nicotiana tabacum];; (*SWP) sp|Q96287|KSG8_ARATH (e_value=0.0) Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3;; (*TAIR) AT4G00720.1 (e_value=0.0) | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like protein kinase 32 | chr4:294116-297002 REVERSE LENGTH=472;; (*ITAG) Solyc01g091620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76958019-76962224 transcript_region:SL2.40ch01:76958019..76962224- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00032367g0011.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|0|0|4|0|146; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g022560.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:14549282-14550273 transcript_region:SL2.40ch11:14549282..14550273+ go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 **-- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00014413g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|225460971|ref|XP_002280065.1| (e_value=1e-67) PREDICTED: protein translation factor SUI1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|P56330|SUI1_MAIZE (e_value=6e-59) Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1;; (*TAIR) AT5G54940.2 (e_value=4e-65) | Symbols: | Translation initiation factor SUI1 family protein | chr5:22308420-22308758 REVERSE LENGTH=112;; (*ITAG) Solyc07g064620.1.1 (e_value=5e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63909140-63909478 transcript_region:SL2.40ch07:63909140..63909478- go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00014091g0005.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|296082490|emb|CBI21495.3| (e_value=2e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G07900.1 (e_value=8e-13) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc04g072550.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00014091g0001.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|242092498|ref|XP_002436739.1| (e_value=1e-29) hypothetical protein SORBIDRAFT_10g007930 [Sorghum bicolor];; (*TAIR) AT1G21150.1 (e_value=3e-22) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc12g010650.1.1 (e_value=2e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00014091g0018.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|0|0|4|0|372; (*GB) gi|225438585|ref|XP_002276330.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100268158 [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=2e-16) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc12g010650.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00028117g0005.1 protein AED:0.34 eAED:0.34 QI:1|0.87|0.77|1|0.75|0.77|9|467|402; (*GB) gi|225464803|ref|XP_002268503.1| (e_value=4e-105) PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Vitis vinifera];; (*SWP) sp|Q9LIE5|FHY3_ARATH (e_value=5e-87) Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1;; (*TAIR) AT3G22170.2 (e_value=4e-88) | Symbols: FHY3 | far-red elongated hypocotyls 3 | chr3:7822359-7825414 REVERSE LENGTH=839;; (*ITAG) Solyc07g043270.2.1 (e_value=2e-130) genomic_reference:SL2.40ch07 gene_region:54255106-54265427 transcript_region:SL2.40ch07:54255106..54265427- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00006661g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.77|0.6|1|0.66|0.8|10|467|299; (*GB) gi|255550201|ref|XP_002516151.1| (e_value=2e-133) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26310.1 (e_value=9e-105) | Symbols: | Chalcone-flavanone isomerase family protein | chr2:11201770-11203919 FORWARD LENGTH=398;; (*ITAG) Solyc08g061480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45975801-45982039 transcript_region:SL2.40ch08:45975801..45982039+ go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 *-*- B6TFR7_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00019566g0010.1 protein AED:0.19 eAED:0.20 QI:0|1|0.66|1|1|1|3|236|549; (*GB) gi|297738198|emb|CBI27399.3| (e_value=1e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G03810.4 (e_value=2e-22) | Symbols: | 18S pre-ribosomal assembly protein gar2-related | chr2:1162703-1164286 FORWARD LENGTH=439;; (*ITAG) Solyc04g005290.2.1 (e_value=1e-177) genomic_reference:SL2.40ch04 gene_region:212945-215410 transcript_region:SL2.40ch04:212945..215410- functional_description:"Unknown Protein (AHRD V1)"; NbS00019566g0007.1 protein AED:0.35 eAED:0.35 QI:280|1|1|1|0.85|0.75|8|432|329; (*GB) gi|359473634|ref|XP_002266685.2| (e_value=3e-124) PREDICTED: transcription factor BIM2-like [Vitis vinifera];; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=3e-92) Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1;; (*TAIR) AT1G69010.1 (e_value=2e-93) | Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311;; (*ITAG) Solyc04g005280.2.1 (e_value=5e-180) genomic_reference:SL2.40ch04 gene_region:205332-212148 transcript_region:SL2.40ch04:205332..212148+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00020683g0003.1 protein AED:0.00 eAED:0.00 QI:202|1|1|1|0|0|2|213|144; (*GB) gi|225430167|ref|XP_002284793.1| (e_value=3e-34) PREDICTED: uncharacterized protein LOC100261242 [Vitis vinifera];; (*TAIR) AT2G25625.2 (e_value=2e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10906562-10907099 FORWARD LENGTH=151;; (*ITAG) Solyc08g067630.2.1 (e_value=7e-71) genomic_reference:SL2.40ch08 gene_region:53851854-53852776 transcript_region:SL2.40ch08:53851854..53852776+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008603g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.44|0.5|0.9|0.88|0.9|10|0|397; (*GB) gi|225447195|ref|XP_002277197.1| (e_value=7e-133) PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8L3X9|KASM_ARATH (e_value=2e-115) 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1;; (*TAIR) AT2G04540.1 (e_value=2e-116) | Symbols: | Beta-ketoacyl synthase | chr2:1581521-1584635 REVERSE LENGTH=461;; (*ITAG) Solyc07g049570.2.1 (e_value=1e-150) genomic_reference:SL2.40ch07 gene_region:57229419-57239024 transcript_region:SL2.40ch07:57229419..57239024+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase (AHRD V1 **** Q2W5G3_MAGSA); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00054725g0002.1 protein AED:0.07 eAED:0.07 QI:125|1|1|1|0|0|2|99|153; (*GB) gi|225431760|ref|XP_002270507.1| (e_value=1e-25) PREDICTED: uncharacterized protein LOC100261891 [Vitis vinifera];; (*TAIR) AT5G49120.1 (e_value=1e-18) | Symbols: | Protein of unknown function (DUF581) | chr5:19908800-19909332 REVERSE LENGTH=150;; (*ITAG) Solyc01g066570.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:67036797-67037827 transcript_region:SL2.40ch01:67036797..67037827+ functional_description:"Genomic DNA chromosome 5 TAC clone K14A3 (AHRD V1 *--- Q9FGQ9_ARATH); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00023520g0005.1 protein AED:0.01 eAED:0.01 QI:159|1|1|1|1|1|2|370|259; (*GB) gi|37572447|dbj|BAC98493.1| (e_value=4e-125) AG-motif binding protein-3 [Nicotiana tabacum];; (*SWP) sp|O49743|GATA4_ARATH (e_value=2e-59) GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1;; (*TAIR) AT3G60530.1 (e_value=1e-60) | Symbols: GATA4 | GATA transcription factor 4 | chr3:22373348-22374147 FORWARD LENGTH=240;; (*ITAG) Solyc01g090760.2.1 (e_value=2e-112) genomic_reference:SL2.40ch01 gene_region:76179808-76180978 transcript_region:SL2.40ch01:76179808..76180978+ go_terms:GO:0031013,GO:0030674 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0031013,GO:0030674 NbS00023520g0008.1 protein AED:0.00 eAED:0.00 QI:342|1|1|1|0.87|0.88|9|542|276; (*GB) gi|255541158|ref|XP_002511643.1| (e_value=2e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45060.1 (e_value=1e-90) | Symbols: | Uncharacterised conserved protein UCP022280 | chr2:18584674-18586688 REVERSE LENGTH=272;; (*ITAG) Solyc01g090770.2.1 (e_value=5e-146) genomic_reference:SL2.40ch01 gene_region:76182282-76188354 transcript_region:SL2.40ch01:76182282..76188354- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016803 Uncharacterised conserved protein UCP022280 "; NbS00015174g0003.1 protein AED:0.05 eAED:0.05 QI:209|1|1|1|1|1|2|239|431; (*GB) gi|225433483|ref|XP_002264429.1| (e_value=7e-180) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q9FI78|HCT_ARATH (e_value=1e-13) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Arabidopsis thaliana GN=HCT PE=2 SV=1;; (*TAIR) AT4G13840.1 (e_value=5e-105) | Symbols: | HXXXD-type acyl-transferase family protein | chr4:8014088-8016326 REVERSE LENGTH=428;; (*ITAG) Solyc09g092270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66753282-66757155 transcript_region:SL2.40ch09:66753282..66757155- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (AHRD V1 *--* D1GJ93_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00008198g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|467; (*GB) gi|359480611|ref|XP_003632499.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera];; (*TAIR) AT3G49880.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc02g092360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48028336-48032058 transcript_region:SL2.40ch02:48028336..48032058+ go_terms:GO:0005975,GO:0004867 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975,GO:0004867 NbS00016110g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.33|3|0|242; (*GB) gi|116337|sp|P29061.1|CHIB_TOBAC (e_value=2e-133) RecName: Full=Basic endochitinase; Flags: Precursor;; (*SWP) sp|P29061|CHIB_TOBAC (e_value=5e-135) Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G24090.1 (e_value=8e-74) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc05g050130.2.1 (e_value=1e-85) genomic_reference:SL2.40ch05 gene_region:59255269-59257111 transcript_region:SL2.40ch05:59255269..59257111- go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00016110g0001.1 protein AED:0.20 eAED:0.20 QI:481|0|0.5|1|0|0.5|2|0|114; (*GB) gi|255541746|ref|XP_002511937.1| (e_value=1e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G46220.1 (e_value=2e-37) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr2:18979655-18980557 FORWARD LENGTH=241;; (*ITAG) Solyc01g095270.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:78352723-78355979 transcript_region:SL2.40ch01:78352723..78355979+ functional_description:"SOUL heme-binding protein-like (AHRD V1 *-*- D7G9H5_ECTSI); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00050710g0003.1 protein AED:0.07 eAED:0.07 QI:135|1|1|1|1|1|13|354|469; (*GB) gi|359488915|ref|XP_002278099.2| (e_value=0.0) PREDICTED: protease Do-like 8, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LU10|DEGP8_ARATH (e_value=0.0) Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1;; (*TAIR) AT5G39830.1 (e_value=0.0) | Symbols: DEGP8, DEG8 | Trypsin family protein with PDZ domain | chr5:15942883-15945676 FORWARD LENGTH=448;; (*ITAG) Solyc02g067360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32135710-32140751 transcript_region:SL2.40ch02:32135710..32140751- go_terms:GO:0004252 functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** Q7UQ70_RHOBA); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "; GO:0004252 NbS00038646g0003.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0|0.66|1|1|3|0|297; (*GB) gi|18423435|ref|NP_568777.1| (e_value=4e-28) WRKY DNA-binding protein 27 [Arabidopsis thaliana];; (*SWP) sp|Q9FLX8|WRK27_ARATH (e_value=1e-29) Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1;; (*TAIR) AT5G52830.1 (e_value=1e-30) | Symbols: WRKY27, ATWRKY27 | WRKY DNA-binding protein 27 | chr5:21410996-21412218 FORWARD LENGTH=348;; (*ITAG) Solyc05g050060.1.1 (e_value=6e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59189414-59190607 transcript_region:SL2.40ch05:59189414..59190607- go_terms:GO:0045449 functional_description:"WRKY transcription factor 22 (AHRD V1 *-*- C5H9Z0_BRANA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00003801g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0.71|1|0.66|0.85|7|0|651; (*GB) gi|350535122|ref|NP_001234433.1| (e_value=0.0) carotenoid cleavage dioxygenase 7 [Solanum lycopersicum];; (*SWP) sp|Q7XJM2|CCD7_ARATH (e_value=0.0) Carotenoid cleavage dioxygenase 7, chloroplastic OS=Arabidopsis thaliana GN=CCD7 PE=1 SV=1;; (*TAIR) AT2G44990.1 (e_value=0.0) | Symbols: CCD7, MAX3, ATCCD7 | carotenoid cleavage dioxygenase 7 | chr2:18558938-18561621 FORWARD LENGTH=629;; (*ITAG) Solyc01g090660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76068751-76072476 transcript_region:SL2.40ch01:76068751..76072476+ go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase 7"; GO:0045549 NbS00003801g0015.1 protein AED:0.29 eAED:0.31 QI:0|0.85|0.62|1|1|1|8|0|701; (*GB) gi|255541132|ref|XP_002511630.1| (e_value=1e-73) structural constituent of nuclear pore, putative [Ricinus communis];; (*TAIR) AT2G45000.1 (e_value=2e-71) | Symbols: EMB2766 | structural constituent of nuclear pore | chr2:18564156-18567632 FORWARD LENGTH=739;; (*ITAG) Solyc01g090670.2.1 (e_value=2e-83) genomic_reference:SL2.40ch01 gene_region:76076259-76086586 transcript_region:SL2.40ch01:76076259..76086586+ go_terms:GO:0005643 functional_description:"Nuclear pore glycoprotein p62 (AHRD V1 *--- C0HBQ2_SALSA); contains Interpro domain(s) IPR007758 Nucleoporin, Nsp1-like, C-terminal "; GO:0005643 NbS00003801g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|527 NbS00003801g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.5|1|0.66|0.75|4|836|243; (*GB) gi|224136296|ref|XP_002326826.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25170.1 (e_value=3e-17) | Symbols: | Uncharacterised conserved protein (UCP012943) | chr4:12909740-12911389 FORWARD LENGTH=344;; (*ITAG) Solyc01g090680.2.1 (e_value=5e-70) genomic_reference:SL2.40ch01 gene_region:76086753-76088289 transcript_region:SL2.40ch01:76086753..76088289- functional_description:"Genomic DNA chromosome 5 TAC clone K11J9 (AHRD V1 *-*- Q9FKH0_ARATH)"; NbS00020604g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|201; (*GB) gi|332322086|emb|CCA65978.1| (e_value=7e-14) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g032700.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00045345g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|0.5|0|0.5|2|208|172; (*GB) gi|224139380|ref|XP_002323084.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43180.1 (e_value=2e-24) | Symbols: | Protein of unknown function, DUF599 | chr5:17336425-17337816 REVERSE LENGTH=239;; (*ITAG) Solyc10g074950.1.1 (e_value=4e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57995830-57997223 transcript_region:SL2.40ch10:57995830..57997223- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00045345g0005.1 protein AED:0.19 eAED:0.19 QI:120|0.75|0.6|1|1|1|5|205|526; (*GB) gi|225448713|ref|XP_002280844.1| (e_value=0.0) PREDICTED: transmembrane protein 87B [Vitis vinifera];; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=6e-39) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT1G61670.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr1:22770132-22772258 FORWARD LENGTH=513;; (*ITAG) Solyc10g074970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58005213-58008285 transcript_region:SL2.40ch10:58005213..58008285+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00009823g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|225425045|ref|XP_002270731.1| (e_value=1e-101) PREDICTED: uncharacterized protein LOC100256430 [Vitis vinifera];; (*TAIR) AT3G25545.1 (e_value=2e-87) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9277637-9278440 FORWARD LENGTH=267;; (*ITAG) Solyc05g010290.1.1 (e_value=5e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4453322-4454134 transcript_region:SL2.40ch05:4453322..4454134+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VYF2_POPTN)"; NbS00009823g0007.1 protein AED:0.30 eAED:0.30 QI:232|0.83|0.85|1|0.5|0.28|7|436|312; (*GB) gi|350535985|ref|NP_001233968.1| (e_value=0.0) ASC1-like protein [Solanum lycopersicum];; (*SWP) sp|Q8W4Y5|ASCL_SOLLC (e_value=0.0) ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G13580.3 (e_value=4e-159) | Symbols: LAG13 | LAG1 longevity assurance homolog 3 | chr1:4645006-4646765 REVERSE LENGTH=308;; (*ITAG) Solyc05g010280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4442298-4449047 transcript_region:SL2.40ch05:4442298..4449047+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 6 (AHRD V1 **-- C1C120_9MAXI); contains Interpro domain(s) IPR016439 Longevity assurance, LAG1/LAC1 "; GO:0050291 NbS00009823g0104.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|149 NbS00009823g0111.1 protein AED:0.26 eAED:0.26 QI:96|1|0.5|1|1|1|2|0|302 NbS00009823g0110.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|579 NbS00009823g0103.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|197 NbS00009823g0116.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.76|1|0.75|0.76|13|529|497 NbS00021312g0001.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|360|74; (*ITAG) Solyc12g039050.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00021312g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|4|0|227; (*ITAG) Solyc08g044370.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00023518g0001.1 protein AED:0.53 eAED:0.58 QI:0|0.5|0|0.66|1|1|3|0|122; (*GB) gi|224061497|ref|XP_002300509.1| (e_value=9e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G64720.1 (e_value=6e-31) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc03g081320.2.1 (e_value=6e-35) genomic_reference:SL2.40ch03 gene_region:45738953-45742666 transcript_region:SL2.40ch03:45738953..45742666+ functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00023518g0004.1 protein AED:0.23 eAED:0.57 QI:0|0|0|1|1|1|2|0|108; (*GB) gi|12003400|gb|AAG43557.1|AF211539_1 (e_value=5e-30) Avr9/Cf-9 rapidly elicited protein 65 [Nicotiana tabacum];; (*ITAG) Solyc03g081330.1.1 (e_value=2e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45743175-45743453 transcript_region:SL2.40ch03:45743175..45743453- functional_description:"Avr9/Cf-9 rapidly elicited protein 65 (AHRD V1 ***- Q9FQZ0_TOBAC)"; NbS00023518g0006.1 protein AED:0.40 eAED:0.52 QI:0|0|0|1|0|0|2|0|74; (*ITAG) Solyc03g081320.2.1 (e_value=4e-25) genomic_reference:SL2.40ch03 gene_region:45738953-45742666 transcript_region:SL2.40ch03:45738953..45742666+ functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00014558g0004.1 protein AED:0.37 eAED:0.40 QI:206|0.5|0.6|1|0|0|5|796|38 NbS00022300g0003.1 protein AED:0.17 eAED:0.20 QI:0|1|0.8|1|0.75|0.8|5|0|407; (*GB) gi|219921318|emb|CAQ51477.1| (e_value=1e-174) putative MATE transporter [Nicotiana tabacum];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=1e-127) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT2G04080.1 (e_value=1e-128) | Symbols: | MATE efflux family protein | chr2:1357327-1359159 REVERSE LENGTH=476;; (*ITAG) Solyc02g091080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47073657-47075912 transcript_region:SL2.40ch02:47073657..47075912- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_SHIF8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00022300g0004.1 protein AED:0.48 eAED:0.53 QI:0|0|0|1|0|0|2|0|95; (*GB) gi|224065226|ref|XP_002301726.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=3e-17) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT1G66780.1 (e_value=8e-25) | Symbols: | MATE efflux family protein | chr1:24909213-24911485 FORWARD LENGTH=485;; (*ITAG) Solyc02g091080.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47073657-47075912 transcript_region:SL2.40ch02:47073657..47075912- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_SHIF8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00030800g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|388515923|gb|AFK46023.1| (e_value=2e-24) unknown [Lotus japonicus];; (*TAIR) AT3G05570.1 (e_value=3e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1616265-1616636 REVERSE LENGTH=90;; (*ITAG) Solyc01g109680.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:88334992-88335716 transcript_region:SL2.40ch01:88334992..88335716- functional_description:"Unknown Protein (AHRD V1)"; NbS00013908g0004.1 protein AED:0.25 eAED:0.27 QI:240|0.53|0.56|1|0.8|0.75|16|217|1487; (*GB) gi|359477635|ref|XP_002274707.2| (e_value=8e-169) PREDICTED: probable inactive serine/threonine-protein kinase lvsG-like [Vitis vinifera];; (*SWP) sp|Q55FJ0|LVSG_DICDI (e_value=9e-37) Probable inactive serine/threonine-protein kinase lvsG OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1;; (*TAIR) AT5G18525.1 (e_value=9e-145) | Symbols: | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases | chr5:6146932-6153658 REVERSE LENGTH=1639;; (*ITAG) Solyc12g099010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64662179-64670542 transcript_region:SL2.40ch12:64662179..64670542- go_terms:GO:0006468 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A2EN39_TRIVA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0006468 NbS00027542g0002.1 protein AED:0.06 eAED:0.08 QI:0|0|0.33|1|0|0.33|3|1595|103 NbS00003427g0012.1 protein AED:0.12 eAED:0.10 QI:0|0.77|0.6|1|0.77|0.9|10|272|790; (*GB) gi|357521611|ref|XP_003631094.1| (e_value=1e-114) Golgin candidate [Medicago truncatula];; (*SWP) sp|B0F9L7|GOGC2_ARATH (e_value=8e-101) Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1;; (*TAIR) AT1G18190.1 (e_value=6e-102) | Symbols: GC2 | golgin candidate 2 | chr1:6257963-6261325 REVERSE LENGTH=668; NbS00003427g0011.1 protein AED:0.12 eAED:0.12 QI:155|1|1|1|1|1|2|162|225; (*GB) gi|224135525|ref|XP_002322095.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9U7|RAA6A_ARATH (e_value=4e-104) Ras-related protein RABA6a OS=Arabidopsis thaliana GN=RABA6A PE=2 SV=1;; (*TAIR) AT1G73640.1 (e_value=3e-105) | Symbols: AtRABA6a, RABA6a | RAB GTPase homolog A6A | chr1:27687033-27687987 FORWARD LENGTH=233;; (*ITAG) Solyc03g118820.2.1 (e_value=2e-144) genomic_reference:SL2.40ch03 gene_region:61679372-61682468 transcript_region:SL2.40ch03:61679372..61682468+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00003427g0013.1 protein AED:0.18 eAED:0.18 QI:117|1|0.9|1|0.66|0.9|10|208|289; (*GB) gi|359491022|ref|XP_003634205.1| (e_value=1e-165) PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera];; (*TAIR) AT1G73650.2 (e_value=9e-154) | Symbols: | Protein of unknown function (DUF1295) | chr1:27688549-27690165 REVERSE LENGTH=291;; (*ITAG) Solyc03g118830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61682845-61687726 transcript_region:SL2.40ch03:61682845..61687726- go_terms:GO:0016021 functional_description:"Conserved transmembrane protein (AHRD V1 **-- A0PNM5_MYCUA); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00003427g0118.1 protein AED:0.01 eAED:0.01 QI:0|1|0.25|1|1|1|4|0|404 NbS00003427g0121.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|0|0|2|0|700 NbS00003427g0120.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|1|1|4|308|408 NbS00003427g0104.1 protein AED:0.29 eAED:0.30 QI:21|0.66|0.6|1|1|1|10|0|485 NbS00003427g0223.1 protein AED:0.12 eAED:0.12 QI:0|1|0.71|1|1|1|7|0|364 NbS00003427g0224.1 protein AED:0.14 eAED:0.14 QI:175|1|1|1|0.94|0.9|20|1001|1180 NbS00003427g0201.1 protein AED:0.28 eAED:0.28 QI:0|0.87|0.88|1|0.62|0.55|9|736|215 NbS00003427g0231.1 protein AED:0.09 eAED:0.12 QI:0|0.33|0.25|1|0.66|0.75|4|0|462 NbS00003427g0234.1 protein AED:0.12 eAED:0.12 QI:0|0.57|0.62|1|0.14|0.62|8|248|434 NbS00003427g0203.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|538 NbS00003427g0216.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|71 NbS00003427g0226.1 protein AED:0.14 eAED:0.15 QI:12|0|0|1|0|0|3|0|669 NbS00006772g0008.1 protein AED:0.18 eAED:0.18 QI:265|0.83|0.57|1|0.33|0.42|7|0|225; (*GB) gi|225459779|ref|XP_002285907.1| (e_value=1e-63) PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Vitis vinifera];; (*SWP) sp|Q9BV90|SNR25_HUMAN (e_value=3e-24) U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens GN=SNRNP25 PE=1 SV=1;; (*TAIR) AT3G07860.1 (e_value=1e-51) | Symbols: | Ubiquitin-like superfamily protein | chr3:2507895-2508656 FORWARD LENGTH=165;; (*ITAG) Solyc11g008730.1.1 (e_value=4e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2905950-2911647 transcript_region:SL2.40ch11:2905950..2911647+ functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- B5XFG3_SALSA); contains Interpro domain(s) IPR019955 Ubiquitin supergroup "; NbS00006772g0005.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0|0|2|0|246; (*GB) gi|147841236|emb|CAN64512.1| (e_value=2e-140) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-104) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=5e-111) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=7e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00045370g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|57014007|ref|YP_173478.1| (e_value=3e-72) hypothetical protein NitaMp141 [Nicotiana tabacum];; (*ITAG) Solyc07g017930.1.1 (e_value=6e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00045370g0004.1 protein AED:0.35 eAED:0.48 QI:0|0.5|0|1|0|0|3|0|112 NbS00000460g0009.1 protein AED:0.36 eAED:0.36 QI:260|1|1|1|1|1|4|212|149; (*GB) gi|255544157|ref|XP_002513141.1| (e_value=9e-20) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G08535.1 (e_value=5e-15) | Symbols: | D111/G-patch domain-containing protein | chr5:2762455-2763320 FORWARD LENGTH=141; NbS00007783g0008.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.75|0.33|0.25|4|0|481; (*GB) gi|255547590|ref|XP_002514852.1| (e_value=5e-93) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=1e-57) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=8e-59) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g055750.2.1 (e_value=2e-153) genomic_reference:SL2.40ch05 gene_region:64410352-64413767 transcript_region:SL2.40ch05:64410352..64413767- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00007783g0007.1 protein AED:0.13 eAED:0.14 QI:296|0.83|0.85|1|0.5|0.42|7|259|254; (*GB) gi|13603408|dbj|BAB40974.1| (e_value=2e-167) isopentenyl diphosphate isomerase 2 [Nicotiana tabacum];; (*SWP) sp|O48965|IDI2_CAMAC (e_value=2e-159) Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1;; (*TAIR) AT5G16440.1 (e_value=3e-149) | Symbols: IPP1 | isopentenyl diphosphate isomerase 1 | chr5:5371765-5373575 FORWARD LENGTH=291;; (*ITAG) Solyc05g055760.2.1 (e_value=2e-163) genomic_reference:SL2.40ch05 gene_region:64415817-64419127 transcript_region:SL2.40ch05:64415817..64419127- go_terms:GO:0004452,GO:0042802 functional_description:"Isopentenyl-diphosphate delta-isomerase (AHRD V1 **** Q84RZ8_9GENT); contains Interpro domain(s) IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 "; GO:0004452,GO:0042802 NbS00012120g0002.1 protein AED:0.32 eAED:0.32 QI:352|1|0.85|1|0.5|0.57|7|854|127; (*GB) gi|18424791|ref|NP_568985.1| (e_value=2e-54) cAMP-regulated phosphoprotein 19-related protein [Arabidopsis thaliana];; (*TAIR) AT5G64130.1 (e_value=5e-57) | Symbols: | cAMP-regulated phosphoprotein 19-related protein | chr5:25664547-25665339 REVERSE LENGTH=115;; (*ITAG) Solyc01g095050.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:78179288-78180925 transcript_region:SL2.40ch01:78179288..78180925- functional_description:"Negatively light-regulated protein (AHRD V1 ***- B4FAY8_MAIZE); contains Interpro domain(s) IPR012482 Lg106-like "; NbS00012120g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|1|1|2|662|302; (*GB) gi|297745322|emb|CBI40402.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=4e-124) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G01500.1 (e_value=3e-125) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:185260-186573 FORWARD LENGTH=327;; (*ITAG) Solyc10g011980.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4272369-4276978 transcript_region:SL2.40ch10:4272369..4276978+ functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00007920g0002.1 protein AED:0.19 eAED:0.19 QI:940|0.71|0.75|1|1|1|8|203|686; (*GB) gi|225461467|ref|XP_002285008.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=7e-179) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc07g053910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59638570-59645162 transcript_region:SL2.40ch07:59638570..59645162- go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004621g0004.1 protein AED:0.09 eAED:0.09 QI:694|0.87|0.88|1|0.5|0.33|9|524|434; (*GB) gi|225452911|ref|XP_002278818.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=5e-147) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G18670.1 (e_value=3e-169) | Symbols: IBS1 | Protein kinase superfamily protein | chr1:6427242-6430696 REVERSE LENGTH=709;; (*ITAG) Solyc02g088330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45038385-45044855 transcript_region:SL2.40ch02:45038385..45044855- go_terms:GO:0016301 functional_description:"Cell division protein kinase 13 (AHRD V1 *-** CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00018197g0011.1 protein AED:0.23 eAED:0.24 QI:205|0.78|0.6|1|0.71|0.66|15|0|871; (*GB) gi|225439193|ref|XP_002269480.1| (e_value=0.0) PREDICTED: nucleolar MIF4G domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q5C9Z4|NOM1_HUMAN (e_value=1e-70) Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1;; (*TAIR) AT5G17930.1 (e_value=0.0) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:5940131-5943952 REVERSE LENGTH=784;; (*ITAG) Solyc03g097280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53040555-53058473 transcript_region:SL2.40ch03:53040555..53058473+ go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor CWC22 homolog (AHRD V1 *--- CWC22_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515 NbS00003824g0020.1 protein AED:0.08 eAED:0.08 QI:529|0.66|0.8|0.9|0.88|0.8|10|390|694; (*GB) gi|297733936|emb|CBI15183.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=4e-167) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G74330.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27943535-27947109 REVERSE LENGTH=690;; (*ITAG) Solyc02g088330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45038385-45044855 transcript_region:SL2.40ch02:45038385..45044855- go_terms:GO:0016301 functional_description:"Cell division protein kinase 13 (AHRD V1 *-** CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00003824g0015.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|0.8|1|6|0|370; (*GB) gi|209167729|gb|ACI41889.1| (e_value=1e-180) chorismate mutase 1 [Petunia x hybrida];; (*SWP) sp|P42738|CHMU_ARATH (e_value=1e-129) Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=3;; (*TAIR) AT3G29200.1 (e_value=9e-131) | Symbols: CM1, ATCM1 | chorismate mutase 1 | chr3:11164582-11166258 REVERSE LENGTH=340;; (*ITAG) Solyc02g088460.2.1 (e_value=2e-167) genomic_reference:SL2.40ch02 gene_region:45123129-45127345 transcript_region:SL2.40ch02:45123129..45127345- go_terms:GO:0004106,GO:0042803 functional_description:"Chorismate mutase 1 (AHRD V1 **** D2CSU4_PETHY); contains Interpro domain(s) IPR008238 Chorismate mutase of the AroQ class, eukaryotic type "; GO:0004106,GO:0042803 NbS00003824g0017.1 protein AED:0.18 eAED:0.18 QI:193|1|0.85|1|0.83|0.71|7|0|413; (*GB) gi|296082963|emb|CBI22264.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G29185.1 (e_value=1e-180) | Symbols: | Domain of unknown function (DUF3598) | chr3:11155092-11157207 REVERSE LENGTH=396;; (*ITAG) Solyc02g088350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45051124-45054896 transcript_region:SL2.40ch02:45051124..45054896- functional_description:"Genomic DNA chromosome 3 P1 clone MXO21 (AHRD V1 ***- Q9LS78_ARATH)"; NbS00003824g0024.1 protein AED:0.29 eAED:0.29 QI:134|1|0.8|1|0.5|0.6|5|0|468; (*GB) gi|14530683|dbj|BAB61054.1| (e_value=0.0) WRKY DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=3e-116) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=2e-117) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc02g088340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45045827-45048579 transcript_region:SL2.40ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00003824g0016.1 protein AED:0.40 eAED:0.41 QI:0|1|0.5|1|1|1|2|0|176; (*GB) gi|225452918|ref|XP_002284104.1| (e_value=4e-71) PREDICTED: lamin-like protein [Vitis vinifera];; (*SWP) sp|Q39131|LAML_ARATH (e_value=3e-50) Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1;; (*TAIR) AT5G15350.1 (e_value=3e-51) | Symbols: ENODL17, AtENODL17 | early nodulin-like protein 17 | chr5:4985184-4986154 REVERSE LENGTH=172;; (*ITAG) Solyc02g088390.2.1 (e_value=3e-103) genomic_reference:SL2.40ch02 gene_region:45062928-45065725 transcript_region:SL2.40ch02:45062928..45065725- go_terms:GO:0005515 functional_description:"Blue copper-like protein (AHRD V1 *--- B8Y8A0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00003824g0025.1 protein AED:0.44 eAED:0.45 QI:0|0|0|0.75|0|0|4|0|174; (*GB) gi|139538723|gb|ABO77952.1| (e_value=1e-80) transcription factor WRKY7, partial [Nicotiana attenuata];; (*SWP) sp|Q9ZQ70|WRKY3_ARATH (e_value=4e-26) Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1;; (*TAIR) AT2G03340.1 (e_value=3e-27) | Symbols: WRKY3 | WRKY DNA-binding protein 3 | chr2:1014724-1016936 REVERSE LENGTH=513;; (*ITAG) Solyc02g088340.2.1 (e_value=5e-64) genomic_reference:SL2.40ch02 gene_region:45045827-45048579 transcript_region:SL2.40ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00004311g0019.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0.5|2|0|534; (*GB) gi|113205415|gb|AAU90317.2| (e_value=0.0) TPR domain containing protein, putative [Solanum demissum];; (*TAIR) AT1G26760.1 (e_value=0.0) | Symbols: ATXR1, SDG35 | SET domain protein 35 | chr1:9248304-9249941 REVERSE LENGTH=545;; (*ITAG) Solyc05g007760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2222466-2224064 transcript_region:SL2.40ch05:2222466..2224064+ go_terms:GO:0005488 functional_description:"SET domain protein (AHRD V1 ***- B9HI95_POPTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00004311g0018.1 protein AED:0.09 eAED:0.09 QI:442|1|1|1|1|1|16|678|877; (*GB) gi|49533765|gb|AAT66764.1| (e_value=0.0) Putative anaphase promoting complex protein, identical [Solanum demissum];; (*SWP) sp|Q8H1U5|APC2_ARATH (e_value=0.0) Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1;; (*TAIR) AT2G04660.1 (e_value=0.0) | Symbols: APC2 | anaphase-promoting complex/cyclosome 2 | chr2:1624933-1629039 FORWARD LENGTH=865;; (*ITAG) Solyc05g007750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2213544-2221713 transcript_region:SL2.40ch05:2213544..2221713+ go_terms:GO:0004842 functional_description:"Anaphase promoting complex subunit 2 (AHRD V1 *-*- Q3U430_MOUSE); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00004311g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|0|0.5|2|566|705; (*GB) gi|49533766|gb|AAT66765.1| (e_value=0.0) Putative selenium-binding protein, related [Solanum demissum];; (*SWP) sp|Q680H3|PP170_ARATH (e_value=1e-156) Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2;; (*TAIR) AT2G25580.1 (e_value=8e-158) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:10888102-10889949 FORWARD LENGTH=615;; (*ITAG) Solyc05g007740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:2208642-2210825 transcript_region:SL2.40ch05:2208642..2210825+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00004311g0010.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|98978859|gb|ABF59864.1| (e_value=6e-23) ATP synthase alpha chain [Oryza sativa Japonica Group];; (*SWP) sp|Q27S65|ATPA_SOLTU (e_value=3e-23) ATP synthase subunit alpha, chloroplastic OS=Solanum tuberosum GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=8e-24) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbC25240390g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.2|0.8|0.75|0.8|5|0|119; (*GB) gi|297744438|emb|CBI37700.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64885|BCCIP_ARATH (e_value=1e-29) Protein BCCIP homolog OS=Arabidopsis thaliana GN=At2g44510 PE=1 SV=2;; (*TAIR) AT2G44510.1 (e_value=1e-30) | Symbols: | CDK inhibitor P21 binding protein | chr2:18377411-18379030 FORWARD LENGTH=326;; (*ITAG) Solyc04g007850.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:1518553-1521840 transcript_region:SL2.40ch04:1518553..1521840- functional_description:"BCCIP homolog (AHRD V1 **-- C1BJX3_OSMMO)"; NbS00028664g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|112; (*GB) gi|57013967|ref|YP_173439.1| (e_value=8e-36) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00028664g0009.1 protein AED:0.23 eAED:0.26 QI:87|0.55|0.6|1|0.33|0.4|10|0|287; (*GB) gi|224108267|ref|XP_002314781.1| (e_value=2e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GUU3|CPS3B_ARATH (e_value=5e-156) Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2;; (*TAIR) AT2G01730.1 (e_value=4e-157) | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and polyadenylation specificity factor 73 kDa subunit-II | chr2:320597-323845 FORWARD LENGTH=613;; (*ITAG) Solyc04g008030.1.1 (e_value=2e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1682464-1697247 transcript_region:SL2.40ch04:1682464..1697247- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B0WXD2_CULQU); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00028664g0008.1 protein AED:0.11 eAED:0.11 QI:344|0.9|0.90|1|0.7|0.72|11|468|626; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=0.0) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=0.0) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc04g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1700710-1706396 transcript_region:SL2.40ch04:1700710..1706396+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00029704g0003.1 protein AED:0.17 eAED:0.17 QI:141|0.5|0.63|1|0.9|0.81|11|260|512; (*GB) gi|224108635|ref|XP_002314917.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69040.2 (e_value=0.0) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25957843-25960079 FORWARD LENGTH=455;; (*ITAG) Solyc05g011920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5153637-5156871 transcript_region:SL2.40ch05:5153637..5156871+ go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00002760g0003.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|1|1|2|0|501; (*GB) gi|336169731|gb|AEI25530.1| (e_value=0.0) gibberellic acid insensitive protein [Solanum tuberosum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=0.0) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=4e-172) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00038863g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|589; (*GB) gi|350535701|ref|NP_001234464.1| (e_value=0.0) coronatine-insensitive 1 [Solanum lycopersicum];; (*SWP) sp|O04197|COI1_ARATH (e_value=0.0) Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1;; (*TAIR) AT2G39940.1 (e_value=0.0) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592;; (*ITAG) Solyc05g052620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61968471-61974545 transcript_region:SL2.40ch05:61968471..61974545- go_terms:GO:0005515,GO:0004842 functional_description:"Coronatine-insensitive 1 (Fragment) (AHRD V1 *--- Q5VJQ1_TOBAC)"; GO:0005515,GO:0004842 NbS00030761g0001.1 protein AED:0.86 eAED:0.94 QI:19|0|0|0.33|1|0.83|6|0|84; (*GB) gi|356549373|ref|XP_003543068.1| (e_value=6e-15) PREDICTED: tRNA-specific adenosine deaminase 2 [Glycine max];; (*TAIR) AT1G48175.1 (e_value=1e-14) | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase family protein | chr1:17790957-17792066 FORWARD LENGTH=182;; (*ITAG) Solyc07g008650.2.1 (e_value=2e-18) genomic_reference:SL2.40ch07 gene_region:3585311-3592520 transcript_region:SL2.40ch07:3585311..3592520+ go_terms:GO:0008251 functional_description:"tRNA-specific adenosine deaminase (AHRD V1 **** B6T9V4_MAIZE); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0008251 NbS00028586g0010.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.25|1|1|4|0|92; (*ITAG) Solyc00g019970.2.1 (e_value=2e-33) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028586g0012.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.5|1|1|2|0|82; (*SWP) sp|P80261|NDUS3_SOLTU (e_value=2e-14) NADH dehydrogenase [ubiquinone] iron-sulfur protein 3 OS=Solanum tuberosum GN=NAD9 PE=1 SV=3;; (*ITAG) ATMG00070.1 (e_value=2e-15) | Symbols: NAD9 | NADH dehydrogenase subunit 9 | chrM:23663-24235 REVERSE LENGTH=190;; (*ITAG) Solyc00g019950.1.1 (e_value=6e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:11799418-11799990 transcript_region:SL2.40ch00:11799418..11799990- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit C (AHRD V1 ***- NUOC_MAGSA); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00028586g0014.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|4|0|153; (*ITAG) Solyc00g069880.2.1 (e_value=3e-52) genomic_reference:SL2.40ch00 gene_region:14546579-14550015 transcript_region:SL2.40ch00:14546579..14550015+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028586g0018.1 protein AED:0.10 eAED:0.36 QI:0|0|0|1|0|0|2|0|127; (*ITAG) Solyc00g069880.2.1 (e_value=7e-27) genomic_reference:SL2.40ch00 gene_region:14546579-14550015 transcript_region:SL2.40ch00:14546579..14550015+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028586g0017.1 protein AED:0.38 eAED:0.63 QI:0|0|0|1|0|0|2|0|86; (*GB) gi|42539677|gb|AAS18745.1| (e_value=2e-22) cytochrome b-559 alpha subunit [Alstroemeria aurea];; (*SWP) sp|P69383|PSBE_SPIOL (e_value=5e-23) Cytochrome b559 subunit alpha OS=Spinacia oleracea GN=psbE PE=1 SV=2;; (*ITAG) ATCG00580.1 (e_value=1e-23) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83; NbS00028586g0016.1 protein AED:0.33 eAED:0.64 QI:0|0|0|1|0|0|2|0|79 NbS00029096g0011.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|0|0.33|3|0|161; (*GB) gi|225449066|ref|XP_002275108.1| (e_value=9e-20) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*TAIR) AT2G39220.1 (e_value=1e-19) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc07g008420.2.1 (e_value=3e-34) genomic_reference:SL2.40ch07 gene_region:3213591-3215016 transcript_region:SL2.40ch07:3213591..3215016- go_terms:GO:0005515 functional_description:"Blue copper-like protein (AHRD V1 **-- A3F8V0_GOSHI); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0005515 NbS00050066g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|225448888|ref|XP_002263930.1| (e_value=9e-76) PREDICTED: uncharacterized protein LOC100241098 [Vitis vinifera];; (*TAIR) AT5G04460.2 (e_value=2e-67) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263502 FORWARD LENGTH=825;; (*ITAG) Solyc11g007910.1.1 (e_value=4e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00013705g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.66|1|1|1|6|0|441; (*GB) gi|1706330|sp|P51846.1|PDC2_TOBAC (e_value=1e-180) RecName: Full=Pyruvate decarboxylase isozyme 2; Short=PDC;; (*SWP) sp|P51846|PDC2_TOBAC (e_value=0.0) Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1;; (*TAIR) AT4G33070.1 (e_value=2e-152) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr4:15952519-15954676 REVERSE LENGTH=607;; (*ITAG) Solyc06g082130.2.1 (e_value=9e-169) genomic_reference:SL2.40ch06 gene_region:44337242-44340219 transcript_region:SL2.40ch06:44337242..44340219+ go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase 2 (AHRD V1 **** Q5BN15_PETHY); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00013705g0010.1 protein AED:0.38 eAED:0.40 QI:20|0.28|0.37|0.5|0.71|0.75|8|529|114; (*GB) gi|225434528|ref|XP_002276394.1| (e_value=5e-47) PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Vitis vinifera];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=9e-45) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=7e-46) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=2e-49) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00013705g0008.1 protein AED:0.14 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|457|77 NbS00049626g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.66|0.88|0.75|0.88|9|0|518; (*GB) gi|45387415|gb|AAS60198.1| (e_value=0.0) hexokinase 6 [Nicotiana tabacum];; (*SWP) sp|Q9LPS1|HXK3_ARATH (e_value=0.0) Hexokinase-3 OS=Arabidopsis thaliana GN=At1g50460 PE=1 SV=1;; (*TAIR) AT1G50460.1 (e_value=0.0) | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:18694031-18697429 FORWARD LENGTH=498;; (*ITAG) Solyc11g065220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47666953-47671142 transcript_region:SL2.40ch11:47666953..47671142+ go_terms:GO:0006096,GO:0005975 functional_description:"Hexokinase 6 (AHRD V1 ***- Q6Q8A0_TOBAC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0006096,GO:0005975 NbS00032132g0014.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|0.75|0.66|0.5|4|0|1029; (*GB) gi|142942427|gb|ABO93001.1| (e_value=0.0) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=1e-61) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc04g007490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00032132g0016.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|0|0|2|0|177; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=2e-28) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=8e-23) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc04g007490.2.1 (e_value=3e-50) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00032132g0015.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|73 NbS00032132g0017.1 protein AED:0.36 eAED:1.00 QI:43|0|0|1|0|0|2|101|15 NbS00002051g0007.1 protein AED:0.36 eAED:0.55 QI:0|0|0|1|1|1|2|0|124; (*GB) gi|325953644|gb|ADZ46095.1| (e_value=2e-73) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Cardamine hirsuta];; (*SWP) sp|P28414|RBL_EUCLU (e_value=1e-72) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eucryphia lucida GN=rbcL PE=3 SV=2;; (*ITAG) ATCG00490.1 (e_value=2e-72) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=3e-72) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00002051g0012.1 protein AED:0.49 eAED:0.79 QI:46|0|0|1|0|0.5|2|71|21 NbS00002051g0010.1 protein AED:0.15 eAED:0.15 QI:243|0.83|0.84|1|0.5|0.53|13|414|468; (*GB) gi|506534|emb|CAA50374.1| (e_value=0.0) protein kinase [Nicotiana tabacum];; (*SWP) sp|Q2LZZ7|TRC_DROPS (e_value=2e-115) Serine/threonine-protein kinase tricorner OS=Drosophila pseudoobscura pseudoobscura GN=trc PE=3 SV=1;; (*TAIR) AT2G20470.1 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr2:8826277-8829497 REVERSE LENGTH=569;; (*ITAG) Solyc06g008330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:2204254-2211375 transcript_region:SL2.40ch06:2204254..2211375- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002051g0013.1 protein AED:0.18 eAED:0.18 QI:575|1|1|1|0.6|0.56|16|330|456; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=0.0) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc06g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2193612-2201004 transcript_region:SL2.40ch06:2193612..2201004- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00002051g0006.1 protein AED:0.32 eAED:0.32 QI:132|0.5|0.66|0.66|1|1|3|0|279; (*GB) gi|255577954|ref|XP_002529849.1| (e_value=2e-122) Adaptin ear-binding coat-associated protein, putative [Ricinus communis];; (*SWP) sp|Q681Q7|Y1390_ARATH (e_value=9e-105) Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1;; (*TAIR) AT1G03900.1 (e_value=7e-106) | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 | chr1:991252-992852 FORWARD LENGTH=272;; (*ITAG) Solyc06g008340.2.1 (e_value=2e-134) genomic_reference:SL2.40ch06 gene_region:2216005-2219508 transcript_region:SL2.40ch06:2216005..2219508- go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 2 (AHRD V1 **** B4FAZ6_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00014717g0010.1 protein AED:0.08 eAED:0.11 QI:0|0.38|0.07|1|1|1|14|0|1981; (*GB) gi|359495964|ref|XP_002267137.2| (e_value=8e-156) PREDICTED: uncharacterized protein LOC100266068 [Vitis vinifera];; (*TAIR) AT4G17330.1 (e_value=1e-85) | Symbols: ATG2484-1, G2484-1 | G2484-1 protein | chr4:9689263-9697172 REVERSE LENGTH=2037;; (*ITAG) Solyc08g078530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59475846-59489783 transcript_region:SL2.40ch08:59475846..59489783+ go_terms:GO:0003723 functional_description:"Agenet domain containing protein expressed (AHRD V1 *-*- Q108Y7_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00014717g0003.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|359495960|ref|XP_003635123.1| (e_value=3e-87) PREDICTED: metalloendoproteinase 1-like [Vitis vinifera];; (*SWP) sp|P29136|MEP1_SOYBN (e_value=8e-44) Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT2G45040.1 (e_value=2e-79) | Symbols: | Matrixin family protein | chr2:18577693-18578721 FORWARD LENGTH=342;; (*ITAG) Solyc08g078550.1.1 (e_value=3e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59511837-59512907 transcript_region:SL2.40ch08:59511837..59512907+ go_terms:GO:0004222 functional_description:"Matrix metalloproteinase (AHRD V1 **-- D7LBU9_ARALY); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin "; GO:0004222 NbS00014717g0020.1 protein AED:0.38 eAED:0.41 QI:14|0|0.5|1|0|0.5|2|95|72 NbS00014717g0017.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.66|1|0.87|0.77|9|0|577; (*GB) gi|359495962|ref|XP_002267185.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-88) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT4G16650.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr4:9372727-9375910 FORWARD LENGTH=549;; (*ITAG) Solyc08g078540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59490820-59499346 transcript_region:SL2.40ch08:59490820..59499346- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00018402g0003.1 protein AED:0.18 eAED:0.18 QI:325|1|1|1|1|1|10|306|498; (*GB) gi|225436397|ref|XP_002272121.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=5e-86) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G22850.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:7633717-7636298 REVERSE LENGTH=493;; (*ITAG) Solyc11g066620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49476659-49482053 transcript_region:SL2.40ch11:49476659..49482053+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M1J9_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00053883g0003.1 protein AED:0.25 eAED:0.26 QI:24|0.4|0|0.66|0.6|0.66|6|0|261; (*GB) gi|359475200|ref|XP_002282080.2| (e_value=1e-37) PREDICTED: B3 domain-containing protein At3g19184-like [Vitis vinifera];; (*SWP) sp|Q1G3M3|Y3918_ARATH (e_value=2e-36) B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=2e-37) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108120.2.1 (e_value=2e-129) genomic_reference:SL2.40ch01 gene_region:87238627-87242710 transcript_region:SL2.40ch01:87238627..87242710+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 *-*- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00006429g0001.1 protein AED:0.50 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|130; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-35) hypothetical protein [Nicotiana tabacum]; NbS00030756g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|3|0|585; (*GB) gi|142942427|gb|ABO93001.1| (e_value=1e-115) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=8e-101) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=4e-40) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007350.1.1 (e_value=3e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00030756g0003.1 protein AED:0.47 eAED:0.69 QI:0|0|0|1|1|1|2|0|110 NbS00030756g0011.1 protein AED:0.14 eAED:0.15 QI:0|0.8|0.75|1|1|1|16|312|640; (*GB) gi|307135835|gb|ADN33706.1| (e_value=0.0) dynamin [Cucumis melo subsp. melo];; (*SWP) sp|Q8LF21|DRP1C_ARATH (e_value=0.0) Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2;; (*TAIR) AT1G14830.1 (e_value=0.0) | Symbols: ADL1C, ADL5, DRP1C, DL1C | DYNAMIN-like 1C | chr1:5107699-5111470 REVERSE LENGTH=614;; (*ITAG) Solyc01g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:220580-225903 transcript_region:SL2.40ch01:220580..225903- go_terms:GO:0005525 functional_description:"Dynamin like protein (AHRD V1 ***- D3BTL7_POLPA); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00030756g0014.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|269; (*GB) gi|48057658|gb|AAT39957.1| (e_value=1e-12) Putative late blight resistance protein, identical [Solanum demissum];; (*ITAG) Solyc05g007630.2.1 (e_value=4e-17) genomic_reference:SL2.40ch05 gene_region:2145078-2149204 transcript_region:SL2.40ch05:2145078..2149204- go_terms:GO:0006952,GO:0045893,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0045893,GO:0006915 NbS00014299g0013.1 protein AED:0.25 eAED:0.27 QI:324|1|0.91|1|1|1|12|0|462; (*GB) gi|225440882|ref|XP_002276711.1| (e_value=8e-145) PREDICTED: uncharacterized protein At5g03900, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8GW20|Y5390_ARATH (e_value=4e-138) Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=1 SV=2;; (*TAIR) AT5G03900.2 (e_value=3e-139) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1048338-1051869 FORWARD LENGTH=523;; (*ITAG) Solyc04g049130.2.1 (e_value=3e-130) genomic_reference:SL2.40ch04 gene_region:38898121-38915942 transcript_region:SL2.40ch04:38898121..38915942+ functional_description:"At5g03900 (Fragment) (AHRD V1 *-*- B0LQ56_ARATH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; NbS00014299g0002.1 protein AED:0.14 eAED:0.14 QI:363|0.85|0.62|1|1|1|8|0|290; (*GB) gi|297740117|emb|CBI30299.3| (e_value=5e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82782|HIS4_ARATH (e_value=3e-148) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic OS=Arabidopsis thaliana GN=HIS6 PE=2 SV=1;; (*TAIR) AT2G36230.1 (e_value=2e-149) | Symbols: APG10, HISN3 | Aldolase-type TIM barrel family protein | chr2:15193878-15195509 REVERSE LENGTH=304;; (*ITAG) Solyc05g056150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64692116-64697473 transcript_region:SL2.40ch05:64692116..64697473- go_terms:GO:0003949 functional_description:"1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (AHRD V1 **** D7G369_ECTSI); contains Interpro domain(s) IPR011858 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic "; GO:0003949 NbS00022128g0003.1 protein AED:0.25 eAED:0.29 QI:10|0|0|1|0|0|5|0|291; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-36) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00022128g0004.1 protein AED:0.11 eAED:0.24 QI:0|0|0|1|0|0|3|0|97; (*GB) gi|78102595|ref|YP_358734.1| (e_value=1e-24) NADH dehydrogenase subunit 5 [Nicotiana sylvestris];; (*SWP) sp|P06265|NU5C_TOBAC (e_value=3e-26) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana tabacum GN=ndhF PE=3 SV=2;; (*ITAG) ATCG01010.1 (e_value=4e-15) | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=746;; (*ITAG) Solyc05g013090.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6185175-6188183 transcript_region:SL2.40ch05:6185175..6188183- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit (Fragment) (AHRD V1 ***- Q8HSB5_9SOLN); contains Interpro domain(s) IPR002128 NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal "; GO:0055114 NbS00040553g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.4|0.16|0.83|0.8|0.83|6|106|290; (*ITAG) Solyc01g094420.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00040553g0006.1 protein AED:0.41 eAED:0.64 QI:5|0|0|1|0.5|0.33|3|0|358; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00042413g0001.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0|1|1|1|3|0|153; (*ITAG) Solyc10g049530.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00042413g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|68 NbS00001302g0011.1 protein AED:0.18 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|122; (*GB) gi|391738036|sp|P0DI44.1|CASP_SOLTU (e_value=1e-56) RecName: Full=Casparian strip membrane protein 1;; (*SWP) sp|P0DI44|CASP_SOLTU (e_value=3e-58) Casparian strip membrane protein 1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G15290.1 (e_value=8e-30) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:4967094-4967846 FORWARD LENGTH=187;; (*ITAG) Solyc02g067190.2.1 (e_value=3e-49) genomic_reference:SL2.40ch02 gene_region:31964035-31965710 transcript_region:SL2.40ch02:31964035..31965710+ functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_MAIZE); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00001302g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.6|0.8|1|1|5|0|525; (*GB) gi|225452863|ref|XP_002283766.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=1e-41) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc02g067210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31975416-31981655 transcript_region:SL2.40ch02:31975416..31981655- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00001302g0003.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|513; (*GB) gi|225452865|ref|XP_002278558.1| (e_value=6e-140) PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Vitis vinifera];; (*SWP) sp|Q9LXF4|PP384_ARATH (e_value=2e-93) Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1;; (*TAIR) AT5G15280.1 (e_value=2e-94) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4962293-4965976 FORWARD LENGTH=1227;; (*ITAG) Solyc02g067200.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31967014-31970959 transcript_region:SL2.40ch02:31967014..31970959- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001302g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|296082940|emb|CBI22241.3| (e_value=6e-140) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXF4|PP384_ARATH (e_value=3e-99) Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1;; (*TAIR) AT5G15280.1 (e_value=3e-100) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4962293-4965976 FORWARD LENGTH=1227;; (*ITAG) Solyc02g067200.2.1 (e_value=4e-177) genomic_reference:SL2.40ch02 gene_region:31967014-31970959 transcript_region:SL2.40ch02:31967014..31970959- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001302g0004.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|225452865|ref|XP_002278558.1| (e_value=3e-51) PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Vitis vinifera];; (*SWP) sp|Q9LXF4|PP384_ARATH (e_value=6e-25) Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1;; (*TAIR) AT5G15280.1 (e_value=5e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4962293-4965976 FORWARD LENGTH=1227;; (*ITAG) Solyc02g067200.2.1 (e_value=4e-92) genomic_reference:SL2.40ch02 gene_region:31967014-31970959 transcript_region:SL2.40ch02:31967014..31970959- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001302g0005.1 protein AED:0.61 eAED:0.82 QI:0|0|0|0.66|1|1|3|0|135 NbS00035590g0006.1 protein AED:0.28 eAED:0.79 QI:0|0|0|1|0|0.5|2|0|153; (*ITAG) Solyc01g094420.2.1 (e_value=8e-21) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00033037g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|0.75|0|0|4|0|127; (*GB) gi|4038062|gb|AAC97243.1| (e_value=8e-19) Mutator-like transposase [Arabidopsis thaliana];; (*ITAG) Solyc03g093100.1.1 (e_value=5e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00033037g0006.1 protein AED:0.00 eAED:0.00 QI:0|0|0|1|1|1|2|241|478; (*GB) gi|255574486|ref|XP_002528155.1| (e_value=9e-175) UDP-glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=1e-120) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21800.1 (e_value=7e-105) | Symbols: UGT71B8 | UDP-glucosyl transferase 71B8 | chr3:7680243-7681685 REVERSE LENGTH=480;; (*ITAG) Solyc02g081690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40129546-40130991 transcript_region:SL2.40ch02:40129546..40130991+ go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q94IF2_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00033908g0009.1 protein AED:0.17 eAED:0.17 QI:51|0.9|0.90|1|0.8|0.63|11|357|392; (*GB) gi|225463727|ref|XP_002264488.1| (e_value=7e-156) PREDICTED: cytosolic 5'-nucleotidase 3 [Vitis vinifera];; (*SWP) sp|Q5ZID6|5NT3_CHICK (e_value=9e-49) Cytosolic 5'-nucleotidase III OS=Gallus gallus GN=NT5C3 PE=1 SV=3;; (*TAIR) AT2G38680.1 (e_value=1e-131) | Symbols: | 5'-nucleotidases;magnesium ion binding | chr2:16174011-16175873 REVERSE LENGTH=315;; (*ITAG) Solyc11g006420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1128079-1134287 transcript_region:SL2.40ch11:1128079..1134287- go_terms:GO:0005737 functional_description:"5&apos-nucleotidase cytosolic III (AHRD V1 ***- B2GUX5_RAT); contains Interpro domain(s) IPR006434 HAD-superfamily hydrolase, subfamily IE "; GO:0005737 NbS00033908g0010.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|1|1|5|0|779; (*GB) gi|225439372|ref|XP_002270072.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc11g006410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1122705-1126488 transcript_region:SL2.40ch11:1122705..1126488+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbC25995787g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|356536003|ref|XP_003536530.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100778094 [Glycine max];; (*TAIR) AT3G22530.1 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7977774-7978370 REVERSE LENGTH=198;; (*ITAG) Solyc03g005190.2.1 (e_value=7e-45) genomic_reference:SL2.40ch03 gene_region:115979-117377 transcript_region:SL2.40ch03:115979..117377- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 *-*- Q8LD29_ARATH); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00010217g0007.1 protein AED:0.23 eAED:0.24 QI:223|0.71|0.66|0.93|1|1|15|0|604; (*GB) gi|224104817|ref|XP_002313577.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BHY2|NOC4L_MOUSE (e_value=4e-55) Nucleolar complex protein 4 homolog OS=Mus musculus GN=Noc4l PE=2 SV=1;; (*TAIR) AT2G17250.1 (e_value=0.0) | Symbols: EMB2762 | CCAAT-binding factor | chr2:7499573-7502957 FORWARD LENGTH=577;; (*ITAG) Solyc10g074560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57440595-57449785 transcript_region:SL2.40ch10:57440595..57449785+ functional_description:"Nucleolar complex protein 4 homolog (AHRD V1 *--- D3PJK6_9MAXI); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; NbS00010217g0001.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|348; (*GB) gi|359474957|ref|XP_003631558.1| (e_value=1e-153) PREDICTED: uncharacterized protein LOC100853859 [Vitis vinifera];; (*TAIR) AT2G17230.1 (e_value=9e-140) | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494892-7495983 REVERSE LENGTH=363;; (*ITAG) Solyc10g074540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57429414-57430448 transcript_region:SL2.40ch10:57429414..57430448- functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP3_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00029944g0011.1 protein AED:0.16 eAED:0.16 QI:77|1|1|1|0.87|0.77|9|723|209; (*GB) gi|2500047|sp|Q43187.1|IPYR_SOLTU (e_value=5e-139) RecName: Full=Soluble inorganic pyrophosphatase; AltName: Full=Pyrophosphate phospho-hydrolase; Short=PPase;; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=1e-140) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT1G01050.1 (e_value=4e-133) | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31382-32670 REVERSE LENGTH=212;; (*ITAG) Solyc08g083370.2.1 (e_value=8e-148) genomic_reference:SL2.40ch08 gene_region:62998660-63000055 transcript_region:SL2.40ch08:62998660..63000055+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase (AHRD V1 **** Q2HTA8_MEDTR); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00029944g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|218; (*GB) gi|15223354|ref|NP_174575.1| (e_value=1e-98) 50S ribosomal protein L11 [Arabidopsis thaliana];; (*SWP) sp|Q9MAP3|RK11_ARATH (e_value=4e-100) 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1;; (*TAIR) AT1G32990.1 (e_value=3e-101) | Symbols: PRPL11 | plastid ribosomal protein l11 | chr1:11955827-11957139 FORWARD LENGTH=222;; (*ITAG) Solyc08g083350.2.1 (e_value=4e-123) genomic_reference:SL2.40ch08 gene_region:62993669-62996264 transcript_region:SL2.40ch08:62993669..62996264+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B6U1J2_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "; GO:0003735,GO:0005515 NbS00029944g0005.1 protein AED:0.28 eAED:0.47 QI:0|0.5|0|1|0.75|0.6|5|0|117; (*GB) gi|225442545|ref|XP_002284206.1| (e_value=6e-26) PREDICTED: uncharacterized protein LOC100241139 [Vitis vinifera];; (*TAIR) AT3G16250.1 (e_value=6e-24) | Symbols: NDF4 | NDH-dependent cyclic electron flow 1 | chr3:5507091-5508320 REVERSE LENGTH=204;; (*ITAG) Solyc08g083360.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:62996571-62997740 transcript_region:SL2.40ch08:62996571..62997740+ go_terms:GO:0051536 functional_description:"Ferredoxin (AHRD V1 *-*- D8FXV1_9CYAN); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536 NbS00029944g0008.1 protein AED:0.31 eAED:0.31 QI:102|1|0.5|1|1|1|2|0|82; (*GB) gi|225426508|ref|XP_002277915.1| (e_value=2e-26) PREDICTED: mitochondrial import inner membrane translocase subunit Tim13 [Vitis vinifera];; (*SWP) sp|Q9XGY5|TIM13_ORYSJ (e_value=4e-24) Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2;; (*TAIR) AT1G61570.1 (e_value=4e-23) | Symbols: TIM13 | translocase of the inner mitochondrial membrane 13 | chr1:22718897-22719473 REVERSE LENGTH=87;; (*ITAG) Solyc08g083380.2.1 (e_value=3e-32) genomic_reference:SL2.40ch08 gene_region:63000432-63003065 transcript_region:SL2.40ch08:63000432..63003065- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim13 (AHRD V1 ***- B4FYN0_MAIZE); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00060675g0004.1 protein AED:0.08 eAED:0.08 QI:308|0.85|0.75|1|0.71|0.62|8|293|351; (*GB) gi|255569090|ref|XP_002525514.1| (e_value=4e-105) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q55909|Y305_SYNY3 (e_value=2e-21) TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1;; (*TAIR) AT1G22850.1 (e_value=7e-91) | Symbols: | SNARE associated Golgi protein family | chr1:8080671-8082816 REVERSE LENGTH=344;; (*ITAG) Solyc06g064570.2.1 (e_value=2e-123) genomic_reference:SL2.40ch06 gene_region:36624383-36628900 transcript_region:SL2.40ch06:36624383..36628900+ functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B9XJU7_9BACT); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00004182g0007.1 protein AED:0.21 eAED:0.22 QI:0|0|0.5|1|0|0|2|0|438; (*GB) gi|297840375|ref|XP_002888069.1| (e_value=2e-110) OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G61790.1 (e_value=7e-113) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc03g031790.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8556970-8557992 transcript_region:SL2.40ch03:8556970..8557992- go_terms:GO:0015157 functional_description:"Magnesium transporter protein 1 (AHRD V1 **-* C1BXI2_ESOLU); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00004182g0008.1 protein AED:0.24 eAED:0.41 QI:108|0.33|0.25|1|1|1|4|0|372; (*GB) gi|224070130|ref|XP_002303119.1| (e_value=3e-11) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g031780.2.1 (e_value=5e-20) genomic_reference:SL2.40ch03 gene_region:8552272-8554151 transcript_region:SL2.40ch03:8552272..8554151- functional_description:"Unknown Protein (AHRD V1)"; NbS00004182g0205.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0.5|0|3|0|183 NbS00004182g0304.1 protein AED:0.08 eAED:0.08 QI:430|0.83|0.84|1|0.75|0.61|13|311|702 NbS00004575g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|107; (*GB) gi|1563732|emb|CAA65519.1| (e_value=3e-22) unnamed protein product [Nicotiana sylvestris];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=4e-19) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*TAIR) AT2G07785.1 (e_value=3e-22) | Symbols: | NADH dehydrogenase family protein | chr2:3348114-3348413 FORWARD LENGTH=99;; (*ITAG) Solyc00g094530.1.1 (e_value=5e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:15539927-15540316 transcript_region:SL2.40ch00:15539927..15540316- go_terms:GO:0016020 functional_description:"NADH-ubiquinone oxidoreductase chain 1 (AHRD V1 ***- Q5M9U6_TOBAC); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00029324g0008.1 protein AED:0.25 eAED:0.28 QI:0|0|0.33|1|0|0|3|195|75 NbS00029324g0006.1 protein AED:0.25 eAED:0.34 QI:442|0|0.5|1|1|1|2|0|146; (*ITAG) Solyc01g094420.2.1 (e_value=6e-27) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00029324g0007.1 protein AED:0.36 eAED:0.37 QI:166|0.4|0.33|0.83|0.6|0.5|6|0|238; (*GB) gi|225435731|ref|XP_002285703.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100263951 [Vitis vinifera];; (*TAIR) AT3G13570.1 (e_value=7e-28) | Symbols: SCL30A, At-SCL30A | SC35-like splicing factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262;; (*ITAG) Solyc01g005820.2.1 (e_value=1e-42) genomic_reference:SL2.40ch01 gene_region:537499-541732 transcript_region:SL2.40ch01:537499..541732+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 4 (AHRD V1 *--- B6U7F9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbC26241325g0004.1 protein AED:0.04 eAED:0.05 QI:78|1|0.5|1|0|0|2|0|290; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=4e-46) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=5e-68) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00022239g0004.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.66|0|0|3|0|91 NbC25793791g0004.1 protein AED:0.05 eAED:0.05 QI:166|0.5|0.33|0.66|1|0.66|3|639|83 NbS00033724g0002.1 protein AED:0.20 eAED:0.28 QI:0|0|0|1|1|1|2|0|139; (*GB) gi|359488099|ref|XP_002266715.2| (e_value=6e-44) PREDICTED: ankyrin repeat domain-containing protein 13B-like [Vitis vinifera];; (*TAIR) AT3G04470.1 (e_value=1e-24) | Symbols: | Ankyrin repeat family protein | chr3:1189841-1191853 REVERSE LENGTH=640;; (*ITAG) Solyc05g054970.2.1 (e_value=4e-63) genomic_reference:SL2.40ch05 gene_region:63896453-63900703 transcript_region:SL2.40ch05:63896453..63900703- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00033724g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|4|283|269; (*GB) gi|118487925|gb|ABK95784.1| (e_value=5e-97) unknown [Populus trichocarpa];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-38) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT2G33430.1 (e_value=4e-88) | Symbols: DAL1, DAL | differentiation and greening-like 1 | chr2:14162732-14164729 FORWARD LENGTH=219;; (*ITAG) Solyc05g054960.2.1 (e_value=4e-135) genomic_reference:SL2.40ch05 gene_region:63892360-63895361 transcript_region:SL2.40ch05:63892360..63895361+ functional_description:"DAG protein (AHRD V1 **-- B6TMC1_MAIZE)"; NbS00033724g0010.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|0.33|3|0|93; (*GB) gi|219688708|dbj|BAH09867.1| (e_value=5e-47) peroxin 12 [Nicotiana tabacum];; (*SWP) sp|Q9M841|PEX12_ARATH (e_value=3e-40) Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12 PE=1 SV=2;; (*TAIR) AT3G04460.1 (e_value=3e-41) | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3:1186641-1189094 FORWARD LENGTH=393;; (*ITAG) Solyc05g054950.2.1 (e_value=4e-48) genomic_reference:SL2.40ch05 gene_region:63884549-63891458 transcript_region:SL2.40ch05:63884549..63891458+ go_terms:GO:0008022,GO:0008270 functional_description:"Peroxisome assembly protein 12 (AHRD V1 ***- C0HB20_SALSA); contains Interpro domain(s) IPR017375 Peroxisome assembly, p12 "; GO:0008022,GO:0008270 NbS00044128g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|0.9|0.88|0.8|10|374|871; (*GB) gi|297836774|ref|XP_002886269.1| (e_value=0.0) hypothetical protein ARALYDRAFT_900377 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT2G20300.1 (e_value=0.0) | Symbols: ALE2 | Protein kinase superfamily protein | chr2:8756475-8759845 REVERSE LENGTH=744;; (*ITAG) Solyc09g064270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57036067-57040077 transcript_region:SL2.40ch09:57036067..57040077- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00044128g0012.1 protein AED:0.23 eAED:0.23 QI:128|0.83|0.84|1|0.58|0.53|13|577|361; (*GB) gi|255585902|ref|XP_002533624.1| (e_value=5e-147) kinase, putative [Ricinus communis];; (*TAIR) AT4G28706.3 (e_value=5e-148) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:14167805-14170619 FORWARD LENGTH=403;; (*ITAG) Solyc09g064240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56981877-56992914 transcript_region:SL2.40ch09:56981877..56992914- go_terms:GO:0005515 functional_description:"Kinase pfkB family protein (AHRD V1 ***- Q7XDM4_ORYSJ); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00008028g0022.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|0.33|3|0|327; (*GB) gi|218196572|gb|EEC78999.1| (e_value=1e-176) hypothetical protein OsI_19498 [Oryza sativa Indica Group];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=2e-104) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT2G22360.1 (e_value=1e-173) | Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD LENGTH=442;; (*ITAG) Solyc01g105340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85301588-85307119 transcript_region:SL2.40ch01:85301588..85307119+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00008028g0016.1 protein AED:0.30 eAED:0.38 QI:794|0.5|0.33|1|0.5|0.66|3|0|58 NbS00008028g0023.1 protein AED:0.42 eAED:0.53 QI:0|0|0|1|0|0.5|2|0|79; (*ITAG) Solyc01g105350.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85309480-85311558 transcript_region:SL2.40ch01:85309480..85311558+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00008028g0020.1 protein AED:0.07 eAED:0.07 QI:264|0.75|1|1|1|1|5|311|262; (*GB) gi|30697978|ref|NP_851263.1| (e_value=2e-104) Aldolase-type TIM barrel family protein [Arabidopsis thaliana];; (*SWP) sp|O05413|2NPD_BACSU (e_value=1e-11) Probable nitronate monooxygenase OS=Bacillus subtilis (strain 168) GN=yrpB PE=3 SV=1;; (*TAIR) AT5G64250.1 (e_value=4e-107) | Symbols: | Aldolase-type TIM barrel family protein | chr5:25697623-25698752 REVERSE LENGTH=293;; (*ITAG) Solyc01g105370.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:85318617-85322249 transcript_region:SL2.40ch01:85318617..85322249- go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl-(Acyl-carrier-protein) reductase II (AHRD V1 **-- C7IPB6_THEET); contains Interpro domain(s) IPR004136 2-nitropropane dioxygenase, NPD "; GO:0008152,GO:0055114 NbS00008028g0025.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|0.66|3|0|912; (*GB) gi|147772680|emb|CAN64936.1| (e_value=1e-169) hypothetical protein VITISV_021553 [Vitis vinifera];; (*SWP) sp|Q9LME6|MBD8_ARATH (e_value=4e-27) Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1;; (*TAIR) AT1G22310.2 (e_value=3e-28) | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 | chr1:7881714-7883644 REVERSE LENGTH=524;; (*ITAG) Solyc01g105330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85291500-85296505 transcript_region:SL2.40ch01:85291500..85296505- go_terms:GO:0003677,GO:0005622 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9GUW9_POPTR); contains Interpro domain(s) IPR016177 DNA-binding, integrase-type "; GO:0003677,GO:0005622 NbS00008028g0019.1 protein AED:0.35 eAED:0.36 QI:210|0|0.5|1|0|0.5|2|0|27 NbS00008028g0024.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|222; (*GB) gi|225465720|ref|XP_002263100.1| (e_value=2e-84) PREDICTED: UDP-glycosyltransferase 85A2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=1e-69) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=1e-70) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc01g105350.1.1 (e_value=3e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85309480-85311558 transcript_region:SL2.40ch01:85309480..85311558+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00044474g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|57014003|ref|YP_173474.1| (e_value=2e-60) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=2e-30) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=2e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00020120g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|255566181|ref|XP_002524078.1| (e_value=9e-56) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FG21|ATL71_ARATH (e_value=6e-44) Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana GN=ATL71 PE=3 SV=1;; (*TAIR) AT5G06490.1 (e_value=4e-45) | Symbols: | RING/U-box superfamily protein | chr5:1977996-1978589 REVERSE LENGTH=197;; (*ITAG) Solyc10g081790.1.1 (e_value=6e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62109426-62109998 transcript_region:SL2.40ch10:62109426..62109998+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020120g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|225439364|ref|XP_002269714.1| (e_value=1e-50) PREDICTED: RING-H2 finger protein ATL70-like [Vitis vinifera];; (*SWP) sp|Q8RX29|ATL70_ARATH (e_value=2e-36) RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1;; (*TAIR) AT2G35910.1 (e_value=1e-37) | Symbols: | RING/U-box superfamily protein | chr2:15073225-15073878 REVERSE LENGTH=217;; (*ITAG) Solyc10g081790.1.1 (e_value=6e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62109426-62109998 transcript_region:SL2.40ch10:62109426..62109998+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003084g0004.1 protein AED:0.21 eAED:0.27 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|57013964|ref|YP_173436.1| (e_value=1e-32) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00003084g0005.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0|2|0|63; (*GB) gi|57013964|ref|YP_173436.1| (e_value=5e-16) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00004224g0005.1 protein AED:0.16 eAED:0.19 QI:174|0.12|0.44|0.77|0.12|0.11|9|350|290; (*GB) gi|225429398|ref|XP_002275238.1| (e_value=1e-81) PREDICTED: derlin-1 [Vitis vinifera];; (*SWP) sp|Q8VZU9|DERL1_ARATH (e_value=6e-75) Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1;; (*TAIR) AT4G29330.1 (e_value=4e-76) | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952 FORWARD LENGTH=266;; (*ITAG) Solyc05g026310.2.1 (e_value=5e-125) genomic_reference:SL2.40ch05 gene_region:40385875-40400417 transcript_region:SL2.40ch05:40385875..40400417- go_terms:GO:0005515 functional_description:"Derlin-3 (AHRD V1 ***- B6U3C7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0005515 NbS00028161g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|225432760|ref|XP_002279192.1| (e_value=2e-147) PREDICTED: leucine-rich repeat extensin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9LUI1|LRX6_ARATH (e_value=2e-137) Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1;; (*TAIR) AT3G22800.1 (e_value=2e-138) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:8063063-8064475 REVERSE LENGTH=470;; (*ITAG) Solyc09g082530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63645808-63646989 transcript_region:SL2.40ch09:63645808..63646989- go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00028161g0012.1 protein AED:0.21 eAED:0.23 QI:186|0.5|0.4|1|0|0.2|5|0|1193; (*GB) gi|359477550|ref|XP_003631994.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera];; (*TAIR) AT3G22790.1 (e_value=0.0) | Symbols: | Kinase interacting (KIP1-like) family protein | chr3:8052446-8057888 REVERSE LENGTH=1728;; (*ITAG) Solyc09g082510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63633907-63641296 transcript_region:SL2.40ch09:63633907..63641296+ functional_description:"Kinase interacting family protein (AHRD V1 **-- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00028161g0013.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0|0.75|0.66|0.5|4|0|894; (*GB) gi|147766921|emb|CAN67523.1| (e_value=3e-176) hypothetical protein VITISV_020207 [Vitis vinifera];; (*TAIR) AT4G14760.1 (e_value=1e-76) | Symbols: | kinase interacting (KIP1-like) family protein | chr4:8475718-8481094 FORWARD LENGTH=1710;; (*ITAG) Solyc09g082510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63633907-63641296 transcript_region:SL2.40ch09:63633907..63641296+ functional_description:"Kinase interacting family protein (AHRD V1 **-- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00037429g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|234; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00040496g0004.1 protein AED:0.17 eAED:0.17 QI:188|1|1|1|1|1|4|453|220; (*GB) gi|350538193|ref|NP_001234587.1| (e_value=2e-104) Ran binding protein-1 [Solanum lycopersicum];; (*SWP) sp|P92985|RBP1C_ARATH (e_value=1e-85) Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1;; (*TAIR) AT5G58590.1 (e_value=9e-87) | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680319-23681714 REVERSE LENGTH=219;; (*ITAG) Solyc08g062660.2.1 (e_value=5e-107) genomic_reference:SL2.40ch08 gene_region:48903019-48905978 transcript_region:SL2.40ch08:48903019..48905978+ go_terms:GO:0008536 functional_description:"Ran GTPase binding protein (AHRD V1 **** C4R913_PICPG); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0008536 NbS00048491g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.76|1|0.83|0.76|13|640|864; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44210946-44216059 transcript_region:SL2.40ch12:44210946..44216059- go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00015449g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|613; (*GB) gi|229609831|gb|ACQ83531.1| (e_value=4e-130) CBL-interacting protein kinase 15 [Vitis vinifera];; (*SWP) sp|Q9LEU7|CIPK5_ARATH (e_value=2e-123) CBL-interacting serine/threonine-protein kinase 5 OS=Arabidopsis thaliana GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G10930.1 (e_value=1e-124) | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein kinase 5 | chr5:3445569-3446906 REVERSE LENGTH=445;; (*ITAG) Solyc06g068450.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38807866-38809185 transcript_region:SL2.40ch06:38807866..38809185- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase (AHRD V1 **** A5YAI9_GOSHI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00015449g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.36|0.25|0.91|0.63|0.58|12|0|700; (*GB) gi|297819380|ref|XP_002877573.1| (e_value=2e-162) hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84K47|AB2A_ARATH (e_value=2e-162) ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1;; (*TAIR) AT3G47730.1 (e_value=2e-163) | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassette A2 | chr3:17594342-17598828 REVERSE LENGTH=983;; (*ITAG) Solyc06g070960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39966763-39972188 transcript_region:SL2.40ch06:39966763..39972188+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00001497g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|4|0|187; (*GB) gi|3603295|gb|AAC35787.1| (e_value=2e-54) S-adenosyl-methionine cycloartenol-C24-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q6ZIX2|SMT1_ORYSJ (e_value=2e-36) Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1;; (*TAIR) AT5G13710.2 (e_value=6e-37) | Symbols: SMT1, CPH | sterol methyltransferase 1 | chr5:4424048-4426866 REVERSE LENGTH=336;; (*ITAG) Solyc01g087560.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:74268028-74274007 transcript_region:SL2.40ch01:74268028..74274007+ go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** Q2QDF7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00008192g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|266; (*GB) gi|147792212|emb|CAN72981.1| (e_value=7e-76) hypothetical protein VITISV_009032 [Vitis vinifera];; (*SWP) sp|Q8LC79|GAT18_ARATH (e_value=2e-46) GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2;; (*TAIR) AT3G50870.1 (e_value=1e-47) | Symbols: MNP, HAN, GATA18 | GATA type zinc finger transcription factor family protein | chr3:18911112-18912369 FORWARD LENGTH=295;; (*ITAG) Solyc02g085190.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42744052-42744903 transcript_region:SL2.40ch02:42744052..42744903- go_terms:GO:0030374 functional_description:"GATA transcription factor 19 (AHRD V1 *-** B6TS85_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0030374 NbS00006976g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|0.75|1|1|4|0|194; (*GB) gi|4589884|dbj|BAA76905.1| (e_value=2e-115) homeobox 22 [Nicotiana tabacum];; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=6e-54) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.1 (e_value=5e-55) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc05g005090.2.1 (e_value=6e-79) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00038992g0003.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|1|1|2|0|82; (*GB) gi|242087489|ref|XP_002439577.1| (e_value=9e-19) hypothetical protein SORBIDRAFT_09g014016 [Sorghum bicolor];; (*SWP) sp|P93401|NU2M_OENBE (e_value=7e-16) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=1e-16) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=6e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00038992g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|0|0|2|0|90; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=1e-37) NADH dehydrogenase subunit [Medicago truncatula];; (*ITAG) Solyc00g244300.1.1 (e_value=6e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19966946-19967203 transcript_region:SL2.40ch00:19966946..19967203+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007151g0004.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.4|0.8|0.5|0.4|5|0|203; (*GB) gi|255571479|ref|XP_002526687.1| (e_value=5e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G21530.1 (e_value=1e-33) | Symbols: | SMAD/FHA domain-containing protein | chr2:9219372-9220464 FORWARD LENGTH=209;; (*ITAG) Solyc01g009080.2.1 (e_value=6e-75) genomic_reference:SL2.40ch01 gene_region:3091052-3093978 transcript_region:SL2.40ch01:3091052..3093978+ functional_description:"FHA domain containing protein (AHRD V1 ***- B6TP39_MAIZE); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00003113g0009.1 protein AED:0.03 eAED:0.03 QI:71|1|1|1|1|1|7|227|370; (*GB) gi|225441421|ref|XP_002279026.1| (e_value=7e-111) PREDICTED: non-structural maintenance of chromosome element 4 [Vitis vinifera];; (*SWP) sp|Q6BDR8|NSE4_SCHPO (e_value=3e-16) Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse4 PE=1 SV=1;; (*TAIR) AT1G51130.1 (e_value=1e-96) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc12g041890.1.1 (e_value=3e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40943251-40945691 transcript_region:SL2.40ch12:40943251..40945691- functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 *--- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00003113g0008.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|255544738|ref|XP_002513430.1| (e_value=4e-23) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G44430.1 (e_value=3e-25) | Symbols: | DNA-binding bromodomain-containing protein | chr2:18333603-18336165 FORWARD LENGTH=646;; (*ITAG) Solyc01g006470.1.1 (e_value=1e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1070708-1073203 transcript_region:SL2.40ch01:1070708..1073203- functional_description:"Bromodomain protein (AHRD V1 *-*- B9GYV6_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00003113g0010.1 protein AED:0.20 eAED:0.20 QI:36|0.90|0.91|1|0.45|0.66|12|236|375; (*GB) gi|2204236|emb|CAA74176.1| (e_value=0.0) enoyl-ACP reductase [Nicotiana tabacum];; (*SWP) sp|P80030|FABI_BRANA (e_value=3e-166) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2;; (*TAIR) AT2G05990.2 (e_value=3e-172) | Symbols: MOD1, ENR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390;; (*ITAG) Solyc01g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1058119-1063305 transcript_region:SL2.40ch01:1058119..1063305+ go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl reductase (AHRD V1 ***- P93062_BRANA); contains Interpro domain(s) IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) "; GO:0008152,GO:0055114 NbS00003113g0012.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|0|0|2|0|113; (*ITAG) Solyc01g006470.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1070708-1073203 transcript_region:SL2.40ch01:1070708..1073203- functional_description:"Bromodomain protein (AHRD V1 *-*- B9GYV6_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00032109g0006.1 protein AED:0.27 eAED:0.27 QI:109|0.8|0.83|1|0.8|0.83|6|379|193; (*GB) gi|91107145|gb|ABE11607.1| (e_value=2e-88) COV1-like protein [Solanum chacoense];; (*TAIR) AT1G43130.1 (e_value=3e-88) | Symbols: LCV2 | like COV 2 | chr1:16228661-16231158 REVERSE LENGTH=261;; (*ITAG) Solyc04g071710.2.1 (e_value=3e-108) genomic_reference:SL2.40ch04 gene_region:56272080-56279688 transcript_region:SL2.40ch04:56272080..56279688- functional_description:"Integral membrane protein (AHRD V1 **-- A8JE84_CHLRE); contains Interpro domain(s) IPR007462 Protein of unknown function DUF502 "; NbS00046335g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|119 NbS00046335g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|140 NbS00019428g0011.1 protein AED:0.00 eAED:0.00 QI:344|1|1|1|1|1|3|146|110; (*GB) gi|359479937|ref|XP_002269588.2| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100257206 [Vitis vinifera];; (*SWP) sp|Q9FJ10|GAT16_ARATH (e_value=8e-23) GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1;; (*TAIR) AT5G49300.1 (e_value=6e-24) | Symbols: GATA16 | GATA transcription factor 16 | chr5:19984849-19985475 REVERSE LENGTH=139;; (*ITAG) Solyc09g075610.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:62784944-62785676 transcript_region:SL2.40ch09:62784944..62785676- go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00019428g0010.1 protein AED:0.10 eAED:0.10 QI:444|0.5|0.66|1|1|1|3|0|369; (*GB) gi|255548537|ref|XP_002515325.1| (e_value=1e-152) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT4G13030.1 (e_value=3e-23) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7607400-7609656 FORWARD LENGTH=481;; (*ITAG) Solyc09g075620.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:62787508-62789526 transcript_region:SL2.40ch09:62787508..62789526- functional_description:"ATP binding protein (AHRD V1 ***- B6TPV9_MAIZE)"; NbS00019428g0007.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|227; (*GB) gi|356572769|ref|XP_003554538.1| (e_value=8e-62) PREDICTED: uncharacterized protein LOC100806287 [Glycine max];; (*TAIR) AT1G02700.1 (e_value=3e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:588367-589232 FORWARD LENGTH=247;; (*ITAG) Solyc09g075600.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62776021-62776260 transcript_region:SL2.40ch09:62776021..62776260- functional_description:"Unknown Protein (AHRD V1)"; NbS00019428g0001.1 protein AED:0.25 eAED:0.35 QI:0|0|0|1|1|1|3|0|233; (*GB) gi|57013921|ref|YP_173394.1| (e_value=2e-110) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=4e-106) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=8e-69) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=2e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00014447g0012.1 protein AED:0.02 eAED:0.02 QI:180|1|1|1|0.55|0.7|10|225|266; (*GB) gi|225453957|ref|XP_002274132.1| (e_value=5e-120) PREDICTED: spindle and kinetochore-associated protein 1 homolog [Vitis vinifera];; (*SWP) sp|Q9LZZ7|SKA1_ARATH (e_value=5e-118) Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana GN=At3g60660 PE=2 SV=1;; (*TAIR) AT3G60660.1 (e_value=4e-119) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1395 (InterPro:IPR009829); Has 131 Blast hits to 131 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:22421481-22423167 FORWARD LENGTH=272;; (*ITAG) Solyc05g050900.2.1 (e_value=4e-165) genomic_reference:SL2.40ch05 gene_region:60272468-60276378 transcript_region:SL2.40ch05:60272468..60276378+ functional_description:"Spindle and kinetochore-associated protein 1 homolog (AHRD V1 ***- SKA1_ARATH); contains Interpro domain(s) IPR009829 Protein of unknown function DUF1395 "; NbS00014447g0008.1 protein AED:0.11 eAED:0.04 QI:89|0.6|0.66|0.83|0.6|0.83|6|798|275; (*GB) gi|225449849|ref|XP_002265037.1| (e_value=3e-72) PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 3-like [Vitis vinifera];; (*SWP) sp|A8MRX0|GSOX5_ARATH (e_value=4e-66) Flavin-containing monooxygenase FMO GS-OX5 OS=Arabidopsis thaliana GN=FMOGS-OX5 PE=2 SV=2;; (*TAIR) AT1G12140.2 (e_value=1e-67) | Symbols: FMO GS-OX5 | flavin-monooxygenase glucosinolate S-oxygenase 5 | chr1:4121386-4123366 FORWARD LENGTH=457;; (*ITAG) Solyc05g050910.2.1 (e_value=3e-110) genomic_reference:SL2.40ch05 gene_region:60276994-60279958 transcript_region:SL2.40ch05:60276994..60279958- go_terms:GO:0004499 functional_description:"Flavin-monooxygenase (AHRD V1 **** C5H9Q5_BRARP); contains Interpro domain(s) IPR000960 Flavin-containing monooxygenase FMO "; GO:0004499 NbS00014447g0013.1 protein AED:0.12 eAED:0.16 QI:0|0.25|0|1|0|0|5|0|296; (*GB) gi|359481251|ref|XP_002268259.2| (e_value=2e-135) PREDICTED: cationic peroxidase 1-like [Vitis vinifera];; (*SWP) sp|P22195|PER1_ARAHY (e_value=9e-128) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=2e-111) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc05g050880.2.1 (e_value=7e-157) genomic_reference:SL2.40ch05 gene_region:60237294-60239259 transcript_region:SL2.40ch05:60237294..60239259- go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q4W2V5_PICAB); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00014447g0010.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|454; (*GB) gi|1786142|dbj|BAA19114.1| (e_value=0.0) PEThy;ZPT4-1 [Petunia x hybrida];; (*SWP) sp|O65499|ZAT3_ARATH (e_value=7e-24) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT1G02040.1 (e_value=5e-26) | Symbols: | C2H2-type zinc finger family protein | chr1:358104-359078 REVERSE LENGTH=324;; (*ITAG) Solyc05g050860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60224551-60225996 transcript_region:SL2.40ch05:60224551..60225996+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00005570g0014.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|238; (*GB) gi|255558374|ref|XP_002520214.1| (e_value=8e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q39264|ZFP5_ARATH (e_value=2e-14) Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1;; (*TAIR) AT1G10480.1 (e_value=2e-15) | Symbols: ZFP5 | zinc finger protein 5 | chr1:3449734-3450369 FORWARD LENGTH=211;; (*ITAG) Solyc05g006310.1.1 (e_value=4e-65) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:960800-961552 transcript_region:SL2.40ch05:960800..961552- go_terms:GO:0003700 functional_description:"Zinc finger protein 6 (AHRD V1 *-*- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00005570g0013.1 protein AED:0.13 eAED:0.20 QI:0|0|0|0.42|0.33|0.57|7|0|432; (*GB) gi|255558372|ref|XP_002520213.1| (e_value=1e-27) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g006320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:967042-972249 transcript_region:SL2.40ch05:967042..972249- functional_description:"SAM domain family protein (AHRD V1 *--- B6TW56_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00005570g0005.1 protein AED:0.15 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|1220; (*GB) gi|359494129|ref|XP_002278428.2| (e_value=0.0) PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera];; (*SWP) sp|Q9T048|DRL27_ARATH (e_value=4e-77) Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1;; (*TAIR) AT4G27190.1 (e_value=3e-78) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13620977-13623934 REVERSE LENGTH=985;; (*ITAG) Solyc04g005550.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:362573-366873 transcript_region:SL2.40ch04:362573..366873+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00005570g0015.1 protein AED:0.18 eAED:0.23 QI:0|0|0|1|0|0.33|3|0|135; (*ITAG) Solyc03g071760.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00057655g0009.1 protein AED:0.12 eAED:0.12 QI:189|0.8|0.83|1|0.6|0.5|6|202|735; (*GB) gi|371917282|dbj|BAL44717.1| (e_value=0.0) SlArf/Xyl2 [Solanum lycopersicum];; (*SWP) sp|Q94KD8|BXL2_ARATH (e_value=0.0) Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1;; (*TAIR) AT1G02640.1 (e_value=0.0) | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:564293-567580 FORWARD LENGTH=768;; (*ITAG) Solyc01g079570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71151785-71157448 transcript_region:SL2.40ch01:71151785..71157448+ go_terms:GO:0005975 functional_description:"Beta xylosidase (AHRD V1 ***- Q6RXY3_FRAAN); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00057655g0012.1 protein AED:0.33 eAED:0.78 QI:0|0|0|1|0|0|2|0|123 NbS00057655g0010.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|132861|sp|P21434.1|RK2_NICDE (e_value=1e-26) RecName: Full=50S ribosomal protein L2, chloroplastic;; (*SWP) sp|P21434|RK2_NICDE (e_value=4e-28) 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=9e-27) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00057655g0011.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|88; (*GB) gi|323149132|ref|YP_004222696.1| (e_value=1e-21) NADH-plastoquinone oxidoreductase subunit 4 [Anthriscus cerefolium];; (*SWP) sp|Q2PMN2|NU4C_SOYBN (e_value=6e-23) NAD(P)H-quinone oxidoreductase chain 4, chloroplastic OS=Glycine max GN=ndhD PE=3 SV=1;; (*ITAG) ATCG01050.1 (e_value=4e-21) | Symbols: NDHD | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:115665-117185 REVERSE LENGTH=506; NbS00027146g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.93|0.82|1|1|1|17|233|1743; (*GB) gi|359475390|ref|XP_002281738.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255624 [Vitis vinifera];; (*TAIR) AT3G19050.1 (e_value=2e-145) | Symbols: POK2 | phragmoplast orienting kinesin 2 | chr3:6578047-6590106 FORWARD LENGTH=2771;; (*ITAG) Solyc01g108670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87657336-87672745 transcript_region:SL2.40ch01:87657336..87672745- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q75LL2_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00027146g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.83|1|0.81|0.91|12|0|364; (*GB) gi|156763844|emb|CAO99124.1| (e_value=0.0) putative reductase [Nicotiana tabacum];; (*SWP) sp|Q93Z70|ARGC_ARATH (e_value=3e-169) Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2;; (*TAIR) AT2G19940.2 (e_value=2e-170) | Symbols: | oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding | chr2:8613168-8615649 FORWARD LENGTH=401;; (*ITAG) Solyc01g108660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87650490-87656659 transcript_region:SL2.40ch01:87650490..87656659- go_terms:GO:0008800 functional_description:"N-acetyl-gamma-glutamyl-phosphate reductase (AHRD V1 ***- A7WPL0_TOBAC); contains Interpro domain(s) IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase "; GO:0008800 NbS00027146g0013.1 protein AED:0.36 eAED:0.36 QI:0|0.86|0.69|1|0.72|0.78|23|0|1199; (*GB) gi|255561647|ref|XP_002521833.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=2e-120) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G19050.1 (e_value=0.0) | Symbols: POK2 | phragmoplast orienting kinesin 2 | chr3:6578047-6590106 FORWARD LENGTH=2771;; (*ITAG) Solyc01g108670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87657336-87672745 transcript_region:SL2.40ch01:87657336..87672745- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q75LL2_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbC25090256g0001.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|0|0|2|0|65; (*GB) gi|311893229|dbj|BAJ25786.1| (e_value=5e-25) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=4e-15) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*ITAG) Solyc04g007760.2.1 (e_value=7e-26) genomic_reference:SL2.40ch04 gene_region:1435905-1437368 transcript_region:SL2.40ch04:1435905..1437368+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00016326g0001.1 protein AED:0.21 eAED:0.22 QI:158|0|0.5|1|0|0.5|2|0|348; (*GB) gi|350535390|ref|NP_001234448.1| (e_value=3e-171) CONSTANS-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FHH8|COL5_ARATH (e_value=9e-94) Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2;; (*TAIR) AT5G57660.1 (e_value=7e-95) | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355;; (*ITAG) Solyc07g006630.2.1 (e_value=6e-174) genomic_reference:SL2.40ch07 gene_region:1494827-1496702 transcript_region:SL2.40ch07:1494827..1496702- go_terms:GO:0003700 functional_description:"CONSTANS-like protein (AHRD V1 ***- B2MW87_SOLLC); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00003163g0007.1 protein AED:0.07 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|113205171|gb|AAT40519.2| (e_value=2e-17) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc07g064380.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00003163g0015.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|0.66|3|0|228 NbS00003163g0009.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|3|0|252; (*GB) gi|22128589|gb|AAM52340.1| (e_value=5e-62) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9FMD3|PP389_ARATH (e_value=5e-34) Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1;; (*TAIR) AT5G16640.1 (e_value=4e-35) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:5461031-5462545 FORWARD LENGTH=504;; (*ITAG) Solyc06g007740.1.1 (e_value=3e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00003163g0011.1 protein AED:0.68 eAED:0.88 QI:0|0|0|0.25|1|1|8|0|186 NbS00039295g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|462|564; (*GB) gi|359478768|ref|XP_002283262.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera];; (*SWP) sp|Q9SMZ2|PP347_ARATH (e_value=4e-126) Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1;; (*TAIR) AT4G33170.1 (e_value=3e-127) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15995701-15998673 REVERSE LENGTH=990;; (*ITAG) Solyc03g120460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62898588-62902523 transcript_region:SL2.40ch03:62898588..62902523- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00048600g0004.1 protein AED:0.06 eAED:0.06 QI:132|1|1|1|0|0.33|3|59|152; (*GB) gi|351726052|ref|NP_001238649.1| (e_value=6e-69) uncharacterized protein LOC100500473 [Glycine max];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-34) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G39700.1 (e_value=8e-53) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:18424265-18424906 FORWARD LENGTH=158;; (*ITAG) Solyc05g051820.2.1 (e_value=4e-72) genomic_reference:SL2.40ch05 gene_region:61373808-61375430 transcript_region:SL2.40ch05:61373808..61375430+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00019685g0007.1 protein AED:0.51 eAED:0.51 QI:39|0|0.5|0.5|0|0.5|2|17|38 NbS00019685g0009.1 protein AED:0.36 eAED:0.35 QI:273|1|0.92|1|0.25|0.30|13|900|118; (*GB) gi|359478357|ref|XP_002285240.2| (e_value=8e-29) PREDICTED: uncharacterized protein LOC100267242 isoform 1 [Vitis vinifera];; (*TAIR) AT2G28310.3 (e_value=3e-28) | Symbols: | Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374;; (*ITAG) Solyc06g075110.2.1 (e_value=9e-54) genomic_reference:SL2.40ch06 gene_region:42996086-43002431 transcript_region:SL2.40ch06:42996086..43002431+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00019685g0008.1 protein AED:0.37 eAED:0.42 QI:175|0|0.33|1|0.5|0.33|3|0|179; (*GB) gi|12711287|emb|CAC28528.1| (e_value=2e-57) GATA-1 zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q6DBP8|GAT11_ARATH (e_value=3e-44) GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1;; (*TAIR) AT1G08010.2 (e_value=2e-45) | Symbols: GATA11 | GATA transcription factor 11 | chr1:2486202-2487402 REVERSE LENGTH=303;; (*ITAG) Solyc06g075140.2.1 (e_value=2e-71) genomic_reference:SL2.40ch06 gene_region:43016241-43019613 transcript_region:SL2.40ch06:43016241..43019613+ go_terms:GO:0004997,GO:0046983 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0004997,GO:0046983 NbC25589163g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|156; (*GB) gi|224118636|ref|XP_002331411.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g016050.2.1 (e_value=8e-68) genomic_reference:SL2.40ch07 gene_region:6215259-6216379 transcript_region:SL2.40ch07:6215259..6216379+ go_terms:GO:0008923 functional_description:"Lysine decarboxylase (AHRD V1 **** Q8YMP6_ANASP); contains Interpro domain(s) IPR000310 Orn/Lys/Arg decarboxylase, major region "; GO:0008923 NbS00000435g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.86|0.79|0.95|0.78|0.79|24|97|1489; (*GB) gi|224138820|ref|XP_002326698.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19082005-19089800 FORWARD LENGTH=1421;; (*ITAG) Solyc08g077430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58470265-58491077 transcript_region:SL2.40ch08:58470265..58491077+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7MQL9_ARALY)"; NbC24451218g0004.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|113; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=2e-49) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G79860.1 (e_value=8e-55) | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-nucleotide exchange factor 12 | chr1:30042172-30044092 REVERSE LENGTH=515;; (*ITAG) Solyc07g032730.2.1 (e_value=9e-75) genomic_reference:SL2.40ch07 gene_region:40595047-40596909 transcript_region:SL2.40ch07:40595047..40596909+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00023152g0004.1 protein AED:0.25 eAED:0.25 QI:98|1|0.75|1|0.33|0.5|4|0|169; (*GB) gi|297736978|emb|CBI26179.3| (e_value=8e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q60990|RBY1B_MOUSE (e_value=5e-12) RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=3;; (*TAIR) AT5G19030.1 (e_value=4e-28) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6357503-6359081 REVERSE LENGTH=172;; (*ITAG) Solyc06g054380.2.1 (e_value=3e-75) genomic_reference:SL2.40ch06 gene_region:33658060-33660389 transcript_region:SL2.40ch06:33658060..33660389+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *-*- Q941H9_TOBAC); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbC24502407g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|109727320|gb|ABG45945.1| (e_value=6e-91) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-34) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=2e-80) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=6e-97) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00017534g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|1|2|0|152; (*GB) gi|356496400|ref|XP_003517056.1| (e_value=5e-21) PREDICTED: uncharacterized protein LOC100797900 [Glycine max];; (*TAIR) AT4G17900.1 (e_value=1e-22) | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227;; (*ITAG) Solyc08g005100.2.1 (e_value=3e-25) genomic_reference:SL2.40ch08 gene_region:70109-72816 transcript_region:SL2.40ch08:70109..72816+ go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **-* D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00043144g0002.1 protein AED:0.41 eAED:0.41 QI:17|0|0|0.5|1|0.75|4|0|188; (*GB) gi|75291821|sp|Q6R567.1|RMA1_CAPAN (e_value=2e-44) RecName: Full=E3 ubiquitin-protein ligase RMA1H1; AltName: Full=Protein RING membrane-anchor 1 homolog 1;; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=7e-46) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*ITAG) Solyc12g010670.1.1 (e_value=8e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3614742-3615416 transcript_region:SL2.40ch12:3614742..3615416+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00060988g0004.1 protein AED:0.31 eAED:0.33 QI:0|0|0.25|1|0.66|0.75|4|0|324; (*GB) gi|296086694|emb|CBI32329.3| (e_value=8e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M8J9|BPM2_ARATH (e_value=6e-128) BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1;; (*TAIR) AT3G06190.2 (e_value=1e-142) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=295;; (*ITAG) Solyc09g072980.2.1 (e_value=2e-152) genomic_reference:SL2.40ch09 gene_region:61139516-61145785 transcript_region:SL2.40ch09:61139516..61145785- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00002841g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.11|0.2|0.7|1|1|10|0|811; (*GB) gi|224140377|ref|XP_002323559.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=0.0) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=0.0) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc09g014220.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5712333-5715002 transcript_region:SL2.40ch09:5712333..5715002- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00002841g0012.1 protein AED:0.25 eAED:0.27 QI:0|1|0|1|1|1|2|0|260; (*GB) gi|255586503|ref|XP_002533892.1| (e_value=3e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09050.1 (e_value=9e-94) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr3:2764860-2765907 FORWARD LENGTH=258;; (*ITAG) Solyc10g085080.1.1 (e_value=1e-120) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63720057-63721795 transcript_region:SL2.40ch10:63720057..63721795- functional_description:"Unknown Protein (AHRD V1)"; NbS00002841g0013.1 protein AED:0.13 eAED:0.13 QI:0|0|0.33|0.66|0.5|0.66|3|0|648; (*GB) gi|225434476|ref|XP_002278184.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Vitis vinifera];; (*SWP) sp|Q9SS81|PP221_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1;; (*TAIR) AT3G09060.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2766367-2768430 REVERSE LENGTH=687;; (*ITAG) Solyc09g014210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5705197-5707260 transcript_region:SL2.40ch09:5705197..5707260+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7R1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029764g0009.1 protein AED:0.59 eAED:0.64 QI:36|0|0|0.33|1|1|3|0|48 NbS00014851g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0.75|1|0|0.5|4|400|186; (*GB) gi|88910037|gb|ABD57972.1| (e_value=9e-105) eukaryotic translation initiation factor 4E [Nicotiana benthamiana];; (*SWP) sp|P48599|IF4E1_ORYSJ (e_value=3e-70) Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1;; (*TAIR) AT4G18040.1 (e_value=4e-65) | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryotic translation initiation factor 4E | chr4:10016724-10018151 REVERSE LENGTH=235;; (*ITAG) Solyc03g005870.2.1 (e_value=4e-75) genomic_reference:SL2.40ch03 gene_region:590058-593520 transcript_region:SL2.40ch03:590058..593520+ go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- Q199B8_SOLLC); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00040867g0006.1 protein AED:0.14 eAED:0.14 QI:273|0.83|0.78|0.94|0.88|0.89|19|0|1509; (*GB) gi|356557237|ref|XP_003546924.1| (e_value=0.0) PREDICTED: pre-mRNA-processing-splicing factor 8-like [Glycine max];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=0.0) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=0.0) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00053801g0008.1 protein AED:0.28 eAED:0.28 QI:166|0.71|0.75|1|0|0|8|281|381; (*GB) gi|113205141|gb|AAT40499.2| (e_value=4e-82) Ulp1 protease family protein, putative [Solanum demissum];; (*SWP) sp|Q8L7S0|ULP2B_ARATH (e_value=7e-12) Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3;; (*TAIR) AT3G48480.1 (e_value=2e-59) | Symbols: | Cysteine proteinases superfamily protein | chr3:17957326-17959062 REVERSE LENGTH=298;; (*ITAG) Solyc00g007260.2.1 (e_value=2e-173) genomic_reference:SL2.40ch00 gene_region:6896013-6900521 transcript_region:SL2.40ch00:6896013..6900521+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease 7 (AHRD V1 *-*- SENP7_HUMAN); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00053801g0009.1 protein AED:0.40 eAED:0.41 QI:0|0.71|0.62|1|0.71|0.87|8|0|201; (*GB) gi|356559971|ref|XP_003548269.1| (e_value=9e-128) PREDICTED: eukaryotic translation initiation factor 6-2-like isoform 1 [Glycine max];; (*SWP) sp|Q9M060|IF62_ARATH (e_value=8e-124) Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1;; (*TAIR) AT3G55620.1 (e_value=6e-125) | Symbols: emb1624 | Translation initiation factor IF6 | chr3:20634581-20636312 FORWARD LENGTH=245;; (*ITAG) Solyc00g007270.2.1 (e_value=1e-132) genomic_reference:SL2.40ch00 gene_region:6900991-6904901 transcript_region:SL2.40ch00:6900991..6904901- go_terms:GO:0005515,GO:0043023 functional_description:"Translation initiation factor (AHRD V1 ***- A6ZWQ9_YEAS7); contains Interpro domain(s) IPR002769 Translation initiation factor IF6 "; GO:0005515,GO:0043023 NbS00053674g0004.1 protein AED:0.01 eAED:0.01 QI:102|1|1|1|0.5|0.6|5|319|84; (*GB) gi|297745972|emb|CBI16028.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZW33|TIM10_ARATH (e_value=7e-38) Mitochondrial import inner membrane translocase subunit Tim10 OS=Arabidopsis thaliana GN=TIM10 PE=2 SV=1;; (*TAIR) AT2G29530.2 (e_value=5e-39) | Symbols: TIM10 | Tim10/DDP family zinc finger protein | chr2:12641026-12642243 REVERSE LENGTH=83;; (*ITAG) Solyc09g011760.2.1 (e_value=7e-41) genomic_reference:SL2.40ch09 gene_region:5050091-5055758 transcript_region:SL2.40ch09:5050091..5055758- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim10 (AHRD V1 ***- TIM10_ARATH); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00023911g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|0.66|1|1|3|0|411; (*GB) gi|356509090|ref|XP_003523285.1| (e_value=3e-115) PREDICTED: putative transcription elongation factor S-II-like [Glycine max];; (*SWP) sp|Q15560|TCEA2_HUMAN (e_value=7e-28) Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1;; (*TAIR) AT2G38560.1 (e_value=2e-77) | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378;; (*ITAG) Solyc03g095720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50344450-50348825 transcript_region:SL2.40ch03:50344450..50348825- go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 **** B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515,GO:0016944 NbS00003178g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.5|2|0|313; (*GB) gi|319718193|gb|ADV59398.1| (e_value=0.0) GAGA-binding transcriptional activator [Solanum tuberosum];; (*SWP) sp|Q8S8C6|BPC4_ARATH (e_value=4e-107) Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1;; (*TAIR) AT2G21240.2 (e_value=3e-108) | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine 4 | chr2:9101515-9102489 REVERSE LENGTH=296;; (*ITAG) Solyc01g110470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88934016-88935469 transcript_region:SL2.40ch01:88934016..88935469+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00024590g0008.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0.5|2|0|165; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-68) hypothetical protein [Nicotiana tabacum]; NbS00024590g0007.1 protein AED:0.26 eAED:0.26 QI:203|1|1|1|0.6|0.83|6|426|161; (*GB) gi|148841111|gb|ABR14728.1| (e_value=4e-99) ubiquitin conjugating enzyme [Gossypium hirsutum];; (*SWP) sp|Q9FMM0|UBC18_ARATH (e_value=4e-95) Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1;; (*TAIR) AT5G42990.1 (e_value=3e-96) | Symbols: UBC18 | ubiquitin-conjugating enzyme 18 | chr5:17244206-17245904 REVERSE LENGTH=161;; (*ITAG) Solyc04g080810.2.1 (e_value=3e-101) genomic_reference:SL2.40ch04 gene_region:62479013-62483424 transcript_region:SL2.40ch04:62479013..62483424- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00060070g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.42|1|0.5|0.71|7|0|385; (*GB) gi|224125744|ref|XP_002329707.1| (e_value=4e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=4e-79) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=4e-137) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc03g098030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53828514-53831008 transcript_region:SL2.40ch03:53828514..53831008+ go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00012593g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|638; (*GB) gi|224070782|ref|XP_002303234.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O54922|EXOC7_RAT (e_value=5e-18) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT1G72470.1 (e_value=0.0) | Symbols: ATEXO70D1, EXO70D1 | exocyst subunit exo70 family protein D1 | chr1:27283759-27285660 FORWARD LENGTH=633;; (*ITAG) Solyc06g062990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36145808-36147598 transcript_region:SL2.40ch06:36145808..36147598- go_terms:GO:0005515 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00010360g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|81301547|ref|YP_398844.1| (e_value=5e-49) ATP synthase CF1 alpha subunit [Nicotiana tomentosiformis];; (*SWP) sp|Q33C53|ATPA_NICTO (e_value=1e-50) ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=3e-48) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc06g072540.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41134119-41134445 transcript_region:SL2.40ch06:41134119..41134445+ functional_description:"ATP synthase subunit alpha chloroplastic (AHRD V1 ***- C6EN94_CARTI)"; NbS00010360g0002.1 protein AED:0.17 eAED:0.17 QI:711|0.91|0.92|1|0.66|0.53|13|531|510; (*GB) gi|255571057|ref|XP_002526479.1| (e_value=0.0) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=4e-32) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=4e-176) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc01g088800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75298298-75303659 transcript_region:SL2.40ch01:75298298..75303659+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C1GL98_PARBD); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00032191g0005.1 protein AED:0.09 eAED:0.09 QI:37|0.5|0.66|1|1|1|3|118|120; (*GB) gi|14423867|sp|Q9ST99.1|PROF2_TOBAC (e_value=2e-65) RecName: Full=Profilin-2;; (*SWP) sp|Q9ST99|PROF2_TOBAC (e_value=5e-67) Profilin-2 OS=Nicotiana tabacum GN=PRO2 PE=2 SV=1;; (*TAIR) AT2G19770.1 (e_value=1e-57) | Symbols: PRF5 | profilin 5 | chr2:8519885-8521119 REVERSE LENGTH=134;; (*ITAG) Solyc12g044630.1.1 (e_value=4e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45135507-45136150 transcript_region:SL2.40ch12:45135507..45136150+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q9SMC0_TOBAC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00008855g0008.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.66|0.5|0.33|3|0|508; (*GB) gi|356566543|ref|XP_003551490.1| (e_value=3e-163) PREDICTED: uncharacterized protein LOC100813750 [Glycine max];; (*TAIR) AT2G37730.1 (e_value=7e-165) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00014745g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|506; (*GB) gi|225430658|ref|XP_002268375.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Vitis vinifera];; (*SWP) sp|Q94JX6|PP391_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2;; (*TAIR) AT5G18390.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:6090954-6092333 FORWARD LENGTH=459;; (*ITAG) Solyc09g097840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67113261-67114673 transcript_region:SL2.40ch09:67113261..67114673+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LXU6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014745g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|791; (*GB) gi|359477040|ref|XP_002275651.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Vitis vinifera];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=2e-139) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=5e-118) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc11g005630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:483096-485429 transcript_region:SL2.40ch11:483096..485429+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00014745g0012.1 protein AED:0.45 eAED:0.46 QI:0|1|0.5|1|0|0|2|0|95; (*GB) gi|170333|gb|AAA34117.1| (e_value=1e-43) mRNA inducible by salicylic acid or by TMV during systemic acquired resistance response' [Nicotiana tabacum]; NbS00014745g0002.1 protein AED:0.39 eAED:1.00 QI:0|0|0|1|1|1|2|0|233; (*ITAG) Solyc09g042750.2.1 (e_value=1e-12) genomic_reference:SL2.40ch09 gene_region:29845223-29851412 transcript_region:SL2.40ch09:29845223..29851412- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE)"; GO:0016291 NbS00022788g0006.1 protein AED:0.20 eAED:0.20 QI:244|1|0.87|1|0.85|0.75|8|0|708; (*GB) gi|255555687|ref|XP_002518879.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=1e-45) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT5G24320.1 (e_value=6e-167) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc08g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62717433-62721756 transcript_region:SL2.40ch08:62717433..62721756- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00022788g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0|1|0.5|0|3|0|310; (*GB) gi|255555689|ref|XP_002518880.1| (e_value=4e-58) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9ZPY0|DOF25_ARATH (e_value=4e-33) Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3;; (*TAIR) AT3G61850.4 (e_value=2e-35) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=324;; (*ITAG) Solyc08g082910.1.1 (e_value=3e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62732664-62734361 transcript_region:SL2.40ch08:62732664..62734361+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 ***- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00018440g0004.1 protein AED:0.27 eAED:0.27 QI:197|1|1|1|0|1|2|187|207; (*ITAG) Solyc05g008140.2.1 (e_value=8e-63) genomic_reference:SL2.40ch05 gene_region:2536494-2539869 transcript_region:SL2.40ch05:2536494..2539869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006311 Twin-arginine translocation pathway signal "; NbS00020337g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|1|1|3|0|337; (*GB) gi|255565081|ref|XP_002523533.1| (e_value=9e-96) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g068350.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32896287-32897225 transcript_region:SL2.40ch02:32896287..32897225- go_terms:GO:0033014 functional_description:"Uroporphyrinogen-III synthase (AHRD V1 ***- Q3M8K2_ANAVT); contains Interpro domain(s) IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase "; GO:0033014 NbS00020337g0011.1 protein AED:0.12 eAED:0.12 QI:538|1|1|1|0.5|0.66|3|568|174; (*GB) gi|296088490|emb|CBI37481.3| (e_value=2e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54847|ACCO3_CUCME (e_value=2e-22) 1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1;; (*TAIR) AT1G14130.1 (e_value=5e-76) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:4836041-4837040 REVERSE LENGTH=308;; (*ITAG) Solyc02g068320.2.1 (e_value=3e-119) genomic_reference:SL2.40ch02 gene_region:32870930-32873310 transcript_region:SL2.40ch02:32870930..32873310- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **-- B9GJL0_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00020337g0018.1 protein AED:0.19 eAED:0.19 QI:0|0.89|0.9|1|0.94|0.95|20|0|1134; (*GB) gi|1491931|gb|AAC49393.1| (e_value=0.0) kinesin-like protein [Nicotiana tabacum];; (*SWP) sp|Q7XPJ0|KCBP_ORYSJ (e_value=0.0) Kinesin-like calmodulin-binding protein homolog OS=Oryza sativa subsp. japonica GN=Os04g0666900 PE=2 SV=1;; (*TAIR) AT5G65930.3 (e_value=0.0) | Symbols: ZWI | kinesin-like calmodulin-binding protein (ZWICHEL) | chr5:26370369-26376394 REVERSE LENGTH=1266;; (*ITAG) Solyc02g068340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32877427-32887048 transcript_region:SL2.40ch02:32877427..32887048- go_terms:GO:0005516 functional_description:"Kinesin-like calmodulin binding protein (AHRD V1 **** Q7Y1U0_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005516 NbS00020337g0017.1 protein AED:0.25 eAED:0.28 QI:0|0.75|0.4|1|1|1|5|0|347; (*GB) gi|224117680|ref|XP_002317641.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54DX7|TAZ1_DICDI (e_value=3e-31) Putative lysophosphatidylcholine acyltransferase OS=Dictyostelium discoideum GN=taz PE=3 SV=1;; (*TAIR) AT1G78690.1 (e_value=1e-89) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:29597002-29598409 FORWARD LENGTH=284;; (*ITAG) Solyc02g068360.2.1 (e_value=1e-130) genomic_reference:SL2.40ch02 gene_region:32897572-32901128 transcript_region:SL2.40ch02:32897572..32901128- go_terms:GO:0047184 functional_description:"Tafazzin (AHRD V1 ***- C1BN32_9MAXI); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0047184 NbS00020337g0016.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|688; (*GB) gi|5545339|dbj|BAA82556.1| (e_value=0.0) lectin-like protein kinase [Populus nigra];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=5e-140) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=4e-141) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc02g068300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32860048-32864698 transcript_region:SL2.40ch02:32860048..32864698+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00029674g0003.1 protein AED:0.01 eAED:0.01 QI:278|1|1|1|1|1|2|164|310; (*GB) gi|255561632|ref|XP_002521826.1| (e_value=2e-80) axonemal dynein light chain, putative [Ricinus communis];; (*SWP) sp|Q86A88|DYL_DICDI (e_value=2e-18) Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1;; (*TAIR) AT5G20110.1 (e_value=8e-42) | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209;; (*ITAG) Solyc06g071180.2.1 (e_value=1e-126) genomic_reference:SL2.40ch06 gene_region:40159376-40160978 transcript_region:SL2.40ch06:40159376..40160978+ go_terms:GO:0005875,GO:0016021 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 *-*- Q7RN10_PLAYO); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0005875,GO:0016021 NbS00049079g0006.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|2|498|389; (*GB) gi|225453144|ref|XP_002273909.1| (e_value=2e-169) PREDICTED: U-box domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=6e-27) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G03440.1 (e_value=7e-139) | Symbols: | ARM repeat superfamily protein | chr3:815709-818568 FORWARD LENGTH=408;; (*ITAG) Solyc02g091430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47295745-47298947 transcript_region:SL2.40ch02:47295745..47298947- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L0H5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00049079g0004.1 protein AED:0.43 eAED:1.00 QI:0|0|0|1|1|1|2|0|68 NbS00049079g0008.1 protein AED:0.29 eAED:0.66 QI:0|0|0|1|0|0|2|0|198; (*ITAG) Solyc01g056230.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00018938g0001.1 protein AED:0.34 eAED:0.36 QI:0|0|0|0.75|1|1|4|0|184; (*ITAG) Solyc06g073170.1.1 (e_value=7e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41474235-41474741 transcript_region:SL2.40ch06:41474235..41474741+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019831g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.57|0.25|1|0.28|0.12|8|0|527; (*GB) gi|224064945|ref|XP_002301611.1| (e_value=4e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69KJ0|RTL3_ORYSJ (e_value=3e-63) Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1;; (*TAIR) AT4G15417.1 (e_value=2e-61) | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:8821759-8822991 FORWARD LENGTH=264;; (*ITAG) Solyc05g041920.2.1 (e_value=1e-107) genomic_reference:SL2.40ch05 gene_region:53383703-53387183 transcript_region:SL2.40ch05:53383703..53387183- go_terms:GO:0005515 functional_description:"Ribonuclease 3 (AHRD V1 ***- C3FP31_BACTB); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00005684g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.6|1|1|0.6|5|0|270; (*GB) gi|255585928|ref|XP_002533636.1| (e_value=5e-172) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8W4I7|CDPKD_ARATH (e_value=4e-169) Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2;; (*TAIR) AT3G51850.1 (e_value=3e-170) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528;; (*ITAG) Solyc09g005550.2.1 (e_value=3e-179) genomic_reference:SL2.40ch09 gene_region:369215-377428 transcript_region:SL2.40ch09:369215..377428- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 13 (AHRD V1 **** B9IGA3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00005684g0004.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|123; (*GB) gi|93004717|gb|ABD93550.2| (e_value=3e-66) inward rectifier potassium channel-like protein [Nicotiana tomentosiformis];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-43) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-44) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=5e-57) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00006966g0011.1 protein AED:0.11 eAED:0.11 QI:216|0.87|0.77|1|0.62|0.55|9|189|398; (*GB) gi|255577689|ref|XP_002529721.1| (e_value=1e-168) bromodomain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q84XV2|GTE1_ARATH (e_value=3e-118) Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1;; (*TAIR) AT2G34900.1 (e_value=2e-119) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386;; (*ITAG) Solyc09g015660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:10656313-10667870 transcript_region:SL2.40ch09:10656313..10667870+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- B0S7P2_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00006966g0007.1 protein AED:0.14 eAED:0.24 QI:0|0|0|1|1|1|3|0|220; (*GB) gi|83283983|gb|ABC01899.1| (e_value=9e-124) glycoprotein endopeptidase-like protein [Solanum tuberosum];; (*SWP) sp|Q55GU1|OSGEP_DICDI (e_value=4e-93) Probable tRNA threonylcarbamoyladenosine biosynthesis protein osgep OS=Dictyostelium discoideum GN=osgep PE=3 SV=1;; (*TAIR) AT4G22720.2 (e_value=2e-122) | Symbols: | Actin-like ATPase superfamily protein | chr4:11937467-11938717 FORWARD LENGTH=353;; (*ITAG) Solyc02g068750.1.1 (e_value=4e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33256570-33257610 transcript_region:SL2.40ch02:33256570..33257610+ go_terms:GO:0005515 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6TBH3_MAIZE); contains Interpro domain(s) IPR009180 Peptidase M22, O-sialoglycoprotein endopeptidase "; GO:0005515 NbS00018906g0007.1 protein AED:0.01 eAED:0.01 QI:111|0.5|0.66|1|0|0.33|3|315|70 NbS00018906g0006.1 protein AED:0.19 eAED:0.19 QI:187|1|0.75|1|1|1|4|0|409; (*GB) gi|225448225|ref|XP_002269948.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100243925 [Vitis vinifera];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-45) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT1G11430.1 (e_value=3e-46) | Symbols: | plastid developmental protein DAG, putative | chr1:3847273-3848938 FORWARD LENGTH=232;; (*ITAG) Solyc02g079210.2.1 (e_value=7e-84) genomic_reference:SL2.40ch02 gene_region:38397630-38401238 transcript_region:SL2.40ch02:38397630..38401238- functional_description:"DAG protein (AHRD V1 *-*- B6SJX7_MAIZE)"; NbS00007340g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|255568912|ref|XP_002525426.1| (e_value=7e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G18150.1 (e_value=4e-26) | Symbols: | Methyltransferase-related protein | chr5:6000014-6000331 REVERSE LENGTH=76;; (*ITAG) Solyc06g075190.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:43056877-43057164 transcript_region:SL2.40ch06:43056877..43057164+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015044g0008.1 protein AED:0.00 eAED:0.00 QI:109|1|1|1|0.83|0.85|7|653|363; (*GB) gi|255545319|ref|XP_002513720.1| (e_value=4e-109) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G22120.1 (e_value=1e-101) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7334612-7336755 REVERSE LENGTH=383;; (*ITAG) Solyc06g074130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42238508-42244087 transcript_region:SL2.40ch06:42238508..42244087+ functional_description:"Growth inhibition and differentiation-related protein 88 (AHRD V1 ***- B6TKU0_MAIZE)"; NbS00015044g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.4|1|0.75|0.6|5|0|677; (*GB) gi|350538443|ref|NP_001234599.1| (e_value=0.0) bell-like homeodomain protein 2 [Solanum lycopersicum];; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=7e-105) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=5e-106) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc06g074120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42231957-42236664 transcript_region:SL2.40ch06:42231957..42236664+ go_terms:GO:0046982,GO:0042803 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0046982,GO:0042803 NbS00015044g0007.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|208; (*GB) gi|111073727|dbj|BAF02552.1| (e_value=6e-75) hypothetical protein [Nicotiana benthamiana];; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=1e-38) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=1e-39) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc06g074140.1.1 (e_value=8e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42247306-42248568 transcript_region:SL2.40ch06:42247306..42248568+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00039198g0015.1 protein AED:0.09 eAED:0.09 QI:243|1|0.93|1|0.78|0.93|15|337|914; (*GB) gi|359491974|ref|XP_002283285.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252311 [Vitis vinifera];; (*TAIR) AT5G43130.1 (e_value=2e-180) | Symbols: TAF4, TAF4B | TBP-associated factor 4 | chr5:17315608-17321144 REVERSE LENGTH=823;; (*ITAG) Solyc04g078050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60491106-60503545 transcript_region:SL2.40ch04:60491106..60503545+ go_terms:GO:0005669 functional_description:"Transcription initiation factor (AHRD V1 ***- D3YBD2_TRIRP); contains Interpro domain(s) IPR007900 Transcription initiation factor TFIID component TAF4 "; GO:0005669 NbS00039198g0008.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|1|1|2|0|129; (*GB) gi|255538972|ref|XP_002510551.1| (e_value=1e-48) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G75810.1 (e_value=6e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28461747-28462124 FORWARD LENGTH=125;; (*ITAG) Solyc04g078060.1.1 (e_value=3e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60505619-60505969 transcript_region:SL2.40ch04:60505619..60505969+ functional_description:"Small hydrophobic protein (AHRD V1 *-*- Q9ZQY8_ARATH)"; NbS00026625g0015.1 protein AED:0.06 eAED:0.08 QI:71|0.5|0.33|1|0.5|0.33|3|0|513; (*GB) gi|147882993|gb|ABQ51813.1| (e_value=0.0) RAN GTPase-activating protein 2 [Nicotiana benthamiana];; (*SWP) sp|Q9M651|RAGP2_ARATH (e_value=0.0) RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2;; (*TAIR) AT5G19320.1 (e_value=0.0) | Symbols: RANGAP2 | RAN GTPase activating protein 2 | chr5:6505310-6506947 REVERSE LENGTH=545;; (*ITAG) Solyc01g079680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71306007-71308978 transcript_region:SL2.40ch01:71306007..71308978+ go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase activating protein (Fragment) (AHRD V1 **-* A7M8K5_NICBE); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; GO:0005515,GO:0005098 NbS00026625g0017.1 protein AED:0.06 eAED:0.06 QI:59|0|0.5|1|0|0|2|0|133; (*GB) gi|224111230|ref|XP_002315787.1| (e_value=4e-14) chromatin remodeling complex subunit [Populus trichocarpa];; (*TAIR) AT3G06010.1 (e_value=2e-14) | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102;; (*ITAG) Solyc01g079700.2.1 (e_value=5e-38) genomic_reference:SL2.40ch01 gene_region:71323745-71325167 transcript_region:SL2.40ch01:71323745..71325167- functional_description:"Chromatin remodeling complex subunit (AHRD V1 ***- B9HJV0_POPTR)"; NbS00026625g0013.1 protein AED:0.08 eAED:0.08 QI:0|0.85|0.75|1|0.57|0.62|8|369|970; (*GB) gi|359477501|ref|XP_002281240.2| (e_value=0.0) PREDICTED: transcription regulatory protein SNF2-like [Vitis vinifera];; (*SWP) sp|P22082|SNF2_YEAST (e_value=0.0) Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1;; (*TAIR) AT3G06010.1 (e_value=0.0) | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102;; (*ITAG) Solyc01g079690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71309355-71316439 transcript_region:SL2.40ch01:71309355..71316439- go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase Snf22 (AHRD V1 *--* B6K540_SCHJY); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00013109g0003.1 protein AED:0.03 eAED:0.03 QI:66|1|1|1|1|1|2|77|463; (*GB) gi|209954711|dbj|BAG80546.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|O48676|U74B1_ARATH (e_value=1e-162) UDP-glycosyltransferase 74B1 OS=Arabidopsis thaliana GN=UGT74B1 PE=1 SV=1;; (*TAIR) AT1G24100.1 (e_value=9e-164) | Symbols: UGT74B1 | UDP-glucosyl transferase 74B1 | chr1:8525547-8527010 REVERSE LENGTH=460;; (*ITAG) Solyc08g006350.2.1 (e_value=5e-159) genomic_reference:SL2.40ch08 gene_region:993075-994951 transcript_region:SL2.40ch08:993075..994951- go_terms:GO:0080002 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 **** B6EWX8_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00029103g0001.1 protein AED:0.23 eAED:0.24 QI:0|0.85|0.75|1|1|1|8|0|452; (*GB) gi|365222870|gb|AEW69787.1| (e_value=0.0) Hop-interacting protein THI015 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=2e-177) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=1e-178) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc09g010690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4016066-4020196 transcript_region:SL2.40ch09:4016066..4020196+ go_terms:GO:0005200 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005200 NbS00029103g0006.1 protein AED:0.33 eAED:0.33 QI:151|0.5|0.33|1|0|0|3|0|134; (*ITAG) Solyc09g010700.2.1 (e_value=1e-15) genomic_reference:SL2.40ch09 gene_region:4021734-4024116 transcript_region:SL2.40ch09:4021734..4024116- functional_description:"CM0545.320.nc protein (AHRD V1 ***- B0BLB0_LOTJA)"; NbS00016780g0003.1 protein AED:0.32 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|135; (*GB) gi|224054760|ref|XP_002298360.1| (e_value=7e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g066000.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:48700698-48701285 transcript_region:SL2.40ch11:48700698..48701285+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010889g0002.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|0|0|2|0|84; (*GB) gi|225445164|ref|XP_002284090.1| (e_value=5e-14) PREDICTED: uncharacterized protein LOC100268083 [Vitis vinifera];; (*ITAG) Solyc12g007240.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1666419-1669119 transcript_region:SL2.40ch12:1666419..1669119+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035466g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|0.5|2|0|282; (*GB) gi|255570037|ref|XP_002525981.1| (e_value=2e-96) DUF26 domain-containing protein 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9ZU94|CRR12_ARATH (e_value=2e-83) Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2;; (*TAIR) AT2G01660.1 (e_value=1e-84) | Symbols: PDLP6 | plasmodesmata-located protein 6 | chr2:290973-292496 REVERSE LENGTH=288;; (*ITAG) Solyc04g007950.2.1 (e_value=7e-147) genomic_reference:SL2.40ch04 gene_region:1595372-1599582 transcript_region:SL2.40ch04:1595372..1599582- go_terms:GO:0005515 functional_description:"Cysteine-rich repeat secretory protein 12 (AHRD V1 ***- CRR12_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0005515 NbS00052455g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|114 NbS00052455g0004.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|111 NbS00003181g0004.1 protein AED:0.35 eAED:0.35 QI:204|1|1|1|1|1|5|0|221; (*GB) gi|12585492|sp|Q9SWE7.1|VATE_CITLI (e_value=5e-113) RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E;; (*SWP) sp|Q9SWE7|VATE_CITLI (e_value=1e-114) V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1;; (*TAIR) AT4G11150.1 (e_value=2e-101) | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP synthase subunit E1 | chr4:6800091-6801696 FORWARD LENGTH=230;; (*ITAG) Solyc12g056110.1.1 (e_value=1e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47434718-47440701 transcript_region:SL2.40ch12:47434718..47440701+ go_terms:GO:0033178 functional_description:"V-type proton ATPase subunit E (AHRD V1 ***- D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0033178 NbC25074434g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|0.66|0.75|4|0|137; (*GB) gi|162955767|gb|ABY25273.1| (e_value=9e-97) putrescine N-methyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9SEH4|PMT4_TOBAC (e_value=7e-98) Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1;; (*TAIR) AT1G23820.1 (e_value=5e-74) | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378;; (*ITAG) Solyc08g014310.2.1 (e_value=7e-94) genomic_reference:SL2.40ch08 gene_region:4025809-4029506 transcript_region:SL2.40ch08:4025809..4029506+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A7DY57_COCOF); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00009130g0006.1 protein AED:0.51 eAED:0.51 QI:45|0.66|0.25|0.75|1|1|4|0|94; (*GB) gi|15225459|ref|NP_182061.1| (e_value=7e-27) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT2G45360.1 (e_value=2e-29) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc10g018200.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7149308-7150820 transcript_region:SL2.40ch10:7149308..7150820- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00009130g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.66|3|0|212; (*GB) gi|255537091|ref|XP_002509612.1| (e_value=4e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45360.1 (e_value=6e-53) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc10g018200.1.1 (e_value=3e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7149308-7150820 transcript_region:SL2.40ch10:7149308..7150820- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00009130g0009.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|255537091|ref|XP_002509612.1| (e_value=4e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60780.1 (e_value=7e-20) | Symbols: | Protein of unknown function (DUF1442) | chr3:22462695-22463630 FORWARD LENGTH=218;; (*ITAG) Solyc10g018200.1.1 (e_value=5e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7149308-7150820 transcript_region:SL2.40ch10:7149308..7150820- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00049384g0003.1 protein AED:0.16 eAED:0.16 QI:312|0.87|0.88|1|0.75|0.77|9|398|346; (*GB) gi|255546417|ref|XP_002514268.1| (e_value=8e-141) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8S3D1|BH068_ARATH (e_value=3e-91) Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2;; (*TAIR) AT4G29100.1 (e_value=3e-92) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341140-14344575 FORWARD LENGTH=407;; (*ITAG) Solyc07g020960.2.1 (e_value=7e-168) genomic_reference:SL2.40ch07 gene_region:15040089-15044408 transcript_region:SL2.40ch07:15040089..15044408+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00039046g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.83|0.57|1|1|1|7|255|571; (*GB) gi|225456787|ref|XP_002277300.1| (e_value=2e-126) PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STM4|C3H43_ARATH (e_value=9e-99) Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1;; (*TAIR) AT3G48440.1 (e_value=7e-100) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr3:17941402-17943576 FORWARD LENGTH=448;; (*ITAG) Solyc06g071860.2.1 (e_value=2e-157) genomic_reference:SL2.40ch06 gene_region:40662265-40667701 transcript_region:SL2.40ch06:40662265..40667701+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 67 (AHRD V1 *-*- C3H67_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00039046g0007.1 protein AED:0.24 eAED:0.24 QI:245|1|0.9|1|1|1|10|0|675; (*GB) gi|225456798|ref|XP_002275611.1| (e_value=0.0) PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Vitis vinifera];; (*TAIR) AT5G63200.1 (e_value=0.0) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr5:25349043-25352899 FORWARD LENGTH=649;; (*ITAG) Solyc06g071850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40652750-40660166 transcript_region:SL2.40ch06:40652750..40660166+ go_terms:GO:0005488 functional_description:"TPR repeat (AHRD V1 ***- Q469C8_METBF); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbC25765836g0001.1 protein AED:0.06 eAED:0.16 QI:0|0|0|1|0|0|3|0|256; (*GB) gi|255549706|ref|XP_002515904.1| (e_value=2e-50) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|O65924|Y2921_ARATH (e_value=4e-51) Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=2 SV=1;; (*TAIR) AT2G19210.1 (e_value=3e-52) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr2:8335639-8339307 REVERSE LENGTH=881;; (*ITAG) Solyc06g062450.2.1 (e_value=4e-89) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00032004g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.75|0|0|4|0|404; (*GB) gi|255561552|ref|XP_002521786.1| (e_value=6e-41) Disease resistance protein RPP13, putative [Ricinus communis];; (*SWP) sp|Q9FJB5|RP8L3_ARATH (e_value=4e-25) Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1;; (*TAIR) AT5G35450.1 (e_value=3e-26) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc12g096920.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63982696-63986146 transcript_region:SL2.40ch12:63982696..63986146+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00035571g0005.1 protein AED:0.12 eAED:0.13 QI:427|0.36|0.33|1|0.63|0.58|12|0|618; (*GB) gi|255565913|ref|XP_002523945.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q5CCK4|VAL2_ARATH (e_value=0.0) B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1;; (*TAIR) AT4G32010.1 (e_value=0.0) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc06g082520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44592516-44602333 transcript_region:SL2.40ch06:44592516..44602333- go_terms:GO:0005515,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0016564 NbS00036375g0004.1 protein AED:0.10 eAED:0.14 QI:78|0.66|0.25|1|0.33|0.5|4|0|649; (*GB) gi|359474075|ref|XP_002279230.2| (e_value=0.0) PREDICTED: homeobox protein BEL1 homolog [Vitis vinifera];; (*SWP) sp|Q38897|BEL1_ARATH (e_value=8e-120) Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2;; (*TAIR) AT5G41410.1 (e_value=6e-121) | Symbols: BEL1 | POX (plant homeobox) family protein | chr5:16580424-16583770 FORWARD LENGTH=611;; (*ITAG) Solyc08g081400.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61634552-61638185 transcript_region:SL2.40ch08:61634552..61638185+ go_terms:GO:0005515,GO:0003677 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 *--- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005515,GO:0003677 NbS00011027g0011.1 protein AED:0.07 eAED:0.07 QI:123|1|0.85|1|0.66|1|7|321|209; (*GB) gi|224104269|ref|XP_002313378.1| (e_value=1e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=2e-110) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT2G29960.1 (e_value=1e-111) | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201;; (*ITAG) Solyc06g076970.2.1 (e_value=3e-120) genomic_reference:SL2.40ch06 gene_region:44223388-44227200 transcript_region:SL2.40ch06:44223388..44227200- go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** B2BF99_TOBAC); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00011027g0010.1 protein AED:0.08 eAED:0.08 QI:230|0.88|0.88|1|0.70|0.66|18|857|1832; (*GB) gi|359478506|ref|XP_003632124.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase listerin-like [Vitis vinifera];; (*SWP) sp|Q9FGI1|LTN1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=1;; (*TAIR) AT5G58410.1 (e_value=0.0) | Symbols: | HEAT/U-box domain-containing protein | chr5:23609663-23617343 FORWARD LENGTH=1873;; (*ITAG) Solyc09g055260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:33958452-33973931 transcript_region:SL2.40ch09:33958452..33973931- go_terms:GO:0008270,GO:0005488 functional_description:"RING zinc finger-containing protein (AHRD V1 *--- D3BGF4_POLPA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00030726g0005.1 protein AED:0.12 eAED:0.12 QI:254|1|1|1|1|1|11|256|406; (*GB) gi|359483871|ref|XP_002276286.2| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera];; (*SWP) sp|A0JMA9|KATL2_XENTR (e_value=3e-121) Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1;; (*TAIR) AT2G34560.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14560266-14562695 FORWARD LENGTH=393;; (*ITAG) Solyc02g070440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34752452-34759726 transcript_region:SL2.40ch02:34752452..34759726+ go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit A (AHRD V1 **-* D0P3C9_PHYIN); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00052751g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|356505262|ref|XP_003521411.1| (e_value=6e-23) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Glycine max];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=5e-19) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=4e-20) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00052751g0007.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.33|0|0.33|3|0|82; (*GB) gi|356505262|ref|XP_003521411.1| (e_value=7e-18) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570-like [Glycine max];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=3e-14) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=2e-15) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=7e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00052751g0006.1 protein AED:0.26 eAED:0.27 QI:360|0.94|0.94|1|0.88|0.77|18|442|624; (*GB) gi|350537695|ref|NP_001234049.1| (e_value=0.0) cytochrome P450-type monooxygenase 97A29 [Solanum lycopersicum];; (*SWP) sp|Q93VK5|LUT5_ARATH (e_value=0.0) Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana GN=CYP97A3 PE=1 SV=1;; (*TAIR) AT1G31800.1 (e_value=0.0) | Symbols: CYP97A3, LUT5 | cytochrome P450, family 97, subfamily A, polypeptide 3 | chr1:11396440-11399470 FORWARD LENGTH=595;; (*ITAG) Solyc04g051190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49193942-49213054 transcript_region:SL2.40ch04:49193942..49213054- go_terms:GO:0019825,GO:0010291 functional_description:"Cytochrome P450"; GO:0019825,GO:0010291 NbS00008771g0002.1 protein AED:0.17 eAED:0.17 QI:226|1|1|1|1|1|2|334|136; (*GB) gi|111183167|gb|ABH07904.1| (e_value=2e-65) squamosa promoter binding-like protein [Solanum lycopersicum];; (*SWP) sp|Q38741|SBP1_ANTMA (e_value=2e-48) Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1;; (*TAIR) AT2G33810.1 (e_value=2e-41) | Symbols: SPL3 | squamosa promoter binding protein-like 3 | chr2:14305342-14305828 FORWARD LENGTH=131;; (*ITAG) Solyc02g077920.2.1 (e_value=4e-68) genomic_reference:SL2.40ch02 gene_region:37320931-37323107 transcript_region:SL2.40ch02:37320931..37323107- go_terms:GO:0003700 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q0PY35_SOLLC); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00008771g0005.1 protein AED:0.52 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|65 NbS00019956g0101.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|170 NbS00062231g0007.1 protein AED:0.05 eAED:0.05 QI:514|0.87|0.77|1|0.62|0.55|9|118|435; (*GB) gi|2853041|emb|CAA63777.1| (e_value=0.0) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase [Solanum tuberosum];; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=3e-169) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2 PE=1 SV=1;; (*TAIR) AT3G08510.2 (e_value=2e-170) | Symbols: ATPLC2, PLC2 | phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=581;; (*ITAG) Solyc10g076710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58968235-58971638 transcript_region:SL2.40ch10:58968235..58971638- go_terms:GO:0023034,GO:0006629,GO:0005509 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region "; GO:0023034,GO:0006629,GO:0005509 NbS00062231g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|219; (*GB) gi|225439433|ref|XP_002265850.1| (e_value=6e-94) PREDICTED: uncharacterized protein LOC100252319 [Vitis vinifera];; (*SWP) sp|Q9SR92|STR10_ARATH (e_value=9e-79) Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1;; (*TAIR) AT3G08920.1 (e_value=7e-80) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:2712274-2713117 FORWARD LENGTH=214;; (*ITAG) Solyc10g076700.1.1 (e_value=1e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58965981-58967370 transcript_region:SL2.40ch10:58965981..58967370+ functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00062231g0008.1 protein AED:0.56 eAED:0.56 QI:68|0|0|0.5|0|0|2|0|68; (*ITAG) Solyc10g076700.1.1 (e_value=5e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58965981-58967370 transcript_region:SL2.40ch10:58965981..58967370+ functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00008719g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|229; (*GB) gi|225447695|ref|XP_002276962.1| (e_value=2e-57) PREDICTED: transcription repressor MYB4 [Vitis vinifera];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=8e-51) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT1G16490.1 (e_value=1e-53) | Symbols: ATMYB58, MYB58 | myb domain protein 58 | chr1:5629859-5630844 REVERSE LENGTH=274;; (*ITAG) Solyc07g054960.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60445125-60446521 transcript_region:SL2.40ch07:60445125..60446521- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00028543g0015.1 protein AED:0.02 eAED:0.05 QI:0|1|0|1|0|0|2|0|77; (*ITAG) Solyc03g097040.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:52843543-52843913 transcript_region:SL2.40ch03:52843543..52843913+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028543g0016.1 protein AED:0.33 eAED:0.44 QI:2|0|0|1|0.5|0|3|0|190; (*ITAG) Solyc10g049530.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00028543g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|1|1|3|0|1139; (*GB) gi|356497399|ref|XP_003517548.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D3-like [Glycine max];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0.0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=0.0) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc03g097050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52847305-52851906 transcript_region:SL2.40ch03:52847305..52851906- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00028543g0014.1 protein AED:0.18 eAED:0.18 QI:169|1|1|1|1|1|9|343|505; (*GB) gi|357474287|ref|XP_003607428.1| (e_value=0.0) Exostosin family protein-like protein [Medicago truncatula];; (*SWP) sp|Q6NMM8|F8H_ARATH (e_value=9e-25) Probable glucuronoxylan glucuronosyltransferase F8H OS=Arabidopsis thaliana GN=F8H PE=2 SV=1;; (*TAIR) AT5G16890.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr5:5551664-5554741 FORWARD LENGTH=511;; (*ITAG) Solyc03g097060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52856051-52862181 transcript_region:SL2.40ch03:52856051..52862181- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 **-- D7M892_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00048043g0004.1 protein AED:0.22 eAED:0.28 QI:313|1|0.75|1|1|1|4|0|297; (*GB) gi|115765|sp|P10708.1|CB12_SOLLC (e_value=7e-158) RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor;; (*SWP) sp|P10708|CB12_SOLLC (e_value=2e-159) Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1;; (*TAIR) AT3G61470.1 (e_value=3e-139) | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257;; (*ITAG) Solyc10g006230.2.1 (e_value=1e-160) genomic_reference:SL2.40ch10 gene_region:920027-923670 transcript_region:SL2.40ch10:920027..923670+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 7, chloroplastic (AHRD V1 ***- CB12_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00003288g0009.1 protein AED:0.33 eAED:0.55 QI:88|0|0|1|0.33|0.25|4|0|297; (*GB) gi|57013964|ref|YP_173436.1| (e_value=3e-29) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00041798g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|155; (*GB) gi|353703788|ref|NP_001238798.1| (e_value=2e-64) late embryogenesis abundant protein [Solanum lycopersicum];; (*SWP) sp|P83442|LEAD3_DAUCA (e_value=6e-37) Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G52690.2 (e_value=1e-32) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr1:19619842-19620589 FORWARD LENGTH=169;; (*ITAG) Solyc03g116390.2.1 (e_value=3e-67) genomic_reference:SL2.40ch03 gene_region:59910675-59911543 transcript_region:SL2.40ch03:59910675..59911543- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- Q2QKE8_CATRO)"; NbS00041798g0002.1 protein AED:0.26 eAED:0.38 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|255572411|ref|XP_002527143.1| (e_value=2e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17230.1 (e_value=3e-26) | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494892-7495983 REVERSE LENGTH=363;; (*ITAG) Solyc10g074540.1.1 (e_value=6e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57429414-57430448 transcript_region:SL2.40ch10:57429414..57430448- functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP3_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00041798g0001.1 protein AED:0.02 eAED:0.02 QI:168|0.5|0.66|1|0.5|1|3|171|155; (*ITAG) Solyc03g116400.2.1 (e_value=3e-29) genomic_reference:SL2.40ch03 gene_region:59912099-59913094 transcript_region:SL2.40ch03:59912099..59913094+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041798g0011.1 protein AED:0.09 eAED:0.13 QI:76|1|0.88|1|0.87|0.88|9|398|500; (*GB) gi|297743397|emb|CBI36264.3| (e_value=6e-160) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15420.1 (e_value=2e-48) | Symbols: | CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278;; (*ITAG) Solyc03g116380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59902999-59910301 transcript_region:SL2.40ch03:59902999..59910301+ functional_description:"WD-40 repeat protein (AHRD V1 *-*- B2IUC6_NOSP7); contains Interpro domain(s) IPR012979 Protein of unknown function NUC189, C-terminal "; NbS00009643g0002.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|399; (*GB) gi|255561797|ref|XP_002521908.1| (e_value=7e-130) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9FRH3|CAP13_ARATH (e_value=4e-110) Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=2 SV=1;; (*TAIR) AT1G25240.1 (e_value=3e-111) | Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376;; (*ITAG) Solyc01g005070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:65457-66982 transcript_region:SL2.40ch01:65457..66982+ go_terms:GO:0005488 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TYB1_MAIZE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00009643g0001.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|68; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=1e-23) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012685g0003.1 protein AED:0.43 eAED:0.45 QI:0|0|0|0.5|1|1|4|0|94; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-19) hypothetical protein [Nicotiana tabacum]; NbS00012685g0001.1 protein AED:0.17 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|219; (*GB) gi|224079694|ref|XP_002305915.1| (e_value=2e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02700.1 (e_value=9e-54) | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252;; (*ITAG) Solyc02g081580.2.1 (e_value=4e-66) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00031640g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|0.66|3|469|728; (*GB) gi|359490807|ref|XP_002272450.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255603 [Vitis vinifera];; (*TAIR) AT5G53020.1 (e_value=2e-131) | Symbols: | Ribonuclease P protein subunit P38-related | chr5:21499899-21502235 FORWARD LENGTH=720;; (*ITAG) Solyc03g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46427167-46430205 transcript_region:SL2.40ch03:46427167..46430205- functional_description:"Unknown Protein (AHRD V1)"; NbS00031640g0002.1 protein AED:0.34 eAED:0.42 QI:0|0|0|0.5|1|1|4|0|156; (*GB) gi|255551209|ref|XP_002516651.1| (e_value=3e-39) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9LVU8|RKD4_ARATH (e_value=3e-28) Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1;; (*TAIR) AT5G53040.1 (e_value=2e-29) | Symbols: | RWP-RK domain-containing protein | chr5:21506967-21507948 REVERSE LENGTH=256;; (*ITAG) Solyc03g083040.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46419062-46421169 transcript_region:SL2.40ch03:46419062..46421169+ functional_description:"RWP-RK domain-containing transcription factor (AHRD V1 *-*- D8TJX2_VOLCA); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00027324g0014.1 protein AED:0.13 eAED:0.15 QI:0|1|0.5|1|0|0.5|2|0|154; (*GB) gi|359494441|ref|XP_002264049.2| (e_value=4e-83) PREDICTED: LOB domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q9SHE9|LBD4_ARATH (e_value=1e-70) LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1;; (*TAIR) AT1G31320.1 (e_value=1e-71) | Symbols: LBD4 | LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172;; (*ITAG) Solyc11g045530.1.1 (e_value=2e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:38110363-38113093 transcript_region:SL2.40ch11:38110363..38113093+ functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00027324g0015.1 protein AED:0.30 eAED:0.30 QI:771|1|1|1|0.5|0.42|7|176|316; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-32) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc09g059490.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00027324g0017.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|0.4|0.66|6|0|305; (*GB) gi|225242|prf||1211235CA (e_value=7e-25) ORF 1708;; (*SWP) sp|P09976|YCF2_TOBAC (e_value=3e-26) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=6e-25) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-26) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00007905g0009.1 protein AED:0.16 eAED:0.20 QI:12|0.21|0.2|0.93|0.71|0.6|15|795|1790; (*GB) gi|225427898|ref|XP_002276690.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248664 [Vitis vinifera];; (*TAIR) AT4G30150.1 (e_value=3e-140) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:14742452-14749764 FORWARD LENGTH=2009;; (*ITAG) Solyc10g054860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51490280-51501248 transcript_region:SL2.40ch10:51490280..51501248+ functional_description:"Chromosome 13 contig 1 DNA sequence (AHRD V1 *-*- Q00WQ5_OSTTA); contains Interpro domain(s) IPR018849 Nucleolar 27S pre-rRNA processing, Urb2/Npa2 "; NbS00007905g0010.1 protein AED:0.19 eAED:0.19 QI:296|0.85|1|1|1|1|8|344|312; (*GB) gi|359475054|ref|XP_003631576.1| (e_value=9e-174) PREDICTED: triosephosphate isomerase, chloroplastic-like isoform 2 [Vitis vinifera];; (*SWP) sp|P48496|TPIC_SPIOL (e_value=4e-171) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1;; (*TAIR) AT2G21170.2 (e_value=8e-162) | Symbols: TIM, PDTPI | triosephosphate isomerase | chr2:9071047-9073106 REVERSE LENGTH=306;; (*ITAG) Solyc01g111120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89253979-89260194 transcript_region:SL2.40ch01:89253979..89260194- go_terms:GO:0005515,GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** D6N3G7_GOSHI); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0005515,GO:0004807 NbS00027073g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.14|0.42|0.66|0.57|7|0|167; (*GB) gi|1052956|gb|AAC50019.1| (e_value=8e-38) high mobility group protein 2 HMG2 [Ipomoea nil];; (*SWP) sp|P40619|HMGL_IPONI (e_value=8e-35) HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1;; (*TAIR) AT1G20696.2 (e_value=5e-31) | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147;; (*ITAG) Solyc02g082700.2.1 (e_value=6e-37) genomic_reference:SL2.40ch02 gene_region:40932829-40934370 transcript_region:SL2.40ch02:40932829..40934370- go_terms:GO:0003682,GO:0030527 functional_description:"High mobility group protein (AHRD V1 **-- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003682,GO:0030527 NbS00005612g0002.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|225426777|ref|XP_002282782.1| (e_value=8e-87) PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera];; (*SWP) sp|A6QNR1|RRP36_BOVIN (e_value=5e-29) Ribosomal RNA processing protein 36 homolog OS=Bos taurus GN=RRP36 PE=2 SV=1;; (*TAIR) AT1G12650.4 (e_value=1e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=5e-111) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00005612g0106.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|1|1|4|0|744 NbS00005612g0109.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.4|1|0.5|0.6|5|0|323 NbS00020321g0003.1 protein AED:0.12 eAED:0.12 QI:13|1|0.25|1|1|1|4|0|757; (*GB) gi|224134539|ref|XP_002327429.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C888|PLDE1_ARATH (e_value=0.0) Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=2 SV=1;; (*TAIR) AT1G55180.1 (e_value=0.0) | Symbols: PLDEPSILON, PLDALPHA4 | phospholipase D alpha 4 | chr1:20585057-20587629 REVERSE LENGTH=762;; (*ITAG) Solyc08g066800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52865736-52872224 transcript_region:SL2.40ch08:52865736..52872224+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9FR61_SOLLC); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00020321g0021.1 protein AED:0.16 eAED:0.19 QI:0|0.87|0.55|1|0.75|0.77|9|0|837; (*GB) gi|225442323|ref|XP_002280107.1| (e_value=0.0) PREDICTED: inactive protein kinase SELMODRAFT_444075 isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=5e-131) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc03g121440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63606458-63610114 transcript_region:SL2.40ch03:63606458..63610114+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020321g0018.1 protein AED:0.10 eAED:0.10 QI:148|1|1|1|1|1|9|405|254; (*GB) gi|225442319|ref|XP_002279868.1| (e_value=6e-100) PREDICTED: uncharacterized protein LOC100263499 [Vitis vinifera];; (*SWP) sp|Q9WVB0|RBPMS_MOUSE (e_value=3e-16) RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms PE=2 SV=1;; (*TAIR) AT3G13700.2 (e_value=8e-95) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4490859-4492632 REVERSE LENGTH=287;; (*ITAG) Solyc03g121450.2.1 (e_value=3e-143) genomic_reference:SL2.40ch03 gene_region:63610599-63615516 transcript_region:SL2.40ch03:63610599..63615516- go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- Q7ZUL7_DANRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00020321g0025.1 protein AED:0.09 eAED:0.15 QI:11|0.5|0|1|0|0.66|3|0|260; (*GB) gi|147810266|emb|CAN71449.1| (e_value=2e-99) hypothetical protein VITISV_027853 [Vitis vinifera];; (*TAIR) AT1G55170.1 (e_value=2e-62) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). | chr1:20580578-20581706 FORWARD LENGTH=283;; (*ITAG) Solyc03g121500.2.1 (e_value=3e-109) genomic_reference:SL2.40ch03 gene_region:63633189-63640143 transcript_region:SL2.40ch03:63633189..63640143- functional_description:"Myosin-like protein (AHRD V1 ***- Q9C717_ARATH)"; NbS00020321g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|351724643|ref|NP_001235529.1| (e_value=2e-74) uncharacterized protein LOC100526887 [Glycine max];; (*SWP) sp|Q9C889|PR1F2_ARATH (e_value=2e-65) PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1;; (*TAIR) AT1G55190.1 (e_value=2e-66) | Symbols: PRA1.F2, PRA7 | PRA1 (Prenylated rab acceptor) family protein | chr1:20588450-20589019 FORWARD LENGTH=189;; (*ITAG) Solyc03g121460.1.1 (e_value=3e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63616739-63617287 transcript_region:SL2.40ch03:63616739..63617287- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00020321g0009.1 protein AED:0.41 eAED:0.47 QI:0|0|0|0.37|1|1|8|0|192; (*GB) gi|357501303|ref|XP_003620940.1| (e_value=6e-73) Thioredoxin-like protein [Medicago truncatula];; (*SWP) sp|Q8LEK4|TRL21_ARATH (e_value=5e-64) Thioredoxin-like 2-1, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2;; (*TAIR) AT4G29670.1 (e_value=2e-66) | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin 2 | chr4:14535772-14537108 REVERSE LENGTH=235;; (*ITAG) Solyc03g121480.2.1 (e_value=1e-87) genomic_reference:SL2.40ch03 gene_region:63624799-63627641 transcript_region:SL2.40ch03:63624799..63627641- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7MCJ1_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00015317g0003.1 protein AED:0.00 eAED:0.00 QI:401|1|1|1|1|1|3|218|131; (*GB) gi|255582397|ref|XP_002531987.1| (e_value=4e-51) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9T068|EPFL2_ARATH (e_value=3e-27) EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1;; (*TAIR) AT4G37810.1 (e_value=3e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128;; (*ITAG) Solyc02g091910.1.1 (e_value=2e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47703714-47704259 transcript_region:SL2.40ch02:47703714..47704259- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 2 (AHRD V1 ***- EPFL2_ARATH)"; NbS00051341g0008.1 protein AED:0.30 eAED:0.30 QI:165|0.87|0.88|1|0.87|0.88|9|961|295; (*GB) gi|255560331|ref|XP_002521182.1| (e_value=7e-125) amino acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=3e-84) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT5G04740.1 (e_value=2e-122) | Symbols: | ACT domain-containing protein | chr5:1368713-1371391 REVERSE LENGTH=301;; (*ITAG) Solyc11g006970.1.1 (e_value=2e-147) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1477794-1483280 transcript_region:SL2.40ch11:1477794..1483280+ functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"; NbS00051341g0010.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0.25|4|0|286; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-33) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00051341g0006.1 protein AED:0.26 eAED:0.26 QI:77|1|0.8|1|0.75|0.6|5|306|302; (*GB) gi|225450250|ref|XP_002268769.1| (e_value=3e-135) PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Vitis vinifera];; (*SWP) sp|Q6DJH2|ADPPT_XENLA (e_value=7e-36) L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Xenopus laevis GN=aasdhppt PE=2 SV=1;; (*ITAG) Solyc11g006930.1.1 (e_value=1e-143) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1441581-1445054 transcript_region:SL2.40ch11:1441581..1445054+ go_terms:GO:0009059 functional_description:"4&apos-phosphopantetheinyl transferase (AHRD V1 ***- B8EMK9_METSB); contains Interpro domain(s) IPR008278 4'-phosphopantetheinyl transferase "; GO:0009059 NbS00004997g0008.1 protein AED:0.28 eAED:0.28 QI:151|0.66|0.71|1|0.66|0.57|7|281|246; (*GB) gi|343887280|dbj|BAK61826.1| (e_value=1e-109) coclaurine N-methyltransferase [Citrus unshiu];; (*SWP) sp|Q5C9L6|CNMT_THLFG (e_value=2e-47) (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*TAIR) AT4G33110.2 (e_value=7e-78) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:15972497-15974531 REVERSE LENGTH=355;; (*ITAG) Solyc08g062610.2.1 (e_value=8e-114) genomic_reference:SL2.40ch08 gene_region:48777300-48780554 transcript_region:SL2.40ch08:48777300..48780554+ go_terms:GO:0005515,GO:0008168 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 ***- A9ASG7_BURM1); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0005515,GO:0008168 NbS00004997g0009.1 protein AED:0.12 eAED:0.12 QI:188|1|0.66|1|0.5|0.66|3|0|93; (*GB) gi|297802678|ref|XP_002869223.1| (e_value=5e-36) hypothetical protein ARALYDRAFT_913110 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SMZ9|Y4331_ARATH (e_value=4e-36) Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=2 SV=1;; (*TAIR) AT4G33100.1 (e_value=3e-37) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:15971701-15972342 FORWARD LENGTH=92;; (*ITAG) Solyc08g062620.2.1 (e_value=6e-55) genomic_reference:SL2.40ch08 gene_region:48785109-48786000 transcript_region:SL2.40ch08:48785109..48786000- go_terms:GO:0005515,GO:0043027 functional_description:"TP53-regulated inhibitor of apoptosis 1 (AHRD V1 ---* C1BK64_OSMMO); contains Interpro domain(s) IPR007918 Mitochondrial distribution and morphology family 35/apoptosis "; GO:0005515,GO:0043027 NbS00004997g0105.1 protein AED:0.12 eAED:0.12 QI:135|0.85|0.85|1|1|1|21|487|887 NbS00004997g0121.1 protein AED:0.15 eAED:0.16 QI:348|0.5|0.28|1|0.66|0.57|7|0|2240 NbS00004997g0123.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|0.75|0.6|5|429|575 NbC24320504g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|373849144|gb|AEY77415.1| (e_value=3e-92) actin, partial [Cirsium setosum];; (*SWP) sp|P93376|ACT6_TOBAC (e_value=3e-91) Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=4e-91) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=3e-91) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00008262g0004.1 protein AED:0.26 eAED:0.27 QI:0|0.5|0.6|1|0.75|0.8|5|495|136; (*GB) gi|224116550|ref|XP_002317329.1| (e_value=2e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|O32107|YUID_BACSU (e_value=5e-13) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT3G21610.1 (e_value=6e-56) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:7609377-7610601 REVERSE LENGTH=174;; (*ITAG) Solyc10g006140.2.1 (e_value=9e-65) genomic_reference:SL2.40ch10 gene_region:871373-877188 transcript_region:SL2.40ch10:871373..877188+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 **-- B6SYG4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00004032g0009.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|1|4|0|64 NbS00004032g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.71|0.5|0.75|1|1|8|0|290; (*GB) gi|6319165|gb|AAF07191.1|AF193845_1 (e_value=2e-171) branched-chain amino acid aminotransferase [Solanum tuberosum];; (*SWP) sp|Q9FYA6|BCAT5_ARATH (e_value=2e-154) Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1;; (*TAIR) AT5G65780.1 (e_value=1e-155) | Symbols: ATBCAT-5 | branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) | chr5:26316418-26318585 FORWARD LENGTH=415;; (*ITAG) Solyc03g043880.2.1 (e_value=4e-176) genomic_reference:SL2.40ch03 gene_region:11506663-11513215 transcript_region:SL2.40ch03:11506663..11513215- go_terms:GO:0004084 functional_description:"Branched-chain amino acid aminotransferase (AHRD V1 **** Q9SNY9_SOLTU); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0004084 NbS00004032g0011.1 protein AED:0.28 eAED:0.65 QI:0|0|0|1|0.66|0.25|4|0|185; (*GB) gi|2497543|sp|Q42954.1|KPYC_TOBAC (e_value=5e-30) RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK;; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=2e-31) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G26390.1 (e_value=7e-26) | Symbols: | Pyruvate kinase family protein | chr4:13342207-13344418 FORWARD LENGTH=497;; (*ITAG) Solyc01g049650.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:40681621-40683865 transcript_region:SL2.40ch01:40681621..40683865+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- B9SBM7_RICCO); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00011603g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|47825035|gb|AAT38805.1| (e_value=2e-47) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc01g056420.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47014669-47015578 transcript_region:SL2.40ch01:47014669..47015578- go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00049555g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.4|0.8|0.5|0.4|5|0|206; (*GB) gi|296088700|emb|CBI38150.3| (e_value=5e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7SYS6|DHI1B_XENLA (e_value=5e-30) Hydroxysteroid 11-beta-dehydrogenase 1-like protein B OS=Xenopus laevis GN=hsd11b1l-b PE=2 SV=1;; (*TAIR) AT5G50700.1 (e_value=7e-74) | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20623259-20624995 REVERSE LENGTH=349;; (*ITAG) Solyc06g072670.2.1 (e_value=5e-77) genomic_reference:SL2.40ch06 gene_region:41205612-41207945 transcript_region:SL2.40ch06:41205612..41207945- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- Q08PN0_STIAU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00030654g0007.1 protein AED:0.04 eAED:0.05 QI:200|0.87|0.66|1|0.5|0.55|9|0|1447; (*GB) gi|359476020|ref|XP_002281044.2| (e_value=8e-151) PREDICTED: uncharacterized protein LOC100261159 [Vitis vinifera];; (*TAIR) AT2G34780.1 (e_value=1e-43) | Symbols: EMB1611, MEE22 | maternal effect embryo arrest 22 | chr2:14668653-14673607 FORWARD LENGTH=1297;; (*ITAG) Solyc07g041330.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49715977-49726386 transcript_region:SL2.40ch07:49715977..49726386+ functional_description:"EMB1611/MEE22 (AHRD V1 ***- D7LH45_ARALY)"; NbS00023608g0005.1 protein AED:0.23 eAED:0.26 QI:0|0.33|0|1|0.33|0.25|4|57|758; (*GB) gi|359491499|ref|XP_003634283.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc03g119120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61865183-61867784 transcript_region:SL2.40ch03:61865183..61867784+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039378g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|297736862|emb|CBI26063.3| (e_value=2e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82248|NFYB5_ARATH (e_value=2e-55) Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1;; (*TAIR) AT2G47810.1 (e_value=1e-56) | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160;; (*ITAG) Solyc01g067130.2.1 (e_value=3e-67) genomic_reference:SL2.40ch01 gene_region:67899839-67900307 transcript_region:SL2.40ch01:67899839..67900307- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00016787g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|305379592|gb|ADM48810.1| (e_value=8e-66) hydroxyphenylpyruvate reductase [Perilla frutescens];; (*SWP) sp|A1RYE4|GYAR_THEPD (e_value=5e-19) Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=1e-60) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc12g044250.1.1 (e_value=4e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44591173-44593253 transcript_region:SL2.40ch12:44591173..44593253- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **-- GHRB_ERWT9); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00016787g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|117; (*GB) gi|388496610|gb|AFK36371.1| (e_value=1e-15) unknown [Lotus japonicus];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=4e-16) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT4G38150.2 (e_value=3e-17) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17901211-17902119 REVERSE LENGTH=302;; (*ITAG) Solyc12g096140.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63520457-63521479 transcript_region:SL2.40ch12:63520457..63521479- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020994g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|296087863|emb|CBI35119.3| (e_value=3e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=6e-31) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT1G08315.1 (e_value=3e-112) | Symbols: | ARM repeat superfamily protein | chr1:2620500-2621477 REVERSE LENGTH=325;; (*ITAG) Solyc01g096460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79309371-79310664 transcript_region:SL2.40ch01:79309371..79310664+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00008880g0002.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|394; (*GB) gi|225462211|ref|XP_002270778.1| (e_value=8e-79) PREDICTED: uncharacterized protein LOC100259352 [Vitis vinifera];; (*TAIR) AT1G79060.1 (e_value=1e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). | chr1:29741873-29743063 FORWARD LENGTH=396;; (*ITAG) Solyc10g005610.1.1 (e_value=1e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:495825-496940 transcript_region:SL2.40ch10:495825..496940+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049966g0007.1 protein AED:0.08 eAED:0.08 QI:151|0.75|0.8|1|0.75|0.8|5|17|268; (*GB) gi|255587854|ref|XP_002534417.1| (e_value=2e-132) Silicon transporter, putative [Ricinus communis];; (*SWP) sp|Q19KC1|NIP21_MAIZE (e_value=2e-99) Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2;; (*TAIR) AT4G18910.1 (e_value=1e-66) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc03g013340.2.1 (e_value=4e-154) genomic_reference:SL2.40ch03 gene_region:4420782-4428523 transcript_region:SL2.40ch03:4420782..4428523- go_terms:GO:0015250,GO:0015115 functional_description:"Aquaporin Z transmembrane water channel (AHRD V1 **** A4SKG8_AERS4); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250,GO:0015115 NbS00018522g0010.1 protein AED:0.06 eAED:0.06 QI:322|0.88|0.9|1|0.44|0.4|10|313|248; (*GB) gi|223973447|gb|ACN30911.1| (e_value=5e-100) unknown [Zea mays];; (*SWP) sp|Q28IE5|NIT2_XENTR (e_value=2e-80) Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1;; (*TAIR) AT5G12040.1 (e_value=8e-101) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc06g064880.2.1 (e_value=1e-150) genomic_reference:SL2.40ch06 gene_region:36832717-36835834 transcript_region:SL2.40ch06:36832717..36835834+ go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00018522g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|465; (*GB) gi|226235458|dbj|BAH47641.1| (e_value=0.0) progesterone 5beta reductase-B [Nicotiana tabacum];; (*SWP) sp|O74913|YJ72_SCHPO (e_value=3e-24) Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=2 SV=1;; (*TAIR) AT4G24220.1 (e_value=1e-180) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388;; (*ITAG) Solyc10g049620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41753579-41754837 transcript_region:SL2.40ch10:41753579..41754837+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00018522g0009.1 protein AED:0.12 eAED:0.12 QI:230|1|1|1|1|1|2|315|144; (*GB) gi|225429337|ref|XP_002272147.1| (e_value=2e-52) PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera];; (*TAIR) AT2G14880.1 (e_value=6e-48) | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:6393686-6394841 REVERSE LENGTH=141;; (*ITAG) Solyc01g107330.2.1 (e_value=5e-65) genomic_reference:SL2.40ch01 gene_region:86657058-86659620 transcript_region:SL2.40ch01:86657058..86659620- functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- D6VG39_9BURK); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00020876g0008.1 protein AED:0.09 eAED:0.09 QI:106|1|1|1|1|1|7|349|302; (*GB) gi|297824257|ref|XP_002880011.1| (e_value=0.0) ribose-phosphate pyrophosphokinase 4 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q680A5|KPRS4_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsis thaliana GN=PRS4 PE=2 SV=2;; (*TAIR) AT2G42910.1 (e_value=0.0) | Symbols: | Phosphoribosyltransferase family protein | chr2:17856396-17858394 FORWARD LENGTH=337;; (*ITAG) Solyc10g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1994533-1999282 transcript_region:SL2.40ch10:1994533..1999282+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- D7LJE3_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00020876g0009.1 protein AED:0.29 eAED:0.29 QI:111|0.86|0.75|1|0.8|0.75|16|527|846; (*GB) gi|359485142|ref|XP_002279792.2| (e_value=0.0) PREDICTED: protein MEI2-like 2-like [Vitis vinifera];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc10g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00018322g0003.1 protein AED:0.29 eAED:0.26 QI:89|0.85|0.75|1|0.42|0.62|8|1019|359; (*GB) gi|225435692|ref|XP_002283435.1| (e_value=4e-127) PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q7TPN3|PIGV_MOUSE (e_value=3e-25) GPI mannosyltransferase 2 OS=Mus musculus GN=Pigv PE=2 SV=2;; (*TAIR) AT1G11880.1 (e_value=6e-117) | Symbols: | transferases, transferring hexosyl groups | chr1:4007909-4010327 REVERSE LENGTH=489;; (*ITAG) Solyc01g006000.2.1 (e_value=3e-164) genomic_reference:SL2.40ch01 gene_region:663324-669843 transcript_region:SL2.40ch01:663324..669843+ go_terms:GO:0000030 functional_description:"GPI mannosyltransferase 2 (AHRD V1 **** A8N6M5_COPC7); contains Interpro domain(s) IPR007315 Mannosyltransferase, PIG-V "; GO:0000030 NbS00017362g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|2145023|gb|AAB58402.1| (e_value=2e-28) 15.5 kDa oleosin [Sesamum indicum];; (*SWP) sp|Q39165|OLEO2_ARATH (e_value=1e-20) Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=1 SV=1;; (*TAIR) AT5G40420.1 (e_value=8e-22) | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173622-16174740 REVERSE LENGTH=199;; (*ITAG) Solyc03g112440.1.1 (e_value=9e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56898083-56898544 transcript_region:SL2.40ch03:56898083..56898544+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- O04925_SESIN); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00023727g0008.1 protein AED:0.23 eAED:0.23 QI:138|0.92|0.85|1|0.69|0.78|14|115|499; (*GB) gi|2911280|gb|AAC04324.1| (e_value=0.0) PK12 protein kinase [Nicotiana tabacum];; (*SWP) sp|P51567|AFC2_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1;; (*TAIR) AT4G24740.1 (e_value=0.0) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427;; (*ITAG) Solyc05g013770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7077909-7082147 transcript_region:SL2.40ch05:7077909..7082147- go_terms:GO:0003713,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0003713,GO:0004674 NbS00023727g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.6|1|0.75|0.8|5|0|714; (*GB) gi|359473118|ref|XP_002285440.2| (e_value=0.0) PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera];; (*TAIR) AT1G24560.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). | chr1:8702644-8705640 FORWARD LENGTH=678;; (*ITAG) Solyc05g013780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7090546-7096093 transcript_region:SL2.40ch05:7090546..7096093+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019826g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|0|0.5|2|342|248; (*GB) gi|225464826|ref|XP_002272164.1| (e_value=4e-32) PREDICTED: uncharacterized protein LOC100258714 [Vitis vinifera];; (*TAIR) AT2G27260.1 (e_value=3e-24) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11669769-11670500 FORWARD LENGTH=243;; (*ITAG) Solyc06g074050.1.1 (e_value=1e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42167694-42168437 transcript_region:SL2.40ch06:42167694..42168437- functional_description:"Harpin-induced 1 (AHRD V1 **-- Q2HSJ9_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00019826g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|171; (*GB) gi|28392929|gb|AAO41900.1| (e_value=9e-50) putative VAMP protein SEC22 [Arabidopsis thaliana];; (*TAIR) AT3G11660.1 (e_value=5e-52) | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3679031-3679660 REVERSE LENGTH=209;; (*ITAG) Solyc06g074040.1.1 (e_value=1e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42162942-42163568 transcript_region:SL2.40ch06:42162942..42163568- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZH6_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00030866g0009.1 protein AED:0.25 eAED:0.25 QI:273|0.71|0.66|1|0.92|0.93|15|0|473; (*GB) gi|225443326|ref|XP_002262765.1| (e_value=0.0) PREDICTED: metal tolerance protein C4 [Vitis vinifera];; (*SWP) sp|Q8H1G3|MTPC4_ARATH (e_value=2e-178) Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1;; (*TAIR) AT1G51610.1 (e_value=1e-179) | Symbols: | Cation efflux family protein | chr1:19136625-19139621 FORWARD LENGTH=457;; (*ITAG) Solyc06g063250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36336794-36343467 transcript_region:SL2.40ch06:36336794..36343467- go_terms:GO:0005385,GO:0003700 functional_description:"Cation diffusion facilitator family transporter (AHRD V1 **** D0LPV3_HALO1); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0005385,GO:0003700 NbS00030866g0014.1 protein AED:0.33 eAED:0.33 QI:0|0.63|0.66|1|0.54|0.66|12|0|449; (*GB) gi|359483238|ref|XP_003632926.1| (e_value=0.0) PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Vitis vinifera];; (*SWP) sp|Q9C512|MNS1_ARATH (e_value=0.0) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1;; (*TAIR) AT1G51590.1 (e_value=0.0) | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1:19128315-19132132 REVERSE LENGTH=560;; (*ITAG) Solyc06g063260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36344391-36356737 transcript_region:SL2.40ch06:36344391..36356737- go_terms:GO:0004571,GO:0004559 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** Q9SEH8_SOYBN); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571,GO:0004559 NbS00030866g0010.1 protein AED:0.03 eAED:0.03 QI:186|1|1|1|1|1|6|389|408; (*GB) gi|118482411|gb|ABK93128.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT3G21190.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:7432579-7434543 REVERSE LENGTH=422;; (*ITAG) Solyc06g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36331992-36336504 transcript_region:SL2.40ch06:36331992..36336504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00018748g0005.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|3|0|236; (*GB) gi|215400624|gb|ACJ66297.1| (e_value=4e-116) phenylalanine ammonia-lyase 4 [Nicotiana tabacum];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=2e-117) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=3e-94) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc09g007920.2.1 (e_value=5e-112) genomic_reference:SL2.40ch09 gene_region:1435451-1440492 transcript_region:SL2.40ch09:1435451..1440492+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00018748g0004.1 protein AED:0.43 eAED:0.53 QI:0|0|0|1|0|0.5|2|0|103; (*GB) gi|224577933|gb|ACN57640.1| (e_value=4e-42) At3g10340-like protein [Capsella grandiflora];; (*SWP) sp|P26600|PAL5_SOLLC (e_value=3e-42) Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1;; (*TAIR) AT3G10340.1 (e_value=3e-41) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc09g007910.2.1 (e_value=3e-43) genomic_reference:SL2.40ch09 gene_region:1429132-1437334 transcript_region:SL2.40ch09:1429132..1437334+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00018748g0006.1 protein AED:0.44 eAED:0.72 QI:0|0|0|1|0|0|2|0|94; (*ITAG) Solyc01g005180.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:147437-147712 transcript_region:SL2.40ch01:147437..147712- functional_description:"Unknown Protein (AHRD V1)"; NbS00041189g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|12963340|gb|AAK11220.1|AF325673_1 (e_value=1e-130) LRR protein S/D4 [Petunia x hybrida];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=7e-30) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT1G33590.1 (e_value=3e-35) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:12177788-12179221 FORWARD LENGTH=477;; (*ITAG) Solyc01g011050.2.1 (e_value=3e-133) genomic_reference:SL2.40ch01 gene_region:7014098-7016194 transcript_region:SL2.40ch01:7014098..7016194+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00020173g0004.1 protein AED:0.23 eAED:0.23 QI:146|0|0.5|0.5|1|1|2|0|63; (*GB) gi|255546185|ref|XP_002514152.1| (e_value=8e-16) Grave disease carrier protein, putative [Ricinus communis];; (*TAIR) AT4G26180.1 (e_value=7e-15) | Symbols: | Mitochondrial substrate carrier family protein | chr4:13260263-13261887 REVERSE LENGTH=325;; (*ITAG) Solyc12g008770.1.1 (e_value=7e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2123672-2126297 transcript_region:SL2.40ch12:2123672..2126297+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00020173g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|175; (*ITAG) Solyc07g021710.2.1 (e_value=7e-18) genomic_reference:SL2.40ch07 gene_region:21223195-21224532 transcript_region:SL2.40ch07:21223195..21224532+ go_terms:GO:0003824 functional_description:"Phosphatase (AHRD V1 ***- D2V497_NAEGR); contains Interpro domain(s) IPR006384 Pyridoxal phosphate phosphatase-related "; GO:0003824 NbS00026258g0017.1 protein AED:0.25 eAED:0.25 QI:172|0.75|0.8|1|0.5|0.2|5|311|122; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=3e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=9e-55) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=7e-56) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc01g094560.2.1 (e_value=3e-71) genomic_reference:SL2.40ch01 gene_region:77748472-77751106 transcript_region:SL2.40ch01:77748472..77751106- go_terms:GO:0003735 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735 NbS00026258g0016.1 protein AED:0.01 eAED:0.01 QI:483|0.75|0.8|1|1|1|5|43|525; (*GB) gi|16797908|gb|AAL29212.1|AF354454_1 (e_value=0.0) putative acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SMT7|4CLLA_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1;; (*TAIR) AT3G48990.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:18159031-18161294 REVERSE LENGTH=514;; (*ITAG) Solyc06g035960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22012028-22016323 transcript_region:SL2.40ch06:22012028..22016323+ go_terms:GO:0016207 functional_description:"4-coumarate-CoA ligase-like protein (AHRD V1 **** Q9SMT7_ARATH); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00026258g0019.1 protein AED:0.35 eAED:0.35 QI:0|1|0.86|1|0.85|0.8|15|230|592; (*GB) gi|302143859|emb|CBI22720.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G49000.1 (e_value=2e-126) | Symbols: | RNA polymerase III subunit RPC82 family protein | chr3:18162903-18165846 FORWARD LENGTH=523;; (*ITAG) Solyc06g036000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22052164-22063575 transcript_region:SL2.40ch06:22052164..22063575+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase III subunit C (AHRD V1 ***- B0WS61_CULQU); contains Interpro domain(s) IPR008806 RNA polymerase III Rpc82, C -terminal "; GO:0006350 NbS00026258g0009.1 protein AED:0.48 eAED:0.73 QI:0|0|0|0.66|1|1|3|0|119 NbS00026258g0018.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0|0|3|0|63 NbS00052470g0002.1 protein AED:0.00 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|356570243|ref|XP_003553299.1| (e_value=1e-67) PREDICTED: ras-related protein RABB1b-like [Glycine max];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=2e-68) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=2e-69) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc06g060210.1.1 (e_value=7e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00001566g0001.1 protein AED:0.00 eAED:0.00 QI:20|1|1|1|0|0|3|79|66 NbS00047554g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|6|0|280; (*GB) gi|356534633|ref|XP_003535857.1| (e_value=3e-102) PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Glycine max];; (*SWP) sp|Q41745|LPAT_MAIZE (e_value=8e-96) 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1;; (*TAIR) AT3G57650.1 (e_value=9e-93) | Symbols: LPAT2 | lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389;; (*ITAG) Solyc11g065890.1.1 (e_value=2e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48552169-48563226 transcript_region:SL2.40ch11:48552169..48563226+ go_terms:GO:0008152 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 ***- Q2Z1Y8_PRUMU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0008152 NbS00009756g0022.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.5|1|0|0.5|4|0|186; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=1e-91) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=3e-85) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.2 (e_value=5e-88) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15012251 REVERSE LENGTH=389;; (*ITAG) Solyc08g078650.2.1 (e_value=2e-103) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00009756g0021.1 protein AED:0.28 eAED:0.28 QI:321|0.42|0.5|1|0.57|0.5|8|177|497; (*GB) gi|225461582|ref|XP_002282878.1| (e_value=5e-109) PREDICTED: uncharacterized protein LOC100264059 [Vitis vinifera];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=3e-11) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT1G53190.2 (e_value=2e-44) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc10g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1543949-1548850 transcript_region:SL2.40ch10:1543949..1548850+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00009756g0014.1 protein AED:0.32 eAED:0.35 QI:0|1|0.75|1|1|1|4|0|281; (*GB) gi|225461564|ref|XP_002282834.1| (e_value=6e-82) PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera];; (*TAIR) AT3G15110.1 (e_value=7e-60) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:5084394-5085823 REVERSE LENGTH=266;; (*ITAG) Solyc10g007120.2.1 (e_value=6e-137) genomic_reference:SL2.40ch10 gene_region:1522518-1524789 transcript_region:SL2.40ch10:1522518..1524789+ functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 *-*- Q9LIM4_ARATH)"; NbS00009756g0009.1 protein AED:0.38 eAED:0.38 QI:0|0.25|0.2|0.8|1|1|5|0|172; (*GB) gi|225457586|ref|XP_002272933.1| (e_value=8e-69) PREDICTED: uncharacterized protein At5g43822 [Vitis vinifera];; (*SWP) sp|Q6NPG7|Y5382_ARATH (e_value=6e-45) Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1;; (*TAIR) AT5G43822.1 (e_value=5e-46) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195;; (*ITAG) Solyc08g069130.1.1 (e_value=5e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55412822-55413421 transcript_region:SL2.40ch08:55412822..55413421- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MNK9_ARALY)"; NbS00009756g0011.1 protein AED:0.91 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|223 NbS00009756g0019.1 protein AED:0.00 eAED:0.00 QI:145|1|1|1|0.75|0.6|5|290|88; (*GB) gi|297740448|emb|CBI30630.3| (e_value=2e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LHP0|ELOF1_ORYSJ (e_value=5e-44) Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1;; (*TAIR) AT5G46030.1 (e_value=2e-39) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120;; (*ITAG) Solyc02g077440.2.1 (e_value=1e-43) genomic_reference:SL2.40ch02 gene_region:36959365-36961353 transcript_region:SL2.40ch02:36959365..36961353+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbS00009756g0024.1 protein AED:0.15 eAED:0.15 QI:150|0.8|0.72|0.90|0.6|0.72|11|0|601; (*GB) gi|302142941|emb|CBI20236.3| (e_value=1e-136) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G18380.1 (e_value=3e-124) | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=348;; (*ITAG) Solyc10g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1526435-1535042 transcript_region:SL2.40ch10:1526435..1535042- go_terms:GO:0006355 functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 *-*- Q0DC52_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00020394g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|299; (*GB) gi|147805136|emb|CAN73347.1| (e_value=2e-108) hypothetical protein VITISV_037919 [Vitis vinifera];; (*SWP) sp|Q9S733|PP196_ARATH (e_value=7e-88) Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2 SV=1;; (*TAIR) AT2G40240.1 (e_value=5e-89) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:16811051-16812106 FORWARD LENGTH=351;; (*ITAG) Solyc03g095960.1.1 (e_value=2e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:51114552-51115541 transcript_region:SL2.40ch03:51114552..51115541- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEH5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020394g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|75 NbS00020394g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|213; (*GB) gi|225448503|ref|XP_002272821.1| (e_value=2e-60) PREDICTED: LOB domain-containing protein 21 [Vitis vinifera];; (*SWP) sp|Q9SRL8|LBD21_ARATH (e_value=7e-51) LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1;; (*TAIR) AT3G11090.1 (e_value=6e-52) | Symbols: LBD21 | LOB domain-containing protein 21 | chr3:3475036-3475533 FORWARD LENGTH=165;; (*ITAG) Solyc03g095940.1.1 (e_value=5e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51109385-51109897 transcript_region:SL2.40ch03:51109385..51109897+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 ***- D7L9U4_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00034607g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0.5|0.6|5|0|377; (*GB) gi|147826488|emb|CAN66212.1| (e_value=5e-147) hypothetical protein VITISV_013736 [Vitis vinifera];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=2e-141) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=1e-142) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc03g031760.2.1 (e_value=2e-146) genomic_reference:SL2.40ch03 gene_region:8510446-8514148 transcript_region:SL2.40ch03:8510446..8514148- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00022885g0002.1 protein AED:0.16 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|106; (*GB) gi|359485349|ref|XP_003633262.1| (e_value=6e-16) PREDICTED: uncharacterized protein LOC100852705 [Vitis vinifera];; (*ITAG) Solyc07g045060.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:55479705-55480016 transcript_region:SL2.40ch07:55479705..55480016+ go_terms:GO:0005516 functional_description:"Auxin responsive protein (AHRD V1 ***- Q75GP8_ORYSJ); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00027085g0005.1 protein AED:0.52 eAED:0.62 QI:0|0|0.2|0.6|1|1|5|0|92 NbS00018587g0004.1 protein AED:0.16 eAED:0.16 QI:201|0.25|0.4|0.4|1|0.8|5|0|157; (*GB) gi|3299896|gb|AAC25984.1| (e_value=6e-79) beta-galactosidase [Solanum lycopersicum];; (*SWP) sp|Q9SCV0|BGA12_ARATH (e_value=9e-73) Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1;; (*TAIR) AT4G26140.2 (e_value=8e-75) | Symbols: BGAL12 | beta-galactosidase 12 | chr4:13243674-13247823 REVERSE LENGTH=636;; (*ITAG) Solyc12g008840.1.1 (e_value=1e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00034524g0003.1 protein AED:0.01 eAED:0.01 QI:99|1|1|1|1|1|3|214|581; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=1e-49) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=3e-30) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=2e-31) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc01g065740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009900g0004.1 protein AED:0.24 eAED:0.24 QI:75|1|1|1|0.8|0.83|6|562|388; (*GB) gi|255580126|ref|XP_002530895.1| (e_value=2e-106) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*TAIR) AT2G28600.1 (e_value=4e-79) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12251845-12254672 FORWARD LENGTH=502;; (*ITAG) Solyc11g007610.1.1 (e_value=6e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1862726-1866719 transcript_region:SL2.40ch11:1862726..1866719- go_terms:GO:0008026 functional_description:"DEAD-box ATP-dependent RNA helicase 5 (AHRD V1 *-*- RH5_ORYSJ); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00027081g0305.1 protein AED:0.16 eAED:0.18 QI:0|0.4|0.16|0.83|0.2|0.33|6|0|222 NbS00030463g0001.1 protein AED:0.31 eAED:0.37 QI:0|0.71|0.37|1|1|1|8|0|252; (*GB) gi|114149950|gb|ABI51594.1| (e_value=3e-164) chloroplast post-illumination chlorophyll fluorescence increase protein [Nicotiana tabacum];; (*TAIR) AT3G15840.1 (e_value=5e-109) | Symbols: PIFI | post-illumination chlorophyll fluorescence increase | chr3:5356782-5358418 REVERSE LENGTH=268;; (*ITAG) Solyc12g042770.1.1 (e_value=7e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43642840-43645284 transcript_region:SL2.40ch12:43642840..43645284- functional_description:"Chloroplast post-illumination chlorophyll fluorescence increase protein (AHRD V1 **-- A1Y9I8_TOBAC)"; NbS00003231g0019.1 protein AED:0.14 eAED:0.14 QI:0|0.91|0.84|1|0.58|0.53|13|267|514; (*GB) gi|359478816|ref|XP_002283762.2| (e_value=1e-178) PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera];; (*SWP) sp|O08795|GLU2B_MOUSE (e_value=1e-25) Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1;; (*TAIR) AT5G56360.1 (e_value=2e-146) | Symbols: PSL4 | calmodulin-binding protein | chr5:22823586-22827950 REVERSE LENGTH=647;; (*ITAG) Solyc12g099660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65054811-65063399 transcript_region:SL2.40ch12:65054811..65063399+ go_terms:GO:0005515 functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B6K4H4_SCHJY); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0005515 NbS00003231g0014.1 protein AED:0.14 eAED:0.14 QI:117|1|0.5|1|0|0.5|2|0|81 NbS00003231g0013.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|6|122|261; (*GB) gi|359473203|ref|XP_002265544.2| (e_value=3e-137) PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera];; (*SWP) sp|Q54XX1|SRPRB_DICDI (e_value=1e-25) Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1;; (*TAIR) AT5G05670.1 (e_value=2e-129) | Symbols: | signal recognition particle binding | chr5:1695916-1697534 REVERSE LENGTH=260;; (*ITAG) Solyc11g043150.1.1 (e_value=3e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34946955-34953284 transcript_region:SL2.40ch11:34946955..34953284- go_terms:GO:0005525 functional_description:"Signal recognition particle receptor beta subunit-like protein (AHRD V1 **-- Q0WRZ7_ARATH); contains Interpro domain(s) IPR019009 Signal recognition particle receptor, beta subunit "; GO:0005525 NbS00003231g0004.1 protein AED:0.21 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|206586409|gb|ACI15739.1| (e_value=5e-20) chloroplast photosystem II 5 kDa precursor protein [Picrorhiza kurrooa];; (*SWP) sp|P31336|PST2_GOSHI (e_value=7e-14) Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1;; (*ITAG) Solyc12g099650.1.1 (e_value=3e-44) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65050922-65051263 transcript_region:SL2.40ch12:65050922..65051263+ functional_description:"Photosystem II 5 kDa protein, chloroplastic (AHRD V1 ***- PST2_GOSHI)"; NbS00003231g0016.1 protein AED:0.00 eAED:0.00 QI:22|1|1|1|0|0|3|172|146; (*GB) gi|116789456|gb|ABK25253.1| (e_value=5e-14) unknown [Picea sitchensis];; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=8e-15) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*ITAG) Solyc07g064510.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:63845123-63849000 transcript_region:SL2.40ch07:63845123..63849000- go_terms:GO:0042802 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-* PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00003231g0008.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|127; (*GB) gi|224106189|ref|XP_002314078.1| (e_value=5e-41) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|O49255|NAC29_ARATH (e_value=3e-36) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=3e-37) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc10g083450.1.1 (e_value=7e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62570813-62573756 transcript_region:SL2.40ch10:62570813..62573756- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HNX9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00003231g0021.1 protein AED:0.09 eAED:0.12 QI:69|0.33|0.25|1|1|1|4|0|690; (*GB) gi|356503926|ref|XP_003520750.1| (e_value=3e-136) PREDICTED: histidine kinase CKI1-like [Glycine max];; (*SWP) sp|O22267|CKI1_ARATH (e_value=7e-77) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=5e-78) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00007136g0006.1 protein AED:0.10 eAED:0.10 QI:347|1|1|1|1|1|11|391|410; (*GB) gi|225447013|ref|XP_002268282.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 2 [Vitis vinifera];; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=407;; (*ITAG) Solyc07g052320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58140326-58144174 transcript_region:SL2.40ch07:58140326..58144174- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00007136g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|71 NbS00018653g0007.1 protein AED:0.06 eAED:0.15 QI:0|0.5|0|1|1|1|3|0|335; (*ITAG) Solyc07g063670.2.1 (e_value=3e-71) genomic_reference:SL2.40ch07 gene_region:63302957-63304266 transcript_region:SL2.40ch07:63302957..63304266+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018653g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|247; (*GB) gi|359485725|ref|XP_003633323.1| (e_value=7e-84) PREDICTED: uncharacterized protein C167.05-like isoform 4 [Vitis vinifera];; (*TAIR) AT1G11360.4 (e_value=6e-80) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc10g006760.2.1 (e_value=1e-101) genomic_reference:SL2.40ch10 gene_region:1212643-1214025 transcript_region:SL2.40ch10:1212643..1214025- go_terms:GO:0006950 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00018872g0004.1 protein AED:0.03 eAED:0.03 QI:19|1|1|1|0.71|0.62|8|408|508; (*GB) gi|255545648|ref|XP_002513884.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5B5X8|EXGA_EMENI (e_value=3e-39) Probable glucan 1,3-beta-glucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=exgA PE=3 SV=2;; (*ITAG) Solyc12g056960.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:48396635-48402298 transcript_region:SL2.40ch12:48396635..48402298- go_terms:GO:0005975 functional_description:"Glucan 1 3-beta-glucosidase (AHRD V1 ***- C1H4T0_PARBA); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00018872g0014.1 protein AED:0.12 eAED:0.12 QI:70|0.90|0.87|1|0.75|0.75|33|448|2345; (*GB) gi|225459364|ref|XP_002285808.1| (e_value=0.0) PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera];; (*SWP) sp|Q38970|ACC1_ARATH (e_value=0.0) Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1;; (*TAIR) AT1G36160.2 (e_value=0.0) | Symbols: ACC1 | acetyl-CoA carboxylase 1 | chr1:13534196-13543773 FORWARD LENGTH=2254;; (*ITAG) Solyc12g056940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00018872g0009.1 protein AED:0.52 eAED:0.52 QI:0|0|0|1|1|1|2|0|77; (*ITAG) Solyc12g056910.1.1 (e_value=4e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:48333661-48336580 transcript_region:SL2.40ch12:48333661..48336580- functional_description:"Os03g0385301 protein (Fragment) (AHRD V1 ***- C7J0C5_ORYSJ)"; NbS00032099g0003.1 protein AED:0.10 eAED:0.10 QI:145|1|0.8|1|1|1|10|0|653; (*GB) gi|225441084|ref|XP_002264613.1| (e_value=0.0) PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis vinifera];; (*SWP) sp|Q9ZQA8|PABPX_ARATH (e_value=3e-171) Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1;; (*TAIR) AT2G36660.1 (e_value=2e-172) | Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609;; (*ITAG) Solyc10g085750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64151047-64155955 transcript_region:SL2.40ch10:64151047..64155955- go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 ***- Q6DF12_XENTR); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00029359g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|0.5|0.33|3|0|143; (*GB) gi|255569722|ref|XP_002525825.1| (e_value=3e-35) Minichromosome maintenance protein MCM, putative [Ricinus communis];; (*TAIR) AT2G14050.1 (e_value=4e-27) | Symbols: MCM9 | minichromosome maintenance 9 | chr2:5909240-5913817 FORWARD LENGTH=646;; (*ITAG) Solyc01g105520.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:85428610-85440515 transcript_region:SL2.40ch01:85428610..85440515+ go_terms:GO:0043140 functional_description:"DNA replication licensing factor (AHRD V1 **** Q8JGR5_DANRE); contains Interpro domain(s) IPR001208 DNA-dependent ATPase MCM "; GO:0043140 NbS00029359g0009.1 protein AED:0.16 eAED:0.16 QI:212|0.92|0.92|1|0.69|0.71|14|341|711; (*GB) gi|359480489|ref|XP_002264408.2| (e_value=0.0) PREDICTED: LMBR1 domain-containing protein 2 homolog A-like [Vitis vinifera];; (*SWP) sp|Q54Q92|LMD2A_DICDI (e_value=2e-38) LMBR1 domain-containing protein 2 homolog A OS=Dictyostelium discoideum GN=DDB_G0284019 PE=3 SV=1;; (*TAIR) AT5G65290.1 (e_value=0.0) | Symbols: | LMBR1-like membrane protein | chr5:26089814-26094337 FORWARD LENGTH=733;; (*ITAG) Solyc01g105510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85417030-85427501 transcript_region:SL2.40ch01:85417030..85427501+ functional_description:"LMBR1 domain protein (AHRD V1 ***- B0XPH0_ASPFC); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00001843g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.84|0.7|0.95|0.94|0.9|20|0|1058; (*GB) gi|297741117|emb|CBI31848.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=0.0) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=0.0) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00001843g0015.1 protein AED:0.30 eAED:0.30 QI:1531|0.85|0.75|1|0.57|0.5|8|159|468; (*GB) gi|225439928|ref|XP_002280200.1| (e_value=2e-150) PREDICTED: uncharacterized protein LOC100263731 [Vitis vinifera];; (*TAIR) AT2G37150.2 (e_value=2e-73) | Symbols: | RING/U-box superfamily protein | chr2:15603748-15605988 REVERSE LENGTH=546;; (*ITAG) Solyc09g007530.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1106574-1110425 transcript_region:SL2.40ch09:1106574..1110425- go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005409g0006.1 protein AED:0.13 eAED:0.20 QI:0|0.77|0.6|1|0.88|0.9|10|71|773; (*GB) gi|225439311|ref|XP_002267275.1| (e_value=0.0) PREDICTED: probable glutamate carboxypeptidase 2-like [Vitis vinifera];; (*SWP) sp|Q9M1S8|GCP2_ARATH (e_value=0.0) Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3;; (*TAIR) AT3G54720.1 (e_value=0.0) | Symbols: AMP1, COP2, HPT, PT, MFO1 | Peptidase M28 family protein | chr3:20254852-20257815 REVERSE LENGTH=705;; (*ITAG) Solyc11g045250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37043969-37057788 transcript_region:SL2.40ch11:37043969..37057788- go_terms:GO:0006508 functional_description:"N-acetylated alpha-linked acidic dipeptidase 2 (AHRD V1 **-- Q3UZV6_MOUSE); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00005409g0106.1 protein AED:0.21 eAED:0.34 QI:18|0.4|0.33|1|0.8|0.5|6|0|206 NbS00005409g0101.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|479 NbS00004277g0105.1 protein AED:0.15 eAED:0.15 QI:201|1|1|1|0.66|0.75|4|271|320 NbS00019450g0001.1 protein AED:0.01 eAED:0.01 QI:91|0.8|0.83|1|0.8|0.83|6|357|304; (*GB) gi|224131402|ref|XP_002328530.1| (e_value=2e-119) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05010.1 (e_value=2e-120) | Symbols: | Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300;; (*ITAG) Solyc01g098210.2.1 (e_value=3e-166) genomic_reference:SL2.40ch01 gene_region:80558621-80563527 transcript_region:SL2.40ch01:80558621..80563527- functional_description:"Transmembrane protein adipocyte-associated 1 homolog (AHRD V1 **-- TPRA1_DANRE); contains Interpro domain(s) IPR018781 Protein of unknown function, transmembrane-40 "; NbS00019740g0004.1 protein AED:0.49 eAED:0.53 QI:0|0|0.25|0.75|0.66|1|4|96|91 NbS00020636g0015.1 protein AED:0.20 eAED:0.24 QI:37|0.21|0.06|0.93|0.57|0.53|15|0|1567; (*GB) gi|296088706|emb|CBI38156.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G24300.1 (e_value=2e-122) | Symbols: | GYF domain-containing protein | chr1:8614515-8620420 REVERSE LENGTH=1495;; (*ITAG) Solyc05g015930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13046102-13054405 transcript_region:SL2.40ch05:13046102..13054405+ functional_description:"GYF domain-containing protein (AHRD V1 *-*- D7KBQ1_ARALY); contains Interpro domain(s) IPR003169 GYF "; NbS00020636g0014.1 protein AED:0.29 eAED:0.29 QI:100|0.88|0.9|1|0.66|0.7|10|291|483; (*GB) gi|255547626|ref|XP_002514870.1| (e_value=0.0) Atrazine chlorohydrolase, putative [Ricinus communis];; (*SWP) sp|A5UMN6|MTAD_METS3 (e_value=2e-83) 5-methylthioadenosine/S-adenosylhomocysteine deaminase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=mtaD PE=3 SV=1;; (*ITAG) Solyc01g009940.1.1 (e_value=6e-180) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4541527-4544665 transcript_region:SL2.40ch01:4541527..4544665+ go_terms:GO:0016787 functional_description:"5-methylthioadenosine/S-adenosylhomocysteine deaminase (AHRD V1 **-- C0QS54_PERMH); contains Interpro domain(s) IPR006680 Amidohydrolase 1 "; GO:0016787 NbS00020636g0016.1 protein AED:0.14 eAED:0.14 QI:34|1|1|1|1|1|10|277|346; (*GB) gi|224075525|ref|XP_002304666.1| (e_value=4e-171) predicted protein [Populus trichocarpa];; (*TAIR) AT2G35450.1 (e_value=9e-163) | Symbols: | catalytics;hydrolases | chr2:14903201-14905361 REVERSE LENGTH=346;; (*ITAG) Solyc01g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4572832-4576793 transcript_region:SL2.40ch01:4572832..4576793- go_terms:GO:0008152 functional_description:"Amidohydrolase 2 (AHRD V1 ***- Q01SB2_SOLUE); contains Interpro domain(s) IPR006992 Amidohydrolase 2 "; GO:0008152 NbS00047681g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|561; (*GB) gi|224136286|ref|XP_002322291.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50900.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:20705051-20706718 REVERSE LENGTH=555;; (*ITAG) Solyc03g097740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53530837-53532501 transcript_region:SL2.40ch03:53530837..53532501- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MQC3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00021890g0004.1 protein AED:0.33 eAED:0.33 QI:89|0.5|0.33|0.66|0.5|0.66|3|0|79; (*GB) gi|147771522|emb|CAN75692.1| (e_value=6e-27) hypothetical protein VITISV_038533 [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=3e-24) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=2e-25) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=2e-30) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00031130g0003.1 protein AED:0.06 eAED:0.06 QI:108|0.6|0.83|0.83|0.8|1|6|5|172; (*GB) gi|225456377|ref|XP_002284092.1| (e_value=5e-56) PREDICTED: HVA22-like protein e [Vitis vinifera];; (*SWP) sp|Q9FED2|HA22E_ARATH (e_value=1e-49) HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1;; (*TAIR) AT5G50720.1 (e_value=1e-50) | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | chr5:20633442-20634502 REVERSE LENGTH=116;; (*ITAG) Solyc06g072680.2.1 (e_value=1e-77) genomic_reference:SL2.40ch06 gene_region:41208709-41209658 transcript_region:SL2.40ch06:41208709..41209658- functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-- C1C4Y8_RANCA); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00010666g0026.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|1|0.83|6|0|257; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=1e-172) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=3e-174) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=5e-148) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=7e-172) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00010666g0034.1 protein AED:0.27 eAED:0.27 QI:0|0.37|0|0.88|0.37|0.44|9|0|347; (*GB) gi|1842188|emb|CAA69726.1| (e_value=2e-152) mitochondrial phosphate translocator [Betula pendula];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=1e-89) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=1e-145) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc03g097840.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:53614811-53617119 transcript_region:SL2.40ch03:53614811..53617119- go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00010666g0028.1 protein AED:0.50 eAED:0.51 QI:0|0|0|0.5|0|0.75|4|0|147 NbS00010666g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|284|843; (*GB) gi|147865382|emb|CAN79811.1| (e_value=0.0) hypothetical protein VITISV_018821 [Vitis vinifera];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g097850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53624545-53627076 transcript_region:SL2.40ch03:53624545..53627076+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M889_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00010666g0041.1 protein AED:0.14 eAED:0.14 QI:0|0.91|0.84|1|0.83|0.84|13|186|521; (*GB) gi|255540089|ref|XP_002511109.1| (e_value=0.0) poly(A) polymerase, putative [Ricinus communis];; (*SWP) sp|P44439|PCNB_HAEIN (e_value=1e-31) Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1;; (*TAIR) AT5G23690.1 (e_value=0.0) | Symbols: | Polynucleotide adenylyltransferase family protein | chr5:7987664-7990466 FORWARD LENGTH=527;; (*ITAG) Solyc03g097830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53606572-53614598 transcript_region:SL2.40ch03:53606572..53614598+ go_terms:GO:0006396 functional_description:"Poly(A) polymerase (AHRD V1 ***- C3X539_OXAFO); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00010666g0029.1 protein AED:0.17 eAED:0.18 QI:0|0.6|0.5|1|0.6|0.66|6|0|272; (*GB) gi|257831431|gb|ACV71016.1| (e_value=8e-103) UPA16 [Capsicum annuum];; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=5e-57) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=4e-58) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097580.2.1 (e_value=9e-105) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00010666g0038.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.2|1|0.25|0.2|5|0|492; (*GB) gi|255586406|ref|XP_002533849.1| (e_value=0.0) nuclear transcription factor, X-box binding, putative [Ricinus communis];; (*SWP) sp|Q6YWQ4|HAK25_ORYSJ (e_value=5e-150) Potassium transporter 25 OS=Oryza sativa subsp. japonica GN=HAK25 PE=2 SV=1;; (*TAIR) AT2G40540.2 (e_value=8e-142) | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | potassium transporter 2 | chr2:16931445-16934516 FORWARD LENGTH=794;; (*ITAG) Solyc03g097860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53629613-53633565 transcript_region:SL2.40ch03:53629613..53633565+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00010666g0039.1 protein AED:0.41 eAED:0.58 QI:0|0|0|1|0|0.33|3|0|165; (*GB) gi|224117974|ref|XP_002317702.1| (e_value=1e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4I4|POT6_ARATH (e_value=3e-25) Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=3e-26) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc03g097860.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53629613-53633565 transcript_region:SL2.40ch03:53629613..53633565+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00010666g0040.1 protein AED:0.46 eAED:1.00 QI:81|0|0|1|0|0|2|102|16 NbS00040425g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|622; (*GB) gi|224099379|ref|XP_002311462.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=5e-130) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=4e-131) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc05g009400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3549555-3551952 transcript_region:SL2.40ch05:3549555..3551952+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004233g0006.1 protein AED:0.25 eAED:0.25 QI:25|1|1|1|0|0.5|2|32|320; (*GB) gi|297743774|emb|CBI36657.3| (e_value=1e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6GNT2|CL049_XENLA (e_value=4e-15) UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1;; (*TAIR) AT3G59390.1 (e_value=1e-123) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352); Has 184 Blast hits to 184 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:21946160-21948166 FORWARD LENGTH=273;; (*ITAG) Solyc06g054450.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33708201-33709022 transcript_region:SL2.40ch06:33708201..33709022+ functional_description:"UPF0454 protein C12orf49 homolog (AHRD V1 *--- C1BR83_9MAXI); contains Interpro domain(s) IPR019352 Protein of unknown function DUF2054 "; NbS00057343g0002.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|1|1|3|0|64 NbS00028471g0011.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|1|1|2|85|132 NbS00028471g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|224146466|ref|XP_002326015.1| (e_value=2e-34) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6J9Q2|ERF86_ARATH (e_value=2e-23) Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2;; (*TAIR) AT5G18560.1 (e_value=1e-24) | Symbols: PUCHI | Integrase-type DNA-binding superfamily protein | chr5:6164859-6165905 REVERSE LENGTH=348;; (*ITAG) Solyc04g072300.1.1 (e_value=6e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56931578-56932060 transcript_region:SL2.40ch04:56931578..56932060+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00028471g0014.1 protein AED:0.14 eAED:0.14 QI:25|0.91|0.92|1|0.91|0.92|13|449|419; (*GB) gi|225429246|ref|XP_002264732.1| (e_value=0.0) PREDICTED: exocyst complex component 3 [Vitis vinifera];; (*SWP) sp|Q54BP6|EXOC3_DICDI (e_value=3e-32) Exocyst complex component 3 OS=Dictyostelium discoideum GN=exoc3 PE=3 SV=1;; (*TAIR) AT1G71820.1 (e_value=0.0) | Symbols: SEC6 | SEC6 | chr1:27010022-27016745 FORWARD LENGTH=752;; (*ITAG) Solyc04g072290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56911520-56930725 transcript_region:SL2.40ch04:56911520..56930725+ functional_description:"Exocyst complex component sec6 (AHRD V1 ***- B0CUD6_LACBS); contains Interpro domain(s) IPR010326 Exocyst complex component Sec6 "; NbS00028839g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.76|1|0.91|0.92|13|0|966; (*GB) gi|359491847|ref|XP_002272793.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240982 [Vitis vinifera];; (*SWP) sp|Q9HGL2|YHLA_SCHPO (e_value=1e-14) Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=2 SV=1;; (*TAIR) AT1G20760.1 (e_value=0.0) | Symbols: | Calcium-binding EF hand family protein | chr1:7209515-7214773 FORWARD LENGTH=1019;; (*ITAG) Solyc04g082560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63788827-63804388 transcript_region:SL2.40ch04:63788827..63804388+ go_terms:GO:0005509 functional_description:"Actin cytoskeleton-regulatory complex protein PAN1 (AHRD V1 *--- PAN1_MAGGR); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028839g0013.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0.66|0.75|4|0|753; (*GB) gi|255539268|ref|XP_002510699.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SFX2|PUB43_ARATH (e_value=0.0) U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1;; (*TAIR) AT1G76390.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811;; (*ITAG) Solyc04g082570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00019862g0011.1 protein AED:0.25 eAED:0.25 QI:138|0.71|0.75|1|0.71|0.62|8|535|191; (*GB) gi|224120808|ref|XP_002318422.1| (e_value=1e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=5e-59) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=7e-56) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc03g083320.2.1 (e_value=1e-62) genomic_reference:SL2.40ch03 gene_region:46697415-46700140 transcript_region:SL2.40ch03:46697415..46700140+ go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00019862g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.5|1|0.71|0.75|8|0|491; (*GB) gi|70779014|gb|AAZ08051.1| (e_value=0.0) wax synthase [Petunia x hybrida];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=4e-110) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49190.1 (e_value=1e-145) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc10g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3495360-3501746 transcript_region:SL2.40ch10:3495360..3501746+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- Q124V7_POLSJ); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00019862g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.92|1|1|0.92|0.93|15|328|640; (*GB) gi|5931765|emb|CAB56619.1| (e_value=0.0) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=0.0) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.3 (e_value=0.0) | Symbols: DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=604;; (*ITAG) Solyc05g050600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59898851-59909884 transcript_region:SL2.40ch05:59898851..59909884+ go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q5XGH8_XENTR); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00033889g0017.1 protein AED:0.07 eAED:0.07 QI:201|1|0.66|1|0|0|3|745|136; (*GB) gi|255562940|ref|XP_002522475.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G26740.1 (e_value=2e-37) | Symbols: | Ribosomal L32p protein family | chr1:9245280-9246555 REVERSE LENGTH=134;; (*ITAG) Solyc05g013190.2.1 (e_value=3e-60) genomic_reference:SL2.40ch05 gene_region:6269489-6272834 transcript_region:SL2.40ch05:6269489..6272834- go_terms:GO:0015934 functional_description:"Ribosomal protein L32 (AHRD V1 ***- B6EV28_POPAL); contains Interpro domain(s) IPR002677 Ribosomal protein L32p "; GO:0015934 NbS00033889g0016.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0.5|2|0|456; (*GB) gi|358346983|ref|XP_003637542.1| (e_value=0.0) Beta-ketoacyl-CoA synthase [Medicago truncatula];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=0.0) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc05g013220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6279749-6282303 transcript_region:SL2.40ch05:6279749..6282303- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00033889g0009.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|3|0|263; (*GB) gi|224112267|ref|XP_002316137.1| (e_value=1e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LK93|PP145_ARATH (e_value=1e-89) Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2;; (*TAIR) AT2G02980.1 (e_value=1e-90) | Symbols: OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:868468-870279 FORWARD LENGTH=603;; (*ITAG) Solyc05g013200.1.1 (e_value=3e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6272993-6274810 transcript_region:SL2.40ch05:6272993..6274810+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00033889g0011.1 protein AED:0.62 eAED:0.66 QI:0|0|0|0.5|1|1|4|0|254; (*GB) gi|225425668|ref|XP_002269694.1| (e_value=7e-55) PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera];; (*SWP) sp|Q8LK93|PP145_ARATH (e_value=2e-50) Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2;; (*TAIR) AT2G02980.1 (e_value=2e-51) | Symbols: OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:868468-870279 FORWARD LENGTH=603;; (*ITAG) Solyc05g013200.1.1 (e_value=1e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6272993-6274810 transcript_region:SL2.40ch05:6272993..6274810+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00006427g0005.1 protein AED:0.13 eAED:0.17 QI:0|0.33|0.42|1|0|0|7|504|560; (*GB) gi|359476084|ref|XP_002282081.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera];; (*SWP) sp|Q9SIL5|PP165_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1;; (*TAIR) AT2G20540.1 (e_value=0.0) | Symbols: MEF21 | mitochondrial editing factor 21 | chr2:8844160-8845764 FORWARD LENGTH=534;; (*ITAG) Solyc09g092150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66645388-66646998 transcript_region:SL2.40ch09:66645388..66646998+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3P7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006427g0003.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|96; (*GB) gi|148908389|gb|ABR17308.1| (e_value=6e-24) unknown [Picea sitchensis];; (*SWP) sp|Q9C9L0|CUL3B_ARATH (e_value=3e-22) Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1;; (*TAIR) AT1G69670.1 (e_value=2e-23) | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:26202169-26204442 REVERSE LENGTH=732;; (*ITAG) Solyc02g087900.2.1 (e_value=1e-27) genomic_reference:SL2.40ch02 gene_region:44740242-44744447 transcript_region:SL2.40ch02:44740242..44744447+ go_terms:GO:0030332 functional_description:"Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00026996g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.66|3|0|563; (*GB) gi|297738492|emb|CBI27737.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M088|E135_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT5G20870.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:7080037-7081739 REVERSE LENGTH=501;; (*ITAG) Solyc07g017730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7882255-7885616 transcript_region:SL2.40ch07:7882255..7885616+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SWD3_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00007858g0007.1 protein AED:0.11 eAED:0.11 QI:122|1|1|1|1|1|2|146|271; (*GB) gi|255554749|ref|XP_002518412.1| (e_value=9e-153) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46700.1 (e_value=7e-128) | Symbols: TET1, TRN2 | Tetraspanin family protein | chr5:18951035-18952439 FORWARD LENGTH=269;; (*ITAG) Solyc08g076850.2.1 (e_value=8e-169) genomic_reference:SL2.40ch08 gene_region:57913123-57915117 transcript_region:SL2.40ch08:57913123..57915117+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00026335g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|1|1|3|0|413; (*GB) gi|325516246|gb|ADZ24701.1| (e_value=0.0) 4-hydroxyphenylpyruvate dioxygenase 2 [Solanum pennellii];; (*SWP) sp|O23920|HPPD_DAUCA (e_value=0.0) 4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G06570.1 (e_value=9e-180) | Symbols: PDS1, HPD | phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473;; (*ITAG) Solyc05g041200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:49398356-49402874 transcript_region:SL2.40ch05:49398356..49402874- go_terms:GO:0003868,GO:0016763 functional_description:"4-hydroxyphenylpyruvate dioxygenase (AHRD V1 **** B7X935_HEVBR); contains Interpro domain(s) IPR005956 4-hydroxyphenylpyruvate dioxygenase "; GO:0003868,GO:0016763 NbS00027658g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.33|1|1|1|6|0|404; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=0.0) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=5e-131) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc03g058890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:23968073-23970799 transcript_region:SL2.40ch03:23968073..23970799+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LQ55_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00012186g0006.1 protein AED:0.17 eAED:0.23 QI:0|0.25|0.2|1|0.5|0.4|5|0|460; (*GB) gi|359476356|ref|XP_003631824.1| (e_value=6e-129) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=1e-19) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=3e-26) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc08g066770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52808097-52813393 transcript_region:SL2.40ch08:52808097..52813393- go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00039264g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|109; (*GB) gi|255554380|ref|XP_002518229.1| (e_value=2e-31) CIL, putative [Ricinus communis];; (*SWP) sp|Q9LU68|CIA2_ARATH (e_value=3e-23) Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1;; (*TAIR) AT5G57180.1 (e_value=2e-24) | Symbols: CIA2 | chloroplast import apparatus 2 | chr5:23168393-23170294 FORWARD LENGTH=424;; (*ITAG) Solyc07g008540.2.1 (e_value=2e-44) genomic_reference:SL2.40ch07 gene_region:3466133-3469946 transcript_region:SL2.40ch07:3466133..3469946- go_terms:GO:0030528 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0030528 NbS00039264g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|0|1|0|184; (*GB) gi|225470656|ref|XP_002268213.1| (e_value=6e-25) PREDICTED: protein CHLOROPLAST IMPORT APPARATUS 2-like [Vitis vinifera];; (*ITAG) Solyc07g008540.2.1 (e_value=6e-83) genomic_reference:SL2.40ch07 gene_region:3466133-3469946 transcript_region:SL2.40ch07:3466133..3469946- go_terms:GO:0030528 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0030528 NbS00047703g0010.1 protein AED:0.30 eAED:0.31 QI:0|0.66|0.57|1|0.5|0.71|7|507|367; (*GB) gi|1170507|sp|P41380.1|IF4A3_NICPL (e_value=0.0) RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full=ATP-dependent RNA helicase eIF4A-3;; (*SWP) sp|P41380|IF4A3_NICPL (e_value=0.0) Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT3G19760.1 (e_value=0.0) | Symbols: EIF4A-III | eukaryotic initiation factor 4A-III | chr3:6863790-6866242 FORWARD LENGTH=408;; (*ITAG) Solyc11g033280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:22986368-22991947 transcript_region:SL2.40ch11:22986368..22991947- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase FAL1 (AHRD V1 ***- A8NX16_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00047703g0009.1 protein AED:0.21 eAED:0.22 QI:349|0.82|0.75|1|0.73|0.83|24|0|1434; (*GB) gi|300827402|gb|ADK36643.1| (e_value=0.0) MAPKKKe [Nicotiana benthamiana];; (*SWP) sp|Q8T2I8|SEPA_DICDI (e_value=2e-100) Serine/threonine-protein kinase sepA OS=Dictyostelium discoideum GN=sepA PE=2 SV=1;; (*TAIR) AT3G13530.1 (e_value=0.0) | Symbols: MAPKKK7, MAP3KE1 | mitogen-activated protein kinase kinase kinase 7 | chr3:4411934-4419320 REVERSE LENGTH=1368;; (*ITAG) Solyc11g033270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:22947724-22983117 transcript_region:SL2.40ch11:22947724..22983117+ go_terms:GO:0016301 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 *-** B2W0T3_PYRTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00034739g0004.1 protein AED:0.02 eAED:0.02 QI:130|1|1|1|1|1|4|445|129; (*GB) gi|224091949|ref|XP_002309412.1| (e_value=2e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RF83|CIRBP_PONAB (e_value=2e-22) Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1;; (*TAIR) AT5G06210.1 (e_value=3e-53) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:1878497-1879515 FORWARD LENGTH=146;; (*ITAG) Solyc10g083240.1.1 (e_value=6e-72) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:62415637-62418815 transcript_region:SL2.40ch10:62415637..62418815- go_terms:GO:0017091 functional_description:"RNA-binding protein (AHRD V1 **** Q941H9_TOBAC); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0017091 NbS00008951g0005.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|191; (*GB) gi|224109182|ref|XP_002315113.1| (e_value=2e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16250.1 (e_value=1e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183;; (*ITAG) Solyc08g014350.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4086041-4086586 transcript_region:SL2.40ch08:4086041..4086586- functional_description:"TO23-3 (Fragment) (AHRD V1 *-*- Q3LVQ6_TAROF)"; NbS00008951g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.57|0.25|1|0.28|0.25|8|0|352; (*GB) gi|225450508|ref|XP_002277072.1| (e_value=2e-89) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=5e-38) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=2e-83) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc12g096850.1.1 (e_value=2e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63948274-63952888 transcript_region:SL2.40ch12:63948274..63952888- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00008951g0006.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|225448417|ref|XP_002271819.1| (e_value=1e-54) PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q8W4J9|RPP8_ARATH (e_value=5e-35) Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2;; (*TAIR) AT5G43470.2 (e_value=4e-36) | Symbols: RPP8, HRT, RCY1 | Disease resistance protein (CC-NBS-LRR class) family | chr5:17463130-17466658 REVERSE LENGTH=908;; (*ITAG) Solyc12g096920.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63982696-63986146 transcript_region:SL2.40ch12:63982696..63986146+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00008951g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|369|241; (*GB) gi|296084322|emb|CBI24710.3| (e_value=7e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9R0X4|ACOT9_MOUSE (e_value=1e-24) Acyl-coenzyme A thioesterase 9, mitochondrial OS=Mus musculus GN=Acot9 PE=1 SV=1;; (*TAIR) AT2G30720.1 (e_value=1e-90) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr2:13089604-13091538 REVERSE LENGTH=455;; (*ITAG) Solyc12g019490.1.1 (e_value=7e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10584321-10593011 transcript_region:SL2.40ch12:10584321..10593011- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00017801g0005.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|297746207|emb|CBI16263.3| (e_value=5e-135) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=2e-116) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1;; (*TAIR) AT2G01290.1 (e_value=1e-117) | Symbols: RPI2 | ribose-5-phosphate isomerase 2 | chr2:149192-149989 REVERSE LENGTH=265;; (*ITAG) Solyc05g008370.1.1 (e_value=2e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2732607-2733413 transcript_region:SL2.40ch05:2732607..2733413+ go_terms:GO:0004751 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 **** A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0004751 NbS00017801g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|293; (*GB) gi|225430563|ref|XP_002262758.1| (e_value=4e-139) PREDICTED: uncharacterized protein LOC100257058 isoform 1 [Vitis vinifera];; (*TAIR) AT5G10750.1 (e_value=2e-134) | Symbols: | Protein of unknown function (DUF1336) | chr5:3399072-3399980 FORWARD LENGTH=302;; (*ITAG) Solyc08g068880.1.1 (e_value=4e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55178060-55179007 transcript_region:SL2.40ch08:55178060..55179007- functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00017801g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|358; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=5e-71) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-22) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-21) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g007060.2.1 (e_value=2e-103) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00017801g0010.1 protein AED:0.29 eAED:0.29 QI:345|0|0.25|0.5|1|1|4|0|75 NbS00017801g0014.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|142; (*GB) gi|324105298|gb|ADY18410.1| (e_value=7e-58) chloroplast polyphenol oxidase precursor, partial [Solanum melongena];; (*SWP) sp|Q06355|PPOB_SOLTU (e_value=2e-55) Catechol oxidase B, chloroplastic (Fragment) OS=Solanum tuberosum PE=2 SV=1;; (*ITAG) Solyc08g074630.1.1 (e_value=2e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:55921673-55923436 transcript_region:SL2.40ch08:55921673..55923436+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00017801g0016.1 protein AED:0.39 eAED:0.39 QI:0|0.75|0.6|0.8|1|0.8|5|0|236; (*GB) gi|225462089|ref|XP_002277017.1| (e_value=1e-77) PREDICTED: transcription initiation factor TFIID subunit 11 [Vitis vinifera];; (*SWP) sp|Q99JX1|TAF11_MOUSE (e_value=2e-27) Transcription initiation factor TFIID subunit 11 OS=Mus musculus GN=Taf11 PE=2 SV=1;; (*TAIR) AT4G20280.1 (e_value=9e-60) | Symbols: TAF11 | TBP-associated factor 11 | chr4:10953792-10954664 FORWARD LENGTH=210;; (*ITAG) Solyc05g018120.1.1 (e_value=6e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20042569-20043201 transcript_region:SL2.40ch05:20042569..20043201- go_terms:GO:0016986 functional_description:"Transcription initiation factor TFIID subunit 11 (AHRD V1 **** B6UGD0_MAIZE); contains Interpro domain(s) IPR006809 TAFII28-like protein "; GO:0016986 NbS00017801g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|155; (*GB) gi|54261824|gb|AAV31174.1| (e_value=3e-19) Putative disease resistance protein, identical [Solanum tuberosum];; (*ITAG) Solyc04g007060.2.1 (e_value=4e-54) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00017801g0015.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|0|0|2|0|203; (*GB) gi|1146426|gb|AAA85122.1| (e_value=2e-57) polyphenol oxidase [Solanum tuberosum];; (*SWP) sp|Q08304|PPOB_SOLLC (e_value=8e-57) Polyphenol oxidase B, chloroplastic OS=Solanum lycopersicum PE=3 SV=1;; (*ITAG) Solyc08g074680.2.1 (e_value=2e-56) genomic_reference:SL2.40ch08 gene_region:55995940-56008590 transcript_region:SL2.40ch08:55995940..56008590- go_terms:GO:0008152 functional_description:"Polyphenol oxidase (AHRD V1 *-*- Q41428_SOLTU); contains Interpro domain(s) IPR002227 Tyrosinase "; GO:0008152 NbS00002814g0002.1 protein AED:0.05 eAED:0.05 QI:343|1|1|1|0|0|3|126|105; (*GB) gi|255576465|ref|XP_002529124.1| (e_value=1e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G68585.1 (e_value=1e-17) | Symbols: | unknown protein; Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25756911-25757426 FORWARD LENGTH=116; NbS00004039g0004.1 protein AED:0.36 eAED:0.36 QI:156|1|1|1|1|1|2|85|60 NbS00004039g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|109 NbS00004039g0107.1 protein AED:0.18 eAED:0.18 QI:28|1|1|1|0.71|0.75|8|267|523 NbS00025945g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|255647266|gb|ACU24100.1| (e_value=1e-14) unknown [Glycine max];; (*SWP) sp|Q9SUK8|ERF39_ARATH (e_value=1e-13) Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1;; (*TAIR) AT4G16750.1 (e_value=8e-15) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:9421121-9421660 REVERSE LENGTH=179;; (*ITAG) Solyc01g090560.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:75989194-75990408 transcript_region:SL2.40ch01:75989194..75990408+ go_terms:GO:0005125,GO:0005138 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005125,GO:0005138 NbS00004516g0002.1 protein AED:0.23 eAED:0.95 QI:0|0|0.5|1|0|0.5|2|81|432; (*GB) gi|224097562|ref|XP_002310987.1| (e_value=8e-35) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g012660.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10555142-10556635 transcript_region:SL2.40ch00:10555142..10556635- functional_description:"F-box domain containing protein (AHRD V1 ***- B6UBC8_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00055738g0004.1 protein AED:0.13 eAED:0.13 QI:181|1|1|1|1|1|5|194|220; (*GB) gi|356502165|ref|XP_003519891.1| (e_value=4e-109) PREDICTED: LOW QUALITY PROTEIN: UPF0483 protein AAEL000016-like [Glycine max];; (*SWP) sp|Q7QBJ0|U483_ANOGA (e_value=3e-19) UPF0483 protein AGAP003155 OS=Anopheles gambiae GN=AGAP003155 PE=3 SV=3;; (*TAIR) AT5G65400.1 (e_value=4e-92) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:26131448-26133062 FORWARD LENGTH=252;; (*ITAG) Solyc11g010430.1.1 (e_value=1e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3488961-3494503 transcript_region:SL2.40ch11:3488961..3494503+ go_terms:GO:0017171 functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- C1BZZ2_9MAXI); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; GO:0017171 NbS00055738g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|255584971|ref|XP_002533197.1| (e_value=7e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01755.1 (e_value=2e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 120 Blast hits to 120 proteins in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:332249-332770 REVERSE LENGTH=173;; (*ITAG) Solyc03g006540.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:1111307-1112418 transcript_region:SL2.40ch03:1111307..1112418- functional_description:"Unknown Protein (AHRD V1)"; NbS00015461g0005.1 protein AED:0.04 eAED:0.05 QI:0|0.88|0.8|1|0.66|0.8|10|0|483; (*GB) gi|302143524|emb|CBI22085.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1U4|APC5_ARATH (e_value=1e-180) Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana GN=APC5 PE=2 SV=1;; (*TAIR) AT1G06590.1 (e_value=0.0) | Symbols: | unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:2016504-2024505 REVERSE LENGTH=916;; (*ITAG) Solyc08g067190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53380447-53403465 transcript_region:SL2.40ch08:53380447..53403465- functional_description:"Anaphase promoting complex subunit 5 (AHRD V1 ***- Q5SCA2_OSTTA)"; NbS00020101g0005.1 protein AED:0.26 eAED:0.26 QI:418|0.5|0.66|1|0.5|0.66|3|0|456; (*GB) gi|225461722|ref|XP_002285510.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255640 [Vitis vinifera];; (*TAIR) AT1G53380.3 (e_value=3e-152) | Symbols: | Plant protein of unknown function (DUF641) | chr1:19913341-19914702 REVERSE LENGTH=453;; (*ITAG) Solyc07g062310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62299974-62304315 transcript_region:SL2.40ch07:62299974..62304315+ functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00006659g0007.1 protein AED:0.22 eAED:0.22 QI:209|0.4|0.33|0.83|0.2|0.5|6|0|417; (*GB) gi|147780310|emb|CAN61437.1| (e_value=0.0) hypothetical protein VITISV_033770 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=3e-52) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G29230.1 (e_value=7e-134) | Symbols: anac075, NAC075 | NAC domain containing protein 75 | chr4:14410338-14414956 FORWARD LENGTH=498;; (*ITAG) Solyc05g026180.1.1 (e_value=2e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40024726-40030220 transcript_region:SL2.40ch05:40024726..40030220+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H8X7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00001073g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|74; (*GB) gi|224060399|ref|XP_002300180.1| (e_value=7e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41761.1 (e_value=6e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc05g050250.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59432993-59433286 transcript_region:SL2.40ch05:59432993..59433286- functional_description:"Unknown Protein (AHRD V1)"; NbS00001073g0011.1 protein AED:0.17 eAED:0.17 QI:464|0.83|0.57|1|0.83|0.85|7|0|706; (*GB) gi|225448311|ref|XP_002264923.1| (e_value=4e-136) PREDICTED: uncharacterized protein LOC100257088 [Vitis vinifera];; (*TAIR) AT5G64170.1 (e_value=4e-28) | Symbols: | dentin sialophosphoprotein-related | chr5:25672904-25675445 REVERSE LENGTH=566;; (*ITAG) Solyc01g105120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00001073g0010.1 protein AED:0.34 eAED:0.34 QI:0|1|0.84|1|0.91|0.84|13|0|383; (*GB) gi|255545672|ref|XP_002513896.1| (e_value=0.0) Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis];; (*SWP) sp|Q803I2|ERGI3_DANRE (e_value=9e-130) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1;; (*TAIR) AT1G36050.2 (e_value=0.0) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386;; (*ITAG) Solyc01g105100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85126229-85135705 transcript_region:SL2.40ch01:85126229..85135705- go_terms:GO:0042802 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0042802 NbS00006058g0011.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|303; (*GB) gi|225445943|ref|XP_002263967.1| (e_value=8e-30) PREDICTED: DNA ligase 4-like [Vitis vinifera];; (*ITAG) Solyc07g018000.2.1 (e_value=3e-112) genomic_reference:SL2.40ch07 gene_region:8779431-8791044 transcript_region:SL2.40ch07:8779431..8791044+ go_terms:GO:0005622 functional_description:"DNA ligase (AHRD V1 ***- B9IN68_POPTR); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00006058g0010.1 protein AED:0.36 eAED:0.47 QI:0|0.54|0.5|1|0.63|0.75|12|0|465; (*GB) gi|297735473|emb|CBI17913.3| (e_value=8e-150) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LL84|DNLI4_ARATH (e_value=4e-99) DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1;; (*TAIR) AT5G57160.1 (e_value=3e-100) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219;; (*ITAG) Solyc07g018000.2.1 (e_value=1e-168) genomic_reference:SL2.40ch07 gene_region:8779431-8791044 transcript_region:SL2.40ch07:8779431..8791044+ go_terms:GO:0005622 functional_description:"DNA ligase (AHRD V1 ***- B9IN68_POPTR); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00012347g0009.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|574; (*GB) gi|255586764|ref|XP_002534001.1| (e_value=8e-42) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LFA2|KIPK_ARATH (e_value=3e-13) Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1;; (*TAIR) AT2G36350.1 (e_value=1e-16) | Symbols: | Protein kinase superfamily protein | chr2:15238903-15241864 FORWARD LENGTH=949;; (*ITAG) Solyc10g083500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62615655-62619797 transcript_region:SL2.40ch10:62615655..62619797+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- A7VL53_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024661g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.90|1|0.9|1|11|357|444; (*GB) gi|193290700|gb|ACF17658.1| (e_value=0.0) putative 3-isopropylmalate dehydrogenase large subunit [Capsicum annuum];; (*SWP) sp|P93832|LEU32_ARATH (e_value=0.0) 3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=1 SV=1;; (*TAIR) AT1G80560.1 (e_value=0.0) | Symbols: ATIMD2, IMD2 | isopropylmalate dehydrogenase 2 | chr1:30287833-30290126 FORWARD LENGTH=405;; (*ITAG) Solyc05g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3194068-3201893 transcript_region:SL2.40ch05:3194068..3201893- go_terms:GO:0003862 functional_description:"3-isopropylmalate dehydrogenase (AHRD V1 **** B5LAV1_CAPAN); contains Interpro domain(s) IPR004429 Isopropylmalate dehydrogenase "; GO:0003862 NbS00024661g0112.1 protein AED:0.11 eAED:0.14 QI:0|0.25|0|1|0|0|5|0|217 NbS00024661g0108.1 protein AED:0.11 eAED:0.11 QI:233|1|1|1|1|1|4|247|261 NbS00024661g0107.1 protein AED:0.31 eAED:0.31 QI:312|0.75|1|1|0.75|0.6|5|744|205 NbS00012883g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.95|0.95|1|0.86|0.86|23|267|1011; (*GB) gi|225438920|ref|XP_002279290.1| (e_value=0.0) PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera];; (*SWP) sp|Q8NBP0|TTC13_HUMAN (e_value=1e-76) Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3;; (*TAIR) AT4G37460.1 (e_value=0.0) | Symbols: SRFR1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17608623-17615534 REVERSE LENGTH=1052;; (*ITAG) Solyc02g092780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48312156-48328500 transcript_region:SL2.40ch02:48312156..48328500+ go_terms:GO:0032947 functional_description:"TPR repeat protein (AHRD V1 **-- C4M0N5_ENTHI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0032947 NbS00012883g0011.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|224074227|ref|XP_002304309.1| (e_value=8e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50030.1 (e_value=1e-43) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr3:18546490-18548132 REVERSE LENGTH=501;; (*ITAG) Solyc04g078170.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00012883g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|282; (*GB) gi|225438918|ref|XP_002279273.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100242317 [Vitis vinifera];; (*TAIR) AT5G43120.1 (e_value=1e-56) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:17312602-17314368 FORWARD LENGTH=588;; (*ITAG) Solyc04g078170.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00049154g0002.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|0.25|0|5|0|168; (*GB) gi|225435638|ref|XP_002285659.1| (e_value=8e-46) PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera];; (*SWP) sp|P93748|SINA1_ARATH (e_value=2e-44) Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1;; (*TAIR) AT2G41980.1 (e_value=2e-45) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr2:17523494-17524692 REVERSE LENGTH=305;; (*ITAG) Solyc01g006190.2.1 (e_value=6e-57) genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00026463g0013.1 protein AED:0.13 eAED:0.13 QI:251|0.91|0.84|1|0.83|0.92|13|286|452; (*GB) gi|225423871|ref|XP_002281391.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249082 isoform 2 [Vitis vinifera];; (*TAIR) AT1G68820.1 (e_value=0.0) | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:25865852-25868800 FORWARD LENGTH=468;; (*ITAG) Solyc05g009870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4076564-4086234 transcript_region:SL2.40ch05:4076564..4086234- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 8 (AHRD V1 *--- Q6PIA0_HUMAN); contains Interpro domain(s) IPR019396 Transmembrane Fragile-X-F-associated protein "; GO:0008270 NbS00026463g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|209167914|gb|ACI41981.1| (e_value=8e-31) putative leucoanthocyanidin reductase [Diospyros kaki];; (*SWP) sp|Q84V83|LAR_DESUN (e_value=1e-22) Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1;; (*TAIR) AT1G75280.1 (e_value=7e-17) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr1:28252030-28253355 FORWARD LENGTH=310;; (*ITAG) Solyc05g009860.1.1 (e_value=3e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4073257-4073526 transcript_region:SL2.40ch05:4073257..4073526+ go_terms:GO:0008152 functional_description:"Leucoanthocyanidin reductase 1 (AHRD V1 *-*- Q3KN76_9ROSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00026463g0014.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|1|1|7|0|427; (*GB) gi|359472706|ref|XP_002278714.2| (e_value=2e-140) PREDICTED: GC-rich sequence DNA-binding factor 1-like [Vitis vinifera];; (*SWP) sp|Q9Y5B6|GCFC1_HUMAN (e_value=7e-22) GC-rich sequence DNA-binding factor 1 OS=Homo sapiens GN=GCFC1 PE=1 SV=2;; (*TAIR) AT5G08550.1 (e_value=3e-118) | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like protein | chr5:2765981-2770282 REVERSE LENGTH=908;; (*ITAG) Solyc05g009850.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4065885-4072574 transcript_region:SL2.40ch05:4065885..4072574+ go_terms:GO:0030371 functional_description:"Gc-rich sequence DNA-binding factor (AHRD V1 *-*- Q177S5_AEDAE); contains Interpro domain(s) IPR012890 GC-rich sequence DNA-binding factor-like "; GO:0030371 NbS00026463g0015.1 protein AED:0.64 eAED:0.66 QI:0|0.5|0|0.66|1|1|3|0|163; (*GB) gi|255544183|ref|XP_002513154.1| (e_value=2e-31) gc-rich sequence DNA-binding factor, putative [Ricinus communis];; (*TAIR) AT5G08550.1 (e_value=2e-28) | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like protein | chr5:2765981-2770282 REVERSE LENGTH=908;; (*ITAG) Solyc05g009850.2.1 (e_value=5e-43) genomic_reference:SL2.40ch05 gene_region:4065885-4072574 transcript_region:SL2.40ch05:4065885..4072574+ go_terms:GO:0030371 functional_description:"Gc-rich sequence DNA-binding factor (AHRD V1 *-*- Q177S5_AEDAE); contains Interpro domain(s) IPR012890 GC-rich sequence DNA-binding factor-like "; GO:0030371 NbS00000603g0001.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|1|1|2|0|163; (*GB) gi|40287496|gb|AAR83862.1| (e_value=1e-82) elicitor-inducible protein EIG-J7 [Capsicum annuum];; (*TAIR) AT4G39730.1 (e_value=2e-70) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc04g054980.2.1 (e_value=7e-94) genomic_reference:SL2.40ch04 gene_region:52664826-52665968 transcript_region:SL2.40ch04:52664826..52665968+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 *--- LOXH1_MOUSE); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00046656g0005.1 protein AED:0.19 eAED:0.19 QI:3|0.88|0.8|1|1|1|10|385|528; (*GB) gi|350539607|ref|NP_001233960.1| (e_value=0.0) mitogen-activated protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9C9U4|MPK15_ARATH (e_value=0.0) Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3;; (*TAIR) AT1G73670.1 (e_value=0.0) | Symbols: ATMPK15, MPK15 | MAP kinase 15 | chr1:27700212-27703168 FORWARD LENGTH=576;; (*ITAG) Solyc05g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2439987-2443704 transcript_region:SL2.40ch05:2439987..2443704+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00008407g0006.1 protein AED:0.16 eAED:0.19 QI:0|0.66|0.7|0.9|0.66|0.7|10|0|396; (*GB) gi|225436472|ref|XP_002273011.1| (e_value=1e-129) PREDICTED: uncharacterized protein LOC100265349 [Vitis vinifera];; (*TAIR) AT2G28130.1 (e_value=2e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11988823-11991397 FORWARD LENGTH=458;; (*ITAG) Solyc11g066340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49167159-49175841 transcript_region:SL2.40ch11:49167159..49175841+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011366g0013.1 protein AED:0.28 eAED:0.28 QI:1126|1|1|1|0|0.5|2|503|112 NbS00011366g0014.1 protein AED:0.40 eAED:0.41 QI:444|0.85|0.75|1|0.85|0.87|8|0|155; (*GB) gi|255572996|ref|XP_002527428.1| (e_value=7e-69) RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q058N4|MRS2B_ARATH (e_value=6e-65) Magnesium transporter MRS2-11, chloroplastic OS=Arabidopsis thaliana GN=MRS2-11 PE=1 SV=1;; (*TAIR) AT5G22830.1 (e_value=4e-66) | Symbols: ATMGT10, GMN10, MGT10, MRS2-11 | magnesium (Mg) transporter 10 | chr5:7627676-7630633 FORWARD LENGTH=459;; (*ITAG) Solyc11g066660.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49512562-49521520 transcript_region:SL2.40ch11:49512562..49521520- go_terms:GO:0016020 functional_description:"Magnesium transporter MRS2-1 (AHRD V1 ***- MRS21_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0016020 NbS00011366g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.75|1|0.66|0.5|4|410|383; (*GB) gi|225436389|ref|XP_002271598.1| (e_value=6e-158) PREDICTED: serine/threonine-protein kinase SRPK-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q96SB4|SRPK1_HUMAN (e_value=7e-71) SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2;; (*TAIR) AT3G44850.1 (e_value=1e-143) | Symbols: | Protein kinase superfamily protein | chr3:16374617-16376931 REVERSE LENGTH=534;; (*ITAG) Solyc11g066650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49502098-49511327 transcript_region:SL2.40ch11:49502098..49511327+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M1J8_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00031400g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.71|0.66|0.93|1|1|15|0|382; (*GB) gi|147792214|emb|CAN72983.1| (e_value=9e-135) hypothetical protein VITISV_009034 [Vitis vinifera];; (*SWP) sp|Q93YP9|ERDL4_ARATH (e_value=6e-133) Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1;; (*TAIR) AT1G19450.1 (e_value=4e-134) | Symbols: | Major facilitator superfamily protein | chr1:6731671-6734633 REVERSE LENGTH=488;; (*ITAG) Solyc02g085170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42731172-42736962 transcript_region:SL2.40ch02:42731172..42736962+ go_terms:GO:0015519 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00031400g0004.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|92 NbS00031400g0005.1 protein AED:0.07 eAED:0.07 QI:200|0.66|0.75|1|0|0.5|4|434|237; (*GB) gi|350537109|ref|NP_001234536.1| (e_value=1e-95) alpha/beta fold family protein [Solanum lycopersicum];; (*TAIR) AT4G36610.1 (e_value=4e-80) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17265545-17267274 REVERSE LENGTH=317;; (*ITAG) Solyc02g085180.2.1 (e_value=4e-110) genomic_reference:SL2.40ch02 gene_region:42736730-42739537 transcript_region:SL2.40ch02:42736730..42739537- go_terms:GO:0003824 functional_description:"Catalytic/ hydrolase (AHRD V1 **** B6TJ32_MAIZE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00031400g0002.1 protein AED:0.11 eAED:0.14 QI:0|0.5|0.66|1|0|0.33|3|638|367; (*GB) gi|147792215|emb|CAN72984.1| (e_value=8e-127) hypothetical protein VITISV_009035 [Vitis vinifera];; (*SWP) sp|Q92383|MAG1_SCHPO (e_value=7e-26) DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1;; (*TAIR) AT1G19480.2 (e_value=1e-113) | Symbols: | DNA glycosylase superfamily protein | chr1:6744520-6745653 FORWARD LENGTH=377;; (*ITAG) Solyc02g062720.2.1 (e_value=1e-156) genomic_reference:SL2.40ch02 gene_region:29049276-29058096 transcript_region:SL2.40ch02:29049276..29058096- go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase 1 (AHRD V1 ***- B6U6Y8_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00038404g0001.1 protein AED:0.33 eAED:0.33 QI:202|0.83|0.85|1|0|0.14|7|729|106; (*ITAG) Solyc08g013710.2.1 (e_value=1e-34) genomic_reference:SL2.40ch08 gene_region:3075879-3082648 transcript_region:SL2.40ch08:3075879..3082648- go_terms:GO:0008270 functional_description:"Zinc finger protein (AHRD V1 *--- B6UCK2_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00030768g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|82623403|gb|ABB87116.1| (e_value=5e-48) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=8e-41) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=6e-42) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=3e-51) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00030768g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.5|0.83|0.4|0.33|6|566|249; (*GB) gi|224139102|ref|XP_002326768.1| (e_value=1e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|P41127|RL131_ARATH (e_value=2e-119) 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1;; (*TAIR) AT3G49010.3 (e_value=1e-120) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=2e-117) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00051087g0004.1 protein AED:0.00 eAED:0.00 QI:357|1|0.66|1|0|0.66|3|0|129; (*GB) gi|225452200|ref|XP_002266771.1| (e_value=1e-77) PREDICTED: uncharacterized protein LOC100243984 [Vitis vinifera];; (*TAIR) AT5G40740.1 (e_value=6e-71) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741;; (*ITAG) Solyc02g093810.2.1 (e_value=5e-84) genomic_reference:SL2.40ch02 gene_region:49096622-49102063 transcript_region:SL2.40ch02:49096622..49102063- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 ***- Q9FM25_ARATH)"; NbS00002622g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0.25|1|0.66|0.75|4|167|245; (*GB) gi|297736705|emb|CBI25741.3| (e_value=8e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ATB4|TAD2B_ARATH (e_value=1e-75) Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1;; (*TAIR) AT4G16420.1 (e_value=1e-76) | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=487;; (*ITAG) Solyc05g054200.2.1 (e_value=2e-107) genomic_reference:SL2.40ch05 gene_region:63300322-63307891 transcript_region:SL2.40ch05:63300322..63307891+ go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B3LFL4_YEAS1); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00002622g0003.1 protein AED:0.42 eAED:0.52 QI:0|0|0|1|1|1|2|0|73; (*ITAG) Solyc05g054200.2.1 (e_value=2e-25) genomic_reference:SL2.40ch05 gene_region:63300322-63307891 transcript_region:SL2.40ch05:63300322..63307891+ go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B3LFL4_YEAS1); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00015803g0010.1 protein AED:0.07 eAED:0.07 QI:70|1|1|1|0|0.33|3|510|103; (*GB) gi|255566931|ref|XP_002524448.1| (e_value=1e-22) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g025690.2.1 (e_value=2e-33) genomic_reference:SL2.40ch03 gene_region:7496697-7497412 transcript_region:SL2.40ch03:7496697..7497412- functional_description:"Unknown Protein (AHRD V1)"; NbS00015803g0011.1 protein AED:0.20 eAED:0.25 QI:0|0.64|0.53|1|0.71|0.86|15|638|629; (*GB) gi|359493248|ref|XP_002266551.2| (e_value=0.0) PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial [Vitis vinifera];; (*SWP) sp|P21269|CCA1_YEAST (e_value=1e-40) CCA tRNA nucleotidyltransferase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCA1 PE=1 SV=1;; (*TAIR) AT1G22660.1 (e_value=7e-164) | Symbols: | Polynucleotide adenylyltransferase family protein | chr1:8017410-8021538 FORWARD LENGTH=605;; (*ITAG) Solyc11g018770.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9420136-9430649 transcript_region:SL2.40ch11:9420136..9430649+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *-*- CCA_LACPL); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00015803g0106.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|132 NbS00015803g0111.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|70 NbS00043268g0005.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|4|0|907; (*GB) gi|255552021|ref|XP_002517055.1| (e_value=2e-90) cation-transporting atpase plant, putative [Ricinus communis];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=4e-85) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=3e-86) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc07g065300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64340488-64343918 transcript_region:SL2.40ch07:64340488..64343918+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0005388 NbS00018486g0007.1 protein AED:0.25 eAED:0.25 QI:136|0.83|0.85|1|0.83|1|7|0|779; (*GB) gi|297735606|emb|CBI18100.3| (e_value=2e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CIM8|INT4_MOUSE (e_value=5e-20) Integrator complex subunit 4 OS=Mus musculus GN=Ints4 PE=2 SV=1;; (*TAIR) AT3G08800.1 (e_value=2e-105) | Symbols: | ARM repeat superfamily protein | chr3:2671148-2674910 FORWARD LENGTH=936;; (*ITAG) Solyc01g090250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75678137-75682660 transcript_region:SL2.40ch01:75678137..75682660+ go_terms:GO:0005488 functional_description:"Integrator complex subunit 4 (AHRD V1 *-*- C0HAD1_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00019413g0009.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|460; (*GB) gi|225456924|ref|XP_002278083.1| (e_value=6e-127) PREDICTED: probable spermidine synthase-like [Vitis vinifera];; (*TAIR) AT5G63100.1 (e_value=3e-110) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25314434-25315423 REVERSE LENGTH=329;; (*ITAG) Solyc06g071670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40534042-40535037 transcript_region:SL2.40ch06:40534042..40535037- functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 ***- Q9LU06_ARATH)"; NbS00019413g0008.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|76; (*ITAG) Solyc06g071670.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40534042-40535037 transcript_region:SL2.40ch06:40534042..40535037- functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 ***- Q9LU06_ARATH)"; NbS00002111g0004.1 protein AED:0.04 eAED:0.04 QI:132|1|1|1|1|1|2|348|1015; (*GB) gi|225445082|ref|XP_002280395.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G25930.1 (e_value=0.0) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc12g008500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1915241-1918466 transcript_region:SL2.40ch12:1915241..1918466+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00054164g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|419; (*GB) gi|356524336|ref|XP_003530785.1| (e_value=4e-153) PREDICTED: U-box domain-containing protein 14-like [Glycine max];; (*TAIR) AT3G20170.1 (e_value=6e-133) | Symbols: | ARM repeat superfamily protein | chr3:7041780-7043207 FORWARD LENGTH=475;; (*ITAG) Solyc12g015650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5649944-5651353 transcript_region:SL2.40ch12:5649944..5651353+ go_terms:GO:0005488 functional_description:"Armadillo repeat containing 4 (AHRD V1 **-- A8K906_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00002565g0005.1 protein AED:0.19 eAED:0.19 QI:434|0.75|0.66|1|0.75|0.77|9|0|1256; (*GB) gi|359481863|ref|XP_003632681.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257222 [Vitis vinifera];; (*TAIR) AT3G58050.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). | chr3:21492539-21497018 FORWARD LENGTH=1209;; (*ITAG) Solyc10g079010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59981121-59989416 transcript_region:SL2.40ch10:59981121..59989416+ go_terms:GO:0006265 functional_description:"Unknown Protein (AHRD V1)"; GO:0006265 NbS00019948g0012.1 protein AED:0.18 eAED:0.21 QI:41|1|0.33|1|0|0|3|0|451; (*GB) gi|359472602|ref|XP_003631173.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: glucan endo-1,3-beta-glucosidase 3-like [Vitis vinifera];; (*SWP) sp|Q9ZU91|E133_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2;; (*TAIR) AT2G01630.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:279541-281955 REVERSE LENGTH=501;; (*ITAG) Solyc04g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00019948g0011.1 protein AED:0.24 eAED:0.24 QI:331|0.8|0.83|1|1|1|6|265|399; (*GB) gi|359472840|ref|XP_003631201.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera];; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=1e-101) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3;; (*TAIR) AT1G70740.1 (e_value=9e-175) | Symbols: | Protein kinase superfamily protein | chr1:26673847-26675687 REVERSE LENGTH=425;; (*ITAG) Solyc04g007880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1559971-1564010 transcript_region:SL2.40ch04:1559971..1564010+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6T9K5_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00019948g0003.1 protein AED:0.20 eAED:0.26 QI:0|1|0|1|1|1|2|0|197; (*GB) gi|255573726|ref|XP_002527784.1| (e_value=3e-28) Histone H1, putative [Ricinus communis];; (*SWP) sp|Q00423|HMGYA_SOYBN (e_value=3e-19) HMG-Y-related protein A OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G14900.1 (e_value=2e-26) | Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204;; (*ITAG) Solyc04g007890.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:1565887-1566751 transcript_region:SL2.40ch04:1565887..1566751+ go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group protein (AHRD V1 *--- Q42461_CANGL); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00000838g0002.1 protein AED:0.06 eAED:0.06 QI:63|1|1|1|0.75|0.77|9|236|861; (*GB) gi|32454706|gb|AAP83134.1| (e_value=0.0) lipoxygenase [Nicotiana attenuata];; (*SWP) sp|Q41238|LOX16_SOLTU (e_value=0.0) Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum GN=LOX1.6 PE=1 SV=1;; (*TAIR) AT1G55020.1 (e_value=0.0) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc08g014000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3416213-3422793 transcript_region:SL2.40ch08:3416213..3422793- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43190_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00060234g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225451061|ref|XP_002262723.1| (e_value=3e-46) PREDICTED: uncharacterized protein LOC100255595 [Vitis vinifera];; (*TAIR) AT1G08940.1 (e_value=2e-48) | Symbols: | Phosphoglycerate mutase family protein | chr1:2877694-2879104 FORWARD LENGTH=281;; (*ITAG) Solyc01g098590.2.1 (e_value=6e-83) genomic_reference:SL2.40ch01 gene_region:80831727-80833048 transcript_region:SL2.40ch01:80831727..80833048+ go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00020854g0016.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.6|0.8|0.5|0.6|5|281|217; (*GB) gi|388505568|gb|AFK40850.1| (e_value=5e-71) unknown [Medicago truncatula];; (*SWP) sp|O65743|RL24_CICAR (e_value=9e-71) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT3G53020.1 (e_value=3e-71) | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e family protein | chr3:19660749-19661912 REVERSE LENGTH=163;; (*ITAG) Solyc09g008800.2.1 (e_value=2e-72) genomic_reference:SL2.40ch09 gene_region:2221397-2223878 transcript_region:SL2.40ch09:2221397..2223878+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0003735 NbS00020854g0017.1 protein AED:0.20 eAED:0.74 QI:8|0|0.33|1|0|0|3|0|82 NbS00020854g0018.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.2|1|0.5|0.4|5|0|584; (*GB) gi|225441054|ref|XP_002277869.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase SRPK1 [Vitis vinifera];; (*SWP) sp|Q96SB4|SRPK1_HUMAN (e_value=2e-63) SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2;; (*TAIR) AT3G53030.1 (e_value=0.0) | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529;; (*ITAG) Solyc10g085720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64132234-64136234 transcript_region:SL2.40ch10:64132234..64136234+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M1J8_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020854g0019.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0.25|0.75|0|0.25|4|0|283; (*GB) gi|255575471|ref|XP_002528637.1| (e_value=5e-155) ATPP2-A13, putative [Ricinus communis];; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=2e-143) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=2e-144) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc10g085490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63967869-63971471 transcript_region:SL2.40ch10:63967869..63971471- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00015320g0013.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|600; (*GB) gi|255539749|ref|XP_002510939.1| (e_value=0.0) Pectinesterase-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FHN5|PME59_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1;; (*TAIR) AT5G51490.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:20913680-20915606 REVERSE LENGTH=536;; (*ITAG) Solyc03g083840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47305647-47308373 transcript_region:SL2.40ch03:47305647..47308373+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9R9R4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00015320g0012.1 protein AED:0.18 eAED:0.19 QI:0|0.33|0|1|0|0.25|4|0|346; (*GB) gi|224136730|ref|XP_002322401.1| (e_value=1e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|O22149|PME17_ARATH (e_value=2e-112) Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2;; (*TAIR) AT2G45220.1 (e_value=2e-113) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc03g083870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47349896-47351825 transcript_region:SL2.40ch03:47349896..47351825+ go_terms:GO:0005618,GO:0016887,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9ICT1_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0016887,GO:0030599 NbS00015320g0011.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|0|0.33|3|0|181; (*GB) gi|224136730|ref|XP_002322401.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|O22149|PME17_ARATH (e_value=2e-39) Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2;; (*TAIR) AT2G45220.1 (e_value=2e-40) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc03g083870.2.1 (e_value=9e-51) genomic_reference:SL2.40ch03 gene_region:47349896-47351825 transcript_region:SL2.40ch03:47349896..47351825+ go_terms:GO:0005618,GO:0016887,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9ICT1_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0016887,GO:0030599 NbS00015320g0010.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|0|0.5|2|0|121; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc06g035740.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21562118-21565766 transcript_region:SL2.40ch06:21562118..21565766- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00053668g0005.1 protein AED:0.26 eAED:0.27 QI:134|1|0.75|1|0.66|0.75|4|0|166; (*GB) gi|297740749|emb|CBI30931.3| (e_value=2e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q68W88|RL14_RICTY (e_value=4e-46) 50S ribosomal protein L14 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rplN PE=3 SV=1;; (*TAIR) AT5G46160.2 (e_value=1e-70) | Symbols: | Ribosomal protein L14p/L23e family protein | chr5:18711456-18712341 REVERSE LENGTH=172;; (*ITAG) Solyc03g119380.1.1 (e_value=2e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:62059382-62059735 transcript_region:SL2.40ch03:62059382..62059735- go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- B6U1B6_MAIZE); contains Interpro domain(s) IPR005745 Ribosomal protein L14, bacterial-type "; GO:0003735,GO:0005515 NbS00047888g0005.1 protein AED:0.20 eAED:0.21 QI:0|0.78|0.53|0.93|0.78|0.86|15|779|1005; (*GB) gi|359496286|ref|XP_002271978.2| (e_value=2e-127) PREDICTED: uncharacterized protein LOC100259633 [Vitis vinifera];; (*TAIR) AT1G70620.3 (e_value=2e-37) | Symbols: | cyclin-related | chr1:26626634-26630777 FORWARD LENGTH=957;; (*ITAG) Solyc05g013490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6701173-6716534 transcript_region:SL2.40ch05:6701173..6716534+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034654g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|297851158|ref|XP_002893460.1| (e_value=9e-47) hypothetical protein ARALYDRAFT_890252 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C7F5|NTF2_ARATH (e_value=2e-46) Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1;; (*TAIR) AT1G27310.1 (e_value=1e-48) | Symbols: NTF2A | nuclear transport factor 2A | chr1:9484615-9485790 REVERSE LENGTH=122;; (*ITAG) Solyc02g094200.2.1 (e_value=3e-48) genomic_reference:SL2.40ch02 gene_region:49383545-49389074 transcript_region:SL2.40ch02:49383545..49389074+ go_terms:GO:0008320,GO:0008536 functional_description:"Nuclear transport factor 2 (AHRD V1 ***- B3TLR5_ELAGV); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0008320,GO:0008536 NbS00034654g0013.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0.5|2|0|95; (*GB) gi|224055749|ref|XP_002298634.1| (e_value=6e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08391.1 (e_value=5e-26) | Symbols: | Protein of unknown function (DUF 3339) | chr5:2699357-2699566 FORWARD LENGTH=69;; (*ITAG) Solyc02g094210.1.1 (e_value=8e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49389298-49389507 transcript_region:SL2.40ch02:49389298..49389507+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00034654g0009.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|63; (*ITAG) Solyc06g072070.1.1 (e_value=9e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40805954-40806163 transcript_region:SL2.40ch06:40805954..40806163+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00034654g0010.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|3|0|171; (*ITAG) Solyc00g171710.1.1 (e_value=2e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:18049090-18050010 transcript_region:SL2.40ch00:18049090..18050010+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00003478g0004.1 protein AED:0.23 eAED:0.23 QI:203|0.83|0.71|1|1|1|7|0|403; (*GB) gi|2494076|sp|P93338.1|GAPN_NICPL (e_value=0.0) RecName: Full=NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; AltName: Full=Glyceraldehyde-3-phosphate dehydrogenase [NADP(+)]; AltName: Full=Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase; AltName: Full=Triosephosphate dehydrogenase;; (*SWP) sp|P93338|GAPN_NICPL (e_value=0.0) NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1;; (*TAIR) AT2G24270.3 (e_value=0.0) | Symbols: ALDH11A3 | aldehyde dehydrogenase 11A3 | chr2:10327325-10329601 REVERSE LENGTH=496;; (*ITAG) Solyc07g005390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:296474-302315 transcript_region:SL2.40ch07:296474..302315+ go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** A7GLM2_BACCN); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00015858g0004.1 protein AED:0.06 eAED:0.06 QI:173|1|0.33|1|0.5|0.33|3|0|182; (*GB) gi|225461152|ref|XP_002282763.1| (e_value=6e-69) PREDICTED: 21.7 kDa class VI heat shock protein [Vitis vinifera];; (*SWP) sp|Q9FIT9|HS217_ARATH (e_value=1e-59) 21.7 kDa class VI heat shock protein OS=Arabidopsis thaliana GN=HSP21.7 PE=2 SV=1;; (*TAIR) AT5G54660.1 (e_value=8e-61) | Symbols: | HSP20-like chaperones superfamily protein | chr5:22203950-22204986 FORWARD LENGTH=192;; (*ITAG) Solyc07g064020.2.1 (e_value=3e-90) genomic_reference:SL2.40ch07 gene_region:63544571-63546405 transcript_region:SL2.40ch07:63544571..63546405+ functional_description:"class I heat shock protein 1 (AHRD V1 ***- B6TTC8_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00030010g0004.1 protein AED:0.00 eAED:0.31 QI:246|-1|0|1|-1|1|1|263|377; (*GB) gi|61651606|dbj|BAD91176.1| (e_value=5e-179) plastidic phosphate translocator-like protein1 [Mesembryanthemum crystallinum];; (*SWP) sp|Q9SUV2|PT432_ARATH (e_value=1e-179) Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=2 SV=1;; (*TAIR) AT4G32390.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr4:15636550-15637602 FORWARD LENGTH=350;; (*ITAG) Solyc12g006500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1011031-1012083 transcript_region:SL2.40ch12:1011031..1012083+ functional_description:"Phosphate translocator protein (AHRD V1 **-- A2PZC5_CHLRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00007709g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|466; (*GB) gi|20149064|gb|AAM12787.1| (e_value=0.0) putative anthocyanidine rhamnosyl-transferase [Capsicum annuum];; (*SWP) sp|Q940V3|U91A1_ARATH (e_value=4e-180) UDP-glycosyltransferase 91A1 OS=Arabidopsis thaliana GN=UGT91A1 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc00g227860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:19558891-19560303 transcript_region:SL2.40ch00:19558891..19560303- go_terms:GO:0008152,GO:0055114 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152,GO:0055114 NbS00007709g0104.1 protein AED:0.48 eAED:0.48 QI:352|0|0.25|0.25|1|1|4|0|83 NbS00007709g0107.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|1|2|0|91 NbS00007709g0108.1 protein AED:0.26 eAED:0.37 QI:57|0|0|1|0|0|2|0|112 NbS00007709g0207.1 protein AED:0.15 eAED:0.15 QI:391|0.42|0.62|1|0.28|0.12|8|256|437 NbS00013353g0005.1 protein AED:0.02 eAED:0.05 QI:8|0|0|1|0|0|2|0|390; (*GB) gi|225438051|ref|XP_002271836.1| (e_value=2e-41) PREDICTED: uncharacterized protein LOC100241175 [Vitis vinifera];; (*TAIR) AT1G21150.1 (e_value=3e-31) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc12g010650.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00039399g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|0|1|40|69; (*GB) gi|357441817|ref|XP_003591186.1| (e_value=2e-26) WD repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q94AI7|TPL_ARATH (e_value=8e-18) Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1;; (*TAIR) AT1G15750.4 (e_value=6e-19) | Symbols: WSIP1, TPL | Transducin family protein / WD-40 repeat family protein | chr1:5415086-5420359 REVERSE LENGTH=1131;; (*ITAG) Solyc01g100050.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00031259g0014.1 protein AED:0.04 eAED:0.04 QI:157|1|1|1|0.6|0.66|6|62|321; (*GB) gi|297746515|emb|CBI16571.3| (e_value=1e-94) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55540.1 (e_value=3e-77) | Symbols: | Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816;; (*ITAG) Solyc02g032490.2.1 (e_value=2e-102) genomic_reference:SL2.40ch02 gene_region:19222337-19224024 transcript_region:SL2.40ch02:19222337..19224024- functional_description:"Unknown Protein (AHRD V1)"; NbS00031259g0012.1 protein AED:0.11 eAED:0.16 QI:137|0.25|0.2|0.8|0.5|0.6|5|0|674; (*ITAG) Solyc02g032450.2.1 (e_value=7e-141) genomic_reference:SL2.40ch02 gene_region:19193309-19197354 transcript_region:SL2.40ch02:19193309..19197354- functional_description:"Unknown Protein (AHRD V1)"; NbS00031259g0015.1 protein AED:0.14 eAED:0.27 QI:0|0.66|0.14|1|0.66|0.42|7|0|451; (*GB) gi|255564792|ref|XP_002523390.1| (e_value=6e-20) nuclear pore complex protein nup153, putative [Ricinus communis];; (*TAIR) AT1G55540.1 (e_value=1e-13) | Symbols: | Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816;; (*ITAG) Solyc02g032400.1.1 (e_value=9e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:19125517-19126920 transcript_region:SL2.40ch02:19125517..19126920- functional_description:"Unknown Protein (AHRD V1)"; NbS00031259g0016.1 protein AED:0.20 eAED:0.30 QI:20|0.5|0|1|0.5|0.33|3|0|179; (*GB) gi|359478820|ref|XP_002283769.2| (e_value=9e-61) PREDICTED: uncharacterized protein LOC100245011 [Vitis vinifera];; (*TAIR) AT1G55540.1 (e_value=7e-56) | Symbols: | Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816;; (*ITAG) Solyc02g032460.1.1 (e_value=3e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:19198626-19200553 transcript_region:SL2.40ch02:19198626..19200553- functional_description:"Unknown Protein (AHRD V1)"; NbS00031259g0013.1 protein AED:0.29 eAED:0.42 QI:57|1|0.5|1|1|0.75|4|0|97; (*GB) gi|225435822|ref|XP_002285769.1| (e_value=5e-42) PREDICTED: uncharacterized protein LOC100250144 [Vitis vinifera];; (*TAIR) AT4G26410.1 (e_value=2e-40) | Symbols: | Uncharacterised conserved protein UCP022280 | chr4:13346760-13348791 FORWARD LENGTH=263;; (*ITAG) Solyc01g049960.2.1 (e_value=8e-59) genomic_reference:SL2.40ch01 gene_region:42725926-42727636 transcript_region:SL2.40ch01:42725926..42727636- functional_description:"Unknown Protein (AHRD V1)"; NbS00017282g0006.1 protein AED:0.01 eAED:0.01 QI:119|1|1|1|1|1|3|231|121; (*ITAG) Solyc11g007230.1.1 (e_value=4e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1635762-1639958 transcript_region:SL2.40ch11:1635762..1639958+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUH3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017282g0002.1 protein AED:0.10 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|156; (*GB) gi|166359608|gb|ABY86896.1| (e_value=7e-30) LEA-like protein [Eutrema halophilum];; (*SWP) sp|Q01417|PM1_SOYBN (e_value=3e-26) 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1;; (*TAIR) AT5G06760.1 (e_value=6e-30) | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 | chr5:2089754-2090313 REVERSE LENGTH=158;; (*ITAG) Solyc03g058330.2.1 (e_value=4e-21) genomic_reference:SL2.40ch03 gene_region:21222544-21223828 transcript_region:SL2.40ch03:21222544..21223828+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012954g0003.1 protein AED:0.09 eAED:0.09 QI:267|0.75|0.6|1|1|1|5|0|808; (*GB) gi|255584380|ref|XP_002532924.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9Y169|EXT2_DROME (e_value=3e-27) Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1;; (*TAIR) AT5G04500.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc11g007770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1988294-1993338 transcript_region:SL2.40ch11:1988294..1993338- go_terms:GO:0031227 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0031227 NbS00019661g0001.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|224057190|ref|XP_002299164.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g117840.2.1 (e_value=2e-32) genomic_reference:SL2.40ch03 gene_region:60899545-60902260 transcript_region:SL2.40ch03:60899545..60902260- functional_description:"Unknown Protein (AHRD V1)"; NbS00019661g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|356554415|ref|XP_003545542.1| (e_value=1e-113) PREDICTED: uncharacterized protein LOC100811524 [Glycine max];; (*TAIR) AT2G24530.1 (e_value=6e-95) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc06g068610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38916690-38917952 transcript_region:SL2.40ch06:38916690..38917952+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00019661g0004.1 protein AED:0.22 eAED:0.46 QI:0|0|0|1|0|0|4|0|146; (*GB) gi|351653936|ref|YP_004891662.1| (e_value=2e-37) unnamed protein product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=1e-36) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01000.1 (e_value=2e-21) | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436 FORWARD LENGTH=343;; (*ITAG) Solyc12g036550.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31729071-31729508 transcript_region:SL2.40ch12:31729071..31729508+ functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- D7P347_SYZCU); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00001552g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|5|0|701; (*GB) gi|225443568|ref|XP_002278092.1| (e_value=3e-145) PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6VMW0|Q8OMT_MENPI (e_value=1e-103) 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=5e-58) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc02g077530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37009970-37011385 transcript_region:SL2.40ch02:37009970..37011385+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HK00_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00020627g0007.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.83|0.85|7|260|907; (*GB) gi|225440418|ref|XP_002269448.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C1672.07 isoform 1 [Vitis vinifera];; (*SWP) sp|O14053|YC47_SCHPO (e_value=3e-177) Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=2 SV=1;; (*TAIR) AT4G04940.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:2511212-2517052 REVERSE LENGTH=910;; (*ITAG) Solyc01g087670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74360329-74366948 transcript_region:SL2.40ch01:74360329..74366948- go_terms:GO:0005515 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (AHRD V1 *--* GBB1_DANRE); contains Interpro domain(s) IPR007319 Small-subunit processome, Utp21 "; GO:0005515 NbS00032669g0005.1 protein AED:0.24 eAED:0.24 QI:316|1|0.75|1|1|1|4|0|353; (*GB) gi|356534653|ref|XP_003535867.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 49-like [Glycine max];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=8e-153) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.1 (e_value=5e-154) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=383;; (*ITAG) Solyc06g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3312201-3315959 transcript_region:SL2.40ch06:3312201..3315959- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase-2C (AHRD V1 ***- O82469_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00047687g0003.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|139; (*GB) gi|193290650|gb|ACF17633.1| (e_value=3e-88) putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Capsicum annuum];; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=3e-54) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=2e-55) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc09g013080.2.1 (e_value=2e-90) genomic_reference:SL2.40ch09 gene_region:5484876-5491347 transcript_region:SL2.40ch09:5484876..5491347- go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- B7KJL9_CYAP7); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00009783g0003.1 protein AED:0.26 eAED:0.34 QI:0|0|0|1|1|1|2|0|90; (*ITAG) Solyc06g069150.1.1 (e_value=3e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39319761-39320498 transcript_region:SL2.40ch06:39319761..39320498+ functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 *-*- Q9LUA5_ARATH)"; NbS00047263g0004.1 protein AED:0.07 eAED:0.07 QI:36|0.75|0.6|0.8|0.5|0.6|5|0|151; (*GB) gi|356527204|ref|XP_003532202.1| (e_value=2e-100) PREDICTED: THO complex subunit 3-like [Glycine max];; (*SWP) sp|Q8VE80|THOC3_MOUSE (e_value=1e-42) THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1;; (*TAIR) AT5G56130.1 (e_value=4e-100) | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like superfamily protein | chr5:22722755-22725065 REVERSE LENGTH=315;; (*ITAG) Solyc07g066060.2.1 (e_value=1e-106) genomic_reference:SL2.40ch07 gene_region:64813613-64819322 transcript_region:SL2.40ch07:64813613..64819322- go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00038968g0008.1 protein AED:0.03 eAED:0.03 QI:479|0.75|0.8|1|1|1|5|36|496; (*GB) gi|225459314|ref|XP_002285793.1| (e_value=0.0) PREDICTED: sugar transport protein 5 [Vitis vinifera];; (*SWP) sp|Q93Y91|STP5_ARATH (e_value=0.0) Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1;; (*TAIR) AT1G34580.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:12660631-12663553 FORWARD LENGTH=506;; (*ITAG) Solyc04g074070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57673134-57675570 transcript_region:SL2.40ch04:57673134..57675570+ go_terms:GO:0005358 functional_description:"High-affinity glucose transporter (AHRD V1 **** HGT1_KLULA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358 NbS00038968g0113.1 protein AED:0.01 eAED:0.01 QI:91|1|1|1|1|1|2|222|207 NbS00038968g0114.1 protein AED:0.16 eAED:0.32 QI:0|1|0|1|1|1|2|0|270 NbS00038968g0116.1 protein AED:0.06 eAED:0.06 QI:518|0.94|1|1|0.88|0.94|18|351|868 NbS00038968g0119.1 protein AED:0.25 eAED:0.25 QI:115|0.93|0.87|0.93|0.8|0.68|16|0|833 NbS00051291g0005.1 protein AED:0.22 eAED:0.23 QI:161|0.77|0.7|1|0.66|0.7|10|0|565; (*GB) gi|356569368|ref|XP_003552874.1| (e_value=4e-134) PREDICTED: actin-related protein 5-like [Glycine max];; (*SWP) sp|Q940Z2|ARP5_ARATH (e_value=2e-125) Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2;; (*TAIR) AT3G12380.1 (e_value=2e-126) | Symbols: ATARP5, ARP5 | actin-related protein 5 | chr3:3938309-3941785 REVERSE LENGTH=724;; (*ITAG) Solyc06g043170.2.1 (e_value=3e-154) genomic_reference:SL2.40ch06 gene_region:26145427-26158030 transcript_region:SL2.40ch06:26145427..26158030- go_terms:GO:0043140 functional_description:"Actin family protein (AHRD V1 ***- C5P4B4_COCP7); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0043140 NbS00000511g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|271; (*GB) gi|356497137|ref|XP_003517419.1| (e_value=2e-26) PREDICTED: zinc finger protein ZAT9-like [Glycine max];; (*ITAG) Solyc06g060740.1.1 (e_value=3e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35159927-35160847 transcript_region:SL2.40ch06:35159927..35160847+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LRS3_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00000511g0007.1 protein AED:0.43 eAED:0.52 QI:0|0|0.16|1|0.4|0.66|6|231|180 NbS00026568g0005.1 protein AED:0.00 eAED:0.00 QI:162|1|1|1|1|1|2|218|324; (*GB) gi|224087006|ref|XP_002308027.1| (e_value=3e-172) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41810.1 (e_value=5e-163) | Symbols: | Protein of unknown function, DUF642 | chr2:17439414-17441296 REVERSE LENGTH=370;; (*ITAG) Solyc04g015620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5924562-5927065 transcript_region:SL2.40ch04:5924562..5927065+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00026568g0006.1 protein AED:0.09 eAED:0.19 QI:14|0|0|1|0|0|3|0|453; (*GB) gi|225441815|ref|XP_002277987.1| (e_value=2e-85) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=3e-27) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G14460.1 (e_value=6e-26) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc04g015630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5927164-5929199 transcript_region:SL2.40ch04:5927164..5929199- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00023055g0006.1 protein AED:0.15 eAED:0.21 QI:118|0.5|0.42|1|0|0|7|0|302; (*GB) gi|225462729|ref|XP_002267886.1| (e_value=6e-104) PREDICTED: bidirectional sugar transporter SWEET3 [Vitis vinifera];; (*SWP) sp|Q6NQN5|SWET3_ARATH (e_value=2e-90) Bidirectional sugar transporter SWEET3 OS=Arabidopsis thaliana GN=SWEET3 PE=2 SV=1;; (*TAIR) AT5G53190.1 (e_value=1e-91) | Symbols: SWEET3, AtSWEET3 | Nodulin MtN3 family protein | chr5:21572417-21574284 REVERSE LENGTH=263;; (*ITAG) Solyc03g007360.2.1 (e_value=2e-140) genomic_reference:SL2.40ch03 gene_region:1910345-1912252 transcript_region:SL2.40ch03:1910345..1912252- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7MSV3_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00023055g0003.1 protein AED:0.16 eAED:0.23 QI:0|0|0|0.83|1|1|6|0|574; (*GB) gi|147836314|emb|CAN59994.1| (e_value=0.0) hypothetical protein VITISV_012660 [Vitis vinifera];; (*SWP) sp|Q56XI1|PPR25_ARATH (e_value=2e-82) Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2;; (*TAIR) AT1G09410.1 (e_value=2e-83) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:3035443-3037560 FORWARD LENGTH=705;; (*ITAG) Solyc03g007350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1907101-1909338 transcript_region:SL2.40ch03:1907101..1909338+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00016422g0104.1 protein AED:0.30 eAED:0.35 QI:0|0.37|0.55|1|0.37|0.33|9|157|264 NbS00025964g0004.1 protein AED:0.22 eAED:0.34 QI:0|0|0.33|1|0|0|3|0|146; (*GB) gi|147810055|emb|CAN78278.1| (e_value=1e-20) hypothetical protein VITISV_021647 [Vitis vinifera];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=3e-19) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=3e-20) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079440.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:61536285-61539279 transcript_region:SL2.40ch04:61536285..61539279- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00014118g0009.1 protein AED:0.19 eAED:0.26 QI:0|0.75|0.66|1|0.5|0.55|9|142|221; (*GB) gi|224126545|ref|XP_002319864.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT1G33500.1 (e_value=6e-33) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:12152774-12154680 FORWARD LENGTH=276;; (*ITAG) Solyc11g045100.1.1 (e_value=7e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:36633140-36638389 transcript_region:SL2.40ch11:36633140..36638389+ go_terms:GO:0031177 functional_description:"Unknown Protein (AHRD V1)"; GO:0031177 NbS00014118g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.4|1|1|5|0|559; (*GB) gi|302747570|gb|ADL63266.1| (e_value=2e-135) Atp1 [Paeonia sp. Qiu 95090];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-134) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=2e-126) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc11g045110.1.1 (e_value=4e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36639062-36646330 transcript_region:SL2.40ch11:36639062..36646330- go_terms:GO:0005923,GO:0005985,GO:0009058 functional_description:"Sucrose-phosphate synthase 1 (AHRD V1 ***- Q5EEP9_VITVI); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0005923,GO:0005985,GO:0009058 NbS00014118g0008.1 protein AED:0.50 eAED:0.69 QI:0|0|0|1|0|0|2|0|73 NbS00014118g0010.1 protein AED:0.54 eAED:0.67 QI:88|0|0|1|0|0|2|0|67; (*ITAG) Solyc11g039380.1.1 (e_value=3e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:23177089-23177427 transcript_region:SL2.40ch11:23177089..23177427- functional_description:"Unknown Protein (AHRD V1)"; NbS00016896g0012.1 protein AED:0.01 eAED:0.01 QI:274|1|1|1|0.75|0.6|5|272|426; (*GB) gi|225436701|ref|XP_002263669.1| (e_value=2e-178) PREDICTED: WD repeat domain phosphoinositide-interacting protein 3 [Vitis vinifera];; (*SWP) sp|Q68F45|WIPI3_XENLA (e_value=2e-72) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus laevis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G62770.1 (e_value=8e-170) | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23218858-23221110 REVERSE LENGTH=425;; (*ITAG) Solyc08g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:775557-780071 transcript_region:SL2.40ch08:775557..780071+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00016896g0010.1 protein AED:0.01 eAED:0.01 QI:148|1|0.66|1|1|1|3|0|325; (*GB) gi|356518298|ref|XP_003527816.1| (e_value=6e-119) PREDICTED: NAC domain-containing protein 100-like [Glycine max];; (*SWP) sp|O04017|NAC98_ARATH (e_value=1e-80) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT2G24430.2 (e_value=2e-103) | Symbols: ANAC039 | NAC domain containing protein 38 | chr2:10383517-10386386 REVERSE LENGTH=316;; (*ITAG) Solyc08g006020.2.1 (e_value=6e-124) genomic_reference:SL2.40ch08 gene_region:784730-788036 transcript_region:SL2.40ch08:784730..788036+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00016896g0011.1 protein AED:0.19 eAED:0.19 QI:41|0.8|1|1|0.6|0.63|11|155|353; (*GB) gi|224115694|ref|XP_002332119.1| (e_value=6e-104) predicted protein [Populus trichocarpa];; (*TAIR) AT2G24420.2 (e_value=2e-83) | Symbols: | DNA repair ATPase-related | chr2:10380147-10382624 FORWARD LENGTH=440;; (*ITAG) Solyc08g006030.2.1 (e_value=1e-145) genomic_reference:SL2.40ch08 gene_region:790657-797712 transcript_region:SL2.40ch08:790657..797712- functional_description:"Unknown Protein (AHRD V1)"; NbS00004676g0010.1 protein AED:0.37 eAED:0.40 QI:35|0.5|0|1|0|0.33|3|0|303; (*GB) gi|224123698|ref|XP_002330186.1| (e_value=1e-113) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56310.1 (e_value=2e-89) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:21082863-21085564 FORWARD LENGTH=589;; (*ITAG) Solyc01g100270.2.1 (e_value=1e-171) genomic_reference:SL2.40ch01 gene_region:82098989-82112133 transcript_region:SL2.40ch01:82098989..82112133+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease family protein (AHRD V1 *-*- Q23B12_TETTH); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00004676g0003.1 protein AED:0.33 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|157 NbS00004676g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.8|0.5|1|1|0.83|6|267|234; (*GB) gi|255542852|ref|XP_002512489.1| (e_value=3e-94) 3-5 exonuclease, putative [Ricinus communis];; (*TAIR) AT1G56310.1 (e_value=1e-74) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:21082863-21085564 FORWARD LENGTH=589;; (*ITAG) Solyc01g100270.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:82098989-82112133 transcript_region:SL2.40ch01:82098989..82112133+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease family protein (AHRD V1 *-*- Q23B12_TETTH); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00007494g0010.1 protein AED:0.02 eAED:0.02 QI:137|1|0.5|1|1|0.5|2|0|172; (*ITAG) Solyc01g100440.1.1 (e_value=5e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82221086-82224114 transcript_region:SL2.40ch01:82221086..82224114- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00007494g0001.1 protein AED:0.24 eAED:0.24 QI:445|0.66|0.75|1|0|0|4|1011|399; (*GB) gi|224123734|ref|XP_002330195.1| (e_value=5e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|O04504|PPR27_ARATH (e_value=1e-152) Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1;; (*TAIR) AT1G09820.1 (e_value=1e-153) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3190594-3192414 REVERSE LENGTH=606;; (*ITAG) Solyc01g100450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82236040-82237857 transcript_region:SL2.40ch01:82236040..82237857+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJU9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039143g0011.1 protein AED:0.26 eAED:0.26 QI:75|1|0.85|1|0.33|0.42|7|0|391; (*GB) gi|224102575|ref|XP_002312731.1| (e_value=3e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944H2|AB12I_ARATH (e_value=1e-143) Protein ABCI12, chloroplastic OS=Arabidopsis thaliana GN=ABCI12 PE=1 SV=1;; (*TAIR) AT3G21580.1 (e_value=9e-145) | Symbols: | cobalt ion transmembrane transporters | chr3:7602009-7603720 REVERSE LENGTH=391;; (*ITAG) Solyc01g080300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72047959-72052509 transcript_region:SL2.40ch01:72047959..72052509+ go_terms:GO:0009236 functional_description:"Cobalt transport protein (AHRD V1 ***- Q4C386_CROWT); contains Interpro domain(s) IPR003339 Cobalt transport protein "; GO:0009236 NbS00039143g0012.1 protein AED:0.31 eAED:0.36 QI:55|0|0|0.28|0.5|0.42|7|0|297; (*GB) gi|113205399|gb|AAU90302.2| (e_value=4e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-47) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00012199g0013.1 protein AED:0.19 eAED:0.19 QI:625|1|1|1|1|0.88|9|1782|365; (*GB) gi|297745330|emb|CBI40410.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46547|PIP_AERSO (e_value=5e-81) Proline iminopeptidase OS=Aeromonas sobria GN=pip PE=1 SV=3;; (*TAIR) AT3G61540.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22773399-22775699 FORWARD LENGTH=515;; (*ITAG) Solyc01g095120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78267784-78273618 transcript_region:SL2.40ch01:78267784..78273618+ go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold (AHRD V1 **-- A4FFA2_SACEN); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0006508 NbS00012199g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|225453925|ref|XP_002273719.1| (e_value=7e-29) PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Vitis vinifera];; (*SWP) sp|Q9LPC4|PPR1_ARATH (e_value=4e-27) Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1;; (*TAIR) AT1G01970.1 (e_value=3e-28) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:338538-339905 FORWARD LENGTH=409;; (*ITAG) Solyc01g091450.2.1 (e_value=4e-35) genomic_reference:SL2.40ch01 gene_region:76821359-76826601 transcript_region:SL2.40ch01:76821359..76826601- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012199g0009.1 protein AED:0.12 eAED:0.12 QI:229|0.87|0.77|1|0.37|0.66|9|0|252; (*GB) gi|147841417|emb|CAN73361.1| (e_value=3e-72) hypothetical protein VITISV_006165 [Vitis vinifera];; (*TAIR) AT5G41580.1 (e_value=1e-31) | Symbols: | RING/U-box superfamily protein | chr5:16626563-16630659 REVERSE LENGTH=760;; (*ITAG) Solyc01g095130.2.1 (e_value=9e-131) genomic_reference:SL2.40ch01 gene_region:78274721-78279871 transcript_region:SL2.40ch01:78274721..78279871- functional_description:"Transcription factor (AHRD V1 ***- O04238_VICFA)"; NbS00008155g0014.1 protein AED:0.11 eAED:0.11 QI:154|1|1|1|1|1|7|155|579; (*GB) gi|225456390|ref|XP_002280389.1| (e_value=1e-155) PREDICTED: SWI/SNF complex subunit SWI3A [Vitis vinifera];; (*SWP) sp|Q8W475|SWI3A_ARATH (e_value=4e-107) SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1;; (*TAIR) AT2G47620.1 (e_value=3e-108) | Symbols: ATSWI3A, CHB1, SWI3A | SWITCH/sucrose nonfermenting 3A | chr2:19532034-19534251 FORWARD LENGTH=512;; (*ITAG) Solyc03g097450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53219323-53230371 transcript_region:SL2.40ch03:53219323..53230371- go_terms:GO:0003677 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_HUMAN); contains Interpro domain(s) IPR007526 SWIRM "; GO:0003677 NbS00008155g0013.1 protein AED:0.22 eAED:0.22 QI:300|0.83|0.76|1|0.41|0.61|13|0|674; (*GB) gi|359495046|ref|XP_002265081.2| (e_value=0.0) PREDICTED: integrator complex subunit 9 homolog [Vitis vinifera];; (*SWP) sp|A7SBF0|INT9_NEMVE (e_value=2e-49) Integrator complex subunit 9 homolog OS=Nematostella vectensis GN=ints9 PE=3 SV=1;; (*TAIR) AT3G07530.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | chr3:2400793-2404280 FORWARD LENGTH=699;; (*ITAG) Solyc03g097460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53235916-53245340 transcript_region:SL2.40ch03:53235916..53245340- functional_description:"Integrator complex subunit 9 (AHRD V1 ***- B0WES8_CULQU)"; NbS00008155g0015.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.55|0.88|0.75|0.77|9|426|447; (*GB) gi|193290706|gb|ACF17661.1| (e_value=0.0) putative 3-oxoacyl-(acyl-carrier-protein) synthase III [Capsicum annuum];; (*SWP) sp|P49244|FABH1_CUPWR (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic OS=Cuphea wrightii GN=KAS3A PE=2 SV=2;; (*TAIR) AT1G62640.2 (e_value=0.0) | Symbols: KAS III | 3-ketoacyl-acyl carrier protein synthase III | chr1:23192502-23194737 FORWARD LENGTH=404;; (*ITAG) Solyc03g097470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53248143-53261349 transcript_region:SL2.40ch03:53248143..53261349- go_terms:GO:0008137 functional_description:"3-oxoacyl- (AHRD V1 ***- D5A3B9_SPIPL); contains Interpro domain(s) IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH) "; GO:0008137 NbS00000094g0006.1 protein AED:0.10 eAED:0.10 QI:362|0.91|0.92|1|0.58|0.61|13|327|796; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=0.0) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=0.0) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=0.0) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc11g011500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4549309-4556010 transcript_region:SL2.40ch11:4549309..4556010+ go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00000094g0005.1 protein AED:0.03 eAED:0.03 QI:507|1|1|1|0|0|2|253|230; (*ITAG) Solyc09g005480.2.1 (e_value=8e-39) genomic_reference:SL2.40ch09 gene_region:332487-334110 transcript_region:SL2.40ch09:332487..334110- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00026070g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|34452115|gb|AAQ72514.1| (e_value=6e-27) MADS-box protein 17 [Petunia x hybrida];; (*SWP) sp|Q8RU31|MAD21_ORYSJ (e_value=2e-22) MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1;; (*TAIR) AT4G09960.1 (e_value=1e-22) | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236713-6239409 REVERSE LENGTH=230;; (*ITAG) Solyc05g015730.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:11842331-11842573 transcript_region:SL2.40ch05:11842331..11842573- go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D3U2G9_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00026070g0014.1 protein AED:0.39 eAED:0.39 QI:2|1|0.75|1|0.66|0.75|4|0|145; (*GB) gi|217075350|gb|ACJ86035.1| (e_value=4e-69) unknown [Medicago truncatula];; (*SWP) sp|A6QPY8|PIN4_BOVIN (e_value=2e-24) Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1;; (*TAIR) AT1G26550.1 (e_value=8e-70) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:9171800-9172716 FORWARD LENGTH=142;; (*ITAG) Solyc12g036200.1.1 (e_value=4e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:29804400-29807477 transcript_region:SL2.40ch12:29804400..29807477+ go_terms:GO:0016853 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q2F670_BOMMO); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0016853 NbS00026070g0010.1 protein AED:0.49 eAED:0.56 QI:27|0.16|0.28|0.57|0.66|0.71|7|640|304 NbS00026070g0016.1 protein AED:0.00 eAED:0.02 QI:0|0|0|1|0|0|3|0|574; (*GB) gi|225457363|ref|XP_002284788.1| (e_value=0.0) PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9M5Q1|FUT1_PEA (e_value=0.0) Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1;; (*TAIR) AT2G03220.1 (e_value=0.0) | Symbols: FT1, ATFUT1, ATFT1, MUR2 | fucosyltransferase 1 | chr2:970401-972353 REVERSE LENGTH=558;; (*ITAG) Solyc07g047920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56451952-56454673 transcript_region:SL2.40ch07:56451952..56454673- go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00026070g0015.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|108; (*GB) gi|57013887|ref|YP_173361.1| (e_value=9e-18) hypothetical protein NitaMp013 [Nicotiana tabacum]; NbS00016288g0004.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|1|1|2|0|317; (*GB) gi|255566921|ref|XP_002524443.1| (e_value=4e-99) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q94C25|Y5005_ARATH (e_value=5e-81) Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1;; (*TAIR) AT5G20050.1 (e_value=4e-82) | Symbols: | Protein kinase superfamily protein | chr5:6774381-6775739 FORWARD LENGTH=452;; (*ITAG) Solyc06g008890.2.1 (e_value=8e-127) genomic_reference:SL2.40ch06 gene_region:2833412-2835080 transcript_region:SL2.40ch06:2833412..2835080+ go_terms:GO:0005515,GO:0004674 functional_description:"S-receptor kinase -like protein (AHRD V1 **** O49361_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016288g0005.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.33|1|1|3|0|84; (*GB) gi|56542445|gb|AAV92887.1| (e_value=1e-25) Avr9/Cf-9 rapidly elicited protein 11, partial [Nicotiana tabacum]; NbS00047006g0003.1 protein AED:0.21 eAED:0.23 QI:148|0.85|0.75|0.87|0.28|0.25|8|208|193; (*GB) gi|255570045|ref|XP_002525985.1| (e_value=2e-83) calcium ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q9CAB8|PXG5_ARATH (e_value=4e-79) Probable peroxygenase 5 OS=Arabidopsis thaliana GN=PXG5 PE=2 SV=1;; (*TAIR) AT1G70680.1 (e_value=3e-80) | Symbols: | Caleosin-related family protein | chr1:26647341-26648541 FORWARD LENGTH=192;; (*ITAG) Solyc04g007960.2.1 (e_value=3e-116) genomic_reference:SL2.40ch04 gene_region:1614160-1618540 transcript_region:SL2.40ch04:1614160..1618540- go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00047006g0006.1 protein AED:0.38 eAED:0.39 QI:0|0.4|0.16|1|0.6|0.33|6|376|250; (*GB) gi|224108293|ref|XP_002314791.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAB6|UEV1B_ARATH (e_value=1e-74) Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1;; (*TAIR) AT1G70660.1 (e_value=1e-75) | Symbols: MMZ2, UEV1B | MMS ZWEI homologue 2 | chr1:26640755-26641949 FORWARD LENGTH=159;; (*ITAG) Solyc04g007970.2.1 (e_value=4e-97) genomic_reference:SL2.40ch04 gene_region:1622530-1631005 transcript_region:SL2.40ch04:1622530..1631005- go_terms:GO:0042803 functional_description:"Ubiquitin-conjugating enzyme E2 variant 1 (AHRD V1 ***- B6T4J0_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0042803 NbS00047006g0008.1 protein AED:0.12 eAED:0.39 QI:0|0|0|0.5|0|0|2|0|152; (*GB) gi|268638403|gb|ACZ17543.1| (e_value=1e-39) oxidoreductase [Capsicum annuum];; (*SWP) sp|D4N502|DIOX3_PAPSO (e_value=5e-17) Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1;; (*TAIR) AT5G05600.1 (e_value=9e-30) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc10g076660.1.1 (e_value=7e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58933875-58936555 transcript_region:SL2.40ch10:58933875..58936555+ go_terms:GO:0016491,GO:0055114 functional_description:"Anthocyanidin synthase (AHRD V1 **-- Q2QCX4_GOSHI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00040671g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.9|0.90|11|253|341; (*GB) gi|156070786|gb|ABU45199.1| (e_value=5e-150) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|P42774|GBF1_ARATH (e_value=2e-79) G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2;; (*TAIR) AT4G36730.2 (e_value=1e-81) | Symbols: GBF1 | G-box binding factor 1 | chr4:17309850-17311752 REVERSE LENGTH=313;; (*ITAG) Solyc02g062950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29468111-29477847 transcript_region:SL2.40ch02:29468111..29477847- go_terms:GO:0005515,GO:0043565 functional_description:"G-box binding factor (AHRD V1 **** Q43449_SOYBN); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0005515,GO:0043565 NbS00040671g0004.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.66|1|1|3|0|64 NbS00021082g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|225434526|ref|XP_002278655.1| (e_value=6e-43) PREDICTED: RING-H2 finger protein ATL5 [Vitis vinifera];; (*SWP) sp|Q9LUZ9|ATL63_ARATH (e_value=3e-22) RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2 SV=1;; (*TAIR) AT5G58580.1 (e_value=2e-23) | Symbols: ATL63, TL63 | TOXICOS EN LEVADURA 63 | chr5:23676906-23677832 REVERSE LENGTH=308;; (*ITAG) Solyc06g007230.1.1 (e_value=2e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:1294562-1295083 transcript_region:SL2.40ch06:1294562..1295083+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021082g0013.1 protein AED:0.26 eAED:0.26 QI:38|1|0.8|1|0.5|0.6|5|880|98; (*GB) gi|356569515|ref|XP_003552945.1| (e_value=1e-52) PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like [Glycine max];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=2e-52) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=2e-53) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=6e-55) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00021082g0014.1 protein AED:0.40 eAED:0.40 QI:0|0.16|0|0.28|1|1|7|0|202; (*GB) gi|3309583|gb|AAC26113.1| (e_value=9e-44) fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Solanum tuberosum];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=1e-42) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=1e-43) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00021082g0004.1 protein AED:0.70 eAED:0.70 QI:0|0|0.16|0.5|1|1|6|0|169; (*GB) gi|3309583|gb|AAC26113.1| (e_value=1e-60) fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Solanum tuberosum];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=2e-58) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=1e-59) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=9e-62) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00018589g0006.1 protein AED:0.08 eAED:0.08 QI:169|1|1|1|0.6|0.75|16|296|505; (*GB) gi|255575202|ref|XP_002528505.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q55E13|ZPR1_DICDI (e_value=3e-108) Zinc finger protein ZPR1 homolog OS=Dictyostelium discoideum GN=zpr1 PE=3 SV=1;; (*TAIR) AT5G22480.1 (e_value=0.0) | Symbols: | ZPR1 zinc-finger domain protein | chr5:7451643-7456168 REVERSE LENGTH=493;; (*ITAG) Solyc02g069120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33651629-33659919 transcript_region:SL2.40ch02:33651629..33659919- go_terms:GO:0042802 functional_description:"Zinc-finger protein ZPR1 (AHRD V1 ***- C1BIY5_OSMMO); contains Interpro domain(s) IPR004457 Zinc finger, ZPR1-type "; GO:0042802 NbS00018589g0007.1 protein AED:0.20 eAED:0.20 QI:378|0.87|0.88|1|0.87|0.88|9|297|335; (*GB) gi|38639325|gb|AAR25800.1| (e_value=0.0) cathepsin B-like cysteine proteinase [Solanum tuberosum];; (*SWP) sp|Q4R5M2|CATB_MACFA (e_value=1e-69) Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1;; (*TAIR) AT1G02305.1 (e_value=6e-161) | Symbols: | Cysteine proteinases superfamily protein | chr1:455816-457974 FORWARD LENGTH=362;; (*ITAG) Solyc02g069100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33641728-33645614 transcript_region:SL2.40ch02:33641728..33645614- go_terms:GO:0006508,GO:0050790,GO:0008234 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B "; GO:0006508,GO:0050790,GO:0008234 NbS00003614g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|388; (*GB) gi|359483464|ref|XP_003632962.1| (e_value=2e-164) PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84JR3|PP334_ARATH (e_value=2e-134) Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1;; (*TAIR) AT4G21705.1 (e_value=2e-135) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492;; (*ITAG) Solyc02g078350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37647670-37649730 transcript_region:SL2.40ch02:37647670..37649730+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003614g0014.1 protein AED:0.11 eAED:0.11 QI:57|0.94|0.9|1|0.94|0.95|20|0|765; (*GB) gi|359480159|ref|XP_002276396.2| (e_value=0.0) PREDICTED: protein fat-free homolog [Vitis vinifera];; (*SWP) sp|Q54KG3|FFR_DICDI (e_value=1e-49) Protein fat-free homolog OS=Dictyostelium discoideum GN=ffr PE=3 SV=1;; (*TAIR) AT4G02030.1 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780;; (*ITAG) Solyc01g079490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71038694-71056506 transcript_region:SL2.40ch01:71038694..71056506+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0042802 NbS00003614g0010.1 protein AED:0.12 eAED:0.13 QI:0|0.68|0.70|0.88|0.81|0.82|17|399|723; (*GB) gi|255548461|ref|XP_002515287.1| (e_value=0.0) DNA replication licensing factor MCM7, putative [Ricinus communis];; (*SWP) sp|P43299|PROL_ARATH (e_value=0.0) Protein PROLIFERA OS=Arabidopsis thaliana GN=PRL PE=1 SV=2;; (*TAIR) AT4G02060.2 (e_value=0.0) | Symbols: PRL | Minichromosome maintenance (MCM2/3/5) family protein | chr4:901484-905297 FORWARD LENGTH=716;; (*ITAG) Solyc01g079500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71059737-71065826 transcript_region:SL2.40ch01:71059737..71065826+ go_terms:GO:0043140 functional_description:"DNA replication licensing factor (AHRD V1 **** Q2U020_ASPOR); contains Interpro domain(s) IPR008050 MCM protein 7 "; GO:0043140 NbS00028493g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|0.75|1|1|4|0|126; (*GB) gi|350534510|ref|NP_001234144.1| (e_value=2e-49) molybdenum cofactor sulfurase [Solanum lycopersicum];; (*SWP) sp|Q8LGM7|MOCOS_SOLLC (e_value=5e-51) Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1;; (*TAIR) AT1G16540.1 (e_value=1e-33) | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybdenum cofactor sulfurase (LOS5) (ABA3) | chr1:5659465-5665201 FORWARD LENGTH=819;; (*ITAG) Solyc07g066480.2.1 (e_value=3e-52) genomic_reference:SL2.40ch07 gene_region:65118760-65130514 transcript_region:SL2.40ch07:65118760..65130514- go_terms:GO:0008265 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 **** D3BH81_POLPA); contains Interpro domain(s) IPR005302 Molybdenum cofactor sulfurase, C-terminal "; GO:0008265 NbS00028493g0010.1 protein AED:0.36 eAED:0.49 QI:0|0.5|0.22|0.77|0.62|0.66|9|0|296; (*GB) gi|350534510|ref|NP_001234144.1| (e_value=0.0) molybdenum cofactor sulfurase [Solanum lycopersicum];; (*SWP) sp|Q8LGM7|MOCOS_SOLLC (e_value=0.0) Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1;; (*TAIR) AT1G16540.1 (e_value=1e-122) | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybdenum cofactor sulfurase (LOS5) (ABA3) | chr1:5659465-5665201 FORWARD LENGTH=819;; (*ITAG) Solyc07g066480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65118760-65130514 transcript_region:SL2.40ch07:65118760..65130514- go_terms:GO:0008265 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 **** D3BH81_POLPA); contains Interpro domain(s) IPR005302 Molybdenum cofactor sulfurase, C-terminal "; GO:0008265 NbS00006093g0005.1 protein AED:0.33 eAED:0.41 QI:0|0|0|0.6|0.25|0.4|5|0|221; (*GB) gi|356574036|ref|XP_003555159.1| (e_value=4e-50) PREDICTED: lysine histidine transporter 1-like [Glycine max];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=7e-48) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.2 (e_value=5e-49) | Symbols: | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=445;; (*ITAG) Solyc02g093860.2.1 (e_value=2e-49) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00006093g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|33|281; (*GB) gi|225452173|ref|XP_002270738.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100249110 [Vitis vinifera];; (*TAIR) AT5G40800.1 (e_value=6e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16334810-16335628 REVERSE LENGTH=272;; (*ITAG) Solyc02g068030.1.1 (e_value=5e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32661807-32662649 transcript_region:SL2.40ch02:32661807..32662649- functional_description:"Unknown Protein (AHRD V1)"; NbS00050860g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|23|64; (*GB) gi|359484787|ref|XP_003633162.1| (e_value=8e-25) PREDICTED: lysosomal Pro-X carboxypeptidase-like [Vitis vinifera];; (*TAIR) AT2G24280.1 (e_value=4e-24) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc07g005190.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:182494-187318 transcript_region:SL2.40ch07:182494..187318- go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00050860g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|0|0|3|136|78; (*GB) gi|359484787|ref|XP_003633162.1| (e_value=3e-38) PREDICTED: lysosomal Pro-X carboxypeptidase-like [Vitis vinifera];; (*SWP) sp|P42785|PCP_HUMAN (e_value=1e-16) Lysosomal Pro-X carboxypeptidase OS=Homo sapiens GN=PRCP PE=1 SV=1;; (*TAIR) AT2G24280.1 (e_value=1e-35) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc07g005190.2.1 (e_value=3e-46) genomic_reference:SL2.40ch07 gene_region:182494-187318 transcript_region:SL2.40ch07:182494..187318- go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00004087g0011.1 protein AED:0.10 eAED:0.10 QI:193|1|1|1|0.84|0.9|20|212|1045; (*GB) gi|149789412|gb|ABR29877.1| (e_value=0.0) phosphoenolpyruvate carboxylase [Ricinus communis];; (*SWP) sp|Q8GVE8|CAPP4_ARATH (e_value=0.0) Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1;; (*TAIR) AT1G68750.1 (e_value=0.0) | Symbols: ATPPC4, PPC4 | phosphoenolpyruvate carboxylase 4 | chr1:25822942-25828104 REVERSE LENGTH=1032;; (*ITAG) Solyc04g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:663594-674845 transcript_region:SL2.40ch04:663594..674845- go_terms:GO:0005515,GO:0008964 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 **** A6YM33_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core "; GO:0005515,GO:0008964 NbS00004087g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.25|0.2|1|0.25|0.4|5|186|752; (*GB) gi|190607689|gb|ACE79503.1| (e_value=1e-173) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=4e-108) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=1e-71) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc07g049700.1.1 (e_value=1e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57376807-57379383 transcript_region:SL2.40ch07:57376807..57379383- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004087g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|342220082|gb|AEL17348.1| (e_value=3e-133) TCP1 [Petunia x hybrida];; (*SWP) sp|A0AQW4|TCP12_ARATH (e_value=9e-28) Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1;; (*TAIR) AT1G68800.1 (e_value=7e-29) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc04g006980.1.1 (e_value=9e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:687298-688425 transcript_region:SL2.40ch04:687298..688425- functional_description:"CYCLOIDEA-like group 1B protein (Fragment) (AHRD V1 *-*- Q6VM90_LUPAG); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00012097g0004.1 protein AED:0.03 eAED:0.03 QI:20|1|1|1|1|0.8|5|139|517; (*GB) gi|359494406|ref|XP_003634774.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: secologanin synthase-like [Vitis vinifera];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14610.1 (e_value=0.0) | Symbols: CYP72A7 | cytochrome P450, family 72, subfamily A, polypeptide 7 | chr3:4912565-4914503 FORWARD LENGTH=512;; (*ITAG) Solyc07g061980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62064805-62071501 transcript_region:SL2.40ch07:62064805..62071501+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017176g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.57|0.85|1|1|7|279|642; (*GB) gi|168066522|ref|XP_001785185.1| (e_value=2e-119) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q40545|KPYA_TOBAC (e_value=4e-111) Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G22960.1 (e_value=2e-100) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc09g082970.2.1 (e_value=6e-109) genomic_reference:SL2.40ch09 gene_region:64040779-64049501 transcript_region:SL2.40ch09:64040779..64049501+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9HKC4_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00017176g0012.1 protein AED:0.02 eAED:0.02 QI:47|1|0.5|1|1|1|2|0|169; (*ITAG) Solyc03g005290.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:165696-167327 transcript_region:SL2.40ch03:165696..167327- functional_description:"Unknown Protein (AHRD V1)"; NbS00017176g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|187 NbS00017176g0013.1 protein AED:0.40 eAED:0.40 QI:316|0|0.33|1|1|1|3|0|207; (*GB) gi|255552001|ref|XP_002517045.1| (e_value=2e-117) ADP-ribosylation factor, putative [Ricinus communis];; (*SWP) sp|Q55AD9|ARL5_DICDI (e_value=9e-70) ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1;; (*TAIR) AT3G22950.2 (e_value=1e-113) | Symbols: ARFC1 | ADP-ribosylation factor C1 | chr3:8136364-8137513 REVERSE LENGTH=183;; (*ITAG) Solyc03g005300.2.1 (e_value=1e-124) genomic_reference:SL2.40ch03 gene_region:167876-173442 transcript_region:SL2.40ch03:167876..173442- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor C1 (AHRD V1 ***- D7MXG7_ARALY); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00048449g0008.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|135 NbS00048449g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|0.5|1|1|2|280|174 NbS00048449g0009.1 protein AED:0.29 eAED:0.29 QI:134|1|0.5|1|0|0|2|0|286 NbS00019000g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|224060879|ref|XP_002300282.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19660.1 (e_value=3e-16) | Symbols: | unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6825678-6825872 REVERSE LENGTH=64;; (*ITAG) Solyc01g106890.2.1 (e_value=2e-21) genomic_reference:SL2.40ch01 gene_region:86361582-86362118 transcript_region:SL2.40ch01:86361582..86362118+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030400g0008.1 protein AED:0.16 eAED:0.20 QI:0|0.82|0.88|1|1|1|18|258|905; (*GB) gi|224071435|ref|XP_002303458.1| (e_value=0.0) DNA methyltransferase [Populus trichocarpa];; (*SWP) sp|Q94F87|CMT2_ARATH (e_value=0.0) DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3;; (*TAIR) AT4G19020.1 (e_value=0.0) | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-10420936 FORWARD LENGTH=1295;; (*ITAG) Solyc08g005400.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:292641-304684 transcript_region:SL2.40ch08:292641..304684+ go_terms:GO:0008017,GO:0045545 functional_description:"Cytosine-specific methyltransferase (AHRD V1 ***- B9S1U5_RICCO); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0008017,GO:0045545 NbS00030400g0009.1 protein AED:0.12 eAED:0.15 QI:0|0.68|0.7|1|0.52|0.65|20|0|607; (*GB) gi|255557651|ref|XP_002519855.1| (e_value=0.0) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT4G19040.1 (e_value=0.0) | Symbols: EDR2 | ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=718;; (*ITAG) Solyc08g005410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:304828-312257 transcript_region:SL2.40ch08:304828..312257- go_terms:GO:0008289 functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0008289 NbS00045862g0003.1 protein AED:0.14 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|255597883|ref|XP_002536881.1| (e_value=3e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G12340.1 (e_value=1e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220;; (*ITAG) Solyc04g057830.1.1 (e_value=4e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54085213-54085833 transcript_region:SL2.40ch04:54085213..54085833+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061041g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.9|1|1|0.8|0.90|11|429|381; (*GB) gi|225428330|ref|XP_002283109.1| (e_value=0.0) PREDICTED: uncharacterized protein At2g17340 [Vitis vinifera];; (*SWP) sp|Q949P3|Y2734_ARATH (e_value=0.0) Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1;; (*TAIR) AT4G35360.1 (e_value=0.0) | Symbols: | Uncharacterised conserved protein (UCP030210) | chr4:16812303-16814656 REVERSE LENGTH=367;; (*ITAG) Solyc10g074590.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57465951-57473739 transcript_region:SL2.40ch10:57465951..57473739- go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase 4 (AHRD V1 **** B6TFD8_MAIZE); contains Interpro domain(s) IPR016949 Uncharacterised conserved protein UCP030210 "; GO:0005515,GO:0004594 NbS00024291g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.62|1|0.71|0.75|8|0|703; (*GB) gi|255536819|ref|XP_002509476.1| (e_value=2e-177) somatic embryogenesis receptor kinase, putative [Ricinus communis];; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=1e-168) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=1e-169) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc03g034060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10043587-10048351 transcript_region:SL2.40ch03:10043587..10048351- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00015794g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-109) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00015794g0006.1 protein AED:0.24 eAED:0.25 QI:225|0.8|0.66|1|1|1|6|218|459; (*GB) gi|224138406|ref|XP_002322806.1| (e_value=0.0) iaa-amino acid hydrolase 4 [Populus trichocarpa];; (*SWP) sp|Q851L5|ILL3_ORYSJ (e_value=3e-174) IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=1e-172) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc06g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33677809-33682268 transcript_region:SL2.40ch06:33677809..33682268- go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 **** B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00015794g0018.1 protein AED:0.04 eAED:0.04 QI:122|1|1|1|0.6|0.66|6|220|833; (*GB) gi|359481004|ref|XP_002268494.2| (e_value=0.0) PREDICTED: zinc finger protein VAR3, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=6e-91) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT5G17790.1 (e_value=5e-92) | Symbols: VAR3 | zinc finger (Ran-binding) family protein | chr5:5869810-5872671 REVERSE LENGTH=758;; (*ITAG) Solyc01g057780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56763262-56769231 transcript_region:SL2.40ch01:56763262..56769231- go_terms:GO:0005515 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 **-- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005515 NbS00015794g0017.1 protein AED:0.57 eAED:0.57 QI:0|0|0|1|0|0|4|0|308; (*ITAG) Solyc01g017760.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034186g0002.1 protein AED:0.02 eAED:0.02 QI:21|1|1|1|1|1|3|324|318; (*GB) gi|156118322|gb|ABU49722.1| (e_value=2e-110) WRKY transcription factor 3 [Solanum tuberosum];; (*SWP) sp|Q9SV15|WRK11_ARATH (e_value=3e-85) Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2;; (*TAIR) AT4G31550.2 (e_value=4e-88) | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding protein 11 | chr4:15290065-15291458 REVERSE LENGTH=324;; (*ITAG) Solyc08g006320.2.1 (e_value=2e-113) genomic_reference:SL2.40ch08 gene_region:985013-986480 transcript_region:SL2.40ch08:985013..986480- go_terms:GO:0005516 functional_description:"WRKY transcription factor 3 (AHRD V1 ***- A7UGD0_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00034186g0015.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0.66|3|0|129; (*ITAG) Solyc11g039350.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23160122-23160442 transcript_region:SL2.40ch11:23160122..23160442- functional_description:"Unknown Protein (AHRD V1)"; NbS00031795g0003.1 protein AED:0.43 eAED:0.43 QI:0|0.42|0.25|0.62|0.85|0.75|8|0|506; (*GB) gi|296083403|emb|CBI23358.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84W55|IP5P4_ARATH (e_value=0.0) Type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 OS=Arabidopsis thaliana GN=FRA3 PE=1 SV=2;; (*TAIR) AT1G65580.1 (e_value=0.0) | Symbols: FRA3 | Endonuclease/exonuclease/phosphatase family protein | chr1:24377598-24383940 REVERSE LENGTH=1101;; (*ITAG) Solyc11g008800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2978131-2987532 transcript_region:SL2.40ch11:2978131..2987532- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00047009g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|168; (*GB) gi|225436516|ref|XP_002273603.1| (e_value=2e-40) PREDICTED: uncharacterized protein LOC100244862 [Vitis vinifera];; (*TAIR) AT2G28085.1 (e_value=2e-25) | Symbols: | SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124;; (*ITAG) Solyc06g074950.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42841790-42842065 transcript_region:SL2.40ch06:42841790..42842065- go_terms:GO:0005516 functional_description:"Auxin-responsive family protein (AHRD V1 ***- Q8S8L5_ARATH); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00001875g0020.1 protein AED:0.04 eAED:0.04 QI:0|0.92|0.86|1|0.85|0.86|15|0|1850; (*GB) gi|225459758|ref|XP_002285900.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis vinifera];; (*SWP) sp|P18616|RPB1_ARATH (e_value=0.0) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=3;; (*TAIR) AT4G35800.1 (e_value=0.0) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839;; (*ITAG) Solyc02g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41367508-41376061 transcript_region:SL2.40ch02:41367508..41376061- go_terms:GO:0031625 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SXC0_RICCO); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0031625 NbS00001875g0027.1 protein AED:0.18 eAED:0.18 QI:289|1|1|1|0.66|0.5|10|379|324; (*GB) gi|296090715|emb|CBI41116.3| (e_value=3e-115) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66050.1 (e_value=2e-90) | Symbols: | Wound-responsive family protein | chr5:26412333-26414428 REVERSE LENGTH=340;; (*ITAG) Solyc02g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41342099-41345742 transcript_region:SL2.40ch02:41342099..41345742- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00001875g0005.1 protein AED:0.34 eAED:0.37 QI:0|0.66|0.75|1|0.66|0.5|4|981|99 NbS00001875g0004.1 protein AED:0.49 eAED:0.49 QI:0|0.66|0.5|0.75|1|1|4|0|142; (*GB) gi|1781299|emb|CAA70700.1| (e_value=2e-50) transformer-SR ribonucleoprotein [Nicotiana tabacum];; (*SWP) sp|Q80YR5|SAFB2_MOUSE (e_value=3e-13) Scaffold attachment factor B2 OS=Mus musculus GN=Safb2 PE=1 SV=2;; (*TAIR) AT4G35785.3 (e_value=6e-46) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953708-16955127 REVERSE LENGTH=207;; (*ITAG) Solyc02g061840.2.1 (e_value=4e-52) genomic_reference:SL2.40ch02 gene_region:27933230-27938206 transcript_region:SL2.40ch02:27933230..27938206- go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00001875g0029.1 protein AED:0.16 eAED:0.18 QI:0|0|0|0.66|0|0.33|3|0|277; (*ITAG) Solyc01g017760.1.1 (e_value=1e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001875g0028.1 protein AED:0.25 eAED:0.25 QI:39|1|0.33|1|1|0.66|3|204|158; (*GB) gi|198400337|gb|ACH87177.1| (e_value=8e-34) hypothetical protein [Camellia sinensis];; (*TAIR) AT2G17710.1 (e_value=4e-22) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7693856-7694554 FORWARD LENGTH=152;; (*ITAG) Solyc02g083380.2.1 (e_value=8e-43) genomic_reference:SL2.40ch02 gene_region:41387443-41388246 transcript_region:SL2.40ch02:41387443..41388246+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001875g0002.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|225431343|ref|XP_002278070.1| (e_value=5e-72) PREDICTED: uncharacterized protein At4g08330, chloroplastic [Vitis vinifera];; (*TAIR) AT2G17705.1 (e_value=3e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:7692506-7692889 FORWARD LENGTH=127;; (*ITAG) Solyc02g083360.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41381309-41381689 transcript_region:SL2.40ch02:41381309..41381689+ functional_description:"Protein-methionine-s-oxide reductase (AHRD V1 **-- D7L9H5_ARALY)"; NbS00035102g0004.1 protein AED:0.09 eAED:0.09 QI:70|0.72|0.83|1|0.81|0.83|12|248|390; (*GB) gi|225433467|ref|XP_002263384.1| (e_value=1e-99) PREDICTED: uncharacterized protein LOC100245254 [Vitis vinifera];; (*TAIR) AT3G23910.1 (e_value=5e-74) | Symbols: | BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). | chr3:8636594-8639344 REVERSE LENGTH=421;; (*ITAG) Solyc09g092180.2.1 (e_value=3e-177) genomic_reference:SL2.40ch09 gene_region:66671769-66678309 transcript_region:SL2.40ch09:66671769..66678309+ functional_description:"HAPp48 5 protein (Fragment) (AHRD V1 ***- P92952_ARATH)"; NbS00006733g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|718; (*GB) gi|350538631|ref|NP_001234864.1| (e_value=0.0) EIN3-binding F-box protein 2 [Solanum lycopersicum];; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=0.0) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1;; (*TAIR) AT2G25490.1 (e_value=0.0) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628;; (*ITAG) Solyc08g060810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:42768508-42771708 transcript_region:SL2.40ch08:42768508..42771708- go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin ligase complex F-box protein GRR1 (AHRD V1 *-** C5G8H6_AJEDR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00001387g0004.1 protein AED:0.05 eAED:0.05 QI:193|0.8|0.83|1|1|1|6|204|795; (*GB) gi|371917282|dbj|BAL44717.1| (e_value=0.0) SlArf/Xyl2 [Solanum lycopersicum];; (*SWP) sp|Q94KD8|BXL2_ARATH (e_value=0.0) Probable beta-D-xylosidase 2 OS=Arabidopsis thaliana GN=BXL2 PE=2 SV=1;; (*TAIR) AT1G02640.1 (e_value=0.0) | Symbols: BXL2, ATBXL2 | beta-xylosidase 2 | chr1:564293-567580 FORWARD LENGTH=768;; (*ITAG) Solyc01g079570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71151785-71157448 transcript_region:SL2.40ch01:71151785..71157448+ go_terms:GO:0005975 functional_description:"Beta xylosidase (AHRD V1 ***- Q6RXY3_FRAAN); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00041016g0001.1 protein AED:0.00 eAED:0.13 QI:274|1|0.5|1|0|0|2|281|604; (*GB) gi|297736961|emb|CBI26162.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYM2|PP393_ARATH (e_value=4e-123) Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2;; (*TAIR) AT5G18950.1 (e_value=3e-124) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6328519-6329970 REVERSE LENGTH=483;; (*ITAG) Solyc01g080310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72051326-72056689 transcript_region:SL2.40ch01:72051326..72056689+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LYJ1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00030554g0001.1 protein AED:0.14 eAED:0.14 QI:429|0.70|0.72|0.94|0.88|0.83|18|0|1053; (*GB) gi|359492622|ref|XP_002282350.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267859 [Vitis vinifera];; (*TAIR) AT4G23000.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12055241-12060028 FORWARD LENGTH=1015;; (*ITAG) Solyc04g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61395376-61403327 transcript_region:SL2.40ch04:61395376..61403327- go_terms:GO:0004722 functional_description:"Calcineurin-like phosphoesterase family protein (AHRD V1 *-*- A9G786_SORC5); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00014451g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|13699079|dbj|BAB41200.1| (e_value=2e-131) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G76600.1 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28746975-28747625 FORWARD LENGTH=216;; (*ITAG) Solyc04g082960.1.1 (e_value=9e-77) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:64017682-64018245 transcript_region:SL2.40ch04:64017682..64018245+ functional_description:"TMV response-related protein (AHRD V1 *--- B6UGH4_MAIZE)"; NbS00006448g0013.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|392; (*GB) gi|224071449|ref|XP_002303465.1| (e_value=8e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=1e-117) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=9e-119) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc12g010910.1.1 (e_value=3e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3811811-3813376 transcript_region:SL2.40ch12:3811811..3813376- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00006448g0014.1 protein AED:0.49 eAED:0.53 QI:0|0|0|0.5|0|0.5|2|0|98; (*GB) gi|224071449|ref|XP_002303465.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=1e-14) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=8e-16) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc12g010910.1.1 (e_value=9e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3811811-3813376 transcript_region:SL2.40ch12:3811811..3813376- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00006448g0003.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|4|0|876; (*GB) gi|329739345|gb|AEB97385.1| (e_value=0.0) MAX2B [Petunia x hybrida];; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=0.0) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2;; (*TAIR) AT2G42620.1 (e_value=0.0) | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693;; (*ITAG) Solyc12g010900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3807527-3809695 transcript_region:SL2.40ch12:3807527..3809695+ functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00006448g0011.1 protein AED:0.25 eAED:0.25 QI:194|1|1|1|1|1|5|350|181; (*GB) gi|10799832|emb|CAC12883.1| (e_value=3e-116) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42794|RL112_ARATH (e_value=2e-114) 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2;; (*TAIR) AT5G45775.2 (e_value=2e-115) | Symbols: | Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=2e-118) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00006448g0018.1 protein AED:0.78 eAED:0.90 QI:0|0|0|0.6|0.75|0.8|5|0|266 NbS00010017g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|452; (*GB) gi|359488216|ref|XP_003633721.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100852994 [Vitis vinifera];; (*TAIR) AT1G71090.1 (e_value=0.0) | Symbols: | Auxin efflux carrier family protein | chr1:26812551-26813924 FORWARD LENGTH=457;; (*ITAG) Solyc02g091240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47177496-47178854 transcript_region:SL2.40ch02:47177496..47178854- go_terms:GO:0009672 functional_description:"Auxin efflux carrier protein-like (AHRD V1 **** Q6YZX7_ORYSJ); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00027678g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.2|1|0.5|0.6|5|0|202; (*GB) gi|225432876|ref|XP_002280020.1| (e_value=9e-82) PREDICTED: uncharacterized protein LOC100252711 [Vitis vinifera];; (*TAIR) AT5G43750.1 (e_value=9e-69) | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:17580100-17581145 REVERSE LENGTH=212;; (*ITAG) Solyc09g083190.2.1 (e_value=5e-118) genomic_reference:SL2.40ch09 gene_region:64266291-64268554 transcript_region:SL2.40ch09:64266291..64268554+ functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG89_ARATH)"; NbS00022123g0002.1 protein AED:0.35 eAED:0.45 QI:59|0|0|1|0|0|2|0|109; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-18) hypothetical protein [Nicotiana tabacum]; NbS00022123g0003.1 protein AED:0.39 eAED:0.45 QI:0|0|0|1|0|0|2|0|95 NbS00010602g0007.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|341; (*GB) gi|255586331|ref|XP_002533816.1| (e_value=1e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01410.1 (e_value=3e-109) | Symbols: | NHL domain-containing protein | chr2:175209-176372 REVERSE LENGTH=387;; (*ITAG) Solyc04g007660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1354361-1355470 transcript_region:SL2.40ch04:1354361..1355470- functional_description:"SMP-30/Gluconolaconase/LRE domain protein (AHRD V1 ***- A5FD91_FLAJ1); contains Interpro domain(s) IPR013658 SMP-30/Gluconolaconase/LRE-like region "; NbS00010602g0006.1 protein AED:0.11 eAED:0.11 QI:68|1|1|1|0|0.33|6|657|57 NbS00010602g0113.1 protein AED:0.06 eAED:0.06 QI:974|0.9|0.81|1|0.9|0.81|11|299|1659 NbS00010602g0114.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|1|1|4|0|645 NbS00016973g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|198; (*GB) gi|147799847|emb|CAN66059.1| (e_value=1e-75) hypothetical protein VITISV_017037 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=4e-61) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=3e-62) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=2e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00016973g0005.1 protein AED:0.51 eAED:0.60 QI:0|0|0|0.66|0|0|3|0|199 NbS00027910g0008.1 protein AED:0.06 eAED:0.06 QI:265|0.66|0.71|1|0.83|0.85|7|0|413; (*GB) gi|359480559|ref|XP_003632492.1| (e_value=4e-148) PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q9FJX5|BT4_ARATH (e_value=9e-130) BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1;; (*TAIR) AT5G67480.2 (e_value=6e-131) | Symbols: BT4 | BTB and TAZ domain protein 4 | chr5:26931055-26932529 REVERSE LENGTH=383;; (*ITAG) Solyc02g092460.2.1 (e_value=8e-166) genomic_reference:SL2.40ch02 gene_region:48088459-48090055 transcript_region:SL2.40ch02:48088459..48090055+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- B5X432_SALSA); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00027910g0009.1 protein AED:0.11 eAED:0.11 QI:210|1|1|1|1|1|4|818|888; (*GB) gi|225438990|ref|XP_002279613.1| (e_value=0.0) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9FJX6|FH6_ARATH (e_value=0.0) Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1;; (*TAIR) AT5G67470.1 (e_value=0.0) | Symbols: ATFH6, FH6 | formin homolog 6 | chr5:26926835-26930212 FORWARD LENGTH=899;; (*ITAG) Solyc02g092470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48091589-48096584 transcript_region:SL2.40ch02:48091589..48096584- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00035410g0007.1 protein AED:0.20 eAED:0.20 QI:100|0.33|0.25|1|1|1|4|0|261; (*GB) gi|225455669|ref|XP_002263622.1| (e_value=1e-78) PREDICTED: uncharacterized protein LOC100262964 [Vitis vinifera];; (*TAIR) AT5G51880.1 (e_value=8e-66) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:21089395-21090775 FORWARD LENGTH=250;; (*ITAG) Solyc03g006820.2.1 (e_value=1e-102) genomic_reference:SL2.40ch03 gene_region:1322822-1326576 transcript_region:SL2.40ch03:1322822..1326576- go_terms:GO:0055114 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family family (Fragment) (AHRD V1 **-- Q08MC8_STIAU); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00009718g0015.1 protein AED:0.08 eAED:0.06 QI:45|0.66|0.25|1|0.66|0.25|4|1461|663; (*GB) gi|255570308|ref|XP_002526114.1| (e_value=5e-170) receptor-kinase, putative [Ricinus communis];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=6e-125) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=5e-126) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g009040.2.1 (e_value=2e-173) genomic_reference:SL2.40ch04 gene_region:2600952-2604337 transcript_region:SL2.40ch04:2600952..2604337- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00009718g0018.1 protein AED:0.05 eAED:0.09 QI:0|0|0|0.83|0.2|0.5|6|0|837; (*GB) gi|147855038|emb|CAN82378.1| (e_value=1e-43) hypothetical protein VITISV_036229 [Vitis vinifera];; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=2e-13) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT5G14990.2 (e_value=5e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis. | chr5:4850764-4852485 FORWARD LENGTH=573;; (*ITAG) Solyc04g049440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:41040558-41043524 transcript_region:SL2.40ch04:41040558..41043524- functional_description:"WPP domain-associated protein (AHRD V1 *-*- WAP_ARATH)"; NbS00009718g0003.1 protein AED:0.19 eAED:0.19 QI:715|1|1|1|0.66|0.46|13|1114|300; (*GB) gi|225427316|ref|XP_002279150.1| (e_value=1e-112) PREDICTED: two-component response regulator-like APRR2 [Vitis vinifera];; (*SWP) sp|Q6LA43|APRR2_ARATH (e_value=3e-63) Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2;; (*TAIR) AT4G18020.5 (e_value=1e-64) | Symbols: | CheY-like two-component responsive regulator family protein | chr4:10003991-10006682 REVERSE LENGTH=487;; (*ITAG) Solyc08g077230.2.1 (e_value=7e-162) genomic_reference:SL2.40ch08 gene_region:58307194-58313022 transcript_region:SL2.40ch08:58307194..58313022- go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00009718g0016.1 protein AED:0.20 eAED:0.21 QI:34|0.9|0.90|1|0.8|0.90|11|200|553; (*GB) gi|356550175|ref|XP_003543464.1| (e_value=0.0) PREDICTED: protein disulfide isomerase-like 1-4-like isoform 1 [Glycine max];; (*SWP) sp|Q9FF55|PDI14_ARATH (e_value=0.0) Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=2 SV=1;; (*TAIR) AT5G60640.1 (e_value=0.0) | Symbols: ATPDIL1-4, PDI2, ATPDI2, PDIL1-4 | PDI-like 1-4 | chr5:24371141-24373993 REVERSE LENGTH=597;; (*ITAG) Solyc04g049450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41119290-41124805 transcript_region:SL2.40ch04:41119290..41124805+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-2 (AHRD V1 **** B1Q2X5_SOYBN); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756 NbS00009718g0024.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.5|0|0|2|0|143 NbS00009718g0025.1 protein AED:0.58 eAED:0.80 QI:0|0|0|1|0|0|2|0|77 NbS00002989g0010.1 protein AED:0.12 eAED:0.12 QI:342|1|1|1|0.66|0.5|4|233|681; (*GB) gi|255573161|ref|XP_002527510.1| (e_value=6e-109) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19610.1 (e_value=8e-37) | Symbols: | Plant protein of unknown function (DUF936) | chr3:6812493-6814660 REVERSE LENGTH=640;; (*ITAG) Solyc01g107120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86503184-86506038 transcript_region:SL2.40ch01:86503184..86506038+ functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00002989g0013.1 protein AED:0.31 eAED:0.31 QI:319|1|0.83|1|0.8|0.5|6|0|295; (*GB) gi|110931654|gb|ABH02826.1| (e_value=9e-88) MYB transcription factor MYB55 [Glycine max];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=1e-76) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=9e-78) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc11g044320.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35412464-35418671 transcript_region:SL2.40ch11:35412464..35418671- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone (AHRD V1 ***- B9HN09_POPTR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0005634,GO:0003677,GO:0045449 NbS00004328g0011.1 protein AED:0.15 eAED:0.21 QI:0|0.5|0|1|0|0.33|3|0|469; (*GB) gi|225438581|ref|XP_002280314.1| (e_value=8e-160) PREDICTED: protein CPR-5-like [Vitis vinifera];; (*SWP) sp|Q9LV85|CPR5_ARATH (e_value=4e-89) Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5 PE=1 SV=1;; (*TAIR) AT5G64930.1 (e_value=3e-90) | Symbols: CPR5, HYS1 | CPR5 protein, putative | chr5:25945885-25948321 REVERSE LENGTH=564;; (*ITAG) Solyc04g054170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51021361-51028895 transcript_region:SL2.40ch04:51021361..51028895+ functional_description:"CPR5 (Fragment) (AHRD V1 *-*- B0ZWT2_ARATH)"; NbS00004328g0008.1 protein AED:0.19 eAED:0.19 QI:740|1|1|1|0.78|0.73|15|469|190; (*GB) gi|356509048|ref|XP_003523264.1| (e_value=1e-96) PREDICTED: uncharacterized protein LOC100801162 [Glycine max];; (*TAIR) AT5G10010.1 (e_value=4e-89) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). | chr5:3128098-3131452 FORWARD LENGTH=434;; (*ITAG) Solyc04g054180.2.1 (e_value=2e-111) genomic_reference:SL2.40ch04 gene_region:51030426-51037336 transcript_region:SL2.40ch04:51030426..51037336- functional_description:"Os02g0519300 protein (Fragment) (AHRD V1 *-*- C7IY37_ORYSJ)"; NbS00048659g0006.1 protein AED:0.26 eAED:0.34 QI:0|0|0|1|0|0|3|0|166; (*GB) gi|57013947|ref|YP_173420.1| (e_value=1e-31) hypothetical protein NitaMp078 [Nicotiana tabacum];; (*ITAG) Solyc00g013160.1.1 (e_value=3e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10688003-10688564 transcript_region:SL2.40ch00:10688003..10688564- functional_description:"Unknown Protein (AHRD V1)"; NbS00048659g0005.1 protein AED:0.22 eAED:0.58 QI:0|0|0|1|0|0|2|0|151; (*GB) gi|255548249|ref|XP_002515181.1| (e_value=4e-28) protein transport protein sec23, putative [Ricinus communis];; (*TAIR) AT4G01810.1 (e_value=2e-27) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc09g055810.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:40994970-40995209 transcript_region:SL2.40ch09:40994970..40995209- functional_description:"Unknown Protein (AHRD V1)"; NbS00004731g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|177|427; (*GB) gi|224128366|ref|XP_002329144.1| (e_value=4e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=2e-83) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT4G27460.1 (e_value=1e-84) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr4:13732939-13734263 FORWARD LENGTH=391;; (*ITAG) Solyc10g006920.2.1 (e_value=1e-175) genomic_reference:SL2.40ch10 gene_region:1351502-1353880 transcript_region:SL2.40ch10:1351502..1353880+ functional_description:"CBS domain containing protein (AHRD V1 **-- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00058709g0008.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.5|0|0.5|2|0|122; (*ITAG) Solyc10g085730.1.1 (e_value=5e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64138348-64140976 transcript_region:SL2.40ch10:64138348..64140976+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00058709g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.25|0.6|5|0|350; (*GB) gi|359482294|ref|XP_002284087.2| (e_value=0.0) PREDICTED: GDSL esterase/lipase At5g03820-like [Vitis vinifera];; (*SWP) sp|Q9LZC5|GDL73_ARATH (e_value=5e-175) GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1;; (*TAIR) AT5G03820.1 (e_value=4e-176) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr5:1015803-1017251 REVERSE LENGTH=354;; (*ITAG) Solyc10g085740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64141402-64143991 transcript_region:SL2.40ch10:64141402..64143991- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g03820 (AHRD V1 ***- GDL73_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00058709g0007.1 protein AED:0.22 eAED:0.29 QI:0|0|0|1|0|0|3|0|236; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=1e-78) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=2e-67) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=2e-68) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc09g008720.1.1 (e_value=1e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2157113-2159992 transcript_region:SL2.40ch09:2157113..2159992+ go_terms:GO:0003824 functional_description:"Ethylene receptor (AHRD V1 *--- C0ILN8_COFCA); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00037075g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|2246454|gb|AAB62808.1| (e_value=0.0) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q39227|SMT2_ARATH (e_value=0.0) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=0.0) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc01g111830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00037075g0006.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|1|1|2|0|110; (*ITAG) Solyc01g111820.2.1 (e_value=4e-41) genomic_reference:SL2.40ch01 gene_region:89742850-89743437 transcript_region:SL2.40ch01:89742850..89743437+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037075g0010.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|0|0|3|0|150; (*GB) gi|224083179|ref|XP_002306959.1| (e_value=2e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT2G16980.1 (e_value=5e-26) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380525 FORWARD LENGTH=408;; (*ITAG) Solyc01g111840.2.1 (e_value=3e-47) genomic_reference:SL2.40ch01 gene_region:89767571-89772096 transcript_region:SL2.40ch01:89767571..89772096+ go_terms:GO:0008493 functional_description:"MFS-type drug efflux transporter P55 (AHRD V1 *--* MFS55_MYCTU); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00005094g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|57013931|ref|YP_173404.1| (e_value=2e-31) ATP synthase F0 subunit 9 [Nicotiana tabacum];; (*SWP) sp|Q07060|ATP9_PETSP (e_value=7e-32) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=8e-26) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00005094g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|5|252|464; (*GB) gi|356498596|ref|XP_003518136.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase 1 [NAD(P)+]-like [Glycine max];; (*SWP) sp|C4LJE8|GPDA_CORK4 (e_value=3e-14) Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=gpsA PE=3 SV=1;; (*TAIR) AT2G41540.3 (e_value=0.0) | Symbols: GPDHC1 | 6-phosphogluconate dehydrogenase family protein | chr2:17326801-17328654 FORWARD LENGTH=462;; (*ITAG) Solyc04g016330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7131359-7134790 transcript_region:SL2.40ch04:7131359..7134790- go_terms:GO:0004367,GO:0051287 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** O22216_ARATH); contains Interpro domain(s) IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004367,GO:0051287 NbS00022902g0015.1 protein AED:0.01 eAED:0.01 QI:195|1|1|1|0.5|0.66|3|265|161; (*GB) gi|225436492|ref|XP_002273308.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100241419 [Vitis vinifera];; (*TAIR) AT2G28105.1 (e_value=1e-39) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11976764-11977713 FORWARD LENGTH=166;; (*ITAG) Solyc11g066240.1.1 (e_value=2e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49042187-49044698 transcript_region:SL2.40ch11:49042187..49044698+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like "; NbS00022902g0018.1 protein AED:0.08 eAED:0.11 QI:0|0.33|0|1|0.33|0|4|0|505; (*GB) gi|224104699|ref|XP_002313533.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GW72|FUCO1_ARATH (e_value=0.0) Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2;; (*TAIR) AT2G28100.1 (e_value=0.0) | Symbols: ATFUC1, FUC1 | alpha-L-fucosidase 1 | chr2:11974803-11976489 FORWARD LENGTH=506;; (*ITAG) Solyc11g069010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50659199-50663190 transcript_region:SL2.40ch11:50659199..50663190- go_terms:GO:0005975 functional_description:"Alpha-L-fucosidase 1 (AHRD V1 ***- D7LIF4_ARALY); contains Interpro domain(s) IPR000933 Glycoside hydrolase, family 29 "; GO:0005975 NbS00022902g0019.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.9|0.9|0.88|0.9|10|517|516; (*GB) gi|225459806|ref|XP_002285912.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera];; (*SWP) sp|Q4R6F8|TCPB_MACFA (e_value=0.0) T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3;; (*TAIR) AT5G20890.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527;; (*ITAG) Solyc11g069000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50652125-50657452 transcript_region:SL2.40ch11:50652125..50657452- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit beta (AHRD V1 ***- B6T8X5_MAIZE); contains Interpro domain(s) IPR012716 T-complex protein 1, beta subunit "; GO:0044267,GO:0006457 NbS00022902g0021.1 protein AED:0.20 eAED:0.20 QI:279|1|1|1|0.44|0.5|10|392|288; (*GB) gi|225465726|ref|XP_002263990.1| (e_value=2e-141) PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera];; (*SWP) sp|Q8C436|MT21D_MOUSE (e_value=9e-20) Methyltransferase-like protein 21D OS=Mus musculus GN=Mettl21d PE=2 SV=2;; (*TAIR) AT1G08125.1 (e_value=1e-109) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:2539748-2542230 REVERSE LENGTH=315;; (*ITAG) Solyc11g068990.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50648079-50651193 transcript_region:SL2.40ch11:50648079..50651193+ functional_description:"FAM119A (AHRD V1 **-- C1BWY6_ESOLU); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00022902g0017.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.33|1|0.6|0.66|6|0|310; (*GB) gi|148469859|gb|ABQ65859.1| (e_value=0.0) serine carboxypeptidase III [Nicotiana tabacum];; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=3e-154) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2;; (*TAIR) AT3G45010.1 (e_value=3e-155) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc11g066250.1.1 (e_value=2e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49045907-49049862 transcript_region:SL2.40ch11:49045907..49049862- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q9XH61_9ASTR); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00054257g0004.1 protein AED:0.36 eAED:0.41 QI:49|0.33|0.5|1|0.33|0.25|4|320|98; (*GB) gi|297743096|emb|CBI35963.3| (e_value=2e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G17650.1 (e_value=3e-21) | Symbols: GLYR2, GR2 | glyoxylate reductase 2 | chr1:6069594-6071964 REVERSE LENGTH=358;; (*ITAG) Solyc03g121720.2.1 (e_value=4e-19) genomic_reference:SL2.40ch03 gene_region:63848472-63854092 transcript_region:SL2.40ch03:63848472..63854092+ go_terms:GO:0003858,GO:0030267 functional_description:"2-hydroxy-3-oxopropionate reductase (AHRD V1 **-* B6T4X5_MAIZE); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0003858,GO:0030267 NbS00007989g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|0|431; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=4e-169) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-146) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=5e-52) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc10g079330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60214287-60216369 transcript_region:SL2.40ch10:60214287..60216369- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 *-*- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00026944g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|255565639|ref|XP_002523809.1| (e_value=6e-81) Ferredoxin-3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|P27788|FER3_MAIZE (e_value=2e-63) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=3e-62) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=9e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00025064g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.33|1|1|3|0|249; (*GB) gi|350538977|ref|NP_001233856.1| (e_value=1e-131) yfe37 protein [Solanum lycopersicum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=5e-72) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=2e-104) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc01g091660.2.1 (e_value=5e-143) genomic_reference:SL2.40ch01 gene_region:77016320-77017458 transcript_region:SL2.40ch01:77016320..77017458- go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4X9_ZEAMM); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00025064g0012.1 protein AED:0.17 eAED:0.22 QI:0|0|0|1|0|0|2|0|233; (*GB) gi|255538116|ref|XP_002510123.1| (e_value=1e-70) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24220.2 (e_value=6e-67) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=387;; (*ITAG) Solyc01g091670.2.1 (e_value=3e-110) genomic_reference:SL2.40ch01 gene_region:77024365-77026001 transcript_region:SL2.40ch01:77024365..77026001+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6N9X0_NEROL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00025064g0011.1 protein AED:0.26 eAED:0.47 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|147807280|emb|CAN75260.1| (e_value=6e-25) hypothetical protein VITISV_041143 [Vitis vinifera];; (*SWP) sp|Q9C9D0|SOT16_ARATH (e_value=3e-22) Cytosolic sulfotransferase 16 OS=Arabidopsis thaliana GN=SOT16 PE=1 SV=1;; (*TAIR) AT1G74100.1 (e_value=2e-23) | Symbols: SOT16, ATSOT16, CORI-7, ATST5A | sulfotransferase 16 | chr1:27864489-27865505 REVERSE LENGTH=338;; (*ITAG) Solyc11g067320.1.1 (e_value=3e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50146004-50146972 transcript_region:SL2.40ch11:50146004..50146972- go_terms:GO:0008146 functional_description:"Sulfotransferase 5a (AHRD V1 ***- C5H9P5_BRARP); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0008146 NbS00053812g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.25|1|0.33|0.5|4|0|340; (*GB) gi|296083734|emb|CBI23723.3| (e_value=5e-76) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G33320.1 (e_value=2e-63) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602;; (*ITAG) Solyc09g090920.2.1 (e_value=1e-144) genomic_reference:SL2.40ch09 gene_region:65673197-65675359 transcript_region:SL2.40ch09:65673197..65675359- functional_description:"C2 domain-containing protein (AHRD V1 *-*- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00012413g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|1|0.75|0.8|5|108|156; (*GB) gi|225442949|ref|XP_002265443.1| (e_value=4e-84) PREDICTED: histidine-containing phosphotransfer protein 6 [Vitis vinifera];; (*SWP) sp|Q9SSC9|AHP6_ARATH (e_value=9e-68) Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2;; (*TAIR) AT1G80100.1 (e_value=7e-69) | Symbols: AHP6, HP6 | histidine phosphotransfer protein 6 | chr1:30133818-30134652 FORWARD LENGTH=154;; (*ITAG) Solyc03g116720.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60060769-60061956 transcript_region:SL2.40ch03:60060769..60061956- go_terms:GO:0009927 functional_description:"Histidine phosphotransfer protein (AHRD V1 **** B9MWP3_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00012413g0019.1 protein AED:0.18 eAED:0.18 QI:542|0.80|0.72|0.95|0.71|0.68|22|0|781; (*GB) gi|359484207|ref|XP_002285341.2| (e_value=0.0) PREDICTED: topless-related protein 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q27GK7|TPR4_ARATH (e_value=0.0) Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2;; (*TAIR) AT3G15880.1 (e_value=0.0) | Symbols: WSIP2, TPR4 | WUS-interacting protein 2 | chr3:5364792-5371869 REVERSE LENGTH=1135;; (*ITAG) Solyc03g116750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60083005-60092974 transcript_region:SL2.40ch03:60083005..60092974- go_terms:GO:0005515 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515 NbS00012413g0002.1 protein AED:0.19 eAED:0.19 QI:328|1|1|1|0.8|0.66|6|215|315; (*GB) gi|289065765|gb|ADC80920.1| (e_value=7e-180) delta-9 fatty acid desaturase [Vernicia fordii];; (*SWP) sp|Q949X0|ADS3_ARATH (e_value=6e-174) Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2;; (*TAIR) AT3G15850.1 (e_value=4e-175) | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desaturase 5 | chr3:5359087-5360998 FORWARD LENGTH=371;; (*ITAG) Solyc03g116730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60070030-60072447 transcript_region:SL2.40ch03:60070030..60072447- go_terms:GO:0004768 functional_description:"Stearoyl-CoA 9-desaturase (AHRD V1 **** D7E3I2_NOSA0); contains Interpro domain(s) IPR015876 Fatty acid desaturase, type 1, core "; GO:0004768 NbS00012413g0017.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|0.33|0.5|4|0|328; (*GB) gi|359482360|ref|XP_002266079.2| (e_value=7e-112) PREDICTED: uncharacterized protein LOC100242207 [Vitis vinifera];; (*TAIR) AT3G15820.1 (e_value=5e-109) | Symbols: ROD1 | phosphatidic acid phosphatase-related / PAP2-related | chr3:5351217-5353573 FORWARD LENGTH=301;; (*ITAG) Solyc03g116740.2.1 (e_value=1e-160) genomic_reference:SL2.40ch03 gene_region:60077887-60080770 transcript_region:SL2.40ch03:60077887..60080770- go_terms:GO:0004142 functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 ***- Q9LVZ7_ARATH)"; GO:0004142 NbS00039687g0001.1 protein AED:0.43 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|418; (*GB) gi|225424186|ref|XP_002284132.1| (e_value=6e-48) PREDICTED: uncharacterized protein LOC100249220 [Vitis vinifera];; (*TAIR) AT1G23000.1 (e_value=2e-37) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:8143614-8144865 FORWARD LENGTH=358;; (*ITAG) Solyc05g008300.1.1 (e_value=3e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:2673136-2673954 transcript_region:SL2.40ch05:2673136..2673954- functional_description:"Unknown Protein (AHRD V1)"; NbS00018747g0011.1 protein AED:0.19 eAED:0.19 QI:71|1|0|1|1|0.5|2|0|47; (*GB) gi|224136578|ref|XP_002326895.1| (e_value=6e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g079930.2.1 (e_value=4e-19) genomic_reference:SL2.40ch04 gene_region:61845037-61848301 transcript_region:SL2.40ch04:61845037..61848301- functional_description:"Os10g0358600 protein (Fragment) (AHRD V1 ***- Q0IY80_ORYSJ)"; NbS00018747g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0.5|1|1|1|2|0|479; (*GB) gi|242072786|ref|XP_002446329.1| (e_value=0.0) hypothetical protein SORBIDRAFT_06g014400 [Sorghum bicolor];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00018747g0010.1 protein AED:0.67 eAED:0.72 QI:0|0|0|1|1|1|2|0|70 NbS00018747g0008.1 protein AED:0.27 eAED:0.27 QI:20|1|1|1|1|1|2|345|80; (*GB) gi|359478967|ref|XP_003632197.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100854232 isoform 1 [Vitis vinifera];; (*TAIR) AT1G47278.2 (e_value=7e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 37 Blast hits to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:17331263-17331726 FORWARD LENGTH=91;; (*ITAG) Solyc11g066070.1.1 (e_value=2e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48827458-48827700 transcript_region:SL2.40ch11:48827458..48827700- functional_description:"Unknown Protein (AHRD V1)"; NbS00047206g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.57|0.5|0.87|0.71|0.87|8|0|342; (*GB) gi|297742187|emb|CBI33974.3| (e_value=4e-151) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54LB8|VP13A_DICDI (e_value=5e-31) Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1;; (*TAIR) AT4G17140.3 (e_value=3e-143) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58609379-58620173 transcript_region:SL2.40ch08:58609379..58620173+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 ***- C1GW28_PARBA)"; NbS00047206g0003.1 protein AED:0.36 eAED:0.36 QI:470|0|0.33|0.33|1|1|3|0|76 NbC25571976g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|225435450|ref|XP_002282821.1| (e_value=1e-24) PREDICTED: transcription factor MYB46 [Vitis vinifera];; (*ITAG) Solyc11g065840.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48498505-48501558 transcript_region:SL2.40ch11:48498505..48501558- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q70KC5_EUCGU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00026206g0010.1 protein AED:0.08 eAED:0.10 QI:350|0|0.5|1|0|0.5|2|0|127; (*GB) gi|388502126|gb|AFK39129.1| (e_value=5e-39) unknown [Lotus japonicus];; (*SWP) sp|Q41387|PSBW_SPIOL (e_value=5e-35) Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1;; (*TAIR) AT2G30570.1 (e_value=2e-35) | Symbols: PSBW | photosystem II reaction center W | chr2:13019326-13020053 REVERSE LENGTH=133;; (*ITAG) Solyc06g084050.2.1 (e_value=5e-41) genomic_reference:SL2.40ch06 gene_region:45606674-45608051 transcript_region:SL2.40ch06:45606674..45608051+ go_terms:GO:0009523 functional_description:"Photosystem II reaction center W protein (AHRD V1 ***- B6TMB3_MAIZE); contains Interpro domain(s) IPR009806 Photosystem II protein PsbW, class 2 "; GO:0009523 NbS00026206g0005.1 protein AED:0.21 eAED:0.22 QI:0|0.9|0.81|1|0.9|0.81|11|571|562; (*GB) gi|1708059|sp|P80461.1|GSHRP_TOBAC (e_value=0.0) RecName: Full=Glutathione reductase, chloroplastic; Short=GR; Short=GRase; Flags: Precursor;; (*SWP) sp|P80461|GSHRP_TOBAC (e_value=0.0) Glutathione reductase, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GOR PE=1 SV=1;; (*TAIR) AT3G54660.1 (e_value=0.0) | Symbols: GR, EMB2360, ATGR2 | glutathione reductase | chr3:20230356-20233100 REVERSE LENGTH=565;; (*ITAG) Solyc09g065900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59792768-59797957 transcript_region:SL2.40ch09:59792768..59797957- go_terms:GO:0005524,GO:0005507 functional_description:"Glutathione reductase (AHRD V1 ***- B9IED0_POPTR); contains Interpro domain(s) IPR006324 Glutathione reductase, plant "; GO:0005524,GO:0005507 NbS00026206g0012.1 protein AED:0.12 eAED:0.14 QI:0|0.66|0.25|1|1|1|4|0|477; (*GB) gi|224066305|ref|XP_002302074.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBR6|PLA16_ARATH (e_value=0.0) Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2;; (*TAIR) AT2G30550.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:13014884-13017005 FORWARD LENGTH=529;; (*ITAG) Solyc09g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59781066-59784409 transcript_region:SL2.40ch09:59781066..59784409+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00017773g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=8e-33) MADS-box protein 15 [Petunia x hybrida];; (*SWP) sp|Q8RU31|MAD21_ORYSJ (e_value=2e-26) MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1;; (*TAIR) AT3G57230.1 (e_value=7e-27) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc05g015730.1.1 (e_value=4e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:11842331-11842573 transcript_region:SL2.40ch05:11842331..11842573- go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D3U2G9_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00015423g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.62|1|1|1|8|0|1146; (*GB) gi|359493041|ref|XP_002267014.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera];; (*SWP) sp|Q10251|IF2P_SCHPO (e_value=7e-152) Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1;; (*TAIR) AT1G76810.1 (e_value=0.0) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294;; (*ITAG) Solyc03g058380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:21433635-21441601 transcript_region:SL2.40ch03:21433635..21441601- go_terms:GO:0005525 functional_description:"Translation initiation factor (AHRD V1 ***- Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0005525 NbS00049426g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|82623383|gb|ABB87106.1| (e_value=0.0) eukaryotic peptide chain release factor subunit 1-3-like [Solanum tuberosum];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc05g055210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64100673-64101986 transcript_region:SL2.40ch05:64100673..64101986+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-3-like (AHRD V1 **** Q2VCK6_SOLTU); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00049426g0004.1 protein AED:0.20 eAED:0.20 QI:146|0|0|0.5|1|1|2|0|207; (*GB) gi|225464408|ref|XP_002269135.1| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100244711 [Vitis vinifera];; (*TAIR) AT5G04820.1 (e_value=4e-33) | Symbols: ATOFP13, OFP13 | ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260;; (*ITAG) Solyc11g006670.1.1 (e_value=3e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1276863-1277597 transcript_region:SL2.40ch11:1276863..1277597- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 **-- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbC23900056g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|85; (*ITAG) Solyc03g123460.2.1 (e_value=2e-26) genomic_reference:SL2.40ch03 gene_region:64358120-64359366 transcript_region:SL2.40ch03:64358120..64359366+ functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *--- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00029761g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.71|0.5|0.87|1|1|8|0|661; (*GB) gi|148910761|gb|ABR18447.1| (e_value=0.0) unknown [Picea sitchensis];; (*SWP) sp|Q9LKR3|HSP7K_ARATH (e_value=0.0) Heat shock 70 kDa protein 11 OS=Arabidopsis thaliana GN=HSP70-11 PE=1 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc01g099660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81599813-81602924 transcript_region:SL2.40ch01:81599813..81602924+ go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00029761g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|379054910|gb|AFC88846.1| (e_value=1e-20) putative luminal binding protein 7B4, partial [Tetragonia tetragonioides];; (*SWP) sp|Q42434|BIP_SPIOL (e_value=2e-20) Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1;; (*TAIR) AT5G42020.1 (e_value=1e-16) | Symbols: BIP, BIP2 | Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=668;; (*ITAG) Solyc01g099660.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:81599813-81602924 transcript_region:SL2.40ch01:81599813..81602924+ go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00026911g0005.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|392; (*GB) gi|224098210|ref|XP_002311136.1| (e_value=3e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39430.1 (e_value=4e-74) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00026911g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|356557044|ref|XP_003546828.1| (e_value=3e-132) PREDICTED: ALA-interacting subunit 3-like [Glycine max];; (*SWP) sp|Q9LTW0|ALIS1_ARATH (e_value=8e-131) ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1;; (*TAIR) AT3G12740.1 (e_value=6e-132) | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049739-4051561 FORWARD LENGTH=350;; (*ITAG) Solyc05g054800.1.1 (e_value=2e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63771846-63772898 transcript_region:SL2.40ch05:63771846..63772898- go_terms:GO:0005515 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515 NbS00026911g0004.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|224112885|ref|XP_002316319.1| (e_value=3e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT4G13580.1 (e_value=2e-29) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr4:7900427-7901161 FORWARD LENGTH=244;; (*ITAG) Solyc06g075630.2.1 (e_value=8e-32) genomic_reference:SL2.40ch06 gene_region:43397564-43399083 transcript_region:SL2.40ch06:43397564..43399083- functional_description:"Dirigent-like protein (AHRD V1 ***- B6TVE6_MAIZE); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00026911g0006.1 protein AED:0.04 eAED:0.04 QI:404|1|0.8|1|0.25|0.2|5|0|610; (*GB) gi|147792168|emb|CAN77499.1| (e_value=5e-51) hypothetical protein VITISV_002404 [Vitis vinifera];; (*TAIR) AT2G39435.2 (e_value=6e-26) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:16464446-16466492 REVERSE LENGTH=464;; (*ITAG) Solyc05g054770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63762854-63765253 transcript_region:SL2.40ch05:63762854..63765253+ functional_description:"Os03g0819700 protein (Fragment) (AHRD V1 *-*- Q0DMA9_ORYSJ)"; NbS00026911g0010.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.2|1|1|5|0|313; (*GB) gi|42557349|dbj|BAD11070.1| (e_value=6e-15) HSR203J like protein [Capsicum chinense];; (*ITAG) Solyc05g054790.1.1 (e_value=2e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63766571-63766906 transcript_region:SL2.40ch05:63766571..63766906+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016946g0016.1 protein AED:0.12 eAED:0.12 QI:256|0.94|0.94|1|0.83|0.84|19|305|696; (*GB) gi|316937100|gb|ADU60534.1| (e_value=0.0) cullin 1 [Solanum pennellii];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc06g008710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2615845-2621332 transcript_region:SL2.40ch06:2615845..2621332+ go_terms:GO:0030332 functional_description:"Cullin 1B (AHRD V1 ***- Q711G7_TOBAC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00016946g0019.1 protein AED:0.08 eAED:0.08 QI:723|0.71|0.53|1|0.64|0.4|15|859|1116; (*GB) gi|359479822|ref|XP_002269412.2| (e_value=3e-117) PREDICTED: uncharacterized protein LOC100254466 [Vitis vinifera];; (*TAIR) AT3G62900.1 (e_value=5e-83) | Symbols: | CW-type Zinc Finger | chr3:23248868-23254810 REVERSE LENGTH=1465;; (*ITAG) Solyc06g008720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2628999-2637520 transcript_region:SL2.40ch06:2628999..2637520- functional_description:"Zinc ion binding protein (AHRD V1 *-*- D7LTA9_ARALY)"; NbS00016946g0008.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|107; (*GB) gi|350537179|ref|NP_001234283.1| (e_value=2e-19) anti-PCD protein-like precursor [Solanum lycopersicum];; (*ITAG) Solyc12g014580.1.1 (e_value=9e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:5577417-5577847 transcript_region:SL2.40ch12:5577417..5577847- functional_description:"Pollen allergen Ole e 6 (AHRD V1 *-*- ALL6_OLEEU); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00016946g0017.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|121; (*GB) gi|54261828|gb|AAV31178.1| (e_value=6e-16) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00016946g0018.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|90 NbS00043507g0003.1 protein AED:0.46 eAED:0.49 QI:27|0|0.5|1|0|0|2|0|66; (*ITAG) Solyc02g093530.2.1 (e_value=2e-15) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00043507g0001.1 protein AED:0.52 eAED:0.85 QI:0|0|0|1|1|1|3|0|70 NbS00003707g0031.1 protein AED:0.12 eAED:0.12 QI:429|0.94|0.84|1|0.77|0.78|19|0|1331; (*GB) gi|147833190|emb|CAN68639.1| (e_value=0.0) hypothetical protein VITISV_030806 [Vitis vinifera];; (*SWP) sp|Q5XTS1|PLPL8_RABIT (e_value=4e-48) Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus GN=PNPLA8 PE=1 SV=1;; (*TAIR) AT1G61850.2 (e_value=0.0) | Symbols: | phospholipases;galactolipases | chr1:22856317-22862225 FORWARD LENGTH=1309;; (*ITAG) Solyc02g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39169442-39178222 transcript_region:SL2.40ch02:39169442..39178222+ go_terms:GO:0047714,GO:0004620 functional_description:"Patatin-like phospholipase family protein (AHRD V1 *--* A8PYJ4_BRUMA); contains Interpro domain(s) IPR002641 Patatin "; GO:0047714,GO:0004620 NbS00003707g0012.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|329; (*GB) gi|225445120|ref|XP_002280513.1| (e_value=7e-173) PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Vitis vinifera];; (*SWP) sp|Q3ECB8|PP128_ARATH (e_value=4e-142) Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1;; (*TAIR) AT1G77170.1 (e_value=3e-143) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28998133-28999536 REVERSE LENGTH=467;; (*ITAG) Solyc02g080350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39178657-39180027 transcript_region:SL2.40ch02:39178657..39180027+ go_terms:GO:0005329,GO:0019534 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUG5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005329,GO:0019534 NbS00003707g0033.1 protein AED:0.26 eAED:0.22 QI:0|0.58|0.38|1|0.66|0.61|13|377|772; (*GB) gi|296087024|emb|CBI33287.3| (e_value=2e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|P62289|ASPM_GORGO (e_value=4e-25) Abnormal spindle-like microcephaly-associated protein homolog OS=Gorilla gorilla gorilla GN=ASPM PE=2 SV=1;; (*TAIR) AT4G21820.1 (e_value=3e-67) | Symbols: | binding;calmodulin binding | chr4:11577558-11583871 FORWARD LENGTH=1255;; (*ITAG) Solyc02g080390.2.1 (e_value=4e-176) genomic_reference:SL2.40ch02 gene_region:39205897-39215832 transcript_region:SL2.40ch02:39205897..39215832+ functional_description:"Abnormal spindle-like microcephaly-associated protein (Fragment) (AHRD V1 *-*- B6UL97_HYLME); contains Interpro domain(s) IPR016146 Calponin-homology "; NbS00003707g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|224078648|ref|XP_002305590.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g080360.1.1 (e_value=4e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39182058-39182462 transcript_region:SL2.40ch02:39182058..39182462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003707g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.8|1|1|1|1|6|146|164; (*GB) gi|74038605|dbj|BAE43836.1| (e_value=2e-106) tobamovirus multiplication 1 [Nicotiana tabacum];; (*TAIR) AT4G21790.1 (e_value=5e-81) | Symbols: TOM1, ATTOM1 | tobamovirus multiplication 1 | chr4:11569924-11572163 FORWARD LENGTH=291;; (*ITAG) Solyc02g080370.2.1 (e_value=2e-101) genomic_reference:SL2.40ch02 gene_region:39185287-39192371 transcript_region:SL2.40ch02:39185287..39192371+ go_terms:GO:0005515 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515 NbS00003707g0034.1 protein AED:0.75 eAED:0.80 QI:0|0.14|0|0.62|0.57|0.87|8|0|342; (*GB) gi|147775497|emb|CAN71702.1| (e_value=8e-53) hypothetical protein VITISV_038718 [Vitis vinifera];; (*TAIR) AT4G21820.1 (e_value=6e-50) | Symbols: | binding;calmodulin binding | chr4:11577558-11583871 FORWARD LENGTH=1255;; (*ITAG) Solyc02g080390.2.1 (e_value=3e-93) genomic_reference:SL2.40ch02 gene_region:39205897-39215832 transcript_region:SL2.40ch02:39205897..39215832+ functional_description:"Abnormal spindle-like microcephaly-associated protein (Fragment) (AHRD V1 *-*- B6UL97_HYLME); contains Interpro domain(s) IPR016146 Calponin-homology "; NbS00003707g0030.1 protein AED:0.01 eAED:0.01 QI:69|1|1|1|1|1|2|233|137; (*GB) gi|225444442|ref|XP_002271195.1| (e_value=2e-66) PREDICTED: 15.4 kDa class V heat shock protein [Vitis vinifera];; (*SWP) sp|O49710|HS154_ARATH (e_value=4e-38) 15.4 kDa class V heat shock protein OS=Arabidopsis thaliana GN=HSP15.4 PE=2 SV=1;; (*TAIR) AT4G21870.1 (e_value=3e-39) | Symbols: | HSP20-like chaperones superfamily protein | chr4:11603756-11604285 REVERSE LENGTH=134;; (*ITAG) Solyc02g080410.2.1 (e_value=2e-90) genomic_reference:SL2.40ch02 gene_region:39217663-39218499 transcript_region:SL2.40ch02:39217663..39218499- functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00003707g0029.1 protein AED:0.42 eAED:0.42 QI:0|1|0.83|1|1|1|6|0|245; (*GB) gi|388509296|gb|AFK42714.1| (e_value=2e-158) unknown [Lotus japonicus];; (*SWP) sp|Q9ZS88|DER22_ARATH (e_value=1e-153) Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1;; (*TAIR) AT4G04860.1 (e_value=8e-155) | Symbols: DER2.2 | DERLIN-2.2 | chr4:2460135-2461378 FORWARD LENGTH=244;; (*ITAG) Solyc02g080380.2.1 (e_value=1e-165) genomic_reference:SL2.40ch02 gene_region:39193132-39200387 transcript_region:SL2.40ch02:39193132..39200387- go_terms:GO:0042288 functional_description:"Derlin-2 (AHRD V1 ***- B6TKJ7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0042288 NbS00036072g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|350539934|ref|NP_001234581.1| (e_value=4e-108) TCP transcription factor 14 [Solanum lycopersicum];; (*SWP) sp|Q9FMX2|TCP7_ARATH (e_value=2e-66) Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1;; (*TAIR) AT5G23280.1 (e_value=1e-67) | Symbols: | TCP family transcription factor | chr5:7843017-7843769 FORWARD LENGTH=250;; (*ITAG) Solyc04g009180.1.1 (e_value=7e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2687517-2688317 transcript_region:SL2.40ch04:2687517..2688317+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00009423g0004.1 protein AED:0.21 eAED:0.21 QI:170|1|1|1|0.66|0.61|13|240|319; (*GB) gi|356515866|ref|XP_003526618.1| (e_value=5e-147) PREDICTED: uncharacterized protein LOC100817904 [Glycine max];; (*SWP) sp|Q6NRL0|PRXD1_XENLA (e_value=5e-30) Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1;; (*TAIR) AT1G44835.2 (e_value=1e-128) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr1:16939909-16942337 FORWARD LENGTH=308;; (*ITAG) Solyc06g060420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34817950-34824473 transcript_region:SL2.40ch06:34817950..34824473- functional_description:"YbaK/prolyl-tRNA synthetase (AHRD V1 *-*- D0P7L2_BRUSU); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00021798g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.8|1|0.5|0.4|5|1840|532; (*GB) gi|359476537|ref|XP_002268782.2| (e_value=2e-96) PREDICTED: uncharacterized protein LOC100263926 [Vitis vinifera];; (*TAIR) AT3G04160.2 (e_value=5e-71) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage. | chr3:1091647-1094296 REVERSE LENGTH=714;; (*ITAG) Solyc04g050760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:47393040-47398788 transcript_region:SL2.40ch04:47393040..47398788+ functional_description:"U11/U12 small nuclear ribonucleoprotein 48 kDa protein (AHRD V1 *-*- SNR48_HUMAN)"; NbS00021798g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|76 NbS00021798g0010.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0|0|4|0|227; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-37) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025781g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.5|1|0.4|0.33|6|0|297; (*GB) gi|356577710|ref|XP_003556967.1| (e_value=4e-110) PREDICTED: uncharacterized protein LOC100804019 [Glycine max];; (*TAIR) AT5G08540.1 (e_value=5e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2763914-2765431 FORWARD LENGTH=346;; (*ITAG) Solyc02g049070.2.1 (e_value=4e-159) genomic_reference:SL2.40ch02 gene_region:24167233-24181052 transcript_region:SL2.40ch02:24167233..24181052+ functional_description:"Genomic DNA chromosome 5 P1 clone MAH20 (AHRD V1 **-- Q9FNN4_ARATH)"; NbS00028042g0005.1 protein AED:0.13 eAED:0.13 QI:195|0.6|0.5|1|0.8|0.66|6|0|322; (*GB) gi|15824565|gb|AAL09397.1|AF307094_1 (e_value=8e-171) non-cell-autonomous protein pathway1 [Nicotiana tabacum];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=1e-60) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=3e-98) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087780.2.1 (e_value=2e-179) genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00009079g0001.1 protein AED:0.10 eAED:0.10 QI:147|0.6|0.66|1|0.8|0.66|6|120|322; (*GB) gi|358249128|ref|NP_001240253.1| (e_value=2e-153) uncharacterized protein LOC100780915 precursor [Glycine max];; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=8e-129) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=6e-130) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc01g095450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78449856-78452248 transcript_region:SL2.40ch01:78449856..78452248- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00036750g0004.1 protein AED:0.05 eAED:0.05 QI:253|1|1|1|0.4|0.66|6|407|293; (*GB) gi|255567453|ref|XP_002524706.1| (e_value=1e-89) cyclin d, putative [Ricinus communis];; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=8e-61) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1;; (*TAIR) AT4G03270.1 (e_value=6e-62) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc03g006670.2.1 (e_value=1e-124) genomic_reference:SL2.40ch03 gene_region:1249821-1251626 transcript_region:SL2.40ch03:1249821..1251626+ go_terms:GO:0004693 functional_description:"Cyclin D1 (AHRD V1 **** Q8GVE0_HELTU); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004693 NbS00036750g0002.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|198; (*GB) gi|302143452|emb|CBI22013.3| (e_value=1e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-33) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT5G44360.1 (e_value=3e-50) | Symbols: | FAD-binding Berberine family protein | chr5:17872100-17873698 REVERSE LENGTH=532;; (*ITAG) Solyc02g079440.1.1 (e_value=3e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38580436-38582052 transcript_region:SL2.40ch02:38580436..38582052- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00001197g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|236|651; (*GB) gi|147857536|emb|CAN80381.1| (e_value=0.0) hypothetical protein VITISV_015320 [Vitis vinifera];; (*SWP) sp|Q5F259|AN13B_MOUSE (e_value=4e-31) Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1;; (*TAIR) AT1G04780.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbC26213851g0001.1 protein AED:0.16 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|296085349|emb|CBI29081.3| (e_value=7e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G03500.1 (e_value=9e-19) | Symbols: | Ankyrin repeat family protein | chr4:1553453-1556571 FORWARD LENGTH=652;; (*ITAG) Solyc07g061750.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:61932745-61935454 transcript_region:SL2.40ch07:61932745..61935454+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00011814g0007.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0.46|0.8|1|1|15|0|454; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=2e-98) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=1e-81) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=1e-83) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc05g055100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64041830-64050665 transcript_region:SL2.40ch05:64041830..64050665- go_terms:GO:0005975 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; GO:0005975 NbS00011814g0008.1 protein AED:0.33 eAED:0.34 QI:0|0.06|0.12|0.87|0.66|0.87|16|0|537; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=2e-64) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=2e-51) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=1e-52) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc05g055100.1.1 (e_value=1e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64041830-64050665 transcript_region:SL2.40ch05:64041830..64050665- go_terms:GO:0005975 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; GO:0005975 NbS00003594g0006.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|0.66|3|0|185; (*GB) gi|359488913|ref|XP_002283359.2| (e_value=2e-36) PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=1e-28) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=2e-25) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=2e-47) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00003594g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|296278604|gb|ADH04266.1| (e_value=4e-36) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=5e-35) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=4e-36) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090370.1.1 (e_value=3e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75831429-75832094 transcript_region:SL2.40ch01:75831429..75832094- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00057980g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|0|0|2|487|588; (*GB) gi|356545843|ref|XP_003541343.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Glycine max];; (*SWP) sp|Q9CAA8|PP108_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1;; (*TAIR) AT1G68930.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:25918314-25920545 FORWARD LENGTH=743;; (*ITAG) Solyc05g010620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4853630-4855861 transcript_region:SL2.40ch05:4853630..4855861+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWW7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057980g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0.6|1|1|1|5|0|419; (*GB) gi|225425013|ref|XP_002267536.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253093 [Vitis vinifera];; (*SWP) sp|Q6AXX6|F213A_RAT (e_value=6e-29) Redox-regulatory protein FAM213A OS=Rattus norvegicus GN=Fam213a PE=1 SV=1;; (*TAIR) AT2G37240.1 (e_value=6e-13) | Symbols: | Thioredoxin superfamily protein | chr2:15640235-15641720 REVERSE LENGTH=248;; (*ITAG) Solyc05g010640.2.1 (e_value=9e-94) genomic_reference:SL2.40ch05 gene_region:4858635-4859857 transcript_region:SL2.40ch05:4858635..4859857- functional_description:"Unknown Protein (AHRD V1)"; NbS00001696g0011.1 protein AED:0.40 eAED:0.33 QI:201|0.88|0.7|1|0.88|0.9|10|0|526; (*GB) gi|225447336|ref|XP_002274263.1| (e_value=1e-46) PREDICTED: zinc finger CCCH domain-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q6H7U2|C3H13_ORYSJ (e_value=9e-27) Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1;; (*TAIR) AT3G21810.1 (e_value=4e-25) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr3:7684852-7688360 FORWARD LENGTH=437;; (*ITAG) Solyc12g005770.1.1 (e_value=5e-92) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:415079-426833 transcript_region:SL2.40ch12:415079..426833- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 13 (AHRD V1 ***- C3H13_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00001696g0012.1 protein AED:0.33 eAED:0.33 QI:216|1|0.88|1|0.5|0.77|9|0|266; (*GB) gi|225447340|ref|XP_002280526.1| (e_value=2e-141) PREDICTED: peroxisome biogenesis protein 22 [Vitis vinifera];; (*SWP) sp|Q9LSX7|PEX22_ARATH (e_value=9e-118) Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1;; (*TAIR) AT3G21865.1 (e_value=7e-119) | Symbols: PEX22 | peroxin 22 | chr3:7701308-7703218 REVERSE LENGTH=283;; (*ITAG) Solyc12g005760.1.1 (e_value=8e-163) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:402796-411288 transcript_region:SL2.40ch12:402796..411288+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 **-- Q9LSX7_ARATH)"; NbS00021895g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|0.83|0.85|7|178|368; (*GB) gi|224098942|ref|XP_002311326.1| (e_value=6e-169) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03441|RMD1_YEAST (e_value=5e-11) Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1;; (*TAIR) AT1G69380.1 (e_value=2e-162) | Symbols: | Protein of unknown function (DUF155) | chr1:26081729-26083431 REVERSE LENGTH=373;; (*ITAG) Solyc05g012690.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5881436-5887946 transcript_region:SL2.40ch05:5881436..5887946- functional_description:"Sporulation protein RMD1 (AHRD V1 *--- C1GIQ5_PARBD); contains Interpro domain(s) IPR003734 Protein of unknown function DUF155 "; NbS00006512g0009.1 protein AED:0.19 eAED:0.19 QI:314|1|1|1|0.6|0.5|6|404|327; (*GB) gi|359493159|ref|XP_003634527.1| (e_value=6e-175) PREDICTED: UDP-galactose transporter 2-like [Vitis vinifera];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=3e-85) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT1G34020.1 (e_value=6e-172) | Symbols: | Nucleotide-sugar transporter family protein | chr1:12367359-12368965 FORWARD LENGTH=335;; (*ITAG) Solyc12g056640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47981106-47984376 transcript_region:SL2.40ch12:47981106..47984376+ functional_description:"Integral membrane protein like (AHRD V1 ***- B6TS40_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00006512g0008.1 protein AED:0.26 eAED:0.26 QI:467|1|0.92|1|0.84|0.78|14|362|1156; (*GB) gi|328835772|dbj|BAK19067.1| (e_value=0.0) GIGANTEA [Ipomoea nil];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=0.0) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=0.0) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc12g056650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47985938-47998455 transcript_region:SL2.40ch12:47985938..47998455- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 2"; GO:0005515 NbS00040806g0007.1 protein AED:0.08 eAED:0.08 QI:468|1|1|1|0.59|0.65|23|151|406; (*GB) gi|297737456|emb|CBI26657.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9QUM7|MSH5_MOUSE (e_value=7e-69) MutS protein homolog 5 OS=Mus musculus GN=Msh5 PE=2 SV=1;; (*TAIR) AT3G20475.1 (e_value=0.0) | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143546-7150811 FORWARD LENGTH=807;; (*ITAG) Solyc10g018530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8636113-8651968 transcript_region:SL2.40ch10:8636113..8651968- go_terms:GO:0003684 functional_description:"DNA mismatch repair protein MutS (AHRD V1 **** D9S3H0_9FIRM); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0003684 NbS00040806g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.5|2|605|121 NbS00030950g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.66|0|0.33|3|0|126; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=1e-43) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q5Z6F0|TIP22_ORYSJ (e_value=7e-43) Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1;; (*TAIR) AT3G16240.1 (e_value=3e-40) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=3e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00030950g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|3|0|159; (*GB) gi|225431118|ref|XP_002265925.1| (e_value=4e-24) PREDICTED: thaumatin-like protein 1a [Vitis vinifera];; (*TAIR) AT1G75800.1 (e_value=5e-23) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330;; (*ITAG) Solyc02g083790.2.1 (e_value=1e-35) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00030950g0001.1 protein AED:0.09 eAED:0.10 QI:101|0.66|0.5|1|1|1|4|0|298; (*GB) gi|297741510|emb|CBI32642.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37300.2 (e_value=9e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. | chr2:15662845-15664599 REVERSE LENGTH=248;; (*ITAG) Solyc10g084420.1.1 (e_value=7e-50) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63288977-63290725 transcript_region:SL2.40ch10:63288977..63290725- functional_description:"Unknown Protein (AHRD V1)"; NbS00014223g0109.1 protein AED:0.09 eAED:0.09 QI:356|0.83|0.85|1|0.66|0.71|7|558|545 NbS00040120g0009.1 protein AED:0.08 eAED:0.08 QI:0|1|0.92|1|1|0.92|13|0|610; (*GB) gi|3913240|sp|O24133.1|CHLD_TOBAC (e_value=0.0) RecName: Full=Magnesium-chelatase subunit chlD, chloroplastic; Short=Mg-chelatase subunit D; AltName: Full=Mg-protoporphyrin IX chelatase; Flags: Precursor;; (*SWP) sp|O24133|CHLD_TOBAC (e_value=0.0) Magnesium-chelatase subunit chlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1;; (*TAIR) AT1G08520.1 (e_value=0.0) | Symbols: ALB1, ALB-1V, V157, PDE166, CHLD | ALBINA 1 | chr1:2696538-2700819 FORWARD LENGTH=760;; (*ITAG) Solyc04g015490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5692397-5708956 transcript_region:SL2.40ch04:5692397..5708956+ go_terms:GO:0017111,GO:0015995 functional_description:"Magnesium chelatase subunit D (AHRD V1 *-*- A8I531_CHLRE); contains Interpro domain(s) IPR011776 Magnesium chelatase, ATPase subunit D "; GO:0017111,GO:0015995 NbS00040120g0011.1 protein AED:0.03 eAED:0.03 QI:0|0.83|0.57|1|1|1|7|0|786; (*GB) gi|255557375|ref|XP_002519718.1| (e_value=0.0) Beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|Q9LJN4|BXL5_ARATH (e_value=0.0) Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2;; (*TAIR) AT3G19620.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:6815613-6818308 REVERSE LENGTH=781;; (*ITAG) Solyc01g079570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71151785-71157448 transcript_region:SL2.40ch01:71151785..71157448+ go_terms:GO:0005975 functional_description:"Beta xylosidase (AHRD V1 ***- Q6RXY3_FRAAN); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00040120g0010.1 protein AED:0.07 eAED:0.07 QI:19|0.66|0.85|1|1|1|7|258|350; (*GB) gi|225453778|ref|XP_002270462.1| (e_value=6e-164) PREDICTED: serine/threonine-protein kinase Aurora-3 [Vitis vinifera];; (*SWP) sp|O64629|AUR3_ARATH (e_value=5e-157) Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1;; (*TAIR) AT2G45490.1 (e_value=4e-158) | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747658-18749044 REVERSE LENGTH=288;; (*ITAG) Solyc04g009330.2.1 (e_value=2e-176) genomic_reference:SL2.40ch04 gene_region:2772793-2776023 transcript_region:SL2.40ch04:2772793..2776023+ go_terms:GO:0004713 functional_description:"Serine/threonine-protein kinase 12 (AHRD V1 **** B6SI45_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004713 NbS00013437g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|251; (*GB) gi|27529838|dbj|BAC53934.1| (e_value=5e-44) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT5G60800.1 (e_value=4e-20) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc11g069070.1.1 (e_value=5e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50742549-50744955 transcript_region:SL2.40ch11:50742549..50744955+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 *-*- B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00013437g0102.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|103 NbS00002153g0012.1 protein AED:0.10 eAED:0.10 QI:54|1|1|1|1|1|10|502|896; (*GB) gi|359497108|ref|XP_002269337.2| (e_value=0.0) PREDICTED: DNA repair endonuclease UVH1-like [Vitis vinifera];; (*SWP) sp|Q9LKI5|XPF_ARATH (e_value=0.0) DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2;; (*TAIR) AT5G41150.1 (e_value=0.0) | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonuclease, type II-like superfamily protein | chr5:16473044-16476919 REVERSE LENGTH=956;; (*ITAG) Solyc08g077800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58874072-58880667 transcript_region:SL2.40ch08:58874072..58880667+ go_terms:GO:0000014 functional_description:"DNA repair endonuclease XPF (AHRD V1 **-* C1J9L6_LIZAU); contains Interpro domain(s) IPR006166 DNA repair nuclease, XPF-type/Helicase "; GO:0000014 NbS00002153g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|1|1|1|6|211|287; (*GB) gi|359474420|ref|XP_003631460.1| (e_value=2e-99) PREDICTED: uncharacterized protein LOC100853434 [Vitis vinifera];; (*TAIR) AT4G17070.1 (e_value=8e-88) | Symbols: | peptidyl-prolyl cis-trans isomerases | chr4:9595523-9598066 REVERSE LENGTH=343;; (*ITAG) Solyc08g077790.2.1 (e_value=4e-120) genomic_reference:SL2.40ch08 gene_region:58868426-58873671 transcript_region:SL2.40ch08:58868426..58873671+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase-like 3 (AHRD V1 *-*- PPIL3_CHICK); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00002153g0014.1 protein AED:0.23 eAED:0.23 QI:33|0.83|0.84|1|0.83|0.76|13|414|447; (*GB) gi|225465123|ref|XP_002273039.1| (e_value=0.0) PREDICTED: BRCA1-associated protein-like [Vitis vinifera];; (*SWP) sp|Q7Z569|BRAP_HUMAN (e_value=2e-88) BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2;; (*TAIR) AT2G26000.2 (e_value=0.0) | Symbols: BRIZ2 | zinc finger (C3HC4-type RING finger) family protein | chr2:11082403-11085137 FORWARD LENGTH=479;; (*ITAG) Solyc03g120000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62561569-62567960 transcript_region:SL2.40ch03:62561569..62567960- go_terms:GO:0042802 functional_description:"RING finger protein (AHRD V1 **-- B6JVU3_SCHJY); contains Interpro domain(s) IPR011422 BRCA1-associated 2 "; GO:0042802 NbS00000125g0007.1 protein AED:0.21 eAED:0.21 QI:283|0.88|0.9|1|0.88|0.8|10|0|608; (*GB) gi|296082302|emb|CBI21307.3| (e_value=3e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22799|Y2349_ARATH (e_value=8e-106) Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2;; (*TAIR) AT2G33490.1 (e_value=6e-107) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623;; (*ITAG) Solyc02g094410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49518515-49525760 transcript_region:SL2.40ch02:49518515..49525760+ functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7LGA9_ARALY)"; NbS00000125g0002.1 protein AED:0.28 eAED:0.28 QI:89|1|1|1|0.9|0.90|11|321|277; (*GB) gi|225451543|ref|XP_002273840.1| (e_value=2e-106) PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q00497|AROK_SOLLC (e_value=3e-38) Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G26900.3 (e_value=5e-87) | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | chr3:9912314-9914424 REVERSE LENGTH=280;; (*ITAG) Solyc02g094420.2.1 (e_value=7e-141) genomic_reference:SL2.40ch02 gene_region:49525946-49527782 transcript_region:SL2.40ch02:49525946..49527782+ go_terms:GO:0005524 functional_description:"Shikimate kinase (AHRD V1 ***- B9N0W2_POPTR); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005524 NbC26240417g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|147779799|emb|CAN77093.1| (e_value=5e-25) hypothetical protein VITISV_026597 [Vitis vinifera];; (*TAIR) AT2G01610.1 (e_value=4e-26) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr2:274124-274792 REVERSE LENGTH=222;; (*ITAG) Solyc10g076730.1.1 (e_value=3e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00004010g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.4|0.5|1|1|1|6|340|248; (*GB) gi|224070033|ref|XP_002303105.1| (e_value=6e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT1G04130.1 (e_value=1e-45) | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1073465-1075374 FORWARD LENGTH=360;; (*ITAG) Solyc09g064390.2.1 (e_value=2e-70) genomic_reference:SL2.40ch09 gene_region:57159220-57163576 transcript_region:SL2.40ch09:57159220..57163576- go_terms:GO:0005048 functional_description:"Tetratricopeptide repeat protein 4 (AHRD V1 **-- B0WYL6_CULQU); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005048 NbS00004010g0002.1 protein AED:0.25 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|675; (*GB) gi|297744238|emb|CBI37208.3| (e_value=1e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G20310.1 (e_value=3e-28) | Symbols: RIN13 | RPM1 interacting protein 13 | chr2:8761328-8763083 REVERSE LENGTH=430;; (*ITAG) Solyc09g064420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57190374-57199174 transcript_region:SL2.40ch09:57190374..57199174- functional_description:"LOC100158433 protein (Fragment) (AHRD V1 *-*- B1WBD4_XENLA)"; NbS00044481g0005.1 protein AED:0.19 eAED:0.19 QI:203|1|1|1|1|1|6|455|249; (*GB) gi|350535435|ref|NP_001234450.1| (e_value=5e-144) Bax inhibitor [Solanum lycopersicum];; (*SWP) sp|Q9LD45|BI1_ARATH (e_value=5e-123) Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1;; (*TAIR) AT5G47120.1 (e_value=4e-124) | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 1 | chr5:19136071-19137585 FORWARD LENGTH=247;; (*ITAG) Solyc08g077980.2.1 (e_value=5e-145) genomic_reference:SL2.40ch08 gene_region:59033727-59036658 transcript_region:SL2.40ch08:59033727..59036658- go_terms:GO:0005515 functional_description:"Bax inhibitor (AHRD V1 ***- Q6U1L7_SOLLC); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005515 NbS00044481g0006.1 protein AED:0.28 eAED:0.28 QI:292|1|0.66|1|1|1|3|0|152; (*GB) gi|255581988|ref|XP_002531792.1| (e_value=2e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17010.1 (e_value=1e-37) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9576442-9577627 FORWARD LENGTH=160;; (*ITAG) Solyc08g077970.2.1 (e_value=4e-73) genomic_reference:SL2.40ch08 gene_region:59030320-59033426 transcript_region:SL2.40ch08:59030320..59033426- functional_description:"Unknown Protein (AHRD V1)"; NbS00009481g0005.1 protein AED:0.19 eAED:0.19 QI:336|1|0.66|1|0.5|0.66|3|336|180; (*GB) gi|225431869|ref|XP_002275498.1| (e_value=2e-40) PREDICTED: GATA transcription factor 16 [Vitis vinifera];; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=5e-34) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=3e-35) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc12g099370.1.1 (e_value=3e-65) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64886840-64888068 transcript_region:SL2.40ch12:64886840..64888068+ go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00009481g0004.1 protein AED:0.31 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|67 NbS00003267g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|28207685|gb|AAO32066.1| (e_value=7e-64) Erwinia induced protein 2 [Solanum tuberosum];; (*TAIR) AT5G17190.1 (e_value=5e-59) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5652310-5652702 FORWARD LENGTH=130;; (*ITAG) Solyc04g014490.1.1 (e_value=2e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4725303-4725698 transcript_region:SL2.40ch04:4725303..4725698+ go_terms:GO:0005515 functional_description:"Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)"; GO:0005515 NbS00024305g0004.1 protein AED:0.20 eAED:0.20 QI:415|0.94|0.83|1|0.82|0.83|18|0|972; (*GB) gi|255550167|ref|XP_002516134.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SMY8|FBL15_ARATH (e_value=0.0) F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2;; (*TAIR) AT4G33210.1 (e_value=0.0) | Symbols: SLOMO | F-box family protein | chr4:16015971-16020697 REVERSE LENGTH=990;; (*ITAG) Solyc08g061820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46762981-46772528 transcript_region:SL2.40ch08:46762981..46772528- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00003699g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|171; (*ITAG) Solyc05g044470.1.1 (e_value=3e-82) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:55706701-55707216 transcript_region:SL2.40ch05:55706701..55707216- go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00003699g0004.1 protein AED:0.24 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|161; (*GB) gi|356547091|ref|XP_003541951.1| (e_value=1e-19) PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Glycine max];; (*TAIR) AT4G26890.1 (e_value=3e-13) | Symbols: MAPKKK16 | mitogen-activated protein kinase kinase kinase 16 | chr4:13512072-13513406 FORWARD LENGTH=444;; (*ITAG) Solyc07g051930.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57797942-57799054 transcript_region:SL2.40ch07:57797942..57799054+ go_terms:GO:0004691 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00025652g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.33|1|1|3|0|103 NbS00029167g0003.1 protein AED:0.19 eAED:0.19 QI:92|1|0.5|1|1|1|2|0|229; (*GB) gi|416649|sp|Q03662.1|GSTX1_TOBAC (e_value=2e-104) RecName: Full=Probable glutathione S-transferase; AltName: Full=Auxin-induced protein PGNT1/PCNT110;; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=6e-106) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=1e-79) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc10g084960.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63636357-63637715 transcript_region:SL2.40ch10:63636357..63637715+ functional_description:"Glutathione S-transferase-like protein (AHRD V1 ***- A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00008649g0004.1 protein AED:0.20 eAED:0.20 QI:332|0.83|0.71|1|1|1|7|270|242; (*GB) gi|255570278|ref|XP_002526099.1| (e_value=5e-51) Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) [Ricinus communis];; (*SWP) sp|Q42533|BCCP1_ARATH (e_value=1e-43) Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2;; (*TAIR) AT5G16390.1 (e_value=1e-44) | Symbols: CAC1, CAC1A, BCCP, BCCP1 | chloroplastic acetylcoenzyme A carboxylase 1 | chr5:5361098-5363020 REVERSE LENGTH=280;; (*ITAG) Solyc06g069530.2.1 (e_value=3e-90) genomic_reference:SL2.40ch06 gene_region:39686045-39688714 transcript_region:SL2.40ch06:39686045..39688714- go_terms:GO:0003989,GO:0004642 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** Q7NZD6_CHRVO); contains Interpro domain(s) IPR001249 Acetyl-CoA biotin carboxyl carrier "; GO:0003989,GO:0004642 NbS00005376g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0|0|3|0|415; (*GB) gi|297835736|ref|XP_002885750.1| (e_value=0.0) hypothetical protein ARALYDRAFT_342773 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G04305.1 (e_value=2e-178) | Symbols: | Magnesium transporter CorA-like family protein | chr2:1501679-1503448 REVERSE LENGTH=434;; (*ITAG) Solyc10g047820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38238564-38240847 transcript_region:SL2.40ch10:38238564..38240847+ functional_description:"Transporter CorA family (AHRD V1 *-*- Q62C47_BURMA)"; NbS00005376g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.5|1|0.6|0.5|6|0|547; (*GB) gi|585273|sp|Q08276.1|HSP7M_SOLTU (e_value=0.0) RecName: Full=Heat shock 70 kDa protein, mitochondrial; Flags: Precursor;; (*SWP) sp|Q08276|HSP7M_SOLTU (e_value=0.0) Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1;; (*TAIR) AT5G09590.1 (e_value=0.0) | Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682;; (*ITAG) Solyc01g106210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85918285-85922197 transcript_region:SL2.40ch01:85918285..85922197+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- A2Q199_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00059236g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.62|0.44|1|0.87|0.88|9|0|555; (*GB) gi|33337947|gb|AAQ13595.1| (e_value=0.0) putative squalene epoxidase [Solanum lycopersicum];; (*SWP) sp|O48651|ERG1_PANGI (e_value=0.0) Squalene monooxygenase OS=Panax ginseng PE=2 SV=1;; (*TAIR) AT4G37760.1 (e_value=0.0) | Symbols: SQE3 | squalene epoxidase 3 | chr4:17744085-17746426 FORWARD LENGTH=525;; (*ITAG) Solyc00g085070.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:15174912-15178624 transcript_region:SL2.40ch00:15174912..15178624- go_terms:GO:0005515,GO:0008144 functional_description:"Squalene monooxygenase (AHRD V1 ***- Q506K3_DATIN); contains Interpro domain(s) IPR013698 Squalene epoxidase "; GO:0005515,GO:0008144 NbS00018848g0006.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.5|1|1|1|4|0|561; (*GB) gi|357454059|ref|XP_003597310.1| (e_value=0.0) Ankyrin repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=1e-176) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc11g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53193873-53196270 transcript_region:SL2.40ch11:53193873..53196270- functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00048085g0002.1 protein AED:0.38 eAED:0.49 QI:0|0|0|1|0|0|2|0|101; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=4e-26) hypothetical protein [Nicotiana tabacum]; NbS00004291g0002.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.2|1|1|5|0|251; (*GB) gi|225437539|ref|XP_002275815.1| (e_value=4e-21) PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=2e-18) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06680.1 (e_value=1e-22) | Symbols: | Ribosomal L29e protein family | chr3:2114402-2114877 REVERSE LENGTH=83;; (*ITAG) Solyc05g053440.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbS00007991g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|157; (*GB) gi|146336941|gb|ABQ23584.1| (e_value=2e-57) putative histone [Medicago truncatula];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=4e-58) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT3G45980.1 (e_value=6e-59) | Symbols: H2B, HTB9 | Histone superfamily protein | chr3:16897492-16897944 REVERSE LENGTH=150;; (*ITAG) Solyc11g007920.1.1 (e_value=3e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2160950-2161384 transcript_region:SL2.40ch11:2160950..2161384- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- A5BCC0_VITVI); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00007991g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.85|1|1|1|7|228|861; (*GB) gi|225448888|ref|XP_002263930.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241098 [Vitis vinifera];; (*SWP) sp|P29503|NEUR_DROME (e_value=8e-12) Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2;; (*TAIR) AT5G04460.3 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263695 FORWARD LENGTH=863;; (*ITAG) Solyc11g007910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00007991g0022.1 protein AED:0.30 eAED:0.72 QI:0|0|0|1|0|0.5|2|0|161; (*GB) gi|113205244|gb|AAT39318.2| (e_value=8e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00007991g0021.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.2|0.75|0.8|5|0|230 NbS00007991g0008.1 protein AED:0.99 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|146 NbS00007991g0023.1 protein AED:0.34 eAED:0.34 QI:2|0|0|0.5|0|0|2|0|242; (*GB) gi|359497031|ref|XP_003635403.1| (e_value=1e-101) PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis vinifera];; (*SWP) sp|Q2T9S3|RPC6_BOVIN (e_value=4e-30) DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1;; (*TAIR) AT5G23710.1 (e_value=2e-63) | Symbols: | DNA binding;DNA-directed RNA polymerases | chr5:7996528-7997220 REVERSE LENGTH=230;; (*ITAG) Solyc08g075580.1.1 (e_value=7e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:56904308-56904769 transcript_region:SL2.40ch08:56904308..56904769- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit F (AHRD V1 ***- B0XD81_CULQU); contains Interpro domain(s) IPR007832 RNA polymerase Rpc34 "; GO:0005634 NbS00007991g0024.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|0|0|2|0|169; (*GB) gi|359483677|ref|XP_003633000.1| (e_value=4e-49) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=4e-26) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=3e-27) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc08g075590.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56906117-56909996 transcript_region:SL2.40ch08:56906117..56909996- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00029755g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.6|1|1|0.6|5|0|427; (*GB) gi|359491342|ref|XP_002272638.2| (e_value=0.0) PREDICTED: probable pectate lyase P59-like [Vitis vinifera];; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=8e-175) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc06g071020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40014723-40016742 transcript_region:SL2.40ch06:40014723..40016742+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** B6TSP4_MAIZE); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00029755g0008.1 protein AED:0.11 eAED:0.11 QI:346|1|0.5|1|1|1|2|0|110; (*GB) gi|58200403|gb|AAW66457.1| (e_value=2e-40) isochorismate synthase [Capsicum annuum];; (*SWP) sp|Q9ZPC0|ICS_CATRO (e_value=2e-22) Isochorismate synthase, chloroplastic OS=Catharanthus roseus PE=1 SV=1;; (*TAIR) AT1G18870.1 (e_value=5e-20) | Symbols: ICS2, ATICS2 | isochorismate synthase 2 | chr1:6515486-6519176 FORWARD LENGTH=562;; (*ITAG) Solyc06g071030.2.1 (e_value=9e-42) genomic_reference:SL2.40ch06 gene_region:40017435-40026369 transcript_region:SL2.40ch06:40017435..40026369- go_terms:GO:0008909 functional_description:"Isochorismate synthase (AHRD V1 **** B0CN79_SOLLC); contains Interpro domain(s) IPR005801 ADC synthase IPR004561 Isochorismate synthase "; GO:0008909 NbS00029755g0011.1 protein AED:0.18 eAED:0.18 QI:0|0.76|0.64|1|0.69|0.64|14|390|468; (*GB) gi|161015879|gb|ABX55938.1| (e_value=0.0) isochorismate synthase [Nicotiana benthamiana];; (*SWP) sp|Q9ZPC0|ICS_CATRO (e_value=8e-175) Isochorismate synthase, chloroplastic OS=Catharanthus roseus PE=1 SV=1;; (*TAIR) AT1G18870.2 (e_value=4e-164) | Symbols: ICS2 | isochorismate synthase 2 | chr1:6515746-6519176 FORWARD LENGTH=512;; (*ITAG) Solyc06g071030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40017435-40026369 transcript_region:SL2.40ch06:40017435..40026369- go_terms:GO:0008909 functional_description:"Isochorismate synthase (AHRD V1 **** B0CN79_SOLLC); contains Interpro domain(s) IPR005801 ADC synthase IPR004561 Isochorismate synthase "; GO:0008909 NbS00029755g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.91|0.84|1|1|1|13|0|873; (*GB) gi|359491338|ref|XP_002267724.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265726, partial [Vitis vinifera];; (*SWP) sp|P0CB49|YLPM1_RAT (e_value=2e-57) YLP motif-containing protein 1 OS=Rattus norvegicus GN=Ylpm1 PE=1 SV=1;; (*TAIR) AT5G62760.3 (e_value=1e-151) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25204730-25209393 REVERSE LENGTH=644;; (*ITAG) Solyc06g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40025934-40042581 transcript_region:SL2.40ch06:40025934..40042581- functional_description:"YLP motif containing 1 (AHRD V1 *-*- D7FYE7_ECTSI)"; NbS00014342g0001.1 protein AED:0.26 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|62 NbS00055743g0007.1 protein AED:0.22 eAED:0.22 QI:241|1|0.6|1|0.75|0.6|5|491|138; (*GB) gi|255556538|ref|XP_002519303.1| (e_value=4e-66) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|C0LU16|MED21_ARATH (e_value=2e-63) Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1;; (*TAIR) AT4G04780.1 (e_value=2e-64) | Symbols: MED21 | mediator 21 | chr4:2432665-2433397 FORWARD LENGTH=139;; (*ITAG) Solyc02g080430.2.1 (e_value=7e-77) genomic_reference:SL2.40ch02 gene_region:39228823-39231117 transcript_region:SL2.40ch02:39228823..39231117- functional_description:"Mediator of RNA polymerase II transcription subunit 21 (AHRD V1 ***- MED21_CAEEL)"; NbS00055743g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.42|0.85|1|1|7|0|468; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=9e-154) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=8e-150) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.2 (e_value=5e-146) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405;; (*ITAG) Solyc02g080420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39222034-39228232 transcript_region:SL2.40ch02:39222034..39228232+ go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **** Q9LEB4_NICPL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00028244g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|153 NbS00028244g0014.1 protein AED:0.16 eAED:0.16 QI:580|0.6|0.66|0.83|0.6|0.66|6|0|201; (*GB) gi|388511032|gb|AFK43582.1| (e_value=5e-83) unknown [Lotus japonicus];; (*SWP) sp|Q9FHK0|SKI31_ARATH (e_value=8e-55) F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1;; (*TAIR) AT5G45360.1 (e_value=6e-56) | Symbols: | F-box family protein | chr5:18384783-18386670 REVERSE LENGTH=316;; (*ITAG) Solyc08g075380.2.1 (e_value=3e-93) genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00028244g0016.1 protein AED:0.22 eAED:0.22 QI:177|1|0.90|1|0.9|0.90|11|0|606; (*GB) gi|296085461|emb|CBI29193.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LPJ4|AB2E_ARATH (e_value=0.0) ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1;; (*TAIR) AT4G19210.1 (e_value=0.0) | Symbols: ATRLI2, RLI2 | RNAse l inhibitor protein 2 | chr4:10501906-10504776 FORWARD LENGTH=605;; (*ITAG) Solyc08g075360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56666411-56671614 transcript_region:SL2.40ch08:56666411..56671614- go_terms:GO:0008428 functional_description:"Zinc import ATP-binding protein ZnuC (AHRD V1 *-*- ZNUC_RICFE); contains Interpro domain(s) IPR013283 ABC transporter, ABCE "; GO:0008428 NbS00028244g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|199 NbS00020149g0022.1 protein AED:0.04 eAED:0.04 QI:231|1|1|1|1|1|3|22|407; (*GB) gi|225457885|ref|XP_002279280.1| (e_value=1e-159) PREDICTED: uncharacterized protein LOC100260855 [Vitis vinifera];; (*TAIR) AT1G11320.1 (e_value=2e-121) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3807241-3808728 FORWARD LENGTH=424;; (*ITAG) Solyc04g015400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5608921-5612886 transcript_region:SL2.40ch04:5608921..5612886- functional_description:"Os06g0724200 protein (Fragment) (AHRD V1 ***- Q0D9E9_ORYSJ)"; NbS00020149g0025.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.5|1|0.33|0.75|4|255|1012; (*GB) gi|224077350|ref|XP_002305223.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc11g006040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:846032-849515 transcript_region:SL2.40ch11:846032..849515- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00020149g0019.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|1|1|1|5|198|487; (*GB) gi|255563776|ref|XP_002522889.1| (e_value=0.0) ammonium transporter, putative [Ricinus communis];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=0.0) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=0.0) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc10g076480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58796692-58799491 transcript_region:SL2.40ch10:58796692..58799491+ go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9HCZ0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00020149g0011.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|76573351|gb|ABA46780.1| (e_value=1e-74) unknown [Solanum tuberosum];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=3e-58) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=3e-59) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc04g015370.2.1 (e_value=8e-79) genomic_reference:SL2.40ch04 gene_region:5576931-5582053 transcript_region:SL2.40ch04:5576931..5582053- go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00020149g0020.1 protein AED:0.30 eAED:0.32 QI:145|0.85|0.86|1|0.80|0.72|22|458|695; (*GB) gi|317411670|sp|A5B4D2.1|GUFP_VITVI (e_value=0.0) RecName: Full=Translation factor GUF1 homolog, chloroplastic; AltName: Full=Elongation factor 4 homolog; Short=EF-4; AltName: Full=GTPase GUF1 homolog; AltName: Full=Ribosomal back-translocase; Flags: Precursor;; (*SWP) sp|A5B4D2|GUFP_VITVI (e_value=0.0) Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera GN=VITISV_013255 PE=3 SV=1;; (*TAIR) AT5G08650.1 (e_value=0.0) | Symbols: | Small GTP-binding protein | chr5:2806533-2813220 REVERSE LENGTH=681;; (*ITAG) Solyc04g015450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5642257-5658109 transcript_region:SL2.40ch04:5642257..5658109- go_terms:GO:0043022,GO:0003746 functional_description:"GTP-binding protein lepA (AHRD V1 **** A8YK29_MICAE); contains Interpro domain(s) IPR006297 GTP-binding protein LepA "; GO:0043022,GO:0003746 NbS00020149g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|957; (*GB) gi|225430498|ref|XP_002283327.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SZ52|PP344_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1;; (*TAIR) AT4G31850.1 (e_value=0.0) | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112;; (*ITAG) Solyc04g015440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5628290-5631920 transcript_region:SL2.40ch04:5628290..5631920+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00027701g0004.1 protein AED:0.24 eAED:0.24 QI:245|1|0.88|1|0.87|0.66|9|0|274; (*GB) gi|359486786|ref|XP_002283148.2| (e_value=1e-119) PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Vitis vinifera];; (*SWP) sp|Q9M2S6|SDIR1_ARATH (e_value=1e-99) E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1;; (*TAIR) AT3G55530.1 (e_value=9e-101) | Symbols: SDIR1 | RING/U-box superfamily protein | chr3:20595300-20597188 REVERSE LENGTH=273;; (*ITAG) Solyc05g053040.2.1 (e_value=2e-132) genomic_reference:SL2.40ch05 gene_region:62337827-62341566 transcript_region:SL2.40ch05:62337827..62341566+ go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 *-*- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00027701g0005.1 protein AED:0.15 eAED:0.48 QI:0|0|0.33|1|0|0|3|315|103 NbS00007879g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|77 NbS00027690g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|214; (*GB) gi|255566524|ref|XP_002524247.1| (e_value=4e-137) protein with unknown function [Ricinus communis];; (*SWP) sp|Q40193|RB11C_LOTJA (e_value=2e-133) Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=6e-133) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc03g079900.2.1 (e_value=4e-156) genomic_reference:SL2.40ch03 gene_region:45334174-45335900 transcript_region:SL2.40ch03:45334174..45335900+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00027690g0028.1 protein AED:0.08 eAED:0.12 QI:0|0.77|0.5|1|1|1|10|0|782; (*GB) gi|359486608|ref|XP_002277667.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246247 [Vitis vinifera];; (*SWP) sp|Q3B7M6|NEDD1_BOVIN (e_value=4e-39) Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1;; (*TAIR) AT5G05970.1 (e_value=0.0) | Symbols: NEDD1 | Transducin/WD40 repeat-like superfamily protein | chr5:1795464-1799313 FORWARD LENGTH=781;; (*ITAG) Solyc03g079920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45390255-45398120 transcript_region:SL2.40ch03:45390255..45398120+ functional_description:"WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00027690g0018.1 protein AED:0.22 eAED:0.23 QI:140|0.6|0.5|1|0.8|0.66|6|0|306; (*GB) gi|224119658|ref|XP_002331214.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72440.1 (e_value=2e-20) | Symbols: EDA25, SWA2 | CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043;; (*ITAG) Solyc03g123530.2.1 (e_value=2e-49) genomic_reference:SL2.40ch03 gene_region:64408487-64419085 transcript_region:SL2.40ch03:64408487..64419085+ go_terms:GO:0005515,GO:0003677 functional_description:"CCAAT-box-binding transcription factor-like protein (AHRD V1 **** Q6YU01_ORYSJ); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; GO:0005515,GO:0003677 NbS00027690g0029.1 protein AED:0.09 eAED:0.10 QI:0|0.85|0.62|1|1|1|8|0|627; (*GB) gi|296086155|emb|CBI31596.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=0.0) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT3G46850.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:17256338-17259442 FORWARD LENGTH=736;; (*ITAG) Solyc03g079890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45297048-45300208 transcript_region:SL2.40ch03:45297048..45300208- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00027690g0023.1 protein AED:0.13 eAED:0.13 QI:70|1|1|1|1|1|3|375|257; (*GB) gi|225449374|ref|XP_002282374.1| (e_value=7e-104) PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=5e-65) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT2G39795.1 (e_value=4e-66) | Symbols: | Mitochondrial glycoprotein family protein | chr2:16597026-16598028 FORWARD LENGTH=250;; (*ITAG) Solyc03g079930.2.1 (e_value=5e-147) genomic_reference:SL2.40ch03 gene_region:45398282-45399790 transcript_region:SL2.40ch03:45398282..45399790- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7LDS6_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00027690g0030.1 protein AED:0.17 eAED:0.17 QI:0|0.81|0.75|0.91|0.72|0.66|12|0|577; (*GB) gi|255566514|ref|XP_002524242.1| (e_value=0.0) zinc ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=0.0) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=0.0) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc03g079910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45336512-45340788 transcript_region:SL2.40ch03:45336512..45340788- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7LDT1_ARALY); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00039446g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|474; (*GB) gi|224066289|ref|XP_002302066.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23487|BH003_ARATH (e_value=2e-162) Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1;; (*TAIR) AT4G16430.1 (e_value=1e-163) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:9267599-9269002 FORWARD LENGTH=467;; (*ITAG) Solyc06g083980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45552408-45553841 transcript_region:SL2.40ch06:45552408..45553841- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00039446g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|372; (*ITAG) Solyc06g008570.1.1 (e_value=8e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:2465155-2467185 transcript_region:SL2.40ch06:2465155..2467185+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039446g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|225; (*ITAG) Solyc06g008570.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:2465155-2467185 transcript_region:SL2.40ch06:2465155..2467185+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007028g0009.1 protein AED:0.00 eAED:0.00 QI:107|1|1|1|1|1|3|123|386; (*GB) gi|359494364|ref|XP_002263396.2| (e_value=4e-101) PREDICTED: uncharacterized protein At4g26485 [Vitis vinifera];; (*SWP) sp|P0C8L4|Y4648_ARATH (e_value=1e-55) Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1;; (*TAIR) AT1G55790.1 (e_value=6e-69) | Symbols: | Domain of unknown function (DUF2431) | chr1:20852685-20856069 REVERSE LENGTH=515;; (*ITAG) Solyc07g065920.2.1 (e_value=3e-112) genomic_reference:SL2.40ch07 gene_region:64725051-64727923 transcript_region:SL2.40ch07:64725051..64727923+ go_terms:GO:0003676 functional_description:"Ferredoxin-fold anticodon-binding domain-containing protein 1 (AHRD V1 *--* FDXA1_HUMAN); contains Interpro domain(s) IPR019446 Domain of unknown function DUF2431 "; GO:0003676 NbS00007028g0010.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|0.33|3|0|360; (*GB) gi|359494364|ref|XP_002263396.2| (e_value=1e-90) PREDICTED: uncharacterized protein At4g26485 [Vitis vinifera];; (*SWP) sp|P0C8L4|Y4648_ARATH (e_value=2e-47) Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1;; (*TAIR) AT1G55790.1 (e_value=9e-65) | Symbols: | Domain of unknown function (DUF2431) | chr1:20852685-20856069 REVERSE LENGTH=515;; (*ITAG) Solyc07g065920.2.1 (e_value=1e-105) genomic_reference:SL2.40ch07 gene_region:64725051-64727923 transcript_region:SL2.40ch07:64725051..64727923+ go_terms:GO:0003676 functional_description:"Ferredoxin-fold anticodon-binding domain-containing protein 1 (AHRD V1 *--* FDXA1_HUMAN); contains Interpro domain(s) IPR019446 Domain of unknown function DUF2431 "; GO:0003676 NbS00016943g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.75|1|1|4|0|257; (*GB) gi|359477707|ref|XP_002280754.2| (e_value=5e-87) PREDICTED: serine/threonine-protein kinase fray2-like [Vitis vinifera];; (*SWP) sp|Q6P9R2|OXSR1_MOUSE (e_value=4e-27) Serine/threonine-protein kinase OSR1 OS=Mus musculus GN=Oxsr1 PE=1 SV=1;; (*TAIR) AT4G14480.1 (e_value=8e-78) | Symbols: | Protein kinase superfamily protein | chr4:8330081-8331544 REVERSE LENGTH=487;; (*ITAG) Solyc06g053730.1.1 (e_value=5e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33075552-33077117 transcript_region:SL2.40ch06:33075552..33077117+ go_terms:GO:0004702,GO:0042802 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004702,GO:0042802 NbS00016943g0207.1 protein AED:0.03 eAED:0.03 QI:84|1|1|1|1|1|2|44|306 NbS00016943g0208.1 protein AED:0.28 eAED:0.55 QI:0|0|0|1|0|0|3|0|118 NbS00042252g0007.1 protein AED:0.23 eAED:0.24 QI:6|0.75|0.61|1|0.75|0.84|13|506|946; (*GB) gi|356577692|ref|XP_003556958.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein YLR241W-like [Glycine max];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=2e-22) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT1G58520.1 (e_value=0.0) | Symbols: RXW8 | lipases;hydrolases, acting on ester bonds | chr1:21733543-21738165 FORWARD LENGTH=746;; (*ITAG) Solyc12g088230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62114857-62122490 transcript_region:SL2.40ch12:62114857..62122490- go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00054400g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|297737651|emb|CBI26852.3| (e_value=1e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G23220.1 (e_value=3e-19) | Symbols: | Dynein light chain type 1 family protein | chr1:8242614-8244136 FORWARD LENGTH=129;; (*ITAG) Solyc01g005460.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:317899-320836 transcript_region:SL2.40ch01:317899..320836- go_terms:GO:0042803 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 ***- C1BWV4_ESOLU); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00005003g0016.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|0|2|28|231; (*GB) gi|255574145|ref|XP_002527988.1| (e_value=2e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G31330.1 (e_value=4e-120) | Symbols: | Protein of unknown function, DUF599 | chr4:15202354-15203151 FORWARD LENGTH=239;; (*ITAG) Solyc12g096310.1.1 (e_value=6e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63628876-63632224 transcript_region:SL2.40ch12:63628876..63632224+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00005003g0014.1 protein AED:0.20 eAED:0.20 QI:79|1|1|1|0.6|0.66|6|145|249; (*GB) gi|82623405|gb|ABB87117.1| (e_value=4e-142) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=5e-135) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT5G10360.1 (e_value=5e-135) | Symbols: EMB3010, RPS6B | Ribosomal protein S6e | chr5:3258734-3260142 REVERSE LENGTH=249;; (*ITAG) Solyc08g006040.2.1 (e_value=2e-145) genomic_reference:SL2.40ch08 gene_region:798845-801415 transcript_region:SL2.40ch08:798845..801415- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00005003g0015.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|27085290|gb|AAN85436.1| (e_value=4e-49) acyltransferase 2 [Capsicum chinense];; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=1e-26) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=4e-18) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc05g015800.2.1 (e_value=2e-49) genomic_reference:SL2.40ch05 gene_region:12077217-12079028 transcript_region:SL2.40ch05:12077217..12079028+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbC23911994g0001.1 protein AED:0.00 eAED:0.00 QI:32|-1|0|1|-1|1|1|0|80; (*GB) gi|6226510|sp|Q9ZSK5.1|ZOG_PHALU (e_value=4e-32) RecName: Full=Zeatin O-glucosyltransferase; AltName: Full=Trans-zeatin O-beta-D-glucosyltransferase;; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-33) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G29730.1 (e_value=2e-19) | Symbols: UGT71D1 | UDP-glucosyl transferase 71D1 | chr2:12703652-12705055 FORWARD LENGTH=467;; (*ITAG) Solyc05g012670.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5875384-5876718 transcript_region:SL2.40ch05:5875384..5876718+ go_terms:GO:0047209 functional_description:"Glucosyltransferase-3 (AHRD V1 **** Q8S9A6_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbC25017546g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|122239909|sp|Q94FM7.2|C71DK_TOBAC (e_value=1e-124) RecName: Full=5-epiaristolochene 1,3-dihydroxylase; Short=NtEAH; AltName: Full=Cytochrome P450 71D20;; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=4e-126) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26310.1 (e_value=1e-23) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc04g083140.1.1 (e_value=7e-96) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00029149g0013.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.4|1|0.5|0.2|5|0|203; (*GB) gi|224127138|ref|XP_002319997.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09910.1 (e_value=1e-65) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc11g011290.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4333175-4339288 transcript_region:SL2.40ch11:4333175..4339288+ go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00029149g0014.1 protein AED:0.21 eAED:0.23 QI:0|0.92|0.93|1|0.78|0.86|15|12|628; (*GB) gi|255572591|ref|XP_002527229.1| (e_value=0.0) lyase, putative [Ricinus communis];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=4e-23) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT2G22620.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc11g011300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4340301-4347968 transcript_region:SL2.40ch11:4340301..4347968+ go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00040430g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=2e-23) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=2e-23) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074400.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58000263-58001192 transcript_region:SL2.40ch04:58000263..58001192- functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00003278g0005.1 protein AED:0.07 eAED:0.07 QI:470|0.75|0.4|1|1|1|5|0|75; (*GB) gi|224112613|ref|XP_002316241.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|P59277|SYP81_ARATH (e_value=3e-24) Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2;; (*TAIR) AT1G51740.1 (e_value=2e-25) | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin of plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310;; (*ITAG) Solyc04g071730.2.1 (e_value=6e-26) genomic_reference:SL2.40ch04 gene_region:56289457-56294725 transcript_region:SL2.40ch04:56289457..56294725+ go_terms:GO:0005484 functional_description:"Syntaxin 81 (AHRD V1 ***- B6TDT7_MAIZE); contains Interpro domain(s) IPR019529 SNARE-complex protein Syntaxin-18 N-terminal "; GO:0005484 NbS00021076g0005.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|297839527|ref|XP_002887645.1| (e_value=4e-40) hypothetical protein ARALYDRAFT_895539 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C9K2|CP123_ARATH (e_value=9e-39) Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1;; (*TAIR) AT1G76560.1 (e_value=7e-40) | Symbols: CP12-3 | CP12 domain-containing protein 3 | chr1:28728285-28728689 FORWARD LENGTH=134;; (*ITAG) Solyc04g082910.1.1 (e_value=2e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63994658-63994921 transcript_region:SL2.40ch04:63994658..63994921+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003823 Protein of unknown function CP12 "; NbS00021076g0013.1 protein AED:0.10 eAED:0.10 QI:146|0.9|0.90|1|0.6|0.72|11|203|391; (*GB) gi|359491879|ref|XP_002273598.2| (e_value=6e-178) PREDICTED: probable inactive serine/threonine-protein kinase bub1 [Vitis vinifera];; (*SWP) sp|Q54CV5|BUB1_DICDI (e_value=4e-32) Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1;; (*TAIR) AT2G33560.2 (e_value=1e-151) | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited by benzymidazol 1) | chr2:14213810-14215918 REVERSE LENGTH=396;; (*ITAG) Solyc04g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63987936-63992486 transcript_region:SL2.40ch04:63987936..63992486- functional_description:"Mitotic checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- BUB1_MOUSE); contains Interpro domain(s) IPR013212 Mad3/BUB1 homology region 1 "; NbS00021076g0003.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224086130|ref|XP_002307825.1| (e_value=5e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S709|U2AFA_ARATH (e_value=7e-61) Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1;; (*TAIR) AT1G27650.1 (e_value=6e-62) | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small subunit, putative | chr1:9615152-9616042 FORWARD LENGTH=296;; (*ITAG) Solyc10g083640.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62756425-62760116 transcript_region:SL2.40ch10:62756425..62760116- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00021076g0015.1 protein AED:0.30 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|114 NbS00037132g0002.1 protein AED:0.08 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|204; (*GB) gi|225440226|ref|XP_002278583.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100249911 [Vitis vinifera];; (*ITAG) Solyc08g067000.2.1 (e_value=3e-39) genomic_reference:SL2.40ch08 gene_region:53099868-53103410 transcript_region:SL2.40ch08:53099868..53103410+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004468g0001.1 protein AED:0.00 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|729; (*GB) gi|224114581|ref|XP_002316801.1| (e_value=6e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15095.1 (e_value=4e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). | chr3:5081996-5084050 FORWARD LENGTH=684;; (*ITAG) Solyc07g062730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62648976-62651117 transcript_region:SL2.40ch07:62648976..62651117+ functional_description:"Chloroplast protein HCF243 (AHRD V1 *-*- Q9LIM5_ARATH)"; NbS00009005g0014.1 protein AED:0.31 eAED:0.31 QI:124|0|0.5|1|0|0.5|4|192|115; (*TAIR) AT2G40780.1 (e_value=6e-14) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:17021875-17022748 FORWARD LENGTH=171;; (*ITAG) Solyc05g052180.2.1 (e_value=1e-30) genomic_reference:SL2.40ch05 gene_region:61608062-61610738 transcript_region:SL2.40ch05:61608062..61610738- go_terms:GO:0005515 functional_description:"Translation initiation factor 1a (AHRD V1 *--- Q1HQA3_BOMMO); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0005515 NbS00009005g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|102; (*ITAG) Solyc03g098650.2.1 (e_value=3e-26) genomic_reference:SL2.40ch03 gene_region:54396043-54397530 transcript_region:SL2.40ch03:54396043..54397530+ go_terms:GO:0030001 functional_description:"ATFP3 (AHRD V1 *-*- B6U4D0_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00009005g0002.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|863; (*GB) gi|224127876|ref|XP_002329199.1| (e_value=4e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHK4|Y5519_ARATH (e_value=4e-19) Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1;; (*TAIR) AT5G05190.1 (e_value=3e-20) | Symbols: | Protein of unknown function (DUF3133) | chr5:1541853-1543875 FORWARD LENGTH=615;; (*ITAG) Solyc03g095610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50236833-50240242 transcript_region:SL2.40ch03:50236833..50240242+ go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00009005g0003.1 protein AED:0.18 eAED:0.19 QI:267|1|0.5|1|0|1|2|0|537; (*GB) gi|224128031|ref|XP_002329237.1| (e_value=3e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05180.1 (e_value=7e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1536924-1538318 FORWARD LENGTH=432;; (*ITAG) Solyc03g095600.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:50224682-50226334 transcript_region:SL2.40ch03:50224682..50226334+ functional_description:"CENP-E like kinetochore protein (AHRD V1 *-*- B6SHI8_MAIZE)"; NbS00042494g0005.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|0|0|2|0|157; (*GB) gi|58042457|gb|AAW63669.1| (e_value=7e-73) NADH dehydrogenase subunit 2 [Lonicera sp. Bergthorsson 0301];; (*SWP) sp|O05000|NU2M_ARATH (e_value=4e-63) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=4e-68) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g125990.1.1 (e_value=6e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00013757g0003.1 protein AED:0.08 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|359493151|ref|XP_003634523.1| (e_value=5e-33) PREDICTED: uncharacterized protein LOC100854843 [Vitis vinifera];; (*TAIR) AT4G09890.1 (e_value=7e-22) | Symbols: | Protein of unknown function (DUF3511) | chr4:6218501-6218764 FORWARD LENGTH=87;; (*ITAG) Solyc04g051470.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49730088-49730327 transcript_region:SL2.40ch04:49730088..49730327- functional_description:"Unknown Protein (AHRD V1)"; NbS00013757g0014.1 protein AED:0.00 eAED:0.00 QI:189|1|1|1|1|1|2|487|171; (*GB) gi|356576079|ref|XP_003556162.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100776918 [Glycine max];; (*TAIR) AT1G34000.1 (e_value=1e-53) | Symbols: OHP2 | one-helix protein 2 | chr1:12358151-12358902 REVERSE LENGTH=172;; (*ITAG) Solyc04g071930.2.1 (e_value=7e-71) genomic_reference:SL2.40ch04 gene_region:56538553-56540723 transcript_region:SL2.40ch04:56538553..56540723- functional_description:"One helix protein 2 (AHRD V1 **-- B9H7V8_POPTR)"; NbS00013757g0004.1 protein AED:0.09 eAED:0.10 QI:0|1|0.71|1|1|1|7|0|552; (*GB) gi|359480867|ref|XP_003632535.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=4e-156) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=2e-156) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc04g071920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56533615-56536340 transcript_region:SL2.40ch04:56533615..56536340- go_terms:GO:0005515,GO:0016301 functional_description:"Cell division protein kinase 13 (AHRD V1 *-** CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00013757g0015.1 protein AED:0.32 eAED:0.32 QI:254|1|1|1|1|1|2|163|280; (*GB) gi|50346893|gb|AAT75153.1| (e_value=3e-174) short-chain dehydrogenase/reductase [Solanum tuberosum];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=9e-138) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=7e-139) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc04g071940.2.1 (e_value=2e-175) genomic_reference:SL2.40ch04 gene_region:56541320-56546303 transcript_region:SL2.40ch04:56541320..56546303- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00018371g0002.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|296089919|emb|CBI39738.3| (e_value=1e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FM67|TI205_ARATH (e_value=9e-90) Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V PE=2 SV=1;; (*TAIR) AT5G55710.1 (e_value=7e-91) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22554995-22555624 REVERSE LENGTH=209;; (*ITAG) Solyc12g015680.1.1 (e_value=1e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5664926-5665519 transcript_region:SL2.40ch12:5664926..5665519+ functional_description:"Ycf60 protein (AHRD V1 **-- Q8DJZ7_THEEB)"; NbS00018371g0001.1 protein AED:0.10 eAED:0.10 QI:427|0.66|0.5|1|1|1|4|1347|392; (*GB) gi|225461874|ref|XP_002264382.1| (e_value=4e-139) PREDICTED: DNA damage response protein WSS1 [Vitis vinifera];; (*SWP) sp|P38838|WSS1_YEAST (e_value=8e-19) DNA damage response protein WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1;; (*TAIR) AT1G55915.1 (e_value=5e-121) | Symbols: | zinc ion binding | chr1:20907663-20909429 FORWARD LENGTH=404;; (*ITAG) Solyc12g015660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5655855-5659081 transcript_region:SL2.40ch12:5655855..5659081- go_terms:GO:0005622 functional_description:"Zinc ion binding protein (AHRD V1 **-- D7KN38_ARALY); contains Interpro domain(s) IPR013536 WLM "; GO:0005622 NbS00003170g0001.1 protein AED:0.33 eAED:0.33 QI:14|1|0.75|1|1|1|4|277|302; (*GB) gi|225463707|ref|XP_002262794.1| (e_value=1e-95) PREDICTED: uncharacterized protein LOC100250801 [Vitis vinifera];; (*TAIR) AT5G04840.1 (e_value=4e-68) | Symbols: | bZIP protein | chr5:1406005-1407648 FORWARD LENGTH=307;; (*ITAG) Solyc11g006490.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1168446-1172236 transcript_region:SL2.40ch11:1168446..1172236+ functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LW03_ARALY)"; NbS00003170g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|339; (*GB) gi|359487025|ref|XP_002266714.2| (e_value=7e-158) PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera];; (*SWP) sp|Q54NS9|AIFA_DICDI (e_value=4e-40) Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1;; (*TAIR) AT3G44190.1 (e_value=3e-154) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367;; (*ITAG) Solyc11g006540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1191915-1194459 transcript_region:SL2.40ch11:1191915..1194459- go_terms:GO:0055114 functional_description:"FAD-dependent pyridine nucleotide-disulphide oxidoreductase (AHRD V1 **-- D3M425_9ACTO); contains Interpro domain(s) IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region "; GO:0055114 NbS00003170g0012.1 protein AED:0.28 eAED:0.28 QI:115|1|1|1|0.85|0.87|8|563|307; (*GB) gi|86558916|gb|ABD03941.1| (e_value=0.0) urate oxidase [Nicotiana tabacum];; (*SWP) sp|P04670|URIC1_SOYBN (e_value=6e-168) Uricase-2 isozyme 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT2G26230.1 (e_value=2e-166) | Symbols: | uricase / urate oxidase / nodulin 35, putative | chr2:11164956-11166968 FORWARD LENGTH=309;; (*ITAG) Solyc11g006550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1196006-1201138 transcript_region:SL2.40ch11:1196006..1201138- go_terms:GO:0004846 functional_description:"Uricase (AHRD V1 ***- A2SXR3_SOLLC); contains Interpro domain(s) IPR002042 Uricase "; GO:0004846 NbS00003170g0014.1 protein AED:0.42 eAED:0.47 QI:0|0.37|0.22|0.66|0.87|0.88|9|0|235; (*GB) gi|255555154|ref|XP_002518614.1| (e_value=3e-110) Charged multivesicular body protein, putative [Ricinus communis];; (*SWP) sp|Q5RBR3|CHMP5_PONAB (e_value=9e-40) Charged multivesicular body protein 5 OS=Pongo abelii GN=CHMP5 PE=2 SV=1;; (*TAIR) AT3G10640.1 (e_value=1e-104) | Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324905 REVERSE LENGTH=235;; (*ITAG) Solyc05g055170.2.1 (e_value=6e-117) genomic_reference:SL2.40ch05 gene_region:64073846-64078030 transcript_region:SL2.40ch05:64073846..64078030- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 5 (AHRD V1 **-- B6TYU1_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00057053g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.66|0.85|7|279|385; (*GB) gi|342730594|gb|AEL33280.1| (e_value=0.0) putative auxin-induced protein [Camellia sinensis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=6e-54) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G19185.1 (e_value=1e-156) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:10489201-10491488 REVERSE LENGTH=398;; (*ITAG) Solyc12g096160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63527617-63533159 transcript_region:SL2.40ch12:63527617..63533159- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00028999g0008.1 protein AED:0.26 eAED:0.26 QI:84|1|1|1|0.8|0.66|6|399|150; (*GB) gi|82623419|gb|ABB87124.1| (e_value=4e-85) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q9CAX6|RS142_ARATH (e_value=3e-80) 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1;; (*TAIR) AT3G11510.1 (e_value=2e-81) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=7e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00028999g0011.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.4|1|0.25|0.2|5|0|295; (*GB) gi|225440825|ref|XP_002282116.1| (e_value=1e-128) PREDICTED: abhydrolase domain-containing protein 11 [Vitis vinifera];; (*TAIR) AT3G52570.1 (e_value=3e-116) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:19501145-19502795 FORWARD LENGTH=335;; (*ITAG) Solyc10g083270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62426455-62429554 transcript_region:SL2.40ch10:62426455..62429554+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LY00_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00057036g0004.1 protein AED:0.01 eAED:0.01 QI:162|0.8|0.66|1|0.4|0.33|6|387|203; (*GB) gi|224075878|ref|XP_002304809.1| (e_value=2e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VKV8|U0468_DROME (e_value=4e-122) UPF0468 protein CG5343 OS=Drosophila melanogaster GN=CG5343 PE=1 SV=1;; (*TAIR) AT3G12300.1 (e_value=3e-128) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | chr3:3921787-3923092 REVERSE LENGTH=190;; (*ITAG) Solyc01g096610.2.1 (e_value=9e-139) genomic_reference:SL2.40ch01 gene_region:79443444-79447556 transcript_region:SL2.40ch01:79443444..79447556+ go_terms:GO:0005515,GO:0003700 functional_description:"UPF0468 protein C16orf80 homolog (AHRD V1 ***- C1BNI4_9MAXI); contains Interpro domain(s) IPR007714 Protein of unknown function DUF667 "; GO:0005515,GO:0003700 NbS00018264g0007.1 protein AED:0.33 eAED:0.33 QI:254|1|1|1|0.84|0.92|14|376|405; (*GB) gi|255541138|ref|XP_002511633.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5XF59|HIBC4_ARATH (e_value=2e-175) 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1;; (*TAIR) AT3G60510.1 (e_value=1e-176) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr3:22357141-22360003 REVERSE LENGTH=401;; (*ITAG) Solyc01g090700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00018264g0008.1 protein AED:0.20 eAED:0.20 QI:270|0.94|0.95|1|1|1|20|233|773; (*GB) gi|356495893|ref|XP_003516805.1| (e_value=0.0) PREDICTED: elongation factor G, mitochondrial-like [Glycine max];; (*SWP) sp|Q9C641|EFGM_ARATH (e_value=0.0) Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1;; (*TAIR) AT2G45030.1 (e_value=0.0) | Symbols: | Translation elongation factor EFG/EF2 protein | chr2:18572411-18576756 FORWARD LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbS00044937g0005.1 protein AED:0.24 eAED:0.24 QI:73|1|1|1|1|1|7|391|328; (*GB) gi|225424542|ref|XP_002285300.1| (e_value=1e-101) PREDICTED: uncharacterized protein LOC100267955 [Vitis vinifera];; (*TAIR) AT1G09290.1 (e_value=5e-94) | Symbols: | unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:3001682-3003715 REVERSE LENGTH=348;; (*ITAG) Solyc01g020240.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:27975078-27985354 transcript_region:SL2.40ch01:27975078..27985354+ functional_description:"T31J12.1 protein (Fragment) (AHRD V1 ***- Q9ZPZ6_ARATH)"; NbS00058055g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|282; (*GB) gi|359482705|ref|XP_002265218.2| (e_value=1e-88) PREDICTED: uncharacterized protein LOC100247324 [Vitis vinifera];; (*TAIR) AT1G15320.2 (e_value=3e-73) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5272468-5274029 REVERSE LENGTH=289;; (*ITAG) Solyc03g116770.2.1 (e_value=4e-159) genomic_reference:SL2.40ch03 gene_region:60108379-60109601 transcript_region:SL2.40ch03:60108379..60109601+ functional_description:"DNA-binding protein-like protein (AHRD V1 ***- Q9LKB6_ARATH)"; NbS00058055g0005.1 protein AED:0.07 eAED:0.07 QI:260|0.66|0.57|0.85|0.66|0.57|7|0|248; (*GB) gi|225445591|ref|XP_002285400.1| (e_value=3e-86) PREDICTED: uncharacterized protein LOC100250952 isoform 1 [Vitis vinifera];; (*TAIR) AT5G32440.1 (e_value=9e-63) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=264;; (*ITAG) Solyc03g116780.2.1 (e_value=3e-127) genomic_reference:SL2.40ch03 gene_region:60110746-60114311 transcript_region:SL2.40ch03:60110746..60114311+ functional_description:"CUE domain containing protein (AHRD V1 **-- B6TCB4_MAIZE); contains Interpro domain(s) IPR009060 UBA-like "; NbS00058055g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0|1|1|1|3|0|116; (*GB) gi|125541520|gb|EAY87915.1| (e_value=1e-15) hypothetical protein OsI_09337 [Oryza sativa Indica Group];; (*ITAG) Solyc03g116790.2.1 (e_value=3e-24) genomic_reference:SL2.40ch03 gene_region:60114726-60125680 transcript_region:SL2.40ch03:60114726..60125680+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00026645g0002.1 protein AED:0.38 eAED:0.46 QI:0|0|0.33|0.66|1|1|3|152|67 NbS00026645g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|132; (*ITAG) Solyc01g106720.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86233464-86234099 transcript_region:SL2.40ch01:86233464..86234099- go_terms:GO:0017075 functional_description:"MADS-box transcription factor (AHRD V1 *-*- Q6S5H1_NEMVE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00040937g0022.1 protein AED:0.00 eAED:0.00 QI:215|1|1|1|1|1|4|556|204; (*GB) gi|357492627|ref|XP_003616602.1| (e_value=4e-14) hypothetical protein MTR_5g082250 [Medicago truncatula]; NbS00040937g0016.1 protein AED:0.03 eAED:0.03 QI:546|1|1|1|0.75|0.77|9|138|471; (*GB) gi|37651177|dbj|BAC98948.1| (e_value=0.0) AUX1-like auxin influx carrier protein [Pisum sativum];; (*SWP) sp|Q9FEL7|LAX2_MEDTR (e_value=0.0) Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G38120.1 (e_value=0.0) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485;; (*ITAG) Solyc10g076790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59070137-59074683 transcript_region:SL2.40ch10:59070137..59074683- go_terms:GO:0010328,GO:0010011 functional_description:"Auxin transporter-like protein 1 (AHRD V1 **** B6U1Y3_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0010328,GO:0010011 NbS00040937g0018.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|0.5|0.33|3|0|76 NbS00040937g0008.1 protein AED:0.29 eAED:0.30 QI:126|0.45|0.5|1|1|1|12|0|610; (*GB) gi|3348124|gb|AAC27795.1| (e_value=0.0) feedback-insensitive anthranilate synthase alpha-2 chain [Nicotiana tabacum];; (*SWP) sp|P32068|TRPE_ARATH (e_value=0.0) Anthranilate synthase component I-1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=2 SV=1;; (*TAIR) AT5G05730.1 (e_value=0.0) | Symbols: ASA1, TRP5, AMT1, WEI2, JDL1 | anthranilate synthase alpha subunit 1 | chr5:1719740-1722811 REVERSE LENGTH=595;; (*ITAG) Solyc06g005980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:964946-972193 transcript_region:SL2.40ch06:964946..972193- go_terms:GO:0046820,GO:0004049 functional_description:"Anthranilate synthase component I-1 (AHRD V1 **** B4F8P4_MAIZE); contains Interpro domain(s) IPR019999 Anthranilate synthase component I, C-terminal "; GO:0046820,GO:0004049 NbS00040937g0024.1 protein AED:0.34 eAED:0.35 QI:0|0.77|0.6|0.9|0.55|0.6|10|0|403; (*GB) gi|255571887|ref|XP_002526886.1| (e_value=0.0) metalloendopeptidase, putative [Ricinus communis];; (*TAIR) AT5G05740.2 (e_value=0.0) | Symbols: ATEGY2, EGY2 | ethylene-dependent gravitropism-deficient and yellow-green-like 2 | chr5:1724023-1726859 REVERSE LENGTH=527;; (*ITAG) Solyc06g019200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:14497192-14501561 transcript_region:SL2.40ch06:14497192..14501561- go_terms:GO:0006508 functional_description:"Peptidase M50 family protein (AHRD V1 ***- D7LZ04_ARALY); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00049464g0004.1 protein AED:0.05 eAED:0.05 QI:125|1|1|1|0|0|2|538|292; (*GB) gi|147846631|emb|CAN79495.1| (e_value=5e-54) hypothetical protein VITISV_020749 [Vitis vinifera];; (*SWP) sp|Q9M2U1|DOF36_ARATH (e_value=2e-38) Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2;; (*TAIR) AT3G55370.1 (e_value=1e-39) | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527198-20528876 FORWARD LENGTH=323;; (*ITAG) Solyc05g054510.1.1 (e_value=5e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63565358-63566445 transcript_region:SL2.40ch05:63565358..63566445- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00007203g0015.1 protein AED:0.03 eAED:0.05 QI:0|0.33|0|1|0|0|4|0|296; (*GB) gi|224104943|ref|XP_002313627.1| (e_value=5e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FG13|CXE15_ARATH (e_value=6e-86) Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1;; (*TAIR) AT5G06570.2 (e_value=5e-87) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329;; (*ITAG) Solyc11g071720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52207795-52209357 transcript_region:SL2.40ch11:52207795..52209357+ go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOSM); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00007203g0016.1 protein AED:0.11 eAED:0.12 QI:155|0.86|0.82|1|0.86|0.86|23|0|1423; (*GB) gi|296084023|emb|CBI24411.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=9e-110) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G44050.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:15818738-15824792 FORWARD LENGTH=1263;; (*ITAG) Solyc11g071730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52210463-52220734 transcript_region:SL2.40ch11:52210463..52220734+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LXV6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00007203g0011.1 protein AED:0.33 eAED:0.33 QI:0|0.5|1|1|0.5|0.66|3|307|135; (*GB) gi|225436093|ref|XP_002277657.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100244480 [Vitis vinifera];; (*TAIR) AT3G44020.1 (e_value=8e-20) | Symbols: | thylakoid lumenal P17.1 protein | chr3:15801382-15802561 FORWARD LENGTH=159;; (*ITAG) Solyc11g071710.1.1 (e_value=3e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:52204800-52207250 transcript_region:SL2.40ch11:52204800..52207250+ functional_description:"DnaJ-like zinc-finger protein (AHRD V1 **-- A8IXN3_CHLRE)"; NbS00007203g0005.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|12963415|gb|AAK11255.1|AF329729_1 (e_value=9e-85) regulator of gene silencing [Nicotiana tabacum];; (*SWP) sp|Q8RYJ8|CML19_ORYSJ (e_value=9e-38) Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1;; (*TAIR) AT1G76650.3 (e_value=2e-36) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc11g071740.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52221262-52221867 transcript_region:SL2.40ch11:52221262..52221867- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00056068g0004.1 protein AED:0.26 eAED:0.26 QI:261|0.8|1|1|1|1|6|490|189; (*GB) gi|6688926|emb|CAB65313.1| (e_value=2e-77) VAP27 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9SHC8|VAP12_ARATH (e_value=3e-37) Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1;; (*TAIR) AT2G45140.1 (e_value=2e-38) | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611029-18612971 FORWARD LENGTH=239;; (*ITAG) Solyc10g018350.1.1 (e_value=1e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7367508-7373994 transcript_region:SL2.40ch10:7367508..7373994- go_terms:GO:0005515 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005515 NbS00023409g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.81|0.64|0.94|0.87|0.88|17|0|517; (*GB) gi|224069647|ref|XP_002303016.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19340.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3754) | chr3:6701387-6704071 REVERSE LENGTH=487;; (*ITAG) Solyc10g007530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1851352-1852833 transcript_region:SL2.40ch10:1851352..1852833+ functional_description:"Genomic DNA chromosome 3 P1 clone MLD14 (AHRD V1 ***- Q9LT83_ARATH)"; NbS00023409g0018.1 protein AED:0.19 eAED:0.19 QI:1520|0.77|0.7|1|0.77|0.6|10|0|726; (*GB) gi|356502253|ref|XP_003519934.1| (e_value=3e-77) PREDICTED: uncharacterized protein LOC100776137 [Glycine max];; (*TAIR) AT5G13950.3 (e_value=4e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1). | chr5:4496196-4500206 REVERSE LENGTH=954;; (*ITAG) Solyc02g094540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49655327-49659264 transcript_region:SL2.40ch02:49655327..49659264+ functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 *-*- Q9FFY0_ARATH); contains Interpro domain(s) IPR009966 Prosystemin "; NbS00023409g0015.1 protein AED:0.33 eAED:0.33 QI:0|0.83|0.71|1|0.83|0.85|7|0|399; (*GB) gi|225451635|ref|XP_002277073.1| (e_value=1e-173) PREDICTED: nodulation receptor kinase [Vitis vinifera];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=5e-50) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G26700.1 (e_value=8e-156) | Symbols: | Protein kinase superfamily protein | chr3:9810669-9812356 FORWARD LENGTH=380;; (*ITAG) Solyc02g094570.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:49679754-49681584 transcript_region:SL2.40ch02:49679754..49681584- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM36_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023409g0004.1 protein AED:0.46 eAED:0.46 QI:0|1|0.5|1|1|1|2|0|130; (*GB) gi|225451635|ref|XP_002277073.1| (e_value=7e-44) PREDICTED: nodulation receptor kinase [Vitis vinifera];; (*TAIR) AT3G26700.1 (e_value=3e-42) | Symbols: | Protein kinase superfamily protein | chr3:9810669-9812356 FORWARD LENGTH=380;; (*ITAG) Solyc02g094580.2.1 (e_value=2e-56) genomic_reference:SL2.40ch02 gene_region:49698173-49699414 transcript_region:SL2.40ch02:49698173..49699414- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM36_MARPO); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468 NbS00023409g0016.1 protein AED:0.37 eAED:0.49 QI:0|0|0|1|0|0|3|0|96; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-19) hypothetical protein [Nicotiana tabacum]; NbS00023409g0017.1 protein AED:0.42 eAED:0.73 QI:0|0|0|1|0|0|2|0|64 NbS00027365g0007.1 protein AED:0.10 eAED:0.10 QI:150|0.7|0.72|1|0.4|0.45|11|689|443; (*GB) gi|225454148|ref|XP_002273023.1| (e_value=4e-132) PREDICTED: tRNA-specific adenosine deaminase 1 [Vitis vinifera];; (*SWP) sp|P55265|DSRAD_HUMAN (e_value=5e-21) Double-stranded RNA-specific adenosine deaminase OS=Homo sapiens GN=ADAR PE=1 SV=4;; (*TAIR) AT1G01760.1 (e_value=1e-111) | Symbols: | adenosine deaminases;RNA binding;RNA binding;adenosine deaminases | chr1:276412-278448 REVERSE LENGTH=420;; (*ITAG) Solyc05g048810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58644576-58650793 transcript_region:SL2.40ch05:58644576..58650793- go_terms:GO:0008251 functional_description:"tRNA-specific adenosine deaminase (AHRD V1 **** B0WPX1_CULQU); contains Interpro domain(s) IPR002466 Adenosine deaminase/editase "; GO:0008251 NbS00027365g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.16|0|0.85|0.16|0.14|7|0|490; (*GB) gi|359489773|ref|XP_002273091.2| (e_value=0.0) PREDICTED: O-glucosyltransferase rumi-like [Vitis vinifera];; (*SWP) sp|Q7ZVE6|KDEL1_DANRE (e_value=3e-11) KDEL motif-containing protein 1 OS=Danio rerio GN=kdelc1 PE=2 SV=1;; (*TAIR) AT2G45830.1 (e_value=1e-163) | Symbols: DTA2 | downstream target of AGL15 2 | chr2:18866324-18868344 FORWARD LENGTH=523;; (*ITAG) Solyc01g094380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77653952-77658616 transcript_region:SL2.40ch01:77653952..77658616+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00027365g0011.1 protein AED:0.33 eAED:0.37 QI:0|0.2|0|0.83|0.6|0.83|6|0|387; (*GB) gi|255537419|ref|XP_002509776.1| (e_value=4e-105) KDEL motif-containing protein 1 precursor, putative [Ricinus communis];; (*TAIR) AT2G45830.1 (e_value=1e-89) | Symbols: DTA2 | downstream target of AGL15 2 | chr2:18866324-18868344 FORWARD LENGTH=523;; (*ITAG) Solyc01g094380.2.1 (e_value=9e-120) genomic_reference:SL2.40ch01 gene_region:77653952-77658616 transcript_region:SL2.40ch01:77653952..77658616+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8SQN9_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00060742g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|203; (*ITAG) Solyc07g043250.1.1 (e_value=8e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:54233378-54233860 transcript_region:SL2.40ch07:54233378..54233860- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbC25852378g0001.1 protein AED:0.28 eAED:0.35 QI:24|0|0|1|1|1|3|0|179; (*GB) gi|225735301|gb|ACO25616.1| (e_value=1e-42) NBS-coding resistance protein [Nicotiana repanda];; (*ITAG) Solyc08g013970.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3370576-3373318 transcript_region:SL2.40ch08:3370576..3373318+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00000216g0004.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|0.66|0.25|4|0|407; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-35) hypothetical protein [Nicotiana tabacum]; NbS00058986g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|0|0.5|4|0|227; (*GB) gi|225442009|ref|XP_002271802.1| (e_value=5e-73) PREDICTED: GDSL esterase/lipase 1 [Vitis vinifera];; (*SWP) sp|Q9SYF0|GLIP2_ARATH (e_value=7e-57) GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=GLIP2 PE=2 SV=1;; (*TAIR) AT1G53940.1 (e_value=2e-57) | Symbols: GLIP2 | GDSL-motif lipase 2 | chr1:20143279-20145780 FORWARD LENGTH=436;; (*ITAG) Solyc06g065010.2.1 (e_value=3e-112) genomic_reference:SL2.40ch06 gene_region:36927810-36930134 transcript_region:SL2.40ch06:36927810..36930134+ go_terms:GO:0016298 functional_description:"GDSL esterase/lipase 1 (AHRD V1 **** GLIP1_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298 NbS00020361g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|122; (*GB) gi|357158864|ref|XP_003578265.1| (e_value=2e-20) PREDICTED: blue copper protein-like [Brachypodium distachyon];; (*SWP) sp|Q41001|BCP_PEA (e_value=5e-15) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G20570.1 (e_value=2e-17) | Symbols: ENODL9, AtENODL9 | early nodulin-like protein 9 | chr3:7186754-7187453 REVERSE LENGTH=203;; (*ITAG) Solyc07g008420.2.1 (e_value=5e-55) genomic_reference:SL2.40ch07 gene_region:3213591-3215016 transcript_region:SL2.40ch07:3213591..3215016- go_terms:GO:0005515 functional_description:"Blue copper-like protein (AHRD V1 **-- A3F8V0_GOSHI); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0005515 NbS00020361g0002.1 protein AED:0.22 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|140; (*ITAG) Solyc04g053070.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00009833g0008.1 protein AED:0.10 eAED:0.11 QI:164|0.66|0.57|1|0.5|0.42|7|118|854; (*GB) gi|359486312|ref|XP_002275708.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241537 [Vitis vinifera];; (*TAIR) AT3G55060.1 (e_value=8e-174) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). | chr3:20403189-20406222 REVERSE LENGTH=896;; (*ITAG) Solyc05g054930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63872586-63876086 transcript_region:SL2.40ch05:63872586..63876086+ go_terms:GO:0008152 functional_description:"Centromere protein-like (AHRD V1 ***- Q9M2W0_ARATH); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0008152 NbS00009833g0004.1 protein AED:0.20 eAED:0.24 QI:225|0.2|0.5|1|1|1|6|597|199; (*GB) gi|388495254|gb|AFK35693.1| (e_value=8e-15) unknown [Lotus japonicus];; (*SWP) sp|Q9FYB7|RSZ32_ARATH (e_value=3e-14) Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1;; (*TAIR) AT3G53500.1 (e_value=9e-16) | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:19834557-19835896 REVERSE LENGTH=243;; (*ITAG) Solyc05g054920.2.1 (e_value=5e-30) genomic_reference:SL2.40ch05 gene_region:63862674-63866926 transcript_region:SL2.40ch05:63862674..63866926+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 6 (AHRD V1 *--- B6T453_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0008270,GO:0000166 NbS00003713g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|147778296|emb|CAN60816.1| (e_value=2e-47) hypothetical protein VITISV_033219 [Vitis vinifera];; (*SWP) sp|Q3E902|RS212_ARATH (e_value=2e-43) 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=2;; (*TAIR) AT5G27700.1 (e_value=2e-44) | Symbols: | Ribosomal protein S21e | chr5:9807541-9808048 REVERSE LENGTH=82;; (*ITAG) Solyc04g074900.2.1 (e_value=5e-55) genomic_reference:SL2.40ch04 gene_region:58410476-58411839 transcript_region:SL2.40ch04:58410476..58411839- go_terms:GO:0003735 functional_description:"40S ribosomal protein S21 (AHRD V1 ***- D7M5J1_ARALY); contains Interpro domain(s) IPR001931 Ribosomal protein S21e "; GO:0003735 NbS00003713g0006.1 protein AED:0.20 eAED:0.23 QI:0|0.5|0.33|1|0|0.33|3|277|54 NbS00003713g0101.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|212 NbS00003713g0107.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.33|0|0.33|3|0|88 NbS00003713g0106.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|75 NbS00015793g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|123; (*GB) gi|296081801|emb|CBI20806.3| (e_value=5e-14) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G24370.1 (e_value=2e-14) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc08g069190.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55443350-55443628 transcript_region:SL2.40ch08:55443350..55443628- go_terms:GO:0006950 functional_description:"Protein kinase family protein (AHRD V1 ***- Q1PF03_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00008831g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|347; (*GB) gi|298204500|emb|CBI23775.3| (e_value=1e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q24133|DNAJ1_DROME (e_value=1e-48) DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3;; (*TAIR) AT1G11040.1 (e_value=5e-69) | Symbols: | HSP40/DnaJ peptide-binding protein | chr1:3679225-3680924 REVERSE LENGTH=438;; (*ITAG) Solyc11g044450.1.1 (e_value=2e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35690897-35692249 transcript_region:SL2.40ch11:35690897..35692249+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 *-*- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00008831g0006.1 protein AED:0.33 eAED:0.33 QI:88|1|1|1|1|1|2|347|93; (*GB) gi|225464081|ref|XP_002270515.1| (e_value=2e-35) PREDICTED: costars family protein [Vitis vinifera];; (*SWP) sp|Q6AVK1|COSA_ORYSJ (e_value=9e-34) Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1;; (*TAIR) AT4G33640.1 (e_value=6e-33) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159727-16160211 REVERSE LENGTH=95;; (*ITAG) Solyc11g044230.1.1 (e_value=6e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:35165332-35168495 transcript_region:SL2.40ch11:35165332..35168495+ functional_description:"UPF0727 protein C6orf115 homolog (AHRD V1 *-*- CF115_XENLA)"; NbS00017361g0009.1 protein AED:0.18 eAED:0.18 QI:280|1|1|1|0.90|0.83|12|349|765; (*GB) gi|8439545|gb|AAF74983.1|AF082893_1 (e_value=0.0) methionine synthase [Solanum tuberosum];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00017361g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|144; (*ITAG) Solyc10g047880.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025190g0006.1 protein AED:0.41 eAED:0.67 QI:0|1|0|1|1|0.5|2|0|75; (*ITAG) Solyc07g040720.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:46775853-46782305 transcript_region:SL2.40ch07:46775853..46782305+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00025190g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.71|1|0.66|0.85|7|0|681; (*GB) gi|225455320|ref|XP_002271917.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera];; (*SWP) sp|Q6LA54|YF48_SCHPO (e_value=6e-50) Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2;; (*TAIR) AT5G24320.1 (e_value=7e-180) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc06g052070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32211735-32215023 transcript_region:SL2.40ch06:32211735..32215023- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7MSZ0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00001367g0012.1 protein AED:0.16 eAED:0.17 QI:0|0.75|0.30|1|0.41|0.46|13|0|2341; (*GB) gi|359472760|ref|XP_003631193.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera];; (*SWP) sp|Q8TDI0|CHD5_HUMAN (e_value=6e-171) Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1;; (*TAIR) AT5G44800.1 (e_value=0.0) | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr5:18083659-18092162 REVERSE LENGTH=2223;; (*ITAG) Solyc02g068560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33090650-33105873 transcript_region:SL2.40ch02:33090650..33105873- go_terms:GO:0005634,GO:0005524,GO:0008270,GO:0045449 functional_description:"Chromodomain helicase DNA binding protein 5 (AHRD V1 *--- A2A8L1_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005634,GO:0005524,GO:0008270,GO:0045449 NbS00047464g0005.1 protein AED:0.25 eAED:0.25 QI:452|0.75|0.77|1|0.62|0.66|9|0|351; (*GB) gi|356575154|ref|XP_003555707.1| (e_value=1e-172) PREDICTED: serine/threonine-protein kinase SRK2E-like isoform 1 [Glycine max];; (*SWP) sp|Q940H6|SRK2E_ARATH (e_value=6e-166) Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1;; (*TAIR) AT4G33950.1 (e_value=5e-167) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 | Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362;; (*ITAG) Solyc01g108280.2.1 (e_value=6e-173) genomic_reference:SL2.40ch01 gene_region:87392164-87396307 transcript_region:SL2.40ch01:87392164..87396307- go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00008764g0014.1 protein AED:0.14 eAED:0.14 QI:341|1|1|1|1|1|6|233|276; (*GB) gi|161788872|dbj|BAF95070.1| (e_value=0.0) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42055|VDAC1_SOLTU (e_value=5e-179) Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=2e-148) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc03g058920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24224821-24228703 transcript_region:SL2.40ch03:24224821..24228703+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00008764g0021.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.5|4|0|514; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=1e-173) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=3e-175) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT5G63180.1 (e_value=1e-112) | Symbols: | Pectin lyase-like superfamily protein | chr5:25341106-25343113 REVERSE LENGTH=432;; (*ITAG) Solyc02g087670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00008764g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|311; (*GB) gi|730291|sp|P40972.1|PEL_TOBAC (e_value=2e-103) RecName: Full=Pectate lyase; Flags: Precursor;; (*SWP) sp|P40972|PLY_TOBAC (e_value=5e-105) Pectate lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=2e-55) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc06g071840.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40644913-40648380 transcript_region:SL2.40ch06:40644913..40648380+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00008764g0022.1 protein AED:0.14 eAED:0.14 QI:72|1|1|1|0.6|0.66|6|317|286; (*GB) gi|255558218|ref|XP_002520136.1| (e_value=0.0) Protein PPLZ12, putative [Ricinus communis];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=0.0) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=0.0) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00007319g0013.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|527; (*GB) gi|37223500|gb|AAQ90287.1| (e_value=0.0) beta-1,3-glucanase, acidic [Coffea arabica];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT1G64760.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24054220-24056194 REVERSE LENGTH=481;; (*ITAG) Solyc12g019890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:12107524-12110521 transcript_region:SL2.40ch12:12107524..12110521- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00007319g0012.1 protein AED:0.07 eAED:0.09 QI:0|0.62|0.44|0.77|0.5|0.55|9|0|1126; (*GB) gi|359496484|ref|XP_002265872.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q8WTW3|COG1_HUMAN (e_value=9e-44) Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1;; (*TAIR) AT5G16300.1 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr5:5338119-5342186 FORWARD LENGTH=1068;; (*ITAG) Solyc03g120700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63049230-63059597 transcript_region:SL2.40ch03:63049230..63059597+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 1 (AHRD V1 **-- COG1_MOUSE); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0005515 NbS00031397g0011.1 protein AED:0.23 eAED:0.23 QI:203|1|1|1|1|1|6|45|285; (*GB) gi|255571843|ref|XP_002526864.1| (e_value=1e-150) eukaryotic translation initiation factor 3f, eif3f, putative [Ricinus communis];; (*SWP) sp|O04202|EIF3F_ARATH (e_value=2e-139) Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1;; (*TAIR) AT2G39990.1 (e_value=2e-140) | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293;; (*ITAG) Solyc11g013440.1.1 (e_value=4e-178) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6453735-6462143 transcript_region:SL2.40ch11:6453735..6462143+ functional_description:"Eukaryotic translation initiation factor 3 subunit 5 (AHRD V1 ***- B4FRD9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00031397g0012.1 protein AED:0.24 eAED:0.26 QI:45|0.66|0.5|1|1|1|4|263|78; (*GB) gi|307136208|gb|ADN34046.1| (e_value=3e-33) SNF5-like protein BSH [Cucumis melo subsp. melo];; (*SWP) sp|P93045|BSH_ARATH (e_value=3e-27) Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2;; (*TAIR) AT3G17590.1 (e_value=2e-28) | Symbols: BSH, CHE1 | transcription regulatory protein SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=240;; (*ITAG) Solyc11g013400.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6409216-6419516 transcript_region:SL2.40ch11:6409216..6419516+ go_terms:GO:0000228 functional_description:"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (AHRD V1 ***- B6T3Y4_MAIZE); contains Interpro domain(s) IPR006939 SNF5/SMARCB1/INI1 "; GO:0000228 NbS00031397g0010.1 protein AED:0.25 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|212; (*GB) gi|225459556|ref|XP_002285854.1| (e_value=6e-62) PREDICTED: uncharacterized protein LOC100260772 [Vitis vinifera];; (*TAIR) AT1G21830.1 (e_value=1e-33) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7661429-7662521 REVERSE LENGTH=206;; (*ITAG) Solyc11g013450.1.1 (e_value=2e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6470193-6472721 transcript_region:SL2.40ch11:6470193..6472721+ functional_description:"CAA30371.1 protein (Fragment) (AHRD V1 ***- Q9ST96_ORYSA)"; NbS00031397g0017.1 protein AED:0.38 eAED:0.42 QI:29|0.75|0.4|1|0.5|0.2|5|0|125; (*GB) gi|225432226|ref|XP_002270283.1| (e_value=3e-65) PREDICTED: chromatin structure-remodeling complex protein BSH [Vitis vinifera];; (*SWP) sp|P93045|BSH_ARATH (e_value=6e-63) Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2;; (*TAIR) AT3G17590.1 (e_value=4e-64) | Symbols: BSH, CHE1 | transcription regulatory protein SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=240;; (*ITAG) Solyc11g013400.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6409216-6419516 transcript_region:SL2.40ch11:6409216..6419516+ go_terms:GO:0000228 functional_description:"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (AHRD V1 ***- B6T3Y4_MAIZE); contains Interpro domain(s) IPR006939 SNF5/SMARCB1/INI1 "; GO:0000228 NbS00023030g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|0.5|0.66|3|0|336; (*GB) gi|255555559|ref|XP_002518816.1| (e_value=0.0) gibberellin 20-oxidase, putative [Ricinus communis];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=8e-122) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.1 (e_value=6e-123) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11306601 FORWARD LENGTH=338;; (*ITAG) Solyc04g008670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2314687-2317056 transcript_region:SL2.40ch04:2314687..2317056+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **** B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00044071g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|69; (*GB) gi|224138054|ref|XP_002322718.1| (e_value=8e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57450.1 (e_value=1e-16) | Symbols: | unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21262028-21262318 FORWARD LENGTH=96;; (*ITAG) Solyc01g087580.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:74289243-74289618 transcript_region:SL2.40ch01:74289243..74289618- functional_description:"Unknown Protein (AHRD V1)"; NbS00029924g0004.1 protein AED:0.26 eAED:0.26 QI:219|1|1|1|0.5|0.28|7|449|308; (*GB) gi|350535985|ref|NP_001233968.1| (e_value=2e-177) ASC1-like protein [Solanum lycopersicum];; (*SWP) sp|Q8W4Y5|ASCL_SOLLC (e_value=4e-179) ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G13580.3 (e_value=3e-161) | Symbols: LAG13 | LAG1 longevity assurance homolog 3 | chr1:4645006-4646765 REVERSE LENGTH=308;; (*ITAG) Solyc05g010280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4442298-4449047 transcript_region:SL2.40ch05:4442298..4449047+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 6 (AHRD V1 **-- C1C120_9MAXI); contains Interpro domain(s) IPR016439 Longevity assurance, LAG1/LAC1 "; GO:0050291 NbS00029924g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|113; (*ITAG) Solyc06g011460.1.1 (e_value=7e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00058786g0003.1 protein AED:0.03 eAED:0.03 QI:5|0.8|0.66|1|1|1|6|0|220; (*GB) gi|356525612|ref|XP_003531418.1| (e_value=8e-87) PREDICTED: protein N-terminal asparagine amidohydrolase-like [Glycine max];; (*TAIR) AT2G44420.1 (e_value=1e-69) | Symbols: | protein N-terminal asparagine amidohydrolase family protein | chr2:18330568-18332696 FORWARD LENGTH=347;; (*ITAG) Solyc01g073930.2.1 (e_value=7e-124) genomic_reference:SL2.40ch01 gene_region:70515874-70522211 transcript_region:SL2.40ch01:70515874..70522211+ go_terms:GO:0008418 functional_description:"N-terminal asparagine amidohydrolase family protein (AHRD V1 **** D7LLL3_ARALY)"; GO:0008418 NbS00000884g0011.1 protein AED:0.32 eAED:0.32 QI:206|0.8|0.66|1|0.4|0.5|6|0|313; (*GB) gi|2500521|sp|Q40468.1|IF415_TOBAC (e_value=1e-151) RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15; AltName: Full=ATP-dependent RNA helicase eIF4A-15;; (*SWP) sp|Q40468|IF415_TOBAC (e_value=3e-153) Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G54270.1 (e_value=3e-140) | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412;; (*ITAG) Solyc12g095990.1.1 (e_value=3e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63417253-63419388 transcript_region:SL2.40ch12:63417253..63419388- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00000884g0008.1 protein AED:0.20 eAED:0.20 QI:222|0.93|0.88|1|0.75|0.76|17|411|516; (*GB) gi|121501708|gb|ABM55249.1| (e_value=0.0) casein kinase [Beta vulgaris];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=0.0) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc05g016410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:16183759-16196457 transcript_region:SL2.40ch05:16183759..16196457+ go_terms:GO:0006468 functional_description:"Casein kinase (AHRD V1 ***- A2I5G0_BETVU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011031g0002.1 protein AED:0.14 eAED:0.14 QI:236|1|1|1|0.75|0.6|5|154|377; (*GB) gi|231503|sp|P30171.1|ACT11_SOLTU (e_value=0.0) RecName: Full=Actin-97;; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00011031g0007.1 protein AED:0.24 eAED:0.24 QI:143|1|1|1|0.87|0.77|9|710|254; (*GB) gi|77745458|gb|ABB02628.1| (e_value=2e-161) triose phosphate isomerase cytosolic isoform-like [Solanum tuberosum];; (*SWP) sp|P48495|TPIS_PETHY (e_value=1e-161) Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1;; (*TAIR) AT3G55440.1 (e_value=5e-151) | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254;; (*ITAG) Solyc04g011510.2.1 (e_value=3e-152) genomic_reference:SL2.40ch04 gene_region:3944572-3949105 transcript_region:SL2.40ch04:3944572..3949105+ go_terms:GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** Q38JI4_SOLTU); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0004807 NbS00000719g0015.1 protein AED:0.10 eAED:0.10 QI:1496|0.8|0.85|1|0.6|0.61|21|458|471; (*GB) gi|297746163|emb|CBI16219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-34) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc11g072820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53093963-53100080 transcript_region:SL2.40ch11:53093963..53100080- go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00000719g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0.85|1|0.76|0.85|14|0|780; (*GB) gi|109631188|gb|ABG35770.1| (e_value=0.0) NOX1 [Striga asiatica];; (*SWP) sp|Q9FJD6|RBOHH_ARATH (e_value=0.0) Putative respiratory burst oxidase homolog protein H OS=Arabidopsis thaliana GN=RBOHH PE=3 SV=1;; (*TAIR) AT5G60010.1 (e_value=0.0) | Symbols: | ferric reductase-like transmembrane component family protein | chr5:24160456-24164755 FORWARD LENGTH=886;; (*ITAG) Solyc11g072800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53080287-53084638 transcript_region:SL2.40ch11:53080287..53084638- go_terms:GO:0016020,GO:0016021,GO:0005509,GO:0055114 functional_description:"NADPH oxidase (AHRD V1 ***- Q8W4X7_TOBAC); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016020,GO:0016021,GO:0005509,GO:0055114 NbS00000719g0002.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|1|1|2|0|1327; (*GB) gi|225435142|ref|XP_002284629.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250176 [Vitis vinifera];; (*SWP) sp|Q6P4L9|NFRKB_XENTR (e_value=2e-36) Nuclear factor related to kappa-B-binding protein OS=Xenopus tropicalis GN=nfrkb PE=2 SV=1;; (*TAIR) AT3G45830.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). | chr3:16841277-16845173 FORWARD LENGTH=1298;; (*ITAG) Solyc11g072810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53088553-53092554 transcript_region:SL2.40ch11:53088553..53092554+ functional_description:"Nuclear factor related to kappa-B-binding protein related (AHRD V1 ***- Q2HU34_MEDTR)"; NbS00000719g0007.1 protein AED:0.59 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|85 NbS00022161g0004.1 protein AED:0.29 eAED:0.46 QI:255|1|0.66|1|0.8|0.66|6|0|400; (*GB) gi|225450115|ref|XP_002278849.1| (e_value=2e-50) PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera];; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=2e-22) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1;; (*TAIR) AT5G12840.4 (e_value=2e-23) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=271;; (*ITAG) Solyc01g087240.2.1 (e_value=3e-131) genomic_reference:SL2.40ch01 gene_region:73938193-73944527 transcript_region:SL2.40ch01:73938193..73944527+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-** B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700 NbS00047193g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|0.5|1|1|2|0|99; (*ITAG) Solyc09g066200.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60236244-60236555 transcript_region:SL2.40ch09:60236244..60236555- functional_description:"Unknown Protein (AHRD V1)"; NbS00047193g0009.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0.33|1|0.5|0.66|3|178|434; (*GB) gi|225437824|ref|XP_002263239.1| (e_value=3e-180) PREDICTED: F-box/kelch-repeat protein OR23-like [Vitis vinifera];; (*SWP) sp|Q0V7S6|FK125_ARATH (e_value=4e-155) F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1;; (*TAIR) AT4G03030.1 (e_value=3e-156) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:1335942-1337270 REVERSE LENGTH=442;; (*ITAG) Solyc09g066210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60238525-60243325 transcript_region:SL2.40ch09:60238525..60243325- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7M3A7_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00049065g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|1|1|2|1653|203; (*GB) gi|255554254|ref|XP_002518167.1| (e_value=3e-91) Hydroxyethylthiazole kinase, putative [Ricinus communis];; (*SWP) sp|A6VG82|THIM_METM7 (e_value=3e-40) Hydroxyethylthiazole kinase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=thiM PE=3 SV=1;; (*TAIR) AT3G24030.1 (e_value=9e-85) | Symbols: | hydroxyethylthiazole kinase family protein | chr3:8679862-8680812 REVERSE LENGTH=276;; (*ITAG) Solyc05g053480.2.1 (e_value=4e-124) genomic_reference:SL2.40ch05 gene_region:62712711-62714953 transcript_region:SL2.40ch05:62712711..62714953- go_terms:GO:0008972 functional_description:"Hydroxyethylthiazole kinase family protein (AHRD V1 **** D7L4A5_ARALY); contains Interpro domain(s) IPR011144 Hydroxyethylthiazole kinase, monofunctional "; GO:0008972 NbS00049065g0003.1 protein AED:0.16 eAED:0.17 QI:113|0.78|0.85|1|1|1|20|308|620; (*GB) gi|255554262|ref|XP_002518171.1| (e_value=0.0) chaperonin-60kD, ch60, putative [Ricinus communis];; (*SWP) sp|P29197|CH60A_ARATH (e_value=0.0) Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2;; (*TAIR) AT3G23990.1 (e_value=0.0) | Symbols: HSP60, HSP60-3B | heat shock protein 60 | chr3:8669013-8672278 FORWARD LENGTH=577;; (*ITAG) Solyc05g053470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62706122-62712174 transcript_region:SL2.40ch05:62706122..62712174+ go_terms:GO:0005524,GO:0005507 functional_description:"chaperonin (AHRD V1 ***- D2LE93_RHOVA); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0005524,GO:0005507 NbS00049065g0010.1 protein AED:0.64 eAED:0.67 QI:0|0|0|0.66|0|0.33|3|0|211; (*GB) gi|125584887|gb|EAZ25551.1| (e_value=7e-27) hypothetical protein OsJ_09378 [Oryza sativa Japonica Group];; (*TAIR) AT4G13580.1 (e_value=3e-23) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr4:7900427-7901161 FORWARD LENGTH=244;; (*ITAG) Solyc12g097090.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64071732-64073176 transcript_region:SL2.40ch12:64071732..64073176+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q0WPQ6_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00019404g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|0.6|0.75|0.6|5|0|186; (*GB) gi|356533797|ref|XP_003535445.1| (e_value=3e-52) PREDICTED: actin-related protein 9-like [Glycine max];; (*SWP) sp|A2XQX0|ARP9_ORYSI (e_value=6e-38) Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2;; (*TAIR) AT5G43500.2 (e_value=9e-38) | Symbols: ATARP9, ARP9 | actin-related protein 9 | chr5:17469991-17473429 FORWARD LENGTH=584;; (*ITAG) Solyc09g089660.2.1 (e_value=4e-78) genomic_reference:SL2.40ch09 gene_region:64770679-64782089 transcript_region:SL2.40ch09:64770679..64782089- go_terms:GO:0005515 functional_description:"Actin-related protein 8 (AHRD V1 ***- B5X2S3_SALSA); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbS00019404g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|96; (*GB) gi|255576846|ref|XP_002529309.1| (e_value=4e-37) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LSW2|ARP9_ARATH (e_value=7e-31) Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1;; (*TAIR) AT5G43500.2 (e_value=5e-32) | Symbols: ATARP9, ARP9 | actin-related protein 9 | chr5:17469991-17473429 FORWARD LENGTH=584;; (*ITAG) Solyc09g089660.2.1 (e_value=2e-48) genomic_reference:SL2.40ch09 gene_region:64770679-64782089 transcript_region:SL2.40ch09:64770679..64782089- go_terms:GO:0005515 functional_description:"Actin-related protein 8 (AHRD V1 ***- B5X2S3_SALSA); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbC25599194g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|255647289|gb|ACU24111.1| (e_value=1e-98) unknown [Glycine max];; (*TAIR) AT2G39430.1 (e_value=6e-89) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbC25717912g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|356496364|ref|XP_003517038.1| (e_value=9e-95) PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=1e-94) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=1e-95) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc05g050990.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60347337-60348644 transcript_region:SL2.40ch05:60347337..60348644+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7M5S7_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00039609g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|70; (*ITAG) Solyc01g096060.2.1 (e_value=9e-17) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00013856g0016.1 protein AED:0.13 eAED:0.14 QI:0|0.64|0.5|1|0.44|0.42|26|324|1349; (*GB) gi|359475278|ref|XP_003631632.1| (e_value=0.0) PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=0.0) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=0.0) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043130.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:34865935-34882372 transcript_region:SL2.40ch11:34865935..34882372- go_terms:GO:0048015 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 ***- D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0048015 NbS00013856g0015.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|0.75|1|1|4|0|126; (*GB) gi|255557447|ref|XP_002519754.1| (e_value=1e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29520.1 (e_value=2e-43) | Symbols: | AWPM-19-like family protein | chr1:10323735-10324525 FORWARD LENGTH=158;; (*ITAG) Solyc02g071310.2.1 (e_value=8e-49) genomic_reference:SL2.40ch02 gene_region:35368618-35369907 transcript_region:SL2.40ch02:35368618..35369907+ functional_description:"Plasma membrane associated protein (AHRD V1 ***- B4FLA8_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00005645g0005.1 protein AED:0.00 eAED:0.00 QI:837|1|1|1|0|0.5|2|1153|216; (*GB) gi|225458735|ref|XP_002283096.1| (e_value=2e-50) PREDICTED: putative receptor protein kinase ZmPK1-like [Vitis vinifera];; (*SWP) sp|P17801|KPRO_MAIZE (e_value=6e-25) Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2;; (*ITAG) Solyc04g078410.2.1 (e_value=4e-122) genomic_reference:SL2.40ch04 gene_region:60747473-60750378 transcript_region:SL2.40ch04:60747473..60750378+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor protein kinase-like (AHRD V1 **** Q5QLM8_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00006756g0025.1 protein AED:0.10 eAED:0.10 QI:75|0.66|0.5|1|1|1|4|763|251; (*GB) gi|225441401|ref|XP_002275225.1| (e_value=2e-65) PREDICTED: coiled-coil domain-containing protein 75 [Vitis vinifera];; (*TAIR) AT3G57910.1 (e_value=3e-54) | Symbols: | D111/G-patch domain-containing protein | chr3:21442771-21443968 FORWARD LENGTH=265;; (*ITAG) Solyc11g065380.1.1 (e_value=3e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47902199-47906481 transcript_region:SL2.40ch11:47902199..47906481- go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 75 (AHRD V1 ***- B9EQ35_SALSA); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005515 NbS00006756g0001.1 protein AED:0.12 eAED:0.12 QI:99|0.75|0.44|1|1|1|9|0|523; (*GB) gi|297739857|emb|CBI30039.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG23|CK5P3_ARATH (e_value=0.0) CDK5RAP3-like protein OS=Arabidopsis thaliana GN=At5g06830 PE=2 SV=2;; (*TAIR) AT5G06830.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr5:2116882-2119559 REVERSE LENGTH=549;; (*ITAG) Solyc03g059030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24663400-24671909 transcript_region:SL2.40ch03:24663400..24671909- go_terms:GO:0042808 functional_description:"CDK5 regulatory subunit associated protein 3 (AHRD V1 ***- Q6IQA6_DANRE); contains Interpro domain(s) IPR008491 Protein of unknown function DUF773 "; GO:0042808 NbS00006756g0023.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|0.5|0.66|0.75|4|298|366; (*GB) gi|297739854|emb|CBI30036.3| (e_value=4e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|A3C057|SPL17_ORYSJ (e_value=8e-28) Squamosa promoter-binding-like protein 17 OS=Oryza sativa subsp. japonica GN=SPL17 PE=2 SV=2;; (*TAIR) AT2G42200.1 (e_value=8e-28) | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375;; (*ITAG) Solyc10g078700.1.1 (e_value=4e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59754038-59758728 transcript_region:SL2.40ch10:59754038..59758728- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B1_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00006756g0022.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.64|0.88|0.56|0.64|17|0|700; (*GB) gi|297739856|emb|CBI30038.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG24|SRF2_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1;; (*TAIR) AT5G06820.1 (e_value=0.0) | Symbols: SRF2 | STRUBBELIG-receptor family 2 | chr5:2112994-2116663 FORWARD LENGTH=735;; (*ITAG) Solyc03g059020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:24658763-24662836 transcript_region:SL2.40ch03:24658763..24662836+ go_terms:GO:0004702 functional_description:"Receptor like kinase, RLK"; GO:0004702 NbS00006756g0014.1 protein AED:0.34 eAED:0.47 QI:0|0|0|1|1|1|2|0|127; (*ITAG) Solyc03g071760.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00006756g0015.1 protein AED:0.54 eAED:0.82 QI:0|0|0|0.66|1|1|3|0|301; (*GB) gi|113205171|gb|AAT40519.2| (e_value=7e-15) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc10g012440.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:5209998-5210303 transcript_region:SL2.40ch10:5209998..5210303- functional_description:"Unknown Protein (AHRD V1)"; NbS00059987g0003.1 protein AED:0.15 eAED:0.14 QI:722|0.91|0.84|1|1|1|13|0|941; (*GB) gi|359479228|ref|XP_002274007.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase Nek5-like [Vitis vinifera];; (*SWP) sp|Q0WPH8|NEK5_ARATH (e_value=0.0) Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana GN=NEK5 PE=1 SV=1;; (*TAIR) AT3G44200.1 (e_value=0.0) | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis, gene A)-related 6 | chr3:15906788-15911365 FORWARD LENGTH=956;; (*ITAG) Solyc01g009300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3337312-3344788 transcript_region:SL2.40ch01:3337312..3344788- go_terms:GO:0005515,GO:0016301 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00027376g0022.1 protein AED:0.05 eAED:0.05 QI:1526|1|1|1|0.8|0.66|6|881|209; (*GB) gi|224141357|ref|XP_002324039.1| (e_value=6e-84) f-box family protein [Populus trichocarpa];; (*ITAG) Solyc02g087730.2.1 (e_value=2e-89) genomic_reference:SL2.40ch02 gene_region:44619445-44628288 transcript_region:SL2.40ch02:44619445..44628288+ functional_description:"Katanin p80 WD40-containing subunit B1 (AHRD V1 *--- KTNB1_XENTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00027376g0021.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.66|0.5|4|0|424; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=0.0) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=8e-155) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc02g087670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00027376g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|676; (*GB) gi|225452708|ref|XP_002277137.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249048 [Vitis vinifera];; (*TAIR) AT3G28720.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). | chr3:10782276-10784339 FORWARD LENGTH=687;; (*ITAG) Solyc02g087720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44615392-44617428 transcript_region:SL2.40ch02:44615392..44617428- go_terms:GO:0032259 functional_description:"At3g28720-like protein (Fragment) (AHRD V1 *-*- C4PEW7_9SOLN)"; GO:0032259 NbS00027376g0018.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.5|1|1|1|6|0|292; (*GB) gi|350535749|ref|NP_001234211.1| (e_value=8e-99) auxin efflux facilitator SlPIN8 [Solanum lycopersicum];; (*SWP) sp|Q9LFP6|PIN5_ARATH (e_value=7e-71) Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=2 SV=1;; (*TAIR) AT5G15100.1 (e_value=5e-72) | Symbols: PIN8, ATPIN8 | Auxin efflux carrier family protein | chr5:4892159-4893937 REVERSE LENGTH=367;; (*ITAG) Solyc02g087660.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:44595914-44598420 transcript_region:SL2.40ch02:44595914..44598420- go_terms:GO:0009672 functional_description:"Auxin efflux carrier protein (AHRD V1 **** Q5FV66_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00027376g0002.1 protein AED:0.28 eAED:0.34 QI:0|0.07|0|0.92|1|1|14|0|564; (*GB) gi|255552860|ref|XP_002517473.1| (e_value=0.0) structure-specific recognition protein, putative [Ricinus communis];; (*SWP) sp|Q39601|SSRP1_CATRO (e_value=0.0) FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1;; (*TAIR) AT3G28730.1 (e_value=0.0) | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group | chr3:10784954-10788498 FORWARD LENGTH=646;; (*ITAG) Solyc02g087710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44607055-44613931 transcript_region:SL2.40ch02:44607055..44613931- go_terms:GO:0042393 functional_description:"FACT complex subunit SSRP1 (AHRD V1 **-- C0HB78_SALSA); contains Interpro domain(s) IPR000969 Structure-specific recognition protein "; GO:0042393 NbS00043138g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|0|0|2|0|265; (*GB) gi|225457050|ref|XP_002279713.1| (e_value=3e-56) PREDICTED: CASP-like protein At2g36330 [Vitis vinifera];; (*SWP) sp|Q84WP5|CSPL8_ARATH (e_value=2e-39) CASP-like protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1;; (*TAIR) AT2G36330.1 (e_value=2e-40) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283;; (*ITAG) Solyc03g114290.2.1 (e_value=6e-96) genomic_reference:SL2.40ch03 gene_region:58358468-58361072 transcript_region:SL2.40ch03:58358468..58361072+ functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00043138g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.77|0.88|0.87|1|9|676|342; (*GB) gi|255540693|ref|XP_002511411.1| (e_value=1e-169) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GYT9|SIS3_ARATH (e_value=1e-138) E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2;; (*TAIR) AT3G47990.1 (e_value=9e-140) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358;; (*ITAG) Solyc03g114280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58350870-58356906 transcript_region:SL2.40ch03:58350870..58356906+ go_terms:GO:0004842 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00020525g0006.1 protein AED:0.11 eAED:0.11 QI:10|0.66|0.42|1|0.83|0.85|7|0|383; (*GB) gi|147867007|emb|CAN80518.1| (e_value=2e-79) hypothetical protein VITISV_009170 [Vitis vinifera];; (*TAIR) AT4G15050.1 (e_value=1e-64) | Symbols: | Protein of Unknown Function (DUF239) | chr4:8588548-8590345 REVERSE LENGTH=396;; (*ITAG) Solyc08g080700.1.1 (e_value=4e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61090516-61093684 transcript_region:SL2.40ch08:61090516..61093684- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase-like (AHRD V1 ***- Q6ZAJ4_ORYSJ); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00000245g0003.1 protein AED:0.01 eAED:0.01 QI:316|1|0.66|1|0|0|3|789|569; (*GB) gi|225447141|ref|XP_002271314.1| (e_value=0.0) PREDICTED: vacuolar protein 8 [Vitis vinifera];; (*TAIR) AT2G05810.2 (e_value=5e-178) | Symbols: | ARM repeat superfamily protein | chr2:2215225-2216967 REVERSE LENGTH=580;; (*ITAG) Solyc07g049390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56986780-56988489 transcript_region:SL2.40ch07:56986780..56988489- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L9A0_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00029011g0108.1 protein AED:0.56 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|115 NbS00029011g0110.1 protein AED:0.00 eAED:0.00 QI:184|1|1|1|0|0.5|2|198|70 NbS00029011g0101.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|111 NbS00029011g0111.1 protein AED:0.20 eAED:0.28 QI:0|0.33|0.28|1|0|0|7|0|329 NbS00056603g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.5|1|1|1|4|0|363; (*GB) gi|340501186|gb|EGR27996.1| (e_value=0.0) hypothetical protein IMG5_185210 [Ichthyophthirius multifiliis];; (*SWP) sp|P30157|TBB6_ECTVR (e_value=0.0) Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1;; (*TAIR) AT1G75780.1 (e_value=1e-149) | Symbols: TUB1 | tubulin beta-1 chain | chr1:28451378-28453602 REVERSE LENGTH=447;; (*ITAG) Solyc04g081490.2.1 (e_value=5e-156) genomic_reference:SL2.40ch04 gene_region:63035466-63038329 transcript_region:SL2.40ch04:63035466..63038329- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- D7KT68_ARALY); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00056603g0009.1 protein AED:0.30 eAED:0.30 QI:50|0.91|0.76|1|0.75|0.76|13|0|382; (*GB) gi|225457961|ref|XP_002275256.1| (e_value=0.0) PREDICTED: BRCA1-A complex subunit BRE [Vitis vinifera];; (*SWP) sp|Q6DJ78|BRE_XENTR (e_value=2e-27) BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1;; (*TAIR) AT5G42470.1 (e_value=5e-155) | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16982365-16984738 FORWARD LENGTH=382;; (*ITAG) Solyc04g081500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63039981-63045663 transcript_region:SL2.40ch04:63039981..63045663- go_terms:GO:0031593,GO:0005164 functional_description:"BRCA1-A complex subunit BRE (AHRD V1 ***- BRE_XENTR); contains Interpro domain(s) IPR010358 Brain and reproductive organ-expressed "; GO:0031593,GO:0005164 NbS00056603g0003.1 protein AED:0.14 eAED:0.16 QI:261|0.66|0.75|1|0|0.75|4|0|285; (*GB) gi|255538948|ref|XP_002510539.1| (e_value=2e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g081480.1.1 (e_value=2e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:63032063-63035236 transcript_region:SL2.40ch04:63032063..63035236+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003077g0010.1 protein AED:0.05 eAED:0.05 QI:28|1|1|1|1|1|3|189|257; (*GB) gi|40217876|gb|AAR82849.1| (e_value=2e-173) expansin-1 [Petunia x hybrida];; (*SWP) sp|O48818|EXPA4_ARATH (e_value=2e-153) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=1e-154) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g076220.2.1 (e_value=3e-170) genomic_reference:SL2.40ch06 gene_region:43750501-43752531 transcript_region:SL2.40ch06:43750501..43752531- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00003077g0009.1 protein AED:0.09 eAED:0.10 QI:6|1|0.83|1|1|0.83|6|254|710; (*GB) gi|297746065|emb|CBI16121.3| (e_value=1e-170) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13790.1 (e_value=3e-130) | Symbols: | XH/XS domain-containing protein | chr1:4727438-4730229 FORWARD LENGTH=736;; (*ITAG) Solyc06g076210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43745444-43749319 transcript_region:SL2.40ch06:43745444..43749319+ functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E5_ZEAMP); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00003077g0114.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|0.5|2|0|437 NbS00003077g0115.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0.33|3|0|444 NbC25923856g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|424; (*GB) gi|255587028|ref|XP_002534105.1| (e_value=0.0) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=0.0) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=0.0) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc11g066040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48796501-48803987 transcript_region:SL2.40ch11:48796501..48803987+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00061053g0001.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|65 NbS00001007g0010.1 protein AED:0.25 eAED:0.25 QI:148|0.76|0.64|0.92|0.76|0.71|14|0|848; (*GB) gi|350539862|ref|NP_001234552.1| (e_value=0.0) auxin response factor 8-1 [Solanum lycopersicum];; (*SWP) sp|Q9FGV1|ARFH_ARATH (e_value=0.0) Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2;; (*TAIR) AT5G37020.1 (e_value=0.0) | Symbols: ARF8, ATARF8 | auxin response factor 8 | chr5:14630151-14634106 FORWARD LENGTH=811;; (*ITAG) Solyc03g031970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8739906-8747501 transcript_region:SL2.40ch03:8739906..8747501+ go_terms:GO:0003700 functional_description:"Auxin response factor 8-1 (AHRD V1 **** E0A8P3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00001007g0006.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|81 NbS00001007g0015.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.2|5|0|454; (*GB) gi|5545339|dbj|BAA82556.1| (e_value=5e-157) lectin-like protein kinase [Populus nigra];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=7e-66) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=6e-67) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc02g068300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32860048-32864698 transcript_region:SL2.40ch02:32860048..32864698+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00001007g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|255575267|ref|XP_002528537.1| (e_value=4e-81) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LYX1|LRK82_ARATH (e_value=1e-46) L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana GN=LECRK82 PE=2 SV=1;; (*TAIR) AT5G03140.1 (e_value=8e-48) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:737750-739885 REVERSE LENGTH=711;; (*ITAG) Solyc02g068300.2.1 (e_value=2e-99) genomic_reference:SL2.40ch02 gene_region:32860048-32864698 transcript_region:SL2.40ch02:32860048..32864698+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00004583g0011.1 protein AED:0.03 eAED:0.03 QI:59|1|1|1|1|1|2|16|260; (*GB) gi|225436801|ref|XP_002270202.1| (e_value=8e-73) PREDICTED: uncharacterized protein LOC100256347 [Vitis vinifera];; (*TAIR) AT1G03470.2 (e_value=1e-52) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:866217-867493 REVERSE LENGTH=269;; (*ITAG) Solyc09g074470.2.1 (e_value=2e-129) genomic_reference:SL2.40ch09 gene_region:61759131-61761034 transcript_region:SL2.40ch09:61759131..61761034- functional_description:"Kinase interacting family protein (AHRD V1 ***- D7KCF2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00004583g0012.1 protein AED:0.05 eAED:0.05 QI:72|1|1|1|1|1|4|181|384; (*GB) gi|260177094|gb|ACX33890.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FVQ0|YUC10_ARATH (e_value=2e-143) Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1;; (*TAIR) AT1G48910.1 (e_value=2e-144) | Symbols: YUC10 | Flavin-containing monooxygenase family protein | chr1:18091681-18093774 FORWARD LENGTH=383;; (*ITAG) Solyc09g074430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61731165-61733090 transcript_region:SL2.40ch09:61731165..61733090- go_terms:GO:0055114 functional_description:"Monooxygenase (AHRD V1 ***- B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0055114 NbS00004583g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|167 NbS00004583g0003.1 protein AED:0.19 eAED:0.22 QI:0|0.5|0|1|1|1|3|0|164; (*GB) gi|5327263|emb|CAB46351.1| (e_value=6e-92) major intrinsic protein 2 [Solanum tuberosum];; (*SWP) sp|Q8H5N9|PIP21_ORYSJ (e_value=2e-83) Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1;; (*TAIR) AT2G37170.1 (e_value=6e-84) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc11g069430.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51094793-51097463 transcript_region:SL2.40ch11:51094793..51097463- go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- Q9M4T0_ALLCE); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00004583g0010.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.25|1|1|4|0|100 NbS00004583g0120.1 protein AED:0.02 eAED:0.03 QI:0|0.5|0.2|0.8|0.5|0.4|5|0|598 NbS00004583g0114.1 protein AED:0.05 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|170 NbS00004583g0117.1 protein AED:0.19 eAED:0.19 QI:311|0.85|0.87|1|1|0.87|8|236|325 NbS00004583g0122.1 protein AED:0.25 eAED:0.25 QI:491|0.90|0.83|1|0.54|0.58|12|382|435 NbS00004583g0123.1 protein AED:0.31 eAED:0.37 QI:0|0.66|0.78|1|0.55|0.63|19|462|534 NbC23915509g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|15237644|ref|NP_196036.1| (e_value=2e-42) Nucleotide-sugar transporter family protein [Arabidopsis thaliana];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=6e-44) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=4e-45) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=3e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00033835g0012.1 protein AED:0.38 eAED:0.52 QI:0|0.2|0|0.83|0.2|0.33|6|0|328; (*GB) gi|255537049|ref|XP_002509591.1| (e_value=1e-45) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g007470.1.1 (e_value=5e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00033835g0011.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0.33|0.5|4|0|405; (*GB) gi|297743681|emb|CBI36564.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=5e-52) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=4e-53) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g074050.2.1 (e_value=5e-136) genomic_reference:SL2.40ch04 gene_region:57664050-57667533 transcript_region:SL2.40ch04:57664050..57667533+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00033835g0010.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0|0.2|5|0|355; (*GB) gi|225456159|ref|XP_002278561.1| (e_value=5e-72) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=2e-64) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT1G35710.1 (e_value=1e-65) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120;; (*ITAG) Solyc04g074000.2.1 (e_value=2e-99) genomic_reference:SL2.40ch04 gene_region:57617787-57621291 transcript_region:SL2.40ch04:57617787..57621291- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00031028g0004.1 protein AED:0.19 eAED:0.19 QI:271|1|1|1|1|1|7|351|239; (*GB) gi|255567666|ref|XP_002524812.1| (e_value=8e-114) endo-1,3-1,4-beta-d-glucanase, putative [Ricinus communis];; (*SWP) sp|Q9ZT66|E134_MAIZE (e_value=3e-35) Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1;; (*TAIR) AT3G23600.1 (e_value=1e-108) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239;; (*ITAG) Solyc09g072900.2.1 (e_value=9e-126) genomic_reference:SL2.40ch09 gene_region:61085463-61090631 transcript_region:SL2.40ch09:61085463..61090631+ go_terms:GO:0005515 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0005515 NbS00031028g0011.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.85|1|1|1|7|396|247; (*GB) gi|255567666|ref|XP_002524812.1| (e_value=1e-123) endo-1,3-1,4-beta-d-glucanase, putative [Ricinus communis];; (*SWP) sp|Q9ZT66|E134_MAIZE (e_value=1e-45) Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1;; (*TAIR) AT3G23600.1 (e_value=1e-114) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239;; (*ITAG) Solyc09g072900.2.1 (e_value=1e-143) genomic_reference:SL2.40ch09 gene_region:61085463-61090631 transcript_region:SL2.40ch09:61085463..61090631+ go_terms:GO:0005515 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0005515 NbS00031028g0013.1 protein AED:0.10 eAED:0.10 QI:213|1|0.8|1|0.75|0.6|5|0|252; (*GB) gi|296086710|emb|CBI32345.3| (e_value=2e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4IEV5|REXO4_GIBZE (e_value=1e-15) RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1;; (*TAIR) AT2G48100.4 (e_value=5e-83) | Symbols: | Exonuclease family protein | chr2:19671245-19672384 FORWARD LENGTH=242;; (*ITAG) Solyc09g064740.2.1 (e_value=2e-146) genomic_reference:SL2.40ch09 gene_region:57683157-57686815 transcript_region:SL2.40ch09:57683157..57686815+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- B6T4V3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00006239g0003.1 protein AED:0.05 eAED:0.05 QI:157|1|0.8|1|0.5|0.8|5|0|219; (*GB) gi|224143323|ref|XP_002324916.1| (e_value=6e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25080.1 (e_value=3e-66) | Symbols: | Sas10/Utp3/C1D family | chr5:8643782-8646306 FORWARD LENGTH=217;; (*ITAG) Solyc07g008750.2.1 (e_value=3e-120) genomic_reference:SL2.40ch07 gene_region:3718309-3724386 transcript_region:SL2.40ch07:3718309..3724386+ functional_description:"Nuclear nucleic acid-binding protein C1D (AHRD V1 *-*- C1D_XENLA); contains Interpro domain(s) IPR011082 Exosome-associated factor Rrp47/DNA strand repair C1D "; NbS00022045g0106.1 protein AED:0.18 eAED:0.20 QI:156|0.66|0.68|0.93|0.8|0.75|16|347|833 NbS00001489g0004.1 protein AED:0.16 eAED:0.17 QI:409|1|0.75|1|1|1|4|0|328; (*GB) gi|225462070|ref|XP_002276318.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g55760 [Vitis vinifera];; (*SWP) sp|Q680K8|Y1576_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1;; (*TAIR) AT1G55760.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr1:20847117-20848507 REVERSE LENGTH=329;; (*ITAG) Solyc07g065930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64741683-64744223 transcript_region:SL2.40ch07:64741683..64744223+ go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7KN20_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00000301g0002.1 protein AED:0.08 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|207; (*GB) gi|224133450|ref|XP_002328045.1| (e_value=2e-82) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=5e-79) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=4e-80) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc07g053710.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:59459841-59463049 transcript_region:SL2.40ch07:59459841..59463049- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00000301g0008.1 protein AED:0.11 eAED:0.11 QI:255|1|1|1|0.66|0.85|7|29|420; (*GB) gi|325516250|gb|ADZ24703.1| (e_value=0.0) tyrosine aminotransferase 2 [Solanum pennellii];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=0.0) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=0.0) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59464896-59468538 transcript_region:SL2.40ch07:59464896..59468538- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase-like protein (AHRD V1 **** Q9LVY1_ARATH); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00029081g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.57|1|0.66|0.85|7|146|223; (*GB) gi|225446283|ref|XP_002269268.1| (e_value=6e-106) PREDICTED: uncharacterized methyltransferase WBSCR22 [Vitis vinifera];; (*SWP) sp|Q9CY21|WBS22_MOUSE (e_value=5e-57) Uncharacterized methyltransferase WBSCR22 OS=Mus musculus GN=Wbscr22 PE=2 SV=1;; (*TAIR) AT5G57280.1 (e_value=2e-86) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23204533-23206485 FORWARD LENGTH=289;; (*ITAG) Solyc06g072250.2.1 (e_value=7e-107) genomic_reference:SL2.40ch06 gene_region:40902229-40906959 transcript_region:SL2.40ch06:40902229..40906959+ go_terms:GO:0016435 functional_description:"Methyltransferase WBSCR22 (AHRD V1 **-* B6TAS9_MAIZE); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016435 NbS00029081g0014.1 protein AED:0.19 eAED:0.19 QI:185|0.83|0.71|1|0.66|0.71|7|241|990; (*GB) gi|356529414|ref|XP_003533287.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100798960 [Glycine max];; (*TAIR) AT1G03610.1 (e_value=6e-19) | Symbols: | Protein of unknown function (DUF789) | chr1:901304-902672 FORWARD LENGTH=308;; (*ITAG) Solyc03g098630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00029081g0006.1 protein AED:0.33 eAED:0.34 QI:0|0.66|0.42|1|1|1|7|248|263; (*GB) gi|297745447|emb|CBI40527.3| (e_value=6e-72) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81242|RHL1_ARATH (e_value=9e-51) DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1;; (*TAIR) AT1G48380.1 (e_value=7e-52) | Symbols: RHL1, HYP7 | root hair initiation protein root hairless 1 (RHL1) | chr1:17877637-17879203 REVERSE LENGTH=355;; (*ITAG) Solyc03g098620.2.1 (e_value=9e-108) genomic_reference:SL2.40ch03 gene_region:54371525-54378181 transcript_region:SL2.40ch03:54371525..54378181+ go_terms:GO:0005515,GO:0003677 functional_description:"DNA-binding protein RHL1 (AHRD V1 **-* RHL1_ARATH)"; GO:0005515,GO:0003677 NbS00005391g0002.1 protein AED:0.21 eAED:0.60 QI:84|0|0|1|0|0|2|0|43 NbS00016561g0016.1 protein AED:0.11 eAED:0.11 QI:223|0.71|0.5|1|0.85|0.87|8|0|254; (*GB) gi|255570278|ref|XP_002526099.1| (e_value=3e-53) Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) [Ricinus communis];; (*SWP) sp|Q9LLC1|BCCP2_ARATH (e_value=3e-44) Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1;; (*TAIR) AT5G15530.1 (e_value=2e-45) | Symbols: BCCP2, CAC1-B | biotin carboxyl carrier protein 2 | chr5:5038955-5040437 FORWARD LENGTH=255;; (*ITAG) Solyc06g069530.2.1 (e_value=2e-82) genomic_reference:SL2.40ch06 gene_region:39686045-39688714 transcript_region:SL2.40ch06:39686045..39688714- go_terms:GO:0003989,GO:0004642 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** Q7NZD6_CHRVO); contains Interpro domain(s) IPR001249 Acetyl-CoA biotin carboxyl carrier "; GO:0003989,GO:0004642 NbS00016561g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.63|0.25|0.83|0.72|0.83|12|0|1875; (*GB) gi|356564929|ref|XP_003550699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100806232 [Glycine max];; (*TAIR) AT5G07980.1 (e_value=5e-62) | Symbols: | dentin sialophosphoprotein-related | chr5:2549432-2554669 REVERSE LENGTH=1501;; (*ITAG) Solyc12g038490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35816135-35824240 transcript_region:SL2.40ch12:35816135..35824240- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00016561g0013.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|94; (*GB) gi|82623403|gb|ABB87116.1| (e_value=2e-44) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=2e-40) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=1e-41) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=3e-47) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00016561g0018.1 protein AED:0.33 eAED:0.33 QI:102|1|1|1|0.33|0.5|4|156|94; (*GB) gi|15241477|ref|NP_196413.1| (e_value=5e-45) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q9SD88|ASTER_ARATH (e_value=2e-46) Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1;; (*TAIR) AT5G07960.1 (e_value=1e-47) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:2542350-2543253 FORWARD LENGTH=107;; (*ITAG) Solyc06g069520.2.1 (e_value=3e-56) genomic_reference:SL2.40ch06 gene_region:39682005-39684690 transcript_region:SL2.40ch06:39682005..39684690+ go_terms:GO:0005515 functional_description:"UPF0139 membrane protein At5g07960 (AHRD V1 ***- U139_ARATH); contains Interpro domain(s) IPR005351 Uncharacterised protein family UPF0139 "; GO:0005515 NbS00022628g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|456; (*GB) gi|225435652|ref|XP_002283361.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Vitis vinifera];; (*SWP) sp|Q9ZQA1|PP188_ARATH (e_value=2e-97) Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1;; (*TAIR) AT2G36730.1 (e_value=1e-98) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15405068-15406573 REVERSE LENGTH=501;; (*ITAG) Solyc01g020340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:29350551-29354410 transcript_region:SL2.40ch01:29350551..29354410+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00022628g0012.1 protein AED:0.16 eAED:0.16 QI:48|1|0.85|1|0.83|0.71|7|129|428; (*GB) gi|380751740|gb|AFE56211.1| (e_value=1e-156) terpene synthase [Camellia sinensis];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=1e-150) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT3G14520.1 (e_value=1e-79) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4875868-4878243 REVERSE LENGTH=605;; (*ITAG) Solyc06g060180.1.1 (e_value=6e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34531453-34535121 transcript_region:SL2.40ch06:34531453..34535121+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00022628g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|375151700|gb|AFA36428.1| (e_value=5e-101) dirigent-like protein [Solanum tuberosum];; (*SWP) sp|P13240|DR206_PEA (e_value=2e-12) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G58170.1 (e_value=3e-75) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:21536188-21536745 FORWARD LENGTH=185;; (*ITAG) Solyc01g021600.2.1 (e_value=3e-101) genomic_reference:SL2.40ch01 gene_region:32100477-32101246 transcript_region:SL2.40ch01:32100477..32101246+ functional_description:"Disease resistance response protein (AHRD V1 ***- A8IXC7_BRACM); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00055066g0001.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.75|1|1|4|0|95; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-12) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g010680.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:5698129-5701473 transcript_region:SL2.40ch01:5698129..5701473+ functional_description:"Genomic DNA chromosome 5 P1 clone MRD20 (AHRD V1 *--- Q9FH72_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00003332g0008.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|286; (*GB) gi|343171942|gb|AEL98675.1| (e_value=1e-17) winged-helix DNA-binding transcription factor family protein, partial [Silene latifolia];; (*TAIR) AT5G08780.1 (e_value=3e-17) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr5:2856782-2858810 FORWARD LENGTH=457;; (*ITAG) Solyc11g013680.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6940154-6940525 transcript_region:SL2.40ch11:6940154..6940525+ go_terms:GO:0005634 functional_description:"High mobility group family (AHRD V1 -**- B9H4N5_POPTR); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634 NbS00003332g0002.1 protein AED:0.22 eAED:0.22 QI:0|0.90|0.83|0.91|0.90|0.83|12|422|580; (*GB) gi|255561807|ref|XP_002521913.1| (e_value=0.0) PLE, putative [Ricinus communis];; (*SWP) sp|Q9SIS3|MA656_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1;; (*TAIR) AT2G01910.1 (e_value=0.0) | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated protein (MAP65/ASE1) family protein | chr2:417191-420182 FORWARD LENGTH=608;; (*ITAG) Solyc04g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1974768-1980633 transcript_region:SL2.40ch04:1974768..1980633+ go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** C0JA45_ORYPU); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00003332g0007.1 protein AED:0.57 eAED:0.58 QI:0|0|0|1|0|0.5|2|0|117 NbS00040373g0004.1 protein AED:0.11 eAED:0.18 QI:0|0|0|0.85|0.83|0.71|7|0|408; (*GB) gi|297739704|emb|CBI29886.3| (e_value=4e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LT35|NEK6_ARATH (e_value=1e-81) Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=6e-83) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc11g061960.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45753595-45760507 transcript_region:SL2.40ch11:45753595..45760507+ go_terms:GO:0019903 functional_description:"Serine/threonine kinase (AHRD V1 *-*- C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019903 NbS00013626g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.8|0.66|1|1|1|6|0|527; (*GB) gi|350538127|ref|NP_001233816.1| (e_value=0.0) laccase precursor [Solanum lycopersicum];; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=0.0) Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1;; (*TAIR) AT3G09220.1 (e_value=0.0) | Symbols: LAC7 | laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567;; (*ITAG) Solyc05g043360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:55217891-55222581 transcript_region:SL2.40ch05:55217891..55222581+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00013626g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|0|0|4|0|271; (*GB) gi|11837|emb|CAA77357.1| (e_value=4e-160) NADH dehydrogenase 27kD subunit [Nicotiana tabacum];; (*SWP) sp|P06409|NDHK_TOBAC (e_value=2e-135) NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nicotiana tabacum GN=ndhK PE=3 SV=2;; (*ITAG) ATCG00430.1 (e_value=1e-117) | Symbols: PSBG | photosystem II reaction center protein G | chrC:49257-49934 REVERSE LENGTH=225;; (*ITAG) Solyc01g007300.1.1 (e_value=4e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1846093-1846770 transcript_region:SL2.40ch01:1846093..1846770- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit K chloroplastic (AHRD V1 ***- D3WB90_9BORA); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00013626g0008.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|102; (*GB) gi|11465960|ref|NP_054502.1| (e_value=9e-62) NADH dehydrogenase subunit J [Nicotiana tabacum];; (*SWP) sp|P12201|NDHJ_TOBAC (e_value=3e-63) NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tabacum GN=ndhJ PE=3 SV=1;; (*ITAG) ATCG00420.1 (e_value=2e-57) | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=158;; (*ITAG) Solyc01g007290.1.1 (e_value=5e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1845511-1845987 transcript_region:SL2.40ch01:1845511..1845987- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit J (AHRD V1 ***- NDHJ_TRIEI); contains Interpro domain(s) IPR020396 NADH:ubiquinone oxidoreductase, 30 kDa subunit, conserved site IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00013161g0004.1 protein AED:0.25 eAED:0.31 QI:0|0.5|0.4|1|0.75|0.8|5|0|504; (*GB) gi|255568860|ref|XP_002525401.1| (e_value=3e-152) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G60790.1 (e_value=4e-143) | Symbols: TBL2 | Plant protein of unknown function (DUF828) | chr1:22380193-22382216 REVERSE LENGTH=541;; (*ITAG) Solyc05g005100.2.1 (e_value=5e-174) genomic_reference:SL2.40ch05 gene_region:107757-110824 transcript_region:SL2.40ch05:107757..110824- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbC25394415g0003.1 protein AED:0.29 eAED:0.67 QI:84|0|0|1|1|1|2|0|38 NbS00044437g0005.1 protein AED:0.30 eAED:0.30 QI:72|1|0|1|1|0.5|2|0|76; (*GB) gi|359495718|ref|XP_003635071.1| (e_value=2e-16) PREDICTED: putative PAP-specific phosphatase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=2e-14) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1;; (*TAIR) AT4G05090.1 (e_value=2e-15) | Symbols: | Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397;; (*ITAG) Solyc02g079270.2.1 (e_value=3e-30) genomic_reference:SL2.40ch02 gene_region:38449863-38458570 transcript_region:SL2.40ch02:38449863..38458570+ go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase-like protein (AHRD V1 **** Q682R6_ARATH); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008441 NbS00000187g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|1|1|6|0|121 NbS00018501g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.28|0.85|0.5|0.42|7|222|320; (*GB) gi|147841527|emb|CAN75323.1| (e_value=2e-68) hypothetical protein VITISV_003765 [Vitis vinifera];; (*TAIR) AT5G62960.1 (e_value=2e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc06g071540.2.1 (e_value=3e-90) genomic_reference:SL2.40ch06 gene_region:40435464-40437509 transcript_region:SL2.40ch06:40435464..40437509+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00018501g0002.1 protein AED:0.32 eAED:0.36 QI:350|0.33|0.75|1|0|0.25|4|108|81; (*GB) gi|297725737|ref|NP_001175232.1| (e_value=3e-24) Os07g0523700 [Oryza sativa Japonica Group];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=1e-25) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.2 (e_value=5e-26) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8241841-8243805 REVERSE LENGTH=154;; (*ITAG) Solyc06g071530.2.1 (e_value=7e-27) genomic_reference:SL2.40ch06 gene_region:40431000-40433125 transcript_region:SL2.40ch06:40431000..40433125+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00018501g0004.1 protein AED:0.23 eAED:0.36 QI:45|0|0|1|1|1|2|0|106; (*GB) gi|225457011|ref|XP_002279033.1| (e_value=3e-46) PREDICTED: transcription factor MYB98 [Vitis vinifera];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=1e-46) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT4G18770.1 (e_value=9e-48) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427;; (*ITAG) Solyc06g071520.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40426984-40429093 transcript_region:SL2.40ch06:40426984..40429093+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00059232g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.8|1|1|5|0|161 NbC24056408g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|0|1|0|82; (*GB) gi|110180220|gb|ABG54345.1| (e_value=2e-46) double HA-tagged mitogen activated protein kinase 18 [synthetic construct];; (*SWP) sp|Q9C5C0|MPK18_ARATH (e_value=5e-48) Mitogen-activated protein kinase 18 OS=Arabidopsis thaliana GN=MPK18 PE=1 SV=4;; (*TAIR) AT1G53510.1 (e_value=4e-49) | Symbols: ATMPK18, MPK18 | mitogen-activated protein kinase 18 | chr1:19970961-19974158 REVERSE LENGTH=615;; (*ITAG) Solyc07g062080.2.1 (e_value=3e-50) genomic_reference:SL2.40ch07 gene_region:62129987-62135063 transcript_region:SL2.40ch07:62129987..62135063+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 18 (AHRD V1 **** D7KKI7_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00028191g0007.1 protein AED:0.19 eAED:0.19 QI:360|0.93|0.93|1|0.73|0.75|16|815|497; (*GB) gi|359482520|ref|XP_002280228.2| (e_value=0.0) PREDICTED: beta-galactosidase 17-like [Vitis vinifera];; (*SWP) sp|Q93Z24|BGA17_ARATH (e_value=0.0) Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1;; (*TAIR) AT1G72990.2 (e_value=0.0) | Symbols: BGAL17 | beta-galactosidase 17 | chr1:27457480-27461867 REVERSE LENGTH=635;; (*ITAG) Solyc06g062660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35929195-35941667 transcript_region:SL2.40ch06:35929195..35941667- go_terms:GO:0004565 functional_description:"Beta-galactosidase (AHRD V1 **** D7KR60_ARALY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565 NbS00012964g0004.1 protein AED:0.52 eAED:0.52 QI:0|0.5|0|0.66|1|1|3|0|99; (*GB) gi|345547465|gb|AEO12090.1| (e_value=2e-45) acyl carrier protein [Capsicum frutescens];; (*SWP) sp|P52411|ACP1_CUPLA (e_value=7e-41) Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1;; (*TAIR) AT5G27200.1 (e_value=2e-32) | Symbols: ACP5 | acyl carrier protein 5 | chr5:9571185-9571989 FORWARD LENGTH=139;; (*ITAG) Solyc01g067730.2.1 (e_value=8e-47) genomic_reference:SL2.40ch01 gene_region:69065032-69067385 transcript_region:SL2.40ch01:69065032..69067385+ go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- Q9XF20_CAPCH); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00024200g0011.1 protein AED:0.20 eAED:0.26 QI:20|0.14|0|1|0|0|8|0|333; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=1e-130) strictosidine synthase, putative [Ricinus communis];; (*SWP) sp|P68174|STSY_RAUMA (e_value=1e-33) Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1;; (*TAIR) AT1G08470.1 (e_value=2e-121) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=2e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00024200g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0|1|0|0.25|4|0|200; (*GB) gi|224054234|ref|XP_002298158.1| (e_value=2e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q803F5|APMAP_DANRE (e_value=2e-18) Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1;; (*TAIR) AT1G08470.1 (e_value=4e-81) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=6e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00024200g0010.1 protein AED:0.39 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|143; (*GB) gi|225436102|ref|XP_002278088.1| (e_value=2e-46) PREDICTED: adipocyte plasma membrane-associated protein-like isoform 1 [Vitis vinifera];; (*TAIR) AT5G22020.1 (e_value=3e-35) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr5:7287878-7289357 REVERSE LENGTH=395;; (*ITAG) Solyc06g073910.2.1 (e_value=1e-53) genomic_reference:SL2.40ch06 gene_region:42017256-42019960 transcript_region:SL2.40ch06:42017256..42019960+ go_terms:GO:0004064 functional_description:"Strictosidine synthase (AHRD V1 ***- B6TK54_MAIZE); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00029839g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|294; (*ITAG) Solyc11g039800.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029839g0011.1 protein AED:0.30 eAED:0.46 QI:0|0.66|0.5|1|0.66|0.75|4|31|161; (*GB) gi|147845245|emb|CAN83374.1| (e_value=2e-70) hypothetical protein VITISV_028296 [Vitis vinifera];; (*TAIR) AT2G22120.2 (e_value=3e-68) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363;; (*ITAG) Solyc04g054330.2.1 (e_value=4e-77) genomic_reference:SL2.40ch04 gene_region:51476048-51484873 transcript_region:SL2.40ch04:51476048..51484873+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00029839g0005.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|356540054|ref|XP_003538506.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100820355 [Glycine max];; (*TAIR) AT2G22120.1 (e_value=5e-15) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396768 FORWARD LENGTH=324;; (*ITAG) Solyc04g054330.2.1 (e_value=2e-23) genomic_reference:SL2.40ch04 gene_region:51476048-51484873 transcript_region:SL2.40ch04:51476048..51484873+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00041288g0007.1 protein AED:0.19 eAED:0.22 QI:0|0.44|0.2|0.9|0.33|0.4|10|2130|398; (*GB) gi|359489301|ref|XP_002270627.2| (e_value=3e-161) PREDICTED: uncharacterized protein LOC100266721 [Vitis vinifera];; (*TAIR) AT2G44760.1 (e_value=2e-137) | Symbols: | Domain of unknown function (DUF3598) | chr2:18452937-18454785 REVERSE LENGTH=500;; (*ITAG) Solyc10g037900.1.1 (e_value=1e-99) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:17841063-17843943 transcript_region:SL2.40ch10:17841063..17843943- functional_description:"Unknown Protein (AHRD V1)"; NbS00062007g0005.1 protein AED:0.23 eAED:0.23 QI:478|0.75|0.77|1|0.62|0.77|9|0|452; (*GB) gi|359489894|ref|XP_002274331.2| (e_value=9e-164) PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Vitis vinifera];; (*SWP) sp|Q86TM6|SYVN1_HUMAN (e_value=1e-63) E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2;; (*TAIR) AT3G16090.1 (e_value=3e-157) | Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492;; (*ITAG) Solyc06g072790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41277400-41284217 transcript_region:SL2.40ch06:41277400..41284217+ go_terms:GO:0005515,GO:0016881 functional_description:"RING finger protein (AHRD V1 **-- A1C428_ASPCL); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0016881 NbS00035779g0007.1 protein AED:0.09 eAED:0.09 QI:672|1|0.66|1|0.5|0.33|3|0|212; (*GB) gi|359489602|ref|XP_002274480.2| (e_value=1e-84) PREDICTED: F-box/kelch-repeat protein SKIP4-like [Vitis vinifera];; (*SWP) sp|Q9M2C9|SKIP4_ARATH (e_value=4e-61) F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1;; (*TAIR) AT3G61350.1 (e_value=3e-62) | Symbols: SKIP4 | SKP1 interacting partner 4 | chr3:22703203-22704374 FORWARD LENGTH=358;; (*ITAG) Solyc01g094520.2.1 (e_value=5e-123) genomic_reference:SL2.40ch01 gene_region:77718537-77721333 transcript_region:SL2.40ch01:77718537..77721333- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00035779g0023.1 protein AED:0.17 eAED:0.20 QI:0|0.25|0|1|0.5|0.4|5|0|329; (*GB) gi|225454196|ref|XP_002273879.1| (e_value=1e-102) PREDICTED: riboflavin biosynthesis protein RibD-like [Vitis vinifera];; (*SWP) sp|Q55158|RIBD_SYNY3 (e_value=1e-53) Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribD PE=3 SV=1;; (*TAIR) AT4G20960.1 (e_value=9e-85) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:11212077-11213530 FORWARD LENGTH=426;; (*ITAG) Solyc01g094500.2.1 (e_value=4e-157) genomic_reference:SL2.40ch01 gene_region:77712515-77715408 transcript_region:SL2.40ch01:77712515..77715408- go_terms:GO:0016787,GO:0003824,GO:0055114 functional_description:"Riboflavin biosynthesis protein ribD (AHRD V1 ***- B6TRH4_MAIZE); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0016787,GO:0003824,GO:0055114 NbS00035779g0024.1 protein AED:0.43 eAED:0.71 QI:0|0|0.33|1|0|0|3|205|96 NbS00035779g0020.1 protein AED:0.10 eAED:0.10 QI:0|1|0.8|1|1|1|5|0|210; (*GB) gi|8515104|gb|AAF75828.1|AF116851_1 (e_value=4e-123) LIM domain protein PLIM-2 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-60) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G01780.1 (e_value=4e-96) | Symbols: | GATA type zinc finger transcription factor family protein | chr1:282919-284082 FORWARD LENGTH=205;; (*ITAG) Solyc01g094320.2.1 (e_value=6e-124) genomic_reference:SL2.40ch01 gene_region:77600987-77603710 transcript_region:SL2.40ch01:77600987..77603710- go_terms:GO:0042802 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00035779g0019.1 protein AED:0.28 eAED:0.28 QI:162|1|1|1|1|1|2|214|164; (*GB) gi|224127660|ref|XP_002320129.1| (e_value=3e-26) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g049940.2.1 (e_value=2e-29) genomic_reference:SL2.40ch05 gene_region:58931871-58935359 transcript_region:SL2.40ch05:58931871..58935359+ functional_description:"T1N6.11 related (AHRD V1 ***- Q2HVL0_MEDTR)"; NbS00035779g0028.1 protein AED:0.27 eAED:0.28 QI:824|0.72|0.75|1|0.45|0.58|12|879|355; (*GB) gi|255541530|ref|XP_002511829.1| (e_value=6e-93) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01770.1 (e_value=2e-79) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632;; (*ITAG) Solyc01g094330.2.1 (e_value=2e-140) genomic_reference:SL2.40ch01 gene_region:77606607-77612796 transcript_region:SL2.40ch01:77606607..77612796- functional_description:"Expressed protein with function in citronellol catabolism (AHRD V1 **-- C0VQA1_9GAMM); contains Interpro domain(s) IPR010839 Protein of unknown function DUF1446 "; NbS00041727g0010.1 protein AED:0.23 eAED:0.23 QI:249|0.57|0.75|1|1|1|8|0|279; (*GB) gi|3811293|gb|AAC69450.1| (e_value=3e-164) putative serine/threonine protein kinase [Nicotiana tabacum];; (*SWP) sp|P0C5D6|SAPK3_ORYSJ (e_value=4e-131) Serine/threonine-protein kinase SAPK3 OS=Oryza sativa subsp. japonica GN=SAPK3 PE=1 SV=1;; (*TAIR) AT4G33950.1 (e_value=4e-120) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 | Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362;; (*ITAG) Solyc08g077780.2.1 (e_value=4e-153) genomic_reference:SL2.40ch08 gene_region:58856672-58862420 transcript_region:SL2.40ch08:58856672..58862420+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00041727g0008.1 protein AED:0.23 eAED:0.23 QI:81|0.84|0.85|1|0.61|0.78|14|376|469; (*GB) gi|225465123|ref|XP_002273039.1| (e_value=0.0) PREDICTED: BRCA1-associated protein-like [Vitis vinifera];; (*SWP) sp|Q99MP8|BRAP_MOUSE (e_value=2e-82) BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1;; (*TAIR) AT2G26000.2 (e_value=0.0) | Symbols: BRIZ2 | zinc finger (C3HC4-type RING finger) family protein | chr2:11082403-11085137 FORWARD LENGTH=479;; (*ITAG) Solyc03g120000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62561569-62567960 transcript_region:SL2.40ch03:62561569..62567960- go_terms:GO:0042802 functional_description:"RING finger protein (AHRD V1 **-- B6JVU3_SCHJY); contains Interpro domain(s) IPR011422 BRCA1-associated 2 "; GO:0042802 NbS00041727g0012.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|1|1|5|0|341; (*GB) gi|359474420|ref|XP_003631460.1| (e_value=3e-172) PREDICTED: uncharacterized protein LOC100853434 [Vitis vinifera];; (*TAIR) AT4G17070.1 (e_value=1e-152) | Symbols: | peptidyl-prolyl cis-trans isomerases | chr4:9595523-9598066 REVERSE LENGTH=343;; (*ITAG) Solyc08g077790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58868426-58873671 transcript_region:SL2.40ch08:58868426..58873671+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase-like 3 (AHRD V1 *-*- PPIL3_CHICK); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00025020g0006.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0.25|1|1|0.75|4|0|246; (*GB) gi|88683134|emb|CAJ77501.1| (e_value=3e-130) expp1 protein precursor [Solanum tuberosum];; (*TAIR) AT3G44150.1 (e_value=1e-110) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15887617-15888728 FORWARD LENGTH=246;; (*ITAG) Solyc10g081820.1.1 (e_value=7e-130) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62119410-62124645 transcript_region:SL2.40ch10:62119410..62124645+ functional_description:"Expp1 protein (AHRD V1 ***- Q2HPL4_SOLTU)"; NbS00025020g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|129; (*GB) gi|225439364|ref|XP_002269714.1| (e_value=3e-42) PREDICTED: RING-H2 finger protein ATL70-like [Vitis vinifera];; (*SWP) sp|Q8RX29|ATL70_ARATH (e_value=9e-32) RING-H2 finger protein ATL70 OS=Arabidopsis thaliana GN=ATL70 PE=2 SV=1;; (*TAIR) AT2G35910.1 (e_value=7e-33) | Symbols: | RING/U-box superfamily protein | chr2:15073225-15073878 REVERSE LENGTH=217;; (*ITAG) Solyc10g081790.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62109426-62109998 transcript_region:SL2.40ch10:62109426..62109998+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00027467g0008.1 protein AED:0.14 eAED:0.15 QI:37|0.58|0.46|1|0.66|0.61|13|0|1105; (*GB) gi|225425392|ref|XP_002276961.1| (e_value=0.0) PREDICTED: histidine kinase 3 [Vitis vinifera];; (*SWP) sp|Q9C5U1|AHK3_ARATH (e_value=0.0) Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1;; (*TAIR) AT1G27320.1 (e_value=0.0) | Symbols: AHK3, HK3 | histidine kinase 3 | chr1:9487780-9492027 FORWARD LENGTH=1036;; (*ITAG) Solyc05g015610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:11522127-11527984 transcript_region:SL2.40ch05:11522127..11527984+ go_terms:GO:0009884 functional_description:"Histidine kinase cytokinin receptor (AHRD V1 **** B9GZP2_POPTR); contains Interpro domain(s) IPR006189 CHASE "; GO:0009884 NbS00027552g0005.1 protein AED:0.24 eAED:0.24 QI:311|1|1|1|0.25|0.2|5|243|628; (*GB) gi|113205231|gb|AAT39303.2| (e_value=0.0) Myosin heavy chain-like protein, putative [Solanum demissum];; (*SWP) sp|Q9LSS5|ICR3_ARATH (e_value=9e-121) Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1;; (*TAIR) AT5G60210.2 (e_value=7e-122) | Symbols: RIP5 | ROP interactive partner 5 | chr5:24243529-24245889 REVERSE LENGTH=564;; (*ITAG) Solyc11g072490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52765942-52769984 transcript_region:SL2.40ch11:52765942..52769984+ functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00027552g0002.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|264; (*GB) gi|113205234|gb|AAT39305.2| (e_value=1e-92) Dof domain, zinc finger family protein [Solanum demissum];; (*SWP) sp|Q8LE43|DOF21_ARATH (e_value=1e-39) Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2;; (*TAIR) AT2G28510.1 (e_value=1e-40) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr2:12199383-12200627 REVERSE LENGTH=288;; (*ITAG) Solyc06g075370.2.1 (e_value=9e-90) genomic_reference:SL2.40ch06 gene_region:43174877-43176928 transcript_region:SL2.40ch06:43174877..43176928- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 9 (AHRD V1 *-*- A5HWF8_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00019362g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|0|0|2|574|123; (*GB) gi|255563014|ref|XP_002522511.1| (e_value=6e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G28540.1 (e_value=3e-32) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10035696-10036007 FORWARD LENGTH=103;; (*ITAG) Solyc10g008850.1.1 (e_value=5e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2905730-2906110 transcript_region:SL2.40ch10:2905730..2906110- functional_description:"Os06g0525000 protein (Fragment) (AHRD V1 *-*- Q0DBU7_ORYSJ)"; NbS00019362g0006.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|0.5|2|0|214; (*GB) gi|255568357|ref|XP_002525153.1| (e_value=7e-140) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=2e-138) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-139) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc10g008840.2.1 (e_value=1e-155) genomic_reference:SL2.40ch10 gene_region:2900438-2901941 transcript_region:SL2.40ch10:2900438..2901941+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00019362g0010.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0|4|0|226; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-28) hypothetical protein [Nicotiana tabacum]; NbS00019362g0009.1 protein AED:0.33 eAED:0.64 QI:0|0|0|1|0|0|2|0|81 NbS00014850g0005.1 protein AED:0.08 eAED:0.08 QI:229|1|0.66|1|0|0|3|0|772; (*GB) gi|225440714|ref|XP_002275038.1| (e_value=0.0) PREDICTED: chaperone protein ClpB1-like [Vitis vinifera];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=7e-19) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT3G52490.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc10g082000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62233723-62237147 transcript_region:SL2.40ch10:62233723..62237147- go_terms:GO:0019538 functional_description:"Heat shock-like protein (AHRD V1 **-- B5A254_ARATH); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00039291g0104.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.75|0.33|0|4|0|173 NbS00011891g0002.1 protein AED:0.34 eAED:0.35 QI:15|0.33|0.2|0.9|1|1|10|0|403; (*GB) gi|225432169|ref|XP_002267688.1| (e_value=3e-131) PREDICTED: novel plant SNARE 13 [Vitis vinifera];; (*SWP) sp|Q9LNH6|NPS12_ARATH (e_value=7e-106) Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1;; (*TAIR) AT1G48240.1 (e_value=5e-107) | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 | chr1:17809223-17811656 REVERSE LENGTH=265;; (*ITAG) Solyc12g098950.1.1 (e_value=9e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64632421-64638462 transcript_region:SL2.40ch12:64632421..64638462+ go_terms:GO:0016020 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6U1B4_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00049598g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=5e-26) NRC1 [Solanum lycopersicum];; (*ITAG) Solyc10g047320.1.1 (e_value=8e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00002579g0017.1 protein AED:0.04 eAED:0.04 QI:24|1|1|1|1|1|2|216|253; (*GB) gi|255583278|ref|XP_002532403.1| (e_value=3e-66) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42260.1 (e_value=1e-58) | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:17602240-17603283 REVERSE LENGTH=259;; (*ITAG) Solyc10g080400.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61005071-61007492 transcript_region:SL2.40ch10:61005071..61007492+ functional_description:"Polychome UV-B-insensitive 4 (AHRD V1 ***- D7LI35_ARALY)"; NbS00002579g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.6|0.8|1|1|5|182|590; (*GB) gi|255559629|ref|XP_002520834.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q8VZR7|PTR30_ARATH (e_value=0.0) Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2;; (*TAIR) AT2G40460.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16897123-16901171 FORWARD LENGTH=583;; (*ITAG) Solyc06g050900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30259226-30264985 transcript_region:SL2.40ch06:30259226..30264985+ go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O22305_LOTJA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00002579g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0|0.33|3|264|232; (*GB) gi|15230422|ref|NP_187823.1| (e_value=8e-137) RAB GTPase-like protein A4D [Arabidopsis thaliana];; (*SWP) sp|Q9LH50|RAA4D_ARATH (e_value=2e-138) Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1;; (*TAIR) AT3G12160.1 (e_value=2e-139) | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4D | chr3:3879495-3880437 REVERSE LENGTH=222;; (*ITAG) Solyc03g064020.2.1 (e_value=1e-150) genomic_reference:SL2.40ch03 gene_region:34600518-34601681 transcript_region:SL2.40ch03:34600518..34601681+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_HUMAN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00002579g0018.1 protein AED:0.30 eAED:0.45 QI:85|0.16|0|0.71|0.66|0.42|7|0|170; (*GB) gi|4426953|gb|AAD20626.1| (e_value=2e-65) squalene synthase [Capsicum annuum];; (*SWP) sp|P53800|FDFT_NICBE (e_value=2e-64) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34650.1 (e_value=7e-60) | Symbols: SQS2 | squalene synthase 2 | chr4:16542377-16544915 FORWARD LENGTH=413;; (*ITAG) Solyc10g054130.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50138928-50144839 transcript_region:SL2.40ch10:50138928..50144839+ go_terms:GO:0009058,GO:0016021 functional_description:"Squalene synthase (AHRD V1 ***- Q9XF02_CAPAN); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0009058,GO:0016021 NbS00017772g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.66|1|1|3|0|100 NbS00017772g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|225451501|ref|XP_002271949.1| (e_value=1e-105) PREDICTED: transcription factor TCP20-like [Vitis vinifera];; (*SWP) sp|Q9LSD5|TCP20_ARATH (e_value=8e-66) Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1;; (*TAIR) AT3G27010.1 (e_value=6e-67) | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | chr3:9957810-9958754 REVERSE LENGTH=314;; (*ITAG) Solyc02g068200.1.1 (e_value=3e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32795698-32796516 transcript_region:SL2.40ch02:32795698..32796516+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00017772g0007.1 protein AED:0.32 eAED:0.36 QI:0|0.5|0.55|1|0.87|0.88|9|0|636; (*GB) gi|298571730|gb|ACL83357.2| (e_value=0.0) yellow stripe-like protein 6.4 [Brassica juncea];; (*SWP) sp|Q6R3K6|YSL6_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL6 OS=Arabidopsis thaliana GN=YSL6 PE=2 SV=2;; (*TAIR) AT3G27020.1 (e_value=0.0) | Symbols: YSL6 | YELLOW STRIPE like 6 | chr3:9961623-9964461 REVERSE LENGTH=676;; (*ITAG) Solyc02g094280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49437687-49445952 transcript_region:SL2.40ch02:49437687..49445952+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00009801g0007.1 protein AED:0.12 eAED:0.17 QI:0|0.57|0.62|1|0.71|0.62|8|180|584; (*GB) gi|147838831|emb|CAN67151.1| (e_value=2e-112) hypothetical protein VITISV_019728 [Vitis vinifera];; (*TAIR) AT2G24070.2 (e_value=7e-62) | Symbols: QWRF4 | Family of unknown function (DUF566) | chr2:10231822-10233986 REVERSE LENGTH=609;; (*ITAG) Solyc07g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:677311-682581 transcript_region:SL2.40ch07:677311..682581- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00010313g0001.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|224110510|ref|XP_002315542.1| (e_value=7e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21550.1 (e_value=7e-83) | Symbols: DMP2, AtDMP2 | DUF679 domain membrane protein 2 | chr3:7591708-7592262 REVERSE LENGTH=184;; (*ITAG) Solyc01g080490.2.1 (e_value=1e-110) genomic_reference:SL2.40ch01 gene_region:72232617-72233453 transcript_region:SL2.40ch01:72232617..72233453- functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00053071g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|261; (*GB) gi|224120416|ref|XP_002318324.1| (e_value=3e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=1e-38) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G17950.1 (e_value=5e-76) | Symbols: ATMYB52, BW52, MYB52 | myb domain protein 52 | chr1:6177764-6179063 FORWARD LENGTH=249;; (*ITAG) Solyc04g064540.2.1 (e_value=1e-64) genomic_reference:SL2.40ch04 gene_region:54812889-54815114 transcript_region:SL2.40ch04:54812889..54815114- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- B9I4W4_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00053071g0008.1 protein AED:0.16 eAED:0.16 QI:186|0.72|0.66|1|0.45|0.5|12|261|466; (*GB) gi|225455720|ref|XP_002267181.1| (e_value=0.0) PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera];; (*SWP) sp|Q54Y85|DPOE2_DICDI (e_value=9e-66) DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1;; (*TAIR) AT5G22110.1 (e_value=0.0) | Symbols: ATDPB2, CYL2, DPB2 | DNA polymerase epsilon subunit B2 | chr5:7331071-7334178 REVERSE LENGTH=526;; (*ITAG) Solyc03g098250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54048982-54054503 transcript_region:SL2.40ch03:54048982..54054503+ go_terms:GO:0003887 functional_description:"DNA polymerase epsilon subunit 2 (AHRD V1 **** B6SKK3_MAIZE); contains Interpro domain(s) IPR016266 DNA polymerase epsilon, subunit B "; GO:0003887 NbC26139093g0003.1 protein AED:0.67 eAED:0.87 QI:51|0|0|1|1|1|3|0|80; (*ITAG) Solyc07g049740.2.1 (e_value=3e-25) genomic_reference:SL2.40ch07 gene_region:57410329-57416117 transcript_region:SL2.40ch07:57410329..57416117+ go_terms:GO:0005515 functional_description:"Lipid-A-disaccharide synthase-like protein (AHRD V1 ***- D8QYK7_SELML); contains Interpro domain(s) IPR003835 Glycosyl transferase, family 19 "; GO:0005515 NbS00027766g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.6|1|0.25|0.6|5|0|278; (*GB) gi|356518679|ref|XP_003528006.1| (e_value=6e-99) PREDICTED: auxin-induced protein 5NG4-like [Glycine max];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-24) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G64700.1 (e_value=1e-38) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:25865190-25866845 REVERSE LENGTH=359;; (*ITAG) Solyc03g080070.2.1 (e_value=4e-149) genomic_reference:SL2.40ch03 gene_region:45506478-45509718 transcript_region:SL2.40ch03:45506478..45509718+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H8G2_ORYSJ); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00027766g0007.1 protein AED:0.17 eAED:0.17 QI:311|1|0.9|1|1|1|10|0|445; (*GB) gi|225455177|ref|XP_002270121.1| (e_value=0.0) PREDICTED: uncharacterized calcium-binding protein At1g02270 [Vitis vinifera];; (*SWP) sp|O81916|YC22_ARATH (e_value=0.0) Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2;; (*TAIR) AT5G54130.2 (e_value=0.0) | Symbols: | Calcium-binding endonuclease/exonuclease/phosphatase family | chr5:21962900-21965279 FORWARD LENGTH=436;; (*ITAG) Solyc03g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45528423-45532481 transcript_region:SL2.40ch03:45528423..45532481+ go_terms:GO:0005509 functional_description:"Carbon catabolite repressor protein 4 homolog 3 (AHRD V1 *--- CCR4C_ARATH); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0005509 NbS00027766g0009.1 protein AED:0.16 eAED:0.40 QI:0|0|0|1|0|0|2|0|77 NbS00027247g0005.1 protein AED:0.11 eAED:0.14 QI:84|0.62|0.44|1|0.87|0.77|9|0|1366; (*GB) gi|359493172|ref|XP_003634532.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252053 [Vitis vinifera];; (*SWP) sp|Q6GQV7|EDRF1_MOUSE (e_value=1e-29) Erythroid differentiation-related factor 1 OS=Mus musculus GN=Edrf1 PE=2 SV=1;; (*TAIR) AT1G35660.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197655 FORWARD LENGTH=1405;; (*ITAG) Solyc06g065360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37177694-37184339 transcript_region:SL2.40ch06:37177694..37184339+ functional_description:"Erythroid differentiation-related factor 1-like protein (AHRD V1 ***- Q5N730_ORYSJ)"; NbS00031598g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|147862982|emb|CAN82996.1| (e_value=0.0) hypothetical protein VITISV_022195 [Vitis vinifera];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=2e-11) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT4G11570.2 (e_value=8e-171) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373;; (*ITAG) Solyc08g081030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61325427-61326569 transcript_region:SL2.40ch08:61325427..61326569- go_terms:GO:0016787,GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IA (AHRD V1 *-*- D9WQP9_STRHY); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787,GO:0008152 NbS00012670g0001.1 protein AED:0.29 eAED:0.39 QI:0|0.66|0.2|1|1|1|10|0|1867; (*GB) gi|302141758|emb|CBI18961.3| (e_value=7e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3ED78|C3H7_ARATH (e_value=3e-44) Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1;; (*TAIR) AT1G21580.1 (e_value=5e-60) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:7557822-7565655 REVERSE LENGTH=2166;; (*ITAG) Solyc04g057990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54248696-54262878 transcript_region:SL2.40ch04:54248696..54262878- go_terms:GO:0005524,GO:0008270 functional_description:"mRNA 3&apos-end-processing protein YTH1 (AHRD V1 *--- B6JVP1_SCHJY); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005524,GO:0008270 NbS00012670g0012.1 protein AED:0.49 eAED:0.49 QI:0|0.5|0|0.66|0|0.33|3|0|242; (*GB) gi|259414645|gb|ACW82414.1| (e_value=9e-99) putative NADH dehydrogenase [Olea europaea];; (*SWP) sp|A9PJQ8|NDHM_POPJC (e_value=2e-99) NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1;; (*TAIR) AT4G37925.1 (e_value=9e-79) | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex | chr4:17830748-17831485 REVERSE LENGTH=217;; (*ITAG) Solyc04g057980.2.1 (e_value=8e-122) genomic_reference:SL2.40ch04 gene_region:54247194-54248180 transcript_region:SL2.40ch04:54247194..54248180- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit M (AHRD V1 *-*- D8G7H3_9CYAN); contains Interpro domain(s) IPR018922 NAD(P)H-quinone oxidoreductase subunit M "; GO:0055114 NbS00012670g0009.1 protein AED:0.45 eAED:0.50 QI:0|0.33|0|1|0|0.25|4|0|436; (*ITAG) Solyc04g057970.2.1 (e_value=2e-106) genomic_reference:SL2.40ch04 gene_region:54241011-54245854 transcript_region:SL2.40ch04:54241011..54245854+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014738g0003.1 protein AED:0.18 eAED:0.18 QI:18|1|1|1|1|1|2|259|152 NbS00014738g0004.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|0|0|2|0|104 NbS00041311g0001.1 protein AED:0.35 eAED:0.35 QI:2|-1|0|1|-1|1|1|46|47 NbS00025273g0005.1 protein AED:0.14 eAED:0.14 QI:148|1|1|1|1|1|9|264|588; (*GB) gi|116563473|gb|ABJ99758.1| (e_value=0.0) phospholipase C [Nicotiana tabacum];; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=0.0) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2 PE=1 SV=1;; (*TAIR) AT3G08510.2 (e_value=0.0) | Symbols: ATPLC2, PLC2 | phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=581;; (*ITAG) Solyc05g052760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62099696-62104689 transcript_region:SL2.40ch05:62099696..62104689+ go_terms:GO:0023034,GO:0006629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00026025g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.83|1|1|1|6|0|609; (*GB) gi|350534856|ref|NP_001234163.1| (e_value=0.0) auxin efflux facilitator SlPIN1 [Solanum lycopersicum];; (*SWP) sp|Q5SMQ9|PIN1_ORYSJ (e_value=0.0) Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1;; (*TAIR) AT1G73590.1 (e_value=0.0) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622;; (*ITAG) Solyc03g118740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61621010-61624524 transcript_region:SL2.40ch03:61621010..61624524+ go_terms:GO:0005215 functional_description:"Auxin efflux carrier (AHRD V1 ***- Q71T12_MOMCH); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0005215 NbS00026025g0008.1 protein AED:0.15 eAED:0.15 QI:398|1|0.91|1|0.81|0.91|12|0|491; (*GB) gi|350537433|ref|NP_001234549.1| (e_value=0.0) phosphoethanolamine N-methyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9M571|PEAMT_SPIOL (e_value=0.0) Phosphoethanolamine N-methyltransferase OS=Spinacia oleracea GN=PEAMT PE=1 SV=1;; (*TAIR) AT3G18000.1 (e_value=0.0) | Symbols: NMT1, XPL1, PEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491;; (*ITAG) Solyc03g118750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61633672-61639223 transcript_region:SL2.40ch03:61633672..61639223+ go_terms:GO:0000234 functional_description:"Phosphoethanolamine N-methyltransferase (AHRD V1 **** Q9AXH3_SOLLC); contains Interpro domain(s) IPR000896 Hemocyanin, copper-containing "; GO:0000234 NbS00023215g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.9|1|0.66|0.9|10|112|513; (*GB) gi|71043507|dbj|BAE16174.1| (e_value=0.0) polyamine oxidase [Nicotiana tabacum];; (*SWP) sp|Q9FNA2|PAO1_ARATH (e_value=0.0) Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1;; (*TAIR) AT5G13700.1 (e_value=0.0) | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472;; (*ITAG) Solyc01g087590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74304516-74310120 transcript_region:SL2.40ch01:74304516..74310120+ go_terms:GO:0046592,GO:0050660 functional_description:"Polyamine oxidase (AHRD V1 **** Q4H439_TOBAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0050660 NbS00008911g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|595; (*GB) gi|297745558|emb|CBI40723.3| (e_value=7e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YRM6|Y8219_ORYSJ (e_value=2e-89) UPF0392 protein Os08g0121900 OS=Oryza sativa subsp. japonica GN=Os08g0121900 PE=2 SV=1;; (*TAIR) AT4G37420.1 (e_value=2e-154) | Symbols: | Domain of unknown function (DUF23) | chr4:17593123-17594889 FORWARD LENGTH=588;; (*ITAG) Solyc12g094670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63172385-63173857 transcript_region:SL2.40ch12:63172385..63173857+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00008911g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.6|1|0.25|0.2|5|384|344; (*GB) gi|359491840|ref|XP_002271454.2| (e_value=2e-165) PREDICTED: serine/threonine-protein kinase PBS1-like [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=9e-139) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G20650.1 (e_value=1e-154) | Symbols: | Protein kinase superfamily protein | chr1:7158422-7160022 REVERSE LENGTH=381;; (*ITAG) Solyc12g094680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63176558-63179315 transcript_region:SL2.40ch12:63176558..63179315+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00008911g0002.1 protein AED:0.35 eAED:0.35 QI:460|0.77|0.7|1|1|1|10|229|443; (*GB) gi|327198779|emb|CBL43264.1| (e_value=0.0) glyceraldehyde-3-phosphate dehydrogenase [Solanum tuberosum];; (*SWP) sp|P12859|G3PB_PEA (e_value=0.0) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2;; (*TAIR) AT1G42970.1 (e_value=0.0) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc12g094640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63152981-63156043 transcript_region:SL2.40ch12:63152981..63156043+ go_terms:GO:0008152,GO:0055114 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 ***- B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00008911g0016.1 protein AED:0.42 eAED:0.42 QI:71|1|1|1|0.5|0.6|5|487|166; (*GB) gi|225438434|ref|XP_002276709.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100250729 [Vitis vinifera];; (*TAIR) AT1G42960.1 (e_value=7e-40) | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168;; (*ITAG) Solyc12g094630.1.1 (e_value=2e-75) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63147638-63151573 transcript_region:SL2.40ch12:63147638..63151573+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008525g0005.1 protein AED:0.22 eAED:0.24 QI:210|0.75|0.66|1|0.8|0.71|21|0|1310; (*GB) gi|359493878|ref|XP_002281921.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera];; (*SWP) sp|Q556Z3|TPC10_DICDI (e_value=6e-35) Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1;; (*TAIR) AT5G54440.1 (e_value=0.0) | Symbols: CLUB, AtTRS130 | CLUB | chr5:22100056-22107695 FORWARD LENGTH=1259;; (*ITAG) Solyc07g063440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63138711-63153358 transcript_region:SL2.40ch07:63138711..63153358+ functional_description:"Trafficking protein particle complex subunit 10 (AHRD V1 *--- D3BI54_POLPA)"; NbS00035767g0006.1 protein AED:0.01 eAED:0.01 QI:147|1|1|1|0.75|0.8|5|606|252; (*GB) gi|359477787|ref|XP_002282489.2| (e_value=5e-126) PREDICTED: putative uncharacterized hydrolase YOR131C [Vitis vinifera];; (*SWP) sp|Q12486|YOR31_YEAST (e_value=5e-29) Putative uncharacterized hydrolase YOR131C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR131C PE=1 SV=1;; (*TAIR) AT2G33255.1 (e_value=5e-127) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:14098795-14100358 FORWARD LENGTH=245;; (*ITAG) Solyc09g090750.2.1 (e_value=4e-158) genomic_reference:SL2.40ch09 gene_region:65532507-65537885 transcript_region:SL2.40ch09:65532507..65537885+ go_terms:GO:0005515,GO:0016791 functional_description:"HAD-superfamily hydrolase subfamily IA variant 1 (AHRD V1 ***- D2R0E7_PIRSD); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016791 NbS00035896g0001.1 protein AED:0.36 eAED:0.71 QI:205|0|0.5|1|0|0.5|2|0|82 NbS00010555g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.25|0|0.8|0.25|0.2|5|0|649; (*GB) gi|297738116|emb|CBI27317.3| (e_value=3e-72) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=1e-45) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=1e-46) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc05g012040.2.1 (e_value=2e-162) genomic_reference:SL2.40ch05 gene_region:5268986-5273711 transcript_region:SL2.40ch05:5268986..5273711+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00010555g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.66|1|0.8|0.83|6|0|175; (*GB) gi|58891107|gb|AAW83047.1| (e_value=1e-99) CRABS CLAW [Nicotiana tabacum];; (*SWP) sp|Q8L925|CRC_ARATH (e_value=3e-60) Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2;; (*TAIR) AT1G69180.1 (e_value=2e-61) | Symbols: CRC | Plant-specific transcription factor YABBY family protein | chr1:26007734-26008940 REVERSE LENGTH=181;; (*ITAG) Solyc05g012050.2.1 (e_value=3e-79) genomic_reference:SL2.40ch05 gene_region:5275528-5277367 transcript_region:SL2.40ch05:5275528..5277367- go_terms:GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 ***- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0003700 NbS00017918g0007.1 protein AED:0.27 eAED:0.27 QI:130|1|1|1|1|1|2|286|97; (*GB) gi|224145162|ref|XP_002325548.1| (e_value=4e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72020.1 (e_value=2e-31) | Symbols: | unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27109521-27110327 REVERSE LENGTH=97;; (*ITAG) Solyc06g065180.2.1 (e_value=1e-48) genomic_reference:SL2.40ch06 gene_region:37028954-37032350 transcript_region:SL2.40ch06:37028954..37032350+ functional_description:"SLL1 protein (AHRD V1 ***- A5X2S6_9ERIC)"; NbS00017918g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|320; (*GB) gi|350539617|ref|NP_001233966.1| (e_value=1e-154) TCP transcription factor 13 [Solanum lycopersicum];; (*SWP) sp|Q9LQF0|TCP23_ARATH (e_value=4e-58) Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1;; (*TAIR) AT1G35560.1 (e_value=3e-59) | Symbols: | TCP family transcription factor | chr1:13116099-13117124 REVERSE LENGTH=341;; (*ITAG) Solyc06g065190.1.1 (e_value=2e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37037216-37038193 transcript_region:SL2.40ch06:37037216..37038193- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00041703g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|140; (*ITAG) Solyc01g097570.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:80126257-80127038 transcript_region:SL2.40ch01:80126257..80127038+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041703g0002.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|112 NbS00041703g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|90 NbC26046735g0005.1 protein AED:0.03 eAED:0.03 QI:90|0.66|0.5|1|0.33|0.5|4|1992|84; (*GB) gi|357150036|ref|XP_003575318.1| (e_value=4e-34) PREDICTED: auxin-induced protein PCNT115-like [Brachypodium distachyon];; (*SWP) sp|P49249|IN22_MAIZE (e_value=1e-34) IN2-2 protein OS=Zea mays GN=IN2-2 PE=2 SV=1;; (*TAIR) AT1G60680.1 (e_value=2e-29) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22347824-22349236 REVERSE LENGTH=346;; (*ITAG) Solyc09g098090.2.1 (e_value=7e-50) genomic_reference:SL2.40ch09 gene_region:67260446-67263935 transcript_region:SL2.40ch09:67260446..67263935+ go_terms:GO:0004033 functional_description:"Aldo/keto reductase (AHRD V1 **** A2Q5A8_MEDTR); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbS00008559g0016.1 protein AED:0.77 eAED:0.77 QI:0|0|0.16|0.16|0.4|0.5|6|84|86 NbS00008559g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=6e-16) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc03g082790.2.1 (e_value=2e-19) genomic_reference:SL2.40ch03 gene_region:46195532-46196454 transcript_region:SL2.40ch03:46195532..46196454- functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbS00008559g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.8|1|0|0|5|1179|396; (*GB) gi|302143887|emb|CBI22748.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1D8|PP288_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1;; (*TAIR) AT3G60050.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:22180231-22181652 REVERSE LENGTH=473;; (*ITAG) Solyc01g097730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80213909-80217795 transcript_region:SL2.40ch01:80213909..80217795+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008559g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|735; (*GB) gi|359497798|ref|XP_003635646.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like, partial [Vitis vinifera];; (*SWP) sp|Q5G1T1|PP272_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1;; (*TAIR) AT3G49170.1 (e_value=0.0) | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18226954-18229600 REVERSE LENGTH=850;; (*ITAG) Solyc01g097670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80193056-80195803 transcript_region:SL2.40ch01:80193056..80195803+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008559g0017.1 protein AED:0.38 eAED:0.38 QI:0|1|0.87|1|0.85|0.87|8|0|246; (*GB) gi|225451281|ref|XP_002277809.1| (e_value=3e-158) PREDICTED: tetratricopeptide repeat protein 35 [Vitis vinifera];; (*SWP) sp|Q6INS3|TC35A_XENLA (e_value=4e-54) Tetratricopeptide repeat protein 35-A OS=Xenopus laevis GN=ttc35-a PE=2 SV=1;; (*TAIR) AT3G04830.1 (e_value=3e-154) | Symbols: | Protein prenylyltransferase superfamily protein | chr3:1326289-1329132 FORWARD LENGTH=303;; (*ITAG) Solyc01g097740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80219250-80225601 transcript_region:SL2.40ch01:80219250..80225601+ go_terms:GO:0005515 functional_description:"Tetratricopeptide repeat protein KIAA0103 (AHRD V1 ***- B6TNR5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00019958g0001.1 protein AED:0.23 eAED:0.50 QI:964|0.5|0.66|1|0|0.33|3|0|206 NbS00032288g0018.1 protein AED:0.05 eAED:0.05 QI:838|0.83|0.71|1|0.5|0.28|7|0|343; (*GB) gi|224074919|ref|XP_002304491.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT1G63470.1 (e_value=3e-52) | Symbols: | AT hook motif DNA-binding family protein | chr1:23536831-23538863 REVERSE LENGTH=378;; (*ITAG) Solyc08g008030.2.1 (e_value=1e-121) genomic_reference:SL2.40ch08 gene_region:2522295-2528486 transcript_region:SL2.40ch08:2522295..2528486- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00032288g0016.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.25|1|1|4|0|198; (*GB) gi|255537543|ref|XP_002509838.1| (e_value=2e-52) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SUS5|RHA1B_ARATH (e_value=8e-22) E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1;; (*TAIR) AT3G61460.1 (e_value=5e-50) | Symbols: BRH1 | brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170;; (*ITAG) Solyc08g081370.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61596346-61596843 transcript_region:SL2.40ch08:61596346..61596843- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q30D22_PONTR); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00032288g0022.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|0.66|0.75|4|0|261; (*GB) gi|17017255|gb|AAL33585.1|AF440271_1 (e_value=0.0) aquaporin [Nicotiana tabacum];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=5e-175) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=5e-161) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc08g008050.2.1 (e_value=5e-178) genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00032288g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.66|0.83|0.8|0.83|6|432|259; (*GB) gi|224132294|ref|XP_002328233.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9BRU9|UTP23_HUMAN (e_value=2e-19) rRNA-processing protein UTP23 homolog OS=Homo sapiens GN=UTP23 PE=2 SV=2;; (*TAIR) AT2G34570.1 (e_value=5e-65) | Symbols: MEE21 | PIN domain-like family protein | chr2:14563048-14564681 REVERSE LENGTH=281;; (*ITAG) Solyc08g008040.2.1 (e_value=8e-70) genomic_reference:SL2.40ch08 gene_region:2534141-2538271 transcript_region:SL2.40ch08:2534141..2538271+ functional_description:"rRNA-processing protein UTP23 homolog (AHRD V1 *--- D3PH70_9MAXI); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; NbS00032288g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|484; (*GB) gi|359474216|ref|XP_002272722.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264973 [Vitis vinifera];; (*TAIR) AT4G11610.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00032288g0025.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|358; (*GB) gi|224058545|ref|XP_002299538.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DN14|MCTP1_HUMAN (e_value=1e-12) Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2;; (*TAIR) AT4G11610.1 (e_value=2e-173) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00032288g0024.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|163; (*GB) gi|359474216|ref|XP_002272722.2| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100264973 [Vitis vinifera];; (*TAIR) AT4G11610.1 (e_value=1e-53) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00025445g0003.1 protein AED:0.11 eAED:0.11 QI:117|0.85|1|1|1|1|8|75|331; (*GB) gi|294653508|gb|ADF28628.1| (e_value=3e-146) beta-carotene hydroxylase 2 [Solanum tuberosum];; (*SWP) sp|O49814|BCH2_CAPAN (e_value=3e-133) Beta-carotene hydroxylase 2, chloroplastic (Fragment) OS=Capsicum annuum GN=CA2 PE=2 SV=1;; (*TAIR) AT5G52570.1 (e_value=7e-119) | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene hydroxylase 2 | chr5:21334911-21336887 REVERSE LENGTH=303;; (*ITAG) Solyc03g007960.2.1 (e_value=9e-148) genomic_reference:SL2.40ch03 gene_region:2447872-2450289 transcript_region:SL2.40ch03:2447872..2450289+ go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 2"; GO:0010291 NbS00015395g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|470; (*GB) gi|359479301|ref|XP_002266911.2| (e_value=0.0) PREDICTED: scarecrow-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q9LPR8|SCL3_ARATH (e_value=0.0) Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1;; (*TAIR) AT1G50420.1 (e_value=0.0) | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482;; (*ITAG) Solyc01g008910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2935721-2937612 transcript_region:SL2.40ch01:2935721..2937612+ go_terms:GO:0003700 functional_description:"Scarecrow transcription factor family protein (AHRD V1 **-* D7MIP9_ARALY); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00015395g0012.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.77|0.8|10|441|326; (*GB) gi|224054522|ref|XP_002298302.1| (e_value=4e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|O80934|Y2766_ARATH (e_value=5e-18) Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2;; (*TAIR) AT4G31530.1 (e_value=1e-135) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:15282281-15284064 FORWARD LENGTH=324;; (*ITAG) Solyc01g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2941572-2947566 transcript_region:SL2.40ch01:2941572..2947566+ go_terms:GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 **-- Q10L97_ORYSJ); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0008152 NbS00015395g0013.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|0|0.5|2|0|409; (*GB) gi|47824946|gb|AAT38720.1| (e_value=6e-72) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=6e-36) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=5e-37) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc09g091710.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00015395g0011.1 protein AED:0.22 eAED:0.24 QI:201|0.85|0.75|1|0.57|0.75|8|226|362; (*GB) gi|350540104|ref|NP_001234133.1| (e_value=0.0) phytochromobilin synthase [Solanum lycopersicum];; (*SWP) sp|Q9SR43|PFBS_ARATH (e_value=2e-125) Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1;; (*TAIR) AT3G09150.2 (e_value=2e-126) | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) | chr3:2803665-2805333 FORWARD LENGTH=329;; (*ITAG) Solyc01g008930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2948574-2955890 transcript_region:SL2.40ch01:2948574..2955890- go_terms:GO:0050619 functional_description:"Phycoerythrobilin ferredoxin oxidoreductase (AHRD V1 **** Q6E5A3_MAIZE); contains Interpro domain(s) IPR009249 Ferredoxin-dependent bilin reductase "; GO:0050619 NbS00061824g0003.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|1|0.8|5|0|228; (*GB) gi|60459387|gb|AAX20039.1| (e_value=2e-129) tyrosine specific protein phosphatase family protein [Capsicum annuum];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=7e-101) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT1G05000.1 (e_value=5e-102) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr1:1425660-1428393 FORWARD LENGTH=215;; (*ITAG) Solyc07g049560.2.1 (e_value=7e-135) genomic_reference:SL2.40ch07 gene_region:57175525-57179154 transcript_region:SL2.40ch07:57175525..57179154- go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00035691g0002.1 protein AED:0.58 eAED:0.62 QI:0|0|0|0.4|1|1|5|0|476; (*ITAG) Solyc04g018260.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11187511-11188311 transcript_region:SL2.40ch04:11187511..11188311+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035691g0008.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|85 NbS00035691g0007.1 protein AED:0.68 eAED:0.76 QI:0|0|0|0.33|1|1|3|0|317 NbS00012507g0003.1 protein AED:0.09 eAED:0.15 QI:0|0|0.33|1|1|1|3|0|548; (*GB) gi|225446357|ref|XP_002272844.1| (e_value=2e-87) PREDICTED: uncharacterized protein LOC100264321 isoform 1 [Vitis vinifera];; (*TAIR) AT4G28300.1 (e_value=4e-73) | Symbols: | Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496;; (*ITAG) Solyc07g053990.2.1 (e_value=1e-113) genomic_reference:SL2.40ch07 gene_region:59725634-59729577 transcript_region:SL2.40ch07:59725634..59729577- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00018879g0018.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.75|0.6|5|324|326; (*GB) gi|4927284|gb|AAD33072.1|AF149251_1 (e_value=0.0) secretory peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9SB81|PER42_ARATH (e_value=0.0) Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2;; (*TAIR) AT4G21960.1 (e_value=0.0) | Symbols: PRXR1 | Peroxidase superfamily protein | chr4:11646613-11648312 REVERSE LENGTH=330;; (*ITAG) Solyc02g080530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39317455-39319147 transcript_region:SL2.40ch02:39317455..39319147- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** C7DYB2_9ERIC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00018879g0005.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|359483369|ref|XP_003632945.1| (e_value=5e-66) PREDICTED: uncharacterized protein LOC100855186 [Vitis vinifera];; (*TAIR) AT1G11700.1 (e_value=8e-43) | Symbols: | Protein of unknown function, DUF584 | chr1:3945852-3946457 FORWARD LENGTH=201;; (*ITAG) Solyc02g080510.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39294750-39295370 transcript_region:SL2.40ch02:39294750..39295370- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-*- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00018879g0024.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.14|1|0.33|0.42|7|0|368; (*GB) gi|126363776|dbj|BAF47752.1| (e_value=0.0) multi antimicrobial extrusion family protein [Nicotiana tabacum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-90) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G61890.1 (e_value=9e-162) | Symbols: | MATE efflux family protein | chr1:22868103-22871163 REVERSE LENGTH=501;; (*ITAG) Solyc02g080480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39263626-39266662 transcript_region:SL2.40ch02:39263626..39266662- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_EDWI9); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00018879g0023.1 protein AED:0.23 eAED:0.25 QI:0|0.5|0.2|1|0.75|0.8|5|47|668; (*GB) gi|359483440|ref|XP_002268763.2| (e_value=1e-109) PREDICTED: uncharacterized protein LOC100245273 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=3e-12) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=8e-83) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc02g080520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39308828-39311483 transcript_region:SL2.40ch02:39308828..39311483- functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00018879g0027.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|293; (*GB) gi|225456270|ref|XP_002283518.1| (e_value=6e-114) PREDICTED: nucleolar protein 56-like [Vitis vinifera];; (*SWP) sp|Q95K50|NOP56_MACFA (e_value=1e-84) Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1;; (*TAIR) AT3G12860.1 (e_value=9e-109) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:4091678-4093921 FORWARD LENGTH=499;; (*ITAG) Solyc01g100570.2.1 (e_value=3e-137) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbS00018879g0003.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|224136093|ref|XP_002322238.1| (e_value=3e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|O94514|NOP56_SCHPO (e_value=2e-61) Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=2 SV=1;; (*TAIR) AT1G56110.1 (e_value=6e-101) | Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522;; (*ITAG) Solyc01g100570.2.1 (e_value=5e-113) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbS00018879g0025.1 protein AED:0.44 eAED:0.68 QI:0|0|0|1|0|0|3|0|115; (*GB) gi|126363774|dbj|BAF47751.1| (e_value=1e-28) multi antimicrobial extrusion family protein [Nicotiana tabacum];; (*TAIR) AT3G21690.1 (e_value=1e-24) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g080480.2.1 (e_value=7e-29) genomic_reference:SL2.40ch02 gene_region:39263626-39266662 transcript_region:SL2.40ch02:39263626..39266662- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_EDWI9); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00010221g0003.1 protein AED:0.09 eAED:0.09 QI:18|1|0.5|1|1|1|2|0|80; (*GB) gi|356506339|ref|XP_003521942.1| (e_value=4e-26) PREDICTED: serine/threonine-protein kinase Aurora-3-like [Glycine max];; (*SWP) sp|O64629|AUR3_ARATH (e_value=3e-26) Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1;; (*TAIR) AT2G45490.1 (e_value=2e-27) | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747658-18749044 REVERSE LENGTH=288;; (*ITAG) Solyc04g009330.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:2772793-2776023 transcript_region:SL2.40ch04:2772793..2776023+ go_terms:GO:0004713 functional_description:"Serine/threonine-protein kinase 12 (AHRD V1 **** B6SI45_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004713 NbS00010221g0001.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|63 NbS00040668g0004.1 protein AED:0.33 eAED:0.33 QI:28|1|0.75|1|1|1|4|0|170; (*GB) gi|10799832|emb|CAC12883.1| (e_value=7e-110) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42794|RL112_ARATH (e_value=2e-108) 60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2;; (*TAIR) AT5G45775.2 (e_value=1e-109) | Symbols: | Ribosomal L5P family protein | chr5:18565281-18566496 REVERSE LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=9e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00028389g0020.1 protein AED:0.19 eAED:0.24 QI:57|0.16|0.28|0.85|0.66|0.57|7|0|696; (*GB) gi|225442541|ref|XP_002284183.1| (e_value=0.0) PREDICTED: VHS domain-containing protein At3g16270 [Vitis vinifera];; (*SWP) sp|Q9C5H4|Y3627_ARATH (e_value=9e-173) VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1;; (*TAIR) AT3G16270.1 (e_value=7e-174) | Symbols: | ENTH/VHS family protein | chr3:5513701-5516540 FORWARD LENGTH=690;; (*ITAG) Solyc04g047770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:36799316-36804243 transcript_region:SL2.40ch04:36799316..36804243+ go_terms:GO:0006886 functional_description:"VHS domain-containing protein At3g16270 (AHRD V1 **-- Y3627_ARATH); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886 NbS00028389g0022.1 protein AED:0.24 eAED:0.27 QI:0|0.72|0.66|1|0.54|0.66|12|384|838; (*GB) gi|255558761|ref|XP_002520404.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q7LBC6|KDM3B_HUMAN (e_value=3e-35) Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2;; (*TAIR) AT4G00990.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr4:427035-431535 FORWARD LENGTH=840;; (*ITAG) Solyc04g049140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38967716-38986680 transcript_region:SL2.40ch04:38967716..38986680- go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00028389g0002.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|276 NbS00028389g0023.1 protein AED:0.37 eAED:0.38 QI:0|0.75|0.55|1|0.87|0.77|9|0|480; (*GB) gi|15147828|emb|CAC50871.1| (e_value=0.0) ferrochelatase [Nicotiana tabacum];; (*SWP) sp|O04921|HEMH2_ARATH (e_value=0.0) Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1;; (*TAIR) AT2G30390.1 (e_value=0.0) | Symbols: FC2, FC-II, ATFC-II | ferrochelatase 2 | chr2:12951242-12953985 REVERSE LENGTH=512;; (*ITAG) Solyc05g018650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22680872-22699780 transcript_region:SL2.40ch05:22680872..22699780- go_terms:GO:0004325 functional_description:"Ferrochelatase (AHRD V1 **** O64391_SOLTU); contains Interpro domain(s) IPR001015 Ferrochelatase "; GO:0004325 NbS00003951g0003.1 protein AED:0.38 eAED:0.39 QI:140|0.5|0.66|1|0|0.33|3|0|102; (*GB) gi|224107595|ref|XP_002314530.1| (e_value=1e-45) f-box family protein [Populus trichocarpa];; (*ITAG) Solyc09g091160.1.1 (e_value=5e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:65841807-65842115 transcript_region:SL2.40ch09:65841807..65842115+ functional_description:"F-box family protein (AHRD V1 ***- B9HSY9_POPTR)"; NbS00003951g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|141; (*ITAG) Solyc03g025660.1.1 (e_value=3e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:7476368-7476793 transcript_region:SL2.40ch03:7476368..7476793+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 ***- C7FE91_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00003951g0018.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|0.66|3|0|142; (*GB) gi|388491752|gb|AFK33942.1| (e_value=4e-88) unknown [Medicago truncatula];; (*SWP) sp|O49313|NDADB_ARATH (e_value=4e-88) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1;; (*TAIR) AT2G33220.1 (e_value=3e-89) | Symbols: | GRIM-19 protein | chr2:14078974-14079929 FORWARD LENGTH=143;; (*ITAG) Solyc09g091170.2.1 (e_value=2e-100) genomic_reference:SL2.40ch09 gene_region:65842513-65846890 transcript_region:SL2.40ch09:65842513..65846890- go_terms:GO:0008137 functional_description:"NADH dehydrogenase 1 alpha subcomplex subunit 13 (AHRD V1 **** B5X9S0_SALSA); contains Interpro domain(s) IPR009346 GRIM-19 "; GO:0008137 NbS00003951g0013.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|214; (*GB) gi|255554288|ref|XP_002518184.1| (e_value=8e-82) glutathione s-transferase, putative [Ricinus communis];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=1e-51) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-47) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g091140.2.1 (e_value=3e-123) genomic_reference:SL2.40ch09 gene_region:65834249-65836084 transcript_region:SL2.40ch09:65834249..65836084- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364,GO:0043295 NbS00003951g0016.1 protein AED:0.09 eAED:0.60 QI:0|0|0|1|0|0|2|0|88; (*ITAG) Solyc09g091130.2.1 (e_value=3e-14) genomic_reference:SL2.40ch09 gene_region:65832583-65833588 transcript_region:SL2.40ch09:65832583..65833588- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00044798g0001.1 protein AED:0.41 eAED:0.43 QI:0|0.66|0.5|1|1|1|4|432|147; (*GB) gi|356537146|ref|XP_003537091.1| (e_value=1e-91) PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like [Glycine max];; (*SWP) sp|Q9SVD7|UEV1D_ARATH (e_value=1e-89) Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1;; (*TAIR) AT3G52560.1 (e_value=8e-91) | Symbols: UEV1D-4, MMZ4, UEV1D | ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=146;; (*ITAG) Solyc10g083120.1.1 (e_value=6e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62310434-62314944 transcript_region:SL2.40ch10:62310434..62314944- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme family protein-like (AHRD V1 ***- Q3HVN0_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00013327g0011.1 protein AED:0.32 eAED:0.34 QI:0|0.75|0.76|1|0.83|0.84|13|0|421; (*GB) gi|121501708|gb|ABM55249.1| (e_value=0.0) casein kinase [Beta vulgaris];; (*SWP) sp|P42158|KC1D_ARATH (e_value=2e-176) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=2e-178) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc07g040720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46775853-46782305 transcript_region:SL2.40ch07:46775853..46782305+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00013327g0008.1 protein AED:0.11 eAED:0.10 QI:504|0.83|0.84|1|0.91|0.92|13|452|555; (*GB) gi|6625653|gb|AAF19345.1|AF129003_1 (e_value=0.0) diacylglycerol acylCoA acyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SLD2|DGAT1_ARATH (e_value=0.0) Diacylglycerol O-acyltransferase 1 OS=Arabidopsis thaliana GN=DGAT1 PE=1 SV=2;; (*TAIR) AT2G19450.1 (e_value=0.0) | Symbols: TAG1, AS11, ABX45, DGAT1, RDS1, ATDGAT | membrane bound O-acyl transferase (MBOAT) family protein | chr2:8426436-8429455 FORWARD LENGTH=520;; (*ITAG) Solyc07g040740.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46788031-46800500 transcript_region:SL2.40ch07:46788031..46800500- go_terms:GO:0004144 functional_description:"Diacylglycerol acyltransferase (AHRD V1 **** Q9FUL6_PERFR); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0004144 NbS00013327g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|388499238|gb|AFK37685.1| (e_value=4e-25) unknown [Medicago truncatula];; (*TAIR) AT2G19460.1 (e_value=8e-18) | Symbols: | Protein of unknown function (DUF3511) | chr2:8431581-8431931 FORWARD LENGTH=116;; (*ITAG) Solyc07g040730.1.1 (e_value=1e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:46786386-46786763 transcript_region:SL2.40ch07:46786386..46786763- functional_description:"Unknown Protein (AHRD V1)"; NbS00013666g0010.1 protein AED:0.13 eAED:0.13 QI:707|0.75|0.6|1|0.5|0.4|5|0|313; (*GB) gi|147770642|emb|CAN73408.1| (e_value=2e-132) hypothetical protein VITISV_024373 [Vitis vinifera];; (*SWP) sp|P0CI03|PTR28_ARATH (e_value=7e-62) Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1;; (*TAIR) AT2G37900.1 (e_value=5e-63) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084950.1.1 (e_value=5e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00013666g0001.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.6|1|1|5|0|358; (*GB) gi|255586949|ref|XP_002534074.1| (e_value=2e-111) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9M331|PTR45_ARATH (e_value=3e-96) Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2;; (*TAIR) AT3G53960.1 (e_value=3e-97) | Symbols: | Major facilitator superfamily protein | chr3:19978306-19980886 REVERSE LENGTH=602;; (*ITAG) Solyc10g084950.1.1 (e_value=9e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00012513g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.89|0.85|0.95|0.89|0.8|20|421|824; (*GB) gi|225435331|ref|XP_002285194.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Vitis vinifera];; (*SWP) sp|Q5H9R7|PP6R3_HUMAN (e_value=1e-59) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens GN=PPP6R3 PE=1 SV=2;; (*TAIR) AT1G07990.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr1:2477413-2482898 FORWARD LENGTH=802;; (*ITAG) Solyc11g069490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51168203-51179394 transcript_region:SL2.40ch11:51168203..51179394+ functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 *-*- SAPS3_CHICK); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00058212g0001.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|0|2|0|182; (*GB) gi|225466227|ref|XP_002267333.1| (e_value=5e-73) PREDICTED: uncharacterized protein LOC100258199 [Vitis vinifera];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=3e-43) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT1G65910.1 (e_value=2e-60) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g036430.1.1 (e_value=3e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21468369-21472137 transcript_region:SL2.40ch02:21468369..21472137+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00021688g0002.1 protein AED:0.30 eAED:0.36 QI:0|0.4|0.16|1|1|1|6|294|169; (*GB) gi|242056727|ref|XP_002457509.1| (e_value=2e-39) hypothetical protein SORBIDRAFT_03g008520 [Sorghum bicolor];; (*TAIR) AT5G40270.1 (e_value=3e-32) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc02g086900.2.1 (e_value=4e-46) genomic_reference:SL2.40ch02 gene_region:44070513-44077345 transcript_region:SL2.40ch02:44070513..44077345+ go_terms:GO:0003824 functional_description:"Metal-dependent phosphohydrolase HD domain-containing protein (AHRD V1 **-- D7MJA0_ARALY); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00042895g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|481; (*GB) gi|41059853|gb|AAR99391.1| (e_value=0.0) ACC synthase ACS2 [Nicotiana attenuata];; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=0.0) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc08g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61733933-61736466 transcript_region:SL2.40ch08:61733933..61736466+ go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96580_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00036944g0003.1 protein AED:0.13 eAED:0.14 QI:0|1|0.6|1|0.5|0.6|5|0|176; (*GB) gi|357493921|ref|XP_003617249.1| (e_value=7e-104) Rho GTPase-activating protein [Medicago truncatula];; (*TAIR) AT5G19390.4 (e_value=1e-93) | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6537143 FORWARD LENGTH=714;; (*ITAG) Solyc01g008770.2.1 (e_value=2e-108) genomic_reference:SL2.40ch01 gene_region:2797441-2815705 transcript_region:SL2.40ch01:2797441..2815705+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *--* Q6P4P5_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00020955g0111.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|138|84 NbS00020955g0102.1 protein AED:0.21 eAED:0.22 QI:0|0.66|0.4|1|1|1|10|0|926 NbS00020955g0108.1 protein AED:0.89 eAED:0.91 QI:0|0|0|0.66|1|1|3|0|128 NbS00011051g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.85|1|1|1|7|0|714; (*GB) gi|225438325|ref|XP_002272045.1| (e_value=0.0) PREDICTED: diacylglycerol kinase 1-like [Vitis vinifera];; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G63770.1 (e_value=0.0) | Symbols: ATDGK2, DGK2 | diacylglycerol kinase 2 | chr5:25519293-25522404 FORWARD LENGTH=712;; (*ITAG) Solyc05g056420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64867635-64872244 transcript_region:SL2.40ch05:64867635..64872244- go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 1 (AHRD V1 **** A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0004143 NbS00050502g0002.1 protein AED:0.25 eAED:0.25 QI:209|1|0.75|1|1|1|4|0|79; (*GB) gi|351725601|ref|NP_001237354.1| (e_value=9e-46) uncharacterized protein LOC100527017 [Glycine max];; (*SWP) sp|A4K526|CQ061_BUFBG (e_value=2e-14) UPF0451 protein C17orf61 homolog OS=Bufo bufo gargarizans PE=3 SV=1;; (*TAIR) AT2G04900.1 (e_value=3e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | chr2:1722500-1723606 FORWARD LENGTH=128;; (*ITAG) Solyc07g047700.2.1 (e_value=2e-46) genomic_reference:SL2.40ch07 gene_region:56251359-56254694 transcript_region:SL2.40ch07:56251359..56254694+ functional_description:"UPF0382 membrane protein SE_0353 (AHRD V1 ***- C3KHX6_ANOFI); contains Interpro domain(s) IPR006696 Protein of unknown function DUF423 "; NbS00050729g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|222; (*GB) gi|162464180|ref|NP_001105391.1| (e_value=3e-93) 40S ribosomal protein S8 [Zea mays];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=9e-95) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=2e-85) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=4e-88) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00054470g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|297738085|emb|CBI27286.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZD4|PPR59_ARATH (e_value=4e-179) Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1;; (*TAIR) AT1G26500.1 (e_value=3e-180) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:9158380-9159897 FORWARD LENGTH=505;; (*ITAG) Solyc01g097130.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054470g0007.1 protein AED:0.16 eAED:0.16 QI:647|0.66|0.7|1|0.44|0.4|10|0|582; (*GB) gi|359472802|ref|XP_002271275.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT5-like [Vitis vinifera];; (*SWP) sp|Q3EC77|PMT5_ARATH (e_value=0.0) Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2;; (*TAIR) AT2G03480.2 (e_value=0.0) | Symbols: QUL2 | QUASIMODO2 LIKE 2 | chr2:1051509-1054090 FORWARD LENGTH=595;; (*ITAG) Solyc04g005430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:296800-302613 transcript_region:SL2.40ch04:296800..302613- go_terms:GO:0016020 functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00011509g0018.1 protein AED:0.16 eAED:0.16 QI:0|0.77|0.6|1|0.88|0.7|10|34|845; (*GB) gi|302143311|emb|CBI21872.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q99575|POP1_HUMAN (e_value=5e-14) Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2;; (*TAIR) AT2G47300.2 (e_value=0.0) | Symbols: | ribonuclease Ps | chr2:19418733-19422076 FORWARD LENGTH=826;; (*ITAG) Solyc11g007800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2031760-2038024 transcript_region:SL2.40ch11:2031760..2038024- go_terms:GO:0006396,GO:0001682 functional_description:"Ribonuclease P/MRP protein subunit (AHRD V1 *--- A8NQR7_COPC7); contains Interpro domain(s) IPR009723 Ribonuclease P/MRP, POP1 "; GO:0006396,GO:0001682 NbS00011509g0014.1 protein AED:0.11 eAED:0.25 QI:0|0|0|0.8|0|0.4|5|0|276; (*GB) gi|147773742|emb|CAN74190.1| (e_value=8e-85) hypothetical protein VITISV_036142 [Vitis vinifera];; (*SWP) sp|Q2S415|SYL_SALRD (e_value=8e-38) Leucine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=leuS PE=3 SV=1;; (*TAIR) AT4G04350.1 (e_value=8e-77) | Symbols: EMB2369 | tRNA synthetase class I (I, L, M and V) family protein | chr4:2128129-2133030 FORWARD LENGTH=973;; (*ITAG) Solyc02g080980.2.1 (e_value=1e-108) genomic_reference:SL2.40ch02 gene_region:39624700-39628614 transcript_region:SL2.40ch02:39624700..39628614- go_terms:GO:0005737 functional_description:"Leucyl-tRNA synthetase (AHRD V1 ***- D0MFP2_RHOM4); contains Interpro domain(s) IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial "; GO:0005737 NbS00011509g0011.1 protein AED:0.27 eAED:0.29 QI:39|1|0.90|1|0.8|0.81|11|294|385; (*GB) gi|225444319|ref|XP_002264137.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262450 [Vitis vinifera];; (*TAIR) AT1G62305.1 (e_value=7e-154) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:23026989-23029189 REVERSE LENGTH=378;; (*ITAG) Solyc02g080970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39615682-39621976 transcript_region:SL2.40ch02:39615682..39621976- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00011509g0016.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|0.5|0.66|3|0|165; (*GB) gi|302144099|emb|CBI23204.3| (e_value=5e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05070.1 (e_value=2e-64) | Symbols: | Protein of unknown function (DUF1068) | chr1:1457172-1458531 REVERSE LENGTH=184;; (*ITAG) Solyc07g049730.2.1 (e_value=3e-62) genomic_reference:SL2.40ch07 gene_region:57398397-57402361 transcript_region:SL2.40ch07:57398397..57402361- functional_description:"TO62-3 (Fragment) (AHRD V1 *-*- Q3LVL2_TAROF); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00011509g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|162568914|gb|ABY19383.1| (e_value=7e-97) putative chlorophyllase [Nicotiana tabacum];; (*SWP) sp|Q9M7I7|CLH2_ARATH (e_value=1e-60) Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1;; (*TAIR) AT5G43860.1 (e_value=9e-62) | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17630492-17632184 FORWARD LENGTH=318;; (*ITAG) Solyc06g053980.2.1 (e_value=6e-92) genomic_reference:SL2.40ch06 gene_region:33352567-33354119 transcript_region:SL2.40ch06:33352567..33354119- go_terms:GO:0047746 functional_description:"Chlorophyllase 2 (AHRD V1 **** Q8GTM3_BRAOL); contains Interpro domain(s) IPR010821 Chlorophyllase "; GO:0047746 NbS00011509g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|137; (*GB) gi|359483391|ref|XP_003632946.1| (e_value=3e-46) PREDICTED: pentatricopeptide repeat-containing protein At4g04370-like [Vitis vinifera];; (*SWP) sp|Q9XE98|PP303_ARATH (e_value=1e-36) Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1;; (*TAIR) AT4G04370.1 (e_value=9e-38) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2134060-2136249 REVERSE LENGTH=729;; (*ITAG) Solyc02g080950.1.1 (e_value=4e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39610383-39612644 transcript_region:SL2.40ch02:39610383..39612644+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003891g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|225437902|ref|XP_002266744.1| (e_value=4e-69) PREDICTED: glutathione transferase GST 23 isoform 1 [Vitis vinifera];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=8e-42) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=1e-38) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g091140.2.1 (e_value=2e-106) genomic_reference:SL2.40ch09 gene_region:65834249-65836084 transcript_region:SL2.40ch09:65834249..65836084- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364,GO:0043295 NbS00003891g0004.1 protein AED:0.37 eAED:0.53 QI:0|0|0|1|0|0|3|0|171; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00058995g0006.1 protein AED:0.13 eAED:0.13 QI:121|0.89|0.93|1|0.64|0.55|29|0|2096; (*GB) gi|359486090|ref|XP_002273874.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259948 [Vitis vinifera];; (*SWP) sp|P33144|BIMB_EMENI (e_value=8e-46) Separin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimB PE=3 SV=2;; (*TAIR) AT4G22970.1 (e_value=0.0) | Symbols: RSW4, AESP, ESP | homolog of separase | chr4:12033703-12043572 REVERSE LENGTH=2180;; (*ITAG) Solyc01g104490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84706633-84726678 transcript_region:SL2.40ch01:84706633..84726678+ go_terms:GO:0005634,GO:0005622 functional_description:"Separin (AHRD V1 *--- C5JQX2_AJEDS); contains Interpro domain(s) IPR005314 Peptidase C50, separase "; GO:0005634,GO:0005622 NbC25857777g0001.1 protein AED:0.17 eAED:0.63 QI:0|0|0|0.66|0|0|3|0|101; (*GB) gi|297742187|emb|CBI33974.3| (e_value=3e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G17140.1 (e_value=1e-16) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4216;; (*ITAG) Solyc08g077490.1.1 (e_value=7e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58609379-58620173 transcript_region:SL2.40ch08:58609379..58620173+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 ***- C1GW28_PARBA)"; NbS00016833g0002.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|1|1|2|0|158; (*GB) gi|298204733|emb|CBI25231.3| (e_value=2e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=3e-35) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-25) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=6e-36) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00015766g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.6|0.66|0.83|1|1|6|219|337; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=1e-179) PHB2 [Nicotiana benthamiana];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=2e-102) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=2e-159) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=2e-174) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00029100g0006.1 protein AED:0.13 eAED:0.18 QI:0|0.57|0.53|1|0.57|0.53|15|0|714; (*GB) gi|255572058|ref|XP_002526970.1| (e_value=4e-151) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q6F4F5|C724B_ORYSJ (e_value=8e-129) Cytochrome P450 724B1 OS=Oryza sativa subsp. japonica GN=CYP724B1 PE=1 SV=1;; (*TAIR) AT5G14400.1 (e_value=1e-117) | Symbols: CYP724A1 | cytochrome P450, family 724, subfamily A, polypeptide 1 | chr5:4644128-4646382 FORWARD LENGTH=367;; (*ITAG) Solyc02g093540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48953621-48955851 transcript_region:SL2.40ch02:48953621..48955851- go_terms:GO:0010012 functional_description:"Cytochrome P450"; GO:0010012 NbS00029100g0007.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|82754667|gb|ABB90081.1| (e_value=3e-29) Ycf2 [Solanum tuberosum];; (*SWP) sp|P61242|YCF2_SOLLC (e_value=1e-30) Protein ycf2 OS=Solanum lycopersicum GN=ycf2-A PE=2 SV=2;; (*ITAG) ATCG01280.1 (e_value=4e-28) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=6e-32) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00041084g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.63|0.6|0.95|0.89|0.95|20|463|951; (*GB) gi|225447723|ref|XP_002273150.1| (e_value=0.0) PREDICTED: staphylococcal nuclease domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q863B3|SND1_BOVIN (e_value=5e-117) Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1;; (*TAIR) AT5G07350.1 (e_value=0.0) | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protein 1 | chr5:2320344-2324892 REVERSE LENGTH=991;; (*ITAG) Solyc03g118020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61058382-61065557 transcript_region:SL2.40ch03:61058382..61065557- go_terms:GO:0003713,GO:0003723 functional_description:"Tudor / nuclease domain-containing protein (AHRD V1 ***- B6KG97_TOXGO); contains Interpro domain(s) IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN "; GO:0003713,GO:0003723 NbS00004777g0003.1 protein AED:0.31 eAED:0.52 QI:0|0|0|1|1|1|2|0|179; (*GB) gi|255579150|ref|XP_002530422.1| (e_value=9e-65) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=2e-60) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=2e-61) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc07g065710.2.1 (e_value=4e-78) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00004777g0011.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|646; (*GB) gi|350539361|ref|NP_001233877.1| (e_value=0.0) receptor-like protein kinase precursor [Solanum lycopersicum];; (*SWP) sp|C0LGU0|RLK_ARATH (e_value=1e-172) Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1;; (*TAIR) AT5G35390.1 (e_value=8e-174) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:13596918-13598976 FORWARD LENGTH=662;; (*ITAG) Solyc07g017230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6545383-6548769 transcript_region:SL2.40ch07:6545383..6548769+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00004777g0015.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|201; (*GB) gi|255566350|ref|XP_002524161.1| (e_value=2e-49) pseudouridylate synthase, putative [Ricinus communis];; (*TAIR) AT5G35400.1 (e_value=2e-45) | Symbols: | Pseudouridine synthase family protein | chr5:13599416-13602240 REVERSE LENGTH=420;; (*ITAG) Solyc07g017250.2.1 (e_value=3e-98) genomic_reference:SL2.40ch07 gene_region:6574501-6581341 transcript_region:SL2.40ch07:6574501..6581341- go_terms:GO:0009451 functional_description:"Pseudouridine synthase (AHRD V1 ***- B9N838_POPTR); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009451 NbS00004777g0016.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|119; (*GB) gi|255566350|ref|XP_002524161.1| (e_value=1e-40) pseudouridylate synthase, putative [Ricinus communis];; (*TAIR) AT5G35400.1 (e_value=4e-34) | Symbols: | Pseudouridine synthase family protein | chr5:13599416-13602240 REVERSE LENGTH=420;; (*ITAG) Solyc07g017260.2.1 (e_value=7e-59) genomic_reference:SL2.40ch07 gene_region:6596522-6603861 transcript_region:SL2.40ch07:6596522..6603861- go_terms:GO:0009451 functional_description:"tRNA pseudouridine synthase A (AHRD V1 *-*- B6XWT4_9BIFI); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009451 NbS00045604g0007.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|0|0.5|2|0|140; (*GB) gi|76496345|gb|ABA43690.1| (e_value=2e-54) ATPase subunit 4 [Brassica oleracea];; (*SWP) sp|P09003|MI25_TOBAC (e_value=3e-54) ATP synthase protein MI25 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) ATMG00640.1 (e_value=7e-55) | Symbols: ORF25 | hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 REVERSE LENGTH=192; NbS00045604g0008.1 protein AED:0.47 eAED:1.00 QI:0|0|0|0.66|0|0|3|0|111 NbS00039235g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0.5|0.33|3|0|354; (*GB) gi|359488130|ref|XP_002272596.2| (e_value=1e-127) PREDICTED: uncharacterized protein LOC100245087 [Vitis vinifera];; (*TAIR) AT5G17460.1 (e_value=2e-115) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5757582-5758867 REVERSE LENGTH=309;; (*ITAG) Solyc02g091320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47220962-47224447 transcript_region:SL2.40ch02:47220962..47224447- functional_description:"Unknown Protein (AHRD V1)"; NbS00039235g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|203; (*ITAG) Solyc02g091310.1.1 (e_value=2e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47219154-47220517 transcript_region:SL2.40ch02:47219154..47220517+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- B6TJ24_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00027763g0005.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|382; (*GB) gi|2326772|emb|CAA74847.1| (e_value=0.0) anther-specific protein [Nicotiana sylvestris];; (*SWP) sp|P08894|CHSA_PETHY (e_value=9e-90) Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1;; (*TAIR) AT1G02050.1 (e_value=0.0) | Symbols: LAP6 | Chalcone and stilbene synthase family protein | chr1:359164-360441 REVERSE LENGTH=395;; (*ITAG) Solyc01g090600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76030339-76031941 transcript_region:SL2.40ch01:76030339..76031941- go_terms:GO:0005576,GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase 3 protein (AHRD V1 ***- D5LQ17_BRARA); contains Interpro domain(s) IPR001099 Chalcone/stilbene synthase, N-terminal "; GO:0005576,GO:0008415,GO:0008152,GO:0009058 NbS00026566g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|15144509|gb|AAK84476.1| (e_value=2e-91) unknown [Solanum lycopersicum];; (*TAIR) AT4G38060.1 (e_value=8e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17874002-17874379 REVERSE LENGTH=125;; (*ITAG) Solyc11g010630.2.1 (e_value=2e-95) genomic_reference:SL2.40ch11 gene_region:3691539-3704230 transcript_region:SL2.40ch11:3691539..3704230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016490g0003.1 protein AED:0.12 eAED:0.12 QI:114|1|1|1|1|1|4|357|166; (*GB) gi|224101747|ref|XP_002312405.1| (e_value=4e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGG8|USPAL_ARATH (e_value=6e-16) Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2;; (*TAIR) AT1G68300.1 (e_value=2e-52) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:25598518-25599261 REVERSE LENGTH=160;; (*ITAG) Solyc01g100370.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:82186051-82188666 transcript_region:SL2.40ch01:82186051..82188666+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B6SNQ1_MAIZE); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbC23608205g0001.1 protein AED:0.08 eAED:0.08 QI:26|1|0.5|1|0|0|2|55|22 NbS00030592g0001.1 protein AED:0.56 eAED:0.56 QI:0|0.33|0|0.5|1|1|4|0|113; (*GB) gi|192911946|gb|ACF06581.1| (e_value=2e-74) translational initiation factor eIF1 [Elaeis guineensis];; (*SWP) sp|Q0D5W6|SUI1_ORYSJ (e_value=7e-74) Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1;; (*TAIR) AT4G27130.1 (e_value=1e-71) | Symbols: | Translation initiation factor SUI1 family protein | chr4:13604814-13605525 REVERSE LENGTH=113;; (*ITAG) Solyc07g064150.2.1 (e_value=1e-79) genomic_reference:SL2.40ch07 gene_region:63638382-63639895 transcript_region:SL2.40ch07:63638382..63639895+ go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00037024g0001.1 protein AED:0.16 eAED:0.17 QI:260|0|0.5|1|0|0.5|2|414|122; (*GB) gi|48526017|gb|AAT45202.1| (e_value=5e-58) lipid transfer protein 1 precursor [Nicotiana tabacum];; (*SWP) sp|P85894|LTP1_MORNI (e_value=2e-35) Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1;; (*TAIR) AT5G59310.1 (e_value=1e-31) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112;; (*ITAG) Solyc10g075100.1.1 (e_value=3e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58135114-58135744 transcript_region:SL2.40ch10:58135114..58135744- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q4A1N1_SOLLC); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen "; GO:0005516,GO:0005319 NbS00055336g0006.1 protein AED:0.31 eAED:0.32 QI:0|0.2|0.16|1|0|0|6|0|312; (*GB) gi|359472840|ref|XP_003631201.1| (e_value=1e-92) PREDICTED: cysteine-rich receptor-like protein kinase 10-like [Vitis vinifera];; (*SWP) sp|Q8GYA4|CRK10_ARATH (e_value=1e-50) Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3;; (*TAIR) AT1G70740.1 (e_value=1e-79) | Symbols: | Protein kinase superfamily protein | chr1:26673847-26675687 REVERSE LENGTH=425;; (*ITAG) Solyc04g007880.2.1 (e_value=1e-130) genomic_reference:SL2.40ch04 gene_region:1559971-1564010 transcript_region:SL2.40ch04:1559971..1564010+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6T9K5_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033732g0005.1 protein AED:0.20 eAED:0.20 QI:131|1|1|1|1|1|5|265|267; (*GB) gi|225452288|ref|XP_002271099.1| (e_value=1e-69) PREDICTED: uncharacterized protein LOC100262754 [Vitis vinifera];; (*TAIR) AT5G40570.1 (e_value=5e-54) | Symbols: | Surfeit locus protein 2 (SURF2) | chr5:16246798-16248251 FORWARD LENGTH=204;; (*ITAG) Solyc02g093510.2.1 (e_value=9e-103) genomic_reference:SL2.40ch02 gene_region:48932450-48935377 transcript_region:SL2.40ch02:48932450..48935377+ functional_description:"cDNA clone J023001A15 full insert sequence (AHRD V1 **-- B7EFQ5_ORYSJ); contains Interpro domain(s) IPR008833 Surfeit locus 2 "; NbS00036553g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|209; (*GB) gi|1546817|gb|AAB08428.1| (e_value=5e-97) patatin homolog [Nicotiana tabacum];; (*SWP) sp|Q3YJS9|PT3K1_SOLTU (e_value=7e-58) Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1;; (*TAIR) AT4G37070.2 (e_value=3e-45) | Symbols: PLP1, PLA IVA, AtPLAIVA | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | chr4:17464916-17467058 REVERSE LENGTH=414;; (*ITAG) Solyc08g006850.2.1 (e_value=3e-47) genomic_reference:SL2.40ch08 gene_region:1388591-1394719 transcript_region:SL2.40ch08:1388591..1394719+ go_terms:GO:0045735,GO:0004620 functional_description:"Patatin-like phospholipase family protein (AHRD V1 **** Q2QNW3_ORYSJ); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0004620 NbS00001346g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|118485312|gb|ABK94515.1| (e_value=1e-67) unknown [Populus trichocarpa];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=2e-47) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39030.1 (e_value=2e-63) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16298260-16298946 FORWARD LENGTH=228;; (*ITAG) Solyc08g068280.1.1 (e_value=4e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54579271-54580005 transcript_region:SL2.40ch08:54579271..54580005+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00029270g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|592; (*GB) gi|255581612|ref|XP_002531610.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|O54922|EXOC7_RAT (e_value=9e-12) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT2G39380.1 (e_value=0.0) | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70 family protein H2 | chr2:16447096-16449009 REVERSE LENGTH=637;; (*ITAG) Solyc05g054820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63783275-63785212 transcript_region:SL2.40ch05:63783275..63785212+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_CANGA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00029270g0007.1 protein AED:0.16 eAED:0.16 QI:93|1|1|1|0.66|0.75|4|407|123; (*GB) gi|350539055|ref|NP_001234116.1| (e_value=6e-77) similar to 60S ribosomal protein L35 [Solanum lycopersicum];; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=3e-75) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=2e-74) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=2e-80) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00029270g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|0.75|1|1|4|0|547; (*GB) gi|224100903|ref|XP_002312060.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=0.0) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G12360.1 (e_value=0.0) | Symbols: ITN1 | Ankyrin repeat family protein | chr3:3934146-3936495 FORWARD LENGTH=590;; (*ITAG) Solyc05g054830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63788805-63793279 transcript_region:SL2.40ch05:63788805..63793279+ go_terms:GO:0042803 functional_description:"Ankyrin-repeat protein (AHRD V1 **-- A2CIR5_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00032336g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0.8|0.83|6|0|179; (*GB) gi|356496332|ref|XP_003517022.1| (e_value=2e-96) PREDICTED: vesicle-associated protein 1-2-like [Glycine max];; (*SWP) sp|Q8VZ95|VAP11_ARATH (e_value=3e-86) Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1;; (*TAIR) AT3G60600.2 (e_value=8e-88) | Symbols: VAP27-1 | vesicle associated protein | chr3:22400537-22401650 FORWARD LENGTH=217;; (*ITAG) Solyc01g090910.2.1 (e_value=8e-115) genomic_reference:SL2.40ch01 gene_region:76377586-76382694 transcript_region:SL2.40ch01:76377586..76382694+ go_terms:GO:0046982 functional_description:"Vesicle-associated membrane protein-associated protein A (AHRD V1 ***- B6UGD8_MAIZE); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0046982 NbS00032336g0009.1 protein AED:0.16 eAED:0.16 QI:120|1|1|1|1|1|3|325|261; (*GB) gi|224136199|ref|XP_002326803.1| (e_value=1e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5PP62|SPX3_ARATH (e_value=6e-105) SPX domain-containing protein 3 OS=Arabidopsis thaliana GN=SPX3 PE=2 SV=1;; (*TAIR) AT2G45130.1 (e_value=5e-106) | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:18606489-18607754 FORWARD LENGTH=245;; (*ITAG) Solyc01g090890.2.1 (e_value=3e-161) genomic_reference:SL2.40ch01 gene_region:76355582-76358021 transcript_region:SL2.40ch01:76355582..76358021+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00032336g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|333; (*GB) gi|296089209|emb|CBI38912.3| (e_value=2e-125) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G60590.3 (e_value=2e-94) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:22398228-22399753 FORWARD LENGTH=404;; (*ITAG) Solyc01g090900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76374975-76376193 transcript_region:SL2.40ch01:76374975..76376193+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021696g0014.1 protein AED:0.17 eAED:0.22 QI:0|0.1|0|1|0|0.18|11|0|1200; (*GB) gi|297741837|emb|CBI33150.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=0.0) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT5G10370.1 (e_value=0.0) | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775;; (*ITAG) Solyc04g014210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4509385-4517601 transcript_region:SL2.40ch04:4509385..4517601+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 NbS00021696g0012.1 protein AED:0.06 eAED:0.09 QI:0|0.5|0|1|0.5|0.33|3|0|173; (*GB) gi|359485453|ref|XP_003633276.1| (e_value=5e-48) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|Q9FZ59|PEPR2_ARATH (e_value=8e-26) Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1;; (*TAIR) AT1G17750.1 (e_value=6e-27) | Symbols: PEPR2, AtPEPR2 | PEP1 receptor 2 | chr1:6106656-6110008 FORWARD LENGTH=1088;; (*ITAG) Solyc04g015980.2.1 (e_value=7e-77) genomic_reference:SL2.40ch04 gene_region:6570973-6574697 transcript_region:SL2.40ch04:6570973..6574697+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00021696g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|127 NbS00021696g0011.1 protein AED:0.08 eAED:0.18 QI:0|0|0|1|0|0|2|0|330; (*GB) gi|255587015|ref|XP_002534099.1| (e_value=2e-55) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=4e-36) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT4G33565.1 (e_value=1e-38) | Symbols: | RING/U-box superfamily protein | chr4:16136821-16137924 FORWARD LENGTH=367;; (*ITAG) Solyc04g014220.1.1 (e_value=7e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4521572-4522696 transcript_region:SL2.40ch04:4521572..4522696+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021696g0013.1 protein AED:0.49 eAED:0.58 QI:0|0|0|1|0|0|2|0|104; (*ITAG) Solyc04g014210.2.1 (e_value=4e-29) genomic_reference:SL2.40ch04 gene_region:4509385-4517601 transcript_region:SL2.40ch04:4509385..4517601+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0005622 NbS00001309g0016.1 protein AED:0.09 eAED:0.12 QI:159|1|0.55|1|0.87|0.88|9|0|1154; (*GB) gi|359475354|ref|XP_002282447.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase MARCH6 [Vitis vinifera];; (*SWP) sp|O60337|MARH6_HUMAN (e_value=3e-56) E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1 SV=2;; (*TAIR) AT4G34100.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1107;; (*ITAG) Solyc01g107880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00001309g0022.1 protein AED:0.23 eAED:0.23 QI:147|1|1|1|0.87|0.77|9|663|240; (*GB) gi|297802578|ref|XP_002869173.1| (e_value=1e-88) hypothetical protein ARALYDRAFT_491262 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C5D0|CBSX2_ARATH (e_value=6e-90) CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1;; (*TAIR) AT4G34120.1 (e_value=4e-91) | Symbols: LEJ1, CDCP1 | Cystathionine beta-synthase (CBS) family protein | chr4:16341194-16342893 FORWARD LENGTH=238;; (*ITAG) Solyc01g107860.2.1 (e_value=5e-118) genomic_reference:SL2.40ch01 gene_region:87011213-87017801 transcript_region:SL2.40ch01:87011213..87017801- functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00001309g0023.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.55|0.88|0.62|0.55|9|0|654; (*GB) gi|7673355|gb|AAF66823.1|AF190655_1 (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT2G23350.1 (e_value=0.0) | Symbols: PAB4, PABP4 | poly(A) binding protein 4 | chr2:9943209-9946041 FORWARD LENGTH=662;; (*ITAG) Solyc01g107870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87021438-87028206 transcript_region:SL2.40ch01:87021438..87028206+ go_terms:GO:0008143 functional_description:"Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143 NbS00001309g0024.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0.5|0.66|3|0|411; (*GB) gi|1685005|gb|AAB36653.1| (e_value=0.0) immediate-early salicylate-induced glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=6e-144) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=4e-126) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00001309g0005.1 protein AED:0.40 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|13492676|gb|AAK28304.1|AF346432_1 (e_value=2e-43) phenylpropanoid:glucosyltransferase 2, partial [Nicotiana tabacum];; (*SWP) sp|Q8W491|U73B3_ARATH (e_value=1e-22) UDP-glycosyltransferase 73B3 OS=Arabidopsis thaliana GN=UGT73B3 PE=2 SV=1;; (*TAIR) AT4G34131.1 (e_value=9e-24) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107810.2.1 (e_value=4e-45) genomic_reference:SL2.40ch01 gene_region:86988911-86990536 transcript_region:SL2.40ch01:86988911..86990536- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00009258g0010.1 protein AED:0.20 eAED:0.20 QI:269|1|0.83|1|0.8|1|6|293|413; (*GB) gi|255561407|ref|XP_002521714.1| (e_value=0.0) serine/threonine-protein kinase cx32, putative [Ricinus communis];; (*SWP) sp|P27450|CX32_ARATH (e_value=4e-168) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.1 (e_value=3e-175) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=414;; (*ITAG) Solyc03g032150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8933725-8938894 transcript_region:SL2.40ch03:8933725..8938894+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009258g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.57|0.5|0.87|0.85|1|8|649|600; (*GB) gi|255561391|ref|XP_002521706.1| (e_value=1e-145) plant ubiquilin, putative [Ricinus communis];; (*SWP) sp|Q9NRR5|UBQL4_HUMAN (e_value=1e-32) Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2;; (*TAIR) AT2G17200.1 (e_value=2e-58) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc03g032160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8939357-8949528 transcript_region:SL2.40ch03:8939357..8949528- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00021119g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.66|3|0|573; (*GB) gi|225462809|ref|XP_002266004.1| (e_value=0.0) PREDICTED: 2-hydroxyacyl-CoA lyase [Vitis vinifera];; (*SWP) sp|Q9LF46|HACL_ARATH (e_value=0.0) 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=2 SV=1;; (*TAIR) AT5G17380.1 (e_value=0.0) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr5:5724920-5726720 REVERSE LENGTH=572;; (*ITAG) Solyc02g091100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47093169-47096847 transcript_region:SL2.40ch02:47093169..47096847- go_terms:GO:0016830,GO:0030976 functional_description:"Oxalyl-CoA decarboxylase (AHRD V1 **-- D5PWM9_COREQ); contains Interpro domain(s) IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP binding region "; GO:0016830,GO:0030976 NbS00021119g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0.66|1|0.5|0.66|3|325|209; (*GB) gi|356507265|ref|XP_003522389.1| (e_value=2e-102) PREDICTED: histone chaperone ASF1B-like [Glycine max];; (*SWP) sp|Q9LS09|ASF1B_ARATH (e_value=3e-94) Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1;; (*TAIR) AT5G38110.1 (e_value=3e-95) | Symbols: SGA1, SGA01, ASF1B | anti- silencing function 1b | chr5:15208643-15210064 FORWARD LENGTH=218;; (*ITAG) Solyc02g091110.2.1 (e_value=4e-114) genomic_reference:SL2.40ch02 gene_region:47097884-47100605 transcript_region:SL2.40ch02:47097884..47100605- go_terms:GO:0042393 functional_description:"Histone chaperone ASF1-like protein (AHRD V1 **** D0NV04_PHYIN); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00007445g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.42|1|0.83|0.85|7|0|454; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=2e-176) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=5e-178) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT3G10890.1 (e_value=2e-105) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:3407455-3409000 REVERSE LENGTH=414;; (*ITAG) Solyc06g064520.2.1 (e_value=3e-179) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00039809g0001.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|1|1|2|0|339; (*GB) gi|225429874|ref|XP_002283505.1| (e_value=4e-152) PREDICTED: acetylglutamate kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SCL7|NAGK_ARATH (e_value=1e-135) Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana GN=NAGK PE=1 SV=1;; (*TAIR) AT3G57560.1 (e_value=9e-137) | Symbols: NAGK | N-acetyl-l-glutamate kinase | chr3:21311164-21312207 REVERSE LENGTH=347;; (*ITAG) Solyc11g005620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:480207-481250 transcript_region:SL2.40ch11:480207..481250+ go_terms:GO:0008652,GO:0006561,GO:0005737 functional_description:"Acetylglutamate kinase-like protein (AHRD V1 ***- Q949B4_ORYSA); contains Interpro domain(s) IPR011148 N-acetylglutamate kinase "; GO:0008652,GO:0006561,GO:0005737 NbS00037623g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|83284003|gb|ABC01909.1| (e_value=3e-103) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|P49693|RL193_ARATH (e_value=2e-97) 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3;; (*TAIR) AT4G02230.1 (e_value=1e-98) | Symbols: | Ribosomal protein L19e family protein | chr4:979391-980640 REVERSE LENGTH=208;; (*ITAG) Solyc09g075430.2.1 (e_value=2e-108) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00051584g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|1|1|4|264|101; (*GB) gi|213868279|gb|ACJ54186.1| (e_value=2e-57) SUMO [Nicotiana benthamiana];; (*SWP) sp|P55857|SUMO1_ORYSJ (e_value=1e-52) Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=4e-53) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc07g049360.2.1 (e_value=1e-59) genomic_reference:SL2.40ch07 gene_region:56958023-56960587 transcript_region:SL2.40ch07:56958023..56960587- go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier 2 (AHRD V1 ***- C3KI25_ANOFI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00051584g0010.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.7|0.63|11|341|414; (*GB) gi|225447127|ref|XP_002271163.1| (e_value=2e-166) PREDICTED: uncharacterized protein LOC100256852 [Vitis vinifera];; (*SWP) sp|Q04835|YM87_YEAST (e_value=8e-14) Uncharacterized membrane protein YMR253C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR253C PE=1 SV=1;; (*TAIR) AT2G05755.1 (e_value=3e-141) | Symbols: | Nodulin MtN21 /EamA-like transporter family protein | chr2:2170905-2173646 FORWARD LENGTH=401;; (*ITAG) Solyc05g042050.2.1 (e_value=2e-155) genomic_reference:SL2.40ch05 gene_region:53694770-53703158 transcript_region:SL2.40ch05:53694770..53703158- go_terms:GO:0016020 functional_description:"Integral membrane family protein (AHRD V1 ***- D7L995_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00051584g0004.1 protein AED:0.48 eAED:0.67 QI:0|0|0|1|1|1|3|0|127 NbS00021556g0018.1 protein AED:0.14 eAED:0.14 QI:203|1|0.66|1|1|1|3|0|698; (*GB) gi|224101995|ref|XP_002312505.1| (e_value=1e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUM0|C3H17_ARATH (e_value=6e-103) Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1;; (*TAIR) AT2G02160.1 (e_value=5e-104) | Symbols: | CCCH-type zinc finger family protein | chr2:553407-555899 REVERSE LENGTH=669;; (*ITAG) Solyc01g008170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2308753-2312911 transcript_region:SL2.40ch01:2308753..2312911+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 17 (AHRD V1 ***- C3H17_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00021556g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|842; (*GB) gi|225425114|ref|XP_002273186.1| (e_value=0.0) PREDICTED: phytosulfokine receptor 1 [Vitis vinifera];; (*SWP) sp|Q8LPB4|PSKR1_DAUCA (e_value=0.0) Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1;; (*TAIR) AT2G02220.1 (e_value=0.0) | Symbols: ATPSKR1, PSKR1 | phytosulfokin receptor 1 | chr2:584098-587124 REVERSE LENGTH=1008;; (*ITAG) Solyc01g008140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2287657-2291256 transcript_region:SL2.40ch01:2287657..2291256- go_terms:GO:0001653 functional_description:"Receptor kinase (AHRD V1 **** B8XA57_GOSBA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0001653 NbS00021556g0019.1 protein AED:0.19 eAED:0.21 QI:217|0.6|0.83|1|1|1|6|310|505; (*GB) gi|255555541|ref|XP_002518807.1| (e_value=4e-180) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G02170.2 (e_value=4e-117) | Symbols: | Remorin family protein | chr2:556595-558610 REVERSE LENGTH=486;; (*ITAG) Solyc01g008180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2327830-2334359 transcript_region:SL2.40ch01:2327830..2334359- go_terms:GO:0003677 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *--* Q42051_ARATH); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00021556g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|224108155|ref|XP_002314740.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT3G18420.1 (e_value=1e-80) | Symbols: | Protein prenylyltransferase superfamily protein | chr3:6324771-6325721 REVERSE LENGTH=316;; (*ITAG) Solyc01g008160.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:2304525-2306017 transcript_region:SL2.40ch01:2304525..2306017- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 ***- D7L8H9_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00037192g0017.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|403; (*GB) gi|148611499|gb|ABQ95989.1| (e_value=0.0) phospholipase A1 [Capsicum annuum];; (*SWP) sp|A2ZW16|PLA1_ORYSJ (e_value=4e-158) Phospholipase A1-II 1 OS=Oryza sativa subsp. japonica GN=Os01g0651100 PE=2 SV=2;; (*TAIR) AT4G18550.1 (e_value=5e-154) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36938527-36940052 transcript_region:SL2.40ch02:36938527..36940052- go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00037192g0020.1 protein AED:0.36 eAED:0.40 QI:0|0.33|0.28|1|0.16|0.57|7|0|396; (*GB) gi|255548626|ref|XP_002515369.1| (e_value=1e-32) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|P0DH85|REM10_ARATH (e_value=3e-28) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=2e-29) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc08g006210.1.1 (e_value=6e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:907768-911493 transcript_region:SL2.40ch08:907768..911493+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 *-*- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00037192g0021.1 protein AED:0.43 eAED:0.45 QI:0|0.2|0.16|0.83|0.2|0.33|6|0|240; (*ITAG) Solyc08g006490.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1082488-1084431 transcript_region:SL2.40ch08:1082488..1084431+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00037192g0002.1 protein AED:0.33 eAED:0.33 QI:100|1|0.5|1|0|0|2|0|94; (*ITAG) Solyc02g014380.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:7193767-7200167 transcript_region:SL2.40ch02:7193767..7200167+ go_terms:GO:0055114 functional_description:"Protein odr-4 homolog (AHRD V1 ***- ODR4_MOUSE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0055114 NbS00037192g0010.1 protein AED:0.36 eAED:0.40 QI:0|0|0|1|1|1|2|0|103; (*ITAG) Solyc01g056230.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00037192g0012.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|96 NbS00037192g0022.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|102; (*ITAG) Solyc02g077060.1.1 (e_value=3e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36700197-36700676 transcript_region:SL2.40ch02:36700197..36700676+ functional_description:"RPW8.2 (AHRD V1 **-- C4P0N9_ARALP); contains Interpro domain(s) IPR008808 Mildew-resistance, broad-spectrum "; NbS00037192g0019.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0|2|0|78; (*ITAG) Solyc08g006210.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:907768-911493 transcript_region:SL2.40ch08:907768..911493+ go_terms:GO:0003700 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 *-*- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00040454g0005.1 protein AED:0.21 eAED:0.26 QI:57|1|0.66|1|0.8|0.83|6|0|316; (*GB) gi|224119626|ref|XP_002318120.1| (e_value=1e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XEE9|ALG11_ARATH (e_value=8e-164) GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2;; (*TAIR) AT2G40190.1 (e_value=6e-165) | Symbols: LEW3 | UDP-Glycosyltransferase superfamily protein | chr2:16785232-16787257 FORWARD LENGTH=463;; (*ITAG) Solyc10g076800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59085382-59089499 transcript_region:SL2.40ch10:59085382..59089499- go_terms:GO:0009058 functional_description:"Alpha-1 2-mannosyltransferase alg11 (AHRD V1 **-- B6SM36_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00040454g0002.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|60; (*ITAG) Solyc10g076800.1.1 (e_value=4e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59085382-59089499 transcript_region:SL2.40ch10:59085382..59089499- go_terms:GO:0009058 functional_description:"Alpha-1 2-mannosyltransferase alg11 (AHRD V1 **-- B6SM36_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00016615g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|399; (*GB) gi|295834059|gb|ADG41743.1| (e_value=0.0) putative progesterone 5 beta-reductase [Nicotiana tabacum];; (*SWP) sp|O74913|YJ72_SCHPO (e_value=7e-34) Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=2 SV=1;; (*TAIR) AT4G24220.2 (e_value=0.0) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=387;; (*ITAG) Solyc10g049620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41753579-41754837 transcript_region:SL2.40ch10:41753579..41754837+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00016615g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|371491777|gb|AEX31544.1| (e_value=2e-150) putative steroid 5beta-reductase [Solanum tuberosum];; (*SWP) sp|O74913|YJ72_SCHPO (e_value=5e-16) Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=2 SV=1;; (*TAIR) AT4G24220.1 (e_value=2e-120) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388;; (*ITAG) Solyc10g049600.1.1 (e_value=1e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41697830-41701558 transcript_region:SL2.40ch10:41697830..41701558+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00016615g0003.1 protein AED:0.34 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|142; (*GB) gi|295834059|gb|ADG41743.1| (e_value=3e-85) putative progesterone 5 beta-reductase [Nicotiana tabacum];; (*TAIR) AT4G24220.1 (e_value=3e-76) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388;; (*ITAG) Solyc10g049620.1.1 (e_value=2e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41753579-41754837 transcript_region:SL2.40ch10:41753579..41754837+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00016615g0013.1 protein AED:0.00 eAED:0.00 QI:55|1|1|1|0|0|2|177|266 NbS00016615g0012.1 protein AED:0.13 eAED:0.13 QI:324|1|1|1|1|1|4|205|369; (*GB) gi|255573107|ref|XP_002527483.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|O81760|P2C63_ARATH (e_value=0.0) Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1;; (*TAIR) AT4G33920.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:16260876-16262703 FORWARD LENGTH=380;; (*ITAG) Solyc10g049630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41774876-41777511 transcript_region:SL2.40ch10:41774876..41777511- go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00028990g0004.1 protein AED:0.31 eAED:0.33 QI:0|0.66|0.7|1|0.33|0.6|10|109|319; (*GB) gi|356516841|ref|XP_003527101.1| (e_value=8e-131) PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 1 [Glycine max];; (*SWP) sp|P0C895|Y2010_ARATH (e_value=4e-35) LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1;; (*TAIR) AT5G07910.1 (e_value=5e-107) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:2521937-2523769 REVERSE LENGTH=262;; (*ITAG) Solyc12g040320.1.1 (e_value=5e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:38767584-38778283 transcript_region:SL2.40ch12:38767584..38778283- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00056167g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|0|1|0|371; (*GB) gi|359475686|ref|XP_003631731.1| (e_value=1e-95) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=4e-67) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G11770.1 (e_value=1e-70) | Symbols: | FAD-binding Berberine family protein | chr1:3975679-3977289 FORWARD LENGTH=536;; (*ITAG) Solyc02g022850.1.1 (e_value=5e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:14916195-14917820 transcript_region:SL2.40ch02:14916195..14917820- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00009945g0013.1 protein AED:0.41 eAED:0.42 QI:83|0.66|0.57|1|0.66|0.71|7|0|308; (*GB) gi|255550121|ref|XP_002516111.1| (e_value=1e-97) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=2e-85) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=1e-86) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc07g041190.2.1 (e_value=1e-94) genomic_reference:SL2.40ch07 gene_region:49299701-49303716 transcript_region:SL2.40ch07:49299701..49303716- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00009945g0017.1 protein AED:0.18 eAED:0.19 QI:0|0.25|0.2|1|0.5|0.4|5|0|738; (*GB) gi|225444822|ref|XP_002279012.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249046 [Vitis vinifera];; (*TAIR) AT5G20610.1 (e_value=8e-160) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc05g032750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:44311051-44315155 transcript_region:SL2.40ch05:44311051..44315155+ go_terms:GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00009945g0018.1 protein AED:0.38 eAED:0.42 QI:37|0|0|1|0|0|3|0|250; (*GB) gi|297738617|emb|CBI27862.3| (e_value=8e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G20610.1 (e_value=1e-49) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc05g032750.2.1 (e_value=7e-107) genomic_reference:SL2.40ch05 gene_region:44311051-44315155 transcript_region:SL2.40ch05:44311051..44315155+ go_terms:GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00016169g0012.1 protein AED:0.25 eAED:0.25 QI:247|0.66|0.5|1|0.66|0.25|4|0|114; (*GB) gi|356540516|ref|XP_003538734.1| (e_value=4e-38) PREDICTED: uncharacterized protein LOC100809500 [Glycine max];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=1e-33) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.2 (e_value=3e-35) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15012251 REVERSE LENGTH=389;; (*ITAG) Solyc08g078650.2.1 (e_value=6e-43) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00016169g0007.1 protein AED:0.04 eAED:0.04 QI:336|1|1|1|1|1|5|252|245; (*GB) gi|255550121|ref|XP_002516111.1| (e_value=3e-119) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=3e-104) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=2e-105) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc07g041190.2.1 (e_value=2e-116) genomic_reference:SL2.40ch07 gene_region:49299701-49303716 transcript_region:SL2.40ch07:49299701..49303716- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00016169g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.8|1|1|0.6|0.66|6|0|305; (*GB) gi|359484451|ref|XP_002280213.2| (e_value=2e-163) PREDICTED: protein bem46-like [Vitis vinifera];; (*SWP) sp|Q32LS6|ABHDD_DANRE (e_value=1e-45) Abhydrolase domain-containing protein 13 OS=Danio rerio GN=abhd13 PE=2 SV=1;; (*TAIR) AT5G20520.1 (e_value=3e-157) | Symbols: WAV2 | alpha/beta-Hydrolases superfamily protein | chr5:6943536-6946315 REVERSE LENGTH=308;; (*ITAG) Solyc07g041200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49305577-49311893 transcript_region:SL2.40ch07:49305577..49311893- functional_description:"Abhydrolase domain-containing protein 13 (AHRD V1 **-- C1BT46_9MAXI); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00039254g0011.1 protein AED:0.36 eAED:0.36 QI:0|0.88|0.9|1|0.77|0.9|10|246|511; (*GB) gi|296082464|emb|CBI21469.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=4e-180) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT5G10080.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3150843-3153380 FORWARD LENGTH=528;; (*ITAG) Solyc04g054490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51757496-51766115 transcript_region:SL2.40ch04:51757496..51766115+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M2T2_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00039254g0010.1 protein AED:0.19 eAED:0.19 QI:236|0.5|0.33|0.66|1|1|3|0|123; (*GB) gi|337732515|gb|AEI71779.1| (e_value=6e-47) JOKA2 [Nicotiana tabacum];; (*TAIR) AT4G24690.1 (e_value=4e-36) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704;; (*ITAG) Solyc03g112230.2.1 (e_value=3e-48) genomic_reference:SL2.40ch03 gene_region:56747879-56752208 transcript_region:SL2.40ch03:56747879..56752208- go_terms:GO:0008270 functional_description:"ZZ type zinc finger domain-containing protein (Fragment) (AHRD V1 *--- C1GFD2_PARBD); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0008270 NbS00028139g0004.1 protein AED:0.06 eAED:0.06 QI:309|1|1|1|1|1|8|393|540; (*GB) gi|255564188|ref|XP_002523091.1| (e_value=0.0) magnesium/proton exchanger, putative [Ricinus communis];; (*SWP) sp|O22252|MHX_ARATH (e_value=0.0) Magnesium/proton exchanger OS=Arabidopsis thaliana GN=MHX PE=2 SV=3;; (*TAIR) AT2G47600.1 (e_value=0.0) | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/proton exchanger | chr2:19524518-19526828 REVERSE LENGTH=539;; (*ITAG) Solyc06g009130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3079097-3086035 transcript_region:SL2.40ch06:3079097..3086035+ go_terms:GO:0016021 functional_description:"Sodium-calcium exchanger 3 (Fragment) (AHRD V1 *-*- Q9EPU8_MOUSE); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021 NbS00032198g0014.1 protein AED:0.14 eAED:0.14 QI:265|0.83|1|1|0.16|0.42|7|904|185; (*GB) gi|359481735|ref|XP_003632666.1| (e_value=2e-108) PREDICTED: PRA1 family protein A2 isoform 3 [Vitis vinifera];; (*SWP) sp|Q9LZM7|PR1A1_ARATH (e_value=2e-87) PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1;; (*TAIR) AT5G02040.2 (e_value=1e-88) | Symbols: PRA1.A1 | prenylated RAB acceptor 1.A1 | chr5:401163-402471 FORWARD LENGTH=209;; (*ITAG) Solyc09g011310.2.1 (e_value=8e-112) genomic_reference:SL2.40ch09 gene_region:4653532-4658170 transcript_region:SL2.40ch09:4653532..4658170- functional_description:"PRA1 family protein (AHRD V1 ***- B4G0F8_MAIZE); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00032198g0013.1 protein AED:0.26 eAED:0.26 QI:0|0.72|0.75|1|0.63|0.66|12|240|689; (*GB) gi|225440496|ref|XP_002273930.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase atg-1 [Vitis vinifera];; (*SWP) sp|Q52EB3|ATG1_MAGO7 (e_value=3e-62) Serine/threonine-protein kinase ATG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG1 PE=1 SV=1;; (*TAIR) AT2G37840.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:15851978-15856047 FORWARD LENGTH=733;; (*ITAG) Solyc09g011320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4659704-4666597 transcript_region:SL2.40ch09:4659704..4666597+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032198g0015.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|3|0|853; (*GB) gi|224138878|ref|XP_002322924.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P17801|KPRO_MAIZE (e_value=1e-176) Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2;; (*TAIR) AT1G34300.1 (e_value=1e-78) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc09g011330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4671126-4673537 transcript_region:SL2.40ch09:4671126..4673537+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor protein kinase-like (AHRD V1 **** Q5QLM8_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00007044g0002.1 protein AED:0.68 eAED:0.68 QI:0|0|0.33|0.33|1|1|3|239|89 NbS00007044g0003.1 protein AED:0.43 eAED:0.55 QI:0|0|0|1|1|0.66|3|0|196; (*GB) gi|1762130|gb|AAB39827.1| (e_value=1e-85) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|Q9LJE4|CPNB2_ARATH (e_value=6e-84) Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1;; (*TAIR) AT3G13470.1 (e_value=4e-85) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00014480g0003.1 protein AED:0.18 eAED:0.19 QI:0|1|0|1|1|0.5|2|0|412; (*GB) gi|255580133|ref|XP_002530898.1| (e_value=1e-90) transcription factor, putative [Ricinus communis];; (*TAIR) AT5G12330.4 (e_value=5e-72) | Symbols: LRP1 | Lateral root primordium (LRP) protein-related | chr5:3987677-3989408 REVERSE LENGTH=407;; (*ITAG) Solyc11g064800.1.1 (e_value=5e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47078600-47083111 transcript_region:SL2.40ch11:47078600..47083111- functional_description:"Stylish (AHRD V1 *--- D2KC71_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00003194g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.71|0.75|1|0.71|0.62|8|56|1236; (*GB) gi|297745966|emb|CBI16022.3| (e_value=4e-63) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g031650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23381791-23386705 transcript_region:SL2.40ch09:23381791..23386705- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q1RQ04_CIOIN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00007970g0004.1 protein AED:0.15 eAED:0.15 QI:78|1|0.77|1|0.87|0.77|9|0|519; (*GB) gi|359489274|ref|XP_002274075.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263281 [Vitis vinifera];; (*TAIR) AT2G44970.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18548999-18552019 REVERSE LENGTH=502;; (*ITAG) Solyc01g090590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76020555-76027535 transcript_region:SL2.40ch01:76020555..76027535- functional_description:"Os11g0109966 protein (Fragment) (AHRD V1 *-*- C7J8E6_ORYSJ)"; NbS00058414g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|0|1|0|91; (*GB) gi|5734587|emb|CAB52797.1| (e_value=8e-48) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=6e-23) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT4G21490.1 (e_value=2e-34) | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:11436495-11439326 REVERSE LENGTH=580;; (*ITAG) Solyc10g008630.2.1 (e_value=3e-50) genomic_reference:SL2.40ch10 gene_region:2704288-2710170 transcript_region:SL2.40ch10:2704288..2710170+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00000694g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|257; (*GB) gi|116268417|gb|ABJ96374.1| (e_value=5e-45) hypothetical protein [Prunus persica];; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=2e-33) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=2e-34) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc04g014360.2.1 (e_value=3e-123) genomic_reference:SL2.40ch04 gene_region:4614412-4616761 transcript_region:SL2.40ch04:4614412..4616761- go_terms:GO:0003700 functional_description:"Transcription factor SPATULA (AHRD V1 *-** SPT_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00000694g0002.1 protein AED:0.00 eAED:0.47 QI:51|-1|0|1|-1|1|1|133|68 NbS00016441g0001.1 protein AED:0.25 eAED:0.37 QI:0|0|0|1|1|1|2|0|241; (*GB) gi|225428390|ref|XP_002283597.1| (e_value=8e-53) PREDICTED: bifunctional phosphatase IMPL2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=8e-53) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=1e-53) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g109930.2.1 (e_value=2e-54) genomic_reference:SL2.40ch01 gene_region:88522523-88527340 transcript_region:SL2.40ch01:88522523..88527340+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7MGB6_ARALY); contains Interpro domain(s) IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase "; GO:0008934 NbS00022348g0008.1 protein AED:0.25 eAED:0.32 QI:0|0.75|0.55|0.88|0.75|0.77|9|0|268; (*GB) gi|255571033|ref|XP_002526467.1| (e_value=6e-152) ELMO domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=9e-26) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G60260.4 (e_value=3e-146) | Symbols: | ELMO/CED-12 family protein | chr3:22274303-22276839 FORWARD LENGTH=266;; (*ITAG) Solyc01g089980.2.1 (e_value=6e-159) genomic_reference:SL2.40ch01 gene_region:75451177-75457993 transcript_region:SL2.40ch01:75451177..75457993- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein (AHRD V1 ***- Q16Y60_AEDAE); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00022348g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.25|0.75|0.66|0.75|4|135|138; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=8e-78) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=2e-79) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=3e-68) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00013957g0005.1 protein AED:0.26 eAED:0.26 QI:0|0.78|0.6|1|0.42|0.46|15|0|1067; (*GB) gi|255540621|ref|XP_002511375.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G48200.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:17832949-17837371 REVERSE LENGTH=1088;; (*ITAG) Solyc03g112760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57157046-57165040 transcript_region:SL2.40ch03:57157046..57165040+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057548g0005.1 protein AED:0.06 eAED:0.07 QI:0|1|0.8|1|0.5|0.4|5|0|623; (*GB) gi|356500557|ref|XP_003519098.1| (e_value=0.0) PREDICTED: nitrate transporter 1.2-like [Glycine max];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00029361g0003.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|225430563|ref|XP_002262758.1| (e_value=1e-67) PREDICTED: uncharacterized protein LOC100257058 isoform 1 [Vitis vinifera];; (*TAIR) AT5G10750.1 (e_value=1e-69) | Symbols: | Protein of unknown function (DUF1336) | chr5:3399072-3399980 FORWARD LENGTH=302;; (*ITAG) Solyc08g068880.1.1 (e_value=7e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55178060-55179007 transcript_region:SL2.40ch08:55178060..55179007- functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00029361g0015.1 protein AED:0.40 eAED:0.40 QI:332|0.2|0.83|1|0.4|0.66|6|27|191; (*ITAG) Solyc08g068840.2.1 (e_value=8e-32) genomic_reference:SL2.40ch08 gene_region:55135933-55140666 transcript_region:SL2.40ch08:55135933..55140666- go_terms:GO:0005634 functional_description:"Transcription factor IIIB 90 kDa subunit (AHRD V1 *-*- TF3B_HUMAN); contains Interpro domain(s) IPR011665 Brf1-like TBP-binding "; GO:0005634 NbS00029361g0016.1 protein AED:0.44 eAED:0.59 QI:0|0|0|1|0.33|0|4|0|214; (*ITAG) Solyc03g112700.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57115377-57116369 transcript_region:SL2.40ch03:57115377..57116369- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00029361g0005.1 protein AED:0.08 eAED:0.08 QI:81|0.33|0.5|1|1|1|4|195|497; (*GB) gi|225430539|ref|XP_002285580.1| (e_value=7e-157) PREDICTED: zinc finger CCCH domain-containing protein 18 [Vitis vinifera];; (*SWP) sp|Q6K687|C3H18_ORYSJ (e_value=6e-125) Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1;; (*TAIR) AT2G24830.1 (e_value=1e-109) | Symbols: | zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein | chr2:10576993-10579154 REVERSE LENGTH=497;; (*ITAG) Solyc08g068830.2.1 (e_value=3e-123) genomic_reference:SL2.40ch08 gene_region:55133743-55135662 transcript_region:SL2.40ch08:55133743..55135662+ go_terms:GO:0005622 functional_description:"Zinc finger CCCH-type with G patch domain-containing protein (AHRD V1 *-*- ZGPAT_HUMAN); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00042468g0007.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|6|376|249; (*GB) gi|14719276|gb|AAK73102.1|AF390556_1 (e_value=3e-125) Bax inhibitor 1 [Nicotiana tabacum];; (*SWP) sp|Q9LD45|BI1_ARATH (e_value=2e-96) Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1;; (*TAIR) AT5G47120.1 (e_value=1e-97) | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 1 | chr5:19136071-19137585 FORWARD LENGTH=247;; (*ITAG) Solyc08g077980.2.1 (e_value=3e-118) genomic_reference:SL2.40ch08 gene_region:59033727-59036658 transcript_region:SL2.40ch08:59033727..59036658- go_terms:GO:0005515 functional_description:"Bax inhibitor (AHRD V1 ***- Q6U1L7_SOLLC); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005515 NbS00051674g0003.1 protein AED:0.36 eAED:0.37 QI:244|0.41|0.69|0.84|0.91|0.84|13|0|320; (*GB) gi|359476646|ref|XP_003631875.1| (e_value=0.0) PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera];; (*SWP) sp|Q9SD33|U183_ARATH (e_value=0.0) UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2;; (*TAIR) AT3G51130.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 269 Blast hits to 265 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr3:18994219-18997180 FORWARD LENGTH=410;; (*ITAG) Solyc02g084500.2.1 (e_value=5e-145) genomic_reference:SL2.40ch02 gene_region:42167363-42173439 transcript_region:SL2.40ch02:42167363..42173439- functional_description:"UPF0183 domain protein (AHRD V1 **-- B8M4A7_TALSN); contains Interpro domain(s) IPR005373 Uncharacterised protein family UPF0183 "; NbS00007039g0004.1 protein AED:0.30 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|117 NbS00014463g0006.1 protein AED:0.19 eAED:0.20 QI:0|1|0.66|1|1|1|3|0|258; (*GB) gi|224099991|ref|XP_002311700.1| (e_value=1e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=1e-52) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT3G24310.1 (e_value=4e-85) | Symbols: MYB305, ATMYB71 | myb domain protein 305 | chr3:8811336-8812330 REVERSE LENGTH=269;; (*ITAG) Solyc09g090790.2.1 (e_value=5e-115) genomic_reference:SL2.40ch09 gene_region:65552080-65553197 transcript_region:SL2.40ch09:65552080..65553197- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6QAD8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00061070g0009.1 protein AED:0.31 eAED:0.33 QI:237|1|0.88|1|0.87|1|9|244|789; (*GB) gi|350537307|ref|NP_001234544.1| (e_value=0.0) Tm-1^GCR237 protein [Solanum lycopersicum];; (*SWP) sp|P55607|Y4OV_RHISN (e_value=2e-89) Uncharacterized protein y4oV OS=Rhizobium sp. (strain NGR234) GN=NGR_a02140 PE=4 SV=1;; (*TAIR) AT5G66420.2 (e_value=0.0) | Symbols: | LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr5:26521893-26524986 REVERSE LENGTH=754;; (*ITAG) Solyc02g062560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28856001-28864037 transcript_region:SL2.40ch02:28856001..28864037- go_terms:GO:0005975 functional_description:"TIM-barrel enzyme family protein (AHRD V1 *--- C5JTT1_AJEDS); contains Interpro domain(s) IPR008322 Uncharacterised conserved protein UCP033271 IPR009215 TIM-barrel signal transduction protein, predicted IPR018087 Glycoside hydrolase, family 5, conserved site "; GO:0005975 NbS00061070g0011.1 protein AED:0.47 eAED:0.47 QI:0|0.33|0|1|0.33|0.25|4|0|171; (*GB) gi|255561048|ref|XP_002521536.1| (e_value=6e-64) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT3G50930.1 (e_value=2e-58) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc02g062550.2.1 (e_value=9e-91) genomic_reference:SL2.40ch02 gene_region:28853140-28855308 transcript_region:SL2.40ch02:28853140..28855308- go_terms:GO:0042623,GO:0005515 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_HELPY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00061070g0002.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|2|0|158; (*GB) gi|39104562|dbj|BAC41960.2| (e_value=7e-56) putative BCS1 protein [Arabidopsis thaliana];; (*TAIR) AT3G50940.1 (e_value=2e-58) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18934086-18935528 FORWARD LENGTH=451;; (*ITAG) Solyc03g033840.2.1 (e_value=5e-75) genomic_reference:SL2.40ch03 gene_region:9723953-9726891 transcript_region:SL2.40ch03:9723953..9726891- go_terms:GO:0042623,GO:0005515 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ASPNG); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00061070g0012.1 protein AED:0.41 eAED:0.70 QI:0|0|0|0.5|0.4|0.5|6|0|176 NbS00061070g0013.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|125 NbS00033401g0003.1 protein AED:0.14 eAED:0.14 QI:178|1|1|1|0.8|1|6|430|713; (*GB) gi|298204770|emb|CBI25268.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g117660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60794807-60800638 transcript_region:SL2.40ch03:60794807..60800638+ go_terms:GO:0008270 functional_description:"Mandelonitrile lyase (AHRD V1 *-*- B6SVJ2_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00040112g0013.1 protein AED:0.04 eAED:0.05 QI:81|0.72|0.41|1|0.72|0.66|12|0|1807; (*GB) gi|356564737|ref|XP_003550605.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100794210 [Glycine max];; (*SWP) sp|Q22516|CHD3_CAEEL (e_value=3e-16) Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2;; (*TAIR) AT5G22760.1 (e_value=0.0) | Symbols: | PHD finger family protein | chr5:7571635-7577662 FORWARD LENGTH=1566;; (*ITAG) Solyc11g066780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49647915-49660185 transcript_region:SL2.40ch11:49647915..49660185- go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0008270 NbS00040112g0012.1 protein AED:0.14 eAED:0.14 QI:315|0.72|0.84|0.96|0.8|0.73|26|452|980; (*GB) gi|225436363|ref|XP_002270388.1| (e_value=0.0) PREDICTED: AP-2 complex subunit alpha-2 [Vitis vinifera];; (*SWP) sp|Q8LPL6|AP2A1_ARATH (e_value=0.0) AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1;; (*TAIR) AT5G22770.2 (e_value=0.0) | Symbols: alpha-ADR | alpha-adaptin | chr5:7579844-7588026 REVERSE LENGTH=1012;; (*ITAG) Solyc06g074650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42580360-42594085 transcript_region:SL2.40ch06:42580360..42594085- go_terms:GO:0008022 functional_description:"AP-2 complex subunit alpha (AHRD V1 ***- C0NYN0_AJECG); contains Interpro domain(s) IPR017104 Adaptor protein complex AP-2, alpha subunit "; GO:0008022 NbS00008691g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.4|0.8|1|1|5|31|269; (*GB) gi|359479518|ref|XP_002274218.2| (e_value=2e-126) PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=1e-126) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=9e-128) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc01g009520.2.1 (e_value=3e-137) genomic_reference:SL2.40ch01 gene_region:3780910-3784239 transcript_region:SL2.40ch01:3780910..3784239+ go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00018845g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|77 NbS00018845g0012.1 protein AED:0.23 eAED:0.23 QI:92|1|1|1|1|1|6|271|276; (*GB) gi|297734015|emb|CBI15262.3| (e_value=1e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LGU7|RNZN_ARATH (e_value=3e-113) Nuclear ribonuclease Z OS=Arabidopsis thaliana GN=NUZ PE=2 SV=3;; (*TAIR) AT1G74700.1 (e_value=2e-114) | Symbols: NUZ, TRZ1 | tRNAse Z1 | chr1:28065345-28067130 FORWARD LENGTH=280;; (*ITAG) Solyc03g113140.2.1 (e_value=7e-160) genomic_reference:SL2.40ch03 gene_region:57457112-57460414 transcript_region:SL2.40ch03:57457112..57460414- go_terms:GO:0042781 functional_description:"Ribonuclease Z family protein (AHRD V1 ***- D0LN77_HALO1)"; GO:0042781 NbS00018845g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|1|1|1|4|0|381; (*GB) gi|225430738|ref|XP_002266501.1| (e_value=1e-27) PREDICTED: late embryogenesis abundant protein D-29 [Vitis vinifera];; (*TAIR) AT2G18340.1 (e_value=1e-17) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr2:7969400-7971025 FORWARD LENGTH=456;; (*ITAG) Solyc03g034030.2.1 (e_value=2e-74) genomic_reference:SL2.40ch03 gene_region:10024161-10025931 transcript_region:SL2.40ch03:10024161..10025931+ go_terms:GO:0005515 functional_description:"Ce-LEA (AHRD V1 ***- O16527_CAEEL)"; GO:0005515 NbS00024282g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|0|512; (*GB) gi|350276084|dbj|BAL03610.1| (e_value=0.0) CBL-interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q7X996|CIPK2_ORYSJ (e_value=0.0) CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1;; (*TAIR) AT5G58380.1 (e_value=0.0) | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting protein 1 | chr5:23597092-23598531 REVERSE LENGTH=479;; (*ITAG) Solyc05g052270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61678974-61680296 transcript_region:SL2.40ch05:61678974..61680296- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 13 (AHRD V1 **** C4P7W2_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00024282g0013.1 protein AED:0.14 eAED:0.14 QI:43|0.83|0.71|1|0.83|0.85|7|189|294; (*GB) gi|357436403|ref|XP_003588477.1| (e_value=1e-85) Appr-1-p processing enzyme family protein [Medicago truncatula];; (*SWP) sp|Q8KAE4|Y2219_CHLTE (e_value=1e-36) Macro domain-containing protein CT2219 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=CT2219 PE=4 SV=1;; (*TAIR) AT2G40600.1 (e_value=3e-85) | Symbols: | appr-1-p processing enzyme family protein | chr2:16947012-16948537 REVERSE LENGTH=257;; (*ITAG) Solyc05g052260.2.1 (e_value=3e-103) genomic_reference:SL2.40ch05 gene_region:61668009-61674331 transcript_region:SL2.40ch05:61668009..61674331+ functional_description:"Appr-1-p processing domain protein (AHRD V1 **-- B8FDL2_DESAA); contains Interpro domain(s) IPR002589 Appr-1-p processing "; NbS00024282g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=5e-25) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc01g097720.1.1 (e_value=5e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80211653-80212741 transcript_region:SL2.40ch01:80211653..80212741+ functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC)"; NbS00024282g0012.1 protein AED:0.30 eAED:0.30 QI:176|1|1|1|1|1|6|259|228; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=5e-150) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=2e-151) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=2e-133) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=1e-149) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00058245g0004.1 protein AED:0.10 eAED:0.10 QI:362|0.75|1|1|0.5|0.4|5|559|292; (*GB) gi|255560936|ref|XP_002521481.1| (e_value=9e-165) protein kinase atn1, putative [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-45) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50180.1 (e_value=3e-146) | Symbols: | Protein kinase superfamily protein | chr5:20431116-20432883 FORWARD LENGTH=346;; (*ITAG) Solyc02g093410.2.1 (e_value=2e-173) genomic_reference:SL2.40ch02 gene_region:48864525-48868381 transcript_region:SL2.40ch02:48864525..48868381+ go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q7XJ65_CUCSA); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004708 NbS00010363g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.95|0.90|1|0.71|0.81|22|0|823; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*SWP) sp|Q6P158|DHX57_HUMAN (e_value=4e-178) Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2;; (*TAIR) AT1G58060.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00010363g0011.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.4|1|0.8|5|0|314; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=8e-92) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=5e-87) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00055693g0005.1 protein AED:0.05 eAED:0.05 QI:205|0.9|0.90|1|0.7|0.72|11|334|1213; (*GB) gi|302142359|emb|CBI19562.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96JX3|SRAC1_HUMAN (e_value=3e-50) Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=2 SV=1;; (*TAIR) AT4G34310.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:16414113-16419542 FORWARD LENGTH=1228;; (*ITAG) Solyc04g079280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61384114-61390904 transcript_region:SL2.40ch04:61384114..61390904+ go_terms:GO:0005488 functional_description:"LipA and NB-ARC domain protein (AHRD V1 *--- B8NDK8_ASPFN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00034019g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.76|0.78|0.92|0.61|0.57|14|304|414; (*GB) gi|359481109|ref|XP_002267146.2| (e_value=0.0) PREDICTED: uncharacterized protein At3g58460-like [Vitis vinifera];; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=2e-175) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2;; (*TAIR) AT3G58460.1 (e_value=1e-176) | Symbols: ATRBL15, RBL15 | RHOMBOID-like protein 15 | chr3:21623374-21626348 REVERSE LENGTH=403;; (*ITAG) Solyc10g081600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61954776-61960495 transcript_region:SL2.40ch10:61954776..61960495+ go_terms:GO:0016021 functional_description:"Rhomboid protease GlpG (AHRD V1 *-*- C5B969_EDWI9); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00034019g0011.1 protein AED:0.02 eAED:0.02 QI:45|1|1|1|1|1|4|512|241; (*GB) gi|359481089|ref|XP_002265324.2| (e_value=9e-99) PREDICTED: N(6)-adenine-specific DNA methyltransferase 2-like [Vitis vinifera];; (*SWP) sp|Q8WVE0|N6MT2_HUMAN (e_value=1e-51) N(6)-adenine-specific DNA methyltransferase 2 OS=Homo sapiens GN=N6AMT2 PE=1 SV=1;; (*TAIR) AT3G58470.1 (e_value=6e-91) | Symbols: | nucleic acid binding;methyltransferases | chr3:21627070-21628507 REVERSE LENGTH=248;; (*ITAG) Solyc10g081590.1.1 (e_value=4e-119) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61948462-61951703 transcript_region:SL2.40ch10:61948462..61951703+ go_terms:GO:0032259 functional_description:"N6-adenine-specific DNA methyltransferase 2 (AHRD V1 ***- C1C3V5_RANCA); contains Interpro domain(s) IPR019369 N-6 adenine-specific DNA methylase-related, eukaryotic "; GO:0032259 NbS00034019g0004.1 protein AED:0.21 eAED:0.22 QI:0|0.96|0.93|1|0.96|0.93|32|581|1117; (*GB) gi|225439303|ref|XP_002267555.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.1 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116;; (*ITAG) Solyc10g081610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00007529g0009.1 protein AED:0.02 eAED:0.02 QI:126|1|1|1|1|1|2|265|216; (*GB) gi|255547391|ref|XP_002514753.1| (e_value=7e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62440.1 (e_value=3e-54) | Symbols: | Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202;; (*ITAG) Solyc03g116020.2.1 (e_value=6e-76) genomic_reference:SL2.40ch03 gene_region:59602755-59604468 transcript_region:SL2.40ch03:59602755..59604468- functional_description:"DNA-directed RNA polymerase (AHRD V1 *--- B9RC12_RICCO)"; NbS00007529g0006.1 protein AED:0.01 eAED:0.03 QI:0|0.66|0.25|1|1|1|4|0|302; (*GB) gi|225457411|ref|XP_002282066.1| (e_value=5e-72) PREDICTED: protein RKD2-like [Vitis vinifera];; (*SWP) sp|Q9M9U9|RKD1_ARATH (e_value=5e-46) Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1;; (*TAIR) AT1G18790.1 (e_value=4e-47) | Symbols: | RWP-RK domain-containing protein | chr1:6478851-6480043 REVERSE LENGTH=269;; (*ITAG) Solyc03g116010.1.1 (e_value=3e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59599834-59601280 transcript_region:SL2.40ch03:59599834..59601280- functional_description:"RWP-RK domain-containing protein (AHRD V1 *-*- D7KS24_ARALY); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00007529g0002.1 protein AED:0.36 eAED:0.36 QI:557|0.66|0.75|1|0.33|0.5|4|254|101 NbS00038435g0004.1 protein AED:0.12 eAED:0.12 QI:96|1|1|1|0.5|0.4|5|210|516; (*GB) gi|85068668|gb|ABC69414.1| (e_value=0.0) CYP72A57 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g052070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57946996-57950630 transcript_region:SL2.40ch07:57946996..57950630+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044406g0002.1 protein AED:0.44 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|144 NbS00039082g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|708; (*GB) gi|225436612|ref|XP_002275537.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Vitis vinifera];; (*SWP) sp|O04659|PP398_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2;; (*TAIR) AT5G27110.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9538572-9540647 REVERSE LENGTH=691;; (*ITAG) Solyc02g011680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:4611745-4614036 transcript_region:SL2.40ch02:4611745..4614036+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M697_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00039082g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|32402436|gb|AAN52800.1| (e_value=1e-29) MADS-box protein AGL62 [Arabidopsis thaliana];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=3e-29) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=3e-30) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00017175g0002.1 protein AED:0.40 eAED:0.41 QI:0|0.33|0|1|1|1|4|0|213; (*GB) gi|329025150|gb|AEB71558.1| (e_value=1e-103) synaptobrevin/VAMP-like protein [Solanum chacoense];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=4e-104) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=3e-105) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=4e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00055674g0012.1 protein AED:0.23 eAED:0.23 QI:431|1|1|1|0.8|0.90|11|320|323; (*GB) gi|224107655|ref|XP_002314551.1| (e_value=7e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|P28643|FABG_CUPLA (e_value=2e-142) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1;; (*TAIR) AT1G24360.1 (e_value=2e-128) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc05g014560.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8402493-8406263 transcript_region:SL2.40ch05:8402493..8406263- go_terms:GO:0004303 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0004303 NbS00055674g0005.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.25|1|1|4|0|92; (*ITAG) Solyc05g014550.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:8400556-8401305 transcript_region:SL2.40ch05:8400556..8401305- go_terms:GO:0016021 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *-*- Q5IRD2_9ROSI); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00055674g0011.1 protein AED:0.25 eAED:0.28 QI:178|0.73|0.62|1|0.6|0.62|16|0|653; (*GB) gi|225425850|ref|XP_002265789.1| (e_value=0.0) PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera];; (*SWP) sp|Q14181|DPOA2_HUMAN (e_value=6e-28) DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2;; (*TAIR) AT1G67630.1 (e_value=0.0) | Symbols: POLA2 | DNA polymerase alpha 2 | chr1:25344573-25348287 REVERSE LENGTH=620;; (*ITAG) Solyc05g014540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8393207-8399132 transcript_region:SL2.40ch05:8393207..8399132+ go_terms:GO:0046982 functional_description:"DNA polymerase alpha subunit B family (AHRD V1 ***- D7KVM0_ARALY); contains Interpro domain(s) IPR016722 DNA polymerase alpha, subunit B "; GO:0046982 NbS00009874g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|173; (*GB) gi|2894120|emb|CAA06000.1| (e_value=2e-28) extensin-like protein [Solanum tuberosum];; (*ITAG) Solyc05g053960.2.1 (e_value=1e-39) genomic_reference:SL2.40ch05 gene_region:63115904-63122815 transcript_region:SL2.40ch05:63115904..63122815- functional_description:"Cysteine-rich extensin-like protein-2 (AHRD V1 *-*- Q08195_TOBAC)"; NbS00011492g0006.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|589; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=2e-45) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc11g071640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52141513-52144602 transcript_region:SL2.40ch11:52141513..52144602+ go_terms:GO:0008810 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0008810 NbS00011492g0009.1 protein AED:0.17 eAED:0.17 QI:370|1|1|1|0.87|0.77|9|491|212; (*GB) gi|2500047|sp|Q43187.1|IPYR_SOLTU (e_value=9e-144) RecName: Full=Soluble inorganic pyrophosphatase; AltName: Full=Pyrophosphate phospho-hydrolase; Short=PPase;; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=3e-145) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT1G01050.1 (e_value=2e-137) | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31382-32670 REVERSE LENGTH=212;; (*ITAG) Solyc12g055830.1.1 (e_value=7e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47184732-47187107 transcript_region:SL2.40ch12:47184732..47187107- go_terms:GO:0005737 functional_description:"Inorganic pyrophosphatase (AHRD V1 ***- D1MVT0_BRARC); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0005737 NbS00011492g0004.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=2e-43) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*TAIR) AT5G20950.2 (e_value=9e-24) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc11g071640.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52141513-52144602 transcript_region:SL2.40ch11:52141513..52144602+ go_terms:GO:0008810 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0008810 NbS00054246g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.66|1|1|1|3|398|213; (*GB) gi|255571020|ref|XP_002526461.1| (e_value=5e-112) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q4VY51|SYM8_PEA (e_value=1e-108) Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3;; (*TAIR) AT5G49960.1 (e_value=9e-106) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc03g059160.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:25212208-25219003 transcript_region:SL2.40ch03:25212208..25219003+ functional_description:"CASTOR protein (Fragment) (AHRD V1 ***- Q1A3R7_SOYBN)"; NbS00054246g0008.1 protein AED:0.26 eAED:0.26 QI:649|0.83|0.85|1|0.5|0.71|7|0|268; (*GB) gi|19568098|gb|AAL89456.1| (e_value=5e-163) osmotic stress-activated protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9C958|SRK2B_ARATH (e_value=1e-151) Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1;; (*TAIR) AT1G60940.2 (e_value=1e-152) | Symbols: SNRK2-10, SNRK2.10, SRK2B | SNF1-related protein kinase 2.10 | chr1:22439398-22441896 REVERSE LENGTH=361;; (*ITAG) Solyc01g103940.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:84178144-84182461 transcript_region:SL2.40ch01:84178144..84182461+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00000767g0012.1 protein AED:0.14 eAED:0.14 QI:174|1|1|1|0.75|0.6|5|326|242; (*GB) gi|147809484|emb|CAN60148.1| (e_value=1e-141) hypothetical protein VITISV_041925 [Vitis vinifera];; (*SWP) sp|P46209|USF_AQUPY (e_value=2e-20) Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1;; (*TAIR) AT2G32520.1 (e_value=3e-139) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:13805823-13807442 REVERSE LENGTH=239;; (*ITAG) Solyc05g043430.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:55518806-55524126 transcript_region:SL2.40ch05:55518806..55524126- go_terms:GO:0016787 functional_description:"Carboxymethylenebutenolidase-like protein (AHRD V1 ***- Q8LQS5_ORYSJ); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0016787 NbS00030490g0003.1 protein AED:0.40 eAED:0.40 QI:0|0|0.33|0.66|0|0|3|424|70 NbS00030132g0010.1 protein AED:0.18 eAED:0.18 QI:101|1|1|1|1|1|21|374|790; (*GB) gi|225457538|ref|XP_002270499.1| (e_value=0.0) PREDICTED: pre-rRNA-processing protein TSR1 homolog [Vitis vinifera];; (*SWP) sp|Q5XGY1|TSR1_XENLA (e_value=7e-156) Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1;; (*TAIR) AT1G42440.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). | chr1:15895528-15899939 REVERSE LENGTH=793;; (*ITAG) Solyc04g082330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63629294-63637973 transcript_region:SL2.40ch04:63629294..63637973- go_terms:GO:0005515 functional_description:"Pre-rRNA-processing protein TSR1 (AHRD V1 *-*- D0MZI1_PHYIN); contains Interpro domain(s) IPR007034 Protein of unknown function DUF663 "; GO:0005515 NbS00030132g0014.1 protein AED:0.21 eAED:0.21 QI:88|1|1|1|0.92|0.85|14|449|756; (*GB) gi|298111984|gb|ADI58371.1| (e_value=0.0) pentatricopeptide repeat-containing protein [Capsicum annuum];; (*SWP) sp|Q9SGQ6|PP126_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2;; (*TAIR) AT1G76280.3 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28617948-28622581 REVERSE LENGTH=801;; (*ITAG) Solyc04g082320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63619395-63628091 transcript_region:SL2.40ch04:63619395..63628091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7RNT7_CAPAN); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00030132g0003.1 protein AED:0.37 eAED:0.37 QI:198|0.33|0.28|1|1|1|7|0|303; (*GB) gi|388505220|gb|AFK40676.1| (e_value=3e-135) unknown [Lotus japonicus];; (*SWP) sp|O80934|Y2766_ARATH (e_value=8e-132) Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2;; (*TAIR) AT2G37660.1 (e_value=6e-133) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:15795481-15796977 REVERSE LENGTH=325;; (*ITAG) Solyc09g010930.2.1 (e_value=6e-143) genomic_reference:SL2.40ch09 gene_region:4264025-4269432 transcript_region:SL2.40ch09:4264025..4269432- go_terms:GO:0005507 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- B6T962_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005507 NbS00010765g0008.1 protein AED:0.17 eAED:0.17 QI:25|0.75|0.69|1|0.58|0.69|13|156|412; (*GB) gi|255585271|ref|XP_002533335.1| (e_value=0.0) Protein MLO, putative [Ricinus communis];; (*SWP) sp|O49621|MLO1_ARATH (e_value=0.0) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=0.0) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc08g015870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6074040-6078983 transcript_region:SL2.40ch08:6074040..6078983- go_terms:GO:0016021 functional_description:"MLO-like protein 7 (AHRD V1 ***- C6EWE8_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010765g0005.1 protein AED:0.19 eAED:0.19 QI:342|0.90|0.91|1|1|1|12|439|423; (*GB) gi|2501850|gb|AAB80717.1| (e_value=0.0) GDP dissociation inhibitor [Nicotiana tabacum];; (*SWP) sp|P21856|GDIA_BOVIN (e_value=1e-172) Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G59920.1 (e_value=0.0) | Symbols: ATGDI2, GDI2 | RAB GDP dissociation inhibitor 2 | chr3:22135157-22138221 FORWARD LENGTH=444;; (*ITAG) Solyc08g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6067525-6073836 transcript_region:SL2.40ch08:6067525..6073836+ go_terms:GO:0005093,GO:0031267 functional_description:"Rab GDP dissociation inhibitor (AHRD V1 **** C0LSK7_NICBE); contains Interpro domain(s) IPR000806 Rab GDI protein "; GO:0005093,GO:0031267 NbS00010765g0103.1 protein AED:0.28 eAED:0.28 QI:0|0.37|0.22|0.88|1|1|9|0|285 NbS00010765g0111.1 protein AED:0.28 eAED:0.28 QI:246|1|1|1|0.87|0.77|9|180|231 NbS00023810g0002.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|106 NbS00019071g0005.1 protein AED:0.19 eAED:0.19 QI:359|0.6|0.66|1|0.6|0.5|6|0|288; (*GB) gi|359484449|ref|XP_002278441.2| (e_value=5e-74) PREDICTED: nuclear transcription factor Y subunit A-3-like [Vitis vinifera];; (*SWP) sp|Q9LVJ7|NFYA6_ARATH (e_value=3e-31) Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1;; (*TAIR) AT3G14020.1 (e_value=2e-32) | Symbols: NF-YA6 | nuclear factor Y, subunit A6 | chr3:4642968-4644301 FORWARD LENGTH=308;; (*ITAG) Solyc12g009050.1.1 (e_value=1e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2340487-2342273 transcript_region:SL2.40ch12:2340487..2342273- go_terms:GO:0005634,GO:0016602 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 *-*- B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634,GO:0016602 NbS00045343g0001.1 protein AED:0.21 eAED:0.21 QI:397|0.75|0.70|0.94|1|1|17|0|728; (*GB) gi|225439247|ref|XP_002271330.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|Q8GYB4|CAAT3_ARATH (e_value=0.0) Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1;; (*TAIR) AT5G36940.1 (e_value=0.0) | Symbols: CAT3 | cationic amino acid transporter 3 | chr5:14590330-14594137 FORWARD LENGTH=609;; (*ITAG) Solyc10g081460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61835895-61843695 transcript_region:SL2.40ch10:61835895..61843695- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C3GEP6_BACTU); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00052473g0003.1 protein AED:0.37 eAED:0.43 QI:0|0|0.5|1|0|0.5|2|7|29 NbS00007853g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|359481819|ref|XP_002283419.2| (e_value=2e-102) PREDICTED: MATE efflux family protein 1 [Vitis vinifera];; (*SWP) sp|Q9LTF4|PP429_ARATH (e_value=3e-86) Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1;; (*TAIR) AT5G52630.1 (e_value=2e-87) | Symbols: MEF1 | mitochondrial RNAediting factor 1 | chr5:21350375-21352141 FORWARD LENGTH=588;; (*ITAG) Solyc03g063690.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:32891552-32893342 transcript_region:SL2.40ch03:32891552..32893342+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MS71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00007853g0006.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|0|0|3|0|298; (*GB) gi|356570490|ref|XP_003553418.1| (e_value=5e-149) PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630-like [Glycine max];; (*SWP) sp|Q9LTF4|PP429_ARATH (e_value=1e-144) Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1;; (*TAIR) AT5G52630.1 (e_value=8e-146) | Symbols: MEF1 | mitochondrial RNAediting factor 1 | chr5:21350375-21352141 FORWARD LENGTH=588;; (*ITAG) Solyc03g063690.1.1 (e_value=3e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:32891552-32893342 transcript_region:SL2.40ch03:32891552..32893342+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MS71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00027246g0003.1 protein AED:0.42 eAED:0.56 QI:0|0|0.14|0.85|0.66|0.71|7|0|207; (*GB) gi|15231006|ref|NP_188632.1| (e_value=5e-80) phytochrome-associated serine/threonine protein phosphatase 3 [Arabidopsis thaliana];; (*SWP) sp|Q9LHE7|FYPP3_ARATH (e_value=1e-81) Phytochrome-associated serine/threonine-protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1;; (*TAIR) AT3G19980.1 (e_value=1e-82) | Symbols: ATFYPP3, EMB2736, STPP, FYPP3 | flower-specific, phytochrome-associated protein phosphatase 3 | chr3:6962008-6964761 FORWARD LENGTH=303;; (*ITAG) Solyc06g072140.2.1 (e_value=6e-83) genomic_reference:SL2.40ch06 gene_region:40853594-40859862 transcript_region:SL2.40ch06:40853594..40859862+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** C6TK28_SOYBN); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00041676g0004.1 protein AED:0.19 eAED:0.19 QI:224|1|1|1|1|1|6|268|420; (*GB) gi|224103675|ref|XP_002313150.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XR61|MTK1_ORYSJ (e_value=0.0) Methylthioribose kinase 1 OS=Oryza sativa subsp. japonica GN=MTK1 PE=2 SV=1;; (*TAIR) AT1G49820.1 (e_value=0.0) | Symbols: ATMTK, MTK | S-methyl-5-thioribose kinase | chr1:18443005-18444907 FORWARD LENGTH=420;; (*ITAG) Solyc01g107550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86812833-86817305 transcript_region:SL2.40ch01:86812833..86817305- go_terms:GO:0046522 functional_description:"Methylthioribose kinase (AHRD V1 **** Q6PMT1_ORYSJ); contains Interpro domain(s) IPR009212 Methylthioribose kinase "; GO:0046522 NbS00030195g0005.1 protein AED:0.21 eAED:0.21 QI:388|1|0.8|1|0.88|0.9|10|0|881; (*GB) gi|356525878|ref|XP_003531548.1| (e_value=0.0) PREDICTED: potassium transporter 7-like [Glycine max];; (*SWP) sp|Q9FY75|POT7_ARATH (e_value=0.0) Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2;; (*TAIR) AT5G09400.1 (e_value=0.0) | Symbols: KUP7 | K+ uptake permease 7 | chr5:2916377-2920604 FORWARD LENGTH=858;; (*ITAG) Solyc10g047270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35783789-35806046 transcript_region:SL2.40ch10:35783789..35806046+ go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00056159g0007.1 protein AED:0.09 eAED:0.10 QI:0|0.6|0.45|0.90|0.9|0.81|11|0|606; (*GB) gi|307136044|gb|ADN33896.1| (e_value=0.0) NADH dehydrogenase [Cucumis melo subsp. melo];; (*SWP) sp|P40215|NDH1_YEAST (e_value=1e-71) External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1;; (*TAIR) AT4G21490.1 (e_value=0.0) | Symbols: NDB3 | NAD(P)H dehydrogenase B3 | chr4:11436495-11439326 REVERSE LENGTH=580;; (*ITAG) Solyc07g054670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60243560-60247429 transcript_region:SL2.40ch07:60243560..60247429+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00056159g0002.1 protein AED:0.10 eAED:0.10 QI:289|0.33|0.75|1|0|0.25|4|767|354; (*GB) gi|224059682|ref|XP_002299968.1| (e_value=2e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5BIV3|PPR35_ARATH (e_value=7e-82) Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1;; (*TAIR) AT1G11900.1 (e_value=5e-83) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4013166-4014630 REVERSE LENGTH=367;; (*ITAG) Solyc07g054680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60248276-60250658 transcript_region:SL2.40ch07:60248276..60250658- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027945g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|116789296|gb|ABK25191.1| (e_value=1e-38) unknown [Picea sitchensis];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=5e-36) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=4e-37) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc03g083270.2.1 (e_value=4e-39) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00029595g0007.1 protein AED:0.15 eAED:0.15 QI:167|0.91|0.92|1|0.75|0.76|13|345|413; (*GB) gi|255585902|ref|XP_002533624.1| (e_value=7e-168) kinase, putative [Ricinus communis];; (*SWP) sp|P36945|RBSK_BACSU (e_value=2e-17) Ribokinase OS=Bacillus subtilis (strain 168) GN=rbsK PE=3 SV=2;; (*TAIR) AT4G28706.1 (e_value=1e-167) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:14167805-14170619 FORWARD LENGTH=401;; (*ITAG) Solyc08g078370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59360722-59365482 transcript_region:SL2.40ch08:59360722..59365482- go_terms:GO:0005515 functional_description:"Kinase pfkB family protein (AHRD V1 **-- Q7XDM4_ORYSJ); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00060270g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|225445023|ref|XP_002283114.1| (e_value=2e-137) PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera];; (*SWP) sp|O82199|C3H20_ARATH (e_value=2e-109) Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1;; (*TAIR) AT2G19810.1 (e_value=1e-110) | Symbols: | CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359;; (*ITAG) Solyc12g008660.1.1 (e_value=4e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00003186g0006.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0|1|0|0.66|3|0|248; (*GB) gi|225423901|ref|XP_002278787.1| (e_value=2e-114) PREDICTED: protein TRANSPARENT TESTA 1-like [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=3e-81) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT1G13290.1 (e_value=1e-101) | Symbols: DOT5, WIP6 | C2H2-like zinc finger protein | chr1:4550366-4551527 REVERSE LENGTH=302;; (*ITAG) Solyc05g009770.1.1 (e_value=3e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3967598-3969256 transcript_region:SL2.40ch05:3967598..3969256+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KQE1_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00003186g0001.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|1|1|3|0|326; (*GB) gi|194475604|gb|ACF74549.1| (e_value=0.0) RAV [Nicotiana tabacum];; (*SWP) sp|Q9ZWM9|RAV1_ARATH (e_value=7e-133) AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1;; (*TAIR) AT1G13260.1 (e_value=5e-134) | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542386-4543420 FORWARD LENGTH=344;; (*ITAG) Solyc05g009790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3987084-3988271 transcript_region:SL2.40ch05:3987084..3988271- go_terms:GO:0003677,GO:0016564 functional_description:"Transcription factor (AHRD V1 *-** D6MKM9_9ASPA); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00003186g0007.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0|0.33|3|0|182; (*GB) gi|190607705|gb|ACE79511.1| (e_value=4e-34) NBS-coding resistance gene analog [Nicotiana tabacum];; (*ITAG) Solyc06g008790.2.1 (e_value=1e-33) genomic_reference:SL2.40ch06 gene_region:2722296-2726237 transcript_region:SL2.40ch06:2722296..2726237+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00003186g0008.1 protein AED:0.42 eAED:0.65 QI:0|0|0|1|0|0|2|0|60 NbS00018064g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.91|0.87|1|0.82|0.83|24|0|1701; (*GB) gi|225431924|ref|XP_002277060.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera];; (*SWP) sp|Q9NSI6|BRWD1_HUMAN (e_value=5e-75) Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4;; (*TAIR) AT5G49430.1 (e_value=0.0) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr5:20037338-20045454 REVERSE LENGTH=1677;; (*ITAG) Solyc01g060040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62265462-62270575 transcript_region:SL2.40ch01:62265462..62270575- go_terms:GO:0000166 functional_description:"Bromodomain and WD repeat-containing protein 1 (Predicted) (AHRD V1 *-*- B4USY4_OTOGA); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0000166 NbS00018064g0002.1 protein AED:0.33 eAED:0.33 QI:58|-1|0|1|-1|1|1|0|117 NbS00001727g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|363; (*GB) gi|225465688|ref|XP_002272694.1| (e_value=3e-167) PREDICTED: uncharacterized protein LOC100251105 [Vitis vinifera];; (*TAIR) AT5G23200.1 (e_value=4e-151) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7807319-7808988 FORWARD LENGTH=399;; (*ITAG) Solyc04g078160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60563520-60566989 transcript_region:SL2.40ch04:60563520..60566989+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD15 (AHRD V1 ***- Q9FMY0_ARATH)"; NbS00001727g0015.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0.5|0.33|3|0|586; (*GB) gi|225458780|ref|XP_002283265.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267728 [Vitis vinifera];; (*SWP) sp|Q99614|TTC1_HUMAN (e_value=3e-14) Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1;; (*TAIR) AT5G43120.1 (e_value=0.0) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:17312602-17314368 FORWARD LENGTH=588;; (*ITAG) Solyc04g078170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001727g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.25|0.75|1|1|4|0|444; (*GB) gi|225458778|ref|XP_002285118.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252320 [Vitis vinifera];; (*TAIR) AT1G49840.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr1:18452243-18454157 FORWARD LENGTH=494;; (*ITAG) Solyc01g107350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86675216-86677739 transcript_region:SL2.40ch01:86675216..86677739- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00001727g0010.1 protein AED:0.39 eAED:0.39 QI:148|0.5|0.33|1|0.5|0.66|3|136|101; (*ITAG) Solyc04g078150.2.1 (e_value=2e-17) genomic_reference:SL2.40ch04 gene_region:60560319-60564674 transcript_region:SL2.40ch04:60560319..60564674- functional_description:"Unknown Protein (AHRD V1)"; NbS00011536g0013.1 protein AED:0.11 eAED:0.11 QI:279|1|1|1|0.75|0.6|5|1566|315; (*GB) gi|225464834|ref|XP_002271014.1| (e_value=2e-107) PREDICTED: nuclear speckle splicing regulatory protein 1 [Vitis vinifera];; (*SWP) sp|Q568R1|NSRP1_DANRE (e_value=2e-22) Nuclear speckle splicing regulatory protein 1 OS=Danio rerio GN=nsrp1 PE=1 SV=2;; (*TAIR) AT2G27285.1 (e_value=9e-88) | Symbols: | Coiled-coil domain-containing protein 55 (DUF2040) | chr2:11676079-11677897 REVERSE LENGTH=323;; (*ITAG) Solyc11g068870.1.1 (e_value=4e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50533811-50537563 transcript_region:SL2.40ch11:50533811..50537563+ functional_description:"Coiled-coil domain containing 55 (AHRD V1 ***- B6TD70_MAIZE); contains Interpro domain(s) IPR018612 Protein of unknown function DUF2040, coiled-coil "; NbS00011536g0009.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.8|1|1|5|0|178; (*GB) gi|147866226|emb|CAN79938.1| (e_value=6e-46) hypothetical protein VITISV_027777 [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=5e-13) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G52500.1 (e_value=1e-42) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:19465644-19467053 REVERSE LENGTH=469;; (*ITAG) Solyc06g074000.1.1 (e_value=2e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42131696-42133081 transcript_region:SL2.40ch06:42131696..42133081- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00011536g0014.1 protein AED:0.20 eAED:0.20 QI:787|1|0.85|1|1|0.85|7|0|476; (*GB) gi|9255873|gb|AAF86340.1|AF277455_1 (e_value=0.0) UMP synthase [Nicotiana plumbaginifolia];; (*SWP) sp|Q42942|UMPS_TOBAC (e_value=0.0) Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum GN=PYR5-6 PE=2 SV=1;; (*TAIR) AT3G54470.1 (e_value=0.0) | Symbols: | uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) | chr3:20168285-20170245 REVERSE LENGTH=476;; (*ITAG) Solyc11g068830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50519655-50524370 transcript_region:SL2.40ch11:50519655..50524370+ go_terms:GO:0004588,GO:0004590 functional_description:"Orotidine 5&apos-phosphate decarboxylase (Orotate phosphoribosyltransferase) (AHRD V1 **** C4QAV6_SCHMA); contains Interpro domain(s) IPR001754 Orotidine 5'-phosphate decarboxylase, core "; GO:0004588,GO:0004590 NbS00023680g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.93|0.93|1|0.86|0.87|16|775|584; (*GB) gi|224109192|ref|XP_002315117.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=0.0) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=0.0) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc11g008580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2764823-2775320 transcript_region:SL2.40ch11:2764823..2775320- go_terms:GO:0008270,GO:0005622 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270,GO:0005622 NbS00023680g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.4|1|0.5|0.4|5|0|755; (*GB) gi|224112409|ref|XP_002316178.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WVZ1|Y3330_ARATH (e_value=0.0) Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana GN=At3g03305 PE=2 SV=1;; (*TAIR) AT3G03305.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:775504-778271 REVERSE LENGTH=743;; (*ITAG) Solyc11g008570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2758333-2763542 transcript_region:SL2.40ch11:2758333..2763542+ go_terms:GO:0016787 functional_description:"Calcineurin-related phosphoesterase-like (AHRD V1 **-- Q5JLV7_ORYSJ); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00001137g0004.1 protein AED:0.26 eAED:0.32 QI:0|0.71|0.5|1|0.57|0.62|8|0|439; (*GB) gi|224097868|ref|XP_002311086.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91YQ5|RPN1_MOUSE (e_value=2e-60) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1;; (*TAIR) AT2G01720.1 (e_value=3e-180) | Symbols: | Ribophorin I | chr2:317193-320016 REVERSE LENGTH=464;; (*ITAG) Solyc05g056130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64671484-64678342 transcript_region:SL2.40ch05:64671484..64678342- go_terms:GO:0005515,GO:0004576 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 ***- C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I "; GO:0005515,GO:0004576 NbS00033269g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|255550908|ref|XP_002516502.1| (e_value=1e-64) Transcriptional factor TINY, putative [Ricinus communis];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=8e-56) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=6e-57) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g066660.1.1 (e_value=6e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52686293-52686949 transcript_region:SL2.40ch08:52686293..52686949- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbC25915270g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|41 NbS00007739g0006.1 protein AED:0.34 eAED:0.78 QI:6|0|0.5|1|0|0.5|2|53|43 NbS00007739g0117.1 protein AED:0.20 eAED:0.30 QI:217|0.84|0.85|1|0.84|0.78|14|0|506 NbS00007739g0119.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|210 NbS00007739g0120.1 protein AED:0.51 eAED:0.52 QI:0|0|0|1|0|0|2|0|70 NbS00023025g0002.1 protein AED:0.00 eAED:0.00 QI:379|1|0.66|1|0|0|3|0|215; (*GB) gi|225438426|ref|XP_002276373.1| (e_value=9e-114) PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera];; (*SWP) sp|Q9SD00|MSSP3_ARATH (e_value=7e-111) Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1;; (*TAIR) AT3G51490.1 (e_value=5e-112) | Symbols: TMT3 | tonoplast monosaccharide transporter3 | chr3:19105018-19107562 REVERSE LENGTH=729;; (*ITAG) Solyc03g032040.2.1 (e_value=7e-132) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00011255g0001.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|923; (*GB) gi|225424494|ref|XP_002281730.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Vitis vinifera];; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=0.0) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1;; (*TAIR) AT2G01950.1 (e_value=0.0) | Symbols: VH1, BRL2 | BRI1-like 2 | chr2:440805-444236 REVERSE LENGTH=1143;; (*ITAG) Solyc04g008430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2048594-2051974 transcript_region:SL2.40ch04:2048594..2051974- go_terms:GO:0042802 functional_description:"Receptor like kinase, RLK"; GO:0042802 NbS00011255g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|1|0|0|4|0|137; (*ITAG) Solyc01g005040.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:55810-56888 transcript_region:SL2.40ch01:55810..56888+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00011255g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|221; (*GB) gi|225424494|ref|XP_002281730.1| (e_value=2e-137) PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Vitis vinifera];; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=1e-117) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1;; (*TAIR) AT2G01950.1 (e_value=9e-119) | Symbols: VH1, BRL2 | BRI1-like 2 | chr2:440805-444236 REVERSE LENGTH=1143;; (*ITAG) Solyc04g008430.1.1 (e_value=3e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2048594-2051974 transcript_region:SL2.40ch04:2048594..2051974- go_terms:GO:0042802 functional_description:"Receptor like kinase, RLK"; GO:0042802 NbS00025947g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|549; (*GB) gi|75147309|sp|Q84N38.1|PVIP_NICBE (e_value=0.0) RecName: Full=OBERON-like protein; AltName: Full=Potyvirus VPg-interacting protein; Short=PVIPnb;; (*SWP) sp|Q84N38|PVIP_NICBE (e_value=0.0) OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1;; (*TAIR) AT5G48160.2 (e_value=0.0) | Symbols: OBE2 | Protein of unknown function (DUF1423) | chr5:19528019-19529820 REVERSE LENGTH=574;; (*ITAG) Solyc05g054180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63284096-63288543 transcript_region:SL2.40ch05:63284096..63288543+ go_terms:GO:0008270 functional_description:"Potyvirus VPg interacting protein (AHRD V1 **-- B0ZZ79_ARAHY); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; GO:0008270 NbS00025372g0005.1 protein AED:0.14 eAED:0.14 QI:189|0.9|1|1|1|1|11|249|477; (*GB) gi|350537433|ref|NP_001234549.1| (e_value=0.0) phosphoethanolamine N-methyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9M571|PEAMT_SPIOL (e_value=0.0) Phosphoethanolamine N-methyltransferase OS=Spinacia oleracea GN=PEAMT PE=1 SV=1;; (*TAIR) AT3G18000.1 (e_value=0.0) | Symbols: NMT1, XPL1, PEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491;; (*ITAG) Solyc06g068950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39165315-39169235 transcript_region:SL2.40ch06:39165315..39169235+ go_terms:GO:0000234 functional_description:"Phosphoethanolamine N-methyltransferase (AHRD V1 **** Q9AXH3_SOLLC); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0000234 NbS00003866g0004.1 protein AED:0.25 eAED:0.31 QI:0|0.81|0.70|0.94|0.75|0.70|17|0|1053; (*GB) gi|255560611|ref|XP_002521319.1| (e_value=0.0) Exportin-T, putative [Ricinus communis];; (*SWP) sp|Q7PC79|XPOT_ARATH (e_value=0.0) Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1;; (*TAIR) AT1G72560.3 (e_value=0.0) | Symbols: PSD | ARM repeat superfamily protein | chr1:27325026-27329467 REVERSE LENGTH=988;; (*ITAG) Solyc03g122370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64287121-64295654 transcript_region:SL2.40ch03:64287121..64295654- go_terms:GO:0015932,GO:0000049 functional_description:"Exportin-t (AHRD V1 ***- Q7PC79_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0015932,GO:0000049 NbS00027465g0001.1 protein AED:0.29 eAED:0.31 QI:0|0.85|0.5|1|1|1|8|0|472; (*GB) gi|225450661|ref|XP_002282985.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 5 [Vitis vinifera];; (*SWP) sp|O80492|P2C05_ARATH (e_value=0.0) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00025084g0007.1 protein AED:0.10 eAED:0.10 QI:70|0.8|0.83|1|0.8|0.83|6|433|396; (*GB) gi|297735616|emb|CBI18110.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01620.2 (e_value=0.0) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 35 | chr5:232882-234821 FORWARD LENGTH=449;; (*ITAG) Solyc10g085320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63867300-63871204 transcript_region:SL2.40ch10:63867300..63871204+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00034513g0002.1 protein AED:0.14 eAED:0.14 QI:161|0|0.33|0.66|0|0.33|3|0|66 NbS00024687g0005.1 protein AED:0.05 eAED:0.08 QI:0|0|0|1|0.5|0.66|3|0|244; (*GB) gi|224104298|ref|XP_002313387.1| (e_value=6e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=2e-19) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=6e-25) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=8e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00024687g0004.1 protein AED:0.12 eAED:0.12 QI:604|1|1|1|0.54|0.75|12|444|387; (*GB) gi|356569556|ref|XP_003552965.1| (e_value=0.0) PREDICTED: GDP-mannose transporter GONST2-like [Glycine max];; (*SWP) sp|Q84L09|GONS2_ARATH (e_value=7e-179) GDP-mannose transporter GONST2 OS=Arabidopsis thaliana GN=GONST2 PE=2 SV=1;; (*TAIR) AT1G07290.1 (e_value=5e-180) | Symbols: GONST2 | golgi nucleotide sugar transporter 2 | chr1:2242284-2244428 REVERSE LENGTH=375;; (*ITAG) Solyc06g076830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44111877-44117724 transcript_region:SL2.40ch06:44111877..44117724+ go_terms:GO:0005458 functional_description:"GDP-mannose transporter (AHRD V1 **** C1H9D4_PARBA); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005458 NbS00022499g0003.1 protein AED:0.11 eAED:0.11 QI:48|0.88|0.8|1|0.55|0.5|10|113|610; (*GB) gi|359489252|ref|XP_002263787.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=7e-103) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc01g088400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00048392g0004.1 protein AED:0.07 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|301; (*GB) gi|255571750|ref|XP_002526818.1| (e_value=2e-118) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=1e-84) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G71930.1 (e_value=1e-107) | Symbols: VND7, ANAC030 | vascular related NAC-domain protein 7 | chr1:27076205-27077829 FORWARD LENGTH=324;; (*ITAG) Solyc11g018660.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8887768-8890395 transcript_region:SL2.40ch11:8887768..8890395+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MW79_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00007774g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|224103235|ref|XP_002312977.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=5e-33) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT3G50310.1 (e_value=1e-57) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc07g047910.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56433677-56437115 transcript_region:SL2.40ch07:56433677..56437115+ go_terms:GO:0005515,GO:0016301 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q8LCP0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00007774g0007.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|377; (*GB) gi|224103235|ref|XP_002312977.1| (e_value=5e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=8e-29) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=1e-52) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc07g047910.1.1 (e_value=2e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56433677-56437115 transcript_region:SL2.40ch07:56433677..56437115+ go_terms:GO:0005515,GO:0016301 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q8LCP0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00014269g0008.1 protein AED:0.03 eAED:0.03 QI:229|1|1|1|1|1|3|315|474; (*GB) gi|359493064|ref|XP_002270238.2| (e_value=0.0) PREDICTED: probable glucuronosyltransferase Os01g0926700-like [Vitis vinifera];; (*TAIR) AT1G34270.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:12492571-12494514 REVERSE LENGTH=477;; (*ITAG) Solyc11g013840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7257292-7262721 transcript_region:SL2.40ch11:7257292..7262721- go_terms:GO:0016020 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 *--- A8I7L6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00014269g0003.1 protein AED:0.29 eAED:0.29 QI:296|1|1|1|0|0|3|15|99; (*GB) gi|224135883|ref|XP_002327327.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71865.1 (e_value=2e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27030117-27030416 FORWARD LENGTH=99;; (*ITAG) Solyc11g013850.1.1 (e_value=5e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7263815-7264114 transcript_region:SL2.40ch11:7263815..7264114- functional_description:"Os01g0871350 protein (Fragment) (AHRD V1 ***- C7IXB2_ORYSJ)"; NbS00030004g0003.1 protein AED:0.09 eAED:0.09 QI:474|1|1|1|1|1|3|296|186; (*GB) gi|255582471|ref|XP_002532022.1| (e_value=1e-87) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G15480.1 (e_value=6e-76) | Symbols: | Protein of unknown function (DUF1218) | chr3:5226489-5227666 REVERSE LENGTH=175;; (*ITAG) Solyc07g063340.2.1 (e_value=5e-107) genomic_reference:SL2.40ch07 gene_region:63054493-63056714 transcript_region:SL2.40ch07:63054493..63056714- functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY3_SOLDU); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00056607g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|515; (*GB) gi|255586447|ref|XP_002533868.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|O70279|DGC14_MOUSE (e_value=6e-39) Protein DGCR14 OS=Mus musculus GN=Dgcr14 PE=2 SV=2;; (*TAIR) AT3G07790.1 (e_value=0.0) | Symbols: | DGCR14-related | chr3:2487491-2489017 FORWARD LENGTH=508;; (*ITAG) Solyc07g047980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56516157-56517689 transcript_region:SL2.40ch07:56516157..56517689+ go_terms:GO:0005515,GO:0004757 functional_description:"Es2 (Fragment) (AHRD V1 *--- A9YJX0_DROME); contains Interpro domain(s) IPR019148 Nuclear protein DGCR14 "; GO:0005515,GO:0004757 NbC26013506g0003.1 protein AED:0.40 eAED:0.40 QI:0|0.14|0|0.25|1|1|8|0|262; (*GB) gi|296085890|emb|CBI31214.3| (e_value=1e-60) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09360.1 (e_value=5e-38) | Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604;; (*ITAG) Solyc01g088720.2.1 (e_value=4e-104) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00004153g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.85|1|0.83|0.57|7|281|409; (*GB) gi|114324644|gb|ABI63627.1| (e_value=0.0) solanesyl diphosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q8S948|SPS1_ARATH (e_value=0.0) Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1;; (*TAIR) AT1G78510.1 (e_value=0.0) | Symbols: SPS1 | solanesyl diphosphate synthase 1 | chr1:29535410-29537163 REVERSE LENGTH=406;; (*ITAG) Solyc07g061990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62080839-62085428 transcript_region:SL2.40ch07:62080839..62085428- go_terms:GO:0050347 functional_description:"Solanesyl diphosphate synthase (AHRD V1 ***- Q09IV6_SOLLC); contains Interpro domain(s) IPR014120 Solanesyl diphosphate synthase "; GO:0050347 NbS00028325g0005.1 protein AED:0.11 eAED:0.16 QI:0|0.5|0.54|1|1|1|11|0|841; (*GB) gi|8885992|gb|AAF80332.1|AF157047_1 (e_value=0.0) putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica];; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT1G21980.1 (e_value=0.0) | Symbols: ATPIP5K1, ATPIPK1, PIP5K1 | phosphatidylinositol-4-phosphate 5-kinase 1 | chr1:7735053-7738309 FORWARD LENGTH=752;; (*ITAG) Solyc11g013180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6063092-6066929 transcript_region:SL2.40ch11:6063092..6066929- go_terms:GO:0046488,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0046488,GO:0016308 NbS00037405g0002.1 protein AED:0.31 eAED:0.50 QI:0|0|0|1|0|0|2|0|51; (*ITAG) Solyc12g098860.1.1 (e_value=3e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00048676g0011.1 protein AED:0.23 eAED:0.23 QI:215|0.75|0.6|1|0.5|0.8|5|0|331; (*GB) gi|6472585|dbj|BAA87058.1| (e_value=0.0) WIZZ [Nicotiana tabacum];; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=2e-61) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1;; (*TAIR) AT1G80840.1 (e_value=1e-62) | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302;; (*ITAG) Solyc06g068460.2.1 (e_value=7e-154) genomic_reference:SL2.40ch06 gene_region:38823797-38825771 transcript_region:SL2.40ch06:38823797..38825771+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 1 (AHRD V1 **** C0L2S0_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00048676g0008.1 protein AED:0.01 eAED:0.01 QI:88|1|1|1|0|0|2|255|164; (*GB) gi|224115788|ref|XP_002332057.1| (e_value=7e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80860.1 (e_value=3e-91) | Symbols: ATPLMT, PLMT | phospholipid N-methyltransferase | chr1:30388432-30389284 REVERSE LENGTH=164;; (*ITAG) Solyc06g068470.2.1 (e_value=2e-108) genomic_reference:SL2.40ch06 gene_region:38826533-38829788 transcript_region:SL2.40ch06:38826533..38829788- go_terms:GO:0080101,GO:0000773 functional_description:"N-methyltransferase (AHRD V1 **** D7KWM7_ARALY)"; GO:0080101,GO:0000773 NbS00048676g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|486|445; (*GB) gi|255543347|ref|XP_002512736.1| (e_value=0.0) RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q9S9N4|MRS21_ARATH (e_value=0.0) Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1;; (*TAIR) AT1G16010.3 (e_value=0.0) | Symbols: MGT2 | magnesium transporter 2 | chr1:5495462-5497082 REVERSE LENGTH=442;; (*ITAG) Solyc06g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38837659-38843313 transcript_region:SL2.40ch06:38837659..38843313- go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-1 (AHRD V1 **** MRS21_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00048676g0014.1 protein AED:0.36 eAED:0.43 QI:0|0.22|0|1|0.55|0.6|10|0|336; (*GB) gi|255543323|ref|XP_002512724.1| (e_value=6e-97) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G73060.1 (e_value=8e-99) | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27479027-27481258 FORWARD LENGTH=358;; (*ITAG) Solyc06g068480.2.1 (e_value=2e-110) genomic_reference:SL2.40ch06 gene_region:38831809-38837277 transcript_region:SL2.40ch06:38831809..38837277- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q01G24_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00062121g0004.1 protein AED:0.00 eAED:0.00 QI:36|1|0.5|1|1|1|2|0|282; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=2e-86) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=2e-57) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=1e-62) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00009089g0006.1 protein AED:0.05 eAED:0.13 QI:0|0.16|0.14|1|0.16|0|7|0|490; (*GB) gi|209954701|dbj|BAG80541.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SKC1|U74C1_ARATH (e_value=7e-67) UDP-glycosyltransferase 74C1 OS=Arabidopsis thaliana GN=UGT74C1 PE=2 SV=1;; (*TAIR) AT2G31790.1 (e_value=5e-68) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:13518269-13520167 FORWARD LENGTH=457;; (*ITAG) Solyc08g006410.2.1 (e_value=3e-161) genomic_reference:SL2.40ch08 gene_region:1011690-1013594 transcript_region:SL2.40ch08:1011690..1013594+ go_terms:GO:0080002 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 **** B6EWX8_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00051571g0011.1 protein AED:0.24 eAED:0.25 QI:0|0.62|0.44|0.77|0.87|0.88|9|0|302; (*GB) gi|18072805|emb|CAC80377.1| (e_value=2e-165) glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum];; (*SWP) sp|Q5R2J2|G3P_PELSI (e_value=6e-101) Glyceraldehyde-3-phosphate dehydrogenase OS=Pelodiscus sinensis GN=GAPDH PE=2 SV=1;; (*TAIR) AT1G16300.1 (e_value=1e-136) | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate dehydrogenase of plastid 2 | chr1:5574433-5577406 FORWARD LENGTH=420;; (*ITAG) Solyc10g005510.2.1 (e_value=4e-173) genomic_reference:SL2.40ch10 gene_region:417823-423467 transcript_region:SL2.40ch10:417823..423467- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q8VWN9_CAPAN); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00051571g0008.1 protein AED:0.32 eAED:0.33 QI:0|0.83|0.57|1|0.83|0.71|7|0|494; (*GB) gi|359494643|ref|XP_002263207.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Vitis vinifera];; (*SWP) sp|Q9SA27|RH36_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1;; (*TAIR) AT1G16280.1 (e_value=0.0) | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | chr1:5568482-5570487 REVERSE LENGTH=491;; (*ITAG) Solyc10g005520.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:426017-431988 transcript_region:SL2.40ch10:426017..431988- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase dbp8 (AHRD V1 ***- B6JZZ3_SCHJY); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00042177g0005.1 protein AED:0.01 eAED:0.01 QI:28|1|0.66|1|0.5|0.66|3|241|574; (*GB) gi|224074599|ref|XP_002304396.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45275.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:18334476-18337240 REVERSE LENGTH=570;; (*ITAG) Solyc08g074960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56264924-56268960 transcript_region:SL2.40ch08:56264924..56268960+ functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00038784g0003.1 protein AED:0.09 eAED:0.10 QI:0|1|0|1|1|1|2|0|656; (*GB) gi|255587441|ref|XP_002534272.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=1e-63) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT3G57830.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:21419778-21422320 FORWARD LENGTH=662;; (*ITAG) Solyc03g064010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:34594740-34598681 transcript_region:SL2.40ch03:34594740..34598681+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00005397g0008.1 protein AED:0.17 eAED:0.17 QI:280|0.90|0.90|1|0.90|0.90|22|300|856; (*GB) gi|225465253|ref|XP_002268311.1| (e_value=0.0) PREDICTED: dynamin-2B [Vitis vinifera];; (*SWP) sp|Q9LQ55|DRP2B_ARATH (e_value=0.0) Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2;; (*TAIR) AT1G59610.1 (e_value=0.0) | Symbols: ADL3, CF1, DRP2B, DL3 | dynamin-like 3 | chr1:21893413-21900780 FORWARD LENGTH=920;; (*ITAG) Solyc11g039650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:25081015-25107234 transcript_region:SL2.40ch11:25081015..25107234+ go_terms:GO:0005525 functional_description:"Dynamin-2A (AHRD V1 ***- B6UEQ3_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00008797g0004.1 protein AED:0.08 eAED:0.08 QI:341|0.75|0.4|1|0.25|0.4|5|0|311; (*GB) gi|359480559|ref|XP_003632492.1| (e_value=4e-123) PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q9FJX5|BT4_ARATH (e_value=2e-107) BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1;; (*TAIR) AT5G67480.1 (e_value=2e-108) | Symbols: BT4, ATBT4 | BTB and TAZ domain protein 4 | chr5:26931055-26932496 REVERSE LENGTH=372;; (*ITAG) Solyc02g092460.2.1 (e_value=8e-108) genomic_reference:SL2.40ch02 gene_region:48088459-48090055 transcript_region:SL2.40ch02:48088459..48090055+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- B5X432_SALSA); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00062067g0003.1 protein AED:0.46 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|70; (*GB) gi|388516279|gb|AFK46201.1| (e_value=1e-28) unknown [Lotus japonicus];; (*SWP) sp|Q4PSE8|P2C71_ARATH (e_value=5e-26) Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1;; (*TAIR) AT5G24940.1 (e_value=4e-27) | Symbols: | Protein phosphatase 2C family protein | chr5:8591407-8593601 REVERSE LENGTH=447;; (*ITAG) Solyc04g064500.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:54767606-54787723 transcript_region:SL2.40ch04:54767606..54787723+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8S8Z0_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00007355g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.86|0.81|1|0.66|0.81|16|310|765; (*GB) gi|225433588|ref|XP_002269672.1| (e_value=0.0) PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q9ZTS1|SYM_ORYSJ (e_value=0.0) Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2;; (*TAIR) AT4G13780.1 (e_value=0.0) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00009391g0003.1 protein AED:0.04 eAED:0.04 QI:235|1|1|1|1|1|3|292|125; (*GB) gi|255567218|ref|XP_002524590.1| (e_value=1e-21) metal ion binding protein, putative [Ricinus communis];; (*ITAG) Solyc07g056200.2.1 (e_value=5e-39) genomic_reference:SL2.40ch07 gene_region:61370659-61371619 transcript_region:SL2.40ch07:61370659..61371619- functional_description:"NBS-LRR class disease resistance protein (AHRD V1 **-- D5L9G6_ORYSI)"; NbC25913064g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|292; (*GB) gi|297741509|emb|CBI32641.3| (e_value=3e-170) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=4e-169) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=3e-170) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00013275g0004.1 protein AED:0.05 eAED:0.08 QI:0|1|0|1|0|0|2|0|127; (*GB) gi|255583504|ref|XP_002532510.1| (e_value=5e-66) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47910.2 (e_value=6e-65) | Symbols: CRR6 | chlororespiratory reduction 6 | chr2:19614963-19615559 FORWARD LENGTH=198;; (*ITAG) Solyc07g007280.2.1 (e_value=8e-77) genomic_reference:SL2.40ch07 gene_region:2009907-2013237 transcript_region:SL2.40ch07:2009907..2013237- functional_description:"Conserved domain protein (AHRD V1 **-- B4W2T4_9CYAN); contains Interpro domain(s) IPR014946 Protein of unknown function DUF1817 "; NbS00014867g0006.1 protein AED:0.31 eAED:0.60 QI:0|0.8|0.66|1|0.6|0.5|6|0|226; (*GB) gi|27728145|gb|AAN15317.1| (e_value=3e-126) isoamylase isoform 1 [Solanum tuberosum];; (*SWP) sp|O04196|ISOA1_ARATH (e_value=5e-104) Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1;; (*TAIR) AT2G39930.1 (e_value=4e-105) | Symbols: ISA1, ATISA1 | isoamylase 1 | chr2:16666078-16672183 FORWARD LENGTH=783;; (*ITAG) Solyc07g014590.2.1 (e_value=3e-127) genomic_reference:SL2.40ch07 gene_region:4925611-4940909 transcript_region:SL2.40ch07:4925611..4940909- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- A7BWG1_9GAMM); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00002385g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.55|1|1|1|9|0|424; (*GB) gi|255584586|ref|XP_002533019.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=3e-85) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT1G19630.1 (e_value=3e-90) | Symbols: CYP722A1 | cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476;; (*ITAG) Solyc04g071150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55668623-55672862 transcript_region:SL2.40ch04:55668623..55672862- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00002385g0011.1 protein AED:0.12 eAED:0.13 QI:246|0.62|0.22|0.88|0.62|0.22|9|0|647; (*GB) gi|224082428|ref|XP_002306690.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=5e-152) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=0.0) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc04g071140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55663674-55668653 transcript_region:SL2.40ch04:55663674..55668653+ go_terms:GO:0006468,GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0006468,GO:0019752,GO:0030170 NbS00027250g0005.1 protein AED:0.03 eAED:0.07 QI:63|0.4|0.16|1|0.8|0.66|6|0|686; (*ITAG) Solyc03g007880.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:2404362-2409402 transcript_region:SL2.40ch03:2404362..2409402- functional_description:"Unknown Protein (AHRD V1)"; NbS00022783g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.33|1|1|3|0|155; (*GB) gi|255563677|ref|XP_002522840.1| (e_value=2e-50) multidrug resistance protein 1, 2, putative [Ricinus communis];; (*SWP) sp|Q6YUU5|MDR_ORYSJ (e_value=2e-31) Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1;; (*TAIR) AT3G28380.1 (e_value=1e-30) | Symbols: PGP17 | P-glycoprotein 17 | chr3:10623742-10628201 REVERSE LENGTH=1240;; (*ITAG) Solyc07g064120.1.1 (e_value=6e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63619807-63625362 transcript_region:SL2.40ch07:63619807..63625362+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00044249g0012.1 protein AED:0.36 eAED:0.36 QI:0|1|1|1|0.76|0.92|14|253|467; (*GB) gi|224100425|ref|XP_002311871.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A2VD82|TTC38_XENLA (e_value=4e-25) Tetratricopeptide repeat protein 38 OS=Xenopus laevis GN=ttc38 PE=2 SV=1;; (*TAIR) AT1G27150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9429177-9432068 FORWARD LENGTH=468;; (*ITAG) Solyc05g006760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1385245-1391269 transcript_region:SL2.40ch05:1385245..1391269+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 38 (AHRD V1 ***- TTC38_XENTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00044249g0011.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0|2|0|653; (*GB) gi|225424867|ref|XP_002268965.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g18390 [Vitis vinifera];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-73) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G69910.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:26330166-26332076 FORWARD LENGTH=636;; (*ITAG) Solyc05g006770.2.1 (e_value=5e-99) genomic_reference:SL2.40ch05 gene_region:1391932-1394125 transcript_region:SL2.40ch05:1391932..1394125- functional_description:"Kinase family protein (AHRD V1 *-*- D7MVR5_ARALY)"; NbS00003526g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|659; (*GB) gi|224064386|ref|XP_002301450.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S8N4|Y2685_ARATH (e_value=0.0) Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana GN=At2g46850 PE=2 SV=1;; (*TAIR) AT2G46850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:19251083-19253313 FORWARD LENGTH=633;; (*ITAG) Solyc10g005140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:125748-128085 transcript_region:SL2.40ch10:125748..128085- go_terms:GO:0006468,GO:0031177 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468,GO:0031177 NbS00003526g0014.1 protein AED:0.10 eAED:0.10 QI:566|0.94|0.95|1|0.89|0.9|20|334|1906; (*GB) gi|379987676|gb|AFD22618.1| (e_value=0.0) dicer-like 1 protein, partial [Nicotiana attenuata];; (*SWP) sp|Q9SP32|DCL1_ARATH (e_value=0.0) Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2;; (*TAIR) AT1G01040.1 (e_value=0.0) | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1909;; (*ITAG) Solyc10g005130.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00003526g0110.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|266 NbS00012043g0008.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|1|1|2|299|103; (*GB) gi|356544482|ref|XP_003540679.1| (e_value=6e-36) PREDICTED: uncharacterized protein LOC100785292 [Glycine max];; (*TAIR) AT1G75250.1 (e_value=3e-31) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc01g109690.1.1 (e_value=3e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88340098-88340346 transcript_region:SL2.40ch01:88340098..88340346- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00012043g0007.1 protein AED:0.15 eAED:0.16 QI:404|0.83|0.85|1|1|1|7|452|461; (*GB) gi|225428454|ref|XP_002284113.1| (e_value=2e-130) PREDICTED: transcription factor bHLH63-like [Vitis vinifera];; (*SWP) sp|Q8GY61|BH063_ARATH (e_value=8e-53) Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1;; (*TAIR) AT4G34530.1 (e_value=6e-54) | Symbols: CIB1 | cryptochrome-interacting basic-helix-loop-helix 1 | chr4:16498466-16499946 FORWARD LENGTH=335;; (*ITAG) Solyc01g109700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88355753-88358914 transcript_region:SL2.40ch01:88355753..88358914+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00012043g0010.1 protein AED:0.30 eAED:0.65 QI:0|0|0|1|0|0|2|0|61 NbS00044060g0002.1 protein AED:0.45 eAED:0.47 QI:0|0|0|1|1|1|2|0|68; (*GB) gi|225453228|ref|XP_002264215.1| (e_value=1e-25) PREDICTED: ent-kaurenoic acid oxidase 1 [Vitis vinifera];; (*SWP) sp|Q9AXH9|KAO1_HORVU (e_value=1e-24) Ent-kaurenoic acid oxidase 1 OS=Hordeum vulgare GN=KAO1 PE=1 SV=1;; (*TAIR) AT1G05160.1 (e_value=4e-25) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc01g080900.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:72751511-72755773 transcript_region:SL2.40ch01:72751511..72755773+ go_terms:GO:0051777 functional_description:"Cytochrome P450"; GO:0051777 NbS00025122g0005.1 protein AED:0.08 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|669; (*GB) gi|356577377|ref|XP_003556803.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100802602 [Glycine max];; (*TAIR) AT2G26920.1 (e_value=4e-149) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr2:11489648-11491588 FORWARD LENGTH=646;; (*ITAG) Solyc06g073600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41794455-41796763 transcript_region:SL2.40ch06:41794455..41796763+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LFE2_ARALY); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00025122g0008.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0.5|0.66|3|0|191; (*GB) gi|255564476|ref|XP_002523234.1| (e_value=2e-76) molybdopterin synthase large subunit, putative [Ricinus communis];; (*SWP) sp|O22827|MOC2B_ARATH (e_value=3e-68) Molybdopterin synthase catalytic subunit OS=Arabidopsis thaliana GN=MOCS2 PE=2 SV=1;; (*TAIR) AT2G43760.3 (e_value=3e-69) | Symbols: | molybdopterin biosynthesis MoaE family protein | chr2:18133276-18133872 FORWARD LENGTH=198;; (*ITAG) Solyc06g073620.2.1 (e_value=9e-108) genomic_reference:SL2.40ch06 gene_region:41810722-41812391 transcript_region:SL2.40ch06:41810722..41812391- go_terms:GO:0042802,GO:0030366 functional_description:"Molybdopterin synthase catalytic subunit (AHRD V1 **** MOC2B_ARATH); contains Interpro domain(s) IPR003448 Molybdopterin biosynthesis MoaE "; GO:0042802,GO:0030366 NbS00025122g0007.1 protein AED:0.07 eAED:0.43 QI:0|0|0|1|0|0|3|0|244; (*GB) gi|67003513|dbj|BAD99418.1| (e_value=9e-45) acyl-transferase [Capsicum annuum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=1e-12) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT1G24420.1 (e_value=4e-20) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8656687-8657997 FORWARD LENGTH=436;; (*ITAG) Solyc08g014490.1.1 (e_value=5e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:4520981-4522291 transcript_region:SL2.40ch08:4520981..4522291- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00016159g0006.1 protein AED:0.34 eAED:0.36 QI:356|0.57|0.5|1|0.71|0.62|8|0|302; (*GB) gi|115473|sp|P27141.1|CAHC_TOBAC (e_value=3e-179) RecName: Full=Carbonic anhydrase, chloroplastic; AltName: Full=Carbonate dehydratase; Flags: Precursor;; (*SWP) sp|P27141|CAHC_TOBAC (e_value=1e-180) Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G01500.3 (e_value=9e-122) | Symbols: CA1 | carbonic anhydrase 1 | chr3:195173-197873 REVERSE LENGTH=336;; (*ITAG) Solyc02g086820.2.1 (e_value=1e-166) genomic_reference:SL2.40ch02 gene_region:44012475-44015926 transcript_region:SL2.40ch02:44012475..44015926+ go_terms:GO:0005515 functional_description:"Carbonic anhydrase (AHRD V1 ***- Q5NE20_SOLLC); contains Interpro domain(s) IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site "; GO:0005515 NbS00039197g0008.1 protein AED:0.24 eAED:0.24 QI:514|0.75|0.8|1|0.5|0.2|5|245|234; (*GB) gi|350539501|ref|NP_001233897.1| (e_value=2e-143) mitogen-activated protein kinase 7 [Solanum lycopersicum];; (*SWP) sp|Q39024|MPK4_ARATH (e_value=6e-133) Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2;; (*TAIR) AT4G01370.1 (e_value=5e-134) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc08g081490.2.1 (e_value=5e-146) genomic_reference:SL2.40ch08 gene_region:61696989-61700296 transcript_region:SL2.40ch08:61696989..61700296- go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** Q8LT16_SOLTU); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00039197g0005.1 protein AED:0.37 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|211; (*GB) gi|225430190|ref|XP_002282419.1| (e_value=7e-49) PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LFM6|PP375_ARATH (e_value=2e-29) Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1;; (*TAIR) AT5G11310.1 (e_value=1e-30) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:3606490-3608409 FORWARD LENGTH=602;; (*ITAG) Solyc06g065510.2.1 (e_value=1e-76) genomic_reference:SL2.40ch06 gene_region:37283835-37286950 transcript_region:SL2.40ch06:37283835..37286950+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3P4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039197g0009.1 protein AED:0.05 eAED:0.06 QI:0|0.92|0.78|0.92|1|1|14|420|588; (*GB) gi|224132234|ref|XP_002328218.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5ZJK8|TCPH_CHICK (e_value=0.0) T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1;; (*TAIR) AT3G11830.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:3732734-3736156 FORWARD LENGTH=557;; (*ITAG) Solyc06g065520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37287472-37295670 transcript_region:SL2.40ch06:37287472..37295670- go_terms:GO:0051082 functional_description:"T-complex protein eta subunit (AHRD V1 ***- A8HQ74_CHLRE); contains Interpro domain(s) IPR012720 T-complex protein 1, eta subunit "; GO:0051082 NbC25616274g0002.1 protein AED:0.09 eAED:0.12 QI:22|0|0|1|1|0.5|2|0|290; (*GB) gi|359490249|ref|XP_002267821.2| (e_value=5e-148) PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-79) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=1e-90) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc03g007210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1779466-1782208 transcript_region:SL2.40ch03:1779466..1782208+ go_terms:GO:0004675 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004675 NbS00053488g0001.1 protein AED:0.06 eAED:0.06 QI:44|1|0.85|1|0.83|0.71|7|728|136; (*GB) gi|224128250|ref|XP_002320280.1| (e_value=5e-59) predicted protein [Populus trichocarpa];; (*TAIR) AT2G47210.1 (e_value=1e-49) | Symbols: | myb-like transcription factor family protein | chr2:19379039-19382204 FORWARD LENGTH=441;; (*ITAG) Solyc01g079210.2.1 (e_value=2e-54) genomic_reference:SL2.40ch01 gene_region:70807853-70815294 transcript_region:SL2.40ch01:70807853..70815294+ go_terms:GO:0003714 functional_description:"SWR1-complex protein 4 (AHRD V1 *--- A8NYM2_COPC7); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003714 NbS00053488g0008.1 protein AED:0.20 eAED:0.20 QI:0|1|0.33|1|1|1|3|0|216; (*GB) gi|225437626|ref|XP_002278510.1| (e_value=1e-78) PREDICTED: nifU-like protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93W77|NIFU1_ARATH (e_value=1e-77) NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1;; (*TAIR) AT4G01940.1 (e_value=9e-79) | Symbols: NFU1, AtCNFU1 | NFU domain protein 1 | chr4:842265-843388 REVERSE LENGTH=231;; (*ITAG) Solyc01g079220.2.1 (e_value=7e-116) genomic_reference:SL2.40ch01 gene_region:70815571-70820929 transcript_region:SL2.40ch01:70815571..70820929- go_terms:GO:0005198 functional_description:"NifU like protein (AHRD V1 *-*- B8BR62_THAPS); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00000729g0012.1 protein AED:0.06 eAED:0.07 QI:0|1|0.85|1|1|1|7|330|517; (*GB) gi|225444021|ref|XP_002281628.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q91WM3|U3IP2_MOUSE (e_value=1e-94) U3 small nucleolar RNA-interacting protein 2 OS=Mus musculus GN=Rrp9 PE=1 SV=1;; (*TAIR) AT4G05410.1 (e_value=5e-173) | Symbols: YAO | Transducin/WD40 repeat-like superfamily protein | chr4:2743229-2745521 REVERSE LENGTH=504;; (*ITAG) Solyc02g069770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34165670-34174255 transcript_region:SL2.40ch02:34165670..34174255+ go_terms:GO:0034511,GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_CHLRE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0034511,GO:0000166 NbS00000729g0017.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0.5|0.66|3|0|433; (*GB) gi|225444029|ref|XP_002281743.1| (e_value=3e-115) PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Vitis vinifera];; (*SWP) sp|P42698|DR111_ARATH (e_value=3e-104) DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2;; (*TAIR) AT1G30480.1 (e_value=2e-105) | Symbols: DRT111 | D111/G-patch domain-containing protein | chr1:10790315-10792423 FORWARD LENGTH=387;; (*ITAG) Solyc02g069790.2.1 (e_value=3e-156) genomic_reference:SL2.40ch02 gene_region:34197950-34202028 transcript_region:SL2.40ch02:34197950..34202028+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Splicing factor 45 (AHRD V1 ***- B6TI71_MAIZE); contains Interpro domain(s) IPR016967 Splicing factor, SPF45 "; GO:0003676,GO:0000166,GO:0005622 NbS00000729g0016.1 protein AED:0.25 eAED:0.25 QI:252|0.88|0.89|1|0.77|0.89|19|537|784; (*GB) gi|255564407|ref|XP_002523200.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q922D4|PP6R3_MOUSE (e_value=5e-54) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1;; (*TAIR) AT1G30470.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr1:10779423-10786415 FORWARD LENGTH=811;; (*ITAG) Solyc02g069780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34176125-34196536 transcript_region:SL2.40ch02:34176125..34196536+ go_terms:GO:0019903 functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 **** SAPS3_CHICK); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; GO:0019903 NbS00000729g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|7417008|gb|AAF62404.1|AF212184_1 (e_value=0.0) cell death associated protein [Nicotiana tabacum];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=6e-57) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=5e-58) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc02g069800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34203354-34204361 transcript_region:SL2.40ch02:34203354..34204361- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU6_ACTCH); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00030443g0001.1 protein AED:0.13 eAED:0.13 QI:656|1|0.5|1|0|0|2|0|501; (*GB) gi|147767466|emb|CAN66716.1| (e_value=0.0) hypothetical protein VITISV_041185 [Vitis vinifera];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc04g011460.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:3900842-3902368 transcript_region:SL2.40ch04:3900842..3902368- functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC)"; NbS00030443g0005.1 protein AED:0.45 eAED:0.72 QI:0|0|0.33|0.66|1|1|3|104|67 NbS00030443g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|4|0|390; (*GB) gi|30025966|gb|AAP04522.1| (e_value=0.0) heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|Q9LHA8|HSP7D_ARATH (e_value=0.0) Heat shock 70 kDa protein 4 OS=Arabidopsis thaliana GN=HSP70-4 PE=1 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00052782g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|224111446|ref|XP_002315858.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-33) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=3e-43) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00013964g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|494; (*GB) gi|209954729|dbj|BAG80555.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9ZQ94|U73C5_ARATH (e_value=6e-150) UDP-glycosyltransferase 73C5 OS=Arabidopsis thaliana GN=UGT73C5 PE=2 SV=1;; (*TAIR) AT2G36800.1 (e_value=5e-151) | Symbols: DOGT1, UGT73C5 | don-glucosyltransferase 1 | chr2:15423493-15424980 REVERSE LENGTH=495;; (*ITAG) Solyc10g083860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62918325-62919809 transcript_region:SL2.40ch10:62918325..62919809- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00013964g0005.1 protein AED:0.18 eAED:0.18 QI:95|1|1|1|1|1|6|282|204; (*GB) gi|225441151|ref|XP_002267396.1| (e_value=2e-89) PREDICTED: BRCA1-associated RING domain protein 1 [Vitis vinifera];; (*SWP) sp|O95271|TNKS1_HUMAN (e_value=8e-18) Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2;; (*TAIR) AT3G09890.1 (e_value=8e-81) | Symbols: | Ankyrin repeat family protein | chr3:3032678-3034158 FORWARD LENGTH=206;; (*ITAG) Solyc10g083870.1.1 (e_value=7e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62923932-62926241 transcript_region:SL2.40ch10:62923932..62926241- functional_description:"Ankyrin repeat domain 1 (AHRD V1 **-- B5DG59_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00000970g0120.1 protein AED:0.13 eAED:0.13 QI:509|0.9|0.90|1|0.7|0.54|11|0|1069 NbS00000970g0117.1 protein AED:0.25 eAED:0.25 QI:0|0.77|0.7|0.8|0.88|0.8|10|0|387 NbS00000970g0122.1 protein AED:0.14 eAED:0.14 QI:376|0.75|0.77|1|0.87|0.88|9|0|830 NbS00038074g0001.1 protein AED:0.18 eAED:0.18 QI:118|0.9|0.81|1|1|1|11|0|534; (*GB) gi|225444599|ref|XP_002274576.1| (e_value=0.0) PREDICTED: protein Red isoform 1 [Vitis vinifera];; (*SWP) sp|Q9Z1M8|RED_MOUSE (e_value=9e-24) Protein Red OS=Mus musculus GN=Ik PE=2 SV=2;; (*TAIR) AT2G26460.1 (e_value=0.0) | Symbols: SMU2 | RED family protein | chr2:11255049-11258913 REVERSE LENGTH=585;; (*ITAG) Solyc07g017490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7378323-7382780 transcript_region:SL2.40ch07:7378323..7382780+ go_terms:GO:0005634 functional_description:"Red family protein (AHRD V1 ***- D7LDI9_ARALY); contains Interpro domain(s) IPR012916 RED-like, N-terminal "; GO:0005634 NbS00005352g0004.1 protein AED:0.33 eAED:0.34 QI:131|0.81|0.83|1|0.90|0.83|12|0|467; (*GB) gi|111227950|gb|ABH08964.1| (e_value=0.0) 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Nicotiana tabacum];; (*SWP) sp|Q9XES0|DXR_MENPI (e_value=0.0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2;; (*TAIR) AT5G62790.1 (e_value=0.0) | Symbols: DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | chr5:25214358-25217292 REVERSE LENGTH=477;; (*ITAG) Solyc03g114340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58400724-58406203 transcript_region:SL2.40ch03:58400724..58406203+ go_terms:GO:0030604,GO:0004412 functional_description:"1-deoxy-D-xylulose-5-phosphate reductoisomerase (AHRD V1 **** Q947C3_SOLLC); contains Interpro domain(s) IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase "; GO:0030604,GO:0004412 NbS00014288g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|100; (*GB) gi|224084324|ref|XP_002307259.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15730.1 (e_value=7e-56) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc02g090620.2.1 (e_value=1e-66) genomic_reference:SL2.40ch02 gene_region:46742319-46745553 transcript_region:SL2.40ch02:46742319..46745553- functional_description:"Unknown Protein (AHRD V1)"; NbS00009485g0005.1 protein AED:0.01 eAED:0.01 QI:124|1|0.66|1|1|1|3|349|154; (*GB) gi|585876|sp|Q07761.1|RL23A_TOBAC (e_value=9e-62) RecName: Full=60S ribosomal protein L23a; AltName: Full=L25;; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=3e-63) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=3e-57) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc10g086330.1.1 (e_value=5e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64518706-64520781 transcript_region:SL2.40ch10:64518706..64520781+ go_terms:GO:0005840,GO:0000166 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR019985 Ribosomal protein L23 "; GO:0005840,GO:0000166 NbS00009485g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|1|1|0.5|4|0|253; (*GB) gi|224090653|ref|XP_002309045.1| (e_value=5e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|P82266|K125_ARATH (e_value=1e-128) Probable 125 kDa kinesin-related protein OS=Arabidopsis thaliana GN=At2g36200 PE=2 SV=2;; (*TAIR) AT2G37420.1 (e_value=1e-147) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=1e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00008250g0014.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0|0.75|0.66|0.5|4|0|331; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=0.0) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc01g095770.2.1 (e_value=3e-172) genomic_reference:SL2.40ch01 gene_region:78720407-78724016 transcript_region:SL2.40ch01:78720407..78724016- go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00008250g0012.1 protein AED:0.04 eAED:0.04 QI:149|1|0.8|1|0.5|0.2|5|0|754; (*GB) gi|225462751|ref|XP_002270689.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246758 [Vitis vinifera];; (*SWP) sp|Q9M3B6|PKP4_ARATH (e_value=0.0) Plastidial pyruvate kinase 4, chloroplastic OS=Arabidopsis thaliana GN=PKP4 PE=2 SV=1;; (*TAIR) AT3G49160.1 (e_value=0.0) | Symbols: | pyruvate kinase family protein | chr3:18222132-18224415 REVERSE LENGTH=710;; (*ITAG) Solyc06g051930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32087235-32092835 transcript_region:SL2.40ch06:32087235..32092835- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase family protein (AHRD V1 ***- D7LSF1_ARALY); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00008250g0013.1 protein AED:0.17 eAED:0.17 QI:166|0.57|0.5|0.75|0.71|0.75|8|282|289; (*GB) gi|77999263|gb|ABB16978.1| (e_value=3e-121) salt tolerance protein 5-like protein [Solanum tuberosum];; (*SWP) sp|O35685|NUDC_MOUSE (e_value=2e-56) Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1;; (*TAIR) AT5G53400.1 (e_value=4e-83) | Symbols: BOB1 | HSP20-like chaperones superfamily protein | chr5:21661588-21663383 FORWARD LENGTH=304;; (*ITAG) Solyc03g083390.2.1 (e_value=3e-122) genomic_reference:SL2.40ch03 gene_region:46783589-46788273 transcript_region:SL2.40ch03:46783589..46788273+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00044912g0004.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.75|1|1|4|0|657; (*GB) gi|225425668|ref|XP_002269694.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera];; (*SWP) sp|Q8LK93|PP145_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2;; (*TAIR) AT2G02980.1 (e_value=0.0) | Symbols: OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:868468-870279 FORWARD LENGTH=603;; (*ITAG) Solyc05g013200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6272993-6274810 transcript_region:SL2.40ch05:6272993..6274810+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00044912g0011.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|490; (*GB) gi|358346983|ref|XP_003637542.1| (e_value=0.0) Beta-ketoacyl-CoA synthase [Medicago truncatula];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=0.0) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc05g013220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6279749-6282303 transcript_region:SL2.40ch05:6279749..6282303- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00044912g0013.1 protein AED:0.14 eAED:0.14 QI:179|0.92|0.92|1|0.61|0.64|14|518|775; (*GB) gi|42563076|ref|NP_177107.2| (e_value=0.0) phosphate transporter PHO1-10 [Arabidopsis thaliana];; (*SWP) sp|Q6R8G0|PHO1A_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 10 OS=Arabidopsis thaliana GN=PHO1-H10 PE=2 SV=1;; (*TAIR) AT1G69480.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr1:26114187-26117479 REVERSE LENGTH=777;; (*ITAG) Solyc05g013180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6257648-6262472 transcript_region:SL2.40ch05:6257648..6262472- go_terms:GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0004930 NbS00010138g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|267 NbS00010138g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|165 NbS00043165g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.5|1|1|1|4|0|296; (*GB) gi|225447324|ref|XP_002280216.1| (e_value=2e-128) PREDICTED: peroxidase 27 [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=2e-99) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=2e-100) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc05g046000.2.1 (e_value=2e-134) genomic_reference:SL2.40ch05 gene_region:57183616-57185801 transcript_region:SL2.40ch05:57183616..57185801+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00049408g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|395; (*GB) gi|297745547|emb|CBI40712.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEV3|Y2060_ARATH (e_value=2e-157) BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1;; (*TAIR) AT2G30600.4 (e_value=1e-158) | Symbols: | BTB/POZ domain-containing protein | chr2:13037410-13041475 FORWARD LENGTH=809;; (*ITAG) Solyc04g082420.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63674635-63677697 transcript_region:SL2.40ch04:63674635..63677697- go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7LC69_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00000881g0011.1 protein AED:0.19 eAED:0.19 QI:315|1|1|1|0.75|0.6|5|408|157; (*GB) gi|225462005|ref|XP_002272794.1| (e_value=7e-18) PREDICTED: uncharacterized protein LOC100244627 isoform 1 [Vitis vinifera];; (*TAIR) AT1G56200.2 (e_value=2e-14) | Symbols: emb1303 | embryo defective 1303 | chr1:21030852-21031886 FORWARD LENGTH=151;; (*ITAG) Solyc04g051850.2.1 (e_value=6e-53) genomic_reference:SL2.40ch04 gene_region:50309231-50311889 transcript_region:SL2.40ch04:50309231..50311889+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000881g0010.1 protein AED:0.25 eAED:0.25 QI:161|0.9|0.90|1|0.3|0.27|11|376|278; (*GB) gi|350538979|ref|NP_001234112.1| (e_value=6e-167) shikimate kinase, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q00497|AROK_SOLLC (e_value=2e-168) Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G21940.4 (e_value=1e-93) | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304;; (*ITAG) Solyc04g051860.2.1 (e_value=1e-169) genomic_reference:SL2.40ch04 gene_region:50314366-50320348 transcript_region:SL2.40ch04:50314366..50320348+ go_terms:GO:0005515,GO:0004765 functional_description:"Shikimate kinase (AHRD V1 **** B9VU88_VITVI); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005515,GO:0004765 NbS00000881g0005.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|197; (*GB) gi|20149052|gb|AAM12781.1| (e_value=4e-69) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=2e-38) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc04g053020.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50455610-50456056 transcript_region:SL2.40ch04:50455610..50456056- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00000881g0111.1 protein AED:0.46 eAED:0.49 QI:0|0|0|0.33|0|0.66|3|0|309 NbS00000881g0110.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.2|1|1|5|0|283 NbS00000881g0101.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|357 NbS00012929g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.66|1|0.5|0.33|3|0|522; (*GB) gi|15082058|gb|AAK84008.1|AF393847_1 (e_value=0.0) beta-amylase PCT-BMYI [Solanum tuberosum];; (*SWP) sp|O23553|BAM3_ARATH (e_value=0.0) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=0.0) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g077530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58684261-58687653 transcript_region:SL2.40ch08:58684261..58687653+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q5F305_SOYBN); contains Interpro domain(s) IPR001371 Glycoside hydrolase, family 14B, plant "; GO:0016161 NbS00012929g0001.1 protein AED:0.32 eAED:0.37 QI:0|0.25|0.2|1|1|1|5|0|487; (*GB) gi|15082058|gb|AAK84008.1|AF393847_1 (e_value=0.0) beta-amylase PCT-BMYI [Solanum tuberosum];; (*SWP) sp|O23553|BAM3_ARATH (e_value=4e-137) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=3e-138) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g077530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58684261-58687653 transcript_region:SL2.40ch08:58684261..58687653+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q5F305_SOYBN); contains Interpro domain(s) IPR001371 Glycoside hydrolase, family 14B, plant "; GO:0016161 NbS00012929g0011.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|2|0|252; (*GB) gi|15082058|gb|AAK84008.1|AF393847_1 (e_value=1e-128) beta-amylase PCT-BMYI [Solanum tuberosum];; (*SWP) sp|O23553|BAM3_ARATH (e_value=1e-114) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=9e-116) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g077530.2.1 (e_value=4e-132) genomic_reference:SL2.40ch08 gene_region:58684261-58687653 transcript_region:SL2.40ch08:58684261..58687653+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q5F305_SOYBN); contains Interpro domain(s) IPR001371 Glycoside hydrolase, family 14B, plant "; GO:0016161 NbS00025509g0006.1 protein AED:0.45 eAED:0.56 QI:0|0.5|0|1|1|1|3|0|110; (*GB) gi|12585428|sp|O82702.1|VATG1_TOBAC (e_value=1e-55) RecName: Full=V-type proton ATPase subunit G 1; Short=V-ATPase subunit G 1; AltName: Full=Vacuolar proton pump subunit G 1;; (*SWP) sp|O82702|VATG1_TOBAC (e_value=3e-57) V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1;; (*TAIR) AT3G01390.2 (e_value=8e-40) | Symbols: VMA10, AVMA10 | vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110;; (*ITAG) Solyc04g049330.2.1 (e_value=5e-51) genomic_reference:SL2.40ch04 gene_region:40646720-40649557 transcript_region:SL2.40ch04:40646720..40649557+ go_terms:GO:0046933 functional_description:"V-type proton ATPase subunit G 1 (AHRD V1 ***- VATG1_TOBAC); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0046933 NbS00025509g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.62|1|0.85|0.87|8|0|504; (*GB) gi|296086026|emb|CBI31467.3| (e_value=1e-159) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19500.1 (e_value=8e-27) | Symbols: | Tryptophan/tyrosine permease | chr5:6579019-6581699 FORWARD LENGTH=505;; (*ITAG) Solyc04g049340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40649408-40652294 transcript_region:SL2.40ch04:40649408..40652294- go_terms:GO:0005275 functional_description:"Tyrosine-specific transport protein (AHRD V1 *-*- D6YUH8_WADCW); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; GO:0005275 NbS00036591g0006.1 protein AED:0.20 eAED:0.20 QI:28|0.8|0.66|0.83|0.6|0.66|6|0|140; (*GB) gi|255580396|ref|XP_002531025.1| (e_value=3e-35) Vesicle transport protein GOT1B, putative [Ricinus communis];; (*TAIR) AT1G05785.2 (e_value=2e-29) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr1:1730981-1732406 FORWARD LENGTH=135;; (*ITAG) Solyc09g098500.2.1 (e_value=2e-46) genomic_reference:SL2.40ch09 gene_region:67569666-67573954 transcript_region:SL2.40ch09:67569666..67573954+ go_terms:GO:0005515 functional_description:"Got1-like protein (AHRD V1 ***- A2Q4X9_MEDTR); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515 NbS00036591g0003.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|2|0|245 NbS00036591g0007.1 protein AED:0.05 eAED:0.11 QI:0|0.2|0|1|0.2|0.33|6|0|787; (*GB) gi|559237|gb|AAA98492.1| (e_value=5e-43) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=3e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00006028g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0|1|0.5|0.66|3|0|167; (*GB) gi|350534468|ref|NP_001234398.1| (e_value=4e-87) ripening regulated protein DDTFR18 [Solanum lycopersicum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=4e-34) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=1e-60) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc04g074850.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:58359526-58369622 transcript_region:SL2.40ch04:58359526..58369622- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00006028g0002.1 protein AED:0.35 eAED:0.50 QI:0|0|0|1|1|1|2|0|145; (*GB) gi|350534468|ref|NP_001234398.1| (e_value=3e-34) ripening regulated protein DDTFR18 [Solanum lycopersicum];; (*TAIR) AT5G65380.1 (e_value=1e-32) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc04g074840.2.1 (e_value=4e-37) genomic_reference:SL2.40ch04 gene_region:58343145-58346840 transcript_region:SL2.40ch04:58343145..58346840- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00038164g0006.1 protein AED:0.11 eAED:0.11 QI:183|0.25|0.8|0.8|1|1|5|418|347; (*GB) gi|359472682|ref|XP_003631184.1| (e_value=4e-95) PREDICTED: LOW QUALITY PROTEIN: probable mannose-6-phosphate isomerase-like [Vitis vinifera];; (*SWP) sp|P34948|MPI_CANAL (e_value=8e-49) Mannose-6-phosphate isomerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMI1 PE=1 SV=2;; (*TAIR) AT3G02570.1 (e_value=5e-74) | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomerase, type I | chr3:543463-545478 REVERSE LENGTH=432;; (*ITAG) Solyc06g060100.2.1 (e_value=2e-122) genomic_reference:SL2.40ch06 gene_region:34396086-34401442 transcript_region:SL2.40ch06:34396086..34401442- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 1.2"; GO:0004476 NbS00019154g0002.1 protein AED:0.27 eAED:0.27 QI:76|1|0.5|1|0|0|2|0|292; (*GB) gi|225461349|ref|XP_002284635.1| (e_value=6e-144) PREDICTED: uncharacterized protein LOC100264154 [Vitis vinifera];; (*TAIR) AT5G54400.1 (e_value=1e-145) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22090680-22091998 FORWARD LENGTH=292;; (*ITAG) Solyc07g063460.1.1 (e_value=5e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63163945-63164823 transcript_region:SL2.40ch07:63163945..63164823- go_terms:GO:0008152 functional_description:"Methyltransferase family protein (AHRD V1 ***- C0WM11_LACBU); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00005634g0006.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|1|1|4|0|112 NbS00005634g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.83|1|0.90|0.83|12|0|792; (*GB) gi|296082150|emb|CBI21155.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NV83|SR140_MOUSE (e_value=1e-99) U2 snRNP-associated SURP motif-containing protein OS=Mus musculus GN=U2surp PE=1 SV=3;; (*TAIR) AT5G25060.1 (e_value=0.0) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00029417g0004.1 protein AED:0.10 eAED:0.10 QI:353|1|0.9|1|0.88|0.8|10|411|368; (*GB) gi|296086505|emb|CBI32094.3| (e_value=1e-127) unnamed protein product [Vitis vinifera];; (*SWP) sp|P64956|Y2253_MYCBO (e_value=1e-18) Uncharacterized protein Mb2253c OS=Mycobacterium bovis GN=Mb2253c PE=4 SV=1;; (*TAIR) AT1G24090.1 (e_value=4e-104) | Symbols: | RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353;; (*ITAG) Solyc05g006090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:818986-824063 transcript_region:SL2.40ch05:818986..824063+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- A4TBN9_MYCGI); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00046389g0001.1 protein AED:0.75 eAED:0.81 QI:0|0|0|0.6|1|1|5|0|96 NbS00004724g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|123 NbS00004724g0007.1 protein AED:0.43 eAED:0.87 QI:0|0|0|1|1|1|3|0|92; (*ITAG) Solyc06g009520.2.1 (e_value=3e-19) genomic_reference:SL2.40ch06 gene_region:3498359-3503631 transcript_region:SL2.40ch06:3498359..3503631- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00003461g0001.1 protein AED:0.23 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|94466657|emb|CAJ44457.1| (e_value=9e-45) ALY protein [Nicotiana benthamiana];; (*TAIR) AT5G59950.2 (e_value=7e-20) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140629-24141504 FORWARD LENGTH=178;; (*ITAG) Solyc10g086400.1.1 (e_value=4e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00039408g0004.1 protein AED:0.31 eAED:0.31 QI:214|1|1|1|0.62|0.66|9|472|295; (*GB) gi|356499805|ref|XP_003518727.1| (e_value=4e-97) PREDICTED: uncharacterized protein LOC100779674 [Glycine max];; (*TAIR) AT2G02960.3 (e_value=4e-88) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271;; (*ITAG) Solyc01g010880.2.1 (e_value=9e-142) genomic_reference:SL2.40ch01 gene_region:6317605-6322790 transcript_region:SL2.40ch01:6317605..6322790- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00035181g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|224103235|ref|XP_002312977.1| (e_value=5e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|P25390|SSK22_YEAST (e_value=1e-22) Serine/threonine-protein kinase SSK22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SSK22 PE=1 SV=2;; (*TAIR) AT3G45670.1 (e_value=4e-42) | Symbols: | Protein kinase superfamily protein | chr3:16765320-16766459 FORWARD LENGTH=379;; (*ITAG) Solyc07g047910.1.1 (e_value=5e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56433677-56437115 transcript_region:SL2.40ch07:56433677..56437115+ go_terms:GO:0005515,GO:0016301 functional_description:"Protein kinase-like protein (AHRD V1 *-** Q8LCP0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00002638g0008.1 protein AED:0.34 eAED:0.34 QI:262|1|0.66|1|1|1|3|0|344; (*GB) gi|15705932|gb|AAL05884.1|AF411856_1 (e_value=7e-83) transcriptional activator FHA1 [Nicotiana tabacum];; (*SWP) sp|O14270|FHL1_SCHPO (e_value=3e-16) Fork head transcription factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fhl1 PE=2 SV=2;; (*TAIR) AT3G07220.1 (e_value=3e-77) | Symbols: | SMAD/FHA domain-containing protein | chr3:2297968-2299407 FORWARD LENGTH=320;; (*ITAG) Solyc09g059500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50169017-50179394 transcript_region:SL2.40ch09:50169017..50179394+ go_terms:GO:0016563 functional_description:"Forkhead box K1 (AHRD V1 *--- C1K2Z9_ORYLA); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0016563 NbS00002638g0007.1 protein AED:0.13 eAED:0.13 QI:493|1|0.42|1|0.83|0.71|7|0|241; (*GB) gi|147865523|emb|CAN81560.1| (e_value=5e-83) hypothetical protein VITISV_009902 [Vitis vinifera];; (*SWP) sp|Q56XP9|ERFL1_ARATH (e_value=1e-44) Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana GN=At4g13040 PE=2 SV=2;; (*TAIR) AT4G13040.1 (e_value=1e-45) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:7614100-7615310 FORWARD LENGTH=226;; (*ITAG) Solyc09g059510.2.1 (e_value=9e-98) genomic_reference:SL2.40ch09 gene_region:50196312-50202155 transcript_region:SL2.40ch09:50196312..50202155- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor-like protein At4g13040 (AHRD V1 *--- ERFL1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00024565g0004.1 protein AED:0.10 eAED:0.10 QI:344|0.89|0.86|0.96|1|1|29|0|1343; (*GB) gi|359475538|ref|XP_002275614.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase TOR-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FR53|TOR_ARATH (e_value=0.0) Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1;; (*TAIR) AT1G50030.2 (e_value=0.0) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2454;; (*ITAG) Solyc01g106770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00029895g0002.1 protein AED:0.30 eAED:0.59 QI:275|0|0.66|1|0|0.33|3|85|83; (*ITAG) Solyc07g055700.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:60959511-60969153 transcript_region:SL2.40ch07:60959511..60969153- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (Fragment) (AHRD V1 *--- Q5GMH1_MOUSE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00029895g0005.1 protein AED:0.34 eAED:0.38 QI:0|0.33|0.5|0.75|0.33|0.5|4|391|213; (*ITAG) Solyc04g076250.2.1 (e_value=6e-28) genomic_reference:SL2.40ch04 gene_region:58779098-58781511 transcript_region:SL2.40ch04:58779098..58781511- functional_description:"Unknown Protein (AHRD V1)"; NbS00045565g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|224120802|ref|XP_002330955.1| (e_value=3e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M1V2|SOT5_ARATH (e_value=7e-66) Cytosolic sulfotransferase 5 OS=Arabidopsis thaliana GN=SOT5 PE=1 SV=1;; (*TAIR) AT3G45070.1 (e_value=6e-67) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16486378-16487349 REVERSE LENGTH=323;; (*ITAG) Solyc04g028380.1.1 (e_value=6e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:27186032-27186979 transcript_region:SL2.40ch04:27186032..27186979+ go_terms:GO:0080118 functional_description:"Sulfotransferase 5b (AHRD V1 **** C5H9Q0_BRARP); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00029990g0005.1 protein AED:0.16 eAED:0.17 QI:0|0.8|0.66|0.83|1|1|6|0|189; (*GB) gi|351723417|ref|NP_001237278.1| (e_value=1e-130) uncharacterized protein LOC100306084 [Glycine max];; (*SWP) sp|Q9XI05|PSB3A_ARATH (e_value=3e-131) Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2;; (*TAIR) AT1G21720.1 (e_value=2e-132) | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626394-7628070 FORWARD LENGTH=204;; (*ITAG) Solyc04g009410.2.1 (e_value=5e-132) genomic_reference:SL2.40ch04 gene_region:2835286-2840148 transcript_region:SL2.40ch04:2835286..2840148+ go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SXW4_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00029990g0006.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|0|0|2|0|189; (*GB) gi|296083848|emb|CBI24236.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12340.1 (e_value=5e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220;; (*ITAG) Solyc04g057830.1.1 (e_value=1e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54085213-54085833 transcript_region:SL2.40ch04:54085213..54085833+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046097g0004.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.33|1|1|3|0|61; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=2e-18) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=5e-20) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=1e-17) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc05g055640.2.1 (e_value=3e-21) genomic_reference:SL2.40ch05 gene_region:64354473-64356655 transcript_region:SL2.40ch05:64354473..64356655+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0003735 NbS00046097g0008.1 protein AED:0.23 eAED:0.23 QI:203|0.76|0.71|1|0.92|0.92|14|228|382; (*GB) gi|18072805|emb|CAC80377.1| (e_value=0.0) glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum];; (*SWP) sp|P09094|G3PC_TOBAC (e_value=4e-134) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1;; (*TAIR) AT1G16300.1 (e_value=5e-178) | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate dehydrogenase of plastid 2 | chr1:5574433-5577406 FORWARD LENGTH=420;; (*ITAG) Solyc10g005510.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:417823-423467 transcript_region:SL2.40ch10:417823..423467- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q8VWN9_CAPAN); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00046097g0007.1 protein AED:0.52 eAED:0.52 QI:0|0.33|0|0.5|1|1|4|0|99; (*GB) gi|227462435|gb|ABI49160.2| (e_value=4e-66) SM10-1 [Nicotiana tabacum];; (*SWP) sp|Q9VUQ8|DCN1L_DROME (e_value=3e-23) DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=1 SV=2;; (*TAIR) AT3G12760.1 (e_value=4e-51) | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250;; (*ITAG) Solyc07g066650.2.1 (e_value=6e-63) genomic_reference:SL2.40ch07 gene_region:65228371-65238555 transcript_region:SL2.40ch07:65228371..65238555- go_terms:GO:0043130 functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00015879g0010.1 protein AED:0.11 eAED:0.07 QI:126|1|0.75|1|1|0.75|4|1669|236; (*GB) gi|359488571|ref|XP_002279659.2| (e_value=2e-51) PREDICTED: probable esterase At1g33990-like [Vitis vinifera];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=4e-22) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT3G29770.1 (e_value=2e-38) | Symbols: ATMES11, MES11 | methyl esterase 11 | chr3:11648471-11650565 FORWARD LENGTH=390;; (*ITAG) Solyc05g012180.2.1 (e_value=5e-95) genomic_reference:SL2.40ch05 gene_region:5446238-5449535 transcript_region:SL2.40ch05:5446238..5449535- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00015879g0012.1 protein AED:0.08 eAED:0.08 QI:134|0.90|0.91|1|0.81|0.83|12|783|622; (*GB) gi|296081370|emb|CBI16803.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q14562|DHX8_HUMAN (e_value=0.0) ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1;; (*TAIR) AT1G26370.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr1:9122030-9125368 REVERSE LENGTH=717;; (*ITAG) Solyc09g008120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1591043-1599834 transcript_region:SL2.40ch09:1591043..1599834+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00015879g0011.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|0|0|2|0|73; (*ITAG) Solyc05g012170.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5362557-5362937 transcript_region:SL2.40ch05:5362557..5362937+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016707g0004.1 protein AED:0.13 eAED:0.19 QI:77|0.5|0.28|1|0.5|0.57|7|22|333; (*GB) gi|350536429|ref|NP_001233990.1| (e_value=8e-138) proline transporter 2 [Solanum lycopersicum];; (*SWP) sp|Q9C733|LHTL1_ARATH (e_value=2e-11) Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2;; (*TAIR) AT3G55740.2 (e_value=2e-122) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20696573-20698157 FORWARD LENGTH=383;; (*ITAG) Solyc05g052830.2.1 (e_value=9e-156) genomic_reference:SL2.40ch05 gene_region:62143139-62149192 transcript_region:SL2.40ch05:62143139..62149192- go_terms:GO:0015193 functional_description:"Proline transporter 2 (AHRD V1 **** Q9XE49_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00012463g0011.1 protein AED:0.22 eAED:0.22 QI:44|0.9|0.90|1|0.9|0.90|11|255|520; (*GB) gi|225449388|ref|XP_002282470.1| (e_value=0.0) PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera];; (*SWP) sp|Q9R0X5|RPGR_MOUSE (e_value=1e-16) X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=1;; (*TAIR) AT3G55580.1 (e_value=2e-159) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:20612766-20615730 FORWARD LENGTH=488;; (*ITAG) Solyc09g011160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4509244-4514595 transcript_region:SL2.40ch09:4509244..4514595+ go_terms:GO:0003682,GO:0008536 functional_description:"Regulator of chromosome condensation RCC1 (AHRD V1 *--- B8FLG8_DESAA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682,GO:0008536 NbS00012463g0010.1 protein AED:0.07 eAED:0.07 QI:606|1|0.90|1|0.9|0.81|11|283|732; (*GB) gi|350539948|ref|NP_001234845.1| (e_value=0.0) Prf interactor 30137 [Solanum lycopersicum];; (*SWP) sp|P0C7P8|LHWL1_ARATH (e_value=2e-67) Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1;; (*TAIR) AT1G06150.2 (e_value=1e-68) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1869228-1873194 REVERSE LENGTH=734;; (*ITAG) Solyc09g011170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4514885-4522076 transcript_region:SL2.40ch09:4514885..4522076- go_terms:GO:0016563,GO:0042803 functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *--- Y1615_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0016563,GO:0042803 NbS00029593g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|209954711|dbj|BAG80546.1| (e_value=9e-112) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|O48676|U74B1_ARATH (e_value=5e-73) UDP-glycosyltransferase 74B1 OS=Arabidopsis thaliana GN=UGT74B1 PE=1 SV=1;; (*TAIR) AT1G24100.1 (e_value=4e-74) | Symbols: UGT74B1 | UDP-glucosyl transferase 74B1 | chr1:8525547-8527010 REVERSE LENGTH=460;; (*ITAG) Solyc05g006140.1.1 (e_value=2e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:844631-845308 transcript_region:SL2.40ch05:844631..845308- go_terms:GO:0010294 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0010294 NbS00020841g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|61; (*ITAG) Solyc00g022070.1.1 (e_value=3e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12007281-12007518 transcript_region:SL2.40ch00:12007281..12007518+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013797g0028.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.2|1|1|1|5|0|856; (*GB) gi|255579903|ref|XP_002530787.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q9M3D6|AB19G_ARATH (e_value=5e-79) ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1;; (*TAIR) AT3G55130.1 (e_value=4e-80) | Symbols: ATWBC19, WBC19 | white-brown complex homolog 19 | chr3:20434111-20436288 REVERSE LENGTH=725;; (*ITAG) Solyc01g097430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80046125-80049268 transcript_region:SL2.40ch01:80046125..80049268- go_terms:GO:0042803 functional_description:"ABC transporter G family member 2 (AHRD V1 *-*- AB2G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042803 NbS00013797g0021.1 protein AED:0.29 eAED:0.29 QI:36|0.5|0.4|1|0|0.4|5|0|151; (*ITAG) Solyc01g097470.2.1 (e_value=7e-37) genomic_reference:SL2.40ch01 gene_region:80076944-80078611 transcript_region:SL2.40ch01:80076944..80078611- functional_description:"Neurogenic locus notch protein-like (AHRD V1 ***- B6SSE6_MAIZE)"; NbS00013797g0001.1 protein AED:0.31 eAED:0.31 QI:1319|0.72|0.83|1|1|1|12|0|574; (*GB) gi|350538561|ref|NP_001234093.1| (e_value=0.0) LSTK-1-like kinase [Solanum lycopersicum];; (*SWP) sp|A2ZMH2|NEK2_ORYSI (e_value=1e-172) Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica GN=NEK2 PE=2 SV=1;; (*TAIR) AT1G54510.3 (e_value=1e-171) | Symbols: NEK1 | NIMA-related serine/threonine kinase 1 | chr1:20358603-20362006 REVERSE LENGTH=612;; (*ITAG) Solyc01g097500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80082833-80094266 transcript_region:SL2.40ch01:80082833..80094266- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013797g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|78|286; (*GB) gi|225451299|ref|XP_002278297.1| (e_value=6e-132) PREDICTED: probable ribose-5-phosphate isomerase [Vitis vinifera];; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=2e-86) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1;; (*TAIR) AT3G04790.1 (e_value=2e-120) | Symbols: | Ribose 5-phosphate isomerase, type A protein | chr3:1313365-1314195 FORWARD LENGTH=276;; (*ITAG) Solyc01g097460.2.1 (e_value=4e-164) genomic_reference:SL2.40ch01 gene_region:80067637-80074843 transcript_region:SL2.40ch01:80067637..80074843+ go_terms:GO:0009052 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 ***- A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0009052 NbS00013797g0029.1 protein AED:0.07 eAED:0.09 QI:0|0.25|0|1|0|0|5|0|446; (*GB) gi|255542332|ref|XP_002512229.1| (e_value=4e-28) calmodulin binding protein, putative [Ricinus communis];; (*ITAG) Solyc01g097490.1.1 (e_value=6e-123) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:80081666-80082520 transcript_region:SL2.40ch01:80081666..80082520+ functional_description:"IQ calmodulin-binding motif family protein (AHRD V1 ***- B6SSD5_MAIZE)"; NbS00013797g0030.1 protein AED:0.28 eAED:0.28 QI:113|1|1|1|0.66|0.57|7|718|138; (*GB) gi|18397007|ref|NP_566238.1| (e_value=2e-83) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q9SQZ9|PITH1_ARATH (e_value=5e-85) PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2;; (*TAIR) AT3G04780.1 (e_value=4e-86) | Symbols: | Protein of unknown function (DUF1000) | chr3:1311447-1313013 REVERSE LENGTH=176;; (*ITAG) Solyc01g097450.2.1 (e_value=9e-86) genomic_reference:SL2.40ch01 gene_region:80067623-80073617 transcript_region:SL2.40ch01:80067623..80073617+ go_terms:GO:0015035 functional_description:"Thioredoxin-like protein 1 (AHRD V1 ***- B6SHZ5_MAIZE); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0015035 NbS00013797g0025.1 protein AED:0.34 eAED:0.34 QI:0|0.71|0.73|0.93|0.42|0.66|15|93|635; (*GB) gi|350539878|ref|NP_001234560.1| (e_value=0.0) putative peptide:N-glycanase [Solanum lycopersicum];; (*SWP) sp|Q9FGY9|PNG1_ARATH (e_value=0.0) Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1;; (*TAIR) AT5G49570.1 (e_value=0.0) | Symbols: AtPNG1, PNG1 | peptide-N-glycanase 1 | chr5:20112071-20116125 REVERSE LENGTH=721;; (*ITAG) Solyc01g097440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80052053-80066257 transcript_region:SL2.40ch01:80052053..80066257+ go_terms:GO:0000224 functional_description:"Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase (AHRD V1 **-* PNG1_ARATH); contains Interpro domain(s) IPR002931 Transglutaminase-like "; GO:0000224 NbS00052656g0004.1 protein AED:0.15 eAED:0.15 QI:6|0.75|0.66|1|0.87|0.88|9|0|611; (*GB) gi|296085356|emb|CBI29088.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2H102|BST1_CHAGB (e_value=5e-41) GPI inositol-deacylase OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=BST1 PE=3 SV=2;; (*TAIR) AT3G27325.2 (e_value=0.0) | Symbols: | hydrolases, acting on ester bonds | chr3:10095956-10102087 FORWARD LENGTH=1121;; (*ITAG) Solyc02g093770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49064946-49077850 transcript_region:SL2.40ch02:49064946..49077850- go_terms:GO:0031227 functional_description:"GPI inositol-deacylase (AHRD V1 *-*- C5FP83_NANOT); contains Interpro domain(s) IPR012908 PGAP1-like "; GO:0031227 NbS00004341g0008.1 protein AED:0.15 eAED:0.20 QI:0|0|0|0.85|0|0.28|7|0|437; (*GB) gi|255539443|ref|XP_002510786.1| (e_value=2e-42) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|C0LGS2|Y4361_ARATH (e_value=4e-20) Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1;; (*TAIR) AT3G11010.1 (e_value=8e-25) | Symbols: AtRLP34, RLP34 | receptor like protein 34 | chr3:3450988-3453672 REVERSE LENGTH=894;; (*ITAG) Solyc01g099250.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81298651-81301673 transcript_region:SL2.40ch01:81298651..81301673- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004341g0010.1 protein AED:0.11 eAED:0.21 QI:65|0|0|1|0|0|5|0|275; (*GB) gi|53749443|gb|AAU90299.1| (e_value=3e-40) Putative disease resistance protein I2C-5, identical [Solanum demissum];; (*ITAG) Solyc11g069620.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51346017-51349831 transcript_region:SL2.40ch11:51346017..51349831+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00008081g0014.1 protein AED:0.14 eAED:0.12 QI:63|0.85|0.66|0.93|0.64|0.6|15|0|805; (*GB) gi|255563064|ref|XP_002522536.1| (e_value=2e-19) hypothetical protein RCOM_1013810 [Ricinus communis];; (*TAIR) AT4G18490.1 (e_value=9e-11) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10204388-10208197 FORWARD LENGTH=756;; (*ITAG) Solyc02g077210.1.1 (e_value=5e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36777874-36780553 transcript_region:SL2.40ch02:36777874..36780553+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008081g0010.1 protein AED:0.10 eAED:0.11 QI:0|0.28|0.12|0.87|0.57|0.37|8|0|493; (*GB) gi|296090295|emb|CBI40114.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15910.1 (e_value=6e-38) | Symbols: | XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634;; (*ITAG) Solyc02g077170.1.1 (e_value=6e-166) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36768265-36772211 transcript_region:SL2.40ch02:36768265..36772211- functional_description:"X1 (Fragment) (AHRD V1 *--- Q7FSP8_MAIZE); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00007659g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|0.83|1|1|1|6|473|551; (*GB) gi|255540313|ref|XP_002511221.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|Q84P23|4CLL9_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2;; (*TAIR) AT5G63380.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562;; (*ITAG) Solyc03g111170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55870931-55876919 transcript_region:SL2.40ch03:55870931..55876919- go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9I3N1_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00048764g0001.1 protein AED:0.00 eAED:0.00 QI:933|1|0.66|1|0|0|3|0|333; (*GB) gi|225445484|ref|XP_002282063.1| (e_value=4e-139) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=2e-67) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=1e-68) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc09g090440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65305130-65306850 transcript_region:SL2.40ch09:65305130..65306850+ go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00032429g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.8|1|0.55|0.7|10|0|546; (*GB) gi|296084812|emb|CBI27694.3| (e_value=2e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54BW6|TTC27_DICDI (e_value=8e-22) Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium discoideum GN=ttc27 PE=3 SV=1;; (*TAIR) AT5G17270.1 (e_value=9e-143) | Symbols: | Protein prenylyltransferase superfamily protein | chr5:5679995-5685597 FORWARD LENGTH=899;; (*ITAG) Solyc07g008760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3728618-3747433 transcript_region:SL2.40ch07:3728618..3747433- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat (TPR)-containing protein-like protein (AHRD V1 ***- Q84NS6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00013336g0022.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|550; (*GB) gi|224122570|ref|XP_002330514.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P22413|ENPP1_HUMAN (e_value=1e-78) Ectonucleotide pyrophosphatase/phosphodiesterase family member 1 OS=Homo sapiens GN=ENPP1 PE=1 SV=2;; (*TAIR) AT4G29680.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr4:14538067-14539557 REVERSE LENGTH=496;; (*ITAG) Solyc07g037960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:41661646-41663103 transcript_region:SL2.40ch07:41661646..41663103- go_terms:GO:0004767 functional_description:"Ectonucleotide pyrophosphatase/phosphodiesterase 1 (AHRD V1 **** B6SGJ5_MAIZE); contains Interpro domain(s) IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase "; GO:0004767 NbS00013336g0004.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|321; (*GB) gi|225444944|ref|XP_002282373.1| (e_value=5e-100) PREDICTED: cytidine deaminase-like [Vitis vinifera];; (*SWP) sp|B4ESY3|CDD_PROMH (e_value=2e-33) Cytidine deaminase OS=Proteus mirabilis (strain HI4320) GN=cdd PE=3 SV=1;; (*TAIR) AT2G19570.1 (e_value=3e-84) | Symbols: CDA1, AT-CDA1, DESZ | cytidine deaminase 1 | chr2:8470598-8471503 REVERSE LENGTH=301;; (*ITAG) Solyc07g021750.1.1 (e_value=8e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:21306323-21307303 transcript_region:SL2.40ch07:21306323..21307303- go_terms:GO:0046087,GO:0016787,GO:0008270,GO:0003824 functional_description:"Cytidine deaminase (AHRD V1 ***- Q9XEX5_ARATH); contains Interpro domain(s) IPR006263 Cytidine deaminase, homodimeric "; GO:0046087,GO:0016787,GO:0008270,GO:0003824 NbS00013336g0018.1 protein AED:0.14 eAED:0.14 QI:0|0|0.66|1|1|0.66|3|346|249; (*GB) gi|224088023|ref|XP_002308295.1| (e_value=2e-102) predicted protein [Populus trichocarpa];; (*TAIR) AT2G19580.1 (e_value=1e-93) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270;; (*ITAG) Solyc07g025510.2.1 (e_value=3e-125) genomic_reference:SL2.40ch07 gene_region:28737718-28740341 transcript_region:SL2.40ch07:28737718..28740341+ go_terms:GO:0016021 functional_description:"Senescence-associated protein 5 (AHRD V1 ***- O81655_HEMSP); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00013336g0020.1 protein AED:0.07 eAED:0.07 QI:399|0.8|1|1|0.8|0.66|6|416|289; (*GB) gi|225444940|ref|XP_002282326.1| (e_value=2e-79) PREDICTED: thioredoxin-like 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q5TKD8|TRL2_ORYSJ (e_value=6e-72) Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1;; (*TAIR) AT4G29670.1 (e_value=1e-69) | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin 2 | chr4:14535772-14537108 REVERSE LENGTH=235;; (*ITAG) Solyc00g005840.2.1 (e_value=1e-99) genomic_reference:SL2.40ch00 gene_region:3425432-3431059 transcript_region:SL2.40ch00:3425432..3431059- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7MCJ1_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00013336g0007.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|59|494; (*GB) gi|225444938|ref|XP_002282308.1| (e_value=0.0) PREDICTED: ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [Vitis vinifera];; (*SWP) sp|O14638|ENPP3_HUMAN (e_value=4e-87) Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 OS=Homo sapiens GN=ENPP3 PE=1 SV=2;; (*TAIR) AT4G29680.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr4:14538067-14539557 REVERSE LENGTH=496;; (*ITAG) Solyc07g037950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:41645404-41646858 transcript_region:SL2.40ch07:41645404..41646858- go_terms:GO:0004767 functional_description:"Ectonucleotide pyrophosphatase/phosphodiesterase 1 (AHRD V1 **** B6SGJ5_MAIZE); contains Interpro domain(s) IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase "; GO:0004767 NbS00013336g0016.1 protein AED:0.24 eAED:0.24 QI:158|0.85|0.87|1|1|1|8|287|326; (*GB) gi|255546163|ref|XP_002514141.1| (e_value=5e-164) methyltransferase, putative [Ricinus communis];; (*TAIR) AT4G29590.1 (e_value=4e-146) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:14512736-14514404 REVERSE LENGTH=317;; (*ITAG) Solyc07g025520.2.1 (e_value=8e-154) genomic_reference:SL2.40ch07 gene_region:28770990-28778367 transcript_region:SL2.40ch07:28770990..28778367- go_terms:GO:0008152 functional_description:"Methyltransferase type 11 (AHRD V1 ***- B8GB91_CHLAD); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00013336g0014.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|1|1|2|0|100 NbS00029288g0003.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|1|1|2|0|393; (*GB) gi|225424803|ref|XP_002271160.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase-like 9-like [Vitis vinifera];; (*SWP) sp|O04536|GATL9_ARATH (e_value=0.0) Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1;; (*TAIR) AT1G70090.2 (e_value=0.0) | Symbols: GATL9, LGT8 | glucosyl transferase family 8 | chr1:26400927-26402099 FORWARD LENGTH=390;; (*ITAG) Solyc05g006510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1127274-1128431 transcript_region:SL2.40ch05:1127274..1128431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00029288g0001.1 protein AED:0.20 eAED:0.20 QI:334|0.8|0.90|0.90|0.9|0.81|11|684|365; (*GB) gi|59042884|gb|AAW83831.1| (e_value=0.0) E1 alpha subunit of pyruvate dehydrogenase [Petunia x hybrida];; (*SWP) sp|P52903|ODPA_SOLTU (e_value=0.0) Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G59900.1 (e_value=0.0) | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389;; (*ITAG) Solyc04g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64905-71276 transcript_region:SL2.40ch04:64905..71276- go_terms:GO:0050897,GO:0008270 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- B6TMS5_MAIZE); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0050897,GO:0008270 NbS00010364g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0.8|1|1|1|5|338|334; (*GB) gi|359474540|ref|XP_002277038.2| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100267862 [Vitis vinifera];; (*ITAG) Solyc08g076430.2.1 (e_value=2e-150) genomic_reference:SL2.40ch08 gene_region:57606501-57612289 transcript_region:SL2.40ch08:57606501..57612289+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014198g0009.1 protein AED:0.34 eAED:0.34 QI:244|0.83|0.73|1|0.88|0.78|19|0|804; (*GB) gi|225463508|ref|XP_002263911.1| (e_value=0.0) PREDICTED: uridine kinase-like protein 4 [Vitis vinifera];; (*SWP) sp|Q8VYB2|UKL3_ARATH (e_value=0.0) Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1;; (*TAIR) AT1G55810.3 (e_value=0.0) | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861273-20864003 FORWARD LENGTH=466;; (*ITAG) Solyc07g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00033877g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|1096; (*GB) gi|255544258|ref|XP_002513191.1| (e_value=0.0) synaptotagmin, putative [Ricinus communis];; (*SWP) sp|Q6DN14|MCTP1_HUMAN (e_value=2e-12) Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2;; (*TAIR) AT5G48060.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:19475296-19478878 FORWARD LENGTH=1036;; (*ITAG) Solyc01g086720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73436921-73440410 transcript_region:SL2.40ch01:73436921..73440410- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00033877g0007.1 protein AED:0.04 eAED:0.04 QI:249|1|1|1|0.66|0.8|10|0|276; (*GB) gi|239582692|dbj|BAH70368.1| (e_value=0.0) DnaJ-like protein [Nicotiana tabacum];; (*SWP) sp|C1DD87|DNAJ_LARHH (e_value=2e-44) Chaperone protein DnaJ OS=Laribacter hongkongensis (strain HLHK9) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G48030.1 (e_value=2e-83) | Symbols: GFA2 | gametophytic factor 2 | chr5:19466298-19469753 REVERSE LENGTH=456;; (*ITAG) Solyc01g086740.2.1 (e_value=3e-168) genomic_reference:SL2.40ch01 gene_region:73447785-73457353 transcript_region:SL2.40ch01:73447785..73457353+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TA99_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00016527g0002.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|1|1|2|0|261; (*GB) gi|224124036|ref|XP_002319229.1| (e_value=4e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRQ8|ATL51_ARATH (e_value=4e-55) RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2;; (*TAIR) AT3G03550.1 (e_value=3e-56) | Symbols: | RING/U-box superfamily protein | chr3:850391-851461 REVERSE LENGTH=356;; (*ITAG) Solyc01g081040.2.1 (e_value=1e-110) genomic_reference:SL2.40ch01 gene_region:72863145-72864248 transcript_region:SL2.40ch01:72863145..72864248+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016527g0011.1 protein AED:0.05 eAED:0.06 QI:0|0.72|0.5|1|0.81|0.66|12|480|632; (*GB) gi|359489162|ref|XP_002265726.2| (e_value=0.0) PREDICTED: protein SCAI homolog [Vitis vinifera];; (*SWP) sp|Q8C8N2|SCAI_MOUSE (e_value=2e-66) Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2;; (*TAIR) AT3G03570.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr3:857013-860105 FORWARD LENGTH=607;; (*ITAG) Solyc01g081030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72838886-72849697 transcript_region:SL2.40ch01:72838886..72849697- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_MOUSE)"; GO:0003714 NbS00016527g0007.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|0.33|0.25|4|0|447; (*GB) gi|225438894|ref|XP_002279137.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g37380, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SZT8|PP354_ARATH (e_value=1e-162) Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1;; (*TAIR) AT4G37380.1 (e_value=1e-163) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17572040-17573938 REVERSE LENGTH=632;; (*ITAG) Solyc01g081020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72835705-72837579 transcript_region:SL2.40ch01:72835705..72837579- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MAN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00007091g0006.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.85|1|8|366|240; (*GB) gi|224139604|ref|XP_002323190.1| (e_value=1e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5SSH8|NEUFC_MOUSE (e_value=1e-50) Neuferricin OS=Mus musculus GN=Cyb5d2 PE=1 SV=1;; (*TAIR) AT4G14965.1 (e_value=3e-123) | Symbols: AtMAPR4, MAPR4 | membrane-associated progesterone binding protein 4 | chr4:8551356-8553368 FORWARD LENGTH=245;; (*ITAG) Solyc07g044830.2.1 (e_value=9e-144) genomic_reference:SL2.40ch07 gene_region:55200188-55206864 transcript_region:SL2.40ch07:55200188..55206864+ go_terms:GO:0005515 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 *--- B2WEU6_PYRTR); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0005515 NbS00007091g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|224056873|ref|XP_002299066.1| (e_value=5e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|A7RP64|PNO1_NEMVE (e_value=7e-86) RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1;; (*TAIR) AT3G13230.1 (e_value=2e-127) | Symbols: | RNA-binding KH domain-containing protein | chr3:4270423-4271070 FORWARD LENGTH=215;; (*ITAG) Solyc06g082620.1.1 (e_value=2e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44670745-44671383 transcript_region:SL2.40ch06:44670745..44671383- go_terms:GO:0051082 functional_description:"RNA-binding protein PNO1-like protein (AHRD V1 **** D0MTT7_PHYIN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051082 NbS00007091g0008.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|104; (*ITAG) Solyc08g044310.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00016517g0007.1 protein AED:0.09 eAED:0.09 QI:151|1|1|1|0.66|0.25|4|76|592; (*GB) gi|255582014|ref|XP_002531804.1| (e_value=0.0) Root phototropism protein, putative [Ricinus communis];; (*SWP) sp|Q9C9Z7|Y3857_ARATH (e_value=0.0) BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana GN=At3g08570 PE=2 SV=2;; (*TAIR) AT3G08570.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:2602258-2604412 REVERSE LENGTH=617;; (*ITAG) Solyc09g048980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:31491067-31492825 transcript_region:SL2.40ch09:31491067..31492825+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00016517g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|0|235; (*GB) gi|225439111|ref|XP_002270168.1| (e_value=2e-112) PREDICTED: V-type proton ATPase subunit E1 [Vitis vinifera];; (*SWP) sp|Q9C9Z8|VATE2_ARATH (e_value=8e-112) V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1;; (*TAIR) AT3G08560.1 (e_value=6e-113) | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=235;; (*ITAG) Solyc08g081910.2.1 (e_value=2e-112) genomic_reference:SL2.40ch08 gene_region:61988688-61993931 transcript_region:SL2.40ch08:61988688..61993931- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00016517g0009.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.33|1|1|1|3|105|187; (*GB) gi|224139396|ref|XP_002323092.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=6e-40) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT2G38600.1 (e_value=2e-75) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr2:16145907-16146857 FORWARD LENGTH=251;; (*ITAG) Solyc06g062390.2.1 (e_value=1e-46) genomic_reference:SL2.40ch06 gene_region:35748252-35749569 transcript_region:SL2.40ch06:35748252..35749569- go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00036390g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.66|0.5|1|0.66|0.5|4|0|268; (*GB) gi|356547334|ref|XP_003542069.1| (e_value=4e-81) PREDICTED: uncharacterized protein LOC100815963 [Glycine max];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=4e-67) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT3G13890.2 (e_value=1e-78) | Symbols: MYB26 | myb domain protein 26 | chr3:4576744-4578027 REVERSE LENGTH=358;; (*ITAG) Solyc03g121740.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:63864556-63866340 transcript_region:SL2.40ch03:63864556..63866340- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9LVL0_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00019031g0005.1 protein AED:0.14 eAED:0.17 QI:132|0.25|0.2|0.8|1|1|5|0|737; (*GB) gi|359477907|ref|XP_002270439.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g04840-like [Vitis vinifera];; (*SWP) sp|Q9MAT2|PPR10_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1;; (*TAIR) AT1G04840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1362867-1364962 REVERSE LENGTH=665;; (*ITAG) Solyc09g092050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66563914-66566873 transcript_region:SL2.40ch09:66563914..66566873+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KE83_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019031g0013.1 protein AED:0.29 eAED:0.29 QI:175|1|0.88|1|1|1|9|115|493; (*GB) gi|225433604|ref|XP_002271213.1| (e_value=0.0) PREDICTED: TBC1 domain family member 13 [Vitis vinifera];; (*SWP) sp|Q8R3D1|TBC13_MOUSE (e_value=1e-56) TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1;; (*TAIR) AT4G13730.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:7970299-7974055 FORWARD LENGTH=449;; (*ITAG) Solyc09g092070.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66571826-66579705 transcript_region:SL2.40ch09:66571826..66579705+ go_terms:GO:0005515,GO:0005096 functional_description:"TBC1 domain family member 13 (AHRD V1 ***- D3BTH5_POLPA); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005515,GO:0005096 NbS00019031g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|178; (*GB) gi|359487723|ref|XP_003633637.1| (e_value=2e-95) PREDICTED: LOW QUALITY PROTEIN: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Vitis vinifera];; (*SWP) sp|Q5I0K7|ALG13_RAT (e_value=8e-35) UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1;; (*TAIR) AT4G16710.2 (e_value=4e-82) | Symbols: | glycosyltransferase family protein 28 | chr4:9398818-9399618 FORWARD LENGTH=176;; (*ITAG) Solyc12g009810.1.1 (e_value=3e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3011434-3014084 transcript_region:SL2.40ch12:3011434..3014084- go_terms:GO:0030259 functional_description:"UDP-N-acetylglucosamine transferase subunit alg13 (AHRD V1 **-- C1BGJ4_ONCMY); contains Interpro domain(s) IPR007235 Glycosyl transferase, family 28, C-terminal "; GO:0030259 NbS00003471g0012.1 protein AED:0.05 eAED:0.06 QI:0|0.95|0.80|1|0.9|0.80|21|580|2487; (*GB) gi|225459056|ref|XP_002285638.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254031 isoform 1 [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=0.0) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc04g076540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59021459-59037413 transcript_region:SL2.40ch04:59021459..59037413- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00003471g0013.1 protein AED:0.34 eAED:0.34 QI:100|0.92|0.8|1|0.92|0.93|15|0|594; (*GB) gi|359492959|ref|XP_002283738.2| (e_value=1e-99) PREDICTED: GATA transcription factor 24-like [Vitis vinifera];; (*SWP) sp|Q8GXL7|GAT24_ARATH (e_value=1e-53) GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2;; (*TAIR) AT3G21175.2 (e_value=3e-55) | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295;; (*ITAG) Solyc04g076530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59008668-59018815 transcript_region:SL2.40ch04:59008668..59018815+ go_terms:GO:0006355 functional_description:"GATA transcription factor 25 (AHRD V1 *--- B6TFI9_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0006355 NbS00003471g0210.1 protein AED:0.09 eAED:0.09 QI:260|1|0.75|1|0.66|0.5|4|0|414 NbS00003471g0209.1 protein AED:0.22 eAED:0.22 QI:218|0.88|0.8|1|0.88|0.9|10|417|526 NbS00006182g0004.1 protein AED:0.26 eAED:0.26 QI:136|1|1|1|0.77|0.7|10|167|551; (*GB) gi|359476981|ref|XP_002273131.2| (e_value=0.0) PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera];; (*SWP) sp|Q9V8W3|RABEP_DROME (e_value=9e-37) Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1;; (*TAIR) AT3G06540.1 (e_value=7e-178) | Symbols: REP, AthREP | Rab escort protein | chr3:2035201-2037662 REVERSE LENGTH=563;; (*ITAG) Solyc02g082730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40955269-40962065 transcript_region:SL2.40ch02:40955269..40962065+ go_terms:GO:0017137,GO:0004663 functional_description:"Rab gdp-dissociation inhibitor (AHRD V1 **** Q17D49_AEDAE); contains Interpro domain(s) IPR016664 Rab protein geranylgeranyltransferase component A, eukaryota "; GO:0017137,GO:0004663 NbS00017215g0011.1 protein AED:0.13 eAED:0.14 QI:0|0.16|0.14|0.85|0.5|0.28|7|0|637; (*GB) gi|359477716|ref|XP_003632012.1| (e_value=0.0) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 3 [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=4e-139) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=3e-140) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3444303-3445806 transcript_region:SL2.40ch09:3444303..3445806- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00017215g0106.1 protein AED:0.19 eAED:0.19 QI:0|0.57|0.5|1|0.42|0.5|8|0|475 NbS00017215g0103.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|79 NbS00017215g0105.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|66 NbS00038962g0005.1 protein AED:0.01 eAED:0.01 QI:138|1|1|1|1|1|3|231|129; (*GB) gi|225447458|ref|XP_002263660.1| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100258045 [Vitis vinifera];; (*TAIR) AT3G07600.1 (e_value=1e-14) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:2424300-2424954 REVERSE LENGTH=157;; (*ITAG) Solyc07g056200.2.1 (e_value=2e-38) genomic_reference:SL2.40ch07 gene_region:61370659-61371619 transcript_region:SL2.40ch07:61370659..61371619- functional_description:"NBS-LRR class disease resistance protein (AHRD V1 **-- D5L9G6_ORYSI)"; NbS00010192g0005.1 protein AED:0.28 eAED:0.28 QI:53|0.4|0.45|1|0.8|0.72|11|0|794; (*GB) gi|297737452|emb|CBI26653.3| (e_value=3e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2LVL1|LPXK_SYNAS (e_value=6e-33) Tetraacyldisaccharide 4'-kinase OS=Syntrophus aciditrophicus (strain SB) GN=lpxK PE=3 SV=1;; (*TAIR) AT3G20480.1 (e_value=1e-101) | Symbols: | tetraacyldisaccharide 4'-kinase family protein | chr3:7151497-7153369 REVERSE LENGTH=395;; (*ITAG) Solyc07g064710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63967340-63971297 transcript_region:SL2.40ch07:63967340..63971297+ go_terms:GO:0009245 functional_description:"Tetraacyldisaccharide 4&apos-kinase family protein (AHRD V1 ***- D7LB04_ARALY); contains Interpro domain(s) IPR003758 Tetraacyldisaccharide-1-P 4'-kinase "; GO:0009245 NbS00010192g0109.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0.45|1|0.6|0.63|11|0|867 NbS00010192g0106.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.57|0.85|0.66|0.57|7|363|193 NbS00010192g0104.1 protein AED:0.43 eAED:0.68 QI:0|0|0|0.4|1|1|5|0|167 NbC26108591g0001.1 protein AED:0.45 eAED:0.45 QI:0|0|0.5|1|0|0|2|47|87; (*GB) gi|194466185|gb|ACF74323.1| (e_value=1e-32) unknown [Arachis hypogaea];; (*TAIR) AT5G19860.1 (e_value=4e-32) | Symbols: | Protein of unknown function, DUF538 | chr5:6714533-6715837 REVERSE LENGTH=181;; (*ITAG) Solyc01g021670.2.1 (e_value=7e-46) genomic_reference:SL2.40ch01 gene_region:32538796-32541485 transcript_region:SL2.40ch01:32538796..32541485+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00048807g0005.1 protein AED:0.31 eAED:0.31 QI:283|0.66|0.85|1|0.5|0.42|7|259|212; (*GB) gi|359481735|ref|XP_003632666.1| (e_value=9e-108) PREDICTED: PRA1 family protein A2 isoform 3 [Vitis vinifera];; (*SWP) sp|Q9LZM7|PR1A1_ARATH (e_value=4e-87) PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1;; (*TAIR) AT5G02040.2 (e_value=3e-88) | Symbols: PRA1.A1 | prenylated RAB acceptor 1.A1 | chr5:401163-402471 FORWARD LENGTH=209;; (*ITAG) Solyc09g011310.2.1 (e_value=1e-110) genomic_reference:SL2.40ch09 gene_region:4653532-4658170 transcript_region:SL2.40ch09:4653532..4658170- functional_description:"PRA1 family protein (AHRD V1 ***- B4G0F8_MAIZE); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbC25195299g0001.1 protein AED:0.39 eAED:0.76 QI:75|0|0|1|0|0|2|0|42 NbS00000680g0003.1 protein AED:0.09 eAED:0.09 QI:77|0.9|1|1|1|1|11|287|634; (*GB) gi|224085523|ref|XP_002307605.1| (e_value=0.0) sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Populus trichocarpa];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=0.0) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=0.0) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc09g065560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59290557-59299087 transcript_region:SL2.40ch09:59290557..59299087- go_terms:GO:0015116 functional_description:"Sulfate transporter (AHRD V1 **** D7LTZ8_ARALY); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015116 NbS00014104g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0.25|1|1|1|4|0|691; (*GB) gi|225429942|ref|XP_002281263.1| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-104) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G25820.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr5:8997248-8999574 REVERSE LENGTH=654;; (*ITAG) Solyc08g066690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52723167-52726109 transcript_region:SL2.40ch08:52723167..52726109- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00014104g0007.1 protein AED:0.14 eAED:0.14 QI:58|1|0.75|1|1|1|4|0|675; (*GB) gi|225429942|ref|XP_002281263.1| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=4e-97) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT5G25820.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr5:8997248-8999574 REVERSE LENGTH=654;; (*ITAG) Solyc08g066680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52713239-52717107 transcript_region:SL2.40ch08:52713239..52717107- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00014104g0109.1 protein AED:0.24 eAED:0.24 QI:666|0.85|0.87|1|0.42|0.5|8|190|261 NbS00048870g0007.1 protein AED:0.28 eAED:0.40 QI:0|0.77|0.6|1|0.44|0.3|10|0|250; (*GB) gi|297738684|emb|CBI27929.3| (e_value=2e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|B5X0N6|KEA6_ARATH (e_value=4e-102) K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1;; (*TAIR) AT5G11800.1 (e_value=3e-103) | Symbols: KEA6, ATKEA6 | K+ efflux antiporter 6 | chr5:3803635-3808069 REVERSE LENGTH=597;; (*ITAG) Solyc05g026380.1.1 (e_value=4e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:41061587-41092289 transcript_region:SL2.40ch05:41061587..41092289- go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q46BZ7_METBF); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00006121g0015.1 protein AED:0.15 eAED:0.17 QI:0|0.62|0.66|1|0.87|0.88|9|0|1013; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*TAIR) AT2G25320.1 (e_value=0.0) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00006121g0016.1 protein AED:0.53 eAED:0.90 QI:0|1|0|1|1|1|2|0|596; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=2e-15) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1;; (*TAIR) AT2G25320.1 (e_value=0.0) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00006121g0004.1 protein AED:0.31 eAED:0.35 QI:91|1|0.5|1|0|0|2|0|405; (*GB) gi|225460674|ref|XP_002266272.1| (e_value=2e-175) PREDICTED: uncharacterized protein LOC100259010 [Vitis vinifera];; (*TAIR) AT1G21200.1 (e_value=4e-141) | Symbols: | sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443;; (*ITAG) Solyc12g100040.1.1 (e_value=5e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65281062-65282444 transcript_region:SL2.40ch12:65281062..65282444- functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00006121g0001.1 protein AED:0.53 eAED:0.53 QI:0|-1|0|1|-1|1|1|0|106 NbS00015382g0006.1 protein AED:0.00 eAED:0.00 QI:414|1|1|1|1|1|2|375|117; (*GB) gi|225437000|ref|XP_002277553.1| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera];; (*TAIR) AT2G17350.1 (e_value=7e-56) | Symbols: | unknown protein; Has 119 Blast hits to 93 proteins in 40 species: Archae - 0; Bacteria - 3; Metazoa - 18; Fungi - 12; Plants - 44; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | chr2:7545703-7546148 REVERSE LENGTH=117;; (*ITAG) Solyc06g065200.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:37043022-37047412 transcript_region:SL2.40ch06:37043022..37047412- functional_description:"Unknown Protein (AHRD V1)"; NbS00015382g0007.1 protein AED:0.23 eAED:0.23 QI:1160|1|0.75|1|1|1|4|0|551; (*GB) gi|385282636|gb|AFI57905.1| (e_value=0.0) cytosolic invertase 1 [Prunus persica];; (*TAIR) AT4G09510.1 (e_value=0.0) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021312-6023310 REVERSE LENGTH=558;; (*ITAG) Solyc06g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37049546-37053685 transcript_region:SL2.40ch06:37049546..37053685- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00027374g0003.1 protein AED:0.10 eAED:0.10 QI:191|1|0.6|1|1|1|5|574|231; (*GB) gi|225469778|ref|XP_002274430.1| (e_value=5e-42) PREDICTED: uncharacterized protein LOC100261101 [Vitis vinifera];; (*SWP) sp|O04616|Y4115_ARATH (e_value=3e-24) Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1;; (*TAIR) AT4G38100.1 (e_value=4e-32) | Symbols: | unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17887033-17888177 REVERSE LENGTH=193;; (*ITAG) Solyc11g010480.1.1 (e_value=2e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:3542067-3547598 transcript_region:SL2.40ch11:3542067..3547598+ functional_description:"Threonine endopeptidase (AHRD V1 *--- D7M9J7_ARALY)"; NbS00014258g0001.1 protein AED:0.12 eAED:0.12 QI:126|1|1|1|1|1|2|1491|116; (*GB) gi|317376136|sp|B7FKW7.1|CYNS_MEDTR (e_value=2e-60) RecName: Full=Cyanate hydratase; Short=Cyanase; AltName: Full=Cyanate hydrolase; AltName: Full=Cyanate lyase;; (*SWP) sp|B7FKW7|CYNS_MEDTR (e_value=7e-62) Cyanate hydratase OS=Medicago truncatula GN=CYN PE=2 SV=1;; (*TAIR) AT3G23490.1 (e_value=5e-58) | Symbols: CYN | cyanase | chr3:8423238-8424415 REVERSE LENGTH=168;; (*ITAG) Solyc09g090430.2.1 (e_value=1e-70) genomic_reference:SL2.40ch09 gene_region:65298327-65302769 transcript_region:SL2.40ch09:65298327..65302769- go_terms:GO:0008152,GO:0003677,GO:0009439 functional_description:"Cyanate hydratase (AHRD V1 ***- B6TTW1_MAIZE); contains Interpro domain(s) IPR008076 Cyanase "; GO:0008152,GO:0003677,GO:0009439 NbS00021749g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0|0.75|0.66|0.5|4|0|1014; (*GB) gi|225434510|ref|XP_002278414.1| (e_value=0.0) PREDICTED: ethylene-overproduction protein 1-like [Vitis vinifera];; (*SWP) sp|O65020|ETO1_ARATH (e_value=0.0) Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2;; (*TAIR) AT3G51770.2 (e_value=0.0) | Symbols: ETO1 | tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203998 REVERSE LENGTH=959;; (*ITAG) Solyc09g055310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:34651699-34661342 transcript_region:SL2.40ch09:34651699..34661342+ go_terms:GO:0005515 functional_description:"Ethylene-overproduction protein 1 (AHRD V1 **-- D7LTY2_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00024461g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|255586742|ref|XP_002533991.1| (e_value=3e-150) purine transporter, putative [Ricinus communis];; (*SWP) sp|Q9SY29|PUP4_ARATH (e_value=1e-123) Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1;; (*TAIR) AT1G30840.2 (e_value=1e-124) | Symbols: PUP4 | purine permease 4 | chr1:10974581-10975729 FORWARD LENGTH=382;; (*ITAG) Solyc02g082170.1.1 (e_value=2e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40455811-40457046 transcript_region:SL2.40ch02:40455811..40457046- go_terms:GO:0005345 functional_description:"Purine permease (AHRD V1 *--* B6TET5_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00005087g0013.1 protein AED:0.15 eAED:0.15 QI:300|0.77|0.8|1|0.66|0.8|10|433|566; (*GB) gi|350537047|ref|NP_001234789.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FUR2|IP5P2_ARATH (e_value=1e-93) Type I inositol 1,4,5-trisphosphate 5-phosphatase 2 OS=Arabidopsis thaliana GN=IP5P2 PE=1 SV=2;; (*TAIR) AT4G18010.2 (e_value=2e-174) | Symbols: IP5PII | myo-inositol polyphosphate 5-phosphatase 2 | chr4:9991194-9994099 REVERSE LENGTH=613;; (*ITAG) Solyc08g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1637048-1641994 transcript_region:SL2.40ch08:1637048..1641994- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00005087g0002.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.5|0.75|1|0.75|4|1599|180; (*GB) gi|8920621|gb|AAF81343.1|AC007767_23 (e_value=8e-81) Contains similarity to a peptide transport protein homolog F17L22.140 gi|7488004 from Arabidopsis thaliana BAC F17L22 gb|AL035527. It contains a POT family domain PF|00854. ESTs gb|BE038248, gb|T22680, gb|T04498, gb|R89961, gb|R30626, gb|R30389, gb|AA713063 and gb|AA585801 come from this gene [Arabidopsis thaliana];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=3e-82) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=2e-83) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g007060.2.1 (e_value=2e-101) genomic_reference:SL2.40ch08 gene_region:1629019-1634350 transcript_region:SL2.40ch08:1629019..1634350+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00005087g0112.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.42|0.85|0.5|0.42|7|0|218 NbS00005087g0114.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|478|633 NbS00005087g0108.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|4|0|164 NbS00005087g0113.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|134 NbS00024952g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|359480917|ref|XP_003632542.1| (e_value=6e-28) PREDICTED: auxin-induced protein X15-like [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=5e-18) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G37030.1 (e_value=5e-19) | Symbols: | SAUR-like auxin-responsive protein family | chr2:15553732-15554106 FORWARD LENGTH=124;; (*ITAG) Solyc06g065220.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37064749-37065042 transcript_region:SL2.40ch06:37064749..37065042- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00020250g0002.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|1|1|2|0|162; (*GB) gi|359494299|ref|XP_002264079.2| (e_value=5e-49) PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera];; (*SWP) sp|P93531|C71D7_SOLCH (e_value=1e-46) Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1;; (*TAIR) AT3G26330.1 (e_value=2e-34) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc08g005650.2.1 (e_value=1e-63) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00020250g0007.1 protein AED:0.21 eAED:0.25 QI:0|0.54|0.33|0.91|0.36|0.58|12|0|534; (*GB) gi|346983342|emb|CCD33018.1| (e_value=0.0) 8-hydroxy-copalyl diphosphate synthase [Nicotiana tabacum];; (*SWP) sp|Q38802|KSA_ARATH (e_value=8e-121) Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1;; (*TAIR) AT4G02780.1 (e_value=6e-122) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802;; (*ITAG) Solyc08g005710.2.1 (e_value=2e-152) genomic_reference:SL2.40ch08 gene_region:565586-570966 transcript_region:SL2.40ch08:565586..570966+ go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U6_9ORYZ); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00027088g0004.1 protein AED:0.06 eAED:0.06 QI:59|0.5|0.57|0.71|0.33|0.57|7|315|402; (*GB) gi|225460702|ref|XP_002267236.1| (e_value=2e-140) PREDICTED: 5'-3' exonuclease-like [Vitis vinifera];; (*TAIR) AT1G34380.2 (e_value=5e-127) | Symbols: | 5'-3' exonuclease family protein | chr1:12552839-12554299 REVERSE LENGTH=347;; (*ITAG) Solyc11g017230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8034744-8038440 transcript_region:SL2.40ch11:8034744..8038440- go_terms:GO:0008409,GO:0003824 functional_description:"DNA polymerase I (AHRD V1 ***- B6U7X8_MAIZE); contains Interpro domain(s) IPR002421 5'-3' exonuclease, N-terminal "; GO:0008409,GO:0003824 NbS00027088g0007.1 protein AED:0.15 eAED:0.55 QI:0|0|0.25|1|0|0|4|0|136; (*GB) gi|209167731|gb|ACI41890.1| (e_value=1e-27) chorismate mutase 2 [Petunia x hybrida];; (*TAIR) AT5G10870.1 (e_value=9e-17) | Symbols: ATCM2, CM2 | chorismate mutase 2 | chr5:3430691-3432272 REVERSE LENGTH=265;; (*ITAG) Solyc11g017240.1.1 (e_value=7e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8039271-8042521 transcript_region:SL2.40ch11:8039271..8042521- go_terms:GO:0009073,GO:0046417 functional_description:"Chorismate mutase 2 (AHRD V1 ***- D2CSU5_PETHY); contains Interpro domain(s) IPR008238 Chorismate mutase of the AroQ class, eukaryotic type "; GO:0009073,GO:0046417 NbS00022159g0005.1 protein AED:0.09 eAED:0.10 QI:460|0.66|0.71|0.85|0.83|0.71|7|0|772; (*GB) gi|225438426|ref|XP_002276373.1| (e_value=0.0) PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc02g082410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40679362-40683725 transcript_region:SL2.40ch02:40679362..40683725+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00027033g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|208; (*GB) gi|255547418|ref|XP_002514766.1| (e_value=5e-79) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O04479|LBD6_ARATH (e_value=3e-65) LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1;; (*TAIR) AT1G65620.4 (e_value=3e-66) | Symbols: AS2 | Lateral organ boundaries (LOB) domain family protein | chr1:24400146-24400745 FORWARD LENGTH=199;; (*ITAG) Solyc11g008830.1.1 (e_value=3e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3019777-3021109 transcript_region:SL2.40ch11:3019777..3021109+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00047015g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|906|405; (*GB) gi|77999245|gb|ABB16969.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q9SF40|RL4A_ARATH (e_value=0.0) 60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=0.0) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00047015g0004.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|51100730|dbj|BAD36744.1| (e_value=7e-23) APETALA2B [Ipomoea nil];; (*ITAG) Solyc10g084340.1.1 (e_value=2e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63251955-63255101 transcript_region:SL2.40ch10:63251955..63255101- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007836g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|319; (*GB) gi|156763850|emb|CAO99127.1| (e_value=2e-149) strictosidine synthase-like protein [Nicotiana tabacum];; (*SWP) sp|P94111|STS1_ARATH (e_value=8e-65) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=5e-138) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00007836g0004.1 protein AED:0.16 eAED:0.16 QI:239|0.6|0.5|1|0|0|6|270|215; (*GB) gi|255569845|ref|XP_002525886.1| (e_value=1e-61) small heat-shock protein, putative [Ricinus communis];; (*TAIR) AT1G06460.1 (e_value=1e-31) | Symbols: ACD32.1, ACD31.2 | alpha-crystallin domain 32.1 | chr1:1967308-1969414 REVERSE LENGTH=285;; (*ITAG) Solyc07g055720.2.1 (e_value=8e-93) genomic_reference:SL2.40ch07 gene_region:60979000-60980926 transcript_region:SL2.40ch07:60979000..60980926+ functional_description:"Heat shock protein Hsp20 (AHRD V1 *-*- D4H6X0_DENA2); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00023392g0006.1 protein AED:0.02 eAED:0.02 QI:195|1|1|1|0.5|0.33|3|309|227; (*GB) gi|255542622|ref|XP_002512374.1| (e_value=5e-81) cyclin-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q75HV0|CCP31_ORYSJ (e_value=2e-64) Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1;; (*TAIR) AT3G05327.1 (e_value=9e-57) | Symbols: | Cyclin family protein | chr3:1517581-1518399 REVERSE LENGTH=212;; (*ITAG) Solyc01g098930.2.1 (e_value=4e-148) genomic_reference:SL2.40ch01 gene_region:81062071-81063123 transcript_region:SL2.40ch01:81062071..81063123- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin (AHRD V1 **** D8UD80_VOLCA); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00023392g0005.1 protein AED:0.21 eAED:0.21 QI:110|1|0.66|1|1|1|3|0|561; (*GB) gi|359487099|ref|XP_002273427.2| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 25-like [Vitis vinifera];; (*SWP) sp|Q94CB1|PME25_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1;; (*TAIR) AT3G10720.2 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:3354639-3357581 REVERSE LENGTH=619;; (*ITAG) Solyc01g098940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81064496-81068945 transcript_region:SL2.40ch01:81064496..81068945- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPV5_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00043807g0001.1 protein AED:0.19 eAED:0.21 QI:0|1|0.33|1|1|1|3|0|770; (*GB) gi|224119542|ref|XP_002318100.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=3e-39) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT5G63190.2 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56314266-56320093 transcript_region:SL2.40ch03:56314266..56320093- go_terms:GO:0005515 functional_description:"Programmed cell death 4a (AHRD V1 *--- D3TLD2_GLOMM); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00043807g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.42|0.33|0.42|7|0|257; (*ITAG) Solyc01g094420.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00005209g0001.1 protein AED:0.16 eAED:0.16 QI:1|0.86|0.81|1|0.6|0.62|16|1522|775; (*GB) gi|296081706|emb|CBI20711.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G47430.1 (e_value=6e-13) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr5:19235819-19240596 REVERSE LENGTH=892;; (*ITAG) Solyc08g061890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46859866-46866346 transcript_region:SL2.40ch08:46859866..46866346- go_terms:GO:0005634,GO:0008270,GO:0000151 functional_description:"Retinoblastoma binding protein 6 (AHRD V1 *--- Q866R2_HORSE); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0008270,GO:0000151 NbS00005209g0012.1 protein AED:0.23 eAED:0.23 QI:186|1|1|1|0.8|0.81|11|1032|393; (*GB) gi|171988284|gb|ACB59354.1| (e_value=0.0) peroxisome biogenesis factor 10 [Nicotiana tabacum];; (*SWP) sp|Q9SYU4|PEX10_ARATH (e_value=0.0) Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10 PE=1 SV=1;; (*TAIR) AT2G26350.1 (e_value=0.0) | Symbols: PEX10, ATPEX10 | peroxin 10 | chr2:11217767-11220415 REVERSE LENGTH=381;; (*ITAG) Solyc04g080930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62570449-62575544 transcript_region:SL2.40ch04:62570449..62575544- go_terms:GO:0008022 functional_description:"Peroxisome biogenesis factor 10 (AHRD V1 **-- B9U2H6_TOBAC); contains Interpro domain(s) IPR006845 Pex, N-terminal "; GO:0008022 NbS00020752g0007.1 protein AED:0.16 eAED:0.17 QI:0|1|0.33|1|1|1|3|0|532; (*GB) gi|255542480|ref|XP_002512303.1| (e_value=3e-62) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P37707|B2_DAUCA (e_value=3e-13) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G32910.1 (e_value=8e-48) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:13959685-13961989 FORWARD LENGTH=691;; (*ITAG) Solyc09g074380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61668455-61671089 transcript_region:SL2.40ch09:61668455..61671089- functional_description:"N-rich protein (Fragment) (AHRD V1 *--- A6N0R0_ORYSI); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00020752g0006.1 protein AED:0.19 eAED:0.19 QI:255|0.85|0.87|1|0.57|0.62|8|278|331; (*GB) gi|359479766|ref|XP_002270442.2| (e_value=1e-150) PREDICTED: mitochondrial substrate carrier family protein ucpB-like [Vitis vinifera];; (*SWP) sp|B0G143|UCPB_DICDI (e_value=7e-59) Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1;; (*TAIR) AT4G03115.1 (e_value=1e-143) | Symbols: | Mitochondrial substrate carrier family protein | chr4:1383366-1385485 REVERSE LENGTH=314;; (*ITAG) Solyc09g074370.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:61663674-61667766 transcript_region:SL2.40ch09:61663674..61667766- go_terms:GO:0015367 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q2QPD3_ORYSJ); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00017905g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.71|0.62|1|0.71|0.5|8|121|333; (*GB) gi|225457003|ref|XP_002282364.1| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100245004 [Vitis vinifera];; (*TAIR) AT5G62960.1 (e_value=1e-102) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc03g112840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57198559-57200249 transcript_region:SL2.40ch03:57198559..57200249- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00029281g0009.1 protein AED:0.07 eAED:0.08 QI:14|1|0.71|1|0.66|0.42|7|0|483; (*GB) gi|302143504|emb|CBI22065.3| (e_value=1e-167) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84LH8|PIF5_ARATH (e_value=4e-57) Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1;; (*TAIR) AT3G59060.4 (e_value=3e-58) | Symbols: PIL6, PIF5 | phytochrome interacting factor 3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444;; (*ITAG) Solyc07g043580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54826883-54829837 transcript_region:SL2.40ch07:54826883..54829837+ go_terms:GO:0005515,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00029281g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0.8|1|1|0.9|10|0|357; (*GB) gi|225446767|ref|XP_002278419.1| (e_value=0.0) PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic [Vitis vinifera];; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=0.0) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT1G06690.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:2049742-2052039 REVERSE LENGTH=377;; (*ITAG) Solyc07g043570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54807979-54814690 transcript_region:SL2.40ch07:54807979..54814690+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KG57_ARALY); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00011886g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.25|0.2|0.6|1|1|5|0|681; (*GB) gi|19568935|gb|AAL91978.1|AF483209_1 (e_value=0.0) putative trehalose synthase [Solanum tuberosum];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=0.0) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc10g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2108916-2114253 transcript_region:SL2.40ch10:2108916..2114253- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00038898g0003.1 protein AED:0.12 eAED:0.12 QI:21|1|0.75|1|1|1|4|0|119; (*GB) gi|356497486|ref|XP_003517591.1| (e_value=3e-68) PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Glycine max];; (*SWP) sp|Q9FR53|TOR_ARATH (e_value=1e-67) Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1;; (*TAIR) AT1G50030.2 (e_value=1e-68) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2454;; (*ITAG) Solyc01g106770.2.1 (e_value=4e-76) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00038898g0004.1 protein AED:0.14 eAED:0.14 QI:5|0.83|0.28|1|1|0.85|7|0|264; (*GB) gi|255554412|ref|XP_002518245.1| (e_value=2e-145) fkbp-rapamycin associated protein, putative [Ricinus communis];; (*SWP) sp|Q9FR53|TOR_ARATH (e_value=3e-133) Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1;; (*TAIR) AT1G50030.1 (e_value=2e-134) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2481;; (*ITAG) Solyc01g106770.2.1 (e_value=7e-153) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00020634g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|255647630|gb|ACU24278.1| (e_value=2e-75) unknown [Glycine max];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=8e-27) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G17800.1 (e_value=9e-63) | Symbols: | Predicted AT-hook DNA-binding family protein | chr4:9895549-9896427 REVERSE LENGTH=292;; (*ITAG) Solyc01g080960.2.1 (e_value=2e-93) genomic_reference:SL2.40ch01 gene_region:72799732-72800762 transcript_region:SL2.40ch01:72799732..72800762- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR79_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00008242g0012.1 protein AED:0.10 eAED:0.10 QI:47|1|1|1|0.85|0.75|8|282|643; (*GB) gi|356522474|ref|XP_003529871.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc12g044890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45693139-45696688 transcript_region:SL2.40ch12:45693139..45696688- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00008242g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.4|0.9|0.66|0.7|10|0|438; (*GB) gi|255572949|ref|XP_002527405.1| (e_value=0.0) Protein SEY1, putative [Ricinus communis];; (*SWP) sp|P93042|RHD3_ARATH (e_value=2e-180) Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1;; (*TAIR) AT3G13870.2 (e_value=0.0) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738;; (*ITAG) Solyc12g044900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45698218-45706936 transcript_region:SL2.40ch12:45698218..45706936+ functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; NbS00008242g0016.1 protein AED:0.18 eAED:0.18 QI:323|1|1|1|0.94|0.94|19|430|845; (*GB) gi|350539595|ref|NP_001234465.1| (e_value=0.0) beta-galactosidase precursor [Solanum lycopersicum];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g044880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45685680-45691694 transcript_region:SL2.40ch12:45685680..45691694+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q546T5_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00032196g0006.1 protein AED:0.11 eAED:0.12 QI:0|0.33|0.5|1|0|0.5|4|627|447; (*GB) gi|9858771|gb|AAG01118.1|AF273333_3 (e_value=0.0) BAC19.3 [Solanum lycopersicum];; (*SWP) sp|Q54FD6|TF2B_DICDI (e_value=6e-25) Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1;; (*TAIR) AT4G36650.1 (e_value=0.0) | Symbols: ATPBRP, PBRP | plant-specific TFIIB-related protein | chr4:17283283-17285527 REVERSE LENGTH=503;; (*ITAG) Solyc02g085470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42926826-42930305 transcript_region:SL2.40ch02:42926826..42930305- go_terms:GO:0000182 functional_description:"Transcription initiation factor IIB (AHRD V1 *-*- B5XD83_SALSA); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0000182 NbS00032196g0007.1 protein AED:0.29 eAED:0.37 QI:80|0|0|1|0|0|3|0|274; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-32) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00021142g0006.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|258; (*GB) gi|359494732|ref|XP_002282600.2| (e_value=8e-15) PREDICTED: uncharacterized protein LOC100244150 [Vitis vinifera];; (*ITAG) Solyc09g091060.2.1 (e_value=9e-57) genomic_reference:SL2.40ch09 gene_region:65747962-65748767 transcript_region:SL2.40ch09:65747962..65748767- functional_description:"Unknown Protein (AHRD V1)"; NbS00021142g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.94|0.88|1|0.94|0.94|18|273|894; (*GB) gi|255554308|ref|XP_002518194.1| (e_value=0.0) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT4G13550.1 (e_value=0.0) | Symbols: | triglyceride lipases;triglyceride lipases | chr4:7871251-7876160 REVERSE LENGTH=715;; (*ITAG) Solyc09g091050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65737600-65747718 transcript_region:SL2.40ch09:65737600..65747718+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00010815g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|172; (*GB) gi|57013950|ref|YP_173422.1| (e_value=2e-71) hypothetical protein NitaMp080 [Nicotiana tabacum];; (*ITAG) Solyc03g051590.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:17381098-17383528 transcript_region:SL2.40ch03:17381098..17383528- functional_description:"ORF104 (AHRD V1 *-*- B6VJU0_VITVI)"; NbS00010815g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|0.75|1|1|4|606|204; (*GB) gi|82400150|gb|ABB72814.1| (e_value=3e-98) putative 40S ribosomal protein S8-like protein [Solanum tuberosum];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=9e-95) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=6e-93) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc07g065170.2.1 (e_value=3e-101) genomic_reference:SL2.40ch07 gene_region:64272755-64275084 transcript_region:SL2.40ch07:64272755..64275084- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- B4FGG1_MAIZE); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00014959g0004.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|260; (*GB) gi|158518418|sp|P83326.2|PMEI_ACTDE (e_value=2e-37) RecName: Full=Pectinesterase inhibitor; AltName: Full=AdPMEI; Short=PMEI; AltName: Full=Pectin methylesterase inhibitor; Flags: Precursor;; (*SWP) sp|P83326|PMEI_ACTDE (e_value=6e-39) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*TAIR) AT3G17220.1 (e_value=1e-20) | Symbols: ATPMEI2, PMEI2 | pectin methylesterase inhibitor 2 | chr3:5883328-5883849 REVERSE LENGTH=173;; (*ITAG) Solyc03g112180.1.1 (e_value=3e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56728543-56729061 transcript_region:SL2.40ch03:56728543..56729061+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** A7IZL3_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00048617g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|20149052|gb|AAM12781.1| (e_value=1e-53) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=2e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc10g052530.1.1 (e_value=9e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48389880-48390317 transcript_region:SL2.40ch10:48389880..48390317- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00048617g0005.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|20149052|gb|AAM12781.1| (e_value=3e-53) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=3e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=9e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00048617g0003.1 protein AED:0.76 eAED:0.77 QI:0|0|0|0.25|1|1|4|0|347; (*GB) gi|225451363|ref|XP_002263205.1| (e_value=6e-82) PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Vitis vinifera];; (*SWP) sp|Q7X6Y7|MMD1_ARATH (e_value=6e-63) PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana GN=MMD1 PE=2 SV=1;; (*TAIR) AT1G66170.1 (e_value=4e-64) | Symbols: MMD1 | RING/FYVE/PHD zinc finger superfamily protein | chr1:24638793-24641222 REVERSE LENGTH=704;; (*ITAG) Solyc11g011560.1.1 (e_value=2e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4628796-4631184 transcript_region:SL2.40ch11:4628796..4631184+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00039040g0005.1 protein AED:0.30 eAED:0.31 QI:133|1|0.75|1|1|1|4|0|225; (*GB) gi|225448093|ref|XP_002276574.1| (e_value=5e-69) PREDICTED: partner of Y14 and mago-like [Vitis vinifera];; (*TAIR) AT1G11400.3 (e_value=2e-45) | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-3839978 FORWARD LENGTH=204;; (*ITAG) Solyc01g104460.2.1 (e_value=6e-114) genomic_reference:SL2.40ch01 gene_region:84688779-84693304 transcript_region:SL2.40ch01:84688779..84693304+ go_terms:GO:0005515 functional_description:"Partner of Y14 and mago (AHRD V1 *-*- WIBG_CULQU); contains Interpro domain(s) IPR015362 Exon junction complex, Pym "; GO:0005515 NbS00039040g0002.1 protein AED:0.37 eAED:0.38 QI:48|0.8|0.83|1|0.8|0.83|6|0|189; (*GB) gi|76160923|gb|ABA40425.1| (e_value=1e-113) unknown [Solanum tuberosum];; (*SWP) sp|A4FV84|MRT4_BOVIN (e_value=5e-45) mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1;; (*TAIR) AT1G25260.1 (e_value=2e-86) | Symbols: | Ribosomal protein L10 family protein | chr1:8854163-8855766 REVERSE LENGTH=235;; (*ITAG) Solyc01g104470.2.1 (e_value=4e-117) genomic_reference:SL2.40ch01 gene_region:84693611-84696766 transcript_region:SL2.40ch01:84693611..84696766- go_terms:GO:0003735 functional_description:"mRNA turnover protein 4 homolog (AHRD V1 **-- B5X718_SALSA)"; GO:0003735 NbS00012955g0014.1 protein AED:0.20 eAED:0.20 QI:354|0.75|0.8|1|0.25|0.4|5|451|77 NbS00012955g0010.1 protein AED:0.22 eAED:0.22 QI:39|0.6|0.83|1|1|1|6|415|400; (*GB) gi|255539300|ref|XP_002510715.1| (e_value=3e-119) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G20830.1 (e_value=1e-101) | Symbols: MCD1 | multiple chloroplast division site 1 | chr1:7242933-7244736 FORWARD LENGTH=349;; (*ITAG) Solyc08g042080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29022159-29030975 transcript_region:SL2.40ch08:29022159..29030975- functional_description:"Unknown Protein (AHRD V1)"; NbS00012955g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|454; (*GB) gi|255539278|ref|XP_002510704.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYE5|E1312_ARATH (e_value=2e-108) Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1;; (*TAIR) AT4G29360.2 (e_value=4e-111) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:14451881-14453687 REVERSE LENGTH=488;; (*ITAG) Solyc12g040860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:40853563-40855400 transcript_region:SL2.40ch12:40853563..40855400- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00012955g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|0.8|1|1|1|5|361|218; (*GB) gi|356517227|ref|XP_003527290.1| (e_value=6e-39) PREDICTED: uncharacterized protein LOC100527765 [Glycine max];; (*TAIR) AT1G42960.1 (e_value=2e-35) | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168;; (*ITAG) Solyc12g094630.1.1 (e_value=1e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63147638-63151573 transcript_region:SL2.40ch12:63147638..63151573+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040361g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|508; (*GB) gi|147767466|emb|CAN66716.1| (e_value=0.0) hypothetical protein VITISV_041185 [Vitis vinifera];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc04g011460.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:3900842-3902368 transcript_region:SL2.40ch04:3900842..3902368- functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC)"; NbS00040361g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|89; (*ITAG) Solyc04g011470.1.1 (e_value=7e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:3911982-3913070 transcript_region:SL2.40ch04:3911982..3913070+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040361g0003.1 protein AED:0.12 eAED:0.12 QI:520|0|0.5|1|0|0.5|2|0|477; (*GB) gi|38325815|gb|AAR17080.1| (e_value=0.0) heat shock protein 70-3 [Nicotiana tabacum];; (*SWP) sp|P22953|HSP7A_ARATH (e_value=0.0) Heat shock 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSP70-1 PE=1 SV=3;; (*TAIR) AT5G02500.1 (e_value=0.0) | Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00009877g0002.1 protein AED:0.84 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|116 NbS00009877g0004.1 protein AED:0.30 eAED:0.64 QI:0|0|0|1|0|0|3|0|205; (*GB) gi|297813695|ref|XP_002874731.1| (e_value=8e-18) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O64477|Y2913_ARATH (e_value=1e-17) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=8e-19) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g053220.1.1 (e_value=2e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00009877g0003.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|224145545|ref|XP_002325680.1| (e_value=3e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g053220.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00053630g0004.1 protein AED:0.28 eAED:0.30 QI:185|0.44|0.6|1|0.77|0.8|10|0|863; (*GB) gi|1171577|emb|CAA64636.1| (e_value=0.0) hsr201 [Nicotiana tabacum];; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=0.0) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=2e-169) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc07g049660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57349065-57351095 transcript_region:SL2.40ch07:57349065..57351095+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00044567g0006.1 protein AED:0.01 eAED:0.01 QI:617|1|1|1|0.5|0.33|3|406|424; (*GB) gi|255561981|ref|XP_002521999.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G04350.1 (e_value=3e-167) | Symbols: | Plant protein of unknown function (DUF946) | chr3:1153972-1156469 REVERSE LENGTH=567;; (*ITAG) Solyc05g055910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64508467-64511290 transcript_region:SL2.40ch05:64508467..64511290- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00044567g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|396; (*GB) gi|255561975|ref|XP_002521996.1| (e_value=7e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G33320.1 (e_value=5e-35) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602;; (*ITAG) Solyc05g055920.2.1 (e_value=1e-155) genomic_reference:SL2.40ch05 gene_region:64512410-64514665 transcript_region:SL2.40ch05:64512410..64514665- functional_description:"C2 domain-containing protein (AHRD V1 *--- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00033541g0011.1 protein AED:0.24 eAED:0.24 QI:178|1|1|1|0.90|0.83|12|327|359; (*GB) gi|1848212|emb|CAA72092.1| (e_value=0.0) protein disulfide-isomerase precursor [Nicotiana tabacum];; (*SWP) sp|Q75M08|PDI21_ORYSJ (e_value=0.0) Protein disulfide isomerase-like 2-1 OS=Oryza sativa subsp. japonica GN=PDIL2-1 PE=2 SV=2;; (*TAIR) AT2G47470.1 (e_value=0.0) | Symbols: ATPDIL2-1, UNE5, MEE30, PDI11, ATPDI11 | thioredoxin family protein | chr2:19481503-19483683 FORWARD LENGTH=361;; (*ITAG) Solyc01g100320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82146954-82153414 transcript_region:SL2.40ch01:82146954..82153414- go_terms:GO:0003756 functional_description:"Thioredoxin/protein disulfide isomerase (AHRD V1 **** Q2U681_ASPOR); contains Interpro domain(s) IPR005788 Disulphide isomerase "; GO:0003756 NbS00033541g0012.1 protein AED:0.08 eAED:0.08 QI:0|0.62|0.77|1|0.87|1|9|283|281; (*GB) gi|357123026|ref|XP_003563214.1| (e_value=2e-56) PREDICTED: zinc finger matrin-type protein 2-like [Brachypodium distachyon];; (*SWP) sp|Q9CPW7|ZMAT2_MOUSE (e_value=7e-24) Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1;; (*TAIR) AT3G05760.1 (e_value=2e-58) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr3:1707981-1709910 FORWARD LENGTH=202;; (*ITAG) Solyc01g100330.2.1 (e_value=6e-73) genomic_reference:SL2.40ch01 gene_region:82155691-82161827 transcript_region:SL2.40ch01:82155691..82161827+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger matrin type 2 (AHRD V1 ***- Q6DEN8_XENTR); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00033541g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|391; (*GB) gi|225437509|ref|XP_002275068.1| (e_value=4e-91) PREDICTED: uncharacterized protein LOC100262334 [Vitis vinifera];; (*TAIR) AT3G62630.1 (e_value=4e-75) | Symbols: | Protein of unknown function (DUF1645) | chr3:23163937-23165079 REVERSE LENGTH=380;; (*ITAG) Solyc01g100310.2.1 (e_value=1e-86) genomic_reference:SL2.40ch01 gene_region:82140047-82141429 transcript_region:SL2.40ch01:82140047..82141429+ functional_description:"Calmodulin-binding protein (AHRD V1 *-*- D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00058479g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.93|1|0.85|0.93|15|581|414; (*GB) gi|329741905|gb|AEB98600.1| (e_value=0.0) alpha-galactosidase [Nicotiana tabacum];; (*SWP) sp|Q42656|AGAL_COFAR (e_value=0.0) Alpha-galactosidase OS=Coffea arabica PE=1 SV=1;; (*TAIR) AT5G08370.1 (e_value=0.0) | Symbols: AtAGAL2, AGAL2 | alpha-galactosidase 2 | chr5:2691116-2693441 REVERSE LENGTH=396;; (*ITAG) Solyc03g019790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6715747-6721534 transcript_region:SL2.40ch03:6715747..6721534- go_terms:GO:0004557,GO:0008456 functional_description:"Alpha-galactosidase (AHRD V1 **** Q9SP05_SOLLC); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557,GO:0008456 NbC25499383g0002.1 protein AED:0.19 eAED:0.19 QI:68|-1|0|1|-1|0|1|0|168; (*GB) gi|40557129|gb|AAR87851.1| (e_value=7e-71) fertilization-related kinase 2 [Solanum chacoense];; (*SWP) sp|O14299|WIS4_SCHPO (e_value=3e-26) MAP kinase kinase kinase wis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wis4 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=2e-43) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065660.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00044318g0004.1 protein AED:0.25 eAED:0.83 QI:0|0|0|1|1|1|2|0|202; (*GB) gi|10798752|dbj|BAB16428.1| (e_value=3e-18) P-rich protein EIG-I30 [Nicotiana tabacum];; (*ITAG) Solyc08g078870.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59728469-59728909 transcript_region:SL2.40ch08:59728469..59728909+ go_terms:GO:0008289 functional_description:"Proline-rich protein (AHRD V1 **-- Q41125_PHAVU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00044318g0006.1 protein AED:0.36 eAED:0.47 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|4454097|emb|CAA59472.1| (e_value=3e-14) hybrid proline-rich protein [Catharanthus roseus];; (*SWP) sp|Q01595|CCDP_MAIZE (e_value=1e-13) Cortical cell-delineating protein OS=Zea mays PE=2 SV=1;; (*TAIR) AT4G12490.1 (e_value=1e-14) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7409830-7410378 REVERSE LENGTH=182;; (*ITAG) Solyc08g078930.1.1 (e_value=2e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:59751978-59752385 transcript_region:SL2.40ch08:59751978..59752385- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6T026_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00044318g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|59 NbS00032025g0109.1 protein AED:0.10 eAED:0.13 QI:0|1|0|1|0|0|2|0|607 NbS00032025g0111.1 protein AED:0.16 eAED:0.16 QI:138|1|1|1|0.82|0.83|18|503|641 NbS00032025g0102.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|99 NbS00032025g0110.1 protein AED:0.35 eAED:0.35 QI:35|0.8|0.83|1|0.4|0.83|6|279|205 NbS00002728g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|103 NbS00002728g0011.1 protein AED:0.05 eAED:0.05 QI:234|1|1|1|1|1|2|193|457; (*GB) gi|209954701|dbj|BAG80541.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|O22822|U74F2_ARATH (e_value=3e-153) UDP-glycosyltransferase 74F2 OS=Arabidopsis thaliana GN=UGT74F2 PE=1 SV=1;; (*TAIR) AT2G43820.1 (e_value=2e-154) | Symbols: GT, UGT74F2, ATSAGT1, SGT1, SAGT1 | UDP-glucosyltransferase 74F2 | chr2:18152279-18153715 FORWARD LENGTH=449;; (*ITAG) Solyc08g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:990397-992206 transcript_region:SL2.40ch08:990397..992206- go_terms:GO:0080002 functional_description:"UDP-glucose salicylic acid glucosyltransferase (AHRD V1 **** Q9M6E7_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00000298g0011.1 protein AED:0.02 eAED:0.02 QI:329|1|1|1|0.85|0.75|8|136|585; (*GB) gi|225429183|ref|XP_002275785.1| (e_value=0.0) PREDICTED: pyruvate kinase isozyme A, chloroplastic [Vitis vinifera];; (*SWP) sp|Q43117|KPYA_RICCO (e_value=0.0) Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT3G22960.1 (e_value=0.0) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc01g106780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86310720-86314473 transcript_region:SL2.40ch01:86310720..86314473+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9GIN5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00000298g0001.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0.14|0.85|1|1|7|91|978; (*GB) gi|147812462|emb|CAN75064.1| (e_value=1e-40) hypothetical protein VITISV_025472 [Vitis vinifera];; (*TAIR) AT2G16270.1 (e_value=4e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16630.1); Has 1844 Blast hits to 1256 proteins in 271 species: Archae - 6; Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91; Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink). | chr2:7045744-7048313 REVERSE LENGTH=759;; (*ITAG) Solyc01g106750.1.1 (e_value=6e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86252686-86255230 transcript_region:SL2.40ch01:86252686..86255230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000298g0014.1 protein AED:0.13 eAED:0.14 QI:344|0.91|0.86|1|0.89|0.91|58|33|2466; (*GB) gi|359475536|ref|XP_002275591.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase TOR-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FR53|TOR_ARATH (e_value=0.0) Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1;; (*TAIR) AT1G50030.1 (e_value=0.0) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2481;; (*ITAG) Solyc01g106770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00000298g0016.1 protein AED:0.21 eAED:0.26 QI:0|0.5|0.14|1|0.33|0.57|7|0|302; (*GB) gi|224132294|ref|XP_002328233.1| (e_value=9e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CX11|UTP23_MOUSE (e_value=3e-25) rRNA-processing protein UTP23 homolog OS=Mus musculus GN=Utp23 PE=2 SV=1;; (*TAIR) AT2G34570.1 (e_value=8e-77) | Symbols: MEE21 | PIN domain-like family protein | chr2:14563048-14564681 REVERSE LENGTH=281;; (*ITAG) Solyc10g084740.1.1 (e_value=6e-50) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63478512-63484024 transcript_region:SL2.40ch10:63478512..63484024- functional_description:"rRNA-processing protein utp23 (AHRD V1 *--- UTP23_SCHPO); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; NbS00000485g0008.1 protein AED:0.27 eAED:0.27 QI:81|1|1|1|0.8|0.83|6|329|238; (*GB) gi|225442156|ref|XP_002275541.1| (e_value=6e-155) PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera];; (*SWP) sp|Q9FJA6|RS33_ARATH (e_value=7e-146) 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1;; (*TAIR) AT5G35530.1 (e_value=5e-147) | Symbols: | Ribosomal protein S3 family protein | chr5:13710355-13712192 REVERSE LENGTH=248;; (*ITAG) Solyc08g061960.2.1 (e_value=4e-157) genomic_reference:SL2.40ch08 gene_region:47365396-47368389 transcript_region:SL2.40ch08:47365396..47368389+ go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TLR8_ELAGV); contains Interpro domain(s) IPR005703 Ribosomal protein S3, eukaryotic/archaeal "; GO:0003735 NbS00024307g0009.1 protein AED:0.05 eAED:0.05 QI:105|0.8|0.66|1|1|1|6|148|268; (*GB) gi|359475615|ref|XP_003631715.1| (e_value=3e-36) PREDICTED: uncharacterized protein LOC100854527 [Vitis vinifera];; (*ITAG) Solyc10g047670.1.1 (e_value=2e-55) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:37073000-37077377 transcript_region:SL2.40ch10:37073000..37077377+ go_terms:GO:0008270,GO:0005622 functional_description:"Receptor expression-enhancing protein 2 (AHRD V1 *--- B2WDX2_PYRTR); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0008270,GO:0005622 NbS00024307g0010.1 protein AED:0.24 eAED:0.24 QI:270|1|0.94|1|1|0.94|18|137|553; (*GB) gi|225429271|ref|XP_002266390.1| (e_value=0.0) PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Vitis vinifera];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=0.0) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.1 (e_value=0.0) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977727-5981899 REVERSE LENGTH=607;; (*ITAG) Solyc01g106080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00024307g0011.1 protein AED:0.49 eAED:0.80 QI:0|0|0|0.66|1|1|3|0|181; (*GB) gi|30144414|gb|AAP15456.1| (e_value=4e-13) methylmalonate semialdehyde dehydrogenase [Triticum aestivum];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=1e-12) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.1 (e_value=1e-13) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977727-5981899 REVERSE LENGTH=607;; (*ITAG) Solyc01g106080.2.1 (e_value=8e-16) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00044063g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|224116290|ref|XP_002317261.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=2e-15) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=2e-16) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc05g010500.1.1 (e_value=8e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4714402-4715220 transcript_region:SL2.40ch05:4714402..4715220- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00046323g0001.1 protein AED:0.25 eAED:0.25 QI:259|1|0.5|1|0|0|2|0|399; (*GB) gi|225439765|ref|XP_002273310.1| (e_value=8e-136) PREDICTED: uncharacterized protein LOC100249946 [Vitis vinifera];; (*TAIR) AT5G02850.1 (e_value=1e-108) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:652159-653439 FORWARD LENGTH=426;; (*ITAG) Solyc04g014240.1.1 (e_value=2e-180) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4542851-4544056 transcript_region:SL2.40ch04:4542851..4544056+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050957g0006.1 protein AED:0.38 eAED:0.38 QI:133|0.5|0.4|1|1|1|5|0|381; (*GB) gi|225445196|ref|XP_002284247.1| (e_value=1e-63) PREDICTED: uncharacterized protein LOC100250827 [Vitis vinifera];; (*TAIR) AT4G28990.2 (e_value=4e-39) | Symbols: | RNA-binding protein-related | chr4:14291205-14293018 FORWARD LENGTH=395;; (*ITAG) Solyc05g018340.2.1 (e_value=8e-122) genomic_reference:SL2.40ch05 gene_region:20573843-20579911 transcript_region:SL2.40ch05:20573843..20579911+ go_terms:GO:0005622 functional_description:"cDNA clone 001-201-C05 full insert sequence (AHRD V1 **-- B7EY91_ORYSJ); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00038002g0008.1 protein AED:0.00 eAED:0.00 QI:117|1|1|1|1|1|2|142|132; (*GB) gi|388502126|gb|AFK39129.1| (e_value=2e-33) unknown [Lotus japonicus];; (*SWP) sp|Q39194|PSBW_ARATH (e_value=3e-33) Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2;; (*TAIR) AT2G30570.1 (e_value=2e-34) | Symbols: PSBW | photosystem II reaction center W | chr2:13019326-13020053 REVERSE LENGTH=133;; (*ITAG) Solyc06g084050.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:45606674-45608051 transcript_region:SL2.40ch06:45606674..45608051+ go_terms:GO:0009523 functional_description:"Photosystem II reaction center W protein (AHRD V1 ***- B6TMB3_MAIZE); contains Interpro domain(s) IPR009806 Photosystem II protein PsbW, class 2 "; GO:0009523 NbS00038002g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.91|0.84|1|0.83|0.69|13|164|693; (*GB) gi|225437221|ref|XP_002275262.1| (e_value=0.0) PREDICTED: F-box/LRR-repeat protein 17 [Vitis vinifera];; (*SWP) sp|Q8W104|FBL17_ARATH (e_value=2e-166) F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana GN=FBL17 PE=1 SV=1;; (*TAIR) AT3G54650.1 (e_value=1e-167) | Symbols: FBL17 | RNI-like superfamily protein | chr3:20226004-20228882 REVERSE LENGTH=593;; (*ITAG) Solyc06g084060.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45609438-45614435 transcript_region:SL2.40ch06:45609438..45614435+ go_terms:GO:0005515,GO:0004842 functional_description:"Leucine Rich Repeat family protein expressed (AHRD V1 ***- Q10GD4_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00038546g0005.1 protein AED:0.15 eAED:0.18 QI:0|0.5|0.44|0.77|0.75|0.88|9|0|633; (*GB) gi|359493041|ref|XP_002267014.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera];; (*SWP) sp|Q10251|IF2P_SCHPO (e_value=6e-126) Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC56F8.03 PE=1 SV=1;; (*TAIR) AT1G76810.1 (e_value=0.0) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294;; (*ITAG) Solyc06g054400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33670542-33677416 transcript_region:SL2.40ch06:33670542..33677416+ go_terms:GO:0005525 functional_description:"Translation initiation factor (AHRD V1 ***- Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0005525 NbS00007396g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|233; (*GB) gi|225428153|ref|XP_002278651.1| (e_value=5e-115) PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=1e-50) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=8e-52) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112100.2.1 (e_value=1e-135) genomic_reference:SL2.40ch01 gene_region:89962554-89964946 transcript_region:SL2.40ch01:89962554..89964946- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00007396g0006.1 protein AED:0.20 eAED:0.20 QI:153|1|1|1|0.5|0.33|3|0|290; (*GB) gi|255572694|ref|XP_002527280.1| (e_value=7e-137) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=3e-66) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=3e-67) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112140.2.1 (e_value=1e-148) genomic_reference:SL2.40ch01 gene_region:89987101-89989597 transcript_region:SL2.40ch01:89987101..89989597- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00002056g0011.1 protein AED:0.11 eAED:0.11 QI:100|0.66|1|1|0.66|0.75|4|230|212; (*GB) gi|255573125|ref|XP_002527492.1| (e_value=5e-75) Protein SYM1, putative [Ricinus communis];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=1e-20) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT4G33905.1 (e_value=3e-71) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:16254065-16255592 REVERSE LENGTH=261;; (*ITAG) Solyc11g012990.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5836650-5838075 transcript_region:SL2.40ch11:5836650..5838075+ go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B0WWR6_CULQU); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00002056g0010.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0.66|0.5|4|0|334; (*GB) gi|218192278|gb|EEC74705.1| (e_value=1e-61) hypothetical protein OsI_10421 [Oryza sativa Indica Group];; (*TAIR) AT4G33840.1 (e_value=4e-59) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g107000.1.1 (e_value=3e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86450406-86453610 transcript_region:SL2.40ch01:86450406..86453610- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbC24038656g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|6723681|emb|CAB67119.1| (e_value=2e-44) subtilisin-like protease [Solanum lycopersicum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=2e-24) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT3G14067.1 (e_value=2e-30) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc08g079980.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60526887-60529157 transcript_region:SL2.40ch08:60526887..60529157+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00033355g0005.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0.33|0.5|4|0|338; (*GB) gi|1237183|dbj|BAA07828.1| (e_value=0.0) 4-coumarate:coenzyme A ligase [Nicotiana tabacum];; (*SWP) sp|O24146|4CL2_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=2e-155) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc06g068650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38947648-38951634 transcript_region:SL2.40ch06:38947648..38951634- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00002778g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|62 NbS00059094g0004.1 protein AED:0.15 eAED:0.16 QI:46|0|0.5|1|0|0.5|2|264|29 NbS00059094g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|212; (*GB) gi|109289919|gb|AAP45172.2| (e_value=3e-76) hypothetical protein SBB1_14t00021 [Solanum bulbocastanum];; (*TAIR) AT3G13960.1 (e_value=2e-43) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc12g096070.1.1 (e_value=6e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63486942-63490380 transcript_region:SL2.40ch12:63486942..63490380+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 5 (AHRD V1 **-- Q6AWY4_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00013296g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.75|1|1|1|4|0|672; (*GB) gi|225460985|ref|XP_002280336.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=7e-14) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc07g064580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63884910-63888157 transcript_region:SL2.40ch07:63884910..63888157+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00013296g0012.1 protein AED:0.36 eAED:0.36 QI:358|0.87|0.77|1|0.87|0.77|9|5|208; (*GB) gi|242060618|ref|XP_002451598.1| (e_value=4e-135) hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor];; (*SWP) sp|Q567B1|OTU1_DANRE (e_value=1e-64) Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1;; (*TAIR) AT1G50670.1 (e_value=6e-130) | Symbols: | OTU-like cysteine protease family protein | chr1:18775086-18776552 REVERSE LENGTH=208;; (*ITAG) Solyc07g064590.2.1 (e_value=6e-132) genomic_reference:SL2.40ch07 gene_region:63891191-63895627 transcript_region:SL2.40ch07:63891191..63895627+ go_terms:GO:0004843 functional_description:"Ubiquitin thioesterase OTU1 (AHRD V1 **** B0XED2_CULQU); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0004843 NbS00013296g0013.1 protein AED:0.38 eAED:0.78 QI:38|0|0.5|1|0|0|2|119|18 NbS00013296g0004.1 protein AED:0.28 eAED:0.28 QI:0|1|0.6|1|1|1|5|0|270; (*GB) gi|255561959|ref|XP_002521988.1| (e_value=8e-150) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G28910.2 (e_value=5e-142) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:10930633-10932575 REVERSE LENGTH=535;; (*ITAG) Solyc06g036640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:23689659-23694752 transcript_region:SL2.40ch06:23689659..23694752- functional_description:"Coatomer (AHRD V1 ***- Q6K992_ORYSJ)"; NbS00013296g0014.1 protein AED:0.40 eAED:0.40 QI:0|0|0.33|1|0.5|0.66|3|299|62 NbS00013296g0214.1 protein AED:0.17 eAED:0.18 QI:0|0.71|0.62|1|0.57|0.62|8|933|472 NbS00013296g0219.1 protein AED:0.26 eAED:0.27 QI:176|0.6|0.5|1|0.4|0.66|6|299|302 NbS00013296g0218.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.5|0|1|2|0|86 NbS00013296g0220.1 protein AED:0.10 eAED:0.12 QI:0|0.85|0.76|0.95|0.95|0.90|21|0|1052 NbS00013296g0203.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|112 NbS00022043g0007.1 protein AED:0.24 eAED:0.24 QI:153|1|1|1|0.5|0.4|5|9|201; (*GB) gi|297738629|emb|CBI27874.3| (e_value=9e-90) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57040.1 (e_value=8e-85) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr5:23084035-23085116 REVERSE LENGTH=197;; (*ITAG) Solyc07g040950.2.1 (e_value=4e-100) genomic_reference:SL2.40ch07 gene_region:48524186-48525741 transcript_region:SL2.40ch07:48524186..48525741- go_terms:GO:0004493 functional_description:"Glyoxalase (AHRD V1 ***- C1E5I0_9CHLO); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004493 NbS00022043g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.55|1|0.5|0.66|9|0|707; (*GB) gi|297738630|emb|CBI27875.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=0.0) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G57035.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr5:23080743-23083819 FORWARD LENGTH=789;; (*ITAG) Solyc07g040940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48517549-48523205 transcript_region:SL2.40ch07:48517549..48523205+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00022043g0011.1 protein AED:0.29 eAED:0.79 QI:0|0.4|0|1|0|0.33|6|0|280 NbS00059583g0004.1 protein AED:0.38 eAED:0.42 QI:128|0.58|0.38|0.92|0.75|0.84|13|0|576; (*GB) gi|76782190|gb|ABA54865.1| (e_value=0.0) putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica];; (*SWP) sp|Q00218|AROG_ARATH (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2;; (*TAIR) AT4G33510.1 (e_value=0.0) | Symbols: DHS2 | 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase | chr4:16116496-16118549 FORWARD LENGTH=507;; (*ITAG) Solyc11g009080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3200299-3203598 transcript_region:SL2.40ch11:3200299..3203598+ go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 1 (AHRD V1 ***- B6TUB8_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0009073 NbS00037925g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|1|1|3|130|286; (*GB) gi|225457423|ref|XP_002284926.1| (e_value=2e-85) PREDICTED: myb-related protein 306 [Vitis vinifera];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=7e-79) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT3G47600.1 (e_value=4e-75) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333;; (*ITAG) Solyc02g087960.2.1 (e_value=4e-142) genomic_reference:SL2.40ch02 gene_region:44775431-44776995 transcript_region:SL2.40ch02:44775431..44776995+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9SN78_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbC25642857g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|100 NbS00037684g0005.1 protein AED:0.06 eAED:0.06 QI:0|-1|1|1|-1|1|1|0|154; (*GB) gi|225426596|ref|XP_002280209.1| (e_value=1e-79) PREDICTED: uncharacterized protein LOC100242761 [Vitis vinifera];; (*TAIR) AT4G24130.1 (e_value=3e-71) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc08g083090.1.1 (e_value=3e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62825827-62826291 transcript_region:SL2.40ch08:62825827..62826291+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00037684g0007.1 protein AED:0.25 eAED:0.40 QI:0|0|0|1|0.5|0.33|3|0|167; (*GB) gi|356543096|ref|XP_003539999.1| (e_value=9e-61) PREDICTED: embryogenesis-associated protein EMB8-like [Glycine max];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=3e-37) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT3G50790.1 (e_value=1e-57) | Symbols: | esterase/lipase/thioesterase family protein | chr3:18880074-18881940 REVERSE LENGTH=408;; (*ITAG) Solyc08g083140.2.1 (e_value=2e-81) genomic_reference:SL2.40ch08 gene_region:62847856-62854865 transcript_region:SL2.40ch08:62847856..62854865+ go_terms:GO:0042802 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA); contains Interpro domain(s) IPR012020 AB-hydrolase YheT, putative "; GO:0042802 NbS00040481g0015.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.22|0.88|0.62|0.77|9|234|1348; (*GB) gi|255575596|ref|XP_002528698.1| (e_value=0.0) phospholipid-transporting atpase, putative [Ricinus communis];; (*SWP) sp|P98204|ALA1_ARATH (e_value=0.0) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=0.0) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc10g074940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57978321-57986678 transcript_region:SL2.40ch10:57978321..57986678+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00040481g0018.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.75|0.33|0|4|0|282; (*ITAG) Solyc01g073870.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00040481g0012.1 protein AED:0.30 eAED:0.33 QI:0|0|0|0.5|1|1|4|0|173; (*GB) gi|388507462|gb|AFK41797.1| (e_value=5e-30) unknown [Medicago truncatula];; (*TAIR) AT5G01910.2 (e_value=1e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:358077-358655 REVERSE LENGTH=164;; (*ITAG) Solyc06g082850.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:44798276-44799732 transcript_region:SL2.40ch06:44798276..44799732+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031306g0016.1 protein AED:0.09 eAED:0.09 QI:475|1|1|1|0.87|0.88|9|623|1101; (*GB) gi|255572207|ref|XP_002527043.1| (e_value=0.0) Ran GTPase binding protein, putative [Ricinus communis];; (*SWP) sp|Q4U2R1|HERC2_MOUSE (e_value=8e-53) E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc11g065120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47535935-47556450 transcript_region:SL2.40ch11:47535935..47556450+ go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbS00031306g0010.1 protein AED:0.19 eAED:0.19 QI:300|0.83|0.85|1|0.66|0.42|7|254|510; (*GB) gi|359479221|ref|XP_002279963.2| (e_value=3e-100) PREDICTED: uncharacterized protein LOC100265339 [Vitis vinifera];; (*TAIR) AT4G03250.1 (e_value=1e-68) | Symbols: | Homeodomain-like superfamily protein | chr4:1425050-1427744 FORWARD LENGTH=507;; (*ITAG) Solyc12g099760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65114498-65119396 transcript_region:SL2.40ch12:65114498..65119396- go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *-*- D6BV21_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00031306g0008.1 protein AED:0.09 eAED:0.09 QI:224|0.8|0.83|1|0.6|0.66|6|355|366; (*GB) gi|255554575|ref|XP_002518326.1| (e_value=0.0) lipoic acid synthetase, putative [Ricinus communis];; (*SWP) sp|B9RX57|LISC_RICCO (e_value=0.0) Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1;; (*TAIR) AT5G08415.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr5:2710983-2713101 REVERSE LENGTH=394;; (*ITAG) Solyc12g099700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65074820-65081438 transcript_region:SL2.40ch12:65074820..65081438+ go_terms:GO:0008152,GO:0009107,GO:0051536 functional_description:"Lipoyl synthase (AHRD V1 *-*- B4UC29_ANASK); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0008152,GO:0009107,GO:0051536 NbS00031306g0014.1 protein AED:0.20 eAED:0.21 QI:0|1|0|1|1|1|2|0|329; (*GB) gi|225434845|ref|XP_002280577.1| (e_value=9e-96) PREDICTED: uncharacterized protein LOC100244977 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=9e-79) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc12g099730.1.1 (e_value=2e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65090461-65092836 transcript_region:SL2.40ch12:65090461..65092836- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00052552g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|4|0|1184; (*GB) gi|148923083|gb|ABR18799.1| (e_value=0.0) brassinosteroid insensitive 1 [Nicotiana tabacum];; (*SWP) sp|Q8L899|BRI1_SOLPE (e_value=0.0) Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1;; (*TAIR) AT4G39400.1 (e_value=0.0) | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine-rich receptor-like protein kinase family protein | chr4:18324826-18328416 FORWARD LENGTH=1196;; (*ITAG) Solyc04g051510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49870634-49874257 transcript_region:SL2.40ch04:49870634..49874257+ go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbS00054008g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|63; (*GB) gi|5070140|gb|AAD39035.1|AF068724_1 (e_value=3e-16) MADS-box protein MADS5 [Nicotiana tabacum]; NbS00054008g0001.1 protein AED:0.17 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|200; (*ITAG) Solyc05g012010.2.1 (e_value=3e-22) genomic_reference:SL2.40ch05 gene_region:5212785-5215956 transcript_region:SL2.40ch05:5212785..5215956+ go_terms:GO:0008270 functional_description:"RING-H2 finger protein (Fragment) (AHRD V1 *-*- Q7X9M1_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00029564g0004.1 protein AED:0.15 eAED:0.15 QI:113|0.72|0.69|0.91|0.5|0.52|23|0|638; (*GB) gi|296083596|emb|CBI23585.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A2XQX0|ARP9_ORYSI (e_value=0.0) Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=2 SV=2;; (*TAIR) AT5G43500.2 (e_value=0.0) | Symbols: ATARP9, ARP9 | actin-related protein 9 | chr5:17469991-17473429 FORWARD LENGTH=584;; (*ITAG) Solyc09g089660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64770679-64782089 transcript_region:SL2.40ch09:64770679..64782089- go_terms:GO:0005515 functional_description:"Actin-related protein 8 (AHRD V1 ***- B5X2S3_SALSA); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbS00029564g0003.1 protein AED:0.28 eAED:0.32 QI:0|0|0|1|1|1|2|0|121; (*ITAG) Solyc09g089650.1.1 (e_value=8e-44) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:64763736-64764086 transcript_region:SL2.40ch09:64763736..64764086- functional_description:"At1g04330 (Fragment) (AHRD V1 ***- B0FVZ1_ARATH)"; NbS00036365g0004.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|3|0|400; (*GB) gi|350537991|ref|NP_001234833.1| (e_value=6e-141) allene oxide synthase [Solanum lycopersicum];; (*SWP) sp|Q96242|CP74A_ARATH (e_value=7e-106) Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3;; (*TAIR) AT5G42650.1 (e_value=6e-107) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc04g079730.1.1 (e_value=2e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61687174-61688778 transcript_region:SL2.40ch04:61687174..61688778- go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00037486g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.4|0.8|0.5|0.8|5|0|416; (*GB) gi|359487780|ref|XP_003633650.1| (e_value=5e-121) PREDICTED: uncharacterized protein LOC100852866 [Vitis vinifera];; (*SWP) sp|O60291|MGRN1_HUMAN (e_value=1e-33) E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2;; (*TAIR) AT3G06140.1 (e_value=2e-98) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g098750.2.1 (e_value=7e-171) genomic_reference:SL2.40ch01 gene_region:80943685-80949819 transcript_region:SL2.40ch01:80943685..80949819+ go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00037486g0011.1 protein AED:0.20 eAED:0.23 QI:0|0.83|0.71|1|0.66|0.71|7|195|465; (*GB) gi|225451019|ref|XP_002281041.1| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase ALE2 [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=2e-87) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT1G54820.1 (e_value=3e-153) | Symbols: | Protein kinase superfamily protein | chr1:20447370-20450761 FORWARD LENGTH=458;; (*ITAG) Solyc01g098740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80937377-80940546 transcript_region:SL2.40ch01:80937377..80940546- go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00049826g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.4|1|0.75|0.8|5|0|177; (*GB) gi|225434243|ref|XP_002280371.1| (e_value=1e-84) PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q8VYA1|PARG2_ARATH (e_value=7e-67) Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1;; (*TAIR) AT2G31865.1 (e_value=5e-68) | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase 2 | chr2:13546790-13549472 REVERSE LENGTH=522;; (*ITAG) Solyc12g017920.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7785524-7801666 transcript_region:SL2.40ch12:7785524..7801666- go_terms:GO:0004649 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-** Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0004649 NbS00049826g0004.1 protein AED:0.40 eAED:0.51 QI:0|0|0|1|0|0|4|0|142; (*GB) gi|225434243|ref|XP_002280371.1| (e_value=4e-30) PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=4e-26) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.2 (e_value=3e-27) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547;; (*ITAG) Solyc12g096610.1.1 (e_value=1e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63789621-63793477 transcript_region:SL2.40ch12:63789621..63793477+ go_terms:GO:0005975 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 ***- Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0005975 NbS00049826g0006.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0|0|2|0|74 NbS00004197g0020.1 protein AED:0.27 eAED:0.27 QI:165|0.66|0.57|1|0.5|0.57|7|0|311; (*GB) gi|225428987|ref|XP_002265287.1| (e_value=2e-161) PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis vinifera];; (*SWP) sp|A1WXZ3|RLMN_HALHL (e_value=2e-64) Ribosomal RNA large subunit methyltransferase N OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1;; (*TAIR) AT3G19630.1 (e_value=2e-158) | Symbols: | Radical SAM superfamily protein | chr3:6818676-6820674 REVERSE LENGTH=372;; (*ITAG) Solyc01g107040.2.1 (e_value=1e-179) genomic_reference:SL2.40ch01 gene_region:86468483-86473122 transcript_region:SL2.40ch01:86468483..86473122- go_terms:GO:0051536,GO:0005737 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- D6TN06_9CHLR); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "; GO:0051536,GO:0005737 NbS00004197g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|23429644|gb|AAN10199.1| (e_value=2e-44) endoxylanase [Carica papaya];; (*TAIR) AT4G33840.1 (e_value=2e-38) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g107000.1.1 (e_value=3e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86450406-86453610 transcript_region:SL2.40ch01:86450406..86453610- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00004197g0023.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.25|0.33|0.75|4|0|235; (*GB) gi|225428999|ref|XP_002264605.1| (e_value=5e-50) PREDICTED: endo-1,4-beta-xylanase A-like [Vitis vinifera];; (*TAIR) AT4G33830.1 (e_value=4e-41) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16220324-16222676 REVERSE LENGTH=576;; (*ITAG) Solyc01g107000.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86450406-86453610 transcript_region:SL2.40ch01:86450406..86453610- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00004197g0026.1 protein AED:0.06 eAED:0.06 QI:816|1|0.92|1|0.46|0.57|14|225|416; (*GB) gi|296083048|emb|CBI22452.3| (e_value=6e-135) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9QUG2|POLK_MOUSE (e_value=4e-39) DNA polymerase kappa OS=Mus musculus GN=Polk PE=1 SV=1;; (*TAIR) AT1G49980.1 (e_value=6e-110) | Symbols: | DNA/RNA polymerases superfamily protein | chr1:18508026-18512111 FORWARD LENGTH=671;; (*ITAG) Solyc01g107010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86456783-86462375 transcript_region:SL2.40ch01:86456783..86462375+ go_terms:GO:0005515,GO:0003887 functional_description:"DNA polymerase IV (AHRD V1 *-** D6RLC7_COPC7); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0005515,GO:0003887 NbS00004197g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|160; (*GB) gi|224105727|ref|XP_002313913.1| (e_value=3e-91) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g107020.2.1 (e_value=6e-109) genomic_reference:SL2.40ch01 gene_region:86462814-86464069 transcript_region:SL2.40ch01:86462814..86464069+ functional_description:"Predicted DNA damage inducible protein (ISS) (AHRD V1 **-- Q00VZ6_OSTTA)"; NbS00004197g0024.1 protein AED:0.35 eAED:0.35 QI:0|1|0.25|1|1|1|4|0|379; (*GB) gi|225428989|ref|XP_002265317.1| (e_value=3e-72) PREDICTED: uncharacterized protein LOC100263484 [Vitis vinifera];; (*TAIR) AT3G19650.1 (e_value=6e-36) | Symbols: | cyclin-related | chr3:6823543-6825174 FORWARD LENGTH=302;; (*ITAG) Solyc01g107030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86465054-86468000 transcript_region:SL2.40ch01:86465054..86468000+ functional_description:"Somatic embryogenesis related protein (AHRD V1 ***- B6TIS5_MAIZE)"; NbS00008008g0015.1 protein AED:0.03 eAED:0.03 QI:130|1|1|1|0.75|0.6|5|563|617; (*GB) gi|224131658|ref|XP_002321145.1| (e_value=4e-114) ebs-bah-phd domain-containing protein [Populus trichocarpa];; (*TAIR) AT4G22140.2 (e_value=3e-105) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc05g042030.2.1 (e_value=1e-115) genomic_reference:SL2.40ch05 gene_region:53639308-53647040 transcript_region:SL2.40ch05:53639308..53647040+ go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00008008g0009.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|255557369|ref|XP_002519715.1| (e_value=9e-27) mads box protein, putative [Ricinus communis];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=1e-20) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=1e-21) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc04g056740.1.1 (e_value=2e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00008008g0013.1 protein AED:0.10 eAED:0.10 QI:91|0.33|0.57|0.71|0.5|0.57|7|312|533; (*GB) gi|255582872|ref|XP_002532208.1| (e_value=1e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25330.1 (e_value=5e-26) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12957834-12958683 FORWARD LENGTH=229;; (*ITAG) Solyc12g006060.1.1 (e_value=2e-158) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:648797-656982 transcript_region:SL2.40ch12:648797..656982+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008008g0014.1 protein AED:0.18 eAED:0.18 QI:378|1|0.8|1|0.75|0.8|5|0|590; (*GB) gi|225447121|ref|XP_002274227.1| (e_value=0.0) PREDICTED: nitrate transporter 1.3-like [Vitis vinifera];; (*SWP) sp|Q9LVE0|PTR33_ARATH (e_value=0.0) Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1;; (*TAIR) AT3G21670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:7626942-7628954 REVERSE LENGTH=590;; (*ITAG) Solyc12g006050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:645791-648040 transcript_region:SL2.40ch12:645791..648040+ go_terms:GO:0016020 functional_description:"Nitrate transporter (AHRD V1 ***- Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00033173g0010.1 protein AED:0.12 eAED:0.12 QI:384|0.63|0.58|1|1|1|12|400|762; (*GB) gi|225423497|ref|XP_002274401.1| (e_value=0.0) PREDICTED: probable inactive purple acid phosphatase 2 [Vitis vinifera];; (*SWP) sp|Q9LMG7|PPA2_ARATH (e_value=3e-172) Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana GN=PAP2 PE=2 SV=1;; (*TAIR) AT1G13900.1 (e_value=2e-173) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4753494-4755554 REVERSE LENGTH=656;; (*ITAG) Solyc04g005450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:310785-314269 transcript_region:SL2.40ch04:310785..314269- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 *-** B0WRM8_CULQU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00033173g0017.1 protein AED:0.21 eAED:0.21 QI:316|1|1|1|0.9|1|11|442|393; (*GB) gi|297739543|emb|CBI29725.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C1A4M2|HIS1_GEMAT (e_value=7e-37) ATP phosphoribosyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=hisG PE=3 SV=1;; (*TAIR) AT1G09795.1 (e_value=0.0) | Symbols: ATATP-PRT2, HISN1B, ATP-PRT2 | ATP phosphoribosyl transferase 2 | chr1:3173588-3176690 FORWARD LENGTH=413;; (*ITAG) Solyc01g103750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84038786-84043729 transcript_region:SL2.40ch01:84038786..84043729- go_terms:GO:0003879 functional_description:"ATP phosphoribosyltransferase (AHRD V1 **** O46887_THLGO); contains Interpro domain(s) IPR001348 Histidine biosynthesis HisG: ATP phosphoribosyltransferase "; GO:0003879 NbS00033173g0012.1 protein AED:0.34 eAED:0.35 QI:278|0.92|0.86|1|0.85|0.8|15|0|548; (*GB) gi|359495935|ref|XP_003635118.1| (e_value=0.0) PREDICTED: ribosome biogenesis protein BOP1 homolog [Vitis vinifera];; (*SWP) sp|A8ID74|BOP1_CHLRE (e_value=3e-120) Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2;; (*TAIR) AT2G40360.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:16853123-16856635 REVERSE LENGTH=753;; (*ITAG) Solyc01g103740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84033386-84038118 transcript_region:SL2.40ch01:84033386..84038118- go_terms:GO:0005634 functional_description:"Ribosome biogenesis protein ERB1 (AHRD V1 ***- ERB1_CRYNE); contains Interpro domain(s) IPR012953 BOP1, N-terminal "; GO:0005634 NbS00033173g0016.1 protein AED:0.45 eAED:0.61 QI:0|0.33|0|1|0.33|0.75|4|0|192; (*GB) gi|356560725|ref|XP_003548639.1| (e_value=1e-83) PREDICTED: ribosome biogenesis protein BOP1 homolog [Glycine max];; (*SWP) sp|A8ID74|BOP1_CHLRE (e_value=2e-47) Ribosome biogenesis protein BOP1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_111274 PE=3 SV=2;; (*TAIR) AT2G40360.1 (e_value=2e-75) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:16853123-16856635 REVERSE LENGTH=753;; (*ITAG) Solyc01g103720.2.1 (e_value=6e-59) genomic_reference:SL2.40ch01 gene_region:84030477-84033371 transcript_region:SL2.40ch01:84030477..84033371- functional_description:"Ribosome biogenesis protein ERB1 (AHRD V1 ***- ERB1_CRYNE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00011634g0001.1 protein AED:0.16 eAED:0.71 QI:9|1|0.25|1|1|1|4|0|316; (*GB) gi|359492219|ref|XP_002280236.2| (e_value=1e-57) PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=2e-35) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=1e-36) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc12g089280.1.1 (e_value=5e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00027815g0005.1 protein AED:0.21 eAED:0.25 QI:220|0.66|0.71|1|0.33|0.14|7|334|500; (*GB) gi|225439898|ref|XP_002279479.1| (e_value=5e-113) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=2e-54) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=2e-79) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc10g086060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64348811-64350952 transcript_region:SL2.40ch10:64348811..64350952- functional_description:"IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00025339g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|106 NbS00025339g0006.1 protein AED:0.25 eAED:0.31 QI:0|0.5|0.33|1|0|0.33|3|174|98; (*GB) gi|388504756|gb|AFK40444.1| (e_value=4e-24) unknown [Lotus japonicus];; (*TAIR) AT4G38495.1 (e_value=7e-16) | Symbols: | CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:18007466-18008025 REVERSE LENGTH=124;; (*ITAG) Solyc06g007480.2.1 (e_value=7e-33) genomic_reference:SL2.40ch06 gene_region:1485693-1489824 transcript_region:SL2.40ch06:1485693..1489824+ functional_description:"INO80 complex subunit (AHRD V1 *-*- A6ZQQ6_YEAS7); contains Interpro domain(s) IPR013272 YL1 nuclear, C-terminal "; NbS00023133g0001.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.2|1|1|5|0|143 NbS00023133g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|130; (*GB) gi|53749448|gb|AAU90304.1| (e_value=1e-33) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc10g044500.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00014098g0013.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|0.66|0.25|4|0|283; (*GB) gi|225431003|ref|XP_002279191.1| (e_value=1e-124) PREDICTED: putative auxin efflux carrier component 8 [Vitis vinifera];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=3e-116) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=2e-117) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=3e-70) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00014098g0012.1 protein AED:0.34 eAED:0.34 QI:0|0|0.25|1|0.66|0.75|4|0|540; (*GB) gi|3335341|gb|AAC27143.1|AAC27143 (e_value=3e-158) T8F5.10 [Arabidopsis thaliana];; (*SWP) sp|Q8GZA4|CBSX6_ARATH (e_value=7e-108) CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1;; (*TAIR) AT1G65320.1 (e_value=5e-109) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr1:24260168-24262644 REVERSE LENGTH=425;; (*ITAG) Solyc04g056630.2.1 (e_value=3e-171) genomic_reference:SL2.40ch04 gene_region:53756008-53762359 transcript_region:SL2.40ch04:53756008..53762359- functional_description:"CBS domain containing protein-like (AHRD V1 ***- Q5JJJ9_ORYSJ); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00006326g0013.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0.25|4|0|263; (*ITAG) Solyc09g072940.1.1 (e_value=1e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61114615-61117469 transcript_region:SL2.40ch09:61114615..61117469- functional_description:"Nbs-lrr resistance protein (Fragment) (AHRD V1 *--- B9P8M1_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006326g0008.1 protein AED:0.18 eAED:0.19 QI:0|0.83|0.85|1|0.5|0.42|7|0|240; (*GB) gi|1568513|emb|CAA57445.1| (e_value=2e-141) fbp11 [Petunia x hybrida];; (*SWP) sp|Q38836|AGL11_ARATH (e_value=5e-94) Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1;; (*TAIR) AT4G09960.1 (e_value=4e-95) | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236713-6239409 REVERSE LENGTH=230;; (*ITAG) Solyc11g028020.1.1 (e_value=1e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16517636-16525760 transcript_region:SL2.40ch11:16517636..16525760- go_terms:GO:0005634 functional_description:"Agamous MADS-box transcription factor (AHRD V1 ***- B2CDE2_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00006326g0009.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|4097585|gb|AAD09518.1| (e_value=3e-91) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|P54120|AIG1_ARATH (e_value=3e-41) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=2e-57) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc06g064850.1.1 (e_value=5e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36816818-36819832 transcript_region:SL2.40ch06:36816818..36819832- go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- B9ENC9_SALSA); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00006326g0010.1 protein AED:0.52 eAED:0.52 QI:0|0|0|1|0|0|4|0|130; (*GB) gi|4097585|gb|AAD09518.1| (e_value=6e-41) NTGP4, partial [Nicotiana tabacum];; (*TAIR) AT1G33970.5 (e_value=1e-13) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc11g028010.1.1 (e_value=2e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00037754g0002.1 protein AED:0.02 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|250; (*ITAG) Solyc07g053560.2.1 (e_value=9e-56) genomic_reference:SL2.40ch07 gene_region:59299113-59304603 transcript_region:SL2.40ch07:59299113..59304603- functional_description:"Genomic DNA chromosome 5 P1 clone MLN1 (AHRD V1 *-*- Q9FFH4_ARATH)"; NbS00037754g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|100; (*GB) gi|388494504|gb|AFK35318.1| (e_value=3e-16) unknown [Lotus japonicus];; (*SWP) sp|Q9SGP6|GRXC9_ARATH (e_value=1e-16) Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1;; (*TAIR) AT1G28480.1 (e_value=7e-18) | Symbols: GRX480, roxy19 | Thioredoxin superfamily protein | chr1:10013634-10014047 REVERSE LENGTH=137;; (*ITAG) Solyc07g053550.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59297758-59298204 transcript_region:SL2.40ch07:59297758..59298204+ go_terms:GO:0005515 functional_description:"Glutaredoxin (AHRD V1 ***- B9HGW6_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0005515 NbS00008859g0011.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|2|120|388; (*GB) gi|147799468|emb|CAN70606.1| (e_value=0.0) hypothetical protein VITISV_040196 [Vitis vinifera];; (*TAIR) AT5G11730.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc08g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51408881-51413600 transcript_region:SL2.40ch08:51408881..51413600- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00008859g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|67 NbS00008859g0001.1 protein AED:0.16 eAED:0.16 QI:637|0.6|0.5|1|1|1|6|0|577; (*GB) gi|296081604|emb|CBI20609.3| (e_value=9e-166) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82804|ELF3_ARATH (e_value=8e-79) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=6e-80) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc08g065870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51419908-51425076 transcript_region:SL2.40ch08:51419908..51425076+ go_terms:GO:0003700,GO:0008022 functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; GO:0003700,GO:0008022 NbS00016121g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.6|1|0.75|0.8|5|0|459; (*GB) gi|255585738|ref|XP_002533550.1| (e_value=2e-165) acetylglucosaminyltransferase, putative [Ricinus communis];; (*TAIR) AT4G27480.2 (e_value=6e-156) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc10g007040.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1431324-1434091 transcript_region:SL2.40ch10:1431324..1434091- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00016121g0012.1 protein AED:0.19 eAED:0.19 QI:196|1|1|1|1|1|12|87|530; (*GB) gi|378405187|sp|E0CSI1.2|MTBC1_VITVI (e_value=0.0) RecName: Full=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1; Includes: RecName: Full=Methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase; Includes: RecName: Full=Enolase-phosphatase E1; AltName: Full=2,3-diketo-5-methylthio-1-phosphopentane phosphatase;; (*SWP) sp|E0CSI1|MTBC1_VITVI (e_value=0.0) Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 OS=Vitis vinifera GN=VIT_19s0014g02480 PE=2 SV=2;; (*TAIR) AT5G53850.2 (e_value=0.0) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr5:21861155-21864817 REVERSE LENGTH=507;; (*ITAG) Solyc07g063040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62856775-62862494 transcript_region:SL2.40ch07:62856775..62862494+ go_terms:GO:0046872,GO:0008152,GO:0005737,GO:0019509 functional_description:"Enolase-phosphatase E-1 (AHRD V1 *-*- A8UQN2_9AQUI); contains Interpro domain(s) IPR017714 Methylthioribulose-1-phosphate dehydratase "; GO:0046872,GO:0008152,GO:0005737,GO:0019509 NbS00016121g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.57|0.5|0.87|0.71|0.75|8|0|603; (*GB) gi|292806707|gb|ADE42483.1| (e_value=0.0) proton pump interactor 1 [Solanum tuberosum];; (*TAIR) AT4G27500.1 (e_value=1e-120) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc07g063100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62894231-62898079 transcript_region:SL2.40ch07:62894231..62898079- functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00024168g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|159; (*ITAG) Solyc01g017760.1.1 (e_value=2e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024168g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|0.5|0.33|3|0|439; (*GB) gi|357438065|ref|XP_003589308.1| (e_value=2e-37) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-25) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-26) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc03g061650.1.1 (e_value=3e-109) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:28919799-28922209 transcript_region:SL2.40ch03:28919799..28922209- functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 *-*- FBL47_ARATH); contains Interpro domain(s) IPR006566 FBD-like "; NbS00024168g0011.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|372; (*GB) gi|357438065|ref|XP_003589308.1| (e_value=2e-28) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=6e-21) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=4e-22) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g015000.1.1 (e_value=4e-130) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:9285667-9287496 transcript_region:SL2.40ch05:9285667..9287496+ functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 ***- FBL47_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019865g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|255541204|ref|XP_002511666.1| (e_value=1e-47) 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis];; (*SWP) sp|Q8RW93|LBP65_ARATH (e_value=6e-39) Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1;; (*TAIR) AT4G00165.2 (e_value=5e-40) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:69433-69819 REVERSE LENGTH=128;; (*ITAG) Solyc01g090970.2.1 (e_value=3e-67) genomic_reference:SL2.40ch01 gene_region:76437205-76438150 transcript_region:SL2.40ch01:76437205..76438150- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6UGA2_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00019865g0007.1 protein AED:0.41 eAED:0.41 QI:292|0.87|0.77|1|0.75|0.66|9|0|274; (*GB) gi|255541208|ref|XP_002511668.1| (e_value=6e-107) vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|Q84WW5|VAP13_ARATH (e_value=1e-96) Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1;; (*TAIR) AT4G00170.1 (e_value=8e-98) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr4:70732-72085 REVERSE LENGTH=239;; (*ITAG) Solyc01g090990.2.1 (e_value=9e-135) genomic_reference:SL2.40ch01 gene_region:76442172-76448800 transcript_region:SL2.40ch01:76442172..76448800- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005198 NbS00043192g0005.1 protein AED:0.17 eAED:0.33 QI:0|0|0|1|0|0.33|3|0|331; (*ITAG) Solyc08g081650.1.1 (e_value=5e-146) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:61803221-61805947 transcript_region:SL2.40ch08:61803221..61805947- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00043192g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|532; (*GB) gi|357511423|ref|XP_003626000.1| (e_value=0.0) Pentatricopeptide repeat protein [Medicago truncatula];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=1e-110) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=1e-111) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g009500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3492431-3494020 transcript_region:SL2.40ch06:3492431..3494020+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00020699g0008.1 protein AED:0.16 eAED:0.16 QI:106|0.6|0.33|1|0.8|0.66|6|0|935; (*GB) gi|30013669|gb|AAP03877.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum];; (*SWP) sp|Q9C5V5|GLR28_ARATH (e_value=0.0) Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2;; (*TAIR) AT2G29110.1 (e_value=0.0) | Symbols: ATGLR2.8, GLR2.8 | glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947;; (*ITAG) Solyc06g063200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00023765g0004.1 protein AED:0.06 eAED:0.06 QI:71|0.75|1|1|0.75|0.8|5|311|172; (*GB) gi|255571699|ref|XP_002526793.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g054840.2.1 (e_value=7e-86) genomic_reference:SL2.40ch05 gene_region:63793861-63796929 transcript_region:SL2.40ch05:63793861..63796929+ functional_description:"Chromosome 21 open reading frame 59 (Predicted) (AHRD V1 **-- A9CAY9_PAPAN)"; NbS00023765g0005.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|373; (*GB) gi|255571701|ref|XP_002526794.1| (e_value=5e-82) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80624|MAKR4_ARATH (e_value=4e-45) Probable membrane-associated kinase regulator 4 OS=Arabidopsis thaliana GN=MAKR4 PE=2 SV=1;; (*TAIR) AT2G39370.1 (e_value=3e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits to 178 proteins in 53 species: Archae - 0; Bacteria - 58; Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:16444280-16445266 REVERSE LENGTH=328;; (*ITAG) Solyc05g054850.1.1 (e_value=2e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63801469-63802563 transcript_region:SL2.40ch05:63801469..63802563- functional_description:"Unknown Protein (AHRD V1)"; NbS00035342g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|224129534|ref|XP_002328740.1| (e_value=2e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=4e-28) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G02400.1 (e_value=2e-78) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:631413-632449 REVERSE LENGTH=318;; (*ITAG) Solyc01g102730.2.1 (e_value=8e-107) genomic_reference:SL2.40ch01 gene_region:83218112-83223218 transcript_region:SL2.40ch01:83218112..83223218- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl-CoA reductase family (AHRD V1 ***- D7LQ28_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00021145g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|651; (*GB) gi|297742976|emb|CBI35843.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3E991|Y5269_ARATH (e_value=2e-157) Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4;; (*TAIR) AT3G42880.1 (e_value=4e-172) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633;; (*ITAG) Solyc03g122230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64176196-64178821 transcript_region:SL2.40ch03:64176196..64178821+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00044349g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|350538151|ref|NP_001234841.1| (e_value=5e-42) ethylene-responsive factor 1 [Solanum lycopersicum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=3e-40) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=3e-41) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc05g051180.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60577494-60578126 transcript_region:SL2.40ch05:60577494..60578126+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017786g0017.1 protein AED:0.21 eAED:0.23 QI:0|0.44|0.3|1|0.44|0.5|10|0|1165; (*GB) gi|296088276|emb|CBI36502.3| (e_value=2e-130) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23900.2 (e_value=2e-97) | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:8632717-8635852 REVERSE LENGTH=934;; (*ITAG) Solyc09g092250.2.1 (e_value=2e-153) genomic_reference:SL2.40ch09 gene_region:66735783-66742804 transcript_region:SL2.40ch09:66735783..66742804+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *--- Q9LIR7_ARATH); contains Interpro domain(s) IPR001298 Filamin/ABP280 repeat "; GO:0003676,GO:0008270,GO:0000166 NbS00017786g0001.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|1|1|2|144|119 NbS00017786g0024.1 protein AED:0.09 eAED:0.16 QI:0|0|0|0.75|0|0|4|0|179; (*ITAG) Solyc03g093100.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00017786g0018.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|175 NbS00007440g0019.1 protein AED:0.32 eAED:0.40 QI:226|0|0.4|1|0|0.2|5|0|237; (*GB) gi|255558348|ref|XP_002520201.1| (e_value=1e-43) two-component sensor protein histidine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9ZWS9|ARR3_ARATH (e_value=2e-35) Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1;; (*TAIR) AT1G59940.1 (e_value=2e-36) | Symbols: ARR3 | response regulator 3 | chr1:22065894-22066895 REVERSE LENGTH=231;; (*ITAG) Solyc05g006420.2.1 (e_value=1e-53) genomic_reference:SL2.40ch05 gene_region:1055803-1059192 transcript_region:SL2.40ch05:1055803..1059192+ go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 *-** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00007440g0016.1 protein AED:0.08 eAED:0.08 QI:208|1|1|1|0.71|0.87|8|453|388; (*GB) gi|76160956|gb|ABA40441.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P52903|ODPA_SOLTU (e_value=0.0) Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G59900.1 (e_value=0.0) | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389;; (*ITAG) Solyc05g006520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1134244-1140938 transcript_region:SL2.40ch05:1134244..1140938- go_terms:GO:0050897,GO:0008270 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- B6TMS5_MAIZE); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0050897,GO:0008270 NbS00007440g0018.1 protein AED:0.31 eAED:0.31 QI:0|1|0.83|1|1|1|6|0|255; (*GB) gi|350537893|ref|NP_001233804.1| (e_value=0.0) protein phosphatase 2A catalytic subunit [Solanum lycopersicum];; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1;; (*TAIR) AT1G10430.1 (e_value=0.0) | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00007440g0017.1 protein AED:0.36 eAED:0.37 QI:0|0.42|0.5|1|0.57|0.62|8|411|285; (*GB) gi|255558330|ref|XP_002520192.1| (e_value=3e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G59840.2 (e_value=1e-105) | Symbols: CCB4 | cofactor assembly of complex C | chr1:22026569-22028174 FORWARD LENGTH=297;; (*ITAG) Solyc04g005090.2.1 (e_value=5e-135) genomic_reference:SL2.40ch04 gene_region:73003-77723 transcript_region:SL2.40ch04:73003..77723- functional_description:"Uncharacterized conserved membrane protein (AHRD V1 **-- A5GTC4_SYNR3)"; NbS00011852g0001.1 protein AED:0.27 eAED:0.42 QI:0|0|0|1|1|1|2|0|141; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=4e-32) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=3e-17) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G67080.1 (e_value=2e-32) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc02g090980.1.1 (e_value=6e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47010791-47011858 transcript_region:SL2.40ch02:47010791..47011858+ go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00011852g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|4106857|gb|AAD03046.1| (e_value=1e-29) cytochrome c biogenesis protein [Solanum tuberosum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=3e-27) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=2e-30) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00028221g0015.1 protein AED:0.05 eAED:0.05 QI:469|1|1|1|0.91|0.84|13|477|750; (*GB) gi|296086714|emb|CBI32349.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q03516|RSN1_YEAST (e_value=2e-28) Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1;; (*TAIR) AT4G02900.1 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785;; (*ITAG) Solyc06g084330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45777999-45781628 transcript_region:SL2.40ch06:45777999..45781628+ go_terms:GO:0016020 functional_description:"Hv711N16.16 (Fragment) (AHRD V1 *--- Q8LLC2_HORVU); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00028221g0013.1 protein AED:0.08 eAED:0.08 QI:91|0.71|0.87|1|0.85|0.87|8|587|373; (*GB) gi|15227228|ref|NP_182332.1| (e_value=1e-97) pale cress protein [Arabidopsis thaliana];; (*TAIR) AT2G48120.1 (e_value=3e-100) | Symbols: PAC | pale cress protein (PAC) | chr2:19679870-19681351 FORWARD LENGTH=313;; (*ITAG) Solyc09g064790.2.1 (e_value=4e-108) genomic_reference:SL2.40ch09 gene_region:57800521-57806263 transcript_region:SL2.40ch09:57800521..57806263+ functional_description:"PAC (Fragment) (AHRD V1 **-- Q7DLY1_ARATH)"; NbS00028221g0018.1 protein AED:0.14 eAED:0.16 QI:0|0.6|0.33|0.83|1|0.83|6|0|798; (*GB) gi|296086711|emb|CBI32346.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G48110.1 (e_value=0.0) | Symbols: REF4, MED33B | reduced epidermal fluorescence 4 | chr2:19673370-19679494 FORWARD LENGTH=1275;; (*ITAG) Solyc09g064780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57766534-57778114 transcript_region:SL2.40ch09:57766534..57778114+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00028221g0016.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0|0|2|0|911; (*GB) gi|27728147|gb|AAN15318.1| (e_value=0.0) isoamylase isoform 2 [Solanum tuberosum];; (*SWP) sp|Q8L735|ISOA2_ARATH (e_value=0.0) Isoamylase 2, chloroplastic OS=Arabidopsis thaliana GN=ISA2 PE=1 SV=2;; (*TAIR) AT1G03310.1 (e_value=0.0) | Symbols: ATISA2, ISA2, DBE1, BE2 | debranching enzyme 1 | chr1:813975-816623 FORWARD LENGTH=882;; (*ITAG) Solyc09g064800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57806545-57809145 transcript_region:SL2.40ch09:57806545..57809145- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00020493g0003.1 protein AED:0.40 eAED:0.40 QI:162|0.6|0.33|1|0.8|0.66|6|0|276; (*GB) gi|302143942|emb|CBI23047.3| (e_value=8e-93) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21320.2 (e_value=2e-44) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc03g082710.2.1 (e_value=1e-120) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00049718g0007.1 protein AED:0.04 eAED:0.10 QI:57|0|0|1|0.5|0.33|3|0|634; (*GB) gi|224098210|ref|XP_002311136.1| (e_value=4e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39430.1 (e_value=3e-70) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00049718g0003.1 protein AED:0.12 eAED:0.23 QI:0|0|0|1|1|1|2|0|666; (*GB) gi|296086937|emb|CBI33170.3| (e_value=5e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39435.1 (e_value=7e-26) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:16464806-16466492 REVERSE LENGTH=464;; (*ITAG) Solyc05g054770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63762854-63765253 transcript_region:SL2.40ch05:63762854..63765253+ functional_description:"Os03g0819700 protein (Fragment) (AHRD V1 *-*- Q0DMA9_ORYSJ)"; NbS00049718g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.25|1|1|4|0|235; (*ITAG) Solyc05g054790.1.1 (e_value=2e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63766571-63766906 transcript_region:SL2.40ch05:63766571..63766906+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003216g0005.1 protein AED:0.03 eAED:0.03 QI:44|1|1|1|0.5|0.4|5|153|382; (*GB) gi|255560094|ref|XP_002521065.1| (e_value=1e-169) Pectinesterase-1 precursor, putative [Ricinus communis];; (*SWP) sp|O23038|PME8_ARATH (e_value=8e-162) Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2;; (*TAIR) AT1G05310.1 (e_value=6e-163) | Symbols: | Pectin lyase-like superfamily protein | chr1:1550615-1552434 REVERSE LENGTH=393;; (*ITAG) Solyc07g043240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54205379-54208245 transcript_region:SL2.40ch07:54205379..54208245- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S4Z6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00004999g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0.5|0.33|3|0|89; (*GB) gi|351724059|ref|NP_001238580.1| (e_value=1e-57) uncharacterized protein LOC100499957 [Glycine max];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-45) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=4e-57) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc12g088320.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62198526-62200434 transcript_region:SL2.40ch12:62198526..62200434- go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00009284g0003.1 protein AED:0.15 eAED:0.15 QI:138|1|1|1|1|1|3|384|281; (*GB) gi|6552389|dbj|BAA88224.1| (e_value=0.0) myb-related transcription factor LBM4 [Nicotiana tabacum];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=7e-72) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=1e-86) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc09g090130.2.1 (e_value=8e-140) genomic_reference:SL2.40ch09 gene_region:65023341-65025440 transcript_region:SL2.40ch09:65023341..65025440+ go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **** A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00012540g0006.1 protein AED:0.15 eAED:0.17 QI:6|0|0|0.75|1|1|4|0|191; (*GB) gi|224074919|ref|XP_002304491.1| (e_value=9e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT2G45850.2 (e_value=1e-45) | Symbols: | AT hook motif DNA-binding family protein | chr2:18871901-18873457 REVERSE LENGTH=348;; (*ITAG) Solyc08g080960.2.1 (e_value=6e-90) genomic_reference:SL2.40ch08 gene_region:61254917-61259864 transcript_region:SL2.40ch08:61254917..61259864- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00012540g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|225454168|ref|XP_002271786.1| (e_value=4e-62) PREDICTED: putative ripening-related protein 2 [Vitis vinifera];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=1e-48) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc01g094450.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:77686184-77688875 transcript_region:SL2.40ch01:77686184..77688875+ functional_description:"Ripening-related protein 3 (AHRD V1 *--- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00018470g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|0|0.5|2|0|142; (*GB) gi|255557237|ref|XP_002519649.1| (e_value=1e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18372.1 (e_value=2e-44) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:10151349-10151687 REVERSE LENGTH=112;; (*ITAG) Solyc08g048540.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:40722942-40723298 transcript_region:SL2.40ch08:40722942..40723298+ functional_description:"Small nuclear ribonucleoprotein-associated protein B (AHRD V1 ***- RSMB_DICDI); contains Interpro domain(s) IPR010920 Like-Sm ribonucleoprotein-related, core "; NbS00018470g0007.1 protein AED:0.20 eAED:0.24 QI:0|0.5|0.27|0.90|0.3|0.27|11|0|511; (*GB) gi|346983342|emb|CCD33018.1| (e_value=0.0) 8-hydroxy-copalyl diphosphate synthase [Nicotiana tabacum];; (*SWP) sp|Q38802|KSA_ARATH (e_value=1e-157) Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1;; (*TAIR) AT4G02780.1 (e_value=8e-159) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802;; (*ITAG) Solyc08g005710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:565586-570966 transcript_region:SL2.40ch08:565586..570966+ go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U6_9ORYZ); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00026384g0009.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|705; (*GB) gi|359491467|ref|XP_002277225.2| (e_value=3e-164) PREDICTED: uncharacterized protein LOC100264517 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=3e-90) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc03g118870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61707579-61709994 transcript_region:SL2.40ch03:61707579..61709994- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00026384g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.2|0.8|1|1|5|0|460; (*ITAG) Solyc10g050420.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:45166439-45170183 transcript_region:SL2.40ch10:45166439..45170183- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0006355,GO:0045449 NbS00004393g0002.1 protein AED:0.25 eAED:0.25 QI:506|0.5|0.66|1|0|0|3|251|414; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc05g014340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8167788-8176116 transcript_region:SL2.40ch05:8167788..8176116- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00042370g0001.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|1|1|2|0|67; (*ITAG) Solyc02g078200.2.1 (e_value=3e-14) genomic_reference:SL2.40ch02 gene_region:37533967-37538228 transcript_region:SL2.40ch02:37533967..37538228+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6TJJ8_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00013235g0001.1 protein AED:0.17 eAED:0.21 QI:245|0.63|0.58|1|0.81|0.83|12|0|560; (*GB) gi|113205145|gb|AAT40494.2| (e_value=0.0) Putative microtubule-associated protein, identical [Solanum demissum];; (*SWP) sp|Q9FHM4|MA653_ARATH (e_value=5e-132) 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1;; (*TAIR) AT5G51600.1 (e_value=4e-133) | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707;; (*ITAG) Solyc11g072280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52559198-52565824 transcript_region:SL2.40ch11:52559198..52565824- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00013235g0013.1 protein AED:0.39 eAED:0.40 QI:0|1|0.8|1|0.25|0.6|5|0|220; (*GB) gi|21552979|gb|AAM62409.1|AF480487_1 (e_value=2e-155) Rar1 [Nicotiana tabacum];; (*SWP) sp|Q9SE33|RAR1_ARATH (e_value=2e-104) Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1;; (*TAIR) AT5G51700.1 (e_value=1e-105) | Symbols: PBS2, ATRAR1, RPR2, RAR1 | protein binding;zinc ion binding | chr5:21001373-21003143 REVERSE LENGTH=226;; (*ITAG) Solyc11g072290.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52566220-52571191 transcript_region:SL2.40ch11:52566220..52571191- functional_description:"Cysteine and histidine-rich domain-containing protein 1 (AHRD V1 **-- C1BZK4_ESOLU); contains Interpro domain(s) IPR007051 CHORD "; NbS00013235g0007.1 protein AED:0.25 eAED:0.35 QI:0|0|0|1|0|0|2|0|108; (*GB) gi|255537071|ref|XP_002509602.1| (e_value=1e-50) calmodulin, putative [Ricinus communis];; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=5e-49) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=4e-50) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc11g072270.1.1 (e_value=7e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52555099-52557686 transcript_region:SL2.40ch11:52555099..52557686- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00005125g0013.1 protein AED:0.16 eAED:0.19 QI:0|0.5|0.22|0.77|1|0.88|9|0|395; (*GB) gi|224121608|ref|XP_002330743.1| (e_value=1e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q13895|BYST_HUMAN (e_value=1e-97) Bystin OS=Homo sapiens GN=BYSL PE=1 SV=3;; (*TAIR) AT1G31660.1 (e_value=8e-136) | Symbols: | CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444;; (*ITAG) Solyc07g056550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61660092-61665125 transcript_region:SL2.40ch07:61660092..61665125+ go_terms:GO:0030515 functional_description:"Bystin (AHRD V1 ***- B5DGE9_SALSA); contains Interpro domain(s) IPR007955 Bystin "; GO:0030515 NbS00005125g0015.1 protein AED:0.27 eAED:0.27 QI:600|0.91|0.84|1|0.83|0.69|13|286|356; (*GB) gi|304368145|gb|ADM26718.1| (e_value=0.0) glycolate oxidase [Nicotiana benthamiana];; (*SWP) sp|P05414|GOX_SPIOL (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G14420.2 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821804-4823899 FORWARD LENGTH=367;; (*ITAG) Solyc07g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61655287-61658877 transcript_region:SL2.40ch07:61655287..61658877+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0S8Q7_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00005125g0014.1 protein AED:0.43 eAED:0.46 QI:0|0.5|0.33|1|1|0.66|3|170|82; (*GB) gi|224117072|ref|XP_002317469.1| (e_value=5e-14) predicted protein [Populus trichocarpa]; NbS00050115g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|125 NbS00006962g0006.1 protein AED:0.08 eAED:0.10 QI:0|0.5|0|1|0.5|0|3|0|142; (*GB) gi|86450874|gb|ABC96720.1| (e_value=9e-50) plastid fibrillin 2 [Coffea canephora];; (*SWP) sp|Q94KU5|PAP3_BRACM (e_value=4e-41) Plastid lipid-associated protein 3, chloroplastic OS=Brassica campestris GN=PAP3 PE=2 SV=1;; (*TAIR) AT2G35490.1 (e_value=1e-40) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g076480.2.1 (e_value=1e-51) genomic_reference:SL2.40ch08 gene_region:57653458-57656810 transcript_region:SL2.40ch08:57653458..57656810+ go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00006962g0001.1 protein AED:0.25 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|297742042|emb|CBI33829.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82291|PAP3_ARATH (e_value=6e-26) Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1;; (*TAIR) AT2G35490.1 (e_value=5e-27) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g005220.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:141108-143480 transcript_region:SL2.40ch08:141108..143480- go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00006962g0007.1 protein AED:0.30 eAED:0.33 QI:0|0.4|0.5|0.83|0.2|0.33|6|347|139; (*GB) gi|357516973|ref|XP_003628775.1| (e_value=1e-38) Dolichol phosphate-mannose biosynthesis regulatory protein [Medicago truncatula];; (*SWP) sp|Q2KIN1|DPM2_BOVIN (e_value=1e-20) Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3;; (*TAIR) AT1G74340.1 (e_value=5e-39) | Symbols: | dolichol phosphate-mannose biosynthesis regulatory protein-related | chr1:27948288-27948654 REVERSE LENGTH=80;; (*ITAG) Solyc08g005210.2.1 (e_value=2e-45) genomic_reference:SL2.40ch08 gene_region:139878-140641 transcript_region:SL2.40ch08:139878..140641+ go_terms:GO:0005515,GO:0004582 functional_description:"Dolichol phosphate-mannose biosynthesis regulatory protein (AHRD V1 **** C0H8B0_SALSA); contains Interpro domain(s) IPR009914 Dolichol phosphate-mannose biosynthesis regulatory "; GO:0005515,GO:0004582 NbS00004979g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|154 NbS00004979g0021.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|140; (*GB) gi|175363783|gb|ACB72463.1| (e_value=5e-53) putative virus-specific-signaling-pathway regulated protein [Nicotiana tabacum]; NbS00004979g0020.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|212; (*ITAG) Solyc07g061890.1.1 (e_value=4e-70) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62000405-62000956 transcript_region:SL2.40ch07:62000405..62000956+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004979g0018.1 protein AED:0.17 eAED:0.17 QI:0|1|0.33|1|1|1|3|0|157; (*GB) gi|334185351|ref|NP_001189893.1| (e_value=3e-54) callose synthase [Arabidopsis thaliana];; (*SWP) sp|Q9LUD7|CALS8_ARATH (e_value=1e-55) Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2;; (*TAIR) AT3G14570.2 (e_value=7e-57) | Symbols: GSL04 | glucan synthase-like 4 | chr3:4892643-4902628 FORWARD LENGTH=1950;; (*ITAG) Solyc07g061920.2.1 (e_value=2e-85) genomic_reference:SL2.40ch07 gene_region:62024605-62036385 transcript_region:SL2.40ch07:62024605..62036385+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00004979g0023.1 protein AED:0.19 eAED:0.20 QI:60|0.7|0.54|1|0.4|0.36|11|11|330; (*GB) gi|359494386|ref|XP_002267956.2| (e_value=1e-119) PREDICTED: putative callose synthase 8-like [Vitis vinifera];; (*SWP) sp|Q9LUD7|CALS8_ARATH (e_value=3e-97) Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2;; (*TAIR) AT3G14570.2 (e_value=2e-98) | Symbols: GSL04 | glucan synthase-like 4 | chr3:4892643-4902628 FORWARD LENGTH=1950;; (*ITAG) Solyc07g061920.2.1 (e_value=2e-139) genomic_reference:SL2.40ch07 gene_region:62024605-62036385 transcript_region:SL2.40ch07:62024605..62036385+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00004979g0012.1 protein AED:0.13 eAED:0.13 QI:91|-1|0|1|-1|0|1|0|54 NbS00011945g0004.1 protein AED:0.14 eAED:0.15 QI:0|1|0.66|1|1|1|6|458|486; (*GB) gi|224100951|ref|XP_002312081.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39570.1 (e_value=0.0) | Symbols: | ACT domain-containing protein | chr2:16507963-16509741 FORWARD LENGTH=411;; (*ITAG) Solyc05g054620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63640937-63645239 transcript_region:SL2.40ch05:63640937..63645239+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TDN9_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00011945g0012.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|147|203; (*GB) gi|195617694|gb|ACG30677.1| (e_value=3e-50) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=8e-51) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=6e-52) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=5e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00011945g0014.1 protein AED:0.18 eAED:0.18 QI:219|1|1|1|0.72|0.91|12|307|615; (*GB) gi|224112799|ref|XP_002316296.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8Z068|SYM_NOSS1 (e_value=0.0) Methionine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=metG PE=3 SV=1;; (*TAIR) AT3G55400.1 (e_value=0.0) | Symbols: OVA1 | methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) | chr3:20535809-20538999 REVERSE LENGTH=616;; (*ITAG) Solyc05g054600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63621360-63629242 transcript_region:SL2.40ch05:63621360..63629242- go_terms:GO:0004825 functional_description:"Methionyl-tRNA synthetase (AHRD V1 **** B2J3G3_NOSP7); contains Interpro domain(s) IPR002304 Methionyl-tRNA synthetase, class Ia "; GO:0004825 NbS00011520g0004.1 protein AED:0.25 eAED:0.25 QI:1873|0.75|0.77|1|0.62|0.55|9|293|151; (*GB) gi|225455094|ref|XP_002267997.1| (e_value=4e-54) PREDICTED: vesicle transport protein SFT2B [Vitis vinifera];; (*SWP) sp|O95562|SFT2B_HUMAN (e_value=8e-17) Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1;; (*TAIR) AT5G24170.1 (e_value=3e-41) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:8189744-8191355 REVERSE LENGTH=163;; (*ITAG) Solyc03g117000.2.1 (e_value=8e-74) genomic_reference:SL2.40ch03 gene_region:60314446-60322820 transcript_region:SL2.40ch03:60314446..60322820+ go_terms:GO:0005515 functional_description:"Vesicle transport protein SFT2A (AHRD V1 **-- C3KJB6_ANOFI); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0005515 NbS00011520g0113.1 protein AED:0.24 eAED:0.24 QI:897|0.72|0.91|0.91|0.54|0.58|12|710|195 NbS00011520g0114.1 protein AED:0.25 eAED:0.25 QI:289|0.5|0.6|1|1|1|5|251|148 NbS00011520g0106.1 protein AED:0.17 eAED:0.19 QI:590|0.90|0.86|1|0.63|0.60|23|1623|454 NbS00011520g0117.1 protein AED:0.30 eAED:0.30 QI:225|1|1|1|1|1|4|325|279 NbS00011520g0115.1 protein AED:0.37 eAED:0.39 QI:72|0.36|0.41|1|0.72|0.66|12|0|558 NbS00044769g0007.1 protein AED:0.15 eAED:0.15 QI:248|1|1|1|0.5|0.8|5|168|337; (*GB) gi|225451974|ref|XP_002279826.1| (e_value=2e-82) PREDICTED: uncharacterized protein LOC100248073 [Vitis vinifera];; (*TAIR) AT5G16030.1 (e_value=8e-66) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5238242-5240578 FORWARD LENGTH=339;; (*ITAG) Solyc02g085750.2.1 (e_value=2e-122) genomic_reference:SL2.40ch02 gene_region:43126378-43128695 transcript_region:SL2.40ch02:43126378..43128695+ functional_description:"LuxR family transcriptional regulator (Fragment) (AHRD V1 *-*- D9ZBL8_9CARY)"; NbS00044769g0006.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|142; (*ITAG) Solyc02g085760.2.1 (e_value=6e-41) genomic_reference:SL2.40ch02 gene_region:43130910-43132931 transcript_region:SL2.40ch02:43130910..43132931+ go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7MJX8_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00001418g0015.1 protein AED:0.28 eAED:0.28 QI:449|1|1|1|0.8|0.72|11|420|408; (*GB) gi|225454603|ref|XP_002265122.1| (e_value=1e-153) PREDICTED: maltose excess protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q7XTQ5|MEX1_ORYSJ (e_value=1e-120) Maltose excess protein 1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0602400 PE=2 SV=2;; (*TAIR) AT5G17520.1 (e_value=1e-120) | Symbols: RCP1, MEX1 | root cap 1 (RCP1) | chr5:5772796-5775231 REVERSE LENGTH=415;; (*ITAG) Solyc04g064720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54980220-54985175 transcript_region:SL2.40ch04:54980220..54985175- go_terms:GO:0005363 functional_description:"Maltose excess protein 1-like, chloroplastic (AHRD V1 **** MEX1_ORYSJ)"; GO:0005363 NbS00001418g0018.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.75|1|0.33|0.25|4|465|367; (*GB) gi|302142762|emb|CBI19965.3| (e_value=2e-133) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G48880.1 (e_value=6e-121) | Symbols: TBL7 | TRICHOME BIREFRINGENCE-LIKE 7 | chr1:18081033-18082650 FORWARD LENGTH=445;; (*ITAG) Solyc04g064740.2.1 (e_value=4e-141) genomic_reference:SL2.40ch04 gene_region:55001150-55004007 transcript_region:SL2.40ch04:55001150..55004007- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00059368g0006.1 protein AED:0.17 eAED:0.17 QI:323|0.85|0.75|1|0.71|0.62|8|432|454; (*GB) gi|225434297|ref|XP_002264084.1| (e_value=8e-119) PREDICTED: uncharacterized protein LOC100250213 [Vitis vinifera];; (*TAIR) AT2G30530.1 (e_value=1e-90) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). | chr2:13009071-13010867 FORWARD LENGTH=371;; (*ITAG) Solyc09g055590.2.1 (e_value=3e-99) genomic_reference:SL2.40ch09 gene_region:37857627-37861491 transcript_region:SL2.40ch09:37857627..37861491- functional_description:"Unknown Protein (AHRD V1)"; NbS00017130g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|116; (*GB) gi|196052065|gb|ACG69121.1| (e_value=2e-41) NADH dehydrogenase subunit [Larnax subtriflora];; (*SWP) sp|Q2MIE0|NU5C_SOLBU (e_value=3e-41) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum GN=ndhF PE=3 SV=1;; (*ITAG) ATCG01010.1 (e_value=3e-38) | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=746;; (*ITAG) Solyc01g017100.1.1 (e_value=6e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23876976-23877478 transcript_region:SL2.40ch01:23876976..23877478+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit L (AHRD V1 ***- NUOL_RHOCA); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00001857g0005.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|436; (*GB) gi|225452238|ref|XP_002268821.1| (e_value=4e-131) PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Vitis vinifera];; (*SWP) sp|Q9SNB7|PP264_ARATH (e_value=2e-110) Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1;; (*TAIR) AT3G46610.1 (e_value=1e-111) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:17160224-17162221 REVERSE LENGTH=665;; (*ITAG) Solyc02g093620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48994052-48996280 transcript_region:SL2.40ch02:48994052..48996280+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6I3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001857g0017.1 protein AED:0.33 eAED:0.33 QI:43|0.5|0.6|1|0.75|0.8|5|274|353; (*GB) gi|225452242|ref|XP_002268929.1| (e_value=1e-50) PREDICTED: uncharacterized protein LOC100254358 [Vitis vinifera];; (*SWP) sp|Q9LU68|CIA2_ARATH (e_value=6e-17) Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana GN=CIA2 PE=2 SV=1;; (*TAIR) AT5G14370.1 (e_value=3e-34) | Symbols: | CCT motif family protein | chr5:4632147-4633651 REVERSE LENGTH=339;; (*ITAG) Solyc02g093590.2.1 (e_value=1e-123) genomic_reference:SL2.40ch02 gene_region:48976443-48979777 transcript_region:SL2.40ch02:48976443..48979777+ functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; NbS00001857g0019.1 protein AED:0.02 eAED:0.02 QI:64|1|1|1|1|1|2|340|164; (*GB) gi|225452240|ref|XP_002271245.1| (e_value=3e-59) PREDICTED: uncharacterized protein LOC100259468 [Vitis vinifera];; (*SWP) sp|Q0WPX7|BAG2_ARATH (e_value=2e-21) BAG family molecular chaperone regulator 2 OS=Arabidopsis thaliana GN=BAG2 PE=2 SV=1;; (*TAIR) AT5G14360.1 (e_value=2e-51) | Symbols: | Ubiquitin-like superfamily protein | chr5:4631038-4631641 FORWARD LENGTH=163;; (*ITAG) Solyc02g093610.2.1 (e_value=8e-80) genomic_reference:SL2.40ch02 gene_region:48985424-48986499 transcript_region:SL2.40ch02:48985424..48986499- functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B6STZ6_MAIZE); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00001857g0018.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.4|0.8|0.5|0.6|5|298|369; (*GB) gi|225452244|ref|XP_002268976.1| (e_value=0.0) PREDICTED: probable pectate lyase 22 [Vitis vinifera];; (*SWP) sp|P24396|PLY18_SOLLC (e_value=0.0) Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1;; (*TAIR) AT5G63180.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:25341106-25343113 REVERSE LENGTH=432;; (*ITAG) Solyc02g093580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48970653-48972653 transcript_region:SL2.40ch02:48970653..48972653- go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q9M505_VITVI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00030042g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|514; (*GB) gi|359479850|ref|XP_003632362.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3-like [Vitis vinifera];; (*SWP) sp|P93050|RKF3_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1;; (*TAIR) AT2G48010.1 (e_value=0.0) | Symbols: RKF3 | receptor-like kinase in in flowers 3 | chr2:19641465-19643318 FORWARD LENGTH=617;; (*ITAG) Solyc09g074240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61509855-61511771 transcript_region:SL2.40ch09:61509855..61511771- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor-like serine/threonine kinase (AHRD V1 *-** C6FF81_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004702,GO:0005515 NbS00030042g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.93|0.94|1|0.56|0.64|17|411|422; (*GB) gi|350539447|ref|NP_001233882.1| (e_value=0.0) st3 protein [Solanum lycopersicum];; (*SWP) sp|P93051|ERDL7_ARATH (e_value=0.0) Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2;; (*TAIR) AT2G48020.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:19644441-19647007 FORWARD LENGTH=463;; (*ITAG) Solyc09g074230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61501305-61505288 transcript_region:SL2.40ch09:61501305..61505288- go_terms:GO:0005536 functional_description:"Glucose transporter 8 (AHRD V1 **** Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005536 NbS00030042g0013.1 protein AED:0.11 eAED:0.13 QI:508|1|0.75|1|1|1|4|587|508; (*GB) gi|359479852|ref|XP_002271044.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247717 [Vitis vinifera];; (*TAIR) AT2G48030.1 (e_value=6e-165) | Symbols: | DNAse I-like superfamily protein | chr2:19647834-19649988 REVERSE LENGTH=438;; (*ITAG) Solyc09g074210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61493939-61496946 transcript_region:SL2.40ch09:61493939..61496946+ functional_description:"Endonuclease/exonuclease/phosphatase family protein (AHRD V1 ***- D7LHF0_ARALY); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00041536g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|356514244|ref|XP_003525816.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100807391 [Glycine max];; (*TAIR) AT1G62500.1 (e_value=8e-19) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23132181-23133074 FORWARD LENGTH=297;; (*ITAG) Solyc08g078890.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59737899-59738777 transcript_region:SL2.40ch08:59737899..59738777+ go_terms:GO:0006869 functional_description:"At2g10940-like protein (Fragment) (AHRD V1 *-*- B3SKI0_ARAHA); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00041536g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|402; (*GB) gi|255550512|ref|XP_002516306.1| (e_value=0.0) Na(+)/H(+) antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=0.0) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=0.0) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00041536g0008.1 protein AED:0.18 eAED:0.18 QI:140|0.5|0|1|0|0|3|0|221 NbS00048886g0004.1 protein AED:0.16 eAED:0.19 QI:21|0.5|0|1|0|0.33|3|0|751; (*GB) gi|359489706|ref|XP_002280598.2| (e_value=0.0) PREDICTED: mitogen-activated protein kinase kinase kinase 7-like [Vitis vinifera];; (*SWP) sp|P25848|PHY1_CERPU (e_value=2e-42) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT5G41730.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:16684914-16687145 REVERSE LENGTH=711;; (*ITAG) Solyc01g095550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78531568-78534497 transcript_region:SL2.40ch01:78531568..78534497+ go_terms:GO:0004712 functional_description:"Receptor-interacting serine/threonine-protein kinase 1 (AHRD V1 *--* RIPK1_HUMAN); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0004712 NbS00011866g0005.1 protein AED:0.45 eAED:0.61 QI:507|0.36|0.33|1|0.63|0.41|12|0|347; (*GB) gi|255549898|ref|XP_002516000.1| (e_value=1e-66) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT3G16230.3 (e_value=5e-62) | Symbols: | Predicted eukaryotic LigT | chr3:5500991-5503303 FORWARD LENGTH=409;; (*ITAG) Solyc03g120480.2.1 (e_value=4e-72) genomic_reference:SL2.40ch03 gene_region:62916470-62924788 transcript_region:SL2.40ch03:62916470..62924788- go_terms:GO:0006265,GO:0005737,GO:0003723,GO:0005622 functional_description:"Activating signal cointegrator 1 complex subunit 1 (AHRD V1 *--- C3KHG7_ANOFI); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0006265,GO:0005737,GO:0003723,GO:0005622 NbS00058627g0001.1 protein AED:0.22 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|1171577|emb|CAA64636.1| (e_value=8e-63) hsr201 [Nicotiana tabacum];; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=2e-63) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=6e-43) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc07g049660.2.1 (e_value=2e-55) genomic_reference:SL2.40ch07 gene_region:57349065-57351095 transcript_region:SL2.40ch07:57349065..57351095+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00021095g0015.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|0.75|0.8|5|316|149; (*GB) gi|302143840|emb|CBI22701.3| (e_value=3e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEZ8|AP1S1_ARATH (e_value=3e-96) AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=2 SV=1;; (*TAIR) AT2G17380.1 (e_value=2e-97) | Symbols: AP19 | associated protein 19 | chr2:7553122-7554887 FORWARD LENGTH=161;; (*ITAG) Solyc11g005220.1.1 (e_value=5e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:188098-192547 transcript_region:SL2.40ch11:188098..192547+ go_terms:GO:0030131,GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-1 complex subunit sigma-2 (AHRD V1 ***- B6T1U4_MAIZE); contains Interpro domain(s) IPR015604 Clathrin adaptor AP1, sigma subunit "; GO:0030131,GO:0030117,GO:0015031,GO:0006810 NbS00021095g0002.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|90 NbS00021095g0011.1 protein AED:0.73 eAED:0.90 QI:0|0|0|0.5|1|1|4|0|96 NbS00040944g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|910; (*GB) gi|357449695|ref|XP_003595124.1| (e_value=2e-41) Disease resistance RPP8-like protein [Medicago truncatula];; (*SWP) sp|P0DI16|DRL44_ARATH (e_value=6e-37) Probable disease resistance protein RDL5 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=1;; (*TAIR) AT1G58807.1 (e_value=5e-38) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21780574-21783793 FORWARD LENGTH=1017;; (*ITAG) Solyc03g005670.2.1 (e_value=2e-167) genomic_reference:SL2.40ch03 gene_region:481129-483926 transcript_region:SL2.40ch03:481129..483926+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006117g0001.1 protein AED:0.01 eAED:0.01 QI:6|1|1|1|0.75|0.6|5|207|342; (*GB) gi|225448719|ref|XP_002275373.1| (e_value=1e-48) PREDICTED: WRKY transcription factor 55-like [Vitis vinifera];; (*SWP) sp|Q9SHB5|WRK55_ARATH (e_value=8e-40) WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1;; (*TAIR) AT2G40740.1 (e_value=6e-41) | Symbols: WRKY55, ATWRKY55 | WRKY DNA-binding protein 55 | chr2:16997177-16999276 FORWARD LENGTH=292;; (*ITAG) Solyc06g048870.1.1 (e_value=5e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28334966-28338066 transcript_region:SL2.40ch06:28334966..28338066- go_terms:GO:0045449 functional_description:"WRKY transcription factor 75 (AHRD V1 ***- Q6IEK6_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00025014g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|202; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-36) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00009948g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|595; (*GB) gi|359491317|ref|XP_003634263.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g61400-like [Vitis vinifera];; (*SWP) sp|Q9FLJ4|PP440_ARATH (e_value=1e-149) Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1;; (*TAIR) AT5G61400.1 (e_value=8e-151) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24681550-24683514 FORWARD LENGTH=654;; (*ITAG) Solyc06g069700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39802023-39804709 transcript_region:SL2.40ch06:39802023..39804709+ go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUK4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00009948g0011.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0.33|1|0|0.33|3|0|128; (*GB) gi|255547363|ref|XP_002514739.1| (e_value=1e-33) Thioredoxin II, putative [Ricinus communis];; (*SWP) sp|Q10M18|TRL12_ORYSJ (e_value=3e-25) Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1;; (*TAIR) AT5G61440.1 (e_value=3e-25) | Symbols: ACHT5 | atypical CYS HIS rich thioredoxin 5 | chr5:24707658-24708684 FORWARD LENGTH=245;; (*ITAG) Solyc06g069720.2.1 (e_value=3e-44) genomic_reference:SL2.40ch06 gene_region:39817893-39818907 transcript_region:SL2.40ch06:39817893..39818907+ go_terms:GO:0005515,GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0005515,GO:0016671 NbS00009948g0012.1 protein AED:0.21 eAED:0.25 QI:0|0.5|0.66|1|1|1|3|0|301; (*GB) gi|21389174|gb|AAM50521.1|AF510215_1 (e_value=3e-125) nam-like protein 18 [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=2e-107) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=1e-108) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc06g069710.2.1 (e_value=4e-146) genomic_reference:SL2.40ch06 gene_region:39809375-39810628 transcript_region:SL2.40ch06:39809375..39810628- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00059011g0002.1 protein AED:0.32 eAED:0.54 QI:0|0|0.25|1|0|0|4|0|81; (*GB) gi|255581408|ref|XP_002531512.1| (e_value=3e-19) lactoylglutathione lyase, putative [Ricinus communis];; (*ITAG) Solyc02g084410.2.1 (e_value=3e-20) genomic_reference:SL2.40ch02 gene_region:42103207-42104607 transcript_region:SL2.40ch02:42103207..42104607+ go_terms:GO:0004462 functional_description:"Glyoxalase (AHRD V1 ***- B4ERW1_WHEAT); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00059011g0003.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|0|0|3|0|90 NbS00006507g0006.1 protein AED:0.12 eAED:0.50 QI:0|0|0|0.5|0|0.5|2|0|434; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=3e-60) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=2e-20) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=1e-21) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc10g008580.1.1 (e_value=4e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00006507g0007.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.2|0.75|0.8|5|0|161 NbS00006507g0008.1 protein AED:0.42 eAED:0.57 QI:0|0|0|1|0|0|2|0|67; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-13) hypothetical protein [Nicotiana tabacum]; NbS00006507g0113.1 protein AED:0.07 eAED:0.07 QI:205|1|1|1|1|1|2|459|496 NbS00006507g0114.1 protein AED:0.22 eAED:0.22 QI:0|0.91|0.92|1|0.66|0.69|13|381|542 NbS00006507g0118.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.6|1|1|1|5|0|301 NbS00024650g0119.1 protein AED:0.10 eAED:0.10 QI:349|0.6|0.83|1|0.8|0.83|6|208|128 NbS00024650g0120.1 protein AED:0.12 eAED:0.12 QI:122|1|1|1|1|1|3|344|320 NbS00024650g0103.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|158 NbS00024650g0127.1 protein AED:0.13 eAED:0.13 QI:3|1|0.66|1|1|1|6|0|378 NbS00024650g0121.1 protein AED:0.15 eAED:0.15 QI:272|1|1|1|0.66|0.75|4|411|508 NbS00024650g0128.1 protein AED:0.29 eAED:0.29 QI:0|0.5|1|1|0.5|0.66|3|344|91 NbS00031356g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|91; (*ITAG) Solyc10g008580.1.1 (e_value=5e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00031356g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|224055111|ref|XP_002298418.1| (e_value=3e-20) f-box family protein [Populus trichocarpa];; (*ITAG) Solyc10g008580.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00031356g0009.1 protein AED:0.17 eAED:0.18 QI:0|0.77|0.5|1|0.33|0.4|10|0|444; (*GB) gi|225470301|ref|XP_002266483.1| (e_value=0.0) PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera];; (*SWP) sp|Q9SB00|PHR_ARATH (e_value=0.0) Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 PE=2 SV=1;; (*TAIR) AT1G12370.2 (e_value=0.0) | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206500-4208842 REVERSE LENGTH=496;; (*ITAG) Solyc08g079530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60206477-60209995 transcript_region:SL2.40ch08:60206477..60209995- go_terms:GO:0003913 functional_description:"Deoxyribodipyrimidine photolyase (AHRD V1 **** D6SS50_9DELT); contains Interpro domain(s) IPR008148 DNA photolyase, class 2 "; GO:0003913 NbS00052301g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|64; (*ITAG) Solyc12g088410.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62242882-62244590 transcript_region:SL2.40ch12:62242882..62244590- go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00032507g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.4|1|1|1|5|0|191; (*GB) gi|359489192|ref|XP_002272634.2| (e_value=2e-60) PREDICTED: uncharacterized amino acid permease YhdG-like [Vitis vinifera];; (*SWP) sp|Q9C5D6|CAAT9_ARATH (e_value=5e-43) Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1;; (*TAIR) AT1G05940.1 (e_value=4e-44) | Symbols: CAT9 | cationic amino acid transporter 9 | chr1:1801365-1803942 REVERSE LENGTH=569;; (*ITAG) Solyc10g018600.1.1 (e_value=4e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8719887-8729114 transcript_region:SL2.40ch10:8719887..8729114+ go_terms:GO:0005289 functional_description:"Amino acid transporter (AHRD V1 **** B7GLG7_ANOFW); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289 NbS00032507g0008.1 protein AED:0.13 eAED:0.13 QI:174|1|1|1|0.8|0.66|6|336|198; (*GB) gi|224137178|ref|XP_002327057.1| (e_value=3e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WRJ7|FK202_ARATH (e_value=2e-109) Peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP20-2 PE=1 SV=1;; (*TAIR) AT3G60370.1 (e_value=1e-110) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:22315000-22316533 REVERSE LENGTH=242;; (*ITAG) Solyc10g039270.1.1 (e_value=5e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:20899673-20903367 transcript_region:SL2.40ch10:20899673..20903367- go_terms:GO:0003755,GO:0016491 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-** C6E462_GEOSM); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0003755,GO:0016491 NbS00060728g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|114; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00036706g0003.1 protein AED:0.00 eAED:0.00 QI:214|1|1|1|1|1|2|6|200; (*GB) gi|255543809|ref|XP_002512967.1| (e_value=3e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G66350.1 (e_value=8e-47) | Symbols: SHI | Lateral root primordium (LRP) protein-related | chr5:26504714-26506143 REVERSE LENGTH=331;; (*ITAG) Solyc10g054070.1.1 (e_value=4e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50025386-50026900 transcript_region:SL2.40ch10:50025386..50026900+ functional_description:"Stylish 2b (AHRD V1 **-- D2KC74_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00036706g0008.1 protein AED:0.36 eAED:0.38 QI:0|0.5|0.33|1|0.62|0.44|9|0|559; (*GB) gi|297744754|emb|CBI38016.3| (e_value=5e-126) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G21385.1 (e_value=5e-113) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr2:9149726-9151752 FORWARD LENGTH=330;; (*ITAG) Solyc01g110160.2.1 (e_value=1e-145) genomic_reference:SL2.40ch01 gene_region:88692307-88697480 transcript_region:SL2.40ch01:88692307..88697480- go_terms:GO:0055114 functional_description:"Chromosome 11 contig 1 DNA sequence (AHRD V1 ***- Q00YQ5_OSTTA)"; GO:0055114 NbS00045972g0004.1 protein AED:0.32 eAED:0.33 QI:207|0.66|0.71|1|0.5|0.57|7|212|364; (*GB) gi|356557050|ref|XP_003546831.1| (e_value=1e-142) PREDICTED: myb family transcription factor APL-like [Glycine max];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-112) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT1G79430.2 (e_value=9e-114) | Symbols: APL, WDY | Homeodomain-like superfamily protein | chr1:29877521-29879135 REVERSE LENGTH=358;; (*ITAG) Solyc12g017370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6620091-6622817 transcript_region:SL2.40ch12:6620091..6622817+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 **-- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00045972g0006.1 protein AED:0.20 eAED:0.26 QI:0|0|0|1|0|0|2|0|178; (*GB) gi|224101317|ref|XP_002312230.1| (e_value=5e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94CD8|E134_ARATH (e_value=5e-16) Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1;; (*TAIR) AT1G79480.2 (e_value=3e-34) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=396;; (*ITAG) Solyc12g017360.1.1 (e_value=8e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6609419-6610394 transcript_region:SL2.40ch12:6609419..6610394+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00012636g0014.1 protein AED:0.08 eAED:0.10 QI:0|1|0.8|1|1|1|5|825|419; (*GB) gi|225424952|ref|XP_002263612.1| (e_value=1e-173) PREDICTED: uncharacterized protein LOC100256507 [Vitis vinifera];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=1e-49) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G44680.1 (e_value=5e-138) | Symbols: | DNA glycosylase superfamily protein | chr5:18024461-18025893 REVERSE LENGTH=353;; (*ITAG) Solyc02g082120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40419675-40422095 transcript_region:SL2.40ch02:40419675..40422095+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6TPB7_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00012636g0003.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|406; (*GB) gi|224075393|ref|XP_002304615.1| (e_value=4e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|O65440|BAME3_ARATH (e_value=3e-147) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3;; (*TAIR) AT4G20270.1 (e_value=2e-148) | Symbols: BAM3 | Leucine-rich receptor-like protein kinase family protein | chr4:10949822-10952924 FORWARD LENGTH=992;; (*ITAG) Solyc01g080770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72507024-72510368 transcript_region:SL2.40ch01:72507024..72510368- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012636g0019.1 protein AED:0.38 eAED:0.38 QI:9|0|0|0.5|1|0.5|2|0|112; (*GB) gi|255558192|ref|XP_002520123.1| (e_value=1e-24) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9M9S4|Y1143_ARATH (e_value=2e-23) Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1;; (*TAIR) AT1G14390.1 (e_value=1e-24) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:4924277-4926794 FORWARD LENGTH=747;; (*ITAG) Solyc05g007120.2.1 (e_value=2e-49) genomic_reference:SL2.40ch05 gene_region:1682919-1686805 transcript_region:SL2.40ch05:1682919..1686805- go_terms:GO:0004672 functional_description:"Receptor like kinase, RLK"; GO:0004672 NbS00012636g0013.1 protein AED:0.44 eAED:0.44 QI:0|0.33|0.5|0.75|0|0.25|4|270|144; (*GB) gi|224066769|ref|XP_002302206.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|O49287|PP127_ARATH (e_value=2e-34) Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1;; (*TAIR) AT1G77010.1 (e_value=1e-35) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28942710-28944797 FORWARD LENGTH=695;; (*ITAG) Solyc04g074160.1.1 (e_value=3e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57743013-57745070 transcript_region:SL2.40ch04:57743013..57745070+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTZ4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00012636g0015.1 protein AED:0.22 eAED:0.68 QI:0|0|0|1|0|0|2|0|67; (*ITAG) Solyc11g039380.1.1 (e_value=2e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:23177089-23177427 transcript_region:SL2.40ch11:23177089..23177427- functional_description:"Unknown Protein (AHRD V1)"; NbS00009694g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|0.71|1|1|1|7|0|636; (*GB) gi|147811086|emb|CAN61351.1| (e_value=0.0) hypothetical protein VITISV_023503 [Vitis vinifera];; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=0.0) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1;; (*TAIR) AT4G00730.1 (e_value=0.0) | Symbols: ANL2, AHDP | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:299741-304103 REVERSE LENGTH=802;; (*ITAG) Solyc03g026070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7855770-7860225 transcript_region:SL2.40ch03:7855770..7860225- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-8 (AHRD V1 *-*- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00001690g0004.1 protein AED:0.11 eAED:0.11 QI:690|1|1|1|0.52|0.5|18|976|450; (*GB) gi|255560145|ref|XP_002521090.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|C0LGV0|Y5487_ARATH (e_value=4e-154) Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1;; (*TAIR) AT5G48740.1 (e_value=3e-155) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:19765324-19769314 REVERSE LENGTH=895;; (*ITAG) Solyc09g060110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53204483-53209344 transcript_region:SL2.40ch09:53204483..53209344- go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00001690g0008.1 protein AED:0.21 eAED:0.21 QI:102|1|1|1|1|1|10|1077|376; (*GB) gi|357505247|ref|XP_003622912.1| (e_value=2e-139) hypothetical protein MTR_7g057180 [Medicago truncatula];; (*TAIR) AT4G13150.1 (e_value=4e-130) | Symbols: | unknown protein; Has 83 Blast hits to 82 proteins in 37 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:7650326-7652237 REVERSE LENGTH=347;; (*ITAG) Solyc09g060100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53199293-53204655 transcript_region:SL2.40ch09:53199293..53204655+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001690g0007.1 protein AED:0.25 eAED:0.81 QI:0|0|0|1|0|0.5|2|0|73 NbS00011502g0003.1 protein AED:0.06 eAED:0.08 QI:0|0|0|1|0.5|0.33|3|0|404; (*GB) gi|147844865|emb|CAN81231.1| (e_value=2e-24) hypothetical protein VITISV_033666 [Vitis vinifera];; (*TAIR) AT5G17910.2 (e_value=4e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). | chr5:5927906-5932292 FORWARD LENGTH=1342;; (*ITAG) Solyc06g005960.2.1 (e_value=2e-98) genomic_reference:SL2.40ch06 gene_region:942001-944304 transcript_region:SL2.40ch06:942001..944304+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030255g0011.1 protein AED:0.15 eAED:0.15 QI:103|1|1|1|0.66|0.85|7|397|443; (*GB) gi|93280154|gb|ABF06705.1| (e_value=2e-146) Joka8 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9ZUG9|BH066_ARATH (e_value=3e-63) Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1;; (*TAIR) AT2G24260.1 (e_value=2e-64) | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-10322177 REVERSE LENGTH=350;; (*ITAG) Solyc07g005400.2.1 (e_value=1e-122) genomic_reference:SL2.40ch07 gene_region:309636-314079 transcript_region:SL2.40ch07:309636..314079+ go_terms:GO:0030528 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00030255g0012.1 protein AED:0.00 eAED:0.00 QI:103|1|1|1|0|0.66|3|598|116; (*GB) gi|224091725|ref|XP_002309335.1| (e_value=4e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58005.2 (e_value=1e-55) | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr5:23482234-23482757 FORWARD LENGTH=116;; (*ITAG) Solyc07g005410.2.1 (e_value=8e-74) genomic_reference:SL2.40ch07 gene_region:317845-319328 transcript_region:SL2.40ch07:317845..319328- functional_description:"Unknown Protein (AHRD V1)"; NbS00007880g0003.1 protein AED:0.16 eAED:0.16 QI:187|1|1|1|1|1|2|355|356; (*GB) gi|255538068|ref|XP_002510099.1| (e_value=0.0) E3 ubiquitin ligase PUB14, putative [Ricinus communis];; (*SWP) sp|O22193|PUB4_ARATH (e_value=3e-86) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G01400.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:151920-152987 FORWARD LENGTH=355;; (*ITAG) Solyc04g077850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60322096-60324505 transcript_region:SL2.40ch04:60322096..60324505+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00020826g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|3|0|152; (*GB) gi|346306025|gb|AEO22187.1| (e_value=8e-48) ABCG subfamily transporter protein [Solanum tuberosum];; (*SWP) sp|O81016|AB32G_ARATH (e_value=3e-32) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT2G26910.1 (e_value=3e-33) | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 | chr2:11481623-11487874 FORWARD LENGTH=1420;; (*ITAG) Solyc06g065670.2.1 (e_value=4e-51) genomic_reference:SL2.40ch06 gene_region:37459893-37468101 transcript_region:SL2.40ch06:37459893..37468101- go_terms:GO:0042626,GO:0015086 functional_description:"ATP-binding cassette transporter (AHRD V1 **** D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626,GO:0015086 NbS00021479g0003.1 protein AED:0.14 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|150; (*TAIR) AT1G75950.1 (e_value=3e-13) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc01g111650.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:89618044-89620010 transcript_region:SL2.40ch01:89618044..89620010+ go_terms:GO:0005515 functional_description:"Skp1 (AHRD V1 ***- Q49HP3_CAPAN); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00021479g0006.1 protein AED:0.18 eAED:0.18 QI:290|1|1|1|0|0|4|50|26 NbS00021479g0002.1 protein AED:0.09 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|100; (*GB) gi|310772455|dbj|BAJ23924.1| (e_value=5e-45) actin [Saintpaulia hybrid cultivar];; (*SWP) sp|P93375|ACT7_TOBAC (e_value=5e-45) Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=2e-43) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc05g054480.2.1 (e_value=3e-43) genomic_reference:SL2.40ch05 gene_region:63549262-63552429 transcript_region:SL2.40ch05:63549262..63552429- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00021479g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|253796258|gb|ACT35733.1| (e_value=4e-46) SLF-interacting SKP1 [Petunia x hybrida];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=4e-35) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=3e-36) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00028262g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|88174751|gb|ABD39480.1| (e_value=4e-91) CYP82E4v10 [Nicotiana tabacum];; (*SWP) sp|Q9SZ46|C82C4_ARATH (e_value=1e-65) Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=9e-67) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc04g007940.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00028262g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|0.75|1|1|4|0|369; (*GB) gi|355329948|dbj|BAL14273.1| (e_value=0.0) FK506-binding protein [Nicotiana tabacum];; (*SWP) sp|Q38931|FKB62_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=0.0) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc09g057660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45713887-45718078 transcript_region:SL2.40ch09:45713887..45718078- go_terms:GO:0048156 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0048156 NbS00028262g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|698; (*GB) gi|224103989|ref|XP_002313273.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WN60|PPR48_ARATH (e_value=3e-152) Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2;; (*TAIR) AT1G18485.1 (e_value=2e-153) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970;; (*ITAG) Solyc12g099850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65165499-65167889 transcript_region:SL2.40ch12:65165499..65167889- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024774g0006.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0|0.66|3|0|379; (*GB) gi|255576858|ref|XP_002529315.1| (e_value=9e-86) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=3e-26) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G14465.1 (e_value=2e-64) | Symbols: AHL20 | AT-hook motif nuclear-localized protein 20 | chr4:8320972-8321817 FORWARD LENGTH=281;; (*ITAG) Solyc09g089620.1.1 (e_value=6e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64728667-64729527 transcript_region:SL2.40ch09:64728667..64729527- functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00024774g0008.1 protein AED:0.59 eAED:0.76 QI:0|0|0|0.4|0.25|0.2|5|0|283 NbS00031244g0004.1 protein AED:0.06 eAED:0.06 QI:60|1|0.5|1|0|0|2|0|506; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=0.0) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=0.0) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=0.0) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00031244g0002.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|81; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=4e-45) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=1e-46) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=3e-40) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=7e-48) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00058072g0002.1 protein AED:0.17 eAED:0.17 QI:175|1|1|1|0|0|2|0|109; (*GB) gi|639834|emb|CAA58823.1| (e_value=3e-52) NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=3e-40) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=2e-41) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=4e-54) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbS00016163g0007.1 protein AED:0.01 eAED:0.01 QI:175|1|1|1|1|1|3|289|223; (*GB) gi|225459777|ref|XP_002285906.1| (e_value=6e-133) PREDICTED: glutathione S-transferase PARB [Vitis vinifera];; (*SWP) sp|P46423|GSTF_HYOMU (e_value=3e-66) Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1;; (*TAIR) AT2G30860.1 (e_value=6e-66) | Symbols: ATGSTF9, GLUTTR, ATGSTF7, GSTF9 | glutathione S-transferase PHI 9 | chr2:13139132-13140057 FORWARD LENGTH=215;; (*ITAG) Solyc12g094430.1.1 (e_value=5e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62982389-62984544 transcript_region:SL2.40ch12:62982389..62984544+ functional_description:"Glutathione S-transferase (AHRD V1 ***- C7F8A3_ARAHY); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00016163g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.16|1|0.8|0.83|6|0|496; (*GB) gi|357136945|ref|XP_003570063.1| (e_value=0.0) PREDICTED: uncharacterized mscS family protein At1g78610-like [Brachypodium distachyon];; (*SWP) sp|F4IME2|MSL8_ARATH (e_value=6e-175) Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2;; (*TAIR) AT3G14810.1 (e_value=4e-174) | Symbols: MSL5 | mechanosensitive channel of small conductance-like 5 | chr3:4971223-4974216 REVERSE LENGTH=881;; (*ITAG) Solyc12g094420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62978008-62981180 transcript_region:SL2.40ch12:62978008..62981180+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 ***- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00021406g0017.1 protein AED:0.19 eAED:0.24 QI:0|0.75|0.8|1|0.75|0.8|5|52|623; (*GB) gi|224137174|ref|XP_002327055.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O22161|ADLO1_ARATH (e_value=0.0) Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1;; (*TAIR) AT2G44900.1 (e_value=0.0) | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 | chr2:18511719-18515762 REVERSE LENGTH=930;; (*ITAG) Solyc01g090420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75851153-75866838 transcript_region:SL2.40ch01:75851153..75866838- go_terms:GO:0005515,GO:0004842 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LBT5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00021406g0018.1 protein AED:0.33 eAED:0.39 QI:178|0.62|0.33|1|1|1|9|404|359; (*GB) gi|255541074|ref|XP_002511601.1| (e_value=1e-133) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|O22161|ADLO1_ARATH (e_value=3e-126) Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1;; (*TAIR) AT2G44900.1 (e_value=2e-127) | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 | chr2:18511719-18515762 REVERSE LENGTH=930;; (*ITAG) Solyc01g090420.2.1 (e_value=4e-147) genomic_reference:SL2.40ch01 gene_region:75851153-75866838 transcript_region:SL2.40ch01:75851153..75866838- go_terms:GO:0005515,GO:0004842 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LBT5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00021406g0019.1 protein AED:0.22 eAED:0.22 QI:424|1|1|1|0.81|0.91|12|310|339; (*GB) gi|255541072|ref|XP_002511600.1| (e_value=3e-151) Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q20390|PPT1_CAEEL (e_value=2e-52) Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=1e-145) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc01g090410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75848647-75851160 transcript_region:SL2.40ch01:75848647..75851160+ go_terms:GO:0008474 functional_description:"Palmitoyl protein thioesterase family protein (AHRD V1 **** D7LRP2_ARALY); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00021406g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.75|1|0|0.5|4|611|322; (*GB) gi|225453406|ref|XP_002271824.1| (e_value=1e-158) PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Vitis vinifera];; (*SWP) sp|Q1PEU4|PP201_ARATH (e_value=3e-133) Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2;; (*TAIR) AT2G44880.1 (e_value=2e-134) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:18505239-18506906 FORWARD LENGTH=555;; (*ITAG) Solyc01g090390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75844142-75845929 transcript_region:SL2.40ch01:75844142..75845929+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LBT2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00021406g0008.1 protein AED:0.45 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|148 NbS00057740g0006.1 protein AED:0.13 eAED:0.15 QI:827|0.69|0.64|1|0.46|0.28|14|279|835; (*GB) gi|147858184|emb|CAN79679.1| (e_value=0.0) hypothetical protein VITISV_034639 [Vitis vinifera];; (*SWP) sp|Q9XES1|ECA4_ARATH (e_value=0.0) Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2;; (*TAIR) AT1G07670.1 (e_value=0.0) | Symbols: ATECA4, ECA4 | endomembrane-type CA-ATPase 4 | chr1:2370305-2374196 REVERSE LENGTH=1061;; (*ITAG) Solyc11g072880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53131340-53136535 transcript_region:SL2.40ch11:53131340..53136535- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR005782 ATPase, P-type, calcium-transporting "; GO:0016020,GO:0008152,GO:0016021 NbS00058790g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|93 NbS00028445g0001.1 protein AED:0.20 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|195; (*GB) gi|356498503|ref|XP_003518090.1| (e_value=3e-54) PREDICTED: dof zinc finger protein DOF3.4 [Glycine max];; (*SWP) sp|Q9FGD6|DOF58_ARATH (e_value=1e-35) Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1;; (*TAIR) AT5G66940.1 (e_value=7e-37) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26727989-26728666 REVERSE LENGTH=225;; (*ITAG) Solyc02g090220.2.1 (e_value=9e-80) genomic_reference:SL2.40ch02 gene_region:46422517-46423548 transcript_region:SL2.40ch02:46422517..46423548+ go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9SXG5_ORYSA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00041732g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.94|0.94|0.94|0.83|0.78|19|460|739; (*GB) gi|34481799|emb|CAC87835.1| (e_value=0.0) cullin 1A [Nicotiana tabacum];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc06g084520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45890280-45896870 transcript_region:SL2.40ch06:45890280..45896870- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase Cullin 4 (AHRD V1 **** D8RM97_SELML); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00027889g0005.1 protein AED:0.10 eAED:0.10 QI:144|1|1|1|0.66|0.5|4|394|303; (*GB) gi|255540783|ref|XP_002511456.1| (e_value=7e-118) Endonuclease III, putative [Ricinus communis];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=8e-15) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT3G47830.1 (e_value=5e-108) | Symbols: | DNA glycosylase superfamily protein | chr3:17647069-17648346 FORWARD LENGTH=293;; (*ITAG) Solyc03g113880.2.1 (e_value=1e-164) genomic_reference:SL2.40ch03 gene_region:57985204-57987894 transcript_region:SL2.40ch03:57985204..57987894+ go_terms:GO:0006284,GO:0006281 functional_description:"Endonuclease III (AHRD V1 *--- D3L1Y1_9BACT); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00027889g0001.1 protein AED:0.25 eAED:0.25 QI:188|0.92|0.93|1|1|1|15|785|580; (*GB) gi|225457134|ref|XP_002280345.1| (e_value=0.0) PREDICTED: probable alpha-mannosidase I MNS5 [Vitis vinifera];; (*SWP) sp|Q9SXC9|MNS5_ARATH (e_value=0.0) Probable alpha-mannosidase I MNS5 OS=Arabidopsis thaliana GN=MNS5 PE=2 SV=1;; (*TAIR) AT1G27520.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 47 protein | chr1:9558752-9562091 FORWARD LENGTH=574;; (*ITAG) Solyc03g113900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57991471-57997056 transcript_region:SL2.40ch03:57991471..57997056+ go_terms:GO:0051787,GO:0004569 functional_description:"Alpha mannosidase-like protein (AHRD V1 **** B0CY43_LACBS); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0051787,GO:0004569 NbS00027889g0007.1 protein AED:0.15 eAED:0.40 QI:0|0|0|1|0|0|2|0|164; (*ITAG) Solyc03g113890.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57988826-57989518 transcript_region:SL2.40ch03:57988826..57989518+ go_terms:GO:0055114,GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 *-*- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0055114,GO:0005622 NbS00000247g0008.1 protein AED:0.26 eAED:0.27 QI:16|0.85|0.73|1|1|1|15|0|662; (*GB) gi|416664|sp|Q03194.1|PMA4_NICPL (e_value=0.0) RecName: Full=Plasma membrane ATPase 4; AltName: Full=Proton pump 4;; (*SWP) sp|Q03194|PMA4_NICPL (e_value=0.0) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT2G18960.1 (e_value=0.0) | Symbols: AHA1, PMA, OST2, HA1 | H(+)-ATPase 1 | chr2:8221858-8227268 FORWARD LENGTH=949;; (*ITAG) Solyc07g017780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00000247g0102.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|108 NbS00046680g0003.1 protein AED:0.22 eAED:0.39 QI:0|0|0|1|0|0|3|0|202; (*GB) gi|57013881|ref|YP_173355.1| (e_value=3e-42) hypothetical protein NitaMp007 [Nicotiana tabacum];; (*ITAG) Solyc11g056330.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00008832g0016.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.83|1|0.54|0.5|12|261|1192; (*GB) gi|356524698|ref|XP_003530965.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100788364 [Glycine max];; (*SWP) sp|Q6P4K6|S11IP_XENTR (e_value=1e-23) Serine/threonine-protein kinase 11-interacting protein OS=Xenopus tropicalis GN=stk11ip PE=2 SV=1;; (*TAIR) AT1G48540.2 (e_value=0.0) | Symbols: | Outer arm dynein light chain 1 protein | chr1:17945540-17950405 FORWARD LENGTH=1051;; (*ITAG) Solyc03g118620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61519525-61527461 transcript_region:SL2.40ch03:61519525..61527461- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 *--- D7KD26_ARALY)"; GO:0005515 NbS00008832g0003.1 protein AED:0.05 eAED:0.05 QI:833|0|0.5|1|0|1|2|52|226; (*GB) gi|85068630|gb|ABC69395.1| (e_value=3e-108) CYP71D47v2 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=2e-102) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=2e-70) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc02g062030.1.1 (e_value=2e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28192771-28194362 transcript_region:SL2.40ch02:28192771..28194362+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00008832g0022.1 protein AED:0.17 eAED:0.17 QI:124|1|1|1|0.6|0.66|6|510|334; (*GB) gi|255579907|ref|XP_002530789.1| (e_value=1e-147) surfeit locus protein, putative [Ricinus communis];; (*SWP) sp|Q9SE51|SURF1_ARATH (e_value=4e-134) Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1;; (*TAIR) AT3G17910.1 (e_value=3e-135) | Symbols: SURF1 | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr3:6133581-6136053 FORWARD LENGTH=354;; (*ITAG) Solyc03g118610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61516236-61519316 transcript_region:SL2.40ch03:61516236..61519316+ go_terms:GO:0051082 functional_description:"Surfeit locus protein 1 (AHRD V1 **-- B5XGV8_SALSA); contains Interpro domain(s) IPR002994 Surfeit locus 1 "; GO:0051082 NbS00008832g0020.1 protein AED:0.29 eAED:0.29 QI:258|0.77|0.7|1|0.66|0.6|10|589|313; (*GB) gi|225436251|ref|XP_002275861.1| (e_value=0.0) PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera];; (*SWP) sp|Q08603|PGTB2_RAT (e_value=1e-134) Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1;; (*TAIR) AT5G12210.1 (e_value=2e-176) | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl transferase beta subunit 1 | chr5:3947254-3949595 FORWARD LENGTH=321;; (*ITAG) Solyc03g118570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61502514-61505162 transcript_region:SL2.40ch03:61502514..61505162+ go_terms:GO:0005515,GO:0004663 functional_description:"Geranylgeranyltransferase type II beta subunit (AHRD V1 **** D3TMI7_GLOMM); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0005515,GO:0004663 NbS00008832g0025.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|173; (*GB) gi|15221052|ref|NP_173264.1| (e_value=1e-23) bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein [Arabidopsis thaliana];; (*TAIR) AT1G18280.1 (e_value=2e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:6294403-6295207 FORWARD LENGTH=180;; (*ITAG) Solyc03g118580.2.1 (e_value=2e-48) genomic_reference:SL2.40ch03 gene_region:61505538-61507047 transcript_region:SL2.40ch03:61505538..61507047+ functional_description:"Lipid binding protein (AHRD V1 *-*- D7KRJ2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00010337g0007.1 protein AED:0.08 eAED:0.08 QI:188|1|1|1|0.91|0.84|13|231|392; (*GB) gi|193290684|gb|ACF17650.1| (e_value=0.0) putative enoyl-acyl-carrier-protein reductase [Capsicum annuum];; (*SWP) sp|P80030|FABI_BRANA (e_value=0.0) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2;; (*TAIR) AT2G05990.2 (e_value=0.0) | Symbols: MOD1, ENR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390;; (*ITAG) Solyc10g078740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59792276-59795246 transcript_region:SL2.40ch10:59792276..59795246- go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl reductase (AHRD V1 ***- P93062_BRANA); contains Interpro domain(s) IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) "; GO:0008152,GO:0055114 NbS00010337g0011.1 protein AED:0.08 eAED:0.08 QI:245|1|1|1|0.66|0.85|7|205|383; (*GB) gi|225441421|ref|XP_002279026.1| (e_value=1e-172) PREDICTED: non-structural maintenance of chromosome element 4 [Vitis vinifera];; (*SWP) sp|Q6BDR8|NSE4_SCHPO (e_value=1e-20) Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse4 PE=1 SV=1;; (*TAIR) AT1G51130.1 (e_value=2e-124) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc10g078730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59788055-59791278 transcript_region:SL2.40ch10:59788055..59791278+ functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 **-- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00010337g0012.1 protein AED:0.10 eAED:0.10 QI:0|1|0.71|1|0.66|0.71|7|0|342; (*GB) gi|224088208|ref|XP_002308371.1| (e_value=2e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=3e-32) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G06800.1 (e_value=6e-67) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g078720.1.1 (e_value=3e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00015537g0010.1 protein AED:0.14 eAED:0.14 QI:51|0.25|0.4|1|0.75|0.8|5|0|188; (*GB) gi|297740327|emb|CBI30509.3| (e_value=2e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|P50165|TRNH_DATST (e_value=6e-50) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT5G06060.1 (e_value=3e-54) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc10g086620.1.1 (e_value=5e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64714551-64717037 transcript_region:SL2.40ch10:64714551..64717037+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Tropinone reductase (AHRD V1 **-- B6TAE7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0016020,GO:0008152,GO:0055114 NbS00015537g0007.1 protein AED:0.71 eAED:0.49 QI:6|0|0|0.6|0.75|0.6|5|0|255; (*GB) gi|379987676|gb|AFD22618.1| (e_value=4e-102) dicer-like 1 protein, partial [Nicotiana attenuata];; (*SWP) sp|Q9SP32|DCL1_ARATH (e_value=1e-85) Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2;; (*TAIR) AT1G01040.2 (e_value=9e-87) | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1910;; (*ITAG) Solyc10g005130.2.1 (e_value=6e-97) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00053607g0004.1 protein AED:0.10 eAED:0.14 QI:0|0.66|0.68|1|0.77|0.73|19|247|1108; (*GB) gi|225432997|ref|XP_002280814.1| (e_value=0.0) PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Vitis vinifera];; (*SWP) sp|Q9FIY7|SM3L3_ARATH (e_value=0.0) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1;; (*TAIR) AT5G43530.1 (e_value=0.0) | Symbols: | Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277;; (*ITAG) Solyc03g005460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:349801-357078 transcript_region:SL2.40ch03:349801..357078- go_terms:GO:0004842 functional_description:"DNA helicase (AHRD V1 **-- C4R4A1_PICPG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004842 NbS00024083g0010.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.33|0.25|4|0|473; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=5e-33) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q84W80|FBL42_ARATH (e_value=2e-28) F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2;; (*TAIR) AT3G03360.1 (e_value=2e-29) | Symbols: | F-box/RNI-like superfamily protein | chr3:795218-796918 FORWARD LENGTH=481;; (*ITAG) Solyc04g057950.1.1 (e_value=6e-137) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00024083g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.66|1|0|0.66|3|762|336; (*GB) gi|147846786|emb|CAN78503.1| (e_value=2e-33) hypothetical protein VITISV_023071 [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=7e-23) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=5e-24) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc01g065740.2.1 (e_value=3e-77) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024083g0008.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|60 NbS00006686g0006.1 protein AED:0.09 eAED:0.09 QI:409|0.88|0.89|1|0.77|0.73|19|353|1014; (*GB) gi|334855489|gb|AEH16636.1| (e_value=0.0) kinesin-like protein [Nicotiana tabacum];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G47500.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983;; (*ITAG) Solyc09g075480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62672892-62679962 transcript_region:SL2.40ch09:62672892..62679962- go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00009917g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|325|339; (*GB) gi|224080117|ref|XP_002306022.1| (e_value=7e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|B1B5D5|NNJA3_WHEAT (e_value=2e-45) Ninja-family protein 3 OS=Triticum aestivum GN=AFP-D1 PE=3 SV=1;; (*TAIR) AT3G29575.4 (e_value=3e-40) | Symbols: AFP3 | ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231;; (*ITAG) Solyc02g088910.2.1 (e_value=4e-122) genomic_reference:SL2.40ch02 gene_region:45411058-45413952 transcript_region:SL2.40ch02:45411058..45413952- go_terms:GO:0005515 functional_description:"Ninja-family protein 3 (AHRD V1 ***- NNJA3_WHEAT); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515 NbS00004718g0002.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.33|1|1|1|3|0|224; (*GB) gi|33320067|gb|AAQ05796.1|AF477956_1 (e_value=6e-91) transcription factor Myb [Capsicum annuum];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=2e-67) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT3G12720.1 (e_value=2e-80) | Symbols: ATY53, ATMYB67, MYB67 | myb domain protein 67 | chr3:4043407-4044522 REVERSE LENGTH=307;; (*ITAG) Solyc02g082040.2.1 (e_value=1e-94) genomic_reference:SL2.40ch02 gene_region:40359966-40361271 transcript_region:SL2.40ch02:40359966..40361271+ go_terms:GO:0003677,GO:0045449 functional_description:"Transcription factor Myb (AHRD V1 **-- Q71KV1_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00030084g0006.1 protein AED:0.28 eAED:0.28 QI:257|0.9|0.72|1|0.8|0.81|11|0|698; (*GB) gi|359476100|ref|XP_002282428.2| (e_value=0.0) PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q38854|DXS_ARATH (e_value=0.0) 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=DXS PE=1 SV=2;; (*TAIR) AT5G11380.1 (e_value=0.0) | Symbols: DXPS3 | 1-deoxy-D-xylulose 5-phosphate synthase 3 | chr5:3630172-3633250 FORWARD LENGTH=700;; (*ITAG) Solyc08g066950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53032479-53046037 transcript_region:SL2.40ch08:53032479..53046037+ go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 3 (AHRD V1 **** D7M3Q0_ARALY); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00007689g0003.1 protein AED:0.15 eAED:0.15 QI:361|1|0.66|1|1|1|3|0|301; (*GB) gi|21105748|gb|AAM34773.1|AF509873_1 (e_value=0.0) nam-like protein 10 [Petunia x hybrida];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=7e-135) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=5e-136) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc06g060230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34577474-34578909 transcript_region:SL2.40ch06:34577474..34578909- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GU14_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00008532g0005.1 protein AED:0.12 eAED:0.12 QI:348|1|1|1|0.85|0.75|8|544|652; (*GB) gi|225425605|ref|XP_002265829.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 2 [Vitis vinifera];; (*SWP) sp|Q9CAL3|CRK2_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1;; (*TAIR) AT1G70520.1 (e_value=0.0) | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2 | chr1:26584888-26587334 REVERSE LENGTH=649;; (*ITAG) Solyc05g005070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:74921-78722 transcript_region:SL2.40ch05:74921..78722+ go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00008532g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.57|0.62|0.87|1|1|8|488|709; (*GB) gi|225425611|ref|XP_002266015.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 3 [Vitis vinifera];; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1;; (*TAIR) AT1G70530.1 (e_value=0.0) | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=646;; (*ITAG) Solyc05g005060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:67970-69503 transcript_region:SL2.40ch05:67970..69503+ go_terms:GO:0004672 functional_description:"S-receptor kinase (AHRD V1 **** Q43393_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00014240g0001.1 protein AED:0.29 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|56694219|gb|AAW22881.1| (e_value=1e-45) putative EARLY flowering 4 protein [Solanum lycopersicum];; (*SWP) sp|O04211|ELF4_ARATH (e_value=3e-30) Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1;; (*TAIR) AT2G40080.1 (e_value=3e-31) | Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111;; (*ITAG) Solyc06g051660.1.1 (e_value=2e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:31685006-31685371 transcript_region:SL2.40ch06:31685006..31685371- functional_description:"ELF4-like protein (AHRD V1 ***- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00014240g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.8|1|0.66|0.6|10|1345|305; (*GB) gi|56694218|gb|AAW22880.1| (e_value=1e-115) putative cyclophilin [Solanum lycopersicum];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=4e-89) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT2G29960.1 (e_value=3e-90) | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201;; (*ITAG) Solyc06g051650.2.1 (e_value=2e-118) genomic_reference:SL2.40ch06 gene_region:31680154-31684846 transcript_region:SL2.40ch06:31680154..31684846+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase B (AHRD V1 **** PPIB_DICDI); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00001344g0016.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.6|1|0.5|0.4|5|0|317; (*GB) gi|356566333|ref|XP_003551387.1| (e_value=4e-67) PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Glycine max];; (*SWP) sp|Q9SV61|XTH1_ARATH (e_value=1e-62) Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=2;; (*TAIR) AT4G13080.1 (e_value=9e-64) | Symbols: XTH1 | xyloglucan endotransglucosylase/hydrolase 1 | chr4:7626612-7628367 REVERSE LENGTH=292;; (*ITAG) Solyc06g083400.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45096186-45098342 transcript_region:SL2.40ch06:45096186..45098342- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q2MK81_9ROSA); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16 "; GO:0016798 NbS00001344g0008.1 protein AED:0.41 eAED:0.42 QI:0|0|0.25|0.75|1|1|4|0|188; (*GB) gi|270209076|gb|ACZ64223.1| (e_value=5e-39) RPM1 interacting protein 4 transcript 2 [Lactuca saligna];; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=2e-30) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1;; (*TAIR) AT3G25070.1 (e_value=1e-31) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc06g083390.2.1 (e_value=2e-63) genomic_reference:SL2.40ch06 gene_region:45091916-45094287 transcript_region:SL2.40ch06:45091916..45094287- go_terms:GO:0005515 functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; GO:0005515 NbS00001344g0014.1 protein AED:0.14 eAED:0.14 QI:1260|1|0.5|1|1|1|2|0|525; (*GB) gi|225467717|ref|XP_002262639.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259020 [Vitis vinifera];; (*TAIR) AT3G07210.1 (e_value=0.0) | Symbols: | unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:2293000-2295119 REVERSE LENGTH=547;; (*ITAG) Solyc06g083370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45080571-45084790 transcript_region:SL2.40ch06:45080571..45084790+ go_terms:GO:0003824 functional_description:"Os01g0917200 protein (Fragment) (AHRD V1 ***- Q0JGL5_ORYSJ); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00001344g0015.1 protein AED:0.24 eAED:0.24 QI:119|1|1|1|0.33|0.5|4|467|71; (*GB) gi|224069248|ref|XP_002326311.1| (e_value=2e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39290|RPAB5_BRANA (e_value=2e-43) DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1;; (*TAIR) AT1G11475.1 (e_value=3e-44) | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases N / 8 kDa subunit | chr1:3862520-3863805 FORWARD LENGTH=71;; (*ITAG) Solyc06g083360.2.1 (e_value=2e-48) genomic_reference:SL2.40ch06 gene_region:45077113-45079295 transcript_region:SL2.40ch06:45077113..45079295+ go_terms:GO:0005515 functional_description:"DNA-directed RNA Polymerase II subunit L (AHRD V1 ***- A3GGI8_PICST); contains Interpro domain(s) IPR000268 RNA polymerases, N/8 kDa subunit "; GO:0005515 NbS00013830g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|332; (*GB) gi|27529846|dbj|BAC53938.1| (e_value=2e-171) Myb-like protein [Nicotiana tabacum];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=1e-64) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=6e-70) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc04g078420.1.1 (e_value=8e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60755266-60756252 transcript_region:SL2.40ch04:60755266..60756252- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00023547g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.66|3|0|291; (*GB) gi|147852210|emb|CAN80139.1| (e_value=4e-111) hypothetical protein VITISV_028513 [Vitis vinifera];; (*SWP) sp|Q39110|GAOX1_ARATH (e_value=3e-17) Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2;; (*TAIR) AT1G52800.1 (e_value=2e-92) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067870.2.1 (e_value=3e-99) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00040570g0006.1 protein AED:0.15 eAED:0.21 QI:0|0.83|0.71|1|0.83|0.85|7|0|444; (*GB) gi|359496149|ref|XP_002270437.2| (e_value=2e-162) PREDICTED: ankyrin repeat domain-containing protein, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q05753|AKRP_ARATH (e_value=1e-140) Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2;; (*TAIR) AT5G66055.1 (e_value=8e-142) | Symbols: EMB16, EMB2036, AKRP | ankyrin repeat protein | chr5:26417425-26419234 REVERSE LENGTH=435;; (*ITAG) Solyc02g061820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27923145-27927547 transcript_region:SL2.40ch02:27923145..27927547- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain 1 (AHRD V1 *--- B5AZT4_CRIGR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00011210g0003.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|156571764|gb|ABU84809.1| (e_value=2e-63) putative dehydration-responsive element binding protein [Broussonetia papyrifera];; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=1e-49) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1;; (*TAIR) AT1G19210.1 (e_value=1e-50) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:6626973-6627530 REVERSE LENGTH=185;; (*ITAG) Solyc12g009240.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2519864-2520610 transcript_region:SL2.40ch12:2519864..2520610- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00022042g0015.1 protein AED:0.11 eAED:0.12 QI:12|1|1|1|0.81|0.83|12|274|305; (*GB) gi|356523747|ref|XP_003530496.1| (e_value=7e-153) PREDICTED: proteasomal ubiquitin receptor ADRM1-like [Glycine max];; (*SWP) sp|Q6NZ09|ADRM1_DANRE (e_value=5e-32) Proteasomal ubiquitin receptor ADRM1 OS=Danio rerio GN=adrm1b PE=1 SV=1;; (*TAIR) AT2G26590.3 (e_value=6e-124) | Symbols: RPN13 | regulatory particle non-ATPase 13 | chr2:11311182-11314717 REVERSE LENGTH=300;; (*ITAG) Solyc07g017400.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6881530-6896165 transcript_region:SL2.40ch07:6881530..6896165+ go_terms:GO:0008538,GO:0070628 functional_description:"Proteasomal ubiquitin receptor ADRM1-like protein (AHRD V1 *-*- D0NYK6_PHYIN); contains Interpro domain(s) IPR006773 Adhesion regulating molecule "; GO:0008538,GO:0070628 NbS00022042g0016.1 protein AED:0.25 eAED:0.25 QI:154|1|1|1|0.75|0.6|5|381|188; (*GB) gi|76573365|gb|ABA46787.1| (e_value=1e-100) unknown [Solanum tuberosum];; (*TAIR) AT1G26750.1 (e_value=1e-46) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9246857-9248053 FORWARD LENGTH=195;; (*ITAG) Solyc07g017410.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:6911254-6913069 transcript_region:SL2.40ch07:6911254..6913069+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022042g0020.1 protein AED:0.36 eAED:0.37 QI:0|0.62|0.52|0.70|0.87|0.94|17|0|850; (*GB) gi|225444607|ref|XP_002277404.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=8e-126) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT5G20840.1 (e_value=0.0) | Symbols: | Phosphoinositide phosphatase family protein | chr5:7061638-7068572 REVERSE LENGTH=831;; (*ITAG) Solyc07g017430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6923243-6960956 transcript_region:SL2.40ch07:6923243..6960956- go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- B2WG36_PYRTR); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00052435g0007.1 protein AED:0.34 eAED:0.38 QI:0|0.6|0.16|1|0.8|0.83|6|0|232; (*GB) gi|224099913|ref|XP_002311673.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XI08|XB34_ORYSJ (e_value=1e-17) Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1;; (*TAIR) AT3G23280.1 (e_value=5e-18) | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis thaliana | chr3:8321588-8324109 FORWARD LENGTH=462;; (*ITAG) Solyc09g090160.2.1 (e_value=1e-24) genomic_reference:SL2.40ch09 gene_region:65046640-65052937 transcript_region:SL2.40ch09:65046640..65052937+ go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 *--- B6U990_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00003566g0004.1 protein AED:0.09 eAED:0.11 QI:67|0.85|0.75|1|0.71|0.75|8|288|512; (*GB) gi|255582913|ref|XP_002532228.1| (e_value=0.0) TRANSPARENT TESTA 12 protein, putative [Ricinus communis];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=2e-113) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT5G52450.1 (e_value=1e-176) | Symbols: | MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486;; (*ITAG) Solyc04g007540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1232799-1236007 transcript_region:SL2.40ch04:1232799..1236007- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00011855g0001.1 protein AED:0.09 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|255568331|ref|XP_002525140.1| (e_value=1e-42) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SLC4|ATL40_ARATH (e_value=3e-29) RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2 SV=1;; (*TAIR) AT2G42350.1 (e_value=2e-30) | Symbols: | RING/U-box superfamily protein | chr2:17639245-17639898 FORWARD LENGTH=217;; (*ITAG) Solyc10g008080.1.1 (e_value=1e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:2226281-2226721 transcript_region:SL2.40ch10:2226281..2226721+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 ***- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011855g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|297840375|ref|XP_002888069.1| (e_value=9e-50) OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G61790.1 (e_value=3e-52) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc10g008090.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2227517-2228521 transcript_region:SL2.40ch10:2227517..2228521+ go_terms:GO:0015157 functional_description:"Oligosaccharide transporter (AHRD V1 **-* B4FSV8_MAIZE); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00011855g0006.1 protein AED:0.20 eAED:0.20 QI:76|0.5|0.71|0.85|0|0.14|7|477|231; (*GB) gi|302143378|emb|CBI21939.3| (e_value=3e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42390.1 (e_value=4e-40) | Symbols: | protein kinase C substrate, heavy chain-related | chr2:17651381-17652509 REVERSE LENGTH=212;; (*ITAG) Solyc10g008100.2.1 (e_value=5e-72) genomic_reference:SL2.40ch10 gene_region:2229053-2232432 transcript_region:SL2.40ch10:2229053..2232432- functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B5X0Z0_SALSA)"; NbS00011855g0105.1 protein AED:0.30 eAED:0.30 QI:0|0|0.5|1|0|0.5|2|0|144 NbS00054522g0003.1 protein AED:0.12 eAED:0.12 QI:29|0.88|0.8|1|1|1|10|0|426; (*GB) gi|225451285|ref|XP_002272750.1| (e_value=1e-150) PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis vinifera];; (*SWP) sp|Q08647|PUS7_YEAST (e_value=1e-40) Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS7 PE=1 SV=1;; (*TAIR) AT3G04820.1 (e_value=3e-149) | Symbols: | Pseudouridine synthase family protein | chr3:1321453-1325949 REVERSE LENGTH=715;; (*ITAG) Solyc01g097600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:80143750-80150853 transcript_region:SL2.40ch01:80143750..80150853- go_terms:GO:0009451 functional_description:"tRNA pseudouridine synthase D (AHRD V1 ***- D3BIM4_POLPA); contains Interpro domain(s) IPR001656 Pseudouridine synthase, TruD "; GO:0009451 NbS00027397g0006.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|85; (*ITAG) Solyc01g067970.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69400119-69400415 transcript_region:SL2.40ch01:69400119..69400415+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027397g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|135; (*ITAG) Solyc01g097570.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:80126257-80127038 transcript_region:SL2.40ch01:80126257..80127038+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027397g0010.1 protein AED:0.09 eAED:0.09 QI:68|0.9|0.72|1|0.8|0.90|11|0|474; (*GB) gi|298204887|emb|CBI34194.3| (e_value=1e-180) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74343|YH2X_SCHPO (e_value=4e-54) Putative pseudouridine synthase C1A4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1A4.09 PE=2 SV=1;; (*TAIR) AT3G04820.1 (e_value=7e-175) | Symbols: | Pseudouridine synthase family protein | chr3:1321453-1325949 REVERSE LENGTH=715;; (*ITAG) Solyc01g097600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:80143750-80150853 transcript_region:SL2.40ch01:80143750..80150853- go_terms:GO:0009451 functional_description:"tRNA pseudouridine synthase D (AHRD V1 ***- D3BIM4_POLPA); contains Interpro domain(s) IPR001656 Pseudouridine synthase, TruD "; GO:0009451 NbS00027397g0007.1 protein AED:0.25 eAED:0.25 QI:50|1|1|1|0.62|0.55|9|610|267; (*GB) gi|298204887|emb|CBI34194.3| (e_value=4e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q08647|PUS7_YEAST (e_value=4e-24) Multisubstrate pseudouridine synthase 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS7 PE=1 SV=1;; (*TAIR) AT3G04820.1 (e_value=1e-74) | Symbols: | Pseudouridine synthase family protein | chr3:1321453-1325949 REVERSE LENGTH=715;; (*ITAG) Solyc01g097590.2.1 (e_value=2e-155) genomic_reference:SL2.40ch01 gene_region:80136686-80143704 transcript_region:SL2.40ch01:80136686..80143704- go_terms:GO:0009451 functional_description:"Pseudouridine synthase (AHRD V1 ***- A6ZP82_YEAS7); contains Interpro domain(s) IPR001656 Pseudouridine synthase, TruD "; GO:0009451 NbC26041616g0001.1 protein AED:0.03 eAED:0.03 QI:936|1|0.83|1|0.6|0.66|6|0|212; (*GB) gi|225439408|ref|XP_002263824.1| (e_value=8e-68) PREDICTED: uncharacterized protein LOC100257563 [Vitis vinifera];; (*TAIR) AT5G05570.2 (e_value=1e-44) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc09g005600.2.1 (e_value=4e-108) genomic_reference:SL2.40ch09 gene_region:406341-420961 transcript_region:SL2.40ch09:406341..420961- go_terms:GO:0000166 functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 *--- L2GL2_PONAB); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00004937g0003.1 protein AED:0.21 eAED:0.21 QI:255|0.90|1|1|0.90|0.91|12|208|746; (*GB) gi|224053434|ref|XP_002297817.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55680|Y005_SYNY3 (e_value=6e-128) Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1;; (*TAIR) AT3G24190.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:8743319-8747703 FORWARD LENGTH=793;; (*ITAG) Solyc09g091580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66176557-66185006 transcript_region:SL2.40ch09:66176557..66185006- go_terms:GO:0006468 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_CHICK); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0006468 NbS00004937g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.66|0.83|1|1|6|0|369; (*GB) gi|255554178|ref|XP_002518129.1| (e_value=0.0) monoxygenase, putative [Ricinus communis];; (*SWP) sp|Q8R1S0|COQ6_MOUSE (e_value=1e-62) Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus musculus GN=Coq6 PE=2 SV=2;; (*TAIR) AT3G24200.2 (e_value=1e-174) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:8748095-8751166 REVERSE LENGTH=507;; (*ITAG) Solyc09g091570.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66169902-66176704 transcript_region:SL2.40ch09:66169902..66176704+ go_terms:GO:0042802,GO:0016491 functional_description:"Ubiquinone biosynthesis hydroxylase UbiH/UbiF/VisC/COQ6 family (AHRD V1 ***- D8KAW7_9GAMM); contains Interpro domain(s) IPR000689 Ubiquinone biosynthesis monooxygenase, COQ6-type "; GO:0042802,GO:0016491 NbS00004937g0014.1 protein AED:0.10 eAED:0.10 QI:88|1|1|1|0.57|1|8|322|272; (*GB) gi|356566431|ref|XP_003551435.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100804648 [Glycine max];; (*TAIR) AT3G07030.1 (e_value=7e-53) | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405;; (*ITAG) Solyc09g091590.2.1 (e_value=1e-81) genomic_reference:SL2.40ch09 gene_region:66186990-66192207 transcript_region:SL2.40ch09:66186990..66192207+ go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00012538g0011.1 protein AED:0.06 eAED:0.06 QI:0|1|0.81|1|1|0.90|11|0|892; (*GB) gi|350536663|ref|NP_001234258.1| (e_value=0.0) potassium channel [Solanum lycopersicum];; (*SWP) sp|Q38998|AKT1_ARATH (e_value=0.0) Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2;; (*TAIR) AT2G26650.1 (e_value=0.0) | Symbols: AKT1, ATAKT1, KT1 | K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857;; (*ITAG) Solyc12g006850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1258370-1264932 transcript_region:SL2.40ch12:1258370..1264932- go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- Q9LEG6_SOLLC); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00012538g0012.1 protein AED:0.30 eAED:0.31 QI:37|0.87|0.88|1|0.37|0.44|9|198|292; (*GB) gi|225445152|ref|XP_002284033.1| (e_value=6e-100) PREDICTED: 7SK snRNA methylphosphate capping enzyme [Vitis vinifera];; (*SWP) sp|Q7L2J0|MEPCE_HUMAN (e_value=4e-43) 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1;; (*TAIR) AT5G51130.1 (e_value=5e-97) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20781896-20783901 FORWARD LENGTH=318;; (*ITAG) Solyc05g050000.2.1 (e_value=1e-146) genomic_reference:SL2.40ch05 gene_region:58997556-59001737 transcript_region:SL2.40ch05:58997556..59001737- go_terms:GO:0004652 functional_description:"Bicoid-interacting 3 domain-containing protein (Fragment) (AHRD V1 *-*- C6F7A2_PSEMZ); contains Interpro domain(s) IPR010675 Bicoid-interacting 3 "; GO:0004652 NbS00012538g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|506; (*GB) gi|225445088|ref|XP_002280407.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242436 [Vitis vinifera];; (*SWP) sp|Q76NT0|MRM1_DICDI (e_value=8e-35) Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum GN=mrm1 PE=3 SV=1;; (*TAIR) AT2G19870.1 (e_value=1e-167) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr2:8576034-8577803 FORWARD LENGTH=589;; (*ITAG) Solyc05g017990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19345633-19347637 transcript_region:SL2.40ch05:19345633..19347637+ go_terms:GO:0008989 functional_description:"tRNA/rRNA methyltransferase (AHRD V1 *-** D9V4V2_9ACTO); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0008989 NbS00012538g0018.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|5|0|257; (*GB) gi|357470629|ref|XP_003605599.1| (e_value=9e-89) Apocytochrome f [Medicago truncatula];; (*SWP) sp|Q8S8W4|CYF_ATRBE (e_value=7e-81) Apocytochrome f OS=Atropa belladonna GN=petA PE=3 SV=1;; (*ITAG) ATCG00540.1 (e_value=1e-76) | Symbols: PETA | photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320;; (*ITAG) Solyc01g007380.1.1 (e_value=4e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1859332-1860294 transcript_region:SL2.40ch01:1859332..1860294+ go_terms:GO:0031361 functional_description:"Apocytochrome f (AHRD V1 ***- D3WBH0_9AQUA); contains Interpro domain(s) IPR002325 Cytochrome f "; GO:0031361 NbS00012538g0017.1 protein AED:0.37 eAED:0.43 QI:0|0|0|1|0|0|4|0|191; (*GB) gi|290488774|gb|ADD30771.1| (e_value=1e-29) photosystem I assembly protein ycf4 [Lonicera japonica];; (*SWP) sp|P12207|YCF4_TOBAC (e_value=5e-31) Photosystem I assembly protein Ycf4 OS=Nicotiana tabacum GN=ycf4 PE=3 SV=1;; (*ITAG) ATCG00520.1 (e_value=7e-26) | Symbols: YCF4 | unfolded protein binding | chrC:59772-60326 FORWARD LENGTH=184;; (*ITAG) Solyc01g007360.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:1857130-1857693 transcript_region:SL2.40ch01:1857130..1857693+ go_terms:GO:0016021 functional_description:"Photosystem I assembly protein ycf4 (AHRD V1 ***- Q06R54_9LAMI); contains Interpro domain(s) IPR003359 Photosystem I assembly Ycf4 "; GO:0016021 NbS00012538g0014.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|81; (*GB) gi|21633740|gb|AAM55753.1| (e_value=1e-15) PsbF [Breweria rotundifolia];; (*SWP) sp|Q7IW43|PSBF_ZAMFU (e_value=4e-17) Cytochrome b559 subunit beta OS=Zamia furfuracea GN=psbF PE=3 SV=1;; (*ITAG) ATCG00570.1 (e_value=5e-17) | Symbols: PSBF | photosystem II reaction center protein F | chrC:63942-64061 REVERSE LENGTH=39;; (*ITAG) Solyc04g049240.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:40202540-40203432 transcript_region:SL2.40ch04:40202540..40203432+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012538g0015.1 protein AED:0.38 eAED:0.51 QI:0|0|0|1|0|0|2|0|64; (*GB) gi|21633600|gb|AAM55641.1| (e_value=6e-25) PsbE [Merremia hastata];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=2e-26) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=1e-27) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83; NbS00008891g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|255553817|ref|XP_002517949.1| (e_value=5e-31) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SKW5|ERF55_ARATH (e_value=3e-31) Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1;; (*TAIR) AT1G36060.1 (e_value=3e-32) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:13454718-13455662 REVERSE LENGTH=314;; (*ITAG) Solyc12g013660.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4505048-4506109 transcript_region:SL2.40ch12:4505048..4506109+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00008891g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|1|1|1|4|0|204; (*GB) gi|21068893|dbj|BAB93003.1| (e_value=8e-97) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q9SDT1|POR_DAUCA (e_value=8e-93) Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1;; (*TAIR) AT4G27440.2 (e_value=3e-93) | Symbols: PORB | protochlorophyllide oxidoreductase B | chr4:13725648-13727107 FORWARD LENGTH=401;; (*ITAG) Solyc12g013710.1.1 (e_value=5e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4544984-4547459 transcript_region:SL2.40ch12:4544984..4547459- go_terms:GO:0004745 functional_description:"Protochlorophyllide reductase (AHRD V1 ***- Q8LAV9_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0004745 NbS00008891g0016.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.33|1|1|3|0|80; (*GB) gi|21068893|dbj|BAB93003.1| (e_value=1e-21) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q41249|PORA_CUCSA (e_value=5e-14) Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1;; (*ITAG) Solyc12g013710.1.1 (e_value=2e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4544984-4547459 transcript_region:SL2.40ch12:4544984..4547459- go_terms:GO:0004745 functional_description:"Protochlorophyllide reductase (AHRD V1 ***- Q8LAV9_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0004745 NbS00008891g0021.1 protein AED:0.04 eAED:0.04 QI:69|1|1|1|1|1|4|1415|253; (*GB) gi|225461387|ref|XP_002284777.1| (e_value=3e-145) PREDICTED: stem-specific protein TSJT1 [Vitis vinifera];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=1e-28) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=2e-144) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc12g013700.1.1 (e_value=5e-174) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4542236-4544315 transcript_region:SL2.40ch12:4542236..4544315+ functional_description:"Aluminum-induced protein-like protein (AHRD V1 ***- Q8S2R9_THEHA)"; NbS00008891g0028.1 protein AED:0.05 eAED:0.08 QI:0|0.25|0|1|0.25|0.2|5|0|299; (*GB) gi|359473878|ref|XP_003631372.1| (e_value=9e-122) PREDICTED: gibberellin 20 oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q39112|GAOX3_ARATH (e_value=5e-33) Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1;; (*TAIR) AT5G07200.1 (e_value=4e-34) | Symbols: YAP169, GA20OX3, ATGA20OX3 | gibberellin 20-oxidase 3 | chr5:2243835-2245157 REVERSE LENGTH=380;; (*ITAG) Solyc12g013780.1.1 (e_value=5e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4584783-4587211 transcript_region:SL2.40ch12:4584783..4587211- go_terms:GO:0016491 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 ***- A9LY20_SELML); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00008891g0023.1 protein AED:0.16 eAED:0.15 QI:105|0.83|0.71|1|0.66|0.85|7|417|360; (*GB) gi|224114964|ref|XP_002316904.1| (e_value=1e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G53800.1 (e_value=8e-66) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21848180-21849935 FORWARD LENGTH=351;; (*ITAG) Solyc12g013790.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4588483-4591740 transcript_region:SL2.40ch12:4588483..4591740- functional_description:"Genomic DNA chromosome 5 P1 clone MGN6 (AHRD V1 *--- Q9FHZ6_ARATH)"; NbS00008891g0030.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|0.5|1|1|2|373|264; (*GB) gi|225461411|ref|XP_002282248.1| (e_value=4e-74) PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=2e-46) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=1e-44) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc12g013800.1.1 (e_value=3e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4593932-4596815 transcript_region:SL2.40ch12:4593932..4596815- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00025934g0002.1 protein AED:0.02 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|63|89; (*ITAG) Solyc01g097360.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:80019790-80020417 transcript_region:SL2.40ch01:80019790..80020417+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025934g0004.1 protein AED:0.06 eAED:0.06 QI:201|0.87|0.88|1|0.75|0.66|9|2723|331; (*GB) gi|122216326|sp|Q3L181.1|PERR_RAUSE (e_value=5e-172) RecName: Full=Perakine reductase;; (*SWP) sp|Q3L181|PERR_RAUSE (e_value=1e-173) Perakine reductase OS=Rauvolfia serpentina GN=PR PE=1 SV=1;; (*TAIR) AT1G60680.1 (e_value=1e-130) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22347824-22349236 REVERSE LENGTH=346;; (*ITAG) Solyc01g097390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80028719-80032895 transcript_region:SL2.40ch01:80028719..80032895+ go_terms:GO:0006468,GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0006468,GO:0055114 NbS00025934g0018.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|440; (*GB) gi|225451334|ref|XP_002274524.1| (e_value=0.0) PREDICTED: ammonium transporter 3 member 1 [Vitis vinifera];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=2e-154) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=5e-148) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc01g097370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80020656-80022438 transcript_region:SL2.40ch01:80020656..80022438- go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9I5F0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00025934g0008.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|591; (*GB) gi|255573210|ref|XP_002527534.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9XID3|Y1343_ARATH (e_value=2e-105) G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1;; (*TAIR) AT1G34300.1 (e_value=2e-106) | Symbols: | lectin protein kinase family protein | chr1:12503450-12505939 FORWARD LENGTH=829;; (*ITAG) Solyc03g005130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:84382-86742 transcript_region:SL2.40ch03:84382..86742+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- B6ST43_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00023333g0011.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0.5|1|0.33|0.5|4|110|335; (*GB) gi|357509995|ref|XP_003625286.1| (e_value=8e-139) Activator of 90 kDa heat shock protein ATPase-like protein [Medicago truncatula];; (*SWP) sp|O95433|AHSA1_HUMAN (e_value=5e-35) Activator of 90 kDa heat shock protein ATPase homolog 1 OS=Homo sapiens GN=AHSA1 PE=1 SV=1;; (*TAIR) AT3G12050.1 (e_value=4e-138) | Symbols: | Aha1 domain-containing protein | chr3:3839289-3841303 FORWARD LENGTH=360;; (*ITAG) Solyc10g078930.1.1 (e_value=3e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59896781-59900058 transcript_region:SL2.40ch10:59896781..59900058- go_terms:GO:0051087,GO:0001671 functional_description:"Activator of heat shock protein ATPase homolog 1 (AHRD V1 **-* D3PJW3_9MAXI); contains Interpro domain(s) IPR015310 Activator of Hsp90 ATPase, N-terminal "; GO:0051087,GO:0001671 NbS00023333g0002.1 protein AED:0.30 eAED:0.30 QI:170|1|0.83|1|0.8|0.66|6|0|170; (*GB) gi|225441487|ref|XP_002275794.1| (e_value=3e-83) PREDICTED: thioredoxin-like 3-1, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FG36|TRL31_ARATH (e_value=1e-70) Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3;; (*TAIR) AT5G06690.1 (e_value=8e-72) | Symbols: WCRKC1 | WCRKC thioredoxin 1 | chr5:2060651-2061956 REVERSE LENGTH=210;; (*ITAG) Solyc10g078920.1.1 (e_value=9e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59894275-59896223 transcript_region:SL2.40ch10:59894275..59896223+ go_terms:GO:0045454 functional_description:"Thioredoxin-like 5 (AHRD V1 ***- A6N1I7_ORYSI); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00018290g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|0|154; (*GB) gi|359494441|ref|XP_002264049.2| (e_value=4e-79) PREDICTED: LOB domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q9SHE9|LBD4_ARATH (e_value=2e-65) LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1;; (*TAIR) AT1G31320.1 (e_value=2e-66) | Symbols: LBD4 | LOB domain-containing protein 4 | chr1:11213107-11214032 FORWARD LENGTH=172;; (*ITAG) Solyc11g045530.1.1 (e_value=3e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:38110363-38113093 transcript_region:SL2.40ch11:38110363..38113093+ functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00018290g0009.1 protein AED:0.18 eAED:0.18 QI:176|0.57|0.25|1|0.71|0.75|8|0|738; (*GB) gi|224072246|ref|XP_002303671.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=9e-52) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=7e-53) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g008410.2.1 (e_value=3e-51) genomic_reference:SL2.40ch08 gene_region:2829724-2834799 transcript_region:SL2.40ch08:2829724..2834799+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER15_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00018290g0010.1 protein AED:0.50 eAED:0.54 QI:0|0|0|0.66|0|0.33|3|0|105 NbS00012014g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|356533511|ref|XP_003535307.1| (e_value=6e-18) PREDICTED: uncharacterized protein LOC100787526 [Glycine max];; (*ITAG) Solyc01g102420.1.1 (e_value=7e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83003378-83003704 transcript_region:SL2.40ch01:83003378..83003704+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056638g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|0.8|0.25|0.2|5|0|223; (*GB) gi|363814506|ref|NP_001242888.1| (e_value=3e-67) uncharacterized protein LOC100812797 [Glycine max];; (*SWP) sp|O95208|EPN2_HUMAN (e_value=7e-14) Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3;; (*TAIR) AT3G46540.1 (e_value=4e-55) | Symbols: | ENTH/VHS family protein | chr3:17134204-17135411 REVERSE LENGTH=307;; (*ITAG) Solyc01g110500.2.1 (e_value=3e-106) genomic_reference:SL2.40ch01 gene_region:88951518-88952931 transcript_region:SL2.40ch01:88951518..88952931+ go_terms:GO:0005488 functional_description:"Epsin 2-like protein (Fragment) (AHRD V1 *-*- D9HWY0_LAGLG); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00056638g0007.1 protein AED:0.15 eAED:0.15 QI:648|0.5|0.6|1|0.5|0.6|5|125|278; (*GB) gi|297823609|ref|XP_002879687.1| (e_value=2e-164) hypothetical protein ARALYDRAFT_321465 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q05214|ACT1_TOBAC (e_value=8e-143) Actin OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G46520.1 (e_value=2e-142) | Symbols: ACT12 | actin-12 | chr3:17128567-17129981 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=5e-144) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00014713g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|225430575|ref|XP_002263122.1| (e_value=5e-39) PREDICTED: uncharacterized protein LOC100263835 [Vitis vinifera];; (*TAIR) AT4G25760.1 (e_value=9e-26) | Symbols: ATGDU2, GDU2 | glutamine dumper 2 | chr4:13116149-13116538 FORWARD LENGTH=129;; (*ITAG) Solyc12g096480.1.1 (e_value=2e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:63723254-63723712 transcript_region:SL2.40ch12:63723254..63723712- functional_description:"GDU1 (AHRD V1 ***- B6TY22_MAIZE)"; NbS00032078g0010.1 protein AED:0.21 eAED:0.23 QI:0|0.62|0.44|1|0.75|0.66|9|552|675; (*GB) gi|53689729|gb|AAU89743.1| (e_value=3e-147) At3g17900/MEB5_12-like protein [Solanum tuberosum];; (*TAIR) AT3G17900.1 (e_value=1e-109) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:6128983-6133069 FORWARD LENGTH=838;; (*ITAG) Solyc05g007030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1617323-1626373 transcript_region:SL2.40ch05:1617323..1626373+ functional_description:"AT3g17900/MEB5_12 (AHRD V1 ***- Q9ASZ4_ARATH)"; NbS00032078g0002.1 protein AED:0.62 eAED:0.64 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|53689730|gb|AAU89744.1| (e_value=4e-13) At3g17900/MEB5_12-like protein [Solanum tuberosum];; (*ITAG) Solyc05g007030.2.1 (e_value=5e-17) genomic_reference:SL2.40ch05 gene_region:1617323-1626373 transcript_region:SL2.40ch05:1617323..1626373+ functional_description:"AT3g17900/MEB5_12 (AHRD V1 ***- Q9ASZ4_ARATH)"; NbS00015495g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|95; (*ITAG) Solyc01g098280.2.1 (e_value=7e-17) genomic_reference:SL2.40ch01 gene_region:80619012-80620301 transcript_region:SL2.40ch01:80619012..80620301+ functional_description:"Heat shock protein DnaJ (AHRD V1 *-*- A2Q3G0_MEDTR)"; NbS00015495g0012.1 protein AED:0.06 eAED:0.06 QI:144|1|0.88|1|0.75|0.66|9|676|454; (*GB) gi|302143552|emb|CBI22113.3| (e_value=2e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWV3|CCL11_ARATH (e_value=8e-158) Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2;; (*TAIR) AT2G26430.1 (e_value=6e-159) | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | chr2:11243433-11245504 REVERSE LENGTH=416;; (*ITAG) Solyc01g098350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80653654-80657672 transcript_region:SL2.40ch01:80653654..80657672- go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase (AHRD V1 *-** B6SH69_MAIZE); contains Interpro domain(s) IPR017060 Cyclin L "; GO:0016538 NbS00015495g0014.1 protein AED:0.22 eAED:0.22 QI:28|1|1|1|0.83|0.85|7|371|264; (*GB) gi|225434245|ref|XP_002280402.1| (e_value=2e-159) PREDICTED: dihydrodipicolinate reductase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O80574|DAPB1_ARATH (e_value=9e-161) Dihydrodipicolinate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=DAPB1 PE=2 SV=2;; (*TAIR) AT2G44040.1 (e_value=7e-162) | Symbols: | Dihydrodipicolinate reductase, bacterial/plant | chr2:18221985-18223998 REVERSE LENGTH=347;; (*ITAG) Solyc01g098380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80665607-80671287 transcript_region:SL2.40ch01:80665607..80671287- go_terms:GO:0008839 functional_description:"Dihydrodipicolinate reductase family protein (AHRD V1 **** D7LKV2_ARALY); contains Interpro domain(s) IPR011859 Dihydrodipicolinate reductase, plant "; GO:0008839 NbS00015495g0013.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|0.5|2|0|444; (*GB) gi|296082718|emb|CBI21723.3| (e_value=1e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=7e-51) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G25020.1 (e_value=3e-64) | Symbols: AtRLP42, RLP42 | receptor like protein 42 | chr3:9116868-9119540 REVERSE LENGTH=890;; (*ITAG) Solyc01g098370.1.1 (e_value=9e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80660540-80663353 transcript_region:SL2.40ch01:80660540..80663353- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00015495g0015.1 protein AED:0.24 eAED:0.30 QI:0|0|0|0.75|0|0|4|0|321; (*GB) gi|356546484|ref|XP_003541656.1| (e_value=7e-32) PREDICTED: uncharacterized protein LOC100779228 [Glycine max];; (*TAIR) AT5G18750.1 (e_value=7e-23) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:6255177-6257831 FORWARD LENGTH=884;; (*ITAG) Solyc01g098310.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80635307-80639639 transcript_region:SL2.40ch01:80635307..80639639+ functional_description:"DNAJ heat shock N-terminal domain-containing protein (Fragment) (AHRD V1 *-*- D7L312_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; NbS00015495g0017.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|180; (*GB) gi|357493411|ref|XP_003616994.1| (e_value=2e-42) Receptor-like protein kinase [Medicago truncatula];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-15) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT1G45616.1 (e_value=4e-30) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc01g098370.1.1 (e_value=6e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80660540-80663353 transcript_region:SL2.40ch01:80660540..80663353- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00013289g0003.1 protein AED:0.37 eAED:0.37 QI:185|1|1|1|0.5|0.66|3|74|169; (*GB) gi|296084542|emb|CBI25563.3| (e_value=1e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g009860.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3039924-3042224 transcript_region:SL2.40ch12:3039924..3042224- functional_description:"Unknown Protein (AHRD V1)"; NbS00013289g0002.1 protein AED:0.24 eAED:0.36 QI:0|0|0|1|1|1|2|0|83; (*ITAG) Solyc12g009850.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3038815-3039159 transcript_region:SL2.40ch12:3038815..3039159+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040482g0001.1 protein AED:0.02 eAED:0.02 QI:76|0.5|0.66|1|0|0|3|109|87 NbS00033478g0003.1 protein AED:0.20 eAED:0.27 QI:0|0|0|0.66|0.5|0.66|3|0|114; (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-18) Putative polyprotein, identical [Solanum demissum];; (*ITAG) Solyc00g121730.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:16494360-16496275 transcript_region:SL2.40ch00:16494360..16496275- go_terms:GO:0006508 functional_description:"&aposchromo&apos domain containing protein (AHRD V1 *--- Q6L3Q3_SOLDE); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; GO:0006508 NbS00018966g0003.1 protein AED:0.01 eAED:0.01 QI:673|1|1|1|0.5|0.66|3|426|228; (*GB) gi|225449738|ref|XP_002270953.1| (e_value=4e-88) PREDICTED: RING-H2 finger protein ATL38 [Vitis vinifera];; (*SWP) sp|Q9M0R5|ATL36_ARATH (e_value=4e-16) Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana GN=ATL36 PE=3 SV=1;; (*TAIR) AT4G09120.1 (e_value=3e-17) | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035 FORWARD LENGTH=345;; (*ITAG) Solyc11g007530.1.1 (e_value=3e-127) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1787389-1790741 transcript_region:SL2.40ch11:1787389..1790741+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00061149g0001.1 protein AED:0.08 eAED:0.11 QI:0|0.75|0.6|1|1|1|5|0|387; (*GB) gi|225435086|ref|XP_002281446.1| (e_value=0.0) PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic [Vitis vinifera];; (*SWP) sp|P47924|RIBBA_ARATH (e_value=2e-135) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G59750.1 (e_value=0.0) | Symbols: | DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=509;; (*ITAG) Solyc11g073160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53309247-53311991 transcript_region:SL2.40ch11:53309247..53311991+ go_terms:GO:0009231 functional_description:"GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 **-- Q6A4W9_MALDO); contains Interpro domain(s) IPR016299 Riboflavin biosynthesis protein RibA "; GO:0009231 NbS00003294g0011.1 protein AED:0.01 eAED:0.01 QI:102|1|1|1|0|0.5|2|200|327; (*GB) gi|225439317|ref|XP_002268704.1| (e_value=2e-163) PREDICTED: probable carboxylesterase 15 [Vitis vinifera];; (*SWP) sp|Q9FG13|CXE15_ARATH (e_value=2e-116) Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1;; (*TAIR) AT5G06570.2 (e_value=2e-117) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329;; (*ITAG) Solyc11g071720.1.1 (e_value=3e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52207795-52209357 transcript_region:SL2.40ch11:52207795..52209357+ go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOSM); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00003294g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.94|0.83|1|0.70|0.77|18|217|583; (*GB) gi|356505459|ref|XP_003521508.1| (e_value=0.0) PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial-like [Glycine max];; (*SWP) sp|Q94AX4|DLD_ARATH (e_value=0.0) D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1;; (*TAIR) AT5G06580.1 (e_value=0.0) | Symbols: | FAD-linked oxidases family protein | chr5:2011486-2016473 REVERSE LENGTH=567;; (*ITAG) Solyc11g045370.1.1 (e_value=1e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37698878-37711539 transcript_region:SL2.40ch11:37698878..37711539+ go_terms:GO:0050660 functional_description:"D-lactate dehydrogenase (AHRD V1 **-- B6K538_SCHJY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00020311g0003.1 protein AED:0.00 eAED:0.00 QI:263|1|0.33|1|1|1|3|232|74; (*GB) gi|2497902|sp|Q40410.1|MT2_NICPL (e_value=4e-14) RecName: Full=Metallothionein-like protein type 2;; (*SWP) sp|Q40410|MT2_NICPL (e_value=1e-15) Metallothionein-like protein type 2 OS=Nicotiana plumbaginifolia PE=3 SV=1;; (*ITAG) Solyc06g076140.2.1 (e_value=7e-15) genomic_reference:SL2.40ch06 gene_region:43665663-43666838 transcript_region:SL2.40ch06:43665663..43666838+ go_terms:GO:0005507 functional_description:"Metallothionein-like protein (AHRD V1 ***- A9YTZ3_SOLTU); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0005507 NbS00008518g0002.1 protein AED:0.16 eAED:0.18 QI:160|0|0.5|1|0|0.5|2|0|188; (*GB) gi|255637487|gb|ACU19070.1| (e_value=4e-29) unknown [Glycine max];; (*SWP) sp|Q93Z27|CML45_ARATH (e_value=1e-26) Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1;; (*TAIR) AT5G39670.1 (e_value=8e-28) | Symbols: | Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204;; (*ITAG) Solyc02g088090.1.1 (e_value=4e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44857193-44857738 transcript_region:SL2.40ch02:44857193..44857738+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00008518g0008.1 protein AED:0.02 eAED:0.02 QI:73|1|1|1|0.66|0.5|4|467|240; (*GB) gi|350538399|ref|NP_001234085.1| (e_value=2e-134) expansin precursor [Solanum lycopersicum];; (*SWP) sp|O80622|EXP15_ARATH (e_value=4e-112) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=3e-113) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc02g088100.2.1 (e_value=4e-137) genomic_reference:SL2.40ch02 gene_region:44867449-44868915 transcript_region:SL2.40ch02:44867449..44868915- go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- Q9ZP31_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005199 NbS00042298g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|3|0|156; (*GB) gi|78191446|gb|ABB29944.1| (e_value=2e-92) GTPase-like [Solanum tuberosum];; (*SWP) sp|P52884|SAR2_SOLLC (e_value=9e-94) GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1;; (*TAIR) AT3G62560.1 (e_value=3e-90) | Symbols: | Ras-related small GTP-binding family protein | chr3:23137539-23138880 FORWARD LENGTH=193;; (*ITAG) Solyc01g060130.2.1 (e_value=6e-95) genomic_reference:SL2.40ch01 gene_region:62492587-62494651 transcript_region:SL2.40ch01:62492587..62494651+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0005525,GO:0005622 NbS00050765g0003.1 protein AED:0.44 eAED:0.44 QI:0|0.14|0.12|0.25|1|1|8|0|271; (*GB) gi|270267863|gb|ACZ65511.1| (e_value=1e-105) Tap46 [Nicotiana benthamiana];; (*SWP) sp|Q8LDQ4|TAP46_ARATH (e_value=2e-72) PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2;; (*TAIR) AT5G53000.1 (e_value=1e-73) | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405;; (*ITAG) Solyc01g006110.2.1 (e_value=5e-84) genomic_reference:SL2.40ch01 gene_region:766543-772337 transcript_region:SL2.40ch01:766543..772337- go_terms:GO:0008601 functional_description:"PP2A regulatory subunit TAP46 (AHRD V1 **-- B6TVR5_MAIZE); contains Interpro domain(s) IPR007304 TAP42-like protein "; GO:0008601 NbS00005538g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.14|1|0.5|0.42|7|0|841; (*GB) gi|357444799|ref|XP_003592677.1| (e_value=0.0) mscS family protein, putative [Medicago truncatula];; (*SWP) sp|F4IME2|MSL8_ARATH (e_value=0.0) Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2;; (*TAIR) AT2G17000.1 (e_value=0.0) | Symbols: | Mechanosensitive ion channel family protein | chr2:7388893-7392105 REVERSE LENGTH=849;; (*ITAG) Solyc04g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63439571-63444065 transcript_region:SL2.40ch04:63439571..63444065+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 *-*- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00005538g0201.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|378 NbS00016322g0005.1 protein AED:0.17 eAED:0.17 QI:261|0.88|0.88|1|0.65|0.66|27|409|967; (*GB) gi|359492582|ref|XP_002282968.2| (e_value=0.0) PREDICTED: chromosome-associated kinesin KIF4A-like [Vitis vinifera];; (*SWP) sp|Q9QXL1|KI21B_MOUSE (e_value=4e-95) Kinesin-like protein KIF21B OS=Mus musculus GN=Kif21b PE=1 SV=2;; (*TAIR) AT5G47820.2 (e_value=0.0) | Symbols: FRA1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:19366505-19372229 FORWARD LENGTH=1035;; (*ITAG) Solyc04g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60877592-60888302 transcript_region:SL2.40ch04:60877592..60888302- go_terms:GO:0008574,GO:0008017 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8GS71_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0008017 NbS00033362g0008.1 protein AED:0.18 eAED:0.18 QI:17|0.66|0.75|1|0.66|0.75|4|0|97; (*ITAG) Solyc06g071580.2.1 (e_value=9e-23) genomic_reference:SL2.40ch06 gene_region:40458951-40471817 transcript_region:SL2.40ch06:40458951..40471817+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00033362g0012.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0|0.66|1|1|3|0|86; (*GB) gi|225456973|ref|XP_002278685.1| (e_value=2e-18) PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera];; (*TAIR) AT1G19100.1 (e_value=3e-18) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663;; (*ITAG) Solyc01g099300.2.1 (e_value=8e-22) genomic_reference:SL2.40ch01 gene_region:81337554-81359465 transcript_region:SL2.40ch01:81337554..81359465- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00033362g0007.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|2|0|475; (*GB) gi|297736405|emb|CBI25128.3| (e_value=1e-67) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZUB8|SKI22_ARATH (e_value=6e-42) F-box protein SKIP22 OS=Arabidopsis thaliana GN=SKIP22 PE=1 SV=1;; (*TAIR) AT1G23780.1 (e_value=4e-43) | Symbols: | F-box family protein | chr1:8407053-8408480 REVERSE LENGTH=475;; (*ITAG) Solyc01g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1556952-1559079 transcript_region:SL2.40ch01:1556952..1559079- go_terms:GO:0003779 functional_description:"F-box family protein (AHRD V1 ***- D7KNJ0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0003779 NbS00049224g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|0|0|3|0|143; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-45) hypothetical protein [Nicotiana tabacum]; NbS00049224g0003.1 protein AED:0.64 eAED:0.65 QI:0|0|0|0.5|0|0|2|0|112; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-19) hypothetical protein [Nicotiana tabacum]; NbS00043391g0010.1 protein AED:0.34 eAED:0.34 QI:297|1|1|1|0.14|0.25|8|801|175; (*GB) gi|388521485|gb|AFK48804.1| (e_value=6e-78) unknown [Lotus japonicus];; (*SWP) sp|Q2QMB3|LOL2_ORYSJ (e_value=2e-57) Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1;; (*TAIR) AT4G20380.7 (e_value=2e-55) | Symbols: LSD1 | LSD1 zinc finger family protein | chr4:11005012-11006438 FORWARD LENGTH=189;; (*ITAG) Solyc02g069720.2.1 (e_value=6e-84) genomic_reference:SL2.40ch02 gene_region:34117564-34122011 transcript_region:SL2.40ch02:34117564..34122011+ go_terms:GO:0003700 functional_description:"Zinc finger protein LSD1 (AHRD V1 **-- Q8W195_BRAOL); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; GO:0003700 NbS00024532g0006.1 protein AED:0.02 eAED:0.02 QI:155|1|0.81|1|1|1|11|257|1110; (*GB) gi|225466033|ref|XP_002267656.1| (e_value=0.0) PREDICTED: condensin complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q9YHB5|CND3_XENLA (e_value=2e-35) Condensin complex subunit 3 OS=Xenopus laevis GN=ncapg PE=1 SV=1;; (*TAIR) AT5G37630.1 (e_value=0.0) | Symbols: EMB2656 | ARM repeat superfamily protein | chr5:14947407-14952546 FORWARD LENGTH=1051;; (*ITAG) Solyc11g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4411251-4419803 transcript_region:SL2.40ch11:4411251..4419803- go_terms:GO:0005488 functional_description:"Condensin complex subunit 3 (AHRD V1 *-*- C0H9G7_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00060984g0001.1 protein AED:0.24 eAED:1.00 QI:0|0|0|1|0|0|2|0|79 NbS00030584g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|2|0|457; (*GB) gi|342306012|dbj|BAK55742.1| (e_value=6e-116) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-91) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT1G10400.1 (e_value=4e-27) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:3414869-3416358 REVERSE LENGTH=467;; (*ITAG) Solyc11g066680.1.1 (e_value=8e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49531533-49532927 transcript_region:SL2.40ch11:49531533..49532927+ go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *--- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00030584g0002.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.5|1|1|1|4|0|459; (*GB) gi|224096000|ref|XP_002310517.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=5e-108) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G33440.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:16092020-16094732 FORWARD LENGTH=475;; (*ITAG) Solyc06g060170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34519332-34525209 transcript_region:SL2.40ch06:34519332..34525209- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00011678g0004.1 protein AED:0.28 eAED:0.30 QI:48|1|0.84|1|0.91|0.84|13|483|663; (*GB) gi|124484391|dbj|BAF46306.1| (e_value=0.0) ataxin-2 related protein [Ipomoea nil];; (*SWP) sp|Q55DE7|ATX2_DICDI (e_value=1e-23) Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1;; (*TAIR) AT3G14010.3 (e_value=1e-117) | Symbols: CID4 | CTC-interacting domain 4 | chr3:4637164-4640691 FORWARD LENGTH=595;; (*ITAG) Solyc03g121950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63997165-64006343 transcript_region:SL2.40ch03:63997165..64006343- functional_description:"Ataxin-2 (AHRD V1 *--- D3BPE8_POLPA); contains Interpro domain(s) IPR009604 LsmAD domain "; NbS00017949g0009.1 protein AED:0.29 eAED:0.29 QI:81|1|1|1|0.66|0.75|4|419|386; (*GB) gi|78191448|gb|ABB29945.1| (e_value=0.0) ADP/ATP translocator-like [Solanum tuberosum];; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbC25495366g0001.1 protein AED:0.36 eAED:0.36 QI:0|1|0.5|1|0|0|2|357|84 NbS00050916g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|255564290|ref|XP_002523142.1| (e_value=0.0) Protein COBRA precursor, putative [Ricinus communis];; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0.0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2;; (*TAIR) AT4G16120.1 (e_value=0.0) | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661;; (*ITAG) Solyc09g075540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62731615-62733737 transcript_region:SL2.40ch09:62731615..62733737- go_terms:GO:0030246 functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; GO:0030246 NbS00013488g0001.1 protein AED:0.25 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc04g051170.1.1 (e_value=3e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49010145-49011402 transcript_region:SL2.40ch04:49010145..49011402- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00013488g0025.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|142; (*ITAG) Solyc04g058060.1.1 (e_value=7e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54322327-54325742 transcript_region:SL2.40ch04:54322327..54325742+ go_terms:GO:0005515 functional_description:"30S ribosomal protein S8P (AHRD V1 *-*- RS8_KORCO); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00013488g0010.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|182; (*GB) gi|13449294|ref|NP_085477.1| (e_value=8e-17) hypothetical protein ArthMp005 [Arabidopsis thaliana];; (*SWP) sp|P93277|M050_ARATH (e_value=2e-18) Uncharacterized mitochondrial protein AtMg00050 OS=Arabidopsis thaliana GN=AtMg00050 PE=4 SV=1;; (*ITAG) ATMG00050.1 (e_value=2e-19) | Symbols: ORF131 | hypothetical protein | chrM:16856-17251 FORWARD LENGTH=131;; (*ITAG) Solyc01g065790.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013488g0031.1 protein AED:0.08 eAED:0.15 QI:0|0|0|0.66|0.5|0.33|3|0|335; (*GB) gi|357436137|ref|XP_003588344.1| (e_value=7e-111) Ribosomal protein L5 [Medicago truncatula];; (*SWP) sp|P51409|RM05_SOLTU (e_value=4e-101) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=4e-90) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=3e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00013488g0023.1 protein AED:0.33 eAED:0.33 QI:0|1|0|1|1|1|2|0|118; (*ITAG) Solyc10g049530.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00013488g0028.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|0|0|2|0|156; (*GB) gi|57013892|ref|YP_173366.1| (e_value=1e-13) apocytochrome b [Nicotiana tabacum];; (*SWP) sp|P05718|CYB_VICFA (e_value=1e-13) Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2;; (*ITAG) ATMG00220.1 (e_value=9e-16) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc11g056490.1.1 (e_value=7e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43166799-43167032 transcript_region:SL2.40ch11:43166799..43167032- go_terms:GO:0016020 functional_description:"Cytochrome b (AHRD V1 ***- Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0016020 NbS00013488g0029.1 protein AED:0.23 eAED:0.36 QI:0|0|0|1|0|0|3|0|125; (*GB) gi|4106831|gb|AAD03035.1| (e_value=5e-69) apocytochrome b [Solanum tuberosum];; (*SWP) sp|P05718|CYB_VICFA (e_value=1e-65) Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2;; (*ITAG) ATMG00220.1 (e_value=3e-66) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00013488g0032.1 protein AED:0.24 eAED:0.33 QI:0|0|0|1|0|0|2|0|123; (*GB) gi|377829875|ref|YP_005296100.1| (e_value=3e-25) psaA gene product (chloroplast) [Pentactina rupicola];; (*SWP) sp|Q09MH8|PSAA_CITSI (e_value=1e-26) Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=6e-27) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc02g020960.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:11444690-11446165 transcript_region:SL2.40ch02:11444690..11446165- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D5MAH7_PEA); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00013488g0026.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|7514666|pir||T14570 (e_value=8e-35) cytochrome b559 component psbE - beet chloroplast;; (*SWP) sp|Q3V518|PSBE_ACOCL (e_value=6e-36) Cytochrome b559 subunit alpha OS=Acorus calamus GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=7e-37) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00013488g0027.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|61; (*ITAG) Solyc12g036610.1.1 (e_value=9e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31776111-31776305 transcript_region:SL2.40ch12:31776111..31776305- functional_description:"Unknown Protein (AHRD V1)"; NbS00059246g0004.1 protein AED:0.31 eAED:0.31 QI:384|0.8|0.72|1|0.6|0.81|11|0|314; (*GB) gi|82621136|gb|ABB86256.1| (e_value=2e-131) eukaryotic translation initiation factor 2 beta subunit-like [Solanum tuberosum];; (*SWP) sp|P55871|IF2B_MALDO (e_value=1e-100) Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2;; (*TAIR) AT5G20920.3 (e_value=2e-97) | Symbols: EIF2 BETA | eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=268;; (*ITAG) Solyc06g082580.2.1 (e_value=3e-134) genomic_reference:SL2.40ch06 gene_region:44640508-44646549 transcript_region:SL2.40ch06:44640508..44646549- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 beta subunit-like (AHRD V1 **** Q2V9B2_SOLTU); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0005515,GO:0003743 NbS00041616g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|357528936|gb|AET80688.1| (e_value=0.0) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=4e-121) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=9e-47) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc11g071470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52013683-52015014 transcript_region:SL2.40ch11:52013683..52015014+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00056402g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|255562669|ref|XP_002522340.1| (e_value=5e-70) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9LSL6|DOF57_ARATH (e_value=2e-30) Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1;; (*TAIR) AT5G65590.1 (e_value=2e-31) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26212084-26213034 REVERSE LENGTH=316;; (*ITAG) Solyc02g090310.1.1 (e_value=1e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46465985-46466767 transcript_region:SL2.40ch02:46465985..46466767- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 4 (AHRD V1 *-*- A5HWF3_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00014138g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|109; (*GB) gi|224053583|ref|XP_002297884.1| (e_value=3e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=1e-27) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2;; (*TAIR) AT3G61110.1 (e_value=1e-28) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86;; (*ITAG) Solyc01g008090.2.1 (e_value=7e-28) genomic_reference:SL2.40ch01 gene_region:2223864-2226034 transcript_region:SL2.40ch01:2223864..2226034- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- Q3HVK9_SOLTU); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00009073g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|355; (*GB) gi|225456596|ref|XP_002266065.1| (e_value=1e-60) PREDICTED: uncharacterized protein LOC100251925 [Vitis vinifera];; (*TAIR) AT1G74830.1 (e_value=3e-45) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc06g071190.2.1 (e_value=1e-176) genomic_reference:SL2.40ch06 gene_region:40162763-40166109 transcript_region:SL2.40ch06:40162763..40166109+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00009073g0007.1 protein AED:0.11 eAED:0.11 QI:262|0.96|0.96|1|0.69|0.85|27|387|951; (*GB) gi|225457174|ref|XP_002283854.1| (e_value=0.0) PREDICTED: transportin-3 [Vitis vinifera];; (*SWP) sp|Q6P2B1|TNPO3_MOUSE (e_value=2e-72) Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1;; (*TAIR) AT5G62600.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:25123337-25132473 REVERSE LENGTH=958;; (*ITAG) Solyc06g071200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40166799-40194265 transcript_region:SL2.40ch06:40166799..40194265+ go_terms:GO:0006886,GO:0005488 functional_description:"Importin 13 (AHRD V1 **-- B1ASJ5_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00008135g0009.1 protein AED:0.27 eAED:0.27 QI:138|1|1|1|1|1|14|314|605; (*GB) gi|48209883|gb|AAT40489.1| (e_value=0.0) putative sucrose transporter-like protein [Solanum demissum];; (*SWP) sp|O80605|SUC3_ARATH (e_value=0.0) Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1;; (*TAIR) AT2G02860.1 (e_value=0.0) | Symbols: SUT2, ATSUC3, SUC3, ATSUT2 | sucrose transporter 2 | chr2:828546-832296 REVERSE LENGTH=594;; (*ITAG) Solyc05g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1804154-1810447 transcript_region:SL2.40ch05:1804154..1810447- go_terms:GO:0008506 functional_description:"Sucrose transporter-like protein (AHRD V1 **** Q9FVL6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00008135g0011.1 protein AED:0.36 eAED:0.37 QI:16|0.75|0.4|1|0.75|0.6|5|0|263; (*GB) gi|48209876|gb|AAT40482.1| (e_value=2e-140) hypothetical protein [Solanum demissum];; (*SWP) sp|P87216|VIPI_SCHPO (e_value=6e-14) Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1;; (*TAIR) AT1G14340.1 (e_value=3e-75) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc05g007200.2.1 (e_value=7e-141) genomic_reference:SL2.40ch05 gene_region:1811040-1816032 transcript_region:SL2.40ch05:1811040..1816032- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00008135g0013.1 protein AED:0.09 eAED:0.09 QI:753|0.83|0.85|1|0.16|0.42|7|610|147; (*GB) gi|224139288|ref|XP_002323038.1| (e_value=6e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|P87172|GPI3_SCHPO (e_value=9e-48) Phosphatidylinositol N-acetylglucosaminyltransferase gpi3 subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi3 PE=2 SV=1;; (*TAIR) AT3G45100.2 (e_value=3e-71) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00020490g0006.1 protein AED:0.13 eAED:0.13 QI:127|0.5|0.33|1|0.5|0.66|3|0|242; (*GB) gi|359472832|ref|XP_002263089.2| (e_value=1e-91) PREDICTED: uncharacterized protein LOC100254361 [Vitis vinifera];; (*TAIR) AT1G69080.1 (e_value=7e-52) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:25972132-25973243 REVERSE LENGTH=223;; (*ITAG) Solyc05g012000.2.1 (e_value=1e-98) genomic_reference:SL2.40ch05 gene_region:5206381-5207806 transcript_region:SL2.40ch05:5206381..5207806- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KWY1_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00020490g0009.1 protein AED:0.19 eAED:0.19 QI:143|0.85|0.8|1|0.78|0.8|15|185|968; (*GB) gi|297738122|emb|CBI27323.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R3N1|NOP14_MOUSE (e_value=3e-30) Nucleolar protein 14 OS=Mus musculus GN=Nop14 PE=1 SV=2;; (*TAIR) AT1G69070.1 (e_value=7e-137) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | chr1:25967421-25971389 REVERSE LENGTH=901;; (*ITAG) Solyc05g011990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5194960-5203690 transcript_region:SL2.40ch05:5194960..5203690- go_terms:GO:0030515,GO:0005515 functional_description:"Nucleolar protein 14 (AHRD V1 *--- A8NZ00_COPC7); contains Interpro domain(s) IPR007276 Nop14-like protein "; GO:0030515,GO:0005515 NbS00023063g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.42|1|0|0.28|7|111|411; (*GB) gi|350539543|ref|NP_001233924.1| (e_value=0.0) LAX5 protein [Solanum lycopersicum];; (*SWP) sp|Q9S836|LAX2_ARATH (e_value=0.0) Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G21050.1 (e_value=0.0) | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483;; (*ITAG) Solyc10g055260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51998467-52003224 transcript_region:SL2.40ch10:51998467..52003224- functional_description:"Auxin transporter-like protein 3 (AHRD V1 ***- B6TPT6_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00023063g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|121631|sp|P27484.1|GRP2_NICSY (e_value=6e-31) RecName: Full=Glycine-rich protein 2;; (*SWP) sp|P27484|GRP2_NICSY (e_value=2e-32) Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1;; (*TAIR) AT4G38680.1 (e_value=1e-25) | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | glycine rich protein 2 | chr4:18072240-18072851 REVERSE LENGTH=203;; (*ITAG) Solyc10g055250.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51991131-51991640 transcript_region:SL2.40ch10:51991131..51991640- go_terms:GO:0003676,GO:0008270,GO:0006355 functional_description:"Cold shock protein-1 (AHRD V1 *-*- Q8LPA7_WHEAT); contains Interpro domain(s) IPR002059 Cold-shock protein, DNA-binding "; GO:0003676,GO:0008270,GO:0006355 NbS00023063g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|318; (*GB) gi|255574752|ref|XP_002528284.1| (e_value=0.0) phospholipase C, putative [Ricinus communis];; (*SWP) sp|P34024|PLC_LISMO (e_value=1e-14) 1-phosphatidylinositol phosphodiesterase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=plcA PE=1 SV=1;; (*TAIR) AT4G38690.1 (e_value=0.0) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:18074743-18075699 REVERSE LENGTH=318;; (*ITAG) Solyc10g055240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51981743-51982778 transcript_region:SL2.40ch10:51981743..51982778+ go_terms:GO:0023034,GO:0006629 functional_description:"Phosphatidylinositol-specific phospholipase c (AHRD V1 *-*- B9UY71_LISMO); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00029014g0005.1 protein AED:0.14 eAED:0.15 QI:0|0.33|0|1|0.33|0.5|4|0|230; (*GB) gi|224106826|ref|XP_002314298.1| (e_value=6e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60800.1 (e_value=6e-15) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc11g069060.1.1 (e_value=9e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50736550-50737782 transcript_region:SL2.40ch11:50736550..50737782+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein (AHRD V1 ***- D7LIF5_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00029014g0008.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|0.5|0.33|3|0|339; (*GB) gi|357488493|ref|XP_003614534.1| (e_value=9e-98) Cyclin-L1-1 [Medicago truncatula];; (*SWP) sp|Q8RWV3|CCL11_ARATH (e_value=2e-89) Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2;; (*TAIR) AT2G26430.1 (e_value=1e-90) | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | chr2:11243433-11245504 REVERSE LENGTH=416;; (*ITAG) Solyc01g098350.2.1 (e_value=4e-76) genomic_reference:SL2.40ch01 gene_region:80653654-80657672 transcript_region:SL2.40ch01:80653654..80657672- go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase (AHRD V1 *-** B6SH69_MAIZE); contains Interpro domain(s) IPR017060 Cyclin L "; GO:0016538 NbS00017222g0017.1 protein AED:0.07 eAED:0.07 QI:314|0.66|0.57|1|0.16|0.14|7|435|963; (*GB) gi|255559969|ref|XP_002521003.1| (e_value=7e-93) hypothetical protein RCOM_0992860 [Ricinus communis];; (*TAIR) AT2G30690.1 (e_value=2e-42) | Symbols: | Protein of unknown function, DUF593 | chr2:13076229-13078595 FORWARD LENGTH=760;; (*ITAG) Solyc09g066140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60142355-60146400 transcript_region:SL2.40ch09:60142355..60146400+ go_terms:GO:0030001 functional_description:"IFA binding protein (AHRD V1 *--- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; GO:0030001 NbS00017222g0002.1 protein AED:0.17 eAED:0.17 QI:228|1|1|1|0.8|0.66|6|471|488; (*GB) gi|255559963|ref|XP_002521000.1| (e_value=0.0) ribokinase, putative [Ricinus communis];; (*TAIR) AT1G06730.1 (e_value=0.0) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:2067633-2070049 FORWARD LENGTH=488;; (*ITAG) Solyc09g066130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60127667-60134094 transcript_region:SL2.40ch09:60127667..60134094- go_terms:GO:0016301 functional_description:"Ribokinase Carbohydrate kinase PfkB (AHRD V1 *--* Q2YIR7_BRUA2); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00017222g0016.1 protein AED:0.27 eAED:0.27 QI:66|0.83|0.85|1|0.83|0.71|7|476|576; (*GB) gi|356572245|ref|XP_003554280.1| (e_value=1e-166) PREDICTED: KH domain-containing protein At4g18375-like [Glycine max];; (*SWP) sp|P58223|Y4837_ARATH (e_value=4e-18) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT3G04610.1 (e_value=5e-133) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc09g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60118119-60126053 transcript_region:SL2.40ch09:60118119..60126053+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00044780g0003.1 protein AED:0.27 eAED:0.27 QI:14|1|1|1|1|1|2|416|299; (*GB) gi|225445832|ref|XP_002277519.1| (e_value=3e-119) PREDICTED: F-box protein SKIP1 [Vitis vinifera];; (*SWP) sp|Q9FDX1|SKIP1_ARATH (e_value=2e-99) F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1;; (*TAIR) AT5G57900.1 (e_value=2e-100) | Symbols: SKIP1 | SKP1 interacting partner 1 | chr5:23449916-23450915 REVERSE LENGTH=300;; (*ITAG) Solyc07g005750.2.1 (e_value=4e-150) genomic_reference:SL2.40ch07 gene_region:602113-605194 transcript_region:SL2.40ch07:602113..605194+ go_terms:GO:0005515 functional_description:"F-box/LRR-repeat protein 17 (AHRD V1 ***- FXL17_HUMAN); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00021011g0008.1 protein AED:0.09 eAED:0.09 QI:60|1|0.8|1|1|1|5|789|267; (*GB) gi|388506850|gb|AFK41491.1| (e_value=7e-91) unknown [Lotus japonicus];; (*SWP) sp|Q8GW78|CLP41_ARATH (e_value=3e-79) Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1;; (*TAIR) AT4G12060.1 (e_value=2e-80) | Symbols: | Double Clp-N motif protein | chr4:7228269-7229898 REVERSE LENGTH=241;; (*ITAG) Solyc08g079660.2.1 (e_value=2e-121) genomic_reference:SL2.40ch08 gene_region:60314725-60318209 transcript_region:SL2.40ch08:60314725..60318209- go_terms:GO:0019538 functional_description:"ATP-dependent Clp protease ATP-binding subunit ClpC (AHRD V1 *-*- D5A5L7_SPIPL); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00021011g0001.1 protein AED:0.11 eAED:0.11 QI:395|0.71|0.62|1|1|1|8|0|478; (*GB) gi|255537131|ref|XP_002509632.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G12420.1 (e_value=0.0) | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226673-4228917 REVERSE LENGTH=441;; (*ITAG) Solyc08g079650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60298413-60301319 transcript_region:SL2.40ch08:60298413..60301319- go_terms:GO:0008152 functional_description:"ACT domain containing protein expressed (AHRD V1 **-- Q10P43_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00021011g0009.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0.2|1|0.25|0.2|5|671|302; (*GB) gi|356513717|ref|XP_003525557.1| (e_value=4e-96) PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max];; (*TAIR) AT4G22850.1 (e_value=1e-81) | Symbols: | SNARE associated Golgi protein family | chr4:11994194-11995941 FORWARD LENGTH=296;; (*ITAG) Solyc08g079670.2.1 (e_value=1e-128) genomic_reference:SL2.40ch08 gene_region:60319033-60323467 transcript_region:SL2.40ch08:60319033..60323467- functional_description:"SNARE associated Golgi protein (AHRD V1 *--- C7QSR3_CYAP0); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00042127g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|120; (*GB) gi|225466219|ref|XP_002267209.1| (e_value=2e-45) PREDICTED: flavonol sulfotransferase-like [Vitis vinifera];; (*SWP) sp|Q9M1V2|SOT5_ARATH (e_value=4e-37) Cytosolic sulfotransferase 5 OS=Arabidopsis thaliana GN=SOT5 PE=1 SV=1;; (*TAIR) AT3G45070.1 (e_value=3e-38) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16486378-16487349 REVERSE LENGTH=323;; (*ITAG) Solyc05g011870.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbS00007345g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|57013935|ref|YP_173408.1| (e_value=7e-44) hypothetical protein NitaMp064 [Nicotiana tabacum]; NbS00007345g0011.1 protein AED:0.06 eAED:0.48 QI:0|0|0.5|1|0|0|2|42|79 NbS00007345g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|57013934|ref|YP_173407.1| (e_value=8e-54) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00038445g0016.1 protein AED:0.09 eAED:0.09 QI:0|0.88|0.9|1|0.77|0.9|10|0|620; (*GB) gi|296086085|emb|CBI31526.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9HAU5|RENT2_HUMAN (e_value=2e-73) Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1 SV=1;; (*TAIR) AT2G39260.1 (e_value=0.0) | Symbols: | binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181;; (*ITAG) Solyc04g049760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42488578-42509448 transcript_region:SL2.40ch04:42488578..42509448+ go_terms:GO:0042802 functional_description:"Nonsense-mediated mRNA decay 2 protein (AHRD V1 *--- Q2USJ1_ASPOR); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0042802 NbS00038445g0013.1 protein AED:0.28 eAED:0.28 QI:0|0|0.16|0.66|0|0.16|6|0|529; (*GB) gi|296086085|emb|CBI31526.3| (e_value=1e-74) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9HAU5|RENT2_HUMAN (e_value=2e-28) Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1 SV=1;; (*TAIR) AT2G39260.1 (e_value=3e-51) | Symbols: | binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181;; (*ITAG) Solyc04g049770.2.1 (e_value=1e-126) genomic_reference:SL2.40ch04 gene_region:42512636-42517465 transcript_region:SL2.40ch04:42512636..42517465+ go_terms:GO:0016070,GO:0005488 functional_description:"Nonsense-mediated mRNA decay 2 protein (AHRD V1 **-- Q2USJ1_ASPOR); contains Interpro domain(s) IPR007193 Up-frameshift suppressor 2 "; GO:0016070,GO:0005488 NbS00061046g0003.1 protein AED:0.17 eAED:0.21 QI:0|0|0|0.66|0|0.33|3|0|287; (*GB) gi|255573889|ref|XP_002527863.1| (e_value=1e-121) 3-oxo-5-alpha-steroid 4-dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q38944|DET2_ARATH (e_value=6e-104) Probable steroid reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=2 SV=2;; (*TAIR) AT2G38050.1 (e_value=5e-105) | Symbols: DET2, DWF6, ATDET2 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:15921303-15922176 REVERSE LENGTH=262;; (*ITAG) Solyc10g086500.1.1 (e_value=1e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64629234-64630007 transcript_region:SL2.40ch10:64629234..64630007+ go_terms:GO:0016020,GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein expressed (AHRD V1 ***- Q53NE6_ORYSJ); contains Interpro domain(s) IPR016636 3-oxo-5-alpha-steroid 4-dehydrogenase IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016020,GO:0016021 NbS00039093g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|0.66|0.75|4|0|311; (*GB) gi|350536791|ref|NP_001234777.1| (e_value=0.0) ACI14 protein [Solanum lycopersicum];; (*TAIR) AT3G09970.1 (e_value=3e-167) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:3063813-3065337 FORWARD LENGTH=309;; (*ITAG) Solyc09g009170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2498781-2502185 transcript_region:SL2.40ch09:2498781..2502185+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase family protein (AHRD V1 **-* Q5LN54_SILPO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0004722 NbS00039093g0014.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|4|0|230; (*GB) gi|4584515|emb|CAB40749.1| (e_value=1e-119) starch branching enzyme II [Solanum tuberosum];; (*SWP) sp|O23647|GLGB1_ARATH (e_value=4e-37) 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.1 PE=1 SV=1;; (*TAIR) AT2G36390.1 (e_value=3e-38) | Symbols: SBE2.1, BE3 | starch branching enzyme 2.1 | chr2:15264283-15269940 FORWARD LENGTH=858;; (*ITAG) Solyc09g009190.2.1 (e_value=1e-111) genomic_reference:SL2.40ch09 gene_region:2539818-2558047 transcript_region:SL2.40ch09:2539818..2558047+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme II (AHRD V1 **** P93691_WHEAT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00039093g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.61|0.92|0.83|0.76|13|153|752; (*GB) gi|225464625|ref|XP_002275958.1| (e_value=0.0) PREDICTED: translocation protein SEC63 homolog [Vitis vinifera];; (*SWP) sp|Q8VHE0|SEC63_MOUSE (e_value=1e-24) Translocation protein SEC63 homolog OS=Mus musculus GN=Sec63 PE=1 SV=4;; (*TAIR) AT1G79940.3 (e_value=0.0) | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-containing protein | chr1:30070023-30073237 FORWARD LENGTH=687;; (*ITAG) Solyc09g009180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2524547-2534262 transcript_region:SL2.40ch09:2524547..2534262- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C8ZVX3_ENTGA); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00019821g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|293|419; (*GB) gi|224053575|ref|XP_002297880.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZJ1|IRX10_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1;; (*TAIR) AT1G27440.1 (e_value=0.0) | Symbols: GUT2, IRX10, ATGUT1 | Exostosin family protein | chr1:9529265-9531213 REVERSE LENGTH=412;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00033045g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|224128806|ref|XP_002320426.1| (e_value=1e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=9e-35) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=7e-36) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc12g096580.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63777456-63782098 transcript_region:SL2.40ch12:63777456..63782098+ go_terms:GO:0016020 functional_description:"Potassium transporter (AHRD V1 ***- Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00033045g0006.1 protein AED:0.36 eAED:0.40 QI:61|0.75|0.66|1|0.62|0.77|9|0|231; (*GB) gi|33312438|gb|AAQ04061.1| (e_value=4e-153) 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum];; (*SWP) sp|O80575|RISB_ARATH (e_value=5e-82) 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1;; (*TAIR) AT2G44050.1 (e_value=4e-83) | Symbols: COS1 | 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase | chr2:18224304-18225917 FORWARD LENGTH=227;; (*ITAG) Solyc12g096590.1.1 (e_value=8e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63783509-63787350 transcript_region:SL2.40ch12:63783509..63787350- go_terms:GO:0009349 functional_description:"6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 ***- B2CM14_SOLCH); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase "; GO:0009349 NbS00039179g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|12963415|gb|AAK11255.1|AF329729_1 (e_value=9e-76) regulator of gene silencing [Nicotiana tabacum];; (*SWP) sp|Q8RYK0|CML31_ORYSJ (e_value=1e-43) Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=2e-42) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc06g073830.1.1 (e_value=8e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41978680-41979234 transcript_region:SL2.40ch06:41978680..41979234- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028762g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|0.75|0.8|5|19|222; (*GB) gi|255538020|ref|XP_002510075.1| (e_value=2e-59) peptidylprolyl isomerase, putative [Ricinus communis];; (*SWP) sp|Q9FJL3|FKB65_ARATH (e_value=1e-43) Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1;; (*TAIR) AT5G48570.1 (e_value=8e-45) | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr5:19690746-19693656 REVERSE LENGTH=578;; (*ITAG) Solyc04g077660.2.1 (e_value=3e-87) genomic_reference:SL2.40ch04 gene_region:60187227-60195929 transcript_region:SL2.40ch04:60187227..60195929+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00028762g0010.1 protein AED:0.14 eAED:0.15 QI:168|0.5|0.4|1|0.25|0.2|5|0|195; (*GB) gi|30580327|sp|O24150.2|CAMT3_TOBAC (e_value=8e-118) RecName: Full=Caffeoyl-CoA O-methyltransferase 3; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase 3; Short=CCoAMT-3; Short=CCoAOMT-3;; (*SWP) sp|O24150|CAMT3_TOBAC (e_value=2e-119) Caffeoyl-CoA O-methyltransferase 3 OS=Nicotiana tabacum GN=CCOAOMT3 PE=2 SV=2;; (*TAIR) AT4G34050.1 (e_value=4e-109) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc02g093270.2.1 (e_value=4e-119) genomic_reference:SL2.40ch02 gene_region:48756122-48757525 transcript_region:SL2.40ch02:48756122..48757525- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A8IFQ7_SOLLC); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00028762g0009.1 protein AED:0.33 eAED:0.34 QI:0|0.77|0.8|0.9|0.77|0.7|10|232|396; (*GB) gi|225458880|ref|XP_002283423.1| (e_value=2e-137) PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera];; (*SWP) sp|Q38931|FKB62_ARATH (e_value=2e-91) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=2e-92) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc04g077660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60187227-60195929 transcript_region:SL2.40ch04:60187227..60195929+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00018404g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.72|0.41|1|1|0.91|12|0|1907; (*GB) gi|359482442|ref|XP_002271263.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254952 [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=4e-75) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc03g123570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64438202-64447839 transcript_region:SL2.40ch03:64438202..64447839+ go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-* D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbS00025867g0013.1 protein AED:0.27 eAED:0.27 QI:30|1|0.5|1|1|1|2|0|576; (*GB) gi|225465247|ref|XP_002267973.1| (e_value=8e-36) PREDICTED: pentatricopeptide repeat-containing protein At1g10270-like [Vitis vinifera];; (*SWP) sp|Q9SY69|PPR29_ARATH (e_value=1e-30) Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1;; (*TAIR) AT1G10270.1 (e_value=9e-32) | Symbols: GRP23 | glutamine-rich protein 23 | chr1:3363535-3366276 FORWARD LENGTH=913;; (*ITAG) Solyc01g103160.2.1 (e_value=1e-155) genomic_reference:SL2.40ch01 gene_region:83583662-83587534 transcript_region:SL2.40ch01:83583662..83587534- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LST4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00025867g0014.1 protein AED:0.31 eAED:0.32 QI:582|0.83|0.84|1|0.75|0.84|13|0|364; (*GB) gi|359486223|ref|XP_002265374.2| (e_value=7e-142) PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera];; (*TAIR) AT4G18530.1 (e_value=2e-131) | Symbols: | Protein of unknown function (DUF707) | chr4:10217749-10220285 FORWARD LENGTH=389;; (*ITAG) Solyc01g103170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83589714-83597304 transcript_region:SL2.40ch01:83589714..83597304- go_terms:GO:0006508 functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; GO:0006508 NbS00025867g0008.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|454; (*GB) gi|46095227|gb|AAS80150.1| (e_value=0.0) ACT11D09.4 [Cucumis melo];; (*SWP) sp|Q9SY69|PPR29_ARATH (e_value=2e-146) Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1;; (*TAIR) AT1G10270.1 (e_value=1e-147) | Symbols: GRP23 | glutamine-rich protein 23 | chr1:3363535-3366276 FORWARD LENGTH=913;; (*ITAG) Solyc01g103160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83583662-83587534 transcript_region:SL2.40ch01:83583662..83587534- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LST4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00037334g0008.1 protein AED:0.24 eAED:0.25 QI:8|0.57|0.37|1|0.42|0.62|8|0|686; (*GB) gi|225435347|ref|XP_002282455.1| (e_value=0.0) PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Vitis vinifera];; (*SWP) sp|Q9SL29|CNG15_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1;; (*TAIR) AT2G28260.1 (e_value=0.0) | Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678;; (*ITAG) Solyc11g069580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51293074-51297223 transcript_region:SL2.40ch11:51293074..51297223- go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00037334g0009.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.2|0.5|0.6|5|0|254; (*ITAG) Solyc11g069580.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51293074-51297223 transcript_region:SL2.40ch11:51293074..51297223- go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00008671g0008.1 protein AED:0.54 eAED:0.79 QI:0|0|0|1|1|1|3|0|71; (*GB) gi|334188436|ref|NP_001190551.1| (e_value=2e-26) nicotinamide mononucleotide adenylyltransferase [Arabidopsis thaliana];; (*TAIR) AT5G55810.2 (e_value=5e-29) | Symbols: NMNAT | nicotinate/nicotinamide mononucleotide adenyltransferase | chr5:22584229-22586239 REVERSE LENGTH=264;; (*ITAG) Solyc07g065590.2.1 (e_value=3e-35) genomic_reference:SL2.40ch07 gene_region:64511859-64515895 transcript_region:SL2.40ch07:64511859..64515895- go_terms:GO:0004515 functional_description:"Nicotinamide mononucleotide adenylyltransferase 1 (AHRD V1 **** C1BT21_9MAXI); contains Interpro domain(s) IPR005248 Probable nicotinate-nucleotide adenylyltransferase "; GO:0004515 NbS00008671g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|233; (*GB) gi|334302505|gb|AEG75669.1| (e_value=1e-44) CCAAT-box binding factor HAP3-like protein [Picea abies];; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=1e-41) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=6e-43) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc04g015060.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5258000-5260765 transcript_region:SL2.40ch04:5258000..5260765+ go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-*- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00026436g0005.1 protein AED:0.12 eAED:0.18 QI:0|0.62|0.44|0.88|0.5|0.66|9|0|447; (*GB) gi|224097868|ref|XP_002311086.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91YQ5|RPN1_MOUSE (e_value=3e-57) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1;; (*TAIR) AT2G01720.1 (e_value=0.0) | Symbols: | Ribophorin I | chr2:317193-320016 REVERSE LENGTH=464;; (*ITAG) Solyc05g056130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64671484-64678342 transcript_region:SL2.40ch05:64671484..64678342- go_terms:GO:0005515,GO:0004576 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 ***- C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I "; GO:0005515,GO:0004576 NbS00013458g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|178; (*GB) gi|224102847|ref|XP_002312826.1| (e_value=1e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52500.1 (e_value=4e-49) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:19465644-19467053 REVERSE LENGTH=469;; (*ITAG) Solyc06g074000.1.1 (e_value=5e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42131696-42133081 transcript_region:SL2.40ch06:42131696..42133081- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00009704g0005.1 protein AED:0.11 eAED:0.11 QI:791|1|1|1|0.75|0.8|5|512|395; (*GB) gi|225436797|ref|XP_002269323.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera];; (*SWP) sp|Q8VY21|TLP3_ARATH (e_value=0.0) Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1;; (*TAIR) AT2G47900.2 (e_value=0.0) | Symbols: AtTLP3, TLP3 | tubby like protein 3 | chr2:19611196-19612766 REVERSE LENGTH=406;; (*ITAG) Solyc09g074510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61805393-61810886 transcript_region:SL2.40ch09:61805393..61810886+ go_terms:GO:0008020 functional_description:"Tubby-like F-box protein 3 (AHRD V1 ***- TLP3_ARATH); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0008020 NbS00030566g0003.1 protein AED:0.11 eAED:0.11 QI:294|1|1|1|1|1|7|824|271; (*GB) gi|350536097|ref|NP_001234741.1| (e_value=4e-136) ACI13 protein [Solanum lycopersicum];; (*TAIR) AT5G51840.1 (e_value=3e-92) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21072143-21074131 FORWARD LENGTH=245;; (*ITAG) Solyc11g072300.1.1 (e_value=8e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52572323-52578409 transcript_region:SL2.40ch11:52572323..52578409- functional_description:"Os10g0188400 protein (Fragment) (AHRD V1 *--- C7J7Z0_ORYSJ)"; NbS00059116g0016.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.2|1|0.5|0.4|5|0|372; (*GB) gi|116323|sp|P29059.1|CHI3_TOBAC (e_value=4e-136) RecName: Full=Endochitinase 3; Flags: Precursor;; (*SWP) sp|P29059|CHI3_TOBAC (e_value=1e-137) Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1;; (*TAIR) AT3G12500.1 (e_value=8e-94) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g055800.1.1 (e_value=4e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52885305-52886445 transcript_region:SL2.40ch10:52885305..52886445- go_terms:GO:0005975,GO:0008061,GO:0016998 functional_description:"Chitinase (AHRD V1 ***- B9VRK7_CAPAN); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0005975,GO:0008061,GO:0016998 NbS00059116g0015.1 protein AED:0.27 eAED:0.34 QI:0|0.5|0.2|1|0.25|0.4|5|0|213; (*GB) gi|356543973|ref|XP_003540432.1| (e_value=1e-97) PREDICTED: expansin-like A1-like [Glycine max];; (*SWP) sp|Q9SVE5|EXLA2_ARATH (e_value=8e-78) Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1;; (*TAIR) AT4G38400.1 (e_value=6e-79) | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 | expansin-like A2 | chr4:17978675-17979665 REVERSE LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=2e-98) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00059116g0002.1 protein AED:0.34 eAED:0.34 QI:219|0.5|0.4|1|1|1|5|0|312; (*GB) gi|328497229|dbj|BAK18781.1| (e_value=8e-96) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P93479|RETO_PAPSO (e_value=9e-38) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT5G44440.1 (e_value=4e-30) | Symbols: | FAD-binding Berberine family protein | chr5:17910694-17912295 REVERSE LENGTH=533;; (*ITAG) Solyc04g080400.1.1 (e_value=6e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00059116g0013.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0.33|3|0|258; (*GB) gi|328497229|dbj|BAK18781.1| (e_value=2e-140) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P93479|RETO_PAPSO (e_value=3e-45) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT4G20860.1 (e_value=4e-53) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc04g080400.1.1 (e_value=6e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00021005g0003.1 protein AED:0.04 eAED:0.08 QI:4659|0.57|0.5|0.75|0.57|0.5|8|0|242; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-22) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00021005g0017.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|0.5|0.66|3|0|263 NbS00005065g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|255578404|ref|XP_002530067.1| (e_value=4e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G39340.1 (e_value=1e-32) | Symbols: | Protein of unknown function (DUF1278) | chr4:18293129-18293512 REVERSE LENGTH=127;; (*ITAG) Solyc04g071640.1.1 (e_value=9e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56200483-56200872 transcript_region:SL2.40ch04:56200483..56200872- functional_description:"ECA1 protein (AHRD V1 *-*- Q53JF8_ORYSJ); contains Interpro domain(s) IPR010701 Protein of unknown function DUF1278 "; NbS00018901g0005.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|1|1|2|0|248; (*GB) gi|224138116|ref|XP_002326522.1| (e_value=2e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|O49686|PYR1_ARATH (e_value=7e-87) Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1;; (*TAIR) AT4G17870.1 (e_value=5e-88) | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191;; (*ITAG) Solyc06g061180.1.1 (e_value=1e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35573953-35574594 transcript_region:SL2.40ch06:35573953..35574594+ go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYR1 (AHRD V1 **-- PYR1_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00008374g0012.1 protein AED:0.19 eAED:0.19 QI:225|0.71|0.87|1|0.85|0.87|8|344|383; (*GB) gi|357521469|ref|XP_003631023.1| (e_value=9e-150) Zinc finger protein [Medicago truncatula];; (*SWP) sp|O43670|ZN207_HUMAN (e_value=6e-35) Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 PE=1 SV=1;; (*TAIR) AT1G30970.1 (e_value=2e-125) | Symbols: SUF4 | zinc finger (C2H2 type) family protein | chr1:11040613-11043593 REVERSE LENGTH=367;; (*ITAG) Solyc02g081620.2.1 (e_value=1e-180) genomic_reference:SL2.40ch02 gene_region:40082180-40089741 transcript_region:SL2.40ch02:40082180..40089741+ go_terms:GO:0003677,GO:0005622 functional_description:"Zinc finger protein 207 (AHRD V1 *-*- Q28FC3_XENTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003677,GO:0005622 NbS00008374g0013.1 protein AED:0.20 eAED:0.20 QI:205|0.92|0.71|1|0.92|0.92|14|0|664; (*GB) gi|297744422|emb|CBI37684.3| (e_value=5e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94481|TFC5_SCHPO (e_value=3e-13) Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdp1 PE=2 SV=1;; (*TAIR) AT4G39160.1 (e_value=2e-48) | Symbols: | Homeodomain-like superfamily protein | chr4:18236828-18239744 FORWARD LENGTH=601;; (*ITAG) Solyc02g081640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00008374g0018.1 protein AED:0.63 eAED:0.63 QI:0|0|0.25|0.5|0.33|0.5|4|0|143; (*GB) gi|3152596|gb|AAC17077.1| (e_value=5e-39) YUP8H12R.36 [Arabidopsis thaliana];; (*TAIR) AT1G79020.1 (e_value=3e-36) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr1:29727282-29730059 REVERSE LENGTH=453;; (*ITAG) Solyc02g081650.2.1 (e_value=4e-59) genomic_reference:SL2.40ch02 gene_region:40098912-40106547 transcript_region:SL2.40ch02:40098912..40106547+ go_terms:GO:0003700 functional_description:"Enhancer of polycomb-like protein (AHRD V1 ***- B9N5C9_POPTR); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003700 NbS00008374g0014.1 protein AED:0.21 eAED:0.66 QI:0|0|0.5|1|0|0|2|29|71 NbS00010333g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.57|1|0.66|0.57|7|268|1311; (*GB) gi|224116784|ref|XP_002317391.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P09122|DPO3X_BACSU (e_value=4e-35) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT4G18820.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:10330371-10334090 FORWARD LENGTH=1097;; (*ITAG) Solyc02g072090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35942239-35950672 transcript_region:SL2.40ch02:35942239..35950672- go_terms:GO:0009360,GO:0017111,GO:0006260 functional_description:"DNA polymerase III subunit gamma/tau (AHRD V1 *-*- D3EN68_UCYNA); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0017111,GO:0006260 NbS00009973g0013.1 protein AED:0.13 eAED:0.20 QI:0|0|0|1|0|0.16|6|0|404; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=3e-125) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=1e-115) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=1e-169) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00009973g0011.1 protein AED:0.22 eAED:0.34 QI:0|0.57|0.5|1|0.28|0.37|8|0|379; (*GB) gi|34393752|dbj|BAC84952.1| (e_value=4e-153) PHCLF3 [Petunia x hybrida];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=3e-69) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=2e-70) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=6e-147) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00009973g0010.1 protein AED:0.39 eAED:0.39 QI:0|1|0.75|1|0|0.5|4|0|146; (*GB) gi|350536471|ref|NP_001234760.1| (e_value=1e-49) EZ1 protein [Solanum lycopersicum];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=8e-26) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=6e-27) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00009973g0012.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|65; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=5e-25) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=2e-23) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=1e-35) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00014887g0015.1 protein AED:0.11 eAED:0.11 QI:88|0.87|0.77|1|0.87|0.77|9|0|260; (*GB) gi|297735019|emb|CBI17381.3| (e_value=2e-166) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q58E77|WD82B_XENLA (e_value=2e-65) WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1;; (*TAIR) AT5G66240.1 (e_value=4e-154) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:26466268-26468201 FORWARD LENGTH=328;; (*ITAG) Solyc02g083940.2.1 (e_value=3e-174) genomic_reference:SL2.40ch02 gene_region:41756601-41762285 transcript_region:SL2.40ch02:41756601..41762285+ go_terms:GO:0042800 functional_description:"WD repeat protein-like (AHRD V1 **-- Q8RXD8_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042800 NbS00014887g0016.1 protein AED:0.09 eAED:0.10 QI:0|0.66|0.25|1|0.66|0.5|4|0|337; (*GB) gi|61217028|sp|Q8LL11.1|WUS_PETHY (e_value=3e-149) RecName: Full=Protein WUSCHEL; AltName: Full=PhWUS; AltName: Full=Protein TERMINATOR;; (*SWP) sp|Q8LL11|WUS_PETHY (e_value=8e-151) Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1;; (*TAIR) AT2G17950.1 (e_value=6e-42) | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily protein | chr2:7809100-7810671 REVERSE LENGTH=292;; (*ITAG) Solyc02g083950.2.1 (e_value=3e-116) genomic_reference:SL2.40ch02 gene_region:41768119-41769544 transcript_region:SL2.40ch02:41768119..41769544- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00014887g0017.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.5|1|0.6|0.5|6|0|516; (*GB) gi|225431153|ref|XP_002268446.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250563 [Vitis vinifera];; (*SWP) sp|Q66JG8|ALKB5_XENTR (e_value=2e-12) Probable alpha-ketoglutarate-dependent dioxygenase ABH5 OS=Xenopus tropicalis GN=alkbh5 PE=2 SV=1;; (*TAIR) AT2G17970.1 (e_value=2e-168) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:7819116-7821276 REVERSE LENGTH=507;; (*ITAG) Solyc02g083960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41782529-41787702 transcript_region:SL2.40ch02:41782529..41787702- go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00060850g0005.1 protein AED:0.35 eAED:0.64 QI:0|0|0|0.75|0|0.25|4|0|241; (*ITAG) Solyc01g111480.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00027955g0008.1 protein AED:0.55 eAED:0.55 QI:0|1|0|1|1|1|2|0|79; (*GB) gi|255571821|ref|XP_002526853.1| (e_value=2e-38) microsomal signal peptidase 25 kD subunit, putative [Ricinus communis];; (*SWP) sp|P58684|SPCS2_ARATH (e_value=3e-39) Probable signal peptidase complex subunit 2 OS=Arabidopsis thaliana GN=At2g39960 PE=2 SV=1;; (*TAIR) AT2G39960.1 (e_value=2e-40) | Symbols: | Microsomal signal peptidase 25 kDa subunit (SPC25) | chr2:16681666-16683491 REVERSE LENGTH=192;; (*ITAG) Solyc04g072110.2.1 (e_value=2e-34) genomic_reference:SL2.40ch04 gene_region:56746214-56746721 transcript_region:SL2.40ch04:56746214..56746721- go_terms:GO:0016021 functional_description:"Microsomal signal peptidase subunit(SPC25)-like protein (AHRD V1 ***- Q6Z7E3_ORYSJ); contains Interpro domain(s) IPR009582 Microsomal signal peptidase 25 kDa subunit "; GO:0016021 NbS00027955g0011.1 protein AED:0.06 eAED:0.06 QI:102|1|1|1|0.88|0.9|10|240|336; (*GB) gi|15234031|ref|NP_192713.1| (e_value=0.0) Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|A6QP05|DHR12_BOVIN (e_value=2e-82) Dehydrogenase/reductase SDR family member 12 OS=Bos taurus GN=DHRS12 PE=2 SV=1;; (*TAIR) AT4G09750.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:6146770-6148698 FORWARD LENGTH=322;; (*ITAG) Solyc00g009140.2.1 (e_value=1e-116) genomic_reference:SL2.40ch00 gene_region:8835428-8837855 transcript_region:SL2.40ch00:8835428..8837855+ go_terms:GO:0008152 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A4A816_9GAMM); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR "; GO:0008152 NbS00026936g0004.1 protein AED:0.16 eAED:0.60 QI:0|1|0.5|1|1|1|2|27|137; (*GB) gi|224117478|ref|XP_002317584.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g064290.2.1 (e_value=2e-29) genomic_reference:SL2.40ch07 gene_region:63720022-63724236 transcript_region:SL2.40ch07:63720022..63724236- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-21 (AHRD V1 *-*- C1BQH4_9MAXI); contains Interpro domain(s) IPR013684 Miro-like "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00008231g0005.1 protein AED:0.15 eAED:0.18 QI:266|0.56|0.82|1|0.68|0.82|17|394|418; (*GB) gi|224143716|ref|XP_002325050.1| (e_value=4e-165) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57410.1 (e_value=3e-138) | Symbols: | Afadin/alpha-actinin-binding protein | chr5:23265102-23267641 REVERSE LENGTH=373;; (*ITAG) Solyc07g019530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11870847-11881688 transcript_region:SL2.40ch07:11870847..11881688+ functional_description:"Afadin- and alpha-actinin-binding protein (AHRD V1 **-- ADIP_MOUSE)"; NbS00014217g0009.1 protein AED:0.17 eAED:0.17 QI:143|1|1|1|0.95|0.90|21|221|766; (*GB) gi|356516279|ref|XP_003526823.1| (e_value=0.0) PREDICTED: uncharacterized protein sll1770-like [Glycine max];; (*SWP) sp|P73627|Y1770_SYNY3 (e_value=9e-170) Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1;; (*TAIR) AT5G64940.2 (e_value=0.0) | Symbols: ATATH13, ATH13 | ABC2 homolog 13 | chr5:25949116-25953326 FORWARD LENGTH=761;; (*ITAG) Solyc04g054190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51052577-51062636 transcript_region:SL2.40ch04:51052577..51062636+ go_terms:GO:0005215 functional_description:"ABC-1 domain protein (AHRD V1 **-- D7E596_NOSA0); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00014217g0014.1 protein AED:0.18 eAED:0.18 QI:42|1|0.6|1|0.75|0.8|5|0|579; (*GB) gi|225438581|ref|XP_002280314.1| (e_value=0.0) PREDICTED: protein CPR-5-like [Vitis vinifera];; (*SWP) sp|Q9LV85|CPR5_ARATH (e_value=8e-109) Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5 PE=1 SV=1;; (*TAIR) AT5G64930.1 (e_value=6e-110) | Symbols: CPR5, HYS1 | CPR5 protein, putative | chr5:25945885-25948321 REVERSE LENGTH=564;; (*ITAG) Solyc04g054170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51021361-51028895 transcript_region:SL2.40ch04:51021361..51028895+ functional_description:"CPR5 (Fragment) (AHRD V1 *-*- B0ZWT2_ARATH)"; NbS00014217g0007.1 protein AED:0.10 eAED:0.10 QI:715|1|1|1|0.53|0.71|14|475|190; (*GB) gi|356512738|ref|XP_003525073.1| (e_value=3e-106) PREDICTED: uncharacterized protein LOC100805080 [Glycine max];; (*TAIR) AT5G10010.1 (e_value=2e-98) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). | chr5:3128098-3131452 FORWARD LENGTH=434;; (*ITAG) Solyc04g054180.2.1 (e_value=6e-125) genomic_reference:SL2.40ch04 gene_region:51030426-51037336 transcript_region:SL2.40ch04:51030426..51037336- functional_description:"Os02g0519300 protein (Fragment) (AHRD V1 *-*- C7IY37_ORYSJ)"; NbS00038139g0005.1 protein AED:0.24 eAED:0.24 QI:38|1|1|1|0.9|0.81|11|280|599; (*GB) gi|255561803|ref|XP_002521911.1| (e_value=7e-156) iaa-alanine resistance protein, putative [Ricinus communis];; (*SWP) sp|Q9M647|IAR1_ARATH (e_value=6e-143) IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3;; (*TAIR) AT1G68100.1 (e_value=4e-144) | Symbols: IAR1 | ZIP metal ion transporter family | chr1:25521325-25524032 FORWARD LENGTH=469;; (*ITAG) Solyc04g008340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1996927-2005002 transcript_region:SL2.40ch04:1996927..2005002- go_terms:GO:0016020 functional_description:"Zinc transporter (AHRD V1 *-*- B0WKX7_CULQU); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00038139g0004.1 protein AED:0.04 eAED:0.04 QI:47|0.75|0.76|1|0.91|0.84|13|420|631; (*GB) gi|255561807|ref|XP_002521913.1| (e_value=0.0) PLE, putative [Ricinus communis];; (*SWP) sp|Q9SIS3|MA656_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1;; (*TAIR) AT2G01910.1 (e_value=0.0) | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated protein (MAP65/ASE1) family protein | chr2:417191-420182 FORWARD LENGTH=608;; (*ITAG) Solyc04g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1974768-1980633 transcript_region:SL2.40ch04:1974768..1980633+ go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** C0JA45_ORYPU); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00013141g0004.1 protein AED:0.39 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc02g083790.2.1 (e_value=1e-17) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00013141g0010.1 protein AED:0.05 eAED:0.05 QI:158|0.82|0.72|1|0.82|0.77|18|747|3880; (*GB) gi|359475153|ref|XP_002281272.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase SMG1 [Vitis vinifera];; (*SWP) sp|Q8BKX6|SMG1_MOUSE (e_value=1e-137) Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1 SV=3;; (*TAIR) AT1G50030.1 (e_value=1e-63) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2481;; (*ITAG) Solyc01g109080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbS00055301g0002.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|59 NbS00020475g0009.1 protein AED:0.09 eAED:0.09 QI:593|1|1|1|1|1|2|388|530; (*GB) gi|225446940|ref|XP_002263849.1| (e_value=0.0) PREDICTED: probable polyol transporter 4 [Vitis vinifera];; (*SWP) sp|Q0WUU6|PLT4_ARATH (e_value=0.0) Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1;; (*TAIR) AT2G20780.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:8947496-8949170 REVERSE LENGTH=526;; (*ITAG) Solyc12g010690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3627524-3630301 transcript_region:SL2.40ch12:3627524..3630301+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 1 (AHRD V1 ***- GTR1_RABIT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00020475g0003.1 protein AED:0.00 eAED:0.00 QI:561|1|1|1|1|0.75|4|114|354; (*GB) gi|297739243|emb|CBI28894.3| (e_value=4e-49) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G14830.1 (e_value=4e-29) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6365818 FORWARD LENGTH=454;; (*ITAG) Solyc12g010700.1.1 (e_value=6e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3630935-3632819 transcript_region:SL2.40ch12:3630935..3632819- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00048537g0020.1 protein AED:0.10 eAED:0.10 QI:139|0.55|0.7|0.8|0.33|0.6|10|722|1370; (*GB) gi|359492549|ref|XP_002283309.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259158 [Vitis vinifera];; (*TAIR) AT1G27750.1 (e_value=9e-151) | Symbols: | nucleic acid binding | chr1:9657425-9661750 FORWARD LENGTH=1075;; (*ITAG) Solyc04g077940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60395094-60411312 transcript_region:SL2.40ch04:60395094..60411312- go_terms:GO:0003676,GO:0000166 functional_description:"Flowering time control protein FPA (AHRD V1 *-*- FPA_ARATH); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal "; GO:0003676,GO:0000166 NbS00048537g0013.1 protein AED:0.14 eAED:0.16 QI:0|0.5|0.6|1|1|1|5|220|423; (*GB) gi|255538082|ref|XP_002510106.1| (e_value=1e-24) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q7XHI9|BH084_ARATH (e_value=1e-21) Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1;; (*TAIR) AT2G14760.1 (e_value=1e-22) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328;; (*ITAG) Solyc04g077960.1.1 (e_value=1e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:60414629-60416069 transcript_region:SL2.40ch04:60414629..60416069- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B5AEK3_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00048537g0018.1 protein AED:0.17 eAED:0.23 QI:0|0|0.5|1|0|0|2|167|43 NbS00001678g0005.1 protein AED:0.08 eAED:0.08 QI:173|1|0.8|1|1|1|5|206|397; (*GB) gi|225424562|ref|XP_002285340.1| (e_value=0.0) PREDICTED: probable pectate lyase 5 [Vitis vinifera];; (*SWP) sp|Q9FXD8|PLY5_ARATH (e_value=0.0) Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2;; (*TAIR) AT1G67750.1 (e_value=0.0) | Symbols: | Pectate lyase family protein | chr1:25401660-25403165 FORWARD LENGTH=408;; (*ITAG) Solyc05g014000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7501147-7503953 transcript_region:SL2.40ch05:7501147..7503953- go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** D3IZZ1_GOSHE); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00028877g0009.1 protein AED:0.13 eAED:0.16 QI:0|1|0.33|1|1|1|3|1156|165; (*GB) gi|297739626|emb|CBI29808.3| (e_value=4e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57360.1 (e_value=3e-43) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:21225571-21226621 FORWARD LENGTH=254;; (*ITAG) Solyc10g079310.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60188601-60190173 transcript_region:SL2.40ch10:60188601..60190173+ functional_description:"tRNA-splicing endonuclease subunit sen54 (AHRD V1 *-*- B6JWH8_SCHJY)"; NbS00028877g0011.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|520; (*GB) gi|298205228|emb|CBI17287.3| (e_value=1e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43490.1 (e_value=1e-17) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469256 REVERSE LENGTH=185;; (*ITAG) Solyc05g053770.2.1 (e_value=2e-133) genomic_reference:SL2.40ch05 gene_region:62942781-62950268 transcript_region:SL2.40ch05:62942781..62950268- functional_description:"At5g48610-like protein (Fragment) (AHRD V1 *-*- Q6XWA2_ARATH)"; NbS00028877g0007.1 protein AED:0.28 eAED:0.28 QI:13|1|1|1|1|1|2|873|198; (*GB) gi|113374278|gb|ABI34703.1| (e_value=3e-81) DnaJ-like protein isoform [Solanum phureja];; (*SWP) sp|Q9SDN0|DNJ20_ARATH (e_value=6e-63) Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2;; (*TAIR) AT4G13830.2 (e_value=4e-64) | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577 FORWARD LENGTH=197;; (*ITAG) Solyc05g053760.2.1 (e_value=5e-89) genomic_reference:SL2.40ch05 gene_region:62934657-62937298 transcript_region:SL2.40ch05:62934657..62937298+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 20 (AHRD V1 ***- B6U349_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00009827g0010.1 protein AED:0.43 eAED:0.47 QI:0|1|0|1|1|1|2|0|233; (*GB) gi|2499328|sp|Q43844.1|NDUS7_SOLTU (e_value=2e-105) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial; AltName: Full=Complex I-20kD; Short=CI-20kD; AltName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43844|NDUS7_SOLTU (e_value=6e-107) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=5e-97) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=2e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00009827g0004.1 protein AED:0.63 eAED:0.63 QI:0|-1|0|1|-1|1|1|0|124 NbS00009827g0012.1 protein AED:0.21 eAED:0.21 QI:11|1|1|1|1|1|5|141|501; (*GB) gi|224092206|ref|XP_002309508.1| (e_value=1e-100) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11780.1 (e_value=3e-55) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3793928-3795983 FORWARD LENGTH=504;; (*ITAG) Solyc08g065440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50677503-50681942 transcript_region:SL2.40ch08:50677503..50681942- functional_description:"Os01g0600300 protein (Fragment) (AHRD V1 *-*- Q0JLH4_ORYSJ)"; NbS00028722g0014.1 protein AED:0.03 eAED:0.03 QI:72|0.83|0.85|1|0.5|0.71|7|60|559; (*GB) gi|225437846|ref|XP_002263743.1| (e_value=5e-134) PREDICTED: CDT1-like protein a, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SJW9|CDT1A_ARATH (e_value=9e-39) CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1;; (*TAIR) AT2G31270.1 (e_value=7e-40) | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast CDT1 A | chr2:13329037-13331544 FORWARD LENGTH=571;; (*ITAG) Solyc06g008510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2402505-2405642 transcript_region:SL2.40ch06:2402505..2405642+ go_terms:GO:0005515,GO:0004693 functional_description:"CDT1a protein (AHRD V1 ***- Q710F0_ARATH); contains Interpro domain(s) IPR014939 DNA replication factor CDT1-like "; GO:0005515,GO:0004693 NbS00028722g0012.1 protein AED:0.19 eAED:0.19 QI:284|0.5|0.6|1|1|1|5|634|83; (*GB) gi|188529683|gb|ACD62528.1| (e_value=5e-36) bet1-like snare 1-1 [Malus x domestica];; (*SWP) sp|Q9M2J9|BET11_ARATH (e_value=3e-32) Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1;; (*TAIR) AT3G58170.1 (e_value=2e-33) | Symbols: ATBS14A, ATBET11, BET11, BS14A | BET1P/SFT1P-like protein 14A | chr3:21542632-21543775 REVERSE LENGTH=122;; (*ITAG) Solyc06g008520.2.1 (e_value=7e-38) genomic_reference:SL2.40ch06 gene_region:2406671-2410266 transcript_region:SL2.40ch06:2406671..2410266+ go_terms:GO:0005484 functional_description:"BET1 (AHRD V1 ***- B6U0C6_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00028722g0013.1 protein AED:0.19 eAED:0.20 QI:0|0.73|0.83|0.96|0.8|0.83|31|195|1277; (*GB) gi|147787627|emb|CAN71597.1| (e_value=0.0) hypothetical protein VITISV_019007 [Vitis vinifera];; (*SWP) sp|P08799|MYS2_DICDI (e_value=6e-66) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT1G54560.1 (e_value=0.0) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc06g008530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:2412529-2429116 transcript_region:SL2.40ch06:2412529..2429116- go_terms:GO:0060001 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00041987g0005.1 protein AED:0.07 eAED:0.07 QI:443|1|1|1|0|0|4|364|300; (*GB) gi|329025162|gb|AEB71564.1| (e_value=5e-140) squamosa promoter binding protein-like protein [Solanum chacoense];; (*SWP) sp|Q8GXL3|SPL8_ARATH (e_value=2e-78) Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2;; (*TAIR) AT1G02065.1 (e_value=2e-79) | Symbols: SPL8 | squamosa promoter binding protein-like 8 | chr1:365625-367149 FORWARD LENGTH=333;; (*ITAG) Solyc10g018780.1.1 (e_value=4e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:10145378-10146530 transcript_region:SL2.40ch10:10145378..10146530- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 1 (AHRD V1 *-*- Q1MU24_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00041987g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|216; (*GB) gi|224067602|ref|XP_002302512.1| (e_value=9e-19) hypothetical protein POPTRDRAFT_755123 [Populus trichocarpa];; (*SWP) sp|A2YGR5|SPL12_ORYSI (e_value=1e-13) Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1;; (*TAIR) AT2G42200.1 (e_value=2e-13) | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375;; (*ITAG) Solyc10g078700.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59754038-59758728 transcript_region:SL2.40ch10:59754038..59758728- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B1_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00035548g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.33|1|0.8|0.83|6|0|388; (*GB) gi|359485668|ref|XP_002274157.2| (e_value=8e-143) PREDICTED: peroxidase 27-like [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=8e-125) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=6e-126) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc08g075830.2.1 (e_value=2e-177) genomic_reference:SL2.40ch08 gene_region:57086913-57088336 transcript_region:SL2.40ch08:57086913..57088336+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00035548g0002.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|51511062|gb|AAU04879.1| (e_value=2e-39) peroxidase a [Eucommia ulmoides];; (*SWP) sp|O23044|PER3_ARATH (e_value=2e-32) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=2e-33) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=6e-47) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00035548g0011.1 protein AED:0.33 eAED:0.72 QI:0|0|0|0.5|0.66|0.5|4|0|265 NbS00035548g0012.1 protein AED:0.19 eAED:0.37 QI:0|0|0|1|0|0|2|0|102 NbS00058391g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|302748723|gb|ADL63842.1| (e_value=2e-36) ribosomal protein S3 [Elaeocarpus obovatus];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-37) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=7e-29) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc02g021370.1.1 (e_value=6e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:13275574-13279883 transcript_region:SL2.40ch02:13275574..13279883- go_terms:GO:0005840,GO:0016020 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- D3GFD5_9MAGN); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840,GO:0016020 NbS00051147g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.8|1|1|1|5|0|337; (*GB) gi|225456705|ref|XP_002273979.1| (e_value=2e-77) PREDICTED: uncharacterized protein LOC100241687 [Vitis vinifera];; (*TAIR) AT5G62550.1 (e_value=5e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105839-25107875 REVERSE LENGTH=487;; (*ITAG) Solyc03g113090.2.1 (e_value=8e-133) genomic_reference:SL2.40ch03 gene_region:57427944-57430724 transcript_region:SL2.40ch03:57427944..57430724+ functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 ***- Q9FJJ1_ARATH)"; NbS00051147g0007.1 protein AED:0.38 eAED:0.39 QI:0|1|0.66|1|0.5|0.33|3|0|115; (*GB) gi|323482812|gb|ADX86829.1| (e_value=2e-70) ubiquitin-conjugating enzyme [Nicotiana tabacum];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=1e-70) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=3e-71) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=3e-72) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00034559g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.90|1|0.9|0.90|11|0|775; (*GB) gi|296082654|emb|CBI21659.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NRL2|BAZ1A_HUMAN (e_value=6e-19) Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2;; (*TAIR) AT5G08630.1 (e_value=0.0) | Symbols: | DDT domain-containing protein | chr5:2798575-2802138 REVERSE LENGTH=723;; (*ITAG) Solyc05g056530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64942049-64951393 transcript_region:SL2.40ch05:64942049..64951393+ go_terms:GO:0016020 functional_description:"DDT domain-containing protein (AHRD V1 **-- D7M1G4_ARALY); contains Interpro domain(s) IPR013136 WSTF/Acf1/Cbp146 "; GO:0016020 NbS00034559g0015.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0|1|1|1|3|0|88; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=5e-45) patatin-like protein 3 [Nicotiana tabacum];; (*TAIR) AT4G37050.1 (e_value=2e-24) | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein 4 | chr4:17457261-17459642 REVERSE LENGTH=428;; (*ITAG) Solyc02g090490.2.1 (e_value=1e-44) genomic_reference:SL2.40ch02 gene_region:46594534-46596748 transcript_region:SL2.40ch02:46594534..46596748- go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00034559g0016.1 protein AED:0.32 eAED:0.40 QI:22|1|0|1|0|0|2|0|76; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=6e-34) patatin-like protein 3 [Nicotiana tabacum];; (*TAIR) AT4G37060.1 (e_value=1e-15) | Symbols: PLP5, PLA IVB, AtPLAIVB | PATATIN-like protein 5 | chr4:17461573-17463734 REVERSE LENGTH=414;; (*ITAG) Solyc02g090490.2.1 (e_value=3e-34) genomic_reference:SL2.40ch02 gene_region:46594534-46596748 transcript_region:SL2.40ch02:46594534..46596748- go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00034559g0013.1 protein AED:0.20 eAED:0.17 QI:38|0.8|0.62|1|1|1|16|528|466; (*GB) gi|296089545|emb|CBI39364.3| (e_value=1e-169) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8N4J0|CI041_HUMAN (e_value=2e-50) UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1;; (*TAIR) AT2G32170.1 (e_value=2e-155) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:13666476-13670924 FORWARD LENGTH=504;; (*ITAG) Solyc05g056520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64926739-64939085 transcript_region:SL2.40ch05:64926739..64939085- go_terms:GO:0019901,GO:0004699 functional_description:"Methyltransferase (AHRD V1 **-- B6K3A3_SCHJY); contains Interpro domain(s) IPR012901 N2227-like "; GO:0019901,GO:0004699 NbS00034559g0014.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.5|1|1|1|4|218|205; (*GB) gi|296082656|emb|CBI21661.3| (e_value=2e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|A4YGN0|SUCD_METS5 (e_value=1e-32) Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1424 PE=1 SV=1;; (*TAIR) AT5G63620.1 (e_value=4e-98) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:25466380-25468296 REVERSE LENGTH=427;; (*ITAG) Solyc05g056540.2.1 (e_value=7e-120) genomic_reference:SL2.40ch05 gene_region:64952197-64957183 transcript_region:SL2.40ch05:64952197..64957183- go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase-like protein (AHRD V1 **** Q8LDF7_ARATH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00016419g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.85|0.75|1|1|1|8|0|629; (*GB) gi|359494798|ref|XP_002263597.2| (e_value=0.0) PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Vitis vinifera];; (*SWP) sp|Q38914|ANT_ARATH (e_value=5e-129) AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2;; (*TAIR) AT4G37750.1 (e_value=3e-130) | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type DNA-binding superfamily protein | chr4:17739782-17742189 FORWARD LENGTH=555;; (*ITAG) Solyc02g092050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47836352-47839882 transcript_region:SL2.40ch02:47836352..47839882- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00016419g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|151; (*GB) gi|147797632|emb|CAN71938.1| (e_value=8e-63) hypothetical protein VITISV_038909 [Vitis vinifera];; (*SWP) sp|Q9N126|RDH8_BOVIN (e_value=4e-17) Retinol dehydrogenase 8 OS=Bos taurus GN=RDH8 PE=1 SV=1;; (*TAIR) AT5G10050.1 (e_value=3e-37) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3144254-3145643 FORWARD LENGTH=279;; (*ITAG) Solyc02g092060.1.1 (e_value=2e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47841763-47842611 transcript_region:SL2.40ch02:47841763..47842611- go_terms:GO:0004745 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7M2S9_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745 NbS00050825g0002.1 protein AED:0.20 eAED:0.20 QI:141|1|1|1|1|1|7|189|449; (*GB) gi|225426651|ref|XP_002281251.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242743 [Vitis vinifera];; (*TAIR) AT1G12420.1 (e_value=0.0) | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226673-4228917 REVERSE LENGTH=441;; (*ITAG) Solyc08g007540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2088002-2091501 transcript_region:SL2.40ch08:2088002..2091501- go_terms:GO:0008152 functional_description:"ACT domain containing protein expressed (AHRD V1 **-- Q10P43_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00050825g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|1|1|0.75|4|0|717; (*GB) gi|224116832|ref|XP_002317405.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=6e-108) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=4e-109) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g006080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:759901-763527 transcript_region:SL2.40ch03:759901..763527+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00050825g0008.1 protein AED:0.39 eAED:0.42 QI:0|0.33|0|1|0|0|4|0|273; (*GB) gi|147776333|emb|CAN72034.1| (e_value=1e-49) hypothetical protein VITISV_000078 [Vitis vinifera];; (*SWP) sp|Q9FIZ3|GSO2_ARATH (e_value=1e-36) LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2;; (*TAIR) AT5G44700.1 (e_value=9e-38) | Symbols: EDA23, GSO2 | Leucine-rich repeat transmembrane protein kinase | chr5:18033049-18036894 REVERSE LENGTH=1252;; (*ITAG) Solyc03g006080.2.1 (e_value=2e-80) genomic_reference:SL2.40ch03 gene_region:759901-763527 transcript_region:SL2.40ch03:759901..763527+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00049876g0005.1 protein AED:0.02 eAED:0.02 QI:352|1|0.75|1|0.66|0.5|4|0|217; (*GB) gi|224063519|ref|XP_002301184.1| (e_value=2e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PBN4|CQ10X_DANRE (e_value=6e-29) Coenzyme Q-binding protein COQ10 homolog, mitochondrial OS=Danio rerio GN=zgc:73324 PE=2 SV=2;; (*TAIR) AT4G17650.1 (e_value=3e-70) | Symbols: | Polyketide cyclase / dehydrase and lipid transport protein | chr4:9827749-9829443 FORWARD LENGTH=256;; (*ITAG) Solyc04g078890.2.1 (e_value=8e-133) genomic_reference:SL2.40ch04 gene_region:61136136-61141411 transcript_region:SL2.40ch04:61136136..61141411+ functional_description:"Coenzyme Q-binding protein COQ10 homolog, mitochondrial (AHRD V1 *--- CQ10X_DANRE); contains Interpro domain(s) IPR005031 Streptomyces cyclase/dehydrase "; NbS00004867g0005.1 protein AED:0.09 eAED:0.16 QI:0|0.2|0.16|1|0.2|0.16|6|0|392; (*GB) gi|255539625|ref|XP_002510877.1| (e_value=4e-164) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=2e-81) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT1G52540.1 (e_value=1e-82) | Symbols: | Protein kinase superfamily protein | chr1:19570298-19571884 REVERSE LENGTH=350;; (*ITAG) Solyc03g006890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1423023-1425234 transcript_region:SL2.40ch03:1423023..1425234+ go_terms:GO:0005515,GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase FEI 1 (AHRD V1 **** FEI1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00002238g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.2|1|0.5|0.6|5|0|256; (*GB) gi|225456416|ref|XP_002284244.1| (e_value=5e-95) PREDICTED: bidirectional sugar transporter SWEET10 [Vitis vinifera];; (*SWP) sp|Q9LUE3|SWT10_ARATH (e_value=4e-81) Bidirectional sugar transporter SWEET10 OS=Arabidopsis thaliana GN=SWEET10 PE=2 SV=1;; (*TAIR) AT5G50790.1 (e_value=3e-82) | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family protein | chr5:20656461-20657827 REVERSE LENGTH=289;; (*ITAG) Solyc03g097560.2.1 (e_value=3e-138) genomic_reference:SL2.40ch03 gene_region:53339881-53341894 transcript_region:SL2.40ch03:53339881..53341894- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- B4FBY7_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00002238g0010.1 protein AED:0.20 eAED:0.20 QI:13|1|1|1|1|1|6|42|296; (*GB) gi|257831431|gb|ACV71016.1| (e_value=5e-165) UPA16 [Capsicum annuum];; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=1e-98) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=8e-100) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097570.2.1 (e_value=8e-172) genomic_reference:SL2.40ch03 gene_region:53347015-53350566 transcript_region:SL2.40ch03:53347015..53350566- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00002238g0005.1 protein AED:0.22 eAED:0.22 QI:232|1|0.5|1|0|0.5|2|0|145; (*GB) gi|224082168|ref|XP_002306591.1| (e_value=3e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S6N5|ACC1_ORYSJ (e_value=6e-53) Acetyl-CoA carboxylase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=3 SV=1;; (*TAIR) AT1G36180.1 (e_value=7e-54) | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:13546047-13558339 FORWARD LENGTH=2355;; (*ITAG) Solyc12g056940.1.1 (e_value=5e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00024900g0002.1 protein AED:0.13 eAED:0.16 QI:0|0|0|1|1|1|2|0|464; (*GB) gi|56542467|gb|AAV92898.1| (e_value=1e-172) Avr9/Cf-9 rapidly elicited protein 102, partial [Nicotiana tabacum];; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=9e-25) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT2G46620.1 (e_value=2e-124) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491;; (*ITAG) Solyc03g082640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46100818-46102242 transcript_region:SL2.40ch03:46100818..46102242+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00017722g0001.1 protein AED:0.22 eAED:0.22 QI:70|0.66|0.6|1|0.77|0.7|10|262|429; (*GB) gi|255544812|ref|XP_002513467.1| (e_value=3e-26) ubiquitin-protein ligase, putative [Ricinus communis];; (*ITAG) Solyc04g079030.2.1 (e_value=5e-110) genomic_reference:SL2.40ch04 gene_region:61220807-61226659 transcript_region:SL2.40ch04:61220807..61226659+ go_terms:GO:0008152 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 *-*- B6TRK5_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00043104g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|246; (*GB) gi|228481109|gb|ACQ42253.1| (e_value=3e-170) SnRK2 calcium sensor [Nicotiana plumbaginifolia];; (*TAIR) AT4G38810.2 (e_value=1e-125) | Symbols: | Calcium-binding EF-hand family protein | chr4:18115607-18118860 REVERSE LENGTH=375;; (*ITAG) Solyc01g111040.2.1 (e_value=3e-168) genomic_reference:SL2.40ch01 gene_region:89209383-89212670 transcript_region:SL2.40ch01:89209383..89212670+ go_terms:GO:0005509 functional_description:"EF-Hand containing protein-like (AHRD V1 ***- Q9T0I9_ARATH); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00060275g0008.1 protein AED:0.07 eAED:0.07 QI:524|0.66|0.42|1|0.5|0.42|7|0|518; (*GB) gi|225460012|ref|XP_002271455.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249908 [Vitis vinifera];; (*SWP) sp|O59729|SLPI_SCHPO (e_value=1e-37) Uncharacterized protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slp1 PE=2 SV=1;; (*TAIR) AT1G22882.1 (e_value=3e-139) | Symbols: | Galactose-binding protein | chr1:8099150-8101220 FORWARD LENGTH=660;; (*ITAG) Solyc08g082540.2.1 (e_value=1e-114) genomic_reference:SL2.40ch08 gene_region:62459474-62464300 transcript_region:SL2.40ch08:62459474..62464300+ functional_description:"Sad1/UNC domain protein (AHRD V1 *--- D4DCK4_TRIVH); contains Interpro domain(s) IPR012919 Sad1/UNC-like, C-terminal "; NbS00060275g0003.1 protein AED:0.26 eAED:0.26 QI:181|0.5|0.66|1|0|0.33|3|0|274; (*GB) gi|255548772|ref|XP_002515442.1| (e_value=9e-177) ccr4-associated factor, putative [Ricinus communis];; (*SWP) sp|Q9SKZ2|CAF1G_ARATH (e_value=5e-158) Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2;; (*TAIR) AT2G32070.1 (e_value=4e-159) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275;; (*ITAG) Solyc11g045130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36710104-36710928 transcript_region:SL2.40ch11:36710104..36710928+ go_terms:GO:0003676,GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0003676,GO:0005634 NbS00057216g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|0|91; (*GB) gi|351724407|ref|NP_001235265.1| (e_value=2e-34) uncharacterized protein LOC100527636 [Glycine max];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=4e-33) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G74500.1 (e_value=3e-34) | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93;; (*ITAG) Solyc06g070910.2.1 (e_value=2e-41) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00050385g0006.1 protein AED:0.19 eAED:0.23 QI:29|0|0|1|0|0.33|3|0|217; (*GB) gi|195617694|gb|ACG30677.1| (e_value=4e-50) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-50) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-52) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00056806g0013.1 protein AED:0.32 eAED:0.33 QI:119|0.66|0.25|1|0.66|0.5|4|0|348; (*GB) gi|225459615|ref|XP_002285873.1| (e_value=1e-161) PREDICTED: N-glycosylase/DNA lyase [Vitis vinifera];; (*SWP) sp|O15527|OGG1_HUMAN (e_value=1e-59) N-glycosylase/DNA lyase OS=Homo sapiens GN=OGG1 PE=1 SV=2;; (*TAIR) AT1G21710.1 (e_value=3e-146) | Symbols: OGG1, ATOGG1 | 8-oxoguanine-DNA glycosylase 1 | chr1:7624439-7625869 FORWARD LENGTH=365;; (*ITAG) Solyc11g018520.1.1 (e_value=8e-128) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:8638682-8640219 transcript_region:SL2.40ch11:8638682..8640219- go_terms:GO:0003677,GO:0006289,GO:0006281 functional_description:"8-oxoguanine DNA glycosylase (AHRD V1 ***- Q0KJ38_POPNI); contains Interpro domain(s) IPR012904 8-oxoguanine DNA glycosylase, N-terminal "; GO:0003677,GO:0006289,GO:0006281 NbS00056806g0012.1 protein AED:0.25 eAED:0.25 QI:6|0.93|0.88|1|0.60|0.73|34|0|1315; (*GB) gi|224082320|ref|XP_002306647.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GX69|BGA16_ARATH (e_value=0.0) Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2;; (*TAIR) AT1G77410.1 (e_value=0.0) | Symbols: BGAL16 | beta-galactosidase 16 | chr1:29088771-29093148 REVERSE LENGTH=815;; (*ITAG) Solyc11g018500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8620702-8629947 transcript_region:SL2.40ch11:8620702..8629947+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- B9GU11_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00007505g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|255557343|ref|XP_002519702.1| (e_value=6e-52) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g070690.1.1 (e_value=4e-81) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:34932679-34933278 transcript_region:SL2.40ch02:34932679..34933278+ functional_description:"C2 domain-containing protein (AHRD V1 ***- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00042422g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|0.75|1|1|4|0|395; (*GB) gi|367465855|gb|AEX15600.1| (e_value=0.0) YUC-like protein 1 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=0.0) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc06g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1915865-1918482 transcript_region:SL2.40ch06:1915865..1918482- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbC25086184g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|167600643|gb|ABZ89185.1| (e_value=9e-83) putative protein [Coffea canephora];; (*TAIR) AT3G04550.1 (e_value=7e-58) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:1225961-1227310 FORWARD LENGTH=449;; (*ITAG) Solyc11g006060.1.1 (e_value=2e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:860023-861378 transcript_region:SL2.40ch11:860023..861378+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00S02_OSTTA)"; NbS00008793g0003.1 protein AED:0.07 eAED:0.08 QI:338|0.71|0.62|0.75|0.85|0.75|8|0|841; (*GB) gi|225465743|ref|XP_002264820.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255521 [Vitis vinifera];; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc05g016240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15260801-15268723 transcript_region:SL2.40ch05:15260801..15268723- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00008793g0007.1 protein AED:0.28 eAED:0.28 QI:91|0.85|0.87|1|0.42|0.37|8|1355|59 NbS00003015g0009.1 protein AED:0.01 eAED:0.01 QI:191|1|0.5|1|0|0.5|2|0|192; (*GB) gi|225434114|ref|XP_002276483.1| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100243911 [Vitis vinifera];; (*TAIR) AT3G59680.2 (e_value=7e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22044175-22045823 FORWARD LENGTH=229;; (*ITAG) Solyc06g053440.2.1 (e_value=8e-94) genomic_reference:SL2.40ch06 gene_region:32734236-32737124 transcript_region:SL2.40ch06:32734236..32737124+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003015g0002.1 protein AED:0.83 eAED:0.83 QI:0|1|0.5|1|0|0|2|83|138 NbS00011436g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.86|0.68|0.93|0.86|0.81|16|0|844; (*GB) gi|225440614|ref|XP_002273857.1| (e_value=0.0) PREDICTED: mitogen-activated protein kinase-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q6DFF9|MABP1_XENLA (e_value=5e-85) Mitogen-activated protein kinase-binding protein 1 OS=Xenopus laevis GN=mapkbp1 PE=2 SV=1;; (*TAIR) AT3G09080.1 (e_value=7e-126) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2776259-2781785 REVERSE LENGTH=1026;; (*ITAG) Solyc09g013160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5571336-5579186 transcript_region:SL2.40ch09:5571336..5579186+ go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat protein 62 (AHRD V1 **-- B0X0B3_CULQU); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00019639g0010.1 protein AED:0.11 eAED:0.11 QI:117|0|0.5|1|0|0|2|0|263; (*GB) gi|296087353|emb|CBI33727.3| (e_value=2e-24) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g092720.1.1 (e_value=2e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:48289282-48290199 transcript_region:SL2.40ch02:48289282..48290199+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019639g0004.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|4|0|604; (*GB) gi|225438855|ref|XP_002278713.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g24010 [Vitis vinifera];; (*SWP) sp|O22187|Y2232_ARATH (e_value=4e-149) Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1;; (*TAIR) AT2G23200.1 (e_value=3e-150) | Symbols: | Protein kinase superfamily protein | chr2:9879351-9881855 FORWARD LENGTH=834;; (*ITAG) Solyc03g044160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:12247749-12250202 transcript_region:SL2.40ch03:12247749..12250202+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00060012g0001.1 protein AED:0.13 eAED:0.13 QI:690|0.66|0.85|1|0.5|0.42|7|103|415; (*GB) gi|255586647|ref|XP_002533954.1| (e_value=6e-134) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FGD7|PUB50_ARATH (e_value=8e-120) Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1;; (*TAIR) AT5G65500.1 (e_value=7e-121) | Symbols: | U-box domain-containing protein kinase family protein | chr5:26181093-26183997 REVERSE LENGTH=791;; (*ITAG) Solyc11g010700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3735958-3740606 transcript_region:SL2.40ch11:3735958..3740606- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468,GO:0000151 NbS00060012g0010.1 protein AED:0.17 eAED:0.17 QI:176|0.83|1|1|0.83|1|7|312|655; (*GB) gi|15144504|gb|AAK84471.1| (e_value=0.0) putative permease [Solanum lycopersicum];; (*SWP) sp|Q6SZ87|NAT11_ARATH (e_value=1e-152) Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1;; (*TAIR) AT4G38050.1 (e_value=1e-153) | Symbols: | Xanthine/uracil permease family protein | chr4:17869529-17872461 REVERSE LENGTH=709;; (*ITAG) Solyc11g010690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3727300-3735391 transcript_region:SL2.40ch11:3727300..3735391+ go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 *--- B9MYJ5_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00060012g0008.1 protein AED:0.21 eAED:0.21 QI:137|0.76|0.78|1|0.76|0.71|14|188|652; (*GB) gi|225452352|ref|XP_002274778.1| (e_value=0.0) PREDICTED: pescadillo homolog [Vitis vinifera];; (*SWP) sp|A8JBB2|PESC_CHLRE (e_value=4e-150) Pescadillo homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_206018 PE=3 SV=1;; (*TAIR) AT5G14520.1 (e_value=0.0) | Symbols: | pescadillo-related | chr5:4680789-4684330 REVERSE LENGTH=590;; (*ITAG) Solyc07g047670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56216949-56224432 transcript_region:SL2.40ch07:56216949..56224432+ go_terms:GO:0003713 functional_description:"Pescadillo homolog 1 (AHRD V1 ***- B2RDF2_HUMAN); contains Interpro domain(s) IPR010613 Pescadillo, N-terminal "; GO:0003713 NbS00012711g0113.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|1|2|0|155 NbS00012711g0114.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|1|4|0|793 NbS00012711g0115.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|720 NbS00035636g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|63|427; (*GB) gi|359492538|ref|XP_002285423.2| (e_value=2e-146) PREDICTED: uncharacterized protein LOC100250545 [Vitis vinifera];; (*SWP) sp|Q9SY57|P2A10_ARATH (e_value=4e-132) Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1;; (*TAIR) AT1G10150.1 (e_value=3e-133) | Symbols: | Carbohydrate-binding protein | chr1:3326160-3327404 FORWARD LENGTH=414;; (*ITAG) Solyc04g077590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60137260-60140004 transcript_region:SL2.40ch04:60137260..60140004- functional_description:"Phloem protein (Fragment) (AHRD V1 *--- C6FDB1_9CONI)"; NbS00035636g0003.1 protein AED:0.26 eAED:0.26 QI:173|0|0.5|1|1|1|2|0|89; (*ITAG) Solyc04g077580.2.1 (e_value=2e-22) genomic_reference:SL2.40ch04 gene_region:60134451-60135144 transcript_region:SL2.40ch04:60134451..60135144+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00005085g0015.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.2|1|0.25|0.4|5|0|440; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=0.0) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=8e-147) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc03g046270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16080552-16085077 transcript_region:SL2.40ch03:16080552..16085077- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00005085g0013.1 protein AED:0.41 eAED:0.43 QI:0|0.5|0.33|1|0|0|3|0|124; (*ITAG) Solyc08g076880.2.1 (e_value=6e-44) genomic_reference:SL2.40ch08 gene_region:57977177-57978199 transcript_region:SL2.40ch08:57977177..57978199- functional_description:"Unknown Protein (AHRD V1)"; NbS00005085g0012.1 protein AED:0.02 eAED:0.02 QI:55|1|1|1|0.83|0.71|7|185|341; (*GB) gi|224127592|ref|XP_002329316.1| (e_value=1e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15880.1 (e_value=1e-101) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5185788-5187461 FORWARD LENGTH=348;; (*ITAG) Solyc03g046260.1.1 (e_value=3e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16067677-16071474 transcript_region:SL2.40ch03:16067677..16071474+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005085g0016.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|140; (*ITAG) Solyc03g046440.1.1 (e_value=9e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16749270-16750062 transcript_region:SL2.40ch03:16749270..16750062- go_terms:GO:0046982,GO:0042803 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LP72_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbS00005085g0014.1 protein AED:0.45 eAED:0.48 QI:0|0|0|0.66|0|0|3|0|125; (*GB) gi|147775392|emb|CAN73683.1| (e_value=5e-19) hypothetical protein VITISV_016120 [Vitis vinifera];; (*TAIR) AT5G15890.1 (e_value=2e-18) | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 | chr5:5187687-5189348 REVERSE LENGTH=526;; (*ITAG) Solyc02g065600.2.1 (e_value=5e-19) genomic_reference:SL2.40ch02 gene_region:31340580-31343502 transcript_region:SL2.40ch02:31340580..31343502- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00036306g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.4|1|0.75|0.8|5|0|344; (*GB) gi|225459726|ref|XP_002285892.1| (e_value=8e-152) PREDICTED: peroxidase 64-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q43872|PER64_ARATH (e_value=5e-144) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=4e-145) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc12g089370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62930211-62931423 transcript_region:SL2.40ch12:62930211..62931423- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- B9GQQ9_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00036330g0009.1 protein AED:0.26 eAED:0.26 QI:288|1|0.87|1|0.85|0.75|8|0|265; (*GB) gi|350539129|ref|NP_001234376.1| (e_value=0.0) cyclin-dependent protein kinase p34cdc2 [Solanum lycopersicum];; (*SWP) sp|Q38772|CDC2A_ANTMA (e_value=0.0) Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2;; (*TAIR) AT3G48750.1 (e_value=7e-176) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc08g066330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52077877-52083689 transcript_region:SL2.40ch08:52077877..52083689+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00017616g0005.1 protein AED:0.16 eAED:0.16 QI:173|1|1|1|0.25|0|5|274|365; (*GB) gi|188474277|gb|ACD49738.1| (e_value=3e-124) BURP domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q08298|RD22_ARATH (e_value=4e-77) Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1;; (*TAIR) AT5G25610.1 (e_value=3e-78) | Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392;; (*ITAG) Solyc08g068150.2.1 (e_value=8e-122) genomic_reference:SL2.40ch08 gene_region:54447024-54449867 transcript_region:SL2.40ch08:54447024..54449867- functional_description:"BURP domain-containing protein (AHRD V1 **-- B2ZPK7_SOLLC); contains Interpro domain(s) IPR004873 BURP "; NbS00028464g0001.1 protein AED:0.04 eAED:0.05 QI:149|0|0|0.5|1|1|2|281|172; (*GB) gi|225455980|ref|XP_002276669.1| (e_value=6e-20) PREDICTED: uncharacterized protein LOC100266297 [Vitis vinifera];; (*TAIR) AT1G67050.1 (e_value=5e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264;; (*ITAG) Solyc03g119320.1.1 (e_value=6e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:62016429-62017130 transcript_region:SL2.40ch03:62016429..62017130- functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00019273g0005.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|0.25|0.4|5|0|407; (*GB) gi|224086044|ref|XP_002307792.1| (e_value=2e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W490|PEPK2_ARATH (e_value=7e-111) Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1;; (*TAIR) AT1G12680.1 (e_value=6e-112) | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase-related kinase 2 | chr1:4320123-4322269 REVERSE LENGTH=470;; (*ITAG) Solyc01g081290.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:73033754-73041039 transcript_region:SL2.40ch01:73033754..73041039- go_terms:GO:0006468 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027824g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|969; (*GB) gi|359482053|ref|XP_002274910.2| (e_value=0.0) PREDICTED: probable receptor protein kinase TMK1-like [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc10g081910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62177615-62180770 transcript_region:SL2.40ch10:62177615..62180770+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00027824g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.6|0.8|0.77|0.8|10|0|784; (*GB) gi|225439442|ref|XP_002264659.1| (e_value=0.0) PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6DW74|DGDG1_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Lotus japonicus GN=DGD1 PE=2 SV=1;; (*TAIR) AT3G11670.1 (e_value=0.0) | Symbols: DGD1 | UDP-Glycosyltransferase superfamily protein | chr3:3681090-3684495 REVERSE LENGTH=808;; (*ITAG) Solyc10g081900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62163625-62169893 transcript_region:SL2.40ch10:62163625..62169893- go_terms:GO:0009058 functional_description:"Digalactosyldiacylglycerol synthase 1, chloroplastic (AHRD V1 ***- DGDG1_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00028844g0005.1 protein AED:0.09 eAED:0.09 QI:31|0.83|0.84|1|0.83|0.73|19|344|618; (*GB) gi|255573673|ref|XP_002527758.1| (e_value=0.0) phd finger protein, putative [Ricinus communis];; (*SWP) sp|P0CB22|ATX2_ARATH (e_value=0.0) Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1;; (*TAIR) AT1G05830.2 (e_value=0.0) | Symbols: ATX2 | trithorax-like protein 2 | chr1:1754452-1761225 FORWARD LENGTH=1083;; (*ITAG) Solyc09g098260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67394374-67404945 transcript_region:SL2.40ch09:67394374..67404945+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- A9RXF6_PHYPA); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0008270 NbS00004576g0013.1 protein AED:0.15 eAED:0.18 QI:63|0.33|0.5|1|0.33|0.5|4|0|236; (*GB) gi|400750|sp|Q02200.1|PERX_NICSY (e_value=6e-83) RecName: Full=Lignin-forming anionic peroxidase; Flags: Precursor;; (*SWP) sp|Q02200|PERX_NICSY (e_value=2e-84) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=1e-50) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=9e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00004576g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|359482319|ref|XP_002283339.2| (e_value=4e-27) PREDICTED: UPF0481 protein At3g47200-like [Vitis vinifera];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=6e-22) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT2G36430.1 (e_value=3e-23) | Symbols: | Plant protein of unknown function (DUF247) | chr2:15290211-15291557 FORWARD LENGTH=448;; (*ITAG) Solyc04g008910.1.1 (e_value=2e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2519306-2528011 transcript_region:SL2.40ch04:2519306..2528011- functional_description:"Fgenesh protein 60 (AHRD V1 *--- Q1ZY19_BETVU); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00004576g0015.1 protein AED:0.32 eAED:0.32 QI:96|1|1|1|0.83|0.76|13|404|342; (*GB) gi|225435907|ref|XP_002266954.1| (e_value=3e-172) PREDICTED: pseudouridine-5'-phosphate glycosidase [Vitis vinifera];; (*SWP) sp|C0ZIY1|PSUG_BREBN (e_value=5e-107) Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=psuG PE=3 SV=1;; (*TAIR) AT1G50510.1 (e_value=3e-168) | Symbols: | indigoidine synthase A family protein | chr1:18716578-18719060 FORWARD LENGTH=330;; (*ITAG) Solyc11g033260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:22911369-22918625 transcript_region:SL2.40ch11:22911369..22918625- functional_description:"Pseudouridine-5&apos-phosphate glycosidase (AHRD V1 ***- A4SJG3_AERS4); contains Interpro domain(s) IPR007342 Indigoidine synthase A like protein "; NbS00004576g0006.1 protein AED:0.39 eAED:0.46 QI:0|0|0.25|1|1|1|4|514|86 NbS00020736g0008.1 protein AED:0.30 eAED:0.33 QI:0|0.8|0.83|1|0.4|0.5|6|274|160; (*GB) gi|296089317|emb|CBI39089.3| (e_value=9e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G06590.1 (e_value=1e-30) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2016713-2018744 FORWARD LENGTH=314;; (*ITAG) Solyc01g056990.2.1 (e_value=2e-94) genomic_reference:SL2.40ch01 gene_region:50768621-50781621 transcript_region:SL2.40ch01:50768621..50781621+ functional_description:"Genomic DNA chromosome 5 BAC clone F15M7 (AHRD V1 ***- Q9FG11_ARATH)"; NbS00020736g0007.1 protein AED:0.36 eAED:0.37 QI:99|1|0.66|1|0.5|0.33|3|0|146; (*GB) gi|225439307|ref|XP_002266912.1| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100261551 [Vitis vinifera];; (*TAIR) AT5G06590.1 (e_value=4e-36) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2016713-2018744 FORWARD LENGTH=314;; (*ITAG) Solyc01g056990.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:50768621-50781621 transcript_region:SL2.40ch01:50768621..50781621+ functional_description:"Genomic DNA chromosome 5 BAC clone F15M7 (AHRD V1 ***- Q9FG11_ARATH)"; NbS00002874g0003.1 protein AED:0.21 eAED:0.21 QI:375|0.6|0.83|1|1|0.83|6|260|647; (*GB) gi|225445474|ref|XP_002281975.1| (e_value=0.0) PREDICTED: nitrate transporter 1.4-like [Vitis vinifera];; (*SWP) sp|Q9SZY4|PTR27_ARATH (e_value=0.0) Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1;; (*TAIR) AT2G26690.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577;; (*ITAG) Solyc01g096880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79634561-79638218 transcript_region:SL2.40ch01:79634561..79638218- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00002874g0011.1 protein AED:0.63 eAED:0.81 QI:0|0|0|0.66|1|1|3|0|111; (*GB) gi|255549024|ref|XP_002515568.1| (e_value=2e-50) heat shock protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G26890.1 (e_value=5e-45) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00010081g0018.1 protein AED:0.01 eAED:0.01 QI:146|1|1|1|1|1|3|432|557; (*GB) gi|225426682|ref|XP_002275215.1| (e_value=0.0) PREDICTED: guard cell S-type anion channel SLAC1 [Vitis vinifera];; (*SWP) sp|Q9LD83|SLAC1_ARATH (e_value=0.0) Guard cell S-type anion channel SLAC1 OS=Arabidopsis thaliana GN=SLAC1 PE=1 SV=1;; (*TAIR) AT1G12480.1 (e_value=0.0) | Symbols: OZS1, SLAC1, RCD3, CDI3 | C4-dicarboxylate transporter/malic acid transport protein | chr1:4257427-4259249 REVERSE LENGTH=556;; (*ITAG) Solyc08g079770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60418069-60420206 transcript_region:SL2.40ch08:60418069..60420206- go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7KND2_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00010081g0019.1 protein AED:0.06 eAED:0.06 QI:185|1|1|1|1|1|3|682|504; (*GB) gi|224074739|ref|XP_002304448.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQ10|1A110_ARATH (e_value=0.0) Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1;; (*TAIR) AT1G62960.1 (e_value=0.0) | Symbols: ACS10 | ACC synthase 10 | chr1:23318271-23320229 REVERSE LENGTH=557;; (*ITAG) Solyc08g079750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60401804-60405384 transcript_region:SL2.40ch08:60401804..60405384- go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q6U5H3_ROSHC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0016847 NbS00010081g0021.1 protein AED:0.05 eAED:0.05 QI:259|1|1|1|0.52|0.61|18|68|494; (*GB) gi|359474056|ref|XP_002275095.2| (e_value=4e-158) PREDICTED: uncharacterized protein LOC100242735 [Vitis vinifera];; (*TAIR) AT4G22860.1 (e_value=8e-103) | Symbols: | Cell cycle regulated microtubule associated protein | chr4:11997735-12001281 FORWARD LENGTH=509;; (*ITAG) Solyc08g079760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60411766-60417502 transcript_region:SL2.40ch08:60411766..60417502+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010081g0025.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|224071627|ref|XP_002303545.1| (e_value=3e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|P00302|STEL_TOXVR (e_value=2e-16) Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1;; (*TAIR) AT3G17675.1 (e_value=1e-18) | Symbols: | Cupredoxin superfamily protein | chr3:6042244-6042781 REVERSE LENGTH=106;; (*ITAG) Solyc08g079780.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60422340-60422963 transcript_region:SL2.40ch08:60422340..60422963+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00010081g0022.1 protein AED:0.13 eAED:0.13 QI:31|1|0.5|1|1|1|2|0|882; (*GB) gi|224071617|ref|XP_002303543.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGE4|Y1124_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1;; (*TAIR) AT1G12460.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:4247703-4250444 FORWARD LENGTH=882;; (*ITAG) Solyc08g079740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60398063-60401307 transcript_region:SL2.40ch08:60398063..60401307+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00016693g0002.1 protein AED:0.04 eAED:0.04 QI:0|0.83|0.57|1|1|0.85|7|467|297; (*GB) gi|255582265|ref|XP_002531924.1| (e_value=2e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G16610.1 (e_value=4e-76) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5445068-5447665 REVERSE LENGTH=529;; (*ITAG) Solyc11g011070.1.1 (e_value=5e-80) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4151926-4157337 transcript_region:SL2.40ch11:4151926..4157337- functional_description:"Genomic DNA chromosome 5 P1 clone MTG13 (AHRD V1 *--- Q9FMD6_ARATH)"; NbS00028183g0001.1 protein AED:0.17 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|193527444|gb|ACF19787.1| (e_value=5e-33) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc03g062670.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:29295085-29295933 transcript_region:SL2.40ch03:29295085..29295933+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IDF8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012566g0007.1 protein AED:0.23 eAED:0.24 QI:0|0.92|0.80|1|0.84|0.84|26|0|1162; (*GB) gi|225454832|ref|XP_002275116.1| (e_value=0.0) PREDICTED: protein TOPLESS [Vitis vinifera];; (*SWP) sp|Q94AI7|TPL_ARATH (e_value=0.0) Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1;; (*TAIR) AT1G15750.4 (e_value=0.0) | Symbols: WSIP1, TPL | Transducin family protein / WD-40 repeat family protein | chr1:5415086-5420359 REVERSE LENGTH=1131;; (*ITAG) Solyc08g076030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57249958-57263604 transcript_region:SL2.40ch08:57249958..57263604- go_terms:GO:0042803,GO:0016564 functional_description:"WD-40 repeat protein (AHRD V1 *--- C7RS72_ACCPU); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00034968g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|125987960|dbj|BAF47120.1| (e_value=2e-70) translationally controlled tumor protein like protein [Nicotiana tabacum];; (*SWP) sp|Q9XHL7|TCTP_TOBAC (e_value=3e-71) Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1;; (*TAIR) AT3G16640.1 (e_value=5e-54) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=4e-59) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00034968g0001.1 protein AED:0.19 eAED:0.20 QI:659|1|0.66|1|0|0.33|3|0|172; (*GB) gi|225425368|ref|XP_002270226.1| (e_value=1e-40) PREDICTED: squamosa promoter-binding-like protein 16 [Vitis vinifera];; (*ITAG) Solyc05g015840.2.1 (e_value=5e-62) genomic_reference:SL2.40ch05 gene_region:12394400-12397051 transcript_region:SL2.40ch05:12394400..12397051+ go_terms:GO:0005634 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B2_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00034968g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|120 NbS00016291g0001.1 protein AED:0.18 eAED:0.18 QI:403|0.95|0.95|1|0.95|0.90|21|396|572; (*GB) gi|225444959|ref|XP_002282458.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera];; (*SWP) sp|Q9ZUN3|KEA4_ARATH (e_value=0.0) K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2;; (*TAIR) AT2G19600.1 (e_value=0.0) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc07g026670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:30206942-30221961 transcript_region:SL2.40ch07:30206942..30221961+ go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 **** Q46EP4_METBF); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00016291g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.2|0.8|0.75|0.8|5|472|160; (*GB) gi|297738688|emb|CBI27933.3| (e_value=4e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=2e-56) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT5G56790.1 (e_value=3e-74) | Symbols: | Protein kinase superfamily protein | chr5:22968610-22971391 FORWARD LENGTH=669;; (*ITAG) Solyc07g027020.2.1 (e_value=1e-84) genomic_reference:SL2.40ch07 gene_region:33214854-33219582 transcript_region:SL2.40ch07:33214854..33219582- go_terms:GO:0005840,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005840,GO:0006468 NbS00016291g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.66|1|0|0|3|205|159; (*GB) gi|351721742|ref|NP_001235940.1| (e_value=4e-35) MYB transcription factor MYB127 [Glycine max];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=9e-24) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G47390.1 (e_value=3e-31) | Symbols: | myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365;; (*ITAG) Solyc07g026680.2.1 (e_value=3e-37) genomic_reference:SL2.40ch07 gene_region:30225245-30226244 transcript_region:SL2.40ch07:30225245..30226244- go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 **** Q7XC57_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00037385g0004.1 protein AED:0.10 eAED:0.10 QI:267|1|1|1|0.83|0.71|7|465|249; (*GB) gi|225424250|ref|XP_002284485.1| (e_value=1e-144) PREDICTED: uncharacterized protein LOC100249059 [Vitis vinifera];; (*TAIR) AT1G23110.4 (e_value=2e-133) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1). | chr1:8196608-8197665 REVERSE LENGTH=248;; (*ITAG) Solyc04g007730.2.1 (e_value=3e-166) genomic_reference:SL2.40ch04 gene_region:1405640-1410539 transcript_region:SL2.40ch04:1405640..1410539- functional_description:"Unknown Protein (AHRD V1)"; NbS00016755g0002.1 protein AED:0.13 eAED:0.15 QI:0|0|0|1|1|1|2|0|347; (*GB) gi|325463083|gb|ADZ15315.1| (e_value=1e-109) DREB2 [Solanum lycopersicum];; (*SWP) sp|O82132|DRE2A_ARATH (e_value=2e-37) Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1;; (*TAIR) AT5G05410.1 (e_value=2e-38) | Symbols: DREB2A, DREB2 | DRE-binding protein 2A | chr5:1602650-1603657 FORWARD LENGTH=335;; (*ITAG) Solyc05g052410.1.1 (e_value=6e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61781895-61783094 transcript_region:SL2.40ch05:61781895..61783094+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00044516g0007.1 protein AED:0.07 eAED:0.10 QI:0|0|0.25|1|0.33|0.25|4|0|857; (*GB) gi|359497290|ref|XP_002268807.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Vitis vinifera];; (*SWP) sp|Q9M2Y7|PP274_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1;; (*TAIR) AT3G49710.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18437845-18440010 FORWARD LENGTH=721;; (*ITAG) Solyc01g102690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83186277-83189733 transcript_region:SL2.40ch01:83186277..83189733+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LSX0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00007465g0004.1 protein AED:0.58 eAED:0.58 QI:9|0|0.5|0.5|0|0|2|105|81 NbS00007465g0007.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.5|0|0.25|4|0|114 NbS00007465g0005.1 protein AED:0.42 eAED:0.68 QI:0|0|0|1|0|0|3|0|143; (*ITAG) Solyc01g108640.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00007465g0006.1 protein AED:0.45 eAED:0.71 QI:0|0|0|1|0|0|2|0|76 NbS00027059g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.4|0.16|0.5|0.6|0.66|6|0|267; (*GB) gi|302142083|emb|CBI19286.3| (e_value=6e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=2e-86) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc04g076540.2.1 (e_value=4e-107) genomic_reference:SL2.40ch04 gene_region:59021459-59037413 transcript_region:SL2.40ch04:59021459..59037413- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00039964g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|0|0.33|3|256|98; (*GB) gi|118137433|pdb|2CJJ|A (e_value=1e-30) Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus;; (*TAIR) AT1G75250.1 (e_value=5e-28) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc10g052470.1.1 (e_value=8e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48253343-48253609 transcript_region:SL2.40ch10:48253343..48253609+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00039964g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|193; (*GB) gi|225428428|ref|XP_002283905.1| (e_value=1e-79) PREDICTED: protein RER1B [Vitis vinifera];; (*SWP) sp|O48671|RER1B_ARATH (e_value=2e-75) Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2;; (*TAIR) AT2G21600.1 (e_value=1e-76) | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195;; (*ITAG) Solyc01g109770.2.1 (e_value=4e-96) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00033464g0005.1 protein AED:0.17 eAED:0.17 QI:120|1|1|1|1|1|10|451|437; (*GB) gi|224063858|ref|XP_002301292.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y4P3|TBL2_HUMAN (e_value=2e-38) Transducin beta-like protein 2 OS=Homo sapiens GN=TBL2 PE=1 SV=1;; (*TAIR) AT4G00090.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:34234-36594 FORWARD LENGTH=430;; (*ITAG) Solyc01g091310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76711331-76720741 transcript_region:SL2.40ch01:76711331..76720741+ go_terms:GO:0005515,GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IZJ6_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00033464g0006.1 protein AED:0.19 eAED:0.19 QI:404|1|1|1|1|1|5|218|301; (*GB) gi|357477023|ref|XP_003608797.1| (e_value=2e-149) Sterol-4-methyl-oxidase [Medicago truncatula];; (*SWP) sp|Q8L7W5|SMO11_ARATH (e_value=4e-145) Methylsterol monooxygenase 1-1 OS=Arabidopsis thaliana GN=SMO1-1 PE=1 SV=1;; (*TAIR) AT4G12110.1 (e_value=3e-146) | Symbols: SMO1-1, ATSMO1, ATSMO1-1 | sterol-4alpha-methyl oxidase 1-1 | chr4:7254197-7256004 FORWARD LENGTH=298;; (*ITAG) Solyc01g091320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76721907-76724984 transcript_region:SL2.40ch01:76721907..76724984- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00004401g0016.1 protein AED:0.24 eAED:0.24 QI:95|0.92|0.92|1|0.69|0.78|14|214|685; (*GB) gi|225451551|ref|XP_002274130.1| (e_value=0.0) PREDICTED: acyltransferase-like protein At1g54570, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LW26|Y3684_ARATH (e_value=0.0) Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=1 SV=1;; (*TAIR) AT5G41130.1 (e_value=0.0) | Symbols: | Esterase/lipase/thioesterase family protein | chr5:16459714-16463241 REVERSE LENGTH=688;; (*ITAG) Solyc02g094430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49531353-49539751 transcript_region:SL2.40ch02:49531353..49539751- go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0003824 NbS00004401g0004.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|357508297|ref|XP_003624437.1| (e_value=9e-12) Zinc finger protein [Medicago truncatula];; (*TAIR) AT5G14010.1 (e_value=7e-14) | Symbols: KNU | C2H2 and C2HC zinc fingers superfamily protein | chr5:4522260-4522745 FORWARD LENGTH=161;; (*ITAG) Solyc00g014800.1.1 (e_value=5e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:11060181-11060672 transcript_region:SL2.40ch00:11060181..11060672- go_terms:GO:0005622 functional_description:"Zinc-finger protein 1 (AHRD V1 *-*- D7KX25_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00004401g0008.1 protein AED:0.29 eAED:0.29 QI:90|0.9|0.90|1|0.9|0.81|11|425|283; (*GB) gi|225451543|ref|XP_002273840.1| (e_value=2e-99) PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q00497|AROK_SOLLC (e_value=2e-35) Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G26900.3 (e_value=1e-84) | Symbols: SKL1, ATSKL1 | shikimate kinase like 1 | chr3:9912314-9914424 REVERSE LENGTH=280;; (*ITAG) Solyc02g094420.2.1 (e_value=1e-135) genomic_reference:SL2.40ch02 gene_region:49525946-49527782 transcript_region:SL2.40ch02:49525946..49527782+ go_terms:GO:0005524 functional_description:"Shikimate kinase (AHRD V1 ***- B9N0W2_POPTR); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005524 NbS00004401g0017.1 protein AED:0.31 eAED:0.31 QI:91|1|1|1|0.75|0.6|5|235|202; (*GB) gi|82623435|gb|ABB87132.1| (e_value=5e-90) translocon-associated protein beta family protein-like [Solanum tuberosum];; (*TAIR) AT5G14030.4 (e_value=3e-62) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc02g094440.2.1 (e_value=1e-92) genomic_reference:SL2.40ch02 gene_region:49544950-49547808 transcript_region:SL2.40ch02:49544950..49547808+ go_terms:GO:0016021 functional_description:"Translocon-associated protein subunit beta (AHRD V1 ***- C1C3L8_RANCA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0016021 NbS00004401g0019.1 protein AED:0.40 eAED:0.46 QI:0|0.22|0.2|0.8|1|0.9|10|0|626; (*GB) gi|296082302|emb|CBI21307.3| (e_value=3e-148) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22799|Y2349_ARATH (e_value=2e-79) Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2;; (*TAIR) AT2G33490.1 (e_value=2e-80) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623;; (*ITAG) Solyc02g094410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49518515-49525760 transcript_region:SL2.40ch02:49518515..49525760+ functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7LGA9_ARALY)"; NbS00006857g0012.1 protein AED:0.14 eAED:0.14 QI:186|1|1|1|0|0|4|961|43 NbS00006857g0015.1 protein AED:0.25 eAED:0.25 QI:186|1|1|1|0.4|0.66|6|275|253; (*GB) gi|315258239|gb|ADT91698.1| (e_value=1e-180) mitogen activated protein kinase kinase [Nicotiana attenuata];; (*SWP) sp|Q9FJV0|M2K6_ARATH (e_value=6e-160) Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1;; (*TAIR) AT5G56580.1 (e_value=4e-161) | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase 6 | chr5:22904851-22906620 REVERSE LENGTH=356;; (*ITAG) Solyc03g119490.2.1 (e_value=3e-174) genomic_reference:SL2.40ch03 gene_region:62138086-62141226 transcript_region:SL2.40ch03:62138086..62141226+ go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00043898g0004.1 protein AED:0.20 eAED:0.20 QI:312|0.87|0.77|0.88|0.87|0.77|9|0|604; (*GB) gi|169977330|emb|CAQ18912.1| (e_value=0.0) domains rearranged methyltransferase [Nicotiana sylvestris];; (*SWP) sp|Q9M548|DRM2_ARATH (e_value=0.0) DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1;; (*TAIR) AT5G14620.1 (e_value=0.0) | Symbols: DRM2, DMT7 | domains rearranged methyltransferase 2 | chr5:4715429-4718578 REVERSE LENGTH=626;; (*ITAG) Solyc02g062740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00057938g0002.1 protein AED:0.03 eAED:0.03 QI:73|1|1|1|0.77|0.7|10|773|398; (*GB) gi|356510074|ref|XP_003523765.1| (e_value=0.0) PREDICTED: 26S protease regulatory subunit S10B homolog B-like isoform 1 [Glycine max];; (*SWP) sp|Q9MAK9|PS10B_ARATH (e_value=0.0) 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1;; (*TAIR) AT1G45000.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399;; (*ITAG) Solyc01g109940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00027273g0009.1 protein AED:0.27 eAED:0.27 QI:47|0.84|0.78|0.85|0.84|0.92|14|276|317; (*GB) gi|225447239|ref|XP_002278442.1| (e_value=6e-142) PREDICTED: secretory carrier-associated membrane protein 3 [Vitis vinifera];; (*SWP) sp|Q7F613|SCAM2_ORYSJ (e_value=3e-131) Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=1e-130) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc07g054490.2.1 (e_value=3e-176) genomic_reference:SL2.40ch07 gene_region:60121580-60126895 transcript_region:SL2.40ch07:60121580..60126895- go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00027273g0010.1 protein AED:0.31 eAED:0.31 QI:282|0.75|0.76|1|0.43|0.47|17|0|670; (*GB) gi|155008464|gb|ABS89271.1| (e_value=0.0) LRR receptor-like kinase [Solanum tuberosum];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=0.0) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc07g054500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60127645-60138369 transcript_region:SL2.40ch07:60127645..60138369- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00052306g0003.1 protein AED:0.12 eAED:0.12 QI:80|1|0.5|1|1|1|2|0|486; (*GB) gi|147819856|emb|CAN71816.1| (e_value=4e-166) hypothetical protein VITISV_023421 [Vitis vinifera];; (*SWP) sp|Q9FZ24|PPR4_ARATH (e_value=3e-84) Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1;; (*TAIR) AT1G02370.1 (e_value=2e-85) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:474516-476383 FORWARD LENGTH=537;; (*ITAG) Solyc01g100580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82326836-82329906 transcript_region:SL2.40ch01:82326836..82329906+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB79_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021677g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|193; (*GB) gi|297742542|emb|CBI34691.3| (e_value=7e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SH27|LOR4_ARATH (e_value=5e-42) Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1;; (*TAIR) AT1G63410.1 (e_value=2e-43) | Symbols: | Protein of unknown function (DUF567) | chr1:23510075-23511997 REVERSE LENGTH=208;; (*ITAG) Solyc08g007980.2.1 (e_value=7e-106) genomic_reference:SL2.40ch08 gene_region:2480024-2481880 transcript_region:SL2.40ch08:2480024..2481880- functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00032608g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.6|1|1|1|5|243|269; (*GB) gi|151347473|gb|ABS01349.1| (e_value=2e-152) hypersensitive-induced response protein [Carica papaya];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=3e-150) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=3e-151) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc02g067470.2.1 (e_value=8e-156) genomic_reference:SL2.40ch02 gene_region:32239857-32243351 transcript_region:SL2.40ch02:32239857..32243351- go_terms:GO:0005515 functional_description:"SPFH domain / Band 7 family protein (AHRD V1 **-- Q6L4B0_SOLDE); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00041960g0004.1 protein AED:0.14 eAED:0.15 QI:77|1|0.66|1|0.2|0.33|6|0|414; (*GB) gi|255568946|ref|XP_002525443.1| (e_value=4e-170) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=6e-53) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G04030.3 (e_value=7e-122) | Symbols: | Homeodomain-like superfamily protein | chr3:1042920-1044574 REVERSE LENGTH=394;; (*ITAG) Solyc10g083340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62499912-62502205 transcript_region:SL2.40ch10:62499912..62502205+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00003687g0004.1 protein AED:0.41 eAED:0.41 QI:75|0.5|0.66|0.66|0|0|3|0|33 NbS00003687g0003.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|1|1|3|0|59 NbS00003687g0107.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|251 NbS00003687g0106.1 protein AED:0.08 eAED:0.08 QI:303|1|0.75|1|1|1|4|356|418 NbS00029964g0007.1 protein AED:0.19 eAED:0.19 QI:109|0.25|0.4|0.8|0.75|0.4|5|320|829; (*GB) gi|255538432|ref|XP_002510281.1| (e_value=2e-164) Protein Z, putative [Ricinus communis];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=4e-152) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=3e-153) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61543950-61545698 transcript_region:SL2.40ch04:61543950..61545698- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00049996g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|84; (*ITAG) Solyc06g053990.1.1 (e_value=9e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33355564-33355764 transcript_region:SL2.40ch06:33355564..33355764+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024150g0003.1 protein AED:0.04 eAED:0.04 QI:360|1|0.93|1|1|1|15|641|739; (*GB) gi|359475913|ref|XP_002272679.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254265 [Vitis vinifera];; (*SWP) sp|P40234|CKI2_SCHPO (e_value=2e-55) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2;; (*TAIR) AT2G25760.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr2:10985118-10988652 REVERSE LENGTH=673;; (*ITAG) Solyc12g095830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63287600-63291851 transcript_region:SL2.40ch12:63287600..63291851+ go_terms:GO:0006468 functional_description:"Casein kinase I (AHRD V1 ***- D8V7I8_SESIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003583g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|4|224|509; (*GB) gi|38604717|sp|Q42881.1|1A13_SOLLC (e_value=0.0) RecName: Full=1-aminocyclopropane-1-carboxylate synthase 3; Short=ACC synthase 3; AltName: Full=Le-ACS3; Short=ACS-3; AltName: Full=S-adenosyl-L-methionine methylthioadenosine-lyase 3;; (*SWP) sp|Q42881|1A13_SOLLC (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=0.0) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc02g091990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47786604-47788405 transcript_region:SL2.40ch02:47786604..47788405- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00026523g0008.1 protein AED:0.23 eAED:0.23 QI:124|0.87|1|1|0.75|0.88|9|247|387; (*GB) gi|350538981|ref|NP_001234368.1| (e_value=0.0) D-cysteine desulfhydrase [Solanum lycopersicum];; (*SWP) sp|O57809|1A1D_PYRHO (e_value=3e-55) Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2;; (*TAIR) AT1G48420.1 (e_value=6e-174) | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulfhydrase | chr1:17896767-17898803 REVERSE LENGTH=401;; (*ITAG) Solyc03g098230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54032356-54043045 transcript_region:SL2.40ch03:54032356..54043045+ go_terms:GO:0019148,GO:0005515 functional_description:"Pyridoxal phosphate-dependent enzyme D-cysteine desulfhydrase family (AHRD V1 **** D0LXJ6_HALO1); contains Interpro domain(s) IPR005966 Pyridoxal phosphate-dependent deaminase "; GO:0019148,GO:0005515 NbS00026523g0009.1 protein AED:0.23 eAED:0.26 QI:0|0|0|0.83|0.2|0|6|0|348; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-44) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=2e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026523g0010.1 protein AED:0.60 eAED:0.62 QI:0|0|0|1|0|0.5|2|0|70; (*ITAG) Solyc09g008110.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026523g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.91|1|1|1|12|576|455; (*GB) gi|195547035|dbj|BAG68298.1| (e_value=0.0) serine palmitoyltransferase [Nicotiana benthamiana];; (*SWP) sp|P97363|SPTC2_MOUSE (e_value=2e-151) Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2;; (*TAIR) AT5G23670.2 (e_value=0.0) | Symbols: LCB2 | long chain base2 | chr5:7981889-7985037 FORWARD LENGTH=489;; (*ITAG) Solyc03g098220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54022399-54028329 transcript_region:SL2.40ch03:54022399..54028329- go_terms:GO:0004758 functional_description:"Serine palmitoyltransferase (AHRD V1 **-* B3Y000_NICBE); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004758 NbC25060269g0004.1 protein AED:0.36 eAED:0.51 QI:0|0.5|0.33|1|1|1|3|0|66; (*GB) gi|296086416|emb|CBI32005.3| (e_value=4e-29) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42745|UBC2_ARATH (e_value=2e-30) Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=2e-31) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00012709g0001.1 protein AED:0.01 eAED:0.01 QI:14|0|0.5|1|0|0.5|2|301|225; (*GB) gi|365222876|gb|AEW69790.1| (e_value=1e-77) Hop-interacting protein THI026 [Solanum lycopersicum];; (*SWP) sp|P30188|CML35_ARATH (e_value=3e-42) Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2;; (*TAIR) AT2G41410.1 (e_value=2e-43) | Symbols: | Calcium-binding EF-hand family protein | chr2:17262085-17262735 REVERSE LENGTH=216;; (*ITAG) Solyc04g018110.1.1 (e_value=2e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:9603164-9603892 transcript_region:SL2.40ch04:9603164..9603892+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein 1 (AHRD V1 *-*- B4FRR5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00012709g0007.1 protein AED:0.08 eAED:0.08 QI:32|0.77|0.8|1|1|1|10|0|447; (*GB) gi|225441345|ref|XP_002274624.1| (e_value=4e-106) PREDICTED: uncharacterized protein LOC100245305 [Vitis vinifera];; (*TAIR) AT2G41450.2 (e_value=4e-83) | Symbols: | N-acetyltransferases;N-acetyltransferases | chr2:17278670-17281637 FORWARD LENGTH=549;; (*ITAG) Solyc04g017650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7719041-7726013 transcript_region:SL2.40ch04:7719041..7726013- go_terms:GO:0008152,GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_RAT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008152,GO:0005622 NbS00012709g0002.1 protein AED:0.11 eAED:0.24 QI:0|1|0.66|1|0|0|3|413|753; (*GB) gi|359481896|ref|XP_002274379.2| (e_value=0.0) PREDICTED: putative COX1/OXI3 intron 2 protein-like [Vitis vinifera];; (*SWP) sp|P03876|AI2M_YEAST (e_value=2e-15) Putative COX1/OXI3 intron 2 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=aI2 PE=1 SV=2;; (*TAIR) AT5G04050.1 (e_value=0.0) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase) | chr5:1096092-1097894 FORWARD LENGTH=600;; (*ITAG) Solyc03g033520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9344333-9346934 transcript_region:SL2.40ch03:9344333..9346934+ functional_description:"Maturase (Fragment) (AHRD V1 *-*- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00013037g0018.1 protein AED:0.10 eAED:0.10 QI:264|0.9|0.90|1|0.7|0.45|11|574|673; (*GB) gi|255566464|ref|XP_002524217.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|O22285|PMTB_ARATH (e_value=0.0) Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1;; (*TAIR) AT2G39750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16578986-16582281 REVERSE LENGTH=694;; (*ITAG) Solyc05g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62285580-62291311 transcript_region:SL2.40ch05:62285580..62291311+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00013037g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|0.75|0.66|1|4|441|260; (*GB) gi|359486610|ref|XP_002277771.2| (e_value=3e-64) PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera];; (*TAIR) AT2G39740.1 (e_value=4e-40) | Symbols: | Nucleotidyltransferase family protein | chr2:16576250-16578704 FORWARD LENGTH=511;; (*ITAG) Solyc06g051790.2.1 (e_value=1e-125) genomic_reference:SL2.40ch06 gene_region:31945112-31946322 transcript_region:SL2.40ch06:31945112..31946322+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013037g0017.1 protein AED:0.32 eAED:0.34 QI:469|0.66|0.57|0.85|0.5|0.71|7|0|288; (*GB) gi|255566462|ref|XP_002524216.1| (e_value=9e-107) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O74326|CID11_SCHPO (e_value=9e-19) Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid11 PE=2 SV=1;; (*TAIR) AT2G39740.1 (e_value=2e-89) | Symbols: | Nucleotidyltransferase family protein | chr2:16576250-16578704 FORWARD LENGTH=511;; (*ITAG) Solyc06g051780.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:31930214-31946130 transcript_region:SL2.40ch06:31930214..31946130+ go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase (AHRD V1 **-- B6K2B5_SCHJY); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0016779 NbS00019045g0006.1 protein AED:0.00 eAED:0.00 QI:186|1|1|1|0.5|0.66|3|269|178; (*GB) gi|295918077|gb|ADG60257.1| (e_value=8e-92) IAA19-like protein [Nicotiana tabacum];; (*SWP) sp|P13088|AUX22_SOYBN (e_value=1e-60) Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1;; (*TAIR) AT3G15540.1 (e_value=4e-49) | Symbols: IAA19, MSG2 | indole-3-acetic acid inducible 19 | chr3:5264100-5265378 FORWARD LENGTH=197;; (*ITAG) Solyc03g120380.2.1 (e_value=8e-71) genomic_reference:SL2.40ch03 gene_region:62855821-62857611 transcript_region:SL2.40ch03:62855821..62857611+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00048621g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.81|1|0.7|0.81|11|386|599; (*GB) gi|225434243|ref|XP_002280371.1| (e_value=0.0) PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=0.0) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.1 (e_value=0.0) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=548;; (*ITAG) Solyc12g017920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7785524-7801666 transcript_region:SL2.40ch12:7785524..7801666- go_terms:GO:0004649 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-** Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0004649 NbS00048621g0005.1 protein AED:0.03 eAED:0.03 QI:44|1|0.5|1|1|1|2|0|89; (*GB) gi|33312438|gb|AAQ04061.1| (e_value=2e-41) 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum];; (*ITAG) Solyc12g096590.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63783509-63787350 transcript_region:SL2.40ch12:63783509..63787350- go_terms:GO:0009349 functional_description:"6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 ***- B2CM14_SOLCH); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase "; GO:0009349 NbS00012431g0008.1 protein AED:0.06 eAED:0.24 QI:0|1|0|1|1|1|2|0|804; (*GB) gi|135670|sp|P14233.1|TGA1B_TOBAC (e_value=3e-152) RecName: Full=TGACG-sequence-specific DNA-binding protein TGA-1B; Short=TGA1b; AltName: Full=HSBF;; (*SWP) sp|P14233|TGA1B_TOBAC (e_value=9e-154) TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1;; (*TAIR) AT2G40950.1 (e_value=2e-116) | Symbols: BZIP17 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17087823-17090326 REVERSE LENGTH=721;; (*ITAG) Solyc10g078290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59445485-59447849 transcript_region:SL2.40ch10:59445485..59447849- go_terms:GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- Q677A7_HYAOR); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00012431g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|0.5|0.33|3|0|456; (*GB) gi|255556888|ref|XP_002519477.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|P98188|C94A2_VICSA (e_value=2e-110) Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1;; (*TAIR) AT3G56630.1 (e_value=3e-176) | Symbols: CYP94D2 | cytochrome P450, family 94, subfamily D, polypeptide 2 | chr3:20978953-20980512 FORWARD LENGTH=499;; (*ITAG) Solyc10g078280.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:59443442-59445860 transcript_region:SL2.40ch10:59443442..59445860+ go_terms:GO:0019825 functional_description:"Cytochrome P450 gene"; GO:0019825 NbS00012431g0004.1 protein AED:0.25 eAED:0.32 QI:0|0|0|1|1|1|2|0|410; (*GB) gi|224107681|ref|XP_002314561.1| (e_value=1e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=7e-39) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=5e-45) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc06g051320.2.1 (e_value=6e-34) genomic_reference:SL2.40ch06 gene_region:31052523-31054682 transcript_region:SL2.40ch06:31052523..31054682+ go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00009143g0001.1 protein AED:0.06 eAED:0.15 QI:0|0|0|1|1|1|2|0|276; (*GB) gi|76573333|gb|ABA46771.1| (e_value=2e-106) unknown [Solanum tuberosum];; (*SWP) sp|Q9M354|AGD6_ARATH (e_value=7e-93) Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1;; (*TAIR) AT3G53710.2 (e_value=5e-94) | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-19905419 REVERSE LENGTH=459;; (*ITAG) Solyc10g084690.1.1 (e_value=3e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63448012-63451193 transcript_region:SL2.40ch10:63448012..63451193+ go_terms:GO:0032312 functional_description:"ADP-ribosylation factor GTPase activating protein 1 (AHRD V1 *--- Q0V8A7_BOVIN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbS00009143g0004.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|1|1|3|0|369; (*GB) gi|224089086|ref|XP_002308631.1| (e_value=2e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL95|MOT1_ARATH (e_value=2e-139) Molybdate transporter 1 OS=Arabidopsis thaliana GN=MOT1 PE=1 SV=1;; (*TAIR) AT2G25680.1 (e_value=1e-140) | Symbols: MOT1 | molybdate transporter 1 | chr2:10933167-10934537 REVERSE LENGTH=456;; (*ITAG) Solyc10g084680.1.1 (e_value=3e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63445310-63446671 transcript_region:SL2.40ch10:63445310..63446671+ go_terms:GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- D7LBF8_ARALY); contains Interpro domain(s) IPR011547 Sulphate transporter "; GO:0016021 NbS00009143g0002.1 protein AED:0.33 eAED:0.34 QI:0|0.42|0.37|1|1|1|8|0|494; (*GB) gi|6685538|sp|Q40554.1|EIF3A_TOBAC (e_value=5e-112) RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta;; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=1e-113) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1;; (*TAIR) AT4G11420.1 (e_value=1e-99) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987;; (*ITAG) Solyc10g084670.1.1 (e_value=5e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63434821-63441149 transcript_region:SL2.40ch10:63434821..63441149+ functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- C0H9S0_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbS00009143g0014.1 protein AED:0.50 eAED:0.60 QI:0|0.66|0.25|0.75|1|1|4|0|252; (*GB) gi|6685538|sp|Q40554.1|EIF3A_TOBAC (e_value=1e-38) RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta;; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=3e-40) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1;; (*TAIR) AT4G11420.1 (e_value=3e-32) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987;; (*ITAG) Solyc09g010460.2.1 (e_value=8e-42) genomic_reference:SL2.40ch09 gene_region:3817371-3827369 transcript_region:SL2.40ch09:3817371..3827369+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- Q24JU4_HUMAN); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbC24406826g0002.1 protein AED:0.01 eAED:0.03 QI:3|0|0.5|1|1|1|2|0|111; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=5e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=7e-33) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=5e-34) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g072480.2.1 (e_value=1e-66) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00030675g0001.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|0|0|2|77|344; (*GB) gi|225459338|ref|XP_002284195.1| (e_value=2e-112) PREDICTED: F-box protein At1g78100-like [Vitis vinifera];; (*SWP) sp|Q9C9S2|FB91_ARATH (e_value=7e-101) F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1 SV=1;; (*TAIR) AT1G78100.1 (e_value=5e-102) | Symbols: | F-box family protein | chr1:29387907-29388911 FORWARD LENGTH=334;; (*ITAG) Solyc04g072930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57525979-57527001 transcript_region:SL2.40ch04:57525979..57527001+ functional_description:"F-box family protein (AHRD V1 ***- D7KV76_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00010010g0008.1 protein AED:0.08 eAED:0.14 QI:0|0.66|0.25|1|0.33|0.25|4|0|181; (*GB) gi|255574952|ref|XP_002528382.1| (e_value=2e-73) GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis];; (*TAIR) AT4G30550.1 (e_value=9e-55) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr4:14925618-14926713 FORWARD LENGTH=249;; (*ITAG) Solyc07g006090.1.1 (e_value=5e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:942872-945412 transcript_region:SL2.40ch07:942872..945412+ go_terms:GO:0003824 functional_description:"GMP synthase (AHRD V1 ***- B9SQW3_RICCO); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0003824 NbS00010010g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.42|0.57|0.66|0.57|7|0|165; (*GB) gi|357463511|ref|XP_003602037.1| (e_value=4e-34) RING finger protein [Medicago truncatula];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=6e-23) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT3G47180.1 (e_value=5e-34) | Symbols: | RING/U-box superfamily protein | chr3:17372821-17373453 REVERSE LENGTH=210;; (*ITAG) Solyc12g010500.1.1 (e_value=4e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3509143-3510865 transcript_region:SL2.40ch12:3509143..3510865+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00002528g0007.1 protein AED:0.02 eAED:0.02 QI:63|1|0.66|1|1|1|3|0|186; (*GB) gi|388517463|gb|AFK46793.1| (e_value=6e-30) unknown [Lotus japonicus];; (*TAIR) AT3G22600.1 (e_value=2e-23) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g065430.2.1 (e_value=1e-51) genomic_reference:SL2.40ch09 gene_region:59128953-59130177 transcript_region:SL2.40ch09:59128953..59130177- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9NBN9_POPTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00002528g0008.1 protein AED:0.09 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|258; (*GB) gi|255567552|ref|XP_002524755.1| (e_value=2e-31) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G48140.1 (e_value=1e-26) | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687444 FORWARD LENGTH=200;; (*ITAG) Solyc09g065440.2.1 (e_value=3e-68) genomic_reference:SL2.40ch09 gene_region:59131289-59133090 transcript_region:SL2.40ch09:59131289..59133090+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00012426g0012.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|0.5|0.66|3|0|433; (*GB) gi|225429766|ref|XP_002280562.1| (e_value=2e-106) PREDICTED: uncharacterized protein LOC100267965 [Vitis vinifera];; (*TAIR) AT2G24530.1 (e_value=2e-85) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc03g117820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60892138-60893394 transcript_region:SL2.40ch03:60892138..60893394+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00012426g0010.1 protein AED:0.00 eAED:0.00 QI:281|1|1|1|1|1|2|630|94; (*GB) gi|224057190|ref|XP_002299164.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43150.1 (e_value=1e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17325076-17325689 FORWARD LENGTH=91;; (*ITAG) Solyc03g117840.2.1 (e_value=3e-50) genomic_reference:SL2.40ch03 gene_region:60899545-60902260 transcript_region:SL2.40ch03:60899545..60902260- functional_description:"Unknown Protein (AHRD V1)"; NbS00012426g0014.1 protein AED:0.19 eAED:0.19 QI:610|0.91|0.92|1|0.5|0.53|13|833|242; (*GB) gi|388517903|gb|AFK47013.1| (e_value=6e-134) unknown [Lotus japonicus];; (*SWP) sp|P93431|RCA_ORYSJ (e_value=3e-69) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2;; (*TAIR) AT1G73110.1 (e_value=1e-127) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27494344-27496844 REVERSE LENGTH=432;; (*ITAG) Solyc03g117850.2.1 (e_value=7e-152) genomic_reference:SL2.40ch03 gene_region:60921754-60930539 transcript_region:SL2.40ch03:60921754..60930539- go_terms:GO:0046863 functional_description:"Ribulose bisphosphate carboxylase/oxygenase activase (AHRD V1 **** B6T416_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0046863 NbS00000022g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|321; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=5e-124) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=2e-125) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=3e-90) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=6e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00000022g0007.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|0|2|0|98; (*GB) gi|82949444|dbj|BAE53383.1| (e_value=1e-26) beta-1,3-glucanase [Sesbania rostrata];; (*SWP) sp|P23547|E13G_TOBAC (e_value=1e-26) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT3G57240.1 (e_value=1e-21) | Symbols: BG3 | beta-1,3-glucanase 3 | chr3:21181916-21183045 REVERSE LENGTH=341;; (*ITAG) Solyc11g065290.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47762393-47764902 transcript_region:SL2.40ch11:47762393..47764902+ go_terms:GO:0005975 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9M563_VITVI); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00000022g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|85 NbS00000022g0006.1 protein AED:0.23 eAED:0.64 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|333805717|gb|AEF98449.1| (e_value=5e-30) BRANCHED1A isoform 1 [Solanum tuberosum];; (*SWP) sp|Q9SBV9|CYCLD_ANTMH (e_value=4e-23) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1;; (*TAIR) AT1G67260.2 (e_value=1e-22) | Symbols: TCP1 | TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351;; (*ITAG) Solyc03g119770.2.1 (e_value=5e-32) genomic_reference:SL2.40ch03 gene_region:62381910-62383042 transcript_region:SL2.40ch03:62381910..62383042+ functional_description:"CYCLOIDEA-like (Fragment) (AHRD V1 *-*- Q2TKW2_9DIPS); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00009036g0003.1 protein AED:0.29 eAED:0.29 QI:447|0.82|0.88|1|0.76|0.72|18|396|948; (*GB) gi|225434309|ref|XP_002276020.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT1G06840.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc09g055570.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:37798402-37814494 transcript_region:SL2.40ch09:37798402..37814494+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015649g0001.1 protein AED:0.10 eAED:0.11 QI:14|0.75|0.2|1|1|1|5|0|275; (*GB) gi|255575867|ref|XP_002528831.1| (e_value=2e-97) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9LW60|P2C44_ARATH (e_value=2e-54) Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1;; (*TAIR) AT3G23360.1 (e_value=1e-55) | Symbols: | Protein phosphatase 2C family protein | chr3:8355257-8356381 REVERSE LENGTH=260;; (*ITAG) Solyc09g090280.1.1 (e_value=5e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65157895-65160871 transcript_region:SL2.40ch09:65157895..65160871- go_terms:GO:0004722 functional_description:"Catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase (AHRD V1 **** B6TPM6_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00015649g0009.1 protein AED:0.08 eAED:0.08 QI:0|0.92|0.64|1|0.84|0.71|14|321|1292; (*GB) gi|359477748|ref|XP_002281562.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251059 [Vitis vinifera];; (*TAIR) AT5G43310.2 (e_value=0.0) | Symbols: | COP1-interacting protein-related | chr5:17379735-17385387 REVERSE LENGTH=1180;; (*ITAG) Solyc09g090270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65147358-65156634 transcript_region:SL2.40ch09:65147358..65156634+ functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *-*- Q7GDB1_ARATH)"; NbS00051812g0001.1 protein AED:0.42 eAED:0.74 QI:0|0|0|1|1|1|3|0|172; (*GB) gi|255631159|gb|ACU15945.1| (e_value=2e-28) unknown [Glycine max];; (*SWP) sp|Q8GYM1|GSTUM_ARATH (e_value=5e-27) Glutathione S-transferase U22 OS=Arabidopsis thaliana GN=GSTU22 PE=2 SV=1;; (*TAIR) AT1G78340.1 (e_value=4e-28) | Symbols: ATGSTU22, GSTU22 | glutathione S-transferase TAU 22 | chr1:29473046-29473797 REVERSE LENGTH=218;; (*ITAG) Solyc12g011320.1.1 (e_value=1e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4162044-4163230 transcript_region:SL2.40ch12:4162044..4163230- go_terms:GO:0055114 functional_description:"Glutathione S-transferase (AHRD V1 ***- D3Y4H6_9ROSI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0055114 NbS00021718g0005.1 protein AED:0.16 eAED:0.19 QI:26|0.75|0.8|1|0.5|0.4|5|0|244; (*GB) gi|255578135|ref|XP_002529937.1| (e_value=2e-150) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=1e-120) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT2G28315.1 (e_value=7e-144) | Symbols: | Nucleotide/sugar transporter family protein | chr2:12088896-12090570 FORWARD LENGTH=342;; (*ITAG) Solyc11g069540.1.1 (e_value=4e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51242625-51246521 transcript_region:SL2.40ch11:51242625..51246521- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00007755g0005.1 protein AED:0.24 eAED:0.29 QI:0|0|0|0.25|1|1|8|0|861; (*GB) gi|225465743|ref|XP_002264820.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255521 [Vitis vinifera];; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc12g006420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:903491-908840 transcript_region:SL2.40ch12:903491..908840- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00007755g0008.1 protein AED:0.41 eAED:0.41 QI:0|0.87|0.88|1|0.62|0.66|9|308|204; (*GB) gi|225443120|ref|XP_002274979.1| (e_value=3e-94) PREDICTED: OTU domain-containing protein DDB_G0284757 isoform 1 [Vitis vinifera];; (*SWP) sp|Q54P70|Y4757_DICDI (e_value=1e-18) OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2;; (*TAIR) AT3G22260.1 (e_value=2e-89) | Symbols: | Cysteine proteinases superfamily protein | chr3:7871489-7873393 FORWARD LENGTH=240;; (*ITAG) Solyc05g016250.2.1 (e_value=2e-111) genomic_reference:SL2.40ch05 gene_region:15405287-15418394 transcript_region:SL2.40ch05:15405287..15418394- go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6U3W2_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00014320g0008.1 protein AED:0.26 eAED:0.26 QI:257|0.75|0.6|1|0.5|0.8|5|407|131; (*GB) gi|225436960|ref|XP_002276256.1| (e_value=6e-55) PREDICTED: probable glutathione peroxidase 4 [Vitis vinifera];; (*SWP) sp|Q8L910|GPX4_ARATH (e_value=4e-51) Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1;; (*TAIR) AT2G48150.1 (e_value=3e-52) | Symbols: ATGPX4, GPX4 | glutathione peroxidase 4 | chr2:19688109-19689099 REVERSE LENGTH=170;; (*ITAG) Solyc09g064850.2.1 (e_value=3e-61) genomic_reference:SL2.40ch09 gene_region:57914680-57927124 transcript_region:SL2.40ch09:57914680..57927124+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9T4A6_RICCO); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00014320g0007.1 protein AED:0.42 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|72; (*ITAG) Solyc09g064910.1.1 (e_value=7e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57998513-57999457 transcript_region:SL2.40ch09:57998513..57999457- go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- D7WPA4_9BACI); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00014320g0003.1 protein AED:0.39 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|154; (*GB) gi|384081623|ref|NP_001244915.1| (e_value=2e-35) adenylate isopentenyltransferase [Solanum lycopersicum];; (*SWP) sp|Q94ID2|IPT5_ARATH (e_value=1e-21) Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2;; (*TAIR) AT5G19040.1 (e_value=1e-22) | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 | chr5:6362389-6363381 REVERSE LENGTH=330;; (*ITAG) Solyc09g064910.1.1 (e_value=4e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57998513-57999457 transcript_region:SL2.40ch09:57998513..57999457- go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- D7WPA4_9BACI); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00025742g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|459; (*GB) gi|193245812|gb|ACF17125.1| (e_value=0.0) CER6 [Solanum tuberosum];; (*SWP) sp|Q9XF43|KCS6_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1;; (*TAIR) AT1G68530.1 (e_value=0.0) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497;; (*ITAG) Solyc02g085870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43228977-43231217 transcript_region:SL2.40ch02:43228977..43231217+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00036715g0005.1 protein AED:0.68 eAED:0.80 QI:0|0|0|0.66|0|0|3|0|97 NbS00007949g0006.1 protein AED:0.26 eAED:0.26 QI:378|1|1|1|0.5|0.33|3|299|118; (*GB) gi|225451517|ref|XP_002272710.1| (e_value=1e-66) PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Vitis vinifera];; (*SWP) sp|Q9SW27|MUB3_ARATH (e_value=2e-56) Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1;; (*TAIR) AT4G24990.1 (e_value=2e-57) | Symbols: ATGP4 | Ubiquitin family protein | chr4:12849973-12851249 REVERSE LENGTH=118;; (*ITAG) Solyc02g068230.2.1 (e_value=4e-78) genomic_reference:SL2.40ch02 gene_region:32799250-32807472 transcript_region:SL2.40ch02:32799250..32807472- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00000982g0004.1 protein AED:0.18 eAED:0.19 QI:277|0.66|0.71|1|0.66|0.85|7|355|203; (*GB) gi|224066313|ref|XP_002302078.1| (e_value=9e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43680.2 (e_value=2e-36) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. | chr5:17544074-17545354 FORWARD LENGTH=232;; (*ITAG) Solyc04g080950.2.1 (e_value=5e-83) genomic_reference:SL2.40ch04 gene_region:62601559-62605364 transcript_region:SL2.40ch04:62601559..62605364- functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG95_ARATH)"; NbS00010199g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|224099281|ref|XP_002311422.1| (e_value=2e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-11) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G30530.1 (e_value=6e-47) | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper 42 | chr3:12139512-12140033 FORWARD LENGTH=173;; (*ITAG) Solyc04g005170.1.1 (e_value=7e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:118047-118622 transcript_region:SL2.40ch04:118047..118622- go_terms:GO:0046982,GO:0042803 functional_description:"BZip transcription factor (AHRD V1 ***- Q9AT29_PHAVU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbS00010199g0007.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0.5|0.33|3|225|336; (*GB) gi|14009640|gb|AAK51690.1|AF307144_1 (e_value=4e-167) cytosolic 6-phosphogluconate dehydrogenase [Spinacia oleracea];; (*SWP) sp|P80859|6PGD2_BACSU (e_value=2e-77) 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4;; (*TAIR) AT3G02360.1 (e_value=3e-165) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr3:482498-483958 FORWARD LENGTH=486;; (*ITAG) Solyc04g005160.1.1 (e_value=2e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:106694-108109 transcript_region:SL2.40ch04:106694..108109- go_terms:GO:0004616,GO:0042802 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 **** B9N1W3_POPTR); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating "; GO:0004616,GO:0042802 NbS00010199g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|150; (*ITAG) Solyc05g010270.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4431688-4432116 transcript_region:SL2.40ch05:4431688..4432116- functional_description:"Unknown Protein (AHRD V1)"; NbS00010199g0008.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|0|0|2|0|87; (*ITAG) Solyc09g091110.2.1 (e_value=7e-22) genomic_reference:SL2.40ch09 gene_region:65811942-65813198 transcript_region:SL2.40ch09:65811942..65813198- functional_description:"Unknown Protein (AHRD V1)"; NbS00049404g0003.1 protein AED:0.11 eAED:1.00 QI:14|0|0|1|0|0|2|241|61 NbS00006414g0005.1 protein AED:0.41 eAED:0.48 QI:0|0.16|0.14|0.85|0.5|0.42|7|0|254; (*GB) gi|357481187|ref|XP_003610879.1| (e_value=5e-80) hypothetical protein MTR_5g008050 [Medicago truncatula];; (*TAIR) AT5G17170.1 (e_value=1e-75) | Symbols: ENH1 | rubredoxin family protein | chr5:5649335-5650975 FORWARD LENGTH=271;; (*ITAG) Solyc03g096850.2.1 (e_value=1e-107) genomic_reference:SL2.40ch03 gene_region:52677249-52679984 transcript_region:SL2.40ch03:52677249..52679984+ go_terms:GO:0005515,GO:0046872 functional_description:"Genomic DNA chromosome 5 P1 clone MKP11 (AHRD V1 **-- Q9FFJ2_ARATH); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0005515,GO:0046872 NbS00010079g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|0.33|0.25|4|0|249; (*GB) gi|297740326|emb|CBI30508.3| (e_value=2e-82) unnamed protein product [Vitis vinifera];; (*SWP) sp|P50162|TRN1_DATST (e_value=1e-81) Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1;; (*TAIR) AT5G06060.1 (e_value=2e-72) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc09g011130.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4495020-4498534 transcript_region:SL2.40ch09:4495020..4498534+ go_terms:GO:0010301 functional_description:"Dehydrogenase/reductase SDR family member 4 (AHRD V1 **-* DHRS4_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00058717g0008.1 protein AED:0.22 eAED:0.23 QI:38|0.5|0.33|1|0.5|0.33|3|0|169; (*GB) gi|225443095|ref|XP_002274018.1| (e_value=2e-68) PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=1e-15) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT1G15870.1 (e_value=9e-59) | Symbols: | Mitochondrial glycoprotein family protein | chr1:5457153-5458245 FORWARD LENGTH=242;; (*ITAG) Solyc03g117080.2.1 (e_value=2e-100) genomic_reference:SL2.40ch03 gene_region:60392756-60395276 transcript_region:SL2.40ch03:60392756..60395276- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7KDK7_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00058717g0014.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|0.66|1|4|340|238; (*GB) gi|225443092|ref|XP_002273577.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100243908 [Vitis vinifera];; (*TAIR) AT1G80980.1 (e_value=6e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80700.1); Has 477 Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422184-30423440 REVERSE LENGTH=214;; (*ITAG) Solyc03g117090.2.1 (e_value=2e-75) genomic_reference:SL2.40ch03 gene_region:60395706-60401093 transcript_region:SL2.40ch03:60395706..60401093- functional_description:"Unknown Protein (AHRD V1)"; NbS00058717g0015.1 protein AED:0.19 eAED:0.24 QI:0|0|0|0.5|0|0|2|0|283; (*GB) gi|147832714|emb|CAN74885.1| (e_value=6e-61) hypothetical protein VITISV_000223 [Vitis vinifera];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=1e-36) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=9e-38) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc03g117070.1.1 (e_value=4e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60387755-60388444 transcript_region:SL2.40ch03:60387755..60388444+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00058717g0013.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|0|0|2|0|89 NbS00030192g0007.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|1|1|3|0|498; (*GB) gi|5123836|emb|CAB45387.1| (e_value=0.0) NAD-malate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SN86|MDHP_ARATH (e_value=0.0) Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1;; (*TAIR) AT3G47520.1 (e_value=0.0) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403;; (*ITAG) Solyc03g115990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59594180-59595418 transcript_region:SL2.40ch03:59594180..59595418+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** O48906_MEDSA); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00030192g0016.1 protein AED:0.08 eAED:0.08 QI:211|0.90|0.75|0.91|0.63|0.58|12|0|507; (*GB) gi|255558117|ref|XP_002520087.1| (e_value=6e-134) origin recognition complex subunit, putative [Ricinus communis];; (*SWP) sp|Q9UBD5|ORC3_HUMAN (e_value=5e-13) Origin recognition complex subunit 3 OS=Homo sapiens GN=ORC3 PE=1 SV=1;; (*TAIR) AT5G16690.1 (e_value=3e-120) | Symbols: ORC3, ATORC3 | origin recognition complex subunit 3 | chr5:5474410-5479878 FORWARD LENGTH=734;; (*ITAG) Solyc12g013880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4667669-4679426 transcript_region:SL2.40ch12:4667669..4679426- go_terms:GO:0005664 functional_description:"Origin recognition complex subunit 3 (AHRD V1 ***- Q945C6_MAIZE); contains Interpro domain(s) IPR010748 Origin recognition complex subunit 3, N-terminal "; GO:0005664 NbS00030192g0005.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|393; (*GB) gi|225457409|ref|XP_002282049.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Vitis vinifera];; (*SWP) sp|Q9SN85|PP267_ARATH (e_value=9e-161) Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1;; (*TAIR) AT3G47530.1 (e_value=7e-162) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17517382-17519157 REVERSE LENGTH=591;; (*ITAG) Solyc03g116000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59596583-59598448 transcript_region:SL2.40ch03:59596583..59598448- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00030192g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|166; (*GB) gi|225457409|ref|XP_002282049.1| (e_value=5e-47) PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Vitis vinifera];; (*SWP) sp|Q9SN85|PP267_ARATH (e_value=2e-43) Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1;; (*TAIR) AT3G47530.1 (e_value=1e-44) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17517382-17519157 REVERSE LENGTH=591;; (*ITAG) Solyc03g116000.1.1 (e_value=6e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59596583-59598448 transcript_region:SL2.40ch03:59596583..59598448- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00002930g0014.1 protein AED:0.43 eAED:0.63 QI:203|0.5|0.66|1|0|0.33|3|0|66 NbS00002930g0013.1 protein AED:0.14 eAED:0.14 QI:132|0.75|0.8|1|1|1|5|0|518; (*GB) gi|85068678|gb|ABC69419.1| (e_value=0.0) CYP72A56 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g055470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60808989-60811808 transcript_region:SL2.40ch07:60808989..60811808- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002930g0007.1 protein AED:0.19 eAED:0.19 QI:114|0.5|0.57|1|1|1|7|253|493; (*GB) gi|85068668|gb|ABC69414.1| (e_value=0.0) CYP72A57 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g055350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60736172-60738580 transcript_region:SL2.40ch07:60736172..60738580- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002930g0017.1 protein AED:0.36 eAED:0.44 QI:0|0|0|1|0|0.5|2|0|148; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=8e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc10g008580.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2686335-2687492 transcript_region:SL2.40ch10:2686335..2687492+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00002930g0018.1 protein AED:0.38 eAED:0.78 QI:0|0|0|1|1|1|3|0|232; (*GB) gi|85068668|gb|ABC69414.1| (e_value=3e-53) CYP72A57 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=9e-21) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=1e-22) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g062510.2.1 (e_value=2e-43) genomic_reference:SL2.40ch07 gene_region:62439678-62443172 transcript_region:SL2.40ch07:62439678..62443172+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00002930g0008.1 protein AED:0.71 eAED:0.89 QI:0|0|0|0.5|1|1|2|0|127 NbS00002930g0015.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-27) hypothetical protein [Nicotiana tabacum]; NbS00005614g0009.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|75|487; (*GB) gi|224069094|ref|XP_002326273.1| (e_value=9e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=1e-52) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc04g055100.1.1 (e_value=5e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:52819722-52820672 transcript_region:SL2.40ch04:52819722..52820672- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00005614g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0.33|1|1|1|3|0|137; (*GB) gi|225434301|ref|XP_002264308.1| (e_value=3e-77) PREDICTED: KH domain-containing protein At2g38610 [Vitis vinifera];; (*SWP) sp|Q75GR5|SPIN1_ORYSJ (e_value=4e-70) KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1;; (*TAIR) AT3G08620.1 (e_value=8e-71) | Symbols: | RNA-binding KH domain-containing protein | chr3:2617925-2620314 FORWARD LENGTH=283;; (*ITAG) Solyc06g082710.2.1 (e_value=4e-84) genomic_reference:SL2.40ch06 gene_region:44722997-44726998 transcript_region:SL2.40ch06:44722997..44726998- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B4FN92_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00005614g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|224069094|ref|XP_002326273.1| (e_value=5e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=2e-48) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc04g055100.1.1 (e_value=2e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:52819722-52820672 transcript_region:SL2.40ch04:52819722..52820672- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00014032g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|151 NbS00014032g0003.1 protein AED:0.07 eAED:0.07 QI:110|0.85|0.62|1|0.85|0.75|8|531|694; (*GB) gi|225444476|ref|XP_002272817.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Vitis vinifera];; (*SWP) sp|Q8VCY6|UTP6_MOUSE (e_value=2e-36) U3 small nucleolar RNA-associated protein 6 homolog OS=Mus musculus GN=Utp6 PE=2 SV=1;; (*TAIR) AT4G28200.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:13987808-13990422 REVERSE LENGTH=648;; (*ITAG) Solyc02g032920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20169876-20176239 transcript_region:SL2.40ch02:20169876..20176239+ go_terms:GO:0005622 functional_description:"U3 small nucleolar RNA-associated protein 6 homolog (AHRD V1 *-*- B5XAY9_SALSA); contains Interpro domain(s) IPR013949 U3 small nucleolar RNA-associated protein 6 "; GO:0005622 NbS00014032g0011.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|1|2|0|222; (*GB) gi|118487230|gb|ABK95443.1| (e_value=4e-115) unknown [Populus trichocarpa];; (*TAIR) AT5G42570.1 (e_value=3e-96) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc02g032930.2.1 (e_value=2e-142) genomic_reference:SL2.40ch02 gene_region:20179350-20185331 transcript_region:SL2.40ch02:20179350..20185331+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00014032g0111.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|1|1|4|284|485 NbS00014032g0110.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|0.5|0.33|3|2631|1017 NbS00014032g0112.1 protein AED:0.12 eAED:0.12 QI:170|1|1|1|1|1|5|222|465 NbS00014032g0202.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|81 NbS00014032g0204.1 protein AED:0.53 eAED:0.54 QI:0|0|0|0.33|1|1|3|0|201 NbS00007904g0033.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.4|1|1|1|5|0|600; (*GB) gi|255540321|ref|XP_002511225.1| (e_value=0.0) malate synthase, putative [Ricinus communis];; (*SWP) sp|P17815|MASY_RICCO (e_value=0.0) Malate synthase, glyoxysomal OS=Ricinus communis PE=2 SV=1;; (*TAIR) AT5G03860.2 (e_value=0.0) | Symbols: MLS | malate synthase | chr5:1032276-1034527 REVERSE LENGTH=562;; (*ITAG) Solyc03g111140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55852610-55855123 transcript_region:SL2.40ch03:55852610..55855123- go_terms:GO:0004474,GO:0042802 functional_description:"Malate synthase (AHRD V1 **** B9RAK0_RICCO); contains Interpro domain(s) IPR006252 Malate synthase A "; GO:0004474,GO:0042802 NbS00007904g0023.1 protein AED:0.13 eAED:0.13 QI:430|0.8|0.83|1|1|1|6|231|568; (*GB) gi|255540313|ref|XP_002511221.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|Q84P23|4CLL9_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2;; (*TAIR) AT5G63380.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562;; (*ITAG) Solyc03g111170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55870931-55876919 transcript_region:SL2.40ch03:55870931..55876919- go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9I3N1_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00007904g0024.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|0.66|0.5|4|405|369; (*GB) gi|147768421|emb|CAN75660.1| (e_value=2e-147) hypothetical protein VITISV_007922 [Vitis vinifera];; (*TAIR) AT1G67570.1 (e_value=7e-121) | Symbols: | Protein of unknown function (DUF3537) | chr1:25325318-25326938 FORWARD LENGTH=456;; (*ITAG) Solyc03g111150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55855757-55859349 transcript_region:SL2.40ch03:55855757..55859349- functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00007904g0021.1 protein AED:0.18 eAED:0.21 QI:309|0.4|0.5|1|0.6|0.66|6|0|456; (*GB) gi|224136085|ref|XP_002322236.1| (e_value=4e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-22) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G63390.1 (e_value=1e-143) | Symbols: | O-fucosyltransferase family protein | chr5:25390512-25392591 REVERSE LENGTH=559;; (*ITAG) Solyc03g111190.1.1 (e_value=5e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55888514-55890608 transcript_region:SL2.40ch03:55888514..55890608- functional_description:"Auxin-independent growth promoter-like protein (AHRD V1 ***- Q9FMW3_ARATH); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00007904g0031.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|0.5|0.66|3|0|129; (*ITAG) Solyc04g053070.1.1 (e_value=7e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00007904g0029.1 protein AED:0.31 eAED:0.31 QI:93|0.90|0.91|1|0.81|0.75|12|129|441; (*GB) gi|385178691|sp|B9RAJ0.2|DNPEP_RICCO (e_value=0.0) RecName: Full=Probable aspartyl aminopeptidase;; (*SWP) sp|B9RAJ0|DNPEP_RICCO (e_value=0.0) Probable aspartyl aminopeptidase OS=Ricinus communis GN=RCOM_1506700 PE=2 SV=2;; (*TAIR) AT5G60160.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:24223887-24226783 REVERSE LENGTH=477;; (*ITAG) Solyc03g111180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55881016-55887536 transcript_region:SL2.40ch03:55881016..55887536- go_terms:GO:0005773 functional_description:"Aspartyl aminopeptidase-like protein (AHRD V1 ***- Q8LF32_ARATH); contains Interpro domain(s) IPR001948 Peptidase M18, aminopeptidase I "; GO:0005773 NbS00007904g0035.1 protein AED:0.27 eAED:0.32 QI:0|0|0|1|0|0.4|5|0|284; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-93) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g067450.1.1 (e_value=1e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:68529763-68532921 transcript_region:SL2.40ch01:68529763..68532921- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00007904g0036.1 protein AED:0.37 eAED:0.38 QI:1|0|0|1|0|0.33|3|0|155; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-25) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006403g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|302|973; (*GB) gi|225441495|ref|XP_002275839.1| (e_value=0.0) PREDICTED: gamma-tubulin complex component 3 homolog [Vitis vinifera];; (*SWP) sp|Q96CW5|GCP3_HUMAN (e_value=3e-100) Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2;; (*TAIR) AT5G06680.1 (e_value=0.0) | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle pole body component 98 | chr5:2056741-2059369 FORWARD LENGTH=838;; (*ITAG) Solyc09g009140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2480875-2483999 transcript_region:SL2.40ch09:2480875..2483999+ go_terms:GO:0043015 functional_description:"Gamma-tubulin complex component 3 (AHRD V1 **** A8NXM0_COPC7); contains Interpro domain(s) IPR015697 Gamma tubulin complex protein 3 "; GO:0043015 NbS00060616g0010.1 protein AED:0.19 eAED:0.19 QI:181|0.57|0.62|1|0.71|0.62|8|164|452; (*GB) gi|147774898|emb|CAN77211.1| (e_value=2e-147) hypothetical protein VITISV_035026 [Vitis vinifera];; (*SWP) sp|P16273|PRPX_HORVU (e_value=1e-76) Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2;; (*TAIR) AT1G78780.2 (e_value=1e-74) | Symbols: | pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=238;; (*ITAG) Solyc04g064880.2.1 (e_value=5e-144) genomic_reference:SL2.40ch04 gene_region:55158359-55160454 transcript_region:SL2.40ch04:55158359..55160454+ functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbS00060616g0011.1 protein AED:0.17 eAED:0.27 QI:0|0.14|0|0.87|0.42|0.37|8|0|438; (*GB) gi|225457743|ref|XP_002278065.1| (e_value=3e-126) PREDICTED: endoglucanase 10-like [Vitis vinifera];; (*SWP) sp|O04478|GUN7_ARATH (e_value=3e-66) Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1;; (*TAIR) AT1G65610.1 (e_value=2e-67) | Symbols: ATGH9A2, KOR2 | Six-hairpin glycosidases superfamily protein | chr1:24391823-24395261 REVERSE LENGTH=623;; (*ITAG) Solyc01g102580.2.1 (e_value=1e-68) genomic_reference:SL2.40ch01 gene_region:83117822-83121772 transcript_region:SL2.40ch01:83117822..83121772- go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00036426g0003.1 protein AED:0.11 eAED:0.11 QI:327|0.85|0.75|1|0.57|0.5|8|397|662; (*GB) gi|255566563|ref|XP_002524266.1| (e_value=2e-16) hypothetical protein RCOM_1520720 [Ricinus communis];; (*TAIR) AT2G31130.1 (e_value=5e-13) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc07g062640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62556707-62560342 transcript_region:SL2.40ch07:62556707..62560342+ functional_description:"Fiber protein Fb32 (AHRD V1 *-*- Q6UA04_GOSBA)"; NbS00024962g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|4|308|125; (*GB) gi|225458611|ref|XP_002284735.1| (e_value=4e-74) PREDICTED: peroxisomal multifunctional enzyme type 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q23655|NLT1_CAEEL (e_value=2e-15) Non-specific lipid-transfer protein-like OS=Caenorhabditis elegans GN=nlt-1 PE=2 SV=1;; (*TAIR) AT5G42890.1 (e_value=6e-67) | Symbols: ATSCP2, SCP2 | sterol carrier protein 2 | chr5:17194458-17195910 REVERSE LENGTH=123;; (*ITAG) Solyc04g078920.2.1 (e_value=5e-81) genomic_reference:SL2.40ch04 gene_region:61177450-61178933 transcript_region:SL2.40ch04:61177450..61178933+ go_terms:GO:0005515 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B6TQ98_MAIZE); contains Interpro domain(s) IPR016083 Sterol-binding-like "; GO:0005515 NbS00055116g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|68; (*SWP) sp|O81057|ASK14_ARATH (e_value=7e-15) SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1;; (*TAIR) AT2G03170.1 (e_value=5e-16) | Symbols: ASK14, SK14 | SKP1-like 14 | chr2:961322-961771 FORWARD LENGTH=149;; (*ITAG) Solyc11g008240.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2469137-2469613 transcript_region:SL2.40ch11:2469137..2469613+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- C3V9V9_CITMA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00058827g0003.1 protein AED:0.51 eAED:0.51 QI:3|0.5|0|0.66|0.5|0.66|3|0|123; (*GB) gi|255575064|ref|XP_002528437.1| (e_value=7e-53) methionine-tRNA synthetase, putative [Ricinus communis];; (*SWP) sp|Q8Z068|SYM_NOSS1 (e_value=3e-29) Methionine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=metG PE=3 SV=1;; (*TAIR) AT3G55400.1 (e_value=1e-54) | Symbols: OVA1 | methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) | chr3:20535809-20538999 REVERSE LENGTH=616;; (*ITAG) Solyc05g054600.2.1 (e_value=1e-60) genomic_reference:SL2.40ch05 gene_region:63621360-63629242 transcript_region:SL2.40ch05:63621360..63629242- go_terms:GO:0004825 functional_description:"Methionyl-tRNA synthetase (AHRD V1 **** B2J3G3_NOSP7); contains Interpro domain(s) IPR002304 Methionyl-tRNA synthetase, class Ia "; GO:0004825 NbS00007868g0017.1 protein AED:0.15 eAED:0.15 QI:253|0.66|0.85|1|0.83|0.71|7|165|538; (*GB) gi|147866320|emb|CAN82032.1| (e_value=0.0) hypothetical protein VITISV_012090 [Vitis vinifera];; (*SWP) sp|Q55480|YZ37_SYNY3 (e_value=1e-25) Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0537 PE=3 SV=1;; (*TAIR) AT4G27600.1 (e_value=0.0) | Symbols: NARA5 | pfkB-like carbohydrate kinase family protein | chr4:13782753-13785005 REVERSE LENGTH=471;; (*ITAG) Solyc03g097210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52970981-52975260 transcript_region:SL2.40ch03:52970981..52975260+ go_terms:GO:0016301 functional_description:"Kinase pfkB family protein (AHRD V1 **-* Q0FQL0_9RHOB); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00007868g0019.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|290; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-56) RNase H family protein [Solanum demissum];; (*ITAG) Solyc03g093900.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00007868g0006.1 protein AED:0.51 eAED:0.51 QI:0|0|0|1|1|1|2|0|385; (*ITAG) Solyc01g017760.1.1 (e_value=1e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007868g0004.1 protein AED:0.50 eAED:0.55 QI:0|0|0.5|1|1|1|2|565|102 NbS00048376g0002.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.2|1|1|5|0|98 NbS00057643g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0|0.33|3|0|129; (*ITAG) Solyc05g010350.2.1 (e_value=4e-24) genomic_reference:SL2.40ch05 gene_region:4498065-4499128 transcript_region:SL2.40ch05:4498065..4499128- functional_description:"Unknown Protein (AHRD V1)"; NbS00037236g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|3|0|400; (*GB) gi|77416925|gb|ABA81858.1| (e_value=0.0) brittle 1 protein-like [Solanum tuberosum];; (*SWP) sp|P29518|BT1_MAIZE (e_value=4e-123) Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1;; (*TAIR) AT4G32400.1 (e_value=4e-173) | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondrial substrate carrier family protein | chr4:15638686-15640238 FORWARD LENGTH=392;; (*ITAG) Solyc08g061090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43863377-43867169 transcript_region:SL2.40ch08:43863377..43867169+ go_terms:GO:0005310 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MYP8_MICPS); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0005310 NbS00037236g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.92|0.73|1|0.92|0.86|15|0|1093; (*GB) gi|359476121|ref|XP_002282575.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 1 [UDP-forming]-like [Vitis vinifera];; (*SWP) sp|O48946|CESA1_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1;; (*TAIR) AT4G32410.1 (e_value=0.0) | Symbols: CESA1, RSW1, AtCESA1 | cellulose synthase 1 | chr4:15641009-15646388 REVERSE LENGTH=1081;; (*ITAG) Solyc08g061100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43867693-43876166 transcript_region:SL2.40ch08:43867693..43876166- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IKV7_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00049024g0002.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|169908354|gb|ACB05475.1| (e_value=2e-27) LIM domain protein 2b [Nicotiana tabacum]; NbS00016048g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.9|0.72|1|0.5|0.45|11|0|377; (*GB) gi|359477835|ref|XP_002282954.2| (e_value=0.0) PREDICTED: serine incorporator 3-like [Vitis vinifera];; (*SWP) sp|Q13530|SERC3_HUMAN (e_value=2e-24) Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2;; (*TAIR) AT2G33205.1 (e_value=2e-177) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr2:14070987-14073211 REVERSE LENGTH=422;; (*ITAG) Solyc09g091200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65866538-65869942 transcript_region:SL2.40ch09:65866538..65869942+ go_terms:GO:0016020 functional_description:"Serine incorporator 1 (AHRD V1 **-- B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0016020 NbS00016048g0007.1 protein AED:0.28 eAED:0.30 QI:35|0.71|0.87|1|0.57|0.5|8|240|202; (*GB) gi|255554260|ref|XP_002518170.1| (e_value=6e-65) Inhibitor of growth protein, putative [Ricinus communis];; (*SWP) sp|Q9LIQ6|ING1_ARATH (e_value=8e-53) PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1;; (*TAIR) AT3G24010.1 (e_value=6e-54) | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger superfamily protein | chr3:8676120-8678186 REVERSE LENGTH=234;; (*ITAG) Solyc09g091190.2.1 (e_value=5e-79) genomic_reference:SL2.40ch09 gene_region:65856500-65861321 transcript_region:SL2.40ch09:65856500..65861321- go_terms:GO:0003713 functional_description:"Inhibitor of growth protein 5 (AHRD V1 *-*- B6T7N2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003713 NbS00016048g0114.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|235 NbS00016048g0112.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|1|4|199|319 NbS00016048g0104.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|277 NbS00016048g0113.1 protein AED:0.26 eAED:0.26 QI:223|1|1|1|0.77|0.7|10|24|358 NbS00035775g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|4|0|344; (*GB) gi|224122524|ref|XP_002318858.1| (e_value=9e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLI3|P2C75_ARATH (e_value=5e-86) Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1;; (*TAIR) AT5G51760.1 (e_value=4e-87) | Symbols: AHG1 | Protein phosphatase 2C family protein | chr5:21026916-21028912 FORWARD LENGTH=416;; (*ITAG) Solyc03g006960.2.1 (e_value=4e-117) genomic_reference:SL2.40ch03 gene_region:1520013-1522985 transcript_region:SL2.40ch03:1520013..1522985- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00035775g0010.1 protein AED:0.05 eAED:0.10 QI:0|1|0.5|1|1|1|4|0|421; (*GB) gi|255539637|ref|XP_002510883.1| (e_value=2e-118) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9FLI3|P2C75_ARATH (e_value=2e-108) Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1;; (*TAIR) AT5G51760.1 (e_value=1e-109) | Symbols: AHG1 | Protein phosphatase 2C family protein | chr5:21026916-21028912 FORWARD LENGTH=416;; (*ITAG) Solyc03g006960.2.1 (e_value=8e-143) genomic_reference:SL2.40ch03 gene_region:1520013-1522985 transcript_region:SL2.40ch03:1520013..1522985- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00035775g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.2|0.16|0.83|1|1|6|59|751; (*GB) gi|356529553|ref|XP_003533355.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Glycine max];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=5e-139) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=4e-140) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc03g006990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1547206-1548822 transcript_region:SL2.40ch03:1547206..1548822- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00054921g0003.1 protein AED:0.21 eAED:0.21 QI:211|0.87|0.82|1|0.62|0.70|17|667|487; (*GB) gi|255552820|ref|XP_002517453.1| (e_value=0.0) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q795R8|YTFP_BACSU (e_value=3e-36) Uncharacterized protein ytfP OS=Bacillus subtilis (strain 168) GN=ytfP PE=4 SV=2;; (*TAIR) AT5G39940.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:15987649-15990561 FORWARD LENGTH=480;; (*ITAG) Solyc02g067480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32248985-32257530 transcript_region:SL2.40ch02:32248985..32257530- go_terms:GO:0050662,GO:0016491 functional_description:"Pyridine nucleotide-disulfide oxidoreductase (AHRD V1 **-* D3I8P7_9BACT); contains Interpro domain(s) IPR004792 HI0933-like protein "; GO:0050662,GO:0016491 NbS00041181g0003.1 protein AED:0.00 eAED:0.00 QI:37|1|1|1|1|1|2|1415|180; (*GB) gi|113374278|gb|ABI34703.1| (e_value=3e-94) DnaJ-like protein isoform [Solanum phureja];; (*SWP) sp|Q9SDN0|DNJ20_ARATH (e_value=1e-57) Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2;; (*TAIR) AT4G13830.2 (e_value=9e-59) | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577 FORWARD LENGTH=197;; (*ITAG) Solyc09g092260.2.1 (e_value=6e-92) genomic_reference:SL2.40ch09 gene_region:66746507-66748076 transcript_region:SL2.40ch09:66746507..66748076+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 20 (AHRD V1 ***- B6U349_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00017101g0016.1 protein AED:0.35 eAED:0.35 QI:440|0.8|0.66|1|0.8|0.83|6|0|359; (*GB) gi|329025170|gb|AEB71568.1| (e_value=5e-165) SNAP33 [Solanum chacoense];; (*SWP) sp|Q9S7P9|SNP33_ARATH (e_value=1e-119) SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1;; (*TAIR) AT5G61210.1 (e_value=8e-121) | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | chr5:24624027-24625366 FORWARD LENGTH=300;; (*ITAG) Solyc03g115470.2.1 (e_value=4e-159) genomic_reference:SL2.40ch03 gene_region:59218266-59222031 transcript_region:SL2.40ch03:59218266..59222031+ go_terms:GO:0005484 functional_description:"Synaptosomal-associated protein 33 (AHRD V1 ***- D7MUI6_ARALY); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00017101g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|255547275|ref|XP_002514695.1| (e_value=4e-41) Protein C6orf149, putative [Ricinus communis];; (*SWP) sp|B8JLQ0|LYRM4_DANRE (e_value=7e-17) LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1;; (*TAIR) AT5G61220.1 (e_value=3e-33) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr5:24626057-24626320 REVERSE LENGTH=87;; (*ITAG) Solyc03g115490.1.1 (e_value=1e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59224065-59224331 transcript_region:SL2.40ch03:59224065..59224331- go_terms:GO:0005515,GO:0003824 functional_description:"LYR motif-containing protein 4 (AHRD V1 ***- C1BY44_ESOLU); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0005515,GO:0003824 NbS00056729g0003.1 protein AED:0.02 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|71 NbS00056729g0001.1 protein AED:0.27 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00056729g0002.1 protein AED:0.64 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|85 NbS00007051g0004.1 protein AED:0.18 eAED:0.18 QI:383|0.93|0.93|1|1|1|16|0|686; (*GB) gi|71726956|gb|AAZ39649.1| (e_value=0.0) cytochrome P450 NADPH-reductase [Petunia x hybrida];; (*SWP) sp|Q05001|NCPR_CATRO (e_value=0.0) NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1;; (*TAIR) AT4G30210.2 (e_value=0.0) | Symbols: ATR2, AR2 | P450 reductase 2 | chr4:14796900-14800578 FORWARD LENGTH=711;; (*ITAG) Solyc07g019460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11523530-11529218 transcript_region:SL2.40ch07:11523530..11529218- go_terms:GO:0003958 functional_description:"Cytochrome P450 NADPH-reductase (AHRD V1 **** B3RFK3_PETHY); contains Interpro domain(s) IPR015702 NADPH Cytochrome P450 Reductase "; GO:0003958 NbS00007051g0112.1 protein AED:0.00 eAED:0.00 QI:30|1|1|1|1|1|2|97|116 NbS00007051g0104.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|1|2|384|637 NbS00007051g0110.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|1|1|5|0|265 NbS00007051g0117.1 protein AED:0.02 eAED:0.02 QI:218|1|1|1|1|1|4|0|174 NbS00033468g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.66|0.5|4|620|472; (*GB) gi|255576302|ref|XP_002529044.1| (e_value=0.0) Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=2e-47) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G07810.1 (e_value=4e-138) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc10g006050.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:793641-797405 transcript_region:SL2.40ch10:793641..797405+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00031364g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|70; (*GB) gi|357442131|ref|XP_003591343.1| (e_value=5e-32) Photosystem Q(B) protein [Medicago truncatula];; (*SWP) sp|Q33282|PSBA_VIGUN (e_value=6e-31) Photosystem Q(B) protein OS=Vigna unguiculata GN=psbA PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=2e-31) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00004060g0004.1 protein AED:0.07 eAED:0.07 QI:290|0.87|0.77|1|0.75|0.77|9|0|358; (*GB) gi|255544908|ref|XP_002513515.1| (e_value=1e-120) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G12470.1 (e_value=3e-120) | Symbols: | Protein of unknown function (DUF3411) | chr5:4044950-4047290 REVERSE LENGTH=386;; (*ITAG) Solyc11g065490.1.1 (e_value=7e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48011022-48019767 transcript_region:SL2.40ch11:48011022..48019767- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q015C3_OSTTA)"; NbS00021039g0023.1 protein AED:0.09 eAED:0.09 QI:317|1|1|1|0.83|0.92|13|229|366; (*GB) gi|296081872|emb|CBI20877.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G25770.1 (e_value=2e-169) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:8969308-8971389 REVERSE LENGTH=360;; (*ITAG) Solyc05g041530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:51247533-51252637 transcript_region:SL2.40ch05:51247533..51252637+ functional_description:"Dienelactone hydrolase domain protein (AHRD V1 *--- C3HWX7_BACTU)"; NbS00021039g0013.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|1118; (*GB) gi|147843035|emb|CAN83309.1| (e_value=5e-148) hypothetical protein VITISV_023021 [Vitis vinifera];; (*SWP) sp|Q8W468|ARI8_ARATH (e_value=9e-146) Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1;; (*TAIR) AT1G65430.1 (e_value=7e-147) | Symbols: ARI8, ATARI8 | IBR domain-containing protein | chr1:24301165-24306159 REVERSE LENGTH=567;; (*ITAG) Solyc06g073340.2.1 (e_value=9e-152) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00021039g0022.1 protein AED:0.24 eAED:0.26 QI:0|0.84|0.85|0.95|0.89|0.85|20|0|1088; (*GB) gi|225435754|ref|XP_002285720.1| (e_value=0.0) PREDICTED: importin-5 [Vitis vinifera];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=0.0) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00021039g0024.1 protein AED:0.05 eAED:0.08 QI:0|0|0|1|0|0|8|0|1098; (*GB) gi|389607304|dbj|BAM17523.1| (e_value=0.0) N' tobamovirus resistance protein, partial [Nicotiana tabacum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=8e-98) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=6e-99) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g069990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51661763-51664081 transcript_region:SL2.40ch11:51661763..51664081- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00001453g0004.1 protein AED:0.27 eAED:0.27 QI:54|1|0.66|1|0.5|0.33|3|487|303; (*GB) gi|225428394|ref|XP_002283631.1| (e_value=5e-98) PREDICTED: uncharacterized protein LOC100250419 [Vitis vinifera];; (*TAIR) AT4G39140.5 (e_value=4e-53) | Symbols: | RING/U-box superfamily protein | chr4:18229637-18231282 REVERSE LENGTH=429;; (*ITAG) Solyc01g109910.2.1 (e_value=5e-139) genomic_reference:SL2.40ch01 gene_region:88514255-88518882 transcript_region:SL2.40ch01:88514255..88518882+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00001453g0016.1 protein AED:0.28 eAED:0.30 QI:259|0.72|0.83|1|0.90|0.75|12|221|385; (*GB) gi|255543767|ref|XP_002512946.1| (e_value=2e-139) Chaperone protein dnaJ, putative [Ricinus communis];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=2e-91) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT4G39150.2 (e_value=2e-135) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr4:18233651-18235740 REVERSE LENGTH=345;; (*ITAG) Solyc01g109890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88496281-88501685 transcript_region:SL2.40ch01:88496281..88501685+ go_terms:GO:0030544,GO:0051087 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 **** B6T7D7_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544,GO:0051087 NbS00001453g0010.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|91; (*GB) gi|357514921|ref|XP_003627749.1| (e_value=5e-22) hypothetical protein MTR_8g037800 [Medicago truncatula];; (*TAIR) AT2G16385.1 (e_value=5e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7094882-7095557 FORWARD LENGTH=83;; (*ITAG) Solyc01g109900.2.1 (e_value=3e-32) genomic_reference:SL2.40ch01 gene_region:88504593-88506151 transcript_region:SL2.40ch01:88504593..88506151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001453g0003.1 protein AED:0.39 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|148 NbS00001453g0005.1 protein AED:0.43 eAED:0.43 QI:298|1|0.5|1|0|0|2|0|119; (*GB) gi|15234961|ref|NP_195625.1| (e_value=6e-34) RING/U-box domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT4G39140.5 (e_value=1e-36) | Symbols: | RING/U-box superfamily protein | chr4:18229637-18231282 REVERSE LENGTH=429;; (*ITAG) Solyc01g109910.2.1 (e_value=2e-63) genomic_reference:SL2.40ch01 gene_region:88514255-88518882 transcript_region:SL2.40ch01:88514255..88518882+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00043765g0004.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|395; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=5e-56) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*TAIR) AT5G09530.1 (e_value=1e-21) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g044710.1.1 (e_value=4e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00025253g0001.1 protein AED:0.23 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|359481652|ref|XP_003632656.1| (e_value=1e-42) PREDICTED: uncharacterized protein LOC100854478 [Vitis vinifera];; (*ITAG) Solyc01g007190.2.1 (e_value=1e-102) genomic_reference:SL2.40ch01 gene_region:1770445-1771528 transcript_region:SL2.40ch01:1770445..1771528+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059682g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|227; (*GB) gi|356507196|ref|XP_003522356.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100817859 [Glycine max];; (*TAIR) AT1G74830.1 (e_value=9e-53) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc03g113600.2.1 (e_value=3e-117) genomic_reference:SL2.40ch03 gene_region:57730078-57733020 transcript_region:SL2.40ch03:57730078..57733020+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00050092g0017.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|1|1|1|3|0|318; (*GB) gi|225433017|ref|XP_002284642.1| (e_value=7e-148) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=2e-134) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=2e-135) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3447416-3449839 transcript_region:SL2.40ch09:3447416..3449839- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00050092g0016.1 protein AED:0.09 eAED:0.09 QI:199|0.91|0.88|1|0.79|0.8|25|0|1049; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=0.0) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc09g010060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00050092g0018.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.6|1|0.75|0.6|5|0|489; (*GB) gi|359430985|gb|AEV46303.1| (e_value=0.0) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|Q8W413|INV4_ARATH (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme CWINV4 OS=Arabidopsis thaliana GN=CWINV4 PE=2 SV=1;; (*TAIR) AT2G36190.1 (e_value=0.0) | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 | chr2:15174951-15177785 REVERSE LENGTH=591;; (*ITAG) Solyc09g010080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3475480-3479343 transcript_region:SL2.40ch09:3475480..3479343+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase, insoluble isoenzyme 1 (AHRD V1 ***- INV1_DAUCA); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00050092g0005.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|581; (*GB) gi|225440839|ref|XP_002276333.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera];; (*SWP) sp|O81767|PP348_ARATH (e_value=2e-170) Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2;; (*TAIR) AT4G33990.1 (e_value=2e-171) | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:16290141-16292612 REVERSE LENGTH=823;; (*ITAG) Solyc09g010070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3468712-3470580 transcript_region:SL2.40ch09:3468712..3470580+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M889_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00050092g0002.1 protein AED:0.31 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|76160931|gb|ABA40429.1| (e_value=1e-41) unknown [Solanum tuberosum];; (*TAIR) AT3G06040.3 (e_value=7e-15) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr3:1824516-1825076 REVERSE LENGTH=186;; (*ITAG) Solyc09g010030.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3451744-3452328 transcript_region:SL2.40ch09:3451744..3452328+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 *-*- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00050092g0001.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|76160931|gb|ABA40429.1| (e_value=4e-25) unknown [Solanum tuberosum];; (*TAIR) AT3G06040.3 (e_value=7e-26) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr3:1824516-1825076 REVERSE LENGTH=186;; (*ITAG) Solyc09g010030.1.1 (e_value=3e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3451744-3452328 transcript_region:SL2.40ch09:3451744..3452328+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 *-*- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00050092g0020.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|3|0|152; (*ITAG) Solyc09g009920.1.1 (e_value=6e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3397388-3398827 transcript_region:SL2.40ch09:3397388..3398827- functional_description:"F-box family protein (AHRD V1 ***- D7MLR5_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00005365g0005.1 protein AED:0.02 eAED:0.02 QI:308|1|1|1|1|1|4|330|410; (*GB) gi|225449392|ref|XP_002282536.1| (e_value=0.0) PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|O22286|BPM3_ARATH (e_value=0.0) BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1;; (*TAIR) AT2G39760.1 (e_value=0.0) | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains containing protein | chr2:16583213-16585983 FORWARD LENGTH=408;; (*ITAG) Solyc05g052960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62276946-62282506 transcript_region:SL2.40ch05:62276946..62282506- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00028487g0009.1 protein AED:0.19 eAED:0.19 QI:378|1|1|1|0.78|0.85|20|273|599; (*GB) gi|225462064|ref|XP_002276057.1| (e_value=0.0) PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Vitis vinifera];; (*SWP) sp|Q3ECP0|TFB1A_ARATH (e_value=0.0) Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis thaliana GN=TFB1-1 PE=2 SV=1;; (*TAIR) AT1G55750.1 (e_value=0.0) | Symbols: | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) | chr1:20840449-20845135 REVERSE LENGTH=591;; (*ITAG) Solyc10g005900.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:693359-702377 transcript_region:SL2.40ch10:693359..702377+ functional_description:"General transcription factor IIH subunit 1 (AHRD V1 ***- TF2H1_DICDI); contains Interpro domain(s) IPR013089 Kelch related "; NbS00028487g0001.1 protein AED:0.32 eAED:0.32 QI:90|0.78|0.8|0.93|1|1|15|0|500; (*GB) gi|225463508|ref|XP_002263911.1| (e_value=0.0) PREDICTED: uridine kinase-like protein 4 [Vitis vinifera];; (*SWP) sp|Q8VYB2|UKL3_ARATH (e_value=0.0) Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1;; (*TAIR) AT1G55810.3 (e_value=0.0) | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861273-20864003 FORWARD LENGTH=466;; (*ITAG) Solyc07g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00028487g0002.1 protein AED:0.25 eAED:0.25 QI:233|0.92|0.93|1|1|1|15|198|387; (*GB) gi|365222920|gb|AEW69812.1| (e_value=0.0) Hop-interacting protein THI111 [Solanum lycopersicum];; (*SWP) sp|A1CDT9|DDI1_ASPCL (e_value=1e-64) DNA damage-inducible protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ddi1 PE=3 SV=1;; (*TAIR) AT3G13235.3 (e_value=0.0) | Symbols: | ubiquitin family protein | chr3:4271492-4274348 REVERSE LENGTH=413;; (*ITAG) Solyc10g005890.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:683370-690823 transcript_region:SL2.40ch10:683370..690823- go_terms:GO:0031593,GO:0000149 functional_description:"DNA-damage inducible protein DDI1-like (AHRD V1 ***- Q8LF25_ARATH); contains Interpro domain(s) IPR019103 Peptidase aspartic, eukaryotic predicted "; GO:0031593,GO:0000149 NbS00040379g0007.1 protein AED:0.31 eAED:0.32 QI:0|0.93|0.87|1|1|1|16|66|534; (*GB) gi|356505306|ref|XP_003521432.1| (e_value=0.0) PREDICTED: pyruvate kinase, cytosolic isozyme-like [Glycine max];; (*SWP) sp|Q42806|KPYC_SOYBN (e_value=1e-128) Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G52990.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr3:19649046-19652237 FORWARD LENGTH=527;; (*ITAG) Solyc10g083720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62811178-62816713 transcript_region:SL2.40ch10:62811178..62816713+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- Q94KE3_ARATH); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00007624g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.5|1|0.33|0.5|4|0|416; (*GB) gi|146747227|gb|ABQ44212.1| (e_value=9e-176) galactinol synthase [Capsicum annuum];; (*TAIR) AT2G47180.1 (e_value=2e-162) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc02g084980.2.1 (e_value=3e-178) genomic_reference:SL2.40ch02 gene_region:42590167-42591767 transcript_region:SL2.40ch02:42590167..42591767- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- C7G304_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00007624g0010.1 protein AED:0.08 eAED:0.08 QI:261|1|1|1|1|1|4|113|267; (*GB) gi|225430694|ref|XP_002263902.1| (e_value=4e-89) PREDICTED: dolichyldiphosphatase 1 [Vitis vinifera];; (*TAIR) AT5G66450.1 (e_value=2e-66) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr5:26534801-26535951 FORWARD LENGTH=286;; (*ITAG) Solyc02g062580.2.1 (e_value=4e-124) genomic_reference:SL2.40ch02 gene_region:28879805-28883422 transcript_region:SL2.40ch02:28879805..28883422+ go_terms:GO:0016020 functional_description:"Dolichyldiphosphatase 1 (AHRD V1 *--- C1C1U9_9MAXI); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020 NbS00022797g0009.1 protein AED:0.00 eAED:0.00 QI:0|0|0.5|1|1|0.5|2|0|567; (*GB) gi|225457363|ref|XP_002284788.1| (e_value=0.0) PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9M5Q1|FUT1_PEA (e_value=0.0) Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1;; (*TAIR) AT2G03220.1 (e_value=0.0) | Symbols: FT1, ATFUT1, ATFT1, MUR2 | fucosyltransferase 1 | chr2:970401-972353 REVERSE LENGTH=558;; (*ITAG) Solyc03g115830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59474331-59476338 transcript_region:SL2.40ch03:59474331..59476338+ go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00022797g0008.1 protein AED:0.22 eAED:0.22 QI:177|0.89|0.9|1|0.68|0.7|20|365|666; (*GB) gi|359491697|ref|XP_002281830.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244920 [Vitis vinifera];; (*TAIR) AT1G18700.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:6437591-6443046 FORWARD LENGTH=700;; (*ITAG) Solyc03g115840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59476727-59495450 transcript_region:SL2.40ch03:59476727..59495450- go_terms:GO:0031072 functional_description:"DnaJ homolog subfamily C member 10 (AHRD V1 *-*- DJC10_RAT); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00060114g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|220; (*GB) gi|255550723|ref|XP_002516410.1| (e_value=2e-107) pepsin A, putative [Ricinus communis];; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=7e-19) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT5G45120.1 (e_value=4e-100) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:18241003-18242478 FORWARD LENGTH=491;; (*ITAG) Solyc02g069360.1.1 (e_value=2e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33856468-33857925 transcript_region:SL2.40ch02:33856468..33857925+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00062062g0003.1 protein AED:0.16 eAED:0.16 QI:190|1|1|1|0|0|2|1096|229 NbS00033916g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|147; (*GB) gi|356505068|ref|XP_003521314.1| (e_value=7e-58) PREDICTED: F-box protein PP2-A13-like [Glycine max];; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=8e-55) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=6e-56) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc01g091700.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:77059070-77061042 transcript_region:SL2.40ch01:77059070..77061042+ go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00003611g0005.1 protein AED:0.07 eAED:0.11 QI:0|0.71|0.37|1|0.28|0.25|8|0|413; (*GB) gi|147864062|emb|CAN83224.1| (e_value=7e-62) hypothetical protein VITISV_031368 [Vitis vinifera];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-26) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G06800.1 (e_value=1e-49) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g080460.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61051696-61053673 transcript_region:SL2.40ch10:61051696..61053673- go_terms:GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q5IWM2_WHEAT); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00003611g0001.1 protein AED:0.29 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|225441405|ref|XP_002278550.1| (e_value=9e-32) PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera];; (*TAIR) AT3G57930.2 (e_value=2e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g080450.1.1 (e_value=3e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61048317-61048733 transcript_region:SL2.40ch10:61048317..61048733- functional_description:"Unknown Protein (AHRD V1)"; NbS00003611g0102.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|327 NbS00003611g0207.1 protein AED:0.30 eAED:0.36 QI:0|0|0|0.75|0.33|0.75|4|0|299 NbS00003611g0307.1 protein AED:0.18 eAED:0.18 QI:184|0.8|0.66|1|0.8|0.66|6|12|382 NbS00003611g0320.1 protein AED:0.24 eAED:0.24 QI:998|0.33|0.75|1|1|1|4|217|243 NbS00003611g0313.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|672 NbS00003611g0318.1 protein AED:0.28 eAED:0.28 QI:179|0.66|0.57|1|1|1|7|711|317 NbS00020318g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|195; (*GB) gi|255550113|ref|XP_002516107.1| (e_value=3e-46) heat-shock protein, putative [Ricinus communis];; (*SWP) sp|P19242|HSP21_PEA (e_value=4e-42) 17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=3e-39) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=2e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00044024g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|7|357|341; (*GB) gi|21912927|emb|CAC84143.2| (e_value=1e-144) thioredoxin peroxidase [Nicotiana tabacum];; (*SWP) sp|Q6ER94|BAS1_ORYSJ (e_value=7e-133) 2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1;; (*TAIR) AT5G06290.1 (e_value=8e-134) | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin B | chr5:1919380-1921211 FORWARD LENGTH=273;; (*ITAG) Solyc10g082030.1.1 (e_value=1e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62258959-62262932 transcript_region:SL2.40ch10:62258959..62262932- go_terms:GO:0016491,GO:0045454,GO:0051920 functional_description:"Peroxiredoxin (AHRD V1 **-- Q9FE12_PHAVU); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454,GO:0051920 NbS00039990g0004.1 protein AED:0.04 eAED:0.04 QI:61|1|1|1|1|1|2|267|159; (*GB) gi|224131574|ref|XP_002321121.1| (e_value=4e-28) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g052460.2.1 (e_value=2e-42) genomic_reference:SL2.40ch07 gene_region:58273857-58275345 transcript_region:SL2.40ch07:58273857..58275345+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 ***- Q9LSZ3_ARATH)"; NbS00045585g0003.1 protein AED:0.00 eAED:0.00 QI:150|1|1|1|1|1|2|238|100; (*GB) gi|356567739|ref|XP_003552074.1| (e_value=5e-51) PREDICTED: uncharacterized protein At4g29660-like [Glycine max];; (*SWP) sp|Q94K18|Y4966_ARATH (e_value=3e-44) Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1;; (*TAIR) AT4G29660.1 (e_value=3e-45) | Symbols: EMB2752 | embryo defective 2752 | chr4:14534495-14535171 REVERSE LENGTH=103;; (*ITAG) Solyc12g008810.1.1 (e_value=5e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2150650-2152871 transcript_region:SL2.40ch12:2150650..2152871- functional_description:"Unknown Protein (AHRD V1)"; NbS00060122g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|3|0|353; (*GB) gi|225427238|ref|XP_002278429.1| (e_value=5e-77) PREDICTED: protein phosphatase 2C 29-like [Vitis vinifera];; (*SWP) sp|O82302|P2C29_ARATH (e_value=1e-34) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=9e-36) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g077150.2.1 (e_value=7e-107) genomic_reference:SL2.40ch08 gene_region:58214125-58220440 transcript_region:SL2.40ch08:58214125..58220440- go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00001032g0009.1 protein AED:0.37 eAED:0.37 QI:0|0.8|0.83|1|1|1|6|113|184; (*GB) gi|147840953|emb|CAN71020.1| (e_value=2e-80) hypothetical protein VITISV_011642 [Vitis vinifera];; (*TAIR) AT2G38570.1 (e_value=2e-70) | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr2:16136854-16138417 REVERSE LENGTH=328;; (*ITAG) Solyc10g085690.1.1 (e_value=8e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64112556-64116118 transcript_region:SL2.40ch10:64112556..64116118+ functional_description:"PRC-barrel domain protein (AHRD V1 *-*- B0CFL1_ACAM1); contains Interpro domain(s) IPR011033 PRC-barrel-like "; NbS00001032g0010.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|0.75|0.6|5|143|491; (*GB) gi|225439719|ref|XP_002273138.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LZV4|STN8_ARATH (e_value=0.0) Serine/threonine-protein kinase STN8, chloroplastic OS=Arabidopsis thaliana GN=STN8 PE=2 SV=1;; (*TAIR) AT5G01920.1 (e_value=0.0) | Symbols: STN8 | Protein kinase superfamily protein | chr5:359154-360867 FORWARD LENGTH=495;; (*ITAG) Solyc10g085680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64107901-64111188 transcript_region:SL2.40ch10:64107901..64111188- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001032g0012.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|127; (*ITAG) Solyc10g085690.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64112556-64116118 transcript_region:SL2.40ch10:64112556..64116118+ functional_description:"PRC-barrel domain protein (AHRD V1 *-*- B0CFL1_ACAM1); contains Interpro domain(s) IPR011033 PRC-barrel-like "; NbS00042161g0003.1 protein AED:0.07 eAED:0.07 QI:163|1|1|1|0.92|0.86|15|112|953; (*GB) gi|19570249|dbj|BAB86284.1| (e_value=0.0) kinesin-like protein NACK2 [Nicotiana tabacum];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=2e-79) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT3G43210.1 (e_value=0.0) | Symbols: TES, ATNACK2, NACK2 | ATP binding microtubule motor family protein | chr3:15191429-15196021 FORWARD LENGTH=938;; (*ITAG) Solyc07g042560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53340157-53347328 transcript_region:SL2.40ch07:53340157..53347328+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8LNZ2_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00016225g0011.1 protein AED:0.25 eAED:0.27 QI:280|0.4|0.31|0.93|0.53|0.5|16|0|1087; (*GB) gi|147827541|emb|CAN62071.1| (e_value=1e-143) hypothetical protein VITISV_036193 [Vitis vinifera];; (*SWP) sp|O04251|Y4211_ARATH (e_value=2e-81) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT4G02110.1 (e_value=1e-82) | Symbols: | transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329;; (*ITAG) Solyc06g009680.2.1 (e_value=2e-117) genomic_reference:SL2.40ch06 gene_region:3623643-3632157 transcript_region:SL2.40ch06:3623643..3632157- go_terms:GO:0008270,GO:0005622 functional_description:"BRCT domain-containing protein (AHRD V1 *--- C5FMN4_NANOT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00021469g0003.1 protein AED:0.10 eAED:0.10 QI:235|1|1|1|1|1|5|243|291; (*GB) gi|224058445|ref|XP_002299513.1| (e_value=7e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28140.1 (e_value=7e-116) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9833029-9834390 REVERSE LENGTH=280;; (*ITAG) Solyc05g012700.2.1 (e_value=1e-169) genomic_reference:SL2.40ch05 gene_region:5890494-5893749 transcript_region:SL2.40ch05:5890494..5893749- functional_description:"Conserved hypothetical membrane protein (AHRD V1 ***- B1XKY4_SYNP2); contains Interpro domain(s) IPR019275 Protein of unknown function DUF2301, transmembrane "; NbS00003523g0011.1 protein AED:0.00 eAED:0.00 QI:601|1|1|1|1|1|2|401|154; (*GB) gi|255553851|ref|XP_002517966.1| (e_value=5e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G11120.2 (e_value=2e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3715229-3717320 FORWARD LENGTH=161;; (*ITAG) Solyc10g008540.2.1 (e_value=7e-51) genomic_reference:SL2.40ch10 gene_region:2655519-2659448 transcript_region:SL2.40ch10:2655519..2659448+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003523g0012.1 protein AED:0.35 eAED:0.52 QI:0|0.22|0.3|0.5|0.77|0.9|10|0|241; (*GB) gi|356517548|ref|XP_003527449.1| (e_value=2e-83) PREDICTED: secretory carrier-associated membrane protein 1-like isoform 2 [Glycine max];; (*SWP) sp|Q9M5P2|SCAM3_ARATH (e_value=3e-80) Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1;; (*TAIR) AT1G61250.1 (e_value=2e-81) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc10g008550.2.1 (e_value=7e-101) genomic_reference:SL2.40ch10 gene_region:2660906-2664027 transcript_region:SL2.40ch10:2660906..2664027+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00003523g0013.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|1|0.33|0.5|4|403|358; (*GB) gi|118489021|gb|ABK96318.1| (e_value=0.0) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|B9H5L9|LIAS_POPTR (e_value=0.0) Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1;; (*TAIR) AT2G20860.1 (e_value=4e-178) | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979636-8980983 FORWARD LENGTH=374;; (*ITAG) Solyc07g054540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60156209-60161037 transcript_region:SL2.40ch07:60156209..60161037+ go_terms:GO:0017140 functional_description:"Lipoyl synthase (AHRD V1 **** B8J937_ANAD2); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0017140 NbS00039096g0002.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|147770299|emb|CAN62477.1| (e_value=6e-143) hypothetical protein VITISV_005325 [Vitis vinifera];; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=7e-35) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1;; (*TAIR) AT1G03050.1 (e_value=5e-36) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599;; (*ITAG) Solyc01g005170.1.1 (e_value=2e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:141656-144896 transcript_region:SL2.40ch01:141656..144896+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TW95_MAIZE); contains Interpro domain(s) IPR011417 ANTH "; GO:0030118,GO:0005543 NbS00039096g0010.1 protein AED:0.41 eAED:0.50 QI:0|0.33|0|1|0.33|0.25|4|0|67 NbS00039096g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|133; (*GB) gi|57013961|ref|YP_173433.1| (e_value=1e-37) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*SWP) sp|B1NTP4|PSBC_TRACE (e_value=2e-18) Photosystem II CP43 chlorophyll apoprotein OS=Trachelium caeruleum GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=1e-19) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc00g142160.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:17156362-17156679 transcript_region:SL2.40ch00:17156362..17156679- functional_description:"Unknown Protein (AHRD V1)"; NbS00039096g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc01g005180.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:147437-147712 transcript_region:SL2.40ch01:147437..147712- functional_description:"Unknown Protein (AHRD V1)"; NbS00041805g0002.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|1|1|3|0|256; (*GB) gi|126959|sp|P21653.1|TIP1_TOBAC (e_value=5e-103) RecName: Full=Probable aquaporin TIP-type RB7-5A; AltName: Full=RT-TIP; AltName: Full=TobRB7; AltName: Full=Tonoplast intrinsic protein, root-specific RB7-5A;; (*SWP) sp|P21653|TIP1_TOBAC (e_value=2e-104) Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G17340.1 (e_value=8e-89) | Symbols: TIP2;2, DELTA-TIP2 | tonoplast intrinsic protein 2;2 | chr4:9699318-9700250 FORWARD LENGTH=250;; (*ITAG) Solyc06g060760.2.1 (e_value=5e-102) genomic_reference:SL2.40ch06 gene_region:35181267-35182590 transcript_region:SL2.40ch06:35181267..35182590+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q39956_HELAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00041805g0001.1 protein AED:0.18 eAED:0.57 QI:0|0|0.5|1|0|0.5|2|311|92; (*ITAG) Solyc06g060750.2.1 (e_value=5e-28) genomic_reference:SL2.40ch06 gene_region:35166187-35177784 transcript_region:SL2.40ch06:35166187..35177784+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00041805g0003.1 protein AED:0.35 eAED:0.35 QI:368|0.6|0.5|1|1|0.83|6|0|177; (*GB) gi|359495984|ref|XP_003635126.1| (e_value=2e-88) PREDICTED: formyltetrahydrofolate deformylase-like [Vitis vinifera];; (*SWP) sp|Q55135|PURU_SYNY3 (e_value=1e-32) Formyltetrahydrofolate deformylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=purU PE=3 SV=1;; (*TAIR) AT4G17360.1 (e_value=1e-82) | Symbols: | Formyl transferase | chr4:9703698-9705468 REVERSE LENGTH=328;; (*ITAG) Solyc06g060770.2.1 (e_value=1e-99) genomic_reference:SL2.40ch06 gene_region:35182936-35186634 transcript_region:SL2.40ch06:35182936..35186634- go_terms:GO:0005515 functional_description:"Methionyl-tRNA formyltransferase (AHRD V1 *-*- FMT_STAEQ); contains Interpro domain(s) IPR004810 Formyltetrahydrofolate deformylase "; GO:0005515 NbS00016685g0004.1 protein AED:0.08 eAED:0.08 QI:107|1|1|1|1|1|3|0|155; (*GB) gi|225425414|ref|XP_002277728.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100248862 [Vitis vinifera];; (*TAIR) AT1G27385.1 (e_value=3e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:9511129-9512820 REVERSE LENGTH=202;; (*ITAG) Solyc04g045580.2.1 (e_value=3e-66) genomic_reference:SL2.40ch04 gene_region:33219502-33220709 transcript_region:SL2.40ch04:33219502..33220709- functional_description:"Os04g0386500 protein (Fragment) (AHRD V1 ***- Q0JDQ2_ORYSJ); contains Interpro domain(s) IPR007454 Protein of unknown function DUF493 "; NbS00045068g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|326; (*GB) gi|333805715|gb|AEF98448.1| (e_value=1e-75) BRANCHED1A isoform 2 [Solanum tuberosum];; (*SWP) sp|Q9SBV9|CYCLD_ANTMH (e_value=4e-25) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. cirrhigerum GN=CYC PE=3 SV=1;; (*TAIR) AT1G68800.1 (e_value=6e-25) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc03g119770.2.1 (e_value=2e-67) genomic_reference:SL2.40ch03 gene_region:62381910-62383042 transcript_region:SL2.40ch03:62381910..62383042+ functional_description:"CYCLOIDEA-like (Fragment) (AHRD V1 *-*- Q2TKW2_9DIPS); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00014808g0004.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|359490920|ref|XP_002272298.2| (e_value=9e-128) PREDICTED: uncharacterized protein LOC100264587 [Vitis vinifera];; (*TAIR) AT5G23100.1 (e_value=1e-94) | Symbols: | Protein of unknown function, DUF617 | chr5:7753557-7754390 FORWARD LENGTH=277;; (*ITAG) Solyc03g114390.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00014808g0014.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|112; (*ITAG) Solyc03g114430.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58480040-58480369 transcript_region:SL2.40ch03:58480040..58480369- functional_description:"Unknown Protein (AHRD V1)"; NbS00014808g0015.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|142; (*GB) gi|224111766|ref|XP_002315971.1| (e_value=2e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ75|CML15_ARATH (e_value=1e-64) Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1;; (*TAIR) AT1G18530.1 (e_value=1e-65) | Symbols: | EF hand calcium-binding protein family | chr1:6376783-6377256 FORWARD LENGTH=157;; (*ITAG) Solyc03g114420.1.1 (e_value=2e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:58474677-58475192 transcript_region:SL2.40ch03:58474677..58475192- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6SJJ2_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00014808g0021.1 protein AED:0.37 eAED:0.37 QI:160|1|0.85|1|0.83|0.71|7|0|158; (*GB) gi|388497046|gb|AFK36589.1| (e_value=8e-92) unknown [Lotus japonicus];; (*SWP) sp|P49592|NC2B_ARATH (e_value=1e-85) Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1;; (*TAIR) AT5G23090.4 (e_value=2e-88) | Symbols: NF-YB13 | nuclear factor Y, subunit B13 | chr5:7749391-7750203 FORWARD LENGTH=158;; (*ITAG) Solyc06g069310.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:39454559-39458600 transcript_region:SL2.40ch06:39454559..39458600- go_terms:GO:0003700,GO:0003714 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 **-* B6UH02_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003700,GO:0003714 NbS00014808g0023.1 protein AED:0.10 eAED:0.10 QI:112|0.88|0.88|1|0.64|0.72|18|555|958; (*GB) gi|225455802|ref|XP_002271556.1| (e_value=0.0) PREDICTED: G patch domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q24K12|GPTC1_BOVIN (e_value=1e-27) G patch domain-containing protein 1 OS=Bos taurus GN=GPATCH1 PE=2 SV=1;; (*TAIR) AT5G23080.1 (e_value=0.0) | Symbols: TGH | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr5:7743226-7748889 REVERSE LENGTH=930;; (*ITAG) Solyc03g114410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58459455-58473996 transcript_region:SL2.40ch03:58459455..58473996+ go_terms:GO:0005515,GO:0003723 functional_description:"G-patch domain-containing protein (AHRD V1 *-*- C5GVR1_AJEDR); contains Interpro domain(s) IPR011666 Protein of unknown function DUF1604 "; GO:0005515,GO:0003723 NbS00014808g0024.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.83|0.85|7|129|783; (*GB) gi|225455818|ref|XP_002272451.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259414 [Vitis vinifera];; (*SWP) sp|Q7ZXX2|KIF19_XENLA (e_value=3e-97) Kinesin-like protein KIF19 OS=Xenopus laevis GN=kif19 PE=2 SV=1;; (*TAIR) AT1G18550.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr1:6381656-6384340 REVERSE LENGTH=725;; (*ITAG) Solyc03g114380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58435462-58440514 transcript_region:SL2.40ch03:58435462..58440514+ go_terms:GO:0007018 functional_description:"Kinesin family protein (AHRD V1 *-*- C5FSE4_NANOT); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00022260g0004.1 protein AED:0.17 eAED:0.27 QI:0|0|0|1|1|1|3|0|322; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-11) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00022260g0005.1 protein AED:0.29 eAED:0.30 QI:0|1|0|1|1|1|2|0|213; (*GB) gi|76161012|gb|ABA40469.1| (e_value=1e-110) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=1e-101) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=1e-102) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=1e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00018282g0018.1 protein AED:0.14 eAED:0.15 QI:0|0|0.25|1|0|0.25|4|12|651; (*GB) gi|224061919|ref|XP_002300664.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VXV7|LDL1_ARATH (e_value=5e-170) Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1;; (*TAIR) AT1G62830.1 (e_value=4e-171) | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like 1 | chr1:23264638-23267172 REVERSE LENGTH=844;; (*ITAG) Solyc11g008320.1.1 (e_value=2e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00018282g0019.1 protein AED:0.19 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|826; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-71) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G58807.2 (e_value=7e-63) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21780574-21783395 FORWARD LENGTH=855;; (*ITAG) Solyc10g047320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00018282g0007.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|0|0|2|81|120; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=5e-36) NRC1 [Solanum lycopersicum];; (*ITAG) Solyc10g047320.1.1 (e_value=2e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00018282g0021.1 protein AED:0.09 eAED:0.09 QI:0|1|0.8|1|1|1|5|0|300; (*GB) gi|255569800|ref|XP_002525864.1| (e_value=4e-155) abhydrolase domain containing, putative [Ricinus communis];; (*SWP) sp|Q1LZ86|ABHD6_BOVIN (e_value=3e-20) Monoacylglycerol lipase ABHD6 OS=Bos taurus GN=ABHD6 PE=2 SV=1;; (*TAIR) AT5G09430.1 (e_value=6e-152) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311;; (*ITAG) Solyc10g047340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36056292-36057424 transcript_region:SL2.40ch10:36056292..36057424+ go_terms:GO:0003824 functional_description:"Hydrolase (AHRD V1 ***- Q4PSG2_ARATH); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00018282g0024.1 protein AED:0.27 eAED:0.27 QI:90|0.83|0.76|1|0.58|0.69|13|646|566; (*GB) gi|225448253|ref|XP_002268888.1| (e_value=0.0) PREDICTED: outer envelope protein 64, mitochondrial [Vitis vinifera];; (*SWP) sp|F4KCL7|OE64M_ARATH (e_value=0.0) Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1;; (*TAIR) AT5G09420.1 (e_value=0.0) | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64 | translocon at the outer membrane of chloroplasts 64-V | chr5:2928316-2931750 FORWARD LENGTH=603;; (*ITAG) Solyc10g047300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35957327-35976314 transcript_region:SL2.40ch10:35957327..35976314+ go_terms:GO:0005515,GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 *-*- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0005515,GO:0004040 NbS00030506g0010.1 protein AED:0.05 eAED:0.05 QI:474|1|1|1|0|0.5|2|487|166; (*GB) gi|77745460|gb|ABB02629.1| (e_value=1e-48) unknown [Solanum tuberosum];; (*TAIR) AT5G16110.1 (e_value=4e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5261171-5262668 REVERSE LENGTH=244;; (*ITAG) Solyc06g069120.2.1 (e_value=8e-52) genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030506g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|225455928|ref|XP_002276899.1| (e_value=5e-89) PREDICTED: LOB domain-containing protein 41 [Vitis vinifera];; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=3e-74) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1;; (*TAIR) AT3G02550.1 (e_value=3e-75) | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263;; (*ITAG) Solyc03g119530.2.1 (e_value=1e-126) genomic_reference:SL2.40ch03 gene_region:62162997-62164121 transcript_region:SL2.40ch03:62162997..62164121+ functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00030506g0007.1 protein AED:0.01 eAED:0.01 QI:632|1|1|1|1|1|2|377|415; (*GB) gi|225455924|ref|XP_002276181.1| (e_value=1e-116) PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera];; (*SWP) sp|Q8LG76|COL6_ARATH (e_value=2e-76) Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2;; (*TAIR) AT1G68520.1 (e_value=2e-77) | Symbols: | B-box type zinc finger protein with CCT domain | chr1:25709331-25710749 REVERSE LENGTH=406;; (*ITAG) Solyc03g119540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62171978-62173730 transcript_region:SL2.40ch03:62171978..62173730- go_terms:GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP06_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00048149g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|66; (*ITAG) Solyc03g043630.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11072691-11072858 transcript_region:SL2.40ch03:11072691..11072858- functional_description:"Unknown Protein (AHRD V1)"; NbS00048149g0002.1 protein AED:0.55 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|72 NbS00048149g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|93 NbS00026439g0005.1 protein AED:0.21 eAED:0.21 QI:423|0.91|0.84|1|0.75|0.76|13|367|405; (*GB) gi|292677823|dbj|BAI99253.1| (e_value=0.0) trehalose 6-phosphate phosphatase [Nicotiana tabacum];; (*SWP) sp|O64896|TPPA_ARATH (e_value=0.0) Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana GN=TPPA PE=1 SV=1;; (*TAIR) AT5G51460.2 (e_value=0.0) | Symbols: ATTPPA | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:20902266-20904292 FORWARD LENGTH=384;; (*ITAG) Solyc03g083960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47442646-47445417 transcript_region:SL2.40ch03:47442646..47445417- go_terms:GO:0004805 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 **** D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0004805 NbS00026439g0007.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|0|0|3|0|243; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=2e-35) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00026439g0008.1 protein AED:0.41 eAED:0.79 QI:0|0|0|1|0|0|2|0|89; (*GB) gi|357119958|ref|XP_003561699.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100826101 [Brachypodium distachyon];; (*TAIR) AT3G62390.1 (e_value=4e-34) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00037784g0008.1 protein AED:0.05 eAED:0.06 QI:0|0.33|0.25|1|0.33|0.25|4|0|630; (*GB) gi|225444784|ref|XP_002278273.1| (e_value=0.0) PREDICTED: replication protein A 70 kDa DNA-binding subunit [Vitis vinifera];; (*SWP) sp|Q6NY74|RFA1_DANRE (e_value=6e-100) Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1;; (*TAIR) AT2G06510.1 (e_value=0.0) | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replication protein A 1A | chr2:2585215-2587601 FORWARD LENGTH=640;; (*ITAG) Solyc05g025590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:34409125-34412154 transcript_region:SL2.40ch05:34409125..34412154+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 **** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0003697 NbS00037784g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|224068412|ref|XP_002326114.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT2G06520.1 (e_value=2e-20) | Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116;; (*ITAG) Solyc05g025600.1.1 (e_value=1e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00061215g0007.1 protein AED:0.41 eAED:0.52 QI:185|0.66|0.75|1|0|0.5|4|0|91; (*GB) gi|225444912|ref|XP_002282032.1| (e_value=8e-26) PREDICTED: UPF0197 transmembrane protein C11orf10-like [Vitis vinifera];; (*TAIR) AT4G29735.1 (e_value=2e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14562962-14564277 REVERSE LENGTH=76;; (*ITAG) Solyc12g008860.1.1 (e_value=1e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2195406-2198052 transcript_region:SL2.40ch12:2195406..2198052- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007915 Uncharacterised protein family UPF0197 "; NbS00027702g0004.1 protein AED:0.21 eAED:0.21 QI:170|0.85|0.62|1|0.71|0.75|8|0|663; (*ITAG) Solyc06g083670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45302665-45305622 transcript_region:SL2.40ch06:45302665..45305622- functional_description:"Unknown Protein (AHRD V1)"; NbS00027696g0011.1 protein AED:0.23 eAED:0.23 QI:242|0.9|1|1|0.8|0.90|11|294|262; (*GB) gi|225447239|ref|XP_002278442.1| (e_value=3e-122) PREDICTED: secretory carrier-associated membrane protein 3 [Vitis vinifera];; (*SWP) sp|Q7F613|SCAM2_ORYSJ (e_value=3e-113) Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=3e-113) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc07g054490.2.1 (e_value=2e-153) genomic_reference:SL2.40ch07 gene_region:60121580-60126895 transcript_region:SL2.40ch07:60121580..60126895- go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00027696g0002.1 protein AED:0.35 eAED:0.35 QI:300|0.58|0.38|1|0.91|0.84|13|0|643; (*GB) gi|155008464|gb|ABS89271.1| (e_value=0.0) LRR receptor-like kinase [Solanum tuberosum];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=9e-142) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=7e-143) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc07g054500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60127645-60138369 transcript_region:SL2.40ch07:60127645..60138369- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00024597g0009.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|1|1|1|3|0|338; (*GB) gi|224140315|ref|XP_002323528.1| (e_value=1e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M331|PTR45_ARATH (e_value=6e-129) Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2;; (*TAIR) AT3G53960.1 (e_value=5e-130) | Symbols: | Major facilitator superfamily protein | chr3:19978306-19980886 REVERSE LENGTH=602;; (*ITAG) Solyc10g084950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00024597g0010.1 protein AED:0.29 eAED:0.40 QI:113|0.5|0.33|1|0.5|0.66|3|0|262; (*GB) gi|225440516|ref|XP_002272737.1| (e_value=4e-77) PREDICTED: probable peptide/nitrate transporter At3g53960 [Vitis vinifera];; (*SWP) sp|P0CI03|PTR28_ARATH (e_value=1e-66) Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1;; (*TAIR) AT2G37900.1 (e_value=1e-67) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084940.1.1 (e_value=3e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63613952-63616015 transcript_region:SL2.40ch10:63613952..63616015- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00030444g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|105 NbS00030444g0002.1 protein AED:0.30 eAED:0.32 QI:88|0.33|0.57|1|0.83|0.71|7|417|353; (*GB) gi|296082012|emb|CBI21017.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11270.1 (e_value=1e-22) | Symbols: OCP3 | overexpressor of cationic peroxidase 3 | chr5:3595557-3597076 REVERSE LENGTH=354;; (*ITAG) Solyc08g061140.2.1 (e_value=2e-60) genomic_reference:SL2.40ch08 gene_region:43998956-44003572 transcript_region:SL2.40ch08:43998956..44003572- go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox transcription factor (ISS) (AHRD V1 *-*- Q018M5_OSTTA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00061426g0005.1 protein AED:0.11 eAED:0.11 QI:207|0.5|0.6|1|1|1|5|232|852; (*GB) gi|224095457|ref|XP_002310397.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S0F0|FH1_ORYSJ (e_value=8e-170) Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1;; (*TAIR) AT3G25500.1 (e_value=5e-160) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc12g019480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:10578942-10583205 transcript_region:SL2.40ch12:10578942..10583205+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00061426g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|279; (*GB) gi|40557129|gb|AAR87851.1| (e_value=5e-93) fertilization-related kinase 2 [Solanum chacoense];; (*TAIR) AT4G36950.1 (e_value=1e-46) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc06g065790.1.1 (e_value=5e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004881g0002.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|524; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc02g093800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49088997-49094293 transcript_region:SL2.40ch02:49088997..49094293- go_terms:GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0019901 NbS00004881g0006.1 protein AED:0.30 eAED:0.30 QI:350|0.72|0.75|1|0.90|0.83|12|19|686; (*GB) gi|225452200|ref|XP_002266771.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243984 [Vitis vinifera];; (*TAIR) AT5G40740.1 (e_value=0.0) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741;; (*ITAG) Solyc02g093810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49096622-49102063 transcript_region:SL2.40ch02:49096622..49102063- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 ***- Q9FM25_ARATH)"; NbS00012118g0011.1 protein AED:0.14 eAED:0.14 QI:7|1|0.87|1|0.71|0.75|8|0|642; (*GB) gi|297737955|emb|CBI27156.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82178|PP186_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1;; (*TAIR) AT2G35130.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:14807589-14810164 REVERSE LENGTH=591;; (*ITAG) Solyc02g068760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33258394-33262534 transcript_region:SL2.40ch02:33258394..33262534- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LHS5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012118g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.66|3|621|152; (*GB) gi|225427633|ref|XP_002272724.1| (e_value=3e-59) PREDICTED: 50S ribosomal protein L30 isoform 1 [Vitis vinifera];; (*TAIR) AT5G55140.1 (e_value=2e-48) | Symbols: | ribosomal protein L30 family protein | chr5:22381370-22381787 FORWARD LENGTH=109;; (*ITAG) Solyc02g068770.2.1 (e_value=2e-76) genomic_reference:SL2.40ch02 gene_region:33264577-33268399 transcript_region:SL2.40ch02:33264577..33268399+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L30 (AHRD V1 --*- C0B6M9_9FIRM); contains Interpro domain(s) IPR005996 Ribosomal protein L30, bacterial-type "; GO:0005840,GO:0015934 NbS00012118g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|1|1|3|0|974; (*GB) gi|297737957|emb|CBI27158.3| (e_value=7e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G35140.3 (e_value=3e-42) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:14813990-14816808 FORWARD LENGTH=879;; (*ITAG) Solyc02g068780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33274430-33278046 transcript_region:SL2.40ch02:33274430..33278046+ functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00012118g0015.1 protein AED:0.52 eAED:0.76 QI:0|0|0|0.5|0|0|2|0|180; (*ITAG) Solyc02g068820.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012118g0014.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|87; (*ITAG) Solyc06g006040.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00025999g0009.1 protein AED:0.45 eAED:0.46 QI:0|0|0.5|1|0|0|2|0|153; (*GB) gi|81301636|ref|YP_398931.1| (e_value=8e-67) hypothetical protein NitoCp101 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BW4|YCF1_NICTO (e_value=2e-68) Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=3e-36) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021240.1.1 (e_value=7e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13394659-13394973 transcript_region:SL2.40ch11:13394659..13394973- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- B1A992_CARPA)"; NbS00025999g0008.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|3|0|225; (*GB) gi|225267|prf||1211235DC (e_value=1e-73) ORF 1244;; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-74) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021300.1.1 (e_value=5e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398023-13398556 transcript_region:SL2.40ch11:13398023..13398556+ functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00025999g0006.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|205; (*GB) gi|89280682|ref|YP_514899.1| (e_value=3e-122) hypothetical protein LyesCp068 [Solanum lycopersicum];; (*SWP) sp|Q2MI42|YCF1_SOLLC (e_value=5e-115) Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=2e-106) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021310.1.1 (e_value=9e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00025999g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|146; (*GB) gi|225200233|ref|YP_002720024.1| (e_value=3e-55) Ycf1 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-57) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=2e-26) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021310.1.1 (e_value=9e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00025999g0010.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|11466010|ref|NP_054552.1| (e_value=2e-28) hypothetical protein NitaCp078 [Nicotiana tabacum]; NbS00025999g0007.1 protein AED:0.52 eAED:0.53 QI:0|0|0|1|0|0|2|0|62 NbS00006685g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.8|1|0.88|0.8|10|409|277; (*GB) gi|225455380|ref|XP_002277839.1| (e_value=2e-133) PREDICTED: calcineurin B-like protein 04 [Vitis vinifera];; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=2e-110) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=5e-110) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc06g051970.2.1 (e_value=2e-147) genomic_reference:SL2.40ch06 gene_region:32132164-32135700 transcript_region:SL2.40ch06:32132164..32135700- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00006685g0010.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.25|1|0.33|0.5|4|170|356; (*GB) gi|379055945|emb|CCG06554.1| (e_value=0.0) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q9STN8|SINA4_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1;; (*TAIR) AT4G27880.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr4:13883623-13884927 FORWARD LENGTH=327;; (*ITAG) Solyc03g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00006685g0105.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|0.66|3|0|895 NbS00022635g0002.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|113; (*ITAG) Solyc03g034340.1.1 (e_value=4e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00022635g0003.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.25|1|1|4|0|202; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-17) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00022635g0009.1 protein AED:0.31 eAED:0.31 QI:172|0.66|0.71|0.85|0.33|0.42|7|555|231; (*GB) gi|335389847|gb|AEH57631.1| (e_value=9e-87) nucleoside diphosphate kinase [Solanum tuberosum];; (*SWP) sp|C6E0H6|NDK_GEOSM (e_value=1e-26) Nucleoside diphosphate kinase OS=Geobacter sp. (strain M21) GN=ndk PE=3 SV=1;; (*TAIR) AT1G17410.1 (e_value=7e-61) | Symbols: | Nucleoside diphosphate kinase family protein | chr1:5968627-5969780 REVERSE LENGTH=181;; (*ITAG) Solyc12g049370.1.1 (e_value=7e-97) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:46357605-46362081 transcript_region:SL2.40ch12:46357605..46362081+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- C6T1U7_SOYBN); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00022635g0008.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-17) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc09g059680.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00061737g0004.1 protein AED:0.00 eAED:0.00 QI:1460|1|1|1|1|1|2|214|406; (*GB) gi|5821138|dbj|BAA83711.1| (e_value=0.0) heat shock factor [Nicotiana tabacum];; (*SWP) sp|O49403|HFA4A_ARATH (e_value=4e-111) Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1;; (*TAIR) AT4G18880.1 (e_value=3e-112) | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription factor A4A | chr4:10347769-10349051 REVERSE LENGTH=401;; (*ITAG) Solyc03g006000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:678142-679948 transcript_region:SL2.40ch03:678142..679948+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00016890g0115.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.6|1|1|1|5|0|238 NbS00016890g0116.1 protein AED:0.27 eAED:0.43 QI:0|1|0|1|1|1|2|0|130 NbS00016890g0123.1 protein AED:0.22 eAED:0.38 QI:0|0|0|1|0.2|0.33|6|0|186 NbS00016890g0121.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.66|0.5|0.33|3|0|117 NbS00016890g0122.1 protein AED:0.17 eAED:0.28 QI:0|0|0|1|0|0|5|0|395 NbS00016890g0120.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|253 NbS00012177g0004.1 protein AED:0.00 eAED:0.00 QI:182|1|1|1|1|1|2|0|110; (*GB) gi|7406466|emb|CAB85568.1| (e_value=3e-18) 8-amino-7-oxononanoate synthase-like protein [Arabidopsis thaliana];; (*TAIR) AT5G04620.2 (e_value=6e-21) | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-1329934 FORWARD LENGTH=476;; (*ITAG) Solyc06g034150.2.1 (e_value=9e-31) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00022823g0014.1 protein AED:0.17 eAED:0.17 QI:126|1|1|1|1|1|3|350|254; (*GB) gi|225449374|ref|XP_002282374.1| (e_value=4e-108) PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=3e-67) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT5G05990.1 (e_value=4e-70) | Symbols: | Mitochondrial glycoprotein family protein | chr5:1806911-1807895 REVERSE LENGTH=259;; (*ITAG) Solyc03g079930.2.1 (e_value=2e-135) genomic_reference:SL2.40ch03 gene_region:45398282-45399790 transcript_region:SL2.40ch03:45398282..45399790- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7LDS6_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00022823g0010.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|125 NbS00022823g0015.1 protein AED:0.23 eAED:0.23 QI:270|0.85|0.85|1|0.95|0.90|21|427|736; (*GB) gi|344310987|gb|AEN04068.1| (e_value=0.0) delta-1-pyrroline-5-carboxylate synthetase [Solanum torvum];; (*SWP) sp|Q96480|P5CS_SOLLC (e_value=0.0) Delta-1-pyrroline-5-carboxylate synthase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1;; (*TAIR) AT2G39800.4 (e_value=0.0) | Symbols: P5CS1 | delta1-pyrroline-5-carboxylate synthase 1 | chr2:16598516-16602939 REVERSE LENGTH=717;; (*ITAG) Solyc06g019170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:14304192-14313233 transcript_region:SL2.40ch06:14304192..14313233- go_terms:GO:0004349,GO:0017084 functional_description:"Gamma-glutamyl phosphate reductase (AHRD V1 ***- D3TQ43_GLOMM); contains Interpro domain(s) IPR005766 Delta l-pyrroline-5-carboxylate synthetase "; GO:0004349,GO:0017084 NbS00017581g0004.1 protein AED:0.30 eAED:0.30 QI:0|1|0.6|1|1|1|5|0|205; (*GB) gi|359479577|ref|XP_002275146.2| (e_value=5e-105) PREDICTED: histone acetyltransferase GCN5-like [Vitis vinifera];; (*SWP) sp|Q338B9|GCN5_ORYSJ (e_value=3e-101) Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica GN=GCN5 PE=2 SV=1;; (*TAIR) AT3G54610.1 (e_value=9e-98) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045400.1.1 (e_value=4e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00030268g0005.1 protein AED:0.02 eAED:0.02 QI:47|1|1|1|1|1|4|274|129; (*GB) gi|224091949|ref|XP_002309412.1| (e_value=1e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03251|GRP8_ARATH (e_value=2e-20) Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1;; (*TAIR) AT5G06210.1 (e_value=2e-52) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:1878497-1879515 FORWARD LENGTH=146;; (*ITAG) Solyc10g083240.1.1 (e_value=6e-72) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:62415637-62418815 transcript_region:SL2.40ch10:62415637..62418815- go_terms:GO:0017091 functional_description:"RNA-binding protein (AHRD V1 **** Q941H9_TOBAC); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0017091 NbS00015928g0016.1 protein AED:0.28 eAED:0.28 QI:205|1|0.75|1|1|1|4|0|129; (*GB) gi|38344141|emb|CAD41861.2| (e_value=4e-62) OSJNBa0041A02.8 [Oryza sativa Japonica Group];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-22) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT2G33430.1 (e_value=4e-63) | Symbols: DAL1, DAL | differentiation and greening-like 1 | chr2:14162732-14164729 FORWARD LENGTH=219;; (*ITAG) Solyc06g008220.2.1 (e_value=2e-65) genomic_reference:SL2.40ch06 gene_region:2097959-2101060 transcript_region:SL2.40ch06:2097959..2101060+ functional_description:"DAG protein (AHRD V1 **-- B6TEQ2_MAIZE)"; NbS00015928g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|189; (*GB) gi|255577930|ref|XP_002529837.1| (e_value=1e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03982.1 (e_value=3e-17) | Symbols: | PAK-box/P21-Rho-binding family protein | chr1:1022424-1023136 REVERSE LENGTH=177;; (*ITAG) Solyc06g008240.2.1 (e_value=1e-72) genomic_reference:SL2.40ch06 gene_region:2116193-2118881 transcript_region:SL2.40ch06:2116193..2118881- functional_description:"Rop-interactive crib motif-containing protein 3 (AHRD V1 *--- D7KDE9_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00015928g0018.1 protein AED:0.15 eAED:0.15 QI:648|0.83|0.71|1|0.5|0.14|7|550|712; (*GB) gi|147798498|emb|CAN65476.1| (e_value=0.0) hypothetical protein VITISV_018246 [Vitis vinifera];; (*SWP) sp|Q86TV6|TTC7B_HUMAN (e_value=1e-17) Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3;; (*TAIR) AT4G28600.1 (e_value=0.0) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc06g008230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2101453-2108159 transcript_region:SL2.40ch06:2101453..2108159- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* Q7XJB9_ORYSI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00015928g0026.1 protein AED:0.22 eAED:0.22 QI:0|0.72|0.75|0.91|0.54|0.66|12|351|415; (*GB) gi|359480030|ref|XP_002272358.2| (e_value=0.0) PREDICTED: TBC1 domain family member 25-like [Vitis vinifera];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=3e-22) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT2G20440.2 (e_value=1e-167) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:8811034-8813251 REVERSE LENGTH=425;; (*ITAG) Solyc06g008250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2120441-2130757 transcript_region:SL2.40ch06:2120441..2130757- go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 **-- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00015928g0017.1 protein AED:0.32 eAED:0.46 QI:0|0.66|0|1|1|1|4|0|88; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=1e-43) D1 protease precursor [Nicotiana plumbaginifolia];; (*TAIR) AT4G17740.2 (e_value=1e-39) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00013519g0008.1 protein AED:0.38 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|118; (*GB) gi|224110258|ref|XP_002315463.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96321|IMA1_ARATH (e_value=7e-47) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT3G06720.2 (e_value=5e-48) | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532;; (*ITAG) Solyc08g041890.2.1 (e_value=2e-54) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00013519g0007.1 protein AED:0.31 eAED:0.37 QI:0|0|0|1|0|0|3|0|176; (*GB) gi|218196127|gb|EEC78554.1| (e_value=7e-71) hypothetical protein OsI_18524 [Oryza sativa Indica Group];; (*SWP) sp|Q9SLX0|IMA1B_ORYSJ (e_value=6e-72) Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2;; (*TAIR) AT3G06720.2 (e_value=2e-70) | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | importin alpha isoform 1 | chr3:2120559-2123555 FORWARD LENGTH=532;; (*ITAG) Solyc08g041890.2.1 (e_value=5e-74) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00027132g0003.1 protein AED:0.01 eAED:0.01 QI:223|1|1|1|1|1|3|239|234; (*GB) gi|296090659|emb|CBI41059.3| (e_value=9e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46604|HAT22_ARATH (e_value=2e-74) Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1;; (*TAIR) AT4G37790.1 (e_value=1e-75) | Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278;; (*ITAG) Solyc02g063520.2.1 (e_value=3e-101) genomic_reference:SL2.40ch02 gene_region:30194476-30196002 transcript_region:SL2.40ch02:30194476..30196002+ go_terms:GO:0030296,GO:0043565 functional_description:"Homeobox-leucine zipper protein 22 (AHRD V1 ***- D7MA03_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0030296,GO:0043565 NbS00047141g0005.1 protein AED:0.26 eAED:0.26 QI:124|1|1|1|0.92|0.92|14|415|383; (*GB) gi|225442918|ref|XP_002264742.1| (e_value=0.0) PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9LKJ1|HIBC1_ARATH (e_value=0.0) 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1;; (*TAIR) AT5G65940.1 (e_value=0.0) | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | chr5:26376830-26379161 REVERSE LENGTH=378;; (*ITAG) Solyc01g080930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72778912-72788934 transcript_region:SL2.40ch01:72778912..72788934- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00021117g0008.1 protein AED:0.04 eAED:0.04 QI:237|0.75|0.8|1|1|0.8|5|0|875; (*GB) gi|255538872|ref|XP_002510501.1| (e_value=5e-149) hypothetical protein RCOM_1596950 [Ricinus communis];; (*SWP) sp|Q9FXI5|IQD32_ARATH (e_value=5e-101) Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3;; (*TAIR) AT1G19870.1 (e_value=4e-102) | Symbols: iqd32 | IQ-domain 32 | chr1:6895400-6898539 REVERSE LENGTH=794;; (*ITAG) Solyc04g081210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62803374-62809165 transcript_region:SL2.40ch04:62803374..62809165+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein IQ (AHRD V1 *--* A8CF59_BRACM); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00021117g0011.1 protein AED:0.25 eAED:0.25 QI:112|1|1|1|0|0.5|2|25|128; (*GB) gi|224122184|ref|XP_002318772.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT5G39600.1 (e_value=3e-74) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:15854188-15854771 REVERSE LENGTH=127;; (*ITAG) Solyc04g081220.2.1 (e_value=2e-90) genomic_reference:SL2.40ch04 gene_region:62809677-62812674 transcript_region:SL2.40ch04:62809677..62812674+ functional_description:"Genomic DNA chromosome 5 P1 clone MIJ24 (AHRD V1 ***- Q9FKA2_ARATH); contains Interpro domain(s) IPR019716 Ribosomal protein L53, mitochondrial "; NbS00000594g0005.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0.44|1|0|0|9|341|312; (*GB) gi|255540167|ref|XP_002511148.1| (e_value=8e-90) palmitoyl-acyl carrier protein thioesterase [Ricinus communis];; (*SWP) sp|Q9SQI3|FATB_GOSHI (e_value=3e-56) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1;; (*TAIR) AT1G08510.1 (e_value=2e-55) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc03g097390.2.1 (e_value=1e-118) genomic_reference:SL2.40ch03 gene_region:53172933-53174981 transcript_region:SL2.40ch03:53172933..53174981- go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** Q9FQY1_IRIGE); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00020837g0006.1 protein AED:0.36 eAED:0.53 QI:64|0|0|1|0|0.5|2|0|60; (*GB) gi|388492524|gb|AFK34328.1| (e_value=5e-19) unknown [Lotus japonicus];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=9e-19) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=7e-20) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064610.2.1 (e_value=3e-21) genomic_reference:SL2.40ch04 gene_region:54892730-54894564 transcript_region:SL2.40ch04:54892730..54894564- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROPS); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00020837g0004.1 protein AED:0.33 eAED:0.67 QI:0|0|0|1|1|1|2|0|96; (*GB) gi|356515971|ref|XP_003526670.1| (e_value=2e-18) PREDICTED: bidirectional sugar transporter SWEET1-like [Glycine max];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=8e-18) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=6e-19) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064610.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:54892730-54894564 transcript_region:SL2.40ch04:54892730..54894564- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROPS); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00018771g0105.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|220 NbS00018771g0102.1 protein AED:0.08 eAED:0.08 QI:29|1|1|1|0.6|0.5|6|105|415 NbS00018771g0115.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|0.72|0.66|12|0|631 NbS00018771g0116.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.25|0.66|0.75|4|0|181 NbS00010063g0003.1 protein AED:0.16 eAED:0.20 QI:0|0|0|1|1|1|2|0|244; (*GB) gi|224110654|ref|XP_002315592.1| (e_value=3e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9DC48|PRP17_MOUSE (e_value=4e-57) Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1;; (*TAIR) AT1G10580.1 (e_value=2e-100) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3491560-3493665 REVERSE LENGTH=573;; (*ITAG) Solyc02g078970.2.1 (e_value=2e-120) genomic_reference:SL2.40ch02 gene_region:38153830-38158196 transcript_region:SL2.40ch02:38153830..38158196- go_terms:GO:0003676 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (AHRD V1 *--* GBB1_DANRE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003676 NbS00031931g0001.1 protein AED:0.40 eAED:0.40 QI:84|1|1|1|0.5|0.33|3|422|90 NbS00031931g0002.1 protein AED:0.44 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|134; (*ITAG) Solyc04g053070.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00031931g0003.1 protein AED:0.09 eAED:0.10 QI:94|1|0.5|1|0|0|2|0|368; (*GB) gi|255582026|ref|XP_002531810.1| (e_value=1e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G08600.1 (e_value=3e-62) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc10g074820.1.1 (e_value=1e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57851557-57852507 transcript_region:SL2.40ch10:57851557..57852507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00024380g0007.1 protein AED:0.18 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|233; (*GB) gi|255539487|ref|XP_002510808.1| (e_value=1e-102) steroid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9M2Z4|MSBP2_ARATH (e_value=2e-94) Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1;; (*TAIR) AT3G48890.1 (e_value=1e-95) | Symbols: ATMP2, ATMAPR3, MSBP2, MAPR3 | membrane-associated progesterone binding protein 3 | chr3:18129669-18131353 FORWARD LENGTH=233;; (*ITAG) Solyc03g025950.2.1 (e_value=3e-118) genomic_reference:SL2.40ch03 gene_region:7764256-7767163 transcript_region:SL2.40ch03:7764256..7767163+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 ***- C0NU44_AJECG); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00024380g0008.1 protein AED:0.35 eAED:0.39 QI:0|0.33|0.42|0.85|0.33|0.57|7|423|338; (*GB) gi|224141007|ref|XP_002323867.1| (e_value=1e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT3G29010.1 (e_value=6e-93) | Symbols: | Biotin/lipoate A/B protein ligase family | chr3:11006945-11007977 FORWARD LENGTH=262;; (*ITAG) Solyc06g065310.2.1 (e_value=7e-114) genomic_reference:SL2.40ch06 gene_region:37116097-37120621 transcript_region:SL2.40ch06:37116097..37120621- go_terms:GO:0006464 functional_description:"Lipoate protein ligase-like protein (AHRD V1 ***- Q9MBG4_ARATH); contains Interpro domain(s) IPR004143 Biotin/lipoate A/B protein ligase "; GO:0006464 NbS00014818g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.87|0.88|1|0.87|0.94|17|7|746; (*GB) gi|183238712|gb|ACC60982.1| (e_value=0.0) beta-galactosidase 2 precursor [Petunia x hybrida];; (*SWP) sp|Q9SCV1|BGA11_ARATH (e_value=0.0) Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1;; (*TAIR) AT4G35010.1 (e_value=0.0) | Symbols: BGAL11 | beta-galactosidase 11 | chr4:16668075-16671974 REVERSE LENGTH=845;; (*ITAG) Solyc10g055470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52292105-52295932 transcript_region:SL2.40ch10:52292105..52295932- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B2LYJ4_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00014818g0012.1 protein AED:0.00 eAED:0.00 QI:260|1|1|1|0.5|0.33|3|285|255; (*GB) gi|225428029|ref|XP_002278836.1| (e_value=1e-112) PREDICTED: uncharacterized protein LOC100243471 [Vitis vinifera];; (*TAIR) AT2G16770.1 (e_value=2e-95) | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249;; (*ITAG) Solyc01g111580.2.1 (e_value=7e-125) genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00014818g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|283; (*GB) gi|225428035|ref|XP_002277843.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100262284 [Vitis vinifera];; (*TAIR) AT4G35070.1 (e_value=1e-52) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:16694488-16695387 FORWARD LENGTH=265;; (*ITAG) Solyc10g055560.1.1 (e_value=4e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52439261-52440158 transcript_region:SL2.40ch10:52439261..52440158+ go_terms:GO:0051536,GO:0008270 functional_description:"Baculoviral IAP repeat-containing 3 (AHRD V1 *--- A2CGA5_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0051536,GO:0008270 NbS00035319g0006.1 protein AED:0.10 eAED:0.10 QI:279|1|1|1|1|1|2|477|321; (*GB) gi|224111416|ref|XP_002315847.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7U5|HSFA8_ARATH (e_value=1e-74) Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1;; (*TAIR) AT1G67970.1 (e_value=9e-76) | Symbols: AT-HSFA8, HSFA8 | heat shock transcription factor A8 | chr1:25484844-25486313 REVERSE LENGTH=374;; (*ITAG) Solyc09g059520.2.1 (e_value=3e-158) genomic_reference:SL2.40ch09 gene_region:50372011-50379351 transcript_region:SL2.40ch09:50372011..50379351- go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00003240g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.87|0.66|1|0.87|0.55|9|173|628; (*GB) gi|225466249|ref|XP_002268272.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein ROC8 [Vitis vinifera];; (*SWP) sp|Q69T58|ROC8_ORYSJ (e_value=3e-164) Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica GN=ROC8 PE=2 SV=2;; (*TAIR) AT1G73360.1 (e_value=4e-156) | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722;; (*ITAG) Solyc11g011940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4868757-4876927 transcript_region:SL2.40ch11:4868757..4876927+ go_terms:GO:0043565,GO:0003700 functional_description:"Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (AHRD V1 **** PDF2_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565,GO:0003700 NbS00019872g0005.1 protein AED:0.33 eAED:0.33 QI:37|0.4|0.66|1|1|1|6|123|180; (*GB) gi|297792427|ref|XP_002864098.1| (e_value=7e-21) hypothetical protein ARALYDRAFT_495181 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G51130.1 (e_value=2e-23) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20781896-20783901 FORWARD LENGTH=318;; (*ITAG) Solyc05g050000.2.1 (e_value=2e-34) genomic_reference:SL2.40ch05 gene_region:58997556-59001737 transcript_region:SL2.40ch05:58997556..59001737- go_terms:GO:0004652 functional_description:"Bicoid-interacting 3 domain-containing protein (Fragment) (AHRD V1 *-*- C6F7A2_PSEMZ); contains Interpro domain(s) IPR010675 Bicoid-interacting 3 "; GO:0004652 NbS00019872g0006.1 protein AED:0.33 eAED:0.59 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|357520925|ref|XP_003630751.1| (e_value=5e-21) hypothetical protein MTR_8g102920 [Medicago truncatula];; (*TAIR) AT5G19570.1 (e_value=2e-20) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6606739-6607152 FORWARD LENGTH=137;; (*ITAG) Solyc11g006870.1.1 (e_value=5e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1414904-1415302 transcript_region:SL2.40ch11:1414904..1415302- functional_description:"Novel protein similar to H.sapiens C1orf91 chromosome 1 open reading frame 91 (C1orf91) (AHRD V1 **-- B8A4M3_DANRE); contains Interpro domain(s) IPR018908 Uncharacterised protein family UPF0546 "; NbS00019872g0007.1 protein AED:0.00 eAED:0.00 QI:255|1|1|1|0|0|2|206|75 NbS00016613g0001.1 protein AED:0.22 eAED:0.25 QI:4|-1|0|1|-1|1|1|0|454; (*GB) gi|122211500|sp|Q307Y9.1|METK1_SOLTU (e_value=0.0) RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1;; (*SWP) sp|Q307Y9|METK1_SOLTU (e_value=0.0) S-adenosylmethionine synthase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1;; (*TAIR) AT3G17390.1 (e_value=0.0) | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine synthetase family protein | chr3:5952484-5953665 REVERSE LENGTH=393;; (*ITAG) Solyc01g101060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00037709g0016.1 protein AED:0.09 eAED:0.11 QI:0|0.8|0.5|1|0.8|0.83|6|272|218; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-76) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00037709g0013.1 protein AED:0.20 eAED:0.20 QI:61|0.6|0.5|1|1|1|6|0|477; (*GB) gi|359495786|ref|XP_002272586.2| (e_value=3e-144) PREDICTED: uncharacterized protein LOC100248980 [Vitis vinifera];; (*TAIR) AT4G37210.1 (e_value=3e-68) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17512376-17514421 FORWARD LENGTH=492;; (*ITAG) Solyc02g090090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46298779-46304517 transcript_region:SL2.40ch02:46298779..46304517- functional_description:"TPR domain containing protein (AHRD V1 ***- B6TDD9_MAIZE); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; NbS00037709g0008.1 protein AED:0.63 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|84 NbS00027309g0001.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|388514861|gb|AFK45492.1| (e_value=1e-32) unknown [Lotus japonicus];; (*ITAG) Solyc06g054470.1.1 (e_value=6e-51) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33725929-33726480 transcript_region:SL2.40ch06:33725929..33726480- functional_description:"Unknown Protein (AHRD V1)"; NbS00035024g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|118481397|gb|ABK92641.1| (e_value=8e-93) unknown [Populus trichocarpa];; (*SWP) sp|Q7F8S5|PR2E2_ORYSJ (e_value=2e-86) Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1;; (*TAIR) AT3G52960.1 (e_value=5e-87) | Symbols: | Thioredoxin superfamily protein | chr3:19639699-19640403 FORWARD LENGTH=234;; (*ITAG) Solyc10g083650.1.1 (e_value=4e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62763114-62763800 transcript_region:SL2.40ch10:62763114..62763800- go_terms:GO:0016491,GO:0045454 functional_description:"Peroxiredoxin ahpC/TSA family (AHRD V1 **-- Q1YGN4_MOBAS); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00035024g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|4|0|297; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-40) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g016610.1.1 (e_value=5e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7903101-7906221 transcript_region:SL2.40ch08:7903101..7906221- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00059294g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|297803984|ref|XP_002869876.1| (e_value=2e-16) hypothetical protein ARALYDRAFT_914508 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G21620.2 (e_value=3e-19) | Symbols: | glycine-rich protein | chr4:11491519-11491914 FORWARD LENGTH=98;; (*ITAG) Solyc10g009190.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3186982-3187359 transcript_region:SL2.40ch10:3186982..3187359- functional_description:"Cold shock protein-1 (AHRD V1 *-*- B6SP63_MAIZE)"; NbS00008476g0004.1 protein AED:0.19 eAED:0.19 QI:1534|0.77|0.7|0.9|0.44|0.5|10|0|178; (*GB) gi|62321615|dbj|BAD95204.1| (e_value=5e-65) putative protein [Arabidopsis thaliana];; (*SWP) sp|A4YCR6|EF1A_METS5 (e_value=2e-20) Elongation factor 1-alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=tuf PE=3 SV=1;; (*TAIR) AT5G10630.1 (e_value=9e-65) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=1e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00000875g0003.1 protein AED:0.20 eAED:0.20 QI:43|0.5|0.71|0.85|0.66|0.71|7|600|312; (*GB) gi|224112921|ref|XP_002316331.1| (e_value=3e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2NTS8|PGSA_SODGM (e_value=3e-22) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Sodalis glossinidius (strain morsitans) GN=pgsA PE=3 SV=1;; (*TAIR) AT2G39290.1 (e_value=7e-66) | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate synthase 1 | chr2:16407274-16408840 FORWARD LENGTH=296;; (*ITAG) Solyc04g009580.2.1 (e_value=1e-95) genomic_reference:SL2.40ch04 gene_region:2975791-2980078 transcript_region:SL2.40ch04:2975791..2980078+ go_terms:GO:0008444 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-** PGSA_SODGM); contains Interpro domain(s) IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase "; GO:0008444 NbS00019978g0001.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|229; (*GB) gi|224146222|ref|XP_002325927.1| (e_value=2e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05250.1 (e_value=3e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1557116-1557835 REVERSE LENGTH=239;; (*ITAG) Solyc06g049020.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:28759229-28759888 transcript_region:SL2.40ch06:28759229..28759888- functional_description:"Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848 (AHRD V1 ***- C7IVU8_9POAL)"; NbS00019978g0003.1 protein AED:0.34 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=2e-58) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=2e-40) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=1e-41) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019978g0004.1 protein AED:0.34 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=2e-58) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=2e-40) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=1e-41) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016767g0002.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.57|1|1|7|0|315; (*GB) gi|255574883|ref|XP_002528348.1| (e_value=1e-66) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*TAIR) AT1G04530.1 (e_value=8e-30) | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1234456-1235895 REVERSE LENGTH=310;; (*ITAG) Solyc09g090930.2.1 (e_value=1e-88) genomic_reference:SL2.40ch09 gene_region:65677871-65682183 transcript_region:SL2.40ch09:65677871..65682183+ go_terms:GO:0005488,GO:0005622 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00016767g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|158|84 NbS00016767g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|224065545|ref|XP_002301850.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FNC9|TO222_ARATH (e_value=1e-26) Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3;; (*TAIR) AT5G43970.1 (e_value=8e-28) | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase of outer membrane 22-V | chr5:17692888-17693187 FORWARD LENGTH=99;; (*ITAG) Solyc03g005700.1.1 (e_value=7e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:500219-500521 transcript_region:SL2.40ch03:500219..500521- go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM22 (AHRD V1 ***- B6U2X6_MAIZE)"; GO:0015450 NbS00016767g0111.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|514 NbS00016767g0103.1 protein AED:0.00 eAED:0.00 QI:125|0|0.5|1|0|0.5|2|648|92 NbS00016767g0102.1 protein AED:0.24 eAED:0.24 QI:157|0.92|1|1|1|1|14|284|455 NbS00021253g0005.1 protein AED:0.24 eAED:0.26 QI:169|1|0.75|1|1|1|4|0|331; (*GB) gi|384157481|gb|AFH68208.1| (e_value=6e-109) transcription factor bHLH [Vitis amurensis];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=1e-78) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=1e-79) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc00g050430.2.1 (e_value=8e-168) genomic_reference:SL2.40ch00 gene_region:13663836-13666165 transcript_region:SL2.40ch00:13663836..13666165+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00005888g0018.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|1|0.5|0.33|3|0|473; (*GB) gi|113205383|gb|AAU93590.2| (e_value=4e-132) Late blight resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=5e-125) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-56) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005888g0015.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0|1|0|0|3|0|256; (*GB) gi|48057658|gb|AAT39957.1| (e_value=9e-32) Putative late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-22) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc05g012910.2.1 (e_value=5e-87) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005888g0016.1 protein AED:0.48 eAED:0.50 QI:0|0|0|0.66|0.12|0.22|9|0|597; (*ITAG) Solyc05g012890.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005888g0017.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|0|0.66|3|0|194; (*GB) gi|113205250|gb|AAT39962.2| (e_value=1e-22) Late blight resistance protein, putative [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=1e-11) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g012890.1.1 (e_value=5e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005888g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0.2|0.8|1|1|5|0|127; (*GB) gi|2653879|gb|AAB87670.1| (e_value=2e-26) adenyl cyclase [Nicotiana tabacum];; (*TAIR) AT4G15640.1 (e_value=1e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8919245-8921852 REVERSE LENGTH=390;; (*ITAG) Solyc07g041930.2.1 (e_value=1e-24) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00005888g0014.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|0|0|3|0|303; (*GB) gi|48057658|gb|AAT39957.1| (e_value=5e-37) Putative late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=5e-29) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc05g012910.2.1 (e_value=6e-61) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005888g0013.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|106; (*GB) gi|350536959|ref|NP_001234273.1| (e_value=7e-23) JJH-R-like protein [Solanum lycopersicum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=3e-17) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc05g012900.2.1 (e_value=1e-25) genomic_reference:SL2.40ch05 gene_region:6036922-6038155 transcript_region:SL2.40ch05:6036922..6038155+ functional_description:"Lrr, resistance protein fragment"; NbS00013906g0007.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|627; (*GB) gi|359495321|ref|XP_002271188.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266793 [Vitis vinifera];; (*SWP) sp|Q55874|Y103_SYNY3 (e_value=2e-15) Uncharacterized protein sll0103 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0103 PE=4 SV=1;; (*TAIR) AT2G38970.1 (e_value=1e-169) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692;; (*ITAG) Solyc02g069470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33920445-33924829 transcript_region:SL2.40ch02:33920445..33924829- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00013906g0015.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.83|1|1|6|0|603; (*GB) gi|302127798|emb|CBP07430.1| (e_value=0.0) sterol reductase [Solanum tuberosum];; (*SWP) sp|P93472|DIM_PEA (e_value=0.0) Delta(24)-sterol reductase OS=Pisum sativum GN=DIM PE=1 SV=1;; (*TAIR) AT3G19820.3 (e_value=0.0) | Symbols: DWF1 | cell elongation protein / DWARF1 / DIMINUTO (DIM) | chr3:6879835-6881616 REVERSE LENGTH=561;; (*ITAG) Solyc02g030170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15953224-15955598 transcript_region:SL2.40ch02:15953224..15955598- go_terms:GO:0042605,GO:0019899 functional_description:"FAD linked oxidase domain protein (AHRD V1 **-- D1VPW7_9ACTO); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0042605,GO:0019899 NbS00013906g0026.1 protein AED:0.31 eAED:0.35 QI:0|0.5|0.2|1|0.75|0.6|5|0|170; (*GB) gi|255578061|ref|XP_002529901.1| (e_value=4e-86) UDP-glucose 4-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9SUN3|ARAE3_ARATH (e_value=4e-82) Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=3;; (*TAIR) AT4G20460.1 (e_value=3e-83) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:11029767-11031765 REVERSE LENGTH=411;; (*ITAG) Solyc02g030230.2.1 (e_value=1e-94) genomic_reference:SL2.40ch02 gene_region:16032723-16037908 transcript_region:SL2.40ch02:16032723..16037908- go_terms:GO:0050373,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B1XPB1_SYNP2); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0050373,GO:0042803 NbS00013906g0025.1 protein AED:0.43 eAED:0.63 QI:0|0|0|0.75|0.33|0.5|4|0|145; (*GB) gi|3033381|gb|AAC12825.1| (e_value=1e-28) putative UDP-galactose-4-epimerase [Arabidopsis thaliana];; (*SWP) sp|Q8H0B2|ARAE3_ORYSJ (e_value=6e-29) Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1;; (*TAIR) AT1G30620.2 (e_value=2e-29) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc02g069580.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:34003786-34009927 transcript_region:SL2.40ch02:34003786..34009927- go_terms:GO:0048040,GO:0050373 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B1XPB1_SYNP2); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0048040,GO:0050373 NbS00013906g0029.1 protein AED:0.21 eAED:0.25 QI:0|0.5|0.33|0.88|0.62|0.55|9|0|388; (*GB) gi|255577250|ref|XP_002529507.1| (e_value=3e-113) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GWK2|AP2L4_ARATH (e_value=2e-78) AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2;; (*TAIR) AT2G41710.1 (e_value=4e-82) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:17400274-17402903 REVERSE LENGTH=423;; (*ITAG) Solyc02g030210.2.1 (e_value=5e-160) genomic_reference:SL2.40ch02 gene_region:16023195-16026741 transcript_region:SL2.40ch02:16023195..16026741+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At2g41710 (AHRD V1 ***- AP2L4_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00013906g0024.1 protein AED:0.49 eAED:0.52 QI:0|0|0.5|1|0|0|2|104|67 NbS00013906g0028.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|109; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=7e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00040935g0004.1 protein AED:0.17 eAED:0.25 QI:0|0.87|0.88|1|0.62|0.66|9|365|619; (*GB) gi|225433298|ref|XP_002282340.1| (e_value=0.0) PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|B9SQR9|GATB_RICCO (e_value=0.0) Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis GN=GATB PE=3 SV=1;; (*TAIR) AT1G48520.1 (e_value=0.0) | Symbols: GATB | GLU-ADT subunit B | chr1:17940185-17942540 FORWARD LENGTH=550;; (*ITAG) Solyc09g090840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65590245-65596715 transcript_region:SL2.40ch09:65590245..65596715+ go_terms:GO:0008135,GO:0050567 functional_description:"Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (AHRD V1 ***- D4ZRW8_SPIPL); contains Interpro domain(s) IPR004413 Glutamyl-tRNA(Gln) amidotransferase, B subunit "; GO:0008135,GO:0050567 NbS00015972g0001.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|320; (*GB) gi|357495777|ref|XP_003618177.1| (e_value=1e-15) Agamous-like MADS-box protein AGL36 [Medicago truncatula];; (*TAIR) AT5G55690.1 (e_value=2e-13) | Symbols: | MADS-box transcription factor family protein | chr5:22548790-22549623 REVERSE LENGTH=277;; (*ITAG) Solyc11g020320.1.1 (e_value=9e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10842641-10843468 transcript_region:SL2.40ch11:10842641..10843468- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRQ1_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00015972g0005.1 protein AED:0.80 eAED:0.94 QI:0|0|0|0.66|1|1|3|0|108 NbS00058649g0003.1 protein AED:0.43 eAED:0.47 QI:0|1|0|1|0|0|2|0|111; (*GB) gi|74474915|dbj|BAE44441.1| (e_value=4e-42) dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum];; (*SWP) sp|Q9ZR37|DUS1_ARATH (e_value=4e-30) Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana GN=DSPTP1 PE=1 SV=1;; (*TAIR) AT3G23610.2 (e_value=2e-31) | Symbols: DSPTP1 | dual specificity protein phosphatase 1 | chr3:8478280-8479641 FORWARD LENGTH=201;; (*ITAG) Solyc01g080040.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:71668125-71675546 transcript_region:SL2.40ch01:71668125..71675546+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase (AHRD V1 ***- D7L3D2_ARALY); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00015242g0008.1 protein AED:0.10 eAED:0.10 QI:108|1|0.66|1|0.5|0|3|0|225; (*GB) gi|225448621|ref|XP_002279029.1| (e_value=2e-87) PREDICTED: LOB domain-containing protein 15 [Vitis vinifera];; (*SWP) sp|Q8L5T5|LBD15_ARATH (e_value=7e-72) LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2;; (*TAIR) AT2G40470.1 (e_value=6e-73) | Symbols: LBD15, ASL11 | LOB domain-containing protein 15 | chr2:16902430-16903546 REVERSE LENGTH=224;; (*ITAG) Solyc06g050430.2.1 (e_value=6e-90) genomic_reference:SL2.40ch06 gene_region:29519658-29520883 transcript_region:SL2.40ch06:29519658..29520883- go_terms:GO:0005515 functional_description:"LOB domain protein 25 (AHRD V1 ***- B6U340_MAIZE); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00028672g0008.1 protein AED:0.06 eAED:0.07 QI:0|0.66|0.6|0.9|1|1|10|0|1083; (*GB) gi|225428013|ref|XP_002278408.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=0.0) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc10g055450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52249650-52261711 transcript_region:SL2.40ch10:52249650..52261711+ go_terms:GO:0005488,GO:0005622 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-*- D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0005488,GO:0005622 NbS00028672g0009.1 protein AED:0.37 eAED:0.37 QI:0|0.2|0|0.33|1|1|6|0|754; (*GB) gi|225428013|ref|XP_002278408.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=0.0) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc10g055450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52249650-52261711 transcript_region:SL2.40ch10:52249650..52261711+ go_terms:GO:0005488,GO:0005622 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-*- D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0005488,GO:0005622 NbS00002777g0014.1 protein AED:0.13 eAED:0.14 QI:0|1|0.93|1|1|1|15|0|581; (*GB) gi|255573771|ref|XP_002527806.1| (e_value=0.0) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q8VYT2|CAP6_ARATH (e_value=0.0) Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1;; (*TAIR) AT4G25940.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:13169792-13172700 REVERSE LENGTH=601;; (*ITAG) Solyc02g043810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22303511-22307099 transcript_region:SL2.40ch02:22303511..22307099+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00002777g0016.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|0.75|4|21|174; (*GB) gi|297735417|emb|CBI17857.3| (e_value=3e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65570|VILI4_ARATH (e_value=2e-83) Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1;; (*TAIR) AT4G30160.1 (e_value=1e-84) | Symbols: VLN4, ATVLN4 | villin 4 | chr4:14754528-14759511 FORWARD LENGTH=974;; (*ITAG) Solyc02g021420.2.1 (e_value=5e-105) genomic_reference:SL2.40ch02 gene_region:13328830-13352997 transcript_region:SL2.40ch02:13328830..13352997- go_terms:GO:0051015 functional_description:"Gelsolin (AHRD V1 **-- B0WBT0_CULQU); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0051015 NbS00002777g0004.1 protein AED:0.25 eAED:0.25 QI:26|1|1|1|0.6|0.66|6|661|299; (*GB) gi|224142229|ref|XP_002324461.1| (e_value=1e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|O65570|VILI4_ARATH (e_value=9e-114) Villin-4 OS=Arabidopsis thaliana GN=VLN4 PE=1 SV=1;; (*TAIR) AT4G30160.1 (e_value=7e-115) | Symbols: VLN4, ATVLN4 | villin 4 | chr4:14754528-14759511 FORWARD LENGTH=974;; (*ITAG) Solyc02g021420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13328830-13352997 transcript_region:SL2.40ch02:13328830..13352997- go_terms:GO:0051015 functional_description:"Gelsolin (AHRD V1 **-- B0WBT0_CULQU); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0051015 NbS00035185g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.87|0.76|0.94|0.93|1|17|676|679; (*GB) gi|48057692|gb|AAT39972.1| (e_value=0.0) Putative Sas10/Utp3 family protein, identical [Solanum demissum];; (*SWP) sp|Q9NQZ2|SAS10_HUMAN (e_value=2e-14) Something about silencing protein 10 OS=Homo sapiens GN=UTP3 PE=1 SV=1;; (*TAIR) AT2G43650.1 (e_value=1e-109) | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp) family protein | chr2:18099430-18103147 FORWARD LENGTH=654;; (*ITAG) Solyc11g072320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52600318-52611793 transcript_region:SL2.40ch11:52600318..52611793+ go_terms:GO:0005634 functional_description:"Something about silencing protein 10 (AHRD V1 *--- B3LH41_YEAS1); contains Interpro domain(s) IPR018972 Something about silencing protein 10 (Sas10), C-terminal "; GO:0005634 NbS00035185g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.85|1|0.83|0.71|7|387|347; (*GB) gi|297746215|emb|CBI16271.3| (e_value=2e-133) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9H790|EXO5_HUMAN (e_value=7e-34) Probable exonuclease V OS=Homo sapiens GN=DEM1 PE=2 SV=1;; (*TAIR) AT5G60370.1 (e_value=5e-107) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology protein 1-like, mitochondrial (InterPro:IPR019190); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24282858-24284760 FORWARD LENGTH=413;; (*ITAG) Solyc11g072400.1.1 (e_value=1e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52658674-52663835 transcript_region:SL2.40ch11:52658674..52663835+ functional_description:"Defects in morphology protein 1 homolog (AHRD V1 ***- DEM1_BOVIN); contains Interpro domain(s) IPR019190 Defects in morphology protein 1-like "; NbS00002523g0002.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|241; (*GB) gi|3036948|dbj|BAA25392.1| (e_value=3e-141) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27492|CB21_TOBAC (e_value=9e-142) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-125) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=1e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00002523g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|704; (*GB) gi|75249421|sp|Q93YF5.1|SUVH1_TOBAC (e_value=0.0) RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; AltName: Full=Histone H3-K9 methyltransferase 1; Short=H3-K9-HMTase 1; AltName: Full=NtSet1; AltName: Full=Suppressor of variegation 3-9 homolog protein 1; Short=Su(var)3-9 homolog protein 1;; (*SWP) sp|Q93YF5|SUVH1_TOBAC (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1;; (*TAIR) AT1G73100.1 (e_value=0.0) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669;; (*ITAG) Solyc10g077070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59300620-59302764 transcript_region:SL2.40ch10:59300620..59302764- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00002523g0001.1 protein AED:0.18 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-35) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00002523g0107.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|263 NbS00002523g0102.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|267 NbS00002523g0104.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|267 NbS00002523g0117.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|3|0|151 NbS00002523g0103.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|1|1|4|0|170 NbS00002523g0115.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|68 NbS00002523g0105.1 protein AED:0.44 eAED:0.69 QI:0|-1|0|1|-1|1|1|0|76 NbS00002523g0124.1 protein AED:0.67 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|64 NbS00037155g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0.28|0.37|8|90|281; (*GB) gi|255577344|ref|XP_002529552.1| (e_value=1e-123) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q96GN5|CDA7L_HUMAN (e_value=4e-11) Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2;; (*TAIR) AT4G37110.1 (e_value=1e-23) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 | chr4:17484343-17486197 REVERSE LENGTH=417;; (*ITAG) Solyc03g118480.2.1 (e_value=4e-155) genomic_reference:SL2.40ch03 gene_region:61389287-61391627 transcript_region:SL2.40ch03:61389287..61391627+ functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- A2AR40_MOUSE); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00037155g0006.1 protein AED:0.19 eAED:0.21 QI:0|1|0.75|1|1|1|4|0|287; (*GB) gi|147834515|emb|CAN72000.1| (e_value=5e-60) hypothetical protein VITISV_032712 [Vitis vinifera];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=2e-56) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=2e-57) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc03g118470.2.1 (e_value=2e-141) genomic_reference:SL2.40ch03 gene_region:61383765-61385574 transcript_region:SL2.40ch03:61383765..61385574+ go_terms:GO:0008486 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase 1 (AHRD V1 *-** C1BIE3_ONCMY); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00003453g0005.1 protein AED:0.00 eAED:0.05 QI:0|1|0.5|1|0|0|2|398|367; (*GB) gi|6862928|gb|AAF30317.1|AC018907_17 (e_value=1e-53) hypothetical protein [Arabidopsis thaliana];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=8e-55) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=6e-56) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc12g099550.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00003453g0011.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|375; (*GB) gi|297829150|ref|XP_002882457.1| (e_value=5e-39) F-box family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=1e-38) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=9e-40) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc12g099550.1.1 (e_value=2e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00003453g0001.1 protein AED:0.41 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|222424956|dbj|BAH20429.1| (e_value=2e-15) AT3G06240 [Arabidopsis thaliana];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=3e-16) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=2e-17) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc12g099550.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00003453g0106.1 protein AED:0.03 eAED:0.03 QI:76|1|1|1|0.75|0.8|5|218|489 NbS00003453g0210.1 protein AED:0.22 eAED:0.26 QI:0|0.83|0.69|1|1|1|13|0|629 NbS00053808g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|308; (*GB) gi|224117388|ref|XP_002317562.1| (e_value=6e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=6e-116) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=4e-117) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc07g064010.2.1 (e_value=1e-170) genomic_reference:SL2.40ch07 gene_region:63535612-63541449 transcript_region:SL2.40ch07:63535612..63541449- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00045861g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|255558612|ref|XP_002520331.1| (e_value=3e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G77400.1 (e_value=3e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:29085881-29086579 FORWARD LENGTH=232;; (*ITAG) Solyc03g113480.1.1 (e_value=4e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:57664364-57664939 transcript_region:SL2.40ch03:57664364..57664939- functional_description:"Unknown Protein (AHRD V1)"; NbS00045861g0008.1 protein AED:0.26 eAED:0.26 QI:38|1|0.91|1|0.54|0.75|12|0|334; (*GB) gi|225459625|ref|XP_002285874.1| (e_value=0.0) PREDICTED: replication factor C subunit 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q99J62|RFC4_MOUSE (e_value=2e-137) Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1;; (*TAIR) AT1G21690.1 (e_value=0.0) | Symbols: EMB1968, RFC4 | ATPase family associated with various cellular activities (AAA) | chr1:7615675-7618362 FORWARD LENGTH=339;; (*ITAG) Solyc11g012820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5605038-5616472 transcript_region:SL2.40ch11:5605038..5616472+ go_terms:GO:0005663,GO:0005524,GO:0017111,GO:0006260 functional_description:"Replication factor C subunit 2 (AHRD V1 ***- B6T4T0_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0005663,GO:0005524,GO:0017111,GO:0006260 NbS00041792g0006.1 protein AED:0.13 eAED:0.13 QI:144|1|1|1|0.83|0.71|7|307|394; (*GB) gi|225446643|ref|XP_002281166.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase PBS1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=4e-103) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G58690.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:21709369-21711246 FORWARD LENGTH=400;; (*ITAG) Solyc07g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60621946-60625746 transcript_region:SL2.40ch07:60621946..60625746+ go_terms:GO:0004672 functional_description:"Receptor protein kinase-like protein (AHRD V1 **** Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00009297g0010.1 protein AED:0.09 eAED:0.10 QI:0|0.42|0.25|0.87|0.14|0.37|8|0|392; (*GB) gi|359473627|ref|XP_002265303.2| (e_value=4e-98) PREDICTED: uncharacterized protein LOC100266712 [Vitis vinifera];; (*TAIR) AT5G17370.1 (e_value=3e-54) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:5721801-5724719 REVERSE LENGTH=529;; (*ITAG) Solyc01g021640.2.1 (e_value=3e-174) genomic_reference:SL2.40ch01 gene_region:32489212-32515692 transcript_region:SL2.40ch01:32489212..32515692+ functional_description:"DDB1- and CUL4-associated factor 4 (AHRD V1 **-- DCAF4_BOVIN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00056738g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|856; (*GB) gi|225460189|ref|XP_002277079.1| (e_value=0.0) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q9P2J5|SYLC_HUMAN (e_value=0.0) Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2;; (*TAIR) AT1G09620.1 (e_value=0.0) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00056738g0003.1 protein AED:0.37 eAED:0.37 QI:0|1|0.5|1|0|0.5|2|677|142; (*GB) gi|147841413|emb|CAN66687.1| (e_value=8e-59) hypothetical protein VITISV_037862 [Vitis vinifera];; (*SWP) sp|Q09996|SYLC_CAEEL (e_value=2e-12) Leucine--tRNA ligase OS=Caenorhabditis elegans GN=lrs-1 PE=2 SV=2;; (*TAIR) AT1G09620.1 (e_value=5e-53) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g069140.1.1 (e_value=3e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33670252-33673477 transcript_region:SL2.40ch02:33670252..33673477+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q0IF77_AEDAE); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00056738g0002.1 protein AED:0.43 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|147835984|emb|CAN75094.1| (e_value=2e-87) hypothetical protein VITISV_024181 [Vitis vinifera];; (*SWP) sp|Q9P2J5|SYLC_HUMAN (e_value=1e-23) Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2;; (*TAIR) AT1G09620.1 (e_value=3e-71) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g069140.1.1 (e_value=3e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33670252-33673477 transcript_region:SL2.40ch02:33670252..33673477+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q0IF77_AEDAE); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00008326g0013.1 protein AED:0.04 eAED:0.05 QI:255|0.9|0.81|1|1|1|11|314|802; (*GB) gi|147820976|emb|CAN74602.1| (e_value=7e-126) hypothetical protein VITISV_028112 [Vitis vinifera];; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=1e-47) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=1e-48) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc08g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62753443-62757209 transcript_region:SL2.40ch08:62753443..62757209+ functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *-*- Y1462_ARATH)"; NbS00008326g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.33|1|0.2|0.16|6|0|443; (*GB) gi|224058044|ref|XP_002299439.1| (e_value=7e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|O23086|ALMTA_ARATH (e_value=5e-136) Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana GN=ALMT10 PE=2 SV=2;; (*TAIR) AT4G00910.1 (e_value=4e-137) | Symbols: | Aluminium activated malate transporter family protein | chr4:389370-391287 REVERSE LENGTH=497;; (*ITAG) Solyc08g082950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62759293-62761446 transcript_region:SL2.40ch08:62759293..62761446+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00008326g0020.1 protein AED:0.14 eAED:0.14 QI:172|1|1|1|0.5|0.8|5|311|409; (*GB) gi|255555705|ref|XP_002518888.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q2TBW5|ZNHI2_BOVIN (e_value=3e-30) Zinc finger HIT domain-containing protein 2 OS=Bos taurus GN=ZNHIT2 PE=2 SV=1;; (*TAIR) AT5G63830.1 (e_value=3e-147) | Symbols: | HIT-type Zinc finger family protein | chr5:25543585-25544802 REVERSE LENGTH=405;; (*ITAG) Solyc08g082960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62762872-62766598 transcript_region:SL2.40ch08:62762872..62766598+ functional_description:"Zinc finger HIT domain containing 2 (Predicted) (AHRD V1 ***- B5DEI7_RAT); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; NbS00008326g0017.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|1|0|0|3|0|322; (*GB) gi|224072260|ref|XP_002303678.1| (e_value=7e-63) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q43385|DOF37_ARATH (e_value=5e-35) Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2;; (*TAIR) AT3G61850.4 (e_value=6e-39) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=324;; (*ITAG) Solyc08g082910.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62732664-62734361 transcript_region:SL2.40ch08:62732664..62734361+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 ***- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00008326g0016.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|4|338|463; (*GB) gi|58200405|gb|AAW66458.1| (e_value=0.0) Fas-associated factor 1-like protein [Capsicum annuum];; (*SWP) sp|Q6GQ69|FAF2B_XENLA (e_value=1e-48) FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=0.0) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc08g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62766921-62770902 transcript_region:SL2.40ch08:62766921..62770902+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 **-- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbS00008326g0022.1 protein AED:0.36 eAED:0.37 QI:226|0.5|0.66|1|0|0|3|0|104; (*GB) gi|388498352|gb|AFK37242.1| (e_value=2e-52) unknown [Medicago truncatula];; (*TAIR) AT5G42000.1 (e_value=3e-52) | Symbols: | ORMDL family protein | chr5:16799455-16800681 FORWARD LENGTH=154;; (*ITAG) Solyc08g082920.2.1 (e_value=2e-62) genomic_reference:SL2.40ch08 gene_region:62736967-62742549 transcript_region:SL2.40ch08:62736967..62742549- go_terms:GO:0042802 functional_description:"ORM1-like protein 2 (AHRD V1 ***- B4FEN2_MAIZE); contains Interpro domain(s) IPR007203 ORMDL "; GO:0042802 NbS00019691g0006.1 protein AED:0.27 eAED:0.35 QI:0|0.42|0.37|1|0.28|0.5|8|446|356; (*GB) gi|297737705|emb|CBI26906.3| (e_value=7e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55681|RECG_SYNY3 (e_value=3e-58) ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1;; (*TAIR) AT2G01440.1 (e_value=5e-128) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr2:193950-199056 REVERSE LENGTH=973;; (*ITAG) Solyc05g008040.2.1 (e_value=8e-163) genomic_reference:SL2.40ch05 gene_region:2454868-2465497 transcript_region:SL2.40ch05:2454868..2465497+ go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase RECG-like (AHRD V1 **** Q6ZFX9_ORYSJ); contains Interpro domain(s) IPR004609 DNA helicase, ATP-dependent, RecG "; GO:0004003 NbS00019691g0009.1 protein AED:0.74 eAED:0.74 QI:0|0.25|0|0.4|0.75|0.8|5|0|84 NbS00039842g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.8|0.63|1|1|1|11|0|1298; (*GB) gi|4204793|gb|AAD10836.1| (e_value=0.0) P-glycoprotein [Solanum tuberosum];; (*SWP) sp|Q9ZR72|AB1B_ARATH (e_value=0.0) ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1;; (*TAIR) AT2G36910.1 (e_value=0.0) | Symbols: ATPGP1, PGP1, ABCB1 | ATP binding cassette subfamily B1 | chr2:15502162-15507050 FORWARD LENGTH=1286;; (*ITAG) Solyc09g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1690129-1697213 transcript_region:SL2.40ch09:1690129..1697213- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00008955g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.25|4|0|136; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00008955g0003.1 protein AED:0.43 eAED:0.44 QI:1|0|0|1|0|0.5|2|0|78 NbS00008955g0004.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|0|0|2|0|59 NbS00008955g0106.1 protein AED:0.18 eAED:0.18 QI:299|1|0.5|1|1|1|2|0|458 NbS00000335g0006.1 protein AED:0.14 eAED:0.18 QI:132|1|0.5|1|1|1|2|0|379; (*GB) gi|225459071|ref|XP_002283770.1| (e_value=9e-46) PREDICTED: uncharacterized protein LOC100243767 [Vitis vinifera];; (*TAIR) AT4G24500.2 (e_value=1e-11) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:12658732-12660211 FORWARD LENGTH=290;; (*ITAG) Solyc12g087990.1.1 (e_value=2e-96) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:61927966-61930100 transcript_region:SL2.40ch12:61927966..61930100- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7M8T6_ARALY)"; NbS00053216g0002.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0|0.5|2|0|166; (*GB) gi|57013880|ref|YP_173354.1| (e_value=2e-108) maturase-related protein [Nicotiana tabacum];; (*SWP) sp|P0A3U1|LTRA_LACLM (e_value=5e-20) Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1;; (*ITAG) ATMG00520.1 (e_value=4e-98) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=1e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00056966g0004.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|3|0|396; (*GB) gi|359483750|ref|XP_002269533.2| (e_value=4e-134) PREDICTED: pentatricopeptide repeat-containing protein At4g20770-like [Vitis vinifera];; (*SWP) sp|Q9SVH0|PP329_ARATH (e_value=2e-95) Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2;; (*TAIR) AT4G20770.1 (e_value=1e-96) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11130762-11133086 REVERSE LENGTH=774;; (*ITAG) Solyc06g084580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45940907-45943204 transcript_region:SL2.40ch06:45940907..45943204- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00056966g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|175; (*GB) gi|297740913|emb|CBI31095.3| (e_value=1e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SVH0|PP329_ARATH (e_value=8e-71) Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2;; (*TAIR) AT4G20770.1 (e_value=6e-72) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11130762-11133086 REVERSE LENGTH=774;; (*ITAG) Solyc06g084580.1.1 (e_value=4e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45940907-45943204 transcript_region:SL2.40ch06:45940907..45943204- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00009749g0006.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*TAIR) AT1G75620.1 (e_value=9e-163) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00009749g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|357966935|gb|AET97563.1| (e_value=5e-75) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=5e-13) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G75620.1 (e_value=7e-66) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081130.1.1 (e_value=4e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00009749g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|1014|259; (*GB) gi|357966935|gb|AET97563.1| (e_value=1e-108) galactose oxidase [Ziziphus jujuba];; (*TAIR) AT1G75620.1 (e_value=3e-99) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081140.1.1 (e_value=7e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62764221-62765882 transcript_region:SL2.40ch04:62764221..62765882+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00009749g0017.1 protein AED:0.33 eAED:0.39 QI:710|0|0.33|1|0|0|3|0|99 NbS00009749g0016.1 protein AED:0.14 eAED:0.40 QI:0|0|0|1|0|0|4|0|195; (*ITAG) Solyc01g017760.1.1 (e_value=7e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022716g0006.1 protein AED:0.16 eAED:0.16 QI:152|0.66|0.7|1|0.66|0.8|10|173|563; (*GB) gi|350539537|ref|NP_001234176.1| (e_value=0.0) PI-phospholipase C PLC5 [Solanum lycopersicum];; (*SWP) sp|Q8GV43|PLCD6_ARATH (e_value=0.0) Phosphoinositide phospholipase C 6 OS=Arabidopsis thaliana GN=PLC6 PE=2 SV=2;; (*TAIR) AT2G40116.1 (e_value=0.0) | Symbols: | Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613;; (*ITAG) Solyc06g051630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31667391-31670677 transcript_region:SL2.40ch06:31667391..31670677- go_terms:GO:0023034,GO:0006629,GO:0005509 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0005509 NbS00009711g0009.1 protein AED:0.02 eAED:0.02 QI:170|1|1|1|0.71|0.75|8|2455|1338; (*GB) gi|359495006|ref|XP_002266009.2| (e_value=0.0) PREDICTED: F-box protein At3g54460-like [Vitis vinifera];; (*SWP) sp|Q9M1I1|FB304_ARATH (e_value=0.0) F-box protein At3g54460 OS=Arabidopsis thaliana GN=At3g54460 PE=2 SV=1;; (*TAIR) AT3G54460.1 (e_value=0.0) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein | chr3:20162050-20167186 REVERSE LENGTH=1378;; (*ITAG) Solyc11g005250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:202911-212246 transcript_region:SL2.40ch11:202911..212246- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- C5FVY4_NANOT); contains Interpro domain(s) IPR011124 Zinc finger, CW-type "; GO:0005524,GO:0008270 NbS00034922g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|0.85|1|0.5|0.71|7|628|576; (*GB) gi|225452954|ref|XP_002284273.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 13-like [Vitis vinifera];; (*SWP) sp|Q0WV13|GAUTD_ARATH (e_value=0.0) Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1;; (*TAIR) AT3G01040.1 (e_value=0.0) | Symbols: GAUT13 | galacturonosyltransferase 13 | chr3:9392-11979 FORWARD LENGTH=533;; (*ITAG) Solyc03g013630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6576713-6582582 transcript_region:SL2.40ch03:6576713..6582582+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00034922g0015.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|0.5|0.66|3|0|297; (*GB) gi|170243|gb|AAA34078.1| (e_value=1e-146) beta(1,3)-glucanase regulator [Nicotiana plumbaginifolia];; (*SWP) sp|P07979|GUB_NICPL (e_value=7e-146) Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3;; (*TAIR) AT4G16260.1 (e_value=2e-107) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g060020.2.1 (e_value=3e-117) genomic_reference:SL2.40ch01 gene_region:62224181-62226272 transcript_region:SL2.40ch01:62224181..62226272- go_terms:GO:0005975 functional_description:"Beta-glucanase (AHRD V1 ***- Q53X08_NICPL); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00026697g0003.1 protein AED:0.24 eAED:0.24 QI:119|0.71|0.87|1|0.42|0.37|8|274|387; (*GB) gi|357521181|ref|XP_003630879.1| (e_value=5e-141) hypothetical protein MTR_8g104490 [Medicago truncatula];; (*TAIR) AT1G73805.1 (e_value=3e-101) | Symbols: | Calmodulin binding protein-like | chr1:27745761-27749178 REVERSE LENGTH=451;; (*ITAG) Solyc12g036390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30933296-30936090 transcript_region:SL2.40ch12:30933296..30936090- functional_description:"Calmodulin-binding protein-like (AHRD V1 ***- Q943R3_ORYSJ); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; NbS00041053g0003.1 protein AED:0.21 eAED:0.21 QI:665|0.71|0.75|1|0.28|0.37|8|0|625; (*GB) gi|255549052|ref|XP_002515582.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=4e-59) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT3G24440.1 (e_value=3e-156) | Symbols: VRN5, VIL1 | Fibronectin type III domain-containing protein | chr3:8876207-8878171 REVERSE LENGTH=602;; (*ITAG) Solyc05g018390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20695575-20700500 transcript_region:SL2.40ch05:20695575..20700500+ functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC); contains Interpro domain(s) IPR003961 Fibronectin, type III "; NbS00017768g0005.1 protein AED:0.03 eAED:0.04 QI:0|0|0.5|1|0|0|2|698|175; (*GB) gi|365818535|gb|AEX00356.1| (e_value=2e-24) IAA13 [Solanum lycopersicum];; (*ITAG) Solyc09g090910.1.1 (e_value=8e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65662705-65665621 transcript_region:SL2.40ch09:65662705..65665621- go_terms:GO:0005515,GO:0016564 functional_description:"Auxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0016564 NbS00032558g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|423; (*GB) gi|255553609|ref|XP_002517845.1| (e_value=4e-164) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-125) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G03840.2 (e_value=7e-127) | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=504;; (*ITAG) Solyc07g053570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59307855-59310428 transcript_region:SL2.40ch07:59307855..59310428- go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MN23_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00032558g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0.5|1|0|1|2|318|224; (*GB) gi|225446467|ref|XP_002277665.1| (e_value=8e-119) PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera];; (*SWP) sp|Q9H867|MT21D_HUMAN (e_value=1e-23) Methyltransferase-like protein 21D OS=Homo sapiens GN=METTL21D PE=2 SV=2;; (*TAIR) AT5G44170.1 (e_value=7e-114) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:17780394-17781098 FORWARD LENGTH=234;; (*ITAG) Solyc07g053580.1.1 (e_value=3e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59328975-59329649 transcript_region:SL2.40ch07:59328975..59329649+ go_terms:GO:0008757 functional_description:"FAM119A (AHRD V1 **-- B9EP45_SALSA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; GO:0008757 NbS00024127g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|382; (*GB) gi|225434879|ref|XP_002283212.1| (e_value=2e-114) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=1e-36) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT3G46620.1 (e_value=3e-85) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17178837-17180024 REVERSE LENGTH=395;; (*ITAG) Solyc04g011610.1.1 (e_value=7e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00024127g0005.1 protein AED:0.44 eAED:0.45 QI:0|0|0|1|1|1|2|0|163 NbS00038813g0004.1 protein AED:0.03 eAED:0.04 QI:0|1|0|1|1|1|2|0|474; (*GB) gi|225427550|ref|XP_002266461.1| (e_value=5e-134) PREDICTED: probable aspartic protease At2g35615 [Vitis vinifera];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=1e-118) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=3e-121) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc08g005830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:639362-640702 transcript_region:SL2.40ch08:639362..640702+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00007883g0003.1 protein AED:0.31 eAED:0.35 QI:0|0.5|0.28|1|0.33|0.42|7|0|260; (*GB) gi|1946300|emb|CAA73132.1| (e_value=1e-34) hypothetical protein [Silene latifolia];; (*SWP) sp|Q5ZLN0|LRC40_CHICK (e_value=2e-14) Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1;; (*TAIR) AT3G15410.1 (e_value=9e-35) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:5203380-5207279 FORWARD LENGTH=584;; (*ITAG) Solyc10g006930.2.1 (e_value=3e-52) genomic_reference:SL2.40ch10 gene_region:1360016-1371881 transcript_region:SL2.40ch10:1360016..1371881- go_terms:GO:0008022,GO:0019903 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0008022,GO:0019903 NbS00025208g0004.1 protein AED:0.21 eAED:0.22 QI:25|0.88|0.72|1|0.76|0.77|18|326|1613; (*GB) gi|359481367|ref|XP_002273203.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL4-like [Vitis vinifera];; (*SWP) sp|Q9LYZ7|UPL4_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1 SV=1;; (*TAIR) AT5G02880.1 (e_value=0.0) | Symbols: UPL4 | ubiquitin-protein ligase 4 | chr5:662643-668847 FORWARD LENGTH=1502;; (*ITAG) Solyc09g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:907686-916971 transcript_region:SL2.40ch09:907686..916971+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 **** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00023331g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|473; (*GB) gi|123620|sp|P27322.1|HSP72_SOLLC (e_value=0.0) RecName: Full=Heat shock cognate 70 kDa protein 2;; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc10g086410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:64561395-64564764 transcript_region:SL2.40ch10:64561395..64564764+ go_terms:GO:0051082 functional_description:"Heat shock protein 70-3 (AHRD V1 ***- Q67BD0_TOBAC); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbS00003184g0005.1 protein AED:0.15 eAED:0.15 QI:281|0|0.33|1|0|0.66|3|0|268; (*GB) gi|225458101|ref|XP_002280716.1| (e_value=3e-37) PREDICTED: probable salt tolerance-like protein At1g75540 [Vitis vinifera];; (*ITAG) Solyc12g089240.1.1 (e_value=4e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62792418-62794690 transcript_region:SL2.40ch12:62792418..62794690+ go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 3 (AHRD V1 *--- COL3_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00030760g0002.1 protein AED:0.22 eAED:0.22 QI:317|0.33|0.25|0.75|1|1|4|0|161; (*GB) gi|359495759|ref|XP_003635083.1| (e_value=5e-30) PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera];; (*SWP) sp|P0CB17|CSPLH_ARATH (e_value=1e-21) CASP-like protein At3g50810 OS=Arabidopsis thaliana GN=At3g50810 PE=2 SV=1;; (*TAIR) AT3G50810.1 (e_value=8e-23) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:18889002-18889868 REVERSE LENGTH=154;; (*ITAG) Solyc02g065420.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:31159294-31162507 transcript_region:SL2.40ch02:31159294..31162507+ functional_description:"UPF0497 membrane protein At3g50810 (AHRD V1 ***- U497K_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00016434g0102.1 protein AED:0.20 eAED:0.21 QI:29|0.5|0.33|1|0.5|0|3|0|175 NbS00023874g0006.1 protein AED:0.33 eAED:0.33 QI:206|1|1|1|1|1|2|139|151; (*GB) gi|400992|sp|P30956.1|RK28_TOBAC (e_value=4e-93) RecName: Full=50S ribosomal protein L28, chloroplastic; AltName: Full=CL28; Flags: Precursor;; (*SWP) sp|P30956|RK28_TOBAC (e_value=1e-94) 50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1;; (*TAIR) AT2G33450.1 (e_value=6e-58) | Symbols: | Ribosomal L28 family | chr2:14173620-14174380 FORWARD LENGTH=143;; (*ITAG) Solyc09g090410.2.1 (e_value=9e-83) genomic_reference:SL2.40ch09 gene_region:65281878-65286083 transcript_region:SL2.40ch09:65281878..65286083- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 ***- B6TFW5_MAIZE); contains Interpro domain(s) IPR001383 Ribosomal protein L28 "; GO:0005840 NbS00023874g0009.1 protein AED:0.06 eAED:0.06 QI:202|0.9|0.81|1|0.8|0.63|11|312|436; (*GB) gi|224053287|ref|XP_002297747.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54EY2|EI2BB_DICDI (e_value=1e-68) Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1;; (*TAIR) AT3G07300.2 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr3:2324967-2327380 REVERSE LENGTH=407;; (*ITAG) Solyc09g090400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65275871-65281582 transcript_region:SL2.40ch09:65275871..65281582+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2B (AHRD V1 **** Q2UBN6_ASPOR); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0003743 NbS00043683g0004.1 protein AED:0.66 eAED:0.79 QI:0|0.33|0.25|1|0.33|0.25|4|0|151; (*GB) gi|356527805|ref|XP_003532497.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100818305 [Glycine max];; (*TAIR) AT1G49040.1 (e_value=2e-29) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18139419-18148826 REVERSE LENGTH=1187;; (*ITAG) Solyc03g119650.2.1 (e_value=6e-41) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbC25693253g0003.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.5|0|0|2|0|283; (*ITAG) Solyc10g005970.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:748135-749331 transcript_region:SL2.40ch10:748135..749331- functional_description:"Unknown Protein (AHRD V1)"; NbS00010727g0001.1 protein AED:0.06 eAED:0.06 QI:1136|0.87|1|1|0.75|0.66|9|345|265; (*GB) gi|359482283|ref|XP_002264701.2| (e_value=7e-149) PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Vitis vinifera];; (*SWP) sp|Q10RI7|RH38_ORYSJ (e_value=1e-117) DEAD-box ATP-dependent RNA helicase 38 OS=Oryza sativa subsp. japonica GN=Os03g0158200 PE=3 SV=1;; (*TAIR) AT3G53110.1 (e_value=4e-113) | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496;; (*ITAG) Solyc10g085790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64195607-64200611 transcript_region:SL2.40ch10:64195607..64200611+ go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00010727g0010.1 protein AED:0.11 eAED:0.14 QI:0|1|0.5|1|1|1|2|324|288; (*GB) gi|255577489|ref|XP_002529623.1| (e_value=3e-71) Remorin, putative [Ricinus communis];; (*TAIR) AT2G41870.1 (e_value=5e-54) | Symbols: | Remorin family protein | chr2:17471119-17472519 REVERSE LENGTH=274;; (*ITAG) Solyc04g015520.2.1 (e_value=1e-61) genomic_reference:SL2.40ch04 gene_region:5728590-5731134 transcript_region:SL2.40ch04:5728590..5731134+ go_terms:GO:0003677 functional_description:"DNA binding protein (AHRD V1 **** B6TND2_MAIZE); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbC24665136g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|350539035|ref|NP_001233859.1| (e_value=5e-109) aromatic amino acid decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=7e-68) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=2e-69) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g006750.2.1 (e_value=3e-113) genomic_reference:SL2.40ch08 gene_region:1322952-1326746 transcript_region:SL2.40ch08:1322952..1326746+ go_terms:GO:0030170,GO:0019752 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0030170,GO:0019752 NbS00043708g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.33|1|0.8|0.66|6|0|628; (*GB) gi|296088774|emb|CBI38224.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=8e-149) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT5G64330.1 (e_value=6e-150) | Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746;; (*ITAG) Solyc01g105680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85527440-85530485 transcript_region:SL2.40ch01:85527440..85530485+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00043708g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|0|0.33|3|0|59; (*GB) gi|297817686|ref|XP_002876726.1| (e_value=3e-15) hypothetical protein ARALYDRAFT_486864 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G63510.2 (e_value=6e-17) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr3:23450615-23452682 FORWARD LENGTH=386;; (*ITAG) Solyc01g087300.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:73990288-74001310 transcript_region:SL2.40ch01:73990288..74001310- go_terms:GO:0008152,GO:0055114 functional_description:"tRNA-dihydrouridine synthase (AHRD V1 ***- D0HBH3_VIBMI); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0008152,GO:0055114 NbS00006012g0015.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0.5|0.33|3|136|275; (*GB) gi|297739721|emb|CBI29903.3| (e_value=1e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42260.1 (e_value=5e-49) | Symbols: UVI4, PYM | uv-b-insensitive 4 | chr2:17602240-17603283 REVERSE LENGTH=259;; (*ITAG) Solyc10g080400.1.1 (e_value=6e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61005071-61007492 transcript_region:SL2.40ch10:61005071..61007492+ functional_description:"Polychome UV-B-insensitive 4 (AHRD V1 ***- D7LI35_ARALY)"; NbS00006012g0021.1 protein AED:0.07 eAED:0.08 QI:0|0.9|0.72|1|0.9|0.90|11|0|499; (*GB) gi|62822992|gb|AAY15214.1| (e_value=0.0) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=3e-106) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT5G06839.3 (e_value=9e-173) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g080410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61008679-61015000 transcript_region:SL2.40ch10:61008679..61015000- go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00006012g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=4e-56) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=1e-43) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=7e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbS00006012g0005.1 protein AED:0.26 eAED:0.26 QI:376|0.77|0.9|1|0.55|0.6|10|0|384; (*GB) gi|147843683|emb|CAN81991.1| (e_value=6e-49) hypothetical protein VITISV_040411 [Vitis vinifera];; (*SWP) sp|Q9LT35|NEK6_ARATH (e_value=4e-32) Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana GN=NEK6 PE=2 SV=1;; (*TAIR) AT3G20860.1 (e_value=3e-33) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc10g080390.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60983479-60987049 transcript_region:SL2.40ch10:60983479..60987049- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D8LPU9_ECTSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006012g0019.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0|2|0|86; (*GB) gi|297739704|emb|CBI29886.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YY75|NEK6_ORYSJ (e_value=4e-15) Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=2 SV=2;; (*TAIR) AT3G20860.1 (e_value=2e-15) | Symbols: ATNEK5, NEK5 | NIMA-related kinase 5 | chr3:7306147-7308434 FORWARD LENGTH=427;; (*ITAG) Solyc10g080390.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60983479-60987049 transcript_region:SL2.40ch10:60983479..60987049- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D8LPU9_ECTSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014403g0006.1 protein AED:0.32 eAED:0.37 QI:0|0.5|0.2|1|0.75|0.6|5|0|229; (*GB) gi|225427812|ref|XP_002275472.1| (e_value=3e-80) PREDICTED: protein AF-9 homolog [Vitis vinifera];; (*SWP) sp|Q755P0|AF9_ASHGO (e_value=4e-28) Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1;; (*TAIR) AT5G45600.1 (e_value=1e-76) | Symbols: GAS41, TAF14B | YEATS family protein | chr5:18488059-18489666 FORWARD LENGTH=268;; (*ITAG) Solyc04g077290.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59848664-59849488 transcript_region:SL2.40ch04:59848664..59849488- go_terms:GO:0005515,GO:0004402 functional_description:"YEATS domain-containing protein (AHRD V1 **-- C1EEG0_9CHLO); contains Interpro domain(s) IPR005033 YEATS "; GO:0005515,GO:0004402 NbS00013954g0001.1 protein AED:0.09 eAED:0.09 QI:853|0.5|0.8|1|0|0.4|5|935|388; (*GB) gi|225440783|ref|XP_002275884.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=1e-153) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=9e-155) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00016857g0020.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|253; (*GB) gi|15209175|gb|AAK91893.1|AC091627_6 (e_value=9e-97) Hsp20/alpha crystallin family protein [Solanum demissum];; (*TAIR) AT5G20970.1 (e_value=4e-22) | Symbols: | HSP20-like chaperones superfamily protein | chr5:7123132-7124001 FORWARD LENGTH=249;; (*ITAG) Solyc11g071560.1.1 (e_value=6e-103) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52067705-52069143 transcript_region:SL2.40ch11:52067705..52069143- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K216_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00016857g0026.1 protein AED:0.09 eAED:0.09 QI:0|0.92|0.85|1|0.76|0.71|14|912|1410; (*GB) gi|359473896|ref|XP_002271694.2| (e_value=0.0) PREDICTED: ABC transporter C family member 10-like [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc03g007530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2104948-2110984 transcript_region:SL2.40ch03:2104948..2110984+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00016857g0005.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|77403673|dbj|BAE46415.1| (e_value=6e-149) short chain dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q08632|SDR1_PICAB (e_value=6e-89) Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1;; (*TAIR) AT3G03980.1 (e_value=8e-113) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:1031786-1033081 FORWARD LENGTH=270;; (*ITAG) Solyc06g071060.1.1 (e_value=3e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40049808-40050596 transcript_region:SL2.40ch06:40049808..40050596+ go_terms:GO:0043621 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7L204_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621 NbS00016857g0006.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|77403673|dbj|BAE46415.1| (e_value=2e-55) short chain dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q08632|SDR1_PICAB (e_value=1e-39) Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1;; (*TAIR) AT3G03980.1 (e_value=6e-49) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:1031786-1033081 FORWARD LENGTH=270;; (*ITAG) Solyc06g071070.1.1 (e_value=5e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40053211-40053996 transcript_region:SL2.40ch06:40053211..40053996+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7L204_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00016857g0019.1 protein AED:0.34 eAED:0.70 QI:0|0|0|0.66|1|1|3|0|116; (*GB) gi|115477326|ref|NP_001062259.1| (e_value=2e-23) Os08g0519400 [Oryza sativa Japonica Group];; (*TAIR) AT4G31340.1 (e_value=3e-20) | Symbols: | myosin heavy chain-related | chr4:15205662-15208950 FORWARD LENGTH=437;; (*ITAG) Solyc07g008970.2.1 (e_value=2e-49) genomic_reference:SL2.40ch07 gene_region:3992722-3999921 transcript_region:SL2.40ch07:3992722..3999921- functional_description:"Unknown Protein (AHRD V1)"; NbS00016857g0033.1 protein AED:0.17 eAED:0.17 QI:0|0.4|0|1|1|1|6|0|505; (*GB) gi|15209172|gb|AAK91890.1|AC091627_3 (e_value=0.0) Amidase family protein [Solanum demissum];; (*SWP) sp|Q9URY4|YI01_SCHPO (e_value=2e-56) Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=2 SV=1;; (*TAIR) AT4G34880.1 (e_value=3e-144) | Symbols: | Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466;; (*ITAG) Solyc11g071550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52063772-52067017 transcript_region:SL2.40ch11:52063772..52067017+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- Q81EC8_BACCR); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00016857g0032.1 protein AED:0.23 eAED:0.23 QI:196|0.57|0.37|1|0.57|0.62|8|0|940; (*GB) gi|114053444|gb|AAK91898.2|AC091627_11 (e_value=0.0) tubulin family protein, related [Solanum demissum];; (*TAIR) AT3G43610.1 (e_value=1e-99) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr3:15517772-15523927 REVERSE LENGTH=1207;; (*ITAG) Solyc11g071570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52073568-52089050 transcript_region:SL2.40ch11:52073568..52089050+ go_terms:GO:0005815 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 *-*- Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0005815 NbS00016857g0030.1 protein AED:0.28 eAED:0.28 QI:80|0.5|0.33|0.66|0.5|0.66|3|0|93; (*GB) gi|296082626|emb|CBI21631.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G43610.1 (e_value=2e-21) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr3:15517772-15523927 REVERSE LENGTH=1207;; (*ITAG) Solyc11g071570.1.1 (e_value=1e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52073568-52089050 transcript_region:SL2.40ch11:52073568..52089050+ go_terms:GO:0005815 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 *-*- Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0005815 NbS00016857g0031.1 protein AED:0.44 eAED:0.45 QI:0|1|0.6|1|0.5|0.6|5|0|231; (*GB) gi|296082626|emb|CBI21631.3| (e_value=5e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96RT7|GCP6_HUMAN (e_value=1e-18) Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3;; (*TAIR) AT3G43610.1 (e_value=3e-76) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr3:15517772-15523927 REVERSE LENGTH=1207;; (*ITAG) Solyc11g071570.1.1 (e_value=7e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52073568-52089050 transcript_region:SL2.40ch11:52073568..52089050+ go_terms:GO:0005815 functional_description:"Gamma-tubulin complex component 5-like (AHRD V1 *-*- Q6H548_ORYSJ); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0005815 NbS00033584g0001.1 protein AED:0.01 eAED:0.01 QI:33|0.75|0.8|1|0.75|0.6|5|33|801; (*GB) gi|88193697|dbj|BAE79735.1| (e_value=0.0) phospholipase D alpha 2 [Arachis hypogaea];; (*SWP) sp|O04865|PLDA1_VIGUN (e_value=0.0) Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1;; (*TAIR) AT3G15730.1 (e_value=0.0) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc12g011170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4013435-4018305 transcript_region:SL2.40ch12:4013435..4018305+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00018314g0005.1 protein AED:0.30 eAED:0.30 QI:134|0.71|0.62|1|1|1|8|115|270; (*GB) gi|255542546|ref|XP_002512336.1| (e_value=3e-93) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G27390.1 (e_value=6e-85) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr5:9674634-9676118 REVERSE LENGTH=241;; (*ITAG) Solyc08g043180.2.1 (e_value=8e-102) genomic_reference:SL2.40ch08 gene_region:30094083-30099554 transcript_region:SL2.40ch08:30094083..30099554- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016124 Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich "; NbS00024463g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.6|1|0.5|0.6|5|0|947; (*GB) gi|47824937|gb|AAT38712.1| (e_value=2e-136) hypothetical protein SDM1_34t00007 [Solanum demissum];; (*SWP) sp|B3QWX6|KHSE_CHLT3 (e_value=1e-32) Homoserine kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=2e-107) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc05g007570.2.1 (e_value=4e-154) genomic_reference:SL2.40ch05 gene_region:2106441-2110793 transcript_region:SL2.40ch05:2106441..2110793- go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00002931g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.2|0.9|0.66|0.6|10|0|773; (*GB) gi|297744767|emb|CBI38029.3| (e_value=2e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65685|BLH6_ARATH (e_value=2e-99) BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana GN=BLH6 PE=2 SV=1;; (*TAIR) AT4G34610.2 (e_value=1e-100) | Symbols: BLH6 | BEL1-like homeodomain 6 | chr4:16530546-16532498 REVERSE LENGTH=532;; (*ITAG) Solyc04g080790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62464436-62467801 transcript_region:SL2.40ch04:62464436..62467801- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 3 (AHRD V1 *--- BLH3_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00000304g0001.1 protein AED:0.13 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|224073422|ref|XP_002304093.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPB4|PSKR1_DAUCA (e_value=2e-19) Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1;; (*TAIR) AT1G74180.1 (e_value=6e-36) | Symbols: AtRLP14, RLP14 | receptor like protein 14 | chr1:27897197-27900908 REVERSE LENGTH=976;; (*ITAG) Solyc11g011180.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4245081-4248862 transcript_region:SL2.40ch11:4245081..4248862- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00039050g0020.1 protein AED:0.16 eAED:0.16 QI:203|1|1|1|1|1|4|282|362; (*GB) gi|350537551|ref|NP_001234554.1| (e_value=0.0) UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Solanum lycopersicum];; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2;; (*TAIR) AT3G02230.1 (e_value=0.0) | Symbols: RGP1, ATRGP1 | reversibly glycosylated polypeptide 1 | chr3:415463-417304 FORWARD LENGTH=357;; (*ITAG) Solyc05g012070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5295089-5298245 transcript_region:SL2.40ch05:5295089..5298245- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00039050g0003.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.71|1|0.83|0.85|7|166|211; (*GB) gi|224116686|ref|XP_002317366.1| (e_value=7e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54WR5|CCD94_DICDI (e_value=8e-73) Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1;; (*TAIR) AT1G17130.1 (e_value=1e-125) | Symbols: | Family of unknown function (DUF572) | chr1:5854264-5856472 FORWARD LENGTH=331;; (*ITAG) Solyc08g074420.2.1 (e_value=6e-139) genomic_reference:SL2.40ch08 gene_region:55706856-55712251 transcript_region:SL2.40ch08:55706856..55712251+ functional_description:"Coiled-coil domain-containing protein 130 (AHRD V1 *--- CC130_BOVIN); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; NbS00039050g0014.1 protein AED:0.61 eAED:0.69 QI:0|0|0.5|1|0|0|2|34|63 NbS00039050g0021.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.37|0.87|0.73|0.75|16|0|1175; (*GB) gi|297738114|emb|CBI27315.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G26330.2 (e_value=2e-75) | Symbols: | DNA binding | chr1:9107625-9113520 FORWARD LENGTH=1194;; (*ITAG) Solyc05g012060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5283244-5294282 transcript_region:SL2.40ch05:5283244..5294282+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0005634 NbS00017612g0013.1 protein AED:0.24 eAED:0.28 QI:0|0|0.5|1|0|0|2|901|68 NbS00017612g0010.1 protein AED:0.29 eAED:0.29 QI:12|0.25|0.2|0.8|0.5|0.4|5|245|505; (*GB) gi|359480183|ref|XP_002278072.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258835 [Vitis vinifera];; (*TAIR) AT3G62330.1 (e_value=4e-126) | Symbols: | Zinc knuckle (CCHC-type) family protein | chr3:23063329-23065419 REVERSE LENGTH=479;; (*ITAG) Solyc08g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59546613-59549799 transcript_region:SL2.40ch08:59546613..59549799- go_terms:GO:0008270 functional_description:"Zinc knuckle (CCHC-type) family protein (AHRD V1 ***- D7LSW2_ARALY); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00017612g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.76|0.57|1|0.69|0.64|14|0|1575; (*GB) gi|224138596|ref|XP_002326642.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91XT4|SC16B_MOUSE (e_value=1e-30) Protein transport protein Sec16B OS=Mus musculus GN=Sec16b PE=1 SV=3;; (*TAIR) AT5G47490.1 (e_value=0.0) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1909110-1917569 transcript_region:SL2.40ch08:1909110..1917569+ go_terms:GO:0032259 functional_description:"COPII coat assembly protein sec16 (AHRD V1 *-*- B2W276_PYRTR)"; GO:0032259 NbS00034390g0004.1 protein AED:0.03 eAED:0.01 QI:0|1|0.5|1|1|1|6|0|269; (*GB) gi|147863127|emb|CAN78775.1| (e_value=4e-12) hypothetical protein VITISV_029749 [Vitis vinifera];; (*ITAG) Solyc11g017040.1.1 (e_value=2e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7820295-7844282 transcript_region:SL2.40ch11:7820295..7844282+ go_terms:GO:0006508 functional_description:"Sentrin specific protease 1b (AHRD V1 *-*- D0G0B1_XENLA); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00030048g0006.1 protein AED:0.01 eAED:0.05 QI:0|0.66|0|1|0.33|0.25|4|0|605; (*GB) gi|225426116|ref|XP_002272534.1| (e_value=4e-144) PREDICTED: endoglucanase/exoglucanase B [Vitis vinifera];; (*SWP) sp|P23548|GUN_PAEPO (e_value=3e-15) Endoglucanase OS=Paenibacillus polymyxa PE=3 SV=2;; (*TAIR) AT3G26140.1 (e_value=3e-112) | Symbols: | Cellulase (glycosyl hydrolase family 5) protein | chr3:9559742-9563070 REVERSE LENGTH=508;; (*ITAG) Solyc08g081720.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61867512-61869759 transcript_region:SL2.40ch08:61867512..61869759- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 5 (AHRD V1 **-- C7Q2F2_CATAD); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00034129g0003.1 protein AED:0.11 eAED:0.11 QI:86|1|1|1|1|1|6|42|296; (*GB) gi|257831431|gb|ACV71016.1| (e_value=7e-156) UPA16 [Capsicum annuum];; (*SWP) sp|O82587|SWT12_ARATH (e_value=1e-92) Bidirectional sugar transporter SWEET12 OS=Arabidopsis thaliana GN=SWEET12 PE=2 SV=1;; (*TAIR) AT5G23660.1 (e_value=1e-93) | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285;; (*ITAG) Solyc03g097570.2.1 (e_value=3e-164) genomic_reference:SL2.40ch03 gene_region:53347015-53350566 transcript_region:SL2.40ch03:53347015..53350566- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00050688g0008.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0.5|0.33|3|0|343; (*GB) gi|147854667|emb|CAN80241.1| (e_value=9e-105) hypothetical protein VITISV_029129 [Vitis vinifera];; (*TAIR) AT5G35100.1 (e_value=3e-81) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr5:13360459-13361377 REVERSE LENGTH=281;; (*ITAG) Solyc07g007110.2.1 (e_value=3e-137) genomic_reference:SL2.40ch07 gene_region:1857663-1861091 transcript_region:SL2.40ch07:1857663..1861091+ go_terms:GO:0051082 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D7MHP4_ARALY); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082 NbS00050688g0005.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|147854667|emb|CAN80241.1| (e_value=8e-16) hypothetical protein VITISV_029129 [Vitis vinifera];; (*ITAG) Solyc07g007080.1.1 (e_value=6e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1852512-1852784 transcript_region:SL2.40ch07:1852512..1852784+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050688g0006.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.33|0|0.33|3|0|91 NbS00018658g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|441; (*GB) gi|30013673|gb|AAP03879.1| (e_value=2e-175) Avr9/Cf-9 rapidly elicited protein 216 [Nicotiana tabacum];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=9e-161) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=7e-162) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00005484g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.71|1|1|1|7|0|643; (*GB) gi|292806707|gb|ADE42483.1| (e_value=0.0) proton pump interactor 1 [Solanum tuberosum];; (*TAIR) AT4G27500.1 (e_value=6e-145) | Symbols: PPI1 | proton pump interactor 1 | chr4:13743614-13745900 FORWARD LENGTH=612;; (*ITAG) Solyc07g063100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62894231-62898079 transcript_region:SL2.40ch07:62894231..62898079- functional_description:"Proton pump interactor 1 (AHRD V1 **-- D5L6G0_SOLTU)"; NbS00005484g0011.1 protein AED:0.19 eAED:0.21 QI:0|0.8|0.72|0.90|0.7|0.63|11|373|619; (*GB) gi|225461459|ref|XP_002282417.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246918 [Vitis vinifera];; (*TAIR) AT1G53040.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr1:19764567-19766870 REVERSE LENGTH=540;; (*ITAG) Solyc07g063150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62942287-62946443 transcript_region:SL2.40ch07:62942287..62946443+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *--- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00013675g0011.1 protein AED:0.21 eAED:0.21 QI:459|0.9|0.90|1|0.6|0.72|11|348|382; (*GB) gi|225452380|ref|XP_002275670.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259507 [Vitis vinifera];; (*TAIR) AT5G14550.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4691321-4693732 REVERSE LENGTH=377;; (*ITAG) Solyc02g086550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43791778-43797970 transcript_region:SL2.40ch02:43791778..43797970- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00013675g0016.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|94; (*GB) gi|295137049|ref|YP_003587521.1| (e_value=2e-20) ribosomal protein S12 [Pisum sativum];; (*SWP) sp|Q2JMY0|RS12_SYNJB (e_value=3e-21) 30S ribosomal protein S12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rpsL PE=3 SV=1;; (*ITAG) ATCG00905.1 (e_value=6e-22) | Symbols: RPS12C, RPS12 | ribosomal protein S12C | chrC:97999-98793 REVERSE LENGTH=123;; (*ITAG) Solyc12g077650.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:60266495-60266828 transcript_region:SL2.40ch12:60266495..60266828+ go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 chloroplastic (AHRD V1 ***- C0LE98_9ROSI); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0005840,GO:0015935 NbS00013675g0012.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|109631600|gb|ABG35974.1| (e_value=7e-50) glutathione peroxidase [Helianthus annuus];; (*SWP) sp|Q6E2Z6|REHY_MEDTR (e_value=6e-51) 1-Cys peroxiredoxin OS=Medicago truncatula PE=2 SV=1;; (*TAIR) AT1G48130.1 (e_value=8e-48) | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780610-17781500 FORWARD LENGTH=216;; (*ITAG) Solyc03g096040.2.1 (e_value=6e-58) genomic_reference:SL2.40ch03 gene_region:51304230-51305908 transcript_region:SL2.40ch03:51304230..51305908+ go_terms:GO:0008379,GO:0004602 functional_description:"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity (AHRD V1 **** C4QX37_PICPG); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379,GO:0004602 NbS00013675g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|727; (*GB) gi|359488823|ref|XP_002273685.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=8e-125) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=6e-126) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc02g086570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43804985-43807168 transcript_region:SL2.40ch02:43804985..43807168+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00013675g0014.1 protein AED:0.24 eAED:0.24 QI:169|1|1|1|0.8|0.66|6|592|205; (*GB) gi|255567363|ref|XP_002524661.1| (e_value=8e-95) sirohydrochlorin ferrochelatase, putative [Ricinus communis];; (*SWP) sp|P61817|SIRB_BACME (e_value=1e-15) Sirohydrochlorin ferrochelatase OS=Bacillus megaterium GN=sirB PE=3 SV=1;; (*TAIR) AT1G50170.1 (e_value=3e-85) | Symbols: ATSIRB, SIRB | sirohydrochlorin ferrochelatase B | chr1:18582087-18583514 FORWARD LENGTH=225;; (*ITAG) Solyc02g086560.2.1 (e_value=1e-129) genomic_reference:SL2.40ch02 gene_region:43801536-43803839 transcript_region:SL2.40ch02:43801536..43803839+ go_terms:GO:0009236 functional_description:"Cobalamin (Vitamin B12) biosynthesis CbiX protein (AHRD V1 *--- A6C9M5_9PLAN); contains Interpro domain(s) IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX "; GO:0009236 NbS00013675g0013.1 protein AED:0.58 eAED:0.76 QI:6|0|0.33|1|0|0|3|0|44 NbS00013675g0015.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|363808070|ref|NP_001242470.1| (e_value=2e-38) uncharacterized protein LOC100786065 [Glycine max];; (*TAIR) AT2G46890.1 (e_value=1e-35) | Symbols: | Protein of unknown function (DUF1295) | chr2:19266879-19268134 REVERSE LENGTH=322;; (*ITAG) Solyc02g063390.2.1 (e_value=1e-55) genomic_reference:SL2.40ch02 gene_region:30063009-30065195 transcript_region:SL2.40ch02:30063009..30065195+ go_terms:GO:0016021 functional_description:"DUF1295 domain protein (Fragment) (AHRD V1 **-- C1N4N9_MICPS); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00040506g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|0|470; (*GB) gi|5777889|emb|CAB53515.1| (e_value=0.0) cysteine protease [Solanum tuberosum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=0.0) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=0.0) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc04g078540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60836302-60840029 transcript_region:SL2.40ch04:60836302..60840029- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00040506g0006.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.6|0|0.4|5|0|221; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=2e-51) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=4e-44) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=3e-45) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc04g078440.2.1 (e_value=7e-81) genomic_reference:SL2.40ch04 gene_region:60775938-60777179 transcript_region:SL2.40ch04:60775938..60777179+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7J664_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00009149g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|16580130|gb|AAK92213.1| (e_value=2e-111) bZIP transcription factor BZI-2 [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=2e-21) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=4e-47) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc01g109880.2.1 (e_value=9e-93) genomic_reference:SL2.40ch01 gene_region:88484807-88485881 transcript_region:SL2.40ch01:88484807..88485881+ go_terms:GO:0046982,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 ***- C0KYN1_SOLLC); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0046982,GO:0003677 NbS00027165g0005.1 protein AED:0.19 eAED:0.20 QI:0|0.4|0|1|0|0|6|0|269; (*GB) gi|359494762|ref|XP_003634834.1| (e_value=2e-73) PREDICTED: linoleate 9S-lipoxygenase 6, partial [Vitis vinifera];; (*SWP) sp|Q9LUW0|LOX5_ARATH (e_value=1e-52) Linoleate 9S-lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2;; (*TAIR) AT3G22400.1 (e_value=8e-54) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc09g055890.2.1 (e_value=9e-143) genomic_reference:SL2.40ch09 gene_region:41661108-41663614 transcript_region:SL2.40ch09:41661108..41663614+ go_terms:GO:0046872,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- B9SMP7_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0046872,GO:0055114 NbS00047522g0004.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|695; (*GB) gi|148909481|gb|ABR17838.1| (e_value=1e-115) unknown [Picea sitchensis];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=4e-107) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=3e-108) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc09g061340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:54318173-54320272 transcript_region:SL2.40ch09:54318173..54320272- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00047522g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.4|1|0.75|0.8|5|0|464; (*GB) gi|356566421|ref|XP_003551430.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=0.0) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc09g061330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54314614-54317361 transcript_region:SL2.40ch09:54314614..54317361- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00051736g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|3|326|165; (*GB) gi|147805778|emb|CAN69475.1| (e_value=1e-98) hypothetical protein VITISV_014376 [Vitis vinifera];; (*SWP) sp|Q8LFN9|AGD13_ARATH (e_value=6e-39) Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1;; (*TAIR) AT3G17980.1 (e_value=4e-95) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc03g118720.2.1 (e_value=2e-113) genomic_reference:SL2.40ch03 gene_region:61614316-61616974 transcript_region:SL2.40ch03:61614316..61616974+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7L7Y3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00019386g0009.1 protein AED:0.11 eAED:0.11 QI:419|0.93|0.85|1|0.69|0.58|34|596|2249; (*GB) gi|225459364|ref|XP_002285808.1| (e_value=0.0) PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera];; (*SWP) sp|Q38970|ACC1_ARATH (e_value=0.0) Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1;; (*TAIR) AT1G36160.2 (e_value=0.0) | Symbols: ACC1 | acetyl-CoA carboxylase 1 | chr1:13534196-13543773 FORWARD LENGTH=2254;; (*ITAG) Solyc12g056940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00014290g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.41|0.07|1|1|1|13|0|1884; (*GB) gi|359489586|ref|XP_002264136.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255258 [Vitis vinifera];; (*SWP) sp|P47104|RAV1_YEAST (e_value=3e-23) Regulator of V-ATPase in vacuolar membrane protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAV1 PE=1 SV=1;; (*TAIR) AT2G46560.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:19115570-19125856 REVERSE LENGTH=2513;; (*ITAG) Solyc01g096110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78967477-78987548 transcript_region:SL2.40ch01:78967477..78987548- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 *--- A1CP90_ASPCL); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00003700g0002.1 protein AED:0.00 eAED:0.01 QI:0|1|0.66|1|0.5|0.66|3|474|627; (*GB) gi|359485444|ref|XP_002276750.2| (e_value=1e-96) PREDICTED: uncharacterized protein LOC100245463 [Vitis vinifera];; (*TAIR) AT2G30990.2 (e_value=2e-61) | Symbols: | Protein of unknown function (DUF688) | chr2:13187776-13189761 REVERSE LENGTH=593;; (*ITAG) Solyc12g013960.1.1 (e_value=2e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4785891-4788385 transcript_region:SL2.40ch12:4785891..4788385- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00015974g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|225432682|ref|XP_002278578.1| (e_value=6e-42) PREDICTED: uncharacterized protein LOC100261343 [Vitis vinifera];; (*TAIR) AT1G05420.1 (e_value=4e-20) | Symbols: ATOFP12, OFP12 | ovate family protein 12 | chr1:1590073-1590753 FORWARD LENGTH=226;; (*ITAG) Solyc09g082080.1.1 (e_value=9e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:63313130-63313765 transcript_region:SL2.40ch09:63313130..63313765- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6UEQ7_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00021366g0002.1 protein AED:0.08 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|662; (*GB) gi|225461808|ref|XP_002285634.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc07g062130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62160950-62163332 transcript_region:SL2.40ch07:62160950..62163332+ go_terms:GO:0050377,GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-** B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050377,GO:0010280 NbS00008735g0010.1 protein AED:0.31 eAED:0.32 QI:0|1|0|1|1|1|2|0|266; (*GB) gi|255585128|ref|XP_002533269.1| (e_value=9e-106) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3UMR5|MCU_MOUSE (e_value=1e-12) Calcium uniporter protein, mitochondrial OS=Mus musculus GN=Mcu PE=2 SV=2;; (*TAIR) AT2G23790.1 (e_value=4e-95) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc02g065550.2.1 (e_value=3e-119) genomic_reference:SL2.40ch02 gene_region:31286098-31288095 transcript_region:SL2.40ch02:31286098..31288095- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00008735g0012.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|0.5|0.33|3|0|258; (*GB) gi|371539268|gb|AEL17349.2| (e_value=1e-58) TCP2 [Petunia x hybrida];; (*SWP) sp|Q9SBV6|CYCLD_ANTML (e_value=5e-35) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1;; (*TAIR) AT1G67260.2 (e_value=1e-30) | Symbols: TCP1 | TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351;; (*ITAG) Solyc02g089830.1.1 (e_value=5e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46104349-46105156 transcript_region:SL2.40ch02:46104349..46105156- functional_description:"CYCLOIDEA-like protein (Fragment) (AHRD V1 *-*- Q84RB2_9LAMI); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00001869g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|388; (*GB) gi|297734993|emb|CBI17355.3| (e_value=4e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G44200.1 (e_value=4e-64) | Symbols: | CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor | chr2:18276302-18278240 FORWARD LENGTH=493;; (*ITAG) Solyc02g084340.1.1 (e_value=4e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42033504-42034859 transcript_region:SL2.40ch02:42033504..42034859+ functional_description:"Pre-mRNA-splicing factor CWC25-like protein (AHRD V1 *-*- D0MR21_PHYIN); contains Interpro domain(s) IPR019339 CBF1-interacting co-repressor CIR, N-terminal "; NbS00019380g0011.1 protein AED:0.34 eAED:0.36 QI:0|0.83|0.69|1|0.75|0.69|13|0|812; (*GB) gi|224115866|ref|XP_002317144.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=8e-33) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT4G22120.6 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771;; (*ITAG) Solyc02g081030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39662050-39674092 transcript_region:SL2.40ch02:39662050..39674092- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00019380g0007.1 protein AED:0.23 eAED:0.23 QI:2|0.89|0.9|1|0.94|1|20|0|1015; (*GB) gi|225444321|ref|XP_002264138.1| (e_value=0.0) PREDICTED: leucyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q2S415|SYL_SALRD (e_value=0.0) Leucine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=leuS PE=3 SV=1;; (*TAIR) AT4G04350.1 (e_value=0.0) | Symbols: EMB2369 | tRNA synthetase class I (I, L, M and V) family protein | chr4:2128129-2133030 FORWARD LENGTH=973;; (*ITAG) Solyc02g080990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39628580-39635976 transcript_region:SL2.40ch02:39628580..39635976- go_terms:GO:0003729,GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** C6IZI6_9BACL); contains Interpro domain(s) IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial "; GO:0003729,GO:0004823 NbS00019380g0009.1 protein AED:0.34 eAED:0.34 QI:484|0|0.5|0.5|1|1|2|0|84 NbS00026726g0020.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.71|1|0.33|0.42|7|0|389; (*GB) gi|350540120|ref|NP_001233880.1| (e_value=0.0) C-4 methyl sterol oxidase [Solanum lycopersicum];; (*SWP) sp|Q8VWZ8|SMO22_ARATH (e_value=4e-169) Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1;; (*TAIR) AT1G07420.1 (e_value=3e-170) | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-oxidase 2-1 | chr1:2277910-2280033 FORWARD LENGTH=266;; (*ITAG) Solyc06g076410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43865635-43871996 transcript_region:SL2.40ch06:43865635..43871996- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00026726g0024.1 protein AED:0.25 eAED:0.25 QI:187|1|1|1|0.66|0.71|7|312|177; (*GB) gi|255558950|ref|XP_002520498.1| (e_value=2e-120) DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis];; (*SWP) sp|P46279|RPB7_SOYBN (e_value=3e-120) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G59180.1 (e_value=3e-118) | Symbols: NRPB7 | DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176;; (*ITAG) Solyc06g005790.2.1 (e_value=3e-129) genomic_reference:SL2.40ch06 gene_region:819742-824084 transcript_region:SL2.40ch06:819742..824084- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003899 NbS00026726g0021.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|216; (*GB) gi|3024506|sp|Q40523.1|RB11A_TOBAC (e_value=1e-142) RecName: Full=Ras-related protein Rab11A;; (*SWP) sp|Q40523|RB11A_TOBAC (e_value=3e-144) Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=5e-135) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc06g076450.2.1 (e_value=1e-142) genomic_reference:SL2.40ch06 gene_region:43888198-43890284 transcript_region:SL2.40ch06:43888198..43890284- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00026726g0010.1 protein AED:0.33 eAED:0.33 QI:0|0.2|0.16|0.83|1|1|6|0|905; (*GB) gi|11133833|sp|O04857.1|PP12_TOBAC (e_value=2e-175) RecName: Full=Serine/threonine-protein phosphatase PP1 isozyme 2;; (*SWP) sp|O04857|PP12_TOBAC (e_value=6e-177) Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1;; (*TAIR) AT5G59160.3 (e_value=8e-152) | Symbols: TOPP2, PPO | type one serine/threonine protein phosphatase 2 | chr5:23879567-23881102 FORWARD LENGTH=312;; (*ITAG) Solyc06g076430.2.1 (e_value=8e-173) genomic_reference:SL2.40ch06 gene_region:43879707-43882482 transcript_region:SL2.40ch06:43879707..43882482- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q9SPE2_MALDO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00026726g0023.1 protein AED:0.58 eAED:0.80 QI:0|0.5|0|1|0|0.33|3|0|300; (*GB) gi|224134643|ref|XP_002321873.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51880.1 (e_value=4e-38) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:21089395-21090775 FORWARD LENGTH=250;; (*ITAG) Solyc03g006820.2.1 (e_value=2e-53) genomic_reference:SL2.40ch03 gene_region:1322822-1326576 transcript_region:SL2.40ch03:1322822..1326576- go_terms:GO:0055114 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family family (Fragment) (AHRD V1 **-- Q08MC8_STIAU); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00026726g0026.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|0|0|3|0|317; (*GB) gi|359478906|ref|XP_002280383.2| (e_value=9e-106) PREDICTED: metal tolerance protein B-like [Vitis vinifera];; (*SWP) sp|Q6DBM8|MTPB_ARATH (e_value=7e-83) Metal tolerance protein B OS=Arabidopsis thaliana GN=MTPB PE=2 SV=1;; (*TAIR) AT2G29410.1 (e_value=5e-84) | Symbols: MTPB1, ATMTPB1 | metal tolerance protein B1 | chr2:12616810-12617937 FORWARD LENGTH=375;; (*ITAG) Solyc06g076440.1.1 (e_value=1e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43886333-43887454 transcript_region:SL2.40ch06:43886333..43887454+ go_terms:GO:0015633 functional_description:"Zinc-transporter-like protein (AHRD V1 **** B2BY01_9BRAS); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0015633 NbS00032959g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|153; (*ITAG) Solyc10g081000.1.1 (e_value=3e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61511728-61512180 transcript_region:SL2.40ch10:61511728..61512180+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002061g0001.1 protein AED:0.07 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|1078; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=6e-150) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=6e-119) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g075640.2.1 (e_value=4e-145) genomic_reference:SL2.40ch08 gene_region:56943109-56946421 transcript_region:SL2.40ch08:56943109..56946421+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00004241g0005.1 protein AED:0.15 eAED:0.15 QI:33|0.9|0.63|1|0.9|1|11|0|1089; (*GB) gi|225433862|ref|XP_002264772.1| (e_value=0.0) PREDICTED: ATPase family AAA domain-containing protein 2B-like [Vitis vinifera];; (*SWP) sp|F4IAE9|Y1591_ARATH (e_value=0.0) ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1;; (*TAIR) AT1G05910.1 (e_value=0.0) | Symbols: | cell division cycle protein 48-related / CDC48-related | chr1:1790796-1796503 FORWARD LENGTH=1210;; (*ITAG) Solyc04g076180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58710783-58718831 transcript_region:SL2.40ch04:58710783..58718831+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00004241g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|434; (*GB) gi|359492937|ref|XP_002283889.2| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=2e-44) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G09750.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:3157541-3158960 FORWARD LENGTH=449;; (*ITAG) Solyc04g076190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58719018-58720325 transcript_region:SL2.40ch04:58719018..58720325- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TDX6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00045191g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0.33|0.66|1|1|3|0|168; (*GB) gi|5726575|gb|AAD48472.1|AF170089_1 (e_value=5e-61) histone H1C [Nicotiana tabacum];; (*SWP) sp|P40267|H1_SOLPN (e_value=8e-46) Histone H1 OS=Solanum pennellii PE=2 SV=1;; (*TAIR) AT2G18050.1 (e_value=5e-29) | Symbols: HIS1-3 | histone H1-3 | chr2:7846095-7846670 FORWARD LENGTH=167;; (*ITAG) Solyc02g084240.2.1 (e_value=6e-48) genomic_reference:SL2.40ch02 gene_region:41975280-41976442 transcript_region:SL2.40ch02:41975280..41976442+ go_terms:GO:0005634,GO:0000786 functional_description:"H1 histone-like protein (AHRD V1 ***- Q43511_SOLLC); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbS00024550g0015.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|355; (*GB) gi|54261825|gb|AAV31175.1| (e_value=2e-38) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=1e-20) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-17) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc08g005500.2.1 (e_value=5e-56) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024550g0005.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|193795874|gb|ACF21990.1| (e_value=2e-56) NBS-coding resistance gene protein [Nicotiana tabacum];; (*SWP) sp|Q6L406|R1B19_SOLDE (e_value=1e-29) Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2;; (*TAIR) AT1G53350.1 (e_value=4e-23) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc08g005500.2.1 (e_value=2e-58) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024550g0012.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|1|1|2|0|390; (*GB) gi|190607561|gb|ACE79443.1| (e_value=7e-92) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=7e-44) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-29) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=7e-121) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024550g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|54261825|gb|AAV31175.1| (e_value=5e-57) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-34) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=1e-26) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc08g005500.2.1 (e_value=9e-87) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024550g0010.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|54261825|gb|AAV31175.1| (e_value=1e-30) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=6e-20) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*ITAG) Solyc04g015220.2.1 (e_value=3e-30) genomic_reference:SL2.40ch04 gene_region:5406762-5409516 transcript_region:SL2.40ch04:5406762..5409516- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024550g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|882; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=1e-144) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-90) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-65) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00043886g0001.1 protein AED:0.25 eAED:0.26 QI:0|1|0.5|1|1|1|4|0|631; (*GB) gi|224087090|ref|XP_002308061.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RX87|RFS6_ARATH (e_value=0.0) Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2;; (*TAIR) AT5G20250.4 (e_value=0.0) | Symbols: DIN10 | Raffinose synthase family protein | chr5:6833730-6836635 FORWARD LENGTH=844;; (*ITAG) Solyc07g007930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2591006-2595679 transcript_region:SL2.40ch07:2591006..2595679+ go_terms:GO:0006508 functional_description:"Alkaline alpha galactosidase 2 (AHRD V1 **-- Q575Z7_MAIZE); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0006508 NbS00043886g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|359484223|ref|XP_002285418.2| (e_value=3e-68) PREDICTED: probable galactinol--sucrose galactosyltransferase 6-like [Vitis vinifera];; (*SWP) sp|Q8RX87|RFS6_ARATH (e_value=2e-46) Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2;; (*TAIR) AT5G20250.4 (e_value=1e-48) | Symbols: DIN10 | Raffinose synthase family protein | chr5:6833730-6836635 FORWARD LENGTH=844;; (*ITAG) Solyc07g007930.2.1 (e_value=4e-98) genomic_reference:SL2.40ch07 gene_region:2591006-2595679 transcript_region:SL2.40ch07:2591006..2595679+ go_terms:GO:0006508 functional_description:"Alkaline alpha galactosidase 2 (AHRD V1 **-- Q575Z7_MAIZE); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0006508 NbS00041702g0012.1 protein AED:0.08 eAED:0.19 QI:0|0|0|0.8|0.5|0.4|5|0|567; (*GB) gi|359481040|ref|XP_002266469.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330-like [Vitis vinifera];; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc09g090220.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65118730-65121146 transcript_region:SL2.40ch09:65118730..65121146+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00041702g0008.1 protein AED:0.24 eAED:0.26 QI:294|0.85|0.86|1|0.78|0.66|15|0|618; (*GB) gi|62857016|dbj|BAD95893.1| (e_value=0.0) Ser/Thr protein kinase [Lotus japonicus];; (*SWP) sp|Q9NBK5|TRC_DROME (e_value=7e-139) Serine/threonine-protein kinase tricorner OS=Drosophila melanogaster GN=trc PE=1 SV=1;; (*TAIR) AT4G14350.3 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:8256353-8259934 REVERSE LENGTH=548;; (*ITAG) Solyc09g090200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65106209-65114248 transcript_region:SL2.40ch09:65106209..65114248+ go_terms:GO:0004711 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 **** B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00049402g0006.1 protein AED:0.48 eAED:0.51 QI:57|0|0|1|0|0.33|3|0|399; (*GB) gi|242069191|ref|XP_002449872.1| (e_value=4e-20) hypothetical protein SORBIDRAFT_05g024695 [Sorghum bicolor];; (*ITAG) Solyc10g038180.1.1 (e_value=6e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:20317853-20319038 transcript_region:SL2.40ch10:20317853..20319038- functional_description:"Polyprotein (AHRD V1 **-- Q94KV0_ARATH)"; NbS00049402g0005.1 protein AED:0.44 eAED:0.56 QI:0|0|0|0.66|0|0.33|6|0|280; (*GB) gi|359477392|ref|XP_002280640.2| (e_value=6e-49) PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=6e-24) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT4G24010.1 (e_value=2e-24) | Symbols: ATCSLG1, CSLG1 | cellulose synthase like G1 | chr4:12466391-12469760 FORWARD LENGTH=760;; (*ITAG) Solyc03g005450.2.1 (e_value=4e-71) genomic_reference:SL2.40ch03 gene_region:338588-346614 transcript_region:SL2.40ch03:338588..346614+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B2LWL9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00000774g0010.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|0.16|0.28|7|0|1451; (*GB) gi|208429106|gb|ACI26722.1| (e_value=0.0) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=9e-112) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=7e-113) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=7e-173) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00000774g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.16|0|1|0.16|0.42|7|0|1578; (*GB) gi|208429106|gb|ACI26722.1| (e_value=0.0) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=5e-112) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=4e-113) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=8e-178) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00019139g0005.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|662; (*GB) gi|147812559|emb|CAN70631.1| (e_value=0.0) hypothetical protein VITISV_020725 [Vitis vinifera];; (*SWP) sp|Q9STS9|PP268_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1;; (*TAIR) AT3G47840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17651912-17654032 FORWARD LENGTH=706;; (*ITAG) Solyc02g068630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33168748-33170865 transcript_region:SL2.40ch02:33168748..33170865+ go_terms:GO:0005329,GO:0019534 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRG2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005329,GO:0019534 NbS00019139g0015.1 protein AED:0.25 eAED:0.28 QI:0|0.71|0.62|1|0.71|0.75|8|254|266; (*GB) gi|325087307|gb|ADY77003.1| (e_value=1e-143) pyrroline-5-carboxylate reductase [Ipomoea batatas];; (*SWP) sp|O04016|P5CR_ACTCH (e_value=5e-139) Pyrroline-5-carboxylate reductase OS=Actinidia chinensis PE=2 SV=1;; (*TAIR) AT5G14800.1 (e_value=4e-124) | Symbols: P5CR, AT-P5R, AT-P5C1, EMB2772 | pyrroline-5- carboxylate (P5C) reductase | chr5:4786190-4787618 REVERSE LENGTH=276;; (*ITAG) Solyc02g068640.2.1 (e_value=9e-164) genomic_reference:SL2.40ch02 gene_region:33172764-33180223 transcript_region:SL2.40ch02:33172764..33180223+ go_terms:GO:0042802,GO:0004735 functional_description:"Pyrroline-5-carboxylate reductase (AHRD V1 **** D2DEW0_PHYES); contains Interpro domain(s) IPR000304 Delta 1-pyrroline-5-carboxylate reductase "; GO:0042802,GO:0004735 NbS00019139g0006.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|66 NbS00019139g0003.1 protein AED:0.81 eAED:0.80 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|15226210|ref|NP_180334.1| (e_value=1e-14) cysteine/histidine-rich C1 domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT2G27660.1 (e_value=3e-17) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc02g068680.1.1 (e_value=5e-121) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:33202425-33203810 transcript_region:SL2.40ch02:33202425..33203810+ go_terms:GO:0023034,GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FK70_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0023034,GO:0008270 NbS00019139g0004.1 protein AED:0.09 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|99 NbS00019139g0002.1 protein AED:0.25 eAED:0.25 QI:85|0|0.5|1|0|0.5|2|0|244; (*GB) gi|255577501|ref|XP_002529629.1| (e_value=2e-151) tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8GXB7|TRMB_ARATH (e_value=4e-146) tRNA (guanine-N(7)-)-methyltransferase OS=Arabidopsis thaliana GN=At5g24840 PE=2 SV=1;; (*TAIR) AT5G24840.1 (e_value=3e-147) | Symbols: | tRNA (guanine-N-7) methyltransferase | chr5:8533897-8534652 REVERSE LENGTH=251;; (*ITAG) Solyc02g068650.1.1 (e_value=1e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33182847-33183581 transcript_region:SL2.40ch02:33182847..33183581- go_terms:GO:0005515,GO:0008176 functional_description:"tRNA guanine-N7 methyltransferase (AHRD V1 **** C1BTP4_9MAXI); contains Interpro domain(s) IPR003358 tRNA (guanine-N-7) methyltransferase "; GO:0005515,GO:0008176 NbS00044723g0008.1 protein AED:0.08 eAED:0.08 QI:218|1|1|1|1|1|4|207|374; (*GB) gi|2414570|emb|CAB16317.1| (e_value=0.0) cysteine proteinase precursor [Nicotiana tabacum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=2e-154) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=9e-160) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc02g093040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48560840-48562364 transcript_region:SL2.40ch02:48560840..48562364- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00007202g0010.1 protein AED:0.26 eAED:0.26 QI:590|0|0.33|1|1|1|3|0|346; (*GB) gi|5821136|dbj|BAA83710.1| (e_value=2e-161) heat shock factor [Nicotiana tabacum];; (*SWP) sp|P22335|HSF24_SOLPE (e_value=3e-144) Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1;; (*TAIR) AT4G36990.1 (e_value=8e-75) | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat shock factor 4 | chr4:17440660-17441706 FORWARD LENGTH=284;; (*ITAG) Solyc02g090820.2.1 (e_value=1e-145) genomic_reference:SL2.40ch02 gene_region:46880125-46883382 transcript_region:SL2.40ch02:46880125..46883382- go_terms:GO:0003677,GO:0016564 functional_description:"Heat stress transcription factor (AHRD V1 **** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677,GO:0016564 NbS00007202g0011.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|1|0.5|0.66|3|13|119; (*GB) gi|225438710|ref|XP_002282456.1| (e_value=7e-43) PREDICTED: uncharacterized protein LOC100250717 [Vitis vinifera];; (*TAIR) AT4G33985.1 (e_value=2e-36) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc02g090840.2.1 (e_value=6e-55) genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00008779g0007.1 protein AED:0.24 eAED:0.26 QI:302|0.66|0.7|0.9|0.66|0.7|10|1347|303; (*GB) gi|357451011|ref|XP_003595782.1| (e_value=2e-84) hypothetical protein MTR_2g060770 [Medicago truncatula];; (*TAIR) AT5G13020.1 (e_value=6e-66) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc03g063280.2.1 (e_value=2e-153) genomic_reference:SL2.40ch03 gene_region:31328445-31334974 transcript_region:SL2.40ch03:31328445..31334974+ functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00008779g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|3|0|222; (*GB) gi|224053018|ref|XP_002297666.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19630.1 (e_value=5e-67) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6628147-6629937 REVERSE LENGTH=228;; (*ITAG) Solyc03g063290.2.1 (e_value=4e-89) genomic_reference:SL2.40ch03 gene_region:31335389-31336428 transcript_region:SL2.40ch03:31335389..31336428- functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YC2_OSTTA)"; NbS00020447g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|255551719|ref|XP_002516905.1| (e_value=2e-64) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G16510.1 (e_value=8e-44) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:5617112-5618194 REVERSE LENGTH=360;; (*ITAG) Solyc01g067000.2.1 (e_value=8e-95) genomic_reference:SL2.40ch01 gene_region:67725975-67727205 transcript_region:SL2.40ch01:67725975..67727205- functional_description:"SRC2 homolog (Fragment) (AHRD V1 *-*- B3IYJ9_9SOLA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00020447g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|4|0|236; (*GB) gi|113205268|gb|ABI34319.1| (e_value=4e-23) Putative F-box protein, identical [Solanum demissum];; (*ITAG) Solyc09g091710.1.1 (e_value=7e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00046111g0004.1 protein AED:0.16 eAED:0.19 QI:453|0.7|0.81|1|0.5|0.63|11|587|490; (*GB) gi|255549256|ref|XP_002515682.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6N075|MFSD5_HUMAN (e_value=3e-67) Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2;; (*TAIR) AT4G27720.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:13831203-13833521 FORWARD LENGTH=460;; (*ITAG) Solyc03g082660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46115283-46120778 transcript_region:SL2.40ch03:46115283..46120778+ functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00027661g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|534; (*GB) gi|356510322|ref|XP_003523888.1| (e_value=0.0) PREDICTED: cytochrome P450 82C4-like [Glycine max];; (*SWP) sp|Q9SZ46|C82C4_ARATH (e_value=0.0) Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=0.0) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc12g088970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62586297-62588536 transcript_region:SL2.40ch12:62586297..62588536+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00027661g0002.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|65 NbS00004696g0002.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.6|1|1|1|5|580|316; (*GB) gi|255547083|ref|XP_002514599.1| (e_value=2e-107) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G69030.1 (e_value=5e-70) | Symbols: | BSD domain-containing protein | chr1:25947429-25949262 REVERSE LENGTH=317;; (*ITAG) Solyc12g038630.1.1 (e_value=4e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:36089756-36097242 transcript_region:SL2.40ch12:36089756..36097242- functional_description:"BSD domain containing protein (AHRD V1 **-- B4FWY5_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00004696g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|225455716|ref|XP_002267092.1| (e_value=1e-37) PREDICTED: dof zinc finger protein DOF5.4-like [Vitis vinifera];; (*SWP) sp|Q8LDR0|DOF54_ARATH (e_value=4e-29) Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2;; (*TAIR) AT5G60850.1 (e_value=3e-30) | Symbols: OBP4 | OBF binding protein 4 | chr5:24480578-24481501 FORWARD LENGTH=307;; (*ITAG) Solyc11g010940.1.1 (e_value=7e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3987715-3989539 transcript_region:SL2.40ch11:3987715..3989539- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00026576g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|0.5|0.66|3|0|185; (*GB) gi|46020014|dbj|BAD13499.1| (e_value=7e-20) dehydrin [Nicotiana tabacum];; (*ITAG) Solyc04g082200.2.1 (e_value=2e-20) genomic_reference:SL2.40ch04 gene_region:63550865-63552237 transcript_region:SL2.40ch04:63550865..63552237- go_terms:GO:0009415 functional_description:"Dehydrin (AHRD V1 *-*- Q1A4H3_COFCA); contains Interpro domain(s) IPR000167 Dehydrin "; GO:0009415 NbS00036856g0014.1 protein AED:0.04 eAED:0.04 QI:409|0.71|0.87|0.87|1|1|8|348|380; (*GB) gi|225450201|ref|XP_002264792.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240969 [Vitis vinifera];; (*TAIR) AT5G48020.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:19462888-19464790 REVERSE LENGTH=355;; (*ITAG) Solyc10g037950.1.1 (e_value=3e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:17993608-17995316 transcript_region:SL2.40ch10:17993608..17995316+ functional_description:"X7 (Fragment) (AHRD V1 *-*- B2CZN0_SILDI)"; NbS00036856g0013.1 protein AED:0.41 eAED:0.41 QI:0|0.25|0.2|0.4|0.25|0|5|44|221; (*GB) gi|224106031|ref|XP_002314019.1| (e_value=7e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|P82277|RRP2_SPIOL (e_value=1e-86) 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1;; (*TAIR) AT3G52150.2 (e_value=2e-89) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19342074-19343090 FORWARD LENGTH=253;; (*ITAG) Solyc01g006940.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:1512591-1515492 transcript_region:SL2.40ch01:1512591..1515492+ go_terms:GO:0003743 functional_description:"Poly(U)-binding-splicing factor PUF60 (AHRD V1 *--* PUF60_BOVIN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003743 NbS00061779g0005.1 protein AED:0.11 eAED:0.12 QI:0|0.66|0|1|0.66|0.5|4|0|329; (*GB) gi|224069525|ref|XP_002302990.1| (e_value=4e-84) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKR0|MT878_ARATH (e_value=2e-57) Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1;; (*TAIR) AT1G15125.1 (e_value=3e-67) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5204625-5205912 FORWARD LENGTH=351;; (*ITAG) Solyc02g091140.2.1 (e_value=2e-168) genomic_reference:SL2.40ch02 gene_region:47125658-47127421 transcript_region:SL2.40ch02:47125658..47127421- go_terms:GO:0030795 functional_description:"S-adenosyl-L-methionine carboxyl methyltransferase family protein (AHRD V1 **** D7KVS6_ARALY); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0030795 NbS00003997g0005.1 protein AED:0.17 eAED:0.18 QI:24|1|0.5|1|1|1|4|0|123; (*GB) gi|224067112|ref|XP_002302361.1| (e_value=3e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q38840|AGL17_ARATH (e_value=7e-31) Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=6e-32) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc04g076700.2.1 (e_value=1e-66) genomic_reference:SL2.40ch04 gene_region:59185508-59196734 transcript_region:SL2.40ch04:59185508..59196734+ go_terms:GO:0046982 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00003997g0007.1 protein AED:0.27 eAED:0.32 QI:0|0|0|0.75|0.66|0.5|4|0|111; (*GB) gi|224067112|ref|XP_002302361.1| (e_value=9e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=2e-34) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.1 (e_value=4e-34) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc02g091550.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00003997g0009.1 protein AED:0.43 eAED:0.49 QI:0|0|0|1|0.5|0.66|3|0|62 NbS00017008g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0.33|0.66|1|1|3|0|241; (*GB) gi|255578926|ref|XP_002530316.1| (e_value=4e-67) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q4KLT0|RN217_XENLA (e_value=1e-16) Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1;; (*TAIR) AT3G14250.1 (e_value=1e-49) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc01g110100.2.1 (e_value=8e-104) genomic_reference:SL2.40ch01 gene_region:88644859-88648051 transcript_region:SL2.40ch01:88644859..88648051+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00017008g0001.1 protein AED:0.14 eAED:0.23 QI:404|1|0.5|1|0|0.5|2|0|377; (*ITAG) Solyc01g109730.1.1 (e_value=3e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018078g0011.1 protein AED:0.03 eAED:0.06 QI:0|0|0|0.75|0.33|0.5|4|0|890; (*GB) gi|359496368|ref|XP_003635220.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242100 [Vitis vinifera];; (*SWP) sp|O82175|SUVH5_ARATH (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1;; (*TAIR) AT2G35160.1 (e_value=0.0) | Symbols: SUVH5, SGD9 | SU(VAR)3-9 homolog 5 | chr2:14823562-14825946 FORWARD LENGTH=794;; (*ITAG) Solyc08g077940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58996460-58999573 transcript_region:SL2.40ch08:58996460..58999573- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00018078g0010.1 protein AED:0.09 eAED:0.11 QI:0|0.5|0.4|1|0.5|0.6|5|0|238; (*GB) gi|688424|dbj|BAA05476.1| (e_value=2e-89) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|O23547|EXLB1_ARATH (e_value=2e-64) Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=1e-65) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077910.2.1 (e_value=2e-140) genomic_reference:SL2.40ch08 gene_region:58978783-58981044 transcript_region:SL2.40ch08:58978783..58981044+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WRS3_ARATH); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00053470g0003.1 protein AED:0.27 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|356524187|ref|XP_003530713.1| (e_value=3e-53) PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Glycine max];; (*SWP) sp|O04659|PP398_ARATH (e_value=8e-38) Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2;; (*TAIR) AT5G27110.1 (e_value=6e-39) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9538572-9540647 REVERSE LENGTH=691;; (*ITAG) Solyc02g011680.2.1 (e_value=3e-66) genomic_reference:SL2.40ch02 gene_region:4611745-4614036 transcript_region:SL2.40ch02:4611745..4614036+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M697_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00053470g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|0.75|1|5|0|197; (*GB) gi|224128928|ref|XP_002329001.1| (e_value=2e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=8e-65) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT3G02800.1 (e_value=1e-83) | Symbols: | Tyrosine phosphatase family protein | chr3:606638-607704 REVERSE LENGTH=203;; (*ITAG) Solyc05g055740.2.1 (e_value=3e-130) genomic_reference:SL2.40ch05 gene_region:64407381-64409767 transcript_region:SL2.40ch05:64407381..64409767+ go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00053470g0012.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|0|0|2|0|447; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=3e-83) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=8e-77) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=8e-55) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g013280.2.1 (e_value=2e-85) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00010956g0009.1 protein AED:0.01 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|292; (*GB) gi|297740406|emb|CBI30588.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G44310.2 (e_value=8e-18) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr5:17847998-17849436 REVERSE LENGTH=331;; (*ITAG) Solyc02g077970.2.1 (e_value=5e-130) genomic_reference:SL2.40ch02 gene_region:37370107-37371541 transcript_region:SL2.40ch02:37370107..37371541- functional_description:"Late embryo abundance protein (Fragment) (AHRD V1 *-*- C6F8V9_PSEMZ)"; NbS00010956g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|1|1|4|0|328; (*GB) gi|359496589|ref|XP_003635272.1| (e_value=4e-73) PREDICTED: clathrin light chain 1-like [Vitis vinifera];; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=4e-57) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=3e-58) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc02g078540.2.1 (e_value=6e-112) genomic_reference:SL2.40ch02 gene_region:37780626-37784558 transcript_region:SL2.40ch02:37780626..37784558- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00001369g0001.1 protein AED:0.34 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|7385217|gb|AAF61738.1|AF244519_1 (e_value=2e-72) beta-ketoacyl-ACP synthetase 1 [Brassica napus];; (*SWP) sp|P52410|KASC1_ARATH (e_value=3e-71) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.2 (e_value=9e-73) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=418;; (*ITAG) Solyc08g016170.2.1 (e_value=1e-88) genomic_reference:SL2.40ch08 gene_region:6886393-6897476 transcript_region:SL2.40ch08:6886393..6897476+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl carrier protein) synthase II (AHRD V1 **** D6YNQ6_CHLT1); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbC26098743g0003.1 protein AED:0.27 eAED:0.27 QI:206|1|1|1|1|1|2|0|109; (*GB) gi|255575432|ref|XP_002528618.1| (e_value=1e-40) protein with unknown function [Ricinus communis];; (*TAIR) AT1G11400.3 (e_value=9e-28) | Symbols: PYM | partner of Y14-MAGO | chr1:3838777-3839978 FORWARD LENGTH=204;; (*ITAG) Solyc01g104460.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:84688779-84693304 transcript_region:SL2.40ch01:84688779..84693304+ go_terms:GO:0005515 functional_description:"Partner of Y14 and mago (AHRD V1 *-*- WIBG_CULQU); contains Interpro domain(s) IPR015362 Exon junction complex, Pym "; GO:0005515 NbS00002545g0001.1 protein AED:0.24 eAED:0.24 QI:78|1|0.66|1|1|1|3|309|167; (*GB) gi|357476213|ref|XP_003608392.1| (e_value=1e-86) Isochorismatase family protein pncA, putative [Medicago truncatula];; (*TAIR) AT2G22570.1 (e_value=1e-69) | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9589604-9590846 REVERSE LENGTH=244;; (*ITAG) Solyc01g106000.2.1 (e_value=8e-101) genomic_reference:SL2.40ch01 gene_region:85753870-85755546 transcript_region:SL2.40ch01:85753870..85755546- go_terms:GO:0008936 functional_description:"Isochorismatase hydrolase (AHRD V1 ***- B6TNR9_MAIZE); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00002545g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.90|1|1|1|11|0|697; (*GB) gi|225464089|ref|XP_002271011.1| (e_value=0.0) PREDICTED: protein EXECUTER 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=0.0) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1;; (*TAIR) AT4G33630.2 (e_value=0.0) | Symbols: EX1 | Protein of unknown function (DUF3506) | chr4:16155560-16159094 FORWARD LENGTH=684;; (*ITAG) Solyc01g105990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85744268-85753629 transcript_region:SL2.40ch01:85744268..85753629+ functional_description:"Os01g0107900 protein (Fragment) (AHRD V1 *-*- Q0JRC9_ORYSJ)"; NbS00009996g0023.1 protein AED:0.14 eAED:0.14 QI:86|0.9|0.81|1|0.6|0.63|11|768|379; (*GB) gi|297743769|emb|CBI36652.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2KID2|NTHL1_BOVIN (e_value=1e-67) Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1;; (*TAIR) AT2G31450.1 (e_value=7e-129) | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=379;; (*ITAG) Solyc06g073400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41622096-41629236 transcript_region:SL2.40ch06:41622096..41629236- go_terms:GO:0034042,GO:0034043 functional_description:"Endonuclease III-like protein 1 (AHRD V1 ***- B6U0P3_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0034042,GO:0034043 NbS00009996g0027.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.75|0.8|5|227|330; (*GB) gi|224074883|ref|XP_002304474.1| (e_value=3e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GMF8|RHDF1_DANRE (e_value=2e-12) Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1;; (*TAIR) AT1G63120.1 (e_value=8e-120) | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23409054-23410725 REVERSE LENGTH=317;; (*ITAG) Solyc08g080500.2.1 (e_value=6e-152) genomic_reference:SL2.40ch08 gene_region:60943133-60947585 transcript_region:SL2.40ch08:60943133..60947585- go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 ***- D7M0H4_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00009996g0026.1 protein AED:0.33 eAED:0.33 QI:87|0.83|0.71|1|0.66|0.85|7|314|282; (*GB) gi|224074887|ref|XP_002304476.1| (e_value=7e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05B83|RFC2_BOVIN (e_value=2e-136) Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1;; (*TAIR) AT1G63160.1 (e_value=8e-170) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00009996g0006.1 protein AED:0.26 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|209954721|dbj|BAG80551.1| (e_value=8e-77) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=2e-46) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=1e-47) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc05g055840.2.1 (e_value=4e-62) genomic_reference:SL2.40ch05 gene_region:64469515-64471198 transcript_region:SL2.40ch05:64469515..64471198- go_terms:GO:0015020 functional_description:"Glucosyltransferase (AHRD V1 ***- A7M6J0_DIACA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00009996g0024.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|146 NbS00009996g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=4e-130) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-38) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G03620.1 (e_value=6e-74) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=7e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00009996g0031.1 protein AED:0.26 eAED:0.30 QI:266|0.5|0.4|1|0.25|0.6|5|0|312; (*GB) gi|350535897|ref|NP_001233963.1| (e_value=5e-177) protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Solanum lycopersicum];; (*SWP) sp|P93227|FNTA_SOLLC (e_value=2e-178) Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1;; (*TAIR) AT3G59380.1 (e_value=1e-106) | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnesyltransferase A | chr3:21944209-21945781 FORWARD LENGTH=326;; (*ITAG) Solyc06g073390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41616510-41621899 transcript_region:SL2.40ch06:41616510..41621899+ go_terms:GO:0004660 functional_description:"Farnesyltransferase/type I geranylgeranyltransferase alpha subunit (AHRD V1 **** Q6EZ49_CATRO); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0004660 NbS00009996g0030.1 protein AED:0.16 eAED:0.37 QI:163|0|0.5|1|1|1|2|0|135; (*ITAG) Solyc08g080480.2.1 (e_value=3e-25) genomic_reference:SL2.40ch08 gene_region:60935501-60937737 transcript_region:SL2.40ch08:60935501..60937737+ go_terms:GO:0045735 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0045735 NbS00045248g0003.1 protein AED:0.05 eAED:0.05 QI:109|0.83|0.85|1|0.5|0.57|7|227|433; (*GB) gi|325516248|gb|ADZ24702.1| (e_value=0.0) tyrosine aminotransferase 1 [Solanum pennellii];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=0.0) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=0.0) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc10g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1508116-1511280 transcript_region:SL2.40ch10:1508116..1511280- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** Q8GUE9_SOLSC); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00018851g0007.1 protein AED:0.23 eAED:0.23 QI:299|0.90|0.86|0.95|0.77|0.78|23|0|660; (*GB) gi|255565087|ref|XP_002523536.1| (e_value=0.0) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT5G35180.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1336) | chr5:13424538-13432699 FORWARD LENGTH=778;; (*ITAG) Solyc07g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:16771-35135 transcript_region:SL2.40ch07:16771..35135+ go_terms:GO:0035091 functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *--- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0035091 NbS00005386g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|225453712|ref|XP_002271138.1| (e_value=9e-53) PREDICTED: BON1-associated protein 2-like [Vitis vinifera];; (*SWP) sp|Q58FX0|BAP2_ARATH (e_value=1e-29) BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1;; (*TAIR) AT2G45760.1 (e_value=1e-30) | Symbols: BAP2, BAL | BON association protein 2 | chr2:18847125-18847748 REVERSE LENGTH=207;; (*ITAG) Solyc01g091590.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:76943808-76944592 transcript_region:SL2.40ch01:76943808..76944592+ go_terms:GO:0005515,GO:0005543 functional_description:"SRC2 protein (AHRD V1 ***- A7XAJ8_9CONI); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; GO:0005515,GO:0005543 NbS00005386g0001.1 protein AED:0.22 eAED:0.22 QI:1166|1|1|1|0.33|0.25|4|833|91; (*GB) gi|255541492|ref|XP_002511810.1| (e_value=3e-42) acyl-CoA thioesterase, putative [Ricinus communis];; (*TAIR) AT3G61200.1 (e_value=3e-35) | Symbols: | Thioesterase superfamily protein | chr3:22657599-22658350 REVERSE LENGTH=188;; (*ITAG) Solyc01g091560.2.1 (e_value=2e-53) genomic_reference:SL2.40ch01 gene_region:76930674-76931868 transcript_region:SL2.40ch01:76930674..76931868+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** D7LS72_ARALY); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00005386g0010.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0|0.5|2|0|96; (*GB) gi|224067856|ref|XP_002302567.1| (e_value=4e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT3G61200.1 (e_value=8e-22) | Symbols: | Thioesterase superfamily protein | chr3:22657599-22658350 REVERSE LENGTH=188;; (*ITAG) Solyc01g091550.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:76927152-76930016 transcript_region:SL2.40ch01:76927152..76930016+ go_terms:GO:0016291 functional_description:"Thioesterase family protein (AHRD V1 **** B6UFY3_MAIZE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00005386g0009.1 protein AED:0.30 eAED:0.30 QI:158|0.55|0.8|0.9|0.88|0.8|10|161|323; (*GB) gi|356520452|ref|XP_003528876.1| (e_value=1e-135) PREDICTED: cell division protein ftsY homolog [Glycine max];; (*SWP) sp|O80842|CFTSY_ARATH (e_value=6e-130) Cell division protein FtsY homolog, chloroplastic OS=Arabidopsis thaliana GN=CPFTSY PE=1 SV=2;; (*TAIR) AT2G45770.1 (e_value=4e-131) | Symbols: CPFTSY, FRD4 | signal recognition particle receptor protein, chloroplast (FTSY) | chr2:18851248-18853402 FORWARD LENGTH=366;; (*ITAG) Solyc01g091580.2.1 (e_value=7e-162) genomic_reference:SL2.40ch01 gene_region:76934096-76939715 transcript_region:SL2.40ch01:76934096..76939715- go_terms:GO:0005525,GO:0017111,GO:0006614 functional_description:"Signal recognition particle-docking protein FtsY (AHRD V1 ***- A7H885_ANADF); contains Interpro domain(s) IPR004390 Cell division transporter substrate-binding protein FtsY "; GO:0005525,GO:0017111,GO:0006614 NbS00025148g0014.1 protein AED:0.16 eAED:0.17 QI:8|1|0.33|1|1|1|3|0|172; (*GB) gi|255566925|ref|XP_002524445.1| (e_value=7e-96) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=7e-60) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT4G17486.1 (e_value=5e-61) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:9749992-9751201 REVERSE LENGTH=224;; (*ITAG) Solyc12g006880.1.1 (e_value=9e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1323811-1329389 transcript_region:SL2.40ch12:1323811..1329389- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00025148g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|0.5|0.6|5|325|538; (*GB) gi|350539625|ref|NP_001234737.1| (e_value=0.0) putative brassinosteroid hydroxylase [Solanum lycopersicum];; (*SWP) sp|O48786|C734A_ARATH (e_value=0.0) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=0.0) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc12g006860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1297046-1301535 transcript_region:SL2.40ch12:1297046..1301535+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00025148g0011.1 protein AED:0.42 eAED:0.44 QI:0|0.2|0.16|0.66|0.2|0.16|6|0|140; (*GB) gi|255566923|ref|XP_002524444.1| (e_value=1e-51) Acyl-protein thioesterase, putative [Ricinus communis];; (*TAIR) AT5G20060.3 (e_value=1e-48) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252;; (*ITAG) Solyc12g006870.1.1 (e_value=6e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1315304-1322819 transcript_region:SL2.40ch12:1315304..1322819+ go_terms:GO:0016787 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0016787 NbS00036545g0001.1 protein AED:0.48 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|66 NbS00004374g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|0.66|3|244|1059; (*GB) gi|225438587|ref|XP_002276354.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g10020 [Vitis vinifera];; (*SWP) sp|Q0WR59|Y5020_ARATH (e_value=0.0) Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2;; (*TAIR) AT5G10020.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr5:3133514-3136949 FORWARD LENGTH=1048;; (*ITAG) Solyc04g054200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51083393-51089834 transcript_region:SL2.40ch04:51083393..51089834+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00030689g0008.1 protein AED:0.00 eAED:0.00 QI:133|1|0.5|1|1|1|2|0|355; (*GB) gi|225437553|ref|XP_002276165.1| (e_value=0.0) PREDICTED: probable dimethyladenosine transferase-like [Vitis vinifera];; (*SWP) sp|Q9D0D4|DIM1_MOUSE (e_value=2e-127) Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1;; (*TAIR) AT2G47420.1 (e_value=2e-178) | Symbols: | Ribosomal RNA adenine dimethylase family protein | chr2:19457574-19458777 FORWARD LENGTH=353;; (*ITAG) Solyc01g100430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82216295-82219335 transcript_region:SL2.40ch01:82216295..82219335- go_terms:GO:0000154,GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 ***- RSMA_CYAP8); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000154,GO:0006364 NbS00030689g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|0.5|0.33|3|962|162; (*GB) gi|225450605|ref|XP_002277995.1| (e_value=7e-40) PREDICTED: peptide chain release factor 2-like [Vitis vinifera];; (*TAIR) AT1G56350.1 (e_value=8e-36) | Symbols: | Peptide chain release factor 2 | chr1:21094840-21097826 FORWARD LENGTH=482;; (*ITAG) Solyc01g100420.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:82211250-82215734 transcript_region:SL2.40ch01:82211250..82215734+ go_terms:GO:0005737,GO:0006415 functional_description:"Peptide chain release factor 2 (AHRD V1 ***- B6SY98_MAIZE); contains Interpro domain(s) IPR004374 Peptide chain release factor 2 "; GO:0005737,GO:0006415 NbS00030689g0006.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|4|0|81; (*GB) gi|255542882|ref|XP_002512504.1| (e_value=1e-21) peptide chain release factor, putative [Ricinus communis];; (*TAIR) AT1G56350.1 (e_value=8e-19) | Symbols: | Peptide chain release factor 2 | chr1:21094840-21097826 FORWARD LENGTH=482;; (*ITAG) Solyc01g100420.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:82211250-82215734 transcript_region:SL2.40ch01:82211250..82215734+ go_terms:GO:0005737,GO:0006415 functional_description:"Peptide chain release factor 2 (AHRD V1 ***- B6SY98_MAIZE); contains Interpro domain(s) IPR004374 Peptide chain release factor 2 "; GO:0005737,GO:0006415 NbS00013053g0002.1 protein AED:0.29 eAED:0.31 QI:570|0.5|0.66|1|0|0.33|3|0|778; (*GB) gi|147771670|emb|CAN71551.1| (e_value=0.0) hypothetical protein VITISV_030236 [Vitis vinifera];; (*SWP) sp|Q6S5G3|TOC90_ARATH (e_value=0.0) Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1;; (*TAIR) AT5G20300.2 (e_value=0.0) | Symbols: | Avirulence induced gene (AIG1) family protein | chr5:6853544-6856332 REVERSE LENGTH=793;; (*ITAG) Solyc07g007650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2303928-2305559 transcript_region:SL2.40ch07:2303928..2305559+ functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 ***- TOC90_ARATH)"; NbS00011373g0011.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|0|0|2|0|70; (*GB) gi|225451561|ref|XP_002274525.1| (e_value=7e-21) PREDICTED: translocon-associated protein subunit beta isoform 1 [Vitis vinifera];; (*TAIR) AT5G14030.4 (e_value=4e-19) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc02g094440.2.1 (e_value=1e-22) genomic_reference:SL2.40ch02 gene_region:49544950-49547808 transcript_region:SL2.40ch02:49544950..49547808+ go_terms:GO:0016021 functional_description:"Translocon-associated protein subunit beta (AHRD V1 ***- C1C3L8_RANCA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0016021 NbS00011373g0009.1 protein AED:0.01 eAED:0.01 QI:165|1|1|1|0.5|0.66|3|340|796; (*GB) gi|255543675|ref|XP_002512900.1| (e_value=0.0) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=9e-157) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=7e-158) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g009240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00011373g0014.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|595; (*GB) gi|377684868|gb|AFB74453.1| (e_value=0.0) transport inhibitor response protein [Prunus persica];; (*SWP) sp|Q9LPW7|AFB3_ARATH (e_value=0.0) Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1;; (*TAIR) AT1G12820.1 (e_value=0.0) | Symbols: AFB3 | auxin signaling F-box 3 | chr1:4368879-4370780 REVERSE LENGTH=577;; (*ITAG) Solyc09g074520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00011373g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|77 NbS00017745g0005.1 protein AED:0.24 eAED:0.24 QI:36|1|0|1|1|1|2|0|191; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=7e-100) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=7e-84) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=5e-85) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=1e-119) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00017745g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|5|18|355; (*GB) gi|359474375|ref|XP_002266321.2| (e_value=0.0) PREDICTED: probable pectinesterase 68-like [Vitis vinifera];; (*SWP) sp|Q8LPF3|PME68_ARATH (e_value=0.0) Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1;; (*TAIR) AT5G47500.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:19271262-19272845 REVERSE LENGTH=362;; (*ITAG) Solyc08g078640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59566520-59570592 transcript_region:SL2.40ch08:59566520..59570592- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D7MP41_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00035605g0013.1 protein AED:0.12 eAED:0.13 QI:6|0.78|0.66|1|0.64|0.6|15|0|915; (*GB) gi|225439689|ref|XP_002267484.1| (e_value=0.0) PREDICTED: B3 domain-containing protein Os07g0679700-like [Vitis vinifera];; (*SWP) sp|Q5CCK4|VAL2_ARATH (e_value=0.0) B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1;; (*TAIR) AT4G32010.1 (e_value=0.0) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc10g075030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58049176-58060149 transcript_region:SL2.40ch10:58049176..58060149+ go_terms:GO:0003700 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00035605g0011.1 protein AED:0.20 eAED:0.20 QI:107|0.83|0.85|1|1|1|7|430|225; (*GB) gi|224139364|ref|XP_002323076.1| (e_value=9e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|B0JHV3|EFP_MICAN (e_value=3e-67) Elongation factor P OS=Microcystis aeruginosa (strain NIES-843) GN=efp PE=3 SV=1;; (*TAIR) AT3G08740.1 (e_value=4e-100) | Symbols: | elongation factor P (EF-P) family protein | chr3:2654788-2656154 REVERSE LENGTH=236;; (*ITAG) Solyc10g075020.1.1 (e_value=6e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58033470-58038696 transcript_region:SL2.40ch10:58033470..58038696- go_terms:GO:0006414,GO:0005737 functional_description:"Elongation factor P (AHRD V1 ***- B6UC94_MAIZE); contains Interpro domain(s) IPR011768 Translation elongation factor P "; GO:0006414,GO:0005737 NbS00035605g0012.1 protein AED:0.23 eAED:0.23 QI:41|0.75|0.8|1|0.75|0.6|5|0|523; (*GB) gi|255575572|ref|XP_002528686.1| (e_value=0.0) protein kinase atsik, putative [Ricinus communis];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=2e-59) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G08760.1 (e_value=3e-178) | Symbols: ATSIK | Protein kinase superfamily protein | chr3:2658129-2659984 REVERSE LENGTH=557;; (*ITAG) Solyc10g075040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58061308-58063925 transcript_region:SL2.40ch10:58061308..58063925- go_terms:GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00006831g0014.1 protein AED:0.15 eAED:0.15 QI:126|0.71|0.75|1|0.71|0.75|8|0|440; (*GB) gi|225428737|ref|XP_002281988.1| (e_value=6e-156) PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera];; (*SWP) sp|Q0WRX3|SCP40_ARATH (e_value=8e-116) Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=6e-117) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc04g079330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61438925-61441627 transcript_region:SL2.40ch04:61438925..61441627+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** B6SWY3_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00006831g0013.1 protein AED:0.38 eAED:0.38 QI:92|0.55|0.7|1|0.66|0.6|10|20|534; (*GB) gi|57013884|ref|YP_173358.1| (e_value=3e-131) orf297a [Nicotiana tabacum];; (*SWP) sp|O48721|HEM4_ARATH (e_value=4e-61) Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis thaliana GN=UROS PE=2 SV=2;; (*TAIR) AT2G26540.1 (e_value=3e-62) | Symbols: HEMD, UROS, ATUROS, ATDUF3, DUF3 | uroporphyrinogen-III synthase family protein | chr2:11287666-11290224 REVERSE LENGTH=321;; (*ITAG) Solyc04g079320.2.1 (e_value=3e-93) genomic_reference:SL2.40ch04 gene_region:61421967-61437157 transcript_region:SL2.40ch04:61421967..61437157+ go_terms:GO:0004852 functional_description:"Uroporphyrinogen III synthase (AHRD V1 **** B0FMS4_HORVU); contains Interpro domain(s) IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase "; GO:0004852 NbS00006831g0016.1 protein AED:0.34 eAED:0.65 QI:0|0|0|1|0|0|2|0|70; (*GB) gi|242087743|ref|XP_002439704.1| (e_value=2e-16) hypothetical protein SORBIDRAFT_09g018625 [Sorghum bicolor];; (*SWP) sp|P06379|RK2_TOBAC (e_value=2e-14) 50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum GN=rpl2-A PE=3 SV=1; NbS00006831g0015.1 protein AED:0.52 eAED:0.52 QI:0|0|0|1|0|0|2|0|62; (*GB) gi|11465999|ref|NP_054541.1| (e_value=1e-21) ribosomal protein L23 [Nicotiana tabacum];; (*SWP) sp|P06391|RK23_TOBAC (e_value=4e-23) 50S ribosomal protein L23, chloroplastic OS=Nicotiana tabacum GN=rpl23-A PE=1 SV=1;; (*ITAG) ATCG01300.1 (e_value=7e-23) | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=93;; (*ITAG) Solyc12g033090.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22380426-22380925 transcript_region:SL2.40ch12:22380426..22380925+ go_terms:GO:0005840,GO:0000166 functional_description:"50S ribosomal protein L23 (AHRD V1 ***- D1M7Q7_PARAR); contains Interpro domain(s) IPR013025 Ribosomal protein L25/L23 "; GO:0005840,GO:0000166 NbS00044015g0003.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.66|0.5|0.66|3|0|118; (*GB) gi|44917485|gb|AAS49067.1| (e_value=6e-33) At2g07733 [Arabidopsis thaliana];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-21) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=6e-21) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc08g029260.1.1 (e_value=6e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:23684885-23686465 transcript_region:SL2.40ch08:23684885..23686465- functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00044015g0004.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|57013947|ref|YP_173420.1| (e_value=1e-37) hypothetical protein NitaMp078 [Nicotiana tabacum];; (*ITAG) Solyc00g013160.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10688003-10688564 transcript_region:SL2.40ch00:10688003..10688564- functional_description:"Unknown Protein (AHRD V1)"; NbS00008187g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|273; (*GB) gi|224091933|ref|XP_002309405.1| (e_value=8e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=9e-84) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=3e-77) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc10g083170.1.1 (e_value=4e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62364083-62366056 transcript_region:SL2.40ch10:62364083..62366056- go_terms:GO:0018502 functional_description:"2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (AHRD V1 **** LINC_PSEPA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0018502 NbS00004129g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|759; (*GB) gi|225437418|ref|XP_002271146.1| (e_value=0.0) PREDICTED: probable exocyst complex component 6 [Vitis vinifera];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=0.0) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT4G02350.1 (e_value=0.0) | Symbols: SEC15B | exocyst complex component sec15B | chr4:1038157-1040571 FORWARD LENGTH=787;; (*ITAG) Solyc09g075280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62512212-62514626 transcript_region:SL2.40ch09:62512212..62514626- go_terms:GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0000145 NbS00004129g0003.1 protein AED:0.23 eAED:0.26 QI:0|0|0|1|1|1|2|0|119; (*GB) gi|225450691|ref|XP_002283241.1| (e_value=4e-26) PREDICTED: uncharacterized protein LOC100263080 [Vitis vinifera];; (*TAIR) AT1G02816.1 (e_value=2e-25) | Symbols: | Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166;; (*ITAG) Solyc06g009150.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3095005-3095484 transcript_region:SL2.40ch06:3095005..3095484- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00004129g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|255564216|ref|XP_002523105.1| (e_value=7e-54) sec15, putative [Ricinus communis];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=2e-28) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT4G02350.1 (e_value=6e-48) | Symbols: SEC15B | exocyst complex component sec15B | chr4:1038157-1040571 FORWARD LENGTH=787;; (*ITAG) Solyc09g075280.1.1 (e_value=2e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62512212-62514626 transcript_region:SL2.40ch09:62512212..62514626- go_terms:GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0000145 NbS00007697g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|379056254|dbj|BAL68167.1| (e_value=1e-82) ethylene response factor #116 [Nicotiana tabacum];; (*SWP) sp|Q94ID6|ERF81_ARATH (e_value=1e-36) Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1;; (*TAIR) AT1G28360.1 (e_value=8e-38) | Symbols: ERF12, ATERF12 | ERF domain protein 12 | chr1:9951934-9952503 FORWARD LENGTH=189;; (*ITAG) Solyc02g077840.1.1 (e_value=8e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37265510-37265974 transcript_region:SL2.40ch02:37265510..37265974- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 **** C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00007697g0003.1 protein AED:0.23 eAED:0.25 QI:177|1|0.87|1|0.42|0.5|8|765|541; (*GB) gi|111183161|gb|ABH07898.1| (e_value=0.0) leucine-rich repeat family protein [Solanum lycopersicum];; (*SWP) sp|Q9ZQQ7|Y2144_ARATH (e_value=4e-30) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1;; (*TAIR) AT1G28340.1 (e_value=0.0) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc02g077850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37272195-37278625 transcript_region:SL2.40ch02:37272195..37278625- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00051095g0003.1 protein AED:0.35 eAED:0.35 QI:493|0.75|1|1|0.5|0.8|5|273|145; (*GB) gi|316890758|gb|ADU56825.1| (e_value=5e-48) MADS-box protein TM3 subfamily [Coffea arabica];; (*SWP) sp|O82743|AGL19_ARATH (e_value=5e-44) Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1;; (*TAIR) AT4G22950.1 (e_value=4e-45) | Symbols: AGL19, GL19 | AGAMOUS-like 19 | chr4:12023946-12027421 REVERSE LENGTH=219;; (*ITAG) Solyc08g080100.2.1 (e_value=6e-65) genomic_reference:SL2.40ch08 gene_region:60586947-60598079 transcript_region:SL2.40ch08:60586947..60598079- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00029524g0001.1 protein AED:0.45 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|340; (*GB) gi|225424518|ref|XP_002281810.1| (e_value=7e-89) PREDICTED: uncharacterized protein LOC100247334 [Vitis vinifera];; (*ITAG) Solyc10g051090.1.1 (e_value=7e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00029524g0009.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0.5|2|0|110; (*ITAG) Solyc01g017760.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029524g0010.1 protein AED:0.56 eAED:0.66 QI:0|0|0|0.33|0.5|0.66|3|0|115 NbS00029524g0008.1 protein AED:0.17 eAED:0.17 QI:131|0.92|0.93|1|0.64|0.73|15|333|634; (*GB) gi|225428568|ref|XP_002284662.1| (e_value=3e-168) PREDICTED: protein TIC 62, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q8SKU2|TIC62_PEA (e_value=3e-144) Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2;; (*TAIR) AT3G18890.1 (e_value=2e-141) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:6511169-6514729 FORWARD LENGTH=641;; (*ITAG) Solyc10g051110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46996626-47003804 transcript_region:SL2.40ch10:46996626..47003804- go_terms:GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 *--- B0CAN3_ACAM1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00046696g0004.1 protein AED:0.05 eAED:0.05 QI:564|1|1|1|0.87|0.77|9|285|471; (*GB) gi|37651177|dbj|BAC98948.1| (e_value=0.0) AUX1-like auxin influx carrier protein [Pisum sativum];; (*SWP) sp|Q9FEL7|LAX2_MEDTR (e_value=0.0) Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G38120.1 (e_value=0.0) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485;; (*ITAG) Solyc10g076790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59070137-59074683 transcript_region:SL2.40ch10:59070137..59074683- go_terms:GO:0010328,GO:0010011 functional_description:"Auxin transporter-like protein 1 (AHRD V1 **** B6U1Y3_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0010328,GO:0010011 NbS00017902g0011.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|3|0|609; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00017902g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=8e-70) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|Q9VUV9|U520_DROME (e_value=5e-22) Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4;; (*TAIR) AT1G20960.2 (e_value=8e-56) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=1e-76) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00017902g0002.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|255555253|ref|XP_002518663.1| (e_value=9e-35) U520, putative [Ricinus communis];; (*SWP) sp|Q9VUV9|U520_DROME (e_value=1e-21) Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4;; (*TAIR) AT1G20960.2 (e_value=3e-33) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=4e-42) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00017902g0014.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|3|0|783; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00017902g0018.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.8|0|0|5|0|491; (*GB) gi|224055319|ref|XP_002298478.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RE70|INT3_PONAB (e_value=1e-72) Integrator complex subunit 3 OS=Pongo abelii GN=INTS3 PE=2 SV=1;; (*TAIR) AT4G14590.1 (e_value=1e-148) | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962 FORWARD LENGTH=508;; (*ITAG) Solyc06g071630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40506198-40507703 transcript_region:SL2.40ch06:40506198..40507703- functional_description:"Integrator complex subunit 3 homolog (AHRD V1 ***- INT3_DROMO); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00021280g0101.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|432 NbS00014671g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|77; (*ITAG) Solyc01g106700.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:86228943-86229953 transcript_region:SL2.40ch01:86228943..86229953+ go_terms:GO:0017075 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q75V01_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00014671g0001.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.57|1|1|7|0|379 NbS00019096g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|255584253|ref|XP_002532864.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q3V050|S47A2_MOUSE (e_value=3e-60) Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1;; (*TAIR) AT2G38510.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr2:16123985-16125445 FORWARD LENGTH=486;; (*ITAG) Solyc09g018070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:12740053-12741453 transcript_region:SL2.40ch09:12740053..12741453- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00019096g0002.1 protein AED:0.11 eAED:0.11 QI:537|0.57|0.5|1|1|1|8|0|520; (*GB) gi|297735552|emb|CBI18046.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=0.0) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=0.0) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc09g018030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:12634493-12639862 transcript_region:SL2.40ch09:12634493..12639862- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA22_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00019096g0015.1 protein AED:0.11 eAED:0.32 QI:246|1|0.5|1|0|0|2|340|41; (*SWP) sp|Q42952|NLTP1_TOBAC (e_value=7e-16) Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1; NbS00019096g0017.1 protein AED:0.37 eAED:0.41 QI:0|0.5|0.42|0.71|1|1|7|0|273; (*GB) gi|225439671|ref|XP_002270753.1| (e_value=2e-124) PREDICTED: serine/threonine-protein kinase HT1-like [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-49) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G01850.1 (e_value=2e-118) | Symbols: | Protein kinase superfamily protein | chr5:332829-334180 FORWARD LENGTH=333;; (*ITAG) Solyc09g018060.2.1 (e_value=2e-134) genomic_reference:SL2.40ch09 gene_region:12708472-12715748 transcript_region:SL2.40ch09:12708472..12715748- go_terms:GO:0030544,GO:0050321,GO:0005547,GO:0000287,GO:0005524,GO:0005176,GO:0005251,GO:0008094,GO:0042803,GO:0050681,GO:0031625,GO:0004716,GO:0015271,GO:0005017,GO:0003779,GO:0005128 functional_description:"Receptor tyrosine-protein kinase erbB-4 (AHRD V1 **** ERBB4_RAT); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0030544,GO:0050321,GO:0005547,GO:0000287,GO:0005524,GO:0005176,GO:0005251,GO:0008094,GO:0042803,GO:0050681,GO:0031625,GO:0004716,GO:0015271,GO:0005017,GO:0003779,GO:0005128 NbS00019096g0009.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|356509076|ref|XP_003523278.1| (e_value=1e-21) PREDICTED: RING-H2 finger protein ATL72-like [Glycine max];; (*ITAG) Solyc06g049030.2.1 (e_value=8e-22) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019096g0019.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|226; (*GB) gi|94962951|gb|ABF48653.1| (e_value=3e-100) expansin precursor [Vasconcellea cundinamarcensis];; (*SWP) sp|O80622|EXP15_ARATH (e_value=7e-93) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT1G69530.3 (e_value=7e-94) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143200 FORWARD LENGTH=275;; (*ITAG) Solyc09g018020.2.1 (e_value=2e-110) genomic_reference:SL2.40ch09 gene_region:12631916-12633843 transcript_region:SL2.40ch09:12631916..12633843+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- A5H0F8_CARCN); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00019299g0007.1 protein AED:0.10 eAED:0.10 QI:188|1|0.75|1|1|1|4|0|491; (*GB) gi|255565350|ref|XP_002523666.1| (e_value=1e-108) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G53645.1 (e_value=3e-92) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:20026434-20028587 REVERSE LENGTH=523;; (*ITAG) Solyc01g098030.2.1 (e_value=2e-177) genomic_reference:SL2.40ch01 gene_region:80404001-80408717 transcript_region:SL2.40ch01:80404001..80408717+ functional_description:"Contains similarity to RNA-binding protein from Arabidopsis thaliana gi|2129727 and contains RNA recognition PF|00076 domain (AHRD V1 *-*- Q8LA02_ARATH)"; NbS00019299g0006.1 protein AED:0.03 eAED:0.03 QI:174|1|0.5|1|1|1|2|0|329; (*GB) gi|224131386|ref|XP_002328526.1| (e_value=3e-164) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05100.1 (e_value=2e-156) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:1424155-1425667 FORWARD LENGTH=336;; (*ITAG) Solyc01g098040.2.1 (e_value=8e-178) genomic_reference:SL2.40ch01 gene_region:80409336-80411929 transcript_region:SL2.40ch01:80409336..80411929- functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D5C2M0_NITHN); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00040380g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|546; (*GB) gi|296083331|emb|CBI22967.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3E8Z8|PME28_ARATH (e_value=0.0) Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1;; (*TAIR) AT5G27870.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:9878991-9881806 REVERSE LENGTH=732;; (*ITAG) Solyc05g054360.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63425512-63429411 transcript_region:SL2.40ch05:63425512..63429411- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q4G2Z0_TOBAC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00022869g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|180|934; (*GB) gi|356546868|ref|XP_003541844.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100809181, partial [Glycine max];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=6e-45) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=1e-47) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc07g063020.1.1 (e_value=7e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62847937-62851197 transcript_region:SL2.40ch07:62847937..62851197+ go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *-*- Q4KR07_SOLPE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00022869g0011.1 protein AED:0.23 eAED:0.23 QI:185|0.66|0.5|1|1|1|4|312|267; (*GB) gi|225461498|ref|XP_002285093.1| (e_value=5e-137) PREDICTED: 3-hydroxybutyryl-CoA dehydrogenase [Vitis vinifera];; (*SWP) sp|Q45223|HBD_BRAJA (e_value=2e-87) 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum (strain USDA 110) GN=hbdA PE=3 SV=1;; (*TAIR) AT3G15290.1 (e_value=2e-131) | Symbols: | 3-hydroxyacyl-CoA dehydrogenase family protein | chr3:5145054-5146613 FORWARD LENGTH=294;; (*ITAG) Solyc07g063010.2.1 (e_value=3e-163) genomic_reference:SL2.40ch07 gene_region:62844553-62847679 transcript_region:SL2.40ch07:62844553..62847679+ go_terms:GO:0042803 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 **-- FADB_ACIBC); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0042803 NbS00010637g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|3|0|464; (*GB) gi|356600304|gb|AET22503.1| (e_value=2e-35) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-31) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT1G58410.1 (e_value=1e-20) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21701286-21704255 REVERSE LENGTH=899;; (*ITAG) Solyc12g017800.1.1 (e_value=8e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7412896-7415774 transcript_region:SL2.40ch12:7412896..7415774+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00010637g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|140; (*GB) gi|356600304|gb|AET22503.1| (e_value=1e-14) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=6e-12) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc11g006630.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1237304-1240179 transcript_region:SL2.40ch11:1237304..1240179+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00010637g0012.1 protein AED:0.26 eAED:0.26 QI:211|0.83|0.78|1|0.83|0.78|19|278|655; (*GB) gi|187942096|emb|CAP57998.1| (e_value=0.0) putative quinolinate phosphoribosyltransferase2 [Nicotiana glauca];; (*SWP) sp|P77938|NADC_RHORU (e_value=3e-53) Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1;; (*TAIR) AT2G01350.1 (e_value=1e-170) | Symbols: QPT | quinolinate phoshoribosyltransferase | chr2:165332-167209 REVERSE LENGTH=348;; (*ITAG) Solyc05g008180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2571445-2575572 transcript_region:SL2.40ch05:2571445..2575572+ go_terms:GO:0004514,GO:0042803 functional_description:"Nicotinate-nucleotide pyrophosphorylase (AHRD V1 **** B9SJ41_RICCO); contains Interpro domain(s) IPR004393 Nicotinate-nucleotide pyrophosphorylase "; GO:0004514,GO:0042803 NbS00010637g0010.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.14|1|1|7|0|156 NbS00038671g0001.1 protein AED:0.21 eAED:0.21 QI:237|0.66|0.76|0.92|1|1|13|191|715; (*GB) gi|225449124|ref|XP_002274888.1| (e_value=2e-165) PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera];; (*SWP) sp|Q9ZPV5|NOC2L_ARATH (e_value=7e-76) Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2;; (*TAIR) AT3G55510.1 (e_value=3e-113) | Symbols: RBL | Noc2p family | chr3:20579232-20582124 FORWARD LENGTH=594;; (*ITAG) Solyc05g023710.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29024158-29035186 transcript_region:SL2.40ch05:29024158..29035186+ functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; NbS00054552g0004.1 protein AED:0.13 eAED:0.13 QI:85|0.5|0.6|1|1|1|5|0|396; (*GB) gi|359483589|ref|XP_003632983.1| (e_value=9e-134) PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=5e-113) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=4e-114) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071360.2.1 (e_value=2e-173) genomic_reference:SL2.40ch02 gene_region:35415823-35419393 transcript_region:SL2.40ch02:35415823..35419393- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00054552g0008.1 protein AED:0.09 eAED:0.09 QI:162|0.83|0.69|1|0.83|0.84|13|0|1232; (*GB) gi|110226562|gb|ABG56413.1| (e_value=0.0) MDR-like ABC transporter [Catharanthus roseus];; (*SWP) sp|Q9M0M2|AB9B_ARATH (e_value=0.0) ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=2;; (*TAIR) AT4G18050.1 (e_value=0.0) | Symbols: PGP9 | P-glycoprotein 9 | chr4:10022205-10027280 FORWARD LENGTH=1236;; (*ITAG) Solyc02g071350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35409422-35415788 transcript_region:SL2.40ch02:35409422..35415788+ go_terms:GO:0004409,GO:0015459,GO:0008097,GO:0008514,GO:0046978,GO:0015232,GO:0019905,GO:0005524,GO:0005324,GO:0003697,GO:0046979,GO:0034634 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--* MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0004409,GO:0015459,GO:0008097,GO:0008514,GO:0046978,GO:0015232,GO:0019905,GO:0005524,GO:0005324,GO:0003697,GO:0046979,GO:0034634 NbS00054552g0009.1 protein AED:0.13 eAED:0.13 QI:169|0.88|0.9|1|0.88|0.9|10|444|354; (*GB) gi|224114387|ref|XP_002316744.1| (e_value=3e-166) predicted protein [Populus trichocarpa];; (*TAIR) AT4G18060.1 (e_value=8e-167) | Symbols: | SH3 domain-containing protein | chr4:10027668-10029662 REVERSE LENGTH=351;; (*ITAG) Solyc02g071330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35391296-35396537 transcript_region:SL2.40ch02:35391296..35396537+ go_terms:GO:0030276 functional_description:"SH3 domain-containing guanine exchange factor (AHRD V1 *--- SGEF_HUMAN); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00005280g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|1786136|dbj|BAA19111.1| (e_value=1e-118) PEThy;ZPT2-6 [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=1e-33) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT5G04390.1 (e_value=6e-39) | Symbols: | C2H2-type zinc finger family protein | chr5:1239166-1240254 FORWARD LENGTH=362;; (*ITAG) Solyc05g055500.1.1 (e_value=6e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64268900-64269988 transcript_region:SL2.40ch05:64268900..64269988- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00005280g0023.1 protein AED:0.15 eAED:0.17 QI:0|0.66|0.42|1|1|1|7|0|433; (*GB) gi|357145013|ref|XP_003573492.1| (e_value=3e-99) PREDICTED: monocopper oxidase-like protein SKU5-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=6e-60) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT1G76160.1 (e_value=3e-77) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc11g008030.1.1 (e_value=7e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2243066-2250910 transcript_region:SL2.40ch11:2243066..2250910+ go_terms:GO:0055114 functional_description:"Laccase-16 (AHRD V1 **-- LAC16_ARATH); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00005280g0022.1 protein AED:0.19 eAED:0.19 QI:176|1|0.8|1|0.25|0.6|5|0|189; (*GB) gi|255584090|ref|XP_002532788.1| (e_value=5e-93) protein with unknown function [Ricinus communis];; (*SWP) sp|O49841|RAC2A_ARATH (e_value=5e-92) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=4e-93) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc11g008020.1.1 (e_value=4e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2238213-2241626 transcript_region:SL2.40ch11:2238213..2241626+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00005280g0013.1 protein AED:0.28 eAED:0.37 QI:0|0|0|0.25|1|1|4|0|85 NbS00005280g0005.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|255550514|ref|XP_002516307.1| (e_value=2e-132) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G21050.1 (e_value=2e-114) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:7147890-7148957 FORWARD LENGTH=355;; (*ITAG) Solyc11g008070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2269773-2270795 transcript_region:SL2.40ch11:2269773..2270795- functional_description:"Protein FAM126B (AHRD V1 *--- F126B_PONAB); contains Interpro domain(s) IPR018619 Hyccin "; NbS00005280g0010.1 protein AED:0.16 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|265; (*GB) gi|356576380|ref|XP_003556310.1| (e_value=7e-28) PREDICTED: uncharacterized protein LOC100812373 [Glycine max];; (*TAIR) AT5G22930.1 (e_value=1e-22) | Symbols: | Protein of unknown function (DUF1635) | chr5:7668229-7669315 REVERSE LENGTH=238;; (*ITAG) Solyc11g008080.1.1 (e_value=5e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2273841-2275000 transcript_region:SL2.40ch11:2273841..2275000- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00045482g0003.1 protein AED:0.10 eAED:0.10 QI:272|1|1|1|0.83|0.71|7|683|365; (*GB) gi|350538087|ref|NP_001233814.1| (e_value=0.0) gamma-tocopherol methyltransferase [Solanum lycopersicum];; (*SWP) sp|Q6ZIK0|GTOMC_ORYSJ (e_value=8e-150) Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1;; (*TAIR) AT1G64970.1 (e_value=6e-145) | Symbols: G-TMT, TMT1, VTE4 | gamma-tocopherol methyltransferase | chr1:24134337-24135993 REVERSE LENGTH=348;; (*ITAG) Solyc08g076360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57497311-57501540 transcript_region:SL2.40ch08:57497311..57501540- go_terms:GO:0050342 functional_description:"Gamma-tocopherol methyltransferase (AHRD V1 **** Q1PBH9_SOLLC); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0050342 NbS00016528g0002.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|2346972|dbj|BAA21920.1| (e_value=1e-31) ZPT2-11 [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=1e-13) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT2G28200.1 (e_value=1e-14) | Symbols: | C2H2-type zinc finger family protein | chr2:12024321-12025181 FORWARD LENGTH=286;; (*ITAG) Solyc09g008440.1.1 (e_value=9e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1894187-1895119 transcript_region:SL2.40ch09:1894187..1895119+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LWQ5_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00056676g0007.1 protein AED:0.01 eAED:0.01 QI:707|1|1|1|1|1|2|559|130; (*GB) gi|147853933|emb|CAN79550.1| (e_value=2e-67) hypothetical protein VITISV_027677 [Vitis vinifera];; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=1e-30) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G36750.1 (e_value=3e-65) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc01g109420.2.1 (e_value=1e-75) genomic_reference:SL2.40ch01 gene_region:88142029-88144096 transcript_region:SL2.40ch01:88142029..88144096- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00056676g0002.1 protein AED:0.35 eAED:0.35 QI:0|0.81|0.91|1|0.90|0.83|12|267|372; (*GB) gi|225428556|ref|XP_002284627.1| (e_value=0.0) PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Vitis vinifera];; (*SWP) sp|Q6NYS8|OST48_DANRE (e_value=4e-90) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Danio rerio GN=ddost PE=2 SV=2;; (*TAIR) AT5G66680.1 (e_value=2e-170) | Symbols: DGL1 | dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein | chr5:26617840-26620581 REVERSE LENGTH=437;; (*ITAG) Solyc01g109410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88132748-88140649 transcript_region:SL2.40ch01:88132748..88140649- go_terms:GO:0005515 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (AHRD V1 ***- C1C2G2_9MAXI); contains Interpro domain(s) IPR005013 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit "; GO:0005515 NbS00027039g0001.1 protein AED:0.09 eAED:0.47 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|57013967|ref|YP_173439.1| (e_value=2e-36) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00031124g0007.1 protein AED:0.18 eAED:0.18 QI:233|0.75|0.6|1|1|0.8|5|0|235; (*GB) gi|302701824|gb|ADL61840.1| (e_value=2e-133) delta 1-pyrroline-5-carboxylate synthetase [Nicotiana tabacum];; (*SWP) sp|Q96480|P5CS_SOLLC (e_value=7e-130) Delta-1-pyrroline-5-carboxylate synthase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1;; (*TAIR) AT2G39800.3 (e_value=2e-104) | Symbols: P5CS1 | delta1-pyrroline-5-carboxylate synthase 1 | chr2:16598516-16602939 REVERSE LENGTH=714;; (*ITAG) Solyc08g043170.2.1 (e_value=7e-131) genomic_reference:SL2.40ch08 gene_region:30051615-30064445 transcript_region:SL2.40ch08:30051615..30064445- go_terms:GO:0004349,GO:0017084 functional_description:"Gamma-glutamyl phosphate reductase (AHRD V1 ***- D3TQ43_GLOMM); contains Interpro domain(s) IPR005766 Delta l-pyrroline-5-carboxylate synthetase "; GO:0004349,GO:0017084 NbS00031124g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|1|1|14|257|459; (*GB) gi|302701824|gb|ADL61840.1| (e_value=0.0) delta 1-pyrroline-5-carboxylate synthetase [Nicotiana tabacum];; (*SWP) sp|Q96480|P5CS_SOLLC (e_value=0.0) Delta-1-pyrroline-5-carboxylate synthase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1;; (*TAIR) AT3G55610.1 (e_value=0.0) | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate synthase 2 | chr3:20624278-20628989 REVERSE LENGTH=726;; (*ITAG) Solyc08g043170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:30051615-30064445 transcript_region:SL2.40ch08:30051615..30064445- go_terms:GO:0004349,GO:0017084 functional_description:"Gamma-glutamyl phosphate reductase (AHRD V1 ***- D3TQ43_GLOMM); contains Interpro domain(s) IPR005766 Delta l-pyrroline-5-carboxylate synthetase "; GO:0004349,GO:0017084 NbS00014206g0003.1 protein AED:0.01 eAED:0.05 QI:0|1|0.5|1|0|0|2|313|120; (*GB) gi|388494196|gb|AFK35164.1| (e_value=9e-37) unknown [Medicago truncatula];; (*TAIR) AT2G37870.1 (e_value=2e-35) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:15859280-15859723 FORWARD LENGTH=115;; (*ITAG) Solyc05g041140.2.1 (e_value=3e-21) genomic_reference:SL2.40ch05 gene_region:48734343-48734909 transcript_region:SL2.40ch05:48734343..48734909+ go_terms:GO:0008289 functional_description:"Protease inhibitor/seed storage/lipid transfer protein family protein (AHRD V1 **** D7LUP2_ARALY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00014206g0006.1 protein AED:0.29 eAED:0.29 QI:46|0.8|0.5|0.83|0.6|0.66|6|0|345; (*GB) gi|225424520|ref|XP_002281819.1| (e_value=1e-59) PREDICTED: uncharacterized protein LOC100242197 [Vitis vinifera];; (*TAIR) AT2G01990.1 (e_value=2e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:465197-466497 REVERSE LENGTH=213;; (*ITAG) Solyc01g005010.2.1 (e_value=4e-104) genomic_reference:SL2.40ch01 gene_region:23087-26021 transcript_region:SL2.40ch01:23087..26021+ functional_description:"Protein XRI1 (AHRD V1 *-*- XRI1_ARATH)"; NbS00023628g0003.1 protein AED:0.22 eAED:0.23 QI:0|0.71|0.75|0.87|0.14|0.25|8|0|261; (*GB) gi|225463552|ref|XP_002267156.1| (e_value=5e-137) PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera];; (*SWP) sp|Q8W1P0|CSN6B_ARATH (e_value=1e-125) COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2;; (*TAIR) AT4G26430.1 (e_value=1e-126) | Symbols: CSN6B | COP9 signalosome subunit 6B | chr4:13355229-13357326 FORWARD LENGTH=317;; (*ITAG) Solyc10g005660.2.1 (e_value=1e-140) genomic_reference:SL2.40ch10 gene_region:536061-541079 transcript_region:SL2.40ch10:536061..541079+ go_terms:GO:0005515 functional_description:"COP9 signalosome subunit 6 (AHRD V1 ***- Q2A0N7_ORYSA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00001016g0005.1 protein AED:0.26 eAED:0.34 QI:0|0.5|0|1|0.5|0.33|3|0|436; (*GB) gi|356508732|ref|XP_003523108.1| (e_value=0.0) PREDICTED: transmembrane anterior posterior transformation protein 1 homolog isoform 1 [Glycine max];; (*SWP) sp|F4HVJ3|POD1_ARATH (e_value=1e-170) Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1;; (*TAIR) AT1G67960.1 (e_value=1e-171) | Symbols: | CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE LENGTH=624;; (*ITAG) Solyc06g051430.2.1 (e_value=1e-123) genomic_reference:SL2.40ch06 gene_region:31337737-31342781 transcript_region:SL2.40ch06:31337737..31342781+ functional_description:"Transmembrane anterior posterior transformation protein 1 homolog (AHRD V1 *--- TAPT1_CHICK); contains Interpro domain(s) IPR008010 Membrane protein,Tapt1/CMV receptor "; NbS00001016g0107.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|3|0|356 NbS00023444g0014.1 protein AED:0.29 eAED:0.31 QI:356|0.75|0.77|1|1|1|9|0|410; (*GB) gi|225439047|ref|XP_002265169.1| (e_value=0.0) PREDICTED: ethanolamine-phosphate cytidylyltransferase isoform 1 [Vitis vinifera];; (*SWP) sp|Q55BZ4|PCY2_DICDI (e_value=4e-104) Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1;; (*TAIR) AT2G38670.1 (e_value=0.0) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc10g074700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57632239-57644832 transcript_region:SL2.40ch10:57632239..57644832+ go_terms:GO:0009058 functional_description:"Bifunctional protein hldE (AHRD V1 *-*- HLDE_ERWCT); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0009058 NbS00023444g0018.1 protein AED:0.37 eAED:0.37 QI:257|1|1|1|0.92|0.93|15|624|439; (*GB) gi|359480951|ref|XP_002264842.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243295 isoform 1 [Vitis vinifera];; (*TAIR) AT5G01010.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:1388-4924 REVERSE LENGTH=438;; (*ITAG) Solyc10g074690.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57604583-57618716 transcript_region:SL2.40ch10:57604583..57618716- go_terms:GO:0004867 functional_description:"MRNA complete cds clone RAFL23-01-J08 (AHRD V1 **-- Q67ZF4_ARATH); contains Interpro domain(s) IPR009038 GOLD "; GO:0004867 NbS00023444g0017.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|386; (*GB) gi|224116290|ref|XP_002317261.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=1e-21) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=9e-23) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc11g013890.1.1 (e_value=1e-92) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:7311684-7312835 transcript_region:SL2.40ch11:7311684..7312835+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00039907g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.77|0.8|1|0.77|0.8|10|396|629; (*GB) gi|13536981|dbj|BAB40709.1| (e_value=0.0) BY-2 kinesin-like protein 5 [Nicotiana tabacum];; (*SWP) sp|Q9BVG8|KIFC3_HUMAN (e_value=2e-63) Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4;; (*TAIR) AT5G27950.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9984774-9987493 FORWARD LENGTH=625;; (*ITAG) Solyc01g098080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80437575-80440877 transcript_region:SL2.40ch01:80437575..80440877- go_terms:GO:0007018 functional_description:"BY-inesin-like protein 5 (AHRD V1 ***- Q9AVP5_TOBAC); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00019571g0010.1 protein AED:0.03 eAED:0.03 QI:669|0.8|0.66|1|1|1|6|362|368; (*GB) gi|255568291|ref|XP_002525120.1| (e_value=8e-32) hypothetical protein RCOM_0553590 [Ricinus communis];; (*TAIR) AT2G31130.1 (e_value=3e-27) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc12g010830.1.1 (e_value=5e-160) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3765641-3768837 transcript_region:SL2.40ch12:3765641..3768837- functional_description:"Unknown Protein (AHRD V1)"; NbS00019571g0007.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0|0.75|1|1|4|0|508; (*GB) gi|147802324|emb|CAN61650.1| (e_value=2e-17) hypothetical protein VITISV_027795 [Vitis vinifera];; (*ITAG) Solyc12g010820.1.1 (e_value=1e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3763483-3765054 transcript_region:SL2.40ch12:3763483..3765054- functional_description:"Group 3 late embryogenesis abundant protein (AHRD V1 *--- Q2N1E0_PHAVU); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00005847g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|7|468|620; (*GB) gi|225462223|ref|XP_002269838.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257731 [Vitis vinifera];; (*SWP) sp|Q91W34|CP058_MOUSE (e_value=2e-38) UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT3G45890.1 (e_value=0.0) | Symbols: RUS1 | Protein of unknown function, DUF647 | chr3:16871697-16874100 FORWARD LENGTH=608;; (*ITAG) Solyc08g005570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:424194-430101 transcript_region:SL2.40ch08:424194..430101+ go_terms:GO:0032776 functional_description:"DUF647 domain-containing protein (AHRD V1 *--- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0032776 NbS00005847g0006.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|0.5|0.66|3|0|220; (*GB) gi|337255727|gb|AEI61930.1| (e_value=6e-60) carotenoid cleavage dioxygenase 4 [Nicotiana tabacum];; (*SWP) sp|O49675|CCD4_ARATH (e_value=6e-40) Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1;; (*TAIR) AT4G19170.1 (e_value=5e-41) | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481835-10483622 FORWARD LENGTH=595;; (*ITAG) Solyc08g075490.2.1 (e_value=1e-52) genomic_reference:SL2.40ch08 gene_region:56809898-56812517 transcript_region:SL2.40ch08:56809898..56812517- go_terms:GO:0005515 functional_description:"Carotenoid cleavage dioxygenase 4B"; GO:0005515 NbS00005847g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|181; (*GB) gi|164551336|gb|ABY60887.1| (e_value=1e-48) carotenoid cleavage dioxygenase 4 [Osmanthus fragrans];; (*SWP) sp|O49675|CCD4_ARATH (e_value=2e-44) Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1;; (*TAIR) AT4G19170.1 (e_value=1e-45) | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481835-10483622 FORWARD LENGTH=595;; (*ITAG) Solyc08g075480.2.1 (e_value=1e-50) genomic_reference:SL2.40ch08 gene_region:56793153-56795023 transcript_region:SL2.40ch08:56793153..56795023- go_terms:GO:0005515 functional_description:"Carotenoid cleavage dioxygenase 4A"; GO:0005515 NbS00020790g0016.1 protein AED:0.07 eAED:0.07 QI:106|0.6|0.5|1|0.6|0.33|6|348|574; (*GB) gi|225427896|ref|XP_002276670.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253759 [Vitis vinifera];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc01g111100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00020790g0011.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|1|1|3|225|333; (*GB) gi|309385615|gb|ADO66675.1| (e_value=2e-156) X intrinsic protein [Nicotiana sylvestris];; (*SWP) sp|Q39196|PIP14_ARATH (e_value=6e-17) Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1;; (*TAIR) AT4G00430.1 (e_value=4e-18) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc10g054800.1.1 (e_value=2e-151) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:51426730-51427883 transcript_region:SL2.40ch10:51426730..51427883- go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 ***- D3TQR7_GLOMM); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0016020 NbS00020790g0017.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|0.5|0.33|3|675|255; (*GB) gi|224080584|ref|XP_002306170.1| (e_value=4e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT23|BH121_ARATH (e_value=4e-66) Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1;; (*TAIR) AT3G19860.1 (e_value=2e-68) | Symbols: bHLH121 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6904579-6905863 FORWARD LENGTH=284;; (*ITAG) Solyc01g111130.2.1 (e_value=5e-115) genomic_reference:SL2.40ch01 gene_region:89262003-89265946 transcript_region:SL2.40ch01:89262003..89265946- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00020790g0010.1 protein AED:0.33 eAED:0.33 QI:0|1|0.33|1|1|0.66|3|0|181; (*GB) gi|255543907|ref|XP_002513016.1| (e_value=7e-76) YEATS domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q755P0|AF9_ASHGO (e_value=8e-27) Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1;; (*TAIR) AT5G45600.1 (e_value=2e-74) | Symbols: GAS41, TAF14B | YEATS family protein | chr5:18488059-18489666 FORWARD LENGTH=268;; (*ITAG) Solyc04g077290.1.1 (e_value=2e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59848664-59849488 transcript_region:SL2.40ch04:59848664..59849488- go_terms:GO:0005515,GO:0004402 functional_description:"YEATS domain-containing protein (AHRD V1 **-- C1EEG0_9CHLO); contains Interpro domain(s) IPR005033 YEATS "; GO:0005515,GO:0004402 NbS00007511g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|655; (*GB) gi|225432035|ref|XP_002273694.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Vitis vinifera];; (*SWP) sp|Q9M302|PP270_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1;; (*TAIR) AT3G48810.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18097048-18099027 FORWARD LENGTH=659;; (*ITAG) Solyc08g076680.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57776442-57778604 transcript_region:SL2.40ch08:57776442..57778604- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007511g0005.1 protein AED:0.26 eAED:0.26 QI:0|0.62|0.55|0.88|1|1|9|0|1084; (*GB) gi|359477631|ref|XP_002274485.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera];; (*SWP) sp|Q9SQV1|RH40_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1;; (*TAIR) AT3G06480.1 (e_value=0.0) | Symbols: | DEAD box RNA helicase family protein | chr3:1985697-1989666 REVERSE LENGTH=1088;; (*ITAG) Solyc01g057760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56514460-56523028 transcript_region:SL2.40ch01:56514460..56523028+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00010957g0006.1 protein AED:0.07 eAED:0.07 QI:80|0.88|0.9|1|0.66|0.7|10|230|340; (*GB) gi|255587056|ref|XP_002534117.1| (e_value=8e-123) endonuclease III, putative [Ricinus communis];; (*SWP) sp|Q2KID2|NTHL1_BOVIN (e_value=6e-73) Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1;; (*TAIR) AT2G31450.2 (e_value=4e-118) | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=377;; (*ITAG) Solyc09g083010.2.1 (e_value=6e-157) genomic_reference:SL2.40ch09 gene_region:64098157-64101137 transcript_region:SL2.40ch09:64098157..64101137- go_terms:GO:0034042,GO:0034043 functional_description:"Endonuclease III-like protein 1 (AHRD V1 **-- B6U0P3_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0034042,GO:0034043 NbS00007225g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.77|0.7|1|0.88|0.8|10|549|960; (*GB) gi|225438408|ref|XP_002275766.1| (e_value=1e-110) PREDICTED: auxilin-related protein 2-like [Vitis vinifera];; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=1e-90) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT4G12770.1 (e_value=8e-92) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:7506736-7511408 REVERSE LENGTH=891;; (*ITAG) Solyc09g018960.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:17739610-17753558 transcript_region:SL2.40ch09:17739610..17753558- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B0Y4B6_ASPFC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00007225g0006.1 protein AED:0.14 eAED:0.14 QI:106|1|1|1|0.6|0.66|6|242|252; (*GB) gi|224129294|ref|XP_002320549.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*TAIR) AT4G12760.1 (e_value=4e-78) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7504876-7506091 FORWARD LENGTH=258;; (*ITAG) Solyc09g018950.2.1 (e_value=6e-149) genomic_reference:SL2.40ch09 gene_region:17734869-17738551 transcript_region:SL2.40ch09:17734869..17738551+ functional_description:"RPA-interacting protein A (AHRD V1 ***- C1BX62_ESOLU)"; NbS00048745g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|57012758|sp|Q40478.1|ERF5_TOBAC (e_value=1e-52) RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NtERF4;; (*SWP) sp|Q40478|ERF5_TOBAC (e_value=3e-54) Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G47230.1 (e_value=3e-20) | Symbols: ERF5, ATERF-5, ATERF5 | ethylene responsive element binding factor 5 | chr5:19180072-19180974 FORWARD LENGTH=300;; (*ITAG) Solyc03g093550.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00048745g0002.1 protein AED:0.23 eAED:0.23 QI:144|0.78|0.8|1|1|1|15|1418|527; (*GB) gi|359490072|ref|XP_002282309.2| (e_value=0.0) PREDICTED: 6-phosphofructokinase 4, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FKG3|K6PF4_ARATH (e_value=0.0) 6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1;; (*TAIR) AT5G61580.1 (e_value=0.0) | Symbols: PFK4 | phosphofructokinase 4 | chr5:24761150-24763827 FORWARD LENGTH=530;; (*ITAG) Solyc03g093520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48317107-48330077 transcript_region:SL2.40ch03:48317107..48330077+ go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MV38_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00023257g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.69|1|0.91|0.92|13|462|1349; (*GB) gi|225462062|ref|XP_002269575.1| (e_value=0.0) PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera];; (*TAIR) AT3G13300.2 (e_value=0.0) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309;; (*ITAG) Solyc07g065950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64749640-64759288 transcript_region:SL2.40ch07:64749640..64759288+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00060899g0005.1 protein AED:0.03 eAED:0.03 QI:82|1|1|1|0.5|0.66|3|11|55 NbS00002662g0010.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|1|1|2|0|171; (*GB) gi|225429822|ref|XP_002280812.1| (e_value=4e-28) PREDICTED: NAC domain-containing protein 100 [Vitis vinifera];; (*ITAG) Solyc08g006020.2.1 (e_value=7e-19) genomic_reference:SL2.40ch08 gene_region:784730-788036 transcript_region:SL2.40ch08:784730..788036+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00002662g0009.1 protein AED:0.37 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|297825401|ref|XP_002880583.1| (e_value=6e-33) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O04017|NAC98_ARATH (e_value=8e-27) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT2G24430.2 (e_value=2e-35) | Symbols: ANAC039 | NAC domain containing protein 38 | chr2:10383517-10386386 REVERSE LENGTH=316;; (*ITAG) Solyc08g074300.2.1 (e_value=6e-31) genomic_reference:SL2.40ch08 gene_region:55577743-55580998 transcript_region:SL2.40ch08:55577743..55580998- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N6B5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00002662g0008.1 protein AED:0.15 eAED:0.15 QI:432|1|1|1|0.84|0.85|14|397|446; (*GB) gi|224115694|ref|XP_002332119.1| (e_value=1e-164) predicted protein [Populus trichocarpa];; (*TAIR) AT4G31340.1 (e_value=3e-144) | Symbols: | myosin heavy chain-related | chr4:15205662-15208950 FORWARD LENGTH=437;; (*ITAG) Solyc08g074290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55567712-55577475 transcript_region:SL2.40ch08:55567712..55577475+ functional_description:"BRI1-KD interacting protein 129 (Fragment) (AHRD V1 *-*- Q761Y5_ORYSJ)"; NbS00002662g0112.1 protein AED:0.17 eAED:0.17 QI:0|0.91|0.76|1|0.75|0.76|13|0|519 NbS00002662g0109.1 protein AED:0.05 eAED:0.05 QI:135|1|1|1|1|1|6|218|249 NbS00014797g0019.1 protein AED:0.23 eAED:0.23 QI:221|0.25|0.4|0.8|0.5|0.4|5|0|288; (*GB) gi|356566421|ref|XP_003551430.1| (e_value=1e-122) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=4e-112) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=3e-113) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc06g083500.2.1 (e_value=1e-147) genomic_reference:SL2.40ch06 gene_region:45194883-45198656 transcript_region:SL2.40ch06:45194883..45198656- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00014797g0002.1 protein AED:0.24 eAED:0.24 QI:305|0.71|0.62|1|0.71|0.62|8|0|393; (*GB) gi|224065330|ref|XP_002301777.1| (e_value=1e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48830.1 (e_value=2e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19800269-19802625 REVERSE LENGTH=511;; (*ITAG) Solyc09g061420.2.1 (e_value=1e-128) genomic_reference:SL2.40ch09 gene_region:54682596-54695544 transcript_region:SL2.40ch09:54682596..54695544- functional_description:"Os02g0515000 protein (Fragment) (AHRD V1 *-*- Q0E0X2_ORYSJ)"; NbS00014797g0020.1 protein AED:0.15 eAED:0.15 QI:628|0.66|0.57|0.85|0.5|0.28|7|0|185; (*GB) gi|350540086|ref|NP_001234382.1| (e_value=8e-49) nuclear GTPase-like [Solanum lycopersicum];; (*SWP) sp|Q21086|GNL3_CAEEL (e_value=8e-24) Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1;; (*TAIR) AT3G07050.1 (e_value=8e-49) | Symbols: | GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582;; (*ITAG) Solyc06g083520.2.1 (e_value=4e-52) genomic_reference:SL2.40ch06 gene_region:45204133-45208934 transcript_region:SL2.40ch06:45204133..45208934+ go_terms:GO:0003723 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B0WF29_CULQU); contains Interpro domain(s) IPR014813 GNL3L/Grn1 putative GTPase "; GO:0003723 NbS00014797g0017.1 protein AED:0.49 eAED:0.56 QI:0|0|0|0.66|0|0|3|0|217; (*GB) gi|20149052|gb|AAM12781.1| (e_value=9e-34) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29510.1 (e_value=1e-19) | Symbols: SAUR68 | SAUR-like auxin-responsive protein family | chr1:10322683-10323114 FORWARD LENGTH=143;; (*ITAG) Solyc04g053020.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50455610-50456056 transcript_region:SL2.40ch04:50455610..50456056- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00034641g0014.1 protein AED:0.09 eAED:0.09 QI:94|0.5|0.77|0.88|0.5|0.55|9|905|399; (*GB) gi|374250715|gb|AEY99980.1| (e_value=3e-135) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9ZV15|CDPKK_ARATH (e_value=4e-124) Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=2 SV=1;; (*TAIR) AT2G38910.1 (e_value=3e-125) | Symbols: CPK20 | calcium-dependent protein kinase 20 | chr2:16245214-16247483 REVERSE LENGTH=583;; (*ITAG) Solyc10g081640.1.1 (e_value=2e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62001043-62005206 transcript_region:SL2.40ch10:62001043..62005206+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 2 (AHRD V1 **** B9H9N5_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00034641g0018.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|0.85|0.75|8|428|425; (*GB) gi|75105380|sp|Q5IH13.1|SPP2_TOBAC (e_value=0.0) RecName: Full=Sucrose-phosphatase 2; Short=NtSPP2;; (*SWP) sp|Q5IH13|SPP2_TOBAC (e_value=0.0) Sucrose-phosphatase 2 OS=Nicotiana tabacum GN=SPP2 PE=2 SV=1;; (*TAIR) AT2G35840.3 (e_value=0.0) | Symbols: | Sucrose-6F-phosphate phosphohydrolase family protein | chr2:15053952-15055776 FORWARD LENGTH=422;; (*ITAG) Solyc10g081660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62014716-62018407 transcript_region:SL2.40ch10:62014716..62018407+ go_terms:GO:0008152,GO:0005986,GO:0016791 functional_description:"Sucrose phosphate phosphatase (AHRD V1 ***- Q5J3N8_ACTCH); contains Interpro domain(s) IPR012847 Sucrose phosphatase, plant and cyanobacteria IPR006380 Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "; GO:0008152,GO:0005986,GO:0016791 NbS00034641g0019.1 protein AED:0.11 eAED:0.11 QI:490|1|1|1|0.91|0.92|13|369|613; (*GB) gi|75159637|sp|Q8S4R4.1|CRTSO_SOLLC (e_value=0.0) RecName: Full=Prolycopene isomerase, chloroplastic; Short=CrtISO; AltName: Full=Carotenoid isomerase; AltName: Full=Protein tangerine; Flags: Precursor;; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=0.0) Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=1 SV=1;; (*TAIR) AT1G06820.1 (e_value=0.0) | Symbols: CRTISO, CCR2 | carotenoid isomerase | chr1:2093145-2096220 REVERSE LENGTH=595;; (*ITAG) Solyc10g081650.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62006972-62011520 transcript_region:SL2.40ch10:62006972..62011520- go_terms:GO:0046608 functional_description:"Carotenoid isomerase, chloroplastic"; GO:0046608 NbS00034641g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|4105784|gb|AAD02549.1| (e_value=4e-89) PGPS/D7 [Petunia x hybrida];; (*ITAG) Solyc10g081670.1.1 (e_value=7e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62020522-62025047 transcript_region:SL2.40ch10:62020522..62025047- go_terms:GO:0030599 functional_description:"PGPS/D7 (AHRD V1 ***- Q9ZNX3_PETHY); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00034641g0020.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|0|0|2|0|171; (*GB) gi|4105784|gb|AAD02549.1| (e_value=4e-28) PGPS/D7 [Petunia x hybrida];; (*ITAG) Solyc10g081670.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62020522-62025047 transcript_region:SL2.40ch10:62020522..62025047- go_terms:GO:0030599 functional_description:"PGPS/D7 (AHRD V1 ***- Q9ZNX3_PETHY); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00033329g0007.1 protein AED:0.06 eAED:0.06 QI:151|0.88|0.88|1|0.70|0.83|18|166|637; (*GB) gi|297814069|ref|XP_002874918.1| (e_value=0.0) poly(ADP-ribose) polymerase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q11207|PARP2_ARATH (e_value=0.0) Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1;; (*TAIR) AT4G02390.1 (e_value=0.0) | Symbols: APP, PARP1, ATPARP1, PP | poly(ADP-ribose) polymerase | chr4:1050104-1053960 FORWARD LENGTH=637;; (*ITAG) Solyc08g074740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56042682-56051168 transcript_region:SL2.40ch08:56042682..56051168- go_terms:GO:0003950 functional_description:"Novel protein similar to vertebrate ADP-ribosyltransferase (NAD+ poly (ADP-ribose) polymerase) (ADPRT) (AHRD V1 **** Q5RHR0_DANRE); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00000582g0003.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|116; (*ITAG) Solyc07g008930.1.1 (e_value=3e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:3935838-3936437 transcript_region:SL2.40ch07:3935838..3936437- functional_description:"Unknown Protein (AHRD V1)"; NbS00000582g0004.1 protein AED:0.23 eAED:0.23 QI:219|0|0.25|1|0|0|4|0|63 NbS00000582g0001.1 protein AED:0.36 eAED:0.50 QI:0|0|0|1|1|1|2|0|103; (*ITAG) Solyc07g008930.1.1 (e_value=5e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:3935838-3936437 transcript_region:SL2.40ch07:3935838..3936437- functional_description:"Unknown Protein (AHRD V1)"; NbS00006876g0008.1 protein AED:0.30 eAED:0.32 QI:116|0.28|0.2|0.93|1|1|15|0|393; (*GB) gi|225434806|ref|XP_002282726.1| (e_value=4e-169) PREDICTED: uncharacterized protein LOC100243231 [Vitis vinifera];; (*TAIR) AT5G59210.1 (e_value=8e-165) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=434;; (*ITAG) Solyc09g055760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00006876g0006.1 protein AED:0.71 eAED:0.71 QI:0|0.5|0|0.66|1|1|3|0|73; (*GB) gi|296088757|emb|CBI38207.3| (e_value=1e-19) unnamed protein product [Vitis vinifera]; NbS00008811g0010.1 protein AED:0.13 eAED:0.15 QI:0|0.6|0.33|1|0.6|0.33|6|0|466; (*GB) gi|225446991|ref|XP_002268472.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Vitis vinifera];; (*SWP) sp|Q9SJ85|Y2474_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2;; (*TAIR) AT2G04740.1 (e_value=0.0) | Symbols: | ankyrin repeat family protein | chr2:1657137-1659563 FORWARD LENGTH=578;; (*ITAG) Solyc07g049590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57248597-57253470 transcript_region:SL2.40ch07:57248597..57253470+ go_terms:GO:0005515 functional_description:"Ankyrin repeat and BTB/POZ domain protein (AHRD V1 *-*- A1CMQ3_ASPCL); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00008811g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0.2|0.8|1|1|5|127|332; (*GB) gi|75102960|sp|Q43792.1|ACCO_TOBAC (e_value=8e-117) RecName: Full=1-aminocyclopropane-1-carboxylate oxidase; Short=ACC oxidase; AltName: Full=Ethylene-forming enzyme; Short=EFE;; (*SWP) sp|Q43792|ACCO_TOBAC (e_value=2e-118) 1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1;; (*TAIR) AT1G62380.1 (e_value=4e-93) | Symbols: ACO2, ATACO2 | ACC oxidase 2 | chr1:23082340-23084068 FORWARD LENGTH=320;; (*ITAG) Solyc07g049530.2.1 (e_value=3e-110) genomic_reference:SL2.40ch07 gene_region:57154220-57156391 transcript_region:SL2.40ch07:57154220..57156391+ go_terms:GO:0005507 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q94F66_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0005507 NbS00060057g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|499; (*GB) gi|255541374|ref|XP_002511751.1| (e_value=2e-150) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|O64639|Y2559_ARATH (e_value=9e-112) Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1;; (*TAIR) AT2G45590.1 (e_value=7e-113) | Symbols: | Protein kinase superfamily protein | chr2:18786725-18788776 FORWARD LENGTH=683;; (*ITAG) Solyc01g094020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77351268-77353428 transcript_region:SL2.40ch01:77351268..77353428- go_terms:GO:0006468 functional_description:"Receptor kinase-like protein (AHRD V1 *-*- Q9STJ8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00060057g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|296089109|emb|CBI38812.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STJ8|Y4539_ARATH (e_value=3e-27) Receptor-like serine/threonine-protein kinase At4g25390 OS=Arabidopsis thaliana GN=At4g25390 PE=1 SV=1;; (*TAIR) AT4G25390.2 (e_value=2e-28) | Symbols: | Protein kinase superfamily protein | chr4:12977491-12979446 FORWARD LENGTH=497;; (*ITAG) Solyc01g094020.2.1 (e_value=2e-69) genomic_reference:SL2.40ch01 gene_region:77351268-77353428 transcript_region:SL2.40ch01:77351268..77353428- go_terms:GO:0006468 functional_description:"Receptor kinase-like protein (AHRD V1 *-*- Q9STJ8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00054489g0003.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0|2|0|117; (*ITAG) Solyc05g006300.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:949435-953502 transcript_region:SL2.40ch05:949435..953502- functional_description:"Unknown Protein (AHRD V1)"; NbS00018659g0001.1 protein AED:0.17 eAED:0.17 QI:185|1|1|1|0.5|0.4|5|595|140; (*GB) gi|225423585|ref|XP_002273557.1| (e_value=6e-63) PREDICTED: MOSC domain-containing protein 1, mitochondrial [Vitis vinifera];; (*SWP) sp|Q14CH1|MOCOS_MOUSE (e_value=3e-17) Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1;; (*TAIR) AT1G30910.1 (e_value=8e-62) | Symbols: | Molybdenum cofactor sulfurase family protein | chr1:11000912-11002801 FORWARD LENGTH=318;; (*ITAG) Solyc02g081880.2.1 (e_value=5e-69) genomic_reference:SL2.40ch02 gene_region:40236661-40240294 transcript_region:SL2.40ch02:40236661..40240294- go_terms:GO:0005515 functional_description:"Molybdenum cofactor sulfurase protein-like (AHRD V1 **-- Q653D7_ORYSJ); contains Interpro domain(s) IPR005303 MOSC, N-terminal beta barrel "; GO:0005515 NbS00018659g0009.1 protein AED:0.14 eAED:0.19 QI:0|0.66|0.42|1|0.83|0.71|7|0|315; (*GB) gi|19913109|emb|CAC84547.1| (e_value=0.0) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|P22292|M2OM_BOVIN (e_value=3e-69) Mitochondrial 2-oxoglutarate/malate carrier protein OS=Bos taurus GN=SLC25A11 PE=1 SV=3;; (*TAIR) AT5G19760.1 (e_value=5e-175) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00024711g0014.1 protein AED:0.06 eAED:0.06 QI:1703|0.41|0.53|0.76|0.91|0.84|13|242|388; (*GB) gi|359479228|ref|XP_002274007.2| (e_value=2e-57) PREDICTED: serine/threonine-protein kinase Nek5-like [Vitis vinifera];; (*SWP) sp|Q94CU5|NEK5_ORYSJ (e_value=2e-38) Serine/threonine-protein kinase Nek5 OS=Oryza sativa subsp. japonica GN=NEK5 PE=2 SV=1;; (*TAIR) AT3G44200.1 (e_value=1e-33) | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis, gene A)-related 6 | chr3:15906788-15911365 FORWARD LENGTH=956;; (*ITAG) Solyc11g071970.1.1 (e_value=3e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52362510-52364955 transcript_region:SL2.40ch11:52362510..52364955- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase Nek2 (AHRD V1 *-*- NEK2_ORYSJ); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0006468 NbS00024711g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0.5|2|218|82 NbS00024711g0023.1 protein AED:0.32 eAED:0.32 QI:483|1|0.83|1|0.6|0.5|6|0|196; (*GB) gi|359475490|ref|XP_002263818.2| (e_value=4e-81) PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Vitis vinifera];; (*SWP) sp|Q8GXX0|ERV1_ARATH (e_value=2e-81) FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1 PE=1 SV=1;; (*TAIR) AT1G49880.1 (e_value=2e-82) | Symbols: Erv1 | Erv1/Alr family protein | chr1:18464081-18465914 FORWARD LENGTH=191;; (*ITAG) Solyc11g071960.1.1 (e_value=6e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52357563-52361232 transcript_region:SL2.40ch11:52357563..52361232- go_terms:GO:0055114 functional_description:"FAD-linked sulfhydryl oxidase ALR (AHRD V1 *-*- C1BXP3_ESOLU); contains Interpro domain(s) IPR006863 Erv1/Alr "; GO:0055114 NbS00024711g0007.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|255545349|ref|XP_002513735.1| (e_value=3e-62) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0V865|FAFL_ARATH (e_value=2e-29) Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1;; (*TAIR) AT5G22090.2 (e_value=2e-30) | Symbols: | Protein of unknown function (DUF3049) | chr5:7315003-7316394 REVERSE LENGTH=463;; (*ITAG) Solyc01g009270.1.1 (e_value=8e-78) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3291820-3293241 transcript_region:SL2.40ch01:3291820..3293241- functional_description:"Unknown Protein (AHRD V1)"; NbS00024711g0027.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|0|1|2|0|232; (*GB) gi|225436097|ref|XP_002277822.1| (e_value=5e-73) PREDICTED: uncharacterized protein LOC100261604 isoform 1 [Vitis vinifera];; (*TAIR) AT5G22040.3 (e_value=5e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. | chr5:7297154-7298363 REVERSE LENGTH=284;; (*ITAG) Solyc11g071950.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52350625-52356685 transcript_region:SL2.40ch11:52350625..52356685+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028650g0007.1 protein AED:0.01 eAED:0.01 QI:3|1|0|1|1|1|2|0|466; (*GB) gi|255566807|ref|XP_002524387.1| (e_value=2e-166) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=2e-139) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT1G13230.1 (e_value=2e-140) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:4520679-4522439 FORWARD LENGTH=424;; (*ITAG) Solyc06g069290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39446477-39448191 transcript_region:SL2.40ch06:39446477..39448191+ go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00028650g0004.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.25|1|1|8|0|239; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100795315 [Glycine max];; (*ITAG) Solyc07g018180.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:9642772-9646610 transcript_region:SL2.40ch07:9642772..9646610+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00004287g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|114; (*ITAG) Solyc11g008080.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2273841-2275000 transcript_region:SL2.40ch11:2273841..2275000- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00004287g0007.1 protein AED:0.39 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|134; (*GB) gi|351726134|ref|NP_001237628.1| (e_value=3e-18) uncharacterized protein LOC100306362 [Glycine max];; (*TAIR) AT5G22930.1 (e_value=4e-16) | Symbols: | Protein of unknown function (DUF1635) | chr5:7668229-7669315 REVERSE LENGTH=238;; (*ITAG) Solyc11g008080.1.1 (e_value=4e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2273841-2275000 transcript_region:SL2.40ch11:2273841..2275000- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00039945g0004.1 protein AED:0.19 eAED:0.19 QI:25|1|1|1|1|1|2|393|87 NbS00049877g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|205; (*GB) gi|225461798|ref|XP_002283666.1| (e_value=1e-94) PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera];; (*SWP) sp|Q9SYM2|STHY_ARATH (e_value=4e-77) Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2;; (*TAIR) AT1G78600.2 (e_value=3e-78) | Symbols: LZF1 | light-regulated zinc finger protein 1 | chr1:29567370-29568662 FORWARD LENGTH=319;; (*ITAG) Solyc07g062160.2.1 (e_value=5e-115) genomic_reference:SL2.40ch07 gene_region:62191788-62196800 transcript_region:SL2.40ch07:62191788..62196800+ go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005515,GO:0003700 NbS00013387g0001.1 protein AED:0.15 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224133714|ref|XP_002327662.1| (e_value=5e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g083930.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41753193-41753516 transcript_region:SL2.40ch02:41753193..41753516+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013387g0010.1 protein AED:0.34 eAED:0.34 QI:88|0.81|0.75|1|0.81|0.75|12|0|369; (*GB) gi|297735019|emb|CBI17381.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q58E77|WD82B_XENLA (e_value=1e-77) WD repeat-containing protein 82-B OS=Xenopus laevis GN=wdr82-b PE=2 SV=1;; (*TAIR) AT5G66240.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:26466268-26468201 FORWARD LENGTH=328;; (*ITAG) Solyc02g083940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41756601-41762285 transcript_region:SL2.40ch02:41756601..41762285+ go_terms:GO:0042800 functional_description:"WD repeat protein-like (AHRD V1 **-- Q8RXD8_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042800 NbS00013387g0012.1 protein AED:0.00 eAED:0.00 QI:24|1|1|1|0|0|3|435|75 NbS00013387g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|309; (*GB) gi|61217028|sp|Q8LL11.1|WUS_PETHY (e_value=1e-134) RecName: Full=Protein WUSCHEL; AltName: Full=PhWUS; AltName: Full=Protein TERMINATOR;; (*SWP) sp|Q8LL11|WUS_PETHY (e_value=4e-136) Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1;; (*TAIR) AT2G17950.1 (e_value=1e-40) | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily protein | chr2:7809100-7810671 REVERSE LENGTH=292;; (*ITAG) Solyc02g083950.2.1 (e_value=3e-107) genomic_reference:SL2.40ch02 gene_region:41768119-41769544 transcript_region:SL2.40ch02:41768119..41769544- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00002670g0024.1 protein AED:0.10 eAED:0.13 QI:0|1|0.90|1|0.9|0.90|11|303|800; (*GB) gi|224131634|ref|XP_002321139.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03516|RSN1_YEAST (e_value=2e-29) Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1;; (*TAIR) AT4G22120.6 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771;; (*ITAG) Solyc07g048110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56620600-56630095 transcript_region:SL2.40ch07:56620600..56630095- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C24H6.13 (AHRD V1 **-- YA7D_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00002670g0003.1 protein AED:0.09 eAED:0.15 QI:247|0|0.5|1|0|0.5|2|0|267; (*GB) gi|92429505|gb|ABD93499.2| (e_value=9e-89) cell adhesion protein [Solanum melongena];; (*SWP) sp|Q9SJ81|FLA7_ARATH (e_value=2e-72) Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana GN=FLA7 PE=1 SV=1;; (*TAIR) AT2G04780.2 (e_value=1e-73) | Symbols: FLA7 | FASCICLIN-like arabinoogalactan 7 | chr2:1677488-1678252 FORWARD LENGTH=254;; (*ITAG) Solyc07g048090.1.1 (e_value=8e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56600229-56600927 transcript_region:SL2.40ch07:56600229..56600927- go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 2 (AHRD V1 ***- A9XTK7_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00002670g0011.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|57014004|ref|YP_173475.1| (e_value=5e-66) hypothetical protein NitaMp138 [Nicotiana tabacum]; NbS00002670g0023.1 protein AED:0.06 eAED:0.06 QI:268|1|1|1|1|1|3|371|401; (*GB) gi|13785207|emb|CAC37355.1| (e_value=0.0) putative membrane protein [Solanum tuberosum];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-17) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=2e-142) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc07g048070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56576167-56578449 transcript_region:SL2.40ch07:56576167..56578449+ functional_description:"Membrane protein (AHRD V1 **-- B6U5U8_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00002670g0022.1 protein AED:0.20 eAED:0.20 QI:0|1|0.62|1|1|1|8|0|676; (*GB) gi|359485807|ref|XP_002270988.2| (e_value=0.0) PREDICTED: threonyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|Q0I902|SYT_SYNS3 (e_value=0.0) Threonine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=thrS PE=3 SV=1;; (*TAIR) AT2G04842.1 (e_value=0.0) | Symbols: EMB2761 | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative | chr2:1698466-1701271 REVERSE LENGTH=650;; (*ITAG) Solyc07g048080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56590914-56598265 transcript_region:SL2.40ch07:56590914..56598265+ go_terms:GO:0004829,GO:0042803 functional_description:"Threonyl-tRNA synthetase (AHRD V1 **** D9ZHD6_HYPPE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0004829,GO:0042803 NbS00002670g0021.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|0|0|2|0|144 NbS00040143g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.75|0|0.25|4|0|319; (*GB) gi|11465942|ref|NP_054484.1| (e_value=1e-124) ATP synthase CF0 A subunit [Nicotiana tabacum];; (*SWP) sp|P69372|ATPI_TOBAC (e_value=4e-126) ATP synthase subunit a, chloroplastic OS=Nicotiana tabacum GN=atpI PE=3 SV=1;; (*ITAG) ATCG00150.1 (e_value=4e-122) | Symbols: ATPI | ATPase, F0 complex, subunit A protein | chrC:14021-14770 REVERSE LENGTH=249;; (*ITAG) Solyc10g044560.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22280180-22280758 transcript_region:SL2.40ch10:22280180..22280758- go_terms:GO:0046933,GO:0016820 functional_description:"ATP synthase subunit a chloroplastic (AHRD V1 **** D3WAR6_AUCJA); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0046933,GO:0016820 NbS00054584g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|225458639|ref|XP_002282817.1| (e_value=5e-58) PREDICTED: transcription factor HEC1 [Vitis vinifera];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=7e-44) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=6e-45) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc02g090950.1.1 (e_value=6e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46991663-46992331 transcript_region:SL2.40ch02:46991663..46992331+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00008785g0015.1 protein AED:0.02 eAED:0.02 QI:168|0.8|0.83|1|0.8|0.83|6|1490|513; (*GB) gi|282154858|dbj|BAI60050.1| (e_value=0.0) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q9FE59|SUC4_ARATH (e_value=0.0) Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2;; (*TAIR) AT1G09960.1 (e_value=0.0) | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter 4 | chr1:3244258-3246718 FORWARD LENGTH=510;; (*ITAG) Solyc04g076960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59497251-59504210 transcript_region:SL2.40ch04:59497251..59504210- go_terms:GO:0008506 functional_description:"Sucrose transporter (AHRD V1 **** Q9FVJ6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00008785g0014.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|543; (*GB) gi|255537876|ref|XP_002510003.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=2e-48) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G58340.1 (e_value=0.0) | Symbols: ZF14 | MATE efflux family protein | chr1:21653162-21655117 FORWARD LENGTH=532;; (*ITAG) Solyc04g076950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59485478-59487628 transcript_region:SL2.40ch04:59485478..59487628- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00046384g0002.1 protein AED:0.17 eAED:0.22 QI:1346|0.5|0.66|1|0|0|3|61|292 NbS00046384g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.8|0.5|1|0.8|0.66|6|0|769; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=2e-124) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=2e-98) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=1e-98) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc02g078660.2.1 (e_value=3e-170) genomic_reference:SL2.40ch02 gene_region:37901791-37906221 transcript_region:SL2.40ch02:37901791..37906221- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00058231g0005.1 protein AED:0.24 eAED:0.24 QI:130|1|1|1|1|1|12|318|653; (*GB) gi|225458774|ref|XP_002283258.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=7e-33) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G43100.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631;; (*ITAG) Solyc01g098710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80889918-80896362 transcript_region:SL2.40ch01:80889918..80896362- go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00058231g0008.1 protein AED:0.32 eAED:0.32 QI:59|0.8|0.66|1|1|0.83|6|0|157; (*GB) gi|359487776|ref|XP_002284915.2| (e_value=3e-82) PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9ASR4|BCAL2_ARATH (e_value=9e-79) Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1;; (*TAIR) AT5G27410.2 (e_value=9e-78) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:9676362-9682468 FORWARD LENGTH=936;; (*ITAG) Solyc01g098700.2.1 (e_value=3e-103) genomic_reference:SL2.40ch01 gene_region:80878024-80889329 transcript_region:SL2.40ch01:80878024..80889329+ go_terms:GO:0008152 functional_description:"Branched-chain amino acid aminotransferase-like protein (AHRD V1 ***- Q84L60_CICAR); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00002710g0023.1 protein AED:0.13 eAED:0.14 QI:0|0.66|0.6|1|0.88|0.8|10|0|593; (*GB) gi|297737936|emb|CBI27137.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M995|GUN5_ARATH (e_value=0.0) Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1;; (*TAIR) AT1G48930.1 (e_value=0.0) | Symbols: AtGH9C1, GH9C1 | glycosyl hydrolase 9C1 | chr1:18101782-18104587 REVERSE LENGTH=627;; (*ITAG) Solyc02g014220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:6688560-6692345 transcript_region:SL2.40ch02:6688560..6692345+ go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00002710g0002.1 protein AED:0.04 eAED:0.04 QI:167|0.87|0.88|1|0.25|0.11|9|133|4114; (*GB) gi|356530237|ref|XP_003533689.1| (e_value=0.0) PREDICTED: sacsin-like [Glycine max];; (*SWP) sp|Q9JLC8|SACS_MOUSE (e_value=3e-116) Sacsin OS=Mus musculus GN=Sacs PE=1 SV=2;; (*TAIR) AT5G23110.1 (e_value=0.0) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr5:7758307-7775509 FORWARD LENGTH=4706;; (*ITAG) Solyc02g014190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:6591707-6611828 transcript_region:SL2.40ch02:6591707..6611828- go_terms:GO:0051087 functional_description:"Genomic DNA chromosome 5 P1 clone MYJ24 (AHRD V1 **-- Q9FN44_ARATH); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0051087 NbS00002710g0021.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|527; (*GB) gi|297737937|emb|CBI27138.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G23110.1 (e_value=0.0) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr5:7758307-7775509 FORWARD LENGTH=4706;; (*ITAG) Solyc02g014170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:6567520-6572674 transcript_region:SL2.40ch02:6567520..6572674- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 2 (AHRD V1 *--- Q6P6S1_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00002710g0006.1 protein AED:0.27 eAED:0.36 QI:0|0|0|1|1|1|2|0|500; (*GB) gi|255558584|ref|XP_002520317.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FVX2|PP129_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2;; (*TAIR) AT1G77360.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=517;; (*ITAG) Solyc11g070040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51683590-51685026 transcript_region:SL2.40ch11:51683590..51685026+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00042111g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|0|0|2|0|123; (*GB) gi|224144208|ref|XP_002325220.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g015940.2.1 (e_value=4e-25) genomic_reference:SL2.40ch08 gene_region:6283275-6284559 transcript_region:SL2.40ch08:6283275..6284559+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 6 (AHRD V1 *-*- EPFL6_ARATH)"; NbS00017611g0003.1 protein AED:0.09 eAED:0.09 QI:320|0.92|0.85|1|0.84|0.85|14|250|458; (*GB) gi|225462522|ref|XP_002264528.1| (e_value=0.0) PREDICTED: galacturonokinase [Vitis vinifera];; (*SWP) sp|Q8VYG2|GALAK_ARATH (e_value=0.0) Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1;; (*TAIR) AT3G10700.1 (e_value=0.0) | Symbols: GalAK | galacturonic acid kinase | chr3:3346789-3350863 REVERSE LENGTH=424;; (*ITAG) Solyc07g014640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5018948-5030188 transcript_region:SL2.40ch07:5018948..5030188+ go_terms:GO:0016310,GO:0005737,GO:0046835 functional_description:"Galactokinase-like protein (AHRD V1 ***- Q9SG76_ARATH); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0016310,GO:0005737,GO:0046835 NbS00012537g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.54|1|0.7|0.63|11|506|487; (*GB) gi|225454252|ref|XP_002274726.1| (e_value=0.0) PREDICTED: signal peptide peptidase-like 2B [Vitis vinifera];; (*SWP) sp|Q5PQL3|SPP2B_RAT (e_value=4e-19) Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1;; (*TAIR) AT1G01650.1 (e_value=0.0) | Symbols: SPPL4, ATSPPL4 | SIGNAL PEPTIDE PEPTIDASE-LIKE 4 | chr1:233188-237647 REVERSE LENGTH=540;; (*ITAG) Solyc10g012430.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5095597-5108835 transcript_region:SL2.40ch10:5095597..5108835- go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00012537g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|57014022|ref|YP_173493.1| (e_value=5e-31) hypothetical protein NitaMp156 [Nicotiana tabacum]; NbS00012537g0002.1 protein AED:0.41 eAED:0.54 QI:0|0|0|1|1|1|2|0|232; (*GB) gi|359489625|ref|XP_002275132.2| (e_value=6e-67) PREDICTED: uncharacterized protein LOC100244782 [Vitis vinifera];; (*TAIR) AT2G45980.1 (e_value=2e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18917680-18918569 REVERSE LENGTH=256;; (*ITAG) Solyc01g094770.2.1 (e_value=1e-66) genomic_reference:SL2.40ch01 gene_region:77943220-77947201 transcript_region:SL2.40ch01:77943220..77947201- functional_description:"Unknown Protein (AHRD V1)"; NbS00056356g0003.1 protein AED:0.08 eAED:0.52 QI:92|0|0|1|0|0|2|0|38 NbS00013483g0111.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|0.5|2|166|180 NbS00013483g0106.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|166 NbS00013483g0112.1 protein AED:0.06 eAED:0.07 QI:0|1|0.66|1|0.5|0.33|3|0|103 NbS00013483g0116.1 protein AED:0.20 eAED:0.21 QI:1|0.16|0|1|0.16|0.14|7|0|502 NbS00031004g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|199 NbS00031004g0008.1 protein AED:0.47 eAED:0.47 QI:0|0.5|0.28|0.85|0.5|0.42|7|0|164; (*GB) gi|350538379|ref|NP_001234340.1| (e_value=6e-49) gamma aminobutyrate transaminase 2 [Solanum lycopersicum];; (*SWP) sp|Q84P53|GATP2_SOLLC (e_value=2e-50) Gamma aminobutyrate transaminase 2 OS=Solanum lycopersicum GN=GABA-TP2 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=2e-39) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc12g006470.1.1 (e_value=1e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:956774-962587 transcript_region:SL2.40ch12:956774..962587+ go_terms:GO:0030170 functional_description:"Aminotransferase-like protein (AHRD V1 ***- Q9LIE2_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00031004g0007.1 protein AED:0.46 eAED:0.59 QI:16|0.5|0.33|1|0.5|0.66|3|0|59; (*GB) gi|303306207|gb|ADM13673.1| (e_value=6e-23) putative aminotransferase [Capsicum annuum];; (*SWP) sp|Q01K11|GATP1_ORYSI (e_value=1e-20) Gamma-aminobutyrate transaminase 1, mitochondrial OS=Oryza sativa subsp. indica GN=OsI_17385 PE=3 SV=1;; (*TAIR) AT3G22200.1 (e_value=4e-20) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc08g014610.2.1 (e_value=4e-25) genomic_reference:SL2.40ch08 gene_region:4733819-4743733 transcript_region:SL2.40ch08:4733819..4743733- go_terms:GO:0008453 functional_description:"Alanine--glyoxylate aminotransferase 2-like 1 (AHRD V1 **** AT2L1_MOUSE); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0008453 NbS00009528g0009.1 protein AED:0.13 eAED:0.13 QI:135|1|1|1|0.83|0.85|7|367|340; (*GB) gi|224085515|ref|XP_002307602.1| (e_value=0.0) homocysteine s-methyltransferase [Populus trichocarpa];; (*SWP) sp|Q9M1W4|HMT2_ARATH (e_value=8e-170) Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1;; (*TAIR) AT3G63250.1 (e_value=6e-171) | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase 2 | chr3:23370575-23372587 REVERSE LENGTH=333;; (*ITAG) Solyc09g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63571846-63576586 transcript_region:SL2.40ch09:63571846..63576586- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9HUS6_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00009528g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.33|1|0.8|0.83|6|0|405; (*GB) gi|356497440|ref|XP_003517568.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-53) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT3G22750.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:8037364-8039096 REVERSE LENGTH=378;; (*ITAG) Solyc09g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63579551-63584081 transcript_region:SL2.40ch09:63579551..63584081- go_terms:GO:0004708 functional_description:"Kinase-like protein (AHRD V1 **** Q9LUI6_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00031024g0001.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|255570591|ref|XP_002526252.1| (e_value=3e-164) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|P52409|E13B_WHEAT (e_value=1e-98) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT5G24318.1 (e_value=5e-149) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:8282285-8283956 REVERSE LENGTH=458;; (*ITAG) Solyc03g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46334527-46335794 transcript_region:SL2.40ch03:46334527..46335794+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6TY63_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00031024g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|0|238; (*GB) gi|302143933|emb|CBI23038.3| (e_value=7e-119) unnamed protein product [Vitis vinifera];; (*SWP) sp|P81760|TL17_ARATH (e_value=2e-98) Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2;; (*TAIR) AT5G53490.1 (e_value=1e-99) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21723488-21724621 REVERSE LENGTH=236;; (*ITAG) Solyc03g082890.2.1 (e_value=9e-147) genomic_reference:SL2.40ch03 gene_region:46330916-46333715 transcript_region:SL2.40ch03:46330916..46333715+ go_terms:GO:0005515 functional_description:"Pentapeptide repeat protein (AHRD V1 *-*- B4WQI2_9SYNE); contains Interpro domain(s) IPR001646 Pentapeptide repeat "; GO:0005515 NbS00028788g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|246; (*GB) gi|224116510|ref|XP_002331915.1| (e_value=3e-128) aquaporin, MIP family, TIP subfamily [Populus trichocarpa];; (*SWP) sp|O22588|TIP32_ARATH (e_value=6e-113) Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1;; (*TAIR) AT1G17810.1 (e_value=4e-114) | Symbols: BETA-TIP | beta-tonoplast intrinsic protein | chr1:6130209-6131442 FORWARD LENGTH=267;; (*ITAG) Solyc06g072130.2.1 (e_value=4e-156) genomic_reference:SL2.40ch06 gene_region:40841984-40843909 transcript_region:SL2.40ch06:40841984..40843909- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00019083g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|359; (*GB) gi|134303282|gb|ABO70984.1| (e_value=0.0) gibberellin 3-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=6e-139) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=5e-140) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc03g119910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62510868-62512249 transcript_region:SL2.40ch03:62510868..62512249+ go_terms:GO:0016707 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 **** D9ZZW4_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016707 NbS00019083g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|1059; (*GB) gi|225442773|ref|XP_002280900.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248030 [Vitis vinifera];; (*TAIR) AT1G52780.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF2921) | chr1:19658846-19662025 FORWARD LENGTH=1059;; (*ITAG) Solyc03g119920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62514265-62517420 transcript_region:SL2.40ch03:62514265..62517420- functional_description:"Unknown Protein (AHRD V1)"; NbS00009495g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0|0.33|3|0|256; (*GB) gi|225465191|ref|XP_002263798.1| (e_value=2e-116) PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera];; (*SWP) sp|Q8GWR3|QKIL5_ARATH (e_value=5e-93) KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1;; (*TAIR) AT1G09660.1 (e_value=3e-94) | Symbols: | RNA-binding KH domain-containing protein | chr1:3128032-3130791 REVERSE LENGTH=298;; (*ITAG) Solyc01g103410.2.1 (e_value=5e-129) genomic_reference:SL2.40ch01 gene_region:83770913-83781702 transcript_region:SL2.40ch01:83770913..83781702- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6T8Q7_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00009495g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|534; (*GB) gi|350536667|ref|NP_001234770.1| (e_value=0.0) dihydrolipoamide dehydrogenase precursor [Solanum lycopersicum];; (*SWP) sp|Q9M5K3|DLDH1_ARATH (e_value=0.0) Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2;; (*TAIR) AT1G48030.2 (e_value=0.0) | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase 1 | chr1:17717432-17719141 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00009495g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|346; (*GB) gi|224112040|ref|XP_002316063.1| (e_value=1e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=3e-135) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.2 (e_value=2e-136) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=384;; (*ITAG) Solyc05g053290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62568720-62571308 transcript_region:SL2.40ch05:62568720..62571308+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase-2C (AHRD V1 ***- O82469_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00009495g0017.1 protein AED:0.05 eAED:0.05 QI:89|0.83|0.85|1|0.66|0.85|7|71|623; (*GB) gi|225432114|ref|XP_002274418.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 16 [Vitis vinifera];; (*SWP) sp|Q9ASW1|B3GTG_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1;; (*TAIR) AT3G06440.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr3:1972913-1975272 REVERSE LENGTH=619;; (*ITAG) Solyc05g053280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62560445-62565973 transcript_region:SL2.40ch05:62560445..62565973+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta 1 3 galactosyltransferase (AHRD V1 ***- B6TVN8_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00009495g0018.1 protein AED:0.22 eAED:0.22 QI:90|0.75|0.53|1|0.75|0.69|13|0|797; (*GB) gi|225432124|ref|XP_002264226.1| (e_value=0.0) PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera];; (*SWP) sp|Q9M548|DRM2_ARATH (e_value=2e-88) DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1;; (*TAIR) AT3G17310.1 (e_value=1e-142) | Symbols: DRM3, AtDRM3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:5909294-5912838 REVERSE LENGTH=710;; (*ITAG) Solyc05g053260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62542766-62558988 transcript_region:SL2.40ch05:62542766..62558988+ functional_description:"DNA methyltransferase (AHRD V1 *-*- Q76KU6_TOBAC)"; NbS00009495g0111.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|346 NbS00009495g0114.1 protein AED:0.27 eAED:0.27 QI:428|0.81|0.75|1|0.54|0.58|12|0|943 NbS00011400g0013.1 protein AED:0.42 eAED:0.45 QI:0|0|0|0.66|0|0.33|3|0|150; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-36) hypothetical protein [Nicotiana tabacum]; NbS00011400g0015.1 protein AED:0.13 eAED:0.20 QI:53|0.63|0.66|0.91|0.63|0.75|12|0|359; (*GB) gi|225447338|ref|XP_002274324.1| (e_value=1e-146) PREDICTED: histone-lysine N-methyltransferase ATXR2-like [Vitis vinifera];; (*SWP) sp|Q5PP37|ATXR2_ARATH (e_value=1e-143) Histone-lysine N-methyltransferase ATXR2 OS=Arabidopsis thaliana GN=ATXR2 PE=2 SV=1;; (*TAIR) AT3G21820.1 (e_value=9e-145) | Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase ATXR2 | chr3:7688629-7691444 REVERSE LENGTH=473;; (*ITAG) Solyc07g052570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58377403-58384583 transcript_region:SL2.40ch07:58377403..58384583- functional_description:"SET and zf-MYND domain-containing protein (AHRD V1 ***- D8U5L8_VOLCA); contains Interpro domain(s) IPR001214 SET "; NbS00011400g0014.1 protein AED:0.34 eAED:0.34 QI:480|1|0.87|1|1|0.87|8|0|382; (*GB) gi|225447334|ref|XP_002280408.1| (e_value=3e-149) PREDICTED: traB domain-containing protein isoform 1 [Vitis vinifera];; (*SWP) sp|Q58DF3|TRABD_BOVIN (e_value=2e-20) TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1;; (*TAIR) AT1G05270.1 (e_value=2e-131) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00050400g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|0.5|0.66|3|0|174; (*GB) gi|359474959|ref|XP_003631559.1| (e_value=2e-49) PREDICTED: ser/Thr-rich protein T10 in DGCR region-like [Vitis vinifera];; (*TAIR) AT4G38260.1 (e_value=3e-32) | Symbols: | Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275;; (*ITAG) Solyc02g021340.2.1 (e_value=2e-84) genomic_reference:SL2.40ch02 gene_region:13199689-13206298 transcript_region:SL2.40ch02:13199689..13206298+ go_terms:GO:0005515 functional_description:"Ser/Thr-rich protein T10 in DGCR region (AHRD V1 **-- B6TDB2_MAIZE); contains Interpro domain(s) IPR008551 Protein of unknown function DUF833 "; GO:0005515 NbS00058547g0002.1 protein AED:0.08 eAED:0.08 QI:4|0.75|0.4|1|1|1|5|0|526; (*GB) gi|348515729|ref|XP_003445392.1| (e_value=0.0) PREDICTED: tubulin alpha chain-like [Oreochromis niloticus];; (*SWP) sp|P33623|TBA1_ANEPH (e_value=0.0) Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc02g087880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44730447-44732299 transcript_region:SL2.40ch02:44730447..44732299+ go_terms:GO:0046982 functional_description:"Tubulin alpha-7 chain (AHRD V1 ***- B9IJV8_POPTR); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982 NbS00014136g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|0.66|0.5|4|0|354; (*GB) gi|255579771|ref|XP_002530724.1| (e_value=3e-149) Peroxidase 53 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LEH3|PER15_IPOBA (e_value=8e-145) Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1;; (*TAIR) AT5G06720.1 (e_value=2e-144) | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335;; (*ITAG) Solyc11g072920.1.1 (e_value=1e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53161025-53162350 transcript_region:SL2.40ch11:53161025..53162350- go_terms:GO:0055114 functional_description:"Peroxidase 5 (AHRD V1 ***- Q9XFL6_PHAVU); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00020009g0006.1 protein AED:0.08 eAED:0.08 QI:180|1|1|1|0.5|0.6|5|1956|565; (*GB) gi|297734029|emb|CBI15276.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00023502g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|519; (*GB) gi|193290658|gb|ACF17637.1| (e_value=6e-163) putative arogenate dehydratase [Capsicum annuum];; (*SWP) sp|Q9SGD6|AROD6_ARATH (e_value=2e-130) Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1;; (*TAIR) AT1G08250.1 (e_value=2e-131) | Symbols: ADT6 | arogenate dehydratase 6 | chr1:2588994-2590235 REVERSE LENGTH=413;; (*ITAG) Solyc06g074530.1.1 (e_value=6e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42502870-42504171 transcript_region:SL2.40ch06:42502870..42504171+ go_terms:GO:0047769 functional_description:"Prephenate dehydratase (AHRD V1 **** Q6JJ29_IPOTF); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0047769 NbS00017622g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|260; (*GB) gi|350539037|ref|NP_001234115.1| (e_value=1e-173) 60S ribosomal protein L8 [Solanum lycopersicum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=3e-175) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=3e-168) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc07g063890.2.1 (e_value=1e-177) genomic_reference:SL2.40ch07 gene_region:63463886-63465926 transcript_region:SL2.40ch07:63463886..63465926+ go_terms:GO:0032183,GO:0003735 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0032183,GO:0003735 NbS00039388g0002.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|601; (*GB) gi|224113871|ref|XP_002316599.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8CG07|WRIP1_RAT (e_value=2e-139) ATPase WRNIP1 OS=Rattus norvegicus GN=Wrnip1 PE=2 SV=1;; (*TAIR) AT1G24290.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:8612650-8614227 REVERSE LENGTH=525;; (*ITAG) Solyc03g118320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61288521-61290272 transcript_region:SL2.40ch03:61288521..61290272+ go_terms:GO:0043142,GO:0043130 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 *--* RUVB_CHLSY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0043142,GO:0043130 NbS00039388g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|341; (*GB) gi|317016596|gb|ACT90640.2| (e_value=2e-77) inducer of CBF expression [Camellia sinensis];; (*SWP) sp|Q9LSE2|ICE1_ARATH (e_value=3e-15) Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1;; (*TAIR) AT3G26744.4 (e_value=2e-16) | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494;; (*ITAG) Solyc06g068870.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:39083842-39089281 transcript_region:SL2.40ch06:39083842..39089281- go_terms:GO:0016563,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00006126g0007.1 protein AED:0.31 eAED:0.31 QI:308|1|0.83|1|0.4|0.16|6|0|227; (*GB) gi|356559051|ref|XP_003547815.1| (e_value=1e-129) PREDICTED: probable calcium-binding protein CML21-like [Glycine max];; (*SWP) sp|Q52K82|CML21_ARATH (e_value=3e-112) Probable calcium-binding protein CML21 OS=Arabidopsis thaliana GN=CML21 PE=2 SV=1;; (*TAIR) AT4G26470.1 (e_value=2e-113) | Symbols: | Calcium-binding EF-hand family protein | chr4:13371377-13372343 FORWARD LENGTH=231;; (*ITAG) Solyc10g005750.2.1 (e_value=6e-151) genomic_reference:SL2.40ch10 gene_region:609439-611689 transcript_region:SL2.40ch10:609439..611689+ go_terms:GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 **-* B2KTA9_WHEAT); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006126g0111.1 protein AED:0.12 eAED:0.12 QI:289|1|1|1|0.88|0.8|10|508|446 NbS00006126g0112.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|123 NbS00006126g0110.1 protein AED:0.31 eAED:0.39 QI:18|0.2|0.16|1|0.8|0.83|6|0|375 NbS00006126g0102.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147 NbS00006126g0105.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.66|1|1|3|0|67 NbS00006126g0115.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|86 NbS00007385g0014.1 protein AED:0.01 eAED:0.06 QI:0|1|0|1|0|0|2|155|575; (*GB) gi|225456536|ref|XP_002262858.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 11-like [Vitis vinifera];; (*SWP) sp|Q949Q1|GAUTB_ARATH (e_value=0.0) Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1;; (*TAIR) AT1G18580.1 (e_value=0.0) | Symbols: GAUT11 | galacturonosyltransferase 11 | chr1:6396144-6398005 FORWARD LENGTH=537;; (*ITAG) Solyc03g114810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58741832-58746719 transcript_region:SL2.40ch03:58741832..58746719- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00007385g0017.1 protein AED:0.18 eAED:0.19 QI:0|0.85|0.75|0.87|0.85|0.75|8|0|199; (*GB) gi|8567991|gb|AAF76381.1|AF068723_1 (e_value=6e-137) MADS-box protein MADS4 [Nicotiana tabacum];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=6e-93) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT5G15800.1 (e_value=3e-87) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251;; (*ITAG) Solyc12g038510.1.1 (e_value=9e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35889365-35901176 transcript_region:SL2.40ch12:35889365..35901176- go_terms:GO:0005634 functional_description:"MADS box transcription factor 11 (AHRD V1 ***- D9IFM5_ONCHC); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00007385g0011.1 protein AED:0.03 eAED:0.03 QI:121|1|1|1|1|1|5|259|336; (*GB) gi|313118418|gb|ADR32211.1| (e_value=0.0) MPB2C-like protein [Nicotiana benthamiana];; (*TAIR) AT5G08120.1 (e_value=6e-66) | Symbols: MPB2C | movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326;; (*ITAG) Solyc03g114760.2.1 (e_value=4e-131) genomic_reference:SL2.40ch03 gene_region:58711188-58715633 transcript_region:SL2.40ch03:58711188..58715633+ go_terms:GO:0005515 functional_description:"TMV-MP30 binding protein 2C (AHRD V1 **-* Q8S556_TOBAC)"; GO:0005515 NbS00007385g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.85|1|0.83|0.71|7|661|227; (*GB) gi|78191406|gb|ABB29924.1| (e_value=4e-82) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P48006|EF1D1_ARATH (e_value=5e-76) Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2;; (*TAIR) AT1G30230.1 (e_value=4e-77) | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr1:10639286-10640515 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=9e-88) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00018395g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|161702915|gb|ABX76298.1| (e_value=2e-119) sexual organ expressed protein [Nicotiana alata];; (*SWP) sp|P58515|SPI2_SOLTU (e_value=1e-34) Serine protease inhibitor 2 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G17860.1 (e_value=8e-26) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g020010.1.1 (e_value=1e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00018395g0009.1 protein AED:0.20 eAED:0.28 QI:72|0.5|0.33|1|1|1|3|0|83; (*ITAG) Solyc03g098750.2.1 (e_value=4e-26) genomic_reference:SL2.40ch03 gene_region:54474889-54477037 transcript_region:SL2.40ch03:54474889..54477037- functional_description:"Unknown Protein (AHRD V1)"; NbS00018395g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|207; (*GB) gi|161702915|gb|ABX76298.1| (e_value=4e-84) sexual organ expressed protein [Nicotiana alata];; (*SWP) sp|P58515|SPI2_SOLTU (e_value=1e-25) Serine protease inhibitor 2 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G73260.1 (e_value=4e-22) | Symbols: ATKTI1, KTI1 | kunitz trypsin inhibitor 1 | chr1:27547410-27548057 REVERSE LENGTH=215;; (*ITAG) Solyc03g020010.1.1 (e_value=4e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00034173g0003.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|6|251|415; (*GB) gi|356557034|ref|XP_003546823.1| (e_value=0.0) PREDICTED: metal tolerance protein 10-like [Glycine max];; (*SWP) sp|Q0WU02|MTP10_ARATH (e_value=0.0) Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1;; (*TAIR) AT1G16310.1 (e_value=0.0) | Symbols: | Cation efflux family protein | chr1:5578435-5580585 FORWARD LENGTH=428;; (*ITAG) Solyc10g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:414474-416809 transcript_region:SL2.40ch10:414474..416809- go_terms:GO:0016020 functional_description:"Cation diffusion facilitator 9 (AHRD V1 **-- Q84ND5_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00053606g0003.1 protein AED:0.04 eAED:0.04 QI:166|0|0.5|1|1|1|2|0|516; (*GB) gi|142942407|gb|ABO92982.1| (e_value=0.0) putative AAA ATPase [Solanum tuberosum];; (*TAIR) AT3G28580.1 (e_value=1e-165) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10715736-10717238 FORWARD LENGTH=500;; (*ITAG) Solyc05g007470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2038021-2039981 transcript_region:SL2.40ch05:2038021..2039981+ go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00016482g0003.1 protein AED:0.00 eAED:0.00 QI:589|1|1|1|1|1|2|518|282; (*GB) gi|237664619|gb|ACR09748.1| (e_value=9e-135) DIV3B protein [Heptacodium miconioides];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=4e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=2e-111) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc09g014250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5739857-5741930 transcript_region:SL2.40ch09:5739857..5741930+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00055645g0001.1 protein AED:0.00 eAED:0.00 QI:258|1|0.5|1|0|0|2|0|625; (*GB) gi|225459405|ref|XP_002284293.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Vitis vinifera];; (*SWP) sp|Q0WNP3|PP319_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1;; (*TAIR) AT4G18520.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10215250-10217103 REVERSE LENGTH=617;; (*ITAG) Solyc07g062820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62696420-62698273 transcript_region:SL2.40ch07:62696420..62698273+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein PPR1106-17 (AHRD V1 ***- B6SWY6_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00019291g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|1|1|7|316|423; (*GB) gi|255571016|ref|XP_002526459.1| (e_value=0.0) sodium-bile acid cotransporter, putative [Ricinus communis];; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-55) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT1G78560.1 (e_value=6e-78) | Symbols: | Sodium Bile acid symporter family | chr1:29546846-29548764 REVERSE LENGTH=401;; (*ITAG) Solyc01g103620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83943092-83946456 transcript_region:SL2.40ch01:83943092..83946456- go_terms:GO:0015370 functional_description:"Sodium Bile acid symporter family protein expressed (AHRD V1 **** Q2QX41_ORYSJ); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0015370 NbS00024745g0008.1 protein AED:0.11 eAED:0.11 QI:182|0.77|0.7|1|1|1|10|339|722; (*GB) gi|356533037|ref|XP_003535075.1| (e_value=0.0) PREDICTED: lysosomal beta glucosidase-like [Glycine max];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=2e-70) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G04885.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc01g097000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79740438-79746490 transcript_region:SL2.40ch01:79740438..79746490+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00024745g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|0|0.66|3|0|109; (*GB) gi|147811544|emb|CAN61088.1| (e_value=3e-29) hypothetical protein VITISV_033584 [Vitis vinifera];; (*TAIR) AT5G14600.1 (e_value=1e-29) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318;; (*ITAG) Solyc02g086640.2.1 (e_value=1e-33) genomic_reference:SL2.40ch02 gene_region:43875144-43877324 transcript_region:SL2.40ch02:43875144..43877324+ go_terms:GO:0005515 functional_description:"tRNA adenine-N1 methyltransferase catalytic subunit TRM61 (AHRD V1 ***- C1C0S4_9MAXI); contains Interpro domain(s) IPR014816 tRNA methyltransferase complex GCD14 subunit "; GO:0005515 NbC25305509g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|77 NbS00013739g0003.1 protein AED:0.14 eAED:0.14 QI:260|0.71|0.86|1|0.71|0.8|15|266|502; (*GB) gi|350537233|ref|NP_001234285.1| (e_value=0.0) lysine--tRNA ligase [Solanum lycopersicum];; (*SWP) sp|Q43776|SYK_SOLLC (e_value=0.0) Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1;; (*TAIR) AT3G11710.1 (e_value=0.0) | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702359-3705613 REVERSE LENGTH=626;; (*ITAG) Solyc10g076610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58891629-58895117 transcript_region:SL2.40ch10:58891629..58895117- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SY11_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00011673g0001.1 protein AED:0.14 eAED:0.16 QI:71|0.61|0.57|1|1|1|14|0|1188; (*GB) gi|225432963|ref|XP_002284428.1| (e_value=0.0) PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera];; (*SWP) sp|Q8RY18|Y5436_ARATH (e_value=5e-168) MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1;; (*TAIR) AT1G04300.1 (e_value=0.0) | Symbols: | TRAF-like superfamily protein | chr1:1148818-1153895 REVERSE LENGTH=1074;; (*ITAG) Solyc03g005430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:303777-317879 transcript_region:SL2.40ch03:303777..317879- functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00001871g0010.1 protein AED:0.18 eAED:0.18 QI:115|0.8|0.83|1|1|1|6|436|435; (*GB) gi|147773362|emb|CAN75716.1| (e_value=0.0) hypothetical protein VITISV_007757 [Vitis vinifera];; (*SWP) sp|Q8VZJ9|Y4330_ARATH (e_value=3e-162) Probable leucine-rich repeat receptor-like protein kinase At4g00330 OS=Arabidopsis thaliana GN=At4g00330 PE=2 SV=1;; (*TAIR) AT4G00330.1 (e_value=2e-163) | Symbols: CRCK2 | calmodulin-binding receptor-like cytoplasmic kinase 2 | chr4:142787-144427 REVERSE LENGTH=411;; (*ITAG) Solyc10g012170.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4518212-4524148 transcript_region:SL2.40ch10:4518212..4524148- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM39_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00001871g0011.1 protein AED:0.54 eAED:0.54 QI:189|0.5|0.66|0.66|0.5|0.33|3|0|98 NbS00011726g0010.1 protein AED:0.20 eAED:0.21 QI:0|0.87|0.66|1|1|1|9|0|523; (*GB) gi|225446724|ref|XP_002278150.1| (e_value=0.0) PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|E0CTY1|GATA_VITVI (e_value=0.0) Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATA PE=3 SV=1;; (*TAIR) AT3G25660.1 (e_value=0.0) | Symbols: | Amidase family protein | chr3:9339640-9342044 REVERSE LENGTH=537;; (*ITAG) Solyc10g007840.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2047380-2052961 transcript_region:SL2.40ch10:2047380..2052961- go_terms:GO:0050567 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A8YF31_MICAE); contains Interpro domain(s) IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit "; GO:0050567 NbS00011726g0015.1 protein AED:0.28 eAED:0.28 QI:131|0.77|0.7|1|0.77|0.8|10|375|339; (*GB) gi|224116008|ref|XP_002332025.1| (e_value=1e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8T4E1|GPI8_DROME (e_value=5e-89) Putative GPI-anchor transamidase OS=Drosophila melanogaster GN=CG4406 PE=2 SV=1;; (*TAIR) AT1G08750.3 (e_value=3e-156) | Symbols: | Peptidase C13 family | chr1:2801283-2804392 FORWARD LENGTH=388;; (*ITAG) Solyc10g007850.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2054558-2061446 transcript_region:SL2.40ch10:2054558..2061446- go_terms:GO:0003923,GO:0042802 functional_description:"Gpi-anchor transamidase (AHRD V1 **-* Q16SV5_AEDAE); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0003923,GO:0042802 NbS00011726g0014.1 protein AED:0.39 eAED:0.46 QI:0|0|0|0.66|0.2|0.66|6|0|281; (*ITAG) Solyc03g122200.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00009456g0019.1 protein AED:0.17 eAED:0.17 QI:178|1|0.87|1|1|0.93|16|0|967; (*GB) gi|302141987|emb|CBI19190.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M9E8|FB92_ARATH (e_value=0.0) F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3;; (*TAIR) AT1G78280.1 (e_value=0.0) | Symbols: | transferases, transferring glycosyl groups | chr1:29452823-29457118 FORWARD LENGTH=943;; (*ITAG) Solyc04g074490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58075543-58086499 transcript_region:SL2.40ch04:58075543..58086499+ go_terms:GO:0016757 functional_description:"Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (AHRD V1 *--- JMJD6_DANRE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0016757 NbS00009456g0020.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.88|0.8|10|206|362; (*GB) gi|225459219|ref|XP_002284058.1| (e_value=1e-177) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-57) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G22460.1 (e_value=2e-150) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00009456g0023.1 protein AED:0.33 eAED:0.34 QI:160|0.71|0.73|1|0.71|0.73|15|263|365; (*GB) gi|11387206|sp|Q9THX6.1|TL29_SOLLC (e_value=9e-160) RecName: Full=Thylakoid lumenal 29 kDa protein, chloroplastic; Short=TL29; AltName: Full=LeAPx09; AltName: Full=P29; Flags: Precursor;; (*SWP) sp|Q9THX6|TL29_SOLLC (e_value=3e-161) Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1;; (*TAIR) AT4G09010.1 (e_value=3e-111) | Symbols: APX4, TL29 | ascorbate peroxidase 4 | chr4:5777502-5779338 REVERSE LENGTH=349;; (*ITAG) Solyc04g074640.2.1 (e_value=3e-163) genomic_reference:SL2.40ch04 gene_region:58163011-58168188 transcript_region:SL2.40ch04:58163011..58168188- go_terms:GO:0005031 functional_description:"L-ascorbate peroxidase (AHRD V1 ***- A8JG56_CHLRE); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0005031 NbS00009456g0021.1 protein AED:0.47 eAED:0.69 QI:0|0.5|0|1|0|0|3|0|69; (*GB) gi|302141996|emb|CBI19199.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g074670.2.1 (e_value=8e-21) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00009456g0025.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|0.33|0.25|4|0|637; (*GB) gi|225447818|ref|XP_002267905.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q66GI4|PP179_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g32230, mitochondrial OS=Arabidopsis thaliana GN=At2g32230 PE=2 SV=1;; (*TAIR) AT2G32230.1 (e_value=0.0) | Symbols: PRORP1 | proteinaceous RNase P 1 | chr2:13679608-13681756 REVERSE LENGTH=572;; (*ITAG) Solyc06g065500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37276957-37282094 transcript_region:SL2.40ch06:37276957..37282094- go_terms:GO:0004526,GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEW3_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0004526,GO:0005215 NbS00009456g0017.1 protein AED:0.22 eAED:0.22 QI:624|0.83|0.85|1|0.66|0.71|7|0|144; (*GB) gi|255545790|ref|XP_002513955.1| (e_value=3e-53) Serine/threonine-protein kinase SAPK1, putative [Ricinus communis];; (*SWP) sp|Q75LR7|SAPK1_ORYSJ (e_value=1e-47) Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1;; (*TAIR) AT4G33950.2 (e_value=2e-39) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | Protein kinase superfamily protein | chr4:16272819-16274657 FORWARD LENGTH=314;; (*ITAG) Solyc04g074500.2.1 (e_value=3e-69) genomic_reference:SL2.40ch04 gene_region:58086749-58090596 transcript_region:SL2.40ch04:58086749..58090596- go_terms:GO:0004679 functional_description:"Serine-threonine protein kinase (AHRD V1 **** Q09VQ1_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00009456g0103.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|416 NbS00009456g0105.1 protein AED:0.21 eAED:0.53 QI:0|0|0|1|1|1|2|0|342 NbS00009456g0102.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|102 NbS00009456g0112.1 protein AED:0.20 eAED:0.19 QI:109|1|0.9|1|1|1|10|174|534 NbS00009456g0115.1 protein AED:0.48 eAED:0.48 QI:0|0.66|0.25|0.75|1|1|4|0|165 NbS00010207g0004.1 protein AED:0.33 eAED:0.36 QI:0|0.5|0|1|0.75|0.2|5|0|316; (*GB) gi|255569920|ref|XP_002525923.1| (e_value=6e-70) 60S ribosomal protein L7a, putative [Ricinus communis];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=5e-42) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G15790.2 (e_value=3e-46) | Symbols: | RING/U-box superfamily protein | chr5:5149800-5150964 FORWARD LENGTH=232;; (*ITAG) Solyc02g089240.2.1 (e_value=5e-111) genomic_reference:SL2.40ch02 gene_region:45681209-45686565 transcript_region:SL2.40ch02:45681209..45686565- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00043154g0001.1 protein AED:0.44 eAED:0.44 QI:0|0.6|0.33|0.83|1|1|6|0|171; (*GB) gi|357125356|ref|XP_003564360.1| (e_value=2e-44) PREDICTED: diacylglycerol kinase zeta-like [Brachypodium distachyon];; (*TAIR) AT2G20900.2 (e_value=6e-38) | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491;; (*ITAG) Solyc12g005380.1.1 (e_value=6e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:224569-229111 transcript_region:SL2.40ch12:224569..229111+ go_terms:GO:0007205 functional_description:"Diacylglycerol kinase (AHRD V1 ***- Q9FVD1_SOLLC); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0007205 NbS00059287g0005.1 protein AED:0.14 eAED:0.15 QI:0|0.81|0.66|1|0.72|0.58|12|0|784; (*GB) gi|359473511|ref|XP_002272014.2| (e_value=2e-126) PREDICTED: transcription elongation regulator 1-like [Vitis vinifera];; (*TAIR) AT3G19840.1 (e_value=3e-75) | Symbols: ATPRP40C, PRP40C | pre-mRNA-processing protein 40C | chr3:6891228-6897227 FORWARD LENGTH=835;; (*ITAG) Solyc04g008700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00013889g0001.1 protein AED:0.00 eAED:0.00 QI:82|0.5|0.66|1|0|0|3|1060|84; (*GB) gi|388512517|gb|AFK44320.1| (e_value=1e-25) unknown [Lotus japonicus];; (*SWP) sp|P38389|SC61B_ARATH (e_value=8e-23) Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1;; (*TAIR) AT3G60540.2 (e_value=3e-24) | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr3:22375132-22375377 REVERSE LENGTH=81;; (*ITAG) Solyc03g116990.1.1 (e_value=4e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:60310273-60310602 transcript_region:SL2.40ch03:60310273..60310602- functional_description:"Protein transport protein Sec61 beta subunit (AHRD V1 *-*- B6UEM6_MAIZE); contains Interpro domain(s) IPR016482 Preprotein translocase Sec, Sec61-beta subunit, eukarya "; NbS00013889g0013.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|1|0.5|2|0|258; (*ITAG) Solyc05g050840.2.1 (e_value=1e-94) genomic_reference:SL2.40ch05 gene_region:60209514-60213820 transcript_region:SL2.40ch05:60209514..60213820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013889g0012.1 protein AED:0.46 eAED:0.51 QI:0|0|0|0.71|0.16|0.28|7|0|317; (*ITAG) Solyc05g050840.2.1 (e_value=2e-55) genomic_reference:SL2.40ch05 gene_region:60209514-60213820 transcript_region:SL2.40ch05:60209514..60213820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022040g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|84; (*GB) gi|224122918|ref|XP_002330396.1| (e_value=1e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g013500.1.1 (e_value=4e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:4377188-4378488 transcript_region:SL2.40ch12:4377188..4378488- functional_description:"Unknown Protein (AHRD V1)"; NbS00022040g0004.1 protein AED:0.29 eAED:0.34 QI:288|0|0.66|1|0|0.33|3|0|123; (*GB) gi|255578546|ref|XP_002530136.1| (e_value=3e-16) 60S ribosomal protein L18a, plant, putative [Ricinus communis];; (*TAIR) AT1G53560.1 (e_value=5e-16) | Symbols: | Ribosomal protein L18ae family | chr1:19984908-19985960 REVERSE LENGTH=153;; (*ITAG) Solyc12g011440.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:4258481-4261206 transcript_region:SL2.40ch12:4258481..4261206+ functional_description:"60S ribosomal protein L18A (AHRD V1 *-*- B6T286_MAIZE)"; NbS00044687g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|225444147|ref|XP_002269462.1| (e_value=3e-134) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=6e-94) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30710.1 (e_value=4e-115) | Symbols: | FAD-binding Berberine family protein | chr1:10895280-10896875 FORWARD LENGTH=531;; (*ITAG) Solyc02g070090.1.1 (e_value=3e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34506045-34507649 transcript_region:SL2.40ch02:34506045..34507649- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFN2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00048410g0012.1 protein AED:0.04 eAED:0.04 QI:237|1|0.75|1|0.66|0.5|4|43|446; (*GB) gi|225457885|ref|XP_002279280.1| (e_value=2e-153) PREDICTED: uncharacterized protein LOC100260855 [Vitis vinifera];; (*TAIR) AT1G11320.1 (e_value=6e-111) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3807241-3808728 FORWARD LENGTH=424;; (*ITAG) Solyc04g015400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5608921-5612886 transcript_region:SL2.40ch04:5608921..5612886- functional_description:"Os06g0724200 protein (Fragment) (AHRD V1 ***- Q0D9E9_ORYSJ)"; NbS00048410g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|273|948; (*GB) gi|224077350|ref|XP_002305223.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P43298|TMK1_ARATH (e_value=0.0) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT1G66150.1 (e_value=0.0) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942;; (*ITAG) Solyc11g006040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:846032-849515 transcript_region:SL2.40ch11:846032..849515- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00048410g0014.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|568|117; (*GB) gi|76573351|gb|ABA46780.1| (e_value=4e-64) unknown [Solanum tuberosum];; (*SWP) sp|O80800|ACPM2_ARATH (e_value=4e-45) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=3e-46) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc04g015370.2.1 (e_value=1e-67) genomic_reference:SL2.40ch04 gene_region:5576931-5582053 transcript_region:SL2.40ch04:5576931..5582053- go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00024234g0005.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|115371812|gb|ABI96209.1| (e_value=1e-83) ubiquitin-conjugating enzyme [Capsicum annuum];; (*SWP) sp|Q9SDY5|RCE1_ARATH (e_value=2e-81) NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1;; (*TAIR) AT4G36800.2 (e_value=2e-82) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184;; (*ITAG) Solyc06g007500.1.1 (e_value=3e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1495779-1498739 transcript_region:SL2.40ch06:1495779..1498739- go_terms:GO:0019788 functional_description:"Ubiquitin-conjugating enzyme E2 11 (AHRD V1 *-*- UBC11_ARATH); contains Interpro domain(s) IPR015580 RUB1 conjugating enzyme Ubc12 "; GO:0019788 NbS00024234g0014.1 protein AED:0.05 eAED:0.05 QI:58|1|1|1|0.5|0.6|5|337|127; (*GB) gi|358248998|ref|NP_001239976.1| (e_value=1e-37) uncharacterized protein LOC100784958 [Glycine max];; (*SWP) sp|P49206|RS261_ARATH (e_value=1e-34) 40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2;; (*TAIR) AT2G40590.1 (e_value=7e-36) | Symbols: | Ribosomal protein S26e family protein | chr2:16945215-16946345 REVERSE LENGTH=131;; (*ITAG) Solyc04g008810.2.1 (e_value=3e-42) genomic_reference:SL2.40ch04 gene_region:2432009-2434241 transcript_region:SL2.40ch04:2432009..2434241+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00024234g0016.1 protein AED:0.23 eAED:0.23 QI:0|1|0.83|1|1|1|6|0|413; (*GB) gi|1709798|sp|P54778.1|PRS6B_SOLTU (e_value=0.0) RecName: Full=26S protease regulatory subunit 6B homolog;; (*SWP) sp|P54778|PRS6B_SOLTU (e_value=0.0) 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58290.1 (e_value=0.0) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44672378-44677754 transcript_region:SL2.40ch06:44672378..44677754- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00024234g0001.1 protein AED:0.31 eAED:0.31 QI:354|0.75|0.8|1|0.75|0.6|5|419|148; (*GB) gi|350536447|ref|NP_001234247.1| (e_value=2e-106) ubiquitin-conjugating enzyme E2-17 kDa [Solanum lycopersicum];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=6e-108) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=4e-107) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc06g082600.2.1 (e_value=4e-109) genomic_reference:SL2.40ch06 gene_region:44657000-44661486 transcript_region:SL2.40ch06:44657000..44661486- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 **** Q2PYY4_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00015335g0001.1 protein AED:0.09 eAED:0.09 QI:611|0.75|0.88|1|0.25|0.22|9|1553|520; (*GB) gi|291278198|gb|ADD91580.1| (e_value=0.0) calcium ATPase [Nicotiana benthamiana];; (*SWP) sp|O22218|ACA4_ARATH (e_value=0.0) Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1;; (*TAIR) AT2G41560.1 (e_value=0.0) | Symbols: ACA4 | autoinhibited Ca(2+)-ATPase, isoform 4 | chr2:17332256-17337179 REVERSE LENGTH=1030;; (*ITAG) Solyc10g079300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60174290-60177538 transcript_region:SL2.40ch10:60174290..60177538- go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00015335g0012.1 protein AED:0.05 eAED:0.05 QI:233|1|1|1|0.75|0.6|5|383|310; (*GB) gi|224090051|ref|XP_002308922.1| (e_value=4e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=5e-177) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=4e-178) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00045440g0001.1 protein AED:0.44 eAED:0.47 QI:82|0|0.66|1|1|1|3|0|131; (*GB) gi|225426872|ref|XP_002277019.1| (e_value=6e-36) PREDICTED: uncharacterized protein LOC100244522 [Vitis vinifera];; (*TAIR) AT2G32500.1 (e_value=2e-24) | Symbols: | Stress responsive alpha-beta barrel domain protein | chr2:13795371-13797120 REVERSE LENGTH=276;; (*ITAG) Solyc12g056350.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47664443-47668233 transcript_region:SL2.40ch12:47664443..47668233- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00045440g0005.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|131015|sp|P13046.1|PRR1_TOBAC (e_value=1e-161) RecName: Full=Pathogenesis-related protein R major form; AltName: Full=Thaumatin-like protein E22; Flags: Precursor;; (*SWP) sp|P13046|PRR1_TOBAC (e_value=4e-163) Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G11650.1 (e_value=2e-108) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc12g056390.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47677578-47678261 transcript_region:SL2.40ch12:47677578..47678261+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q5DJS5_TOBAC); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00045440g0017.1 protein AED:0.20 eAED:0.20 QI:146|1|1|1|0.77|0.9|10|624|731; (*GB) gi|255537383|ref|XP_002509758.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9C8S9|RH48_ARATH (e_value=0.0) Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1;; (*TAIR) AT1G63250.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:23463284-23466451 REVERSE LENGTH=798;; (*ITAG) Solyc12g056340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47655421-47661297 transcript_region:SL2.40ch12:47655421..47661297+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- A3RR99_RALSO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00045440g0019.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|3|0|328; (*GB) gi|190358875|sp|P81370.2|TLP_ACTDE (e_value=2e-101) RecName: Full=Thaumatin-like protein; AltName: Allergen=Act d 2; Flags: Precursor;; (*SWP) sp|P81370|TLP_ACTDE (e_value=5e-103) Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2;; (*TAIR) AT4G11650.1 (e_value=8e-97) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc12g056360.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47669474-47670163 transcript_region:SL2.40ch12:47669474..47670163+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q93XD4_SAMNI); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00040991g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.66|0.5|0.33|3|0|122; (*GB) gi|359476333|ref|XP_003631821.1| (e_value=3e-45) PREDICTED: desiccation-related protein PCC13-62-like isoform 2 [Vitis vinifera];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=1e-22) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT3G62730.1 (e_value=3e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23208003-23209436 REVERSE LENGTH=317;; (*ITAG) Solyc09g014310.2.1 (e_value=3e-52) genomic_reference:SL2.40ch09 gene_region:5821687-5823749 transcript_region:SL2.40ch09:5821687..5823749+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00040991g0004.1 protein AED:0.31 eAED:0.42 QI:40|0|0|1|0|0|2|0|76; (*GB) gi|147797908|emb|CAN69464.1| (e_value=2e-14) hypothetical protein VITISV_023045 [Vitis vinifera];; (*ITAG) Solyc09g014310.2.1 (e_value=3e-19) genomic_reference:SL2.40ch09 gene_region:5821687-5823749 transcript_region:SL2.40ch09:5821687..5823749+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00049244g0012.1 protein AED:0.35 eAED:0.35 QI:0|0.8|0.66|1|1|0.66|6|0|356; (*GB) gi|225457190|ref|XP_002283945.1| (e_value=0.0) PREDICTED: glycerophosphoryl diester phosphodiesterase [Vitis vinifera];; (*SWP) sp|P09394|GLPQ_ECOLI (e_value=6e-24) Glycerophosphoryl diester phosphodiesterase OS=Escherichia coli (strain K12) GN=glpQ PE=1 SV=2;; (*TAIR) AT1G74210.1 (e_value=0.0) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:27910396-27912785 FORWARD LENGTH=392;; (*ITAG) Solyc06g069470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39611057-39616462 transcript_region:SL2.40ch06:39611057..39616462+ go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein expressed (AHRD V1 ***- Q6AUZ6_ORYSJ); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase "; GO:0006629,GO:0006071 NbS00049244g0005.1 protein AED:0.61 eAED:0.93 QI:0|0|0|0.8|1|1|5|0|113 NbS00049244g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|74 NbS00010775g0008.1 protein AED:0.34 eAED:0.34 QI:693|0.9|0.72|1|0.5|0.54|11|0|632; (*GB) gi|350537183|ref|NP_001234795.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q84MA2|IP5P1_ARATH (e_value=4e-179) Type I inositol 1,4,5-trisphosphate 5-phosphatase 1 OS=Arabidopsis thaliana GN=IP5P1 PE=1 SV=2;; (*TAIR) AT1G71710.2 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr1:26973796-26976747 REVERSE LENGTH=655;; (*ITAG) Solyc00g009110.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8818874-8827274 transcript_region:SL2.40ch00:8818874..8827274+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 *-*- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00008077g0005.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0|0.75|0.66|0.75|4|0|153; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=2e-57) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=2e-36) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=1e-37) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=4e-60) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00008077g0006.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|210; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=9e-66) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=1e-42) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=7e-44) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=2e-68) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00034169g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|501; (*GB) gi|225431575|ref|XP_002276350.1| (e_value=2e-149) PREDICTED: nodulation-signaling pathway 2 protein-like [Vitis vinifera];; (*SWP) sp|Q5NE24|NSP2_MEDTR (e_value=2e-62) Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1;; (*TAIR) AT4G08250.1 (e_value=1e-44) | Symbols: | GRAS family transcription factor | chr4:5196787-5198238 FORWARD LENGTH=483;; (*ITAG) Solyc11g005610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:474688-476166 transcript_region:SL2.40ch11:474688..476166+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00051247g0003.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|1|2|0|215; (*GB) gi|224101453|ref|XP_002312287.1| (e_value=9e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPR0|COQ4_ARATH (e_value=4e-113) Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1;; (*TAIR) AT2G03690.1 (e_value=3e-114) | Symbols: | coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein | chr2:1122122-1123011 REVERSE LENGTH=226;; (*ITAG) Solyc05g012150.2.1 (e_value=1e-132) genomic_reference:SL2.40ch05 gene_region:5352891-5356312 transcript_region:SL2.40ch05:5352891..5356312+ go_terms:GO:0006744 functional_description:"Ubiquinone biosynthesis protein COQ4, mitochondrial (AHRD V1 ***- COQ4_COPC7); contains Interpro domain(s) IPR007715 Coenzyme Q biosynthesis Coq4 "; GO:0006744 NbS00005966g0010.1 protein AED:0.17 eAED:0.17 QI:219|1|1|1|1|1|3|305|330; (*GB) gi|224129534|ref|XP_002328740.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=2e-51) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G02400.1 (e_value=1e-175) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:631413-632449 REVERSE LENGTH=318;; (*ITAG) Solyc01g102730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83218112-83223218 transcript_region:SL2.40ch01:83218112..83223218- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl-CoA reductase family (AHRD V1 ***- D7LQ28_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00005966g0011.1 protein AED:0.18 eAED:0.18 QI:313|1|1|1|1|1|5|431|241; (*GB) gi|297739431|emb|CBI29613.3| (e_value=3e-150) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G49800.1 (e_value=1e-123) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr5:20234771-20236135 REVERSE LENGTH=242;; (*ITAG) Solyc01g102720.2.1 (e_value=5e-166) genomic_reference:SL2.40ch01 gene_region:83215138-83216790 transcript_region:SL2.40ch01:83215138..83216790- functional_description:"START domain containing 10 (Fragment) (AHRD V1 **-- Q52LA1_MOUSE); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00005966g0012.1 protein AED:0.22 eAED:0.22 QI:364|1|0.94|1|0.44|0.68|19|0|948; (*GB) gi|225465318|ref|XP_002269453.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Vitis vinifera];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT1G79620.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc01g102710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83204179-83211382 transcript_region:SL2.40ch01:83204179..83211382+ go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00015656g0002.1 protein AED:0.50 eAED:0.61 QI:0|0|0|0.66|1|1|3|0|87 NbS00012774g0106.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|84 NbS00048759g0005.1 protein AED:0.05 eAED:0.05 QI:59|1|1|1|1|1|6|233|333; (*GB) gi|229890018|dbj|BAH58382.1| (e_value=0.0) AtEB1c-like protein [Nicotiana tabacum];; (*SWP) sp|Q9UPY8|MARE3_HUMAN (e_value=3e-56) Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1;; (*TAIR) AT5G67270.1 (e_value=5e-133) | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding protein 1C | chr5:26840248-26841984 REVERSE LENGTH=329;; (*ITAG) Solyc02g092950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48494061-48497301 transcript_region:SL2.40ch02:48494061..48497301+ go_terms:GO:0051010 functional_description:"Microtubule plus-end binding protein (AHRD V1 **** B2LU37_BRANA); contains Interpro domain(s) IPR001715 Calponin-like actin-binding "; GO:0051010 NbS00004208g0006.1 protein AED:0.41 eAED:0.41 QI:40|0.25|0|1|0.25|0.4|5|0|250; (*GB) gi|225435305|ref|XP_002285123.1| (e_value=2e-104) PREDICTED: yrdC domain-containing protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q499R4|YRDC_RAT (e_value=3e-42) YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1;; (*TAIR) AT5G60590.2 (e_value=6e-101) | Symbols: | DHBP synthase RibB-like alpha/beta domain | chr5:24357066-24358443 FORWARD LENGTH=288;; (*ITAG) Solyc11g069360.1.1 (e_value=1e-132) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51048276-51052497 transcript_region:SL2.40ch11:51048276..51052497+ functional_description:"Sua5/YciO/YrdC/YwlC family protein (AHRD V1 ***- B1L6Z2_KORCO); contains Interpro domain(s) IPR004388 Sua5/YciO/YrdC/YwlC "; NbS00010658g0005.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|2|0|417; (*GB) gi|225437186|ref|XP_002274974.1| (e_value=5e-122) PREDICTED: protein ELC-like [Vitis vinifera];; (*SWP) sp|Q9LHG8|ELC_ARATH (e_value=1e-49) Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1;; (*TAIR) AT2G38830.1 (e_value=5e-75) | Symbols: | Ubiquitin-conjugating enzyme/RWD-like protein | chr2:16225777-16226772 FORWARD LENGTH=331;; (*ITAG) Solyc09g065770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59654262-59655314 transcript_region:SL2.40ch09:59654262..59655314+ go_terms:GO:0043130 functional_description:"Tumor susceptibility protein 101 (Fragment) (AHRD V1 ***- Q09HB7_MACMU); contains Interpro domain(s) IPR008883 Tumour susceptibility gene 101 "; GO:0043130 NbS00010658g0101.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|116 NbS00003432g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|70 NbS00012563g0003.1 protein AED:0.04 eAED:0.04 QI:79|1|1|1|1|1|2|352|138; (*GB) gi|297745649|emb|CBI40860.3| (e_value=4e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G21445.1 (e_value=4e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11424781-11425590 FORWARD LENGTH=154;; (*ITAG) Solyc10g005470.2.1 (e_value=1e-76) genomic_reference:SL2.40ch10 gene_region:349301-350998 transcript_region:SL2.40ch10:349301..350998+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005764g0202.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|256 NbS00016502g0001.1 protein AED:0.16 eAED:0.16 QI:484|0.75|0.8|1|1|0.8|5|29|235; (*GB) gi|225438726|ref|XP_002277782.1| (e_value=1e-65) PREDICTED: uncharacterized protein LOC100242185 [Vitis vinifera];; (*TAIR) AT5G42930.1 (e_value=8e-57) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467;; (*ITAG) Solyc02g090940.2.1 (e_value=6e-81) genomic_reference:SL2.40ch02 gene_region:46982162-46985243 transcript_region:SL2.40ch02:46982162..46985243- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00035959g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|65; (*GB) gi|350539569|ref|NP_001234194.1| (e_value=2e-34) TAGL11 transcription factor [Solanum lycopersicum];; (*SWP) sp|Q38836|AGL11_ARATH (e_value=1e-34) Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1;; (*TAIR) AT4G09960.2 (e_value=6e-36) | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236713-6239409 REVERSE LENGTH=216;; (*ITAG) Solyc11g028020.1.1 (e_value=4e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16517636-16525760 transcript_region:SL2.40ch11:16517636..16525760- go_terms:GO:0005634 functional_description:"Agamous MADS-box transcription factor (AHRD V1 ***- B2CDE2_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00061906g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|187; (*GB) gi|224096942|ref|XP_002310795.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|O23208|ATB40_ARATH (e_value=9e-48) Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3;; (*TAIR) AT4G36740.1 (e_value=7e-49) | Symbols: HB-5, ATHB40, HB40 | homeobox protein 40 | chr4:17314649-17316314 REVERSE LENGTH=216;; (*ITAG) Solyc02g085630.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00016867g0011.1 protein AED:0.11 eAED:0.11 QI:363|0.93|0.94|1|0.81|0.76|17|335|779; (*GB) gi|225461150|ref|XP_002282749.1| (e_value=0.0) PREDICTED: kinesin-3 [Vitis vinifera];; (*SWP) sp|Q07970|ATK1_ARATH (e_value=0.0) Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1;; (*TAIR) AT4G21270.1 (e_value=0.0) | Symbols: ATK1, KATA, KATAP | kinesin 1 | chr4:11329579-11333884 REVERSE LENGTH=793;; (*ITAG) Solyc12g005250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:156785-162394 transcript_region:SL2.40ch12:156785..162394- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9M0X6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00016867g0012.1 protein AED:0.18 eAED:0.22 QI:0|0|0|0.75|0.66|0.25|4|0|329; (*GB) gi|225461142|ref|XP_002280047.1| (e_value=3e-108) PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera];; (*TAIR) AT3G20680.1 (e_value=8e-83) | Symbols: | Domain of unknown function (DUF1995) | chr3:7230147-7231163 REVERSE LENGTH=338;; (*ITAG) Solyc12g005240.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:155128-156093 transcript_region:SL2.40ch12:155128..156093- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00016867g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.66|1|1|1|9|151|847; (*GB) gi|225461122|ref|XP_002279886.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265881 [Vitis vinifera];; (*SWP) sp|Q8CCN5|BCAS3_MOUSE (e_value=3e-26) Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2;; (*TAIR) AT5G54730.1 (e_value=3e-156) | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE LENGTH=763;; (*ITAG) Solyc12g005230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:147174-153831 transcript_region:SL2.40ch12:147174..153831+ functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00016867g0013.1 protein AED:0.36 eAED:0.39 QI:0|0|0|0.5|0|0.5|2|0|171; (*GB) gi|386576422|gb|AFJ12115.1| (e_value=1e-27) glycosyltransferase, partial [Nicotiana tabacum];; (*SWP) sp|Q9FH36|GAUTC_ARATH (e_value=3e-24) Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1;; (*TAIR) AT5G54690.1 (e_value=3e-25) | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase 12 | chr5:22219435-22221769 REVERSE LENGTH=535;; (*ITAG) Solyc07g064050.2.1 (e_value=2e-27) genomic_reference:SL2.40ch07 gene_region:63566361-63569538 transcript_region:SL2.40ch07:63566361..63569538- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00037004g0006.1 protein AED:0.23 eAED:0.23 QI:91|0.75|0.88|0.88|0.62|0.55|9|192|214; (*GB) gi|14278856|gb|AAK31299.1| (e_value=5e-130) Rac-like GTPase 1 [Nicotiana tabacum];; (*SWP) sp|P92978|RAC11_ARATH (e_value=4e-127) Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2;; (*TAIR) AT3G51300.1 (e_value=3e-128) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g062020.2.1 (e_value=3e-132) genomic_reference:SL2.40ch02 gene_region:28182920-28187850 transcript_region:SL2.40ch02:28182920..28187850- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00037004g0009.1 protein AED:0.07 eAED:0.07 QI:245|0.9|0.81|1|1|0.90|11|246|848; (*GB) gi|356538341|ref|XP_003537662.1| (e_value=0.0) PREDICTED: phospholipase D delta-like isoform 3 [Glycine max];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc02g061850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00027455g0004.1 protein AED:0.17 eAED:0.17 QI:371|0.5|0.6|1|0|0|5|0|506; (*GB) gi|356501795|ref|XP_003519709.1| (e_value=0.0) PREDICTED: peptide transporter PTR3-A-like [Glycine max];; (*SWP) sp|Q9FNL7|PTR3_ARATH (e_value=2e-164) Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1;; (*TAIR) AT5G46050.1 (e_value=2e-165) | Symbols: ATPTR3, PTR3 | peptide transporter 3 | chr5:18675062-18679071 REVERSE LENGTH=582;; (*ITAG) Solyc09g090470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65329293-65336164 transcript_region:SL2.40ch09:65329293..65336164+ go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00046713g0003.1 protein AED:0.58 eAED:1.00 QI:47|0|0|0.5|0|0|2|79|19 NbS00021130g0003.1 protein AED:0.13 eAED:0.13 QI:285|1|1|1|0.88|0.9|10|367|693; (*GB) gi|23664357|gb|AAN39330.1| (e_value=0.0) telomere binding protein TBP1 [Nicotiana glutinosa];; (*SWP) sp|Q9C7B1|TRP3_ARATH (e_value=3e-108) Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1;; (*TAIR) AT3G12560.1 (e_value=2e-109) | Symbols: TRFL9, ATTBP2 | TRF-like 9 | chr3:3982272-3984848 REVERSE LENGTH=619;; (*ITAG) Solyc05g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63483986-63489227 transcript_region:SL2.40ch05:63483986..63489227- go_terms:GO:0003691 functional_description:"Telomere binding protein (AHRD V1 **** A0JBS3_SOLLC); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003691 NbS00021130g0008.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|115; (*ITAG) Solyc12g019720.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00021130g0015.1 protein AED:0.05 eAED:0.05 QI:193|1|1|1|0|0.25|4|802|758; (*GB) gi|255566438|ref|XP_002524204.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G15020.2 (e_value=0.0) | Symbols: | hAT transposon superfamily | chr4:8575806-8578372 FORWARD LENGTH=768;; (*ITAG) Solyc08g007470.1.1 (e_value=8e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00021408g0025.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.33|1|0.6|0.66|6|233|446; (*GB) gi|6179388|emb|CAB59900.1| (e_value=0.0) endo-beta-1,4-glucanase [Capsicum annuum];; (*SWP) sp|P05522|GUN1_PERAE (e_value=0.0) Endoglucanase 1 OS=Persea americana GN=CEL1 PE=2 SV=1;; (*TAIR) AT4G02290.1 (e_value=4e-172) | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B13 | chr4:1002654-1005125 REVERSE LENGTH=516;; (*ITAG) Solyc08g083210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62911732-62913828 transcript_region:SL2.40ch08:62911732..62913828+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00021408g0020.1 protein AED:0.29 eAED:0.29 QI:115|1|1|1|0|1|2|502|72; (*GB) gi|356509182|ref|XP_003523330.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100791640 [Glycine max];; (*ITAG) Solyc08g083200.2.1 (e_value=2e-27) genomic_reference:SL2.40ch08 gene_region:62905816-62908610 transcript_region:SL2.40ch08:62905816..62908610+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021408g0013.1 protein AED:0.31 eAED:0.48 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|225426566|ref|XP_002272570.1| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100253094 [Vitis vinifera];; (*TAIR) AT1G50660.1 (e_value=2e-17) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc08g083220.1.1 (e_value=1e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62915588-62916346 transcript_region:SL2.40ch08:62915588..62916346+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021408g0026.1 protein AED:0.11 eAED:0.12 QI:0|1|0.75|1|0.66|0.75|4|310|481; (*GB) gi|255555759|ref|XP_002518915.1| (e_value=0.0) valacyclovir hydrolase, putative [Ricinus communis];; (*TAIR) AT4G24140.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12530032-12533664 REVERSE LENGTH=498;; (*ITAG) Solyc08g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3003194-3008230 transcript_region:SL2.40ch08:3003194..3008230- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M8X4_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00021408g0028.1 protein AED:0.14 eAED:0.14 QI:50|0.33|0.25|1|0.33|0.25|4|0|398; (*GB) gi|255555773|ref|XP_002518922.1| (e_value=3e-90) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01110.2 (e_value=4e-75) | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54494 FORWARD LENGTH=527;; (*ITAG) Solyc08g083240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62923263-62925544 transcript_region:SL2.40ch08:62923263..62925544- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00021408g0027.1 protein AED:0.37 eAED:0.44 QI:0|0|0|0.5|0|0|4|0|219; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-26) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc06g050740.1.1 (e_value=9e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30014138-30015077 transcript_region:SL2.40ch06:30014138..30015077+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00051926g0003.1 protein AED:0.05 eAED:0.07 QI:0|0.33|0.25|0.5|1|1|4|0|437; (*GB) gi|359482002|ref|XP_002276783.2| (e_value=2e-133) PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5-like [Vitis vinifera];; (*SWP) sp|Q9SJN0|ABI5_ARATH (e_value=2e-113) Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1;; (*TAIR) AT2G36270.1 (e_value=1e-114) | Symbols: ABI5, GIA1 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:15204980-15206571 REVERSE LENGTH=442;; (*ITAG) Solyc09g009490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2912187-2914306 transcript_region:SL2.40ch09:2912187..2914306- go_terms:GO:0016563 functional_description:"Bzip transcription factor (AHRD V1 *-** Q00M78_SOYBN); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563 NbS00029968g0013.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|0.5|0.66|3|0|179; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=4e-42) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=4e-39) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=3e-40) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011860.1.1 (e_value=2e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4274482-4274790 transcript_region:SL2.40ch04:4274482..4274790+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00029968g0005.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|356535468|ref|XP_003536267.1| (e_value=1e-39) PREDICTED: monothiol glutaredoxin-S6-like [Glycine max];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=4e-39) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=3e-40) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=2e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00029968g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=8e-45) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=9e-44) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=7e-45) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=1e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00029968g0006.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=1e-44) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=1e-42) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=8e-44) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=1e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00029968g0109.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|95 NbS00029968g0110.1 protein AED:0.14 eAED:0.21 QI:0|0|0|1|1|1|2|0|362 NbS00029968g0104.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|255 NbS00029968g0115.1 protein AED:0.31 eAED:0.31 QI:169|0.33|0.5|1|0.33|0.25|4|0|284 NbS00029968g0114.1 protein AED:0.32 eAED:0.32 QI:120|1|1|1|1|1|10|345|334 NbS00029968g0102.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|99 NbS00029968g0202.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|131 NbS00029968g0207.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|499 NbS00029968g0209.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|0.5|2|0|482 NbS00029968g0203.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|432 NbS00017470g0002.1 protein AED:0.81 eAED:0.81 QI:6|0|0|0.2|1|1|5|0|177; (*GB) gi|224064015|ref|XP_002301349.1| (e_value=2e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q109G2|RH12_ORYSJ (e_value=8e-74) DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp. japonica GN=Os10g0503700 PE=2 SV=2;; (*TAIR) AT4G00660.1 (e_value=8e-71) | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505;; (*ITAG) Solyc10g017530.2.1 (e_value=3e-77) genomic_reference:SL2.40ch10 gene_region:5410144-5419713 transcript_region:SL2.40ch10:5410144..5419713+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA Helicase (AHRD V1 **** Q7PDT0_PLAYO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00021030g0010.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0.25|4|0|349; (*GB) gi|334902911|gb|AEH25587.1| (e_value=1e-31) transposase [Solanum demissum];; (*ITAG) Solyc04g054620.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:52016680-52020322 transcript_region:SL2.40ch04:52016680..52020322+ go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00021030g0008.1 protein AED:0.23 eAED:0.24 QI:0|0.33|0.75|1|1|1|4|268|211; (*GB) gi|15778152|dbj|BAB68526.1| (e_value=9e-144) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|O49995|1433B_TOBAC (e_value=9e-145) 14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=5e-122) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc12g057110.2.1 (e_value=2e-137) genomic_reference:SL2.40ch12 gene_region:48549454-48552229 transcript_region:SL2.40ch12:48549454..48552229+ go_terms:GO:0050815 functional_description:"14-3-3 (Fragment) (AHRD V1 ***- D3TIB7_MANIN); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00021030g0009.1 protein AED:0.69 eAED:0.70 QI:0|0|0|0.33|0|0.33|3|0|88 NbS00042158g0004.1 protein AED:0.12 eAED:0.12 QI:70|1|1|1|1|1|2|265|365; (*GB) gi|356501168|ref|XP_003519400.1| (e_value=3e-82) PREDICTED: uncharacterized protein LOC100785042 [Glycine max];; (*TAIR) AT3G11150.1 (e_value=1e-59) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:3492986-3494599 REVERSE LENGTH=371;; (*ITAG) Solyc06g051360.2.1 (e_value=6e-134) genomic_reference:SL2.40ch06 gene_region:31166305-31171405 transcript_region:SL2.40ch06:31166305..31171405- functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9HHR0_POPTR)"; NbS00041490g0004.1 protein AED:0.49 eAED:0.49 QI:0|1|0|1|1|0.5|2|0|65; (*ITAG) Solyc03g098660.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:54407060-54408908 transcript_region:SL2.40ch03:54407060..54408908+ functional_description:"FIP1 (AHRD V1 **-- B6TFD3_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00041490g0005.1 protein AED:0.30 eAED:0.30 QI:519|0.71|0.62|1|0.14|0.25|8|270|138; (*GB) gi|224141897|ref|XP_002324297.1| (e_value=3e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25360.2 (e_value=1e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc06g068120.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:38606042-38610759 transcript_region:SL2.40ch06:38606042..38610759+ functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00049465g0012.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0|0.66|1|1|3|0|249; (*GB) gi|225462062|ref|XP_002269575.1| (e_value=4e-98) PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera];; (*TAIR) AT3G13290.1 (e_value=8e-87) | Symbols: VCR | varicose-related | chr3:4297529-4303113 FORWARD LENGTH=1340;; (*ITAG) Solyc07g065950.2.1 (e_value=5e-122) genomic_reference:SL2.40ch07 gene_region:64749640-64759288 transcript_region:SL2.40ch07:64749640..64759288+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00049465g0005.1 protein AED:0.17 eAED:0.24 QI:0|0|0|1|1|1|3|0|246; (*GB) gi|255548950|ref|XP_002515531.1| (e_value=2e-60) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9MA95|PP214_ARATH (e_value=7e-20) Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2;; (*TAIR) AT3G05240.1 (e_value=5e-21) | Symbols: MEF19 | mitochondrial editing factor 19 | chr3:1493684-1495381 REVERSE LENGTH=565;; (*ITAG) Solyc06g066080.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37811983-37813806 transcript_region:SL2.40ch06:37811983..37813806- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00049465g0011.1 protein AED:0.15 eAED:0.17 QI:152|0.84|0.85|1|0.61|0.71|14|565|434; (*GB) gi|225430261|ref|XP_002285072.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis vinifera];; (*SWP) sp|Q9LFN6|RH56_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2;; (*TAIR) AT5G11170.1 (e_value=0.0) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3553334-3556646 FORWARD LENGTH=427;; (*ITAG) Solyc08g061000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43548025-43554331 transcript_region:SL2.40ch08:43548025..43554331- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q1HR75_AEDAE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00049465g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|357478059|ref|XP_003609315.1| (e_value=5e-78) Solute carrier family 35 member C2 [Medicago truncatula];; (*SWP) sp|Q9LFN3|PT511_ARATH (e_value=1e-70) Probable sugar phosphate/phosphate translocator At5g11230 OS=Arabidopsis thaliana GN=At5g11230 PE=2 SV=1;; (*TAIR) AT5G11230.1 (e_value=1e-71) | Symbols: | Nucleotide-sugar transporter family protein | chr5:3580562-3581617 FORWARD LENGTH=351;; (*ITAG) Solyc08g060940.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:43005135-43006190 transcript_region:SL2.40ch08:43005135..43006190- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00040343g0004.1 protein AED:0.26 eAED:0.26 QI:417|1|0.83|1|0.4|0.66|6|0|532; (*GB) gi|48209969|gb|AAT40532.1| (e_value=0.0) hydrolase, alpha/beta fold family protein [Solanum demissum];; (*TAIR) AT5G02970.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:695391-697412 FORWARD LENGTH=514;; (*ITAG) Solyc11g072440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52697855-52701602 transcript_region:SL2.40ch11:52697855..52701602- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- Q6L459_SOLDE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00014630g0001.1 protein AED:0.07 eAED:0.07 QI:82|1|1|1|0.8|0.66|6|193|515; (*GB) gi|383212260|dbj|BAM09000.1| (e_value=0.0) cytokinin hydroxylase-like [Solanum lycopersicum];; (*SWP) sp|Q9FF18|C7351_ARATH (e_value=0.0) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A1 PE=1 SV=1;; (*TAIR) AT5G38450.1 (e_value=0.0) | Symbols: CYP735A1 | cytochrome P450, family 735, subfamily A, polypeptide 1 | chr5:15394000-15397233 REVERSE LENGTH=518;; (*ITAG) Solyc02g085880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43245949-43247983 transcript_region:SL2.40ch02:43245949..43247983+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00015625g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|170 NbS00030829g0019.1 protein AED:0.20 eAED:0.21 QI:0|0.62|0.77|1|0.25|0.44|9|154|454; (*GB) gi|5734585|emb|CAB52796.1| (e_value=0.0) putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=2e-62) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT1G07180.1 (e_value=0.0) | Symbols: ATNDI1, NDA1 | alternative NAD(P)H dehydrogenase 1 | chr1:2204414-2206773 FORWARD LENGTH=510;; (*ITAG) Solyc06g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1218194-1222072 transcript_region:SL2.40ch06:1218194..1222072- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00030829g0004.1 protein AED:0.65 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|125; (*GB) gi|12875|emb|CAA27743.1| (e_value=4e-17) URF-1 [Citrullus lanatus];; (*SWP) sp|P08834|NU1M_CITLA (e_value=2e-17) NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1;; (*ITAG) Solyc00g118690.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:16399967-16400227 transcript_region:SL2.40ch00:16399967..16400227+ go_terms:GO:0016020 functional_description:"NADH-ubiquinone oxidoreductase chain 1 (AHRD V1 ***- Q5MA12_TOBAC); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00030829g0021.1 protein AED:0.25 eAED:0.71 QI:0|0|0|1|0|0.25|4|0|126; (*GB) gi|57013928|ref|YP_173401.1| (e_value=3e-16) hypothetical protein NitaMp055 [Nicotiana tabacum];; (*ITAG) Solyc00g023600.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12145018-12145284 transcript_region:SL2.40ch00:12145018..12145284+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030829g0017.1 protein AED:0.43 eAED:0.49 QI:0|0|0|1|0|0|2|0|191; (*GB) gi|57013911|ref|YP_173384.1| (e_value=3e-50) hypothetical protein NitaMp038 [Nicotiana tabacum]; NbS00030829g0016.1 protein AED:0.42 eAED:0.74 QI:0|0|0|1|0|0|5|0|163; (*GB) gi|391348947|ref|YP_006460178.1| (e_value=3e-28) ribosomal protein subunit S4 (mitochondrion) [Mimulus guttatus];; (*SWP) sp|Q31708|RT04_ARATH (e_value=7e-15) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=2e-14) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=3e-32) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00030829g0015.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|0|0|3|0|159; (*GB) gi|57013932|ref|YP_173405.1| (e_value=2e-48) hypothetical protein NitaMp061 [Nicotiana tabacum]; NbS00030829g0018.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0|2|0|108 NbS00032625g0012.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|1|2|124|146; (*ITAG) Solyc09g091390.2.1 (e_value=7e-18) genomic_reference:SL2.40ch09 gene_region:66023489-66024501 transcript_region:SL2.40ch09:66023489..66024501- functional_description:"Unknown Protein (AHRD V1)"; NbS00032625g0001.1 protein AED:0.13 eAED:0.13 QI:1267|0.5|0.33|1|1|1|3|0|318; (*GB) gi|224053459|ref|XP_002297826.1| (e_value=4e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT1G04650.1 (e_value=4e-78) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:1294893-1298903 REVERSE LENGTH=997;; (*ITAG) Solyc09g091370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66013727-66018641 transcript_region:SL2.40ch09:66013727..66018641- functional_description:"At1g04650-like protein (Fragment) (AHRD V1 *-*- C0JC61_9BRAS)"; NbS00032625g0003.1 protein AED:0.37 eAED:0.46 QI:0|1|0.5|1|0|0|2|191|160; (*GB) gi|255577960|ref|XP_002529852.1| (e_value=8e-35) Serine/threonine-protein kinase, putative [Ricinus communis];; (*TAIR) AT2G20495.1 (e_value=3e-32) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:8833180-8835034 FORWARD LENGTH=282;; (*ITAG) Solyc06g008350.2.1 (e_value=2e-43) genomic_reference:SL2.40ch06 gene_region:2221135-2228530 transcript_region:SL2.40ch06:2221135..2228530+ functional_description:"Serine/threonine-protein kinase 19 (AHRD V1 ***- B6TW02_MAIZE); contains Interpro domain(s) IPR018865 Serine-threonine protein kinase 19 "; NbS00032625g0007.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.25|1|1|4|0|178 NbS00034049g0005.1 protein AED:0.29 eAED:0.29 QI:241|0.8|0.66|1|0.6|0.66|6|0|459; (*GB) gi|359486048|ref|XP_002270184.2| (e_value=5e-152) PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WVV0|PPR31_ARATH (e_value=7e-128) Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1;; (*TAIR) AT1G10910.1 (e_value=5e-129) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3639908-3643974 FORWARD LENGTH=664;; (*ITAG) Solyc11g040250.1.1 (e_value=4e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:30324901-30325215 transcript_region:SL2.40ch11:30324901..30325215+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00053868g0008.1 protein AED:0.00 eAED:0.00 QI:103|1|1|1|0.75|0.8|5|77|198; (*GB) gi|388509254|gb|AFK42693.1| (e_value=7e-45) unknown [Lotus japonicus];; (*SWP) sp|P93788|REMO_SOLTU (e_value=2e-42) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=6e-41) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc03g025850.2.1 (e_value=4e-43) genomic_reference:SL2.40ch03 gene_region:7627656-7630095 transcript_region:SL2.40ch03:7627656..7630095+ go_terms:GO:0003677 functional_description:"Remorin 1 (AHRD V1 ***- Q9XEX8_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00053868g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|0.8|1|1|5|0|200; (*GB) gi|225426860|ref|XP_002283482.1| (e_value=1e-87) PREDICTED: pollen-specific protein SF3 [Vitis vinifera];; (*SWP) sp|P29675|SF3_HELAN (e_value=5e-57) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT2G39900.1 (e_value=2e-82) | Symbols: | GATA type zinc finger transcription factor family protein | chr2:16659136-16660267 FORWARD LENGTH=200;; (*ITAG) Solyc08g080740.2.1 (e_value=2e-121) genomic_reference:SL2.40ch08 gene_region:61112325-61114470 transcript_region:SL2.40ch08:61112325..61114470- go_terms:GO:0008270 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- B5XFL5_SALSA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00045450g0001.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|0.66|1|1|3|0|315; (*GB) gi|255569197|ref|XP_002525567.1| (e_value=4e-131) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02550.3 (e_value=2e-113) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:1120622-1121674 REVERSE LENGTH=322;; (*ITAG) Solyc01g097250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79925577-79928989 transcript_region:SL2.40ch01:79925577..79928989- functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 *--- Q9FFJ8_ARATH)"; NbS00030881g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|1|0.66|3|0|496; (*GB) gi|147765975|emb|CAN63262.1| (e_value=0.0) hypothetical protein VITISV_036939 [Vitis vinifera];; (*SWP) sp|Q94CC0|Y5994_ARATH (e_value=3e-175) Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1;; (*TAIR) AT4G24330.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1682) | chr4:12603848-12606229 REVERSE LENGTH=478;; (*ITAG) Solyc01g103680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83987525-83992704 transcript_region:SL2.40ch01:83987525..83992704- functional_description:"Coiled-coil domain containing 47 (AHRD V1 ***- Q0VBU4_MOUSE); contains Interpro domain(s) IPR012879 Protein of unknown function DUF1682 "; NbS00030881g0008.1 protein AED:0.21 eAED:0.23 QI:132|0.84|0.78|1|0.84|0.92|14|0|654; (*GB) gi|225448142|ref|XP_002263770.1| (e_value=0.0) PREDICTED: embryogenesis-associated protein EMB8 [Vitis vinifera];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=7e-59) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT1G34340.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:12530936-12534031 FORWARD LENGTH=530;; (*ITAG) Solyc01g103670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83978628-83987203 transcript_region:SL2.40ch01:83978628..83987203+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA)"; GO:0003824 NbS00004435g0006.1 protein AED:0.00 eAED:0.00 QI:171|1|1|1|1|1|3|0|92; (*GB) gi|147787408|emb|CAN77816.1| (e_value=1e-51) hypothetical protein VITISV_020659 [Vitis vinifera];; (*SWP) sp|Q8H0W2|HDA9_ARATH (e_value=9e-53) Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1;; (*TAIR) AT3G44680.1 (e_value=7e-54) | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426;; (*ITAG) Solyc11g067020.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49871976-49879313 transcript_region:SL2.40ch11:49871976..49879313+ go_terms:GO:0005634,GO:0016575 functional_description:"Histone deacetylase (AHRD V1 ***- B9GGG8_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0005634,GO:0016575 NbS00004435g0007.1 protein AED:0.09 eAED:0.14 QI:0|0.5|0.66|1|0|0.33|3|503|80; (*GB) gi|356539300|ref|XP_003538137.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100305574 [Glycine max];; (*TAIR) AT4G21105.1 (e_value=2e-32) | Symbols: | cytochrome-c oxidases;electron carriers | chr4:11266273-11266724 FORWARD LENGTH=68; NbS00004435g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|19|105; (*GB) gi|359479384|ref|XP_002270071.2| (e_value=2e-64) PREDICTED: histone deacetylase 9-like [Vitis vinifera];; (*SWP) sp|Q8H0W2|HDA9_ARATH (e_value=4e-60) Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1;; (*TAIR) AT3G44680.1 (e_value=3e-61) | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426;; (*ITAG) Solyc11g067020.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49871976-49879313 transcript_region:SL2.40ch11:49871976..49879313+ go_terms:GO:0005634,GO:0016575 functional_description:"Histone deacetylase (AHRD V1 ***- B9GGG8_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0005634,GO:0016575 NbS00025272g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|951|368; (*GB) gi|6862928|gb|AAF30317.1|AC018907_17 (e_value=2e-51) hypothetical protein [Arabidopsis thaliana];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=6e-53) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=5e-54) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc12g099550.1.1 (e_value=8e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00023258g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.64|0.96|1|1|25|0|2884; (*GB) gi|359476827|ref|XP_003631895.1| (e_value=0.0) PREDICTED: transformation/transcription domain-associated protein [Vitis vinifera];; (*SWP) sp|P38811|TRA1_YEAST (e_value=6e-132) Transcription-associated protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRA1 PE=1 SV=1;; (*TAIR) AT2G17930.1 (e_value=0.0) | Symbols: | Phosphatidylinositol 3- and 4-kinase family protein with FAT domain | chr2:7784455-7802230 REVERSE LENGTH=3858;; (*ITAG) Solyc02g083900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00023258g0006.1 protein AED:0.04 eAED:0.04 QI:122|1|0.66|1|1|1|3|0|342; (*GB) gi|224133706|ref|XP_002327660.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66230.1 (e_value=6e-69) | Symbols: | Chalcone-flavanone isomerase family protein | chr5:26462704-26463873 FORWARD LENGTH=329;; (*ITAG) Solyc02g083890.2.1 (e_value=1e-149) genomic_reference:SL2.40ch02 gene_region:41718943-41720379 transcript_region:SL2.40ch02:41718943..41720379+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031316g0005.1 protein AED:0.13 eAED:0.13 QI:258|1|1|1|0.87|0.77|9|154|465; (*GB) gi|212275011|ref|NP_001130417.1| (e_value=0.0) uncharacterized protein LOC100191513 [Zea mays];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=5e-142) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT1G21400.1 (e_value=0.0) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472;; (*ITAG) Solyc04g063350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54581013-54588153 transcript_region:SL2.40ch04:54581013..54588153+ go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbC25130936g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|0.5|0.66|3|0|241; (*GB) gi|297740371|emb|CBI30553.3| (e_value=9e-74) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=2e-43) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=1e-130) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00005703g0013.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|13|162|652; (*GB) gi|350537769|ref|NP_001234565.1| (e_value=0.0) sulfate transporter 1 [Solanum lycopersicum];; (*SWP) sp|Q9FEP7|SUT13_ARATH (e_value=0.0) Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=0.0) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc10g047170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35425026-35428142 transcript_region:SL2.40ch10:35425026..35428142- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00005703g0016.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0|1|0.33|0|4|0|154; (*ITAG) Solyc07g015850.1.1 (e_value=8e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00005703g0019.1 protein AED:0.03 eAED:0.05 QI:0|0.75|0.4|1|0.75|0.6|5|0|244; (*GB) gi|380853852|gb|AFE88233.1| (e_value=1e-129) hydroxyacyl-ACP dehydrase [Nicotiana tabacum];; (*SWP) sp|Q3MH14|FABZ_ANAVT (e_value=9e-51) (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2;; (*TAIR) AT5G10160.1 (e_value=5e-112) | Symbols: | Thioesterase superfamily protein | chr5:3185819-3187159 FORWARD LENGTH=219;; (*ITAG) Solyc01g105060.2.1 (e_value=1e-134) genomic_reference:SL2.40ch01 gene_region:85094784-85097712 transcript_region:SL2.40ch01:85094784..85097712- go_terms:GO:0005737 functional_description:"(3R)-hydroxymyristoyl- (AHRD V1 ***- Q9LX13_ARATH); contains Interpro domain(s) IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ "; GO:0005737 NbS00005703g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|0.33|0|4|481|180; (*GB) gi|49204581|dbj|BAD24657.1| (e_value=7e-46) xylogen protein 1 [Zinnia elegans];; (*SWP) sp|Q8VYI9|NLTL5_ARATH (e_value=2e-38) Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1;; (*TAIR) AT5G64080.2 (e_value=1e-39) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:25645475-25646638 REVERSE LENGTH=178;; (*ITAG) Solyc01g105010.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00005703g0009.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|150; (*GB) gi|224140483|ref|XP_002323612.1| (e_value=4e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=5e-41) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT5G01610.1 (e_value=4e-42) | Symbols: | Protein of unknown function, DUF538 | chr5:231075-231994 FORWARD LENGTH=170;; (*ITAG) Solyc10g085300.1.1 (e_value=1e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63850620-63853872 transcript_region:SL2.40ch10:63850620..63853872- functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00027275g0003.1 protein AED:0.00 eAED:0.00 QI:210|1|1|1|1|1|2|453|81; (*ITAG) Solyc07g021340.2.1 (e_value=4e-23) genomic_reference:SL2.40ch07 gene_region:16969514-16970157 transcript_region:SL2.40ch07:16969514..16970157+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010563g0009.1 protein AED:0.07 eAED:0.12 QI:913|0.83|0.71|1|0.5|0.57|7|0|273; (*GB) gi|225445460|ref|XP_002285108.1| (e_value=2e-84) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q9M2F9|RH52_ARATH (e_value=7e-80) DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1;; (*TAIR) AT3G58570.1 (e_value=5e-81) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21657099-21660352 FORWARD LENGTH=646;; (*ITAG) Solyc01g005960.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00016836g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|880; (*GB) gi|359481824|ref|XP_002283010.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940-like [Vitis vinifera];; (*SWP) sp|Q9FL51|Y5694_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1;; (*TAIR) AT5G06940.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr5:2148078-2150771 REVERSE LENGTH=872;; (*ITAG) Solyc03g062660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29060754-29063525 transcript_region:SL2.40ch03:29060754..29063525- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00016836g0010.1 protein AED:0.73 eAED:0.85 QI:0|0|0|0.6|0.25|0|5|0|188 NbS00016836g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|98 NbS00002314g0005.1 protein AED:0.17 eAED:0.17 QI:255|1|1|1|1|1|6|329|166; (*GB) gi|82623399|gb|ABB87114.1| (e_value=9e-76) cytochrome c oxidase family protein-like [Solanum tuberosum];; (*SWP) sp|Q9SSB8|CX5B2_ARATH (e_value=6e-61) Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1;; (*TAIR) AT1G80230.1 (e_value=5e-62) | Symbols: | Rubredoxin-like superfamily protein | chr1:30169784-30170999 REVERSE LENGTH=171;; (*ITAG) Solyc06g067940.2.1 (e_value=2e-78) genomic_reference:SL2.40ch06 gene_region:38499801-38503089 transcript_region:SL2.40ch06:38499801..38503089+ go_terms:GO:0050897,GO:0008270 functional_description:"Cytochrome c oxidase subunit Vb (AHRD V1 ***- Q0KKQ8_PEA); contains Interpro domain(s) IPR002124 Cytochrome c oxidase, subunit Vb "; GO:0050897,GO:0008270 NbS00050794g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|171854681|dbj|BAG16530.1| (e_value=3e-49) putative phosphate-induced protein [Capsicum chinense];; (*TAIR) AT5G64260.1 (e_value=1e-37) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc01g105410.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:85348461-85349698 transcript_region:SL2.40ch01:85348461..85349698+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00013320g0008.1 protein AED:0.19 eAED:0.25 QI:82|0.66|0.69|1|0.75|0.76|13|0|616; (*GB) gi|297734868|emb|CBI17102.3| (e_value=5e-160) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G22820.2 (e_value=1e-111) | Symbols: | ARM repeat superfamily protein | chr5:7623886-7626943 REVERSE LENGTH=534;; (*ITAG) Solyc06g074690.2.1 (e_value=5e-171) genomic_reference:SL2.40ch06 gene_region:42609816-42616109 transcript_region:SL2.40ch06:42609816..42616109- functional_description:"Genomic DNA chromosome 5 P1 clone MRN17 (AHRD V1 ***- Q9FFC5_ARATH)"; NbS00013320g0009.1 protein AED:0.09 eAED:0.09 QI:506|1|1|1|1|1|6|569|718; (*GB) gi|225436373|ref|XP_002271001.1| (e_value=0.0) PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q9FYC7|PDAT2_ARATH (e_value=0.0) Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1;; (*TAIR) AT3G44830.1 (e_value=0.0) | Symbols: | Lecithin:cholesterol acyltransferase family protein | chr3:16368890-16372356 FORWARD LENGTH=665;; (*ITAG) Solyc06g074680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42605207-42608333 transcript_region:SL2.40ch06:42605207..42608333+ go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** B3LPN2_YEAS1); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00015562g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|0.75|0.8|5|0|335; (*GB) gi|255553843|ref|XP_002517962.1| (e_value=2e-123) Peroxisomal membrane protein, putative [Ricinus communis];; (*SWP) sp|Q2KIY1|PXMP2_BOVIN (e_value=3e-12) Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3;; (*TAIR) AT4G03410.2 (e_value=5e-120) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:1501907-1503503 FORWARD LENGTH=361;; (*ITAG) Solyc10g008500.2.1 (e_value=4e-164) genomic_reference:SL2.40ch10 gene_region:2620774-2624112 transcript_region:SL2.40ch10:2620774..2624112- go_terms:GO:0016021 functional_description:"Mpv17 (AHRD V1 *--- C1BTV5_9MAXI); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00035893g0001.1 protein AED:0.17 eAED:0.18 QI:176|0|0|1|1|1|2|0|90; (*GB) gi|224137706|ref|XP_002327192.1| (e_value=1e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q948Z4|SNAK1_SOLTU (e_value=1e-26) Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1;; (*TAIR) AT2G39540.1 (e_value=1e-24) | Symbols: | Gibberellin-regulated family protein | chr2:16500866-16501241 FORWARD LENGTH=87;; (*ITAG) Solyc08g005620.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:486408-487167 transcript_region:SL2.40ch08:486408..487167+ functional_description:"Gibberellin-regulated family protein (AHRD V1 **-- D7L2S3_ARALY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00011133g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|273; (*GB) gi|91107165|gb|ABE11608.1| (e_value=0.0) xyloglucan endo-transglycosylase precursor [Solanum chacoense];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=3e-156) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G14130.1 (e_value=5e-149) | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase 15 | chr4:8137161-8138196 REVERSE LENGTH=289;; (*ITAG) Solyc09g092520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66925770-66927844 transcript_region:SL2.40ch09:66925770..66927844- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 8 (AHRD V1 **** C0IRG7_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00004095g0010.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|433; (*GB) gi|350538853|ref|NP_001234362.1| (e_value=2e-176) GAMYB-like2 [Solanum lycopersicum];; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=4e-78) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G11440.1 (e_value=3e-66) | Symbols: ATMYB65, MYB65 | myb domain protein 65 | chr3:3603056-3604929 FORWARD LENGTH=553;; (*ITAG) Solyc06g073640.2.1 (e_value=4e-179) genomic_reference:SL2.40ch06 gene_region:41820787-41825280 transcript_region:SL2.40ch06:41820787..41825280- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00004095g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.75|1|0.66|0.5|4|306|440; (*GB) gi|222820580|gb|ACM67640.1| (e_value=0.0) BTB-POZ and MATH domain protein [Capsicum annuum];; (*SWP) sp|Q9SRV1|BPM4_ARATH (e_value=0.0) BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1;; (*TAIR) AT3G03740.1 (e_value=0.0) | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:937106-939807 REVERSE LENGTH=465;; (*ITAG) Solyc11g072070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52429101-52436697 transcript_region:SL2.40ch11:52429101..52436697- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00022162g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|145; (*GB) gi|225445846|ref|XP_002275706.1| (e_value=2e-61) PREDICTED: protein YIF1B [Vitis vinifera];; (*SWP) sp|Q6PEC3|YIF1B_RAT (e_value=3e-15) Protein YIF1B OS=Rattus norvegicus GN=Yif1b PE=2 SV=2;; (*TAIR) AT3G59500.1 (e_value=6e-59) | Symbols: | Integral membrane HRF1 family protein | chr3:21987110-21988169 FORWARD LENGTH=269;; (*ITAG) Solyc07g005670.1.1 (e_value=2e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:551474-553674 transcript_region:SL2.40ch07:551474..553674- go_terms:GO:0005515 functional_description:"Transport protein YIF1 (AHRD V1 **-- C0SA11_PARBP); contains Interpro domain(s) IPR005578 Hrf1 "; GO:0005515 NbS00046671g0006.1 protein AED:0.01 eAED:0.01 QI:290|1|1|1|0.8|0.66|6|454|496; (*GB) gi|225444688|ref|XP_002277730.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247308 [Vitis vinifera];; (*TAIR) AT5G20680.2 (e_value=0.0) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6999221-7001596 FORWARD LENGTH=533;; (*ITAG) Solyc07g042020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52206610-52210531 transcript_region:SL2.40ch07:52206610..52210531+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00046671g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|852; (*GB) gi|225464799|ref|XP_002269136.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Vitis vinifera];; (*SWP) sp|Q8GZA6|PP113_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1;; (*TAIR) AT1G71210.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26838850-26841489 REVERSE LENGTH=879;; (*ITAG) Solyc07g042030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52221117-52223807 transcript_region:SL2.40ch07:52221117..52223807- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014022g0005.1 protein AED:0.18 eAED:0.20 QI:0|0.75|0.77|1|0.62|0.55|9|484|209; (*GB) gi|255566831|ref|XP_002524399.1| (e_value=3e-112) Coiled-coil domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q5EA37|CC130_BOVIN (e_value=1e-53) Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1;; (*TAIR) AT1G25682.1 (e_value=2e-103) | Symbols: | Family of unknown function (DUF572) | chr1:9002532-9004550 REVERSE LENGTH=310;; (*ITAG) Solyc05g009910.2.1 (e_value=5e-122) genomic_reference:SL2.40ch05 gene_region:4131350-4135256 transcript_region:SL2.40ch05:4131350..4135256- go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 94 (AHRD V1 ***- B6TAZ7_MAIZE); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; GO:0005515 NbS00007993g0013.1 protein AED:0.03 eAED:0.03 QI:291|1|1|1|0.66|0.75|4|222|151; (*GB) gi|224069908|ref|XP_002303082.1| (e_value=5e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48500.1 (e_value=4e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167;; (*ITAG) Solyc06g083080.2.1 (e_value=2e-50) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007993g0011.1 protein AED:0.14 eAED:0.14 QI:183|1|1|1|0.75|0.6|5|230|153; (*GB) gi|224069908|ref|XP_002303082.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48500.1 (e_value=5e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167;; (*ITAG) Solyc06g083080.2.1 (e_value=2e-59) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007993g0012.1 protein AED:0.36 eAED:0.36 QI:110|1|1|1|0.75|0.8|5|486|242; (*GB) gi|147845024|emb|CAN82702.1| (e_value=4e-101) hypothetical protein VITISV_026468 [Vitis vinifera];; (*TAIR) AT3G07440.1 (e_value=3e-94) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:2381411-2382902 FORWARD LENGTH=235;; (*ITAG) Solyc09g058990.2.1 (e_value=1e-144) genomic_reference:SL2.40ch09 gene_region:48354604-48362454 transcript_region:SL2.40ch09:48354604..48362454- functional_description:"Unknown Protein (AHRD V1)"; NbS00007993g0111.1 protein AED:0.24 eAED:0.25 QI:196|0.62|0.66|1|0.5|0.77|9|247|406 NbS00007993g0101.1 protein AED:0.00 eAED:0.00 QI:0|0|0.5|1|0|0.5|2|62|225 NbS00007993g0102.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|92 NbS00007993g0201.1 protein AED:0.79 eAED:0.91 QI:0|0|0|0.4|1|1|5|0|84 NbS00007993g0203.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|0|0|3|0|104 NbS00007993g0316.1 protein AED:0.13 eAED:0.13 QI:82|1|1|1|1|1|2|245|213 NbS00007993g0315.1 protein AED:0.21 eAED:0.21 QI:95|1|0.87|1|1|1|8|0|614 NbS00007993g0305.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|261 NbS00007993g0317.1 protein AED:0.57 eAED:0.62 QI:0|1|0|1|1|1|2|0|238 NbS00007993g0322.1 protein AED:0.48 eAED:0.68 QI:0|0.16|0|0.28|1|1|7|0|500 NbS00056647g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|344|630; (*GB) gi|124367|sp|P09342.1|ILVB1_TOBAC (e_value=0.0) RecName: Full=Acetolactate synthase 1, chloroplastic; AltName: Full=ALS I; AltName: Full=Acetohydroxy-acid synthase I; AltName: Full=Acetolactate synthase I; Flags: Precursor;; (*SWP) sp|P09342|ILVB1_TOBAC (e_value=0.0) Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1;; (*TAIR) AT3G48560.1 (e_value=0.0) | Symbols: CSR1, ALS, AHAS, TZP5, IMR1 | chlorsulfuron/imidazolinone resistant 1 | chr3:18001530-18003542 REVERSE LENGTH=670;; (*ITAG) Solyc03g044330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:12823169-12825148 transcript_region:SL2.40ch03:12823169..12825148- go_terms:GO:0003984 functional_description:"Acetolactate synthase (AHRD V1 **** D7RPJ7_SOLTU); contains Interpro domain(s) IPR012846 Acetolactate synthase, large subunit, biosynthetic "; GO:0003984 NbS00056647g0007.1 protein AED:0.33 eAED:0.33 QI:262|1|1|1|1|1|2|256|215; (*GB) gi|255570960|ref|XP_002526431.1| (e_value=2e-141) protein with unknown function [Ricinus communis];; (*SWP) sp|O04486|RAA2A_ARATH (e_value=3e-137) Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1;; (*TAIR) AT1G09630.1 (e_value=2e-138) | Symbols: ATRAB11C, ATRABA2A, ATRAB-A2A, RAB-A2A, RAB11c | RAB GTPase 11C | chr1:3118350-3119571 REVERSE LENGTH=217;; (*ITAG) Solyc01g103380.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:83755957-83758949 transcript_region:SL2.40ch01:83755957..83758949- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00002999g0006.1 protein AED:0.29 eAED:0.29 QI:108|1|1|1|0.5|0.66|3|276|96; (*GB) gi|350534694|ref|NP_001234666.1| (e_value=3e-46) protein RSI-1 precursor [Solanum lycopersicum];; (*SWP) sp|P47926|RSI1_SOLLC (e_value=9e-48) Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1;; (*TAIR) AT1G74670.1 (e_value=1e-26) | Symbols: | Gibberellin-regulated family protein | chr1:28053378-28053893 FORWARD LENGTH=101;; (*ITAG) Solyc11g011210.1.1 (e_value=6e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4263748-4264776 transcript_region:SL2.40ch11:4263748..4264776- go_terms:GO:0005515 functional_description:"Gibberellin regulated protein (AHRD V1 **-- A2Q374_MEDTR); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; GO:0005515 NbS00002999g0001.1 protein AED:0.29 eAED:0.30 QI:234|1|0.83|1|0.6|0.5|6|0|341; (*GB) gi|225462157|ref|XP_002266274.1| (e_value=2e-168) PREDICTED: post-GPI attachment to proteins factor 3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9P6N9|PER1_SCHPO (e_value=8e-52) Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=2 SV=1;; (*TAIR) AT1G16560.3 (e_value=3e-144) | Symbols: | Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342;; (*ITAG) Solyc03g026290.2.1 (e_value=2e-151) genomic_reference:SL2.40ch03 gene_region:8100065-8108535 transcript_region:SL2.40ch03:8100065..8108535- go_terms:GO:0005515,GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_XENTR); contains Interpro domain(s) IPR007217 Per1-like "; GO:0005515,GO:0016788 NbS00040198g0010.1 protein AED:0.12 eAED:0.16 QI:167|0|0.5|1|0|0.5|2|0|647; (*GB) gi|225427963|ref|XP_002277549.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Vitis vinifera];; (*SWP) sp|Q9SKQ4|PP167_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1;; (*TAIR) AT2G21090.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:9045695-9047488 REVERSE LENGTH=597;; (*ITAG) Solyc01g098480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80745537-80747732 transcript_region:SL2.40ch01:80745537..80747732- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LKZ8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00040198g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.62|0.55|1|1|1|9|530|485; (*GB) gi|225427967|ref|XP_002277572.1| (e_value=0.0) PREDICTED: methyltransferase-like protein 16-like [Vitis vinifera];; (*SWP) sp|Q6DC64|MET16_DANRE (e_value=7e-60) Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2 SV=1;; (*TAIR) AT2G21070.1 (e_value=6e-171) | Symbols: FIO1 | methyltransferases | chr2:9040940-9043136 FORWARD LENGTH=483;; (*ITAG) Solyc01g098460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80738870-80744394 transcript_region:SL2.40ch01:80738870..80744394+ go_terms:GO:0008168 functional_description:"Ribosomal RNA large subunit methyltransferase F (AHRD V1 ***- D0KHS1_PECWW); contains Interpro domain(s) IPR017182 S-adenosyl-L-methionine dependent methyltransferase, Mett10D, predicted "; GO:0008168 NbS00040595g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|172; (*ITAG) Solyc05g051810.1.1 (e_value=5e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:61339656-61339874 transcript_region:SL2.40ch05:61339656..61339874+ functional_description:"Unknown Protein (AHRD V1)"; NbC23156557g0001.1 protein AED:0.02 eAED:0.02 QI:10|1|0.5|1|0|0|2|0|35 NbS00033363g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.25|1|0.33|0.25|4|142|683; (*GB) gi|359473574|ref|XP_002265151.2| (e_value=0.0) PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Vitis vinifera];; (*SWP) sp|Q9C9N5|Y1668_ARATH (e_value=2e-122) Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1;; (*TAIR) AT1G67510.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:25297477-25300184 REVERSE LENGTH=719;; (*ITAG) Solyc05g015150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9920907-9925045 transcript_region:SL2.40ch05:9920907..9925045+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000701g0005.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0.33|3|0|278; (*GB) gi|113205247|gb|AAT39965.2| (e_value=6e-33) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00000701g0006.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|0|0.5|2|0|119 NbS00003579g0004.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.75|0.66|0.5|4|0|221; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-65) hypothetical protein [Nicotiana tabacum]; NbS00003472g0007.1 protein AED:0.06 eAED:0.07 QI:27|0|0|1|0.66|0.5|4|0|512; (*GB) gi|224143233|ref|XP_002324888.1| (e_value=2e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=3e-150) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25260.1 (e_value=2e-145) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8752751-8754282 FORWARD LENGTH=463;; (*ITAG) Solyc03g005420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:296785-298965 transcript_region:SL2.40ch03:296785..298965+ functional_description:"Flotillin domain protein (AHRD V1 ***- Q4X200_ASPFU); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00008488g0037.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|286; (*GB) gi|225459925|ref|XP_002264688.1| (e_value=7e-79) PREDICTED: protein BEARSKIN1 [Vitis vinifera];; (*SWP) sp|Q9SV87|BRN2_ARATH (e_value=5e-74) Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1;; (*TAIR) AT4G10350.1 (e_value=4e-75) | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing protein 70 | chr4:6415287-6416829 REVERSE LENGTH=341;; (*ITAG) Solyc06g063430.1.1 (e_value=1e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36497407-36500202 transcript_region:SL2.40ch06:36497407..36500202- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1Q0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00008488g0042.1 protein AED:0.21 eAED:0.21 QI:155|0.8|0.75|1|0.53|0.37|16|161|541; (*GB) gi|255544472|ref|XP_002513297.1| (e_value=0.0) strubbelig receptor, putative [Ricinus communis];; (*SWP) sp|Q6R2K1|SRF5_ARATH (e_value=5e-142) Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1;; (*TAIR) AT1G78980.1 (e_value=4e-143) | Symbols: SRF5 | STRUBBELIG-receptor family 5 | chr1:29707923-29711266 REVERSE LENGTH=699;; (*ITAG) Solyc06g063360.2.1 (e_value=4e-126) genomic_reference:SL2.40ch06 gene_region:36426594-36436029 transcript_region:SL2.40ch06:36426594..36436029- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00008488g0031.1 protein AED:0.34 eAED:0.21 QI:689|0.75|0.4|1|0.75|0.8|5|0|143; (*GB) gi|261351266|gb|ACX71300.1| (e_value=1e-88) chloroplast pigment-binding protein CP26 [Capsicum annuum];; (*SWP) sp|Q9XF89|CB5_ARATH (e_value=2e-81) Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1;; (*TAIR) AT4G10340.1 (e_value=1e-82) | Symbols: LHCB5 | light harvesting complex of photosystem II 5 | chr4:6408200-6409496 FORWARD LENGTH=280;; (*ITAG) Solyc06g063370.2.1 (e_value=1e-88) genomic_reference:SL2.40ch06 gene_region:36437291-36439451 transcript_region:SL2.40ch06:36437291..36439451- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 1A, chloroplastic (AHRD V1 ***- CB2A_PYRPY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00008488g0039.1 protein AED:0.22 eAED:0.23 QI:0|0.8|0.75|1|0.73|0.87|16|233|774; (*GB) gi|255557853|ref|XP_002519956.1| (e_value=0.0) ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis];; (*SWP) sp|Q5LUP9|CLPX_SILPO (e_value=1e-115) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) GN=clpX PE=3 SV=1;; (*TAIR) AT5G53350.1 (e_value=0.0) | Symbols: CLPX | CLP protease regulatory subunit X | chr5:21644060-21647503 FORWARD LENGTH=579;; (*ITAG) Solyc06g063410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36465199-36475111 transcript_region:SL2.40ch06:36465199..36475111- go_terms:GO:0005524,GO:0017111,GO:0006457 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 ***- B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0005524,GO:0017111,GO:0006457 NbS00008488g0028.1 protein AED:0.14 eAED:0.24 QI:0|1|0|1|1|1|2|0|155; (*ITAG) Solyc06g063420.2.1 (e_value=5e-37) genomic_reference:SL2.40ch06 gene_region:36475902-36493708 transcript_region:SL2.40ch06:36475902..36493708- go_terms:GO:0005488 functional_description:"Tfc4p like TFIIIC subunit TPR repeat containing basal transcription factor (AHRD V1 *--- Q5CRV9_CRYPV); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00008488g0043.1 protein AED:0.25 eAED:0.34 QI:30|0.64|0.46|1|0.64|0.6|15|0|458; (*GB) gi|350537129|ref|NP_001234281.1| (e_value=0.0) vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum];; (*SWP) sp|P09469|VATA_DAUCA (e_value=0.0) V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G78900.2 (e_value=0.0) | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623;; (*ITAG) Solyc12g055800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47132031-47139706 transcript_region:SL2.40ch12:47132031..47139706- go_terms:GO:0046961 functional_description:"V-type ATP synthase alpha chain (AHRD V1 ***- VATA_METTH); contains Interpro domain(s) IPR005725 ATPase, V1 complex, subunit A "; GO:0046961 NbS00008488g0036.1 protein AED:0.00 eAED:0.00 QI:759|1|1|1|0.5|0.4|5|201|426; (*GB) gi|225443383|ref|XP_002266749.1| (e_value=6e-149) PREDICTED: uncharacterized protein LOC100249551 [Vitis vinifera];; (*TAIR) AT3G20260.1 (e_value=1e-123) | Symbols: | Protein of unknown function (DUF1666) | chr3:7064190-7065751 REVERSE LENGTH=437;; (*ITAG) Solyc06g063340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36419095-36423610 transcript_region:SL2.40ch06:36419095..36423610+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 ***- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00008488g0007.1 protein AED:0.35 eAED:0.35 QI:230|0.5|0.66|1|1|1|3|204|229; (*GB) gi|388521445|gb|AFK48784.1| (e_value=4e-57) unknown [Lotus japonicus];; (*SWP) sp|Q8GWH5|RTNLT_ARATH (e_value=2e-52) Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1;; (*TAIR) AT1G78895.1 (e_value=1e-53) | Symbols: | Reticulon family protein | chr1:29658313-29659866 REVERSE LENGTH=164;; (*ITAG) Solyc08g077470.2.1 (e_value=9e-71) genomic_reference:SL2.40ch08 gene_region:58561402-58563011 transcript_region:SL2.40ch08:58561402..58563011- go_terms:GO:0005783 functional_description:"Reticulon-like protein B22 (AHRD V1 ***- RTNLT_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00015616g0011.1 protein AED:0.05 eAED:0.05 QI:382|1|1|1|1|1|8|294|527; (*GB) gi|255580789|ref|XP_002531215.1| (e_value=0.0) GATA transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8W4H1|GAT26_ARATH (e_value=8e-138) GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1;; (*TAIR) AT4G17570.3 (e_value=8e-144) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514;; (*ITAG) Solyc08g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1747750-1754041 transcript_region:SL2.40ch08:1747750..1754041- go_terms:GO:0006355 functional_description:"GATA transcription factor 29 (AHRD V1 *-*- B4FZE9_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00015616g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|359495735|ref|XP_003635074.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100855146 [Vitis vinifera];; (*TAIR) AT4G17600.1 (e_value=2e-15) | Symbols: LIL3:1 | Chlorophyll A-B binding family protein | chr4:9803759-9804714 FORWARD LENGTH=262;; (*ITAG) Solyc08g007180.2.1 (e_value=3e-51) genomic_reference:SL2.40ch08 gene_region:1742086-1745512 transcript_region:SL2.40ch08:1742086..1745512- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- A9P991_POPTR)"; NbS00015616g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.83|0.83|1|1|6|0|191; (*GB) gi|356541222|ref|XP_003539079.1| (e_value=5e-67) PREDICTED: vesicle-associated protein 2-1-like [Glycine max];; (*SWP) sp|Q9LVU1|VAP21_ARATH (e_value=1e-64) Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1;; (*TAIR) AT5G47180.2 (e_value=8e-66) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161384-19163265 REVERSE LENGTH=220;; (*ITAG) Solyc08g007200.2.1 (e_value=8e-90) genomic_reference:SL2.40ch08 gene_region:1768260-1774340 transcript_region:SL2.40ch08:1768260..1774340- go_terms:GO:0046982 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MPW2_ARALY); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0046982 NbS00015616g0010.1 protein AED:0.29 eAED:0.34 QI:0|0.8|0.83|1|1|1|6|0|250; (*GB) gi|14719276|gb|AAK73102.1|AF390556_1 (e_value=2e-139) Bax inhibitor 1 [Nicotiana tabacum];; (*SWP) sp|Q9LD45|BI1_ARATH (e_value=1e-102) Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1;; (*TAIR) AT5G47120.1 (e_value=1e-103) | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 1 | chr5:19136071-19137585 FORWARD LENGTH=247;; (*ITAG) Solyc08g077980.2.1 (e_value=2e-124) genomic_reference:SL2.40ch08 gene_region:59033727-59036658 transcript_region:SL2.40ch08:59033727..59036658- go_terms:GO:0005515 functional_description:"Bax inhibitor (AHRD V1 ***- Q6U1L7_SOLLC); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005515 NbS00030290g0015.1 protein AED:0.02 eAED:0.02 QI:125|1|1|1|1|1|2|1006|144; (*GB) gi|350627694|gb|AEQ33640.1| (e_value=3e-59) histone H2A [Lycium barbarum];; (*SWP) sp|O65759|H2AX_CICAR (e_value=4e-57) Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1;; (*TAIR) AT1G54690.1 (e_value=3e-57) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142;; (*ITAG) Solyc09g082710.2.1 (e_value=9e-63) genomic_reference:SL2.40ch09 gene_region:63814378-63815336 transcript_region:SL2.40ch09:63814378..63815336- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- B9MZP0_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00030290g0003.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|91; (*ITAG) Solyc05g010200.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4383517-4383864 transcript_region:SL2.40ch05:4383517..4383864- functional_description:"Unknown Protein (AHRD V1)"; NbS00030290g0016.1 protein AED:0.18 eAED:0.10 QI:0|0.77|0.7|1|0.55|0.5|10|728|329; (*GB) gi|294440430|gb|ADE74632.1| (e_value=5e-97) aspartic protease 1 [Nicotiana tabacum];; (*SWP) sp|P40782|CYPR1_CYNCA (e_value=1e-82) Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2;; (*TAIR) AT4G04460.2 (e_value=1e-86) | Symbols: | Saposin-like aspartyl protease family protein | chr4:2225232-2227746 FORWARD LENGTH=504;; (*ITAG) Solyc03g005280.2.1 (e_value=6e-146) genomic_reference:SL2.40ch03 gene_region:161169-164845 transcript_region:SL2.40ch03:161169..164845- go_terms:GO:0004190 functional_description:"Aspartic proteinase 2 (AHRD V1 **-* Q948P0_SOYBN); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00030290g0014.1 protein AED:0.15 eAED:0.15 QI:116|1|1|1|1|1|3|178|198; (*GB) gi|46401440|gb|AAS92268.1| (e_value=6e-76) early light inducible protein [Solanum lycopersicum];; (*SWP) sp|P11432|ELI_PEA (e_value=3e-60) Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G22840.1 (e_value=6e-60) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195;; (*ITAG) Solyc09g082690.2.1 (e_value=1e-78) genomic_reference:SL2.40ch09 gene_region:63807170-63809227 transcript_region:SL2.40ch09:63807170..63809227- go_terms:GO:0016168 functional_description:"Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)"; GO:0016168 NbS00016021g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0.66|0.25|4|0|337; (*GB) gi|187942401|gb|ACD40009.1| (e_value=0.0) SBP1 [Nicotiana alata];; (*TAIR) AT1G45976.1 (e_value=2e-112) | Symbols: SBP1 | S-ribonuclease binding protein 1 | chr1:17199371-17200680 FORWARD LENGTH=325;; (*ITAG) Solyc04g078760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61012052-61014556 transcript_region:SL2.40ch04:61012052..61014556+ go_terms:GO:0008270 functional_description:"Protein binding protein (AHRD V1 ***- D7KWR9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00045495g0001.1 protein AED:0.20 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|1008; (*GB) gi|359494251|ref|XP_002265136.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246258 [Vitis vinifera];; (*TAIR) AT5G56220.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:22754871-22757792 FORWARD LENGTH=973;; (*ITAG) Solyc07g066180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64884958-64887425 transcript_region:SL2.40ch07:64884958..64887425+ go_terms:GO:0017111 functional_description:"ATP/GTP-binding protein (AHRD V1 *--- A8L7D9_FRASN); contains Interpro domain(s) IPR003593 ATPase, AAA+ type, core "; GO:0017111 NbS00045495g0006.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0|0|2|0|274; (*GB) gi|225463526|ref|XP_002265177.1| (e_value=3e-46) PREDICTED: PRA1 family protein G2 [Vitis vinifera];; (*SWP) sp|Q9FH16|PR1G2_ARATH (e_value=2e-44) PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1;; (*TAIR) AT5G56230.1 (e_value=1e-45) | Symbols: PRA1.G2 | prenylated RAB acceptor 1.G2 | chr5:22758768-22759328 REVERSE LENGTH=186;; (*ITAG) Solyc07g066190.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64888622-64889203 transcript_region:SL2.40ch07:64888622..64889203- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00033405g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.75|4|0|540; (*GB) gi|255586806|ref|XP_002534017.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G23230.1 (e_value=6e-165) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:8244481-8251741 FORWARD LENGTH=1615;; (*ITAG) Solyc05g016460.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:16830687-16841728 transcript_region:SL2.40ch05:16830687..16841728- functional_description:"Unknown Protein (AHRD V1)"; NbS00033405g0013.1 protein AED:0.35 eAED:0.35 QI:0|0.88|0.7|1|0.44|0.5|10|0|553; (*GB) gi|224099539|ref|XP_002311524.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G23230.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:8244481-8251741 FORWARD LENGTH=1615;; (*ITAG) Solyc05g016440.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:16792312-16820119 transcript_region:SL2.40ch05:16792312..16820119- functional_description:"Unknown Protein (AHRD V1)"; NbS00033405g0012.1 protein AED:0.47 eAED:0.50 QI:0|0.25|0.2|1|0.25|0.4|5|423|203; (*GB) gi|255586806|ref|XP_002534017.1| (e_value=9e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G23230.2 (e_value=8e-78) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). | chr1:8244481-8251741 FORWARD LENGTH=1592;; (*ITAG) Solyc05g016440.2.1 (e_value=8e-81) genomic_reference:SL2.40ch05 gene_region:16792312-16820119 transcript_region:SL2.40ch05:16792312..16820119- functional_description:"Unknown Protein (AHRD V1)"; NbS00041605g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.2|1|1|5|0|144; (*GB) gi|224102245|ref|XP_002312607.1| (e_value=7e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=7e-53) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=6e-54) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=2e-55) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00001404g0027.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.5|1|1|1|6|316|280; (*GB) gi|255584608|ref|XP_002533028.1| (e_value=8e-160) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W3M6|UBCP_ARATH (e_value=3e-152) Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana GN=At4g06599 PE=2 SV=1;; (*TAIR) AT4G06599.1 (e_value=2e-153) | Symbols: | ubiquitin family protein | chr4:3666079-3667495 REVERSE LENGTH=340;; (*ITAG) Solyc01g103850.2.1 (e_value=3e-152) genomic_reference:SL2.40ch01 gene_region:84125747-84132192 transcript_region:SL2.40ch01:84125747..84132192+ go_terms:GO:0005634 functional_description:"Ubiquitin-like domain containing CTD phosphatase 1 (AHRD V1 ***- B6TA38_MAIZE); contains Interpro domain(s) IPR011943 HAD-superfamily hydrolase, subfamily IIID "; GO:0005634 NbS00001404g0029.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.62|1|0.57|0.62|8|0|316; (*GB) gi|19568098|gb|AAL89456.1| (e_value=0.0) osmotic stress-activated protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9C958|SRK2B_ARATH (e_value=1e-174) Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1;; (*TAIR) AT1G60940.2 (e_value=7e-176) | Symbols: SNRK2-10, SNRK2.10, SRK2B | SNF1-related protein kinase 2.10 | chr1:22439398-22441896 REVERSE LENGTH=361;; (*ITAG) Solyc01g103940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84178144-84182461 transcript_region:SL2.40ch01:84178144..84182461+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00001404g0006.1 protein AED:0.38 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|160; (*GB) gi|62733645|gb|AAX95761.1| (e_value=1e-23) SRF-type transcription factor family protein [Solanum lycopersicum];; (*ITAG) Solyc01g103870.1.1 (e_value=6e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:84136156-84136533 transcript_region:SL2.40ch01:84136156..84136533+ go_terms:GO:0005634 functional_description:"SRF-type transcription factor family protein (AHRD V1 ***- Q53J20_SOLLC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00001404g0030.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|209; (*GB) gi|242085196|ref|XP_002443023.1| (e_value=5e-27) hypothetical protein SORBIDRAFT_08g006490 [Sorghum bicolor];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=8e-24) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT1G14440.2 (e_value=3e-24) | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31 | chr1:4939076-4940014 REVERSE LENGTH=312;; (*ITAG) Solyc01g103830.1.1 (e_value=5e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:84113442-84114496 transcript_region:SL2.40ch01:84113442..84114496- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 **-- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00001404g0031.1 protein AED:0.11 eAED:0.14 QI:0|0.53|0.5|0.85|0.76|0.78|14|0|909; (*GB) gi|359486287|ref|XP_002266693.2| (e_value=0.0) PREDICTED: phospholipase D delta-like [Vitis vinifera];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc10g024370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13627567-13633260 transcript_region:SL2.40ch10:13627567..13633260+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00001404g0026.1 protein AED:0.27 eAED:0.32 QI:0|0.72|0.41|1|1|1|12|0|638; (*GB) gi|255579669|ref|XP_002530674.1| (e_value=0.0) endomembrane protein emp70, putative [Ricinus communis];; (*SWP) sp|Q9ET30|TM9S3_MOUSE (e_value=3e-151) Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1;; (*TAIR) AT1G10950.1 (e_value=0.0) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc01g103930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84168402-84175175 transcript_region:SL2.40ch01:84168402..84175175- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00001404g0028.1 protein AED:0.23 eAED:0.34 QI:0|0|0|1|0|0|4|0|253; (*GB) gi|225448174|ref|XP_002264330.1| (e_value=3e-89) PREDICTED: COBRA-like protein 1-like [Vitis vinifera];; (*SWP) sp|O04500|COBL6_ARATH (e_value=6e-74) COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2;; (*TAIR) AT1G09790.1 (e_value=4e-75) | Symbols: COBL6 | COBRA-like protein 6 precursor | chr1:3168568-3170819 REVERSE LENGTH=454;; (*ITAG) Solyc01g103860.2.1 (e_value=3e-114) genomic_reference:SL2.40ch01 gene_region:84133359-84135862 transcript_region:SL2.40ch01:84133359..84135862+ functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00003133g0001.1 protein AED:0.22 eAED:0.22 QI:269|0.75|0.66|1|1|1|9|419|312; (*GB) gi|225469734|ref|XP_002270656.1| (e_value=3e-64) PREDICTED: uncharacterized protein LOC100257638 [Vitis vinifera];; (*TAIR) AT4G30993.2 (e_value=1e-36) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:15098201-15099935 FORWARD LENGTH=285;; (*ITAG) Solyc12g010230.1.1 (e_value=9e-143) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3342181-3346441 transcript_region:SL2.40ch12:3342181..3346441+ functional_description:"Os06g0183700 protein (Fragment) (AHRD V1 *-*- Q0DE22_ORYSJ)"; NbS00003133g0024.1 protein AED:0.45 eAED:0.56 QI:0|0|0.5|1|0|0|2|326|63 NbS00003133g0025.1 protein AED:0.45 eAED:0.61 QI:0|0.25|0|1|0.25|0.6|5|0|155 NbS00044149g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.77|1|0.87|0.88|9|187|601; (*GB) gi|16903353|gb|AAL30454.1|AF362949_1 (e_value=0.0) endo-beta-1,4-glucanase precursor [Nicotiana tabacum];; (*SWP) sp|Q42059|GUN6_ARATH (e_value=0.0) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2;; (*TAIR) AT1G64390.1 (e_value=0.0) | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 | chr1:23911329-23914642 FORWARD LENGTH=620;; (*ITAG) Solyc08g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0030246,GO:0005576,GO:0005975,GO:0003824 NbS00002838g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|424; (*GB) gi|113205277|gb|AAT38703.2| (e_value=6e-13) hypothetical protein SDM1_34t00012 [Solanum demissum];; (*ITAG) Solyc05g007520.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2083855-2084758 transcript_region:SL2.40ch05:2083855..2084758+ functional_description:"FAM65A protein related (AHRD V1 ***- Q6L3W5_SOLDE)"; NbS00002838g0006.1 protein AED:0.26 eAED:0.29 QI:241|0.6|0.66|1|0.4|0.83|6|0|188; (*GB) gi|350538713|ref|NP_001234100.1| (e_value=2e-60) tobamovirus multiplication 1 homolog 2 [Solanum lycopersicum];; (*TAIR) AT4G21790.1 (e_value=3e-32) | Symbols: TOM1, ATTOM1 | tobamovirus multiplication 1 | chr4:11569924-11572163 FORWARD LENGTH=291;; (*ITAG) Solyc01g105270.2.1 (e_value=4e-63) genomic_reference:SL2.40ch01 gene_region:85255989-85262868 transcript_region:SL2.40ch01:85255989..85262868- go_terms:GO:0005515 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515 NbS00046480g0006.1 protein AED:0.15 eAED:0.16 QI:149|0.5|0.4|1|0.5|0.6|5|0|268; (*GB) gi|255543903|ref|XP_002513014.1| (e_value=7e-82) Ribosome-binding factor A, putative [Ricinus communis];; (*SWP) sp|O65693|RBFA_ARATH (e_value=1e-79) Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2;; (*TAIR) AT4G34730.1 (e_value=8e-81) | Symbols: | ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE LENGTH=215;; (*ITAG) Solyc01g110550.2.1 (e_value=6e-123) genomic_reference:SL2.40ch01 gene_region:88966945-88970984 transcript_region:SL2.40ch01:88966945..88970984- go_terms:GO:0003723 functional_description:"Ribosome-binding factor A (AHRD V1 **** B6TDG2_MAIZE); contains Interpro domain(s) IPR000238 Ribosome-binding factor A "; GO:0003723 NbS00007478g0014.1 protein AED:0.13 eAED:0.11 QI:79|0.71|0.62|1|0.28|0.37|8|939|235; (*GB) gi|224118020|ref|XP_002317713.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73480.1 (e_value=6e-35) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27629266-27632486 FORWARD LENGTH=463;; (*ITAG) Solyc03g098020.2.1 (e_value=8e-66) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00007478g0016.1 protein AED:0.12 eAED:0.12 QI:212|1|1|1|0.73|0.85|20|307|594; (*GB) gi|350538091|ref|NP_001234326.1| (e_value=0.0) putative 3,4-dihydroxy-2-butanone kinase [Solanum lycopersicum];; (*SWP) sp|O04059|DHBK_SOLLC (e_value=0.0) Putative 3,4-dihydroxy-2-butanone kinase OS=Solanum lycopersicum GN=DHBK PE=2 SV=1;; (*TAIR) AT1G48430.1 (e_value=0.0) | Symbols: | Dihydroxyacetone kinase | chr1:17902874-17906689 REVERSE LENGTH=593;; (*ITAG) Solyc06g072380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41035937-41046448 transcript_region:SL2.40ch06:41035937..41046448- go_terms:GO:0004371 functional_description:"Dihydroxyacetone/glycerone kinase-like protein (AHRD V1 **** Q9LSH1_ARATH); contains Interpro domain(s) IPR012734 Dihydroxyacetone kinase "; GO:0004371 NbS00007478g0018.1 protein AED:0.24 eAED:0.34 QI:55|0.5|0.4|1|0|0.2|5|0|242; (*GB) gi|224125744|ref|XP_002329707.1| (e_value=1e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=9e-44) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=2e-80) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc03g098030.2.1 (e_value=1e-120) genomic_reference:SL2.40ch03 gene_region:53828514-53831008 transcript_region:SL2.40ch03:53828514..53831008+ go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00007478g0019.1 protein AED:0.40 eAED:0.41 QI:0|1|0.5|1|1|1|2|0|97; (*GB) gi|224118024|ref|XP_002317714.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84MA2|IP5P1_ARATH (e_value=1e-28) Type I inositol 1,4,5-trisphosphate 5-phosphatase 1 OS=Arabidopsis thaliana GN=IP5P1 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=5e-37) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc06g072390.2.1 (e_value=1e-63) genomic_reference:SL2.40ch06 gene_region:41052839-41053567 transcript_region:SL2.40ch06:41052839..41053567- functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 ***- Q6H453_ORYSJ); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00022484g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|276; (*GB) gi|225424195|ref|XP_002284189.1| (e_value=7e-86) PREDICTED: uncharacterized protein At1g66480 [Vitis vinifera];; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=1e-37) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT2G01340.1 (e_value=3e-51) | Symbols: At17.1 | Encodes a protein whose expression is responsive to nematode infection. | chr2:164014-165068 FORWARD LENGTH=215;; (*ITAG) Solyc05g008220.2.1 (e_value=1e-107) genomic_reference:SL2.40ch05 gene_region:2614801-2616837 transcript_region:SL2.40ch05:2614801..2616837+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020764g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|225452660|ref|XP_002276619.1| (e_value=6e-59) PREDICTED: uncharacterized protein LOC100267969 [Vitis vinifera];; (*TAIR) AT1G59710.1 (e_value=3e-52) | Symbols: | Protein of unknown function (DUF569) | chr1:21938623-21939673 FORWARD LENGTH=300;; (*ITAG) Solyc02g087580.2.1 (e_value=7e-83) genomic_reference:SL2.40ch02 gene_region:44548500-44552413 transcript_region:SL2.40ch02:44548500..44552413+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 *--- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00020764g0014.1 protein AED:0.17 eAED:0.17 QI:215|0.93|0.96|1|0.90|0.87|33|146|1111; (*GB) gi|359488777|ref|XP_002282227.2| (e_value=0.0) PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like [Vitis vinifera];; (*SWP) sp|Q5XHF8|VIP2_XENLA (e_value=0.0) Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 OS=Xenopus laevis GN=ppip5k2 PE=2 SV=1;; (*TAIR) AT5G15070.1 (e_value=0.0) | Symbols: | Phosphoglycerate mutase-like family protein | chr5:4876898-4885615 FORWARD LENGTH=1049;; (*ITAG) Solyc02g087620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44563220-44582860 transcript_region:SL2.40ch02:44563220..44582860+ go_terms:GO:0033187 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (AHRD V1 **-* VIP2_MOUSE); contains Interpro domain(s) IPR000560 Histidine acid phosphatase "; GO:0033187 NbS00020764g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|487; (*GB) gi|296087773|emb|CBI35029.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJJ1|PP259_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1;; (*TAIR) AT3G28640.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:10731518-10733032 REVERSE LENGTH=504;; (*ITAG) Solyc02g087610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44557619-44559157 transcript_region:SL2.40ch02:44557619..44559157+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LM18_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00020764g0013.1 protein AED:0.10 eAED:0.10 QI:127|1|1|1|0.5|0.66|3|370|142; (*GB) gi|66096352|gb|AAY42864.1| (e_value=7e-82) thioredoxin H [Nicotiana alata];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=5e-55) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=4e-56) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc02g087630.2.1 (e_value=7e-66) genomic_reference:SL2.40ch02 gene_region:44583542-44584495 transcript_region:SL2.40ch02:44583542..44584495- go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00021163g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.83|1|1|1|6|0|608; (*GB) gi|225464416|ref|XP_002269556.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|Q9SQZ0|CAAT7_ARATH (e_value=0.0) Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1;; (*TAIR) AT3G10600.1 (e_value=0.0) | Symbols: CAT7 | cationic amino acid transporter 7 | chr3:3313969-3317162 FORWARD LENGTH=584;; (*ITAG) Solyc11g006710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1308228-1311947 transcript_region:SL2.40ch11:1308228..1311947- go_terms:GO:0016020 functional_description:"Cationic amino acid transporter (AHRD V1 ***- B9HVV3_POPTR); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00028282g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.75|1|1|4|0|236; (*GB) gi|125554151|gb|EAY99756.1| (e_value=1e-30) hypothetical protein OsI_21741 [Oryza sativa Indica Group];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=5e-26) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28660.1 (e_value=1e-24) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10071856-10073371 REVERSE LENGTH=383;; (*ITAG) Solyc12g096620.1.1 (e_value=3e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63796435-63797577 transcript_region:SL2.40ch12:63796435..63797577- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00028282g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|563; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=3e-165) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=7e-123) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=5e-124) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00028335g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|224; (*GB) gi|224128296|ref|XP_002329129.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28280.1 (e_value=4e-52) | Symbols: | VQ motif-containing protein | chr1:9886652-9887395 REVERSE LENGTH=247;; (*ITAG) Solyc07g063070.1.1 (e_value=9e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62873214-62873915 transcript_region:SL2.40ch07:62873214..62873915- functional_description:"DNA-binding WRKY VQ (AHRD V1 ***- Q2HTS9_MEDTR); contains Interpro domain(s) IPR008889 VQ "; NbS00028335g0009.1 protein AED:0.33 eAED:0.39 QI:0|0.54|0.58|1|1|1|12|461|521; (*GB) gi|378405187|sp|E0CSI1.2|MTBC1_VITVI (e_value=3e-161) RecName: Full=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1; Includes: RecName: Full=Methylthioribulose-1-phosphate dehydratase; Short=MTRu-1-P dehydratase; Includes: RecName: Full=Enolase-phosphatase E1; AltName: Full=2,3-diketo-5-methylthio-1-phosphopentane phosphatase;; (*SWP) sp|E0CSI1|MTBC1_VITVI (e_value=8e-163) Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 OS=Vitis vinifera GN=VIT_19s0014g02480 PE=2 SV=2;; (*TAIR) AT5G53850.2 (e_value=6e-174) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr5:21861155-21864817 REVERSE LENGTH=507;; (*ITAG) Solyc07g063040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62856775-62862494 transcript_region:SL2.40ch07:62856775..62862494+ go_terms:GO:0046872,GO:0008152,GO:0005737,GO:0019509 functional_description:"Enolase-phosphatase E-1 (AHRD V1 *-*- A8UQN2_9AQUI); contains Interpro domain(s) IPR017714 Methylthioribulose-1-phosphate dehydratase "; GO:0046872,GO:0008152,GO:0005737,GO:0019509 NbS00002302g0009.1 protein AED:0.05 eAED:0.07 QI:94|1|0.85|1|0.66|0.71|7|0|344; (*GB) gi|225443290|ref|XP_002273701.1| (e_value=4e-133) PREDICTED: uncharacterized protein LOC100243398 [Vitis vinifera];; (*TAIR) AT1G73090.1 (e_value=5e-122) | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27488264-27490593 FORWARD LENGTH=306;; (*ITAG) Solyc06g063230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36324899-36329501 transcript_region:SL2.40ch06:36324899..36329501+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002302g0010.1 protein AED:0.04 eAED:0.08 QI:283|0.4|0.16|1|0.6|0.5|6|0|1009; (*GB) gi|30013669|gb|AAP03877.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum];; (*SWP) sp|Q9C5V5|GLR28_ARATH (e_value=0.0) Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2;; (*TAIR) AT2G29110.1 (e_value=0.0) | Symbols: ATGLR2.8, GLR2.8 | glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947;; (*ITAG) Solyc06g063200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00002302g0012.1 protein AED:0.56 eAED:0.56 QI:6|0.33|0.25|0.5|0.33|0.5|4|0|120 NbS00008496g0005.1 protein AED:0.40 eAED:0.41 QI:0|0.57|0.5|0.87|0.71|0.75|8|0|387; (*GB) gi|225449462|ref|XP_002283252.1| (e_value=1e-96) PREDICTED: actin-related protein 5 [Vitis vinifera];; (*SWP) sp|Q940Z2|ARP5_ARATH (e_value=2e-88) Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2;; (*TAIR) AT3G12380.2 (e_value=7e-90) | Symbols: ARP5 | actin-related protein 5 | chr3:3938309-3941785 REVERSE LENGTH=730;; (*ITAG) Solyc06g043170.2.1 (e_value=3e-113) genomic_reference:SL2.40ch06 gene_region:26145427-26158030 transcript_region:SL2.40ch06:26145427..26158030- go_terms:GO:0043140 functional_description:"Actin family protein (AHRD V1 ***- C5P4B4_COCP7); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0043140 NbS00008623g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.5|0.87|1|1|8|0|283; (*GB) gi|255546123|ref|XP_002514121.1| (e_value=7e-135) valacyclovir hydrolase, putative [Ricinus communis];; (*TAIR) AT3G47560.1 (e_value=4e-128) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17525575-17526977 REVERSE LENGTH=265;; (*ITAG) Solyc07g039510.2.1 (e_value=5e-170) genomic_reference:SL2.40ch07 gene_region:44941343-44948351 transcript_region:SL2.40ch07:44941343..44948351- go_terms:GO:0003824 functional_description:"Esterase/lipase/thioesterase (Fragment) (AHRD V1 **-- B3VW47_POPTN); contains Interpro domain(s) IPR013744 Protein of unknown function DUF1749 "; GO:0003824 NbS00008623g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.88|0.8|1|0.77|0.7|10|378|772; (*GB) gi|297738658|emb|CBI27903.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YYA3|CRS1_ORYSJ (e_value=6e-116) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1;; (*TAIR) AT4G29750.1 (e_value=0.0) | Symbols: | CRS1 / YhbY (CRM) domain-containing protein | chr4:14569728-14572962 FORWARD LENGTH=841;; (*ITAG) Solyc07g039500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:44930650-44935280 transcript_region:SL2.40ch07:44930650..44935280+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK64_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00008913g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.81|0.82|1|0.62|0.70|17|0|765; (*GB) gi|359481163|ref|XP_002263306.2| (e_value=0.0) PREDICTED: AMP deaminase [Vitis vinifera];; (*SWP) sp|O80452|AMPD_ARATH (e_value=0.0) AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2;; (*TAIR) AT2G38280.2 (e_value=0.0) | Symbols: FAC1, ATAMPD | AMP deaminase, putative / myoadenylate deaminase, putative | chr2:16033767-16038793 REVERSE LENGTH=839;; (*ITAG) Solyc09g014770.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6868580-6881280 transcript_region:SL2.40ch09:6868580..6881280+ go_terms:GO:0009168 functional_description:"AMP deaminase (AHRD V1 ***- D3BRS6_POLPA); contains Interpro domain(s) IPR006329 AMP deaminase "; GO:0009168 NbS00008913g0009.1 protein AED:0.34 eAED:0.34 QI:114|0.92|0.86|1|0.85|0.93|15|375|378; (*GB) gi|228535376|gb|ACQ44245.1| (e_value=0.0) chlorophyll synthase [Nicotiana tabacum];; (*SWP) sp|Q38833|CHLG_ARATH (e_value=0.0) Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1;; (*TAIR) AT3G51820.1 (e_value=0.0) | Symbols: ATG4, G4, CHLG | UbiA prenyltransferase family protein | chr3:19216301-19218934 REVERSE LENGTH=387;; (*ITAG) Solyc09g014760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6841510-6847724 transcript_region:SL2.40ch09:6841510..6847724- go_terms:GO:0046408 functional_description:"Chlorophyll synthase (AHRD V1 **** C3W4Q2_TOBAC); contains Interpro domain(s) IPR011799 Chlorophyll synthase, ChlG "; GO:0046408 NbS00008913g0116.1 protein AED:0.00 eAED:0.00 QI:220|1|1|1|1|1|2|155|369 NbS00008913g0101.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|1|1|3|119|621 NbS00008913g0117.1 protein AED:0.03 eAED:0.03 QI:101|0.83|0.71|1|0.5|0.57|7|284|338 NbS00008913g0118.1 protein AED:0.11 eAED:0.11 QI:252|1|0.83|1|1|1|6|0|428 NbS00038850g0003.1 protein AED:0.57 eAED:0.75 QI:0|0|0|0.66|0.5|0.33|3|0|84; (*ITAG) Solyc09g074900.2.1 (e_value=1e-30) genomic_reference:SL2.40ch09 gene_region:62198122-62204508 transcript_region:SL2.40ch09:62198122..62204508- go_terms:GO:0000033 functional_description:"Dolichyl-P-Man Man5GlcNAc2-PP-dolichyl mannosyltransferase (AHRD V1 **** C0H8S4_SALSA); contains Interpro domain(s) IPR007873 Glycosyltransferase, ALG3 "; GO:0000033 NbS00030940g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.14|1|0.5|0.42|7|0|293; (*GB) gi|297741314|emb|CBI32445.3| (e_value=3e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|P52711|CBP23_HORVU (e_value=4e-49) Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1;; (*TAIR) AT3G07990.1 (e_value=3e-49) | Symbols: SCPL27 | serine carboxypeptidase-like 27 | chr3:2552544-2554644 FORWARD LENGTH=459;; (*ITAG) Solyc01g108490.2.1 (e_value=1e-90) genomic_reference:SL2.40ch01 gene_region:87558195-87563710 transcript_region:SL2.40ch01:87558195..87563710- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00030940g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.5|1|0.66|0.75|4|535|285; (*GB) gi|2708532|gb|AAB92518.1| (e_value=5e-157) putative RNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=2e-158) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*TAIR) AT3G19130.1 (e_value=1e-105) | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435;; (*ITAG) Solyc01g108500.2.1 (e_value=2e-148) genomic_reference:SL2.40ch01 gene_region:87565501-87571455 transcript_region:SL2.40ch01:87565501..87571455- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **-* PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00030940g0002.1 protein AED:0.56 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|85 NbS00008255g0003.1 protein AED:0.09 eAED:0.09 QI:17|1|1|1|1|1|7|189|350; (*GB) gi|225460670|ref|XP_002266148.1| (e_value=2e-121) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-43) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G43650.1 (e_value=9e-100) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:16443861-16446814 REVERSE LENGTH=343;; (*ITAG) Solyc04g071400.2.1 (e_value=1e-149) genomic_reference:SL2.40ch04 gene_region:55969754-55972924 transcript_region:SL2.40ch04:55969754..55972924+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- B6TIX8_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00015024g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|445; (*GB) gi|30013665|gb|AAP03875.1| (e_value=0.0) putative chloroplast thiazole biosynthetic protein [Nicotiana tabacum];; (*SWP) sp|F6H9A9|THI41_VITVI (e_value=0.0) Thiamine thiazole synthase 1, chloroplastic OS=Vitis vinifera GN=THI1-1 PE=3 SV=1;; (*TAIR) AT5G54770.1 (e_value=3e-180) | Symbols: THI1, TZ, THI4 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) | chr5:22246634-22247891 FORWARD LENGTH=349;; (*ITAG) Solyc07g064160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63644226-63646402 transcript_region:SL2.40ch07:63644226..63646402+ go_terms:GO:0008270,GO:0042803 functional_description:"Thiazole biosynthetic enzyme (AHRD V1 ***- D6N3H1_GOSHI); contains Interpro domain(s) IPR002922 Thiamine biosynthesis Thi4 protein "; GO:0008270,GO:0042803 NbS00015024g0008.1 protein AED:0.61 eAED:0.61 QI:0|0.33|0|0.5|1|0.75|4|0|134; (*GB) gi|28193050|emb|CAD58629.1| (e_value=2e-64) SUI1 protein [Coffea arabica];; (*SWP) sp|O48650|SUI1_SALBA (e_value=1e-62) Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1;; (*TAIR) AT4G27130.1 (e_value=1e-60) | Symbols: | Translation initiation factor SUI1 family protein | chr4:13604814-13605525 REVERSE LENGTH=113;; (*ITAG) Solyc07g064150.2.1 (e_value=6e-68) genomic_reference:SL2.40ch07 gene_region:63638382-63639895 transcript_region:SL2.40ch07:63638382..63639895+ go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00013452g0014.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|80; (*GB) gi|57013956|ref|YP_173428.1| (e_value=8e-31) hypothetical protein NitaMp089 [Nicotiana tabacum];; (*ITAG) Solyc07g065770.2.1 (e_value=3e-36) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00013452g0015.1 protein AED:0.22 eAED:0.22 QI:593|1|1|1|0.5|0.66|3|75|43 NbS00005549g0004.1 protein AED:0.37 eAED:0.68 QI:0|0|0|1|0|0|2|0|65 NbS00011292g0006.1 protein AED:0.05 eAED:0.09 QI:0|0.65|0.70|0.91|0.65|0.70|24|2578|588; (*GB) gi|297739690|emb|CBI29872.3| (e_value=8e-125) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57570.1 (e_value=6e-76) | Symbols: | ARM repeat superfamily protein | chr3:21312598-21320105 FORWARD LENGTH=1092; NbS00002244g0006.1 protein AED:0.19 eAED:0.20 QI:0|0.66|0.25|1|0.66|0.75|4|0|445; (*GB) gi|225426578|ref|XP_002279898.1| (e_value=0.0) PREDICTED: putative aminoacrylate hydrolase RutD [Vitis vinifera];; (*TAIR) AT4G24140.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12530032-12533664 REVERSE LENGTH=498;; (*ITAG) Solyc08g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3003194-3008230 transcript_region:SL2.40ch08:3003194..3008230- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M8X4_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00002244g0008.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|80 NbS00002900g0008.1 protein AED:0.28 eAED:0.30 QI:0|0.25|0.2|1|0.25|0.4|5|295|232; (*GB) gi|81076617|gb|ABB55396.1| (e_value=6e-66) unknown [Solanum tuberosum];; (*TAIR) AT1G20225.1 (e_value=2e-36) | Symbols: | Thioredoxin superfamily protein | chr1:7007966-7009318 REVERSE LENGTH=233;; (*ITAG) Solyc06g062280.2.1 (e_value=3e-67) genomic_reference:SL2.40ch06 gene_region:35675303-35677937 transcript_region:SL2.40ch06:35675303..35677937+ functional_description:"DSBA oxidoreductase (AHRD V1 ***- A4T4K6_MYCGI); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00025772g0014.1 protein AED:0.03 eAED:0.03 QI:261|0.83|0.85|1|0.83|0.71|7|251|920; (*GB) gi|11561806|gb|AAC83688.2| (e_value=0.0) 101 kDa heat shock protein [Nicotiana tabacum];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=0.0) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT1G74310.1 (e_value=0.0) | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911;; (*ITAG) Solyc03g115230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59065016-59069171 transcript_region:SL2.40ch03:59065016..59069171- go_terms:GO:0019538,GO:0005524,GO:0017111 functional_description:"ClpB chaperone (AHRD V1 ***- D6QXI5_TRYCR); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111 NbS00025772g0018.1 protein AED:0.31 eAED:0.31 QI:304|1|0.85|1|0.33|0.57|7|0|287; (*GB) gi|388517393|gb|AFK46758.1| (e_value=8e-107) unknown [Lotus japonicus];; (*TAIR) AT3G05010.1 (e_value=1e-104) | Symbols: | Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300;; (*ITAG) Solyc06g069490.2.1 (e_value=2e-158) genomic_reference:SL2.40ch06 gene_region:39647267-39651761 transcript_region:SL2.40ch06:39647267..39651761- functional_description:"Transmembrane protein adipocyte-associated 1 homolog (AHRD V1 ***- TPRA1_CHICK); contains Interpro domain(s) IPR018781 Protein of unknown function, transmembrane-40 "; NbS00025772g0016.1 protein AED:0.17 eAED:0.18 QI:0|0.57|0.33|0.93|0.64|0.53|15|756|1812; (*GB) gi|147861747|emb|CAN81071.1| (e_value=7e-130) hypothetical protein VITISV_001976 [Vitis vinifera];; (*TAIR) AT5G07980.1 (e_value=3e-50) | Symbols: | dentin sialophosphoprotein-related | chr5:2549432-2554669 REVERSE LENGTH=1501;; (*ITAG) Solyc06g069500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39664520-39673451 transcript_region:SL2.40ch06:39664520..39673451+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00024931g0008.1 protein AED:0.14 eAED:0.17 QI:630|1|0.66|1|0.5|0.66|3|0|524; (*GB) gi|225456548|ref|XP_002265203.1| (e_value=2e-139) PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=2e-42) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=1e-43) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc12g038520.1.1 (e_value=5e-145) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35933880-35935930 transcript_region:SL2.40ch12:35933880..35935930- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00024931g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|1|0.66|1|4|0|353; (*GB) gi|110559491|gb|ABG76000.1| (e_value=0.0) GRP-like protein 2 [Gossypium hirsutum];; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc03g114860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58802749-58804466 transcript_region:SL2.40ch03:58802749..58804466- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00003587g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|224146222|ref|XP_002325927.1| (e_value=4e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05250.1 (e_value=2e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1557116-1557835 REVERSE LENGTH=239;; (*ITAG) Solyc06g049020.1.1 (e_value=7e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:28759229-28759888 transcript_region:SL2.40ch06:28759229..28759888- functional_description:"Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848 (AHRD V1 ***- C7IVU8_9POAL)"; NbS00003587g0002.1 protein AED:0.17 eAED:0.24 QI:0|0|0|1|1|1|3|0|200; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=1e-35) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=2e-16) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=1e-17) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=9e-47) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008358g0004.1 protein AED:0.16 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|496; (*GB) gi|225459507|ref|XP_002284432.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245359 [Vitis vinifera];; (*SWP) sp|O53870|DAPC_MYCTU (e_value=1e-97) Probable N-succinyldiaminopimelate aminotransferase DapC OS=Mycobacterium tuberculosis GN=dapC PE=1 SV=1;; (*TAIR) AT1G77670.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:29189043-29190901 REVERSE LENGTH=440;; (*ITAG) Solyc11g013170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6035007-6043373 transcript_region:SL2.40ch11:6035007..6043373+ go_terms:GO:0009058,GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- Q67UZ0_ORYSJ); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00018418g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.85|1|1|0.71|0.75|8|304|321; (*GB) gi|543867|sp|P26360.2|ATPG3_IPOBA (e_value=2e-146) RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P26360|ATPG3_IPOBA (e_value=6e-148) ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2;; (*TAIR) AT2G33040.1 (e_value=4e-126) | Symbols: ATP3 | gamma subunit of Mt ATP synthase | chr2:14018978-14021047 REVERSE LENGTH=325;; (*ITAG) Solyc03g115110.2.1 (e_value=5e-152) genomic_reference:SL2.40ch03 gene_region:58968179-58972603 transcript_region:SL2.40ch03:58968179..58972603- go_terms:GO:0005515 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B9SZS3_RICCO); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0005515 NbS00027682g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.66|0.75|1|0.33|0.75|4|0|125; (*GB) gi|356524409|ref|XP_003530821.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100797699 [Glycine max];; (*SWP) sp|Q6NPG7|Y5382_ARATH (e_value=3e-30) Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1;; (*TAIR) AT5G43822.1 (e_value=2e-31) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195;; (*ITAG) Solyc08g069130.1.1 (e_value=4e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55412822-55413421 transcript_region:SL2.40ch08:55412822..55413421- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MNK9_ARALY)"; NbS00027682g0001.1 protein AED:0.05 eAED:0.65 QI:0|0|0|1|0|0.5|2|19|89; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027682g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|129; (*ITAG) Solyc04g053070.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00028511g0013.1 protein AED:0.07 eAED:0.07 QI:281|1|0.5|1|1|0.5|2|0|124; (*GB) gi|359488185|ref|XP_002279980.2| (e_value=2e-64) PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera];; (*TAIR) AT1G67140.3 (e_value=2e-62) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2223;; (*ITAG) Solyc02g085810.2.1 (e_value=2e-69) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00028511g0003.1 protein AED:0.32 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|296087294|emb|CBI33668.3| (e_value=3e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=7e-37) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=5e-38) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc02g085800.1.1 (e_value=3e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43154776-43155807 transcript_region:SL2.40ch02:43154776..43155807+ go_terms:GO:0016298,GO:0017171 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIF8); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0016298,GO:0017171 NbS00028511g0012.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.25|0.57|0.87|8|0|253; (*GB) gi|296087293|emb|CBI33667.3| (e_value=3e-109) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67140.3 (e_value=1e-93) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2223;; (*ITAG) Solyc02g085810.2.1 (e_value=1e-139) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00009384g0005.1 protein AED:0.20 eAED:0.20 QI:421|1|1|1|1|1|10|340|350; (*GB) gi|225437515|ref|XP_002275221.1| (e_value=0.0) PREDICTED: dnaJ homolog subfamily B member 11 [Vitis vinifera];; (*SWP) sp|Q6TUG0|DJB11_RAT (e_value=9e-97) DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1;; (*TAIR) AT3G62600.1 (e_value=0.0) | Symbols: ATERDJ3B, ERDJ3B | DNAJ heat shock family protein | chr3:23151038-23153346 REVERSE LENGTH=346;; (*ITAG) Solyc01g079610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71223893-71229871 transcript_region:SL2.40ch01:71223893..71229871- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00057684g0001.1 protein AED:0.06 eAED:0.13 QI:0|0.8|0.5|1|1|1|6|0|497; (*GB) gi|13183177|gb|AAK15089.1|AF240006_1 (e_value=0.0) 7S globulin [Sesamum indicum];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=9e-123) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT3G22640.1 (e_value=3e-70) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486;; (*ITAG) Solyc09g065470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59169265-59174553 transcript_region:SL2.40ch09:59169265..59174553+ go_terms:GO:0045735,GO:0008152 functional_description:"Vicilin (Fragment) (AHRD V1 **-- B4X640_PISVE); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0008152 NbS00011922g0010.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|386; (*GB) gi|356507473|ref|XP_003522490.1| (e_value=1e-158) PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max];; (*SWP) sp|Q9FVQ0|YUC10_ARATH (e_value=2e-143) Flavin-containing monooxygenase YUCCA10 OS=Arabidopsis thaliana GN=YUC10 PE=2 SV=1;; (*TAIR) AT1G48910.1 (e_value=1e-144) | Symbols: YUC10 | Flavin-containing monooxygenase family protein | chr1:18091681-18093774 FORWARD LENGTH=383;; (*ITAG) Solyc09g091720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66298946-66301130 transcript_region:SL2.40ch09:66298946..66301130+ go_terms:GO:0055114 functional_description:"Monooxygenase (AHRD V1 ***- B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0055114 NbS00011922g0011.1 protein AED:0.22 eAED:0.25 QI:539|0.7|0.76|0.95|0.6|0.57|21|0|951; (*GB) gi|225433442|ref|XP_002285674.1| (e_value=0.0) PREDICTED: non-lysosomal glucosylceramidase-like [Vitis vinifera];; (*SWP) sp|Q5M868|GBA2_RAT (e_value=2e-157) Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2;; (*TAIR) AT3G24180.2 (e_value=0.0) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr3:8735011-8741147 REVERSE LENGTH=950;; (*ITAG) Solyc09g091850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66402329-66414666 transcript_region:SL2.40ch09:66402329..66414666- go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9RWK0_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00005174g0002.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|1|1|3|0|79; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=5e-28) hypothetical protein [Nicotiana tabacum]; NbS00010729g0013.1 protein AED:0.31 eAED:0.31 QI:146|0.91|0.88|1|0.70|0.84|25|251|862; (*GB) gi|255538520|ref|XP_002510325.1| (e_value=0.0) exocyst complex component sec3, putative [Ricinus communis];; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=0.0) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.1 (e_value=0.0) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=887;; (*ITAG) Solyc12g088990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62594071-62609745 transcript_region:SL2.40ch12:62594071..62609745- functional_description:"Exocyst complex component 1 (AHRD V1 ***- Q5PPR2_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00049958g0002.1 protein AED:0.15 eAED:0.15 QI:0|0.25|0|1|0|0|5|0|213; (*GB) gi|225441006|ref|XP_002283672.1| (e_value=8e-120) PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Vitis vinifera];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=2e-108) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=1e-109) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc09g009010.2.1 (e_value=2e-134) genomic_reference:SL2.40ch09 gene_region:2362995-2365231 transcript_region:SL2.40ch09:2362995..2365231+ go_terms:GO:0051753,GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **-* D8T077_SELML)"; GO:0051753,GO:0016759 NbS00002100g0003.1 protein AED:0.31 eAED:0.31 QI:201|0.85|1|1|0.85|1|8|82|366; (*GB) gi|359490986|ref|XP_002277437.2| (e_value=8e-175) PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=8e-131) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=5e-146) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00006653g0009.1 protein AED:0.09 eAED:0.13 QI:79|0.5|0.4|1|0.25|0.4|5|20|716; (*GB) gi|310813975|gb|ADP30799.1| (e_value=0.0) nicotine uptake permease 2 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=3e-107) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=2e-108) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00006653g0008.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|206; (*GB) gi|310813973|gb|ADP30798.1| (e_value=4e-87) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=2e-42) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=2e-43) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=6e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00022438g0006.1 protein AED:0.17 eAED:0.19 QI:0|1|0|1|1|1|3|0|669; (*GB) gi|365222860|gb|AEW69782.1| (e_value=0.0) Hop-interacting protein THI007 [Solanum lycopersicum];; (*TAIR) AT4G10840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:6656614-6659033 FORWARD LENGTH=609;; (*ITAG) Solyc08g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2848726-2851059 transcript_region:SL2.40ch08:2848726..2851059- go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SKU4_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022438g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|1|1|4|0|548; (*GB) gi|147795448|emb|CAN65860.1| (e_value=0.0) hypothetical protein VITISV_014849 [Vitis vinifera];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=3e-145) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=2e-146) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc08g082810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62645836-62651991 transcript_region:SL2.40ch08:62645836..62651991- go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** B9RWS7_RICCO); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00002414g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.81|0.83|1|0.90|0.83|12|187|608; (*GB) gi|16904222|gb|AAL30818.1|AF435450_1 (e_value=0.0) calcium/calmodulin-dependent protein kinase CaMK1 [Nicotiana tabacum];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT5G24430.1 (e_value=0.0) | Symbols: | Calcium-dependent protein kinase (CDPK) family protein | chr5:8339390-8342913 REVERSE LENGTH=594;; (*ITAG) Solyc03g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45970606-45979188 transcript_region:SL2.40ch03:45970606..45979188+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase-like protein (AHRD V1 **** Q9FIM9_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00016449g0011.1 protein AED:0.25 eAED:0.25 QI:339|1|0.87|1|0.57|0.62|8|348|550; (*GB) gi|225463476|ref|XP_002273074.1| (e_value=5e-170) PREDICTED: phospho-N-acetylmuramoyl-pentapeptide-transferase homolog [Vitis vinifera];; (*SWP) sp|O49730|MRAY_ARATH (e_value=6e-109) Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog OS=Arabidopsis thaliana GN=ATTRANS 11 PE=2 SV=3;; (*TAIR) AT4G18270.1 (e_value=4e-110) | Symbols: ATTRANS11, TRANS11 | translocase 11 | chr4:10099364-10101897 REVERSE LENGTH=480;; (*ITAG) Solyc02g070560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34876652-34881371 transcript_region:SL2.40ch02:34876652..34881371+ go_terms:GO:0003824,GO:0015450 functional_description:"Phospho-N-acetylmuramoyl-pentapeptide-transferase (AHRD V1 ***- A0ZB89_NODSP); contains Interpro domain(s) IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase "; GO:0003824,GO:0015450 NbS00016449g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0.81|1|1|1|11|402|450; (*GB) gi|359483861|ref|XP_002276730.2| (e_value=1e-108) PREDICTED: la-related protein 6-like [Vitis vinifera];; (*SWP) sp|Q9BRS8|LARP6_HUMAN (e_value=9e-23) La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1;; (*TAIR) AT5G46250.1 (e_value=8e-84) | Symbols: | RNA-binding protein | chr5:18755388-18758056 FORWARD LENGTH=422;; (*ITAG) Solyc02g070550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34870137-34875497 transcript_region:SL2.40ch02:34870137..34875497+ go_terms:GO:0005515 functional_description:"La-related protein 6 (AHRD V1 *--- LARP6_HUMAN); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0005515 NbS00039641g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.66|1|1|1|3|0|239; (*GB) gi|53749464|gb|AAU90318.1| (e_value=3e-117) Alpha-expansin 1 precursor , putative [Solanum demissum];; (*SWP) sp|Q9C554|EXPA1_ARATH (e_value=2e-95) Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1;; (*TAIR) AT1G69530.2 (e_value=2e-96) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143051 FORWARD LENGTH=250;; (*ITAG) Solyc05g007830.2.1 (e_value=2e-106) genomic_reference:SL2.40ch05 gene_region:2281207-2283177 transcript_region:SL2.40ch05:2281207..2283177+ go_terms:GO:0005199 functional_description:"Expansin 2 (AHRD V1 ***- Q9FUM2_PRUAV); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00011081g0001.1 protein AED:0.05 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|255545852|ref|XP_002513986.1| (e_value=3e-59) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q84W40|ATL11_ARATH (e_value=5e-54) RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2;; (*TAIR) AT1G72200.1 (e_value=3e-55) | Symbols: | RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404;; (*ITAG) Solyc12g087860.1.1 (e_value=1e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024278g0012.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0|0|3|0|563; (*GB) gi|359477345|ref|XP_002278307.2| (e_value=0.0) PREDICTED: primary amine oxidase-like [Vitis vinifera];; (*SWP) sp|Q43077|AMO_PEA (e_value=1e-167) Primary amine oxidase OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT4G14940.1 (e_value=0.0) | Symbols: ATAO1, AO1 | amine oxidase 1 | chr4:8541879-8544304 FORWARD LENGTH=650;; (*ITAG) Solyc03g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:95840-98426 transcript_region:SL2.40ch03:95840..98426- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RSR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00024278g0001.1 protein AED:0.80 eAED:0.90 QI:62|0|0.5|1|0|0.5|2|0|100 NbS00024278g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.33|0.25|4|0|483; (*GB) gi|147822727|emb|CAN61764.1| (e_value=0.0) hypothetical protein VITISV_025411 [Vitis vinifera];; (*SWP) sp|Q9SBA7|STP8_ARATH (e_value=0.0) Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2;; (*TAIR) AT5G26250.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:9196758-9198681 FORWARD LENGTH=507;; (*ITAG) Solyc03g005140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:90058-92040 transcript_region:SL2.40ch03:90058..92040+ go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 1 (AHRD V1 ***- GTR1_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00012440g0010.1 protein AED:0.12 eAED:0.12 QI:55|0.92|0.92|1|0.84|0.78|14|410|694; (*GB) gi|359491515|ref|XP_002278822.2| (e_value=0.0) PREDICTED: uncharacterized protein Cbei_0202-like [Vitis vinifera];; (*SWP) sp|Q05627|Y202_CLOB8 (e_value=4e-96) Uncharacterized protein Cbei_0202 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=Cbei_0202 PE=4 SV=2;; (*TAIR) AT4G30720.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr4:14972212-14975461 REVERSE LENGTH=707;; (*ITAG) Solyc07g005870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:699869-707614 transcript_region:SL2.40ch07:699869..707614- go_terms:GO:0055114 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B9M683_GEOSF); contains Interpro domain(s) IPR002938 Monooxygenase, FAD-binding "; GO:0055114 NbS00012440g0009.1 protein AED:0.21 eAED:0.21 QI:69|0.95|0.85|1|0.95|0.95|21|282|1019; (*GB) gi|296083902|emb|CBI24290.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P35601|RFC1_MOUSE (e_value=3e-118) Replication factor C subunit 1 OS=Mus musculus GN=Rfc1 PE=1 SV=2;; (*TAIR) AT5G22010.1 (e_value=0.0) | Symbols: AtRFC1, RFC1 | replication factor C1 | chr5:7280632-7287037 REVERSE LENGTH=956;; (*ITAG) Solyc07g005880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:708202-721177 transcript_region:SL2.40ch07:708202..721177- go_terms:GO:0019904 functional_description:"DNA REPLICATION FACTOR C SUBUNIT (AHRD V1 *-*- Q8SRT8_ENCCU); contains Interpro domain(s) IPR012178 DNA replication factor C, large subunit "; GO:0019904 NbS00021585g0008.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0.33|0|4|0|382; (*GB) gi|255566791|ref|XP_002524379.1| (e_value=4e-52) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g078530.1.1 (e_value=3e-132) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:44621923-44623158 transcript_region:SL2.40ch03:44621923..44623158+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021585g0006.1 protein AED:0.40 eAED:0.45 QI:43|0|0|1|0|0.25|4|0|215; (*GB) gi|255566791|ref|XP_002524379.1| (e_value=2e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g078530.1.1 (e_value=6e-78) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:44621923-44623158 transcript_region:SL2.40ch03:44621923..44623158+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021585g0007.1 protein AED:0.44 eAED:0.48 QI:0|0|0|1|0|0|2|0|88; (*ITAG) Solyc03g078530.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:44621923-44623158 transcript_region:SL2.40ch03:44621923..44623158+ functional_description:"F-box family protein (AHRD V1 ***- B9HX54_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016088g0007.1 protein AED:0.28 eAED:0.28 QI:262|0.9|0.85|1|0.85|0.80|21|308|931; (*GB) gi|297745850|emb|CBI15906.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q642R9|RB3GP_XENLA (e_value=1e-57) Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis GN=rab3gap1 PE=2 SV=1;; (*TAIR) AT5G58510.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23648287-23654421 REVERSE LENGTH=963;; (*ITAG) Solyc06g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44393293-44408442 transcript_region:SL2.40ch06:44393293..44408442+ go_terms:GO:0005097 functional_description:"Rab3 GTPase-activating protein catalytic subunit (AHRD V1 *-** RB3GP_XENLA)"; GO:0005097 NbS00034974g0007.1 protein AED:0.09 eAED:0.12 QI:75|1|0.66|1|1|1|3|0|240; (*GB) gi|27529824|dbj|BAC53927.1| (e_value=1e-20) hypothetical protein [Nicotiana tabacum];; (*ITAG) Solyc01g009660.1.1 (e_value=7e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3897377-3899846 transcript_region:SL2.40ch01:3897377..3899846- functional_description:"Low-temperature-induced 65 kDa protein (AHRD V1 *-*- LTI65_ARATH)"; NbS00034974g0006.1 protein AED:0.29 eAED:0.30 QI:0|0.5|0.66|1|1|1|3|430|137; (*GB) gi|22857914|gb|AAL91667.1| (e_value=1e-97) pollen specific actin-depolymerizing factor 2 [Nicotiana tabacum];; (*SWP) sp|Q67ZM4|ADF7_ARATH (e_value=4e-91) Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1;; (*TAIR) AT4G25590.1 (e_value=3e-92) | Symbols: ADF7 | actin depolymerizing factor 7 | chr4:13059137-13060050 REVERSE LENGTH=137;; (*ITAG) Solyc06g035980.2.1 (e_value=7e-91) genomic_reference:SL2.40ch06 gene_region:22031465-22032402 transcript_region:SL2.40ch06:22031465..22032402+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00003838g0004.1 protein AED:0.11 eAED:0.11 QI:74|1|1|1|0.6|0.5|6|454|417; (*GB) gi|255556701|ref|XP_002519384.1| (e_value=5e-121) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g102670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83171469-83174012 transcript_region:SL2.40ch01:83171469..83174012- go_terms:GO:0006281 functional_description:"HhH-GPD (AHRD V1 *--- Q2INY1_ANADE); contains Interpro domain(s) IPR011257 DNA glycosylase "; GO:0006281 NbS00003838g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.75|1|0.66|0.5|4|109|319; (*ITAG) Solyc10g047040.1.1 (e_value=6e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:34709751-34711043 transcript_region:SL2.40ch10:34709751..34711043+ go_terms:GO:0008270 functional_description:"Zinc finger protein zfs1 (AHRD V1 *-*- ZFS1_SCHPO); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00003838g0017.1 protein AED:0.17 eAED:0.17 QI:233|0.8|0.63|1|0.7|0.63|11|0|642; (*GB) gi|359486141|ref|XP_002266723.2| (e_value=0.0) PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3KTM0|FRO7_ARATH (e_value=0.0) Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1;; (*TAIR) AT5G49740.1 (e_value=0.0) | Symbols: ATFRO7, FRO7 | ferric reduction oxidase 7 | chr5:20205549-20208628 REVERSE LENGTH=747;; (*ITAG) Solyc01g102610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00003838g0027.1 protein AED:0.19 eAED:0.19 QI:207|0.5|0.4|1|1|0.8|5|0|164; (*GB) gi|255556713|ref|XP_002519390.1| (e_value=6e-24) ferric-chelate reductase, putative [Ricinus communis];; (*SWP) sp|Q3KTM0|FRO7_ARATH (e_value=2e-19) Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1;; (*TAIR) AT5G49740.1 (e_value=2e-20) | Symbols: ATFRO7, FRO7 | ferric reduction oxidase 7 | chr5:20205549-20208628 REVERSE LENGTH=747;; (*ITAG) Solyc01g102610.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00003838g0016.1 protein AED:0.23 eAED:0.29 QI:87|0.68|0.35|1|0.68|0.64|17|0|1079; (*GB) gi|359486141|ref|XP_002266723.2| (e_value=0.0) PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3KTM0|FRO7_ARATH (e_value=0.0) Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1;; (*TAIR) AT5G49740.1 (e_value=0.0) | Symbols: ATFRO7, FRO7 | ferric reduction oxidase 7 | chr5:20205549-20208628 REVERSE LENGTH=747;; (*ITAG) Solyc01g102610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00037614g0004.1 protein AED:0.11 eAED:0.11 QI:284|1|1|1|1|1|7|423|486; (*GB) gi|317106652|dbj|BAJ53156.1| (e_value=0.0) JHL10I11.2 [Jatropha curcas];; (*SWP) sp|Q9C9C4|ENO1_ARATH (e_value=0.0) Enolase 1, chloroplastic OS=Arabidopsis thaliana GN=ENO1 PE=1 SV=1;; (*TAIR) AT1G74030.1 (e_value=0.0) | Symbols: ENO1 | enolase 1 | chr1:27839465-27841901 REVERSE LENGTH=477;; (*ITAG) Solyc03g114500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58538109-58542525 transcript_region:SL2.40ch03:58538109..58542525+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- A9P745_HELAN); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00058372g0001.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|1|1|3|0|281; (*GB) gi|224077724|ref|XP_002305380.1| (e_value=6e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGI2|SCPDL_ARATH (e_value=1e-99) Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 OS=Arabidopsis thaliana GN=At5g39410 PE=1 SV=2;; (*TAIR) AT5G39410.1 (e_value=9e-101) | Symbols: | Saccharopine dehydrogenase | chr5:15768415-15770274 REVERSE LENGTH=454;; (*ITAG) Solyc02g088490.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:45148014-45151287 transcript_region:SL2.40ch02:45148014..45151287+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase (AHRD V1 ***- B6T3D2_MAIZE); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00022151g0012.1 protein AED:0.30 eAED:0.30 QI:16|1|0|1|1|1|2|0|90; (*GB) gi|147802219|emb|CAN68267.1| (e_value=6e-21) hypothetical protein VITISV_029908 [Vitis vinifera];; (*TAIR) AT2G34570.1 (e_value=3e-17) | Symbols: MEE21 | PIN domain-like family protein | chr2:14563048-14564681 REVERSE LENGTH=281;; (*ITAG) Solyc08g008040.2.1 (e_value=5e-18) genomic_reference:SL2.40ch08 gene_region:2534141-2538271 transcript_region:SL2.40ch08:2534141..2538271+ functional_description:"rRNA-processing protein UTP23 homolog (AHRD V1 *--- D3PH70_9MAXI); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; NbS00022151g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.25|1|1|1|4|0|187; (*GB) gi|17017255|gb|AAL33585.1|AF440271_1 (e_value=1e-122) aquaporin [Nicotiana tabacum];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=3e-121) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=4e-112) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc08g008050.2.1 (e_value=2e-124) genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00022151g0009.1 protein AED:0.16 eAED:0.62 QI:39|0|0|1|1|1|2|0|54 NbS00022151g0011.1 protein AED:0.17 eAED:0.17 QI:182|0.66|0.5|1|0.33|0|4|0|607; (*GB) gi|225432189|ref|XP_002268620.1| (e_value=3e-119) PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera];; (*ITAG) Solyc05g053200.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62466099-62469667 transcript_region:SL2.40ch05:62466099..62469667+ go_terms:GO:0008270,GO:0005622 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FI74_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270,GO:0005622 NbS00059256g0001.1 protein AED:0.28 eAED:0.29 QI:63|0|0.5|1|0|0.5|2|0|188; (*GB) gi|225448962|ref|XP_002269306.1| (e_value=7e-55) PREDICTED: uncharacterized protein LOC100258145 [Vitis vinifera];; (*TAIR) AT2G39170.1 (e_value=1e-35) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc02g033070.1.1 (e_value=8e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:20439825-20440430 transcript_region:SL2.40ch02:20439825..20440430+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00054533g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|1|3|0|259; (*GB) gi|350538315|ref|NP_001234081.1| (e_value=1e-173) expansin A4 precursor [Solanum lycopersicum];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=1e-153) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=1e-154) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc09g010860.2.1 (e_value=2e-176) genomic_reference:SL2.40ch09 gene_region:4181506-4184618 transcript_region:SL2.40ch09:4181506..4184618- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00054533g0010.1 protein AED:0.50 eAED:0.63 QI:0|1|0|1|1|1|2|0|70 NbS00014149g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|327|372; (*GB) gi|359496637|ref|XP_003635287.1| (e_value=5e-170) PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|O81902|PUB8_ARATH (e_value=4e-130) U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1;; (*TAIR) AT4G21350.1 (e_value=3e-131) | Symbols: B80, PUB8 | plant U-box 8 | chr4:11356143-11357267 REVERSE LENGTH=374;; (*ITAG) Solyc02g079740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38763924-38765039 transcript_region:SL2.40ch02:38763924..38765039+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (Fragment) (AHRD V1 ***- B1P3P0_ARAHA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00001482g0010.1 protein AED:0.19 eAED:0.20 QI:18|0|0|1|0.25|0.4|5|0|962; (*GB) gi|225432742|ref|XP_002279134.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Vitis vinifera];; (*SWP) sp|Q9LUJ2|PP249_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1;; (*TAIR) AT3G22690.2 (e_value=0.0) | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842;; (*ITAG) Solyc09g082450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63567141-63569654 transcript_region:SL2.40ch09:63567141..63569654- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00001482g0009.1 protein AED:0.24 eAED:0.24 QI:25|1|1|1|1|1|2|189|176; (*GB) gi|224099821|ref|XP_002311634.1| (e_value=3e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUJ3|RDM1_ARATH (e_value=4e-46) Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1;; (*TAIR) AT3G22680.1 (e_value=3e-47) | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1 | chr3:8019785-8020374 FORWARD LENGTH=163;; (*ITAG) Solyc09g082480.1.1 (e_value=2e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63589809-63590293 transcript_region:SL2.40ch09:63589809..63590293- go_terms:GO:0043621 functional_description:"Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950 "; GO:0043621 NbS00047637g0005.1 protein AED:0.10 eAED:0.11 QI:868|1|0.75|1|1|1|4|0|499; (*GB) gi|343887277|dbj|BAK61823.1| (e_value=8e-147) protein phosphatase 2c [Citrus unshiu];; (*SWP) sp|O04719|P2C77_ARATH (e_value=1e-136) Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1;; (*TAIR) AT5G57050.1 (e_value=1e-137) | Symbols: ABI2, AtABI2 | Protein phosphatase 2C family protein | chr5:23087720-23089303 FORWARD LENGTH=423;; (*ITAG) Solyc07g040990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48808707-48811933 transcript_region:SL2.40ch07:48808707..48811933+ go_terms:GO:0005515 functional_description:"Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0005515 NbS00047637g0006.1 protein AED:0.06 eAED:0.07 QI:88|0|0.5|1|0|0|2|0|503; (*GB) gi|350536071|ref|NP_001234228.1| (e_value=0.0) salt responsive protein 2 [Solanum lycopersicum];; (*SWP) sp|B0BN95|HARB1_RAT (e_value=5e-20) Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1;; (*TAIR) AT5G12010.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc07g040960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00015306g0005.1 protein AED:0.08 eAED:0.08 QI:263|0.8|0.83|1|0.6|0.83|6|209|389; (*GB) gi|21068893|dbj|BAB93003.1| (e_value=0.0) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q9SDT1|POR_DAUCA (e_value=0.0) Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1;; (*TAIR) AT5G54190.1 (e_value=0.0) | Symbols: PORA | protochlorophyllide oxidoreductase A | chr5:21991183-21992773 REVERSE LENGTH=405;; (*ITAG) Solyc10g006900.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1335152-1338824 transcript_region:SL2.40ch10:1335152..1338824+ go_terms:GO:0004745 functional_description:"Protochlorophyllide reductase (AHRD V1 ***- Q8LAV9_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0004745 NbS00023745g0003.1 protein AED:0.11 eAED:0.11 QI:196|0.83|0.85|1|0.83|0.85|7|105|456; (*GB) gi|13752462|gb|AAK38667.1|AF353615_1 (e_value=0.0) glutamate decarboxylase isozyme 3 [Nicotiana tabacum];; (*SWP) sp|Q9ZPS3|DCE4_ARATH (e_value=0.0) Glutamate decarboxylase 4 OS=Arabidopsis thaliana GN=GAD4 PE=2 SV=1;; (*TAIR) AT2G02010.1 (e_value=0.0) | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474375-476495 REVERSE LENGTH=493;; (*ITAG) Solyc04g025530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:21170555-21175117 transcript_region:SL2.40ch04:21170555..21175117- go_terms:GO:0004351,GO:0005516 functional_description:"Glutamate decarboxylase (AHRD V1 **** Q1I1D8_CITSI); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0004351,GO:0005516 NbS00044289g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|359479625|ref|XP_003632305.1| (e_value=3e-61) PREDICTED: uncharacterized protein LOC100855206 [Vitis vinifera];; (*TAIR) AT4G14830.1 (e_value=2e-41) | Symbols: HSP1 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22530.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510983-8511441 FORWARD LENGTH=152;; (*ITAG) Solyc09g065370.1.1 (e_value=3e-89) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59066135-59066623 transcript_region:SL2.40ch09:59066135..59066623- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00000392g0006.1 protein AED:0.00 eAED:0.00 QI:651|1|1|1|1|1|2|164|490; (*GB) gi|225439168|ref|XP_002268382.1| (e_value=0.0) PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase [Vitis vinifera];; (*SWP) sp|Q94AA9|XGD1_ARATH (e_value=4e-15) Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2;; (*TAIR) AT3G45400.1 (e_value=0.0) | Symbols: | exostosin family protein | chr3:16651963-16653479 FORWARD LENGTH=475;; (*ITAG) Solyc10g081430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61818805-61821211 transcript_region:SL2.40ch10:61818805..61821211- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 **-- D7LML7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00000392g0007.1 protein AED:0.20 eAED:0.34 QI:0|0|0|1|0|0.2|5|0|282; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-62) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc05g053200.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62466099-62469667 transcript_region:SL2.40ch05:62466099..62469667+ go_terms:GO:0008270,GO:0005622 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FI74_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270,GO:0005622 NbS00009492g0001.1 protein AED:0.05 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|324; (*GB) gi|365222928|gb|AEW69816.1| (e_value=8e-50) Hop-interacting protein THI119 [Solanum lycopersicum];; (*SWP) sp|Q84Y18|CXIP4_ARATH (e_value=1e-36) CAX-interacting protein 4 OS=Arabidopsis thaliana GN=CXIP4 PE=1 SV=2;; (*TAIR) AT2G28910.1 (e_value=1e-37) | Symbols: CXIP4 | CAX interacting protein 4 | chr2:12415992-12416990 REVERSE LENGTH=332;; (*ITAG) Solyc08g005450.1.1 (e_value=1e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:331751-332734 transcript_region:SL2.40ch08:331751..332734+ go_terms:GO:0008270 functional_description:"CAX-interacting protein 4 (AHRD V1 *--- CXIP4_ARATH); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00022976g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.77|1|0.87|0.88|9|0|1296; (*GB) gi|225462062|ref|XP_002269575.1| (e_value=0.0) PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera];; (*TAIR) AT3G13300.1 (e_value=0.0) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1344;; (*ITAG) Solyc10g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00022976g0009.1 protein AED:0.30 eAED:0.30 QI:229|1|1|1|0.92|0.93|15|472|467; (*GB) gi|225463508|ref|XP_002263911.1| (e_value=0.0) PREDICTED: uridine kinase-like protein 4 [Vitis vinifera];; (*SWP) sp|O65583|UKL4_ARATH (e_value=0.0) Uridine kinase-like protein 4 OS=Arabidopsis thaliana GN=UKL4 PE=1 SV=2;; (*TAIR) AT4G26510.2 (e_value=0.0) | Symbols: UKL4 | uridine kinase-like 4 | chr4:13384503-13387920 FORWARD LENGTH=469;; (*ITAG) Solyc07g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00022976g0002.1 protein AED:0.39 eAED:0.39 QI:32|0.83|0.84|1|1|1|13|197|338; (*GB) gi|365222920|gb|AEW69812.1| (e_value=0.0) Hop-interacting protein THI111 [Solanum lycopersicum];; (*SWP) sp|Q754R2|DDI1_ASHGO (e_value=6e-62) DNA damage-inducible protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DDI1 PE=3 SV=1;; (*TAIR) AT3G13235.3 (e_value=9e-169) | Symbols: | ubiquitin family protein | chr3:4271492-4274348 REVERSE LENGTH=413;; (*ITAG) Solyc10g005890.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:683370-690823 transcript_region:SL2.40ch10:683370..690823- go_terms:GO:0031593,GO:0000149 functional_description:"DNA-damage inducible protein DDI1-like (AHRD V1 ***- Q8LF25_ARATH); contains Interpro domain(s) IPR019103 Peptidase aspartic, eukaryotic predicted "; GO:0031593,GO:0000149 NbS00037517g0008.1 protein AED:0.11 eAED:0.11 QI:122|0.75|0.44|1|0.25|0.22|9|504|747; (*GB) gi|147846688|emb|CAN80644.1| (e_value=2e-73) hypothetical protein VITISV_016915 [Vitis vinifera];; (*TAIR) AT1G14770.2 (e_value=6e-13) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:5086867-5088437 REVERSE LENGTH=429;; (*ITAG) Solyc03g063720.2.1 (e_value=2e-131) genomic_reference:SL2.40ch03 gene_region:33035437-33037712 transcript_region:SL2.40ch03:33035437..33037712+ go_terms:GO:0008270 functional_description:"Os11g0482500 protein (Fragment) (AHRD V1 *-*- C7J993_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00037517g0006.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|359481780|ref|XP_002277662.2| (e_value=1e-42) PREDICTED: dehydration-responsive element-binding protein 2F-like [Vitis vinifera];; (*SWP) sp|Q9SVX5|DRE2F_ARATH (e_value=1e-30) Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1;; (*TAIR) AT3G57600.1 (e_value=8e-32) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:21332841-21333674 FORWARD LENGTH=277; NbC24217363g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|2058454|gb|AAB53255.1| (e_value=2e-79) CaMB-channel protein [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=1e-66) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=9e-68) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc03g007250.1.1 (e_value=7e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1812278-1812970 transcript_region:SL2.40ch03:1812278..1812970- functional_description:"CNGC5-like protein (Fragment) (AHRD V1 *-*- A5X8E1_9FABA); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00032991g0020.1 protein AED:0.21 eAED:0.26 QI:0|0.55|0.5|0.9|0.55|0.6|10|326|599; (*GB) gi|302141862|emb|CBI19065.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-57) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G38131.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:14293392-14296020 REVERSE LENGTH=589;; (*ITAG) Solyc11g013270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6174328-6179893 transcript_region:SL2.40ch11:6174328..6179893- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00032991g0021.1 protein AED:0.28 eAED:0.29 QI:211|0.83|0.57|1|0.5|0.57|7|0|861; (*GB) gi|359492410|ref|XP_002284392.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262634 [Vitis vinifera];; (*SWP) sp|Q54UL8|MPS1_DICDI (e_value=2e-70) Probable serine/threonine-protein kinase mps1 OS=Dictyostelium discoideum GN=mps1 PE=3 SV=1;; (*TAIR) AT1G77720.1 (e_value=0.0) | Symbols: PPK1 | putative protein kinase 1 | chr1:29210730-29213877 FORWARD LENGTH=777;; (*ITAG) Solyc11g013240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6138240-6153169 transcript_region:SL2.40ch11:6138240..6153169- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_PONAB); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032991g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|176|155; (*GB) gi|147822197|emb|CAN62174.1| (e_value=1e-56) hypothetical protein VITISV_027755 [Vitis vinifera];; (*TAIR) AT1G09070.1 (e_value=3e-19) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc11g013250.1.1 (e_value=8e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6158380-6158859 transcript_region:SL2.40ch11:6158380..6158859+ functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J5_CAPAN); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00032991g0022.1 protein AED:0.21 eAED:0.21 QI:241|0.5|0.66|1|0.5|0.33|3|437|286; (*GB) gi|58979188|gb|AAW83328.1| (e_value=4e-157) mitochondrial prohibitin 1 [Petunia x hybrida];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=4e-87) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=4e-144) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc11g010190.1.1 (e_value=3e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3269915-3270754 transcript_region:SL2.40ch11:3269915..3270754+ go_terms:GO:0016020 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00032991g0028.1 protein AED:0.22 eAED:0.31 QI:0|0|0|0.66|0.2|0.16|6|0|235; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-27) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=6e-50) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00032991g0029.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.16|1|1|6|0|323; (*ITAG) Solyc06g008150.2.1 (e_value=2e-11) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00019463g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.88|1|1|1|25|379|1079; (*GB) gi|147864402|emb|CAN80502.1| (e_value=0.0) hypothetical protein VITISV_007231 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=2e-102) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G39050.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc10g054080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50032317-50042929 transcript_region:SL2.40ch10:50032317..50042929- go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00019463g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|456; (*GB) gi|359474779|ref|XP_002280183.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At4g39110-like [Vitis vinifera];; (*SWP) sp|Q9T020|Y4391_ARATH (e_value=0.0) Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1;; (*TAIR) AT4G39110.1 (e_value=0.0) | Symbols: | Malectin/receptor-like protein kinase family protein | chr4:18222483-18225119 REVERSE LENGTH=878;; (*ITAG) Solyc01g109950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88534564-88537518 transcript_region:SL2.40ch01:88534564..88537518+ go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00019463g0003.1 protein AED:0.36 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|263; (*GB) gi|359474779|ref|XP_002280183.2| (e_value=5e-64) PREDICTED: probable receptor-like protein kinase At4g39110-like [Vitis vinifera];; (*SWP) sp|Q9T020|Y4391_ARATH (e_value=6e-60) Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1;; (*TAIR) AT4G39110.1 (e_value=5e-61) | Symbols: | Malectin/receptor-like protein kinase family protein | chr4:18222483-18225119 REVERSE LENGTH=878;; (*ITAG) Solyc10g054050.1.1 (e_value=1e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50009736-50012342 transcript_region:SL2.40ch10:50009736..50012342+ go_terms:GO:0004672 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM23_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00017022g0011.1 protein AED:0.03 eAED:0.03 QI:1136|0.75|0.8|1|0.5|0.8|5|232|271; (*GB) gi|255563056|ref|XP_002522532.1| (e_value=2e-81) calmodulin binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-26) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT3G15050.1 (e_value=9e-59) | Symbols: IQD10 | IQ-domain 10 | chr3:5066879-5067892 REVERSE LENGTH=259;; (*ITAG) Solyc10g008790.2.1 (e_value=3e-140) genomic_reference:SL2.40ch10 gene_region:2859728-2865652 transcript_region:SL2.40ch10:2859728..2865652- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6TIB2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00017022g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|133; (*GB) gi|57014020|ref|YP_173491.1| (e_value=6e-66) hypothetical protein NitaMp154 [Nicotiana tabacum];; (*ITAG) Solyc00g014850.1.1 (e_value=1e-68) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:11073759-11074070 transcript_region:SL2.40ch00:11073759..11074070- functional_description:"ORF86 (AHRD V1 ***- B6VJY4_VITVI)"; NbS00017022g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|350539854|ref|NP_001233783.1| (e_value=1e-60) TCP transcription factor 1 [Solanum lycopersicum];; (*SWP) sp|O82277|TCP10_ARATH (e_value=5e-34) Transcription factor TCP10 OS=Arabidopsis thaliana GN=TCP10 PE=1 SV=1;; (*TAIR) AT2G31070.1 (e_value=4e-35) | Symbols: TCP10 | TCP domain protein 10 | chr2:13220984-13222069 REVERSE LENGTH=361;; (*ITAG) Solyc10g008780.1.1 (e_value=3e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2855509-2857257 transcript_region:SL2.40ch10:2855509..2857257+ functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00017022g0008.1 protein AED:0.35 eAED:0.35 QI:230|0.75|0.6|1|0.75|0.8|5|23|106; (*GB) gi|296083708|emb|CBI23697.3| (e_value=3e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23530.1 (e_value=4e-35) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=3e-49) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00005276g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|135 NbS00005276g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.69|1|0.83|0.92|13|0|452; (*GB) gi|356529781|ref|XP_003533466.1| (e_value=0.0) PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max];; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=0.0) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=0.0) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc01g067590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68779437-68791512 transcript_region:SL2.40ch01:68779437..68791512- go_terms:GO:0019901,GO:0004679 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0019901,GO:0004679 NbS00005276g0006.1 protein AED:0.51 eAED:0.51 QI:0|0|0.2|0.2|1|1|5|262|59 NbS00001144g0005.1 protein AED:0.36 eAED:0.43 QI:0|1|0.5|1|1|1|2|0|136; (*GB) gi|162532861|gb|ABY16785.1| (e_value=4e-47) auxin-repressed protein [Nicotiana tabacum];; (*SWP) sp|Q05349|12KD_FRAAN (e_value=3e-23) Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1;; (*TAIR) AT1G28330.1 (e_value=9e-30) | Symbols: DRM1, DYL1 | dormancy-associated protein-like 1 | chr1:9934252-9935216 REVERSE LENGTH=122;; (*ITAG) Solyc02g077880.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:37291522-37292600 transcript_region:SL2.40ch02:37291522..37292600+ functional_description:"Auxin-repressed protein (AHRD V1 ***- Q6PXE1_9SOLN); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00001144g0008.1 protein AED:0.32 eAED:0.32 QI:209|0.85|0.87|1|0.71|0.75|8|377|434; (*GB) gi|111183164|gb|ABH07901.1| (e_value=2e-159) putative zinc finger protein [Solanum lycopersicum];; (*SWP) sp|Q9FKW0|RNG1A_ARATH (e_value=2e-52) Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2;; (*TAIR) AT5G44280.1 (e_value=1e-53) | Symbols: ATRING1A, RING1A | RING 1A | chr5:17836115-17839114 REVERSE LENGTH=522;; (*ITAG) Solyc02g077890.2.1 (e_value=3e-162) genomic_reference:SL2.40ch02 gene_region:37294135-37303313 transcript_region:SL2.40ch02:37294135..37303313- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *-*- B0WQV3_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type IPR017907 Zinc finger, RING-type, conserved site "; GO:0008270 NbS00002792g0006.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|0|0.33|3|0|193; (*GB) gi|147791954|emb|CAN75238.1| (e_value=2e-40) hypothetical protein VITISV_014204 [Vitis vinifera];; (*SWP) sp|Q9SYG9|CCX4_ARATH (e_value=2e-38) Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1;; (*TAIR) AT1G54115.1 (e_value=2e-39) | Symbols: ATCCX4, CCX4 | cation calcium exchanger 4 | chr1:20202118-20204052 FORWARD LENGTH=644;; (*ITAG) Solyc02g069710.2.1 (e_value=5e-63) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00048272g0004.1 protein AED:0.19 eAED:0.19 QI:463|0.90|0.91|1|0.81|0.75|12|409|334; (*GB) gi|357485823|ref|XP_003613199.1| (e_value=0.0) ATP-citrate synthase [Medicago truncatula];; (*SWP) sp|O22718|ACLA2_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1;; (*TAIR) AT1G60810.1 (e_value=0.0) | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388691-22390993 REVERSE LENGTH=423;; (*ITAG) Solyc05g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:141208-145022 transcript_region:SL2.40ch05:141208..145022- go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-2 (AHRD V1 **** D7KWP3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00032759g0001.1 protein AED:0.06 eAED:0.06 QI:231|0|0.66|1|0|0.66|3|358|578; (*GB) gi|225447488|ref|XP_002264832.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266500 [Vitis vinifera];; (*TAIR) AT2G04280.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480277-1481983 REVERSE LENGTH=568;; (*ITAG) Solyc12g006200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:740265-741998 transcript_region:SL2.40ch12:740265..741998+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010447g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.25|0|0.5|4|0|765; (*GB) gi|224098938|ref|XP_002311324.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11810.1 (e_value=6e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3727819-3728865 FORWARD LENGTH=348;; (*ITAG) Solyc05g012820.1.1 (e_value=4e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:5973817-5974791 transcript_region:SL2.40ch05:5973817..5974791- functional_description:"Unknown Protein (AHRD V1)"; NbS00010447g0101.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|0|287 NbS00042129g0003.1 protein AED:0.19 eAED:0.19 QI:108|1|1|1|0.66|0.5|4|346|220; (*GB) gi|298204564|emb|CBI23839.3| (e_value=1e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49755|TMEDA_HUMAN (e_value=6e-31) Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2;; (*TAIR) AT1G09580.1 (e_value=3e-92) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc01g104220.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:84431022-84435420 transcript_region:SL2.40ch01:84431022..84435420+ go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00037891g0002.1 protein AED:0.11 eAED:0.11 QI:214|1|1|1|1|1|3|277|174; (*GB) gi|224119774|ref|XP_002318159.1| (e_value=9e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|B9I3X5|CSPL3_POPTR (e_value=3e-54) CASP-like protein POPTRDRAFT_823430 OS=Populus trichocarpa GN=POPTRDRAFT_823430 PE=3 SV=1;; (*TAIR) AT4G25040.1 (e_value=5e-23) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:12868320-12869319 FORWARD LENGTH=170;; (*ITAG) Solyc06g072550.2.1 (e_value=3e-83) genomic_reference:SL2.40ch06 gene_region:41136237-41138675 transcript_region:SL2.40ch06:41136237..41138675- functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00006278g0008.1 protein AED:0.02 eAED:0.02 QI:159|1|1|1|0|0|2|139|92 NbS00006278g0009.1 protein AED:0.08 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.75|4|0|390; (*GB) gi|356562922|ref|XP_003549717.1| (e_value=0.0) PREDICTED: S-acyltransferase TIP1-like [Glycine max];; (*SWP) sp|Q52T38|ZDH22_ARATH (e_value=0.0) S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1;; (*TAIR) AT5G20350.1 (e_value=0.0) | Symbols: TIP1 | Ankyrin repeat family protein with DHHC zinc finger domain | chr5:6876772-6881102 FORWARD LENGTH=620;; (*ITAG) Solyc07g007430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016417,GO:0000035 NbS00006278g0007.1 protein AED:0.25 eAED:0.30 QI:0|0|0|1|0|0|2|0|400; (*GB) gi|133711801|gb|ABO36619.1| (e_value=3e-111) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=9e-25) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50150.1 (e_value=2e-31) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18595809-18597551 REVERSE LENGTH=509;; (*ITAG) Solyc10g079230.1.1 (e_value=6e-114) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00003481g0011.1 protein AED:0.22 eAED:0.23 QI:188|0.5|0.55|1|1|1|9|219|356; (*GB) gi|224103853|ref|XP_002313220.1| (e_value=3e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944L7|Y1480_ARATH (e_value=1e-36) Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1;; (*TAIR) AT1G07010.2 (e_value=1e-146) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:2152949-2154968 FORWARD LENGTH=385;; (*ITAG) Solyc06g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44450038-44454193 transcript_region:SL2.40ch06:44450038..44454193+ go_terms:GO:0004722 functional_description:"Serine-threonine protein phosphatase (AHRD V1 **-* Q5CPY7_CRYPV); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00003481g0009.1 protein AED:0.28 eAED:0.28 QI:478|0.25|0.6|1|0.25|0.2|5|257|450; (*GB) gi|297745817|emb|CBI15873.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q56YT0|LAC3_ARATH (e_value=4e-176) Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2;; (*TAIR) AT2G30210.1 (e_value=3e-177) | Symbols: LAC3 | laccase 3 | chr2:12887735-12889827 REVERSE LENGTH=570;; (*ITAG) Solyc06g082240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44437686-44440095 transcript_region:SL2.40ch06:44437686..44440095+ go_terms:GO:0004322 functional_description:"Laccase-13 (AHRD V1 ***- D7LZX9_ARALY); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00003481g0013.1 protein AED:0.13 eAED:0.22 QI:0|0|0|1|0|0|4|0|303; (*GB) gi|224137280|ref|XP_002322518.1| (e_value=2e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-17) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=8e-45) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc11g012420.1.1 (e_value=5e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5262685-5264885 transcript_region:SL2.40ch11:5262685..5264885- functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00026166g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.76|1|0.75|0.69|13|0|858; (*GB) gi|225444627|ref|XP_002277540.1| (e_value=0.0) PREDICTED: respiratory burst oxidase homolog protein E [Vitis vinifera];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=0.0) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.1 (e_value=0.0) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=926;; (*ITAG) Solyc07g042460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52919322-52925426 transcript_region:SL2.40ch07:52919322..52925426- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein E (AHRD V1 **** B2D0N7_HORVD); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00040283g0006.1 protein AED:0.14 eAED:0.14 QI:340|0.6|0.54|1|0.6|0.36|11|101|1593; (*GB) gi|359473545|ref|XP_002267770.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257864 [Vitis vinifera];; (*TAIR) AT1G24460.2 (e_value=2e-120) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1). | chr1:8666072-8672338 FORWARD LENGTH=1732;; (*ITAG) Solyc05g014200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7965137-7975357 transcript_region:SL2.40ch05:7965137..7975357- functional_description:"Myosin-like protein (AHRD V1 *-*- Q6K5K0_ORYSJ)"; NbS00011663g0004.1 protein AED:0.28 eAED:0.28 QI:26|0.5|0.4|1|1|1|5|0|417; (*GB) gi|225445196|ref|XP_002284247.1| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100250827 [Vitis vinifera];; (*TAIR) AT4G28990.2 (e_value=6e-36) | Symbols: | RNA-binding protein-related | chr4:14291205-14293018 FORWARD LENGTH=395;; (*ITAG) Solyc05g018340.2.1 (e_value=2e-126) genomic_reference:SL2.40ch05 gene_region:20573843-20579911 transcript_region:SL2.40ch05:20573843..20579911+ go_terms:GO:0005622 functional_description:"cDNA clone 001-201-C05 full insert sequence (AHRD V1 **-- B7EY91_ORYSJ); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00011663g0107.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.4|1|0.75|0.6|5|0|257 NbS00011663g0108.1 protein AED:0.25 eAED:0.25 QI:51|1|1|1|1|1|5|265|237 NbS00011663g0201.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|114 NbS00011663g0312.1 protein AED:0.16 eAED:0.16 QI:193|0.75|0.6|1|1|1|5|0|262 NbS00011663g0313.1 protein AED:0.17 eAED:0.17 QI:380|1|1|1|1|1|8|338|595 NbS00011663g0311.1 protein AED:0.28 eAED:0.28 QI:239|1|1|1|0.7|0.90|11|137|376 NbS00011663g0317.1 protein AED:0.52 eAED:0.60 QI:0|0|0|0.75|0.33|0.25|4|0|152 NbS00029193g0009.1 protein AED:0.10 eAED:0.10 QI:51|0.75|0.8|1|0.25|0.2|5|179|299; (*GB) gi|225431330|ref|XP_002277612.1| (e_value=1e-153) PREDICTED: peroxidase 64 [Vitis vinifera];; (*SWP) sp|Q43872|PER64_ARATH (e_value=6e-125) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=5e-126) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc02g083490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41449952-41451309 transcript_region:SL2.40ch02:41449952..41451309+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** A9PGX3_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00029193g0006.1 protein AED:0.12 eAED:0.17 QI:39|0.5|0.33|1|1|1|3|0|216; (*GB) gi|357483909|ref|XP_003612241.1| (e_value=2e-107) Peroxidase [Medicago truncatula];; (*SWP) sp|Q43872|PER64_ARATH (e_value=9e-89) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=7e-90) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc02g083480.2.1 (e_value=5e-119) genomic_reference:SL2.40ch02 gene_region:41447341-41448838 transcript_region:SL2.40ch02:41447341..41448838+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- A9PGX3_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00026081g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|224118064|ref|XP_002317723.1| (e_value=6e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27660.1 (e_value=2e-51) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc06g072460.1.1 (e_value=9e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41085510-41086622 transcript_region:SL2.40ch06:41085510..41086622+ go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0019992,GO:0020037 NbS00026081g0008.1 protein AED:0.12 eAED:0.12 QI:53|1|1|1|1|1|2|387|167; (*GB) gi|330318596|gb|AEC10965.1| (e_value=1e-69) 50S ribosomal protein L29 [Camellia sinensis];; (*SWP) sp|Q9FJP3|RK29_ARATH (e_value=3e-62) 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1;; (*TAIR) AT5G65220.1 (e_value=2e-63) | Symbols: | Ribosomal L29 family protein | chr5:26061301-26062506 FORWARD LENGTH=173;; (*ITAG) Solyc06g072470.2.1 (e_value=3e-89) genomic_reference:SL2.40ch06 gene_region:41086971-41088571 transcript_region:SL2.40ch06:41086971..41088571- go_terms:GO:0005840 functional_description:"50S ribosomal protein L29 (AHRD V1 ***- B6TS58_MAIZE); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0005840 NbS00042510g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.6|1|0.5|0.2|5|0|250; (*GB) gi|224108337|ref|XP_002314811.1| (e_value=7e-101) aquaporin, MIP family, NIP subfamily [Populus trichocarpa];; (*SWP) sp|P49173|NIP1_NICAL (e_value=8e-101) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37810.1 (e_value=3e-97) | Symbols: NIP4;1, NLM4 | NOD26-like intrinsic protein 4;1 | chr5:15045232-15047807 FORWARD LENGTH=283;; (*ITAG) Solyc05g008080.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2503662-2506273 transcript_region:SL2.40ch05:2503662..2506273+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00035331g0001.1 protein AED:0.64 eAED:0.81 QI:0|0|0|0.5|1|1|2|0|79; (*GB) gi|356543608|ref|XP_003540252.1| (e_value=7e-20) PREDICTED: uncharacterized protein RP120-like [Glycine max];; (*TAIR) AT5G22350.1 (e_value=7e-19) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00035331g0013.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|224138216|ref|XP_002326547.1| (e_value=3e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=2e-12) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.3 (e_value=2e-13) | Symbols: AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615748 FORWARD LENGTH=570;; (*ITAG) Solyc08g005270.2.1 (e_value=1e-66) genomic_reference:SL2.40ch08 gene_region:192513-198421 transcript_region:SL2.40ch08:192513..198421- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00035331g0016.1 protein AED:0.80 eAED:0.81 QI:0|0|0|0.33|0.5|0.66|3|0|77 NbS00035331g0014.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|57013966|ref|YP_173438.1| (e_value=8e-20) hypothetical protein NitaMp100 [Nicotiana tabacum];; (*SWP) sp|Q8S8U3|RR15_ATRBE (e_value=9e-20) 30S ribosomal protein S15, chloroplastic OS=Atropa belladonna GN=rps15 PE=3 SV=1;; (*ITAG) ATCG01120.1 (e_value=5e-19) | Symbols: RPS15 | chloroplast ribosomal protein S15 | chrC:123296-123562 REVERSE LENGTH=88; NbS00010342g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.66|1|1|1|6|0|867; (*GB) gi|225440346|ref|XP_002270206.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=1e-38) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT5G02430.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:526592-529839 FORWARD LENGTH=905;; (*ITAG) Solyc10g086430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64577978-64581524 transcript_region:SL2.40ch10:64577978..64581524+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00012086g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|1|1|4|0|344; (*GB) gi|27413549|gb|AAO11694.1| (e_value=0.0) Knotted-1-like homeobox protein H1 [Nicotiana tabacum];; (*SWP) sp|O22299|LET6_SOLLC (e_value=2e-145) Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1;; (*TAIR) AT1G62360.1 (e_value=2e-135) | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK homeobox transcription factor | chr1:23058796-23061722 REVERSE LENGTH=382;; (*ITAG) Solyc02g081120.2.1 (e_value=9e-146) genomic_reference:SL2.40ch02 gene_region:39767063-39773953 transcript_region:SL2.40ch02:39767063..39773953+ go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00008851g0006.1 protein AED:0.37 eAED:0.67 QI:0|0|0|0.85|0.16|0.42|7|0|421; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-25) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00042272g0001.1 protein AED:0.00 eAED:0.01 QI:340|1|0.5|1|0|0|2|0|804; (*GB) gi|224136189|ref|XP_002322265.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9QYI4|DJB12_MOUSE (e_value=4e-11) DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2;; (*TAIR) AT5G53150.1 (e_value=8e-88) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726;; (*ITAG) Solyc03g019640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:6600822-6607135 transcript_region:SL2.40ch03:6600822..6607135- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6JZX2_SCHJY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00042272g0007.1 protein AED:0.21 eAED:0.21 QI:147|0.25|0.2|1|0.25|0.4|5|0|584; (*GB) gi|224122040|ref|XP_002318735.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G14120.1 (e_value=2e-101) | Symbols: | Major facilitator superfamily protein | chr5:4556308-4558447 FORWARD LENGTH=579;; (*ITAG) Solyc03g019650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6609000-6612842 transcript_region:SL2.40ch03:6609000..6612842- functional_description:"Nodulin-like protein (AHRD V1 *-*- B6U8U8_MAIZE); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00009707g0011.1 protein AED:0.22 eAED:0.22 QI:246|1|1|1|0|0.14|7|394|181; (*GB) gi|115501471|dbj|BAF34209.1| (e_value=7e-133) ADP ribosylation factor [Nicotiana tabacum];; (*SWP) sp|P36397|ARF1_ARATH (e_value=1e-132) ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2;; (*TAIR) AT3G62290.3 (e_value=6e-134) | Symbols: ARFA1E | ADP-ribosylation factor A1E | chr3:23052287-23053545 FORWARD LENGTH=181;; (*ITAG) Solyc01g100860.2.1 (e_value=1e-133) genomic_reference:SL2.40ch01 gene_region:82524862-82533922 transcript_region:SL2.40ch01:82524862..82533922- go_terms:GO:0042802 functional_description:"ADP-ribosylation factor (AHRD V1 ***- D7KT27_ARALY); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0042802 NbS00009707g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.5|0.87|0.85|0.87|8|0|717; (*GB) gi|359477496|ref|XP_003631985.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854837 [Vitis vinifera];; (*SWP) sp|P59326|YTHD1_MOUSE (e_value=8e-56) YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1;; (*TAIR) AT1G48110.2 (e_value=7e-175) | Symbols: ECT7 | evolutionarily conserved C-terminal region 7 | chr1:17770339-17772806 REVERSE LENGTH=639;; (*ITAG) Solyc12g099090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00009707g0012.1 protein AED:0.31 eAED:0.31 QI:90|0.25|0.2|1|0.25|0.4|5|255|206; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=1e-19) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc02g027080.1.1 (e_value=6e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009707g0003.1 protein AED:0.31 eAED:0.31 QI:542|0|0.5|1|0|1|2|0|184; (*GB) gi|350536667|ref|NP_001234770.1| (e_value=2e-101) dihydrolipoamide dehydrogenase precursor [Solanum lycopersicum];; (*SWP) sp|Q9M5K3|DLDH1_ARATH (e_value=7e-97) Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2;; (*TAIR) AT1G48030.2 (e_value=5e-98) | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase 1 | chr1:17717432-17719141 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=5e-104) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00029712g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|533; (*GB) gi|225447596|ref|XP_002272334.1| (e_value=0.0) PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=0.0) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=0.0) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g047950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56497775-56499412 transcript_region:SL2.40ch07:56497775..56499412+ go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00048301g0003.1 protein AED:0.04 eAED:0.04 QI:141|1|1|1|0.33|0.42|7|294|208; (*GB) gi|225453321|ref|XP_002269907.1| (e_value=3e-121) PREDICTED: rac-like GTP-binding protein 7 [Vitis vinifera];; (*SWP) sp|Q38912|RAC3_ARATH (e_value=2e-111) Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1;; (*TAIR) AT4G35020.3 (e_value=1e-112) | Symbols: RAC3 | RAC-like 3 | chr4:16673176-16674540 FORWARD LENGTH=198;; (*ITAG) Solyc01g088780.2.1 (e_value=3e-133) genomic_reference:SL2.40ch01 gene_region:75285688-75289374 transcript_region:SL2.40ch01:75285688..75289374+ go_terms:GO:0003924 functional_description:"Rho-related GTP-binding protein RhoC (AHRD V1 **-- RHOC_PONAB); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00042311g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.85|1|0.5|0.71|7|497|302; (*GB) gi|357444557|ref|XP_003592556.1| (e_value=5e-103) E3 ubiquitin-protein ligase MARCH2 [Medicago truncatula];; (*TAIR) AT2G01275.2 (e_value=6e-87) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259;; (*ITAG) Solyc05g008390.2.1 (e_value=1e-157) genomic_reference:SL2.40ch05 gene_region:2756559-2760072 transcript_region:SL2.40ch05:2756559..2760072- go_terms:GO:0005515 functional_description:"RING zinc finger-containing protein (AHRD V1 *--- Q54MR8_DICDI); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00038917g0007.1 protein AED:0.11 eAED:0.11 QI:442|0.83|0.61|0.92|0.75|0.76|13|0|1725; (*GB) gi|225432324|ref|XP_002276252.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244340 [Vitis vinifera];; (*TAIR) AT3G62900.1 (e_value=2e-63) | Symbols: | CW-type Zinc Finger | chr3:23248868-23254810 REVERSE LENGTH=1465;; (*ITAG) Solyc01g067600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68830465-68839206 transcript_region:SL2.40ch01:68830465..68839206+ go_terms:GO:0008270 functional_description:"CW-type Zinc Finger family protein expressed (AHRD V1 *-*- Q10LI9_ORYSJ); contains Interpro domain(s) IPR011124 Zinc finger, CW-type "; GO:0008270 NbS00038917g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.75|1|0.66|1|4|8|341; (*GB) gi|255551703|ref|XP_002516897.1| (e_value=0.0) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-83) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT3G21420.1 (e_value=3e-173) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7541579-7543221 FORWARD LENGTH=364;; (*ITAG) Solyc01g067620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68844695-68846621 transcript_region:SL2.40ch01:68844695..68846621+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00019033g0008.1 protein AED:0.06 eAED:0.06 QI:286|1|1|1|0.83|0.71|7|334|592; (*GB) gi|224089756|ref|XP_002308808.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55600.3 (e_value=5e-146) | Symbols: | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr5:22522232-22524796 REVERSE LENGTH=663;; (*ITAG) Solyc07g065370.2.1 (e_value=8e-159) genomic_reference:SL2.40ch07 gene_region:64381656-64386573 transcript_region:SL2.40ch07:64381656..64386573- go_terms:GO:0003677,GO:0003723 functional_description:"Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *--- Q69J33_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003677,GO:0003723 NbS00019033g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|224089763|ref|XP_002308809.1| (e_value=3e-48) hypothetical protein POPTRDRAFT_417902 [Populus trichocarpa];; (*TAIR) AT1G32583.1 (e_value=3e-47) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11787351-11788103 FORWARD LENGTH=179;; (*ITAG) Solyc11g012650.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5424760-5426139 transcript_region:SL2.40ch11:5424760..5426139- functional_description:"TPD1 (AHRD V1 *-*- Q6TLJ2_ARATH)"; NbS00019033g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|122; (*GB) gi|255563526|ref|XP_002522765.1| (e_value=2e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09950.1 (e_value=6e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3060354-3060632 REVERSE LENGTH=92;; (*ITAG) Solyc07g065410.1.1 (e_value=2e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64402753-64403058 transcript_region:SL2.40ch07:64402753..64403058+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019033g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|255563788|ref|XP_002522895.1| (e_value=1e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16410.1 (e_value=5e-45) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9262019-9262576 REVERSE LENGTH=185;; (*ITAG) Solyc11g012640.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5423279-5423815 transcript_region:SL2.40ch11:5423279..5423815+ functional_description:"Ycf33 protein (AHRD V1 *-*- Q8DIU8_THEEB); contains Interpro domain(s) IPR008470 Protein of unknown function DUF751 "; NbS00004933g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|355; (*GB) gi|224137922|ref|XP_002322685.1| (e_value=7e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14480.1 (e_value=3e-22) | Symbols: | Protein kinase superfamily protein | chr4:8330081-8331544 REVERSE LENGTH=487;; (*ITAG) Solyc10g017710.1.1 (e_value=4e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:5773968-5775455 transcript_region:SL2.40ch10:5773968..5775455- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q172D4_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004933g0013.1 protein AED:0.08 eAED:0.08 QI:247|1|1|1|0.83|1|7|233|362; (*GB) gi|296089136|emb|CBI38839.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8N0V8|GET3_COPC7 (e_value=3e-121) ATPase GET3 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=GET3 PE=3 SV=1;; (*TAIR) AT1G01910.4 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:313595-315831 REVERSE LENGTH=353;; (*ITAG) Solyc10g017810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6006840-6020076 transcript_region:SL2.40ch10:6006840..6020076- go_terms:GO:0005515,GO:0016887 functional_description:"ATPase (AHRD V1 **** D3E0U6_METRM); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515,GO:0016887 NbS00004933g0002.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.63|0.90|1|1|11|0|1142; (*GB) gi|350538889|ref|NP_001234108.1| (e_value=0.0) phospholipase PLDb2 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=0.0) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=0.0) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc10g017650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5527501-5533630 transcript_region:SL2.40ch10:5527501..5533630+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR015679 Phospholipase D "; GO:0005515,GO:0004630 NbS00004933g0016.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|84 NbS00027155g0008.1 protein AED:0.03 eAED:0.03 QI:240|1|1|1|1|1|5|291|538; (*GB) gi|283131248|dbj|BAI63296.1| (e_value=0.0) double WRKY type transfactor [Nicotiana benthamiana];; (*SWP) sp|Q8S8P5|WRK33_ARATH (e_value=1e-112) Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2;; (*TAIR) AT2G38470.1 (e_value=9e-114) | Symbols: WRKY33, ATWRKY33 | WRKY DNA-binding protein 33 | chr2:16108476-16110539 FORWARD LENGTH=519;; (*ITAG) Solyc06g066370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38062111-38065102 transcript_region:SL2.40ch06:38062111..38065102+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 1 (AHRD V1 **** C9DHZ0_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00027155g0003.1 protein AED:0.22 eAED:0.43 QI:180|0|0.5|1|0|0.5|2|367|73 NbS00049490g0005.1 protein AED:0.66 eAED:0.71 QI:39|0|0|0.8|0.5|0.6|5|0|119 NbS00016452g0013.1 protein AED:0.33 eAED:0.34 QI:0|0.81|0.75|1|0.18|0.33|12|1073|288; (*GB) gi|225430120|ref|XP_002284652.1| (e_value=3e-158) PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=2e-69) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT5G25560.1 (e_value=3e-152) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:8899486-8901391 FORWARD LENGTH=308;; (*ITAG) Solyc08g067960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54228758-54232365 transcript_region:SL2.40ch08:54228758..54232365+ go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q337P2_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00016452g0012.1 protein AED:0.11 eAED:0.11 QI:269|1|1|1|0.5|0.33|3|380|390; (*GB) gi|225430122|ref|XP_002284674.1| (e_value=7e-104) PREDICTED: uncharacterized protein LOC100247517 [Vitis vinifera];; (*TAIR) AT5G11460.1 (e_value=7e-42) | Symbols: | Protein of unknown function (DUF581) | chr5:3657064-3658388 REVERSE LENGTH=344;; (*ITAG) Solyc08g067970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54233326-54235015 transcript_region:SL2.40ch08:54233326..54235015- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00015494g0003.1 protein AED:0.00 eAED:0.00 QI:209|1|1|1|0.75|0.6|5|320|392; (*GB) gi|225426358|ref|XP_002270995.1| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100254757 [Vitis vinifera];; (*TAIR) AT1G64385.1 (e_value=8e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:23900309-23901956 FORWARD LENGTH=351;; (*ITAG) Solyc08g082230.2.1 (e_value=3e-57) genomic_reference:SL2.40ch08 gene_region:62241419-62242676 transcript_region:SL2.40ch08:62241419..62242676+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035477g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.42|1|0.5|0.71|7|0|257; (*GB) gi|255567363|ref|XP_002524661.1| (e_value=2e-88) sirohydrochlorin ferrochelatase, putative [Ricinus communis];; (*TAIR) AT1G50170.1 (e_value=9e-77) | Symbols: ATSIRB, SIRB | sirohydrochlorin ferrochelatase B | chr1:18582087-18583514 FORWARD LENGTH=225;; (*ITAG) Solyc02g086560.2.1 (e_value=6e-119) genomic_reference:SL2.40ch02 gene_region:43801536-43803839 transcript_region:SL2.40ch02:43801536..43803839+ go_terms:GO:0009236 functional_description:"Cobalamin (Vitamin B12) biosynthesis CbiX protein (AHRD V1 *--- A6C9M5_9PLAN); contains Interpro domain(s) IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX "; GO:0009236 NbS00001590g0001.1 protein AED:0.13 eAED:0.13 QI:414|0.8|0.33|1|0.8|0.66|6|0|234; (*GB) gi|225426757|ref|XP_002282540.1| (e_value=9e-144) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=3e-133) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.1 (e_value=2e-134) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=699;; (*ITAG) Solyc12g056440.1.1 (e_value=1e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47720136-47731546 transcript_region:SL2.40ch12:47720136..47731546+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_DANRE); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0055085 NbS00051497g0002.1 protein AED:0.28 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|348167268|gb|AEP68530.1| (e_value=1e-37) Sip1 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=4e-33) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.1 (e_value=2e-34) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245662-9246833 FORWARD LENGTH=259;; (*ITAG) Solyc05g054220.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:63324752-63330929 transcript_region:SL2.40ch05:63324752..63330929- go_terms:GO:0019901 functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 **** C1BJ92_OSMMO); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00022205g0001.1 protein AED:0.36 eAED:0.41 QI:33|0|0|0.66|1|1|3|0|489; (*GB) gi|297739697|emb|CBI29879.3| (e_value=1e-151) unnamed protein product [Vitis vinifera];; (*SWP) sp|P15398|RPA1_SCHPO (e_value=5e-39) DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2;; (*TAIR) AT3G57660.1 (e_value=4e-126) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00051016g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|147862982|emb|CAN82996.1| (e_value=0.0) hypothetical protein VITISV_022195 [Vitis vinifera];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=2e-11) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT4G11570.2 (e_value=2e-170) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373;; (*ITAG) Solyc08g081030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61325427-61326569 transcript_region:SL2.40ch08:61325427..61326569- go_terms:GO:0016787,GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IA (AHRD V1 *-*- D9WQP9_STRHY); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787,GO:0008152 NbS00032687g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|179; (*ITAG) Solyc07g065920.2.1 (e_value=4e-14) genomic_reference:SL2.40ch07 gene_region:64725051-64727923 transcript_region:SL2.40ch07:64725051..64727923+ go_terms:GO:0003676 functional_description:"Ferredoxin-fold anticodon-binding domain-containing protein 1 (AHRD V1 *--* FDXA1_HUMAN); contains Interpro domain(s) IPR019446 Domain of unknown function DUF2431 "; GO:0003676 NbS00050584g0005.1 protein AED:0.32 eAED:0.32 QI:380|0.5|0.33|1|0|0.33|3|0|476; (*GB) gi|255545228|ref|XP_002513675.1| (e_value=9e-135) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=1e-22) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT5G52430.1 (e_value=5e-95) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:21283093-21285045 REVERSE LENGTH=438;; (*ITAG) Solyc03g025290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7114324-7118700 transcript_region:SL2.40ch03:7114324..7118700- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7MRR7_ARALY)"; NbS00032066g0002.1 protein AED:0.12 eAED:0.12 QI:770|0.5|0.33|1|1|1|3|481|818; (*GB) gi|225450657|ref|XP_002278421.1| (e_value=5e-98) PREDICTED: uncharacterized protein LOC100240780 [Vitis vinifera];; (*TAIR) AT3G05670.1 (e_value=5e-82) | Symbols: | RING/U-box protein | chr3:1653888-1657022 FORWARD LENGTH=883;; (*ITAG) Solyc01g100130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81986149-81990012 transcript_region:SL2.40ch01:81986149..81990012+ go_terms:GO:0008270 functional_description:"PHD-finger family protein (AHRD V1 *-*- B6U0S2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00026973g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|531; (*GB) gi|225454363|ref|XP_002276073.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Vitis vinifera];; (*SWP) sp|O82363|PP203_ARATH (e_value=2e-161) Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E39 PE=2 SV=1;; (*TAIR) AT2G46050.1 (e_value=1e-162) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:18939262-18941034 FORWARD LENGTH=590;; (*ITAG) Solyc01g094850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78016895-78018703 transcript_region:SL2.40ch01:78016895..78018703+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00026973g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.78|0.73|0.93|0.42|0.6|15|0|826; (*GB) gi|225454359|ref|XP_002276054.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258534 [Vitis vinifera];; (*SWP) sp|A6NDV4|TMM8B_HUMAN (e_value=3e-11) Transmembrane protein 8B OS=Homo sapiens GN=TMEM8B PE=1 SV=2;; (*TAIR) AT2G46060.1 (e_value=0.0) | Symbols: | transmembrane protein-related | chr2:18941355-18945000 REVERSE LENGTH=807;; (*ITAG) Solyc01g094860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78019473-78027351 transcript_region:SL2.40ch01:78019473..78027351- functional_description:"Transmembrane protein 8B (AHRD V1 *-*- TMM8B_HUMAN)"; NbS00026973g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.4|0.6|1|1|5|412|212; (*GB) gi|171854683|dbj|BAG16531.1| (e_value=3e-81) putative zinc finger family protein [Capsicum chinense];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=7e-22) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT4G00335.2 (e_value=2e-36) | Symbols: RHB1A | RING-H2 finger B1A | chr4:146866-147962 FORWARD LENGTH=190;; (*ITAG) Solyc01g094840.2.1 (e_value=4e-84) genomic_reference:SL2.40ch01 gene_region:78010335-78012388 transcript_region:SL2.40ch01:78010335..78012388- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003771g0004.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|223; (*ITAG) Solyc00g272810.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:20641054-20641779 transcript_region:SL2.40ch00:20641054..20641779- go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00003771g0017.1 protein AED:0.25 eAED:0.26 QI:0|0.69|0.5|1|0.53|0.57|14|0|778; (*GB) gi|359488066|ref|XP_002263799.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244360 [Vitis vinifera];; (*SWP) sp|Q61687|ATRX_MOUSE (e_value=1e-51) Transcriptional regulator ATRX OS=Mus musculus GN=Atrx PE=1 SV=3;; (*TAIR) AT1G08600.2 (e_value=0.0) | Symbols: ATRX | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2724562-2733431 FORWARD LENGTH=1479;; (*ITAG) Solyc04g050150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44804160-44840698 transcript_region:SL2.40ch04:44804160..44840698- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 7 (AHRD V1 *--- CHD7_CHICK); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00003771g0003.1 protein AED:0.40 eAED:0.40 QI:72|1|0.5|1|0|0.5|2|0|187; (*GB) gi|225454973|ref|XP_002277891.1| (e_value=7e-74) PREDICTED: uncharacterized protein LOC100256226 [Vitis vinifera];; (*TAIR) AT1G13810.1 (e_value=8e-46) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:4734088-4735164 FORWARD LENGTH=303;; (*ITAG) Solyc10g081050.1.1 (e_value=5e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00003771g0016.1 protein AED:0.47 eAED:0.47 QI:0|0.75|0.6|0.8|1|1|5|0|166; (*GB) gi|255561985|ref|XP_002522001.1| (e_value=2e-54) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G08600.1 (e_value=2e-44) | Symbols: ATRX, CHR20 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2724562-2733431 FORWARD LENGTH=1458;; (*ITAG) Solyc04g050160.2.1 (e_value=3e-69) genomic_reference:SL2.40ch04 gene_region:44845692-44849727 transcript_region:SL2.40ch04:44845692..44849727- functional_description:"Os10g0457700 protein (Fragment) (AHRD V1 ***- Q0IX86_ORYSJ)"; NbS00027160g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.33|0.5|4|0|699; (*GB) gi|255573590|ref|XP_002527719.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G19090.1 (e_value=2e-106) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr2:8265178-8267879 REVERSE LENGTH=814;; (*ITAG) Solyc07g047830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56391629-56398920 transcript_region:SL2.40ch07:56391629..56398920+ functional_description:"Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00027160g0005.1 protein AED:0.27 eAED:0.27 QI:177|0|0.5|1|0|0|2|0|80; (*GB) gi|224120664|ref|XP_002330921.1| (e_value=6e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15802.1 (e_value=3e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5156578-5157520 REVERSE LENGTH=99;; (*ITAG) Solyc07g047840.2.1 (e_value=8e-34) genomic_reference:SL2.40ch07 gene_region:56399756-56402164 transcript_region:SL2.40ch07:56399756..56402164- functional_description:"Unknown Protein (AHRD V1)"; NbS00053225g0008.1 protein AED:0.30 eAED:0.30 QI:311|0.78|0.73|1|0.78|0.73|15|307|1048; (*GB) gi|255544141|ref|XP_002513133.1| (e_value=0.0) DNA repair helicase rad5,16, putative [Ricinus communis];; (*SWP) sp|O60177|YG42_SCHPO (e_value=2e-99) Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=2 SV=1;; (*TAIR) AT1G50410.1 (e_value=0.0) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr1:18672828-18677365 FORWARD LENGTH=981;; (*ITAG) Solyc02g050280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:25311503-25328863 transcript_region:SL2.40ch02:25311503..25328863+ go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--* CHD3_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00053225g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|501; (*GB) gi|225463766|ref|XP_002267930.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=3e-176) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT3G20015.1 (e_value=2e-177) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6978746-6980158 REVERSE LENGTH=470;; (*ITAG) Solyc00g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:16437-18189 transcript_region:SL2.40ch00:16437..18189+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00029792g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|89; (*ITAG) Solyc05g055370.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64190970-64191221 transcript_region:SL2.40ch05:64190970..64191221+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029792g0014.1 protein AED:0.18 eAED:0.18 QI:218|1|1|1|0.66|0.42|7|105|624; (*GB) gi|255585982|ref|XP_002533661.1| (e_value=3e-70) hypothetical protein RCOM_0152200 [Ricinus communis];; (*TAIR) AT3G52240.1 (e_value=2e-19) | Symbols: | unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:19372902-19375799 REVERSE LENGTH=680;; (*ITAG) Solyc05g055360.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64185938-64190195 transcript_region:SL2.40ch05:64185938..64190195+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029792g0015.1 protein AED:0.14 eAED:0.14 QI:0|1|0.77|1|0.87|0.77|9|246|395; (*GB) gi|225447197|ref|XP_002277241.1| (e_value=4e-169) PREDICTED: ribonuclease Z, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8L633|RNZC_ARATH (e_value=8e-158) Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1;; (*TAIR) AT2G04530.1 (e_value=6e-159) | Symbols: CPZ, TRZ2 | Metallo-hydrolase/oxidoreductase superfamily protein | chr2:1576808-1578611 FORWARD LENGTH=354;; (*ITAG) Solyc05g055350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64180131-64184890 transcript_region:SL2.40ch05:64180131..64184890- go_terms:GO:0042781 functional_description:"Ribonuclease Z family protein (AHRD V1 ***- D0LN77_HALO1)"; GO:0042781 NbS00029792g0001.1 protein AED:0.34 eAED:0.91 QI:127|0|0.5|1|0|0.5|2|0|266; (*GB) gi|255576192|ref|XP_002528990.1| (e_value=4e-117) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5HZH2|TSR3_MOUSE (e_value=2e-62) Probable ribosome biogenesis protein C16orf42 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G10070.1 (e_value=2e-106) | Symbols: | RNase L inhibitor protein-related | chr5:3148684-3150324 REVERSE LENGTH=264; NbS00029633g0009.1 protein AED:0.14 eAED:0.25 QI:0|0.57|0.37|1|0.28|0.37|8|0|265; (*GB) gi|89574428|gb|ABD77426.1| (e_value=4e-106) MADS-box protein 9 [Petunia x hybrida];; (*SWP) sp|Q38847|AGL15_ARATH (e_value=1e-48) Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1;; (*TAIR) AT5G13790.1 (e_value=1e-49) | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449128-4450802 REVERSE LENGTH=268;; (*ITAG) Solyc01g087990.2.1 (e_value=4e-100) genomic_reference:SL2.40ch01 gene_region:74590648-74596854 transcript_region:SL2.40ch01:74590648..74596854- go_terms:GO:0005515 functional_description:"MADS-box transcription factor 3 (AHRD V1 ***- D3U2H2_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515 NbS00029633g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|308; (*GB) gi|224104117|ref|XP_002313325.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g087980.2.1 (e_value=1e-109) genomic_reference:SL2.40ch01 gene_region:74589488-74590737 transcript_region:SL2.40ch01:74589488..74590737+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020784g0001.1 protein AED:0.25 eAED:0.30 QI:3|0|0|1|0|0|4|0|200; (*ITAG) Solyc05g021240.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26737791-26739174 transcript_region:SL2.40ch05:26737791..26739174- functional_description:"Unknown Protein (AHRD V1)"; NbS00014961g0006.1 protein AED:0.09 eAED:0.09 QI:138|1|0.85|1|0.83|0.85|7|239|247; (*GB) gi|388494638|gb|AFK35385.1| (e_value=7e-115) unknown [Medicago truncatula];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=1e-78) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT4G34960.1 (e_value=6e-103) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:16648865-16650646 FORWARD LENGTH=224;; (*ITAG) Solyc01g111360.2.1 (e_value=5e-135) genomic_reference:SL2.40ch01 gene_region:89397602-89402091 transcript_region:SL2.40ch01:89397602..89402091+ go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** D7MDH2_ARALY); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00014961g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=8e-66) hypothetical protein [Nicotiana benthamiana];; (*SWP) sp|P13240|DR206_PEA (e_value=1e-17) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT2G21100.1 (e_value=1e-43) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:9048687-9049336 REVERSE LENGTH=187;; (*ITAG) Solyc02g032030.1.1 (e_value=4e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:18016671-18017243 transcript_region:SL2.40ch02:18016671..18017243- functional_description:"Disease resistance response (AHRD V1 ***- D7L1G5_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00052365g0009.1 protein AED:0.25 eAED:0.31 QI:0|1|0.25|1|0.66|0.5|4|0|337; (*GB) gi|359483604|ref|XP_002271903.2| (e_value=2e-43) PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=1e-21) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G29380.1 (e_value=2e-38) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:10284209-10285671 FORWARD LENGTH=315;; (*ITAG) Solyc02g071200.2.1 (e_value=9e-70) genomic_reference:SL2.40ch02 gene_region:35261261-35263321 transcript_region:SL2.40ch02:35261261..35263321+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00052365g0008.1 protein AED:0.45 eAED:0.85 QI:0|0|0|1|1|0.5|4|0|74; (*GB) gi|19774137|gb|AAL99045.1|AF487527_1 (e_value=6e-22) D1 protease-like protein precursor [Nicotiana plumbaginifolia];; (*TAIR) AT5G46390.2 (e_value=6e-20) | Symbols: | Peptidase S41 family protein | chr5:18816612-18819148 FORWARD LENGTH=489;; (*ITAG) Solyc02g071190.2.1 (e_value=9e-24) genomic_reference:SL2.40ch02 gene_region:35251500-35259662 transcript_region:SL2.40ch02:35251500..35259662+ go_terms:GO:0004252 functional_description:"Carboxyl-terminal-processing protease (AHRD V1 ***- B6SPN8_MAIZE); contains Interpro domain(s) IPR004447 Peptidase S41A, C-terminal protease "; GO:0004252 NbS00052365g0010.1 protein AED:0.36 eAED:0.36 QI:232|0.37|0.44|0.88|0.37|0.33|9|0|260; (*GB) gi|225463388|ref|XP_002273366.1| (e_value=6e-64) PREDICTED: uncharacterized protein LOC100265908 [Vitis vinifera];; (*TAIR) AT1G29390.1 (e_value=7e-65) | Symbols: COR314-TM2, COR413IM2 | cold regulated 314 thylakoid membrane 2 | chr1:10286409-10287878 REVERSE LENGTH=226;; (*ITAG) Solyc02g071210.2.1 (e_value=5e-114) genomic_reference:SL2.40ch02 gene_region:35264074-35268444 transcript_region:SL2.40ch02:35264074..35268444- functional_description:"Cold acclimation protein COR413-like (AHRD V1 *-*- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 "; NbS00009522g0007.1 protein AED:0.15 eAED:0.15 QI:115|0.92|0.96|1|0.88|0.92|27|626|935; (*GB) gi|296085954|emb|CBI31395.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GTR4|PULA1_ARATH (e_value=0.0) Pullulanase 1, chloroplastic OS=Arabidopsis thaliana GN=PU1 PE=1 SV=2;; (*TAIR) AT5G04360.1 (e_value=0.0) | Symbols: ATPU1, ATLDA, PU1, LDA | limit dextrinase | chr5:1221566-1228399 FORWARD LENGTH=965;; (*ITAG) Solyc11g008050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2256207-2264573 transcript_region:SL2.40ch11:2256207..2264573- go_terms:GO:0005975 functional_description:"Glycogen debranching enzyme (AHRD V1 *-*- GLGX_YERPG); contains Interpro domain(s) IPR006047 Glycosyl hydrolase, family 13, catalytic region "; GO:0005975 NbS00009522g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|1786136|dbj|BAA19111.1| (e_value=4e-110) PEThy;ZPT2-6 [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=2e-31) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT5G04390.1 (e_value=6e-36) | Symbols: | C2H2-type zinc finger family protein | chr5:1239166-1240254 FORWARD LENGTH=362;; (*ITAG) Solyc05g055500.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64268900-64269988 transcript_region:SL2.40ch05:64268900..64269988- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00009522g0008.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|77; (*ITAG) Solyc11g008070.1.1 (e_value=9e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2269773-2270795 transcript_region:SL2.40ch11:2269773..2270795- functional_description:"Protein FAM126B (AHRD V1 *--- F126B_PONAB); contains Interpro domain(s) IPR018619 Hyccin "; NbS00027408g0003.1 protein AED:0.48 eAED:0.48 QI:539|0.66|0.25|1|0.33|0.75|4|0|173; (*ITAG) Solyc07g066420.2.1 (e_value=2e-11) genomic_reference:SL2.40ch07 gene_region:65076198-65085928 transcript_region:SL2.40ch07:65076198..65085928+ go_terms:GO:0003676,GO:0006457,GO:0008270,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase-like protein (AHRD V1 *-*- D0NAF5_PHYIN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003676,GO:0006457,GO:0008270,GO:0000166 NbS00036188g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|292|78 NbS00036188g0009.1 protein AED:0.11 eAED:0.11 QI:402|1|0.88|1|0.62|0.66|9|0|395; (*GB) gi|225465923|ref|XP_002270290.1| (e_value=0.0) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-177) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT3G07940.1 (e_value=2e-178) | Symbols: | Calcium-dependent ARF-type GTPase activating protein family | chr3:2529542-2531368 FORWARD LENGTH=385;; (*ITAG) Solyc08g043140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29871906-29876489 transcript_region:SL2.40ch08:29871906..29876489- go_terms:GO:0032312,GO:0055114 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--- AGAP3_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312,GO:0055114 NbS00049545g0005.1 protein AED:0.19 eAED:0.23 QI:117|0|0.5|1|0|0|2|295|35 NbS00049545g0007.1 protein AED:0.25 eAED:0.33 QI:0|0|0|0.75|0.33|0.75|4|0|346; (*GB) gi|255543823|ref|XP_002512974.1| (e_value=1e-21) hypothetical protein RCOM_1449530 [Ricinus communis];; (*SWP) sp|A2WY46|EAR1_ORYSI (e_value=2e-13) Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1;; (*TAIR) AT5G07930.3 (e_value=3e-19) | Symbols: MCT2 | MEI2 C-terminal RRM only like 2 | chr5:2530865-2532333 FORWARD LENGTH=294;; (*ITAG) Solyc01g110200.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88729920-88730997 transcript_region:SL2.40ch01:88729920..88730997+ functional_description:"MEI2-like RNA binding protein (AHRD V1 *--- Q652K6_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; NbC26078908g0001.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|523; (*GB) gi|133711808|gb|ABO36626.1| (e_value=1e-21) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*ITAG) Solyc00g255510.1.1 (e_value=5e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20235387-20236924 transcript_region:SL2.40ch00:20235387..20236924- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00036320g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|646; (*GB) gi|359494119|ref|XP_003634722.1| (e_value=1e-144) PREDICTED: uncharacterized protein LOC100852441 [Vitis vinifera];; (*TAIR) AT1G32120.1 (e_value=4e-109) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63767805-63769997 transcript_region:SL2.40ch07:63767805..63769997- functional_description:"Aminotransferase-like protein (AHRD V1 *--- Q68UQ8_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00035562g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|92; (*TAIR) AT4G01810.1 (e_value=1e-15) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc09g055810.1.1 (e_value=7e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:40994970-40995209 transcript_region:SL2.40ch09:40994970..40995209- functional_description:"Unknown Protein (AHRD V1)"; NbS00035562g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|0.85|1|0.83|0.57|7|0|351; (*GB) gi|225448689|ref|XP_002280469.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At1g06890 [Vitis vinifera];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=2e-177) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT1G06890.2 (e_value=2e-178) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:2111728-2114038 REVERSE LENGTH=357;; (*ITAG) Solyc06g049070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28838199-28842033 transcript_region:SL2.40ch06:28838199..28842033+ go_terms:GO:0008514 functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00038226g0005.1 protein AED:0.23 eAED:0.23 QI:86|1|1|1|0.6|0.5|6|356|134; (*GB) gi|76161008|gb|ABA40467.1| (e_value=2e-75) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9T043|RL142_ARATH (e_value=5e-68) 60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1;; (*TAIR) AT4G27090.1 (e_value=4e-69) | Symbols: | Ribosomal protein L14 | chr4:13594104-13595187 REVERSE LENGTH=134;; (*ITAG) Solyc06g083820.2.1 (e_value=6e-79) genomic_reference:SL2.40ch06 gene_region:45415855-45418135 transcript_region:SL2.40ch06:45415855..45418135+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00038226g0008.1 protein AED:0.21 eAED:0.26 QI:81|1|1|1|0.85|0.87|8|253|147; (*GB) gi|351724657|ref|NP_001237321.1| (e_value=7e-70) uncharacterized protein LOC100306343 [Glycine max];; (*SWP) sp|Q941D5|VPS2C_ARATH (e_value=4e-67) Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1;; (*TAIR) AT1G03950.1 (e_value=3e-68) | Symbols: VPS2.3 | vacuolar protein sorting-associated protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210;; (*ITAG) Solyc02g069680.2.1 (e_value=6e-58) genomic_reference:SL2.40ch02 gene_region:34096946-34101392 transcript_region:SL2.40ch02:34096946..34101392+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6TQT7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00024674g0007.1 protein AED:0.02 eAED:0.02 QI:178|1|1|1|1|1|3|201|257; (*GB) gi|224110630|ref|XP_002315584.1| (e_value=2e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=5e-61) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT1G04040.1 (e_value=2e-101) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr1:1042564-1043819 REVERSE LENGTH=271;; (*ITAG) Solyc09g090600.2.1 (e_value=9e-169) genomic_reference:SL2.40ch09 gene_region:65417313-65419033 transcript_region:SL2.40ch09:65417313..65419033- go_terms:GO:0003993 functional_description:"Acid phosphatase-like protein (AHRD V1 **-- Q9M0F4_ARATH); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00024674g0010.1 protein AED:0.21 eAED:0.35 QI:0|0.5|0|0.8|0.5|0.6|5|0|258; (*GB) gi|68165948|gb|AAY87906.1| (e_value=3e-74) caleosin B [Sesamum indicum];; (*SWP) sp|Q9SQ57|PXG_SESIN (e_value=4e-73) Peroxygenase OS=Sesamum indicum GN=SOP1 PE=1 SV=1;; (*TAIR) AT4G26740.1 (e_value=3e-66) | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473791-13475278 REVERSE LENGTH=245;; (*ITAG) Solyc09g090590.2.1 (e_value=1e-90) genomic_reference:SL2.40ch09 gene_region:65415210-65417059 transcript_region:SL2.40ch09:65415210..65417059+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **** A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00010733g0003.1 protein AED:0.26 eAED:0.28 QI:0|0|0|0.75|0.66|0.5|4|0|466; (*GB) gi|356543766|ref|XP_003540331.1| (e_value=5e-123) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max];; (*SWP) sp|O64477|Y2913_ARATH (e_value=4e-70) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=3e-71) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g053220.1.1 (e_value=1e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00010445g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0.25|0.75|1|1|4|99|114; (*GB) gi|296086075|emb|CBI31516.3| (e_value=2e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46297|RS23_FRAAN (e_value=1e-33) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT3G09680.1 (e_value=9e-34) | Symbols: | Ribosomal protein S12/S23 family protein | chr3:2969197-2970291 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=5e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00005913g0001.1 protein AED:0.27 eAED:0.27 QI:23|0.62|0.76|1|0.93|0.88|17|378|608; (*GB) gi|359483345|ref|XP_003632941.1| (e_value=0.0) PREDICTED: aspartic proteinase isoform 2 [Vitis vinifera];; (*SWP) sp|O04057|ASPR_CUCPE (e_value=0.0) Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc02g032940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20185974-20192184 transcript_region:SL2.40ch02:20185974..20192184- go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q8L6A8_THECC); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbC25027380g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|289657792|gb|ADD14637.1| (e_value=6e-48) expansin precursor, partial [Solanum tuberosum];; (*SWP) sp|O80622|EXP15_ARATH (e_value=1e-40) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=1e-41) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc03g115890.2.1 (e_value=3e-48) genomic_reference:SL2.40ch03 gene_region:59540713-59542201 transcript_region:SL2.40ch03:59540713..59542201+ go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005199 NbS00013601g0001.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|71; (*GB) gi|297739264|emb|CBI28915.3| (e_value=3e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G52855.1 (e_value=5e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19683137-19683343 REVERSE LENGTH=68;; (*ITAG) Solyc07g054470.1.1 (e_value=4e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60113746-60113952 transcript_region:SL2.40ch07:60113746..60113952- functional_description:"Unknown Protein (AHRD V1)"; NbS00022842g0019.1 protein AED:0.08 eAED:0.08 QI:215|1|1|1|0.75|0.8|5|120|527; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=0.0) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00022842g0017.1 protein AED:0.17 eAED:0.17 QI:26|1|0.91|1|0.81|0.83|12|769|970; (*GB) gi|225437328|ref|XP_002267393.1| (e_value=0.0) PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera];; (*SWP) sp|P54278|PMS2_HUMAN (e_value=1e-91) Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2;; (*TAIR) AT4G02460.1 (e_value=0.0) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00022842g0014.1 protein AED:0.17 eAED:0.17 QI:922|1|1|1|1|1|2|196|76; (*GB) gi|255548449|ref|XP_002515281.1| (e_value=3e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47370.1 (e_value=9e-21) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr2:19439130-19440281 REVERSE LENGTH=330;; (*ITAG) Solyc01g079410.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:70996670-71002457 transcript_region:SL2.40ch01:70996670..71002457- functional_description:"SMP-30/Gluconolaconase/LRE domain protein (AHRD V1 *-*- D2QD53_SPILD); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00022842g0020.1 protein AED:0.11 eAED:0.11 QI:14|0.85|0.86|1|0.92|0.93|15|311|683; (*GB) gi|350536471|ref|NP_001234760.1| (e_value=0.0) EZ1 protein [Solanum lycopersicum];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=3e-90) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=3e-91) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00041172g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|190607537|gb|ACE79431.1| (e_value=5e-37) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-26) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=5e-16) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00041172g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|109; (*ITAG) Solyc08g005500.2.1 (e_value=3e-19) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00034180g0002.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.33|1|1|3|0|126 NbS00020650g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|0|0.33|3|0|827; (*GB) gi|224113403|ref|XP_002316485.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=6e-14) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT3G52490.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc11g006650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1258943-1261938 transcript_region:SL2.40ch11:1258943..1261938- go_terms:GO:0019538 functional_description:"Heat shock protein 101 (AHRD V1 *-*- Q3L1D0_VITVI); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00021942g0005.1 protein AED:0.12 eAED:0.14 QI:164|0.94|0.89|1|0.83|0.94|19|0|946; (*GB) gi|359486877|ref|XP_002273191.2| (e_value=0.0) PREDICTED: armadillo repeat-containing kinesin-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q0DV28|ARK1_ORYSJ (e_value=0.0) Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2;; (*TAIR) AT3G54870.1 (e_value=0.0) | Symbols: MRH2, ARK1, CAE1 | Armadillo/beta-catenin repeat family protein / kinesin motor family protein | chr3:20330806-20335823 FORWARD LENGTH=941;; (*ITAG) Solyc11g008350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2551602-2567405 transcript_region:SL2.40ch11:2551602..2567405- go_terms:GO:0008017,GO:0003779 functional_description:"Kinesin-like protein (AHRD V1 *-*- D0NDH4_PHYIN); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017,GO:0003779 NbS00018497g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|255543290|ref|XP_002512708.1| (e_value=4e-59) Photosystem II 11 kDa protein precursor, putative [Ricinus communis];; (*SWP) sp|Q9LR64|Y1360_ARATH (e_value=1e-60) Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis thaliana GN=At1g03600 PE=1 SV=1;; (*TAIR) AT1G03600.1 (e_value=1e-61) | Symbols: PSB27 | photosystem II family protein | chr1:898916-899440 FORWARD LENGTH=174;; (*ITAG) Solyc07g054290.1.1 (e_value=2e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59964421-59965014 transcript_region:SL2.40ch07:59964421..59965014- functional_description:"Photosystem II family protein (AHRD V1 *-*- D7KCG4_ARALY)"; NbS00008820g0005.1 protein AED:0.32 eAED:0.32 QI:117|1|1|1|0.5|0.33|3|301|93; (*GB) gi|226502959|ref|NP_001142814.1| (e_value=3e-40) uncharacterized protein LOC100275193 [Zea mays];; (*TAIR) AT4G39235.1 (e_value=6e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18268514-18269034 FORWARD LENGTH=86;; (*ITAG) Solyc01g109680.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:88334992-88335716 transcript_region:SL2.40ch01:88334992..88335716- functional_description:"Unknown Protein (AHRD V1)"; NbS00008820g0002.1 protein AED:0.09 eAED:0.10 QI:0|0|0.5|1|0|0.5|2|124|81; (*GB) gi|357456275|ref|XP_003598418.1| (e_value=3e-31) RADIALIS [Medicago truncatula];; (*TAIR) AT4G39250.1 (e_value=4e-32) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc04g080500.2.1 (e_value=1e-34) genomic_reference:SL2.40ch04 gene_region:62254318-62254971 transcript_region:SL2.40ch04:62254318..62254971- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00055303g0004.1 protein AED:0.28 eAED:0.28 QI:93|1|0.66|1|0|0.33|3|0|243; (*GB) gi|158564576|gb|ABW74476.1| (e_value=8e-40) unknown [Paeonia suffruticosa];; (*TAIR) AT1G68490.1 (e_value=7e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc04g007220.2.1 (e_value=2e-64) genomic_reference:SL2.40ch04 gene_region:913039-915859 transcript_region:SL2.40ch04:913039..915859- functional_description:"Unknown Protein (AHRD V1)"; NbS00023566g0005.1 protein AED:0.15 eAED:0.16 QI:261|0.69|0.71|0.92|0.76|0.64|14|0|608; (*GB) gi|225434548|ref|XP_002277103.1| (e_value=0.0) PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00023566g0008.1 protein AED:0.19 eAED:0.21 QI:28|0.75|0.6|1|0.25|0.4|5|269|255; (*GB) gi|224105945|ref|XP_002313988.1| (e_value=1e-141) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58600.1 (e_value=1e-117) | Symbols: PMR5, TBL44 | Plant protein of unknown function (DUF828) | chr5:23683944-23685679 REVERSE LENGTH=402;; (*ITAG) Solyc06g007170.2.1 (e_value=1e-162) genomic_reference:SL2.40ch06 gene_region:1231308-1237447 transcript_region:SL2.40ch06:1231308..1237447+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00060069g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|225440870|ref|XP_002276587.1| (e_value=5e-66) PREDICTED: uncharacterized protein LOC100244210 [Vitis vinifera];; (*TAIR) AT2G36220.1 (e_value=7e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15192556-15193347 FORWARD LENGTH=263;; (*ITAG) Solyc09g009840.1.1 (e_value=4e-131) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:3332891-3333757 transcript_region:SL2.40ch09:3332891..3333757- functional_description:"Calcium/calmodulin protein kinase (AHRD V1 *-*- Q84ZT8_TOBAC)"; NbS00004346g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|254; (*GB) gi|224070829|ref|XP_002303254.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9WTR7|SC11C_RAT (e_value=5e-63) Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3;; (*TAIR) AT1G52600.1 (e_value=2e-91) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180;; (*ITAG) Solyc12g006540.1.1 (e_value=4e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1050794-1055944 transcript_region:SL2.40ch12:1050794..1055944+ go_terms:GO:0016020 functional_description:"Signal peptidase complex catalytic subunit SEC11A (AHRD V1 ***- C1BS39_9MAXI); contains Interpro domain(s) IPR001733 Peptidase S26B, eukaryotic signal peptidase "; GO:0016020 NbS00004346g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.71|1|1|1|7|0|639; (*GB) gi|147811086|emb|CAN61351.1| (e_value=0.0) hypothetical protein VITISV_023503 [Vitis vinifera];; (*SWP) sp|Q9M2E8|HDG1_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1;; (*TAIR) AT3G61150.1 (e_value=0.0) | Symbols: HDG1, HD-GL2-1 | homeodomain GLABROUS 1 | chr3:22630769-22634875 FORWARD LENGTH=808;; (*ITAG) Solyc03g026070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7855770-7860225 transcript_region:SL2.40ch03:7855770..7860225- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-8 (AHRD V1 *-*- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00021355g0006.1 protein AED:0.05 eAED:0.05 QI:184|1|1|1|1|1|4|242|428; (*GB) gi|350535176|ref|NP_001234692.1| (e_value=0.0) protein phosphatase 2C AHG3 homolog [Solanum lycopersicum];; (*SWP) sp|P49598|P2C37_ARATH (e_value=1e-136) Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1;; (*TAIR) AT3G11410.1 (e_value=9e-138) | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 2CA | chr3:3584181-3585649 REVERSE LENGTH=399;; (*ITAG) Solyc03g096670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52436558-52438511 transcript_region:SL2.40ch03:52436558..52438511+ go_terms:GO:0004722,GO:0008022 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 *-** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00021355g0007.1 protein AED:0.46 eAED:0.85 QI:0|0|0|1|1|1|2|0|73 NbS00021355g0009.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|4|0|110; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-17) hypothetical protein [Nicotiana tabacum]; NbS00015149g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|224092920|ref|XP_002309754.1| (e_value=6e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DR04|RTNLQ_ARATH (e_value=2e-85) Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1;; (*TAIR) AT2G20590.1 (e_value=2e-86) | Symbols: | Reticulon family protein | chr2:8867243-8869166 REVERSE LENGTH=431;; (*ITAG) Solyc07g053700.2.1 (e_value=3e-150) genomic_reference:SL2.40ch07 gene_region:59455869-59458997 transcript_region:SL2.40ch07:59455869..59458997- go_terms:GO:0005783 functional_description:"Reticulon-like protein B17 (AHRD V1 *-*- RTNLQ_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00015149g0016.1 protein AED:0.25 eAED:0.27 QI:38|0.66|0.5|1|0.33|0.5|4|457|235; (*GB) gi|61651608|dbj|BAD91177.1| (e_value=6e-124) plastidic phosphate translocator-like protein2 [Mesembryanthemum crystallinum];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=8e-118) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=6e-119) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=9e-127) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00015149g0013.1 protein AED:0.20 eAED:0.20 QI:223|0.8|0.83|1|0.6|0.66|6|348|190; (*GB) gi|5932420|gb|AAD56951.1|AF184886_1 (e_value=2e-134) LIM domain protein WLIM2 [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=2e-64) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G55770.5 (e_value=6e-113) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:20703799-20705115 FORWARD LENGTH=199;; (*ITAG) Solyc05g052780.2.1 (e_value=4e-129) genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ go_terms:GO:0005246,GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0005246,GO:0042802 NbS00015149g0007.1 protein AED:0.32 eAED:0.35 QI:0|0.8|0.66|1|0.6|0.5|6|777|158; (*ITAG) Solyc07g015850.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00030325g0113.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|432 NbS00030325g0112.1 protein AED:0.03 eAED:0.03 QI:626|1|0.8|1|0.5|0.4|5|0|344 NbS00030325g0111.1 protein AED:0.08 eAED:0.09 QI:155|0.9|0.90|1|0.7|0.81|11|173|442 NbS00034448g0009.1 protein AED:0.20 eAED:0.20 QI:210|1|1|1|1|1|3|673|122; (*GB) gi|257222628|gb|ACV52592.1| (e_value=4e-79) thioredoxin H-type 1, partial [Nicotiana benthamiana];; (*SWP) sp|P29449|TRXH1_TOBAC (e_value=2e-79) Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G51030.1 (e_value=1e-59) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc04g080850.2.1 (e_value=9e-71) genomic_reference:SL2.40ch04 gene_region:62514114-62516376 transcript_region:SL2.40ch04:62514114..62516376- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- Q201Z4_9SOLN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00060282g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|0.33|0.5|4|0|280; (*GB) gi|357477023|ref|XP_003608797.1| (e_value=2e-137) Sterol-4-methyl-oxidase [Medicago truncatula];; (*SWP) sp|Q8L7W5|SMO11_ARATH (e_value=6e-134) Methylsterol monooxygenase 1-1 OS=Arabidopsis thaliana GN=SMO1-1 PE=1 SV=1;; (*TAIR) AT4G12110.1 (e_value=5e-135) | Symbols: SMO1-1, ATSMO1, ATSMO1-1 | sterol-4alpha-methyl oxidase 1-1 | chr4:7254197-7256004 FORWARD LENGTH=298;; (*ITAG) Solyc01g091320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76721907-76724984 transcript_region:SL2.40ch01:76721907..76724984- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00001411g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.8|1|0.75|0.6|5|0|486; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc06g048860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28322138-28325214 transcript_region:SL2.40ch06:28322138..28325214+ go_terms:GO:0005515,GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0005515,GO:0004322 NbS00001411g0103.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|194|436 NbS00001411g0113.1 protein AED:0.21 eAED:0.26 QI:543|0.5|0.6|1|0.75|0.6|5|559|150 NbS00001411g0109.1 protein AED:0.56 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|183 NbS00029196g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.66|1|1|1|6|0|668; (*GB) gi|359490397|ref|XP_002279420.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera];; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc01g009600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3833422-3837877 transcript_region:SL2.40ch01:3833422..3837877- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00029196g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.5|4|0|176; (*GB) gi|17367234|sp|Q9XH44.1|CET1_TOBAC (e_value=3e-112) RecName: Full=CEN-like protein 1;; (*SWP) sp|Q9XH44|CET1_TOBAC (e_value=1e-113) CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1;; (*TAIR) AT5G03840.1 (e_value=4e-76) | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:1024760-1025796 REVERSE LENGTH=177;; (*ITAG) Solyc01g009580.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3828755-3830538 transcript_region:SL2.40ch01:3828755..3830538+ go_terms:GO:0008429 functional_description:"Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT07_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; GO:0008429 NbS00029497g0006.1 protein AED:0.03 eAED:0.03 QI:102|1|1|1|1|1|2|293|171; (*GB) gi|28565534|gb|AAO43000.1| (e_value=1e-62) early tobacco anther 1 [Nicotiana tabacum];; (*ITAG) Solyc06g007610.2.1 (e_value=2e-45) genomic_reference:SL2.40ch06 gene_region:1605025-1606614 transcript_region:SL2.40ch06:1605025..1606614- go_terms:GO:0003824 functional_description:"Early tobacco anther 1 (AHRD V1 ***- Q84XA0_TOBAC)"; GO:0003824 NbS00020947g0002.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|325; (*GB) gi|147774253|emb|CAN76952.1| (e_value=1e-37) hypothetical protein VITISV_040518 [Vitis vinifera];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=5e-34) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=4e-35) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc02g087570.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44545431-44545802 transcript_region:SL2.40ch02:44545431..44545802- go_terms:GO:0005515 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00033750g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|127 NbC24075231g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0|2|0|67; (*GB) gi|225451471|ref|XP_002270809.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera];; (*TAIR) AT5G14120.1 (e_value=2e-34) | Symbols: | Major facilitator superfamily protein | chr5:4556308-4558447 FORWARD LENGTH=579;; (*ITAG) Solyc02g068140.2.1 (e_value=2e-39) genomic_reference:SL2.40ch02 gene_region:32750441-32754156 transcript_region:SL2.40ch02:32750441..32754156- functional_description:"Nodulin-like protein (AHRD V1 ***- B6U8U8_MAIZE); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00028352g0005.1 protein AED:0.24 eAED:0.24 QI:70|1|1|1|1|1|4|289|254; (*GB) gi|225437314|ref|XP_002263866.1| (e_value=1e-97) PREDICTED: alkylated DNA repair protein alkB homolog 8 [Vitis vinifera];; (*SWP) sp|Q07G10|ALKB8_XENTR (e_value=2e-15) Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2;; (*TAIR) AT4G02485.1 (e_value=8e-82) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:1092695-1094437 FORWARD LENGTH=226;; (*ITAG) Solyc09g074920.2.1 (e_value=5e-142) genomic_reference:SL2.40ch09 gene_region:62212259-62216591 transcript_region:SL2.40ch09:62212259..62216591- functional_description:"Alkylated DNA repair protein alkB homolog 8 (AHRD V1 **-- ALKB8_XENTR)"; NbS00028352g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|242; (*GB) gi|50978430|emb|CAH10765.1| (e_value=2e-77) peripheral-type benzodiazepine receptor [Solanum tuberosum];; (*SWP) sp|O82245|TSPO_ARATH (e_value=3e-40) Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1;; (*TAIR) AT2G47770.1 (e_value=2e-41) | Symbols: ATTSPO, TSPO | TSPO(outer membrane tryptophan-rich sensory protein)-related | chr2:19568701-19569291 FORWARD LENGTH=196;; (*ITAG) Solyc09g074910.1.1 (e_value=1e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62210963-62211559 transcript_region:SL2.40ch09:62210963..62211559+ go_terms:GO:0016021 functional_description:"TspO and MBR like protein (AHRD V1 **-- D2RRW7_HALTV); contains Interpro domain(s) IPR004307 TspO/MBR-related protein "; GO:0016021 NbS00032996g0005.1 protein AED:0.13 eAED:0.13 QI:252|0.71|0.62|1|0.57|0.62|8|0|675; (*GB) gi|359482068|ref|XP_002272910.2| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=2e-149) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G02010.1 (e_value=0.0) | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide exchange factor 7 | chr5:383493-385698 FORWARD LENGTH=546;; (*ITAG) Solyc10g086660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64763651-64766723 transcript_region:SL2.40ch10:64763651..64766723- go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00046325g0004.1 protein AED:0.10 eAED:0.10 QI:121|0.75|0.8|1|0.5|0.8|5|192|355; (*GB) gi|225442009|ref|XP_002271802.1| (e_value=1e-122) PREDICTED: GDSL esterase/lipase 1 [Vitis vinifera];; (*SWP) sp|Q9SSA7|GLIP5_ARATH (e_value=4e-100) GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2;; (*TAIR) AT1G53920.1 (e_value=3e-101) | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137725-20139637 FORWARD LENGTH=385;; (*ITAG) Solyc11g051060.1.1 (e_value=5e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:42315429-42317499 transcript_region:SL2.40ch11:42315429..42317499- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase 2 (AHRD V1 ***- GLIP2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00014075g0007.1 protein AED:0.10 eAED:0.10 QI:373|0|0|1|1|1|2|0|182 NbS00014075g0009.1 protein AED:0.27 eAED:0.27 QI:495|1|0.91|1|0.81|0.75|12|476|664; (*GB) gi|225441541|ref|XP_002280990.1| (e_value=0.0) PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9M2F8|CCR4B_ARATH (e_value=0.0) Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2;; (*TAIR) AT3G58580.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:21660866-21663697 REVERSE LENGTH=603;; (*ITAG) Solyc03g059010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24645518-24656089 transcript_region:SL2.40ch03:24645518..24656089- go_terms:GO:0016787 functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 (AHRD V1 **-- D3TNH5_GLOMM); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0016787 NbS00013918g0023.1 protein AED:0.06 eAED:0.06 QI:1125|1|0.5|1|1|1|2|0|395; (*GB) gi|224117510|ref|XP_002317594.1| (e_value=5e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54930.2 (e_value=5e-24) | Symbols: | AT hook motif-containing protein | chr5:22305897-22306839 REVERSE LENGTH=283;; (*ITAG) Solyc07g064560.2.1 (e_value=7e-149) genomic_reference:SL2.40ch07 gene_region:63868844-63871753 transcript_region:SL2.40ch07:63868844..63871753- go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 *--- Q9FFT7_ARATH); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00013918g0030.1 protein AED:0.08 eAED:0.08 QI:0|0.85|0.75|1|0.71|0.75|8|207|734; (*GB) gi|224126463|ref|XP_002319844.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFT9|RH32_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1;; (*TAIR) AT5G54910.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:22298668-22301719 REVERSE LENGTH=739;; (*ITAG) Solyc07g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63849466-63854084 transcript_region:SL2.40ch07:63849466..63854084- go_terms:GO:0004004 functional_description:"Atp-dependent RNA helicase (AHRD V1 *-** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00013918g0005.1 protein AED:0.10 eAED:0.10 QI:31|0.8|0.83|1|0|0.16|6|1047|191; (*GB) gi|75334880|sp|Q9LEB4.1|RBP45_NICPL (e_value=2e-87) RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protein RBP45; AltName: Full=RNA-binding protein 45; Short=NplRBP45;; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=5e-89) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.1 (e_value=1e-65) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917301 FORWARD LENGTH=306;; (*ITAG) Solyc07g064510.2.1 (e_value=8e-83) genomic_reference:SL2.40ch07 gene_region:63845123-63849000 transcript_region:SL2.40ch07:63845123..63849000- go_terms:GO:0042802 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-* PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00013918g0032.1 protein AED:0.32 eAED:0.32 QI:0|0.6|0.5|1|0.8|0.83|6|0|520; (*GB) gi|22331208|ref|NP_188686.2| (e_value=9e-133) purple acid phosphatase 18 [Arabidopsis thaliana];; (*SWP) sp|Q9LJU7|PPA18_ARATH (e_value=3e-134) Purple acid phosphatase 18 OS=Arabidopsis thaliana GN=PAP18 PE=2 SV=1;; (*TAIR) AT3G20500.1 (e_value=2e-135) | Symbols: ATPAP18, PAP18 | purple acid phosphatase 18 | chr3:7157926-7160244 FORWARD LENGTH=437;; (*ITAG) Solyc07g064500.2.1 (e_value=8e-158) genomic_reference:SL2.40ch07 gene_region:63841264-63844461 transcript_region:SL2.40ch07:63841264..63844461- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00013918g0034.1 protein AED:0.08 eAED:0.16 QI:0|0.5|0.6|1|1|1|5|384|367; (*GB) gi|224124340|ref|XP_002319307.1| (e_value=3e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFU1|CAF2M_ARATH (e_value=2e-132) CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana GN=At5g54890 PE=2 SV=1;; (*TAIR) AT5G54890.1 (e_value=1e-133) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr5:22293346-22294909 FORWARD LENGTH=358;; (*ITAG) Solyc07g064490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63838629-63841297 transcript_region:SL2.40ch07:63838629..63841297+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00013918g0033.1 protein AED:0.19 eAED:0.19 QI:215|0.9|0.90|1|0.7|0.81|11|520|479; (*GB) gi|297737427|emb|CBI26628.3| (e_value=2e-79) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G54920.1 (e_value=1e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22302111-22305576 FORWARD LENGTH=517;; (*ITAG) Solyc07g064550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63859917-63867058 transcript_region:SL2.40ch07:63859917..63867058+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFT8_ARATH)"; NbS00034605g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|6|0|495; (*GB) gi|359481125|ref|XP_002264700.2| (e_value=2e-168) PREDICTED: aluminum-activated malate transporter 8-like [Vitis vinifera];; (*SWP) sp|Q9SRM9|ALMT8_ARATH (e_value=5e-160) Aluminum-activated malate transporter 8 OS=Arabidopsis thaliana GN=ALMT8 PE=3 SV=1;; (*TAIR) AT3G11680.1 (e_value=3e-161) | Symbols: | Aluminium activated malate transporter family protein | chr3:3686995-3689329 REVERSE LENGTH=488;; (*ITAG) Solyc10g081890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62152624-62155998 transcript_region:SL2.40ch10:62152624..62155998+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00004420g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.66|0.75|4|120|385; (*GB) gi|225430690|ref|XP_002265889.1| (e_value=6e-177) PREDICTED: salicylate O-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=3e-87) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT4G36470.1 (e_value=7e-162) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17215128-17216475 REVERSE LENGTH=371;; (*ITAG) Solyc02g084950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42565245-42567726 transcript_region:SL2.40ch02:42565245..42567726+ go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase 4 (AHRD V1 **** B0ZB58_HUMLU); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00004420g0008.1 protein AED:0.18 eAED:0.23 QI:0|0|0|1|0|0|5|0|393; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-43) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=9e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00047837g0005.1 protein AED:0.15 eAED:0.15 QI:98|0.92|0.92|1|0.84|0.84|26|223|1418; (*GB) gi|225430079|ref|XP_002281842.1| (e_value=0.0) PREDICTED: ABC transporter G family member 32-like [Vitis vinifera];; (*SWP) sp|O81016|AB32G_ARATH (e_value=0.0) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT2G26910.1 (e_value=0.0) | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 | chr2:11481623-11487874 FORWARD LENGTH=1420;; (*ITAG) Solyc06g065670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37459893-37468101 transcript_region:SL2.40ch06:37459893..37468101- go_terms:GO:0042626,GO:0015086 functional_description:"ATP-binding cassette transporter (AHRD V1 **** D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626,GO:0015086 NbS00037943g0006.1 protein AED:0.24 eAED:0.24 QI:225|1|1|1|0.75|0.66|9|388|241; (*GB) gi|225435474|ref|XP_002285497.1| (e_value=6e-109) PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L649|BB_ARATH (e_value=1e-62) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT3G63530.2 (e_value=1e-63) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc11g062260.1.1 (e_value=2e-162) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:46239133-46244631 transcript_region:SL2.40ch11:46239133..46244631- go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00004887g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|357446303|ref|XP_003593429.1| (e_value=6e-49) Centrin-1 [Medicago truncatula];; (*SWP) sp|Q9ZPX9|KIC_ARATH (e_value=4e-33) Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2;; (*TAIR) AT4G27280.1 (e_value=3e-35) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc02g079520.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:38633386-38633733 transcript_region:SL2.40ch02:38633386..38633733- go_terms:GO:0031683 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-* D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00004887g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|77 NbS00013155g0012.1 protein AED:0.03 eAED:0.03 QI:57|1|1|1|1|1|2|244|134 NbS00013155g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|0.5|1|1|2|268|111 NbS00014452g0004.1 protein AED:0.14 eAED:0.14 QI:264|1|0.8|1|0.5|0.4|5|0|144; (*GB) gi|302141735|emb|CBI18938.3| (e_value=3e-75) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JJ50|HGS_RAT (e_value=1e-19) Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1;; (*TAIR) AT1G21380.1 (e_value=2e-65) | Symbols: | Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506;; (*ITAG) Solyc04g063280.2.1 (e_value=2e-82) genomic_reference:SL2.40ch04 gene_region:54521549-54535248 transcript_region:SL2.40ch04:54521549..54535248- go_terms:GO:0006886,GO:0005622 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886,GO:0005622 NbS00031141g0001.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|460; (*GB) gi|359488917|ref|XP_002283393.2| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZQA1|PP188_ARATH (e_value=4e-169) Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1;; (*TAIR) AT2G36730.1 (e_value=3e-170) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15405068-15406573 REVERSE LENGTH=501;; (*ITAG) Solyc04g063270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54520061-54521446 transcript_region:SL2.40ch04:54520061..54521446+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ72_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00031141g0005.1 protein AED:0.15 eAED:0.15 QI:45|1|1|1|0.66|0.5|4|2297|291; (*GB) gi|255558490|ref|XP_002520270.1| (e_value=3e-51) protein transporter, putative [Ricinus communis];; (*TAIR) AT1G21380.1 (e_value=6e-30) | Symbols: | Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506;; (*ITAG) Solyc04g063280.2.1 (e_value=1e-108) genomic_reference:SL2.40ch04 gene_region:54521549-54535248 transcript_region:SL2.40ch04:54521549..54535248- go_terms:GO:0006886,GO:0005622 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886,GO:0005622 NbS00030174g0008.1 protein AED:0.20 eAED:0.32 QI:18|0|0|1|0|0.5|2|0|329; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-80) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00030174g0007.1 protein AED:0.36 eAED:0.41 QI:0|0|0|1|0|0.33|3|0|165; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006901g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|4|498|258; (*GB) gi|42491254|dbj|BAD10939.1| (e_value=0.0) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93784|14335_SOLTU (e_value=0.0) 14-3-3-like protein 16R OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=3e-169) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g012120.2.1 (e_value=9e-179) genomic_reference:SL2.40ch04 gene_region:4428571-4430128 transcript_region:SL2.40ch04:4428571..4430128- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00006901g0001.1 protein AED:0.31 eAED:0.36 QI:61|1|0.5|1|0|0.5|2|63|279; (*GB) gi|71370257|gb|AAZ30376.1| (e_value=7e-172) PHB1 [Nicotiana benthamiana];; (*SWP) sp|Q54GI9|PHB1_DICDI (e_value=2e-90) Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1;; (*TAIR) AT5G40770.1 (e_value=7e-147) | Symbols: ATPHB3, PHB3 | prohibitin 3 | chr5:16315589-16316621 REVERSE LENGTH=277;; (*ITAG) Solyc11g010190.1.1 (e_value=6e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3269915-3270754 transcript_region:SL2.40ch11:3269915..3270754+ go_terms:GO:0016020 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00028993g0012.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|0|304; (*GB) gi|350539988|ref|NP_001233834.1| (e_value=3e-146) chloroplast-specific ribosomal protein [Solanum lycopersicum];; (*SWP) sp|P19954|RR30_SPIOL (e_value=5e-100) 30S ribosomal protein 1, chloroplastic OS=Spinacia oleracea GN=RPS30 PE=1 SV=2;; (*TAIR) AT5G24490.1 (e_value=2e-104) | Symbols: | 30S ribosomal protein, putative | chr5:8365690-8367178 FORWARD LENGTH=308;; (*ITAG) Solyc06g073090.2.1 (e_value=5e-149) genomic_reference:SL2.40ch06 gene_region:41417554-41421363 transcript_region:SL2.40ch06:41417554..41421363+ go_terms:GO:0003735,GO:0003824 functional_description:"Ribosomal subunit interface protein (AHRD V1 **-- Q2JIS4_SYNJB); contains Interpro domain(s) IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein "; GO:0003735,GO:0003824 NbS00028993g0014.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.25|1|1|0.5|4|0|229; (*GB) gi|302143997|emb|CBI23102.3| (e_value=2e-93) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24580.3 (e_value=9e-68) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=316;; (*ITAG) Solyc03g080100.2.1 (e_value=2e-88) genomic_reference:SL2.40ch03 gene_region:45553244-45555756 transcript_region:SL2.40ch03:45553244..45555756+ go_terms:GO:0030001 functional_description:"Copper-translocating P-type ATPase (AHRD V1 *--- Q3JHP1_BURP1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00028993g0016.1 protein AED:0.31 eAED:0.31 QI:76|1|0.5|1|1|1|4|0|208; (*GB) gi|359490767|ref|XP_003634163.1| (e_value=1e-70) PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q94JX9|NACA2_ARATH (e_value=1e-62) Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2;; (*TAIR) AT3G49470.1 (e_value=8e-64) | Symbols: NACA2 | nascent polypeptide-associated complex subunit alpha-like protein 2 | chr3:18341072-18342273 FORWARD LENGTH=217;; (*ITAG) Solyc03g080160.2.1 (e_value=5e-76) genomic_reference:SL2.40ch03 gene_region:45598367-45600275 transcript_region:SL2.40ch03:45598367..45600275- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6SU89_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00026407g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.55|0.4|0.9|0.55|0.7|10|0|1281; (*GB) gi|312986081|gb|ADR31353.1| (e_value=0.0) ABA aldehyde oxidase [Solanum lycopersicum];; (*SWP) sp|Q7G191|ALDO4_ARATH (e_value=0.0) Aldehyde oxidase 4 OS=Arabidopsis thaliana GN=AAO4 PE=2 SV=2;; (*TAIR) AT1G04580.1 (e_value=0.0) | Symbols: AAO4, ATAO-4, ATAO2, AO4 | aldehyde oxidase 4 | chr1:1252212-1257510 REVERSE LENGTH=1337;; (*ITAG) Solyc01g009230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3253891-3262099 transcript_region:SL2.40ch01:3253891..3262099+ go_terms:GO:0009055,GO:0051536,GO:0006468,GO:0050660,GO:0055114 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0006468,GO:0050660,GO:0055114 NbS00026407g0008.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|0.5|0.66|3|213|306; (*GB) gi|15209175|gb|AAK91893.1|AC091627_6 (e_value=3e-52) Hsp20/alpha crystallin family protein [Solanum demissum];; (*TAIR) AT2G27140.1 (e_value=8e-15) | Symbols: | HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224;; (*ITAG) Solyc01g009200.2.1 (e_value=1e-47) genomic_reference:SL2.40ch01 gene_region:3240198-3241560 transcript_region:SL2.40ch01:3240198..3241560- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K219_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00053320g0003.1 protein AED:0.15 eAED:0.15 QI:459|0.87|0.55|1|1|0.88|9|0|914; (*GB) gi|359489358|ref|XP_002272264.2| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Vitis vinifera];; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=0.0) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1;; (*TAIR) AT4G00730.1 (e_value=0.0) | Symbols: ANL2, AHDP | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:299741-304103 REVERSE LENGTH=802;; (*ITAG) Solyc03g026070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7855770-7860225 transcript_region:SL2.40ch03:7855770..7860225- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-8 (AHRD V1 *-*- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00019316g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|582; (*GB) gi|225425194|ref|XP_002264953.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259218 [Vitis vinifera];; (*SWP) sp|O54922|EXOC7_RAT (e_value=2e-19) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G13150.1 (e_value=0.0) | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo70 family protein C1 | chr5:4172969-4174930 REVERSE LENGTH=653;; (*ITAG) Solyc05g024340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:31197013-31198791 transcript_region:SL2.40ch05:31197013..31198791+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00019316g0101.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|1|1|4|0|177 NbS00019316g0201.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|132 NbS00025993g0012.1 protein AED:0.29 eAED:0.30 QI:0|0.44|0.1|1|0.33|0.4|10|0|731; (*GB) gi|357933583|dbj|BAL15058.1| (e_value=0.0) glutamate receptor 3.5 [Solanum lycopersicum];; (*SWP) sp|Q84W41|GLR36_ARATH (e_value=0.0) Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1;; (*TAIR) AT3G51480.1 (e_value=0.0) | Symbols: ATGLR3.6, GLR3.6 | glutamate receptor 3.6 | chr3:19101256-19104681 FORWARD LENGTH=903;; (*ITAG) Solyc02g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40759691-40764456 transcript_region:SL2.40ch02:40759691..40764456- go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00025993g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|225438448|ref|XP_002277084.1| (e_value=4e-84) PREDICTED: 60S ribosomal protein L19, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9UTK2|RM19_SCHPO (e_value=1e-30) 54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl19 PE=2 SV=1;; (*TAIR) AT4G35490.1 (e_value=5e-76) | Symbols: MRPL11 | mitochondrial ribosomal protein L11 | chr4:16855918-16856385 FORWARD LENGTH=155;; (*ITAG) Solyc02g082500.1.1 (e_value=2e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40772013-40772480 transcript_region:SL2.40ch02:40772013..40772480+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B4FC48_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "; GO:0003735,GO:0005515 NbS00025993g0008.1 protein AED:0.11 eAED:0.11 QI:559|1|1|1|1|1|4|410|388; (*GB) gi|225438446|ref|XP_002275069.1| (e_value=2e-164) PREDICTED: probable protein phosphatase 2C 47-like [Vitis vinifera];; (*SWP) sp|Q9SD02|P2C47_ARATH (e_value=2e-148) Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1;; (*TAIR) AT3G51470.1 (e_value=2e-149) | Symbols: | Protein phosphatase 2C family protein | chr3:19097924-19099244 REVERSE LENGTH=361;; (*ITAG) Solyc02g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40767940-40771145 transcript_region:SL2.40ch02:40767940..40771145+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00025993g0011.1 protein AED:0.45 eAED:0.53 QI:35|0|0|1|0|0|2|0|148; (*GB) gi|357933583|dbj|BAL15058.1| (e_value=1e-69) glutamate receptor 3.5 [Solanum lycopersicum];; (*SWP) sp|Q9C8E7|GLR33_ARATH (e_value=4e-39) Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1;; (*TAIR) AT1G42540.1 (e_value=3e-40) | Symbols: ATGLR3.3, GLR3.3 | glutamate receptor 3.3 | chr1:15973489-15976703 FORWARD LENGTH=933;; (*ITAG) Solyc02g082480.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:40759691-40764456 transcript_region:SL2.40ch02:40759691..40764456- go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00042898g0004.1 protein AED:0.23 eAED:0.28 QI:0|0.8|0.63|1|0.9|0.90|11|240|352; (*GB) gi|255577147|ref|XP_002529457.1| (e_value=4e-147) 1,4-alpha-glucan branching enzyme, putative [Ricinus communis];; (*SWP) sp|D2WL32|GLGB3_ARATH (e_value=2e-137) 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1;; (*TAIR) AT3G20440.1 (e_value=9e-139) | Symbols: EMB2729, BE1 | Alpha amylase family protein | chr3:7123603-7130364 REVERSE LENGTH=869;; (*ITAG) Solyc07g064830.2.1 (e_value=7e-180) genomic_reference:SL2.40ch07 gene_region:64039012-64053950 transcript_region:SL2.40ch07:64039012..64053950+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** C5FVR4_NANOT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00033552g0009.1 protein AED:0.23 eAED:0.23 QI:3|1|0.85|1|0.5|0.28|7|2088|241; (*GB) gi|225440680|ref|XP_002280008.1| (e_value=4e-119) PREDICTED: uncharacterized protein LOC100261401 isoform 1 [Vitis vinifera];; (*TAIR) AT5G01520.1 (e_value=1e-108) | Symbols: | RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242;; (*ITAG) Solyc10g085130.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63745622-63748169 transcript_region:SL2.40ch10:63745622..63748169- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7M6I2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033552g0010.1 protein AED:0.24 eAED:0.25 QI:168|0.8|0.81|1|0.8|0.81|11|284|534; (*GB) gi|359481678|ref|XP_002278868.2| (e_value=0.0) PREDICTED: GDP-mannose-dependent alpha-mannosyltransferase [Vitis vinifera];; (*SWP) sp|O06423|MGTA_MYCTU (e_value=9e-37) GDP-mannose-dependent alpha-mannosyltransferase OS=Mycobacterium tuberculosis GN=mgtA PE=1 SV=1;; (*TAIR) AT5G01220.1 (e_value=0.0) | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2 | chr5:86907-89885 REVERSE LENGTH=510;; (*ITAG) Solyc10g085100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63731174-63736805 transcript_region:SL2.40ch10:63731174..63736805- go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 **-- B6T479_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00033552g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|1001; (*GB) gi|356566660|ref|XP_003551548.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc10g085120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63741956-63745075 transcript_region:SL2.40ch10:63741956..63745075+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00033552g0007.1 protein AED:0.20 eAED:0.27 QI:0|0.5|0.4|1|1|0.8|5|0|328; (*GB) gi|1685087|gb|AAC49536.1| (e_value=8e-124) diphenol oxidase [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=5e-113) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=4e-114) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g085090.1.1 (e_value=9e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63726967-63730319 transcript_region:SL2.40ch10:63726967..63730319+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00005358g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|6|292|597; (*GB) gi|225466287|ref|XP_002270291.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266835 [Vitis vinifera];; (*TAIR) AT5G32470.1 (e_value=0.0) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc04g050190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44946920-44956676 transcript_region:SL2.40ch04:44946920..44956676+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- D2SGM4_GEOOG); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00005358g0108.1 protein AED:0.00 eAED:0.00 QI:213|1|1|1|1|1|2|399|568 NbS00005358g0102.1 protein AED:0.01 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|402 NbS00005358g0113.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|1|0.33|0|4|149|276 NbS00041449g0002.1 protein AED:0.23 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|314; (*GB) gi|225438331|ref|XP_002273284.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100250855 [Vitis vinifera];; (*TAIR) AT1G21200.1 (e_value=2e-63) | Symbols: | sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443;; (*ITAG) Solyc12g100040.1.1 (e_value=2e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65281062-65282444 transcript_region:SL2.40ch12:65281062..65282444- functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00041449g0001.1 protein AED:0.41 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|225438331|ref|XP_002273284.1| (e_value=4e-29) PREDICTED: uncharacterized protein LOC100250855 [Vitis vinifera];; (*TAIR) AT1G21200.1 (e_value=1e-19) | Symbols: | sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443;; (*ITAG) Solyc12g100040.1.1 (e_value=9e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65281062-65282444 transcript_region:SL2.40ch12:65281062..65282444- functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00000088g0016.1 protein AED:0.03 eAED:0.03 QI:431|0.75|0.6|1|0.75|0.6|5|0|402; (*GB) gi|255544508|ref|XP_002513315.1| (e_value=2e-141) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G20260.1 (e_value=4e-118) | Symbols: | Protein of unknown function (DUF1666) | chr3:7064190-7065751 REVERSE LENGTH=437;; (*ITAG) Solyc06g063340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36419095-36423610 transcript_region:SL2.40ch06:36419095..36423610+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 ***- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00000088g0012.1 protein AED:0.17 eAED:0.17 QI:227|1|1|1|0.5|0.33|3|847|150; (*GB) gi|225443417|ref|XP_002269040.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100246130 [Vitis vinifera];; (*TAIR) AT1G16840.1 (e_value=1e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5763111-5763984 REVERSE LENGTH=161;; (*ITAG) Solyc06g063320.2.1 (e_value=2e-66) genomic_reference:SL2.40ch06 gene_region:36405318-36407593 transcript_region:SL2.40ch06:36405318..36407593+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000088g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|225470664|ref|XP_002268964.1| (e_value=7e-45) PREDICTED: uncharacterized protein LOC100260603 isoform 1 [Vitis vinifera];; (*TAIR) AT4G30010.1 (e_value=7e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14672947-14673219 FORWARD LENGTH=90;; (*ITAG) Solyc06g063310.1.1 (e_value=8e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36402097-36402360 transcript_region:SL2.40ch06:36402097..36402360- functional_description:"Fiber protein Fb15 (Fragment) (AHRD V1 ***- B4UW72_ARAHY)"; NbS00000088g0014.1 protein AED:0.33 eAED:0.33 QI:288|0.94|0.9|1|1|1|20|0|617; (*GB) gi|350537129|ref|NP_001234281.1| (e_value=0.0) vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum];; (*SWP) sp|P09469|VATA_DAUCA (e_value=0.0) V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G78900.2 (e_value=0.0) | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623;; (*ITAG) Solyc12g055800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47132031-47139706 transcript_region:SL2.40ch12:47132031..47139706- go_terms:GO:0046961 functional_description:"V-type ATP synthase alpha chain (AHRD V1 ***- VATA_METTH); contains Interpro domain(s) IPR005725 ATPase, V1 complex, subunit A "; GO:0046961 NbS00049585g0006.1 protein AED:0.28 eAED:0.28 QI:343|0.8|0.66|1|0.2|0.5|6|418|278; (*GB) gi|356540054|ref|XP_003538506.1| (e_value=7e-135) PREDICTED: uncharacterized protein LOC100820355 [Glycine max];; (*TAIR) AT2G22120.2 (e_value=5e-127) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363;; (*ITAG) Solyc04g054330.2.1 (e_value=2e-150) genomic_reference:SL2.40ch04 gene_region:51476048-51484873 transcript_region:SL2.40ch04:51476048..51484873+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00022943g0009.1 protein AED:0.21 eAED:0.22 QI:0|0.66|0.53|0.92|0.75|0.76|13|0|1465; (*GB) gi|255559800|ref|XP_002520919.1| (e_value=8e-146) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G23150.1 (e_value=2e-95) | Symbols: HUA2 | Tudor/PWWP/MBT domain-containing protein | chr5:7786173-7792080 FORWARD LENGTH=1392;; (*ITAG) Solyc02g014130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:6347144-6359434 transcript_region:SL2.40ch02:6347144..6359434- go_terms:GO:0003700 functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--* C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; GO:0003700 NbS00022943g0008.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|0|0.33|3|0|164; (*GB) gi|296087994|emb|CBI35277.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G23130.1 (e_value=3e-29) | Symbols: | Peptidoglycan-binding LysM domain-containing protein | chr5:7781475-7783333 FORWARD LENGTH=397;; (*ITAG) Solyc02g014090.2.1 (e_value=2e-35) genomic_reference:SL2.40ch02 gene_region:6283148-6286134 transcript_region:SL2.40ch02:6283148..6286134+ go_terms:GO:0016998 functional_description:"LysM domain containing protein expressed (AHRD V1 ***- Q7XD97_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00008629g0011.1 protein AED:0.04 eAED:0.08 QI:0|0.4|0.16|0.83|0.6|0.5|6|0|464; (*GB) gi|225457011|ref|XP_002279033.1| (e_value=1e-90) PREDICTED: transcription factor MYB98 [Vitis vinifera];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=4e-70) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT4G18770.1 (e_value=3e-71) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427;; (*ITAG) Solyc06g071520.1.1 (e_value=2e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40426984-40429093 transcript_region:SL2.40ch06:40426984..40429093+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00008629g0012.1 protein AED:0.08 eAED:0.08 QI:568|0.57|0.62|1|0.42|0.37|8|226|330; (*GB) gi|356507258|ref|XP_003522386.1| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100799543 [Glycine max];; (*TAIR) AT5G62960.1 (e_value=1e-62) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc06g071540.2.1 (e_value=8e-105) genomic_reference:SL2.40ch06 gene_region:40435464-40437509 transcript_region:SL2.40ch06:40435464..40437509+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00008629g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|0|0.33|3|0|107; (*GB) gi|359473044|ref|XP_002278803.2| (e_value=1e-56) PREDICTED: 60S ribosomal protein L44-like [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=3e-58) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=8e-57) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=2e-59) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00060046g0007.1 protein AED:0.12 eAED:0.12 QI:223|0.73|0.75|1|0.8|0.87|16|264|485; (*GB) gi|224069760|ref|XP_002326407.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42806|KPYC_SOYBN (e_value=6e-108) Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G52990.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr3:19649046-19652237 FORWARD LENGTH=527;; (*ITAG) Solyc09g008840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2258920-2266051 transcript_region:SL2.40ch09:2258920..2266051- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A9P7U5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00060046g0008.1 protein AED:0.04 eAED:0.14 QI:90|1|0|1|0|0|2|0|359; (*GB) gi|359481956|ref|XP_002277851.2| (e_value=3e-120) PREDICTED: uncharacterized protein LOC100259589 [Vitis vinifera];; (*TAIR) AT3G10040.1 (e_value=9e-62) | Symbols: | sequence-specific DNA binding transcription factors | chr3:3096580-3097875 REVERSE LENGTH=431;; (*ITAG) Solyc09g008830.2.1 (e_value=2e-52) genomic_reference:SL2.40ch09 gene_region:2249828-2257471 transcript_region:SL2.40ch09:2249828..2257471+ functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00012886g0004.1 protein AED:0.26 eAED:0.28 QI:196|0.66|0.8|1|0.44|0.4|10|0|401; (*GB) gi|359495838|ref|XP_002273770.2| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100264206 [Vitis vinifera];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=3e-23) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.1 (e_value=2e-57) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488;; (*ITAG) Solyc09g059310.2.1 (e_value=6e-140) genomic_reference:SL2.40ch09 gene_region:49811218-49819177 transcript_region:SL2.40ch09:49811218..49819177+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00005176g0007.1 protein AED:0.21 eAED:0.22 QI:0|0.66|0.28|0.85|0.5|0.71|7|0|284; (*GB) gi|255587098|ref|XP_002534135.1| (e_value=3e-132) Purple acid phosphatase precursor, putative [Ricinus communis];; (*SWP) sp|O23244|PPA25_ARATH (e_value=8e-123) Purple acid phosphatase 25 OS=Arabidopsis thaliana GN=PAP25 PE=2 SV=2;; (*TAIR) AT4G36350.1 (e_value=6e-124) | Symbols: ATPAP25, PAP25 | purple acid phosphatase 25 | chr4:17173737-17175857 REVERSE LENGTH=466;; (*ITAG) Solyc07g053070.1.1 (e_value=7e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58835446-58837507 transcript_region:SL2.40ch07:58835446..58837507- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** Q9ZS50_IPOBA); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00005176g0009.1 protein AED:0.25 eAED:0.68 QI:0|0|0|0.75|0|0.5|4|0|111 NbS00005176g0008.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.5|0.33|0.5|4|0|213 NbS00013872g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|224130620|ref|XP_002320886.1| (e_value=3e-179) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=4e-23) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT2G46620.1 (e_value=2e-172) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491;; (*ITAG) Solyc01g096230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79079892-79081732 transcript_region:SL2.40ch01:79079892..79081732- go_terms:GO:0005524,GO:0017111 functional_description:"ATPase AAA family protein expressed (AHRD V1 **-- Q8GZX0_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00052524g0005.1 protein AED:0.29 eAED:0.30 QI:0|1|0.66|1|0.5|1|3|614|725; (*GB) gi|225424643|ref|XP_002285504.1| (e_value=8e-84) PREDICTED: uncharacterized protein LOC100242447 [Vitis vinifera];; (*TAIR) AT3G26400.1 (e_value=6e-55) | Symbols: EIF4B1 | eukaryotic translation initiation factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532;; (*ITAG) Solyc05g013700.2.1 (e_value=1e-128) genomic_reference:SL2.40ch05 gene_region:6996862-7004096 transcript_region:SL2.40ch05:6996862..7004096- go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 4B (AHRD V1 **** B6TRD2_MAIZE); contains Interpro domain(s) IPR010433 Plant specific eukaryotic initiation factor 4B "; GO:0003743 NbS00041325g0002.1 protein AED:0.37 eAED:0.37 QI:67|0|0|0.16|1|0.83|6|0|134; (*GB) gi|356545947|ref|XP_003541394.1| (e_value=1e-58) PREDICTED: 125 kDa kinesin-related protein-like [Glycine max];; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-48) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G37420.1 (e_value=1e-54) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=3e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00001486g0013.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0.5|0.33|3|0|409; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=8e-98) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=1e-81) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089690.2.1 (e_value=3e-133) genomic_reference:SL2.40ch02 gene_region:46016378-46019118 transcript_region:SL2.40ch02:46016378..46019118+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00001486g0002.1 protein AED:0.18 eAED:0.18 QI:530|1|0.83|1|0.4|0.5|6|2397|445; (*GB) gi|255550231|ref|XP_002516166.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G21970.1 (e_value=5e-171) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:7262071-7263420 FORWARD LENGTH=449;; (*ITAG) Solyc01g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71010601-71012028 transcript_region:SL2.40ch01:71010601..71012028- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00018171g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.33|1|1|1|3|0|508; (*GB) gi|85068608|gb|ABC69384.1| (e_value=0.0) CYP98A33v1 [Nicotiana tabacum];; (*SWP) sp|O22203|C98A3_ARATH (e_value=0.0) Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1;; (*TAIR) AT2G40890.1 (e_value=0.0) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc10g078240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59412300-59414857 transcript_region:SL2.40ch10:59412300..59414857- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004461g0005.1 protein AED:0.25 eAED:0.26 QI:0|1|0.75|1|1|1|4|0|232; (*GB) gi|225451954|ref|XP_002283161.1| (e_value=3e-117) PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Vitis vinifera];; (*SWP) sp|Q9SWS1|ACFR2_ARATH (e_value=1e-108) Probable transmembrane ascorbate ferrireductase 2 OS=Arabidopsis thaliana GN=CYB561B PE=2 SV=1;; (*TAIR) AT5G38630.1 (e_value=1e-109) | Symbols: ACYB-1, CYB-1 | cytochrome B561-1 | chr5:15466141-15467511 FORWARD LENGTH=230;; (*ITAG) Solyc02g065580.2.1 (e_value=1e-133) genomic_reference:SL2.40ch02 gene_region:31319010-31323703 transcript_region:SL2.40ch02:31319010..31323703- go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX4_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00004461g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.90|0.83|1|0.81|0.91|12|314|427; (*GB) gi|225451387|ref|XP_002264962.1| (e_value=0.0) PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME [Vitis vinifera];; (*SWP) sp|Q1PET6|ICML2_ARATH (e_value=0.0) Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 OS=Arabidopsis thaliana GN=ICMEL2 PE=2 SV=1;; (*TAIR) AT3G02410.1 (e_value=0.0) | Symbols: ICME-LIKE2 | alpha/beta-Hydrolases superfamily protein | chr3:492118-494877 REVERSE LENGTH=422;; (*ITAG) Solyc05g010050.2.1 (e_value=3e-180) genomic_reference:SL2.40ch05 gene_region:4244724-4252159 transcript_region:SL2.40ch05:4244724..4252159- go_terms:GO:0010296 functional_description:"Alpha/beta hydrolase fold-3 (AHRD V1 *--- Q1BFL1_MYCSS); contains Interpro domain(s) IPR002018 Carboxylesterase, type B "; GO:0010296 NbS00021201g0006.1 protein AED:0.01 eAED:0.01 QI:97|1|0.66|1|0|0|3|0|174; (*GB) gi|225434082|ref|XP_002275720.1| (e_value=5e-22) PREDICTED: uncharacterized protein LOC100264463 [Vitis vinifera];; (*ITAG) Solyc04g054460.2.1 (e_value=6e-48) genomic_reference:SL2.40ch04 gene_region:51700624-51707012 transcript_region:SL2.40ch04:51700624..51707012- functional_description:"Glycine-rich protein (AHRD V1 ***- D7LWF3_ARALY)"; NbS00013405g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|138; (*GB) gi|255578546|ref|XP_002530136.1| (e_value=2e-22) 60S ribosomal protein L18a, plant, putative [Ricinus communis];; (*SWP) sp|Q8L9S1|R18A1_ARATH (e_value=2e-14) 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2;; (*TAIR) AT1G53560.1 (e_value=1e-20) | Symbols: | Ribosomal protein L18ae family | chr1:19984908-19985960 REVERSE LENGTH=153;; (*ITAG) Solyc12g011440.1.1 (e_value=3e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:4258481-4261206 transcript_region:SL2.40ch12:4258481..4261206+ functional_description:"60S ribosomal protein L18A (AHRD V1 *-*- B6T286_MAIZE)"; NbS00007191g0012.1 protein AED:0.22 eAED:0.22 QI:182|0.5|0.4|0.8|0.5|0.8|5|0|214; (*GB) gi|356517028|ref|XP_003527192.1| (e_value=1e-45) PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like isoform 1 [Glycine max];; (*SWP) sp|O22773|TL16_ARATH (e_value=4e-40) Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3;; (*TAIR) AT4G02530.1 (e_value=3e-41) | Symbols: | chloroplast thylakoid lumen protein | chr4:1112335-1114005 REVERSE LENGTH=216;; (*ITAG) Solyc12g009600.1.1 (e_value=8e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2860613-2862594 transcript_region:SL2.40ch12:2860613..2862594- functional_description:"Thylakoid lumenal protein (AHRD V1 ***- B6SU36_MAIZE)"; NbS00007191g0010.1 protein AED:0.35 eAED:0.38 QI:140|0.33|0.5|1|0|0|4|0|326; (*GB) gi|225445563|ref|XP_002285323.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100259445 [Vitis vinifera];; (*SWP) sp|Q9LW00|MBD11_ARATH (e_value=2e-27) Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1;; (*TAIR) AT3G15790.1 (e_value=2e-28) | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain 11 | chr3:5343209-5344386 FORWARD LENGTH=254;; (*ITAG) Solyc12g009590.1.1 (e_value=1e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2852172-2859869 transcript_region:SL2.40ch12:2852172..2859869+ go_terms:GO:0005634,GO:0003677,GO:0020037 functional_description:"Methyl binding domain protein (Fragment) (AHRD V1 *--- B9HAA5_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677,GO:0020037 NbS00007191g0005.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|528 NbS00021405g0014.1 protein AED:0.15 eAED:0.18 QI:0|0.5|0|1|0.5|0.33|3|0|1491; (*GB) gi|359480986|ref|XP_002266794.2| (e_value=3e-83) PREDICTED: uncharacterized protein LOC100248405 [Vitis vinifera];; (*TAIR) AT5G17910.2 (e_value=2e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). | chr5:5927906-5932292 FORWARD LENGTH=1342;; (*ITAG) Solyc10g081200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61646960-61653636 transcript_region:SL2.40ch10:61646960..61653636- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)"; NbS00021405g0005.1 protein AED:0.41 eAED:1.00 QI:0|0|0|1|1|1|2|0|382; (*ITAG) Solyc10g081200.1.1 (e_value=9e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61646960-61653636 transcript_region:SL2.40ch10:61646960..61653636- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)"; NbS00021405g0016.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.42|0.85|0.33|0.57|7|0|244; (*GB) gi|1619300|emb|CAA64565.1| (e_value=1e-95) LRR protein [Solanum lycopersicum];; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=4e-55) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT5G21090.1 (e_value=5e-87) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7164758-7166904 FORWARD LENGTH=218;; (*ITAG) Solyc10g081190.1.1 (e_value=3e-98) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61639261-61643658 transcript_region:SL2.40ch10:61639261..61643658+ go_terms:GO:0004675 functional_description:"Lrr, resistance protein fragment"; GO:0004675 NbS00041704g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.71|1|1|0.85|7|168|720; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=0.0) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|Q38890|GUN25_ARATH (e_value=0.0) Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1;; (*TAIR) AT5G49720.1 (e_value=0.0) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc05g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:81292-84268 transcript_region:SL2.40ch05:81292..84268+ go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00004652g0009.1 protein AED:0.00 eAED:0.00 QI:179|1|1|1|0|0|2|205|256 NbS00004652g0003.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|112 NbS00004652g0101.1 protein AED:0.09 eAED:0.10 QI:612|0.85|0.87|1|0.42|0.75|8|444|244 NbS00004652g0106.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|89 NbS00004652g0124.1 protein AED:0.39 eAED:0.39 QI:0|0.85|0.75|1|0.57|0.75|8|0|239 NbS00004652g0116.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|202 NbS00023492g0004.1 protein AED:0.03 eAED:0.06 QI:0|0|0|1|1|1|3|0|332; (*GB) gi|21389174|gb|AAM50521.1|AF510215_1 (e_value=3e-127) nam-like protein 18 [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=3e-83) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=2e-84) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc03g115850.2.1 (e_value=6e-127) genomic_reference:SL2.40ch03 gene_region:59503502-59505060 transcript_region:SL2.40ch03:59503502..59505060- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00008626g0001.1 protein AED:0.49 eAED:0.49 QI:0|0.5|0|0.66|1|1|3|0|72; (*GB) gi|357511057|ref|XP_003625817.1| (e_value=1e-36) Ubiquinol-cytochrome c reductase complex protein [Medicago truncatula];; (*SWP) sp|P46270|QCR9_SOLTU (e_value=6e-38) Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G52730.1 (e_value=3e-38) | Symbols: | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | chr3:19543146-19544167 REVERSE LENGTH=72;; (*ITAG) Solyc11g068400.1.1 (e_value=4e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50223989-50227276 transcript_region:SL2.40ch11:50223989..50227276- go_terms:GO:0005740 functional_description:"Ubiquinol-cytochrome C reductase (AHRD V1 ***- D6BQN0_9ROSI); contains Interpro domain(s) IPR008027 Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like "; GO:0005740 NbS00030489g0003.1 protein AED:0.22 eAED:0.23 QI:57|1|0.75|1|1|1|4|575|230; (*GB) gi|255584289|ref|XP_002532881.1| (e_value=8e-110) DAG protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-40) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT2G33430.1 (e_value=1e-106) | Symbols: DAL1, DAL | differentiation and greening-like 1 | chr2:14162732-14164729 FORWARD LENGTH=219;; (*ITAG) Solyc06g008220.2.1 (e_value=2e-121) genomic_reference:SL2.40ch06 gene_region:2097959-2101060 transcript_region:SL2.40ch06:2097959..2101060+ functional_description:"DAG protein (AHRD V1 **-- B6TEQ2_MAIZE)"; NbS00029438g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.33|1|1|3|0|340; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-40) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g016610.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7903101-7906221 transcript_region:SL2.40ch08:7903101..7906221- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00029438g0007.1 protein AED:0.33 eAED:0.33 QI:81|1|1|1|1|1|9|359|350; (*GB) gi|13310811|gb|AAK18619.1|AF352797_1 (e_value=0.0) ankyrin-repeat protein HBP1 [Nicotiana tabacum];; (*SWP) sp|Q9SAR5|AKR2_ARATH (e_value=2e-142) Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2;; (*TAIR) AT2G17390.1 (e_value=5e-144) | Symbols: AKR2B | ankyrin repeat-containing 2B | chr2:7555870-7557743 FORWARD LENGTH=344;; (*ITAG) Solyc01g104170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84393496-84398307 transcript_region:SL2.40ch01:84393496..84398307- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 ***- B6TNC0_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00029438g0010.1 protein AED:0.32 eAED:0.36 QI:0|0.33|0|1|1|0.75|4|0|213; (*ITAG) Solyc01g104160.2.1 (e_value=5e-25) genomic_reference:SL2.40ch01 gene_region:84387581-84392892 transcript_region:SL2.40ch01:84387581..84392892- functional_description:"Uncharacterised protein At1g10890 (AHRD V1 *--- Y1089_ARATH)"; NbS00002436g0005.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|308; (*GB) gi|225460775|ref|XP_002276368.1| (e_value=3e-159) PREDICTED: probable serine/threonine-protein kinase WNK11 [Vitis vinifera];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=2e-151) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=1e-152) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc07g065250.2.1 (e_value=1e-178) genomic_reference:SL2.40ch07 gene_region:64310077-64312539 transcript_region:SL2.40ch07:64310077..64312539- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017777g0001.1 protein AED:0.01 eAED:0.01 QI:127|0.66|0.85|1|0.83|0.71|7|468|680; (*GB) gi|359489997|ref|XP_002274897.2| (e_value=8e-25) PREDICTED: uncharacterized protein LOC100259588 [Vitis vinifera];; (*TAIR) AT5G17160.1 (e_value=4e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast hits to 10381 proteins in 896 species: Archae - 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants - 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI BLink). | chr5:5639843-5642427 REVERSE LENGTH=569;; (*ITAG) Solyc06g072810.2.1 (e_value=4e-83) genomic_reference:SL2.40ch06 gene_region:41291876-41295402 transcript_region:SL2.40ch06:41291876..41295402- functional_description:"Unknown Protein (AHRD V1)"; NbS00017777g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|0|0.5|2|351|291; (*GB) gi|296245406|gb|ADH03021.1| (e_value=1e-148) acyl-ACP thioesterase [Capsicum annuum];; (*SWP) sp|Q42712|FATA_CORSA (e_value=9e-142) Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1;; (*TAIR) AT3G25110.1 (e_value=7e-143) | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesterase | chr3:9146589-9148273 REVERSE LENGTH=362;; (*ITAG) Solyc06g083380.2.1 (e_value=8e-158) genomic_reference:SL2.40ch06 gene_region:45086448-45091016 transcript_region:SL2.40ch06:45086448..45091016+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** D7RU32_CAPAN); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00044893g0001.1 protein AED:0.33 eAED:0.37 QI:0|0.5|0.53|0.84|1|1|13|0|522; (*GB) gi|225441953|ref|XP_002263152.1| (e_value=6e-71) PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q6R2J8|SRF8_ARATH (e_value=6e-57) Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1;; (*TAIR) AT4G22130.2 (e_value=4e-59) | Symbols: SRF8 | STRUBBELIG-receptor family 8 | chr4:11724781-11727331 FORWARD LENGTH=562;; (*ITAG) Solyc12g055720.1.1 (e_value=3e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47042875-47052360 transcript_region:SL2.40ch12:47042875..47052360- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00044893g0007.1 protein AED:0.23 eAED:0.30 QI:131|0.5|0.76|1|1|1|13|310|549; (*GB) gi|356520182|ref|XP_003528743.1| (e_value=0.0) PREDICTED: 26S protease regulatory subunit 7-like [Glycine max];; (*SWP) sp|O64982|PRS7_PRUPE (e_value=0.0) 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=0.0) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00044893g0011.1 protein AED:0.38 eAED:0.38 QI:488|0.87|1|1|0.5|0.33|9|89|165; (*GB) gi|15220931|ref|NP_175779.1| (e_value=2e-61) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G53760.1 (e_value=3e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:20069159-20070918 REVERSE LENGTH=272;; (*ITAG) Solyc06g063130.2.1 (e_value=2e-83) genomic_reference:SL2.40ch06 gene_region:36265373-36270935 transcript_region:SL2.40ch06:36265373..36270935+ functional_description:"Conserved protein (Fungal and plant) (AHRD V1 *--- D4AZ45_ARTBC); contains Interpro domain(s) IPR018786 Protein of unknown function DUF2343 "; NbS00035701g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225455840|ref|XP_002273330.1| (e_value=5e-24) PREDICTED: uncharacterized protein LOC100261105 [Vitis vinifera];; (*TAIR) AT1G49000.1 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18123559-18124029 REVERSE LENGTH=156;; (*ITAG) Solyc06g069250.1.1 (e_value=1e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39419191-39419670 transcript_region:SL2.40ch06:39419191..39419670+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004077g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|862; (*GB) gi|27728147|gb|AAN15318.1| (e_value=0.0) isoamylase isoform 2 [Solanum tuberosum];; (*SWP) sp|Q8L735|ISOA2_ARATH (e_value=0.0) Isoamylase 2, chloroplastic OS=Arabidopsis thaliana GN=ISA2 PE=1 SV=2;; (*TAIR) AT1G03310.1 (e_value=0.0) | Symbols: ATISA2, ISA2, DBE1, BE2 | debranching enzyme 1 | chr1:813975-816623 FORWARD LENGTH=882;; (*ITAG) Solyc09g064800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57806545-57809145 transcript_region:SL2.40ch09:57806545..57809145- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00004077g0016.1 protein AED:0.15 eAED:0.15 QI:172|1|0.91|1|0.72|0.83|12|0|1327; (*GB) gi|296086711|emb|CBI32346.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23590.1 (e_value=0.0) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc09g064780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57766534-57778114 transcript_region:SL2.40ch09:57766534..57778114+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00004077g0015.1 protein AED:0.43 eAED:0.43 QI:33|0.5|0.33|1|1|1|3|533|106; (*GB) gi|359479800|ref|XP_002271766.2| (e_value=1e-42) PREDICTED: uncharacterized protein LOC100249345 [Vitis vinifera];; (*TAIR) AT2G48120.2 (e_value=9e-34) | Symbols: PAC | pale cress protein (PAC) | chr2:19679870-19681351 FORWARD LENGTH=307;; (*ITAG) Solyc09g064790.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:57800521-57806263 transcript_region:SL2.40ch09:57800521..57806263+ functional_description:"PAC (Fragment) (AHRD V1 **-- Q7DLY1_ARATH)"; NbS00053660g0107.1 protein AED:0.26 eAED:0.26 QI:439|0.83|0.71|1|0.66|0.42|7|0|465 NbS00004192g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.33|1|1|3|0|282; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT2G17070.1 (e_value=3e-29) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7430863-7431654 REVERSE LENGTH=263;; (*ITAG) Solyc02g083050.1.1 (e_value=6e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41193246-41194061 transcript_region:SL2.40ch02:41193246..41194061+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00004192g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|3|0|154 NbS00018169g0009.1 protein AED:0.22 eAED:0.22 QI:0|1|0.85|1|1|1|7|574|386; (*GB) gi|148469859|gb|ABQ65859.1| (e_value=0.0) serine carboxypeptidase III [Nicotiana tabacum];; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=0.0) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2;; (*TAIR) AT3G45010.1 (e_value=0.0) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc11g066250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49045907-49049862 transcript_region:SL2.40ch11:49045907..49049862- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q9XH61_9ASTR); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00018169g0011.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|116; (*GB) gi|148469861|gb|ABQ65860.1| (e_value=5e-51) serine carboxypeptidase III [Nicotiana tabacum];; (*ITAG) Solyc11g066250.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49045907-49049862 transcript_region:SL2.40ch11:49045907..49049862- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q9XH61_9ASTR); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00018169g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|267|222; (*GB) gi|255565431|ref|XP_002523706.1| (e_value=4e-66) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G28105.1 (e_value=2e-44) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11976764-11977713 FORWARD LENGTH=166;; (*ITAG) Solyc11g066240.1.1 (e_value=1e-94) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49042187-49044698 transcript_region:SL2.40ch11:49042187..49044698+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like "; NbC23929911g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|71370257|gb|AAZ30376.1| (e_value=1e-31) PHB1 [Nicotiana benthamiana];; (*TAIR) AT3G27280.1 (e_value=4e-31) | Symbols: ATPHB4, PHB4 | prohibitin 4 | chr3:10076904-10078051 FORWARD LENGTH=279;; (*ITAG) Solyc05g051510.2.1 (e_value=3e-34) genomic_reference:SL2.40ch05 gene_region:61017078-61019992 transcript_region:SL2.40ch05:61017078..61019992- go_terms:GO:0005515 functional_description:"Prohibitin (AHRD V1 ***- O04361_TOBAC); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0005515 NbS00004640g0016.1 protein AED:0.15 eAED:0.23 QI:42|0.62|0.44|1|0.62|0.66|9|0|465; (*GB) gi|255586601|ref|XP_002533934.1| (e_value=0.0) phosphoprotein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9Z2D1|MTMR2_MOUSE (e_value=3e-41) Myotubularin-related protein 2 OS=Mus musculus GN=Mtmr2 PE=1 SV=3;; (*TAIR) AT3G10550.1 (e_value=4e-167) | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases II superfamily | chr3:3293210-3298452 REVERSE LENGTH=840;; (*ITAG) Solyc11g007670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00004640g0017.1 protein AED:0.36 eAED:0.36 QI:160|0.78|0.8|1|0.85|0.93|15|0|454; (*GB) gi|115487322|ref|NP_001066148.1| (e_value=0.0) Os12g0145700 [Oryza sativa Japonica Group];; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=7e-100) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G52990.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr3:19649046-19652237 FORWARD LENGTH=527;; (*ITAG) Solyc10g083720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62811178-62816713 transcript_region:SL2.40ch10:62811178..62816713+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- Q94KE3_ARATH); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00004640g0019.1 protein AED:0.24 eAED:0.24 QI:143|1|1|1|0.63|0.66|12|433|333; (*GB) gi|225449657|ref|XP_002263006.1| (e_value=1e-175) PREDICTED: mRNA cap guanine-N7 methyltransferase 2-like [Vitis vinifera];; (*SWP) sp|Q5HZ60|MCES2_ARATH (e_value=4e-154) mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1;; (*TAIR) AT3G52210.1 (e_value=3e-155) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:19367035-19369293 FORWARD LENGTH=354;; (*ITAG) Solyc11g007700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1935876-1941661 transcript_region:SL2.40ch11:1935876..1941661- go_terms:GO:0006370 functional_description:"mRNA cap guanine-N7 methyltransferase (AHRD V1 ***- B4LRY5_DROVI); contains Interpro domain(s) IPR004971 mRNA capping enzyme, large subunit "; GO:0006370 NbS00004640g0018.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0|1|1|1|3|0|163; (*GB) gi|515932|emb|CAA56654.1| (e_value=3e-17) E24 ASN [Spinacia oleracea];; (*TAIR) AT3G52230.1 (e_value=1e-11) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19371325-19372397 FORWARD LENGTH=145;; (*ITAG) Solyc11g007680.1.1 (e_value=3e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1911885-1914794 transcript_region:SL2.40ch11:1911885..1914794- functional_description:"Chloroplast outer envelope protein (Omp24) (AHRD V1 *-*- Q41375_SPIOL)"; NbS00004640g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|255581461|ref|XP_002531538.1| (e_value=5e-58) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5UNY4|YL728_MIMIV (e_value=4e-19) Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1;; (*TAIR) AT5G43390.1 (e_value=6e-57) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:17422940-17424871 REVERSE LENGTH=643;; (*ITAG) Solyc09g089940.1.1 (e_value=9e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00004640g0006.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|118; (*ITAG) Solyc06g065730.2.1 (e_value=3e-14) genomic_reference:SL2.40ch06 gene_region:37557813-37598461 transcript_region:SL2.40ch06:37557813..37598461+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00007402g0001.1 protein AED:0.30 eAED:0.28 QI:0|0.66|0.57|0.85|1|1|7|661|416; (*GB) gi|359482716|ref|XP_002263827.2| (e_value=9e-98) PREDICTED: uncharacterized protein LOC100263001 [Vitis vinifera];; (*TAIR) AT5G42670.1 (e_value=4e-48) | Symbols: | Agenet domain-containing protein | chr5:17108262-17110235 FORWARD LENGTH=294;; (*ITAG) Solyc03g005440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:326486-334139 transcript_region:SL2.40ch03:326486..334139+ go_terms:GO:0032259,GO:0003723 functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *--- Q9FMZ7_ARATH); contains Interpro domain(s) IPR008395 Agenet "; GO:0032259,GO:0003723 NbS00041961g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|102; (*ITAG) Solyc11g018570.1.1 (e_value=6e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:8739998-8740713 transcript_region:SL2.40ch11:8739998..8740713- functional_description:"Unknown Protein (AHRD V1)"; NbS00041961g0006.1 protein AED:0.15 eAED:0.15 QI:154|1|0.5|1|1|1|2|0|180; (*GB) gi|145687759|gb|ABP88855.1| (e_value=3e-110) ribosomal protein L25 [Nicotiana benthamiana];; (*SWP) sp|B2IG64|RL25_BEII9 (e_value=2e-15) 50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplY PE=3 SV=1;; (*TAIR) AT4G23620.1 (e_value=3e-71) | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr4:12315016-12316659 REVERSE LENGTH=264;; (*ITAG) Solyc11g018560.1.1 (e_value=1e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8721428-8726834 transcript_region:SL2.40ch11:8721428..8726834+ go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L25 (AHRD V1 ***- D2LIE4_RHOVA); contains Interpro domain(s) IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "; GO:0005840,GO:0006412 NbS00011434g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|575; (*GB) gi|255549456|ref|XP_002515781.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g014300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:6927685-6929515 transcript_region:SL2.40ch02:6927685..6929515+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbC25517220g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|147800509|emb|CAN70846.1| (e_value=7e-43) hypothetical protein VITISV_006661 [Vitis vinifera];; (*SWP) sp|Q9ZVX4|U90A1_ARATH (e_value=3e-33) UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1 PE=2 SV=1;; (*TAIR) AT2G16890.1 (e_value=2e-35) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:7316938-7317876 FORWARD LENGTH=312;; (*ITAG) Solyc03g114180.2.1 (e_value=2e-59) genomic_reference:SL2.40ch03 gene_region:58239856-58242968 transcript_region:SL2.40ch03:58239856..58242968- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00011806g0002.1 protein AED:0.27 eAED:0.29 QI:0|0|0.2|1|1|1|5|411|249; (*GB) gi|133711805|gb|ABO36623.1| (e_value=1e-96) putative RNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q6Z358|C3H49_ORYSJ (e_value=4e-69) Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1;; (*TAIR) AT1G07360.1 (e_value=7e-61) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481;; (*ITAG) Solyc10g079190.1.1 (e_value=2e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60106005-60110030 transcript_region:SL2.40ch10:60106005..60110030- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Pre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00017121g0003.1 protein AED:0.28 eAED:0.28 QI:148|1|1|1|0.75|0.6|5|190|266; (*GB) gi|225451491|ref|XP_002271350.1| (e_value=9e-149) PREDICTED: 7-alpha-hydroxysteroid dehydrogenase [Vitis vinifera];; (*SWP) sp|Q9LBG2|LVR_LEIAQ (e_value=8e-19) Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1;; (*TAIR) AT3G01980.4 (e_value=9e-121) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:327747-328833 REVERSE LENGTH=266;; (*ITAG) Solyc07g047800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56334686-56340215 transcript_region:SL2.40ch07:56334686..56340215- go_terms:GO:0043621 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7L9J1_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621 NbS00013087g0006.1 protein AED:0.00 eAED:0.00 QI:98|1|0.5|1|1|1|2|0|215; (*GB) gi|255563723|ref|XP_002522863.1| (e_value=1e-52) Early nodulin 55-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=2e-33) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT3G20570.1 (e_value=9e-46) | Symbols: ENODL9, AtENODL9 | early nodulin-like protein 9 | chr3:7186754-7187453 REVERSE LENGTH=203;; (*ITAG) Solyc07g064240.2.1 (e_value=2e-96) genomic_reference:SL2.40ch07 gene_region:63687022-63688523 transcript_region:SL2.40ch07:63687022..63688523+ go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR14_SOLPE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00013087g0009.1 protein AED:0.40 eAED:0.41 QI:0|0.92|0.86|1|0.78|0.8|15|0|455; (*GB) gi|225461068|ref|XP_002281649.1| (e_value=0.0) PREDICTED: protein disulfide isomerase-like 5-4 [Vitis vinifera];; (*SWP) sp|Q9LJU2|PDI53_ARATH (e_value=0.0) Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1;; (*TAIR) AT3G20560.1 (e_value=0.0) | Symbols: ATPDIL5-3, PDI12, ATPDI12, PDIL5-3 | PDI-like 5-3 | chr3:7182182-7186390 FORWARD LENGTH=483;; (*ITAG) Solyc07g064250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63690097-63697795 transcript_region:SL2.40ch07:63690097..63697795- go_terms:GO:0003756,GO:0042802 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q5EUD1_MAIZE); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0003756,GO:0042802 NbC25587831g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|0|1|0|83; (*GB) gi|350537109|ref|NP_001234536.1| (e_value=9e-42) alpha/beta fold family protein [Solanum lycopersicum];; (*TAIR) AT2G18360.1 (e_value=1e-32) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:7976848-7979221 REVERSE LENGTH=313;; (*ITAG) Solyc02g085180.2.1 (e_value=3e-44) genomic_reference:SL2.40ch02 gene_region:42736730-42739537 transcript_region:SL2.40ch02:42736730..42739537- go_terms:GO:0003824 functional_description:"Catalytic/ hydrolase (AHRD V1 **** B6TJ32_MAIZE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00007748g0002.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0.2|1|1|1|5|0|392; (*GB) gi|118485763|gb|ABK94731.1| (e_value=1e-54) unknown [Populus trichocarpa];; (*TAIR) AT4G17980.1 (e_value=3e-12) | Symbols: anac071, NAC071 | NAC domain containing protein 71 | chr4:9978850-9980038 REVERSE LENGTH=262;; (*ITAG) Solyc04g079940.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:61853024-61857677 transcript_region:SL2.40ch04:61853024..61857677- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MVE5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00007748g0008.1 protein AED:0.13 eAED:0.13 QI:173|0.66|0.85|1|0.66|0.57|7|1325|338; (*GB) gi|255538560|ref|XP_002510345.1| (e_value=3e-104) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8LFA9|METL2_ARATH (e_value=4e-82) Methyltransferase-like protein 2 OS=Arabidopsis thaliana GN=At1g19340 PE=2 SV=2;; (*TAIR) AT1G19340.1 (e_value=3e-83) | Symbols: | Methyltransferase MT-A70 family protein | chr1:6684798-6686798 FORWARD LENGTH=414;; (*ITAG) Solyc04g079950.2.1 (e_value=3e-92) genomic_reference:SL2.40ch04 gene_region:61862713-61866231 transcript_region:SL2.40ch04:61862713..61866231+ go_terms:GO:0032259,GO:0006139 functional_description:"MT-A70 family (AHRD V1 *-*- C9S7M7_VERA1); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0032259,GO:0006139 NbS00007748g0109.1 protein AED:0.17 eAED:0.17 QI:250|1|0.83|1|0.6|0.66|6|301|240 NbS00007748g0108.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|0|0|4|0|257 NbS00008439g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|225441325|ref|XP_002276334.1| (e_value=4e-69) PREDICTED: probable calcium-binding protein CML35 [Vitis vinifera];; (*SWP) sp|Q9SS31|CML36_ARATH (e_value=8e-50) Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1;; (*TAIR) AT3G10190.1 (e_value=6e-51) | Symbols: | Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209;; (*ITAG) Solyc10g079420.1.1 (e_value=3e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60282482-60283099 transcript_region:SL2.40ch10:60282482..60283099+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6TKX0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00013522g0001.1 protein AED:0.17 eAED:0.17 QI:63|1|1|1|0|0.5|2|251|122; (*GB) gi|255579320|ref|XP_002530505.1| (e_value=3e-47) Protein trm112, putative [Ricinus communis];; (*SWP) sp|Q8LFJ5|T112A_ARATH (e_value=3e-42) TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1;; (*TAIR) AT1G22270.1 (e_value=2e-43) | Symbols: | Trm112p-like protein | chr1:7865548-7865922 FORWARD LENGTH=124;; (*ITAG) Solyc04g074150.1.1 (e_value=4e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57741096-57741443 transcript_region:SL2.40ch04:57741096..57741443- go_terms:GO:0008276 functional_description:"Methyltransferase-associated protein (AHRD V1 **** C1FDA9_9CHLO); contains Interpro domain(s) IPR005651 Protein of unknown function DUF343 "; GO:0008276 NbS00013522g0004.1 protein AED:0.26 eAED:0.28 QI:272|0.66|0.85|1|1|1|7|0|404; (*GB) gi|302141957|emb|CBI19160.3| (e_value=8e-175) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G34630.1 (e_value=5e-158) | Symbols: | BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr1:12685317-12687435 FORWARD LENGTH=481;; (*ITAG) Solyc04g074140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57734849-57740521 transcript_region:SL2.40ch04:57734849..57740521+ functional_description:"Os03g0190900 protein (Fragment) (AHRD V1 *--- Q0DUE5_ORYSJ)"; NbS00013522g0005.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|1|1|2|0|110; (*GB) gi|302141957|emb|CBI19160.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G34630.1 (e_value=7e-40) | Symbols: | BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has 323 Blast hits to 315 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr1:12685317-12687435 FORWARD LENGTH=481;; (*ITAG) Solyc04g074140.2.1 (e_value=7e-56) genomic_reference:SL2.40ch04 gene_region:57734849-57740521 transcript_region:SL2.40ch04:57734849..57740521+ functional_description:"Os03g0190900 protein (Fragment) (AHRD V1 *--- Q0DUE5_ORYSJ)"; NbS00013522g0009.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.66|1|1|3|0|88 NbS00013522g0003.1 protein AED:0.86 eAED:0.93 QI:0|0|0|0.66|1|1|3|0|181; (*GB) gi|359492853|ref|XP_002284152.2| (e_value=5e-89) PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Vitis vinifera];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=2e-18) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT5G64970.1 (e_value=3e-85) | Symbols: | Mitochondrial substrate carrier family protein | chr5:25958806-25960443 REVERSE LENGTH=428;; (*ITAG) Solyc04g074130.2.1 (e_value=7e-97) genomic_reference:SL2.40ch04 gene_region:57726028-57733813 transcript_region:SL2.40ch04:57726028..57733813+ go_terms:GO:0030233 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10QM8_ORYSJ); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00011111g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|4|0|278; (*GB) gi|34978964|gb|AAQ83691.1| (e_value=1e-162) C-4 sterol methyl oxidase 1 [Nicotiana benthamiana];; (*SWP) sp|Q8L7W5|SMO11_ARATH (e_value=4e-146) Methylsterol monooxygenase 1-1 OS=Arabidopsis thaliana GN=SMO1-1 PE=1 SV=1;; (*TAIR) AT4G12110.1 (e_value=3e-147) | Symbols: SMO1-1, ATSMO1, ATSMO1-1 | sterol-4alpha-methyl oxidase 1-1 | chr4:7254197-7256004 FORWARD LENGTH=298;; (*ITAG) Solyc08g079570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60234534-60239239 transcript_region:SL2.40ch08:60234534..60239239- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00012805g0010.1 protein AED:0.17 eAED:0.17 QI:317|1|1|1|0.83|0.71|7|960|428; (*GB) gi|224062095|ref|XP_002300752.1| (e_value=5e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2QQS5|CCT14_ORYSJ (e_value=9e-102) Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1;; (*TAIR) AT5G45190.1 (e_value=4e-102) | Symbols: | Cyclin family protein | chr5:18277808-18280733 REVERSE LENGTH=579;; (*ITAG) Solyc07g032480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:39099382-39103804 transcript_region:SL2.40ch07:39099382..39103804- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin family protein (AHRD V1 *-** D7MKU7_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515,GO:0016538 NbS00012805g0005.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|1|1|2|0|104 NbS00012805g0012.1 protein AED:0.02 eAED:0.02 QI:508|1|1|1|0.5|0.66|3|303|372; (*GB) gi|2499614|sp|Q40517.1|NTF3_TOBAC (e_value=0.0) RecName: Full=Mitogen-activated protein kinase homolog NTF3; AltName: Full=P43;; (*SWP) sp|Q40517|NTF3_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1;; (*TAIR) AT1G10210.2 (e_value=0.0) | Symbols: ATMPK1, MPK1 | mitogen-activated protein kinase 1 | chr1:3349579-3350776 FORWARD LENGTH=370;; (*ITAG) Solyc04g080730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62421080-62429518 transcript_region:SL2.40ch04:62421080..62429518+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** D9J1Y9_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00012805g0013.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.75|1|1|4|0|776; (*GB) gi|359489475|ref|XP_002267721.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis vinifera];; (*SWP) sp|Q8L838|COG4_ARATH (e_value=0.0) Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1;; (*TAIR) AT4G01400.2 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr4:573098-575648 REVERSE LENGTH=738;; (*ITAG) Solyc07g056010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61233825-61238820 transcript_region:SL2.40ch07:61233825..61238820- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 4 (AHRD V1 ***- COG4_ARATH); contains Interpro domain(s) IPR013167 COG4 transport "; GO:0005515 NbS00006372g0008.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0.57|1|1|1|7|0|627; (*GB) gi|255547490|ref|XP_002514802.1| (e_value=0.0) Protein AINTEGUMENTA, putative [Ricinus communis];; (*SWP) sp|Q8LSN2|BBM2_BRANA (e_value=1e-110) AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1;; (*TAIR) AT5G17430.1 (e_value=3e-103) | Symbols: BBM | Integrase-type DNA-binding superfamily protein | chr5:5742542-5745568 REVERSE LENGTH=584;; (*ITAG) Solyc11g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2751173-2756165 transcript_region:SL2.40ch11:2751173..2756165+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00006372g0009.1 protein AED:0.17 eAED:0.17 QI:128|0.9|0.90|1|0.5|0.72|11|265|439; (*GB) gi|33318329|gb|AAQ05032.1|AF468223_1 (e_value=0.0) phospholipase A1 [Nicotiana tabacum];; (*SWP) sp|Q93V61|LCAT3_ARATH (e_value=0.0) Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana GN=LCAT3 PE=1 SV=1;; (*TAIR) AT3G03310.1 (e_value=0.0) | Symbols: ATLCAT3, LCAT3 | lecithin:cholesterol acyltransferase 3 | chr3:778767-781488 REVERSE LENGTH=447;; (*ITAG) Solyc11g008550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2728127-2736389 transcript_region:SL2.40ch11:2728127..2736389+ go_terms:GO:0006629 functional_description:"Lecithin cholesterol acyltransferase family protein (AHRD V1 **-- D7L0F6_ARALY); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00010720g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.4|1|0.25|0.2|5|0|284; (*GB) gi|14150732|gb|AAK54610.1|AF374475_1 (e_value=1e-146) hypersensitive-induced response protein [Oryza sativa];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=8e-143) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=6e-144) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=6e-142) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00010720g0006.1 protein AED:0.06 eAED:0.06 QI:336|1|1|1|1|1|6|359|276; (*GB) gi|161788872|dbj|BAF95070.1| (e_value=0.0) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42055|VDAC1_SOLTU (e_value=2e-178) Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=2e-147) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc03g058920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24224821-24228703 transcript_region:SL2.40ch03:24224821..24228703+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00056063g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|182; (*ITAG) Solyc03g046190.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15877303-15877731 transcript_region:SL2.40ch03:15877303..15877731- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00002136g0001.1 protein AED:0.22 eAED:0.22 QI:308|0.66|0.57|1|0.83|0.85|7|445|405; (*GB) gi|297744499|emb|CBI37761.3| (e_value=8e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=4e-25) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT2G16750.1 (e_value=5e-25) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:7271786-7274446 FORWARD LENGTH=617;; (*ITAG) Solyc01g111950.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:89863123-89866285 transcript_region:SL2.40ch01:89863123..89866285+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002136g0013.1 protein AED:0.14 eAED:0.15 QI:0|0.75|0.4|1|0.75|0.6|5|0|306; (*GB) gi|225428249|ref|XP_002279442.1| (e_value=1e-91) PREDICTED: GDSL esterase/lipase At5g55050-like [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=7e-45) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=6e-46) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc01g111960.2.1 (e_value=1e-177) genomic_reference:SL2.40ch01 gene_region:89866618-89868839 transcript_region:SL2.40ch01:89866618..89868839- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00002136g0014.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.28|1|0.33|0.57|7|0|416; (*GB) gi|225428247|ref|XP_002282214.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Vitis vinifera];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=2e-122) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc01g111970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89869360-89872814 transcript_region:SL2.40ch01:89869360..89872814- go_terms:GO:0055114 functional_description:"Laccase 1a (AHRD V1 **-- B9IG56_POPTR); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00020214g0004.1 protein AED:0.26 eAED:0.26 QI:45|0.75|0.4|1|0.25|0.4|5|451|387; (*GB) gi|225442737|ref|XP_002280567.1| (e_value=7e-172) PREDICTED: GPI mannosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q500W7|PIGM_ARATH (e_value=6e-160) GPI mannosyltransferase 1 OS=Arabidopsis thaliana GN=PIGM PE=2 SV=1;; (*TAIR) AT5G22130.1 (e_value=5e-161) | Symbols: PNT1 | mannosyltransferase family protein | chr5:7337486-7339831 REVERSE LENGTH=450;; (*ITAG) Solyc02g083260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41291406-41294442 transcript_region:SL2.40ch02:41291406..41294442- go_terms:GO:0051751 functional_description:"GPI mannosyltransferase 1 (AHRD V1 **** A8NEB2_COPC7); contains Interpro domain(s) IPR007704 Mannosyltransferase, DXD "; GO:0051751 NbS00004266g0003.1 protein AED:0.17 eAED:0.39 QI:0|0|0|1|0|0|2|0|167; (*ITAG) Solyc00g019980.2.1 (e_value=5e-39) genomic_reference:SL2.40ch00 gene_region:11803308-11804537 transcript_region:SL2.40ch00:11803308..11804537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056483g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.93|0.87|1|0.66|0.68|16|854|646; (*GB) gi|255584625|ref|XP_002533036.1| (e_value=0.0) Magnesium and cobalt efflux protein corC, putative [Ricinus communis];; (*SWP) sp|Q9LK65|Y3307_ARATH (e_value=0.0) Putative DUF21 domain-containing protein At3g13070, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH1 PE=4 SV=1;; (*TAIR) AT3G13070.1 (e_value=0.0) | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr3:4191511-4195112 REVERSE LENGTH=661;; (*ITAG) Solyc07g065310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64344445-64352893 transcript_region:SL2.40ch07:64344445..64352893- functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- Q7P7S7_FUSNV); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00000944g0005.1 protein AED:0.15 eAED:0.17 QI:23|0.75|0.2|1|0.25|0.4|5|0|277; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=0.0) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=7e-134) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=5e-135) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=2e-174) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00017610g0002.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=9e-16) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=2e-14) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=5e-17) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00017610g0008.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=3e-30) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=3e-25) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=3e-30) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00017610g0009.1 protein AED:0.35 eAED:0.36 QI:0|0.71|0.75|1|0.85|0.75|8|373|264; (*GB) gi|224127830|ref|XP_002329188.1| (e_value=6e-79) predicted protein [Populus trichocarpa];; (*TAIR) AT1G33330.1 (e_value=3e-70) | Symbols: | Class I peptide chain release factor | chr1:12084968-12086238 FORWARD LENGTH=257;; (*ITAG) Solyc11g020590.1.1 (e_value=7e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11620106-11626050 transcript_region:SL2.40ch11:11620106..11626050+ go_terms:GO:0006415 functional_description:"Peptide chain release factor-like protein (AHRD V1 *-*- Q8S0P6_ORYSJ); contains Interpro domain(s) IPR000352 Class I peptide chain release factor "; GO:0006415 NbS00017610g0108.1 protein AED:0.22 eAED:0.22 QI:182|0.84|0.92|1|0.69|0.64|14|772|344 NbS00017610g0106.1 protein AED:0.18 eAED:0.30 QI:0|0|0|1|0|0|2|0|128 NbS00042523g0006.1 protein AED:0.18 eAED:0.31 QI:0|0.5|0.33|1|1|0.66|3|78|131; (*GB) gi|350538893|ref|NP_001234620.1| (e_value=4e-71) beta-mannosidase enzyme precursor [Solanum lycopersicum];; (*SWP) sp|Q5QMT0|BGL01_ORYSJ (e_value=2e-63) Beta-glucosidase 1 OS=Oryza sativa subsp. japonica GN=BGLU1 PE=2 SV=1;; (*TAIR) AT3G18070.2 (e_value=3e-62) | Symbols: BGLU43 | beta glucosidase 43 | chr3:6187294-6189947 FORWARD LENGTH=424;; (*ITAG) Solyc12g040640.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40136352-40141560 transcript_region:SL2.40ch12:40136352..40141560- go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00016829g0004.1 protein AED:0.34 eAED:0.34 QI:163|0.54|0.58|1|0.36|0.16|12|0|689; (*GB) gi|297737725|emb|CBI26926.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU35|AB7G_ARATH (e_value=0.0) ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1;; (*TAIR) AT2G01320.3 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:154487-158063 REVERSE LENGTH=728;; (*ITAG) Solyc05g008350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2707862-2717543 transcript_region:SL2.40ch05:2707862..2717543+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 7 (AHRD V1 **** AB7G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00007716g0016.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0.22|1|0.5|0.44|9|0|846; (*GB) gi|224138970|ref|XP_002322947.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64422|F16P1_ORYSJ (e_value=9e-174) Fructose-1,6-bisphosphatase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0267300 PE=2 SV=1;; (*TAIR) AT3G54050.2 (e_value=3e-171) | Symbols: HCEF1 | high cyclic electron flow 1 | chr3:20016951-20018527 FORWARD LENGTH=417;; (*ITAG) Solyc10g086730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64800838-64802453 transcript_region:SL2.40ch10:64800838..64802453+ go_terms:GO:0005975 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 ***- D0MHZ8_RHOM4); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0005975 NbS00007716g0017.1 protein AED:0.12 eAED:0.12 QI:0|0.4|0.16|0.83|0.8|0.83|6|0|484; (*GB) gi|225440568|ref|XP_002273523.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100242619 [Vitis vinifera];; (*TAIR) AT3G54060.2 (e_value=2e-56) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37960.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:20018902-20020826 REVERSE LENGTH=442;; (*ITAG) Solyc09g011820.2.1 (e_value=1e-163) genomic_reference:SL2.40ch09 gene_region:5092997-5097032 transcript_region:SL2.40ch09:5092997..5097032- functional_description:"Unknown Protein (AHRD V1)"; NbS00007716g0015.1 protein AED:0.21 eAED:0.36 QI:0|0.33|0|1|0.66|0.75|4|0|300; (*GB) gi|351713115|gb|EHB16034.1| (e_value=9e-125) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|Q8H7U1|TBB2_ORYSJ (e_value=7e-105) Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1;; (*TAIR) AT5G62700.1 (e_value=2e-105) | Symbols: TUB3 | tubulin beta chain 3 | chr5:25184501-25186426 FORWARD LENGTH=450;; (*ITAG) Solyc10g085020.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63679058-63680810 transcript_region:SL2.40ch10:63679058..63680810- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbS00009870g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|224137824|ref|XP_002326449.1| (e_value=5e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g068460.1.1 (e_value=2e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:32979704-32980282 transcript_region:SL2.40ch02:32979704..32980282- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00009870g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|224137824|ref|XP_002326449.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g068470.1.1 (e_value=6e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:32990372-32990839 transcript_region:SL2.40ch02:32990372..32990839- functional_description:"Unknown Protein (AHRD V1)"; NbS00009870g0010.1 protein AED:0.19 eAED:0.19 QI:82|1|1|1|0.33|0.75|4|440|156; (*GB) gi|21554348|gb|AAM63455.1| (e_value=4e-44) unknown [Arabidopsis thaliana];; (*SWP) sp|Q54PB2|MRD1_DICDI (e_value=9e-16) Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1;; (*TAIR) AT4G20030.1 (e_value=2e-45) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:10846362-10847246 FORWARD LENGTH=152;; (*ITAG) Solyc02g068440.2.1 (e_value=2e-84) genomic_reference:SL2.40ch02 gene_region:32968903-32972526 transcript_region:SL2.40ch02:32968903..32972526- go_terms:GO:0008266 functional_description:"RNA binding protein (AHRD V1 *-** B6U487_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00009870g0011.1 protein AED:0.00 eAED:0.00 QI:218|1|1|1|0.5|0.8|5|837|130; (*GB) gi|351727941|ref|NP_001236666.1| (e_value=1e-84) uncharacterized protein LOC100305531 [Glycine max];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=2e-77) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=1e-78) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=8e-79) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00009870g0005.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|4|0|67 NbS00022106g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|348162129|gb|AEP68101.1| (e_value=1e-41) raffinose synthase [Boea hygrometrica];; (*SWP) sp|Q5VQG4|RFS_ORYSJ (e_value=1e-35) Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1;; (*TAIR) AT5G40390.1 (e_value=2e-34) | Symbols: SIP1 | Raffinose synthase family protein | chr5:16161720-16165085 FORWARD LENGTH=783;; (*ITAG) Solyc02g086530.2.1 (e_value=5e-61) genomic_reference:SL2.40ch02 gene_region:43775103-43779306 transcript_region:SL2.40ch02:43775103..43779306- go_terms:GO:0047274 functional_description:"Alpha-galactosidase (AHRD V1 **-- C0NUM4_AJECG); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0047274 NbS00036516g0001.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|225439354|ref|XP_002270752.1| (e_value=9e-22) PREDICTED: uncharacterized protein LOC100259819 [Vitis vinifera];; (*ITAG) Solyc10g081700.1.1 (e_value=6e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62035823-62036750 transcript_region:SL2.40ch10:62035823..62036750+ functional_description:"Pollen preferential protein (AHRD V1 *-*- Q43713_LILLO)"; NbS00023516g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|669; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-141) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-142) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g012100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4412215-4415699 transcript_region:SL2.40ch04:4412215..4415699+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00023516g0011.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|176; (*GB) gi|242087053|ref|XP_002439359.1| (e_value=1e-14) hypothetical protein SORBIDRAFT_09g005100 [Sorghum bicolor];; (*SWP) sp|Q9SHI2|Y1723_ARATH (e_value=5e-14) Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2;; (*TAIR) AT1G17230.1 (e_value=4e-15) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:5891375-5894855 FORWARD LENGTH=1101;; (*ITAG) Solyc04g012100.1.1 (e_value=5e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4412215-4415699 transcript_region:SL2.40ch04:4412215..4415699+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00023516g0012.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.66|0.5|0.33|3|0|393; (*GB) gi|359492792|ref|XP_002278117.2| (e_value=5e-64) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=9e-47) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=7e-48) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g012100.1.1 (e_value=6e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4412215-4415699 transcript_region:SL2.40ch04:4412215..4415699+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00023516g0013.1 protein AED:0.43 eAED:0.49 QI:0|1|0|1|1|1|2|0|84; (*GB) gi|358343399|ref|XP_003635790.1| (e_value=1e-25) Receptor-like kinase [Medicago truncatula];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=2e-16) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT1G56720.3 (e_value=4e-18) | Symbols: | Protein kinase superfamily protein | chr1:21263630-21265559 REVERSE LENGTH=492;; (*ITAG) Solyc04g014900.2.1 (e_value=1e-36) genomic_reference:SL2.40ch04 gene_region:5145292-5147396 transcript_region:SL2.40ch04:5145292..5147396- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023516g0010.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|403; (*GB) gi|359482811|ref|XP_002270207.2| (e_value=8e-77) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=7e-52) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=5e-53) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g009640.2.1 (e_value=3e-155) genomic_reference:SL2.40ch04 gene_region:3012845-3016560 transcript_region:SL2.40ch04:3012845..3016560- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00023707g0015.1 protein AED:0.00 eAED:0.00 QI:439|1|0.5|1|0|0|2|0|55 NbS00023707g0005.1 protein AED:0.15 eAED:0.21 QI:0|0.81|0.91|1|0.90|0.83|12|112|935; (*GB) gi|255560611|ref|XP_002521319.1| (e_value=0.0) Exportin-T, putative [Ricinus communis];; (*SWP) sp|Q7PC79|XPOT_ARATH (e_value=0.0) Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1;; (*TAIR) AT1G72560.3 (e_value=0.0) | Symbols: PSD | ARM repeat superfamily protein | chr1:27325026-27329467 REVERSE LENGTH=988;; (*ITAG) Solyc03g122370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64287121-64295654 transcript_region:SL2.40ch03:64287121..64295654- go_terms:GO:0015932,GO:0000049 functional_description:"Exportin-t (AHRD V1 ***- Q7PC79_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0015932,GO:0000049 NbS00023707g0001.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|1|1|3|0|590; (*GB) gi|359483488|ref|XP_002273710.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SMZ2|PP347_ARATH (e_value=5e-127) Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1;; (*TAIR) AT4G33170.1 (e_value=4e-128) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15995701-15998673 REVERSE LENGTH=990;; (*ITAG) Solyc04g051480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:49752113-49754857 transcript_region:SL2.40ch04:49752113..49754857- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023707g0002.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|359483488|ref|XP_002273710.2| (e_value=2e-52) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=9e-38) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=7e-39) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc04g051480.1.1 (e_value=6e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:49752113-49754857 transcript_region:SL2.40ch04:49752113..49754857- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023707g0018.1 protein AED:0.28 eAED:0.32 QI:0|0|0|0.75|0.33|0.25|4|0|175; (*GB) gi|110433184|gb|ABG74350.1| (e_value=1e-56) cytochrome P450 [Capsicum chinense];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=6e-27) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=4e-28) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g122360.2.1 (e_value=5e-57) genomic_reference:SL2.40ch03 gene_region:64284455-64286504 transcript_region:SL2.40ch03:64284455..64286504+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00023707g0011.1 protein AED:0.43 eAED:0.59 QI:51|-1|0|1|-1|1|1|0|43; (*GB) gi|85068606|gb|ABC69383.1| (e_value=2e-14) CYP92A2v4 [Nicotiana tabacum];; (*ITAG) Solyc03g122350.2.1 (e_value=5e-17) genomic_reference:SL2.40ch03 gene_region:64280253-64282856 transcript_region:SL2.40ch03:64280253..64282856+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00001382g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.61|0.92|0.66|0.61|13|0|687; (*GB) gi|359476999|ref|XP_002263942.2| (e_value=0.0) PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=6e-50) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT4G24970.1 (e_value=2e-24) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc02g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40576895-40587329 transcript_region:SL2.40ch02:40576895..40587329+ go_terms:GO:0005524,GO:0008270 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524,GO:0008270 NbS00001382g0014.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|5|287|331; (*GB) gi|255583444|ref|XP_002532481.1| (e_value=1e-39) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G33620.4 (e_value=5e-37) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc02g038760.2.1 (e_value=6e-71) genomic_reference:SL2.40ch02 gene_region:22246946-22251700 transcript_region:SL2.40ch02:22246946..22251700+ go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 ***- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00001382g0012.1 protein AED:0.21 eAED:0.21 QI:113|1|0.66|1|0|0|3|0|95 NbS00001382g0018.1 protein AED:0.19 eAED:0.19 QI:141|1|0.94|1|0.87|0.76|17|0|681; (*GB) gi|359477042|ref|XP_002263973.2| (e_value=0.0) PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Vitis vinifera];; (*SWP) sp|Q9NYV6|RRN3_HUMAN (e_value=3e-32) RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens GN=RRN3 PE=1 SV=1;; (*TAIR) AT2G34750.1 (e_value=2e-177) | Symbols: | RNA polymerase I specific transcription initiation factor RRN3 protein | chr2:14660449-14663792 REVERSE LENGTH=613;; (*ITAG) Solyc02g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40610636-40618232 transcript_region:SL2.40ch02:40610636..40618232- go_terms:GO:0003701 functional_description:"RNA polymerase I-specific transcription initiation factor RRN3 (AHRD V1 **** RRN3_MOUSE); contains Interpro domain(s) IPR007991 RNA polymerase I specific transcription initiation factor RRN3 "; GO:0003701 NbS00023252g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|359478371|ref|XP_002285314.2| (e_value=4e-90) PREDICTED: receptor like protein kinase S.2-like [Vitis vinifera];; (*SWP) sp|Q9LMN8|WAK3_ARATH (e_value=2e-17) Wall-associated receptor kinase 3 OS=Arabidopsis thaliana GN=WAK3 PE=2 SV=2;; (*TAIR) AT3G57120.1 (e_value=4e-87) | Symbols: | Protein kinase superfamily protein | chr3:21139099-21140469 FORWARD LENGTH=456;; (*ITAG) Solyc06g075030.1.1 (e_value=3e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42943944-42945281 transcript_region:SL2.40ch06:42943944..42945281+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM62_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003630g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|458; (*GB) gi|213868273|gb|ACJ54183.1| (e_value=2e-150) PB1 domain-containing protein [Nicotiana benthamiana];; (*TAIR) AT5G09620.1 (e_value=7e-59) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:2983757-2985352 REVERSE LENGTH=531;; (*ITAG) Solyc04g076820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59289748-59291172 transcript_region:SL2.40ch04:59289748..59291172- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7MPG4_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00003630g0116.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.66|3|0|332 NbS00003630g0112.1 protein AED:0.50 eAED:0.50 QI:21|0|0.2|0.8|0.25|0.6|5|0|89 NbS00003630g0103.1 protein AED:0.14 eAED:0.14 QI:1416|0.55|0.8|0.9|0.88|0.8|10|447|286 NbS00032651g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|357445631|ref|XP_003593093.1| (e_value=6e-25) Transmembrane protein 87B [Medicago truncatula];; (*TAIR) AT2G01070.1 (e_value=2e-24) | Symbols: | Lung seven transmembrane receptor family protein | chr2:75596-77625 FORWARD LENGTH=496;; (*ITAG) Solyc10g045600.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30297711-30304480 transcript_region:SL2.40ch10:30297711..30304480+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00058693g0008.1 protein AED:0.19 eAED:0.19 QI:233|0.75|0.6|1|1|0.8|5|0|235; (*GB) gi|302701824|gb|ADL61840.1| (e_value=4e-126) delta 1-pyrroline-5-carboxylate synthetase [Nicotiana tabacum];; (*SWP) sp|Q96480|P5CS_SOLLC (e_value=2e-121) Delta-1-pyrroline-5-carboxylate synthase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1;; (*TAIR) AT2G39800.4 (e_value=1e-100) | Symbols: P5CS1 | delta1-pyrroline-5-carboxylate synthase 1 | chr2:16598516-16602939 REVERSE LENGTH=717;; (*ITAG) Solyc08g043170.2.1 (e_value=8e-123) genomic_reference:SL2.40ch08 gene_region:30051615-30064445 transcript_region:SL2.40ch08:30051615..30064445- go_terms:GO:0004349,GO:0017084 functional_description:"Gamma-glutamyl phosphate reductase (AHRD V1 ***- D3TQ43_GLOMM); contains Interpro domain(s) IPR005766 Delta l-pyrroline-5-carboxylate synthetase "; GO:0004349,GO:0017084 NbS00058693g0007.1 protein AED:0.21 eAED:0.21 QI:0|1|0.78|1|1|1|14|78|492; (*GB) gi|302701824|gb|ADL61840.1| (e_value=0.0) delta 1-pyrroline-5-carboxylate synthetase [Nicotiana tabacum];; (*SWP) sp|Q96480|P5CS_SOLLC (e_value=0.0) Delta-1-pyrroline-5-carboxylate synthase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1;; (*TAIR) AT3G55610.1 (e_value=0.0) | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate synthase 2 | chr3:20624278-20628989 REVERSE LENGTH=726;; (*ITAG) Solyc08g043170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:30051615-30064445 transcript_region:SL2.40ch08:30051615..30064445- go_terms:GO:0004349,GO:0017084 functional_description:"Gamma-glutamyl phosphate reductase (AHRD V1 ***- D3TQ43_GLOMM); contains Interpro domain(s) IPR005766 Delta l-pyrroline-5-carboxylate synthetase "; GO:0004349,GO:0017084 NbC24851627g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|225428334|ref|XP_002279974.1| (e_value=2e-120) PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=2e-113) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=1e-114) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=4e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003316g0005.1 protein AED:0.48 eAED:0.48 QI:0|0.75|0.8|0.8|1|1|5|176|130; (*GB) gi|350540060|ref|NP_001234630.1| (e_value=4e-63) autophagy 8a [Solanum lycopersicum];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=3e-61) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT4G21980.1 (e_value=2e-61) | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily protein | chr4:11655913-11656809 FORWARD LENGTH=122;; (*ITAG) Solyc07g064680.2.1 (e_value=7e-66) genomic_reference:SL2.40ch07 gene_region:63944779-63947783 transcript_region:SL2.40ch07:63944779..63947783+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00022829g0004.1 protein AED:0.33 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|275; (*GB) gi|255558374|ref|XP_002520214.1| (e_value=1e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G68360.1 (e_value=1e-13) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g006310.1.1 (e_value=5e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:960800-961552 transcript_region:SL2.40ch05:960800..961552- go_terms:GO:0003700 functional_description:"Zinc finger protein 6 (AHRD V1 *-*- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00022829g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69; (*ITAG) Solyc04g014770.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:5013058-5013258 transcript_region:SL2.40ch04:5013058..5013258+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016809g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|195; (*GB) gi|225453046|ref|XP_002267312.1| (e_value=2e-88) PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera];; (*TAIR) AT5G28490.1 (e_value=8e-79) | Symbols: LSH1 | Protein of unknown function (DUF640) | chr5:10454541-10455113 REVERSE LENGTH=190;; (*ITAG) Solyc05g055020.2.1 (e_value=1e-105) genomic_reference:SL2.40ch05 gene_region:63942586-63944841 transcript_region:SL2.40ch05:63942586..63944841- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00000073g0003.1 protein AED:0.05 eAED:0.05 QI:188|0.8|0.83|1|0.6|0.66|6|276|141; (*GB) gi|296086145|emb|CBI31586.3| (e_value=4e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G55646.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39855.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:20645087-20646148 FORWARD LENGTH=146;; (*ITAG) Solyc05g052890.2.1 (e_value=2e-46) genomic_reference:SL2.40ch05 gene_region:62215390-62217617 transcript_region:SL2.40ch05:62215390..62217617- functional_description:"Unknown Protein (AHRD V1)"; NbS00000073g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|203; (*GB) gi|225449274|ref|XP_002281029.1| (e_value=3e-65) PREDICTED: UDP-glycosyltransferase 85A1 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LMF0|U85A5_ARATH (e_value=7e-21) UDP-glycosyltransferase 85A5 OS=Arabidopsis thaliana GN=UGT85A5 PE=2 SV=1;; (*TAIR) AT1G22370.2 (e_value=5e-22) | Symbols: AtUGT85A5, UGT85A5 | UDP-glucosyl transferase 85A5 | chr1:7898116-7899879 REVERSE LENGTH=479;; (*ITAG) Solyc05g052870.2.1 (e_value=9e-103) genomic_reference:SL2.40ch05 gene_region:62198443-62200532 transcript_region:SL2.40ch05:62198443..62200532+ go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **-* C6KI45_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00017713g0003.1 protein AED:0.21 eAED:0.21 QI:383|0.75|0.8|1|0.25|0.2|5|625|497; (*GB) gi|359473294|ref|XP_002274433.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257102 [Vitis vinifera];; (*TAIR) AT1G27100.1 (e_value=2e-154) | Symbols: | Actin cross-linking protein | chr1:9407557-9411074 REVERSE LENGTH=519;; (*ITAG) Solyc05g006780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1400482-1407165 transcript_region:SL2.40ch05:1400482..1407165+ functional_description:"NPH3 domain containing protein-like (AHRD V1 *-*- Q8GVF8_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00017713g0011.1 protein AED:0.26 eAED:0.26 QI:174|0.33|0.5|1|0|0|4|0|211 NbS00000957g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|255562154|ref|XP_002522085.1| (e_value=4e-52) mads box protein, putative [Ricinus communis];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-41) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=2e-42) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=3e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00000957g0007.1 protein AED:0.26 eAED:0.29 QI:0|0.33|0.25|1|0.33|0|4|0|145; (*GB) gi|1546817|gb|AAB08428.1| (e_value=6e-80) patatin homolog [Nicotiana tabacum];; (*SWP) sp|Q3YJS9|PT3K1_SOLTU (e_value=6e-42) Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1;; (*TAIR) AT4G37070.2 (e_value=1e-26) | Symbols: PLP1, PLA IVA, AtPLAIVA | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | chr4:17464916-17467058 REVERSE LENGTH=414;; (*ITAG) Solyc08g006850.2.1 (e_value=5e-31) genomic_reference:SL2.40ch08 gene_region:1388591-1394719 transcript_region:SL2.40ch08:1388591..1394719+ go_terms:GO:0045735,GO:0004620 functional_description:"Patatin-like phospholipase family protein (AHRD V1 **** Q2QNW3_ORYSJ); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0004620 NbS00054369g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.33|1|1|1|6|0|558; (*GB) gi|255557635|ref|XP_002519847.1| (e_value=0.0) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1629019-1634350 transcript_region:SL2.40ch08:1629019..1634350+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00007875g0003.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.25|1|1|4|0|107 NbS00027103g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0.66|3|0|383; (*GB) gi|357447681|ref|XP_003594116.1| (e_value=2e-119) hypothetical protein MTR_2g021580 [Medicago truncatula];; (*TAIR) AT3G19430.1 (e_value=6e-111) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc01g107720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86928473-86929971 transcript_region:SL2.40ch01:86928473..86929971+ functional_description:"Root cap protein 3 (Fragment) (AHRD V1 ***- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00027103g0002.1 protein AED:0.36 eAED:0.38 QI:0|0.62|0.66|1|0.87|0.77|9|235|323; (*GB) gi|255555311|ref|XP_002518692.1| (e_value=1e-133) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q81CK1|KYNB_BACCR (e_value=7e-14) Kynurenine formamidase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=kynB PE=1 SV=1;; (*TAIR) AT4G35220.1 (e_value=2e-130) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc01g107700.2.1 (e_value=5e-164) genomic_reference:SL2.40ch01 gene_region:86915524-86922302 transcript_region:SL2.40ch01:86915524..86922302+ go_terms:GO:0004061 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061 NbS00055477g0007.1 protein AED:0.07 eAED:0.07 QI:141|0.8|0.83|1|0.8|1|6|425|365; (*GB) gi|12718824|dbj|BAB32406.1| (e_value=0.0) NRK1 MAPK [Nicotiana tabacum];; (*SWP) sp|Q40531|NTF6_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1;; (*TAIR) AT1G07880.2 (e_value=0.0) | Symbols: ATMPK13 | Protein kinase superfamily protein | chr1:2434193-2435712 REVERSE LENGTH=363;; (*ITAG) Solyc11g072630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52945837-52949594 transcript_region:SL2.40ch11:52945837..52949594+ go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase (AHRD V1 ***- Q8LT15_SOLTU); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0006468 NbS00055477g0010.1 protein AED:0.25 eAED:0.25 QI:23|0.88|0.9|1|0.77|0.8|10|369|368; (*GB) gi|359479028|ref|XP_002284705.2| (e_value=0.0) PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LCU7|MECR_ARATH (e_value=0.0) Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1;; (*TAIR) AT3G45770.1 (e_value=0.0) | Symbols: | Polyketide synthase, enoylreductase family protein | chr3:16805753-16807774 REVERSE LENGTH=375;; (*ITAG) Solyc11g072640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52950435-52955286 transcript_region:SL2.40ch11:52950435..52955286- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Mitochondrial trans-2-enoyl-CoA reductase (AHRD V1 **-- D2VNA9_NAEGR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00019931g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|357496535|ref|XP_003618556.1| (e_value=1e-63) Ethylene-responsive transcription factor [Medicago truncatula];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=6e-19) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=5e-20) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc02g067020.1.1 (e_value=3e-89) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:31838645-31839547 transcript_region:SL2.40ch02:31838645..31839547+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6TYT8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00019931g0008.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.33|1|1|3|0|62 NbS00019931g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.91|0.92|1|0.75|0.84|13|92|645; (*GB) gi|350535933|ref|NP_001233965.1| (e_value=0.0) SNF1 protein [Solanum lycopersicum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.2 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-34143 REVERSE LENGTH=535;; (*ITAG) Solyc02g067030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31839840-31851609 transcript_region:SL2.40ch02:31839840..31851609- go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase catalytic subunit alpha-2 (AHRD V1 **** D1LWW2_SACKO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00011877g0024.1 protein AED:0.16 eAED:0.16 QI:24|0.6|0.66|1|0|0.33|6|267|214; (*GB) gi|224062379|ref|XP_002300825.1| (e_value=6e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54W07|BUD32_DICDI (e_value=7e-41) Probable serine/threonine-protein kinase BUD32 homolog OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1;; (*TAIR) AT5G26110.1 (e_value=6e-95) | Symbols: | Protein kinase superfamily protein | chr5:9118239-9119352 REVERSE LENGTH=226;; (*ITAG) Solyc06g084160.2.1 (e_value=6e-99) genomic_reference:SL2.40ch06 gene_region:45662381-45666602 transcript_region:SL2.40ch06:45662381..45666602+ go_terms:GO:0004674,GO:0002039 functional_description:"Serine/threonine-protein kinase bud32 (EC 2.7.11.1) (AHRD V1 **** C8VPJ3_EMENI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0002039 NbS00011877g0025.1 protein AED:0.35 eAED:0.40 QI:7|0.75|0.6|1|0.75|0.6|5|0|130; (*GB) gi|225455814|ref|XP_002272187.1| (e_value=5e-81) PREDICTED: protein Dr1 homolog [Vitis vinifera];; (*SWP) sp|P49592|NC2B_ARATH (e_value=2e-74) Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1;; (*TAIR) AT5G23090.4 (e_value=2e-77) | Symbols: NF-YB13 | nuclear factor Y, subunit B13 | chr5:7749391-7750203 FORWARD LENGTH=158;; (*ITAG) Solyc06g069310.2.1 (e_value=2e-77) genomic_reference:SL2.40ch06 gene_region:39454559-39458600 transcript_region:SL2.40ch06:39454559..39458600- go_terms:GO:0003700,GO:0003714 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 **-* B6UH02_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003700,GO:0003714 NbS00011877g0027.1 protein AED:0.05 eAED:0.05 QI:117|1|1|1|1|1|4|194|228; (*GB) gi|297834764|ref|XP_002885264.1| (e_value=2e-93) single-strand-binding family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84J78|SSBP_ARATH (e_value=1e-26) Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1;; (*TAIR) AT3G18580.1 (e_value=1e-94) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:6396940-6398068 REVERSE LENGTH=217;; (*ITAG) Solyc12g038370.1.1 (e_value=1e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:35153069-35158394 transcript_region:SL2.40ch12:35153069..35158394+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding protein (AHRD V1 ***- B6U5B2_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003697 NbS00011877g0023.1 protein AED:0.10 eAED:0.10 QI:200|1|1|1|1|1|7|343|615; (*GB) gi|225451956|ref|XP_002283177.1| (e_value=0.0) PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera];; (*SWP) sp|Q63186|EI2BD_RAT (e_value=1e-109) Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1;; (*TAIR) AT5G38640.1 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642;; (*ITAG) Solyc12g038340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35123024-35129177 transcript_region:SL2.40ch12:35123024..35129177+ go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B delta subunit (AHRD V1 **-* B6U6N6_MAIZE); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0005085 NbS00011877g0026.1 protein AED:0.16 eAED:0.16 QI:171|1|1|1|0.84|0.85|14|705|721; (*GB) gi|255541886|ref|XP_002512007.1| (e_value=0.0) acetyl-CoA synthetase, putative [Ricinus communis];; (*SWP) sp|F4KBF3|AAE17_ARATH (e_value=0.0) Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1;; (*TAIR) AT5G23050.1 (e_value=0.0) | Symbols: AAE17 | acyl-activating enzyme 17 | chr5:7731513-7735399 REVERSE LENGTH=721;; (*ITAG) Solyc12g038400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35197846-35215974 transcript_region:SL2.40ch12:35197846..35215974+ go_terms:GO:0016874 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016874 NbS00011877g0015.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.2|1|1|5|0|173; (*GB) gi|57013977|ref|YP_173449.1| (e_value=2e-43) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00025860g0007.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|0|0.33|3|0|449; (*GB) gi|300827456|gb|ADK36668.1| (e_value=4e-79) cytosolic class I small heat shock protein 3B [Nicotiana tabacum];; (*SWP) sp|O82012|HSP12_SOLPE (e_value=2e-73) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT1G07400.1 (e_value=1e-62) | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157;; (*ITAG) Solyc06g076560.1.1 (e_value=2e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43949614-43950078 transcript_region:SL2.40ch06:43949614..43950078+ go_terms:GO:0051082 functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00029397g0013.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|1|1|2|0|198; (*GB) gi|110826035|gb|ABH01084.1| (e_value=2e-23) putative ROX1 [Nicotiana tabacum];; (*ITAG) Solyc02g077710.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37172109-37173137 transcript_region:SL2.40ch02:37172109..37173137+ functional_description:"E6-2 protein kinase (AHRD V1 *-*- B6E139_GOSHI)"; NbS00029397g0015.1 protein AED:0.30 eAED:0.32 QI:9|0|0|0.83|0.6|0.5|6|0|321; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*ITAG) Solyc10g009140.2.1 (e_value=7e-76) genomic_reference:SL2.40ch10 gene_region:3141186-3146147 transcript_region:SL2.40ch10:3141186..3146147- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00029397g0014.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0.25|1|0.33|0.25|4|0|248; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=1e-69) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=2e-58) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=3e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc10g009140.2.1 (e_value=3e-91) genomic_reference:SL2.40ch10 gene_region:3141186-3146147 transcript_region:SL2.40ch10:3141186..3146147- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00050448g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|609; (*GB) gi|225446575|ref|XP_002276422.1| (e_value=0.0) PREDICTED: ABC transporter G family member 10 [Vitis vinifera];; (*SWP) sp|Q9MAH4|AB10G_ARATH (e_value=0.0) ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1;; (*TAIR) AT1G53270.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr1:19862878-19864650 FORWARD LENGTH=590;; (*ITAG) Solyc07g053300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59094564-59096390 transcript_region:SL2.40ch07:59094564..59096390- go_terms:GO:0017127 functional_description:"ABC transporter G family member 10 (AHRD V1 **** AB10G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00043114g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|349; (*GB) gi|154425489|dbj|BAF74750.1| (e_value=0.0) potassium channel [Nicotiana tabacum];; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=1e-128) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=8e-130) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc10g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:763795-765374 transcript_region:SL2.40ch10:763795..765374- go_terms:GO:0015271,GO:0015269 functional_description:"Calcium-activated outward-rectifying potassium channel 1 (AHRD V1 **** B6TSL7_MAIZE); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00056530g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|602; (*GB) gi|225448934|ref|XP_002272074.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266758 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc11g008200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2442694-2444508 transcript_region:SL2.40ch11:2442694..2444508- functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00012501g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.71|0.85|1|1|7|315|152; (*GB) gi|356513117|ref|XP_003525260.1| (e_value=1e-84) PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Glycine max];; (*SWP) sp|Q5N9Q7|PTHM_ORYSJ (e_value=7e-82) Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1;; (*TAIR) AT1G18440.1 (e_value=1e-80) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr1:6345994-6347686 FORWARD LENGTH=288;; (*ITAG) Solyc12g037970.1.1 (e_value=3e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:33685764-33688566 transcript_region:SL2.40ch12:33685764..33688566+ go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00018866g0003.1 protein AED:0.06 eAED:0.07 QI:15|1|1|1|1|1|4|308|271; (*GB) gi|62526573|gb|AAX84672.1| (e_value=4e-160) aldo/keto reductase AKR [Manihot esculenta];; (*SWP) sp|P40691|A115_TOBAC (e_value=3e-157) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60710.1 (e_value=3e-156) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67196720-67200070 transcript_region:SL2.40ch09:67196720..67200070+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00061669g0003.1 protein AED:0.34 eAED:0.42 QI:220|0.33|0.25|1|0|0.25|4|0|182; (*GB) gi|388498352|gb|AFK37242.1| (e_value=1e-94) unknown [Medicago truncatula];; (*SWP) sp|O42901|YBA9_SCHPO (e_value=7e-26) Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.09c PE=2 SV=3;; (*TAIR) AT5G42000.1 (e_value=1e-93) | Symbols: | ORMDL family protein | chr5:16799455-16800681 FORWARD LENGTH=154;; (*ITAG) Solyc08g082920.2.1 (e_value=9e-105) genomic_reference:SL2.40ch08 gene_region:62736967-62742549 transcript_region:SL2.40ch08:62736967..62742549- go_terms:GO:0042802 functional_description:"ORM1-like protein 2 (AHRD V1 ***- B4FEN2_MAIZE); contains Interpro domain(s) IPR007203 ORMDL "; GO:0042802 NbS00058472g0005.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|1|1|3|0|623; (*GB) gi|255554182|ref|XP_002518131.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q7ZYD9|A13CB_XENLA (e_value=1e-37) Ankyrin repeat domain-containing protein 13C-B OS=Xenopus laevis GN=ankrd13c-b PE=2 SV=1;; (*TAIR) AT1G04780.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00058472g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|28629497|gb|AAO45013.1| (e_value=2e-30) S-adenosyl-L-methionine:benzoic acid/salicylic acid carboxyl methyltransferase [Petunia x hybrida];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=4e-23) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT3G11480.1 (e_value=3e-13) | Symbols: BSMT1, ATBSMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:3614544-3617137 FORWARD LENGTH=379;; (*ITAG) Solyc04g055260.2.1 (e_value=6e-46) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00000869g0010.1 protein AED:0.35 eAED:0.35 QI:344|1|0.85|1|0.66|0.71|7|336|243; (*GB) gi|15229471|ref|NP_187413.1| (e_value=8e-82) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G07565.1 (e_value=2e-84) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=258;; (*ITAG) Solyc09g020000.2.1 (e_value=2e-104) genomic_reference:SL2.40ch09 gene_region:18083123-18106956 transcript_region:SL2.40ch09:18083123..18106956- functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *-*- Q9SRQ9_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; NbS00000869g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|101; (*ITAG) Solyc04g053070.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00000869g0007.1 protein AED:0.38 eAED:0.42 QI:0|0.33|0.5|1|0|0.25|4|459|167; (*GB) gi|255583391|ref|XP_002532456.1| (e_value=5e-52) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT5G12230.1 (e_value=9e-43) | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3953915-3955285 REVERSE LENGTH=221;; (*ITAG) Solyc06g082900.2.1 (e_value=1e-63) genomic_reference:SL2.40ch06 gene_region:44822651-44825024 transcript_region:SL2.40ch06:44822651..44825024+ functional_description:"Genomic DNA chromosome 5 P1 clone MXC9 (AHRD V1 *-*- Q9FMP0_ARATH)"; NbS00038534g0007.1 protein AED:0.46 eAED:0.65 QI:24|0.33|0|0.5|1|1|4|0|153; (*GB) gi|149941651|dbj|BAF64847.1| (e_value=6e-66) Cdc27B [Nicotiana benthamiana];; (*SWP) sp|Q8LGU6|CD27B_ARATH (e_value=6e-59) Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1;; (*TAIR) AT2G20000.1 (e_value=5e-60) | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744;; (*ITAG) Solyc03g061600.2.1 (e_value=2e-65) genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00003559g0005.1 protein AED:0.18 eAED:0.18 QI:578|1|1|1|0.88|0.8|10|694|266; (*GB) gi|255571033|ref|XP_002526467.1| (e_value=1e-177) ELMO domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=5e-30) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G60260.4 (e_value=2e-170) | Symbols: | ELMO/CED-12 family protein | chr3:22274303-22276839 FORWARD LENGTH=266;; (*ITAG) Solyc01g089980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75451177-75457993 transcript_region:SL2.40ch01:75451177..75457993- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein (AHRD V1 ***- Q16Y60_AEDAE); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00003559g0006.1 protein AED:0.22 eAED:0.22 QI:158|1|1|1|1|1|4|154|148; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=4e-103) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=1e-104) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=2e-91) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=4e-102) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00031975g0001.1 protein AED:0.30 eAED:0.69 QI:0|-1|0|1|-1|1|1|0|243 NbS00031975g0003.1 protein AED:0.81 eAED:0.85 QI:0|0|0|0.2|1|1|5|0|95 NbS00043669g0003.1 protein AED:0.07 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|393; (*GB) gi|255583593|ref|XP_002532552.1| (e_value=3e-124) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G50660.1 (e_value=5e-108) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc12g005010.1.1 (e_value=1e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00024021g0004.1 protein AED:0.05 eAED:0.05 QI:219|0.6|0.83|1|0.8|0.66|6|496|428; (*GB) gi|224102803|ref|XP_002312807.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3TPR7|T184C_MOUSE (e_value=2e-27) Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1;; (*TAIR) AT4G38360.2 (e_value=0.0) | Symbols: LAZ1 | Protein of unknown function (DUF300) | chr4:17967389-17969798 FORWARD LENGTH=485;; (*ITAG) Solyc07g054320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59998444-60010915 transcript_region:SL2.40ch07:59998444..60010915+ functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; NbS00017499g0017.1 protein AED:0.30 eAED:0.34 QI:0|0.57|0.37|0.62|0.71|0.75|8|0|228; (*GB) gi|356543296|ref|XP_003540098.1| (e_value=3e-98) PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max];; (*SWP) sp|Q9PKL1|KDSB_CHLMU (e_value=8e-41) 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2;; (*TAIR) AT1G53000.1 (e_value=2e-98) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=1e-103) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00017499g0013.1 protein AED:0.37 eAED:0.37 QI:79|1|0.92|1|0.83|0.92|13|0|519; (*GB) gi|359493669|ref|XP_002282332.2| (e_value=0.0) PREDICTED: PAP-associated domain-containing protein 5-like [Vitis vinifera];; (*SWP) sp|Q68ED3|PAPD5_MOUSE (e_value=2e-72) PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5 PE=2 SV=2;; (*TAIR) AT5G53770.1 (e_value=0.0) | Symbols: | Nucleotidyltransferase family protein | chr5:21826733-21829858 FORWARD LENGTH=530;; (*ITAG) Solyc10g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1395368-1403268 transcript_region:SL2.40ch10:1395368..1403268- go_terms:GO:0043221 functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 **-- TRF5_YEAST); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0043221 NbS00017499g0008.1 protein AED:0.24 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|133 NbS00017499g0018.1 protein AED:0.30 eAED:0.54 QI:0|0|0|1|0.33|0.25|4|0|220; (*ITAG) Solyc01g094420.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00017499g0019.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.5|0|0.5|2|0|71 NbS00010850g0119.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|420 NbS00010850g0117.1 protein AED:0.00 eAED:0.00 QI:26|1|1|1|0|0.5|2|331|58 NbS00010850g0121.1 protein AED:0.07 eAED:0.14 QI:57|0.33|0|1|0.33|0.25|4|0|244 NbS00010850g0118.1 protein AED:0.22 eAED:0.22 QI:18|1|1|1|1|1|2|395|71 NbS00010850g0120.1 protein AED:0.14 eAED:0.23 QI:68|0.5|0.33|1|0.5|0.33|3|0|239 NbS00018005g0005.1 protein AED:0.15 eAED:0.15 QI:331|0.93|0.94|1|1|1|17|0|776; (*GB) gi|225461150|ref|XP_002282749.1| (e_value=0.0) PREDICTED: kinesin-3 [Vitis vinifera];; (*SWP) sp|Q07970|ATK1_ARATH (e_value=0.0) Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1;; (*TAIR) AT4G21270.1 (e_value=0.0) | Symbols: ATK1, KATA, KATAP | kinesin 1 | chr4:11329579-11333884 REVERSE LENGTH=793;; (*ITAG) Solyc07g064030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63553126-63558435 transcript_region:SL2.40ch07:63553126..63558435+ go_terms:GO:0008569 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9M0X6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008569 NbC24258581g0003.1 protein AED:0.06 eAED:0.21 QI:37|1|0|1|0|0.5|2|0|66; (*GB) gi|110349915|emb|CAJ19271.1| (e_value=9e-40) SUMO activating enzyme 2 [Solanum commersonii];; (*SWP) sp|Q9SJT1|SAE2_ARATH (e_value=7e-27) SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1;; (*TAIR) AT2G21470.2 (e_value=5e-28) | Symbols: SAE2, ATSAE2, EMB2764 | SUMO-activating enzyme 2 | chr2:9198752-9202136 FORWARD LENGTH=700;; (*ITAG) Solyc01g109960.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:88537753-88546575 transcript_region:SL2.40ch01:88537753..88546575- go_terms:GO:0019948 functional_description:"Ubiquitin-activating enzyme E1 3 (AHRD V1 **** B2VT99_PYRTR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019948 NbS00008470g0014.1 protein AED:0.06 eAED:0.12 QI:0|0|0|1|1|1|2|0|705; (*GB) gi|359496368|ref|XP_003635220.1| (e_value=2e-169) PREDICTED: uncharacterized protein LOC100242100 [Vitis vinifera];; (*SWP) sp|Q8VZ17|SUVH6_ARATH (e_value=7e-143) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2;; (*TAIR) AT2G22740.1 (e_value=5e-144) | Symbols: SUVH6, SDG23 | SU(VAR)3-9 homolog 6 | chr2:9664256-9666628 REVERSE LENGTH=790;; (*ITAG) Solyc03g093710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48793047-48795563 transcript_region:SL2.40ch03:48793047..48795563- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00008470g0012.1 protein AED:0.14 eAED:0.21 QI:0|0.5|0|1|0.5|0.33|3|0|276; (*GB) gi|344227185|gb|AEN03272.1| (e_value=4e-150) methionine sulfoxide reductase A4 [Solanum lycopersicum];; (*SWP) sp|Q9SEC2|MSRA_LACSA (e_value=2e-128) Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1;; (*TAIR) AT4G25130.1 (e_value=7e-118) | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898802-12899998 REVERSE LENGTH=258;; (*ITAG) Solyc03g093690.2.1 (e_value=8e-153) genomic_reference:SL2.40ch03 gene_region:48771078-48774007 transcript_region:SL2.40ch03:48771078..48774007+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D2B4D8_STRRD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00008470g0010.1 protein AED:0.26 eAED:0.26 QI:152|1|1|1|1|1|3|336|151; (*GB) gi|146220098|gb|ABQ11263.1| (e_value=5e-108) mago nashi-like protein 2 [Physalis pubescens];; (*SWP) sp|O65806|MGN_EUPLA (e_value=4e-99) Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1;; (*TAIR) AT1G02140.1 (e_value=1e-98) | Symbols: MEE63, MAGO, HAP1 | mago nashi family protein | chr1:403467-404401 REVERSE LENGTH=150;; (*ITAG) Solyc03g093680.2.1 (e_value=3e-112) genomic_reference:SL2.40ch03 gene_region:48763706-48768132 transcript_region:SL2.40ch03:48763706..48768132+ go_terms:GO:0032183 functional_description:"Mago nashi-like protein 2 (AHRD V1 ***- A5H9J2_9SOLA); contains Interpro domain(s) IPR004023 Mago nashi protein "; GO:0032183 NbS00062185g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|67 NbS00012996g0015.1 protein AED:0.05 eAED:0.04 QI:445|0.85|0.5|1|0.57|0.5|8|304|672; (*GB) gi|255544033|ref|XP_002513079.1| (e_value=2e-123) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G54500.1 (e_value=5e-71) | Symbols: | BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:20175792-20178737 REVERSE LENGTH=648;; (*ITAG) Solyc01g105120.2.1 (e_value=7e-15) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00012996g0016.1 protein AED:0.20 eAED:0.20 QI:105|1|1|1|1|1|2|289|446; (*GB) gi|255575993|ref|XP_002528892.1| (e_value=1e-70) hypothetical protein RCOM_0187400 [Ricinus communis];; (*TAIR) AT3G53440.2 (e_value=3e-44) | Symbols: | Homeodomain-like superfamily protein | chr3:19810936-19812474 FORWARD LENGTH=512;; (*ITAG) Solyc01g068540.2.1 (e_value=9e-163) genomic_reference:SL2.40ch01 gene_region:70151031-70157046 transcript_region:SL2.40ch01:70151031..70157046+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017877 MYB-like "; NbS00012996g0020.1 protein AED:0.20 eAED:0.21 QI:0|0.75|0.4|1|0.75|0.8|5|0|255; (*GB) gi|224128117|ref|XP_002320248.1| (e_value=1e-103) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02330.1 (e_value=5e-90) | Symbols: | CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). | chr1:462202-463521 REVERSE LENGTH=279;; (*ITAG) Solyc01g068580.2.1 (e_value=2e-140) genomic_reference:SL2.40ch01 gene_region:70178637-70187719 transcript_region:SL2.40ch01:70178637..70187719+ go_terms:GO:0005515 functional_description:"C9orf78 (AHRD V1 **-- C3KGZ0_ANOFI); contains Interpro domain(s) IPR010756 Hepatocellular carcinoma-associated antigen 59 "; GO:0005515 NbS00029326g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|329; (*GB) gi|224136548|ref|XP_002322357.1| (e_value=3e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12920.1 (e_value=5e-74) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr3:4122127-4123323 REVERSE LENGTH=335;; (*ITAG) Solyc02g069180.2.1 (e_value=1e-144) genomic_reference:SL2.40ch02 gene_region:33713714-33716151 transcript_region:SL2.40ch02:33713714..33716151+ functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY)"; NbS00036945g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|80; (*GB) gi|15810881|gb|AAL08686.1|AF307055_1 (e_value=1e-25) Adh2 [Verbascum thapsus];; (*ITAG) Solyc11g071290.1.1 (e_value=5e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51903072-51909699 transcript_region:SL2.40ch11:51903072..51909699+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase (AHRD V1 **** Q43169_SOLTU); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00010033g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|3|0|127; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-29) hypothetical protein [Nicotiana tabacum]; NbS00046256g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|132 NbS00046256g0006.1 protein AED:0.03 eAED:0.03 QI:15|1|0.5|1|1|1|2|0|178; (*GB) gi|225434875|ref|XP_002283174.1| (e_value=5e-23) PREDICTED: uncharacterized protein LOC100248460 [Vitis vinifera];; (*TAIR) AT2G29180.1 (e_value=6e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543081-12543702 FORWARD LENGTH=169;; (*ITAG) Solyc05g009300.1.1 (e_value=3e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:3436757-3437239 transcript_region:SL2.40ch05:3436757..3437239+ functional_description:"80C09_19 related (AHRD V1 *-*- Q2HS36_MEDTR)"; NbS00046256g0005.1 protein AED:0.16 eAED:0.16 QI:636|0.75|0.8|1|0.5|0.4|5|326|191; (*GB) gi|223975293|gb|ACN31834.1| (e_value=2e-34) unknown [Zea mays];; (*TAIR) AT4G23470.3 (e_value=7e-36) | Symbols: | PLAC8 family protein | chr4:12249289-12251079 FORWARD LENGTH=233;; (*ITAG) Solyc12g056210.1.1 (e_value=9e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47526767-47531237 transcript_region:SL2.40ch12:47526767..47531237- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00029892g0006.1 protein AED:0.26 eAED:0.29 QI:0|0.33|0|1|0|0.5|4|0|265; (*GB) gi|359479021|ref|XP_003632204.1| (e_value=1e-107) PREDICTED: laccase-17-like [Vitis vinifera];; (*SWP) sp|Q0DHL2|LAC12_ORYSJ (e_value=9e-94) Laccase-12/13 OS=Oryza sativa subsp. japonica GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=8e-95) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=4e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00029892g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|224128342|ref|XP_002329138.1| (e_value=8e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=3e-28) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=2e-29) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00029892g0005.1 protein AED:0.43 eAED:0.78 QI:0|0|0|1|0|0|2|0|72; (*TAIR) AT5G60020.1 (e_value=5e-15) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011970.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00034682g0006.1 protein AED:0.05 eAED:0.18 QI:48|1|0.33|1|0|0|3|0|97; (*GB) gi|359479989|ref|XP_002273891.2| (e_value=1e-27) PREDICTED: uncharacterized protein LOC100255449 [Vitis vinifera];; (*TAIR) AT4G01790.1 (e_value=1e-25) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:769868-770728 FORWARD LENGTH=167;; (*ITAG) Solyc01g080830.2.1 (e_value=7e-55) genomic_reference:SL2.40ch01 gene_region:72635275-72637052 transcript_region:SL2.40ch01:72635275..72637052+ go_terms:GO:0004526 functional_description:"cDNA clone J023109D15 full insert sequence (AHRD V1 ***- B7EQP2_ORYSJ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0004526 NbS00034682g0007.1 protein AED:0.26 eAED:0.26 QI:204|0.9|0.90|1|0.8|0.95|21|274|1019; (*GB) gi|359479991|ref|XP_002273928.2| (e_value=0.0) PREDICTED: protein translocase subunit SecA, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SYI0|SECA1_ARATH (e_value=0.0) Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana GN=SECA1 PE=1 SV=2;; (*TAIR) AT4G01800.1 (e_value=0.0) | Symbols: AGY1, AtcpSecA, SECA1 | Albino or Glassy Yellow 1 | chr4:770926-776131 REVERSE LENGTH=1022;; (*ITAG) Solyc01g080840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72636857-72653421 transcript_region:SL2.40ch01:72636857..72653421- go_terms:GO:0006886,GO:0016020 functional_description:"Protein translocase subunit secA (AHRD V1 ***- B9I9A8_POPTR); contains Interpro domain(s) IPR000185 SecA protein "; GO:0006886,GO:0016020 NbS00005536g0007.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0|1|0.5|0.33|3|0|875; (*GB) gi|225447446|ref|XP_002266343.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249524 [Vitis vinifera];; (*SWP) sp|Q8LPQ9|FPA_ARATH (e_value=6e-37) Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2;; (*TAIR) AT4G12640.1 (e_value=6e-139) | Symbols: | RNA recognition motif (RRM)-containing protein | chr4:7462697-7467630 FORWARD LENGTH=823;; (*ITAG) Solyc12g011050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3912855-3927074 transcript_region:SL2.40ch12:3912855..3927074+ go_terms:GO:0003676,GO:0000166 functional_description:"MKIAA4257 protein (Fragment) (AHRD V1 *--- Q571M7_MOUSE); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal "; GO:0003676,GO:0000166 NbS00000038g0008.1 protein AED:0.23 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|615; (*GB) gi|359473103|ref|XP_002282444.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g67900-like [Vitis vinifera];; (*SWP) sp|Q9C9V6|Y1790_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1;; (*TAIR) AT1G67900.3 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:25467737-25469888 FORWARD LENGTH=631;; (*ITAG) Solyc05g013570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6847219-6849746 transcript_region:SL2.40ch05:6847219..6849746- go_terms:GO:0005515,GO:0009416 functional_description:"AT1G67900-like protein (Fragment) (AHRD V1 *--- D6PNV0_9BRAS); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00000038g0009.1 protein AED:0.37 eAED:0.48 QI:22|1|0.5|1|0|0.5|2|0|89; (*GB) gi|224102423|ref|XP_002312672.1| (e_value=6e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67910.2 (e_value=5e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). | chr1:25471534-25471809 REVERSE LENGTH=91;; (*ITAG) Solyc05g013560.2.1 (e_value=1e-36) genomic_reference:SL2.40ch05 gene_region:6839571-6840648 transcript_region:SL2.40ch05:6839571..6840648+ functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 *-*- Q9FKU6_ARATH)"; NbS00006046g0010.1 protein AED:0.02 eAED:0.02 QI:124|1|1|1|1|1|2|84|386; (*GB) gi|255546799|ref|XP_002514458.1| (e_value=1e-21) small heat-shock protein, putative [Ricinus communis];; (*TAIR) AT5G04890.1 (e_value=1e-15) | Symbols: RTM2 | HSP20-like chaperones superfamily protein | chr5:1427217-1428390 FORWARD LENGTH=366;; (*ITAG) Solyc01g096960.2.1 (e_value=1e-138) genomic_reference:SL2.40ch01 gene_region:79722720-79724375 transcript_region:SL2.40ch01:79722720..79724375- functional_description:"22.7 kDa class IV heat shock protein (AHRD V1 *--- HSP41_PEA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00006046g0009.1 protein AED:0.18 eAED:0.19 QI:264|0.83|0.42|1|0.66|0.57|7|540|464; (*GB) gi|297734627|emb|CBI16678.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BX09|RBBP5_MOUSE (e_value=1e-62) Retinoblastoma-binding protein 5 OS=Mus musculus GN=Rbbp5 PE=1 SV=2;; (*TAIR) AT3G21060.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:7377822-7379942 FORWARD LENGTH=547;; (*ITAG) Solyc01g096950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79714818-79722380 transcript_region:SL2.40ch01:79714818..79722380+ go_terms:GO:0005515 functional_description:"Retinoblastoma-binding protein-like (AHRD V1 **-* Q9LJC6_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515 NbS00006046g0011.1 protein AED:0.27 eAED:0.27 QI:237|0.75|0.4|1|0.75|0.8|5|0|484; (*GB) gi|225459441|ref|XP_002285827.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 9A isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=8e-159) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.1 (e_value=6e-160) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520;; (*ITAG) Solyc01g096990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00023447g0007.1 protein AED:0.19 eAED:0.19 QI:263|1|1|1|1|1|4|369|421; (*GB) gi|147832851|emb|CAN63961.1| (e_value=2e-107) hypothetical protein VITISV_028424 [Vitis vinifera];; (*SWP) sp|Q94F58|NAC89_ARATH (e_value=4e-78) NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1;; (*TAIR) AT3G44290.1 (e_value=5e-81) | Symbols: anac060, NAC060 | NAC domain containing protein 60 | chr3:15972909-15975019 REVERSE LENGTH=335;; (*ITAG) Solyc11g068750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50465592-50470925 transcript_region:SL2.40ch11:50465592..50470925+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HQ28_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00023485g0006.1 protein AED:0.13 eAED:0.13 QI:93|1|1|1|0.76|0.72|18|333|642; (*GB) gi|296083316|emb|CBI22952.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LRZ3|PUM24_ARATH (e_value=0.0) Pumilio homolog 24 OS=Arabidopsis thaliana GN=APUM24 PE=2 SV=1;; (*TAIR) AT3G16810.1 (e_value=0.0) | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641;; (*ITAG) Solyc01g065580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64325048-64330129 transcript_region:SL2.40ch01:64325048..64330129- go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein KIAA0020 (AHRD V1 ***- B5X3V8_SALSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00023485g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.2|1|1|5|0|260; (*GB) gi|224130368|ref|XP_002328591.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G06778.1 (e_value=2e-32) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:2140249-2141437 REVERSE LENGTH=229;; (*ITAG) Solyc01g065570.2.1 (e_value=2e-90) genomic_reference:SL2.40ch01 gene_region:64323619-64325092 transcript_region:SL2.40ch01:64323619..64325092+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00010534g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|396; (*GB) gi|224128366|ref|XP_002329144.1| (e_value=8e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=1e-99) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT5G53750.1 (e_value=1e-101) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc10g006920.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1351502-1353880 transcript_region:SL2.40ch10:1351502..1353880+ functional_description:"CBS domain containing protein (AHRD V1 **-- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00058611g0010.1 protein AED:0.03 eAED:0.03 QI:137|1|1|1|0.75|0.6|5|428|648; (*GB) gi|298569788|gb|ADI87422.1| (e_value=0.0) fructokinase-like protein 2 [Nicotiana benthamiana];; (*SWP) sp|Q42896|SCRK2_SOLLC (e_value=3e-42) Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2;; (*TAIR) AT1G69200.1 (e_value=0.0) | Symbols: FLN2 | fructokinase-like 2 | chr1:26016018-26018365 FORWARD LENGTH=616;; (*ITAG) Solyc05g012100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5311181-5315705 transcript_region:SL2.40ch05:5311181..5315705+ functional_description:"Fructokinase-like protein 2 (AHRD V1 **-- D9IWP0_NICBE); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00058611g0011.1 protein AED:0.34 eAED:0.34 QI:196|1|1|1|1|1|3|260|133; (*GB) gi|224108870|ref|XP_002314997.1| (e_value=8e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|O48845|CYB52_ARATH (e_value=1e-34) Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1;; (*TAIR) AT1G26340.1 (e_value=5e-57) | Symbols: B5 #6, ATCB5-A, CB5-A | cytochrome B5 isoform A | chr1:9113992-9114755 FORWARD LENGTH=135;; (*ITAG) Solyc05g012080.2.1 (e_value=2e-74) genomic_reference:SL2.40ch05 gene_region:5304880-5308084 transcript_region:SL2.40ch05:5304880..5308084+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** Q9FDW8_ARATH); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00058611g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.33|1|1|3|0|489; (*GB) gi|238684536|gb|ACR54435.1| (e_value=0.0) dihydropterin pyrophosphokinase-dihydropteroate synthase [Solanum lycopersicum];; (*SWP) sp|P29251|FOL1_PNECA (e_value=2e-94) Folic acid synthesis protein fol1 OS=Pneumocystis carinii GN=fol1 PE=1 SV=1;; (*TAIR) AT4G30000.1 (e_value=0.0) | Symbols: | Dihydropterin pyrophosphokinase / Dihydropteroate synthase | chr4:14670524-14672397 REVERSE LENGTH=554;; (*ITAG) Solyc05g012090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5308231-5310864 transcript_region:SL2.40ch05:5308231..5310864- go_terms:GO:0004156,GO:0003848 functional_description:"Dihydropteroate synthase (AHRD V1 **** D7KWZ1_ARALY); contains Interpro domain(s) IPR006390 Dihydropteroate synthase "; GO:0004156,GO:0003848 NbS00058611g0007.1 protein AED:0.21 eAED:0.27 QI:1862|0|0.5|1|0|0.5|2|0|109; (*GB) gi|225423434|ref|XP_002264324.1| (e_value=3e-58) PREDICTED: probable 6-phosphogluconolactonase 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6Z4H0|6PGL2_ORYSJ (e_value=3e-49) Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=1e-48) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc05g012110.2.1 (e_value=5e-68) genomic_reference:SL2.40ch05 gene_region:5316351-5320016 transcript_region:SL2.40ch05:5316351..5320016- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** Q156I4_MANIN); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00036861g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|3021527|emb|CAA06242.1| (e_value=1e-123) P18 protein [Nicotiana alata]; NbS00053880g0005.1 protein AED:0.07 eAED:0.07 QI:187|1|1|1|1|1|5|300|198; (*GB) gi|297733851|emb|CBI15098.3| (e_value=2e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZWS6|ARR6_ARATH (e_value=2e-72) Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2;; (*TAIR) AT5G62920.1 (e_value=2e-73) | Symbols: ARR6 | response regulator 6 | chr5:25252745-25254158 REVERSE LENGTH=186;; (*ITAG) Solyc03g113720.2.1 (e_value=9e-108) genomic_reference:SL2.40ch03 gene_region:57836552-57838432 transcript_region:SL2.40ch03:57836552..57838432- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00004986g0001.1 protein AED:0.10 eAED:0.23 QI:111|1|0.5|1|0|0|2|340|290; (*GB) gi|225444776|ref|XP_002279848.1| (e_value=8e-90) PREDICTED: uncharacterized protein LOC100249118 [Vitis vinifera];; (*TAIR) AT2G31670.1 (e_value=4e-80) | Symbols: | Stress responsive alpha-beta barrel domain protein | chr2:13472699-13473490 REVERSE LENGTH=263;; (*ITAG) Solyc07g041490.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:50632738-50633541 transcript_region:SL2.40ch07:50632738..50633541+ functional_description:"Stress responsive alpha-beta barrel domain protein (AHRD V1 *-*- C7QRA6_CYAP0); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00004986g0003.1 protein AED:0.23 eAED:0.26 QI:0|0|0|1|1|1|2|0|99; (*ITAG) Solyc07g063790.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63364184-63364768 transcript_region:SL2.40ch07:63364184..63364768+ functional_description:"Unknown Protein (AHRD V1)"; NbC25653021g0002.1 protein AED:0.32 eAED:0.81 QI:0|0|0|0.5|1|1|2|0|79; (*GB) gi|356497520|ref|XP_003517608.1| (e_value=4e-22) PREDICTED: uncharacterized protein LOC100779830 [Glycine max];; (*TAIR) AT1G76630.2 (e_value=3e-20) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1168;; (*ITAG) Solyc04g082980.1.1 (e_value=3e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00015523g0008.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0.2|0.6|0.5|0.6|5|0|159; (*GB) gi|225430537|ref|XP_002285578.1| (e_value=2e-46) PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis vinifera];; (*SWP) sp|Q38859|RPB11_ARATH (e_value=6e-45) DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1;; (*TAIR) AT3G52090.1 (e_value=4e-46) | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116;; (*ITAG) Solyc11g069910.1.1 (e_value=8e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51605382-51607881 transcript_region:SL2.40ch11:51605382..51607881+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit J (AHRD V1 ***- B4FJS1_MAIZE); contains Interpro domain(s) IPR009025 DNA-directed RNA polymerase, RBP11-like "; GO:0006350 NbS00020731g0006.1 protein AED:0.29 eAED:0.29 QI:217|0.75|0.6|1|1|1|5|376|232; (*GB) gi|225430378|ref|XP_002285330.1| (e_value=2e-123) PREDICTED: Golgi SNARE 11 protein [Vitis vinifera];; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=6e-114) Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1;; (*TAIR) AT1G15880.1 (e_value=5e-115) | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458718-5460089 REVERSE LENGTH=223;; (*ITAG) Solyc06g065740.2.1 (e_value=2e-144) genomic_reference:SL2.40ch06 gene_region:37599549-37605829 transcript_region:SL2.40ch06:37599549..37605829+ go_terms:GO:0000149 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 ***- B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149 NbS00009246g0006.1 protein AED:0.04 eAED:0.06 QI:0|0.33|0.5|1|1|1|4|0|296; (*GB) gi|3912951|sp|O49998.1|1433F_TOBAC (e_value=2e-174) RecName: Full=14-3-3-like protein F;; (*SWP) sp|O49998|1433F_TOBAC (e_value=6e-176) 14-3-3-like protein F OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G35160.2 (e_value=7e-156) | Symbols: GF14 PHI | GF14 protein phi chain | chr1:12867264-12868514 FORWARD LENGTH=295;; (*ITAG) Solyc11g010200.1.1 (e_value=1e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3274709-3275901 transcript_region:SL2.40ch11:3274709..3275901+ go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00018120g0007.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0|1|1|1|3|0|64; (*GB) gi|45433317|emb|CAD27462.1| (e_value=1e-30) nucleosome assembly protein 1-like protein 3 [Nicotiana tabacum];; (*TAIR) AT5G56950.1 (e_value=1e-23) | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembly protein 1;3 | chr5:23032618-23035299 FORWARD LENGTH=374;; (*ITAG) Solyc12g008940.1.1 (e_value=3e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00018120g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|354; (*GB) gi|388252715|gb|AFK24440.1| (e_value=1e-143) HSFA9 [Coffea arabica];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=2e-81) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=2e-82) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc07g040680.2.1 (e_value=3e-160) genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00020885g0013.1 protein AED:0.02 eAED:0.02 QI:627|1|1|1|1|1|2|334|305; (*GB) gi|224137652|ref|XP_002327179.1| (e_value=2e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=2e-76) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=7e-79) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc04g074110.2.1 (e_value=8e-169) genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00020885g0012.1 protein AED:0.25 eAED:0.25 QI:274|0.5|0.33|0.66|1|1|3|726|65 NbS00020885g0017.1 protein AED:0.10 eAED:0.10 QI:564|0.77|0.84|1|0.77|0.89|19|376|917; (*GB) gi|359492851|ref|XP_003634472.1| (e_value=0.0) PREDICTED: synaptonemal complex protein 2-like [Vitis vinifera];; (*SWP) sp|Q9LME2|SYCP1_ARATH (e_value=2e-165) Synaptonemal complex protein 1 OS=Arabidopsis thaliana GN=ZYP1A PE=2 SV=1;; (*TAIR) AT1G22260.1 (e_value=1e-166) | Symbols: ZYP1a, ZYP1 | Myosin heavy chain-related protein | chr1:7860160-7865142 REVERSE LENGTH=871;; (*ITAG) Solyc04g074120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57716347-57724315 transcript_region:SL2.40ch04:57716347..57724315- go_terms:GO:0005515 functional_description:"Synaptonemal complex protein 1 (AHRD V1 ***- SYCP1_ARATH)"; GO:0005515 NbS00020885g0019.1 protein AED:0.22 eAED:0.22 QI:73|0.7|0.54|1|0.9|1|11|0|631; (*GB) gi|225459366|ref|XP_002285809.1| (e_value=0.0) PREDICTED: tRNA modification GTPase MnmE [Vitis vinifera];; (*SWP) sp|Q8KPU2|MNME_SYNE7 (e_value=7e-141) tRNA modification GTPase MnmE OS=Synechococcus elongatus (strain PCC 7942) GN=mnmE PE=3 SV=3;; (*TAIR) AT1G78010.1 (e_value=0.0) | Symbols: | tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560;; (*ITAG) Solyc04g072770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57328213-57335638 transcript_region:SL2.40ch04:57328213..57335638+ go_terms:GO:0005515 functional_description:"tRNA modification GTPase mnmE (AHRD V1 ***- B1WVF4_CYAA5); contains Interpro domain(s) IPR004520 tRNA modification GTPase TrmE "; GO:0005515 NbS00020885g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.81|0.41|1|1|1|12|0|568; (*GB) gi|350537845|ref|NP_001234569.1| (e_value=0.0) sulfate transporter 2 [Solanum lycopersicum];; (*SWP) sp|Q9FEP7|SUT13_ARATH (e_value=0.0) Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=0.0) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc04g072760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57323894-57327409 transcript_region:SL2.40ch04:57323894..57327409+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00017856g0003.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0|1|0.5|0.33|3|0|118; (*GB) gi|296081240|emb|CBI17984.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=2e-33) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=1e-34) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc00g289230.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21012487-21013976 transcript_region:SL2.40ch00:21012487..21013976- go_terms:GO:0004672 functional_description:"Receptor protein kinase (AHRD V1 **** Q40096_IPOTF); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00031868g0014.1 protein AED:0.10 eAED:0.16 QI:20|1|0.33|1|1|0.66|3|0|204; (*GB) gi|255577930|ref|XP_002529837.1| (e_value=1e-17) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20430.1 (e_value=1e-12) | Symbols: RIC6 | ROP-interactive CRIB motif-containing protein 6 | chr2:8808667-8809781 REVERSE LENGTH=212;; (*ITAG) Solyc06g083800.2.1 (e_value=8e-47) genomic_reference:SL2.40ch06 gene_region:45404734-45406644 transcript_region:SL2.40ch06:45404734..45406644- functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00031868g0005.1 protein AED:0.50 eAED:0.50 QI:0|0.66|0.25|0.75|1|1|4|0|126; (*GB) gi|226493243|ref|NP_001149896.1| (e_value=3e-75) pleckstrin homology domain containing, family A [Zea mays];; (*TAIR) AT2G33470.2 (e_value=3e-69) | Symbols: GLTP1 | glycolipid transfer protein 1 | chr2:14176599-14177950 REVERSE LENGTH=202;; (*ITAG) Solyc06g083810.2.1 (e_value=6e-84) genomic_reference:SL2.40ch06 gene_region:45406955-45411773 transcript_region:SL2.40ch06:45406955..45411773- go_terms:GO:0051861,GO:0017089 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-* C1C1L0_9MAXI); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0051861,GO:0017089 NbS00031868g0009.1 protein AED:0.23 eAED:0.24 QI:327|0.81|0.83|1|1|1|12|223|466; (*GB) gi|83284007|gb|ABC01911.1| (e_value=0.0) succinyl CoA ligase beta subunit-like protein [Solanum tuberosum];; (*SWP) sp|Q84LB6|SUCB_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G20420.1 (e_value=0.0) | Symbols: | ATP citrate lyase (ACL) family protein | chr2:8805574-8807858 FORWARD LENGTH=421;; (*ITAG) Solyc06g083790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45398741-45407021 transcript_region:SL2.40ch06:45398741..45407021+ go_terms:GO:0004775 functional_description:"Succinyl-CoA ligase (AHRD V1 **** B4D5D9_9BACT); contains Interpro domain(s) IPR005809 Succinyl-CoA synthetase, beta subunit "; GO:0004775 NbS00006692g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|121; (*ITAG) Solyc00g005870.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3435133-3436360 transcript_region:SL2.40ch00:3435133..3436360- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00006692g0006.1 protein AED:0.36 eAED:0.44 QI:14|1|0.87|1|0.85|0.75|8|341|356; (*GB) gi|224053781|ref|XP_002297976.1| (e_value=1e-120) inner membrane protein [Populus trichocarpa];; (*SWP) sp|Q42191|OXA1_ARATH (e_value=2e-104) Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2;; (*TAIR) AT5G62050.1 (e_value=2e-105) | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast oxidase assembly 1 (OXA1) | chr5:24924062-24926758 REVERSE LENGTH=429;; (*ITAG) Solyc08g008320.2.1 (e_value=1e-128) genomic_reference:SL2.40ch08 gene_region:2747425-2756377 transcript_region:SL2.40ch08:2747425..2756377- go_terms:GO:0015450 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- OXAA_WOLSU); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0015450 NbS00050306g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.5|1|0.66|0.6|10|0|564; (*GB) gi|356522474|ref|XP_003529871.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=3e-166) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=0.0) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc12g044890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45693139-45696688 transcript_region:SL2.40ch12:45693139..45696688- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00050306g0007.1 protein AED:0.28 eAED:0.26 QI:0|0.52|0.5|0.94|0.70|0.72|18|1439|443; (*GB) gi|350539595|ref|NP_001234465.1| (e_value=0.0) beta-galactosidase precursor [Solanum lycopersicum];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g044880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45685680-45691694 transcript_region:SL2.40ch12:45685680..45691694+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q546T5_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00006777g0113.1 protein AED:0.09 eAED:0.13 QI:0|0.25|0.2|1|0|0|5|104|426 NbS00006777g0109.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0|1|0|0|4|0|162 NbS00006777g0111.1 protein AED:0.33 eAED:0.53 QI:0|0|0|1|0|0|2|0|102 NbS00006777g0110.1 protein AED:0.41 eAED:0.66 QI:0|0|0|1|0|0|2|0|75 NbS00006777g0112.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|60 NbS00021442g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|549; (*GB) gi|224118316|ref|XP_002331452.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28120.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:11985934-11987667 FORWARD LENGTH=577;; (*ITAG) Solyc11g066330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49161079-49162746 transcript_region:SL2.40ch11:49161079..49162746+ functional_description:"Nodulin family protein (AHRD V1 ***- D7LIF1_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00031724g0003.1 protein AED:0.74 eAED:0.83 QI:0|0|0|0.66|1|1|3|0|65 NbS00010974g0012.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|138; (*GB) gi|61658204|gb|AAX49392.1| (e_value=1e-46) OLE-4 [Coffea canephora];; (*SWP) sp|Q42980|OLEO1_ORYSJ (e_value=6e-29) Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=OLE16 PE=2 SV=2;; (*TAIR) AT5G51210.1 (e_value=2e-26) | Symbols: OLEO3 | oleosin3 | chr5:20820171-20820706 FORWARD LENGTH=141;; (*ITAG) Solyc06g060840.1.1 (e_value=5e-60) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35259037-35259441 transcript_region:SL2.40ch06:35259037..35259441+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q2TM28_COFCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00010974g0019.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0.25|0.4|5|0|403; (*GB) gi|359473878|ref|XP_003631372.1| (e_value=2e-127) PREDICTED: gibberellin 20 oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q39111|GAOX2_ARATH (e_value=2e-44) Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1;; (*TAIR) AT5G51810.1 (e_value=2e-45) | Symbols: GA20OX2, AT2353, ATGA20OX2 | gibberellin 20 oxidase 2 | chr5:21055389-21056746 REVERSE LENGTH=378;; (*ITAG) Solyc12g013780.1.1 (e_value=1e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4584783-4587211 transcript_region:SL2.40ch12:4584783..4587211- go_terms:GO:0016491 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 ***- A9LY20_SELML); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00010974g0018.1 protein AED:0.50 eAED:0.51 QI:0|0|0|0.57|0.33|0.42|7|0|389; (*GB) gi|147773656|emb|CAN63176.1| (e_value=3e-27) hypothetical protein VITISV_029947 [Vitis vinifera];; (*TAIR) AT4G14920.1 (e_value=2e-14) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr4:8531157-8535842 REVERSE LENGTH=1138;; (*ITAG) Solyc08g078120.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59120677-59124643 transcript_region:SL2.40ch08:59120677..59124643- go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00010974g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|493; (*GB) gi|255557699|ref|XP_002519879.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|P37034|Y1691_LEGPH (e_value=6e-16) Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2;; (*TAIR) AT1G31830.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc08g075710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57004882-57011338 transcript_region:SL2.40ch08:57004882..57011338+ go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME2_HELPE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00010974g0016.1 protein AED:0.26 eAED:0.26 QI:187|0.85|0.75|1|0.57|0.75|8|448|318; (*GB) gi|255583179|ref|XP_002532355.1| (e_value=3e-132) Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q9JLZ3|AUHM_MOUSE (e_value=6e-70) Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1;; (*TAIR) AT4G16800.1 (e_value=2e-107) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:9454931-9457000 REVERSE LENGTH=301;; (*ITAG) Solyc08g078130.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:59130801-59134936 transcript_region:SL2.40ch08:59130801..59134936+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 *-*- FADJ_VIBCH); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00010974g0014.1 protein AED:0.46 eAED:0.46 QI:0|0.83|0.57|1|1|0.85|7|0|158; (*GB) gi|255583183|ref|XP_002532357.1| (e_value=1e-77) Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis];; (*SWP) sp|Q2TBG8|UCHL3_BOVIN (e_value=1e-34) Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1;; (*TAIR) AT4G17510.1 (e_value=1e-70) | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234;; (*ITAG) Solyc08g078140.2.1 (e_value=6e-89) genomic_reference:SL2.40ch08 gene_region:59135352-59141559 transcript_region:SL2.40ch08:59135352..59141559+ go_terms:GO:0004843,GO:0004221 functional_description:"Ubiquitin carboxyl-terminal hydrolase isozyme L3 (AHRD V1 **** B6T8R6_MAIZE); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0004843,GO:0004221 NbS00010974g0022.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|0.5|2|0|75; (*GB) gi|147819914|emb|CAN67293.1| (e_value=6e-22) hypothetical protein VITISV_040599 [Vitis vinifera];; (*SWP) sp|Q9JLZ3|AUHM_MOUSE (e_value=2e-15) Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1;; (*TAIR) AT4G16800.1 (e_value=5e-19) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:9454931-9457000 REVERSE LENGTH=301;; (*ITAG) Solyc08g078130.2.1 (e_value=3e-29) genomic_reference:SL2.40ch08 gene_region:59130801-59134936 transcript_region:SL2.40ch08:59130801..59134936+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 *-*- FADJ_VIBCH); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00037065g0009.1 protein AED:0.16 eAED:0.22 QI:227|0.33|0.75|1|0|0|4|316|133; (*GB) gi|225453428|ref|XP_002275089.1| (e_value=7e-69) PREDICTED: actin-related protein 2/3 complex subunit 5 isoform 1 [Vitis vinifera];; (*TAIR) AT4G01710.1 (e_value=1e-65) | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subunit (p16-Arc) | chr4:735776-736450 FORWARD LENGTH=132;; (*ITAG) Solyc01g090450.2.1 (e_value=1e-73) genomic_reference:SL2.40ch01 gene_region:75891415-75896855 transcript_region:SL2.40ch01:75891415..75896855+ go_terms:GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 5 (AHRD V1 **** A5AQ06_VITVI); contains Interpro domain(s) IPR006789 ARP2/3 complex 16 kDa subunit (p16-Arc) "; GO:0051015 NbS00037065g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|849; (*GB) gi|147843896|emb|CAN81597.1| (e_value=1e-35) hypothetical protein VITISV_039396 [Vitis vinifera];; (*TAIR) AT3G60380.1 (e_value=9e-15) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink). | chr3:22316913-22319144 REVERSE LENGTH=743;; (*ITAG) Solyc01g090440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75887262-75890317 transcript_region:SL2.40ch01:75887262..75890317- functional_description:"Unknown Protein (AHRD V1)"; NbS00037065g0006.1 protein AED:0.07 eAED:0.07 QI:433|1|1|1|1|1|4|337|295; (*GB) gi|350539649|ref|NP_001234233.1| (e_value=1e-122) HD-ZIP protein [Solanum lycopersicum];; (*SWP) sp|P46602|HAT3_ARATH (e_value=2e-74) Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2;; (*TAIR) AT3G60390.1 (e_value=2e-75) | Symbols: HAT3 | homeobox-leucine zipper protein 3 | chr3:22320788-22322370 REVERSE LENGTH=315;; (*ITAG) Solyc01g090460.2.1 (e_value=2e-125) genomic_reference:SL2.40ch01 gene_region:75898047-75900023 transcript_region:SL2.40ch01:75898047..75900023- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q39862_SOYBN); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0043565 NbS00004726g0007.1 protein AED:0.00 eAED:0.00 QI:133|1|1|1|0|0|2|136|74; (*GB) gi|54310818|gb|AAV33646.1| (e_value=8e-16) phytosulfokine precursor [Avicennia marina];; (*ITAG) Solyc04g077580.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:60134451-60135144 transcript_region:SL2.40ch04:60134451..60135144+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00004726g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.72|0.5|0.91|1|1|12|0|560; (*GB) gi|297735097|emb|CBI17459.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P24859|SEC14_KLULA (e_value=1e-48) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G21540.3 (e_value=2e-178) | Symbols: SFH3 | SEC14-like 3 | chr2:9220831-9223737 REVERSE LENGTH=542;; (*ITAG) Solyc11g040280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30444980-30447896 transcript_region:SL2.40ch11:30444980..30447896- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T027_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00003727g0003.1 protein AED:0.04 eAED:0.04 QI:144|1|1|1|0.55|0.4|10|322|1159; (*GB) gi|225464529|ref|XP_002272399.1| (e_value=0.0) PREDICTED: methyltransferase-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q94AI4|METL1_ARATH (e_value=0.0) Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=1 SV=1;; (*TAIR) AT4G09980.1 (e_value=0.0) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963;; (*ITAG) Solyc05g056210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64715534-64721779 transcript_region:SL2.40ch05:64715534..64721779- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00006868g0112.1 protein AED:0.07 eAED:0.14 QI:0|0|0|1|0|0.33|3|1014|203 NbS00006868g0110.1 protein AED:0.38 eAED:0.38 QI:125|0.66|0.75|1|0.66|0.25|4|0|120 NbS00016063g0002.1 protein AED:0.26 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|225454342|ref|XP_002275850.1| (e_value=4e-75) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=9e-52) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=3e-44) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010810.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3828764-3830176 transcript_region:SL2.40ch11:3828764..3830176+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00059774g0004.1 protein AED:0.14 eAED:0.14 QI:301|0.75|0.8|1|0.75|0.8|5|0|465; (*GB) gi|255550387|ref|XP_002516244.1| (e_value=0.0) polygalacturonase, putative [Ricinus communis];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=4e-102) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G42950.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:15015383-15017800 FORWARD LENGTH=484;; (*ITAG) Solyc12g009210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2490735-2496842 transcript_region:SL2.40ch12:2490735..2496842+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00017420g0004.1 protein AED:0.10 eAED:0.10 QI:358|1|0.75|1|0.85|0.75|8|0|445; (*GB) gi|359473746|ref|XP_002271611.2| (e_value=1e-157) PREDICTED: CTD small phosphatase-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=4e-58) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1;; (*TAIR) AT5G11860.4 (e_value=6e-117) | Symbols: | SCP1-like small phosphatase 5 | chr5:3822024-3823395 REVERSE LENGTH=305;; (*ITAG) Solyc04g045630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:33643321-33649211 transcript_region:SL2.40ch04:33643321..33649211- go_terms:GO:0016791 functional_description:"CTD phosphatase-like protein (AHRD V1 ***- C7EYT4_ORYGL); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00003902g0007.1 protein AED:0.15 eAED:0.18 QI:0|0.5|0|0.8|0.5|0.8|5|0|1100; (*GB) gi|224122142|ref|XP_002330551.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g023950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15283647-15287851 transcript_region:SL2.40ch02:15283647..15287851- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00009262g0013.1 protein AED:0.30 eAED:0.33 QI:0|0.83|0.57|1|0.83|0.85|7|0|456; (*GB) gi|225448765|ref|XP_002281688.1| (e_value=0.0) PREDICTED: macrophage erythroblast attacher [Vitis vinifera];; (*SWP) sp|Q7SXR3|MAEA_DANRE (e_value=1e-84) Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2;; (*TAIR) AT3G55070.1 (e_value=0.0) | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr3:20408377-20410887 FORWARD LENGTH=418;; (*ITAG) Solyc04g010120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3406497-3416361 transcript_region:SL2.40ch04:3406497..3416361- go_terms:GO:0003779 functional_description:"Macrophage erythroblast attacher (AHRD V1 **-- B6TF70_MAIZE); contains Interpro domain(s) IPR013144 Ran binding protein-like, CRA domain "; GO:0003779 NbS00009262g0010.1 protein AED:0.16 eAED:0.34 QI:919|0.4|0.16|0.83|0.8|0.66|6|0|1468; (*GB) gi|356574995|ref|XP_003555628.1| (e_value=5e-100) PREDICTED: uncharacterized protein LOC100803295 [Glycine max];; (*TAIR) AT5G13590.1 (e_value=3e-20) | Symbols: | unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | chr5:4374718-4378647 REVERSE LENGTH=1168;; (*ITAG) Solyc04g010180.2.1 (e_value=6e-70) genomic_reference:SL2.40ch04 gene_region:3502067-3502725 transcript_region:SL2.40ch04:3502067..3502725+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004057g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.75|0.75|0.71|0.62|8|127|1157; (*GB) gi|225451681|ref|XP_002276495.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265170 [Vitis vinifera];; (*TAIR) AT4G20060.1 (e_value=1e-178) | Symbols: EMB1895 | ARM repeat superfamily protein | chr4:10854790-10859330 REVERSE LENGTH=1134;; (*ITAG) Solyc02g064620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30290480-30295579 transcript_region:SL2.40ch02:30290480..30295579+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040014g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|225444639|ref|XP_002276089.1| (e_value=1e-72) PREDICTED: 21 kDa protein-like [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-41) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G20740.1 (e_value=1e-57) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:7025867-7026484 REVERSE LENGTH=205;; (*ITAG) Solyc07g042390.1.1 (e_value=3e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:52852235-52852798 transcript_region:SL2.40ch07:52852235..52852798- go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00032084g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.96|1|0.96|0.96|26|586|1211; (*GB) gi|24461849|gb|AAN62336.1|AF506028_3 (e_value=0.0) CTV.2 [Citrus trifoliata];; (*SWP) sp|Q94AI7|TPL_ARATH (e_value=0.0) Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1;; (*TAIR) AT1G15750.4 (e_value=0.0) | Symbols: WSIP1, TPL | Transducin family protein / WD-40 repeat family protein | chr1:5415086-5420359 REVERSE LENGTH=1131;; (*ITAG) Solyc03g117360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60573693-60584026 transcript_region:SL2.40ch03:60573693..60584026+ go_terms:GO:0042803,GO:0016564 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00032084g0006.1 protein AED:0.37 eAED:0.38 QI:0|0.72|0.5|1|0.90|0.83|12|0|362; (*GB) gi|225463572|ref|XP_002270172.1| (e_value=1e-148) PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera];; (*TAIR) AT1G15740.1 (e_value=2e-129) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc03g117420.2.1 (e_value=6e-168) genomic_reference:SL2.40ch03 gene_region:60607772-60622320 transcript_region:SL2.40ch03:60607772..60622320- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 ***- D7KDI8_ARALY); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515 NbS00025762g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|2981167|gb|AAC06242.1| (e_value=3e-21) late embryogenis abundant protein 5 [Nicotiana tabacum];; (*ITAG) Solyc06g009140.2.1 (e_value=5e-21) genomic_reference:SL2.40ch06 gene_region:3089237-3090327 transcript_region:SL2.40ch06:3089237..3090327+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant 3 family protein (AHRD V1 ***- D7KBC5_ARALY); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 "; GO:0006950 NbS00056415g0005.1 protein AED:0.11 eAED:0.11 QI:151|1|0.66|1|0.5|0.33|3|0|624; (*GB) gi|297739953|emb|CBI30135.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C977|PP135_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1;; (*TAIR) AT1G80270.3 (e_value=0.0) | Symbols: PPR596 | PENTATRICOPEPTIDE REPEAT 596 | chr1:30181265-30183331 FORWARD LENGTH=596;; (*ITAG) Solyc12g020050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:13965325-13970236 transcript_region:SL2.40ch12:13965325..13970236+ go_terms:GO:0003677 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003677 NbS00009930g0006.1 protein AED:0.02 eAED:0.03 QI:377|1|0.5|1|1|1|2|0|1374; (*GB) gi|225437318|ref|XP_002267274.1| (e_value=0.0) PREDICTED: translocase of chloroplast 159, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O81283|TC159_ARATH (e_value=0.0) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=0.0) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc01g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72526370-72529831 transcript_region:SL2.40ch01:72526370..72529831+ go_terms:GO:0004888 functional_description:"Translocase of chloroplast 34 (AHRD V1 *-*- B6TBT7_MAIZE); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0004888 NbS00009930g0007.1 protein AED:0.17 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|100; (*ITAG) Solyc09g009850.2.1 (e_value=5e-25) genomic_reference:SL2.40ch09 gene_region:3342999-3344898 transcript_region:SL2.40ch09:3342999..3344898+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 ***- Q9FLF2_ARATH)"; NbS00031162g0001.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|3|0|286; (*GB) gi|224135419|ref|XP_002327213.1| (e_value=9e-82) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9MAH4|AB10G_ARATH (e_value=1e-70) ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1;; (*TAIR) AT1G53270.1 (e_value=1e-71) | Symbols: | ABC-2 type transporter family protein | chr1:19862878-19864650 FORWARD LENGTH=590;; (*ITAG) Solyc07g053300.1.1 (e_value=4e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59094564-59096390 transcript_region:SL2.40ch07:59094564..59096390- go_terms:GO:0017127 functional_description:"ABC transporter G family member 10 (AHRD V1 **** AB10G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00018539g0007.1 protein AED:0.18 eAED:0.19 QI:469|0.44|0.3|1|0.22|0.2|10|0|1691; (*GB) gi|356570592|ref|XP_003553469.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100787384 [Glycine max];; (*TAIR) AT1G03080.1 (e_value=0.0) | Symbols: | kinase interacting (KIP1-like) family protein | chr1:731794-737332 REVERSE LENGTH=1733;; (*ITAG) Solyc09g065550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59282684-59290446 transcript_region:SL2.40ch09:59282684..59290446+ functional_description:"Kinase interacting family protein (AHRD V1 *--- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00018121g0010.1 protein AED:0.02 eAED:0.02 QI:247|1|1|1|1|1|4|1653|288; (*GB) gi|224111732|ref|XP_002315957.1| (e_value=1e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G25550.1 (e_value=6e-61) | Symbols: | myb-like transcription factor family protein | chr1:8976644-8977942 FORWARD LENGTH=344;; (*ITAG) Solyc05g009720.2.1 (e_value=2e-95) genomic_reference:SL2.40ch05 gene_region:3932222-3934873 transcript_region:SL2.40ch05:3932222..3934873+ go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 **-* Q6Z869_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00006705g0007.1 protein AED:0.00 eAED:0.00 QI:87|1|1|1|1|1|2|242|292; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=6e-95) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=2e-54) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=4e-71) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00006705g0006.1 protein AED:0.00 eAED:0.00 QI:201|1|1|1|0.88|0.8|10|172|215; (*GB) gi|224054853|ref|XP_002298376.1| (e_value=4e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2KIP8|HACD2_BOVIN (e_value=7e-39) 3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2;; (*TAIR) AT5G59770.1 (e_value=3e-73) | Symbols: | Protein-tyrosine phosphatase-like, PTPLA | chr5:24079521-24081195 REVERSE LENGTH=272;; (*ITAG) Solyc11g073130.1.1 (e_value=2e-131) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:53300559-53304883 transcript_region:SL2.40ch11:53300559..53304883+ functional_description:"Protein tyrosine phosphatase 1B (AHRD V1 *-*- D9IVF2_STRIE); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; NbS00002460g0007.1 protein AED:0.04 eAED:0.04 QI:452|1|0.85|1|0.66|0.57|7|311|659; (*GB) gi|255566563|ref|XP_002524266.1| (e_value=6e-19) hypothetical protein RCOM_1520720 [Ricinus communis];; (*TAIR) AT2G31130.1 (e_value=1e-13) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc07g062640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62556707-62560342 transcript_region:SL2.40ch07:62556707..62560342+ functional_description:"Fiber protein Fb32 (AHRD V1 *-*- Q6UA04_GOSBA)"; NbS00002460g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|225461628|ref|XP_002285377.1| (e_value=7e-59) PREDICTED: uncharacterized protein LOC100248626 [Vitis vinifera];; (*SWP) sp|Q22037|ROA1_CAEEL (e_value=2e-18) Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1;; (*TAIR) AT3G15010.2 (e_value=1e-61) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc12g014210.1.1 (e_value=3e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5054503-5055550 transcript_region:SL2.40ch12:5054503..5055550- go_terms:GO:0003688 functional_description:"RNA binding protein (AHRD V1 **-* B6TJJ4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003688 NbS00013729g0003.1 protein AED:0.25 eAED:0.25 QI:193|1|1|1|0.25|0.4|5|1310|176; (*GB) gi|225444738|ref|XP_002278940.1| (e_value=5e-99) PREDICTED: uncharacterized protein LOC100261240 [Vitis vinifera];; (*TAIR) AT2G06010.1 (e_value=4e-98) | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336841-2338391 FORWARD LENGTH=188;; (*ITAG) Solyc07g041780.2.1 (e_value=4e-120) genomic_reference:SL2.40ch07 gene_region:51472575-51474556 transcript_region:SL2.40ch07:51472575..51474556- functional_description:"OBP3-responsive gene 4 (AHRD V1 **-- D7L9C5_ARALY)"; NbS00013729g0004.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|225444740|ref|XP_002278959.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100256155 [Vitis vinifera];; (*TAIR) AT3G42725.1 (e_value=1e-29) | Symbols: | Putative membrane lipoprotein | chr3:14843082-14843690 REVERSE LENGTH=202;; (*ITAG) Solyc07g041770.1.1 (e_value=4e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51468490-51469116 transcript_region:SL2.40ch07:51468490..51469116- functional_description:"Unknown Protein (AHRD V1)"; NbS00013729g0020.1 protein AED:0.27 eAED:0.28 QI:0|0.25|0|0.8|0.75|0.6|5|0|756; (*GB) gi|147801241|emb|CAN72326.1| (e_value=2e-53) hypothetical protein VITISV_041246 [Vitis vinifera];; (*TAIR) AT5G13620.1 (e_value=4e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4385385-4386373 REVERSE LENGTH=301;; (*ITAG) Solyc07g041830.2.1 (e_value=6e-87) genomic_reference:SL2.40ch07 gene_region:51493841-51498122 transcript_region:SL2.40ch07:51493841..51498122+ functional_description:"MTD1 (AHRD V1 *-*- Q9LLM3_MEDTR)"; NbS00013729g0005.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|610; (*GB) gi|225444744|ref|XP_002278128.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Vitis vinifera];; (*SWP) sp|Q3E6Q1|PPR32_ARATH (e_value=7e-142) Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1;; (*TAIR) AT1G11290.1 (e_value=5e-143) | Symbols: CRR22 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=809;; (*ITAG) Solyc04g076330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58837499-58839319 transcript_region:SL2.40ch04:58837499..58839319+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00013729g0030.1 protein AED:0.21 eAED:0.21 QI:0|1|0.6|1|0.75|0.6|5|0|225; (*GB) gi|728626|emb|CAA88492.1| (e_value=1e-134) TAF-2 [Nicotiana tabacum];; (*SWP) sp|Q99142|TAF1_TOBAC (e_value=9e-100) Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1;; (*TAIR) AT2G46270.1 (e_value=2e-38) | Symbols: GBF3 | G-box binding factor 3 | chr2:19000859-19002901 FORWARD LENGTH=382;; (*ITAG) Solyc01g095460.2.1 (e_value=4e-112) genomic_reference:SL2.40ch01 gene_region:78463593-78470070 transcript_region:SL2.40ch01:78463593..78470070+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00013729g0029.1 protein AED:0.13 eAED:0.27 QI:0|0|0|0.5|0.66|0.5|4|0|271; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-23) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00013729g0033.1 protein AED:0.39 eAED:0.42 QI:0|0.66|0.42|0.85|0.66|0.71|7|0|443; (*GB) gi|356556384|ref|XP_003546506.1| (e_value=8e-179) PREDICTED: uncharacterized F-box/LRR-repeat protein C02F5.7-like [Glycine max];; (*SWP) sp|Q6NW95|FXL15_DANRE (e_value=3e-13) F-box/LRR-repeat protein 15 OS=Danio rerio GN=fbxl15 PE=2 SV=2;; (*TAIR) AT2G06040.1 (e_value=3e-159) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762;; (*ITAG) Solyc07g041760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51460855-51465488 transcript_region:SL2.40ch07:51460855..51465488+ functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00013729g0031.1 protein AED:0.59 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|281 NbS00056547g0005.1 protein AED:0.07 eAED:0.07 QI:56|1|1|1|0.33|0.5|4|281|308; (*GB) gi|255587559|ref|XP_002534311.1| (e_value=1e-169) succinate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9FJP9|DHSB3_ARATH (e_value=5e-155) Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2 SV=1;; (*TAIR) AT5G65165.1 (e_value=4e-156) | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | chr5:26034515-26035922 REVERSE LENGTH=309;; (*ITAG) Solyc04g055020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52691322-52693892 transcript_region:SL2.40ch04:52691322..52693892- go_terms:GO:0000104 functional_description:"Iron sulfur subunit of succinate dehydrogenase (AHRD V1 **** Q9XGC8_MAIZE); contains Interpro domain(s) IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein "; GO:0000104 NbS00018870g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|484; (*GB) gi|225450622|ref|XP_002278152.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Vitis vinifera];; (*SWP) sp|O80488|PPR23_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1;; (*TAIR) AT1G09190.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2966263-2967717 REVERSE LENGTH=484;; (*ITAG) Solyc01g100340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82170492-82172089 transcript_region:SL2.40ch01:82170492..82172089+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIZ3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00018870g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0.5|1|3|326|193; (*GB) gi|6563322|gb|AAF17254.1|AF210431_1 (e_value=2e-132) small GTP-binding protein Sar1BNt [Nicotiana tabacum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=2e-127) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=1e-128) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc01g100350.2.1 (e_value=8e-133) genomic_reference:SL2.40ch01 gene_region:82173471-82176296 transcript_region:SL2.40ch01:82173471..82176296- go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00033579g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.83|0.84|1|1|1|13|0|1049; (*GB) gi|6289059|gb|AAF06792.1|AF194022_1 (e_value=0.0) sucrose-6-phosphate synthase A [Nicotiana tabacum];; (*SWP) sp|Q43845|SPSA_SOLTU (e_value=0.0) Probable sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1;; (*TAIR) AT5G20280.1 (e_value=0.0) | Symbols: ATSPS1F, SPS1F | sucrose phosphate synthase 1F | chr5:6844994-6849997 REVERSE LENGTH=1043;; (*ITAG) Solyc07g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2438924-2447625 transcript_region:SL2.40ch07:2438924..2447625+ go_terms:GO:0046524 functional_description:"Sucrose phosphate synthase (AHRD V1 **** Q2HYI0_CUCME); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0046524 NbS00033579g0009.1 protein AED:0.47 eAED:0.93 QI:0|0|0|1|0|0.5|2|0|162; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00014520g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0.5|2|24|126; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00016931g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|0.66|3|234|131; (*GB) gi|198400337|gb|ACH87177.1| (e_value=2e-34) hypothetical protein [Camellia sinensis];; (*TAIR) AT2G17710.1 (e_value=5e-22) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7693856-7694554 FORWARD LENGTH=152;; (*ITAG) Solyc02g083380.2.1 (e_value=9e-44) genomic_reference:SL2.40ch02 gene_region:41387443-41388246 transcript_region:SL2.40ch02:41387443..41388246+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013630g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|644; (*GB) gi|224132414|ref|XP_002328263.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL48|SLY1_ARATH (e_value=0.0) SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1;; (*TAIR) AT2G17980.1 (e_value=0.0) | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627;; (*ITAG) Solyc01g112150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89990409-89993077 transcript_region:SL2.40ch01:89990409..89993077- go_terms:GO:0051535 functional_description:"Sec1-1 syntaxin binding protein (AHRD V1 *--* Q3SEL6_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0051535 NbS00054188g0003.1 protein AED:0.00 eAED:0.00 QI:50|1|1|1|1|1|4|113|143; (*GB) gi|224092862|ref|XP_002309727.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT1G65540.1 (e_value=1e-48) | Symbols: | LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736;; (*ITAG) Solyc12g096810.1.1 (e_value=3e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63912808-63922603 transcript_region:SL2.40ch12:63912808..63922603+ go_terms:GO:0005509 functional_description:"LETM1 and EF-hand domain-containing protein 1, mitochondrial (AHRD V1 *--- LETM1_CHICK); contains Interpro domain(s) IPR011685 LETM1-like "; GO:0005509 NbS00011583g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.69|1|0.66|0.69|13|357|530; (*GB) gi|255544890|ref|XP_002513506.1| (e_value=7e-177) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SYD6|MATE1_ARATH (e_value=2e-160) MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2;; (*TAIR) AT1G51340.2 (e_value=2e-161) | Symbols: | MATE efflux family protein | chr1:19032021-19034681 FORWARD LENGTH=515;; (*ITAG) Solyc01g008420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2504346-2512080 transcript_region:SL2.40ch01:2504346..2512080+ go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00011583g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|425; (*GB) gi|225455537|ref|XP_002267723.1| (e_value=1e-146) PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-100) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=2e-109) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc01g008500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2608681-2614375 transcript_region:SL2.40ch01:2608681..2614375+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00011583g0001.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-29) RNase H family protein [Solanum demissum]; NbS00022274g0005.1 protein AED:0.11 eAED:0.14 QI:188|0.57|0.62|1|0.71|0.62|8|541|194; (*GB) gi|359493793|ref|XP_003634668.1| (e_value=5e-95) PREDICTED: ubiquitin-conjugating enzyme E2 35 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FZ48|UBC36_ARATH (e_value=1e-94) Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1;; (*TAIR) AT1G16890.3 (e_value=3e-97) | Symbols: UBC36 | ubiquitin-conjugating enzyme 36 | chr1:5776550-5778327 REVERSE LENGTH=162;; (*ITAG) Solyc10g007260.2.1 (e_value=8e-96) genomic_reference:SL2.40ch10 gene_region:1673007-1678261 transcript_region:SL2.40ch10:1673007..1678261- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00017505g0001.1 protein AED:0.14 eAED:0.14 QI:242|0.93|0.93|1|0.86|0.87|16|421|650; (*GB) gi|224094759|ref|XP_002310225.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O82663|DHSA1_ARATH (e_value=0.0) Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1;; (*TAIR) AT5G66760.1 (e_value=0.0) | Symbols: SDH1-1 | succinate dehydrogenase 1-1 | chr5:26653776-26657224 FORWARD LENGTH=634;; (*ITAG) Solyc02g085350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42847985-42855215 transcript_region:SL2.40ch02:42847985..42855215- go_terms:GO:0000104 functional_description:"Succinate dehydrogenase flavoprotein subunit (AHRD V1 **** B8CCT7_THAPS); contains Interpro domain(s) IPR011281 Succinate dehydrogenase, flavoprotein subunit "; GO:0000104 NbS00023208g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|436; (*GB) gi|357528936|gb|AET80688.1| (e_value=0.0) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=4e-155) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-64) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc11g066640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49494782-49496101 transcript_region:SL2.40ch11:49494782..49496101+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00023208g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|140; (*ITAG) Solyc04g051850.2.1 (e_value=2e-32) genomic_reference:SL2.40ch04 gene_region:50309231-50311889 transcript_region:SL2.40ch04:50309231..50311889+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018493g0009.1 protein AED:0.00 eAED:0.00 QI:190|1|1|1|1|1|2|341|295; (*GB) gi|356542565|ref|XP_003539737.1| (e_value=5e-80) PREDICTED: dof zinc finger protein DOF2.1-like [Glycine max];; (*SWP) sp|Q8LE43|DOF21_ARATH (e_value=7e-40) Dof zinc finger protein DOF2.1 OS=Arabidopsis thaliana GN=DOF2.1 PE=2 SV=2;; (*TAIR) AT2G28510.1 (e_value=5e-41) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr2:12199383-12200627 REVERSE LENGTH=288;; (*ITAG) Solyc06g075370.2.1 (e_value=1e-115) genomic_reference:SL2.40ch06 gene_region:43174877-43176928 transcript_region:SL2.40ch06:43174877..43176928- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 9 (AHRD V1 *-*- A5HWF8_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00018493g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.94|0.95|1|0.89|0.9|20|411|820; (*GB) gi|225435195|ref|XP_002282009.1| (e_value=0.0) PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera];; (*SWP) sp|Q54E04|VATM_DICDI (e_value=0.0) Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2;; (*TAIR) AT2G28520.1 (e_value=0.0) | Symbols: VHA-A1 | vacuolar proton ATPase A1 | chr2:12210026-12215532 FORWARD LENGTH=817;; (*ITAG) Solyc06g075400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43190253-43198996 transcript_region:SL2.40ch06:43190253..43198996+ go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00001149g0009.1 protein AED:0.16 eAED:0.16 QI:210|0.5|0.4|1|0.75|0.6|5|0|181; (*GB) gi|359492240|ref|XP_002275494.2| (e_value=8e-30) PREDICTED: uncharacterized protein LOC100242110 [Vitis vinifera];; (*TAIR) AT1G19990.1 (e_value=2e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). | chr1:6935327-6936665 FORWARD LENGTH=251;; (*ITAG) Solyc04g081470.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:63024057-63026983 transcript_region:SL2.40ch04:63024057..63026983+ functional_description:"Os05g0596200 protein (Fragment) (AHRD V1 *-*- Q0DFE0_ORYSJ)"; NbS00001149g0006.1 protein AED:0.41 eAED:0.59 QI:381|0|0.33|1|0.5|0.66|3|133|47 NbS00045986g0008.1 protein AED:0.06 eAED:0.06 QI:138|1|1|1|0.85|0.75|8|205|426; (*GB) gi|77999311|gb|ABB17002.1| (e_value=0.0) transaldolase-like protein [Solanum tuberosum];; (*SWP) sp|A9WT40|TAL_RENSM (e_value=4e-90) Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=tal PE=3 SV=1;; (*TAIR) AT5G13420.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr5:4302080-4304212 REVERSE LENGTH=438;; (*ITAG) Solyc00g006800.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:5777117-5780677 transcript_region:SL2.40ch00:5777117..5780677+ go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Transaldolase (AHRD V1 ***- Q9FVH1_SOLLC); contains Interpro domain(s) IPR014634 Transaldolase, bacterial/plant type "; GO:0008152,GO:0005975,GO:0005737 NbS00045986g0010.1 protein AED:0.15 eAED:0.15 QI:567|0.87|0.66|1|0.75|0.77|9|316|64; (*GB) gi|15240623|ref|NP_196845.1| (e_value=2e-35) putative FKBP-type peptidyl-prolyl cis-trans isomerase 7 [Arabidopsis thaliana];; (*SWP) sp|Q9LYR5|FKB19_ARATH (e_value=5e-37) Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1;; (*TAIR) AT5G13410.1 (e_value=4e-38) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr5:4299830-4301706 REVERSE LENGTH=256; NbS00010856g0012.1 protein AED:0.18 eAED:0.18 QI:358|1|1|1|1|1|11|301|291; (*GB) gi|82621150|gb|ABB86263.1| (e_value=2e-175) glutamine cyclotransferase precursor-like [Solanum tuberosum];; (*SWP) sp|Q84WV9|QPCT_ARATH (e_value=4e-115) Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana GN=QCT PE=1 SV=1;; (*TAIR) AT4G25720.1 (e_value=3e-116) | Symbols: ATQC, QC, QCT | glutaminyl cyclase | chr4:13099929-13102470 REVERSE LENGTH=320;; (*ITAG) Solyc03g007920.2.1 (e_value=7e-168) genomic_reference:SL2.40ch03 gene_region:2428262-2432731 transcript_region:SL2.40ch03:2428262..2432731+ go_terms:GO:0016603 functional_description:"Glutamine cyclotransferase-like (AHRD V1 **** Q2V9A5_SOLTU); contains Interpro domain(s) IPR007788 Glutamine cyclotransferase "; GO:0016603 NbS00010856g0016.1 protein AED:0.13 eAED:0.19 QI:0|0.8|0.5|1|0.8|0.83|6|0|424; (*GB) gi|359489654|ref|XP_003633957.1| (e_value=3e-130) PREDICTED: probable serine/threonine-protein kinase At1g01540-like [Vitis vinifera];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=2e-121) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT1G01540.2 (e_value=2e-122) | Symbols: | Protein kinase superfamily protein | chr1:195980-198383 FORWARD LENGTH=472;; (*ITAG) Solyc03g007910.1.1 (e_value=4e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2424391-2426109 transcript_region:SL2.40ch03:2424391..2426109+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor-like serine/threonine kinase (AHRD V1 **** C6FF81_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00010856g0010.1 protein AED:0.34 eAED:0.34 QI:5|0.5|0.8|1|0.75|0.8|5|332|145; (*GB) gi|302143792|emb|CBI22653.3| (e_value=8e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G25720.3 (e_value=2e-18) | Symbols: ATQC, QC, QCT | glutaminyl cyclase | chr4:13099929-13102470 REVERSE LENGTH=300;; (*ITAG) Solyc03g007900.2.1 (e_value=4e-69) genomic_reference:SL2.40ch03 gene_region:2416651-2422800 transcript_region:SL2.40ch03:2416651..2422800+ go_terms:GO:0016603 functional_description:"Glutamine cyclotransferase-like (AHRD V1 **** Q2V9A5_SOLTU); contains Interpro domain(s) IPR007788 Glutamine cyclotransferase "; GO:0016603 NbS00010856g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.6|1|1|1|5|0|451; (*GB) gi|356535839|ref|XP_003536450.1| (e_value=0.0) PREDICTED: probable polygalacturonase-like [Glycine max];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=0.0) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23500.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12264640-12267074 FORWARD LENGTH=495;; (*ITAG) Solyc03g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2439038-2441907 transcript_region:SL2.40ch03:2439038..2441907- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00010856g0013.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.5|1|1|1|4|0|340; (*GB) gi|118778687|ref|XP_308799.3| (e_value=9e-155) AGAP006959-PA [Anopheles gambiae str. PEST];; (*SWP) sp|P51819|HSP83_IPONI (e_value=3e-139) Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1;; (*TAIR) AT5G52640.1 (e_value=5e-139) | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352542-21355147 FORWARD LENGTH=705;; (*ITAG) Solyc03g007890.2.1 (e_value=6e-139) genomic_reference:SL2.40ch03 gene_region:2410871-2414110 transcript_region:SL2.40ch03:2410871..2414110- go_terms:GO:0042623 functional_description:"Heat shock protein 90 (Fragment) (AHRD V1 **-- Q2L3T8_WHEAT); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623 NbS00046280g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|363807590|ref|NP_001242664.1| (e_value=6e-66) uncharacterized protein LOC100809411 [Glycine max];; (*SWP) sp|Q9LMX8|6PGL1_ARATH (e_value=6e-51) Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=5e-52) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc01g010250.2.1 (e_value=7e-75) genomic_reference:SL2.40ch01 gene_region:5033711-5037078 transcript_region:SL2.40ch01:5033711..5037078- go_terms:GO:0006098,GO:0005975 functional_description:"6-phosphogluconolactonase (AHRD V1 ***- B6U0H2_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0006098,GO:0005975 NbS00046280g0005.1 protein AED:0.36 eAED:0.36 QI:0|1|1|1|1|1|3|231|173; (*GB) gi|255541992|ref|XP_002512060.1| (e_value=2e-101) glycine-rich RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9QZH3|PPIE_MOUSE (e_value=9e-34) Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2;; (*TAIR) AT1G13690.1 (e_value=1e-97) | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 FORWARD LENGTH=177;; (*ITAG) Solyc04g005350.2.1 (e_value=1e-114) genomic_reference:SL2.40ch04 gene_region:253441-256670 transcript_region:SL2.40ch04:253441..256670- go_terms:GO:0003676,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase E (AHRD V1 **-- B4FJP1_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00022354g0002.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.33|0.5|0.33|3|0|135 NbS00043534g0005.1 protein AED:0.24 eAED:0.25 QI:0|1|0.5|1|1|0.5|2|0|548; (*GB) gi|359476931|ref|XP_002274417.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At2g13690-like [Vitis vinifera];; (*SWP) sp|Q9SKH2|Y2369_ARATH (e_value=6e-168) BTB/POZ domain-containing protein At2g13690 OS=Arabidopsis thaliana GN=PRL1-IFG PE=2 SV=2;; (*TAIR) AT2G13690.1 (e_value=5e-169) | Symbols: | PRLI-interacting factor, putative | chr2:5706704-5708895 REVERSE LENGTH=544;; (*ITAG) Solyc11g005950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:762421-766211 transcript_region:SL2.40ch11:762421..766211+ go_terms:GO:0005515 functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00043663g0004.1 protein AED:0.12 eAED:0.12 QI:145|0.88|0.9|1|0.66|0.8|10|343|764; (*GB) gi|255537383|ref|XP_002509758.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9C8S9|RH48_ARATH (e_value=0.0) Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1;; (*TAIR) AT1G63250.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:23463284-23466451 REVERSE LENGTH=798;; (*ITAG) Solyc12g056340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47655421-47661297 transcript_region:SL2.40ch12:47655421..47661297+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- A3RR99_RALSO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00019795g0016.1 protein AED:0.02 eAED:0.02 QI:98|0.77|0.8|1|0.77|0.8|10|101|1214; (*GB) gi|255546303|ref|XP_002514211.1| (e_value=0.0) multidrug resistance protein 1, 2, putative [Ricinus communis];; (*SWP) sp|Q9LHK4|AB8B_ARATH (e_value=0.0) Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1;; (*TAIR) AT3G28345.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc03g093650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48719533-48725961 transcript_region:SL2.40ch03:48719533..48725961- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0010329 NbS00019795g0017.1 protein AED:0.27 eAED:0.27 QI:61|0.87|0.88|1|0.87|0.88|9|600|598; (*GB) gi|350537047|ref|NP_001234789.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FUR2|IP5P2_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 2 OS=Arabidopsis thaliana GN=IP5P2 PE=1 SV=2;; (*TAIR) AT4G18010.2 (e_value=0.0) | Symbols: IP5PII | myo-inositol polyphosphate 5-phosphatase 2 | chr4:9991194-9994099 REVERSE LENGTH=613;; (*ITAG) Solyc08g077210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58274579-58279571 transcript_region:SL2.40ch08:58274579..58279571- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 *-** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00019795g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|281; (*GB) gi|225448367|ref|XP_002268645.1| (e_value=2e-159) PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=5e-159) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G09200.1 (e_value=9e-159) | Symbols: | Ribosomal protein L10 family protein | chr3:2823364-2825020 REVERSE LENGTH=320;; (*ITAG) Solyc05g054580.2.1 (e_value=3e-162) genomic_reference:SL2.40ch05 gene_region:63611603-63614235 transcript_region:SL2.40ch05:63611603..63614235- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7L9V8_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00019795g0002.1 protein AED:0.30 eAED:0.30 QI:0|0.71|0.75|0.87|1|1|8|737|327; (*GB) gi|225427324|ref|XP_002282232.1| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q42581|KPRS1_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 1, chloroplastic OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2;; (*TAIR) AT2G35390.2 (e_value=0.0) | Symbols: | Phosphoribosyltransferase family protein | chr2:14895528-14897581 REVERSE LENGTH=403;; (*ITAG) Solyc08g077200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00023308g0016.1 protein AED:0.16 eAED:0.16 QI:129|0|0.16|1|0|0.16|6|0|986; (*GB) gi|359479949|ref|XP_002270640.2| (e_value=3e-145) PREDICTED: DELLA protein GAI1-like [Vitis vinifera];; (*SWP) sp|Q8GXW1|RGL2_ARATH (e_value=6e-44) DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2;; (*TAIR) AT3G03450.1 (e_value=5e-45) | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547;; (*ITAG) Solyc01g079370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70965876-70969622 transcript_region:SL2.40ch01:70965876..70969622+ functional_description:"GRAS transcription factor (Fragment) (AHRD V1 *--- A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00023308g0012.1 protein AED:0.22 eAED:0.23 QI:24|0.5|0.2|1|0.5|0.4|5|0|546; (*GB) gi|357511381|ref|XP_003625979.1| (e_value=2e-105) INO80 complex subunit B [Medicago truncatula];; (*TAIR) AT2G47350.1 (e_value=4e-52) | Symbols: | HIT zinc finger ;PAPA-1-like conserved region | chr2:19434588-19437045 FORWARD LENGTH=486;; (*ITAG) Solyc01g079350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70955389-70958207 transcript_region:SL2.40ch01:70955389..70958207+ go_terms:GO:0005515 functional_description:"PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL7_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region "; GO:0005515 NbS00023308g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|297743985|emb|CBI36955.3| (e_value=1e-101) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=4e-47) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=3e-48) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc01g079380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70972797-70974284 transcript_region:SL2.40ch01:70972797..70974284+ go_terms:GO:0003700,GO:0042803 functional_description:"GRAS transcription factor (Fragment) (AHRD V1 **-* A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0042803 NbS00023308g0014.1 protein AED:0.17 eAED:0.23 QI:216|0.5|0.33|1|0.5|0.33|3|0|236; (*GB) gi|25140462|gb|AAN71731.1| (e_value=1e-51) WRKY transcription factor IIe-1 [Solanum lycopersicum];; (*SWP) sp|O64747|WRK35_ARATH (e_value=3e-18) Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1;; (*TAIR) AT2G34830.1 (e_value=2e-19) | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding protein 35 | chr2:14693839-14696378 REVERSE LENGTH=427;; (*ITAG) Solyc01g079360.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:70960474-70962139 transcript_region:SL2.40ch01:70960474..70962139- go_terms:GO:0045449 functional_description:"WRKY transcription factor 3 (AHRD V1 ***- C9DHZ2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00046237g0003.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|75 NbS00046237g0005.1 protein AED:0.15 eAED:0.36 QI:0|0|0|1|0|0|2|0|83 NbS00016355g0013.1 protein AED:0.13 eAED:0.13 QI:283|1|0.85|1|0.83|0.71|7|0|449; (*GB) gi|255552604|ref|XP_002517345.1| (e_value=0.0) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|Q9SSA5|CYP38_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1;; (*TAIR) AT3G01480.1 (e_value=0.0) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437;; (*ITAG) Solyc02g086910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44078232-44082017 transcript_region:SL2.40ch02:44078232..44082017- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 ***- A8IRU6_CHLRE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00016355g0012.1 protein AED:0.14 eAED:0.14 QI:73|1|0.66|1|0.8|0.83|6|0|232; (*GB) gi|226491578|ref|NP_001149011.1| (e_value=3e-69) LOC100282631 [Zea mays];; (*SWP) sp|A2YZ24|SWT7B_ORYSI (e_value=4e-69) Bidirectional sugar transporter SWEET7b OS=Oryza sativa subsp. indica GN=SWEET7B PE=3 SV=1;; (*TAIR) AT5G62850.1 (e_value=1e-63) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc02g086920.1.1 (e_value=4e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44083124-44084780 transcript_region:SL2.40ch02:44083124..44084780- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00016355g0014.1 protein AED:0.39 eAED:0.40 QI:0|1|0.33|1|1|1|3|0|293; (*GB) gi|33338872|gb|AAQ14193.1|AF238305_1 (e_value=2e-163) calcium homeostasis regulator CHoR1 [Solanum tuberosum];; (*TAIR) AT3G55250.1 (e_value=1e-110) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20479302-20480324 FORWARD LENGTH=277;; (*ITAG) Solyc02g086890.2.1 (e_value=6e-161) genomic_reference:SL2.40ch02 gene_region:44067938-44069907 transcript_region:SL2.40ch02:44067938..44069907- functional_description:"Calcium homeostasis regulator chor1 (Fragment) (AHRD V1 *-*- A6N1L7_ORYSI)"; NbS00016355g0001.1 protein AED:0.28 eAED:0.28 QI:159|1|0.88|1|0.62|0.44|9|390|385; (*GB) gi|26454627|sp|Q07511.2|FDH_SOLTU (e_value=0.0) RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor;; (*SWP) sp|Q07511|FDH_SOLTU (e_value=0.0) Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2;; (*TAIR) AT5G14780.1 (e_value=0.0) | Symbols: FDH | formate dehydrogenase | chr5:4777043-4779190 FORWARD LENGTH=384;; (*ITAG) Solyc02g086880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44063088-44067604 transcript_region:SL2.40ch02:44063088..44067604+ go_terms:GO:0004617 functional_description:"Formate dehydrogenase (AHRD V1 **** Q5NE18_SOLLC); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0004617 NbS00016355g0015.1 protein AED:0.27 eAED:0.28 QI:100|0.85|0.90|0.95|0.85|0.80|21|409|540; (*GB) gi|225452480|ref|XP_002278629.1| (e_value=0.0) PREDICTED: protein SAMHD1 homolog [Vitis vinifera];; (*SWP) sp|B0G107|SAMH1_DICDI (e_value=4e-82) Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1;; (*TAIR) AT5G40270.1 (e_value=0.0) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc02g086900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44070513-44077345 transcript_region:SL2.40ch02:44070513..44077345+ go_terms:GO:0003824 functional_description:"Metal-dependent phosphohydrolase HD domain-containing protein (AHRD V1 **-- D7MJA0_ARALY); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00004850g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|3|0|392; (*GB) gi|359481508|ref|XP_002274877.2| (e_value=8e-149) PREDICTED: uncharacterized protein LOC100251629 [Vitis vinifera];; (*TAIR) AT5G59830.2 (e_value=1e-76) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24105423-24107071 FORWARD LENGTH=425;; (*ITAG) Solyc09g010350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00004850g0019.1 protein AED:0.21 eAED:0.23 QI:198|0|0.66|1|0|0|3|179|244; (*GB) gi|350536135|ref|NP_001233975.1| (e_value=5e-116) transcription factor [Solanum lycopersicum];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=1e-96) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=2e-88) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc01g111500.2.1 (e_value=9e-135) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00004850g0016.1 protein AED:0.03 eAED:0.03 QI:233|1|1|1|0.5|1|3|316|248; (*GB) gi|77999287|gb|ABB16990.1| (e_value=2e-158) proteasome-like protein alpha subunit [Solanum tuberosum];; (*SWP) sp|O24030|PSA7_SOLLC (e_value=3e-159) Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1;; (*TAIR) AT3G51260.1 (e_value=3e-153) | Symbols: PAD1 | 20S proteasome alpha subunit PAD1 | chr3:19031086-19032746 FORWARD LENGTH=250;; (*ITAG) Solyc01g111450.2.1 (e_value=5e-161) genomic_reference:SL2.40ch01 gene_region:89446679-89449724 transcript_region:SL2.40ch01:89446679..89449724+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT8_SOLTU); contains Interpro domain(s) IPR000426 Proteasome, alpha-subunit, conserved site "; GO:0019773,GO:0005839 NbS00004850g0017.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|4|259|440; (*GB) gi|198400319|gb|ACH87168.1| (e_value=0.0) senescence-related protein [Camellia sinensis];; (*TAIR) AT2G17840.1 (e_value=1e-154) | Symbols: ERD7 | Senescence/dehydration-associated protein-related | chr2:7755923-7757798 REVERSE LENGTH=452;; (*ITAG) Solyc01g111440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89441082-89454437 transcript_region:SL2.40ch01:89441082..89454437+ functional_description:"Senescence-associated protein 12 (AHRD V1 *-*- O81657_HEMSP); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00004850g0009.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|1|1|2|0|63 NbS00004850g0024.1 protein AED:0.37 eAED:0.84 QI:0|0|0|1|0|0|2|0|140 NbS00006548g0003.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|57013935|ref|YP_173408.1| (e_value=9e-64) hypothetical protein NitaMp064 [Nicotiana tabacum]; NbS00006548g0017.1 protein AED:0.53 eAED:0.53 QI:0|0.2|0|0.33|0.8|0.66|6|0|339; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=2e-79) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=5e-81) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-75) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-82) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00006548g0019.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|0|0.33|3|0|210; (*ITAG) Solyc11g039970.1.1 (e_value=3e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006548g0016.1 protein AED:0.27 eAED:0.42 QI:0|0|0|1|0|0|3|0|182; (*GB) gi|297740917|emb|CBI31099.3| (e_value=2e-33) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-14) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=5e-15) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc01g065810.1.1 (e_value=2e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:64800051-64800539 transcript_region:SL2.40ch01:64800051..64800539+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00015891g0004.1 protein AED:0.13 eAED:0.13 QI:3|0.33|0|1|0.33|0.5|4|235|160; (*GB) gi|224106371|ref|XP_002314144.1| (e_value=8e-12) predicted protein [Populus trichocarpa];; (*TAIR) AT5G59080.1 (e_value=1e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23847691-23848403 REVERSE LENGTH=135;; (*ITAG) Solyc06g076470.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:43901381-43904096 transcript_region:SL2.40ch06:43901381..43904096+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015891g0006.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.33|0|0.33|3|0|98 NbS00006820g0015.1 protein AED:0.07 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|273; (*GB) gi|226872|prf||1609235A (e_value=1e-149) chlorophyll a/b binding protein;; (*SWP) sp|P27522|CB13_SOLLC (e_value=3e-150) Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1;; (*TAIR) AT1G61520.3 (e_value=6e-146) | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700152-22701149 FORWARD LENGTH=273;; (*ITAG) Solyc12g011280.1.1 (e_value=1e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4139454-4140793 transcript_region:SL2.40ch12:4139454..4140793- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00006820g0024.1 protein AED:0.07 eAED:0.07 QI:34|0.76|0.55|1|0.47|0.44|18|127|992; (*GB) gi|359494589|ref|XP_002270779.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261047 [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=4e-104) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G72250.1 (e_value=0.0) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr1:27192902-27198118 FORWARD LENGTH=1195;; (*ITAG) Solyc12g011290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4145546-4151148 transcript_region:SL2.40ch12:4145546..4151148+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00006820g0021.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|206; (*GB) gi|334902911|gb|AEH25587.1| (e_value=3e-32) transposase [Solanum demissum];; (*ITAG) Solyc10g054680.1.1 (e_value=5e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:51207770-51208849 transcript_region:SL2.40ch10:51207770..51208849+ functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006820g0023.1 protein AED:0.37 eAED:0.39 QI:3|0|0|0.5|1|1|2|0|163 NbS00006820g0025.1 protein AED:0.50 eAED:0.50 QI:0|0.5|0.44|0.66|0.75|0.66|9|0|455; (*GB) gi|350539363|ref|NP_001234645.1| (e_value=0.0) ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum];; (*SWP) sp|Q5XF75|EFTS_ARATH (e_value=5e-150) Elongation factor Ts, mitochondrial OS=Arabidopsis thaliana GN=EFTS PE=2 SV=1;; (*TAIR) AT4G11120.1 (e_value=3e-151) | Symbols: | translation elongation factor Ts (EF-Ts), putative | chr4:6778066-6779934 FORWARD LENGTH=395;; (*ITAG) Solyc12g011270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4132345-4138535 transcript_region:SL2.40ch12:4132345..4138535+ go_terms:GO:0005622 functional_description:"Elongation factor Ts (AHRD V1 ***- Q9SWW0_SOLLC); contains Interpro domain(s) IPR018101 Translation elongation factor Ts, conserved site "; GO:0005622 NbS00003841g0002.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.8|1|1|5|0|283; (*GB) gi|54261825|gb|AAV31175.1| (e_value=2e-13) Putative disease resistance protein, identical [Solanum tuberosum];; (*ITAG) Solyc07g009180.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00050359g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.83|0.71|1|0.66|0.42|7|368|391; (*GB) gi|224080584|ref|XP_002306170.1| (e_value=5e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT23|BH121_ARATH (e_value=4e-81) Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1;; (*TAIR) AT3G19860.1 (e_value=5e-83) | Symbols: bHLH121 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6904579-6905863 FORWARD LENGTH=284;; (*ITAG) Solyc01g111130.2.1 (e_value=3e-156) genomic_reference:SL2.40ch01 gene_region:89262003-89265946 transcript_region:SL2.40ch01:89262003..89265946- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00050359g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|93 NbS00008069g0003.1 protein AED:0.23 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|280; (*GB) gi|134303286|gb|ABO70986.1| (e_value=0.0) gibberellin 2-oxidase 5 [Nicotiana tabacum];; (*SWP) sp|Q9XG83|G2OX_PHACN (e_value=5e-127) Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1;; (*TAIR) AT1G30040.1 (e_value=2e-121) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc02g070430.2.1 (e_value=5e-166) genomic_reference:SL2.40ch02 gene_region:34734811-34736850 transcript_region:SL2.40ch02:34734811..34736850- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase 1 (AHRD V1 **** A7LCJ5_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00008069g0004.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|134303286|gb|ABO70986.1| (e_value=6e-47) gibberellin 2-oxidase 5 [Nicotiana tabacum];; (*SWP) sp|Q9XG83|G2OX_PHACN (e_value=1e-20) Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1;; (*TAIR) AT1G30040.1 (e_value=2e-19) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc02g070430.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:34734811-34736850 transcript_region:SL2.40ch02:34734811..34736850- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase 1 (AHRD V1 **** A7LCJ5_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00039206g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|221; (*GB) gi|309256353|gb|ADO61004.1| (e_value=7e-34) sleepy 1 [Helianthus annuus];; (*SWP) sp|Q9STX3|GID2_ARATH (e_value=2e-26) F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1;; (*TAIR) AT4G24210.1 (e_value=1e-27) | Symbols: SLY1 | F-box family protein | chr4:12563658-12564113 FORWARD LENGTH=151;; (*ITAG) Solyc04g078390.1.1 (e_value=2e-66) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:60724432-60725082 transcript_region:SL2.40ch04:60724432..60725082+ functional_description:"F-box protein (AHRD V1 *-*- A3RJX0_GOSHI); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00039206g0005.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|351653843|ref|YP_004891459.1| (e_value=1e-62) photosystem II protein D2 (chloroplast) [Pseudotsuga sinensis var. wilsoniana];; (*SWP) sp|Q4VZN8|PSBD_CUCSA (e_value=6e-64) Photosystem II D2 protein OS=Cucumis sativus GN=psbD PE=3 SV=1;; (*ITAG) ATCG00270.1 (e_value=2e-63) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353;; (*ITAG) Solyc09g055950.1.1 (e_value=5e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:41860254-41860756 transcript_region:SL2.40ch09:41860254..41860756+ go_terms:GO:0030077 functional_description:"Photosystem II D2 protein (AHRD V1 ***- D3WE71_9MAGN); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00039206g0006.1 protein AED:0.47 eAED:0.50 QI:0|0|0|1|0|0|2|0|60; (*GB) gi|156618902|ref|YP_001430038.1| (e_value=1e-21) photosystem II protein D2 [Cuscuta gronovii];; (*SWP) sp|Q49CA8|PSBD_CUSSA (e_value=3e-23) Photosystem II D2 protein OS=Cuscuta sandwichiana GN=psbD PE=3 SV=1;; (*ITAG) ATCG00270.1 (e_value=6e-24) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353; NbS00007410g0002.1 protein AED:0.13 eAED:0.15 QI:202|0.73|0.75|1|0.93|0.93|16|338|777; (*GB) gi|356528364|ref|XP_003532774.1| (e_value=0.0) PREDICTED: exonuclease 1-like [Glycine max];; (*SWP) sp|Q8L6Z7|EXO1_ARATH (e_value=0.0) Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2;; (*TAIR) AT1G29630.2 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr1:10349587-10353538 FORWARD LENGTH=735;; (*ITAG) Solyc02g071530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35501383-35509962 transcript_region:SL2.40ch02:35501383..35509962+ go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *--- FEN_CALMQ); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00007410g0001.1 protein AED:0.32 eAED:0.39 QI:178|0.66|0.71|1|1|1|7|0|264; (*GB) gi|225462464|ref|XP_002269484.1| (e_value=2e-98) PREDICTED: bidirectional sugar transporter SWEET2a [Vitis vinifera];; (*SWP) sp|Q5JJY5|SWT2A_ORYSJ (e_value=8e-82) Bidirectional sugar transporter SWEET2a OS=Oryza sativa subsp. japonica GN=SWEET2A PE=2 SV=1;; (*TAIR) AT3G14770.1 (e_value=2e-82) | Symbols: SWEET2, AtSWEET2 | Nodulin MtN3 family protein | chr3:4957787-4959202 REVERSE LENGTH=236;; (*ITAG) Solyc02g071520.2.1 (e_value=1e-126) genomic_reference:SL2.40ch02 gene_region:35495695-35498922 transcript_region:SL2.40ch02:35495695..35498922- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DICDI); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00018312g0003.1 protein AED:0.14 eAED:0.22 QI:0|0|0|0.66|0.5|0.66|3|0|344; (*GB) gi|224089090|ref|XP_002335059.1| (e_value=5e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g085460.1.1 (e_value=3e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00023747g0001.1 protein AED:0.00 eAED:0.07 QI:144|1|0.5|1|0|0|2|0|366; (*GB) gi|357496667|ref|XP_003618622.1| (e_value=4e-24) hypothetical protein MTR_6g013790 [Medicago truncatula];; (*TAIR) AT5G39380.1 (e_value=1e-18) | Symbols: | Plant calmodulin-binding protein-related | chr5:15759163-15760686 REVERSE LENGTH=507;; (*ITAG) Solyc02g088580.1.1 (e_value=6e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45211594-45213711 transcript_region:SL2.40ch02:45211594..45213711+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00023747g0007.1 protein AED:0.20 eAED:0.22 QI:0|0.66|0.71|1|1|1|7|660|575; (*GB) gi|225452954|ref|XP_002284273.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 13-like [Vitis vinifera];; (*SWP) sp|Q0WV13|GAUTD_ARATH (e_value=0.0) Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1;; (*TAIR) AT3G01040.2 (e_value=0.0) | Symbols: GAUT13 | galacturonosyltransferase 13 | chr3:9392-11979 FORWARD LENGTH=532;; (*ITAG) Solyc02g067060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31872754-31878126 transcript_region:SL2.40ch02:31872754..31878126- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00006525g0005.1 protein AED:0.23 eAED:0.23 QI:217|0|0.66|1|0|0.33|3|569|320; (*GB) gi|153793260|gb|ABS50432.1| (e_value=0.0) chilling-responsive protein [Nicotiana tabacum];; (*SWP) sp|P46518|LEA14_GOSHI (e_value=9e-20) Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1;; (*TAIR) AT2G44060.2 (e_value=2e-156) | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325;; (*ITAG) Solyc08g015690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5133715-5137445 transcript_region:SL2.40ch08:5133715..5137445- go_terms:GO:0009269 functional_description:"Late-embryogenesis abundant protein 2 (AHRD V1 **-- C6T750_SOYBN); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00006525g0016.1 protein AED:0.20 eAED:0.24 QI:49|0|0|1|0.5|0.33|3|0|406; (*GB) gi|193290724|gb|ACF17670.1| (e_value=0.0) putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum];; (*SWP) sp|Q32RM2|ODPB_ZYGCR (e_value=1e-155) Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2;; (*TAIR) AT1G30120.1 (e_value=0.0) | Symbols: PDH-E1 BETA | pyruvate dehydrogenase E1 beta | chr1:10584350-10586477 REVERSE LENGTH=406;; (*ITAG) Solyc04g008590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2195990-2201197 transcript_region:SL2.40ch04:2195990..2201197+ go_terms:GO:0008152 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 ***- B6TQ36_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0008152 NbS00006525g0015.1 protein AED:0.12 eAED:0.12 QI:18|1|0.71|1|0.83|0.57|7|0|303; (*GB) gi|356556629|ref|XP_003546626.1| (e_value=3e-171) PREDICTED: uncharacterized protein LOC100783938 [Glycine max];; (*SWP) sp|Q9NPC3|CIP1_HUMAN (e_value=2e-14) E3 ubiquitin-protein ligase CCNB1IP1 OS=Homo sapiens GN=CCNB1IP1 PE=1 SV=1;; (*TAIR) AT1G53490.1 (e_value=1e-156) | Symbols: | RING/U-box superfamily protein | chr1:19965146-19966811 FORWARD LENGTH=304;; (*ITAG) Solyc08g015770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5481552-5484910 transcript_region:SL2.40ch08:5481552..5484910- functional_description:"E3 ubiquitin-protein ligase CCNB1IP1 (AHRD V1 *--- CIP1_HUMAN)"; NbS00006525g0014.1 protein AED:0.27 eAED:0.27 QI:74|0.87|0.88|1|0.87|0.77|9|30|579; (*GB) gi|255543489|ref|XP_002512807.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=0.0) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=0.0) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc12g017910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7757083-7763435 transcript_region:SL2.40ch12:7757083..7763435- go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00007205g0010.1 protein AED:0.01 eAED:0.03 QI:81|1|0.66|1|1|1|3|0|364; (*GB) gi|270118384|emb|CBG76064.1| (e_value=3e-89) Myb 12 transcription factor [Solanum chmielewskii];; (*SWP) sp|O22264|MYB12_ARATH (e_value=4e-64) Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=3e-66) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc12g049350.1.1 (e_value=4e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46305533-46308055 transcript_region:SL2.40ch12:46305533..46308055- go_terms:GO:0003677,GO:0045449 functional_description:"Myb 12 transcription factor (AHRD V1 ***- D2EBC3_9SOLN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00007205g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|405; (*GB) gi|255585473|ref|XP_002533429.1| (e_value=2e-67) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=2e-31) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT2G23945.1 (e_value=5e-67) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:10185229-10186605 REVERSE LENGTH=458;; (*ITAG) Solyc07g054650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60236558-60237904 transcript_region:SL2.40ch07:60236558..60237904+ go_terms:GO:0005515,GO:0003677 functional_description:"Aspartyl protease family protein (AHRD V1 **-- Q9SZV6_ARATH); contains Interpro domain(s) IPR009007 Peptidase aspartic, catalytic "; GO:0005515,GO:0003677 NbS00007205g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|236; (*GB) gi|224136722|ref|XP_002322399.1| (e_value=7e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1PEC0|PME42_ARATH (e_value=3e-65) Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1;; (*TAIR) AT4G03930.1 (e_value=2e-66) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1870422-1872387 FORWARD LENGTH=524;; (*ITAG) Solyc00g023470.1.1 (e_value=3e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00001510g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.65|0.66|0.95|0.6|0.80|21|391|1020; (*GB) gi|224067978|ref|XP_002302628.1| (e_value=0.0) SET domain protein [Populus trichocarpa];; (*SWP) sp|Q9SUE7|ATX4_ARATH (e_value=2e-126) Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3;; (*TAIR) AT4G27910.1 (e_value=2e-127) | Symbols: ATX4, SDG16 | SET domain protein 16 | chr4:13894694-13900256 FORWARD LENGTH=1027;; (*ITAG) Solyc01g095890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78775059-78787237 transcript_region:SL2.40ch01:78775059..78787237- go_terms:GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B3LSN4_YEAS1); contains Interpro domain(s) IPR001214 SET "; GO:0003677 NbS00004453g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|91; (*GB) gi|351727911|ref|NP_001236665.1| (e_value=3e-22) uncharacterized protein LOC100500603 precursor [Glycine max];; (*ITAG) Solyc01g109900.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:88504593-88506151 transcript_region:SL2.40ch01:88504593..88506151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006625g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|255546113|ref|XP_002514116.1| (e_value=1e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26110.1 (e_value=7e-23) | Symbols: | Protein of unknown function (DUF761) | chr2:11120869-11121798 FORWARD LENGTH=309;; (*ITAG) Solyc05g018820.1.1 (e_value=4e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:23992305-23992874 transcript_region:SL2.40ch05:23992305..23992874- functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 **-- Q9FGR3_ARATH)"; NbS00025356g0009.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|1|0.8|5|0|526; (*GB) gi|359475480|ref|XP_002264837.2| (e_value=0.0) PREDICTED: endo-1,4-beta-xylanase A-like [Vitis vinifera];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=1e-23) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33840.1 (e_value=2e-165) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc05g051260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60688299-60691358 transcript_region:SL2.40ch05:60688299..60691358+ go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00025356g0008.1 protein AED:0.12 eAED:0.18 QI:0|1|0.75|1|1|1|4|229|246; (*GB) gi|255573125|ref|XP_002527492.1| (e_value=1e-84) Protein SYM1, putative [Ricinus communis];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=3e-20) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT4G33905.1 (e_value=2e-81) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:16254065-16255592 REVERSE LENGTH=261;; (*ITAG) Solyc11g012990.1.1 (e_value=2e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5836650-5838075 transcript_region:SL2.40ch11:5836650..5838075+ go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B0WWR6_CULQU); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00001133g0005.1 protein AED:0.32 eAED:0.34 QI:0|0.41|0.15|0.92|1|1|13|0|571; (*GB) gi|225435726|ref|XP_002285701.1| (e_value=0.0) PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera];; (*SWP) sp|Q84P17|AEE18_ARATH (e_value=0.0) Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1;; (*TAIR) AT1G55320.1 (e_value=0.0) | Symbols: AAE18 | acyl-activating enzyme 18 | chr1:20633371-20636659 FORWARD LENGTH=727;; (*ITAG) Solyc12g038400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35197846-35215974 transcript_region:SL2.40ch12:35197846..35215974+ go_terms:GO:0016874 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016874 NbS00001133g0019.1 protein AED:0.35 eAED:0.35 QI:167|0.66|0.5|1|0.33|0.5|4|363|196; (*ITAG) Solyc01g005820.2.1 (e_value=2e-11) genomic_reference:SL2.40ch01 gene_region:537499-541732 transcript_region:SL2.40ch01:537499..541732+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 4 (AHRD V1 *--- B6U7F9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00001133g0004.1 protein AED:0.57 eAED:0.57 QI:0|1|0.5|1|0|0|2|518|92; (*GB) gi|380042368|gb|AFD33348.1| (e_value=4e-19) acyl-activating enzyme 4, partial [Cannabis sativa];; (*SWP) sp|Q84P17|AEE18_ARATH (e_value=4e-18) Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1;; (*TAIR) AT1G55320.1 (e_value=3e-19) | Symbols: AAE18 | acyl-activating enzyme 18 | chr1:20633371-20636659 FORWARD LENGTH=727; NbS00001133g0008.1 protein AED:0.61 eAED:0.66 QI:0|0.5|0.14|0.71|1|1|7|0|200; (*GB) gi|225435751|ref|XP_002283606.1| (e_value=4e-83) PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q6NLS8|PTHM_ARATH (e_value=9e-72) Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1;; (*TAIR) AT5G19830.1 (e_value=7e-73) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:6703383-6705125 FORWARD LENGTH=219;; (*ITAG) Solyc02g093030.2.1 (e_value=1e-58) genomic_reference:SL2.40ch02 gene_region:48551254-48557510 transcript_region:SL2.40ch02:48551254..48557510- go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00001133g0023.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|442; (*GB) gi|10798748|dbj|BAB16426.1| (e_value=0.0) EIG-I24 [Nicotiana tabacum];; (*SWP) sp|Q8LL69|DBNBT_TAXCA (e_value=6e-53) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase OS=Taxus canadensis GN=TAX10 PE=1 SV=1;; (*TAIR) AT1G28680.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:10078222-10079763 FORWARD LENGTH=451;; (*ITAG) Solyc04g079720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61682404-61684269 transcript_region:SL2.40ch04:61682404..61684269- go_terms:GO:0016747,GO:0055114 functional_description:"Transferase family protein (AHRD V1 **-- D7KCY6_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747,GO:0055114 NbS00001133g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|255572288|ref|XP_002527083.1| (e_value=2e-80) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G08810.1 (e_value=3e-77) | Symbols: SUB1 | calcium ion binding | chr4:5616204-5617862 REVERSE LENGTH=552;; (*ITAG) Solyc07g045210.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55647405-55649153 transcript_region:SL2.40ch07:55647405..55649153- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00001133g0006.1 protein AED:0.43 eAED:0.43 QI:0|0.6|0.5|0.66|1|1|6|0|141; (*GB) gi|225427328|ref|XP_002282266.1| (e_value=2e-65) PREDICTED: vesicle transport protein GOT1A [Vitis vinifera];; (*SWP) sp|Q9CR60|GOT1B_MOUSE (e_value=1e-22) Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1;; (*TAIR) AT5G01430.2 (e_value=1e-64) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:176797-178010 REVERSE LENGTH=140;; (*ITAG) Solyc02g069610.2.1 (e_value=4e-69) genomic_reference:SL2.40ch02 gene_region:34031707-34035220 transcript_region:SL2.40ch02:34031707..34035220+ go_terms:GO:0005515,GO:0004871 functional_description:"Protein transport protein GOT1 (AHRD V1 **-- GOT1_YEAST); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515,GO:0004871 NbS00001133g0028.1 protein AED:0.24 eAED:0.31 QI:69|0|0|1|0|0|2|0|398; (*GB) gi|225435743|ref|XP_002285710.1| (e_value=2e-133) PREDICTED: uncharacterized protein LOC100253639 isoform 1 [Vitis vinifera];; (*TAIR) AT4G08810.1 (e_value=3e-109) | Symbols: SUB1 | calcium ion binding | chr4:5616204-5617862 REVERSE LENGTH=552;; (*ITAG) Solyc01g005690.2.1 (e_value=4e-131) genomic_reference:SL2.40ch01 gene_region:478540-480386 transcript_region:SL2.40ch01:478540..480386- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00033917g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|244|560; (*GB) gi|225440047|ref|XP_002276858.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 86A1 [Vitis vinifera];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=0.0) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc09g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1520626-1524613 transcript_region:SL2.40ch09:1520626..1524613+ go_terms:GO:0080043,GO:0015020,GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0015020,GO:0080044 NbS00033917g0007.1 protein AED:0.07 eAED:0.10 QI:0|0.75|0.55|1|1|1|9|0|853; (*GB) gi|98962497|gb|ABF59516.1| (e_value=0.0) putative spindle disassembly related protein CDC48 [Nicotiana tabacum];; (*SWP) sp|P54774|CDC48_SOYBN (e_value=0.0) Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00033917g0013.1 protein AED:0.17 eAED:0.17 QI:171|1|1|1|0.5|1|3|260|92; (*GB) gi|225459215|ref|XP_002285745.1| (e_value=5e-43) PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera];; (*TAIR) AT5G40080.1 (e_value=2e-35) | Symbols: | Mitochondrial ribosomal protein L27 | chr5:16040190-16041529 REVERSE LENGTH=94;; (*ITAG) Solyc04g074690.2.1 (e_value=7e-35) genomic_reference:SL2.40ch04 gene_region:58196147-58203239 transcript_region:SL2.40ch04:58196147..58203239- functional_description:"39S ribosomal protein L41 mitochondrial (AHRD V1 ***- B5XGR0_SALSA); contains Interpro domain(s) IPR019189 Ribosomal protein L27/L41, mitochondrial "; NbC26304892g0001.1 protein AED:0.16 eAED:0.29 QI:0|0|0|0.75|1|1|4|0|244; (*GB) gi|307136300|gb|ADN34124.1| (e_value=1e-45) serine-rich protein [Cucumis melo subsp. melo];; (*TAIR) AT5G11090.1 (e_value=6e-43) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc03g117290.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60525251-60525697 transcript_region:SL2.40ch03:60525251..60525697+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00056299g0012.1 protein AED:0.26 eAED:0.26 QI:232|1|0.66|1|1|1|3|0|132; (*GB) gi|224087407|ref|XP_002308154.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LCY2|ISAM2_ARATH (e_value=1e-45) Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2;; (*TAIR) AT5G03905.1 (e_value=8e-47) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1052728-1054041 FORWARD LENGTH=158;; (*ITAG) Solyc01g100410.2.1 (e_value=1e-67) genomic_reference:SL2.40ch01 gene_region:82205026-82210979 transcript_region:SL2.40ch01:82205026..82210979+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein ErpA (AHRD V1 ***- C8Q1G7_9GAMM); contains Interpro domain(s) IPR016092 FeS cluster insertion "; GO:0016226 NbS00056299g0008.1 protein AED:0.01 eAED:0.01 QI:11|1|1|1|0.5|0.33|3|619|344; (*GB) gi|255542880|ref|XP_002512503.1| (e_value=3e-137) ribosomal pseudouridine synthase, putative [Ricinus communis];; (*SWP) sp|Q7XA65|PUS1_ARATH (e_value=6e-120) RNA pseudourine synthase 1 OS=Arabidopsis thaliana GN=At1g56345 PE=2 SV=1;; (*TAIR) AT1G56345.1 (e_value=4e-121) | Symbols: | Pseudouridine synthase family protein | chr1:21093409-21094454 REVERSE LENGTH=322;; (*ITAG) Solyc01g100400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82202712-82204243 transcript_region:SL2.40ch01:82202712..82204243- go_terms:GO:0009451 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7KAZ8_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009451 NbS00056299g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.85|0.5|1|1|1|8|0|800; (*GB) gi|224123948|ref|XP_002330249.1| (e_value=0.0) vacuolar H+-translocating inorganic pyrophosphatase [Populus trichocarpa];; (*SWP) sp|P31414|AVP1_ARATH (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc01g100390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82195092-82200189 transcript_region:SL2.40ch01:82195092..82200189- go_terms:GO:0016020 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0016020 NbS00000879g0010.1 protein AED:0.18 eAED:0.18 QI:102|0.79|0.8|1|0.91|0.92|25|236|1129; (*GB) gi|224119536|ref|XP_002331185.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P52590|NU107_RAT (e_value=8e-22) Nuclear pore complex protein Nup107 OS=Rattus norvegicus GN=Nup107 PE=1 SV=1;; (*TAIR) AT3G14120.2 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:4677993-4685455 FORWARD LENGTH=1077;; (*ITAG) Solyc12g049410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46417285-46438427 transcript_region:SL2.40ch12:46417285..46438427+ go_terms:GO:0005643 functional_description:"Nuclear pore complex protein Nup107 (AHRD V1 *-*- B5X120_SALSA); contains Interpro domain(s) IPR007252 Nuclear pore protein 84/107 "; GO:0005643 NbS00000879g0003.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|1|1|3|0|306; (*GB) gi|310892552|gb|ADP37418.1| (e_value=3e-80) ethylene-responsive-element-binding factor 3 [Petunia x hybrida];; (*SWP) sp|Q6K7E6|ERF1_ORYSJ (e_value=2e-11) Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1;; (*ITAG) Solyc12g049560.1.1 (e_value=7e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46647808-46650026 transcript_region:SL2.40ch12:46647808..46650026- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00016035g0004.1 protein AED:0.29 eAED:0.29 QI:177|0.8|0.66|1|0.6|0.33|6|0|468; (*GB) gi|133711805|gb|ABO36623.1| (e_value=0.0) putative RNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q5SNN4|C3H40_ORYSJ (e_value=0.0) Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1;; (*TAIR) AT1G07360.1 (e_value=0.0) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481;; (*ITAG) Solyc10g079190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60106005-60110030 transcript_region:SL2.40ch10:60106005..60110030- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Pre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00003895g0011.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|269; (*GB) gi|302141969|emb|CBI19172.3| (e_value=3e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=1e-103) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT1G34790.1 (e_value=1e-104) | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12763953-12765489 FORWARD LENGTH=303;; (*ITAG) Solyc04g074320.1.1 (e_value=6e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57920388-57921358 transcript_region:SL2.40ch04:57920388..57921358+ go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *--- D7KHP2_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00003895g0010.1 protein AED:0.07 eAED:0.16 QI:99|0.6|0.5|0.83|0.6|0.66|6|0|316; (*GB) gi|359492447|ref|XP_003634414.1| (e_value=3e-58) PREDICTED: uncharacterized protein LOC100253997 [Vitis vinifera];; (*SWP) sp|Q76LC6|RBM24_DANRE (e_value=2e-30) RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1;; (*TAIR) AT1G78260.1 (e_value=4e-50) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:29447317-29450181 FORWARD LENGTH=287;; (*ITAG) Solyc04g074310.2.1 (e_value=1e-73) genomic_reference:SL2.40ch04 gene_region:57910504-57917099 transcript_region:SL2.40ch04:57910504..57917099+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--- Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00016996g0012.1 protein AED:0.17 eAED:0.17 QI:0|1|0.9|1|0.77|0.8|10|188|384; (*GB) gi|225451993|ref|XP_002283479.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera];; (*SWP) sp|Q6PAV2|HERC4_MOUSE (e_value=3e-43) Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2;; (*TAIR) AT3G02510.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:522086-524536 REVERSE LENGTH=393;; (*ITAG) Solyc02g085780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43134602-43139924 transcript_region:SL2.40ch02:43134602..43139924- go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00016996g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|296088529|emb|CBI37520.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-16) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*ITAG) Solyc01g095760.2.1 (e_value=4e-42) genomic_reference:SL2.40ch01 gene_region:78718439-78719988 transcript_region:SL2.40ch01:78718439..78719988+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00016996g0017.1 protein AED:0.16 eAED:0.26 QI:76|0.66|0.5|1|0.33|0|4|0|170; (*GB) gi|296087301|emb|CBI33675.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54493|GLUP_BACSU (e_value=4e-21) Rhomboid protease gluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2;; (*TAIR) AT5G38510.2 (e_value=1e-61) | Symbols: | Rhomboid-related intramembrane serine protease family protein | chr5:15417839-15420002 REVERSE LENGTH=434;; (*ITAG) Solyc02g085760.2.1 (e_value=4e-84) genomic_reference:SL2.40ch02 gene_region:43130910-43132931 transcript_region:SL2.40ch02:43130910..43132931+ go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7MJX8_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00016996g0013.1 protein AED:0.62 eAED:0.69 QI:0|0.5|0|1|0.5|0.66|3|0|90; (*GB) gi|388503856|gb|AFK39994.1| (e_value=1e-34) unknown [Lotus japonicus];; (*TAIR) AT5G16060.1 (e_value=1e-33) | Symbols: | Cytochrome c oxidase biogenesis protein Cmc1-like | chr5:5246161-5247209 FORWARD LENGTH=95; NbS00018059g0007.1 protein AED:0.12 eAED:0.12 QI:43|0.66|0.5|1|0.66|1|4|0|311; (*GB) gi|149275417|gb|ABR23053.1| (e_value=4e-167) anionic peroxidase swpa7 [Ipomoea batatas];; (*SWP) sp|Q9SZB9|PER47_ARATH (e_value=5e-143) Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=2;; (*TAIR) AT4G33420.1 (e_value=3e-144) | Symbols: | Peroxidase superfamily protein | chr4:16084856-16086105 FORWARD LENGTH=325;; (*ITAG) Solyc06g076630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43981955-43984216 transcript_region:SL2.40ch06:43981955..43984216- go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** C0KKH9_9CARY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbC26100303g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.5|1|0.66|0.5|4|0|215; (*GB) gi|225439972|ref|XP_002281059.1| (e_value=2e-100) PREDICTED: putative serine/threonine-protein kinase [Vitis vinifera];; (*SWP) sp|P85193|PK01_HELAN (e_value=6e-94) Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT1G16670.1 (e_value=4e-74) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc10g084110.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63093878-63096332 transcript_region:SL2.40ch10:63093878..63096332+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- C6FF64_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006030g0006.1 protein AED:0.14 eAED:0.33 QI:0|0.33|0.5|1|0.33|0.25|4|0|226; (*ITAG) Solyc02g005530.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:3580853-3586505 transcript_region:SL2.40ch02:3580853..3586505- functional_description:"Helitron helicase-like protein (AHRD V1 *-*- D0NJ00_PHYIN); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00006030g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.6|0.33|0.83|0.6|0.66|6|0|327; (*GB) gi|356559384|ref|XP_003547979.1| (e_value=5e-129) PREDICTED: uncharacterized hydrolase yugF-like [Glycine max];; (*TAIR) AT4G36530.2 (e_value=2e-120) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17240120-17241770 REVERSE LENGTH=378;; (*ITAG) Solyc02g085070.1.1 (e_value=1e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42661304-42663398 transcript_region:SL2.40ch02:42661304..42663398+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MBG9_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00007672g0001.1 protein AED:0.03 eAED:0.22 QI:72|-1|0|1|-1|1|1|0|135; (*GB) gi|225459105|ref|XP_002283873.1| (e_value=3e-25) PREDICTED: uncharacterized protein LOC100250519 [Vitis vinifera];; (*ITAG) Solyc04g076240.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:58772216-58773532 transcript_region:SL2.40ch04:58772216..58773532- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00007672g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.84|0.78|1|0.76|0.85|14|461|521; (*GB) gi|225458187|ref|XP_002281307.1| (e_value=0.0) PREDICTED: AP-4 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q9JKC7|AP4M1_MOUSE (e_value=9e-84) AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1;; (*TAIR) AT4G24550.2 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr4:12675873-12678903 FORWARD LENGTH=451;; (*ITAG) Solyc04g076230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58763880-58771326 transcript_region:SL2.40ch04:58763880..58771326- go_terms:GO:0008565,GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- D0N5Q6_PHYIN); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0008565,GO:0030276 NbS00031468g0008.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|255548760|ref|XP_002515436.1| (e_value=2e-34) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q04264|PDS5_YEAST (e_value=5e-14) Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1;; (*TAIR) AT4G31880.2 (e_value=1e-35) | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). | chr4:15419435-15423939 REVERSE LENGTH=872;; (*ITAG) Solyc06g065710.2.1 (e_value=2e-45) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00031468g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|376; (*GB) gi|359477376|ref|XP_002280144.2| (e_value=2e-163) PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=7e-98) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=5e-99) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g053850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33208981-33211612 transcript_region:SL2.40ch06:33208981..33211612- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00031468g0013.1 protein AED:0.17 eAED:0.22 QI:63|0.85|0.62|1|0.71|0.87|8|0|328; (*GB) gi|225432886|ref|XP_002280131.1| (e_value=2e-156) PREDICTED: probable alpha-mannosidase I MNS4-like [Vitis vinifera];; (*SWP) sp|Q9FG93|MNS4_ARATH (e_value=2e-149) Probable alpha-mannosidase I MNS4 OS=Arabidopsis thaliana GN=MNS4 PE=2 SV=1;; (*TAIR) AT5G43710.1 (e_value=1e-150) | Symbols: | Glycosyl hydrolase family 47 protein | chr5:17552252-17556523 REVERSE LENGTH=624;; (*ITAG) Solyc06g053860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33212038-33239847 transcript_region:SL2.40ch06:33212038..33239847- go_terms:GO:0051787 functional_description:"Alpha mannosidase-like protein (AHRD V1 ***- B0CY43_LACBS); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0051787 NbS00031468g0007.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|224; (*GB) gi|359477376|ref|XP_002280144.2| (e_value=6e-81) PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera];; (*SWP) sp|Q9LXF2|PP385_ARATH (e_value=3e-35) Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2;; (*TAIR) AT5G15300.1 (e_value=3e-36) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4968384-4970030 REVERSE LENGTH=548;; (*ITAG) Solyc06g053850.2.1 (e_value=7e-114) genomic_reference:SL2.40ch06 gene_region:33208981-33211612 transcript_region:SL2.40ch06:33208981..33211612- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00031468g0012.1 protein AED:0.26 eAED:0.59 QI:0|0|0|1|0|0.5|2|0|97; (*GB) gi|225432886|ref|XP_002280131.1| (e_value=2e-27) PREDICTED: probable alpha-mannosidase I MNS4-like [Vitis vinifera];; (*SWP) sp|Q9FG93|MNS4_ARATH (e_value=7e-29) Probable alpha-mannosidase I MNS4 OS=Arabidopsis thaliana GN=MNS4 PE=2 SV=1;; (*TAIR) AT5G43710.1 (e_value=5e-30) | Symbols: | Glycosyl hydrolase family 47 protein | chr5:17552252-17556523 REVERSE LENGTH=624;; (*ITAG) Solyc06g053860.2.1 (e_value=3e-31) genomic_reference:SL2.40ch06 gene_region:33212038-33239847 transcript_region:SL2.40ch06:33212038..33239847- go_terms:GO:0051787 functional_description:"Alpha mannosidase-like protein (AHRD V1 ***- B0CY43_LACBS); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0051787 NbS00031468g0011.1 protein AED:0.44 eAED:0.80 QI:79|0|0.5|1|1|0.5|2|45|13 NbS00044142g0002.1 protein AED:0.41 eAED:0.41 QI:16|1|0.88|1|1|1|9|442|358; (*GB) gi|225464882|ref|XP_002273260.1| (e_value=1e-165) PREDICTED: nicalin-1 [Vitis vinifera];; (*SWP) sp|Q969V3|NCLN_HUMAN (e_value=3e-47) Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2;; (*TAIR) AT3G44330.1 (e_value=5e-154) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbS00044142g0010.1 protein AED:0.48 eAED:0.57 QI:0|0.5|0.6|1|0.25|0.4|5|0|147; (*GB) gi|171451996|dbj|BAG15862.1| (e_value=6e-50) hypothetical protein [Bruguiera gymnorhiza];; (*TAIR) AT3G44330.1 (e_value=1e-47) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbS00042262g0007.1 protein AED:0.49 eAED:0.60 QI:0|0|0|0.62|0.57|0.75|8|0|407; (*GB) gi|1169228|sp|P46942.1|DB10_NICSY (e_value=5e-123) RecName: Full=ATP-dependent RNA helicase-like protein DB10;; (*SWP) sp|P46942|DB10_NICSY (e_value=7e-135) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G01540.1 (e_value=4e-112) | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=618;; (*ITAG) Solyc12g035130.1.1 (e_value=3e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23233712-23239726 transcript_region:SL2.40ch12:23233712..23239726+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00020853g0008.1 protein AED:0.38 eAED:0.41 QI:0|0.2|0.33|1|0.4|0.33|6|0|282; (*ITAG) Solyc07g007520.1.1 (e_value=7e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:2205648-2206484 transcript_region:SL2.40ch07:2205648..2206484+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020853g0002.1 protein AED:0.25 eAED:0.26 QI:360|0|0.5|1|0|0.5|2|533|203; (*GB) gi|357478385|ref|XP_003609478.1| (e_value=3e-94) hypothetical protein MTR_4g116130 [Medicago truncatula];; (*TAIR) AT2G11890.1 (e_value=7e-67) | Symbols: | adenylate cyclases | chr2:4802999-4803631 FORWARD LENGTH=210;; (*ITAG) Solyc07g007510.2.1 (e_value=6e-128) genomic_reference:SL2.40ch07 gene_region:2201137-2203356 transcript_region:SL2.40ch07:2201137..2203356- go_terms:GO:0006171 functional_description:"Adenylate cyclase (AHRD V1 ***- D7LB43_ARALY); contains Interpro domain(s) IPR008172 Adenylate cyclase "; GO:0006171 NbS00024964g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|225445545|ref|XP_002285295.1| (e_value=0.0) PREDICTED: actin-related protein 6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LGE3|ARP6_ARATH (e_value=0.0) Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1;; (*TAIR) AT3G33520.1 (e_value=0.0) | Symbols: ATARP6, ARP6, SUF3, ESD1 | actin-related protein 6 | chr3:14093791-14095476 REVERSE LENGTH=421;; (*ITAG) Solyc05g018600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22403561-22406376 transcript_region:SL2.40ch05:22403561..22406376- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q0IFH2_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00024964g0003.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|59 NbS00003947g0013.1 protein AED:0.06 eAED:0.06 QI:477|1|0.8|1|0.75|0.6|5|0|136; (*GB) gi|359475590|ref|XP_002264303.2| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100257829 [Vitis vinifera];; (*TAIR) AT5G64460.8 (e_value=4e-71) | Symbols: | Phosphoglycerate mutase family protein | chr5:25773009-25775104 REVERSE LENGTH=282;; (*ITAG) Solyc04g076830.2.1 (e_value=2e-63) genomic_reference:SL2.40ch04 gene_region:59295163-59304028 transcript_region:SL2.40ch04:59295163..59304028- functional_description:"Phosphoglycerate mutase-like protein (AHRD V1 ***- Q8LGT8_SOYBN); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; NbS00003947g0011.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|3|179|339; (*GB) gi|297739757|emb|CBI29939.3| (e_value=2e-149) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FK51|GALT_ARATH (e_value=2e-135) Probable galactose-1-phosphate uridyltransferase OS=Arabidopsis thaliana GN=At5g18200 PE=1 SV=1;; (*TAIR) AT5G18200.1 (e_value=2e-136) | Symbols: | UTP:galactose-1-phosphate uridylyltransferases;ribose-5-phosphate adenylyltransferases | chr5:6015270-6016555 FORWARD LENGTH=351;; (*ITAG) Solyc10g050850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46437650-46445766 transcript_region:SL2.40ch10:46437650..46445766- go_terms:GO:0047345,GO:0017103 functional_description:"Galactose-1-phosphate uridylyltransferase (AHRD V1 **** A5C6V7_VITVI); contains Interpro domain(s) IPR001937 Galactose-1-phosphate uridyl transferase, class I "; GO:0047345,GO:0017103 NbS00003947g0012.1 protein AED:0.34 eAED:0.36 QI:617|0.87|0.88|1|0.81|0.76|17|750|485; (*GB) gi|225441621|ref|XP_002281952.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267624 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=3e-55) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT3G03940.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr3:1014412-1018244 REVERSE LENGTH=701;; (*ITAG) Solyc10g080700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010538g0002.1 protein AED:0.24 eAED:0.24 QI:0|1|0.6|1|1|1|5|614|319; (*ITAG) Solyc01g073870.2.1 (e_value=1e-62) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00010538g0010.1 protein AED:0.74 eAED:0.86 QI:0|0|0|0.6|1|1|5|0|236 NbS00010538g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|147797454|emb|CAN69165.1| (e_value=2e-16) hypothetical protein VITISV_015325 [Vitis vinifera];; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=2e-15) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=1e-16) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc05g009250.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3385767-3387361 transcript_region:SL2.40ch05:3385767..3387361+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 *-*- C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00056339g0007.1 protein AED:0.28 eAED:0.45 QI:36|0.6|0.5|1|0.6|0.66|6|1060|194; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=8e-13) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=6e-14) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=4e-19) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00056339g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|136; (*ITAG) Solyc11g071780.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52235043-52235549 transcript_region:SL2.40ch11:52235043..52235549- functional_description:"Unknown Protein (AHRD V1)"; NbS00040369g0007.1 protein AED:0.03 eAED:0.03 QI:507|1|1|1|0.6|0.66|6|302|207; (*GB) gi|255580884|ref|XP_002531261.1| (e_value=2e-144) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9LFT9|RAH1E_ARATH (e_value=1e-140) Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1;; (*TAIR) AT5G10260.1 (e_value=1e-141) | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog H1E | chr5:3219991-3221301 FORWARD LENGTH=207;; (*ITAG) Solyc03g078570.2.1 (e_value=2e-149) genomic_reference:SL2.40ch03 gene_region:44725181-44727743 transcript_region:SL2.40ch03:44725181..44727743- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-6A (AHRD V1 ***- B6STE7_MAIZE); contains Interpro domain(s) IPR015600 Rab6-related "; GO:0005525,GO:0003924 NbS00040369g0006.1 protein AED:0.24 eAED:0.24 QI:138|0|0|1|0|0.5|2|0|114; (*GB) gi|77999307|gb|ABB17000.1| (e_value=4e-22) ribosomal protein L23 family protein [Solanum tuberosum];; (*ITAG) Solyc11g011140.1.1 (e_value=1e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4216693-4218319 transcript_region:SL2.40ch11:4216693..4218319- go_terms:GO:0005840,GO:0000166 functional_description:"50S ribosomal protein L23 (AHRD V1 *-*- C0N8Z1_9GAMM); contains Interpro domain(s) IPR013025 Ribosomal protein L25/L23 "; GO:0005840,GO:0000166 NbS00029617g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.87|1|1|1|8|0|510; (*GB) gi|255559959|ref|XP_002520998.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G30630.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:13046883-13049106 REVERSE LENGTH=531;; (*ITAG) Solyc06g031670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:17255317-17259513 transcript_region:SL2.40ch06:17255317..17259513+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00029617g0008.1 protein AED:0.34 eAED:0.34 QI:276|0.87|0.88|1|0.75|0.77|9|36|285; (*GB) gi|225430293|ref|XP_002282677.1| (e_value=1e-104) PREDICTED: putative L-ascorbate peroxidase 6 [Vitis vinifera];; (*SWP) sp|Q8GY91|APX6_ARATH (e_value=9e-88) Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1;; (*TAIR) AT4G32320.1 (e_value=7e-89) | Symbols: APX6 | ascorbate peroxidase 6 | chr4:15602777-15605234 FORWARD LENGTH=329;; (*ITAG) Solyc08g059760.2.1 (e_value=9e-146) genomic_reference:SL2.40ch08 gene_region:42440077-42446002 transcript_region:SL2.40ch08:42440077..42446002- go_terms:GO:0004130,GO:0005247 functional_description:"Peroxidase 40 (AHRD V1 **** PER40_ARATH); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0004130,GO:0005247 NbS00010530g0002.1 protein AED:0.02 eAED:0.11 QI:0|0|0|1|1|1|2|0|612; (*GB) gi|255545442|ref|XP_002513781.1| (e_value=3e-127) Nodulation signaling pathway 2 protein, putative [Ricinus communis];; (*SWP) sp|Q5NE24|NSP2_MEDTR (e_value=4e-114) Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1;; (*TAIR) AT4G08250.1 (e_value=2e-85) | Symbols: | GRAS family transcription factor | chr4:5196787-5198238 FORWARD LENGTH=483;; (*ITAG) Solyc11g013150.1.1 (e_value=4e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6017978-6019441 transcript_region:SL2.40ch11:6017978..6019441+ functional_description:"GRAS family transcription factor (AHRD V1 **-- B9H7C5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00010530g0109.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|0|456 NbS00010530g0110.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|90 NbS00003505g0006.1 protein AED:0.10 eAED:0.11 QI:678|0.83|0.84|1|1|1|13|0|1249; (*GB) gi|225423806|ref|XP_002280418.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 9-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SX33|ALA9_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1;; (*TAIR) AT1G68710.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200;; (*ITAG) Solyc04g006940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:625569-631037 transcript_region:SL2.40ch04:625569..631037- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00003505g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|255546925|ref|XP_002514520.1| (e_value=7e-79) Calmodulin, putative [Ricinus communis];; (*SWP) sp|Q9LI84|CML16_ARATH (e_value=2e-76) Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=2;; (*TAIR) AT3G25600.1 (e_value=2e-77) | Symbols: | Calcium-binding EF-hand family protein | chr3:9307367-9307852 FORWARD LENGTH=161;; (*ITAG) Solyc04g006930.2.1 (e_value=7e-85) genomic_reference:SL2.40ch04 gene_region:618400-625090 transcript_region:SL2.40ch04:618400..625090+ go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00027419g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|0.8|0.66|6|306|315; (*GB) gi|255583670|ref|XP_002532589.1| (e_value=1e-105) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G10250.2 (e_value=7e-90) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc01g005640.2.1 (e_value=4e-172) genomic_reference:SL2.40ch01 gene_region:446769-454457 transcript_region:SL2.40ch01:446769..454457+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00027419g0002.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|121 NbC25910930g0002.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|1|0|2|0|215; (*GB) gi|224134703|ref|XP_002327469.1| (e_value=6e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02700.1 (e_value=2e-35) | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252;; (*ITAG) Solyc02g081580.2.1 (e_value=5e-60) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00048470g0001.1 protein AED:0.11 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|684; (*GB) gi|225448505|ref|XP_002272996.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=4e-109) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=3e-110) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc06g051090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:30698443-30700131 transcript_region:SL2.40ch06:30698443..30700131- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00048470g0005.1 protein AED:0.30 eAED:0.37 QI:232|0.88|0.84|1|0.77|0.78|19|0|1002; (*GB) gi|225448507|ref|XP_002273020.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera];; (*TAIR) AT3G56040.1 (e_value=0.0) | Symbols: UGP3 | UDP-glucose pyrophosphorylase 3 | chr3:20792689-20797482 REVERSE LENGTH=883;; (*ITAG) Solyc06g051080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30687110-30697786 transcript_region:SL2.40ch06:30687110..30697786+ functional_description:"UDP-sugar pyrophosphorylase (AHRD V1 *--- USP_ORYSI)"; NbS00033783g0002.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|3|0|663; (*GB) gi|350539361|ref|NP_001233877.1| (e_value=0.0) receptor-like protein kinase precursor [Solanum lycopersicum];; (*SWP) sp|C0LGU0|RLK_ARATH (e_value=9e-170) Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1;; (*TAIR) AT5G35390.1 (e_value=7e-171) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:13596918-13598976 FORWARD LENGTH=662;; (*ITAG) Solyc07g017230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6545383-6548769 transcript_region:SL2.40ch07:6545383..6548769+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00033783g0009.1 protein AED:0.27 eAED:0.27 QI:364|1|1|1|0.66|0.7|10|574|381; (*GB) gi|359474454|ref|XP_002275354.2| (e_value=2e-156) PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera];; (*SWP) sp|B5RQJ5|TRUA_BORRA (e_value=3e-15) tRNA pseudouridine synthase A OS=Borrelia recurrentis (strain A1) GN=truA PE=3 SV=1;; (*TAIR) AT5G35400.1 (e_value=3e-131) | Symbols: | Pseudouridine synthase family protein | chr5:13599416-13602240 REVERSE LENGTH=420;; (*ITAG) Solyc07g017250.2.1 (e_value=5e-93) genomic_reference:SL2.40ch07 gene_region:6574501-6581341 transcript_region:SL2.40ch07:6574501..6581341- go_terms:GO:0009451 functional_description:"Pseudouridine synthase (AHRD V1 ***- B9N838_POPTR); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009451 NbS00047975g0005.1 protein AED:0.10 eAED:0.13 QI:54|0.8|0.56|1|0.66|0.43|16|300|618; (*GB) gi|356576819|ref|XP_003556527.1| (e_value=0.0) PREDICTED: topless-related protein 3-like [Glycine max];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=0.0) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=0.0) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00015610g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|0|0|2|0|578; (*GB) gi|328497227|dbj|BAK18780.1| (e_value=0.0) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P93479|RETO_PAPSO (e_value=2e-139) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT5G44380.1 (e_value=1e-115) | Symbols: | FAD-binding Berberine family protein | chr5:17878873-17881369 REVERSE LENGTH=541;; (*ITAG) Solyc04g080400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00021807g0006.1 protein AED:0.09 eAED:0.10 QI:0|1|0.33|1|0|0.66|3|61|317; (*GB) gi|225428845|ref|XP_002282369.1| (e_value=9e-79) PREDICTED: transcription factor bHLH95 [Vitis vinifera];; (*SWP) sp|Q9FXA3|BH095_ARATH (e_value=1e-38) Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2;; (*TAIR) AT1G49770.1 (e_value=7e-40) | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18424578-18426531 FORWARD LENGTH=308;; (*ITAG) Solyc01g107950.1.1 (e_value=3e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87091511-87094312 transcript_region:SL2.40ch01:87091511..87094312+ go_terms:GO:0030528 functional_description:"Transcription factor bHLH95 (AHRD V1 *-** BH095_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00021807g0008.1 protein AED:0.77 eAED:0.77 QI:0|0.25|0|0.4|1|0.8|5|0|211; (*GB) gi|224060497|ref|XP_002300224.1| (e_value=4e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT4G34040.1 (e_value=9e-45) | Symbols: | RING/U-box superfamily protein | chr4:16304638-16307503 REVERSE LENGTH=666;; (*ITAG) Solyc01g107940.2.1 (e_value=3e-73) genomic_reference:SL2.40ch01 gene_region:87081969-87086437 transcript_region:SL2.40ch01:87081969..87086437+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021807g0010.1 protein AED:0.23 eAED:0.45 QI:0|0|0|1|0|0|3|0|183; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-14) hypothetical protein [Nicotiana tabacum]; NbS00033952g0003.1 protein AED:0.20 eAED:0.20 QI:265|1|0.5|1|0|0|2|0|359; (*GB) gi|350535124|ref|NP_001234689.1| (e_value=2e-80) dehydration responsive element binding protein [Solanum lycopersicum];; (*SWP) sp|Q8LFR2|DRE2C_ARATH (e_value=2e-36) Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2;; (*TAIR) AT2G40340.1 (e_value=1e-37) | Symbols: DREB2C, AtERF48 | Integrase-type DNA-binding superfamily protein | chr2:16848665-16850357 REVERSE LENGTH=341;; (*ITAG) Solyc06g050520.1.1 (e_value=4e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:29703325-29704227 transcript_region:SL2.40ch06:29703325..29704227- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00027640g0007.1 protein AED:0.42 eAED:0.89 QI:0|0|0|1|1|1|2|0|107 NbS00027640g0008.1 protein AED:0.24 eAED:0.24 QI:27|0.83|0.85|0.85|0.83|0.85|7|0|323; (*GB) gi|38488409|emb|CAE55204.1| (e_value=4e-151) protein kinase 2 [Nicotiana tabacum];; (*SWP) sp|P93749|Y2197_ARATH (e_value=2e-138) Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1;; (*TAIR) AT2G41970.1 (e_value=1e-139) | Symbols: | Protein kinase superfamily protein | chr2:17520517-17522304 REVERSE LENGTH=365;; (*ITAG) Solyc09g090210.2.1 (e_value=9e-153) genomic_reference:SL2.40ch09 gene_region:65114894-65117600 transcript_region:SL2.40ch09:65114894..65117600- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** C6ZRT7_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00010399g0004.1 protein AED:0.50 eAED:0.68 QI:0|0|0|0.66|1|1|3|0|104 NbS00010399g0101.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|1|1|3|0|561 NbS00010399g0124.1 protein AED:0.06 eAED:0.08 QI:0|0|0|0.6|1|0.9|10|0|1438 NbS00010399g0122.1 protein AED:0.08 eAED:0.12 QI:0|0.28|0.37|1|0.28|0.12|8|0|739 NbS00010399g0120.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|0.66|3|0|818 NbS00010399g0123.1 protein AED:0.25 eAED:0.25 QI:29|0.71|0.62|1|0.42|0.5|8|248|174 NbS00044784g0003.1 protein AED:0.08 eAED:0.08 QI:170|1|0.83|1|1|1|6|0|426; (*GB) gi|359489162|ref|XP_002265726.2| (e_value=0.0) PREDICTED: protein SCAI homolog [Vitis vinifera];; (*SWP) sp|Q8C8N2|SCAI_MOUSE (e_value=1e-61) Protein SCAI OS=Mus musculus GN=Scai PE=1 SV=2;; (*TAIR) AT3G03570.1 (e_value=3e-179) | Symbols: | Protein of unknown function (DUF3550/UPF0682) | chr3:857013-860105 FORWARD LENGTH=607;; (*ITAG) Solyc01g081030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72838886-72849697 transcript_region:SL2.40ch01:72838886..72849697- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_MOUSE)"; GO:0003714 NbS00004045g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|255562974|ref|XP_002522492.1| (e_value=5e-75) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G26650.1 (e_value=1e-74) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9210335-9211342 FORWARD LENGTH=335;; (*ITAG) Solyc01g010990.2.1 (e_value=2e-108) genomic_reference:SL2.40ch01 gene_region:6840132-6841662 transcript_region:SL2.40ch01:6840132..6841662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004045g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|255562974|ref|XP_002522492.1| (e_value=5e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G69430.1 (e_value=1e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits to 215 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26098025-26099077 FORWARD LENGTH=350;; (*ITAG) Solyc01g010990.2.1 (e_value=3e-45) genomic_reference:SL2.40ch01 gene_region:6840132-6841662 transcript_region:SL2.40ch01:6840132..6841662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004045g0008.1 protein AED:0.24 eAED:0.24 QI:344|1|0.75|1|1|1|4|0|532; (*GB) gi|4322940|gb|AAD16139.1| (e_value=0.0) DNA-binding protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=9e-134) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=7e-135) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g012770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5928753-5934454 transcript_region:SL2.40ch05:5928753..5934454+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00004045g0101.1 protein AED:0.24 eAED:0.24 QI:213|1|0.8|1|1|1|5|0|159 NbS00004045g0202.1 protein AED:0.17 eAED:0.17 QI:343|1|0.5|1|0|0|2|0|267 NbS00004045g0212.1 protein AED:0.20 eAED:0.20 QI:224|0.83|0.71|1|0.5|0.42|7|0|935 NbS00004045g0215.1 protein AED:0.27 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|181 NbS00004045g0216.1 protein AED:0.17 eAED:0.17 QI:237|0.9|0.90|1|0.7|0.81|11|316|319 NbS00004045g0217.1 protein AED:0.03 eAED:0.07 QI:10|0|0|1|0|0|2|0|336 NbS00036446g0004.1 protein AED:0.04 eAED:0.04 QI:141|1|0.5|1|0|0|2|0|354; (*GB) gi|225438797|ref|XP_002283187.1| (e_value=2e-159) PREDICTED: uncharacterized protein LOC100259508 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=9e-147) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc02g093090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48596619-48597545 transcript_region:SL2.40ch02:48596619..48597545- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00053231g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|442; (*GB) gi|225465522|ref|XP_002273178.1| (e_value=0.0) PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Vitis vinifera];; (*SWP) sp|Q8W1D5|CIPKP_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 25 OS=Arabidopsis thaliana GN=CIPK25 PE=2 SV=1;; (*TAIR) AT5G25110.1 (e_value=0.0) | Symbols: CIPK25, SnRK3.25 | CBL-interacting protein kinase 25 | chr5:8657740-8659206 REVERSE LENGTH=488;; (*ITAG) Solyc06g068450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38807866-38809185 transcript_region:SL2.40ch06:38807866..38809185- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase (AHRD V1 **** A5YAI9_GOSHI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00014424g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|255583978|ref|XP_002532735.1| (e_value=7e-50) hypothetical protein RCOM_1749890 [Ricinus communis];; (*TAIR) AT3G25130.1 (e_value=2e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc09g059550.1.1 (e_value=8e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50445438-50446517 transcript_region:SL2.40ch09:50445438..50446517+ functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00011906g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.80|0.59|1|0.71|0.72|22|0|1238; (*GB) gi|359486189|ref|XP_002267256.2| (e_value=0.0) PREDICTED: RRP12-like protein-like [Vitis vinifera];; (*SWP) sp|Q5ZKD5|RRP12_CHICK (e_value=4e-80) RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1;; (*TAIR) AT2G34357.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280;; (*ITAG) Solyc07g042380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52832624-52846801 transcript_region:SL2.40ch07:52832624..52846801- go_terms:GO:0005488 functional_description:"Ribosomal RNA processing protein (AHRD V1 *--- A6ZWN4_YEAS7); contains Interpro domain(s) IPR012978 Region of unknown function, NUC173 "; GO:0005488 NbS00011906g0010.1 protein AED:0.24 eAED:0.24 QI:321|1|1|1|0.76|0.78|14|515|494; (*GB) gi|2921211|gb|AAC04692.1| (e_value=0.0) beta-ketoacyl-ACP synthase II [Perilla frutescens];; (*SWP) sp|Q9C9P4|KASC2_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1;; (*TAIR) AT1G74960.3 (e_value=0.0) | Symbols: FAB1 | fatty acid biosynthesis 1 | chr1:28152564-28155948 REVERSE LENGTH=541;; (*ITAG) Solyc03g122120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64122687-64128467 transcript_region:SL2.40ch03:64122687..64128467- go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase 2 (AHRD V1 **** D0ZZB8_CHLPP); contains Interpro domain(s) IPR000794 Beta-ketoacyl synthase "; GO:0005515,GO:0004315 NbS00013159g0005.1 protein AED:0.40 eAED:0.92 QI:0|0.25|0.2|1|0.75|0.8|5|28|611; (*GB) gi|224097562|ref|XP_002310987.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g012660.1.1 (e_value=6e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10555142-10556635 transcript_region:SL2.40ch00:10555142..10556635- functional_description:"F-box domain containing protein (AHRD V1 ***- B6UBC8_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00013159g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.5|0.83|0.8|0.66|6|0|203; (*GB) gi|224104109|ref|XP_002333983.1| (e_value=8e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q63184|E2AK2_RAT (e_value=1e-27) Interferon-induced, double-stranded RNA-activated protein kinase OS=Rattus norvegicus GN=Eif2ak2 PE=1 SV=1;; (*TAIR) AT3G59410.2 (e_value=2e-28) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1265;; (*ITAG) Solyc03g059250.2.1 (e_value=6e-16) genomic_reference:SL2.40ch03 gene_region:25551514-25557664 transcript_region:SL2.40ch03:25551514..25557664+ go_terms:GO:0004711 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00002331g0005.1 protein AED:0.28 eAED:0.28 QI:119|1|0.5|1|1|1|2|0|260; (*GB) gi|350539037|ref|NP_001234115.1| (e_value=1e-174) 60S ribosomal protein L8 [Solanum lycopersicum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=3e-176) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=3e-167) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc10g006580.2.1 (e_value=2e-177) genomic_reference:SL2.40ch10 gene_region:1125825-1127897 transcript_region:SL2.40ch10:1125825..1127897- go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00002331g0106.1 protein AED:0.50 eAED:0.58 QI:0|0|0|1|0.75|0.6|5|0|194 NbS00002331g0105.1 protein AED:0.00 eAED:0.00 QI:101|1|1|1|0|0|2|199|160 NbS00005486g0011.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|210; (*GB) gi|224137114|ref|XP_002327025.1| (e_value=2e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|O80513|CCU41_ARATH (e_value=4e-93) Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1;; (*TAIR) AT2G44740.1 (e_value=3e-94) | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-18443304 REVERSE LENGTH=202;; (*ITAG) Solyc01g089850.2.1 (e_value=7e-126) genomic_reference:SL2.40ch01 gene_region:75337760-75340187 transcript_region:SL2.40ch01:75337760..75340187- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator Pho80 (AHRD V1 **** B6QI37_PENMQ); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00005486g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|2|0|558; (*GB) gi|310877800|gb|ADP37131.1| (e_value=0.0) putative hexose transporter [Vitis vinifera];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc03g006650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1229172-1231694 transcript_region:SL2.40ch03:1229172..1231694+ go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 5 (AHRD V1 ***- GTR5_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00005486g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|334; (*GB) gi|224137110|ref|XP_002327024.1| (e_value=1e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT2G44730.1 (e_value=9e-59) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr2:18437447-18438565 REVERSE LENGTH=372;; (*ITAG) Solyc01g088820.2.1 (e_value=7e-157) genomic_reference:SL2.40ch01 gene_region:75309408-75310668 transcript_region:SL2.40ch01:75309408..75310668+ functional_description:"Transcription factor (AHRD V1 **-- D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00005486g0012.1 protein AED:0.24 eAED:0.32 QI:0|0|0|1|0.2|0|6|0|764; (*GB) gi|359490025|ref|XP_003634016.1| (e_value=1e-66) PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera];; (*TAIR) AT5G51160.1 (e_value=7e-36) | Symbols: | Ankyrin repeat family protein | chr5:20792280-20793681 FORWARD LENGTH=442;; (*ITAG) Solyc01g088830.2.1 (e_value=2e-158) genomic_reference:SL2.40ch01 gene_region:75314919-75316502 transcript_region:SL2.40ch01:75314919..75316502+ go_terms:GO:0030506 functional_description:"Ankyrin repeat protein (AHRD V1 **** B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00005558g0002.1 protein AED:0.14 eAED:0.14 QI:41|0.8|0.83|1|0.6|0.5|6|0|543; (*GB) gi|28273100|dbj|BAC56916.1| (e_value=0.0) nitrate transporter [Nicotiana tabacum];; (*SWP) sp|Q05085|PTR7_ARATH (e_value=0.0) Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1;; (*TAIR) AT1G12110.1 (e_value=0.0) | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | nitrate transporter 1.1 | chr1:4105341-4109290 FORWARD LENGTH=590;; (*ITAG) Solyc08g007430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1993266-1997895 transcript_region:SL2.40ch08:1993266..1997895+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q852P5_TOBAC); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00010837g0012.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|65 NbS00010837g0016.1 protein AED:0.13 eAED:0.18 QI:261|0|0.5|1|0|0|2|0|76; (*GB) gi|90654968|gb|ABD96083.1| (e_value=3e-15) hypothetical protein [Nicotiana tabacum];; (*ITAG) Solyc06g066050.2.1 (e_value=2e-19) genomic_reference:SL2.40ch06 gene_region:37790193-37796082 transcript_region:SL2.40ch06:37790193..37796082- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00010837g0015.1 protein AED:0.23 eAED:0.23 QI:491|0.87|0.77|1|0.75|0.66|9|0|476; (*GB) gi|225430291|ref|XP_002285138.1| (e_value=1e-91) PREDICTED: uncharacterized protein LOC100244101 [Vitis vinifera];; (*TAIR) AT4G32330.2 (e_value=5e-60) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr4:15609801-15611867 FORWARD LENGTH=436;; (*ITAG) Solyc06g066030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37775846-37781482 transcript_region:SL2.40ch06:37775846..37781482+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00010837g0006.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|80 NbS00013068g0005.1 protein AED:0.44 eAED:0.55 QI:149|0|0.33|0.66|0|0|3|0|69 NbS00013068g0004.1 protein AED:0.28 eAED:0.28 QI:84|1|0.75|1|1|0.75|4|0|245; (*GB) gi|225435692|ref|XP_002283435.1| (e_value=4e-77) PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q5KR61|PIGV_RAT (e_value=5e-13) GPI mannosyltransferase 2 OS=Rattus norvegicus GN=Pigv PE=2 SV=1;; (*TAIR) AT1G11880.1 (e_value=2e-66) | Symbols: | transferases, transferring hexosyl groups | chr1:4007909-4010327 REVERSE LENGTH=489;; (*ITAG) Solyc01g006000.2.1 (e_value=3e-104) genomic_reference:SL2.40ch01 gene_region:663324-669843 transcript_region:SL2.40ch01:663324..669843+ go_terms:GO:0000030 functional_description:"GPI mannosyltransferase 2 (AHRD V1 **** A8N6M5_COPC7); contains Interpro domain(s) IPR007315 Mannosyltransferase, PIG-V "; GO:0000030 NbS00057691g0008.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.6|0.25|0.2|5|0|310; (*GB) gi|47825035|gb|AAT38805.1| (e_value=6e-17) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc03g093900.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00057691g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.75|0.8|5|373|151; (*GB) gi|82621170|gb|ABB86273.1| (e_value=6e-106) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=6e-104) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=2e-101) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=1e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbC24669507g0001.1 protein AED:0.15 eAED:0.24 QI:72|-1|0|1|-1|1|1|0|53; (*GB) gi|388516471|gb|AFK46297.1| (e_value=2e-21) unknown [Medicago truncatula];; (*TAIR) AT5G15900.1 (e_value=3e-18) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=1e-26) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00048070g0004.1 protein AED:0.05 eAED:0.12 QI:442|0|0.66|1|0|0|3|451|117; (*GB) gi|224118284|ref|XP_002331444.1| (e_value=5e-37) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9ZUU9|AB3G_ARATH (e_value=8e-37) ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2;; (*TAIR) AT2G28070.1 (e_value=6e-38) | Symbols: | ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730;; (*ITAG) Solyc11g069710.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51394342-51402692 transcript_region:SL2.40ch11:51394342..51402692- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 3 (AHRD V1 ***- AB3G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00010153g0004.1 protein AED:0.02 eAED:0.02 QI:137|0.84|0.85|1|0.84|0.85|14|380|476; (*GB) gi|297734911|emb|CBI17145.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28130.1 (e_value=3e-145) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11988823-11991397 FORWARD LENGTH=458;; (*ITAG) Solyc11g066340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49167159-49175841 transcript_region:SL2.40ch11:49167159..49175841+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002437g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|434; (*GB) gi|302399043|gb|ADL36816.1| (e_value=0.0) SCL domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9FHZ1|SCL23_ARATH (e_value=1e-155) Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1;; (*TAIR) AT5G41920.1 (e_value=9e-157) | Symbols: | GRAS family transcription factor | chr5:16779982-16781199 FORWARD LENGTH=405;; (*ITAG) Solyc07g043330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54355933-54357231 transcript_region:SL2.40ch07:54355933..54357231- go_terms:GO:0042803 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IHC5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0042803 NbS00002437g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.4|0.33|0.83|0.6|0.5|6|0|1286; (*GB) gi|147862641|emb|CAN81488.1| (e_value=0.0) hypothetical protein VITISV_033286 [Vitis vinifera];; (*TAIR) AT2G32240.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333;; (*ITAG) Solyc07g043320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbS00003097g0018.1 protein AED:0.09 eAED:0.11 QI:0|0|0.33|1|1|0.66|3|0|190; (*GB) gi|225430694|ref|XP_002263902.1| (e_value=5e-42) PREDICTED: dolichyldiphosphatase 1 [Vitis vinifera];; (*TAIR) AT5G66450.1 (e_value=8e-37) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr5:26534801-26535951 FORWARD LENGTH=286;; (*ITAG) Solyc02g084970.2.1 (e_value=9e-74) genomic_reference:SL2.40ch02 gene_region:42585594-42587453 transcript_region:SL2.40ch02:42585594..42587453+ go_terms:GO:0016020 functional_description:"PAP2 domain protein (AHRD V1 *--- B6Q1Y8_PENMQ); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020 NbS00003097g0015.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|0|0|2|0|61 NbS00003097g0004.1 protein AED:0.13 eAED:0.18 QI:0|1|0.5|1|0|0|2|401|283; (*GB) gi|356518651|ref|XP_003527992.1| (e_value=9e-54) PREDICTED: U-box domain-containing protein 43-like [Glycine max];; (*ITAG) Solyc03g082690.2.1 (e_value=2e-119) genomic_reference:SL2.40ch03 gene_region:46158633-46163437 transcript_region:SL2.40ch03:46158633..46163437+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00003097g0019.1 protein AED:0.09 eAED:0.09 QI:223|1|1|1|0|0.5|2|257|133; (*GB) gi|307135877|gb|ADN33743.1| (e_value=3e-60) hypothetical protein [Cucumis melo subsp. melo];; (*TAIR) AT4G22000.1 (e_value=3e-54) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659810-11660202 REVERSE LENGTH=130;; (*ITAG) Solyc12g042700.1.1 (e_value=3e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43507878-43509860 transcript_region:SL2.40ch12:43507878..43509860+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003097g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|86|251; (*GB) gi|225430692|ref|XP_002265924.1| (e_value=4e-44) PREDICTED: uncharacterized protein LOC100263337 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=7e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc02g084960.1.1 (e_value=2e-111) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:42572352-42573101 transcript_region:SL2.40ch02:42572352..42573101- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00027297g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.76|0.72|0.88|0.94|0.88|18|680|732; (*GB) gi|225462440|ref|XP_002264614.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase BSL3-like [Vitis vinifera];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc06g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00027297g0014.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-27) hypothetical protein [Nicotiana tabacum]; NbS00027297g0015.1 protein AED:0.32 eAED:0.54 QI:0|0.66|0.25|1|1|1|4|41|293; (*GB) gi|365222948|gb|AEW69826.1| (e_value=9e-96) Hop-interacting protein THI140 [Solanum lycopersicum];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=8e-96) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.2 (e_value=5e-97) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1001;; (*ITAG) Solyc06g073960.2.1 (e_value=2e-117) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00046172g0003.1 protein AED:0.01 eAED:0.01 QI:50|1|1|1|0.5|0.66|3|56|319; (*GB) gi|225468618|ref|XP_002266049.1| (e_value=2e-120) PREDICTED: uncharacterized protein LOC100245492 [Vitis vinifera];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=3e-69) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=1e-103) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc10g005460.2.1 (e_value=1e-145) genomic_reference:SL2.40ch10 gene_region:337760-339411 transcript_region:SL2.40ch10:337760..339411- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00043488g0011.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|590; (*GB) gi|225444375|ref|XP_002264956.1| (e_value=4e-176) PREDICTED: pentatricopeptide repeat-containing protein At4g21170-like [Vitis vinifera];; (*SWP) sp|O49558|PP331_ARATH (e_value=1e-99) Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=2 SV=2;; (*TAIR) AT4G21170.1 (e_value=9e-82) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11286756-11288513 REVERSE LENGTH=551;; (*ITAG) Solyc02g080170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39049493-39051247 transcript_region:SL2.40ch02:39049493..39051247+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00043488g0010.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|98 NbS00043488g0009.1 protein AED:0.04 eAED:0.21 QI:0|0|0|1|0|0|3|0|369; (*GB) gi|297840375|ref|XP_002888069.1| (e_value=2e-82) OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G61790.1 (e_value=6e-85) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc02g080180.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39052203-39053231 transcript_region:SL2.40ch02:39052203..39053231+ go_terms:GO:0015157 functional_description:"Oligosaccharide transporter (AHRD V1 **-* B4FSV8_MAIZE); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00021629g0007.1 protein AED:0.03 eAED:0.03 QI:119|1|1|1|0.75|0.6|5|250|270; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=2e-149) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q40746|NIP11_ORYSJ (e_value=4e-130) Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1;; (*TAIR) AT4G18910.1 (e_value=2e-128) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc03g005980.2.1 (e_value=2e-173) genomic_reference:SL2.40ch03 gene_region:659208-662352 transcript_region:SL2.40ch03:659208..662352- go_terms:GO:0015250 functional_description:"Transmembrane water channel aquaporin Z (AHRD V1 **** Q3KGD7_PSEPF); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00016443g0021.1 protein AED:0.16 eAED:0.16 QI:324|0.90|1|1|0.63|0.5|12|191|462; (*GB) gi|255549968|ref|XP_002516035.1| (e_value=6e-140) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25737.1 (e_value=7e-118) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc03g120730.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:63072823-63076833 transcript_region:SL2.40ch03:63072823..63076833- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00016443g0020.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0|1|0.33|0|4|0|243; (*GB) gi|297839945|ref|XP_002887854.1| (e_value=3e-79) ATMBAC2/BAC2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q08DK7|MCATL_BOVIN (e_value=1e-19) Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Bos taurus GN=SLC25A29 PE=2 SV=1;; (*TAIR) AT1G79900.1 (e_value=3e-81) | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate carrier family protein | chr1:30052524-30053599 REVERSE LENGTH=296;; (*ITAG) Solyc06g066680.2.1 (e_value=1e-91) genomic_reference:SL2.40ch06 gene_region:38284835-38287950 transcript_region:SL2.40ch06:38284835..38287950- go_terms:GO:0015227 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- D2VIZ2_NAEGR); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015227 NbS00016443g0011.1 protein AED:0.59 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|129; (*ITAG) Solyc06g066700.1.1 (e_value=7e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:38298593-38298841 transcript_region:SL2.40ch06:38298593..38298841- functional_description:"Unknown Protein (AHRD V1)"; NbS00016443g0001.1 protein AED:0.07 eAED:0.08 QI:0|0.75|0.6|1|1|1|5|0|344; (*GB) gi|297743283|emb|CBI36150.3| (e_value=3e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G79910.1 (e_value=2e-54) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:30055050-30057011 FORWARD LENGTH=381;; (*ITAG) Solyc06g066690.2.1 (e_value=8e-137) genomic_reference:SL2.40ch06 gene_region:38295475-38298302 transcript_region:SL2.40ch06:38295475..38298302+ functional_description:"IST1 homolog (AHRD V1 *--- D3PJN2_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00016443g0023.1 protein AED:0.16 eAED:0.17 QI:0|0.87|0.88|1|0.87|0.88|9|0|1052; (*GB) gi|224059074|ref|XP_002299703.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6AXC6|DDX11_MOUSE (e_value=4e-120) Probable ATP-dependent RNA helicase DDX11 OS=Mus musculus GN=Ddx11 PE=2 SV=1;; (*TAIR) AT1G79890.1 (e_value=0.0) | Symbols: | RAD3-like DNA-binding helicase protein | chr1:30048655-30052203 FORWARD LENGTH=882;; (*ITAG) Solyc06g066670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38277655-38284362 transcript_region:SL2.40ch06:38277655..38284362+ go_terms:GO:0043141 functional_description:"ATP-dependent DNA helicase Ta0057 (AHRD V1 *-** XPD_THEAC); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type "; GO:0043141 NbS00033167g0002.1 protein AED:0.10 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|584; (*GB) gi|224095345|ref|XP_002310379.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43990.1 (e_value=6e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; Has 1419 Blast hits to 494 proteins in 144 species: Archae - 0; Bacteria - 300; Metazoa - 246; Fungi - 102; Plants - 31; Viruses - 2; Other Eukaryotes - 738 (source: NCBI BLink). | chr2:18211974-18213872 FORWARD LENGTH=632;; (*ITAG) Solyc12g017970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:8882121-8883986 transcript_region:SL2.40ch12:8882121..8883986- functional_description:"Unknown Protein (AHRD V1)"; NbS00031175g0008.1 protein AED:0.13 eAED:0.15 QI:612|1|0.5|1|1|1|2|0|749; (*GB) gi|224140605|ref|XP_002323672.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=2e-141) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc09g015520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:9621116-9624602 transcript_region:SL2.40ch09:9621116..9624602+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00031175g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|356507516|ref|XP_003522510.1| (e_value=3e-122) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=7e-71) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=2e-112) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc09g015520.2.1 (e_value=1e-145) genomic_reference:SL2.40ch09 gene_region:9621116-9624602 transcript_region:SL2.40ch09:9621116..9624602+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018583g0001.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|255549026|ref|XP_002515569.1| (e_value=0.0) Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=2e-76) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT1G03390.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:841033-842418 REVERSE LENGTH=461;; (*ITAG) Solyc08g013830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3177094-3178440 transcript_region:SL2.40ch08:3177094..3178440+ go_terms:GO:0050734,GO:0010327 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0050734,GO:0010327 NbS00018583g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.88|1|1|9|0|423; (*GB) gi|350534564|ref|NP_001234147.1| (e_value=0.0) 26S protease regulatory subunit 6A homolog [Solanum lycopersicum];; (*SWP) sp|P54776|PRS6A_SOLLC (e_value=0.0) 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1;; (*TAIR) AT3G05530.1 (e_value=0.0) | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A ATPase 5A | chr3:1603540-1605993 FORWARD LENGTH=424;; (*ITAG) Solyc01g099760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81668247-81673265 transcript_region:SL2.40ch01:81668247..81673265+ go_terms:GO:0004175 functional_description:"26S protease regulatory subunit 6A homolog (AHRD V1 ***- PRS6A_SOLLC); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0004175 NbS00024310g0007.1 protein AED:0.07 eAED:0.08 QI:0|0.63|0.5|0.91|0.54|0.41|12|0|724; (*GB) gi|350539537|ref|NP_001234176.1| (e_value=4e-155) PI-phospholipase C PLC5 [Solanum lycopersicum];; (*SWP) sp|Q8GV43|PLCD6_ARATH (e_value=3e-136) Phosphoinositide phospholipase C 6 OS=Arabidopsis thaliana GN=PLC6 PE=2 SV=2;; (*TAIR) AT2G40116.1 (e_value=2e-137) | Symbols: | Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613;; (*ITAG) Solyc03g096070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51366833-51373415 transcript_region:SL2.40ch03:51366833..51373415- go_terms:GO:0004629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (Phosphoinositide-specific phospholipase c) (AHRD V1 *-** O49950_SOLTU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0004629 NbS00024310g0002.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0|1|1|1|3|0|315; (*GB) gi|225448451|ref|XP_002272995.1| (e_value=1e-152) PREDICTED: leucoanthocyanidin dioxygenase [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=6e-60) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT5G05600.1 (e_value=1e-144) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc03g096050.2.1 (e_value=3e-169) genomic_reference:SL2.40ch03 gene_region:51317291-51320454 transcript_region:SL2.40ch03:51317291..51320454+ go_terms:GO:0016706,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-* ACCO1_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0009815 NbS00059394g0002.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|0|0|2|0|88 NbS00010191g0015.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.25|1|0.33|0.25|4|0|452; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-170) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=2e-171) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc10g083750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62830767-62834436 transcript_region:SL2.40ch10:62830767..62834436- go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00010191g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0|0.5|0.33|0.5|4|0|145 NbS00023115g0005.1 protein AED:0.12 eAED:0.17 QI:0|0.4|0.27|1|0.1|0.36|11|0|547; (*GB) gi|147858794|emb|CAN78702.1| (e_value=6e-80) hypothetical protein VITISV_034263 [Vitis vinifera];; (*SWP) sp|Q1PFW3|CCSDS_ARATH (e_value=2e-57) Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2;; (*TAIR) AT1G14750.1 (e_value=1e-58) | Symbols: SDS | Cyclin family protein | chr1:5079674-5082423 REVERSE LENGTH=578;; (*ITAG) Solyc04g008070.1.1 (e_value=4e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00023115g0004.1 protein AED:0.01 eAED:0.01 QI:70|1|1|1|0|0|4|293|217; (*GB) gi|297737601|emb|CBI26802.3| (e_value=3e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01818.1 (e_value=2e-59) | Symbols: | PLATZ transcription factor family protein | chr2:353552-355370 REVERSE LENGTH=222;; (*ITAG) Solyc04g008090.2.1 (e_value=5e-122) genomic_reference:SL2.40ch04 gene_region:1744812-1747910 transcript_region:SL2.40ch04:1744812..1747910- go_terms:GO:0008270 functional_description:"Zinc-binding protein (AHRD V1 **-* Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0008270 NbS00023115g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|0|0.5|2|0|116; (*GB) gi|47825035|gb|AAT38805.1| (e_value=8e-27) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc01g056420.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47014669-47015578 transcript_region:SL2.40ch01:47014669..47015578- go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00023115g0006.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|0.33|0.5|4|0|147; (*ITAG) Solyc02g010630.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:4132750-4133091 transcript_region:SL2.40ch02:4132750..4133091- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00017669g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.88|0.8|1|0.55|0.6|10|205|411; (*GB) gi|255574357|ref|XP_002528092.1| (e_value=2e-105) ubiquitin-protein ligase, putative [Ricinus communis];; (*TAIR) AT5G01450.1 (e_value=3e-68) | Symbols: | RING/U-box superfamily protein | chr5:183693-186244 REVERSE LENGTH=444;; (*ITAG) Solyc09g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:245604-252638 transcript_region:SL2.40ch09:245604..252638+ go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RNF34 (AHRD V1 *--- C0H8Z5_SALSA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbC25797382g0001.1 protein AED:0.02 eAED:0.02 QI:278|1|1|1|0|0|2|0|82; (*GB) gi|297744471|emb|CBI37733.3| (e_value=3e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2QWW7|PHT47_ORYSJ (e_value=2e-40) Probable anion transporter 7 OS=Oryza sativa subsp. japonica GN=PHT4;7 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=2e-41) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=5e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00027653g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|116; (*ITAG) Solyc07g017820.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8144093-8144446 transcript_region:SL2.40ch07:8144093..8144446- functional_description:"Unknown Protein (AHRD V1)"; NbS00027653g0006.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.83|0.71|7|287|358; (*GB) gi|4160298|emb|CAA09852.1| (e_value=1e-155) cyclin D2.1 protein [Nicotiana tabacum];; (*SWP) sp|Q8LGA1|CCD41_ARATH (e_value=4e-89) Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2;; (*TAIR) AT5G65420.1 (e_value=3e-90) | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308;; (*ITAG) Solyc11g010460.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3514298-3516600 transcript_region:SL2.40ch11:3514298..3516600- go_terms:GO:0005634 functional_description:"Cyclin D2 (AHRD V1 ***- Q8L6U0_DAUCA); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005634 NbS00005661g0003.1 protein AED:0.00 eAED:0.00 QI:306|1|1|1|0.5|0.33|3|426|874; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=0.0) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=0.0) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT3G08947.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00008706g0022.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|3|133|275; (*GB) gi|255541970|ref|XP_002512049.1| (e_value=6e-77) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G17390.1 (e_value=2e-55) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:5727640-5728688 FORWARD LENGTH=285;; (*ITAG) Solyc03g114820.2.1 (e_value=1e-134) genomic_reference:SL2.40ch03 gene_region:58747889-58749771 transcript_region:SL2.40ch03:58747889..58749771- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KWY1_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00008706g0032.1 protein AED:0.07 eAED:0.13 QI:212|0.66|0.75|1|0.66|0.5|4|0|226; (*ITAG) Solyc03g114750.2.1 (e_value=3e-74) genomic_reference:SL2.40ch03 gene_region:58707077-58708156 transcript_region:SL2.40ch03:58707077..58708156- functional_description:"Unknown Protein (AHRD V1)"; NbS00008706g0031.1 protein AED:0.19 eAED:0.19 QI:171|1|0.8|1|0.75|0.6|5|16|271; (*GB) gi|255547097|ref|XP_002514606.1| (e_value=4e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G60880.1 (e_value=6e-19) | Symbols: BASL | breaking of asymmetry in the stomatal lineage | chr5:24488553-24489703 REVERSE LENGTH=262;; (*ITAG) Solyc03g114770.2.1 (e_value=5e-104) genomic_reference:SL2.40ch03 gene_region:58715783-58717263 transcript_region:SL2.40ch03:58715783..58717263- functional_description:"Unknown Protein (AHRD V1)"; NbS00008706g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|1|1|3|187|501; (*GB) gi|255547123|ref|XP_002514619.1| (e_value=0.0) Glycosyltransferase QUASIMODO1, putative [Ricinus communis];; (*SWP) sp|Q949Q1|GAUTB_ARATH (e_value=0.0) Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1;; (*TAIR) AT1G18580.1 (e_value=0.0) | Symbols: GAUT11 | galacturonosyltransferase 11 | chr1:6396144-6398005 FORWARD LENGTH=537;; (*ITAG) Solyc03g114810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58741832-58746719 transcript_region:SL2.40ch03:58741832..58746719- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00008706g0033.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|0|0.25|4|0|265; (*GB) gi|255547083|ref|XP_002514599.1| (e_value=2e-72) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G26300.1 (e_value=9e-51) | Symbols: | BSD domain-containing protein | chr1:9096023-9099746 REVERSE LENGTH=316;; (*ITAG) Solyc03g114740.2.1 (e_value=7e-110) genomic_reference:SL2.40ch03 gene_region:58701852-58705567 transcript_region:SL2.40ch03:58701852..58705567- functional_description:"BSD domain containing protein (AHRD V1 ***- B4FWY5_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00008706g0019.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|90; (*TAIR) AT1G79530.1 (e_value=8e-16) | Symbols: GAPCP-1 | glyceraldehyde-3-phosphate dehydrogenase of plastid 1 | chr1:29916232-29919088 REVERSE LENGTH=422;; (*ITAG) Solyc10g005510.2.1 (e_value=6e-15) genomic_reference:SL2.40ch10 gene_region:417823-423467 transcript_region:SL2.40ch10:417823..423467- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q8VWN9_CAPAN); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00008706g0035.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.83|1|0.8|0.83|6|0|368; (*GB) gi|83265567|gb|ABB97536.1| (e_value=0.0) microtubule-associated protein [Nicotiana benthamiana];; (*TAIR) AT5G08120.1 (e_value=2e-61) | Symbols: MPB2C | movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326;; (*ITAG) Solyc03g114760.2.1 (e_value=5e-178) genomic_reference:SL2.40ch03 gene_region:58711188-58715633 transcript_region:SL2.40ch03:58711188..58715633+ go_terms:GO:0005515 functional_description:"TMV-MP30 binding protein 2C (AHRD V1 **-* Q8S556_TOBAC)"; GO:0005515 NbS00008706g0027.1 protein AED:0.23 eAED:0.23 QI:79|0.77|0.75|0.96|0.96|0.89|28|180|1305; (*GB) gi|297734102|emb|CBI15349.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05549|HRQ1_YEAST (e_value=5e-109) Putative ATP-dependent helicase HRQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRQ1 PE=1 SV=1;; (*TAIR) AT5G08110.1 (e_value=0.0) | Symbols: | nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases | chr5:2594854-2600114 REVERSE LENGTH=1141;; (*ITAG) Solyc03g114780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58720409-58734492 transcript_region:SL2.40ch03:58720409..58734492+ go_terms:GO:0004003 functional_description:"Predicted ATP-dependent RNA helicase (AHRD V1 **** Q2U083_ASPOR); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004003 NbS00041879g0002.1 protein AED:0.42 eAED:0.81 QI:64|0|0|1|0|0|2|0|44 NbS00042233g0002.1 protein AED:0.13 eAED:0.13 QI:139|1|0.5|1|1|1|2|0|263; (*GB) gi|3341468|emb|CAA08755.1| (e_value=9e-154) Dof zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q84JQ8|DOF18_ARATH (e_value=3e-38) Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1;; (*TAIR) AT1G64620.1 (e_value=3e-39) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:24007288-24008460 FORWARD LENGTH=352;; (*ITAG) Solyc03g082840.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:46231932-46233258 transcript_region:SL2.40ch03:46231932..46233258- go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 *-*- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00023782g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|189; (*GB) gi|356511295|ref|XP_003524362.1| (e_value=6e-81) PREDICTED: probable calcium-binding protein CML25-like [Glycine max];; (*SWP) sp|Q9FYK2|CML25_ARATH (e_value=2e-66) Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=1e-67) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc04g008000.2.1 (e_value=5e-106) genomic_reference:SL2.40ch04 gene_region:1652161-1653061 transcript_region:SL2.40ch04:1652161..1653061- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D9J0A7_9ROSI); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00011205g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|3047057|gb|AAC83146.1| (e_value=3e-29) 1-aminocyclopropane-1-carboxylate synthase [Nicotiana glutinosa];; (*SWP) sp|Q07262|1A1C_TOBAC (e_value=4e-28) 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1;; (*TAIR) AT1G01480.1 (e_value=4e-19) | Symbols: ACS2, AT-ACC2 | 1-amino-cyclopropane-1-carboxylate synthase 2 | chr1:175862-178051 FORWARD LENGTH=496;; (*ITAG) Solyc01g095080.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:78214067-78216996 transcript_region:SL2.40ch01:78214067..78216996- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00024761g0003.1 protein AED:0.03 eAED:0.07 QI:30|0|0|1|0|0|2|0|249; (*GB) gi|307136485|gb|ADN34286.1| (e_value=4e-93) hypothetical protein [Cucumis melo subsp. melo];; (*TAIR) AT5G15900.1 (e_value=2e-77) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=5e-115) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00034081g0005.1 protein AED:0.20 eAED:0.29 QI:0|0.85|0.86|1|0.71|0.86|15|484|644; (*GB) gi|302143800|emb|CBI22661.3| (e_value=5e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R749|MURC_THETN (e_value=1e-63) UDP-N-acetylmuramate--L-alanine ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=murC PE=3 SV=1;; (*ITAG) Solyc03g007970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2457428-2463837 transcript_region:SL2.40ch03:2457428..2463837+ go_terms:GO:0008152,GO:0009058,GO:0005737 functional_description:"UDP-N-acetylmuramate-alanine ligase (AHRD V1 ***- Q3LHF7_PHYPA); contains Interpro domain(s) IPR005758 UDP-N-acetylmuramate-alanine ligase "; GO:0008152,GO:0009058,GO:0005737 NbS00007324g0001.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.25|1|1|4|0|166; (*GB) gi|75241169|sp|Q84LF2.1|5EAS3_NICAT (e_value=1e-13) RecName: Full=5-epi-aristolochene synthase 3; Short=NaEAS12;; (*SWP) sp|Q84LF2|5EAS3_NICAT (e_value=4e-15) 5-epi-aristolochene synthase 3 OS=Nicotiana attenuata PE=1 SV=1;; (*ITAG) Solyc01g101190.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:82786563-82788821 transcript_region:SL2.40ch01:82786563..82788821+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00020797g0004.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.25|1|1|4|0|202 NbS00011998g0103.1 protein AED:0.13 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|423 NbS00011998g0104.1 protein AED:0.23 eAED:0.38 QI:152|0|0.5|1|0|0.5|2|541|106 NbS00011998g0117.1 protein AED:0.00 eAED:0.00 QI:2128|1|1|1|0|0.33|3|903|116 NbS00011998g0121.1 protein AED:0.05 eAED:0.05 QI:256|0|0.66|1|0|0|3|68|168 NbS00011998g0105.1 protein AED:0.02 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|360 NbS00011998g0122.1 protein AED:0.12 eAED:0.12 QI:18|0.76|0.57|1|0.64|0.69|26|402|2306 NbC25168844g0001.1 protein AED:0.00 eAED:0.00 QI:69|-1|0|1|-1|1|1|0|299; (*GB) gi|224135955|ref|XP_002327345.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g012660.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10555142-10556635 transcript_region:SL2.40ch00:10555142..10556635- functional_description:"F-box domain containing protein (AHRD V1 ***- B6UBC8_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006450g0005.1 protein AED:0.30 eAED:0.31 QI:0|0.75|0.77|1|0.75|0.77|9|0|545; (*GB) gi|225441391|ref|XP_002278205.1| (e_value=0.0) PREDICTED: TBCC domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q08AV6|TBCC1_XENLA (e_value=3e-29) TBCC domain-containing protein 1 OS=Xenopus laevis GN=tbccd1 PE=2 SV=1;; (*TAIR) AT3G57890.1 (e_value=0.0) | Symbols: | Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573;; (*ITAG) Solyc10g080440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61036122-61045515 transcript_region:SL2.40ch10:61036122..61045515+ go_terms:GO:0005488 functional_description:"TBCC domain-containing protein 1 (AHRD V1 ***- TBCC1_XENTR); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0005488 NbS00025376g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0.33|0.33|1|1|3|629|81 NbS00013722g0005.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|127|170; (*GB) gi|296088616|emb|CBI37607.3| (e_value=2e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G18800.1 (e_value=9e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6479746-6480339 FORWARD LENGTH=197;; (*ITAG) Solyc11g005390.1.1 (e_value=3e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:308377-308943 transcript_region:SL2.40ch11:308377..308943+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VWQ2_POPTN)"; NbS00013722g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0.8|0.83|6|181|227; (*GB) gi|356530728|ref|XP_003533932.1| (e_value=4e-55) PREDICTED: uncharacterized protein LOC100787858 [Glycine max];; (*TAIR) AT2G18465.1 (e_value=2e-28) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:8003223-8004742 REVERSE LENGTH=268;; (*ITAG) Solyc11g005400.1.1 (e_value=4e-110) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:310557-316867 transcript_region:SL2.40ch11:310557..316867- go_terms:GO:0031072 functional_description:"DnaJ domain containing protein (AHRD V1 ***- B6U3I3_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00037258g0009.1 protein AED:0.05 eAED:0.05 QI:180|0.66|0.5|1|0.66|0.5|4|0|387; (*GB) gi|359483831|ref|XP_003633023.1| (e_value=6e-150) PREDICTED: dnaJ homolog subfamily B member 13 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9QYJ3|DNJB1_MOUSE (e_value=3e-49) DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3;; (*TAIR) AT2G20560.1 (e_value=2e-128) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc02g077670.2.1 (e_value=5e-142) genomic_reference:SL2.40ch02 gene_region:37137141-37141307 transcript_region:SL2.40ch02:37137141..37141307- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00037258g0001.1 protein AED:0.05 eAED:0.05 QI:198|0.90|0.95|0.95|0.80|0.81|22|544|994; (*GB) gi|359483492|ref|XP_002273615.2| (e_value=0.0) PREDICTED: glycogen phosphorylase 1-like [Vitis vinifera];; (*SWP) sp|Q00766|PHS1_DICDI (e_value=0.0) Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3;; (*TAIR) AT3G46970.1 (e_value=0.0) | Symbols: ATPHS2, PHS2 | alpha-glucan phosphorylase 2 | chr3:17301625-17306111 REVERSE LENGTH=841;; (*ITAG) Solyc02g077680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37144954-37157686 transcript_region:SL2.40ch02:37144954..37157686+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9H2Q8_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00000160g0008.1 protein AED:0.10 eAED:0.11 QI:59|1|0.83|1|1|1|6|0|318; (*GB) gi|224053304|ref|XP_002297754.1| (e_value=4e-170) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=1e-135) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=8e-137) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g097540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80110230-80112926 transcript_region:SL2.40ch01:80110230..80112926- go_terms:GO:0051015 functional_description:"Annexin 3 (AHRD V1 ***- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0051015 NbS00000160g0012.1 protein AED:0.15 eAED:0.15 QI:229|1|1|1|0.57|0.5|8|435|318; (*GB) gi|224053304|ref|XP_002297754.1| (e_value=9e-169) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=1e-136) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=9e-138) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g097510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80096980-80100082 transcript_region:SL2.40ch01:80096980..80100082- go_terms:GO:0005544 functional_description:"Annexin 3 (AHRD V1 ***- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00000160g0007.1 protein AED:0.21 eAED:0.21 QI:0|1|0.83|1|1|1|6|267|344; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=2e-137) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=5e-100) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=4e-101) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00051512g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|42 NbS00051512g0002.1 protein AED:0.25 eAED:0.33 QI:38|0|0|1|0|0|2|0|107; (*GB) gi|255566795|ref|XP_002524381.1| (e_value=5e-33) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q7XA72|AB21G_ARATH (e_value=4e-32) ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2;; (*TAIR) AT3G25620.2 (e_value=3e-33) | Symbols: | ABC-2 type transporter family protein | chr3:9316677-9319505 REVERSE LENGTH=672;; (*ITAG) Solyc04g006960.2.1 (e_value=1e-41) genomic_reference:SL2.40ch04 gene_region:649479-653198 transcript_region:SL2.40ch04:649479..653198- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00025127g0006.1 protein AED:0.14 eAED:0.14 QI:66|0.25|0|0.6|0.75|0.6|5|0|231; (*GB) gi|359475172|ref|XP_003631608.1| (e_value=5e-85) PREDICTED: proline-rich receptor-like protein kinase PERK7-like [Vitis vinifera];; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=2e-81) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=2e-82) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc03g034060.2.1 (e_value=1e-120) genomic_reference:SL2.40ch03 gene_region:10043587-10048351 transcript_region:SL2.40ch03:10043587..10048351- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00025127g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.2|0.6|0.5|0.4|5|0|224; (*GB) gi|225458303|ref|XP_002282793.1| (e_value=9e-70) PREDICTED: uncharacterized protein LOC100247211 [Vitis vinifera];; (*TAIR) AT2G18460.1 (e_value=3e-71) | Symbols: LCV3 | like COV 3 | chr2:8001320-8002854 FORWARD LENGTH=274;; (*ITAG) Solyc04g071760.2.1 (e_value=9e-91) genomic_reference:SL2.40ch04 gene_region:56310283-56312751 transcript_region:SL2.40ch04:56310283..56312751+ functional_description:"Hypothetical membrane protein (AHRD V1 **-- Q2LSQ3_SYNAS); contains Interpro domain(s) IPR007462 Protein of unknown function DUF502 "; NbS00023050g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.83|1|0.8|0.5|6|417|214; (*GB) gi|323482812|gb|ADX86829.1| (e_value=6e-110) ubiquitin-conjugating enzyme [Nicotiana tabacum];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=1e-109) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=8e-111) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc06g070980.2.1 (e_value=7e-112) genomic_reference:SL2.40ch06 gene_region:39977108-39982691 transcript_region:SL2.40ch06:39977108..39982691- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 **** UBC2_MEDSA); contains Interpro domain(s) IPR019775 WD40 repeat, conserved site IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00023050g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0|0.83|0.6|0.33|6|0|315; (*GB) gi|255540949|ref|XP_002511539.1| (e_value=9e-80) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62550.1 (e_value=1e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105839-25107875 REVERSE LENGTH=487;; (*ITAG) Solyc06g070970.2.1 (e_value=3e-147) genomic_reference:SL2.40ch06 gene_region:39973514-39977462 transcript_region:SL2.40ch06:39973514..39977462+ functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 ***- Q9FJJ1_ARATH)"; NbS00023050g0116.1 protein AED:0.22 eAED:0.22 QI:96|1|1|1|0.76|0.72|18|220|893 NbS00023050g0117.1 protein AED:0.17 eAED:0.17 QI:283|0.93|0.93|1|0.8|0.87|16|275|952 NbS00029742g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|486; (*GB) gi|359488988|ref|XP_003633851.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q5ZJT0|SUV3_CHICK (e_value=3e-84) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Gallus gallus GN=SUPV3L1 PE=2 SV=1;; (*TAIR) AT5G39840.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, mitochondrial, putative | chr5:15946769-15949186 FORWARD LENGTH=776;; (*ITAG) Solyc11g011460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4515208-4519004 transcript_region:SL2.40ch11:4515208..4519004+ go_terms:GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q10D00_ORYSJ); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00029742g0002.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0|2|454|268; (*GB) gi|359488988|ref|XP_003633851.1| (e_value=2e-152) PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8IYB8|SUV3_HUMAN (e_value=3e-45) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Homo sapiens GN=SUPV3L1 PE=1 SV=1;; (*TAIR) AT5G39840.1 (e_value=3e-137) | Symbols: | ATP-dependent RNA helicase, mitochondrial, putative | chr5:15946769-15949186 FORWARD LENGTH=776;; (*ITAG) Solyc11g011460.1.1 (e_value=5e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4515208-4519004 transcript_region:SL2.40ch11:4515208..4519004+ go_terms:GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q10D00_ORYSJ); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00029742g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.66|1|0.6|0.66|6|0|741; (*GB) gi|3122572|sp|Q43644.1|NDUS1_SOLTU (e_value=0.0) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; AltName: Full=76 kDa mitochondrial complex I subunit; AltName: Full=Complex I-76kD; Short=CI-76kD; AltName: Full=NADH-ubiquinone oxidoreductase 76 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43644|NDUS1_SOLTU (e_value=0.0) NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G37510.1 (e_value=0.0) | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897490-14900352 FORWARD LENGTH=745;; (*ITAG) Solyc11g011470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4520459-4526103 transcript_region:SL2.40ch11:4520459..4526103- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 ***- B9T118_RICCO); contains Interpro domain(s) IPR010228 NADH:ubiquinone oxidoreductase, subunit G "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbS00028016g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|157 NbS00017458g0005.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|62 NbS00017458g0004.1 protein AED:0.34 eAED:0.45 QI:0|0|0|1|0|0|4|0|104; (*ITAG) Solyc09g008110.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006575g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|191; (*GB) gi|359478149|ref|XP_002264839.2| (e_value=9e-106) PREDICTED: probable serine/threonine-protein kinase GCN2-like [Vitis vinifera];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=5e-102) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.1 (e_value=3e-103) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241;; (*ITAG) Solyc11g044970.1.1 (e_value=2e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36492709-36494266 transcript_region:SL2.40ch11:36492709..36494266- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LWD0_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006575g0019.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|0.5|0.66|3|49|100; (*GB) gi|356544520|ref|XP_003540698.1| (e_value=5e-23) PREDICTED: probable serine/threonine-protein kinase GCN2-like [Glycine max];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=1e-20) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.1 (e_value=7e-22) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241;; (*ITAG) Solyc11g044980.1.1 (e_value=1e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36498594-36499576 transcript_region:SL2.40ch11:36498594..36499576- functional_description:"Kinase family protein (AHRD V1 ***- D7LWD0_ARALY)"; NbS00006575g0021.1 protein AED:0.09 eAED:0.09 QI:0|1|0.87|1|0.71|0.75|8|0|327; (*GB) gi|255585505|ref|XP_002533444.1| (e_value=3e-163) eif2alpha kinase, putative [Ricinus communis];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=1e-145) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.1 (e_value=9e-147) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241;; (*ITAG) Solyc11g044960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36479889-36488654 transcript_region:SL2.40ch11:36479889..36488654- functional_description:"Histidyl-tRNA synthetase (AHRD V1 ***- B2WAN2_PYRTR)"; NbS00006575g0016.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.33|3|0|137; (*GB) gi|297743778|emb|CBI36661.3| (e_value=4e-44) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LX30|GCN2_ARATH (e_value=2e-38) Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2;; (*TAIR) AT3G59410.2 (e_value=2e-39) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1265;; (*ITAG) Solyc11g044950.1.1 (e_value=5e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36470098-36472551 transcript_region:SL2.40ch11:36470098..36472551- functional_description:"Kinase family protein (AHRD V1 ***- D7LWD0_ARALY)"; NbS00006575g0017.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|0.5|0.66|3|0|105 NbS00006575g0023.1 protein AED:0.16 eAED:0.16 QI:1|0.93|0.87|1|0.66|0.62|16|0|839; (*GB) gi|225433864|ref|XP_002264735.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264644 [Vitis vinifera];; (*TAIR) AT2G41830.1 (e_value=0.0) | Symbols: | Uncharacterized protein | chr2:17450431-17456453 REVERSE LENGTH=1025;; (*ITAG) Solyc11g044480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35792430-35811862 transcript_region:SL2.40ch11:35792430..35811862- go_terms:GO:0005488 functional_description:"Protein EFR3 homolog (AHRD V1 *-*- EFR3_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00006575g0022.1 protein AED:0.31 eAED:1.00 QI:43|0|0|1|0|0|3|0|61 NbS00004272g0012.1 protein AED:0.02 eAED:0.02 QI:252|1|0.66|1|0.5|0.66|3|509|102; (*GB) gi|388513069|gb|AFK44596.1| (e_value=6e-36) unknown [Lotus japonicus];; (*TAIR) AT5G09960.1 (e_value=3e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112;; (*ITAG) Solyc04g011910.2.1 (e_value=4e-48) genomic_reference:SL2.40ch04 gene_region:4291763-4293737 transcript_region:SL2.40ch04:4291763..4293737- functional_description:"Os03g0169900 protein (Fragment) (AHRD V1 ***- Q0DUS0_ORYSJ)"; NbS00004272g0010.1 protein AED:0.23 eAED:0.23 QI:91|0.5|0.33|1|0.5|0.66|3|0|295; (*GB) gi|225436773|ref|XP_002267732.1| (e_value=5e-102) PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera];; (*SWP) sp|Q5M8L0|OTU6B_XENTR (e_value=7e-32) OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1;; (*TAIR) AT3G62940.1 (e_value=1e-91) | Symbols: | Cysteine proteinases superfamily protein | chr3:23263106-23264197 REVERSE LENGTH=316;; (*ITAG) Solyc04g053080.2.1 (e_value=1e-119) genomic_reference:SL2.40ch04 gene_region:50582502-50584310 transcript_region:SL2.40ch04:50582502..50584310- go_terms:GO:0008234 functional_description:"OTU domain-containing protein 6B (AHRD V1 ***- B6TYC6_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00004272g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=2e-44) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=1e-43) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=9e-45) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=8e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00004272g0011.1 protein AED:0.42 eAED:0.44 QI:0|0|0|0.5|0|0|2|0|123; (*GB) gi|297812045|ref|XP_002873906.1| (e_value=5e-44) glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=2e-44) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=2e-45) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=2e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00014275g0001.1 protein AED:0.21 eAED:0.21 QI:783|0.6|0.63|1|0.9|0.72|11|195|497; (*GB) gi|255562711|ref|XP_002522361.1| (e_value=0.0) oligopeptidase B, putative [Ricinus communis];; (*SWP) sp|P24555|PTRB_ECOLI (e_value=5e-34) Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2;; (*TAIR) AT5G66960.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr5:26736209-26739493 REVERSE LENGTH=792;; (*ITAG) Solyc02g090180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46383042-46388070 transcript_region:SL2.40ch02:46383042..46388070+ go_terms:GO:0006508 functional_description:"Oligopeptidase (Protease II) (AHRD V1 **-- A6EDE8_9SPHI); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0006508 NbS00028338g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.87|0.55|0.88|0.5|0.77|9|0|416; (*GB) gi|225470840|ref|XP_002265759.1| (e_value=5e-150) PREDICTED: choline/ethanolamine kinase [Vitis vinifera];; (*SWP) sp|Q9Y259|CHKB_HUMAN (e_value=1e-51) Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3;; (*TAIR) AT1G74320.1 (e_value=9e-139) | Symbols: | Protein kinase superfamily protein | chr1:27941192-27942903 FORWARD LENGTH=350;; (*ITAG) Solyc04g072020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56687059-56690115 transcript_region:SL2.40ch04:56687059..56690115+ go_terms:GO:0004103 functional_description:"Choline kinase (AHRD V1 **** Q9AVR9_PEA); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004103 NbS00017360g0014.1 protein AED:0.00 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|505|707; (*GB) gi|224061145|ref|XP_002300357.1| (e_value=4e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C896|PP209_ARATH (e_value=2e-131) Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1;; (*TAIR) AT3G02650.1 (e_value=1e-132) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:568135-569865 FORWARD LENGTH=576;; (*ITAG) Solyc11g005140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:128953-130722 transcript_region:SL2.40ch11:128953..130722+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A0JBX0_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017360g0017.1 protein AED:0.07 eAED:0.07 QI:51|1|0.5|1|1|0.5|2|0|78; (*ITAG) Solyc06g082810.2.1 (e_value=2e-13) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbS00017360g0013.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|0.83|6|12|170; (*GB) gi|225435975|ref|XP_002271328.1| (e_value=6e-105) PREDICTED: oligoribonuclease [Vitis vinifera];; (*SWP) sp|Q9ZVE0|ORN_ARATH (e_value=1e-86) Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2;; (*TAIR) AT2G26970.2 (e_value=1e-87) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:11509908-11511903 REVERSE LENGTH=218;; (*ITAG) Solyc06g082810.2.1 (e_value=2e-116) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbS00017360g0015.1 protein AED:0.13 eAED:0.13 QI:173|0.91|0.92|1|0.66|0.69|13|406|483; (*GB) gi|357467573|ref|XP_003604071.1| (e_value=0.0) MLO-like protein [Medicago truncatula];; (*SWP) sp|O49621|MLO1_ARATH (e_value=0.0) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=0.0) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc06g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44779673-44784035 transcript_region:SL2.40ch06:44779673..44784035+ go_terms:GO:0016021 functional_description:"MLO-like protein 1 (AHRD V1 ***- C6EWE5_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00017360g0020.1 protein AED:0.37 eAED:0.37 QI:261|0.8|0.66|1|0.8|1|6|277|170; (*GB) gi|224129278|ref|XP_002320545.1| (e_value=6e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07580.1 (e_value=5e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2421177-2422661 REVERSE LENGTH=143;; (*ITAG) Solyc06g082830.2.1 (e_value=5e-74) genomic_reference:SL2.40ch06 gene_region:44784361-44787512 transcript_region:SL2.40ch06:44784361..44787512- functional_description:"Iron-stress related protein (AHRD V1 ***- B4FBU5_MAIZE)"; NbS00041781g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0.33|1|1|1|3|0|365; (*GB) gi|224076808|ref|XP_002305002.1| (e_value=5e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|O64791|SY124_ARATH (e_value=3e-145) Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1;; (*TAIR) AT1G61290.1 (e_value=2e-146) | Symbols: SYP124, ATSYP124 | syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303;; (*ITAG) Solyc12g005580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:311206-312223 transcript_region:SL2.40ch12:311206..312223- go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00041781g0008.1 protein AED:0.28 eAED:0.28 QI:301|0.7|0.63|1|0.3|0.36|11|0|550; (*GB) gi|356510628|ref|XP_003524039.1| (e_value=0.0) PREDICTED: transmembrane protein 184C-like [Glycine max];; (*SWP) sp|Q17QL9|T184C_BOVIN (e_value=1e-36) Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1;; (*TAIR) AT4G38360.2 (e_value=0.0) | Symbols: LAZ1 | Protein of unknown function (DUF300) | chr4:17967389-17969798 FORWARD LENGTH=485;; (*ITAG) Solyc12g005590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:313462-317617 transcript_region:SL2.40ch12:313462..317617- functional_description:"Transmembrane protein 34 (AHRD V1 *-*- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; NbS00032098g0009.1 protein AED:0.22 eAED:0.22 QI:220|1|1|1|0.5|0.33|3|957|91; (*GB) gi|225439914|ref|XP_002279855.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100251731 [Vitis vinifera];; (*ITAG) Solyc09g007480.2.1 (e_value=3e-12) genomic_reference:SL2.40ch09 gene_region:1040671-1042715 transcript_region:SL2.40ch09:1040671..1042715+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032098g0010.1 protein AED:0.28 eAED:0.28 QI:253|1|1|1|0.5|0.66|3|509|244; (*GB) gi|225439916|ref|XP_002279879.1| (e_value=2e-112) PREDICTED: cell number regulator 8-like [Vitis vinifera];; (*SWP) sp|B4FUS3|CNR8_MAIZE (e_value=5e-89) Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1;; (*TAIR) AT2G37110.1 (e_value=6e-101) | Symbols: | PLAC8 family protein | chr2:15592689-15593726 FORWARD LENGTH=242;; (*ITAG) Solyc10g084260.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63201508-63204679 transcript_region:SL2.40ch10:63201508..63204679- functional_description:"Cell number regulator 8 (AHRD V1 **-- B4FUS3_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00032098g0004.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|73; (*GB) gi|57013964|ref|YP_173436.1| (e_value=3e-41) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00032098g0011.1 protein AED:0.44 eAED:0.44 QI:0|0|0.5|1|0|0|2|96|81; (*ITAG) Solyc09g007500.2.1 (e_value=1e-11) genomic_reference:SL2.40ch09 gene_region:1075063-1077700 transcript_region:SL2.40ch09:1075063..1077700- go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006779 DNA binding protein S1FA "; GO:0005634 NbS00011408g0015.1 protein AED:0.07 eAED:0.07 QI:224|1|1|1|1|1|6|239|572; (*GB) gi|212286378|dbj|BAG82851.1| (e_value=0.0) 4-coumarate:CoA ligase [Ipomoea batatas];; (*SWP) sp|P31687|4CL2_SOYBN (e_value=0.0) 4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2;; (*TAIR) AT1G65060.1 (e_value=0.0) | Symbols: 4CL3 | 4-coumarate:CoA ligase 3 | chr1:24167385-24171457 REVERSE LENGTH=561;; (*ITAG) Solyc03g097030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52828274-52833212 transcript_region:SL2.40ch03:52828274..52833212- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** B6F2H0_IPOBA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00011408g0016.1 protein AED:0.19 eAED:0.23 QI:177|0.85|0.5|1|0.71|0.75|8|0|698; (*GB) gi|225454791|ref|XP_002274077.1| (e_value=0.0) PREDICTED: ATPase family AAA domain-containing protein 3-B [Vitis vinifera];; (*SWP) sp|Q6NVR9|ATAD3_XENTR (e_value=5e-105) ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis GN=atad3 PE=2 SV=1;; (*TAIR) AT3G03060.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:692188-695424 FORWARD LENGTH=628;; (*ITAG) Solyc03g097020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52819992-52826542 transcript_region:SL2.40ch03:52819992..52826542- go_terms:GO:0005515 functional_description:"26s protease regulatory subunit (AHRD V1 *--- C4M846_ENTHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005515 NbS00011408g0022.1 protein AED:0.13 eAED:0.13 QI:55|1|0.66|1|1|0.66|3|403|66; (*GB) gi|388493288|gb|AFK34710.1| (e_value=2e-41) unknown [Medicago truncatula];; (*SWP) sp|Q9M9M6|NDUS6_ARATH (e_value=2e-39) NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana GN=At3g03070 PE=3 SV=1;; (*TAIR) AT3G03070.1 (e_value=1e-40) | Symbols: | NADH-ubiquinone oxidoreductase-related | chr3:696593-698069 REVERSE LENGTH=110;; (*ITAG) Solyc03g097010.2.1 (e_value=8e-41) genomic_reference:SL2.40ch03 gene_region:52814038-52819637 transcript_region:SL2.40ch03:52814038..52819637+ go_terms:GO:0005515 functional_description:"NADH dehydrogenase (AHRD V1 *-*- D2VG69_NAEGR); contains Interpro domain(s) IPR019401 Zinc finger, CHCC-type "; GO:0005515 NbS00011408g0023.1 protein AED:0.13 eAED:0.13 QI:0|0.87|0.66|1|0.75|0.77|9|537|952; (*GB) gi|297737325|emb|CBI26526.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04647|PP399_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2;; (*TAIR) AT5G27270.1 (e_value=0.0) | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9605650-9609625 FORWARD LENGTH=1038;; (*ITAG) Solyc03g097000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52806728-52813048 transcript_region:SL2.40ch03:52806728..52813048+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M672_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00058874g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0.5|1|1|1|2|414|104 NbS00032466g0003.1 protein AED:0.08 eAED:0.08 QI:1278|0.8|0.83|1|0.8|0.66|6|314|385; (*GB) gi|359492820|ref|XP_003634469.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257505 isoform 2 [Vitis vinifera];; (*TAIR) AT4G08550.1 (e_value=1e-158) | Symbols: | electron carriers;protein disulfide oxidoreductases | chr4:5444345-5446825 FORWARD LENGTH=637;; (*ITAG) Solyc04g072380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57005291-57010908 transcript_region:SL2.40ch04:57005291..57010908+ go_terms:GO:0023034,GO:0045454 functional_description:"Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein (AHRD V1 *--- PREX2_MOUSE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00007371g0001.1 protein AED:0.01 eAED:0.01 QI:185|1|0.5|1|0|0.5|2|0|324; (*GB) gi|297736235|emb|CBI24873.3| (e_value=8e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=6e-90) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT3G57670.1 (e_value=3e-110) | Symbols: NTT, WIP2 | C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383;; (*ITAG) Solyc01g087050.2.1 (e_value=1e-133) genomic_reference:SL2.40ch01 gene_region:73730914-73735095 transcript_region:SL2.40ch01:73730914..73735095- go_terms:GO:0003700 functional_description:"Zinc finger-like protein (AHRD V1 **-- Q9LT33_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00007371g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|224104053|ref|XP_002313298.1| (e_value=2e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|P82658|TL19_ARATH (e_value=1e-88) Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2;; (*TAIR) AT3G63540.1 (e_value=1e-82) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:23459372-23459803 REVERSE LENGTH=143;; (*ITAG) Solyc01g087040.2.1 (e_value=9e-102) genomic_reference:SL2.40ch01 gene_region:73725748-73726716 transcript_region:SL2.40ch01:73725748..73726716+ functional_description:"Thylakoid lumenal 19 kDa protein, chloroplastic (AHRD V1 ***- TL19_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; NbS00002353g0004.1 protein AED:0.20 eAED:0.26 QI:0|0.66|0.6|1|0.44|0.6|10|388|424; (*GB) gi|225449184|ref|XP_002278923.1| (e_value=9e-163) PREDICTED: uncharacterized protein LOC100240981 [Vitis vinifera];; (*TAIR) AT5G13610.1 (e_value=9e-139) | Symbols: | Protein of unknown function (DUF155) | chr5:4383073-4384808 FORWARD LENGTH=402;; (*ITAG) Solyc04g049850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42827134-42836304 transcript_region:SL2.40ch04:42827134..42836304+ go_terms:GO:0005975 functional_description:"Uncharacterized conserved protein (AHRD V1 *--- Q2S8S5_HAHCH); contains Interpro domain(s) IPR003734 Protein of unknown function DUF155 "; GO:0005975 NbS00011414g0005.1 protein AED:0.03 eAED:0.03 QI:201|0.5|0.66|1|0.5|0.33|3|236|309; (*GB) gi|147855038|emb|CAN82378.1| (e_value=4e-160) hypothetical protein VITISV_036229 [Vitis vinifera];; (*TAIR) AT5G19290.1 (e_value=1e-157) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6494113-6495105 FORWARD LENGTH=330;; (*ITAG) Solyc05g056000.2.1 (e_value=1e-173) genomic_reference:SL2.40ch05 gene_region:64542811-64544762 transcript_region:SL2.40ch05:64542811..64544762+ go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00032215g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.5|0.75|0.66|0.5|4|446|216; (*GB) gi|296082660|emb|CBI21665.3| (e_value=1e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G63640.1 (e_value=3e-41) | Symbols: | ENTH/VHS/GAT family protein | chr5:25478935-25481221 FORWARD LENGTH=447;; (*ITAG) Solyc11g005460.1.1 (e_value=1e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:374639-378429 transcript_region:SL2.40ch11:374639..378429+ go_terms:GO:0008565 functional_description:"VHS domain-containing protein (AHRD V1 **-- D7MPR1_ARALY); contains Interpro domain(s) IPR004152 GAT "; GO:0008565 NbS00021459g0017.1 protein AED:0.11 eAED:0.12 QI:0|0.71|0.5|0.75|1|1|8|0|438; (*GB) gi|297741293|emb|CBI32424.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B4MX21|RAD54_DROWI (e_value=2e-76) DNA repair and recombination protein RAD54-like OS=Drosophila willistoni GN=okr PE=3 SV=1;; (*TAIR) AT3G19210.1 (e_value=0.0) | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 | chr3:6652799-6658876 REVERSE LENGTH=910;; (*ITAG) Solyc04g056400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53329103-53331531 transcript_region:SL2.40ch04:53329103..53331531+ go_terms:GO:0005524 functional_description:"DNA repair and recombination protein RAD54 (AHRD V1 *--- D0MQ92_PHYIN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00021459g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.9|0.72|0.90|0.9|0.90|11|0|483; (*GB) gi|359475198|ref|XP_002282100.2| (e_value=0.0) PREDICTED: DNA repair and recombination protein RAD54-like [Vitis vinifera];; (*SWP) sp|P41410|RAD54_SCHPO (e_value=5e-76) DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp54 PE=1 SV=2;; (*TAIR) AT3G19210.1 (e_value=0.0) | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 | chr3:6652799-6658876 REVERSE LENGTH=910;; (*ITAG) Solyc04g056410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53331546-53342670 transcript_region:SL2.40ch04:53331546..53342670+ go_terms:GO:0005524 functional_description:"DNA repair and recombination protein RAD54 (AHRD V1 **-- D0MQ92_PHYIN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00021459g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.25|1|1|4|0|433; (*GB) gi|14571808|dbj|BAB61098.1| (e_value=0.0) phi-2 [Nicotiana tabacum];; (*SWP) sp|Q9M7Q3|AI5L6_ARATH (e_value=1e-84) ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1;; (*TAIR) AT4G34000.2 (e_value=8e-86) | Symbols: ABF3, DPBF5 | abscisic acid responsive elements-binding factor 3 | chr4:16296008-16297971 FORWARD LENGTH=454;; (*ITAG) Solyc11g044560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35950455-35955757 transcript_region:SL2.40ch11:35950455..35955757- go_terms:GO:0005634,GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 **-- Q0PN11_9FABA); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00021459g0015.1 protein AED:0.31 eAED:0.31 QI:583|1|0.75|1|0.33|0.25|4|1091|55 NbS00060094g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.75|1|0.66|0.75|4|378|168; (*GB) gi|255562592|ref|XP_002522302.1| (e_value=1e-69) mitochondrial inner membrane protease subunit, putative [Ricinus communis];; (*SWP) sp|Q9CQU8|IMP1L_MOUSE (e_value=6e-32) Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1;; (*TAIR) AT1G53530.1 (e_value=2e-54) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19978249-19979778 FORWARD LENGTH=168;; (*ITAG) Solyc02g070870.2.1 (e_value=2e-98) genomic_reference:SL2.40ch02 gene_region:35048115-35049836 transcript_region:SL2.40ch02:35048115..35049836- go_terms:GO:0004252,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 1 (AHRD V1 ***- B6T7U7_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004252,GO:0004222 NbS00003002g0007.1 protein AED:0.01 eAED:0.01 QI:116|1|1|1|1|1|4|209|289; (*GB) gi|255554513|ref|XP_002518295.1| (e_value=4e-42) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=4e-39) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=3e-40) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc06g064590.1.1 (e_value=2e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36640366-36644660 transcript_region:SL2.40ch06:36640366..36644660+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *--- Q401N5_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00003002g0010.1 protein AED:0.10 eAED:0.31 QI:0|0.25|0|0.6|1|1|5|0|183; (*GB) gi|6094014|sp|O82528.1|RL15_PETHY (e_value=7e-62) RecName: Full=60S ribosomal protein L15;; (*SWP) sp|O82528|RL15_PETHY (e_value=2e-63) 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1;; (*TAIR) AT4G17390.1 (e_value=4e-61) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9714407-9715545 REVERSE LENGTH=204;; (*ITAG) Solyc06g060400.2.1 (e_value=9e-66) genomic_reference:SL2.40ch06 gene_region:34803093-34805179 transcript_region:SL2.40ch06:34803093..34805179- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbS00028679g0001.1 protein AED:0.08 eAED:0.08 QI:281|0.88|0.9|1|0.88|0.8|10|299|305; (*GB) gi|255542956|ref|XP_002512541.1| (e_value=0.0) NAD dependent epimerase/dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9SA52|CP41B_ARATH (e_value=0.0) Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1;; (*TAIR) AT1G09340.1 (e_value=0.0) | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding | chr1:3015473-3018035 FORWARD LENGTH=378;; (*ITAG) Solyc06g073260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41530107-41533923 transcript_region:SL2.40ch06:41530107..41533923- go_terms:GO:0008266,GO:0003729 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C7QWY4_CYAP0); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008266,GO:0003729 NbC26282023g0004.1 protein AED:0.24 eAED:0.24 QI:146|1|1|1|1|1|4|551|139; (*GB) gi|109288140|gb|ABG29113.1| (e_value=4e-93) multiprotein bridging factor 1b [Solanum lycopersicum];; (*SWP) sp|Q9LXT3|MBF1B_ARATH (e_value=1e-80) Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1;; (*TAIR) AT3G58680.1 (e_value=8e-82) | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142;; (*ITAG) Solyc12g014290.1.1 (e_value=8e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5099925-5102018 transcript_region:SL2.40ch12:5099925..5102018+ go_terms:GO:0003713 functional_description:"Multiprotein bridging factor 1b (AHRD V1 ***- Q152U8_SOLLC); contains Interpro domain(s) IPR001387 Helix-turn-helix type 3 "; GO:0003713 NbS00011325g0009.1 protein AED:0.20 eAED:0.20 QI:250|1|1|1|1|1|5|443|148; (*GB) gi|370988689|dbj|BAL43558.1| (e_value=7e-82) type-A response regulator [Petunia x hybrida];; (*SWP) sp|Q9FPR6|ARR17_ARATH (e_value=7e-67) Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1;; (*TAIR) AT3G56380.1 (e_value=5e-68) | Symbols: ARR17, RR17 | response regulator 17 | chr3:20905480-20906368 FORWARD LENGTH=153;; (*ITAG) Solyc06g048600.2.1 (e_value=2e-91) genomic_reference:SL2.40ch06 gene_region:27842935-27846240 transcript_region:SL2.40ch06:27842935..27846240- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00011325g0008.1 protein AED:0.10 eAED:0.10 QI:147|1|1|1|1|1|5|410|530; (*GB) gi|225448713|ref|XP_002280844.1| (e_value=0.0) PREDICTED: transmembrane protein 87B [Vitis vinifera];; (*SWP) sp|Q8BKU8|TM87B_MOUSE (e_value=1e-53) Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1;; (*TAIR) AT1G61670.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr1:22770132-22772258 FORWARD LENGTH=513;; (*ITAG) Solyc06g048590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27837097-27841843 transcript_region:SL2.40ch06:27837097..27841843+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00013576g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|405; (*GB) gi|388827901|gb|AFK79033.1| (e_value=2e-161) glycosyltransferase UGT1 [Bupleurum chinense];; (*SWP) sp|Q9ZVX4|U90A1_ARATH (e_value=2e-128) UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1 PE=2 SV=1;; (*TAIR) AT2G16890.2 (e_value=1e-129) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:7316938-7319022 FORWARD LENGTH=478;; (*ITAG) Solyc02g067690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32395157-32396864 transcript_region:SL2.40ch02:32395157..32396864- go_terms:GO:0080044 functional_description:"Glucosyltransferase-like protein (AHRD V1 **** Q9LEQ4_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00013576g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|359488718|ref|XP_003633804.1| (e_value=6e-117) PREDICTED: RING-H2 finger protein ATL46-like [Vitis vinifera];; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=5e-89) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=4e-90) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc02g067680.1.1 (e_value=1e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32391618-32392706 transcript_region:SL2.40ch02:32391618..32392706+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00036600g0002.1 protein AED:0.17 eAED:0.17 QI:195|1|1|1|0|0.25|4|309|157; (*GB) gi|147822283|emb|CAN72908.1| (e_value=2e-25) hypothetical protein VITISV_018845 [Vitis vinifera];; (*ITAG) Solyc07g007270.2.1 (e_value=3e-37) genomic_reference:SL2.40ch07 gene_region:1995885-1997264 transcript_region:SL2.40ch07:1995885..1997264- functional_description:"Unknown Protein (AHRD V1)"; NbC25298496g0002.1 protein AED:0.50 eAED:0.50 QI:0|0.5|0|1|0.5|0.66|3|0|62; (*GB) gi|225461646|ref|XP_002285421.1| (e_value=3e-29) PREDICTED: ubiquitin-conjugating enzyme E2 35 isoform 1 [Vitis vinifera];; (*SWP) sp|Q94A97|UBC35_ARATH (e_value=1e-30) Ubiquitin-conjugating enzyme E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1;; (*TAIR) AT1G78870.2 (e_value=8e-32) | Symbols: UBC35, UBC13A | ubiquitin-conjugating enzyme 35 | chr1:29650589-29652203 FORWARD LENGTH=153;; (*ITAG) Solyc07g062570.2.1 (e_value=6e-32) genomic_reference:SL2.40ch07 gene_region:62472541-62478080 transcript_region:SL2.40ch07:62472541..62478080+ go_terms:GO:0043130 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 **** B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043130 NbS00002141g0003.1 protein AED:0.00 eAED:0.00 QI:124|1|1|1|1|1|2|178|643; (*GB) gi|225437850|ref|XP_002263867.1| (e_value=0.0) PREDICTED: nephrocystin-3 [Vitis vinifera];; (*SWP) sp|A0JM23|NPHP3_XENTR (e_value=2e-11) Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2;; (*TAIR) AT2G31240.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13317570-13319518 REVERSE LENGTH=617;; (*ITAG) Solyc09g066290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60333632-60340488 transcript_region:SL2.40ch09:60333632..60340488+ go_terms:GO:0005488 functional_description:"Kinesin light chain-like (AHRD V1 **-- Q6K715_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00039827g0006.1 protein AED:0.19 eAED:0.25 QI:123|0.8|0.87|1|0.53|0.56|16|218|413; (*GB) gi|225424124|ref|XP_002280167.1| (e_value=0.0) PREDICTED: origin recognition complex subunit 4-like [Vitis vinifera];; (*SWP) sp|Q4U3P8|ORC4_CRIGR (e_value=4e-36) Origin recognition complex subunit 4 OS=Cricetulus griseus GN=ORC4 PE=2 SV=1;; (*TAIR) AT2G01120.1 (e_value=6e-171) | Symbols: ORC4, ATORC4 | origin recognition complex subunit 4 | chr2:85444-88027 FORWARD LENGTH=418;; (*ITAG) Solyc05g008540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2865324-2871899 transcript_region:SL2.40ch05:2865324..2871899+ go_terms:GO:0003688,GO:0000166 functional_description:"Origin recognition complex 4 subunit (AHRD V1 **** Q6EWX1_ARATH); contains Interpro domain(s) IPR016527 Origin recognition complex, subunit 4 "; GO:0003688,GO:0000166 NbS00029295g0001.1 protein AED:0.28 eAED:0.37 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|45935117|gb|AAS79575.1| (e_value=4e-16) hypothetical protein [Ipomoea trifida];; (*ITAG) Solyc11g066460.1.1 (e_value=5e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49295188-49295838 transcript_region:SL2.40ch11:49295188..49295838+ functional_description:"Unknown Protein (AHRD V1)"; NbC25689488g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|238814676|gb|ACR56614.1| (e_value=7e-38) plasma intrinsic protein 2;4 [Juglans regia];; (*SWP) sp|P93004|PIP27_ARATH (e_value=2e-36) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=2e-37) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc02g083510.2.1 (e_value=2e-40) genomic_reference:SL2.40ch02 gene_region:41456730-41458872 transcript_region:SL2.40ch02:41456730..41458872- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q9FUC0_BRAOL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00021368g0024.1 protein AED:0.18 eAED:0.18 QI:137|1|1|1|0|1|2|114|380; (*GB) gi|167857805|gb|ACA03877.1| (e_value=0.0) chloroplast zebra-necrosis protein [Nicotiana benthamiana];; (*TAIR) AT2G16800.1 (e_value=2e-129) | Symbols: | high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372;; (*ITAG) Solyc08g005980.2.1 (e_value=3e-175) genomic_reference:SL2.40ch08 gene_region:749599-755094 transcript_region:SL2.40ch08:749599..755094+ go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00021368g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.37|0.33|0.77|1|1|9|0|782; (*GB) gi|359483694|ref|XP_002264328.2| (e_value=0.0) PREDICTED: small RNA 2'-O-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9C5Q8|HEN1_ARATH (e_value=0.0) Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1;; (*TAIR) AT4G20910.2 (e_value=0.0) | Symbols: HEN1 | double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942;; (*ITAG) Solyc02g070030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34394425-34403033 transcript_region:SL2.40ch02:34394425..34403033- go_terms:GO:0005622 functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D3Q922_STANL); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0005622 NbS00021368g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|375; (*GB) gi|224122406|ref|XP_002330615.1| (e_value=2e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-92) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=1e-129) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g070060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34479260-34480840 transcript_region:SL2.40ch02:34479260..34480840- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00021368g0011.1 protein AED:0.25 eAED:0.32 QI:0|0|0|1|1|1|2|0|226; (*GB) gi|350537309|ref|NP_001234800.1| (e_value=6e-15) ethylene-responsive nuclear protein [Solanum lycopersicum];; (*TAIR) AT4G20880.1 (e_value=4e-12) | Symbols: | ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) | chr4:11179389-11180606 REVERSE LENGTH=405;; (*ITAG) Solyc02g070040.1.1 (e_value=5e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34408881-34409906 transcript_region:SL2.40ch02:34408881..34409906- functional_description:"Ethylene-responsive nuclear protein (AHRD V1 *-*- Q38MV1_SOLLC)"; NbS00021368g0022.1 protein AED:0.33 eAED:0.34 QI:0|0.83|0.85|1|0.66|0.85|7|323|246; (*GB) gi|255564345|ref|XP_002523169.1| (e_value=1e-143) sphingolipid fatty acid alpha hydroxylase [Ricinus communis];; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=3e-58) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=2e-135) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00021368g0023.1 protein AED:0.35 eAED:0.35 QI:0|1|0.91|1|0.54|0.5|12|387|290; (*GB) gi|237687577|gb|ACR14818.1| (e_value=5e-147) phosphatidylinositol synthase [Solanum tuberosum];; (*SWP) sp|Q8GUK6|PIS2_ARATH (e_value=2e-119) Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 OS=Arabidopsis thaliana GN=PIS2 PE=2 SV=2;; (*TAIR) AT4G38570.1 (e_value=1e-120) | Symbols: PIS2 | probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 | chr4:18031420-18033091 REVERSE LENGTH=225;; (*ITAG) Solyc08g005990.2.1 (e_value=2e-150) genomic_reference:SL2.40ch08 gene_region:755421-760761 transcript_region:SL2.40ch08:755421..760761- go_terms:GO:0003881 functional_description:"CDP-diacylglycerol--inositol 3-phosphatidyltransferase (Phosphatidylinositol synthase) (AHRD V1 **** Q0IIY3_XENTR); contains Interpro domain(s) IPR014387 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote "; GO:0003881 NbS00021368g0016.1 protein AED:0.33 eAED:0.37 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|359483728|ref|XP_002267029.2| (e_value=1e-55) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|P93479|RETO_PAPSO (e_value=2e-39) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT5G44360.1 (e_value=4e-49) | Symbols: | FAD-binding Berberine family protein | chr5:17872100-17873698 REVERSE LENGTH=532;; (*ITAG) Solyc02g070060.1.1 (e_value=6e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34479260-34480840 transcript_region:SL2.40ch02:34479260..34480840- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00016234g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.25|1|1|1|4|0|897; (*GB) gi|147770432|emb|CAN75893.1| (e_value=0.0) hypothetical protein VITISV_009390 [Vitis vinifera];; (*SWP) sp|Q9LE38|NLP4_ARATH (e_value=0.0) Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1;; (*TAIR) AT1G20640.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr1:7155201-7157986 FORWARD LENGTH=844;; (*ITAG) Solyc04g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63713023-63717884 transcript_region:SL2.40ch04:63713023..63717884+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DME9_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00016234g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|0|0.5|2|1230|225; (*GB) gi|97974153|dbj|BAE94397.1| (e_value=2e-162) WD40 repeat protein [Ipomoea purpurea];; (*SWP) sp|Q9LPV9|LWD1_ARATH (e_value=8e-156) WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1;; (*TAIR) AT1G12910.1 (e_value=6e-157) | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-like superfamily protein | chr1:4395114-4396154 REVERSE LENGTH=346;; (*ITAG) Solyc04g082470.1.1 (e_value=1e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:63702623-63703666 transcript_region:SL2.40ch04:63702623..63703666+ functional_description:"WD repeat 2 (AHRD V1 **-- Q19N38_VITVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016234g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.91|0.94|0.97|0.91|0.97|38|353|1298; (*GB) gi|359491908|ref|XP_002272383.2| (e_value=0.0) PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera];; (*SWP) sp|P56941|NPC1_PIG (e_value=0.0) Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1;; (*TAIR) AT4G38350.1 (e_value=0.0) | Symbols: | Patched family protein | chr4:17958324-17966846 REVERSE LENGTH=1273;; (*ITAG) Solyc04g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63718268-63734726 transcript_region:SL2.40ch04:63718268..63734726- go_terms:GO:0005515 functional_description:"Niemann-Pick C1 protein (AHRD V1 **-- C5FQM2_NANOT); contains Interpro domain(s) IPR004765 Niemann-Pick C type protein "; GO:0005515 NbS00023719g0005.1 protein AED:0.17 eAED:0.17 QI:172|0.93|1|1|0.8|0.87|16|11|484; (*GB) gi|297804594|ref|XP_002870181.1| (e_value=0.0) hypothetical protein ARALYDRAFT_355153 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O23461|ARAK_ARATH (e_value=4e-127) L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1;; (*TAIR) AT3G42850.1 (e_value=0.0) | Symbols: | Mevalonate/galactokinase family protein | chr3:14940114-14945291 REVERSE LENGTH=964;; (*ITAG) Solyc07g016170.2.1 (e_value=2e-141) genomic_reference:SL2.40ch07 gene_region:6369032-6386695 transcript_region:SL2.40ch07:6369032..6386695+ go_terms:GO:0004335,GO:0009702 functional_description:"Galactokinase like protein (AHRD V1 **** O23461_ARATH); contains Interpro domain(s) IPR012369 Galactokinase, glycosyltransferase "; GO:0004335,GO:0009702 NbS00011453g0008.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.5|1|0.66|0.75|4|0|198; (*GB) gi|217073322|gb|ACJ85020.1| (e_value=2e-69) unknown [Medicago truncatula];; (*SWP) sp|P50165|TRNH_DATST (e_value=4e-36) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT5G06060.1 (e_value=4e-47) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc03g096640.2.1 (e_value=1e-64) genomic_reference:SL2.40ch03 gene_region:52336333-52339563 transcript_region:SL2.40ch03:52336333..52339563- go_terms:GO:0010301 functional_description:"Dehydrogenase/reductase SDR family member 4 (AHRD V1 **-* DHRS4_RABIT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00014087g0001.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.71|1|1|1|7|0|411; (*GB) gi|350536037|ref|NP_001234738.1| (e_value=0.0) PYD1A protein [Solanum lycopersicum];; (*SWP) sp|P25889|PREA_ECOLI (e_value=1e-78) NAD-dependent dihydropyrimidine dehydrogenase subunit PreA OS=Escherichia coli (strain K12) GN=preA PE=1 SV=3;; (*TAIR) AT3G17810.1 (e_value=0.0) | Symbols: PYD1 | pyrimidine 1 | chr3:6094279-6096289 FORWARD LENGTH=426;; (*ITAG) Solyc03g097910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53734853-53738896 transcript_region:SL2.40ch03:53734853..53738896- go_terms:GO:0017113 functional_description:"Dihydroorotate dehydrogenase family protein (AHRD V1 **** D7L7W7_ARALY); contains Interpro domain(s) IPR005720 Dihydroorotate dehydrogenase, class 1, core "; GO:0017113 NbS00025074g0002.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|309; (*ITAG) Solyc10g039360.1.1 (e_value=1e-71) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:21302119-21303497 transcript_region:SL2.40ch10:21302119..21303497+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00007240g0005.1 protein AED:0.16 eAED:0.21 QI:0|0.81|0.83|1|0.90|0.83|12|176|289; (*GB) gi|18072805|emb|CAC80377.1| (e_value=3e-111) glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum];; (*SWP) sp|P09094|G3PC_TOBAC (e_value=1e-78) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1;; (*TAIR) AT1G16300.1 (e_value=2e-105) | Symbols: GAPCP-2 | glyceraldehyde-3-phosphate dehydrogenase of plastid 2 | chr1:5574433-5577406 FORWARD LENGTH=420;; (*ITAG) Solyc10g005510.2.1 (e_value=2e-115) genomic_reference:SL2.40ch10 gene_region:417823-423467 transcript_region:SL2.40ch10:417823..423467- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q8VWN9_CAPAN); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00007240g0013.1 protein AED:0.06 eAED:0.06 QI:116|1|1|1|0.76|0.64|14|275|421; (*GB) gi|359494563|ref|XP_002266113.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254368 [Vitis vinifera];; (*TAIR) AT1G16290.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). | chr1:5570938-5573538 REVERSE LENGTH=419;; (*ITAG) Solyc07g066640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65220148-65226629 transcript_region:SL2.40ch07:65220148..65226629- functional_description:"F3O9.9 protein (AHRD V1 ***- Q9SA28_ARATH); contains Interpro domain(s) IPR008258 Lytic transglycosylase-like, catalytic "; NbS00007240g0015.1 protein AED:0.09 eAED:0.10 QI:0|0.77|0.7|1|0.77|0.7|10|330|1167; (*GB) gi|297736134|emb|CBI24172.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=9e-48) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G16270.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:5563890-5568145 FORWARD LENGTH=1147;; (*ITAG) Solyc02g031860.2.1 (e_value=4e-167) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00027753g0003.1 protein AED:0.05 eAED:0.05 QI:135|1|0.71|1|1|1|7|0|792; (*GB) gi|166053040|emb|CAP69670.1| (e_value=0.0) vicilin [Solanum lycopersicum];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=4e-109) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT3G22640.1 (e_value=1e-76) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486;; (*ITAG) Solyc09g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63490155-63493319 transcript_region:SL2.40ch09:63490155..63493319- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00027753g0006.1 protein AED:0.06 eAED:0.06 QI:41|1|0.5|1|0|0|2|0|122; (*ITAG) Solyc03g044840.1.1 (e_value=9e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00011057g0117.1 protein AED:0.11 eAED:0.11 QI:29|1|0.83|1|0.4|0.5|6|332|186 NbS00011057g0124.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|0|0.66|3|0|235 NbS00011057g0125.1 protein AED:0.11 eAED:0.11 QI:112|0.55|0.6|1|0.55|0.4|10|1508|654 NbS00011057g0121.1 protein AED:0.20 eAED:0.20 QI:0|1|0.77|1|0.5|0.55|9|0|258 NbS00011057g0118.1 protein AED:0.26 eAED:0.26 QI:179|0.88|0.9|1|1|1|10|340|285 NbS00022570g0002.1 protein AED:0.01 eAED:0.01 QI:167|1|1|1|0.66|0.5|4|712|878; (*GB) gi|359472612|ref|XP_002280971.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268019 [Vitis vinifera];; (*TAIR) AT1G70750.1 (e_value=1e-79) | Symbols: | Protein of unknown function, DUF593 | chr1:26680728-26683147 REVERSE LENGTH=749;; (*ITAG) Solyc04g007870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1544722-1548298 transcript_region:SL2.40ch04:1544722..1548298+ functional_description:"IFA-binding protein (AHRD V1 *--- Q9ZTZ4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00022570g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|356540024|ref|XP_003538491.1| (e_value=3e-103) PREDICTED: alpha-soluble NSF attachment protein-like [Glycine max];; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=3e-104) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.2 (e_value=6e-100) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848213 REVERSE LENGTH=240;; (*ITAG) Solyc06g050770.2.1 (e_value=2e-121) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00022570g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|1165118|emb|CAA38535.1| (e_value=2e-65) cytochrome oxidase subunit I [Solanum lycopersicum];; (*SWP) sp|P60621|COX1_RAPSA (e_value=1e-59) Cytochrome c oxidase subunit 1 OS=Raphanus sativus GN=COX1 PE=3 SV=1;; (*ITAG) ATMG01360.1 (e_value=8e-61) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc07g019510.2.1 (e_value=2e-60) genomic_reference:SL2.40ch07 gene_region:11854353-11856013 transcript_region:SL2.40ch07:11854353..11856013- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00022570g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|1|1|6|0|244 NbS00027790g0012.1 protein AED:0.28 eAED:0.28 QI:0|1|0.6|1|0.75|0.6|5|407|301; (*GB) gi|225435305|ref|XP_002285123.1| (e_value=3e-115) PREDICTED: yrdC domain-containing protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q499R4|YRDC_RAT (e_value=5e-48) YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1;; (*TAIR) AT5G60590.2 (e_value=3e-112) | Symbols: | DHBP synthase RibB-like alpha/beta domain | chr5:24357066-24358443 FORWARD LENGTH=288;; (*ITAG) Solyc11g069360.1.1 (e_value=2e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51048276-51052497 transcript_region:SL2.40ch11:51048276..51052497+ functional_description:"Sua5/YciO/YrdC/YwlC family protein (AHRD V1 ***- B1L6Z2_KORCO); contains Interpro domain(s) IPR004388 Sua5/YciO/YrdC/YwlC "; NbS00027790g0008.1 protein AED:0.33 eAED:0.33 QI:0|1|0.66|1|1|1|3|294|325; (*GB) gi|255552283|ref|XP_002517186.1| (e_value=6e-163) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q06136|KDSR_HUMAN (e_value=3e-60) 3-ketodihydrosphingosine reductase OS=Homo sapiens GN=KDSR PE=1 SV=1;; (*TAIR) AT3G06060.1 (e_value=4e-153) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:1828296-1830160 REVERSE LENGTH=326;; (*ITAG) Solyc06g054340.1.1 (e_value=3e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33633622-33634588 transcript_region:SL2.40ch06:33633622..33634588- go_terms:GO:0004668 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A9B3A1_HERA2); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004668 NbS00027790g0007.1 protein AED:0.27 eAED:0.44 QI:0|0|0.5|1|0|0.5|2|17|72 NbS00003260g0003.1 protein AED:0.00 eAED:0.00 QI:62|1|1|1|1|1|2|264|121; (*GB) gi|270313170|gb|ACZ73652.1| (e_value=5e-15) glycine-rich protein precursor [Nicotiana tabacum]; NbS00017494g0011.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|0.5|0.33|3|0|471; (*GB) gi|225446871|ref|XP_002283883.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100259123 [Vitis vinifera];; (*TAIR) AT2G42840.1 (e_value=1e-34) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306;; (*ITAG) Solyc10g007800.2.1 (e_value=4e-44) genomic_reference:SL2.40ch10 gene_region:2025768-2027379 transcript_region:SL2.40ch10:2025768..2027379+ functional_description:"Meiosis 5 (AHRD V1 *-*- B6T5X0_MAIZE)"; NbS00017494g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|1|1|3|0|277; (*GB) gi|147816954|emb|CAN71058.1| (e_value=1e-15) hypothetical protein VITISV_030011 [Vitis vinifera];; (*TAIR) AT3G58840.2 (e_value=1e-14) | Symbols: | Tropomyosin-related | chr3:21757499-21758455 REVERSE LENGTH=318;; (*ITAG) Solyc07g056370.2.1 (e_value=1e-69) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00017494g0010.1 protein AED:0.30 eAED:0.30 QI:275|0.5|0.66|1|1|1|3|351|80 NbS00017494g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|342; (*GB) gi|224067960|ref|XP_002302619.1| (e_value=2e-150) predicted protein [Populus trichocarpa];; (*TAIR) AT3G58800.1 (e_value=5e-128) | Symbols: | unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21748562-21749596 FORWARD LENGTH=344;; (*ITAG) Solyc07g055940.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:61188419-61189444 transcript_region:SL2.40ch07:61188419..61189444+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q019U2_OSTTA)"; NbS00017494g0013.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|224066581|ref|XP_002302147.1| (e_value=8e-21) cytochrome P450 [Populus trichocarpa];; (*TAIR) AT2G42850.1 (e_value=5e-21) | Symbols: CYP718 | cytochrome P450, family 718 | chr2:17831662-17833309 FORWARD LENGTH=485;; (*ITAG) Solyc07g055970.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61200877-61202548 transcript_region:SL2.40ch07:61200877..61202548+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00050489g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|350538567|ref|NP_001234861.1| (e_value=2e-20) uncharacterized protein LOC543739 precursor [Solanum lycopersicum];; (*SWP) sp|Q04189|TAP1_ANTMA (e_value=2e-14) Protein TAP1 OS=Antirrhinum majus GN=TAP1 PE=2 SV=1;; (*ITAG) Solyc06g064480.2.1 (e_value=9e-27) genomic_reference:SL2.40ch06 gene_region:36542401-36544270 transcript_region:SL2.40ch06:36542401..36544270- functional_description:"Protein TAP1 (AHRD V1 -**- TAP1_ANTMA)"; NbS00009784g0001.1 protein AED:0.14 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|498; (*GB) gi|224057042|ref|XP_002299116.1| (e_value=0.0) neutral amino acid transport protein [Populus trichocarpa];; (*SWP) sp|O34739|STET_BACSU (e_value=3e-13) Serine/threonine exchanger SteT OS=Bacillus subtilis (strain 168) GN=steT PE=1 SV=1;; (*TAIR) AT3G13620.1 (e_value=4e-165) | Symbols: | Amino acid permease family protein | chr3:4450904-4452556 REVERSE LENGTH=478;; (*ITAG) Solyc01g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:600898-602616 transcript_region:SL2.40ch01:600898..602616- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00009784g0007.1 protein AED:0.15 eAED:0.19 QI:0|0|0|1|0|0|2|0|269; (*GB) gi|358635024|dbj|BAL22345.1| (e_value=2e-123) oxidoreductase [Ipomoea batatas];; (*SWP) sp|Q7XZQ8|FNSI_PETCR (e_value=3e-34) Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1;; (*TAIR) AT3G13610.1 (e_value=2e-103) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc10g026520.1.1 (e_value=1e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:14957874-14959146 transcript_region:SL2.40ch10:14957874..14959146- go_terms:GO:0045431 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00035504g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|209; (*ITAG) Solyc11g012560.1.1 (e_value=7e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5372792-5373607 transcript_region:SL2.40ch11:5372792..5373607+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00035504g0003.1 protein AED:0.30 eAED:0.30 QI:141|1|0.66|1|0.5|0.66|3|0|150; (*ITAG) Solyc11g012540.1.1 (e_value=5e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00022632g0021.1 protein AED:0.10 eAED:0.10 QI:204|1|1|1|0|0.2|5|379|219; (*GB) gi|224120032|ref|XP_002318225.1| (e_value=1e-84) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=7e-37) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT5G52270.1 (e_value=1e-59) | Symbols: | SNARE-like superfamily protein | chr5:21221643-21222600 REVERSE LENGTH=214;; (*ITAG) Solyc03g025860.2.1 (e_value=7e-115) genomic_reference:SL2.40ch03 gene_region:7634618-7636770 transcript_region:SL2.40ch03:7634618..7636770+ go_terms:GO:0005484 functional_description:"Vesicle-trafficking protein SEC22b (AHRD V1 **-- C1BXX2_ESOLU); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00022632g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0.6|1|1|1|5|0|207; (*GB) gi|34925093|sp|P93788.1|REMO_SOLTU (e_value=8e-84) RecName: Full=Remorin; AltName: Full=pp34;; (*SWP) sp|P93788|REMO_SOLTU (e_value=2e-85) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=8e-66) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc03g025850.2.1 (e_value=3e-75) genomic_reference:SL2.40ch03 gene_region:7627656-7630095 transcript_region:SL2.40ch03:7627656..7630095+ go_terms:GO:0003677 functional_description:"Remorin 1 (AHRD V1 ***- Q9XEX8_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00022632g0019.1 protein AED:0.30 eAED:0.30 QI:477|0.75|0.8|1|0.75|0.6|5|338|201; (*GB) gi|224136998|ref|XP_002322468.1| (e_value=7e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L856|ACFR1_ARATH (e_value=1e-81) Transmembrane ascorbate ferrireductase 1 OS=Arabidopsis thaliana GN=CYB561A PE=1 SV=1;; (*TAIR) AT4G25570.1 (e_value=8e-83) | Symbols: ACYB-2 | Cytochrome b561/ferric reductase transmembrane protein family | chr4:13053887-13055518 REVERSE LENGTH=239;; (*ITAG) Solyc03g025840.2.1 (e_value=4e-110) genomic_reference:SL2.40ch03 gene_region:7619088-7621646 transcript_region:SL2.40ch03:7619088..7621646+ go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00022632g0004.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|224129442|ref|XP_002320587.1| (e_value=5e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT1G76065.1 (e_value=1e-36) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr1:28544899-28545306 REVERSE LENGTH=80; NbS00022632g0017.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|272; (*GB) gi|225470163|ref|XP_002267853.1| (e_value=2e-87) PREDICTED: transcription factor LAF1 [Vitis vinifera];; (*SWP) sp|Q9M0K4|LAF1_ARATH (e_value=1e-58) Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2;; (*TAIR) AT5G52260.1 (e_value=2e-61) | Symbols: AtMYB19, MYB19 | myb domain protein 19 | chr5:21220165-21221223 FORWARD LENGTH=268;; (*ITAG) Solyc03g025870.2.1 (e_value=3e-142) genomic_reference:SL2.40ch03 gene_region:7636896-7639652 transcript_region:SL2.40ch03:7636896..7639652- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00008677g0012.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|135; (*GB) gi|255555325|ref|XP_002518699.1| (e_value=4e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g009650.2.1 (e_value=7e-45) genomic_reference:SL2.40ch05 gene_region:3851818-3852763 transcript_region:SL2.40ch05:3851818..3852763+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008677g0010.1 protein AED:0.14 eAED:0.14 QI:123|1|0.90|1|0.9|0.90|11|0|490; (*GB) gi|359472703|ref|XP_002282030.2| (e_value=0.0) PREDICTED: transcription factor HBP-1b(c1)-like [Vitis vinifera];; (*SWP) sp|Q9SX27|PAN_ARATH (e_value=2e-134) Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1;; (*TAIR) AT1G68640.1 (e_value=2e-135) | Symbols: PAN | bZIP transcription factor family protein | chr1:25769739-25772303 REVERSE LENGTH=452;; (*ITAG) Solyc05g009660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3852729-3858146 transcript_region:SL2.40ch05:3852729..3858146- go_terms:GO:0005515,GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003700 NbS00008677g0011.1 protein AED:0.22 eAED:0.22 QI:217|0.62|0.44|1|0.12|0.44|9|0|426; (*GB) gi|225423919|ref|XP_002282011.1| (e_value=0.0) PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera];; (*SWP) sp|Q869R1|CTLHB_DICDI (e_value=1e-17) CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1;; (*TAIR) AT1G25500.1 (e_value=1e-163) | Symbols: | Plasma-membrane choline transporter family protein | chr1:8955595-8957793 REVERSE LENGTH=432;; (*ITAG) Solyc05g009670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3865942-3872602 transcript_region:SL2.40ch05:3865942..3872602- functional_description:"Choline transporter-like protein (AHRD V1 **-- Q6EP45_ORYSJ); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00058895g0007.1 protein AED:0.14 eAED:0.15 QI:309|0.75|0.6|1|0.75|0.8|5|0|718; (*GB) gi|225449212|ref|XP_002279619.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251255 [Vitis vinifera];; (*TAIR) AT2G39950.1 (e_value=3e-98) | Symbols: | unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). | chr2:16676758-16680204 REVERSE LENGTH=636;; (*ITAG) Solyc05g052630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61990786-61996229 transcript_region:SL2.40ch05:61990786..61996229- functional_description:"Unknown Protein (AHRD V1)"; NbS00058895g0006.1 protein AED:0.07 eAED:0.16 QI:62|0|0|1|0|0.25|4|0|337; (*GB) gi|225423802|ref|XP_002277905.1| (e_value=6e-180) PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=5e-164) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT1G26150.1 (e_value=4e-165) | Symbols: ATPERK10, PERK10 | proline-rich extensin-like receptor kinase 10 | chr1:9039790-9042873 REVERSE LENGTH=762;; (*ITAG) Solyc05g010140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4310407-4314499 transcript_region:SL2.40ch05:4310407..4314499- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00044074g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|225452173|ref|XP_002270738.1| (e_value=7e-61) PREDICTED: uncharacterized protein LOC100249110 [Vitis vinifera];; (*TAIR) AT3G48510.1 (e_value=7e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63350.1); Has 98 Blast hits to 98 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17967568-17968452 REVERSE LENGTH=294;; (*ITAG) Solyc02g068030.1.1 (e_value=2e-142) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32661807-32662649 transcript_region:SL2.40ch02:32661807..32662649- functional_description:"Unknown Protein (AHRD V1)"; NbS00032767g0009.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.66|0.66|0.5|0.33|3|635|121 NbS00032767g0011.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|65; (*ITAG) Solyc11g067080.1.1 (e_value=9e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49907176-49912437 transcript_region:SL2.40ch11:49907176..49912437+ go_terms:GO:0006468 functional_description:"Protein kinase like protein (AHRD V1 ***- Q0WN21_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013965g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0|0.75|1|1|4|0|519; (*GB) gi|225439168|ref|XP_002268382.1| (e_value=0.0) PREDICTED: xylogalacturonan beta-1,3-xylosyltransferase [Vitis vinifera];; (*SWP) sp|Q94AA9|XGD1_ARATH (e_value=6e-19) Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2;; (*TAIR) AT3G45400.1 (e_value=0.0) | Symbols: | exostosin family protein | chr3:16651963-16653479 FORWARD LENGTH=475;; (*ITAG) Solyc10g081430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61818805-61821211 transcript_region:SL2.40ch10:61818805..61821211- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 **-- D7LML7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00013965g0009.1 protein AED:0.38 eAED:0.39 QI:0|0|0.25|0.5|0.33|0.5|4|0|114; (*GB) gi|357519099|ref|XP_003629838.1| (e_value=3e-54) 39S ribosomal protein L46 [Medicago truncatula];; (*TAIR) AT1G14620.1 (e_value=3e-50) | Symbols: DECOY | decoy | chr1:5014948-5016501 REVERSE LENGTH=233;; (*ITAG) Solyc09g075370.2.1 (e_value=1e-63) genomic_reference:SL2.40ch09 gene_region:62589136-62593044 transcript_region:SL2.40ch09:62589136..62593044+ functional_description:"Mitochondrial ribosomal protein L46 (AHRD V1 ***- B0X635_CULQU)"; NbS00013965g0126.1 protein AED:0.09 eAED:0.09 QI:47|1|1|1|0.83|0.85|7|383|780 NbS00013965g0132.1 protein AED:0.22 eAED:0.31 QI:30|0|0|0.66|0|0.33|3|0|172 NbS00013965g0128.1 protein AED:0.00 eAED:0.00 QI:58|1|1|1|1|1|2|1731|329 NbS00013965g0129.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.85|0.95|0.9|0.90|21|543|790 NbS00013965g0139.1 protein AED:0.54 eAED:0.79 QI:0|0|0|1|1|0.33|3|0|126 NbS00013965g0137.1 protein AED:0.25 eAED:0.28 QI:0|0|0|1|0|0|7|0|709 NbS00013965g0138.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|0|0|3|0|202 NbS00013965g0131.1 protein AED:0.49 eAED:0.56 QI:0|0|0|1|0|0|4|0|154 NbS00013965g0133.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|133 NbS00013965g0134.1 protein AED:0.47 eAED:0.51 QI:0|0|0|1|0|0|2|0|78 NbS00013965g0136.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|0|0|2|0|75 NbS00013965g0135.1 protein AED:0.48 eAED:0.69 QI:0|0|0|1|0|0|2|0|61 NbS00001222g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|285; (*GB) gi|129560505|dbj|BAF48803.1| (e_value=2e-129) wound-responsive AP2 like factor 1 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=2e-26) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=1e-27) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc01g108240.2.1 (e_value=4e-88) genomic_reference:SL2.40ch01 gene_region:87368287-87369574 transcript_region:SL2.40ch01:87368287..87369574+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00047943g0001.1 protein AED:0.18 eAED:0.18 QI:266|0.8|0.90|1|0.9|0.81|11|370|386; (*GB) gi|728628|emb|CAA88493.1| (e_value=0.0) TAF-3 [Nicotiana tabacum];; (*SWP) sp|Q99089|CPRF1_PETCR (e_value=4e-92) Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1;; (*TAIR) AT2G46270.1 (e_value=1e-54) | Symbols: GBF3 | G-box binding factor 3 | chr2:19000859-19002901 FORWARD LENGTH=382;; (*ITAG) Solyc05g050220.2.1 (e_value=6e-174) genomic_reference:SL2.40ch05 gene_region:59415665-59420568 transcript_region:SL2.40ch05:59415665..59420568+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00021922g0014.1 protein AED:0.14 eAED:0.15 QI:34|0.5|0.2|1|0.75|0.6|5|0|537; (*GB) gi|225443564|ref|XP_002273268.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243518 [Vitis vinifera];; (*TAIR) AT1G28520.2 (e_value=0.0) | Symbols: VOZ1 | vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486;; (*ITAG) Solyc10g008880.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2920272-2924119 transcript_region:SL2.40ch10:2920272..2924119- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)"; GO:0016563 NbS00021922g0013.1 protein AED:0.19 eAED:0.19 QI:152|1|1|1|0.66|0.75|4|178|193; (*GB) gi|225446505|ref|XP_002278607.1| (e_value=4e-72) PREDICTED: OPA3-like protein [Vitis vinifera];; (*TAIR) AT1G28510.1 (e_value=7e-64) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc02g077470.2.1 (e_value=8e-83) genomic_reference:SL2.40ch02 gene_region:36976056-36983200 transcript_region:SL2.40ch02:36976056..36983200- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00021922g0015.1 protein AED:0.39 eAED:0.39 QI:154|0.5|1|1|0|0|3|365|65; (*GB) gi|359483957|ref|XP_003633044.1| (e_value=8e-16) PREDICTED: transcription elongation factor 1 homolog isoform 2 [Vitis vinifera]; NbS00041013g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.71|0.5|1|0.71|0.62|8|0|774; (*GB) gi|225464716|ref|XP_002263052.1| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9MA15|Y1960_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1 SV=1;; (*TAIR) AT1G79600.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29950105-29952516 REVERSE LENGTH=711;; (*ITAG) Solyc04g083010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64056480-64061311 transcript_region:SL2.40ch04:64056480..64061311- go_terms:GO:0006468 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENTR); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0006468 NbS00034649g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.75|0.75|1|1|4|0|152; (*GB) gi|225441611|ref|XP_002276818.1| (e_value=2e-70) PREDICTED: adenylyl-sulfate kinase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|O49204|KAPS_CATRO (e_value=2e-49) Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1;; (*TAIR) AT3G03900.1 (e_value=8e-68) | Symbols: APK3 | adenosine-5'-phosphosulfate (APS) kinase 3 | chr3:1002975-1004271 REVERSE LENGTH=208;; (*ITAG) Solyc10g080680.1.1 (e_value=1e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61217572-61219659 transcript_region:SL2.40ch10:61217572..61219659- go_terms:GO:0000103 functional_description:"Adenylyl-sulfate kinase (AHRD V1 ***- B9SHF5_RICCO); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0000103 NbS00034649g0004.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.5|1|1|2|0|73 NbS00034649g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0.5|0.33|3|0|263; (*GB) gi|224145996|ref|XP_002325841.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g080670.1.1 (e_value=4e-67) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61213437-61215170 transcript_region:SL2.40ch10:61213437..61215170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018717g0003.1 protein AED:0.00 eAED:0.00 QI:30|0|0.5|1|0|0.5|2|105|209; (*GB) gi|225455388|ref|XP_002272899.1| (e_value=2e-80) PREDICTED: germin-like protein 11-1 [Vitis vinifera];; (*SWP) sp|Q2R352|GL111_ORYSJ (e_value=6e-69) Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1;; (*TAIR) AT5G61750.1 (e_value=2e-66) | Symbols: | RmlC-like cupins superfamily protein | chr5:24812804-24813436 REVERSE LENGTH=210;; (*ITAG) Solyc07g065330.2.1 (e_value=6e-123) genomic_reference:SL2.40ch07 gene_region:64364298-64365651 transcript_region:SL2.40ch07:64364298..64365651- go_terms:GO:0050162 functional_description:"Germin-like protein 15 (AHRD V1 ***- C7S8C9_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00018717g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|38350581|gb|AAR18403.1| (e_value=2e-149) serine acetyltransferase [Nicotiana plumbaginifolia];; (*SWP) sp|Q39218|SAT3_ARATH (e_value=1e-77) Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3;; (*TAIR) AT3G13110.1 (e_value=9e-79) | Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M, SERAT2;2 | serine acetyltransferase 2;2 | chr3:4214939-4216114 REVERSE LENGTH=391;; (*ITAG) Solyc07g065340.1.1 (e_value=3e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64367108-64368103 transcript_region:SL2.40ch07:64367108..64368103- go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00018717g0008.1 protein AED:0.31 eAED:0.51 QI:0|0|0|1|0|0|2|0|131 NbS00022270g0015.1 protein AED:0.15 eAED:0.15 QI:0|1|0.6|1|1|0.8|5|0|209; (*GB) gi|255552073|ref|XP_002517081.1| (e_value=2e-121) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*TAIR) AT1G04190.1 (e_value=2e-117) | Symbols: TPR3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1106617-1108557 REVERSE LENGTH=328;; (*ITAG) Solyc09g082540.2.1 (e_value=3e-138) genomic_reference:SL2.40ch09 gene_region:63657303-63663270 transcript_region:SL2.40ch09:63657303..63663270+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 28 (AHRD V1 *--- TTC28_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022270g0011.1 protein AED:0.12 eAED:0.12 QI:765|0.81|0.83|0.91|0.81|0.83|12|202|475; (*GB) gi|224107955|ref|XP_002314667.1| (e_value=0.0) sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Populus trichocarpa];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=0.0) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=0.0) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc09g082550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63664022-63669862 transcript_region:SL2.40ch09:63664022..63669862- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00022270g0010.1 protein AED:0.23 eAED:0.60 QI:34|0|0|1|0|0|2|119|14 NbS00055891g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|192; (*GB) gi|156915045|gb|ABU97107.1| (e_value=2e-142) MYB305 protein v1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=2e-106) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT3G27810.1 (e_value=2e-86) | Symbols: ATMYB21, ATMYB3, MYB21 | myb domain protein 21 | chr3:10307596-10310093 FORWARD LENGTH=226;; (*ITAG) Solyc02g067760.2.1 (e_value=2e-122) genomic_reference:SL2.40ch02 gene_region:32454233-32457848 transcript_region:SL2.40ch02:32454233..32457848- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B8YIB6_MIRJA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00030205g0005.1 protein AED:0.19 eAED:0.20 QI:3|0|0|1|1|1|3|0|185; (*GB) gi|356521096|ref|XP_003529194.1| (e_value=3e-64) PREDICTED: cytochrome P450 71D11-like [Glycine max];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=4e-63) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=3e-53) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc08g005650.2.1 (e_value=1e-77) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044770g0005.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|2|0|156; (*GB) gi|225442611|ref|XP_002284502.1| (e_value=8e-76) PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Vitis vinifera];; (*SWP) sp|P46607|HGL2_ARATH (e_value=2e-65) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.1 (e_value=1e-66) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747;; (*ITAG) Solyc03g120620.2.1 (e_value=5e-91) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00048697g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|561|437; (*GB) gi|297734117|emb|CBI15364.3| (e_value=9e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=2e-29) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT5G08139.1 (e_value=9e-55) | Symbols: | RING/U-box superfamily protein | chr5:2616487-2617617 FORWARD LENGTH=376;; (*ITAG) Solyc03g114680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58636757-58640560 transcript_region:SL2.40ch03:58636757..58640560- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_BOVIN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00048697g0006.1 protein AED:0.00 eAED:0.00 QI:473|1|1|1|0.5|0.2|5|218|142; (*GB) gi|255547063|ref|XP_002514589.1| (e_value=6e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g114670.2.1 (e_value=3e-49) genomic_reference:SL2.40ch03 gene_region:58632193-58636537 transcript_region:SL2.40ch03:58632193..58636537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012318g0005.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0|3|0|401; (*GB) gi|224143443|ref|XP_002324958.1| (e_value=3e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|O48788|Y2267_ARATH (e_value=1e-112) Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1;; (*TAIR) AT2G26730.1 (e_value=9e-114) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658;; (*ITAG) Solyc03g111670.2.1 (e_value=2e-130) genomic_reference:SL2.40ch03 gene_region:56365106-56368947 transcript_region:SL2.40ch03:56365106..56368947- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbC26045227g0004.1 protein AED:0.07 eAED:0.14 QI:0|1|0|1|1|1|2|0|258; (*GB) gi|255586237|ref|XP_002533773.1| (e_value=1e-53) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SA82|BH052_ARATH (e_value=6e-28) Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1;; (*TAIR) AT1G30670.1 (e_value=5e-29) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10879311-10880188 REVERSE LENGTH=264;; (*ITAG) Solyc08g075110.1.1 (e_value=2e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56431587-56432571 transcript_region:SL2.40ch08:56431587..56432571- go_terms:GO:0003700 functional_description:"Transcription factor LAX PANICLE (AHRD V1 *--* LAX_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00025334g0006.1 protein AED:0.09 eAED:0.09 QI:44|1|1|1|1|1|10|282|465; (*GB) gi|225444999|ref|XP_002282931.1| (e_value=0.0) PREDICTED: histone acetyltransferase type B catalytic subunit [Vitis vinifera];; (*SWP) sp|Q9FJT8|HATB_ARATH (e_value=2e-177) Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2 PE=2 SV=1;; (*TAIR) AT5G56740.1 (e_value=2e-178) | Symbols: HAG2, HAC7, HAG02, HAC07 | histone acetyltransferase of the GNAT family 2 | chr5:22953009-22955577 REVERSE LENGTH=467;; (*ITAG) Solyc02g068580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33120854-33122260 transcript_region:SL2.40ch02:33120854..33122260+ go_terms:GO:0010485 functional_description:"Histone acetyltransferase type B catalytic subunit (AHRD V1 **** D3PHV3_9MAXI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010485 NbS00025334g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0|0|3|398|86; (*GB) gi|224091367|ref|XP_002309235.1| (e_value=8e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G26240.1 (e_value=3e-37) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13287011-13288896 REVERSE LENGTH=198;; (*ITAG) Solyc08g041690.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:26771943-26772133 transcript_region:SL2.40ch08:26771943..26772133+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025334g0002.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|1|1|2|0|100; (*GB) gi|1173027|sp|P46290.1|RL31_NICGU (e_value=8e-43) RecName: Full=60S ribosomal protein L31;; (*SWP) sp|P46290|RL31_NICGU (e_value=2e-44) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT5G56710.1 (e_value=6e-42) | Symbols: | Ribosomal protein L31e family protein | chr5:22944003-22944767 REVERSE LENGTH=119;; (*ITAG) Solyc12g008720.1.1 (e_value=3e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2087594-2089246 transcript_region:SL2.40ch12:2087594..2089246+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00015108g0004.1 protein AED:0.21 eAED:0.26 QI:89|0.33|0.25|1|1|1|4|0|187; (*GB) gi|359490767|ref|XP_003634163.1| (e_value=9e-62) PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q94JX9|NACA2_ARATH (e_value=3e-56) Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2;; (*TAIR) AT3G49470.1 (e_value=3e-57) | Symbols: NACA2 | nascent polypeptide-associated complex subunit alpha-like protein 2 | chr3:18341072-18342273 FORWARD LENGTH=217;; (*ITAG) Solyc03g080160.2.1 (e_value=6e-63) genomic_reference:SL2.40ch03 gene_region:45598367-45600275 transcript_region:SL2.40ch03:45598367..45600275- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6SU89_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00014153g0001.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|67 NbS00044261g0001.1 protein AED:0.33 eAED:0.38 QI:0|1|0.5|1|0|0|2|259|333; (*GB) gi|115607074|gb|ABJ16351.1| (e_value=2e-174) cytokinesis negative regulator RCP1 [Nicotiana tabacum];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=3e-22) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G60080.1 (e_value=1e-33) | Symbols: | RING/U-box superfamily protein | chr3:22187635-22188555 FORWARD LENGTH=306;; (*ITAG) Solyc06g072270.2.1 (e_value=7e-25) genomic_reference:SL2.40ch06 gene_region:40940777-40951100 transcript_region:SL2.40ch06:40940777..40951100- go_terms:GO:0008270 functional_description:"RING finger protein 24 (AHRD V1 *--- RNF24_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000861g0007.1 protein AED:0.27 eAED:0.27 QI:128|0.22|0.3|0.8|0.55|0.8|10|186|253; (*GB) gi|147773895|emb|CAN69547.1| (e_value=5e-54) hypothetical protein VITISV_005614 [Vitis vinifera];; (*TAIR) AT1G07840.3 (e_value=2e-31) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426131 FORWARD LENGTH=279;; (*ITAG) Solyc04g076560.2.1 (e_value=2e-65) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00000861g0002.1 protein AED:0.38 eAED:0.38 QI:421|1|0.90|1|0.5|0.63|11|0|285; (*GB) gi|255572868|ref|XP_002527366.1| (e_value=8e-99) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24460.2 (e_value=4e-93) | Symbols: CLT2 | CRT (chloroquine-resistance transporter)-like transporter 2 | chr4:12642888-12645310 FORWARD LENGTH=431;; (*ITAG) Solyc04g076570.2.1 (e_value=8e-138) genomic_reference:SL2.40ch04 gene_region:59067558-59075096 transcript_region:SL2.40ch04:59067558..59075096- functional_description:"Crt homolog 3 (AHRD V1 ***- CRTP3_DICDI)"; NbS00000861g0104.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|192|87 NbS00000861g0201.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|192 NbS00005375g0015.1 protein AED:0.11 eAED:0.13 QI:0|0.85|0.5|1|1|0.87|8|0|1379; (*GB) gi|359472758|ref|XP_002276237.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242423 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=2e-45) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT2G35050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr2:14769708-14774796 FORWARD LENGTH=1257;; (*ITAG) Solyc02g031860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00005375g0013.1 protein AED:0.22 eAED:0.22 QI:166|0.66|0.71|1|0.66|0.71|7|378|345; (*GB) gi|194216574|ref|XP_001490317.2| (e_value=7e-180) PREDICTED: eukaryotic initiation factor 4A-III [Equus caballus];; (*SWP) sp|P41380|IF4A3_NICPL (e_value=2e-178) Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT3G19760.1 (e_value=4e-134) | Symbols: EIF4A-III | eukaryotic initiation factor 4A-III | chr3:6863790-6866242 FORWARD LENGTH=408;; (*ITAG) Solyc11g033280.1.1 (e_value=3e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:22986368-22991947 transcript_region:SL2.40ch11:22986368..22991947- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase FAL1 (AHRD V1 ***- A8NX16_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00005375g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.25|1|1|4|0|134; (*GB) gi|296083215|emb|CBI22851.3| (e_value=1e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G49540.1 (e_value=4e-31) | Symbols: | Rab5-interacting family protein | chr5:20104804-20105609 REVERSE LENGTH=114;; (*ITAG) Solyc01g058280.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:58787500-58791252 transcript_region:SL2.40ch01:58787500..58791252- functional_description:"Transmembrane protein 93 (AHRD V1 ***- B0WGS0_CULQU); contains Interpro domain(s) IPR008504 Protein of unknown function DUF786 "; NbS00005375g0011.1 protein AED:0.45 eAED:0.61 QI:0|0.4|0|1|1|0.83|6|0|444; (*GB) gi|300827402|gb|ADK36643.1| (e_value=1e-116) MAPKKKe [Nicotiana benthamiana];; (*SWP) sp|Q8T2I8|SEPA_DICDI (e_value=3e-34) Serine/threonine-protein kinase sepA OS=Dictyostelium discoideum GN=sepA PE=2 SV=1;; (*TAIR) AT3G13530.1 (e_value=2e-94) | Symbols: MAPKKK7, MAP3KE1 | mitogen-activated protein kinase kinase kinase 7 | chr3:4411934-4419320 REVERSE LENGTH=1368;; (*ITAG) Solyc11g033270.1.1 (e_value=2e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:22947724-22983117 transcript_region:SL2.40ch11:22947724..22983117+ go_terms:GO:0016301 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 *-** B2W0T3_PYRTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00034611g0001.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|676; (*GB) gi|22087131|gb|AAM90848.1|AF481952_1 (e_value=0.0) hairy meristem [Petunia x hybrida];; (*SWP) sp|O81316|SCL6_ARATH (e_value=1e-72) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=9e-74) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc08g078800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59683241-59684665 transcript_region:SL2.40ch08:59683241..59684665- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GVG4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00008590g0007.1 protein AED:0.36 eAED:0.36 QI:201|0.9|0.81|0.90|0.9|1|11|0|434; (*GB) gi|225447336|ref|XP_002274263.1| (e_value=3e-71) PREDICTED: zinc finger CCCH domain-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q6H7U2|C3H13_ORYSJ (e_value=2e-44) Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=Os02g0161200 PE=2 SV=1;; (*TAIR) AT3G21810.1 (e_value=3e-35) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr3:7684852-7688360 FORWARD LENGTH=437;; (*ITAG) Solyc12g005770.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:415079-426833 transcript_region:SL2.40ch12:415079..426833- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 13 (AHRD V1 ***- C3H13_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00008590g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.5|0.83|0.4|0.5|6|0|159; (*GB) gi|356550004|ref|XP_003543380.1| (e_value=3e-82) PREDICTED: peroxisome biogenesis protein 22-like [Glycine max];; (*SWP) sp|Q9LSX7|PEX22_ARATH (e_value=3e-79) Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1;; (*TAIR) AT3G21865.1 (e_value=2e-80) | Symbols: PEX22 | peroxin 22 | chr3:7701308-7703218 REVERSE LENGTH=283;; (*ITAG) Solyc12g005760.1.1 (e_value=4e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:402796-411288 transcript_region:SL2.40ch12:402796..411288+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 **-- Q9LSX7_ARATH)"; NbS00012591g0005.1 protein AED:0.33 eAED:0.33 QI:409|0.87|1|1|0.12|0.22|9|326|187; (*GB) gi|350537617|ref|NP_001234557.1| (e_value=1e-73) ubiquitin conjugating enzyme 2 [Solanum lycopersicum];; (*SWP) sp|Q9SHI7|UBC34_ARATH (e_value=3e-54) Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1;; (*TAIR) AT1G17280.2 (e_value=2e-55) | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 | chr1:5917146-5919162 REVERSE LENGTH=237;; (*ITAG) Solyc06g063100.2.1 (e_value=2e-83) genomic_reference:SL2.40ch06 gene_region:36248969-36252485 transcript_region:SL2.40ch06:36248969..36252485+ go_terms:GO:0004842 functional_description:"Ubiquitin conjugating enzyme 2 (AHRD V1 **** Q94FU3_SOLLC); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00023128g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|269; (*GB) gi|225442757|ref|XP_002280670.1| (e_value=3e-84) PREDICTED: gibberellin 3-beta-dioxygenase 3 [Vitis vinifera];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=2e-15) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT1G52800.1 (e_value=8e-71) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067870.2.1 (e_value=7e-73) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00046317g0006.1 protein AED:0.20 eAED:0.21 QI:31|0.7|0.36|1|0.8|0.63|11|0|714; (*GB) gi|296089339|emb|CBI39111.3| (e_value=6e-112) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G06440.3 (e_value=8e-91) | Symbols: | BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr5:1964641-1966807 REVERSE LENGTH=479;; (*ITAG) Solyc10g081770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62095810-62099028 transcript_region:SL2.40ch10:62095810..62099028- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00046317g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|761; (*GB) gi|255540135|ref|XP_002511132.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=1e-51) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT5G50780.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc10g081760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00014431g0006.1 protein AED:0.17 eAED:0.21 QI:20|0|0|1|0.25|0|5|0|766; (*GB) gi|225462116|ref|XP_002263233.1| (e_value=2e-135) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=8e-72) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT1G45616.1 (e_value=1e-105) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc12g013680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4509060-4511957 transcript_region:SL2.40ch12:4509060..4511957- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00014431g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|166; (*GB) gi|224116970|ref|XP_002331797.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPB4|PSKR1_DAUCA (e_value=9e-16) Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1;; (*TAIR) AT2G33060.1 (e_value=2e-23) | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808;; (*ITAG) Solyc12g009780.1.1 (e_value=8e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2989659-2995094 transcript_region:SL2.40ch12:2989659..2995094+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00005124g0001.1 protein AED:0.05 eAED:0.09 QI:202|1|0.5|1|0|0.5|2|0|839; (*GB) gi|359490110|ref|XP_002278447.2| (e_value=1e-165) PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5-like [Vitis vinifera];; (*SWP) sp|Q8VZ17|SUVH6_ARATH (e_value=2e-138) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6 PE=2 SV=2;; (*TAIR) AT2G22740.1 (e_value=1e-139) | Symbols: SUVH6, SDG23 | SU(VAR)3-9 homolog 6 | chr2:9664256-9666628 REVERSE LENGTH=790;; (*ITAG) Solyc03g093700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48774527-48778274 transcript_region:SL2.40ch03:48774527..48778274- go_terms:GO:0046974 functional_description:"Histone-lysine N-methyltransferase, H3 lysine-9 specific 5 (AHRD V1 *-** EHMT1_HUMAN); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0046974 NbS00010949g0002.1 protein AED:0.45 eAED:0.45 QI:0|0.66|0.75|0.75|1|1|4|157|110; (*GB) gi|225423633|ref|XP_002275152.1| (e_value=2e-34) PREDICTED: thioredoxin O1, mitochondrial [Vitis vinifera];; (*SWP) sp|O64764|TRXO1_ARATH (e_value=2e-28) Thioredoxin O1, mitochondrial OS=Arabidopsis thaliana GN=At2g35010 PE=2 SV=1;; (*TAIR) AT2G35010.2 (e_value=2e-29) | Symbols: ATO1, TO1 | thioredoxin O1 | chr2:14754398-14755888 FORWARD LENGTH=194;; (*ITAG) Solyc02g068500.2.1 (e_value=5e-45) genomic_reference:SL2.40ch02 gene_region:33023030-33030517 transcript_region:SL2.40ch02:33023030..33030517+ go_terms:GO:0045454 functional_description:"Thioredoxin o (AHRD V1 *-*- B9MUN0_POPTR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00001479g0007.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|224065128|ref|XP_002301682.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=3e-40) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT1G66180.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24647221-24648513 FORWARD LENGTH=430;; (*ITAG) Solyc05g051240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60666717-60668060 transcript_region:SL2.40ch05:60666717..60668060+ go_terms:GO:0008233 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0008233 NbS00001479g0021.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|3|0|298; (*GB) gi|255585566|ref|XP_002533472.1| (e_value=7e-139) ATRAD3, putative [Ricinus communis];; (*TAIR) AT4G01240.1 (e_value=7e-51) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:517795-521972 REVERSE LENGTH=659;; (*ITAG) Solyc05g051210.2.1 (e_value=3e-166) genomic_reference:SL2.40ch05 gene_region:60619140-60620753 transcript_region:SL2.40ch05:60619140..60620753+ go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 **-- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00001479g0006.1 protein AED:0.15 eAED:0.15 QI:188|0.81|0.91|0.91|0.81|0.91|12|378|504; (*GB) gi|359483167|ref|XP_002263272.2| (e_value=0.0) PREDICTED: uncharacterized protein C1A6.10-like [Vitis vinifera];; (*SWP) sp|O13861|YEXA_SCHPO (e_value=4e-61) Uncharacterized protein C1A6.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1A6.10 PE=2 SV=1;; (*TAIR) AT5G37530.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=457;; (*ITAG) Solyc05g051230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60637189-60645931 transcript_region:SL2.40ch05:60637189..60645931+ go_terms:GO:0005515 functional_description:"Adenylyltransferase and sulfurtransferase MOCS3 (AHRD V1 *--- MOCS3_DROGR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0005515 NbS00001479g0023.1 protein AED:0.25 eAED:0.25 QI:348|0.84|0.78|0.92|0.61|0.64|14|0|863; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=0.0) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=0.0) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=0.0) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc05g051220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60621366-60632925 transcript_region:SL2.40ch05:60621366..60632925- go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00001479g0027.1 protein AED:0.29 eAED:0.39 QI:77|0|0|1|0|0|3|0|203; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-48) hypothetical protein [Nicotiana tabacum]; NbS00034885g0004.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|779; (*GB) gi|388540218|gb|AFK64817.1| (e_value=0.0) translation elongation factor 2 [Prunus persica];; (*SWP) sp|O23755|EF2_BETVU (e_value=0.0) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT3G12915.2 (e_value=0.0) | Symbols: | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:4112999-4115708 FORWARD LENGTH=767;; (*ITAG) Solyc08g062910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49531008-49535044 transcript_region:SL2.40ch08:49531008..49535044- go_terms:GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0003746 NbS00010113g0012.1 protein AED:0.31 eAED:0.31 QI:69|0.8|0.83|1|0.8|0.66|6|251|502; (*GB) gi|255558222|ref|XP_002520138.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00010113g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|494; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=0.0) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00018127g0007.1 protein AED:0.02 eAED:0.02 QI:36|1|1|1|1|1|4|275|355; (*GB) gi|357467173|ref|XP_003603871.1| (e_value=0.0) Cysteine proteinase [Medicago truncatula];; (*SWP) sp|O65493|XCP1_ARATH (e_value=0.0) Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1;; (*TAIR) AT4G35350.1 (e_value=0.0) | Symbols: XCP1 | xylem cysteine peptidase 1 | chr4:16810529-16811875 FORWARD LENGTH=355;; (*ITAG) Solyc04g082710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63891625-63893068 transcript_region:SL2.40ch04:63891625..63893068+ go_terms:GO:0030984,GO:0032403 functional_description:"Cathepsin B-like cysteine proteinase 3 (AHRD V1 **-- CPR3_CAEEL); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0030984,GO:0032403 NbS00018127g0005.1 protein AED:0.63 eAED:0.67 QI:0|0|0|0.25|1|1|4|0|72 NbS00029329g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|409; (*GB) gi|296085704|emb|CBI29503.3| (e_value=3e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G16790.1 (e_value=1e-16) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:9451747-9453168 REVERSE LENGTH=473;; (*ITAG) Solyc06g060820.1.1 (e_value=4e-101) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35238214-35239365 transcript_region:SL2.40ch06:35238214..35239365+ functional_description:"Glycoprotein homolog (AHRD V1 *-*- Q8LCM1_ARATH)"; NbS00035778g0010.1 protein AED:0.19 eAED:0.20 QI:0|0.75|0.4|1|1|1|5|0|363; (*GB) gi|224139714|ref|XP_002323241.1| (e_value=2e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NLB1|FB118_ARATH (e_value=1e-124) F-box protein At2g26850 OS=Arabidopsis thaliana GN=At2g26850 PE=2 SV=1;; (*TAIR) AT2G26850.1 (e_value=1e-125) | Symbols: | F-box family protein | chr2:11449369-11450889 REVERSE LENGTH=371;; (*ITAG) Solyc10g078410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59557930-59559668 transcript_region:SL2.40ch10:59557930..59559668- functional_description:"F-box family protein (AHRD V1 ***- B9GG65_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035778g0011.1 protein AED:0.22 eAED:0.23 QI:0|0.8|0.33|1|0.4|0.83|6|0|472; (*GB) gi|225440083|ref|XP_002282555.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251727 [Vitis vinifera];; (*TAIR) AT3G56750.1 (e_value=1e-165) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018326-21020192 REVERSE LENGTH=403;; (*ITAG) Solyc10g078400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59552414-59557141 transcript_region:SL2.40ch10:59552414..59557141+ functional_description:"Os03g0366700 protein (Fragment) (AHRD V1 *-*- Q0DRP4_ORYSJ)"; NbS00050196g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.69|1|0.83|0.92|13|0|727; (*GB) gi|225444686|ref|XP_002277641.1| (e_value=0.0) PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera];; (*SWP) sp|Q5TIE3|VW5B1_HUMAN (e_value=4e-13) von Willebrand factor A domain-containing protein 5B1 OS=Homo sapiens GN=VWA5B1 PE=1 SV=2;; (*TAIR) AT1G19110.1 (e_value=0.0) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc12g009160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2466301-2472612 transcript_region:SL2.40ch12:2466301..2472612+ functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 *-*- B5JSY7_9GAMM); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00007007g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|933; (*GB) gi|350535939|ref|NP_001234733.1| (e_value=0.0) verticillium wilt disease resistance protein Ve2 precursor [Solanum lycopersicum];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=7e-95) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05650.1 (e_value=3e-99) | Symbols: AtRLP32, RLP32 | receptor like protein 32 | chr3:1645884-1648490 REVERSE LENGTH=868;; (*ITAG) Solyc09g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:48645-52064 transcript_region:SL2.40ch09:48645..52064- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00000827g0005.1 protein AED:0.34 eAED:0.35 QI:0|0.8|0.72|1|0.5|0.54|11|408|359; (*GB) gi|225433644|ref|XP_002264430.1| (e_value=2e-154) PREDICTED: 30S ribosomal protein S1 homolog [Vitis vinifera];; (*SWP) sp|P29344|RR1_SPIOL (e_value=1e-16) 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1;; (*TAIR) AT3G23700.1 (e_value=9e-134) | Symbols: | Nucleic acid-binding proteins superfamily | chr3:8531689-8533742 REVERSE LENGTH=392;; (*ITAG) Solyc09g097910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67170569-67174662 transcript_region:SL2.40ch09:67170569..67174662+ go_terms:GO:0042380 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 *--- PNP_ALHEH); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0042380 NbS00000827g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|224142903|ref|XP_002324772.1| (e_value=5e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74120.1 (e_value=4e-91) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:27871923-27873260 REVERSE LENGTH=445;; (*ITAG) Solyc09g097920.1.1 (e_value=2e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00061291g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|152; (*GB) gi|224129190|ref|XP_002320523.1| (e_value=8e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|O23310|NFYB3_ARATH (e_value=3e-76) Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1;; (*TAIR) AT4G14540.1 (e_value=2e-77) | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161;; (*ITAG) Solyc12g006120.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:682575-683183 transcript_region:SL2.40ch12:682575..683183- go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 *-*- B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00035812g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|15240799|ref|NP_196367.1| (e_value=3e-54) zinc finger CCCH domain-containing protein 54 [Arabidopsis thaliana];; (*SWP) sp|O65036|C3H54_ARATH (e_value=7e-56) Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana GN=PEI1 PE=1 SV=1;; (*TAIR) AT5G07500.1 (e_value=6e-57) | Symbols: PEI1 | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:2372716-2373453 FORWARD LENGTH=245;; (*ITAG) Solyc05g052060.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61550626-61551480 transcript_region:SL2.40ch05:61550626..61551480+ functional_description:"Zinc finger CCCH domain-containing protein 54 (AHRD V1 *-*- C3H54_ARATH)"; NbS00003023g0003.1 protein AED:0.34 eAED:0.34 QI:146|0.8|0.83|1|0.2|0.66|6|408|293; (*GB) gi|225447131|ref|XP_002274696.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100244748 [Vitis vinifera];; (*TAIR) AT2G32980.1 (e_value=4e-143) | Symbols: | unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:13997569-13999715 REVERSE LENGTH=296;; (*ITAG) Solyc08g013990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3397948-3408923 transcript_region:SL2.40ch08:3397948..3408923- functional_description:"HAUS augmin-like complex subunit 2 (AHRD V1 *-*- HAUS2_HUMAN)"; NbS00003023g0008.1 protein AED:0.08 eAED:0.08 QI:439|1|1|1|0.66|0.85|7|337|234; (*GB) gi|225434010|ref|XP_002272798.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera];; (*TAIR) AT3G07565.3 (e_value=3e-64) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=259;; (*ITAG) Solyc08g013980.2.1 (e_value=2e-129) genomic_reference:SL2.40ch08 gene_region:3394296-3397841 transcript_region:SL2.40ch08:3394296..3397841+ functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *--- Q9SRQ9_ARATH)"; NbS00011300g0002.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|0|0|2|580|272; (*GB) gi|297736440|emb|CBI25311.3| (e_value=2e-113) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5R5F1|PRPF3_PONAB (e_value=3e-42) U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1;; (*TAIR) AT1G28060.1 (e_value=2e-100) | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786;; (*ITAG) Solyc06g036580.2.1 (e_value=5e-134) genomic_reference:SL2.40ch06 gene_region:23374815-23378066 transcript_region:SL2.40ch06:23374815..23378066- go_terms:GO:0005515 functional_description:"U4/U6 small nuclear ribonucleoprotein Prp3 (AHRD V1 ***- C1N1Y8_MICPS); contains Interpro domain(s) IPR013881 Pre-mRNA-splicing factor 3 "; GO:0005515 NbS00011300g0001.1 protein AED:0.31 eAED:0.33 QI:0|0.6|0.16|1|1|1|6|0|608; (*GB) gi|297736440|emb|CBI25311.3| (e_value=4e-170) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5ZJ85|PRPF3_CHICK (e_value=3e-11) U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1;; (*TAIR) AT1G28060.1 (e_value=1e-118) | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786;; (*ITAG) Solyc06g036580.2.1 (e_value=2e-170) genomic_reference:SL2.40ch06 gene_region:23374815-23378066 transcript_region:SL2.40ch06:23374815..23378066- go_terms:GO:0005515 functional_description:"U4/U6 small nuclear ribonucleoprotein Prp3 (AHRD V1 ***- C1N1Y8_MICPS); contains Interpro domain(s) IPR013881 Pre-mRNA-splicing factor 3 "; GO:0005515 NbS00054761g0001.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|174 NbS00037955g0009.1 protein AED:0.26 eAED:0.26 QI:1284|1|0.83|1|0.8|0.83|6|0|615; (*GB) gi|225456747|ref|XP_002275852.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT2-like [Vitis vinifera];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc06g069870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39892312-39896352 transcript_region:SL2.40ch06:39892312..39896352+ functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00037955g0011.1 protein AED:0.23 eAED:0.26 QI:227|1|0.75|1|0.66|0.5|4|0|429; (*GB) gi|225456751|ref|XP_002275944.1| (e_value=1e-169) PREDICTED: activating signal cointegrator 1 [Vitis vinifera];; (*SWP) sp|Q15650|TRIP4_HUMAN (e_value=7e-23) Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4;; (*TAIR) AT3G47610.1 (e_value=1e-144) | Symbols: | transcription regulators;zinc ion binding | chr3:17549178-17551204 FORWARD LENGTH=408;; (*ITAG) Solyc03g116140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59688614-59692801 transcript_region:SL2.40ch03:59688614..59692801+ go_terms:GO:0005634 functional_description:"Activating signal cointegrator 1 (AHRD V1 **-- C3KH38_ANOFI); contains Interpro domain(s) IPR009349 Zinc finger, C2HC5-type "; GO:0005634 NbS00037955g0012.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|435; (*GB) gi|297733990|emb|CBI15237.3| (e_value=7e-72) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SWI1|PKS1_ARATH (e_value=1e-24) Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2;; (*TAIR) AT2G02950.1 (e_value=1e-25) | Symbols: PKS1 | phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439;; (*ITAG) Solyc03g116160.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59702667-59704016 transcript_region:SL2.40ch03:59702667..59704016+ functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; NbS00037955g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|232; (*GB) gi|297733983|emb|CBI15230.3| (e_value=8e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CA57|GSTUA_ARATH (e_value=4e-64) Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1;; (*TAIR) AT1G74590.1 (e_value=3e-65) | Symbols: ATGSTU10, GSTU10 | glutathione S-transferase TAU 10 | chr1:28023887-28024666 REVERSE LENGTH=232;; (*ITAG) Solyc03g116130.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59686636-59687514 transcript_region:SL2.40ch03:59686636..59687514- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 12 (AHRD V1 **** Q4LAW7_CAPCH); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00003250g0031.1 protein AED:0.12 eAED:0.12 QI:0|0|0.33|1|0|0|3|0|138; (*GB) gi|57013934|ref|YP_173407.1| (e_value=4e-57) hypothetical protein NitaMp063 [Nicotiana tabacum]; NbS00003250g0017.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=3e-58) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=9e-60) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=6e-42) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=4e-59) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00003250g0004.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|1|2|0|164; (*GB) gi|224100539|ref|XP_002311915.1| (e_value=3e-14) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSM2|MDLL_ARATH (e_value=5e-14) (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1;; (*TAIR) AT1G73050.1 (e_value=4e-15) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc11g039970.1.1 (e_value=7e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003250g0013.1 protein AED:0.60 eAED:0.67 QI:0|0|0|0.4|1|1|5|0|145; (*ITAG) Solyc11g039350.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23160122-23160442 transcript_region:SL2.40ch11:23160122..23160442- functional_description:"Unknown Protein (AHRD V1)"; NbS00003250g0011.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.25|1|1|4|0|148; (*ITAG) Solyc11g045150.1.1 (e_value=4e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36827293-36827571 transcript_region:SL2.40ch11:36827293..36827571+ functional_description:"Uncharacterized mitochondrial protein AtMg00030 (AHRD V1 ***- M030_ARATH)"; NbS00003250g0042.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|205; (*GB) gi|356524158|ref|XP_003530699.1| (e_value=1e-31) PREDICTED: uncharacterized mitochondrial protein AtMg01410-like [Glycine max];; (*SWP) sp|P92543|M1110_ARATH (e_value=2e-31) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=1e-32) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g028150.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00003250g0006.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|61097780|emb|CAI64462.1| (e_value=2e-49) NADH-Ubiquinone oxidoreductase subunit 7 [Nicotiana sylvestris];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-49) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=9e-44) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-50) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00003250g0025.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.25|1|1|4|0|163; (*GB) gi|57013989|ref|YP_173461.1| (e_value=3e-59) hypothetical protein NitaMp123 [Nicotiana tabacum]; NbS00003250g0040.1 protein AED:0.47 eAED:0.68 QI:0|0|0|0.66|0.2|0.16|6|0|296; (*GB) gi|57013986|ref|YP_173458.1| (e_value=5e-55) hypothetical protein NitaMp120 [Nicotiana tabacum]; NbS00003250g0039.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.33|0|0.33|3|0|111; (*GB) gi|57013987|ref|YP_173459.1| (e_value=1e-18) ATP synthase F1 subunit 1 [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=3e-20) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=1e-15) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507; NbS00003250g0041.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|230; (*GB) gi|164685598|gb|ABY66745.1| (e_value=3e-73) atp1, partial (mitochondrion) [Garrya elliptica];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=1e-73) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=4e-72) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00003250g0038.1 protein AED:0.38 eAED:0.55 QI:0|0|0|1|0|0|3|0|187; (*GB) gi|187236912|gb|ACD02139.1| (e_value=1e-56) F1-ATPase alpha subunit [Gaiadendron punctatum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=9e-56) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=6e-53) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc00g042130.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00003250g0043.1 protein AED:0.04 eAED:0.14 QI:0|0|0|1|0|0|3|0|182; (*GB) gi|57013971|ref|YP_173443.1| (e_value=1e-91) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00003250g0036.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|297740917|emb|CBI31099.3| (e_value=6e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=3e-47) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-44) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc01g065810.1.1 (e_value=3e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:64800051-64800539 transcript_region:SL2.40ch01:64800051..64800539+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00003250g0033.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|97; (*GB) gi|57013977|ref|YP_173449.1| (e_value=1e-58) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00003250g0037.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|86 NbS00026762g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|88 NbS00026762g0005.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|144; (*TAIR) AT3G61660.1 (e_value=2e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22816152-22816541 FORWARD LENGTH=129;; (*ITAG) Solyc00g040490.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13164389-13164757 transcript_region:SL2.40ch00:13164389..13164757+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026762g0019.1 protein AED:0.22 eAED:0.22 QI:165|1|1|1|1|1|4|219|575; (*GB) gi|86212374|gb|ABC87760.1| (e_value=0.0) jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00026762g0018.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.66|1|0.8|0.66|6|249|998; (*GB) gi|255586545|ref|XP_002533909.1| (e_value=4e-172) hypothetical protein RCOM_0237030 [Ricinus communis];; (*TAIR) AT2G46380.1 (e_value=3e-99) | Symbols: | Protein of unknown function (DUF3133) | chr2:19039377-19042171 FORWARD LENGTH=768;; (*ITAG) Solyc01g095590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00026762g0022.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|713; (*GB) gi|359475162|ref|XP_003631603.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Vitis vinifera];; (*SWP) sp|Q9LHN5|PP242_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1;; (*TAIR) AT3G18840.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:6496198-6498234 FORWARD LENGTH=678;; (*ITAG) Solyc01g095600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78575599-78578845 transcript_region:SL2.40ch01:78575599..78578845+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00026762g0020.1 protein AED:0.46 eAED:0.54 QI:0|0|0|1|0.5|0.66|3|0|187; (*GB) gi|307136361|gb|ADN34175.1| (e_value=4e-11) hypothetical protein [Cucumis melo subsp. melo];; (*ITAG) Solyc01g095590.2.1 (e_value=6e-46) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00004692g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|378; (*GB) gi|225447887|ref|XP_002273325.1| (e_value=6e-133) PREDICTED: uncharacterized protein LOC100257164 [Vitis vinifera];; (*TAIR) AT5G64090.1 (e_value=3e-121) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25648069-25649415 FORWARD LENGTH=448;; (*ITAG) Solyc10g047210.1.1 (e_value=4e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35670364-35670867 transcript_region:SL2.40ch10:35670364..35670867+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018619 Hyccin "; NbS00004692g0104.1 protein AED:0.06 eAED:0.06 QI:8|0.33|0.25|0.75|0.33|0.25|4|0|464 NbS00004692g0209.1 protein AED:0.30 eAED:0.44 QI:0|0.11|0.1|1|0.55|0.5|10|0|702 NbS00004692g0212.1 protein AED:0.22 eAED:0.39 QI:0|0|0|1|0|0.5|4|0|263 NbS00006007g0001.1 protein AED:0.13 eAED:0.13 QI:175|1|0.5|1|0|0.5|2|0|398; (*GB) gi|224133722|ref|XP_002327664.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBI7|FB130_ARATH (e_value=1e-18) F-box protein At2g40910 OS=Arabidopsis thaliana GN=At2g40910 PE=2 SV=1;; (*TAIR) AT2G40910.2 (e_value=7e-20) | Symbols: | F-box and associated interaction domains-containing protein | chr2:17069938-17071501 REVERSE LENGTH=442;; (*ITAG) Solyc04g064440.1.1 (e_value=4e-169) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54700323-54701546 transcript_region:SL2.40ch04:54700323..54701546- functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00030671g0005.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.25|1|1|4|0|132; (*GB) gi|224125852|ref|XP_002329733.1| (e_value=6e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53345.1 (e_value=2e-55) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). | chr1:19902561-19903538 FORWARD LENGTH=325;; (*ITAG) Solyc03g098180.2.1 (e_value=3e-80) genomic_reference:SL2.40ch03 gene_region:53969222-53976124 transcript_region:SL2.40ch03:53969222..53976124+ go_terms:GO:0006468 functional_description:"Phosphoesterase dhha1 (AHRD V1 ***- A2A059_9BACT)"; GO:0006468 NbS00030671g0007.1 protein AED:0.08 eAED:0.08 QI:397|1|1|1|0.5|0.66|3|49|137; (*GB) gi|359491819|ref|XP_002270576.2| (e_value=3e-54) PREDICTED: NAC domain-containing protein 74 [Vitis vinifera];; (*SWP) sp|Q9M274|NAC66_ARATH (e_value=3e-12) NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1;; (*TAIR) AT3G17730.1 (e_value=4e-43) | Symbols: anac057, NAC057 | NAC domain containing protein 57 | chr3:6064379-6065813 FORWARD LENGTH=246;; (*ITAG) Solyc03g098190.2.1 (e_value=2e-72) genomic_reference:SL2.40ch03 gene_region:53977592-53982305 transcript_region:SL2.40ch03:53977592..53982305- go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00051320g0002.1 protein AED:0.04 eAED:0.20 QI:0|0|0|1|0|0|2|130|334; (*GB) gi|147818878|emb|CAN73778.1| (e_value=2e-32) hypothetical protein VITISV_042179 [Vitis vinifera];; (*SWP) sp|O49508|FB237_ARATH (e_value=1e-32) F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1;; (*TAIR) AT4G18380.2 (e_value=1e-33) | Symbols: | F-box family protein | chr4:10157957-10159099 FORWARD LENGTH=380;; (*ITAG) Solyc08g048430.2.1 (e_value=6e-36) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037695g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.75|4|371|538; (*GB) gi|225427989|ref|XP_002277761.1| (e_value=0.0) PREDICTED: choline transporter-like protein 3 [Vitis vinifera];; (*SWP) sp|Q54IJ2|CTLHA_DICDI (e_value=9e-11) CTL-like protein DDB_G0288717 OS=Dictyostelium discoideum GN=DDB_G0288717 PE=3 SV=1;; (*TAIR) AT4G38640.1 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr4:18059884-18062091 REVERSE LENGTH=556;; (*ITAG) Solyc01g111370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89403105-89407443 transcript_region:SL2.40ch01:89403105..89407443+ functional_description:"Choline transporter like family (AHRD V1 *-*- C1FD31_9CHLO); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00037695g0004.1 protein AED:0.20 eAED:0.20 QI:146|0.33|0.5|1|1|1|4|0|148; (*GB) gi|388496012|gb|AFK36072.1| (e_value=2e-89) unknown [Lotus japonicus];; (*SWP) sp|Q9ZNT3|ADF5_ARATH (e_value=1e-80) Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1;; (*TAIR) AT2G16700.1 (e_value=8e-82) | Symbols: ADF5, ATADF5 | actin depolymerizing factor 5 | chr2:7244717-7245467 FORWARD LENGTH=143;; (*ITAG) Solyc01g111380.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:89410321-89411406 transcript_region:SL2.40ch01:89410321..89411406+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 5 (AHRD V1 **** A1XJ48_GOSHI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00028340g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|87 NbS00006242g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.25|0|1|0.75|0.8|5|0|589; (*GB) gi|254028670|gb|ACT53268.1| (e_value=0.0) transport inhibitor response 1 [Nicotiana tabacum];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=0.0) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=0.0) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc09g074520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00006242g0006.1 protein AED:0.18 eAED:0.18 QI:125|1|1|1|1|1|3|567|191; (*GB) gi|356505508|ref|XP_003521532.1| (e_value=3e-45) PREDICTED: uncharacterized protein LOC100816761 [Glycine max];; (*TAIR) AT4G03180.1 (e_value=1e-30) | Symbols: | CONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink). | chr4:1403289-1404663 FORWARD LENGTH=185;; (*ITAG) Solyc06g084500.2.1 (e_value=4e-69) genomic_reference:SL2.40ch06 gene_region:45874013-45875152 transcript_region:SL2.40ch06:45874013..45875152- functional_description:"Unknown Protein (AHRD V1)"; NbS00006242g0010.1 protein AED:0.30 eAED:0.30 QI:199|1|1|1|0.09|0.33|12|317|287; (*GB) gi|225436781|ref|XP_002268410.1| (e_value=1e-147) PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=1e-75) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT3G62970.1 (e_value=2e-136) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:23270636-23272698 FORWARD LENGTH=287;; (*ITAG) Solyc06g084510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45879870-45887797 transcript_region:SL2.40ch06:45879870..45887797- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q2QP88_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00014608g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.66|1|0.5|0.66|3|429|365; (*GB) gi|225424176|ref|XP_002284096.1| (e_value=2e-178) PREDICTED: xylosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q5QQ53|XYLT_DROPS (e_value=5e-15) Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1;; (*TAIR) AT1G71070.1 (e_value=3e-162) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:26807440-26809152 REVERSE LENGTH=395;; (*ITAG) Solyc05g008340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2699143-2703279 transcript_region:SL2.40ch05:2699143..2703279- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00014608g0011.1 protein AED:0.13 eAED:0.13 QI:152|0.90|0.83|1|0.90|0.83|12|174|699; (*GB) gi|297737725|emb|CBI26926.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU35|AB7G_ARATH (e_value=0.0) ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1;; (*TAIR) AT2G01320.3 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:154487-158063 REVERSE LENGTH=728;; (*ITAG) Solyc05g008350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2707862-2717543 transcript_region:SL2.40ch05:2707862..2717543+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 7 (AHRD V1 **** AB7G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00014608g0007.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|1|1|2|0|92; (*GB) gi|224101811|ref|XP_002312430.1| (e_value=5e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01300.1 (e_value=2e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc05g008360.1.1 (e_value=5e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2720439-2720873 transcript_region:SL2.40ch05:2720439..2720873+ functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00004120g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0.2|1|0|0|5|91|230; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00006432g0020.1 protein AED:0.14 eAED:0.14 QI:0|0.85|0.86|1|0.78|0.66|15|354|521; (*GB) gi|357507939|ref|XP_003624258.1| (e_value=0.0) V-type ATP synthase beta chain [Medicago truncatula];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=0.0) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.5 (e_value=0.0) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494;; (*ITAG) Solyc01g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00006432g0019.1 protein AED:0.28 eAED:0.30 QI:0|0.66|0.64|1|0.63|0.74|31|0|817; (*GB) gi|359475006|ref|XP_002280484.2| (e_value=0.0) PREDICTED: transportin-1-like [Vitis vinifera];; (*SWP) sp|Q92973|TNPO1_HUMAN (e_value=1e-170) Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2;; (*TAIR) AT2G16950.2 (e_value=0.0) | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891;; (*ITAG) Solyc01g111780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89713800-89731648 transcript_region:SL2.40ch01:89713800..89731648+ go_terms:GO:0008320 functional_description:"Importin beta-2 subunit (AHRD V1 **-- C5JY88_AJEDS); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00006432g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.75|1|1|1|16|274|840; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5PNS9|P2C64_ARATH (e_value=0.0) Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00006432g0007.1 protein AED:0.84 eAED:0.87 QI:0|0|0|0.33|1|1|3|0|80 NbS00016999g0004.1 protein AED:0.13 eAED:0.13 QI:131|1|1|1|1|1|15|256|842; (*GB) gi|359480502|ref|XP_002271053.2| (e_value=0.0) PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5ZLV4|NSUN2_CHICK (e_value=4e-133) tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus GN=NSUN2 PE=2 SV=1;; (*TAIR) AT2G22400.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:9504823-9508788 REVERSE LENGTH=808;; (*ITAG) Solyc05g051520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61022340-61034738 transcript_region:SL2.40ch05:61022340..61034738+ go_terms:GO:0016428 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-** RSMF_SHEPW); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0016428 NbS00036006g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|255641569|gb|ACU21058.1| (e_value=1e-35) unknown [Glycine max];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=6e-16) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=5e-17) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc03g114440.1.1 (e_value=2e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58497410-58497949 transcript_region:SL2.40ch03:58497410..58497949- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 3 (AHRD V1 *-*- B6SM68_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00002850g0004.1 protein AED:0.34 eAED:0.34 QI:31|0.66|0.71|0.85|0.83|0.71|7|459|231; (*GB) gi|388520377|gb|AFK48250.1| (e_value=1e-60) unknown [Lotus japonicus];; (*SWP) sp|O82197|VP321_ARATH (e_value=5e-55) Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1;; (*TAIR) AT2G19830.1 (e_value=3e-56) | Symbols: SNF7.2, VPS32 | SNF7 family protein | chr2:8558101-8559389 REVERSE LENGTH=213;; (*ITAG) Solyc05g026050.2.1 (e_value=3e-71) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00002850g0003.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|1|1|3|0|155; (*GB) gi|224122628|ref|XP_002330529.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5D7|CAMT3_ARATH (e_value=8e-61) Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1;; (*TAIR) AT4G26220.1 (e_value=6e-62) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232;; (*ITAG) Solyc05g026330.1.1 (e_value=6e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40892670-40893409 transcript_region:SL2.40ch05:40892670..40893409- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A2PZD5_IPONI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00002850g0011.1 protein AED:0.43 eAED:0.43 QI:6|0.5|0.33|0.66|0|0|3|0|68 NbC24726616g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|0|0|2|0|145; (*GB) gi|356545390|ref|XP_003541126.1| (e_value=4e-42) PREDICTED: arginine decarboxylase-like [Glycine max];; (*SWP) sp|P37536|YAAO_BACSU (e_value=4e-17) Uncharacterized protein yaaO OS=Bacillus subtilis (strain 168) GN=yaaO PE=3 SV=1;; (*ITAG) Solyc07g016020.1.1 (e_value=2e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:6173926-6174489 transcript_region:SL2.40ch07:6173926..6174489+ go_terms:GO:0003824,GO:0030170 functional_description:"Decarboxylase (AHRD V1 ***- D7G8F2_ECTSI); contains Interpro domain(s) IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 "; GO:0003824,GO:0030170 NbS00024739g0001.1 protein AED:0.15 eAED:0.15 QI:232|0.87|0.88|1|0.87|0.77|9|680|394; (*GB) gi|224109894|ref|XP_002315346.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9P4X3|UTP7_SCHPO (e_value=1e-80) Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=2 SV=1;; (*TAIR) AT3G10530.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:3286277-3288670 FORWARD LENGTH=536;; (*ITAG) Solyc05g008190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2575652-2581304 transcript_region:SL2.40ch05:2575652..2581304- go_terms:GO:0030515,GO:0005515 functional_description:"WD repeat protein 46 (AHRD V1 **-- B0W308_CULQU); contains Interpro domain(s) IPR012952 BING4, C-terminal "; GO:0030515,GO:0005515 NbS00024739g0012.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|0|0.5|2|0|453; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-78) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-53) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=4e-51) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc11g020100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:10137088-10139788 transcript_region:SL2.40ch11:10137088..10139788- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00024739g0011.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|0|0|2|0|274; (*GB) gi|48209881|gb|AAT40487.1| (e_value=2e-16) putative disease resistance protein [Solanum demissum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=3e-16) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc12g017800.1.1 (e_value=2e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7412896-7415774 transcript_region:SL2.40ch12:7412896..7415774+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00024739g0013.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|127; (*GB) gi|190607685|gb|ACE79501.1| (e_value=6e-20) NBS-coding resistance gene analog [Nicotiana tabacum];; (*TAIR) AT3G46530.1 (e_value=1e-12) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc11g006640.1.1 (e_value=7e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1242256-1245275 transcript_region:SL2.40ch11:1242256..1245275+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00042930g0003.1 protein AED:0.12 eAED:0.12 QI:887|1|1|1|0.66|0.71|7|419|312; (*GB) gi|255553837|ref|XP_002517959.1| (e_value=9e-172) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03420.1 (e_value=2e-150) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc07g054270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59932385-59934770 transcript_region:SL2.40ch07:59932385..59934770- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00056357g0004.1 protein AED:0.42 eAED:0.42 QI:107|0.8|0.83|1|0.8|0.83|6|130|156; (*GB) gi|224095978|ref|XP_002310514.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|A0L5Z9|RL17_MAGSM (e_value=4e-38) 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1;; (*TAIR) AT5G64650.1 (e_value=3e-85) | Symbols: | Ribosomal protein L17 family protein | chr5:25839542-25840775 REVERSE LENGTH=160;; (*ITAG) Solyc08g067950.2.1 (e_value=1e-92) genomic_reference:SL2.40ch08 gene_region:54214925-54222004 transcript_region:SL2.40ch08:54214925..54222004+ go_terms:GO:0003735,GO:0019904 functional_description:"50S ribosomal protein L17 (AHRD V1 ***- Q8LC38_ARATH); contains Interpro domain(s) IPR000456 Ribosomal protein L17 "; GO:0003735,GO:0019904 NbS00001173g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|0.66|1|1|3|0|231; (*GB) gi|356536482|ref|XP_003536766.1| (e_value=2e-76) PREDICTED: WUSCHEL-related homeobox 13-like [Glycine max];; (*SWP) sp|Q5QMM3|WOX8_ORYSJ (e_value=2e-71) WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1;; (*TAIR) AT4G35550.1 (e_value=2e-69) | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268;; (*ITAG) Solyc02g082670.2.1 (e_value=1e-97) genomic_reference:SL2.40ch02 gene_region:40892965-40895886 transcript_region:SL2.40ch02:40892965..40895886- go_terms:GO:0003677 functional_description:"WUSCHEL-related homeobox 14 (AHRD V1 ***- B6T910_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677 NbS00001173g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.8|0.83|6|541|192; (*GB) gi|225431425|ref|XP_002273009.1| (e_value=3e-109) PREDICTED: cancer-related nucleoside-triphosphatase homolog [Vitis vinifera];; (*SWP) sp|Q9BSD7|NTPCR_HUMAN (e_value=4e-35) Cancer-related nucleoside-triphosphatase OS=Homo sapiens GN=NTPCR PE=1 SV=1;; (*TAIR) AT5G66005.3 (e_value=6e-94) | Symbols: | Expressed protein | chr5:26397864-26399123 REVERSE LENGTH=192;; (*ITAG) Solyc03g032120.2.1 (e_value=4e-129) genomic_reference:SL2.40ch03 gene_region:8904327-8911668 transcript_region:SL2.40ch03:8904327..8911668- go_terms:GO:0016740 functional_description:"Nucleoside-triphosphatase THEP1 (AHRD V1 ***- NTPTH_THEMA); contains Interpro domain(s) IPR004948 Protein of unknown function DUF265 "; GO:0016740 NbS00001173g0014.1 protein AED:0.24 eAED:0.24 QI:292|0.9|0.81|1|0.9|0.81|11|0|410; (*GB) gi|224081467|ref|XP_002306421.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G17500.4 (e_value=5e-168) | Symbols: | Auxin efflux carrier family protein | chr2:7607063-7608990 FORWARD LENGTH=396;; (*ITAG) Solyc02g082450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40726154-40728736 transcript_region:SL2.40ch02:40726154..40728736+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7L9F0_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00001173g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.75|1|1|4|0|246; (*GB) gi|296082558|emb|CBI21563.3| (e_value=2e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CH36|S36A4_MOUSE (e_value=9e-15) Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1;; (*TAIR) AT5G65990.1 (e_value=9e-65) | Symbols: | Transmembrane amino acid transporter family protein | chr5:26394955-26396321 FORWARD LENGTH=427;; (*ITAG) Solyc03g032090.1.1 (e_value=9e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8889972-8891255 transcript_region:SL2.40ch03:8889972..8891255+ go_terms:GO:0015187 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015187 NbS00002772g0003.1 protein AED:0.21 eAED:0.34 QI:160|0.5|0.66|1|0|0.33|3|0|81 NbS00002772g0014.1 protein AED:0.52 eAED:0.59 QI:0|0|0|0.25|1|1|4|0|185; (*ITAG) Solyc02g080560.1.1 (e_value=3e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39332307-39332603 transcript_region:SL2.40ch02:39332307..39332603- functional_description:"Unknown Protein (AHRD V1)"; NbS00002772g0005.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|3|0|143; (*GB) gi|231610|sp|P29790.1|ATPG_TOBAC (e_value=3e-20) RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P29790|ATPG_TOBAC (e_value=9e-22) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1;; (*TAIR) AT4G04640.1 (e_value=3e-19) | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373;; (*ITAG) Solyc02g080540.1.1 (e_value=2e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ go_terms:GO:0030234 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0030234 NbS00002772g0017.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|0.6|5|0|273; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00020449g0002.1 protein AED:0.09 eAED:0.09 QI:1426|1|1|1|0.45|0.56|23|198|526; (*GB) gi|359495648|ref|XP_002265379.2| (e_value=0.0) PREDICTED: chromosome transmission fidelity protein 18 homolog [Vitis vinifera];; (*SWP) sp|Q6NU40|CTF18_XENLA (e_value=3e-41) Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis GN=chtf18 PE=2 SV=1;; (*TAIR) AT1G04730.1 (e_value=1e-176) | Symbols: CTF18 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1325385-1331086 REVERSE LENGTH=943;; (*ITAG) Solyc09g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66227327-66243063 transcript_region:SL2.40ch09:66227327..66243063+ go_terms:GO:0003677 functional_description:"Replication factor C large subunit (AHRD V1 *-*- B8D4I5_DESK1); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0003677 NbS00014992g0013.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|505; (*GB) gi|351722020|ref|NP_001238509.1| (e_value=2e-72) uncharacterized protein LOC100306416 [Glycine max];; (*SWP) sp|P68428|H32_WHEAT (e_value=5e-74) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=6e-75) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008920.1.1 (e_value=2e-136) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:2937341-2938642 transcript_region:SL2.40ch10:2937341..2938642+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00014992g0018.1 protein AED:0.23 eAED:0.23 QI:279|1|1|1|0|0|6|194|89; (*GB) gi|115473523|ref|NP_001060360.1| (e_value=2e-44) Os07g0631100 [Oryza sativa Japonica Group];; (*SWP) sp|Q8LHP0|ELOF1_ORYSJ (e_value=6e-46) Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1;; (*TAIR) AT5G46030.1 (e_value=1e-37) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120;; (*ITAG) Solyc02g077440.2.1 (e_value=2e-47) genomic_reference:SL2.40ch02 gene_region:36959365-36961353 transcript_region:SL2.40ch02:36959365..36961353+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbS00014992g0005.1 protein AED:0.28 eAED:0.29 QI:517|0.66|0.5|1|1|1|4|0|408; (*GB) gi|297740442|emb|CBI30624.3| (e_value=1e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84KK5|D7OMT_GLYEC (e_value=2e-71) Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1;; (*TAIR) AT5G46060.1 (e_value=5e-57) | Symbols: | Protein of unknown function, DUF599 | chr5:18681533-18682459 FORWARD LENGTH=248;; (*ITAG) Solyc02g077540.2.1 (e_value=6e-116) genomic_reference:SL2.40ch02 gene_region:37012723-37014441 transcript_region:SL2.40ch02:37012723..37014441+ functional_description:"DUF599 family protein (AHRD V1 ***- D3BI28_POLPA); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00014992g0011.1 protein AED:0.55 eAED:0.55 QI:27|0|0.5|0.5|1|1|2|0|67; (*GB) gi|225443578|ref|XP_002273374.1| (e_value=8e-26) PREDICTED: uncharacterized protein LOC100250378 [Vitis vinifera];; (*TAIR) AT5G46060.1 (e_value=2e-15) | Symbols: | Protein of unknown function, DUF599 | chr5:18681533-18682459 FORWARD LENGTH=248;; (*ITAG) Solyc02g077550.2.1 (e_value=1e-31) genomic_reference:SL2.40ch02 gene_region:37013976-37014860 transcript_region:SL2.40ch02:37013976..37014860+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00014992g0025.1 protein AED:0.32 eAED:0.35 QI:63|0.25|0.2|1|0.5|0.4|5|198|459; (*GB) gi|225443564|ref|XP_002273268.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243518 [Vitis vinifera];; (*TAIR) AT1G28520.2 (e_value=0.0) | Symbols: VOZ1 | vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486;; (*ITAG) Solyc02g077450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36962132-36966974 transcript_region:SL2.40ch02:36962132..36966974- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)"; GO:0016563 NbS00014992g0021.1 protein AED:0.39 eAED:0.39 QI:0|0.75|0.6|1|1|1|5|0|218; (*GB) gi|224116272|ref|XP_002331941.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28510.1 (e_value=3e-57) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc02g077470.2.1 (e_value=2e-84) genomic_reference:SL2.40ch02 gene_region:36976056-36983200 transcript_region:SL2.40ch02:36976056..36983200- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00014992g0022.1 protein AED:0.23 eAED:0.56 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|312370061|gb|ADQ74388.1| (e_value=1e-17) NADH dehydrogenase subunit 5 [Hyoscyamus muticus];; (*SWP) sp|P06265|NU5C_TOBAC (e_value=2e-18) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Nicotiana tabacum GN=ndhF PE=3 SV=2;; (*ITAG) ATCG01010.1 (e_value=6e-14) | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=746;; (*ITAG) Solyc01g017090.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:23876221-23876888 transcript_region:SL2.40ch01:23876221..23876888+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit L (AHRD V1 *-*- NUOL_NEIMA); contains Interpro domain(s) IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup "; GO:0055114 NbS00005886g0047.1 protein AED:0.32 eAED:0.32 QI:115|1|1|1|0|0.5|2|37|41 NbS00005886g0058.1 protein AED:0.23 eAED:0.33 QI:0|0.25|0|1|0.25|0.4|5|0|167; (*GB) gi|359494218|ref|XP_002267511.2| (e_value=1e-45) PREDICTED: ABC transporter G family member 26-like [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=1e-31) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=8e-33) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=3e-71) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00005886g0053.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|1|1|2|0|89; (*ITAG) Solyc00g244290.1.1 (e_value=7e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00005886g0056.1 protein AED:0.60 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|71 NbS00005886g0062.1 protein AED:0.29 eAED:0.29 QI:0|0|0.33|0.33|0.5|0.66|3|499|102 NbS00005886g0050.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|6|0|469; (*GB) gi|57013955|ref|YP_173427.1| (e_value=3e-85) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=1e-77) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=4e-84) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=6e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00005886g0055.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|4|0|345; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=4e-53) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P15688|NU2M_BETVU (e_value=7e-27) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) ATMG01320.1 (e_value=3e-20) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244300.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19966946-19967203 transcript_region:SL2.40ch00:19966946..19967203+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005886g0057.1 protein AED:0.39 eAED:0.55 QI:0|0|0|1|0|0|4|0|267; (*GB) gi|147841236|emb|CAN64512.1| (e_value=1e-33) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|P15688|NU2M_BETVU (e_value=8e-20) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) ATMG01320.1 (e_value=4e-16) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g013120.2.1 (e_value=1e-23) genomic_reference:SL2.40ch00 gene_region:10672277-10673169 transcript_region:SL2.40ch00:10672277..10673169- functional_description:"Uncharacterized mitochondrial protein AtMg01330 (AHRD V1 *-*- M1330_ARATH)"; NbS00005886g0052.1 protein AED:0.34 eAED:0.38 QI:0|0|0|1|0|0|3|0|228; (*GB) gi|339773267|gb|AEK01290.1| (e_value=3e-65) nad7 [Arabidopsis thaliana];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=4e-66) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-67) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-67) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00005886g0051.1 protein AED:0.41 eAED:0.61 QI:0|0|0|1|0|0|5|0|207; (*GB) gi|147841236|emb|CAN64512.1| (e_value=9e-36) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|P15688|NU2M_BETVU (e_value=9e-23) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) Solyc10g062040.1.1 (e_value=9e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605388-54605612 transcript_region:SL2.40ch10:54605388..54605612+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00005886g0049.1 protein AED:0.19 eAED:0.50 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|57014018|ref|YP_173489.1| (e_value=1e-36) hypothetical protein NitaMp152 [Nicotiana tabacum]; NbS00005886g0048.1 protein AED:0.43 eAED:0.55 QI:78|0|0|1|0|0|2|0|105; (*GB) gi|377807000|ref|YP_005090430.1| (e_value=2e-20) nad7 gene product (mitochondrion) [Boea hygrometrica];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=5e-21) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=6e-21) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-23) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00005886g0181.1 protein AED:0.11 eAED:0.14 QI:0|0|0|1|0.25|0|5|0|409 NbS00005886g0153.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|107 NbS00005886g0176.1 protein AED:0.24 eAED:0.38 QI:0|0|0|1|0|0.33|3|0|220 NbS00005886g0120.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.2|1|1|5|0|268 NbS00005886g0128.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.75|1|1|4|0|198 NbS00005886g0164.1 protein AED:0.35 eAED:0.46 QI:0|0|0|1|0.5|0.33|3|0|282 NbS00005886g0129.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|70 NbS00005886g0123.1 protein AED:0.69 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|108 NbS00005886g0149.1 protein AED:0.52 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|108 NbS00005886g0145.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|80 NbS00005886g0157.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|0|0.33|3|0|141 NbS00005886g0134.1 protein AED:0.31 eAED:0.72 QI:0|0|0|1|1|1|2|0|138 NbS00005886g0171.1 protein AED:0.71 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|122 NbS00005886g0180.1 protein AED:0.29 eAED:0.37 QI:0|0|0|1|0|0|4|0|444 NbS00005886g0165.1 protein AED:0.26 eAED:0.35 QI:0|0|0|1|0|0|5|0|437 NbS00005886g0177.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|3|0|340 NbS00005886g0179.1 protein AED:0.50 eAED:0.77 QI:0|0|0|1|0|0|5|0|228 NbS00005886g0173.1 protein AED:0.25 eAED:1.00 QI:0|0|0|1|0|0|3|0|159 NbS00005886g0154.1 protein AED:0.28 eAED:0.64 QI:0|0|0|1|0|0|2|0|111 NbS00005886g0170.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0|0|2|0|104 NbS00005886g0166.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|0|0|2|0|66 NbS00005886g0161.1 protein AED:0.40 eAED:0.62 QI:0|0|0|1|0|0|2|0|63 NbS00005886g0210.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.75|0|0.5|4|0|176 NbS00005886g0208.1 protein AED:0.42 eAED:0.42 QI:804|0.66|0.75|1|0|0|4|0|100 NbS00038745g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0.5|1|3|0|222; (*GB) gi|255562558|ref|XP_002522285.1| (e_value=5e-93) Cyclic phosphodiesterase, putative [Ricinus communis];; (*SWP) sp|O04147|CPD_ARATH (e_value=4e-73) Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1;; (*TAIR) AT4G18930.1 (e_value=3e-74) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370797-10371885 FORWARD LENGTH=181;; (*ITAG) Solyc03g005930.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:628731-631838 transcript_region:SL2.40ch03:628731..631838- go_terms:GO:0004112,GO:0005622 functional_description:"Cyclic phosphodiesterase (AHRD V1 ***- D7M9D2_ARALY); contains Interpro domain(s) IPR012386 2 , 3 cyclic phosphodiesterase, plant "; GO:0004112,GO:0005622 NbS00056858g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|425; (*GB) gi|255545852|ref|XP_002513986.1| (e_value=2e-55) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=9e-45) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=7e-46) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc12g087860.1.1 (e_value=9e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003085g0001.1 protein AED:0.15 eAED:0.15 QI:227|0.75|0.8|1|0.5|0.6|5|210|148; (*GB) gi|147803507|emb|CAN68722.1| (e_value=1e-62) hypothetical protein VITISV_033681 [Vitis vinifera];; (*SWP) sp|O22165|RLP24_ARATH (e_value=4e-51) Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1;; (*TAIR) AT2G44860.2 (e_value=3e-52) | Symbols: | Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159;; (*ITAG) Solyc10g078660.1.1 (e_value=6e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59721816-59723828 transcript_region:SL2.40ch10:59721816..59723828+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- Q16LE3_AEDAE); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00037649g0006.1 protein AED:0.22 eAED:0.22 QI:3|1|0|1|0|0|2|0|92; (*GB) gi|356509751|ref|XP_003523609.1| (e_value=5e-53) PREDICTED: protein DCL, chloroplastic-like [Glycine max];; (*SWP) sp|Q42463|DCL_SOLLC (e_value=3e-26) Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1;; (*TAIR) AT3G46630.1 (e_value=2e-52) | Symbols: | Protein of unknown function (DUF3223) | chr3:17181138-17182346 REVERSE LENGTH=207;; (*ITAG) Solyc04g078480.2.1 (e_value=5e-61) genomic_reference:SL2.40ch04 gene_region:60806121-60812694 transcript_region:SL2.40ch04:60806121..60812694- functional_description:"DNA-directed RNA polymerase (Fragment) (AHRD V1 *-*- D7UBN7_VITVI)"; NbS00062126g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|396|73; (*GB) gi|296082089|emb|CBI21094.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=5e-30) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=7e-30) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=2e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00050662g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|297833948|ref|XP_002884856.1| (e_value=9e-74) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G11660.1 (e_value=4e-75) | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3679031-3679660 REVERSE LENGTH=209;; (*ITAG) Solyc01g007220.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:1800921-1801986 transcript_region:SL2.40ch01:1800921..1801986+ functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZM3_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00021234g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|167; (*GB) gi|2346986|dbj|BAA21927.1| (e_value=6e-38) ZPT3-3 [Petunia x hybrida];; (*ITAG) Solyc01g090840.2.1 (e_value=1e-50) genomic_reference:SL2.40ch01 gene_region:76304117-76306164 transcript_region:SL2.40ch01:76304117..76306164+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00034164g0012.1 protein AED:0.10 eAED:0.10 QI:1353|1|1|1|1|1|2|1264|126; (*GB) gi|147853795|emb|CAN81714.1| (e_value=1e-15) hypothetical protein VITISV_005816 [Vitis vinifera];; (*ITAG) Solyc06g005880.2.1 (e_value=1e-24) genomic_reference:SL2.40ch06 gene_region:884955-886387 transcript_region:SL2.40ch06:884955..886387- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00034164g0013.1 protein AED:0.44 eAED:0.68 QI:0|0|0|1|0|0.33|3|0|150; (*GB) gi|147843440|emb|CAN79970.1| (e_value=2e-16) hypothetical protein VITISV_043680 [Vitis vinifera];; (*TAIR) AT5G46330.1 (e_value=2e-12) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc06g006050.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1066684-1067610 transcript_region:SL2.40ch06:1066684..1067610- go_terms:GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004674 NbS00034164g0008.1 protein AED:0.21 eAED:0.21 QI:115|1|0.8|1|1|1|5|0|681; (*GB) gi|297737957|emb|CBI27158.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C8Q4|Y4990_ARATH (e_value=0.0) Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1;; (*TAIR) AT4G19900.1 (e_value=0.0) | Symbols: | alpha 1,4-glycosyltransferase family protein | chr4:10789144-10791433 REVERSE LENGTH=644;; (*ITAG) Solyc02g068790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33279149-33285537 transcript_region:SL2.40ch02:33279149..33285537+ go_terms:GO:0005795 functional_description:"Lactosylceramide 4-alpha-galactosyltransferase (AHRD V1 *-*- A4GAT_MOUSE); contains Interpro domain(s) IPR007652 Alpha 1,4-glycosyltransferase conserved region "; GO:0005795 NbS00019695g0009.1 protein AED:0.29 eAED:0.29 QI:721|0|0.5|1|0|0|2|349|119; (*GB) gi|364285599|gb|AEW48217.1| (e_value=7e-44) disease resistance protein RX5 [Solanum stenotomum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-18) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=4e-13) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc12g006040.1.1 (e_value=2e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:633525-634647 transcript_region:SL2.40ch12:633525..634647- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00019695g0003.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|117 NbS00055510g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|603; (*GB) gi|337255727|gb|AEI61930.1| (e_value=0.0) carotenoid cleavage dioxygenase 4 [Nicotiana tabacum];; (*SWP) sp|O49675|CCD4_ARATH (e_value=0.0) Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1;; (*TAIR) AT4G19170.1 (e_value=0.0) | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid dioxygenase 4 | chr4:10481835-10483622 FORWARD LENGTH=595;; (*ITAG) Solyc08g075490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56809898-56812517 transcript_region:SL2.40ch08:56809898..56812517- go_terms:GO:0005515 functional_description:"Carotenoid cleavage dioxygenase 4B"; GO:0005515 NbS00055510g0008.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|2|0|106; (*ITAG) Solyc01g017760.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046808g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc01g017760.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046808g0004.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc01g017760.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00054385g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.42|0.85|1|1|7|0|300; (*GB) gi|147822361|emb|CAN75170.1| (e_value=3e-149) hypothetical protein VITISV_041032 [Vitis vinifera];; (*SWP) sp|P53392|SUT2_STYHA (e_value=1e-133) High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=1e-129) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc04g072760.2.1 (e_value=1e-159) genomic_reference:SL2.40ch04 gene_region:57323894-57327409 transcript_region:SL2.40ch04:57323894..57327409+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00002858g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|1|1|1|4|0|234; (*GB) gi|224129330|ref|XP_002328947.1| (e_value=1e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|P37707|B2_DAUCA (e_value=3e-37) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G27090.1 (e_value=3e-45) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:9990020-9991407 FORWARD LENGTH=296;; (*ITAG) Solyc02g068120.2.1 (e_value=3e-97) genomic_reference:SL2.40ch02 gene_region:32736345-32741058 transcript_region:SL2.40ch02:32736345..32741058- functional_description:"Gda-1 (AHRD V1 **-- B6TDG4_MAIZE); contains Interpro domain(s) IPR013089 Kelch related "; NbS00002858g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0.5|0.33|3|0|569; (*GB) gi|356511807|ref|XP_003524614.1| (e_value=0.0) PREDICTED: SWI/SNF complex component SNF12 homolog [Glycine max];; (*SWP) sp|Q9FMT4|SNF12_ARATH (e_value=0.0) SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1;; (*TAIR) AT5G14170.1 (e_value=0.0) | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein | chr5:4568696-4570444 REVERSE LENGTH=534;; (*ITAG) Solyc02g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32726479-32729519 transcript_region:SL2.40ch02:32726479..32729519+ go_terms:GO:0003713 functional_description:"SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily d member 1 (AHRD V1 ***- Q802C8_DANRE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0003713 NbS00002858g0008.1 protein AED:0.32 eAED:0.32 QI:218|1|0.6|1|0.75|0.8|5|462|111; (*GB) gi|296082348|emb|CBI21353.3| (e_value=6e-53) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JIX0|ENY2_MOUSE (e_value=3e-27) Enhancer of yellow 2 transcription factor homolog OS=Mus musculus GN=Eny2 PE=2 SV=1;; (*TAIR) AT3G27100.1 (e_value=7e-44) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:9994743-9995923 REVERSE LENGTH=115;; (*ITAG) Solyc02g068110.2.1 (e_value=9e-39) genomic_reference:SL2.40ch02 gene_region:32730904-32734592 transcript_region:SL2.40ch02:32730904..32734592+ go_terms:GO:0030374 functional_description:"Enhancer of yellow 2 transcription factor homolog (AHRD V1 **** C1BWN3_ESOLU); contains Interpro domain(s) IPR018783 Transcription factor, enhancer of yellow 2 "; GO:0030374 NbS00039593g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|76573353|gb|ABA46781.1| (e_value=3e-51) unknown [Solanum tuberosum];; (*TAIR) AT3G02790.1 (e_value=5e-44) | Symbols: | zinc finger (C2H2 type) family protein | chr3:604926-605243 FORWARD LENGTH=105;; (*ITAG) Solyc04g056350.1.1 (e_value=9e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:53261172-53261489 transcript_region:SL2.40ch04:53261172..53261489+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZL2_ARALY)"; GO:0003700 NbS00048297g0001.1 protein AED:0.09 eAED:0.09 QI:205|1|1|1|0.75|0.77|9|589|429; (*GB) gi|363806710|ref|NP_001242524.1| (e_value=5e-176) uncharacterized protein LOC100820383 [Glycine max];; (*SWP) sp|Q8RWV3|CCL11_ARATH (e_value=1e-163) Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2;; (*TAIR) AT2G26430.1 (e_value=1e-164) | Symbols: RCY1, ATRCY1 | arginine-rich cyclin 1 | chr2:11243433-11245504 REVERSE LENGTH=416;; (*ITAG) Solyc01g098350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80653654-80657672 transcript_region:SL2.40ch01:80653654..80657672- go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase (AHRD V1 *-** B6SH69_MAIZE); contains Interpro domain(s) IPR017060 Cyclin L "; GO:0016538 NbS00051719g0004.1 protein AED:0.22 eAED:0.23 QI:21|0.5|0.4|0.8|1|1|5|0|308; (*GB) gi|4097585|gb|AAD09518.1| (e_value=1e-112) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|P54120|AIG1_ARATH (e_value=2e-61) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=1e-76) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc11g028010.1.1 (e_value=2e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00054106g0001.1 protein AED:0.15 eAED:0.16 QI:0|0.55|0.3|0.6|1|1|10|0|523; (*GB) gi|359480516|ref|XP_002265425.2| (e_value=3e-81) PREDICTED: uncharacterized protein LOC100241361 [Vitis vinifera];; (*TAIR) AT2G22720.3 (e_value=1e-27) | Symbols: | SPT2 chromatin protein | chr2:9658182-9660532 FORWARD LENGTH=569;; (*ITAG) Solyc03g043760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11279379-11283447 transcript_region:SL2.40ch03:11279379..11283447+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- Q53MP6_ORYSJ); contains Interpro domain(s) IPR013256 Chromatin SPT2 "; NbS00022903g0004.1 protein AED:0.39 eAED:0.39 QI:184|0.90|0.91|0.91|0.63|0.58|12|0|219; (*GB) gi|76573311|gb|ABA46760.1| (e_value=1e-137) vacuolar protein sorting-associated protein 26-like protein [Solanum tuberosum];; (*SWP) sp|Q9FJD0|VP26A_ARATH (e_value=6e-132) Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1;; (*TAIR) AT5G53530.1 (e_value=4e-133) | Symbols: VPS26A | vacuolar protein sorting 26A | chr5:21746275-21748156 REVERSE LENGTH=302;; (*ITAG) Solyc04g050240.2.1 (e_value=3e-141) genomic_reference:SL2.40ch04 gene_region:45455420-45471463 transcript_region:SL2.40ch04:45455420..45471463- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 26-like protein (AHRD V1 ***- Q3HRZ1_SOLTU); contains Interpro domain(s) IPR005377 Vacuolar protein sorting-associated protein 26 "; GO:0005515 NbS00027770g0012.1 protein AED:0.39 eAED:0.39 QI:0|0.75|0.6|1|1|1|5|289|196; (*GB) gi|224110108|ref|XP_002315418.1| (e_value=9e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04840.1 (e_value=2e-33) | Symbols: | bZIP protein | chr5:1406005-1407648 FORWARD LENGTH=307;; (*ITAG) Solyc11g006490.1.1 (e_value=1e-83) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1168446-1172236 transcript_region:SL2.40ch11:1168446..1172236+ functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LW03_ARALY)"; NbS00027770g0007.1 protein AED:0.13 eAED:0.13 QI:253|1|1|1|1|1|7|712|233; (*GB) gi|255555154|ref|XP_002518614.1| (e_value=2e-143) Charged multivesicular body protein, putative [Ricinus communis];; (*SWP) sp|Q54JK4|CHMP5_DICDI (e_value=2e-54) Charged multivesicular body protein 5 OS=Dictyostelium discoideum GN=chmp5 PE=3 SV=1;; (*TAIR) AT3G10640.1 (e_value=6e-138) | Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324905 REVERSE LENGTH=235;; (*ITAG) Solyc11g006500.1.1 (e_value=1e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1172855-1175999 transcript_region:SL2.40ch11:1172855..1175999- go_terms:GO:0016563,GO:0042802 functional_description:"Charged multivesicular body protein 5 (AHRD V1 **-- B6TYU1_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0016563,GO:0042802 NbS00027770g0011.1 protein AED:0.20 eAED:0.20 QI:0|1|0.33|1|1|1|3|0|328; (*GB) gi|359487025|ref|XP_002266714.2| (e_value=2e-159) PREDICTED: apoptosis-inducing factor homolog A-like [Vitis vinifera];; (*SWP) sp|Q54NS9|AIFA_DICDI (e_value=2e-37) Apoptosis-inducing factor homolog A OS=Dictyostelium discoideum GN=aifA PE=3 SV=1;; (*TAIR) AT3G44190.1 (e_value=3e-153) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367;; (*ITAG) Solyc11g006540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1191915-1194459 transcript_region:SL2.40ch11:1191915..1194459- go_terms:GO:0055114 functional_description:"FAD-dependent pyridine nucleotide-disulphide oxidoreductase (AHRD V1 **-- D3M425_9ACTO); contains Interpro domain(s) IPR001327 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region "; GO:0055114 NbS00031826g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|441; (*GB) gi|2570523|gb|AAB82146.1| (e_value=0.0) inorganic phosphate transporter [Solanum lycopersicum];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=0.0) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g066410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60426564-60428153 transcript_region:SL2.40ch09:60426564..60428153+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00045842g0003.1 protein AED:0.13 eAED:0.13 QI:341|0.84|0.84|1|0.96|0.96|26|489|1512; (*GB) gi|125535486|gb|EAY81974.1| (e_value=0.0) hypothetical protein OsI_37152 [Oryza sativa Indica Group];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=0.0) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc06g051310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31032238-31043527 transcript_region:SL2.40ch06:31032238..31043527+ go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00046055g0003.1 protein AED:0.63 eAED:0.74 QI:0|0.33|0|0.5|0.66|0.75|4|0|149; (*GB) gi|118481312|gb|ABK92599.1| (e_value=9e-64) unknown [Populus trichocarpa];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=3e-58) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=2e-59) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=3e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00030643g0006.1 protein AED:0.18 eAED:0.18 QI:77|1|0.5|1|1|1|2|45|73; (*GB) gi|297741465|emb|CBI32596.3| (e_value=8e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G39235.1 (e_value=2e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18268514-18269034 FORWARD LENGTH=86;; (*ITAG) Solyc01g109680.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:88334992-88335716 transcript_region:SL2.40ch01:88334992..88335716- functional_description:"Unknown Protein (AHRD V1)"; NbS00030643g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|4|0|332; (*GB) gi|224077840|ref|XP_002305431.1| (e_value=1e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN49|KCS4_ARATH (e_value=8e-110) 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1;; (*TAIR) AT1G19440.1 (e_value=6e-111) | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516;; (*ITAG) Solyc04g080450.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00060765g0006.1 protein AED:0.04 eAED:0.04 QI:123|1|1|1|0.57|0.87|8|165|491; (*GB) gi|350539513|ref|NP_001234675.1| (e_value=0.0) LAX2 protein [Solanum lycopersicum];; (*SWP) sp|Q9S836|LAX2_ARATH (e_value=0.0) Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G21050.1 (e_value=0.0) | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483;; (*ITAG) Solyc01g111310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89353214-89356755 transcript_region:SL2.40ch01:89353214..89356755- go_terms:GO:0015171 functional_description:"Transmembrane amino acid transporter protein (AHRD V1 **** A8NP23_BRUMA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00009957g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.88|0.83|0.88|1|1|18|0|596; (*GB) gi|544184|sp|Q06801.1|DPEP_SOLTU (e_value=0.0) RecName: Full=4-alpha-glucanotransferase, chloroplastic/amyloplastic; AltName: Full=Amylomaltase; AltName: Full=Disproportionating enzyme; Short=D-enzyme; Flags: Precursor;; (*SWP) sp|Q06801|DPEP_SOLTU (e_value=0.0) 4-alpha-glucanotransferase, chloroplastic/amyloplastic OS=Solanum tuberosum GN=DPEP PE=1 SV=1;; (*TAIR) AT5G64860.1 (e_value=0.0) | Symbols: DPE1 | disproportionating enzyme | chr5:25925373-25928788 REVERSE LENGTH=576;; (*ITAG) Solyc04g053120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50864174-50870628 transcript_region:SL2.40ch04:50864174..50870628- go_terms:GO:0005975 functional_description:"4-alpha-glucanotransferase (AHRD V1 ***- Q9LV91_ARATH); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0005975 NbS00020783g0005.1 protein AED:0.11 eAED:0.11 QI:686|1|1|1|1|1|3|228|370; (*GB) gi|225424405|ref|XP_002284898.1| (e_value=3e-122) PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990-like [Vitis vinifera];; (*SWP) sp|Q9LS10|MT810_ARATH (e_value=2e-75) Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1;; (*TAIR) AT1G68040.1 (e_value=4e-97) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:25502876-25505224 FORWARD LENGTH=363;; (*ITAG) Solyc01g005230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:181503-183049 transcript_region:SL2.40ch01:181503..183049+ go_terms:GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** A7XZE9_9MAGN); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00020783g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc10g049500.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41522014-41524568 transcript_region:SL2.40ch10:41522014..41524568+ go_terms:GO:0030795,GO:0019010 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** Q9AVR1_STEFL); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0030795,GO:0019010 NbS00028573g0010.1 protein AED:0.29 eAED:0.47 QI:0|0|0|1|0.33|0.25|4|0|105; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=9e-23) NADH dehydrogenase subunit [Medicago truncatula];; (*ITAG) ATMG01320.1 (e_value=4e-13) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00028573g0011.1 protein AED:0.90 eAED:1.00 QI:4|0|0|0.33|0.5|0.66|3|0|135 NbS00028573g0007.1 protein AED:0.14 eAED:0.14 QI:285|1|1|1|0.76|0.78|14|178|425; (*GB) gi|224060076|ref|XP_002300037.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27930.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10369593-10372318 REVERSE LENGTH=425;; (*ITAG) Solyc02g067740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32434528-32439982 transcript_region:SL2.40ch02:32434528..32439982- functional_description:"Genomic DNA chromosome 3 TAC clone K24A2 (AHRD V1 ***- Q9LIJ1_ARATH)"; NbS00003901g0003.1 protein AED:0.29 eAED:0.29 QI:34|0.25|0.4|0.4|0.75|0.8|5|0|154; (*ITAG) Solyc07g015840.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5543982-5546428 transcript_region:SL2.40ch07:5543982..5546428- functional_description:"Unknown Protein (AHRD V1)"; NbS00008555g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=1e-40) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*SWP) sp|Q9FLC6|ATL73_ARATH (e_value=1e-27) RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1;; (*TAIR) AT5G05280.1 (e_value=8e-29) | Symbols: | RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176;; (*ITAG) Solyc06g049030.2.1 (e_value=8e-55) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008555g0001.1 protein AED:0.24 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|225463766|ref|XP_002267930.1| (e_value=5e-96) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=5e-85) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT3G20015.1 (e_value=4e-86) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6978746-6980158 REVERSE LENGTH=470;; (*ITAG) Solyc04g008850.1.1 (e_value=2e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2469802-2471241 transcript_region:SL2.40ch04:2469802..2471241- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA97_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00008555g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|255544139|ref|XP_002513132.1| (e_value=5e-92) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=2e-86) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT3G20015.1 (e_value=2e-87) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6978746-6980158 REVERSE LENGTH=470;; (*ITAG) Solyc04g008850.1.1 (e_value=7e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2469802-2471241 transcript_region:SL2.40ch04:2469802..2471241- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA97_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00039529g0003.1 protein AED:0.13 eAED:0.13 QI:250|0.8|0.83|1|0.8|0.83|6|390|171; (*GB) gi|225458141|ref|XP_002280458.1| (e_value=2e-86) PREDICTED: protein C20orf11 homolog [Vitis vinifera];; (*SWP) sp|Q5ZKQ7|CT011_CHICK (e_value=2e-18) Protein C20orf11 homolog OS=Gallus gallus GN=RCJMB04_9k15 PE=2 SV=1;; (*TAIR) AT1G06060.1 (e_value=2e-69) | Symbols: | LisH and RanBPM domains containing protein | chr1:1833071-1834516 FORWARD LENGTH=213;; (*ITAG) Solyc04g080900.2.1 (e_value=1e-92) genomic_reference:SL2.40ch04 gene_region:62536299-62548561 transcript_region:SL2.40ch04:62536299..62548561+ go_terms:GO:0006508,GO:0005525,GO:0005622 functional_description:"GTPase obg (AHRD V1 *-*- D1C1Q0_SPHTD); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0006508,GO:0005525,GO:0005622 NbS00058177g0014.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|0.28|0.12|8|0|767; (*GB) gi|359472798|ref|XP_002274984.2| (e_value=2e-109) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=5e-54) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=4e-55) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g066380.1.1 (e_value=8e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00058177g0021.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|0|0.5|2|0|150; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=7e-24) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=1e-23) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*ITAG) Solyc03g113750.1.1 (e_value=6e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058177g0022.1 protein AED:0.13 eAED:0.23 QI:24|0|0|1|0|0|5|0|433; (*GB) gi|255540805|ref|XP_002511467.1| (e_value=9e-177) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=3e-167) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=1e-168) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010812g0004.1 protein AED:0.05 eAED:0.05 QI:124|1|1|1|1|1|3|275|261; (*GB) gi|296088854|emb|CBI38318.3| (e_value=6e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZVQ6|P2B10_ARATH (e_value=1e-72) F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1;; (*TAIR) AT2G02360.1 (e_value=1e-73) | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10 | chr2:619699-620736 REVERSE LENGTH=272;; (*ITAG) Solyc12g098190.1.1 (e_value=1e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64152328-64154070 transcript_region:SL2.40ch12:64152328..64154070- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009892g0005.1 protein AED:0.56 eAED:0.69 QI:0|0.5|0|0.66|1|0.33|3|0|251; (*GB) gi|224080311|ref|XP_002306092.1| (e_value=2e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=4e-44) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=3e-45) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043130.1.1 (e_value=8e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:34865935-34882372 transcript_region:SL2.40ch11:34865935..34882372- go_terms:GO:0048015 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 ***- D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0048015 NbS00010849g0010.1 protein AED:0.38 eAED:0.38 QI:0|1|0.81|1|1|1|11|74|409; (*GB) gi|350534444|ref|NP_001233885.1| (e_value=0.0) (Sodium/potassium)/proton exchanger 4 [Solanum lycopersicum];; (*SWP) sp|Q56XP4|NHX2_ARATH (e_value=0.0) Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2;; (*TAIR) AT3G05030.1 (e_value=0.0) | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger 2 | chr3:1393456-1396784 REVERSE LENGTH=546;; (*ITAG) Solyc01g098190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80542394-80548100 transcript_region:SL2.40ch01:80542394..80548100+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA2_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00010849g0009.1 protein AED:0.41 eAED:0.45 QI:378|0.33|0.42|1|0.16|0|7|0|203; (*GB) gi|350534444|ref|NP_001233885.1| (e_value=3e-58) (Sodium/potassium)/proton exchanger 4 [Solanum lycopersicum];; (*SWP) sp|Q68KI4|NHX1_ARATH (e_value=7e-53) Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2;; (*TAIR) AT5G27150.1 (e_value=5e-54) | Symbols: NHX1, ATNHX, AT-NHX1, ATNHX1 | Na+/H+ exchanger 1 | chr5:9554251-9557266 FORWARD LENGTH=538;; (*ITAG) Solyc01g098190.2.1 (e_value=2e-62) genomic_reference:SL2.40ch01 gene_region:80542394-80548100 transcript_region:SL2.40ch01:80542394..80548100+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA2_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00010849g0011.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0.83|1|7|0|461; (*GB) gi|297744835|emb|CBI38103.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54RF3|EI2BE_DICDI (e_value=5e-118) Translation initiation factor eIF-2B subunit epsilon OS=Dictyostelium discoideum GN=eif2b5 PE=3 SV=1;; (*TAIR) AT2G34970.1 (e_value=0.0) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00010135g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|120; (*GB) gi|224111540|ref|XP_002315894.1| (e_value=4e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-40) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G71050.1 (e_value=3e-49) | Symbols: HIPP20 | Heavy metal transport/detoxification superfamily protein | chr1:26803322-26803946 REVERSE LENGTH=152;; (*ITAG) Solyc04g007630.1.1 (e_value=9e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1308734-1309582 transcript_region:SL2.40ch04:1308734..1309582+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00010135g0003.1 protein AED:0.36 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|237; (*GB) gi|224101811|ref|XP_002312430.1| (e_value=4e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01300.1 (e_value=6e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:151221-151691 REVERSE LENGTH=156;; (*ITAG) Solyc05g008360.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2720439-2720873 transcript_region:SL2.40ch05:2720439..2720873+ functional_description:"Predicted by genscan and genefinder (AHRD V1 ***- Q9ZU37_ARATH)"; NbS00001157g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|70; (*GB) gi|255585562|ref|XP_002533470.1| (e_value=1e-20) protein with unknown function [Ricinus communis];; (*ITAG) Solyc07g049120.1.1 (e_value=3e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56667699-56669697 transcript_region:SL2.40ch07:56667699..56669697- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **** D7KGI2_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0008270 NbS00018759g0004.1 protein AED:0.12 eAED:0.12 QI:264|1|1|1|0.5|0.33|3|67|314; (*GB) gi|224099311|ref|XP_002311433.1| (e_value=4e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=4e-77) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=3e-78) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc05g009880.2.1 (e_value=9e-116) genomic_reference:SL2.40ch05 gene_region:4099737-4103336 transcript_region:SL2.40ch05:4099737..4103336+ go_terms:GO:0003700 functional_description:"Transcription factor bHLH30 (AHRD V1 **-* BH030_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00029256g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.90|0.83|0.91|0.72|0.75|12|326|417; (*GB) gi|225430502|ref|XP_002285549.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 60 [Vitis vinifera];; (*SWP) sp|Q9SZ53|P2C60_ARATH (e_value=0.0) Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1;; (*TAIR) AT4G31860.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:15406685-15408589 REVERSE LENGTH=357;; (*ITAG) Solyc08g006060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:807001-823843 transcript_region:SL2.40ch08:807001..823843- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- C9E7A0_9CILI); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00029256g0008.1 protein AED:0.27 eAED:0.27 QI:139|1|1|1|1|1|5|727|172; (*GB) gi|224121444|ref|XP_002330829.1| (e_value=2e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIX2|AIG2L_ARATH (e_value=2e-39) AIG2-like protein OS=Arabidopsis thaliana GN=At5g39720 PE=1 SV=1;; (*TAIR) AT2G24390.1 (e_value=2e-60) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr2:10373796-10374654 FORWARD LENGTH=152;; (*ITAG) Solyc08g006070.2.1 (e_value=2e-111) genomic_reference:SL2.40ch08 gene_region:825105-830426 transcript_region:SL2.40ch08:825105..830426+ functional_description:"AIG2-like protein (AHRD V1 ***- B4FVZ7_MAIZE); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like "; NbS00044091g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|0.75|0.66|0.5|4|191|452; (*GB) gi|356555686|ref|XP_003546161.1| (e_value=5e-156) PREDICTED: uncharacterized protein LOC100802656 [Glycine max];; (*TAIR) AT5G11420.1 (e_value=2e-113) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc03g120040.2.1 (e_value=4e-167) genomic_reference:SL2.40ch03 gene_region:62599155-62602084 transcript_region:SL2.40ch03:62599155..62602084+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00007666g0003.1 protein AED:0.23 eAED:0.23 QI:155|0.66|0.5|1|0.33|0.5|4|0|297; (*GB) gi|297746445|emb|CBI16501.3| (e_value=6e-80) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55280.1 (e_value=1e-59) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr1:20623099-20624533 REVERSE LENGTH=390;; (*ITAG) Solyc01g005930.2.1 (e_value=9e-146) genomic_reference:SL2.40ch01 gene_region:606558-610602 transcript_region:SL2.40ch01:606558..610602+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011219g0009.1 protein AED:0.40 eAED:0.40 QI:606|0|0.33|0.33|1|1|3|0|97 NbS00026557g0008.1 protein AED:0.01 eAED:0.01 QI:64|1|0.75|1|1|1|4|0|268; (*GB) gi|255553797|ref|XP_002517939.1| (e_value=1e-142) Beta-expansin 3 precursor, putative [Ricinus communis];; (*SWP) sp|Q9M0I2|EXPB3_ARATH (e_value=1e-132) Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2;; (*TAIR) AT4G28250.1 (e_value=1e-133) | Symbols: ATEXPB3, EXPB3, ATHEXP BETA 1.6 | expansin B3 | chr4:14000446-14001945 REVERSE LENGTH=264;; (*ITAG) Solyc07g054170.2.1 (e_value=6e-171) genomic_reference:SL2.40ch07 gene_region:59853346-59856602 transcript_region:SL2.40ch07:59853346..59856602+ go_terms:GO:0005576 functional_description:"Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00026557g0007.1 protein AED:0.03 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|431; (*GB) gi|255553799|ref|XP_002517940.1| (e_value=3e-69) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=2e-56) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=1e-57) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc07g054180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59859331-59862986 transcript_region:SL2.40ch07:59859331..59862986- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00034506g0003.1 protein AED:0.09 eAED:0.09 QI:328|0.9|0.81|1|0.9|0.81|11|0|580; (*GB) gi|225457955|ref|XP_002274931.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241980 [Vitis vinifera];; (*TAIR) AT1G30755.1 (e_value=2e-126) | Symbols: | Protein of unknown function (DUF668) | chr1:10905991-10908773 REVERSE LENGTH=615;; (*ITAG) Solyc04g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63055757-63062387 transcript_region:SL2.40ch04:63055757..63062387+ go_terms:GO:0016020 functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; GO:0016020 NbS00009584g0004.1 protein AED:0.31 eAED:0.54 QI:0|0|0|0.4|1|1|5|0|189 NbS00009584g0008.1 protein AED:0.00 eAED:0.00 QI:23|1|1|1|1|1|6|58|417; (*GB) gi|297735443|emb|CBI17883.3| (e_value=3e-156) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G21190.1 (e_value=2e-138) | Symbols: | O-fucosyltransferase family protein | chr3:7432579-7434543 REVERSE LENGTH=422;; (*ITAG) Solyc07g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3059386-3064846 transcript_region:SL2.40ch07:3059386..3064846- functional_description:"Growth regulator like protein (AHRD V1 **-- B6TX13_MAIZE); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00009584g0007.1 protein AED:0.01 eAED:0.01 QI:257|1|1|1|1|1|2|259|145; (*GB) gi|225445519|ref|XP_002285231.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100255957 [Vitis vinifera];; (*ITAG) Solyc07g008280.2.1 (e_value=9e-50) genomic_reference:SL2.40ch07 gene_region:3049990-3051076 transcript_region:SL2.40ch07:3049990..3051076- functional_description:"Unknown Protein (AHRD V1)"; NbS00009584g0010.1 protein AED:0.37 eAED:0.37 QI:26|0|0.5|0.5|1|1|2|342|104 NbS00017757g0033.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.57|1|0|0.14|7|132|261; (*GB) gi|356515971|ref|XP_003526670.1| (e_value=4e-34) PREDICTED: bidirectional sugar transporter SWEET1-like [Glycine max];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=4e-28) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=3e-29) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064630.2.1 (e_value=4e-48) genomic_reference:SL2.40ch04 gene_region:54919575-54923356 transcript_region:SL2.40ch04:54919575..54923356- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROME); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00017757g0005.1 protein AED:0.10 eAED:0.10 QI:269|1|1|1|0.2|0.16|6|282|248; (*GB) gi|356509332|ref|XP_003523404.1| (e_value=3e-122) PREDICTED: bidirectional sugar transporter SWEET1-like [Glycine max];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=4e-115) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=3e-116) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064620.2.1 (e_value=2e-156) genomic_reference:SL2.40ch04 gene_region:54912258-54914934 transcript_region:SL2.40ch04:54912258..54914934- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROPS); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00017757g0022.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|5|710|278; (*GB) gi|255570434|ref|XP_002526176.1| (e_value=6e-130) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|O49292|PPD4_ARATH (e_value=6e-117) PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2;; (*TAIR) AT1G77090.1 (e_value=4e-118) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:28960576-28961875 REVERSE LENGTH=260;; (*ITAG) Solyc04g064670.2.1 (e_value=2e-169) genomic_reference:SL2.40ch04 gene_region:54939986-54941975 transcript_region:SL2.40ch04:54939986..54941975- go_terms:GO:0019898 functional_description:"Thylakoid lumenal 19 kDa protein, chloroplastic (AHRD V1 *-*- TL19_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00017757g0021.1 protein AED:0.18 eAED:0.18 QI:0|1|0.62|1|0.42|0.75|8|0|493; (*GB) gi|224085069|ref|XP_002307477.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10SX7|GT31_ORYSJ (e_value=3e-15) Probable glucuronosyltransferase Os03g0107900 OS=Oryza sativa subsp. japonica GN=Os03g0107900 PE=2 SV=1;; (*TAIR) AT1G21480.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr1:7519116-7521426 REVERSE LENGTH=462;; (*ITAG) Solyc04g064680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54942400-54948658 transcript_region:SL2.40ch04:54942400..54948658- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7KK15_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00017757g0004.1 protein AED:0.16 eAED:0.19 QI:0|0.83|0.85|1|0|0.14|7|1500|321; (*GB) gi|359492781|ref|XP_002278504.2| (e_value=3e-137) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=1e-69) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=9e-71) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc04g064650.1.1 (e_value=1e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54935603-54937453 transcript_region:SL2.40ch04:54935603..54937453- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00017757g0019.1 protein AED:0.35 eAED:0.35 QI:71|1|0.5|1|0|0|2|0|89; (*GB) gi|255570430|ref|XP_002526174.1| (e_value=3e-33) Peroxidase 43 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=4e-32) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=5e-33) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc04g064690.2.1 (e_value=2e-43) genomic_reference:SL2.40ch04 gene_region:54949154-54952867 transcript_region:SL2.40ch04:54949154..54952867- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00017757g0027.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|180; (*GB) gi|7444442|pir||T02087 (e_value=4e-17) gag/pol polyprotein - maize retrotransposon Hopscotch;; (*ITAG) Solyc10g038180.1.1 (e_value=3e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:20317853-20319038 transcript_region:SL2.40ch10:20317853..20319038- functional_description:"Polyprotein (AHRD V1 **-- Q94KV0_ARATH)"; NbS00017757g0031.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|174; (*GB) gi|357487459|ref|XP_003614017.1| (e_value=2e-18) Pentatricopeptide repeat protein [Medicago truncatula];; (*SWP) sp|Q9FG16|PP367_ARATH (e_value=1e-14) Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1;; (*TAIR) AT5G06540.1 (e_value=9e-16) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1999181-2001049 REVERSE LENGTH=622;; (*ITAG) Solyc04g064650.1.1 (e_value=3e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54935603-54937453 transcript_region:SL2.40ch04:54935603..54937453- go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00017757g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|481; (*GB) gi|359492783|ref|XP_002278486.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Vitis vinifera];; (*SWP) sp|Q9LVF9|PP245_ARATH (e_value=3e-171) Pentatricopeptide repeat-containing protein At3g21470 OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1;; (*TAIR) AT3G21470.1 (e_value=2e-172) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:7563503-7565074 FORWARD LENGTH=523;; (*ITAG) Solyc04g064660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54938323-54939909 transcript_region:SL2.40ch04:54938323..54939909+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LHR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00035020g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|573; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*TAIR) AT1G75620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00035020g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|508; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=9e-11) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G75620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62754327-62756000 transcript_region:SL2.40ch04:62754327..62756000+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00035020g0008.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|2|0|631; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*TAIR) AT1G19900.1 (e_value=3e-161) | Symbols: | glyoxal oxidase-related protein | chr1:6907038-6908684 REVERSE LENGTH=548;; (*ITAG) Solyc04g081110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62746785-62748422 transcript_region:SL2.40ch04:62746785..62748422- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00023464g0004.1 protein AED:0.17 eAED:0.20 QI:0|0.33|0.14|0.85|0.66|0.71|7|0|494; (*GB) gi|359490814|ref|XP_002271858.2| (e_value=4e-142) PREDICTED: probable exonuclease mut-7 homolog [Vitis vinifera];; (*TAIR) AT5G24340.1 (e_value=6e-127) | Symbols: | 3'-5' exonuclease domain-containing protein | chr5:8297328-8300156 FORWARD LENGTH=505;; (*ITAG) Solyc03g082850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46244596-46250538 transcript_region:SL2.40ch03:46244596..46250538- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease family protein (AHRD V1 *--- Q23B12_TETTH); contains Interpro domain(s) IPR002782 Protein of unknown function DUF82 "; GO:0003676,GO:0005622 NbS00015870g0008.1 protein AED:0.23 eAED:0.29 QI:0|0|0|0.57|0.5|0.57|7|0|521; (*GB) gi|225460783|ref|XP_002274753.1| (e_value=5e-163) PREDICTED: uncharacterized protein LOC100262283 [Vitis vinifera];; (*TAIR) AT5G55530.2 (e_value=2e-128) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=4e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00015870g0010.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|0|0.33|3|0|233; (*GB) gi|224114439|ref|XP_002316760.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVI6|RLK90_ARATH (e_value=2e-27) Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1;; (*TAIR) AT2G36570.1 (e_value=5e-30) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15335583-15337725 FORWARD LENGTH=672;; (*ITAG) Solyc07g065240.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64305617-64307285 transcript_region:SL2.40ch07:64305617..64307285- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00011183g0004.1 protein AED:0.01 eAED:0.01 QI:509|1|1|1|1|1|3|197|356; (*GB) gi|268638403|gb|ACZ17543.1| (e_value=0.0) oxidoreductase [Capsicum annuum];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-74) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT5G05600.1 (e_value=5e-153) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc10g076660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58933875-58936555 transcript_region:SL2.40ch10:58933875..58936555+ go_terms:GO:0016491,GO:0055114 functional_description:"Anthocyanidin synthase (AHRD V1 **-- Q2QCX4_GOSHI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00014090g0007.1 protein AED:0.36 eAED:0.36 QI:0|0.25|0|0.4|0.5|0.8|5|0|253; (*GB) gi|224090773|ref|XP_002309075.1| (e_value=4e-24) predicted protein [Populus trichocarpa]; NbS00014090g0004.1 protein AED:0.24 eAED:0.24 QI:94|0.62|0.66|1|1|1|9|784|311; (*GB) gi|224063175|ref|XP_002301027.1| (e_value=7e-89) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02130.1 (e_value=3e-69) | Symbols: NDP1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:419747-421958 REVERSE LENGTH=420;; (*ITAG) Solyc09g011020.2.1 (e_value=1e-166) genomic_reference:SL2.40ch09 gene_region:4359339-4365508 transcript_region:SL2.40ch09:4359339..4365508- functional_description:"Kinesin light chain-like protein (AHRD V1 *-*- D8LTR1_ECTSI)"; NbS00001347g0003.1 protein AED:0.15 eAED:0.16 QI:0|0.64|0.61|1|0.82|0.83|18|0|693; (*GB) gi|255570428|ref|XP_002526173.1| (e_value=0.0) suppressor of ty, putative [Ricinus communis];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=0.0) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=0.0) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00038610g0006.1 protein AED:0.03 eAED:0.03 QI:43|1|1|1|0.88|0.84|19|411|2414; (*GB) gi|225459056|ref|XP_002285638.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254031 isoform 1 [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=0.0) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00028290g0007.1 protein AED:0.11 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|304; (*GB) gi|62733650|gb|AAX95766.1| (e_value=2e-93) Putative DNA binding protein, identical [Solanum lycopersicum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=9e-91) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G74840.2 (e_value=2e-54) | Symbols: | Homeodomain-like superfamily protein | chr1:28116201-28117317 REVERSE LENGTH=239;; (*ITAG) Solyc03g113620.2.1 (e_value=6e-111) genomic_reference:SL2.40ch03 gene_region:57743381-57744982 transcript_region:SL2.40ch03:57743381..57744982- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B2CZJ3_CAPAN); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00028290g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|355; (*GB) gi|17402469|emb|CAD13177.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P14641|TBA2_MAIZE (e_value=0.0) Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1;; (*TAIR) AT4G14960.2 (e_value=1e-178) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc04g077020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00001379g0005.1 protein AED:0.18 eAED:0.20 QI:0|0.6|0.66|0.83|1|1|6|0|305; (*GB) gi|225464033|ref|XP_002267203.1| (e_value=2e-152) PREDICTED: ABC transporter I family member 6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAF5|AB6I_ARATH (e_value=2e-141) ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1;; (*TAIR) AT3G10670.1 (e_value=2e-142) | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein 7 | chr3:3335325-3337304 REVERSE LENGTH=338;; (*ITAG) Solyc06g048540.2.1 (e_value=2e-169) genomic_reference:SL2.40ch06 gene_region:27702205-27706442 transcript_region:SL2.40ch06:27702205..27706442- go_terms:GO:0015623 functional_description:"FeS assembly ATPase SufC (AHRD V1 **** B5W7S4_SPIMA); contains Interpro domain(s) IPR010230 ATPase SufC, SUF system FeS cluster assembly "; GO:0015623 NbS00001379g0023.1 protein AED:0.21 eAED:0.25 QI:0|0.37|0.22|0.77|0.37|0.22|9|0|406; (*GB) gi|225448335|ref|XP_002266566.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera];; (*TAIR) AT3G54190.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:20061759-20063880 REVERSE LENGTH=467;; (*ITAG) Solyc06g048480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27611678-27620396 transcript_region:SL2.40ch06:27611678..27620396- functional_description:"Conserved Plasmodium protein (AHRD V1 *-*- Q8I666_PLAF7); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00001379g0017.1 protein AED:0.28 eAED:0.29 QI:0|0.71|0.75|1|0.42|0.5|8|634|258; (*GB) gi|356509108|ref|XP_003523294.1| (e_value=1e-101) PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Glycine max];; (*SWP) sp|Q96EX2|RNFT2_HUMAN (e_value=4e-27) RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2;; (*TAIR) AT5G01960.1 (e_value=1e-99) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc03g095450.2.1 (e_value=3e-108) genomic_reference:SL2.40ch03 gene_region:50014714-50023523 transcript_region:SL2.40ch03:50014714..50023523- go_terms:GO:0008270 functional_description:"RING finger protein 141 (AHRD V1 *--- RN141_CANFA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001379g0021.1 protein AED:0.43 eAED:0.43 QI:0|0.42|0.5|0.75|0.57|0.75|8|0|229; (*GB) gi|78191468|gb|ABB29955.1| (e_value=2e-146) hydroxyacylglutathione hydrolase cytoplasmic-like [Solanum tuberosum];; (*SWP) sp|O24496|GLO2C_ARATH (e_value=3e-121) Hydroxyacylglutathione hydrolase cytoplasmic OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2;; (*TAIR) AT3G10850.1 (e_value=2e-122) | Symbols: GLX2-2, GLY2 | Metallo-hydrolase/oxidoreductase superfamily protein | chr3:3397756-3399522 REVERSE LENGTH=258;; (*ITAG) Solyc06g048530.2.1 (e_value=7e-151) genomic_reference:SL2.40ch06 gene_region:27690862-27701677 transcript_region:SL2.40ch06:27690862..27701677- go_terms:GO:0004416 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** B6T2Y2_MAIZE); contains Interpro domain(s) IPR017782 Hydroxyacylglutathione hydrolase "; GO:0004416 NbS00001379g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|416; (*GB) gi|255559755|ref|XP_002520897.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q640T2|WIPI3_XENTR (e_value=5e-85) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G56440.1 (e_value=0.0) | Symbols: ATATG18D, ATG18D | homolog of yeast autophagy 18 (ATG18) D | chr3:20926874-20928797 FORWARD LENGTH=391;; (*ITAG) Solyc06g048510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27661455-27665948 transcript_region:SL2.40ch06:27661455..27665948+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00008693g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|356552358|ref|XP_003544535.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100775337 [Glycine max];; (*TAIR) AT2G26110.1 (e_value=8e-26) | Symbols: | Protein of unknown function (DUF761) | chr2:11120869-11121798 FORWARD LENGTH=309;; (*ITAG) Solyc08g065150.1.1 (e_value=5e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:50113091-50114122 transcript_region:SL2.40ch08:50113091..50114122- functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 *--- Q9FGR3_ARATH)"; NbS00029134g0010.1 protein AED:0.26 eAED:0.26 QI:129|0.77|0.78|1|0.66|0.68|19|0|441; (*GB) gi|225433343|ref|XP_002285592.1| (e_value=0.0) PREDICTED: uncharacterized protein all1601 [Vitis vinifera];; (*SWP) sp|Q8GS60|HCAR_ARATH (e_value=0.0) 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1;; (*TAIR) AT1G04620.1 (e_value=0.0) | Symbols: | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | chr1:1282869-1286492 REVERSE LENGTH=462;; (*ITAG) Solyc09g091100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65800960-65811144 transcript_region:SL2.40ch09:65800960..65811144- go_terms:GO:0050454 functional_description:"Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like (AHRD V1 **** Q118A1_TRIEI); contains Interpro domain(s) IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal "; GO:0050454 NbS00029134g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|429; (*GB) gi|260177088|gb|ACX33887.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|O23024|YUC3_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana GN=YUC3 PE=2 SV=1;; (*TAIR) AT1G04610.1 (e_value=0.0) | Symbols: YUC3 | YUCCA 3 | chr1:1279524-1281331 FORWARD LENGTH=437;; (*ITAG) Solyc09g091090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65795418-65797460 transcript_region:SL2.40ch09:65795418..65797460+ go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00026304g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.9|0.81|1|0.5|0.45|11|254|519; (*GB) gi|225449388|ref|XP_002282470.1| (e_value=0.0) PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera];; (*SWP) sp|Q9R0X5|RPGR_MOUSE (e_value=3e-16) X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=1;; (*TAIR) AT3G55580.1 (e_value=2e-156) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:20612766-20615730 FORWARD LENGTH=488;; (*ITAG) Solyc09g011160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4509244-4514595 transcript_region:SL2.40ch09:4509244..4514595+ go_terms:GO:0003682,GO:0008536 functional_description:"Regulator of chromosome condensation RCC1 (AHRD V1 *--- B8FLG8_DESAA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682,GO:0008536 NbS00042791g0006.1 protein AED:0.14 eAED:0.14 QI:289|0.84|0.78|1|0.84|0.85|14|0|675; (*GB) gi|225456649|ref|XP_002270994.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 1 [Vitis vinifera];; (*SWP) sp|C0LGF4|FEI1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1;; (*TAIR) AT5G62710.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25187438-25190325 FORWARD LENGTH=604;; (*ITAG) Solyc03g113450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57645268-57650030 transcript_region:SL2.40ch03:57645268..57650030+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00042791g0002.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc03g113460.1.1 (e_value=3e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57655307-57656107 transcript_region:SL2.40ch03:57655307..57656107+ go_terms:GO:0005507 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4Y6_ZEALU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0005507 NbS00047183g0002.1 protein AED:0.01 eAED:0.01 QI:252|0.66|0.75|1|0.66|0.75|4|354|205; (*GB) gi|225429027|ref|XP_002267686.1| (e_value=4e-36) PREDICTED: uncharacterized protein LOC100241214 [Vitis vinifera];; (*TAIR) AT4G33800.1 (e_value=3e-16) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16210404-16211307 REVERSE LENGTH=170;; (*ITAG) Solyc01g106910.2.1 (e_value=1e-61) genomic_reference:SL2.40ch01 gene_region:86381562-86382592 transcript_region:SL2.40ch01:86381562..86382592- functional_description:"Unknown Protein (AHRD V1)"; NbS00031786g0006.1 protein AED:0.06 eAED:0.06 QI:215|1|0.75|1|0|0.75|4|0|282; (*GB) gi|224125912|ref|XP_002319706.1| (e_value=4e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10M18|TRL12_ORYSJ (e_value=1e-88) Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1;; (*TAIR) AT1G08570.2 (e_value=2e-89) | Symbols: ACHT4 | atypical CYS HIS rich thioredoxin 4 | chr1:2713059-2714312 FORWARD LENGTH=244;; (*ITAG) Solyc10g080730.1.1 (e_value=1e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61264010-61265881 transcript_region:SL2.40ch10:61264010..61265881- go_terms:GO:0045454 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7KIT3_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00031786g0001.1 protein AED:0.19 eAED:0.23 QI:0|0.75|0.4|1|1|1|5|0|988; (*GB) gi|18146966|dbj|BAB82502.1| (e_value=0.0) cig3 [Nicotiana tabacum];; (*SWP) sp|Q86US8|EST1A_HUMAN (e_value=3e-28) Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2;; (*TAIR) AT5G19400.2 (e_value=0.0) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059;; (*ITAG) Solyc10g080740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61271723-61276562 transcript_region:SL2.40ch10:61271723..61276562+ functional_description:"Smg-7 homolog nonsense mediated mRNA decay factor (C. elegans) (Fragment) (AHRD V1 *--- B1ALB4_HUMAN); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00033580g0014.1 protein AED:0.07 eAED:0.08 QI:0|1|0.75|1|0.66|0.75|4|0|430; (*GB) gi|224146480|ref|XP_002326021.1| (e_value=4e-161) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12060.1 (e_value=3e-90) | Symbols: TBL1 | Plant protein of unknown function (DUF828) | chr3:3843142-3845150 FORWARD LENGTH=556;; (*ITAG) Solyc07g053330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59117025-59118922 transcript_region:SL2.40ch07:59117025..59118922- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00033580g0015.1 protein AED:0.13 eAED:0.13 QI:136|1|1|1|0.5|0.4|5|311|367; (*GB) gi|255568301|ref|XP_002525125.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42570.1 (e_value=2e-171) | Symbols: TBL39 | TRICHOME BIREFRINGENCE-LIKE 39 | chr2:17717498-17719921 REVERSE LENGTH=367;; (*ITAG) Solyc07g053350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59129770-59135121 transcript_region:SL2.40ch07:59129770..59135121+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00033580g0002.1 protein AED:0.19 eAED:0.19 QI:381|0.85|0.87|1|0.85|0.75|8|361|401; (*GB) gi|225446569|ref|XP_002279986.1| (e_value=6e-42) PREDICTED: uncharacterized protein LOC100250516 [Vitis vinifera];; (*TAIR) AT2G31130.1 (e_value=6e-19) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc07g053320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59112881-59116171 transcript_region:SL2.40ch07:59112881..59116171+ functional_description:"Fiber protein Fb32 (AHRD V1 *-*- Q6UA04_GOSBA)"; NbS00033580g0013.1 protein AED:0.21 eAED:0.21 QI:125|1|0.87|1|0.28|0.5|8|0|316; (*GB) gi|359485436|ref|XP_002280009.2| (e_value=2e-124) PREDICTED: uncharacterized protein LOC100245387 [Vitis vinifera];; (*SWP) sp|Q9NVZ3|NECP2_HUMAN (e_value=8e-39) Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1;; (*TAIR) AT3G58600.1 (e_value=7e-109) | Symbols: | Adaptin ear-binding coat-associated protein 1 NECAP-1 | chr3:21668746-21670999 REVERSE LENGTH=302;; (*ITAG) Solyc07g053310.2.1 (e_value=1e-160) genomic_reference:SL2.40ch07 gene_region:59102795-59108445 transcript_region:SL2.40ch07:59102795..59108445+ go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 1 (AHRD V1 **** B4FRD1_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00033580g0005.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|75 NbS00043008g0006.1 protein AED:0.15 eAED:0.16 QI:460|0|0.11|0.77|1|1|9|0|1699; (*GB) gi|113205156|gb|AAX95757.2| (e_value=0.0) BAH domain-containing protein, putative [Solanum lycopersicum];; (*TAIR) AT3G48050.2 (e_value=0.0) | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613;; (*ITAG) Solyc03g114060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58154643-58161458 transcript_region:SL2.40ch03:58154643..58161458+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00029116g0007.1 protein AED:0.05 eAED:0.05 QI:262|0.75|0.8|1|0.5|0.4|5|253|266; (*GB) gi|387600862|gb|AFJ92922.1| (e_value=5e-109) Tau1 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=1e-63) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.3 (e_value=5e-65) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261;; (*ITAG) Solyc07g045460.2.1 (e_value=4e-113) genomic_reference:SL2.40ch07 gene_region:55921590-55925559 transcript_region:SL2.40ch07:55921590..55925559+ go_terms:GO:0019901 functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 **** C1BGS7_ONCMY); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00008912g0009.1 protein AED:0.31 eAED:0.31 QI:67|1|1|1|1|1|7|407|187; (*GB) gi|225444903|ref|XP_002281869.1| (e_value=4e-98) PREDICTED: translation machinery-associated protein 22 [Vitis vinifera];; (*SWP) sp|O42929|DENR_SCHPO (e_value=3e-35) Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=2 SV=1;; (*TAIR) AT5G11900.1 (e_value=1e-94) | Symbols: | Translation initiation factor SUI1 family protein | chr5:3834154-3836023 FORWARD LENGTH=198;; (*ITAG) Solyc07g039450.2.1 (e_value=4e-112) genomic_reference:SL2.40ch07 gene_region:44808186-44817691 transcript_region:SL2.40ch07:44808186..44817691+ go_terms:GO:0005515,GO:0003723 functional_description:"Density-regulated protein (AHRD V1 ***- B6SQI8_MAIZE); contains Interpro domain(s) IPR005873 Density-regulated protein DRP1 "; GO:0005515,GO:0003723 NbS00016832g0010.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.33|1|0.5|0.33|3|0|902; (*GB) gi|255544686|ref|XP_002513404.1| (e_value=0.0) eukaryotic translation elongation factor, putative [Ricinus communis];; (*SWP) sp|O23755|EF2_BETVU (e_value=0.0) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT1G56070.1 (e_value=0.0) | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843;; (*ITAG) Solyc08g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49546793-49552256 transcript_region:SL2.40ch08:49546793..49552256- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00016832g0003.1 protein AED:0.12 eAED:0.14 QI:359|0.5|0.66|1|0.5|0.33|3|264|378; (*ITAG) Solyc11g044510.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:35859363-35860448 transcript_region:SL2.40ch11:35859363..35860448+ functional_description:"Unknown Protein (AHRD V1)"; NbS00052803g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|416; (*GB) gi|224113637|ref|XP_002316529.1| (e_value=3e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAA6|PPR34_ARATH (e_value=1e-131) Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1;; (*TAIR) AT1G11710.1 (e_value=9e-133) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3948886-3950859 FORWARD LENGTH=657;; (*ITAG) Solyc03g118280.1.1 (e_value=2e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00052803g0004.1 protein AED:0.02 eAED:0.13 QI:15|0|0.5|1|0|0.5|2|62|65; (*GB) gi|225007946|gb|ACN78665.1| (e_value=4e-28) endo-beta-mannanase [Malus x domestica];; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=1e-26) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1;; (*TAIR) AT2G20680.1 (e_value=1e-27) | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily protein | chr2:8921024-8923066 FORWARD LENGTH=433;; (*ITAG) Solyc10g008300.2.1 (e_value=4e-39) genomic_reference:SL2.40ch10 gene_region:2446485-2451132 transcript_region:SL2.40ch10:2446485..2451132- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00026986g0002.1 protein AED:0.17 eAED:0.18 QI:409|0|0.5|1|0|0|2|0|77; (*GB) gi|359473092|ref|XP_002275820.2| (e_value=8e-26) PREDICTED: zinc transporter 1-like [Vitis vinifera];; (*SWP) sp|O23039|ZIP5_ARATH (e_value=2e-23) Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=2e-24) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc02g081600.2.1 (e_value=7e-35) genomic_reference:SL2.40ch02 gene_region:40070162-40072548 transcript_region:SL2.40ch02:40070162..40072548+ go_terms:GO:0000007 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000007 NbS00019676g0005.1 protein AED:0.01 eAED:0.01 QI:101|1|0.5|1|0|0.5|2|57|44 NbS00019676g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|0.5|2|172|127; (*GB) gi|359474777|ref|XP_002267000.2| (e_value=3e-19) PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis vinifera];; (*SWP) sp|Q9FT73|RQL2_ARATH (e_value=7e-16) ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 PE=1 SV=1;; (*TAIR) AT1G31360.1 (e_value=5e-17) | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705;; (*ITAG) Solyc08g074600.2.1 (e_value=3e-41) genomic_reference:SL2.40ch08 gene_region:55860216-55864872 transcript_region:SL2.40ch08:55860216..55864872- go_terms:GO:0005622 functional_description:"ATP-dependent DNA helicase RecQ family protein expressed (AHRD V1 ***- Q2QZ07_ORYSJ); contains Interpro domain(s) IPR002121 Helicase and RNase D C-terminal, HRDC "; GO:0005622 NbS00019676g0007.1 protein AED:0.48 eAED:0.53 QI:4|0.5|0.4|1|0.5|0.4|5|0|97; (*GB) gi|357484579|ref|XP_003612577.1| (e_value=7e-46) ATP-dependent DNA helicase RecQ family protein expressed [Medicago truncatula];; (*SWP) sp|Q9FT73|RQL2_ARATH (e_value=5e-41) ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana GN=RECQL2 PE=1 SV=1;; (*TAIR) AT1G31360.2 (e_value=3e-42) | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:11233174-11237412 FORWARD LENGTH=580;; (*ITAG) Solyc08g074610.1.1 (e_value=4e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55867799-55896405 transcript_region:SL2.40ch08:55867799..55896405- go_terms:GO:0017116 functional_description:"ATP-dependent DNA helicase Q1 (AHRD V1 **** B0XD44_CULQU); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0017116 NbS00052481g0004.1 protein AED:0.59 eAED:0.80 QI:0|0|0|1|0.33|0.75|4|0|148; (*GB) gi|297738054|emb|CBI27255.3| (e_value=3e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54HW1|PSD10_DICDI (e_value=4e-17) 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=3e-40) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc05g012590.2.1 (e_value=1e-58) genomic_reference:SL2.40ch05 gene_region:5805482-5808679 transcript_region:SL2.40ch05:5805482..5808679+ go_terms:GO:0008134 functional_description:"Ankyrin repeat and KH domain-containing protein 1 (AHRD V1 **-- ANKH1_HUMAN); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00004263g0007.1 protein AED:0.23 eAED:0.24 QI:174|0.66|0.57|1|0.5|0.28|7|378|381; (*GB) gi|302143952|emb|CBI23057.3| (e_value=7e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q505J9|ATAD1_RAT (e_value=6e-88) ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=1 SV=1;; (*TAIR) AT4G27680.1 (e_value=2e-177) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13821263-13823083 FORWARD LENGTH=398;; (*ITAG) Solyc08g083020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62784688-62787084 transcript_region:SL2.40ch08:62784688..62787084- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 **-- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00004263g0010.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|194; (*GB) gi|225426619|ref|XP_002280809.1| (e_value=6e-85) PREDICTED: uncharacterized protein LOC100244479 [Vitis vinifera];; (*TAIR) AT4G24090.1 (e_value=2e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr4:12512742-12514467 FORWARD LENGTH=308;; (*ITAG) Solyc08g083010.2.1 (e_value=2e-108) genomic_reference:SL2.40ch08 gene_region:62781441-62784381 transcript_region:SL2.40ch08:62781441..62784381+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q00TF3_OSTTA)"; NbS00006164g0109.1 protein AED:0.04 eAED:0.04 QI:38|1|0.5|1|0|0|2|0|101 NbS00006164g0102.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|97 NbS00006164g0103.1 protein AED:0.40 eAED:0.58 QI:0|0|0.33|1|0|0.33|3|549|141 NbS00027506g0003.1 protein AED:0.06 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|278; (*GB) gi|224121690|ref|XP_002318648.1| (e_value=5e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUD9|SRO2_ARATH (e_value=8e-54) Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1;; (*TAIR) AT1G23550.1 (e_value=6e-55) | Symbols: SRO2 | similar to RCD one 2 | chr1:8350912-8352232 FORWARD LENGTH=323;; (*ITAG) Solyc03g114360.2.1 (e_value=3e-118) genomic_reference:SL2.40ch03 gene_region:58422049-58424255 transcript_region:SL2.40ch03:58422049..58424255- go_terms:GO:0016042,GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0016042,GO:0003950 NbS00027506g0012.1 protein AED:0.22 eAED:0.25 QI:0|0.77|0.7|1|0.77|0.7|10|774|606; (*GB) gi|356513127|ref|XP_003525265.1| (e_value=0.0) PREDICTED: protease Do-like 9-like [Glycine max];; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=0.0) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=0.0) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g026400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:16569293-16581104 transcript_region:SL2.40ch12:16569293..16581104+ go_terms:GO:0006508,GO:0003824 functional_description:"Serine protease (AHRD V1 ***- D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0006508,GO:0003824 NbS00049906g0005.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0.2|0.8|1|1|5|0|279; (*GB) gi|358248219|ref|NP_001239841.1| (e_value=2e-33) uncharacterized protein LOC100820520 [Glycine max];; (*TAIR) AT5G60800.1 (e_value=6e-29) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc06g074930.1.1 (e_value=5e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42830852-42832129 transcript_region:SL2.40ch06:42830852..42832129+ go_terms:GO:0005507 functional_description:"Metal ion binding protein (AHRD V1 **** B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00047530g0003.1 protein AED:0.02 eAED:0.02 QI:22|1|0.5|1|1|1|2|0|352; (*GB) gi|255538270|ref|XP_002510200.1| (e_value=8e-134) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C635|HSFB4_ARATH (e_value=1e-96) Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1;; (*TAIR) AT1G46264.1 (e_value=8e-98) | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcription factor B4 | chr1:17224904-17226183 FORWARD LENGTH=348;; (*ITAG) Solyc04g078770.2.1 (e_value=8e-155) genomic_reference:SL2.40ch04 gene_region:61036586-61037903 transcript_region:SL2.40ch04:61036586..61037903+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00012532g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0.72|1|1|1|11|0|717; (*GB) gi|359495780|ref|XP_003635088.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853414 [Vitis vinifera];; (*TAIR) AT5G66600.2 (e_value=3e-180) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26577954 REVERSE LENGTH=594;; (*ITAG) Solyc02g089980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46247120-46250736 transcript_region:SL2.40ch02:46247120..46250736+ functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00012532g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|225468755|ref|XP_002274634.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100255767 [Vitis vinifera];; (*TAIR) AT2G23690.1 (e_value=3e-51) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00012532g0010.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|0|0|2|0|179; (*GB) gi|2500717|sp|Q41495.1|ST14_SOLTU (e_value=2e-45) RecName: Full=STS14 protein; Flags: Precursor;; (*SWP) sp|Q41495|ST14_SOLTU (e_value=6e-47) STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1;; (*TAIR) AT5G66590.1 (e_value=1e-45) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr5:26574255-26574812 FORWARD LENGTH=185;; (*ITAG) Solyc02g065470.1.1 (e_value=2e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31198798-31199340 transcript_region:SL2.40ch02:31198798..31199340+ go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 ***- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00007115g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|199; (*GB) gi|296083225|emb|CBI22861.3| (e_value=9e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23474|PER40_ARATH (e_value=1e-60) Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2;; (*TAIR) AT4G16270.1 (e_value=9e-62) | Symbols: | Peroxidase superfamily protein | chr4:9205038-9206483 FORWARD LENGTH=362;; (*ITAG) Solyc01g058520.2.1 (e_value=4e-94) genomic_reference:SL2.40ch01 gene_region:59706522-59708166 transcript_region:SL2.40ch01:59706522..59708166- go_terms:GO:0055114 functional_description:"Peroxidase 40 (AHRD V1 ***- D7M9X0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00007115g0012.1 protein AED:0.12 eAED:0.15 QI:0|0.5|0.4|1|0.25|0.4|5|0|375; (*GB) gi|388518977|gb|AFK47550.1| (e_value=1e-157) unknown [Lotus japonicus];; (*SWP) sp|Q9LJP1|GRIP4_ARATH (e_value=3e-76) GDSL esterase/lipase 4 OS=Arabidopsis thaliana GN=GLIP4 PE=2 SV=2;; (*TAIR) AT3G14225.1 (e_value=2e-77) | Symbols: GLIP4 | GDSL-motif lipase 4 | chr3:4734616-4735993 REVERSE LENGTH=377;; (*ITAG) Solyc06g064960.2.1 (e_value=1e-83) genomic_reference:SL2.40ch06 gene_region:36897918-36899600 transcript_region:SL2.40ch06:36897918..36899600+ go_terms:GO:0016298 functional_description:"GDSL esterase/lipase 5 (AHRD V1 **** GLIP5_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298 NbS00007115g0015.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|167; (*GB) gi|158905747|gb|ABW82529.1| (e_value=2e-47) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|O23474|PER40_ARATH (e_value=1e-42) Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2;; (*TAIR) AT4G16270.1 (e_value=2e-43) | Symbols: | Peroxidase superfamily protein | chr4:9205038-9206483 FORWARD LENGTH=362;; (*ITAG) Solyc01g058520.2.1 (e_value=5e-59) genomic_reference:SL2.40ch01 gene_region:59706522-59708166 transcript_region:SL2.40ch01:59706522..59708166- go_terms:GO:0055114 functional_description:"Peroxidase 40 (AHRD V1 ***- D7M9X0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00052763g0001.1 protein AED:0.19 eAED:0.41 QI:0|0|0|1|0|0|4|0|189; (*GB) gi|147794997|emb|CAN60859.1| (e_value=4e-31) hypothetical protein VITISV_032629 [Vitis vinifera];; (*SWP) sp|O64640|CXE8_ARATH (e_value=3e-26) Probable carboxylesterase 8 OS=Arabidopsis thaliana GN=CXE8 PE=2 SV=1;; (*TAIR) AT2G45600.1 (e_value=2e-27) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18789799-18790788 FORWARD LENGTH=329;; (*ITAG) Solyc01g094010.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:77343777-77345945 transcript_region:SL2.40ch01:77343777..77345945- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPW6_9ROSA); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00012138g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.75|1|0.33|0.25|4|0|179; (*GB) gi|356536041|ref|XP_003536549.1| (e_value=6e-25) PREDICTED: uncharacterized protein LOC100788423 [Glycine max];; (*TAIR) AT4G21745.1 (e_value=7e-16) | Symbols: | PAK-box/P21-Rho-binding family protein | chr4:11549340-11550415 FORWARD LENGTH=156;; (*ITAG) Solyc02g080230.2.1 (e_value=3e-45) genomic_reference:SL2.40ch02 gene_region:39084532-39087315 transcript_region:SL2.40ch02:39084532..39087315+ functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00012138g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|297840375|ref|XP_002888069.1| (e_value=2e-97) OST3/OST6 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G61790.1 (e_value=6e-100) | Symbols: | Oligosaccharyltransferase complex/magnesium transporter family protein | chr1:22814390-22815430 FORWARD LENGTH=346;; (*ITAG) Solyc03g031790.1.1 (e_value=1e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8556970-8557992 transcript_region:SL2.40ch03:8556970..8557992- go_terms:GO:0015157 functional_description:"Magnesium transporter protein 1 (AHRD V1 **-* C1BXI2_ESOLU); contains Interpro domain(s) IPR006844 OST3/OST6 "; GO:0015157 NbS00012138g0009.1 protein AED:0.15 eAED:0.50 QI:117|1|0.66|1|0.5|0.66|3|0|410; (*ITAG) Solyc03g031780.2.1 (e_value=3e-22) genomic_reference:SL2.40ch03 gene_region:8552272-8554151 transcript_region:SL2.40ch03:8552272..8554151- functional_description:"Unknown Protein (AHRD V1)"; NbS00015490g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.2|0|0.66|0.4|0.5|6|0|437; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=2e-142) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=2e-108) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=1e-109) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=5e-138) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00015490g0006.1 protein AED:0.32 eAED:0.32 QI:270|1|0.85|1|0.66|0.57|7|0|125; (*GB) gi|147779267|emb|CAN70088.1| (e_value=2e-82) hypothetical protein VITISV_038170 [Vitis vinifera];; (*SWP) sp|Q10KF0|PSA2_ORYSJ (e_value=3e-81) Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1;; (*TAIR) AT1G16470.2 (e_value=2e-82) | Symbols: PAB1 | proteasome subunit PAB1 | chr1:5623122-5625439 FORWARD LENGTH=235;; (*ITAG) Solyc10g008010.2.1 (e_value=2e-85) genomic_reference:SL2.40ch10 gene_region:2177130-2182889 transcript_region:SL2.40ch10:2177130..2182889+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38M52_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00026483g0007.1 protein AED:0.19 eAED:0.24 QI:333|0.57|0.72|0.95|0.47|0.63|22|0|838; (*GB) gi|296087917|emb|CBI35200.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=1e-124) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT1G08730.1 (e_value=0.0) | Symbols: XIC, ATXIC | Myosin family protein with Dil domain | chr1:2779963-2788325 FORWARD LENGTH=1538;; (*ITAG) Solyc11g006220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:959156-972148 transcript_region:SL2.40ch11:959156..972148- go_terms:GO:0016459 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0016459 NbS00004856g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.87|1|0.57|0.75|8|0|313; (*GB) gi|225464515|ref|XP_002270104.1| (e_value=6e-152) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=2e-144) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23420.2 (e_value=3e-135) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12226288-12228562 FORWARD LENGTH=316;; (*ITAG) Solyc03g025410.2.1 (e_value=1e-173) genomic_reference:SL2.40ch03 gene_region:7208399-7213989 transcript_region:SL2.40ch03:7208399..7213989- go_terms:GO:0046983 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 ***- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00004856g0007.1 protein AED:0.35 eAED:0.42 QI:0|0.5|0.4|1|0.5|0.4|5|78|115; (*GB) gi|255545238|ref|XP_002513680.1| (e_value=3e-31) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=1e-31) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23430.2 (e_value=2e-21) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12229171-12231493 FORWARD LENGTH=322;; (*ITAG) Solyc03g025410.2.1 (e_value=6e-40) genomic_reference:SL2.40ch03 gene_region:7208399-7213989 transcript_region:SL2.40ch03:7208399..7213989- go_terms:GO:0046983 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 ***- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00041803g0005.1 protein AED:0.43 eAED:0.43 QI:31|1|0.66|1|1|1|3|0|100; (*GB) gi|388495914|gb|AFK36023.1| (e_value=6e-60) unknown [Lotus japonicus];; (*SWP) sp|Q9FLP6|SUMO2_ARATH (e_value=3e-57) Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=2e-58) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc07g064880.2.1 (e_value=2e-62) genomic_reference:SL2.40ch07 gene_region:64080741-64083209 transcript_region:SL2.40ch07:64080741..64083209- go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier (AHRD V1 ***- A6BMG7_COPCI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00041803g0007.1 protein AED:0.52 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|59 NbS00024477g0005.1 protein AED:0.11 eAED:0.11 QI:228|1|1|1|0.76|0.66|18|243|489; (*GB) gi|350536875|ref|NP_001234013.1| (e_value=0.0) monodehydroascorbate reductase [Solanum lycopersicum];; (*SWP) sp|P92947|MDARP_ARATH (e_value=0.0) Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3;; (*TAIR) AT1G63940.2 (e_value=0.0) | Symbols: MDAR6 | monodehydroascorbate reductase 6 | chr1:23730095-23733534 FORWARD LENGTH=493;; (*ITAG) Solyc08g081530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61722769-61729291 transcript_region:SL2.40ch08:61722769..61729291+ go_terms:GO:0005524 functional_description:"Reductase (AHRD V1 ***- B5HVX9_9ACTO); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0005524 NbS00024477g0006.1 protein AED:0.08 eAED:0.08 QI:108|1|1|1|0.75|0.6|5|370|485; (*GB) gi|41059857|gb|AAR99393.1| (e_value=0.0) ACC synthase ACS3b [Nicotiana attenuata];; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1;; (*TAIR) AT4G11280.1 (e_value=0.0) | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 | chr4:6864168-6865922 FORWARD LENGTH=495;; (*ITAG) Solyc08g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61733933-61736466 transcript_region:SL2.40ch08:61733933..61736466+ go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96580_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00029253g0006.1 protein AED:0.03 eAED:0.09 QI:0|0.25|0.2|1|0.5|0.6|5|0|1021; (*GB) gi|225455635|ref|XP_002271423.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241288 [Vitis vinifera];; (*TAIR) AT5G51800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:21048317-21051906 FORWARD LENGTH=972;; (*ITAG) Solyc03g006900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1440454-1443745 transcript_region:SL2.40ch03:1440454..1443745+ functional_description:"Crinkler (CRN) family protein (AHRD V1 *-*- D0NJ10_PHYIN); contains Interpro domain(s) IPR011009 Protein kinase-like "; NbS00005548g0003.1 protein AED:0.16 eAED:0.16 QI:380|1|1|1|1|1|5|359|369; (*GB) gi|225454113|ref|XP_002269224.1| (e_value=0.0) PREDICTED: bifunctional protein FolD [Vitis vinifera];; (*SWP) sp|A1BF67|FOLD_CHLPD (e_value=8e-95) Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2;; (*TAIR) AT4G00620.1 (e_value=0.0) | Symbols: | Amino acid dehydrogenase family protein | chr4:259265-260788 REVERSE LENGTH=360;; (*ITAG) Solyc01g094280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77576917-77580139 transcript_region:SL2.40ch01:77576917..77580139- go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00054005g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|359475334|ref|XP_003631660.1| (e_value=2e-34) PREDICTED: dnaJ homolog subfamily C member 2-like [Vitis vinifera];; (*TAIR) AT4G39250.1 (e_value=6e-33) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc12g089190.1.1 (e_value=4e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62746778-62748217 transcript_region:SL2.40ch12:62746778..62748217- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00036779g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0.25|1|0.33|0.25|4|0|259; (*GB) gi|225447324|ref|XP_002280216.1| (e_value=2e-109) PREDICTED: peroxidase 27 [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=8e-88) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=6e-89) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc05g046000.2.1 (e_value=9e-119) genomic_reference:SL2.40ch05 gene_region:57183616-57185801 transcript_region:SL2.40ch05:57183616..57185801+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00003148g0002.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|284; (*GB) gi|225428751|ref|XP_002285042.1| (e_value=5e-89) PREDICTED: probable carboxylesterase 7-like [Vitis vinifera];; (*SWP) sp|Q9SMM9|CXE13_ARATH (e_value=2e-76) Probable carboxylesterase 13 OS=Arabidopsis thaliana GN=CXE13 PE=2 SV=1;; (*TAIR) AT3G48700.1 (e_value=1e-77) | Symbols: ATCXE13, CXE13 | carboxyesterase 13 | chr3:18038825-18039814 REVERSE LENGTH=329;; (*ITAG) Solyc04g079190.2.1 (e_value=2e-79) genomic_reference:SL2.40ch04 gene_region:61337920-61339311 transcript_region:SL2.40ch04:61337920..61339311+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00014303g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|34|204; (*ITAG) Solyc04g015800.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:6102917-6103987 transcript_region:SL2.40ch04:6102917..6103987- functional_description:"Unknown Protein (AHRD V1)"; NbS00019486g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|140 NbS00019486g0010.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|160; (*GB) gi|225444283|ref|XP_002262807.1| (e_value=5e-63) PREDICTED: uncharacterized protein LOC100265893 [Vitis vinifera];; (*TAIR) AT5G42570.1 (e_value=5e-54) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc02g032930.2.1 (e_value=6e-77) genomic_reference:SL2.40ch02 gene_region:20179350-20185331 transcript_region:SL2.40ch02:20179350..20185331+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00027883g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|1|1|4|0|242; (*GB) gi|225445160|ref|XP_002280688.1| (e_value=4e-119) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 26 [Vitis vinifera];; (*SWP) sp|Q9SVV2|XTH26_ARATH (e_value=2e-106) Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1;; (*TAIR) AT4G28850.1 (e_value=2e-107) | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase 26 | chr4:14244336-14245781 FORWARD LENGTH=292;; (*ITAG) Solyc12g007260.1.1 (e_value=1e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1680869-1682934 transcript_region:SL2.40ch12:1680869..1682934+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00029073g0006.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|210; (*GB) gi|359483528|ref|XP_002266016.2| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100256671 [Vitis vinifera];; (*TAIR) AT4G18650.1 (e_value=9e-30) | Symbols: | transcription factor-related | chr4:10264043-10265422 REVERSE LENGTH=232;; (*ITAG) Solyc02g073580.1.1 (e_value=4e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36326016-36326675 transcript_region:SL2.40ch02:36326016..36326675+ go_terms:GO:0005515 functional_description:"BZIP transcription factor (AHRD V1 **-- Q8W5R8_ORYSA)"; GO:0005515 NbS00029073g0001.1 protein AED:0.16 eAED:0.16 QI:185|0.75|0.6|1|1|1|5|0|297; (*GB) gi|356508829|ref|XP_003523156.1| (e_value=6e-58) PREDICTED: uncharacterized protein LOC100787932 [Glycine max];; (*TAIR) AT5G50740.1 (e_value=3e-51) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637847 REVERSE LENGTH=283;; (*ITAG) Solyc06g072700.2.1 (e_value=1e-60) genomic_reference:SL2.40ch06 gene_region:41222496-41224829 transcript_region:SL2.40ch06:41222496..41224829- go_terms:GO:0046914 functional_description:"Metal ion binding protein (AHRD V1 *--* B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0046914 NbS00021955g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|62; (*GB) gi|316927704|gb|ADU58605.1| (e_value=4e-17) xyloglucan-specific endoglucanase inhibitor 4 [Solanum tuberosum];; (*ITAG) Solyc01g079960.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:71620732-71622320 transcript_region:SL2.40ch01:71620732..71622320+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ3_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00021955g0011.1 protein AED:0.06 eAED:0.06 QI:104|0.8|0.83|1|0.4|0.33|6|89|279; (*GB) gi|255552267|ref|XP_002517178.1| (e_value=4e-92) Aquaporin NIP1.1, putative [Ricinus communis];; (*SWP) sp|Q8LAI1|NIP71_ARATH (e_value=1e-69) Probable aquaporin NIP7-1 OS=Arabidopsis thaliana GN=NIP7-1 PE=2 SV=2;; (*TAIR) AT3G06100.1 (e_value=8e-71) | Symbols: NLM6, NLM8, NIP7;1 | NOD26-like intrinsic protein 7;1 | chr3:1841388-1842934 REVERSE LENGTH=275;; (*ITAG) Solyc01g079890.2.1 (e_value=4e-149) genomic_reference:SL2.40ch01 gene_region:71581683-71583698 transcript_region:SL2.40ch01:71581683..71583698- go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0016020 NbS00021955g0012.1 protein AED:0.10 eAED:0.26 QI:0|0|0|1|0|0.2|5|0|366; (*GB) gi|316927704|gb|ADU58605.1| (e_value=2e-104) xyloglucan-specific endoglucanase inhibitor 4 [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=3e-31) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=1e-70) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079980.2.1 (e_value=6e-107) genomic_reference:SL2.40ch01 gene_region:71631382-71632836 transcript_region:SL2.40ch01:71631382..71632836- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ3_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00021955g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|0|0|2|0|105; (*GB) gi|224139046|ref|XP_002326754.1| (e_value=6e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31940.1 (e_value=1e-25) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=2e-42) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00038788g0001.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|225448503|ref|XP_002272821.1| (e_value=3e-67) PREDICTED: LOB domain-containing protein 21 [Vitis vinifera];; (*SWP) sp|Q9SRL8|LBD21_ARATH (e_value=7e-61) LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1;; (*TAIR) AT3G11090.1 (e_value=5e-62) | Symbols: LBD21 | LOB domain-containing protein 21 | chr3:3475036-3475533 FORWARD LENGTH=165;; (*ITAG) Solyc03g095940.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51109385-51109897 transcript_region:SL2.40ch03:51109385..51109897+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 ***- D7L9U4_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00038788g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0.5|1|0|0.5|2|373|269; (*GB) gi|224098720|ref|XP_002311242.1| (e_value=4e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05550.2 (e_value=1e-61) | Symbols: | sequence-specific DNA binding transcription factors | chr5:1639529-1640550 REVERSE LENGTH=249;; (*ITAG) Solyc06g051120.2.1 (e_value=6e-133) genomic_reference:SL2.40ch06 gene_region:30709379-30717882 transcript_region:SL2.40ch06:30709379..30717882- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **-* D7LYY3_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00008037g0015.1 protein AED:0.01 eAED:0.05 QI:121|0.5|0.33|1|0.5|0.33|3|0|332; (*GB) gi|147819069|emb|CAN63103.1| (e_value=6e-66) hypothetical protein VITISV_029578 [Vitis vinifera];; (*TAIR) AT2G37820.1 (e_value=7e-65) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:15847541-15848413 FORWARD LENGTH=290;; (*ITAG) Solyc09g011270.2.1 (e_value=4e-97) genomic_reference:SL2.40ch09 gene_region:4603003-4605126 transcript_region:SL2.40ch09:4603003..4605126+ go_terms:GO:0006614 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0006614 NbS00008037g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|186; (*ITAG) Solyc09g011280.1.1 (e_value=3e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4613409-4613945 transcript_region:SL2.40ch09:4613409..4613945+ go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00008037g0018.1 protein AED:0.11 eAED:0.11 QI:121|0.66|0.5|1|0.66|0.75|4|0|534; (*GB) gi|225440516|ref|XP_002272737.1| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At3g53960 [Vitis vinifera];; (*SWP) sp|P0CI03|PTR28_ARATH (e_value=0.0) Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1;; (*TAIR) AT2G37900.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63613952-63616015 transcript_region:SL2.40ch10:63613952..63616015- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00008037g0012.1 protein AED:0.15 eAED:0.15 QI:137|1|0.92|1|0.33|0.38|13|69|282; (*GB) gi|6647900|sp|P93394.1|UPP_TOBAC (e_value=2e-157) RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; AltName: Full=UMP pyrophosphorylase;; (*SWP) sp|P93394|UPP_TOBAC (e_value=7e-159) Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1;; (*TAIR) AT3G53900.2 (e_value=1e-131) | Symbols: UPP, PYRR | uracil phosphoribosyltransferase | chr3:19956914-19959006 REVERSE LENGTH=296;; (*ITAG) Solyc09g011300.2.1 (e_value=1e-160) genomic_reference:SL2.40ch09 gene_region:4641043-4645919 transcript_region:SL2.40ch09:4641043..4645919+ go_terms:GO:0005515,GO:0004845 functional_description:"Uracil phosphoribosyltransferase (AHRD V1 **** B6U5U2_MAIZE); contains Interpro domain(s) IPR005765 Uracil phosphoribosyl transferase "; GO:0005515,GO:0004845 NbS00008037g0013.1 protein AED:0.20 eAED:0.21 QI:100|1|0.5|1|1|1|2|0|256; (*GB) gi|147819069|emb|CAN63103.1| (e_value=2e-70) hypothetical protein VITISV_029578 [Vitis vinifera];; (*TAIR) AT2G37820.1 (e_value=8e-68) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:15847541-15848413 FORWARD LENGTH=290;; (*ITAG) Solyc09g011270.2.1 (e_value=8e-105) genomic_reference:SL2.40ch09 gene_region:4603003-4605126 transcript_region:SL2.40ch09:4603003..4605126+ go_terms:GO:0006614 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0006614 NbS00012628g0008.1 protein AED:0.26 eAED:0.29 QI:0|0.90|0.82|0.94|0.84|0.82|34|0|1243; (*GB) gi|302143856|emb|CBI22717.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P29144|TPP2_HUMAN (e_value=0.0) Tripeptidyl-peptidase 2 OS=Homo sapiens GN=TPP2 PE=1 SV=4;; (*TAIR) AT4G20850.1 (e_value=0.0) | Symbols: TPP2 | tripeptidyl peptidase ii | chr4:11160935-11169889 REVERSE LENGTH=1380;; (*ITAG) Solyc03g025610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7389499-7395832 transcript_region:SL2.40ch03:7389499..7395832+ go_terms:GO:0006508 functional_description:"Subtilisin-like serine protease (AHRD V1 **-- D8I1W0_AMYMU); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508 NbC26111187g0004.1 protein AED:0.11 eAED:0.12 QI:14|0.5|0.66|1|0.5|0.66|3|0|307; (*GB) gi|224094238|ref|XP_002310103.1| (e_value=4e-106) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=3e-75) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=2e-76) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc02g069960.2.1 (e_value=7e-97) genomic_reference:SL2.40ch02 gene_region:34315619-34318868 transcript_region:SL2.40ch02:34315619..34318868- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HH05_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00002566g0005.1 protein AED:0.17 eAED:0.19 QI:0|0.75|0.55|1|0.12|0.11|9|40|330; (*GB) gi|225454248|ref|XP_002274925.1| (e_value=1e-76) PREDICTED: protein PAIR1-like [Vitis vinifera];; (*SWP) sp|Q75RY2|PAIR1_ORYSJ (e_value=2e-19) Protein PAIR1 OS=Oryza sativa subsp. japonica GN=PAIR1 PE=2 SV=1;; (*TAIR) AT1G01690.1 (e_value=5e-36) | Symbols: ATPRD3, PRD3 | putative recombination initiation defects 3 | chr1:249242-252221 FORWARD LENGTH=449;; (*ITAG) Solyc01g094650.2.1 (e_value=3e-134) genomic_reference:SL2.40ch01 gene_region:77854038-77859401 transcript_region:SL2.40ch01:77854038..77859401- functional_description:"Protein PAIR1 (AHRD V1 *-*- PAIR1_ORYSJ)"; NbS00044041g0005.1 protein AED:0.01 eAED:0.01 QI:237|1|0.5|1|0|0|2|0|42 NbS00044041g0004.1 protein AED:0.22 eAED:0.25 QI:193|0|0.6|0.8|0.75|0.8|5|752|228; (*GB) gi|255626663|gb|ACU13676.1| (e_value=2e-69) unknown [Glycine max];; (*SWP) sp|Q9XIK3|ISCAP_ARATH (e_value=3e-66) Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2;; (*TAIR) AT1G10500.1 (e_value=2e-67) | Symbols: ATCPISCA, CPISCA | chloroplast-localized ISCA-like protein | chr1:3460160-3461340 REVERSE LENGTH=180;; (*ITAG) Solyc05g051700.2.1 (e_value=2e-84) genomic_reference:SL2.40ch05 gene_region:61252478-61256747 transcript_region:SL2.40ch05:61252478..61256747- go_terms:GO:0005515,GO:0005198 functional_description:"Iron--sulfur cluster insertion protein erpA (AHRD V1 ***- ERPA_STRMK); contains Interpro domain(s) IPR016092 FeS cluster insertion "; GO:0005515,GO:0005198 NbS00048147g0001.1 protein AED:0.29 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc10g080380.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60982103-60982318 transcript_region:SL2.40ch10:60982103..60982318- functional_description:"Unknown Protein (AHRD V1)"; NbS00008529g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.5|1|0.8|0.66|6|0|537; (*GB) gi|197690586|emb|CAQ58420.1| (e_value=0.0) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q03411|SUT_SPIOL (e_value=0.0) Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT1G22710.1 (e_value=0.0) | Symbols: SUC2, SUT1, ATSUC2 | sucrose-proton symporter 2 | chr1:8030911-8032970 REVERSE LENGTH=512;; (*ITAG) Solyc11g017010.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7760827-7764617 transcript_region:SL2.40ch11:7760827..7764617+ go_terms:GO:0005887,GO:0016021 functional_description:"Sucrose transporter (AHRD V1 ***- A8E0N3_TOBAC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0005887,GO:0016021 NbS00025249g0007.1 protein AED:0.15 eAED:0.15 QI:429|1|1|1|1|1|2|411|84; (*ITAG) Solyc06g061230.2.1 (e_value=6e-40) genomic_reference:SL2.40ch06 gene_region:35620304-35620987 transcript_region:SL2.40ch06:35620304..35620987+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009632 Putative metallocarboxypeptidase inhibitor "; NbS00025249g0005.1 protein AED:0.48 eAED:0.56 QI:0|0|0|0.75|1|1|4|0|115 NbS00025249g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|225427207|ref|XP_002278180.1| (e_value=6e-24) PREDICTED: uncharacterized protein LOC100248947 [Vitis vinifera];; (*TAIR) AT2G35230.1 (e_value=8e-23) | Symbols: IKU1 | VQ motif-containing protein | chr2:14842871-14844079 FORWARD LENGTH=402;; (*ITAG) Solyc06g061190.1.1 (e_value=9e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35583227-35584333 transcript_region:SL2.40ch06:35583227..35584333- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7KHM1_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00043180g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|4|944|486; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=0.0) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00013837g0007.1 protein AED:0.01 eAED:0.01 QI:56|1|1|1|1|1|2|297|160; (*GB) gi|270313168|gb|ACZ73651.1| (e_value=1e-23) glycine-rich protein precursor [Nicotiana tabacum];; (*ITAG) Solyc09g082810.2.1 (e_value=2e-19) genomic_reference:SL2.40ch09 gene_region:63876458-63877767 transcript_region:SL2.40ch09:63876458..63877767+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010800 Glycine rich "; NbS00013509g0005.1 protein AED:0.32 eAED:0.32 QI:150|1|1|1|0.75|1|5|366|213; (*GB) gi|388493818|gb|AFK34975.1| (e_value=1e-76) unknown [Lotus japonicus];; (*TAIR) AT5G53070.1 (e_value=2e-76) | Symbols: | Ribosomal protein L9/RNase H1 | chr5:21518837-21520167 FORWARD LENGTH=221;; (*ITAG) Solyc05g032880.2.1 (e_value=3e-140) genomic_reference:SL2.40ch05 gene_region:45539872-45546212 transcript_region:SL2.40ch05:45539872..45546212+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L9 (AHRD V1 ***- D6SS62_9DELT); contains Interpro domain(s) IPR000244 Ribosomal protein L9 "; GO:0005840 NbS00015158g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0|0|3|0|151; (*GB) gi|296085406|emb|CBI29138.3| (e_value=4e-24) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1K1|ORG2_ARATH (e_value=5e-21) Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1;; (*TAIR) AT3G56970.1 (e_value=4e-22) | Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253;; (*ITAG) Solyc10g079680.1.1 (e_value=3e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60501972-60503972 transcript_region:SL2.40ch10:60501972..60503972+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00003168g0114.1 protein AED:0.07 eAED:0.08 QI:0|0.44|0.1|1|0.55|0.5|10|0|2040 NbS00003168g0111.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|0.5|0.66|3|0|165 NbS00013195g0003.1 protein AED:0.06 eAED:0.06 QI:141|1|0.5|1|0|0|2|0|309; (*GB) gi|255541978|ref|XP_002512053.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G69160.1 (e_value=8e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits to 172 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink). | chr1:26000315-26001280 FORWARD LENGTH=321;; (*ITAG) Solyc05g012030.1.1 (e_value=8e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5246485-5247408 transcript_region:SL2.40ch05:5246485..5247408+ functional_description:"At1g69160/F4N2_9 (AHRD V1 ***- Q93Z37_ARATH)"; NbS00015823g0002.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|135 NbS00015823g0007.1 protein AED:0.00 eAED:0.00 QI:97|1|1|1|0|0|2|174|60; (*GB) gi|357491717|ref|XP_003616146.1| (e_value=4e-30) hypothetical protein MTR_5g076600 [Medicago truncatula]; NbS00015823g0006.1 protein AED:0.43 eAED:0.44 QI:17|0.8|0.66|1|0.8|0.83|6|0|183; (*GB) gi|266879|sp|P29687.1|RAB5_TOBAC (e_value=2e-117) RecName: Full=Ras-related protein Rab5;; (*SWP) sp|P29687|RAB5_TOBAC (e_value=6e-119) Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1;; (*TAIR) AT5G45130.1 (e_value=4e-97) | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200;; (*ITAG) Solyc02g036450.2.1 (e_value=6e-116) genomic_reference:SL2.40ch02 gene_region:21496239-21501862 transcript_region:SL2.40ch02:21496239..21501862- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00020423g0002.1 protein AED:0.19 eAED:0.19 QI:618|1|1|1|0.23|0.28|14|242|500; (*GB) gi|297737628|emb|CBI26829.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUU3|CPS3B_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2;; (*TAIR) AT2G01730.1 (e_value=0.0) | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and polyadenylation specificity factor 73 kDa subunit-II | chr2:320597-323845 FORWARD LENGTH=613;; (*ITAG) Solyc04g008030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1682464-1697247 transcript_region:SL2.40ch04:1682464..1697247- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B0WXD2_CULQU); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00003983g0004.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.25|1|1|4|0|115 NbS00003983g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|69 NbS00003983g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|69 NbS00008235g0004.1 protein AED:0.25 eAED:0.25 QI:200|0.95|0.82|1|0.90|0.82|23|470|1288; (*GB) gi|356567769|ref|XP_003552088.1| (e_value=0.0) PREDICTED: geminivirus Rep-interacting motor protein-like [Glycine max];; (*SWP) sp|Q9LX99|GRIMP_ARATH (e_value=0.0) Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1;; (*TAIR) AT5G65460.1 (e_value=0.0) | Symbols: KCA2, KAC2 | kinesin like protein for actin based chloroplast movement 2 | chr5:26161831-26169001 REVERSE LENGTH=1264;; (*ITAG) Solyc11g010560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00022729g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|0.5|4|0|202; (*GB) gi|357461379|ref|XP_003600971.1| (e_value=1e-95) Multiple inositol polyphosphate phosphatase [Medicago truncatula];; (*SWP) sp|Q54ND5|MINP1_DICDI (e_value=6e-19) Multiple inositol polyphosphate phosphatase 1 OS=Dictyostelium discoideum GN=mipp1 PE=1 SV=1;; (*TAIR) AT1G09870.1 (e_value=7e-86) | Symbols: | histidine acid phosphatase family protein | chr1:3205817-3208444 FORWARD LENGTH=487;; (*ITAG) Solyc06g050990.2.1 (e_value=1e-115) genomic_reference:SL2.40ch06 gene_region:30572702-30578772 transcript_region:SL2.40ch06:30572702..30578772+ go_terms:GO:0003993 functional_description:"Multiple inositol polyphosphate phosphatase (AHRD V1 ***- Q54ND5_DICDI); contains Interpro domain(s) IPR016274 Histidine acid phosphatase, eukaryotic "; GO:0003993 NbS00031132g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.4|1|1|5|0|146; (*GB) gi|121755934|gb|ABM64814.1| (e_value=2e-23) autophagy protein beclin1 [Chromolaena odorata];; (*SWP) sp|Q9M367|BECN1_ARATH (e_value=2e-20) Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2;; (*TAIR) AT3G61710.3 (e_value=4e-22) | Symbols: BECLIN1, AtBECLIN1 | AUTOPHAGY 6 | chr3:22840211-22841815 REVERSE LENGTH=318;; (*ITAG) Solyc05g050390.2.1 (e_value=1e-24) genomic_reference:SL2.40ch05 gene_region:59651299-59658483 transcript_region:SL2.40ch05:59651299..59658483- go_terms:GO:0005515 functional_description:"Beclin 1 protein (AHRD V1 ***- Q4A184_SOLTU); contains Interpro domain(s) IPR007243 Autophagy-related protein 6 "; GO:0005515 NbS00031132g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|350536959|ref|NP_001234273.1| (e_value=3e-32) JJH-R-like protein [Solanum lycopersicum];; (*SWP) sp|Q6L3Z0|R1B13_SOLDE (e_value=2e-20) Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1;; (*ITAG) Solyc05g007610.2.1 (e_value=1e-54) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00031132g0007.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0|0|6|0|1411; (*GB) gi|142942427|gb|ABO93001.1| (e_value=0.0) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=0.0) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-50) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00003389g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|255553735|ref|XP_002517908.1| (e_value=2e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03600.1 (e_value=6e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1603820-1604308 REVERSE LENGTH=162;; (*ITAG) Solyc07g053930.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59669873-59670388 transcript_region:SL2.40ch07:59669873..59670388- functional_description:"Unknown Protein (AHRD V1)"; NbS00004389g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|1|1|3|0|384; (*GB) gi|357447681|ref|XP_003594116.1| (e_value=3e-122) hypothetical protein MTR_2g021580 [Medicago truncatula];; (*TAIR) AT3G19430.1 (e_value=4e-113) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc01g107720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86928473-86929971 transcript_region:SL2.40ch01:86928473..86929971+ functional_description:"Root cap protein 3 (Fragment) (AHRD V1 ***- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00004389g0009.1 protein AED:0.26 eAED:0.31 QI:0|0.62|0.66|0.88|0.62|0.55|9|228|461; (*GB) gi|297802428|ref|XP_002869098.1| (e_value=1e-125) cyclase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q2S2F5|KYNB_SALRD (e_value=3e-18) Kynurenine formamidase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=kynB PE=3 SV=1;; (*TAIR) AT4G35220.1 (e_value=5e-128) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc01g107700.2.1 (e_value=5e-139) genomic_reference:SL2.40ch01 gene_region:86915524-86922302 transcript_region:SL2.40ch01:86915524..86922302+ go_terms:GO:0004061 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061 NbS00014004g0007.1 protein AED:0.00 eAED:0.00 QI:367|1|1|1|1|1|2|204|398; (*GB) gi|224079914|ref|XP_002305971.1| (e_value=4e-130) predicted protein [Populus trichocarpa];; (*TAIR) AT1G61600.1 (e_value=4e-100) | Symbols: | Protein of unknown function (DUF1262) | chr1:22729816-22731182 FORWARD LENGTH=421;; (*ITAG) Solyc02g089650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45984452-45986300 transcript_region:SL2.40ch02:45984452..45986300+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00014004g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|331; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=5e-45) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=4e-47) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=3e-114) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00036596g0013.1 protein AED:0.10 eAED:0.19 QI:0|0.55|0.5|1|0.55|0.4|10|0|790; (*GB) gi|225447456|ref|XP_002266728.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=0.0) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00036596g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|458; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=0.0) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-140) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=7e-78) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc01g095760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78718439-78719988 transcript_region:SL2.40ch01:78718439..78719988+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00034077g0007.1 protein AED:0.15 eAED:0.15 QI:40|0.8|0.83|1|0.8|0.66|6|252|297; (*GB) gi|350536139|ref|NP_001234487.1| (e_value=2e-148) DNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=2e-145) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*TAIR) AT3G19130.1 (e_value=1e-109) | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435;; (*ITAG) Solyc10g050860.1.1 (e_value=3e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46447848-46455490 transcript_region:SL2.40ch10:46447848..46455490- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00034077g0011.1 protein AED:0.19 eAED:0.19 QI:209|0.87|0.82|1|0.75|0.70|17|573|636; (*GB) gi|225458519|ref|XP_002284254.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267853 [Vitis vinifera];; (*SWP) sp|P34422|DPF6_CAEEL (e_value=4e-17) Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=2 SV=2;; (*TAIR) AT5G36210.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14248202-14253272 REVERSE LENGTH=730;; (*ITAG) Solyc10g050840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46393442-46400716 transcript_region:SL2.40ch10:46393442..46400716+ go_terms:GO:0008233 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 **** B7K7L2_CYAP7); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0008233 NbS00034077g0012.1 protein AED:0.37 eAED:0.42 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|285; (*GB) gi|225428721|ref|XP_002284992.1| (e_value=5e-59) PREDICTED: sodium channel modifier 1 [Vitis vinifera]; NbS00040609g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.6|1|0.75|0.8|5|0|597; (*GB) gi|356525782|ref|XP_003531502.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100806376 [Glycine max];; (*TAIR) AT5G45030.2 (e_value=0.0) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607;; (*ITAG) Solyc07g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65098815-65104106 transcript_region:SL2.40ch07:65098815..65104106+ go_terms:GO:0003824 functional_description:"Peptidase trypsin-like serine and cysteine proteases (Fragment) (AHRD V1 ***- A2Q138_MEDTR); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00059437g0004.1 protein AED:0.02 eAED:0.02 QI:172|0.5|0.8|1|0.75|0.6|5|717|114; (*GB) gi|226507705|ref|NP_001148940.1| (e_value=4e-52) G10-like protein [Zea mays];; (*SWP) sp|Q94DE2|BD31A_ORYSJ (e_value=4e-52) Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica GN=Os01g0857700 PE=2 SV=1;; (*TAIR) AT4G21110.1 (e_value=4e-53) | Symbols: | G10 family protein | chr4:11267673-11268774 FORWARD LENGTH=145;; (*ITAG) Solyc09g009300.2.1 (e_value=1e-53) genomic_reference:SL2.40ch09 gene_region:2673382-2677553 transcript_region:SL2.40ch09:2673382..2677553- go_terms:GO:0001965 functional_description:"BUD31 homolog (AHRD V1 **-- C1C3X0_RANCA); contains Interpro domain(s) IPR001748 G10 protein "; GO:0001965 NbS00048541g0013.1 protein AED:0.21 eAED:0.21 QI:232|0.75|0.6|1|1|1|5|0|226; (*GB) gi|356516953|ref|XP_003527155.1| (e_value=5e-57) PREDICTED: LOW QUALITY PROTEIN: bifunctional phosphatase IMPL2, chloroplastic-like [Glycine max];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=2e-49) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=3e-50) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g109930.2.1 (e_value=2e-83) genomic_reference:SL2.40ch01 gene_region:88522523-88527340 transcript_region:SL2.40ch01:88522523..88527340+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7MGB6_ARALY); contains Interpro domain(s) IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase "; GO:0008934 NbS00048541g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.9|0.90|1|0.7|0.72|11|1297|395; (*GB) gi|24745880|dbj|BAC23035.1| (e_value=0.0) 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum];; (*SWP) sp|Q9MAK9|PS10B_ARATH (e_value=0.0) 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1;; (*TAIR) AT1G45000.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399;; (*ITAG) Solyc01g109940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00048541g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|20149046|gb|AAM12778.1| (e_value=6e-46) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=5e-35) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=1e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110800.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:89110185-89110682 transcript_region:SL2.40ch01:89110185..89110682- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00048541g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=1e-35) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=9e-29) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18030.1 (e_value=5e-31) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5968527-5968793 FORWARD LENGTH=88;; (*ITAG) Solyc01g110920.2.1 (e_value=6e-43) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00026525g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|1|0.75|0.8|5|0|270; (*GB) gi|296088524|emb|CBI37515.3| (e_value=9e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|O70157|TOP3A_MOUSE (e_value=4e-36) DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1;; (*TAIR) AT5G63920.1 (e_value=3e-73) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926;; (*ITAG) Solyc05g014750.2.1 (e_value=2e-168) genomic_reference:SL2.40ch05 gene_region:8888207-8893710 transcript_region:SL2.40ch05:8888207..8893710- go_terms:GO:0003917,GO:0005515 functional_description:"DNA topoisomerase (AHRD V1 *-** B9H4K8_POPTR); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0003917,GO:0005515 NbS00003766g0008.1 protein AED:0.06 eAED:0.09 QI:0|0.5|0|1|0|0|3|0|443; (*GB) gi|359481520|ref|XP_002275477.2| (e_value=1e-135) PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=4e-84) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT5G03150.1 (e_value=3e-85) | Symbols: JKD | C2H2-like zinc finger protein | chr5:745849-748678 FORWARD LENGTH=503;; (*ITAG) Solyc09g007550.2.1 (e_value=3e-176) genomic_reference:SL2.40ch09 gene_region:1151049-1153414 transcript_region:SL2.40ch09:1151049..1153414+ go_terms:GO:0003700,GO:0042803 functional_description:"Zinc finger family protein (AHRD V1 *--- D7M7Z8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0042803 NbS00026046g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|147794997|emb|CAN60859.1| (e_value=3e-147) hypothetical protein VITISV_032629 [Vitis vinifera];; (*SWP) sp|O64640|CXE8_ARATH (e_value=9e-124) Probable carboxylesterase 8 OS=Arabidopsis thaliana GN=CXE8 PE=2 SV=1;; (*TAIR) AT2G45600.1 (e_value=7e-125) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18789799-18790788 FORWARD LENGTH=329;; (*ITAG) Solyc01g094010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77343777-77345945 transcript_region:SL2.40ch01:77343777..77345945- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPW6_9ROSA); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00026046g0019.1 protein AED:0.28 eAED:0.28 QI:275|0.8|0.83|1|0.6|0.83|6|334|761; (*GB) gi|317106636|dbj|BAJ53142.1| (e_value=0.0) JHL05D22.13 [Jatropha curcas];; (*SWP) sp|Q9UT49|CID13_SCHPO (e_value=8e-46) Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid13 PE=1 SV=1;; (*TAIR) AT2G45620.1 (e_value=0.0) | Symbols: | Nucleotidyltransferase family protein | chr2:18792943-18795750 FORWARD LENGTH=764;; (*ITAG) Solyc01g094000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77331399-77342103 transcript_region:SL2.40ch01:77331399..77342103- go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase (AHRD V1 *--- B6K2B5_SCHJY); contains Interpro domain(s) IPR002058 PAP/25A-associated "; GO:0016779 NbS00026046g0003.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|147782452|emb|CAN77385.1| (e_value=4e-48) hypothetical protein VITISV_006351 [Vitis vinifera];; (*TAIR) AT2G45630.1 (e_value=2e-44) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18796560 FORWARD LENGTH=186;; (*ITAG) Solyc01g093990.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00026046g0020.1 protein AED:0.47 eAED:0.50 QI:0|0|0|1|0.5|0.33|3|0|149; (*GB) gi|359489392|ref|XP_003633919.1| (e_value=2e-61) PREDICTED: glyoxylate reductase isoform 1 [Vitis vinifera];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=1e-29) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G12550.1 (e_value=3e-49) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:4274649-4275831 FORWARD LENGTH=323;; (*ITAG) Solyc01g093990.2.1 (e_value=3e-76) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00026046g0018.1 protein AED:0.56 eAED:1.00 QI:0|0|0|1|1|1|2|0|172 NbS00044874g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.83|1|0.72|0.83|12|0|597; (*GB) gi|356540237|ref|XP_003538596.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-77) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G26370.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:9656886-9659741 FORWARD LENGTH=557;; (*ITAG) Solyc05g013730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7030827-7039619 transcript_region:SL2.40ch05:7030827..7039619- functional_description:"Auxin-independent growth protein (Fragment) (AHRD V1 *--- Q676V9_HYAOR); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00023526g0019.1 protein AED:0.22 eAED:0.22 QI:168|0.72|0.66|1|0.63|0.5|12|0|1174; (*GB) gi|359478537|ref|XP_002278840.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243375 [Vitis vinifera];; (*SWP) sp|Q22516|CHD3_CAEEL (e_value=2e-11) Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2;; (*TAIR) AT5G58610.1 (e_value=6e-137) | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065;; (*ITAG) Solyc09g031580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:21995732-22004663 transcript_region:SL2.40ch09:21995732..22004663+ go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--* Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00023526g0020.1 protein AED:0.22 eAED:0.22 QI:0|1|0.6|1|1|1|5|0|371; (*GB) gi|225434550|ref|XP_002277229.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263882 [Vitis vinifera];; (*TAIR) AT5G58600.1 (e_value=6e-157) | Symbols: PMR5, TBL44 | Plant protein of unknown function (DUF828) | chr5:23683944-23685679 REVERSE LENGTH=402;; (*ITAG) Solyc06g082070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44298357-44301354 transcript_region:SL2.40ch06:44298357..44301354+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00023526g0014.1 protein AED:0.12 eAED:0.12 QI:373|1|0.92|1|0.75|0.84|13|0|584; (*GB) gi|225434548|ref|XP_002277103.1| (e_value=0.0) PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00023526g0021.1 protein AED:0.15 eAED:0.17 QI:103|0.83|0.69|1|0.83|0.84|13|0|584; (*GB) gi|347300850|gb|AEO72339.1| (e_value=0.0) asparagine synthetase 1 [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00023526g0022.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|111; (*ITAG) Solyc04g039720.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30316967-30317527 transcript_region:SL2.40ch04:30316967..30317527- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00008349g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|99; (*GB) gi|224053426|ref|XP_002297813.1| (e_value=4e-18) f-box family protein [Populus trichocarpa];; (*TAIR) AT5G24560.1 (e_value=1e-13) | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B12 | chr5:8402205-8403266 FORWARD LENGTH=251;; (*ITAG) Solyc12g098200.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64155954-64157706 transcript_region:SL2.40ch12:64155954..64157706- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008349g0004.1 protein AED:0.48 eAED:0.71 QI:0|0|0|0.66|0|0|3|0|59 NbS00021115g0004.1 protein AED:0.00 eAED:0.00 QI:132|1|1|1|1|1|2|194|496; (*GB) gi|193245812|gb|ACF17125.1| (e_value=0.0) CER6 [Solanum tuberosum];; (*SWP) sp|Q9XF43|KCS6_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1;; (*TAIR) AT1G68530.1 (e_value=0.0) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497;; (*ITAG) Solyc02g085870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43228977-43231217 transcript_region:SL2.40ch02:43228977..43231217+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00007954g0001.1 protein AED:0.25 eAED:0.25 QI:217|0.4|0.5|1|0.8|0.83|6|0|349; (*GB) gi|379067355|gb|AFC90091.1| (e_value=0.0) eukaryotic initiation factor 4A-14 [Nicotiana benthamiana];; (*SWP) sp|Q6Z2Z4|IF4A3_ORYSJ (e_value=0.0) Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1;; (*TAIR) AT1G54270.1 (e_value=0.0) | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412;; (*ITAG) Solyc06g062800.2.1 (e_value=5e-180) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00007954g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.6|0.5|0.83|1|0.83|6|0|307; (*GB) gi|2500519|sp|Q40466.1|IF413_TOBAC (e_value=5e-155) RecName: Full=Eukaryotic initiation factor 4A-13; Short=eIF-4A-13; AltName: Full=ATP-dependent RNA helicase eIF4A-13;; (*SWP) sp|Q40466|IF413_TOBAC (e_value=2e-156) Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=4e-140) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc08g062800.2.1 (e_value=7e-155) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00035227g0007.1 protein AED:0.25 eAED:0.25 QI:327|0.75|0.6|0.8|0.75|0.8|5|0|181; (*GB) gi|359806549|ref|NP_001241518.1| (e_value=8e-66) uncharacterized protein LOC100788713 [Glycine max];; (*SWP) sp|Q9M815|PCR8_ARATH (e_value=3e-60) Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8 PE=1 SV=2;; (*TAIR) AT1G52200.1 (e_value=2e-61) | Symbols: | PLAC8 family protein | chr1:19442271-19443407 REVERSE LENGTH=190;; (*ITAG) Solyc03g120600.2.1 (e_value=2e-79) genomic_reference:SL2.40ch03 gene_region:63009326-63010426 transcript_region:SL2.40ch03:63009326..63010426- functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00035227g0006.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|158; (*GB) gi|255549922|ref|XP_002516012.1| (e_value=6e-85) Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis];; (*SWP) sp|P45406|CCMH_RHIME (e_value=1e-17) Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) GN=ccmH PE=3 SV=2;; (*TAIR) AT1G15220.2 (e_value=1e-72) | Symbols: ATCCMH, CCMH | cytochrome c biogenesis protein family | chr1:5240471-5241117 REVERSE LENGTH=159;; (*ITAG) Solyc03g120610.2.1 (e_value=1e-94) genomic_reference:SL2.40ch03 gene_region:63010744-63013298 transcript_region:SL2.40ch03:63010744..63013298- go_terms:GO:0005515,GO:0016491 functional_description:"Cytochrome c biogenesis protein-like (AHRD V1 ***- Q6K7S7_ORYSJ); contains Interpro domain(s) IPR005616 Cytochrome C biogenesis protein CcmH "; GO:0005515,GO:0016491 NbS00042214g0006.1 protein AED:0.16 eAED:0.14 QI:251|0.66|0.53|1|0.66|0.76|13|213|719; (*GB) gi|224136770|ref|XP_002322411.1| (e_value=5e-152) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25290.1 (e_value=5e-128) | Symbols: | DNA photolyases;DNA photolyases | chr4:12941486-12944994 REVERSE LENGTH=692;; (*ITAG) Solyc02g062610.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:28904287-28909252 transcript_region:SL2.40ch02:28904287..28909252- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MBG9_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00032002g0003.1 protein AED:0.13 eAED:0.13 QI:144|1|1|1|1|1|3|312|193; (*GB) gi|223029867|gb|ACM78615.1| (e_value=2e-45) non-specific lipid-transfer protein-like protein [Tamarix hispida];; (*SWP) sp|Q9ZVC7|XYP11_ARATH (e_value=9e-20) Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2;; (*TAIR) AT3G43720.2 (e_value=2e-30) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:15615549-15617099 REVERSE LENGTH=191;; (*ITAG) Solyc11g072030.1.1 (e_value=6e-68) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:52404039-52406751 transcript_region:SL2.40ch11:52404039..52406751- functional_description:"Non-specific lipid-transfer protein-like protein (AHRD V1 ***- C0KHK0_9CARY); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00026592g0003.1 protein AED:0.05 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|320; (*GB) gi|225457943|ref|XP_002274137.1| (e_value=6e-109) PREDICTED: thaumatin-like protein 1 [Vitis vinifera];; (*SWP) sp|P28493|PR5_ARATH (e_value=3e-55) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT1G75800.1 (e_value=2e-88) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330;; (*ITAG) Solyc04g081550.2.1 (e_value=1e-117) genomic_reference:SL2.40ch04 gene_region:63087808-63090225 transcript_region:SL2.40ch04:63087808..63090225+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00028255g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|45735466|dbj|BAD13296.1| (e_value=0.0) putative ATPase [Nicotiana tabacum];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=4e-31) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT5G40010.1 (e_value=1e-157) | Symbols: AATP1 | AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514;; (*ITAG) Solyc05g007470.2.1 (e_value=2e-158) genomic_reference:SL2.40ch05 gene_region:2038021-2039981 transcript_region:SL2.40ch05:2038021..2039981+ go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00028255g0013.1 protein AED:0.21 eAED:0.21 QI:223|1|1|1|0.83|0.71|7|506|246; (*GB) gi|350535903|ref|NP_001234731.1| (e_value=3e-133) 5-formyltetrahydrofolate cycloligase [Solanum lycopersicum];; (*SWP) sp|Q9XWE6|MTHFS_CAEEL (e_value=8e-16) Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=2 SV=1;; (*TAIR) AT5G13050.1 (e_value=4e-113) | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase | chr5:4136912-4138711 REVERSE LENGTH=277;; (*ITAG) Solyc03g113590.2.1 (e_value=5e-136) genomic_reference:SL2.40ch03 gene_region:57721492-57728469 transcript_region:SL2.40ch03:57721492..57728469- go_terms:GO:0030272 functional_description:"5-formyltetrahydrofolate cyclo-ligase (AHRD V1 **** B9I331_POPTR); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0030272 NbS00028255g0014.1 protein AED:0.06 eAED:0.06 QI:18|0.5|0.4|1|0.25|0.2|5|6|733; (*GB) gi|255540837|ref|XP_002511483.1| (e_value=7e-175) hypothetical protein RCOM_1512920 [Ricinus communis];; (*TAIR) AT1G74830.1 (e_value=3e-129) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc03g113600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57730078-57733020 transcript_region:SL2.40ch03:57730078..57733020+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00028255g0008.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.33|1|1|3|0|102 NbS00022240g0018.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|383; (*GB) gi|224085469|ref|XP_002307585.1| (e_value=1e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=2e-13) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G63200.1 (e_value=2e-160) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00022240g0019.1 protein AED:0.16 eAED:0.16 QI:61|0.66|0.75|1|0.66|0.75|4|152|282; (*GB) gi|224062494|ref|XP_002300842.1| (e_value=2e-97) predicted protein [Populus trichocarpa];; (*TAIR) AT3G63170.1 (e_value=4e-78) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc06g084260.2.1 (e_value=9e-149) genomic_reference:SL2.40ch06 gene_region:45747996-45753145 transcript_region:SL2.40ch06:45747996..45753145+ go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- B6TFR7_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00022240g0016.1 protein AED:0.16 eAED:0.16 QI:69|1|1|1|1|1|9|612|370; (*GB) gi|359479858|ref|XP_002271564.2| (e_value=8e-179) PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera];; (*SWP) sp|O31743|RBGA_BACSU (e_value=9e-47) Ribosome biogenesis GTPase A OS=Bacillus subtilis (strain 168) GN=rbgA PE=1 SV=1;; (*TAIR) AT4G02790.1 (e_value=3e-152) | Symbols: | GTP-binding family protein | chr4:1247416-1249351 FORWARD LENGTH=372;; (*ITAG) Solyc06g084270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45754284-45760253 transcript_region:SL2.40ch06:45754284..45760253+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7M3D0_ARALY); contains Interpro domain(s) IPR019991 GTP-binding protein, ribosome biogenesis, YlqF "; GO:0003924 NbS00022240g0022.1 protein AED:0.20 eAED:0.20 QI:190|0.78|0.8|0.95|0.52|0.75|20|0|697; (*GB) gi|255552325|ref|XP_002517207.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=0.0) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=0.0) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc06g084250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45738918-45746453 transcript_region:SL2.40ch06:45738918..45746453+ go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00022240g0025.1 protein AED:0.43 eAED:0.57 QI:0|0|0|1|0|0|3|0|147; (*GB) gi|147794001|emb|CAN73325.1| (e_value=8e-23) hypothetical protein VITISV_001830 [Vitis vinifera];; (*TAIR) AT3G63170.1 (e_value=1e-15) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc06g084260.2.1 (e_value=2e-47) genomic_reference:SL2.40ch06 gene_region:45747996-45753145 transcript_region:SL2.40ch06:45747996..45753145+ go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- B6TFR7_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00005948g0012.1 protein AED:0.15 eAED:0.15 QI:71|1|0.9|1|0.77|0.9|10|391|466; (*GB) gi|193290704|gb|ACF17660.1| (e_value=0.0) putative isopropylmalate synthase [Capsicum annuum];; (*SWP) sp|O04973|LEU1A_SOLPN (e_value=0.0) 2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1;; (*TAIR) AT1G74040.1 (e_value=0.0) | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631;; (*ITAG) Solyc06g053400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32654699-32664611 transcript_region:SL2.40ch06:32654699..32664611+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase "; GO:0003852 NbS00005948g0013.1 protein AED:0.33 eAED:0.41 QI:199|0.28|0.37|1|0.71|0.87|8|457|192; (*GB) gi|5669656|gb|AAD46413.1|AF096263_1 (e_value=8e-69) ER33 protein [Solanum lycopersicum];; (*SWP) sp|Q9LT67|BH113_ARATH (e_value=5e-28) Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1;; (*TAIR) AT1G05710.2 (e_value=5e-50) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1716198-1717023 FORWARD LENGTH=171;; (*ITAG) Solyc08g014120.2.1 (e_value=6e-76) genomic_reference:SL2.40ch08 gene_region:3679998-3682484 transcript_region:SL2.40ch08:3679998..3682484+ go_terms:GO:0030528 functional_description:"BHLH transcription factor (AHRD V1 **** Q7XJU2_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00005450g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|0.75|0.66|0.25|4|0|202; (*GB) gi|225426479|ref|XP_002270961.1| (e_value=2e-62) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=9e-15) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G30340.1 (e_value=3e-52) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:11956626-11958969 FORWARD LENGTH=364;; (*ITAG) Solyc04g007590.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1271481-1274405 transcript_region:SL2.40ch04:1271481..1274405- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9LI65_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00024511g0001.1 protein AED:0.36 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|174; (*GB) gi|225455268|ref|XP_002273657.1| (e_value=1e-37) PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84WW2|6PGL5_ARATH (e_value=3e-34) Probable 6-phosphogluconolactonase 5, chloroplastic OS=Arabidopsis thaliana GN=EMB2024 PE=2 SV=1;; (*TAIR) AT5G24400.1 (e_value=3e-35) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc03g082580.2.1 (e_value=2e-59) genomic_reference:SL2.40ch03 gene_region:46048220-46052563 transcript_region:SL2.40ch03:46048220..46052563+ go_terms:GO:0017057 functional_description:"Glucosamine-6-phosphate deaminase (AHRD V1 ***- NAGB_ACHLI); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00005289g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|208; (*GB) gi|225464567|ref|XP_002273259.1| (e_value=3e-72) PREDICTED: UPF0326 protein At4g17486-like [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=3e-13) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT4G25660.1 (e_value=4e-55) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:13083677-13084989 FORWARD LENGTH=255;; (*ITAG) Solyc03g008010.2.1 (e_value=3e-96) genomic_reference:SL2.40ch03 gene_region:2471904-2478161 transcript_region:SL2.40ch03:2471904..2478161- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00005289g0111.1 protein AED:0.00 eAED:0.02 QI:216|1|0.5|1|1|1|2|0|907 NbS00005289g0110.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0|0.75|1|1|4|0|167 NbS00005289g0103.1 protein AED:0.43 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|82 NbS00042308g0005.1 protein AED:0.26 eAED:0.26 QI:320|0.8|0.66|1|0.6|0.33|6|0|255; (*GB) gi|302142040|emb|CBI19243.3| (e_value=3e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G24610.1 (e_value=4e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | chr4:12700837-12707899 REVERSE LENGTH=1150;; (*ITAG) Solyc11g010490.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3550044-3559191 transcript_region:SL2.40ch11:3550044..3559191+ functional_description:"Genomic DNA chromosome 5 P1 clone MNA5 (AHRD V1 **-- Q9FKP6_ARATH)"; NbS00056034g0003.1 protein AED:0.24 eAED:0.24 QI:609|1|1|1|0.8|0.66|6|486|160; (*GB) gi|225444671|ref|XP_002277343.1| (e_value=3e-93) PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Vitis vinifera];; (*SWP) sp|Q68FT1|COQ9_RAT (e_value=4e-36) Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Rattus norvegicus GN=Coq9 PE=2 SV=2;; (*TAIR) AT1G19140.1 (e_value=3e-84) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). | chr1:6611026-6612414 REVERSE LENGTH=311;; (*ITAG) Solyc07g042150.2.1 (e_value=8e-108) genomic_reference:SL2.40ch07 gene_region:52451433-52457664 transcript_region:SL2.40ch07:52451433..52457664- go_terms:GO:0005515 functional_description:"Ubiquinone biosynthesis protein COQ9 mitochondrial (AHRD V1 ***- C1BL51_OSMMO); contains Interpro domain(s) IPR012762 Ubiquinone biosynthesis protein COQ9 "; GO:0005515 NbS00056034g0004.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|702; (*GB) gi|225456313|ref|XP_002280013.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FK33|PP427_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1;; (*TAIR) AT5G50390.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701;; (*ITAG) Solyc07g042130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52436398-52440018 transcript_region:SL2.40ch07:52436398..52440018+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MQ71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00023682g0002.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0|3|0|440; (*GB) gi|350537843|ref|NP_001234313.1| (e_value=3e-85) ethylene response factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9LY05|EF106_ARATH (e_value=6e-37) Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1;; (*TAIR) AT5G07580.1 (e_value=1e-37) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:2399525-2400349 FORWARD LENGTH=274;; (*ITAG) Solyc05g052030.1.1 (e_value=7e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:61516679-61517284 transcript_region:SL2.40ch05:61516679..61517284- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00034263g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|0|0|2|0|243; (*GB) gi|225453604|ref|XP_002267268.1| (e_value=1e-125) PREDICTED: uncharacterized protein LOC100260872 [Vitis vinifera];; (*TAIR) AT2G46760.1 (e_value=6e-115) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=6e-125) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00025244g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|0|306; (*GB) gi|359492489|ref|XP_002285867.2| (e_value=4e-83) PREDICTED: aspartic proteinase Asp1-like [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=1e-46) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G44130.1 (e_value=6e-79) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:16787508-16789318 REVERSE LENGTH=405;; (*ITAG) Solyc06g060130.2.1 (e_value=6e-127) genomic_reference:SL2.40ch06 gene_region:34464964-34469756 transcript_region:SL2.40ch06:34464964..34469756+ go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00035681g0015.1 protein AED:0.18 eAED:0.20 QI:0|0.33|0.25|1|0.33|0.5|4|0|512; (*GB) gi|225428119|ref|XP_002278390.1| (e_value=2e-130) PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Vitis vinifera];; (*SWP) sp|Q8GWA9|PP157_ARATH (e_value=7e-115) Pentatricopeptide repeat-containing protein At2g17033 OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1;; (*TAIR) AT2G17033.1 (e_value=4e-116) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:7401205-7403207 FORWARD LENGTH=504;; (*ITAG) Solyc10g055700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52712205-52713818 transcript_region:SL2.40ch10:52712205..52713818+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L8Q6_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00035681g0013.1 protein AED:0.34 eAED:0.34 QI:0|0.86|0.81|1|0.93|0.87|16|146|529; (*GB) gi|297744550|emb|CBI37812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-80) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G38470.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc10g055720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52722218-52731615 transcript_region:SL2.40ch10:52722218..52731615- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00035681g0014.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.5|0.33|0.5|4|0|122 NbS00035681g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.8|1|1|1|5|0|989; (*GB) gi|357444799|ref|XP_003592677.1| (e_value=0.0) mscS family protein, putative [Medicago truncatula];; (*SWP) sp|Q9SYM1|MSL6_ARATH (e_value=0.0) Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1;; (*TAIR) AT1G78610.1 (e_value=0.0) | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856;; (*ITAG) Solyc10g055710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52715600-52720047 transcript_region:SL2.40ch10:52715600..52720047- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B8LXW9_TALSN); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00002110g0011.1 protein AED:0.06 eAED:0.08 QI:0|1|0|1|1|1|2|0|716; (*GB) gi|302142507|emb|CBI19710.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940Z1|PPR51_ARATH (e_value=3e-106) Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2;; (*TAIR) AT1G19520.1 (e_value=0.0) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26819877-26820809 transcript_region:SL2.40ch07:26819877..26820809- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002110g0002.1 protein AED:0.05 eAED:0.12 QI:2107|0|0.5|1|0|0.5|2|0|643; (*GB) gi|224066211|ref|XP_002302027.1| (e_value=9e-64) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g080520.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62260297-62262138 transcript_region:SL2.40ch04:62260297..62262138+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002110g0013.1 protein AED:0.21 eAED:0.21 QI:251|0.4|0.66|1|0|0.16|6|273|190; (*GB) gi|255538690|ref|XP_002510410.1| (e_value=1e-61) rer1 protein, putative [Ricinus communis];; (*SWP) sp|O48670|RER1A_ARATH (e_value=4e-50) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=3e-51) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc01g109770.2.1 (e_value=5e-54) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00002110g0005.1 protein AED:0.61 eAED:0.91 QI:0|0|0|0.75|1|1|4|0|184 NbS00012857g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|359480917|ref|XP_003632542.1| (e_value=1e-27) PREDICTED: auxin-induced protein X15-like [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=6e-17) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G09530.1 (e_value=6e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr4:6029413-6029724 REVERSE LENGTH=103;; (*ITAG) Solyc06g065220.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37064749-37065042 transcript_region:SL2.40ch06:37064749..37065042- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00012857g0010.1 protein AED:0.15 eAED:0.15 QI:4|1|0|1|1|1|2|0|59 NbS00012857g0011.1 protein AED:0.16 eAED:0.16 QI:459|0.85|0.75|0.87|0.71|0.75|8|0|650; (*GB) gi|225448311|ref|XP_002264923.1| (e_value=9e-142) PREDICTED: uncharacterized protein LOC100257088 [Vitis vinifera];; (*TAIR) AT5G64170.1 (e_value=4e-29) | Symbols: | dentin sialophosphoprotein-related | chr5:25672904-25675445 REVERSE LENGTH=566;; (*ITAG) Solyc01g105120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00012857g0009.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|68; (*GB) gi|255545672|ref|XP_002513896.1| (e_value=2e-18) Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis];; (*TAIR) AT1G22200.2 (e_value=6e-19) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:7838104-7840602 REVERSE LENGTH=338;; (*ITAG) Solyc01g105100.2.1 (e_value=8e-27) genomic_reference:SL2.40ch01 gene_region:85126229-85135705 transcript_region:SL2.40ch01:85126229..85135705- go_terms:GO:0042802 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0042802 NbS00013833g0001.1 protein AED:0.15 eAED:0.44 QI:0|0|0|1|1|1|2|0|587; (*GB) gi|255586815|ref|XP_002534021.1| (e_value=4e-146) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71850.1 (e_value=3e-142) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:27024875-27026287 REVERSE LENGTH=470;; (*ITAG) Solyc11g019970.1.1 (e_value=4e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9879980-9884297 transcript_region:SL2.40ch11:9879980..9884297- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00050781g0007.1 protein AED:0.42 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|97; (*ITAG) Solyc09g009450.1.1 (e_value=6e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2886524-2888669 transcript_region:SL2.40ch09:2886524..2888669- functional_description:"Unknown Protein (AHRD V1)"; NbS00050781g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|0.66|0.5|0.33|3|261|70; (*GB) gi|225440900|ref|XP_002282752.1| (e_value=2e-37) PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LBM4|ISAM1_ARATH (e_value=5e-36) Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2;; (*TAIR) AT2G16710.1 (e_value=4e-37) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137;; (*ITAG) Solyc09g009460.2.1 (e_value=6e-40) genomic_reference:SL2.40ch09 gene_region:2891379-2896236 transcript_region:SL2.40ch09:2891379..2896236+ go_terms:GO:0005515,GO:0005198 functional_description:"Iron-sulfur cluster insertion protein erpA 2 (AHRD V1 *-*- ERPA2_METCA); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; GO:0005515,GO:0005198 NbS00050781g0010.1 protein AED:0.28 eAED:0.28 QI:194|0.33|0.5|1|1|1|4|0|446; (*GB) gi|147805357|emb|CAN71956.1| (e_value=0.0) hypothetical protein VITISV_009884 [Vitis vinifera];; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=0.0) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc09g009470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2898056-2899315 transcript_region:SL2.40ch09:2898056..2899315+ functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00015859g0008.1 protein AED:0.09 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|624; (*GB) gi|225460985|ref|XP_002280336.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=2e-16) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc12g005010.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00009198g0001.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc05g016600.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:17621666-17622100 transcript_region:SL2.40ch05:17621666..17622100+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046780g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|0|0|3|0|264; (*GB) gi|255574438|ref|XP_002528132.1| (e_value=3e-65) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q3E9B5|PTR51_ARATH (e_value=2e-49) Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1;; (*TAIR) AT5G19640.1 (e_value=1e-50) | Symbols: | Major facilitator superfamily protein | chr5:6636460-6638590 FORWARD LENGTH=609;; (*ITAG) Solyc01g006440.1.1 (e_value=8e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1047474-1051067 transcript_region:SL2.40ch01:1047474..1051067- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00021683g0004.1 protein AED:0.23 eAED:0.23 QI:101|0.25|0.2|0.8|1|1|5|0|212; (*GB) gi|170773910|gb|ACB32231.1| (e_value=4e-85) nascent polypeptide associated complex alpha [Solanum chacoense];; (*SWP) sp|Q9M612|NACA_PINTA (e_value=6e-67) Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G12390.1 (e_value=4e-61) | Symbols: | Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203;; (*ITAG) Solyc10g078150.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59347336-59350221 transcript_region:SL2.40ch10:59347336..59350221+ functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6T903_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; NbS00035652g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|224089971|ref|XP_002308886.1| (e_value=8e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g078440.1.1 (e_value=5e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59592591-59593016 transcript_region:SL2.40ch10:59592591..59593016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00015529g0004.1 protein AED:0.05 eAED:0.05 QI:316|0.66|0.8|1|1|1|10|257|665; (*GB) gi|225436114|ref|XP_002278363.1| (e_value=0.0) PREDICTED: lysosomal beta glucosidase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=8e-60) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41894196-41899465 transcript_region:SL2.40ch06:41894196..41899465+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00006115g0014.1 protein AED:0.40 eAED:0.40 QI:87|0.8|0.66|0.83|0.4|0.33|6|0|151; (*GB) gi|217071594|gb|ACJ84157.1| (e_value=4e-75) unknown [Medicago truncatula];; (*SWP) sp|Q557G3|TPPC1_DICDI (e_value=9e-22) Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1;; (*TAIR) AT1G51160.2 (e_value=4e-76) | Symbols: | SNARE-like superfamily protein | chr1:18950057-18951560 FORWARD LENGTH=169;; (*ITAG) Solyc03g007680.2.1 (e_value=2e-80) genomic_reference:SL2.40ch03 gene_region:2206118-2210847 transcript_region:SL2.40ch03:2206118..2210847+ go_terms:GO:0005515,GO:0017112 functional_description:"Trafficking protein particle complex subunit 4 (AHRD V1 ***- B2WD65_PYRTR); contains Interpro domain(s) IPR007233 Sybindin-like protein "; GO:0005515,GO:0017112 NbS00006115g0017.1 protein AED:0.41 eAED:0.43 QI:0|0.5|0.6|1|0.25|0.4|5|165|104; (*TAIR) AT2G32700.2 (e_value=1e-12) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=787;; (*ITAG) Solyc02g078000.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:37378561-37392436 transcript_region:SL2.40ch02:37378561..37392436- functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00006115g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|631; (*GB) gi|225464655|ref|XP_002276766.1| (e_value=0.0) PREDICTED: ABC transporter G family member 8-like [Vitis vinifera];; (*SWP) sp|Q9FLX5|AB8G_ARATH (e_value=0.0) ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1;; (*TAIR) AT5G52860.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:21419776-21421545 REVERSE LENGTH=589;; (*ITAG) Solyc03g007690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2213503-2215296 transcript_region:SL2.40ch03:2213503..2215296- go_terms:GO:0008559 functional_description:"ABC transporter G family member 8 (AHRD V1 ***- AB8G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00006115g0011.1 protein AED:0.20 eAED:0.20 QI:25|0|0.5|1|0|1|2|0|105 NbS00006115g0009.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.12|1|1|8|0|309; (*ITAG) Solyc04g011910.2.1 (e_value=3e-17) genomic_reference:SL2.40ch04 gene_region:4291763-4293737 transcript_region:SL2.40ch04:4291763..4293737- functional_description:"Os03g0169900 protein (Fragment) (AHRD V1 ***- Q0DUS0_ORYSJ)"; NbS00027745g0001.1 protein AED:0.87 eAED:0.87 QI:0|-1|0|1|-1|1|1|0|79 NbS00027745g0004.1 protein AED:0.25 eAED:0.47 QI:0|0|0|1|0|0|3|0|210; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-18) hypothetical protein [Nicotiana tabacum]; NbS00013247g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|255575237|ref|XP_002528522.1| (e_value=1e-170) disulfide oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q39242|TRXB2_ARATH (e_value=2e-166) Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2;; (*TAIR) AT2G17420.1 (e_value=6e-168) | Symbols: NTRA, ATNTRA, NTR2 | NADPH-dependent thioredoxin reductase A | chr2:7564357-7566219 FORWARD LENGTH=378;; (*ITAG) Solyc02g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40521256-40525895 transcript_region:SL2.40ch02:40521256..40525895+ go_terms:GO:0004791 functional_description:"Thioredoxin reductase (AHRD V1 **** B9SRA3_RICCO); contains Interpro domain(s) IPR005982 Thioredoxin reductase "; GO:0004791 NbS00013247g0004.1 protein AED:0.48 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|79 NbS00034803g0004.1 protein AED:0.08 eAED:0.08 QI:53|1|1|1|0.8|0.66|6|231|259; (*GB) gi|297745839|emb|CBI15895.3| (e_value=2e-60) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07060.1 (e_value=6e-37) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2167138-2168397 REVERSE LENGTH=233;; (*ITAG) Solyc06g082320.2.1 (e_value=1e-114) genomic_reference:SL2.40ch06 gene_region:44470958-44473727 transcript_region:SL2.40ch06:44470958..44473727- functional_description:"Unknown Protein (AHRD V1)"; NbS00017111g0004.1 protein AED:0.05 eAED:0.05 QI:204|1|0.66|1|1|1|3|0|293; (*GB) gi|225469216|ref|XP_002264407.1| (e_value=3e-86) PREDICTED: transcription factor bHLH93-like [Vitis vinifera];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=6e-52) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=4e-53) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc02g063430.2.1 (e_value=7e-127) genomic_reference:SL2.40ch02 gene_region:30098703-30101097 transcript_region:SL2.40ch02:30098703..30101097- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbC26070204g0004.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|469; (*GB) gi|37983539|gb|AAR06289.1| (e_value=0.0) 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum];; (*SWP) sp|P52418|PUR1_SOYBN (e_value=0.0) Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1;; (*TAIR) AT4G34740.1 (e_value=0.0) | Symbols: ATASE2, CIA1, ATPURF2, ASE2 | GLN phosphoribosyl pyrophosphate amidotransferase 2 | chr4:16574894-16576579 REVERSE LENGTH=561;; (*ITAG) Solyc01g110520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88954731-88956779 transcript_region:SL2.40ch01:88954731..88956779- go_terms:GO:0004044 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 *-*- GLMS_METKA); contains Interpro domain(s) IPR005854 Amidophosphoribosyl transferase "; GO:0004044 NbS00001969g0002.1 protein AED:0.42 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|350535533|ref|NP_001234711.1| (e_value=1e-24) protein SUPPRESSOR OF GENE SILENCING 3 [Solanum lycopersicum];; (*SWP) sp|A5YVF1|SGS3_SOLLC (e_value=4e-26) Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1;; (*TAIR) AT5G23570.1 (e_value=1e-16) | Symbols: SGS3, ATSGS3 | XS domain-containing protein / XS zinc finger domain-containing protein-related | chr5:7943621-7945874 FORWARD LENGTH=625;; (*ITAG) Solyc04g025300.2.1 (e_value=2e-27) genomic_reference:SL2.40ch04 gene_region:19194330-19198117 transcript_region:SL2.40ch04:19194330..19198117- functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 ***- SGS3_SOLLC)"; NbS00001969g0007.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|2|0|298; (*GB) gi|350535533|ref|NP_001234711.1| (e_value=3e-60) protein SUPPRESSOR OF GENE SILENCING 3 [Solanum lycopersicum];; (*SWP) sp|A5YVF1|SGS3_SOLLC (e_value=1e-61) Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1;; (*TAIR) AT5G23570.1 (e_value=1e-23) | Symbols: SGS3, ATSGS3 | XS domain-containing protein / XS zinc finger domain-containing protein-related | chr5:7943621-7945874 FORWARD LENGTH=625;; (*ITAG) Solyc04g025300.2.1 (e_value=6e-63) genomic_reference:SL2.40ch04 gene_region:19194330-19198117 transcript_region:SL2.40ch04:19194330..19198117- functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 ***- SGS3_SOLLC)"; NbS00040382g0009.1 protein AED:0.36 eAED:0.38 QI:0|0.58|0.53|1|0.58|0.69|13|782|449; (*GB) gi|42569106|ref|NP_179349.2| (e_value=7e-95) polynucleotide adenylyltransferase-like protein [Arabidopsis thaliana];; (*SWP) sp|P44439|PCNB_HAEIN (e_value=9e-21) Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1;; (*TAIR) AT2G17580.1 (e_value=2e-97) | Symbols: | Polynucleotide adenylyltransferase family protein | chr2:7646507-7650066 FORWARD LENGTH=757;; (*ITAG) Solyc02g082810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00040382g0005.1 protein AED:0.52 eAED:0.63 QI:239|0.33|0.5|0.75|1|1|4|0|108; (*ITAG) Solyc02g082810.2.1 (e_value=4e-24) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00004688g0005.1 protein AED:0.16 eAED:0.16 QI:196|0.6|0.5|1|1|0.83|6|0|347; (*GB) gi|358248564|ref|NP_001239647.1| (e_value=2e-61) uncharacterized protein LOC100808454 [Glycine max];; (*TAIR) AT5G50740.1 (e_value=8e-51) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637847 REVERSE LENGTH=283;; (*ITAG) Solyc03g097380.2.1 (e_value=7e-68) genomic_reference:SL2.40ch03 gene_region:53164694-53166669 transcript_region:SL2.40ch03:53164694..53166669+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q7XG81_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00029464g0005.1 protein AED:0.02 eAED:0.02 QI:154|1|1|1|1|1|2|298|299; (*GB) gi|225456608|ref|XP_002266193.1| (e_value=2e-59) PREDICTED: uncharacterized protein LOC100263952 [Vitis vinifera];; (*TAIR) AT5G20110.1 (e_value=1e-26) | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209;; (*ITAG) Solyc03g113540.2.1 (e_value=2e-133) genomic_reference:SL2.40ch03 gene_region:57704166-57705303 transcript_region:SL2.40ch03:57704166..57705303+ go_terms:GO:0005875 functional_description:"Dynein light chain cytoplasmic (AHRD V1 *-*- A7ELJ7_SCLS1); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0005875 NbS00003519g0011.1 protein AED:0.01 eAED:0.01 QI:40|1|1|1|1|1|3|343|234; (*GB) gi|224131464|ref|XP_002321091.1| (e_value=4e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAC0|ZCIS_ARATH (e_value=2e-139) 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1;; (*TAIR) AT1G10830.1 (e_value=1e-140) | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene isomerase | chr1:3605736-3607449 REVERSE LENGTH=367;; (*ITAG) Solyc12g098710.1.1 (e_value=3e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64466750-64470757 transcript_region:SL2.40ch12:64466750..64470757+ functional_description:"15-cis-zeta-carotene isomerase"; NbS00003519g0015.1 protein AED:0.28 eAED:0.29 QI:0|0.25|0|1|0|0.6|5|0|351; (*GB) gi|147818072|emb|CAN62797.1| (e_value=2e-140) hypothetical protein VITISV_026840 [Vitis vinifera];; (*SWP) sp|Q9SIT6|AB5G_ARATH (e_value=1e-34) ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1;; (*TAIR) AT2G13610.1 (e_value=8e-36) | Symbols: | ABC-2 type transporter family protein | chr2:5673827-5675776 REVERSE LENGTH=649;; (*ITAG) Solyc09g098410.1.1 (e_value=3e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67501233-67504013 transcript_region:SL2.40ch09:67501233..67504013+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 19 (AHRD V1 *-*- AB19G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00003519g0016.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|291; (*GB) gi|356529710|ref|XP_003533431.1| (e_value=9e-161) PREDICTED: ABC transporter G family member 6-like [Glycine max];; (*SWP) sp|Q9M3D6|AB19G_ARATH (e_value=5e-72) ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1;; (*TAIR) AT3G55130.1 (e_value=4e-73) | Symbols: ATWBC19, WBC19 | white-brown complex homolog 19 | chr3:20434111-20436288 REVERSE LENGTH=725;; (*ITAG) Solyc09g098410.1.1 (e_value=8e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67501233-67504013 transcript_region:SL2.40ch09:67501233..67504013+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 19 (AHRD V1 *-*- AB19G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00003519g0018.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-54) hypothetical protein [Nicotiana tabacum]; NbS00003519g0017.1 protein AED:0.51 eAED:0.56 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|57013940|ref|YP_173413.1| (e_value=3e-38) hypothetical protein NitaMp069 [Nicotiana tabacum]; NbS00018986g0013.1 protein AED:0.01 eAED:0.01 QI:5|1|1|1|1|1|2|285|225; (*GB) gi|359489701|ref|XP_002276598.2| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100249906 [Vitis vinifera];; (*ITAG) Solyc05g050240.2.1 (e_value=6e-66) genomic_reference:SL2.40ch05 gene_region:59430798-59431765 transcript_region:SL2.40ch05:59430798..59431765+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018986g0012.1 protein AED:0.13 eAED:0.13 QI:160|1|1|1|0.75|0.8|5|408|148; (*GB) gi|356532139|ref|XP_003534631.1| (e_value=8e-106) PREDICTED: ubiquitin-conjugating enzyme E2 28-like isoform 1 [Glycine max];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=1e-106) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=8e-108) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc05g050230.2.1 (e_value=8e-109) genomic_reference:SL2.40ch05 gene_region:59425821-59429488 transcript_region:SL2.40ch05:59425821..59429488+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00018986g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.63|0.90|1|1|11|0|413; (*GB) gi|728628|emb|CAA88493.1| (e_value=0.0) TAF-3 [Nicotiana tabacum];; (*SWP) sp|Q99089|CPRF1_PETCR (e_value=2e-115) Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1;; (*TAIR) AT2G46270.1 (e_value=2e-77) | Symbols: GBF3 | G-box binding factor 3 | chr2:19000859-19002901 FORWARD LENGTH=382;; (*ITAG) Solyc05g050220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59415665-59420568 transcript_region:SL2.40ch05:59415665..59420568+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00018986g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|124 NbS00030177g0004.1 protein AED:0.15 eAED:0.15 QI:175|1|1|1|0.85|0.86|22|678|711; (*GB) gi|359474143|ref|XP_002280701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249628 [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=1e-101) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT4G10730.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2932902-2942562 transcript_region:SL2.40ch08:2932902..2942562- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC24525401g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|0|1|0|90; (*GB) gi|359488099|ref|XP_002266715.2| (e_value=1e-39) PREDICTED: ankyrin repeat domain-containing protein 13B-like [Vitis vinifera];; (*TAIR) AT3G04470.1 (e_value=2e-22) | Symbols: | Ankyrin repeat family protein | chr3:1189841-1191853 REVERSE LENGTH=640;; (*ITAG) Solyc05g054970.2.1 (e_value=2e-52) genomic_reference:SL2.40ch05 gene_region:63896453-63900703 transcript_region:SL2.40ch05:63896453..63900703- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00001870g0010.1 protein AED:0.10 eAED:0.11 QI:0|0.81|0.58|0.91|0.81|0.75|12|0|733; (*GB) gi|33186651|gb|AAP97495.1| (e_value=0.0) cellulose synthase [Solanum tuberosum];; (*SWP) sp|Q941L0|CESA3_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2;; (*TAIR) AT5G05170.1 (e_value=0.0) | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065;; (*ITAG) Solyc01g087210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73892563-73901116 transcript_region:SL2.40ch01:73892563..73901116- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6XP46_SOLTU); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00001870g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|284; (*GB) gi|225439176|ref|XP_002274655.1| (e_value=3e-112) PREDICTED: uncharacterized protein LOC100258667 [Vitis vinifera];; (*TAIR) AT3G09180.1 (e_value=1e-94) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402;; (*ITAG) Solyc01g087230.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:73917170-73918585 transcript_region:SL2.40ch01:73917170..73918585+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001870g0002.1 protein AED:0.40 eAED:0.40 QI:367|1|0.5|1|0|0|2|0|110; (*GB) gi|224140028|ref|XP_002323389.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09180.1 (e_value=1e-37) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402;; (*ITAG) Solyc01g087230.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:73917170-73918585 transcript_region:SL2.40ch01:73917170..73918585+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001154g0010.1 protein AED:0.07 eAED:0.08 QI:0|1|0.33|1|1|0.66|3|0|822; (*GB) gi|225426078|ref|XP_002272080.1| (e_value=0.0) PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=0.0) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.1 (e_value=0.0) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16641146 REVERSE LENGTH=810;; (*ITAG) Solyc12g056160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47478031-47481044 transcript_region:SL2.40ch12:47478031..47481044+ go_terms:GO:0016021 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 ***- CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0016021 NbS00001154g0015.1 protein AED:0.41 eAED:0.41 QI:0|0.37|0.44|0.55|0.5|0.44|9|55|307; (*GB) gi|255537663|ref|XP_002509898.1| (e_value=7e-89) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g056150.1.1 (e_value=1e-111) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47466156-47469182 transcript_region:SL2.40ch12:47466156..47469182+ go_terms:GO:0042318 functional_description:"Peptidase C45 acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase (AHRD V1 **-- B6THR2_MAIZE); contains Interpro domain(s) IPR005079 Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase "; GO:0042318 NbS00001154g0003.1 protein AED:0.55 eAED:0.89 QI:0|0|0|0.66|1|1|3|0|93 NbS00001154g0011.1 protein AED:0.23 eAED:0.23 QI:253|0.8|0.66|1|1|1|6|450|632; (*GB) gi|297742250|emb|CBI34399.3| (e_value=3e-101) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G64050.2 (e_value=1e-49) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr1:23762584-23765714 FORWARD LENGTH=666;; (*ITAG) Solyc12g056170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47483636-47492298 transcript_region:SL2.40ch12:47483636..47492298- functional_description:"Unknown Protein (AHRD V1)"; NbS00007952g0009.1 protein AED:0.22 eAED:0.26 QI:116|0.76|0.72|1|0.71|0.81|22|0|946; (*GB) gi|225445943|ref|XP_002263967.1| (e_value=0.0) PREDICTED: DNA ligase 4-like [Vitis vinifera];; (*SWP) sp|Q9LL84|DNLI4_ARATH (e_value=0.0) DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1;; (*TAIR) AT5G57160.1 (e_value=0.0) | Symbols: ATLIG4, LIG4 | DNA ligase IV | chr5:23155150-23161688 REVERSE LENGTH=1219;; (*ITAG) Solyc07g017990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8737595-8770718 transcript_region:SL2.40ch07:8737595..8770718+ go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- D7MMS2_ARALY); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00003674g0005.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|1|2|240|218; (*GB) gi|359486390|ref|XP_002272668.2| (e_value=1e-62) PREDICTED: transcription factor bHLH51-like [Vitis vinifera];; (*SWP) sp|Q9XEF0|BH051_ARATH (e_value=1e-43) Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1;; (*TAIR) AT2G40200.1 (e_value=8e-45) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:16791098-16792027 FORWARD LENGTH=254;; (*ITAG) Solyc06g051260.2.1 (e_value=3e-83) genomic_reference:SL2.40ch06 gene_region:30986026-30987403 transcript_region:SL2.40ch06:30986026..30987403+ go_terms:GO:0003700 functional_description:"Transcription factor bHLH51 (AHRD V1 **-* BH051_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00030403g0002.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0|2|140|176; (*GB) gi|225446615|ref|XP_002280666.1| (e_value=4e-94) PREDICTED: uncharacterized protein LOC100266079 [Vitis vinifera];; (*TAIR) AT2G42610.2 (e_value=2e-84) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc10g008000.1.1 (e_value=3e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2170166-2170702 transcript_region:SL2.40ch10:2170166..2170702+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00003031g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|402 NbS00005119g0003.1 protein AED:0.27 eAED:0.27 QI:111|1|1|1|1|1|3|349|194; (*GB) gi|77416921|gb|ABA81856.1| (e_value=9e-133) unknown [Solanum tuberosum];; (*SWP) sp|P49209|RL91_ARATH (e_value=4e-122) 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3;; (*TAIR) AT1G33140.1 (e_value=3e-123) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc08g014550.2.1 (e_value=6e-138) genomic_reference:SL2.40ch08 gene_region:4642663-4644841 transcript_region:SL2.40ch08:4642663..4644841+ go_terms:GO:0003735 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 "; GO:0003735 NbS00037737g0009.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|0.5|2|423|65; (*GB) gi|224082922|ref|XP_002306892.1| (e_value=1e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FWT2|UBC16_ARATH (e_value=9e-29) Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1;; (*TAIR) AT1G75440.1 (e_value=7e-30) | Symbols: UBC16 | ubiquitin-conjugating enzyme 16 | chr1:28313623-28314960 FORWARD LENGTH=161;; (*ITAG) Solyc04g080810.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:62479013-62483424 transcript_region:SL2.40ch04:62479013..62483424- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00037737g0008.1 protein AED:0.22 eAED:0.23 QI:0|0.8|0.72|1|0.5|0.54|11|367|373; (*GB) gi|302142558|emb|CBI19761.3| (e_value=1e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|P74038|RSMI_SYNY3 (e_value=1e-59) Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmI PE=3 SV=1;; (*TAIR) AT1G45110.1 (e_value=2e-141) | Symbols: | Tetrapyrrole (Corrin/Porphyrin) Methylases | chr1:17052572-17054546 FORWARD LENGTH=343;; (*ITAG) Solyc04g080800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62473043-62478543 transcript_region:SL2.40ch04:62473043..62478543- go_terms:GO:0005515,GO:0003824 functional_description:"Ribosomal RNA small subunit methyltransferase I (AHRD V1 ***- RSMI_SYNY3); contains Interpro domain(s) IPR008189 Uncharacterised protein family UPF0011 "; GO:0005515,GO:0003824 NbS00037737g0007.1 protein AED:0.45 eAED:0.75 QI:0|0|0|1|0|0|3|0|174 NbS00001777g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|247; (*GB) gi|224109362|ref|XP_002315172.1| (e_value=2e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|O04202|EIF3F_ARATH (e_value=1e-106) Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1;; (*TAIR) AT2G39990.1 (e_value=1e-107) | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293;; (*ITAG) Solyc11g013440.1.1 (e_value=3e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6453735-6462143 transcript_region:SL2.40ch11:6453735..6462143+ functional_description:"Eukaryotic translation initiation factor 3 subunit 5 (AHRD V1 ***- B4FRD9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00001777g0014.1 protein AED:0.33 eAED:0.33 QI:409|0.6|0.5|0.83|0.2|0.33|6|0|247; (*GB) gi|225456773|ref|XP_002276720.1| (e_value=6e-90) PREDICTED: uncharacterized protein LOC100251822 [Vitis vinifera];; (*TAIR) AT1G24440.1 (e_value=7e-80) | Symbols: | RING/U-box superfamily protein | chr1:8662340-8663777 FORWARD LENGTH=251;; (*ITAG) Solyc03g111510.2.1 (e_value=3e-128) genomic_reference:SL2.40ch03 gene_region:56169954-56173025 transcript_region:SL2.40ch03:56169954..56173025+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00001777g0012.1 protein AED:0.09 eAED:0.09 QI:174|0.8|0.66|1|0.2|0.33|6|493|490; (*GB) gi|297733628|emb|CBI14875.3| (e_value=4e-74) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5N6V0|Y1054_ORYSJ (e_value=2e-15) B3 domain-containing protein Os01g0905400 OS=Oryza sativa subsp. japonica GN=Os01g0905400 PE=2 SV=1;; (*ITAG) Solyc03g111500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56155588-56162558 transcript_region:SL2.40ch03:56155588..56162558- go_terms:GO:0005737,GO:0006355 functional_description:"B3 domain-containing protein Os01g0905400 (AHRD V1 *-*- Y1054_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005737,GO:0006355 NbS00030977g0004.1 protein AED:0.02 eAED:0.02 QI:220|1|1|1|1|1|2|168|190; (*GB) gi|255572337|ref|XP_002527107.1| (e_value=2e-71) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71780.1 (e_value=1e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26995406-26996638 REVERSE LENGTH=197;; (*ITAG) Solyc12g056760.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48206491-48209551 transcript_region:SL2.40ch12:48206491..48209551- functional_description:"Unknown Protein (AHRD V1)"; NbS00012888g0005.1 protein AED:0.68 eAED:0.77 QI:0|0|0|0.5|0.66|0.75|4|0|103; (*GB) gi|147765769|emb|CAN68980.1| (e_value=5e-18) hypothetical protein VITISV_004150 [Vitis vinifera];; (*TAIR) AT1G79620.1 (e_value=1e-15) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc01g102680.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:83176089-83185689 transcript_region:SL2.40ch01:83176089..83185689+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00028165g0004.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|71; (*ITAG) Solyc03g119180.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:61910021-61910245 transcript_region:SL2.40ch03:61910021..61910245- functional_description:"Unknown Protein (AHRD V1)"; NbS00028165g0009.1 protein AED:0.10 eAED:0.10 QI:111|0.75|0.6|1|0.25|0.2|5|57|197; (*GB) gi|356520621|ref|XP_003528960.1| (e_value=2e-70) PREDICTED: reticulon-like protein B9-like [Glycine max];; (*SWP) sp|Q9LJQ5|RTNLI_ARATH (e_value=2e-63) Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1;; (*TAIR) AT3G18260.1 (e_value=2e-64) | Symbols: | Reticulon family protein | chr3:6260328-6261504 REVERSE LENGTH=225;; (*ITAG) Solyc03g119190.2.1 (e_value=5e-121) genomic_reference:SL2.40ch03 gene_region:61911647-61913094 transcript_region:SL2.40ch03:61911647..61913094- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7LDX0_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00028165g0008.1 protein AED:0.08 eAED:0.08 QI:228|1|1|1|0.83|0.42|7|327|432; (*GB) gi|225456012|ref|XP_002277056.1| (e_value=0.0) PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera];; (*SWP) sp|O34508|AEEP_BACSU (e_value=4e-49) L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB PE=1 SV=1;; (*TAIR) AT3G18270.1 (e_value=0.0) | Symbols: CYP77A5P | cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene | chr3:6262010-6264025 FORWARD LENGTH=410;; (*ITAG) Solyc03g119200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61916311-61921325 transcript_region:SL2.40ch03:61916311..61921325+ go_terms:GO:0016855,GO:0018838 functional_description:"Mandelate racemase/muconate lactonizing enzyme family protein (AHRD V1 **** A9GEI3_SORC5); contains Interpro domain(s) IPR001354 Mandelate racemase/muconate lactonizing enzyme "; GO:0016855,GO:0018838 NbS00027244g0004.1 protein AED:0.28 eAED:0.32 QI:337|0.4|0.33|1|0.6|0.5|6|0|718; (*GB) gi|359475869|ref|XP_002283146.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252640 [Vitis vinifera];; (*SWP) sp|Q91Z38|TTC1_MOUSE (e_value=1e-14) Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=1e-178) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc08g029190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22914324-22916720 transcript_region:SL2.40ch08:22914324..22916720+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003625g0011.1 protein AED:0.04 eAED:0.04 QI:98|1|1|1|0.4|0.5|6|292|233; (*GB) gi|77416981|gb|ABA81886.1| (e_value=5e-121) unknown [Solanum tuberosum];; (*SWP) sp|Q96F25|ALG14_HUMAN (e_value=1e-41) UDP-N-acetylglucosamine transferase subunit ALG14 homolog OS=Homo sapiens GN=ALG14 PE=2 SV=1;; (*TAIR) AT4G18230.1 (e_value=3e-99) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | chr4:10080521-10081710 REVERSE LENGTH=233;; (*ITAG) Solyc03g005800.2.1 (e_value=3e-115) genomic_reference:SL2.40ch03 gene_region:548122-550898 transcript_region:SL2.40ch03:548122..550898+ go_terms:GO:0043495,GO:0004577 functional_description:"UDP-N-acetylglucosamine transferase subunit ALG14 (AHRD V1 ***- B6U4N4_MAIZE); contains Interpro domain(s) IPR013969 Oligosaccharide biosynthesis protein Alg14 like "; GO:0043495,GO:0004577 NbS00003625g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27492|CB21_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=6e-166) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00003625g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27496|CB25_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-165) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00003625g0010.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|195; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=2e-112) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27492|CB21_TOBAC (e_value=2e-113) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=6e-95) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=2e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00003625g0009.1 protein AED:0.38 eAED:0.59 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|356566488|ref|XP_003551463.1| (e_value=2e-15) PREDICTED: probable purine permease 9-like [Glycine max];; (*SWP) sp|O49726|PUP9_ARATH (e_value=7e-15) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18220.1 (e_value=6e-16) | Symbols: | Drug/metabolite transporter superfamily protein | chr4:10078768-10080109 FORWARD LENGTH=344;; (*ITAG) Solyc02g071110.2.1 (e_value=4e-19) genomic_reference:SL2.40ch02 gene_region:35169375-35173055 transcript_region:SL2.40ch02:35169375..35173055- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00057077g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.88|0.88|1|0.82|0.94|18|244|956; (*GB) gi|75318818|sp|O82039.1|SPY_PETHY (e_value=0.0) RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY;; (*SWP) sp|O82039|SPY_PETHY (e_value=0.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1;; (*TAIR) AT3G11540.1 (e_value=0.0) | Symbols: SPY | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:3632842-3637547 FORWARD LENGTH=914;; (*ITAG) Solyc09g010180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3556738-3572844 transcript_region:SL2.40ch09:3556738..3572844+ go_terms:GO:0016262 functional_description:"TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; GO:0016262 NbS00027695g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|124; (*ITAG) Solyc07g006450.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1251302-1252609 transcript_region:SL2.40ch07:1251302..1252609+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00027695g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|5|0|658; (*GB) gi|224111722|ref|XP_002315953.1| (e_value=8e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=2e-43) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=2e-44) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1247767-1249215 transcript_region:SL2.40ch07:1247767..1249215+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbC26003603g0002.1 protein AED:0.00 eAED:0.00 QI:278|1|0.66|1|0.5|0.66|3|0|116; (*GB) gi|350535573|ref|NP_001234713.1| (e_value=2e-60) TK1-like deoxyribonucleoside kinase [Solanum lycopersicum];; (*SWP) sp|O81263|KITH_ORYSJ (e_value=6e-47) Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2;; (*TAIR) AT3G07800.1 (e_value=5e-47) | Symbols: | Thymidine kinase | chr3:2489944-2490935 REVERSE LENGTH=238;; (*ITAG) Solyc11g065760.1.1 (e_value=4e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48443570-48446534 transcript_region:SL2.40ch11:48443570..48446534- go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- Q71F77_SOLLC); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00010293g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|197 NbS00047587g0010.1 protein AED:0.16 eAED:0.17 QI:50|0.33|0.25|1|0.33|0.25|4|0|368; (*GB) gi|297735070|emb|CBI17432.3| (e_value=4e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q09522|DIM1_CAEEL (e_value=3e-54) Probable dimethyladenosine transferase OS=Caenorhabditis elegans GN=E02H1.1 PE=2 SV=2;; (*TAIR) AT5G66360.2 (e_value=4e-94) | Symbols: | Ribosomal RNA adenine dimethylase family protein | chr5:26510329-26511711 FORWARD LENGTH=380;; (*ITAG) Solyc02g084730.2.1 (e_value=3e-178) genomic_reference:SL2.40ch02 gene_region:42417193-42418872 transcript_region:SL2.40ch02:42417193..42418872+ go_terms:GO:0000179 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 *-*- C2HM18_LACAC); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000179 NbS00002430g0001.1 protein AED:0.05 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=1e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g070620.2.1 (e_value=2e-155) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00002430g0004.1 protein AED:0.21 eAED:0.31 QI:46|1|0.5|1|0|0|2|0|82 NbC23602799g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|53793731|gb|AAU93594.1| (e_value=3e-51) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=8e-50) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=6e-51) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc04g005680.2.1 (e_value=5e-54) genomic_reference:SL2.40ch04 gene_region:447068-450082 transcript_region:SL2.40ch04:447068..450082- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR002942 RNA-binding S4 IPR018079 Ribosomal protein S4, conserved site IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00042857g0004.1 protein AED:0.30 eAED:0.30 QI:265|0.33|0.25|0.5|1|0.75|4|0|130 NbS00011586g0004.1 protein AED:0.25 eAED:0.64 QI:81|0|0.2|1|0|0|5|0|161; (*GB) gi|9794870|gb|AAF98369.1|AF158253_1 (e_value=3e-31) patatin-like protein 3 [Nicotiana tabacum];; (*TAIR) AT2G26560.1 (e_value=1e-15) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc02g090490.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:46594534-46596748 transcript_region:SL2.40ch02:46594534..46596748- go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00011586g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.77|0.8|1|0.88|0.8|10|65|431; (*GB) gi|224081585|ref|XP_002306460.1| (e_value=1e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=1e-158) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1;; (*TAIR) AT2G15790.1 (e_value=1e-159) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361;; (*ITAG) Solyc02g090480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46588712-46594323 transcript_region:SL2.40ch02:46588712..46594323+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003755 NbS00010189g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|413; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-46) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094740.1.1 (e_value=2e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010189g0007.1 protein AED:0.29 eAED:0.30 QI:0|0|0.25|1|0|0.25|4|712|251; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-43) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g050450.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:46388272-46390482 transcript_region:SL2.40ch04:46388272..46390482- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00027667g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|357485249|ref|XP_003612912.1| (e_value=3e-16) hypothetical protein MTR_5g030470 [Medicago truncatula];; (*ITAG) Solyc08g005040.1.1 (e_value=5e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:29865-30203 transcript_region:SL2.40ch08:29865..30203- functional_description:"Unknown Protein (AHRD V1)"; NbS00027667g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|131; (*GB) gi|225462912|ref|XP_002266548.1| (e_value=2e-27) PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9M5Q1|FUT1_PEA (e_value=4e-26) Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1;; (*TAIR) AT1G14100.1 (e_value=5e-22) | Symbols: FUT8 | fucosyltransferase 8 | chr1:4827961-4829587 FORWARD LENGTH=516;; (*ITAG) Solyc07g047920.1.1 (e_value=7e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56451952-56454673 transcript_region:SL2.40ch07:56451952..56454673- go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00013422g0020.1 protein AED:0.05 eAED:0.05 QI:202|0.71|0.75|0.87|0.42|0.37|8|545|350; (*GB) gi|359488373|ref|XP_002278322.2| (e_value=2e-70) PREDICTED: transcription factor BIM2-like [Vitis vinifera];; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=3e-37) Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1;; (*TAIR) AT1G69010.1 (e_value=2e-38) | Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311;; (*ITAG) Solyc03g046570.2.1 (e_value=5e-83) genomic_reference:SL2.40ch03 gene_region:17150323-17152819 transcript_region:SL2.40ch03:17150323..17152819+ functional_description:"BHLH domain class transcription factor (AHRD V1 ***- D9ZIP3_MALDO)"; NbS00013422g0021.1 protein AED:0.23 eAED:0.23 QI:466|1|1|1|0.5|0.6|5|415|236; (*GB) gi|255569920|ref|XP_002525923.1| (e_value=8e-109) 60S ribosomal protein L7a, putative [Ricinus communis];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=1e-74) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G38895.1 (e_value=9e-79) | Symbols: | RING/U-box superfamily protein | chr5:15572084-15573315 FORWARD LENGTH=221;; (*ITAG) Solyc02g089240.2.1 (e_value=2e-118) genomic_reference:SL2.40ch02 gene_region:45681209-45686565 transcript_region:SL2.40ch02:45681209..45686565- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013422g0022.1 protein AED:0.11 eAED:0.12 QI:0|0.63|0.5|0.91|0.63|0.58|12|0|825; (*GB) gi|225451827|ref|XP_002278111.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242960 [Vitis vinifera];; (*TAIR) AT5G38880.1 (e_value=0.0) | Symbols: | unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr5:15563621-15568804 REVERSE LENGTH=796;; (*ITAG) Solyc03g046590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:17160415-17182028 transcript_region:SL2.40ch03:17160415..17182028- functional_description:"Genomic DNA chromosome 5 TAC clone K15E6 (AHRD V1 ***- Q9FMB4_ARATH)"; NbS00013422g0028.1 protein AED:0.28 eAED:0.28 QI:0|0.54|0.58|0.66|0.90|0.83|12|509|476; (*GB) gi|356573623|ref|XP_003554957.1| (e_value=0.0) PREDICTED: probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9LFU5|TRM1_ARATH (e_value=0.0) Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3;; (*TAIR) AT5G15810.1 (e_value=0.0) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691;; (*ITAG) Solyc03g070400.1.1 (e_value=5e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:39178389-39180957 transcript_region:SL2.40ch03:39178389..39180957- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- C0HB58_SALSA); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00013422g0026.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0|2|0|298; (*GB) gi|255569926|ref|XP_002525926.1| (e_value=3e-41) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G15780.1 (e_value=5e-28) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:5144898-5146297 REVERSE LENGTH=401;; (*ITAG) Solyc02g089250.2.1 (e_value=2e-62) genomic_reference:SL2.40ch02 gene_region:45695219-45697076 transcript_region:SL2.40ch02:45695219..45697076+ functional_description:"Pollen Ole e 1 allergen and extensin (AHRD V1 *-*- Q2HSE9_MEDTR); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00000860g0011.1 protein AED:0.24 eAED:0.24 QI:232|0.76|0.71|1|1|1|14|0|589; (*GB) gi|224104817|ref|XP_002313577.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5I0I8|NOC4L_RAT (e_value=2e-54) Nucleolar complex protein 4 homolog OS=Rattus norvegicus GN=Noc4l PE=2 SV=1;; (*TAIR) AT2G17250.1 (e_value=0.0) | Symbols: EMB2762 | CCAAT-binding factor | chr2:7499573-7502957 FORWARD LENGTH=577;; (*ITAG) Solyc10g074560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57440595-57449785 transcript_region:SL2.40ch10:57440595..57449785+ functional_description:"Nucleolar complex protein 4 homolog (AHRD V1 *--- D3PJK6_9MAXI); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; NbS00000860g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.77|1|0.62|0.55|9|481|544; (*GB) gi|306448597|gb|ADM88045.1| (e_value=0.0) CDPK11 [Nicotiana tabacum];; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=0.0) Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1;; (*TAIR) AT2G17290.1 (e_value=0.0) | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent protein kinase family protein | chr2:7517005-7519239 FORWARD LENGTH=544;; (*ITAG) Solyc10g074570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57454225-57458658 transcript_region:SL2.40ch10:57454225..57458658+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 6 (AHRD V1 **** B9MZ11_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000860g0010.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|0.66|1|1|3|0|309; (*GB) gi|225428324|ref|XP_002283038.1| (e_value=3e-73) PREDICTED: uncharacterized protein LOC100248592 [Vitis vinifera];; (*TAIR) AT4G38225.2 (e_value=8e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17927230-17928274 FORWARD LENGTH=308;; (*ITAG) Solyc10g074580.1.1 (e_value=5e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57461549-57464651 transcript_region:SL2.40ch10:57461549..57464651- go_terms:GO:0016020 functional_description:"Aminoacylase ACY1 and related metalloexopeptidases (ISS) (AHRD V1 *-*- Q00SR9_OSTTA)"; GO:0016020 NbS00008167g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|94502669|ref|YP_588424.1| (e_value=3e-23) hypothetical protein ZeamMp180 [Zea mays subsp. mays];; (*ITAG) Solyc11g056320.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43097712-43098062 transcript_region:SL2.40ch11:43097712..43098062- functional_description:"Unknown Protein (AHRD V1)"; NbS00053492g0005.1 protein AED:0.25 eAED:0.41 QI:0|0|0|0.5|0|0|2|12|162; (*ITAG) Solyc08g061910.2.1 (e_value=3e-17) genomic_reference:SL2.40ch08 gene_region:47084632-47086761 transcript_region:SL2.40ch08:47084632..47086761+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028901g0010.1 protein AED:0.26 eAED:0.26 QI:288|0.66|0.71|1|0.5|0.57|7|114|404; (*GB) gi|356536459|ref|XP_003536755.1| (e_value=7e-158) PREDICTED: calumenin-like [Glycine max];; (*SWP) sp|Q28BT4|CALU_XENTR (e_value=5e-12) Calumenin OS=Xenopus tropicalis GN=calu PE=2 SV=1;; (*TAIR) AT5G08580.1 (e_value=2e-147) | Symbols: | Calcium-binding EF hand family protein | chr5:2780976-2782961 REVERSE LENGTH=391;; (*ITAG) Solyc00g008680.2.1 (e_value=3e-172) genomic_reference:SL2.40ch00 gene_region:8473134-8491476 transcript_region:SL2.40ch00:8473134..8491476+ go_terms:GO:0005509 functional_description:"Calcium binding protein-like (AHRD V1 *--- Q656S9_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028901g0002.1 protein AED:0.23 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|288|150; (*GB) gi|225463762|ref|XP_002267749.1| (e_value=4e-24) PREDICTED: uncharacterized protein LOC100249202 [Vitis vinifera];; (*TAIR) AT4G24370.1 (e_value=3e-17) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12611608-12612102 REVERSE LENGTH=164;; (*ITAG) Solyc01g089860.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:75357707-75358617 transcript_region:SL2.40ch01:75357707..75358617- functional_description:"Unknown Protein (AHRD V1)"; NbS00028901g0009.1 protein AED:0.27 eAED:0.27 QI:359|1|1|1|0.75|0.8|5|264|175; (*GB) gi|255547868|ref|XP_002514991.1| (e_value=3e-75) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O32107|YUID_BACSU (e_value=3e-23) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT1G24350.1 (e_value=1e-75) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr1:8639098-8640313 REVERSE LENGTH=168;; (*ITAG) Solyc04g024340.2.1 (e_value=5e-89) genomic_reference:SL2.40ch04 gene_region:11605227-11613735 transcript_region:SL2.40ch04:11605227..11613735- functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 ***- B6TSR4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00044207g0006.1 protein AED:0.19 eAED:0.22 QI:317|0.7|0.72|1|0.6|0.72|11|887|550; (*GB) gi|147799985|emb|CAN72662.1| (e_value=0.0) hypothetical protein VITISV_013890 [Vitis vinifera];; (*SWP) sp|Q7XI08|XB34_ORYSJ (e_value=1e-141) Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1;; (*TAIR) AT3G23280.1 (e_value=3e-134) | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis thaliana | chr3:8321588-8324109 FORWARD LENGTH=462;; (*ITAG) Solyc09g090160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65046640-65052937 transcript_region:SL2.40ch09:65046640..65052937+ go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 *--- B6U990_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00010906g0003.1 protein AED:0.16 eAED:0.16 QI:270|0.7|0.72|0.81|1|1|11|511|287; (*GB) gi|350538629|ref|NP_001234096.1| (e_value=2e-136) tobamovirus multiplication 1 homolog [Solanum lycopersicum];; (*TAIR) AT2G02180.1 (e_value=1e-117) | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303;; (*ITAG) Solyc04g008540.2.1 (e_value=4e-139) genomic_reference:SL2.40ch04 gene_region:2157991-2165032 transcript_region:SL2.40ch04:2157991..2165032- go_terms:GO:0005515,GO:0046790 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515,GO:0046790 NbS00010906g0006.1 protein AED:0.17 eAED:0.27 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|388493668|gb|AFK34900.1| (e_value=3e-21) unknown [Lotus japonicus];; (*SWP) sp|Q9FYK2|CML25_ARATH (e_value=6e-19) Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=5e-20) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc01g005370.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:259638-260564 transcript_region:SL2.40ch01:259638..260564+ go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00023692g0003.1 protein AED:0.01 eAED:0.01 QI:157|0.66|0.5|1|1|1|4|378|253; (*GB) gi|224106031|ref|XP_002314019.1| (e_value=2e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|P82277|RRP2_SPIOL (e_value=4e-96) 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1;; (*TAIR) AT3G52150.2 (e_value=2e-102) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19342074-19343090 FORWARD LENGTH=253;; (*ITAG) Solyc01g006940.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:1512591-1515492 transcript_region:SL2.40ch01:1512591..1515492+ go_terms:GO:0003743 functional_description:"Poly(U)-binding-splicing factor PUF60 (AHRD V1 *--* PUF60_BOVIN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003743 NbS00018424g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|635; (*GB) gi|224080986|ref|XP_002306254.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9SIT6|AB5G_ARATH (e_value=0.0) ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1;; (*TAIR) AT2G13610.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:5673827-5675776 REVERSE LENGTH=649;; (*ITAG) Solyc05g056470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64893438-64895282 transcript_region:SL2.40ch05:64893438..64895282- go_terms:GO:0017127 functional_description:"ABC transporter G family member 5 (AHRD V1 **** AB5G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00036003g0009.1 protein AED:0.06 eAED:0.09 QI:280|1|0.75|1|0.33|0.25|4|0|1440; (*GB) gi|224072140|ref|XP_002303631.1| (e_value=2e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41790.1 (e_value=4e-36) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc08g082010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62095443-62099923 transcript_region:SL2.40ch08:62095443..62099923+ go_terms:GO:0005515 functional_description:"Myosin heavy chain-like protein (AHRD V1 *-*- Q9FJ35_ARATH); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0005515 NbS00036003g0011.1 protein AED:0.12 eAED:0.12 QI:170|0.77|0.7|1|0.88|0.8|10|517|409; (*GB) gi|255537727|ref|XP_002509930.1| (e_value=0.0) Grave disease carrier protein, putative [Ricinus communis];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=4e-68) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT4G01100.1 (e_value=0.0) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=352;; (*ITAG) Solyc08g082020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62100535-62107680 transcript_region:SL2.40ch08:62100535..62107680- go_terms:GO:0015228 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015228 NbS00036003g0010.1 protein AED:0.68 eAED:0.70 QI:0|0|0.25|0.75|0.33|0.5|4|0|148; (*ITAG) Solyc08g082000.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:62081443-62086358 transcript_region:SL2.40ch08:62081443..62086358- functional_description:"Genomic DNA chromosome 5 TAC clone K19E1 (AHRD V1 *-*- Q9FK19_ARATH)"; NbS00020944g0020.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|0|154; (*GB) gi|224098730|ref|XP_002311246.1| (e_value=3e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=2e-67) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=2e-68) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc06g082310.2.1 (e_value=1e-72) genomic_reference:SL2.40ch06 gene_region:44463336-44464540 transcript_region:SL2.40ch06:44463336..44464540- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00020944g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.87|1|0.71|0.62|8|1151|531; (*GB) gi|224055383|ref|XP_002298497.1| (e_value=2e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q61545|EWS_MOUSE (e_value=2e-11) RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2;; (*TAIR) AT5G58470.2 (e_value=4e-53) | Symbols: TAF15b | TBP-associated factor 15B | chr5:23638566-23640854 REVERSE LENGTH=422;; (*ITAG) Solyc06g082220.2.1 (e_value=6e-83) genomic_reference:SL2.40ch06 gene_region:44426967-44431355 transcript_region:SL2.40ch06:44426967..44431355+ go_terms:GO:0003676,GO:0000166 functional_description:"HIV-1 Tat specific factor 1 (Fragment) (AHRD V1 *--- Q5H918_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00020944g0018.1 protein AED:0.21 eAED:0.21 QI:234|1|1|1|0.75|0.8|5|570|252; (*GB) gi|225434492|ref|XP_002275283.1| (e_value=3e-100) PREDICTED: gamma-interferon-inducible lysosomal thiol reductase isoform 2 [Vitis vinifera];; (*SWP) sp|P13284|GILT_HUMAN (e_value=3e-27) Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3;; (*TAIR) AT1G07080.1 (e_value=5e-93) | Symbols: | Thioredoxin superfamily protein | chr1:2170069-2171861 FORWARD LENGTH=265;; (*ITAG) Solyc06g007340.2.1 (e_value=8e-152) genomic_reference:SL2.40ch06 gene_region:1357680-1363111 transcript_region:SL2.40ch06:1357680..1363111- go_terms:GO:0015036 functional_description:"Gamma-interferon-inducible lysosomal thiol reductase (AHRD V1 ***- B6U3P7_MAIZE); contains Interpro domain(s) IPR004911 Gamma interferon inducible lysosomal thiol reductase GILT "; GO:0015036 NbS00020944g0011.1 protein AED:0.08 eAED:0.21 QI:0|0|0|1|1|1|2|0|375; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=7e-21) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*TAIR) AT5G09530.1 (e_value=2e-19) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g038250.1.1 (e_value=8e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34782096-34783189 transcript_region:SL2.40ch12:34782096..34783189+ functional_description:"Extensin-like protein Ext1 (AHRD V1 **-- Q8VWM5_SOLLC)"; NbS00020944g0021.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|62 NbS00020944g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.2|0.8|1|1|5|0|288; (*GB) gi|82400118|gb|ABB72798.1| (e_value=1e-168) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=4e-170) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=7e-165) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc02g070350.2.1 (e_value=1e-172) genomic_reference:SL2.40ch02 gene_region:34687926-34690148 transcript_region:SL2.40ch02:34687926..34690148+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00000570g0013.1 protein AED:0.01 eAED:0.01 QI:138|1|1|1|1|1|3|220|210; (*GB) gi|225454276|ref|XP_002275895.1| (e_value=3e-74) PREDICTED: uncharacterized protein LOC100256823 [Vitis vinifera];; (*TAIR) AT2G46000.1 (e_value=5e-60) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208;; (*ITAG) Solyc10g012400.2.1 (e_value=5e-106) genomic_reference:SL2.40ch10 gene_region:5079720-5081923 transcript_region:SL2.40ch10:5079720..5081923+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000570g0010.1 protein AED:0.15 eAED:0.15 QI:322|1|1|1|0|1|2|348|320; (*GB) gi|359489625|ref|XP_002275132.2| (e_value=1e-112) PREDICTED: uncharacterized protein LOC100244782 [Vitis vinifera];; (*TAIR) AT2G45980.1 (e_value=8e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18917680-18918569 REVERSE LENGTH=256;; (*ITAG) Solyc01g094770.2.1 (e_value=7e-94) genomic_reference:SL2.40ch01 gene_region:77943220-77947201 transcript_region:SL2.40ch01:77943220..77947201- functional_description:"Unknown Protein (AHRD V1)"; NbS00000570g0011.1 protein AED:0.26 eAED:0.26 QI:90|1|0.88|1|0.87|0.88|9|0|268; (*GB) gi|255541628|ref|XP_002511878.1| (e_value=3e-169) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45990.2 (e_value=6e-162) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr2:18919402-18921043 FORWARD LENGTH=268;; (*ITAG) Solyc10g012410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5081971-5084911 transcript_region:SL2.40ch10:5081971..5084911- functional_description:"HAD superfamily hydrolase (AHRD V1 ***- B5IPP9_9CHRO)"; NbS00000570g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.76|0.92|0.83|0.76|13|590|426; (*GB) gi|356520402|ref|XP_003528851.1| (e_value=3e-162) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*TAIR) AT1G63690.1 (e_value=7e-140) | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540;; (*ITAG) Solyc10g012430.2.1 (e_value=3e-164) genomic_reference:SL2.40ch10 gene_region:5095597-5108835 transcript_region:SL2.40ch10:5095597..5108835- go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00001226g0003.1 protein AED:0.11 eAED:0.11 QI:23|0.66|0.75|1|1|1|4|0|487; (*GB) gi|356509549|ref|XP_003523510.1| (e_value=0.0) PREDICTED: endoglucanase 24-like [Glycine max];; (*SWP) sp|Q93YQ7|GUN24_ARATH (e_value=0.0) Endoglucanase 24 OS=Arabidopsis thaliana GN=At4g39010 PE=2 SV=1;; (*TAIR) AT4G39010.1 (e_value=0.0) | Symbols: AtGH9B18, GH9B18 | glycosyl hydrolase 9B18 | chr4:18176162-18179102 REVERSE LENGTH=497;; (*ITAG) Solyc01g110340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88831044-88837188 transcript_region:SL2.40ch01:88831044..88837188+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00011188g0004.1 protein AED:0.53 eAED:0.76 QI:0|0|0|0.25|0.66|0.75|4|0|167 NbS00010102g0010.1 protein AED:0.07 eAED:0.07 QI:268|0.87|0.8|1|0.87|0.88|25|0|1098; (*GB) gi|359484435|ref|XP_002279485.2| (e_value=0.0) PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera];; (*SWP) sp|Q6PD62|CTR9_HUMAN (e_value=2e-123) RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1;; (*TAIR) AT2G06210.1 (e_value=0.0) | Symbols: ELF8, VIP6 | binding | chr2:2429108-2436588 REVERSE LENGTH=1091;; (*ITAG) Solyc07g041510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:50732373-50744523 transcript_region:SL2.40ch07:50732373..50744523+ go_terms:GO:0042169 functional_description:"SH2 domain binding protein (Fragment) (AHRD V1 *--* D0UMV9_SCUCO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0042169 NbS00010102g0006.1 protein AED:0.18 eAED:0.18 QI:66|0.6|0.5|1|1|1|6|0|577; (*GB) gi|225429670|ref|XP_002281332.1| (e_value=4e-166) PREDICTED: secologanin synthase [Vitis vinifera];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=2e-128) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14640.1 (e_value=1e-143) | Symbols: CYP72A10 | cytochrome P450, family 72, subfamily A, polypeptide 10 | chr3:4919856-4921787 FORWARD LENGTH=514;; (*ITAG) Solyc07g041500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:50636454-50638935 transcript_region:SL2.40ch07:50636454..50638935+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00029581g0007.1 protein AED:0.06 eAED:0.06 QI:198|1|1|1|0.66|0.5|4|197|422; (*GB) gi|255546959|ref|XP_002514537.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-150) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=7e-152) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g005900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:583790-585430 transcript_region:SL2.40ch04:583790..585430+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00029581g0002.1 protein AED:0.15 eAED:0.15 QI:275|1|1|1|0.9|0.81|11|256|621; (*GB) gi|224099221|ref|XP_002311408.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY65|NIK2_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1;; (*TAIR) AT3G25560.1 (e_value=0.0) | Symbols: NIK2 | NSP-interacting kinase 2 | chr3:9279682-9282560 REVERSE LENGTH=635;; (*ITAG) Solyc04g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:585686-590298 transcript_region:SL2.40ch04:585686..590298- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006595g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|225458432|ref|XP_002283812.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100245429 [Vitis vinifera];; (*TAIR) AT1G48460.1 (e_value=2e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911469-17913149 FORWARD LENGTH=340;; (*ITAG) Solyc04g079740.2.1 (e_value=3e-48) genomic_reference:SL2.40ch04 gene_region:61693248-61696082 transcript_region:SL2.40ch04:61693248..61696082+ functional_description:"Os01g0704200 protein (Fragment) (AHRD V1 *-*- Q0JK10_ORYSJ)"; NbS00006595g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|2407275|gb|AAB70540.1| (e_value=7e-15) lipid transfer protein LPT III [Oryza sativa Indica Group];; (*SWP) sp|Q0IQK9|NLTP1_ORYSJ (e_value=2e-15) Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1;; (*TAIR) AT2G15050.2 (e_value=2e-16) | Symbols: LTP, LTP7 | lipid transfer protein | chr2:6518888-6519888 FORWARD LENGTH=115;; (*ITAG) Solyc01g090350.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:75816344-75817104 transcript_region:SL2.40ch01:75816344..75817104- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00017115g0006.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|661; (*GB) gi|297745446|emb|CBI40526.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GZ42|ATX5_ARATH (e_value=0.0) Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1;; (*TAIR) AT3G61740.2 (e_value=0.0) | Symbols: SDG14, ATX3 | SET domain protein 14 | chr3:22851133-22856548 REVERSE LENGTH=982;; (*ITAG) Solyc03g112690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57113087-57115021 transcript_region:SL2.40ch03:57113087..57115021+ go_terms:GO:0008270 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B3LSN4_YEAS1); contains Interpro domain(s) IPR001214 SET "; GO:0008270 NbS00017115g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|976; (*GB) gi|225456971|ref|XP_002278672.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=0.0) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc03g112680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57106233-57109157 transcript_region:SL2.40ch03:57106233..57109157+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00017115g0025.1 protein AED:0.13 eAED:0.15 QI:37|1|0.77|1|1|0.88|9|0|1612; (*GB) gi|224135855|ref|XP_002322177.1| (e_value=6e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SB63|MOS1_ARATH (e_value=1e-66) Protein MODIFIER OF SNC1 1 OS=Arabidopsis thaliana GN=MOS1 PE=1 SV=2;; (*TAIR) AT4G24680.1 (e_value=1e-64) | Symbols: MOS1 | modifier of snc1 | chr4:12733425-12739737 FORWARD LENGTH=1427;; (*ITAG) Solyc03g112660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57083095-57092849 transcript_region:SL2.40ch03:57083095..57092849+ functional_description:"MOS1 (AHRD V1 *-*- D9IVG9_ARATH); contains Interpro domain(s) IPR009738 BAT2, N-terminal "; NbS00017115g0019.1 protein AED:0.16 eAED:0.16 QI:323|1|0.5|1|1|1|2|0|223; (*GB) gi|297733745|emb|CBI14992.3| (e_value=5e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y5Z4|HEBP2_HUMAN (e_value=9e-17) Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1;; (*TAIR) AT1G17100.1 (e_value=1e-42) | Symbols: | SOUL heme-binding family protein | chr1:5844766-5845539 FORWARD LENGTH=232;; (*ITAG) Solyc03g112650.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:57076098-57078780 transcript_region:SL2.40ch03:57076098..57078780+ go_terms:GO:0020037 functional_description:"Soul heme-binding family protein (AHRD V1 **** D7KEL8_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0020037 NbS00017115g0018.1 protein AED:0.23 eAED:0.23 QI:220|1|0.83|1|1|1|6|397|264; (*GB) gi|359491329|ref|XP_003634267.1| (e_value=7e-126) PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera];; (*SWP) sp|Q9CWP6|MSPD2_MOUSE (e_value=2e-18) Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2;; (*TAIR) AT5G63060.1 (e_value=1e-118) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr5:25295082-25296714 REVERSE LENGTH=263;; (*ITAG) Solyc03g112640.2.1 (e_value=4e-167) genomic_reference:SL2.40ch03 gene_region:57071472-57075375 transcript_region:SL2.40ch03:57071472..57075375+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein (AHRD V1 **-- B6UD95_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00017115g0017.1 protein AED:0.24 eAED:0.24 QI:236|1|0.90|1|0.9|0.90|11|81|467; (*GB) gi|255572355|ref|XP_002527116.1| (e_value=4e-123) mRNA splicing factor, putative [Ricinus communis];; (*SWP) sp|Q8BIQ5|CSTF2_MOUSE (e_value=8e-40) Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2;; (*TAIR) AT1G71800.1 (e_value=1e-103) | Symbols: CSTF64 | cleavage stimulating factor 64 | chr1:26999606-27001850 FORWARD LENGTH=461;; (*ITAG) Solyc02g069160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33681620-33689059 transcript_region:SL2.40ch02:33681620..33689059+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q16HY2_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00017115g0026.1 protein AED:0.29 eAED:0.30 QI:0|0.5|0.2|0.6|0.5|0.8|5|0|350; (*GB) gi|225466700|ref|XP_002263464.1| (e_value=3e-135) PREDICTED: uncharacterized protein LOC100265372 [Vitis vinifera];; (*TAIR) AT5G63050.1 (e_value=3e-109) | Symbols: EMB2759 | embryo defective 2759 | chr5:25293109-25294799 FORWARD LENGTH=345;; (*ITAG) Solyc03g112670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57094988-57100243 transcript_region:SL2.40ch03:57094988..57100243+ functional_description:"Genomic DNA chromosome 5 P1 clone MDC12 (AHRD V1 **-- Q9FML8_ARATH)"; NbC23968947g0001.1 protein AED:0.02 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|149927844|ref|ZP_01916095.1| (e_value=1e-50) RelA/SpoT protein [Limnobacter sp. MED105];; (*SWP) sp|P44644|RELA_HAEIN (e_value=1e-29) GTP pyrophosphokinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=relA PE=3 SV=1;; (*TAIR) AT3G14050.1 (e_value=2e-25) | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog 2 | chr3:4650902-4653514 REVERSE LENGTH=709;; (*ITAG) Solyc03g096900.2.1 (e_value=6e-25) genomic_reference:SL2.40ch03 gene_region:52711245-52720659 transcript_region:SL2.40ch03:52711245..52720659- go_terms:GO:0015969,GO:0003824 functional_description:"GTP pyrophosphokinase (AHRD V1 *--- A4AJW6_9ACTN); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0003824 NbS00031229g0003.1 protein AED:0.31 eAED:0.35 QI:319|0.81|0.83|1|0.81|0.75|12|0|513; (*GB) gi|356516021|ref|XP_003526695.1| (e_value=0.0) PREDICTED: polypyrimidine tract-binding protein homolog 2-like [Glycine max];; (*SWP) sp|Q9FGL9|PTBP2_ARATH (e_value=0.0) Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1;; (*TAIR) AT5G53180.1 (e_value=0.0) | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429;; (*ITAG) Solyc03g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1880831-1890543 transcript_region:SL2.40ch03:1880831..1890543+ go_terms:GO:0005515 functional_description:"Polypyrimidine tract-binding protein 1-like (AHRD V1 **** Q5ZBG2_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00006083g0007.1 protein AED:0.21 eAED:0.33 QI:0|0|0|0.8|0.75|0.6|5|0|310; (*GB) gi|388514791|gb|AFK45457.1| (e_value=1e-85) unknown [Lotus japonicus];; (*SWP) sp|Q6NM73|CRR3_ARATH (e_value=7e-76) Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1;; (*TAIR) AT1G04520.1 (e_value=5e-77) | Symbols: PDLP2 | plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307;; (*ITAG) Solyc03g005690.2.1 (e_value=2e-113) genomic_reference:SL2.40ch03 gene_region:492526-495987 transcript_region:SL2.40ch03:492526..495987+ functional_description:"Cysteine-rich repeat secretory protein 3 (AHRD V1 ***- CRR3_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00013628g0001.1 protein AED:0.51 eAED:0.51 QI:36|1|0.5|1|1|1|2|22|29 NbS00027044g0002.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|437; (*GB) gi|255541040|ref|XP_002511584.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT2G44830.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:18490398-18492779 FORWARD LENGTH=765;; (*ITAG) Solyc01g090240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75673551-75676761 transcript_region:SL2.40ch01:75673551..75676761+ go_terms:GO:0005515 functional_description:"Protein kinase 5 (AHRD V1 ***- Q8W4K8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00027044g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|4|339|851; (*GB) gi|255541042|ref|XP_002511585.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60320.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr3:22292073-22295228 REVERSE LENGTH=796;; (*ITAG) Solyc01g090270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75692316-75698111 transcript_region:SL2.40ch01:75692316..75698111- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00027044g0014.1 protein AED:0.31 eAED:0.31 QI:0|0.76|0.78|1|0.69|0.71|14|580|464; (*GB) gi|255541044|ref|XP_002511586.1| (e_value=2e-167) leucine carboxyl methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8BYR1|LCMT2_MOUSE (e_value=3e-44) Leucine carboxyl methyltransferase 2 OS=Mus musculus GN=Lcmt2 PE=2 SV=4;; (*TAIR) AT1G02100.2 (e_value=2e-150) | Symbols: | Leucine carboxyl methyltransferase | chr1:389876-392293 FORWARD LENGTH=306;; (*ITAG) Solyc01g090280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75702635-75713819 transcript_region:SL2.40ch01:75702635..75713819- go_terms:GO:0003880 functional_description:"Leucine carboxyl methyltransferase family protein (AHRD V1 **** D7KP37_ARALY); contains Interpro domain(s) IPR016651 Leucine carboxyl methyltransferase, LCTM1 1 "; GO:0003880 NbS00007901g0002.1 protein AED:0.21 eAED:0.21 QI:42|-1|0|1|-1|1|1|0|90; (*GB) gi|255547049|ref|XP_002514582.1| (e_value=4e-24) inositol or phosphatidylinositol kinase, putative [Ricinus communis];; (*TAIR) AT2G03890.2 (e_value=5e-19) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=530;; (*ITAG) Solyc04g005270.1.1 (e_value=3e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:196342-198264 transcript_region:SL2.40ch04:196342..198264- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00018150g0001.1 protein AED:0.32 eAED:0.32 QI:360|0.85|0.86|1|1|1|22|0|734; (*GB) gi|222625611|gb|EEE59743.1| (e_value=0.0) hypothetical protein OsJ_12209 [Oryza sativa Japonica Group];; (*SWP) sp|P92943|CLCD_ARATH (e_value=0.0) Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2;; (*TAIR) AT5G26240.1 (e_value=0.0) | Symbols: CLC-D, ATCLC-D | chloride channel D | chr5:9189622-9194347 FORWARD LENGTH=792;; (*ITAG) Solyc09g075800.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62913980-62927024 transcript_region:SL2.40ch09:62913980..62927024+ go_terms:GO:0005515,GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005515,GO:0005247 NbS00018150g0011.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.62|1|0.85|0.75|8|0|461; (*GB) gi|356557899|ref|XP_003547247.1| (e_value=3e-170) PREDICTED: beta-glucosidase 47-like [Glycine max];; (*SWP) sp|Q9SVS1|BGL47_ARATH (e_value=2e-150) Beta-glucosidase 47 OS=Arabidopsis thaliana GN=BGLU47 PE=2 SV=2;; (*TAIR) AT4G21760.1 (e_value=1e-151) | Symbols: BGLU47 | beta-glucosidase 47 | chr4:11561229-11563871 FORWARD LENGTH=535;; (*ITAG) Solyc02g080300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39136416-39140040 transcript_region:SL2.40ch02:39136416..39140040+ go_terms:GO:0004338,GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338,GO:0047782 NbS00018150g0010.1 protein AED:0.24 eAED:0.24 QI:149|1|1|1|1|1|2|340|182; (*GB) gi|356534224|ref|XP_003535657.1| (e_value=6e-59) PREDICTED: mavicyanin-like [Glycine max];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=5e-36) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=2e-58) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g075810.2.1 (e_value=1e-80) genomic_reference:SL2.40ch09 gene_region:62927206-62929236 transcript_region:SL2.40ch09:62927206..62929236- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00046566g0006.1 protein AED:0.18 eAED:0.26 QI:708|0.63|0.75|1|0.54|0.33|12|378|412; (*GB) gi|13536981|dbj|BAB40709.1| (e_value=0.0) BY-2 kinesin-like protein 5 [Nicotiana tabacum];; (*SWP) sp|Q9BVG8|KIFC3_HUMAN (e_value=7e-22) Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4;; (*TAIR) AT5G27950.1 (e_value=6e-126) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9984774-9987493 FORWARD LENGTH=625;; (*ITAG) Solyc01g098080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80437575-80440877 transcript_region:SL2.40ch01:80437575..80440877- go_terms:GO:0007018 functional_description:"BY-inesin-like protein 5 (AHRD V1 ***- Q9AVP5_TOBAC); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00008589g0007.1 protein AED:0.06 eAED:0.06 QI:50|1|1|1|1|1|6|586|483; (*GB) gi|224093350|ref|XP_002309893.1| (e_value=6e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT1G43770.2 (e_value=1e-27) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:16548509-16550257 FORWARD LENGTH=431;; (*ITAG) Solyc11g005740.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:585204-589027 transcript_region:SL2.40ch11:585204..589027- go_terms:GO:0008270 functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q53MN0_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00008589g0008.1 protein AED:0.06 eAED:0.06 QI:1010|1|1|1|1|1|2|158|255; (*GB) gi|225431519|ref|XP_002275192.1| (e_value=2e-143) PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 [Vitis vinifera];; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=5e-136) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=4e-137) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc11g005750.1.1 (e_value=1e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:591151-592949 transcript_region:SL2.40ch11:591151..592949- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00029513g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.72|0.91|1|0.45|0.58|12|530|485; (*GB) gi|359484681|ref|XP_002262830.2| (e_value=2e-169) PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Vitis vinifera];; (*TAIR) AT1G15740.1 (e_value=9e-148) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc12g009870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3046369-3051336 transcript_region:SL2.40ch12:3046369..3051336+ functional_description:"Leucine-rich repeat-like protein (AHRD V1 ***- Q6K620_ORYSJ); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00051557g0007.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.6|1|1|0.8|5|0|1253; (*GB) gi|255543813|ref|XP_002512969.1| (e_value=0.0) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00051557g0008.1 protein AED:0.44 eAED:0.44 QI:101|0.5|1|1|0.5|0.33|3|160|79 NbS00055649g0004.1 protein AED:0.26 eAED:0.27 QI:237|0.5|0.42|1|0.5|0.42|7|0|614; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=0.0) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|Q8LQJ8|FTSH5_ORYSJ (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1;; (*TAIR) AT2G26140.1 (e_value=0.0) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc11g069950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51629743-51639001 transcript_region:SL2.40ch11:51629743..51639001+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00016130g0005.1 protein AED:0.28 eAED:0.29 QI:125|0.5|0.4|1|0.25|0.4|5|0|373; (*GB) gi|296083497|emb|CBI23466.3| (e_value=5e-121) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=2e-42) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G16745.1 (e_value=7e-98) | Symbols: | Exostosin family protein | chr4:9412185-9414053 FORWARD LENGTH=542;; (*ITAG) Solyc08g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1858666-1861740 transcript_region:SL2.40ch08:1858666..1861740- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7MCC1_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00024742g0001.1 protein AED:0.26 eAED:0.26 QI:286|0.83|0.85|1|0.83|0.71|7|471|416; (*GB) gi|315258227|gb|ADT91692.1| (e_value=0.0) mitogen-activated protein kinase 4 [Nicotiana attenuata];; (*SWP) sp|Q39024|MPK4_ARATH (e_value=0.0) Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2;; (*TAIR) AT4G01370.1 (e_value=0.0) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc01g094960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78118441-78124258 transcript_region:SL2.40ch01:78118441..78124258+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0016908 NbS00024742g0006.1 protein AED:0.07 eAED:0.10 QI:0|1|0.6|1|1|1|5|0|519; (*GB) gi|356520375|ref|XP_003528838.1| (e_value=0.0) PREDICTED: probable polygalacturonase-like [Glycine max];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=0.0) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00033235g0007.1 protein AED:0.18 eAED:0.18 QI:213|1|1|1|0.33|0.25|4|442|154; (*GB) gi|225441700|ref|XP_002282874.1| (e_value=2e-45) PREDICTED: protein cornichon homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9C7D7|CNIH1_ARATH (e_value=3e-36) Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1;; (*TAIR) AT3G12180.1 (e_value=3e-37) | Symbols: | Cornichon family protein | chr3:3883464-3884570 FORWARD LENGTH=146;; (*ITAG) Solyc03g063970.2.1 (e_value=6e-70) genomic_reference:SL2.40ch03 gene_region:34545550-34556117 transcript_region:SL2.40ch03:34545550..34556117- go_terms:GO:0016020 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 *--- B6T2L9_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016020 NbS00033235g0006.1 protein AED:0.23 eAED:0.25 QI:27|0.81|0.91|1|0.81|0.83|12|291|467; (*GB) gi|297739715|emb|CBI29897.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0K3H2|MURD_THEPX (e_value=6e-47) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thermoanaerobacter sp. (strain X514) GN=murD PE=3 SV=1;; (*ITAG) Solyc05g012800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:5965205-5966698 transcript_region:SL2.40ch05:5965205..5966698- go_terms:GO:0005515 functional_description:"UDP-N-acetylmuramoylalanine--D-glutamate ligase (AHRD V1 ***- B8J8E6_ANAD2); contains Interpro domain(s) IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase "; GO:0005515 NbS00014904g0107.1 protein AED:0.09 eAED:0.09 QI:271|0.9|0.81|1|1|1|11|0|823 NbS00014904g0104.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|1|1|6|0|120 NbS00044180g0005.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|1|3|0|607; (*GB) gi|255549218|ref|XP_002515663.1| (e_value=9e-173) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G49590.1 (e_value=2e-105) | Symbols: | Autophagy-related protein 13 | chr3:18377892-18380104 FORWARD LENGTH=603;; (*ITAG) Solyc03g096790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52577946-52584548 transcript_region:SL2.40ch03:52577946..52584548+ functional_description:"Autophagy-related protein 13 (AHRD V1 *-*- C1GRW0_PARBA); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 "; NbS00002940g0011.1 protein AED:0.21 eAED:0.21 QI:5|0.75|0.66|1|0.75|0.66|9|0|453; (*GB) gi|20873461|emb|CAD12373.1| (e_value=0.0) glutamate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|P93541|DHE3_SOLLC (e_value=0.0) Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1 PE=2 SV=1;; (*TAIR) AT5G18170.1 (e_value=0.0) | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411;; (*ITAG) Solyc10g078550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59665351-59668393 transcript_region:SL2.40ch10:59665351..59668393- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q8L6A0_TOBAC); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00002940g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|151; (*GB) gi|147816349|emb|CAN59732.1| (e_value=5e-56) hypothetical protein VITISV_003913 [Vitis vinifera];; (*SWP) sp|Q8VZT0|NLAL1_ARATH (e_value=7e-54) Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1;; (*TAIR) AT3G03920.1 (e_value=5e-55) | Symbols: | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | chr3:1009123-1010379 REVERSE LENGTH=202;; (*ITAG) Solyc10g078540.1.1 (e_value=8e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59662818-59664625 transcript_region:SL2.40ch10:59662818..59664625+ go_terms:GO:0031429 functional_description:"H/ACA ribonucleoprotein complex subunit 1-like protein 1 (AHRD V1 *-*- B6TYV7_MAIZE); contains Interpro domain(s) IPR007504 Gar1 protein RNA-binding region "; GO:0031429 NbS00027532g0002.1 protein AED:0.09 eAED:0.12 QI:208|0|0.25|1|0|0.25|4|0|348; (*GB) gi|225449613|ref|XP_002279396.1| (e_value=5e-129) PREDICTED: putative nuclease HARBI1 [Vitis vinifera];; (*TAIR) AT3G55350.1 (e_value=2e-97) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406;; (*ITAG) Solyc05g054670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63680163-63685587 transcript_region:SL2.40ch05:63680163..63685587- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 **-- Q0D898_ORYSJ)"; NbS00025773g0004.1 protein AED:0.21 eAED:0.24 QI:0|0.83|0.78|1|1|1|19|297|714; (*GB) gi|225457017|ref|XP_002279079.1| (e_value=0.0) PREDICTED: pantothenate kinase 2-like [Vitis vinifera];; (*SWP) sp|Q8L5Y9|PANK2_ARATH (e_value=0.0) Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2;; (*TAIR) AT4G32180.1 (e_value=0.0) | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 | chr4:15537724-15543715 REVERSE LENGTH=901;; (*ITAG) Solyc03g112910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57242394-57257123 transcript_region:SL2.40ch03:57242394..57257123+ go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 *-** C1FDA4_9CHLO); contains Interpro domain(s) IPR015844 Pantothenate kinase, acetyl-CoA regulated, two-domain type "; GO:0005515,GO:0004594 NbS00021054g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|6|0|234; (*GB) gi|224112026|ref|XP_002316057.1| (e_value=3e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSM9|SCP33_ARATH (e_value=5e-43) Serine carboxypeptidase-like 33 OS=Arabidopsis thaliana GN=SCPL33 PE=2 SV=2;; (*TAIR) AT3G17180.1 (e_value=4e-44) | Symbols: scpl33 | serine carboxypeptidase-like 33 | chr3:5855861-5859157 REVERSE LENGTH=478;; (*ITAG) Solyc12g099160.1.1 (e_value=7e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64752122-64756526 transcript_region:SL2.40ch12:64752122..64756526+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 ***- B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00037476g0005.1 protein AED:0.23 eAED:0.26 QI:0|0.83|0.71|0.85|1|1|7|0|705; (*GB) gi|225425902|ref|XP_002271378.1| (e_value=0.0) PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera];; (*SWP) sp|O76094|SRP72_HUMAN (e_value=2e-77) Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72 PE=1 SV=3;; (*TAIR) AT1G67680.1 (e_value=0.0) | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664;; (*ITAG) Solyc11g062270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "; GO:0005047 NbS00039304g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|225427222|ref|XP_002278326.1| (e_value=1e-59) PREDICTED: uncharacterized protein LOC100267849 [Vitis vinifera];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=9e-20) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT4G17810.1 (e_value=3e-30) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:9906918-9907532 FORWARD LENGTH=204;; (*ITAG) Solyc06g061160.1.1 (e_value=3e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35555299-35555898 transcript_region:SL2.40ch06:35555299..35555898+ go_terms:GO:0003700 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-** D0UTY6_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00039304g0025.1 protein AED:0.23 eAED:0.23 QI:21|0.8|0.66|1|0.8|0.66|6|0|319; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=6e-68) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*TAIR) AT5G46640.1 (e_value=6e-50) | Symbols: | AT hook motif DNA-binding family protein | chr5:18924670-18926292 FORWARD LENGTH=386;; (*ITAG) Solyc08g077030.2.1 (e_value=4e-77) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00039304g0022.1 protein AED:0.32 eAED:0.32 QI:105|1|1|1|0.75|0.8|5|702|135; (*GB) gi|224138856|ref|XP_002326707.1| (e_value=1e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32370.4 (e_value=6e-32) | Symbols: TOM2B, TTM1 | tobamovirus multiplication 2B | chr1:11677005-11678032 FORWARD LENGTH=123;; (*ITAG) Solyc06g061050.2.1 (e_value=6e-47) genomic_reference:SL2.40ch06 gene_region:35475234-35481793 transcript_region:SL2.40ch06:35475234..35481793- functional_description:"TOM2B (AHRD V1 ***- B6TGV7_MAIZE)"; NbS00039304g0019.1 protein AED:0.34 eAED:0.34 QI:0|0.88|0.7|1|0.88|0.9|10|647|331; (*GB) gi|255557603|ref|XP_002519831.1| (e_value=0.0) clathrin coat associated protein ap-50, putative [Ricinus communis];; (*SWP) sp|P54672|AP2M_DICDI (e_value=4e-127) AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2;; (*TAIR) AT5G46630.1 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923252 FORWARD LENGTH=438;; (*ITAG) Solyc06g061150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35536609-35549278 transcript_region:SL2.40ch06:35536609..35549278+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00039304g0029.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|185; (*GB) gi|113205399|gb|AAU90302.2| (e_value=8e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc03g034210.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10174243-10178627 transcript_region:SL2.40ch03:10174243..10178627- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_HUMAN); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00039304g0027.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|188; (*GB) gi|332322086|emb|CCA65978.1| (e_value=4e-12) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc01g056950.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00030473g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|561; (*GB) gi|224136286|ref|XP_002322291.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50900.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:20705051-20706718 REVERSE LENGTH=555;; (*ITAG) Solyc03g097740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53530837-53532501 transcript_region:SL2.40ch03:53530837..53532501- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MQC3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00031807g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=1e-59) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=3e-58) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=3e-59) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=4e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00038509g0008.1 protein AED:0.09 eAED:0.09 QI:601|1|0.75|1|0.33|0.5|4|0|416; (*GB) gi|224139150|ref|XP_002326780.1| (e_value=3e-105) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45275.1 (e_value=5e-92) | Symbols: | Major facilitator superfamily protein | chr5:18334476-18337240 REVERSE LENGTH=570;; (*ITAG) Solyc01g081410.2.1 (e_value=5e-134) genomic_reference:SL2.40ch01 gene_region:73122465-73125023 transcript_region:SL2.40ch01:73122465..73125023- go_terms:GO:0009055 functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; GO:0009055 NbS00038509g0006.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.25|0.75|1|1|4|0|176; (*GB) gi|147774873|emb|CAN73443.1| (e_value=2e-26) hypothetical protein VITISV_020729 [Vitis vinifera];; (*SWP) sp|Q7XLP4|Y4869_ORYSJ (e_value=7e-18) B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3;; (*ITAG) Solyc01g081400.2.1 (e_value=4e-66) genomic_reference:SL2.40ch01 gene_region:73119945-73121166 transcript_region:SL2.40ch01:73119945..73121166+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os04g0386900 (AHRD V1 ***- Y4869_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00021572g0008.1 protein AED:0.00 eAED:0.00 QI:829|1|1|1|0.5|0.33|3|382|529; (*GB) gi|225457305|ref|XP_002281450.1| (e_value=5e-112) PREDICTED: uncharacterized protein LOC100263964 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=1e-27) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT1G26580.1 (e_value=7e-64) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493;; (*ITAG) Solyc06g069560.1.1 (e_value=2e-163) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:39701636-39702883 transcript_region:SL2.40ch06:39701636..39702883+ go_terms:GO:0003677 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00021572g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|7|222|736; (*GB) gi|255547253|ref|XP_002514684.1| (e_value=0.0) diacylglycerol kinase, theta, putative [Ricinus communis];; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G07920.1 (e_value=0.0) | Symbols: DGK1, ATDGK1 | diacylglycerol kinase1 | chr5:2525197-2528396 REVERSE LENGTH=728;; (*ITAG) Solyc12g039180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37986331-37993663 transcript_region:SL2.40ch12:37986331..37993663+ go_terms:GO:0005509 functional_description:"Diacylglycerol kinase 1 (AHRD V1 ***- A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0005509 NbS00021572g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.8|0.81|1|0.4|0.63|11|96|332; (*GB) gi|356516841|ref|XP_003527101.1| (e_value=1e-119) PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105-like isoform 1 [Glycine max];; (*SWP) sp|P0C895|Y2010_ARATH (e_value=2e-30) LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1;; (*TAIR) AT5G07910.1 (e_value=3e-99) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:2521937-2523769 REVERSE LENGTH=262;; (*ITAG) Solyc12g040320.1.1 (e_value=7e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:38767584-38778283 transcript_region:SL2.40ch12:38767584..38778283- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00021572g0107.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|0.66|1|4|0|393 NbS00021572g0108.1 protein AED:0.19 eAED:0.24 QI:0|0|0.5|1|1|0.5|2|120|68 NbS00021572g0106.1 protein AED:0.29 eAED:0.30 QI:150|0.33|0.25|1|0.66|0.5|4|0|576 NbS00000374g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|471; (*GB) gi|359491363|ref|XP_002265397.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g60960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FME4|PP438_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1;; (*TAIR) AT5G60960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24528423-24529988 REVERSE LENGTH=521;; (*ITAG) Solyc03g114920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58835298-58836866 transcript_region:SL2.40ch03:58835298..58836866- go_terms:GO:0016020 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016020 NbS00060054g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|353; (*GB) gi|359481956|ref|XP_002277851.2| (e_value=9e-97) PREDICTED: uncharacterized protein LOC100259589 [Vitis vinifera];; (*TAIR) AT3G10040.1 (e_value=3e-75) | Symbols: | sequence-specific DNA binding transcription factors | chr3:3096580-3097875 REVERSE LENGTH=431;; (*ITAG) Solyc09g008830.2.1 (e_value=7e-60) genomic_reference:SL2.40ch09 gene_region:2249828-2257471 transcript_region:SL2.40ch09:2249828..2257471+ functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00051947g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|359478402|ref|XP_002282983.2| (e_value=6e-170) PREDICTED: serine/threonine-protein kinase OXI1-like [Vitis vinifera];; (*SWP) sp|Q9LSF1|OXI1_ARATH (e_value=2e-92) Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1;; (*TAIR) AT3G20830.1 (e_value=2e-146) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr3:7285024-7286250 REVERSE LENGTH=408;; (*ITAG) Solyc11g061720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45340295-45341503 transcript_region:SL2.40ch11:45340295..45341503- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KZX1_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00054384g0003.1 protein AED:0.09 eAED:0.09 QI:185|0.66|0.85|1|1|1|7|426|358; (*GB) gi|1778145|gb|AAB40648.1| (e_value=0.0) phosphate/phosphoenolpyruvate translocator precursor [Nicotiana tabacum];; (*SWP) sp|Q8RXN3|PPT1_ARATH (e_value=5e-118) Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1;; (*TAIR) AT5G33320.1 (e_value=4e-119) | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/phosphate translocator-related | chr5:12588950-12591408 FORWARD LENGTH=408;; (*ITAG) Solyc03g112870.2.1 (e_value=1e-132) genomic_reference:SL2.40ch03 gene_region:57216669-57220808 transcript_region:SL2.40ch03:57216669..57220808+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6P/phosphate translocator (AHRD V1 **** Q9MSB4_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00054384g0006.1 protein AED:0.27 eAED:0.33 QI:0|0.66|0.5|1|1|1|4|0|347; (*GB) gi|147841524|emb|CAN75320.1| (e_value=1e-132) hypothetical protein VITISV_003762 [Vitis vinifera];; (*TAIR) AT1G10650.1 (e_value=3e-89) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:3524122-3525318 REVERSE LENGTH=339;; (*ITAG) Solyc03g112860.2.1 (e_value=8e-163) genomic_reference:SL2.40ch03 gene_region:57210203-57215470 transcript_region:SL2.40ch03:57210203..57215470+ functional_description:"S-ribonuclease binding protein SBP1 (Fragment) (AHRD V1 **-- Q9M5Q3_PETHY)"; NbS00016311g0007.1 protein AED:0.14 eAED:0.14 QI:452|1|1|1|0.62|0.66|9|102|345; (*GB) gi|255545652|ref|XP_002513886.1| (e_value=0.0) phosphoglycerate mutase, putative [Ricinus communis];; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=4e-101) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1;; (*TAIR) AT1G22170.1 (e_value=5e-175) | Symbols: | Phosphoglycerate mutase family protein | chr1:7826603-7828055 FORWARD LENGTH=334;; (*ITAG) Solyc04g072800.2.1 (e_value=8e-164) genomic_reference:SL2.40ch04 gene_region:57368160-57370526 transcript_region:SL2.40ch04:57368160..57370526+ go_terms:GO:0046538,GO:0019901 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 "; GO:0046538,GO:0019901 NbS00016311g0008.1 protein AED:0.21 eAED:0.21 QI:250|0.6|0.66|1|0.8|0.66|6|101|329; (*GB) gi|255545658|ref|XP_002513889.1| (e_value=3e-126) transporter, putative [Ricinus communis];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=6e-23) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G22180.2 (e_value=3e-104) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:7828434-7829745 REVERSE LENGTH=314;; (*ITAG) Solyc04g072810.2.1 (e_value=8e-166) genomic_reference:SL2.40ch04 gene_region:57370862-57376125 transcript_region:SL2.40ch04:57370862..57376125- go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00007060g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|3|0|119; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=5e-64) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=7e-58) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=5e-59) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc11g011500.1.1 (e_value=7e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4549309-4556010 transcript_region:SL2.40ch11:4549309..4556010+ go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00007060g0011.1 protein AED:0.41 eAED:0.58 QI:0|0|0|1|1|1|3|0|132; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=7e-48) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=1e-30) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=9e-32) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc11g011500.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4549309-4556010 transcript_region:SL2.40ch11:4549309..4556010+ go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00007060g0002.1 protein AED:0.55 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|56744193|dbj|BAD81036.1| (e_value=3e-64) potassium channel TORK1 [Nicotiana tabacum];; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=4e-58) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=3e-59) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc11g011500.1.1 (e_value=9e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4549309-4556010 transcript_region:SL2.40ch11:4549309..4556010+ go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- D0EM91_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00021834g0004.1 protein AED:0.15 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|351; (*GB) gi|359496589|ref|XP_003635272.1| (e_value=6e-73) PREDICTED: clathrin light chain 1-like [Vitis vinifera];; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=1e-56) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=1e-57) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc02g078540.2.1 (e_value=6e-106) genomic_reference:SL2.40ch02 gene_region:37780626-37784558 transcript_region:SL2.40ch02:37780626..37784558- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00025209g0001.1 protein AED:0.06 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|522; (*GB) gi|255554921|ref|XP_002518498.1| (e_value=5e-25) hypothetical protein RCOM_0905070 [Ricinus communis];; (*TAIR) AT4G21895.1 (e_value=4e-19) | Symbols: | DNA binding | chr4:11613523-11614242 REVERSE LENGTH=239;; (*ITAG) Solyc03g031710.1.1 (e_value=3e-143) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:8449848-8451999 transcript_region:SL2.40ch03:8449848..8451999+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 *--- Q9FFT7_ARATH)"; NbS00025209g0011.1 protein AED:0.33 eAED:0.35 QI:40|0|0.5|1|1|1|2|0|268; (*GB) gi|224078874|ref|XP_002305661.1| (e_value=5e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S9T7|VP282_ARATH (e_value=2e-114) Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2;; (*TAIR) AT4G05000.2 (e_value=1e-115) | Symbols: VPS28-1 | Vacuolar protein sorting-associated protein VPS28 family protein | chr4:2563953-2564585 FORWARD LENGTH=210;; (*ITAG) Solyc02g080270.2.1 (e_value=1e-130) genomic_reference:SL2.40ch02 gene_region:39121853-39125587 transcript_region:SL2.40ch02:39121853..39125587- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 28 family protein (AHRD V1 ***- D7MES4_ARALY); contains Interpro domain(s) IPR007143 Vacuolar protein sorting-associated, VPS28 "; GO:0005515 NbS00025209g0012.1 protein AED:0.27 eAED:0.28 QI:128|0.6|0.66|1|0.8|0.83|6|0|436; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=1e-165) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q9SAB3|RB45B_ARATH (e_value=2e-150) Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1;; (*TAIR) AT1G11650.2 (e_value=1e-151) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405;; (*ITAG) Solyc03g031720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8453484-8459499 transcript_region:SL2.40ch03:8453484..8459499- go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **** Q9LEB4_NICPL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00045547g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|90; (*GB) gi|302829881|ref|XP_002946507.1| (e_value=5e-19) hypothetical protein VOLCADRAFT_47883 [Volvox carteri f. nagariensis];; (*SWP) sp|Q9FMV5|NFYC4_ARATH (e_value=4e-19) Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1;; (*TAIR) AT5G63470.2 (e_value=3e-20) | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | chr5:25416332-25417084 REVERSE LENGTH=250;; (*ITAG) Solyc02g091030.2.1 (e_value=3e-39) genomic_reference:SL2.40ch02 gene_region:47044186-47052491 transcript_region:SL2.40ch02:47044186..47052491+ go_terms:GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit C-2 (AHRD V1 *-*- B4FWZ1_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00060367g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|170|85; (*GB) gi|255572577|ref|XP_002527222.1| (e_value=3e-42) Protein BRICK1, putative [Ricinus communis];; (*SWP) sp|Q94JY4|BRK1_ARATH (e_value=5e-43) Protein BRICK 1 OS=Arabidopsis thaliana GN=BRK1 PE=1 SV=1;; (*TAIR) AT2G22640.1 (e_value=4e-44) | Symbols: HSPC300, BRK1, ATBRK1 | BRICK1, putative | chr2:9623283-9623938 FORWARD LENGTH=85;; (*ITAG) Solyc03g043720.2.1 (e_value=4e-49) genomic_reference:SL2.40ch03 gene_region:11205072-11205818 transcript_region:SL2.40ch03:11205072..11205818+ go_terms:GO:0042802 functional_description:"BRICK1 (AHRD V1 ***- A9YWR8_MEDTR)"; GO:0042802 NbS00022144g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|319; (*ITAG) Solyc12g099550.1.1 (e_value=7e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00005732g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.2|0|0.83|1|1|6|0|478; (*GB) gi|255543963|ref|XP_002513044.1| (e_value=3e-173) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=6e-37) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT3G54400.1 (e_value=2e-151) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:20140291-20142599 REVERSE LENGTH=425;; (*ITAG) Solyc01g096450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79304614-79307810 transcript_region:SL2.40ch01:79304614..79307810+ go_terms:GO:0006508,GO:0031177 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TDX6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508,GO:0031177 NbS00040686g0004.1 protein AED:0.22 eAED:0.22 QI:95|1|0.5|1|0|0|2|0|362; (*GB) gi|225449704|ref|XP_002268365.1| (e_value=8e-133) PREDICTED: uncharacterized protein LOC100243738 [Vitis vinifera];; (*TAIR) AT5G04550.1 (e_value=4e-105) | Symbols: | Protein of unknown function (DUF668) | chr5:1303757-1305556 REVERSE LENGTH=599;; (*ITAG) Solyc11g007660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1882649-1884460 transcript_region:SL2.40ch11:1882649..1884460+ functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEV7_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00040686g0008.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|241; (*GB) gi|60476116|gb|AAX21199.1| (e_value=2e-162) putative protein [Nicotiana sylvestris];; (*TAIR) AT5G04550.1 (e_value=5e-70) | Symbols: | Protein of unknown function (DUF668) | chr5:1303757-1305556 REVERSE LENGTH=599;; (*ITAG) Solyc11g007660.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1882649-1884460 transcript_region:SL2.40ch11:1882649..1884460+ functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEV7_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00014171g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.76|0.57|1|0.92|0.85|14|162|2597; (*GB) gi|224062874|ref|XP_002300913.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G76740.1 (e_value=4e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76840.1); Has 3683 Blast hits to 2942 proteins in 407 species: Archae - 9; Bacteria - 440; Metazoa - 1472; Fungi - 269; Plants - 192; Viruses - 8; Other Eukaryotes - 1293 (source: NCBI BLink). | chr1:28805235-28810477 FORWARD LENGTH=1532;; (*ITAG) Solyc04g071660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56237064-56246779 transcript_region:SL2.40ch04:56237064..56246779- functional_description:"Unknown Protein (AHRD V1)"; NbS00014171g0002.1 protein AED:0.09 eAED:0.09 QI:73|0.5|0.33|0.66|1|1|3|0|182; (*GB) gi|90900944|gb|ABE01834.1| (e_value=8e-99) NAK-type protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=2e-62) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT5G47070.1 (e_value=2e-63) | Symbols: | Protein kinase superfamily protein | chr5:19118683-19120528 REVERSE LENGTH=410;; (*ITAG) Solyc08g077560.2.1 (e_value=1e-98) genomic_reference:SL2.40ch08 gene_region:58707667-58711970 transcript_region:SL2.40ch08:58707667..58711970+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00014171g0016.1 protein AED:0.24 eAED:0.24 QI:7|0.66|0.57|1|0.5|0.71|7|0|520; (*GB) gi|13925881|gb|AAK49454.1|AF304374_1 (e_value=0.0) cellulose synthase catalytic subunit [Nicotiana alata];; (*SWP) sp|Q9SJ22|CESA9_ARATH (e_value=0.0) Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1;; (*TAIR) AT2G21770.1 (e_value=0.0) | Symbols: CESA9, CESA09 | cellulose synthase A9 | chr2:9284837-9289495 FORWARD LENGTH=1088;; (*ITAG) Solyc04g071650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00007854g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|181; (*GB) gi|9979177|sp|Q9XHL7.1|TCTP_TOBAC (e_value=4e-76) RecName: Full=Translationally-controlled tumor protein homolog; Short=TCTP;; (*SWP) sp|Q9XHL7|TCTP_TOBAC (e_value=1e-77) Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1;; (*TAIR) AT3G16640.1 (e_value=9e-62) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=3e-69) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00018328g0012.1 protein AED:0.08 eAED:0.08 QI:102|1|1|1|0.62|0.77|9|597|250; (*GB) gi|356567806|ref|XP_003552106.1| (e_value=3e-142) PREDICTED: cyclin-C1-2-like isoform 1 [Glycine max];; (*SWP) sp|Q9FJK7|CCC12_ARATH (e_value=3e-134) Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1;; (*TAIR) AT5G48630.1 (e_value=3e-135) | Symbols: | Cyclin family protein | chr5:19721663-19723200 REVERSE LENGTH=253;; (*ITAG) Solyc06g083260.2.1 (e_value=1e-158) genomic_reference:SL2.40ch06 gene_region:45036952-45042387 transcript_region:SL2.40ch06:45036952..45042387- go_terms:GO:0005515 functional_description:"Cyclin family protein (AHRD V1 ***- D7MM47_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515 NbS00018328g0011.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|270; (*GB) gi|255580537|ref|XP_002531093.1| (e_value=3e-105) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q9LSF8|C82G1_ARATH (e_value=2e-87) Cytochrome P450 82G1 OS=Arabidopsis thaliana GN=CYP82G1 PE=1 SV=1;; (*TAIR) AT3G25180.1 (e_value=2e-88) | Symbols: CYP82G1 | cytochrome P450, family 82, subfamily G, polypeptide 1 | chr3:9167443-9169270 REVERSE LENGTH=515;; (*ITAG) Solyc09g059240.2.1 (e_value=4e-149) genomic_reference:SL2.40ch09 gene_region:49476854-49479960 transcript_region:SL2.40ch09:49476854..49479960+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018328g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|224077538|ref|XP_002305292.1| (e_value=5e-58) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9SZ46|C82C4_ARATH (e_value=4e-48) Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=3e-49) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc09g059240.2.1 (e_value=6e-87) genomic_reference:SL2.40ch09 gene_region:49476854-49479960 transcript_region:SL2.40ch09:49476854..49479960+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018164g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|61651606|dbj|BAD91176.1| (e_value=0.0) plastidic phosphate translocator-like protein1 [Mesembryanthemum crystallinum];; (*SWP) sp|Q9SUV2|PT432_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=2 SV=1;; (*TAIR) AT4G32390.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr4:15636550-15637602 FORWARD LENGTH=350;; (*ITAG) Solyc12g006500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1011031-1012083 transcript_region:SL2.40ch12:1011031..1012083+ functional_description:"Phosphate translocator protein (AHRD V1 **-- A2PZC5_CHLRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00018164g0118.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|0.5|0.33|3|542|326 NbS00018164g0117.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0.33|3|0|1043 NbS00018164g0116.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.88|0.97|0.85|0.85|35|189|1436 NbS00018164g0119.1 protein AED:0.43 eAED:0.59 QI:0|1|0|1|1|1|2|0|63 NbS00018164g0120.1 protein AED:0.11 eAED:0.11 QI:0|0.88|0.8|0.9|0.66|0.8|10|0|411 NbS00018164g0105.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|710 NbS00061927g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0.33|1|0|0.33|3|74|288; (*GB) gi|164449272|gb|ABY56100.1| (e_value=2e-59) hypothetical protein [Cucumis sativus];; (*ITAG) Solyc09g090560.1.1 (e_value=2e-108) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65394745-65395611 transcript_region:SL2.40ch09:65394745..65395611- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00061927g0005.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|0.14|0.12|8|0|268; (*GB) gi|296083715|emb|CBI23704.3| (e_value=5e-121) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8WTM6|ARPC2_CAEEL (e_value=6e-13) Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=2 SV=1;; (*TAIR) AT2G33385.2 (e_value=8e-94) | Symbols: arpc2b | actin-related protein C2B | chr2:14147604-14149769 REVERSE LENGTH=374;; (*ITAG) Solyc09g090550.2.1 (e_value=5e-178) genomic_reference:SL2.40ch09 gene_region:65388721-65393519 transcript_region:SL2.40ch09:65388721..65393519+ go_terms:GO:0005198 functional_description:"Actin related protein 2/3 complex subunit 2 (AHRD V1 ***- D8RD91_SELML); contains Interpro domain(s) IPR007188 Arp2/3 complex, 34kDa subunit p34-Arc "; GO:0005198 NbS00061927g0006.1 protein AED:0.45 eAED:1.00 QI:2|0|0|1|0|0|2|97|44 NbS00027568g0007.1 protein AED:0.02 eAED:0.02 QI:46|1|1|1|1|1|2|238|532; (*GB) gi|332071121|gb|AED99879.1| (e_value=0.0) cytochrome P450, partial [Panax notoginseng];; (*SWP) sp|O48927|C78A3_SOYBN (e_value=0.0) Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1;; (*TAIR) AT2G46660.1 (e_value=0.0) | Symbols: CYP78A6 | cytochrome P450, family 78, subfamily A, polypeptide 6 | chr2:19153602-19155417 REVERSE LENGTH=530;; (*ITAG) Solyc05g047680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58310495-58312397 transcript_region:SL2.40ch05:58310495..58312397+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00027568g0008.1 protein AED:0.41 eAED:0.41 QI:0|0.8|0.83|0.83|0.2|0.33|6|301|228; (*GB) gi|33667908|gb|AAQ24533.1| (e_value=1e-79) P18 [Solanum chacoense];; (*SWP) sp|O64644|SAP18_ARATH (e_value=6e-58) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=5e-59) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=2e-82) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ go_terms:GO:0003714 functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "; GO:0003714 NbS00006125g0002.1 protein AED:0.29 eAED:0.29 QI:187|0.57|0.62|1|0.85|0.87|8|0|798; (*GB) gi|225446761|ref|XP_002278350.1| (e_value=1e-180) PREDICTED: pentatricopeptide repeat-containing protein At3g59040 [Vitis vinifera];; (*SWP) sp|Q9LYT2|PP287_ARATH (e_value=2e-173) Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2;; (*TAIR) AT3G59040.1 (e_value=1e-174) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21821495-21824233 REVERSE LENGTH=583;; (*ITAG) Solyc07g043600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54872270-54879482 transcript_region:SL2.40ch07:54872270..54879482+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LWA0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006125g0017.1 protein AED:0.18 eAED:0.18 QI:17|0.92|0.85|1|1|0.92|14|0|888; (*GB) gi|296278602|gb|ADH04265.1| (e_value=0.0) ARF1 [Nicotiana benthamiana];; (*SWP) sp|Q6H6V4|ARFF_ORYSJ (e_value=0.0) Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1;; (*TAIR) AT1G30330.2 (e_value=0.0) | Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=935;; (*ITAG) Solyc07g043620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54884781-54890195 transcript_region:SL2.40ch07:54884781..54890195- go_terms:GO:0003700 functional_description:"Auxin response factor 6-1 (AHRD V1 **** D9IUY5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00029372g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.42|0.12|0.75|1|1|8|0|254; (*GB) gi|296086636|emb|CBI32271.3| (e_value=3e-133) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82261|DEGP2_ARATH (e_value=3e-127) Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana GN=DEGP2 PE=1 SV=2;; (*TAIR) AT2G47940.1 (e_value=2e-128) | Symbols: DEGP2 | DEGP protease 2 | chr2:19618372-19622164 REVERSE LENGTH=607;; (*ITAG) Solyc06g084480.2.1 (e_value=1e-140) genomic_reference:SL2.40ch06 gene_region:45856487-45871420 transcript_region:SL2.40ch06:45856487..45871420+ go_terms:GO:0004252 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0004252 NbS00029372g0005.1 protein AED:0.53 eAED:0.55 QI:0|0|0|0.2|1|1|5|0|182 NbS00029372g0003.1 protein AED:0.12 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|296086633|emb|CBI32268.3| (e_value=2e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03470.2 (e_value=1e-19) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:866217-867493 REVERSE LENGTH=269;; (*ITAG) Solyc09g074470.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:61759131-61761034 transcript_region:SL2.40ch09:61759131..61761034- functional_description:"Kinase interacting family protein (AHRD V1 ***- D7KCF2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00008027g0004.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|1|1|2|0|206; (*GB) gi|147769048|emb|CAN66732.1| (e_value=2e-14) hypothetical protein VITISV_032666 [Vitis vinifera];; (*ITAG) Solyc09g014950.1.1 (e_value=4e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:7302395-7303293 transcript_region:SL2.40ch09:7302395..7303293+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049366g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.5|1|0.8|0.66|6|0|565; (*GB) gi|300836821|gb|ADK38538.1| (e_value=4e-133) methylketone synthase Ib [Solanum lycopersicum];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=4e-73) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23610.1 (e_value=2e-70) | Symbols: ATMES3, MES3 | methyl esterase 3 | chr2:10044410-10046403 REVERSE LENGTH=263;; (*ITAG) Solyc01g108740.2.1 (e_value=7e-154) genomic_reference:SL2.40ch01 gene_region:87713290-87714523 transcript_region:SL2.40ch01:87713290..87714523- go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LG04_ARALY)"; GO:0080031,GO:0080030 NbS00005699g0001.1 protein AED:0.21 eAED:0.26 QI:0|0|0|1|0|0|2|0|196; (*GB) gi|255541932|ref|XP_002512030.1| (e_value=3e-59) Flavonol 4'-sulfotransferase, putative [Ricinus communis];; (*SWP) sp|P52839|SOT12_ARATH (e_value=3e-50) Cytosolic sulfotransferase 12 OS=Arabidopsis thaliana GN=SOT12 PE=1 SV=2;; (*TAIR) AT2G03760.1 (e_value=2e-51) | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12, SOT12 | sulphotransferase 12 | chr2:1149475-1150455 REVERSE LENGTH=326;; (*ITAG) Solyc05g011870.1.1 (e_value=1e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbS00011526g0003.1 protein AED:0.16 eAED:0.17 QI:46|0.66|0.75|1|1|1|4|0|326; (*GB) gi|259414641|gb|ACW82412.1| (e_value=2e-166) putative peroxidase [Olea europaea];; (*SWP) sp|Q43872|PER64_ARATH (e_value=8e-143) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=6e-144) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc02g083480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41447341-41448838 transcript_region:SL2.40ch02:41447341..41448838+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- A9PGX3_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00016380g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|108; (*ITAG) Solyc03g044840.1.1 (e_value=9e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00006794g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|255572714|ref|XP_002527290.1| (e_value=3e-93) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=1e-62) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT5G48380.1 (e_value=9e-64) | Symbols: BIR1 | BAK1-interacting receptor-like kinase 1 | chr5:19604584-19606532 REVERSE LENGTH=620;; (*ITAG) Solyc06g082920.2.1 (e_value=2e-120) genomic_reference:SL2.40ch06 gene_region:44836567-44839100 transcript_region:SL2.40ch06:44836567..44839100- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00022143g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|225429512|ref|XP_002278652.1| (e_value=2e-62) PREDICTED: glutaredoxin-C6 [Vitis vinifera];; (*SWP) sp|Q8L9S3|GRXC6_ARATH (e_value=2e-46) Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2;; (*TAIR) AT4G33040.1 (e_value=1e-47) | Symbols: | Thioredoxin superfamily protein | chr4:15940779-15941213 REVERSE LENGTH=144;; (*ITAG) Solyc08g062970.1.1 (e_value=3e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:49664250-49664669 transcript_region:SL2.40ch08:49664250..49664669- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9H2P7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00006907g0003.1 protein AED:0.09 eAED:0.09 QI:59|1|1|1|0.8|0.83|6|547|331; (*GB) gi|317106688|dbj|BAJ53190.1| (e_value=1e-153) JMS09K11.8 [Jatropha curcas];; (*TAIR) AT1G21600.2 (e_value=2e-148) | Symbols: PTAC6 | plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328;; (*ITAG) Solyc04g057870.2.1 (e_value=7e-180) genomic_reference:SL2.40ch04 gene_region:54113945-54119907 transcript_region:SL2.40ch04:54113945..54119907+ functional_description:"Os11g0110100 protein (Fragment) (AHRD V1 ***- Q0IV61_ORYSJ)"; NbS00006907g0121.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.42|0.85|1|1|7|0|261 NbS00006907g0117.1 protein AED:0.34 eAED:0.34 QI:0|0.71|0.66|0.93|0.71|0.73|15|509|927 NbS00006907g0119.1 protein AED:0.01 eAED:0.01 QI:123|1|0.66|1|0.5|0.66|3|0|317 NbS00003803g0002.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|127; (*GB) gi|33520429|gb|AAQ21124.1| (e_value=7e-29) pectinesterase [Fragaria x ananassa];; (*SWP) sp|Q43062|PME_PRUPE (e_value=1e-29) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G05620.1 (e_value=1e-30) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=543;; (*ITAG) Solyc00g023470.1.1 (e_value=7e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00029590g0001.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|1|1|2|0|198; (*GB) gi|255575993|ref|XP_002528892.1| (e_value=2e-18) hypothetical protein RCOM_0187400 [Ricinus communis];; (*TAIR) AT3G53440.2 (e_value=3e-11) | Symbols: | Homeodomain-like superfamily protein | chr3:19810936-19812474 FORWARD LENGTH=512;; (*ITAG) Solyc01g068540.2.1 (e_value=5e-46) genomic_reference:SL2.40ch01 gene_region:70151031-70157046 transcript_region:SL2.40ch01:70151031..70157046+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017877 MYB-like "; NbS00029590g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|356557042|ref|XP_003546827.1| (e_value=2e-75) PREDICTED: 50S ribosomal protein L7/L12-like [Glycine max];; (*SWP) sp|P41189|RL7_LIBAF (e_value=6e-17) 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1;; (*TAIR) AT1G70190.2 (e_value=1e-69) | Symbols: | Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like | chr1:26430616-26431242 FORWARD LENGTH=208;; (*ITAG) Solyc02g031970.1.1 (e_value=8e-108) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:17931623-17932270 transcript_region:SL2.40ch02:17931623..17932270- go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00055627g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|79; (*ITAG) Solyc07g009260.2.1 (e_value=2e-12) genomic_reference:SL2.40ch07 gene_region:4313698-4315233 transcript_region:SL2.40ch07:4313698..4315233- go_terms:GO:0006952 functional_description:"Defensin-like protein (AHRD V1 ***- B5TGN1_VICFA); contains Interpro domain(s) IPR008176 Gamma thionin "; GO:0006952 NbS00034883g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0.5|1|3|104|224; (*GB) gi|356573149|ref|XP_003554726.1| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100816781 [Glycine max];; (*TAIR) AT3G04590.1 (e_value=9e-39) | Symbols: | AT hook motif DNA-binding family protein | chr3:1239213-1241603 REVERSE LENGTH=309;; (*ITAG) Solyc11g006190.1.1 (e_value=2e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:934195-941588 transcript_region:SL2.40ch11:934195..941588- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 14 (AHRD V1 ***- Q9SR16_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00011605g0005.1 protein AED:0.10 eAED:0.10 QI:1215|1|1|1|0.66|1|4|546|626; (*GB) gi|225438984|ref|XP_002284345.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2-like [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc03g044090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12003209-12007502 transcript_region:SL2.40ch03:12003209..12007502+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00003415g0004.1 protein AED:0.38 eAED:0.38 QI:91|0.77|0.9|1|0.66|0.7|10|177|262; (*GB) gi|358249236|ref|NP_001239760.1| (e_value=4e-86) uncharacterized protein LOC100790552 [Glycine max];; (*TAIR) AT3G11620.1 (e_value=1e-80) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:3669551-3671734 REVERSE LENGTH=312;; (*ITAG) Solyc01g007790.2.1 (e_value=8e-125) genomic_reference:SL2.40ch01 gene_region:1939495-1948962 transcript_region:SL2.40ch01:1939495..1948962+ functional_description:"UPF0554 protein C2orf43 homolog (AHRD V1 **-- CB043_CHICK); contains Interpro domain(s) IPR019363 Protein of unknown function DUF2305 "; NbS00013725g0011.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.5|1|0.8|0.66|6|237|345; (*GB) gi|225432860|ref|XP_002283908.1| (e_value=8e-102) PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera];; (*TAIR) AT3G22990.1 (e_value=1e-80) | Symbols: LFR | ARM repeat superfamily protein | chr3:8164015-8166145 FORWARD LENGTH=460;; (*ITAG) Solyc09g083000.2.1 (e_value=6e-107) genomic_reference:SL2.40ch09 gene_region:64092690-64097563 transcript_region:SL2.40ch09:64092690..64097563+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MXC7 (AHRD V1 ***- Q9LS90_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00013725g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|6|492|376; (*GB) gi|350538241|ref|NP_001234589.1| (e_value=0.0) GDP-mannose 3',5'-epimerase [Solanum lycopersicum];; (*SWP) sp|A3C4S4|GME1_ORYSJ (e_value=0.0) GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1;; (*TAIR) AT5G28840.2 (e_value=0.0) | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377;; (*ITAG) Solyc09g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64083974-64088590 transcript_region:SL2.40ch09:64083974..64088590- go_terms:GO:0048040 functional_description:"GDP-D-mannose-3## ,5## -epimerase 2"; GO:0048040 NbS00013725g0006.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|76161006|gb|ABA40466.1| (e_value=2e-25) unknown [Solanum tuberosum];; (*TAIR) AT1G05760.1 (e_value=1e-15) | Symbols: RTM1 | Mannose-binding lectin superfamily protein | chr1:1723797-1724440 REVERSE LENGTH=174;; (*ITAG) Solyc09g083020.1.1 (e_value=7e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:64102512-64102985 transcript_region:SL2.40ch09:64102512..64102985- go_terms:GO:0005529 functional_description:"Myrosinase-binding protein-like protein (AHRD V1 **-* Q9M5W9_ARATH); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00034393g0007.1 protein AED:0.23 eAED:0.23 QI:369|1|1|1|0.88|0.8|10|428|258; (*GB) gi|6094336|sp|O48660.1|SPDE_NICSY (e_value=0.0) RecName: Full=Spermidine synthase; AltName: Full=Putrescine aminopropyltransferase; Short=Aminopropyltransferase;; (*SWP) sp|O48660|SPDE_NICSY (e_value=0.0) Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G23820.1 (e_value=2e-156) | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378;; (*ITAG) Solyc05g005710.2.1 (e_value=4e-173) genomic_reference:SL2.40ch05 gene_region:526630-530399 transcript_region:SL2.40ch05:526630..530399+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** Q93X16_SOLTU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00051222g0007.1 protein AED:0.11 eAED:0.11 QI:24|1|0.87|1|1|1|16|47|1704; (*GB) gi|334302903|sp|Q9FLQ7.3|FH20_ARATH (e_value=0.0) RecName: Full=Formin-like protein 20; Short=AtFH20;; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=0.0) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=0.0) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc06g069670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39776906-39790412 transcript_region:SL2.40ch06:39776906..39790412+ go_terms:GO:0030036 functional_description:"Formin 2A (AHRD V1 *-*- C7BGM8_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00051222g0009.1 protein AED:0.86 eAED:1.00 QI:0|0|0|0.33|0|0.33|3|0|127 NbS00032633g0005.1 protein AED:0.30 eAED:0.30 QI:153|0.88|0.88|1|0.70|0.83|18|0|884; (*GB) gi|297741007|emb|CBI31319.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5M868|GBA2_RAT (e_value=2e-174) Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2;; (*TAIR) AT5G49900.1 (e_value=0.0) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr5:20297235-20302019 REVERSE LENGTH=957;; (*ITAG) Solyc11g042460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:31903607-31909842 transcript_region:SL2.40ch11:31903607..31909842+ go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9SS77_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00016689g0006.1 protein AED:0.00 eAED:0.00 QI:150|1|1|1|1|1|2|190|151; (*GB) gi|147858316|emb|CAN81418.1| (e_value=2e-55) hypothetical protein VITISV_035938 [Vitis vinifera];; (*TAIR) AT2G15780.1 (e_value=2e-51) | Symbols: | Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257;; (*ITAG) Solyc01g108360.2.1 (e_value=6e-99) genomic_reference:SL2.40ch01 gene_region:87458504-87459478 transcript_region:SL2.40ch01:87458504..87459478+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00016689g0007.1 protein AED:0.19 eAED:0.19 QI:218|1|0.85|1|1|1|7|426|379; (*GB) gi|355329950|dbj|BAL14274.1| (e_value=0.0) cyclophilin 40 [Nicotiana tabacum];; (*SWP) sp|Q9C566|CYP40_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1;; (*TAIR) AT2G15790.1 (e_value=0.0) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361;; (*ITAG) Solyc01g108340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87448017-87452641 transcript_region:SL2.40ch01:87448017..87452641+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003755 NbS00007307g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|7|604|640; (*GB) gi|225456491|ref|XP_002280902.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein alr3466 [Vitis vinifera];; (*TAIR) AT5G50970.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512;; (*ITAG) Solyc12g042200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42688645-42702623 transcript_region:SL2.40ch12:42688645..42702623+ functional_description:"U5 small nuclear ribonucleoprotein protein (AHRD V1 *--- C1BSR6_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00007307g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|0.5|2|0|335; (*GB) gi|225456495|ref|XP_002280924.1| (e_value=4e-51) PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera];; (*SWP) sp|Q9LY29|EF115_ARATH (e_value=3e-36) Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1;; (*TAIR) AT5G07310.1 (e_value=2e-37) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:2305684-2306660 FORWARD LENGTH=263;; (*ITAG) Solyc12g042210.1.1 (e_value=1e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:42707005-42708328 transcript_region:SL2.40ch12:42707005..42708328+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014084g0003.1 protein AED:0.34 eAED:0.36 QI:0|0|0|0.5|1|0.5|4|0|152; (*GB) gi|3790355|dbj|BAA33971.1| (e_value=1e-65) chitinase 134 [Nicotiana tabacum];; (*SWP) sp|Q05537|CHID_SOLLC (e_value=4e-56) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1;; (*TAIR) AT3G12500.1 (e_value=2e-44) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g082960.2.1 (e_value=6e-60) genomic_reference:SL2.40ch02 gene_region:41142255-41143956 transcript_region:SL2.40ch02:41142255..41143956+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00018998g0013.1 protein AED:0.08 eAED:0.08 QI:154|1|1|1|0.5|0.66|3|338|319; (*GB) gi|5453379|gb|AAD43561.1|AF155124_1 (e_value=3e-174) bacterial-induced peroxidase precursor [Gossypium hirsutum];; (*SWP) sp|Q9FLC0|PER52_ARATH (e_value=2e-143) Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1;; (*TAIR) AT5G05340.1 (e_value=2e-144) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc03g025380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7193903-7196417 transcript_region:SL2.40ch03:7193903..7196417+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q58GF4_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00018998g0014.1 protein AED:0.21 eAED:0.21 QI:82|1|1|1|0.81|0.83|12|463|424; (*GB) gi|357452871|ref|XP_003596712.1| (e_value=0.0) Shaggy-related protein kinase [Medicago truncatula];; (*SWP) sp|Q39010|KSG6_ARATH (e_value=0.0) Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=2 SV=2;; (*TAIR) AT2G30980.1 (e_value=0.0) | Symbols: ASKdZeta, ATSK23, BIL1, ATSK2-2, SKdZeta | SHAGGY-related protein kinase dZeta | chr2:13182350-13185870 REVERSE LENGTH=412;; (*ITAG) Solyc07g055200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60638546-60643483 transcript_region:SL2.40ch07:60638546..60643483+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018998g0022.1 protein AED:0.40 eAED:0.40 QI:0|0.75|0.4|0.8|0.5|0.6|5|0|209; (*GB) gi|223944105|gb|ACN26136.1| (e_value=5e-74) unknown [Zea mays];; (*SWP) sp|Q0DK10|RL11_ORYSJ (e_value=2e-74) 60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1;; (*TAIR) AT2G42740.1 (e_value=5e-75) | Symbols: RPL16A | ribosomal protein large subunit 16A | chr2:17791794-17792946 FORWARD LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00018998g0021.1 protein AED:0.24 eAED:0.45 QI:0|0|0.5|1|0|0|2|120|84 NbS00018998g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.25|0.6|5|1306|390; (*GB) gi|225454807|ref|XP_002274300.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Vitis vinifera];; (*SWP) sp|P0C043|PP318_ARATH (e_value=7e-135) Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1;; (*TAIR) AT5G46680.1 (e_value=3e-125) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:18941118-18942524 FORWARD LENGTH=468;; (*ITAG) Solyc07g055220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60656922-60658304 transcript_region:SL2.40ch07:60656922..60658304- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRB7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018998g0017.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|10|433|424; (*GB) gi|224131392|ref|XP_002321073.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P46643|AAT1_ARATH (e_value=0.0) Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1;; (*TAIR) AT2G30970.2 (e_value=0.0) | Symbols: ASP1 | aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430;; (*ITAG) Solyc07g055210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60644169-60648539 transcript_region:SL2.40ch07:60644169..60648539- go_terms:GO:0006520,GO:0009058,GO:0030170 functional_description:"Aspartate aminotransferase (AHRD V1 ***- B9SW33_RICCO); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0006520,GO:0009058,GO:0030170 NbS00018859g0007.1 protein AED:0.25 eAED:0.28 QI:0|0|0|1|1|1|3|0|167 NbS00024245g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|123 NbS00025066g0003.1 protein AED:0.10 eAED:0.16 QI:582|0|0.5|1|1|0.5|2|536|102 NbS00036561g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|0|2|0|107; (*GB) gi|110083945|gb|ABG49145.1| (e_value=3e-34) proteinase inhibitor isoform [Solanum phureja];; (*SWP) sp|P20076|IER1_SOLLC (e_value=1e-18) Ethylene-responsive proteinase inhibitor 1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT5G43580.1 (e_value=2e-13) | Symbols: | Serine protease inhibitor, potato inhibitor I-type family protein | chr5:17508098-17508668 REVERSE LENGTH=99;; (*ITAG) Solyc09g089510.2.1 (e_value=4e-37) genomic_reference:SL2.40ch09 gene_region:64566672-64567726 transcript_region:SL2.40ch09:64566672..64567726+ go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q3S492_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00036561g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|91 NbS00036561g0010.1 protein AED:0.28 eAED:0.54 QI:0|0|0|1|0|0|3|0|148; (*ITAG) Solyc04g017730.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:7897521-7898423 transcript_region:SL2.40ch04:7897521..7898423+ functional_description:"Zinc finger CCHC-type (AHRD V1 ***- Q1SKZ9_MEDTR)"; NbS00002403g0007.1 protein AED:0.28 eAED:0.28 QI:132|0.83|0.71|1|0.66|1|7|0|260; (*GB) gi|356502904|ref|XP_003520254.1| (e_value=1e-99) PREDICTED: UPF0760 protein C2orf29-like [Glycine max];; (*TAIR) AT5G18420.3 (e_value=4e-78) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:6105638-6109337 REVERSE LENGTH=439;; (*ITAG) Solyc04g024500.2.1 (e_value=8e-154) genomic_reference:SL2.40ch04 gene_region:12989357-12998283 transcript_region:SL2.40ch04:12989357..12998283+ functional_description:"UPF0760 protein C2orf29 homolog (AHRD V1 ***- CB029_DANRE)"; NbS00002403g0008.1 protein AED:0.36 eAED:0.40 QI:0|0.8|0.5|1|0.4|0.33|6|0|177; (*GB) gi|296084830|emb|CBI27712.3| (e_value=2e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UKZ1|CB029_HUMAN (e_value=9e-88) UPF0760 protein C2orf29 OS=Homo sapiens GN=C2orf29 PE=1 SV=1;; (*TAIR) AT5G18420.1 (e_value=3e-86) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6105638-6109337 REVERSE LENGTH=441;; (*ITAG) Solyc04g024510.2.1 (e_value=1e-109) genomic_reference:SL2.40ch04 gene_region:13007046-13009803 transcript_region:SL2.40ch04:13007046..13009803+ functional_description:"UPF0760 protein C2orf29 homolog (AHRD V1 **-- CB029_MOUSE); contains Interpro domain(s) IPR019312 Protein of unknown function DUF2363 "; NbS00002403g0104.1 protein AED:0.19 eAED:0.19 QI:70|0.8|0.90|1|0.7|0.63|11|464|481 NbS00002403g0201.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|82|745 NbS00002403g0211.1 protein AED:0.32 eAED:0.32 QI:115|1|0.8|1|1|1|5|0|343 NbS00002403g0202.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|194 NbS00002403g0313.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|1|0.75|0.6|5|314|129 NbS00002403g0312.1 protein AED:0.18 eAED:0.18 QI:148|0|0.33|0.66|0.5|0.33|3|147|76 NbS00002403g0301.1 protein AED:0.85 eAED:0.99 QI:0|0|0|0.33|1|1|3|0|319 NbS00031921g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.81|0.83|1|1|1|12|170|382; (*GB) gi|255539182|ref|XP_002510656.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G42430.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891512-15894322 FORWARD LENGTH=426;; (*ITAG) Solyc04g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63599630-63604934 transcript_region:SL2.40ch04:63599630..63604934- functional_description:"Os03g0133300 protein (Fragment) (AHRD V1 ***- Q0DVF0_ORYSJ)"; NbS00031921g0013.1 protein AED:0.31 eAED:0.34 QI:105|0.83|0.76|1|0.25|0.38|13|0|305; (*GB) gi|302141668|emb|CBI18871.3| (e_value=9e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NPN9|DWA2_ARATH (e_value=4e-159) WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1;; (*TAIR) AT1G20540.1 (e_value=1e-162) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:7112652-7115191 FORWARD LENGTH=351;; (*ITAG) Solyc04g082300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63607549-63614167 transcript_region:SL2.40ch04:63607549..63614167- go_terms:GO:0005515,GO:0000166 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* D0NGC2_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00017024g0004.1 protein AED:0.16 eAED:0.16 QI:31|0.87|0.77|1|0.62|0.66|9|295|350; (*GB) gi|224100351|ref|XP_002311843.1| (e_value=2e-169) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39080.1 (e_value=2e-154) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:16309981-16312475 REVERSE LENGTH=351;; (*ITAG) Solyc06g054530.2.1 (e_value=8e-119) genomic_reference:SL2.40ch06 gene_region:33772770-33775313 transcript_region:SL2.40ch06:33772770..33775313+ functional_description:"MRNA complete cds clone RAFL24-13-K22 (AHRD V1 ***- Q67YQ9_ARATH)"; NbS00017024g0005.1 protein AED:0.26 eAED:0.47 QI:0|0.4|0.36|0.90|0.5|0.54|11|0|277; (*GB) gi|255551659|ref|XP_002516875.1| (e_value=1e-85) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q96PM5|ZN363_HUMAN (e_value=9e-34) RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1;; (*TAIR) AT5G18650.1 (e_value=4e-85) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:6218260-6220374 FORWARD LENGTH=267;; (*ITAG) Solyc01g067360.2.1 (e_value=8e-96) genomic_reference:SL2.40ch01 gene_region:68204221-68208658 transcript_region:SL2.40ch01:68204221..68208658- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q2QP88_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00023577g0006.1 protein AED:0.16 eAED:0.16 QI:494|0.6|0.66|1|0.4|0.33|6|822|601; (*GB) gi|359495481|ref|XP_002271412.2| (e_value=0.0) PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Vitis vinifera];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=0.0) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=0.0) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc02g079190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38380126-38384863 transcript_region:SL2.40ch02:38380126..38384863+ go_terms:GO:0005515 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00043278g0013.1 protein AED:0.00 eAED:0.00 QI:218|1|0.66|1|1|1|3|0|363; (*GB) gi|224072212|ref|XP_002303655.1| (e_value=2e-175) predicted protein [Populus trichocarpa];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=1e-141) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT4G10955.2 (e_value=1e-142) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:6713778-6715372 REVERSE LENGTH=350;; (*ITAG) Solyc08g082450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62421383-62426129 transcript_region:SL2.40ch08:62421383..62426129+ go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7LYU5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00043278g0015.1 protein AED:0.10 eAED:0.10 QI:326|1|1|1|0.87|0.88|9|370|350; (*GB) gi|37781556|gb|AAP42567.1| (e_value=0.0) UDP-glucose 4-epimerase [Solanum tuberosum];; (*SWP) sp|O65781|GALE2_CYATE (e_value=0.0) UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1;; (*TAIR) AT4G10960.1 (e_value=0.0) | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351;; (*ITAG) Solyc08g082440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62414609-62418848 transcript_region:SL2.40ch08:62414609..62418848+ go_terms:GO:0003978,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** Q6XZA0_SOLTU); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0003978,GO:0042803 NbS00043278g0014.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|364|603; (*GB) gi|225426304|ref|XP_002268042.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=2e-43) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT5G24240.1 (e_value=0.0) | Symbols: | Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein | chr5:8231110-8232925 REVERSE LENGTH=574;; (*ITAG) Solyc08g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62431860-62434624 transcript_region:SL2.40ch08:62431860..62434624- go_terms:GO:0004428 functional_description:"Phosphatidylinositol 3-and 4-kinase family (Fragment) (AHRD V1 *--* A6N0X2_ORYSI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00043278g0017.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|247; (*GB) gi|225426306|ref|XP_002268138.1| (e_value=1e-93) PREDICTED: uncharacterized protein LOC100244412 [Vitis vinifera];; (*TAIR) AT4G23930.1 (e_value=3e-54) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:12436131-12436694 REVERSE LENGTH=187;; (*ITAG) Solyc08g082470.1.1 (e_value=8e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62430091-62430684 transcript_region:SL2.40ch08:62430091..62430684- functional_description:"Harpin-induced protein (AHRD V1 ***- B6SQ86_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00005969g0002.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.55|0.88|1|1|9|177|561; (*GB) gi|225456270|ref|XP_002283518.1| (e_value=0.0) PREDICTED: nucleolar protein 56-like [Vitis vinifera];; (*SWP) sp|O94514|NOP56_SCHPO (e_value=6e-151) Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=2 SV=1;; (*TAIR) AT1G56110.1 (e_value=0.0) | Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522;; (*ITAG) Solyc01g100570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbS00005969g0001.1 protein AED:0.12 eAED:0.12 QI:71|0|0.5|1|0|1|2|0|488; (*GB) gi|147819856|emb|CAN71816.1| (e_value=7e-149) hypothetical protein VITISV_023421 [Vitis vinifera];; (*SWP) sp|Q9FZ24|PPR4_ARATH (e_value=9e-72) Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1;; (*TAIR) AT1G02370.1 (e_value=7e-73) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:474516-476383 FORWARD LENGTH=537;; (*ITAG) Solyc01g100580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82326836-82329906 transcript_region:SL2.40ch01:82326836..82329906+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB79_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005969g0118.1 protein AED:0.06 eAED:0.05 QI:0|0.83|0.71|0.85|1|1|7|493|672 NbS00005969g0104.1 protein AED:0.26 eAED:0.26 QI:305|0.91|0.84|1|1|1|13|0|462 NbS00005969g0119.1 protein AED:0.69 eAED:0.69 QI:27|0|0|0.33|0.5|1|3|0|155 NbS00005969g0121.1 protein AED:0.03 eAED:0.03 QI:829|1|1|1|0|0.5|2|532|246 NbS00015399g0001.1 protein AED:0.22 eAED:0.22 QI:239|0.5|0.66|0.66|0.5|0.33|3|0|167 NbS00009621g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0|2|0|309; (*GB) gi|326534432|gb|ADZ76434.1| (e_value=8e-102) myricetin O-methyltransferase 2 [Solanum habrochaites];; (*SWP) sp|B0EXJ8|HTOMT_CATRO (e_value=1e-91) Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=3e-41) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g068550.2.1 (e_value=3e-137) genomic_reference:SL2.40ch01 gene_region:70160716-70161864 transcript_region:SL2.40ch01:70160716..70161864+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00021933g0004.1 protein AED:0.24 eAED:0.24 QI:543|1|1|1|0.6|0.5|6|276|152; (*GB) gi|224142153|ref|XP_002324423.1| (e_value=3e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H0W1|PLSP1_ARATH (e_value=3e-89) Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2;; (*TAIR) AT3G24590.1 (e_value=2e-90) | Symbols: PLSP1 | plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291;; (*ITAG) Solyc12g007120.1.1 (e_value=1e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1555500-1559696 transcript_region:SL2.40ch12:1555500..1559696+ go_terms:GO:0016020,GO:0016021 functional_description:"Signal peptidase I (AHRD V1 *-*- B1WP51_CYAA5); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0016020,GO:0016021 NbS00026540g0004.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|0.5|0.33|3|0|424; (*GB) gi|255540939|ref|XP_002511534.1| (e_value=3e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G18850.1 (e_value=1e-113) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6504928-6506127 REVERSE LENGTH=399;; (*ITAG) Solyc06g071010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40010456-40014163 transcript_region:SL2.40ch06:40010456..40014163+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025041g0013.1 protein AED:0.06 eAED:0.06 QI:6|0.83|0.71|1|0.33|0.71|7|192|328; (*GB) gi|224132700|ref|XP_002327859.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55DL2|MET18_DICDI (e_value=1e-13) Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1;; (*TAIR) AT2G43320.2 (e_value=2e-164) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17996874-17999158 REVERSE LENGTH=351;; (*ITAG) Solyc06g073380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41600652-41611506 transcript_region:SL2.40ch06:41600652..41611506- functional_description:"UPF0558 protein C1orf156 homolog (AHRD V1 *--- CA156_BOVIN)"; NbS00025041g0007.1 protein AED:0.30 eAED:0.52 QI:0|0|0|1|1|1|2|0|172; (*GB) gi|57013914|ref|YP_173387.1| (e_value=6e-59) hypothetical protein NitaMp041 [Nicotiana tabacum]; NbS00025041g0010.1 protein AED:0.22 eAED:0.22 QI:85|1|1|1|1|1|4|295|152; (*GB) gi|76573321|gb|ABA46765.1| (e_value=2e-97) unknown [Solanum tuberosum];; (*SWP) sp|P34788|RS18_ARATH (e_value=4e-92) 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1;; (*TAIR) AT4G09800.1 (e_value=3e-93) | Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152;; (*ITAG) Solyc06g073370.2.1 (e_value=2e-99) genomic_reference:SL2.40ch06 gene_region:41598535-41600264 transcript_region:SL2.40ch06:41598535..41600264+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S18 (AHRD V1 ***- B4G286_MAIZE); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003735,GO:0005515 NbS00048904g0009.1 protein AED:0.05 eAED:0.07 QI:0|0.25|0.2|1|0.75|0.8|5|0|295; (*GB) gi|297735646|emb|CBI18140.3| (e_value=3e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RX71|BAG4_ARATH (e_value=6e-41) BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana GN=BAG4 PE=1 SV=1;; (*TAIR) AT3G51780.1 (e_value=4e-42) | Symbols: ATBAG4, BAG4 | BCL-2-associated athanogene 4 | chr3:19207029-19208178 REVERSE LENGTH=269;; (*ITAG) Solyc10g085290.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63843260-63847951 transcript_region:SL2.40ch10:63843260..63847951+ go_terms:GO:0006915 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00048904g0006.1 protein AED:0.10 eAED:0.10 QI:161|1|1|1|0.5|0.66|3|328|122; (*GB) gi|225439528|ref|XP_002263502.1| (e_value=4e-74) PREDICTED: uncharacterized protein At5g01610 [Vitis vinifera];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=4e-73) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT5G37070.1 (e_value=2e-75) | Symbols: | Protein of unknown function, DUF538 | chr5:14651091-14652147 FORWARD LENGTH=170;; (*ITAG) Solyc10g085300.1.1 (e_value=1e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63850620-63853872 transcript_region:SL2.40ch10:63850620..63853872- functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00003409g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|0|273; (*GB) gi|12330698|gb|AAG52887.1|AF333386_1 (e_value=7e-166) beta-expansin-like protein [Nicotiana tabacum];; (*SWP) sp|Q5W6Z9|EXB18_ORYSJ (e_value=3e-73) Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1;; (*TAIR) AT2G45110.1 (e_value=4e-74) | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin B4 | chr2:18599575-18601237 FORWARD LENGTH=259;; (*ITAG) Solyc10g018500.1.1 (e_value=3e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8368578-8370432 transcript_region:SL2.40ch10:8368578..8370432- go_terms:GO:0005576 functional_description:"Expansin protein (AHRD V1 ***- Q14F61_WHEAT); contains Interpro domain(s) IPR014734 Pollen allergen, N-terminal "; GO:0005576 NbS00003409g0010.1 protein AED:0.26 eAED:0.63 QI:0|0|0.33|1|0|0|3|31|91 NbS00035693g0002.1 protein AED:0.22 eAED:0.22 QI:241|0.96|0.96|1|0.82|0.79|29|332|1607; (*GB) gi|171854661|dbj|BAG16520.1| (e_value=0.0) putative multidrug resistance-associated protein [Capsicum chinense];; (*SWP) sp|Q42093|AB2C_ARATH (e_value=0.0) ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2;; (*TAIR) AT2G34660.2 (e_value=0.0) | Symbols: MRP2, ABCC2, AtABCC2 | multidrug resistance-associated protein 2 | chr2:14603267-14612387 FORWARD LENGTH=1623;; (*ITAG) Solyc08g006880.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1422494-1449145 transcript_region:SL2.40ch08:1422494..1449145- go_terms:GO:0008559 functional_description:"ABC transporter C family member 2 (AHRD V1 **-- AB2C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0008559 NbS00022864g0010.1 protein AED:0.01 eAED:0.01 QI:86|1|1|1|1|1|2|632|476; (*GB) gi|297823151|ref|XP_002879458.1| (e_value=0.0) hypothetical protein ARALYDRAFT_902431 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G33570.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF23) | chr2:14217361-14219043 FORWARD LENGTH=496;; (*ITAG) Solyc04g082950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64007739-64009855 transcript_region:SL2.40ch04:64007739..64009855+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00022864g0012.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.2|0.5|6|339|358; (*GB) gi|358248178|ref|NP_001240088.1| (e_value=1e-171) uncharacterized protein LOC100786260 [Glycine max];; (*SWP) sp|P07370|CB2B_SOLLC (e_value=5e-66) Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1;; (*TAIR) AT1G76570.1 (e_value=8e-170) | Symbols: | Chlorophyll A-B binding family protein | chr1:28729132-28730754 FORWARD LENGTH=327;; (*ITAG) Solyc04g082920.2.1 (e_value=1e-127) genomic_reference:SL2.40ch04 gene_region:63995764-64004406 transcript_region:SL2.40ch04:63995764..64004406+ go_terms:GO:0031409,GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB2_PHYPA); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0031409,GO:0016168 NbS00022864g0011.1 protein AED:0.26 eAED:0.30 QI:0|1|0|1|1|0.5|2|0|327; (*GB) gi|224086138|ref|XP_002307829.1| (e_value=1e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT1G20990.1 (e_value=5e-68) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr1:7330524-7331946 REVERSE LENGTH=319;; (*ITAG) Solyc04g082940.2.1 (e_value=2e-161) genomic_reference:SL2.40ch04 gene_region:64004833-64006103 transcript_region:SL2.40ch04:64004833..64006103- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *-*- Q9LRV1_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00010302g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|0.85|0.87|8|302|268; (*GB) gi|142942404|gb|ABO92979.1| (e_value=2e-136) putative CAAX amino terminal protease [Solanum tuberosum];; (*TAIR) AT1G14270.1 (e_value=8e-71) | Symbols: | CAAX amino terminal protease family protein | chr1:4875099-4877195 REVERSE LENGTH=353;; (*ITAG) Solyc05g007500.2.1 (e_value=4e-136) genomic_reference:SL2.40ch05 gene_region:2058219-2062067 transcript_region:SL2.40ch05:2058219..2062067+ go_terms:GO:0016020 functional_description:"CAAX amino terminal protease family protein (AHRD V1 ***- B6T405_MAIZE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00005051g0011.1 protein AED:0.34 eAED:0.39 QI:24|0.33|0.25|0.75|0|0.25|4|0|59 NbS00005051g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.4|0.8|1|1|5|0|124; (*GB) gi|359492513|ref|XP_002283694.2| (e_value=1e-49) PREDICTED: MADS-box transcription factor 27 [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=3e-39) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.1 (e_value=2e-34) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc12g088090.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62014329-62019387 transcript_region:SL2.40ch12:62014329..62019387+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 *-*- Q9M2M4_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00005051g0008.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|85; (*GB) gi|222628999|gb|EEE61131.1| (e_value=2e-34) hypothetical protein OsJ_15063 [Oryza sativa Japonica Group];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=3e-34) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.2 (e_value=3e-34) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=239;; (*ITAG) Solyc02g091550.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00056457g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|156 NbS00060898g0001.1 protein AED:0.00 eAED:0.00 QI:195|1|1|1|0|0.33|3|490|70; (*GB) gi|18402394|ref|NP_565702.1| (e_value=2e-23) E3 ubiquitin protein ligase DRIP2 [Arabidopsis thaliana];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=6e-25) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=5e-26) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc06g084040.2.1 (e_value=6e-34) genomic_reference:SL2.40ch06 gene_region:45588705-45594967 transcript_region:SL2.40ch06:45588705..45594967- go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00010266g0009.1 protein AED:0.22 eAED:0.22 QI:413|1|1|1|0.83|0.85|7|344|342; (*GB) gi|225441702|ref|XP_002282897.1| (e_value=1e-100) PREDICTED: transcription factor bHLH60 [Vitis vinifera];; (*SWP) sp|Q8VZ02|BH048_ARATH (e_value=3e-67) Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1;; (*TAIR) AT3G57800.2 (e_value=1e-72) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21408034-21411321 REVERSE LENGTH=379;; (*ITAG) Solyc10g079070.1.1 (e_value=3e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60025990-60030733 transcript_region:SL2.40ch10:60025990..60030733+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00010266g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.5|0.66|3|380|314; (*GB) gi|224137954|ref|XP_002322693.1| (e_value=2e-170) predicted protein [Populus trichocarpa];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=7e-12) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G57790.1 (e_value=7e-164) | Symbols: | Pectin lyase-like superfamily protein | chr3:21405387-21407088 REVERSE LENGTH=490;; (*ITAG) Solyc03g051770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:18737534-18747386 transcript_region:SL2.40ch03:18737534..18747386+ functional_description:"Polygalacturonase-like protein Glycoside hydrolase family 28 (AHRD V1 **-- A5FF89_FLAJ1); contains Interpro domain(s) IPR012334 Pectin lyase fold "; NbS00010266g0012.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|175; (*ITAG) Solyc07g019640.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:12619514-12621171 transcript_region:SL2.40ch07:12619514..12621171- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00010266g0011.1 protein AED:0.55 eAED:0.74 QI:0|0|0|0.75|0|0.25|4|0|128 NbS00057286g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.81|0.83|1|1|1|12|613|503; (*GB) gi|225430021|ref|XP_002284175.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267889 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=2e-167) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc08g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54597447-54603198 transcript_region:SL2.40ch08:54597447..54603198+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00009922g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|479; (*GB) gi|255563602|ref|XP_002522803.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q94BZ5|HSFA5_ARATH (e_value=6e-163) Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1;; (*TAIR) AT4G13980.1 (e_value=5e-164) | Symbols: AT-HSFA5, HSFA5 | winged-helix DNA-binding transcription factor family protein | chr4:8077519-8079247 REVERSE LENGTH=466;; (*ITAG) Solyc12g098520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64340677-64344407 transcript_region:SL2.40ch12:64340677..64344407- go_terms:GO:0005634 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00015651g0015.1 protein AED:0.11 eAED:0.11 QI:50|0.5|0.6|1|0.75|0.6|5|328|436; (*GB) gi|81074755|gb|ABB55373.1| (e_value=0.0) polygalacturonase-like protein-like [Solanum tuberosum];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=3e-135) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G16850.1 (e_value=3e-176) | Symbols: | Pectin lyase-like superfamily protein | chr3:5748692-5750981 FORWARD LENGTH=455;; (*ITAG) Solyc06g009790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3809535-3814061 transcript_region:SL2.40ch06:3809535..3814061- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00015651g0016.1 protein AED:0.00 eAED:0.00 QI:110|1|1|1|0|0|7|131|200; (*GB) gi|356505627|ref|XP_003521591.1| (e_value=9e-50) PREDICTED: uncharacterized protein LOC100802379 [Glycine max];; (*TAIR) AT1G02610.1 (e_value=5e-35) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:553181-555854 REVERSE LENGTH=221;; (*ITAG) Solyc01g079530.2.1 (e_value=9e-59) genomic_reference:SL2.40ch01 gene_region:71102398-71104995 transcript_region:SL2.40ch01:71102398..71104995- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH6 (AHRD V1 *--- C1HD92_PARBA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00015651g0004.1 protein AED:0.05 eAED:0.05 QI:255|0.75|0.8|1|1|1|5|604|179 NbS00015651g0017.1 protein AED:0.13 eAED:0.13 QI:701|0.94|0.94|1|0.94|0.89|19|358|952; (*GB) gi|334855489|gb|AEH16636.1| (e_value=0.0) kinesin-like protein [Nicotiana tabacum];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G47500.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983;; (*ITAG) Solyc06g009780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3783983-3789999 transcript_region:SL2.40ch06:3783983..3789999+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00014306g0004.1 protein AED:0.31 eAED:0.38 QI:25|0.6|0.33|1|0.4|0.66|6|205|188; (*GB) gi|225448751|ref|XP_002281489.1| (e_value=9e-64) PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera];; (*TAIR) AT2G37290.1 (e_value=3e-37) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:15656935-15661335 REVERSE LENGTH=882;; (*ITAG) Solyc04g009560.2.1 (e_value=5e-89) genomic_reference:SL2.40ch04 gene_region:2961142-2970580 transcript_region:SL2.40ch04:2961142..2970580- go_terms:GO:0005622 functional_description:"TBC1 domain family member 8B (AHRD V1 *--- B9A6K5_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00044189g0003.1 protein AED:0.03 eAED:0.03 QI:36|1|0.66|1|0.5|1|3|0|209; (*GB) gi|255539104|ref|XP_002510617.1| (e_value=3e-96) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54TH9|GACY_DICDI (e_value=5e-12) Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1;; (*TAIR) AT4G35750.1 (e_value=3e-90) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr4:16940865-16941674 REVERSE LENGTH=202;; (*ITAG) Solyc04g082050.2.1 (e_value=4e-138) genomic_reference:SL2.40ch04 gene_region:63447153-63449044 transcript_region:SL2.40ch04:63447153..63449044+ functional_description:"Cellular retinaldehyde-binding/triple function C-terminal (AHRD V1 **-- B6SN40_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00000059g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|212274771|ref|NP_001130104.1| (e_value=3e-34) uncharacterized protein LOC100191197 precursor [Zea mays];; (*SWP) sp|Q9LTW9|FLA14_ARATH (e_value=4e-29) Fasciclin-like arabinogalactan protein 14 OS=Arabidopsis thaliana GN=FLA14 PE=2 SV=1;; (*TAIR) AT3G12660.1 (e_value=3e-30) | Symbols: FLA14 | FASCICLIN-like arabinogalactan protein 14 precursor | chr3:4019060-4019827 FORWARD LENGTH=255;; (*ITAG) Solyc08g006300.2.1 (e_value=2e-62) genomic_reference:SL2.40ch08 gene_region:964361-965748 transcript_region:SL2.40ch08:964361..965748+ functional_description:"Fasciclin-like arabinogalactan protein 17 (AHRD V1 *-*- A9XTM2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00057584g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|719; (*GB) gi|33340511|gb|AAQ14851.1|AF321137_1 (e_value=0.0) arginine decarboxylase [Nicotiana tabacum];; (*SWP) sp|Q43075|SPE1_PEA (e_value=0.0) Arginine decarboxylase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G34710.2 (e_value=0.0) | Symbols: ADC2, SPE2, ATADC2 | arginine decarboxylase 2 | chr4:16560315-16562450 REVERSE LENGTH=711;; (*ITAG) Solyc10g054440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50892473-50894596 transcript_region:SL2.40ch10:50892473..50894596- go_terms:GO:0008792 functional_description:"Arginine decarboxylase (AHRD V1 **** Q5F307_SOLLC); contains Interpro domain(s) IPR002985 Arginine decarboxylase "; GO:0008792 NbS00009260g0004.1 protein AED:0.29 eAED:0.29 QI:502|0.95|0.95|0.95|0.76|0.77|22|0|702; (*GB) gi|225461512|ref|XP_002285125.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258981 isoform 1 [Vitis vinifera];; (*SWP) sp|O61122|SVKA_DICDI (e_value=2e-124) Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1;; (*TAIR) AT3G15220.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:5126899-5131752 REVERSE LENGTH=690;; (*ITAG) Solyc07g062940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62782190-62797981 transcript_region:SL2.40ch07:62782190..62797981- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023374g0008.1 protein AED:0.11 eAED:0.11 QI:61|0.6|0.5|1|0|0|6|182|322; (*GB) gi|1039355|emb|CAA63093.1| (e_value=2e-127) alcohol dehydrogenase [Solanum tuberosum];; (*SWP) sp|P48977|ADH_MALDO (e_value=7e-70) Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1;; (*TAIR) AT5G24760.1 (e_value=6e-67) | Symbols: | GroES-like zinc-binding dehydrogenase family protein | chr5:8495035-8497245 REVERSE LENGTH=381;; (*ITAG) Solyc11g071290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51903072-51909699 transcript_region:SL2.40ch11:51903072..51909699+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase (AHRD V1 **** Q43169_SOLTU); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00023374g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|255538784|ref|XP_002510457.1| (e_value=3e-23) ATP-dependent peptidase, putative [Ricinus communis];; (*TAIR) AT1G75460.1 (e_value=2e-25) | Symbols: | ATP-dependent protease La (LON) domain protein | chr1:28327986-28328822 FORWARD LENGTH=278;; (*ITAG) Solyc04g080870.1.1 (e_value=4e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:62519519-62519779 transcript_region:SL2.40ch04:62519519..62519779+ functional_description:"Peptidase S16 lon domain protein (AHRD V1 ***- D7E103_NOSA0)"; NbS00023374g0007.1 protein AED:0.04 eAED:0.05 QI:140|0.83|0.84|1|0.75|0.69|13|281|1039; (*GB) gi|16326133|dbj|BAB70510.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=2e-94) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT4G32730.2 (e_value=4e-94) | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | Homeodomain-like protein | chr4:15791039-15795643 FORWARD LENGTH=995;; (*ITAG) Solyc11g071300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51910332-51917668 transcript_region:SL2.40ch11:51910332..51917668- go_terms:GO:0003677,GO:0045449 functional_description:"Myb (AHRD V1 ***- Q948S6_TOBAC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00010546g0012.1 protein AED:0.14 eAED:0.14 QI:277|0.66|0.75|0.75|0|0|4|1806|58 NbS00010546g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|0|0|2|0|74; (*GB) gi|224139406|ref|XP_002323096.1| (e_value=4e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFG1|Y3359_ARATH (e_value=6e-23) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 OS=Arabidopsis thaliana GN=At3g53590 PE=3 SV=2;; (*TAIR) AT5G01950.1 (e_value=1e-27) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:365040-369532 REVERSE LENGTH=951;; (*ITAG) Solyc09g055180.2.1 (e_value=1e-28) genomic_reference:SL2.40ch09 gene_region:32511751-32522286 transcript_region:SL2.40ch09:32511751..32522286+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00010546g0014.1 protein AED:0.31 eAED:0.31 QI:0|0.45|0.41|0.91|0.45|0.41|12|0|597; (*GB) gi|296085838|emb|CBI31162.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT1G06840.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc09g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:32511751-32522286 transcript_region:SL2.40ch09:32511751..32522286+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00010546g0003.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|118483602|gb|ABK93697.1| (e_value=2e-135) unknown [Populus trichocarpa];; (*TAIR) AT3G08640.1 (e_value=9e-134) | Symbols: | Protein of unknown function (DUF3411) | chr3:2622992-2624005 FORWARD LENGTH=337;; (*ITAG) Solyc09g031940.1.1 (e_value=3e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:24424858-24425931 transcript_region:SL2.40ch09:24424858..24425931+ functional_description:"Chloroplast lumen common protein family-like protein (AHRD V1 ***- Q7F0B4_ORYSJ)"; NbS00010546g0013.1 protein AED:0.30 eAED:0.31 QI:0|1|0.85|1|1|1|7|0|282; (*GB) gi|224069102|ref|XP_002326275.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVI3|QKIL3_ARATH (e_value=6e-170) KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1;; (*TAIR) AT2G38610.2 (e_value=5e-171) | Symbols: | RNA-binding KH domain-containing protein | chr2:16147552-16149638 REVERSE LENGTH=286;; (*ITAG) Solyc09g031930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:24228433-24236165 transcript_region:SL2.40ch09:24228433..24236165+ go_terms:GO:0005515,GO:0003727 functional_description:"KH domain containing RNA binding signal transduction associated 1 (AHRD V1 *--* Q29RQ2_BOVIN); contains Interpro domain(s) IPR004088 K Homology, type 1 "; GO:0005515,GO:0003727 NbS00003246g0006.1 protein AED:0.08 eAED:0.08 QI:162|1|1|1|0.85|1|8|319|283; (*GB) gi|225441724|ref|XP_002283060.1| (e_value=2e-140) PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera];; (*SWP) sp|Q9FL54|DNAJ6_ARATH (e_value=5e-125) Chaperone protein dnaJ 6 OS=Arabidopsis thaliana GN=ATJ6 PE=1 SV=1;; (*TAIR) AT5G06910.1 (e_value=4e-126) | Symbols: ATJ6 | J-domain protein 6 | chr5:2140598-2142525 FORWARD LENGTH=284;; (*ITAG) Solyc10g079090.1.1 (e_value=3e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60035807-60039291 transcript_region:SL2.40ch10:60035807..60039291+ go_terms:GO:0030544 functional_description:"Chaperone protein dnaJ 6 (AHRD V1 ***- B6TT74_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544 NbS00033472g0003.1 protein AED:0.28 eAED:0.30 QI:0|0.16|0.07|0.76|1|1|13|0|1849; (*GB) gi|6671484|gb|AAC49301.2| (e_value=0.0) phytochrome F [Solanum lycopersicum];; (*SWP) sp|Q10CQ8|PHYC_ORYSJ (e_value=0.0) Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1;; (*TAIR) AT5G35840.1 (e_value=0.0) | Symbols: PHYC | phytochrome C | chr5:14008049-14011619 FORWARD LENGTH=1111;; (*ITAG) Solyc07g045480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55934576-55945063 transcript_region:SL2.40ch07:55934576..55945063+ go_terms:GO:0005515,GO:0004673 functional_description:"Phytochrome F"; GO:0005515,GO:0004673 NbS00033472g0006.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|0|0|3|0|189; (*GB) gi|224085373|ref|XP_002307558.1| (e_value=8e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT2G30890.1 (e_value=5e-27) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr2:13147774-13149663 FORWARD LENGTH=257;; (*ITAG) Solyc07g056230.2.1 (e_value=3e-60) genomic_reference:SL2.40ch07 gene_region:61402318-61404293 transcript_region:SL2.40ch07:61402318..61404293+ functional_description:"Cytochrome B561-related protein (AHRD V1 **-- Q1H8M6_BETVU); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00008213g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|359476767|ref|XP_003631884.1| (e_value=2e-41) PREDICTED: auxin-induced protein X10A-like [Vitis vinifera];; (*SWP) sp|P33079|A10A5_SOYBN (e_value=1e-26) Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=1e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc10g054760.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00008213g0006.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|0|0|2|0|92; (*GB) gi|225430969|ref|XP_002271924.1| (e_value=4e-34) PREDICTED: auxin-induced protein 10A5 [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=4e-24) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21200.1 (e_value=5e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9084039-9084299 REVERSE LENGTH=86;; (*ITAG) Solyc10g054760.1.1 (e_value=1e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00008213g0004.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|67; (*GB) gi|359476767|ref|XP_003631884.1| (e_value=4e-22) PREDICTED: auxin-induced protein X10A-like [Vitis vinifera];; (*TAIR) AT4G34810.1 (e_value=7e-16) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16599104-16599421 FORWARD LENGTH=105;; (*ITAG) Solyc10g054760.1.1 (e_value=5e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00016520g0001.1 protein AED:0.16 eAED:0.16 QI:210|0.66|0.75|1|1|1|4|515|246; (*GB) gi|225452482|ref|XP_002278739.1| (e_value=1e-91) PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera];; (*TAIR) AT3G01490.1 (e_value=9e-87) | Symbols: | Protein kinase superfamily protein | chr3:191095-193258 REVERSE LENGTH=411;; (*ITAG) Solyc12g062280.1.1 (e_value=3e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49627152-49631145 transcript_region:SL2.40ch12:49627152..49631145+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0006468 NbS00016520g0009.1 protein AED:0.08 eAED:0.08 QI:0|1|0.87|1|1|1|8|546|386; (*GB) gi|224133476|ref|XP_002321577.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=0.0) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=0.0) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g062290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49709104-49714242 transcript_region:SL2.40ch12:49709104..49714242- go_terms:GO:0004252 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0004252 NbS00057737g0005.1 protein AED:0.17 eAED:0.17 QI:85|1|1|1|1|1|4|374|300; (*GB) gi|118481085|gb|ABK92496.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8LDW9|XTH9_ARATH (e_value=2e-161) Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2;; (*TAIR) AT4G03210.1 (e_value=2e-162) | Symbols: XTH9 | xyloglucan endotransglucosylase/hydrolase 9 | chr4:1416019-1417197 FORWARD LENGTH=290;; (*ITAG) Solyc07g052980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58724756-58726704 transcript_region:SL2.40ch07:58724756..58726704+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRH8_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbC24195834g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|225735176|gb|ACO25565.1| (e_value=4e-77) protein kinase-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q9FN92|Y5597_ARATH (e_value=3e-70) Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=1 SV=1;; (*TAIR) AT5G59700.1 (e_value=2e-71) | Symbols: | Protein kinase superfamily protein | chr5:24052613-24055102 REVERSE LENGTH=829;; (*ITAG) Solyc06g005230.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:247453-248577 transcript_region:SL2.40ch06:247453..248577- go_terms:GO:0005515,GO:0004674 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0005515,GO:0004674 NbS00035335g0012.1 protein AED:0.17 eAED:0.18 QI:0|0.66|0.5|1|0.33|0.25|4|126|164; (*GB) gi|224125034|ref|XP_002319486.1| (e_value=2e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62550.1 (e_value=1e-39) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:23136194-23137074 FORWARD LENGTH=162;; (*ITAG) Solyc01g100370.2.1 (e_value=6e-85) genomic_reference:SL2.40ch01 gene_region:82186051-82188666 transcript_region:SL2.40ch01:82186051..82188666+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B6SNQ1_MAIZE); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00035335g0010.1 protein AED:0.36 eAED:0.36 QI:30|0.33|0|0.85|0.5|0.28|7|375|447; (*GB) gi|224125030|ref|XP_002319485.1| (e_value=3e-76) histidine kinase cytokinin receptor [Populus trichocarpa];; (*SWP) sp|O22267|CKI1_ARATH (e_value=9e-63) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=7e-64) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=6e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00035335g0013.1 protein AED:0.67 eAED:0.67 QI:12|0|0.5|0.5|1|1|2|0|78 NbS00035335g0017.1 protein AED:0.17 eAED:0.17 QI:108|1|1|1|0.92|0.86|15|103|412; (*GB) gi|11131769|sp|Q40401.1|CALR_NICPL (e_value=0.0) RecName: Full=Calreticulin; Flags: Precursor;; (*SWP) sp|Q40401|CALR_NICPL (e_value=0.0) Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1;; (*TAIR) AT1G09210.1 (e_value=0.0) | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2973217-2976655 REVERSE LENGTH=424;; (*ITAG) Solyc01g100380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82188573-82192180 transcript_region:SL2.40ch01:82188573..82192180- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00047700g0014.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|350537805|ref|NP_001234311.1| (e_value=2e-42) uncharacterized protein LOC778362 [Solanum lycopersicum];; (*TAIR) AT5G02160.1 (e_value=4e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:426392-427024 FORWARD LENGTH=129;; (*ITAG) Solyc10g086570.2.1 (e_value=3e-45) genomic_reference:SL2.40ch10 gene_region:64684179-64684888 transcript_region:SL2.40ch10:64684179..64684888- go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 **-- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00047700g0013.1 protein AED:0.19 eAED:0.19 QI:131|0.6|0.63|1|0.8|0.54|11|307|726; (*GB) gi|12643758|sp|Q40565.1|RCA2_TOBAC (e_value=0.0) RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2; Flags: Precursor;; (*SWP) sp|Q40565|RCA2_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1;; (*TAIR) AT2G39730.3 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441;; (*ITAG) Solyc10g086580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64688483-64690961 transcript_region:SL2.40ch10:64688483..64690961- go_terms:GO:0005524 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 ***- Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524 NbS00047700g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|255582868|ref|XP_002532206.1| (e_value=9e-35) NOI, putative [Ricinus communis];; (*TAIR) AT2G04410.1 (e_value=9e-30) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73;; (*ITAG) Solyc07g045340.2.1 (e_value=8e-47) genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00044977g0005.1 protein AED:0.14 eAED:0.14 QI:144|0.5|0.42|1|0.5|0.42|7|215|293; (*GB) gi|156763848|emb|CAO99126.1| (e_value=7e-137) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=2e-115) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=5e-108) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011340.1.1 (e_value=3e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00055856g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|224140297|ref|XP_002323519.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09290.1 (e_value=9e-15) | Symbols: TAC1 | telomerase activator1 | chr3:2856141-2856659 FORWARD LENGTH=172;; (*ITAG) Solyc09g011110.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4451097-4451645 transcript_region:SL2.40ch09:4451097..4451645- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTZ1_ZEAMP); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00010925g0003.1 protein AED:0.21 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|356532812|ref|XP_003534964.1| (e_value=8e-13) PREDICTED: uncharacterized protein LOC100782725 [Glycine max];; (*TAIR) AT3G43110.1 (e_value=2e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20790.1); Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15091710-15092285 REVERSE LENGTH=191; NbS00010925g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.14|1|1|7|0|353; (*GB) gi|218201047|gb|EEC83474.1| (e_value=3e-16) hypothetical protein OsI_28985 [Oryza sativa Indica Group];; (*SWP) sp|Q9LIE5|FHY3_ARATH (e_value=5e-15) Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1;; (*TAIR) AT3G22170.2 (e_value=4e-16) | Symbols: FHY3 | far-red elongated hypocotyls 3 | chr3:7822359-7825414 REVERSE LENGTH=839;; (*ITAG) Solyc07g042600.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53400416-53400979 transcript_region:SL2.40ch07:53400416..53400979+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00006210g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|225451346|ref|XP_002279607.1| (e_value=3e-34) PREDICTED: sec-independent protein translocase protein TatA [Vitis vinifera];; (*SWP) sp|Q5N2J3|TATA_SYNP6 (e_value=2e-19) Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1;; (*TAIR) AT5G28750.1 (e_value=9e-31) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=5e-42) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00061450g0003.1 protein AED:0.30 eAED:0.30 QI:0|1|0.75|1|1|1|4|0|155; (*GB) gi|295918069|gb|ADG60253.1| (e_value=8e-55) stigma/style cell cycle inhibitor [Nicotiana tabacum];; (*TAIR) AT1G79200.1 (e_value=3e-31) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29794404-29795711 FORWARD LENGTH=159;; (*ITAG) Solyc05g008750.2.1 (e_value=4e-47) genomic_reference:SL2.40ch05 gene_region:2988398-2991740 transcript_region:SL2.40ch05:2988398..2991740+ functional_description:"Splicing factor arginine/serine-rich 12 (AHRD V1 *--- B6T1Y2_MAIZE)"; NbS00055538g0001.1 protein AED:0.32 eAED:0.32 QI:253|1|0.85|1|1|1|7|0|325; (*GB) gi|296087710|emb|CBI34966.3| (e_value=2e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SQK3|EM506_ARATH (e_value=2e-97) Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1;; (*TAIR) AT5G40160.1 (e_value=2e-98) | Symbols: EMB139, EMB506 | Ankyrin repeat family protein | chr5:16062726-16064301 REVERSE LENGTH=315;; (*ITAG) Solyc09g009290.2.1 (e_value=8e-159) genomic_reference:SL2.40ch09 gene_region:2668872-2673354 transcript_region:SL2.40ch09:2668872..2673354+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein (AHRD V1 **-- B4F7X1_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00028683g0003.1 protein AED:0.14 eAED:0.14 QI:306|1|0.66|1|1|1|3|0|598; (*GB) gi|225455386|ref|XP_002278061.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Vitis vinifera];; (*SWP) sp|Q9FK05|PME61_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1;; (*TAIR) AT5G53370.1 (e_value=0.0) | Symbols: ATPMEPCRF, PMEPCRF | pectin methylesterase PCR fragment F | chr5:21649683-21651530 REVERSE LENGTH=587;; (*ITAG) Solyc03g083360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46733407-46736826 transcript_region:SL2.40ch03:46733407..46736826- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9IDR8_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00003596g0001.1 protein AED:0.12 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|359483990|ref|XP_002271093.2| (e_value=2e-46) PREDICTED: uncharacterized protein LOC100259675 [Vitis vinifera];; (*SWP) sp|P0DH64|Y4891_SELML (e_value=2e-11) FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1;; (*TAIR) AT1G30800.1 (e_value=3e-32) | Symbols: | Fasciclin-like arabinogalactan family protein | chr1:10936995-10937714 FORWARD LENGTH=239;; (*ITAG) Solyc11g072680.1.1 (e_value=1e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52975420-52976622 transcript_region:SL2.40ch11:52975420..52976622+ functional_description:"Fasciclin-like arabinogalactan protein 21 (AHRD V1 *-*- FLA21_ARATH); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00003596g0009.1 protein AED:0.20 eAED:0.20 QI:618|0.91|0.92|1|0.75|0.68|25|119|960; (*GB) gi|255582071|ref|XP_002531832.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q2RBR1|PHT1B_ORYSJ (e_value=0.0) Phototropin-1B OS=Oryza sativa subsp. japonica GN=PHOT1B PE=1 SV=2;; (*TAIR) AT5G58140.1 (e_value=0.0) | Symbols: PHOT2, NPL1 | phototropin 2 | chr5:23524771-23529993 FORWARD LENGTH=915;; (*ITAG) Solyc11g072710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52992096-53001851 transcript_region:SL2.40ch11:52992096..53001851+ go_terms:GO:0000160,GO:0006468,GO:0007165,GO:0006355 functional_description:"Protein kinase (AHRD V1 *-*- Q7DMT0_PEA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0007165,GO:0006355 NbS00003596g0013.1 protein AED:0.36 eAED:0.47 QI:0|0.72|0.75|1|0.81|0.75|12|0|283; (*GB) gi|350534486|ref|NP_001233887.1| (e_value=1e-154) 3-desoxy-D-manno octulosonic acid-8-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9AV97|KDSA_ARATH (e_value=1e-147) 2-dehydro-3-deoxyphosphooctonate aldolase OS=Arabidopsis thaliana GN=KDSA PE=2 SV=2;; (*TAIR) AT1G79500.4 (e_value=1e-148) | Symbols: AtkdsA1 | Aldolase-type TIM barrel family protein | chr1:29903604-29905989 FORWARD LENGTH=290;; (*ITAG) Solyc11g072690.1.1 (e_value=2e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52977765-52982804 transcript_region:SL2.40ch11:52977765..52982804+ go_terms:GO:0008152,GO:0009058,GO:0005737 functional_description:"2-dehydro-3-deoxyphosphooctonate aldolase (AHRD V1 ***- B4F7V1_MAIZE); contains Interpro domain(s) IPR006269 3-deoxy-8-phosphooctulonate synthase "; GO:0008152,GO:0009058,GO:0005737 NbS00003596g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|0|0.25|4|0|474; (*GB) gi|255582073|ref|XP_002531833.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT1G07850.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr1:2426745-2428719 FORWARD LENGTH=541;; (*ITAG) Solyc11g072700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52983862-52985655 transcript_region:SL2.40ch11:52983862..52985655- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00017082g0005.1 protein AED:0.21 eAED:0.23 QI:0|1|0.5|1|1|1|2|288|411; (*GB) gi|255539180|ref|XP_002510655.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G76250.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:28606561-28608942 REVERSE LENGTH=434;; (*ITAG) Solyc12g094550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63087125-63089784 transcript_region:SL2.40ch12:63087125..63089784- functional_description:"AT1G76250-like protein (Fragment) (AHRD V1 *-*- D6PP03_9BRAS)"; NbS00017082g0101.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|204 NbS00017082g0108.1 protein AED:0.06 eAED:0.11 QI:0|0|0|1|0|0|2|0|277 NbS00017082g0109.1 protein AED:0.11 eAED:0.20 QI:0|0|0|1|0|0|3|0|186 NbS00028035g0009.1 protein AED:0.21 eAED:0.21 QI:47|0.75|0.69|0.92|0.83|0.84|13|179|657; (*GB) gi|359484119|ref|XP_002267202.2| (e_value=0.0) PREDICTED: cell division control protein 48 homolog B-like [Vitis vinifera];; (*SWP) sp|Q9ZPR1|CD48B_ARATH (e_value=0.0) Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1;; (*TAIR) AT2G03670.1 (e_value=0.0) | Symbols: CDC48B | cell division cycle 48B | chr2:1117595-1120361 FORWARD LENGTH=603;; (*ITAG) Solyc05g012190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5456884-5462327 transcript_region:SL2.40ch05:5456884..5462327- go_terms:GO:0004176 functional_description:"AAA family ATPase CDC48 subfamily (AHRD V1 **-- A8AAC3_IGNH4); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00028035g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.73|1|0.78|0.8|15|422|675; (*GB) gi|297738097|emb|CBI27298.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BFS9|ASND1_MOUSE (e_value=1e-91) Asparagine synthetase domain-containing protein 1 OS=Mus musculus GN=Asnsd1 PE=2 SV=1;; (*TAIR) AT2G03667.1 (e_value=0.0) | Symbols: | Asparagine synthase family protein | chr2:1114179-1117281 FORWARD LENGTH=610;; (*ITAG) Solyc05g012200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5462850-5468978 transcript_region:SL2.40ch05:5462850..5468978+ go_terms:GO:0042802 functional_description:"Asparagine synthase family protein expressed (AHRD V1 ***- Q2QN88_ORYSJ); contains Interpro domain(s) IPR001962 Asparagine synthase "; GO:0042802 NbS00022699g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|224131718|ref|XP_002328091.1| (e_value=8e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=5e-69) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT1G02335.1 (e_value=1e-34) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc11g068570.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50334139-50334759 transcript_region:SL2.40ch11:50334139..50334759- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00022699g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|224131718|ref|XP_002328091.1| (e_value=8e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=5e-69) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT1G02335.1 (e_value=1e-34) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc11g068570.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50334139-50334759 transcript_region:SL2.40ch11:50334139..50334759- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00022699g0012.1 protein AED:0.30 eAED:0.31 QI:178|0|0.5|1|0|0|2|0|114 NbS00022699g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|225464910|ref|XP_002273491.1| (e_value=2e-93) PREDICTED: germin-like protein 9-3 [Vitis vinifera];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=1e-68) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT3G62020.1 (e_value=1e-37) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc11g068590.1.1 (e_value=1e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50336707-50337318 transcript_region:SL2.40ch11:50336707..50337318- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00022699g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|225464910|ref|XP_002273491.1| (e_value=2e-93) PREDICTED: germin-like protein 9-3 [Vitis vinifera];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=1e-68) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT3G62020.1 (e_value=1e-37) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc11g068590.1.1 (e_value=1e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50336707-50337318 transcript_region:SL2.40ch11:50336707..50337318- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00003169g0005.1 protein AED:0.09 eAED:0.09 QI:246|1|1|1|1|1|5|312|178; (*GB) gi|21595695|gb|AAM66124.1| (e_value=6e-75) unknown [Arabidopsis thaliana];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=2e-76) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=2e-77) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc01g005390.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:276161-277987 transcript_region:SL2.40ch01:276161..277987+ go_terms:GO:0008486 functional_description:"Nudix hydrolase 4 (AHRD V1 ***- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00039415g0006.1 protein AED:0.23 eAED:0.23 QI:579|1|0.75|1|0.66|0.5|4|0|621; (*GB) gi|62867584|emb|CAI84657.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9M1Y3|SKI35_ARATH (e_value=0.0) F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1;; (*TAIR) AT2G44090.2 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:18238682-18240828 REVERSE LENGTH=582;; (*ITAG) Solyc08g015780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5497369-5503211 transcript_region:SL2.40ch08:5497369..5503211- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00004265g0010.1 protein AED:0.26 eAED:0.26 QI:150|0.4|0.33|1|0.4|0.5|6|0|344; (*ITAG) Solyc01g073870.2.1 (e_value=4e-115) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00036341g0011.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|1|1|3|0|467; (*GB) gi|224115192|ref|XP_002332184.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=1e-127) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=3e-122) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc02g069600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34020115-34022726 transcript_region:SL2.40ch02:34020115..34022726- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00036341g0012.1 protein AED:0.24 eAED:0.24 QI:146|1|1|1|0.75|0.66|9|313|291; (*GB) gi|225444159|ref|XP_002270662.1| (e_value=0.0) PREDICTED: coatomer subunit epsilon-1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SA78|COPE1_ARATH (e_value=1e-179) Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1;; (*TAIR) AT1G30630.1 (e_value=0.0) | Symbols: | Coatomer epsilon subunit | chr1:10858546-10860173 REVERSE LENGTH=292;; (*ITAG) Solyc02g030250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16152752-16160121 transcript_region:SL2.40ch02:16152752..16160121- go_terms:GO:0005515 functional_description:"Coatomer protein epsilon subunit family protein (AHRD V1 ***- D7KFM4_ARALY); contains Interpro domain(s) IPR006822 Coatomer, epsilon subunit "; GO:0005515 NbS00000772g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|57013968|ref|YP_173440.1| (e_value=3e-55) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00000772g0008.1 protein AED:0.70 eAED:0.71 QI:0|0|0|0.4|1|1|5|0|119 NbS00000772g0009.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=4e-52) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=1e-53) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=3e-39) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=4e-53) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00000772g0013.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|0|0|2|0|137; (*GB) gi|57013971|ref|YP_173443.1| (e_value=1e-72) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00000772g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|133; (*GB) gi|57013900|ref|YP_173374.1| (e_value=3e-35) hypothetical protein NitaMp027 [Nicotiana tabacum];; (*ITAG) Solyc10g048060.1.1 (e_value=8e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:39359054-39359497 transcript_region:SL2.40ch10:39359054..39359497- functional_description:"Uncharacterized mitochondrial protein AtMg00030 (AHRD V1 *-*- M030_ARATH)"; NbS00000772g0012.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|0|0|3|0|126; (*GB) gi|57013969|ref|YP_173441.1| (e_value=9e-31) hypothetical protein NitaMp103 [Nicotiana tabacum]; NbS00000772g0010.1 protein AED:0.20 eAED:0.32 QI:53|0|0|1|0|0|3|0|101; (*ITAG) Solyc11g028150.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00004188g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|357446425|ref|XP_003593490.1| (e_value=1e-12) hypothetical protein MTR_2g012750 [Medicago truncatula];; (*ITAG) Solyc03g006600.1.1 (e_value=6e-92) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:1179806-1180825 transcript_region:SL2.40ch03:1179806..1180825- functional_description:"Unknown Protein (AHRD V1)"; NbS00004188g0005.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.33|1|0.33|3|0|72 NbS00004188g0004.1 protein AED:0.22 eAED:0.22 QI:37|0|0|1|0|0|2|0|60; (*GB) gi|351653865|ref|YP_004891590.1| (e_value=4e-19) rpoC2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|Q2MIB0|RPOC2_SOLLC (e_value=1e-20) DNA-directed RNA polymerase subunit beta'' OS=Solanum lycopersicum GN=rpoC2 PE=3 SV=1;; (*ITAG) Solyc08g028930.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21743100-21743318 transcript_region:SL2.40ch08:21743100..21743318- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW93_LIQST)"; NbS00001947g0009.1 protein AED:0.19 eAED:0.21 QI:0|0.64|0.66|0.93|0.64|0.66|15|280|854; (*GB) gi|350535513|ref|NP_001234454.1| (e_value=0.0) CTR1-like protein kinase [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=0.0) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=0.0) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc09g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2427384-2442527 transcript_region:SL2.40ch09:2427384..2442527+ go_terms:GO:0005515,GO:0004709 functional_description:"Protein kinase (AHRD V1 *-** Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004709 NbS00001947g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|454; (*GB) gi|350539978|ref|NP_001234854.1| (e_value=0.0) heat stress transcription factor A3 [Solanum lycopersicum];; (*SWP) sp|Q8GYY1|HSFA3_ARATH (e_value=1e-92) Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2;; (*TAIR) AT5G03720.1 (e_value=9e-94) | Symbols: AT-HSFA3, HSFA3 | heat shock transcription factor A3 | chr5:971913-973683 REVERSE LENGTH=412;; (*ITAG) Solyc09g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2445341-2448016 transcript_region:SL2.40ch09:2445341..2448016- go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 ***- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00009730g0002.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|1|1|2|0|196; (*GB) gi|188509941|gb|ACD56627.1| (e_value=7e-98) putative ABC transporter [Gossypium raimondii];; (*SWP) sp|Q9C8T1|AB1I_ARATH (e_value=5e-98) ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1;; (*TAIR) AT1G63270.1 (e_value=4e-99) | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229;; (*ITAG) Solyc12g010220.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3340222-3340911 transcript_region:SL2.40ch12:3340222..3340911+ go_terms:GO:0030288,GO:0017111,GO:0016887 functional_description:"Cytochrome c biogenesis ATP-binding export protein ccmA-like (AHRD V1 ***- B6U3M9_MAIZE); contains Interpro domain(s) IPR005895 ABC transporter, haem export, CcmA "; GO:0030288,GO:0017111,GO:0016887 NbS00009730g0005.1 protein AED:0.35 eAED:0.46 QI:0|0|0|0.5|1|1|4|0|303; (*GB) gi|125548923|gb|EAY94745.1| (e_value=2e-36) hypothetical protein OsI_16523 [Oryza sativa Indica Group];; (*SWP) sp|Q9ZUH1|Y2424_ARATH (e_value=6e-28) BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1;; (*TAIR) AT2G24240.1 (e_value=4e-29) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr2:10310838-10312163 FORWARD LENGTH=441;; (*ITAG) Solyc12g010100.1.1 (e_value=3e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3230800-3232131 transcript_region:SL2.40ch12:3230800..3232131+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 *-*- Q54EU5_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00004566g0004.1 protein AED:0.78 eAED:0.82 QI:0|0|0|0.33|0.8|0.83|6|0|115 NbS00004566g0005.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.33|0|0.33|3|0|184 NbS00004566g0116.1 protein AED:0.16 eAED:0.16 QI:20|0.5|0|1|0.5|0.33|3|0|347 NbS00004566g0115.1 protein AED:0.04 eAED:0.04 QI:292|1|1|1|0.5|0.33|3|460|498 NbS00004566g0114.1 protein AED:0.23 eAED:0.23 QI:165|0.81|0.83|1|0.45|0.58|12|582|635 NbS00004566g0118.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|1|0.5|2|0|117 NbS00007642g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.6|1|1|1|5|0|556; (*GB) gi|255539150|ref|XP_002510640.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|Q84P21|4CLL5_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2;; (*TAIR) AT1G20510.1 (e_value=0.0) | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:7103645-7105856 REVERSE LENGTH=546;; (*ITAG) Solyc12g094520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63076525-63080167 transcript_region:SL2.40ch12:63076525..63080167- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 ***- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00041432g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|0|0|2|0|75; (*ITAG) Solyc00g164580.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17840292-17841447 transcript_region:SL2.40ch00:17840292..17841447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041432g0001.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|125 NbS00011263g0008.1 protein AED:0.17 eAED:0.17 QI:19|0.33|0.28|1|0.16|0.42|7|93|798; (*GB) gi|359496521|ref|XP_002262970.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Vitis vinifera];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc04g058110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54372770-54376223 transcript_region:SL2.40ch04:54372770..54376223+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00010049g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|463; (*GB) gi|337733638|gb|AEI72268.1| (e_value=4e-159) leucine-rich repeat family protein [Citrus trifoliata];; (*SWP) sp|Q8W3M4|Y4744_ARATH (e_value=8e-119) Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1;; (*TAIR) AT3G19320.1 (e_value=1e-136) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6696395-6698073 REVERSE LENGTH=493;; (*ITAG) Solyc10g050110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:43292520-43293848 transcript_region:SL2.40ch10:43292520..43293848+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00010049g0001.1 protein AED:0.36 eAED:0.36 QI:425|0.85|0.75|1|0.85|0.87|8|0|280; (*GB) gi|171854669|dbj|BAG16524.1| (e_value=6e-79) C2 domain-containing protein [Capsicum chinense];; (*TAIR) AT4G34150.1 (e_value=2e-60) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:16355035-16356955 FORWARD LENGTH=247;; (*ITAG) Solyc10g050060.1.1 (e_value=8e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:43158899-43160904 transcript_region:SL2.40ch10:43158899..43160904- functional_description:"Elicitor-responsive protein 3 (AHRD V1 *--- B6U4Y1_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00001986g0030.1 protein AED:0.03 eAED:0.03 QI:0|0.6|0.5|1|0.8|0.66|6|87|1260; (*GB) gi|359483683|ref|XP_003633001.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-180) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=0.0) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc02g072400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00001986g0010.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|1|1|5|0|535; (*GB) gi|3183991|emb|CAA06414.1| (e_value=6e-164) P69F protein [Solanum lycopersicum];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=4e-75) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT2G05920.1 (e_value=4e-79) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc02g072330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36179426-36181612 transcript_region:SL2.40ch02:36179426..36181612- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001986g0027.1 protein AED:0.21 eAED:0.22 QI:81|0.45|0.16|0.91|0.54|0.41|12|0|1630; (*GB) gi|359483677|ref|XP_003633000.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-164) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-165) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g072400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00001986g0034.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0.14|7|0|801; (*GB) gi|350536267|ref|NP_001233982.1| (e_value=1e-176) subtilisin-like protease precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-56) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=3e-80) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc02g072330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36179426-36181612 transcript_region:SL2.40ch02:36179426..36181612- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001986g0029.1 protein AED:0.17 eAED:0.17 QI:30|0.77|0.9|1|0.66|0.6|10|289|559; (*GB) gi|297740524|emb|CBI30706.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGU5|Y5457_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1;; (*TAIR) AT5G45780.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:18566946-18569625 REVERSE LENGTH=614;; (*ITAG) Solyc02g072310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36173934-36178716 transcript_region:SL2.40ch02:36173934..36178716+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001986g0014.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|155 NbS00001986g0035.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|3|0|462; (*GB) gi|225426708|ref|XP_002275452.1| (e_value=5e-134) PREDICTED: subtilisin-like protease SDD1-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=6e-76) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=5e-77) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc02g072370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36186824-36188907 transcript_region:SL2.40ch02:36186824..36188907- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00007263g0001.1 protein AED:0.11 eAED:0.11 QI:256|0.85|0.86|0.93|0.85|0.86|15|0|482; (*GB) gi|224073774|ref|XP_002304166.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8TEQ8|PIGO_HUMAN (e_value=3e-81) GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=2 SV=3;; (*TAIR) AT5G17250.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00007263g0002.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.75|0.87|1|1|8|316|515; (*GB) gi|359483081|ref|XP_002273145.2| (e_value=1e-165) PREDICTED: GPI ethanolamine phosphate transferase 3-like [Vitis vinifera];; (*TAIR) AT5G17250.1 (e_value=4e-121) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00007263g0007.1 protein AED:0.14 eAED:0.16 QI:292|0.86|0.75|1|0.93|0.93|16|0|797; (*GB) gi|225439783|ref|XP_002273633.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248309 [Vitis vinifera];; (*SWP) sp|Q0IIM8|TBC8B_HUMAN (e_value=3e-33) TBC1 domain family member 8B OS=Homo sapiens GN=TBC1D8B PE=2 SV=2;; (*TAIR) AT2G37290.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:15656935-15661335 REVERSE LENGTH=916;; (*ITAG) Solyc09g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:779711-793133 transcript_region:SL2.40ch09:779711..793133+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 9B (AHRD V1 *--- B9A6K8_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00007263g0010.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|0.5|2|213|62; (*ITAG) Solyc09g007160.2.1 (e_value=2e-26) genomic_reference:SL2.40ch09 gene_region:779711-793133 transcript_region:SL2.40ch09:779711..793133+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 9B (AHRD V1 *--- B9A6K8_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00024207g0011.1 protein AED:0.25 eAED:0.25 QI:215|1|1|1|0.75|0.8|5|288|278; (*GB) gi|225459417|ref|XP_002285821.1| (e_value=9e-110) PREDICTED: uncharacterized protein LOC100250529 [Vitis vinifera];; (*TAIR) AT1G77930.2 (e_value=4e-109) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:29301184-29302467 FORWARD LENGTH=271;; (*ITAG) Solyc12g056850.1.1 (e_value=3e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48273050-48277117 transcript_region:SL2.40ch12:48273050..48277117- go_terms:GO:0031072 functional_description:"Co-chaperone protein DnaJ (AHRD V1 *-*- A7I1Z6_CAMHC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00024207g0014.1 protein AED:0.33 eAED:0.34 QI:421|0.5|0.33|1|0|0.33|3|0|112; (*GB) gi|4097587|gb|AAD00119.1| (e_value=2e-53) NTGP5 [Nicotiana tabacum];; (*SWP) sp|Q8GWJ6|MUB6_ARATH (e_value=8e-40) Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1;; (*TAIR) AT1G22050.1 (e_value=6e-41) | Symbols: MUB6 | membrane-anchored ubiquitin-fold protein 6 precursor | chr1:7771897-7772843 FORWARD LENGTH=119;; (*ITAG) Solyc12g056900.1.1 (e_value=1e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48320357-48324502 transcript_region:SL2.40ch12:48320357..48324502- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00000310g0004.1 protein AED:0.02 eAED:0.02 QI:166|1|1|1|0.66|0.5|4|257|401; (*GB) gi|224127168|ref|XP_002320004.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=1e-45) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT4G37680.2 (e_value=0.0) | Symbols: HHP4 | heptahelical protein 4 | chr4:17701231-17702568 FORWARD LENGTH=385;; (*ITAG) Solyc03g043930.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11613485-11621558 transcript_region:SL2.40ch03:11613485..11621558- go_terms:GO:0004872 functional_description:"Adiponectin receptor protein 2 (AHRD V1 *-** B0W6M8_CULQU); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872 NbS00012505g0017.1 protein AED:0.06 eAED:0.06 QI:31|1|0.5|1|0|0|2|63|14 NbS00012505g0019.1 protein AED:0.22 eAED:0.42 QI:0|0|0|1|0.5|0.6|5|0|208; (*GB) gi|255638646|gb|ACU19628.1| (e_value=2e-40) unknown [Glycine max];; (*TAIR) AT1G65020.1 (e_value=2e-32) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319;; (*ITAG) Solyc03g097180.2.1 (e_value=7e-48) genomic_reference:SL2.40ch03 gene_region:52943951-52951087 transcript_region:SL2.40ch03:52943951..52951087- functional_description:"(RAP Annotation release2) NERD domain containing protein (AHRD V1 ***- Q336N9_ORYSJ); contains Interpro domain(s) IPR011528 NERD "; NbS00012505g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.57|0.62|0.62|0.71|0.62|8|1895|654; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-35) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-36) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=8e-138) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00012505g0010.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.2|1|1|5|0|190 NbS00012505g0020.1 protein AED:0.23 eAED:0.36 QI:76|0|0|1|0|0|2|0|120; (*ITAG) Solyc08g074530.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00016583g0001.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|1|1|2|0|168; (*GB) gi|359497481|ref|XP_003635533.1| (e_value=5e-87) PREDICTED: LOB domain-containing protein 36-like, partial [Vitis vinifera];; (*SWP) sp|Q9FKZ3|LBD36_ARATH (e_value=7e-75) LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1;; (*TAIR) AT5G66870.1 (e_value=5e-76) | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 | chr5:26706621-26707562 FORWARD LENGTH=313;; (*ITAG) Solyc02g090410.2.1 (e_value=7e-97) genomic_reference:SL2.40ch02 gene_region:46548143-46550041 transcript_region:SL2.40ch02:46548143..46550041- functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00034783g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|0.5|2|120|156; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=3e-78) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=1e-73) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=1e-45) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=6e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00034783g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=7e-80) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=4e-75) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=2e-50) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=1e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00034783g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.5|0.66|3|0|354; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=9e-69) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=4e-64) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=7e-46) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=2e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00051343g0010.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|0|245; (*GB) gi|7406995|gb|AAF61863.1|AF193770_1 (e_value=1e-124) DNA-binding protein 3 [Nicotiana tabacum];; (*ITAG) Solyc03g095770.2.1 (e_value=9e-56) genomic_reference:SL2.40ch03 gene_region:50421318-50423492 transcript_region:SL2.40ch03:50421318..50423492+ go_terms:GO:0003700 functional_description:"WRKY transcription factor 6 (AHRD V1 **** A7UGD3_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00051343g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.8|1|1|1|5|263|472; (*GB) gi|225448723|ref|XP_002275422.1| (e_value=0.0) PREDICTED: UPF0176 protein Mfla_2319-like [Vitis vinifera];; (*SWP) sp|Q1JPN0|STR7_ARATH (e_value=0.0) Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana GN=STR7 PE=2 SV=1;; (*TAIR) AT2G40760.1 (e_value=0.0) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17010050-17011968 FORWARD LENGTH=474;; (*ITAG) Solyc03g095760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50400770-50406711 transcript_region:SL2.40ch03:50400770..50406711- functional_description:"Rhodanese domain protein (AHRD V1 *--- A1VNM1_POLNA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00017895g0003.1 protein AED:0.18 eAED:0.20 QI:0|0.76|0.78|0.92|1|1|14|241|632; (*GB) gi|297744366|emb|CBI37336.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q10137|SEC14_SCHPO (e_value=3e-42) Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=2 SV=1;; (*TAIR) AT3G24840.1 (e_value=1e-174) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr3:9067301-9070256 FORWARD LENGTH=579;; (*ITAG) Solyc09g060090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53165275-53173182 transcript_region:SL2.40ch09:53165275..53173182- go_terms:GO:0005622 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7KN07_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00019613g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|465; (*GB) gi|520916|emb|CAA81748.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q42881|1A13_SOLLC (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=0.0) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc03g043890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11536608-11538987 transcript_region:SL2.40ch03:11536608..11538987+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00011335g0025.1 protein AED:0.19 eAED:0.19 QI:62|0.78|0.73|0.86|0.64|0.73|15|0|591; (*GB) gi|356552761|ref|XP_003544731.1| (e_value=0.0) PREDICTED: small RNA degrading nuclease 5-like [Glycine max];; (*SWP) sp|Q8L7M4|SDN5_ARATH (e_value=0.0) Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2;; (*TAIR) AT5G25800.1 (e_value=0.0) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:8979761-8982724 REVERSE LENGTH=567;; (*ITAG) Solyc04g064560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54848159-54862236 transcript_region:SL2.40ch04:54848159..54862236- go_terms:GO:0005515,GO:0000175 functional_description:"RNA exonuclease (AHRD V1 ***- B6K314_SCHJY); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0005515,GO:0000175 NbS00011335g0017.1 protein AED:0.25 eAED:0.26 QI:672|0.75|0.66|1|0.9|0.85|21|0|1651; (*GB) gi|224062956|ref|XP_002300947.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=2e-157) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT1G43850.2 (e_value=1e-158) | Symbols: SEU | SEUSS transcriptional co-regulator | chr1:16617872-16621596 FORWARD LENGTH=877;; (*ITAG) Solyc06g059760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34032864-34046384 transcript_region:SL2.40ch06:34032864..34046384+ go_terms:GO:0060090,GO:0003677 functional_description:"Transcriptional corepressor SEUSS (AHRD V1 **-- SEUSS_ARATH)"; GO:0060090,GO:0003677 NbS00011335g0018.1 protein AED:0.24 eAED:0.28 QI:39|0.71|0.62|1|0.71|0.75|8|1139|174 NbS00011335g0026.1 protein AED:0.18 eAED:0.21 QI:0|0.42|0.5|1|0.85|0.87|8|189|490; (*GB) gi|225457809|ref|XP_002266110.1| (e_value=4e-158) PREDICTED: ribosome maturation protein SBDS [Vitis vinifera];; (*SWP) sp|Q3SWZ6|SBDS_BOVIN (e_value=1e-78) Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1;; (*TAIR) AT1G43860.1 (e_value=1e-154) | Symbols: | sequence-specific DNA binding transcription factors | chr1:16622244-16624385 REVERSE LENGTH=370;; (*ITAG) Solyc04g064570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54864818-54870536 transcript_region:SL2.40ch04:54864818..54870536+ go_terms:GO:0008017,GO:0042802 functional_description:"Ribosome maturation protein SBDS (AHRD V1 **-- B5XEK1_SALSA); contains Interpro domain(s) IPR002140 Ribosome maturation protein SBDS "; GO:0008017,GO:0042802 NbS00001960g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|0|0.4|5|0|210; (*GB) gi|169908354|gb|ACB05475.1| (e_value=6e-139) LIM domain protein 2b [Nicotiana tabacum];; (*SWP) sp|P29675|SF3_HELAN (e_value=6e-55) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT3G61230.1 (e_value=1e-96) | Symbols: | GATA type zinc finger transcription factor family protein | chr3:22664601-22665503 REVERSE LENGTH=213;; (*ITAG) Solyc10g017520.2.1 (e_value=5e-120) genomic_reference:SL2.40ch10 gene_region:5391530-5393991 transcript_region:SL2.40ch10:5391530..5393991+ go_terms:GO:0042802 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00001960g0002.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|218552041|gb|ACK99041.1| (e_value=1e-53) hydroxyphenylpyruvate reductase [Salvia officinalis];; (*SWP) sp|Q5JEZ2|GYAR_PYRKO (e_value=1e-16) Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=1e-46) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc03g120680.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:63041368-63043912 transcript_region:SL2.40ch03:63041368..63043912+ go_terms:GO:0047964 functional_description:"Glyoxylate reductase (AHRD V1 **** B6TL24_MAIZE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0047964 NbS00001960g0001.1 protein AED:0.45 eAED:0.47 QI:0|0.5|0.66|1|1|1|3|22|78; (*ITAG) Solyc10g008210.2.1 (e_value=1e-20) genomic_reference:SL2.40ch10 gene_region:2325581-2332352 transcript_region:SL2.40ch10:2325581..2332352+ go_terms:GO:0008017 functional_description:"Os07g0507200 protein (Fragment) (AHRD V1 *-*- C7J530_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; GO:0008017 NbS00001960g0005.1 protein AED:0.54 eAED:0.54 QI:137|0|0.5|0.5|1|1|2|0|108 NbS00000158g0003.1 protein AED:0.08 eAED:0.08 QI:95|1|1|1|1|1|2|345|136; (*GB) gi|365222884|gb|AEW69794.1| (e_value=1e-34) Hop-interacting protein THI031 [Solanum lycopersicum];; (*TAIR) AT5G40690.1 (e_value=2e-27) | Symbols: | CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16290770-16291402 FORWARD LENGTH=210;; (*ITAG) Solyc02g093710.1.1 (e_value=2e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49040402-49040977 transcript_region:SL2.40ch02:49040402..49040977+ functional_description:"Genomic DNA chromosome 3 TAC clone K1G2 (AHRD V1 *-*- Q9LTZ3_ARATH)"; NbS00005252g0004.1 protein AED:0.03 eAED:0.03 QI:268|1|1|1|1|1|7|422|608; (*GB) gi|225443427|ref|XP_002267835.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244378 [Vitis vinifera];; (*TAIR) AT1G78930.1 (e_value=2e-177) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29678285-29680648 REVERSE LENGTH=591;; (*ITAG) Solyc03g124040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64802905-64811982 transcript_region:SL2.40ch03:64802905..64811982- functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00051763g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|225452101|ref|XP_002284159.1| (e_value=5e-35) PREDICTED: uncharacterized protein LOC100254978 [Vitis vinifera];; (*TAIR) AT1G66890.1 (e_value=4e-17) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24957614-24958090 FORWARD LENGTH=158;; (*ITAG) Solyc02g086260.1.1 (e_value=4e-65) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:43554211-43554672 transcript_region:SL2.40ch02:43554211..43554672- functional_description:"Unknown Protein (AHRD V1)"; NbS00005881g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|359; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=2e-115) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*SWP) sp|P28829|BYR2_SCHPO (e_value=5e-42) Protein kinase byr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr2 PE=1 SV=1;; (*TAIR) AT5G67080.1 (e_value=4e-110) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc02g064980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30683256-30684335 transcript_region:SL2.40ch02:30683256..30684335- go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00019036g0003.1 protein AED:0.09 eAED:0.09 QI:386|1|1|1|0.75|0.77|9|293|258; (*GB) gi|6094327|sp|Q96556.1|SPD1_DATST (e_value=3e-176) RecName: Full=Spermidine synthase 1; Short=SPDSY 1; AltName: Full=Putrescine aminopropyltransferase 1;; (*SWP) sp|Q96556|SPD1_DATST (e_value=9e-178) Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT1G23820.1 (e_value=7e-159) | Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378;; (*ITAG) Solyc04g026030.2.1 (e_value=4e-178) genomic_reference:SL2.40ch04 gene_region:23857380-23860834 transcript_region:SL2.40ch04:23857380..23860834- go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** Q93X16_SOLTU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00010769g0006.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|801 NbS00010769g0018.1 protein AED:0.11 eAED:0.11 QI:0|1|0.91|1|1|1|12|0|563; (*GB) gi|224104643|ref|XP_002313512.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FF55|PDI14_ARATH (e_value=0.0) Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=2 SV=1;; (*TAIR) AT5G60640.1 (e_value=0.0) | Symbols: ATPDIL1-4, PDI2, ATPDI2, PDIL1-4 | PDI-like 1-4 | chr5:24371141-24373993 REVERSE LENGTH=597;; (*ITAG) Solyc06g075210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43062585-43066326 transcript_region:SL2.40ch06:43062585..43066326+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-2 (AHRD V1 **** B1Q2X5_SOYBN); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756 NbS00010769g0019.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|1|0.66|3|0|265; (*GB) gi|11133833|sp|O04857.1|PP12_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP1 isozyme 2;; (*SWP) sp|O04857|PP12_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1;; (*TAIR) AT2G39840.1 (e_value=1e-163) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g076430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43879707-43882482 transcript_region:SL2.40ch06:43879707..43882482- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q9SPE2_MALDO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00010769g0017.1 protein AED:0.14 eAED:0.21 QI:325|0.75|0.6|1|0.25|0.4|5|0|258; (*GB) gi|350540120|ref|NP_001233880.1| (e_value=2e-149) C-4 methyl sterol oxidase [Solanum lycopersicum];; (*SWP) sp|Q8VWZ8|SMO22_ARATH (e_value=3e-134) Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1;; (*TAIR) AT1G07420.1 (e_value=2e-135) | Symbols: ATSMO2, SMO2-1 | sterol 4-alpha-methyl-oxidase 2-1 | chr1:2277910-2280033 FORWARD LENGTH=266;; (*ITAG) Solyc06g076410.2.1 (e_value=4e-152) genomic_reference:SL2.40ch06 gene_region:43865635-43871996 transcript_region:SL2.40ch06:43865635..43871996- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00010769g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|147841991|emb|CAN60933.1| (e_value=8e-51) hypothetical protein VITISV_022591 [Vitis vinifera];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=1e-43) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=8e-45) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc06g075220.1.1 (e_value=2e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43067777-43068526 transcript_region:SL2.40ch06:43067777..43068526+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 5 (AHRD V1 ***- A9XTL0_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00010769g0020.1 protein AED:0.35 eAED:0.35 QI:205|1|1|1|0.8|1|6|308|177; (*GB) gi|255558950|ref|XP_002520498.1| (e_value=1e-119) DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis];; (*SWP) sp|P46279|RPB7_SOYBN (e_value=2e-119) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G59180.1 (e_value=5e-118) | Symbols: NRPB7 | DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176;; (*ITAG) Solyc06g005790.2.1 (e_value=2e-128) genomic_reference:SL2.40ch06 gene_region:819742-824084 transcript_region:SL2.40ch06:819742..824084- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003899 NbS00034908g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|89 NbS00007081g0009.1 protein AED:0.27 eAED:0.27 QI:1162|0.62|0.44|1|0.75|0.66|9|0|602; (*GB) gi|350534600|ref|NP_001234149.1| (e_value=0.0) ethylene receptor 1 [Solanum lycopersicum];; (*SWP) sp|Q41342|ETR1_SOLLC (e_value=0.0) Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1;; (*TAIR) AT1G66340.1 (e_value=0.0) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00007081g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.77|0.7|1|0.77|1|10|345|360; (*GB) gi|62867578|emb|CAI84654.1| (e_value=5e-116) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G14450.1 (e_value=9e-97) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc12g011340.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4183346-4190442 transcript_region:SL2.40ch12:4183346..4190442+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *-*- D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00007023g0005.1 protein AED:0.21 eAED:0.21 QI:256|1|1|1|0.66|0.6|10|516|784; (*GB) gi|225464503|ref|XP_002272091.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera];; (*SWP) sp|Q94A51|PUB32_ARATH (e_value=0.0) U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1;; (*TAIR) AT3G49060.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr3:18187386-18191878 REVERSE LENGTH=805;; (*ITAG) Solyc03g025450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7242406-7250906 transcript_region:SL2.40ch03:7242406..7250906- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00023785g0011.1 protein AED:0.29 eAED:0.29 QI:198|1|0.75|1|0.66|0.75|4|0|413; (*GB) gi|255540029|ref|XP_002511079.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q940Q8|IX10L_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1;; (*TAIR) AT5G61840.1 (e_value=0.0) | Symbols: GUT1 | Exostosin family protein | chr5:24839365-24841703 REVERSE LENGTH=415;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00023785g0001.1 protein AED:0.18 eAED:0.24 QI:77|0.8|0.83|1|0.4|0.5|6|33|462; (*GB) gi|317106617|dbj|BAJ53124.1| (e_value=5e-72) JHL07K02.14 [Jatropha curcas];; (*TAIR) AT5G61865.1 (e_value=1e-60) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24847395-24849706 FORWARD LENGTH=417;; (*ITAG) Solyc12g042340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:42923683-42926664 transcript_region:SL2.40ch12:42923683..42926664- functional_description:"Genomic DNA chromosome 5 P1 clone MAC9 (AHRD V1 ***- Q9FLS4_ARATH)"; NbS00023785g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.25|1|1|1|4|325|210; (*GB) gi|296088155|emb|CBI35625.3| (e_value=1e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G51040.1 (e_value=4e-46) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | chr5:20750700-20751790 FORWARD LENGTH=188;; (*ITAG) Solyc03g118110.2.1 (e_value=3e-65) genomic_reference:SL2.40ch03 gene_region:61127336-61132194 transcript_region:SL2.40ch03:61127336..61132194+ functional_description:"Succinate dehydrogenase assembly factor 2, mitochondrial (AHRD V1 *--- SDHF2_CAEBR); contains Interpro domain(s) IPR005631 Protein of unknown function DUF339 "; NbS00023785g0005.1 protein AED:0.54 eAED:0.54 QI:0|1|0|1|1|1|2|0|70; (*GB) gi|334188305|ref|NP_001190509.1| (e_value=4e-26) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G51040.3 (e_value=9e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). | chr5:20750700-20751790 FORWARD LENGTH=197;; (*ITAG) Solyc03g118110.2.1 (e_value=8e-27) genomic_reference:SL2.40ch03 gene_region:61127336-61132194 transcript_region:SL2.40ch03:61127336..61132194+ functional_description:"Succinate dehydrogenase assembly factor 2, mitochondrial (AHRD V1 *--- SDHF2_CAEBR); contains Interpro domain(s) IPR005631 Protein of unknown function DUF339 "; NbS00015607g0008.1 protein AED:0.32 eAED:0.32 QI:0|0|0.33|1|0.5|0.33|3|0|343; (*GB) gi|81074776|gb|ABB55374.1| (e_value=2e-148) ribosomal protein L2-like [Solanum tuberosum];; (*SWP) sp|P29766|RL8_SOLLC (e_value=5e-150) 60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1;; (*TAIR) AT4G36130.1 (e_value=1e-144) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc12g005330.1.1 (e_value=8e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:208843-210348 transcript_region:SL2.40ch12:208843..210348+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00015607g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.75|1|0.66|0.75|4|603|117; (*GB) gi|224115158|ref|XP_002316957.1| (e_value=1e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|P20397|NUCL_XENLA (e_value=7e-11) Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3;; (*TAIR) AT5G54580.1 (e_value=2e-42) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156;; (*ITAG) Solyc07g063900.2.1 (e_value=2e-55) genomic_reference:SL2.40ch07 gene_region:63466890-63470837 transcript_region:SL2.40ch07:63466890..63470837+ go_terms:GO:0008266 functional_description:"RNA binding protein (AHRD V1 **-* B6TNV4_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00015607g0009.1 protein AED:0.22 eAED:0.69 QI:0|0|0|1|0|0|2|0|71 NbS00015607g0011.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|70; (*GB) gi|84688908|gb|ABC61503.1| (e_value=4e-15) AGO1-2, partial [Nicotiana benthamiana];; (*ITAG) Solyc06g072300.2.1 (e_value=8e-16) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00021732g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|0|135; (*GB) gi|147852876|emb|CAN79082.1| (e_value=2e-55) hypothetical protein VITISV_004821 [Vitis vinifera];; (*ITAG) Solyc10g008330.2.1 (e_value=2e-64) genomic_reference:SL2.40ch10 gene_region:2466093-2467665 transcript_region:SL2.40ch10:2466093..2467665- go_terms:GO:0009607 functional_description:"Pollen allergen-like protein (Fragment) (AHRD V1 **-- A9XNU2_9MYRT); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00021732g0010.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|490; (*GB) gi|255553755|ref|XP_002517918.1| (e_value=1e-128) structural constituent of cell wall, putative [Ricinus communis];; (*TAIR) AT4G28300.1 (e_value=8e-82) | Symbols: | Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496;; (*ITAG) Solyc10g008340.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2468971-2473546 transcript_region:SL2.40ch10:2468971..2473546- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00021732g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|356542152|ref|XP_003539534.1| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100819841 [Glycine max];; (*TAIR) AT4G28310.1 (e_value=2e-32) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14017458-14018066 FORWARD LENGTH=202;; (*ITAG) Solyc10g008320.1.1 (e_value=4e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2464074-2464700 transcript_region:SL2.40ch10:2464074..2464700- functional_description:"Unknown Protein (AHRD V1)"; NbS00021948g0007.1 protein AED:0.16 eAED:0.16 QI:306|0.4|0.16|1|0.6|0.5|6|0|757; (*GB) gi|297739046|emb|CBI28535.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80763|NRX1_ARATH (e_value=0.0) Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1;; (*TAIR) AT1G60420.1 (e_value=0.0) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc05g005460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:341827-347358 transcript_region:SL2.40ch05:341827..347358+ go_terms:GO:0004791 functional_description:"Nucleoredoxin 2 (AHRD V1 *--- A8I9J4_CHLRE); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0004791 NbS00021948g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|159; (*GB) gi|41393676|gb|AAS02080.1| (e_value=3e-48) protein disulfide isomerase [Quercus suber];; (*SWP) sp|Q7Y0E8|NRX11_ORYSJ (e_value=2e-40) Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1;; (*TAIR) AT1G60420.1 (e_value=2e-38) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc05g005470.2.1 (e_value=1e-68) genomic_reference:SL2.40ch05 gene_region:349019-351148 transcript_region:SL2.40ch05:349019..351148+ go_terms:GO:0004791 functional_description:"Nucleoredoxin 1 (AHRD V1 *--- A8I9L1_CHLRE); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0004791 NbS00056252g0003.1 protein AED:0.24 eAED:0.24 QI:177|1|1|1|1|1|4|435|295; (*GB) gi|38605537|sp|P93349.1|XTH_TOBAC (e_value=0.0) RecName: Full=Probable xyloglucan endotransglucosylase/hydrolase protein; Flags: Precursor;; (*SWP) sp|P93349|XTH_TOBAC (e_value=0.0) Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1;; (*TAIR) AT5G13870.1 (e_value=2e-161) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc01g099630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81570892-81573619 transcript_region:SL2.40ch01:81570892..81573619- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRG4_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase IPR008263 Glycoside hydrolase, family 16, active site "; GO:0016798 NbS00056367g0005.1 protein AED:0.21 eAED:0.21 QI:178|1|0.71|1|0.83|1|7|0|242; (*GB) gi|445613|prf||1909359B (e_value=1e-164) ribosomal protein L7;; (*SWP) sp|Q9LHP1|RL74_ARATH (e_value=4e-152) 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1;; (*TAIR) AT3G13580.1 (e_value=3e-153) | Symbols: | Ribosomal protein L30/L7 family protein | chr3:4433809-4435109 FORWARD LENGTH=244;; (*ITAG) Solyc07g008370.2.1 (e_value=3e-167) genomic_reference:SL2.40ch07 gene_region:3146832-3149440 transcript_region:SL2.40ch07:3146832..3149440+ go_terms:GO:0003735,GO:0042803 functional_description:"60S ribosomal protein L7 (AHRD V1 ***- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0003735,GO:0042803 NbS00056367g0006.1 protein AED:0.14 eAED:0.14 QI:10|1|1|1|1|0.87|8|272|402; (*GB) gi|224090503|ref|XP_002309003.1| (e_value=4e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|P41777|NOLC1_RAT (e_value=2e-16) Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1;; (*TAIR) AT5G57120.1 (e_value=5e-32) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink). | chr5:23122767-23124400 REVERSE LENGTH=330;; (*ITAG) Solyc07g008330.2.1 (e_value=3e-146) genomic_reference:SL2.40ch07 gene_region:3114775-3120434 transcript_region:SL2.40ch07:3114775..3120434- functional_description:"Nucleolar and coiled-body phosphoprotein 1-like (AHRD V1 *--- B8JIY2_DANRE); contains Interpro domain(s) IPR007718 SRP40, C-terminal "; NbS00038673g0001.1 protein AED:0.80 eAED:0.80 QI:64|0|0|0.25|1|0.75|4|0|94 NbS00055635g0004.1 protein AED:0.08 eAED:0.08 QI:213|1|1|1|1|1|8|334|896; (*GB) gi|297735062|emb|CBI17424.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD39|PMTR_ARATH (e_value=0.0) Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1;; (*TAIR) AT3G51070.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:18969068-18972291 FORWARD LENGTH=895;; (*ITAG) Solyc02g084670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42331379-42334842 transcript_region:SL2.40ch02:42331379..42334842- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00021978g0005.1 protein AED:0.11 eAED:0.11 QI:32|0.66|0.71|1|0.83|0.85|7|334|581; (*GB) gi|224094809|ref|XP_002310245.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=0.0) Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1;; (*TAIR) AT5G03260.1 (e_value=0.0) | Symbols: LAC11 | laccase 11 | chr5:777198-779338 REVERSE LENGTH=557;; (*ITAG) Solyc02g085110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42674495-42676816 transcript_region:SL2.40ch02:42674495..42676816- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00023686g0020.1 protein AED:0.03 eAED:0.03 QI:124|1|1|1|0.62|0.55|9|175|810; (*GB) gi|224121826|ref|XP_002318682.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P54774|CDC48_SOYBN (e_value=0.0) Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc03g112590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57029718-57040222 transcript_region:SL2.40ch03:57029718..57040222- go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0004176 NbS00023686g0021.1 protein AED:0.06 eAED:0.06 QI:678|0.33|0|1|0|0|4|0|1020; (*GB) gi|255549323|ref|XP_002515715.1| (e_value=0.0) translation elongation factor, putative [Ricinus communis];; (*SWP) sp|O74945|RIA1_SCHPO (e_value=0.0) Ribosome assembly protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ria1 PE=2 SV=1;; (*TAIR) AT3G22980.1 (e_value=0.0) | Symbols: | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:8160269-8163316 REVERSE LENGTH=1015;; (*ITAG) Solyc11g071770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52229263-52232337 transcript_region:SL2.40ch11:52229263..52232337- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor Tu family protein (AHRD V1 **** D7L2H7_ARALY); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00023686g0019.1 protein AED:0.19 eAED:0.19 QI:36|1|1|1|0.85|0.75|8|0|436; (*GB) gi|255540587|ref|XP_002511358.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G50150.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr5:20402444-20406375 REVERSE LENGTH=420;; (*ITAG) Solyc03g112620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57051293-57055116 transcript_region:SL2.40ch03:57051293..57055116- functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00023686g0023.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|231|1112; (*GB) gi|255540579|ref|XP_002511354.1| (e_value=0.0) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|C0LGR3|Y4265_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1;; (*TAIR) AT4G26540.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:13394673-13398028 REVERSE LENGTH=1091;; (*ITAG) Solyc03g112580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57019900-57024495 transcript_region:SL2.40ch03:57019900..57024495+ go_terms:GO:0004674,GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0004674,GO:0001653 NbS00023686g0017.1 protein AED:0.22 eAED:0.22 QI:102|0.77|0.9|1|1|1|10|455|495; (*GB) gi|225456953|ref|XP_002278337.1| (e_value=0.0) PREDICTED: jmjC domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q08BY5|JMJD4_DANRE (e_value=9e-70) JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1;; (*TAIR) AT5G63080.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:25300026-25302321 REVERSE LENGTH=462;; (*ITAG) Solyc03g112600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57046297-57050443 transcript_region:SL2.40ch03:57046297..57050443+ go_terms:GO:0003700 functional_description:"JmjC domain-containing protein (AHRD V1 **-- B6K2H3_SCHJY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00005120g0009.1 protein AED:0.09 eAED:0.09 QI:204|0.92|0.92|1|0.92|1|14|456|453; (*GB) gi|255540501|ref|XP_002511315.1| (e_value=0.0) thyroid hormone receptor interactor, putative [Ricinus communis];; (*SWP) sp|Q8H1F9|PCH2_ARATH (e_value=0.0) Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana GN=At4g24710 PE=2 SV=1;; (*TAIR) AT4G24710.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12745752-12748995 REVERSE LENGTH=475;; (*ITAG) Solyc12g076350.1.1 (e_value=3e-112) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:55913150-55915071 transcript_region:SL2.40ch12:55913150..55915071- functional_description:"Thyroid receptor-interacting protein 13 (AHRD V1 ***- B6U6B8_MAIZE)"; NbS00005120g0003.1 protein AED:0.05 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|359491203|ref|XP_003634240.1| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100855230 [Vitis vinifera];; (*ITAG) Solyc03g112210.1.1 (e_value=5e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:56741857-56742135 transcript_region:SL2.40ch03:56741857..56742135- functional_description:"Unknown Protein (AHRD V1)"; NbS00036221g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|4|214|704; (*GB) gi|147838732|emb|CAN71826.1| (e_value=0.0) hypothetical protein VITISV_013841 [Vitis vinifera];; (*TAIR) AT3G15940.2 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:5393632-5396187 REVERSE LENGTH=697;; (*ITAG) Solyc03g120310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62797197-62801828 transcript_region:SL2.40ch03:62797197..62801828+ go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 *-*- A1ZR60_9BACT); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00036221g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|224058800|ref|XP_002299632.1| (e_value=4e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8L2|FBK30_ARATH (e_value=2e-118) F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1;; (*TAIR) AT1G80440.1 (e_value=1e-119) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:30241763-30242827 FORWARD LENGTH=354;; (*ITAG) Solyc03g120320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62801895-62802962 transcript_region:SL2.40ch03:62801895..62802962- functional_description:"Kelch-like protein (AHRD V1 *-*- C4Q722_SCHMA); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00013928g0001.1 protein AED:0.28 eAED:0.28 QI:105|0.75|0.77|1|1|1|9|0|490; (*GB) gi|359811337|ref|NP_001241486.1| (e_value=0.0) uncharacterized protein LOC100784099 [Glycine max];; (*SWP) sp|Q5ZMS3|IF2G_CHICK (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc01g066690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67249597-67259592 transcript_region:SL2.40ch01:67249597..67259592+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00035369g0008.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.2|0.75|0.8|5|0|172; (*ITAG) Solyc07g018420.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:10589733-10591385 transcript_region:SL2.40ch07:10589733..10591385- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00035369g0011.1 protein AED:0.27 eAED:0.35 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-24) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc12g019720.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00035369g0010.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|0|0|2|0|129 NbS00035369g0009.1 protein AED:0.27 eAED:0.34 QI:0|0|0|1|0|0|2|0|123; (*ITAG) Solyc01g094420.2.1 (e_value=7e-23) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00003612g0006.1 protein AED:0.42 eAED:0.42 QI:211|0.6|0.33|1|0.2|0.5|6|0|186; (*GB) gi|225453450|ref|XP_002275918.1| (e_value=2e-31) PREDICTED: dnaJ protein homolog 2 [Vitis vinifera];; (*SWP) sp|Q03363|DNJH1_ALLPO (e_value=2e-26) DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.2 (e_value=9e-28) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869179-15871059 REVERSE LENGTH=343;; (*ITAG) Solyc01g090550.2.1 (e_value=7e-35) genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00003612g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0.25|1|0.66|0.75|4|0|213; (*GB) gi|225453450|ref|XP_002275918.1| (e_value=3e-72) PREDICTED: dnaJ protein homolog 2 [Vitis vinifera];; (*SWP) sp|P42824|DNJH2_ALLPO (e_value=1e-65) DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=8e-64) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc01g090550.2.1 (e_value=9e-93) genomic_reference:SL2.40ch01 gene_region:75967817-75971749 transcript_region:SL2.40ch01:75967817..75971749+ go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00001594g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|1|1|3|451|147; (*GB) gi|356507959|ref|XP_003522730.1| (e_value=4e-61) PREDICTED: xylulose kinase-like [Glycine max];; (*TAIR) AT5G49650.1 (e_value=3e-63) | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152898-20155574 FORWARD LENGTH=558;; (*ITAG) Solyc04g077030.2.1 (e_value=1e-75) genomic_reference:SL2.40ch04 gene_region:59587234-59591440 transcript_region:SL2.40ch04:59587234..59591440- go_terms:GO:0004856 functional_description:"Xylulose kinase (AHRD V1 ***- D7MPD2_ARALY); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0004856 NbS00001594g0015.1 protein AED:0.04 eAED:0.04 QI:64|0.5|0.6|1|0.75|0.6|5|0|553; (*GB) gi|268619136|gb|ACZ13344.1| (e_value=0.0) tubulin alpha chain [Bursaphelenchus xylophilus];; (*SWP) sp|Q9ZRR5|TBA3_HORVU (e_value=0.0) Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1;; (*TAIR) AT4G14960.1 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc04g077020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00001594g0016.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|299|945; (*GB) gi|224063397|ref|XP_002301126.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=4e-153) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G49660.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:20161401-20164534 REVERSE LENGTH=966;; (*ITAG) Solyc04g077010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59562906-59566375 transcript_region:SL2.40ch04:59562906..59566375+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00024381g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|0.66|0.5|4|0|1089; (*GB) gi|359497186|ref|XP_003635448.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=3e-167) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=2e-168) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc08g075600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56914849-56919211 transcript_region:SL2.40ch08:56914849..56919211- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00024121g0004.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0|4|0|262; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-58) hypothetical protein [Nicotiana tabacum]; NbS00000901g0007.1 protein AED:0.25 eAED:0.25 QI:13|0.90|0.83|1|1|0.91|12|41|437; (*GB) gi|619894|emb|CAA58594.1| (e_value=0.0) Petunia Shaggy kinase 4 [Petunia x hybrida];; (*SWP) sp|Q8VZD5|KSG5_ARATH (e_value=0.0) Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1;; (*TAIR) AT5G14640.1 (e_value=0.0) | Symbols: ATSK13, SK13 | shaggy-like kinase 13 | chr5:4719350-4721772 REVERSE LENGTH=410;; (*ITAG) Solyc12g062870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:53493792-53499405 transcript_region:SL2.40ch12:53493792..53499405+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011948g0001.1 protein AED:0.12 eAED:0.12 QI:405|0.5|0.66|1|0|0.33|3|0|291; (*GB) gi|319718165|gb|ADV59384.1| (e_value=0.0) GAGA-binding transcriptional activator [Nicotiana tabacum];; (*SWP) sp|Q5VSA8|BBRD_ORYSJ (e_value=1e-84) Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1;; (*TAIR) AT5G42520.2 (e_value=1e-80) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=338;; (*ITAG) Solyc02g084230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41967741-41968607 transcript_region:SL2.40ch02:41967741..41968607- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00011948g0016.1 protein AED:0.06 eAED:0.13 QI:356|0.75|0.6|1|0.5|0.6|5|0|804; (*GB) gi|225458045|ref|XP_002277913.1| (e_value=1e-39) PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis vinifera];; (*SWP) sp|Q56XU4|C3H6_ARATH (e_value=3e-35) Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1;; (*TAIR) AT1G19860.1 (e_value=3e-36) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:6891654-6894400 REVERSE LENGTH=413;; (*ITAG) Solyc02g084200.1.1 (e_value=2e-140) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41952210-41955960 transcript_region:SL2.40ch02:41952210..41955960- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 6 (AHRD V1 *-*- C3H6_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00011948g0011.1 protein AED:0.14 eAED:0.14 QI:281|1|1|1|1|1|6|381|205; (*GB) gi|225431179|ref|XP_002269956.1| (e_value=1e-103) PREDICTED: uncharacterized protein LOC100259183 [Vitis vinifera];; (*TAIR) AT5G66290.1 (e_value=1e-95) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26477917-26479441 REVERSE LENGTH=202;; (*ITAG) Solyc02g084220.2.1 (e_value=9e-127) genomic_reference:SL2.40ch02 gene_region:41960519-41967145 transcript_region:SL2.40ch02:41960519..41967145- functional_description:"Genomic DNA chromosome 5 TAC clone K1L20 (AHRD V1 ***- Q9FH60_ARATH)"; NbS00011948g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|367; (*GB) gi|356496661|ref|XP_003517184.1| (e_value=0.0) PREDICTED: GDP-mannose 4,6 dehydratase 2-like [Glycine max];; (*SWP) sp|P93031|GMD2_ARATH (e_value=0.0) GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3;; (*TAIR) AT3G51160.1 (e_value=0.0) | Symbols: MUR1, MUR_1, GMD2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19007232-19008353 REVERSE LENGTH=373;; (*ITAG) Solyc02g084210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41957831-41958916 transcript_region:SL2.40ch02:41957831..41958916+ go_terms:GO:0008446 functional_description:"GDP-mannose 4 6-dehydratase (AHRD V1 **** B7XH28_NICBE); contains Interpro domain(s) IPR006368 GDP-mannose 4,6-dehydratase "; GO:0008446 NbS00014155g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.85|0.73|0.86|0.78|0.93|15|14|577; (*GB) gi|255539883|ref|XP_002511006.1| (e_value=7e-136) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C8Z4|HEAT1_ARATH (e_value=5e-79) Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3;; (*TAIR) AT3G06530.1 (e_value=3e-80) | Symbols: | ARM repeat superfamily protein | chr3:2022596-2033637 FORWARD LENGTH=2197;; (*ITAG) Solyc03g093480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48226050-48252855 transcript_region:SL2.40ch03:48226050..48252855- go_terms:GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 10 (AHRD V1 *--- C8VGG5_EMENI); contains Interpro domain(s) IPR012954 BP28, C-terminal "; GO:0005515 NbS00023426g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.83|0.84|1|0.90|0.93|32|0|1393; (*GB) gi|359488002|ref|XP_002263591.2| (e_value=0.0) PREDICTED: myosin-H heavy chain-like [Vitis vinifera];; (*SWP) sp|P08799|MYS2_DICDI (e_value=2e-115) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT1G54560.1 (e_value=0.0) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc06g008530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:2412529-2429116 transcript_region:SL2.40ch06:2412529..2429116- go_terms:GO:0060001 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00006981g0008.1 protein AED:0.00 eAED:0.00 QI:177|1|0.5|1|1|1|2|0|658; (*GB) gi|224058453|ref|XP_002299517.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAJ9|Y1385_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g63850 OS=Arabidopsis thaliana GN=At1g63850 PE=1 SV=1;; (*TAIR) AT1G63850.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr1:23696962-23698708 FORWARD LENGTH=548;; (*ITAG) Solyc08g081380.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61613291-61616090 transcript_region:SL2.40ch08:61613291..61616090+ go_terms:GO:0005515 functional_description:"At5g63850-like protein (Fragment) (AHRD V1 *-*- Q3YI76_ARALY); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00006981g0007.1 protein AED:0.24 eAED:0.24 QI:221|1|1|1|1|1|5|359|341; (*GB) gi|297742223|emb|CBI34372.3| (e_value=2e-172) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q99288|DET1_YEAST (e_value=2e-32) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=4e-97) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc08g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61616212-61618829 transcript_region:SL2.40ch08:61616212..61618829- go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 *-*- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00007915g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|0.66|1|0.66|3|0|399; (*GB) gi|224129194|ref|XP_002320524.1| (e_value=7e-130) fasciclin-like arabinogalactan protein [Populus trichocarpa];; (*SWP) sp|Q9SU13|FLA2_ARATH (e_value=4e-117) Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1;; (*TAIR) AT4G12730.1 (e_value=3e-118) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403;; (*ITAG) Solyc12g006110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:676188-677943 transcript_region:SL2.40ch12:676188..677943- functional_description:"Fasciclin-like arabinogalactan protein 19 (AHRD V1 ***- A9XTM4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00046730g0009.1 protein AED:0.03 eAED:0.03 QI:190|0.83|1|1|0.66|0.85|7|574|164; (*GB) gi|225459528|ref|XP_002285846.1| (e_value=1e-88) PREDICTED: cation transport regulator-like protein 2 [Vitis vinifera];; (*SWP) sp|Q4KMJ1|CHAC2_DANRE (e_value=4e-34) Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1;; (*TAIR) AT1G44790.1 (e_value=4e-80) | Symbols: | ChaC-like family protein | chr1:16912403-16913582 REVERSE LENGTH=199;; (*ITAG) Solyc11g012910.1.1 (e_value=4e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5698967-5704663 transcript_region:SL2.40ch11:5698967..5704663+ functional_description:"Cation transport regulator protein (AHRD V1 ***- D8J1D8_HERSS); contains Interpro domain(s) IPR006840 ChaC-like protein "; NbS00046730g0013.1 protein AED:0.29 eAED:0.34 QI:0|0|0|0.75|0.66|0.5|4|0|183 NbS00046730g0003.1 protein AED:0.32 eAED:0.32 QI:1680|0.75|0.8|1|0.5|0.6|5|555|115; (*GB) gi|224063106|ref|XP_002300995.1| (e_value=1e-12) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g012920.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5707278-5715062 transcript_region:SL2.40ch11:5707278..5715062- functional_description:"AT4G08310 protein (Fragment) (AHRD V1 ***- B9DFL6_ARATH); contains Interpro domain(s) IPR019098 Histone chaperone domain CHZ "; NbS00030446g0004.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|3|0|881; (*GB) gi|124358348|gb|ABG37022.1| (e_value=0.0) serine protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-168) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=3e-169) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2176697-2178934 transcript_region:SL2.40ch08:2176697..2178934+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00010839g0010.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.83|1|1|1|6|233|320; (*GB) gi|356511575|ref|XP_003524500.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase DDB_G0291350-like [Glycine max];; (*SWP) sp|O75716|STK16_HUMAN (e_value=1e-47) Serine/threonine-protein kinase 16 OS=Homo sapiens GN=STK16 PE=1 SV=4;; (*TAIR) AT5G08160.1 (e_value=0.0) | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625903-2627942 REVERSE LENGTH=347;; (*ITAG) Solyc03g114590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58588643-58592578 transcript_region:SL2.40ch03:58588643..58592578+ go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q8L9Q3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00010839g0012.1 protein AED:0.15 eAED:0.15 QI:260|1|1|1|0.28|0.37|8|509|295; (*GB) gi|350537971|ref|NP_001234320.1| (e_value=3e-103) protein ASC1 [Solanum lycopersicum];; (*SWP) sp|Q9M6A3|ASC1_SOLLC (e_value=8e-105) Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2;; (*TAIR) AT3G25540.1 (e_value=7e-86) | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr3:9274752-9276261 FORWARD LENGTH=310;; (*ITAG) Solyc03g114600.2.1 (e_value=2e-105) genomic_reference:SL2.40ch03 gene_region:58592692-58594435 transcript_region:SL2.40ch03:58592692..58594435- go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00010839g0014.1 protein AED:0.24 eAED:0.24 QI:844|0.83|0.84|0.92|0.66|0.76|13|0|413; (*GB) gi|356511573|ref|XP_003524499.1| (e_value=0.0) PREDICTED: uridine-cytidine kinase C-like [Glycine max];; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=8e-97) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT1G73980.1 (e_value=0.0) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:27820292-27823527 REVERSE LENGTH=643;; (*ITAG) Solyc03g114580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58573165-58583411 transcript_region:SL2.40ch03:58573165..58583411- go_terms:GO:0006171,GO:0008152,GO:0016773 functional_description:"Uridine kinase (AHRD V1 *-*- C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0006171,GO:0008152,GO:0016773 NbS00025632g0010.1 protein AED:0.27 eAED:0.29 QI:251|0.88|0.9|1|0.88|0.8|10|0|430; (*GB) gi|365222924|gb|AEW69814.1| (e_value=0.0) Hop-interacting protein THI115 [Solanum lycopersicum];; (*TAIR) AT5G13020.1 (e_value=4e-150) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc01g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70554643-70560979 transcript_region:SL2.40ch01:70554643..70560979- functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00025632g0007.1 protein AED:0.29 eAED:0.30 QI:0|0.5|0|1|0.5|0.33|3|0|638; (*GB) gi|225450325|ref|XP_002268328.1| (e_value=9e-112) PREDICTED: uncharacterized protein LOC100263099 [Vitis vinifera];; (*TAIR) AT2G44430.1 (e_value=2e-74) | Symbols: | DNA-binding bromodomain-containing protein | chr2:18333603-18336165 FORWARD LENGTH=646;; (*ITAG) Solyc01g073950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70543416-70547894 transcript_region:SL2.40ch01:70543416..70547894+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9N6H8_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00020434g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|443; (*GB) gi|357528933|gb|AET80687.1| (e_value=6e-175) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=5e-45) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=3e-50) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g096800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63910259-63911638 transcript_region:SL2.40ch12:63910259..63911638- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-- Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00020434g0007.1 protein AED:0.09 eAED:0.09 QI:232|0.92|1|1|0.92|0.85|14|269|698; (*GB) gi|225434179|ref|XP_002275474.1| (e_value=0.0) PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Vitis vinifera];; (*SWP) sp|Q5ZK33|LETM1_CHICK (e_value=7e-74) LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1;; (*TAIR) AT3G59820.1 (e_value=0.0) | Symbols: | LETM1-like protein | chr3:22098306-22101759 REVERSE LENGTH=755;; (*ITAG) Solyc12g096810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63912808-63922603 transcript_region:SL2.40ch12:63912808..63922603+ go_terms:GO:0005509 functional_description:"LETM1 and EF-hand domain-containing protein 1, mitochondrial (AHRD V1 *--- LETM1_CHICK); contains Interpro domain(s) IPR011685 LETM1-like "; GO:0005509 NbS00020434g0002.1 protein AED:0.43 eAED:0.59 QI:0|0|0|0.66|1|1|3|0|182; (*GB) gi|255561514|ref|XP_002521767.1| (e_value=5e-14) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=2e-14) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT3G04220.1 (e_value=2e-12) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr3:1109118-1112188 REVERSE LENGTH=867;; (*ITAG) Solyc07g052770.2.1 (e_value=2e-24) genomic_reference:SL2.40ch07 gene_region:58542010-58545879 transcript_region:SL2.40ch07:58542010..58545879+ go_terms:GO:0030275,GO:0000166 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030275,GO:0000166 NbS00025665g0012.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|0|0.5|2|0|382; (*GB) gi|225424039|ref|XP_002279551.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250702 [Vitis vinifera];; (*TAIR) AT1G10880.1 (e_value=1e-128) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3624035-3627021 REVERSE LENGTH=651;; (*ITAG) Solyc05g009130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3251899-3254638 transcript_region:SL2.40ch05:3251899..3254638- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00025665g0011.1 protein AED:0.28 eAED:0.28 QI:160|0.91|0.84|1|1|1|13|553|548; (*GB) gi|224111644|ref|XP_002315930.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XGR8|LACB2_XENLA (e_value=2e-16) Beta-lactamase-like protein 2 OS=Xenopus laevis GN=lactb2 PE=2 SV=1;; (*TAIR) AT1G25375.1 (e_value=0.0) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:8900279-8903220 REVERSE LENGTH=524;; (*ITAG) Solyc05g009140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3254932-3264160 transcript_region:SL2.40ch05:3254932..3264160- go_terms:GO:0016787 functional_description:"Beta-lactamase domain protein (AHRD V1 *-*- D2RPF9_HALTV); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0016787 NbS00025665g0013.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|168; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-41) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g059350.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:49937177-49940525 transcript_region:SL2.40ch09:49937177..49940525- go_terms:GO:0008270 functional_description:"Transposase (Fragment) (AHRD V1 *--- A8BTK4_VITVI); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00025665g0014.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|1|1|3|0|76 NbS00025665g0015.1 protein AED:0.38 eAED:0.39 QI:10|0|0|1|0|0|2|0|149; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025579g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|251; (*GB) gi|225451243|ref|XP_002276425.1| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100253879 [Vitis vinifera];; (*ITAG) Solyc02g083750.1.1 (e_value=7e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41617026-41618291 transcript_region:SL2.40ch02:41617026..41618291- go_terms:GO:0030528 functional_description:"Transcription regulator (AHRD V1 *--* D7L304_ARALY); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; GO:0030528 NbS00060223g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.81|0.5|0.83|1|1|12|0|698; (*GB) gi|22326733|ref|NP_196732.2| (e_value=6e-132) clathrin interactor EPSIN 1 [Arabidopsis thaliana];; (*SWP) sp|Q8VY07|EPN1_ARATH (e_value=2e-133) Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1;; (*TAIR) AT5G11710.1 (e_value=1e-134) | Symbols: | ENTH/VHS family protein | chr5:3772981-3776316 FORWARD LENGTH=560;; (*ITAG) Solyc08g065890.2.1 (e_value=4e-166) genomic_reference:SL2.40ch08 gene_region:51436135-51445764 transcript_region:SL2.40ch08:51436135..51445764- functional_description:"Epsin (AHRD V1 *-*- D3BQV6_POLPA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00026420g0021.1 protein AED:0.15 eAED:0.15 QI:120|1|1|1|0.5|0.2|5|375|451; (*GB) gi|356495352|ref|XP_003516542.1| (e_value=3e-173) PREDICTED: uncharacterized protein LOC100804971 [Glycine max];; (*TAIR) AT2G17840.1 (e_value=4e-154) | Symbols: ERD7 | Senescence/dehydration-associated protein-related | chr2:7755923-7757798 REVERSE LENGTH=452;; (*ITAG) Solyc02g062100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28250883-28256695 transcript_region:SL2.40ch02:28250883..28256695- functional_description:"Senescence-associated protein 12 (AHRD V1 *--- O81657_HEMSP); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00026420g0020.1 protein AED:0.25 eAED:0.25 QI:340|0.5|0.44|1|0.5|0.33|9|196|361; (*GB) gi|225424418|ref|XP_002285048.1| (e_value=2e-165) PREDICTED: vacuolar fusion protein CCZ1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|A7RJI7|CCZ1_NEMVE (e_value=3e-19) Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1;; (*TAIR) AT1G80910.1 (e_value=4e-138) | Symbols: | Protein of unknown function (DUF1712) | chr1:30401143-30403466 FORWARD LENGTH=497;; (*ITAG) Solyc02g062110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28258526-28271917 transcript_region:SL2.40ch02:28258526..28271917- functional_description:"UPF0550 protein C7orf28 homolog (AHRD V1 *-*- CG028_BOVIN); contains Interpro domain(s) IPR019158 Protein of unknown function DUF2049 "; NbS00026420g0017.1 protein AED:0.08 eAED:0.08 QI:92|1|1|1|1|1|2|272|296; (*GB) gi|297734978|emb|CBI17340.3| (e_value=2e-90) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G05800.2 (e_value=2e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:1743234-1744751 REVERSE LENGTH=449;; (*ITAG) Solyc02g061940.2.1 (e_value=4e-146) genomic_reference:SL2.40ch02 gene_region:28070020-28072459 transcript_region:SL2.40ch02:28070020..28072459- functional_description:"Os03g0643100 protein (Fragment) (AHRD V1 *--- Q0DQ23_ORYSJ)"; NbS00026420g0026.1 protein AED:0.20 eAED:0.20 QI:513|0.5|0.4|1|0.5|0.4|5|0|435; (*GB) gi|224094749|ref|XP_002310220.1| (e_value=6e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT5G07610.1 (e_value=4e-12) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc02g062800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29157365-29159581 transcript_region:SL2.40ch02:29157365..29159581- functional_description:"F-box family protein (AHRD V1 ***- D7MPC5_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00026420g0024.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.57|1|0.66|0.71|7|0|455; (*GB) gi|359476577|ref|XP_002267433.2| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK4-like [Vitis vinifera];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=2e-180) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc02g062790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29153654-29156862 transcript_region:SL2.40ch02:29153654..29156862- go_terms:GO:0004672 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00026420g0025.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|284 NbS00032820g0008.1 protein AED:0.01 eAED:0.01 QI:124|1|1|1|1|1|2|140|194; (*GB) gi|319433449|gb|ADV57642.1| (e_value=1e-44) copper binding protein 7 [Gossypium hirsutum];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=2e-33) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=2e-43) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065260.1.1 (e_value=2e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58916089-58917302 transcript_region:SL2.40ch09:58916089..58917302- go_terms:GO:0005515 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00032820g0009.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|196; (*GB) gi|255552341|ref|XP_002517215.1| (e_value=3e-43) Mavicyanin, putative [Ricinus communis];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=2e-37) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=4e-41) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065250.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58911653-58913742 transcript_region:SL2.40ch09:58911653..58913742- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6TCC4_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00007634g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|87; (*ITAG) Solyc06g011460.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00007634g0002.1 protein AED:0.30 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|69 NbS00007634g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|82 NbC26098471g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.83|1|0.6|0.66|6|0|238; (*GB) gi|224127468|ref|XP_002329285.1| (e_value=5e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|O35678|MGLL_MOUSE (e_value=2e-19) Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1;; (*TAIR) AT5G16120.1 (e_value=5e-113) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5266048-5267775 FORWARD LENGTH=351;; (*ITAG) Solyc02g086040.1.1 (e_value=8e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43417622-43420264 transcript_region:SL2.40ch02:43417622..43420264+ go_terms:GO:0004622 functional_description:"Monoglyceride lipase (AHRD V1 **-- B4FK75_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00025759g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.84|0.71|1|0.46|0.78|14|424|490; (*GB) gi|359476844|ref|XP_003631898.1| (e_value=0.0) PREDICTED: probable serine protease EDA2-like [Vitis vinifera];; (*SWP) sp|Q1PF50|EDA2_ARATH (e_value=0.0) Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2;; (*TAIR) AT4G36195.3 (e_value=0.0) | Symbols: | Serine carboxypeptidase S28 family protein | chr4:17127202-17129787 FORWARD LENGTH=488;; (*ITAG) Solyc03g033620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9480412-9491781 transcript_region:SL2.40ch03:9480412..9491781+ go_terms:GO:0004185 functional_description:"Serine carboxypeptidase S28 family protein (AHRD V1 **-* D7MBN8_ARALY); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00001748g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.25|0|1|1|1|5|0|437; (*GB) gi|356522049|ref|XP_003529662.1| (e_value=5e-127) PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=1e-108) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=8e-110) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=1e-145) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00001748g0005.1 protein AED:0.40 eAED:0.40 QI:453|0.4|0.54|0.81|0.9|0.90|11|0|311; (*GB) gi|125542273|gb|EAY88412.1| (e_value=2e-64) hypothetical protein OsI_09872 [Oryza sativa Indica Group];; (*TAIR) AT1G42430.1 (e_value=1e-64) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891512-15894322 FORWARD LENGTH=426;; (*ITAG) Solyc12g094580.1.1 (e_value=7e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63103183-63105695 transcript_region:SL2.40ch12:63103183..63105695- functional_description:"Os03g0133300 protein (Fragment) (AHRD V1 *-*- Q0DVF0_ORYSJ)"; NbS00001748g0003.1 protein AED:0.70 eAED:0.70 QI:0|-1|0|1|-1|1|1|0|152 NbS00001748g0026.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0|0|2|0|140; (*ITAG) Solyc01g059760.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00044346g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=1e-49) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=1e-44) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=8e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00013554g0018.1 protein AED:0.13 eAED:0.13 QI:68|1|1|1|0|0.33|3|429|107; (*GB) gi|225432070|ref|XP_002280639.1| (e_value=1e-51) PREDICTED: probable protein Pop3 [Vitis vinifera];; (*SWP) sp|Q9LUV2|POP3_ARATH (e_value=4e-50) Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1;; (*TAIR) AT3G17210.1 (e_value=3e-51) | Symbols: ATHS1, HS1 | heat stable protein 1 | chr3:5882318-5882896 FORWARD LENGTH=109;; (*ITAG) Solyc05g053310.2.1 (e_value=1e-61) genomic_reference:SL2.40ch05 gene_region:62578841-62580666 transcript_region:SL2.40ch05:62578841..62580666- functional_description:"Stress responsive A/B barrel domain family protein (AHRD V1 ***- D7HD13_VIBCH); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00013554g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|356; (*GB) gi|356521692|ref|XP_003529486.1| (e_value=1e-146) PREDICTED: probable protein phosphatase 2C 13-like [Glycine max];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=2e-134) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.1 (e_value=2e-135) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=383;; (*ITAG) Solyc05g053290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62568720-62571308 transcript_region:SL2.40ch05:62568720..62571308+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase-2C (AHRD V1 ***- O82469_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00013554g0019.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|358; (*GB) gi|44662784|gb|AAS47493.1| (e_value=2e-170) lipoamide dehydrogenase [Capsicum annuum];; (*SWP) sp|Q9M5K3|DLDH1_ARATH (e_value=4e-157) Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2;; (*TAIR) AT1G48030.2 (e_value=3e-158) | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase 1 | chr1:17717432-17719141 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=9e-173) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00013554g0016.1 protein AED:0.17 eAED:0.17 QI:34|1|1|1|1|1|7|354|654; (*GB) gi|225432114|ref|XP_002274418.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 16 [Vitis vinifera];; (*SWP) sp|Q9ASW1|B3GTG_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1;; (*TAIR) AT3G06440.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr3:1972913-1975272 REVERSE LENGTH=619;; (*ITAG) Solyc05g053280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62560445-62565973 transcript_region:SL2.40ch05:62560445..62565973+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta 1 3 galactosyltransferase (AHRD V1 ***- B6TVN8_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00013554g0003.1 protein AED:0.28 eAED:0.28 QI:204|0.72|0.58|0.91|1|1|12|0|702; (*GB) gi|225432124|ref|XP_002264226.1| (e_value=0.0) PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera];; (*SWP) sp|Q9M548|DRM2_ARATH (e_value=1e-91) DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1;; (*TAIR) AT3G17310.1 (e_value=3e-141) | Symbols: DRM3, AtDRM3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:5909294-5912838 REVERSE LENGTH=710;; (*ITAG) Solyc05g053260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62542766-62558988 transcript_region:SL2.40ch05:62542766..62558988+ functional_description:"DNA methyltransferase (AHRD V1 *-*- Q76KU6_TOBAC)"; NbS00029954g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|155|211; (*GB) gi|350536235|ref|NP_001233980.1| (e_value=2e-82) p27KIP1-related-protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=2e-46) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=2e-47) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc09g091780.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:66346096-66349096 transcript_region:SL2.40ch09:66346096..66349096- go_terms:GO:0030332 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 **** Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0030332 NbS00041513g0004.1 protein AED:0.23 eAED:0.24 QI:0|1|0.75|1|0.66|0.75|4|0|218; (*GB) gi|42565125|ref|NP_188924.3| (e_value=6e-120) emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q769F9|TMEDA_DICDI (e_value=1e-25) Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1;; (*TAIR) AT3G22845.1 (e_value=1e-122) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214;; (*ITAG) Solyc09g082770.2.1 (e_value=1e-134) genomic_reference:SL2.40ch09 gene_region:63843639-63848297 transcript_region:SL2.40ch09:63843639..63848297+ go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00041513g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|27529826|dbj|BAC53928.1| (e_value=9e-48) beta-1,3-glucanase-like protein [Nicotiana tabacum];; (*SWP) sp|P52407|E13B_HEVBR (e_value=2e-14) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2;; (*TAIR) AT4G26830.1 (e_value=9e-34) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:13494726-13496487 REVERSE LENGTH=455;; (*ITAG) Solyc12g014420.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5390285-5392254 transcript_region:SL2.40ch12:5390285..5392254+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbC26092387g0003.1 protein AED:0.06 eAED:0.06 QI:104|0.5|0.66|1|1|1|3|0|190; (*GB) gi|225432724|ref|XP_002278974.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100257872 [Vitis vinifera];; (*TAIR) AT3G22620.1 (e_value=5e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8008615-8009415 FORWARD LENGTH=203;; (*ITAG) Solyc03g005210.2.1 (e_value=4e-72) genomic_reference:SL2.40ch03 gene_region:122063-124091 transcript_region:SL2.40ch03:122063..124091+ go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-** B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00020265g0006.1 protein AED:0.32 eAED:0.32 QI:176|1|1|1|0.83|0.71|7|243|219; (*GB) gi|4774163|dbj|BAA77508.1| (e_value=4e-104) F1-ATP synthase delta subunit [Ipomoea batatas];; (*SWP) sp|P22778|ATPO_IPOBA (e_value=1e-104) ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G13450.1 (e_value=3e-74) | Symbols: ATP5 | delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=238;; (*ITAG) Solyc01g087120.2.1 (e_value=2e-128) genomic_reference:SL2.40ch01 gene_region:73799914-73805436 transcript_region:SL2.40ch01:73799914..73805436+ go_terms:GO:0045261 functional_description:"F1-ATP synthase delta subunit (AHRD V1 ***- Q9SXX1_IPOBA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00050698g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|225444619|ref|XP_002275524.1| (e_value=6e-42) PREDICTED: uncharacterized protein LOC100244113 [Vitis vinifera];; (*TAIR) AT5G20820.1 (e_value=3e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7046911-7047294 REVERSE LENGTH=127;; (*ITAG) Solyc07g042490.1.1 (e_value=1e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:53019216-53019608 transcript_region:SL2.40ch07:53019216..53019608- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 ***- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00002237g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|8|131|463; (*GB) gi|225426775|ref|XP_002282807.1| (e_value=0.0) PREDICTED: lysophospholipid acyltransferase [Vitis vinifera];; (*SWP) sp|Q3T1J2|MBOA2_RAT (e_value=2e-39) Membrane-bound O-acyltransferase domain-containing protein 2 OS=Rattus norvegicus GN=Mboat2 PE=2 SV=2;; (*TAIR) AT1G12640.1 (e_value=0.0) | Symbols: | MBOAT (membrane bound O-acyl transferase) family protein | chr1:4303586-4305666 REVERSE LENGTH=462;; (*ITAG) Solyc08g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60819451-60824722 transcript_region:SL2.40ch08:60819451..60824722- go_terms:GO:0008415 functional_description:"Lysophospholipid acyltransferase (AHRD V1 **** B6K7S6_SCHJY); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0008415 NbS00002237g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.66|1|1|1|3|549|281; (*GB) gi|225426781|ref|XP_002282844.1| (e_value=2e-148) PREDICTED: F-box protein PP2-A12 [Vitis vinifera];; (*SWP) sp|Q9LN77|P2A12_ARATH (e_value=5e-127) F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1;; (*TAIR) AT1G12710.1 (e_value=3e-128) | Symbols: AtPP2-A12, PP2-A12 | phloem protein 2-A12 | chr1:4326980-4328324 REVERSE LENGTH=291;; (*ITAG) Solyc08g080360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60829883-60832252 transcript_region:SL2.40ch08:60829883..60832252- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00016977g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.75|1|0|0.5|4|490|340; (*GB) gi|356538299|ref|XP_003537641.1| (e_value=6e-152) PREDICTED: parafibromin-like [Glycine max];; (*SWP) sp|Q5ZLM0|CDC73_CHICK (e_value=2e-17) Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1;; (*TAIR) AT3G22590.1 (e_value=4e-145) | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO PARAFIBROMIN | chr3:8003999-8005452 FORWARD LENGTH=415;; (*ITAG) Solyc06g054080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33411739-33413560 transcript_region:SL2.40ch06:33411739..33413560- functional_description:"RNA polymerase II accessory factor Cdc73 family (AHRD V1 **-- B6JZW2_SCHJY); contains Interpro domain(s) IPR007852 RNA polymerase II accessory factor, Cdc73 "; NbS00016977g0016.1 protein AED:0.21 eAED:0.21 QI:11|1|1|1|0.6|0.66|6|330|247; (*GB) gi|357480895|ref|XP_003610733.1| (e_value=3e-38) hypothetical protein MTR_5g006410 [Medicago truncatula];; (*TAIR) AT1G05430.1 (e_value=3e-14) | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1594227-1595731 REVERSE LENGTH=269;; (*ITAG) Solyc09g082160.2.1 (e_value=2e-82) genomic_reference:SL2.40ch09 gene_region:63374806-63382281 transcript_region:SL2.40ch09:63374806..63382281- functional_description:"Unknown Protein (AHRD V1)"; NbS00016977g0017.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|0.33|0.25|4|0|203; (*GB) gi|359477539|ref|XP_002282896.2| (e_value=3e-23) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera];; (*TAIR) AT3G22600.1 (e_value=4e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc06g054070.2.1 (e_value=7e-43) genomic_reference:SL2.40ch06 gene_region:33408127-33408933 transcript_region:SL2.40ch06:33408127..33408933+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- C6T196_SOYBN); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00013002g0011.1 protein AED:0.22 eAED:0.22 QI:289|0.5|1|1|1|1|3|342|81; (*GB) gi|224084382|ref|XP_002307279.1| (e_value=3e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=1e-28) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=1e-29) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc12g088680.1.1 (e_value=3e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62404569-62406698 transcript_region:SL2.40ch12:62404569..62406698+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00013002g0006.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|343796216|gb|AEM63544.1| (e_value=5e-56) dehydration-responsive element-binding protein DREB2 [Solanum tuberosum];; (*SWP) sp|Q8LC30|RAP21_ARATH (e_value=8e-42) Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1;; (*TAIR) AT1G46768.1 (e_value=6e-43) | Symbols: RAP2.1 | related to AP2 1 | chr1:17266046-17266507 REVERSE LENGTH=153;; (*ITAG) Solyc04g078640.1.1 (e_value=2e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60925634-60926080 transcript_region:SL2.40ch04:60925634..60926080+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00013002g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|83 NbS00013002g0013.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|0|0|2|0|569; (*GB) gi|342306006|dbj|BAK55739.1| (e_value=0.0) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=1e-135) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT2G15490.3 (e_value=3e-120) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc12g088710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62411500-62412957 transcript_region:SL2.40ch12:62411500..62412957- go_terms:GO:0005515,GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0005515,GO:0008152 NbS00036134g0004.1 protein AED:0.33 eAED:0.45 QI:0|0|0.33|1|1|1|3|0|319; (*GB) gi|255550193|ref|XP_002516147.1| (e_value=3e-22) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g025900.2.1 (e_value=6e-65) genomic_reference:SL2.40ch05 gene_region:37515695-37518190 transcript_region:SL2.40ch05:37515695..37518190- functional_description:"MTD1 (AHRD V1 *-*- Q9LLM3_MEDTR)"; NbS00057887g0005.1 protein AED:0.08 eAED:0.08 QI:159|1|0.8|1|0.75|0.8|5|388|648; (*GB) gi|359492313|ref|XP_002278157.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245489 [Vitis vinifera];; (*SWP) sp|Q8W4A7|GUX3_ARATH (e_value=0.0) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1;; (*TAIR) AT1G77130.1 (e_value=0.0) | Symbols: PGSIP2, GUX3 | plant glycogenin-like starch initiation protein 2 | chr1:28979066-28981228 REVERSE LENGTH=618;; (*ITAG) Solyc04g064790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55056558-55061258 transcript_region:SL2.40ch04:55056558..55061258- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00028391g0110.1 protein AED:0.20 eAED:0.22 QI:0|0.71|0.25|1|0.85|0.75|8|0|945 NbC25873455g0003.1 protein AED:0.08 eAED:0.08 QI:31|1|1|1|1|1|2|237|244; (*TAIR) AT1G20440.1 (e_value=7e-11) | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47 | chr1:7084722-7085664 REVERSE LENGTH=265; NbS00033556g0009.1 protein AED:0.04 eAED:0.04 QI:124|0.83|0.85|1|0.5|0.42|7|236|373; (*GB) gi|296088420|emb|CBI37411.3| (e_value=3e-153) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=8e-127) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=6e-128) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc08g075920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57156050-57160619 transcript_region:SL2.40ch08:57156050..57160619- go_terms:GO:0042802,GO:0015250 functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; GO:0042802,GO:0015250 NbS00057777g0002.1 protein AED:0.21 eAED:0.22 QI:2|0|0|1|0|0|4|0|169; (*ITAG) Solyc03g095560.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:50208925-50209659 transcript_region:SL2.40ch03:50208925..50209659+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00056652g0003.1 protein AED:0.72 eAED:0.72 QI:0|0.25|0.11|0.44|1|1|9|13|211; (*GB) gi|225461943|ref|XP_002266112.1| (e_value=5e-30) PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis vinifera];; (*TAIR) AT3G13180.1 (e_value=1e-30) | Symbols: | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | chr3:4236326-4239966 REVERSE LENGTH=523;; (*ITAG) Solyc12g015710.1.1 (e_value=5e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5687873-5695832 transcript_region:SL2.40ch12:5687873..5695832- go_terms:GO:0006355 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 ***- D5H7I5_SALRM); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0006355 NbS00029914g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.66|0.66|1|1|3|235|147; (*GB) gi|224139046|ref|XP_002326754.1| (e_value=1e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31940.1 (e_value=2e-37) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=5e-57) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00029914g0010.1 protein AED:0.14 eAED:0.16 QI:0|0|0|0.66|0|0.33|3|0|465; (*GB) gi|357481175|ref|XP_003610873.1| (e_value=0.0) Diphthamide biosynthesis protein [Medicago truncatula];; (*SWP) sp|Q54PW5|DPH1_DICDI (e_value=7e-110) Diphthamide biosynthesis protein 1 OS=Dictyostelium discoideum GN=dph1 PE=3 SV=1;; (*TAIR) AT5G62030.1 (e_value=0.0) | Symbols: | diphthamide synthesis DPH2 family protein | chr5:24919046-24920407 FORWARD LENGTH=453;; (*ITAG) Solyc06g066300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37979102-37980553 transcript_region:SL2.40ch06:37979102..37980553- go_terms:GO:0005515 functional_description:"Diphthamide biosynthesis protein 1 (AHRD V1 ***- B6TW72_MAIZE); contains Interpro domain(s) IPR016435 Diphthamide synthesis, DHP1 "; GO:0005515 NbS00019837g0008.1 protein AED:0.12 eAED:0.16 QI:306|0.33|0.28|1|0.16|0.28|7|0|1136; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=0.0) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=4e-97) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=2e-52) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc06g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00019837g0007.1 protein AED:0.47 eAED:0.55 QI:0|0|0|1|0|0.5|2|0|113; (*GB) gi|350534820|ref|NP_001234673.1| (e_value=9e-25) TIR1-like protein [Solanum lycopersicum];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=7e-24) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=5e-25) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc09g074520.2.1 (e_value=2e-27) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00061832g0003.1 protein AED:0.16 eAED:0.16 QI:200|1|0.8|1|0.75|0.6|5|631|148; (*GB) gi|351726353|ref|NP_001235332.1| (e_value=1e-106) uncharacterized protein LOC100305945 [Glycine max];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=3e-106) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G53300.4 (e_value=3e-107) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=7e-108) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00034833g0003.1 protein AED:0.04 eAED:0.04 QI:14|0.75|0.8|1|1|1|5|134|454; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=0.0) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92979|APR1_ARATH (e_value=0.0) 5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2;; (*TAIR) AT4G04610.1 (e_value=0.0) | Symbols: APR1, APR, PRH19, ATAPR1 | APS reductase 1 | chr4:2325069-2326718 FORWARD LENGTH=465;; (*ITAG) Solyc02g080640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00034833g0009.1 protein AED:0.06 eAED:0.06 QI:178|1|1|1|0.6|0.5|6|174|123; (*GB) gi|357139629|ref|XP_003571383.1| (e_value=4e-75) PREDICTED: autophagy-related protein 8C-like [Brachypodium distachyon];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=8e-76) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT1G62040.2 (e_value=3e-75) | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133;; (*ITAG) Solyc03g031650.2.1 (e_value=5e-84) genomic_reference:SL2.40ch03 gene_region:8384152-8387089 transcript_region:SL2.40ch03:8384152..8387089- go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00037212g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.83|0.71|0.85|1|1|7|583|261; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=1e-172) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=3e-174) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=4e-148) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=6e-172) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00037212g0007.1 protein AED:0.82 eAED:0.94 QI:81|0|0|0.8|0|0|5|0|206 NbS00007921g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.57|0.85|1|1|7|0|244; (*GB) gi|118488445|gb|ABK96037.1| (e_value=3e-105) unknown [Populus trichocarpa];; (*SWP) sp|O29445|SERA_ARCFU (e_value=2e-18) D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1;; (*TAIR) AT1G72190.1 (e_value=7e-87) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:27167458-27169696 REVERSE LENGTH=373;; (*ITAG) Solyc11g020060.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:10030115-10034259 transcript_region:SL2.40ch11:10030115..10034259- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_MOUSE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00007921g0004.1 protein AED:0.80 eAED:0.90 QI:0|0|0|0.5|1|1|4|0|131 NbS00016621g0009.1 protein AED:0.14 eAED:0.16 QI:0|0.6|0.5|1|0.8|0.66|6|0|310; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=3e-167) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=8e-141) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=6e-142) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58353195-58354906 transcript_region:SL2.40ch07:58353195..58354906+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00016621g0008.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0.33|0.5|4|0|611; (*GB) gi|255568687|ref|XP_002525315.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q8RW96|2A5G_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2;; (*TAIR) AT4G15415.1 (e_value=0.0) | Symbols: ATB' GAMMA | Protein phosphatase 2A regulatory B subunit family protein | chr4:8817707-8819349 FORWARD LENGTH=522;; (*ITAG) Solyc07g049220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56832481-56838208 transcript_region:SL2.40ch07:56832481..56838208+ go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_HUMAN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00000157g0020.1 protein AED:0.18 eAED:0.18 QI:27|0.85|0.72|0.93|0.92|0.86|29|528|1458; (*GB) gi|359487795|ref|XP_002280804.2| (e_value=0.0) PREDICTED: kinesin-related protein 2-like [Vitis vinifera];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=0.0) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT5G27550.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9727634-9731323 REVERSE LENGTH=765;; (*ITAG) Solyc01g098980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81089216-81103000 transcript_region:SL2.40ch01:81089216..81103000- go_terms:GO:0006468,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0006468,GO:0007018 NbS00000157g0022.1 protein AED:0.21 eAED:0.27 QI:176|0.6|0.18|1|0.6|0.63|11|0|479; (*GB) gi|359487795|ref|XP_002280804.2| (e_value=0.0) PREDICTED: kinesin-related protein 2-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=7e-91) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT5G27550.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9727634-9731323 REVERSE LENGTH=765;; (*ITAG) Solyc01g098980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81089216-81103000 transcript_region:SL2.40ch01:81089216..81103000- go_terms:GO:0006468,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0006468,GO:0007018 NbS00000157g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|205; (*GB) gi|1172835|sp|P41918.1|RANA1_TOBAC (e_value=1e-131) RecName: Full=GTP-binding nuclear protein Ran-A1;; (*SWP) sp|P41918|RANA1_TOBAC (e_value=4e-133) GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1;; (*TAIR) AT5G55190.1 (e_value=5e-132) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221;; (*ITAG) Solyc05g023800.2.1 (e_value=2e-131) genomic_reference:SL2.40ch05 gene_region:29353913-29357343 transcript_region:SL2.40ch05:29353913..29357343+ go_terms:GO:0003924 functional_description:"GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR002041 Ran GTPase "; GO:0003924 NbS00000157g0028.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|1|0.5|0.33|3|0|570; (*GB) gi|147866346|emb|CAN81983.1| (e_value=0.0) hypothetical protein VITISV_042631 [Vitis vinifera];; (*SWP) sp|Q9FZ37|GUX4_ARATH (e_value=8e-163) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1;; (*TAIR) AT1G54940.1 (e_value=6e-164) | Symbols: PGSIP4 | plant glycogenin-like starch initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=557;; (*ITAG) Solyc01g098970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81085129-81088524 transcript_region:SL2.40ch01:81085129..81088524+ go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00000157g0029.1 protein AED:0.37 eAED:0.38 QI:0|0.33|0|1|0|0|4|0|285; (*GB) gi|225450971|ref|XP_002280832.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100247620 [Vitis vinifera];; (*SWP) sp|Q9FZ37|GUX4_ARATH (e_value=7e-35) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1;; (*TAIR) AT1G54940.1 (e_value=5e-36) | Symbols: PGSIP4 | plant glycogenin-like starch initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=557;; (*ITAG) Solyc01g098960.1.1 (e_value=7e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81082155-81084023 transcript_region:SL2.40ch01:81082155..81084023+ go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00000157g0027.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|3|0|163; (*GB) gi|224125270|ref|XP_002319544.1| (e_value=4e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ37|GUX4_ARATH (e_value=4e-51) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1;; (*TAIR) AT1G54940.1 (e_value=3e-52) | Symbols: PGSIP4 | plant glycogenin-like starch initiation protein 4 | chr1:20481690-20484541 FORWARD LENGTH=557;; (*ITAG) Solyc01g098960.1.1 (e_value=1e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81082155-81084023 transcript_region:SL2.40ch01:81082155..81084023+ go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00014839g0006.1 protein AED:0.01 eAED:0.01 QI:25|1|1|1|1|1|3|101|170; (*GB) gi|255567021|ref|XP_002524493.1| (e_value=2e-64) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G41475.1 (e_value=7e-56) | Symbols: | Embryo-specific protein 3, (ATS3) | chr2:17295259-17296329 REVERSE LENGTH=179;; (*ITAG) Solyc01g104020.2.1 (e_value=1e-83) genomic_reference:SL2.40ch01 gene_region:84251244-84252164 transcript_region:SL2.40ch01:84251244..84252164+ functional_description:"Embryo-specific 3 (AHRD V1 ***- Q2HUA9_MEDTR); contains Interpro domain(s) IPR010417 Embryo-specific 3 "; NbS00010791g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|681; (*GB) gi|78217441|gb|ABB36796.1| (e_value=0.0) cryptochrome 1 [Nicotiana sylvestris];; (*SWP) sp|Q43125|CRY1_ARATH (e_value=0.0) Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2;; (*TAIR) AT4G08920.1 (e_value=0.0) | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome 1 | chr4:5724260-5726905 FORWARD LENGTH=681;; (*ITAG) Solyc04g074180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57772528-57777909 transcript_region:SL2.40ch04:57772528..57777909+ go_terms:GO:0042803 functional_description:"Cryptochrome 1a"; GO:0042803 NbS00010791g0011.1 protein AED:0.07 eAED:0.09 QI:0|0.66|0.5|1|0.66|0.5|4|0|358; (*GB) gi|224084666|ref|XP_002307380.1| (e_value=3e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=9e-72) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT1G34670.1 (e_value=1e-99) | Symbols: AtMYB93, MYB93 | myb domain protein 93 | chr1:12709128-12710423 FORWARD LENGTH=365;; (*ITAG) Solyc04g074170.1.1 (e_value=2e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57755497-57757061 transcript_region:SL2.40ch04:57755497..57757061+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00010240g0016.1 protein AED:0.21 eAED:0.21 QI:69|0.83|0.71|1|0.33|0.28|7|0|462; (*GB) gi|350539625|ref|NP_001234737.1| (e_value=0.0) putative brassinosteroid hydroxylase [Solanum lycopersicum];; (*SWP) sp|O48786|C734A_ARATH (e_value=0.0) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=0.0) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc12g006860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1297046-1301535 transcript_region:SL2.40ch12:1297046..1301535+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010240g0013.1 protein AED:0.30 eAED:0.30 QI:88|1|1|1|0.75|0.8|5|481|124; (*GB) gi|388492300|gb|AFK34216.1| (e_value=2e-47) unknown [Lotus japonicus];; (*TAIR) AT5G20060.3 (e_value=4e-45) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252;; (*ITAG) Solyc12g006870.1.1 (e_value=3e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1315304-1322819 transcript_region:SL2.40ch12:1315304..1322819+ go_terms:GO:0016787 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0016787 NbS00010240g0014.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|1|0.75|4|0|220; (*GB) gi|255566925|ref|XP_002524445.1| (e_value=6e-119) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=9e-81) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT4G17486.1 (e_value=7e-82) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:9749992-9751201 REVERSE LENGTH=224;; (*ITAG) Solyc12g006880.1.1 (e_value=3e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1323811-1329389 transcript_region:SL2.40ch12:1323811..1329389- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00013902g0007.1 protein AED:0.15 eAED:0.20 QI:0|0.37|0.44|1|0.37|0.22|9|0|514; (*GB) gi|225425507|ref|XP_002263966.1| (e_value=5e-78) PREDICTED: transcription factor ABORTED MICROSPORES-like [Vitis vinifera];; (*ITAG) Solyc08g062780.1.1 (e_value=3e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:49108548-49112020 transcript_region:SL2.40ch08:49108548..49112020+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00013902g0008.1 protein AED:0.23 eAED:0.31 QI:73|0.5|0.42|0.85|0.5|0.42|7|0|426; (*GB) gi|225470654|ref|XP_002268214.1| (e_value=7e-134) PREDICTED: uncharacterized protein LOC100258883 [Vitis vinifera];; (*TAIR) AT2G26200.1 (e_value=3e-125) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11152875-11156330 FORWARD LENGTH=565;; (*ITAG) Solyc08g062770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49090923-49107311 transcript_region:SL2.40ch08:49090923..49107311+ functional_description:"Methyltransferase-like protein 6 (AHRD V1 *-*- B5X6R8_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00030339g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.62|0.33|1|0.75|0.77|9|0|2051; (*GB) gi|359495455|ref|XP_002274761.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264735 [Vitis vinifera];; (*SWP) sp|Q8IZQ1|WDFY3_HUMAN (e_value=2e-178) WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2;; (*TAIR) AT1G03060.1 (e_value=0.0) | Symbols: SPI | Beige/BEACH domain ;WD domain, G-beta repeat protein | chr1:712971-726891 REVERSE LENGTH=3601;; (*ITAG) Solyc09g065700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59538692-59559305 transcript_region:SL2.40ch09:59538692..59559305+ go_terms:GO:0005488 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0005488 NbS00030339g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.62|1|0.86|0.81|16|0|1599; (*GB) gi|356500162|ref|XP_003518902.1| (e_value=0.0) PREDICTED: BEACH domain-containing protein lvsA-like [Glycine max];; (*SWP) sp|Q55DM1|LVSA_DICDI (e_value=2e-17) BEACH domain-containing protein lvsA OS=Dictyostelium discoideum GN=lvsA PE=4 SV=2;; (*TAIR) AT1G03060.1 (e_value=0.0) | Symbols: SPI | Beige/BEACH domain ;WD domain, G-beta repeat protein | chr1:712971-726891 REVERSE LENGTH=3601;; (*ITAG) Solyc09g065700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59538692-59559305 transcript_region:SL2.40ch09:59538692..59559305+ go_terms:GO:0005488 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0005488 NbS00056343g0003.1 protein AED:0.35 eAED:0.36 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|76161012|gb|ABA40469.1| (e_value=3e-111) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q9FDZ9|RL212_ARATH (e_value=3e-102) 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1;; (*TAIR) AT1G57860.1 (e_value=2e-103) | Symbols: | Translation protein SH3-like family protein | chr1:21430034-21430827 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=4e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00028906g0101.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|251 NbS00012694g0009.1 protein AED:0.22 eAED:0.22 QI:1752|1|0.75|1|0.66|0.75|4|0|139; (*GB) gi|224141259|ref|XP_002323992.1| (e_value=3e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1AU63|RL13_RUBXD (e_value=1e-18) 50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2;; (*TAIR) AT3G01790.2 (e_value=2e-63) | Symbols: | Ribosomal protein L13 family protein | chr3:283880-285583 REVERSE LENGTH=205;; (*ITAG) Solyc09g092090.2.1 (e_value=1e-87) genomic_reference:SL2.40ch09 gene_region:66585421-66588411 transcript_region:SL2.40ch09:66585421..66588411+ go_terms:GO:0003735 functional_description:"50S ribosomal protein L13 (AHRD V1 ***- B6TQ75_MAIZE); contains Interpro domain(s) IPR005823 Ribosomal protein L13, bacterial-type "; GO:0003735 NbS00035808g0011.1 protein AED:0.23 eAED:0.23 QI:399|1|1|1|0.8|0.66|6|61|291; (*GB) gi|255538628|ref|XP_002510379.1| (e_value=2e-161) transporter, putative [Ricinus communis];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=3e-34) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G75170.2 (e_value=4e-153) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc04g080290.2.1 (e_value=2e-172) genomic_reference:SL2.40ch04 gene_region:62123183-62125819 transcript_region:SL2.40ch04:62123183..62125819+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00035808g0010.1 protein AED:0.67 eAED:0.75 QI:0|0|0|0.5|1|1|4|0|126; (*GB) gi|2275256|gb|AAD09831.1| (e_value=4e-20) unknown [Nicotiana tabacum]; NbS00035808g0013.1 protein AED:0.12 eAED:0.12 QI:47|0.5|0.33|1|0.5|0.33|3|0|321; (*GB) gi|225458293|ref|XP_002282654.1| (e_value=7e-150) PREDICTED: uncharacterized protein At1g01500-like [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=2e-52) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G75180.3 (e_value=6e-119) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:28216150-28217911 REVERSE LENGTH=315;; (*ITAG) Solyc12g089140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62695311-62698109 transcript_region:SL2.40ch12:62695311..62698109- functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00035808g0015.1 protein AED:0.14 eAED:0.14 QI:148|0.5|0.66|1|0.5|1|3|562|190; (*GB) gi|224132122|ref|XP_002321261.1| (e_value=3e-82) hypothetical protein POPTRDRAFT_573245 [Populus trichocarpa];; (*SWP) sp|Q8H0Y1|OP24B_ARATH (e_value=3e-79) Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana GN=OEP24B PE=1 SV=1;; (*TAIR) AT5G42960.1 (e_value=2e-80) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:17235184-17236478 FORWARD LENGTH=213;; (*ITAG) Solyc04g080190.2.1 (e_value=7e-91) genomic_reference:SL2.40ch04 gene_region:62042172-62045855 transcript_region:SL2.40ch04:62042172..62045855- functional_description:"Pore protein of (OEP24) (AHRD V1 **-- O49929_PEA)"; NbS00061139g0003.1 protein AED:0.31 eAED:0.35 QI:502|0.33|0.5|1|1|1|4|37|98 NbS00021883g0004.1 protein AED:0.17 eAED:0.32 QI:0|0|0|1|0.33|0.5|4|0|340; (*GB) gi|147866080|emb|CAN80959.1| (e_value=6e-46) hypothetical protein VITISV_037562 [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=1e-12) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=1e-13) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc01g094820.2.1 (e_value=2e-103) genomic_reference:SL2.40ch01 gene_region:77988011-77992084 transcript_region:SL2.40ch01:77988011..77992084- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 **-- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00024035g0006.1 protein AED:0.36 eAED:0.36 QI:24|1|0.83|1|1|1|6|210|143; (*GB) gi|75298577|sp|Q852S5.1|NDK2_TOBAC (e_value=4e-92) RecName: Full=Nucleoside diphosphate kinase 2, chloroplastic; AltName: Full=Nucleoside diphosphate kinase II; Short=NDK II; Short=NDP kinase II; Short=NDPK II; Flags: Precursor;; (*SWP) sp|Q852S5|NDK2_TOBAC (e_value=1e-93) Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1;; (*TAIR) AT5G63310.1 (e_value=5e-83) | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2 | nucleoside diphosphate kinase 2 | chr5:25372122-25373838 REVERSE LENGTH=231;; (*ITAG) Solyc06g071960.2.1 (e_value=6e-96) genomic_reference:SL2.40ch06 gene_region:40715662-40718800 transcript_region:SL2.40ch06:40715662..40718800- go_terms:GO:0004550 functional_description:"Nucleoside diphosphate kinase (AHRD V1 **** B9RAM1_RICCO); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0004550 NbS00024035g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|402; (*GB) gi|188509920|gb|ACD56609.1| (e_value=0.0) putative integral membrane protein [Gossypioides kirkii];; (*SWP) sp|Q9S845|GONS3_ARATH (e_value=0.0) GDP-mannose transporter GONST3 OS=Arabidopsis thaliana GN=GONST3 PE=2 SV=1;; (*TAIR) AT1G76340.1 (e_value=0.0) | Symbols: GONST3 | golgi nucleotide sugar transporter 3 | chr1:28635188-28636306 REVERSE LENGTH=372;; (*ITAG) Solyc06g071950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40714305-40715258 transcript_region:SL2.40ch06:40714305..40715258+ functional_description:"At5g19980 (Fragment) (AHRD V1 ***- Q84L08_ARATH)"; NbS00003732g0003.1 protein AED:0.21 eAED:0.23 QI:0|0.75|0.6|1|0.75|0.6|5|554|170; (*GB) gi|370988687|dbj|BAL43557.1| (e_value=8e-81) type-A response regulator [Petunia x hybrida];; (*SWP) sp|O80366|ARR9_ARATH (e_value=6e-65) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=4e-66) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc10g079600.1.1 (e_value=1e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60427395-60429006 transcript_region:SL2.40ch10:60427395..60429006- go_terms:GO:0006355 functional_description:"Response regulator 6 (AHRD V1 ***- Q9FRY9_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00035825g0002.1 protein AED:0.18 eAED:0.22 QI:516|0.5|0.71|1|0.83|0.71|7|240|466; (*GB) gi|356519574|ref|XP_003528447.1| (e_value=6e-121) PREDICTED: protein Brevis radix-like 2-like [Glycine max];; (*SWP) sp|Q8GYL9|BRXL2_ARATH (e_value=3e-104) Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1;; (*TAIR) AT1G54180.2 (e_value=1e-109) | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3 | chr1:20227697-20229728 FORWARD LENGTH=344;; (*ITAG) Solyc06g062880.1.1 (e_value=7e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36075443-36081569 transcript_region:SL2.40ch06:36075443..36081569+ functional_description:"Protein Brevis radix-like 2 (AHRD V1 ***- BRXL2_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; NbS00039848g0005.1 protein AED:0.31 eAED:0.31 QI:260|1|1|1|0.5|0.85|7|99|284; (*GB) gi|255581514|ref|XP_002531563.1| (e_value=2e-150) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q93VV0|ZDHC6_ARATH (e_value=2e-137) Probable S-acyltransferase At3g09320 OS=Arabidopsis thaliana GN=At3g09320 PE=2 SV=1;; (*TAIR) AT3G09320.1 (e_value=2e-138) | Symbols: | DHHC-type zinc finger family protein | chr3:2862142-2864113 REVERSE LENGTH=286;; (*ITAG) Solyc10g084820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63543483-63547030 transcript_region:SL2.40ch10:63543483..63547030- go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00039848g0006.1 protein AED:0.27 eAED:0.39 QI:8|0.33|0|1|0|0|4|0|273; (*GB) gi|359481764|ref|XP_002269038.2| (e_value=5e-85) PREDICTED: laccase-17 isoform 1 [Vitis vinifera];; (*SWP) sp|O81081|LAC2_ARATH (e_value=2e-77) Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1;; (*TAIR) AT2G29130.1 (e_value=1e-78) | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12525189-12527699 REVERSE LENGTH=573;; (*ITAG) Solyc09g011970.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00039848g0007.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0|3|0|262; (*GB) gi|224090738|ref|XP_002309069.1| (e_value=2e-107) laccase 110c [Populus trichocarpa];; (*SWP) sp|Q10ND7|LAC10_ORYSJ (e_value=2e-88) Laccase-10 OS=Oryza sativa subsp. japonica GN=LAC10 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=2e-89) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011970.1.1 (e_value=4e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00054331g0004.1 protein AED:0.32 eAED:0.36 QI:0|1|0.8|1|0.5|0.8|5|575|151; (*GB) gi|356575261|ref|XP_003555760.1| (e_value=2e-34) PREDICTED: transcription factor bHLH104-like [Glycine max];; (*SWP) sp|Q9LTC7|BH034_ARATH (e_value=1e-24) Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1;; (*TAIR) AT3G23210.1 (e_value=8e-26) | Symbols: bHLH34 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8283255-8284915 REVERSE LENGTH=320;; (*ITAG) Solyc09g089870.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:64838719-64843480 transcript_region:SL2.40ch09:64838719..64843480- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKE6_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbC26179326g0005.1 protein AED:0.38 eAED:0.38 QI:198|0.5|0.4|0.6|1|0.8|5|0|322; (*GB) gi|225434528|ref|XP_002276394.1| (e_value=5e-148) PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Vitis vinifera];; (*SWP) sp|Q9MB58|F26_ARATH (e_value=6e-100) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Arabidopsis thaliana GN=FKFBP PE=1 SV=1;; (*TAIR) AT1G07110.1 (e_value=5e-101) | Symbols: F2KP, ATF2KP, FKFBP | fructose-2,6-bisphosphatase | chr1:2178363-2183980 REVERSE LENGTH=744;; (*ITAG) Solyc06g082150.2.1 (e_value=6e-155) genomic_reference:SL2.40ch06 gene_region:44342666-44357079 transcript_region:SL2.40ch06:44342666..44357079+ go_terms:GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 functional_description:"6-phosphofructo-2-kinase/fructose-2 6-biphosphatase 4 (AHRD V1 *-*- Q7T325_DANRE); contains Interpro domain(s) IPR016260 Bifunctional 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphate 2-phosphatase "; GO:0030246,GO:0008152,GO:0006000,GO:0006003,GO:0005975 NbS00011482g0010.1 protein AED:0.17 eAED:0.24 QI:0|0|0|1|1|1|2|0|218; (*GB) gi|297843384|ref|XP_002889573.1| (e_value=9e-42) hypothetical protein ARALYDRAFT_470601 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L829|ARI5_ARATH (e_value=1e-40) Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1;; (*TAIR) AT1G05890.1 (e_value=1e-41) | Symbols: ARI5, ATARI5 | RING/U-box superfamily protein | chr1:1779631-1784166 FORWARD LENGTH=552;; (*ITAG) Solyc06g073340.2.1 (e_value=7e-42) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00011482g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|3|0|524; (*GB) gi|255536795|ref|XP_002509464.1| (e_value=0.0) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|P56820|EIF3D_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1;; (*TAIR) AT4G20980.4 (e_value=0.0) | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591;; (*ITAG) Solyc02g078120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37474003-37475736 transcript_region:SL2.40ch02:37474003..37475736- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 7 (AHRD V1 ***- Q9FKV6_ARATH); contains Interpro domain(s) IPR007783 Eukaryotic translation initiation factor 3, subunit 7 "; GO:0005515 NbS00026728g0009.1 protein AED:0.20 eAED:0.20 QI:525|0.8|0.81|1|0.6|0.63|11|435|403; (*GB) gi|356543936|ref|XP_003540414.1| (e_value=0.0) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=2e-35) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT4G27100.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:13595845-13598620 FORWARD LENGTH=433;; (*ITAG) Solyc07g064230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63680396-63685600 transcript_region:SL2.40ch07:63680396..63685600- go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00008005g0007.1 protein AED:0.23 eAED:0.23 QI:321|1|1|1|1|1|2|535|230; (*GB) gi|22947842|gb|AAN07899.1| (e_value=4e-154) 20S proteasome alpha 6 subunit [Nicotiana benthamiana];; (*SWP) sp|P34066|PSA1A_ARATH (e_value=2e-144) Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3;; (*TAIR) AT5G42790.1 (e_value=1e-145) | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha subunit F1 | chr5:17159270-17160975 REVERSE LENGTH=278;; (*ITAG) Solyc04g080590.2.1 (e_value=1e-155) genomic_reference:SL2.40ch04 gene_region:62295025-62299348 transcript_region:SL2.40ch04:62295025..62299348- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q8H1Y2_NICBE); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00008005g0012.1 protein AED:0.24 eAED:0.24 QI:294|0.85|0.87|1|0.85|0.75|8|0|257; (*GB) gi|8096273|dbj|BAA95791.1| (e_value=3e-160) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G75380.3 (e_value=1e-103) | Symbols: ATBBD1, BBD1 | bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325;; (*ITAG) Solyc12g089220.1.1 (e_value=6e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62767870-62771271 transcript_region:SL2.40ch12:62767870..62771271- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00008005g0002.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.25|1|1|1|4|0|313; (*GB) gi|118482555|gb|ABK93198.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|O50039|OTC_ARATH (e_value=0.0) Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2;; (*TAIR) AT1G75330.1 (e_value=0.0) | Symbols: OTC | ornithine carbamoyltransferase | chr1:28266457-28268383 REVERSE LENGTH=375;; (*ITAG) Solyc12g089210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62761961-62766160 transcript_region:SL2.40ch12:62761961..62766160- go_terms:GO:0009348,GO:0006520 functional_description:"Ornithine carbamoyltransferase (AHRD V1 ***- Q9SEX4_CANLI); contains Interpro domain(s) IPR002292 Ornithine carbamoyltransferase "; GO:0009348,GO:0006520 NbC25639057g0004.1 protein AED:0.55 eAED:0.63 QI:0|0.33|0|0.75|1|1|4|0|94; (*GB) gi|137460|sp|P09469.1|VATA_DAUCA (e_value=2e-51) RecName: Full=V-type proton ATPase catalytic subunit A; Short=V-ATPase subunit A; AltName: Full=V-ATPase 69 kDa subunit; AltName: Full=Vacuolar proton pump subunit alpha;; (*SWP) sp|P09469|VATA_DAUCA (e_value=6e-53) V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G78900.2 (e_value=1e-49) | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623;; (*ITAG) Solyc12g055800.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47132031-47139706 transcript_region:SL2.40ch12:47132031..47139706- go_terms:GO:0046961 functional_description:"V-type ATP synthase alpha chain (AHRD V1 ***- VATA_METTH); contains Interpro domain(s) IPR005725 ATPase, V1 complex, subunit A "; GO:0046961 NbS00000325g0004.1 protein AED:0.10 eAED:0.16 QI:0|0.66|0.28|1|0.5|0.42|7|0|484; (*GB) gi|187438929|gb|ACD10924.1| (e_value=0.0) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q50EK3|C04C1_PINTA (e_value=3e-116) Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1;; (*TAIR) AT1G69500.1 (e_value=0.0) | Symbols: CYP704B1 | cytochrome P450, family 704, subfamily B, polypeptide 1 | chr1:26123960-26125909 FORWARD LENGTH=524;; (*ITAG) Solyc01g010900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6355196-6360236 transcript_region:SL2.40ch01:6355196..6360236- go_terms:GO:0019825,GO:0018685 functional_description:"Cytochrome P450"; GO:0019825,GO:0018685 NbS00055702g0005.1 protein AED:0.23 eAED:0.25 QI:0|1|0.66|1|1|1|6|0|803; (*GB) gi|225458593|ref|XP_002282663.1| (e_value=4e-74) PREDICTED: uncharacterized protein LOC100266011 [Vitis vinifera];; (*SWP) sp|Q99PI4|LPIN3_MOUSE (e_value=7e-36) Phosphatidate phosphatase LPIN3 OS=Mus musculus GN=Lpin3 PE=1 SV=1;; (*TAIR) AT5G42870.1 (e_value=1e-70) | Symbols: ATPAH2, PAH2 | phosphatidic acid phosphohydrolase 2 | chr5:17185719-17189681 REVERSE LENGTH=930;; (*ITAG) Solyc04g079100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61275276-61283791 transcript_region:SL2.40ch04:61275276..61283791- functional_description:"Lipin family protein (AHRD V1 *--- D7MQT4_ARALY); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; NbS00018391g0004.1 protein AED:0.13 eAED:0.28 QI:0|0.75|0.8|1|0.75|0.6|5|484|124; (*GB) gi|225426428|ref|XP_002270198.1| (e_value=6e-39) PREDICTED: uncharacterized protein LOC100263372 isoform 1 [Vitis vinifera];; (*TAIR) AT4G23330.2 (e_value=7e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314). | chr4:12192136-12193383 FORWARD LENGTH=147;; (*ITAG) Solyc08g081130.2.1 (e_value=8e-62) genomic_reference:SL2.40ch08 gene_region:61380523-61384815 transcript_region:SL2.40ch08:61380523..61384815+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003584g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|0|1218; (*GB) gi|255543813|ref|XP_002512969.1| (e_value=0.0) coatomer alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=0.0) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=0.0) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00004596g0007.1 protein AED:0.19 eAED:0.19 QI:623|1|1|1|0.6|0.72|11|582|616; (*GB) gi|315258229|gb|ADT91693.1| (e_value=0.0) BRI1-associated receptor kinase 1 [Nicotiana attenuata];; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT4G33430.1 (e_value=0.0) | Symbols: BAK1, RKS10, SERK3, ELG, ATSERK3, ATBAK1 | BRI1-associated receptor kinase | chr4:16086654-16090288 REVERSE LENGTH=615;; (*ITAG) Solyc01g104970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85050880-85059382 transcript_region:SL2.40ch01:85050880..85059382+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004596g0009.1 protein AED:0.45 eAED:0.49 QI:51|0|0.5|1|0|0|2|0|172; (*GB) gi|302141908|emb|CBI19111.3| (e_value=9e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G22040.1 (e_value=3e-13) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:7768370-7769797 FORWARD LENGTH=475;; (*ITAG) Solyc01g104980.2.1 (e_value=9e-42) genomic_reference:SL2.40ch01 gene_region:85060063-85062095 transcript_region:SL2.40ch01:85060063..85062095- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00004596g0008.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|343; (*GB) gi|225447858|ref|XP_002271882.1| (e_value=1e-161) PREDICTED: F-box/kelch-repeat protein At1g22040-like [Vitis vinifera];; (*SWP) sp|Q9LM55|FBK8_ARATH (e_value=2e-144) F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1;; (*TAIR) AT1G22040.1 (e_value=2e-145) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:7768370-7769797 FORWARD LENGTH=475;; (*ITAG) Solyc01g104980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85060063-85062095 transcript_region:SL2.40ch01:85060063..85062095- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00040852g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.72|0.90|0.8|0.81|11|0|388; (*GB) gi|225446410|ref|XP_002275626.1| (e_value=0.0) PREDICTED: tryptophanyl-tRNA synthetase, cytoplasmic [Vitis vinifera];; (*SWP) sp|P23381|SYWC_HUMAN (e_value=4e-168) Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2;; (*TAIR) AT3G04600.3 (e_value=0.0) | Symbols: | Nucleotidylyl transferase superfamily protein | chr3:1243152-1245958 FORWARD LENGTH=402;; (*ITAG) Solyc08g074410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55693755-55701940 transcript_region:SL2.40ch08:55693755..55701940+ go_terms:GO:0005515,GO:0004830 functional_description:"Tryptophanyl-tRNA synthetase (AHRD V1 **** B6T773_MAIZE); contains Interpro domain(s) IPR002306 Tryptophanyl-tRNA synthetase, class Ib "; GO:0005515,GO:0004830 NbS00026779g0006.1 protein AED:0.36 eAED:0.57 QI:2|-1|0|1|-1|1|1|0|72; (*GB) gi|48210044|gb|AAT40543.1| (e_value=2e-14) Putative two-component response regulator protein, identical [Solanum demissum]; NbS00026779g0009.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|0|0.5|2|0|90 NbS00026779g0010.1 protein AED:0.60 eAED:0.77 QI:0|0|0|0.33|0.5|0.66|3|0|343; (*GB) gi|297741111|emb|CBI31842.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=6e-24) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=5e-25) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc11g072330.1.1 (e_value=1e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:52622729-52628560 transcript_region:SL2.40ch11:52622729..52628560+ go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 ***- Q9AV93_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0006355,GO:0045449 NbS00036840g0002.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|1|2|0|130; (*ITAG) Solyc10g049530.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00036840g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.85|1|0.5|0.57|7|356|297; (*GB) gi|225435806|ref|XP_002285757.1| (e_value=6e-129) PREDICTED: uncharacterized protein LOC100265613 [Vitis vinifera];; (*TAIR) AT4G26370.1 (e_value=2e-107) | Symbols: | antitermination NusB domain-containing protein | chr4:13334099-13336153 REVERSE LENGTH=301;; (*ITAG) Solyc01g028870.2.1 (e_value=4e-166) genomic_reference:SL2.40ch01 gene_region:33675673-33684181 transcript_region:SL2.40ch01:33675673..33684181+ go_terms:GO:0006355 functional_description:"N utilization substance protein B homolog (AHRD V1 *-*- D5S311_CLODI); contains Interpro domain(s) IPR006027 NusB/RsmB/TIM44 "; GO:0006355 NbS00019511g0007.1 protein AED:0.09 eAED:0.12 QI:0|0.71|0.5|1|0.71|0.75|8|0|505; (*GB) gi|359497499|ref|XP_003635541.1| (e_value=1e-171) PREDICTED: AP2-like ethylene-responsive transcription factor AIL6-like [Vitis vinifera];; (*SWP) sp|Q52QU2|AIL6_ARATH (e_value=7e-143) AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1;; (*TAIR) AT5G10510.2 (e_value=6e-144) | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991-3320008 FORWARD LENGTH=581;; (*ITAG) Solyc11g010710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3758647-3764093 transcript_region:SL2.40ch11:3758647..3764093+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00004049g0013.1 protein AED:0.28 eAED:0.29 QI:0|0.25|0|1|0.25|0.6|5|0|875; (*GB) gi|145839451|gb|ABP96804.1| (e_value=0.0) receptor-like protein kinase [Capsicum annuum];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-126) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G67000.1 (e_value=1e-127) | Symbols: | Protein kinase superfamily protein | chr1:25004217-25007604 REVERSE LENGTH=892;; (*ITAG) Solyc05g009090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3230564-3232618 transcript_region:SL2.40ch05:3230564..3232618+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004049g0011.1 protein AED:0.32 eAED:0.32 QI:351|1|0.88|1|1|0.88|9|0|364; (*GB) gi|297737781|emb|CBI26982.3| (e_value=4e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54FU9|MCFW_DICDI (e_value=6e-61) Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1;; (*TAIR) AT1G25380.1 (e_value=1e-145) | Symbols: ATNDT2, NDT2 | NAD+ transporter 2 | chr1:8903726-8905818 FORWARD LENGTH=363;; (*ITAG) Solyc05g009020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3185966-3192366 transcript_region:SL2.40ch05:3185966..3192366- go_terms:GO:0051724 functional_description:"Mitochondrial carrier like protein (AHRD V1 ***- Q4A3J5_ARATH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0051724 NbS00004049g0012.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.33|3|0|605; (*GB) gi|147811712|emb|CAN65965.1| (e_value=4e-166) hypothetical protein VITISV_005934 [Vitis vinifera];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=5e-122) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G25390.1 (e_value=8e-143) | Symbols: | Protein kinase superfamily protein | chr1:8906640-8908800 REVERSE LENGTH=629;; (*ITAG) Solyc05g008940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3148903-3152133 transcript_region:SL2.40ch05:3148903..3152133+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007940g0007.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-72) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=2e-44) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=1e-45) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007280.2.1 (e_value=2e-84) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00007940g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|0.5|0.66|0.5|4|140|125; (*GB) gi|292679519|dbj|BAI99301.1| (e_value=6e-30) putative methionine synthase [Shorea bullata];; (*SWP) sp|Q42662|METE_SOLSC (e_value=5e-29) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2;; (*TAIR) AT5G20980.2 (e_value=7e-26) | Symbols: ATMS3, MS3 | methionine synthase 3 | chr5:7124397-7128353 REVERSE LENGTH=812;; (*ITAG) Solyc01g009180.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbC25841022g0004.1 protein AED:0.86 eAED:0.93 QI:0|0|0|0.75|1|0.5|4|0|231; (*GB) gi|225439408|ref|XP_002263824.1| (e_value=7e-48) PREDICTED: uncharacterized protein LOC100257563 [Vitis vinifera];; (*TAIR) AT5G05570.1 (e_value=7e-23) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1124;; (*ITAG) Solyc09g005600.2.1 (e_value=1e-117) genomic_reference:SL2.40ch09 gene_region:406341-420961 transcript_region:SL2.40ch09:406341..420961- go_terms:GO:0000166 functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 *--- L2GL2_PONAB); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00035952g0003.1 protein AED:0.02 eAED:0.02 QI:103|1|0.5|1|1|1|2|0|92; (*GB) gi|297827635|ref|XP_002881700.1| (e_value=5e-25) early methionine-labelled 6 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q02973|EM6_ARATH (e_value=9e-26) Em-like protein GEA6 OS=Arabidopsis thaliana GN=EM6 PE=1 SV=1;; (*TAIR) AT2G40170.1 (e_value=7e-27) | Symbols: ATEM6, GEA6, EM6 | Stress induced protein | chr2:16779792-16780167 REVERSE LENGTH=92;; (*ITAG) Solyc06g048840.2.1 (e_value=2e-28) genomic_reference:SL2.40ch06 gene_region:28315979-28316547 transcript_region:SL2.40ch06:28315979..28316547- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- A4VBF1_9FABA); contains Interpro domain(s) IPR000389 Small hydrophilic plant seed protein "; NbS00044004g0001.1 protein AED:0.26 eAED:0.27 QI:0|1|0|1|1|1|2|0|300; (*GB) gi|225458684|ref|XP_002284938.1| (e_value=2e-121) PREDICTED: protein SSH4-like [Vitis vinifera];; (*TAIR) AT4G06536.1 (e_value=8e-53) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr4:3360746-3361255 FORWARD LENGTH=169;; (*ITAG) Solyc04g078630.2.1 (e_value=7e-155) genomic_reference:SL2.40ch04 gene_region:60908009-60911019 transcript_region:SL2.40ch04:60908009..60911019- functional_description:"SPRY domain-containing protein (AHRD V1 *-*- B6JYC6_SCHJY)"; NbS00060722g0001.1 protein AED:0.03 eAED:0.03 QI:17|0.75|0.8|1|0.75|0.6|5|138|301; (*GB) gi|255554132|ref|XP_002518106.1| (e_value=2e-100) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q4PSN0|PME29_ARATH (e_value=6e-93) Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1;; (*TAIR) AT3G24130.1 (e_value=4e-94) | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335;; (*ITAG) Solyc09g091730.2.1 (e_value=4e-159) genomic_reference:SL2.40ch09 gene_region:66310129-66313134 transcript_region:SL2.40ch09:66310129..66313134- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9RWI7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00060722g0010.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|468; (*GB) gi|225445486|ref|XP_002285167.1| (e_value=8e-173) PREDICTED: NADP-dependent alkenal double bond reductase P1 [Vitis vinifera];; (*SWP) sp|Q39173|P2_ARATH (e_value=7e-112) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT5G16990.1 (e_value=5e-113) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343;; (*ITAG) Solyc09g091700.2.1 (e_value=5e-167) genomic_reference:SL2.40ch09 gene_region:66290352-66291649 transcript_region:SL2.40ch09:66290352..66291649+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* B4RDK4_PHEZH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00018784g0006.1 protein AED:0.21 eAED:0.21 QI:559|1|0.92|1|0.92|0.92|14|0|464; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=0.0) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc09g090250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65131585-65137092 transcript_region:SL2.40ch09:65131585..65137092+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00018784g0002.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|70 NbS00014652g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.66|1|1|3|0|301; (*GB) gi|225429230|ref|XP_002263595.1| (e_value=1e-99) PREDICTED: DNA polymerase V-like [Vitis vinifera];; (*TAIR) AT5G64420.1 (e_value=4e-81) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=1e-130) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00014652g0001.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|1|1|2|0|122; (*GB) gi|356549489|ref|XP_003543126.1| (e_value=1e-42) PREDICTED: DNA polymerase V-like isoform 1 [Glycine max];; (*TAIR) AT5G64420.1 (e_value=3e-35) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=9e-55) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00012871g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|0.5|0.33|3|0|335; (*GB) gi|297745177|emb|CBI39169.3| (e_value=5e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G54380.1 (e_value=2e-40) | Symbols: | spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515;; (*ITAG) Solyc09g098560.2.1 (e_value=1e-103) genomic_reference:SL2.40ch09 gene_region:67626581-67634305 transcript_region:SL2.40ch09:67626581..67634305+ go_terms:GO:0000398 functional_description:"Survival motor neuron containing protein (AHRD V1 ***- B6TZU2_MAIZE); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398 NbS00000849g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|181; (*GB) gi|225433416|ref|XP_002283185.1| (e_value=3e-77) PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LRM7|NCED6_ARATH (e_value=4e-73) 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1;; (*TAIR) AT3G24220.1 (e_value=3e-74) | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577;; (*ITAG) Solyc05g053530.1.1 (e_value=2e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62757011-62758762 transcript_region:SL2.40ch05:62757011..62758762- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase 6"; GO:0045549 NbS00000849g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|176; (*GB) gi|317016344|gb|ADU85829.1| (e_value=4e-63) 9-cis-epoxycarotenoid dioxygenase [Fragaria x ananassa];; (*SWP) sp|Q9LRM7|NCED6_ARATH (e_value=4e-63) 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1;; (*TAIR) AT3G24220.1 (e_value=3e-64) | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577;; (*ITAG) Solyc05g053530.1.1 (e_value=3e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62757011-62758762 transcript_region:SL2.40ch05:62757011..62758762- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase 6"; GO:0045549 NbS00006080g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|0|523; (*GB) gi|19885|emb|CAA47324.1| (e_value=0.0) monosaccharid transporter [Nicotiana tabacum];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00006080g0015.1 protein AED:0.15 eAED:0.17 QI:0|0.85|0.75|1|0.71|0.75|8|179|284; (*GB) gi|224116236|ref|XP_002317246.1| (e_value=6e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYN2|VAP42_ARATH (e_value=6e-123) Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1;; (*TAIR) AT4G21450.1 (e_value=5e-124) | Symbols: | PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295;; (*ITAG) Solyc02g079230.2.1 (e_value=2e-151) genomic_reference:SL2.40ch02 gene_region:38419981-38424111 transcript_region:SL2.40ch02:38419981..38424111- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR000535 Major sperm protein "; GO:0005198 NbS00006080g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|224093388|ref|XP_002309907.1| (e_value=5e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g054700.2.1 (e_value=4e-13) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00017205g0004.1 protein AED:0.22 eAED:0.22 QI:217|0.5|0.33|1|0.5|0.33|3|0|380; (*GB) gi|82697969|gb|ABB89019.1| (e_value=1e-178) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q8LED9|CXE16_ARATH (e_value=4e-169) Probable carboxylesterase 16 OS=Arabidopsis thaliana GN=CXE16 PE=2 SV=1;; (*TAIR) AT3G27320.2 (e_value=3e-178) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:10090307-10092391 FORWARD LENGTH=428;; (*ITAG) Solyc05g014320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8154699-8157508 transcript_region:SL2.40ch05:8154699..8157508- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00023993g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.69|0.5|0.85|0.69|0.85|14|0|584; (*GB) gi|255553667|ref|XP_002517874.1| (e_value=0.0) phospholipid-transporting atpase, putative [Ricinus communis];; (*SWP) sp|P98205|ALA2_ARATH (e_value=0.0) Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1;; (*TAIR) AT5G44240.2 (e_value=0.0) | Symbols: ALA2 | aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107;; (*ITAG) Solyc11g017170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7954305-7991478 transcript_region:SL2.40ch11:7954305..7991478+ go_terms:GO:0005576,GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium transporting ATPase (AHRD V1 ***- A8N6A2_COPC7); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0005576,GO:0016020,GO:0008152,GO:0016021 NbS00023993g0012.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|0|0.5|2|0|62 NbS00000378g0004.1 protein AED:0.15 eAED:0.15 QI:788|1|0.33|1|0.5|0.66|3|0|324; (*GB) gi|225448099|ref|XP_002276733.1| (e_value=3e-88) PREDICTED: uncharacterized protein LOC100266910 [Vitis vinifera];; (*TAIR) AT1G68140.3 (e_value=3e-64) | Symbols: | Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=334;; (*ITAG) Solyc01g104500.2.1 (e_value=7e-92) genomic_reference:SL2.40ch01 gene_region:84727020-84728414 transcript_region:SL2.40ch01:84727020..84728414- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00030532g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.44|1|0.5|0.44|9|162|580; (*GB) gi|225455900|ref|XP_002275943.1| (e_value=2e-156) PREDICTED: aspartic proteinase Asp1-like [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=2e-45) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G49050.1 (e_value=7e-127) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:18150638-18153186 FORWARD LENGTH=583;; (*ITAG) Solyc06g069190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39347730-39352677 transcript_region:SL2.40ch06:39347730..39352677- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00023854g0007.1 protein AED:0.24 eAED:0.28 QI:0|0.5|0|1|1|1|3|0|280; (*GB) gi|224136926|ref|XP_002326979.1| (e_value=1e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6CBX2|RMT2_YARLI (e_value=1e-37) Arginine N-methyltransferase 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RMT2 PE=3 SV=1;; (*TAIR) AT5G65860.2 (e_value=2e-147) | Symbols: | ankyrin repeat family protein | chr5:26347706-26348686 REVERSE LENGTH=326;; (*ITAG) Solyc04g078120.2.1 (e_value=2e-176) genomic_reference:SL2.40ch04 gene_region:60543716-60546994 transcript_region:SL2.40ch04:60543716..60546994- go_terms:GO:0005515,GO:0019702 functional_description:"Arginine N-methyltransferase 2 (AHRD V1 **** B6UHM3_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0019702 NbS00023854g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|1|1|1|4|0|637; (*GB) gi|350537151|ref|NP_001234282.1| (e_value=0.0) SBT1 protein precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc04g078110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60540247-60542547 transcript_region:SL2.40ch04:60540247..60542547+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00006092g0018.1 protein AED:0.34 eAED:0.34 QI:86|1|1|1|0|0|5|2|69; (*GB) gi|359491178|ref|XP_002276097.2| (e_value=8e-28) PREDICTED: uncharacterized protein LOC100253596 [Vitis vinifera];; (*TAIR) AT1G78790.1 (e_value=1e-26) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:29623930-29624785 REVERSE LENGTH=104;; (*ITAG) Solyc03g111790.2.1 (e_value=5e-41) genomic_reference:SL2.40ch03 gene_region:56473308-56475421 transcript_region:SL2.40ch03:56473308..56475421+ functional_description:"Centromere protein X (AHRD V1 *-*- CENPX_BOVIN); contains Interpro domain(s) IPR018552 Protein of unknown function DUF2008 "; NbS00006092g0014.1 protein AED:0.43 eAED:0.43 QI:0|0.66|0.5|1|0.66|0.5|4|0|222; (*GB) gi|225456838|ref|XP_002278792.1| (e_value=2e-89) PREDICTED: protein-L-isoaspartate O-methyltransferase [Vitis vinifera];; (*SWP) sp|Q42539|PIMT_ARATH (e_value=8e-84) Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3;; (*TAIR) AT3G48330.2 (e_value=6e-85) | Symbols: PIMT1 | protein-l-isoaspartate methyltransferase 1 | chr3:17892969-17893975 REVERSE LENGTH=230;; (*ITAG) Solyc03g111830.2.1 (e_value=5e-105) genomic_reference:SL2.40ch03 gene_region:56497562-56502317 transcript_region:SL2.40ch03:56497562..56502317+ go_terms:GO:0004719,GO:0042802 functional_description:"Protein-L-isoaspartate O-methyltransferase (AHRD V1 **** B9I3I9_POPTR); contains Interpro domain(s) IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase "; GO:0004719,GO:0042802 NbS00006092g0012.1 protein AED:0.34 eAED:0.67 QI:0|0|0.5|1|1|1|2|0|87; (*GB) gi|255546311|ref|XP_002514215.1| (e_value=9e-39) ceramide glucosyltransferase, putative [Ricinus communis];; (*TAIR) AT2G19880.1 (e_value=3e-30) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:8581578-8585118 FORWARD LENGTH=519;; (*ITAG) Solyc12g008490.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1892113-1901586 transcript_region:SL2.40ch12:1892113..1901586- functional_description:"Ceramide glucosyltransferase (AHRD V1 ***- Q946Y1_GOSAR)"; NbS00006092g0015.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0.5|0.66|3|0|480; (*GB) gi|24421095|dbj|BAC07504.2| (e_value=1e-164) receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=1e-150) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=1e-151) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc06g071810.1.1 (e_value=5e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40623953-40625830 transcript_region:SL2.40ch06:40623953..40625830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006092g0016.1 protein AED:0.33 eAED:0.34 QI:0|0.66|0.75|1|0.66|0.75|4|49|290; (*GB) gi|133246|sp|P19682.1|ROC3_NICSY (e_value=7e-158) RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP; Flags: Precursor;; (*SWP) sp|P19682|ROC3_NICSY (e_value=2e-159) 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G24770.1 (e_value=8e-89) | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA binding protein | chr4:12766223-12767952 REVERSE LENGTH=329;; (*ITAG) Solyc03g111840.2.1 (e_value=4e-133) genomic_reference:SL2.40ch03 gene_region:56501989-56506255 transcript_region:SL2.40ch03:56501989..56506255- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 **-- PAP1L_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00017507g0007.1 protein AED:0.33 eAED:0.33 QI:250|1|1|1|0.66|0.85|7|421|206; (*GB) gi|152206078|gb|ABS30424.1| (e_value=5e-128) cyclophilin-like protein [Nicotiana tabacum];; (*SWP) sp|Q8LDP4|CP19D_ARATH (e_value=5e-109) Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2;; (*TAIR) AT2G29960.1 (e_value=3e-110) | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201;; (*ITAG) Solyc06g076970.2.1 (e_value=1e-127) genomic_reference:SL2.40ch06 gene_region:44223388-44227200 transcript_region:SL2.40ch06:44223388..44227200- go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** B2BF99_TOBAC); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00017507g0008.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|6|0|482; (*GB) gi|356569533|ref|XP_003552954.1| (e_value=0.0) PREDICTED: O-glucosyltransferase rumi-like [Glycine max];; (*SWP) sp|B0X1Q4|RUMI_CULQU (e_value=5e-20) O-glucosyltransferase rumi homolog OS=Culex quinquefasciatus GN=CPIJ013394 PE=3 SV=1;; (*TAIR) AT1G07220.1 (e_value=0.0) | Symbols: | Arabidopsis thaliana protein of unknown function (DUF821) | chr1:2217073-2219379 REVERSE LENGTH=507;; (*ITAG) Solyc06g076980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44228341-44230786 transcript_region:SL2.40ch06:44228341..44230786+ functional_description:"Glycosyltransferase CAZy family GT90 (Fragment) (AHRD V1 **-- D8RT95_SELML); contains Interpro domain(s) IPR008539 Protein of unknown function DUF821, CAP10-like "; NbS00006237g0001.1 protein AED:0.58 eAED:0.58 QI:0|0|0.33|0.33|1|1|3|0|72 NbS00004204g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|0|0|3|0|123; (*GB) gi|162532861|gb|ABY16785.1| (e_value=1e-67) auxin-repressed protein [Nicotiana tabacum];; (*SWP) sp|Q05349|12KD_FRAAN (e_value=6e-33) Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1;; (*TAIR) AT1G28330.1 (e_value=1e-38) | Symbols: DRM1, DYL1 | dormancy-associated protein-like 1 | chr1:9934252-9935216 REVERSE LENGTH=122;; (*ITAG) Solyc02g077880.2.1 (e_value=8e-67) genomic_reference:SL2.40ch02 gene_region:37291522-37292600 transcript_region:SL2.40ch02:37291522..37292600+ functional_description:"Auxin-repressed protein (AHRD V1 ***- Q6PXE1_9SOLN); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00004204g0006.1 protein AED:0.24 eAED:0.24 QI:209|0.9|0.90|1|0.6|0.72|11|313|433; (*GB) gi|111183164|gb|ABH07901.1| (e_value=4e-172) putative zinc finger protein [Solanum lycopersicum];; (*SWP) sp|Q9FKW0|RNG1A_ARATH (e_value=5e-80) Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2;; (*TAIR) AT5G44280.1 (e_value=4e-81) | Symbols: ATRING1A, RING1A | RING 1A | chr5:17836115-17839114 REVERSE LENGTH=522;; (*ITAG) Solyc02g077890.2.1 (e_value=9e-175) genomic_reference:SL2.40ch02 gene_region:37294135-37303313 transcript_region:SL2.40ch02:37294135..37303313- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *-*- B0WQV3_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type IPR017907 Zinc finger, RING-type, conserved site "; GO:0008270 NbS00010005g0005.1 protein AED:0.22 eAED:0.22 QI:450|0.6|0.33|1|0.6|0.66|6|0|711; (*GB) gi|225443962|ref|XP_002280109.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein C24H6.13-like [Vitis vinifera];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=6e-23) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT1G30360.1 (e_value=0.0) | Symbols: ERD4 | Early-responsive to dehydration stress protein (ERD4) | chr1:10715892-10718799 FORWARD LENGTH=724;; (*ITAG) Solyc08g023440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16571646-16577518 transcript_region:SL2.40ch08:16571646..16577518- go_terms:GO:0016020 functional_description:"Early-responsive to dehydration 4 (AHRD V1 **-- D7KET4_ARALY); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00033280g0006.1 protein AED:0.38 eAED:0.39 QI:0|0.66|0.69|1|0.75|0.69|13|314|619; (*GB) gi|350537659|ref|NP_001234047.1| (e_value=0.0) COP1 homolog [Solanum lycopersicum];; (*SWP) sp|P43254|COP1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT2G32950.1 (e_value=0.0) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc12g005950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:576268-587430 transcript_region:SL2.40ch12:576268..587430- go_terms:GO:0008270 functional_description:"WD-repeat protein (AHRD V1 *--- B0JNY6_MICAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00005265g0006.1 protein AED:0.05 eAED:0.05 QI:53|0.5|0.33|0.66|0|0.33|3|0|99; (*GB) gi|71041100|gb|AAZ20438.1| (e_value=2e-48) MYB22 [Malus x domestica];; (*SWP) sp|O22264|MYB12_ARATH (e_value=2e-45) Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=1e-48) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc06g009710.2.1 (e_value=6e-47) genomic_reference:SL2.40ch06 gene_region:3687447-3689516 transcript_region:SL2.40ch06:3687447..3689516+ go_terms:GO:0005515,GO:0003700 functional_description:"Myb 12 transcription factor (AHRD V1 *-** D2EBC3_9SOLN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00005265g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|0.5|2|0|156 NbS00052695g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|388492688|gb|AFK34410.1| (e_value=1e-42) unknown [Lotus japonicus];; (*SWP) sp|P24007|RBS_PYRPY (e_value=4e-36) Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1;; (*TAIR) AT1G67090.1 (e_value=7e-36) | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180;; (*ITAG) Solyc07g017950.2.1 (e_value=8e-50) genomic_reference:SL2.40ch07 gene_region:8636547-8638555 transcript_region:SL2.40ch07:8636547..8638555+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- C6T529_SOYBN); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00039523g0003.1 protein AED:0.34 eAED:0.51 QI:0|0|0|0.8|0.25|0.4|5|0|347; (*ITAG) Solyc06g005660.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:724698-728116 transcript_region:SL2.40ch06:724698..728116- functional_description:"Unknown Protein (AHRD V1)"; NbS00039523g0002.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0|3|0|107; (*ITAG) Solyc06g005660.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:724698-728116 transcript_region:SL2.40ch06:724698..728116- functional_description:"Unknown Protein (AHRD V1)"; NbS00002042g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0|0.6|1|1|5|0|276; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=9e-132) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=3e-133) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=2e-127) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=3e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00024156g0009.1 protein AED:0.18 eAED:0.18 QI:475|1|1|1|0.77|0.7|10|409|267; (*GB) gi|363814384|ref|NP_001242831.1| (e_value=9e-130) uncharacterized protein LOC100817391 [Glycine max];; (*SWP) sp|Q8CGF5|TMM56_MOUSE (e_value=7e-23) Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1;; (*TAIR) AT4G19645.2 (e_value=1e-116) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr4:10689941-10691298 REVERSE LENGTH=268;; (*ITAG) Solyc07g044990.2.1 (e_value=4e-158) genomic_reference:SL2.40ch07 gene_region:55376713-55380562 transcript_region:SL2.40ch07:55376713..55380562+ go_terms:GO:0016021 functional_description:"Transmembrane protein 56 (AHRD V1 ***- B6TI82_MAIZE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00024156g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.6|1|1|1|5|0|646; (*GB) gi|350538711|ref|NP_001233844.1| (e_value=0.0) NIM1-like protein 2 [Solanum lycopersicum];; (*SWP) sp|Q8L746|NPR3_ARATH (e_value=1e-176) Regulatory protein NPR3 OS=Arabidopsis thaliana GN=NPR3 PE=1 SV=1;; (*TAIR) AT5G45110.1 (e_value=1e-177) | Symbols: NPR3, ATNPR3 | NPR1-like protein 3 | chr5:18229319-18231334 FORWARD LENGTH=586;; (*ITAG) Solyc07g044980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55346685-55351408 transcript_region:SL2.40ch07:55346685..55351408- go_terms:GO:0005515 functional_description:"NPR1-1 protein (Fragment) (AHRD V1 ***- B8XQT4_SOYBN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00024156g0013.1 protein AED:0.15 eAED:0.62 QI:26|0.5|0|1|0|0|3|0|90 NbS00022834g0001.1 protein AED:0.01 eAED:0.01 QI:294|1|1|1|0.75|0.6|5|9|286; (*GB) gi|225460696|ref|XP_002270347.1| (e_value=4e-120) PREDICTED: uncharacterized protein LOC100243534 [Vitis vinifera];; (*SWP) sp|O78458|YCF37_GUITH (e_value=6e-21) Uncharacterized protein ycf37 OS=Guillardia theta GN=ycf37 PE=3 SV=1;; (*TAIR) AT1G22700.2 (e_value=5e-107) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8028323-8029878 REVERSE LENGTH=296;; (*ITAG) Solyc11g017200.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8016371-8020103 transcript_region:SL2.40ch11:8016371..8020103- go_terms:GO:0005488 functional_description:"TPR repeat (AHRD V1 *--- Q31NR5_SYNE7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021625g0003.1 protein AED:0.40 eAED:0.40 QI:122|0.5|0.66|1|0.5|0.66|3|0|123; (*GB) gi|147789259|emb|CAN71152.1| (e_value=3e-23) hypothetical protein VITISV_020968 [Vitis vinifera];; (*ITAG) Solyc12g013550.1.1 (e_value=2e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:4397934-4402691 transcript_region:SL2.40ch12:4397934..4402691+ functional_description:"Unknown Protein (AHRD V1)"; NbC26024773g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|359495595|ref|XP_002265382.2| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100259312 [Vitis vinifera];; (*TAIR) AT3G25130.1 (e_value=9e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc06g083330.2.1 (e_value=7e-36) genomic_reference:SL2.40ch06 gene_region:45066449-45067576 transcript_region:SL2.40ch06:45066449..45067576- functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 ***- Q9LSG4_ARATH)"; NbS00023211g0007.1 protein AED:0.26 eAED:0.27 QI:868|0.5|0.4|1|0.5|0.2|5|0|335; (*GB) gi|351713115|gb|EHB16034.1| (e_value=2e-169) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|Q9ZRA8|TBB5_WHEAT (e_value=8e-153) Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1;; (*TAIR) AT5G12250.1 (e_value=9e-152) | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449;; (*ITAG) Solyc10g080940.1.1 (e_value=7e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61453818-61456401 transcript_region:SL2.40ch10:61453818..61456401- go_terms:GO:0005874,GO:0043234,GO:0016021 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HNJ2_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234,GO:0016021 NbS00044696g0005.1 protein AED:0.07 eAED:0.07 QI:34|1|1|1|0.66|0.57|7|221|353; (*GB) gi|225424734|ref|XP_002266639.1| (e_value=1e-106) PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-33) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G28050.1 (e_value=8e-72) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367;; (*ITAG) Solyc05g005830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:653711-656736 transcript_region:SL2.40ch05:653711..656736+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FL09_ARATH)"; NbS00004893g0005.1 protein AED:0.22 eAED:0.22 QI:159|0.5|0.4|0.6|0.25|0.4|5|0|104; (*GB) gi|225439868|ref|XP_002278566.1| (e_value=5e-35) PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LFG2|DAPF_ARATH (e_value=1e-32) Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1;; (*TAIR) AT3G53580.1 (e_value=1e-33) | Symbols: | diaminopimelate epimerase family protein | chr3:19864784-19866907 FORWARD LENGTH=362;; (*ITAG) Solyc09g005700.2.1 (e_value=3e-42) genomic_reference:SL2.40ch09 gene_region:488084-495891 transcript_region:SL2.40ch09:488084..495891- go_terms:GO:0008837 functional_description:"Diaminopimelate epimerase family protein (AHRD V1 **** D7LUJ8_ARALY); contains Interpro domain(s) IPR001653 Diaminopimelate epimerase "; GO:0008837 NbS00043340g0005.1 protein AED:0.26 eAED:0.26 QI:189|0.57|0.62|1|0.14|0.37|8|225|371; (*GB) gi|350536613|ref|NP_001234511.1| (e_value=0.0) plastid quinol oxidase [Solanum lycopersicum];; (*SWP) sp|Q56X52|AOX4_ARATH (e_value=3e-122) Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2;; (*TAIR) AT4G22260.1 (e_value=2e-123) | Symbols: IM, IM1 | Alternative oxidase family protein | chr4:11769967-11772350 REVERSE LENGTH=351;; (*ITAG) Solyc11g011990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4937989-4942674 transcript_region:SL2.40ch11:4937989..4942674- go_terms:GO:0009916 functional_description:"Plastid terminal oxydase"; GO:0009916 NbS00041800g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|151; (*GB) gi|6996562|emb|CAB75430.1| (e_value=7e-77) putative 16kDa membrane protein [Nicotiana tabacum];; (*TAIR) AT1G08380.1 (e_value=8e-69) | Symbols: PSAO | photosystem I subunit O | chr1:2641004-2641739 REVERSE LENGTH=140;; (*ITAG) Solyc06g074200.2.1 (e_value=2e-77) genomic_reference:SL2.40ch06 gene_region:42266515-42267823 transcript_region:SL2.40ch06:42266515..42267823- functional_description:"Sex-linked protein 9 (Fragment) (AHRD V1 ***- D7RW11_SILCU); contains Interpro domain(s) IPR017498 Photosystem I PsaO "; NbS00041800g0013.1 protein AED:0.36 eAED:0.36 QI:178|0.85|0.62|1|0.57|0.62|8|0|359; (*GB) gi|77745454|gb|ABB02626.1| (e_value=3e-157) unknown [Solanum tuberosum];; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=1e-102) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2;; (*TAIR) AT1G08370.1 (e_value=1e-103) | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367;; (*ITAG) Solyc06g074210.2.1 (e_value=2e-157) genomic_reference:SL2.40ch06 gene_region:42268413-42276417 transcript_region:SL2.40ch06:42268413..42276417- functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; NbS00014872g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|497; (*GB) gi|225441571|ref|XP_002276694.1| (e_value=2e-152) PREDICTED: uncharacterized protein LOC100246957 [Vitis vinifera];; (*TAIR) AT3G11950.2 (e_value=3e-145) | Symbols: | TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572;; (*ITAG) Solyc04g009600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2991227-2993911 transcript_region:SL2.40ch04:2991227..2993911+ go_terms:GO:0008270 functional_description:"TRAF-type zinc finger family protein (AHRD V1 *--- Q2QWV7_ORYSJ); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00014872g0011.1 protein AED:0.39 eAED:0.47 QI:0|0.8|0.83|1|1|1|6|0|180; (*GB) gi|255568159|ref|XP_002525055.1| (e_value=9e-77) cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Ricinus communis];; (*SWP) sp|Q2NTS8|PGSA_SODGM (e_value=5e-30) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Sodalis glossinidius (strain morsitans) GN=pgsA PE=3 SV=1;; (*TAIR) AT2G39290.1 (e_value=6e-79) | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate synthase 1 | chr2:16407274-16408840 FORWARD LENGTH=296;; (*ITAG) Solyc04g009580.2.1 (e_value=5e-88) genomic_reference:SL2.40ch04 gene_region:2975791-2980078 transcript_region:SL2.40ch04:2975791..2980078+ go_terms:GO:0008444 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-** PGSA_SODGM); contains Interpro domain(s) IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase "; GO:0008444 NbS00040596g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|0.66|0.75|4|0|173; (*GB) gi|297737585|emb|CBI26786.3| (e_value=3e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q08654|TRPG_THEMA (e_value=4e-29) Anthranilate synthase component II OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=trpGD PE=3 SV=2;; (*TAIR) AT1G25220.1 (e_value=9e-62) | Symbols: ASB1, TRP4, WEI7 | anthranilate synthase beta subunit 1 | chr1:8837430-8839478 REVERSE LENGTH=276;; (*ITAG) Solyc12g010180.1.1 (e_value=4e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3296799-3307363 transcript_region:SL2.40ch12:3296799..3307363- go_terms:GO:0008152,GO:0006541,GO:0009058,GO:0003824 functional_description:"Anthranilate synthase (AHRD V1 ***- A1KAT4_AZOSB); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0008152,GO:0006541,GO:0009058,GO:0003824 NbS00018019g0003.1 protein AED:0.22 eAED:0.22 QI:379|1|0.66|1|0.5|0.66|3|0|606; (*GB) gi|116829914|gb|ABK27928.1| (e_value=0.0) coronatine-insensitive 1 [Nicotiana attenuata];; (*SWP) sp|O04197|COI1_ARATH (e_value=0.0) Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1;; (*TAIR) AT2G39940.1 (e_value=0.0) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592;; (*ITAG) Solyc05g052620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61968471-61974545 transcript_region:SL2.40ch05:61968471..61974545- go_terms:GO:0005515,GO:0004842 functional_description:"Coronatine-insensitive 1 (Fragment) (AHRD V1 *--- Q5VJQ1_TOBAC)"; GO:0005515,GO:0004842 NbS00039541g0002.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|408; (*GB) gi|356540297|ref|XP_003538626.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100792492 [Glycine max];; (*TAIR) AT4G39840.1 (e_value=5e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18485268-18486623 FORWARD LENGTH=451;; (*ITAG) Solyc04g055090.1.1 (e_value=2e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:52817176-52818426 transcript_region:SL2.40ch04:52817176..52818426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019361g0011.1 protein AED:0.15 eAED:0.15 QI:110|1|1|1|0.66|0.5|4|850|112; (*GB) gi|77416939|gb|ABA81865.1| (e_value=1e-29) unknown [Solanum tuberosum];; (*SWP) sp|P41099|RLA2_PARAR (e_value=3e-26) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=5e-24) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc06g074430.2.1 (e_value=2e-32) genomic_reference:SL2.40ch06 gene_region:42457712-42460408 transcript_region:SL2.40ch06:42457712..42460408+ go_terms:GO:0003735 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0003735 NbS00019361g0016.1 protein AED:0.10 eAED:0.10 QI:556|1|1|1|0.57|0.37|8|188|369; (*GB) gi|359489402|ref|XP_002272931.2| (e_value=3e-119) PREDICTED: peroxisome biogenesis protein 16-like [Vitis vinifera];; (*SWP) sp|Q8S8S1|PEX16_ARATH (e_value=7e-99) Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1;; (*TAIR) AT2G45690.1 (e_value=6e-100) | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367;; (*ITAG) Solyc06g074460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42465763-42469550 transcript_region:SL2.40ch06:42465763..42469550- functional_description:"Peroxisomal membrane protein PEX16 (AHRD V1 ***- C5FRH5_NANOT); contains Interpro domain(s) IPR013919 Peroxisome membrane protein, Pex16 "; NbS00019361g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|106 NbS00019361g0002.1 protein AED:0.27 eAED:0.27 QI:601|0.66|1|1|0.66|0.5|4|57|219 NbS00002272g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|132; (*ITAG) Solyc11g068410.1.1 (e_value=8e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00002272g0002.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|3|0|506; (*GB) gi|323149965|gb|ADX33332.1| (e_value=0.0) cinnamate-4-hydroxylase 1 [Petunia x hybrida];; (*SWP) sp|Q42797|TCMO_SOYBN (e_value=0.0) Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=0.0) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00002272g0007.1 protein AED:0.02 eAED:0.02 QI:109|1|1|1|1|1|2|379|246; (*GB) gi|114208|sp|P25317.1|GSTXA_TOBAC (e_value=1e-151) RecName: Full=Probable glutathione S-transferase parA; AltName: Full=Auxin-regulated protein parA; AltName: Full=STR246C protein;; (*SWP) sp|P25317|GSTXA_TOBAC (e_value=3e-153) Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1;; (*TAIR) AT1G17180.1 (e_value=2e-104) | Symbols: ATGSTU25, GSTU25 | glutathione S-transferase TAU 25 | chr1:5872208-5872958 FORWARD LENGTH=221;; (*ITAG) Solyc07g056510.2.1 (e_value=1e-113) genomic_reference:SL2.40ch07 gene_region:61632385-61633876 transcript_region:SL2.40ch07:61632385..61633876- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** D3Y4H6_9ROSI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00002272g0111.1 protein AED:0.06 eAED:0.06 QI:321|0.25|0.2|0.8|0.5|0.6|5|0|694 NbS00002272g0112.1 protein AED:0.22 eAED:0.22 QI:139|0.75|0.8|1|0|0.2|5|1314|157 NbS00002272g0101.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|250 NbS00046273g0009.1 protein AED:0.17 eAED:0.26 QI:82|0|0.33|1|0|0|3|0|554; (*GB) gi|359474075|ref|XP_002279230.2| (e_value=0.0) PREDICTED: homeobox protein BEL1 homolog [Vitis vinifera];; (*SWP) sp|Q38897|BEL1_ARATH (e_value=2e-56) Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2;; (*TAIR) AT5G41410.1 (e_value=2e-57) | Symbols: BEL1 | POX (plant homeobox) family protein | chr5:16580424-16583770 FORWARD LENGTH=611;; (*ITAG) Solyc08g081400.2.1 (e_value=1e-178) genomic_reference:SL2.40ch08 gene_region:61634552-61638185 transcript_region:SL2.40ch08:61634552..61638185+ go_terms:GO:0005515,GO:0003677 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 *--- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005515,GO:0003677 NbS00019311g0003.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|162; (*GB) gi|224108071|ref|XP_002314710.1| (e_value=4e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=2e-29) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=2e-38) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g075810.2.1 (e_value=1e-40) genomic_reference:SL2.40ch09 gene_region:62927206-62929236 transcript_region:SL2.40ch09:62927206..62929236- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00019311g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.66|1|1|1|9|0|502; (*GB) gi|297738774|emb|CBI28019.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G44970.1 (e_value=7e-163) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18548999-18552019 REVERSE LENGTH=503;; (*ITAG) Solyc05g018210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20210742-20216936 transcript_region:SL2.40ch05:20210742..20216936- functional_description:"Os11g0109966 protein (Fragment) (AHRD V1 *-*- C7J8E6_ORYSJ)"; NbS00020677g0005.1 protein AED:0.16 eAED:0.17 QI:5|0.6|0.33|1|0.4|0.33|6|303|493; (*GB) gi|255567947|ref|XP_002524951.1| (e_value=1e-60) Protein FRIGIDA, putative [Ricinus communis];; (*TAIR) AT5G48385.1 (e_value=9e-30) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc04g008840.2.1 (e_value=9e-174) genomic_reference:SL2.40ch04 gene_region:2458319-2461577 transcript_region:SL2.40ch04:2458319..2461577- functional_description:"ABI3-interacting protein 2 (Fragment) (AHRD V1 *-*- A7Y4K9_PINSY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00031433g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|831; (*GB) gi|255559575|ref|XP_002520807.1| (e_value=0.0) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=1e-151) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=9e-153) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g050690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29951249-29954201 transcript_region:SL2.40ch06:29951249..29954201- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00060166g0001.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|3|0|376; (*GB) gi|225432760|ref|XP_002279192.1| (e_value=3e-131) PREDICTED: leucine-rich repeat extensin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9LUI1|LRX6_ARATH (e_value=1e-122) Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1;; (*TAIR) AT3G22800.1 (e_value=8e-124) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:8063063-8064475 REVERSE LENGTH=470;; (*ITAG) Solyc09g082530.1.1 (e_value=5e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63645808-63646989 transcript_region:SL2.40ch09:63645808..63646989- go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00040013g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.82|0.83|1|1|1|18|251|894; (*GB) gi|297746262|emb|CBI16318.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SE43|REV_ARATH (e_value=0.0) Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2;; (*TAIR) AT5G60690.1 (e_value=0.0) | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr5:24397734-24401933 FORWARD LENGTH=842;; (*ITAG) Solyc11g069470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51150759-51156271 transcript_region:SL2.40ch11:51150759..51156271+ go_terms:GO:0006355,GO:0045449 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0006355,GO:0045449 NbS00040013g0010.1 protein AED:0.39 eAED:0.39 QI:0|1|0.66|1|0.5|1|3|0|178; (*GB) gi|297746263|emb|CBI16319.3| (e_value=5e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SKN3|CSPL6_ARATH (e_value=2e-87) CASP-like protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1;; (*TAIR) AT2G28370.1 (e_value=1e-88) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:12132092-12133447 FORWARD LENGTH=179;; (*ITAG) Solyc11g069480.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51157067-51160290 transcript_region:SL2.40ch11:51157067..51160290- functional_description:"UPF0497 membrane protein At2g28370 (AHRD V1 ***- U4977_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00031999g0004.1 protein AED:0.84 eAED:0.85 QI:0|0|0|0.2|1|1|5|0|76 NbS00030250g0007.1 protein AED:0.13 eAED:0.15 QI:18|0.72|0.5|1|0.72|0.58|12|126|1338; (*GB) gi|297743871|emb|CBI36841.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZJ5|AB14C_ARATH (e_value=0.0) ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1;; (*TAIR) AT3G62700.1 (e_value=0.0) | Symbols: ATMRP10, MRP10, ABCC14 | multidrug resistance-associated protein 10 | chr3:23190428-23195727 REVERSE LENGTH=1539;; (*ITAG) Solyc01g080640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72398456-72405075 transcript_region:SL2.40ch01:72398456..72405075+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GS96_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00005693g0110.1 protein AED:0.10 eAED:0.11 QI:277|0.85|0.87|1|1|1|8|0|304 NbS00005693g0111.1 protein AED:0.16 eAED:0.18 QI:0|1|0.57|1|1|1|7|0|473 NbS00005693g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|176 NbS00000420g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|147833683|emb|CAN62089.1| (e_value=4e-68) hypothetical protein VITISV_030649 [Vitis vinifera];; (*TAIR) AT1G27100.1 (e_value=1e-56) | Symbols: | Actin cross-linking protein | chr1:9407557-9411074 REVERSE LENGTH=519;; (*ITAG) Solyc05g006780.2.1 (e_value=3e-79) genomic_reference:SL2.40ch05 gene_region:1400482-1407165 transcript_region:SL2.40ch05:1400482..1407165+ functional_description:"NPH3 domain containing protein-like (AHRD V1 *-*- Q8GVF8_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00000420g0011.1 protein AED:0.22 eAED:0.30 QI:0|0|0|1|0|0.66|3|0|276; (*GB) gi|224100431|ref|XP_002311873.1| (e_value=2e-77) predicted protein [Populus trichocarpa];; (*TAIR) AT3G28630.2 (e_value=4e-69) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=321;; (*ITAG) Solyc01g010430.2.1 (e_value=5e-97) genomic_reference:SL2.40ch01 gene_region:5338904-5342294 transcript_region:SL2.40ch01:5338904..5342294+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 **-- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00000420g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.75|1|1|1|4|509|413; (*GB) gi|15223426|ref|NP_174029.1| (e_value=3e-82) uncharacterized glycine-rich protein [Arabidopsis thaliana];; (*TAIR) AT1G27090.1 (e_value=6e-85) | Symbols: | glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420;; (*ITAG) Solyc01g010440.2.1 (e_value=2e-157) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00000420g0108.1 protein AED:0.16 eAED:0.16 QI:477|1|1|1|0.57|0.75|8|446|534 NbS00000420g0105.1 protein AED:0.25 eAED:0.25 QI:0|1|0.71|1|0.5|0.71|7|1197|372 NbS00015744g0009.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0.33|0.88|0.75|0.77|9|0|1086; (*GB) gi|225451330|ref|XP_002274474.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D1-like [Vitis vinifera];; (*SWP) sp|O49323|CSLD1_ARATH (e_value=0.0) Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1;; (*TAIR) AT2G33100.1 (e_value=0.0) | Symbols: ATCSLD1, CSLD1 | cellulose synthase-like D1 | chr2:14036494-14040044 REVERSE LENGTH=1036;; (*ITAG) Solyc05g053560.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62789377-62793324 transcript_region:SL2.40ch05:62789377..62793324- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00015744g0008.1 protein AED:0.14 eAED:0.14 QI:156|1|1|1|1|1|17|318|805; (*GB) gi|225433588|ref|XP_002269672.1| (e_value=0.0) PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q9ZTS1|SYM_ORYSJ (e_value=0.0) Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2;; (*TAIR) AT4G13780.1 (e_value=0.0) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00055591g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0.5|2|133|83; (*GB) gi|388502560|gb|AFK39346.1| (e_value=4e-24) unknown [Medicago truncatula];; (*TAIR) AT1G10410.1 (e_value=1e-23) | Symbols: | Protein of unknown function (DUF1336) | chr1:3416842-3419264 REVERSE LENGTH=485;; (*ITAG) Solyc04g005860.2.1 (e_value=2e-27) genomic_reference:SL2.40ch04 gene_region:546882-552341 transcript_region:SL2.40ch04:546882..552341- functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00000205g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|557; (*GB) gi|356540081|ref|XP_003538519.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Glycine max];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=0.0) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc11g008860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3041039-3043027 transcript_region:SL2.40ch11:3041039..3043027+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00000205g0008.1 protein AED:0.14 eAED:0.16 QI:0|1|0.75|1|1|1|8|0|593; (*GB) gi|359495826|ref|XP_002265825.2| (e_value=0.0) PREDICTED: protease Do-like 10, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIV6|DGP10_ARATH (e_value=0.0) Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1;; (*TAIR) AT5G36950.1 (e_value=0.0) | Symbols: DegP10 | DegP protease 10 | chr5:14594992-14598216 FORWARD LENGTH=586;; (*ITAG) Solyc11g008850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3033380-3040040 transcript_region:SL2.40ch11:3033380..3040040+ go_terms:GO:0008236 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0008236 NbS00000205g0012.1 protein AED:0.10 eAED:0.18 QI:43|0|0|1|0|0|2|0|275; (*GB) gi|147828500|emb|CAN77579.1| (e_value=3e-42) hypothetical protein VITISV_015345 [Vitis vinifera];; (*ITAG) Solyc11g008840.1.1 (e_value=5e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3029621-3032194 transcript_region:SL2.40ch11:3029621..3032194- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00003809g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|1|0.8|0.33|6|0|423; (*GB) gi|255566602|ref|XP_002524285.1| (e_value=0.0) phosphoric diester hydrolase, putative [Ricinus communis];; (*SWP) sp|Q2QXB2|TLP14_ORYSJ (e_value=4e-163) Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1;; (*TAIR) AT1G76900.2 (e_value=2e-163) | Symbols: AtTLP1, TLP1 | tubby like protein 1 | chr1:28882741-28884377 FORWARD LENGTH=455;; (*ITAG) Solyc04g071440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56014601-56018182 transcript_region:SL2.40ch04:56014601..56018182+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 8 (AHRD V1 ***- TLP8_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00011940g0003.1 protein AED:0.03 eAED:0.08 QI:0|1|0.66|1|0.5|0.33|3|104|286; (*GB) gi|297746160|emb|CBI16216.3| (e_value=8e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G59990.1 (e_value=5e-36) | Symbols: | CCT motif family protein | chr5:24151206-24153084 REVERSE LENGTH=241;; (*ITAG) Solyc11g072850.1.1 (e_value=1e-96) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:53121792-53123684 transcript_region:SL2.40ch11:53121792..53123684+ functional_description:"Zinc finger protein CONSTANS-LIKE 2 (AHRD V1 *--- B9MSS7_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; NbS00044448g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.88|1|1|1|9|272|346; (*GB) gi|225454007|ref|XP_002280748.1| (e_value=1e-176) PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera];; (*SWP) sp|Q8GXF0|RA51C_ARATH (e_value=2e-158) DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2;; (*TAIR) AT2G45280.1 (e_value=2e-159) | Symbols: ATRAD51C, RAD51C | RAS associated with diabetes protein 51C | chr2:18670103-18672041 FORWARD LENGTH=363;; (*ITAG) Solyc05g050960.2.1 (e_value=3e-134) genomic_reference:SL2.40ch05 gene_region:60323768-60325084 transcript_region:SL2.40ch05:60323768..60325084+ go_terms:GO:0006259 functional_description:"DNA repair and recombination protein radA (AHRD V1 ***- D0KRU5_SULS9); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0006259 NbS00044448g0012.1 protein AED:0.24 eAED:0.25 QI:232|0.85|0.87|1|1|1|8|0|762; (*GB) gi|194396261|gb|ACF60500.1| (e_value=0.0) plastid transketolase [Nicotiana tabacum];; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=0.0) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G60750.1 (e_value=0.0) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741;; (*ITAG) Solyc10g018300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7264174-7267205 transcript_region:SL2.40ch10:7264174..7267205- go_terms:GO:0004802,GO:0005515 functional_description:"Transketolase 1 (AHRD V1 **** O78327_CAPAN); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0005515 NbS00044448g0007.1 protein AED:0.26 eAED:0.31 QI:81|0.55|0.4|0.9|0.66|0.7|10|0|373; (*GB) gi|224127350|ref|XP_002320052.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q32LQ3|OSGC2_DANRE (e_value=3e-56) Probable tRNA threonylcarbamoyladenosine biosynthesis protein osgepl1 OS=Danio rerio GN=osgepl1 PE=2 SV=2;; (*TAIR) AT2G45270.1 (e_value=6e-177) | Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480;; (*ITAG) Solyc05g050940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60312326-60319564 transcript_region:SL2.40ch05:60312326..60319564+ go_terms:GO:0005515,GO:0004125 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0005515,GO:0004125 NbS00029278g0010.1 protein AED:0.18 eAED:0.18 QI:301|0.92|0.85|1|0.46|0.64|14|198|646; (*GB) gi|297742620|emb|CBI34769.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q76LS9|FA63A_MOUSE (e_value=2e-34) Protein FAM63A OS=Mus musculus GN=Fam63a PE=1 SV=1;; (*TAIR) AT4G11860.1 (e_value=1e-85) | Symbols: | Protein of unknown function (DUF544) | chr4:7134237-7138361 REVERSE LENGTH=682;; (*ITAG) Solyc08g080110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60615304-60624153 transcript_region:SL2.40ch08:60615304..60624153+ functional_description:"Fam63a protein (AHRD V1 *--- B7ZMR0_MOUSE); contains Interpro domain(s) IPR007518 Protein of unknown function DUF544 "; NbS00029278g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|1|1|1|3|0|147; (*GB) gi|350535332|ref|NP_001233933.1| (e_value=6e-64) homeobox 2 protein [Solanum lycopersicum];; (*SWP) sp|Q9FPQ8|KNAT7_ARATH (e_value=5e-52) Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1;; (*TAIR) AT1G62990.1 (e_value=4e-53) | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of Arabidopsis thaliana 7 | chr1:23337468-23340348 FORWARD LENGTH=291;; (*ITAG) Solyc08g080120.2.1 (e_value=1e-66) genomic_reference:SL2.40ch08 gene_region:60628961-60633541 transcript_region:SL2.40ch08:60628961..60633541+ go_terms:GO:0005515,GO:0003677 functional_description:"Homeobox 2 protein (AHRD V1 ***- Q9ZRB8_SOLLC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515,GO:0003677 NbS00022470g0004.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|1|1|3|0|166; (*GB) gi|225431884|ref|XP_002276038.1| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100241383 [Vitis vinifera];; (*TAIR) AT5G49350.2 (e_value=1e-32) | Symbols: | Glycine-rich protein family | chr5:20009834-20011095 REVERSE LENGTH=225;; (*ITAG) Solyc01g060260.2.1 (e_value=4e-87) genomic_reference:SL2.40ch01 gene_region:62793560-62795045 transcript_region:SL2.40ch01:62793560..62795045+ go_terms:GO:0008083 functional_description:"Unknown Protein (AHRD V1)"; GO:0008083 NbS00005768g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|281; (*GB) gi|326518905|dbj|BAJ92613.1| (e_value=5e-36) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G21150.1 (e_value=9e-28) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc11g022600.1.1 (e_value=2e-82) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:14689832-14690913 transcript_region:SL2.40ch11:14689832..14690913- functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00004786g0003.1 protein AED:0.13 eAED:0.13 QI:36|0.75|0.8|1|1|1|5|0|369; (*GB) gi|359491226|ref|XP_002278355.2| (e_value=8e-161) PREDICTED: uncharacterized protein LOC100246848 [Vitis vinifera];; (*TAIR) AT5G50150.1 (e_value=3e-152) | Symbols: | Protein of Unknown Function (DUF239) | chr5:20402444-20406375 REVERSE LENGTH=420;; (*ITAG) Solyc03g112620.2.1 (e_value=8e-120) genomic_reference:SL2.40ch03 gene_region:57051293-57055116 transcript_region:SL2.40ch03:57051293..57055116- functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B4FXN3_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00004786g0008.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|151; (*ITAG) Solyc06g011460.1.1 (e_value=9e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00004786g0012.1 protein AED:0.02 eAED:0.02 QI:697|1|1|1|1|1|4|157|317; (*GB) gi|224135865|ref|XP_002322180.1| (e_value=8e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GQ69|FAF2B_XENLA (e_value=3e-21) FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=5e-73) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc03g112630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57066301-57068725 transcript_region:SL2.40ch03:57066301..57068725+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 *--- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbS00004786g0018.1 protein AED:0.05 eAED:0.05 QI:242|1|0.5|1|1|0.5|2|0|114; (*GB) gi|255540585|ref|XP_002511357.1| (e_value=1e-50) transcription factor, putative [Ricinus communis];; (*TAIR) AT5G63080.1 (e_value=4e-45) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:25300026-25302321 REVERSE LENGTH=462;; (*ITAG) Solyc03g112600.2.1 (e_value=4e-62) genomic_reference:SL2.40ch03 gene_region:57046297-57050443 transcript_region:SL2.40ch03:57046297..57050443+ go_terms:GO:0003700 functional_description:"JmjC domain-containing protein (AHRD V1 **-- B6K2H3_SCHJY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00004786g0017.1 protein AED:0.23 eAED:0.23 QI:54|1|1|1|0.8|0.83|6|346|248; (*GB) gi|225456953|ref|XP_002278337.1| (e_value=4e-87) PREDICTED: jmjC domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q8BFT6|JMJD4_MOUSE (e_value=2e-21) JmjC domain-containing protein 4 OS=Mus musculus GN=Jmjd4 PE=2 SV=1;; (*TAIR) AT5G63080.1 (e_value=1e-74) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:25300026-25302321 REVERSE LENGTH=462;; (*ITAG) Solyc03g112600.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:57046297-57050443 transcript_region:SL2.40ch03:57046297..57050443+ go_terms:GO:0003700 functional_description:"JmjC domain-containing protein (AHRD V1 **-- B6K2H3_SCHJY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00019984g0011.1 protein AED:0.22 eAED:0.29 QI:0|0.4|0.27|0.72|0.9|0.90|11|0|517; (*GB) gi|224128350|ref|XP_002329140.1| (e_value=3e-102) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15390.1 (e_value=2e-80) | Symbols: SDE5 | silencing defective 5 | chr3:5196689-5199531 REVERSE LENGTH=490;; (*ITAG) Solyc07g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62979495-62988936 transcript_region:SL2.40ch07:62979495..62988936- functional_description:"Genomic DNA chromosome 3 P1 clone MJK13 (AHRD V1 **-- Q9LUQ3_ARATH); contains Interpro domain(s) IPR013899 Region of unknown function DUF1771 "; NbS00019984g0013.1 protein AED:0.01 eAED:0.01 QI:84|1|0.5|1|1|1|2|0|498; (*GB) gi|302143027|emb|CBI20322.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84JR3|PP334_ARATH (e_value=8e-136) Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1;; (*TAIR) AT4G21705.1 (e_value=6e-137) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492;; (*ITAG) Solyc07g063220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62968329-62971690 transcript_region:SL2.40ch07:62968329..62971690+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00019984g0012.1 protein AED:0.12 eAED:0.12 QI:237|1|1|1|0.9|0.90|11|349|700; (*GB) gi|255575304|ref|XP_002528555.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8BY89|CTL2_MOUSE (e_value=5e-54) Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2;; (*TAIR) AT3G15380.1 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700;; (*ITAG) Solyc07g063230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62973618-62979170 transcript_region:SL2.40ch07:62973618..62979170+ functional_description:"Choline transporter like family (AHRD V1 ***- C1E2U6_9CHLO); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00050641g0003.1 protein AED:0.12 eAED:0.12 QI:294|1|1|1|1|1|9|281|360; (*GB) gi|255550690|ref|XP_002516394.1| (e_value=5e-170) spliceosome associated protein, putative [Ricinus communis];; (*SWP) sp|Q6AYL5|SF3B4_RAT (e_value=3e-114) Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1;; (*TAIR) AT2G18510.1 (e_value=2e-155) | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:8031554-8033517 REVERSE LENGTH=363;; (*ITAG) Solyc03g118800.2.1 (e_value=4e-177) genomic_reference:SL2.40ch03 gene_region:61670164-61674250 transcript_region:SL2.40ch03:61670164..61674250+ go_terms:GO:0017091 functional_description:"Polyadenylate-binding protein (AHRD V1 *--* B6K6T8_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0017091 NbS00013651g0008.1 protein AED:0.01 eAED:0.01 QI:155|1|1|1|1|1|3|285|343; (*GB) gi|225457423|ref|XP_002284926.1| (e_value=1e-109) PREDICTED: myb-related protein 306 [Vitis vinifera];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=1e-105) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT3G47600.1 (e_value=7e-92) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333;; (*ITAG) Solyc03g116100.2.1 (e_value=9e-153) genomic_reference:SL2.40ch03 gene_region:59662688-59664351 transcript_region:SL2.40ch03:59662688..59664351- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q6R036_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00013651g0007.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|1|1|2|0|122; (*GB) gi|225457425|ref|XP_002284929.1| (e_value=4e-35) PREDICTED: uncharacterized protein LOC100260374 [Vitis vinifera];; (*TAIR) AT1G74640.1 (e_value=2e-32) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370;; (*ITAG) Solyc03g116110.2.1 (e_value=8e-43) genomic_reference:SL2.40ch03 gene_region:59675160-59679638 transcript_region:SL2.40ch03:59675160..59679638- functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 ***- B2J569_NOSP7)"; NbS00060388g0002.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|5|44; (*GB) gi|75146761|sp|Q84K11.1|PPP5_SOLLC (e_value=7e-23) RecName: Full=Serine/threonine-protein phosphatase 5; AltName: Full=LePP5;; (*SWP) sp|Q84K11|PPP5_SOLLC (e_value=2e-24) Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1;; (*TAIR) AT2G42810.1 (e_value=6e-25) | Symbols: PAPP5, PP5 | protein phosphatase 5.2 | chr2:17812336-17815896 REVERSE LENGTH=484;; (*ITAG) Solyc07g055860.2.1 (e_value=1e-25) genomic_reference:SL2.40ch07 gene_region:61097390-61107260 transcript_region:SL2.40ch07:61097390..61107260- go_terms:GO:0004722,GO:0019904 functional_description:"Serine/threonine-protein phosphatase 5 (AHRD V1 **** B6TKH0_MAIZE); contains Interpro domain(s) IPR011236 Protein phosphatase 5 "; GO:0004722,GO:0019904 NbS00006377g0004.1 protein AED:0.09 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|197; (*GB) gi|51557995|gb|AAU06579.1| (e_value=3e-123) eukaryotic initiation factor iso4E [Nicotiana tabacum];; (*SWP) sp|O81482|IF4E2_MAIZE (e_value=2e-86) Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1;; (*TAIR) AT5G35620.1 (e_value=1e-76) | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2, eIFiso4E | Eukaryotic initiation factor 4E protein | chr5:13824946-13826331 REVERSE LENGTH=198;; (*ITAG) Solyc09g090580.2.1 (e_value=6e-117) genomic_reference:SL2.40ch09 gene_region:65410646-65414029 transcript_region:SL2.40ch09:65410646..65414029- go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E-2 (AHRD V1 ***- B6UD29_MAIZE); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00012344g0005.1 protein AED:0.15 eAED:0.15 QI:194|0.87|0.88|1|1|1|9|543|279; (*GB) gi|18203271|sp|Q9M5P8.1|SNAA_SOLTU (e_value=3e-168) RecName: Full=Alpha-soluble NSF attachment protein; Short=Alpha-SNAP; AltName: Full=N-ethylmaleimide-sensitive factor attachment protein alpha;; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=9e-170) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.1 (e_value=5e-139) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289;; (*ITAG) Solyc06g050770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00012344g0119.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|124 NbS00012344g0112.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|1|1|5|0|444 NbS00012344g0113.1 protein AED:0.30 eAED:0.30 QI:272|0.75|0.6|1|1|1|5|0|431 NbS00012344g0118.1 protein AED:0.37 eAED:0.83 QI:0|0|0|1|0.5|0.66|3|0|131 NbS00012344g0120.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.66|0.66|0.5|0.33|3|0|187 NbS00031561g0011.1 protein AED:0.13 eAED:0.13 QI:165|1|1|1|0.75|0.66|9|269|513; (*GB) gi|359481363|ref|XP_002280929.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265508 [Vitis vinifera];; (*TAIR) AT5G60580.3 (e_value=2e-137) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc09g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1227123-1233091 transcript_region:SL2.40ch09:1227123..1233091- go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 **-- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00031561g0009.1 protein AED:0.21 eAED:0.21 QI:351|0.8|0.81|1|0.9|0.90|11|659|541; (*GB) gi|224138674|ref|XP_002322873.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8TBZ3|WDR20_HUMAN (e_value=7e-55) WD repeat-containing protein 20 OS=Homo sapiens GN=WDR20 PE=1 SV=2;; (*TAIR) AT2G37160.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15609047-15612529 FORWARD LENGTH=544;; (*ITAG) Solyc09g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1218277-1226059 transcript_region:SL2.40ch09:1218277..1226059+ go_terms:GO:0005223 functional_description:"Wd-repeat protein (AHRD V1 **-- B0XIY9_CULQU); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005223 NbS00027176g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|1260; (*GB) gi|114053449|gb|AAT40539.2| (e_value=0.0) Leucine Rich Repeat family protein [Solanum demissum];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=0.0) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc05g007230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1866501-1870352 transcript_region:SL2.40ch05:1866501..1870352- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00048231g0005.1 protein AED:0.34 eAED:0.34 QI:71|1|1|1|0.71|0.75|8|501|322; (*GB) gi|297736325|emb|CBI24963.3| (e_value=3e-160) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LY66|RK1_ARATH (e_value=1e-148) 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1;; (*TAIR) AT3G63490.1 (e_value=1e-149) | Symbols: | Ribosomal protein L1p/L10e family | chr3:23444269-23446020 FORWARD LENGTH=346;; (*ITAG) Solyc01g087730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74419417-74424513 transcript_region:SL2.40ch01:74419417..74424513+ go_terms:GO:0006396,GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L1 (AHRD V1 ***- A8YGI8_MICAE); contains Interpro domain(s) IPR005878 Ribosomal protein L1, bacterial-type "; GO:0006396,GO:0005840,GO:0015934 NbS00006925g0007.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|315|233; (*GB) gi|225426247|ref|XP_002264340.1| (e_value=2e-83) PREDICTED: 30S ribosomal protein S6 alpha, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=2e-80) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1;; (*TAIR) AT1G64510.1 (e_value=1e-81) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954993-23956205 REVERSE LENGTH=207;; (*ITAG) Solyc08g082690.2.1 (e_value=3e-90) genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00006925g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.66|1|0.87|0.77|9|109|457; (*GB) gi|218186540|gb|EEC68967.1| (e_value=0.0) hypothetical protein OsI_37710 [Oryza sativa Indica Group];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=6e-119) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT1G21400.1 (e_value=0.0) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472;; (*ITAG) Solyc04g063350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54581013-54588153 transcript_region:SL2.40ch04:54581013..54588153+ go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbS00013005g0004.1 protein AED:0.21 eAED:0.32 QI:0|0|0|1|1|1|2|0|154; (*GB) gi|356526834|ref|XP_003532021.1| (e_value=7e-15) PREDICTED: RING-H2 finger protein ATL46-like [Glycine max];; (*SWP) sp|Q9LUL6|ATL61_ARATH (e_value=2e-14) Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana GN=ATL61 PE=3 SV=1;; (*TAIR) AT3G14320.1 (e_value=2e-15) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr3:4777731-4778345 REVERSE LENGTH=204;; (*ITAG) Solyc01g088440.2.1 (e_value=6e-53) genomic_reference:SL2.40ch01 gene_region:75005293-75005942 transcript_region:SL2.40ch01:75005293..75005942- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013005g0005.1 protein AED:0.36 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|104; (*GB) gi|356538405|ref|XP_003537694.1| (e_value=9e-31) PREDICTED: RING-H2 finger protein ATL8-like [Glycine max];; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=3e-31) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=2e-32) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc02g082420.2.1 (e_value=4e-36) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013005g0103.1 protein AED:0.33 eAED:0.34 QI:2|1|0.5|1|0|0.5|2|0|194 NbS00013005g0104.1 protein AED:0.24 eAED:0.24 QI:385|1|0.5|1|0|0|2|0|253 NbS00013005g0101.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|190 NbS00013005g0105.1 protein AED:0.60 eAED:0.63 QI:0|0|0|0.66|1|1|3|0|238 NbS00041131g0014.1 protein AED:0.00 eAED:0.00 QI:184|1|1|1|1|1|2|29|106; (*GB) gi|383290973|gb|AFH03064.1| (e_value=8e-12) R2R3-MYB transcription factor MYB12 [Epimedium sagittatum];; (*ITAG) Solyc05g008250.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2634996-2636547 transcript_region:SL2.40ch05:2634996..2636547- go_terms:GO:0003700 functional_description:"Myb-like transcription factor 6 (AHRD V1 **** Q8H256_GOSHI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00041131g0021.1 protein AED:0.02 eAED:0.02 QI:0|0.85|0.62|1|0.71|0.87|8|446|924; (*GB) gi|377652303|dbj|BAL63045.1| (e_value=0.0) peptidyl serine alpha-galactosyltransferase [Nicotiana tabacum];; (*TAIR) AT3G01720.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:262412-265608 REVERSE LENGTH=802;; (*ITAG) Solyc05g008260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2641082-2648464 transcript_region:SL2.40ch05:2641082..2648464- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q00Y41_OSTTA)"; NbS00041131g0023.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|1|1|3|278|571; (*GB) gi|255580487|ref|XP_002531069.1| (e_value=0.0) spore coat protein, putative [Ricinus communis];; (*SWP) sp|P07788|COTA_BACSU (e_value=5e-104) Spore coat protein A OS=Bacillus subtilis (strain 168) GN=cotA PE=1 SV=4;; (*TAIR) AT1G23010.1 (e_value=0.0) | Symbols: LPR1 | Cupredoxin superfamily protein | chr1:8147353-8149580 FORWARD LENGTH=581;; (*ITAG) Solyc05g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2661278-2665082 transcript_region:SL2.40ch05:2661278..2665082- go_terms:GO:0055114 functional_description:"Bilirubin oxidase (AHRD V1 ***- C6PN69_9CLOT); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0055114 NbS00041131g0019.1 protein AED:0.22 eAED:0.22 QI:331|1|0.66|1|1|1|3|0|415; (*GB) gi|225424186|ref|XP_002284132.1| (e_value=3e-85) PREDICTED: uncharacterized protein LOC100249220 [Vitis vinifera];; (*TAIR) AT1G23000.1 (e_value=1e-40) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:8143614-8144865 FORWARD LENGTH=358;; (*ITAG) Solyc05g008300.1.1 (e_value=6e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:2673136-2673954 transcript_region:SL2.40ch05:2673136..2673954- functional_description:"Unknown Protein (AHRD V1)"; NbS00041131g0022.1 protein AED:0.31 eAED:0.31 QI:4|0.88|0.8|0.9|0.66|0.6|10|0|430; (*GB) gi|356529048|ref|XP_003533109.1| (e_value=0.0) PREDICTED: uncharacterized lipoprotein syc1174_c-like [Glycine max];; (*SWP) sp|P08452|Y1174_SYNP6 (e_value=5e-116) Uncharacterized lipoprotein syc1174_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1174_c PE=4 SV=2;; (*ITAG) Solyc05g008270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2650065-2656908 transcript_region:SL2.40ch05:2650065..2656908- functional_description:"Uncharacterized membrane protein (AHRD V1 ***- Q0I7R7_SYNS3)"; NbS00032264g0002.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|1|1|2|0|773; (*GB) gi|224114581|ref|XP_002316801.1| (e_value=3e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15095.1 (e_value=2e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). | chr3:5081996-5084050 FORWARD LENGTH=684;; (*ITAG) Solyc07g062730.1.1 (e_value=5e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62648976-62651117 transcript_region:SL2.40ch07:62648976..62651117+ functional_description:"Chloroplast protein HCF243 (AHRD V1 *-*- Q9LIM5_ARATH)"; NbS00032506g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|224062143|ref|XP_002300776.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20515.1 (e_value=8e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8839041-8839595 REVERSE LENGTH=155;; (*ITAG) Solyc06g083880.2.1 (e_value=5e-60) genomic_reference:SL2.40ch06 gene_region:45469905-45470712 transcript_region:SL2.40ch06:45469905..45470712- functional_description:"Unknown Protein (AHRD V1)"; NbC25779787g0001.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|67 NbS00015025g0004.1 protein AED:0.15 eAED:0.15 QI:411|0.8|0.90|1|0.7|0.63|11|218|588; (*GB) gi|147866739|emb|CAN81171.1| (e_value=0.0) hypothetical protein VITISV_014022 [Vitis vinifera];; (*TAIR) AT5G47380.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF547 | chr5:19221472-19224471 REVERSE LENGTH=618;; (*ITAG) Solyc08g078520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59461187-59468560 transcript_region:SL2.40ch08:59461187..59468560+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *--- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00016963g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|289; (*GB) gi|359493630|ref|XP_002282825.2| (e_value=1e-143) PREDICTED: UDP-glycosyltransferase 79B6-like [Vitis vinifera];; (*SWP) sp|Q9FN26|U79B6_ARATH (e_value=5e-125) UDP-glycosyltransferase 79B6 OS=Arabidopsis thaliana GN=UGT79B6 PE=2 SV=1;; (*TAIR) AT5G54010.1 (e_value=3e-126) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:21919819-21921180 REVERSE LENGTH=453;; (*ITAG) Solyc04g010110.2.1 (e_value=1e-125) genomic_reference:SL2.40ch04 gene_region:3399938-3405925 transcript_region:SL2.40ch04:3399938..3405925+ go_terms:GO:0016757 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 ***- B6SU01_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00055232g0005.1 protein AED:0.29 eAED:0.30 QI:2|0.5|0.33|1|0.5|0.33|3|0|285; (*GB) gi|357509969|ref|XP_003625273.1| (e_value=3e-38) hypothetical protein MTR_7g093350 [Medicago truncatula];; (*TAIR) AT2G42040.1 (e_value=8e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17543282-17545063 FORWARD LENGTH=269;; (*ITAG) Solyc10g080530.1.1 (e_value=4e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61096979-61099234 transcript_region:SL2.40ch10:61096979..61099234- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR014977 WRC "; NbS00036042g0005.1 protein AED:0.32 eAED:0.32 QI:181|0.76|0.64|1|0.46|0.57|14|0|627; (*GB) gi|359481547|ref|XP_002276911.2| (e_value=0.0) PREDICTED: phosphoglycerate kinase-like [Vitis vinifera];; (*SWP) sp|Q42961|PGKH_TOBAC (e_value=3e-41) Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G12780.1 (e_value=5e-41) | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:4061127-4063140 REVERSE LENGTH=481;; (*ITAG) Solyc09g008130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1600648-1607197 transcript_region:SL2.40ch09:1600648..1607197- go_terms:GO:0006096,GO:0006400 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- B9IFP7_POPTR); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0006096,GO:0006400 NbS00045685g0008.1 protein AED:0.07 eAED:0.07 QI:0|1|0.85|1|1|1|7|300|516; (*GB) gi|225444021|ref|XP_002281628.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q91WM3|U3IP2_MOUSE (e_value=2e-90) U3 small nucleolar RNA-interacting protein 2 OS=Mus musculus GN=Rrp9 PE=1 SV=1;; (*TAIR) AT4G05410.1 (e_value=2e-168) | Symbols: YAO | Transducin/WD40 repeat-like superfamily protein | chr4:2743229-2745521 REVERSE LENGTH=504;; (*ITAG) Solyc02g069770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34165670-34174255 transcript_region:SL2.40ch02:34165670..34174255+ go_terms:GO:0034511,GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_CHLRE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0034511,GO:0000166 NbS00045685g0009.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|0|1|2|0|386; (*GB) gi|225444029|ref|XP_002281743.1| (e_value=3e-120) PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Vitis vinifera];; (*SWP) sp|P42698|DR111_ARATH (e_value=2e-110) DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2;; (*TAIR) AT1G30480.1 (e_value=2e-111) | Symbols: DRT111 | D111/G-patch domain-containing protein | chr1:10790315-10792423 FORWARD LENGTH=387;; (*ITAG) Solyc02g069790.2.1 (e_value=5e-161) genomic_reference:SL2.40ch02 gene_region:34197950-34202028 transcript_region:SL2.40ch02:34197950..34202028+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Splicing factor 45 (AHRD V1 ***- B6TI71_MAIZE); contains Interpro domain(s) IPR016967 Splicing factor, SPF45 "; GO:0003676,GO:0000166,GO:0005622 NbS00053052g0001.1 protein AED:0.27 eAED:0.28 QI:0|0.85|0.87|1|0.85|0.87|8|854|387; (*GB) gi|359494650|ref|XP_002263645.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261626 [Vitis vinifera];; (*TAIR) AT1G56180.1 (e_value=3e-173) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | chr1:21026243-21028047 REVERSE LENGTH=389;; (*ITAG) Solyc07g066620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65212626-65216103 transcript_region:SL2.40ch07:65212626..65216103+ functional_description:"Os02g0169000 protein (Fragment) (AHRD V1 ***- Q0E3K5_ORYSJ)"; NbS00053052g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|0.66|0.75|4|204|235; (*GB) gi|225462240|ref|XP_002262755.1| (e_value=8e-145) PREDICTED: peroxisomal 2,4-dienoyl-CoA reductase [Vitis vinifera];; (*SWP) sp|Q9LTV6|DECR2_ARATH (e_value=1e-121) Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1;; (*TAIR) AT3G12800.1 (e_value=8e-123) | Symbols: SDRB, DECR | short-chain dehydrogenase-reductase B | chr3:4063463-4064757 REVERSE LENGTH=298;; (*ITAG) Solyc07g066630.2.1 (e_value=6e-155) genomic_reference:SL2.40ch07 gene_region:65216475-65219626 transcript_region:SL2.40ch07:65216475..65219626- go_terms:GO:0008670 functional_description:"Oxidoreductase short-chain dehydrogenase/reductase (AHRD V1 **-* A9ICB4_BORPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008670 NbS00026868g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|660|189; (*GB) gi|266936|sp|P30155.1|RK27_TOBAC (e_value=5e-99) RecName: Full=50S ribosomal protein L27, chloroplastic; AltName: Full=CL27; Flags: Precursor;; (*SWP) sp|P30155|RK27_TOBAC (e_value=1e-100) 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1;; (*TAIR) AT5G40950.1 (e_value=2e-77) | Symbols: RPL27 | ribosomal protein large subunit 27 | chr5:16410866-16411845 FORWARD LENGTH=198;; (*ITAG) Solyc11g068820.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50513890-50516507 transcript_region:SL2.40ch11:50513890..50516507- go_terms:GO:0005840 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- Q8LEF5_ARATH); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005840 NbS00026868g0009.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.66|3|0|534; (*GB) gi|255536871|ref|XP_002509502.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G01930.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:319289-320777 REVERSE LENGTH=471;; (*ITAG) Solyc02g094190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00060357g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|109; (*ITAG) Solyc05g018090.1.1 (e_value=9e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:20013530-20016331 transcript_region:SL2.40ch05:20013530..20016331- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_PONAB); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC26018418g0003.1 protein AED:0.12 eAED:0.12 QI:76|0.5|1|1|1|1|3|394|288; (*GB) gi|225434965|ref|XP_002283929.1| (e_value=3e-91) PREDICTED: uncharacterized protein LOC100251857 [Vitis vinifera];; (*SWP) sp|O95208|EPN2_HUMAN (e_value=3e-11) Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3;; (*TAIR) AT3G46540.1 (e_value=9e-56) | Symbols: | ENTH/VHS family protein | chr3:17134204-17135411 REVERSE LENGTH=307;; (*ITAG) Solyc11g065940.1.1 (e_value=5e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48643230-48644948 transcript_region:SL2.40ch11:48643230..48644948+ go_terms:GO:0005488 functional_description:"Epsin 2-like protein (Fragment) (AHRD V1 *-*- D9HX40_LAGLG); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00033391g0006.1 protein AED:0.14 eAED:0.14 QI:195|0.85|0.87|1|0.85|1|8|383|567; (*GB) gi|359479362|ref|XP_002277357.2| (e_value=0.0) PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P08926|RUBA_PEA (e_value=0.0) RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2;; (*TAIR) AT2G28000.1 (e_value=0.0) | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha | chr2:11926603-11929184 FORWARD LENGTH=586;; (*ITAG) Solyc11g069790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51502451-51507359 transcript_region:SL2.40ch11:51502451..51507359- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbC24894711g0001.1 protein AED:0.29 eAED:0.52 QI:90|1|0|1|0|0|2|0|48 NbS00025676g0010.1 protein AED:0.34 eAED:0.34 QI:0|1|0.75|1|1|1|4|0|187; (*GB) gi|351723391|ref|NP_001237789.1| (e_value=7e-113) uncharacterized protein LOC100500164 [Glycine max];; (*SWP) sp|P42791|RL182_ARATH (e_value=2e-104) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2;; (*TAIR) AT3G05590.1 (e_value=1e-105) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187;; (*ITAG) Solyc01g099900.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:81786875-81789836 transcript_region:SL2.40ch01:81786875..81789836+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e "; GO:0003735,GO:0003723 NbS00025676g0009.1 protein AED:0.14 eAED:0.14 QI:208|1|0.66|1|1|1|3|0|315; (*GB) gi|190684635|gb|ACE82565.1| (e_value=0.0) epoxide hydrolase [Nicotiana benthamiana];; (*SWP) sp|P34913|HYES_HUMAN (e_value=2e-48) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT3G05600.1 (e_value=8e-153) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:1623485-1624704 REVERSE LENGTH=331;; (*ITAG) Solyc01g099910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81790682-81793630 transcript_region:SL2.40ch01:81790682..81793630- go_terms:GO:0003824 functional_description:"Epoxide hydrolase (AHRD V1 ***- B3VMR4_NICBE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00033734g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.75|1|1|0.75|4|190|266; (*GB) gi|365818539|gb|AEX00358.1| (e_value=5e-107) IAA15 [Solanum lycopersicum];; (*SWP) sp|P93830|IAA17_ARATH (e_value=1e-50) Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2;; (*TAIR) AT1G04250.1 (e_value=8e-52) | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229;; (*ITAG) Solyc03g120390.2.1 (e_value=1e-109) genomic_reference:SL2.40ch03 gene_region:62863354-62864903 transcript_region:SL2.40ch03:62863354..62864903+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00033734g0004.1 protein AED:0.18 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|225442729|ref|XP_002284941.1| (e_value=2e-148) PREDICTED: uncharacterized protein LOC100258273 isoform 2 [Vitis vinifera];; (*TAIR) AT1G64980.1 (e_value=1e-144) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:24137840-24138619 REVERSE LENGTH=259;; (*ITAG) Solyc06g066800.1.1 (e_value=2e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38377440-38378177 transcript_region:SL2.40ch06:38377440..38378177+ functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- B8HXH4_CYAP4)"; NbS00059283g0001.1 protein AED:0.43 eAED:0.43 QI:0|0.75|0.66|0.88|1|1|9|0|336; (*GB) gi|350539199|ref|NP_001234124.1| (e_value=0.0) partially similar to pantothenate kinase family protein [Solanum lycopersicum];; (*SWP) sp|Q8L5Y9|PANK2_ARATH (e_value=1e-138) Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2;; (*TAIR) AT4G32180.3 (e_value=3e-141) | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 | chr4:15538340-15543715 REVERSE LENGTH=783;; (*ITAG) Solyc05g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:195242-204180 transcript_region:SL2.40ch05:195242..204180+ go_terms:GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 **** C1MLQ0_MICPS); contains Interpro domain(s) IPR004567 Eukaryotic pantothenate kinase IPR011602 Fumble "; GO:0004594 NbS00008419g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.6|1|1|5|141|391; (*GB) gi|225464138|ref|XP_002265372.1| (e_value=1e-172) PREDICTED: pentatricopeptide repeat-containing protein At5g46100 [Vitis vinifera];; (*SWP) sp|Q9FNL2|PP418_ARATH (e_value=3e-153) Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1;; (*TAIR) AT5G46100.1 (e_value=2e-154) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:18694316-18695734 REVERSE LENGTH=472;; (*ITAG) Solyc02g077650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37116934-37118373 transcript_region:SL2.40ch02:37116934..37118373- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q513_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008419g0007.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0|2|0|248; (*GB) gi|224125586|ref|XP_002329841.1| (e_value=8e-105) predicted protein [Populus trichocarpa];; (*TAIR) AT5G46090.1 (e_value=1e-88) | Symbols: | Protein of unknown function (DUF679) | chr5:18693485-18694129 FORWARD LENGTH=214;; (*ITAG) Solyc02g077640.1.1 (e_value=3e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37115630-37116259 transcript_region:SL2.40ch02:37115630..37116259+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00021675g0001.1 protein AED:0.21 eAED:0.30 QI:0|0|0|1|1|1|3|0|399; (*GB) gi|115488128|ref|NP_001066551.1| (e_value=1e-20) Os12g0271600 [Oryza sativa Japonica Group];; (*ITAG) Solyc04g015110.2.1 (e_value=9e-29) genomic_reference:SL2.40ch04 gene_region:5283852-5286177 transcript_region:SL2.40ch04:5283852..5286177+ functional_description:"Myosin heavy chain-like protein (Fragment) (AHRD V1 *--- Q5K5B1_ORYSA); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00021675g0010.1 protein AED:0.43 eAED:0.43 QI:0|0.66|0.6|0.8|0.88|0.9|10|0|314; (*GB) gi|255579158|ref|XP_002530426.1| (e_value=2e-154) SEC14 cytosolic factor, putative [Ricinus communis];; (*TAIR) AT5G47730.1 (e_value=3e-139) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr5:19334592-19336618 REVERSE LENGTH=341;; (*ITAG) Solyc11g012790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5558186-5562111 transcript_region:SL2.40ch11:5558186..5562111- functional_description:"SEC14-like protein 1 (AHRD V1 **-- B6TAH4_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00021675g0008.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|0.5|2|0|115; (*GB) gi|297734157|emb|CBI15404.3| (e_value=1e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G18560.1 (e_value=4e-15) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690;; (*ITAG) Solyc03g119830.2.1 (e_value=3e-24) genomic_reference:SL2.40ch03 gene_region:62445233-62448653 transcript_region:SL2.40ch03:62445233..62448653- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q10P19_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00025206g0017.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.44|0.88|0.87|0.88|9|0|454; (*GB) gi|255546541|ref|XP_002514330.1| (e_value=0.0) aldehyde dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q56YU0|AL2C4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2;; (*TAIR) AT3G24503.1 (e_value=0.0) | Symbols: ALDH2C4, ALDH1A, REF1 | aldehyde dehydrogenase 2C4 | chr3:8919732-8923029 REVERSE LENGTH=501;; (*ITAG) Solyc12g007030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1463785-1469521 transcript_region:SL2.40ch12:1463785..1469521- go_terms:GO:0055114 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 ***- C5I9X1_ARTAN); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0055114 NbS00025206g0016.1 protein AED:0.00 eAED:0.00 QI:191|1|1|1|0|0|3|502|147; (*GB) gi|225445302|ref|XP_002284677.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100244080 [Vitis vinifera];; (*TAIR) AT3G24450.1 (e_value=8e-34) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:8880286-8881611 REVERSE LENGTH=140;; (*ITAG) Solyc01g105000.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:85070623-85071931 transcript_region:SL2.40ch01:85070623..85071931+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- D3GC04_9ROSI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00025206g0013.1 protein AED:0.02 eAED:0.02 QI:27|1|1|1|1|1|5|107|695; (*GB) gi|225445332|ref|XP_002281524.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245597 [Vitis vinifera];; (*TAIR) AT4G13370.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF936) | chr4:7777916-7780334 REVERSE LENGTH=673;; (*ITAG) Solyc12g007020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1459084-1462279 transcript_region:SL2.40ch12:1459084..1462279+ functional_description:"cDNA clone J033084B06 full insert sequence (AHRD V1 *-*- B7ESP0_ORYSJ); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00025206g0014.1 protein AED:0.19 eAED:0.19 QI:215|1|1|1|0.93|0.87|16|674|526; (*GB) gi|297738859|emb|CBI28104.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P53383|MRP_SYNY3 (e_value=1e-69) Protein mrp homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrp PE=3 SV=1;; (*TAIR) AT3G24430.1 (e_value=0.0) | Symbols: HCF101 | ATP binding | chr3:8868731-8872154 REVERSE LENGTH=532;; (*ITAG) Solyc12g007010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1447019-1453220 transcript_region:SL2.40ch12:1447019..1453220+ go_terms:GO:0005524 functional_description:"Cytosolic Fe-S cluster assembly factor NUBP2 homolog (AHRD V1 *--- NUBP2_NEMVE); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0005524 NbS00025206g0001.1 protein AED:0.31 eAED:0.31 QI:176|0|0.5|1|0|0.5|2|1221|152; (*GB) gi|224117268|ref|XP_002331738.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19590.1 (e_value=1e-59) | Symbols: | Protein of unknown function, DUF538 | chr5:6611614-6612069 REVERSE LENGTH=151;; (*ITAG) Solyc12g007000.1.1 (e_value=2e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1441098-1446514 transcript_region:SL2.40ch12:1441098..1446514+ functional_description:"POT family domain containing protein expressed (AHRD V1 *-*- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00012113g0013.1 protein AED:0.10 eAED:0.10 QI:110|0.88|0.9|1|0.44|0.6|10|373|436; (*GB) gi|225431229|ref|XP_002273358.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase family 3 member F1 [Vitis vinifera];; (*SWP) sp|Q70E96|AL3F1_ARATH (e_value=0.0) Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=2 SV=2;; (*TAIR) AT4G36250.1 (e_value=0.0) | Symbols: ALDH3F1 | aldehyde dehydrogenase 3F1 | chr4:17151029-17153381 FORWARD LENGTH=484;; (*ITAG) Solyc02g084640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42316560-42321101 transcript_region:SL2.40ch02:42316560..42321101+ go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** Q71LY7_ORYSI); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00012113g0011.1 protein AED:0.46 eAED:0.57 QI:34|0.33|0.25|0.75|1|1|4|261|74 NbS00012113g0015.1 protein AED:0.09 eAED:0.09 QI:217|0.75|0.55|1|0.87|0.77|9|333|877; (*GB) gi|297735062|emb|CBI17424.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD39|PMTR_ARATH (e_value=0.0) Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1;; (*TAIR) AT3G51070.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:18969068-18972291 FORWARD LENGTH=895;; (*ITAG) Solyc02g084670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42331379-42334842 transcript_region:SL2.40ch02:42331379..42334842- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbC25655825g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|108 NbC25655825g0003.1 protein AED:0.36 eAED:0.63 QI:2|0|0|1|0|0|2|0|65 NbS00035372g0005.1 protein AED:0.17 eAED:0.17 QI:261|0.91|0.84|1|0.91|0.92|13|0|353; (*GB) gi|255577735|ref|XP_002529743.1| (e_value=9e-143) syntaxin, putative [Ricinus communis];; (*SWP) sp|Q8VZU2|SY132_ARATH (e_value=5e-99) Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1;; (*TAIR) AT5G08080.1 (e_value=4e-100) | Symbols: SYP132, ATSYP132 | syntaxin of plants 132 | chr5:2588532-2591106 FORWARD LENGTH=304;; (*ITAG) Solyc07g052470.2.1 (e_value=9e-173) genomic_reference:SL2.40ch07 gene_region:58286256-58294483 transcript_region:SL2.40ch07:58286256..58294483+ go_terms:GO:0008565,GO:0050544 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0008565,GO:0050544 NbS00011641g0006.1 protein AED:0.34 eAED:0.34 QI:85|1|0.66|1|0|0|3|59|17 NbS00011641g0008.1 protein AED:0.20 eAED:0.20 QI:174|0.93|0.93|1|0.8|0.75|16|295|875; (*GB) gi|225463942|ref|XP_002269515.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=9e-140) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT1G22620.1 (e_value=0.0) | Symbols: ATSAC1 | Phosphoinositide phosphatase family protein | chr1:7997889-8002787 REVERSE LENGTH=912;; (*ITAG) Solyc11g022380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:13687543-13711810 transcript_region:SL2.40ch11:13687543..13711810+ go_terms:GO:0004439 functional_description:"Phosphatidylinositol phosphatase (AHRD V1 *-** D8LRT7_ECTSI); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439 NbS00027061g0010.1 protein AED:0.34 eAED:0.34 QI:0|0.87|0.77|1|0.5|0.55|9|0|336; (*GB) gi|255552215|ref|XP_002517152.1| (e_value=4e-167) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9C0Y8|YKM6_SCHPO (e_value=7e-16) UPF0613 protein PB24D3.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.06c PE=2 SV=1;; (*TAIR) AT5G19050.1 (e_value=2e-164) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6369307-6371726 FORWARD LENGTH=361;; (*ITAG) Solyc01g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71805945-71820466 transcript_region:SL2.40ch01:71805945..71820466- functional_description:"Dolichol-phosphate mannosyltransferase (AHRD V1 **-- C0NU33_AJECG); contains Interpro domain(s) IPR013744 Protein of unknown function DUF1749 "; NbS00027061g0011.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|0.33|3|0|717; (*GB) gi|225432528|ref|XP_002277614.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244329 [Vitis vinifera];; (*TAIR) AT3G06150.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861971-1863755 REVERSE LENGTH=594;; (*ITAG) Solyc01g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71794005-71796554 transcript_region:SL2.40ch01:71794005..71796554- functional_description:"Unknown Protein (AHRD V1)"; NbS00027061g0103.1 protein AED:0.12 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|118 NbS00027061g0107.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|643 NbS00027061g0110.1 protein AED:0.23 eAED:0.23 QI:215|1|1|1|1|1|9|411|274 NbS00004043g0013.1 protein AED:0.29 eAED:0.29 QI:10|0.85|0.8|1|0.85|0.86|15|0|568; (*GB) gi|224055474|ref|XP_002298511.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96PB1|CASD1_HUMAN (e_value=4e-56) CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1;; (*TAIR) AT2G34410.2 (e_value=0.0) | Symbols: | O-acetyltransferase family protein | chr2:14518719-14522053 FORWARD LENGTH=540;; (*ITAG) Solyc02g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35176956-35184955 transcript_region:SL2.40ch02:35176956..35184955+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00004043g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|0.5|0.66|3|339|391; (*GB) gi|255557405|ref|XP_002519733.1| (e_value=2e-66) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=1e-53) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1;; (*TAIR) AT1G29860.1 (e_value=8e-55) | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein 71 | chr1:10454482-10455652 FORWARD LENGTH=282;; (*ITAG) Solyc02g071130.2.1 (e_value=2e-108) genomic_reference:SL2.40ch02 gene_region:35189131-35190735 transcript_region:SL2.40ch02:35189131..35190735- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 ***- C9DI18_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00004043g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|224055487|ref|XP_002298513.1| (e_value=6e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|O49726|PUP9_ARATH (e_value=8e-50) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18220.1 (e_value=2e-51) | Symbols: | Drug/metabolite transporter superfamily protein | chr4:10078768-10080109 FORWARD LENGTH=344;; (*ITAG) Solyc02g071110.2.1 (e_value=3e-65) genomic_reference:SL2.40ch02 gene_region:35169375-35173055 transcript_region:SL2.40ch02:35169375..35173055- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00004043g0012.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|3|0|186; (*GB) gi|28261760|ref|NP_783274.1| (e_value=2e-71) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=6e-73) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-62) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=6e-74) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00035164g0001.1 protein AED:0.09 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|52547872|gb|AAU81956.1| (e_value=1e-24) ERF transcription factor 5 [Nicotiana tabacum];; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=6e-23) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=5e-24) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc04g014530.1.1 (e_value=4e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4802150-4802851 transcript_region:SL2.40ch04:4802150..4802851+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00035164g0007.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|415; (*GB) gi|255585566|ref|XP_002533472.1| (e_value=0.0) ATRAD3, putative [Ricinus communis];; (*TAIR) AT3G05390.1 (e_value=2e-94) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc10g052600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00014232g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.85|0.75|1|0.57|0.37|8|0|357; (*GB) gi|225470840|ref|XP_002265759.1| (e_value=4e-157) PREDICTED: choline/ethanolamine kinase [Vitis vinifera];; (*SWP) sp|Q9Y259|CHKB_HUMAN (e_value=1e-53) Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3;; (*TAIR) AT1G71697.1 (e_value=5e-149) | Symbols: ATCK1, CK, CK1 | choline kinase 1 | chr1:26971537-26973177 FORWARD LENGTH=346;; (*ITAG) Solyc04g072020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56687059-56690115 transcript_region:SL2.40ch04:56687059..56690115+ go_terms:GO:0004103 functional_description:"Choline kinase (AHRD V1 **** Q9AVR9_PEA); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004103 NbS00031242g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|2|1356|103; (*GB) gi|75241167|sp|Q84LF0.1|5EAS2_NICAT (e_value=5e-19) RecName: Full=5-epi-aristolochene synthase 2; Short=NaEAS37;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=1e-20) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*ITAG) Solyc01g101210.2.1 (e_value=3e-17) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00031242g0106.1 protein AED:0.37 eAED:0.37 QI:0|0.4|0.16|0.83|0.4|0.33|6|0|229 NbS00031242g0108.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.33|1|1|3|0|115 NbS00031242g0107.1 protein AED:0.46 eAED:0.52 QI:0|0|0|1|0|0|2|0|67 NbS00031242g0109.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0|2|0|62 NbS00015153g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0.5|1|1|1|2|117|126; (*GB) gi|224120802|ref|XP_002330955.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|P52837|F4ST_FLACH (e_value=2e-20) Flavonol 4'-sulfotransferase OS=Flaveria chlorifolia PE=1 SV=1;; (*TAIR) AT1G13420.1 (e_value=2e-19) | Symbols: ATST4B, ST4B | sulfotransferase 4B | chr1:4604871-4605866 FORWARD LENGTH=331;; (*ITAG) Solyc04g028380.1.1 (e_value=9e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:27186032-27186979 transcript_region:SL2.40ch04:27186032..27186979+ go_terms:GO:0080118 functional_description:"Sulfotransferase 5b (AHRD V1 **** C5H9Q0_BRARP); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00021135g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|104; (*GB) gi|41059853|gb|AAR99391.1| (e_value=3e-46) ACC synthase ACS2 [Nicotiana attenuata];; (*SWP) sp|Q9MB95|1A11_PRUMU (e_value=2e-28) 1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1;; (*TAIR) AT1G01480.1 (e_value=1e-25) | Symbols: ACS2, AT-ACC2 | 1-amino-cyclopropane-1-carboxylate synthase 2 | chr1:175862-178051 FORWARD LENGTH=496;; (*ITAG) Solyc12g056180.1.1 (e_value=8e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47503018-47506952 transcript_region:SL2.40ch12:47503018..47506952+ go_terms:GO:0042803 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 ***- Q9SC82_TOBAC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803 NbS00019737g0004.1 protein AED:0.28 eAED:0.21 QI:0|0.77|0.5|0.9|1|1|10|164|332; (*GB) gi|296085607|emb|CBI29382.3| (e_value=4e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=8e-57) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.1 (e_value=6e-58) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977727-5981899 REVERSE LENGTH=607;; (*ITAG) Solyc01g106080.2.1 (e_value=2e-61) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00048963g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|2346976|dbj|BAA21922.1| (e_value=1e-49) ZPT2-13 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=4e-30) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=3e-32) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc06g075780.1.1 (e_value=2e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43485594-43486058 transcript_region:SL2.40ch06:43485594..43486058+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013482g0006.1 protein AED:0.34 eAED:0.34 QI:339|0.4|0.66|1|0.2|0.5|6|139|135; (*GB) gi|357440627|ref|XP_003590591.1| (e_value=6e-22) Serine/threonine protein kinase Nek2 [Medicago truncatula];; (*SWP) sp|Q8RXT4|NEK4_ARATH (e_value=9e-23) Serine/threonine-protein kinase Nek4 OS=Arabidopsis thaliana GN=NEK4 PE=2 SV=1;; (*TAIR) AT3G63280.2 (e_value=7e-24) | Symbols: ATNEK4, NEK4 | NIMA-related kinase 4 | chr3:23378582-23381362 FORWARD LENGTH=555;; (*ITAG) Solyc01g097500.2.1 (e_value=3e-24) genomic_reference:SL2.40ch01 gene_region:80082833-80094266 transcript_region:SL2.40ch01:80082833..80094266- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00029797g0003.1 protein AED:0.15 eAED:0.15 QI:323|1|1|1|0.66|0.75|4|424|293; (*GB) gi|341833966|gb|AEK94318.1| (e_value=5e-85) disulfide isomerase-related protein [Pyrus x bretschneideri];; (*SWP) sp|Q93YX4|APRL5_ARATH (e_value=4e-61) 5'-adenylylsulfate reductase-like 5 OS=Arabidopsis thaliana GN=APRL5 PE=2 SV=1;; (*TAIR) AT3G03860.1 (e_value=3e-62) | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992465-994315 FORWARD LENGTH=300;; (*ITAG) Solyc01g005600.2.1 (e_value=4e-69) genomic_reference:SL2.40ch01 gene_region:420216-426321 transcript_region:SL2.40ch01:420216..426321- go_terms:GO:0045454 functional_description:"Adenosine 5&apos-phosphosulfate reductase 8 (AHRD V1 ***- Q5EUC2_MAIZE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00032951g0002.1 protein AED:0.18 eAED:0.18 QI:1156|0.76|0.78|0.92|0.84|0.78|14|0|527; (*GB) gi|75338884|sp|Q9ZR40.1|U2A2B_NICPL (e_value=0.0) RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subunit B;; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=0.0) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT1G60900.1 (e_value=0.0) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc12g008750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2109108-2115828 transcript_region:SL2.40ch12:2109108..2115828+ go_terms:GO:0003676,GO:0005634,GO:0000166 functional_description:"Splicing factor U2AF subunit (AHRD V1 ***- C5FT14_NANOT); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0003676,GO:0005634,GO:0000166 NbS00041025g0009.1 protein AED:0.22 eAED:0.23 QI:180|0.92|0.81|1|0.80|0.85|27|0|1460; (*GB) gi|225455842|ref|XP_002273382.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q24325|TAF2_DROME (e_value=2e-84) Transcription initiation factor TFIID subunit 2 OS=Drosophila melanogaster GN=Taf2 PE=1 SV=2;; (*TAIR) AT1G73960.1 (e_value=0.0) | Symbols: TAF2 | TBP-associated factor 2 | chr1:27805173-27814433 REVERSE LENGTH=1390;; (*ITAG) Solyc03g119780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62396383-62411459 transcript_region:SL2.40ch03:62396383..62411459- go_terms:GO:0008270 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 *--- C7G081_DICDI); contains Interpro domain(s) IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal "; GO:0008270 NbS00041025g0010.1 protein AED:0.38 eAED:0.39 QI:0|0.75|0.55|0.88|0.62|0.77|9|0|455; (*GB) gi|224117346|ref|XP_002331723.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q557M8|T2EA_DICDI (e_value=5e-13) General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1;; (*TAIR) AT1G03280.1 (e_value=4e-154) | Symbols: | Transcription factor TFIIE, alpha subunit | chr1:803635-806758 FORWARD LENGTH=479;; (*ITAG) Solyc03g119790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62415402-62423234 transcript_region:SL2.40ch03:62415402..62423234+ go_terms:GO:0006367 functional_description:"Transcription initiation factor IIE alpha subunit family protein (AHRD V1 ***- D7KCD4_ARALY); contains Interpro domain(s) IPR002853 Transcription factor TFIIE, alpha subunit "; GO:0006367 NbS00009041g0013.1 protein AED:0.21 eAED:0.21 QI:163|0.83|0.71|1|0.83|0.85|7|0|574; (*GB) gi|356543500|ref|XP_003540198.1| (e_value=0.0) PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=0.0) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=0.0) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc06g074940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42833203-42837088 transcript_region:SL2.40ch06:42833203..42837088+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- Q5A2T2_CANAL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00009041g0012.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|111; (*GB) gi|225436518|ref|XP_002273631.1| (e_value=8e-36) PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera];; (*TAIR) AT2G28085.1 (e_value=7e-21) | Symbols: | SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124;; (*ITAG) Solyc06g074950.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42841790-42842065 transcript_region:SL2.40ch06:42841790..42842065- go_terms:GO:0005516 functional_description:"Auxin-responsive family protein (AHRD V1 ***- Q8S8L5_ARATH); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00009424g0005.1 protein AED:0.34 eAED:0.34 QI:135|0.66|0.85|1|1|1|7|125|205; (*GB) gi|359473271|ref|XP_002277155.2| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100246806 [Vitis vinifera];; (*TAIR) AT1G27000.1 (e_value=3e-62) | Symbols: | Protein of unknown function (DUF1664) | chr1:9374068-9376422 FORWARD LENGTH=304;; (*ITAG) Solyc08g005230.2.1 (e_value=8e-87) genomic_reference:SL2.40ch08 gene_region:144167-150496 transcript_region:SL2.40ch08:144167..150496+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00009424g0006.1 protein AED:0.43 eAED:0.62 QI:46|0|0.5|1|1|1|2|0|46 NbS00009424g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc00g005420.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:2244285-2244817 transcript_region:SL2.40ch00:2244285..2244817+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028393g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.33|0.5|4|0|409; (*GB) gi|224095515|ref|XP_002310404.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O49447|ADT3_ARATH (e_value=0.0) ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=AAC3 PE=1 SV=1;; (*TAIR) AT4G28390.1 (e_value=0.0) | Symbols: AAC3, ATAAC3 | ADP/ATP carrier 3 | chr4:14041486-14042781 REVERSE LENGTH=379;; (*ITAG) Solyc07g053830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59571961-59574722 transcript_region:SL2.40ch07:59571961..59574722+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00028393g0004.1 protein AED:0.07 eAED:0.12 QI:0|0|0|1|0|0|3|0|253; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-38) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=4e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00031443g0007.1 protein AED:0.31 eAED:0.31 QI:204|0.42|0.12|1|0.14|0.25|8|0|195; (*GB) gi|224083771|ref|XP_002307118.1| (e_value=3e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT2G22120.2 (e_value=8e-26) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363;; (*ITAG) Solyc05g051800.2.1 (e_value=5e-50) genomic_reference:SL2.40ch05 gene_region:61323948-61327520 transcript_region:SL2.40ch05:61323948..61327520+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00031443g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|359480702|ref|XP_003632516.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100854604 [Vitis vinifera];; (*ITAG) Solyc04g054340.1.1 (e_value=4e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:51490617-51490868 transcript_region:SL2.40ch04:51490617..51490868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049424g0007.1 protein AED:0.17 eAED:0.17 QI:226|1|0.71|1|1|0.85|7|0|339; (*GB) gi|389986099|gb|AFL46167.1| (e_value=0.0) jasmonate ZIM domain protein c.1 [Nicotiana attenuata];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=1e-45) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.1 (e_value=8e-47) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6119968-6122691 FORWARD LENGTH=352;; (*ITAG) Solyc01g005440.2.1 (e_value=3e-158) genomic_reference:SL2.40ch01 gene_region:308888-312423 transcript_region:SL2.40ch01:308888..312423+ go_terms:GO:0042802 functional_description:"Jasmonate ZIM-domain protein 3 (AHRD V1 **-- B2XVS2_SOLLC); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00015951g0012.1 protein AED:0.27 eAED:0.27 QI:219|0.73|0.81|1|0.73|0.81|16|0|973; (*GB) gi|225436540|ref|XP_002274038.1| (e_value=4e-178) PREDICTED: ABC transporter G family member 15 [Vitis vinifera];; (*SWP) sp|Q8RWI9|AB15G_ARATH (e_value=7e-176) ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2;; (*TAIR) AT3G21090.1 (e_value=5e-177) | Symbols: | ABC-2 type transporter family protein | chr3:7391497-7394933 REVERSE LENGTH=691;; (*ITAG) Solyc11g065350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47868740-47875129 transcript_region:SL2.40ch11:47868740..47875129+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 15 (AHRD V1 ***- AB15G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016020,GO:0017111,GO:0016887 NbS00015951g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|3|511|482; (*GB) gi|255544912|ref|XP_002513517.1| (e_value=1e-161) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q91X20|ASH2L_MOUSE (e_value=2e-46) Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus musculus GN=Ash2l PE=1 SV=1;; (*TAIR) AT1G51450.1 (e_value=2e-158) | Symbols: TRO | TRAUCO | chr1:19074399-19076220 FORWARD LENGTH=509;; (*ITAG) Solyc11g065370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47895415-47898879 transcript_region:SL2.40ch11:47895415..47898879- functional_description:"Set1/Ash2 histone methyltransferase complex subunit ASH2 (AHRD V1 *-*- ASH2L_MOUSE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; NbS00010101g0019.1 protein AED:0.07 eAED:0.07 QI:382|0.33|0.25|1|0.33|0.25|4|0|488; (*GB) gi|629669|pir||S39507 (e_value=0.0) glucuronosyl transferase homolog, ripening-related - tomato (fragment);; (*SWP) sp|Q9SNB1|U7E11_ARATH (e_value=4e-127) UDP-glycosyltransferase 76E11 OS=Arabidopsis thaliana GN=UGT76E11 PE=2 SV=1;; (*TAIR) AT3G46670.1 (e_value=3e-128) | Symbols: UGT76E11 | UDP-glucosyl transferase 76E11 | chr3:17192795-17194227 REVERSE LENGTH=451;; (*ITAG) Solyc10g085230.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63824666-63826235 transcript_region:SL2.40ch10:63824666..63826235+ go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **** C0LNQ9_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00010101g0016.1 protein AED:0.09 eAED:0.09 QI:12|1|1|1|0.37|0.22|9|70|546; (*GB) gi|296084540|emb|CBI25561.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZP1|HPSE3_ARATH (e_value=0.0) Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2;; (*TAIR) AT5G34940.2 (e_value=0.0) | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235912-13238718 REVERSE LENGTH=536;; (*ITAG) Solyc10g085220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63813410-63821534 transcript_region:SL2.40ch10:63813410..63821534+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 *-*- Q10MX0_ORYSJ); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0016020,GO:0005743 NbS00010101g0004.1 protein AED:0.34 eAED:0.34 QI:241|0|0.5|1|0|0.5|2|112|133; (*GB) gi|224139144|ref|XP_002322991.1| (e_value=3e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|P33303|SFC1_YEAST (e_value=5e-16) Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFC1 PE=1 SV=2;; (*TAIR) AT5G01340.1 (e_value=1e-71) | Symbols: | Mitochondrial substrate carrier family protein | chr5:143240-144561 REVERSE LENGTH=309;; (*ITAG) Solyc10g085220.1.1 (e_value=4e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63813410-63821534 transcript_region:SL2.40ch10:63813410..63821534+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 *-*- Q10MX0_ORYSJ); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0016020,GO:0005743 NbS00010101g0018.1 protein AED:0.31 eAED:0.67 QI:0|0|0|1|0|0|3|0|91 NbS00057682g0004.1 protein AED:0.08 eAED:0.09 QI:231|0.6|0.66|1|0.6|0.33|6|0|380; (*GB) gi|225449126|ref|XP_002277282.1| (e_value=6e-114) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=7e-50) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=4e-75) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc04g050050.2.1 (e_value=2e-161) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00049104g0003.1 protein AED:0.27 eAED:0.27 QI:861|0.81|0.83|1|0.54|0.58|12|98|271; (*GB) gi|255581844|ref|XP_002531722.1| (e_value=4e-108) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G47900.6 (e_value=9e-77) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392556-19394963 FORWARD LENGTH=340;; (*ITAG) Solyc10g055620.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52566136-52568727 transcript_region:SL2.40ch10:52566136..52568727+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_MOUSE)"; NbS00023237g0004.1 protein AED:0.00 eAED:0.02 QI:257|1|0.8|1|1|1|5|180|945; (*GB) gi|356555040|ref|XP_003545847.1| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max];; (*SWP) sp|Q9DCD2|SYF1_MOUSE (e_value=0.0) Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1;; (*TAIR) AT5G28740.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:10780774-10783772 FORWARD LENGTH=917;; (*ITAG) Solyc01g086990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73674808-73683304 transcript_region:SL2.40ch01:73674808..73683304+ go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SYF1 (AHRD V1 ***- C0HB68_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00034556g0004.1 protein AED:0.00 eAED:0.00 QI:194|1|1|1|1|1|4|264|416; (*GB) gi|224088073|ref|XP_002308314.1| (e_value=1e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGT7|ARR18_ARATH (e_value=8e-11) Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2;; (*TAIR) AT2G03500.1 (e_value=3e-106) | Symbols: | Homeodomain-like superfamily protein | chr2:1059926-1062259 FORWARD LENGTH=432;; (*ITAG) Solyc12g006800.1.1 (e_value=7e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1221133-1223691 transcript_region:SL2.40ch12:1221133..1223691- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 **-- Q6Z869_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00037764g0011.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|604; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=0.0) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=0.0) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=0.0) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc03g093140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47765031-47767076 transcript_region:SL2.40ch03:47765031..47767076- go_terms:GO:0005351,GO:0015169 functional_description:"MFS family major facilitator transporter glycerol-3-phosphate cation symporter (AHRD V1 **** C9PNR4_9PAST); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00037764g0007.1 protein AED:0.36 eAED:0.44 QI:30|0.08|0.07|1|0.58|0.53|13|26|693; (*GB) gi|359490245|ref|XP_002268526.2| (e_value=4e-130) PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Vitis vinifera];; (*SWP) sp|Q9LVA2|PP443_ARATH (e_value=4e-76) Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1;; (*TAIR) AT5G62370.1 (e_value=3e-77) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:25041901-25044849 REVERSE LENGTH=982;; (*ITAG) Solyc03g093150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47798304-47801246 transcript_region:SL2.40ch03:47798304..47801246- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00034237g0013.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.5|0.83|0.6|0.83|6|188|460; (*GB) gi|225448601|ref|XP_002278665.1| (e_value=2e-150) PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Vitis vinifera];; (*SWP) sp|Q28HE5|S38A6_XENTR (e_value=3e-11) Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1;; (*TAIR) AT3G56200.1 (e_value=1e-115) | Symbols: | Transmembrane amino acid transporter family protein | chr3:20850087-20851779 FORWARD LENGTH=435;; (*ITAG) Solyc06g050790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30071620-30074658 transcript_region:SL2.40ch06:30071620..30074658+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9HYI5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00007824g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|275; (*GB) gi|225428029|ref|XP_002278836.1| (e_value=9e-127) PREDICTED: uncharacterized protein LOC100243471 [Vitis vinifera];; (*TAIR) AT2G16770.1 (e_value=6e-92) | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249;; (*ITAG) Solyc01g111580.2.1 (e_value=1e-148) genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00030741g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|0.75|1|1|4|0|290; (*GB) gi|6688529|emb|CAB65169.1| (e_value=3e-97) I-box binding factor [Solanum lycopersicum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-23) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G04760.1 (e_value=2e-70) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1373752-1374529 REVERSE LENGTH=215;; (*ITAG) Solyc11g006720.1.1 (e_value=1e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1335552-1337261 transcript_region:SL2.40ch11:1335552..1337261+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 ***- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00030741g0009.1 protein AED:0.24 eAED:0.29 QI:0|0|0|1|1|1|2|0|207; (*GB) gi|255545406|ref|XP_002513763.1| (e_value=5e-30) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLU7|P2B12_ARATH (e_value=2e-22) Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1;; (*TAIR) AT5G24560.1 (e_value=1e-23) | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B12 | chr5:8402205-8403266 FORWARD LENGTH=251;; (*ITAG) Solyc10g051160.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:47126920-47127962 transcript_region:SL2.40ch10:47126920..47127962+ go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00030741g0010.1 protein AED:0.27 eAED:0.27 QI:233|0|1|1|1|1|2|267|71; (*ITAG) Solyc11g006750.1.1 (e_value=5e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1349139-1349703 transcript_region:SL2.40ch11:1349139..1349703- functional_description:"Unknown Protein (AHRD V1)"; NbS00031110g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.82|0.73|0.96|0.86|0.83|30|0|1615; (*GB) gi|225436589|ref|XP_002275100.1| (e_value=0.0) PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Vitis vinifera];; (*SWP) sp|Q7KU24|CHD1_DROME (e_value=0.0) Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1;; (*TAIR) AT2G13370.1 (e_value=0.0) | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544601-5555543 REVERSE LENGTH=1724;; (*ITAG) Solyc12g099910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65193688-65213847 transcript_region:SL2.40ch12:65193688..65213847+ go_terms:GO:0005634,GO:0005524 functional_description:"Chromodomain helicase DNA binding protein 2 (Predicted) (AHRD V1 ***- D4AD08_RAT); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005634,GO:0005524 NbS00054986g0008.1 protein AED:0.24 eAED:0.24 QI:56|0.87|0.88|1|0.5|0.77|9|1100|191; (*GB) gi|363806748|ref|NP_001242275.1| (e_value=1e-29) uncharacterized protein LOC100781922 precursor [Glycine max];; (*TAIR) AT4G31340.2 (e_value=3e-26) | Symbols: | myosin heavy chain-related | chr4:15205662-15208895 FORWARD LENGTH=420;; (*ITAG) Solyc07g008970.2.1 (e_value=1e-66) genomic_reference:SL2.40ch07 gene_region:3992722-3999921 transcript_region:SL2.40ch07:3992722..3999921- functional_description:"Unknown Protein (AHRD V1)"; NbS00034347g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|530; (*GB) gi|30387023|emb|CAD89798.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|O82811|NRT21_ARATH (e_value=0.0) High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1;; (*TAIR) AT1G08090.1 (e_value=0.0) | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524139-2525920 FORWARD LENGTH=530;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00034347g0011.1 protein AED:0.04 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.5|4|0|576; (*GB) gi|30387023|emb|CAD89798.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|O82811|NRT21_ARATH (e_value=0.0) High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1;; (*TAIR) AT1G08090.1 (e_value=0.0) | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524139-2525920 FORWARD LENGTH=530;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00026899g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|325; (*GB) gi|359494714|ref|XP_002268559.2| (e_value=5e-117) PREDICTED: medium-chain-fatty-acid--CoA ligase-like, partial [Vitis vinifera];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=7e-84) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=5e-85) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc02g082910.2.1 (e_value=3e-180) genomic_reference:SL2.40ch02 gene_region:41119400-41123802 transcript_region:SL2.40ch02:41119400..41123802- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00026899g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|359494714|ref|XP_002268559.2| (e_value=5e-71) PREDICTED: medium-chain-fatty-acid--CoA ligase-like, partial [Vitis vinifera];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=6e-64) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=5e-65) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc02g082910.2.1 (e_value=1e-96) genomic_reference:SL2.40ch02 gene_region:41119400-41123802 transcript_region:SL2.40ch02:41119400..41123802- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00025271g0005.1 protein AED:0.36 eAED:0.43 QI:154|0.33|0.5|1|0|0|4|366|195; (*GB) gi|388499972|gb|AFK38052.1| (e_value=3e-21) unknown [Medicago truncatula];; (*TAIR) AT3G57280.1 (e_value=8e-21) | Symbols: | Transmembrane proteins 14C | chr3:21193960-21195547 FORWARD LENGTH=226;; (*ITAG) Solyc04g016440.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:7257601-7260651 transcript_region:SL2.40ch04:7257601..7260651- go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 ***- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00000936g0005.1 protein AED:0.15 eAED:0.25 QI:0|0.33|0.28|1|0.16|0.28|7|64|349; (*GB) gi|302143130|emb|CBI20425.3| (e_value=1e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=2e-92) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=2e-93) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063700.1.1 (e_value=5e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63315852-63319398 transcript_region:SL2.40ch07:63315852..63319398- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00000936g0001.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225461271|ref|XP_002284268.1| (e_value=1e-50) PREDICTED: calcium-binding protein PBP1 [Vitis vinifera];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=6e-34) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT5G54490.1 (e_value=5e-35) | Symbols: PBP1 | pinoid-binding protein 1 | chr5:22121458-22121841 FORWARD LENGTH=127;; (*ITAG) Solyc07g063690.1.1 (e_value=2e-68) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63311902-63312243 transcript_region:SL2.40ch07:63311902..63312243- go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-* D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00012072g0003.1 protein AED:0.62 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|97 NbS00012072g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.75|0.33|0|4|0|364; (*GB) gi|296082490|emb|CBI21495.3| (e_value=5e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=1e-25) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc04g072550.1.1 (e_value=1e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57126271-57127398 transcript_region:SL2.40ch04:57126271..57127398+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbC25746356g0001.1 protein AED:0.17 eAED:0.31 QI:12|-1|0|1|-1|1|1|0|55 NbC25746356g0002.1 protein AED:0.11 eAED:0.28 QI:40|-1|0|1|-1|0|1|0|55 NbS00000475g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|252; (*GB) gi|47824946|gb|AAT38720.1| (e_value=2e-65) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=2e-25) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=1e-26) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc07g052580.1.1 (e_value=2e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58385492-58387399 transcript_region:SL2.40ch07:58385492..58387399- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00000580g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|0.66|1|1|3|0|436; (*GB) gi|356544838|ref|XP_003540854.1| (e_value=3e-135) PREDICTED: uncharacterized protein LOC100813277 [Glycine max];; (*TAIR) AT4G15240.1 (e_value=4e-123) | Symbols: | Protein of unknown function (DUF604) | chr4:8703518-8705378 REVERSE LENGTH=488;; (*ITAG) Solyc07g052630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58420121-58424359 transcript_region:SL2.40ch07:58420121..58424359+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00019481g0001.1 protein AED:0.19 eAED:0.19 QI:769|1|1|1|0.5|0.44|9|257|220; (*GB) gi|356543710|ref|XP_003540303.1| (e_value=3e-126) PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-68) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=2e-119) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc12g005850.1.1 (e_value=2e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:481937-488981 transcript_region:SL2.40ch12:481937..488981- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00021808g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|227; (*GB) gi|356559831|ref|XP_003548200.1| (e_value=2e-93) PREDICTED: membrane steroid-binding protein 2-like [Glycine max];; (*SWP) sp|Q9XFM6|MSBP1_ARATH (e_value=1e-78) Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2;; (*TAIR) AT5G52240.1 (e_value=1e-79) | Symbols: MSBP1, ATMP1, AtMAPR5 | membrane steroid binding protein 1 | chr5:21213121-21214557 FORWARD LENGTH=220;; (*ITAG) Solyc03g025950.2.1 (e_value=3e-124) genomic_reference:SL2.40ch03 gene_region:7764256-7767163 transcript_region:SL2.40ch03:7764256..7767163+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 ***- C0NU44_AJECG); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00047032g0006.1 protein AED:0.26 eAED:0.26 QI:20|0.66|0.46|0.92|0.41|0.46|13|618|431; (*GB) gi|224123972|ref|XP_002330255.1| (e_value=3e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56440.1 (e_value=3e-94) | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21138765-21141482 REVERSE LENGTH=476;; (*ITAG) Solyc10g045540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30022962-30037990 transcript_region:SL2.40ch10:30022962..30037990+ go_terms:GO:0005488 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- O42205_XENLA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00035816g0003.1 protein AED:0.20 eAED:0.20 QI:166|1|1|1|0.66|0.75|4|828|161; (*GB) gi|297734936|emb|CBI17170.3| (e_value=1e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G45050.3 (e_value=4e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16476023-16477107 FORWARD LENGTH=158;; (*ITAG) Solyc04g007410.2.1 (e_value=5e-58) genomic_reference:SL2.40ch04 gene_region:1091223-1093103 transcript_region:SL2.40ch04:1091223..1093103- functional_description:"Os06g0731300 protein (Fragment) (AHRD V1 *-*- Q0D996_ORYSJ)"; NbS00057400g0006.1 protein AED:0.16 eAED:0.16 QI:285|0.57|0.62|1|0.57|0.5|8|232|671; (*GB) gi|1360090|emb|CAA64829.1| (e_value=0.0) C1C-Nt1 [Nicotiana tabacum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=0.0) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=0.0) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc01g103140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83556380-83563321 transcript_region:SL2.40ch01:83556380..83563321- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00010332g0004.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|204; (*ITAG) Solyc04g025130.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18068631-18069119 transcript_region:SL2.40ch04:18068631..18069119+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010332g0007.1 protein AED:0.13 eAED:0.13 QI:198|0.87|0.88|1|1|1|9|192|310; (*GB) gi|350537569|ref|NP_001233788.1| (e_value=0.0) DNA repair protein RAD51 homolog [Solanum lycopersicum];; (*SWP) sp|Q40134|RAD51_SOLLC (e_value=0.0) DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51 PE=2 SV=1;; (*TAIR) AT5G20850.1 (e_value=0.0) | Symbols: ATRAD51, RAD51 | RAS associated with diabetes protein 51 | chr5:7070758-7072860 REVERSE LENGTH=342;; (*ITAG) Solyc07g017540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7490189-7493859 transcript_region:SL2.40ch07:7490189..7493859- go_terms:GO:0005524 functional_description:"Rad51 DNA recombination/repair protein (AHRD V1 ***- B7G0B3_PHATR); contains Interpro domain(s) IPR011941 DNA repair protein RAD51 "; GO:0005524 NbS00005648g0007.1 protein AED:0.30 eAED:0.30 QI:188|1|0.87|1|1|0.87|8|0|270; (*GB) gi|356575959|ref|XP_003556103.1| (e_value=5e-161) PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q5SRE7|PHYD1_HUMAN (e_value=2e-81) Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2;; (*TAIR) AT2G01490.1 (e_value=4e-146) | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221316-223187 FORWARD LENGTH=283;; (*ITAG) Solyc05g007970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2390017-2393710 transcript_region:SL2.40ch05:2390017..2393710+ go_terms:GO:0005515 functional_description:"Phytanoyl-CoA dioxygenase (AHRD V1 ***- B6R8S2_9RHOB); contains Interpro domain(s) IPR008775 Phytanoyl-CoA dioxygenase "; GO:0005515 NbS00005648g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.2|1|1|5|0|343; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-21) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00005648g0008.1 protein AED:0.36 eAED:0.54 QI:0|0|0|1|0|0|3|0|152; (*ITAG) Solyc04g071390.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00006366g0007.1 protein AED:0.20 eAED:0.20 QI:411|1|1|1|0.75|0.6|5|1297|594; (*GB) gi|225447929|ref|XP_002266312.1| (e_value=0.0) PREDICTED: serine hydroxymethyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q54EW1|GLYC2_DICDI (e_value=0.0) Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1;; (*TAIR) AT1G36370.1 (e_value=0.0) | Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598;; (*ITAG) Solyc01g104000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84236401-84241786 transcript_region:SL2.40ch01:84236401..84241786+ go_terms:GO:0006563,GO:0030170 functional_description:"Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0006563,GO:0030170 NbS00006366g0006.1 protein AED:0.10 eAED:0.10 QI:391|1|0.5|1|1|1|2|0|346; (*GB) gi|255577302|ref|XP_002529532.1| (e_value=3e-155) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G22030.1 (e_value=1e-99) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7759337-7760415 REVERSE LENGTH=333;; (*ITAG) Solyc01g104010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84244325-84245487 transcript_region:SL2.40ch01:84244325..84245487- functional_description:"F2E2.8 (AHRD V1 ***- Q9LM58_ARATH)"; NbS00022328g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|697; (*GB) gi|356551446|ref|XP_003544086.1| (e_value=0.0) PREDICTED: putative serine/threonine-protein kinase-like protein CCR3-like [Glycine max];; (*SWP) sp|Q9LY50|ACCR3_ARATH (e_value=2e-174) Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1;; (*TAIR) AT3G55950.1 (e_value=1e-175) | Symbols: CCR3, ATCRR3 | CRINKLY4 related 3 | chr3:20753903-20756347 REVERSE LENGTH=814;; (*ITAG) Solyc05g052590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61947175-61949559 transcript_region:SL2.40ch05:61947175..61949559+ go_terms:GO:0042803 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0042803 NbS00019121g0006.1 protein AED:0.20 eAED:0.20 QI:43|0.85|0.79|1|0.75|0.75|29|0|913; (*GB) gi|302141769|emb|CBI18972.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|D8WUA4|SECA2_ARATH (e_value=0.0) Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1;; (*TAIR) AT1G21650.2 (e_value=0.0) | Symbols: SECA2 | Preprotein translocase SecA family protein | chr1:7592891-7600590 REVERSE LENGTH=1058;; (*ITAG) Solyc11g005020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28149-44175 transcript_region:SL2.40ch11:28149..44175- go_terms:GO:0006886,GO:0016020 functional_description:"Protein translocase subunit secA (AHRD V1 ***- B9GTZ6_POPTR); contains Interpro domain(s) IPR000185 SecA protein "; GO:0006886,GO:0016020 NbS00010164g0020.1 protein AED:0.05 eAED:0.05 QI:178|1|1|1|0.8|0.66|6|194|455; (*GB) gi|283837097|emb|CBH19893.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=3e-136) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33270.1 (e_value=0.0) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc03g096870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52685884-52688473 transcript_region:SL2.40ch03:52685884..52688473- go_terms:GO:0004872,GO:0008022 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872,GO:0008022 NbS00010164g0019.1 protein AED:0.06 eAED:0.06 QI:179|1|1|1|0.86|0.86|23|329|1325; (*GB) gi|356533261|ref|XP_003535184.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase tsuA-like [Glycine max];; (*SWP) sp|Q9NRP7|STK36_HUMAN (e_value=8e-103) Serine/threonine-protein kinase 36 OS=Homo sapiens GN=STK36 PE=1 SV=2;; (*TAIR) AT1G50240.2 (e_value=0.0) | Symbols: FU | Protein kinase family protein with ARM repeat domain | chr1:18607063-18614094 FORWARD LENGTH=1322;; (*ITAG) Solyc03g096890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:52698958-52711178 transcript_region:SL2.40ch03:52698958..52711178- go_terms:GO:0006468 functional_description:"Serine/threonine kinase (AHRD V1 *-*- C4Q278_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010164g0024.1 protein AED:0.22 eAED:0.31 QI:0|0|0|1|1|1|3|0|184; (*GB) gi|224104321|ref|XP_002313395.1| (e_value=2e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58920.1 (e_value=6e-66) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23793239-23794014 FORWARD LENGTH=162;; (*ITAG) Solyc02g087650.2.1 (e_value=8e-81) genomic_reference:SL2.40ch02 gene_region:44594705-44595462 transcript_region:SL2.40ch02:44594705..44595462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010164g0022.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|119; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=1e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=1e-49) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=9e-51) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc01g094560.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:77748472-77751106 transcript_region:SL2.40ch01:77748472..77751106- go_terms:GO:0003735 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735 NbS00010164g0023.1 protein AED:0.04 eAED:0.57 QI:0|1|0.25|1|1|1|4|0|821; (*GB) gi|357474227|ref|XP_003607398.1| (e_value=3e-24) hypothetical protein MTR_4g077590 [Medicago truncatula];; (*TAIR) AT5G17160.1 (e_value=2e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast hits to 10381 proteins in 896 species: Archae - 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants - 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI BLink). | chr5:5639843-5642427 REVERSE LENGTH=569;; (*ITAG) Solyc06g072810.2.1 (e_value=2e-97) genomic_reference:SL2.40ch06 gene_region:41291876-41295402 transcript_region:SL2.40ch06:41291876..41295402- functional_description:"Unknown Protein (AHRD V1)"; NbS00010164g0021.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|79; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=2e-21) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=2e-22) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc03g025520.2.1 (e_value=2e-24) genomic_reference:SL2.40ch03 gene_region:7288938-7290880 transcript_region:SL2.40ch03:7288938..7290880+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735,GO:0003723 NbS00018603g0010.1 protein AED:0.27 eAED:0.34 QI:0|0.25|0|1|0.25|0.4|5|0|908; (*GB) gi|225451426|ref|XP_002273717.1| (e_value=5e-144) PREDICTED: F-box/kelch-repeat protein At3g27150-like [Vitis vinifera];; (*SWP) sp|Q9LI89|FBK70_ARATH (e_value=9e-112) F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1;; (*TAIR) AT3G27150.1 (e_value=7e-113) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:10009692-10010960 REVERSE LENGTH=422;; (*ITAG) Solyc07g009410.2.1 (e_value=7e-150) genomic_reference:SL2.40ch07 gene_region:4479008-4481086 transcript_region:SL2.40ch07:4479008..4481086+ go_terms:GO:0005529 functional_description:"Kelch-like protein 7 (AHRD V1 *--- KLHL7_CHICK); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005529 NbS00018603g0009.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0|1|0|0|4|0|267; (*GB) gi|224146691|ref|XP_002326100.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=6e-100) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=4e-100) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc00g289230.1.1 (e_value=9e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21012487-21013976 transcript_region:SL2.40ch00:21012487..21013976- go_terms:GO:0004672 functional_description:"Receptor protein kinase (AHRD V1 **** Q40096_IPOTF); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00018603g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|255559757|ref|XP_002520898.1| (e_value=5e-30) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0WQM8|FB58_ARATH (e_value=4e-12) F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2 SV=1;; (*TAIR) AT1G53790.1 (e_value=3e-13) | Symbols: | F-box and associated interaction domains-containing protein | chr1:20079694-20081394 REVERSE LENGTH=444;; (*ITAG) Solyc09g098350.2.1 (e_value=4e-31) genomic_reference:SL2.40ch09 gene_region:67465106-67466769 transcript_region:SL2.40ch09:67465106..67466769+ functional_description:"F-box family protein (AHRD V1 ***- D7MFP4_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00036215g0001.1 protein AED:0.20 eAED:0.24 QI:411|0.5|0.54|1|1|1|11|311|609; (*GB) gi|224096772|ref|XP_002310730.1| (e_value=3e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=2e-71) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=3e-29) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc02g090710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46809258-46814499 transcript_region:SL2.40ch02:46809258..46814499+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os01g0234100 (AHRD V1 ***- Y1341_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00041492g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|190; (*ITAG) Solyc05g013370.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:6447254-6447952 transcript_region:SL2.40ch05:6447254..6447952+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00061351g0003.1 protein AED:0.08 eAED:0.08 QI:115|1|0.88|1|0.87|0.77|9|0|279; (*GB) gi|359485843|ref|XP_002268284.2| (e_value=3e-130) PREDICTED: nudix hydrolase 2-like [Vitis vinifera];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=3e-111) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=2e-112) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc05g016690.2.1 (e_value=4e-155) genomic_reference:SL2.40ch05 gene_region:17845583-17849239 transcript_region:SL2.40ch05:17845583..17849239- go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00002614g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|1|1|1|3|413|193; (*GB) gi|294462628|gb|ADE76860.1| (e_value=1e-19) unknown [Picea sitchensis];; (*TAIR) AT1G16840.2 (e_value=5e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5763499-5763984 REVERSE LENGTH=161;; (*ITAG) Solyc07g008770.2.1 (e_value=1e-61) genomic_reference:SL2.40ch07 gene_region:3751190-3755390 transcript_region:SL2.40ch07:3751190..3755390+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002614g0012.1 protein AED:0.40 eAED:0.40 QI:31|1|1|1|0.5|0.6|5|36|298; (*GB) gi|225470670|ref|XP_002269262.1| (e_value=7e-85) PREDICTED: uncharacterized protein LOC100255532 [Vitis vinifera];; (*TAIR) AT4G29960.1 (e_value=4e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14660753-14662274 REVERSE LENGTH=291;; (*ITAG) Solyc07g008780.2.1 (e_value=2e-132) genomic_reference:SL2.40ch07 gene_region:3757516-3765647 transcript_region:SL2.40ch07:3757516..3765647+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059178g0007.1 protein AED:0.25 eAED:0.25 QI:31|1|0.83|1|1|1|6|340|182; (*GB) gi|225459136|ref|XP_002285702.1| (e_value=3e-84) PREDICTED: protein CutA, chloroplastic [Vitis vinifera];; (*SWP) sp|P93009|CUTA_ARATH (e_value=1e-71) Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1;; (*TAIR) AT2G33740.2 (e_value=9e-73) | Symbols: CUTA | Nitrogen regulatory PII-like, alpha/beta | chr2:14269590-14271523 FORWARD LENGTH=182;; (*ITAG) Solyc04g076050.2.1 (e_value=5e-103) genomic_reference:SL2.40ch04 gene_region:58617263-58620721 transcript_region:SL2.40ch04:58617263..58620721+ go_terms:GO:0005507,GO:0019899 functional_description:"Divalent cation tolerance protein CutA (AHRD V1 *-*- Q3Z664_DEHE1); contains Interpro domain(s) IPR004323 Divalent ion tolerance protein, CutA1 "; GO:0005507,GO:0019899 NbS00059178g0006.1 protein AED:0.29 eAED:0.31 QI:0|0.75|0.6|1|0.5|0.4|5|621|306; (*GB) gi|15419924|gb|AAK97210.1|AF299256_1 (e_value=1e-176) 14-3-3 protein isoform g [Nicotiana tabacum];; (*SWP) sp|P93207|14310_SOLLC (e_value=6e-171) 14-3-3 protein 10 OS=Solanum lycopersicum GN=TFT10 PE=2 SV=2;; (*TAIR) AT5G65430.1 (e_value=1e-152) | Symbols: GRF8, 14-3-3KAPPA, GF14 KAPPA | general regulatory factor 8 | chr5:26148546-26150255 REVERSE LENGTH=248;; (*ITAG) Solyc04g076060.2.1 (e_value=4e-172) genomic_reference:SL2.40ch04 gene_region:58620807-58625601 transcript_region:SL2.40ch04:58620807..58625601- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-B (AHRD V1 **-- 143BB_XENLA); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00007573g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.71|0.85|0.83|0.71|7|24|306; (*GB) gi|297844648|ref|XP_002890205.1| (e_value=4e-113) hypothetical protein ARALYDRAFT_471912 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q54WR5|CCD94_DICDI (e_value=7e-60) Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1;; (*TAIR) AT1G17130.2 (e_value=9e-116) | Symbols: | Family of unknown function (DUF572) | chr1:5854264-5856472 FORWARD LENGTH=338;; (*ITAG) Solyc08g074420.2.1 (e_value=5e-137) genomic_reference:SL2.40ch08 gene_region:55706856-55712251 transcript_region:SL2.40ch08:55706856..55712251+ functional_description:"Coiled-coil domain-containing protein 130 (AHRD V1 *--- CC130_BOVIN); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; NbS00029496g0013.1 protein AED:0.05 eAED:0.05 QI:80|0.87|0.77|1|0.5|0.55|9|0|388; (*GB) gi|225427312|ref|XP_002282079.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100243743 [Vitis vinifera];; (*TAIR) AT5G46560.1 (e_value=5e-85) | Symbols: | CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890090 FORWARD LENGTH=387;; (*ITAG) Solyc08g077250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58342092-58346823 transcript_region:SL2.40ch08:58342092..58346823- go_terms:GO:0005639 functional_description:"Genomic DNA chromosome 5 BAC clone F10E10 (AHRD V1 ***- Q9LS27_ARATH); contains Interpro domain(s) IPR018996 Inner nuclear membrane protein MAN1, C-terminal "; GO:0005639 NbS00029496g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|6|350|617; (*GB) gi|171705256|gb|ACB54686.1| (e_value=0.0) methyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q94EJ6|PMTE_ARATH (e_value=0.0) Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1;; (*TAIR) AT4G18030.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10012850-10015267 REVERSE LENGTH=621;; (*ITAG) Solyc08g077240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58331350-58338442 transcript_region:SL2.40ch08:58331350..58338442- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7MCX6_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00031352g0005.1 protein AED:0.30 eAED:0.32 QI:205|0|0.5|1|0|0.5|2|0|64 NbS00031352g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|83 NbC24913778g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|357487631|ref|XP_003614103.1| (e_value=2e-42) Aspartic proteinase nepenthesin-1 [Medicago truncatula];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=4e-28) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=4e-36) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc08g005830.1.1 (e_value=2e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:639362-640702 transcript_region:SL2.40ch08:639362..640702+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00030241g0010.1 protein AED:0.14 eAED:0.14 QI:367|1|1|1|1|1|4|434|166; (*GB) gi|147803507|emb|CAN68722.1| (e_value=5e-94) hypothetical protein VITISV_033681 [Vitis vinifera];; (*SWP) sp|O22165|RLP24_ARATH (e_value=1e-78) Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=2 SV=1;; (*TAIR) AT2G44860.2 (e_value=1e-79) | Symbols: | Ribosomal protein L24e family protein | chr2:18501034-18502128 REVERSE LENGTH=159;; (*ITAG) Solyc10g078660.1.1 (e_value=8e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59721816-59723828 transcript_region:SL2.40ch10:59721816..59723828+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- Q16LE3_AEDAE); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00030241g0011.1 protein AED:0.38 eAED:0.39 QI:40|0.30|0.28|0.92|0.53|0.57|14|0|654; (*GB) gi|359481849|ref|XP_002276633.2| (e_value=3e-128) PREDICTED: protein RRP5 homolog [Vitis vinifera];; (*TAIR) AT3G11964.1 (e_value=5e-95) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00030241g0002.1 protein AED:0.38 eAED:0.43 QI:0|0.3|0.18|0.90|1|1|11|401|437; (*GB) gi|255581558|ref|XP_002531584.1| (e_value=7e-140) programmed cell death protein, putative [Ricinus communis];; (*SWP) sp|Q14690|RRP5_HUMAN (e_value=3e-47) Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3;; (*TAIR) AT3G11964.1 (e_value=4e-90) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=2e-177) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00035557g0003.1 protein AED:0.10 eAED:0.11 QI:286|1|0.5|1|0|0.5|2|0|442; (*GB) gi|225428312|ref|XP_002282945.1| (e_value=0.0) PREDICTED: probable anion transporter 5 [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=0.0) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=0.0) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00035557g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.4|0.36|1|0.4|0.45|11|0|621; (*GB) gi|225435510|ref|XP_002285548.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera];; (*TAIR) AT5G12950.1 (e_value=0.0) | Symbols: | Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4093117-4096806 FORWARD LENGTH=861;; (*ITAG) Solyc12g100120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65308503-65313592 transcript_region:SL2.40ch12:65308503..65313592+ functional_description:"Acetyl-CoA carboxylase-like protein (AHRD V1 *-*- Q8ABH3_BACTN); contains Interpro domain(s) IPR012878 Protein of unknown function DUF1680 "; NbS00035557g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|234; (*GB) gi|225428312|ref|XP_002282945.1| (e_value=3e-125) PREDICTED: probable anion transporter 5 [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=9e-101) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=7e-102) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=3e-147) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00035557g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|255639088|gb|ACU19844.1| (e_value=2e-124) unknown [Glycine max];; (*SWP) sp|Q53P54|PHT46_ORYSJ (e_value=1e-113) Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=3e-112) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=5e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00035557g0012.1 protein AED:0.60 eAED:0.61 QI:0|0|0|0.5|0|0.5|2|0|65 NbS00028213g0012.1 protein AED:0.20 eAED:0.20 QI:160|1|1|1|0.85|0.95|22|420|795; (*GB) gi|359476862|ref|XP_002262862.2| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 35-like [Vitis vinifera];; (*SWP) sp|Q7X659|VP35A_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1;; (*TAIR) AT2G17790.1 (e_value=0.0) | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733685-7739344 FORWARD LENGTH=787;; (*ITAG) Solyc02g083560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41498304-41507470 transcript_region:SL2.40ch02:41498304..41507470+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00028213g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|0.66|3|0|119; (*GB) gi|356544896|ref|XP_003540883.1| (e_value=5e-79) PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Glycine max];; (*SWP) sp|P35133|UBC10_ARATH (e_value=3e-78) Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1;; (*TAIR) AT5G53300.4 (e_value=2e-79) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc02g083570.2.1 (e_value=1e-86) genomic_reference:SL2.40ch02 gene_region:41507853-41509331 transcript_region:SL2.40ch02:41507853..41509331- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00028213g0006.1 protein AED:0.77 eAED:0.77 QI:53|0|0.25|0.5|1|1|4|0|67 NbS00041881g0004.1 protein AED:0.00 eAED:0.00 QI:293|1|1|1|0.5|0.66|3|340|304; (*GB) gi|225446835|ref|XP_002283603.1| (e_value=4e-77) PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera];; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=4e-50) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1;; (*TAIR) AT1G29860.1 (e_value=3e-51) | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein 71 | chr1:10454482-10455652 FORWARD LENGTH=282;; (*ITAG) Solyc07g056280.2.1 (e_value=4e-101) genomic_reference:SL2.40ch07 gene_region:61460392-61463054 transcript_region:SL2.40ch07:61460392..61463054+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 *-*- Q7X7E3_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00042416g0009.1 protein AED:0.13 eAED:0.13 QI:256|0.8|0.66|1|0.4|0.5|6|520|218; (*GB) gi|147837826|emb|CAN60931.1| (e_value=4e-87) hypothetical protein VITISV_006813 [Vitis vinifera];; (*SWP) sp|Q8GW78|CLP41_ARATH (e_value=8e-61) Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1;; (*TAIR) AT4G25370.1 (e_value=4e-69) | Symbols: | Double Clp-N motif protein | chr4:12972747-12974580 FORWARD LENGTH=238;; (*ITAG) Solyc03g007110.2.1 (e_value=2e-103) genomic_reference:SL2.40ch03 gene_region:1704206-1709141 transcript_region:SL2.40ch03:1704206..1709141- go_terms:GO:0019538 functional_description:"ATP-dependent Clp protease ATP-binding subunit ClpC (AHRD V1 *-*- D6KVC7_SCAIO); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00010683g0003.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|158518418|sp|P83326.2|PMEI_ACTDE (e_value=9e-39) RecName: Full=Pectinesterase inhibitor; AltName: Full=AdPMEI; Short=PMEI; AltName: Full=Pectin methylesterase inhibitor; Flags: Precursor;; (*SWP) sp|P83326|PMEI_ACTDE (e_value=3e-40) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*TAIR) AT3G17220.1 (e_value=3e-20) | Symbols: ATPMEI2, PMEI2 | pectin methylesterase inhibitor 2 | chr3:5883328-5883849 REVERSE LENGTH=173;; (*ITAG) Solyc03g112180.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56728543-56729061 transcript_region:SL2.40ch03:56728543..56729061+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** A7IZL3_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00010683g0013.1 protein AED:0.18 eAED:0.18 QI:194|1|1|1|1|1|2|448|217; (*GB) gi|3024504|sp|Q40521.1|RB11B_TOBAC (e_value=6e-158) RecName: Full=Ras-related protein Rab11B;; (*SWP) sp|Q40521|RB11B_TOBAC (e_value=2e-159) Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-145) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc12g014080.1.1 (e_value=1e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4894053-4896737 transcript_region:SL2.40ch12:4894053..4896737- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00010683g0019.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|0.66|1|1|3|0|88 NbS00010683g0020.1 protein AED:0.26 eAED:0.29 QI:0|0.85|0.62|1|0.85|0.87|8|0|496; (*GB) gi|302142934|emb|CBI20229.3| (e_value=4e-105) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G53200.1 (e_value=3e-29) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19840486-19843169 REVERSE LENGTH=613;; (*ITAG) Solyc12g014090.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4901928-4915321 transcript_region:SL2.40ch12:4901928..4915321- functional_description:"Unknown Protein (AHRD V1)"; NbS00010683g0017.1 protein AED:0.10 eAED:0.32 QI:0|0|0|1|0|0|4|0|288; (*ITAG) Solyc12g011200.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4045306-4047487 transcript_region:SL2.40ch12:4045306..4047487- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 ***- C9DI18_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010683g0016.1 protein AED:0.31 eAED:0.58 QI:0|0|0|1|0|0|3|0|100 NbS00040391g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|0|0.33|3|0|331; (*GB) gi|224096171|ref|XP_002310560.1| (e_value=4e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=6e-71) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT1G34670.1 (e_value=1e-97) | Symbols: AtMYB93, MYB93 | myb domain protein 93 | chr1:12709128-12710423 FORWARD LENGTH=365;; (*ITAG) Solyc05g051550.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61076188-61078333 transcript_region:SL2.40ch05:61076188..61078333+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00017947g0014.1 protein AED:0.06 eAED:0.09 QI:0|0.75|0.46|0.92|0.5|0.46|13|0|2092; (*GB) gi|359473443|ref|XP_002264500.2| (e_value=0.0) PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=0.0) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=0.0) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00017947g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|171; (*ITAG) Solyc05g005650.1.1 (e_value=9e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:488527-489039 transcript_region:SL2.40ch05:488527..489039- functional_description:"Unknown Protein (AHRD V1)"; NbS00008636g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|255547652|ref|XP_002514883.1| (e_value=6e-41) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G24270.1 (e_value=2e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 84 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8608123-8608743 REVERSE LENGTH=206;; (*ITAG) Solyc11g012060.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5004069-5004926 transcript_region:SL2.40ch11:5004069..5004926- functional_description:"Unknown Protein (AHRD V1)"; NbS00013471g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.75|1|1|1|4|335|208; (*GB) gi|365818537|gb|AEX00357.1| (e_value=3e-94) IAA14 [Solanum lycopersicum];; (*SWP) sp|Q38832|IAA14_ARATH (e_value=9e-86) Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2;; (*TAIR) AT4G14550.1 (e_value=7e-87) | Symbols: IAA14, SLR | indole-3-acetic acid inducible 14 | chr4:8348521-8349923 REVERSE LENGTH=228;; (*ITAG) Solyc09g083290.2.1 (e_value=5e-97) genomic_reference:SL2.40ch09 gene_region:64364269-64367389 transcript_region:SL2.40ch09:64364269..64367389+ go_terms:GO:0005515 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515 NbS00008536g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|329; (*GB) gi|255584125|ref|XP_002532803.1| (e_value=9e-162) Peroxidase 16 precursor, putative [Ricinus communis];; (*SWP) sp|Q96518|PER16_ARATH (e_value=2e-158) Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2;; (*TAIR) AT2G18980.1 (e_value=1e-159) | Symbols: | Peroxidase superfamily protein | chr2:8233419-8235294 REVERSE LENGTH=323;; (*ITAG) Solyc07g017880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8260969-8263025 transcript_region:SL2.40ch07:8260969..8263025- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** D4NYQ9_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00013014g0110.1 protein AED:0.00 eAED:0.00 QI:501|1|0.5|1|0|0.5|2|0|102 NbS00013014g0101.1 protein AED:0.19 eAED:0.21 QI:0|0.66|0.61|0.92|1|1|13|366|601 NbS00013014g0112.1 protein AED:0.21 eAED:0.21 QI:56|0.75|0.4|0.8|1|1|5|0|542 NbS00013014g0104.1 protein AED:0.48 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|62 NbS00033284g0007.1 protein AED:0.32 eAED:0.34 QI:0|0.66|0.5|1|1|1|4|765|96; (*GB) gi|380853856|gb|AFE88235.1| (e_value=1e-46) acyl-carrier-protein S-malonyltransferase [Nicotiana tabacum];; (*TAIR) AT2G30200.2 (e_value=2e-49) | Symbols: | catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | chr2:12883340-12885482 REVERSE LENGTH=369;; (*ITAG) Solyc01g006980.2.1 (e_value=4e-49) genomic_reference:SL2.40ch01 gene_region:1552093-1555934 transcript_region:SL2.40ch01:1552093..1555934+ go_terms:GO:0008152,GO:0006633 functional_description:"Malonyl CoA-acyl carrier protein transacylase containing protein expressed (AHRD V1 ***- Q10MS3_ORYSJ); contains Interpro domain(s) IPR004410 Malonyl CoA-acyl carrier protein transacylase "; GO:0008152,GO:0006633 NbS00008409g0006.1 protein AED:0.08 eAED:0.08 QI:75|1|1|1|1|1|2|362|474; (*GB) gi|242199346|gb|ACS87994.1| (e_value=0.0) UDP-glucosyltransferase family 1 protein [Citrus sinensis];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=6e-104) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=4e-105) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc03g078770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44997523-44999211 transcript_region:SL2.40ch03:44997523..44999211+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **** Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00008409g0002.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|450; (*GB) gi|133711801|gb|ABO36619.1| (e_value=3e-109) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=9e-26) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50120.1 (e_value=1e-44) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc03g078830.1.1 (e_value=3e-136) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:45080841-45082160 transcript_region:SL2.40ch03:45080841..45082160- functional_description:"CM0545.450.nc protein (AHRD V1 **-- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00056660g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|157042759|gb|ABV02031.1| (e_value=2e-154) sucrose responsive element binding factor 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=3e-70) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=1e-72) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc04g078420.1.1 (e_value=5e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60755266-60756252 transcript_region:SL2.40ch04:60755266..60756252- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00060776g0007.1 protein AED:0.28 eAED:0.28 QI:260|1|1|1|1|1|2|543|241; (*GB) gi|255577683|ref|XP_002529718.1| (e_value=5e-112) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35790.1 (e_value=2e-81) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:15040735-15041976 FORWARD LENGTH=238;; (*ITAG) Solyc05g056090.2.1 (e_value=1e-117) genomic_reference:SL2.40ch05 gene_region:64613030-64615907 transcript_region:SL2.40ch05:64613030..64615907+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009724 Protein of unknown function DUF1301 "; NbS00060776g0002.1 protein AED:0.04 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|228; (*ITAG) Solyc08g014090.1.1 (e_value=3e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:3628552-3629112 transcript_region:SL2.40ch08:3628552..3629112+ functional_description:"Unknown Protein (AHRD V1)"; NbC25480847g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|336169731|gb|AEI25530.1| (e_value=0.0) gibberellic acid insensitive protein [Solanum tuberosum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=0.0) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=9e-172) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00010612g0005.1 protein AED:0.05 eAED:0.05 QI:425|0.75|0.88|1|0.87|0.77|9|191|1031; (*GB) gi|255554200|ref|XP_002518140.1| (e_value=3e-153) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q55GU0|Y9955_DICDI (e_value=4e-34) Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1;; (*TAIR) AT1G04700.1 (e_value=8e-145) | Symbols: | PB1 domain-containing protein tyrosine kinase | chr1:1316919-1320653 FORWARD LENGTH=1042;; (*ITAG) Solyc09g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013033g0007.1 protein AED:0.03 eAED:0.11 QI:314|0.8|0.66|1|0|0|6|250|219; (*GB) gi|356529562|ref|XP_003533359.1| (e_value=2e-82) PREDICTED: uncharacterized protein LOC100803213 [Glycine max];; (*TAIR) AT1G73805.1 (e_value=2e-69) | Symbols: | Calmodulin binding protein-like | chr1:27745761-27749178 REVERSE LENGTH=451;; (*ITAG) Solyc12g036390.1.1 (e_value=3e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30933296-30936090 transcript_region:SL2.40ch12:30933296..30936090- functional_description:"Calmodulin-binding protein-like (AHRD V1 ***- Q943R3_ORYSJ); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; NbS00013033g0006.1 protein AED:0.17 eAED:0.17 QI:119|0.66|0.85|1|0.33|0.42|7|344|410; (*GB) gi|357521187|ref|XP_003630882.1| (e_value=2e-146) hypothetical protein MTR_8g104510 [Medicago truncatula];; (*TAIR) AT1G73805.1 (e_value=3e-112) | Symbols: | Calmodulin binding protein-like | chr1:27745761-27749178 REVERSE LENGTH=451;; (*ITAG) Solyc12g036390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30933296-30936090 transcript_region:SL2.40ch12:30933296..30936090- functional_description:"Calmodulin-binding protein-like (AHRD V1 ***- Q943R3_ORYSJ); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; NbS00043387g0006.1 protein AED:0.26 eAED:0.26 QI:212|0|0.5|1|0|0.5|2|0|401; (*GB) gi|1171997|sp|P45733.1|PAL3_TOBAC (e_value=0.0) RecName: Full=Phenylalanine ammonia-lyase;; (*SWP) sp|P45733|PAL3_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=0.0) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc10g086180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00043387g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|1171997|sp|P45733.1|PAL3_TOBAC (e_value=0.0) RecName: Full=Phenylalanine ammonia-lyase;; (*SWP) sp|P45733|PAL3_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=2e-153) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc10g086180.1.1 (e_value=5e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00043013g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|255574623|ref|XP_002528222.1| (e_value=3e-175) UDP-glucuronate 5-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9M0B6|GAE1_ARATH (e_value=6e-171) UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1;; (*TAIR) AT4G30440.1 (e_value=4e-172) | Symbols: GAE1 | UDP-D-glucuronate 4-epimerase 1 | chr4:14881976-14883265 REVERSE LENGTH=429;; (*ITAG) Solyc12g010540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3531522-3532820 transcript_region:SL2.40ch12:3531522..3532820- go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00033117g0001.1 protein AED:0.17 eAED:0.17 QI:347|1|1|1|0.5|0.33|3|53|149 NbS00039582g0003.1 protein AED:0.01 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|175; (*GB) gi|17367229|sp|Q9XH42.1|CET4_TOBAC (e_value=2e-124) RecName: Full=CEN-like protein 4;; (*SWP) sp|Q9XH42|CET4_TOBAC (e_value=5e-126) CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1;; (*TAIR) AT2G27550.1 (e_value=6e-100) | Symbols: ATC | centroradialis | chr2:11773417-11774509 FORWARD LENGTH=175;; (*ITAG) Solyc06g074350.2.1 (e_value=1e-119) genomic_reference:SL2.40ch06 gene_region:42361623-42363883 transcript_region:SL2.40ch06:42361623..42363883+ go_terms:GO:0005515,GO:0008429 functional_description:"self-pruning"; GO:0005515,GO:0008429 NbS00040176g0003.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-42) hypothetical protein [Nicotiana tabacum]; NbS00041056g0007.1 protein AED:0.18 eAED:0.18 QI:260|0.66|0.71|1|0.83|0.71|7|399|348; (*GB) gi|225464824|ref|XP_002270362.1| (e_value=2e-155) PREDICTED: dnaJ protein homolog [Vitis vinifera];; (*SWP) sp|P42824|DNJH2_ALLPO (e_value=8e-150) DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=2e-87) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc05g055160.2.1 (e_value=7e-107) genomic_reference:SL2.40ch05 gene_region:64069121-64073511 transcript_region:SL2.40ch05:64069121..64073511- go_terms:GO:0050750 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0050750 NbS00041056g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|111; (*ITAG) Solyc05g055150.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64066810-64068244 transcript_region:SL2.40ch05:64066810..64068244- functional_description:"UPF0497 membrane protein 17 (AHRD V1 --*- U497H_RICCO)"; NbS00041401g0007.1 protein AED:0.24 eAED:0.25 QI:0|0.25|0|1|0.25|0|5|0|377; (*GB) gi|356537122|ref|XP_003537079.1| (e_value=1e-177) PREDICTED: uncharacterized protein LOC100794408 [Glycine max];; (*TAIR) AT3G11570.1 (e_value=5e-151) | Symbols: TBL8 | TRICHOME BIREFRINGENCE-LIKE 8 | chr3:3645540-3647328 REVERSE LENGTH=427;; (*ITAG) Solyc09g065030.2.1 (e_value=1e-113) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00041401g0006.1 protein AED:0.66 eAED:0.66 QI:0|0.25|0|0.4|1|1|5|0|156; (*GB) gi|359482024|ref|XP_002276024.2| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100257992 [Vitis vinifera];; (*TAIR) AT5G06220.1 (e_value=5e-66) | Symbols: | LETM1-like protein | chr5:1880049-1885366 FORWARD LENGTH=832;; (*ITAG) Solyc09g010280.2.1 (e_value=2e-88) genomic_reference:SL2.40ch09 gene_region:3647431-3666876 transcript_region:SL2.40ch09:3647431..3666876- functional_description:"Os08g0482100 protein (Fragment) (AHRD V1 **-- Q0J4Y4_ORYSJ); contains Interpro domain(s) IPR011685 LETM1-like "; NbS00019839g0010.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0|0|3|0|243; (*GB) gi|255559687|ref|XP_002520863.1| (e_value=2e-110) Alpha-expansin 8 precursor, putative [Ricinus communis];; (*SWP) sp|O22874|EXPA8_ARATH (e_value=2e-105) Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1;; (*TAIR) AT2G40610.1 (e_value=2e-106) | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 | expansin A8 | chr2:16949121-16950472 REVERSE LENGTH=253;; (*ITAG) Solyc05g052250.2.1 (e_value=8e-116) genomic_reference:SL2.40ch05 gene_region:61664225-61667017 transcript_region:SL2.40ch05:61664225..61667017+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin 2 (AHRD V1 ***- C0LU46_CITSI); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00019839g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-22) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00019839g0006.1 protein AED:0.42 eAED:0.42 QI:83|0.25|0.4|0.6|0.75|0.6|5|0|74 NbS00019839g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|224146222|ref|XP_002325927.1| (e_value=1e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT3G56360.1 (e_value=5e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20896641-20897342 FORWARD LENGTH=233;; (*ITAG) Solyc06g049020.1.1 (e_value=4e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:28759229-28759888 transcript_region:SL2.40ch06:28759229..28759888- functional_description:"Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848 (AHRD V1 ***- C7IVU8_9POAL)"; NbS00003261g0107.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|0|0|5|0|342 NbS00011651g0005.1 protein AED:0.09 eAED:0.09 QI:415|0.88|0.8|1|0.88|0.8|10|196|647; (*GB) gi|225453883|ref|XP_002273090.1| (e_value=0.0) PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 2 [Vitis vinifera];; (*SWP) sp|Q9LDX3|UTR4_ARATH (e_value=0.0) UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1;; (*TAIR) AT1G12600.1 (e_value=0.0) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr1:4286414-4288859 REVERSE LENGTH=349;; (*ITAG) Solyc01g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77152790-77155787 transcript_region:SL2.40ch01:77152790..77155787+ go_terms:GO:0046964 functional_description:"3&apos-phosphoadenosine 5&apos-phosphosulfate transporter 1 (AHRD V1 **** B2BMP5_CANFA); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0046964 NbS00037128g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|0.66|3|0|672; (*GB) gi|77403667|dbj|BAE46412.1| (e_value=0.0) Pre-mRNA splicing factor [Solanum tuberosum];; (*TAIR) AT4G31200.1 (e_value=0.0) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650;; (*ITAG) Solyc10g083200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00008703g0009.1 protein AED:0.02 eAED:0.14 QI:0|0.5|0|1|0|0|3|0|302; (*GB) gi|321150024|gb|ADW66159.1| (e_value=3e-74) pistil-specific extensin-like protein [Solanum nigrum];; (*SWP) sp|Q03211|PEXLP_TOBAC (e_value=8e-26) Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G34700.1 (e_value=2e-32) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:14634298-14635597 REVERSE LENGTH=175;; (*ITAG) Solyc02g078040.2.1 (e_value=1e-74) genomic_reference:SL2.40ch02 gene_region:37435419-37436560 transcript_region:SL2.40ch02:37435419..37436560- go_terms:GO:0005199 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00008703g0006.1 protein AED:0.20 eAED:0.20 QI:3|0.87|0.77|1|0.75|0.77|9|376|304; (*GB) gi|356551466|ref|XP_003544096.1| (e_value=2e-94) PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Glycine max];; (*SWP) sp|Q9P775|YBEG_SCHPO (e_value=7e-41) Uncharacterized WD repeat-containing protein C17D11.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.16 PE=1 SV=1;; (*TAIR) AT4G18905.1 (e_value=2e-77) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:10360234-10362991 FORWARD LENGTH=494;; (*ITAG) Solyc04g005330.2.1 (e_value=6e-118) genomic_reference:SL2.40ch04 gene_region:241155-247975 transcript_region:SL2.40ch04:241155..247975- go_terms:GO:0005515 functional_description:"Periodic tryptophan protein 1 homolog (AHRD V1 **-- C1BVG9_9MAXI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00003753g0004.1 protein AED:0.28 eAED:0.28 QI:153|0.87|0.88|1|0.87|1|9|0|238; (*GB) gi|225433343|ref|XP_002285592.1| (e_value=5e-135) PREDICTED: uncharacterized protein all1601 [Vitis vinifera];; (*SWP) sp|Q8GS60|HCAR_ARATH (e_value=3e-131) 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Arabidopsis thaliana GN=HCAR PE=1 SV=1;; (*TAIR) AT1G04620.1 (e_value=2e-132) | Symbols: | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | chr1:1282869-1286492 REVERSE LENGTH=462;; (*ITAG) Solyc09g091100.2.1 (e_value=2e-152) genomic_reference:SL2.40ch09 gene_region:65800960-65811144 transcript_region:SL2.40ch09:65800960..65811144- go_terms:GO:0050454 functional_description:"Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like (AHRD V1 **** Q118A1_TRIEI); contains Interpro domain(s) IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal "; GO:0050454 NbS00055653g0001.1 protein AED:0.42 eAED:0.57 QI:0|0|0|1|1|1|3|0|212 NbS00005585g0002.1 protein AED:0.12 eAED:0.16 QI:0|0.87|0.66|1|1|1|9|0|375; (*GB) gi|349732085|ref|NP_001231830.1| (e_value=0.0) CLB1 [Solanum lycopersicum];; (*SWP) sp|Q5FWL4|EST2A_XENLA (e_value=2e-31) Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1;; (*TAIR) AT3G61050.2 (e_value=0.0) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc10g017590.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5471407-5476519 transcript_region:SL2.40ch10:5471407..5476519+ go_terms:GO:0008289 functional_description:"Syt1 synaptotagmin Ca2+-dependent lipid-binding protein putati (IC) (AHRD V1 *--* Q01EW7_OSTTA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00005585g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|1|1|4|0|461; (*GB) gi|225454079|ref|XP_002266316.1| (e_value=0.0) PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6DW73|DGDG2_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=0.0) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc10g017580.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5463304-5471231 transcript_region:SL2.40ch10:5463304..5471231+ go_terms:GO:0035250 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250 NbS00051456g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|1|1|4|0|775; (*GB) gi|224123648|ref|XP_002330173.1| (e_value=4e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32120.1 (e_value=2e-17) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc09g009160.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2493689-2496994 transcript_region:SL2.40ch09:2493689..2496994+ functional_description:"Aminotransferase-like (AHRD V1 *-*- Q5JJS3_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00006835g0002.1 protein AED:0.28 eAED:0.28 QI:194|1|0.66|1|1|1|3|0|76; (*ITAG) Solyc05g051740.2.1 (e_value=6e-15) genomic_reference:SL2.40ch05 gene_region:61274070-61275347 transcript_region:SL2.40ch05:61274070..61275347- functional_description:"Unknown Protein (AHRD V1)"; NbS00040355g0005.1 protein AED:0.23 eAED:0.23 QI:242|0.75|0.66|1|0.62|0.77|9|0|454; (*GB) gi|225446797|ref|XP_002283267.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254120 [Vitis vinifera];; (*TAIR) AT2G30880.1 (e_value=2e-165) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr2:13142926-13145718 REVERSE LENGTH=504;; (*ITAG) Solyc05g021100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:26349656-26356402 transcript_region:SL2.40ch05:26349656..26356402- go_terms:GO:0035091 functional_description:"PH domain containing protein (AHRD V1 **-- B6UFM0_MAIZE)"; GO:0035091 NbS00036505g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.5|4|0|439; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=0.0) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=5e-164) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc03g058890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:23968073-23970799 transcript_region:SL2.40ch03:23968073..23970799+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LQ55_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00033533g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|200; (*GB) gi|297735265|emb|CBI17627.3| (e_value=9e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=9e-26) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=2e-33) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc10g054760.1.1 (e_value=6e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00055574g0003.1 protein AED:0.13 eAED:0.13 QI:633|1|1|1|1|1|8|446|519; (*GB) gi|255547081|ref|XP_002514598.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=8e-85) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G15740.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc03g114730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58687413-58692533 transcript_region:SL2.40ch03:58687413..58692533- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00012018g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|170; (*ITAG) Solyc04g074680.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:58193868-58194365 transcript_region:SL2.40ch04:58193868..58194365- functional_description:"Unknown Protein (AHRD V1)"; NbS00012018g0003.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0|0|2|0|68 NbS00012018g0105.1 protein AED:0.36 eAED:0.36 QI:44|1|1|1|0.66|0.5|4|650|94 NbS00004661g0007.1 protein AED:0.20 eAED:0.38 QI:0|0|0|1|0.25|0.4|5|0|202; (*ITAG) Solyc01g073870.2.1 (e_value=6e-76) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00006458g0003.1 protein AED:0.07 eAED:0.07 QI:12|0.33|0.25|1|0.66|0.5|4|0|500; (*GB) gi|17402471|emb|CAD13178.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00000274g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.85|0.5|1|1|1|8|0|501; (*GB) gi|255570505|ref|XP_002526210.1| (e_value=1e-171) RNA polymerase II ctd phosphatase, putative [Ricinus communis];; (*SWP) sp|Q00IB6|CPL4_ARATH (e_value=2e-146) RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1;; (*TAIR) AT5G58003.1 (e_value=1e-147) | Symbols: CPL4 | C-terminal domain phosphatase-like 4 | chr5:23480066-23481924 FORWARD LENGTH=440;; (*ITAG) Solyc07g005450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:356410-364419 transcript_region:SL2.40ch07:356410..364419- go_terms:GO:0008022 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 4 (AHRD V1 ***- CPL4_ARATH); contains Interpro domain(s) IPR011947 FCP1-like phosphatase, phosphatase domain "; GO:0008022 NbS00051130g0002.1 protein AED:0.06 eAED:0.06 QI:43|1|0.5|1|1|1|2|0|190; (*GB) gi|224100841|ref|XP_002312035.1| (e_value=2e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQR0|LBD1_ARATH (e_value=1e-67) LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1;; (*TAIR) AT1G07900.1 (e_value=8e-69) | Symbols: LBD1 | LOB domain-containing protein 1 | chr1:2442624-2443631 FORWARD LENGTH=190;; (*ITAG) Solyc04g050010.1.1 (e_value=2e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:44250557-44252085 transcript_region:SL2.40ch04:44250557..44252085+ go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00054955g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0.3|0.7|0.44|0.4|10|0|296; (*GB) gi|356558882|ref|XP_003547731.1| (e_value=6e-65) PREDICTED: protein notum homolog [Glycine max];; (*TAIR) AT4G19410.2 (e_value=7e-54) | Symbols: | Pectinacetylesterase family protein | chr4:10581037-10584766 REVERSE LENGTH=517;; (*ITAG) Solyc03g078260.2.1 (e_value=4e-121) genomic_reference:SL2.40ch03 gene_region:43808497-43812309 transcript_region:SL2.40ch03:43808497..43812309+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00037079g0003.1 protein AED:0.00 eAED:0.00 QI:155|1|1|1|0.66|0.75|4|137|430; (*GB) gi|255538530|ref|XP_002510330.1| (e_value=2e-51) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-39) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=9e-41) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=9e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00049629g0005.1 protein AED:0.75 eAED:0.75 QI:68|0|0.33|0.33|1|1|3|0|174; (*GB) gi|302143305|emb|CBI21866.3| (e_value=6e-81) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04904|PYRC_ARATH (e_value=3e-69) Dihydroorotase, mitochondrial OS=Arabidopsis thaliana GN=PYR4 PE=2 SV=1;; (*TAIR) AT4G22930.1 (e_value=2e-70) | Symbols: PYR4, DHOASE | pyrimidin 4 | chr4:12019315-12021200 FORWARD LENGTH=377; NbS00049629g0007.1 protein AED:0.35 eAED:0.36 QI:186|0.42|0.62|0.87|0.42|0.37|8|322|422; (*GB) gi|298201213|gb|ADI60302.1| (e_value=8e-71) ER luminal protein receptor 2a [Nicotiana benthamiana];; (*SWP) sp|P35402|ERD2_ARATH (e_value=2e-53) ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1;; (*TAIR) AT1G29330.1 (e_value=2e-54) | Symbols: ATERD2, AERD2, ERD2 | ER lumen protein retaining receptor family protein | chr1:10258580-10260906 REVERSE LENGTH=215;; (*ITAG) Solyc02g072120.2.1 (e_value=2e-70) genomic_reference:SL2.40ch02 gene_region:35976352-35983439 transcript_region:SL2.40ch02:35976352..35983439- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor (AHRD V1 ***- D7PF43_NICBE); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00023490g0103.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|63 NbS00041980g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|225438454|ref|XP_002277336.1| (e_value=9e-71) PREDICTED: uncharacterized protein LOC100242269 isoform 2 [Vitis vinifera];; (*ITAG) Solyc02g082570.1.1 (e_value=5e-151) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:40814597-40815712 transcript_region:SL2.40ch02:40814597..40815712+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017924g0016.1 protein AED:0.16 eAED:0.19 QI:0|0|0|0.75|1|1|4|0|526; (*GB) gi|54261824|gb|AAV31174.1| (e_value=1e-135) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=3e-20) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-21) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g015210.2.1 (e_value=4e-94) genomic_reference:SL2.40ch04 gene_region:5390900-5396168 transcript_region:SL2.40ch04:5390900..5396168- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00017924g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0.2|1|1|1|5|0|530; (*GB) gi|296090005|emb|CBI39824.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-130) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=0.0) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017924g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|4|0|504; (*GB) gi|224089501|ref|XP_002308735.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08050.1 (e_value=2e-40) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr1:2499088-2501311 REVERSE LENGTH=641;; (*ITAG) Solyc04g015280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5484893-5488972 transcript_region:SL2.40ch04:5484893..5488972+ go_terms:GO:0008270 functional_description:"Zinc finger RING-type (AHRD V1 **-- A2Q5E8_MEDTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017924g0003.1 protein AED:0.19 eAED:0.21 QI:232|0.81|0.66|1|0.90|0.91|12|0|676; (*GB) gi|296080851|emb|CBI18781.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93ZX7|GAUT4_ARATH (e_value=0.0) Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1;; (*TAIR) AT5G47780.1 (e_value=0.0) | Symbols: GAUT4 | galacturonosyltransferase 4 | chr5:19347991-19350517 FORWARD LENGTH=616;; (*ITAG) Solyc04g015270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5473221-5478626 transcript_region:SL2.40ch04:5473221..5478626+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00017924g0020.1 protein AED:0.31 eAED:0.31 QI:0|1|0.83|1|1|1|6|269|316; (*GB) gi|357448183|ref|XP_003594367.1| (e_value=2e-127) Myb family transcription factor [Medicago truncatula];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=6e-47) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G13640.1 (e_value=6e-67) | Symbols: UNE16 | Homeodomain-like superfamily protein | chr4:7936864-7938497 REVERSE LENGTH=292;; (*ITAG) Solyc04g015290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5491465-5497320 transcript_region:SL2.40ch04:5491465..5497320+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00012470g0003.1 protein AED:0.01 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|305; (*GB) gi|224133072|ref|XP_002321475.1| (e_value=9e-109) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=1e-76) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT3G18400.1 (e_value=1e-93) | Symbols: anac058, NAC058 | NAC domain containing protein 58 | chr3:6318745-6320593 REVERSE LENGTH=314;; (*ITAG) Solyc12g036480.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31380780-31383643 transcript_region:SL2.40ch12:31380780..31383643- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00012959g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|6|0|536; (*GB) gi|224055825|ref|XP_002298672.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23264|SEBP1_ARATH (e_value=0.0) Selenium-binding protein 1 OS=Arabidopsis thaliana GN=SBP1 PE=1 SV=1;; (*TAIR) AT4G14030.2 (e_value=0.0) | Symbols: SBP1 | selenium-binding protein 1 | chr4:8098121-8100165 REVERSE LENGTH=490;; (*ITAG) Solyc09g092430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66876196-66880227 transcript_region:SL2.40ch09:66876196..66880227+ go_terms:GO:0008430 functional_description:"Selenium binding protein (AHRD V1 **** Q93WS1_MEDSA); contains Interpro domain(s) IPR008826 Selenium-binding protein "; GO:0008430 NbS00012122g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|1|0.66|0.5|4|0|639; (*GB) gi|224075052|ref|XP_002304537.1| (e_value=7e-178) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9SUQ7|CHX17_ARATH (e_value=2e-170) Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1;; (*TAIR) AT4G23700.1 (e_value=1e-171) | Symbols: ATCHX17, CHX17 | cation/H+ exchanger 17 | chr4:12342534-12345616 REVERSE LENGTH=820;; (*ITAG) Solyc02g071070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35142603-35146386 transcript_region:SL2.40ch02:35142603..35146386+ go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00008385g0005.1 protein AED:0.04 eAED:0.06 QI:0|1|0.85|1|0.83|0.71|7|1719|664; (*GB) gi|359496573|ref|XP_002271439.2| (e_value=4e-158) PREDICTED: uncharacterized protein LOC100241484 [Vitis vinifera];; (*TAIR) AT1G11480.1 (e_value=4e-45) | Symbols: | eukaryotic translation initiation factor-related | chr1:3864368-3866750 REVERSE LENGTH=578;; (*ITAG) Solyc02g079880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38853992-38859262 transcript_region:SL2.40ch02:38853992..38859262- functional_description:"Translation initiation factor-related (AHRD V1 ***- D3YBD7_TRIRP)"; NbS00024414g0005.1 protein AED:0.22 eAED:0.23 QI:561|0.82|0.77|1|0.88|0.88|18|0|1468; (*GB) gi|334302903|sp|Q9FLQ7.3|FH20_ARATH (e_value=0.0) RecName: Full=Formin-like protein 20; Short=AtFH20;; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=0.0) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=0.0) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc03g115670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59365407-59367477 transcript_region:SL2.40ch03:59365407..59367477+ functional_description:"Formin 2B (AHRD V1 ***- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00049613g0001.1 protein AED:0.28 eAED:0.33 QI:0|0|0|1|0|0|4|0|354; (*GB) gi|225423891|ref|XP_002281658.1| (e_value=1e-154) PREDICTED: probable galacturonosyltransferase-like 3 [Vitis vinifera];; (*SWP) sp|Q0V7R1|GATL3_ARATH (e_value=1e-144) Probable galacturonosyltransferase-like 3 OS=Arabidopsis thaliana GN=GATL3 PE=2 SV=1;; (*TAIR) AT1G13250.1 (e_value=9e-146) | Symbols: GATL3 | galacturonosyltransferase-like 3 | chr1:4528965-4530002 REVERSE LENGTH=345;; (*ITAG) Solyc05g009820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4035740-4037317 transcript_region:SL2.40ch05:4035740..4037317+ go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00029201g0002.1 protein AED:0.07 eAED:0.13 QI:0|0|0|1|1|1|2|0|404; (*GB) gi|225442902|ref|XP_002263600.1| (e_value=1e-160) PREDICTED: uncharacterized protein LOC100266426 [Vitis vinifera];; (*TAIR) AT1G52530.1 (e_value=6e-141) | Symbols: | CONTAINS InterPro DOMAIN/s: Hus1-like protein (InterPro:IPR007150); Has 129 Blast hits to 128 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:19569045-19570004 FORWARD LENGTH=319;; (*ITAG) Solyc03g117530.1.1 (e_value=2e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60714421-60715329 transcript_region:SL2.40ch03:60714421..60715329+ functional_description:"Checkpoint protein HUS1 (AHRD V1 ***- HUS1_HUMAN); contains Interpro domain(s) IPR007150 Hus1-like protein "; NbS00027691g0003.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|1|1|3|0|92 NbS00027691g0008.1 protein AED:0.16 eAED:0.18 QI:0|1|0.5|1|1|1|4|0|383; (*GB) gi|255580762|ref|XP_002531202.1| (e_value=3e-88) Protein C6orf55, putative [Ricinus communis];; (*SWP) sp|Q55B11|VTA1_DICDI (e_value=1e-13) Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1;; (*TAIR) AT4G26750.1 (e_value=5e-40) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475848-13478382 REVERSE LENGTH=421;; (*ITAG) Solyc07g064980.2.1 (e_value=2e-114) genomic_reference:SL2.40ch07 gene_region:64146302-64151201 transcript_region:SL2.40ch07:64146302..64151201+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein VTA1 homolog (AHRD V1 *--- C1C2K6_9MAXI); contains Interpro domain(s) IPR006745 Protein of unknown function DUF605 "; GO:0005515 NbS00029838g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|1|0.5|0.4|5|0|824; (*GB) gi|255550512|ref|XP_002516306.1| (e_value=0.0) Na(+)/H(+) antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=0.0) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=0.0) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g060630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35049005-35051647 transcript_region:SL2.40ch06:35049005..35051647+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00024619g0008.1 protein AED:0.22 eAED:0.22 QI:332|0.7|0.63|0.90|0.7|0.63|11|0|478; (*GB) gi|147827159|emb|CAN66469.1| (e_value=0.0) hypothetical protein VITISV_016566 [Vitis vinifera];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=1e-98) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT4G05020.1 (e_value=0.0) | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2572752-2576222 FORWARD LENGTH=582;; (*ITAG) Solyc02g079170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38360060-38365669 transcript_region:SL2.40ch02:38360060..38365669+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00024619g0007.1 protein AED:0.01 eAED:0.04 QI:0|1|0|1|1|0.5|2|0|481; (*GB) gi|125526501|gb|EAY74615.1| (e_value=2e-28) hypothetical protein OsI_02503 [Oryza sativa Indica Group];; (*SWP) sp|Q657C0|HFA6B_ORYSJ (e_value=6e-30) Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1;; (*TAIR) AT5G03720.1 (e_value=1e-26) | Symbols: AT-HSFA3, HSFA3 | heat shock transcription factor A3 | chr5:971913-973683 REVERSE LENGTH=412;; (*ITAG) Solyc02g079180.1.1 (e_value=3e-129) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38366347-38367682 transcript_region:SL2.40ch02:38366347..38367682- go_terms:GO:0005634 functional_description:"Heat shock transcription factor 1 (AHRD V1 *-*- Q008S1_MEDSA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00033335g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|342; (*GB) gi|224122524|ref|XP_002318858.1| (e_value=8e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLI3|P2C75_ARATH (e_value=1e-86) Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1;; (*TAIR) AT5G51760.1 (e_value=9e-88) | Symbols: AHG1 | Protein phosphatase 2C family protein | chr5:21026916-21028912 FORWARD LENGTH=416;; (*ITAG) Solyc03g006960.2.1 (e_value=5e-120) genomic_reference:SL2.40ch03 gene_region:1520013-1522985 transcript_region:SL2.40ch03:1520013..1522985- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00015824g0004.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|0|1|2|0|70 NbS00009417g0015.1 protein AED:0.21 eAED:0.29 QI:6|0.75|0.4|1|0|0|5|0|193; (*GB) gi|255556850|ref|XP_002519458.1| (e_value=1e-58) carbonic anhydrase, putative [Ricinus communis];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=7e-45) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT1G08080.1 (e_value=1e-50) | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase 7 | chr1:2517022-2518546 REVERSE LENGTH=275;; (*ITAG) Solyc09g008420.2.1 (e_value=3e-72) genomic_reference:SL2.40ch09 gene_region:1871903-1876525 transcript_region:SL2.40ch09:1871903..1876525+ go_terms:GO:0004089 functional_description:"Carbonic anhydrase (Carbonate dehydratase) (AHRD V1 **** C1DTU5_SULAA); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0004089 NbS00009417g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.71|0.75|0.87|0.71|0.75|8|403|332; (*GB) gi|147859341|emb|CAN81849.1| (e_value=1e-99) hypothetical protein VITISV_036820 [Vitis vinifera];; (*SWP) sp|Q6DRB1|GLE1_DANRE (e_value=5e-24) Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2;; (*TAIR) AT1G13120.1 (e_value=2e-59) | Symbols: | | chr1:4469334-4472775 REVERSE LENGTH=611;; (*ITAG) Solyc05g013790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7100783-7110858 transcript_region:SL2.40ch05:7100783..7110858- go_terms:GO:0005643 functional_description:"Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like "; GO:0005643 NbS00009417g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.25|0|0.8|0.5|0.8|5|0|216; (*GB) gi|225441155|ref|XP_002267788.1| (e_value=5e-96) PREDICTED: aquaporin TIP1-1 [Vitis vinifera];; (*SWP) sp|P25818|TIP11_ARATH (e_value=6e-95) Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1;; (*TAIR) AT2G36830.1 (e_value=4e-96) | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251;; (*ITAG) Solyc10g083880.1.1 (e_value=1e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62931204-62932616 transcript_region:SL2.40ch10:62931204..62932616+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00009417g0008.1 protein AED:0.20 eAED:0.20 QI:186|0.84|0.85|1|0.15|0.21|14|1060|312; (*GB) gi|4105798|gb|AAD02556.1| (e_value=2e-166) PGPD14 [Petunia x hybrida];; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=3e-62) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT5G22920.1 (e_value=6e-134) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:7665143-7667031 FORWARD LENGTH=291;; (*ITAG) Solyc09g008430.2.1 (e_value=3e-174) genomic_reference:SL2.40ch09 gene_region:1876963-1881169 transcript_region:SL2.40ch09:1876963..1881169- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q10RT9_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00024901g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.2|1|0.5|0.6|5|0|288; (*GB) gi|163838594|dbj|BAF95776.1| (e_value=2e-116) class 2 knotted1-like protein [Nicotiana tabacum];; (*SWP) sp|O22300|LET12_SOLLC (e_value=4e-114) Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1;; (*TAIR) AT5G11060.1 (e_value=5e-107) | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | chr5:3510408-3512967 FORWARD LENGTH=393;; (*ITAG) Solyc12g010410.1.1 (e_value=5e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3455837-3459360 transcript_region:SL2.40ch12:3455837..3459360+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634,GO:0006355,GO:0045449 NbS00039090g0001.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.25|1|1|4|0|66 NbS00059099g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|225463766|ref|XP_002267930.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=0.0) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT3G20015.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6978746-6980158 REVERSE LENGTH=470;; (*ITAG) Solyc04g008850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2469802-2471241 transcript_region:SL2.40ch04:2469802..2471241- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA97_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00010275g0012.1 protein AED:0.41 eAED:0.49 QI:0|0.66|0.5|1|0.66|0.5|4|0|121; (*GB) gi|46102537|gb|AAS80319.1| (e_value=3e-72) thioredoxin protein [Nicotiana benthamiana];; (*SWP) sp|Q9M7X9|CITRX_ARATH (e_value=1e-50) Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=At3g06730 PE=1 SV=1;; (*TAIR) AT3G06730.1 (e_value=9e-52) | Symbols: TRX P, TRX z | Thioredoxin z | chr3:2124276-2125845 FORWARD LENGTH=183;; (*ITAG) Solyc01g096480.2.1 (e_value=3e-60) genomic_reference:SL2.40ch01 gene_region:79321007-79324434 transcript_region:SL2.40ch01:79321007..79324434+ go_terms:GO:0045454 functional_description:"Thioredoxin protein (AHRD V1 ***- Q6JE37_NICBE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00010275g0011.1 protein AED:0.16 eAED:0.15 QI:0|0.78|0.6|1|0.78|0.66|15|0|1380; (*GB) gi|186522588|ref|NP_196857.2| (e_value=0.0) E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana];; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=0.0) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT5G13530.1 (e_value=0.0) | Symbols: KEG | protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1625;; (*ITAG) Solyc01g096490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79324784-79340957 transcript_region:SL2.40ch01:79324784..79340957- go_terms:GO:0005515,GO:0004842 functional_description:"Kinase family protein (AHRD V1 *--- D7MA69_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0004842 NbS00024842g0002.1 protein AED:0.01 eAED:0.02 QI:434|0|0.5|1|0|0.5|2|309|268; (*GB) gi|225424168|ref|XP_002284079.1| (e_value=4e-139) PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera];; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=3e-119) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1;; (*TAIR) AT1G71100.1 (e_value=1e-121) | Symbols: RSW10 | Ribose 5-phosphate isomerase, type A protein | chr1:26814726-26815529 FORWARD LENGTH=267;; (*ITAG) Solyc05g008370.1.1 (e_value=3e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2732607-2733413 transcript_region:SL2.40ch05:2732607..2733413+ go_terms:GO:0004751 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 **** A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0004751 NbS00024842g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.14|1|1|7|0|305; (*ITAG) Solyc01g066930.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00024842g0009.1 protein AED:0.20 eAED:0.30 QI:0|0|0|1|0|0|2|0|186; (*GB) gi|2916727|emb|CAA73103.1| (e_value=1e-52) polyphenol oxidase [Nicotiana tabacum];; (*SWP) sp|Q08306|PPOD_SOLLC (e_value=7e-51) Polyphenol oxidase D, chloroplastic OS=Solanum lycopersicum PE=3 SV=2;; (*ITAG) Solyc08g074680.2.1 (e_value=1e-50) genomic_reference:SL2.40ch08 gene_region:55995940-56008590 transcript_region:SL2.40ch08:55995940..56008590- go_terms:GO:0008152 functional_description:"Polyphenol oxidase (AHRD V1 *-*- Q41428_SOLTU); contains Interpro domain(s) IPR002227 Tyrosinase "; GO:0008152 NbS00024842g0007.1 protein AED:0.54 eAED:0.54 QI:0|-1|0|1|-1|0|1|0|89; (*GB) gi|1172580|sp|Q08305.1|PPOC_SOLLC (e_value=5e-23) RecName: Full=Polyphenol oxidase C, chloroplastic; Short=PPO; AltName: Full=Catechol oxidase; Flags: Precursor;; (*SWP) sp|Q08305|PPOC_SOLLC (e_value=1e-24) Polyphenol oxidase C, chloroplastic OS=Solanum lycopersicum PE=3 SV=1;; (*ITAG) Solyc08g074640.1.1 (e_value=3e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55936853-55940676 transcript_region:SL2.40ch08:55936853..55940676+ go_terms:GO:0008152 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR002227 Tyrosinase "; GO:0008152 NbS00052183g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|1|1|3|37|260; (*GB) gi|255569391|ref|XP_002525663.1| (e_value=1e-124) tonoplast intrinsic protein, putative [Ricinus communis];; (*SWP) sp|O22588|TIP32_ARATH (e_value=2e-120) Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1;; (*TAIR) AT1G17810.1 (e_value=2e-121) | Symbols: BETA-TIP | beta-tonoplast intrinsic protein | chr1:6130209-6131442 FORWARD LENGTH=267;; (*ITAG) Solyc03g019820.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:6736503-6737841 transcript_region:SL2.40ch03:6736503..6737841- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00052183g0015.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|583; (*GB) gi|224116506|ref|XP_002331914.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHK7|Y5516_ARATH (e_value=8e-77) Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1;; (*TAIR) AT5G05160.1 (e_value=6e-78) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:1528000-1530017 FORWARD LENGTH=640;; (*ITAG) Solyc03g019830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6738921-6741895 transcript_region:SL2.40ch03:6738921..6741895- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00052183g0014.1 protein AED:0.34 eAED:0.34 QI:565|0.8|0.83|1|0.4|0.33|6|290|246; (*GB) gi|297737192|emb|CBI26393.3| (e_value=4e-130) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g019810.2.1 (e_value=1e-168) genomic_reference:SL2.40ch03 gene_region:6732732-6736409 transcript_region:SL2.40ch03:6732732..6736409+ functional_description:"Metallophosphoesterase (AHRD V1 **-- C5AIN9_BURGB)"; NbS00060688g0005.1 protein AED:0.10 eAED:0.10 QI:184|0.83|0.71|1|0.66|0.57|7|353|264; (*GB) gi|1172556|sp|P42056.2|VDAC2_SOLTU (e_value=3e-171) RecName: Full=Mitochondrial outer membrane protein porin of 36 kDa; AltName: Full=POM 36; AltName: Full=Voltage-dependent anion-selective channel protein; Short=VDAC;; (*SWP) sp|P42056|VDAC2_SOLTU (e_value=8e-173) Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=9e-133) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc01g010760.2.1 (e_value=2e-172) genomic_reference:SL2.40ch01 gene_region:5821504-5825600 transcript_region:SL2.40ch01:5821504..5825600+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00024232g0006.1 protein AED:0.27 eAED:0.27 QI:1121|0.92|0.86|1|0.89|0.86|29|247|686; (*GB) gi|255542920|ref|XP_002512523.1| (e_value=0.0) 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis];; (*SWP) sp|A4IF69|NHLC2_BOVIN (e_value=3e-137) NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1;; (*TAIR) AT1G56500.1 (e_value=0.0) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055;; (*ITAG) Solyc01g100650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82378816-82399452 transcript_region:SL2.40ch01:82378816..82399452+ go_terms:GO:0016787,GO:0008152,GO:0016491,GO:0045454 functional_description:"NHL repeat containing 2 (AHRD V1 *--- B2RR26_MOUSE); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; GO:0016787,GO:0008152,GO:0016491,GO:0045454 NbS00039592g0002.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.75|1|1|4|0|186; (*ITAG) Solyc01g006380.2.1 (e_value=5e-20) genomic_reference:SL2.40ch01 gene_region:1012883-1014486 transcript_region:SL2.40ch01:1012883..1014486+ functional_description:"U-box domain-containing protein (AHRD V1 ***- B6V8G2_HELAN)"; NbS00039592g0006.1 protein AED:0.43 eAED:0.58 QI:0|0|0|1|0|0|3|0|87 NbS00005984g0012.1 protein AED:0.28 eAED:0.32 QI:275|1|0.5|1|1|1|2|188|68 NbS00005984g0014.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|0.66|3|0|129; (*GB) gi|77416979|gb|ABA81885.1| (e_value=2e-78) profilin-like [Solanum tuberosum];; (*SWP) sp|Q93YI9|PROF_CAPAN (e_value=4e-77) Profilin OS=Capsicum annuum PE=1 SV=1;; (*TAIR) AT2G19760.1 (e_value=6e-67) | Symbols: PFN1, PRF1 | profilin 1 | chr2:8517074-8518067 REVERSE LENGTH=131;; (*ITAG) Solyc11g070130.1.1 (e_value=4e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51738809-51741342 transcript_region:SL2.40ch11:51738809..51741342+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q8VWR0_SOLLC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00005984g0004.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|115432146|gb|ABI97350.1| (e_value=2e-44) cold-induced wall associated kinase, partial [Ammopiptanthus mongolicus];; (*SWP) sp|Q9C9L5|WAKLH_ARATH (e_value=2e-38) Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1;; (*TAIR) AT1G69730.1 (e_value=1e-39) | Symbols: | Wall-associated kinase family protein | chr1:26228703-26231339 REVERSE LENGTH=792;; (*ITAG) Solyc09g014720.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6773605-6777110 transcript_region:SL2.40ch09:6773605..6777110- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00005984g0013.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|221; (*GB) gi|255550974|ref|XP_002516535.1| (e_value=5e-50) Phosphatase yidA, putative [Ricinus communis];; (*SWP) sp|P0A8Y7|YIDA_SHIFL (e_value=1e-13) Phosphatase YidA OS=Shigella flexneri GN=yidA PE=3 SV=1;; (*TAIR) AT2G25870.1 (e_value=3e-52) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr2:11031159-11034302 FORWARD LENGTH=584;; (*ITAG) Solyc08g066180.2.1 (e_value=3e-57) genomic_reference:SL2.40ch08 gene_region:51785433-51796832 transcript_region:SL2.40ch08:51785433..51796832- go_terms:GO:0016020,GO:0008152,GO:0008270 functional_description:"HMP-PP phosphatase (AHRD V1 *--- COF_CITK8); contains Interpro domain(s) IPR013200 HAD superfamily hydrolase-like, type 3 "; GO:0016020,GO:0008152,GO:0008270 NbS00040259g0001.1 protein AED:0.14 eAED:0.20 QI:0|0.83|0.85|1|0.83|0.71|7|541|183; (*GB) gi|224068522|ref|XP_002326138.1| (e_value=8e-61) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g042280.2.1 (e_value=1e-65) genomic_reference:SL2.40ch07 gene_region:52735104-52737234 transcript_region:SL2.40ch07:52735104..52737234+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017625g0205.1 protein AED:0.18 eAED:0.18 QI:248|0.92|0.92|1|1|1|14|234|513 NbS00017625g0312.1 protein AED:0.32 eAED:0.33 QI:0|0.25|0|1|0|0.4|5|0|369 NbS00017625g0311.1 protein AED:0.27 eAED:0.27 QI:700|1|0.9|1|0.77|0.9|10|0|566 NbS00009990g0010.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.66|1|0.4|0.33|6|375|360; (*GB) gi|225446869|ref|XP_002283859.1| (e_value=6e-124) PREDICTED: uncharacterized protein LOC100252338 [Vitis vinifera];; (*TAIR) AT3G58830.1 (e_value=1e-98) | Symbols: | haloacid dehalogenase (HAD) superfamily protein | chr3:21755172-21756637 REVERSE LENGTH=343;; (*ITAG) Solyc12g011020.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3877790-3880867 transcript_region:SL2.40ch12:3877790..3880867- functional_description:"Had superfamily (Subfamily iiia) phosphatase (AHRD V1 *-*- B5YDI1_DICT6); contains Interpro domain(s) IPR010021 HAD-superfamily phosphatase, subfamily IIIA "; NbS00009990g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|0.66|1|1|3|6|303; (*GB) gi|255558718|ref|XP_002520383.1| (e_value=1e-54) copper ion binding protein, putative [Ricinus communis];; (*TAIR) AT2G42840.1 (e_value=2e-48) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306;; (*ITAG) Solyc12g011010.1.1 (e_value=7e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3870609-3872065 transcript_region:SL2.40ch12:3870609..3872065- functional_description:"Meiosis 5 (AHRD V1 *-*- B6T5X0_MAIZE)"; NbS00028641g0013.1 protein AED:0.43 eAED:0.43 QI:0|0.75|0.4|0.8|0.75|1|5|0|448; (*GB) gi|225425176|ref|XP_002265076.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=0.0) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G13160.1 (e_value=0.0) | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176854-4179682 FORWARD LENGTH=456;; (*ITAG) Solyc05g024290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00028641g0014.1 protein AED:0.07 eAED:0.07 QI:159|0.8|0.66|1|0.4|0.33|6|125|285; (*GB) gi|358248850|ref|NP_001239695.1| (e_value=6e-74) uncharacterized protein LOC100777741 [Glycine max];; (*SWP) sp|P93332|NOD3_MEDTR (e_value=2e-69) Bidirectional sugar transporter N3 OS=Medicago truncatula GN=N3 PE=2 SV=1;; (*TAIR) AT5G13170.1 (e_value=2e-63) | Symbols: SAG29, SWEET15, AtSWEET15 | senescence-associated gene 29 | chr5:4181331-4183171 REVERSE LENGTH=292;; (*ITAG) Solyc05g024260.2.1 (e_value=2e-131) genomic_reference:SL2.40ch05 gene_region:30963570-30966033 transcript_region:SL2.40ch05:30963570..30966033+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00009123g0202.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|1|1|3|0|123 NbS00009123g0206.1 protein AED:0.43 eAED:0.63 QI:0|0|0.33|0.66|0|0|3|156|83 NbS00006591g0002.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.25|1|1|1|4|0|1936; (*GB) gi|296087607|emb|CBI34863.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P11654|PO210_RAT (e_value=1e-54) Nuclear pore membrane glycoprotein 210 OS=Rattus norvegicus GN=Pom210 PE=1 SV=1;; (*TAIR) AT5G40480.1 (e_value=0.0) | Symbols: EMB3012 | embryo defective 3012 | chr5:16213361-16223982 FORWARD LENGTH=1923;; (*ITAG) Solyc02g070810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34985924-34993977 transcript_region:SL2.40ch02:34985924..34993977- go_terms:GO:0032259,GO:0006810 functional_description:"Nuclear pore membrane glycoprotein 210 (AHRD V1 ***- PO210_HUMAN); contains Interpro domain(s) IPR008964 Invasin/intimin cell-adhesion "; GO:0032259,GO:0006810 NbS00006591g0010.1 protein AED:0.03 eAED:0.03 QI:0|0.85|0.87|1|0.71|0.75|8|0|252; (*GB) gi|255557357|ref|XP_002519709.1| (e_value=4e-124) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q1XDB4|YCF23_PORYE (e_value=3e-44) Uncharacterized protein ycf23 OS=Porphyra yezoensis GN=ycf23 PE=3 SV=1;; (*ITAG) Solyc02g070800.2.1 (e_value=9e-132) genomic_reference:SL2.40ch02 gene_region:34982396-34985095 transcript_region:SL2.40ch02:34982396..34985095- functional_description:"Ycf23 protein (AHRD V1 ***- Q7NE74_GLOVI); contains Interpro domain(s) IPR007570 Protein of unknown function DUF561 "; NbS00006591g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|12003398|gb|AAG43556.1|AF211538_1 (e_value=1e-33) Avr9/Cf-9 rapidly elicited protein 180 [Nicotiana tabacum];; (*ITAG) Solyc02g070820.1.1 (e_value=4e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35001212-35001535 transcript_region:SL2.40ch02:35001212..35001535- functional_description:"Avr9/Cf-9 rapidly elicited protein 180 (AHRD V1 ***- Q9FQZ1_TOBAC)"; NbS00003619g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|0.88|0.9|10|478|306; (*GB) gi|225448755|ref|XP_002281575.1| (e_value=1e-124) PREDICTED: protein IN2-1 homolog B-like [Vitis vinifera];; (*SWP) sp|Q9LZ06|GSTL3_ARATH (e_value=2e-108) Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1;; (*TAIR) AT5G02790.1 (e_value=1e-109) | Symbols: GSTL3 | Glutathione S-transferase family protein | chr5:632877-634858 FORWARD LENGTH=235;; (*ITAG) Solyc09g007150.2.1 (e_value=8e-146) genomic_reference:SL2.40ch09 gene_region:775043-778675 transcript_region:SL2.40ch09:775043..778675+ go_terms:GO:0045174 functional_description:"Glutathione S-transferase (AHRD V1 **** Q76KW1_PEA); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0045174 NbS00003619g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.73|0.94|0.77|0.73|19|0|764; (*GB) gi|225439783|ref|XP_002273633.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248309 [Vitis vinifera];; (*SWP) sp|P53258|GYP2_YEAST (e_value=1e-38) GTPase-activating protein GYP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDR1 PE=1 SV=1;; (*TAIR) AT2G37290.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:15656935-15661335 REVERSE LENGTH=882;; (*ITAG) Solyc09g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:779711-793133 transcript_region:SL2.40ch09:779711..793133+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 9B (AHRD V1 *--- B9A6K8_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00003619g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|0.5|2|210|62; (*ITAG) Solyc09g007160.2.1 (e_value=5e-25) genomic_reference:SL2.40ch09 gene_region:779711-793133 transcript_region:SL2.40ch09:779711..793133+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 9B (AHRD V1 *--- B9A6K8_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00039977g0002.1 protein AED:0.17 eAED:0.27 QI:0|0|0|1|0|0|2|0|127; (*GB) gi|350534420|ref|NP_001233884.1| (e_value=2e-18) leucine aminopeptidase 2, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q42876|AMPL2_SOLLC (e_value=5e-20) Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1;; (*TAIR) AT4G30920.1 (e_value=7e-16) | Symbols: | Cytosol aminopeptidase family protein | chr4:15046589-15049304 REVERSE LENGTH=583;; (*ITAG) Solyc12g010040.1.1 (e_value=4e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3180908-3187436 transcript_region:SL2.40ch12:3180908..3187436- go_terms:GO:0003779 functional_description:"Leucyl aminopeptidase (AHRD V1 ***- D7DWG6_NOSA0); contains Interpro domain(s) IPR011356 Peptidase M17, leucyl aminopeptidase IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal "; GO:0003779 NbS00001654g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.6|1|0.75|0.8|5|0|329; (*GB) gi|350539015|ref|NP_001234114.1| (e_value=3e-137) mannan endo-1,4-beta-mannosidase precursor [Solanum lycopersicum];; (*SWP) sp|Q8L5J1|MAN4_SOLLC (e_value=9e-139) Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2;; (*TAIR) AT5G66460.1 (e_value=7e-104) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc01g008720.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2760070-2763366 transcript_region:SL2.40ch01:2760070..2763366+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00025662g0002.1 protein AED:0.08 eAED:0.10 QI:0|1|0|1|1|1|2|0|715; (*GB) gi|298205256|emb|CBI17315.3| (e_value=4e-147) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G13630.2 (e_value=4e-26) | Symbols: | Protein of unknown function, DUF593 | chr4:7934093-7936029 REVERSE LENGTH=569;; (*ITAG) Solyc12g098380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64245964-64250473 transcript_region:SL2.40ch12:64245964..64250473+ functional_description:"IFA-binding protein (AHRD V1 *-*- Q9CAC4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00025662g0013.1 protein AED:0.14 eAED:0.14 QI:169|0.75|0.8|1|1|1|5|339|269; (*GB) gi|255554128|ref|XP_002518104.1| (e_value=5e-103) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-49) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G13640.1 (e_value=3e-81) | Symbols: UNE16 | Homeodomain-like superfamily protein | chr4:7936864-7938497 REVERSE LENGTH=292;; (*ITAG) Solyc12g098370.1.1 (e_value=4e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64240497-64244525 transcript_region:SL2.40ch12:64240497..64244525+ go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00025662g0005.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.16|1|1|6|0|140 NbS00025662g0009.1 protein AED:0.19 eAED:0.21 QI:0|0.3|0.54|1|0.8|0.81|11|124|705; (*GB) gi|359495445|ref|XP_002274340.2| (e_value=4e-117) PREDICTED: uncharacterized protein LOC100259671 [Vitis vinifera];; (*TAIR) AT3G18670.1 (e_value=5e-30) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc12g098390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64250702-64256979 transcript_region:SL2.40ch12:64250702..64256979- functional_description:"Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A (AHRD V1 *--- ANR28_MOUSE); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00050199g0007.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0.5|0.33|3|0|974; (*GB) gi|225429912|ref|XP_002281133.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera];; (*SWP) sp|O82318|Y2579_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1;; (*TAIR) AT2G25790.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr2:11000631-11004031 FORWARD LENGTH=960;; (*ITAG) Solyc08g066490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52383161-52387655 transcript_region:SL2.40ch08:52383161..52387655+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00057981g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0.33|1|0|0.33|3|390|148; (*GB) gi|224113637|ref|XP_002316529.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAA6|PPR34_ARATH (e_value=2e-17) Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1;; (*TAIR) AT1G11710.1 (e_value=1e-18) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3948886-3950859 FORWARD LENGTH=657; NbS00057981g0008.1 protein AED:0.34 eAED:0.34 QI:209|1|0.83|1|0.8|0.66|6|0|444; (*GB) gi|118488294|gb|ABK95966.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1;; (*TAIR) AT2G20680.1 (e_value=0.0) | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily protein | chr2:8921024-8923066 FORWARD LENGTH=433;; (*ITAG) Solyc10g008300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2446485-2451132 transcript_region:SL2.40ch10:2446485..2451132- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00055482g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|0.75|4|0|118; (*GB) gi|225435345|ref|XP_002285246.1| (e_value=1e-67) PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Vitis vinifera];; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=3e-64) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.2 (e_value=2e-65) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=239;; (*ITAG) Solyc11g069570.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51273029-51276687 transcript_region:SL2.40ch11:51273029..51276687- functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00027926g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|286; (*GB) gi|688423|dbj|BAA05470.1| (e_value=3e-104) tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii];; (*SWP) sp|Q41558|HBP1C_WHEAT (e_value=5e-15) Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT3G14880.2 (e_value=1e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5006565-5007689 FORWARD LENGTH=237;; (*ITAG) Solyc05g056410.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64865548-64866369 transcript_region:SL2.40ch05:64865548..64866369- functional_description:"BZIP transcription factor (AHRD V1 *-*- Q8W5R8_ORYSA)"; NbS00027926g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.57|0.5|1|1|1|8|0|379; (*GB) gi|47933777|gb|AAT39459.1| (e_value=1e-163) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=4e-158) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=3e-148) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g056400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64861547-64864585 transcript_region:SL2.40ch05:64861547..64864585+ go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00033166g0003.1 protein AED:0.44 eAED:0.53 QI:0|0.4|0.5|0.83|0|0.16|6|118|146; (*GB) gi|255582409|ref|XP_002531993.1| (e_value=2e-31) cytochrome-c oxidase, putative [Ricinus communis];; (*SWP) sp|Q9T070|COX6A_ARATH (e_value=3e-29) Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1;; (*TAIR) AT4G37830.1 (e_value=2e-30) | Symbols: | cytochrome c oxidase-related | chr4:17787672-17788762 REVERSE LENGTH=102;; (*ITAG) Solyc02g091880.2.1 (e_value=2e-51) genomic_reference:SL2.40ch02 gene_region:47688583-47691682 transcript_region:SL2.40ch02:47688583..47691682+ go_terms:GO:0030234,GO:0004129 functional_description:"Cytochrome c oxidase subunit VIa family protein expressed (AHRD V1 **** Q7XZW4_ORYSJ); contains Interpro domain(s) IPR001349 Cytochrome c oxidase, subunit VIa "; GO:0030234,GO:0004129 NbS00006351g0004.1 protein AED:0.00 eAED:0.02 QI:34|-1|0|1|-1|1|1|0|722; (*GB) gi|356573853|ref|XP_003555070.1| (e_value=0.0) PREDICTED: putative endo-1,3(4)-beta-glucanase 2-like [Glycine max];; (*SWP) sp|Q9UT45|ENG1_SCHPO (e_value=1e-30) Endo-1,3(4)-beta-glucanase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng1 PE=2 SV=1;; (*TAIR) AT5G15870.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc02g089720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46036643-46038802 transcript_region:SL2.40ch02:46036643..46038802+ go_terms:GO:0016798 functional_description:"Endo-beta-1 3-glucanase (AHRD V1 ***- B5THH0_PNECA); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00006351g0014.1 protein AED:0.08 eAED:0.08 QI:658|1|1|1|0.77|0.6|10|298|682; (*GB) gi|356567172|ref|XP_003551795.1| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max];; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT5G38560.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:15439844-15443007 FORWARD LENGTH=681;; (*ITAG) Solyc05g010140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4310407-4314499 transcript_region:SL2.40ch05:4310407..4314499- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006351g0005.1 protein AED:0.08 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|642; (*GB) gi|224079904|ref|XP_002305966.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P53753|ENG1_YEAST (e_value=6e-23) Endo-1,3(4)-beta-glucanase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSE4 PE=1 SV=1;; (*TAIR) AT5G15870.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc02g089730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46043034-46045142 transcript_region:SL2.40ch02:46043034..46045142+ go_terms:GO:0016798 functional_description:"Endo-1 3-beta-glucanase (AHRD V1 ***- C5FLR9_NANOT); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00006351g0002.1 protein AED:0.32 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|245 NbS00044761g0001.1 protein AED:0.10 eAED:0.11 QI:0|0.75|0.4|1|1|1|5|0|207; (*GB) gi|47716659|gb|AAT37529.1| (e_value=3e-126) purple acid phosphatase 1 [Solanum tuberosum];; (*SWP) sp|Q8VYZ2|PPA8_ARATH (e_value=1e-98) Purple acid phosphatase 8 OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1;; (*TAIR) AT2G01890.1 (e_value=8e-100) | Symbols: PAP8, ATPAP8 | purple acid phosphatase 8 | chr2:396985-399168 REVERSE LENGTH=335;; (*ITAG) Solyc04g008260.2.1 (e_value=6e-127) genomic_reference:SL2.40ch04 gene_region:1939951-1945165 transcript_region:SL2.40ch04:1939951..1945165- go_terms:GO:0004722 functional_description:"Acid phosphatase (AHRD V1 **** B9XQU4_9BACT); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00020282g0005.1 protein AED:0.20 eAED:0.22 QI:553|0.87|0.66|1|0.62|0.66|9|0|249; (*GB) gi|222159969|gb|ACM47318.1| (e_value=3e-112) putative zinc ion binding protein [Capsicum annuum];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=1e-68) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.2 (e_value=1e-69) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc06g073860.1.1 (e_value=9e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41998917-42000551 transcript_region:SL2.40ch06:41998917..42000551+ functional_description:"RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI)"; NbS00032449g0103.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|446 NbS00032449g0102.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|216 NbS00035481g0006.1 protein AED:0.09 eAED:0.09 QI:296|1|0.83|1|1|0.83|6|0|562; (*GB) gi|356565172|ref|XP_003550818.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=3e-176) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=2e-177) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc07g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2672425-2675811 transcript_region:SL2.40ch07:2672425..2675811+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009432g0005.1 protein AED:0.36 eAED:0.40 QI:45|0.33|0.25|1|1|1|4|0|346; (*GB) gi|224096209|ref|XP_002310575.1| (e_value=4e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g054900.2.1 (e_value=7e-148) genomic_reference:SL2.40ch04 gene_region:52531782-52535312 transcript_region:SL2.40ch04:52531782..52535312+ functional_description:"Genomic DNA chromosome 5 P1 clone MQN23 (AHRD V1 *-*- Q9FJQ3_ARATH)"; NbS00007980g0003.1 protein AED:0.07 eAED:0.07 QI:5|1|0.5|1|1|1|2|0|260; (*GB) gi|312836|emb|CAA49895.1| (e_value=2e-76) proline-rich protein [Nicotiana alata];; (*SWP) sp|Q03211|PEXLP_TOBAC (e_value=3e-25) Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G34700.1 (e_value=1e-26) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:14634298-14635597 REVERSE LENGTH=175;; (*ITAG) Solyc02g078100.2.1 (e_value=8e-66) genomic_reference:SL2.40ch02 gene_region:37460455-37462015 transcript_region:SL2.40ch02:37460455..37462015- go_terms:GO:0005199 functional_description:"pistil extensin-like protein (Fragment) (AHRD V1 *-*- Q49I33_NICPL); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00013046g0002.1 protein AED:0.10 eAED:0.10 QI:753|1|1|1|0.71|0.25|8|871|521; (*GB) gi|225438996|ref|XP_002284429.1| (e_value=0.0) PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform 1 [Vitis vinifera];; (*SWP) sp|O81108|ACA2_ARATH (e_value=0.0) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1;; (*TAIR) AT4G37640.1 (e_value=0.0) | Symbols: ACA2 | calcium ATPase 2 | chr4:17683225-17686808 REVERSE LENGTH=1014;; (*ITAG) Solyc02g092450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48078895-48083354 transcript_region:SL2.40ch02:48078895..48083354+ go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00014019g0025.1 protein AED:0.05 eAED:0.05 QI:36|1|1|1|0|0.25|4|25|285; (*GB) gi|255560117|ref|XP_002521076.1| (e_value=4e-140) Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SV60|XTH2_ARATH (e_value=1e-119) Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1;; (*TAIR) AT4G13090.1 (e_value=7e-121) | Symbols: XTH2 | xyloglucan endotransglucosylase/hydrolase 2 | chr4:7631535-7632870 REVERSE LENGTH=292;; (*ITAG) Solyc05g053700.1.1 (e_value=4e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62890386-62893341 transcript_region:SL2.40ch05:62890386..62893341+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** D5HRN0_FRAAN); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00014019g0006.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|262; (*GB) gi|359495595|ref|XP_002265382.2| (e_value=5e-15) PREDICTED: uncharacterized protein LOC100259312 [Vitis vinifera];; (*TAIR) AT3G25130.1 (e_value=5e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc06g007790.1.1 (e_value=3e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1734549-1735550 transcript_region:SL2.40ch06:1734549..1735550- functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00014019g0001.1 protein AED:0.11 eAED:0.22 QI:0|0|0|1|1|1|2|0|169; (*ITAG) Solyc06g007880.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:1779132-1779692 transcript_region:SL2.40ch06:1779132..1779692- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MVE2_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00014019g0021.1 protein AED:0.26 eAED:0.26 QI:112|0.6|0.83|0.83|0.2|0.16|6|216|220; (*GB) gi|356538599|ref|XP_003537790.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100792853 [Glycine max];; (*ITAG) Solyc06g007870.2.1 (e_value=1e-46) genomic_reference:SL2.40ch06 gene_region:1760043-1761388 transcript_region:SL2.40ch06:1760043..1761388- functional_description:"Unknown Protein (AHRD V1)"; NbS00014019g0026.1 protein AED:0.31 eAED:0.31 QI:299|0.83|0.71|1|0.5|0.57|7|303|201; (*GB) gi|225463868|ref|XP_002267796.1| (e_value=1e-81) PREDICTED: uncharacterized protein LOC100246803 [Vitis vinifera];; (*TAIR) AT3G07170.1 (e_value=4e-61) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203;; (*ITAG) Solyc09g059620.2.1 (e_value=5e-99) genomic_reference:SL2.40ch09 gene_region:50519658-50529728 transcript_region:SL2.40ch09:50519658..50529728- go_terms:GO:0016757 functional_description:"SAM domain family protein (AHRD V1 **-- B6TMA1_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0016757 NbS00014019g0009.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|133; (*GB) gi|224065407|ref|XP_002301802.1| (e_value=9e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25130.1 (e_value=1e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). | chr3:9152434-9153654 FORWARD LENGTH=406;; (*ITAG) Solyc06g007790.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1734549-1735550 transcript_region:SL2.40ch06:1734549..1735550- functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00014019g0022.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|394|188; (*GB) gi|224069860|ref|XP_002303058.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25120.1 (e_value=7e-50) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:9149785-9151068 REVERSE LENGTH=189;; (*ITAG) Solyc06g007800.2.1 (e_value=2e-96) genomic_reference:SL2.40ch06 gene_region:1739565-1743762 transcript_region:SL2.40ch06:1739565..1743762+ go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (AHRD V1 *-*- D7L5V0_ARALY); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00014019g0029.1 protein AED:0.29 eAED:0.29 QI:172|0.66|0.6|0.9|0.55|0.4|10|0|445; (*GB) gi|147842983|emb|CAN80553.1| (e_value=4e-88) hypothetical protein VITISV_024360 [Vitis vinifera];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=7e-19) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.2 (e_value=2e-62) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc06g007780.2.1 (e_value=7e-149) genomic_reference:SL2.40ch06 gene_region:1728885-1733953 transcript_region:SL2.40ch06:1728885..1733953+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00014019g0030.1 protein AED:0.31 eAED:0.31 QI:107|0.8|0.83|1|0.6|0.83|6|218|259; (*GB) gi|77745477|gb|ABB02637.1| (e_value=8e-116) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|P48583|ERD2_CAEEL (e_value=3e-22) ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2;; (*TAIR) AT3G25160.1 (e_value=2e-94) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc06g007770.2.1 (e_value=5e-153) genomic_reference:SL2.40ch06 gene_region:1722744-1726008 transcript_region:SL2.40ch06:1722744..1726008+ go_terms:GO:0004872,GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 **** Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0004872,GO:0005046 NbS00039277g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|2|111|162; (*GB) gi|225447235|ref|XP_002278171.1| (e_value=6e-27) PREDICTED: uncharacterized protein LOC100253450 [Vitis vinifera];; (*ITAG) Solyc10g008540.2.1 (e_value=1e-38) genomic_reference:SL2.40ch10 gene_region:2655519-2659448 transcript_region:SL2.40ch10:2655519..2659448+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056759g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|3|0|224; (*GB) gi|255576868|ref|XP_002529320.1| (e_value=7e-59) cellulose synthase, putative [Ricinus communis];; (*SWP) sp|Q651X6|CSLE6_ORYSJ (e_value=8e-30) Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1;; (*TAIR) AT4G24010.1 (e_value=3e-25) | Symbols: ATCSLG1, CSLG1 | cellulose synthase like G1 | chr4:12466391-12469760 FORWARD LENGTH=760;; (*ITAG) Solyc03g005450.2.1 (e_value=2e-86) genomic_reference:SL2.40ch03 gene_region:338588-346614 transcript_region:SL2.40ch03:338588..346614+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B2LWL9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00031448g0006.1 protein AED:0.22 eAED:0.24 QI:0|0.4|0.33|1|1|1|6|0|464; (*GB) gi|224138316|ref|XP_002326572.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P25697|KPPR_ARATH (e_value=0.0) Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1;; (*TAIR) AT1G32060.1 (e_value=0.0) | Symbols: PRK | phosphoribulokinase | chr1:11532668-11534406 FORWARD LENGTH=395;; (*ITAG) Solyc08g076220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57405726-57410850 transcript_region:SL2.40ch08:57405726..57410850+ go_terms:GO:0005515 functional_description:"Phosphoribulokinase/uridine kinase (AHRD V1 ***- B7KI62_CYAP7); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0005515 NbS00031448g0009.1 protein AED:0.45 eAED:0.45 QI:181|1|0.75|1|1|1|4|0|97; (*GB) gi|218744536|dbj|BAH03477.1| (e_value=2e-45) secretory carrier-associated membrane protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9C6X2|SCAM4_ARATH (e_value=5e-38) Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1;; (*TAIR) AT1G32050.1 (e_value=4e-39) | Symbols: | SCAMP family protein | chr1:11528616-11530974 FORWARD LENGTH=264;; (*ITAG) Solyc08g076210.2.1 (e_value=1e-43) genomic_reference:SL2.40ch08 gene_region:57395919-57403348 transcript_region:SL2.40ch08:57395919..57403348+ go_terms:GO:0019904 functional_description:"Secretory carrier-associated membrane protein 2 (AHRD V1 ***- B7X6S6_TOBAC); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00031448g0007.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.16|1|1|6|0|407; (*GB) gi|319718175|gb|ADV59389.1| (e_value=1e-27) GAGA-binding transcriptional activator [Solanum lycopersicum];; (*SWP) sp|O82286|BPC7_ARATH (e_value=4e-25) Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1;; (*TAIR) AT2G35550.1 (e_value=4e-26) | Symbols: BPC7, BBR, ATBPC7 | basic pentacysteine 7 | chr2:14929526-14930618 FORWARD LENGTH=271;; (*ITAG) Solyc08g076230.1.1 (e_value=2e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:57411107-57411766 transcript_region:SL2.40ch08:57411107..57411766- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 *-*- D7LHX4_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00008980g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|375; (*GB) gi|224129194|ref|XP_002320524.1| (e_value=6e-135) fasciclin-like arabinogalactan protein [Populus trichocarpa];; (*SWP) sp|Q9SU13|FLA2_ARATH (e_value=3e-121) Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1;; (*TAIR) AT4G12730.1 (e_value=2e-122) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403;; (*ITAG) Solyc07g045440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55861244-55862473 transcript_region:SL2.40ch07:55861244..55862473- functional_description:"Fasciclin-like arabinogalactan protein 19 (AHRD V1 ***- A9XTM4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00008980g0009.1 protein AED:0.56 eAED:0.83 QI:0|0|0|0.4|0.75|0.6|5|0|118 NbS00008980g0008.1 protein AED:0.26 eAED:0.38 QI:0|0|0|1|0|0|4|0|182; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00048622g0003.1 protein AED:0.09 eAED:0.09 QI:190|1|1|1|0.42|0.37|8|387|408; (*GB) gi|255574761|ref|XP_002528288.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G21190.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:7432579-7434543 REVERSE LENGTH=422;; (*ITAG) Solyc06g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36331992-36336504 transcript_region:SL2.40ch06:36331992..36336504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00056515g0002.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|131; (*GB) gi|147841887|emb|CAN65217.1| (e_value=6e-34) hypothetical protein VITISV_024689 [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=1e-22) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=3e-34) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051920.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57792333-57793301 transcript_region:SL2.40ch07:57792333..57793301+ go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00056515g0003.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|64 NbS00027354g0010.1 protein AED:0.06 eAED:0.10 QI:42|1|1|1|0.33|0.5|4|148|209; (*GB) gi|224107701|ref|XP_002314569.1| (e_value=8e-105) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13195.1 (e_value=9e-93) | Symbols: | RING/U-box superfamily protein | chr1:4501778-4503347 REVERSE LENGTH=260;; (*ITAG) Solyc05g014230.2.1 (e_value=4e-143) genomic_reference:SL2.40ch05 gene_region:7983463-7985594 transcript_region:SL2.40ch05:7983463..7985594- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7KQC9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00027354g0015.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|150; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027354g0005.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|143; (*ITAG) Solyc11g013210.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00027354g0016.1 protein AED:0.17 eAED:0.25 QI:0|0.33|0|1|0.33|0.5|4|0|485; (*GB) gi|225425932|ref|XP_002267715.1| (e_value=2e-90) PREDICTED: GDSL esterase/lipase At3g48460-like [Vitis vinifera];; (*SWP) sp|Q9STM6|GDL57_ARATH (e_value=5e-58) GDSL esterase/lipase At3g48460 OS=Arabidopsis thaliana GN=At3g48460 PE=2 SV=1;; (*TAIR) AT3G48460.1 (e_value=4e-59) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:17949496-17951082 FORWARD LENGTH=381;; (*ITAG) Solyc05g014210.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:7979323-7982470 transcript_region:SL2.40ch05:7979323..7982470+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At3g48460 (AHRD V1 *-*- GDL57_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00027354g0014.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.66|0|0|3|0|145 NbC24918872g0001.1 protein AED:0.02 eAED:0.02 QI:13|-1|0|1|-1|0|1|0|114; (*GB) gi|57013977|ref|YP_173449.1| (e_value=6e-65) hypothetical protein NitaMp111 [Nicotiana tabacum]; NbS00016760g0005.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|60 NbS00060494g0002.1 protein AED:0.00 eAED:0.00 QI:206|1|1|1|0|0|2|194|143; (*GB) gi|225428094|ref|XP_002280425.1| (e_value=4e-86) PREDICTED: uncharacterized protein LOC100255620 [Vitis vinifera];; (*TAIR) AT4G38500.1 (e_value=6e-77) | Symbols: | Protein of unknown function (DUF616) | chr4:18008418-18010693 FORWARD LENGTH=499;; (*ITAG) Solyc01g111770.2.1 (e_value=3e-97) genomic_reference:SL2.40ch01 gene_region:89707745-89712319 transcript_region:SL2.40ch01:89707745..89712319- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00042653g0003.1 protein AED:0.41 eAED:0.60 QI:0|0|0|1|1|1|2|0|131; (*ITAG) Solyc01g056230.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00042653g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|359494840|ref|XP_003634851.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8LE47|PPR87_ARATH (e_value=2e-165) Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2;; (*TAIR) AT1G61870.1 (e_value=1e-166) | Symbols: PPR336 | pentatricopeptide repeat 336 | chr1:22865326-22866552 REVERSE LENGTH=408;; (*ITAG) Solyc10g005280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:213419-214627 transcript_region:SL2.40ch10:213419..214627+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVE2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006824g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|57013967|ref|YP_173439.1| (e_value=3e-24) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00057080g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|0.5|2|0|227; (*GB) gi|224055583|ref|XP_002298551.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27550.1 (e_value=9e-36) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:10208010-10209899 REVERSE LENGTH=491;; (*ITAG) Solyc07g047900.2.1 (e_value=6e-75) genomic_reference:SL2.40ch07 gene_region:56430159-56433693 transcript_region:SL2.40ch07:56430159..56433693- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00057080g0008.1 protein AED:0.28 eAED:0.31 QI:0|1|0|1|1|1|2|0|253; (*GB) gi|225449156|ref|XP_002278214.1| (e_value=2e-88) PREDICTED: uncharacterized protein LOC100263359 [Vitis vinifera];; (*TAIR) AT2G35820.1 (e_value=5e-78) | Symbols: | ureidoglycolate hydrolases | chr2:15050933-15052004 FORWARD LENGTH=192;; (*ITAG) Solyc10g005830.2.1 (e_value=3e-127) genomic_reference:SL2.40ch10 gene_region:646209-647697 transcript_region:SL2.40ch10:646209..647697+ functional_description:"Homoserine dehydrogenase-like (AHRD V1 ***- Q5QLC2_ORYSJ)"; NbS00001232g0001.1 protein AED:0.00 eAED:0.01 QI:23|1|0.5|1|0|0.5|2|0|374; (*GB) gi|53749473|gb|AAU90326.1| (e_value=0.0) Putative kinase interacting protein, identical [Solanum demissum];; (*TAIR) AT1G48405.1 (e_value=1e-30) | Symbols: | Kinase interacting (KIP1-like) family protein | chr1:17884645-17885614 REVERSE LENGTH=297;; (*ITAG) Solyc03g098450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54188352-54191657 transcript_region:SL2.40ch03:54188352..54191657- functional_description:"Protein Kinase interacting protein (AHRD V1 ***- B6TI58_MAIZE); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00001232g0007.1 protein AED:0.25 eAED:0.26 QI:0|0.46|0.42|0.92|0.76|0.71|14|244|1106; (*GB) gi|113205417|gb|AAU90328.2| (e_value=0.0) Pentatricopeptide repeat domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q9S7F4|PP206_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1;; (*TAIR) AT3G02010.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825;; (*ITAG) Solyc03g098420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54177254-54179882 transcript_region:SL2.40ch03:54177254..54179882+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2Q7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00043937g0010.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0.33|3|0|695; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=0.0) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9M0M5|SCL13_ARATH (e_value=0.0) Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2;; (*TAIR) AT4G17230.1 (e_value=0.0) | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529;; (*ITAG) Solyc11g012510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5329768-5331396 transcript_region:SL2.40ch11:5329768..5331396- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00043937g0001.1 protein AED:0.43 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=3e-54) GRAS1 protein [Solanum lycopersicum];; (*ITAG) Solyc11g012510.1.1 (e_value=2e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5329768-5331396 transcript_region:SL2.40ch11:5329768..5331396- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00043937g0011.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|0|0|2|0|170; (*ITAG) Solyc11g012500.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5326716-5327739 transcript_region:SL2.40ch11:5326716..5327739- functional_description:"Unknown Protein (AHRD V1)"; NbS00043964g0004.1 protein AED:0.29 eAED:0.29 QI:300|0.57|0.62|1|0.57|0.5|8|314|271; (*GB) gi|255587734|ref|XP_002534376.1| (e_value=8e-112) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q67YS6|ALIS2_ARATH (e_value=2e-95) Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1;; (*TAIR) AT5G46150.1 (e_value=1e-96) | Symbols: | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr5:18708735-18710424 REVERSE LENGTH=343;; (*ITAG) Solyc08g023460.2.1 (e_value=8e-140) genomic_reference:SL2.40ch08 gene_region:16760675-16774732 transcript_region:SL2.40ch08:16760675..16774732+ go_terms:GO:0005515,GO:0004970 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515,GO:0004970 NbS00014987g0010.1 protein AED:0.09 eAED:0.10 QI:198|1|0.8|1|1|1|5|0|287; (*GB) gi|225445360|ref|XP_002284876.1| (e_value=1e-123) PREDICTED: transmembrane protein 19 [Vitis vinifera];; (*SWP) sp|Q5RF73|TMM19_PONAB (e_value=1e-48) Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1;; (*TAIR) AT5G19930.2 (e_value=1e-114) | Symbols: | Protein of unknown function DUF92, transmembrane | chr5:6737872-6739283 REVERSE LENGTH=288;; (*ITAG) Solyc10g079970.1.1 (e_value=4e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60715349-60720167 transcript_region:SL2.40ch10:60715349..60720167- functional_description:"Transmembrane protein 19 (AHRD V1 **-- A7E3R1_BOVIN); contains Interpro domain(s) IPR002794 Protein of unknown function DUF92, transmembrane "; NbS00014987g0009.1 protein AED:0.29 eAED:0.29 QI:216|1|1|1|1|1|11|138|377; (*GB) gi|225445456|ref|XP_002285099.1| (e_value=0.0) PREDICTED: probable ethanolamine kinase A [Vitis vinifera];; (*SWP) sp|Q869T9|EKIA_DICDI (e_value=3e-73) Probable ethanolamine kinase A OS=Dictyostelium discoideum GN=etnkA PE=3 SV=1;; (*TAIR) AT2G26830.1 (e_value=0.0) | Symbols: emb1187 | Protein kinase superfamily protein | chr2:11443599-11446958 FORWARD LENGTH=374;; (*ITAG) Solyc08g066820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52878704-52890950 transcript_region:SL2.40ch08:52878704..52890950- go_terms:GO:0004305,GO:0004103 functional_description:"Choline/ethanolamine kinase (AHRD V1 **** B6T558_MAIZE); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004305,GO:0004103 NbS00014987g0012.1 protein AED:0.24 eAED:0.24 QI:280|0.83|0.85|1|1|1|7|0|320; (*GB) gi|77539384|dbj|BAE46565.1| (e_value=0.0) putative WD-40 repeat protein [Nicotiana glutinosa];; (*SWP) sp|Q54LT8|STRAP_DICDI (e_value=4e-78) Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1;; (*TAIR) AT1G52730.1 (e_value=7e-175) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:19642866-19644978 FORWARD LENGTH=343;; (*ITAG) Solyc03g120010.2.1 (e_value=4e-168) genomic_reference:SL2.40ch03 gene_region:62568976-62573796 transcript_region:SL2.40ch03:62568976..62573796- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 **-- B6SSB6_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00014987g0110.1 protein AED:0.34 eAED:0.35 QI:0|0.66|0.5|0.7|0.66|0.8|10|0|628 NbS00023846g0004.1 protein AED:0.30 eAED:0.35 QI:202|0.6|0.83|1|0.4|0.66|6|0|163; (*GB) gi|267850663|gb|ACY82403.1| (e_value=1e-83) MADS-box protein 20 [Petunia x hybrida];; (*SWP) sp|Q9FUY6|JOIN_SOLLC (e_value=2e-82) MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1;; (*TAIR) AT2G22540.1 (e_value=5e-81) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc11g010570.1.1 (e_value=2e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3640857-3645766 transcript_region:SL2.40ch11:3640857..3645766+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00042502g0007.1 protein AED:0.39 eAED:0.39 QI:0|1|0.71|1|1|0.85|7|118|367; (*GB) gi|225429702|ref|XP_002280130.1| (e_value=5e-133) PREDICTED: uncharacterized protein LOC100266232 [Vitis vinifera];; (*TAIR) AT2G26310.1 (e_value=7e-92) | Symbols: | Chalcone-flavanone isomerase family protein | chr2:11201770-11203919 FORWARD LENGTH=398;; (*ITAG) Solyc08g061480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45975801-45982039 transcript_region:SL2.40ch08:45975801..45982039+ go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 *-*- B6TFR7_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00041504g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|176; (*GB) gi|6683959|gb|AAF23413.1|AF207556_1 (e_value=7e-79) cinnamyl alcohol dehydrogenase [Brassica napus];; (*SWP) sp|P42734|CADH9_ARATH (e_value=5e-73) Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2;; (*TAIR) AT4G39330.1 (e_value=4e-74) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc03g078440.2.1 (e_value=1e-86) genomic_reference:SL2.40ch03 gene_region:44480781-44483641 transcript_region:SL2.40ch03:44480781..44483641+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** B9GGU3_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00003763g0011.1 protein AED:0.11 eAED:0.11 QI:92|0.5|0.33|0.66|0|0|3|0|59 NbS00003763g0016.1 protein AED:0.10 eAED:0.12 QI:0|0.92|0.8|0.93|1|1|15|0|884; (*GB) gi|225441896|ref|XP_002284404.1| (e_value=0.0) PREDICTED: uncharacterized protein At2g41620 [Vitis vinifera];; (*SWP) sp|O22224|Y2162_ARATH (e_value=0.0) Uncharacterized protein At2g41620 OS=Arabidopsis thaliana GN=At2g41620 PE=2 SV=2;; (*TAIR) AT2G41620.1 (e_value=0.0) | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like) family protein | chr2:17350419-17354997 REVERSE LENGTH=861;; (*ITAG) Solyc04g016240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7033018-7042931 transcript_region:SL2.40ch04:7033018..7042931- go_terms:GO:0005515 functional_description:"Nuclear pore complex protein Nup93-like protein (AHRD V1 *--- D0MQC8_PHYIN); contains Interpro domain(s) IPR007231 Nucleoporin interacting component Nup93/Nic96 "; GO:0005515 NbS00003763g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|0.75|0.33|0.25|4|0|673; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=2e-136) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=4e-113) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G18570.1 (e_value=1e-50) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:8063429-8064841 FORWARD LENGTH=470;; (*ITAG) Solyc04g016230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7013160-7015136 transcript_region:SL2.40ch04:7013160..7015136- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00003763g0014.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|307|214; (*GB) gi|225441898|ref|XP_002284412.1| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100246864 isoform 1 [Vitis vinifera];; (*TAIR) AT2G41600.5 (e_value=3e-55) | Symbols: | Mitochondrial glycoprotein family protein | chr2:17344747-17346701 REVERSE LENGTH=220;; (*ITAG) Solyc04g016250.2.1 (e_value=6e-87) genomic_reference:SL2.40ch04 gene_region:7045007-7049591 transcript_region:SL2.40ch04:7045007..7049591+ go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein expressed (AHRD V1 *-*- Q2RAS2_ORYSJ); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00003763g0017.1 protein AED:0.44 eAED:0.70 QI:0|0|0|1|0|0|2|0|111 NbS00013281g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.7|0.63|0.90|0.8|0.72|11|257|477; (*GB) gi|224094965|ref|XP_002310307.1| (e_value=5e-179) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1D6|RBK1_ARATH (e_value=4e-150) Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1;; (*TAIR) AT5G65530.1 (e_value=2e-152) | Symbols: | Protein kinase superfamily protein | chr5:26190844-26192826 REVERSE LENGTH=456;; (*ITAG) Solyc11g010730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3769620-3777208 transcript_region:SL2.40ch11:3769620..3777208- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013281g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|356543078|ref|XP_003539990.1| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100805066 [Glycine max];; (*TAIR) AT1G06340.1 (e_value=7e-33) | Symbols: | Plant Tudor-like protein | chr1:1933583-1933987 REVERSE LENGTH=134;; (*ITAG) Solyc06g072450.1.1 (e_value=7e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41080201-41080725 transcript_region:SL2.40ch06:41080201..41080725- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00047881g0002.1 protein AED:0.20 eAED:0.22 QI:41|0.5|0.66|1|1|0.66|3|0|180; (*ITAG) Solyc11g066830.1.1 (e_value=1e-13) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00047800g0008.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0|3|0|554; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=3e-121) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-120) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00015985g0005.1 protein AED:0.21 eAED:0.23 QI:140|1|0.66|1|0|0.33|3|0|210; (*ITAG) Solyc01g096620.2.1 (e_value=8e-66) genomic_reference:SL2.40ch01 gene_region:79449977-79452839 transcript_region:SL2.40ch01:79449977..79452839+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030624g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|61 NbS00059086g0002.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0|2|0|232; (*GB) gi|359477003|ref|XP_002264733.2| (e_value=8e-53) PREDICTED: cyanidin-3-O-glucoside 2-O-glucuronosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-38) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT2G23250.1 (e_value=2e-12) | Symbols: UGT84B2 | UDP-glucosyl transferase 84B2 | chr2:9897809-9899125 REVERSE LENGTH=438;; (*ITAG) Solyc11g007490.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1761848-1763179 transcript_region:SL2.40ch11:1761848..1763179- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00044143g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|342; (*GB) gi|238769999|dbj|BAH66920.1| (e_value=0.0) metal transporter [Nicotiana tabacum];; (*SWP) sp|O23039|ZIP5_ARATH (e_value=1e-124) Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=8e-126) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc07g043200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54130351-54132150 transcript_region:SL2.40ch07:54130351..54132150- go_terms:GO:0000006 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006 NbS00041077g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.66|0.83|1|1|6|0|245; (*GB) gi|225426050|ref|XP_002274995.1| (e_value=1e-122) PREDICTED: V-type proton ATPase subunit E [Vitis vinifera];; (*SWP) sp|Q9SWE7|VATE_CITLI (e_value=1e-122) V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1;; (*TAIR) AT4G11150.1 (e_value=7e-108) | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP synthase subunit E1 | chr4:6800091-6801696 FORWARD LENGTH=230;; (*ITAG) Solyc12g056110.1.1 (e_value=3e-132) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47434718-47440701 transcript_region:SL2.40ch12:47434718..47440701+ go_terms:GO:0033178 functional_description:"V-type proton ATPase subunit E (AHRD V1 ***- D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0033178 NbS00026312g0003.1 protein AED:0.26 eAED:0.34 QI:0|0|0|0.66|0.5|0.33|3|0|512; (*GB) gi|323435082|ref|YP_004222300.1| (e_value=1e-138) hypothetical protein BevumaM_p062 [Beta vulgaris subsp. maritima];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=2e-110) DNA polymerase OS=Zea mays PE=3 SV=1;; (*ITAG) Solyc03g013470.1.1 (e_value=3e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:5876619-5878402 transcript_region:SL2.40ch03:5876619..5878402- go_terms:GO:0006260 functional_description:"DNA polymerase (AHRD V1 *-*- Q6QZN8_DAUCA); contains Interpro domain(s) IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus "; GO:0006260 NbS00016909g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.33|1|0.8|0.66|6|0|613; (*GB) gi|359496542|ref|XP_003635262.1| (e_value=6e-125) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120-like [Vitis vinifera];; (*SWP) sp|O81906|B120_ARATH (e_value=3e-99) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=2e-100) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc10g005440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:319577-323262 transcript_region:SL2.40ch10:319577..323262- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00016909g0006.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|223975619|gb|ACN31997.1| (e_value=2e-54) unknown [Zea mays];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=7e-56) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=3e-55) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=2e-57) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00016909g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|224080059|ref|XP_002306003.1| (e_value=3e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=6e-35) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G30080.1 (e_value=2e-63) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:10551231-10553167 REVERSE LENGTH=408;; (*ITAG) Solyc02g070450.1.1 (e_value=3e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34763049-34764796 transcript_region:SL2.40ch02:34763049..34764796- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00016909g0019.1 protein AED:0.35 eAED:0.98 QI:44|0|0|1|0|0.66|3|148|17 NbS00016909g0017.1 protein AED:0.66 eAED:0.83 QI:9|0|0|0.5|0|0|2|0|69 NbS00021412g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|71; (*GB) gi|115479391|ref|NP_001063289.1| (e_value=2e-25) Os09g0442300 [Oryza sativa Japonica Group];; (*SWP) sp|P25778|ORYC_ORYSJ (e_value=6e-27) Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2;; (*TAIR) AT5G60360.1 (e_value=9e-25) | Symbols: SAG2, AALP, ALP | aleurain-like protease | chr5:24280044-24282152 FORWARD LENGTH=358;; (*ITAG) Solyc07g041900.2.1 (e_value=7e-26) genomic_reference:SL2.40ch07 gene_region:51828739-51831068 transcript_region:SL2.40ch07:51828739..51831068- go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin L-like cysteine proteinase (AHRD V1 **** A7LJ78_DERVA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0030984,GO:0004197 NbS00004314g0004.1 protein AED:0.20 eAED:0.20 QI:381|1|1|1|0.84|0.78|14|808|486; (*GB) gi|296084832|emb|CBI27714.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O54695|SPTC1_CRIGR (e_value=1e-116) Serine palmitoyltransferase 1 OS=Cricetulus griseus GN=SPTLC1 PE=1 SV=1;; (*TAIR) AT4G36480.2 (e_value=0.0) | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain base1 | chr4:17218598-17221124 FORWARD LENGTH=482;; (*ITAG) Solyc08g066020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:51676622-51687612 transcript_region:SL2.40ch08:51676622..51687612- go_terms:GO:0005515,GO:0004758 functional_description:"Serine C-palmitoyltransferase like protein (AHRD V1 **-* Q94IB8_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0005515,GO:0004758 NbS00029478g0002.1 protein AED:0.11 eAED:0.11 QI:65|1|1|1|0.66|0.75|4|531|317; (*GB) gi|301073323|gb|ADK56449.1| (e_value=4e-34) acyl-CoA-binding protein [Vitis vinifera];; (*SWP) sp|Q9STX1|ACBP3_ARATH (e_value=8e-29) Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1;; (*TAIR) AT4G24230.1 (e_value=5e-30) | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12567122-12568754 REVERSE LENGTH=364;; (*ITAG) Solyc04g078090.2.1 (e_value=1e-31) genomic_reference:SL2.40ch04 gene_region:60529683-60534340 transcript_region:SL2.40ch04:60529683..60534340+ go_terms:GO:0000062,GO:0005488 functional_description:"Acyl-CoA-binding domain-containing protein 6 (AHRD V1 *-*- B6SHQ7_MAIZE); contains Interpro domain(s) IPR000582 Acyl-CoA-binding protein, ACBP "; GO:0000062,GO:0005488 NbS00029478g0006.1 protein AED:0.15 eAED:0.15 QI:203|1|1|1|1|1|2|162|273; (*GB) gi|255567977|ref|XP_002524966.1| (e_value=2e-148) sigma factor sigb regulation protein rsbq, putative [Ricinus communis];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=5e-47) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=6e-143) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092760.2.1 (e_value=2e-172) genomic_reference:SL2.40ch02 gene_region:48299203-48300720 transcript_region:SL2.40ch02:48299203..48300720+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00005132g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|499; (*GB) gi|255573963|ref|XP_002527899.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q9LPV5|NRT25_ARATH (e_value=0.0) High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1;; (*TAIR) AT1G12940.1 (e_value=0.0) | Symbols: ATNRT2.5, NRT2.5 | nitrate transporter2.5 | chr1:4416405-4418337 FORWARD LENGTH=502;; (*ITAG) Solyc11g069750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00029488g0014.1 protein AED:0.02 eAED:0.02 QI:435|1|1|1|0.75|0.55|9|259|522; (*GB) gi|255558254|ref|XP_002520154.1| (e_value=2e-105) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27070.1 (e_value=7e-94) | Symbols: | 5'-AMP-activated protein kinase-related | chr1:9396945-9399225 REVERSE LENGTH=532;; (*ITAG) Solyc05g006930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1531674-1536511 transcript_region:SL2.40ch05:1531674..1536511+ functional_description:"5'-AMP-activated protein kinase subunit beta-2 (AHRD V1 *--- AAKB2_RAT)"; NbS00029488g0015.1 protein AED:0.25 eAED:0.25 QI:260|1|0.5|1|1|1|2|0|331; (*GB) gi|359473285|ref|XP_003631283.1| (e_value=3e-105) PREDICTED: uncharacterized protein LOC100853229 [Vitis vinifera];; (*TAIR) AT2G02590.1 (e_value=6e-97) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:704977-706494 FORWARD LENGTH=324;; (*ITAG) Solyc05g006970.2.1 (e_value=4e-136) genomic_reference:SL2.40ch05 gene_region:1552685-1555321 transcript_region:SL2.40ch05:1552685..1555321+ functional_description:"Small multidrug export protein (AHRD V1 *-*- D0GL52_9FUSO); contains Interpro domain(s) IPR009577 Putative small multi-drug export "; NbS00029488g0018.1 protein AED:0.18 eAED:0.18 QI:129|1|1|1|1|1|2|925|225; (*GB) gi|356498160|ref|XP_003517921.1| (e_value=3e-49) PREDICTED: uncharacterized protein At1g27050-like [Glycine max];; (*SWP) sp|P0CJ66|Y1705_ARATH (e_value=1e-44) Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1;; (*TAIR) AT1G27050.1 (e_value=8e-46) | Symbols: ATHB54, HB54 | homeobox protein 54 | chr1:9393706-9394408 FORWARD LENGTH=205;; (*ITAG) Solyc05g006960.2.1 (e_value=9e-115) genomic_reference:SL2.40ch05 gene_region:1549755-1551692 transcript_region:SL2.40ch05:1549755..1551692- go_terms:GO:0003676 functional_description:"Homeobox-leucine zipper protein ATHB-54 (AHRD V1 ***- ATB54_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00029488g0023.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|1|1|3|0|230; (*GB) gi|359473283|ref|XP_002269605.2| (e_value=5e-79) PREDICTED: homeobox-leucine zipper protein HAT5-like [Vitis vinifera];; (*SWP) sp|Q02283|HAT5_ARATH (e_value=1e-42) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=9e-44) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc05g006980.2.1 (e_value=3e-126) genomic_reference:SL2.40ch05 gene_region:1561232-1563997 transcript_region:SL2.40ch05:1561232..1563997- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00029488g0016.1 protein AED:0.29 eAED:0.30 QI:63|0.81|0.5|1|0.81|0.83|12|200|530; (*GB) gi|225424889|ref|XP_002269566.1| (e_value=1e-110) PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|Q6PAV2|HERC4_MOUSE (e_value=1e-24) Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2;; (*TAIR) AT1G27060.1 (e_value=2e-98) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr1:9395023-9396673 FORWARD LENGTH=386;; (*ITAG) Solyc05g006940.2.1 (e_value=9e-172) genomic_reference:SL2.40ch05 gene_region:1536690-1542139 transcript_region:SL2.40ch05:1536690..1542139- go_terms:GO:0005087,GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087,GO:0008536 NbS00009949g0012.1 protein AED:0.13 eAED:0.13 QI:394|1|1|1|1|1|3|368|500; (*GB) gi|63087752|emb|CAI93191.1| (e_value=0.0) glycosyltransferase [Solanum tuberosum];; (*SWP) sp|Q9FH90|IX14H_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1;; (*TAIR) AT5G67230.1 (e_value=0.0) | Symbols: IRX14-L, I14H | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:26822506-26824181 FORWARD LENGTH=492;; (*ITAG) Solyc11g011850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4801869-4806446 transcript_region:SL2.40ch11:4801869..4806446- go_terms:GO:0016020 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 *--- B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0016020 NbS00009949g0001.1 protein AED:0.18 eAED:0.18 QI:163|0.75|0.66|1|1|1|9|0|652; (*GB) gi|225466208|ref|XP_002265938.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 3-like [Vitis vinifera];; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=2e-84) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1;; (*TAIR) AT1G70530.1 (e_value=2e-85) | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=646;; (*ITAG) Solyc11g011880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4818939-4822147 transcript_region:SL2.40ch11:4818939..4822147- go_terms:GO:0004702 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702 NbS00009949g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|225450911|ref|XP_002280644.1| (e_value=7e-154) PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Vitis vinifera];; (*SWP) sp|Q9LUL5|PP229_ARATH (e_value=4e-153) Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2;; (*TAIR) AT3G14330.1 (e_value=3e-154) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4779688-4782451 REVERSE LENGTH=710;; (*ITAG) Solyc11g011860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4809870-4811810 transcript_region:SL2.40ch11:4809870..4811810+ go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L337_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00009949g0007.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|284; (*GB) gi|147800371|emb|CAN70930.1| (e_value=1e-91) hypothetical protein VITISV_000387 [Vitis vinifera];; (*SWP) sp|Q9LUL5|PP229_ARATH (e_value=2e-76) Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2;; (*TAIR) AT3G14330.1 (e_value=2e-77) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4779688-4782451 REVERSE LENGTH=710;; (*ITAG) Solyc11g011860.1.1 (e_value=1e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4809870-4811810 transcript_region:SL2.40ch11:4809870..4811810+ go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L337_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00006186g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.5|0.83|0.6|0.66|6|0|209; (*GB) gi|225448890|ref|XP_002270872.1| (e_value=6e-91) PREDICTED: uncharacterized protein SYNPCC7002_A1590 [Vitis vinifera];; (*TAIR) AT5G04440.1 (e_value=7e-92) | Symbols: | Protein of unknown function (DUF1997) | chr5:1254957-1256624 FORWARD LENGTH=255;; (*ITAG) Solyc05g055430.2.1 (e_value=9e-116) genomic_reference:SL2.40ch05 gene_region:64231117-64236053 transcript_region:SL2.40ch05:64231117..64236053- functional_description:"(RAP Annotation release2) Galactose-binding like domain containing protein (AHRD V1 **-- Q10RT4_ORYSJ); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 "; NbS00045605g0005.1 protein AED:0.12 eAED:0.12 QI:221|1|1|1|0.5|0.55|9|209|558; (*GB) gi|225427983|ref|XP_002277675.1| (e_value=0.0) PREDICTED: probable endo-1,4-beta-xylanase C-like [Vitis vinifera];; (*SWP) sp|P26514|XYNA_STRLI (e_value=1e-31) Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2;; (*TAIR) AT4G38650.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:18063377-18065769 FORWARD LENGTH=562;; (*ITAG) Solyc11g040330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30540584-30549013 transcript_region:SL2.40ch11:30540584..30549013+ go_terms:GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00011487g0010.1 protein AED:0.20 eAED:0.26 QI:0|0.25|0.2|0.8|0.5|0.6|5|0|255; (*GB) gi|1346736|sp|P49173.1|NIP1_NICAL (e_value=1e-86) RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein;; (*SWP) sp|P49173|NIP1_NICAL (e_value=4e-88) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37820.1 (e_value=6e-73) | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein 4;2 | chr5:15050261-15051542 FORWARD LENGTH=283;; (*ITAG) Solyc02g091420.2.1 (e_value=3e-81) genomic_reference:SL2.40ch02 gene_region:47291512-47293127 transcript_region:SL2.40ch02:47291512..47293127- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00011487g0007.1 protein AED:0.35 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|125 NbS00032865g0004.1 protein AED:0.05 eAED:0.08 QI:0|0.5|0.33|0.66|1|1|3|0|331; (*GB) gi|359492739|ref|XP_003634462.1| (e_value=6e-154) PREDICTED: aminoacylase-1 isoform 3 [Vitis vinifera];; (*SWP) sp|Q55DP8|ACY1_DICDI (e_value=1e-65) Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1;; (*TAIR) AT1G44820.1 (e_value=3e-156) | Symbols: | Peptidase M20/M25/M40 family protein | chr1:16926351-16928354 FORWARD LENGTH=438;; (*ITAG) Solyc11g012970.1.1 (e_value=7e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5799780-5805190 transcript_region:SL2.40ch11:5799780..5805190+ go_terms:GO:0008152,GO:0005737 functional_description:"Aminoacylase-1 (AHRD V1 ***- B6TNG9_MAIZE); contains Interpro domain(s) IPR010159 N-acyl-L-amino-acid amidohydrolase "; GO:0008152,GO:0005737 NbS00030883g0012.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.25|0.75|1|1|4|0|258; (*GB) gi|350538891|ref|NP_001234364.1| (e_value=4e-135) expansin precursor [Solanum lycopersicum];; (*SWP) sp|O80622|EXP15_ARATH (e_value=4e-125) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=3e-126) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc03g115890.2.1 (e_value=8e-138) genomic_reference:SL2.40ch03 gene_region:59540713-59542201 transcript_region:SL2.40ch03:59540713..59542201+ go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005199 NbS00030883g0011.1 protein AED:0.09 eAED:0.09 QI:660|1|1|1|1|1|2|405|515; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=0.0) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=3e-85) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=2e-86) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc03g115940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59566770-59569400 transcript_region:SL2.40ch03:59566770..59569400- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00030883g0013.1 protein AED:0.43 eAED:0.44 QI:0|0.66|0.25|1|0.33|0.25|4|0|205; (*GB) gi|224141007|ref|XP_002323867.1| (e_value=4e-101) predicted protein [Populus trichocarpa];; (*TAIR) AT3G29010.1 (e_value=2e-97) | Symbols: | Biotin/lipoate A/B protein ligase family | chr3:11006945-11007977 FORWARD LENGTH=262;; (*ITAG) Solyc06g065310.2.1 (e_value=2e-124) genomic_reference:SL2.40ch06 gene_region:37116097-37120621 transcript_region:SL2.40ch06:37116097..37120621- go_terms:GO:0006464 functional_description:"Lipoate protein ligase-like protein (AHRD V1 ***- Q9MBG4_ARATH); contains Interpro domain(s) IPR004143 Biotin/lipoate A/B protein ligase "; GO:0006464 NbS00041836g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|562; (*GB) gi|225423493|ref|XP_002274352.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera];; (*SWP) sp|Q9SIL5|PP165_ARATH (e_value=4e-125) Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1;; (*TAIR) AT2G20540.1 (e_value=3e-126) | Symbols: MEF21 | mitochondrial editing factor 21 | chr2:8844160-8845764 FORWARD LENGTH=534;; (*ITAG) Solyc04g005460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:318155-319747 transcript_region:SL2.40ch04:318155..319747- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00041836g0007.1 protein AED:0.19 eAED:0.19 QI:162|0.5|0.33|1|1|1|3|0|638; (*GB) gi|255542092|ref|XP_002512110.1| (e_value=0.0) Nucleotide pyrophosphatase/phosphodiesterase, putative [Ricinus communis];; (*SWP) sp|Q9LMG7|PPA2_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana GN=PAP2 PE=2 SV=1;; (*TAIR) AT1G13900.1 (e_value=0.0) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4753494-4755554 REVERSE LENGTH=656;; (*ITAG) Solyc04g005450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:310785-314269 transcript_region:SL2.40ch04:310785..314269- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 *-** B0WRM8_CULQU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00009566g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.75|0.33|0.75|4|0|841; (*GB) gi|208429106|gb|ACI26722.1| (e_value=0.0) receptor-like kinase [Nicotiana glutinosa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=1e-126) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=1e-127) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbC24152731g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|86; (*GB) gi|22128587|gb|AAM52339.1| (e_value=9e-25) fertility restorer [Petunia x hybrida];; (*ITAG) Solyc06g007740.1.1 (e_value=1e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00059814g0003.1 protein AED:0.12 eAED:0.12 QI:200|0.88|0.9|1|0.66|0.5|10|535|291; (*GB) gi|225464880|ref|XP_002273234.1| (e_value=4e-123) PREDICTED: uncharacterized protein LOC100262096 [Vitis vinifera];; (*TAIR) AT5G22340.1 (e_value=4e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:7394509-7396554 FORWARD LENGTH=323;; (*ITAG) Solyc11g068680.1.1 (e_value=1e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50402744-50406114 transcript_region:SL2.40ch11:50402744..50406114- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMR8_ARATH)"; NbS00041163g0003.1 protein AED:0.58 eAED:0.50 QI:0|0.5|0|0.66|1|1|3|0|79 NbS00010731g0004.1 protein AED:0.05 eAED:0.05 QI:47|0.5|0.66|1|1|1|3|170|302; (*GB) gi|225427169|ref|XP_002277674.1| (e_value=6e-60) PREDICTED: uncharacterized protein LOC100245547 [Vitis vinifera];; (*TAIR) AT4G17940.1 (e_value=6e-48) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9965787-9966778 FORWARD LENGTH=274;; (*ITAG) Solyc08g076730.2.1 (e_value=5e-127) genomic_reference:SL2.40ch08 gene_region:57847867-57849297 transcript_region:SL2.40ch08:57847867..57849297- go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00010731g0112.1 protein AED:0.20 eAED:0.20 QI:192|0.76|0.5|1|0.84|0.85|14|0|1083 NbS00010731g0113.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0.5|0.2|5|0|258 NbS00046595g0013.1 protein AED:0.00 eAED:0.00 QI:163|1|1|1|1|1|2|263|174; (*GB) gi|224111708|ref|XP_002315948.1| (e_value=4e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|P82412|RRP3_SPIOL (e_value=1e-55) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1;; (*TAIR) AT1G68590.2 (e_value=2e-57) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=163;; (*ITAG) Solyc05g009570.2.1 (e_value=2e-92) genomic_reference:SL2.40ch05 gene_region:3767465-3769326 transcript_region:SL2.40ch05:3767465..3769326- go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00046595g0010.1 protein AED:0.04 eAED:0.04 QI:55|1|1|1|1|1|6|270|225; (*GB) gi|224099357|ref|XP_002311452.1| (e_value=6e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FX64|HOP2_ARATH (e_value=1e-120) Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana GN=HOP2 PE=1 SV=1;; (*TAIR) AT1G13330.1 (e_value=1e-121) | Symbols: AHP2 | Arabidopsis Hop2 homolog | chr1:4568008-4569410 FORWARD LENGTH=226;; (*ITAG) Solyc05g009560.2.1 (e_value=3e-147) genomic_reference:SL2.40ch05 gene_region:3765181-3767193 transcript_region:SL2.40ch05:3765181..3767193- go_terms:GO:0046983 functional_description:"Homologous-pairing protein 2 homolog (AHRD V1 ***- C3KHP4_ANOFI); contains Interpro domain(s) IPR010776 Tat binding protein 1-interacting "; GO:0046983 NbS00046595g0012.1 protein AED:0.07 eAED:0.07 QI:275|0.75|1|1|0.25|0.2|5|244|429; (*GB) gi|359472697|ref|XP_002279060.2| (e_value=1e-89) PREDICTED: uncharacterized protein LOC100252495 [Vitis vinifera];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=4e-15) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT1G13340.1 (e_value=8e-62) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409;; (*ITAG) Solyc05g009550.2.1 (e_value=3e-168) genomic_reference:SL2.40ch05 gene_region:3762525-3764782 transcript_region:SL2.40ch05:3762525..3764782+ functional_description:"IST1 homolog (AHRD V1 *--- IST1_HUMAN); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00046595g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.4|0.33|1|0.6|0.66|6|0|474; (*GB) gi|225423931|ref|XP_002278994.1| (e_value=1e-155) PREDICTED: aluminum-activated malate transporter 9 [Vitis vinifera];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=1e-123) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=8e-125) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc05g009580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3773293-3777228 transcript_region:SL2.40ch05:3773293..3777228+ go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00046595g0001.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|247; (*GB) gi|113205399|gb|AAU90302.2| (e_value=4e-14) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g074530.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00054011g0001.1 protein AED:0.56 eAED:0.68 QI:30|0|0.33|0.66|1|1|3|0|61 NbC26194291g0001.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|1|1|2|0|125 NbS00024223g0012.1 protein AED:0.10 eAED:0.11 QI:0|1|0.84|1|0.91|0.84|13|0|504; (*GB) gi|359481929|ref|XP_002268831.2| (e_value=0.0) PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Vitis vinifera];; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=4e-40) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G27730.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472;; (*ITAG) Solyc09g008360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1823490-1828731 transcript_region:SL2.40ch09:1823490..1828731- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 *--- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00024223g0007.1 protein AED:0.09 eAED:0.09 QI:296|1|1|1|0.6|0.83|6|359|412; (*GB) gi|225441177|ref|XP_002268949.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera];; (*TAIR) AT2G36840.1 (e_value=0.0) | Symbols: | ACT-like superfamily protein | chr2:15451834-15453550 REVERSE LENGTH=410;; (*ITAG) Solyc09g008350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1817453-1822095 transcript_region:SL2.40ch09:1817453..1822095+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TMA2_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00024223g0010.1 protein AED:0.14 eAED:0.21 QI:0|0|0|1|0|0|3|0|417; (*GB) gi|297739974|emb|CBI30156.3| (e_value=1e-143) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=1e-127) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc10g083940.1.1 (e_value=2e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62966616-62968361 transcript_region:SL2.40ch10:62966616..62968361+ go_terms:GO:0055085 functional_description:"Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; GO:0055085 NbS00024223g0011.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|359481931|ref|XP_002268663.2| (e_value=5e-23) PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=3e-24) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc09g008370.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1835385-1837232 transcript_region:SL2.40ch09:1835385..1837232+ functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00004171g0014.1 protein AED:0.17 eAED:0.18 QI:25|0.81|0.76|1|0.81|0.76|17|234|675; (*GB) gi|359477374|ref|XP_002284013.2| (e_value=0.0) PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8R146|APEH_MOUSE (e_value=6e-71) Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=2;; (*TAIR) AT4G14570.1 (e_value=0.0) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc03g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:196973-204060 transcript_region:SL2.40ch03:196973..204060- go_terms:GO:0004252 functional_description:"Prolyl endopeptidase (AHRD V1 *-** C0NUP9_AJECG); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00004171g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|439; (*GB) gi|225432868|ref|XP_002283973.1| (e_value=3e-152) PREDICTED: CBL-interacting serine/threonine-protein kinase 7 [Vitis vinifera];; (*SWP) sp|Q9SUL7|CIPK4_ARATH (e_value=5e-136) CBL-interacting serine/threonine-protein kinase 4 OS=Arabidopsis thaliana GN=CIPK4 PE=1 SV=1;; (*TAIR) AT4G14580.1 (e_value=4e-137) | Symbols: CIPK4, SnRK3.3 | CBL-interacting protein kinase 4 | chr4:8367887-8369167 REVERSE LENGTH=426;; (*ITAG) Solyc03g005330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:194233-195519 transcript_region:SL2.40ch03:194233..195519+ go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 20 (AHRD V1 **** C4P7W9_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00004171g0007.1 protein AED:0.39 eAED:0.39 QI:0|0.4|0.5|0.66|0.8|0.66|6|566|93 NbS00004171g0013.1 protein AED:0.47 eAED:0.58 QI:242|0.66|0.75|1|0|0|4|0|68 NbS00031890g0021.1 protein AED:0.13 eAED:0.14 QI:0|0|0.5|1|0|0|2|0|125; (*GB) gi|22775562|dbj|BAC11949.1| (e_value=5e-56) phosphoprotein NtEPb1 [Nicotiana tabacum];; (*ITAG) Solyc02g093650.2.1 (e_value=1e-33) genomic_reference:SL2.40ch02 gene_region:49007532-49008190 transcript_region:SL2.40ch02:49007532..49008190+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00031890g0023.1 protein AED:0.25 eAED:0.33 QI:0|0.5|0.27|0.81|0.7|0.63|11|0|231; (*GB) gi|224141271|ref|XP_002323998.1| (e_value=1e-106) predicted protein [Populus trichocarpa];; (*SWP) sp|P57758|CTNS_ARATH (e_value=1e-99) Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1;; (*TAIR) AT5G40670.1 (e_value=1e-100) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270;; (*ITAG) Solyc02g093700.2.1 (e_value=5e-128) genomic_reference:SL2.40ch02 gene_region:49026605-49028469 transcript_region:SL2.40ch02:49026605..49028469+ go_terms:GO:0015184 functional_description:"Cystine transporter Cystinosin (AHRD V1 *-** Q2URL9_ASPOR); contains Interpro domain(s) IPR005282 Lysosomal cystine transporter "; GO:0015184 NbS00031890g0022.1 protein AED:0.25 eAED:0.34 QI:48|0.5|0.66|1|0.5|0.66|3|0|77; (*GB) gi|294461408|gb|ADE76265.1| (e_value=9e-20) unknown [Picea sitchensis];; (*TAIR) AT5G55850.1 (e_value=2e-18) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc02g093670.2.1 (e_value=9e-39) genomic_reference:SL2.40ch02 gene_region:49011572-49013000 transcript_region:SL2.40ch02:49011572..49013000+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- B6SJI8_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00031890g0012.1 protein AED:0.47 eAED:0.61 QI:0|0|0|0.66|1|1|3|0|72; (*GB) gi|77745450|gb|ABB02624.1| (e_value=7e-18) ribosomal protein S14-like [Solanum tuberosum];; (*SWP) sp|P19950|RS141_MAIZE (e_value=7e-18) 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1;; (*TAIR) AT3G11510.1 (e_value=2e-18) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc02g070570.2.1 (e_value=1e-20) genomic_reference:SL2.40ch02 gene_region:34881829-34884820 transcript_region:SL2.40ch02:34881829..34884820+ go_terms:GO:0003735,GO:0048027 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0003735,GO:0048027 NbS00031890g0009.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.33|1|1|3|0|368; (*ITAG) Solyc02g093660.1.1 (e_value=3e-140) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00031890g0025.1 protein AED:0.17 eAED:0.17 QI:1011|0.87|0.77|1|1|1|9|0|544; (*GB) gi|359490241|ref|XP_002268933.2| (e_value=0.0) PREDICTED: GTPase Der-like [Vitis vinifera];; (*SWP) sp|A5EI59|DER_BRASB (e_value=1e-85) GTPase Der OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=der PE=3 SV=1;; (*TAIR) AT5G39960.1 (e_value=0.0) | Symbols: | GTP binding;GTP binding | chr5:15994195-15996820 FORWARD LENGTH=621;; (*ITAG) Solyc10g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:704986-709412 transcript_region:SL2.40ch10:704986..709412- go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein engA (AHRD V1 **** A9TY56_PHYPA); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0043022,GO:0003924 NbS00031890g0019.1 protein AED:0.33 eAED:0.34 QI:0|1|0.5|1|1|1|4|0|375; (*GB) gi|225452226|ref|XP_002268368.1| (e_value=2e-139) PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Vitis vinifera];; (*SWP) sp|Q8N5M1|ATPF2_HUMAN (e_value=2e-23) ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1;; (*TAIR) AT5G40660.1 (e_value=1e-129) | Symbols: | ATP12 protein-related | chr5:16283650-16285161 REVERSE LENGTH=325;; (*ITAG) Solyc02g093690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49018673-49022176 transcript_region:SL2.40ch02:49018673..49022176- go_terms:GO:0005515 functional_description:"ATP12 ATPase (AHRD V1 ***- B6TXI2_MAIZE); contains Interpro domain(s) IPR011419 ATP12, ATPase F1F0-assembly protein "; GO:0005515 NbS00003282g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|3|181|696; (*GB) gi|225449038|ref|XP_002273590.1| (e_value=0.0) PREDICTED: auxin response factor 18 [Vitis vinifera];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc09g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1332643-1335760 transcript_region:SL2.40ch09:1332643..1335760- go_terms:GO:0003700,GO:0035198 functional_description:"Auxin response factor 3 (AHRD V1 **** A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0035198 NbS00003282g0004.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.2|1|1|5|0|88 NbS00019709g0011.1 protein AED:0.02 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|149; (*ITAG) Solyc03g097660.2.1 (e_value=2e-14) genomic_reference:SL2.40ch03 gene_region:53433559-53435695 transcript_region:SL2.40ch03:53433559..53435695+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019709g0016.1 protein AED:0.28 eAED:0.29 QI:255|0.78|0.6|1|0.78|0.8|15|0|408; (*GB) gi|357501349|ref|XP_003620963.1| (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta [Medicago truncatula];; (*SWP) sp|Q38799|ODPB_ARATH (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2;; (*TAIR) AT5G50850.1 (e_value=0.0) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc03g097680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53455935-53462816 transcript_region:SL2.40ch03:53455935..53462816+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00019709g0017.1 protein AED:0.13 eAED:0.13 QI:0|1|0.85|1|1|1|7|281|566; (*GB) gi|118483184|gb|ABK93496.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT5G50860.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:20693778-20696983 REVERSE LENGTH=580;; (*ITAG) Solyc03g097690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53463305-53469205 transcript_region:SL2.40ch03:53463305..53469205- go_terms:GO:0004693 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00019709g0019.1 protein AED:0.27 eAED:0.30 QI:0|0.28|0.37|1|0.28|0.25|8|0|1902; (*GB) gi|225456431|ref|XP_002284314.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247409 [Vitis vinifera];; (*TAIR) AT3G48770.1 (e_value=0.0) | Symbols: | DNA binding;ATP binding | chr3:18079261-18086817 REVERSE LENGTH=1899;; (*ITAG) Solyc03g097670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbC25793177g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|438; (*GB) gi|559237|gb|AAA98492.1| (e_value=1e-61) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=1e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00020691g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|225425023|ref|XP_002269495.1| (e_value=1e-65) PREDICTED: uncharacterized protein LOC100258132 [Vitis vinifera];; (*TAIR) AT3G30530.1 (e_value=2e-33) | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper 42 | chr3:12139512-12140033 FORWARD LENGTH=173;; (*ITAG) Solyc04g005170.1.1 (e_value=4e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:118047-118622 transcript_region:SL2.40ch04:118047..118622- go_terms:GO:0046982,GO:0042803 functional_description:"BZip transcription factor (AHRD V1 ***- Q9AT29_PHAVU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbC23407255g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|63; (*GB) gi|16215471|emb|CAC82999.1| (e_value=3e-37) calcium-dependent protein kinase 3 [Nicotiana tabacum];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=3e-35) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=2e-36) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc11g006370.1.1 (e_value=5e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1080169-1085490 transcript_region:SL2.40ch11:1080169..1085490+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q93YF3_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00056138g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|224084630|ref|XP_002307366.1| (e_value=9e-145) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64260.1 (e_value=2e-131) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc04g074470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58047154-58048083 transcript_region:SL2.40ch04:58047154..58048083+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00056138g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|147817651|emb|CAN62395.1| (e_value=8e-15) hypothetical protein VITISV_021306 [Vitis vinifera]; NbS00051434g0001.1 protein AED:0.21 eAED:0.22 QI:0|0.41|0.53|0.92|0.83|0.69|13|1116|699; (*GB) gi|357501297|ref|XP_003620937.1| (e_value=0.0) Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT1G05630.1 (e_value=0.0) | Symbols: AT5PTASE13, 5PTASE13 | Endonuclease/exonuclease/phosphatase family protein | chr1:1682483-1687153 FORWARD LENGTH=1170;; (*ITAG) Solyc12g096660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63821175-63829114 transcript_region:SL2.40ch12:63821175..63829114+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 *-*- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00051434g0012.1 protein AED:0.10 eAED:0.10 QI:914|1|1|1|1|1|3|546|574; (*GB) gi|359478231|ref|XP_002279889.2| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=1e-136) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc12g096670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63842032-63845331 transcript_region:SL2.40ch12:63842032..63845331- functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00012311g0018.1 protein AED:0.08 eAED:0.08 QI:179|0.8|0.76|1|0.8|0.71|21|305|1255; (*GB) gi|225462663|ref|XP_002266509.1| (e_value=0.0) PREDICTED: protein timeless homolog [Vitis vinifera];; (*TAIR) AT5G52910.1 (e_value=8e-150) | Symbols: ATIM | timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141;; (*ITAG) Solyc03g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2347943-2362320 transcript_region:SL2.40ch03:2347943..2362320- functional_description:"Topoisomerase 1-associated factor 1 (AHRD V1 *--- C9S978_VERA1); contains Interpro domain(s) IPR007725 Timeless C-terminal "; NbS00012311g0014.1 protein AED:0.27 eAED:0.27 QI:9|0.76|0.78|1|0.76|0.78|14|527|709; (*GB) gi|225462665|ref|XP_002264485.1| (e_value=0.0) PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FLW9|PKP2_ARATH (e_value=0.0) Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1;; (*TAIR) AT5G52920.1 (e_value=0.0) | Symbols: PKP1, PKP-BETA1, PKP2 | plastidic pyruvate kinase beta subunit 1 | chr5:21463680-21466612 FORWARD LENGTH=579;; (*ITAG) Solyc03g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2363561-2372504 transcript_region:SL2.40ch03:2363561..2372504- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A5BTB0_VITVI); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00012311g0019.1 protein AED:0.07 eAED:0.08 QI:0|0.8|0.66|1|0.8|0.66|6|0|874; (*GB) gi|255545116|ref|XP_002513619.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FLV4|Y5248_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1;; (*TAIR) AT5G24080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:8139334-8141014 REVERSE LENGTH=470;; (*ITAG) Solyc03g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2343464-2347272 transcript_region:SL2.40ch03:2343464..2347272+ go_terms:GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00028475g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.71|0.62|1|0.57|0.62|8|544|839; (*GB) gi|359493656|ref|XP_002282441.2| (e_value=0.0) PREDICTED: protein SPA1-RELATED 3-like [Vitis vinifera];; (*SWP) sp|Q9LJR3|SPA3_ARATH (e_value=0.0) Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1;; (*TAIR) AT1G53090.2 (e_value=0.0) | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-19786690 FORWARD LENGTH=794;; (*ITAG) Solyc12g013840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4630904-4638122 transcript_region:SL2.40ch12:4630904..4638122+ go_terms:GO:0006468 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0006468 NbS00028475g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|254; (*GB) gi|255585738|ref|XP_002533550.1| (e_value=3e-114) acetylglucosaminyltransferase, putative [Ricinus communis];; (*TAIR) AT4G27480.2 (e_value=2e-114) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc12g013850.1.1 (e_value=2e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4639057-4641430 transcript_region:SL2.40ch12:4639057..4641430- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00052783g0010.1 protein AED:0.20 eAED:0.21 QI:0|0.16|0.15|0.92|0.75|0.61|13|357|2242; (*GB) gi|359497035|ref|XP_002263860.2| (e_value=0.0) PREDICTED: cytochrome P450 93A1-like [Vitis vinifera];; (*SWP) sp|O64638|C76C3_ARATH (e_value=2e-91) Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2;; (*TAIR) AT4G12300.1 (e_value=4e-179) | Symbols: CYP706A4 | cytochrome P450, family 706, subfamily A, polypeptide 4 | chr4:7308016-7309692 REVERSE LENGTH=516;; (*ITAG) Solyc08g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60059507-60061451 transcript_region:SL2.40ch08:60059507..60061451+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbC25479165g0001.1 protein AED:0.00 eAED:0.00 QI:42|1|0.5|1|1|1|2|0|84; (*GB) gi|297740371|emb|CBI30553.3| (e_value=1e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=3e-29) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=6e-37) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00006225g0009.1 protein AED:0.08 eAED:0.08 QI:486|1|1|1|0.87|0.77|9|462|542; (*GB) gi|359473485|ref|XP_003631305.1| (e_value=1e-159) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera];; (*SWP) sp|Q9CAA9|BH049_ARATH (e_value=3e-90) Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=2e-92) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc01g010130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4870120-4873334 transcript_region:SL2.40ch01:4870120..4873334+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00006225g0010.1 protein AED:0.27 eAED:0.27 QI:146|0.77|0.84|1|0.77|0.73|19|0|732; (*GB) gi|260505494|gb|ACX42226.1| (e_value=0.0) heat shock protein 90 [Ipomoea nil];; (*SWP) sp|P36183|ENPL_HORVU (e_value=0.0) Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1;; (*TAIR) AT2G04030.1 (e_value=0.0) | Symbols: CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 | Chaperone protein htpG family protein | chr2:1281983-1285909 FORWARD LENGTH=780;; (*ITAG) Solyc05g010670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4883167-4891847 transcript_region:SL2.40ch05:4883167..4891847- go_terms:GO:0005524 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_MYXXD); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524 NbS00060273g0001.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|1|1|3|294|212; (*GB) gi|225430428|ref|XP_002285428.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100266438 [Vitis vinifera];; (*TAIR) AT5G11090.1 (e_value=7e-38) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc06g065900.2.1 (e_value=4e-55) genomic_reference:SL2.40ch06 gene_region:37689194-37690313 transcript_region:SL2.40ch06:37689194..37690313+ functional_description:"Serine-rich protein (AHRD V1 ***- Q8L8M8_ARATH)"; NbS00015907g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|307110175|gb|EFN58411.1| (e_value=3e-54) GTP-binding protein YPTC4 [Chlorella variabilis];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=1e-54) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=8e-56) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc06g060210.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00037113g0005.1 protein AED:0.20 eAED:0.20 QI:117|0.83|0.71|0.85|1|1|7|0|323; (*GB) gi|224121608|ref|XP_002330743.1| (e_value=3e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5E9N0|BYST_BOVIN (e_value=1e-83) Bystin OS=Bos taurus GN=BYSL PE=2 SV=1;; (*TAIR) AT1G31660.1 (e_value=1e-113) | Symbols: | CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444;; (*ITAG) Solyc07g056550.2.1 (e_value=1e-175) genomic_reference:SL2.40ch07 gene_region:61660092-61665125 transcript_region:SL2.40ch07:61660092..61665125+ go_terms:GO:0030515 functional_description:"Bystin (AHRD V1 ***- B5DGE9_SALSA); contains Interpro domain(s) IPR007955 Bystin "; GO:0030515 NbS00042606g0008.1 protein AED:0.13 eAED:0.13 QI:139|1|0.75|1|0.66|0.75|4|0|562; (*GB) gi|359484596|ref|XP_002281155.2| (e_value=1e-144) PREDICTED: uncharacterized protein LOC100266187 [Vitis vinifera];; (*TAIR) AT3G22440.1 (e_value=8e-76) | Symbols: | FRIGIDA-like protein | chr3:7959854-7961886 FORWARD LENGTH=532;; (*ITAG) Solyc11g071340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51937363-51942097 transcript_region:SL2.40ch11:51937363..51942097- functional_description:"ABI3-interacting protein 2 (Fragment) (AHRD V1 *-*- A7Y4P0_PINSY); contains Interpro domain(s) IPR012474 Frigida-like "; NbC25348596g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|0|2|0|119; (*GB) gi|296082178|emb|CBI21183.3| (e_value=2e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55680|Y005_SYNY3 (e_value=2e-31) Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0005 PE=3 SV=1;; (*TAIR) AT5G24970.1 (e_value=3e-48) | Symbols: | Protein kinase superfamily protein | chr5:8604358-8608663 REVERSE LENGTH=719;; (*ITAG) Solyc08g068920.2.1 (e_value=6e-66) genomic_reference:SL2.40ch08 gene_region:55197139-55214508 transcript_region:SL2.40ch08:55197139..55214508- functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00002248g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|473102|emb|CAA82271.1| (e_value=3e-68) beta-1,3-glucanase [Nicotiana tabacum];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=3e-28) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT5G56590.1 (e_value=3e-29) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22907521-22909436 FORWARD LENGTH=506;; (*ITAG) Solyc07g049370.2.1 (e_value=7e-29) genomic_reference:SL2.40ch07 gene_region:56967150-56969827 transcript_region:SL2.40ch07:56967150..56969827+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00042536g0003.1 protein AED:0.15 eAED:0.30 QI:0|0|0|1|0|0|4|0|213; (*GB) gi|357471451|ref|XP_003606010.1| (e_value=2e-68) NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula];; (*SWP) sp|P06254|NU1C_TOBAC (e_value=4e-67) NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3;; (*ITAG) ATCG01100.1 (e_value=2e-57) | Symbols: NDHA | NADH dehydrogenase family protein | chrC:119847-122009 REVERSE LENGTH=360;; (*ITAG) Solyc02g080280.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39126991-39131399 transcript_region:SL2.40ch02:39126991..39131399- go_terms:GO:0016020 functional_description:"NAD(P)H-quinone oxidoreductase subunit 1 (AHRD V1 ***- D3WAS2_AUCJA); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00021628g0011.1 protein AED:0.39 eAED:0.52 QI:205|0|0|1|0.33|0.75|4|481|27 NbS00021628g0012.1 protein AED:0.05 eAED:0.05 QI:360|0.9|1|1|0.9|0.81|11|180|485; (*GB) gi|349732085|ref|NP_001231830.1| (e_value=0.0) CLB1 [Solanum lycopersicum];; (*SWP) sp|Q5DTI8|ESYT3_MOUSE (e_value=9e-25) Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2;; (*TAIR) AT3G61050.2 (e_value=0.0) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc05g047710.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58339129-58346527 transcript_region:SL2.40ch05:58339129..58346527- go_terms:GO:0008289 functional_description:"Plant synaptotagmin (AHRD V1 **-- C5X3E4_SORBI); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00021628g0014.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|5|449|224; (*GB) gi|225453791|ref|XP_002275558.1| (e_value=1e-54) PREDICTED: uncharacterized protein LOC100252268 [Vitis vinifera];; (*TAIR) AT2G45520.1 (e_value=2e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr2:18755209-18756268 REVERSE LENGTH=205;; (*ITAG) Solyc05g048750.2.1 (e_value=7e-110) genomic_reference:SL2.40ch05 gene_region:58486637-58490924 transcript_region:SL2.40ch05:58486637..58490924- functional_description:"Unknown Protein (AHRD V1)"; NbS00021628g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|63; (*ITAG) Solyc04g039720.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30316967-30317527 transcript_region:SL2.40ch04:30316967..30317527- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00021628g0018.1 protein AED:0.26 eAED:0.26 QI:339|1|1|1|0.75|0.61|13|1917|252; (*GB) gi|122194125|sp|Q1W375.1|PMM_TOBAC (e_value=0.0) RecName: Full=Phosphomannomutase; AltName: Full=NtPMM;; (*SWP) sp|Q1W375|PMM_TOBAC (e_value=0.0) Phosphomannomutase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G45790.1 (e_value=3e-155) | Symbols: ATPMM, PMM | phosphomannomutase | chr2:18855876-18857753 FORWARD LENGTH=246;; (*ITAG) Solyc05g048760.2.1 (e_value=1e-169) genomic_reference:SL2.40ch05 gene_region:58550837-58554198 transcript_region:SL2.40ch05:58550837..58554198+ go_terms:GO:0004615 functional_description:"Phosphomannomutase 2"; GO:0004615 NbS00021628g0005.1 protein AED:0.50 eAED:0.77 QI:0|0|0.5|1|1|1|2|249|172; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-51) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc06g065250.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37076027-37077919 transcript_region:SL2.40ch06:37076027..37077919- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FFD3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00040330g0004.1 protein AED:0.03 eAED:0.03 QI:108|1|1|1|1|1|3|263|337; (*GB) gi|15227200|ref|NP_179828.1| (e_value=3e-180) peroxidase [Arabidopsis thaliana];; (*SWP) sp|Q9SJZ2|PER17_ARATH (e_value=0.0) Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1;; (*TAIR) AT2G22420.1 (e_value=0.0) | Symbols: | Peroxidase superfamily protein | chr2:9513341-9514484 FORWARD LENGTH=329;; (*ITAG) Solyc11g010120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3243625-3246066 transcript_region:SL2.40ch11:3243625..3246066+ go_terms:GO:0055114 functional_description:"Peroxidase 17 (AHRD V1 ***- D7LE03_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00045974g0003.1 protein AED:0.01 eAED:0.01 QI:350|1|1|1|1|1|2|991|157; (*GB) gi|21105748|gb|AAM34773.1|AF509873_1 (e_value=4e-103) nam-like protein 10 [Petunia x hybrida];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=4e-95) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=3e-96) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc06g060230.2.1 (e_value=3e-102) genomic_reference:SL2.40ch06 gene_region:34577474-34578909 transcript_region:SL2.40ch06:34577474..34578909- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GU14_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00041403g0003.1 protein AED:0.08 eAED:0.08 QI:78|0.73|0.75|0.93|0.46|0.5|16|113|638; (*GB) gi|302143772|emb|CBI22633.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q32PL8|CC111_DANRE (e_value=1e-60) Coiled-coil domain-containing protein 111 homolog OS=Danio rerio GN=ccdc111 PE=2 SV=1;; (*TAIR) AT5G52800.3 (e_value=0.0) | Symbols: | DNA primases | chr5:21396053-21399419 FORWARD LENGTH=614;; (*ITAG) Solyc12g044340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44712011-44722472 transcript_region:SL2.40ch12:44712011..44722472- go_terms:GO:0006260 functional_description:"Coiled-coil domain-containing protein 111 (AHRD V1 ***- CC111_MOUSE); contains Interpro domain(s) IPR004340 DNA primase, UL52/UL70 type, Herpesviridae "; GO:0006260 NbS00009855g0007.1 protein AED:0.41 eAED:0.51 QI:0|1|0|1|1|1|2|0|65; (*GB) gi|226531954|ref|NP_001151866.1| (e_value=2e-21) small nuclear ribonucleoprotein F [Zea mays];; (*SWP) sp|P62321|RUXF_XENLA (e_value=1e-20) Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1;; (*TAIR) AT4G30220.2 (e_value=2e-23) | Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=96;; (*ITAG) Solyc10g081370.1.1 (e_value=2e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61786900-61789542 transcript_region:SL2.40ch10:61786900..61789542+ go_terms:GO:0005634 functional_description:"Small nuclear ribonucleoprotein F (AHRD V1 **-- B6TPP2_MAIZE); contains Interpro domain(s) IPR016487 Small nuclear ribonucleoprotein SmF "; GO:0005634 NbS00009855g0008.1 protein AED:0.28 eAED:0.28 QI:200|1|0.9|1|1|1|10|0|915; (*GB) gi|225461822|ref|XP_002283705.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Vitis vinifera];; (*SWP) sp|Q9FPS4|UBP23_ARATH (e_value=6e-179) Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2;; (*TAIR) AT5G57990.1 (e_value=5e-180) | Symbols: UBP23 | ubiquitin-specific protease 23 | chr5:23470218-23473997 REVERSE LENGTH=859;; (*ITAG) Solyc07g005530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:421123-429027 transcript_region:SL2.40ch07:421123..429027+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- D7MNY5_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00009855g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.25|1|1|4|0|295; (*ITAG) Solyc01g017760.1.1 (e_value=7e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025533g0004.1 protein AED:0.12 eAED:0.19 QI:0|0.55|0.4|1|0.55|0.4|10|0|518; (*GB) gi|325977008|gb|ADZ48238.1| (e_value=0.0) lycopene epsilon cyclase [Nicotiana tabacum];; (*SWP) sp|O65837|LCYE_SOLLC (e_value=0.0) Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1;; (*TAIR) AT5G57030.1 (e_value=0.0) | Symbols: LUT2 | Lycopene beta/epsilon cyclase protein | chr5:23077398-23079818 FORWARD LENGTH=524;; (*ITAG) Solyc12g008980.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2285372-2290327 transcript_region:SL2.40ch12:2285372..2290327+ go_terms:GO:0045436,GO:0045435 functional_description:"Lycopene epsilon cyclase"; GO:0045436,GO:0045435 NbS00040727g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|558; (*GB) gi|225439994|ref|XP_002276233.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g03250 [Vitis vinifera];; (*SWP) sp|Q9LYW0|Y5325_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1;; (*TAIR) AT5G03250.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:774591-776855 FORWARD LENGTH=592;; (*ITAG) Solyc09g007820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1348239-1351133 transcript_region:SL2.40ch09:1348239..1351133+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00056153g0003.1 protein AED:0.07 eAED:0.07 QI:485|0.83|0.71|1|0.66|0.57|7|401|323; (*GB) gi|255568343|ref|XP_002525146.1| (e_value=7e-109) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=4e-19) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT2G42380.2 (e_value=3e-94) | Symbols: ATBZIP34, BZIP34 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17647205-17648660 REVERSE LENGTH=321;; (*ITAG) Solyc07g053450.2.1 (e_value=3e-117) genomic_reference:SL2.40ch07 gene_region:59219093-59221036 transcript_region:SL2.40ch07:59219093..59221036- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 **** D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0003677 NbS00059102g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.84|1|0.70|0.8|25|116|1185; (*GB) gi|225431683|ref|XP_002264260.1| (e_value=0.0) PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera];; (*SWP) sp|A2BGR3|ERC6L_DANRE (e_value=8e-126) DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1;; (*TAIR) AT5G63950.1 (e_value=0.0) | Symbols: CHR24 | chromatin remodeling 24 | chr5:25592160-25598405 REVERSE LENGTH=1090;; (*ITAG) Solyc01g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69804247-69818171 transcript_region:SL2.40ch01:69804247..69818171- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00025953g0003.1 protein AED:0.05 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|175; (*GB) gi|294818247|gb|ADF42571.1| (e_value=5e-107) flowering locus T [Petunia x hybrida];; (*SWP) sp|Q9SXZ2|FT_ARATH (e_value=5e-85) Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2;; (*TAIR) AT1G65480.1 (e_value=4e-86) | Symbols: FT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:24331510-24333689 FORWARD LENGTH=175;; (*ITAG) Solyc11g008640.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2823863-2826262 transcript_region:SL2.40ch11:2823863..2826262- functional_description:"Flowering locus T (AHRD V1 **-- D5LM18_PETHY); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; NbS00048006g0001.1 protein AED:0.09 eAED:0.10 QI:282|0|0.5|1|0|0.5|2|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00048006g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|224119730|ref|XP_002318148.1| (e_value=2e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=2e-126) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072830.1.1 (e_value=5e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53108033-53108953 transcript_region:SL2.40ch11:53108033..53108953+ go_terms:GO:0005975 functional_description:"Chitinase 2 (AHRD V1 ***- B6U7J7_MAIZE); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00058266g0003.1 protein AED:0.37 eAED:0.37 QI:63|1|0.5|1|1|1|2|26|114; (*GB) gi|359474997|ref|XP_002278409.2| (e_value=3e-52) PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera];; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=5e-49) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=4e-50) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=1e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00022598g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.6|1|0.25|0.4|5|160|469; (*GB) gi|224118680|ref|XP_002331421.1| (e_value=4e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q940M4|OCT7_ARATH (e_value=7e-141) Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1;; (*TAIR) AT3G13050.1 (e_value=5e-142) | Symbols: | Major facilitator superfamily protein | chr3:4176866-4178868 FORWARD LENGTH=500;; (*ITAG) Solyc07g042900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53752300-53758204 transcript_region:SL2.40ch07:53752300..53758204+ go_terms:GO:0015101 functional_description:"Major facilitator family transporter (AHRD V1 **-* C9KLG5_9FIRM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015101 NbS00022598g0010.1 protein AED:0.28 eAED:0.29 QI:0|0.8|0.85|1|0.85|0.85|21|509|773; (*GB) gi|359483090|ref|XP_002274115.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255062 [Vitis vinifera];; (*TAIR) AT5G58100.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23507828-23514863 FORWARD LENGTH=945;; (*ITAG) Solyc07g042910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53758585-53795215 transcript_region:SL2.40ch07:53758585..53795215- functional_description:"Genomic DNA chromosome 5 TAC clone K21L19 (AHRD V1 **-- Q9FGT4_ARATH)"; NbS00022598g0011.1 protein AED:0.25 eAED:0.62 QI:9|0|0.33|0.66|1|0.66|3|0|80; (*GB) gi|359483090|ref|XP_002274115.2| (e_value=5e-17) PREDICTED: uncharacterized protein LOC100255062 [Vitis vinifera];; (*TAIR) AT5G58100.1 (e_value=4e-16) | Symbols: | unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23507828-23514863 FORWARD LENGTH=945;; (*ITAG) Solyc07g042910.2.1 (e_value=9e-28) genomic_reference:SL2.40ch07 gene_region:53758585-53795215 transcript_region:SL2.40ch07:53758585..53795215- functional_description:"Genomic DNA chromosome 5 TAC clone K21L19 (AHRD V1 **-- Q9FGT4_ARATH)"; NbS00009864g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|200; (*GB) gi|224059040|ref|XP_002299687.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80520.1 (e_value=8e-44) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:30276481-30277059 FORWARD LENGTH=192;; (*ITAG) Solyc03g117310.1.1 (e_value=8e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60531877-60532509 transcript_region:SL2.40ch03:60531877..60532509- functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00009864g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|3|0|358; (*GB) gi|296086240|emb|CBI31681.3| (e_value=2e-67) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=2e-57) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=1e-58) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc06g068340.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38728981-38730819 transcript_region:SL2.40ch06:38728981..38730819+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 **-- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00059429g0003.1 protein AED:0.15 eAED:0.15 QI:120|0.75|1|1|0.75|0.6|5|554|366; (*GB) gi|386870479|gb|AFJ42570.1| (e_value=0.0) beta-actin [Sesamum indicum];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc05g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63549262-63552429 transcript_region:SL2.40ch05:63549262..63552429- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00020383g0002.1 protein AED:0.09 eAED:0.09 QI:1242|1|0.83|1|0|0.16|6|1154|134 NbS00020383g0008.1 protein AED:0.20 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|348; (*GB) gi|224059634|ref|XP_002299944.1| (e_value=3e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXV2|MYB46_ARATH (e_value=1e-65) Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1;; (*TAIR) AT3G08500.1 (e_value=4e-71) | Symbols: MYB83, AtMYB83 | myb domain protein 83 | chr3:2576958-2578072 REVERSE LENGTH=343;; (*ITAG) Solyc01g087130.2.1 (e_value=1e-127) genomic_reference:SL2.40ch01 gene_region:73815709-73818027 transcript_region:SL2.40ch01:73815709..73818027+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q70KC5_EUCGU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00060918g0008.1 protein AED:0.16 eAED:0.26 QI:0|0|0|1|0.66|0.75|4|0|428; (*GB) gi|356522320|ref|XP_003529795.1| (e_value=1e-38) PREDICTED: LOW QUALITY PROTEIN: putative UPF0481 protein At3g02645-like [Glycine max];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=3e-27) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=2e-28) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc07g006930.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1770787-1772328 transcript_region:SL2.40ch07:1770787..1772328+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 *--- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00007321g0011.1 protein AED:0.07 eAED:0.16 QI:0|0.33|0|0.5|1|1|4|0|149; (*GB) gi|313474112|dbj|BAJ40866.1| (e_value=1e-40) bHLH transcriptional factor [Coptis japonica];; (*SWP) sp|Q8L467|BH104_ARATH (e_value=3e-36) Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1;; (*TAIR) AT4G14410.2 (e_value=2e-37) | Symbols: bHLH104 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:8300418-8301503 FORWARD LENGTH=277;; (*ITAG) Solyc09g089870.2.1 (e_value=1e-51) genomic_reference:SL2.40ch09 gene_region:64838719-64843480 transcript_region:SL2.40ch09:64838719..64843480- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKE6_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00007321g0010.1 protein AED:0.31 eAED:0.31 QI:384|0.2|0.33|1|0.8|1|6|0|490; (*GB) gi|225433017|ref|XP_002284642.1| (e_value=1e-135) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=6e-114) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=4e-115) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010020.2.1 (e_value=4e-138) genomic_reference:SL2.40ch09 gene_region:3447416-3449839 transcript_region:SL2.40ch09:3447416..3449839- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00020062g0012.1 protein AED:0.20 eAED:0.20 QI:213|1|0.75|1|1|0.75|4|0|491; (*GB) gi|255565350|ref|XP_002523666.1| (e_value=5e-106) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G53645.1 (e_value=1e-90) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:20026434-20028587 REVERSE LENGTH=523;; (*ITAG) Solyc01g098030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80404001-80408717 transcript_region:SL2.40ch01:80404001..80408717+ functional_description:"Contains similarity to RNA-binding protein from Arabidopsis thaliana gi|2129727 and contains RNA recognition PF|00076 domain (AHRD V1 *-*- Q8LA02_ARATH)"; NbS00020062g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|149; (*ITAG) Solyc01g098070.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:80428282-80428749 transcript_region:SL2.40ch01:80428282..80428749- go_terms:GO:0005634 functional_description:"MADS-box family protein (AHRD V1 *-*- D7LH07_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00020062g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225451207|ref|XP_002271613.1| (e_value=4e-60) PREDICTED: uncharacterized N-acetyltransferase p20-like [Vitis vinifera];; (*TAIR) AT3G22560.1 (e_value=2e-44) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175;; (*ITAG) Solyc01g098020.2.1 (e_value=7e-83) genomic_reference:SL2.40ch01 gene_region:80402878-80403598 transcript_region:SL2.40ch01:80402878..80403598- go_terms:GO:0008152 functional_description:"Acetyltransferase GNAT family protein expressed (AHRD V1 ***- Q75GC2_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00020062g0011.1 protein AED:0.24 eAED:0.24 QI:173|1|0.5|1|1|1|2|0|329; (*GB) gi|224131386|ref|XP_002328526.1| (e_value=4e-166) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05100.1 (e_value=2e-156) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:1424155-1425667 FORWARD LENGTH=336;; (*ITAG) Solyc01g098040.2.1 (e_value=1e-178) genomic_reference:SL2.40ch01 gene_region:80409336-80411929 transcript_region:SL2.40ch01:80409336..80411929- functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D5C2M0_NITHN); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00020062g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.75|1|1|4|0|284; (*GB) gi|224131358|ref|XP_002328519.1| (e_value=4e-54) hypothetical protein POPTRDRAFT_294882 [Populus trichocarpa];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=6e-53) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=4e-54) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=1e-48) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00061022g0004.1 protein AED:0.30 eAED:0.30 QI:111|1|0.85|1|0.66|0.85|7|0|221; (*GB) gi|296088995|emb|CBI38698.3| (e_value=2e-129) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MAM1|CIPK9_ARATH (e_value=5e-128) CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2;; (*TAIR) AT1G01140.2 (e_value=3e-129) | Symbols: CIPK9, PKS6 | CBL-interacting protein kinase 9 | chr1:64398-67512 REVERSE LENGTH=449;; (*ITAG) Solyc05g047600.2.1 (e_value=3e-143) genomic_reference:SL2.40ch05 gene_region:58249286-58253191 transcript_region:SL2.40ch05:58249286..58253191- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 12 (AHRD V1 ***- A0MNJ9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00016905g0008.1 protein AED:0.18 eAED:0.18 QI:222|0.91|0.61|1|0.83|0.76|13|0|1219; (*GB) gi|359480715|ref|XP_002276278.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase RKP-like [Vitis vinifera];; (*SWP) sp|Q9SIZ8|RKP_ARATH (e_value=0.0) E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2;; (*TAIR) AT2G22010.1 (e_value=0.0) | Symbols: RKP | related to KPC1 | chr2:9363946-9368828 REVERSE LENGTH=1280;; (*ITAG) Solyc04g054140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50936756-50946941 transcript_region:SL2.40ch04:50936756..50946941- go_terms:GO:0008270 functional_description:"Ryanodine receptor (AHRD V1 *--- P91905_CAEEL); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008270 NbS00016905g0003.1 protein AED:0.34 eAED:0.73 QI:0|1|0.5|1|0|0|2|425|318 NbS00040925g0007.1 protein AED:0.28 eAED:0.28 QI:84|1|1|1|1|1|9|595|233; (*GB) gi|330318613|gb|AEC10971.1| (e_value=7e-66) hypothetical protein [Camellia sinensis];; (*SWP) sp|Q7NDP0|TIG_GLOVI (e_value=8e-12) Trigger factor OS=Gloeobacter violaceus (strain PCC 7421) GN=tig PE=3 SV=1;; (*TAIR) AT2G30695.2 (e_value=1e-51) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13079269-13081095 REVERSE LENGTH=199;; (*ITAG) Solyc06g074900.1.1 (e_value=5e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:42790702-42791352 transcript_region:SL2.40ch06:42790702..42791352+ go_terms:GO:0015031 functional_description:"Trigger factor (AHRD V1 *-*- B7KBH9_CYAP7); contains Interpro domain(s) IPR008881 Trigger factor, ribosome-binding, bacterial "; GO:0015031 NbS00040925g0010.1 protein AED:0.27 eAED:0.38 QI:0|0.75|0.6|1|0|0|5|0|136; (*GB) gi|296085177|emb|CBI28672.3| (e_value=5e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G38430.1 (e_value=1e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16092950-16094810 REVERSE LENGTH=393;; (*ITAG) Solyc04g050920.2.1 (e_value=2e-37) genomic_reference:SL2.40ch04 gene_region:48128774-48132067 transcript_region:SL2.40ch04:48128774..48132067+ go_terms:GO:0006810 functional_description:"Os02g0504100 protein (Fragment) (AHRD V1 *-*- Q0E114_ORYSJ)"; GO:0006810 NbS00040925g0008.1 protein AED:0.09 eAED:0.20 QI:0|0|0|1|0|0|5|0|247; (*GB) gi|225465569|ref|XP_002263468.1| (e_value=3e-61) PREDICTED: uncharacterized protein LOC100263054 [Vitis vinifera];; (*TAIR) AT5G18490.1 (e_value=1e-57) | Symbols: | Plant protein of unknown function (DUF946) | chr5:6134275-6136554 REVERSE LENGTH=553;; (*ITAG) Solyc05g055910.2.1 (e_value=4e-77) genomic_reference:SL2.40ch05 gene_region:64508467-64511290 transcript_region:SL2.40ch05:64508467..64511290- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00011304g0014.1 protein AED:0.14 eAED:0.14 QI:87|0.66|0.75|1|1|1|4|310|453; (*GB) gi|211906466|gb|ACJ11726.1| (e_value=0.0) serine hydroxymethyltransferase [Gossypium hirsutum];; (*SWP) sp|Q54Z26|GLYC1_DICDI (e_value=0.0) Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1;; (*TAIR) AT4G13930.1 (e_value=0.0) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471;; (*ITAG) Solyc05g053810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62993932-62998448 transcript_region:SL2.40ch05:62993932..62998448- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** D2D306_GOSHI); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00011304g0001.1 protein AED:0.17 eAED:0.17 QI:173|0|0.5|1|0|0.5|2|0|145; (*GB) gi|225447254|ref|XP_002272923.1| (e_value=2e-58) PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera];; (*SWP) sp|Q8CH62|ORAV1_MOUSE (e_value=9e-19) Oral cancer-overexpressed protein 1 homolog OS=Mus musculus GN=Oraov1 PE=2 SV=1;; (*TAIR) AT2G20830.2 (e_value=3e-32) | Symbols: | transferases;folic acid binding | chr2:8968370-8970479 REVERSE LENGTH=431;; (*ITAG) Solyc07g064840.1.1 (e_value=3e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64060642-64061079 transcript_region:SL2.40ch07:64060642..64061079+ functional_description:"Oral cancer overexpressed protein 1 (AHRD V1 ***- B6SJ47_MAIZE); contains Interpro domain(s) IPR013179 Protein of unknown function DUF1715, eukaryotic "; NbS00011304g0015.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0.33|0.25|4|0|444; (*GB) gi|81075407|gb|ABB55380.1| (e_value=0.0) S-adenosyl-L-homocysteine hydrolase-like [Solanum tuberosum];; (*SWP) sp|P68173|SAHH_TOBAC (e_value=0.0) Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1;; (*TAIR) AT4G13940.1 (e_value=0.0) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485;; (*ITAG) Solyc12g098500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64330129-64332305 transcript_region:SL2.40ch12:64330129..64332305+ go_terms:GO:0006730,GO:0008152 functional_description:"Adenosylhomocysteinase (AHRD V1 ***- A1KYB0_TOBAC); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0006730,GO:0008152 NbS00011304g0009.1 protein AED:0.28 eAED:0.28 QI:0|0|0.33|0.66|1|1|3|54|121; (*GB) gi|147772258|emb|CAN60638.1| (e_value=7e-14) hypothetical protein VITISV_022224 [Vitis vinifera];; (*TAIR) AT2G31970.1 (e_value=4e-12) | Symbols: RAD50, ATRAD50 | DNA repair-recombination protein (RAD50) | chr2:13600657-13608815 FORWARD LENGTH=1316;; (*ITAG) Solyc05g053800.2.1 (e_value=4e-21) genomic_reference:SL2.40ch05 gene_region:62969281-62993468 transcript_region:SL2.40ch05:62969281..62993468+ go_terms:GO:0030674 functional_description:"DNA repair protein Rad50 (AHRD V1 ***- A8IE27_TRITU); contains Interpro domain(s) IPR004584 Recombination/repair protein Rad50 "; GO:0030674 NbS00013101g0006.1 protein AED:0.14 eAED:0.16 QI:515|0.91|0.84|1|0.91|0.92|25|220|1180; (*GB) gi|225427728|ref|XP_002265593.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253714 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=3e-109) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G39050.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc11g044880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36299654-36312937 transcript_region:SL2.40ch11:36299654..36312937+ go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00028460g0001.1 protein AED:0.24 eAED:0.24 QI:801|0.75|0.6|1|1|1|5|0|173; (*GB) gi|90823167|gb|ABE01085.1| (e_value=4e-66) BTF3 [Nicotiana benthamiana];; (*SWP) sp|Q6PC91|BT3L4_DANRE (e_value=3e-30) Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1;; (*TAIR) AT1G73230.1 (e_value=2e-59) | Symbols: | Nascent polypeptide-associated complex NAC | chr1:27540506-27541364 REVERSE LENGTH=165;; (*ITAG) Solyc07g008720.2.1 (e_value=9e-65) genomic_reference:SL2.40ch07 gene_region:3694316-3696017 transcript_region:SL2.40ch07:3694316..3696017+ go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex subunit beta (AHRD V1 **-- B2W6E2_PYRTR); contains Interpro domain(s) IPR002715 Nascent polypeptide-associated complex NAC "; GO:0051082 NbS00028460g0008.1 protein AED:0.13 eAED:0.13 QI:362|0.91|0.76|0.92|0.58|0.61|13|0|703; (*GB) gi|225470662|ref|XP_002269263.1| (e_value=0.0) PREDICTED: pathogenesis-related homeodomain protein [Vitis vinifera];; (*SWP) sp|P48785|PRH_ARATH (e_value=5e-95) Pathogenesis-related homeodomain protein OS=Arabidopsis thaliana GN=PRH PE=2 SV=1;; (*TAIR) AT4G29940.2 (e_value=3e-96) | Symbols: PRHA | pathogenesis related homeodomain protein A | chr4:14648346-14652710 REVERSE LENGTH=769;; (*ITAG) Solyc07g008730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3696781-3705483 transcript_region:SL2.40ch07:3696781..3705483- go_terms:GO:0008270,GO:0006355,GO:0045449,GO:0005622 functional_description:"Pathogenesis-related homeodomain protein (AHRD V1 *--- PRH_ARATH); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270,GO:0006355,GO:0045449,GO:0005622 NbS00046816g0005.1 protein AED:0.31 eAED:0.31 QI:624|0.75|0.77|1|0.62|0.33|9|503|121; (*GB) gi|351721605|ref|NP_001236447.1| (e_value=8e-49) uncharacterized protein LOC100500330 [Glycine max];; (*TAIR) AT3G47650.1 (e_value=4e-39) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr3:17569576-17570262 FORWARD LENGTH=136;; (*ITAG) Solyc12g009440.1.1 (e_value=4e-69) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2711259-2714105 transcript_region:SL2.40ch12:2711259..2714105+ go_terms:GO:0006457 functional_description:"Bundle-sheath defective protein 2 family (AHRD V1 ***- D7LRE2_ARALY); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbC25509266g0003.1 protein AED:0.34 eAED:0.34 QI:64|1|0|1|1|0.5|2|0|83; (*GB) gi|118488004|gb|ABK95823.1| (e_value=2e-12) unknown [Populus trichocarpa]; NbS00007070g0009.1 protein AED:0.21 eAED:0.21 QI:415|0.75|0.88|0.88|0.87|0.88|9|0|275; (*GB) gi|257815169|gb|ACV69976.1| (e_value=0.0) NAD-dependent glyceraldehyde 3-P dehydrogenase [Solanum chacoense];; (*SWP) sp|P26520|G3PC_PETHY (e_value=0.0) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1;; (*TAIR) AT1G13440.2 (e_value=2e-177) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc06g071920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40698421-40702286 transcript_region:SL2.40ch06:40698421..40702286- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00007070g0220.1 protein AED:0.18 eAED:0.20 QI:0|0.88|0.8|1|0.88|0.8|10|0|295 NbS00007070g0219.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.8|0.9|0.88|0.9|10|0|305 NbS00007070g0216.1 protein AED:0.23 eAED:0.23 QI:237|0.66|0.75|1|0.33|0.25|4|252|109 NbS00007070g0204.1 protein AED:0.24 eAED:0.32 QI:0|1|0.33|1|1|1|3|0|137 NbS00007070g0218.1 protein AED:0.06 eAED:0.06 QI:221|0.71|0.62|1|0.85|0.87|8|247|496 NbS00042698g0002.1 protein AED:0.01 eAED:0.01 QI:47|1|1|1|1|0.66|3|216|506; (*GB) gi|225434845|ref|XP_002280577.1| (e_value=2e-164) PREDICTED: uncharacterized protein LOC100244977 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=1e-135) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc12g099730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65090461-65092836 transcript_region:SL2.40ch12:65090461..65092836- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00017695g0006.1 protein AED:0.06 eAED:0.06 QI:208|1|1|1|0.83|0.85|7|479|475; (*GB) gi|224122296|ref|XP_002330588.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKT8|COX15_ARATH (e_value=0.0) Cytochrome c oxidase assembly protein COX15 OS=Arabidopsis thaliana GN=COX15 PE=2 SV=1;; (*TAIR) AT5G56090.1 (e_value=0.0) | Symbols: COX15 | cytochrome c oxidase 15 | chr5:22714634-22716605 FORWARD LENGTH=457;; (*ITAG) Solyc11g007000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1492033-1495752 transcript_region:SL2.40ch11:1492033..1495752+ go_terms:GO:0009055 functional_description:"Heme A synthase (AHRD V1 ***- C6MFW4_9PROT); contains Interpro domain(s) IPR003780 Cytochrome oxidase assembly "; GO:0009055 NbS00017695g0007.1 protein AED:0.29 eAED:0.70 QI:0|0|0|1|0|0|2|0|102 NbS00000891g0006.1 protein AED:0.12 eAED:0.12 QI:222|1|1|1|1|1|3|159|605; (*GB) gi|365222860|gb|AEW69782.1| (e_value=0.0) Hop-interacting protein THI007 [Solanum lycopersicum];; (*SWP) sp|Q7TNH6|NPHP3_MOUSE (e_value=9e-11) Nephrocystin-3 OS=Mus musculus GN=Nphp3 PE=1 SV=2;; (*TAIR) AT4G10840.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:6656614-6659033 FORWARD LENGTH=609;; (*ITAG) Solyc00g082150.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:15059636-15061824 transcript_region:SL2.40ch00:15059636..15061824- go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 **-- B6SKU4_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00000891g0007.1 protein AED:0.23 eAED:0.24 QI:0|0.75|0.6|1|1|1|5|0|578; (*GB) gi|147795448|emb|CAN65860.1| (e_value=0.0) hypothetical protein VITISV_014849 [Vitis vinifera];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=3e-139) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=3e-140) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc08g082810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62645836-62651991 transcript_region:SL2.40ch08:62645836..62651991- go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** B9RWS7_RICCO); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00038670g0006.1 protein AED:0.07 eAED:0.07 QI:138|1|0.88|1|1|1|9|355|513; (*GB) gi|27544012|dbj|BAC54830.1| (e_value=0.0) vacuolar processing enzyme-3 [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=0.0) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc12g095910.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63354423-63359472 transcript_region:SL2.40ch12:63354423..63359472+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-3 (AHRD V1 **-- Q852T0_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00038670g0009.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.5|1|0|2|0|130; (*ITAG) Solyc12g095940.1.1 (e_value=2e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63371164-63371550 transcript_region:SL2.40ch12:63371164..63371550+ functional_description:"Os03g0701550 protein (Fragment) (AHRD V1 *-*- C7IZD5_ORYSJ); contains Interpro domain(s) IPR013885 Protein of unknown function DUF1764, eukaryotic "; NbS00024229g0011.1 protein AED:0.33 eAED:0.35 QI:0|0.75|0.53|1|0.5|0.61|13|0|729; (*GB) gi|255562613|ref|XP_002522312.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT3G50590.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00024229g0013.1 protein AED:0.45 eAED:0.46 QI:0|0.33|0|1|0.66|0.75|4|0|249; (*GB) gi|255562613|ref|XP_002522312.1| (e_value=2e-64) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT3G50590.1 (e_value=2e-50) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=3e-117) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00024229g0002.1 protein AED:0.46 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|255562613|ref|XP_002522312.1| (e_value=7e-96) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT3G50590.1 (e_value=2e-90) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=8e-105) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00024229g0014.1 protein AED:0.34 eAED:0.41 QI:0|0.44|0.2|1|0.22|0.4|10|0|341; (*GB) gi|224094414|ref|XP_002310156.1| (e_value=3e-89) predicted protein [Populus trichocarpa];; (*TAIR) AT4G37080.1 (e_value=2e-81) | Symbols: | Protein of unknown function, DUF547 | chr4:17474205-17476716 FORWARD LENGTH=597;; (*ITAG) Solyc02g090580.2.1 (e_value=4e-108) genomic_reference:SL2.40ch02 gene_region:46702603-46706286 transcript_region:SL2.40ch02:46702603..46706286- functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00011688g0013.1 protein AED:0.08 eAED:0.08 QI:54|0.87|0.77|0.88|1|1|9|191|455; (*GB) gi|147784740|emb|CAN74796.1| (e_value=0.0) hypothetical protein VITISV_000290 [Vitis vinifera];; (*SWP) sp|Q5NVF9|TCPG_PONAB (e_value=0.0) T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1;; (*TAIR) AT5G26360.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00011688g0004.1 protein AED:0.22 eAED:0.22 QI:574|0.8|0.5|1|0.6|0.5|6|0|477; (*GB) gi|225463171|ref|XP_002267329.1| (e_value=4e-111) PREDICTED: uncharacterized protein LOC100263151 [Vitis vinifera];; (*TAIR) AT5G23520.1 (e_value=8e-83) | Symbols: | smr (Small MutS Related) domain-containing protein | chr5:7929591-7931296 REVERSE LENGTH=435;; (*ITAG) Solyc05g056320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64800614-64804103 transcript_region:SL2.40ch05:64800614..64804103- functional_description:"CCCH zinc finger and SMR domain-containing protein (AHRD V1 *--- C1G3N1_PARBD); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00011688g0001.1 protein AED:0.29 eAED:0.31 QI:2793|0.71|0.75|1|0.85|0.75|8|0|268; (*GB) gi|359480929|ref|XP_002267563.2| (e_value=6e-101) PREDICTED: uncharacterized protein LOC100259729 [Vitis vinifera];; (*TAIR) AT5G08450.3 (e_value=8e-91) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918;; (*ITAG) Solyc05g056340.2.1 (e_value=2e-110) genomic_reference:SL2.40ch05 gene_region:64819036-64832773 transcript_region:SL2.40ch05:64819036..64832773- functional_description:"RXT3-like protein C1259.07 (AHRD V1 *-*- YC57_SCHPO); contains Interpro domain(s) IPR013951 Histone deacetylation protein Rxt3 "; NbS00011688g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|224077670|ref|XP_002305354.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08450.3 (e_value=2e-20) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918;; (*ITAG) Solyc05g056340.2.1 (e_value=1e-164) genomic_reference:SL2.40ch05 gene_region:64819036-64832773 transcript_region:SL2.40ch05:64819036..64832773- functional_description:"RXT3-like protein C1259.07 (AHRD V1 *-*- YC57_SCHPO); contains Interpro domain(s) IPR013951 Histone deacetylation protein Rxt3 "; NbS00011688g0005.1 protein AED:0.54 eAED:0.54 QI:0|0.66|0.5|0.75|1|1|4|143|198; (*GB) gi|359480929|ref|XP_002267563.2| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100259729 [Vitis vinifera];; (*TAIR) AT5G08450.3 (e_value=2e-54) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink). | chr5:2727970-2732572 REVERSE LENGTH=918;; (*ITAG) Solyc05g056340.2.1 (e_value=3e-77) genomic_reference:SL2.40ch05 gene_region:64819036-64832773 transcript_region:SL2.40ch05:64819036..64832773- functional_description:"RXT3-like protein C1259.07 (AHRD V1 *-*- YC57_SCHPO); contains Interpro domain(s) IPR013951 Histone deacetylation protein Rxt3 "; NbS00019932g0009.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.4|0.8|0.75|0.6|5|0|192; (*GB) gi|225468779|ref|XP_002262663.1| (e_value=4e-45) PREDICTED: uncharacterized protein LOC100246586 [Vitis vinifera];; (*TAIR) AT5G48655.3 (e_value=6e-23) | Symbols: | RING/U-box superfamily protein | chr5:19731575-19732486 REVERSE LENGTH=203;; (*ITAG) Solyc09g059450.2.1 (e_value=7e-54) genomic_reference:SL2.40ch09 gene_region:50062176-50065717 transcript_region:SL2.40ch09:50062176..50065717+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023716g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|163; (*GB) gi|12331298|emb|CAC24711.1| (e_value=2e-66) cytochrome P450 [Solanum tuberosum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-67) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT4G36220.1 (e_value=6e-32) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc10g087030.1.1 (e_value=2e-84) genomic_reference:SL2.40ch10 gene_region:63369478-63372279 transcript_region:SL2.40ch10:63369478..63372279+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00030110g0004.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|1|6|0|589; (*GB) gi|2497541|sp|Q40545.1|KPYA_TOBAC (e_value=0.0) RecName: Full=Pyruvate kinase isozyme A, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40545|KPYA_TOBAC (e_value=0.0) Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G22960.1 (e_value=0.0) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc09g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64040779-64049501 transcript_region:SL2.40ch09:64040779..64049501+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9HKC4_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00033577g0010.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0.33|1|0|0.33|3|0|659; (*GB) gi|37223342|gb|AAQ90244.1| (e_value=0.0) DEM2 [Solanum lycopersicum];; (*SWP) sp|P40781|CYPR4_CYNCA (e_value=0.0) Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1;; (*TAIR) AT3G19240.1 (e_value=0.0) | Symbols: | Vacuolar import/degradation, Vid27-related protein | chr3:6664383-6666423 FORWARD LENGTH=648;; (*ITAG) Solyc01g108250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87382869-87386126 transcript_region:SL2.40ch01:87382869..87386126+ functional_description:"Vacuolar import and degradation protein VID27 (AHRD V1 *--- B3LP56_YEAS1); contains Interpro domain(s) IPR013863 Vacuolar import and degradation, Vid27-related "; NbS00033577g0009.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.44|1|0.12|0.33|9|240|486; (*GB) gi|255555467|ref|XP_002518770.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9ZQR3|Y2451_ARATH (e_value=2e-42) Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1;; (*TAIR) AT3G19230.1 (e_value=1e-164) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6661088-6663519 REVERSE LENGTH=519;; (*ITAG) Solyc01g108270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87389527-87393072 transcript_region:SL2.40ch01:87389527..87393072+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00061535g0003.1 protein AED:0.08 eAED:0.12 QI:59|0.8|0.83|1|1|1|6|564|203; (*GB) gi|350539721|ref|NP_001234510.1| (e_value=5e-108) constitutive plastid-lipid associated protein [Solanum lycopersicum];; (*SWP) sp|P52758|UK114_HUMAN (e_value=6e-41) Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1;; (*TAIR) AT3G20390.1 (e_value=2e-80) | Symbols: | endoribonuclease L-PSP family protein | chr3:7110227-7111695 REVERSE LENGTH=187;; (*ITAG) Solyc10g006290.2.1 (e_value=9e-111) genomic_reference:SL2.40ch10 gene_region:946916-950083 transcript_region:SL2.40ch10:946916..950083+ go_terms:GO:0005515,GO:0004521 functional_description:"Endoribonuclease L-PSP family protein (AHRD V1 **-* D7LAZ0_ARALY); contains Interpro domain(s) IPR019897 YjgF-like protein, conserved site "; GO:0005515,GO:0004521 NbS00013799g0013.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.66|0.5|4|0|342; (*GB) gi|223049408|gb|ACM80348.1| (e_value=0.0) cysteine proteinase [Solanum lycopersicum];; (*SWP) sp|P43296|RD19A_ARATH (e_value=2e-168) Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=1e-169) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc01g110110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88650256-88653173 transcript_region:SL2.40ch01:88650256..88653173+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00013799g0012.1 protein AED:0.13 eAED:0.13 QI:79|0.88|0.84|1|0.94|0.94|19|359|821; (*GB) gi|297744756|emb|CBI38018.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P30665|MCM4_YEAST (e_value=0.0) DNA replication licensing factor MCM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM4 PE=1 SV=2;; (*TAIR) AT2G16440.1 (e_value=0.0) | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:7126536-7130665 REVERSE LENGTH=847;; (*ITAG) Solyc01g110130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88665546-88671062 transcript_region:SL2.40ch01:88665546..88671062- go_terms:GO:0003712 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2TZM7_ASPOR); contains Interpro domain(s) IPR008047 MCM protein 4 "; GO:0003712 NbS00013799g0011.1 protein AED:0.34 eAED:0.34 QI:205|0.88|0.88|1|0.76|0.77|18|0|685; (*GB) gi|225427716|ref|XP_002265086.1| (e_value=0.0) PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera];; (*SWP) sp|Q54E04|VATM_DICDI (e_value=0.0) Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2;; (*TAIR) AT4G39080.1 (e_value=0.0) | Symbols: VHA-A3 | vacuolar proton ATPase A3 | chr4:18209513-18214752 FORWARD LENGTH=821;; (*ITAG) Solyc01g110120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88653085-88663519 transcript_region:SL2.40ch01:88653085..88663519- go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00022986g0005.1 protein AED:0.11 eAED:0.11 QI:60|1|1|1|1|1|5|168|259; (*GB) gi|83284001|gb|ABC01908.1| (e_value=8e-128) putative 24 kDa seed maturation protein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SUT9|RTNLB_ARATH (e_value=2e-94) Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1;; (*TAIR) AT4G11220.1 (e_value=1e-95) | Symbols: BTI2, RTNLB2 | VIRB2-interacting protein 2 | chr4:6838176-6839578 REVERSE LENGTH=271;; (*ITAG) Solyc06g036430.2.1 (e_value=5e-134) genomic_reference:SL2.40ch06 gene_region:22670133-22672817 transcript_region:SL2.40ch06:22670133..22672817+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00022986g0003.1 protein AED:0.39 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|152; (*ITAG) Solyc00g181250.2.1 (e_value=4e-34) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004331g0005.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.6|1|1|1|5|309|191; (*GB) gi|329025154|gb|AEB71560.1| (e_value=6e-81) COP9 complex subunit 7a [Solanum chacoense];; (*SWP) sp|Q94JU3|CSN7_ARATH (e_value=6e-64) COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1;; (*TAIR) AT1G02090.3 (e_value=1e-66) | Symbols: FUS5, CSN7, COP15, ATCSN7 | Proteasome component (PCI) domain protein | chr1:388223-389568 REVERSE LENGTH=237;; (*ITAG) Solyc01g090290.2.1 (e_value=5e-83) genomic_reference:SL2.40ch01 gene_region:75716147-75725527 transcript_region:SL2.40ch01:75716147..75725527+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 7 (AHRD V1 ***- B4F8L1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00004331g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|392; (*GB) gi|296278604|gb|ADH04266.1| (e_value=2e-46) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=2e-38) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=1e-39) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090300.2.1 (e_value=2e-93) genomic_reference:SL2.40ch01 gene_region:75727780-75728496 transcript_region:SL2.40ch01:75727780..75728496+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00010543g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|224142199|ref|XP_002324446.1| (e_value=7e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54WR8|GNA1_DICDI (e_value=4e-43) Glucosamine 6-phosphate N-acetyltransferase 1 OS=Dictyostelium discoideum GN=gna1 PE=3 SV=1;; (*TAIR) AT5G15770.1 (e_value=3e-72) | Symbols: AtGNA1, GNA1 | glucose-6-phosphate acetyltransferase 1 | chr5:5144093-5144542 REVERSE LENGTH=149;; (*ITAG) Solyc09g009780.2.1 (e_value=3e-97) genomic_reference:SL2.40ch09 gene_region:3261256-3263382 transcript_region:SL2.40ch09:3261256..3263382+ go_terms:GO:0004343 functional_description:"Glucosamine 6-phosphate N-acetyltransferase (AHRD V1 **** B6TIB6_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004343 NbS00010543g0004.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|1|1|2|0|323; (*GB) gi|225439588|ref|XP_002265522.1| (e_value=4e-147) PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Vitis vinifera];; (*SWP) sp|Q9SR82|PP219_ARATH (e_value=1e-112) Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1;; (*TAIR) AT3G08820.1 (e_value=1e-113) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2677122-2679179 REVERSE LENGTH=685;; (*ITAG) Solyc09g009790.2.1 (e_value=1e-134) genomic_reference:SL2.40ch09 gene_region:3264032-3266983 transcript_region:SL2.40ch09:3264032..3266983- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00010543g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|195; (*GB) gi|356542389|ref|XP_003539649.1| (e_value=5e-92) PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820-like [Glycine max];; (*SWP) sp|Q9SR82|PP219_ARATH (e_value=2e-79) Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1;; (*TAIR) AT3G08820.1 (e_value=1e-80) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2677122-2679179 REVERSE LENGTH=685;; (*ITAG) Solyc09g009790.2.1 (e_value=2e-118) genomic_reference:SL2.40ch09 gene_region:3264032-3266983 transcript_region:SL2.40ch09:3264032..3266983- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00032531g0004.1 protein AED:0.33 eAED:0.33 QI:443|1|0.85|1|0.5|0.57|7|0|248; (*GB) gi|255557090|ref|XP_002519577.1| (e_value=1e-66) Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|Q7SXU0|EI3JA_DANRE (e_value=5e-12) Eukaryotic translation initiation factor 3 subunit J-A OS=Danio rerio GN=eif3ja PE=1 SV=1;; (*TAIR) AT1G66070.2 (e_value=3e-50) | Symbols: | Translation initiation factor eIF3 subunit | chr1:24596194-24597520 REVERSE LENGTH=226;; (*ITAG) Solyc02g079060.2.1 (e_value=2e-84) genomic_reference:SL2.40ch02 gene_region:38263644-38270218 transcript_region:SL2.40ch02:38263644..38270218- functional_description:"Eukaryotic translation initiation factor 3 subunit J (AHRD V1 *-*- B9ENH4_SALSA); contains Interpro domain(s) IPR013906 Translation initiation factor eIF3 subunit "; NbS00017161g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0|0|3|0|270; (*GB) gi|157679144|dbj|BAF80451.1| (e_value=2e-89) MYB-related transcription factor [Nicotiana tabacum];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=2e-67) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G16600.1 (e_value=2e-72) | Symbols: MYB43, AtMYB43 | myb domain protein 43 | chr5:5438291-5440214 FORWARD LENGTH=327;; (*ITAG) Solyc04g014470.2.1 (e_value=7e-96) genomic_reference:SL2.40ch04 gene_region:4708995-4711600 transcript_region:SL2.40ch04:4708995..4711600- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SPG7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00017161g0009.1 protein AED:0.02 eAED:0.02 QI:216|1|1|1|1|1|2|148|143; (*GB) gi|358248934|ref|NP_001239965.1| (e_value=3e-66) uncharacterized protein LOC100802108 [Glycine max];; (*SWP) sp|Q9FHQ3|HS157_ARATH (e_value=4e-53) 15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=2 SV=1;; (*TAIR) AT5G37670.1 (e_value=3e-54) | Symbols: | HSP20-like chaperones superfamily protein | chr5:14969035-14969448 FORWARD LENGTH=137;; (*ITAG) Solyc04g014480.2.1 (e_value=9e-89) genomic_reference:SL2.40ch04 gene_region:4722700-4724263 transcript_region:SL2.40ch04:4722700..4724263+ go_terms:GO:0051082,GO:0042802 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TQD6_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082,GO:0042802 NbS00026918g0010.1 protein AED:0.05 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|114; (*ITAG) Solyc04g017610.2.1 (e_value=1e-44) genomic_reference:SL2.40ch04 gene_region:7569647-7585025 transcript_region:SL2.40ch04:7569647..7585025+ functional_description:"F-box domain containing protein expressed (AHRD V1 ***- Q2R211_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00026918g0024.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.4|0.6|1|1|5|0|536; (*GB) gi|350537361|ref|NP_001234802.1| (e_value=2e-180) transcription factor WRKY72 [Solanum lycopersicum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=2e-62) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=2e-63) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc03g113120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57442051-57446231 transcript_region:SL2.40ch03:57442051..57446231- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00026918g0022.1 protein AED:0.29 eAED:0.30 QI:284|1|0.83|1|0.8|0.83|6|0|285; (*GB) gi|46452120|gb|AAS98165.1| (e_value=0.0) hypersensitive-induced reaction protein [Capsicum annuum];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=0.0) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=0.0) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc03g113220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57486387-57489392 transcript_region:SL2.40ch03:57486387..57489392- go_terms:GO:0005515 functional_description:"SPFH domain/band 7 family protein (AHRD V1 **-- D7VZN9_9FLAO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00026918g0015.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|1|1|1|3|0|91; (*GB) gi|357111483|ref|XP_003557542.1| (e_value=2e-48) PREDICTED: ubiquitin-conjugating enzyme E2 2-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|P35130|UBC2_MEDSA (e_value=8e-42) Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=4e-42) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc03g113100.2.1 (e_value=4e-43) genomic_reference:SL2.40ch03 gene_region:57431345-57437051 transcript_region:SL2.40ch03:57431345..57437051- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 ***- UBC2_MEDSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00026918g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|140; (*ITAG) Solyc03g113200.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57483763-57484170 transcript_region:SL2.40ch03:57483763..57484170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026918g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|1014; (*GB) gi|225456679|ref|XP_002267314.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262158 [Vitis vinifera];; (*TAIR) AT1G74720.1 (e_value=0.0) | Symbols: QKY | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr1:28075173-28078418 FORWARD LENGTH=1081;; (*ITAG) Solyc03g113190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57479187-57482330 transcript_region:SL2.40ch03:57479187..57482330+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00026918g0027.1 protein AED:0.09 eAED:0.09 QI:156|1|1|1|1|1|2|105|213; (*GB) gi|255540919|ref|XP_002511524.1| (e_value=3e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54400.1 (e_value=9e-15) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20307667-20308768 FORWARD LENGTH=183;; (*ITAG) Solyc03g113180.2.1 (e_value=5e-79) genomic_reference:SL2.40ch03 gene_region:57474316-57475310 transcript_region:SL2.40ch03:57474316..57475310+ functional_description:"class I heat shock protein 3 (AHRD V1 *-*- B6TLK8_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00026918g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.83|0.71|1|1|1|7|285|364; (*GB) gi|255540949|ref|XP_002511539.1| (e_value=3e-101) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62550.1 (e_value=5e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105839-25107875 REVERSE LENGTH=487;; (*ITAG) Solyc03g113090.2.1 (e_value=2e-162) genomic_reference:SL2.40ch03 gene_region:57427944-57430724 transcript_region:SL2.40ch03:57427944..57430724+ functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 ***- Q9FJJ1_ARATH)"; NbS00026918g0026.1 protein AED:0.36 eAED:0.37 QI:0|0.6|0.5|1|0.8|0.66|6|0|256; (*GB) gi|297734024|emb|CBI15271.3| (e_value=1e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42056|VDAC2_SOLTU (e_value=2e-45) Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=9e-42) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc03g113210.2.1 (e_value=6e-85) genomic_reference:SL2.40ch03 gene_region:57484817-57486106 transcript_region:SL2.40ch03:57484817..57486106+ go_terms:GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** B9I304_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00026918g0035.1 protein AED:0.25 eAED:0.48 QI:0|0|0|1|0|0|2|0|218; (*GB) gi|225454577|ref|XP_002267544.1| (e_value=4e-36) PREDICTED: uncharacterized protein LOC100254610 [Vitis vinifera];; (*TAIR) AT1G73380.1 (e_value=4e-30) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:27589100-27590657 FORWARD LENGTH=434;; (*ITAG) Solyc03g019930.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:6806299-6809434 transcript_region:SL2.40ch03:6806299..6809434- functional_description:"UPF0415 protein C7orf25 homolog (AHRD V1 *-*- CG025_DANRE); contains Interpro domain(s) IPR010733 Protein of unknown function DUF1308 "; NbS00028951g0004.1 protein AED:0.27 eAED:0.27 QI:212|0.44|0.6|0.9|0.77|0.8|10|352|486; (*GB) gi|224081375|ref|XP_002306388.1| (e_value=7e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93YP7|4HPT_ARATH (e_value=2e-108) 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1;; (*TAIR) AT4G23660.2 (e_value=1e-109) | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | chr4:12328086-12331359 REVERSE LENGTH=407;; (*ITAG) Solyc03g114300.2.1 (e_value=3e-168) genomic_reference:SL2.40ch03 gene_region:58362391-58366660 transcript_region:SL2.40ch03:58362391..58366660+ go_terms:GO:0008412 functional_description:"4-hydroxybenzoate octaprenyltransferase (AHRD V1 **** Q2RWW9_RHORT); contains Interpro domain(s) IPR006370 4-hydroxybenzoate polyprenyl transferase "; GO:0008412 NbS00004502g0008.1 protein AED:0.05 eAED:0.05 QI:689|0.75|0.6|1|0.75|0.4|5|0|505; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00004502g0007.1 protein AED:0.23 eAED:0.27 QI:0|0.16|0|1|0|0|7|0|752; (*GB) gi|225448572|ref|XP_002277929.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase IMK3-like isoform 1 [Vitis vinifera];; (*SWP) sp|C0LGP9|IMK3_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1;; (*TAIR) AT3G56100.1 (e_value=0.0) | Symbols: MRLK, IMK3 | meristematic receptor-like kinase | chr3:20817074-20819517 REVERSE LENGTH=719;; (*ITAG) Solyc05g052350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61751263-61754124 transcript_region:SL2.40ch05:61751263..61754124+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004502g0009.1 protein AED:0.72 eAED:0.79 QI:0|0|0|0.6|1|1|5|0|87 NbS00001487g0008.1 protein AED:0.06 eAED:0.06 QI:388|0.8|1|1|0.6|0.5|6|193|221; (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=2e-104) MADS-box transcription factor FBP29 [Petunia x hybrida];; (*SWP) sp|Q41276|AP1_SINAL (e_value=3e-64) Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1;; (*TAIR) AT1G69120.1 (e_value=2e-64) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256;; (*ITAG) Solyc02g089210.2.1 (e_value=8e-96) genomic_reference:SL2.40ch02 gene_region:45666857-45671596 transcript_region:SL2.40ch02:45666857..45671596+ go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00001487g0009.1 protein AED:0.25 eAED:0.25 QI:356|0.72|0.83|1|0.63|0.5|12|561|247; (*GB) gi|225451823|ref|XP_002281555.1| (e_value=9e-100) PREDICTED: uncharacterized protein ywbO [Vitis vinifera];; (*TAIR) AT5G38900.1 (e_value=1e-84) | Symbols: | Thioredoxin superfamily protein | chr5:15573745-15574945 REVERSE LENGTH=217;; (*ITAG) Solyc02g089230.2.1 (e_value=1e-126) genomic_reference:SL2.40ch02 gene_region:45678308-45681002 transcript_region:SL2.40ch02:45678308..45681002+ go_terms:GO:0003824 functional_description:"DSBA oxidoreductase family protein (AHRD V1 ***- D7MJT4_ARALY); contains Interpro domain(s) IPR001853 DSBA oxidoreductase "; GO:0003824 NbS00001487g0002.1 protein AED:0.20 eAED:0.20 QI:314|0.83|0.57|1|1|1|7|0|456; (*GB) gi|225451821|ref|XP_002281545.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Vitis vinifera];; (*SWP) sp|Q15034|HERC3_HUMAN (e_value=4e-30) Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1;; (*TAIR) AT3G02300.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:461551-463929 FORWARD LENGTH=471;; (*ITAG) Solyc02g089220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45671700-45676268 transcript_region:SL2.40ch02:45671700..45676268- go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00012991g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.6|1|0.5|0.6|5|215|616; (*GB) gi|359474723|ref|XP_002270533.2| (e_value=0.0) PREDICTED: ABC transporter G family member 14-like [Vitis vinifera];; (*SWP) sp|Q9C6W5|AB14G_ARATH (e_value=0.0) ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1;; (*TAIR) AT1G31770.1 (e_value=0.0) | Symbols: ABCG14 | ATP-binding cassette 14 | chr1:11375252-11377644 REVERSE LENGTH=648;; (*ITAG) Solyc08g075430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56730208-56733305 transcript_region:SL2.40ch08:56730208..56733305- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00027936g0012.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|0.5|0.66|3|0|163; (*GB) gi|255553127|ref|XP_002517606.1| (e_value=5e-89) lactoylglutathione lyase, putative [Ricinus communis];; (*TAIR) AT1G80160.1 (e_value=5e-83) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc12g006640.1.1 (e_value=1e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1110621-1111983 transcript_region:SL2.40ch12:1110621..1111983- go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase (AHRD V1 **-* B4UW95_ARAHY); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00027936g0014.1 protein AED:0.17 eAED:0.17 QI:710|1|1|1|1|1|4|359|190; (*GB) gi|255566971|ref|XP_002524468.1| (e_value=2e-76) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G20120.1 (e_value=3e-66) | Symbols: | unknown protein; Has 54 Blast hits to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr5:6795889-6796921 FORWARD LENGTH=188;; (*ITAG) Solyc12g006660.1.1 (e_value=6e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1122820-1125860 transcript_region:SL2.40ch12:1122820..1125860+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027936g0019.1 protein AED:0.17 eAED:0.18 QI:104|0.87|0.66|1|0.75|0.77|9|0|692; (*GB) gi|225445450|ref|XP_002285089.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266409 [Vitis vinifera];; (*TAIR) AT5G20170.1 (e_value=0.0) | Symbols: | RNA polymerase II transcription mediators | chr5:6807554-6810729 REVERSE LENGTH=653;; (*ITAG) Solyc12g006650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1115147-1119904 transcript_region:SL2.40ch12:1115147..1119904+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027936g0017.1 protein AED:0.27 eAED:0.29 QI:146|0.75|0.77|1|0.62|0.77|9|202|277; (*GB) gi|255575074|ref|XP_002528442.1| (e_value=4e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25570.3 (e_value=5e-115) | Symbols: | binding | chr2:10885881-10887842 REVERSE LENGTH=288;; (*ITAG) Solyc12g006670.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1128380-1132905 transcript_region:SL2.40ch12:1128380..1132905+ go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *--- A8TPT4_9PROT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00062230g0006.1 protein AED:0.09 eAED:0.09 QI:73|0.66|0.75|1|1|1|4|486|744; (*GB) gi|255542648|ref|XP_002512387.1| (e_value=1e-159) DNA polymerase zeta catalytic subunit, putative [Ricinus communis];; (*TAIR) AT1G55040.1 (e_value=1e-141) | Symbols: | zinc finger (Ran-binding) family protein | chr1:20534895-20538901 FORWARD LENGTH=849;; (*ITAG) Solyc01g099230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81291134-81296687 transcript_region:SL2.40ch01:81291134..81296687+ go_terms:GO:0005488 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 *--- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00062230g0009.1 protein AED:0.08 eAED:0.13 QI:0|0|0|1|0|0|6|0|803; (*GB) gi|359473586|ref|XP_003631328.1| (e_value=2e-142) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=6e-57) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT2G34930.1 (e_value=2e-105) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc01g099250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81298651-81301673 transcript_region:SL2.40ch01:81298651..81301673- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00009987g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|225427870|ref|XP_002272387.1| (e_value=1e-44) PREDICTED: indole-3-acetic acid-induced protein ARG7-like isoform 1 [Vitis vinifera];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-33) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34770.1 (e_value=2e-45) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16591352-16591666 FORWARD LENGTH=104;; (*ITAG) Solyc01g110900.1.1 (e_value=3e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89149949-89150251 transcript_region:SL2.40ch01:89149949..89150251- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00028347g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|225455928|ref|XP_002276899.1| (e_value=1e-97) PREDICTED: LOB domain-containing protein 41 [Vitis vinifera];; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=9e-77) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1;; (*TAIR) AT3G02550.1 (e_value=7e-78) | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263;; (*ITAG) Solyc03g119530.2.1 (e_value=4e-137) genomic_reference:SL2.40ch03 gene_region:62162997-62164121 transcript_region:SL2.40ch03:62162997..62164121+ functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00037714g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.75|1|1|4|0|487; (*GB) gi|38325815|gb|AAR17080.1| (e_value=0.0) heat shock protein 70-3 [Nicotiana tabacum];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT3G12580.1 (e_value=0.0) | Symbols: HSP70, ATHSP70 | heat shock protein 70 | chr3:3991487-3993689 REVERSE LENGTH=650;; (*ITAG) Solyc06g076020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43582389-43585486 transcript_region:SL2.40ch06:43582389..43585486- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00037714g0004.1 protein AED:0.61 eAED:0.89 QI:0|0|0|0.33|1|1|3|0|130; (*GB) gi|357123956|ref|XP_003563673.1| (e_value=8e-24) PREDICTED: NAD-specific glutamate dehydrogenase-like [Brachypodium distachyon];; (*SWP) sp|P41755|DHE2_ACHKL (e_value=5e-13) NAD-specific glutamate dehydrogenase OS=Achlya klebsiana PE=3 SV=1; NbS00030251g0109.1 protein AED:0.22 eAED:0.22 QI:0|0.62|0.66|1|0.62|0.66|9|316|784 NbS00030251g0103.1 protein AED:0.03 eAED:0.34 QI:77|0|0.5|1|0|0.5|2|136|70 NbS00011867g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|338815363|gb|AEJ08744.1| (e_value=8e-92) RSI2 [Solanum tuberosum];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-12) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT5G49700.1 (e_value=3e-65) | Symbols: | Predicted AT-hook DNA-binding family protein | chr5:20192599-20193429 FORWARD LENGTH=276;; (*ITAG) Solyc12g087950.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61892780-61893580 transcript_region:SL2.40ch12:61892780..61893580- functional_description:"AT-hook motif nuclear localized protein 17 (AHRD V1 **-- Q9LTA2_ARATH); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00011867g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|449; (*GB) gi|359492482|ref|XP_002283891.2| (e_value=1e-126) PREDICTED: uncharacterized protein LOC100247170 [Vitis vinifera];; (*TAIR) AT1G58120.1 (e_value=3e-97) | Symbols: | BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420;; (*ITAG) Solyc12g087930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61879998-61881386 transcript_region:SL2.40ch12:61879998..61881386+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-*- Q9LYW6_ARATH)"; NbS00009700g0006.1 protein AED:0.03 eAED:0.03 QI:196|0.66|0.75|1|0.33|0.25|4|267|250; (*GB) gi|255553797|ref|XP_002517939.1| (e_value=7e-117) Beta-expansin 3 precursor, putative [Ricinus communis];; (*SWP) sp|Q9M0I2|EXPB3_ARATH (e_value=1e-112) Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2;; (*TAIR) AT4G28250.1 (e_value=8e-114) | Symbols: ATEXPB3, EXPB3, ATHEXP BETA 1.6 | expansin B3 | chr4:14000446-14001945 REVERSE LENGTH=264;; (*ITAG) Solyc10g008440.2.1 (e_value=5e-135) genomic_reference:SL2.40ch10 gene_region:2557079-2559825 transcript_region:SL2.40ch10:2557079..2559825+ go_terms:GO:0005576 functional_description:"Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00053291g0003.1 protein AED:0.00 eAED:0.00 QI:266|1|1|1|1|1|3|188|357; (*GB) gi|268638403|gb|ACZ17543.1| (e_value=0.0) oxidoreductase [Capsicum annuum];; (*SWP) sp|P51091|LDOX_MALDO (e_value=1e-84) Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1;; (*TAIR) AT2G38240.1 (e_value=5e-158) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:16012723-16014666 REVERSE LENGTH=353;; (*ITAG) Solyc10g076660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58933875-58936555 transcript_region:SL2.40ch10:58933875..58936555+ go_terms:GO:0016491,GO:0055114 functional_description:"Anthocyanidin synthase (AHRD V1 **-- Q2QCX4_GOSHI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00005976g0002.1 protein AED:0.06 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|487; (*GB) gi|225425882|ref|XP_002266563.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9M8W9|PP211_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2;; (*TAIR) AT3G04130.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1084136-1085662 FORWARD LENGTH=508;; (*ITAG) Solyc05g014490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:8353096-8354652 transcript_region:SL2.40ch05:8353096..8354652+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L220_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005976g0007.1 protein AED:0.18 eAED:0.18 QI:185|0.87|0.88|1|0.87|0.88|9|435|268; (*GB) gi|145323882|ref|NP_001077530.1| (e_value=2e-169) glyceraldehyde 3-phosphate dehydrogenase [Arabidopsis thaliana];; (*SWP) sp|P09094|G3PC_TOBAC (e_value=1e-99) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1;; (*TAIR) AT1G13440.2 (e_value=5e-172) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc05g014470.2.1 (e_value=1e-96) genomic_reference:SL2.40ch05 gene_region:8322381-8324881 transcript_region:SL2.40ch05:8322381..8324881+ go_terms:GO:0004365 functional_description:"Glyceraldehyde 3-phosphate dehydrogenase (AHRD V1 **** Q8LK04_SOLTU); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00000773g0013.1 protein AED:0.11 eAED:0.11 QI:0|1|0.95|1|0.76|0.86|22|43|940; (*GB) gi|225445380|ref|XP_002281687.1| (e_value=0.0) PREDICTED: protein argonaute PNH1 [Vitis vinifera];; (*SWP) sp|Q69VD5|PNH1_ORYSJ (e_value=0.0) Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1;; (*TAIR) AT5G43810.2 (e_value=0.0) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc12g006790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1200019-1205876 transcript_region:SL2.40ch12:1200019..1205876- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00000773g0012.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|105 NbS00010276g0009.1 protein AED:0.06 eAED:0.06 QI:190|1|0.88|1|1|1|9|0|242; (*GB) gi|255543673|ref|XP_002512899.1| (e_value=1e-169) Actin, putative [Ricinus communis];; (*SWP) sp|Q9LSD6|ARP2_ARATH (e_value=6e-165) Actin-related protein 2 OS=Arabidopsis thaliana GN=ARP2 PE=1 SV=1;; (*TAIR) AT3G27000.1 (e_value=5e-166) | Symbols: ARP2, ATARP2, WRM | actin related protein 2 | chr3:9952787-9955784 REVERSE LENGTH=389;; (*ITAG) Solyc02g094320.2.1 (e_value=2e-176) genomic_reference:SL2.40ch02 gene_region:49456402-49464809 transcript_region:SL2.40ch02:49456402..49464809+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q16P63_AEDAE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00010276g0008.1 protein AED:0.20 eAED:0.20 QI:359|0.5|0.57|1|0.83|0.85|7|529|877; (*GB) gi|225451505|ref|XP_002274670.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g14080 [Vitis vinifera];; (*SWP) sp|Q9FMU2|PP380_ARATH (e_value=4e-180) Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2;; (*TAIR) AT5G14080.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4543265-4545256 REVERSE LENGTH=634;; (*ITAG) Solyc02g094310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49453107-49455165 transcript_region:SL2.40ch02:49453107..49455165+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M5Z8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006180g0009.1 protein AED:0.08 eAED:0.08 QI:9|1|0.5|1|1|1|2|94|53 NbS00006180g0011.1 protein AED:0.48 eAED:0.48 QI:0|0.33|0|0.75|0.66|0.5|4|0|79; (*GB) gi|45433317|emb|CAD27462.1| (e_value=4e-29) nucleosome assembly protein 1-like protein 3 [Nicotiana tabacum];; (*TAIR) AT4G26110.2 (e_value=2e-23) | Symbols: NAP1;1 | nucleosome assembly protein1;1 | chr4:13232712-13235060 FORWARD LENGTH=359;; (*ITAG) Solyc12g008940.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00006180g0013.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|0.66|3|0|331; (*GB) gi|388252715|gb|AFK24440.1| (e_value=4e-127) HSFA9 [Coffea arabica];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=4e-73) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=3e-74) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc07g040680.2.1 (e_value=8e-153) genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00031673g0001.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|0|276; (*GB) gi|359482158|ref|XP_003632719.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100267595 [Vitis vinifera];; (*TAIR) AT2G41940.1 (e_value=1e-30) | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507556-17508329 FORWARD LENGTH=257;; (*ITAG) Solyc10g078990.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59960204-59961127 transcript_region:SL2.40ch10:59960204..59961127- go_terms:GO:0005622 functional_description:"Zinc finger-like protein (AHRD V1 ***- Q9M2P1_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00019459g0011.1 protein AED:0.23 eAED:0.24 QI:0|0.81|0.70|0.94|0.87|0.82|17|0|832; (*GB) gi|225448751|ref|XP_002281489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera];; (*SWP) sp|Q9Z1A9|TBCD8_MOUSE (e_value=9e-39) TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2;; (*TAIR) AT3G55020.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:20389278-20394713 REVERSE LENGTH=777;; (*ITAG) Solyc04g009560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2961142-2970580 transcript_region:SL2.40ch04:2961142..2970580- go_terms:GO:0005622 functional_description:"TBC1 domain family member 8B (AHRD V1 *--- B9A6K5_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00019459g0015.1 protein AED:0.24 eAED:0.24 QI:0|1|0.4|1|1|1|5|0|406; (*GB) gi|255568155|ref|XP_002525053.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=6e-180) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc01g067400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68270103-68279664 transcript_region:SL2.40ch01:68270103..68279664- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00019459g0014.1 protein AED:0.31 eAED:0.58 QI:0|0|0|1|0|0|2|0|60 NbS00009937g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|147772925|emb|CAN67178.1| (e_value=3e-20) hypothetical protein VITISV_037456 [Vitis vinifera];; (*ITAG) Solyc09g065350.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:59030390-59030878 transcript_region:SL2.40ch09:59030390..59030878- functional_description:"Unknown Protein (AHRD V1)"; NbS00046026g0007.1 protein AED:0.05 eAED:0.06 QI:0|0.66|0.57|1|0.83|0.71|7|100|1149; (*GB) gi|225464529|ref|XP_002272399.1| (e_value=0.0) PREDICTED: methyltransferase-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q94AI4|METL1_ARATH (e_value=0.0) Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=1 SV=1;; (*TAIR) AT4G09980.1 (e_value=0.0) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963;; (*ITAG) Solyc05g056220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64723434-64730469 transcript_region:SL2.40ch05:64723434..64730469- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00046026g0008.1 protein AED:0.46 eAED:0.46 QI:0|0.5|0.33|0.66|1|1|3|92|103; (*GB) gi|147792794|emb|CAN71036.1| (e_value=9e-37) hypothetical protein VITISV_000358 [Vitis vinifera];; (*SWP) sp|O04153|CALR3_ARATH (e_value=1e-35) Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2;; (*TAIR) AT1G08450.1 (e_value=9e-37) | Symbols: CRT3, PSL1, EBS2, AtCRT3 | calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=424;; (*ITAG) Solyc05g056230.2.1 (e_value=2e-41) genomic_reference:SL2.40ch05 gene_region:64732387-64738654 transcript_region:SL2.40ch05:64732387..64738654- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00046026g0009.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|0|0|2|0|454; (*GB) gi|255580199|ref|XP_002530930.1| (e_value=2e-141) Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|C0LGV0|Y5487_ARATH (e_value=8e-26) Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1;; (*TAIR) AT3G57120.1 (e_value=2e-129) | Symbols: | Protein kinase superfamily protein | chr3:21139099-21140469 FORWARD LENGTH=456;; (*ITAG) Solyc05g056200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64713968-64715290 transcript_region:SL2.40ch05:64713968..64715290+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM30_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00057302g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.92|0.85|0.92|1|1|14|360|559; (*GB) gi|224132234|ref|XP_002328218.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5ZJK8|TCPH_CHICK (e_value=0.0) T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1;; (*TAIR) AT3G11830.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:3732734-3736156 FORWARD LENGTH=557;; (*ITAG) Solyc06g065520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37287472-37295670 transcript_region:SL2.40ch06:37287472..37295670- go_terms:GO:0051082 functional_description:"T-complex protein eta subunit (AHRD V1 ***- A8HQ74_CHLRE); contains Interpro domain(s) IPR012720 T-complex protein 1, eta subunit "; GO:0051082 NbS00057302g0015.1 protein AED:0.16 eAED:0.18 QI:9|1|0|1|1|1|2|0|451; (*GB) gi|224089100|ref|XP_002308636.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFM6|PP375_ARATH (e_value=2e-144) Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1;; (*TAIR) AT5G11310.1 (e_value=1e-145) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:3606490-3608409 FORWARD LENGTH=602;; (*ITAG) Solyc06g065510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37283835-37286950 transcript_region:SL2.40ch06:37283835..37286950+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3P4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057302g0012.1 protein AED:0.20 eAED:0.23 QI:41|0.65|0.52|1|0.55|0.61|21|0|1044; (*GB) gi|225430079|ref|XP_002281842.1| (e_value=0.0) PREDICTED: ABC transporter G family member 32-like [Vitis vinifera];; (*SWP) sp|O81016|AB32G_ARATH (e_value=0.0) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT2G26910.1 (e_value=0.0) | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 | chr2:11481623-11487874 FORWARD LENGTH=1420;; (*ITAG) Solyc06g065670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37459893-37468101 transcript_region:SL2.40ch06:37459893..37468101- go_terms:GO:0042626,GO:0015086 functional_description:"ATP-binding cassette transporter (AHRD V1 **** D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626,GO:0015086 NbS00057302g0014.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|175; (*GB) gi|225430190|ref|XP_002282419.1| (e_value=4e-73) PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LFM6|PP375_ARATH (e_value=1e-48) Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1;; (*TAIR) AT5G11310.1 (e_value=1e-49) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:3606490-3608409 FORWARD LENGTH=602;; (*ITAG) Solyc06g065510.2.1 (e_value=6e-104) genomic_reference:SL2.40ch06 gene_region:37283835-37286950 transcript_region:SL2.40ch06:37283835..37286950+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3P4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000857g0008.1 protein AED:0.24 eAED:0.23 QI:0|1|0.83|1|0.81|0.91|12|330|702; (*GB) gi|225432320|ref|XP_002276207.1| (e_value=0.0) PREDICTED: isoleucyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|B7K5H5|SYI_CYAP8 (e_value=0.0) Isoleucine--tRNA ligase OS=Cyanothece sp. (strain PCC 8801) GN=ileS PE=3 SV=1;; (*TAIR) AT5G49030.3 (e_value=0.0) | Symbols: OVA2 | tRNA synthetase class I (I, L, M and V) family protein | chr5:19875091-19883251 REVERSE LENGTH=1279;; (*ITAG) Solyc01g080810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72600989-72623881 transcript_region:SL2.40ch01:72600989..72623881+ go_terms:GO:0005737,GO:0003824 functional_description:"Isoleucyl-tRNA synthetase (AHRD V1 ***- Q9FI67_ARATH); contains Interpro domain(s) IPR002301 Isoleucyl-tRNA synthetase, class Ia IPR018353 Isoleucyl-tRNA synthetase "; GO:0005737,GO:0003824 NbS00043005g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|255646007|gb|ACU23491.1| (e_value=2e-52) unknown [Glycine max];; (*SWP) sp|Q8S8F8|GEM_ARATH (e_value=3e-49) GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1;; (*TAIR) AT2G22475.1 (e_value=2e-50) | Symbols: GEM | GRAM domain family protein | chr2:9541523-9544778 FORWARD LENGTH=299;; (*ITAG) Solyc07g021540.2.1 (e_value=7e-57) genomic_reference:SL2.40ch07 gene_region:19310213-19316385 transcript_region:SL2.40ch07:19310213..19316385- functional_description:"FIP1 (AHRD V1 **-- B6TPG9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00029525g0006.1 protein AED:0.19 eAED:0.19 QI:5|0.28|0.12|0.75|0.57|0.62|8|0|433; (*GB) gi|224062155|ref|XP_002300782.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJW9|CDT1A_ARATH (e_value=3e-33) CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1;; (*TAIR) AT2G31270.1 (e_value=2e-34) | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast CDT1 A | chr2:13329037-13331544 FORWARD LENGTH=571;; (*ITAG) Solyc01g006140.2.1 (e_value=6e-131) genomic_reference:SL2.40ch01 gene_region:789370-793859 transcript_region:SL2.40ch01:789370..793859- go_terms:GO:0005515,GO:0004693 functional_description:"DNA replication factor Cdt1 (AHRD V1 *-*- CDT1_HUMAN); contains Interpro domain(s) IPR014939 DNA replication factor CDT1-like "; GO:0005515,GO:0004693 NbS00046710g0017.1 protein AED:0.15 eAED:0.15 QI:174|1|1|1|0.5|0.33|3|398|97; (*GB) gi|225446443|ref|XP_002276788.1| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera];; (*TAIR) AT2G20585.1 (e_value=2e-17) | Symbols: NFD6 | nuclear fusion defective 6 | chr2:8865222-8866367 FORWARD LENGTH=100;; (*ITAG) Solyc07g053670.2.1 (e_value=3e-25) genomic_reference:SL2.40ch07 gene_region:59441366-59444178 transcript_region:SL2.40ch07:59441366..59444178+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046710g0016.1 protein AED:0.19 eAED:0.19 QI:0|0.94|0.9|0.95|0.94|0.95|20|464|744; (*GB) gi|225446449|ref|XP_002277029.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=0.0) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00046710g0015.1 protein AED:0.10 eAED:0.10 QI:119|1|0.85|1|1|1|7|0|387; (*GB) gi|224133450|ref|XP_002328045.1| (e_value=0.0) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=5e-165) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=4e-166) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc10g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2315211-2319689 transcript_region:SL2.40ch10:2315211..2319689- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00046710g0014.1 protein AED:0.43 eAED:0.44 QI:0|1|0|1|1|1|2|0|156; (*GB) gi|255553651|ref|XP_002517866.1| (e_value=4e-46) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O49453|Y4844_ARATH (e_value=1e-40) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT2G33845.1 (e_value=2e-44) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:14317781-14318712 FORWARD LENGTH=182;; (*ITAG) Solyc10g008190.2.1 (e_value=1e-60) genomic_reference:SL2.40ch10 gene_region:2311949-2314392 transcript_region:SL2.40ch10:2311949..2314392- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00014846g0001.1 protein AED:0.07 eAED:0.07 QI:688|1|1|1|0.5|0.42|7|574|167; (*GB) gi|356562569|ref|XP_003549542.1| (e_value=9e-108) PREDICTED: uncharacterized protein LOC100784843 [Glycine max];; (*TAIR) AT4G30900.2 (e_value=5e-104) | Symbols: | DNAse I-like superfamily protein | chr4:15040021-15042203 FORWARD LENGTH=316;; (*ITAG) Solyc07g005610.2.1 (e_value=3e-117) genomic_reference:SL2.40ch07 gene_region:494019-496491 transcript_region:SL2.40ch07:494019..496491- functional_description:"Endonuclease/exonuclease/phosphatase family (AHRD V1 ***- B2SN06_XANOP)"; NbS00043300g0004.1 protein AED:0.27 eAED:0.27 QI:154|1|0.84|1|1|1|13|0|682; (*GB) gi|156070780|gb|ABU45193.1| (e_value=0.0) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9CZT4|RPC5_MOUSE (e_value=9e-25) DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus GN=Polr3e PE=1 SV=2;; (*TAIR) AT5G49530.1 (e_value=1e-131) | Symbols: | SIN-like family protein | chr5:20100934-20104242 FORWARD LENGTH=689;; (*ITAG) Solyc08g078600.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59537321-59545380 transcript_region:SL2.40ch08:59537321..59545380- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit RPC5-like protein (AHRD V1 *-*- D0NBY8_PHYIN); contains Interpro domain(s) IPR006886 Sin-like protein conserved region "; GO:0005634 NbS00001271g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|302748343|gb|ADL63652.1| (e_value=3e-177) NADH dehydrogenase subunit 5 [Myodocarpus involucratus];; (*SWP) sp|Q37680|NU5M_WHEAT (e_value=1e-166) NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum GN=ND5 PE=3 SV=1;; (*ITAG) ATMG00665.1 (e_value=2e-161) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669;; (*ITAG) Solyc00g013140.1.1 (e_value=3e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10682531-10684357 transcript_region:SL2.40ch00:10682531..10684357- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit 5 (Fragment) (AHRD V1 ***- A1XJP5_SIMCH); contains Interpro domain(s) IPR003945 NADH-plastoquinone oxidoreductase, chain 5 "; GO:0055114 NbS00001271g0002.1 protein AED:0.14 eAED:0.15 QI:88|0.83|0.69|1|0.75|0.69|13|0|686; (*GB) gi|350537149|ref|NP_001233771.1| (e_value=0.0) auxin response factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9ZTX9|ARFD_ARATH (e_value=1e-146) Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1;; (*TAIR) AT5G60450.1 (e_value=9e-148) | Symbols: ARF4 | auxin response factor 4 | chr5:24308558-24312187 REVERSE LENGTH=788;; (*ITAG) Solyc11g069190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50901128-50909553 transcript_region:SL2.40ch11:50901128..50909553- go_terms:GO:0003700 functional_description:"Auxin response factor 4 (AHRD V1 **** Q2LAI9_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00020157g0001.1 protein AED:0.15 eAED:0.15 QI:339|1|0.66|1|0|0|3|0|758; (*GB) gi|225441770|ref|XP_002277767.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1-like [Vitis vinifera];; (*SWP) sp|P93756|SD31_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=2 SV=1;; (*TAIR) AT2G41890.1 (e_value=0.0) | Symbols: | curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein | chr2:17478058-17480352 REVERSE LENGTH=764;; (*ITAG) Solyc03g063650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:32677639-32679918 transcript_region:SL2.40ch03:32677639..32679918- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00056544g0001.1 protein AED:0.21 eAED:0.21 QI:236|0.83|0.71|1|0.66|0.57|7|0|509; (*GB) gi|225456437|ref|XP_002280645.1| (e_value=0.0) PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Vitis vinifera];; (*SWP) sp|P58813|APGM_METKA (e_value=4e-69) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=apgM PE=3 SV=1;; (*TAIR) AT3G30841.1 (e_value=0.0) | Symbols: | Cofactor-independent phosphoglycerate mutase | chr3:12591595-12593401 FORWARD LENGTH=495;; (*ITAG) Solyc06g005370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:381039-384707 transcript_region:SL2.40ch06:381039..384707+ go_terms:GO:0046872,GO:0008152 functional_description:"Predicted 2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 ***- D9PU88_METTM); contains Interpro domain(s) IPR019304 2,3-bisphosphoglycerate-independent phosphoglycerate mutase "; GO:0046872,GO:0008152 NbS00004838g0008.1 protein AED:0.00 eAED:0.00 QI:109|1|1|1|1|1|4|665|87; (*GB) gi|225433167|ref|XP_002285284.1| (e_value=1e-59) PREDICTED: uncharacterized protein At3g23325 [Vitis vinifera];; (*SWP) sp|Q9LW64|SF3BA_ARATH (e_value=4e-60) Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1;; (*TAIR) AT3G23325.1 (e_value=3e-61) | Symbols: | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | chr3:8345808-8346856 FORWARD LENGTH=87;; (*ITAG) Solyc08g069080.2.1 (e_value=1e-63) genomic_reference:SL2.40ch08 gene_region:55370023-55373387 transcript_region:SL2.40ch08:55370023..55373387+ go_terms:GO:0005515 functional_description:"Splicing factor 3B subunit 5 (AHRD V1 ***- B0XFY1_CULQU); contains Interpro domain(s) IPR017089 Splicing factor 3B, subunit 5 "; GO:0005515 NbS00004838g0003.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.6|1|1|5|0|110 NbS00051393g0005.1 protein AED:0.00 eAED:0.00 QI:79|1|1|1|0|0.5|2|188|133; (*GB) gi|225442677|ref|XP_002284798.1| (e_value=3e-22) PREDICTED: uncharacterized protein LOC100256715 [Vitis vinifera];; (*ITAG) Solyc06g066750.2.1 (e_value=1e-56) genomic_reference:SL2.40ch06 gene_region:38325638-38326574 transcript_region:SL2.40ch06:38325638..38326574- functional_description:"Unknown Protein (AHRD V1)"; NbS00051393g0001.1 protein AED:0.08 eAED:0.08 QI:136|0|0.5|1|0|0.5|2|0|443; (*GB) gi|359482951|ref|XP_003632864.1| (e_value=7e-108) PREDICTED: uncharacterized protein LOC100265296 [Vitis vinifera];; (*SWP) sp|Q7Z3J3|RGPD4_HUMAN (e_value=3e-13) RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=3;; (*TAIR) AT3G15970.1 (e_value=1e-83) | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr3:5408982-5410379 REVERSE LENGTH=465;; (*ITAG) Solyc06g066740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38323238-38324590 transcript_region:SL2.40ch06:38323238..38324590+ go_terms:GO:0005643,GO:0046907 functional_description:"Ran binding protein 3 (AHRD V1 *-*- Q6IP83_XENLA); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0005643,GO:0046907 NbS00053448g0001.1 protein AED:0.10 eAED:0.22 QI:0|0|0|1|1|1|2|0|67; (*ITAG) Solyc01g101260.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:82833017-82833752 transcript_region:SL2.40ch01:82833017..82833752+ functional_description:"Unknown Protein (AHRD V1)"; NbC26113881g0001.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|0|0|2|0|340; (*GB) gi|237770129|gb|ACR19029.1| (e_value=0.0) polygalacturonase inhibiting protein [Solanum torvum];; (*SWP) sp|Q05091|PGIP_PYRCO (e_value=1e-147) Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1;; (*TAIR) AT5G06860.1 (e_value=1e-144) | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhibiting protein 1 | chr5:2132373-2133434 FORWARD LENGTH=330;; (*ITAG) Solyc07g065090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64222356-64223339 transcript_region:SL2.40ch07:64222356..64223339- go_terms:GO:0004675 functional_description:"Polygalacturonase inhibitor protein (AHRD V1 ***- Q40160_SOLLC); contains Interpro domain(s) IPR013210 Leucine-rich repeat, N-terminal "; GO:0004675 NbS00013099g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|46241272|gb|AAS82859.1| (e_value=5e-94) geranyl diphosphate synthase small subunit [Antirrhinum majus];; (*SWP) sp|Q39108|GGR_ARATH (e_value=1e-35) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=9e-37) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc07g064660.1.1 (e_value=8e-143) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63934349-63935224 transcript_region:SL2.40ch07:63934349..63935224- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q8LSC4_9ROSI); contains Interpro domain(s) IPR008949 Terpenoid synthase "; GO:0004311 NbS00033002g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|224056210|ref|XP_002298757.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39266|ZFP7_ARATH (e_value=2e-18) Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1;; (*TAIR) AT1G24625.1 (e_value=1e-19) | Symbols: ZFP7 | zinc finger protein 7 | chr1:8726009-8726638 REVERSE LENGTH=209;; (*ITAG) Solyc01g107430.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:86756484-86757583 transcript_region:SL2.40ch01:86756484..86757583- go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U599_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00033002g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0.87|1|1|1|8|616|748; (*GB) gi|296083100|emb|CBI22504.3| (e_value=1e-130) unnamed protein product [Vitis vinifera];; (*SWP) sp|P48786|PRH_PETCR (e_value=5e-84) Pathogenesis-related homeodomain protein OS=Petroselinum crispum GN=PRH PE=2 SV=1;; (*TAIR) AT3G19510.1 (e_value=1e-80) | Symbols: HAT3.1 | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr3:6763205-6766049 REVERSE LENGTH=723;; (*ITAG) Solyc01g107410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86742674-86750095 transcript_region:SL2.40ch01:86742674..86750095+ go_terms:GO:0008270,GO:0006355,GO:0045449 functional_description:"PHD-finger family homeodomain protein (Fragment) (AHRD V1 *--- Q8H990_ORYSJ); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270,GO:0006355,GO:0045449 NbS00033002g0006.1 protein AED:0.34 eAED:0.34 QI:246|1|1|1|0.71|0.62|8|206|291; (*GB) gi|359475460|ref|XP_002270710.2| (e_value=2e-143) PREDICTED: TIP41-like protein-like [Vitis vinifera];; (*SWP) sp|Q5FW12|TIPRL_XENTR (e_value=6e-42) TIP41-like protein OS=Xenopus tropicalis GN=tiprl PE=2 SV=1;; (*TAIR) AT4G34270.1 (e_value=9e-132) | Symbols: | TIP41-like family protein | chr4:16404138-16406153 REVERSE LENGTH=290;; (*ITAG) Solyc10g049850.1.1 (e_value=5e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:42439242-42449952 transcript_region:SL2.40ch10:42439242..42449952+ go_terms:GO:0005515 functional_description:"TIP41-like protein (AHRD V1 ***- B2XBN7_SALSA); contains Interpro domain(s) IPR007303 TIP41-like protein "; GO:0005515 NbS00001449g0010.1 protein AED:0.11 eAED:0.11 QI:185|1|1|1|0.8|0.85|21|291|730; (*GB) gi|297746269|emb|CBI16325.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28320.1 (e_value=0.0) | Symbols: | Pleckstrin homology (PH) and lipid-binding START domains-containing protein | chr2:12095161-12099424 FORWARD LENGTH=737;; (*ITAG) Solyc06g075130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43006999-43014340 transcript_region:SL2.40ch06:43006999..43014340+ go_terms:GO:0035091 functional_description:"Kinase-START domain protein (AHRD V1 *--- B9UN35_TRITU); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0035091 NbS00001449g0011.1 protein AED:0.28 eAED:0.28 QI:9|1|0|1|1|1|2|0|273; (*GB) gi|12711287|emb|CAC28528.1| (e_value=2e-85) GATA-1 zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q6DBP8|GAT11_ARATH (e_value=2e-47) GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1;; (*TAIR) AT1G08010.2 (e_value=2e-48) | Symbols: GATA11 | GATA transcription factor 11 | chr1:2486202-2487402 REVERSE LENGTH=303;; (*ITAG) Solyc06g075140.2.1 (e_value=1e-102) genomic_reference:SL2.40ch06 gene_region:43016241-43019613 transcript_region:SL2.40ch06:43016241..43019613+ go_terms:GO:0004997,GO:0046983 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0004997,GO:0046983 NbS00001449g0015.1 protein AED:0.32 eAED:0.32 QI:225|1|1|1|0.6|0.56|16|331|389; (*GB) gi|255578131|ref|XP_002529935.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G28310.3 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr2:12085773-12087888 FORWARD LENGTH=374;; (*ITAG) Solyc11g069550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51250786-51256286 transcript_region:SL2.40ch11:51250786..51256286- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00042579g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|343796222|gb|AEM63548.1| (e_value=2e-52) dehydration-responsive element-binding protein DREB1 [Solanum tuberosum];; (*SWP) sp|Q9M080|ERF43_ARATH (e_value=7e-40) Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1;; (*TAIR) AT4G32800.1 (e_value=5e-41) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:15819812-15820477 FORWARD LENGTH=221;; (*ITAG) Solyc03g120840.1.1 (e_value=1e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63144160-63144909 transcript_region:SL2.40ch03:63144160..63144909+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00006286g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.6|1|1|1|5|0|522; (*GB) gi|297742493|emb|CBI34642.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C884|PMTI_ARATH (e_value=0.0) Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1;; (*TAIR) AT1G33170.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:12027262-12030397 FORWARD LENGTH=639;; (*ITAG) Solyc08g013740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3105615-3108393 transcript_region:SL2.40ch08:3105615..3108393- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KIG1_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00011996g0005.1 protein AED:0.25 eAED:0.27 QI:114|0.85|0.86|1|0.64|0.86|15|405|578; (*GB) gi|225431027|ref|XP_002273357.1| (e_value=6e-177) PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WUC5|ALB33_ARATH (e_value=1e-149) ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1;; (*TAIR) AT3G44370.1 (e_value=1e-150) | Symbols: | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain | chr3:16030515-16035147 REVERSE LENGTH=566;; (*ITAG) Solyc11g013070.1.1 (e_value=4e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5919368-5932080 transcript_region:SL2.40ch11:5919368..5932080+ go_terms:GO:0005488,GO:0016021 functional_description:"Inner membrane protein OXA1L mitochondrial (AHRD V1 *-*- C1BK04_OSMMO); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0005488,GO:0016021 NbS00010951g0011.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|1|1|2|0|121; (*GB) gi|147784578|emb|CAN70485.1| (e_value=5e-29) hypothetical protein VITISV_041712 [Vitis vinifera];; (*TAIR) AT4G03600.1 (e_value=1e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1603820-1604308 REVERSE LENGTH=162;; (*ITAG) Solyc07g053930.1.1 (e_value=8e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59669873-59670388 transcript_region:SL2.40ch07:59669873..59670388- functional_description:"Unknown Protein (AHRD V1)"; NbS00010951g0013.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.85|0.87|8|0|433; (*GB) gi|224092920|ref|XP_002309754.1| (e_value=5e-106) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DR04|RTNLQ_ARATH (e_value=7e-87) Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1;; (*TAIR) AT2G20590.1 (e_value=5e-88) | Symbols: | Reticulon family protein | chr2:8867243-8869166 REVERSE LENGTH=431;; (*ITAG) Solyc07g053700.2.1 (e_value=9e-174) genomic_reference:SL2.40ch07 gene_region:59455869-59458997 transcript_region:SL2.40ch07:59455869..59458997- go_terms:GO:0005783 functional_description:"Reticulon-like protein B17 (AHRD V1 *-*- RTNLQ_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00010951g0014.1 protein AED:0.40 eAED:0.46 QI:0|0|0|0.5|1|0.5|2|0|162; (*GB) gi|54261828|gb|AAV31178.1| (e_value=7e-27) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc08g016290.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00010951g0016.1 protein AED:0.35 eAED:0.37 QI:8|0|0|1|0|0|2|0|117; (*ITAG) Solyc08g016290.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00008777g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.90|0.91|0.91|0.90|0.91|12|0|902; (*GB) gi|255551016|ref|XP_002516556.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5ZL00|K0090_CHICK (e_value=2e-82) Uncharacterized protein KIAA0090 homolog OS=Gallus gallus GN=RCJMB04_8i12 PE=2 SV=1;; (*TAIR) AT5G11560.1 (e_value=0.0) | Symbols: | catalytics | chr5:3709734-3713994 REVERSE LENGTH=982;; (*ITAG) Solyc09g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2077574-2085153 transcript_region:SL2.40ch09:2077574..2085153- go_terms:GO:0005515,GO:0003824 functional_description:"KIAA0090 homolog (AHRD V1 **-- B5X182_SALSA); contains Interpro domain(s) IPR011678 Protein of unknown function DUF1620 "; GO:0005515,GO:0003824 NbS00008777g0006.1 protein AED:0.19 eAED:0.19 QI:459|1|1|1|0.88|0.9|10|609|503; (*GB) gi|359482287|ref|XP_002263129.2| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-92) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT2G36670.2 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=507;; (*ITAG) Solyc09g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00054621g0003.1 protein AED:0.00 eAED:0.00 QI:40|1|1|1|0.66|0.75|4|125|168; (*GB) gi|225436319|ref|XP_002267642.1| (e_value=5e-75) PREDICTED: uncharacterized protein LOC100243168 [Vitis vinifera];; (*TAIR) AT2G27740.1 (e_value=5e-61) | Symbols: | Family of unknown function (DUF662) | chr2:11822800-11823575 FORWARD LENGTH=174;; (*ITAG) Solyc11g066970.1.1 (e_value=2e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49833889-49836265 transcript_region:SL2.40ch11:49833889..49836265- functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00006825g0005.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|327; (*GB) gi|224070855|ref|XP_002303266.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8R431|MGLL_RAT (e_value=6e-28) Monoglyceride lipase OS=Rattus norvegicus GN=Mgll PE=1 SV=1;; (*TAIR) AT1G52760.1 (e_value=0.0) | Symbols: LysoPL2 | lysophospholipase 2 | chr1:19651378-19652576 FORWARD LENGTH=332;; (*ITAG) Solyc03g119980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62544810-62547302 transcript_region:SL2.40ch03:62544810..62547302- go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00034117g0003.1 protein AED:0.23 eAED:0.32 QI:0|0|0|1|1|1|9|0|309; (*GB) gi|255556390|ref|XP_002519229.1| (e_value=3e-118) ATP-citrate synthase, putative [Ricinus communis];; (*SWP) sp|Q93VT8|ACLB1_ORYSJ (e_value=3e-118) ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT5G49460.1 (e_value=2e-117) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc12g099260.1.1 (e_value=3e-125) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00047594g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.82|0.88|0.81|0.88|17|472|659; (*GB) gi|124484391|dbj|BAF46306.1| (e_value=0.0) ataxin-2 related protein [Ipomoea nil];; (*SWP) sp|Q55DE7|ATX2_DICDI (e_value=2e-29) Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1;; (*TAIR) AT3G14010.3 (e_value=8e-134) | Symbols: CID4 | CTC-interacting domain 4 | chr3:4637164-4640691 FORWARD LENGTH=595;; (*ITAG) Solyc03g121950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63997165-64006343 transcript_region:SL2.40ch03:63997165..64006343- functional_description:"Ataxin-2 (AHRD V1 *--- D3BPE8_POLPA); contains Interpro domain(s) IPR009604 LsmAD domain "; NbS00061790g0003.1 protein AED:0.15 eAED:0.15 QI:97|1|1|1|1|1|3|510|169; (*GB) gi|224099705|ref|XP_002311585.1| (e_value=1e-59) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60010.1 (e_value=3e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:22095660-22096434 REVERSE LENGTH=173;; (*ITAG) Solyc05g006030.2.1 (e_value=4e-74) genomic_reference:SL2.40ch05 gene_region:773056-774112 transcript_region:SL2.40ch05:773056..774112+ functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00040229g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|357156674|ref|XP_003577537.1| (e_value=8e-96) PREDICTED: acetylajmalan esterase-like [Brachypodium distachyon];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=5e-87) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28640.1 (e_value=3e-88) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10067563-10069109 REVERSE LENGTH=389;; (*ITAG) Solyc12g017460.1.1 (e_value=9e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00040229g0003.1 protein AED:0.08 eAED:0.08 QI:60|0.87|1|1|0.75|0.88|9|979|286; (*GB) gi|7387849|sp|O04974.1|LEU1B_SOLPN (e_value=2e-80) RecName: Full=2-isopropylmalate synthase B; AltName: Full=Alpha-IPM synthase B; AltName: Full=Alpha-isopropylmalate synthase B;; (*SWP) sp|O04974|LEU1B_SOLPN (e_value=6e-82) 2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1;; (*TAIR) AT1G74040.1 (e_value=1e-74) | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631;; (*ITAG) Solyc06g053400.2.1 (e_value=3e-87) genomic_reference:SL2.40ch06 gene_region:32654699-32664611 transcript_region:SL2.40ch06:32654699..32664611+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase "; GO:0003852 NbS00040229g0008.1 protein AED:0.25 eAED:0.25 QI:136|0.5|0.33|0.66|0.5|1|3|0|85 NbS00040229g0104.1 protein AED:0.14 eAED:0.14 QI:306|1|1|1|0.6|0.33|6|249|564 NbS00040229g0118.1 protein AED:0.25 eAED:0.28 QI:0|0.54|0.66|1|0.45|0.5|12|678|196 NbS00040229g0125.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.8|0.75|0.8|5|0|645 NbS00040229g0120.1 protein AED:0.23 eAED:0.23 QI:34|0.90|0.83|1|0.90|0.91|12|341|613 NbS00018369g0004.1 protein AED:0.41 eAED:0.42 QI:183|0.75|0.66|0.77|0.62|0.66|9|0|378; (*GB) gi|302143319|emb|CBI21880.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FKW0|RNG1A_ARATH (e_value=8e-38) Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2;; (*TAIR) AT5G44280.1 (e_value=6e-39) | Symbols: ATRING1A, RING1A | RING 1A | chr5:17836115-17839114 REVERSE LENGTH=522;; (*ITAG) Solyc07g053800.2.1 (e_value=2e-67) genomic_reference:SL2.40ch07 gene_region:59538571-59545480 transcript_region:SL2.40ch07:59538571..59545480- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- B0WQV3_CULQU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030868g0004.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|119; (*GB) gi|388329750|gb|AFK29266.1| (e_value=2e-37) small auxin-up protein 58 [Solanum lycopersicum];; (*TAIR) AT2G46690.1 (e_value=3e-21) | Symbols: | SAUR-like auxin-responsive protein family | chr2:19180904-19181269 FORWARD LENGTH=121;; (*ITAG) Solyc06g053260.1.1 (e_value=4e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32473512-32473901 transcript_region:SL2.40ch06:32473512..32473901+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LF78_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00010315g0014.1 protein AED:0.16 eAED:0.22 QI:0|1|0|1|1|1|2|0|520; (*GB) gi|225425900|ref|XP_002266763.1| (e_value=1e-178) PREDICTED: F-box protein SKIP14 [Vitis vinifera];; (*SWP) sp|Q9LU91|SKI14_ARATH (e_value=9e-109) F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1;; (*TAIR) AT3G26000.1 (e_value=7e-110) | Symbols: | Ribonuclease inhibitor | chr3:9507042-9508542 REVERSE LENGTH=453;; (*ITAG) Solyc04g024940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:16128836-16131929 transcript_region:SL2.40ch04:16128836..16131929+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 ***- D7LQX6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00010315g0015.1 protein AED:0.08 eAED:0.09 QI:543|0.83|0.78|1|0.66|0.68|19|627|868; (*GB) gi|359484098|ref|XP_002268907.2| (e_value=0.0) PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog 1-like [Vitis vinifera];; (*SWP) sp|Q8H0T9|KTNB1_ARATH (e_value=0.0) Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3;; (*TAIR) AT5G08390.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:2701448-2706910 FORWARD LENGTH=839;; (*ITAG) Solyc02g021360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13222648-13241707 transcript_region:SL2.40ch02:13222648..13241707- go_terms:GO:0046982 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7K750_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0046982 NbS00027604g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-13) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc12g044970.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00027604g0008.1 protein AED:0.05 eAED:0.05 QI:387|1|0.5|1|1|1|4|0|412; (*GB) gi|82581289|dbj|BAE48709.1| (e_value=0.0) ZIP family metal transporter [Chengiopanax sciadophylloides];; (*SWP) sp|O04089|ZIP4_ARATH (e_value=1e-156) Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1;; (*TAIR) AT1G10970.1 (e_value=6e-157) | Symbols: ZIP4, ATZIP4 | zinc transporter 4 precursor | chr1:3665201-3666933 REVERSE LENGTH=408;; (*ITAG) Solyc08g065190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50183141-50186092 transcript_region:SL2.40ch08:50183141..50186092+ go_terms:GO:0005385 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005385 NbS00027604g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|189; (*ITAG) Solyc08g065210.1.1 (e_value=5e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:50258271-50258822 transcript_region:SL2.40ch08:50258271..50258822+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032613g0105.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|238 NbS00015370g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|0|413; (*GB) gi|255556860|ref|XP_002519463.1| (e_value=7e-175) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|O04376|2A5B_ARATH (e_value=8e-167) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1;; (*TAIR) AT3G09880.1 (e_value=6e-168) | Symbols: ATB' BETA | Protein phosphatase 2A regulatory B subunit family protein | chr3:3029902-3031931 FORWARD LENGTH=499;; (*ITAG) Solyc09g008400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1854557-1859965 transcript_region:SL2.40ch09:1854557..1859965- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_HUMAN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00015370g0006.1 protein AED:0.37 eAED:0.45 QI:0|0|0|1|0|0|3|0|122; (*ITAG) Solyc10g083900.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62942836-62943825 transcript_region:SL2.40ch10:62942836..62943825- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00017508g0001.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|255538274|ref|XP_002510202.1| (e_value=3e-52) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=1e-38) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=1e-39) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc04g078790.2.1 (e_value=9e-68) genomic_reference:SL2.40ch04 gene_region:61052134-61053446 transcript_region:SL2.40ch04:61052134..61053446+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00004818g0012.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|4|465|493; (*GB) gi|18253083|dbj|BAB83948.1| (e_value=0.0) CIG1 [Nicotiana tabacum];; (*SWP) sp|Q6NKX1|PROD2_ARATH (e_value=0.0) Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1;; (*TAIR) AT5G38710.1 (e_value=0.0) | Symbols: | Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476;; (*ITAG) Solyc02g089630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45957682-45960380 transcript_region:SL2.40ch02:45957682..45960380- go_terms:GO:0005515,GO:0004657 functional_description:"Proline dehydrogenase (AHRD V1 **** A1E289_ACTDE); contains Interpro domain(s) IPR015659 Proline oxidase "; GO:0005515,GO:0004657 NbS00004818g0003.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|312283105|dbj|BAJ34418.1| (e_value=1e-44) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=1e-44) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=1e-45) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc09g075150.2.1 (e_value=8e-50) genomic_reference:SL2.40ch09 gene_region:62444486-62447482 transcript_region:SL2.40ch09:62444486..62447482+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00004818g0013.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|398; (*GB) gi|224079914|ref|XP_002305971.1| (e_value=2e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT1G61600.1 (e_value=7e-100) | Symbols: | Protein of unknown function (DUF1262) | chr1:22729816-22731182 FORWARD LENGTH=421;; (*ITAG) Solyc02g089650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45984452-45986300 transcript_region:SL2.40ch02:45984452..45986300+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00016158g0004.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|497; (*GB) gi|225430354|ref|XP_002285290.1| (e_value=1e-163) PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=6e-21) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G31890.2 (e_value=3e-149) | Symbols: | ARM repeat superfamily protein | chr4:15427290-15429049 REVERSE LENGTH=518;; (*ITAG) Solyc08g042100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29084630-29086647 transcript_region:SL2.40ch08:29084630..29086647+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MAU3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00003950g0012.1 protein AED:0.15 eAED:0.15 QI:306|1|1|1|1|1|2|426|150; (*GB) gi|224126295|ref|XP_002329519.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17960.1 (e_value=2e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9971154-9972227 FORWARD LENGTH=154;; (*ITAG) Solyc06g061140.2.1 (e_value=1e-69) genomic_reference:SL2.40ch06 gene_region:35532227-35536524 transcript_region:SL2.40ch06:35532227..35536524- functional_description:"Genomic DNA chromosome 5 BAC clone F10E10 (AHRD V1 ***- Q9FG56_ARATH)"; NbS00003950g0013.1 protein AED:0.21 eAED:0.24 QI:0|0|0.33|1|0|0.33|3|0|233; (*GB) gi|297742118|emb|CBI33905.3| (e_value=3e-116) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G32520.1 (e_value=2e-105) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:11758422-11759272 REVERSE LENGTH=239;; (*ITAG) Solyc06g061090.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:35503115-35504591 transcript_region:SL2.40ch06:35503115..35504591- functional_description:"LOC555512 protein (Fragment) (AHRD V1 *-*- Q1LVY9_DANRE)"; NbS00003950g0011.1 protein AED:0.09 eAED:0.09 QI:506|1|1|1|0.75|0.6|5|285|344; (*GB) gi|21105751|gb|AAM34774.1|AF509874_1 (e_value=2e-166) nam-like protein 11 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-52) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT4G17980.1 (e_value=1e-80) | Symbols: anac071, NAC071 | NAC domain containing protein 71 | chr4:9978850-9980038 REVERSE LENGTH=262;; (*ITAG) Solyc06g061080.2.1 (e_value=3e-179) genomic_reference:SL2.40ch06 gene_region:35499147-35501008 transcript_region:SL2.40ch06:35499147..35501008+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00003950g0010.1 protein AED:0.42 eAED:0.48 QI:0|0.71|0.62|1|0.57|0.37|8|125|222; (*GB) gi|359494977|ref|XP_002264033.2| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100263253 [Vitis vinifera];; (*TAIR) AT2G38695.1 (e_value=1e-51) | Symbols: | unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:16177946-16180236 FORWARD LENGTH=212;; (*ITAG) Solyc06g061130.2.1 (e_value=5e-78) genomic_reference:SL2.40ch06 gene_region:35526431-35530685 transcript_region:SL2.40ch06:35526431..35530685+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015100g0001.1 protein AED:0.06 eAED:0.06 QI:87|1|1|1|1|1|2|290|261; (*GB) gi|225441854|ref|XP_002278498.1| (e_value=1e-89) PREDICTED: DTW domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q9D0U1|DTWD2_MOUSE (e_value=5e-26) DTW domain-containing protein 2 OS=Mus musculus GN=Dtwd2 PE=2 SV=1;; (*TAIR) AT2G41750.1 (e_value=2e-64) | Symbols: | DTW domain-containing protein | chr2:17421746-17422507 REVERSE LENGTH=253;; (*ITAG) Solyc02g087600.2.1 (e_value=8e-163) genomic_reference:SL2.40ch02 gene_region:44554170-44556713 transcript_region:SL2.40ch02:44554170..44556713+ functional_description:"DTW domain-containing protein (AHRD V1 ***- D7LHB1_ARALY); contains Interpro domain(s) IPR005636 DTW "; NbS00042985g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0.5|0.66|3|14|93; (*GB) gi|255575890|ref|XP_002528842.1| (e_value=3e-58) Cytochrome c, putative [Ricinus communis];; (*SWP) sp|P00059|CYC_ABUTH (e_value=2e-59) Cytochrome c OS=Abutilon theophrasti PE=1 SV=1;; (*TAIR) AT4G10040.1 (e_value=7e-59) | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-6278281 FORWARD LENGTH=112;; (*ITAG) Solyc11g042420.1.1 (e_value=9e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:31786354-31788004 transcript_region:SL2.40ch11:31786354..31788004+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00042985g0009.1 protein AED:0.21 eAED:0.24 QI:119|0.75|0.6|1|0.75|0.8|5|0|302; (*GB) gi|899344|emb|CAA58859.1| (e_value=6e-123) lipoxygenase [Nicotiana tabacum];; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=8e-124) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT1G55020.1 (e_value=2e-112) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099200.2.1 (e_value=2e-139) genomic_reference:SL2.40ch01 gene_region:81264237-81268132 transcript_region:SL2.40ch01:81264237..81268132+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00042985g0008.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.66|1|1|3|0|123; (*GB) gi|70608338|gb|AAZ04411.1| (e_value=1e-29) lipoxygenase [Adelostemma gracillimum];; (*SWP) sp|O24379|LOX12_SOLTU (e_value=4e-30) Linoleate 9S-lipoxygenase 2 OS=Solanum tuberosum GN=LOX1.2 PE=1 SV=1;; (*TAIR) AT1G55020.1 (e_value=8e-25) | Symbols: LOX1, ATLOX1 | lipoxygenase 1 | chr1:20525798-20530143 FORWARD LENGTH=859;; (*ITAG) Solyc01g099200.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:81264237-81268132 transcript_region:SL2.40ch01:81264237..81268132+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q43191_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00056950g0003.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|302; (*ITAG) Solyc03g031950.1.1 (e_value=3e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:8708260-8708952 transcript_region:SL2.40ch03:8708260..8708952- functional_description:"Unknown Protein (AHRD V1)"; NbC25182766g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|225445023|ref|XP_002283114.1| (e_value=2e-93) PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera];; (*SWP) sp|Q9M0G2|C3H49_ARATH (e_value=2e-82) Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1;; (*TAIR) AT4G29190.1 (e_value=1e-83) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr4:14392233-14393303 REVERSE LENGTH=356;; (*ITAG) Solyc12g008660.1.1 (e_value=8e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00023035g0006.1 protein AED:0.29 eAED:0.30 QI:263|0.42|0.62|1|0.57|0.75|8|187|232; (*GB) gi|224460055|gb|ACN43578.1| (e_value=3e-60) nuclear cap-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9XFD1|NCBP2_ARATH (e_value=2e-57) Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1;; (*TAIR) AT5G44200.2 (e_value=2e-58) | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 | chr5:17802062-17803875 REVERSE LENGTH=257;; (*ITAG) Solyc02g062620.2.1 (e_value=8e-62) genomic_reference:SL2.40ch02 gene_region:28927635-28944665 transcript_region:SL2.40ch02:28927635..28944665- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 2 (AHRD V1 **** B6SNB6_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0000339 NbS00016229g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.81|1|1|0.90|11|0|315; (*GB) gi|224134524|ref|XP_002327426.1| (e_value=6e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q949Y0|UBP6_ARATH (e_value=3e-128) Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1;; (*TAIR) AT1G51710.1 (e_value=3e-129) | Symbols: UBP6, ATUBP6 | ubiquitin-specific protease 6 | chr1:19175805-19179894 REVERSE LENGTH=482;; (*ITAG) Solyc12g044740.1.1 (e_value=3e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45436676-45448004 transcript_region:SL2.40ch12:45436676..45448004+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N1B6_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00000390g0002.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|3|0|363; (*GB) gi|252972629|dbj|BAH84783.1| (e_value=2e-143) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=1e-40) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT5G10600.1 (e_value=8e-68) | Symbols: CYP81K2 | cytochrome P450, family 81, subfamily K, polypeptide 2 | chr5:3351227-3352777 FORWARD LENGTH=516;; (*ITAG) Solyc04g078340.2.1 (e_value=3e-135) genomic_reference:SL2.40ch04 gene_region:60696429-60698416 transcript_region:SL2.40ch04:60696429..60698416+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005282g0013.1 protein AED:0.06 eAED:0.06 QI:178|0.5|0.8|0.8|1|1|5|205|262; (*GB) gi|32470656|gb|AAP45182.1| (e_value=1e-56) Putative kinesin-like protein, identical [Solanum bulbocastanum];; (*ITAG) Solyc08g075930.2.1 (e_value=7e-68) genomic_reference:SL2.40ch08 gene_region:57173960-57176619 transcript_region:SL2.40ch08:57173960..57176619- functional_description:"Kinesin-like (AHRD V1 *-*- Q6Z9U4_ORYSJ)"; NbS00015293g0010.1 protein AED:0.22 eAED:0.23 QI:36|1|0.83|1|1|0.91|12|277|751; (*GB) gi|255540279|ref|XP_002511204.1| (e_value=0.0) Conserved oligomeric Golgi complex component, putative [Ricinus communis];; (*SWP) sp|Q14746|COG2_HUMAN (e_value=7e-87) Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1;; (*TAIR) AT4G24840.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12796525-12800926 REVERSE LENGTH=756;; (*ITAG) Solyc08g006660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1243949-1246177 transcript_region:SL2.40ch08:1243949..1246177+ go_terms:GO:0008565,GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 2 (AHRD V1 ***- COG2_HUMAN); contains Interpro domain(s) IPR009316 COG complex component, COG2 "; GO:0008565,GO:0005515 NbS00015293g0009.1 protein AED:0.17 eAED:0.17 QI:138|0.66|0.75|1|1|0.75|4|0|385; (*GB) gi|255566620|ref|XP_002524294.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G43580.1 (e_value=7e-179) | Symbols: | Sphingomyelin synthetase family protein | chr1:16410673-16412612 REVERSE LENGTH=421;; (*ITAG) Solyc04g071550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56129194-56133184 transcript_region:SL2.40ch04:56129194..56133184+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009364g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|357472183|ref|XP_003606376.1| (e_value=9e-33) hypothetical protein MTR_4g059320 [Medicago truncatula];; (*TAIR) AT3G45210.1 (e_value=8e-26) | Symbols: | Protein of unknown function, DUF584 | chr3:16557482-16557928 REVERSE LENGTH=148;; (*ITAG) Solyc09g007790.1.1 (e_value=8e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:1315444-1315920 transcript_region:SL2.40ch09:1315444..1315920+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 ***- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00009364g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|100; (*GB) gi|47824933|gb|AAT38708.1| (e_value=5e-16) Putative polyprotein, identical [Solanum demissum]; NbS00009364g0003.1 protein AED:0.34 eAED:0.52 QI:0|0|0|1|0|0|2|0|81 NbS00008963g0009.1 protein AED:0.15 eAED:0.16 QI:600|0.77|0.73|1|0.77|0.68|19|238|954; (*GB) gi|296083495|emb|CBI23464.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P97868|RBBP6_MOUSE (e_value=2e-19) E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5;; (*TAIR) AT5G47430.3 (e_value=0.0) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr5:19235819-19240596 REVERSE LENGTH=889;; (*ITAG) Solyc10g083150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62336627-62344862 transcript_region:SL2.40ch10:62336627..62344862- go_terms:GO:0005634,GO:0000151 functional_description:"Retinoblastoma-binding protein 6 (Fragment) (AHRD V1 *--- C7TZR6_SCHJA); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0000151 NbS00008963g0004.1 protein AED:0.41 eAED:0.53 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|255578609|ref|XP_002530166.1| (e_value=2e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g007870.2.1 (e_value=4e-18) genomic_reference:SL2.40ch01 gene_region:2032117-2032858 transcript_region:SL2.40ch01:2032117..2032858- functional_description:"Cyclin B-like protein (AHRD V1 *-*- Q5U8T5_9SOLA)"; NbS00016274g0025.1 protein AED:0.18 eAED:0.18 QI:0|0.87|0.77|1|0.87|0.77|9|262|497; (*GB) gi|225428661|ref|XP_002284886.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262433 [Vitis vinifera];; (*TAIR) AT2G15860.1 (e_value=9e-165) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6905712-6909282 REVERSE LENGTH=512;; (*ITAG) Solyc01g108890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87788443-87793650 transcript_region:SL2.40ch01:87788443..87793650- functional_description:"Potential GTPase activation protein (AHRD V1 *-*- A8INH1_CHLRE)"; NbS00016274g0005.1 protein AED:0.28 eAED:0.30 QI:908|0|0.5|1|0|1|2|0|71; (*GB) gi|351720857|ref|NP_001237958.1| (e_value=2e-14) uncharacterized protein LOC100305614 [Glycine max];; (*ITAG) Solyc01g108910.2.1 (e_value=6e-25) genomic_reference:SL2.40ch01 gene_region:87797493-87799653 transcript_region:SL2.40ch01:87797493..87799653- functional_description:"COSII_At2g15890 (Fragment) (AHRD V1 *-*- C0KFD9_9SOLN)"; NbS00016274g0006.1 protein AED:0.32 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|5917664|gb|AAD55979.1|AF159296_1 (e_value=9e-126) extensin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9XIL9|PLRX3_ARATH (e_value=8e-98) Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1;; (*TAIR) AT2G15880.1 (e_value=6e-99) | Symbols: | Leucine-rich repeat (LRR) family protein | chr2:6918039-6920319 REVERSE LENGTH=727;; (*ITAG) Solyc01g108900.2.1 (e_value=5e-129) genomic_reference:SL2.40ch01 gene_region:87794102-87796772 transcript_region:SL2.40ch01:87794102..87796772- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00016274g0023.1 protein AED:0.20 eAED:0.21 QI:543|1|0.8|1|0.78|0.86|15|0|1070; (*GB) gi|225428655|ref|XP_002281581.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260575 [Vitis vinifera];; (*TAIR) AT2G15900.1 (e_value=0.0) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr2:6927390-6932535 FORWARD LENGTH=994;; (*ITAG) Solyc01g108920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87808978-87822932 transcript_region:SL2.40ch01:87808978..87822932+ go_terms:GO:0007154 functional_description:"Serine/threonine-protein kinase Sgk3 (AHRD V1 *--- SGK3_RAT); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00016274g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.2|0|0.5|1|1|6|0|297 NbS00016274g0019.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|1|1|2|0|125; (*GB) gi|4680282|gb|AAD27606.1|AF121902_1 (e_value=6e-16) unknown [Nicotiana repanda];; (*ITAG) Solyc11g039990.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:28096317-28096706 transcript_region:SL2.40ch11:28096317..28096706- functional_description:"Unknown Protein (AHRD V1)"; NbS00020603g0012.1 protein AED:0.20 eAED:0.20 QI:167|0.94|0.94|1|0.94|0.89|19|229|592; (*GB) gi|12585316|sp|Q9M4G4.1|PGMC_SOLTU (e_value=0.0) RecName: Full=Phosphoglucomutase, cytoplasmic; Short=PGM; AltName: Full=Glucose phosphomutase;; (*SWP) sp|Q9M4G4|PGMC_SOLTU (e_value=0.0) Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1;; (*TAIR) AT1G70730.3 (e_value=0.0) | Symbols: PGM2 | Phosphoglucomutase/phosphomannomutase family protein | chr1:26669020-26673166 REVERSE LENGTH=662;; (*ITAG) Solyc04g045340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31642460-31657602 transcript_region:SL2.40ch04:31642460..31657602+ go_terms:GO:0004614 functional_description:"Phosphoglucomutase (AHRD V1 **** Q9AUQ4_ORYSA); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614 NbS00020603g0013.1 protein AED:0.21 eAED:0.22 QI:0|1|0.85|1|1|1|7|98|470; (*GB) gi|225463065|ref|XP_002266120.1| (e_value=0.0) PREDICTED: calcium uptake protein 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|B1H2N3|MICU1_XENTR (e_value=2e-46) Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis GN=micu1 PE=2 SV=2;; (*TAIR) AT4G32060.1 (e_value=2e-165) | Symbols: | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498;; (*ITAG) Solyc02g014560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:8385076-8387112 transcript_region:SL2.40ch02:8385076..8387112+ go_terms:GO:0005515 functional_description:"Calcium binding atopy-related autoantigen 1 (AHRD V1 **-* B6SL16_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00020603g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|101; (*ITAG) Solyc08g080020.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60544916-60545230 transcript_region:SL2.40ch08:60544916..60545230+ go_terms:GO:0009611 functional_description:"Serine protease inhibitor potato inhibitor I-type family protein (AHRD V1 ***- D7LT19_ARALY); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00002966g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0.66|3|0|474; (*GB) gi|85068634|gb|ABC69397.1| (e_value=2e-143) CYP71D48v1 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=8e-143) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26330.1 (e_value=3e-98) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc08g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00031481g0010.1 protein AED:0.16 eAED:0.16 QI:166|0.81|0.70|0.94|0.75|0.76|17|0|836; (*GB) gi|359478697|ref|XP_002282314.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 24-like [Vitis vinifera];; (*SWP) sp|Q8L7S3|C3H24_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1;; (*TAIR) AT2G28450.1 (e_value=0.0) | Symbols: | zinc finger (CCCH-type) family protein | chr2:12162180-12165761 REVERSE LENGTH=809;; (*ITAG) Solyc11g069340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51024238-51035406 transcript_region:SL2.40ch11:51024238..51035406+ go_terms:GO:0006396,GO:0003676,GO:0008168,GO:0008270 functional_description:"23S rRNA (Uracil-5-)-methyltransferase (AHRD V1 *-*- D5S459_CLODI); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0006396,GO:0003676,GO:0008168,GO:0008270 NbS00031481g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.57|0.85|1|1|7|244|456; (*GB) gi|224106740|ref|XP_002314269.1| (e_value=2e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60580.3 (e_value=1e-110) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc06g016770.2.1 (e_value=2e-148) genomic_reference:SL2.40ch06 gene_region:9846556-9851018 transcript_region:SL2.40ch06:9846556..9851018+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 **-- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00007950g0008.1 protein AED:0.28 eAED:0.28 QI:131|0.77|0.73|1|0.77|0.78|23|0|902; (*GB) gi|84688912|gb|ABC61505.1| (e_value=0.0) AGO4-2, partial [Nicotiana benthamiana];; (*SWP) sp|Q9SDG8|AGO4A_ORYSJ (e_value=0.0) Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1;; (*TAIR) AT2G27040.2 (e_value=0.0) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc01g008960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2976372-2984961 transcript_region:SL2.40ch01:2976372..2984961+ go_terms:GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00007950g0007.1 protein AED:0.12 eAED:0.15 QI:0|0|0|0.75|0|0|4|0|441; (*GB) gi|82621124|gb|ABB86250.1| (e_value=1e-101) RNA-binding protein AKIP1-like [Solanum tuberosum];; (*SWP) sp|Q60668|HNRPD_MOUSE (e_value=9e-20) Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2;; (*TAIR) AT3G56860.5 (e_value=2e-79) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc01g008970.2.1 (e_value=5e-106) genomic_reference:SL2.40ch01 gene_region:2988194-2990000 transcript_region:SL2.40ch01:2988194..2990000- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00043258g0009.1 protein AED:0.28 eAED:0.30 QI:0|0.6|0.66|1|0|0.33|6|0|396; (*GB) gi|359474536|ref|XP_002278005.2| (e_value=1e-126) PREDICTED: probable transcription factor KAN2-like [Vitis vinifera];; (*SWP) sp|Q9C616|KAN2_ARATH (e_value=5e-82) Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1;; (*TAIR) AT1G32240.1 (e_value=4e-83) | Symbols: KAN2 | Homeodomain-like superfamily protein | chr1:11625882-11630355 REVERSE LENGTH=388;; (*ITAG) Solyc06g066340.2.1 (e_value=2e-131) genomic_reference:SL2.40ch06 gene_region:38018439-38024018 transcript_region:SL2.40ch06:38018439..38024018+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like protein (AHRD V1 *--- Q84UP8_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00043258g0007.1 protein AED:0.16 eAED:0.22 QI:0|0|0|1|0|0|2|0|482; (*GB) gi|54606795|dbj|BAD66818.1| (e_value=7e-71) orf774 [Beta vulgaris subsp. vulgaris];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=1e-47) DNA polymerase OS=Zea mays PE=3 SV=1;; (*TAIR) AT2G07749.1 (e_value=1e-31) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc03g013470.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:5876619-5878402 transcript_region:SL2.40ch03:5876619..5878402- go_terms:GO:0006260 functional_description:"DNA polymerase (AHRD V1 *-*- Q6QZN8_DAUCA); contains Interpro domain(s) IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus "; GO:0006260 NbS00043258g0008.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|57013961|ref|YP_173433.1| (e_value=2e-39) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*SWP) sp|P92543|M1110_ARATH (e_value=6e-17) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*ITAG) ATMG01110.1 (e_value=5e-18) | Symbols: ORF251 | Mitovirus RNA-dependent RNA polymerase | chrM:283034-283789 REVERSE LENGTH=251;; (*ITAG) Solyc11g063540.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00000908g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|325516286|gb|ADZ24721.1| (e_value=0.0) geranylgeranyl pyrophosphate synthase 4 [Solanum pennellii];; (*SWP) sp|Q39108|GGR_ARATH (e_value=1e-135) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=1e-136) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc09g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2306179-2310339 transcript_region:SL2.40ch09:2306179..2310339- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q0WUL9_ARATH); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00000908g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|0.5|2|0|505; (*GB) gi|27529726|dbj|BAC53892.1| (e_value=0.0) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|P37122|C76A2_SOLME (e_value=0.0) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=5e-148) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc09g008910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2303994-2305720 transcript_region:SL2.40ch09:2303994..2305720+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004023g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|590; (*GB) gi|225470674|ref|XP_002269391.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera];; (*SWP) sp|Q9SMZ2|PP347_ARATH (e_value=1e-116) Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1;; (*TAIR) AT4G33170.1 (e_value=9e-118) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15995701-15998673 REVERSE LENGTH=990;; (*ITAG) Solyc07g008890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3860404-3862176 transcript_region:SL2.40ch07:3860404..3862176- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00004023g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0.5|2|394|118; (*GB) gi|224134486|ref|XP_002327417.1| (e_value=3e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6P2Q9|PRP8_HUMAN (e_value=2e-53) Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=6e-68) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=5e-80) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00004023g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|120; (*GB) gi|294462830|gb|ADE76957.1| (e_value=1e-76) unknown [Picea sitchensis];; (*SWP) sp|Q6P2Q9|PRP8_HUMAN (e_value=6e-54) Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=8e-74) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=4e-74) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00004023g0008.1 protein AED:0.47 eAED:0.60 QI:0|0|0|1|0|0|2|0|65 NbS00006805g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.42|1|1|1|7|0|457; (*GB) gi|374250713|gb|AEY99979.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|P49101|CDPK2_MAIZE (e_value=0.0) Calcium-dependent protein kinase 2 OS=Zea mays GN=CPK2 PE=2 SV=1;; (*TAIR) AT3G20410.1 (e_value=0.0) | Symbols: CPK9 | calmodulin-domain protein kinase 9 | chr3:7116388-7118824 FORWARD LENGTH=541;; (*ITAG) Solyc07g064610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63903803-63909109 transcript_region:SL2.40ch07:63903803..63909109+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q944W9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00006805g0011.1 protein AED:0.10 eAED:0.10 QI:111|1|1|1|0.75|0.8|5|264|228; (*GB) gi|297737435|emb|CBI26636.3| (e_value=1e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GT75|NIP1_ARATH (e_value=2e-31) NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2;; (*TAIR) AT3G20395.1 (e_value=4e-37) | Symbols: | RING/U-box superfamily protein | chr3:7112020-7113792 REVERSE LENGTH=223;; (*ITAG) Solyc12g005020.1.1 (e_value=2e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:10618-11752 transcript_region:SL2.40ch12:10618..11752- go_terms:GO:0005141 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005141 NbS00006805g0004.1 protein AED:0.29 eAED:0.29 QI:186|1|1|1|0.83|0.92|13|487|433; (*GB) gi|225460965|ref|XP_002280015.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera];; (*TAIR) AT1G50710.1 (e_value=0.0) | Symbols: | unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:18784719-18787615 REVERSE LENGTH=423;; (*ITAG) Solyc12g005050.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:22130-27629 transcript_region:SL2.40ch12:22130..27629- functional_description:"HAUS augmin-like complex subunit 4 (AHRD V1 *-*- HAUS4_HUMAN)"; NbS00022003g0006.1 protein AED:0.27 eAED:0.27 QI:210|0.66|0.5|1|0.33|0.5|4|0|138; (*GB) gi|255555853|ref|XP_002518962.1| (e_value=4e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G73940.1 (e_value=6e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27798519-27799522 REVERSE LENGTH=151;; (*ITAG) Solyc02g062530.2.1 (e_value=5e-18) genomic_reference:SL2.40ch02 gene_region:28798345-28800697 transcript_region:SL2.40ch02:28798345..28800697- functional_description:"Os03g0852500 protein (Fragment) (AHRD V1 ***- Q0DLQ0_ORYSJ)"; NbS00022003g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|165905462|dbj|BAF98996.1| (e_value=7e-31) nucleoporin 98 [Daucus carota];; (*TAIR) AT1G59660.1 (e_value=2e-29) | Symbols: | Nucleoporin autopeptidase | chr1:21924693-21929233 FORWARD LENGTH=997;; (*ITAG) Solyc04g007280.2.1 (e_value=1e-36) genomic_reference:SL2.40ch04 gene_region:990913-1002634 transcript_region:SL2.40ch04:990913..1002634+ go_terms:GO:0005215 functional_description:"Nup98 protein (Fragment) (AHRD V1 *--- Q68G59_MOUSE); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbC24913444g0001.1 protein AED:0.29 eAED:0.45 QI:4|0|0|1|0|0|2|41|34 NbS00001121g0011.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|474; (*GB) gi|255568653|ref|XP_002525300.1| (e_value=1e-136) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G65910.1 (e_value=2e-90) | Symbols: | BSD domain-containing protein | chr5:26361592-26363341 REVERSE LENGTH=432;; (*ITAG) Solyc02g092160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47921198-47925383 transcript_region:SL2.40ch02:47921198..47925383- functional_description:"BSD domain containing protein (AHRD V1 ***- B6TCH2_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00001121g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|317; (*GB) gi|255538000|ref|XP_002510065.1| (e_value=4e-111) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SY57|P2A10_ARATH (e_value=1e-92) Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1;; (*TAIR) AT1G10150.1 (e_value=1e-93) | Symbols: | Carbohydrate-binding protein | chr1:3326160-3327404 FORWARD LENGTH=414;; (*ITAG) Solyc02g092140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47909832-47911085 transcript_region:SL2.40ch02:47909832..47911085- functional_description:"Phloem protein (Fragment) (AHRD V1 *--- C6FDA1_PSEMZ)"; NbS00009458g0004.1 protein AED:0.00 eAED:0.00 QI:107|1|0.5|1|0|0|2|0|437; (*GB) gi|82623383|gb|ABB87106.1| (e_value=0.0) eukaryotic peptide chain release factor subunit 1-3-like [Solanum tuberosum];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc11g006660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1269001-1270314 transcript_region:SL2.40ch11:1269001..1270314+ go_terms:GO:0005737 functional_description:"Eukaryotic peptide chain release factor subunit 1-3-like (AHRD V1 ***- Q2VCK6_SOLTU); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0005737 NbS00009458g0016.1 protein AED:0.27 eAED:0.35 QI:244|0|0.5|1|0|0|2|292|51 NbS00009458g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|225464408|ref|XP_002269135.1| (e_value=4e-72) PREDICTED: uncharacterized protein LOC100244711 [Vitis vinifera];; (*TAIR) AT5G04820.1 (e_value=5e-55) | Symbols: ATOFP13, OFP13 | ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260;; (*ITAG) Solyc11g006670.1.1 (e_value=7e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1276863-1277597 transcript_region:SL2.40ch11:1276863..1277597- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 **-- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00009458g0017.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|870; (*GB) gi|224113403|ref|XP_002316485.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=5e-13) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT3G52490.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc11g006650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1258943-1261938 transcript_region:SL2.40ch11:1258943..1261938- go_terms:GO:0019538 functional_description:"Heat shock protein 101 (AHRD V1 *-*- Q3L1D0_VITVI); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00009458g0014.1 protein AED:0.40 eAED:0.72 QI:0|0|0.5|1|1|1|2|43|61 NbS00020801g0017.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|329; (*GB) gi|356572746|ref|XP_003554527.1| (e_value=5e-157) PREDICTED: epoxide hydrolase 2-like [Glycine max];; (*SWP) sp|P34913|HYES_HUMAN (e_value=1e-51) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT4G02340.1 (e_value=2e-149) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc09g075300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62527596-62531494 transcript_region:SL2.40ch09:62527596..62531494+ go_terms:GO:0004301 functional_description:"Epoxide hydrolase 2 (AHRD V1 **** D8L7V8_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00020801g0014.1 protein AED:0.15 eAED:0.15 QI:0|1|0.8|1|1|1|5|529|224; (*GB) gi|255564218|ref|XP_002523106.1| (e_value=3e-121) 60S ribosomal protein L18, putative [Ricinus communis];; (*SWP) sp|P42791|RL182_ARATH (e_value=2e-118) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2;; (*TAIR) AT3G05590.1 (e_value=2e-119) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187;; (*ITAG) Solyc01g099900.2.1 (e_value=7e-118) genomic_reference:SL2.40ch01 gene_region:81786875-81789836 transcript_region:SL2.40ch01:81786875..81789836+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e "; GO:0003735,GO:0003723 NbS00020801g0005.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|795; (*GB) gi|225437418|ref|XP_002271146.1| (e_value=0.0) PREDICTED: probable exocyst complex component 6 [Vitis vinifera];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=0.0) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT4G02350.1 (e_value=0.0) | Symbols: SEC15B | exocyst complex component sec15B | chr4:1038157-1040571 FORWARD LENGTH=787;; (*ITAG) Solyc09g075280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62512212-62514626 transcript_region:SL2.40ch09:62512212..62514626- go_terms:GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0000145 NbS00020801g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225450691|ref|XP_002283241.1| (e_value=7e-54) PREDICTED: uncharacterized protein LOC100263080 [Vitis vinifera];; (*TAIR) AT4G02370.1 (e_value=5e-47) | Symbols: | Protein of unknown function, DUF538 | chr4:1042458-1042961 FORWARD LENGTH=167;; (*ITAG) Solyc06g009150.1.1 (e_value=6e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3095005-3095484 transcript_region:SL2.40ch06:3095005..3095484- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00020801g0011.1 protein AED:0.58 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|81301622|ref|YP_398917.1| (e_value=9e-16) hypothetical protein NitoCp121 [Nicotiana tomentosiformis];; (*ITAG) Solyc11g021160.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13374126-13374965 transcript_region:SL2.40ch11:13374126..13374965+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020801g0018.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|0|0|2|0|69; (*GB) gi|108802688|ref|YP_636345.1| (e_value=4e-23) hypothetical protein EuglglCp070 [Eucalyptus globulus subsp. globulus];; (*SWP) sp|Q49KT9|YCF68_EUCGG (e_value=1e-24) Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1;; (*ITAG) Solyc01g007720.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:1898832-1899766 transcript_region:SL2.40ch01:1898832..1899766+ functional_description:"ORF42f (AHRD V1 *-*- Q32989_PINTH)"; NbS00035357g0002.1 protein AED:0.28 eAED:0.36 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|57013900|ref|YP_173374.1| (e_value=2e-57) hypothetical protein NitaMp027 [Nicotiana tabacum];; (*SWP) sp|P93276|M030_ARATH (e_value=4e-33) Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1;; (*ITAG) ATMG00030.1 (e_value=3e-34) | Symbols: ORF107A | hypothetical protein | chrM:11918-12241 FORWARD LENGTH=107;; (*ITAG) Solyc10g048060.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:39359054-39359497 transcript_region:SL2.40ch10:39359054..39359497- functional_description:"Uncharacterized mitochondrial protein AtMg00030 (AHRD V1 *-*- M030_ARATH)"; NbS00035357g0001.1 protein AED:0.39 eAED:0.80 QI:0|0|0|1|0|0|2|0|76 NbS00002319g0007.1 protein AED:0.31 eAED:0.33 QI:49|0.8|0.66|0.83|0.6|0.66|6|0|133; (*GB) gi|255567192|ref|XP_002524577.1| (e_value=5e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07565.1 (e_value=1e-50) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=258;; (*ITAG) Solyc09g020000.2.1 (e_value=2e-65) genomic_reference:SL2.40ch09 gene_region:18083123-18106956 transcript_region:SL2.40ch09:18083123..18106956- functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *-*- Q9SRQ9_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; NbS00038353g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.66|3|0|534; (*GB) gi|10444388|gb|AAG17888.1| (e_value=0.0) dihydrolipoamide dehydrogenase precursor [Solanum tuberosum];; (*SWP) sp|Q9M5K3|DLDH1_ARATH (e_value=0.0) Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2;; (*TAIR) AT1G48030.2 (e_value=0.0) | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase 1 | chr1:17717432-17719141 REVERSE LENGTH=507;; (*ITAG) Solyc12g099100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64711180-64716181 transcript_region:SL2.40ch12:64711180..64716181+ go_terms:GO:0005737,GO:0055114 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q9FEN7_SOLTU); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005737,GO:0055114 NbS00038353g0005.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.75|1|1|4|0|158; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=1e-17) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc12g009460.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00001831g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|10241920|dbj|BAB13719.1| (e_value=4e-100) TBZF [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-27) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G62420.1 (e_value=4e-48) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc01g079480.2.1 (e_value=1e-96) genomic_reference:SL2.40ch01 gene_region:71029166-71030328 transcript_region:SL2.40ch01:71029166..71030328- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* Q1HW69_CAPAN); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00003515g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.9|0.80|1|1|1|21|97|1138; (*GB) gi|297742170|emb|CBI33957.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G47020.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19082005-19089800 FORWARD LENGTH=1421;; (*ITAG) Solyc08g077430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58470265-58491077 transcript_region:SL2.40ch08:58470265..58491077+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7MQL9_ARALY)"; NbS00013434g0002.1 protein AED:0.19 eAED:0.24 QI:0|0.66|0.75|1|1|1|4|16|377; (*GB) gi|50058115|dbj|BAD27408.1| (e_value=0.0) actin [Nicotiana tabacum];; (*SWP) sp|P30173|ACT13_SOLTU (e_value=0.0) Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc01g104770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00013434g0017.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.66|0.5|0.66|3|0|496; (*GB) gi|225460674|ref|XP_002266272.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100259010 [Vitis vinifera];; (*TAIR) AT1G21200.1 (e_value=4e-57) | Symbols: | sequence-specific DNA binding transcription factors | chr1:7421483-7422814 FORWARD LENGTH=443;; (*ITAG) Solyc01g104760.2.1 (e_value=5e-126) genomic_reference:SL2.40ch01 gene_region:84891715-84892996 transcript_region:SL2.40ch01:84891715..84892996- go_terms:GO:0003700 functional_description:"Homeodomain-like (AHRD V1 *-*- A7UQU9_MEDTR)"; GO:0003700 NbS00013434g0016.1 protein AED:0.91 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|73 NbS00013434g0013.1 protein AED:0.28 eAED:0.32 QI:446|0.33|0.42|1|0.5|0.42|7|0|422; (*GB) gi|225447793|ref|XP_002266692.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera];; (*SWP) sp|Q75HX5|TLP8_ORYSJ (e_value=0.0) Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1;; (*TAIR) AT1G25280.1 (e_value=0.0) | Symbols: AtTLP10, TLP10 | tubby like protein 10 | chr1:8864961-8866608 FORWARD LENGTH=445;; (*ITAG) Solyc01g104670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84851303-84854182 transcript_region:SL2.40ch01:84851303..84854182- go_terms:GO:0008020 functional_description:"Tubby-like F-box protein 8 (AHRD V1 ***- TLP8_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0008020 NbS00013434g0014.1 protein AED:0.08 eAED:0.34 QI:126|0|0.5|1|1|1|2|0|133 NbS00008576g0002.1 protein AED:0.21 eAED:0.21 QI:18|1|1|1|0.57|0.75|8|611|387; (*GB) gi|255553905|ref|XP_002517993.1| (e_value=0.0) vacuolar membrane protein pep3, putative [Ricinus communis];; (*SWP) sp|P59015|VPS18_DANRE (e_value=2e-80) Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2;; (*TAIR) AT1G12470.1 (e_value=0.0) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00008576g0110.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.66|1|1|1|6|246|1109 NbS00008576g0111.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|0.75|0.33|0.25|4|0|251 NbS00008576g0112.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.5|0.75|0.33|0.75|4|363|129 NbS00043415g0003.1 protein AED:0.16 eAED:0.16 QI:146|0.87|0.77|1|0.75|0.66|9|386|546; (*GB) gi|225428574|ref|XP_002281100.1| (e_value=3e-172) PREDICTED: uncharacterized protein LOC100255635 [Vitis vinifera];; (*TAIR) AT5G66600.2 (e_value=2e-130) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26577954 REVERSE LENGTH=594;; (*ITAG) Solyc10g051030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46857362-46859735 transcript_region:SL2.40ch10:46857362..46859735- functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00025379g0003.1 protein AED:0.21 eAED:0.22 QI:765|0.66|0.42|0.85|0.5|0.71|7|0|307; (*GB) gi|359482283|ref|XP_002264701.2| (e_value=7e-162) PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Vitis vinifera];; (*SWP) sp|Q93ZG7|RH38_ARATH (e_value=6e-126) DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2;; (*TAIR) AT3G53110.1 (e_value=4e-127) | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496;; (*ITAG) Solyc10g085790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64195607-64200611 transcript_region:SL2.40ch10:64195607..64200611+ go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00007661g0017.1 protein AED:0.07 eAED:0.07 QI:112|0.5|0.33|0.66|1|1|3|0|93; (*GB) gi|225426532|ref|XP_002278708.1| (e_value=1e-16) PREDICTED: probable beta-1,3-galactosyltransferase 6 [Vitis vinifera]; NbS00007661g0019.1 protein AED:0.18 eAED:0.18 QI:34|0.90|0.91|1|1|0.91|12|402|1023; (*GB) gi|22329468|ref|NP_172510.2| (e_value=0.0) Nucleoporin autopeptidase [Arabidopsis thaliana];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=2e-26) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G10390.2 (e_value=0.0) | Symbols: | Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041;; (*ITAG) Solyc04g007280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:990913-1002634 transcript_region:SL2.40ch04:990913..1002634+ go_terms:GO:0005215 functional_description:"Nup98 protein (Fragment) (AHRD V1 *--- Q68G59_MOUSE); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00007661g0022.1 protein AED:0.19 eAED:0.19 QI:210|0.5|0.4|1|0.25|0.2|5|1029|28 NbS00007661g0020.1 protein AED:0.01 eAED:0.01 QI:7|1|1|1|0.5|0.33|3|19|184; (*GB) gi|359473986|ref|XP_002277877.2| (e_value=1e-93) PREDICTED: uncharacterized protein LOC100261608 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=7e-17) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT2G18196.1 (e_value=6e-85) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr2:7920793-7922268 REVERSE LENGTH=178;; (*ITAG) Solyc08g075880.2.1 (e_value=3e-112) genomic_reference:SL2.40ch08 gene_region:57133149-57134844 transcript_region:SL2.40ch08:57133149..57134844- go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- D7LYP1_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00015348g0008.1 protein AED:0.06 eAED:0.06 QI:104|0.5|0.66|1|0|0.33|3|271|168; (*GB) gi|224133762|ref|XP_002327674.1| (e_value=5e-65) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80160.1 (e_value=3e-39) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc02g084410.2.1 (e_value=6e-73) genomic_reference:SL2.40ch02 gene_region:42103207-42104607 transcript_region:SL2.40ch02:42103207..42104607+ go_terms:GO:0004462 functional_description:"Glyoxalase (AHRD V1 ***- B4ERW1_WHEAT); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00015348g0001.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-21) hypothetical protein [Nicotiana tabacum]; NbC25688148g0004.1 protein AED:0.03 eAED:0.04 QI:0|1|0|1|1|1|2|0|146; (*GB) gi|350538187|ref|NP_001233819.1| (e_value=1e-81) xyloglucan endotransglucosylase-hydrolase XTH6 precursor [Solanum lycopersicum];; (*SWP) sp|P93046|XTH31_ARATH (e_value=3e-65) Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2;; (*TAIR) AT3G44990.1 (e_value=2e-66) | Symbols: XTR8, ATXTR8, XTH31 | xyloglucan endo-transglycosylase-related 8 | chr3:16447280-16448678 REVERSE LENGTH=293;; (*ITAG) Solyc11g066270.1.1 (e_value=2e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49084774-49086878 transcript_region:SL2.40ch11:49084774..49086878+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 ***- C0IRI2_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00013357g0008.1 protein AED:0.25 eAED:0.25 QI:329|0.5|0.55|1|0.5|0.44|9|795|806; (*GB) gi|224064494|ref|XP_002301504.1| (e_value=5e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|O04251|Y4211_ARATH (e_value=5e-57) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT4G02110.1 (e_value=4e-58) | Symbols: | transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329;; (*ITAG) Solyc06g009680.2.1 (e_value=5e-97) genomic_reference:SL2.40ch06 gene_region:3623643-3632157 transcript_region:SL2.40ch06:3623643..3632157- go_terms:GO:0008270,GO:0005622 functional_description:"BRCT domain-containing protein (AHRD V1 *--- C5FMN4_NANOT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00013357g0006.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|98 NbS00029509g0002.1 protein AED:0.04 eAED:0.04 QI:245|1|1|1|0.8|0.66|6|317|177; (*GB) gi|255557090|ref|XP_002519577.1| (e_value=2e-67) Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*TAIR) AT1G66070.2 (e_value=5e-50) | Symbols: | Translation initiation factor eIF3 subunit | chr1:24596194-24597520 REVERSE LENGTH=226;; (*ITAG) Solyc02g079060.2.1 (e_value=4e-61) genomic_reference:SL2.40ch02 gene_region:38263644-38270218 transcript_region:SL2.40ch02:38263644..38270218- functional_description:"Eukaryotic translation initiation factor 3 subunit J (AHRD V1 *-*- B9ENH4_SALSA); contains Interpro domain(s) IPR013906 Translation initiation factor eIF3 subunit "; NbS00006230g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|1|2|127|129 NbS00010862g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|156; (*GB) gi|224120404|ref|XP_002318321.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|B9SXY8|CSPLE_RICCO (e_value=3e-21) CASP-like protein RCOM_1206790 OS=Ricinus communis GN=RCOM_1206790 PE=3 SV=1;; (*TAIR) AT2G39530.1 (e_value=1e-17) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16498659-16499401 REVERSE LENGTH=178;; (*ITAG) Solyc03g098090.1.1 (e_value=8e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53885174-53886087 transcript_region:SL2.40ch03:53885174..53886087- functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00010862g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.73|0.74|0.96|0.96|0.93|31|492|1014; (*GB) gi|224126655|ref|XP_002319892.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6P5F9|XPO1_MOUSE (e_value=0.0) Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1;; (*TAIR) AT5G17020.1 (e_value=0.0) | Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1075;; (*ITAG) Solyc03g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "; GO:0005049 NbS00044689g0003.1 protein AED:0.05 eAED:0.05 QI:355|1|1|1|1|1|6|76|344; (*GB) gi|225428745|ref|XP_002285039.1| (e_value=0.0) PREDICTED: nodulation protein H [Vitis vinifera];; (*TAIR) AT2G15730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc01g108510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87573558-87580500 transcript_region:SL2.40ch01:87573558..87580500- functional_description:"Nodulation protein H (AHRD V1 ***- NOH4_RHIME)"; NbS00054746g0007.1 protein AED:0.17 eAED:0.18 QI:0|1|0.33|1|1|1|3|0|201; (*GB) gi|387600864|gb|AFJ92923.1| (e_value=6e-128) Tau2 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=2e-109) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.3 (e_value=3e-110) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261;; (*ITAG) Solyc11g012710.1.1 (e_value=1e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5480835-5484323 transcript_region:SL2.40ch11:5480835..5484323+ functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 ***- C1BJ92_OSMMO); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; NbS00054746g0006.1 protein AED:0.18 eAED:0.19 QI:0|0.6|0.33|1|1|1|6|0|780; (*GB) gi|359496107|ref|XP_002273768.2| (e_value=0.0) PREDICTED: oligopeptide transporter 3-like [Vitis vinifera];; (*SWP) sp|O23482|OPT3_ARATH (e_value=0.0) Oligopeptide transporter 3 OS=Arabidopsis thaliana GN=OPT3 PE=2 SV=3;; (*TAIR) AT4G16370.1 (e_value=0.0) | Symbols: ATOPT3, OPT3 | oligopeptide transporter | chr4:9247514-9250071 REVERSE LENGTH=737;; (*ITAG) Solyc11g012700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5469691-5473409 transcript_region:SL2.40ch11:5469691..5473409+ go_terms:GO:0055085 functional_description:"Oligopeptide transporter 9 (AHRD V1 ***- B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0055085 NbS00022527g0006.1 protein AED:0.15 eAED:0.15 QI:78|1|1|1|0.75|0.6|5|697|72; (*GB) gi|255582654|ref|XP_002532106.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G01350.1 (e_value=4e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:145865-146911 REVERSE LENGTH=72; NbS00030515g0004.1 protein AED:0.05 eAED:0.05 QI:208|0.87|0.88|1|0.87|0.77|9|118|643; (*GB) gi|38492172|gb|AAR22388.1| (e_value=0.0) ANT-like protein [Nicotiana tabacum];; (*SWP) sp|Q38914|ANT_ARATH (e_value=6e-154) AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2;; (*TAIR) AT4G37750.1 (e_value=4e-155) | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type DNA-binding superfamily protein | chr4:17739782-17742189 FORWARD LENGTH=555;; (*ITAG) Solyc04g077490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60022685-60026057 transcript_region:SL2.40ch04:60022685..60026057- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00033334g0007.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0.5|0|3|0|248; (*GB) gi|225465785|ref|XP_002268387.1| (e_value=3e-105) PREDICTED: HBS1-like protein-like [Vitis vinifera];; (*SWP) sp|Q2KHZ2|HBS1L_BOVIN (e_value=1e-50) HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1;; (*TAIR) AT5G10630.1 (e_value=3e-104) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=9e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00033334g0006.1 protein AED:0.55 eAED:0.55 QI:28|0|0|1|1|1|2|0|104; (*GB) gi|90398972|emb|CAJ86244.1| (e_value=1e-17) H0801D08.2 [Oryza sativa Indica Group];; (*TAIR) AT5G10630.1 (e_value=9e-17) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc12g036410.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbS00016446g0003.1 protein AED:0.00 eAED:0.00 QI:48|1|1|1|1|1|2|0|150; (*ITAG) Solyc07g052950.2.1 (e_value=2e-50) genomic_reference:SL2.40ch07 gene_region:58677015-58677570 transcript_region:SL2.40ch07:58677015..58677570- functional_description:"Unknown Protein (AHRD V1)"; NbS00007363g0009.1 protein AED:0.21 eAED:0.21 QI:35|0.93|0.87|1|0.93|0.93|16|490|795; (*GB) gi|297742936|emb|CBI35803.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NQ79|ARID4_ARATH (e_value=0.0) AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana GN=ARID4 PE=2 SV=1;; (*TAIR) AT3G43240.1 (e_value=0.0) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr3:15210032-15214440 REVERSE LENGTH=747;; (*ITAG) Solyc12g049570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46653181-46660991 transcript_region:SL2.40ch12:46653181..46660991- go_terms:GO:0008270,GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (Fragment) (AHRD V1 **-- A9TE17_PHYPA); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0008270,GO:0005622 NbS00007363g0006.1 protein AED:0.31 eAED:0.31 QI:220|0|0.5|1|1|1|2|0|391; (*GB) gi|310892550|gb|ADP37417.1| (e_value=3e-146) ethylene-responsive-element-binding factor 2 [Petunia x hybrida];; (*SWP) sp|Q9SSA8|RA212_ARATH (e_value=8e-47) Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1;; (*TAIR) AT1G53910.3 (e_value=3e-48) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356;; (*ITAG) Solyc12g049560.1.1 (e_value=4e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46647808-46650026 transcript_region:SL2.40ch12:46647808..46650026- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00002698g0005.1 protein AED:0.20 eAED:0.23 QI:0|1|0.5|1|1|1|4|0|438; (*GB) gi|147823113|emb|CAN73021.1| (e_value=0.0) hypothetical protein VITISV_004049 [Vitis vinifera];; (*SWP) sp|Q9SJ85|Y2474_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2;; (*TAIR) AT2G04740.1 (e_value=0.0) | Symbols: | ankyrin repeat family protein | chr2:1657137-1659563 FORWARD LENGTH=578;; (*ITAG) Solyc07g049590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57248597-57253470 transcript_region:SL2.40ch07:57248597..57253470+ go_terms:GO:0005515 functional_description:"Ankyrin repeat and BTB/POZ domain protein (AHRD V1 *-*- A1CMQ3_ASPCL); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00002698g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|89; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=2e-28) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=2e-25) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=2e-28) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00031817g0011.1 protein AED:0.05 eAED:0.06 QI:0|1|0|1|1|1|2|0|1016; (*GB) gi|359496629|ref|XP_002263151.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2-like [Vitis vinifera];; (*SWP) sp|C0LGX3|HSL2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1;; (*TAIR) AT5G65710.1 (e_value=0.0) | Symbols: HSL2 | HAESA-like 2 | chr5:26292372-26295440 FORWARD LENGTH=993;; (*ITAG) Solyc02g091860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47680371-47685222 transcript_region:SL2.40ch02:47680371..47685222+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00031817g0012.1 protein AED:0.21 eAED:0.22 QI:3|0.66|0.75|1|0.66|0.75|4|0|284; (*GB) gi|390341332|ref|XP_784342.3| (e_value=3e-149) PREDICTED: tubulin alpha-1 chain-like [Strongylocentrotus purpuratus];; (*SWP) sp|Q6VAG0|TBA2_GOSHI (e_value=1e-149) Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1;; (*TAIR) AT4G14960.1 (e_value=1e-149) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc08g006890.2.1 (e_value=4e-149) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00008371g0003.1 protein AED:0.08 eAED:0.12 QI:0|0|0.33|1|0|0.33|3|618|155; (*GB) gi|388497266|gb|AFK36699.1| (e_value=1e-16) unknown [Lotus japonicus];; (*TAIR) AT1G08500.1 (e_value=1e-14) | Symbols: ENODL18, AtENODL18 | early nodulin-like protein 18 | chr1:2689110-2689881 FORWARD LENGTH=228;; (*ITAG) Solyc11g062350.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46395469-46397262 transcript_region:SL2.40ch11:46395469..46397262- go_terms:GO:0009055 functional_description:"Plastocyanin-like domain containing protein expressed (AHRD V1 **-- Q2QRP3_ORYSJ); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00007571g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|0.5|0.33|3|0|379; (*GB) gi|260177092|gb|ACX33889.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=0.0) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc06g083700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45324280-45326049 transcript_region:SL2.40ch06:45324280..45326049- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00007571g0008.1 protein AED:0.33 eAED:0.33 QI:127|1|1|1|1|1|5|214|180; (*GB) gi|225437910|ref|XP_002267052.1| (e_value=6e-73) PREDICTED: glutaredoxin-C5, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8GWS0|GRXC5_ARATH (e_value=7e-59) Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=1 SV=1;; (*TAIR) AT4G28730.1 (e_value=6e-60) | Symbols: | Glutaredoxin family protein | chr4:14199174-14200712 FORWARD LENGTH=174;; (*ITAG) Solyc06g083690.2.1 (e_value=8e-109) genomic_reference:SL2.40ch06 gene_region:45316527-45321489 transcript_region:SL2.40ch06:45316527..45321489- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 *-*- B5A8A6_WHEAT); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0045454 NbS00007571g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|154; (*ITAG) Solyc01g058710.1.1 (e_value=9e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:60769677-60771321 transcript_region:SL2.40ch01:60769677..60771321+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026591g0004.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.33|1|1|0.66|3|726|1202; (*GB) gi|224082117|ref|XP_002306571.1| (e_value=3e-72) methyl binding domain protein [Populus trichocarpa];; (*SWP) sp|Q9LME6|MBD8_ARATH (e_value=4e-20) Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1;; (*TAIR) AT1G22310.2 (e_value=3e-21) | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 | chr1:7881714-7883644 REVERSE LENGTH=524;; (*ITAG) Solyc04g074250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57830787-57838718 transcript_region:SL2.40ch04:57830787..57838718- go_terms:GO:0003677,GO:0005622 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9H725_POPTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003677,GO:0005622 NbS00049504g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|350539952|ref|NP_001234590.1| (e_value=2e-90) TCP transcription factor 18 [Solanum lycopersicum];; (*SWP) sp|Q9LSD5|TCP20_ARATH (e_value=3e-55) Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1;; (*TAIR) AT3G27010.1 (e_value=2e-56) | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | chr3:9957810-9958754 REVERSE LENGTH=314;; (*ITAG) Solyc02g068200.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32795698-32796516 transcript_region:SL2.40ch02:32795698..32796516+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00027563g0006.1 protein AED:0.28 eAED:0.28 QI:191|0.85|0.87|0.87|0.28|0.37|8|0|193; (*GB) gi|4959712|gb|AAD34459.1|AF136010_1 (e_value=4e-123) SPP30 [Solanum chacoense];; (*SWP) sp|Q54YG5|TPPC5_DICDI (e_value=2e-77) Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1;; (*TAIR) AT5G58030.1 (e_value=8e-123) | Symbols: | Transport protein particle (TRAPP) component | chr5:23487021-23488483 REVERSE LENGTH=195;; (*ITAG) Solyc04g015050.2.1 (e_value=2e-126) genomic_reference:SL2.40ch04 gene_region:5249508-5255638 transcript_region:SL2.40ch04:5249508..5255638+ functional_description:"Trafficking protein particle complex subunit 5 (AHRD V1 ***- C1BHU1_ONCMY); contains Interpro domain(s) IPR016696 TRAPP I complex, Trs31 "; NbS00027563g0002.1 protein AED:0.25 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|255580264|ref|XP_002530962.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g012740.1.1 (e_value=3e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5494026-5508912 transcript_region:SL2.40ch11:5494026..5508912- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00011395g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|298257683|gb|ADI71977.1| (e_value=3e-74) E3 ubiquitin ligase [Capsicum annuum];; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=6e-60) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=5e-61) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc12g094690.1.1 (e_value=2e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63182256-63182816 transcript_region:SL2.40ch12:63182256..63182816+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011395g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|0.75|1|1|4|0|318; (*GB) gi|359491840|ref|XP_002271454.2| (e_value=1e-117) PREDICTED: serine/threonine-protein kinase PBS1-like [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-94) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G20650.1 (e_value=3e-104) | Symbols: | Protein kinase superfamily protein | chr1:7158422-7160022 REVERSE LENGTH=381;; (*ITAG) Solyc12g094680.1.1 (e_value=4e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63176558-63179315 transcript_region:SL2.40ch12:63176558..63179315+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00022644g0003.1 protein AED:0.50 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|87; (*TAIR) AT1G65295.1 (e_value=2e-13) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24251567-24252054 FORWARD LENGTH=115;; (*ITAG) Solyc11g008910.1.1 (e_value=1e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3082215-3083106 transcript_region:SL2.40ch11:3082215..3083106+ functional_description:"Cysteine-rich peptide (AHRD V1 ***- D7NXT9_WHEAT)"; NbS00022644g0010.1 protein AED:0.18 eAED:0.20 QI:0|0.63|0.58|0.91|0.90|0.83|12|0|550; (*GB) gi|224117802|ref|XP_002331635.1| (e_value=0.0) methylenetetrahydrofolate reductase [Populus trichocarpa];; (*SWP) sp|Q75HE6|MTHR_ORYSJ (e_value=0.0) Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1;; (*TAIR) AT3G59970.3 (e_value=0.0) | Symbols: MTHFR1 | methylenetetrahydrofolate reductase 1 | chr3:22151303-22154323 FORWARD LENGTH=592;; (*ITAG) Solyc05g055730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64400295-64405599 transcript_region:SL2.40ch05:64400295..64405599- go_terms:GO:0005515,GO:0004489 functional_description:"Methylenetetrahydrofolate reductase (AHRD V1 **** A5ATB7_VITVI); contains Interpro domain(s) IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase "; GO:0005515,GO:0004489 NbS00022644g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|3|0|401; (*GB) gi|297847926|ref|XP_002891844.1| (e_value=4e-149) hypothetical protein ARALYDRAFT_892557 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=6e-116) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=5e-150) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc11g008860.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3041039-3043027 transcript_region:SL2.40ch11:3041039..3043027+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00026683g0007.1 protein AED:0.12 eAED:0.14 QI:0|0.88|0.8|1|1|1|10|24|673; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|O22040|ANP1_ARATH (e_value=2e-64) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=3e-177) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc02g090430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46568708-46573422 transcript_region:SL2.40ch02:46568708..46573422+ go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00026683g0002.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0.33|1|1|1|3|0|237; (*GB) gi|356511738|ref|XP_003524580.1| (e_value=1e-104) PREDICTED: 50S ribosomal protein L25-like [Glycine max];; (*SWP) sp|Q2NAN1|RL25_ERYLH (e_value=1e-15) 50S ribosomal protein L25 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplY PE=3 SV=1;; (*TAIR) AT5G66860.1 (e_value=1e-95) | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr5:26701233-26702531 REVERSE LENGTH=249;; (*ITAG) Solyc02g090420.2.1 (e_value=8e-151) genomic_reference:SL2.40ch02 gene_region:46560506-46563942 transcript_region:SL2.40ch02:46560506..46563942+ go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L25 (AHRD V1 ***- Q0EYU4_9PROT); contains Interpro domain(s) IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "; GO:0005840,GO:0006412 NbS00047463g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|255541222|ref|XP_002511675.1| (e_value=2e-46) Auxin-induced protein X10A, putative [Ricinus communis];; (*SWP) sp|P33079|A10A5_SOYBN (e_value=3e-16) Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=2e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079150.1.1 (e_value=4e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59962300-59962788 transcript_region:SL2.40ch08:59962300..59962788+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00047463g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|28|162; (*GB) gi|255541222|ref|XP_002511675.1| (e_value=7e-46) Auxin-induced protein X10A, putative [Ricinus communis];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=3e-16) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=3e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079150.1.1 (e_value=9e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59962300-59962788 transcript_region:SL2.40ch08:59962300..59962788+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00047463g0007.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|125591013|gb|EAZ31363.1| (e_value=5e-35) hypothetical protein OsJ_15489 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SV31|PIP25_ARATH (e_value=5e-27) Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1;; (*TAIR) AT3G54820.1 (e_value=4e-28) | Symbols: PIP2D, PIP2;5 | plasma membrane intrinsic protein 2;5 | chr3:20302117-20303738 FORWARD LENGTH=286;; (*ITAG) Solyc09g007760.2.1 (e_value=6e-29) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00038654g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|326517992|dbj|BAK07248.1| (e_value=3e-45) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=6e-43) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=5e-44) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc07g006430.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1245745-1247166 transcript_region:SL2.40ch07:1245745..1247166+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00038654g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|53|105; (*GB) gi|401181|sp|P32026.1|DEF_TOBAC (e_value=1e-51) RecName: Full=Defensin-like protein; AltName: Full=Flower-specific gamma-thionin; Flags: Precursor;; (*SWP) sp|P32026|DEF_TOBAC (e_value=3e-53) Defensin-like protein OS=Nicotiana tabacum GN=FST PE=1 SV=1;; (*TAIR) AT1G61070.1 (e_value=5e-13) | Symbols: LCR66, PDF2.4 | low-molecular-weight cysteine-rich 66 | chr1:22492020-22492470 REVERSE LENGTH=76;; (*ITAG) Solyc07g006380.2.1 (e_value=7e-33) genomic_reference:SL2.40ch07 gene_region:1207489-1208297 transcript_region:SL2.40ch07:1207489..1208297+ go_terms:GO:0006952 functional_description:"Defensin-like protein (AHRD V1 ***- Q948T3_PYRPY); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0006952 NbS00038654g0008.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|53|105; (*GB) gi|401181|sp|P32026.1|DEF_TOBAC (e_value=1e-51) RecName: Full=Defensin-like protein; AltName: Full=Flower-specific gamma-thionin; Flags: Precursor;; (*SWP) sp|P32026|DEF_TOBAC (e_value=3e-53) Defensin-like protein OS=Nicotiana tabacum GN=FST PE=1 SV=1;; (*TAIR) AT1G61070.1 (e_value=5e-13) | Symbols: LCR66, PDF2.4 | low-molecular-weight cysteine-rich 66 | chr1:22492020-22492470 REVERSE LENGTH=76;; (*ITAG) Solyc07g006380.2.1 (e_value=7e-33) genomic_reference:SL2.40ch07 gene_region:1207489-1208297 transcript_region:SL2.40ch07:1207489..1208297+ go_terms:GO:0006952 functional_description:"Defensin-like protein (AHRD V1 ***- Q948T3_PYRPY); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0006952 NbS00014335g0001.1 protein AED:0.18 eAED:0.18 QI:16|1|1|1|0.85|0.62|8|241|593; (*GB) gi|224090013|ref|XP_002308906.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZA4|PMT7_ARATH (e_value=0.0) Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1;; (*TAIR) AT5G04060.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1099271-1101810 FORWARD LENGTH=600;; (*ITAG) Solyc10g079450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60309915-60318019 transcript_region:SL2.40ch10:60309915..60318019+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00017323g0009.1 protein AED:0.06 eAED:0.10 QI:0|0.5|0.66|1|0.5|0.66|3|0|258; (*GB) gi|255557012|ref|XP_002519539.1| (e_value=1e-158) Aquaporin PIP2.2, putative [Ricinus communis];; (*SWP) sp|Q9ATM6|PIP24_MAIZE (e_value=3e-147) Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=9e-148) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc09g007760.2.1 (e_value=9e-160) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00014679g0003.1 protein AED:0.10 eAED:0.10 QI:155|0|0|0.5|1|1|2|0|77; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=1e-17) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014679g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|64; (*ITAG) Solyc01g056950.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00029262g0002.1 protein AED:0.29 eAED:0.64 QI:46|0|0.33|0.66|0.5|0.66|3|0|76 NbS00018299g0005.1 protein AED:0.04 eAED:0.16 QI:37|0|0|1|0|0.25|4|0|331; (*GB) gi|225433874|ref|XP_002264936.1| (e_value=2e-132) PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=4e-132) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=3e-133) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=1e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00018299g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|128 NbS00032731g0010.1 protein AED:0.12 eAED:0.12 QI:232|0.71|0.75|1|0.85|1|8|684|329; (*GB) gi|350535987|ref|NP_001234224.1| (e_value=1e-97) dehydroascorbate reductase [Solanum lycopersicum];; (*SWP) sp|Q8LE52|DHAR3_ARATH (e_value=9e-81) Glutathione S-transferase DHAR3, chloroplastic OS=Arabidopsis thaliana GN=DHAR3 PE=1 SV=1;; (*TAIR) AT5G16710.1 (e_value=7e-82) | Symbols: DHAR3 | dehydroascorbate reductase 1 | chr5:5483312-5484926 FORWARD LENGTH=258;; (*ITAG) Solyc11g011250.1.1 (e_value=3e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4291341-4296684 transcript_region:SL2.40ch11:4291341..4296684- functional_description:"Chloride intracellular channel 6 (AHRD V1 ***- B6UCX2_MAIZE); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00032731g0006.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|4|0|226; (*GB) gi|357453365|ref|XP_003596959.1| (e_value=3e-109) L-ascorbate oxidase-like protein [Medicago truncatula];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=7e-60) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=2e-90) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052240.2.1 (e_value=5e-120) genomic_reference:SL2.40ch07 gene_region:58050410-58054055 transcript_region:SL2.40ch07:58050410..58054055- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00032731g0003.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|296082523|emb|CBI21528.3| (e_value=3e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G21860.1 (e_value=4e-18) | Symbols: | violaxanthin de-epoxidase-related | chr2:9318333-9319990 REVERSE LENGTH=522;; (*ITAG) Solyc04g051610.2.1 (e_value=5e-35) genomic_reference:SL2.40ch04 gene_region:50055286-50057216 transcript_region:SL2.40ch04:50055286..50057216- functional_description:"Violaxanthin de-epoxidase-related protein (AHRD V1 ***- A8J136_CHLRE)"; NbS00032731g0008.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|360; (*GB) gi|290575616|gb|ADD49735.1| (e_value=0.0) geranylgeranyl diphosphate synthase [Nicotiana tabacum];; (*SWP) sp|P34802|GGPP1_ARATH (e_value=2e-143) Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1 SV=2;; (*TAIR) AT4G36810.1 (e_value=1e-144) | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371;; (*ITAG) Solyc11g011240.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4289344-4290441 transcript_region:SL2.40ch11:4289344..4290441+ go_terms:GO:0008299 functional_description:"Geranylgeranyl pyrophosphate synthase 1 (AHRD V1 ***- Q1A7T0_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0008299 NbS00025971g0005.1 protein AED:0.31 eAED:0.34 QI:286|0.66|0.85|1|0.66|0.71|7|339|168; (*GB) gi|13774348|gb|AAK38843.1|AF346308_1 (e_value=7e-56) histidine-containing phosphotransfer protein [Catharanthus roseus];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=2e-49) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=2e-50) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g080540.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:72299197-72301457 transcript_region:SL2.40ch01:72299197..72301457+ go_terms:GO:0009927 functional_description:"Histidine-containing phosphotransfer protein (AHRD V1 **** Q94KS0_CATRO); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00015655g0003.1 protein AED:0.02 eAED:0.02 QI:217|1|0.5|1|0|0.5|2|0|104; (*ITAG) Solyc11g013210.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00015655g0017.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|4|0|217; (*GB) gi|113196591|gb|ABI31652.1| (e_value=3e-101) 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis];; (*SWP) sp|Q9SGW3|RP12A_ARATH (e_value=2e-94) 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1;; (*TAIR) AT1G64520.1 (e_value=1e-95) | Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267;; (*ITAG) Solyc08g082700.2.1 (e_value=4e-111) genomic_reference:SL2.40ch08 gene_region:62568517-62573377 transcript_region:SL2.40ch08:62568517..62573377+ go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 8 (AHRD V1 ***- B4FCY9_MAIZE); contains Interpro domain(s) IPR006746 26S proteasome non-ATPase regulatory subunit Rpn12 "; GO:0005515,GO:0004175 NbS00015655g0018.1 protein AED:0.39 eAED:0.79 QI:0|0|0|1|0|0.5|2|0|60 NbS00015655g0020.1 protein AED:0.28 eAED:0.31 QI:0|0.33|0.5|1|0|0|4|331|175; (*GB) gi|255555639|ref|XP_002518855.1| (e_value=5e-50) structural constituent of ribosome, putative [Ricinus communis];; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=1e-48) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1;; (*TAIR) AT1G64510.1 (e_value=1e-49) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954993-23956205 REVERSE LENGTH=207;; (*ITAG) Solyc08g082690.2.1 (e_value=2e-49) genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00040680g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|0.33|0.5|4|0|755; (*GB) gi|224139872|ref|XP_002323318.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41770.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF288) | chr2:17424549-17427042 REVERSE LENGTH=771;; (*ITAG) Solyc01g087600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74313470-74318705 transcript_region:SL2.40ch01:74313470..74318705+ functional_description:"Protein E03H4.4 partially confirmed by transcript evidence (AHRD V1 *-*- O17744_CAEEL)"; NbS00040680g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.6|0.33|1|0.8|0.5|6|0|1437; (*GB) gi|2318137|gb|AAB97152.1| (e_value=0.0) Mg protoporphyrin IX chelatase [Nicotiana tabacum];; (*SWP) sp|O50314|BCHH_CHLP8 (e_value=0.0) Magnesium-chelatase subunit H OS=Chlorobaculum parvum (strain NCIB 8327) GN=bchH PE=3 SV=2;; (*TAIR) AT5G13630.1 (e_value=0.0) | Symbols: GUN5, CCH, CHLH, CCH1, ABAR | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | chr5:4387567-4392082 REVERSE LENGTH=1381;; (*ITAG) Solyc04g015750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6034127-6040044 transcript_region:SL2.40ch04:6034127..6040044- go_terms:GO:0019899 functional_description:"Magnesium chelatase H subunit (AHRD V1 ***- D5KXY0_VITVI); contains Interpro domain(s) IPR011771 Magnesium-chelatase, subunit H "; GO:0019899 NbS00049420g0009.1 protein AED:0.39 eAED:0.39 QI:11|0.25|0|0.8|0.75|0.8|5|0|325; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=3e-59) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=3e-49) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=2e-50) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc01g108410.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049420g0007.1 protein AED:0.30 eAED:0.49 QI:0|0|0|1|0|0|2|0|103 NbS00003972g0006.1 protein AED:0.13 eAED:0.14 QI:261|1|0.5|1|1|1|2|0|342; (*GB) gi|350539725|ref|NP_001234767.1| (e_value=0.0) putative GID1-like gibberellin receptor [Solanum lycopersicum];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00003972g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|442; (*GB) gi|359479846|ref|XP_002272042.2| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Vitis vinifera];; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=3e-28) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT1G03440.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:852681-853874 FORWARD LENGTH=397;; (*ITAG) Solyc06g084420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45830306-45831511 transcript_region:SL2.40ch06:45830306..45831511+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00003972g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|0.66|0|0|3|46|33 NbS00003972g0008.1 protein AED:0.30 eAED:0.49 QI:0|0|0|1|0|0|2|0|130; (*GB) gi|224117500|ref|XP_002331690.1| (e_value=9e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g051130.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48863197-48863388 transcript_region:SL2.40ch04:48863197..48863388- functional_description:"Unknown Protein (AHRD V1)"; NbS00014142g0003.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|1|1|2|0|132 NbS00014142g0006.1 protein AED:0.08 eAED:0.08 QI:158|0.76|0.77|1|0.88|0.94|18|264|655; (*GB) gi|225437404|ref|XP_002268302.1| (e_value=0.0) PREDICTED: poly [ADP-ribose] polymerase 2-A-like [Vitis vinifera];; (*SWP) sp|Q11207|PARP2_ARATH (e_value=0.0) Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1;; (*TAIR) AT4G02390.1 (e_value=0.0) | Symbols: APP, PARP1, ATPARP1, PP | poly(ADP-ribose) polymerase | chr4:1050104-1053960 FORWARD LENGTH=637;; (*ITAG) Solyc08g074740.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56042682-56051168 transcript_region:SL2.40ch08:56042682..56051168- go_terms:GO:0003950 functional_description:"Novel protein similar to vertebrate ADP-ribosyltransferase (NAD+ poly (ADP-ribose) polymerase) (ADPRT) (AHRD V1 **** Q5RHR0_DANRE); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00005258g0001.1 protein AED:0.59 eAED:0.59 QI:0|0|0.25|0.25|1|1|4|156|86; (*GB) gi|388490984|gb|AFK33558.1| (e_value=2e-32) unknown [Medicago truncatula];; (*SWP) sp|Q00332|RS15A_BRANA (e_value=5e-34) 40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3;; (*TAIR) AT5G59850.1 (e_value=4e-35) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc04g058060.1.1 (e_value=3e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54322327-54325742 transcript_region:SL2.40ch04:54322327..54325742+ go_terms:GO:0005515 functional_description:"30S ribosomal protein S8P (AHRD V1 *-*- RS8_KORCO); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00007999g0006.1 protein AED:0.31 eAED:0.31 QI:633|0.88|0.89|1|0.55|0.57|19|0|305; (*GB) gi|1009234|gb|AAA79033.1| (e_value=0.0) SUP2, partial [Nicotiana tabacum];; (*SWP) sp|Q9HGI8|ERF3_KLULA (e_value=5e-79) Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SUP35 PE=3 SV=1;; (*TAIR) AT1G18070.2 (e_value=5e-156) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr1:6214236-6218211 REVERSE LENGTH=532;; (*ITAG) Solyc06g069020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39212135-39224003 transcript_region:SL2.40ch06:39212135..39224003+ go_terms:GO:0005525,GO:0006415 functional_description:"Elongation factor 1 alpha (AHRD V1 ***- Q2F6A7_BOMMO); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0006415 NbS00054539g0007.1 protein AED:0.23 eAED:0.24 QI:0|1|0.8|1|0.75|0.4|5|0|249; (*GB) gi|225433053|ref|XP_002284752.1| (e_value=2e-155) PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LSW8|ETFB_ARATH (e_value=7e-146) Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1;; (*TAIR) AT5G43430.1 (e_value=5e-147) | Symbols: ETFBETA | electron transfer flavoprotein beta | chr5:17453656-17455111 FORWARD LENGTH=251;; (*ITAG) Solyc09g089880.2.1 (e_value=8e-175) genomic_reference:SL2.40ch09 gene_region:64846851-64850243 transcript_region:SL2.40ch09:64846851..64850243- go_terms:GO:0009055 functional_description:"Electron transfer flavoprotein beta-subunit (AHRD V1 **** B6TPR6_MAIZE); contains Interpro domain(s) IPR012255 Electron transfer flavoprotein, beta subunit "; GO:0009055 NbS00050213g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|356516847|ref|XP_003527104.1| (e_value=1e-43) PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like isoform 2 [Glycine max];; (*SWP) sp|O24011|VATL_SOLLC (e_value=4e-45) V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=2e-45) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00050213g0006.1 protein AED:0.05 eAED:0.05 QI:139|1|1|1|0.33|0|4|62|545; (*GB) gi|255552770|ref|XP_002517428.1| (e_value=6e-39) hypothetical protein RCOM_0853160 [Ricinus communis];; (*TAIR) AT1G19010.1 (e_value=2e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74860.1); Has 337 Blast hits to 320 proteins in 97 species: Archae - 0; Bacteria - 14; Metazoa - 153; Fungi - 26; Plants - 76; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). | chr1:6565616-6567354 FORWARD LENGTH=319;; (*ITAG) Solyc02g087450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44467746-44471198 transcript_region:SL2.40ch02:44467746..44471198- functional_description:"Unknown Protein (AHRD V1)"; NbS00050213g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|169; (*GB) gi|255552768|ref|XP_002517427.1| (e_value=8e-14) hypothetical protein RCOM_0853150 [Ricinus communis];; (*ITAG) Solyc02g087440.2.1 (e_value=3e-60) genomic_reference:SL2.40ch02 gene_region:44464373-44465395 transcript_region:SL2.40ch02:44464373..44465395- functional_description:"Unknown Protein (AHRD V1)"; NbS00026051g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|0.75|0.6|5|0|209; (*GB) gi|76573319|gb|ABA46764.1| (e_value=1e-121) unknown [Solanum tuberosum];; (*SWP) sp|P41129|RL132_BRANA (e_value=2e-109) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.3 (e_value=1e-108) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=3e-123) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00026051g0011.1 protein AED:0.31 eAED:0.33 QI:257|0.66|0.75|1|0.66|0.75|4|438|100; (*GB) gi|224071457|ref|XP_002303469.1| (e_value=2e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|O04066|ACBP_RICCO (e_value=4e-50) Acyl-CoA-binding protein OS=Ricinus communis PE=3 SV=1;; (*TAIR) AT1G31812.1 (e_value=4e-42) | Symbols: ACBP6, ACBP | acyl-CoA-binding protein 6 | chr1:11411132-11412099 REVERSE LENGTH=92;; (*ITAG) Solyc08g075690.2.1 (e_value=3e-51) genomic_reference:SL2.40ch08 gene_region:56986351-56988984 transcript_region:SL2.40ch08:56986351..56988984- go_terms:GO:0004860 functional_description:"Acyl-CoA-binding protein (AHRD V1 ***- Q8RVT5_PANGI); contains Interpro domain(s) IPR000582 Acyl-CoA-binding protein, ACBP "; GO:0004860 NbS00026051g0004.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|72 NbS00026051g0009.1 protein AED:0.23 eAED:0.23 QI:218|1|1|1|1|1|4|496|447; (*GB) gi|224139126|ref|XP_002326774.1| (e_value=8e-152) predicted protein [Populus trichocarpa];; (*TAIR) AT3G45900.1 (e_value=2e-126) | Symbols: | Ribonuclease P protein subunit P38-related | chr3:16874566-16875984 REVERSE LENGTH=389;; (*ITAG) Solyc08g075680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56981576-56985505 transcript_region:SL2.40ch08:56981576..56985505+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041320g0002.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|583; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=0.0) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q42602|C89A2_ARATH (e_value=9e-152) Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2;; (*TAIR) AT1G64940.1 (e_value=0.0) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc03g096990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52800830-52805612 transcript_region:SL2.40ch03:52800830..52805612+ go_terms:GO:0019825 functional_description:"Cytochrome P450 89A2 (AHRD V1 ***- C89A2_ARATH); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00041320g0012.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|1|1|2|0|330; (*GB) gi|358347102|ref|XP_003637601.1| (e_value=2e-120) DEAD-box ATP-dependent RNA helicase [Medicago truncatula];; (*SWP) sp|P93008|RH21_ARATH (e_value=2e-113) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1;; (*TAIR) AT2G33730.1 (e_value=1e-114) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14265679-14267880 REVERSE LENGTH=733;; (*ITAG) Solyc02g081290.2.1 (e_value=9e-130) genomic_reference:SL2.40ch02 gene_region:39890643-39893115 transcript_region:SL2.40ch02:39890643..39893115+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** B7S8F6_9HYME); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00041320g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|296; (*GB) gi|350539952|ref|NP_001234590.1| (e_value=2e-89) TCP transcription factor 18 [Solanum lycopersicum];; (*SWP) sp|Q9LSD5|TCP20_ARATH (e_value=6e-55) Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1;; (*TAIR) AT3G27010.1 (e_value=5e-56) | Symbols: AT-TCP20, PCF1, TCP20, ATTCP20 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 | chr3:9957810-9958754 REVERSE LENGTH=314;; (*ITAG) Solyc02g068200.1.1 (e_value=6e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32795698-32796516 transcript_region:SL2.40ch02:32795698..32796516+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00041320g0017.1 protein AED:0.16 eAED:0.24 QI:0|0|0|1|0|0|3|0|166 NbS00041320g0016.1 protein AED:0.28 eAED:0.47 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|350539952|ref|NP_001234590.1| (e_value=4e-27) TCP transcription factor 18 [Solanum lycopersicum];; (*ITAG) Solyc02g068200.1.1 (e_value=6e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32795698-32796516 transcript_region:SL2.40ch02:32795698..32796516+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00041320g0015.1 protein AED:0.37 eAED:0.47 QI:0|0|0|1|0|0|2|0|78; (*GB) gi|350539952|ref|NP_001234590.1| (e_value=9e-19) TCP transcription factor 18 [Solanum lycopersicum];; (*SWP) sp|O64647|TCP9_ARATH (e_value=1e-16) Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1;; (*TAIR) AT2G45680.1 (e_value=1e-17) | Symbols: | TCP family transcription factor | chr2:18820717-18821787 REVERSE LENGTH=356;; (*ITAG) Solyc02g068200.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32795698-32796516 transcript_region:SL2.40ch02:32795698..32796516+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00001229g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|1|1|2|0|675; (*GB) gi|224134082|ref|XP_002327751.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66200.1 (e_value=0.0) | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453648-26455603 REVERSE LENGTH=651;; (*ITAG) Solyc03g033510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9327054-9329516 transcript_region:SL2.40ch03:9327054..9329516- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00025555g0007.1 protein AED:0.10 eAED:0.04 QI:324|1|0.8|1|0.75|0.6|5|865|200; (*GB) gi|4160298|emb|CAA09852.1| (e_value=2e-109) cyclin D2.1 protein [Nicotiana tabacum];; (*SWP) sp|Q6YXH8|CCD41_ORYSJ (e_value=7e-43) Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2;; (*TAIR) AT5G65420.1 (e_value=5e-44) | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141592-26143750 REVERSE LENGTH=308;; (*ITAG) Solyc05g051410.2.1 (e_value=9e-84) genomic_reference:SL2.40ch05 gene_region:60859090-60861492 transcript_region:SL2.40ch05:60859090..60861492+ go_terms:GO:0005515 functional_description:"Cyclin D2 (AHRD V1 ***- Q8L6U0_DAUCA); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515 NbS00025555g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|255579712|ref|XP_002530695.1| (e_value=4e-160) mitochondrial dicarboxylate carrier protein, putative [Ricinus communis];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=2e-64) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT2G22500.1 (e_value=5e-144) | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein 5 | chr2:9563531-9564472 REVERSE LENGTH=313;; (*ITAG) Solyc05g051400.2.1 (e_value=2e-167) genomic_reference:SL2.40ch05 gene_region:60846143-60847396 transcript_region:SL2.40ch05:60846143..60847396+ go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** B6TRY7_MAIZE); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00025555g0008.1 protein AED:0.45 eAED:0.45 QI:223|0.5|0.66|0.66|0|0|3|0|20 NbS00001858g0012.1 protein AED:0.16 eAED:0.16 QI:0|0.9|0.93|0.96|0.93|0.90|31|739|1370; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=0.0) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0.0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=0.0) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00001858g0013.1 protein AED:0.32 eAED:0.34 QI:0|0.33|0.5|1|0.33|0.5|4|203|309; (*GB) gi|118487049|gb|ABK95355.1| (e_value=2e-81) unknown [Populus trichocarpa];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=3e-11) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT2G38740.1 (e_value=4e-75) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:16194639-16195995 REVERSE LENGTH=244;; (*ITAG) Solyc08g007100.2.1 (e_value=7e-149) genomic_reference:SL2.40ch08 gene_region:1664009-1669010 transcript_region:SL2.40ch08:1664009..1669010+ go_terms:GO:0016787,GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 (AHRD V1 *--- B2IYD2_NOSP7); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787,GO:0008152 NbS00013352g0008.1 protein AED:0.08 eAED:0.19 QI:0|0|0|1|0|0|4|0|770; (*ITAG) Solyc01g005880.1.1 (e_value=4e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:585801-586844 transcript_region:SL2.40ch01:585801..586844+ functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC)"; NbS00038665g0001.1 protein AED:0.04 eAED:0.04 QI:193|1|1|1|0.75|0.6|5|150|409; (*GB) gi|270118384|emb|CBG76064.1| (e_value=4e-119) Myb 12 transcription factor [Solanum chmielewskii];; (*SWP) sp|O22264|MYB12_ARATH (e_value=5e-71) Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=1e-73) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc01g079620.2.1 (e_value=8e-106) genomic_reference:SL2.40ch01 gene_region:71255600-71258882 transcript_region:SL2.40ch01:71255600..71258882+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb 12 transcription factor (AHRD V1 **-- D2EBC3_9SOLN); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00033479g0010.1 protein AED:0.01 eAED:0.01 QI:29|1|1|1|0|1|2|5|146 NbS00033479g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|2|173|208; (*GB) gi|18076651|emb|CAC84134.1| (e_value=4e-13) precursor of thiamin-binding protein [Sesamum indicum];; (*ITAG) Solyc08g080480.2.1 (e_value=2e-36) genomic_reference:SL2.40ch08 gene_region:60935501-60937737 transcript_region:SL2.40ch08:60935501..60937737+ go_terms:GO:0045735 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0045735 NbS00033479g0013.1 protein AED:0.07 eAED:0.07 QI:203|1|1|1|1|1|4|70|506; (*GB) gi|121489791|emb|CAK18867.1| (e_value=5e-155) putative calmodulin binding protein precursor [Phillyrea latifolia];; (*TAIR) AT4G23060.1 (e_value=4e-53) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g080470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60928845-60932810 transcript_region:SL2.40ch08:60928845..60932810+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6STZ4_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00033479g0016.1 protein AED:0.26 eAED:0.27 QI:0|0.75|0.6|1|0.25|0.4|5|216|300; (*GB) gi|255537321|ref|XP_002509727.1| (e_value=3e-147) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6GMF8|RHDF1_DANRE (e_value=1e-12) Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1;; (*TAIR) AT1G63120.1 (e_value=2e-117) | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23409054-23410725 REVERSE LENGTH=317;; (*ITAG) Solyc08g080500.2.1 (e_value=6e-154) genomic_reference:SL2.40ch08 gene_region:60943133-60947585 transcript_region:SL2.40ch08:60943133..60947585- go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 ***- D7M0H4_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00006869g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-14) hypothetical protein [Nicotiana tabacum]; NbS00006869g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|73; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-15) hypothetical protein [Nicotiana tabacum]; NbS00006869g0102.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|166 NbS00019584g0013.1 protein AED:0.31 eAED:0.31 QI:292|0.88|0.9|1|0.66|0.7|10|256|352; (*GB) gi|296090715|emb|CBI41116.3| (e_value=2e-104) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66050.1 (e_value=4e-87) | Symbols: | Wound-responsive family protein | chr5:26412333-26414428 REVERSE LENGTH=340;; (*ITAG) Solyc02g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41342099-41345742 transcript_region:SL2.40ch02:41342099..41345742- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00019584g0012.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.4|1|0.5|0.6|5|328|219; (*GB) gi|1781299|emb|CAA70700.1| (e_value=7e-43) transformer-SR ribonucleoprotein [Nicotiana tabacum];; (*TAIR) AT4G35785.3 (e_value=7e-36) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953708-16955127 REVERSE LENGTH=207;; (*ITAG) Solyc02g061840.2.1 (e_value=1e-44) genomic_reference:SL2.40ch02 gene_region:27933230-27938206 transcript_region:SL2.40ch02:27933230..27938206- go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00036826g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|0|0.66|3|0|178; (*GB) gi|356508837|ref|XP_003523160.1| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100790055 [Glycine max];; (*TAIR) AT4G24972.1 (e_value=2e-50) | Symbols: TPD1 | tapetum determinant 1 | chr4:12838220-12839619 FORWARD LENGTH=176;; (*ITAG) Solyc03g097530.2.1 (e_value=2e-109) genomic_reference:SL2.40ch03 gene_region:53316846-53318908 transcript_region:SL2.40ch03:53316846..53318908- functional_description:"TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)"; NbS00014972g0010.1 protein AED:0.16 eAED:0.19 QI:627|0.75|0.2|1|1|1|5|0|292; (*GB) gi|297823651|ref|XP_002879708.1| (e_value=4e-121) oxidoreductase [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q0PGJ6|AKRC9_ARATH (e_value=1e-121) Aldo-keto reductase family 4 member C9 OS=Arabidopsis thaliana GN=AKR4C9 PE=1 SV=1;; (*TAIR) AT2G37770.2 (e_value=9e-123) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:15834888-15836659 FORWARD LENGTH=315;; (*ITAG) Solyc00g015750.1.1 (e_value=7e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11234322-11236093 transcript_region:SL2.40ch00:11234322..11236093+ go_terms:GO:0035035 functional_description:"Reductase 2 (AHRD V1 ***- Q6TY50_HYDMC); contains Interpro domain(s) IPR018170 Aldo/keto reductase, conserved site "; GO:0035035 NbS00020461g0003.1 protein AED:0.17 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|444; (*GB) gi|147866064|emb|CAN80963.1| (e_value=0.0) hypothetical protein VITISV_005607 [Vitis vinifera];; (*TAIR) AT3G09520.1 (e_value=7e-173) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:572674-574590 transcript_region:SL2.40ch09:572674..574590+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00020461g0001.1 protein AED:0.18 eAED:0.18 QI:261|1|1|1|0.83|0.85|7|429|435; (*GB) gi|225439840|ref|XP_002277802.1| (e_value=0.0) PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=3e-144) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G53520.1 (e_value=0.0) | Symbols: UXS1, ATUXS1 | UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=435;; (*ITAG) Solyc10g085920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64259534-64264315 transcript_region:SL2.40ch10:64259534..64264315- go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_KLEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00027736g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.87|0.77|0.88|1|1|9|0|379; (*GB) gi|225454603|ref|XP_002265122.1| (e_value=8e-144) PREDICTED: maltose excess protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q7XTQ5|MEX1_ORYSJ (e_value=4e-116) Maltose excess protein 1-like, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0602400 PE=2 SV=2;; (*TAIR) AT5G17520.1 (e_value=2e-114) | Symbols: RCP1, MEX1 | root cap 1 (RCP1) | chr5:5772796-5775231 REVERSE LENGTH=415;; (*ITAG) Solyc04g064720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54980220-54985175 transcript_region:SL2.40ch04:54980220..54985175- go_terms:GO:0005363 functional_description:"Maltose excess protein 1-like, chloroplastic (AHRD V1 **** MEX1_ORYSJ)"; GO:0005363 NbS00027736g0009.1 protein AED:0.93 eAED:0.95 QI:0|0|0|0.66|0.5|0.33|3|0|233; (*GB) gi|89953384|gb|ABD83288.1| (e_value=7e-15) Fgenesh protein 45 [Beta vulgaris];; (*ITAG) Solyc08g067150.2.1 (e_value=4e-75) genomic_reference:SL2.40ch08 gene_region:53283144-53291920 transcript_region:SL2.40ch08:53283144..53291920+ functional_description:"Tesmin/TSO1-like CXC domain containing protein expressed (AHRD V1 *--- Q10G99_ORYSJ); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbC26216047g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc06g073170.1.1 (e_value=1e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41474235-41474741 transcript_region:SL2.40ch06:41474235..41474741+ functional_description:"Unknown Protein (AHRD V1)"; NbC26216047g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|147792168|emb|CAN77499.1| (e_value=3e-85) hypothetical protein VITISV_002404 [Vitis vinifera];; (*SWP) sp|P13240|DR206_PEA (e_value=1e-11) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G07730.2 (e_value=9e-80) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:2397527-2398696 REVERSE LENGTH=389;; (*ITAG) Solyc06g075630.2.1 (e_value=9e-113) genomic_reference:SL2.40ch06 gene_region:43397564-43399083 transcript_region:SL2.40ch06:43397564..43399083- functional_description:"Dirigent-like protein (AHRD V1 ***- B6TVE6_MAIZE); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00013774g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|4|104|581; (*GB) gi|255559629|ref|XP_002520834.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q8VZR7|PTR30_ARATH (e_value=0.0) Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2;; (*TAIR) AT2G40460.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16897123-16901171 FORWARD LENGTH=583;; (*ITAG) Solyc06g050900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30259226-30264985 transcript_region:SL2.40ch06:30259226..30264985+ go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O22305_LOTJA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00043906g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|201; (*GB) gi|255641569|gb|ACU21058.1| (e_value=5e-31) unknown [Glycine max];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=4e-15) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=3e-16) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc03g114440.1.1 (e_value=4e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58497410-58497949 transcript_region:SL2.40ch03:58497410..58497949- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 3 (AHRD V1 *-*- B6SM68_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00043906g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|3|0|221; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-18) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=6e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00023047g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|8|287|308; (*GB) gi|225454434|ref|XP_002280220.1| (e_value=0.0) PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=7e-147) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT3G61610.1 (e_value=2e-177) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:22799480-22801029 FORWARD LENGTH=317;; (*ITAG) Solyc01g095470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78476591-78482443 transcript_region:SL2.40ch01:78476591..78482443+ go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein (AHRD V1 ***- D7LSC1_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0005975 NbS00023047g0002.1 protein AED:0.33 eAED:0.34 QI:186|0.81|0.75|0.91|1|1|12|0|247; (*GB) gi|255579328|ref|XP_002530509.1| (e_value=2e-150) Exosome complex exonuclease RRP41, putative [Ricinus communis];; (*SWP) sp|Q9NPD3|EXOS4_HUMAN (e_value=6e-77) Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3;; (*TAIR) AT3G61620.2 (e_value=1e-135) | Symbols: RRP41 | 3'-5'-exoribonuclease family protein | chr3:22801382-22802910 REVERSE LENGTH=241;; (*ITAG) Solyc01g095480.2.1 (e_value=1e-154) genomic_reference:SL2.40ch01 gene_region:78483413-78488420 transcript_region:SL2.40ch01:78483413..78488420- go_terms:GO:0006396 functional_description:"Ribonuclease PH (AHRD V1 ***- RNPH_STRGG); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 "; GO:0006396 NbS00059533g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|3|230|277; (*GB) gi|225431978|ref|XP_002278726.1| (e_value=5e-155) PREDICTED: 3-hydroxypropionyl-coenzyme A dehydratase [Vitis vinifera];; (*SWP) sp|P52046|CRT_CLOAB (e_value=1e-42) 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1;; (*TAIR) AT4G16210.1 (e_value=8e-143) | Symbols: ECHIA, E-COAH-2 | enoyl-CoA hydratase/isomerase A | chr4:9176864-9177978 REVERSE LENGTH=265;; (*ITAG) Solyc01g059830.2.1 (e_value=2e-171) genomic_reference:SL2.40ch01 gene_region:61474622-61478520 transcript_region:SL2.40ch01:61474622..61478520- go_terms:GO:0008152 functional_description:"Enoyl-CoA hydratase (AHRD V1 ***- C1K4P1_ELAOL); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00017615g0004.1 protein AED:0.30 eAED:0.40 QI:0|0.5|0|1|0|0|3|0|178 NbS00017615g0003.1 protein AED:0.22 eAED:0.32 QI:0|0|0|1|0|0|2|0|227; (*GB) gi|225455922|ref|XP_002276124.1| (e_value=4e-49) PREDICTED: lysM domain-containing GPI-anchored protein 1-like [Vitis vinifera];; (*SWP) sp|Q93ZH0|LYM1_ARATH (e_value=1e-38) LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1;; (*TAIR) AT1G21880.1 (e_value=7e-41) | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682048 FORWARD LENGTH=316;; (*ITAG) Solyc03g119550.1.1 (e_value=1e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62177632-62179385 transcript_region:SL2.40ch03:62177632..62179385- go_terms:GO:0016998 functional_description:"LysM-domain GPI-anchored protein (AHRD V1 ***- Q4VVD8_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00018730g0001.1 protein AED:0.35 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|170; (*GB) gi|297741623|emb|CBI32755.3| (e_value=4e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|P79769|TSN_CHICK (e_value=2e-19) Translin OS=Gallus gallus GN=TSN PE=1 SV=1;; (*TAIR) AT2G37020.2 (e_value=2e-41) | Symbols: | Translin family protein | chr2:15546511-15548792 FORWARD LENGTH=310;; (*ITAG) Solyc10g086210.1.1 (e_value=2e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64439630-64444454 transcript_region:SL2.40ch10:64439630..64444454- go_terms:GO:0003729 functional_description:"Translin-like protein (AHRD V1 ***- Q9SJK5_ARATH); contains Interpro domain(s) IPR002848 Translin "; GO:0003729 NbS00008748g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|223; (*GB) gi|351722424|ref|NP_001235196.1| (e_value=5e-42) uncharacterized protein LOC100306192 [Glycine max];; (*TAIR) AT1G06980.1 (e_value=5e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 159 Blast hits to 159 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2143248-2143757 REVERSE LENGTH=169;; (*ITAG) Solyc06g007370.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1406687-1407166 transcript_region:SL2.40ch06:1406687..1407166+ functional_description:"Os04g0630700 protein (Fragment) (AHRD V1 *-*- Q0J9U7_ORYSJ)"; NbS00039424g0014.1 protein AED:0.01 eAED:0.01 QI:239|1|1|1|0.8|0.66|6|429|606; (*GB) gi|297743084|emb|CBI35951.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=0.0) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G72970.1 (e_value=0.0) | Symbols: HTH, EDA17 | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27452872-27455706 FORWARD LENGTH=594;; (*ITAG) Solyc06g062600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35912143-35916844 transcript_region:SL2.40ch06:35912143..35916844+ go_terms:GO:0046593 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0046593 NbS00039424g0005.1 protein AED:0.27 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|582; (*GB) gi|359482518|ref|XP_002279880.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera];; (*SWP) sp|Q9LNP2|PPR47_ARATH (e_value=7e-172) Putative pentatricopeptide repeat-containing protein At1g17630 OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1;; (*TAIR) AT1G17630.1 (e_value=5e-173) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6064525-6066720 FORWARD LENGTH=731;; (*ITAG) Solyc06g062610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35917241-35919433 transcript_region:SL2.40ch06:35917241..35919433+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KFH7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039424g0016.1 protein AED:0.39 eAED:0.53 QI:0|0.07|0.07|0.78|0.15|0.28|14|177|343; (*GB) gi|356526017|ref|XP_003531616.1| (e_value=4e-75) PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max];; (*SWP) sp|Q0JLS6|RHD3_ORYSJ (e_value=9e-68) Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1;; (*TAIR) AT3G13870.2 (e_value=6e-67) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738;; (*ITAG) Solyc03g121590.2.1 (e_value=6e-85) genomic_reference:SL2.40ch03 gene_region:63727316-63737352 transcript_region:SL2.40ch03:63727316..63737352+ go_terms:GO:0031177 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0031177 NbS00039424g0020.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.66|1|1|3|0|172; (*GB) gi|356558692|ref|XP_003547637.1| (e_value=7e-27) PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630-like [Glycine max];; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=3e-16) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=2e-17) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc06g062610.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35917241-35919433 transcript_region:SL2.40ch06:35917241..35919433+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KFH7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039424g0017.1 protein AED:0.46 eAED:0.60 QI:47|0|0|1|1|1|2|0|44; (*GB) gi|356522460|ref|XP_003529864.1| (e_value=4e-19) PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max];; (*SWP) sp|Q9SSN0|RD3H1_ARATH (e_value=9e-20) Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana GN=At1g72960 PE=2 SV=2;; (*TAIR) AT1G72960.1 (e_value=7e-21) | Symbols: | Root hair defective 3 GTP-binding protein (RHD3) | chr1:27446263-27450862 FORWARD LENGTH=795;; (*ITAG) Solyc03g121590.2.1 (e_value=4e-22) genomic_reference:SL2.40ch03 gene_region:63727316-63737352 transcript_region:SL2.40ch03:63727316..63737352+ go_terms:GO:0031177 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0031177 NbS00039424g0013.1 protein AED:0.51 eAED:0.71 QI:0|0|0|1|0.33|0.5|4|0|222; (*GB) gi|147790717|emb|CAN63206.1| (e_value=1e-22) hypothetical protein VITISV_010618 [Vitis vinifera];; (*SWP) sp|P93042|RHD3_ARATH (e_value=2e-21) Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1;; (*TAIR) AT3G13870.2 (e_value=1e-22) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4570261 REVERSE LENGTH=738;; (*ITAG) Solyc12g044900.1.1 (e_value=7e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45698218-45706936 transcript_region:SL2.40ch12:45698218..45706936+ functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; NbC24882769g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|102; (*GB) gi|225448091|ref|XP_002276553.1| (e_value=2e-55) PREDICTED: 50S ribosomal protein L18-like [Vitis vinifera];; (*TAIR) AT1G14205.1 (e_value=7e-52) | Symbols: | Ribosomal L18p/L5e family protein | chr1:4855582-4856762 FORWARD LENGTH=165;; (*ITAG) Solyc05g007910.2.1 (e_value=9e-63) genomic_reference:SL2.40ch05 gene_region:2347177-2349393 transcript_region:SL2.40ch05:2347177..2349393+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6WB57_9FIRM); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00025787g0007.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|3|0|168; (*GB) gi|12963415|gb|AAK11255.1|AF329729_1 (e_value=2e-68) regulator of gene silencing [Nicotiana tabacum];; (*SWP) sp|Q8RYK0|CML31_ORYSJ (e_value=1e-32) Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1;; (*TAIR) AT5G42380.1 (e_value=2e-32) | Symbols: CML39, CML37 | calmodulin like 37 | chr5:16942758-16943315 REVERSE LENGTH=185;; (*ITAG) Solyc11g071740.1.1 (e_value=3e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52221262-52221867 transcript_region:SL2.40ch11:52221262..52221867- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00025787g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|322; (*GB) gi|224104943|ref|XP_002313627.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FG13|CXE15_ARATH (e_value=3e-111) Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1;; (*TAIR) AT5G06570.2 (e_value=3e-112) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329;; (*ITAG) Solyc11g071720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52207795-52209357 transcript_region:SL2.40ch11:52207795..52209357+ go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOSM); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00025787g0013.1 protein AED:0.07 eAED:0.13 QI:0|0|0|1|0|0.33|3|1320|83 NbS00025787g0011.1 protein AED:0.13 eAED:0.15 QI:0|0.85|0.77|1|0.95|0.90|22|0|1300; (*GB) gi|359479092|ref|XP_002273307.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266768 [Vitis vinifera];; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=3e-102) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G44050.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:15818738-15824792 FORWARD LENGTH=1263;; (*ITAG) Solyc11g071730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52210463-52220734 transcript_region:SL2.40ch11:52210463..52220734+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LXV6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00025787g0008.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|154; (*GB) gi|13925881|gb|AAK49454.1|AF304374_1 (e_value=5e-48) cellulose synthase catalytic subunit [Nicotiana alata];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=4e-47) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=3e-48) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc04g071650.2.1 (e_value=5e-53) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00026417g0003.1 protein AED:0.41 eAED:0.91 QI:0|0|0|1|1|1|2|0|126 NbS00005851g0011.1 protein AED:0.18 eAED:0.18 QI:3|0.89|0.85|1|0.78|0.9|20|310|678; (*GB) gi|224062133|ref|XP_002300771.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P04844|RPN2_HUMAN (e_value=3e-16) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3;; (*TAIR) AT4G21150.3 (e_value=0.0) | Symbols: HAP6 | ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691;; (*ITAG) Solyc07g014700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5107189-5117910 transcript_region:SL2.40ch07:5107189..5117910- go_terms:GO:0008250 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (AHRD V1 *--- RPN2_HUMAN); contains Interpro domain(s) IPR008814 Ribophorin II "; GO:0008250 NbS00017467g0004.1 protein AED:0.23 eAED:0.24 QI:9|0.87|0.77|1|1|1|9|0|421; (*GB) gi|255572850|ref|XP_002527357.1| (e_value=1e-157) lyase, putative [Ricinus communis];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=2e-15) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT2G22620.2 (e_value=2e-158) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=597;; (*ITAG) Solyc11g011300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4340301-4347968 transcript_region:SL2.40ch11:4340301..4347968+ go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00033745g0002.1 protein AED:0.07 eAED:0.07 QI:22|1|0.5|1|0|0.5|2|0|166; (*GB) gi|225432536|ref|XP_002277678.1| (e_value=4e-77) PREDICTED: transcription factor MUTE [Vitis vinifera];; (*SWP) sp|Q9M8K6|MUTE_ARATH (e_value=6e-66) Transcription factor MUTE OS=Arabidopsis thaliana GN=MUTE PE=2 SV=1;; (*TAIR) AT3G06120.1 (e_value=5e-67) | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:1846531-1848016 FORWARD LENGTH=202;; (*ITAG) Solyc01g080050.2.1 (e_value=2e-86) genomic_reference:SL2.40ch01 gene_region:71683227-71685011 transcript_region:SL2.40ch01:71683227..71685011+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MJZ9_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00036046g0002.1 protein AED:0.11 eAED:0.11 QI:185|1|1|1|0|0|2|473|100; (*GB) gi|351721079|ref|NP_001235150.1| (e_value=3e-37) uncharacterized protein LOC100499981 [Glycine max];; (*TAIR) AT2G44670.1 (e_value=8e-32) | Symbols: | Protein of unknown function (DUF581) | chr2:18425279-18425673 FORWARD LENGTH=93;; (*ITAG) Solyc01g088660.2.1 (e_value=8e-50) genomic_reference:SL2.40ch01 gene_region:75185596-75186764 transcript_region:SL2.40ch01:75185596..75186764+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00033064g0016.1 protein AED:0.31 eAED:0.31 QI:0|1|0.75|1|1|0.75|4|250|407; (*GB) gi|224069820|ref|XP_002326422.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=0.0) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT5G01020.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:6309-8270 REVERSE LENGTH=410;; (*ITAG) Solyc10g074710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57651885-57654898 transcript_region:SL2.40ch10:57651885..57654898+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033064g0015.1 protein AED:0.31 eAED:0.31 QI:341|1|0.87|1|0.71|0.87|8|0|398; (*GB) gi|225439047|ref|XP_002265169.1| (e_value=0.0) PREDICTED: ethanolamine-phosphate cytidylyltransferase isoform 1 [Vitis vinifera];; (*SWP) sp|Q55BZ4|PCY2_DICDI (e_value=5e-108) Ethanolamine-phosphate cytidylyltransferase OS=Dictyostelium discoideum GN=pctA PE=1 SV=1;; (*TAIR) AT2G38670.1 (e_value=0.0) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc10g074700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57632239-57644832 transcript_region:SL2.40ch10:57632239..57644832+ go_terms:GO:0009058 functional_description:"Bifunctional protein hldE (AHRD V1 *-*- HLDE_ERWCT); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0009058 NbS00033064g0004.1 protein AED:0.09 eAED:0.15 QI:0|0|0|1|1|1|2|0|331; (*GB) gi|225432528|ref|XP_002277614.1| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100244329 [Vitis vinifera];; (*TAIR) AT3G06150.1 (e_value=2e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861971-1863755 REVERSE LENGTH=594;; (*ITAG) Solyc01g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71794005-71796554 transcript_region:SL2.40ch01:71794005..71796554- functional_description:"Unknown Protein (AHRD V1)"; NbS00033064g0017.1 protein AED:0.35 eAED:0.35 QI:0|0.69|0.71|0.92|0.84|0.92|14|683|449; (*GB) gi|359480951|ref|XP_002264842.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243295 isoform 1 [Vitis vinifera];; (*TAIR) AT5G01010.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:1388-4924 REVERSE LENGTH=438;; (*ITAG) Solyc10g074690.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57604583-57618716 transcript_region:SL2.40ch10:57604583..57618716- go_terms:GO:0004867 functional_description:"MRNA complete cds clone RAFL23-01-J08 (AHRD V1 **-- Q67ZF4_ARATH); contains Interpro domain(s) IPR009038 GOLD "; GO:0004867 NbS00010858g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.8|1|0.5|0.4|5|129|319; (*GB) gi|356529761|ref|XP_003533456.1| (e_value=0.0) PREDICTED: isoflavone reductase homolog [Glycine max];; (*SWP) sp|P52581|IFRH_LUPAL (e_value=0.0) Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1;; (*TAIR) AT1G32100.1 (e_value=1e-163) | Symbols: ATPRR1, PRR1 | pinoresinol reductase 1 | chr1:11546472-11547953 REVERSE LENGTH=317;; (*ITAG) Solyc06g066170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37873239-37877673 transcript_region:SL2.40ch06:37873239..37877673+ go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** A3R052_LINPE); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00010858g0012.1 protein AED:0.35 eAED:0.36 QI:0|1|0.75|1|0|0.25|4|0|166; (*GB) gi|224071431|ref|XP_002303456.1| (e_value=3e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45590.1 (e_value=4e-39) | Symbols: | Ribosomal protein L35 | chr5:18484643-18486227 REVERSE LENGTH=173;; (*ITAG) Solyc06g066190.2.1 (e_value=7e-76) genomic_reference:SL2.40ch06 gene_region:37887616-37893878 transcript_region:SL2.40ch06:37887616..37893878+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L35 (Fragment) (AHRD V1 *--- D7SYN6_VITVI); contains Interpro domain(s) IPR001706 Ribosomal protein L35 "; GO:0005840 NbS00010858g0018.1 protein AED:0.09 eAED:0.13 QI:0|0.25|0|0.8|0.5|0.6|5|0|553; (*GB) gi|32470647|gb|AAP45173.1| (e_value=0.0) hypothetical protein SBB1_14t00005 [Solanum bulbocastanum];; (*ITAG) Solyc08g076040.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57270791-57273048 transcript_region:SL2.40ch08:57270791..57273048- functional_description:"cDNA clone J033107D23 full insert sequence (AHRD V1 *-*- B7ETL1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00010858g0017.1 protein AED:0.15 eAED:0.16 QI:0|0.33|0.14|1|0.33|0.42|7|0|227; (*GB) gi|109289907|gb|AAP45171.2| (e_value=4e-69) Calcium-dependent protein kinase substrate protein, putative [Solanum bulbocastanum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=4e-22) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G45580.1 (e_value=3e-42) | Symbols: | Homeodomain-like superfamily protein | chr5:18481092-18482598 REVERSE LENGTH=264;; (*ITAG) Solyc08g076010.2.1 (e_value=5e-89) genomic_reference:SL2.40ch08 gene_region:57233049-57236893 transcript_region:SL2.40ch08:57233049..57236893- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 *--* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00024440g0017.1 protein AED:0.04 eAED:0.08 QI:79|1|0.5|1|0|0|2|0|290; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=5e-97) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=4e-40) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00024440g0006.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|255580572|ref|XP_002531110.1| (e_value=5e-45) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LSW9|ATL16_ARATH (e_value=4e-20) RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1;; (*TAIR) AT5G43420.1 (e_value=3e-21) | Symbols: | RING/U-box superfamily protein | chr5:17451790-17452917 FORWARD LENGTH=375;; (*ITAG) Solyc11g073170.1.1 (e_value=9e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53312891-53313475 transcript_region:SL2.40ch11:53312891..53313475- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024440g0015.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.8|0.9|0.55|0.6|10|434|292; (*GB) gi|255580568|ref|XP_002531108.1| (e_value=3e-120) Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q6NMB6|UTR5B_ARATH (e_value=3e-117) UDP-galactose/UDP-glucose transporter 5B OS=Arabidopsis thaliana GN=At5g59740 PE=2 SV=1;; (*TAIR) AT5G59740.1 (e_value=2e-118) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr5:24070310-24072747 REVERSE LENGTH=344;; (*ITAG) Solyc11g073190.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53323776-53330988 transcript_region:SL2.40ch11:53323776..53330988- go_terms:GO:0055085 functional_description:"UDP-galactose transporter 5 (AHRD V1 ***- D7LMW4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0055085 NbS00024440g0020.1 protein AED:0.19 eAED:0.22 QI:0|0.8|0.5|1|1|1|6|0|545; (*GB) gi|225435086|ref|XP_002281446.1| (e_value=0.0) PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic [Vitis vinifera];; (*SWP) sp|P47924|RIBBA_ARATH (e_value=0.0) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G59750.2 (e_value=0.0) | Symbols: | DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=543;; (*ITAG) Solyc11g073160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53309247-53311991 transcript_region:SL2.40ch11:53309247..53311991+ go_terms:GO:0009231 functional_description:"GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 **-- Q6A4W9_MALDO); contains Interpro domain(s) IPR016299 Riboflavin biosynthesis protein RibA "; GO:0009231 NbS00011385g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|81; (*ITAG) Solyc08g048470.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011385g0004.1 protein AED:0.13 eAED:0.27 QI:48|0|0|1|0|0|2|0|80; (*GB) gi|290489654|gb|ADD31211.1| (e_value=2e-27) RNA polymerase alpha subunit protein [Antirrhinum majus];; (*SWP) sp|P06269|RPOA_TOBAC (e_value=6e-29) DNA-directed RNA polymerase subunit alpha OS=Nicotiana tabacum GN=rpoA PE=3 SV=1;; (*ITAG) ATCG00740.1 (e_value=4e-28) | Symbols: RPOA | RNA polymerase subunit alpha | chrC:77901-78890 REVERSE LENGTH=329;; (*ITAG) Solyc01g007560.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:1875492-1876368 transcript_region:SL2.40ch01:1875492..1876368- go_terms:GO:0006350,GO:0006351 functional_description:"DNA-directed RNA polymerase subunit alpha (AHRD V1 ***- D3WBC7_9BORA); contains Interpro domain(s) IPR011773 DNA-directed RNA polymerase, alpha subunit "; GO:0006350,GO:0006351 NbS00011385g0002.1 protein AED:0.32 eAED:0.41 QI:34|0|0|1|0|0|2|0|79; (*ITAG) Solyc08g044370.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00026199g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|83 NbS00034287g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|865; (*GB) gi|359477216|ref|XP_002272797.2| (e_value=0.0) PREDICTED: receptor-like protein kinase ANXUR1-like [Vitis vinifera];; (*SWP) sp|Q9SR05|ANX1_ARATH (e_value=0.0) Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1;; (*TAIR) AT3G04690.1 (e_value=0.0) | Symbols: ANX1 | Malectin/receptor-like protein kinase family protein | chr3:1273386-1275938 REVERSE LENGTH=850;; (*ITAG) Solyc07g008400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3197916-3200480 transcript_region:SL2.40ch07:3197916..3200480- go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00034287g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|356519926|ref|XP_003528619.1| (e_value=3e-75) PREDICTED: disease resistance response protein 206-like [Glycine max];; (*SWP) sp|P13240|DR206_PEA (e_value=4e-15) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G22900.1 (e_value=4e-34) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:8103910-8104491 REVERSE LENGTH=193;; (*ITAG) Solyc01g059900.2.1 (e_value=4e-96) genomic_reference:SL2.40ch01 gene_region:62040825-62041421 transcript_region:SL2.40ch01:62040825..62041421+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YR04_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00007690g0002.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|565; (*GB) gi|225453772|ref|XP_002270342.1| (e_value=0.0) PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q66H85|ANKZ1_RAT (e_value=5e-40) Ankyrin repeat and zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Ankzf1 PE=2 SV=1;; (*TAIR) AT1G01930.1 (e_value=2e-164) | Symbols: | zinc finger protein-related | chr1:320041-322809 REVERSE LENGTH=580;; (*ITAG) Solyc01g091510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00007690g0001.1 protein AED:0.64 eAED:0.64 QI:0|-1|0|1|-1|1|1|0|181; (*ITAG) Solyc01g091510.2.1 (e_value=5e-23) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00013193g0006.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|0.5|0.33|3|0|301; (*GB) gi|255764587|gb|ACU33853.1| (e_value=1e-102) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9SI78|PPR93_ARATH (e_value=2e-55) Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1;; (*TAIR) AT1G62720.1 (e_value=2e-56) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:23227574-23229031 FORWARD LENGTH=485;; (*ITAG) Solyc06g005220.2.1 (e_value=4e-118) genomic_reference:SL2.40ch06 gene_region:241201-243335 transcript_region:SL2.40ch06:241201..243335- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00013193g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|75; (*ITAG) Solyc06g005220.2.1 (e_value=5e-18) genomic_reference:SL2.40ch06 gene_region:241201-243335 transcript_region:SL2.40ch06:241201..243335- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00058587g0004.1 protein AED:0.25 eAED:0.25 QI:116|0.87|0.88|1|0.62|0.66|9|282|441; (*GB) gi|255548225|ref|XP_002515169.1| (e_value=9e-126) Protein CHMP7, putative [Ricinus communis];; (*TAIR) AT3G62080.2 (e_value=3e-114) | Symbols: | SNF7 family protein | chr3:22986191-22988517 FORWARD LENGTH=462;; (*ITAG) Solyc01g079070.2.1 (e_value=5e-116) genomic_reference:SL2.40ch01 gene_region:70655889-70657886 transcript_region:SL2.40ch01:70655889..70657886+ go_terms:GO:0015031 functional_description:"SNF7 family protein (AHRD V1 ***- D7LST2_ARALY); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00016730g0003.1 protein AED:0.18 eAED:0.19 QI:1154|0.78|0.86|1|0.78|0.8|15|246|402; (*GB) gi|359474639|ref|XP_002265359.2| (e_value=0.0) PREDICTED: cyclin-dependent kinase F-4-like [Vitis vinifera];; (*SWP) sp|Q6Z8C8|CDKF4_ORYSJ (e_value=1e-150) Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1;; (*TAIR) AT4G19110.1 (e_value=2e-168) | Symbols: | Protein kinase superfamily protein | chr4:10454770-10457468 REVERSE LENGTH=461;; (*ITAG) Solyc08g005470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:347999-354065 transcript_region:SL2.40ch08:347999..354065- go_terms:GO:0005524 functional_description:"Cell division protein kinase 7 (AHRD V1 ***- CDK7_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005524 NbS00016730g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.5|1|0.66|0.75|4|291|223; (*GB) gi|225427441|ref|XP_002267479.1| (e_value=4e-51) PREDICTED: protein BREVIS RADIX [Vitis vinifera];; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=1e-50) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=9e-52) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc08g005460.2.1 (e_value=7e-82) genomic_reference:SL2.40ch08 gene_region:340586-346968 transcript_region:SL2.40ch08:340586..346968+ go_terms:GO:0042802,GO:0015250 functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; GO:0042802,GO:0015250 NbS00018666g0009.1 protein AED:0.06 eAED:0.06 QI:140|1|1|1|0.8|0.66|6|107|599; (*GB) gi|255555301|ref|XP_002518687.1| (e_value=0.0) d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|O04130|SERA_ARATH (e_value=0.0) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=0.0) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc10g049890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:42590722-42594292 transcript_region:SL2.40ch10:42590722..42594292+ go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00018666g0006.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0|0.66|1|1|3|0|121; (*GB) gi|224105599|ref|XP_002313867.1| (e_value=3e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT1G44542.1 (e_value=2e-49) | Symbols: | Cyclase family protein | chr1:16865145-16866573 REVERSE LENGTH=271;; (*ITAG) Solyc10g049970.1.1 (e_value=3e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:42766896-42768518 transcript_region:SL2.40ch10:42766896..42768518+ go_terms:GO:0004061,GO:0009975 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061,GO:0009975 NbS00002684g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|639; (*GB) gi|359480813|ref|XP_002277337.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Vitis vinifera];; (*SWP) sp|Q9SN39|PP320_ARATH (e_value=2e-120) Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1;; (*TAIR) AT4G18750.1 (e_value=2e-121) | Symbols: DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871;; (*ITAG) Solyc02g065030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:30730243-30732159 transcript_region:SL2.40ch02:30730243..30732159+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9F5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00027203g0007.1 protein AED:0.15 eAED:0.15 QI:250|1|1|1|0.85|0.75|8|1887|141; (*GB) gi|2196548|gb|AAB61215.1| (e_value=3e-48) DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|P40619|HMGL_IPONI (e_value=1e-39) HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1;; (*TAIR) AT1G20696.2 (e_value=2e-40) | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147;; (*ITAG) Solyc02g082700.2.1 (e_value=3e-46) genomic_reference:SL2.40ch02 gene_region:40932829-40934370 transcript_region:SL2.40ch02:40932829..40934370- go_terms:GO:0003682,GO:0030527 functional_description:"High mobility group protein (AHRD V1 **-- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003682,GO:0030527 NbS00027203g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.86|0.81|1|1|1|16|214|609; (*GB) gi|296088652|emb|CBI37643.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G35560.1 (e_value=1e-144) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16881562-16886878 FORWARD LENGTH=1049;; (*ITAG) Solyc02g082690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40916781-40931957 transcript_region:SL2.40ch02:40916781..40931957+ functional_description:"Syntaxin binding protein 5 (Tomosyn) (AHRD V1 *--- Q14DD4_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00013790g0010.1 protein AED:0.00 eAED:0.00 QI:110|1|1|1|1|1|2|214|97; (*GB) gi|217323620|gb|ACK38177.1| (e_value=4e-32) hydrogen peroxide-induced 1 [Nicotiana tabacum];; (*TAIR) AT5G17165.1 (e_value=7e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5643143-5647702 REVERSE LENGTH=116;; (*ITAG) Solyc03g096840.2.1 (e_value=2e-35) genomic_reference:SL2.40ch03 gene_region:52656957-52659784 transcript_region:SL2.40ch03:52656957..52659784- functional_description:"Seed specific protein Bn15D1B (AHRD V1 ***- B6TIB8_MAIZE)"; NbS00013790g0008.1 protein AED:0.03 eAED:0.03 QI:245|0.66|0.5|1|1|1|4|0|439; (*GB) gi|283837097|emb|CBH19893.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=6e-112) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33270.1 (e_value=0.0) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc06g072830.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41305534-41308264 transcript_region:SL2.40ch06:41305534..41308264+ go_terms:GO:0030674,GO:0008022 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0030674,GO:0008022 NbS00013790g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.2|0|1|0.6|0.33|6|0|812; (*GB) gi|225454838|ref|XP_002274927.1| (e_value=5e-179) PREDICTED: uncharacterized protein LOC100254467 [Vitis vinifera];; (*SWP) sp|P59278|Y1745_ARATH (e_value=2e-31) Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2;; (*TAIR) AT3G03140.1 (e_value=9e-54) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:724348-727093 FORWARD LENGTH=769;; (*ITAG) Solyc06g072820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41297656-41304483 transcript_region:SL2.40ch06:41297656..41304483+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbS00039481g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|0.9|1|0.66|0.8|10|395|543; (*GB) gi|257831429|gb|ACV71015.1| (e_value=0.0) UPA15 [Capsicum annuum];; (*SWP) sp|Q9FNI7|CSLA2_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 2 OS=Arabidopsis thaliana GN=CSLA2 PE=2 SV=1;; (*TAIR) AT5G22740.1 (e_value=0.0) | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534;; (*ITAG) Solyc11g066820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49711779-49719301 transcript_region:SL2.40ch11:49711779..49719301+ functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-- A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; NbS00009535g0001.1 protein AED:0.16 eAED:0.16 QI:60|0|0|0.5|1|1|2|0|114; (*GB) gi|224123106|ref|XP_002330340.1| (e_value=6e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21400.1 (e_value=2e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7534824-7536293 REVERSE LENGTH=188;; (*ITAG) Solyc01g067080.2.1 (e_value=8e-70) genomic_reference:SL2.40ch01 gene_region:67802390-67803984 transcript_region:SL2.40ch01:67802390..67803984- functional_description:"Genomic DNA chromosome 3 P1 clone MHC9 (AHRD V1 ***- Q9LIF6_ARATH)"; NbS00009535g0002.1 protein AED:0.33 eAED:0.34 QI:371|1|0.87|1|0.85|0.75|8|0|329; (*GB) gi|224107339|ref|XP_002314452.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q29RM1|TPC_BOVIN (e_value=3e-68) Mitochondrial thiamine pyrophosphate carrier OS=Bos taurus GN=SLC25A19 PE=2 SV=1;; (*TAIR) AT5G48970.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:19857028-19859374 REVERSE LENGTH=339;; (*ITAG) Solyc01g067070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67794977-67801339 transcript_region:SL2.40ch01:67794977..67801339+ go_terms:GO:0030233 functional_description:"Mitochondrial deoxynucleotide carrier (AHRD V1 **** B4FIJ0_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00021221g0007.1 protein AED:0.31 eAED:0.32 QI:161|0.75|0.6|1|0.5|0.4|5|0|305; (*GB) gi|2500519|sp|Q40466.1|IF413_TOBAC (e_value=7e-141) RecName: Full=Eukaryotic initiation factor 4A-13; Short=eIF-4A-13; AltName: Full=ATP-dependent RNA helicase eIF4A-13;; (*SWP) sp|Q40466|IF413_TOBAC (e_value=2e-142) Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=5e-126) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc08g062800.2.1 (e_value=2e-140) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00023153g0005.1 protein AED:0.08 eAED:0.08 QI:6|0.66|0.75|1|0.66|0.75|4|0|381; (*GB) gi|225464868|ref|XP_002272914.1| (e_value=4e-96) PREDICTED: NAC domain-containing protein 18 [Vitis vinifera];; (*SWP) sp|Q94F58|NAC89_ARATH (e_value=1e-75) NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1;; (*TAIR) AT2G27300.1 (e_value=7e-77) | Symbols: ANAC040, NTL8 | NTM1-like 8 | chr2:11680417-11681955 REVERSE LENGTH=335;; (*ITAG) Solyc06g074170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42254209-42257940 transcript_region:SL2.40ch06:42254209..42257940- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HQ28_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00013207g0003.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|359479553|ref|XP_002273863.2| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100243219 [Vitis vinifera];; (*TAIR) AT5G22390.1 (e_value=2e-11) | Symbols: | Protein of unknown function (DUF3049) | chr5:7418383-7418991 REVERSE LENGTH=202;; (*ITAG) Solyc06g074270.1.1 (e_value=8e-78) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:42304162-42304992 transcript_region:SL2.40ch06:42304162..42304992- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMR2_ARATH)"; NbS00013207g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0.33|0.33|1|1|3|262|171; (*GB) gi|359479516|ref|XP_002275749.2| (e_value=1e-79) PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|P27788|FER3_MAIZE (e_value=3e-65) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=4e-61) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=1e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00013207g0009.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|0.66|0.5|4|465|214; (*GB) gi|192910762|gb|ACF06489.1| (e_value=1e-127) ribosomal protein L10a [Elaeis guineensis];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=5e-129) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=4e-130) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc06g074300.2.1 (e_value=8e-138) genomic_reference:SL2.40ch06 gene_region:42312797-42316469 transcript_region:SL2.40ch06:42312797..42316469- go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00040023g0003.1 protein AED:0.33 eAED:0.33 QI:219|0.66|0.8|1|0.33|0.4|10|423|292; (*GB) gi|225464880|ref|XP_002273234.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100262096 [Vitis vinifera];; (*TAIR) AT5G22340.2 (e_value=2e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:7394509-7396609 FORWARD LENGTH=340;; (*ITAG) Solyc11g068680.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50402744-50406114 transcript_region:SL2.40ch11:50402744..50406114- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMR8_ARATH)"; NbS00020160g0010.1 protein AED:0.07 eAED:0.09 QI:0|1|0.33|1|0.5|1|3|0|462; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=0.0) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=1e-146) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=1e-147) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g047740.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56275239-56276936 transcript_region:SL2.40ch07:56275239..56276936+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00020160g0002.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|316; (*GB) gi|302788846|ref|XP_002976192.1| (e_value=1e-15) hypothetical protein SELMODRAFT_443104 [Selaginella moellendorffii];; (*TAIR) AT5G15020.2 (e_value=3e-11) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc07g049250.1.1 (e_value=1e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56846363-56847250 transcript_region:SL2.40ch07:56846363..56847250- go_terms:GO:0005634 functional_description:"Histone deacetylase complex SIN3 component (AHRD V1 *-*- A9TE35_PHYPA); contains Interpro domain(s) IPR003822 Paired amphipathic helix "; GO:0005634 NbS00020160g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.5|1|0.6|0.5|6|371|215; (*GB) gi|224129006|ref|XP_002320477.1| (e_value=5e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05060.1 (e_value=3e-89) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1451255-1452858 REVERSE LENGTH=253;; (*ITAG) Solyc07g049200.2.1 (e_value=5e-120) genomic_reference:SL2.40ch07 gene_region:56817784-56820429 transcript_region:SL2.40ch07:56817784..56820429+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045527g0003.1 protein AED:0.00 eAED:0.00 QI:215|1|1|1|0|0|5|188|99 NbS00045527g0001.1 protein AED:0.07 eAED:0.90 QI:0|-1|0|1|-1|1|1|0|707; (*GB) gi|255556314|ref|XP_002519191.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LSQ2|PP239_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1;; (*TAIR) AT3G16890.1 (e_value=0.0) | Symbols: PPR40 | pentatricopeptide (PPR) domain protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659;; (*ITAG) Solyc01g080720.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:72469460-72474630 transcript_region:SL2.40ch01:72469460..72474630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002756g0002.1 protein AED:0.15 eAED:0.15 QI:175|0.84|0.75|1|0.89|0.9|20|0|1278; (*GB) gi|359473576|ref|XP_002264955.2| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Vitis vinifera];; (*SWP) sp|Q92620|PRP16_HUMAN (e_value=0.0) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2;; (*TAIR) AT5G13010.1 (e_value=0.0) | Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255;; (*ITAG) Solyc10g076910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59200223-59211124 transcript_region:SL2.40ch10:59200223..59211124- go_terms:GO:0004004,GO:0042802 functional_description:"Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein (AHRD V1 **** Q9LXT8_ARATH); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004,GO:0042802 NbS00002756g0022.1 protein AED:0.16 eAED:0.33 QI:44|0|0|1|0.66|0.25|4|0|257; (*GB) gi|16933569|gb|AAL30109.1| (e_value=2e-15) unknown [Solanum phureja x Solanum stenotomum];; (*ITAG) Solyc10g047880.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00052609g0008.1 protein AED:0.05 eAED:0.05 QI:419|1|1|1|1|1|4|35|835; (*GB) gi|6691125|gb|AAF24497.1|AF213696_1 (e_value=0.0) FH protein NFH2 [Nicotiana tabacum];; (*SWP) sp|Q9SE97|FH1_ARATH (e_value=0.0) Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1;; (*TAIR) AT3G25500.1 (e_value=0.0) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc06g082910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44832531-44836385 transcript_region:SL2.40ch06:44832531..44836385+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00052609g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|1|1|3|0|622; (*GB) gi|359497728|ref|XP_003635622.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380-like [Vitis vinifera];; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT5G48380.1 (e_value=0.0) | Symbols: BIR1 | BAK1-interacting receptor-like kinase 1 | chr5:19604584-19606532 REVERSE LENGTH=620;; (*ITAG) Solyc06g082920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44836567-44839100 transcript_region:SL2.40ch06:44836567..44839100- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007304g0001.1 protein AED:0.15 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|66841323|dbj|BAD99219.1| (e_value=8e-16) polypeptide with a gag-like domain [Petunia x hybrida];; (*ITAG) Solyc04g025890.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:23026497-23026784 transcript_region:SL2.40ch04:23026497..23026784+ functional_description:"Retroelement pol polyprotein-like (AHRD V1 **-- Q9FJV3_ARATH)"; NbS00007304g0012.1 protein AED:0.13 eAED:0.13 QI:478|0.75|0.6|1|1|1|5|357|107; (*GB) gi|224125482|ref|XP_002329816.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20740.3 (e_value=2e-20) | Symbols: | Tetraspanin family protein | chr2:8936713-8937292 FORWARD LENGTH=131;; (*ITAG) Solyc02g078450.2.1 (e_value=5e-32) genomic_reference:SL2.40ch02 gene_region:37698010-37699695 transcript_region:SL2.40ch02:37698010..37699695+ go_terms:GO:0016021 functional_description:"Tetraspanin family protein (AHRD V1 ***- B6TTZ1_MAIZE); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00007304g0003.1 protein AED:0.38 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|112 NbS00029104g0009.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|96; (*TAIR) AT1G49410.1 (e_value=8e-16) | Symbols: TOM6 | translocase of the outer mitochondrial membrane 6 | chr1:18286738-18286902 REVERSE LENGTH=54;; (*ITAG) Solyc01g109220.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:87992136-87992419 transcript_region:SL2.40ch01:87992136..87992419+ functional_description:"Mitochondrial import receptor subunit TOM6 homolog (AHRD V1 ***- TOM6_ARATH)"; NbS00029104g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0|2|189|488; (*GB) gi|225428586|ref|XP_002281132.1| (e_value=2e-161) PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera];; (*SWP) sp|Q9XIM8|PP155_ARATH (e_value=6e-133) Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1;; (*TAIR) AT2G15980.1 (e_value=4e-134) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6951349-6952845 REVERSE LENGTH=498;; (*ITAG) Solyc10g051010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46846396-46847877 transcript_region:SL2.40ch10:46846396..46847877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029104g0012.1 protein AED:0.13 eAED:0.13 QI:152|1|0.75|1|1|1|4|0|585; (*GB) gi|46367705|dbj|BAD15365.1| (e_value=0.0) nitrite reductase [Nicotiana tabacum];; (*SWP) sp|P38500|NIR_BETPN (e_value=0.0) Ferredoxin--nitrite reductase, chloroplastic OS=Betula pendula GN=NIR1 PE=2 SV=1;; (*TAIR) AT2G15620.1 (e_value=0.0) | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810552-6812666 FORWARD LENGTH=586;; (*ITAG) Solyc10g050890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46608443-46610651 transcript_region:SL2.40ch10:46608443..46610651- go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76G13_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region "; GO:0005515 NbS00029104g0015.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|4|0|435; (*GB) gi|129560507|dbj|BAF48804.1| (e_value=1e-101) wound-responsive AP2 like factor 2 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=3e-23) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=2e-24) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc10g050970.1.1 (e_value=4e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46749337-46750008 transcript_region:SL2.40ch10:46749337..46750008+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00037091g0006.1 protein AED:0.28 eAED:0.29 QI:0|0.25|0.2|1|0.25|0|5|0|474; (*GB) gi|113205240|gb|ABI34310.1| (e_value=8e-52) hypothetical protein SDM1_28t00017 [Solanum demissum];; (*TAIR) AT5G04730.1 (e_value=1e-30) | Symbols: | Ankyrin-repeat containing protein | chr5:1364101-1367303 REVERSE LENGTH=603;; (*ITAG) Solyc09g098050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67235158-67238245 transcript_region:SL2.40ch09:67235158..67238245+ functional_description:"Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Y5262_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00037091g0004.1 protein AED:0.52 eAED:0.64 QI:0|0|0|0.75|1|1|4|0|137; (*GB) gi|47900747|gb|AAT39319.1| (e_value=1e-17) Putative ankyrin repeat containing protein, identical [Solanum demissum];; (*ITAG) Solyc09g098060.2.1 (e_value=1e-41) genomic_reference:SL2.40ch09 gene_region:67244104-67247145 transcript_region:SL2.40ch09:67244104..67247145+ functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 *--- A8NAH8_COPC7); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00027825g0001.1 protein AED:0.91 eAED:0.91 QI:0|-1|0|1|-1|1|1|0|122 NbS00036962g0005.1 protein AED:0.31 eAED:0.35 QI:0|0|0|0.55|0.37|0.33|9|0|519; (*GB) gi|359472762|ref|XP_002276140.2| (e_value=3e-59) PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Vitis vinifera];; (*SWP) sp|Q5UBY2|FRS1_ARATH (e_value=4e-36) Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1;; (*TAIR) AT4G19990.1 (e_value=3e-37) | Symbols: FRS1 | FAR1-related sequence 1 | chr4:10832848-10835389 FORWARD LENGTH=687;; (*ITAG) Solyc02g068550.1.1 (e_value=7e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33077956-33081226 transcript_region:SL2.40ch02:33077956..33081226- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 ***- FRS4_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbC25132074g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|0|1|0|63; (*GB) gi|110083945|gb|ABG49145.1| (e_value=3e-26) proteinase inhibitor isoform [Solanum phureja];; (*ITAG) Solyc09g089540.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:64585944-64587634 transcript_region:SL2.40ch09:64585944..64587634+ go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q3S492_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00030327g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.62|0.66|1|0.62|0.77|9|205|549; (*GB) gi|302142489|emb|CBI19692.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXN5|TYW1_ARATH (e_value=0.0) tRNA wybutosine-synthesizing protein 1 homolog OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1;; (*TAIR) AT1G75200.1 (e_value=0.0) | Symbols: | flavodoxin family protein / radical SAM domain-containing protein | chr1:28220849-28223597 REVERSE LENGTH=647;; (*ITAG) Solyc04g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62148519-62153295 transcript_region:SL2.40ch04:62148519..62153295- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"Wyosine base formation domain protein (AHRD V1 *--- D3TCK2_ACIB4); contains Interpro domain(s) IPR013917 Wyosine base formation "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbS00034592g0005.1 protein AED:0.25 eAED:0.26 QI:9|0.41|0.46|0.92|0.58|0.61|13|341|448; (*GB) gi|359495929|ref|XP_002272151.2| (e_value=1e-139) PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera];; (*TAIR) AT2G43465.1 (e_value=2e-100) | Symbols: | RNA-binding ASCH domain protein | chr2:18047732-18049709 REVERSE LENGTH=388;; (*ITAG) Solyc06g073130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00015948g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|1|1|6|0|659; (*GB) gi|359490397|ref|XP_002279420.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera];; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc01g009600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3833422-3837877 transcript_region:SL2.40ch01:3833422..3837877- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00015948g0005.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|17367234|sp|Q9XH44.1|CET1_TOBAC (e_value=8e-31) RecName: Full=CEN-like protein 1;; (*SWP) sp|Q9XH44|CET1_TOBAC (e_value=2e-32) CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1;; (*ITAG) Solyc01g009560.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3813639-3814545 transcript_region:SL2.40ch01:3813639..3814545- go_terms:GO:0008429 functional_description:"Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT07_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; GO:0008429 NbS00000955g0011.1 protein AED:0.15 eAED:0.15 QI:355|1|1|1|0.66|0.7|10|534|285; (*GB) gi|359484559|ref|XP_003633121.1| (e_value=0.0) PREDICTED: probable lactoylglutathione lyase, chloroplast-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8W593|LGUC_ARATH (e_value=0.0) Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=2 SV=1;; (*TAIR) AT1G67280.1 (e_value=0.0) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350;; (*ITAG) Solyc12g007310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1701339-1705392 transcript_region:SL2.40ch12:1701339..1705392- go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase (AHRD V1 **** B6SSK1_MAIZE); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0004462 NbS00000955g0002.1 protein AED:0.35 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|224128252|ref|XP_002329118.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g007300.1.1 (e_value=2e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1699431-1700138 transcript_region:SL2.40ch12:1699431..1700138+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g20600 (AHRD V1 *-*- Y1060_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00000955g0013.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|173; (*GB) gi|224128252|ref|XP_002329118.1| (e_value=7e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g007300.1.1 (e_value=6e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1699431-1700138 transcript_region:SL2.40ch12:1699431..1700138+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g20600 (AHRD V1 *-*- Y1060_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00038694g0004.1 protein AED:0.77 eAED:0.77 QI:27|0.33|0.25|0.5|0.66|1|4|0|200; (*ITAG) Solyc03g118070.2.1 (e_value=9e-17) genomic_reference:SL2.40ch03 gene_region:61101249-61108353 transcript_region:SL2.40ch03:61101249..61108353+ go_terms:GO:0005515,GO:0030295 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0005515,GO:0030295 NbS00053066g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.25|1|1|4|0|225; (*GB) gi|255575349|ref|XP_002528577.1| (e_value=4e-132) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=5e-119) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=4e-120) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=5e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00027597g0007.1 protein AED:0.70 eAED:0.87 QI:0|0|0|0.25|0.57|0.5|8|0|234 NbS00002181g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|26397273|sp|O82067.3|TOM7A_SOLTU (e_value=5e-24) RecName: Full=Mitochondrial import receptor subunit TOM7-1; AltName: Full=Translocase of outer membrane 7 kDa subunit 1;; (*SWP) sp|O82067|TOM7A_SOLTU (e_value=2e-25) Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3;; (*TAIR) AT5G41685.1 (e_value=8e-20) | Symbols: | Mitochondrial outer membrane translocase complex, subunit Tom7 | chr5:16669419-16669646 REVERSE LENGTH=75;; (*ITAG) Solyc07g015970.1.1 (e_value=6e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:6053600-6053818 transcript_region:SL2.40ch07:6053600..6053818+ go_terms:GO:0005741 functional_description:"Mitochondrial import receptor subunit TOM7-1 (AHRD V1 ***- B6SJR3_MAIZE); contains Interpro domain(s) IPR012621 Mitochondrial outer membrane translocase complex, subunitt Tom7 "; GO:0005741 NbS00002181g0011.1 protein AED:0.15 eAED:0.15 QI:2019|0.75|0.8|1|0.75|0.6|5|333|289; (*GB) gi|225468218|ref|XP_002263085.1| (e_value=7e-75) PREDICTED: methyl-CpG-binding domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q8LA53|MBD2_ARATH (e_value=4e-61) Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1;; (*TAIR) AT5G35330.3 (e_value=3e-62) | Symbols: MBD02 | methyl-CPG-binding domain protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272;; (*ITAG) Solyc05g047450.1.1 (e_value=8e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58041156-58047725 transcript_region:SL2.40ch05:58041156..58047725+ go_terms:GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 ***- B9N851_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0051747 NbS00002181g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0|2|814|332; (*GB) gi|357473099|ref|XP_003606834.1| (e_value=3e-128) Arginine decarboxylase [Medicago truncatula];; (*SWP) sp|Q9K9K5|SPEA_BACHD (e_value=6e-51) Arginine decarboxylase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=speA PE=3 SV=1;; (*ITAG) Solyc07g015980.2.1 (e_value=2e-156) genomic_reference:SL2.40ch07 gene_region:6057700-6060363 transcript_region:SL2.40ch07:6057700..6060363- go_terms:GO:0008923 functional_description:"Lysine decarboxylase (AHRD V1 **** A0YN82_LYNSP); contains Interpro domain(s) IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 "; GO:0008923 NbS00002181g0004.1 protein AED:0.41 eAED:0.41 QI:77|1|0.5|1|0|0.5|2|0|195; (*GB) gi|356545390|ref|XP_003541126.1| (e_value=6e-83) PREDICTED: arginine decarboxylase-like [Glycine max];; (*SWP) sp|P21885|SPEA_BACSU (e_value=5e-32) Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA PE=1 SV=2;; (*ITAG) Solyc07g015980.2.1 (e_value=7e-112) genomic_reference:SL2.40ch07 gene_region:6057700-6060363 transcript_region:SL2.40ch07:6057700..6060363- go_terms:GO:0008923 functional_description:"Lysine decarboxylase (AHRD V1 **** A0YN82_LYNSP); contains Interpro domain(s) IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 "; GO:0008923 NbS00002181g0106.1 protein AED:0.05 eAED:0.06 QI:0|0|0.4|0.6|0|0.2|5|28|551 NbS00002181g0215.1 protein AED:0.13 eAED:0.18 QI:174|0.87|0.84|1|0.87|0.84|25|0|912 NbS00002181g0206.1 protein AED:0.15 eAED:0.15 QI:658|0.90|0.83|1|1|1|12|0|986 NbS00002181g0217.1 protein AED:0.48 eAED:0.48 QI:0|0.25|0.2|0.8|0.5|0.6|5|0|167 NbS00040266g0012.1 protein AED:0.26 eAED:0.26 QI:169|0.85|0.93|1|0.78|1|15|311|516; (*GB) gi|359483518|ref|XP_002272702.2| (e_value=0.0) PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera];; (*SWP) sp|Q5R644|API5_PONAB (e_value=3e-31) Apoptosis inhibitor 5 OS=Pongo abelii GN=API5 PE=2 SV=1;; (*TAIR) AT2G34040.1 (e_value=0.0) | Symbols: | Apoptosis inhibitory protein 5 (API5) | chr2:14377957-14382246 REVERSE LENGTH=553;; (*ITAG) Solyc10g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1553509-1565649 transcript_region:SL2.40ch10:1553509..1565649+ go_terms:GO:0017134 functional_description:"Apoptosis inhibitor (AHRD V1 ***- B0WCI8_CULQU); contains Interpro domain(s) IPR008383 Apoptosis inhibitory 5 "; GO:0017134 NbS00040266g0007.1 protein AED:0.36 eAED:0.43 QI:0|0|0.5|1|1|1|2|318|60 NbS00040266g0006.1 protein AED:0.30 eAED:0.31 QI:206|1|0.5|1|0|0.5|2|0|250; (*GB) gi|356508586|ref|XP_003523036.1| (e_value=1e-81) PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max];; (*SWP) sp|Q9FII2|FK117_ARATH (e_value=7e-63) F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1;; (*TAIR) AT5G42350.1 (e_value=5e-64) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:16932106-16933797 FORWARD LENGTH=563;; (*ITAG) Solyc04g082580.2.1 (e_value=1e-117) genomic_reference:SL2.40ch04 gene_region:63811989-63815217 transcript_region:SL2.40ch04:63811989..63815217- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTF5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00040266g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|148; (*GB) gi|297745573|emb|CBI40738.3| (e_value=4e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FII1|FK118_ARATH (e_value=1e-57) F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1;; (*TAIR) AT5G42360.1 (e_value=1e-58) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:16936305-16937996 REVERSE LENGTH=563;; (*ITAG) Solyc04g082580.2.1 (e_value=1e-80) genomic_reference:SL2.40ch04 gene_region:63811989-63815217 transcript_region:SL2.40ch04:63811989..63815217- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTF5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00040266g0016.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|225457590|ref|XP_002273276.1| (e_value=7e-57) PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera];; (*SWP) sp|Q9FII2|FK117_ARATH (e_value=2e-44) F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1;; (*TAIR) AT5G42350.1 (e_value=1e-45) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:16932106-16933797 FORWARD LENGTH=563;; (*ITAG) Solyc04g082580.2.1 (e_value=3e-91) genomic_reference:SL2.40ch04 gene_region:63811989-63815217 transcript_region:SL2.40ch04:63811989..63815217- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTF5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00055269g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.5|1|0|0.25|4|321|230; (*GB) gi|224116144|ref|XP_002317224.1| (e_value=8e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|O31581|YFHM_BACSU (e_value=7e-14) AB hydrolase superfamily protein yfhM OS=Bacillus subtilis (strain 168) GN=yfhM PE=3 SV=1;; (*TAIR) AT4G15960.1 (e_value=2e-23) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:9045763-9047199 REVERSE LENGTH=375;; (*ITAG) Solyc02g078570.2.1 (e_value=1e-36) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00055269g0007.1 protein AED:0.23 eAED:0.31 QI:0|0.25|0.2|1|0.25|0.4|5|0|176; (*GB) gi|388513173|gb|AFK44648.1| (e_value=5e-44) unknown [Medicago truncatula];; (*SWP) sp|P34913|HYES_HUMAN (e_value=7e-16) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT4G02340.1 (e_value=8e-19) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc02g078570.2.1 (e_value=7e-32) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00021716g0003.1 protein AED:0.08 eAED:0.10 QI:15|1|0.5|1|1|1|2|0|180; (*GB) gi|225434875|ref|XP_002283174.1| (e_value=7e-26) PREDICTED: uncharacterized protein LOC100248460 [Vitis vinifera];; (*TAIR) AT2G29180.1 (e_value=4e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 33 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:12543081-12543702 FORWARD LENGTH=169;; (*ITAG) Solyc05g009300.1.1 (e_value=5e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:3436757-3437239 transcript_region:SL2.40ch05:3436757..3437239+ functional_description:"80C09_19 related (AHRD V1 *-*- Q2HS36_MEDTR)"; NbS00034357g0006.1 protein AED:0.06 eAED:0.06 QI:148|0.83|0.85|1|1|1|7|0|1329; (*GB) gi|359492549|ref|XP_002283309.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259158 [Vitis vinifera];; (*TAIR) AT1G27750.1 (e_value=3e-157) | Symbols: | nucleic acid binding | chr1:9657425-9661750 FORWARD LENGTH=1075;; (*ITAG) Solyc04g077940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60395094-60411312 transcript_region:SL2.40ch04:60395094..60411312- go_terms:GO:0003676,GO:0000166 functional_description:"Flowering time control protein FPA (AHRD V1 *-*- FPA_ARATH); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal "; GO:0003676,GO:0000166 NbS00060344g0003.1 protein AED:0.06 eAED:0.10 QI:24|1|0.66|1|1|1|3|0|153; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=1e-106) PHB2 [Nicotiana benthamiana];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=3e-70) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=7e-101) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=1e-107) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00003998g0004.1 protein AED:0.01 eAED:0.01 QI:49|1|1|1|1|1|2|281|362; (*GB) gi|225446491|ref|XP_002278211.1| (e_value=0.0) PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera];; (*SWP) sp|Q6VMW0|Q8OMT_MENPI (e_value=6e-135) 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=1e-63) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc10g008120.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2265625-2267632 transcript_region:SL2.40ch10:2265625..2267632+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase 3 (AHRD V1 ***- B0ZB57_HUMLU); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00055393g0006.1 protein AED:0.26 eAED:0.26 QI:107|0.8|1|1|0.4|0.83|6|130|151; (*GB) gi|224095978|ref|XP_002310514.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|A0L5Z9|RL17_MAGSM (e_value=2e-38) 50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1;; (*TAIR) AT5G64650.1 (e_value=1e-81) | Symbols: | Ribosomal protein L17 family protein | chr5:25839542-25840775 REVERSE LENGTH=160;; (*ITAG) Solyc08g067950.2.1 (e_value=6e-88) genomic_reference:SL2.40ch08 gene_region:54214925-54222004 transcript_region:SL2.40ch08:54214925..54222004+ go_terms:GO:0003735,GO:0019904 functional_description:"50S ribosomal protein L17 (AHRD V1 ***- Q8LC38_ARATH); contains Interpro domain(s) IPR000456 Ribosomal protein L17 "; GO:0003735,GO:0019904 NbS00014108g0003.1 protein AED:0.22 eAED:0.25 QI:176|0.72|0.66|1|0.81|0.91|12|0|691; (*GB) gi|296088724|emb|CBI38174.3| (e_value=1e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22799|Y2349_ARATH (e_value=5e-131) Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2;; (*TAIR) AT2G33490.1 (e_value=4e-132) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623;; (*ITAG) Solyc01g009820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4260281-4266897 transcript_region:SL2.40ch01:4260281..4266897- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7LGA9_ARALY)"; NbS00012229g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|2500717|sp|Q41495.1|ST14_SOLTU (e_value=6e-87) RecName: Full=STS14 protein; Flags: Precursor;; (*SWP) sp|Q41495|ST14_SOLTU (e_value=2e-88) STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1;; (*TAIR) AT5G66590.1 (e_value=5e-64) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr5:26574255-26574812 FORWARD LENGTH=185;; (*ITAG) Solyc02g065470.1.1 (e_value=7e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31198798-31199340 transcript_region:SL2.40ch02:31198798..31199340+ go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 ***- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00012229g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|224094628|ref|XP_002310190.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23690.1 (e_value=5e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g065430.1.1 (e_value=5e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31167645-31168103 transcript_region:SL2.40ch02:31167645..31168103+ go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 **-- B6UG28_MAIZE)"; GO:0005515 NbS00012229g0006.1 protein AED:0.16 eAED:0.26 QI:36|0.14|0.25|0.87|0.28|0.62|8|0|370; (*GB) gi|147843034|emb|CAN83308.1| (e_value=2e-132) hypothetical protein VITISV_023019 [Vitis vinifera];; (*TAIR) AT5G66600.2 (e_value=1e-104) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26577954 REVERSE LENGTH=594;; (*ITAG) Solyc02g089980.2.1 (e_value=2e-148) genomic_reference:SL2.40ch02 gene_region:46247120-46250736 transcript_region:SL2.40ch02:46247120..46250736+ functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00040152g0006.1 protein AED:0.26 eAED:0.26 QI:244|1|1|1|0.66|0.57|7|344|368; (*GB) gi|225456094|ref|XP_002281306.1| (e_value=1e-172) PREDICTED: peroxisome biogenesis protein 3-2 [Vitis vinifera];; (*SWP) sp|Q8S9K7|PEX32_ARATH (e_value=2e-149) Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2 PE=2 SV=1;; (*TAIR) AT1G48635.1 (e_value=1e-150) | Symbols: PEX3, PEX3-2 | peroxin 3 | chr1:17983951-17985966 FORWARD LENGTH=364;; (*ITAG) Solyc03g119030.2.1 (e_value=2e-162) genomic_reference:SL2.40ch03 gene_region:61795368-61806928 transcript_region:SL2.40ch03:61795368..61806928- go_terms:GO:0005779 functional_description:"Peroxisomal biogenesis factor 3 (AHRD V1 ***- Q28F64_XENTR); contains Interpro domain(s) IPR006966 Peroxin-3 "; GO:0005779 NbS00032627g0002.1 protein AED:0.20 eAED:0.26 QI:0|0|0|1|0|0|3|0|136; (*GB) gi|388512221|gb|AFK44172.1| (e_value=5e-45) unknown [Medicago truncatula];; (*SWP) sp|P93447|EF1D_PIMBR (e_value=8e-45) Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3;; (*TAIR) AT1G30230.1 (e_value=7e-39) | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr1:10639286-10640515 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=5e-47) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00015936g0003.1 protein AED:0.75 eAED:0.75 QI:59|0.33|0.25|0.5|1|1|4|0|81 NbS00036543g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|5|260|252; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=1e-159) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=3e-129) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=3e-130) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=3e-162) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00036543g0009.1 protein AED:0.20 eAED:0.20 QI:193|1|1|1|0.75|0.66|9|375|309; (*GB) gi|297733710|emb|CBI14957.3| (e_value=6e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66L33|MK16A_XENLA (e_value=2e-72) Protein MAK16 homolog A OS=Xenopus laevis GN=mak16-a PE=2 SV=1;; (*TAIR) AT1G23280.1 (e_value=2e-114) | Symbols: | MAK16 protein-related | chr1:8260865-8262650 REVERSE LENGTH=303;; (*ITAG) Solyc01g005810.2.1 (e_value=3e-152) genomic_reference:SL2.40ch01 gene_region:530323-534729 transcript_region:SL2.40ch01:530323..534729+ functional_description:"Mak16 protein (AHRD V1 *-*- Q2HUC0_MEDTR); contains Interpro domain(s) IPR006958 Mak16 protein "; NbS00036543g0010.1 protein AED:0.21 eAED:0.21 QI:778|0.92|0.78|1|0.69|0.71|14|0|961; (*GB) gi|132449787|gb|ABO33637.1| (e_value=0.0) auxin response factor, partial [Solanum lycopersicum];; (*SWP) sp|Q8RYC8|ARFS_ARATH (e_value=0.0) Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2;; (*TAIR) AT1G19220.1 (e_value=0.0) | Symbols: ARF19, IAA22, ARF11 | auxin response factor 19 | chr1:6628395-6632779 REVERSE LENGTH=1086;; (*ITAG) Solyc07g042260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52687405-52694764 transcript_region:SL2.40ch07:52687405..52694764- go_terms:GO:0046983 functional_description:"Auxin response factor 1 (AHRD V1 *-*- Q6L8U3_CUCSA); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046983 NbS00022580g0005.1 protein AED:0.16 eAED:0.60 QI:0|1|0|1|1|0.5|2|0|187; (*GB) gi|255552117|ref|XP_002517103.1| (e_value=7e-21) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8GW61|STP14_ARATH (e_value=4e-18) Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2;; (*TAIR) AT1G77210.2 (e_value=3e-19) | Symbols: STP14 | sugar transporter 14 | chr1:29009036-29010980 REVERSE LENGTH=504;; (*ITAG) Solyc05g018230.2.1 (e_value=4e-27) genomic_reference:SL2.40ch05 gene_region:20267103-20269235 transcript_region:SL2.40ch05:20267103..20269235+ go_terms:GO:0005358 functional_description:"High-affinity glucose transporter (AHRD V1 *-** HGT1_KLULA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005358 NbS00045680g0003.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|297830986|ref|XP_002883375.1| (e_value=4e-62) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LUJ3|RDM1_ARATH (e_value=6e-59) Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1;; (*TAIR) AT3G22680.1 (e_value=4e-60) | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1 | chr3:8019785-8020374 FORWARD LENGTH=163;; (*ITAG) Solyc10g045190.1.1 (e_value=1e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27598984-27599343 transcript_region:SL2.40ch10:27598984..27599343- go_terms:GO:0043621 functional_description:"Protein RDM1 (AHRD V1 ***- RDM1_ARATH); contains Interpro domain(s) IPR015270 Protein of unknown function DUF1950 "; GO:0043621 NbS00007193g0102.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|228 NbS00007193g0114.1 protein AED:0.06 eAED:0.06 QI:152|0|0.33|0.66|0.5|0.66|3|0|156 NbS00007193g0101.1 protein AED:0.15 eAED:0.15 QI:0|0|0.33|1|1|1|3|0|376 NbS00007193g0103.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|359 NbC25791808g0002.1 protein AED:0.48 eAED:0.48 QI:0|0|0.5|1|0|0|2|0|40; (*TAIR) AT4G14600.1 (e_value=2e-15) | Symbols: | Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137;; (*ITAG) Solyc04g074940.2.1 (e_value=4e-22) genomic_reference:SL2.40ch04 gene_region:58422233-58425274 transcript_region:SL2.40ch04:58422233..58425274- go_terms:GO:0005484 functional_description:"Bet1-like protein At4g14600 (AHRD V1 **-- BETL1_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00012841g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|296083749|emb|CBI23738.3| (e_value=2e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G05210.2 (e_value=4e-31) | Symbols: | Surfeit locus protein 6 | chr5:1548398-1549534 FORWARD LENGTH=378;; (*ITAG) Solyc02g082130.1.1 (e_value=7e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40430556-40431629 transcript_region:SL2.40ch02:40430556..40431629- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007019 Surfeit locus 6 "; NbS00012841g0005.1 protein AED:0.49 eAED:0.60 QI:0|0|0.5|1|0|0.5|2|430|131 NbS00012841g0012.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.6|1|0.75|0.6|5|973|354; (*GB) gi|224072406|ref|XP_002303720.1| (e_value=7e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=7e-34) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G44680.1 (e_value=2e-106) | Symbols: | DNA glycosylase superfamily protein | chr5:18024461-18025893 REVERSE LENGTH=353;; (*ITAG) Solyc02g082120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40419675-40422095 transcript_region:SL2.40ch02:40419675..40422095+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6TPB7_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00012841g0013.1 protein AED:0.03 eAED:0.08 QI:0|0|0|1|0|0|2|0|420; (*GB) gi|225424950|ref|XP_002263808.1| (e_value=2e-67) PREDICTED: uncharacterized protein LOC100242840 [Vitis vinifera];; (*TAIR) AT4G20190.1 (e_value=3e-47) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63; Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes - 128 (source: NCBI BLink). | chr4:10906508-10907677 REVERSE LENGTH=389;; (*ITAG) Solyc02g082150.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40443813-40444862 transcript_region:SL2.40ch02:40443813..40444862- functional_description:"Unknown Protein (AHRD V1)"; NbS00057396g0007.1 protein AED:0.20 eAED:0.20 QI:90|1|1|1|0.88|0.8|10|156|265; (*GB) gi|255541628|ref|XP_002511878.1| (e_value=5e-161) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45990.2 (e_value=4e-155) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 312 Blast hits to 312 proteins in 90 species: Archae - 0; Bacteria - 131; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr2:18919402-18921043 FORWARD LENGTH=268;; (*ITAG) Solyc10g012410.2.1 (e_value=1e-167) genomic_reference:SL2.40ch10 gene_region:5081971-5084911 transcript_region:SL2.40ch10:5081971..5084911- functional_description:"HAD superfamily hydrolase (AHRD V1 ***- B5IPP9_9CHRO)"; NbS00057396g0008.1 protein AED:0.01 eAED:0.01 QI:124|0.5|0.66|1|0.5|0.33|3|225|205; (*GB) gi|225454276|ref|XP_002275895.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100256823 [Vitis vinifera];; (*TAIR) AT2G46000.1 (e_value=5e-50) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208;; (*ITAG) Solyc10g012400.2.1 (e_value=3e-89) genomic_reference:SL2.40ch10 gene_region:5079720-5081923 transcript_region:SL2.40ch10:5079720..5081923+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018551g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.71|1|0.83|0.71|7|0|527; (*GB) gi|297735841|emb|CBI18561.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G37160.1 (e_value=0.0) | Symbols: sks15 | SKU5 similar 15 | chr4:17494820-17497124 REVERSE LENGTH=541;; (*ITAG) Solyc02g090360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46495903-46498924 transcript_region:SL2.40ch02:46495903..46498924- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00028069g0003.1 protein AED:0.30 eAED:0.36 QI:0|0.42|0.37|1|1|1|8|0|253; (*GB) gi|294862567|gb|ADF45668.1| (e_value=8e-136) nucleoside diphosphate kinase 1 [Solanum tuberosum];; (*SWP) sp|Q8RXA8|NDK4_SPIOL (e_value=9e-115) Nucleoside diphosphate kinase 4, chloroplastic OS=Spinacia oleracea GN=NDK4 PE=1 SV=1;; (*TAIR) AT4G23900.1 (e_value=4e-113) | Symbols: | Nucleoside diphosphate kinase family protein | chr4:12424505-12426318 FORWARD LENGTH=237;; (*ITAG) Solyc08g082430.2.1 (e_value=9e-139) genomic_reference:SL2.40ch08 gene_region:62404261-62407246 transcript_region:SL2.40ch08:62404261..62407246+ go_terms:GO:0008270 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- D5ILC3_SOLTU); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0008270 NbS00029544g0007.1 protein AED:0.30 eAED:0.30 QI:0|0.9|0.72|0.90|0.9|0.90|11|0|346; (*GB) gi|297743168|emb|CBI36035.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q92F42|RADA_LISIN (e_value=1e-90) DNA repair protein RadA homolog OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=radA PE=3 SV=1;; (*TAIR) AT5G50340.1 (e_value=0.0) | Symbols: | ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases | chr5:20491635-20495830 REVERSE LENGTH=587;; (*ITAG) Solyc03g121120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63385722-63395284 transcript_region:SL2.40ch03:63385722..63395284- go_terms:GO:0008233 functional_description:"DNA repair protein radA (AHRD V1 ***- D4YAY4_BACTR); contains Interpro domain(s) IPR004504 DNA repair protein RadA "; GO:0008233 NbS00029544g0002.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|1|1|4|0|453; (*GB) gi|255574235|ref|XP_002528032.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9C9I6|PP116_ARATH (e_value=1e-165) Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1;; (*TAIR) AT1G71490.1 (e_value=1e-166) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26933326-26935371 REVERSE LENGTH=681;; (*ITAG) Solyc09g082400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00014262g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.4|1|0.5|0.4|5|0|325; (*GB) gi|224129298|ref|XP_002320550.1| (e_value=5e-120) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07570.1 (e_value=2e-105) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:2418205-2420206 REVERSE LENGTH=369;; (*ITAG) Solyc06g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44799771-44803447 transcript_region:SL2.40ch06:44799771..44803447- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6T412_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00022290g0010.1 protein AED:0.00 eAED:0.00 QI:285|1|0.5|1|1|1|2|0|300; (*GB) gi|356523316|ref|XP_003530286.1| (e_value=1e-79) PREDICTED: trihelix transcription factor GT-3a-like [Glycine max];; (*SWP) sp|Q9SDW0|TGT3A_ARATH (e_value=1e-52) Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1;; (*TAIR) AT5G01380.1 (e_value=8e-54) | Symbols: | Homeodomain-like superfamily protein | chr5:155784-157451 REVERSE LENGTH=323;; (*ITAG) Solyc09g005560.2.1 (e_value=5e-69) genomic_reference:SL2.40ch09 gene_region:386228-387708 transcript_region:SL2.40ch09:386228..387708- functional_description:"Zinc finger and SCAN domain containing 29 (Predicted) (AHRD V1 *--- A9X1B1_PAPAN); contains Interpro domain(s) IPR017877 MYB-like "; NbS00022290g0009.1 protein AED:0.23 eAED:0.23 QI:0|1|0.85|1|1|1|7|0|530; (*GB) gi|225439418|ref|XP_002264564.1| (e_value=0.0) PREDICTED: calcium-dependent protein kinase 13 [Vitis vinifera];; (*SWP) sp|Q8W4I7|CDPKD_ARATH (e_value=0.0) Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2;; (*TAIR) AT3G51850.1 (e_value=0.0) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528;; (*ITAG) Solyc09g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:369215-377428 transcript_region:SL2.40ch09:369215..377428- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 13 (AHRD V1 **** B9IGA3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00005545g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|4|0|340; (*GB) gi|607190|emb|CAA54557.1| (e_value=1e-166) dioxygenase [Solanum melongena];; (*SWP) sp|P24397|HY6H_HYONI (e_value=6e-83) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT5G24530.1 (e_value=3e-60) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc07g043420.2.1 (e_value=2e-165) genomic_reference:SL2.40ch07 gene_region:54503345-54505070 transcript_region:SL2.40ch07:54503345..54505070+ go_terms:GO:0010302,GO:0045431 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **-* Q9ZSH4_SOLCH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0045431 NbS00005545g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.4|1|0.75|0.6|5|0|399; (*GB) gi|4376203|gb|AAB05376.3| (e_value=0.0) putative cytochrome P-450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=5e-112) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14630.1 (e_value=2e-122) | Symbols: CYP72A9 | cytochrome P450, family 72, subfamily A, polypeptide 9 | chr3:4917498-4919409 FORWARD LENGTH=508;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-142) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00056121g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0|1|0.66|0.5|4|0|613; (*GB) gi|225450325|ref|XP_002268328.1| (e_value=4e-97) PREDICTED: uncharacterized protein LOC100263099 [Vitis vinifera];; (*TAIR) AT2G44430.1 (e_value=3e-36) | Symbols: | DNA-binding bromodomain-containing protein | chr2:18333603-18336165 FORWARD LENGTH=646;; (*ITAG) Solyc01g073950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70543416-70547894 transcript_region:SL2.40ch01:70543416..70547894+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9N6H8_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbC26024791g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|147765322|emb|CAN64903.1| (e_value=3e-102) hypothetical protein VITISV_019802 [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=1e-58) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=7e-60) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc09g090780.1.1 (e_value=4e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65549203-65551101 transcript_region:SL2.40ch09:65549203..65551101- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbC26024791g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|225433310|ref|XP_002282466.1| (e_value=2e-62) PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vitis vinifera];; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=7e-34) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=5e-35) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc09g090780.1.1 (e_value=5e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65549203-65551101 transcript_region:SL2.40ch09:65549203..65551101- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00038834g0001.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|1|1|2|0|622; (*GB) gi|224115046|ref|XP_002316926.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK35|THE1_ARATH (e_value=0.0) Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1;; (*TAIR) AT5G54380.1 (e_value=0.0) | Symbols: THE1 | protein kinase family protein | chr5:22077313-22079880 REVERSE LENGTH=855;; (*ITAG) Solyc05g054680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63687958-63690486 transcript_region:SL2.40ch05:63687958..63690486- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00043486g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|132; (*ITAG) Solyc08g005370.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:279332-282745 transcript_region:SL2.40ch08:279332..282745+ functional_description:"F-box family protein (AHRD V1 *-*- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00043486g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0.5|1|0|0.5|2|372|533; (*GB) gi|357510067|ref|XP_003625322.1| (e_value=0.0) Pentatricopeptide repeat protein [Medicago truncatula];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=2e-140) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=2e-141) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc08g005390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:288225-290018 transcript_region:SL2.40ch08:288225..290018- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LE02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00010603g0002.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|1|1|4|0|297; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=3e-156) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=3e-133) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=2e-134) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=6e-173) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00010250g0019.1 protein AED:0.25 eAED:0.25 QI:343|0.8|0.81|1|0.8|0.81|16|0|657; (*GB) gi|225438432|ref|XP_002276608.1| (e_value=0.0) PREDICTED: MLO9 protein [Vitis vinifera];; (*SWP) sp|O22757|MLO8_ARATH (e_value=0.0) MLO-like protein 8 OS=Arabidopsis thaliana GN=MLO8 PE=2 SV=2;; (*TAIR) AT2G17480.1 (e_value=0.0) | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO family protein | chr2:7590559-7593768 REVERSE LENGTH=593;; (*ITAG) Solyc02g082430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40694608-40700995 transcript_region:SL2.40ch02:40694608..40700995- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010250g0013.1 protein AED:0.26 eAED:0.29 QI:579|0.57|0.5|1|1|0.87|8|204|329; (*GB) gi|224071355|ref|XP_002303419.1| (e_value=7e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CSH3|RRP44_MOUSE (e_value=5e-47) Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4;; (*TAIR) AT2G17510.1 (e_value=8e-118) | Symbols: EMB2763 | ribonuclease II family protein | chr2:7609395-7615881 REVERSE LENGTH=933;; (*ITAG) Solyc02g082460.2.1 (e_value=3e-134) genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00010250g0020.1 protein AED:0.24 eAED:0.30 QI:230|0.4|0.5|1|0.4|0.33|6|0|356; (*GB) gi|224084036|ref|XP_002307201.1| (e_value=3e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=1e-46) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=9e-48) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc02g082430.2.1 (e_value=8e-102) genomic_reference:SL2.40ch02 gene_region:40694608-40700995 transcript_region:SL2.40ch02:40694608..40700995- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010250g0017.1 protein AED:0.42 eAED:0.42 QI:8|1|0.33|1|1|1|3|0|75; (*GB) gi|297836470|ref|XP_002886117.1| (e_value=4e-20) ribonuclease II family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G17510.1 (e_value=1e-19) | Symbols: EMB2763 | ribonuclease II family protein | chr2:7609395-7615881 REVERSE LENGTH=933;; (*ITAG) Solyc02g082460.2.1 (e_value=4e-24) genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00010250g0021.1 protein AED:0.20 eAED:0.20 QI:357|0.88|0.9|1|0.44|0.6|10|114|359; (*GB) gi|255561457|ref|XP_002521739.1| (e_value=3e-129) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT2G17500.4 (e_value=9e-120) | Symbols: | Auxin efflux carrier family protein | chr2:7607063-7608990 FORWARD LENGTH=396;; (*ITAG) Solyc02g082450.2.1 (e_value=6e-163) genomic_reference:SL2.40ch02 gene_region:40726154-40728736 transcript_region:SL2.40ch02:40726154..40728736+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7L9F0_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00001916g0008.1 protein AED:0.08 eAED:0.08 QI:224|1|0.93|1|0.78|0.73|15|372|920; (*GB) gi|255583860|ref|XP_002532681.1| (e_value=0.0) Epsin-2, putative [Ricinus communis];; (*SWP) sp|Q67YI9|EPN2_ARATH (e_value=2e-163) Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1;; (*TAIR) AT2G43160.1 (e_value=1e-164) | Symbols: | ENTH/VHS family protein | chr2:17948884-17953267 FORWARD LENGTH=895;; (*ITAG) Solyc09g098490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67561440-67568779 transcript_region:SL2.40ch09:67561440..67568779+ go_terms:GO:0005488 functional_description:"Epsin 2 (AHRD V1 *-*- Q5NCM7_MOUSE); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00012357g0011.1 protein AED:0.35 eAED:0.45 QI:0|0|0|1|1|1|2|0|104; (*ITAG) Solyc12g049210.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46070245-46070568 transcript_region:SL2.40ch12:46070245..46070568- functional_description:"Unknown Protein (AHRD V1)"; NbS00012357g0010.1 protein AED:0.59 eAED:0.66 QI:300|0|0.16|0.5|1|1|6|0|125 NbS00010997g0004.1 protein AED:0.08 eAED:0.14 QI:0|0.5|0.33|1|0.5|0.66|3|0|1019; (*GB) gi|225430107|ref|XP_002281922.1| (e_value=2e-137) PREDICTED: uncharacterized protein LOC100264575 [Vitis vinifera];; (*TAIR) AT4G32620.1 (e_value=4e-40) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr4:15731968-15737222 FORWARD LENGTH=1539;; (*ITAG) Solyc08g067920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54181062-54189739 transcript_region:SL2.40ch08:54181062..54189739+ go_terms:GO:0003676,GO:0008299 functional_description:"Nucleic acid binding protein (AHRD V1 *--- D7M9R5_ARALY); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003676,GO:0008299 NbS00033593g0008.1 protein AED:0.04 eAED:0.05 QI:310|0|0.5|1|0|0|2|0|280; (*GB) gi|388491254|gb|AFK33693.1| (e_value=3e-98) unknown [Lotus japonicus];; (*SWP) sp|Q9LV60|CRR55_ARATH (e_value=1e-77) Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana GN=CRRSP55 PE=2 SV=1;; (*TAIR) AT5G48540.1 (e_value=7e-79) | Symbols: | receptor-like protein kinase-related family protein | chr5:19669096-19669887 REVERSE LENGTH=263;; (*ITAG) Solyc09g057960.1.1 (e_value=2e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:48154504-48155289 transcript_region:SL2.40ch09:48154504..48155289- functional_description:"Cysteine-rich receptor-like protein kinase (AHRD V1 ***- C6ZRS1_SOYBN); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00005318g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|359482340|ref|XP_003632758.1| (e_value=3e-122) PREDICTED: uncharacterized protein LOC100241240 [Vitis vinifera];; (*TAIR) AT3G14180.1 (e_value=7e-62) | Symbols: | sequence-specific DNA binding transcription factors | chr3:4707290-4708621 REVERSE LENGTH=443;; (*ITAG) Solyc03g122030.1.1 (e_value=4e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64077325-64078416 transcript_region:SL2.40ch03:64077325..64078416+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7L2D2_ARALY)"; GO:0003700 NbS00005318g0003.1 protein AED:0.01 eAED:0.01 QI:294|1|0.75|1|0|0|4|0|47 NbS00020017g0011.1 protein AED:0.18 eAED:0.18 QI:855|1|1|1|0.72|0.75|12|817|119; (*GB) gi|225463149|ref|XP_002266845.1| (e_value=6e-33) PREDICTED: enhancer of polycomb homolog 2 [Vitis vinifera];; (*TAIR) AT1G16690.1 (e_value=2e-27) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr1:5706458-5709371 FORWARD LENGTH=439;; (*ITAG) Solyc02g081650.2.1 (e_value=7e-47) genomic_reference:SL2.40ch02 gene_region:40098912-40106547 transcript_region:SL2.40ch02:40098912..40106547+ go_terms:GO:0003700 functional_description:"Enhancer of polycomb-like protein (AHRD V1 ***- B9N5C9_POPTR); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003700 NbS00020017g0010.1 protein AED:0.41 eAED:0.84 QI:0|0|0|1|0|0|2|0|78 NbS00021967g0006.1 protein AED:0.18 eAED:0.18 QI:327|0.44|0.3|1|0.33|0.3|10|0|878; (*GB) gi|85068618|gb|ABC69389.1| (e_value=0.0) CYP72A52v1 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=6e-159) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=2e-159) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc10g007880.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2080596-2083797 transcript_region:SL2.40ch10:2080596..2083797+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017673g0012.1 protein AED:0.33 eAED:0.35 QI:411|0.4|0.5|1|0.6|0.66|6|0|124; (*GB) gi|242035931|ref|XP_002465360.1| (e_value=7e-23) hypothetical protein SORBIDRAFT_01g037160 [Sorghum bicolor];; (*TAIR) AT2G34410.2 (e_value=2e-24) | Symbols: | O-acetyltransferase family protein | chr2:14518719-14522053 FORWARD LENGTH=540;; (*ITAG) Solyc01g058270.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:58780420-58787167 transcript_region:SL2.40ch01:58780420..58787167+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00017673g0011.1 protein AED:0.04 eAED:0.04 QI:289|0.83|0.85|1|0.83|0.71|7|274|364; (*GB) gi|255567670|ref|XP_002524814.1| (e_value=2e-139) exonuclease, putative [Ricinus communis];; (*SWP) sp|Q4IEV5|REXO4_GIBZE (e_value=3e-24) RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1;; (*TAIR) AT2G48100.3 (e_value=1e-116) | Symbols: | Exonuclease family protein | chr2:19671245-19672847 FORWARD LENGTH=344;; (*ITAG) Solyc09g064740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57683157-57686815 transcript_region:SL2.40ch09:57683157..57686815+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- B6T4V3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00017673g0003.1 protein AED:0.03 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|197; (*ITAG) Solyc09g074040.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61224706-61225332 transcript_region:SL2.40ch09:61224706..61225332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026772g0009.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|178; (*GB) gi|359496589|ref|XP_003635272.1| (e_value=3e-16) PREDICTED: clathrin light chain 1-like [Vitis vinifera];; (*TAIR) AT2G40060.1 (e_value=7e-13) | Symbols: | Clathrin light chain protein | chr2:16726564-16728001 FORWARD LENGTH=258;; (*ITAG) Solyc02g078540.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:37780626-37784558 transcript_region:SL2.40ch02:37780626..37784558- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00026772g0022.1 protein AED:0.23 eAED:0.27 QI:68|0.68|0.65|1|0.47|0.5|20|0|569; (*GB) gi|255556614|ref|XP_002519341.1| (e_value=0.0) Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis];; (*SWP) sp|Q8MNV7|SMAL1_CAEEL (e_value=3e-53) Putative SMARCAL1-like protein OS=Caenorhabditis elegans GN=C16A3.1 PE=2 SV=1;; (*TAIR) AT1G48310.1 (e_value=7e-177) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00026772g0024.1 protein AED:0.06 eAED:0.06 QI:0|0.78|0.66|1|0.85|0.73|15|0|1385; (*GB) gi|255548261|ref|XP_002515187.1| (e_value=0.0) multidrug resistance protein 1, 2, putative [Ricinus communis];; (*SWP) sp|Q9FWX7|AB11B_ARATH (e_value=0.0) ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1;; (*TAIR) AT1G02520.1 (e_value=0.0) | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278;; (*ITAG) Solyc12g098840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64566859-64572340 transcript_region:SL2.40ch12:64566859..64572340+ go_terms:GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00026772g0020.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|421; (*GB) gi|225432200|ref|XP_002269582.1| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100242564 [Vitis vinifera];; (*TAIR) AT1G48300.1 (e_value=8e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:17847391-17848338 FORWARD LENGTH=285;; (*ITAG) Solyc12g098850.1.1 (e_value=3e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64573773-64575494 transcript_region:SL2.40ch12:64573773..64575494+ functional_description:"Soluble diacylglycerol acyltransferase (AHRD V1 *-*- B9S020_RICCO); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00029322g0004.1 protein AED:0.28 eAED:0.28 QI:355|1|0.88|1|1|1|9|0|269; (*GB) gi|56562175|emb|CAH60890.1| (e_value=3e-172) carbonic anhydrase [Solanum lycopersicum];; (*SWP) sp|P27141|CAHC_TOBAC (e_value=3e-127) Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G14740.1 (e_value=9e-124) | Symbols: CA2, CA18, BETA CA2 | carbonic anhydrase 2 | chr5:4758257-4762382 FORWARD LENGTH=331;; (*ITAG) Solyc05g005490.2.1 (e_value=6e-175) genomic_reference:SL2.40ch05 gene_region:355897-361496 transcript_region:SL2.40ch05:355897..361496- go_terms:GO:0005515 functional_description:"Carbonic anhydrase (AHRD V1 ***- Q5NE21_SOLLC); contains Interpro domain(s) IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site "; GO:0005515 NbS00027097g0003.1 protein AED:0.19 eAED:0.22 QI:278|0.90|0.83|1|0.45|0.41|12|201|414; (*GB) gi|224105457|ref|XP_002313817.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4F0|DAR1_ARATH (e_value=3e-58) Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3;; (*TAIR) AT4G36860.1 (e_value=2e-59) | Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553;; (*ITAG) Solyc01g105180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85211483-85216375 transcript_region:SL2.40ch01:85211483..85216375+ go_terms:GO:0043130 functional_description:"LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR)"; GO:0043130 NbS00001718g0001.1 protein AED:0.16 eAED:0.20 QI:380|0.5|0.66|1|0|0.33|3|0|222; (*GB) gi|225437166|ref|XP_002274823.1| (e_value=4e-42) PREDICTED: uncharacterized protein LOC100254442 [Vitis vinifera];; (*TAIR) AT3G63390.1 (e_value=2e-30) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23411416-23411943 REVERSE LENGTH=175;; (*ITAG) Solyc12g100320.1.1 (e_value=9e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65427340-65429750 transcript_region:SL2.40ch12:65427340..65429750- functional_description:"Unknown Protein (AHRD V1)"; NbS00035033g0004.1 protein AED:0.33 eAED:0.33 QI:203|0.6|0.66|1|0.4|0.5|6|0|212; (*GB) gi|359476412|ref|XP_002272657.2| (e_value=3e-32) PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SJA6|RZ22A_ARATH (e_value=8e-31) Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana GN=RSZ22A PE=1 SV=1;; (*TAIR) AT2G24590.1 (e_value=6e-32) | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif and CCHC-type zinc finger domains containing protein | chr2:10449837-10450860 FORWARD LENGTH=196;; (*ITAG) Solyc08g006430.2.1 (e_value=5e-35) genomic_reference:SL2.40ch08 gene_region:1030757-1039198 transcript_region:SL2.40ch08:1030757..1039198+ go_terms:GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 functional_description:"N-methyl-L-tryptophan oxidase (AHRD V1 *-*- D2ZAX1_9ENTR); contains Interpro domain(s) IPR006281 Sarcosine oxidase, monomeric "; GO:0003676,GO:0008270,GO:0016491,GO:0000166,GO:0055114 NbS00016729g0001.1 protein AED:0.22 eAED:0.22 QI:103|0.6|0.66|1|1|1|6|294|417; (*GB) gi|211905343|gb|ACJ11251.1| (e_value=0.0) Ted2 [Gossypium hirsutum];; (*SWP) sp|P43903|QOR_PSEAE (e_value=5e-94) Quinone oxidoreductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=qor PE=3 SV=2;; (*TAIR) AT5G61510.1 (e_value=0.0) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:24737084-24738975 REVERSE LENGTH=406;; (*ITAG) Solyc06g034120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20385126-20392654 transcript_region:SL2.40ch06:20385126..20392654+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 ***- A6X535_OCHA4); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00030416g0003.1 protein AED:0.15 eAED:0.21 QI:188|0|0.5|1|0|0.5|2|1084|357; (*GB) gi|359492922|ref|XP_002285705.2| (e_value=2e-100) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH145-like [Vitis vinifera];; (*SWP) sp|Q9FY69|BH143_ARATH (e_value=5e-24) Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1;; (*TAIR) AT5G09460.1 (e_value=4e-25) | Symbols: | sequence-specific DNA binding transcription factors;transcription regulators | chr5:2944437-2945417 REVERSE LENGTH=326;; (*ITAG) Solyc04g076030.1.1 (e_value=6e-177) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:58566926-58567891 transcript_region:SL2.40ch04:58566926..58567891- go_terms:GO:0003700 functional_description:"Transcription factor/ transcription regulator (AHRD V1 **** D7M240_ARALY)"; GO:0003700 NbS00006956g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|183|256; (*GB) gi|302142216|emb|CBI19419.3| (e_value=4e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54FR4|PX24D_DICDI (e_value=5e-23) PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1;; (*TAIR) AT5G43140.1 (e_value=3e-87) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321570-17323224 FORWARD LENGTH=254;; (*ITAG) Solyc04g078040.2.1 (e_value=9e-145) genomic_reference:SL2.40ch04 gene_region:60482286-60485636 transcript_region:SL2.40ch04:60482286..60485636- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- Q178F4_AEDAE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00006956g0008.1 protein AED:0.00 eAED:0.00 QI:43|1|1|1|0|0|2|223|252; (*GB) gi|321150024|gb|ADW66159.1| (e_value=3e-75) pistil-specific extensin-like protein [Solanum nigrum];; (*SWP) sp|Q03211|PEXLP_TOBAC (e_value=3e-25) Pistil-specific extensin-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G34700.1 (e_value=2e-33) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:14634298-14635597 REVERSE LENGTH=175;; (*ITAG) Solyc02g078040.2.1 (e_value=2e-74) genomic_reference:SL2.40ch02 gene_region:37435419-37436560 transcript_region:SL2.40ch02:37435419..37436560- go_terms:GO:0005199 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005199 NbS00054380g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0|2|372|281; (*GB) gi|359490753|ref|XP_003634156.1| (e_value=2e-96) PREDICTED: uncharacterized protein LOC100854009 [Vitis vinifera];; (*TAIR) AT5G24460.1 (e_value=2e-83) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8354815-8355717 FORWARD LENGTH=300;; (*ITAG) Solyc03g081220.1.1 (e_value=8e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45669593-45670462 transcript_region:SL2.40ch03:45669593..45670462+ functional_description:"Genomic DNA chromosome 5 BAC clone T7 (AHRD V1 ***- Q9FGE4_ARATH)"; NbS00018680g0004.1 protein AED:0.15 eAED:0.20 QI:0|0.42|0.25|1|0.42|0.62|8|192|509; (*GB) gi|225433298|ref|XP_002282340.1| (e_value=0.0) PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|B9SQR9|GATB_RICCO (e_value=0.0) Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis GN=GATB PE=3 SV=1;; (*TAIR) AT1G48520.1 (e_value=0.0) | Symbols: GATB | GLU-ADT subunit B | chr1:17940185-17942540 FORWARD LENGTH=550;; (*ITAG) Solyc09g090840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65590245-65596715 transcript_region:SL2.40ch09:65590245..65596715+ go_terms:GO:0008135,GO:0050567 functional_description:"Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (AHRD V1 ***- D4ZRW8_SPIPL); contains Interpro domain(s) IPR004413 Glutamyl-tRNA(Gln) amidotransferase, B subunit "; GO:0008135,GO:0050567 NbS00045940g0003.1 protein AED:0.08 eAED:0.43 QI:0|0.5|0.33|1|0|0|3|274|132 NbS00002718g0010.1 protein AED:0.20 eAED:0.23 QI:257|0|0.5|1|0.33|0.25|4|1025|139; (*GB) gi|224126513|ref|XP_002329573.1| (e_value=7e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|O82302|P2C29_ARATH (e_value=4e-29) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=3e-30) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g007000.2.1 (e_value=6e-33) genomic_reference:SL2.40ch08 gene_region:1576129-1582322 transcript_region:SL2.40ch08:1576129..1582322+ go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00002718g0011.1 protein AED:0.22 eAED:0.24 QI:0|0.33|0.14|1|0.83|0.71|7|0|989; (*GB) gi|225427238|ref|XP_002278429.1| (e_value=0.0) PREDICTED: protein phosphatase 2C 29-like [Vitis vinifera];; (*SWP) sp|O82302|P2C29_ARATH (e_value=8e-153) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=6e-154) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1576129-1582322 transcript_region:SL2.40ch08:1576129..1582322+ go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00015428g0013.1 protein AED:0.04 eAED:0.04 QI:305|0.66|0.75|1|0.66|0.75|4|238|187; (*GB) gi|147856607|emb|CAN82472.1| (e_value=3e-64) hypothetical protein VITISV_039788 [Vitis vinifera];; (*SWP) sp|Q5E971|TMEDA_BOVIN (e_value=5e-26) Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1;; (*TAIR) AT1G57620.1 (e_value=2e-61) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:21342863-21344581 FORWARD LENGTH=212;; (*ITAG) Solyc11g013000.1.1 (e_value=1e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5850497-5854023 transcript_region:SL2.40ch11:5850497..5854023+ go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00015428g0001.1 protein AED:0.31 eAED:0.31 QI:101|1|1|1|0.66|0.61|13|230|334; (*GB) gi|356515866|ref|XP_003526618.1| (e_value=2e-144) PREDICTED: uncharacterized protein LOC100817904 [Glycine max];; (*SWP) sp|A1A4Q2|PRXD1_BOVIN (e_value=3e-30) Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Bos taurus GN=PRORSD1 PE=2 SV=1;; (*TAIR) AT1G44835.1 (e_value=2e-124) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr1:16939909-16942337 FORWARD LENGTH=307;; (*ITAG) Solyc06g060420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34817950-34824473 transcript_region:SL2.40ch06:34817950..34824473- functional_description:"YbaK/prolyl-tRNA synthetase (AHRD V1 *-*- D0P7L2_BRUSU); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00031847g0005.1 protein AED:0.22 eAED:0.22 QI:555|0.75|0.8|1|0.75|0.6|5|0|159; (*GB) gi|316995995|dbj|BAD83417.2| (e_value=3e-76) maturase-related protein [Nicotiana tabacum];; (*ITAG) ATMG00520.1 (e_value=1e-65) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=8e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00031847g0110.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0.33|3|0|129 NbS00031847g0102.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|1|1|3|0|343 NbS00031847g0111.1 protein AED:0.25 eAED:0.49 QI:0|0|0|1|0|0|3|0|204 NbS00014566g0014.1 protein AED:0.00 eAED:0.00 QI:490|1|1|1|0.75|0.6|5|260|704; (*GB) gi|147838732|emb|CAN71826.1| (e_value=0.0) hypothetical protein VITISV_013841 [Vitis vinifera];; (*TAIR) AT3G15940.2 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:5393632-5396187 REVERSE LENGTH=697;; (*ITAG) Solyc03g120310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62797197-62801828 transcript_region:SL2.40ch03:62797197..62801828+ go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 *-*- A1ZR60_9BACT); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00014566g0016.1 protein AED:0.15 eAED:0.15 QI:143|0.72|0.75|1|0.90|0.83|12|430|790; (*GB) gi|262263165|dbj|BAI48085.1| (e_value=0.0) centromere protein C [Nicotiana tomentosiformis];; (*TAIR) AT1G15660.1 (e_value=5e-20) | Symbols: CENP-C | centromere protein C | chr1:5381230-5385057 FORWARD LENGTH=705;; (*ITAG) Solyc03g120340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62813294-62819881 transcript_region:SL2.40ch03:62813294..62819881- functional_description:"CENP-C (Fragment) (AHRD V1 *--- Q66LG8_SOLLC)"; NbS00014566g0019.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0.5|0.66|3|0|308; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-49) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=7e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00014566g0021.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.84|1|0.79|0.8|25|597|909; (*GB) gi|225442715|ref|XP_002284882.1| (e_value=0.0) PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit [Vitis vinifera];; (*SWP) sp|Q9DBB4|NAA16_MOUSE (e_value=2e-169) N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Mus musculus GN=Naa16 PE=2 SV=1;; (*TAIR) AT1G80410.1 (e_value=0.0) | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897;; (*ITAG) Solyc03g120350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62825268-62842470 transcript_region:SL2.40ch03:62825268..62842470+ go_terms:GO:0005515,GO:0004596 functional_description:"N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V1 **-* NAA16_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0004596 NbS00014566g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|215; (*GB) gi|224058800|ref|XP_002299632.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8L2|FBK30_ARATH (e_value=2e-34) F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1;; (*TAIR) AT1G80440.1 (e_value=1e-35) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:30241763-30242827 FORWARD LENGTH=354;; (*ITAG) Solyc03g120320.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62801895-62802962 transcript_region:SL2.40ch03:62801895..62802962- functional_description:"Kelch-like protein (AHRD V1 *-*- C4Q722_SCHMA); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00058677g0004.1 protein AED:0.06 eAED:0.06 QI:138|0.88|0.9|1|0.77|0.8|10|177|645; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=3e-56) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41894196-41899465 transcript_region:SL2.40ch06:41894196..41899465+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbC25945221g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|88; (*ITAG) Solyc10g049530.1.1 (e_value=7e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00009268g0019.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|114; (*GB) gi|147853777|emb|CAN83819.1| (e_value=2e-24) hypothetical protein VITISV_030951 [Vitis vinifera];; (*SWP) sp|O80439|RR31_ARATH (e_value=3e-18) 30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1;; (*TAIR) AT2G38140.1 (e_value=2e-19) | Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980948-15981459 FORWARD LENGTH=118;; (*ITAG) Solyc05g052710.2.1 (e_value=7e-42) genomic_reference:SL2.40ch05 gene_region:62055840-62057432 transcript_region:SL2.40ch05:62055840..62057432+ functional_description:"30S ribosomal protein S31, chloroplastic (AHRD V1 *-*- RR31_ARATH)"; NbS00009268g0017.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|200|179; (*GB) gi|113205399|gb|AAU90302.2| (e_value=6e-17) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00009268g0004.1 protein AED:0.15 eAED:0.28 QI:0|0.5|0.66|1|0.5|0.33|3|683|98 NbS00009268g0025.1 protein AED:0.75 eAED:0.85 QI:0|0|0|0.5|1|1|2|0|95 NbS00009268g0028.1 protein AED:0.19 eAED:0.25 QI:0|0|0.25|1|0.33|0.25|4|543|175; (*GB) gi|225448379|ref|XP_002269271.1| (e_value=1e-80) PREDICTED: pleckstrin homology domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=4e-66) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT5G05710.1 (e_value=2e-76) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144;; (*ITAG) Solyc05g052720.1.1 (e_value=1e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62059708-62060151 transcript_region:SL2.40ch05:62059708..62060151- go_terms:GO:0035091 functional_description:"Pleckstrin homology domain containing family A (Phosphoinositide binding specific) member 1 (AHRD V1 **-* Q0IIA5_BOVIN); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00009268g0022.1 protein AED:0.28 eAED:0.28 QI:24|0.75|0.8|0.8|1|0.8|5|323|514; (*GB) gi|224109332|ref|XP_002315162.1| (e_value=5e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40070.1 (e_value=2e-102) | Symbols: | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16728378-16731160 REVERSE LENGTH=607;; (*ITAG) Solyc03g096090.2.1 (e_value=8e-118) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00004092g0003.1 protein AED:0.01 eAED:0.01 QI:244|1|1|1|1|1|2|164|525; (*GB) gi|359492645|ref|XP_002281995.2| (e_value=0.0) PREDICTED: cytochrome P450 82A3 [Vitis vinifera];; (*SWP) sp|O49859|C82A4_SOYBN (e_value=2e-167) Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=7e-156) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc04g079680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61643971-61645817 transcript_region:SL2.40ch04:61643971..61645817+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002434g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|316927704|gb|ADU58605.1| (e_value=0.0) xyloglucan-specific endoglucanase inhibitor 4 [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=2e-78) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=1e-152) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71620732-71622320 transcript_region:SL2.40ch01:71620732..71622320+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ3_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00002434g0010.1 protein AED:0.06 eAED:0.06 QI:142|1|1|1|1|1|2|299|438; (*GB) gi|316927702|gb|ADU58604.1| (e_value=0.0) xyloglucan-specific endoglucanase inhibitor 8 [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=3e-73) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=2e-117) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71589234-71592343 transcript_region:SL2.40ch01:71589234..71592343- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00002434g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|218190504|gb|EEC72931.1| (e_value=1e-14) hypothetical protein OsI_06781 [Oryza sativa Indica Group];; (*ITAG) Solyc07g056380.1.1 (e_value=8e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00002434g0004.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=4e-17) predicted protein [Populus trichocarpa]; NbC25269519g0003.1 protein AED:0.32 eAED:0.56 QI:0|0|0.5|1|1|1|2|0|99 NbS00035332g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|4|1475|503; (*GB) gi|255536799|ref|XP_002509466.1| (e_value=0.0) protein-tyrosine kinase, putative [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=7e-113) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G58950.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525;; (*ITAG) Solyc02g078140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37494938-37497613 transcript_region:SL2.40ch02:37494938..37497613- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q39886_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00035332g0011.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.25|1|1|4|0|217; (*GB) gi|224125352|ref|XP_002329784.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT4G20970.1 (e_value=2e-31) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:11215259-11216212 FORWARD LENGTH=190;; (*ITAG) Solyc02g078130.2.1 (e_value=7e-60) genomic_reference:SL2.40ch02 gene_region:37488040-37489650 transcript_region:SL2.40ch02:37488040..37489650+ go_terms:GO:0003700 functional_description:"Basic helix-loop-helix family protein (AHRD V1 ***- D7MFG5_ARALY); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00035332g0014.1 protein AED:0.19 eAED:0.19 QI:34|0|0.33|0.66|0.5|0.33|3|0|168; (*GB) gi|224125352|ref|XP_002329784.1| (e_value=2e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT4G20970.1 (e_value=4e-27) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:11215259-11216212 FORWARD LENGTH=190;; (*ITAG) Solyc02g078130.2.1 (e_value=3e-45) genomic_reference:SL2.40ch02 gene_region:37488040-37489650 transcript_region:SL2.40ch02:37488040..37489650+ go_terms:GO:0003700 functional_description:"Basic helix-loop-helix family protein (AHRD V1 ***- D7MFG5_ARALY); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00035332g0005.1 protein AED:0.86 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|384 NbS00052601g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0|0.5|1|1|4|0|91; (*GB) gi|224137158|ref|XP_002327047.1| (e_value=4e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VEF1|GRM1A_MOUSE (e_value=4e-19) GRAM domain-containing protein 1A OS=Mus musculus GN=Gramd1a PE=2 SV=2;; (*TAIR) AT1G02120.1 (e_value=1e-42) | Symbols: VAD1 | GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598;; (*ITAG) Solyc01g090230.2.1 (e_value=6e-50) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00012007g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0.33|3|0|78 NbS00012007g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|345; (*GB) gi|224111802|ref|XP_002315983.1| (e_value=1e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96519|PER11_ARATH (e_value=5e-164) Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1;; (*TAIR) AT1G68850.1 (e_value=4e-165) | Symbols: | Peroxidase superfamily protein | chr1:25883806-25885177 REVERSE LENGTH=336;; (*ITAG) Solyc05g010330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4476583-4479812 transcript_region:SL2.40ch05:4476583..4479812+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00001134g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|736; (*GB) gi|350535018|ref|NP_001234427.1| (e_value=0.0) EIX receptor 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9FIZ3|GSO2_ARATH (e_value=1e-61) LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=1e-95) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:3569571-3572666 transcript_region:SL2.40ch07:3569571..3572666- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00001134g0008.1 protein AED:0.05 eAED:0.06 QI:12|0|0|1|0|0|2|0|796; (*GB) gi|255552969|ref|XP_002517527.1| (e_value=0.0) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=0.0) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=0.0) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00045590g0004.1 protein AED:0.12 eAED:0.12 QI:519|1|0.5|1|0|0.5|2|0|223; (*GB) gi|225438968|ref|XP_002284296.1| (e_value=5e-77) PREDICTED: LOB domain-containing protein 38 [Vitis vinifera];; (*SWP) sp|Q9FN11|LBD37_ARATH (e_value=1e-70) LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1;; (*TAIR) AT5G67420.1 (e_value=1e-71) | Symbols: LBD37, ASL39 | LOB domain-containing protein 37 | chr5:26904576-26905415 REVERSE LENGTH=250;; (*ITAG) Solyc01g107190.2.1 (e_value=2e-136) genomic_reference:SL2.40ch01 gene_region:86579758-86580843 transcript_region:SL2.40ch01:86579758..86580843+ functional_description:"LOB domain protein 38 (AHRD V1 *-*- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00002019g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|225452562|ref|XP_002280547.1| (e_value=2e-71) PREDICTED: peroxidase 31-like [Vitis vinifera];; (*SWP) sp|Q9FL16|PER63_ARATH (e_value=2e-68) Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1;; (*TAIR) AT5G40150.1 (e_value=1e-69) | Symbols: | Peroxidase superfamily protein | chr5:16059750-16060736 REVERSE LENGTH=328;; (*ITAG) Solyc02g087190.1.1 (e_value=2e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44243351-44244337 transcript_region:SL2.40ch02:44243351..44244337+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 65 (AHRD V1 **** B6TYF5_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00010215g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.6|0.5|0.83|0.8|1|6|276|156; (*GB) gi|255571087|ref|XP_002526494.1| (e_value=3e-90) 40S ribosomal protein S11, putative [Ricinus communis];; (*SWP) sp|P17093|RS11_SOYBN (e_value=5e-91) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=1e-88) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=2e-96) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00023004g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|409; (*GB) gi|255582211|ref|XP_002531898.1| (e_value=8e-134) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GX29|SKI25_ARATH (e_value=1e-103) F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1;; (*TAIR) AT1G31350.1 (e_value=1e-104) | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221519-11222706 REVERSE LENGTH=395;; (*ITAG) Solyc08g005930.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:703043-704203 transcript_region:SL2.40ch08:703043..704203- functional_description:"F-box family protein (AHRD V1 ***- D7KL20_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00003266g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|3|0|412; (*GB) gi|255539236|ref|XP_002510683.1| (e_value=8e-80) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6YRM6|Y8219_ORYSJ (e_value=3e-30) UPF0392 protein Os08g0121900 OS=Oryza sativa subsp. japonica GN=Os08g0121900 PE=2 SV=1;; (*TAIR) AT4G37420.1 (e_value=3e-72) | Symbols: | Domain of unknown function (DUF23) | chr4:17593123-17594889 FORWARD LENGTH=588;; (*ITAG) Solyc04g082520.1.1 (e_value=3e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63765366-63766988 transcript_region:SL2.40ch04:63765366..63766988- functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00003266g0001.1 protein AED:0.20 eAED:0.21 QI:0|0.75|0.66|1|1|1|9|0|717; (*GB) gi|359491912|ref|XP_002272566.2| (e_value=7e-155) PREDICTED: uncharacterized protein LOC100244510 [Vitis vinifera];; (*SWP) sp|Q9ULD4|BRPF3_HUMAN (e_value=1e-21) Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2;; (*TAIR) AT1G20670.1 (e_value=5e-108) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc04g082530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63767730-63772749 transcript_region:SL2.40ch04:63767730..63772749- functional_description:"Bromodomain-containing protein (AHRD V1 ***- B9R8P3_RICCO); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00003266g0013.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0|1|0.33|0.25|4|0|233; (*GB) gi|133712623|gb|ABO37118.1| (e_value=3e-115) cuticular water permeability [Solanum habrochaites];; (*SWP) sp|P54797|T10_MOUSE (e_value=3e-19) Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2 SV=1;; (*TAIR) AT4G38260.1 (e_value=9e-64) | Symbols: | Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275;; (*ITAG) Solyc04g082540.1.1 (e_value=6e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63777368-63779533 transcript_region:SL2.40ch04:63777368..63779533+ go_terms:GO:0005515 functional_description:"Ser/Thr-rich protein T10 in DGCR region (AHRD V1 **-- B6TDB2_MAIZE); contains Interpro domain(s) IPR008551 Protein of unknown function DUF833 "; GO:0005515 NbS00014378g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|1|1|5|0|519; (*GB) gi|359494374|ref|XP_002265613.2| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 6-like [Vitis vinifera];; (*SWP) sp|Q9SA22|P2C06_ARATH (e_value=0.0) Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1;; (*TAIR) AT1G16220.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:5548653-5550553 FORWARD LENGTH=491;; (*ITAG) Solyc07g066260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64967366-64971589 transcript_region:SL2.40ch07:64967366..64971589- go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00003988g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|357502731|ref|XP_003621654.1| (e_value=5e-35) Disease resistance response protein [Medicago truncatula];; (*TAIR) AT2G39430.1 (e_value=2e-33) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=2e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00003988g0004.1 protein AED:0.26 eAED:0.45 QI:173|0.5|0.66|1|0|0|3|0|81; (*GB) gi|255564072|ref|XP_002523034.1| (e_value=1e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G55240.1 (e_value=2e-24) | Symbols: | Plant protein 1589 of unknown function | chr3:20473876-20474705 REVERSE LENGTH=95;; (*ITAG) Solyc00g280110.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20807678-20808496 transcript_region:SL2.40ch00:20807678..20808496- functional_description:"Plant-specific domain TIGR01589 family protein (AHRD V1 ***- B4FFL2_MAIZE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00026782g0009.1 protein AED:0.18 eAED:0.18 QI:228|0.89|0.9|1|0.93|0.9|30|486|1391; (*GB) gi|359475843|ref|XP_002282918.2| (e_value=0.0) PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc06g065730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37557813-37598461 transcript_region:SL2.40ch06:37557813..37598461+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00026782g0010.1 protein AED:0.20 eAED:0.20 QI:182|0.66|0.75|1|1|1|4|0|180; (*GB) gi|225430378|ref|XP_002285330.1| (e_value=2e-95) PREDICTED: Golgi SNARE 11 protein [Vitis vinifera];; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=1e-90) Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1;; (*TAIR) AT1G15880.1 (e_value=9e-92) | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458718-5460089 REVERSE LENGTH=223;; (*ITAG) Solyc06g065740.2.1 (e_value=2e-122) genomic_reference:SL2.40ch06 gene_region:37599549-37605829 transcript_region:SL2.40ch06:37599549..37605829+ go_terms:GO:0000149 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 ***- B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149 NbS00026782g0011.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|1|1|2|0|75; (*GB) gi|357467837|ref|XP_003604203.1| (e_value=5e-39) Golgi SNARE 11 protein [Medicago truncatula];; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=3e-39) Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1;; (*TAIR) AT1G15880.1 (e_value=2e-40) | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458718-5460089 REVERSE LENGTH=223;; (*ITAG) Solyc06g065740.2.1 (e_value=5e-49) genomic_reference:SL2.40ch06 gene_region:37599549-37605829 transcript_region:SL2.40ch06:37599549..37605829+ go_terms:GO:0000149 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 ***- B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149 NbS00002663g0011.1 protein AED:0.11 eAED:0.11 QI:213|0.25|0.2|1|0.25|0.2|5|0|515; (*GB) gi|225431521|ref|XP_002275218.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Vitis vinifera];; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc03g078090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:43597039-43600438 transcript_region:SL2.40ch03:43597039..43600438+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00002663g0004.1 protein AED:0.29 eAED:0.29 QI:359|0.85|0.87|1|0.85|0.75|8|401|300; (*GB) gi|356512819|ref|XP_003525113.1| (e_value=1e-163) PREDICTED: uridylate kinase-like [Glycine max];; (*SWP) sp|Q2JS42|PYRH_SYNJA (e_value=3e-109) Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1;; (*TAIR) AT3G18680.1 (e_value=1e-164) | Symbols: | Amino acid kinase family protein | chr3:6427533-6429520 FORWARD LENGTH=339;; (*ITAG) Solyc03g078080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:43589225-43595462 transcript_region:SL2.40ch03:43589225..43595462+ go_terms:GO:0005515,GO:0009041 functional_description:"Uridylate kinase (AHRD V1 **** B6TC37_MAIZE); contains Interpro domain(s) IPR015963 Uridylate kinase, bacteria "; GO:0005515,GO:0009041 NbS00006281g0014.1 protein AED:0.14 eAED:0.15 QI:0|0.38|0.26|0.89|0.33|0.36|19|0|2444; (*GB) gi|359494131|ref|XP_003634725.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264016 [Vitis vinifera];; (*SWP) sp|O60287|NPA1P_HUMAN (e_value=2e-24) Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4;; (*TAIR) AT4G27010.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13558943-13568296 FORWARD LENGTH=2374;; (*ITAG) Solyc02g065500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31242390-31258151 transcript_region:SL2.40ch02:31242390..31258151- go_terms:GO:0016021 functional_description:"Nucleolar pre-ribosomal-associated protein 1 (AHRD V1 *--- NPA1P_HUMAN)"; GO:0016021 NbS00026351g0012.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.5|0.66|3|350|192; (*GB) gi|224131138|ref|XP_002321010.1| (e_value=8e-97) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02870.1 (e_value=6e-89) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:637401-638603 REVERSE LENGTH=193;; (*ITAG) Solyc09g075030.2.1 (e_value=3e-111) genomic_reference:SL2.40ch09 gene_region:62328448-62330766 transcript_region:SL2.40ch09:62328448..62330766+ functional_description:"Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis (ISS) (AHRD V1 *-*- Q01AF2_OSTTA); contains Interpro domain(s) IPR019002 Ribosome biogenesis protein Nop16 "; NbS00026351g0010.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|303|285; (*GB) gi|147853033|emb|CAN81258.1| (e_value=8e-120) hypothetical protein VITISV_000965 [Vitis vinifera];; (*SWP) sp|Q8LEA8|EID1_ARATH (e_value=2e-110) Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2;; (*TAIR) AT4G02440.1 (e_value=2e-111) | Symbols: EID1 | F-box family protein | chr4:1072555-1073565 FORWARD LENGTH=336;; (*ITAG) Solyc09g075080.2.1 (e_value=5e-153) genomic_reference:SL2.40ch09 gene_region:62390490-62393444 transcript_region:SL2.40ch09:62390490..62393444- go_terms:GO:0005515,GO:0004842 functional_description:"Phytochrome A-associated F-box protein (AHRD V1 ***- EID1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00026351g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|1|1|10|159|1536; (*GB) gi|255564132|ref|XP_002523063.1| (e_value=0.0) multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q9LZJ5|AB14C_ARATH (e_value=0.0) ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1;; (*TAIR) AT3G62700.1 (e_value=0.0) | Symbols: ATMRP10, MRP10, ABCC14 | multidrug resistance-associated protein 10 | chr3:23190428-23195727 REVERSE LENGTH=1539;; (*ITAG) Solyc09g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62318647-62327379 transcript_region:SL2.40ch09:62318647..62327379+ go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GS96_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00026351g0016.1 protein AED:0.40 eAED:0.40 QI:51|1|1|1|1|1|10|137|267; (*GB) gi|255564164|ref|XP_002523079.1| (e_value=3e-96) arginine/serine-rich splicing factor, putative [Ricinus communis];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=1e-88) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G02840.3 (e_value=1e-89) | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303;; (*ITAG) Solyc09g075090.1.1 (e_value=5e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62395517-62400644 transcript_region:SL2.40ch09:62395517..62400644- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00026351g0015.1 protein AED:0.48 eAED:0.50 QI:0|0|0.5|0.75|0|0.25|4|179|125 NbS00024160g0006.1 protein AED:0.20 eAED:0.20 QI:70|1|1|1|0.5|0.6|5|342|185; (*GB) gi|388493190|gb|AFK34661.1| (e_value=1e-81) unknown [Lotus japonicus];; (*SWP) sp|Q28DS3|RN170_XENTR (e_value=2e-27) RING finger protein 170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1;; (*TAIR) AT1G72175.1 (e_value=6e-79) | Symbols: | RING/U-box protein with domain of unknown function (DUF 1232) | chr1:27157978-27159359 FORWARD LENGTH=185;; (*ITAG) Solyc11g027810.1.1 (e_value=4e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:15583237-15585790 transcript_region:SL2.40ch11:15583237..15585790- functional_description:"RING finger protein 170 (AHRD V1 ***- B5X7S9_SALSA); contains Interpro domain(s) IPR010652 Protein of unknown function DUF1232 "; NbS00024160g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|262; (*GB) gi|193527448|gb|ACF19789.1| (e_value=1e-19) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00024160g0103.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|333 NbS00024192g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|224140483|ref|XP_002323612.1| (e_value=4e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=2e-58) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT5G01610.1 (e_value=1e-59) | Symbols: | Protein of unknown function, DUF538 | chr5:231075-231994 FORWARD LENGTH=170;; (*ITAG) Solyc09g015420.2.1 (e_value=2e-68) genomic_reference:SL2.40ch09 gene_region:8732762-8734631 transcript_region:SL2.40ch09:8732762..8734631+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00000768g0007.1 protein AED:0.19 eAED:0.19 QI:96|1|0.66|1|1|1|3|256|149; (*GB) gi|225431749|ref|XP_002269805.1| (e_value=9e-80) PREDICTED: protein FAM136A [Vitis vinifera];; (*SWP) sp|A4QNC6|F136A_XENTR (e_value=1e-11) Protein FAM136A OS=Xenopus tropicalis GN=fam136a PE=2 SV=1;; (*TAIR) AT1G05730.1 (e_value=3e-74) | Symbols: | Eukaryotic protein of unknown function (DUF842) | chr1:1719107-1720159 FORWARD LENGTH=149;; (*ITAG) Solyc08g014300.2.1 (e_value=3e-86) genomic_reference:SL2.40ch08 gene_region:4000950-4003880 transcript_region:SL2.40ch08:4000950..4003880+ go_terms:GO:0005515 functional_description:"FAM136A (AHRD V1 ***- B5XEE9_SALSA); contains Interpro domain(s) IPR008560 Protein of unknown function DUF842, eukaryotic "; GO:0005515 NbS00007743g0006.1 protein AED:0.29 eAED:0.29 QI:198|1|1|1|1|1|2|98|235; (*ITAG) Solyc05g008140.2.1 (e_value=6e-68) genomic_reference:SL2.40ch05 gene_region:2536494-2539869 transcript_region:SL2.40ch05:2536494..2539869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006311 Twin-arginine translocation pathway signal "; NbS00007743g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|255586331|ref|XP_002533816.1| (e_value=3e-135) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01410.1 (e_value=2e-123) | Symbols: | NHL domain-containing protein | chr2:175209-176372 REVERSE LENGTH=387;; (*ITAG) Solyc04g007660.1.1 (e_value=6e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1354361-1355470 transcript_region:SL2.40ch04:1354361..1355470- functional_description:"SMP-30/Gluconolaconase/LRE domain protein (AHRD V1 ***- A5FD91_FLAJ1); contains Interpro domain(s) IPR013658 SMP-30/Gluconolaconase/LRE-like region "; NbS00007743g0008.1 protein AED:0.08 eAED:0.19 QI:0|0|0|1|0|0|3|0|137; (*ITAG) Solyc01g010680.1.1 (e_value=7e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:5698129-5701473 transcript_region:SL2.40ch01:5698129..5701473+ functional_description:"Genomic DNA chromosome 5 P1 clone MRD20 (AHRD V1 *--- Q9FH72_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00033003g0013.1 protein AED:0.24 eAED:0.28 QI:0|0.25|0.2|1|0.5|0.2|5|0|233; (*GB) gi|225429027|ref|XP_002267686.1| (e_value=4e-36) PREDICTED: uncharacterized protein LOC100241214 [Vitis vinifera];; (*TAIR) AT4G33800.1 (e_value=7e-16) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16210404-16211307 REVERSE LENGTH=170;; (*ITAG) Solyc01g106910.2.1 (e_value=2e-61) genomic_reference:SL2.40ch01 gene_region:86381562-86382592 transcript_region:SL2.40ch01:86381562..86382592- functional_description:"Unknown Protein (AHRD V1)"; NbS00033003g0014.1 protein AED:0.08 eAED:0.09 QI:0|0.71|0.5|0.87|0.71|0.75|8|0|600; (*GB) gi|225429039|ref|XP_002268333.1| (e_value=0.0) PREDICTED: magnesium transporter MRS2-3-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LJN2|MRS23_ARATH (e_value=2e-147) Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=1 SV=1;; (*TAIR) AT3G19640.1 (e_value=2e-148) | Symbols: MGT4, MRS2-3 | magnesium transporter 4 | chr3:6820969-6823104 FORWARD LENGTH=484;; (*ITAG) Solyc01g106900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86369662-86378019 transcript_region:SL2.40ch01:86369662..86378019+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-3 (AHRD V1 **** MRS23_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00033003g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.75|1|0.85|0.75|8|343|315; (*GB) gi|225429203|ref|XP_002271957.1| (e_value=6e-135) PREDICTED: ribosomal RNA small subunit methyltransferase E-like [Vitis vinifera];; (*SWP) sp|P54461|RSME_BACSU (e_value=3e-15) Ribosomal RNA small subunit methyltransferase E OS=Bacillus subtilis (strain 168) GN=rsmE PE=1 SV=1;; (*TAIR) AT1G50000.1 (e_value=3e-129) | Symbols: | methyltransferases | chr1:18515183-18517244 REVERSE LENGTH=296;; (*ITAG) Solyc01g106880.2.1 (e_value=7e-175) genomic_reference:SL2.40ch01 gene_region:86356164-86360453 transcript_region:SL2.40ch01:86356164..86360453+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase E (AHRD V1 ***- C6WZC1_FLAB3); contains Interpro domain(s) IPR006700 Ribosomal RNA small subunit methyltransferase E "; GO:0006364 NbS00033003g0006.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|100; (*GB) gi|224060879|ref|XP_002300282.1| (e_value=3e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19660.1 (e_value=6e-17) | Symbols: | unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6825678-6825872 REVERSE LENGTH=64;; (*ITAG) Solyc01g106890.2.1 (e_value=8e-23) genomic_reference:SL2.40ch01 gene_region:86361582-86362118 transcript_region:SL2.40ch01:86361582..86362118+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023367g0011.1 protein AED:0.12 eAED:0.12 QI:345|0.92|0.93|1|0.64|0.6|15|434|566; (*GB) gi|255561365|ref|XP_002521693.1| (e_value=0.0) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SVE7|MATE3_ARATH (e_value=1e-175) MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2;; (*TAIR) AT4G38380.1 (e_value=9e-177) | Symbols: | MATE efflux family protein | chr4:17971855-17974787 REVERSE LENGTH=560;; (*ITAG) Solyc02g061760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27854434-27861277 transcript_region:SL2.40ch02:27854434..27861277- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7LLI9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00023367g0008.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|3|0|396; (*GB) gi|255561371|ref|XP_002521696.1| (e_value=1e-119) AMP dependent ligase, putative [Ricinus communis];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=3e-107) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=2e-108) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc03g032210.2.1 (e_value=3e-125) genomic_reference:SL2.40ch03 gene_region:8995213-8998256 transcript_region:SL2.40ch03:8995213..8998256+ go_terms:GO:0018858,GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858,GO:0016208 NbS00020704g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|225434879|ref|XP_002283212.1| (e_value=7e-109) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=7e-32) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT3G46620.1 (e_value=8e-84) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17178837-17180024 REVERSE LENGTH=395;; (*ITAG) Solyc04g011610.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00020704g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|336; (*GB) gi|255559034|ref|XP_002520540.1| (e_value=2e-163) zinc transporter, putative [Ricinus communis];; (*SWP) sp|Q94DG6|ZIP1_ORYSJ (e_value=2e-134) Zinc transporter 1 OS=Oryza sativa subsp. japonica GN=ZIP1 PE=1 SV=1;; (*TAIR) AT5G59520.1 (e_value=6e-128) | Symbols: ZIP2 | ZRT/IRT-like protein 2 | chr5:23991447-23992762 REVERSE LENGTH=353;; (*ITAG) Solyc06g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:678159-680743 transcript_region:SL2.40ch06:678159..680743- go_terms:GO:0005375 functional_description:"Zinc transporter (AHRD V1 **** Q9AWG7_MEDTR); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0005375 NbS00020704g0013.1 protein AED:0.45 eAED:0.47 QI:279|0.33|0.25|1|0.33|0.25|4|0|189; (*ITAG) Solyc06g005630.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:692091-694915 transcript_region:SL2.40ch06:692091..694915- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase arkadia (AHRD V1 *-** RN111_XENTR); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00020704g0014.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|0|1|2|0|144 NbS00020704g0015.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|3|0|453; (*GB) gi|147838046|emb|CAN65210.1| (e_value=8e-170) hypothetical protein VITISV_043548 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=1e-106) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc01g006770.1.1 (e_value=4e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1351345-1354626 transcript_region:SL2.40ch01:1351345..1354626+ go_terms:GO:0016757 functional_description:"Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 (AHRD V1 *--- C1GLT_HUMAN); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00020704g0018.1 protein AED:0.40 eAED:0.76 QI:0|0|0|1|0|0|4|0|122 NbS00039255g0003.1 protein AED:0.15 eAED:0.15 QI:104|1|0.87|1|1|1|8|0|671; (*GB) gi|225445450|ref|XP_002285089.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266409 [Vitis vinifera];; (*TAIR) AT5G20170.1 (e_value=0.0) | Symbols: | RNA polymerase II transcription mediators | chr5:6807554-6810729 REVERSE LENGTH=653;; (*ITAG) Solyc12g006650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1115147-1119904 transcript_region:SL2.40ch12:1115147..1119904+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020710g0015.1 protein AED:0.17 eAED:0.17 QI:253|1|1|1|0.64|0.66|15|467|438; (*GB) gi|6328415|dbj|BAA86386.1| (e_value=0.0) transcription factor [Nicotiana tabacum];; (*SWP) sp|Q9FV71|E2FB_ARATH (e_value=7e-145) Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1;; (*TAIR) AT5G22220.2 (e_value=5e-146) | Symbols: E2F1, E2FB, ATE2FB | E2F transcription factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469;; (*ITAG) Solyc11g068800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50504117-50508808 transcript_region:SL2.40ch11:50504117..50508808- go_terms:GO:0005667 functional_description:"Transcription factor (E2F) (AHRD V1 ***- Q9FNS0_CHERU); contains Interpro domain(s) IPR015633 E2F Family "; GO:0005667 NbS00020710g0014.1 protein AED:0.02 eAED:0.02 QI:271|1|1|1|0.75|0.6|5|314|146; (*GB) gi|388502304|gb|AFK39218.1| (e_value=9e-90) unknown [Lotus japonicus];; (*SWP) sp|Q9SJ44|UEV1C_ARATH (e_value=2e-86) Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1;; (*TAIR) AT2G36060.1 (e_value=2e-87) | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15143012-15143998 REVERSE LENGTH=145;; (*ITAG) Solyc10g083120.1.1 (e_value=2e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62310434-62314944 transcript_region:SL2.40ch10:62310434..62314944- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme family protein-like (AHRD V1 ***- Q3HVN0_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00020710g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|15229906|ref|NP_190008.1| (e_value=3e-83) late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana];; (*TAIR) AT3G44220.1 (e_value=7e-86) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:15928216-15929645 FORWARD LENGTH=206;; (*ITAG) Solyc06g074040.1.1 (e_value=2e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42162942-42163568 transcript_region:SL2.40ch06:42162942..42163568- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZH6_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00020710g0016.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|392; (*GB) gi|110293351|gb|ABG66307.1| (e_value=9e-161) CCR4 associated factor 1-related protein [Capsicum annuum];; (*SWP) sp|Q9LXM2|CAF1I_ARATH (e_value=5e-138) Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1;; (*TAIR) AT3G44260.1 (e_value=4e-139) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:15952213-15953055 REVERSE LENGTH=280;; (*ITAG) Solyc06g074030.1.1 (e_value=4e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42156677-42157471 transcript_region:SL2.40ch06:42156677..42157471- go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00042695g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|372; (*GB) gi|2499614|sp|Q40517.1|NTF3_TOBAC (e_value=0.0) RecName: Full=Mitogen-activated protein kinase homolog NTF3; AltName: Full=P43;; (*SWP) sp|Q40517|NTF3_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1;; (*TAIR) AT1G10210.2 (e_value=0.0) | Symbols: ATMPK1, MPK1 | mitogen-activated protein kinase 1 | chr1:3349579-3350776 FORWARD LENGTH=370;; (*ITAG) Solyc04g080730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62421080-62429518 transcript_region:SL2.40ch04:62421080..62429518+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** D9J1Y9_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00040316g0007.1 protein AED:0.10 eAED:0.10 QI:225|0.5|0.66|0.66|1|1|3|0|137; (*GB) gi|224064015|ref|XP_002301349.1| (e_value=4e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXK6|RH8_ARATH (e_value=5e-16) DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1;; (*TAIR) AT4G00660.1 (e_value=4e-17) | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505;; (*ITAG) Solyc01g094350.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:77623372-77632344 transcript_region:SL2.40ch01:77623372..77632344+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA Helicase (AHRD V1 ***- Q7PDT0_PLAYO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00008252g0104.1 protein AED:0.00 eAED:0.00 QI:27|1|1|1|0|1|2|226|350 NbS00008252g0101.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|397 NbS00014189g0001.1 protein AED:0.31 eAED:0.31 QI:308|0.5|0.46|1|0.91|0.84|13|324|498; (*GB) gi|218201024|gb|EEC83451.1| (e_value=1e-153) hypothetical protein OsI_28949 [Oryza sativa Indica Group];; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=9e-84) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.2 (e_value=7e-86) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:551534-554411 FORWARD LENGTH=333;; (*ITAG) Solyc05g008810.2.1 (e_value=3e-126) genomic_reference:SL2.40ch05 gene_region:3043133-3047831 transcript_region:SL2.40ch05:3043133..3047831- go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00048356g0005.1 protein AED:0.13 eAED:0.13 QI:259|0.57|0.65|0.9|0.68|0.7|20|906|643; (*GB) gi|9293959|dbj|BAB01862.1| (e_value=0.0) chaperonin, t-complex protein alpha subunit [Arabidopsis thaliana];; (*SWP) sp|P28769|TCPA_ARATH (e_value=0.0) T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1;; (*TAIR) AT3G20050.1 (e_value=0.0) | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha subunit | chr3:6998544-7002266 REVERSE LENGTH=545;; (*ITAG) Solyc01g090750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76162903-76172451 transcript_region:SL2.40ch01:76162903..76172451+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit alpha (AHRD V1 ***- B9SF60_RICCO); contains Interpro domain(s) IPR012715 T-complex protein 1, alpha subunit "; GO:0051082 NbC24568733g0003.1 protein AED:0.10 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|146; (*GB) gi|126143476|dbj|BAF47277.1| (e_value=2e-79) lectin-receptor like protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=1e-45) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G04960.1 (e_value=9e-47) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:2533096-2535156 FORWARD LENGTH=686;; (*ITAG) Solyc02g078170.1.1 (e_value=3e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00026393g0012.1 protein AED:0.09 eAED:0.09 QI:503|1|1|1|0.5|0.4|5|484|249; (*GB) gi|225428551|ref|XP_002280976.1| (e_value=1e-136) PREDICTED: UPF0326 protein At4g17486-like [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=5e-69) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G47740.2 (e_value=3e-106) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:17567903-17569035 FORWARD LENGTH=279;; (*ITAG) Solyc01g109430.2.1 (e_value=2e-179) genomic_reference:SL2.40ch01 gene_region:88144922-88146935 transcript_region:SL2.40ch01:88144922..88146935- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00026393g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|302; (*GB) gi|315143145|gb|ADT82707.1| (e_value=1e-113) adenylate isopentenyltransferase [Malus x domestica];; (*SWP) sp|Q94ID2|IPT5_ARATH (e_value=9e-103) Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2;; (*TAIR) AT5G19040.1 (e_value=7e-104) | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 | chr5:6362389-6363381 REVERSE LENGTH=330;; (*ITAG) Solyc01g080150.2.1 (e_value=7e-102) genomic_reference:SL2.40ch01 gene_region:71838477-71840230 transcript_region:SL2.40ch01:71838477..71840230+ go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- B6JYB4_SCHJY); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00026393g0011.1 protein AED:0.15 eAED:0.15 QI:273|0.5|0.33|0.66|0.5|1|3|0|254; (*GB) gi|255556109|ref|XP_002519089.1| (e_value=7e-114) Minor allergen Alt a, putative [Ricinus communis];; (*SWP) sp|Q39XL1|WRBA_GEOMG (e_value=4e-50) Flavoprotein WrbA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G36750.1 (e_value=1e-107) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc01g109420.2.1 (e_value=4e-143) genomic_reference:SL2.40ch01 gene_region:88142029-88144096 transcript_region:SL2.40ch01:88142029..88144096- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00026393g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.92|1|0.83|0.92|13|308|438; (*GB) gi|225428556|ref|XP_002284627.1| (e_value=0.0) PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Vitis vinifera];; (*SWP) sp|Q6NYS8|OST48_DANRE (e_value=8e-113) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Danio rerio GN=ddost PE=2 SV=2;; (*TAIR) AT5G66680.1 (e_value=0.0) | Symbols: DGL1 | dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein | chr5:26617840-26620581 REVERSE LENGTH=437;; (*ITAG) Solyc01g109410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88132748-88140649 transcript_region:SL2.40ch01:88132748..88140649- go_terms:GO:0005515 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (AHRD V1 ***- C1C2G2_9MAXI); contains Interpro domain(s) IPR005013 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit "; GO:0005515 NbS00040301g0009.1 protein AED:0.22 eAED:0.22 QI:669|0.75|0.8|1|1|1|5|351|495; (*GB) gi|110676572|gb|ABG85154.1| (e_value=0.0) RhoGAP1 [Nicotiana tabacum];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=5e-20) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT5G22400.1 (e_value=3e-167) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466;; (*ITAG) Solyc11g068520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50302920-50308182 transcript_region:SL2.40ch11:50302920..50308182+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00040301g0006.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|1|1|2|0|225; (*GB) gi|359479553|ref|XP_002273863.2| (e_value=8e-23) PREDICTED: uncharacterized protein LOC100243219 [Vitis vinifera];; (*ITAG) Solyc11g068530.1.1 (e_value=8e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50309985-50310962 transcript_region:SL2.40ch11:50309985..50310962+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMR2_ARATH)"; NbS00040301g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0.71|1|1|1|7|0|253; (*GB) gi|118572820|sp|Q3HVN1.1|AGUB_SOLTU (e_value=1e-180) RecName: Full=N-carbamoylputrescine amidase;; (*SWP) sp|Q3HVN1|AGUB_SOLTU (e_value=0.0) N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1;; (*TAIR) AT2G27450.2 (e_value=3e-175) | Symbols: NLP1, ATNLP1, CPA | nitrilase-like protein 1 | chr2:11737666-11739577 REVERSE LENGTH=326;; (*ITAG) Solyc11g068540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50313861-50320110 transcript_region:SL2.40ch11:50313861..50320110- go_terms:GO:0006807,GO:0006596 functional_description:"N-carbamoylputrescine amidase (AHRD V1 **-- D3NU88_AZOS1); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase IPR017755 N-carbamoylputrescine amidase "; GO:0006807,GO:0006596 NbS00046407g0007.1 protein AED:0.06 eAED:0.06 QI:654|1|1|1|0.71|0.5|8|316|428; (*GB) gi|225446219|ref|XP_002263443.1| (e_value=0.0) PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82730|MGDG2_ARATH (e_value=0.0) Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=MGD2 PE=1 SV=1;; (*TAIR) AT5G20410.1 (e_value=0.0) | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol synthase 2 | chr5:6896765-6898581 FORWARD LENGTH=468;; (*ITAG) Solyc07g007620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2276431-2280276 transcript_region:SL2.40ch07:2276431..2280276+ go_terms:GO:0035250 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-- C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0035250 NbS00000995g0010.1 protein AED:0.17 eAED:0.19 QI:0|0.5|0|1|1|0.66|3|0|352; (*GB) gi|3023851|sp|P93340.1|GBLP_NICPL (e_value=0.0) RecName: Full=Guanine nucleotide-binding protein subunit beta-like protein;; (*SWP) sp|P93340|GBLP_NICPL (e_value=0.0) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT1G18080.1 (e_value=0.0) | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40 repeat-like superfamily protein | chr1:6222325-6223901 FORWARD LENGTH=327;; (*ITAG) Solyc12g040510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:39489012-39490607 transcript_region:SL2.40ch12:39489012..39490607+ functional_description:"Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-- B6SJ21_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00000995g0008.1 protein AED:0.24 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|96 NbS00043808g0008.1 protein AED:0.10 eAED:0.10 QI:22|1|1|1|1|1|9|502|583; (*GB) gi|225423680|ref|XP_002276547.1| (e_value=0.0) PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q56XV8|CPNA2_ARATH (e_value=0.0) Chaperonin 60 subunit alpha 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60A2 PE=2 SV=1;; (*TAIR) AT5G18820.1 (e_value=0.0) | Symbols: EMB3007 | TCP-1/cpn60 chaperonin family protein | chr5:6271549-6274153 FORWARD LENGTH=575;; (*ITAG) Solyc02g068730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33243641-33248793 transcript_region:SL2.40ch02:33243641..33248793- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00043808g0005.1 protein AED:0.28 eAED:0.28 QI:281|1|0.33|1|1|1|3|0|154; (*GB) gi|225423730|ref|XP_002278252.1| (e_value=2e-85) PREDICTED: glycine cleavage system H protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q39732|GCSH_FLAAN (e_value=1e-65) Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1;; (*TAIR) AT2G35120.1 (e_value=4e-78) | Symbols: | Single hybrid motif superfamily protein | chr2:14805913-14807274 REVERSE LENGTH=156;; (*ITAG) Solyc02g068740.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:33249523-33253471 transcript_region:SL2.40ch02:33249523..33253471- go_terms:GO:0019464,GO:0005960 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 ***- B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0019464,GO:0005960 NbS00011642g0012.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|1|1|6|277|228; (*GB) gi|255544950|ref|XP_002513536.1| (e_value=3e-109) ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis];; (*SWP) sp|Q9LJZ5|UBC19_ARATH (e_value=1e-99) Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1;; (*TAIR) AT3G20060.1 (e_value=9e-101) | Symbols: UBC19 | ubiquitin-conjugating enzyme19 | chr3:7002927-7004283 REVERSE LENGTH=181;; (*ITAG) Solyc11g065190.1.1 (e_value=4e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47601564-47603523 transcript_region:SL2.40ch11:47601564..47603523- go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 ***- C1IJE7_9CNID); contains Interpro domain(s) IPR015582 Ubiquitin-conjugating enzyme E2 H10 "; GO:0016567,GO:0043687 NbS00011642g0013.1 protein AED:0.05 eAED:0.05 QI:42|1|1|1|0.83|1|7|375|387; (*GB) gi|225436571|ref|XP_002278600.1| (e_value=5e-152) PREDICTED: uncharacterized protein LOC100244787 [Vitis vinifera];; (*SWP) sp|Q24K03|THUM1_BOVIN (e_value=9e-25) THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1;; (*TAIR) AT5G12410.1 (e_value=5e-141) | Symbols: | THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376;; (*ITAG) Solyc11g065180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47592132-47599568 transcript_region:SL2.40ch11:47592132..47599568+ functional_description:"THUMP domain-containing protein (AHRD V1 ***- D7M518_ARALY); contains Interpro domain(s) IPR004114 THUMP "; NbS00011642g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.72|1|1|1|11|601|1860; (*GB) gi|296083821|emb|CBI24209.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12400.1 (e_value=0.0) | Symbols: | DNA binding;zinc ion binding;DNA binding | chr5:4013813-4021018 FORWARD LENGTH=1602;; (*ITAG) Solyc11g065140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47566526-47569626 transcript_region:SL2.40ch11:47566526..47569626+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--- Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00031396g0004.1 protein AED:0.37 eAED:0.37 QI:191|0.5|0.33|0.66|1|1|3|0|213; (*GB) gi|156070778|gb|ABU45191.1| (e_value=2e-103) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q1H5C9|OP24A_ARATH (e_value=8e-77) Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana GN=OEP24A PE=1 SV=1;; (*TAIR) AT1G45170.1 (e_value=6e-78) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=213;; (*ITAG) Solyc04g080190.2.1 (e_value=9e-76) genomic_reference:SL2.40ch04 gene_region:62042172-62045855 transcript_region:SL2.40ch04:62042172..62045855- functional_description:"Pore protein of (OEP24) (AHRD V1 **-- O49929_PEA)"; NbS00019896g0001.1 protein AED:0.33 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|359476692|ref|XP_002266577.2| (e_value=1e-87) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=4e-49) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT2G18350.1 (e_value=2e-67) | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24 | chr2:7971122-7971910 REVERSE LENGTH=262;; (*ITAG) Solyc02g085160.1.1 (e_value=1e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42719425-42720306 transcript_region:SL2.40ch02:42719425..42720306- go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbS00019896g0008.1 protein AED:0.05 eAED:0.05 QI:98|0|1|1|0|1|2|437|91 NbS00045385g0005.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.66|1|0|0.33|3|1005|372; (*GB) gi|359497147|ref|XP_003635437.1| (e_value=4e-177) PREDICTED: putative glycerol-3-phosphate transporter 4-like, partial [Vitis vinifera];; (*SWP) sp|O23596|GLPT4_ARATH (e_value=6e-162) Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=2 SV=2;; (*TAIR) AT4G17550.1 (e_value=5e-163) | Symbols: | Major facilitator superfamily protein | chr4:9777938-9779738 REVERSE LENGTH=544;; (*ITAG) Solyc06g060910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35296101-35300540 transcript_region:SL2.40ch06:35296101..35300540- go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** B0SG38_LEPBA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00045385g0002.1 protein AED:0.09 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|306; (*ITAG) Solyc08g077950.1.1 (e_value=2e-34) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:59006972-59008069 transcript_region:SL2.40ch08:59006972..59008069+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045385g0013.1 protein AED:0.27 eAED:0.27 QI:139|1|0.87|1|1|1|8|0|540; (*GB) gi|118486445|gb|ABK95062.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8W4H1|GAT26_ARATH (e_value=2e-146) GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1;; (*TAIR) AT4G17570.3 (e_value=3e-152) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514;; (*ITAG) Solyc06g060940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35317423-35324369 transcript_region:SL2.40ch06:35317423..35324369+ go_terms:GO:0006355 functional_description:"GATA transcription factor 29 (AHRD V1 *-*- B4FZE9_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00045385g0014.1 protein AED:0.41 eAED:0.41 QI:0|1|1|1|1|1|3|377|145; (*GB) gi|255581988|ref|XP_002531792.1| (e_value=3e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17010.1 (e_value=4e-54) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9576442-9577627 FORWARD LENGTH=160;; (*ITAG) Solyc06g060920.2.1 (e_value=1e-73) genomic_reference:SL2.40ch06 gene_region:35306623-35311105 transcript_region:SL2.40ch06:35306623..35311105+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040226g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|471; (*GB) gi|225454340|ref|XP_002275824.1| (e_value=1e-155) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=1e-99) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=1e-94) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=8e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00040883g0005.1 protein AED:0.35 eAED:0.36 QI:0|1|1|1|1|1|4|284|383; (*GB) gi|118489021|gb|ABK96318.1| (e_value=0.0) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|B9H5L9|LIAS_POPTR (e_value=0.0) Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1;; (*TAIR) AT2G20860.1 (e_value=0.0) | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979636-8980983 FORWARD LENGTH=374;; (*ITAG) Solyc07g054540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60156209-60161037 transcript_region:SL2.40ch07:60156209..60161037+ go_terms:GO:0017140 functional_description:"Lipoyl synthase (AHRD V1 **** B8J937_ANAD2); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0017140 NbS00031042g0007.1 protein AED:0.43 eAED:0.45 QI:152|0.85|0.62|1|0.85|0.75|8|0|210; (*GB) gi|4959712|gb|AAD34459.1|AF136010_1 (e_value=4e-129) SPP30 [Solanum chacoense];; (*SWP) sp|Q54YG5|TPPC5_DICDI (e_value=2e-77) Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1;; (*TAIR) AT5G58030.1 (e_value=1e-127) | Symbols: | Transport protein particle (TRAPP) component | chr5:23487021-23488483 REVERSE LENGTH=195;; (*ITAG) Solyc04g015050.2.1 (e_value=1e-131) genomic_reference:SL2.40ch04 gene_region:5249508-5255638 transcript_region:SL2.40ch04:5249508..5255638+ functional_description:"Trafficking protein particle complex subunit 5 (AHRD V1 ***- C1BHU1_ONCMY); contains Interpro domain(s) IPR016696 TRAPP I complex, Trs31 "; NbS00031042g0010.1 protein AED:0.39 eAED:0.39 QI:0|0.71|0.62|1|0.71|0.62|8|268|305; (*GB) gi|357473089|ref|XP_003606829.1| (e_value=6e-100) hypothetical protein MTR_4g068190 [Medicago truncatula];; (*SWP) sp|O22870|FK163_ARATH (e_value=4e-94) Peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-3 PE=1 SV=2;; (*TAIR) AT2G43560.1 (e_value=3e-95) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr2:18073995-18075385 REVERSE LENGTH=223;; (*ITAG) Solyc04g015040.2.1 (e_value=3e-122) genomic_reference:SL2.40ch04 gene_region:5242436-5247624 transcript_region:SL2.40ch04:5242436..5247624- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C1FEU4_9CHLO); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00024660g0006.1 protein AED:0.18 eAED:0.18 QI:138|0.5|0.36|1|0.5|0.63|11|409|611; (*GB) gi|10880466|gb|AAG24263.1|AF106957_1 (e_value=6e-147) dual-specific kinase DSK1 [Nicotiana tabacum];; (*SWP) sp|Q9XI96|PERK7_ARATH (e_value=1e-34) Proline-rich receptor-like protein kinase PERK7 OS=Arabidopsis thaliana GN=PERK7 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=7e-88) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc04g079690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61649472-61653656 transcript_region:SL2.40ch04:61649472..61653656+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase 2 (AHRD V1 *-*- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000204g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|0.66|0|0.66|3|443|124; (*GB) gi|357463087|ref|XP_003601825.1| (e_value=2e-17) Lysine/histidine transporter [Medicago truncatula];; (*SWP) sp|Q9LRB5|LHT2_ARATH (e_value=6e-18) Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1;; (*TAIR) AT1G24400.1 (e_value=4e-19) | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine transporter 2 | chr1:8651563-8653561 REVERSE LENGTH=441;; (*ITAG) Solyc12g027890.1.1 (e_value=1e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:21457850-21458569 transcript_region:SL2.40ch12:21457850..21458569- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9HTB5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00000204g0018.1 protein AED:0.04 eAED:0.04 QI:55|1|1|1|1|1|2|1|87 NbS00000204g0011.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|1|1|6|0|416; (*GB) gi|359474963|ref|XP_002279800.2| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|P27450|CX32_ARATH (e_value=7e-147) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=413;; (*ITAG) Solyc01g112220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90032288-90034776 transcript_region:SL2.40ch01:90032288..90034776- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q5XWQ1_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00000204g0013.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0|2|61|61 NbS00000204g0019.1 protein AED:0.25 eAED:0.27 QI:0|0.81|0.66|1|0.72|0.83|12|0|326; (*GB) gi|18076148|emb|CAC80702.1| (e_value=0.0) N-acetylglucosaminyltransferase I [Nicotiana tabacum];; (*SWP) sp|Q9XGM8|MGAT1_ARATH (e_value=0.0) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Arabidopsis thaliana GN=GNTI PE=1 SV=1;; (*TAIR) AT4G38240.2 (e_value=0.0) | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444;; (*ITAG) Solyc01g112240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90039792-90058786 transcript_region:SL2.40ch01:90039792..90058786- go_terms:GO:0003827,GO:0016262 functional_description:"Alpha-1 3-mannosyl-glycoprotein beta-1 2-N-acetylglucosaminyltransferase (AHRD V1 **** Q9ST97_TOBAC); contains Interpro domain(s) IPR004139 Glycosyl transferase, family 13 "; GO:0003827,GO:0016262 NbS00000204g0015.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|0.66|3|0|71; (*GB) gi|18076146|emb|CAC80701.1| (e_value=1e-40) N-acetylglucosaminaltransferase I [Nicotiana tabacum];; (*SWP) sp|Q9XGM8|MGAT1_ARATH (e_value=6e-26) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Arabidopsis thaliana GN=GNTI PE=1 SV=1;; (*TAIR) AT4G38240.2 (e_value=5e-27) | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444;; (*ITAG) Solyc01g112240.2.1 (e_value=4e-39) genomic_reference:SL2.40ch01 gene_region:90039792-90058786 transcript_region:SL2.40ch01:90039792..90058786- go_terms:GO:0003827,GO:0016262 functional_description:"Alpha-1 3-mannosyl-glycoprotein beta-1 2-N-acetylglucosaminyltransferase (AHRD V1 **** Q9ST97_TOBAC); contains Interpro domain(s) IPR004139 Glycosyl transferase, family 13 "; GO:0003827,GO:0016262 NbS00005491g0022.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0.2|0.8|0.75|0.6|5|0|318; (*GB) gi|133246|sp|P19682.1|ROC3_NICSY (e_value=4e-176) RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP; Flags: Precursor;; (*SWP) sp|P19682|ROC3_NICSY (e_value=1e-177) 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G24770.1 (e_value=3e-96) | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA binding protein | chr4:12766223-12767952 REVERSE LENGTH=329;; (*ITAG) Solyc03g111840.2.1 (e_value=3e-147) genomic_reference:SL2.40ch03 gene_region:56501989-56506255 transcript_region:SL2.40ch03:56501989..56506255- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 **-- PAP1L_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00005491g0018.1 protein AED:0.10 eAED:0.10 QI:61|1|1|1|1|1|7|251|718; (*GB) gi|307101690|gb|ADN32810.1| (e_value=0.0) sieve element occlusion a [Solanum phureja];; (*TAIR) AT3G01680.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740;; (*ITAG) Solyc03g111810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56481370-56484394 transcript_region:SL2.40ch03:56481370..56484394- functional_description:"Sieve element-occluding protein 3 (AHRD V1 **-- B5THF7_MEDTR)"; NbS00005491g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|409|140; (*GB) gi|24421095|dbj|BAC07504.2| (e_value=3e-26) receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=3e-15) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=2e-16) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc03g111800.2.1 (e_value=1e-45) genomic_reference:SL2.40ch03 gene_region:56476473-56478792 transcript_region:SL2.40ch03:56476473..56478792- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00005491g0024.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|1|1|2|0|206; (*GB) gi|24421095|dbj|BAC07504.2| (e_value=3e-99) receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=2e-86) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=1e-87) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc06g071810.1.1 (e_value=5e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40623953-40625830 transcript_region:SL2.40ch06:40623953..40625830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00005491g0026.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|297; (*GB) gi|224121858|ref|XP_002318690.1| (e_value=5e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42539|PIMT_ARATH (e_value=3e-122) Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3;; (*TAIR) AT5G50240.1 (e_value=7e-125) | Symbols: PIMT2, AtPIMT2 | protein-l-isoaspartate methyltransferase 2 | chr5:20451251-20452461 FORWARD LENGTH=309;; (*ITAG) Solyc03g111830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56497562-56502317 transcript_region:SL2.40ch03:56497562..56502317+ go_terms:GO:0004719,GO:0042802 functional_description:"Protein-L-isoaspartate O-methyltransferase (AHRD V1 **** B9I3I9_POPTR); contains Interpro domain(s) IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase "; GO:0004719,GO:0042802 NbS00005491g0027.1 protein AED:0.43 eAED:0.43 QI:86|0.75|0.6|1|0|0|5|2|69; (*GB) gi|297733659|emb|CBI14906.3| (e_value=8e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G78790.1 (e_value=7e-27) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:29623930-29624785 REVERSE LENGTH=104;; (*ITAG) Solyc03g111790.2.1 (e_value=6e-42) genomic_reference:SL2.40ch03 gene_region:56473308-56475421 transcript_region:SL2.40ch03:56473308..56475421+ functional_description:"Centromere protein X (AHRD V1 *-*- CENPX_BOVIN); contains Interpro domain(s) IPR018552 Protein of unknown function DUF2008 "; NbS00012616g0007.1 protein AED:0.00 eAED:0.00 QI:276|0.75|0.8|1|0.75|0.6|5|757|117; (*GB) gi|225468200|ref|XP_002274349.1| (e_value=2e-44) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*TAIR) AT2G22360.1 (e_value=4e-32) | Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD LENGTH=442;; (*ITAG) Solyc03g116790.2.1 (e_value=5e-13) genomic_reference:SL2.40ch03 gene_region:60114726-60125680 transcript_region:SL2.40ch03:60114726..60125680+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00012616g0008.1 protein AED:0.13 eAED:0.13 QI:449|0.66|0.25|1|1|0.75|4|0|178; (*GB) gi|225468200|ref|XP_002274349.1| (e_value=6e-67) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=3e-36) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT2G22360.1 (e_value=7e-67) | Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD LENGTH=442;; (*ITAG) Solyc01g105340.2.1 (e_value=6e-78) genomic_reference:SL2.40ch01 gene_region:85301588-85307119 transcript_region:SL2.40ch01:85301588..85307119+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00030037g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|1|1|5|480|230; (*GB) gi|297742436|emb|CBI34585.3| (e_value=4e-106) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=7e-83) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT3G50790.1 (e_value=1e-97) | Symbols: | esterase/lipase/thioesterase family protein | chr3:18880074-18881940 REVERSE LENGTH=408;; (*ITAG) Solyc08g083140.2.1 (e_value=2e-124) genomic_reference:SL2.40ch08 gene_region:62847856-62854865 transcript_region:SL2.40ch08:62847856..62854865+ go_terms:GO:0042802 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA); contains Interpro domain(s) IPR012020 AB-hydrolase YheT, putative "; GO:0042802 NbS00040388g0006.1 protein AED:0.33 eAED:0.40 QI:0|1|0|1|0.66|0.75|4|0|223; (*GB) gi|224089390|ref|XP_002308714.1| (e_value=8e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R7X2|SR140_PONAB (e_value=6e-17) U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii GN=U2SURP PE=2 SV=1;; (*TAIR) AT5G10800.1 (e_value=2e-68) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:3412898-3418382 REVERSE LENGTH=947;; (*ITAG) Solyc03g025280.2.1 (e_value=6e-75) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00040388g0008.1 protein AED:0.48 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|120; (*GB) gi|224089390|ref|XP_002308714.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25060.1 (e_value=3e-19) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=9e-23) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00040388g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.66|0|0|3|0|101; (*GB) gi|224089390|ref|XP_002308714.1| (e_value=6e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g025280.2.1 (e_value=6e-20) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00016360g0010.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0.5|0.2|5|0|758; (*GB) gi|356572078|ref|XP_003554197.1| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max];; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61028914-61031238 transcript_region:SL2.40ch10:61028914..61031238- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00027137g0008.1 protein AED:0.13 eAED:0.13 QI:247|0.9|0.90|1|0.9|0.90|11|276|423; (*GB) gi|350537521|ref|NP_001233786.1| (e_value=0.0) cyclin B2 [Solanum lycopersicum];; (*SWP) sp|P46277|CCNB1_MEDSV (e_value=0.0) G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1;; (*TAIR) AT1G20610.1 (e_value=9e-171) | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429;; (*ITAG) Solyc03g032190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00027137g0007.1 protein AED:0.19 eAED:0.19 QI:223|1|1|1|0.69|0.85|14|390|745; (*GB) gi|255561389|ref|XP_002521705.1| (e_value=0.0) poly(A) polymerase, putative [Ricinus communis];; (*SWP) sp|P44439|PCNB_HAEIN (e_value=2e-28) Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1;; (*TAIR) AT2G17580.1 (e_value=6e-157) | Symbols: | Polynucleotide adenylyltransferase family protein | chr2:7646507-7650066 FORWARD LENGTH=757;; (*ITAG) Solyc03g032180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8959321-8968406 transcript_region:SL2.40ch03:8959321..8968406+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAES); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00027137g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|110; (*GB) gi|297744491|emb|CBI37753.3| (e_value=9e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G17200.1 (e_value=2e-20) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc03g032160.2.1 (e_value=8e-28) genomic_reference:SL2.40ch03 gene_region:8939357-8949528 transcript_region:SL2.40ch03:8939357..8949528- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00003428g0005.1 protein AED:0.39 eAED:0.46 QI:0|0.14|0|0.87|0.85|1|8|0|321; (*GB) gi|297740400|emb|CBI30582.3| (e_value=1e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02520.1 (e_value=1e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: SANT associated (InterPro:IPR015216); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT1G58210.1); Has 842 Blast hits to 736 proteins in 154 species: Archae - 2; Bacteria - 99; Metazoa - 236; Fungi - 52; Plants - 90; Viruses - 0; Other Eukaryotes - 363 (source: NCBI BLink). | chr5:561325-563840 FORWARD LENGTH=598;; (*ITAG) Solyc09g010550.2.1 (e_value=4e-73) genomic_reference:SL2.40ch09 gene_region:3916736-3919570 transcript_region:SL2.40ch09:3916736..3919570- functional_description:"Chromosome 14 open reading frame 106 isoform CRA_b (AHRD V1 *--- D3DSA7_HUMAN); contains Interpro domain(s) IPR015216 SANT associated "; NbS00003428g0008.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0|4|0|236; (*GB) gi|255573653|ref|XP_002527749.1| (e_value=6e-68) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9M353|CHX20_ARATH (e_value=3e-59) Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1;; (*TAIR) AT3G53720.1 (e_value=2e-60) | Symbols: ATCHX20, CHX20 | cation/H+ exchanger 20 | chr3:19905826-19910027 REVERSE LENGTH=842;; (*ITAG) Solyc09g010530.2.1 (e_value=4e-76) genomic_reference:SL2.40ch09 gene_region:3902289-3907675 transcript_region:SL2.40ch09:3902289..3907675- go_terms:GO:0015385 functional_description:"Cation/H+ antiporter (AHRD V1 **** D1JSI8_9BACE); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00015403g0007.1 protein AED:0.24 eAED:0.24 QI:384|0.83|0.85|1|0.83|0.85|7|384|181; (*GB) gi|158325159|gb|ABW34717.1| (e_value=4e-119) acireductone dioxygenase [Solanum tuberosum];; (*SWP) sp|F6HDT7|MTND2_VITVI (e_value=1e-117) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera GN=VIT_05s0020g04080 PE=3 SV=1;; (*TAIR) AT4G14710.2 (e_value=6e-113) | Symbols: ATARD2 | RmlC-like cupins superfamily protein | chr4:8424897-8426360 REVERSE LENGTH=199;; (*ITAG) Solyc09g082650.2.1 (e_value=6e-89) genomic_reference:SL2.40ch09 gene_region:63765012-63769755 transcript_region:SL2.40ch09:63765012..63769755+ go_terms:GO:0010309 functional_description:"Acireductone dioxygenase (AHRD V1 **** A8UGP3_SOLTU); contains Interpro domain(s) IPR004313 Acireductone dioxygenase, ARD "; GO:0010309 NbS00036434g0014.1 protein AED:0.21 eAED:0.22 QI:0|0.5|0.33|1|0|0.66|3|0|319; (*GB) gi|359479713|ref|XP_003632343.1| (e_value=1e-146) PREDICTED: putative nuclease HARBI1-like [Vitis vinifera];; (*SWP) sp|Q6AZB8|HARB1_DANRE (e_value=6e-13) Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1;; (*TAIR) AT3G63270.1 (e_value=7e-135) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23375932-23377398 REVERSE LENGTH=396;; (*ITAG) Solyc06g084150.2.1 (e_value=3e-143) genomic_reference:SL2.40ch06 gene_region:45660099-45662380 transcript_region:SL2.40ch06:45660099..45662380- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00036434g0012.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0.38|1|0.5|0.53|13|0|550; (*GB) gi|296085238|emb|CBI28733.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=0.0) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=0.0) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc06g084140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45654970-45659056 transcript_region:SL2.40ch06:45654970..45659056+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 1 (AHRD V1 **** SUT1_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00036434g0002.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|1|1|2|0|135 NbS00036434g0013.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|224062361|ref|XP_002300822.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G63270.1 (e_value=3e-25) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23375932-23377398 REVERSE LENGTH=396;; (*ITAG) Solyc06g084150.2.1 (e_value=4e-43) genomic_reference:SL2.40ch06 gene_region:45660099-45662380 transcript_region:SL2.40ch06:45660099..45662380- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00043694g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|54261825|gb|AAV31175.1| (e_value=3e-30) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=2e-20) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc04g015220.2.1 (e_value=4e-30) genomic_reference:SL2.40ch04 gene_region:5406762-5409516 transcript_region:SL2.40ch04:5406762..5409516- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00040042g0006.1 protein AED:0.19 eAED:0.35 QI:0|0|0|0.6|0.5|0.6|5|0|351; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-42) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g016610.1.1 (e_value=4e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7903101-7906221 transcript_region:SL2.40ch08:7903101..7906221- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00023218g0010.1 protein AED:0.02 eAED:0.02 QI:347|0.66|0.5|1|0.66|0.5|4|252|568; (*GB) gi|147770644|emb|CAN73410.1| (e_value=2e-176) hypothetical protein VITISV_024375 [Vitis vinifera];; (*SWP) sp|Q9LZM8|BLH9_ARATH (e_value=7e-74) BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1;; (*TAIR) AT5G02030.1 (e_value=5e-75) | Symbols: LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | POX (plant homeobox) family protein | chr5:395754-398872 FORWARD LENGTH=575;; (*ITAG) Solyc09g011380.2.1 (e_value=3e-117) genomic_reference:SL2.40ch09 gene_region:4709685-4715117 transcript_region:SL2.40ch09:4709685..4715117- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 9 (AHRD V1 *--- BLH9_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00023218g0009.1 protein AED:0.02 eAED:0.02 QI:666|1|1|1|1|1|3|287|150; (*GB) gi|225440474|ref|XP_002272505.1| (e_value=9e-71) PREDICTED: CASP-like protein At3g53850 [Vitis vinifera];; (*SWP) sp|Q945M8|CSPLI_ARATH (e_value=1e-60) CASP-like protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1;; (*TAIR) AT3G53850.1 (e_value=8e-62) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:19948262-19948994 REVERSE LENGTH=154;; (*ITAG) Solyc09g011230.2.1 (e_value=7e-79) genomic_reference:SL2.40ch09 gene_region:4562138-4566157 transcript_region:SL2.40ch09:4562138..4566157- functional_description:"UPF0497 membrane protein At3g53850 (AHRD V1 ***- U497L_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00023218g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|359481744|ref|XP_003632668.1| (e_value=4e-28) PREDICTED: uncharacterized protein LOC100261261 [Vitis vinifera];; (*ITAG) Solyc10g086630.1.1 (e_value=3e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:64727768-64728019 transcript_region:SL2.40ch10:64727768..64728019+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053942g0007.1 protein AED:0.22 eAED:0.30 QI:0|0.2|0|1|0.4|0.33|6|0|460; (*GB) gi|255579013|ref|XP_002530358.1| (e_value=2e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g098450.2.1 (e_value=3e-124) genomic_reference:SL2.40ch01 gene_region:80732427-80735316 transcript_region:SL2.40ch01:80732427..80735316+ functional_description:"Genomic DNA chromosome 3 P1 clone MYF24 (AHRD V1 ***- Q9LS59_ARATH)"; NbS00000588g0507.1 protein AED:0.18 eAED:0.19 QI:186|0.56|0.58|1|0.56|0.58|17|268|1206 NbS00023969g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|299; (*GB) gi|225443568|ref|XP_002278092.1| (e_value=3e-116) PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84KK5|D7OMT_GLYEC (e_value=2e-84) Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=7e-40) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc02g077520.2.1 (e_value=2e-162) genomic_reference:SL2.40ch02 gene_region:36995587-36997979 transcript_region:SL2.40ch02:36995587..36997979+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HK00_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00023969g0004.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|107 NbC25904295g0005.1 protein AED:0.37 eAED:0.55 QI:217|0|0.66|1|1|1|3|0|33 NbC25904295g0003.1 protein AED:0.13 eAED:0.16 QI:7|-1|0|1|-1|0|1|0|57; (*GB) gi|2497901|sp|Q40396.1|MT2_NICGU (e_value=2e-29) RecName: Full=Metallothionein-like protein type 2;; (*SWP) sp|Q40396|MT2_NICGU (e_value=5e-31) Metallothionein-like protein type 2 OS=Nicotiana glutinosa PE=3 SV=1;; (*TAIR) AT5G02380.1 (e_value=2e-14) | Symbols: MT2B | metallothionein 2B | chr5:506755-507164 REVERSE LENGTH=77;; (*ITAG) Solyc09g010800.2.1 (e_value=1e-27) genomic_reference:SL2.40ch09 gene_region:4094901-4096611 transcript_region:SL2.40ch09:4094901..4096611+ go_terms:GO:0046872 functional_description:"Type 2 metallothionein (AHRD V1 ***- B3VKV4_SOLNI); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0046872 NbS00051905g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.37|1|0.85|0.75|8|0|1384; (*GB) gi|225459354|ref|XP_002284214.1| (e_value=0.0) PREDICTED: uncharacterized ATP-dependent helicase C29A10.10c-like [Vitis vinifera];; (*SWP) sp|Q00416|SEN1_YEAST (e_value=1e-78) Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN1 PE=1 SV=2;; (*TAIR) AT4G30100.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:14714191-14719335 FORWARD LENGTH=1311;; (*ITAG) Solyc04g072830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57381284-57385016 transcript_region:SL2.40ch04:57381284..57385016- functional_description:"Helicase sen1 (AHRD V1 *--- B6K5E8_SCHJY)"; NbS00060794g0001.1 protein AED:0.00 eAED:0.00 QI:27|1|1|1|1|1|2|393|332; (*GB) gi|289466351|gb|ADC94861.1| (e_value=3e-107) HSP transcription factor [Vitis pseudoreticulata];; (*SWP) sp|Q9T0D3|HFB2B_ARATH (e_value=1e-81) Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1;; (*TAIR) AT4G11660.1 (e_value=9e-83) | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding transcription factor family protein | chr4:7043006-7044227 FORWARD LENGTH=377;; (*ITAG) Solyc08g080540.2.1 (e_value=3e-131) genomic_reference:SL2.40ch08 gene_region:60985869-60987278 transcript_region:SL2.40ch08:60985869..60987278- go_terms:GO:0003677,GO:0016564 functional_description:"Heat stress transcription factor (AHRD V1 *-** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677,GO:0016564 NbC25916617g0003.1 protein AED:0.72 eAED:0.72 QI:0|0.5|0|0.66|1|1|3|0|122; (*GB) gi|296085856|emb|CBI31180.3| (e_value=3e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G65180.1 (e_value=3e-22) | Symbols: | ENTH/VHS family protein | chr5:26045625-26047806 FORWARD LENGTH=439;; (*ITAG) Solyc11g012740.1.1 (e_value=8e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5494026-5508912 transcript_region:SL2.40ch11:5494026..5508912- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00053993g0003.1 protein AED:0.21 eAED:0.21 QI:102|1|0.4|1|0.75|0.6|5|0|406; (*GB) gi|296084325|emb|CBI24713.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SYL0|BT3_ARATH (e_value=2e-134) BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana GN=BT3 PE=1 SV=2;; (*TAIR) AT1G05690.1 (e_value=2e-135) | Symbols: BT3 | BTB and TAZ domain protein 3 | chr1:1707809-1709132 FORWARD LENGTH=364;; (*ITAG) Solyc08g014440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4386003-4388880 transcript_region:SL2.40ch08:4386003..4388880- go_terms:GO:0030528,GO:0005515 functional_description:"CREB-binding protein (Fragment) (AHRD V1 *--* Q8QZV8_MOUSE); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00012104g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|0.5|0.33|3|0|223; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=8e-76) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=1e-50) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=9e-52) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00012104g0006.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|4|0|136; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=4e-41) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=2e-32) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=1e-33) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=7e-44) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00018712g0010.1 protein AED:0.23 eAED:0.24 QI:61|0.5|0.55|1|0.5|0.66|9|609|333; (*GB) gi|224072665|ref|XP_002303829.1| (e_value=3e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LBL5|PRT1_ARATH (e_value=1e-55) E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2;; (*TAIR) AT3G24800.1 (e_value=9e-57) | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410;; (*ITAG) Solyc09g091790.2.1 (e_value=1e-150) genomic_reference:SL2.40ch09 gene_region:66354922-66361692 transcript_region:SL2.40ch09:66354922..66361692- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase PRT1 (AHRD V1 **-* PRT1_ARATH); contains Interpro domain(s) IPR000433 Zinc finger, ZZ-type "; GO:0004842 NbS00018712g0003.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|2|0|171; (*GB) gi|356524509|ref|XP_003530871.1| (e_value=3e-25) PREDICTED: E3 ubiquitin-protein ligase PRT1-like [Glycine max];; (*SWP) sp|Q8LBL5|PRT1_ARATH (e_value=9e-20) E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2;; (*TAIR) AT3G24800.1 (e_value=7e-21) | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410;; (*ITAG) Solyc09g091790.2.1 (e_value=2e-53) genomic_reference:SL2.40ch09 gene_region:66354922-66361692 transcript_region:SL2.40ch09:66354922..66361692- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase PRT1 (AHRD V1 **-* PRT1_ARATH); contains Interpro domain(s) IPR000433 Zinc finger, ZZ-type "; GO:0004842 NbS00001101g0014.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|253; (*GB) gi|225449156|ref|XP_002278214.1| (e_value=2e-88) PREDICTED: uncharacterized protein LOC100263359 [Vitis vinifera];; (*TAIR) AT2G35820.1 (e_value=1e-78) | Symbols: | ureidoglycolate hydrolases | chr2:15050933-15052004 FORWARD LENGTH=192;; (*ITAG) Solyc10g005830.2.1 (e_value=1e-126) genomic_reference:SL2.40ch10 gene_region:646209-647697 transcript_region:SL2.40ch10:646209..647697+ functional_description:"Homoserine dehydrogenase-like (AHRD V1 ***- Q5QLC2_ORYSJ)"; NbS00001101g0015.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|0|0|2|0|115; (*GB) gi|255565822|ref|XP_002523900.1| (e_value=4e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51960.1 (e_value=4e-45) | Symbols: | CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:21110716-21111116 FORWARD LENGTH=103;; (*ITAG) Solyc07g065720.2.1 (e_value=1e-67) genomic_reference:SL2.40ch07 gene_region:64613833-64616777 transcript_region:SL2.40ch07:64613833..64616777- functional_description:"Os11g0133900 protein (Fragment) (AHRD V1 ***- Q0IUU7_ORYSJ); contains Interpro domain(s) IPR018471 ATP synthase assembly factor FMC1, mitochondrial "; NbS00002651g0004.1 protein AED:0.38 eAED:0.38 QI:106|0.75|0.8|1|1|1|5|0|154; (*GB) gi|3024020|sp|P56335.1|IF5A3_SOLTU (e_value=1e-107) RecName: Full=Eukaryotic translation initiation factor 5A-3; Short=eIF-5A-3; AltName: Full=eIF-4D;; (*SWP) sp|P56335|IF5A3_SOLTU (e_value=3e-109) Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1;; (*TAIR) AT1G13950.1 (e_value=6e-97) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc07g005560.2.1 (e_value=2e-109) genomic_reference:SL2.40ch07 gene_region:446870-450798 transcript_region:SL2.40ch07:446870..450798+ go_terms:GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 ***- D6N3G5_GOSHI); contains Interpro domain(s) IPR019769 Translation elongation factor, IF5A, hypusine site "; GO:0047485 NbS00037939g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0|0.75|0|0|4|0|224; (*GB) gi|350538339|ref|NP_001234082.1| (e_value=3e-74) uncharacterized protein LOC543813 [Solanum lycopersicum];; (*SWP) sp|P32110|GSTX6_SOYBN (e_value=5e-51) Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=5e-47) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc01g086680.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:73403385-73405242 transcript_region:SL2.40ch01:73403385..73405242+ functional_description:"Glutathione S-transferase (AHRD V1 ***- D8UY87_GLYSO); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00037939g0010.1 protein AED:0.06 eAED:0.06 QI:148|1|1|1|0.84|0.71|14|171|663; (*GB) gi|359487344|ref|XP_002263663.2| (e_value=0.0) PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ19|SCC13_ARATH (e_value=2e-102) Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2;; (*TAIR) AT3G59550.1 (e_value=1e-103) | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693;; (*ITAG) Solyc01g086690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73405126-73411225 transcript_region:SL2.40ch01:73405126..73411225- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00037939g0008.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|63; (*SWP) sp|Q68RU4|YCF2_PANGI (e_value=7e-20) Protein ycf2 OS=Panax ginseng GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-12) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc04g050850.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:47873257-47873713 transcript_region:SL2.40ch04:47873257..47873713- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- A6Y9V5_CERJA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00006711g0012.1 protein AED:0.19 eAED:0.19 QI:781|0.81|0.88|1|0.81|0.82|17|1918|692; (*GB) gi|385203117|gb|ADO34790.3| (e_value=0.0) beta-galactosidase STBG5 [Solanum lycopersicum];; (*SWP) sp|Q9SCV4|BGAL8_ARATH (e_value=0.0) Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2;; (*TAIR) AT2G28470.1 (e_value=0.0) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173164 REVERSE LENGTH=852;; (*ITAG) Solyc11g069270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50983703-50990234 transcript_region:SL2.40ch11:50983703..50990234+ go_terms:GO:0005529,GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9LLT0_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005529,GO:0005975 NbS00006711g0013.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|333; (*GB) gi|388491458|gb|AFK33795.1| (e_value=1e-145) unknown [Lotus japonicus];; (*TAIR) AT5G60520.1 (e_value=1e-140) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:24331787-24332947 REVERSE LENGTH=338;; (*ITAG) Solyc11g069280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50990674-50992158 transcript_region:SL2.40ch11:50990674..50992158- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 *-*- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00006711g0014.1 protein AED:0.25 eAED:0.25 QI:191|1|1|1|0.83|0.71|7|316|251; (*GB) gi|46399273|gb|AAS92257.1| (e_value=3e-168) putative pyridoxine biosynthesis protein [Nicotiana tabacum];; (*SWP) sp|Q8LAD0|PDX2_ARATH (e_value=3e-122) Pyridoxal biosynthesis protein PDX2 OS=Arabidopsis thaliana GN=PDX2 PE=1 SV=1;; (*TAIR) AT5G60540.1 (e_value=2e-123) | Symbols: EMB2407, ATPDX2, PDX2 | pyridoxine biosynthesis 2 | chr5:24336874-24338647 REVERSE LENGTH=255;; (*ITAG) Solyc11g069290.1.1 (e_value=1e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50995781-51001324 transcript_region:SL2.40ch11:50995781..51001324- functional_description:"Glutamine amidotransferase subunit pdxT (AHRD V1 ***- B6SNW4_MAIZE); contains Interpro domain(s) IPR002161 SNO glutamine amidotransferase "; NbS00054457g0001.1 protein AED:0.38 eAED:0.39 QI:0|0.5|0.33|0.66|1|1|3|0|211; (*GB) gi|359479661|ref|XP_003632323.1| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100852813 [Vitis vinifera];; (*TAIR) AT4G04614.1 (e_value=7e-30) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2327308-2327914 REVERSE LENGTH=176;; (*ITAG) Solyc09g065510.2.1 (e_value=3e-68) genomic_reference:SL2.40ch09 gene_region:59225609-59228175 transcript_region:SL2.40ch09:59225609..59228175+ functional_description:"C1orf52 homolog (AHRD V1 *-*- B5XC77_SALSA)"; NbS00054457g0009.1 protein AED:0.35 eAED:0.35 QI:0|1|0.85|1|0.83|0.85|7|0|342; (*GB) gi|224085515|ref|XP_002307602.1| (e_value=0.0) homocysteine s-methyltransferase [Populus trichocarpa];; (*SWP) sp|Q9M1W4|HMT2_ARATH (e_value=7e-178) Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1;; (*TAIR) AT3G63250.1 (e_value=6e-179) | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase 2 | chr3:23370575-23372587 REVERSE LENGTH=333;; (*ITAG) Solyc09g065520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59228854-59238380 transcript_region:SL2.40ch09:59228854..59238380- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9GSK5_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00061803g0001.1 protein AED:0.32 eAED:0.39 QI:0|0.66|0.6|0.9|1|1|10|0|416; (*GB) gi|78191456|gb|ABB29949.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|Q54KZ8|EIF3M_DICDI (e_value=2e-63) Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1;; (*TAIR) AT5G15610.2 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr5:5079579-5081929 FORWARD LENGTH=413;; (*ITAG) Solyc02g089070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45554788-45559960 transcript_region:SL2.40ch02:45554788..45559960+ functional_description:"Eukaryotic translation initiation factor 3 subunit M (AHRD V1 ***- B2WFL9_PYRTR); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbC23764273g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|3426261|gb|AAC32253.1| (e_value=2e-31) disease resistance gene homolog Mi-copy1 [Solanum lycopersicum];; (*ITAG) Solyc06g008450.2.1 (e_value=5e-33) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00060481g0005.1 protein AED:0.11 eAED:0.12 QI:0|0.81|0.66|1|0.63|0.5|12|0|519; (*GB) gi|224104851|ref|XP_002313591.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=4e-111) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT1G08320.3 (e_value=0.0) | Symbols: TGA9, bZIP21 | bZIP transcription factor family protein | chr1:2622113-2627451 REVERSE LENGTH=481;; (*ITAG) Solyc06g074320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42332448-42338082 transcript_region:SL2.40ch06:42332448..42338082+ go_terms:GO:0005515,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 ***- Q93XM6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003677 NbS00025935g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.33|1|1|3|0|345; (*GB) gi|357454855|ref|XP_003597708.1| (e_value=1e-58) hypothetical protein MTR_2g101430 [Medicago truncatula];; (*TAIR) AT1G51080.1 (e_value=2e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 101 Blast hits to 98 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 10; Plants - 27; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr1:18929883-18930740 REVERSE LENGTH=285;; (*ITAG) Solyc01g102860.2.1 (e_value=6e-88) genomic_reference:SL2.40ch01 gene_region:83303739-83304848 transcript_region:SL2.40ch01:83303739..83304848+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038811g0006.1 protein AED:0.29 eAED:0.29 QI:0|0|0.5|1|1|0.5|2|596|144; (*GB) gi|225458354|ref|XP_002283278.1| (e_value=1e-70) PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-19) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G47740.2 (e_value=2e-52) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:17567903-17569035 FORWARD LENGTH=279;; (*ITAG) Solyc12g089060.1.1 (e_value=5e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62640294-62642250 transcript_region:SL2.40ch12:62640294..62642250- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00038811g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.5|1|1|1|6|0|382; (*GB) gi|224137214|ref|XP_002327070.1| (e_value=2e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7L5N7|PCAT2_HUMAN (e_value=8e-24) Lysophosphatidylcholine acyltransferase 2 OS=Homo sapiens GN=LPCAT2 PE=1 SV=1;; (*TAIR) AT1G80950.1 (e_value=1e-122) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:30412653-30414935 REVERSE LENGTH=398;; (*ITAG) Solyc04g080020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61907518-61914553 transcript_region:SL2.40ch04:61907518..61914553+ go_terms:GO:0008152 functional_description:"Acyltransferase family protein (AHRD V1 ***- Q22SV8_TETTH); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0008152 NbS00029197g0004.1 protein AED:0.21 eAED:0.21 QI:185|1|1|1|0.75|0.76|13|385|520; (*GB) gi|225435336|ref|XP_002285216.1| (e_value=0.0) PREDICTED: protein-tyrosine sulfotransferase [Vitis vinifera];; (*SWP) sp|Q3EDG5|TPST_ARATH (e_value=0.0) Protein-tyrosine sulfotransferase OS=Arabidopsis thaliana GN=TPST PE=1 SV=3;; (*TAIR) AT1G08030.1 (e_value=0.0) | Symbols: TPST | tyrosylprotein sulfotransferase | chr1:2489575-2492741 REVERSE LENGTH=500;; (*ITAG) Solyc11g069520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51214912-51221662 transcript_region:SL2.40ch11:51214912..51221662- functional_description:"Protein-tyrosine sulfotransferase (AHRD V1 ***- TPST_ARATH)"; NbS00007121g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0.88|1|0.87|0.77|9|437|393; (*GB) gi|255558462|ref|XP_002520256.1| (e_value=3e-177) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q8VZN9|P2C11_ARATH (e_value=3e-160) Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana GN=At1g43900 PE=2 SV=1;; (*TAIR) AT1G43900.1 (e_value=2e-161) | Symbols: | Protein phosphatase 2C family protein | chr1:16654045-16655810 FORWARD LENGTH=371;; (*ITAG) Solyc04g064500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54767606-54787723 transcript_region:SL2.40ch04:54767606..54787723+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8S8Z0_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00007121g0012.1 protein AED:0.00 eAED:0.00 QI:253|1|1|1|0|1|2|262|534; (*GB) gi|225447266|ref|XP_002279062.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 10 [Vitis vinifera];; (*SWP) sp|Q9SKT6|GAUTA_ARATH (e_value=0.0) Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2;; (*TAIR) AT2G20810.1 (e_value=0.0) | Symbols: GAUT10, LGT4 | galacturonosyltransferase 10 | chr2:8957927-8959610 FORWARD LENGTH=536;; (*ITAG) Solyc04g064490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54752760-54761828 transcript_region:SL2.40ch04:54752760..54761828- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00007121g0104.1 protein AED:0.11 eAED:0.11 QI:253|1|1|1|0.83|0.71|7|376|209 NbS00002488g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|115391890|ref|YP_778478.1| (e_value=1e-23) ATP synthase CF0 A subunit [Jasminum nudiflorum];; (*SWP) sp|Q06RE3|ATPI_JASNU (e_value=3e-25) ATP synthase subunit a, chloroplastic OS=Jasminum nudiflorum GN=atpI PE=3 SV=1;; (*ITAG) ATCG00150.1 (e_value=5e-23) | Symbols: ATPI | ATPase, F0 complex, subunit A protein | chrC:14021-14770 REVERSE LENGTH=249;; (*ITAG) Solyc10g044560.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22280180-22280758 transcript_region:SL2.40ch10:22280180..22280758- go_terms:GO:0046933,GO:0016820 functional_description:"ATP synthase subunit a chloroplastic (AHRD V1 **** D3WAR6_AUCJA); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0046933,GO:0016820 NbS00002488g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|361; (*GB) gi|359484616|ref|XP_002281417.2| (e_value=4e-158) PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VXZ0|NUD20_ARATH (e_value=2e-147) Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1;; (*TAIR) AT5G19460.1 (e_value=1e-148) | Symbols: atnudt20, NUDT20 | nudix hydrolase homolog 20 | chr5:6563112-6565178 FORWARD LENGTH=374;; (*ITAG) Solyc07g009170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4229582-4233274 transcript_region:SL2.40ch07:4229582..4233274- go_terms:GO:0005515,GO:0004788 functional_description:"Nudix hydrolase 24 (AHRD V1 ***- B6TUU0_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0005515,GO:0004788 NbS00002488g0014.1 protein AED:0.23 eAED:0.23 QI:53|1|1|1|0.85|0.87|8|1583|222; (*GB) gi|298204898|emb|CBI34205.3| (e_value=7e-93) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G04890.1 (e_value=1e-73) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr3:1347708-1349066 FORWARD LENGTH=216;; (*ITAG) Solyc01g097820.2.1 (e_value=9e-132) genomic_reference:SL2.40ch01 gene_region:80285056-80289326 transcript_region:SL2.40ch01:80285056..80289326+ functional_description:"SOUL heme-binding protein (AHRD V1 *--- A8JFN5_CHLRE); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00002488g0010.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|347810174|gb|AEP25226.1| (e_value=2e-65) RNA polymerase C2 [Rhabdodendron amazonicum];; (*SWP) sp|P38550|RPOC2_TOBAC (e_value=4e-66) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2;; (*ITAG) ATCG00170.1 (e_value=1e-64) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc08g028940.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21743376-21744423 transcript_region:SL2.40ch08:21743376..21744423- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WCH4_NEROL); contains Interpro domain(s) IPR007083 RNA polymerase Rpb1, domain 4 "; GO:0006350 NbS00002488g0016.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.76|1|0.75|0.76|13|0|464; (*GB) gi|334199824|gb|AEG73891.1| (e_value=0.0) zeta-carotene desaturase [Nicotiana tabacum];; (*SWP) sp|Q9SE20|ZDS_SOLLC (e_value=0.0) Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1;; (*TAIR) AT3G04870.2 (e_value=0.0) | Symbols: ZDS, PDE181, SPC1 | zeta-carotene desaturase | chr3:1342842-1346189 FORWARD LENGTH=558;; (*ITAG) Solyc01g097810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80276527-80284534 transcript_region:SL2.40ch01:80276527..80284534- go_terms:GO:0055114 functional_description:"Zeta-carotene desaturase"; GO:0055114 NbS00002488g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|229; (*GB) gi|224123342|ref|XP_002319055.1| (e_value=2e-58) predicted protein [Populus trichocarpa];; (*TAIR) AT5G28150.1 (e_value=5e-14) | Symbols: | Plant protein of unknown function (DUF868) | chr5:10135826-10136695 FORWARD LENGTH=289;; (*ITAG) Solyc01g097830.2.1 (e_value=4e-84) genomic_reference:SL2.40ch01 gene_region:80289524-80290790 transcript_region:SL2.40ch01:80289524..80290790- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS19_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00029687g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|550; (*GB) gi|359480321|ref|XP_003632432.1| (e_value=0.0) PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=0.0) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT2G20370.1 (e_value=0.0) | Symbols: KAM1, MUR3 | Exostosin family protein | chr2:8792355-8794214 FORWARD LENGTH=619;; (*ITAG) Solyc03g115750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59422877-59424604 transcript_region:SL2.40ch03:59422877..59424604+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00029687g0012.1 protein AED:0.33 eAED:0.39 QI:129|0.6|0.56|0.93|0.73|0.56|16|0|528; (*GB) gi|225437963|ref|XP_002271401.1| (e_value=0.0) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SK66|NDUA9_ARATH (e_value=4e-167) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2 SV=2;; (*TAIR) AT2G20360.1 (e_value=3e-168) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402;; (*ITAG) Solyc09g064450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57326433-57337506 transcript_region:SL2.40ch09:57326433..57337506+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (Ubiquinone) (AHRD V1 **** D7FUY2_ECTSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005515,GO:0008137 NbS00030647g0006.1 protein AED:0.17 eAED:0.17 QI:83|1|1|1|0.91|0.84|13|252|423; (*GB) gi|357485823|ref|XP_003613199.1| (e_value=0.0) ATP-citrate synthase [Medicago truncatula];; (*SWP) sp|O22718|ACLA2_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1;; (*TAIR) AT1G60810.1 (e_value=0.0) | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388691-22390993 REVERSE LENGTH=423;; (*ITAG) Solyc05g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:141208-145022 transcript_region:SL2.40ch05:141208..145022- go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-2 (AHRD V1 **** D7KWP3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00014911g0002.1 protein AED:0.24 eAED:0.33 QI:0|0|0|1|1|1|2|0|124; (*GB) gi|225430575|ref|XP_002263122.1| (e_value=3e-18) PREDICTED: uncharacterized protein LOC100263835 [Vitis vinifera];; (*ITAG) Solyc08g006520.1.1 (e_value=6e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1130492-1131028 transcript_region:SL2.40ch08:1130492..1131028- functional_description:"GDU1 (AHRD V1 *-*- B6TNE4_MAIZE)"; NbS00036208g0007.1 protein AED:0.34 eAED:0.46 QI:159|0|0.66|1|1|1|3|131|68 NbS00036208g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|452; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=0.0) malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZWR8|ANTA_GENTR (e_value=4e-114) Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT1G03940.1 (e_value=6e-75) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:1009542-1010951 REVERSE LENGTH=469;; (*ITAG) Solyc10g008680.1.1 (e_value=4e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00036208g0008.1 protein AED:0.03 eAED:0.03 QI:77|1|0.66|1|0.5|0.66|3|0|317; (*GB) gi|255553923|ref|XP_002518002.1| (e_value=2e-103) r2r3-myb transcription factor, putative [Ricinus communis];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=2e-68) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=2e-90) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc10g008700.1.1 (e_value=3e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2769233-2770973 transcript_region:SL2.40ch10:2769233..2770973+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9M0J5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00004910g0006.1 protein AED:0.31 eAED:0.31 QI:145|1|0.75|1|1|1|4|0|245; (*GB) gi|170388|gb|AAA34140.1| (e_value=2e-169) chlorophyll a/b-binding protein [Solanum lycopersicum];; (*SWP) sp|P12360|CB11_SOLLC (e_value=3e-166) Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1;; (*TAIR) AT3G54890.1 (e_value=3e-149) | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241;; (*ITAG) Solyc05g056070.2.1 (e_value=3e-172) genomic_reference:SL2.40ch05 gene_region:64606977-64608378 transcript_region:SL2.40ch05:64606977..64608378+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 ***- CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00004910g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|5|0|184; (*GB) gi|24785191|dbj|BAC23059.1| (e_value=3e-71) hypothetical protein [Nicotiana tabacum];; (*ITAG) Solyc05g056040.2.1 (e_value=4e-46) genomic_reference:SL2.40ch05 gene_region:64568906-64574482 transcript_region:SL2.40ch05:64568906..64574482- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 14 (AHRD V1 *-*- D9HNU1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005634,GO:0006355 NbS00018915g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|3|0|564; (*GB) gi|27529844|dbj|BAC53937.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=7e-169) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=5e-170) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2271065-2273350 transcript_region:SL2.40ch02:2271065..2273350- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00018915g0014.1 protein AED:0.26 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|402; (*GB) gi|359492453|ref|XP_002284086.2| (e_value=2e-171) PREDICTED: serine/threonine-protein phosphatase 2A activator-like [Vitis vinifera];; (*SWP) sp|Q2KJ44|PTPA_BOVIN (e_value=3e-95) Serine/threonine-protein phosphatase 2A activator OS=Bos taurus GN=PPP2R4 PE=2 SV=1;; (*TAIR) AT4G08960.1 (e_value=6e-171) | Symbols: | phosphotyrosyl phosphatase activator (PTPA) family protein | chr4:5746326-5747994 FORWARD LENGTH=392;; (*ITAG) Solyc01g008280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2391529-2395313 transcript_region:SL2.40ch01:2391529..2395313+ go_terms:GO:0008601 functional_description:"Serine/threonine-protein phosphatase 2A activator 2 (AHRD V1 **** B6TQY2_MAIZE); contains Interpro domain(s) IPR004327 Phosphotyrosyl phosphatase activator, PTPA "; GO:0008601 NbS00018915g0015.1 protein AED:0.36 eAED:0.36 QI:27|0.5|0.33|0.66|0.5|0.33|3|0|189; (*GB) gi|297852732|ref|XP_002894247.1| (e_value=2e-62) hypothetical protein ARALYDRAFT_891962 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8LD49|TRXX_ARATH (e_value=7e-62) Thioredoxin X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2;; (*TAIR) AT1G50320.1 (e_value=5e-63) | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18638606-18639464 REVERSE LENGTH=182;; (*ITAG) Solyc01g008250.2.1 (e_value=8e-83) genomic_reference:SL2.40ch01 gene_region:2375077-2377870 transcript_region:SL2.40ch01:2375077..2377870- go_terms:GO:0045454 functional_description:"Thioredoxin X (AHRD V1 ***- B6T9S0_MAIZE); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00046383g0003.1 protein AED:0.07 eAED:0.07 QI:285|0.94|0.83|1|0.76|0.77|18|364|888; (*GB) gi|225426424|ref|XP_002274169.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256435 [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=1e-136) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G63640.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr1:23589234-23595139 REVERSE LENGTH=1071;; (*ITAG) Solyc06g069130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39297400-39304183 transcript_region:SL2.40ch06:39297400..39304183- go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 ***- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00003059g0002.1 protein AED:0.10 eAED:0.12 QI:680|1|0.5|1|0|0.5|2|0|97; (*GB) gi|224147287|ref|XP_002336447.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28395.4 (e_value=8e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9969817-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc02g077730.2.1 (e_value=2e-29) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003059g0014.1 protein AED:0.29 eAED:0.29 QI:242|0.46|0.31|1|0.46|0.56|16|0|1177; (*GB) gi|297743926|emb|CBI36896.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8IY37|DHX37_HUMAN (e_value=1e-119) Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1;; (*TAIR) AT1G33390.1 (e_value=0.0) | Symbols: ATFAS4, FAS4 | RNA helicase family protein | chr1:12099738-12104108 REVERSE LENGTH=1237;; (*ITAG) Solyc01g095710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78658133-78666458 transcript_region:SL2.40ch01:78658133..78666458+ go_terms:GO:0004004,GO:0005515 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** Q173G5_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004,GO:0005515 NbS00003059g0003.1 protein AED:0.64 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|78 NbS00004476g0007.1 protein AED:0.00 eAED:0.00 QI:51|1|1|1|1|1|3|130|83; (*ITAG) Solyc03g098750.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:54474889-54477037 transcript_region:SL2.40ch03:54474889..54477037- functional_description:"Unknown Protein (AHRD V1)"; NbS00004476g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.92|0.93|0.93|0.78|0.8|15|207|560; (*GB) gi|359491097|ref|XP_003634219.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH79|Y5064_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1;; (*TAIR) AT5G50530.1 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548;; (*ITAG) Solyc12g032930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:21836138-21839862 transcript_region:SL2.40ch12:21836138..21839862+ functional_description:"CBS domain containing protein (AHRD V1 ***- B6U1W0_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00034177g0010.1 protein AED:0.21 eAED:0.24 QI:0|0.54|0.41|1|0.45|0.41|12|0|1607; (*GB) gi|138996985|dbj|BAF52855.1| (e_value=0.0) repressor of silencing 1 [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=2e-76) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT2G36490.1 (e_value=1e-77) | Symbols: DML1, ROS1 | demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393;; (*ITAG) Solyc09g009080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2409822-2419196 transcript_region:SL2.40ch09:2409822..2419196+ go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 1 (AHRD V1 **-- A4PF88_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00034177g0009.1 protein AED:0.43 eAED:0.43 QI:0|0.85|0.75|1|0.42|0.62|8|361|250; (*GB) gi|138996985|dbj|BAF52855.1| (e_value=5e-167) repressor of silencing 1 [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=2e-121) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=1e-121) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc09g009080.2.1 (e_value=3e-154) genomic_reference:SL2.40ch09 gene_region:2409822-2419196 transcript_region:SL2.40ch09:2409822..2419196+ go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 1 (AHRD V1 **-- A4PF88_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00037892g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0.33|0.33|1|1|3|333|185; (*GB) gi|350537915|ref|NP_001234573.1| (e_value=7e-88) translation initiation factor IF-1, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q94KR9|IF1C_SOLLC (e_value=2e-89) Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum GN=infA PE=2 SV=1;; (*TAIR) AT4G11175.1 (e_value=5e-30) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:6818162-6818806 FORWARD LENGTH=141;; (*ITAG) Solyc12g098350.1.1 (e_value=1e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64227351-64227821 transcript_region:SL2.40ch12:64227351..64227821- go_terms:GO:0006413 functional_description:"Translation initiation factor 1 (AHRD V1 *-*- D1M7Q2_PARAR); contains Interpro domain(s) IPR006196 S1, IF1 type "; GO:0006413 NbS00012382g0008.1 protein AED:0.01 eAED:0.01 QI:82|1|1|1|0|0|2|171|346; (*GB) gi|225429983|ref|XP_002281453.1| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100252675 [Vitis vinifera];; (*TAIR) AT5G11550.1 (e_value=3e-51) | Symbols: | ARM repeat superfamily protein | chr5:3708203-3709147 REVERSE LENGTH=314;; (*ITAG) Solyc11g071240.1.1 (e_value=2e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51857580-51859206 transcript_region:SL2.40ch11:51857580..51859206+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein (AHRD V1 *-*- A8IXJ0_BRACM); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00012382g0011.1 protein AED:0.03 eAED:0.03 QI:258|1|1|1|0.66|0.71|7|451|1156; (*GB) gi|224092306|ref|XP_002309551.1| (e_value=3e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYD9|EMF1_ARATH (e_value=6e-12) Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana GN=EMF1 PE=1 SV=1;; (*TAIR) AT5G11530.1 (e_value=4e-13) | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:3697140-3700930 FORWARD LENGTH=1096;; (*ITAG) Solyc11g071250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51865253-51870977 transcript_region:SL2.40ch11:51865253..51870977- functional_description:"EMBYO FLOWERING 1-like protein (Fragment) (AHRD V1 *-*- Q52ZP2_PEA)"; NbS00046151g0001.1 protein AED:0.21 eAED:0.22 QI:0|0|0.5|1|0|0.5|2|948|188; (*GB) gi|225441508|ref|XP_002280441.1| (e_value=1e-98) PREDICTED: transmembrane and coiled-coil domains protein 1 [Vitis vinifera];; (*SWP) sp|Q5I0H4|TMCO1_RAT (e_value=7e-50) Transmembrane and coiled-coil domains protein 1 OS=Rattus norvegicus GN=Tmco1 PE=2 SV=1;; (*TAIR) AT5G06660.1 (e_value=7e-96) | Symbols: | Protein of unknown function DUF106, transmembrane | chr5:2046863-2047453 FORWARD LENGTH=196;; (*ITAG) Solyc10g079000.1.1 (e_value=1e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59971409-59971993 transcript_region:SL2.40ch10:59971409..59971993- functional_description:"Transmembrane and coiled-coil domain-containing protein 1 (AHRD V1 ***- B0WCQ4_CULQU); contains Interpro domain(s) IPR008559 Protein of unknown function DUF841, eukaryotic "; NbS00046151g0008.1 protein AED:0.33 eAED:0.33 QI:565|0.95|0.88|0.96|0.66|0.68|25|0|871; (*GB) gi|255579037|ref|XP_002530370.1| (e_value=0.0) kinesin heavy chain, putative [Ricinus communis];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=9e-106) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT3G12020.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3827016-3834146 FORWARD LENGTH=965;; (*ITAG) Solyc03g053080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:20135479-20156077 transcript_region:SL2.40ch03:20135479..20156077+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00018948g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.75|1|0|0.25|4|2368|216; (*GB) gi|145839451|gb|ABP96804.1| (e_value=2e-23) receptor-like protein kinase [Capsicum annuum];; (*ITAG) Solyc05g008990.2.1 (e_value=2e-87) genomic_reference:SL2.40ch05 gene_region:3177653-3180493 transcript_region:SL2.40ch05:3177653..3180493+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018948g0011.1 protein AED:0.28 eAED:0.30 QI:0|0.33|0.30|1|0.83|0.84|13|309|1355; (*GB) gi|297737780|emb|CBI26981.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=5e-123) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G25390.1 (e_value=6e-144) | Symbols: | Protein kinase superfamily protein | chr1:8906640-8908800 REVERSE LENGTH=629;; (*ITAG) Solyc05g008970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3170272-3171857 transcript_region:SL2.40ch05:3170272..3171857+ go_terms:GO:0046982,GO:0004674 functional_description:"Serine/threonine protein kinase family protein (AHRD V1 **** C6ZRM5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0046982,GO:0004674 NbS00018948g0007.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.33|1|1|3|0|63 NbS00037910g0009.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|502|220; (*GB) gi|225466125|ref|XP_002267975.1| (e_value=8e-115) PREDICTED: cell number regulator 6 isoform 1 [Vitis vinifera];; (*SWP) sp|B6SGC5|CNR6_MAIZE (e_value=6e-102) Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1;; (*TAIR) AT5G51400.1 (e_value=2e-93) | Symbols: | PLAC8 family protein | chr5:20878784-20880036 REVERSE LENGTH=241;; (*ITAG) Solyc05g051690.2.1 (e_value=3e-132) genomic_reference:SL2.40ch05 gene_region:61245909-61251364 transcript_region:SL2.40ch05:61245909..61251364- functional_description:"Cell number regulator 6 (AHRD V1 **-- B6SGC5_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00037910g0010.1 protein AED:0.10 eAED:0.10 QI:184|0.92|0.96|1|0.92|0.96|26|348|991; (*GB) gi|225454979|ref|XP_002278113.1| (e_value=0.0) PREDICTED: structural maintenance of chromosomes protein 6-like [Vitis vinifera];; (*SWP) sp|Q924W5|SMC6_MOUSE (e_value=3e-82) Structural maintenance of chromosomes protein 6 OS=Mus musculus GN=Smc6 PE=2 SV=1;; (*TAIR) AT5G61460.1 (e_value=0.0) | Symbols: MIM, ATRAD18, SMC6B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24714551-24721841 REVERSE LENGTH=1057;; (*ITAG) Solyc05g051680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61207858-61233676 transcript_region:SL2.40ch05:61207858..61233676+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes family protein (AHRD V1 ***- D7M0L2_ARALY); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00011120g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|203; (*GB) gi|225461798|ref|XP_002283666.1| (e_value=4e-98) PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera];; (*SWP) sp|Q9SYM2|STHY_ARATH (e_value=1e-79) Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2;; (*TAIR) AT1G78600.2 (e_value=9e-81) | Symbols: LZF1 | light-regulated zinc finger protein 1 | chr1:29567370-29568662 FORWARD LENGTH=319;; (*ITAG) Solyc07g062160.2.1 (e_value=5e-135) genomic_reference:SL2.40ch07 gene_region:62191788-62196800 transcript_region:SL2.40ch07:62191788..62196800+ go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005515,GO:0003700 NbS00014476g0007.1 protein AED:0.23 eAED:0.25 QI:0|0.73|0.62|1|0.73|0.75|16|0|727; (*GB) gi|356495657|ref|XP_003516691.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100813707 [Glycine max];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-77) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G23050.1 (e_value=9e-154) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr4:12080112-12083708 FORWARD LENGTH=735;; (*ITAG) Solyc08g080460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60917452-60922463 transcript_region:SL2.40ch08:60917452..60922463+ go_terms:GO:0005515,GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004712 NbS00024015g0013.1 protein AED:0.08 eAED:0.08 QI:60|0.85|0.80|1|0.8|0.85|21|234|1504; (*GB) gi|26984133|gb|AAN85207.1| (e_value=0.0) DNA topoisomerase II [Nicotiana tabacum];; (*SWP) sp|P30182|TOP2_ARATH (e_value=0.0) DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2;; (*TAIR) AT3G23890.1 (e_value=0.0) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473;; (*ITAG) Solyc01g087500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74205900-74212696 transcript_region:SL2.40ch01:74205900..74212696- go_terms:GO:0003918 functional_description:"DNA topoisomerase 2 (AHRD V1 **** Q8GSC4_TOBAC); contains Interpro domain(s) IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal "; GO:0003918 NbS00024015g0012.1 protein AED:0.15 eAED:0.15 QI:246|0.85|0.75|1|0.71|0.62|8|375|371; (*GB) gi|225450073|ref|XP_002277668.1| (e_value=0.0) PREDICTED: 42 kDa peptidyl-prolyl isomerase isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LDC0|FKB42_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1;; (*TAIR) AT3G21640.1 (e_value=0.0) | Symbols: TWD1, UCU2, FKBP42, ATFKBP42 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:7619025-7621097 REVERSE LENGTH=365;; (*ITAG) Solyc01g087470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74189005-74196057 transcript_region:SL2.40ch01:74189005..74196057+ go_terms:GO:0005516 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *--- A8P033_COPC7); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005516 NbS00024015g0008.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0|1|0.5|0.33|3|0|1175; (*GB) gi|225450071|ref|XP_002274296.1| (e_value=0.0) PREDICTED: protein OBERON 4-like [Vitis vinifera];; (*SWP) sp|Q84TI3|OBE4_ARATH (e_value=0.0) Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2;; (*TAIR) AT3G63500.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1423) | chr3:23446331-23449991 REVERSE LENGTH=1162;; (*ITAG) Solyc01g087490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74201963-74205444 transcript_region:SL2.40ch01:74201963..74205444+ functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; NbS00054597g0007.1 protein AED:0.25 eAED:0.25 QI:204|1|1|1|1|1|4|280|196; (*GB) gi|255558302|ref|XP_002520178.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G69935.1 (e_value=5e-31) | Symbols: SHW1 | short hypocotyl in white light1 | chr1:26342072-26343082 REVERSE LENGTH=192;; (*ITAG) Solyc04g005120.2.1 (e_value=1e-66) genomic_reference:SL2.40ch04 gene_region:85168-88296 transcript_region:SL2.40ch04:85168..88296+ functional_description:"Unknown Protein (AHRD V1)"; NbS00054597g0006.1 protein AED:0.26 eAED:0.26 QI:0|1|0.83|1|1|1|6|271|257; (*GB) gi|33339703|gb|AAQ14331.1|AF283506_1 (e_value=7e-100) MYC1 [Catharanthus roseus];; (*SWP) sp|Q0JXE7|BPE_ARATH (e_value=3e-61) Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1;; (*TAIR) AT1G59640.1 (e_value=5e-85) | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21909464-21911030 REVERSE LENGTH=264;; (*ITAG) Solyc05g006650.2.1 (e_value=7e-122) genomic_reference:SL2.40ch05 gene_region:1311134-1316254 transcript_region:SL2.40ch05:1311134..1316254- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00022957g0001.1 protein AED:0.17 eAED:0.17 QI:63|0.5|0.33|0.66|1|1|3|0|81 NbS00018822g0003.1 protein AED:0.19 eAED:0.19 QI:292|0|0|1|1|1|2|0|230; (*GB) gi|222822685|gb|ACM68455.1| (e_value=3e-80) stress-associated protein 5 [Solanum pennellii];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=7e-63) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=2e-38) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc10g079080.1.1 (e_value=3e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60031853-60032371 transcript_region:SL2.40ch10:60031853..60032371- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00011148g0020.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|0|0.33|3|0|115 NbS00011148g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.87|0.66|1|1|1|9|565|441; (*GB) gi|1345975|sp|P48626.1|FAD3E_TOBAC (e_value=0.0) RecName: Full=Omega-3 fatty acid desaturase, endoplasmic reticulum;; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0.0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1;; (*TAIR) AT2G29980.1 (e_value=1e-149) | Symbols: FAD3 | fatty acid desaturase 3 | chr2:12781787-12784946 REVERSE LENGTH=386;; (*ITAG) Solyc06g007130.2.1 (e_value=3e-177) genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00011148g0017.1 protein AED:0.26 eAED:0.26 QI:23|0.75|0.6|1|1|1|5|0|600; (*GB) gi|350536591|ref|NP_001233998.1| (e_value=0.0) oligopeptide transporter 1 [Solanum lycopersicum];; (*SWP) sp|P46032|PTR2_ARATH (e_value=0.0) Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1;; (*TAIR) AT2G02040.1 (e_value=0.0) | Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 | peptide transporter 2 | chr2:487542-489707 FORWARD LENGTH=585;; (*ITAG) Solyc02g021240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13003495-13017750 transcript_region:SL2.40ch02:13003495..13017750+ go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00011148g0023.1 protein AED:0.36 eAED:0.36 QI:520|0.8|0.81|1|0.5|0.54|11|0|390; (*GB) gi|225434656|ref|XP_002279594.1| (e_value=0.0) PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SDI4|PHT41_ORYSJ (e_value=0.0) Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1;; (*TAIR) AT2G29650.1 (e_value=0.0) | Symbols: ANTR1, PHT4;1 | phosphate transporter 4;1 | chr2:12673685-12676003 REVERSE LENGTH=512;; (*ITAG) Solyc09g031750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23690774-23696189 transcript_region:SL2.40ch09:23690774..23696189+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00011148g0019.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|126; (*ITAG) Solyc01g034030.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:35725251-35725619 transcript_region:SL2.40ch01:35725251..35725619- functional_description:"Unknown Protein (AHRD V1)"; NbS00035210g0002.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.33|1|1|3|0|69 NbS00035718g0008.1 protein AED:0.23 eAED:0.26 QI:0|0.92|0.78|1|1|1|14|0|973; (*GB) gi|225444627|ref|XP_002277540.1| (e_value=0.0) PREDICTED: respiratory burst oxidase homolog protein E [Vitis vinifera];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=0.0) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.1 (e_value=0.0) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=926;; (*ITAG) Solyc07g042460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52919322-52925426 transcript_region:SL2.40ch07:52919322..52925426- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein E (AHRD V1 **** B2D0N7_HORVD); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00035718g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|110; (*GB) gi|224068546|ref|XP_002326142.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19240.1 (e_value=2e-20) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6649562-6650384 REVERSE LENGTH=104;; (*ITAG) Solyc07g042450.2.1 (e_value=5e-33) genomic_reference:SL2.40ch07 gene_region:52917306-52918672 transcript_region:SL2.40ch07:52917306..52918672+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024142g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|62900628|sp|Q9ZP40.1|PG1_PEA (e_value=1e-33) RecName: Full=Plastoglobulin-1, chloroplastic; Flags: Precursor;; (*SWP) sp|Q9ZP40|PG1_PEA (e_value=4e-35) Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1;; (*TAIR) AT2G35490.1 (e_value=5e-33) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g076480.2.1 (e_value=8e-81) genomic_reference:SL2.40ch08 gene_region:57653458-57656810 transcript_region:SL2.40ch08:57653458..57656810+ go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00023761g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=1e-74) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15890.1 (e_value=1e-61) | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 | chr5:5187687-5189348 REVERSE LENGTH=526;; (*ITAG) Solyc02g065610.2.1 (e_value=7e-100) genomic_reference:SL2.40ch02 gene_region:31352956-31357159 transcript_region:SL2.40ch02:31352956..31357159- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00023761g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0.5|2|0|136; (*GB) gi|15237211|ref|NP_197093.1| (e_value=3e-31) protein trichome birefringence-like 21 [Arabidopsis thaliana];; (*TAIR) AT5G15890.1 (e_value=6e-34) | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 | chr5:5187687-5189348 REVERSE LENGTH=526;; (*ITAG) Solyc02g065610.2.1 (e_value=4e-36) genomic_reference:SL2.40ch02 gene_region:31352956-31357159 transcript_region:SL2.40ch02:31352956..31357159- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00014700g0002.1 protein AED:0.07 eAED:0.07 QI:195|1|0.83|1|0.8|0.83|6|856|230; (*GB) gi|359497021|ref|XP_002265622.2| (e_value=1e-75) PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Vitis vinifera];; (*TAIR) AT2G35660.1 (e_value=2e-69) | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductase family protein | chr2:14988499-14990320 FORWARD LENGTH=439;; (*ITAG) Solyc06g060880.2.1 (e_value=3e-109) genomic_reference:SL2.40ch06 gene_region:35282556-35285882 transcript_region:SL2.40ch06:35282556..35285882- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00014700g0023.1 protein AED:0.27 eAED:0.27 QI:134|0.77|0.6|0.9|0.33|0.5|10|0|183; (*GB) gi|1616614|emb|CAA69701.1| (e_value=5e-124) small GTP-binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|Q05737|YPTM2_MAIZE (e_value=1e-119) GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1;; (*TAIR) AT1G02130.1 (e_value=1e-115) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc08g078070.2.1 (e_value=4e-126) genomic_reference:SL2.40ch08 gene_region:59084544-59087746 transcript_region:SL2.40ch08:59084544..59087746+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00014700g0006.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|485; (*GB) gi|269996964|gb|ACZ57767.1| (e_value=0.0) glycerolipase A1 [Nicotiana attenuata];; (*SWP) sp|O23522|PLA14_ARATH (e_value=0.0) Phospholipase A1-Ibeta2, chloroplastic OS=Arabidopsis thaliana GN=At4g16820 PE=1 SV=2;; (*TAIR) AT4G16820.1 (e_value=0.0) | Symbols: PLA-I{beta]2 | alpha/beta-Hydrolases superfamily protein | chr4:9467563-9469116 FORWARD LENGTH=517;; (*ITAG) Solyc06g060870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35271907-35273463 transcript_region:SL2.40ch06:35271907..35273463- go_terms:GO:0006629 functional_description:"Lipase-like protein (AHRD V1 ***- Q949E1_ORYSA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00014700g0019.1 protein AED:0.21 eAED:0.23 QI:347|0.57|0.62|1|1|1|8|648|428; (*GB) gi|6492262|gb|AAF14242.1|AF110226_1 (e_value=1e-35) nuclear RNA binding protein [Nicotiana tabacum];; (*TAIR) AT4G17520.1 (e_value=6e-17) | Symbols: | Hyaluronan / mRNA binding family | chr4:9771496-9773313 FORWARD LENGTH=360;; (*ITAG) Solyc08g007220.2.1 (e_value=3e-34) genomic_reference:SL2.40ch08 gene_region:1786907-1790103 transcript_region:SL2.40ch08:1786907..1790103- go_terms:GO:0003723 functional_description:"Nuclear RNA binding protein (Fragment) (AHRD V1 **** Q9SQ56_TOBAC); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; GO:0003723 NbS00004270g0007.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|492; (*GB) gi|147778620|emb|CAN71724.1| (e_value=2e-150) hypothetical protein VITISV_038820 [Vitis vinifera];; (*SWP) sp|Q9LYW0|Y5325_ARATH (e_value=2e-129) BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1;; (*TAIR) AT5G03250.1 (e_value=2e-130) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:774591-776855 FORWARD LENGTH=592;; (*ITAG) Solyc09g007820.1.1 (e_value=7e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1348239-1351133 transcript_region:SL2.40ch09:1348239..1351133+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00005437g0006.1 protein AED:0.00 eAED:0.00 QI:209|1|1|1|1|1|4|272|187; (*GB) gi|359488731|ref|XP_002275276.2| (e_value=1e-42) PREDICTED: uncharacterized protein LOC100264617 [Vitis vinifera];; (*TAIR) AT5G14910.1 (e_value=2e-39) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:4823815-4825196 FORWARD LENGTH=178;; (*ITAG) Solyc02g087150.2.1 (e_value=5e-82) genomic_reference:SL2.40ch02 gene_region:44221975-44225097 transcript_region:SL2.40ch02:44221975..44225097+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein (AHRD V1 *-*- D7M6P1_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00005437g0009.1 protein AED:0.15 eAED:0.15 QI:196|1|1|1|0.66|0.7|10|417|225; (*GB) gi|365222890|gb|AEW69797.1| (e_value=6e-140) Hop-interacting protein THI034 [Solanum lycopersicum];; (*TAIR) AT3G01410.2 (e_value=2e-73) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:153650-155439 REVERSE LENGTH=294;; (*ITAG) Solyc02g087130.2.1 (e_value=1e-142) genomic_reference:SL2.40ch02 gene_region:44207285-44214013 transcript_region:SL2.40ch02:44207285..44214013+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- C3JIP8_RHOER); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00034247g0008.1 protein AED:0.22 eAED:0.22 QI:237|0.77|0.7|1|0.66|0.7|10|0|775; (*GB) gi|225435800|ref|XP_002285750.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera];; (*SWP) sp|Q9Y5A9|YTHD2_HUMAN (e_value=3e-45) YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2;; (*TAIR) AT3G13460.1 (e_value=0.0) | Symbols: ECT2 | evolutionarily conserved C-terminal region 2 | chr3:4385274-4388220 REVERSE LENGTH=667;; (*ITAG) Solyc01g028860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33625778-33629920 transcript_region:SL2.40ch01:33625778..33629920- go_terms:GO:0005515 functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005515 NbS00034247g0007.1 protein AED:0.05 eAED:0.05 QI:901|1|1|1|1|0.87|8|434|640; (*GB) gi|225435800|ref|XP_002285750.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera];; (*SWP) sp|Q0VCZ3|YTHD2_BOVIN (e_value=4e-58) YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1;; (*TAIR) AT3G13460.1 (e_value=0.0) | Symbols: ECT2 | evolutionarily conserved C-terminal region 2 | chr3:4385274-4388220 REVERSE LENGTH=667;; (*ITAG) Solyc01g028860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33625778-33629920 transcript_region:SL2.40ch01:33625778..33629920- go_terms:GO:0005515 functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005515 NbS00034247g0004.1 protein AED:1.00 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|206 NbS00028131g0010.1 protein AED:0.04 eAED:0.05 QI:0|0.66|0|1|0.66|0.5|4|0|927; (*GB) gi|296089594|emb|CBI39413.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=9e-138) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT3G23750.1 (e_value=9e-167) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:8558332-8561263 FORWARD LENGTH=928;; (*ITAG) Solyc09g057680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45731275-45734629 transcript_region:SL2.40ch09:45731275..45734629+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00028131g0001.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.75|0.75|1|1|4|493|127; (*GB) gi|225469328|ref|XP_002271056.1| (e_value=1e-51) PREDICTED: FK506-binding protein 2-1 [Vitis vinifera];; (*SWP) sp|Q38935|FK151_ARATH (e_value=3e-49) Peptidyl-prolyl cis-trans isomerase FKBP15-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=1 SV=2;; (*TAIR) AT3G25220.1 (e_value=2e-50) | Symbols: FKBP15-1 | FK506-binding protein 15 kD-1 | chr3:9182691-9184463 FORWARD LENGTH=153;; (*ITAG) Solyc09g057670.2.1 (e_value=7e-61) genomic_reference:SL2.40ch09 gene_region:45726675-45731083 transcript_region:SL2.40ch09:45726675..45731083- go_terms:GO:0005528 functional_description:"FK506-binding protein 2 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 **-* C8VE36_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00028131g0009.1 protein AED:0.49 eAED:0.49 QI:83|1|0.66|1|1|1|3|0|67; (*TAIR) AT3G25220.1 (e_value=2e-14) | Symbols: FKBP15-1 | FK506-binding protein 15 kD-1 | chr3:9182691-9184463 FORWARD LENGTH=153;; (*ITAG) Solyc09g057670.2.1 (e_value=1e-20) genomic_reference:SL2.40ch09 gene_region:45726675-45731083 transcript_region:SL2.40ch09:45726675..45731083- go_terms:GO:0005528 functional_description:"FK506-binding protein 2 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 **-* C8VE36_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00011138g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.66|1|1|3|0|225; (*GB) gi|255576651|ref|XP_002529215.1| (e_value=4e-69) protein phosphatase-2c, putative [Ricinus communis];; (*SWP) sp|Q9SA22|P2C06_ARATH (e_value=2e-61) Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1;; (*TAIR) AT1G16220.1 (e_value=1e-62) | Symbols: | Protein phosphatase 2C family protein | chr1:5548653-5550553 FORWARD LENGTH=491;; (*ITAG) Solyc10g005640.2.1 (e_value=2e-113) genomic_reference:SL2.40ch10 gene_region:514112-519337 transcript_region:SL2.40ch10:514112..519337+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00021613g0005.1 protein AED:0.39 eAED:0.43 QI:0|0.5|0.46|0.93|0.5|0.53|15|0|515; (*GB) gi|150036254|gb|ABR67417.1| (e_value=0.0) ATP/GTP/Ca++ binding protein [Cucumis melo subsp. melo];; (*SWP) sp|P0CO78|GEM1_CRYNJ (e_value=1e-101) Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1;; (*TAIR) AT5G27540.2 (e_value=0.0) | Symbols: MIRO1 | MIRO-related GTP-ase 1 | chr5:9722816-9727112 FORWARD LENGTH=648;; (*ITAG) Solyc01g098920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81047454-81059347 transcript_region:SL2.40ch01:81047454..81059347+ go_terms:GO:0003924 functional_description:"Mitochondrial Rho GTPase 1 (AHRD V1 **** B2WA10_PYRTR); contains Interpro domain(s) IPR013567 EF hand associated, type-2 "; GO:0003924 NbS00038326g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0|0.25|4|0|310; (*GB) gi|225444399|ref|XP_002268360.1| (e_value=8e-153) PREDICTED: peroxidase 27 isoform 1 [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=3e-130) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=2e-131) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc12g005370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:220123-222070 transcript_region:SL2.40ch12:220123..222070- go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00041266g0010.1 protein AED:0.18 eAED:0.18 QI:131|0|0.5|1|0|0.5|2|0|175; (*GB) gi|225445446|ref|XP_002281900.1| (e_value=2e-32) PREDICTED: uncharacterized protein LOC100259374 [Vitis vinifera];; (*TAIR) AT5G20110.1 (e_value=6e-23) | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209;; (*ITAG) Solyc12g006630.1.1 (e_value=3e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1101151-1105133 transcript_region:SL2.40ch12:1101151..1105133- go_terms:GO:0005875 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 *-*- Q7RN10_PLAYO); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0005875 NbS00041266g0009.1 protein AED:0.05 eAED:0.05 QI:190|1|0.66|1|0|0.66|3|190|538; (*GB) gi|147821409|emb|CAN63504.1| (e_value=2e-121) hypothetical protein VITISV_011679 [Vitis vinifera];; (*SWP) sp|Q6AT25|C3H34_ORYSJ (e_value=6e-45) Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1;; (*TAIR) AT2G02160.1 (e_value=1e-40) | Symbols: | CCCH-type zinc finger family protein | chr2:553407-555899 REVERSE LENGTH=669;; (*ITAG) Solyc12g006620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1091458-1095287 transcript_region:SL2.40ch12:1091458..1095287+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 34 (AHRD V1 ***- C3H34_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00041266g0004.1 protein AED:0.31 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|356526198|ref|XP_003531706.1| (e_value=4e-14) PREDICTED: uncharacterized protein At1g15400-like [Glycine max]; NbS00056657g0004.1 protein AED:0.02 eAED:0.02 QI:526|0.5|0.57|0.71|0.33|0.42|7|336|841; (*GB) gi|75156737|sp|Q8LLE5.1|FPP_SOLLC (e_value=0.0) RecName: Full=Filament-like plant protein; Short=LeFPP;; (*SWP) sp|Q8LLE5|FPP_SOLLC (e_value=0.0) Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1;; (*TAIR) AT1G21810.1 (e_value=9e-95) | Symbols: | Plant protein of unknown function (DUF869) | chr1:7656578-7658634 REVERSE LENGTH=628;; (*ITAG) Solyc06g060320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34680331-34684417 transcript_region:SL2.40ch06:34680331..34684417- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 ***- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00018342g0001.1 protein AED:0.28 eAED:0.33 QI:0|0.87|0.88|1|0.25|0.22|9|1351|437; (*GB) gi|147784106|emb|CAN70102.1| (e_value=5e-27) hypothetical protein VITISV_041741 [Vitis vinifera];; (*ITAG) Solyc01g104530.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:84745224-84751406 transcript_region:SL2.40ch01:84745224..84751406- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00033032g0002.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|584; (*GB) gi|356552286|ref|XP_003544499.1| (e_value=2e-28) PREDICTED: IgA FC receptor-like [Glycine max];; (*SWP) sp|O55103|PRAX_MOUSE (e_value=3e-11) Periaxin OS=Mus musculus GN=Prx PE=1 SV=1;; (*TAIR) AT5G09530.1 (e_value=1e-27) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g100110.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65299562-65300815 transcript_region:SL2.40ch12:65299562..65300815+ functional_description:"Extensin-like protein Ext1 (AHRD V1 ***- Q8VWM5_SOLLC)"; NbS00033032g0020.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|0.6|0.5|6|0|689; (*GB) gi|297735213|emb|CBI17575.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZU29|PP139_ARATH (e_value=6e-174) Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2;; (*TAIR) AT2G01390.1 (e_value=5e-175) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:172256-174137 FORWARD LENGTH=577;; (*ITAG) Solyc01g008480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2569875-2573305 transcript_region:SL2.40ch01:2569875..2573305+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033032g0022.1 protein AED:0.11 eAED:0.12 QI:0|0.2|0|1|0.2|0|6|0|1304; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=0.0) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-160) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=5e-59) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g013280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00033032g0021.1 protein AED:0.59 eAED:0.59 QI:0|0|0|1|1|0.5|2|0|255; (*GB) gi|352090723|gb|AEQ61813.1| (e_value=1e-12) NBS-LRR class disease resistance protein [Sesamum indicum];; (*ITAG) Solyc05g008660.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2954577-2955119 transcript_region:SL2.40ch05:2954577..2955119- functional_description:"Unknown Protein (AHRD V1)"; NbS00033032g0023.1 protein AED:0.51 eAED:0.68 QI:0|0|0|1|0|0|2|0|142; (*GB) gi|359474997|ref|XP_002278409.2| (e_value=2e-70) PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera];; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=2e-64) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=1e-65) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=5e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00005937g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.42|0.12|0.75|0.42|0.62|8|0|695; (*GB) gi|224057172|ref|XP_002299155.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3E9B5|PTR51_ARATH (e_value=0.0) Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1;; (*TAIR) AT5G19640.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:6636460-6638590 FORWARD LENGTH=609;; (*ITAG) Solyc01g006440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1047474-1051067 transcript_region:SL2.40ch01:1047474..1051067- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00005937g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|51556906|gb|AAT72296.2| (e_value=0.0) microsomal omega-6-desaturase [Nicotiana tabacum];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=0.0) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=0.0) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc01g006430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1033539-1035178 transcript_region:SL2.40ch01:1033539..1035178- go_terms:GO:0042389 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** Q461Q1_HEVBR); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00005937g0004.1 protein AED:0.52 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|104 NbS00005937g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|202; (*GB) gi|310927|gb|AAA34061.1| (e_value=1e-35) cysteine-rich extensin-like protein-3 [Nicotiana tabacum];; (*ITAG) Solyc01g006400.2.1 (e_value=3e-33) genomic_reference:SL2.40ch01 gene_region:1021151-1023144 transcript_region:SL2.40ch01:1021151..1023144- functional_description:"Cysteine-rich extensin-like protein-4 (AHRD V1 *-*- Q08197_TOBAC)"; NbS00005937g0105.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|167 NbS00005937g0110.1 protein AED:0.09 eAED:0.31 QI:0|0|0|1|0|0|2|0|224 NbS00053768g0004.1 protein AED:0.11 eAED:0.11 QI:334|1|1|1|0.5|0.42|7|262|505; (*GB) gi|359479221|ref|XP_002279963.2| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100265339 [Vitis vinifera];; (*TAIR) AT4G03250.1 (e_value=1e-68) | Symbols: | Homeodomain-like superfamily protein | chr4:1425050-1427744 FORWARD LENGTH=507;; (*ITAG) Solyc12g099760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65114498-65119396 transcript_region:SL2.40ch12:65114498..65119396- go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *-*- D6BV21_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00031596g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|0|0.66|3|0|405; (*GB) gi|334683127|emb|CBX87929.1| (e_value=0.0) equilibrative nucleoside transporter 1 [Solanum tuberosum];; (*SWP) sp|Q8R139|S29A4_MOUSE (e_value=2e-32) Equilibrative nucleoside transporter 4 OS=Mus musculus GN=Slc29a4 PE=1 SV=1;; (*TAIR) AT1G70330.1 (e_value=2e-175) | Symbols: ENT1,AT, ENT1 | equilibrative nucleotide transporter 1 | chr1:26502920-26504360 FORWARD LENGTH=450;; (*ITAG) Solyc01g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2185118-2189315 transcript_region:SL2.40ch01:2185118..2189315- go_terms:GO:0010174 functional_description:"Equilibrative nucleoside transporter 1 (AHRD V1 **** Q4W6L4_ORYSJ); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0010174 NbS00033317g0004.1 protein AED:0.24 eAED:0.24 QI:188|1|1|1|1|1|16|303|549; (*GB) gi|149938952|gb|ABR45721.1| (e_value=0.0) P5CDH1 [Actinidia chinensis];; (*SWP) sp|Q8VZC3|AL121_ARATH (e_value=0.0) Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1;; (*TAIR) AT5G62530.1 (e_value=0.0) | Symbols: ALDH12A1, ATP5CDH, P5CDH | aldehyde dehydrogenase 12A1 | chr5:25099768-25103159 REVERSE LENGTH=556;; (*ITAG) Solyc06g071000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40003245-40009711 transcript_region:SL2.40ch06:40003245..40009711+ go_terms:GO:0050897,GO:0008270 functional_description:"N-succinylglutamate 5-semialdehyde dehydrogenase (AHRD V1 *-*- ASTD_VIBCH); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0050897,GO:0008270 NbS00041155g0006.1 protein AED:0.00 eAED:0.00 QI:145|1|1|1|1|1|2|668|256; (*GB) gi|355002707|gb|AER51971.1| (e_value=5e-174) 12-oxophytodienoate reductase 3 [Solanum tuberosum];; (*SWP) sp|Q9FEW9|OPR3_SOLLC (e_value=3e-175) 12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1;; (*TAIR) AT2G06050.3 (e_value=1e-134) | Symbols: OPR3 | oxophytodienoate-reductase 3 | chr2:2359240-2361971 REVERSE LENGTH=391;; (*ITAG) Solyc07g007870.2.1 (e_value=2e-176) genomic_reference:SL2.40ch07 gene_region:2549365-2554937 transcript_region:SL2.40ch07:2549365..2554937+ go_terms:GO:0016629 functional_description:"NADH flavin oxidoreductase/12-oxophytodienoate reductase (AHRD V1 **-* Q2U7C4_ASPOR); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0016629 NbS00041155g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|24473796|gb|AAL91663.1| (e_value=2e-25) 60s acidic ribosomal protein [Prunus dulcis];; (*SWP) sp|P41099|RLA2_PARAR (e_value=5e-25) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT3G28500.1 (e_value=3e-24) | Symbols: | 60S acidic ribosomal protein family | chr3:10682204-10682551 FORWARD LENGTH=115;; (*ITAG) Solyc07g007880.1.1 (e_value=3e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:2554381-2554719 transcript_region:SL2.40ch07:2554381..2554719- go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 *-*- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00002151g0007.1 protein AED:0.03 eAED:0.03 QI:173|1|1|1|0|0|4|394|139; (*GB) gi|225470289|ref|XP_002266561.1| (e_value=2e-65) PREDICTED: protein cornichon homolog 4 [Vitis vinifera];; (*SWP) sp|Q84W04|CNIH4_ARATH (e_value=4e-66) Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1;; (*TAIR) AT1G12390.1 (e_value=3e-67) | Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137;; (*ITAG) Solyc06g060550.2.1 (e_value=9e-83) genomic_reference:SL2.40ch06 gene_region:34948371-34952584 transcript_region:SL2.40ch06:34948371..34952584- go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00048045g0011.1 protein AED:0.17 eAED:0.18 QI:225|1|0|1|0|1|2|0|178; (*GB) gi|255538222|ref|XP_002510176.1| (e_value=2e-71) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G47830.1 (e_value=4e-58) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:19373013-19374300 REVERSE LENGTH=173;; (*ITAG) Solyc04g078600.2.1 (e_value=7e-96) genomic_reference:SL2.40ch04 gene_region:60872971-60876969 transcript_region:SL2.40ch04:60872971..60876969+ functional_description:"Genomic DNA chromosome 5 P1 clone MCA23 (AHRD V1 **-- Q9FIJ8_ARATH)"; NbS00048045g0010.1 protein AED:0.16 eAED:0.16 QI:307|0.88|0.88|1|0.72|0.80|26|410|982; (*GB) gi|359492582|ref|XP_002282968.2| (e_value=0.0) PREDICTED: chromosome-associated kinesin KIF4A-like [Vitis vinifera];; (*SWP) sp|Q91784|KIF4_XENLA (e_value=3e-158) Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1;; (*TAIR) AT5G47820.2 (e_value=0.0) | Symbols: FRA1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:19366505-19372229 FORWARD LENGTH=1035;; (*ITAG) Solyc04g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60877592-60888302 transcript_region:SL2.40ch04:60877592..60888302- go_terms:GO:0008574,GO:0008017 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8GS71_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0008017 NbS00005972g0014.1 protein AED:0.19 eAED:0.23 QI:0|0.83|0.85|1|0.5|0.71|7|515|161; (*GB) gi|74038607|dbj|BAE43837.1| (e_value=8e-71) tobamovirus multiplication 3 [Nicotiana tabacum];; (*TAIR) AT2G02180.1 (e_value=2e-65) | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303;; (*ITAG) Solyc01g007900.2.1 (e_value=4e-69) genomic_reference:SL2.40ch01 gene_region:2095959-2102818 transcript_region:SL2.40ch01:2095959..2102818- go_terms:GO:0005515,GO:0046790 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515,GO:0046790 NbS00005972g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|0.5|0.33|3|0|431; (*GB) gi|225425944|ref|XP_002268279.1| (e_value=1e-108) PREDICTED: uncharacterized protein LOC100251079 [Vitis vinifera];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=4e-76) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT2G02070.1 (e_value=3e-90) | Symbols: AtIDD5, IDD5 | indeterminate(ID)-domain 5 | chr2:505523-509154 FORWARD LENGTH=602;; (*ITAG) Solyc04g008500.2.1 (e_value=3e-95) genomic_reference:SL2.40ch04 gene_region:2123723-2129872 transcript_region:SL2.40ch04:2123723..2129872+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU0_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00005972g0013.1 protein AED:0.26 eAED:0.26 QI:12|1|1|1|0.33|0.75|4|393|92; (*GB) gi|74038607|dbj|BAE43837.1| (e_value=3e-59) tobamovirus multiplication 3 [Nicotiana tabacum];; (*TAIR) AT2G02180.1 (e_value=4e-56) | Symbols: TOM3 | tobamovirus multiplication protein 3 | chr2:560976-562961 FORWARD LENGTH=303;; (*ITAG) Solyc01g007900.2.1 (e_value=2e-61) genomic_reference:SL2.40ch01 gene_region:2095959-2102818 transcript_region:SL2.40ch01:2095959..2102818- go_terms:GO:0005515,GO:0046790 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515,GO:0046790 NbS00012817g0012.1 protein AED:0.34 eAED:0.34 QI:165|1|1|1|1|1|3|282|156; (*GB) gi|224080075|ref|XP_002306007.1| (e_value=1e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R833|ACO13_PONAB (e_value=1e-23) Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1;; (*TAIR) AT1G04290.1 (e_value=3e-70) | Symbols: | Thioesterase superfamily protein | chr1:1147721-1148352 REVERSE LENGTH=155;; (*ITAG) Solyc09g005390.2.1 (e_value=4e-94) genomic_reference:SL2.40ch09 gene_region:293798-296596 transcript_region:SL2.40ch09:293798..296596+ go_terms:GO:0016291,GO:0042802 functional_description:"Thioesterase family protein (AHRD V1 **** D7KDD0_ARALY); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00012817g0010.1 protein AED:0.01 eAED:0.01 QI:254|1|1|1|0.5|0.33|3|420|187; (*GB) gi|255564158|ref|XP_002523076.1| (e_value=1e-118) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G66080.1 (e_value=7e-112) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF775 (InterPro:IPR008493); Has 285 Blast hits to 283 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:24600356-24601027 REVERSE LENGTH=190;; (*ITAG) Solyc05g056560.2.1 (e_value=4e-132) genomic_reference:SL2.40ch05 gene_region:64961444-64962429 transcript_region:SL2.40ch05:64961444..64962429- functional_description:"C11orf73 homolog (AHRD V1 ***- B5XFA0_SALSA); contains Interpro domain(s) IPR008493 Protein of unknown function DUF775 "; NbS00012817g0004.1 protein AED:0.17 eAED:0.17 QI:393|1|1|1|0.62|0.77|9|116|359; (*GB) gi|38228677|emb|CAE54075.1| (e_value=0.0) serine/threonine-protein kinase [Fagus sylvatica];; (*SWP) sp|Q7XQP4|SAPK7_ORYSJ (e_value=0.0) Serine/threonine-protein kinase SAPK7 OS=Oryza sativa subsp. japonica GN=SAPK7 PE=2 SV=2;; (*TAIR) AT5G63650.1 (e_value=0.0) | Symbols: SNRK2-5, SNRK2.5, SRK2H | SNF1-related protein kinase 2.5 | chr5:25481631-25483495 REVERSE LENGTH=360;; (*ITAG) Solyc05g056550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64959381-64961447 transcript_region:SL2.40ch05:64959381..64961447+ go_terms:GO:0006970,GO:0006468 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- Q70CF4_FAGSY); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0006970,GO:0006468 NbS00012817g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.71|1|1|1|7|0|460; (*GB) gi|15289760|dbj|BAB63464.1| (e_value=0.0) calcium dependent protein kinase [Solanum tuberosum];; (*SWP) sp|P28583|CDPK_SOYBN (e_value=0.0) Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G35670.1 (e_value=0.0) | Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 | calcium-dependent protein kinase 2 | chr1:13205456-13208058 FORWARD LENGTH=495;; (*ITAG) Solyc05g056570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64966125-64971506 transcript_region:SL2.40ch05:64966125..64971506+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase (AHRD V1 **** Q93XI9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00016852g0002.1 protein AED:0.69 eAED:0.83 QI:0|0|0|0.15|1|1|13|0|527 NbC26314676g0001.1 protein AED:0.39 eAED:0.43 QI:0|0|0|1|0|0|3|0|96 NbS00002346g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|52547872|gb|AAU81956.1| (e_value=3e-39) ERF transcription factor 5 [Nicotiana tabacum];; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=7e-38) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=5e-39) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc11g011750.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4727655-4728155 transcript_region:SL2.40ch11:4727655..4728155+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00002346g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|224110988|ref|XP_002315707.1| (e_value=1e-27) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=7e-27) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=6e-28) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc11g011750.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4727655-4728155 transcript_region:SL2.40ch11:4727655..4728155+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00047916g0004.1 protein AED:0.00 eAED:0.00 QI:242|1|1|1|1|1|5|80|458; (*GB) gi|297744196|emb|CBI37166.3| (e_value=3e-98) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04030.1 (e_value=2e-50) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). | chr1:1040597-1042313 FORWARD LENGTH=434;; (*ITAG) Solyc09g072800.2.1 (e_value=2e-179) genomic_reference:SL2.40ch09 gene_region:60996021-60999194 transcript_region:SL2.40ch09:60996021..60999194+ functional_description:"At1g04030 (Fragment) (AHRD V1 *-*- Q1W7J9_SOLLC)"; NbS00018548g0002.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|118; (*ITAG) Solyc11g008600.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2789140-2789544 transcript_region:SL2.40ch11:2789140..2789544- functional_description:"Genomic DNA chromosome 5 P1 clone MUA2 (AHRD V1 ***- Q9FKM0_ARATH)"; NbS00018548g0009.1 protein AED:0.34 eAED:0.35 QI:685|0.33|0.42|0.85|1|0.85|7|421|63 NbS00018548g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|543; (*ITAG) Solyc08g006440.2.1 (e_value=7e-38) genomic_reference:SL2.40ch08 gene_region:1043932-1046533 transcript_region:SL2.40ch08:1043932..1046533- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00005169g0001.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|111; (*GB) gi|7939581|dbj|BAA95697.1| (e_value=3e-26) thionin like protein [Nicotiana tabacum];; (*SWP) sp|P20346|DF322_SOLTU (e_value=3e-20) Defensin-like protein P322 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G02100.1 (e_value=5e-19) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc07g007750.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:2390188-2391454 transcript_region:SL2.40ch07:2390188..2391454- go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N678_SOLLC); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00011463g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0.6|1|1|1|5|0|420; (*GB) gi|255557737|ref|XP_002519898.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=6e-152) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT1G61590.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:22723691-22726022 REVERSE LENGTH=424;; (*ITAG) Solyc08g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56273456-56276440 transcript_region:SL2.40ch08:56273456..56276440- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00027386g0004.1 protein AED:0.40 eAED:0.81 QI:0|0.5|0.2|1|1|1|5|0|232; (*GB) gi|255568954|ref|XP_002525447.1| (e_value=3e-78) endonuclease, putative [Ricinus communis];; (*TAIR) AT2G23840.1 (e_value=2e-70) | Symbols: | HNH endonuclease | chr2:10153982-10155600 REVERSE LENGTH=284; NbS00058405g0002.1 protein AED:0.08 eAED:0.08 QI:475|1|1|1|1|1|3|236|182; (*GB) gi|225460947|ref|XP_002279766.1| (e_value=4e-74) PREDICTED: UPF0497 membrane protein 16 [Vitis vinifera];; (*SWP) sp|A7P0P3|CSPL3_VITVI (e_value=1e-75) CASP-like protein VIT_19s0090g00570 OS=Vitis vinifera GN=VIT_19s0090g00570 PE=2 SV=1;; (*TAIR) AT5G54980.1 (e_value=4e-56) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:22315799-22316560 FORWARD LENGTH=194;; (*ITAG) Solyc12g005070.1.1 (e_value=5e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30060-31527 transcript_region:SL2.40ch12:30060..31527- functional_description:"UPF0497 membrane protein 16 (AHRD V1 ***- U497G_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00033301g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|0.5|2|85|202; (*GB) gi|255601895|ref|XP_002537773.1| (e_value=1e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G18690.1 (e_value=9e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18680.1); Has 522 Blast hits to 522 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 513; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:10282788-10283636 FORWARD LENGTH=282;; (*ITAG) Solyc03g006120.2.1 (e_value=2e-79) genomic_reference:SL2.40ch03 gene_region:778294-780637 transcript_region:SL2.40ch03:778294..780637- functional_description:"DOG1 alpha splice variant (Fragment) (AHRD V1 **-- A0SVJ8_ARATH)"; NbS00019267g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|62|274; (*GB) gi|6919958|sp|O80361.1|RK4_TOBAC (e_value=9e-158) RecName: Full=50S ribosomal protein L4, chloroplastic; AltName: Full=CL4; AltName: Full=R-protein L4; Flags: Precursor;; (*SWP) sp|O80361|RK4_TOBAC (e_value=3e-159) 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1;; (*TAIR) AT1G07320.2 (e_value=4e-97) | Symbols: RPL4 | ribosomal protein L4 | chr1:2249190-2250189 FORWARD LENGTH=280;; (*ITAG) Solyc07g061900.2.1 (e_value=2e-133) genomic_reference:SL2.40ch07 gene_region:62014111-62015965 transcript_region:SL2.40ch07:62014111..62015965+ go_terms:GO:0008266,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- B6TG27_MAIZE); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0008266,GO:0005515 NbS00034653g0002.1 protein AED:0.39 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|387; (*GB) gi|255580645|ref|XP_002531145.1| (e_value=3e-17) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=1e-16) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=8e-18) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc05g005110.1.1 (e_value=5e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:115571-116788 transcript_region:SL2.40ch05:115571..116788- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00015240g0001.1 protein AED:0.13 eAED:0.13 QI:162|1|1|1|0.66|0.5|4|264|446; (*GB) gi|255538916|ref|XP_002510523.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G75710.1 (e_value=2e-163) | Symbols: | C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462;; (*ITAG) Solyc04g081370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62972909-62976305 transcript_region:SL2.40ch04:62972909..62976305+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00024851g0110.1 protein AED:0.00 eAED:0.00 QI:456|1|1|1|1|1|3|309|47 NbS00024851g0115.1 protein AED:0.35 eAED:0.35 QI:8|0.75|0.6|1|1|0.8|5|0|166 NbS00024851g0114.1 protein AED:0.41 eAED:0.43 QI:79|0.6|0.5|1|0.6|0.83|6|0|198 NbS00025979g0010.1 protein AED:0.15 eAED:0.15 QI:180|1|1|1|0.88|0.9|10|349|408; (*GB) gi|225447502|ref|XP_002265275.1| (e_value=2e-178) PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera];; (*SWP) sp|P49572|TRPC_ARATH (e_value=1e-156) Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2;; (*TAIR) AT5G48220.1 (e_value=2e-165) | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379;; (*ITAG) Solyc03g111850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56510892-56516492 transcript_region:SL2.40ch03:56510892..56516492- go_terms:GO:0004425,GO:0004635 functional_description:"Indole-3-glycerol phosphate synthase-like (AHRD V1 **** C8TFG9_ORYSI); contains Interpro domain(s) IPR013798 Indole-3-glycerol phosphate synthase "; GO:0004425,GO:0004635 NbS00025979g0016.1 protein AED:0.23 eAED:0.25 QI:139|0.63|0.58|1|0.63|0.66|12|0|668; (*GB) gi|224133728|ref|XP_002321646.1| (e_value=6e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=2e-108) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=1e-109) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc03g111870.2.1 (e_value=7e-130) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00025979g0014.1 protein AED:0.21 eAED:0.34 QI:0|0.27|0.16|0.91|0.45|0.5|12|0|567; (*GB) gi|224133736|ref|XP_002321648.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=7e-164) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=5e-165) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc07g065980.2.1 (e_value=1e-147) genomic_reference:SL2.40ch07 gene_region:64766853-64771778 transcript_region:SL2.40ch07:64766853..64771778+ go_terms:GO:0004553 functional_description:"Alkaline alpha galactosidase I (AHRD V1 **-- Q3Y5A3_CUCSA); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0004553 NbS00025979g0015.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|0.5|0.66|3|0|166; (*GB) gi|225456842|ref|XP_002278889.1| (e_value=5e-20) PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=3e-17) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=2e-18) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc03g058970.2.1 (e_value=8e-16) genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase "; NbS00034230g0002.1 protein AED:0.23 eAED:0.23 QI:172|0.5|0.66|1|0.5|1|3|524|215; (*GB) gi|297742323|emb|CBI34472.3| (e_value=3e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MC7|PYL9_ARATH (e_value=3e-94) Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1;; (*TAIR) AT1G01360.1 (e_value=3e-95) | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187;; (*ITAG) Solyc08g082180.2.1 (e_value=5e-123) genomic_reference:SL2.40ch08 gene_region:62203729-62206170 transcript_region:SL2.40ch08:62203729..62206170- go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYL9 (AHRD V1 **-- PYL9_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00034230g0012.1 protein AED:0.25 eAED:0.25 QI:20|1|0.6|1|1|0.8|5|0|441; (*GB) gi|255537765|ref|XP_002509949.1| (e_value=0.0) Polygalacturonase precursor, putative [Ricinus communis];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=7e-137) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23820.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12397217-12400050 REVERSE LENGTH=444;; (*ITAG) Solyc08g082170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62196569-62202288 transcript_region:SL2.40ch08:62196569..62202288- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00034230g0004.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|350538997|ref|NP_001234113.1| (e_value=9e-15) uncharacterized protein LOC778318 precursor [Solanum lycopersicum];; (*ITAG) Solyc08g008290.2.1 (e_value=2e-17) genomic_reference:SL2.40ch08 gene_region:2717877-2720127 transcript_region:SL2.40ch08:2717877..2720127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003290g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.92|0.92|1|0.84|0.85|14|504|566; (*GB) gi|83630945|gb|ABC26921.1| (e_value=0.0) ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum];; (*SWP) sp|Q00081|GLGL1_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1;; (*TAIR) AT4G39210.1 (e_value=0.0) | Symbols: APL3 | Glucose-1-phosphate adenylyltransferase family protein | chr4:18260332-18263181 FORWARD LENGTH=521;; (*ITAG) Solyc01g109790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88397300-88401933 transcript_region:SL2.40ch01:88397300..88401933- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** Q15I66_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site "; GO:0008878 NbS00003290g0008.1 protein AED:0.07 eAED:0.07 QI:310|1|1|1|0.33|0.5|4|567|568; (*GB) gi|359474932|ref|XP_002280381.2| (e_value=5e-78) PREDICTED: F-box protein At2g16365-like [Vitis vinifera];; (*TAIR) AT2G16365.4 (e_value=2e-14) | Symbols: | F-box family protein | chr2:7074940-7079181 FORWARD LENGTH=727;; (*ITAG) Solyc01g109780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88393338-88396861 transcript_region:SL2.40ch01:88393338..88396861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026990g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|0|0|3|0|100; (*ITAG) Solyc02g081640.2.1 (e_value=4e-33) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00009388g0001.1 protein AED:0.05 eAED:0.06 QI:0|0|0.5|1|0|0.5|2|219|254; (*GB) gi|296278612|gb|ADH04270.1| (e_value=4e-118) MYC2b transcription factor [Nicotiana tabacum];; (*SWP) sp|O49687|BH004_ARATH (e_value=1e-64) Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1;; (*TAIR) AT4G17880.1 (e_value=9e-66) | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr4:9933702-9935471 REVERSE LENGTH=589;; (*ITAG) Solyc08g076930.1.1 (e_value=4e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58035870-58037939 transcript_region:SL2.40ch08:58035870..58037939+ go_terms:GO:0016563,GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00009388g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|57|172; (*GB) gi|222822655|gb|ACM68440.1| (e_value=3e-80) stress-associated protein 3 [Solanum lycopersicum];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=9e-68) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=1e-50) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc01g014180.2.1 (e_value=2e-84) genomic_reference:SL2.40ch01 gene_region:11758287-11759264 transcript_region:SL2.40ch01:11758287..11759264- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AHRD V1 ***- SAP8_ORYSJ); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00009388g0010.1 protein AED:0.41 eAED:0.41 QI:37|0|0|0.4|0.75|0.8|5|0|112 NbS00025305g0003.1 protein AED:0.24 eAED:0.24 QI:270|1|1|1|0.8|0.83|6|358|313; (*GB) gi|225429560|ref|XP_002279873.1| (e_value=3e-139) PREDICTED: uncharacterized protein LOC100255893 [Vitis vinifera];; (*TAIR) AT5G11810.1 (e_value=9e-105) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3808739-3810440 FORWARD LENGTH=306;; (*ITAG) Solyc11g070020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51669815-51673400 transcript_region:SL2.40ch11:51669815..51673400- functional_description:"Unknown Protein (AHRD V1)"; NbS00047236g0011.1 protein AED:0.03 eAED:0.05 QI:0|0.84|0.7|0.9|0.94|0.9|20|0|2125; (*GB) gi|255564822|ref|XP_002523405.1| (e_value=0.0) Helicase, putative [Ricinus communis];; (*SWP) sp|Q5ARK3|SWR1_EMENI (e_value=0.0) Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2;; (*TAIR) AT3G12810.1 (e_value=0.0) | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing protein / helicase domain-containing protein | chr3:4065636-4073992 FORWARD LENGTH=2055;; (*ITAG) Solyc03g063220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:31045758-31063672 transcript_region:SL2.40ch03:31045758..31063672- go_terms:GO:0005524 functional_description:"Helicase SWR1 (AHRD V1 *--- A5DYP3_LODEL); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00047236g0013.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|113 NbS00012032g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|505; (*GB) gi|37223500|gb|AAQ90287.1| (e_value=6e-168) beta-1,3-glucanase, acidic [Coffea arabica];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=3e-161) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT1G64760.2 (e_value=2e-162) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24054220-24056194 REVERSE LENGTH=481;; (*ITAG) Solyc03g058450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:21917528-21919776 transcript_region:SL2.40ch03:21917528..21919776- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00035219g0003.1 protein AED:0.13 eAED:0.13 QI:110|1|1|1|0.5|0.33|3|228|184; (*GB) gi|10798750|dbj|BAB16427.1| (e_value=2e-90) NtEIG-E80 [Nicotiana tabacum];; (*TAIR) AT3G54040.1 (e_value=2e-62) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g085010.1.1 (e_value=5e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63675641-63676631 transcript_region:SL2.40ch10:63675641..63676631- functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00010953g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|290; (*GB) gi|356565153|ref|XP_003550809.1| (e_value=6e-127) PREDICTED: probable glycosyltransferase At5g20260-like [Glycine max];; (*SWP) sp|Q3E9A4|GLYT5_ARATH (e_value=8e-114) Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3;; (*TAIR) AT5G20260.1 (e_value=8e-115) | Symbols: | Exostosin family protein | chr5:6836806-6839532 REVERSE LENGTH=458;; (*ITAG) Solyc12g019050.1.1 (e_value=1e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9004310-9005978 transcript_region:SL2.40ch12:9004310..9005978+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M8_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00010953g0002.1 protein AED:0.31 eAED:0.31 QI:0|0.42|0.5|0.87|1|1|8|330|284; (*GB) gi|225434223|ref|XP_002275875.1| (e_value=2e-78) PREDICTED: transcription factor tau subunit sfc1-like [Vitis vinifera];; (*SWP) sp|Q9Y5Q8|TF3C5_HUMAN (e_value=6e-12) General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2;; (*TAIR) AT5G24450.1 (e_value=4e-62) | Symbols: | Transcription factor IIIC, subunit 5 | chr5:8348780-8353130 FORWARD LENGTH=554;; (*ITAG) Solyc12g011180.1.1 (e_value=3e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4021936-4033273 transcript_region:SL2.40ch12:4021936..4033273- functional_description:"General transcription factor 3C polypeptide 5 (AHRD V1 *-*- TF3C5_HUMAN); contains Interpro domain(s) IPR019136 Transcription factor IIIC, subunit 5 "; NbS00028186g0010.1 protein AED:0.21 eAED:0.21 QI:84|1|0.95|1|0.89|0.9|20|0|823; (*GB) gi|225461912|ref|XP_002265434.1| (e_value=0.0) PREDICTED: probable helicase DDB_G0274399-like [Vitis vinifera];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=0.0) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT4G15570.1 (e_value=0.0) | Symbols: MAA3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8893043-8898858 FORWARD LENGTH=818;; (*ITAG) Solyc01g104640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84828311-84840249 transcript_region:SL2.40ch01:84828311..84840249+ functional_description:"Helicase (AHRD V1 *--- D3B244_POLPA)"; NbS00028186g0011.1 protein AED:0.34 eAED:0.34 QI:10|0.25|0.2|1|0.5|0.6|5|42|473; (*GB) gi|224068454|ref|XP_002326124.1| (e_value=4e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUE9|PP149_ARATH (e_value=2e-129) Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1;; (*TAIR) AT2G06000.2 (e_value=1e-130) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:2328000-2329610 REVERSE LENGTH=536;; (*ITAG) Solyc01g104630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84820987-84826024 transcript_region:SL2.40ch01:84820987..84826024- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L9C2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00000976g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|0.5|0.33|3|0|296; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=7e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q04644|ACCO1_CUCME (e_value=1e-32) 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1;; (*TAIR) AT3G11180.2 (e_value=2e-34) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:3504249-3506871 FORWARD LENGTH=403;; (*ITAG) Solyc03g116290.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59822418-59824195 transcript_region:SL2.40ch03:59822418..59824195+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 **-* G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00000976g0009.1 protein AED:0.47 eAED:0.51 QI:0|0|0|0.5|0.2|0|6|0|206; (*GB) gi|2224892|gb|AAB64346.1| (e_value=1e-44) gibberellin 7-oxidase [Cucurbita maxima];; (*SWP) sp|Q43383|ACCH5_ARATH (e_value=2e-14) 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2;; (*TAIR) AT2G30830.1 (e_value=4e-17) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:13132707-13134284 REVERSE LENGTH=358;; (*ITAG) Solyc03g116290.1.1 (e_value=4e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59822418-59824195 transcript_region:SL2.40ch03:59822418..59824195+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 **-* G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00052993g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|296087415|emb|CBI34004.3| (e_value=6e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01710.1 (e_value=8e-41) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:315836-316771 FORWARD LENGTH=311;; (*ITAG) Solyc11g010540.1.1 (e_value=5e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3589421-3590545 transcript_region:SL2.40ch11:3589421..3590545- go_terms:GO:0031072 functional_description:"DnaJ domain containing protein expressed (AHRD V1 *-*- Q84R00_ORYSJ); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00052993g0007.1 protein AED:0.19 eAED:0.19 QI:77|0.94|0.88|1|0.76|0.61|18|0|972; (*GB) gi|356497706|ref|XP_003517700.1| (e_value=0.0) PREDICTED: GPI ethanolamine phosphate transferase 2-like [Glycine max];; (*SWP) sp|Q5H8A4|PIGG_HUMAN (e_value=1e-80) GPI ethanolamine phosphate transferase 2 OS=Homo sapiens GN=PIGG PE=1 SV=1;; (*TAIR) AT2G22530.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr2:9572971-9577441 REVERSE LENGTH=958;; (*ITAG) Solyc11g010550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3598062-3606823 transcript_region:SL2.40ch11:3598062..3606823- go_terms:GO:0008152 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-*- C1GLC2_PARBD); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0008152 NbS00062253g0003.1 protein AED:0.00 eAED:0.00 QI:467|1|1|1|1|1|2|317|453; (*GB) gi|225449066|ref|XP_002275108.1| (e_value=0.0) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=2e-35) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G39220.1 (e_value=0.0) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc05g056030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00049825g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.71|1|0.5|0.28|7|553|628; (*GB) gi|225457536|ref|XP_002272226.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc08g045850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:36801940-36806300 transcript_region:SL2.40ch08:36801940..36806300- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049825g0010.1 protein AED:0.36 eAED:0.41 QI:0|0.2|0|0.83|0.8|0.66|6|0|528; (*GB) gi|147798083|emb|CAN67256.1| (e_value=4e-178) hypothetical protein VITISV_039434 [Vitis vinifera];; (*SWP) sp|Q9FMF6|PP444_ARATH (e_value=9e-139) Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1;; (*TAIR) AT5G64320.1 (e_value=7e-140) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:25723247-25725439 REVERSE LENGTH=730;; (*ITAG) Solyc08g076680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57776442-57778604 transcript_region:SL2.40ch08:57776442..57778604- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008857g0014.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.33|0.25|4|0|570; (*GB) gi|147833409|emb|CAN68525.1| (e_value=2e-176) hypothetical protein VITISV_018083 [Vitis vinifera];; (*SWP) sp|O49287|PP127_ARATH (e_value=3e-150) Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1;; (*TAIR) AT1G77010.1 (e_value=2e-151) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28942710-28944797 FORWARD LENGTH=695;; (*ITAG) Solyc04g074160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57743013-57745070 transcript_region:SL2.40ch04:57743013..57745070+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTZ4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00008857g0013.1 protein AED:0.21 eAED:0.32 QI:0|0|0|1|0|0|5|0|190; (*ITAG) Solyc06g068320.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00034195g0004.1 protein AED:0.08 eAED:0.08 QI:730|1|1|1|1|1|15|379|957; (*GB) gi|359492500|ref|XP_003634421.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CTR1-like [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=7e-130) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G24480.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:12650410-12654755 FORWARD LENGTH=956;; (*ITAG) Solyc04g076480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58934431-58942365 transcript_region:SL2.40ch04:58934431..58942365- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_COTJA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00004935g0012.1 protein AED:0.11 eAED:0.14 QI:0|0|0|0.66|0|0.33|3|0|203; (*GB) gi|224121624|ref|XP_002330747.1| (e_value=9e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FF58|FBD30_ARATH (e_value=2e-15) FBD-associated F-box protein At5g60610 OS=Arabidopsis thaliana GN=At5g60610 PE=2 SV=1;; (*TAIR) AT5G60610.1 (e_value=2e-16) | Symbols: | F-box/RNI-like superfamily protein | chr5:24364049-24365386 FORWARD LENGTH=388;; (*ITAG) Solyc11g011230.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00004935g0010.1 protein AED:0.24 eAED:0.25 QI:0|0.5|0.33|1|0|0|3|0|211; (*GB) gi|15224738|ref|NP_179511.1| (e_value=1e-59) putative receptor-like protein kinase [Arabidopsis thaliana];; (*SWP) sp|O65924|Y2921_ARATH (e_value=3e-61) Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=2 SV=1;; (*TAIR) AT2G19210.1 (e_value=2e-62) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr2:8335639-8339307 REVERSE LENGTH=881;; (*ITAG) Solyc06g062450.2.1 (e_value=1e-91) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00004935g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|147; (*GB) gi|356522218|ref|XP_003529744.1| (e_value=6e-25) PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Glycine max];; (*SWP) sp|Q9FN93|Y5596_ARATH (e_value=2e-18) Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1;; (*TAIR) AT5G59680.1 (e_value=1e-19) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:24046792-24050801 FORWARD LENGTH=887;; (*ITAG) Solyc06g062450.2.1 (e_value=7e-40) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00007190g0001.1 protein AED:0.08 eAED:0.08 QI:179|1|1|1|0.5|0.33|3|443|275; (*GB) gi|225448932|ref|XP_002267178.1| (e_value=1e-93) PREDICTED: heterogeneous nuclear ribonucleoprotein G [Vitis vinifera];; (*SWP) sp|Q99070|GRP2_SORBI (e_value=5e-22) Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1;; (*TAIR) AT5G04280.1 (e_value=3e-58) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr5:1192461-1195413 FORWARD LENGTH=310;; (*ITAG) Solyc03g071560.2.1 (e_value=2e-134) genomic_reference:SL2.40ch03 gene_region:41147503-41156677 transcript_region:SL2.40ch03:41147503..41156677+ go_terms:GO:0008143,GO:0003730 functional_description:"RNA-binding protein-like (AHRD V1 *-** Q8RWN5_ARATH); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008143,GO:0003730 NbS00006914g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|425; (*GB) gi|225433571|ref|XP_002271662.1| (e_value=0.0) PREDICTED: protein ELC [Vitis vinifera];; (*SWP) sp|Q9LHG8|ELC_ARATH (e_value=3e-151) Protein ELC OS=Arabidopsis thaliana GN=ELC PE=1 SV=1;; (*TAIR) AT3G12400.1 (e_value=3e-152) | Symbols: ELC, ATELC | Ubiquitin-conjugating enzyme/RWD-like protein | chr3:3944600-3945796 REVERSE LENGTH=398;; (*ITAG) Solyc10g085590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64036326-64037537 transcript_region:SL2.40ch10:64036326..64037537+ go_terms:GO:0030374,GO:0043130 functional_description:"Tumor susceptibility protein 101 (Fragment) (AHRD V1 *-*- Q09H81_MACMU); contains Interpro domain(s) IPR008883 Tumour susceptibility gene 101 "; GO:0030374,GO:0043130 NbS00010502g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.6|0.33|0.66|0.6|0.66|6|0|403; (*GB) gi|359495648|ref|XP_002265379.2| (e_value=1e-75) PREDICTED: chromosome transmission fidelity protein 18 homolog [Vitis vinifera];; (*TAIR) AT1G04730.1 (e_value=2e-63) | Symbols: CTF18 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1325385-1331086 REVERSE LENGTH=943;; (*ITAG) Solyc09g091650.2.1 (e_value=3e-144) genomic_reference:SL2.40ch09 gene_region:66227327-66243063 transcript_region:SL2.40ch09:66227327..66243063+ go_terms:GO:0003677 functional_description:"Replication factor C large subunit (AHRD V1 *-*- B8D4I5_DESK1); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0003677 NbS00002703g0009.1 protein AED:0.34 eAED:0.35 QI:0|0.8|0.66|1|1|0.83|6|0|443; (*GB) gi|77745479|gb|ABB02638.1| (e_value=0.0) 26S proteasome subunit 4-like [Solanum tuberosum];; (*SWP) sp|Q9SZD4|PRS4A_ARATH (e_value=0.0) 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1;; (*TAIR) AT4G29040.1 (e_value=0.0) | Symbols: RPT2a | regulatory particle AAA-ATPase 2A | chr4:14312369-14314386 FORWARD LENGTH=443;; (*ITAG) Solyc06g083620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45258804-45262774 transcript_region:SL2.40ch06:45258804..45262774- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit 4 (AHRD V1 ***- B6T2S0_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00002703g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|128 NbS00014012g0009.1 protein AED:0.16 eAED:0.16 QI:1247|0.93|0.88|1|0.43|0.47|17|535|463; (*GB) gi|302143730|emb|CBI22591.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55FJ2|WDR91_DICDI (e_value=9e-51) WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum GN=wdr91 PE=4 SV=1;; (*ITAG) Solyc12g021290.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:15378705-15395124 transcript_region:SL2.40ch12:15378705..15395124- functional_description:"YD repeat protein (AHRD V1 ***- B5VU59_SPIMA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00011462g0001.1 protein AED:0.15 eAED:0.15 QI:195|0.83|0.85|1|0.33|0.28|7|647|829; (*GB) gi|75104359|sp|Q5BQN5.1|WAP_SOLLC (e_value=0.0) RecName: Full=WPP domain-associated protein;; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=0.0) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT2G34730.2 (e_value=3e-63) | Symbols: | myosin heavy chain-related | chr2:14654611-14657443 FORWARD LENGTH=825;; (*ITAG) Solyc02g024000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15419890-15424604 transcript_region:SL2.40ch02:15419890..15424604- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00014408g0006.1 protein AED:0.26 eAED:0.26 QI:165|1|0.94|1|0.83|0.84|19|0|849; (*GB) gi|297734578|emb|CBI16629.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXD6|BRE1A_ARATH (e_value=0.0) E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1;; (*TAIR) AT2G44950.1 (e_value=0.0) | Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 | chr2:18542602-18548247 REVERSE LENGTH=878;; (*ITAG) Solyc11g013370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6351744-6371862 transcript_region:SL2.40ch11:6351744..6371862- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase bre1 (AHRD V1 *-*- B6K254_SCHJY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014408g0003.1 protein AED:0.33 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|357472693|ref|XP_003606631.1| (e_value=2e-15) Histone H2B [Medicago truncatula];; (*SWP) sp|Q1SWQ1|H2B2_MEDTR (e_value=8e-15) Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT3G45980.1 (e_value=3e-12) | Symbols: H2B, HTB9 | Histone superfamily protein | chr3:16897492-16897944 REVERSE LENGTH=150;; (*ITAG) Solyc11g007930.1.1 (e_value=2e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2163910-2164326 transcript_region:SL2.40ch11:2163910..2164326- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- D7KHV7_ARALY); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbS00012156g0001.1 protein AED:0.14 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|578; (*GB) gi|359477709|ref|XP_002280801.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242465 [Vitis vinifera];; (*TAIR) AT3G23160.1 (e_value=2e-172) | Symbols: | Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531;; (*ITAG) Solyc09g089640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64742886-64745198 transcript_region:SL2.40ch09:64742886..64745198- functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEX0_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00012156g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|255576858|ref|XP_002529315.1| (e_value=3e-74) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=7e-25) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G14465.1 (e_value=5e-63) | Symbols: AHL20 | AT-hook motif nuclear-localized protein 20 | chr4:8320972-8321817 FORWARD LENGTH=281;; (*ITAG) Solyc09g089620.1.1 (e_value=1e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64728667-64729527 transcript_region:SL2.40ch09:64728667..64729527- functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00012156g0009.1 protein AED:0.21 eAED:0.21 QI:0|0.4|0.33|0.83|0.4|0.33|6|289|193; (*GB) gi|356536651|ref|XP_003536850.1| (e_value=2e-50) PREDICTED: bet1-like SNARE 1-2-like [Glycine max];; (*SWP) sp|Q94CG2|BET12_ARATH (e_value=2e-51) Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4;; (*TAIR) AT4G14455.1 (e_value=1e-52) | Symbols: ATBET12, BET12, ATBS14B, BS14B | Target SNARE coiled-coil domain protein | chr4:8310482-8311938 FORWARD LENGTH=130;; (*ITAG) Solyc09g089630.2.1 (e_value=5e-76) genomic_reference:SL2.40ch09 gene_region:64735134-64741764 transcript_region:SL2.40ch09:64735134..64741764- go_terms:GO:0005484 functional_description:"BET1 (AHRD V1 ***- B6U0C6_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00012156g0003.1 protein AED:0.35 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|225432991|ref|XP_002284519.1| (e_value=3e-23) PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera];; (*TAIR) AT3G04570.1 (e_value=6e-20) | Symbols: AHL19 | AT-hook motif nuclear-localized protein 19 | chr3:1231221-1232168 FORWARD LENGTH=315;; (*ITAG) Solyc09g089620.1.1 (e_value=8e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64728667-64729527 transcript_region:SL2.40ch09:64728667..64729527- functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00002722g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.62|0.66|0.88|1|1|9|4|746; (*GB) gi|255574532|ref|XP_002528177.1| (e_value=2e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G80000.2 (e_value=9e-25) | Symbols: | CASC3/Barentsz eIF4AIII binding | chr1:30093195-30096742 FORWARD LENGTH=605;; (*ITAG) Solyc03g120300.2.1 (e_value=4e-154) genomic_reference:SL2.40ch03 gene_region:62789061-62795056 transcript_region:SL2.40ch03:62789061..62795056+ functional_description:"Glycine-rich protein-like (AHRD V1 ***- Q5ZB64_ORYSJ); contains Interpro domain(s) IPR018545 CASC3/Barentsz eIF4AIII binding "; NbS00004595g0002.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|454; (*GB) gi|347953950|gb|AEP33595.1| (e_value=0.0) CBL-interacting protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|O65554|CIPK6_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1;; (*TAIR) AT4G30960.1 (e_value=0.0) | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441;; (*ITAG) Solyc07g005440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:339058-340332 transcript_region:SL2.40ch07:339058..340332- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 9 (AHRD V1 **** A0MNJ6_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00037731g0003.1 protein AED:0.30 eAED:0.30 QI:67|1|0.8|1|0.75|0.8|5|0|533; (*GB) gi|225444688|ref|XP_002277730.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247308 [Vitis vinifera];; (*TAIR) AT5G20680.2 (e_value=0.0) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6999221-7001596 FORWARD LENGTH=533;; (*ITAG) Solyc12g009150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2461760-2464423 transcript_region:SL2.40ch12:2461760..2464423+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00024929g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|224110228|ref|XP_002315454.1| (e_value=5e-16) predicted protein [Populus trichocarpa]; NbS00024929g0007.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|76|211; (*GB) gi|239056197|emb|CAQ58635.1| (e_value=8e-58) Unknown gene [Vitis vinifera];; (*SWP) sp|Q9SSC7|LOR5_ARATH (e_value=5e-23) Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1;; (*TAIR) AT1G80120.1 (e_value=4e-24) | Symbols: | Protein of unknown function (DUF567) | chr1:30139198-30139986 FORWARD LENGTH=210;; (*ITAG) Solyc09g005210.2.1 (e_value=6e-102) genomic_reference:SL2.40ch09 gene_region:172167-173177 transcript_region:SL2.40ch09:172167..173177+ go_terms:GO:0005515 functional_description:"GTP binding protein (AHRD V1 **** B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; GO:0005515 NbS00024929g0010.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|3|0|451; (*GB) gi|147805065|emb|CAN69181.1| (e_value=3e-87) hypothetical protein VITISV_004338 [Vitis vinifera];; (*SWP) sp|Q8N6R0|MET13_HUMAN (e_value=7e-12) Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1;; (*TAIR) AT5G04610.1 (e_value=5e-65) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1325612-1326916 REVERSE LENGTH=434;; (*ITAG) Solyc11g007550.1.1 (e_value=1e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1800785-1802188 transcript_region:SL2.40ch11:1800785..1802188+ functional_description:"Methyltransferase (AHRD V1 ***- D0N411_PHYIN)"; NbS00034863g0004.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|1|0.5|2|0|189; (*GB) gi|293337831|gb|ADE43159.1| (e_value=6e-13) SFBBdelta protein, partial [Malus x domestica];; (*ITAG) Solyc04g063440.1.1 (e_value=4e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54683676-54684893 transcript_region:SL2.40ch04:54683676..54684893- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 **-- B9N8U5_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; GO:0005515,GO:0004842 NbS00034863g0005.1 protein AED:0.41 eAED:0.54 QI:0|0|0|1|1|1|2|0|94; (*ITAG) Solyc04g063400.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54642430-54642903 transcript_region:SL2.40ch04:54642430..54642903- functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR)"; NbS00030787g0012.1 protein AED:0.03 eAED:0.03 QI:216|1|1|1|0|0|2|240|100; (*GB) gi|224107591|ref|XP_002314529.1| (e_value=4e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|P32110|GSTX6_SOYBN (e_value=8e-21) Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1;; (*TAIR) AT1G17170.1 (e_value=2e-19) | Symbols: ATGSTU24, GST, GSTU24 | glutathione S-transferase TAU 24 | chr1:5869895-5870691 FORWARD LENGTH=218;; (*ITAG) Solyc12g097080.1.1 (e_value=7e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64066026-64067160 transcript_region:SL2.40ch12:64066026..64067160- functional_description:"Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00030787g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.91|0.76|0.92|1|1|13|0|791; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=1e-148) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=2e-106) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc12g097070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64052160-64064288 transcript_region:SL2.40ch12:64052160..64064288- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00012729g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|224105787|ref|XP_002313932.1| (e_value=2e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|P04284|PR06_SOLLC (e_value=3e-63) Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2;; (*TAIR) AT1G50060.1 (e_value=2e-61) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr1:18551186-18552446 FORWARD LENGTH=161;; (*ITAG) Solyc01g106640.2.1 (e_value=9e-81) genomic_reference:SL2.40ch01 gene_region:86193786-86194388 transcript_region:SL2.40ch01:86193786..86194388+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1 (AHRD V1 ***- D2XZ57_9ROSI); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005515 NbS00012729g0005.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0.28|0.57|0.83|0.71|7|0|290; (*GB) gi|359473913|ref|XP_002270595.2| (e_value=3e-49) PREDICTED: DNA primase small subunit-like [Vitis vinifera];; (*SWP) sp|P20664|PRI1_MOUSE (e_value=3e-17) DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1;; (*TAIR) AT5G41880.1 (e_value=1e-37) | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16761071-16764074 FORWARD LENGTH=451;; (*ITAG) Solyc08g082200.2.1 (e_value=2e-57) genomic_reference:SL2.40ch08 gene_region:62213441-62219493 transcript_region:SL2.40ch08:62213441..62219493+ go_terms:GO:0003896 functional_description:"DNA primase (AHRD V1 **** B6T4S3_MAIZE); contains Interpro domain(s) IPR014052 DNA primase, small subunit, eukaryotic and archaeal "; GO:0003896 NbS00058435g0006.1 protein AED:0.09 eAED:0.33 QI:0|0|0|0.8|0.25|0.2|5|0|312; (*ITAG) Solyc01g007200.2.1 (e_value=9e-22) genomic_reference:SL2.40ch01 gene_region:1774695-1778343 transcript_region:SL2.40ch01:1774695..1778343+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038282g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|168; (*GB) gi|270311593|gb|ACZ72945.1| (e_value=5e-95) photosystem I reaction center subunit [Nicotiana tabacum];; (*SWP) sp|P49107|PSAN_ARATH (e_value=3e-65) Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2;; (*TAIR) AT5G64040.1 (e_value=2e-66) | Symbols: PSAN | photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) | chr5:25628724-25629409 REVERSE LENGTH=171;; (*ITAG) Solyc08g013670.2.1 (e_value=3e-77) genomic_reference:SL2.40ch08 gene_region:3047003-3048193 transcript_region:SL2.40ch08:3047003..3048193- go_terms:GO:0005516 functional_description:"Photosystem I reaction center subunit (AHRD V1 ***- D2K7Z2_TOBAC); contains Interpro domain(s) IPR008796 Photosystem I reaction centre subunit N "; GO:0005516 NbS00032801g0002.1 protein AED:0.63 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|98; (*GB) gi|255543645|ref|XP_002512885.1| (e_value=3e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27435.1 (e_value=2e-24) | Symbols: | unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9527956-9528814 REVERSE LENGTH=81;; (*ITAG) Solyc01g009850.2.1 (e_value=8e-17) genomic_reference:SL2.40ch01 gene_region:4369328-4375850 transcript_region:SL2.40ch01:4369328..4375850+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032801g0005.1 protein AED:0.26 eAED:0.31 QI:207|0|0.5|1|0|0.5|2|0|76 NbS00024748g0001.1 protein AED:0.30 eAED:0.30 QI:207|0.5|0.66|1|0|0|3|803|269; (*GB) gi|147768431|emb|CAN73631.1| (e_value=2e-127) hypothetical protein VITISV_026643 [Vitis vinifera];; (*TAIR) AT2G16770.1 (e_value=2e-95) | Symbols: bZIP23 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:7279859-7280817 FORWARD LENGTH=249;; (*ITAG) Solyc01g111580.2.1 (e_value=4e-152) genomic_reference:SL2.40ch01 gene_region:89568634-89573278 transcript_region:SL2.40ch01:89568634..89573278+ go_terms:GO:0005634,GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- D7LU06_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00035249g0003.1 protein AED:0.15 eAED:0.15 QI:3348|0.75|0.4|1|1|1|5|0|140; (*GB) gi|147856521|emb|CAN82836.1| (e_value=3e-53) hypothetical protein VITISV_030871 [Vitis vinifera];; (*TAIR) AT4G39860.1 (e_value=9e-51) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499909-18501472 FORWARD LENGTH=299;; (*ITAG) Solyc03g078610.2.1 (e_value=6e-61) genomic_reference:SL2.40ch03 gene_region:44778618-44782582 transcript_region:SL2.40ch03:44778618..44782582- functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbS00024612g0005.1 protein AED:0.08 eAED:0.08 QI:185|1|1|1|0.5|0.6|5|7|353; (*GB) gi|225461782|ref|XP_002283611.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250342 [Vitis vinifera];; (*TAIR) AT3G14850.2 (e_value=4e-156) | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41 | chr3:4995615-4997611 FORWARD LENGTH=356;; (*ITAG) Solyc12g014360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5213918-5218951 transcript_region:SL2.40ch12:5213918..5218951+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00059654g0001.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|1|1|3|0|274; (*GB) gi|297835246|ref|XP_002885505.1| (e_value=5e-80) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P09444|LEA34_GOSHI (e_value=2e-74) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT3G22490.1 (e_value=7e-82) | Symbols: | Seed maturation protein | chr3:7969785-7970738 REVERSE LENGTH=262;; (*ITAG) Solyc09g082100.2.1 (e_value=3e-123) genomic_reference:SL2.40ch09 gene_region:63346109-63347690 transcript_region:SL2.40ch09:63346109..63347690- functional_description:"Seed maturation protein (AHRD V1 **-- Q2Q4X9_MEDTR); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbC25479631g0003.1 protein AED:0.57 eAED:0.87 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|255541996|ref|XP_002512062.1| (e_value=6e-56) 6-phosphogluconolactonase, putative [Ricinus communis];; (*SWP) sp|Q9LMX8|6PGL1_ARATH (e_value=3e-51) Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=2e-52) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc05g012110.2.1 (e_value=4e-68) genomic_reference:SL2.40ch05 gene_region:5316351-5320016 transcript_region:SL2.40ch05:5316351..5320016- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** Q156I4_MANIN); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00006852g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|0.75|0.6|5|0|471; (*GB) gi|225461632|ref|XP_002285388.1| (e_value=3e-93) PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LKA5|UMP1_ARATH (e_value=2e-88) Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1;; (*TAIR) AT3G15000.1 (e_value=1e-89) | Symbols: | cobalt ion binding | chr3:5050321-5052121 FORWARD LENGTH=395;; (*ITAG) Solyc12g014230.1.1 (e_value=2e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5063272-5065299 transcript_region:SL2.40ch12:5063272..5065299- functional_description:"DAG protein (AHRD V1 *--- B6TDH1_MAIZE)"; NbS00006852g0009.1 protein AED:0.29 eAED:0.29 QI:92|1|1|1|0.8|0.66|6|276|400; (*GB) gi|302142914|emb|CBI20209.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G53250.1 (e_value=1e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). | chr1:19857468-19859156 FORWARD LENGTH=371;; (*ITAG) Solyc12g014220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5057440-5062294 transcript_region:SL2.40ch12:5057440..5062294+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *--- Q01G44_OSTTA)"; NbS00014323g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.7|1|0.66|0.8|10|0|572; (*GB) gi|225457901|ref|XP_002271105.1| (e_value=5e-157) PREDICTED: uncharacterized protein LOC100259195 [Vitis vinifera];; (*TAIR) AT1G20110.1 (e_value=2e-144) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc04g081750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63266616-63275332 transcript_region:SL2.40ch04:63266616..63275332+ go_terms:GO:0005515,GO:0035091 functional_description:"FYVE, RhoGEF and PH domain-containing protein 6 (AHRD V1 *--- FGD6_HUMAN); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00002759g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.5|1|1|1|6|0|397; (*GB) gi|386277419|gb|AFJ04408.1| (e_value=0.0) 5-epi-aristolochene synthase [Nicotiana tabacum];; (*SWP) sp|Q84LG0|5EAS4_NICAT (e_value=2e-180) Probable 5-epi-aristolochene synthase 4 OS=Nicotiana attenuata PE=2 SV=1;; (*TAIR) AT5G23960.2 (e_value=5e-65) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101190.2.1 (e_value=2e-134) genomic_reference:SL2.40ch01 gene_region:82786563-82788821 transcript_region:SL2.40ch01:82786563..82788821+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00002759g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|1|0|0|4|0|255; (*GB) gi|122239909|sp|Q94FM7.2|C71DK_TOBAC (e_value=7e-139) RecName: Full=5-epiaristolochene 1,3-dihydroxylase; Short=NtEAH; AltName: Full=Cytochrome P450 71D20;; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=2e-140) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26310.1 (e_value=2e-35) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc04g083140.1.1 (e_value=3e-117) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00002759g0015.1 protein AED:0.30 eAED:0.33 QI:332|0.2|0.33|1|1|1|6|678|171; (*GB) gi|29427816|sp|Q8HSW1.1|KADC_SOLTU (e_value=2e-14) RecName: Full=Adenylate kinase, chloroplastic; Short=AK; AltName: Full=ATP-AMP transphosphorylase; Flags: Precursor;; (*SWP) sp|Q8HSW1|KADC_SOLTU (e_value=7e-16) Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1;; (*ITAG) Solyc09g007180.2.1 (e_value=1e-15) genomic_reference:SL2.40ch09 gene_region:801969-804985 transcript_region:SL2.40ch09:801969..804985- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00048307g0003.1 protein AED:0.00 eAED:0.00 QI:232|1|0.5|1|1|1|2|105|367; (*GB) gi|225439414|ref|XP_002263907.1| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100247091 [Vitis vinifera];; (*ITAG) Solyc09g005570.2.1 (e_value=4e-94) genomic_reference:SL2.40ch09 gene_region:399157-400731 transcript_region:SL2.40ch09:399157..400731+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037228g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.76|0.71|0.85|0.92|1|14|546|778; (*GB) gi|225459663|ref|XP_002284613.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255662 [Vitis vinifera];; (*TAIR) AT1G21610.1 (e_value=2e-91) | Symbols: | wound-responsive family protein | chr1:7574104-7578643 FORWARD LENGTH=684;; (*ITAG) Solyc11g005130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:113536-127081 transcript_region:SL2.40ch11:113536..127081- functional_description:"Wound-responsive family protein (AHRD V1 **-- D7KK30_ARALY)"; NbS00046603g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.84|0.78|0.96|0.90|0.87|33|0|2199; (*GB) gi|225459364|ref|XP_002285808.1| (e_value=0.0) PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera];; (*SWP) sp|Q38970|ACC1_ARATH (e_value=0.0) Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1;; (*TAIR) AT1G36160.2 (e_value=0.0) | Symbols: ACC1 | acetyl-CoA carboxylase 1 | chr1:13534196-13543773 FORWARD LENGTH=2254;; (*ITAG) Solyc12g056940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00036311g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|112 NbS00025778g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|1|1|5|0|532; (*GB) gi|229368448|gb|ACQ59090.1| (e_value=0.0) BTB/POZ protein [Nicotiana benthamiana];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=0.0) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.2 (e_value=0.0) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22798069 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00055327g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|164|449; (*GB) gi|209954687|dbj|BAG80534.1| (e_value=0.0) putative glycosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SYK9|U74E2_ARATH (e_value=6e-129) UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=1;; (*TAIR) AT1G05680.1 (e_value=5e-130) | Symbols: UGT74E2 | Uridine diphosphate glycosyltransferase 74E2 | chr1:1703196-1704639 REVERSE LENGTH=453;; (*ITAG) Solyc12g096830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63929227-63931184 transcript_region:SL2.40ch12:63929227..63931184+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00028632g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|10241933|dbj|BAB13710.1| (e_value=8e-61) elicitor resposible protein [Nicotiana tabacum];; (*ITAG) Solyc05g013630.1.1 (e_value=2e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6934325-6934771 transcript_region:SL2.40ch05:6934325..6934771+ functional_description:"Unknown protein (Fragment) (AHRD V1 ***- Q43520_SOLLC)"; NbS00006826g0007.1 protein AED:0.14 eAED:0.17 QI:0|0.9|0.81|1|0.9|0.81|11|0|644; (*GB) gi|14599435|emb|CAC43859.1| (e_value=0.0) urease [Solanum tuberosum];; (*SWP) sp|P07374|UREA_CANEN (e_value=0.0) Urease OS=Canavalia ensiformis PE=1 SV=3;; (*TAIR) AT1G67550.1 (e_value=0.0) | Symbols: URE | urease | chr1:25312842-25316911 FORWARD LENGTH=838;; (*ITAG) Solyc05g014970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9174845-9187506 transcript_region:SL2.40ch05:9174845..9187506- go_terms:GO:0009039 functional_description:"Urease alpha subunit (AHRD V1 **** A3YCE1_9GAMM); contains Interpro domain(s) IPR008221 Urease IPR005848 Urease, alpha subunit "; GO:0009039 NbS00011207g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|448; (*GB) gi|225446291|ref|XP_002269790.1| (e_value=0.0) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=3e-103) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT2G19070.1 (e_value=3e-176) | Symbols: SHT | spermidine hydroxycinnamoyl transferase | chr2:8260185-8261958 REVERSE LENGTH=451;; (*ITAG) Solyc07g015960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:6048054-6049409 transcript_region:SL2.40ch07:6048054..6049409- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9N329_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00011207g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|255547704|ref|XP_002514909.1| (e_value=2e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27930.1 (e_value=1e-105) | Symbols: | Protein of unknown function (DUF579) | chr1:9731510-9732379 REVERSE LENGTH=289;; (*ITAG) Solyc07g015920.1.1 (e_value=3e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:5724407-5725234 transcript_region:SL2.40ch07:5724407..5725234- go_terms:GO:0005515 functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV43_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; GO:0005515 NbC26129757g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|348; (*GB) gi|224120324|ref|XP_002318301.1| (e_value=2e-140) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39220.1 (e_value=1e-93) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc10g080690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61232835-61234738 transcript_region:SL2.40ch10:61232835..61234738+ go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00009248g0006.1 protein AED:0.11 eAED:0.11 QI:141|1|1|1|0|0|2|128|282; (*GB) gi|359475168|ref|XP_003631606.1| (e_value=4e-107) PREDICTED: BURP domain-containing protein 17-like [Vitis vinifera];; (*SWP) sp|Q942D4|BURP3_ORYSJ (e_value=2e-51) BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1;; (*TAIR) AT1G49320.1 (e_value=9e-84) | Symbols: ATUSPL1, USPL1 | unknown seed protein like 1 | chr1:18246441-18247817 FORWARD LENGTH=280;; (*ITAG) Solyc01g109470.2.1 (e_value=4e-153) genomic_reference:SL2.40ch01 gene_region:88172514-88173927 transcript_region:SL2.40ch01:88172514..88173927- go_terms:GO:0045735 functional_description:"BURP domain-containing protein (AHRD V1 **-- D7KE28_ARALY); contains Interpro domain(s) IPR004873 BURP "; GO:0045735 NbS00009248g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|0.33|1|1|1|3|0|534; (*GB) gi|255556097|ref|XP_002519083.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8VZ80|PLT5_ARATH (e_value=0.0) Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2;; (*TAIR) AT3G18830.1 (e_value=0.0) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539;; (*ITAG) Solyc01g109460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88167522-88170694 transcript_region:SL2.40ch01:88167522..88170694+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_RAT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00045137g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|226532207|ref|NP_001141633.1| (e_value=4e-60) uncharacterized protein LOC100273753 [Zea mays];; (*SWP) sp|O23628|H2AV1_ARATH (e_value=1e-61) Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1;; (*TAIR) AT3G54560.1 (e_value=1e-62) | Symbols: HTA11 | histone H2A 11 | chr3:20196532-20197466 FORWARD LENGTH=136;; (*ITAG) Solyc06g084090.2.1 (e_value=6e-64) genomic_reference:SL2.40ch06 gene_region:45626067-45629099 transcript_region:SL2.40ch06:45626067..45629099+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 *-*- C5XX54_SORBI); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00054704g0004.1 protein AED:0.14 eAED:0.16 QI:682|0.87|0.88|1|0.62|0.55|9|469|61; (*GB) gi|4097583|gb|AAD00118.1| (e_value=4e-17) NTGP3 [Nicotiana tabacum];; (*SWP) sp|Q38912|RAC3_ARATH (e_value=4e-16) Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1;; (*TAIR) AT4G35020.3 (e_value=3e-17) | Symbols: RAC3 | RAC-like 3 | chr4:16673176-16674540 FORWARD LENGTH=198;; (*ITAG) Solyc01g111560.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:89549442-89554588 transcript_region:SL2.40ch01:89549442..89554588+ go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00016161g0008.1 protein AED:0.18 eAED:0.18 QI:156|0.33|0.5|0.5|0.33|0.25|4|0|129; (*ITAG) Solyc00g005860.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3434263-3434662 transcript_region:SL2.40ch00:3434263..3434662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016161g0009.1 protein AED:0.13 eAED:0.13 QI:216|0.83|0.76|1|0.79|0.72|25|0|1411; (*GB) gi|225445364|ref|XP_002284885.1| (e_value=0.0) PREDICTED: ABC transporter G family member 32 [Vitis vinifera];; (*SWP) sp|O81016|AB32G_ARATH (e_value=0.0) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT2G26910.1 (e_value=0.0) | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 | chr2:11481623-11487874 FORWARD LENGTH=1420;; (*ITAG) Solyc05g018510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22096967-22107681 transcript_region:SL2.40ch05:22096967..22107681+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 32 (AHRD V1 ***- AB32G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00016161g0010.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0.5|0.33|3|0|147; (*ITAG) Solyc03g083740.1.1 (e_value=9e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47224097-47225350 transcript_region:SL2.40ch03:47224097..47225350+ functional_description:"Os10g0104700 protein (Fragment) (AHRD V1 *-*- Q0IZD0_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00016161g0011.1 protein AED:0.42 eAED:0.88 QI:0|0|0|1|0|0|2|0|63 NbS00062081g0001.1 protein AED:0.20 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|312146948|gb|ADK12668.1| (e_value=2e-28) emission of benzenoids III [Petunia x hybrida];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=1e-15) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*ITAG) Solyc01g111500.2.1 (e_value=3e-24) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00014245g0001.1 protein AED:0.48 eAED:0.54 QI:0|0|0|0.6|1|1|5|0|112 NbS00014245g0006.1 protein AED:0.36 eAED:0.44 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|224129942|ref|XP_002320709.1| (e_value=4e-79) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M205|CCU22_ARATH (e_value=2e-63) Cyclin-U2-2 OS=Arabidopsis thaliana GN=CYCU2-2 PE=1 SV=1;; (*TAIR) AT3G60550.1 (e_value=1e-64) | Symbols: CYCP3;2 | cyclin p3;2 | chr3:22379846-22380641 FORWARD LENGTH=230;; (*ITAG) Solyc01g090800.2.1 (e_value=3e-91) genomic_reference:SL2.40ch01 gene_region:76269467-76270584 transcript_region:SL2.40ch01:76269467..76270584+ go_terms:GO:0005515,GO:0004693 functional_description:"Cyclin-dependent kinase (AHRD V1 **** A6YTD1_CUCME); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0004693 NbS00039043g0003.1 protein AED:0.21 eAED:0.40 QI:77|0|0|1|0|0|2|0|154; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-13) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00037646g0004.1 protein AED:0.14 eAED:0.16 QI:0|0.71|0.75|1|0.57|0.5|8|369|270; (*GB) gi|255582236|ref|XP_002531910.1| (e_value=2e-83) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L649|BB_ARATH (e_value=4e-63) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT3G63530.2 (e_value=3e-64) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc01g087060.2.1 (e_value=3e-147) genomic_reference:SL2.40ch01 gene_region:73754738-73759711 transcript_region:SL2.40ch01:73754738..73759711- go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00040208g0010.1 protein AED:0.09 eAED:0.09 QI:475|0.90|0.91|1|0.90|0.91|12|0|1197; (*GB) gi|356571326|ref|XP_003553829.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 8-like [Glycine max];; (*SWP) sp|Q9LK90|ALA8_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 8 OS=Arabidopsis thaliana GN=ALA8 PE=2 SV=1;; (*TAIR) AT3G27870.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:10330950-10335288 FORWARD LENGTH=1189;; (*ITAG) Solyc02g086800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43993361-44001589 transcript_region:SL2.40ch02:43993361..44001589+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1HB29_PARBA); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00040208g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|225452448|ref|XP_002277810.1| (e_value=7e-58) PREDICTED: uncharacterized protein LOC100254241 [Vitis vinifera];; (*TAIR) AT1G23710.1 (e_value=2e-29) | Symbols: | Protein of unknown function (DUF1645) | chr1:8385363-8386250 FORWARD LENGTH=295;; (*ITAG) Solyc02g086810.1.1 (e_value=2e-126) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:44004622-44005443 transcript_region:SL2.40ch02:44004622..44005443+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00003886g0005.1 protein AED:0.10 eAED:0.14 QI:24|0.5|0.2|1|0.5|0.2|5|0|997; (*GB) gi|359493408|ref|XP_003634589.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=0.0) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G72180.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:27164074-27167204 FORWARD LENGTH=977;; (*ITAG) Solyc06g065260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37091747-37095119 transcript_region:SL2.40ch06:37091747..37095119+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00003886g0203.1 protein AED:0.08 eAED:0.09 QI:0|0.6|0.5|0.83|1|1|6|0|155 NbS00003886g0210.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|3|280|407 NbS00000712g0002.1 protein AED:0.08 eAED:0.08 QI:141|1|1|1|0.5|0.57|7|922|150; (*GB) gi|224068925|ref|XP_002302858.1| (e_value=9e-77) predicted protein [Populus trichocarpa];; (*TAIR) AT2G31340.1 (e_value=1e-66) | Symbols: emb1381 | embryo defective 1381 | chr2:13361614-13364633 FORWARD LENGTH=559;; (*ITAG) Solyc05g042120.2.1 (e_value=2e-69) genomic_reference:SL2.40ch05 gene_region:54113886-54127382 transcript_region:SL2.40ch05:54113886..54127382+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000712g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.62|0.44|1|0.37|0.55|9|0|387; (*GB) gi|255568735|ref|XP_002525339.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G31340.1 (e_value=2e-173) | Symbols: emb1381 | embryo defective 1381 | chr2:13361614-13364633 FORWARD LENGTH=559;; (*ITAG) Solyc05g042120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:54113886-54127382 transcript_region:SL2.40ch05:54113886..54127382+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015227g0002.1 protein AED:0.14 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|237783971|gb|ACR19782.1| (e_value=5e-91) ATP synthase CF1 beta subunit [Nolana galapagensis];; (*SWP) sp|P26530|ATPB_NICRU (e_value=9e-90) ATP synthase subunit beta, chloroplastic OS=Nicotiana rustica GN=atpB PE=3 SV=1;; (*ITAG) ATCG00480.1 (e_value=3e-88) | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=498;; (*ITAG) Solyc01g007320.2.1 (e_value=3e-90) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00015227g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.84|0.78|1|0.76|0.78|14|343|785; (*GB) gi|297741194|emb|CBI31925.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q944R7|ANM16_ARATH (e_value=0.0) Protein arginine N-methyltransferase 1.6 OS=Arabidopsis thaliana GN=PRMT16 PE=2 SV=2;; (*TAIR) AT4G16570.1 (e_value=0.0) | Symbols: ATPRMT7, PRMT7 | protein arginine methyltransferase 7 | chr4:9336815-9340692 FORWARD LENGTH=724;; (*ITAG) Solyc06g060670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35076833-35086979 transcript_region:SL2.40ch06:35076833..35086979+ go_terms:GO:0035243,GO:0044020 functional_description:"Protein arginine N-methyltransferase (AHRD V1 **** A9U225_PHYPA); contains Interpro domain(s) IPR014644 Protein arginine N-methyltransferase "; GO:0035243,GO:0044020 NbS00026128g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|0.66|1|0.66|3|0|303 NbS00026128g0016.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|0.5|1|1|2|137|199; (*ITAG) Solyc01g094420.2.1 (e_value=4e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00026128g0019.1 protein AED:0.30 eAED:0.40 QI:0|0|0|0.66|0.5|0.66|3|0|342; (*GB) gi|190607705|gb|ACE79511.1| (e_value=8e-79) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=2e-59) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=7e-37) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064750.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36739600-36741891 transcript_region:SL2.40ch06:36739600..36741891+ go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00026128g0018.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|206; (*GB) gi|350536521|ref|NP_001233995.1| (e_value=5e-12) hero resistance protein [Solanum lycopersicum];; (*ITAG) Solyc05g047700.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58330521-58335186 transcript_region:SL2.40ch05:58330521..58335186+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00033094g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|946; (*GB) gi|359489321|ref|XP_002269223.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera];; (*SWP) sp|Q9LFC5|PP360_ARATH (e_value=1e-84) Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1;; (*TAIR) AT5G01110.1 (e_value=8e-86) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:42114-44303 REVERSE LENGTH=729;; (*ITAG) Solyc01g088670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75192649-75195378 transcript_region:SL2.40ch01:75192649..75195378+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033094g0002.1 protein AED:0.27 eAED:0.28 QI:0|0.75|0.6|1|1|1|5|281|409; (*GB) gi|255571079|ref|XP_002526490.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=2e-139) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT5G47070.1 (e_value=1e-140) | Symbols: | Protein kinase superfamily protein | chr5:19118683-19120528 REVERSE LENGTH=410;; (*ITAG) Solyc01g088690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75198540-75201611 transcript_region:SL2.40ch01:75198540..75201611- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbC25769666g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|224094841|ref|XP_002334784.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=1e-15) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT1G69550.1 (e_value=2e-24) | Symbols: | disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400;; (*ITAG) Solyc07g052770.2.1 (e_value=2e-47) genomic_reference:SL2.40ch07 gene_region:58542010-58545879 transcript_region:SL2.40ch07:58542010..58545879+ go_terms:GO:0030275,GO:0000166 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030275,GO:0000166 NbS00058188g0004.1 protein AED:0.13 eAED:0.13 QI:233|0.93|0.93|1|0.66|0.87|16|290|730; (*GB) gi|255582311|ref|XP_002531946.1| (e_value=0.0) acetyltransferase, putative [Ricinus communis];; (*SWP) sp|Q5ZHV2|NAA35_CHICK (e_value=1e-54) N-alpha-acetyltransferase 35, NatC auxiliary subunit OS=Gallus gallus GN=NAA35 PE=2 SV=1;; (*TAIR) AT2G11000.1 (e_value=0.0) | Symbols: ATMAK10, MAK10 | MAK10 homologue | chr2:4341328-4347768 REVERSE LENGTH=728;; (*ITAG) Solyc07g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2458556-2475894 transcript_region:SL2.40ch07:2458556..2475894+ go_terms:GO:0016407 functional_description:"N-alpha-acetyltransferase 35, NatC auxiliary subunit (AHRD V1 **** NAA35_CHICK); contains Interpro domain(s) IPR007244 Mak10 subunit, NatC N(alpha)-terminal acetyltransferase "; GO:0016407 NbS00005988g0006.1 protein AED:0.37 eAED:0.39 QI:248|0|0.5|1|1|1|2|0|118; (*GB) gi|2497757|sp|Q42952.1|NLTP1_TOBAC (e_value=3e-62) RecName: Full=Non-specific lipid-transfer protein 1; Short=LTP 1; AltName: Full=Pathogenesis-related protein 14; Short=PR-14; Flags: Precursor;; (*SWP) sp|Q42952|NLTP1_TOBAC (e_value=8e-64) Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1;; (*TAIR) AT3G51590.1 (e_value=2e-30) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc10g075110.1.1 (e_value=1e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58157020-58157628 transcript_region:SL2.40ch10:58157020..58157628- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen "; GO:0006869 NbS00005988g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|115; (*GB) gi|49659945|gb|AAT68263.1| (e_value=2e-39) lipid transfer protein [Nicotiana glauca];; (*SWP) sp|P85894|LTP1_MORNI (e_value=1e-36) Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1;; (*TAIR) AT5G59310.1 (e_value=2e-28) | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925296-23925772 REVERSE LENGTH=112;; (*ITAG) Solyc06g005770.1.1 (e_value=6e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:808170-808529 transcript_region:SL2.40ch06:808170..808529+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A5JUZ8_SESIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00010479g0008.1 protein AED:0.11 eAED:0.11 QI:180|0.66|0.42|1|1|1|7|0|610; (*GB) gi|225455058|ref|XP_002263812.1| (e_value=4e-161) PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310-like [Vitis vinifera];; (*SWP) sp|Q9C823|Y1523_ARATH (e_value=2e-127) C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana GN=At1g52310 PE=2 SV=1;; (*TAIR) AT1G52310.1 (e_value=1e-128) | Symbols: | protein kinase family protein / C-type lectin domain-containing protein | chr1:19478401-19480462 FORWARD LENGTH=552;; (*ITAG) Solyc02g068370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32902478-32907263 transcript_region:SL2.40ch02:32902478..32907263+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00010479g0009.1 protein AED:0.30 eAED:0.31 QI:133|0.6|0.45|1|0.9|0.90|11|0|448; (*GB) gi|297738015|emb|CBI27216.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O49434|AAH_ARATH (e_value=0.0) Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=1 SV=2;; (*TAIR) AT4G20070.1 (e_value=0.0) | Symbols: ATAAH, AAH | allantoate amidohydrolase | chr4:10861548-10864529 FORWARD LENGTH=525;; (*ITAG) Solyc02g068380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32909088-32915018 transcript_region:SL2.40ch02:32909088..32915018- go_terms:GO:0008233,GO:0047652 functional_description:"N-carbamoyl-L-amino-acid amidohydrolase (AHRD V1 **-- Q1LHR1_RALME); contains Interpro domain(s) IPR010158 Amidase, hydantoinase/carbamoylase "; GO:0008233,GO:0047652 NbS00047952g0004.1 protein AED:0.09 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|425; (*GB) gi|358248628|ref|NP_001239913.1| (e_value=9e-18) uncharacterized protein LOC100783413 [Glycine max];; (*TAIR) AT4G21895.1 (e_value=1e-14) | Symbols: | DNA binding | chr4:11613523-11614242 REVERSE LENGTH=239;; (*ITAG) Solyc10g005250.2.1 (e_value=7e-128) genomic_reference:SL2.40ch10 gene_region:199800-201389 transcript_region:SL2.40ch10:199800..201389+ functional_description:"Genomic DNA chromosome 5 P1 clone MXC20 (AHRD V1 *--- Q9FLX2_ARATH)"; NbS00047952g0006.1 protein AED:0.16 eAED:0.16 QI:136|0.75|0.6|1|0.75|0.6|5|881|360; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=1e-134) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=7e-126) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.1 (e_value=1e-125) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917301 FORWARD LENGTH=306;; (*ITAG) Solyc10g005260.2.1 (e_value=2e-171) genomic_reference:SL2.40ch10 gene_region:203437-211345 transcript_region:SL2.40ch10:203437..211345- go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **-* Q9LEB4_NICPL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00012985g0002.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|171; (*GB) gi|255573617|ref|XP_002527731.1| (e_value=2e-20) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SRQ8|ATL51_ARATH (e_value=1e-16) RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2;; (*TAIR) AT3G03550.1 (e_value=1e-17) | Symbols: | RING/U-box superfamily protein | chr3:850391-851461 REVERSE LENGTH=356;; (*ITAG) Solyc01g105610.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85488464-85489138 transcript_region:SL2.40ch01:85488464..85489138+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012985g0003.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|255573615|ref|XP_002527730.1| (e_value=2e-33) RING-H2 finger protein ATL2J, putative [Ricinus communis];; (*SWP) sp|O80927|ATL33_ARATH (e_value=5e-19) RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2;; (*TAIR) AT2G37580.1 (e_value=4e-20) | Symbols: | RING/U-box superfamily protein | chr2:15764745-15765452 FORWARD LENGTH=235;; (*ITAG) Solyc09g010650.1.1 (e_value=5e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3978499-3978951 transcript_region:SL2.40ch09:3978499..3978951+ go_terms:GO:0008270 functional_description:"RING finger-like (AHRD V1 *-*- Q5Z6V1_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00045896g0011.1 protein AED:0.29 eAED:0.34 QI:0|0.7|0.72|1|0.9|0.81|11|0|622; (*GB) gi|75268416|sp|Q52JK6.1|VIP2_NICBE (e_value=0.0) RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2;; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=0.0) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*TAIR) AT1G07705.1 (e_value=0.0) | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2382090-2385282 FORWARD LENGTH=546;; (*ITAG) Solyc11g072940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53178457-53185286 transcript_region:SL2.40ch11:53178457..53185286+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00045896g0010.1 protein AED:0.66 eAED:0.66 QI:0|0.5|0|0.66|1|0.66|3|0|72; (*GB) gi|75268416|sp|Q52JK6.1|VIP2_NICBE (e_value=2e-29) RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2;; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=5e-31) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*TAIR) AT1G07705.2 (e_value=6e-26) | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2382090-2385856 FORWARD LENGTH=614;; (*ITAG) Solyc11g072940.1.1 (e_value=1e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53178457-53185286 transcript_region:SL2.40ch11:53178457..53185286+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00045896g0007.1 protein AED:0.17 eAED:0.17 QI:137|0.89|1|1|0.84|0.8|20|108|790; (*GB) gi|225435112|ref|XP_002284524.1| (e_value=0.0) PREDICTED: E3 UFM1-protein ligase 1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LX73|UFL1_ARATH (e_value=0.0) E3 UFM1-protein ligase 1 homolog OS=Arabidopsis thaliana GN=At3g46220 PE=2 SV=1;; (*TAIR) AT3G46220.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:16979174-16983970 FORWARD LENGTH=804;; (*ITAG) Solyc11g072950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53186161-53193294 transcript_region:SL2.40ch11:53186161..53193294- go_terms:GO:0005515 functional_description:"E3 UFM1-protein ligase 1 homolog (AHRD V1 ***- UFL1_ARATH); contains Interpro domain(s) IPR018611 Protein of unknown function DUF2042 "; GO:0005515 NbS00020122g0006.1 protein AED:0.00 eAED:0.00 QI:87|1|1|1|1|1|2|246|92; (*GB) gi|225448479|ref|XP_002274326.1| (e_value=1e-20) PREDICTED: EMB-1 protein [Vitis vinifera];; (*SWP) sp|P42755|EM4_WHEAT (e_value=2e-20) Em protein H5 OS=Triticum aestivum GN=EMH5 PE=2 SV=1;; (*TAIR) AT2G40170.1 (e_value=1e-20) | Symbols: ATEM6, GEA6, EM6 | Stress induced protein | chr2:16779792-16780167 REVERSE LENGTH=92;; (*ITAG) Solyc06g048840.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:28315979-28316547 transcript_region:SL2.40ch06:28315979..28316547- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- A4VBF1_9FABA); contains Interpro domain(s) IPR000389 Small hydrophilic plant seed protein "; NbS00038032g0003.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|357494399|ref|XP_003617488.1| (e_value=2e-58) DNA/RNA-binding protein KIN17 [Medicago truncatula];; (*SWP) sp|Q55D16|KIN17_DICDI (e_value=6e-25) KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1;; (*TAIR) AT1G55460.1 (e_value=5e-56) | Symbols: | DNA/RNA-binding protein Kin17, conserved region | chr1:20707567-20708802 FORWARD LENGTH=411;; (*ITAG) Solyc05g054500.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63560285-63561484 transcript_region:SL2.40ch05:63560285..63561484- go_terms:GO:0003723,GO:0003690 functional_description:"DNA/RNA-binding protein KIN17 (AHRD V1 **-* KIN17_MOUSE); contains Interpro domain(s) IPR019447 DNA/RNA-binding protein Kin17, conserved region "; GO:0003723,GO:0003690 NbS00038032g0004.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|100 NbS00029459g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|385; (*GB) gi|167600643|gb|ABZ89185.1| (e_value=1e-158) putative protein [Coffea canephora];; (*TAIR) AT3G04550.1 (e_value=8e-125) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:1225961-1227310 FORWARD LENGTH=449;; (*ITAG) Solyc11g006060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:860023-861378 transcript_region:SL2.40ch11:860023..861378+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00S02_OSTTA)"; NbS00031647g0014.1 protein AED:0.41 eAED:0.44 QI:0|1|0.25|1|1|0.75|4|0|142; (*GB) gi|225448643|ref|XP_002279449.1| (e_value=3e-69) PREDICTED: uncharacterized protein LOC100258787 [Vitis vinifera];; (*TAIR) AT5G05310.2 (e_value=4e-62) | Symbols: | TLC ATP/ADP transporter | chr5:1571271-1574341 FORWARD LENGTH=496;; (*ITAG) Solyc06g050210.2.1 (e_value=2e-81) genomic_reference:SL2.40ch06 gene_region:29171032-29184391 transcript_region:SL2.40ch06:29171032..29184391+ functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 ***- B2IEC2_BEII9)"; NbS00031647g0009.1 protein AED:0.14 eAED:0.44 QI:0|0.5|0.66|1|1|1|3|49|109; (*GB) gi|147811263|emb|CAN65486.1| (e_value=2e-14) hypothetical protein VITISV_003680 [Vitis vinifera];; (*SWP) sp|Q9SU25|T2FA_ARATH (e_value=1e-11) Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 PE=1 SV=1;; (*TAIR) AT4G12610.2 (e_value=6e-13) | Symbols: RAP74, ATRAP74 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors | chr4:7455565-7458318 FORWARD LENGTH=506;; (*ITAG) Solyc11g012150.1.1 (e_value=6e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5083236-5090295 transcript_region:SL2.40ch11:5083236..5090295- go_terms:GO:0005634,GO:0006367 functional_description:"Transcription initiation factor IIF alpha subunit (AHRD V1 ***- B6T7E5_MAIZE); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit "; GO:0005634,GO:0006367 NbS00031647g0003.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|90 NbS00016033g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|584; (*GB) gi|225461363|ref|XP_002281949.1| (e_value=0.0) PREDICTED: ABC transporter G family member 9-like [Vitis vinifera];; (*SWP) sp|Q9SZR9|AB9G_ARATH (e_value=0.0) ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=2;; (*TAIR) AT4G27420.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr4:13712434-13714797 REVERSE LENGTH=638;; (*ITAG) Solyc07g063400.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63093862-63097057 transcript_region:SL2.40ch07:63093862..63097057+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 9 (AHRD V1 ***- AB9G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00016033g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|296083852|emb|CBI24240.3| (e_value=8e-44) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12300.1 (e_value=4e-36) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:3978508-3979632 REVERSE LENGTH=374;; (*ITAG) Solyc11g064840.1.1 (e_value=6e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47142946-47144115 transcript_region:SL2.40ch11:47142946..47144115- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7M4I2_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00025438g0004.1 protein AED:0.16 eAED:0.16 QI:51|1|1|1|1|1|5|591|422; (*GB) gi|391868374|gb|AFM44934.1| (e_value=2e-155) golden1-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SIV3|GLK1_ARATH (e_value=6e-66) Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2;; (*TAIR) AT2G20570.1 (e_value=5e-67) | Symbols: GPRI1, GLK1, ATGLK1 | GBF's pro-rich region-interacting factor 1 | chr2:8855486-8857522 FORWARD LENGTH=420;; (*ITAG) Solyc07g053630.2.1 (e_value=3e-157) genomic_reference:SL2.40ch07 gene_region:59386217-59390311 transcript_region:SL2.40ch07:59386217..59390311- go_terms:GO:0003700,GO:0010843 functional_description:"Response regulator (AHRD V1 *--- A1A6A6_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700,GO:0010843 NbS00036265g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|2|269|533; (*GB) gi|58826317|gb|AAW82883.1| (e_value=0.0) phytoalexin-deficient 4-1 protein [Solanum tuberosum];; (*TAIR) AT3G52430.1 (e_value=5e-119) | Symbols: PAD4, ATPAD4 | alpha/beta-Hydrolases superfamily protein | chr3:19431566-19434292 FORWARD LENGTH=541;; (*ITAG) Solyc02g032850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20127981-20138156 transcript_region:SL2.40ch02:20127981..20138156+ go_terms:GO:0005515,GO:0016298 functional_description:"Phytoalexin deficient 4 (Fragment) (AHRD V1 ***- B2BDV5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0016298 NbS00036265g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|278|490; (*GB) gi|302144127|emb|CBI23232.3| (e_value=7e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9JJX7|TYDP2_MOUSE (e_value=6e-17) Tyrosyl-DNA phosphodiesterase 2 OS=Mus musculus GN=Tdp2 PE=2 SV=1;; (*TAIR) AT1G11800.1 (e_value=3e-142) | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr1:3985520-3987263 REVERSE LENGTH=441;; (*ITAG) Solyc02g032870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20146619-20149536 transcript_region:SL2.40ch02:20146619..20149536+ go_terms:GO:0005622 functional_description:"5'-tyrosyl-DNA phosphodiesterase (AHRD V1 *--- TDP2_BOVIN); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0005622 NbS00010253g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|1|1|1|2|0|97 NbS00017465g0003.1 protein AED:0.20 eAED:0.20 QI:230|1|1|1|0.75|0.6|5|402|144; (*GB) gi|2366750|dbj|BAA22083.1| (e_value=3e-72) RNA binding protein [Nicotiana sylvestris];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=2e-42) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT4G13850.3 (e_value=1e-43) | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=144;; (*ITAG) Solyc05g053780.2.1 (e_value=2e-56) genomic_reference:SL2.40ch05 gene_region:62958028-62959831 transcript_region:SL2.40ch05:62958028..62959831+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003676,GO:0000166 NbS00060408g0004.1 protein AED:0.22 eAED:0.27 QI:0|0.35|0.4|0.86|0.57|0.73|15|67|447; (*GB) gi|356574323|ref|XP_003555298.1| (e_value=4e-133) PREDICTED: nucleobase-ascorbate transporter 4-like [Glycine max];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=1e-120) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=8e-122) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc10g049280.1.1 (e_value=1e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:40326100-40330621 transcript_region:SL2.40ch10:40326100..40330621- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00026628g0003.1 protein AED:0.35 eAED:0.36 QI:28|0.54|0.5|0.91|0.27|0.41|12|775|254; (*GB) gi|224129808|ref|XP_002320676.1| (e_value=4e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT1G59520.2 (e_value=1e-96) | Symbols: CW7 | CW7 | chr1:21861589-21865418 FORWARD LENGTH=319;; (*ITAG) Solyc04g077560.2.1 (e_value=2e-140) genomic_reference:SL2.40ch04 gene_region:60115384-60124520 transcript_region:SL2.40ch04:60115384..60124520- functional_description:"MKIAA0930 protein (Fragment) (AHRD V1 *-*- Q69ZV3_MOUSE); contains Interpro domain(s) IPR019141 Protein of unknown function DUF2045 "; NbS00006491g0009.1 protein AED:0.20 eAED:0.20 QI:9|0.25|0|1|0.5|0.6|5|0|551; (*GB) gi|225439014|ref|XP_002262789.1| (e_value=5e-156) PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera];; (*TAIR) AT5G10190.1 (e_value=9e-142) | Symbols: | Major facilitator superfamily protein | chr5:3199205-3201140 FORWARD LENGTH=488;; (*ITAG) Solyc05g051900.2.1 (e_value=5e-172) genomic_reference:SL2.40ch05 gene_region:61442000-61445024 transcript_region:SL2.40ch05:61442000..61445024- go_terms:GO:0005351 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 *--- Q392L2_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00006491g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|255569924|ref|XP_002525925.1| (e_value=1e-83) Flavonol 4'-sulfotransferase, putative [Ricinus communis];; (*SWP) sp|Q9STQ6|SOT3_ARATH (e_value=7e-53) Cytosolic sulfotransferase 3 OS=Arabidopsis thaliana GN=SOT3 PE=2 SV=1;; (*TAIR) AT4G26280.1 (e_value=5e-54) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13304721-13305722 REVERSE LENGTH=314;; (*ITAG) Solyc05g013010.2.1 (e_value=8e-77) genomic_reference:SL2.40ch05 gene_region:6125779-6127471 transcript_region:SL2.40ch05:6125779..6127471+ go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7LQL2_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00037677g0012.1 protein AED:0.10 eAED:0.13 QI:0|0.66|0.69|1|0.58|0.53|13|0|1736; (*GB) gi|359472635|ref|XP_003631178.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: 1-phosphatidylinositol-3-phosphate 5-kinase-like [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=7e-59) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT1G71010.1 (e_value=0.0) | Symbols: FAB1C | FORMS APLOID AND BINUCLEATE CELLS 1C | chr1:26782839-26788712 FORWARD LENGTH=1648;; (*ITAG) Solyc05g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2590255-2598199 transcript_region:SL2.40ch05:2590255..2598199+ go_terms:GO:0044267,GO:0008270,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 *--- D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0044267,GO:0008270,GO:0046488 NbS00037677g0004.1 protein AED:0.13 eAED:0.13 QI:492|0|0.5|0.5|1|1|2|0|132; (*GB) gi|225424195|ref|XP_002284189.1| (e_value=4e-23) PREDICTED: uncharacterized protein At1g66480 [Vitis vinifera];; (*ITAG) Solyc05g008210.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)"; NbS00017512g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.2|1|0|0.2|5|0|525; (*GB) gi|225459020|ref|XP_002283691.1| (e_value=4e-159) PREDICTED: oligopeptide transporter 2 [Vitis vinifera];; (*SWP) sp|O04514|OPT2_ARATH (e_value=1e-145) Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2;; (*TAIR) AT1G09930.1 (e_value=7e-147) | Symbols: ATOPT2, OPT2 | oligopeptide transporter 2 | chr1:3227490-3230043 REVERSE LENGTH=734;; (*ITAG) Solyc04g076750.1.1 (e_value=6e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00014111g0004.1 protein AED:0.34 eAED:0.40 QI:16|0.85|0.75|1|0.28|0.37|8|0|244; (*GB) gi|297815134|ref|XP_002875450.1| (e_value=1e-55) hypothetical protein ARALYDRAFT_484614 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G28370.1 (e_value=1e-55) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). | chr3:10620627-10623259 FORWARD LENGTH=292;; (*ITAG) Solyc02g087420.1.1 (e_value=2e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44453556-44456360 transcript_region:SL2.40ch02:44453556..44456360+ functional_description:"Genomic DNA chromosome 3 P1 clone MFJ20 (AHRD V1 ***- Q9LSJ7_ARATH)"; NbS00024647g0003.1 protein AED:0.27 eAED:0.29 QI:195|0.89|0.85|1|0.94|0.9|20|0|934; (*GB) gi|225465945|ref|XP_002272168.1| (e_value=0.0) PREDICTED: golgin candidate 6-like [Vitis vinifera];; (*SWP) sp|B0F9L4|GOGC6_ARATH (e_value=0.0) Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2;; (*TAIR) AT3G27530.1 (e_value=0.0) | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10193778-10199659 REVERSE LENGTH=914;; (*ITAG) Solyc08g081410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61641833-61651949 transcript_region:SL2.40ch08:61641833..61651949+ go_terms:GO:0016020,GO:0005488 functional_description:"General vesicular transport factor p115 (AHRD V1 *--- B0WXD3_CULQU); contains Interpro domain(s) IPR006955 Uso1/p115 like vesicle tethering protein, C-terminal "; GO:0016020,GO:0005488 NbS00020355g0003.1 protein AED:0.00 eAED:0.00 QI:639|1|0.5|1|1|1|2|0|268; (*ITAG) Solyc01g066890.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00028249g0014.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0.25|0.75|1|1|4|0|547; (*GB) gi|224138222|ref|XP_002322760.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06560.1 (e_value=2e-162) | Symbols: | Protein of unknown function, DUF593 | chr5:2003678-2005543 REVERSE LENGTH=518;; (*ITAG) Solyc10g081620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61992772-61996010 transcript_region:SL2.40ch10:61992772..61996010+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00028249g0011.1 protein AED:0.15 eAED:0.15 QI:111|0.33|0.5|0.75|0.33|0.5|4|675|264; (*GB) gi|255572893|ref|XP_002527378.1| (e_value=3e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G56820.1 (e_value=5e-48) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:21040061-21041711 REVERSE LENGTH=220;; (*ITAG) Solyc10g076930.1.1 (e_value=3e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59216637-59218670 transcript_region:SL2.40ch10:59216637..59218670- functional_description:"Cupin RmlC-type (AHRD V1 ***- A2Q1Y8_MEDTR)"; NbS00028249g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0.25|0.75|1|1|4|0|434; (*GB) gi|225463745|ref|XP_002265747.1| (e_value=6e-70) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LES3|AI5L2_ARATH (e_value=2e-53) ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1;; (*TAIR) AT3G56850.1 (e_value=1e-54) | Symbols: AREB3, DPBF3 | ABA-responsive element binding protein 3 | chr3:21046554-21047894 REVERSE LENGTH=297;; (*ITAG) Solyc10g076920.1.1 (e_value=3e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59213423-59214274 transcript_region:SL2.40ch10:59213423..59214274+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 **-- Q32WR6_MALDO)"; GO:0006355 NbS00028249g0015.1 protein AED:0.50 eAED:0.84 QI:0|0|0|0.5|1|1|4|0|130 NbS00059048g0004.1 protein AED:0.24 eAED:0.24 QI:487|0.92|0.92|1|0.69|0.64|14|445|610; (*GB) gi|83284015|gb|ABC01915.1| (e_value=0.0) vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum];; (*SWP) sp|P93026|VSR1_ARATH (e_value=0.0) Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2;; (*TAIR) AT3G52850.1 (e_value=0.0) | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623;; (*ITAG) Solyc10g074980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58012185-58017901 transcript_region:SL2.40ch10:58012185..58017901+ go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor (AHRD V1 **** Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005515,GO:0009940 NbS00021329g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|333|301; (*GB) gi|302144011|emb|CBI23116.3| (e_value=1e-131) unnamed protein product [Vitis vinifera];; (*SWP) sp|P28493|PR5_ARATH (e_value=5e-75) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT5G24620.1 (e_value=4e-122) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr5:8430918-8432289 FORWARD LENGTH=420;; (*ITAG) Solyc06g073000.2.1 (e_value=7e-162) genomic_reference:SL2.40ch06 gene_region:41379794-41381045 transcript_region:SL2.40ch06:41379794..41381045- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9FLU2_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00021329g0015.1 protein AED:0.20 eAED:0.20 QI:212|0.9|0.81|1|0.8|0.63|11|0|410; (*GB) gi|255540693|ref|XP_002511411.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GYT9|SIS3_ARATH (e_value=4e-168) E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2;; (*TAIR) AT3G47990.1 (e_value=3e-169) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358;; (*ITAG) Solyc06g071420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40330071-40335137 transcript_region:SL2.40ch06:40330071..40335137+ go_terms:GO:0004842 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00021329g0007.1 protein AED:0.32 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|224067836|ref|XP_002302557.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62150.1 (e_value=3e-18) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:24958325-24958633 FORWARD LENGTH=102;; (*ITAG) Solyc10g083410.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62558105-62558422 transcript_region:SL2.40ch10:62558105..62558422- go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7LUB2_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00006445g0005.1 protein AED:0.17 eAED:0.17 QI:693|0.71|0.75|1|0.85|0.75|8|508|431; (*GB) gi|353024583|gb|AEQ64271.1| (e_value=0.0) VTC2-like protein A [Solanum tuberosum];; (*SWP) sp|Q8RWE8|GGAP1_ARATH (e_value=0.0) GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1;; (*TAIR) AT4G26850.1 (e_value=0.0) | Symbols: VTC2 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | chr4:13499262-13501145 REVERSE LENGTH=442;; (*ITAG) Solyc06g073320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41566941-41570177 transcript_region:SL2.40ch06:41566941..41570177+ go_terms:GO:0080046,GO:0010475,GO:0080048 functional_description:"GDP-L-galactose phosphorylase 1"; GO:0080046,GO:0010475,GO:0080048 NbS00052644g0005.1 protein AED:0.16 eAED:0.16 QI:254|1|1|1|0.58|0.61|13|1833|314; (*GB) gi|11133837|sp|O04860.1|PP2A5_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP2A-5 catalytic subunit;; (*SWP) sp|O04860|PP2A5_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1;; (*TAIR) AT2G42500.1 (e_value=0.0) | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17698099-17701226 REVERSE LENGTH=313;; (*ITAG) Solyc01g073650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70267420-70275286 transcript_region:SL2.40ch01:70267420..70275286- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00052644g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.66|1|1|3|0|209; (*GB) gi|350538977|ref|NP_001233856.1| (e_value=1e-95) yfe37 protein [Solanum lycopersicum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=2e-43) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=5e-61) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc01g073640.2.1 (e_value=2e-98) genomic_reference:SL2.40ch01 gene_region:70261788-70263255 transcript_region:SL2.40ch01:70261788..70263255+ go_terms:GO:0008152,GO:0055114 functional_description:"Uncharacterized oxidoreductase Mb1385 (AHRD V1 ***- Y1385_MYCBO); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00061865g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|157042759|gb|ABV02031.1| (e_value=2e-94) sucrose responsive element binding factor 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=6e-62) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT5G67300.1 (e_value=5e-63) | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain protein r1 | chr5:26854109-26855026 FORWARD LENGTH=305;; (*ITAG) Solyc04g078420.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60755266-60756252 transcript_region:SL2.40ch04:60755266..60756252- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00032382g0005.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0|1|1|1|3|0|861; (*GB) gi|224129688|ref|XP_002328778.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O49545|BAME1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT5G65700.2 (e_value=0.0) | Symbols: BAM1 | Leucine-rich receptor-like protein kinase family protein | chr5:26281826-26284945 FORWARD LENGTH=1003;; (*ITAG) Solyc01g103530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83882217-83886479 transcript_region:SL2.40ch01:83882217..83886479+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00060868g0001.1 protein AED:0.12 eAED:1.00 QI:64|1|0.33|1|0|0|3|182|51 NbS00025118g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|358008884|gb|AET99101.1| (e_value=7e-85) dehydration-responsive element-binding protein DREB4 [Solanum tuberosum];; (*SWP) sp|Q8H1E4|RAP24_ARATH (e_value=2e-60) Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1;; (*TAIR) AT1G78080.1 (e_value=2e-61) | Symbols: RAP2.4 | related to AP2 4 | chr1:29364790-29365794 FORWARD LENGTH=334;; (*ITAG) Solyc04g072900.1.1 (e_value=7e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57461458-57462252 transcript_region:SL2.40ch04:57461458..57462252+ go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00029710g0010.1 protein AED:0.18 eAED:0.24 QI:156|0.4|0.66|1|0|0.5|6|127|285; (*GB) gi|255547612|ref|XP_002514863.1| (e_value=7e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|A2X5B4|SWT15_ORYSI (e_value=2e-48) Bidirectional sugar transporter SWEET15 OS=Oryza sativa subsp. indica GN=SWEET15 PE=3 SV=1;; (*TAIR) AT5G23660.1 (e_value=1e-48) | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285;; (*ITAG) Solyc05g024260.2.1 (e_value=2e-110) genomic_reference:SL2.40ch05 gene_region:30963570-30966033 transcript_region:SL2.40ch05:30963570..30966033+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00029710g0009.1 protein AED:0.25 eAED:0.25 QI:315|0.5|0.6|1|0.75|0.6|5|0|442; (*GB) gi|225425176|ref|XP_002265076.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=0.0) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G13160.1 (e_value=0.0) | Symbols: PBS1 | Protein kinase superfamily protein | chr5:4176854-4179682 FORWARD LENGTH=456;; (*ITAG) Solyc05g024290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00051854g0001.1 protein AED:0.16 eAED:0.16 QI:145|0.81|0.75|1|1|1|12|0|804; (*GB) gi|15221979|ref|NP_173357.1| (e_value=0.0) riboflavin synthase-like protein [Arabidopsis thaliana];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=0.0) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.1 (e_value=0.0) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=926;; (*ITAG) Solyc07g042460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52919322-52925426 transcript_region:SL2.40ch07:52919322..52925426- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein E (AHRD V1 **** B2D0N7_HORVD); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00007383g0010.1 protein AED:0.08 eAED:0.08 QI:317|0.77|0.63|1|0.83|0.68|19|0|1621; (*GB) gi|359481576|ref|XP_002278416.2| (e_value=0.0) PREDICTED: transcription elongation factor SPT6-like [Vitis vinifera];; (*SWP) sp|Q7KZ85|SPT6H_HUMAN (e_value=4e-137) Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2;; (*TAIR) AT1G65440.2 (e_value=0.0) | Symbols: GTB1 | global transcription factor group B1 | chr1:24306908-24314327 REVERSE LENGTH=1642;; (*ITAG) Solyc10g081020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61522744-61532431 transcript_region:SL2.40ch10:61522744..61532431- go_terms:GO:0006357,GO:0003723,GO:0006139 functional_description:"Transcription elongation factor SPT6 (AHRD V1 ***- A8NF94_COPC7); contains Interpro domain(s) IPR017072 Transcription elongation factor Spt6 "; GO:0006357,GO:0003723,GO:0006139 NbS00013891g0006.1 protein AED:0.22 eAED:0.22 QI:247|1|1|1|1|1|6|342|463; (*GB) gi|391868374|gb|AFM44934.1| (e_value=0.0) golden1-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SIV3|GLK1_ARATH (e_value=8e-77) Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2;; (*TAIR) AT2G20570.1 (e_value=6e-78) | Symbols: GPRI1, GLK1, ATGLK1 | GBF's pro-rich region-interacting factor 1 | chr2:8855486-8857522 FORWARD LENGTH=420;; (*ITAG) Solyc07g053630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59386217-59390311 transcript_region:SL2.40ch07:59386217..59390311- go_terms:GO:0003700,GO:0010843 functional_description:"Response regulator (AHRD V1 *--- A1A6A6_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700,GO:0010843 NbS00013891g0002.1 protein AED:0.19 eAED:0.67 QI:142|0|0.5|1|0|0.5|2|0|95 NbS00021993g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|224065308|ref|XP_002301767.1| (e_value=3e-77) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07480.1 (e_value=5e-72) | Symbols: | 2Fe-2S ferredoxin-like superfamily protein | chr3:2389026-2389505 FORWARD LENGTH=159;; (*ITAG) Solyc06g007630.1.1 (e_value=7e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1644026-1644511 transcript_region:SL2.40ch06:1644026..1644511+ go_terms:GO:0009055 functional_description:"Ferredoxin (AHRD V1 ***- B6TR21_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00021993g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|0.5|1|1|4|0|203; (*GB) gi|255583391|ref|XP_002532456.1| (e_value=2e-57) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT5G12230.1 (e_value=1e-46) | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3953915-3955285 REVERSE LENGTH=221;; (*ITAG) Solyc06g007660.1.1 (e_value=7e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1664976-1668200 transcript_region:SL2.40ch06:1664976..1668200- functional_description:"Genomic DNA chromosome 5 P1 clone MXC9 (AHRD V1 *-*- Q9FMP0_ARATH)"; NbS00021993g0016.1 protein AED:0.19 eAED:0.23 QI:0|1|0.77|1|0.5|0.66|9|279|380; (*GB) gi|77999273|gb|ABB16983.1| (e_value=5e-163) unknown [Solanum tuberosum];; (*SWP) sp|Q6UNT2|RL5_CUCSA (e_value=8e-151) 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1;; (*TAIR) AT5G39740.2 (e_value=7e-146) | Symbols: RPL5B | ribosomal protein L5 B | chr5:15903484-15905185 FORWARD LENGTH=301;; (*ITAG) Solyc06g082870.2.1 (e_value=2e-167) genomic_reference:SL2.40ch06 gene_region:44805209-44808923 transcript_region:SL2.40ch06:44805209..44808923+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic "; GO:0005840 NbS00021993g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|552; (*GB) gi|82621112|gb|ABB86244.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=2e-27) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc06g007640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1647012-1649536 transcript_region:SL2.40ch06:1647012..1649536- functional_description:"FRIGIDA-LIKE 2 (AHRD V1 *-*- A0SWL0_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00021993g0008.1 protein AED:0.76 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|74 NbS00002888g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|1531672|gb|AAC49651.1| (e_value=0.0) actin [Striga asiatica];; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc10g080500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61081201-61082937 transcript_region:SL2.40ch10:61081201..61082937+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00014589g0004.1 protein AED:0.30 eAED:0.31 QI:0|1|0.66|1|1|1|6|0|474; (*GB) gi|193290726|gb|ACF17671.1| (e_value=0.0) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|Q4ULG1|ODP2_RICFE (e_value=2e-58) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhC PE=3 SV=1;; (*TAIR) AT1G34430.1 (e_value=0.0) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00026717g0015.1 protein AED:0.00 eAED:0.00 QI:121|0.66|0.75|1|1|1|4|194|146; (*GB) gi|388784848|gb|AFK78108.1| (e_value=3e-73) snakin-2-like protein [Nicotiana tabacum];; (*SWP) sp|Q93X17|SNAK2_SOLTU (e_value=1e-23) Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1;; (*TAIR) AT5G14920.1 (e_value=1e-22) | Symbols: | Gibberellin-regulated family protein | chr5:4826598-4827761 FORWARD LENGTH=275;; (*ITAG) Solyc03g113910.2.1 (e_value=3e-65) genomic_reference:SL2.40ch03 gene_region:58001941-58004317 transcript_region:SL2.40ch03:58001941..58004317+ functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6SKV6_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00026717g0017.1 protein AED:0.04 eAED:0.04 QI:2777|1|1|1|0.5|0.66|3|141|247; (*GB) gi|359473325|ref|XP_003631292.1| (e_value=5e-20) PREDICTED: uncharacterized protein LOC100854597 [Vitis vinifera];; (*ITAG) Solyc03g113890.1.1 (e_value=4e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57988826-57989518 transcript_region:SL2.40ch03:57988826..57989518+ go_terms:GO:0055114,GO:0005622 functional_description:"Zinc finger protein 6 (AHRD V1 *-*- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0055114,GO:0005622 NbS00026717g0003.1 protein AED:0.02 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|588; (*GB) gi|356508645|ref|XP_003523065.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 38-like [Glycine max];; (*SWP) sp|Q0WUF6|PUB41_ARATH (e_value=3e-141) U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41 PE=2 SV=1;; (*TAIR) AT5G62560.1 (e_value=2e-142) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr5:25110073-25111752 FORWARD LENGTH=559;; (*ITAG) Solyc03g113870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57980937-57982523 transcript_region:SL2.40ch03:57980937..57982523+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 *--- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00026717g0019.1 protein AED:0.19 eAED:0.22 QI:17|0.85|0.75|1|1|0.87|8|0|363; (*GB) gi|225457134|ref|XP_002280345.1| (e_value=0.0) PREDICTED: probable alpha-mannosidase I MNS5 [Vitis vinifera];; (*SWP) sp|Q9SXC9|MNS5_ARATH (e_value=0.0) Probable alpha-mannosidase I MNS5 OS=Arabidopsis thaliana GN=MNS5 PE=2 SV=1;; (*TAIR) AT1G27520.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 47 protein | chr1:9558752-9562091 FORWARD LENGTH=574;; (*ITAG) Solyc03g113900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57991471-57997056 transcript_region:SL2.40ch03:57991471..57997056+ go_terms:GO:0051787,GO:0004569 functional_description:"Alpha mannosidase-like protein (AHRD V1 **** B0CY43_LACBS); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0051787,GO:0004569 NbS00001390g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|120; (*ITAG) Solyc11g068410.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00054514g0006.1 protein AED:0.14 eAED:0.14 QI:514|0.66|0.73|0.94|0.61|0.78|19|291|887; (*GB) gi|255548760|ref|XP_002515436.1| (e_value=5e-79) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q5U241|PD5BB_XENLA (e_value=1e-10) Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2;; (*TAIR) AT4G31880.1 (e_value=6e-76) | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873;; (*ITAG) Solyc03g116920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60238986-60249100 transcript_region:SL2.40ch03:60238986..60249100- functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 *--- PDS5A_CHICK)"; NbS00006174g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|428; (*GB) gi|225436208|ref|XP_002268337.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245378 [Vitis vinifera];; (*TAIR) AT5G17640.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr5:5811047-5812429 REVERSE LENGTH=432;; (*ITAG) Solyc08g044380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:31805915-31807347 transcript_region:SL2.40ch08:31805915..31807347+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00006174g0002.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|3|0|178; (*GB) gi|356600306|gb|AET22504.1| (e_value=1e-21) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=4e-16) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-13) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc11g020100.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:10137088-10139788 transcript_region:SL2.40ch11:10137088..10139788- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00055531g0003.1 protein AED:0.56 eAED:0.56 QI:359|0|0.5|0.5|0|0|2|0|28 NbS00008926g0010.1 protein AED:0.09 eAED:0.09 QI:391|1|1|1|1|1|8|263|434; (*GB) gi|255565587|ref|XP_002523783.1| (e_value=0.0) Vacuolar protein sorting-associated protein VPS4, putative [Ricinus communis];; (*SWP) sp|Q0VD48|VPS4B_BOVIN (e_value=4e-162) Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1;; (*TAIR) AT2G27600.1 (e_value=0.0) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00008926g0005.1 protein AED:0.58 eAED:0.92 QI:0|0|0|0.75|1|1|4|0|234; (*GB) gi|357449307|ref|XP_003594930.1| (e_value=2e-76) Vacuolar sorting protein 4b [Medicago truncatula];; (*SWP) sp|Q54PT2|VPS4_DICDI (e_value=2e-11) Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1;; (*TAIR) AT2G27600.1 (e_value=3e-37) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=2e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00014122g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.75|0.6|5|0|432; (*GB) gi|224067393|ref|XP_002302479.1| (e_value=1e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|O48786|C734A_ARATH (e_value=4e-53) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT1G75130.1 (e_value=4e-56) | Symbols: CYP721A1 | cytochrome P450, family 721, subfamily A, polypeptide 1 | chr1:28200073-28201911 REVERSE LENGTH=505;; (*ITAG) Solyc04g080100.2.1 (e_value=1e-152) genomic_reference:SL2.40ch04 gene_region:61967611-61970908 transcript_region:SL2.40ch04:61967611..61970908- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00014122g0004.1 protein AED:0.15 eAED:0.17 QI:0|0.57|0.37|0.87|1|1|8|369|590; (*GB) gi|225458346|ref|XP_002281672.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=3e-174) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=2e-175) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g089090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62655918-62659826 transcript_region:SL2.40ch12:62655918..62659826- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00022303g0007.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|3|0|136; (*ITAG) Solyc10g018620.1.1 (e_value=4e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:8819097-8821370 transcript_region:SL2.40ch10:8819097..8821370- functional_description:"Unknown Protein (AHRD V1)"; NbS00022303g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|303|361; (*GB) gi|344176312|emb|CCC21110.1| (e_value=0.0) phantastica [Nicotiana benthamiana];; (*SWP) sp|O80931|AS1_ARATH (e_value=5e-146) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1;; (*TAIR) AT2G37630.1 (e_value=4e-147) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00061268g0004.1 protein AED:0.43 eAED:0.47 QI:0|0.4|0.33|0.66|0.8|0.83|6|0|229; (*GB) gi|224062379|ref|XP_002300825.1| (e_value=5e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54W07|BUD32_DICDI (e_value=2e-63) Probable serine/threonine-protein kinase BUD32 homolog OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1;; (*TAIR) AT5G26110.1 (e_value=3e-133) | Symbols: | Protein kinase superfamily protein | chr5:9118239-9119352 REVERSE LENGTH=226;; (*ITAG) Solyc06g084160.2.1 (e_value=9e-154) genomic_reference:SL2.40ch06 gene_region:45662381-45666602 transcript_region:SL2.40ch06:45662381..45666602+ go_terms:GO:0004674,GO:0002039 functional_description:"Serine/threonine-protein kinase bud32 (EC 2.7.11.1) (AHRD V1 **** C8VPJ3_EMENI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0002039 NbS00037906g0003.1 protein AED:0.17 eAED:0.17 QI:464|1|1|1|1|1|5|123|241; (*GB) gi|89473698|gb|ABD72661.1| (e_value=6e-133) pollen tube RhoGDI2 [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=5e-104) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=3e-105) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc04g014760.2.1 (e_value=9e-149) genomic_reference:SL2.40ch04 gene_region:5004799-5008790 transcript_region:SL2.40ch04:5004799..5008790- go_terms:GO:0017048,GO:0005094 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 **** Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0017048,GO:0005094 NbC26055089g0004.1 protein AED:0.03 eAED:0.03 QI:215|1|0.66|1|0.5|0.66|3|0|262; (*GB) gi|3851640|gb|AAC72387.1| (e_value=1e-123) chaperone GrpE type 2 [Nicotiana tabacum];; (*SWP) sp|A7HZ43|GRPE_PARL1 (e_value=5e-12) Protein grpE OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=grpE PE=3 SV=1;; (*TAIR) AT4G26780.1 (e_value=1e-59) | Symbols: AR192 | Co-chaperone GrpE family protein | chr4:13485066-13486560 REVERSE LENGTH=327;; (*ITAG) Solyc12g014470.1.1 (e_value=4e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5447836-5450290 transcript_region:SL2.40ch12:5447836..5450290+ go_terms:GO:0005524,GO:0005507 functional_description:"Protein grpE (AHRD V1 *-*- Q1QRU3_NITHX); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005524,GO:0005507 NbS00015139g0001.1 protein AED:0.12 eAED:0.13 QI:656|1|0.66|1|0|0|3|0|329; (*GB) gi|225423965|ref|XP_002279257.1| (e_value=1e-52) PREDICTED: ethylene-responsive transcription factor ERF118 [Vitis vinifera];; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=1e-26) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=8e-28) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc05g009450.1.1 (e_value=8e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:3621438-3622463 transcript_region:SL2.40ch05:3621438..3622463- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00013086g0005.1 protein AED:0.28 eAED:0.28 QI:172|0.93|0.82|1|0.87|0.94|17|0|785; (*GB) gi|14599435|emb|CAC43859.1| (e_value=0.0) urease [Solanum tuberosum];; (*SWP) sp|P07374|UREA_CANEN (e_value=0.0) Urease OS=Canavalia ensiformis PE=1 SV=3;; (*TAIR) AT1G67550.1 (e_value=0.0) | Symbols: URE | urease | chr1:25312842-25316911 FORWARD LENGTH=838;; (*ITAG) Solyc05g014970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9174845-9187506 transcript_region:SL2.40ch05:9174845..9187506- go_terms:GO:0009039 functional_description:"Urease alpha subunit (AHRD V1 **** A3YCE1_9GAMM); contains Interpro domain(s) IPR008221 Urease IPR005848 Urease, alpha subunit "; GO:0009039 NbS00054990g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|0.66|0.75|4|0|334; (*GB) gi|224134258|ref|XP_002321775.1| (e_value=1e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMR0|PER60_ARATH (e_value=6e-104) Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1;; (*TAIR) AT5G22410.1 (e_value=5e-105) | Symbols: RHS18 | root hair specific 18 | chr5:7426347-7427722 FORWARD LENGTH=331;; (*ITAG) Solyc01g009410.2.1 (e_value=1e-162) genomic_reference:SL2.40ch01 gene_region:3612087-3615594 transcript_region:SL2.40ch01:3612087..3615594+ go_terms:GO:0004601 functional_description:"Peroxidase 57 (AHRD V1 **** D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00054990g0008.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|0.5|0.6|5|0|794; (*GB) gi|147807580|emb|CAN77670.1| (e_value=0.0) hypothetical protein VITISV_024978 [Vitis vinifera];; (*SWP) sp|Q8RWD6|FB271_ARATH (e_value=1e-136) F-box protein At5g39450 OS=Arabidopsis thaliana GN=At5g39450 PE=2 SV=1;; (*TAIR) AT5G39450.1 (e_value=8e-138) | Symbols: | F-box family protein | chr5:15786045-15787877 FORWARD LENGTH=579;; (*ITAG) Solyc04g076520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58997185-58999071 transcript_region:SL2.40ch04:58997185..58999071- functional_description:"F-box family protein (AHRD V1 ***- D7MJL3_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00025677g0015.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|383; (*GB) gi|224141233|ref|XP_002323979.1| (e_value=4e-119) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64230.1 (e_value=1e-82) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25692572-25693909 FORWARD LENGTH=379;; (*ITAG) Solyc01g105290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85274367-85276805 transcript_region:SL2.40ch01:85274367..85276805+ go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MSJ1 (AHRD V1 ***- Q9FMG2_ARATH)"; GO:0004867 NbS00025677g0023.1 protein AED:0.62 eAED:0.86 QI:0|0|0|0.5|0.66|0.75|4|0|283; (*GB) gi|8439543|gb|AAF74982.1|AF082892_1 (e_value=3e-23) cystathionine gamma-synthase isoform 2 [Solanum tuberosum];; (*TAIR) AT3G01120.1 (e_value=3e-12) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=6e-23) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00025677g0018.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0.75|1|1|1|4|821|299; (*GB) gi|224140795|ref|XP_002323764.1| (e_value=2e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=3e-58) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=2e-59) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105310.2.1 (e_value=2e-148) genomic_reference:SL2.40ch01 gene_region:85282545-85284363 transcript_region:SL2.40ch01:85282545..85284363- go_terms:GO:0006508,GO:0005737 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508,GO:0005737 NbS00025677g0024.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.2|1|0.25|0.2|5|286|342; (*GB) gi|224140795|ref|XP_002323764.1| (e_value=8e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=1e-80) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=1e-81) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85282545-85284363 transcript_region:SL2.40ch01:85282545..85284363- go_terms:GO:0006508,GO:0005737 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508,GO:0005737 NbS00025677g0026.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|1|0.75|0.6|5|636|322; (*GB) gi|356528042|ref|XP_003532614.1| (e_value=2e-82) PREDICTED: metacaspase-1-like [Glycine max];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=1e-62) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=8e-64) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105320.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:85287657-85289770 transcript_region:SL2.40ch01:85287657..85289770- go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00025677g0020.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|1|1|1|3|0|901; (*GB) gi|147772680|emb|CAN64936.1| (e_value=0.0) hypothetical protein VITISV_021553 [Vitis vinifera];; (*SWP) sp|Q9LME6|MBD8_ARATH (e_value=8e-30) Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1;; (*TAIR) AT1G22310.2 (e_value=6e-31) | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 | chr1:7881714-7883644 REVERSE LENGTH=524;; (*ITAG) Solyc01g105330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85291500-85296505 transcript_region:SL2.40ch01:85291500..85296505- go_terms:GO:0003677,GO:0005622 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9GUW9_POPTR); contains Interpro domain(s) IPR016177 DNA-binding, integrase-type "; GO:0003677,GO:0005622 NbS00016353g0001.1 protein AED:0.14 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|94|194; (*GB) gi|224136103|ref|XP_002327381.1| (e_value=2e-56) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9C9I2|ERF21_ARATH (e_value=1e-45) Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1;; (*TAIR) AT1G71450.1 (e_value=8e-47) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26927088-26927639 FORWARD LENGTH=183;; (*ITAG) Solyc11g042560.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:32341602-32342123 transcript_region:SL2.40ch11:32341602..32342123- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00016353g0013.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|3|399|112; (*GB) gi|225460129|ref|XP_002277692.1| (e_value=2e-64) PREDICTED: cytochrome c [Vitis vinifera];; (*SWP) sp|P00052|CYC_VIGRR (e_value=3e-65) Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1;; (*TAIR) AT1G22840.1 (e_value=1e-65) | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:8079384-8080286 FORWARD LENGTH=114;; (*ITAG) Solyc11g042420.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:31786354-31788004 transcript_region:SL2.40ch11:31786354..31788004+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00016353g0012.1 protein AED:0.31 eAED:0.31 QI:232|1|0.91|1|1|1|12|0|416; (*GB) gi|225427147|ref|XP_002277288.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 74 [Vitis vinifera];; (*SWP) sp|Q58D06|WDR74_BOVIN (e_value=1e-28) WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1;; (*TAIR) AT1G29320.1 (e_value=9e-156) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:10255355-10258238 FORWARD LENGTH=468;; (*ITAG) Solyc08g008160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2626584-2636165 transcript_region:SL2.40ch08:2626584..2636165- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 74 (AHRD V1 *--- C1BRU4_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00016353g0019.1 protein AED:0.08 eAED:0.08 QI:0|0.77|0.9|1|0.77|0.8|10|340|273; (*GB) gi|255569130|ref|XP_002525534.1| (e_value=5e-136) Protein phosphatase methylesterase, putative [Ricinus communis];; (*SWP) sp|Q58DN4|PPME1_BOVIN (e_value=4e-55) Protein phosphatase methylesterase 1 OS=Bos taurus GN=PPME1 PE=2 SV=3;; (*TAIR) AT4G10050.1 (e_value=2e-130) | Symbols: | esterase/lipase/thioesterase family protein | chr4:6284620-6287186 REVERSE LENGTH=350;; (*ITAG) Solyc11g042430.1.1 (e_value=7e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:31790631-31799565 transcript_region:SL2.40ch11:31790631..31799565- go_terms:GO:0051721,GO:0051722 functional_description:"Protein phosphatase methylesterase 1 (AHRD V1 **** B6TIL5_MAIZE); contains Interpro domain(s) IPR016812 Protein phosphatase methylesterase, eukaryotic "; GO:0051721,GO:0051722 NbS00016353g0015.1 protein AED:0.26 eAED:0.72 QI:0|0|0|1|0|0.5|2|0|66 NbS00038505g0002.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|2|0|396; (*GB) gi|225445352|ref|XP_002281621.1| (e_value=3e-150) PREDICTED: ornithine decarboxylase-like [Vitis vinifera];; (*SWP) sp|O22616|DCOR_SOLLC (e_value=4e-116) Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2;; (*TAIR) AT3G14390.1 (e_value=2e-21) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484;; (*ITAG) Solyc03g098310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54107768-54108961 transcript_region:SL2.40ch03:54107768..54108961+ go_terms:GO:0004586 functional_description:"Ornithine decarboxylase (AHRD V1 **** A2TBH8_THECC); contains Interpro domain(s) IPR002433 Ornithine decarboxylase "; GO:0004586 NbS00038505g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|78 NbS00038505g0004.1 protein AED:0.52 eAED:0.52 QI:0|0.33|0.25|0.5|1|1|4|269|68 NbS00016649g0010.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|3|215|552; (*GB) gi|359484991|ref|XP_002270183.2| (e_value=0.0) PREDICTED: sodium transporter HKT1-like [Vitis vinifera];; (*SWP) sp|Q6H501|HKT6_ORYSJ (e_value=4e-120) Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1;; (*TAIR) AT4G10310.1 (e_value=9e-109) | Symbols: HKT1, ATHKT1 | high-affinity K+ transporter 1 | chr4:6392008-6395667 FORWARD LENGTH=506;; (*ITAG) Solyc07g014690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5103988-5106992 transcript_region:SL2.40ch07:5103988..5106992+ go_terms:GO:0015081 functional_description:"Potassium transporter (AHRD V1 **** A0MNZ1_THEHA); contains Interpro domain(s) IPR003445 Cation transporter "; GO:0015081 NbS00052542g0006.1 protein AED:0.09 eAED:0.09 QI:47|0.85|0.75|1|0.57|0.5|8|1082|184; (*GB) gi|225463552|ref|XP_002267156.1| (e_value=4e-77) PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera];; (*SWP) sp|Q8W206|CSN6A_ARATH (e_value=6e-75) COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2;; (*TAIR) AT5G56280.1 (e_value=5e-76) | Symbols: CSN6A | COP9 signalosome subunit 6A | chr5:22783617-22785530 REVERSE LENGTH=317;; (*ITAG) Solyc10g005660.2.1 (e_value=9e-80) genomic_reference:SL2.40ch10 gene_region:536061-541079 transcript_region:SL2.40ch10:536061..541079+ go_terms:GO:0005515 functional_description:"COP9 signalosome subunit 6 (AHRD V1 ***- Q2A0N7_ORYSA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00052542g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|255576633|ref|XP_002529206.1| (e_value=9e-99) Regulator of ribonuclease activity A, putative [Ricinus communis];; (*SWP) sp|Q9FH13|RRAA3_ARATH (e_value=3e-95) Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1;; (*TAIR) AT5G56260.1 (e_value=3e-96) | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:22775549-22776049 REVERSE LENGTH=166;; (*ITAG) Solyc04g008280.2.1 (e_value=2e-82) genomic_reference:SL2.40ch04 gene_region:1954623-1957620 transcript_region:SL2.40ch04:1954623..1957620+ go_terms:GO:0008757 functional_description:"Regulator of ribonuclease activity A (AHRD V1 ***- B6T0A4_MAIZE); contains Interpro domain(s) IPR010203 Ribonuclease E inhibitor RraA "; GO:0008757 NbS00000711g0011.1 protein AED:0.20 eAED:0.21 QI:5|0.87|0.77|1|1|1|9|0|1076; (*GB) gi|255575120|ref|XP_002528465.1| (e_value=0.0) 2-oxoglutarate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q54JE4|ODO1_DICDI (e_value=0.0) 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1;; (*TAIR) AT3G55410.1 (e_value=0.0) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00000711g0012.1 protein AED:0.25 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|369; (*GB) gi|2346978|dbj|BAA21923.1| (e_value=8e-83) ZPT2-14 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=4e-33) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G28710.1 (e_value=9e-35) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc05g054650.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00000711g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|198; (*GB) gi|2346978|dbj|BAA21923.1| (e_value=1e-76) ZPT2-14 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=4e-36) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G37430.1 (e_value=3e-37) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr2:15706454-15706990 FORWARD LENGTH=178;; (*ITAG) Solyc05g054650.1.1 (e_value=4e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00011911g0002.1 protein AED:0.17 eAED:0.17 QI:124|1|1|1|0.66|0.5|4|442|212; (*GB) gi|255541154|ref|XP_002511641.1| (e_value=4e-102) structural molecule, putative [Ricinus communis];; (*SWP) sp|O81304|PAP11_ARATH (e_value=3e-92) Probable plastid-lipid-associated protein 11, chloroplastic OS=Arabidopsis thaliana GN=PAP11 PE=2 SV=1;; (*TAIR) AT4G00030.1 (e_value=2e-93) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr4:13565-14366 FORWARD LENGTH=212;; (*ITAG) Solyc10g018590.1.1 (e_value=3e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:8707052-8708451 transcript_region:SL2.40ch10:8707052..8708451+ go_terms:GO:0009507 functional_description:"Os04g0551700 protein (Fragment) (AHRD V1 ***- Q0JB74_ORYSJ); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00011160g0006.1 protein AED:0.18 eAED:0.26 QI:8|0.33|0.28|1|0.16|0.28|7|0|711; (*GB) gi|359484748|ref|XP_003633155.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=7e-134) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=5e-135) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=2e-170) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00029738g0001.1 protein AED:0.80 eAED:0.86 QI:0|0|0|0.5|1|1|4|0|82 NbS00012196g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|704; (*GB) gi|225427240|ref|XP_002278451.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LS25|PP420_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1;; (*TAIR) AT5G46580.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:18897510-18899645 REVERSE LENGTH=711;; (*ITAG) Solyc08g077140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58212909-58213721 transcript_region:SL2.40ch08:58212909..58213721+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013765g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.75|0.87|0.85|0.75|8|183|345; (*GB) gi|350537875|ref|NP_001233803.1| (e_value=0.0) pto-interacting protein 1 [Solanum lycopersicum];; (*SWP) sp|Q41328|PTI1_SOLLC (e_value=0.0) Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2;; (*TAIR) AT3G17410.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:5956601-5958882 FORWARD LENGTH=364;; (*ITAG) Solyc12g098980.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64649552-64653076 transcript_region:SL2.40ch12:64649552..64653076- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0006468 NbS00013765g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|1170938|sp|P43281.1|METK2_SOLLC (e_value=0.0) RecName: Full=S-adenosylmethionine synthase 2; Short=AdoMet synthase 2; AltName: Full=Methionine adenosyltransferase 2; Short=MAT 2;; (*SWP) sp|P43281|METK2_SOLLC (e_value=0.0) S-adenosylmethionine synthase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1;; (*TAIR) AT1G02500.2 (e_value=0.0) | Symbols: SAM1, SAM-1, MAT1, AtSAM1 | S-adenosylmethionine synthetase 1 | chr1:519037-520218 FORWARD LENGTH=393;; (*ITAG) Solyc12g099000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64658262-64659443 transcript_region:SL2.40ch12:64658262..64659443- go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00013765g0001.1 protein AED:0.39 eAED:0.40 QI:0|0|0.5|1|0|0.5|2|227|275; (*GB) gi|359495028|ref|XP_002268016.2| (e_value=3e-29) PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera];; (*SWP) sp|Q9LRR5|DRL21_ARATH (e_value=2e-21) Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1;; (*TAIR) AT3G14460.1 (e_value=2e-22) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc02g084450.2.1 (e_value=2e-30) genomic_reference:SL2.40ch02 gene_region:42119897-42122641 transcript_region:SL2.40ch02:42119897..42122641+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013765g0006.1 protein AED:0.47 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|359487192|ref|XP_003633531.1| (e_value=1e-15) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]; NbS00013765g0013.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|1|1|2|0|65 NbS00013765g0019.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|1|1|7|0|500; (*GB) gi|225450464|ref|XP_002280159.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At2g42960 [Vitis vinifera];; (*SWP) sp|Q9SJG2|Y2296_ARATH (e_value=0.0) Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1;; (*TAIR) AT1G56720.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:21263630-21265559 REVERSE LENGTH=492;; (*ITAG) Solyc12g098960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64645950-64648526 transcript_region:SL2.40ch12:64645950..64648526+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013765g0018.1 protein AED:0.21 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|524; (*GB) gi|225432159|ref|XP_002274904.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SQU6|PP216_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1;; (*TAIR) AT3G06430.1 (e_value=0.0) | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1956658-1958240 REVERSE LENGTH=486;; (*ITAG) Solyc12g098990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64654400-64657233 transcript_region:SL2.40ch12:64654400..64657233+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013765g0022.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|2|0|329; (*GB) gi|296081289|emb|CBI17733.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=3e-30) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G14460.1 (e_value=9e-27) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc02g084450.2.1 (e_value=4e-42) genomic_reference:SL2.40ch02 gene_region:42119897-42122641 transcript_region:SL2.40ch02:42119897..42122641+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013765g0025.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0|0|2|0|154; (*GB) gi|359487192|ref|XP_003633531.1| (e_value=4e-25) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera];; (*SWP) sp|Q9LRR5|DRL21_ARATH (e_value=9e-21) Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1;; (*TAIR) AT3G14460.1 (e_value=7e-22) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr3:4851990-4856264 REVERSE LENGTH=1424;; (*ITAG) Solyc01g106410.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013765g0024.1 protein AED:0.37 eAED:0.73 QI:0|0|0|1|0|0|2|0|79 NbS00056092g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.53|0.92|0.75|0.69|13|0|787; (*GB) gi|359481069|ref|XP_002264021.2| (e_value=0.0) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis vinifera];; (*SWP) sp|Q9H2U1|DHX36_HUMAN (e_value=0.0) Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2;; (*TAIR) AT2G35920.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995;; (*ITAG) Solyc01g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1541848-1551389 transcript_region:SL2.40ch01:1541848..1551389+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0042802 NbS00056092g0013.1 protein AED:0.23 eAED:0.41 QI:0|0.5|0|0.8|0.75|0.8|5|213|113; (*GB) gi|296089375|emb|CBI39147.3| (e_value=6e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G35920.1 (e_value=5e-32) | Symbols: | RNA helicase family protein | chr2:15075674-15080506 FORWARD LENGTH=995;; (*ITAG) Solyc01g006970.2.1 (e_value=2e-42) genomic_reference:SL2.40ch01 gene_region:1541848-1551389 transcript_region:SL2.40ch01:1541848..1551389+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR007502 Helicase-associated region "; GO:0042802 NbS00004104g0004.1 protein AED:0.06 eAED:0.06 QI:60|1|1|1|1|1|5|278|480; (*GB) gi|224098656|ref|XP_002311231.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55990.1 (e_value=0.0) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc03g096030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51288017-51290350 transcript_region:SL2.40ch03:51288017..51290350- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00004104g0006.1 protein AED:0.21 eAED:0.28 QI:950|0|0.5|1|1|1|2|34|132 NbS00013895g0003.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.25|1|1|4|0|96 NbS00013895g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|255571544|ref|XP_002526718.1| (e_value=2e-175) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|P93755|C3H30_ARATH (e_value=2e-159) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=1e-160) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g080260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60917085-60919178 transcript_region:SL2.40ch10:60917085..60919178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00013895g0001.1 protein AED:0.41 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|302398727|gb|ADL36658.1| (e_value=2e-46) C3HL domain class transcription factor [Malus x domestica];; (*SWP) sp|Q10EL1|C3H24_ORYSJ (e_value=7e-24) Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1;; (*TAIR) AT2G41900.1 (e_value=1e-24) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g080260.1.1 (e_value=1e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60917085-60919178 transcript_region:SL2.40ch10:60917085..60919178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00023410g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|1|0.66|0.75|4|0|490; (*GB) gi|13183173|gb|AAK15087.1|AF240004_1 (e_value=3e-167) 11S globulin [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=3e-122) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=1e-95) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g090150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65039694-65042890 transcript_region:SL2.40ch09:65039694..65042890- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00018129g0005.1 protein AED:0.21 eAED:0.24 QI:0|0.66|0.5|1|0.33|0.25|4|453|201; (*GB) gi|15963344|emb|CAC82731.1| (e_value=1e-57) CDK/cyclin inhibitor [Nicotiana tomentosiformis];; (*ITAG) Solyc02g090680.2.1 (e_value=1e-15) genomic_reference:SL2.40ch02 gene_region:46798032-46799468 transcript_region:SL2.40ch02:46798032..46799468+ go_terms:GO:0019210,GO:0005507 functional_description:"Cyclin-dependent kinase inhibitor 7 (AHRD V1 *-** KRP7_ARATH); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0019210,GO:0005507 NbS00020054g0007.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|232 NbS00020054g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.33|1|0.2|0.16|6|229|227; (*GB) gi|255554839|ref|XP_002518457.1| (e_value=2e-87) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G62250.1 (e_value=7e-77) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22995615-22997003 REVERSE LENGTH=267;; (*ITAG) Solyc02g080780.2.1 (e_value=5e-115) genomic_reference:SL2.40ch02 gene_region:39487698-39491256 transcript_region:SL2.40ch02:39487698..39491256- functional_description:"Unknown Protein (AHRD V1)"; NbS00037523g0007.1 protein AED:0.03 eAED:0.03 QI:776|0|0.66|1|0.5|0.33|3|472|427; (*GB) gi|307557077|gb|ADN51991.1| (e_value=7e-118) lanceolate [Solanum melongena];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=2e-63) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=2e-64) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc07g062680.1.1 (e_value=6e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62593583-62594785 transcript_region:SL2.40ch07:62593583..62594785+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *--* CYCLD_ANTML); contains Interpro domain(s) IPR017887 Transcription factor TCP subgroup "; GO:0003700 NbS00037523g0004.1 protein AED:0.26 eAED:0.27 QI:240|1|0.75|1|0.33|0.25|4|0|195; (*GB) gi|224116948|ref|XP_002317436.1| (e_value=4e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=6e-17) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT3G15050.1 (e_value=2e-46) | Symbols: IQD10 | IQ-domain 10 | chr3:5066879-5067892 REVERSE LENGTH=259;; (*ITAG) Solyc12g014130.1.1 (e_value=2e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4940650-4946027 transcript_region:SL2.40ch12:4940650..4946027+ functional_description:"Calmodulin binding protein (AHRD V1 **-- B6TIB2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00026511g0004.1 protein AED:0.00 eAED:0.00 QI:2349|1|1|1|1|1|2|364|84; (*GB) gi|255561866|ref|XP_002521942.1| (e_value=1e-40) 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis];; (*SWP) sp|Q93YP7|4HPT_ARATH (e_value=5e-30) 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1;; (*TAIR) AT4G23660.2 (e_value=4e-31) | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | chr4:12328086-12331359 REVERSE LENGTH=407;; (*ITAG) Solyc03g114300.2.1 (e_value=3e-47) genomic_reference:SL2.40ch03 gene_region:58362391-58366660 transcript_region:SL2.40ch03:58362391..58366660+ go_terms:GO:0008412 functional_description:"4-hydroxybenzoate octaprenyltransferase (AHRD V1 **** Q2RWW9_RHORT); contains Interpro domain(s) IPR006370 4-hydroxybenzoate polyprenyl transferase "; GO:0008412 NbS00026511g0002.1 protein AED:0.09 eAED:0.09 QI:168|0|0.5|1|0|0.5|2|0|511; (*GB) gi|356576887|ref|XP_003556561.1| (e_value=2e-92) PREDICTED: uncharacterized protein LOC100810934 [Glycine max];; (*TAIR) AT5G19900.1 (e_value=7e-93) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g015020.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:16607107-16609448 transcript_region:SL2.40ch01:16607107..16609448+ functional_description:"PRLI-interacting factor A (Fragment) (AHRD V1 *-*- Q9FUB4_ARATH)"; NbS00041986g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|0.9|1|0.88|0.8|10|320|464; (*GB) gi|225430017|ref|XP_002284157.1| (e_value=9e-173) PREDICTED: uncharacterized protein LOC100250699 [Vitis vinifera];; (*SWP) sp|P33399|LHP1_YEAST (e_value=1e-19) La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2;; (*TAIR) AT4G32720.2 (e_value=6e-141) | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789498 FORWARD LENGTH=404;; (*ITAG) Solyc08g068310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54615972-54621953 transcript_region:SL2.40ch08:54615972..54621953+ go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"RNA-binding La domain protein (AHRD V1 *--- B8NID1_ASPFN); contains Interpro domain(s) IPR014886 RNA binding motif "; GO:0003676,GO:0030529,GO:0000166 NbS00041986g0009.1 protein AED:0.19 eAED:0.27 QI:0|0|0|0.75|0|0.25|4|0|109; (*ITAG) ATCG00020.1 (e_value=2e-14) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=8e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00008363g0004.1 protein AED:0.10 eAED:0.10 QI:69|1|0.6|1|1|1|5|413|196; (*GB) gi|225460732|ref|XP_002267868.1| (e_value=7e-99) PREDICTED: uncharacterized protein LOC100255442 [Vitis vinifera];; (*SWP) sp|Q69ZC8|K1704_MOUSE (e_value=1e-12) Uncharacterized protein KIAA1704 OS=Mus musculus GN=Kiaa1704 PE=1 SV=2;; (*TAIR) AT1G65280.1 (e_value=6e-85) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:24245501-24248521 FORWARD LENGTH=588;; (*ITAG) Solyc11g018670.1.1 (e_value=5e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8891248-8908148 transcript_region:SL2.40ch11:8891248..8908148- go_terms:GO:0031072 functional_description:"DnaJ-like protein (AHRD V1 *-*- A8HMH6_CHLRE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00008363g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|1|1|6|0|414; (*GB) gi|356535705|ref|XP_003536384.1| (e_value=7e-98) PREDICTED: uncharacterized protein LOC100788598 [Glycine max];; (*TAIR) AT1G65280.1 (e_value=4e-73) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:24245501-24248521 FORWARD LENGTH=588;; (*ITAG) Solyc11g018670.1.1 (e_value=9e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8891248-8908148 transcript_region:SL2.40ch11:8891248..8908148- go_terms:GO:0031072 functional_description:"DnaJ-like protein (AHRD V1 *-*- A8HMH6_CHLRE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00029443g0003.1 protein AED:0.25 eAED:0.25 QI:64|1|1|1|1|1|5|228|88; (*GB) gi|225468340|ref|XP_002272246.1| (e_value=5e-54) PREDICTED: probable small nuclear ribonucleoprotein F [Vitis vinifera];; (*SWP) sp|Q9SUM2|RUXF_ARATH (e_value=7e-53) Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1;; (*TAIR) AT4G30220.1 (e_value=5e-54) | Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=88;; (*ITAG) Solyc10g081370.1.1 (e_value=7e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61786900-61789542 transcript_region:SL2.40ch10:61786900..61789542+ go_terms:GO:0005634 functional_description:"Small nuclear ribonucleoprotein F (AHRD V1 **-- B6TPP2_MAIZE); contains Interpro domain(s) IPR016487 Small nuclear ribonucleoprotein SmF "; GO:0005634 NbS00055770g0004.1 protein AED:0.03 eAED:0.03 QI:16|1|0.83|1|1|1|6|207|291; (*GB) gi|356552737|ref|XP_003544719.1| (e_value=8e-174) PREDICTED: pirin-like protein-like [Glycine max];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=1e-139) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G50590.1 (e_value=1e-138) | Symbols: | RmlC-like cupins superfamily protein | chr1:18732378-18734053 REVERSE LENGTH=310;; (*ITAG) Solyc12g014590.1.1 (e_value=8e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5578789-5581766 transcript_region:SL2.40ch12:5578789..5581766- functional_description:"Pirin (AHRD V1 ***- D7RJ70_CARPA); contains Interpro domain(s) IPR012093 Pirin "; NbS00060735g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.83|1|0.2|0|6|0|639; (*GB) gi|147785659|emb|CAN70913.1| (e_value=0.0) hypothetical protein VITISV_002996 [Vitis vinifera];; (*SWP) sp|Q570S7|CSLG1_ARATH (e_value=8e-81) Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1;; (*TAIR) AT4G24010.1 (e_value=6e-82) | Symbols: ATCSLG1, CSLG1 | cellulose synthase like G1 | chr4:12466391-12469760 FORWARD LENGTH=760;; (*ITAG) Solyc03g005450.2.1 (e_value=3e-172) genomic_reference:SL2.40ch03 gene_region:338588-346614 transcript_region:SL2.40ch03:338588..346614+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B2LWL9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00007139g0006.1 protein AED:0.34 eAED:0.41 QI:8|0.75|0.66|1|0.75|0.55|9|0|359; (*GB) gi|225455930|ref|XP_002276201.1| (e_value=1e-94) PREDICTED: uncharacterized protein LOC100259501 [Vitis vinifera];; (*TAIR) AT1G50910.1 (e_value=1e-53) | Symbols: | unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). | chr1:18867083-18869839 REVERSE LENGTH=500;; (*ITAG) Solyc07g064300.2.1 (e_value=2e-170) genomic_reference:SL2.40ch07 gene_region:63733504-63738297 transcript_region:SL2.40ch07:63733504..63738297+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007139g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|255538578|ref|XP_002510354.1| (e_value=2e-141) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=8e-128) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=6e-129) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc07g064310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63738696-63739817 transcript_region:SL2.40ch07:63738696..63739817- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00023748g0005.1 protein AED:0.07 eAED:0.07 QI:87|1|1|1|0.75|0.6|5|716|331; (*GB) gi|224119172|ref|XP_002318004.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT3G47850.1 (e_value=1e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:17654256-17656000 REVERSE LENGTH=352;; (*ITAG) Solyc06g071170.2.1 (e_value=7e-129) genomic_reference:SL2.40ch06 gene_region:40148289-40158074 transcript_region:SL2.40ch06:40148289..40158074+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015172g0019.1 protein AED:0.13 eAED:0.13 QI:77|0.83|0.85|1|0.83|1|7|455|312; (*GB) gi|255579735|ref|XP_002530706.1| (e_value=1e-125) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8S9M1|PAP13_ARATH (e_value=2e-112) Probable plastid-lipid-associated protein 13, chloroplastic OS=Arabidopsis thaliana GN=PAP13 PE=1 SV=2;; (*TAIR) AT2G42130.4 (e_value=1e-113) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:17566242-17567916 FORWARD LENGTH=299;; (*ITAG) Solyc03g062790.2.1 (e_value=7e-169) genomic_reference:SL2.40ch03 gene_region:29619693-29634138 transcript_region:SL2.40ch03:29619693..29634138- functional_description:"cDNA clone 002-130-C06 full insert sequence (AHRD V1 **-- B7F0E5_ORYSJ)"; NbS00015172g0018.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|0.5|0.42|7|251|201; (*GB) gi|357509957|ref|XP_003625267.1| (e_value=1e-123) Nudix hydrolase [Medicago truncatula];; (*SWP) sp|P93740|NUD23_ARATH (e_value=4e-118) Nudix hydrolase 23, chloroplastic OS=Arabidopsis thaliana GN=NUDT23 PE=1 SV=2;; (*TAIR) AT2G42070.1 (e_value=3e-119) | Symbols: ATNUDT23, ATNUDX23, NUDX23 | nudix hydrolase homolog 23 | chr2:17549669-17551066 REVERSE LENGTH=280;; (*ITAG) Solyc03g062830.2.1 (e_value=2e-141) genomic_reference:SL2.40ch03 gene_region:29696132-29708002 transcript_region:SL2.40ch03:29696132..29708002- go_terms:GO:0047884 functional_description:"Nudix hydrolase 23 (AHRD V1 *-*- B6TED1_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0047884 NbS00015172g0017.1 protein AED:0.26 eAED:0.26 QI:124|1|1|1|0.83|1|7|471|261; (*GB) gi|255579747|ref|XP_002530712.1| (e_value=1e-58) heat shock protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G42080.1 (e_value=4e-44) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:17553409-17555475 REVERSE LENGTH=263;; (*ITAG) Solyc03g063350.2.1 (e_value=9e-64) genomic_reference:SL2.40ch03 gene_region:31765948-31771212 transcript_region:SL2.40ch03:31765948..31771212- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A3WC91_9SPHN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00015172g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|69 NbS00015172g0102.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|384 NbS00000307g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|20056|emb|CAA36790.1| (e_value=5e-115) unnamed protein product [Nicotiana tabacum];; (*SWP) sp|P07053|PR1B_TOBAC (e_value=3e-116) Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G33720.1 (e_value=2e-63) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00000307g0008.1 protein AED:0.14 eAED:0.14 QI:16|0.5|0.33|0.66|1|1|3|0|61; (*GB) gi|357453443|ref|XP_003596998.1| (e_value=9e-22) Homeobox-leucine zipper protein ROC7 [Medicago truncatula];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=1e-22) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=9e-24) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc03g031760.2.1 (e_value=1e-23) genomic_reference:SL2.40ch03 gene_region:8510446-8514148 transcript_region:SL2.40ch03:8510446..8514148- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00000307g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.2|1|1|1|5|214|274; (*GB) gi|388504058|gb|AFK40095.1| (e_value=2e-74) unknown [Medicago truncatula];; (*TAIR) AT1G44542.1 (e_value=3e-75) | Symbols: | Cyclase family protein | chr1:16865145-16866573 REVERSE LENGTH=271;; (*ITAG) Solyc10g049970.1.1 (e_value=4e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:42766896-42768518 transcript_region:SL2.40ch10:42766896..42768518+ go_terms:GO:0004061,GO:0009975 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061,GO:0009975 NbS00019693g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|211; (*GB) gi|139538863|gb|ABO77958.1| (e_value=3e-108) p-coumaroyl quinate/shikimate 3'-hydroxylase [Coffea canephora];; (*SWP) sp|O22203|C98A3_ARATH (e_value=3e-101) Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1;; (*TAIR) AT2G40890.1 (e_value=3e-102) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc10g078220.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59398535-59400904 transcript_region:SL2.40ch10:59398535..59400904- go_terms:GO:0046409 functional_description:"Cytochrome P450"; GO:0046409 NbS00019693g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|85068608|gb|ABC69384.1| (e_value=2e-45) CYP98A33v1 [Nicotiana tabacum];; (*SWP) sp|O22203|C98A3_ARATH (e_value=4e-37) Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1;; (*TAIR) AT2G40890.1 (e_value=3e-38) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc10g078230.1.1 (e_value=5e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59404043-59406415 transcript_region:SL2.40ch10:59404043..59406415- go_terms:GO:0046409 functional_description:"Cytochrome P450"; GO:0046409 NbS00000457g0003.1 protein AED:0.44 eAED:0.53 QI:210|0.5|0.66|1|0|0.33|3|0|63; (*GB) gi|334351805|dbj|BAK32933.1| (e_value=1e-15) mid1-complementing activity 2 [Nicotiana tabacum];; (*ITAG) Solyc02g083540.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:41475623-41481382 transcript_region:SL2.40ch02:41475623..41481382- functional_description:"Protein kinase domain containing protein (AHRD V1 *--- Q2R001_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00020719g0006.1 protein AED:0.00 eAED:0.00 QI:76|1|1|1|0|1|2|146|79 NbS00020719g0007.1 protein AED:0.18 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|167; (*GB) gi|224114057|ref|XP_002316655.1| (e_value=6e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62570.2 (e_value=3e-20) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113970.2.1 (e_value=5e-55) genomic_reference:SL2.40ch03 gene_region:58080123-58085965 transcript_region:SL2.40ch03:58080123..58085965+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **** B6TKI3_MAIZE); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00056322g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|2|232|125; (*GB) gi|312283105|dbj|BAJ34418.1| (e_value=1e-47) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=1e-47) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=7e-49) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc09g075150.2.1 (e_value=2e-53) genomic_reference:SL2.40ch09 gene_region:62444486-62447482 transcript_region:SL2.40ch09:62444486..62447482+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00019006g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|0.5|0.33|3|0|630; (*GB) gi|255565550|ref|XP_002523765.1| (e_value=0.0) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=0.0) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1;; (*TAIR) AT1G03050.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599;; (*ITAG) Solyc01g104870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84950354-84952688 transcript_region:SL2.40ch01:84950354..84952688+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00044905g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|1|0.8|0.83|6|650|240; (*GB) gi|224109570|ref|XP_002333234.1| (e_value=4e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VA3|CYC6_ARATH (e_value=2e-67) Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ PE=1 SV=1;; (*TAIR) AT5G45040.1 (e_value=1e-68) | Symbols: | Cytochrome c | chr5:18175566-18176851 REVERSE LENGTH=175;; (*ITAG) Solyc02g068930.2.1 (e_value=5e-99) genomic_reference:SL2.40ch02 gene_region:33403771-33408543 transcript_region:SL2.40ch02:33403771..33408543- go_terms:GO:0020037 functional_description:"Cytochrome c6 (AHRD V1 ***- D7MKY9_ARALY); contains Interpro domain(s) IPR003088 Cytochrome c, class I "; GO:0020037 NbS00044905g0001.1 protein AED:0.11 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|221; (*ITAG) Solyc02g068990.2.1 (e_value=2e-36) genomic_reference:SL2.40ch02 gene_region:33516017-33518244 transcript_region:SL2.40ch02:33516017..33518244- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00044905g0008.1 protein AED:0.35 eAED:0.37 QI:2|0|0.5|1|0|0|2|0|86; (*ITAG) Solyc03g044790.2.1 (e_value=3e-14) genomic_reference:SL2.40ch03 gene_region:14505298-14507543 transcript_region:SL2.40ch03:14505298..14507543- go_terms:GO:0080031,GO:0080030 functional_description:"Alpha-hydroxynitrile lyase (AHRD V1 **-- O49897_MANES); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00006637g0011.1 protein AED:0.34 eAED:0.34 QI:247|0.76|0.77|0.94|0.64|0.77|18|0|839; (*GB) gi|297833648|ref|XP_002884706.1| (e_value=0.0) hypothetical protein ARALYDRAFT_317700 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8K2V6|IPO11_MOUSE (e_value=4e-72) Importin-11 OS=Mus musculus GN=Ipo11 PE=1 SV=1;; (*TAIR) AT3G08960.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2730405-2736762 REVERSE LENGTH=1010;; (*ITAG) Solyc09g005130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:78471-95915 transcript_region:SL2.40ch09:78471..95915+ go_terms:GO:0006886,GO:0005488 functional_description:"Importin-11 (AHRD V1 ***- B0WJI0_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00006637g0012.1 protein AED:0.17 eAED:0.17 QI:126|1|0.85|1|1|1|7|27|574; (*GB) gi|255579312|ref|XP_002530501.1| (e_value=0.0) heat shock protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q5RCM7|DJC16_PONAB (e_value=7e-20) DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1;; (*TAIR) AT3G08970.1 (e_value=1e-153) | Symbols: ATERDJ3A, TMS1 | DNAJ heat shock N-terminal domain-containing protein | chr3:2737589-2740265 FORWARD LENGTH=572;; (*ITAG) Solyc09g005120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:70252-75607 transcript_region:SL2.40ch09:70252..75607- go_terms:GO:0016491 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- C7DHA9_9EURY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0016491 NbS00009571g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.91|0.76|0.92|1|1|13|0|452; (*GB) gi|225432012|ref|XP_002279647.1| (e_value=0.0) PREDICTED: galactokinase [Vitis vinifera];; (*SWP) sp|Q9SEE5|GALK1_ARATH (e_value=0.0) Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2;; (*TAIR) AT3G06580.1 (e_value=0.0) | Symbols: GAL1, GALK | Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496;; (*ITAG) Solyc01g058390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:59252697-59258614 transcript_region:SL2.40ch01:59252697..59258614- go_terms:GO:0004335 functional_description:"Galactokinase (AHRD V1 **** B6V3B9_CUCME); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0004335 NbS00009571g0012.1 protein AED:0.27 eAED:0.29 QI:0|0.76|0.72|1|0.64|0.66|18|1022|690; (*GB) gi|359477208|ref|XP_002279515.2| (e_value=0.0) PREDICTED: flowering time control protein FCA [Vitis vinifera];; (*SWP) sp|O04425|FCA_ARATH (e_value=9e-124) Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2;; (*TAIR) AT4G16280.4 (e_value=2e-124) | Symbols: | RNA binding;abscisic acid binding | chr4:9207164-9214187 REVERSE LENGTH=672;; (*ITAG) Solyc01g058450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:59383756-59401962 transcript_region:SL2.40ch01:59383756..59401962+ go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B6UFA0_MAIZE); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003723 NbS00023489g0005.1 protein AED:0.32 eAED:0.32 QI:367|0.85|0.87|1|0.28|0.37|8|203|290; (*GB) gi|77403669|dbj|BAE46413.1| (e_value=5e-138) MYB-CC type transfactor [Solanum tuberosum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=4e-21) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT2G01060.1 (e_value=2e-80) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286;; (*ITAG) Solyc11g022470.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14018635-14021154 transcript_region:SL2.40ch11:14018635..14021154+ go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 **-- Q3LHL3_SOLTU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00029128g0015.1 protein AED:0.19 eAED:0.19 QI:301|0.66|0.5|1|1|1|4|0|305; (*GB) gi|356540815|ref|XP_003538880.1| (e_value=5e-128) PREDICTED: thaumatin-like protein 1-like [Glycine max];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=2e-84) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G36010.2 (e_value=2e-118) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:17039472-17040976 REVERSE LENGTH=301;; (*ITAG) Solyc02g083790.2.1 (e_value=6e-171) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00029128g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.66|1|0.87|0.77|9|1155|348; (*GB) gi|6899972|emb|CAB71293.1| (e_value=0.0) chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum];; (*SWP) sp|O04977|FENR1_TOBAC (e_value=0.0) Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic OS=Nicotiana tabacum GN=PETH PE=2 SV=1;; (*TAIR) AT1G20020.2 (e_value=0.0) | Symbols: ATLFNR2 | ferredoxin-NADP(+)-oxidoreductase 2 | chr1:6942851-6944868 FORWARD LENGTH=350;; (*ITAG) Solyc02g062130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28283170-28286369 transcript_region:SL2.40ch02:28283170..28286369- go_terms:GO:0008266,GO:0003959 functional_description:"Ferredoxin--NADP reductase (AHRD V1 ***- D7MN04_ARALY); contains Interpro domain(s) IPR012146 Ferredoxin--NADP reductase "; GO:0008266,GO:0003959 NbS00029128g0013.1 protein AED:0.28 eAED:0.43 QI:0|0|0|1|0|0|3|0|178; (*GB) gi|52220867|ref|YP_087022.1| (e_value=2e-60) NADH dehydrogenase subunit 7 [Panax ginseng];; (*SWP) sp|Q68RV0|NDHH_PANGI (e_value=5e-62) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Panax ginseng GN=ndhH PE=3 SV=1;; (*ITAG) ATCG01110.1 (e_value=8e-42) | Symbols: NDHH | NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393;; (*ITAG) Solyc08g022170.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:12709979-12710386 transcript_region:SL2.40ch08:12709979..12710386- functional_description:"NADH quinone oxidoreductase subunit 7 (AHRD V1 ***- D2BHX7_DEHSV)"; NbS00029128g0012.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|348659075|gb|AEP82775.1| (e_value=4e-37) terpene synthase [Solanum lycopersicum];; (*SWP) sp|O65323|5EAS_CAPAN (e_value=5e-28) 5-epiaristolochene synthase OS=Capsicum annuum GN=EAS PE=1 SV=1;; (*TAIR) AT1G70080.1 (e_value=7e-20) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:26394669-26397565 REVERSE LENGTH=611;; (*ITAG) Solyc04g051620.1.1 (e_value=3e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50057599-50060555 transcript_region:SL2.40ch04:50057599..50060555- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00051975g0003.1 protein AED:0.24 eAED:0.25 QI:357|1|0.87|1|0.85|0.87|8|0|498; (*GB) gi|255547081|ref|XP_002514598.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-83) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G15740.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc03g114730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58687413-58692533 transcript_region:SL2.40ch03:58687413..58692533- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00030230g0005.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.57|1|0.5|0.57|7|0|374; (*GB) gi|356526467|ref|XP_003531839.1| (e_value=7e-167) PREDICTED: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like [Glycine max];; (*SWP) sp|Q8T9S7|PTEN_DICDI (e_value=2e-54) Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1;; (*TAIR) AT5G39400.1 (e_value=2e-158) | Symbols: ATPTEN1, PTEN1 | Calcium/lipid-binding (CaLB) phosphatase | chr5:15766251-15767922 FORWARD LENGTH=412;; (*ITAG) Solyc03g013310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:4068151-4071026 transcript_region:SL2.40ch03:4068151..4071026- go_terms:GO:0016314 functional_description:"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (AHRD V1 *--* PTEN_DICDI); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; GO:0016314 NbS00041503g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|527; (*GB) gi|224131788|ref|XP_002328108.1| (e_value=2e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=7e-20) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT3G11590.1 (e_value=1e-71) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc06g074190.2.1 (e_value=4e-150) genomic_reference:SL2.40ch06 gene_region:42262927-42265722 transcript_region:SL2.40ch06:42262927..42265722- functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00041503g0011.1 protein AED:0.08 eAED:0.09 QI:6|1|0.75|1|1|1|4|0|380; (*GB) gi|147832851|emb|CAN63961.1| (e_value=7e-103) hypothetical protein VITISV_028424 [Vitis vinifera];; (*SWP) sp|Q94F58|NAC89_ARATH (e_value=2e-75) NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1;; (*TAIR) AT2G27300.1 (e_value=1e-76) | Symbols: ANAC040, NTL8 | NTM1-like 8 | chr2:11680417-11681955 REVERSE LENGTH=335;; (*ITAG) Solyc06g074170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42254209-42257940 transcript_region:SL2.40ch06:42254209..42257940- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HQ28_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012283g0003.1 protein AED:0.05 eAED:0.08 QI:974|1|0.5|1|0|0|2|0|482; (*GB) gi|225443918|ref|XP_002271548.1| (e_value=2e-96) PREDICTED: transcription factor TCP2-like [Vitis vinifera];; (*SWP) sp|Q93V43|TCP2_ARATH (e_value=2e-35) Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1;; (*TAIR) AT4G18390.2 (e_value=2e-36) | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365;; (*ITAG) Solyc08g048390.1.1 (e_value=7e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:39810608-39811771 transcript_region:SL2.40ch08:39810608..39811771+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-** CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00012283g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|1712|392; (*GB) gi|297740746|emb|CBI30928.3| (e_value=6e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C534|FB19_ARATH (e_value=9e-135) F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2 SV=1;; (*TAIR) AT1G30200.1 (e_value=7e-136) | Symbols: | F-box family protein | chr1:10625147-10626286 FORWARD LENGTH=379;; (*ITAG) Solyc08g048430.2.1 (e_value=8e-113) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012283g0013.1 protein AED:0.05 eAED:0.05 QI:0|0|0.33|1|1|0.66|3|0|450; (*GB) gi|224114692|ref|XP_002316830.1| (e_value=6e-106) predicted protein [Populus trichocarpa];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=1e-21) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT3G15010.2 (e_value=2e-93) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc02g021560.2.1 (e_value=6e-180) genomic_reference:SL2.40ch02 gene_region:13906095-13908491 transcript_region:SL2.40ch02:13906095..13908491- go_terms:GO:0005515 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 **-- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00012283g0010.1 protein AED:0.08 eAED:0.08 QI:163|1|1|1|1|1|3|382|337; (*GB) gi|225440382|ref|XP_002267244.1| (e_value=3e-155) PREDICTED: p21-activated protein kinase-interacting protein 1-like [Vitis vinifera];; (*SWP) sp|Q6TNS2|PK1IP_DANRE (e_value=3e-46) p21-activated protein kinase-interacting protein 1-like OS=Danio rerio GN=pak1ip1 PE=2 SV=1;; (*TAIR) AT1G65030.1 (e_value=3e-137) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:24156798-24158511 FORWARD LENGTH=345;; (*ITAG) Solyc02g078830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38062222-38065425 transcript_region:SL2.40ch02:38062222..38065425+ go_terms:GO:0005515,GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IZJ6_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00032001g0001.1 protein AED:0.33 eAED:0.35 QI:0|0|0.5|1|0|0.5|2|63|119; (*GB) gi|356571338|ref|XP_003553835.1| (e_value=9e-22) PREDICTED: chaperone protein dnaJ 72-like [Glycine max];; (*SWP) sp|Q0WTI8|DNJ72_ARATH (e_value=1e-12) Chaperone protein dnaJ 72 OS=Arabidopsis thaliana GN=ATJ72 PE=2 SV=1;; (*TAIR) AT2G41000.2 (e_value=5e-14) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:17111673-17112532 FORWARD LENGTH=211;; (*ITAG) Solyc10g081220.1.1 (e_value=1e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:61660250-61662784 transcript_region:SL2.40ch10:61660250..61662784+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2S949_BACCE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00032001g0002.1 protein AED:0.10 eAED:0.71 QI:0|-1|0|1|-1|1|1|0|417; (*GB) gi|388490792|gb|AFK33462.1| (e_value=1e-144) unknown [Medicago truncatula];; (*SWP) sp|O64668|PSNA_ARATH (e_value=1e-96) Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1;; (*TAIR) AT1G08700.1 (e_value=1e-97) | Symbols: PS1 | Presenilin-1 | chr1:2769885-2771348 REVERSE LENGTH=453;; (*ITAG) Solyc10g081230.1.1 (e_value=9e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61664244-61665533 transcript_region:SL2.40ch10:61664244..61665533- go_terms:GO:0016021 functional_description:"Presenilin (AHRD V1 ***- B6TCG9_MAIZE); contains Interpro domain(s) IPR001108 Peptidase A22A, presenilin "; GO:0016021 NbS00007654g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|462; (*GB) gi|30016900|gb|AAP04000.1| (e_value=0.0) EIL4 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=2e-95) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=2e-96) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc06g073720.1.1 (e_value=3e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41868757-41870589 transcript_region:SL2.40ch06:41868757..41870589- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00007654g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|337273025|gb|AEI70250.1| (e_value=5e-76) auxin response factor 10 [Solanum lycopersicum];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=3e-64) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT2G28350.1 (e_value=2e-62) | Symbols: ARF10 | auxin response factor 10 | chr2:12114331-12116665 FORWARD LENGTH=693;; (*ITAG) Solyc11g069500.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51188434-51191569 transcript_region:SL2.40ch11:51188434..51191569- go_terms:GO:0046982,GO:0005516 functional_description:"Auxin response factor 16 (AHRD V1 ***- D9IVB4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046982,GO:0005516 NbC25883578g0003.1 protein AED:0.18 eAED:0.18 QI:6|1|1|1|1|1|2|884|265; (*GB) gi|225456024|ref|XP_002279751.1| (e_value=9e-43) PREDICTED: uncharacterized protein LOC100245764 [Vitis vinifera];; (*TAIR) AT1G73760.1 (e_value=4e-26) | Symbols: | RING/U-box superfamily protein | chr1:27739366-27741161 REVERSE LENGTH=367;; (*ITAG) Solyc03g118840.2.1 (e_value=6e-95) genomic_reference:SL2.40ch03 gene_region:61692728-61696244 transcript_region:SL2.40ch03:61692728..61696244+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001941g0012.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|7|294|487; (*GB) gi|359475174|ref|XP_003631609.1| (e_value=0.0) PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500-like [Vitis vinifera];; (*SWP) sp|Q6NKZ9|Y4345_ARATH (e_value=0.0) Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1;; (*TAIR) AT4G34500.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:16488005-16490792 REVERSE LENGTH=437;; (*ITAG) Solyc01g109590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88251015-88255222 transcript_region:SL2.40ch01:88251015..88255222- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001941g0013.1 protein AED:0.28 eAED:0.35 QI:0|0.7|0.81|1|1|1|11|0|515; (*GB) gi|359475312|ref|XP_003631649.1| (e_value=0.0) PREDICTED: adenylyl cyclase-associated protein 1-like [Vitis vinifera];; (*SWP) sp|Q4R4I6|CAP1_MACFA (e_value=8e-67) Adenylyl cyclase-associated protein 1 OS=Macaca fascicularis GN=CAP1 PE=2 SV=3;; (*TAIR) AT4G34490.1 (e_value=0.0) | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated protein 1 | chr4:16484896-16487355 REVERSE LENGTH=476;; (*ITAG) Solyc01g109580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88245642-88249506 transcript_region:SL2.40ch01:88245642..88249506- go_terms:GO:0003785 functional_description:"Adenylyl cyclase-associated protein (AHRD V1 ***- B9H0Q2_POPTR); contains Interpro domain(s) IPR001837 Adenylate cyclase-associated CAP "; GO:0003785 NbS00001941g0113.1 protein AED:0.58 eAED:0.58 QI:0|0.5|0|0.66|1|1|3|0|523 NbS00001941g0118.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.71|0.85|0.83|0.85|7|0|186 NbS00001941g0117.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|3|0|335 NbS00024675g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.83|1|1|1|6|309|565; (*GB) gi|225463242|ref|XP_002270360.1| (e_value=0.0) PREDICTED: 4-coumarate--CoA ligase-like 6 [Vitis vinifera];; (*SWP) sp|Q84P24|4CLL6_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2;; (*TAIR) AT4G19010.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr4:10411715-10414221 REVERSE LENGTH=566;; (*ITAG) Solyc08g076300.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57430047-57434352 transcript_region:SL2.40ch08:57430047..57434352- go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9GZT7_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00036192g0001.1 protein AED:0.06 eAED:0.06 QI:299|1|1|1|0.33|0|4|492|381; (*GB) gi|296082919|emb|CBI22220.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G39785.2 (e_value=2e-21) | Symbols: | Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=607;; (*ITAG) Solyc02g067350.2.1 (e_value=7e-123) genomic_reference:SL2.40ch02 gene_region:32132500-32135607 transcript_region:SL2.40ch02:32132500..32135607+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00024041g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|0|0|2|0|98; (*GB) gi|225461399|ref|XP_002284849.1| (e_value=9e-41) PREDICTED: nucleolar GTP-binding protein 2-like [Vitis vinifera];; (*SWP) sp|Q13823|NOG2_HUMAN (e_value=4e-15) Nucleolar GTP-binding protein 2 OS=Homo sapiens GN=GNL2 PE=1 SV=1;; (*TAIR) AT1G52980.1 (e_value=4e-33) | Symbols: | GTP-binding family protein | chr1:19737493-19740201 FORWARD LENGTH=576;; (*ITAG) Solyc07g063270.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:63008778-63014711 transcript_region:SL2.40ch07:63008778..63014711- go_terms:GO:0005515,GO:0003924 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B6TMG1_MAIZE); contains Interpro domain(s) IPR012971 NGP1, N-terminal "; GO:0005515,GO:0003924 NbS00000894g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|382|309; (*GB) gi|225438803|ref|XP_002283219.1| (e_value=2e-104) PREDICTED: probable WRKY transcription factor 7-like [Vitis vinifera];; (*SWP) sp|O22176|WRK15_ARATH (e_value=2e-68) Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=2 SV=1;; (*TAIR) AT2G23320.1 (e_value=1e-69) | Symbols: WRKY15 | WRKY DNA-binding protein 15 | chr2:9924998-9926154 FORWARD LENGTH=317;; (*ITAG) Solyc02g093050.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:48575427-48577339 transcript_region:SL2.40ch02:48575427..48577339+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 26 (AHRD V1 ***- C9DI15_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00014750g0010.1 protein AED:0.29 eAED:0.29 QI:311|1|1|1|0.91|0.84|13|206|402; (*GB) gi|296085487|emb|CBI29219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=2e-23) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00014750g0013.1 protein AED:0.46 eAED:0.48 QI:0|0.25|0|0.8|0.25|0.2|5|0|207; (*GB) gi|218191419|gb|EEC73846.1| (e_value=1e-39) hypothetical protein OsI_08601 [Oryza sativa Indica Group];; (*TAIR) AT4G19420.2 (e_value=3e-38) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc08g074950.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56245792-56247690 transcript_region:SL2.40ch08:56245792..56247690- go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00014750g0012.1 protein AED:0.40 eAED:0.71 QI:0|0|0|1|0|0.5|4|0|77; (*ITAG) Solyc08g075030.2.1 (e_value=1e-17) genomic_reference:SL2.40ch08 gene_region:56353726-56357296 transcript_region:SL2.40ch08:56353726..56357296- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00026930g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|3|0|144; (*GB) gi|296936651|gb|ADH94324.1| (e_value=2e-31) photosystem II protein D1 [Syzygium cumini];; (*SWP) sp|A6MMA2|PSBA_CHLSC (e_value=5e-32) Photosystem Q(B) protein OS=Chloranthus spicatus GN=psbA PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=7e-33) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00025683g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|224092854|ref|XP_002334867.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G28630.1 (e_value=2e-55) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=335;; (*ITAG) Solyc11g045360.1.1 (e_value=1e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:37675222-37675821 transcript_region:SL2.40ch11:37675222..37675821+ go_terms:GO:0016021 functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 **-- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; GO:0016021 NbS00025683g0002.1 protein AED:0.03 eAED:0.03 QI:507|0.83|0.92|1|0.66|0.61|13|146|564; (*GB) gi|27802107|gb|AAO21303.1| (e_value=0.0) MADS box protein [Nicotiana tabacum];; (*TAIR) AT2G03060.2 (e_value=1e-31) | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903569 FORWARD LENGTH=386;; (*ITAG) Solyc11g045310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37367707-37374614 transcript_region:SL2.40ch11:37367707..37374614+ functional_description:"MADS box protein (AHRD V1 ***- Q84KS1_TOBAC)"; NbS00001521g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|295|460; (*GB) gi|359478489|ref|XP_002276395.2| (e_value=2e-103) PREDICTED: uncharacterized protein LOC100244907 [Vitis vinifera];; (*TAIR) AT5G58340.2 (e_value=3e-16) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:23582607-23584245 FORWARD LENGTH=448;; (*ITAG) Solyc06g082510.2.1 (e_value=1e-152) genomic_reference:SL2.40ch06 gene_region:44587244-44590094 transcript_region:SL2.40ch06:44587244..44590094+ go_terms:GO:0003677,GO:0045449 functional_description:"Telomeric repeat-binding factor 1 (Fragment) (AHRD V1 *--- TERF1_CRIGR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00009673g0013.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.33|1|0|0|6|366|320; (*GB) gi|297738233|emb|CBI27434.3| (e_value=8e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=7e-14) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=5e-15) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=9e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009673g0014.1 protein AED:0.73 eAED:0.86 QI:0|0|0|0.75|1|1|4|0|81 NbS00009673g0012.1 protein AED:0.12 eAED:0.22 QI:0|0|0|1|0|0|2|0|244; (*GB) gi|357437071|ref|XP_003588811.1| (e_value=1e-24) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-13) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-14) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g005400.1.1 (e_value=9e-90) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:314348-315762 transcript_region:SL2.40ch05:314348..315762- functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009673g0015.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|100; (*ITAG) Solyc05g005400.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:314348-315762 transcript_region:SL2.40ch05:314348..315762- functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00038779g0002.1 protein AED:0.02 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|859; (*GB) gi|225443946|ref|XP_002272135.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Vitis vinifera];; (*SWP) sp|Q9LFF1|PP281_ARATH (e_value=1e-82) Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1;; (*TAIR) AT1G30290.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:10670320-10672740 REVERSE LENGTH=806;; (*ITAG) Solyc08g023490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16844276-16847129 transcript_region:SL2.40ch08:16844276..16847129- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011123g0009.1 protein AED:0.21 eAED:0.21 QI:174|1|0.75|1|0.66|0.5|4|225|106; (*GB) gi|225461319|ref|XP_002284509.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100255528 [Vitis vinifera];; (*ITAG) Solyc07g063580.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:63244233-63247487 transcript_region:SL2.40ch07:63244233..63247487- functional_description:"Unknown Protein (AHRD V1)"; NbS00011123g0013.1 protein AED:0.29 eAED:0.38 QI:29|0.71|0.62|1|0.57|0.62|8|0|250; (*GB) gi|255580440|ref|XP_002531046.1| (e_value=8e-71) Thiol:disulfide interchange protein dsbD precursor, putative [Ricinus communis];; (*SWP) sp|Q9M5P3|CCDA_ARATH (e_value=4e-67) Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana GN=CCDA PE=1 SV=1;; (*TAIR) AT5G54290.1 (e_value=3e-68) | Symbols: CcdA | cytochrome c biogenesis protein family | chr5:22051097-22053923 FORWARD LENGTH=354;; (*ITAG) Solyc07g063570.2.1 (e_value=3e-106) genomic_reference:SL2.40ch07 gene_region:63234672-63241231 transcript_region:SL2.40ch07:63234672..63241231- go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7MU78_ARALY); contains Interpro domain(s) IPR003834 Cytochrome c assembly protein, transmembrane region "; GO:0016020 NbS00011123g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0.5|0.66|3|117|350; (*GB) gi|68131790|gb|AAY85179.1| (e_value=5e-84) fiber expressed protein [Gossypium hirsutum];; (*TAIR) AT1G61260.1 (e_value=2e-53) | Symbols: | Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344;; (*ITAG) Solyc07g063560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63231728-63233789 transcript_region:SL2.40ch07:63231728..63233789+ functional_description:"Cotton fiber expressed protein 1 (AHRD V1 ***- O81373_GOSHI); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00030717g0009.1 protein AED:0.25 eAED:0.25 QI:223|0.66|0.5|1|0.66|0.5|4|0|169; (*ITAG) Solyc09g064920.2.1 (e_value=7e-67) genomic_reference:SL2.40ch09 gene_region:58041266-58046595 transcript_region:SL2.40ch09:58041266..58046595- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00021861g0006.1 protein AED:0.05 eAED:0.05 QI:212|1|0.5|1|1|0.5|2|0|138; (*GB) gi|147773160|emb|CAN75916.1| (e_value=2e-95) hypothetical protein VITISV_022159 [Vitis vinifera];; (*SWP) sp|Q90941|PB1_CHICK (e_value=2e-11) Protein polybromo-1 OS=Gallus gallus GN=PBRM1 PE=1 SV=1;; (*TAIR) AT4G22140.1 (e_value=3e-86) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728556-11730230 REVERSE LENGTH=234;; (*ITAG) Solyc07g049210.2.1 (e_value=1e-95) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00005140g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|255546015|ref|XP_002514067.1| (e_value=3e-14) monooxygenase, putative [Ricinus communis]; NbS00005140g0005.1 protein AED:0.10 eAED:0.10 QI:279|1|1|1|1|1|5|1083|223; (*GB) gi|255546017|ref|XP_002514068.1| (e_value=6e-121) Charged multivesicular body protein 2a, putative [Ricinus communis];; (*SWP) sp|Q9SKI2|VPS2A_ARATH (e_value=1e-114) Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2;; (*TAIR) AT2G06530.1 (e_value=8e-116) | Symbols: VPS2.1 | SNF7 family protein | chr2:2588740-2590285 REVERSE LENGTH=225;; (*ITAG) Solyc12g009060.1.1 (e_value=4e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2350521-2354721 transcript_region:SL2.40ch12:2350521..2354721+ go_terms:GO:0019904 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6T4F7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0019904 NbS00027586g0002.1 protein AED:0.30 eAED:0.32 QI:0|0.58|0.69|0.92|1|1|13|812|603; (*GB) gi|225452009|ref|XP_002280059.1| (e_value=0.0) PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6NPS8|ATR3_ARATH (e_value=0.0) NADPH-dependent diflavin oxidoreductase ATR3 OS=Arabidopsis thaliana GN=ATR3 PE=1 SV=1;; (*TAIR) AT3G02280.1 (e_value=0.0) | Symbols: | Flavodoxin family protein | chr3:453646-457659 FORWARD LENGTH=623;; (*ITAG) Solyc02g085820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43192521-43201792 transcript_region:SL2.40ch02:43192521..43201792+ go_terms:GO:0050661,GO:0050660 functional_description:"NADPH-cytochrome P450 reductase (AHRD V1 **** A9PL55_ANOFN); contains Interpro domain(s) IPR003097 FAD-binding, type 1 "; GO:0050661,GO:0050660 NbS00027586g0003.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|135; (*GB) gi|225452011|ref|XP_002283616.1| (e_value=7e-44) PREDICTED: 30S ribosomal protein 3, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|P82412|RRP3_SPIOL (e_value=1e-42) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1;; (*TAIR) AT1G68590.1 (e_value=2e-41) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=166;; (*ITAG) Solyc03g034190.2.1 (e_value=5e-53) genomic_reference:SL2.40ch03 gene_region:10158743-10161172 transcript_region:SL2.40ch03:10158743..10161172+ go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00042682g0001.1 protein AED:0.18 eAED:0.18 QI:530|0.75|0.77|0.88|0.87|0.77|9|1192|279; (*GB) gi|225437465|ref|XP_002273574.1| (e_value=6e-107) PREDICTED: mitochondrial nicotinamide adenine dinucleotide transporter 1 isoform 1 [Vitis vinifera];; (*SWP) sp|P40556|YIA6_YEAST (e_value=3e-36) Mitochondrial nicotinamide adenine dinucleotide transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIA6 PE=1 SV=1;; (*TAIR) AT2G47490.1 (e_value=5e-100) | Symbols: ATNDT1, NDT1 | NAD+ transporter 1 | chr2:19487549-19489311 FORWARD LENGTH=312;; (*ITAG) Solyc09g075490.2.1 (e_value=6e-116) genomic_reference:SL2.40ch09 gene_region:62687636-62694652 transcript_region:SL2.40ch09:62687636..62694652- go_terms:GO:0051724 functional_description:"Mitochondrial carrier like protein (AHRD V1 ***- Q4A3J5_ARATH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0051724 NbS00036747g0010.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|0.66|3|0|356; (*GB) gi|356513613|ref|XP_003525506.1| (e_value=1e-86) PREDICTED: uncharacterized protein LOC100816653 [Glycine max];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=5e-74) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT4G18770.1 (e_value=4e-75) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427;; (*ITAG) Solyc03g112890.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57226344-57228454 transcript_region:SL2.40ch03:57226344..57228454- go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00036747g0009.1 protein AED:0.18 eAED:0.20 QI:1108|0.75|0.76|1|0.58|0.69|13|0|708; (*GB) gi|147886439|gb|ABQ52428.1| (e_value=0.0) boron transporter [Citrus macrophylla];; (*SWP) sp|Q9M1P7|BOR2_ARATH (e_value=0.0) Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1;; (*TAIR) AT3G62270.1 (e_value=0.0) | Symbols: | HCO3- transporter family | chr3:23042528-23045633 REVERSE LENGTH=703;; (*ITAG) Solyc06g071500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40411871-40416435 transcript_region:SL2.40ch06:40411871..40416435+ go_terms:GO:0080139 functional_description:"Boron transporter (AHRD V1 **-* A5JUZ5_9ROSI); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0080139 NbS00004238g0018.1 protein AED:0.16 eAED:0.16 QI:156|0.87|0.88|1|0.87|0.77|9|398|304; (*GB) gi|77416949|gb|ABA81870.1| (e_value=2e-140) unknown [Solanum tuberosum];; (*SWP) sp|P43333|RU2A_ARATH (e_value=3e-102) U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2;; (*TAIR) AT1G09760.1 (e_value=2e-103) | Symbols: U2A' | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249;; (*ITAG) Solyc03g117940.2.1 (e_value=3e-142) genomic_reference:SL2.40ch03 gene_region:60972959-60976823 transcript_region:SL2.40ch03:60972959..60976823+ go_terms:GO:0005515,GO:0003729 functional_description:"U2 small nuclear ribonucleoprotein A&apos (AHRD V1 ***- Q1HPT8_BOMMO)"; GO:0005515,GO:0003729 NbS00004238g0017.1 protein AED:0.20 eAED:0.27 QI:130|0.5|0.57|1|0.33|0.28|7|84|1316; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=6e-108) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=8e-77) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=2e-43) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc06g074450.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42463612-42465330 transcript_region:SL2.40ch06:42463612..42465330+ functional_description:"FRIGIDA (AHRD V1 *-*- Q52S92_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00004238g0019.1 protein AED:0.25 eAED:0.26 QI:0|0.90|0.75|1|1|1|12|106|1002; (*GB) gi|359493969|ref|XP_002283802.2| (e_value=0.0) PREDICTED: chaperone protein ClpD, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P42762|CLPD_ARATH (e_value=0.0) Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1;; (*TAIR) AT5G51070.1 (e_value=0.0) | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:20764479-20768481 FORWARD LENGTH=945;; (*ITAG) Solyc03g117950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60977137-60983778 transcript_region:SL2.40ch03:60977137..60983778- go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0016021 functional_description:"Chaperone protein ClpB 1 (AHRD V1 **-- D0CK17_9SYNE); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0016021 NbS00004238g0024.1 protein AED:0.69 eAED:0.69 QI:0|1|0.5|1|0|0|2|18|72 NbS00022110g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|123; (*GB) gi|10241933|dbj|BAB13710.1| (e_value=4e-25) elicitor resposible protein [Nicotiana tabacum];; (*ITAG) Solyc05g013630.1.1 (e_value=1e-11) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6934325-6934771 transcript_region:SL2.40ch05:6934325..6934771+ functional_description:"Unknown protein (Fragment) (AHRD V1 ***- Q43520_SOLLC)"; NbS00033168g0008.1 protein AED:0.33 eAED:0.37 QI:0|0.62|0.55|0.77|0.75|0.66|9|0|240; (*GB) gi|148907059|gb|ABR16673.1| (e_value=4e-131) unknown [Picea sitchensis];; (*SWP) sp|Q9LJI5|VA0D1_ARATH (e_value=6e-130) V-type proton ATPase subunit d1 OS=Arabidopsis thaliana GN=VHA-D1 PE=2 SV=1;; (*TAIR) AT3G28710.1 (e_value=5e-131) | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10773144-10775594 REVERSE LENGTH=351;; (*ITAG) Solyc10g081530.1.1 (e_value=5e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61897645-61902538 transcript_region:SL2.40ch10:61897645..61902538- go_terms:GO:0033179,GO:0033177 functional_description:"V-type proton ATPase subunit d 1 (AHRD V1 ***- D3PHZ2_9MAXI); contains Interpro domain(s) IPR016727 ATPase, V0 complex, subunit D "; GO:0033179,GO:0033177 NbS00033168g0009.1 protein AED:0.09 eAED:0.09 QI:131|0.92|0.78|1|0.92|0.92|14|218|894; (*GB) gi|147854522|emb|CAN82786.1| (e_value=1e-112) hypothetical protein VITISV_037812 [Vitis vinifera];; (*SWP) sp|P50582|HSK1_SCHPO (e_value=1e-20) Cell cycle serine/threonine-protein kinase hsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsk1 PE=1 SV=1;; (*TAIR) AT4G16970.1 (e_value=1e-78) | Symbols: | Protein kinase superfamily protein | chr4:9551516-9555766 REVERSE LENGTH=889;; (*ITAG) Solyc08g077990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59037374-59044064 transcript_region:SL2.40ch08:59037374..59044064- go_terms:GO:0006468 functional_description:"Kinase like protein (AHRD V1 *-*- Q0WPK0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002175g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.6|0.33|1|0.6|0.66|6|0|270; (*GB) gi|75164734|sp|Q948T9.1|RBOHB_SOLTU (e_value=2e-136) RecName: Full=Respiratory burst oxidase homolog protein B; AltName: Full=NADPH oxidase RBOHB; AltName: Full=StRBOHB;; (*SWP) sp|Q948T9|RBOHB_SOLTU (e_value=7e-138) Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1;; (*TAIR) AT1G09090.1 (e_value=8e-74) | Symbols: ATRBOHB, ATRBOHB-BETA, RBOHB | respiratory burst oxidase homolog B | chr1:2932743-2935590 FORWARD LENGTH=622;; (*ITAG) Solyc01g099620.2.1 (e_value=3e-136) genomic_reference:SL2.40ch01 gene_region:81563045-81567144 transcript_region:SL2.40ch01:81563045..81567144- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00002175g0004.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0|1|1|1|5|0|258; (*GB) gi|75164734|sp|Q948T9.1|RBOHB_SOLTU (e_value=2e-102) RecName: Full=Respiratory burst oxidase homolog protein B; AltName: Full=NADPH oxidase RBOHB; AltName: Full=StRBOHB;; (*SWP) sp|Q948T9|RBOHB_SOLTU (e_value=6e-104) Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1;; (*TAIR) AT1G09090.1 (e_value=4e-84) | Symbols: ATRBOHB, ATRBOHB-BETA, RBOHB | respiratory burst oxidase homolog B | chr1:2932743-2935590 FORWARD LENGTH=622;; (*ITAG) Solyc01g099620.2.1 (e_value=3e-105) genomic_reference:SL2.40ch01 gene_region:81563045-81567144 transcript_region:SL2.40ch01:81563045..81567144- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00014074g0006.1 protein AED:0.40 eAED:0.49 QI:35|0.4|0.33|1|0.6|0.66|6|0|215; (*GB) gi|110931654|gb|ABH02826.1| (e_value=2e-54) MYB transcription factor MYB55 [Glycine max];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=1e-50) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=1e-51) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc11g044320.1.1 (e_value=8e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35412464-35418671 transcript_region:SL2.40ch11:35412464..35418671- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone (AHRD V1 ***- B9HN09_POPTR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0005634,GO:0003677,GO:0045449 NbS00012411g0004.1 protein AED:0.53 eAED:0.88 QI:0|0|0|0.4|1|0.8|5|0|213; (*GB) gi|225463149|ref|XP_002266845.1| (e_value=4e-53) PREDICTED: enhancer of polycomb homolog 2 [Vitis vinifera];; (*TAIR) AT1G16690.1 (e_value=1e-42) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr1:5706458-5709371 FORWARD LENGTH=439;; (*ITAG) Solyc02g081650.2.1 (e_value=7e-85) genomic_reference:SL2.40ch02 gene_region:40098912-40106547 transcript_region:SL2.40ch02:40098912..40106547+ go_terms:GO:0003700 functional_description:"Enhancer of polycomb-like protein (AHRD V1 ***- B9N5C9_POPTR); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003700 NbS00018590g0004.1 protein AED:0.26 eAED:0.27 QI:0|0.86|0.83|1|0.91|0.95|24|0|1053; (*GB) gi|297744752|emb|CBI38014.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=7e-108) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT4G39050.1 (e_value=0.0) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc01g110190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88709560-88721589 transcript_region:SL2.40ch01:88709560..88721589- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00028121g0018.1 protein AED:0.01 eAED:0.01 QI:39|1|1|1|0.85|0.87|8|304|545; (*GB) gi|359481991|ref|XP_002277150.2| (e_value=7e-118) PREDICTED: uncharacterized protein LOC100242486 [Vitis vinifera];; (*SWP) sp|Q16514|TAF12_HUMAN (e_value=1e-35) Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1;; (*TAIR) AT3G10070.1 (e_value=2e-75) | Symbols: TAF12, TAFII58 | TBP-associated factor 12 | chr3:3104195-3106798 REVERSE LENGTH=539;; (*ITAG) Solyc09g009680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3073330-3079860 transcript_region:SL2.40ch09:3073330..3079860+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- C1BLQ3_OSMMO); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00028121g0001.1 protein AED:0.06 eAED:0.06 QI:16|1|0.5|1|1|1|2|0|161; (*GB) gi|225440924|ref|XP_002276940.1| (e_value=8e-57) PREDICTED: purple acid phosphatase 22 [Vitis vinifera];; (*SWP) sp|Q8S340|PPA22_ARATH (e_value=1e-57) Purple acid phosphatase 22 OS=Arabidopsis thaliana GN=PAP22 PE=2 SV=1;; (*TAIR) AT3G52820.1 (e_value=1e-58) | Symbols: ATPAP22, PAP22 | purple acid phosphatase 22 | chr3:19574236-19576938 REVERSE LENGTH=434;; (*ITAG) Solyc09g009600.1.1 (e_value=5e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3016831-3020600 transcript_region:SL2.40ch09:3016831..3020600- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00028121g0021.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|308; (*GB) gi|356570845|ref|XP_003553594.1| (e_value=6e-170) PREDICTED: purple acid phosphatase 22-like [Glycine max];; (*SWP) sp|Q8S340|PPA22_ARATH (e_value=8e-158) Purple acid phosphatase 22 OS=Arabidopsis thaliana GN=PAP22 PE=2 SV=1;; (*TAIR) AT3G52820.1 (e_value=6e-159) | Symbols: ATPAP22, PAP22 | purple acid phosphatase 22 | chr3:19574236-19576938 REVERSE LENGTH=434;; (*ITAG) Solyc09g009600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3016831-3020600 transcript_region:SL2.40ch09:3016831..3020600- go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00028121g0023.1 protein AED:0.08 eAED:0.08 QI:383|0.87|0.88|1|0.87|0.88|9|588|304; (*GB) gi|359482324|ref|XP_002283153.2| (e_value=3e-163) PREDICTED: uridine nucleosidase 1-like [Vitis vinifera];; (*SWP) sp|Q9SJM7|URH1_ARATH (e_value=1e-158) Uridine nucleosidase 1 OS=Arabidopsis thaliana GN=URH1 PE=1 SV=2;; (*TAIR) AT2G36310.1 (e_value=9e-160) | Symbols: URH1 | uridine-ribohydrolase 1 | chr2:15224692-15226633 REVERSE LENGTH=336;; (*ITAG) Solyc09g009690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3081754-3086462 transcript_region:SL2.40ch09:3081754..3086462+ functional_description:"Ribonucleoside hydrolase 1 (AHRD V1 ***- D1RWC6_SEROD); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; NbS00028121g0005.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|356548405|ref|XP_003542592.1| (e_value=4e-42) PREDICTED: uncharacterized protein LOC100786697 [Glycine max];; (*TAIR) AT3G52790.1 (e_value=6e-38) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr3:19566004-19566333 REVERSE LENGTH=109;; (*ITAG) Solyc10g083410.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62558105-62558422 transcript_region:SL2.40ch10:62558105..62558422- go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7LUB2_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00042293g0004.1 protein AED:0.25 eAED:0.25 QI:203|0.33|0.14|0.42|0.83|0.85|7|0|207; (*GB) gi|225443241|ref|XP_002271570.1| (e_value=3e-111) PREDICTED: vacuolar protein sorting-associated protein 53 homolog [Vitis vinifera];; (*SWP) sp|Q8CCB4|VPS53_MOUSE (e_value=2e-45) Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus GN=Vps53 PE=2 SV=1;; (*TAIR) AT1G50500.1 (e_value=1e-104) | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking VPS53 family protein | chr1:18708217-18715597 REVERSE LENGTH=828;; (*ITAG) Solyc04g049490.2.1 (e_value=7e-125) genomic_reference:SL2.40ch04 gene_region:41235273-41255192 transcript_region:SL2.40ch04:41235273..41255192+ go_terms:GO:0005215 functional_description:"Vacuolar protein sorting-associated protein 53 (AHRD V1 **-- D0NTZ4_PHYIN); contains Interpro domain(s) IPR007234 Vps53-like, N-terminal "; GO:0005215 NbS00060831g0007.1 protein AED:0.28 eAED:0.29 QI:0|0.57|0.37|1|0.42|0.25|8|256|476; (*GB) gi|255584934|ref|XP_002533181.1| (e_value=1e-117) protein translocase secy subunit, putative [Ricinus communis];; (*SWP) sp|P93690|SECY_SPIOL (e_value=2e-115) Preprotein translocase subunit SECY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1;; (*TAIR) AT2G18710.1 (e_value=1e-113) | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551;; (*ITAG) Solyc07g006520.2.1 (e_value=6e-132) genomic_reference:SL2.40ch07 gene_region:1318128-1325502 transcript_region:SL2.40ch07:1318128..1325502- go_terms:GO:0008565,GO:0005515 functional_description:"Preprotein translocase secY subunit (AHRD V1 ***- A8IS14_CHLRE); contains Interpro domain(s) IPR002208 SecY protein "; GO:0008565,GO:0005515 NbS00060831g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.33|1|0.6|0.83|6|0|599; (*GB) gi|359484957|ref|XP_002264416.2| (e_value=0.0) PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Vitis vinifera];; (*SWP) sp|Q8L7Z0|CNG17_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1;; (*TAIR) AT4G30360.1 (e_value=0.0) | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720;; (*ITAG) Solyc07g006510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1308919-1317697 transcript_region:SL2.40ch07:1308919..1317697+ go_terms:GO:0005216,GO:0030551 functional_description:"Cyclic nucleotide-gated ion channel 18 (AHRD V1 **** D7M6N7_ARALY); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005216,GO:0030551 NbS00027648g0007.1 protein AED:0.05 eAED:0.05 QI:132|0|1|1|0|0|2|46|167; (*GB) gi|305861129|gb|ADM72804.1| (e_value=3e-56) early light-inducible protein [Capsicum annuum];; (*SWP) sp|P11432|ELI_PEA (e_value=1e-39) Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G22840.1 (e_value=2e-41) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195;; (*ITAG) Solyc09g082700.2.1 (e_value=3e-63) genomic_reference:SL2.40ch09 gene_region:63810388-63811862 transcript_region:SL2.40ch09:63810388..63811862- go_terms:GO:0016168 functional_description:"Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)"; GO:0016168 NbS00027648g0008.1 protein AED:0.25 eAED:0.25 QI:235|0.88|0.88|1|0.94|0.88|18|388|710; (*GB) gi|359477563|ref|XP_002283373.2| (e_value=0.0) PREDICTED: dymeclin-like [Vitis vinifera];; (*SWP) sp|Q5ZLW3|DYM_CHICK (e_value=5e-58) Dymeclin OS=Gallus gallus GN=DYM PE=2 SV=1;; (*TAIR) AT1G04200.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732;; (*ITAG) Solyc09g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63797368-63807682 transcript_region:SL2.40ch09:63797368..63807682+ go_terms:GO:0005515 functional_description:"Dymeclin (AHRD V1 ***- DYM_CHICK); contains Interpro domain(s) IPR019142 Dymeclin "; GO:0005515 NbS00006932g0003.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|1|1|3|0|223; (*GB) gi|225430190|ref|XP_002282419.1| (e_value=5e-102) PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LFM6|PP375_ARATH (e_value=5e-82) Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1;; (*TAIR) AT5G11310.1 (e_value=4e-83) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:3606490-3608409 FORWARD LENGTH=602;; (*ITAG) Solyc06g065510.2.1 (e_value=3e-129) genomic_reference:SL2.40ch06 gene_region:37283835-37286950 transcript_region:SL2.40ch06:37283835..37286950+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3P4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006932g0015.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.4|0.75|0.6|5|0|250; (*GB) gi|225430190|ref|XP_002282419.1| (e_value=2e-57) PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LFM6|PP375_ARATH (e_value=2e-38) Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1;; (*TAIR) AT3G11830.2 (e_value=2e-50) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:3732734-3736156 FORWARD LENGTH=555;; (*ITAG) Solyc06g065510.2.1 (e_value=8e-85) genomic_reference:SL2.40ch06 gene_region:37283835-37286950 transcript_region:SL2.40ch06:37283835..37286950+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3P4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006932g0117.1 protein AED:0.08 eAED:0.08 QI:567|1|0.83|1|1|1|6|631|429 NbS00006932g0116.1 protein AED:0.19 eAED:0.19 QI:294|0.88|0.72|1|0.88|0.77|18|0|867 NbS00017349g0024.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|0|0.33|3|0|198; (*GB) gi|147828043|emb|CAN68511.1| (e_value=9e-43) hypothetical protein VITISV_043839 [Vitis vinifera];; (*TAIR) AT2G41940.1 (e_value=2e-28) | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507556-17508329 FORWARD LENGTH=257;; (*ITAG) Solyc10g078990.1.1 (e_value=9e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59960204-59961127 transcript_region:SL2.40ch10:59960204..59961127- go_terms:GO:0005622 functional_description:"Zinc finger-like protein (AHRD V1 ***- Q9M2P1_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00017349g0027.1 protein AED:0.02 eAED:0.02 QI:38|0.66|0.71|1|0.16|0.28|7|404|157; (*GB) gi|225441519|ref|XP_002280648.1| (e_value=7e-75) PREDICTED: uncharacterized protein LOC100252017 [Vitis vinifera];; (*TAIR) AT2G41945.1 (e_value=1e-71) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17511071-17512898 REVERSE LENGTH=158;; (*ITAG) Solyc01g099730.2.1 (e_value=6e-86) genomic_reference:SL2.40ch01 gene_region:81647826-81653317 transcript_region:SL2.40ch01:81647826..81653317+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017349g0026.1 protein AED:0.28 eAED:0.49 QI:0|0|0|1|0|0.25|4|0|209; (*ITAG) Solyc05g010360.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024173g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.25|0.75|1|1|4|312|131; (*GB) gi|147822283|emb|CAN72908.1| (e_value=1e-21) hypothetical protein VITISV_018845 [Vitis vinifera];; (*ITAG) Solyc07g007270.2.1 (e_value=3e-37) genomic_reference:SL2.40ch07 gene_region:1995885-1997264 transcript_region:SL2.40ch07:1995885..1997264- functional_description:"Unknown Protein (AHRD V1)"; NbS00003582g0013.1 protein AED:0.16 eAED:0.16 QI:0|1|0.85|1|1|1|7|0|211; (*GB) gi|77416915|gb|ABA81853.1| (e_value=2e-131) NADH:ubiquinone oxidoreductase-like [Solanum tuberosum];; (*SWP) sp|P80269|NDUS8_SOLTU (e_value=3e-129) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G79010.1 (e_value=3e-119) | Symbols: | Alpha-helical ferredoxin | chr1:29725138-29726933 REVERSE LENGTH=222;; (*ITAG) Solyc01g109620.2.1 (e_value=5e-134) genomic_reference:SL2.40ch01 gene_region:88275740-88282020 transcript_region:SL2.40ch01:88275740..88282020- go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase subunit I (AHRD V1 **** D5BPB0_PUNMI); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0008137 NbS00003582g0012.1 protein AED:0.13 eAED:0.17 QI:347|0.57|0.5|1|1|1|8|204|569; (*GB) gi|359475176|ref|XP_003631610.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100852464 [Vitis vinifera];; (*TAIR) AT2G21710.1 (e_value=0.0) | Symbols: EMB2219 | Mitochondrial transcription termination factor family protein | chr2:9270886-9273307 FORWARD LENGTH=641;; (*ITAG) Solyc01g109630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88282474-88285949 transcript_region:SL2.40ch01:88282474..88285949- functional_description:"mTERF domain-containing protein 3, mitochondrial (AHRD V1 *--- MTER3_HUMAN); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00003582g0011.1 protein AED:0.35 eAED:0.35 QI:0|1|0.6|1|1|1|5|0|598; (*GB) gi|359475328|ref|XP_003631657.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera];; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc01g109650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00003582g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|359475328|ref|XP_003631657.1| (e_value=2e-73) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera];; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=1e-55) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT4G39270.1 (e_value=5e-57) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:18276874-18279710 FORWARD LENGTH=864;; (*ITAG) Solyc01g109650.2.1 (e_value=1e-105) genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00003582g0014.1 protein AED:0.40 eAED:0.44 QI:0|0.57|0.62|0.87|0.28|0.37|8|477|202; (*GB) gi|22331732|ref|NP_190655.2| (e_value=1e-57) AP-3 complex subunit sigma [Arabidopsis thaliana];; (*SWP) sp|Q8VZ37|AP3S_ARATH (e_value=4e-59) AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1;; (*TAIR) AT3G50860.1 (e_value=3e-60) | Symbols: | Clathrin adaptor complex small chain family protein | chr3:18902346-18903959 FORWARD LENGTH=166;; (*ITAG) Solyc01g109640.2.1 (e_value=1e-86) genomic_reference:SL2.40ch01 gene_region:88288063-88291525 transcript_region:SL2.40ch01:88288063..88291525+ go_terms:GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-3 complex subunit sigma-2 (AHRD V1 ***- B4FA26_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030117,GO:0015031,GO:0006810 NbS00042291g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|508; (*GB) gi|3108161|gb|AAC61852.1| (e_value=0.0) putative monosaccharide transporter 1 [Petunia x hybrida];; (*SWP) sp|Q9LT15|STP10_ARATH (e_value=0.0) Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1;; (*TAIR) AT3G19940.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:6938211-6939975 FORWARD LENGTH=514;; (*ITAG) Solyc01g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2369175-2373387 transcript_region:SL2.40ch01:2369175..2373387- go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00017926g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|7|353|325; (*GB) gi|225436884|ref|XP_002271258.1| (e_value=2e-167) PREDICTED: exosome complex component rrp4-like [Vitis vinifera];; (*SWP) sp|Q09704|RRP4_SCHPO (e_value=8e-58) Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp4 PE=2 SV=1;; (*TAIR) AT1G03360.1 (e_value=7e-150) | Symbols: ATRRP4, RRP4 | ribosomal RNA processing 4 | chr1:824653-826179 FORWARD LENGTH=322;; (*ITAG) Solyc09g074090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61266190-61271097 transcript_region:SL2.40ch09:61266190..61271097+ go_terms:GO:0000175 functional_description:"Exosome complex exonuclease RRP4 (AHRD V1 ***- D0NCN9_PHYIN)"; GO:0000175 NbS00017926g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|147792209|emb|CAN72978.1| (e_value=2e-59) hypothetical protein VITISV_009029 [Vitis vinifera];; (*SWP) sp|P26861|RM06_MARPO (e_value=1e-47) 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2;; (*TAIR) AT2G18400.1 (e_value=7e-57) | Symbols: | ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102;; (*ITAG) Solyc02g085280.1.1 (e_value=2e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42805687-42805995 transcript_region:SL2.40ch02:42805687..42805995- go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- A6NXE5_9BACE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00011141g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|179 NbS00008020g0004.1 protein AED:0.20 eAED:0.20 QI:174|1|1|1|0.5|0.4|5|315|237; (*GB) gi|255582605|ref|XP_002532084.1| (e_value=9e-86) Nitrogen fixation protein nifU, putative [Ricinus communis];; (*SWP) sp|Q84RQ7|NIFU3_ARATH (e_value=2e-69) NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1;; (*TAIR) AT4G25910.1 (e_value=1e-70) | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 | chr4:13164128-13165094 FORWARD LENGTH=236;; (*ITAG) Solyc05g044630.2.1 (e_value=1e-104) genomic_reference:SL2.40ch05 gene_region:56380935-56383356 transcript_region:SL2.40ch05:56380935..56383356+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_ACIAD); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00022265g0001.1 protein AED:0.27 eAED:0.27 QI:72|1|0.5|1|0|0|2|0|239; (*GB) gi|225461411|ref|XP_002282248.1| (e_value=7e-74) PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera];; (*SWP) sp|Q8GUK7|RMA3_ARATH (e_value=6e-51) E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=4e-52) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc07g063200.1.1 (e_value=6e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62961364-62962080 transcript_region:SL2.40ch07:62961364..62962080+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TF06_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00020445g0006.1 protein AED:0.22 eAED:0.22 QI:1102|1|1|1|0.5|0.66|9|232|155; (*GB) gi|224097766|ref|XP_002311071.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41005|CBPX_PEA (e_value=9e-83) Serine carboxypeptidase-like (Fragment) OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G45010.1 (e_value=3e-76) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc11g008280.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2500465-2506098 transcript_region:SL2.40ch11:2500465..2506098+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase (AHRD V1 ***- Q9XH61_9ASTR); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00020445g0106.1 protein AED:0.01 eAED:0.01 QI:83|1|0.66|1|0.5|0.33|3|0|57 NbS00020445g0109.1 protein AED:0.20 eAED:0.20 QI:206|0.33|0.25|1|0|0.5|4|0|163 NbS00020445g0110.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.66|1|0.66|3|0|94 NbS00020445g0205.1 protein AED:0.69 eAED:0.84 QI:0|0|0.2|0.6|1|1|5|0|71 NbS00020445g0208.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|0|430 NbS00021541g0003.1 protein AED:0.32 eAED:0.41 QI:358|0.66|0.8|1|0.11|0.1|10|537|217; (*GB) gi|328550425|gb|AEB22065.1| (e_value=2e-52) lesion stimulating disease 1 protein, partial [Solanum tuberosum];; (*SWP) sp|P94077|LSD1_ARATH (e_value=2e-38) Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1;; (*TAIR) AT4G20380.7 (e_value=2e-39) | Symbols: LSD1 | LSD1 zinc finger family protein | chr4:11005012-11006438 FORWARD LENGTH=189;; (*ITAG) Solyc02g069720.2.1 (e_value=1e-64) genomic_reference:SL2.40ch02 gene_region:34117564-34122011 transcript_region:SL2.40ch02:34117564..34122011+ go_terms:GO:0003700 functional_description:"Zinc finger protein LSD1 (AHRD V1 **-- Q8W195_BRAOL); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; GO:0003700 NbS00051823g0015.1 protein AED:0.02 eAED:0.02 QI:427|1|0.83|1|0.6|0.33|6|1619|199; (*GB) gi|356519282|ref|XP_003528302.1| (e_value=5e-108) PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Glycine max];; (*SWP) sp|P21616|AVP_VIGRR (e_value=3e-106) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=5e-106) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc06g068240.2.1 (e_value=2e-112) genomic_reference:SL2.40ch06 gene_region:38687848-38692383 transcript_region:SL2.40ch06:38687848..38692383+ go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00051823g0014.1 protein AED:0.22 eAED:0.22 QI:314|0.77|0.86|1|0.72|0.69|23|393|1465; (*GB) gi|359482723|ref|XP_003632816.1| (e_value=0.0) PREDICTED: protein KIAA0664 homolog [Vitis vinifera];; (*SWP) sp|B4MY63|K0664_DROWI (e_value=5e-31) Protein KIAA0664 homolog OS=Drosophila willistoni GN=GK22132 PE=3 SV=1;; (*TAIR) AT1G15290.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5257327-5264814 REVERSE LENGTH=1608;; (*ITAG) Solyc06g068230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38675059-38684575 transcript_region:SL2.40ch06:38675059..38684575+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_NEUCR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00051823g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.66|3|0|655; (*GB) gi|224129414|ref|XP_002328711.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LU46|RH35_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1;; (*TAIR) AT5G51280.1 (e_value=0.0) | Symbols: | DEAD-box protein abstrakt, putative | chr5:20841456-20843645 FORWARD LENGTH=591;; (*ITAG) Solyc06g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38698621-38702294 transcript_region:SL2.40ch06:38698621..38702294- go_terms:GO:0008026,GO:0005524,GO:0008270 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524,GO:0008270 NbS00001039g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|69 NbS00001039g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.42|0.25|1|0.85|0.87|8|355|371; (*GB) gi|30681728|ref|NP_850025.1| (e_value=4e-85) 6-phosphofructokinase 5 [Arabidopsis thaliana];; (*SWP) sp|Q8VYN6|K6PF5_ARATH (e_value=1e-86) 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1;; (*TAIR) AT2G22480.1 (e_value=1e-87) | Symbols: PFK5 | phosphofructokinase 5 | chr2:9545670-9548414 FORWARD LENGTH=537;; (*ITAG) Solyc04g014270.2.1 (e_value=1e-99) genomic_reference:SL2.40ch04 gene_region:4578308-4586276 transcript_region:SL2.40ch04:4578308..4586276+ go_terms:GO:0003872 functional_description:"Phosphofructokinase family protein (AHRD V1 **** D7LE10_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0003872 NbS00001039g0009.1 protein AED:0.23 eAED:0.23 QI:83|1|1|1|0.4|0.66|6|202|348; (*GB) gi|297735770|emb|CBI18457.3| (e_value=3e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CIB9|ESCO2_MOUSE (e_value=9e-31) N-acetyltransferase ESCO2 OS=Mus musculus GN=Esco2 PE=2 SV=3;; (*TAIR) AT4G31400.1 (e_value=6e-104) | Symbols: CTF7 | damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345;; (*ITAG) Solyc01g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1728460-1733199 transcript_region:SL2.40ch01:1728460..1733199+ go_terms:GO:0006281 functional_description:"N-acetyltransferase ESCO1 (AHRD V1 **-- B6TTW6_MAIZE); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0006281 NbS00027060g0004.1 protein AED:0.16 eAED:0.33 QI:0|0|0|1|1|1|2|0|82; (*GB) gi|356553761|ref|XP_003545221.1| (e_value=1e-29) PREDICTED: putative methyltransferase NSUN6-like [Glycine max];; (*TAIR) AT1G06560.1 (e_value=4e-25) | Symbols: | NOL1/NOP2/sun family protein | chr1:2007660-2011824 FORWARD LENGTH=599;; (*ITAG) Solyc07g045070.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00027060g0003.1 protein AED:0.30 eAED:0.52 QI:49|0.5|0.33|1|0|0.33|3|0|87; (*ITAG) Solyc07g045070.2.1 (e_value=6e-28) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00024340g0007.1 protein AED:0.11 eAED:0.13 QI:187|0.72|0.75|1|0.72|0.75|12|266|409; (*GB) gi|350537233|ref|NP_001234285.1| (e_value=0.0) lysine--tRNA ligase [Solanum lycopersicum];; (*SWP) sp|Q43776|SYK_SOLLC (e_value=0.0) Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1;; (*TAIR) AT3G11710.1 (e_value=2e-169) | Symbols: ATKRS-1 | lysyl-tRNA synthetase 1 | chr3:3702359-3705613 REVERSE LENGTH=626;; (*ITAG) Solyc10g076610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58891629-58895117 transcript_region:SL2.40ch10:58891629..58895117- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SY11_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00024340g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.83|0.76|1|0.91|0.84|13|288|455; (*GB) gi|255582668|ref|XP_002532113.1| (e_value=0.0) acyl-CoA dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q96329|ACOX4_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1;; (*TAIR) AT3G51840.1 (e_value=0.0) | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436;; (*ITAG) Solyc10g076600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58885360-58889823 transcript_region:SL2.40ch10:58885360..58889823- go_terms:GO:0055114 functional_description:"Acyl-CoA dehydrogenase (AHRD V1 ***- A3XH21_LEEBM); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00010821g0003.1 protein AED:0.17 eAED:0.17 QI:250|0.6|0.66|1|1|1|6|397|478; (*GB) gi|113205425|gb|AAU90342.2| (e_value=2e-172) Myb-like DNA-binding protein, putative [Solanum demissum];; (*SWP) sp|P92973|CCA1_ARATH (e_value=6e-27) Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1;; (*TAIR) AT1G18330.1 (e_value=9e-35) | Symbols: EPR1, RVE7 | Homeodomain-like superfamily protein | chr1:6306196-6307640 REVERSE LENGTH=346;; (*ITAG) Solyc03g098320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54111610-54115887 transcript_region:SL2.40ch03:54111610..54115887- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 *--* A1DR85_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00017796g0009.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.5|0.75|1|1|4|0|107; (*GB) gi|350535172|ref|NP_001234180.1| (e_value=1e-45) 40S ribosomal protein S25 [Solanum lycopersicum];; (*SWP) sp|P46301|RS25_SOLLC (e_value=4e-47) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1;; (*TAIR) AT4G34555.1 (e_value=1e-43) | Symbols: | Ribosomal protein S25 family protein | chr4:16504381-16505339 REVERSE LENGTH=108;; (*ITAG) Solyc10g052660.1.1 (e_value=3e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48687984-48689698 transcript_region:SL2.40ch10:48687984..48689698- go_terms:GO:0003735 functional_description:"40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE); contains Interpro domain(s) IPR004977 Ribosomal protein S25 "; GO:0003735 NbS00017796g0002.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.75|1|1|4|0|348; (*GB) gi|359474932|ref|XP_002280381.2| (e_value=2e-77) PREDICTED: F-box protein At2g16365-like [Vitis vinifera];; (*SWP) sp|Q84V03|FB348_ARATH (e_value=6e-13) F-box protein At2g16365 OS=Arabidopsis thaliana GN=At2g16365 PE=2 SV=2;; (*TAIR) AT2G16365.4 (e_value=4e-14) | Symbols: | F-box family protein | chr2:7074940-7079181 FORWARD LENGTH=727;; (*ITAG) Solyc01g109780.2.1 (e_value=8e-113) genomic_reference:SL2.40ch01 gene_region:88393338-88396861 transcript_region:SL2.40ch01:88393338..88396861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001873g0026.1 protein AED:0.18 eAED:0.18 QI:98|0.57|0.62|1|0.28|0.37|8|264|451; (*GB) gi|15224214|ref|NP_179461.1| (e_value=0.0) Preprotein translocase subunit secY [Arabidopsis thaliana];; (*SWP) sp|Q38885|SCY1_ARATH (e_value=0.0) Preprotein translocase subunit SCY1, chloroplastic OS=Arabidopsis thaliana GN=SCY1 PE=1 SV=2;; (*TAIR) AT2G18710.1 (e_value=0.0) | Symbols: SCY1 | SECY homolog 1 | chr2:8112231-8114452 REVERSE LENGTH=551;; (*ITAG) Solyc07g006520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1318128-1325502 transcript_region:SL2.40ch07:1318128..1325502- go_terms:GO:0008565,GO:0005515 functional_description:"Preprotein translocase secY subunit (AHRD V1 ***- A8IS14_CHLRE); contains Interpro domain(s) IPR002208 SecY protein "; GO:0008565,GO:0005515 NbS00001873g0025.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.75|1|1|1|4|534|917; (*GB) gi|350534654|ref|NP_001233896.1| (e_value=0.0) trehalose-6-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9ZV48|TPS11_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 OS=Arabidopsis thaliana GN=TPS11 PE=2 SV=1;; (*TAIR) AT2G18700.1 (e_value=0.0) | Symbols: ATTPS11, TPS11, ATTPSB | trehalose phosphatase/synthase 11 | chr2:8109043-8111799 FORWARD LENGTH=862;; (*ITAG) Solyc07g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1301353-1304574 transcript_region:SL2.40ch07:1301353..1304574+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** D2REU5_ARCPA); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00001873g0028.1 protein AED:0.18 eAED:0.18 QI:78|1|1|1|0.72|0.66|12|531|545; (*GB) gi|37983647|gb|AAR06293.1| (e_value=0.0) adenylosuccinate lyase [Nicotiana tabacum];; (*SWP) sp|P44797|PUR8_HAEIN (e_value=0.0) Adenylosuccinate lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purB PE=3 SV=1;; (*TAIR) AT1G36280.1 (e_value=0.0) | Symbols: | L-Aspartase-like family protein | chr1:13640600-13642908 FORWARD LENGTH=527;; (*ITAG) Solyc07g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1326181-1332288 transcript_region:SL2.40ch07:1326181..1332288+ go_terms:GO:0005515 functional_description:"Adenylosuccinate lyase (AHRD V1 ***- Q6T7E9_TOBAC); contains Interpro domain(s) IPR004769 Adenylosuccinate lyase "; GO:0005515 NbS00001873g0029.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.57|0.85|0.66|0.42|7|0|711; (*GB) gi|359484957|ref|XP_002264416.2| (e_value=0.0) PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Vitis vinifera];; (*SWP) sp|Q8L7Z0|CNG17_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1;; (*TAIR) AT4G30360.1 (e_value=0.0) | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720;; (*ITAG) Solyc07g006510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1308919-1317697 transcript_region:SL2.40ch07:1308919..1317697+ go_terms:GO:0005216,GO:0030551 functional_description:"Cyclic nucleotide-gated ion channel 18 (AHRD V1 **** D7M6N7_ARALY); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005216,GO:0030551 NbS00001873g0022.1 protein AED:0.37 eAED:0.37 QI:547|1|0.8|1|0.75|0.8|5|0|138; (*GB) gi|225439305|ref|XP_002267832.1| (e_value=7e-77) PREDICTED: 50S ribosomal protein L22, chloroplastic [Vitis vinifera];; (*SWP) sp|B2IK67|RL22_BEII9 (e_value=5e-16) 50S ribosomal protein L22 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplV PE=3 SV=1;; (*TAIR) AT4G28360.1 (e_value=2e-72) | Symbols: | Ribosomal protein L22p/L17e family protein | chr4:14029294-14030926 REVERSE LENGTH=271;; (*ITAG) Solyc04g017680.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:7754737-7758043 transcript_region:SL2.40ch04:7754737..7758043+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L22-like (AHRD V1 ***- Q5ZDK4_ORYSJ); contains Interpro domain(s) IPR005727 Ribosomal protein L22, bacterial-type "; GO:0005840,GO:0015934 NbS00005746g0008.1 protein AED:0.09 eAED:0.20 QI:0|0|0|1|0|0|2|0|113 NbS00009763g0001.1 protein AED:0.24 eAED:0.24 QI:119|0|0.5|1|0|1|2|1307|328; (*GB) gi|147774323|emb|CAN61413.1| (e_value=2e-145) hypothetical protein VITISV_029565 [Vitis vinifera];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=1e-118) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=8e-120) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295;; (*ITAG) Solyc03g025560.2.1 (e_value=9e-104) genomic_reference:SL2.40ch03 gene_region:7340332-7342535 transcript_region:SL2.40ch03:7340332..7342535+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** UPPS_PYRFU); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00009763g0002.1 protein AED:0.15 eAED:0.15 QI:79|1|1|1|0.4|0.33|6|472|151; (*GB) gi|257831431|gb|ACV71016.1| (e_value=1e-63) UPA16 [Capsicum annuum];; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=4e-46) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=3e-47) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097580.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00013168g0009.1 protein AED:0.06 eAED:0.06 QI:195|0.8|0.83|1|0.8|0.83|6|76|328; (*GB) gi|359476700|ref|XP_002266907.2| (e_value=2e-149) PREDICTED: CRAL-TRIO domain-containing protein C23B6.04c [Vitis vinifera];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=8e-25) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G75170.2 (e_value=2e-125) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc04g080290.2.1 (e_value=4e-133) genomic_reference:SL2.40ch04 gene_region:62123183-62125819 transcript_region:SL2.40ch04:62123183..62125819+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00013168g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|604; (*GB) gi|255561178|ref|XP_002521601.1| (e_value=0.0) Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q9FL03|SCL4_ARATH (e_value=0.0) Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1;; (*TAIR) AT5G66770.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr5:26660723-26662477 FORWARD LENGTH=584;; (*ITAG) Solyc02g085340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42834882-42836711 transcript_region:SL2.40ch02:42834882..42836711- go_terms:GO:0005515,GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9MXP6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbS00013168g0010.1 protein AED:0.50 eAED:0.84 QI:34|0|0.2|0.8|1|1|5|0|62 NbS00026050g0010.1 protein AED:0.14 eAED:0.15 QI:40|0.83|0.71|1|0.83|0.71|7|0|334; (*GB) gi|225435868|ref|XP_002263865.1| (e_value=9e-156) PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera];; (*SWP) sp|O81027|HMGCL_ARATH (e_value=1e-149) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2;; (*TAIR) AT2G26800.1 (e_value=3e-151) | Symbols: | Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433;; (*ITAG) Solyc01g080170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71896234-71905652 transcript_region:SL2.40ch01:71896234..71905652+ go_terms:GO:0008152,GO:0003824 functional_description:"Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase "; GO:0008152,GO:0003824 NbS00026050g0007.1 protein AED:0.32 eAED:0.32 QI:0|0.37|0.33|0.77|0.5|0.55|9|990|417; (*GB) gi|225448976|ref|XP_002270186.1| (e_value=4e-123) PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform 1 [Vitis vinifera];; (*TAIR) AT2G39140.1 (e_value=2e-108) | Symbols: SVR1 | pseudouridine synthase family protein | chr2:16330238-16333153 FORWARD LENGTH=410;; (*ITAG) Solyc11g008360.1.1 (e_value=8e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2570463-2575364 transcript_region:SL2.40ch11:2570463..2575364- go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7LCF4_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009451,GO:0003723 NbS00032537g0005.1 protein AED:0.28 eAED:0.31 QI:141|0.42|0.5|0.87|1|1|8|0|395; (*GB) gi|225469840|ref|XP_002265335.1| (e_value=7e-68) PREDICTED: uncharacterized protein LOC100258674 [Vitis vinifera];; (*TAIR) AT4G17540.1 (e_value=5e-34) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9775982-9777765 FORWARD LENGTH=294;; (*ITAG) Solyc06g060890.2.1 (e_value=4e-89) genomic_reference:SL2.40ch06 gene_region:35288453-35291763 transcript_region:SL2.40ch06:35288453..35291763+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032537g0003.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.66|1|0.5|1|3|1009|375; (*GB) gi|359497147|ref|XP_003635437.1| (e_value=2e-175) PREDICTED: putative glycerol-3-phosphate transporter 4-like, partial [Vitis vinifera];; (*SWP) sp|O23596|GLPT4_ARATH (e_value=3e-162) Putative glycerol-3-phosphate transporter 4 OS=Arabidopsis thaliana GN=At4g17550 PE=2 SV=2;; (*TAIR) AT4G17550.1 (e_value=2e-163) | Symbols: | Major facilitator superfamily protein | chr4:9777938-9779738 REVERSE LENGTH=544;; (*ITAG) Solyc06g060910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35296101-35300540 transcript_region:SL2.40ch06:35296101..35300540- go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** B0SG38_LEPBA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00032537g0004.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|135 NbS00046424g0006.1 protein AED:0.08 eAED:0.10 QI:173|1|0.66|1|1|1|3|0|411; (*GB) gi|356520139|ref|XP_003528722.1| (e_value=5e-113) PREDICTED: putative NAC domain-containing protein 94-like [Glycine max];; (*SWP) sp|Q9FIW5|NAC94_ARATH (e_value=1e-57) Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=2 SV=1;; (*TAIR) AT2G02450.2 (e_value=3e-106) | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC domain containing protein 35 | chr2:648044-650649 FORWARD LENGTH=414;; (*ITAG) Solyc01g102740.2.1 (e_value=2e-141) genomic_reference:SL2.40ch01 gene_region:83236708-83238761 transcript_region:SL2.40ch01:83236708..83238761+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9GVP9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00001370g0018.1 protein AED:0.27 eAED:0.28 QI:1862|0.28|0.37|0.87|0.85|0.75|8|0|389; (*GB) gi|297733989|emb|CBI15236.3| (e_value=3e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=8e-158) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=6e-159) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc06g069870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39892312-39896352 transcript_region:SL2.40ch06:39892312..39896352+ functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00001370g0017.1 protein AED:0.28 eAED:0.31 QI:192|0.75|0.8|1|0.75|1|5|0|661; (*GB) gi|147771208|emb|CAN67544.1| (e_value=7e-128) hypothetical protein VITISV_030948 [Vitis vinifera];; (*SWP) sp|Q15650|TRIP4_HUMAN (e_value=9e-23) Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4;; (*TAIR) AT3G47610.1 (e_value=3e-112) | Symbols: | transcription regulators;zinc ion binding | chr3:17549178-17551204 FORWARD LENGTH=408;; (*ITAG) Solyc03g116140.2.1 (e_value=2e-166) genomic_reference:SL2.40ch03 gene_region:59688614-59692801 transcript_region:SL2.40ch03:59688614..59692801+ go_terms:GO:0005634 functional_description:"Activating signal cointegrator 1 (AHRD V1 **-- C3KH38_ANOFI); contains Interpro domain(s) IPR009349 Zinc finger, C2HC5-type "; GO:0005634 NbS00001370g0021.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|1|1|2|0|437; (*GB) gi|297733990|emb|CBI15237.3| (e_value=6e-78) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SWI1|PKS1_ARATH (e_value=2e-23) Protein PHYTOCHROME KINASE SUBSTRATE 1 OS=Arabidopsis thaliana GN=PKS1 PE=1 SV=2;; (*TAIR) AT2G02950.1 (e_value=1e-24) | Symbols: PKS1 | phytochrome kinase substrate 1 | chr2:855149-856468 REVERSE LENGTH=439;; (*ITAG) Solyc03g116160.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59702667-59704016 transcript_region:SL2.40ch03:59702667..59704016+ functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; NbS00001370g0019.1 protein AED:0.16 eAED:0.16 QI:0|0.2|0|1|0.4|0.33|6|0|523; (*GB) gi|297733983|emb|CBI15230.3| (e_value=8e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CA57|GSTUA_ARATH (e_value=9e-72) Glutathione S-transferase U10 OS=Arabidopsis thaliana GN=GSTU10 PE=2 SV=1;; (*TAIR) AT1G74590.1 (e_value=7e-73) | Symbols: ATGSTU10, GSTU10 | glutathione S-transferase TAU 10 | chr1:28023887-28024666 REVERSE LENGTH=232;; (*ITAG) Solyc03g116120.1.1 (e_value=2e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59682321-59683060 transcript_region:SL2.40ch03:59682321..59683060- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 12 (AHRD V1 **** Q4LAW7_CAPCH); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00020019g0005.1 protein AED:0.00 eAED:0.00 QI:281|1|1|1|0.5|1|3|339|400; (*GB) gi|147853140|emb|CAN80689.1| (e_value=3e-118) hypothetical protein VITISV_005501 [Vitis vinifera];; (*SWP) sp|Q9SKN2|DRB2_ARATH (e_value=2e-107) Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1;; (*TAIR) AT2G28380.1 (e_value=1e-108) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc11g069460.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51130373-51136647 transcript_region:SL2.40ch11:51130373..51136647+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein 2 (AHRD V1 ***- D7LHN0_ARALY); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00028755g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|57013956|ref|YP_173428.1| (e_value=5e-43) hypothetical protein NitaMp089 [Nicotiana tabacum];; (*ITAG) Solyc07g065770.2.1 (e_value=6e-38) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00039176g0004.1 protein AED:0.11 eAED:0.11 QI:129|0.85|0.75|1|0.85|0.75|8|291|468; (*GB) gi|359475174|ref|XP_003631609.1| (e_value=0.0) PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500-like [Vitis vinifera];; (*SWP) sp|Q6NKZ9|Y4345_ARATH (e_value=0.0) Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1;; (*TAIR) AT4G34500.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:16488005-16490792 REVERSE LENGTH=437;; (*ITAG) Solyc01g109590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88251015-88255222 transcript_region:SL2.40ch01:88251015..88255222- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001056g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|849; (*GB) gi|359491313|ref|XP_002284678.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g61350 [Vitis vinifera];; (*SWP) sp|Q9FLJ8|Y5613_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1;; (*TAIR) AT5G61350.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:24667973-24670501 FORWARD LENGTH=842;; (*ITAG) Solyc03g115710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59398346-59400889 transcript_region:SL2.40ch03:59398346..59400889- go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00001056g0051.1 protein AED:0.08 eAED:0.08 QI:0|0.42|0.5|1|0.42|0.37|8|0|534; (*GB) gi|359491315|ref|XP_002281757.2| (e_value=0.0) PREDICTED: two-component response regulator-like APRR1-like [Vitis vinifera];; (*SWP) sp|Q9LKL2|APRR1_ARATH (e_value=1e-124) Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1;; (*TAIR) AT5G61380.1 (e_value=8e-126) | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618;; (*ITAG) Solyc03g115770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59430792-59436633 transcript_region:SL2.40ch03:59430792..59436633- go_terms:GO:0030528,GO:0010843 functional_description:"Timing of CAB expression-like"; GO:0030528,GO:0010843 NbS00001056g0038.1 protein AED:0.12 eAED:0.12 QI:254|1|1|1|0.83|0.71|7|320|470; (*GB) gi|225457353|ref|XP_002281793.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera];; (*TAIR) AT5G07710.1 (e_value=1e-170) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:2453310-2455357 FORWARD LENGTH=468;; (*ITAG) Solyc03g115780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59441014-59444756 transcript_region:SL2.40ch03:59441014..59444756- go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00001056g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0|2|502|450; (*GB) gi|55956988|emb|CAI11458.1| (e_value=0.0) putative glycosyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=0.0) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=0.0) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc03g115740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00001056g0053.1 protein AED:0.16 eAED:0.16 QI:163|0.92|1|1|0.84|0.85|14|80|385; (*GB) gi|255547323|ref|XP_002514719.1| (e_value=3e-160) kinase, putative [Ricinus communis];; (*SWP) sp|Q9D4H7|LONF3_MOUSE (e_value=8e-31) LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1;; (*TAIR) AT1G18660.4 (e_value=3e-149) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:6421433-6425489 FORWARD LENGTH=491;; (*ITAG) Solyc03g115720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59402193-59411198 transcript_region:SL2.40ch03:59402193..59411198- go_terms:GO:0006508,GO:0005488,GO:0008270 functional_description:"ATP-dependent protease La (LON) domain (AHRD V1 *--- A3YXA7_9SYNE); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508,GO:0005488,GO:0008270 NbS00001056g0006.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|429; (*GB) gi|225457355|ref|XP_002281803.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=6e-99) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=5e-100) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc03g115790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59445491-59447149 transcript_region:SL2.40ch03:59445491..59447149- go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00001056g0036.1 protein AED:0.30 eAED:0.30 QI:413|1|0.5|1|1|1|2|0|265; (*GB) gi|225428900|ref|XP_002282529.1| (e_value=3e-108) PREDICTED: receptor protein kinase-like protein At4g34220-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=2e-99) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=1e-100) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc06g073240.2.1 (e_value=4e-140) genomic_reference:SL2.40ch06 gene_region:41521151-41523182 transcript_region:SL2.40ch06:41521151..41523182- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00001056g0054.1 protein AED:0.35 eAED:0.35 QI:38|0.66|0.5|1|0.33|0.75|4|10|71; (*ITAG) Solyc03g115720.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:59402193-59411198 transcript_region:SL2.40ch03:59402193..59411198- go_terms:GO:0006508,GO:0005488,GO:0008270 functional_description:"ATP-dependent protease La (LON) domain (AHRD V1 *--- A3YXA7_9SYNE); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508,GO:0005488,GO:0008270 NbS00001056g0035.1 protein AED:0.35 eAED:0.40 QI:0|0.85|0.62|1|0.85|0.75|8|0|278; (*GB) gi|2499728|sp|Q43843.1|RPE_SOLTU (e_value=1e-173) RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor;; (*SWP) sp|Q43843|RPE_SOLTU (e_value=3e-175) Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G61410.2 (e_value=2e-162) | Symbols: RPE | D-ribulose-5-phosphate-3-epimerase | chr5:24684085-24685836 REVERSE LENGTH=281;; (*ITAG) Solyc03g115820.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:59463075-59469502 transcript_region:SL2.40ch03:59463075..59469502- go_terms:GO:0005515 functional_description:"Ribulose-5-phosphate-3-epimerase (AHRD V1 ***- Q8S4X2_PEA); contains Interpro domain(s) IPR000056 Ribulose-phosphate 3-epimerase "; GO:0005515 NbS00001056g0007.1 protein AED:0.38 eAED:0.49 QI:0|0|0.5|1|0|1|2|95|158; (*GB) gi|297733949|emb|CBI15196.3| (e_value=4e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CAY1|PP223_ARATH (e_value=2e-36) Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1;; (*TAIR) AT3G11460.1 (e_value=1e-37) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3608250-3610121 FORWARD LENGTH=623;; (*ITAG) Solyc03g115790.1.1 (e_value=5e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59445491-59447149 transcript_region:SL2.40ch03:59445491..59447149- go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00001056g0057.1 protein AED:0.22 eAED:0.22 QI:142|1|1|1|0.9|0.81|11|295|504; (*GB) gi|350538067|ref|NP_001234325.1| (e_value=0.0) SNF1-related protein kinase [Solanum lycopersicum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.3 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512;; (*ITAG) Solyc03g115700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59393788-59397846 transcript_region:SL2.40ch03:59393788..59397846+ go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase alpha-2 catalytic subunit (AHRD V1 **** Q2LAI0_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00001056g0005.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|359491319|ref|XP_002281821.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g74400-like [Vitis vinifera];; (*SWP) sp|Q9CA73|PP119_ARATH (e_value=1e-134) Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1;; (*TAIR) AT1G74400.1 (e_value=1e-135) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:27963953-27965341 FORWARD LENGTH=462;; (*ITAG) Solyc03g115800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59447518-59448798 transcript_region:SL2.40ch03:59447518..59448798+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00001056g0045.1 protein AED:0.26 eAED:0.26 QI:255|1|0.83|1|0.8|0.66|6|0|221; (*GB) gi|78191454|gb|ABB29948.1| (e_value=3e-141) vesicle transport v-SNARE 11-like [Solanum tuberosum];; (*SWP) sp|Q9LVP9|VTI13_ARATH (e_value=2e-113) Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1;; (*TAIR) AT5G39510.1 (e_value=3e-111) | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 | Vesicle transport v-SNARE family protein | chr5:15822035-15823591 FORWARD LENGTH=221;; (*ITAG) Solyc03g115760.2.1 (e_value=3e-141) genomic_reference:SL2.40ch03 gene_region:59426055-59429910 transcript_region:SL2.40ch03:59426055..59429910+ go_terms:GO:0004872 functional_description:"Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0004872 NbS00001056g0055.1 protein AED:0.22 eAED:0.30 QI:0|0|0|1|0|0.2|5|0|328; (*GB) gi|225457363|ref|XP_002284788.1| (e_value=5e-114) PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9M5Q1|FUT1_PEA (e_value=4e-98) Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1;; (*TAIR) AT2G03220.1 (e_value=2e-91) | Symbols: FT1, ATFUT1, ATFT1, MUR2 | fucosyltransferase 1 | chr2:970401-972353 REVERSE LENGTH=558;; (*ITAG) Solyc03g115830.1.1 (e_value=1e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59474331-59476338 transcript_region:SL2.40ch03:59474331..59476338+ go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00001056g0030.1 protein AED:0.42 eAED:0.46 QI:0|0.53|0.5|0.85|1|1|14|0|497; (*GB) gi|225435323|ref|XP_002285170.1| (e_value=0.0) PREDICTED: vacuolar fusion protein MON1 homolog A [Vitis vinifera];; (*SWP) sp|Q17QV2|MON1A_BOVIN (e_value=9e-35) Vacuolar fusion protein MON1 homolog A OS=Bos taurus GN=MON1A PE=2 SV=1;; (*TAIR) AT2G28390.1 (e_value=0.0) | Symbols: | SAND family protein | chr2:12139836-12143375 REVERSE LENGTH=607;; (*ITAG) Solyc03g115810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59451563-59462697 transcript_region:SL2.40ch03:59451563..59462697+ functional_description:"Vacuolar fusion protein mon1 (AHRD V1 ***- C5JTA2_AJEDS); contains Interpro domain(s) IPR004353 Vacuolar fusion protein MON1 "; NbS00001056g0059.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|614; (*GB) gi|359478627|ref|XP_002280815.2| (e_value=0.0) PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Vitis vinifera];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=0.0) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT2G29040.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr2:12472425-12474962 REVERSE LENGTH=720;; (*ITAG) Solyc03g115750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59422877-59424604 transcript_region:SL2.40ch03:59422877..59424604+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00060432g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|0.66|0.5|4|382|560; (*GB) gi|224081457|ref|XP_002306417.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7SXW3|LRC40_DANRE (e_value=4e-41) Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1;; (*TAIR) AT4G35470.1 (e_value=0.0) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc02g082350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40624956-40627650 transcript_region:SL2.40ch02:40624956..40627650+ go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00018818g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|224078904|ref|XP_002305674.1| (e_value=4e-133) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WW40|FBK5_ARATH (e_value=6e-20) F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1;; (*TAIR) AT1G16250.1 (e_value=5e-21) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5557214-5558697 FORWARD LENGTH=383;; (*ITAG) Solyc02g078710.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:37955559-37956662 transcript_region:SL2.40ch02:37955559..37956662+ functional_description:"Kelch-like 8 (AHRD V1 *-*- Q28D69_XENTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00018818g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|138; (*GB) gi|296088905|emb|CBI38454.3| (e_value=2e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54X16|U559_DICDI (e_value=1e-52) UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2;; (*TAIR) AT1G61150.6 (e_value=6e-72) | Symbols: | LisH and RanBPM domains containing protein | chr1:22542979-22544355 FORWARD LENGTH=226;; (*ITAG) Solyc03g006580.2.1 (e_value=5e-80) genomic_reference:SL2.40ch03 gene_region:1153790-1163207 transcript_region:SL2.40ch03:1153790..1163207+ go_terms:GO:0005515 functional_description:"Ran-binding proteins 9/10 homolog (AHRD V1 *--* RBP9X_DROME); contains Interpro domain(s) IPR019589 Ran binding protein, CRA domain "; GO:0005515 NbS00018818g0004.1 protein AED:0.35 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|78 NbS00007048g0008.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|0|0|2|0|602; (*GB) gi|359486383|ref|XP_002273437.2| (e_value=0.0) PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Vitis vinifera];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=1e-118) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=3e-177) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc03g095850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:50983692-50985473 transcript_region:SL2.40ch03:50983692..50985473- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00007048g0109.1 protein AED:0.08 eAED:0.08 QI:82|1|1|1|1|1|3|253|268 NbS00007048g0108.1 protein AED:0.29 eAED:0.29 QI:0|0.85|0.75|1|0.85|0.75|8|348|320 NbS00009095g0002.1 protein AED:0.28 eAED:0.28 QI:52|1|1|1|1|1|2|257|315; (*GB) gi|359482026|ref|XP_002275955.2| (e_value=6e-76) PREDICTED: B3 domain-containing protein At2g36080-like [Vitis vinifera];; (*SWP) sp|Q8GYJ2|Y2608_ARATH (e_value=2e-64) B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1;; (*TAIR) AT2G36080.1 (e_value=1e-65) | Symbols: | AP2/B3-like transcriptional factor family protein | chr2:15148612-15151411 REVERSE LENGTH=244;; (*ITAG) Solyc10g083210.1.1 (e_value=2e-102) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:62400932-62405454 transcript_region:SL2.40ch10:62400932..62405454+ go_terms:GO:0006355 functional_description:"Auxin response factor 1 (AHRD V1 *-*- D9HNS8_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00051387g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|155; (*GB) gi|351727799|ref|NP_001237429.1| (e_value=3e-39) uncharacterized protein LOC100305838 [Glycine max];; (*ITAG) Solyc07g005380.2.1 (e_value=6e-87) genomic_reference:SL2.40ch07 gene_region:291108-292521 transcript_region:SL2.40ch07:291108..292521+ go_terms:GO:0009607 functional_description:"Pathogenesis-related (PR)-10-related norcoclaurine synthase-like protein (AHRD V1 **-- C3SBS5_ESCCA); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00026635g0004.1 protein AED:0.14 eAED:0.14 QI:394|1|0.5|1|1|0.5|2|0|357; (*GB) gi|356526387|ref|XP_003531799.1| (e_value=6e-147) PREDICTED: putative kinase-like protein TMKL1-like [Glycine max];; (*SWP) sp|P33543|TMKL1_ARATH (e_value=1e-66) Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1;; (*TAIR) AT5G07620.1 (e_value=2e-128) | Symbols: | Protein kinase superfamily protein | chr5:2407401-2409066 REVERSE LENGTH=359;; (*ITAG) Solyc03g093460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48193374-48195675 transcript_region:SL2.40ch03:48193374..48195675- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW26_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006204g0010.1 protein AED:0.43 eAED:0.43 QI:89|1|0.75|1|1|1|4|0|183; (*GB) gi|113196591|gb|ABI31652.1| (e_value=1e-99) 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis];; (*SWP) sp|Q9SGW3|RP12A_ARATH (e_value=1e-92) 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1;; (*TAIR) AT1G64520.1 (e_value=9e-94) | Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267;; (*ITAG) Solyc08g082700.2.1 (e_value=5e-109) genomic_reference:SL2.40ch08 gene_region:62568517-62573377 transcript_region:SL2.40ch08:62568517..62573377+ go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 8 (AHRD V1 ***- B4FCY9_MAIZE); contains Interpro domain(s) IPR006746 26S proteasome non-ATPase regulatory subunit Rpn12 "; GO:0005515,GO:0004175 NbS00006204g0005.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.75|1|1|4|0|81 NbS00012207g0001.1 protein AED:0.40 eAED:0.60 QI:0|0|0.2|0.8|1|1|5|0|167; (*GB) gi|255536745|ref|XP_002509439.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g077750.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:37193303-37193923 transcript_region:SL2.40ch02:37193303..37193923+ functional_description:"Fiber protein Fb2 (AHRD V1 **-- B3TLS9_ELAGV); contains Interpro domain(s) IPR008598 Drought induced 19 "; NbS00058262g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|348; (*GB) gi|225459168|ref|XP_002285717.1| (e_value=2e-155) PREDICTED: purine permease 3 [Vitis vinifera];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-132) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-133) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc07g008440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3314726-3318115 transcript_region:SL2.40ch07:3314726..3318115- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00010767g0001.1 protein AED:0.11 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|255550544|ref|XP_002516322.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g076380.1.1 (e_value=4e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:43842038-43842325 transcript_region:SL2.40ch06:43842038..43842325+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010767g0005.1 protein AED:0.34 eAED:0.35 QI:0|0.6|0.63|1|0.7|0.72|11|0|420; (*GB) gi|255558990|ref|XP_002520518.1| (e_value=1e-101) protein with unknown function [Ricinus communis];; (*TAIR) AT1G07480.2 (e_value=1e-61) | Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296706-2299215 REVERSE LENGTH=375;; (*ITAG) Solyc06g076390.2.1 (e_value=2e-138) genomic_reference:SL2.40ch06 gene_region:43843183-43849644 transcript_region:SL2.40ch06:43843183..43849644- go_terms:GO:0003700 functional_description:"Transcription initiation factor IIA subunit 1 (AHRD V1 *-** TF2AA_DICDI); contains Interpro domain(s) IPR004855 Transcription factor IIA, alpha/beta subunit "; GO:0003700 NbS00008702g0003.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|1|1|2|0|122; (*GB) gi|298205059|emb|CBI38355.3| (e_value=3e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G23690.1 (e_value=6e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=7e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00008702g0001.1 protein AED:0.19 eAED:0.28 QI:48|0|0|1|1|1|2|0|138; (*GB) gi|384038819|gb|AFH58000.1| (e_value=1e-80) chloroplast PsbO4 precursor [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=1e-81) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=3e-75) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g065400.2.1 (e_value=1e-80) genomic_reference:SL2.40ch02 gene_region:31151784-31154764 transcript_region:SL2.40ch02:31151784..31154764+ go_terms:GO:0008266,GO:0005515 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266,GO:0005515 NbS00042462g0004.1 protein AED:0.19 eAED:0.20 QI:124|1|0.8|1|0.75|0.6|5|0|375; (*GB) gi|225457425|ref|XP_002284929.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260374 [Vitis vinifera];; (*TAIR) AT1G74640.1 (e_value=1e-168) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370;; (*ITAG) Solyc03g116110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59675160-59679638 transcript_region:SL2.40ch03:59675160..59679638- functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 ***- B2J569_NOSP7)"; NbS00028985g0004.1 protein AED:0.39 eAED:0.39 QI:60|0.66|0.75|1|1|1|4|0|248; (*GB) gi|359474959|ref|XP_003631559.1| (e_value=1e-82) PREDICTED: ser/Thr-rich protein T10 in DGCR region-like [Vitis vinifera];; (*SWP) sp|P54797|T10_MOUSE (e_value=2e-26) Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2 SV=1;; (*TAIR) AT4G38260.1 (e_value=1e-74) | Symbols: | Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275;; (*ITAG) Solyc02g021340.2.1 (e_value=3e-105) genomic_reference:SL2.40ch02 gene_region:13199689-13206298 transcript_region:SL2.40ch02:13199689..13206298+ go_terms:GO:0005515 functional_description:"Ser/Thr-rich protein T10 in DGCR region (AHRD V1 **-- B6TDB2_MAIZE); contains Interpro domain(s) IPR008551 Protein of unknown function DUF833 "; GO:0005515 NbS00028985g0006.1 protein AED:0.46 eAED:0.46 QI:0|0.25|0.4|0.8|0.25|0.4|5|0|131; (*GB) gi|359474959|ref|XP_003631559.1| (e_value=5e-35) PREDICTED: ser/Thr-rich protein T10 in DGCR region-like [Vitis vinifera];; (*TAIR) AT4G38260.1 (e_value=6e-22) | Symbols: | Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275;; (*ITAG) Solyc02g021340.2.1 (e_value=9e-63) genomic_reference:SL2.40ch02 gene_region:13199689-13206298 transcript_region:SL2.40ch02:13199689..13206298+ go_terms:GO:0005515 functional_description:"Ser/Thr-rich protein T10 in DGCR region (AHRD V1 **-- B6TDB2_MAIZE); contains Interpro domain(s) IPR008551 Protein of unknown function DUF833 "; GO:0005515 NbC24741200g0001.1 protein AED:0.04 eAED:0.50 QI:75|-1|0|1|-1|1|1|0|27 NbS00003677g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|372; (*GB) gi|225450539|ref|XP_002277347.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=2e-116) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=2e-117) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc01g100790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003677g0009.1 protein AED:0.24 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|0|555; (*GB) gi|225450537|ref|XP_002277327.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Vitis vinifera];; (*SWP) sp|Q9FXA9|PPR83_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1;; (*TAIR) AT1G56570.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21195804-21197721 FORWARD LENGTH=611;; (*ITAG) Solyc01g100800.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82496013-82497982 transcript_region:SL2.40ch01:82496013..82497982- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB47_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00003677g0008.1 protein AED:0.42 eAED:0.42 QI:0|1|0.33|1|0|0|3|213|75 NbS00011769g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|147792209|emb|CAN72978.1| (e_value=2e-59) hypothetical protein VITISV_009029 [Vitis vinifera];; (*SWP) sp|P26861|RM06_MARPO (e_value=5e-47) 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2;; (*TAIR) AT2G18400.1 (e_value=5e-56) | Symbols: | ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102;; (*ITAG) Solyc02g085280.1.1 (e_value=4e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42805687-42805995 transcript_region:SL2.40ch02:42805687..42805995- go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- A6NXE5_9BACE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00011769g0024.1 protein AED:0.12 eAED:0.12 QI:185|0.8|0.83|1|0.6|0.5|6|202|279; (*GB) gi|297735160|emb|CBI17522.3| (e_value=2e-140) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UU99|YJX4_SCHPO (e_value=4e-29) CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC23B6.04c PE=1 SV=1;; (*TAIR) AT1G75170.2 (e_value=2e-124) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc02g085300.2.1 (e_value=2e-139) genomic_reference:SL2.40ch02 gene_region:42815858-42817352 transcript_region:SL2.40ch02:42815858..42817352- go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00011769g0002.1 protein AED:0.21 eAED:0.21 QI:69|0.85|0.87|1|1|1|8|191|196; (*GB) gi|359476695|ref|XP_003631878.1| (e_value=2e-78) PREDICTED: maf-like protein DDB_G0281937 isoform 2 [Vitis vinifera];; (*SWP) sp|Q54TC5|MAFL2_DICDI (e_value=2e-18) Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum GN=DDB_G0281937 PE=3 SV=1;; (*TAIR) AT5G66550.1 (e_value=1e-65) | Symbols: | Maf-like protein | chr5:26559752-26561162 REVERSE LENGTH=207;; (*ITAG) Solyc02g085290.2.1 (e_value=1e-104) genomic_reference:SL2.40ch02 gene_region:42809743-42814096 transcript_region:SL2.40ch02:42809743..42814096- go_terms:GO:0042802 functional_description:"Maf-like protein expressed (AHRD V1 ***- Q2R2T0_ORYSJ); contains Interpro domain(s) IPR003697 Maf-like protein "; GO:0042802 NbS00011769g0025.1 protein AED:0.27 eAED:0.27 QI:319|0.5|0.33|0.66|1|0.66|3|0|108 NbS00029796g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|313586565|gb|ADR71293.1| (e_value=4e-17) hypothetical protein 17 [Hevea brasiliensis];; (*ITAG) Solyc12g008560.1.1 (e_value=1e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1952805-1953047 transcript_region:SL2.40ch12:1952805..1953047- functional_description:"Unknown Protein (AHRD V1)"; NbS00029796g0007.1 protein AED:0.24 eAED:0.24 QI:206|0.62|0.44|1|0.75|0.77|9|258|556; (*GB) gi|359484534|ref|XP_002283565.2| (e_value=0.0) PREDICTED: probable glutamate carboxypeptidase 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M1S8|GCP2_ARATH (e_value=3e-98) Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3;; (*TAIR) AT5G19740.1 (e_value=0.0) | Symbols: | Peptidase M28 family protein | chr5:6673986-6676767 FORWARD LENGTH=681;; (*ITAG) Solyc11g045250.1.1 (e_value=6e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37043969-37057788 transcript_region:SL2.40ch11:37043969..37057788- go_terms:GO:0006508 functional_description:"N-acetylated alpha-linked acidic dipeptidase 2 (AHRD V1 **-- Q3UZV6_MOUSE); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00007348g0015.1 protein AED:0.11 eAED:0.17 QI:0|0.66|0.28|1|0.5|0.57|7|0|436; (*GB) gi|225428454|ref|XP_002284113.1| (e_value=4e-108) PREDICTED: transcription factor bHLH63-like [Vitis vinifera];; (*SWP) sp|Q8GY61|BH063_ARATH (e_value=2e-53) Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1;; (*TAIR) AT4G34530.1 (e_value=1e-54) | Symbols: CIB1 | cryptochrome-interacting basic-helix-loop-helix 1 | chr4:16498466-16499946 FORWARD LENGTH=335;; (*ITAG) Solyc01g109700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88355753-88358914 transcript_region:SL2.40ch01:88355753..88358914+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00007348g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0.5|1|1|1|2|264|123 NbS00007348g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|225432542|ref|XP_002277699.1| (e_value=9e-30) PREDICTED: basic 7S globulin-like [Vitis vinifera];; (*TAIR) AT1G03220.1 (e_value=4e-20) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc03g115040.2.1 (e_value=1e-45) genomic_reference:SL2.40ch03 gene_region:58935701-58937532 transcript_region:SL2.40ch03:58935701..58937532+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00007348g0008.1 protein AED:0.55 eAED:1.00 QI:0|0|0|0.6|1|1|5|0|219 NbS00007348g0014.1 protein AED:0.20 eAED:0.34 QI:0|0|0|1|0|0|2|0|94; (*ITAG) Solyc01g007030.2.1 (e_value=5e-15) genomic_reference:SL2.40ch01 gene_region:1583240-1584704 transcript_region:SL2.40ch01:1583240..1584704- go_terms:GO:0005488 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00002557g0017.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0|2|0|98; (*GB) gi|10798752|dbj|BAB16428.1| (e_value=6e-24) P-rich protein EIG-I30 [Nicotiana tabacum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=4e-12) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12500.1 (e_value=5e-16) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7414369-7414902 REVERSE LENGTH=177;; (*ITAG) Solyc08g078870.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59728469-59728909 transcript_region:SL2.40ch08:59728469..59728909+ go_terms:GO:0008289 functional_description:"Proline-rich protein (AHRD V1 **-- Q41125_PHAVU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00002557g0012.1 protein AED:0.19 eAED:0.19 QI:96|1|0.75|1|1|1|4|0|143; (*ITAG) Solyc08g078840.2.1 (e_value=6e-63) genomic_reference:SL2.40ch08 gene_region:59707376-59710158 transcript_region:SL2.40ch08:59707376..59710158+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002557g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|284; (*GB) gi|356514244|ref|XP_003525816.1| (e_value=3e-20) PREDICTED: uncharacterized protein LOC100807391 [Glycine max];; (*TAIR) AT1G62500.1 (e_value=3e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23132181-23133074 FORWARD LENGTH=297;; (*ITAG) Solyc08g078890.1.1 (e_value=6e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59737899-59738777 transcript_region:SL2.40ch08:59737899..59738777+ go_terms:GO:0006869 functional_description:"At2g10940-like protein (Fragment) (AHRD V1 *-*- B3SKI0_ARAHA); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00002557g0013.1 protein AED:0.39 eAED:0.39 QI:197|1|1|1|1|1|4|226|125; (*GB) gi|224125184|ref|XP_002329914.1| (e_value=5e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK0|NDUB8_ARATH (e_value=2e-66) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1;; (*TAIR) AT5G47570.1 (e_value=2e-67) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19292869-19294666 REVERSE LENGTH=125;; (*ITAG) Solyc08g078860.2.1 (e_value=4e-72) genomic_reference:SL2.40ch08 gene_region:59718819-59724122 transcript_region:SL2.40ch08:59718819..59724122+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q010L3_OSTTA)"; NbS00002557g0014.1 protein AED:0.34 eAED:0.34 QI:55|0.75|0.6|1|0.5|0.8|5|360|201; (*GB) gi|356514256|ref|XP_003525822.1| (e_value=6e-89) PREDICTED: uncharacterized protein LOC100815424 [Glycine max];; (*TAIR) AT4G16510.1 (e_value=6e-81) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr4:9302816-9304869 FORWARD LENGTH=232;; (*ITAG) Solyc08g007410.2.1 (e_value=2e-86) genomic_reference:SL2.40ch08 gene_region:1974157-1978006 transcript_region:SL2.40ch08:1974157..1978006- functional_description:"YbaK/prolyl-tRNA synthetase-like protein (AHRD V1 ***- A8JCE5_CHLRE); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00015731g0004.1 protein AED:0.34 eAED:0.35 QI:0|0.35|0.46|0.8|0.92|1|15|216|479; (*GB) gi|255561192|ref|XP_002521608.1| (e_value=8e-112) U1 small nuclear ribonucleoprotein 70 kDa, putative [Ricinus communis];; (*SWP) sp|Q42404|RU17_ARATH (e_value=1e-108) U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1;; (*TAIR) AT3G50670.1 (e_value=8e-110) | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE LENGTH=427;; (*ITAG) Solyc02g085420.2.1 (e_value=9e-129) genomic_reference:SL2.40ch02 gene_region:42904687-42910671 transcript_region:SL2.40ch02:42904687..42910671- go_terms:GO:0003676,GO:0000166 functional_description:"U1 small nuclear ribonucleoprotein (AHRD V1 *-*- A8J8G5_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00011563g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|0|0.25|4|469|200; (*GB) gi|255567873|ref|XP_002524914.1| (e_value=2e-85) rer1 protein, putative [Ricinus communis];; (*SWP) sp|O48670|RER1A_ARATH (e_value=5e-72) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=4e-73) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc04g078510.2.1 (e_value=2e-91) genomic_reference:SL2.40ch04 gene_region:60824846-60828559 transcript_region:SL2.40ch04:60824846..60828559+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00011563g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|538; (*GB) gi|255538200|ref|XP_002510165.1| (e_value=0.0) skip-2, putative [Ricinus communis];; (*SWP) sp|Q9C626|FB37_ARATH (e_value=0.0) F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1;; (*TAIR) AT1G47056.1 (e_value=0.0) | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276103-17277659 REVERSE LENGTH=518;; (*ITAG) Solyc04g078490.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60818556-60820160 transcript_region:SL2.40ch04:60818556..60820160+ functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 *-*- B4G0B1_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00011563g0001.1 protein AED:0.44 eAED:0.72 QI:0|0|0.5|1|0|0.5|2|63|79; (*GB) gi|359806244|ref|NP_001240956.1| (e_value=1e-15) uncharacterized protein LOC100777095 [Glycine max];; (*ITAG) Solyc07g020960.2.1 (e_value=7e-21) genomic_reference:SL2.40ch07 gene_region:15040089-15044408 transcript_region:SL2.40ch07:15040089..15044408+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00059588g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|297745558|emb|CBI40723.3| (e_value=2e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6YRM6|Y8219_ORYSJ (e_value=1e-37) UPF0392 protein Os08g0121900 OS=Oryza sativa subsp. japonica GN=Os08g0121900 PE=2 SV=1;; (*TAIR) AT4G37420.1 (e_value=6e-40) | Symbols: | Domain of unknown function (DUF23) | chr4:17593123-17594889 FORWARD LENGTH=588;; (*ITAG) Solyc04g082520.1.1 (e_value=4e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63765366-63766988 transcript_region:SL2.40ch04:63765366..63766988- functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00059588g0004.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|0|0|2|0|311; (*GB) gi|297745558|emb|CBI40723.3| (e_value=6e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|B9SLR1|Y231_RICCO (e_value=3e-38) UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0530710 PE=3 SV=1;; (*TAIR) AT4G37420.1 (e_value=2e-78) | Symbols: | Domain of unknown function (DUF23) | chr4:17593123-17594889 FORWARD LENGTH=588;; (*ITAG) Solyc04g082520.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63765366-63766988 transcript_region:SL2.40ch04:63765366..63766988- functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00060333g0004.1 protein AED:0.06 eAED:0.06 QI:1072|0.75|0.8|1|0.5|0.6|5|0|674; (*GB) gi|225454246|ref|XP_002274895.1| (e_value=2e-106) PREDICTED: uncharacterized protein LOC100258456 [Vitis vinifera];; (*TAIR) AT4G00440.2 (e_value=2e-35) | Symbols: | Protein of unknown function (DUF3741) | chr4:195176-198225 FORWARD LENGTH=835;; (*ITAG) Solyc01g094640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77836349-77842064 transcript_region:SL2.40ch01:77836349..77842064- functional_description:"( related) (AHRD V1 ***- Q2HTJ8_MEDTR)"; NbS00023225g0002.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|0|0|2|0|75; (*ITAG) Solyc08g016290.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00016820g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0.9|1|0.88|0.9|10|759|324; (*GB) gi|8096273|dbj|BAA95791.1| (e_value=8e-173) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G19660.2 (e_value=3e-142) | Symbols: | Wound-responsive family protein | chr1:6800361-6802240 REVERSE LENGTH=329;; (*ITAG) Solyc04g080700.2.1 (e_value=2e-141) genomic_reference:SL2.40ch04 gene_region:62383826-62386863 transcript_region:SL2.40ch04:62383826..62386863- functional_description:"Wound responsive protein (Fragment) (AHRD V1 **-- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00039071g0001.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.66|1|0.5|1|3|466|350; (*GB) gi|224065605|ref|XP_002301880.1| (e_value=3e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=1e-42) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=6e-126) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc04g005650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:419666-420718 transcript_region:SL2.40ch04:419666..420718- go_terms:GO:0005515,GO:0051724 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515,GO:0051724 NbS00034850g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.25|1|1|1|4|0|476; (*GB) gi|224053575|ref|XP_002297880.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZJ1|IRX10_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1;; (*TAIR) AT1G27440.1 (e_value=0.0) | Symbols: GUT2, IRX10, ATGUT1 | Exostosin family protein | chr1:9529265-9531213 REVERSE LENGTH=412;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00034850g0007.1 protein AED:0.77 eAED:1.00 QI:0|0|0|0.66|0|0|3|0|82 NbS00046458g0003.1 protein AED:0.33 eAED:0.35 QI:0|0.5|0|1|0.5|0.66|3|0|227; (*GB) gi|356495723|ref|XP_003516723.1| (e_value=1e-78) PREDICTED: GDSL esterase/lipase At5g08460-like [Glycine max];; (*SWP) sp|Q8L5Z1|GDL17_ARATH (e_value=4e-29) GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1;; (*TAIR) AT4G10950.1 (e_value=5e-72) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc08g082500.1.1 (e_value=9e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62439586-62440675 transcript_region:SL2.40ch08:62439586..62440675- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g33811 (AHRD V1 ***- GDL17_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00058202g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|3|0|253; (*GB) gi|350539793|ref|NP_001234530.1| (e_value=4e-26) WRKY transcription factor [Solanum lycopersicum];; (*SWP) sp|Q9SKD9|WRK46_ARATH (e_value=3e-11) Probable WRKY transcription factor 46 OS=Arabidopsis thaliana GN=WRKY46 PE=2 SV=1;; (*TAIR) AT4G11070.2 (e_value=8e-13) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281;; (*ITAG) Solyc10g009550.2.1 (e_value=1e-68) genomic_reference:SL2.40ch10 gene_region:3672838-3674913 transcript_region:SL2.40ch10:3672838..3674913- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- D3YEX5_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00058202g0001.1 protein AED:0.27 eAED:0.27 QI:41|0.5|0.8|1|0|0.2|5|284|292; (*GB) gi|225454479|ref|XP_002276827.1| (e_value=1e-129) PREDICTED: dihydroflavonol-4-reductase-like [Vitis vinifera];; (*SWP) sp|P14720|DFRA_PETHY (e_value=1e-37) Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2;; (*TAIR) AT4G27250.1 (e_value=2e-42) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13642803-13644425 REVERSE LENGTH=354;; (*ITAG) Solyc10g009540.1.1 (e_value=3e-124) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3669516-3671834 transcript_region:SL2.40ch10:3669516..3671834+ go_terms:GO:0033729 functional_description:"Anthocyanidin reductase (AHRD V1 **** D3YBD5_TRIRP); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00022576g0005.1 protein AED:0.39 eAED:0.40 QI:0|0.25|0.4|0.8|0.75|0.6|5|0|217; (*GB) gi|255545068|ref|XP_002513595.1| (e_value=4e-38) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FK13|PDV1_ARATH (e_value=9e-35) Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1;; (*TAIR) AT5G53280.1 (e_value=7e-36) | Symbols: PDV1 | plastid division1 | chr5:21607586-21609080 FORWARD LENGTH=272;; (*ITAG) Solyc03g007500.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:2072899-2080497 transcript_region:SL2.40ch03:2072899..2080497- functional_description:"Unknown Protein (AHRD V1)"; NbS00045324g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.71|0.85|1|1|7|0|300; (*GB) gi|225435941|ref|XP_002268866.1| (e_value=5e-87) PREDICTED: uncharacterized protein LOC100253016 [Vitis vinifera];; (*SWP) sp|A0JPP1|NC2A_RAT (e_value=1e-28) Dr1-associated corepressor OS=Rattus norvegicus GN=Drap1 PE=2 SV=1;; (*TAIR) AT5G19490.1 (e_value=2e-58) | Symbols: | Histone superfamily protein | chr5:6576769-6578273 REVERSE LENGTH=264;; (*ITAG) Solyc11g072150.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52469132-52473125 transcript_region:SL2.40ch11:52469132..52473125- go_terms:GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 *--- B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00028343g0017.1 protein AED:0.31 eAED:0.31 QI:0|1|0.83|1|0.8|0.83|6|640|279; (*GB) gi|359485140|ref|XP_002279775.2| (e_value=2e-180) PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Vitis vinifera];; (*SWP) sp|Q9XGA1|KPRS4_SPIOL (e_value=8e-179) Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1;; (*TAIR) AT2G42910.1 (e_value=7e-179) | Symbols: | Phosphoribosyltransferase family protein | chr2:17856396-17858394 FORWARD LENGTH=337;; (*ITAG) Solyc07g056330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61527121-61530768 transcript_region:SL2.40ch07:61527121..61530768+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- D7LJE3_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00028343g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|133 NbS00028343g0022.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|0.66|3|160|484; (*GB) gi|359485160|ref|XP_003633222.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: glycerol-3-phosphate acyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q9SHJ5|GPAT1_ARATH (e_value=3e-167) Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1;; (*TAIR) AT1G06520.1 (e_value=2e-168) | Symbols: ATGPAT1, GPAT1 | glycerol-3-phosphate acyltransferase 1 | chr1:1994170-1996067 REVERSE LENGTH=585;; (*ITAG) Solyc07g056320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61490513-61494160 transcript_region:SL2.40ch07:61490513..61494160- go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T753_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00028343g0024.1 protein AED:0.13 eAED:0.13 QI:13|0.84|0.64|1|0.69|0.64|14|0|819; (*GB) gi|359485142|ref|XP_002279792.2| (e_value=0.0) PREDICTED: protein MEI2-like 2-like [Vitis vinifera];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc10g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00028343g0023.1 protein AED:0.15 eAED:0.50 QI:0|0|0|1|0|0|2|0|104; (*ITAG) Solyc09g064150.1.1 (e_value=9e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56827522-56828104 transcript_region:SL2.40ch09:56827522..56828104- go_terms:GO:0003677 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 ***- Q2R194_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00048666g0007.1 protein AED:0.06 eAED:0.06 QI:138|1|0.75|1|0.33|0.75|4|330|204; (*GB) gi|255555005|ref|XP_002518540.1| (e_value=9e-39) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G21215.1 (e_value=8e-19) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11310890-11313421 REVERSE LENGTH=197;; (*ITAG) Solyc02g080110.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:38992536-38995729 transcript_region:SL2.40ch02:38992536..38995729+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048666g0006.1 protein AED:0.01 eAED:0.01 QI:133|1|1|1|1|1|3|602|388; (*GB) gi|225444395|ref|XP_002268248.1| (e_value=0.0) PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|O49562|PDRP1_ARATH (e_value=5e-160) Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic OS=Arabidopsis thaliana GN=RP1 PE=2 SV=1;; (*TAIR) AT4G21210.1 (e_value=4e-161) | Symbols: ATRP1, RP1 | PPDK regulatory protein | chr4:11307002-11308587 FORWARD LENGTH=403;; (*ITAG) Solyc10g005370.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:274406-276387 transcript_region:SL2.40ch10:274406..276387+ go_terms:GO:0004672,GO:0004721 functional_description:"Pyruvate, phosphate dikinase regulatory protein 2 (AHRD V1 ***- PDRP2_ARATH); contains Interpro domain(s) IPR005177 Protein of unknown function DUF299 "; GO:0004672,GO:0004721 NbS00000017g0001.1 protein AED:0.06 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|192 NbS00000017g0011.1 protein AED:0.16 eAED:0.16 QI:0|1|0.8|1|0.5|0.6|5|304|221 NbS00000017g0014.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|0.5|0.66|3|0|237; (*GB) gi|1419090|emb|CAA64422.1| (e_value=3e-149) 37kDa chloroplast inner envelope membrane polypeptide precursor [Nicotiana tabacum];; (*SWP) sp|P23525|IN37_SPIOL (e_value=3e-107) 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G63410.1 (e_value=1e-103) | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:23415816-23417002 REVERSE LENGTH=338;; (*ITAG) Solyc03g005230.2.1 (e_value=2e-132) genomic_reference:SL2.40ch03 gene_region:132905-138964 transcript_region:SL2.40ch03:132905..138964+ go_terms:GO:0051741 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-** A1BDQ8_CHLPD); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0051741 NbS00017912g0014.1 protein AED:0.23 eAED:0.24 QI:274|0.81|0.75|1|0.81|0.83|12|0|470; (*GB) gi|350538263|ref|NP_001234846.1| (e_value=0.0) 3-hydroxy-3-methylglutaryl coenzyme A synthase [Solanum lycopersicum];; (*SWP) sp|P54873|HMCS_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=0.0) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc08g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2294082-2299193 transcript_region:SL2.40ch08:2294082..2299193- go_terms:GO:0004421 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 **** A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal IPR000590 Hydroxymethylglutaryl-coenzyme A synthase, active site "; GO:0004421 NbS00017912g0006.1 protein AED:0.23 eAED:0.24 QI:417|0.5|0.8|1|0|0.4|5|364|179; (*GB) gi|224074751|ref|XP_002304451.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g007710.2.1 (e_value=3e-75) genomic_reference:SL2.40ch08 gene_region:2193212-2194527 transcript_region:SL2.40ch08:2193212..2194527- functional_description:"Unknown Protein (AHRD V1)"; NbS00017912g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|414; (*GB) gi|124358348|gb|ABG37022.1| (e_value=0.0) serine protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-84) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=2e-92) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc08g007600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2143750-2145981 transcript_region:SL2.40ch08:2143750..2145981- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017912g0015.1 protein AED:0.39 eAED:0.39 QI:471|0.5|1|1|0|0|3|65|40 NbS00017912g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|3413481|emb|CAA07250.1| (e_value=3e-67) serine protease [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-24) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=4e-25) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007670.1.1 (e_value=4e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2169906-2172140 transcript_region:SL2.40ch08:2169906..2172140+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017912g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|611; (*GB) gi|124358348|gb|ABG37022.1| (e_value=0.0) serine protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-177) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=2e-178) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2183538-2185754 transcript_region:SL2.40ch08:2183538..2185754+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017912g0022.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.33|3|0|254; (*GB) gi|255537221|ref|XP_002509677.1| (e_value=7e-137) Alpha-expansin 7 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LN94|EXPA7_ARATH (e_value=1e-113) Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1;; (*TAIR) AT1G12560.1 (e_value=9e-115) | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26, EXPA7 | expansin A7 | chr1:4276557-4277693 FORWARD LENGTH=262;; (*ITAG) Solyc08g080060.2.1 (e_value=8e-143) genomic_reference:SL2.40ch08 gene_region:60562889-60564536 transcript_region:SL2.40ch08:60562889..60564536+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00017912g0023.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.7|1|0.77|0.7|10|149|313; (*GB) gi|118487360|gb|ABK95508.1| (e_value=3e-116) unknown [Populus trichocarpa];; (*SWP) sp|Q8GYC7|PGL1B_ARATH (e_value=1e-105) PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1;; (*TAIR) AT4G11960.1 (e_value=1e-106) | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177709 REVERSE LENGTH=313;; (*ITAG) Solyc08g007770.2.1 (e_value=4e-145) genomic_reference:SL2.40ch08 gene_region:2287091-2290348 transcript_region:SL2.40ch08:2287091..2290348+ functional_description:"PGR5-like protein 1A, chloroplastic (AHRD V1 ***- PGL1A_ARATH)"; NbS00011439g0013.1 protein AED:0.06 eAED:0.06 QI:95|1|1|1|0.75|0.6|5|463|112; (*GB) gi|209967441|gb|ACJ02349.1| (e_value=8e-70) 60S ribosomal protein L35a [Vernicia fordii];; (*SWP) sp|Q9C912|R35A3_ARATH (e_value=2e-70) 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1;; (*TAIR) AT1G74270.1 (e_value=2e-71) | Symbols: | Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112;; (*ITAG) Solyc05g052800.2.1 (e_value=1e-67) genomic_reference:SL2.40ch05 gene_region:62130017-62132095 transcript_region:SL2.40ch05:62130017..62132095- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35a (AHRD V1 ***- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae "; GO:0003735 NbS00011439g0016.1 protein AED:0.40 eAED:0.42 QI:72|0.3|0.18|1|0.3|0.54|11|0|375; (*GB) gi|350536507|ref|NP_001233994.1| (e_value=7e-110) proline transporter 3 [Solanum lycopersicum];; (*TAIR) AT2G39890.2 (e_value=7e-83) | Symbols: PROT1, ATPROT1 | proline transporter 1 | chr2:16656022-16658202 FORWARD LENGTH=442;; (*ITAG) Solyc05g052820.2.1 (e_value=3e-113) genomic_reference:SL2.40ch05 gene_region:62136002-62140261 transcript_region:SL2.40ch05:62136002..62140261- go_terms:GO:0015193 functional_description:"Amino acid permease-like protein proline transporter-like protein (AHRD V1 **** Q9FJ34_ARATH); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00011439g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.75|1|1|1|4|24|288; (*GB) gi|350536429|ref|NP_001233990.1| (e_value=2e-113) proline transporter 2 [Solanum lycopersicum];; (*TAIR) AT3G55740.2 (e_value=6e-104) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20696573-20698157 FORWARD LENGTH=383;; (*ITAG) Solyc05g052830.2.1 (e_value=9e-125) genomic_reference:SL2.40ch05 gene_region:62143139-62149192 transcript_region:SL2.40ch05:62143139..62149192- go_terms:GO:0015193 functional_description:"Proline transporter 2 (AHRD V1 **** Q9XE49_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00011439g0014.1 protein AED:0.43 eAED:0.53 QI:0|0.33|0|1|0|0|4|0|175; (*GB) gi|113205400|gb|AAU90303.2| (e_value=3e-14) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc03g093100.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00011439g0015.1 protein AED:0.45 eAED:0.48 QI:0|0|0|1|0|0|3|0|197; (*GB) gi|54261828|gb|AAV31178.1| (e_value=7e-15) Putative transposase, identical [Solanum tuberosum]; NbS00027130g0008.1 protein AED:0.06 eAED:0.06 QI:150|1|1|1|0.66|0.57|7|163|256; (*GB) gi|350540662|ref|NP_001233847.1| (e_value=4e-148) carbonic anhydrase [Solanum lycopersicum];; (*SWP) sp|P27141|CAHC_TOBAC (e_value=3e-131) Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G01500.1 (e_value=1e-120) | Symbols: CA1, ATBCA1, SABP3, ATSABP3 | carbonic anhydrase 1 | chr3:194853-196716 REVERSE LENGTH=270;; (*ITAG) Solyc02g067750.2.1 (e_value=7e-151) genomic_reference:SL2.40ch02 gene_region:32439990-32442359 transcript_region:SL2.40ch02:32439990..32442359- go_terms:GO:0005515,GO:0004089 functional_description:"Carbonic anhydrase (AHRD V1 ***- B1VK36_SOLLC); contains Interpro domain(s) IPR001765 Carbonic anhydrase "; GO:0005515,GO:0004089 NbS00021931g0001.1 protein AED:0.08 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|255567451|ref|XP_002524705.1| (e_value=1e-124) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT4G05150.1 (e_value=9e-88) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr4:2660339-2662675 FORWARD LENGTH=477;; (*ITAG) Solyc02g079360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38533196-38534353 transcript_region:SL2.40ch02:38533196..38534353+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00021931g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|101; (*GB) gi|225423704|ref|XP_002277425.1| (e_value=2e-37) PREDICTED: 60S ribosomal protein L27-3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LCL3|RL272_ARATH (e_value=3e-35) 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2;; (*TAIR) AT3G22230.1 (e_value=2e-36) | Symbols: | Ribosomal L27e protein family | chr3:7844136-7844543 REVERSE LENGTH=135;; (*ITAG) Solyc06g073300.1.1 (e_value=1e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41549960-41550367 transcript_region:SL2.40ch06:41549960..41550367- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "; GO:0003735 NbS00035018g0003.1 protein AED:0.06 eAED:0.06 QI:172|1|1|1|0.5|1|3|372|709; (*GB) gi|224101995|ref|XP_002312505.1| (e_value=1e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUM0|C3H17_ARATH (e_value=3e-92) Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1;; (*TAIR) AT2G02160.1 (e_value=3e-93) | Symbols: | CCCH-type zinc finger family protein | chr2:553407-555899 REVERSE LENGTH=669;; (*ITAG) Solyc04g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2166940-2170876 transcript_region:SL2.40ch04:2166940..2170876- go_terms:GO:0008152,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 17 (AHRD V1 ***- C3H17_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008152,GO:0008270 NbS00015644g0023.1 protein AED:0.40 eAED:0.40 QI:24|0.75|0.8|1|0.5|0.4|5|0|144; (*GB) gi|351724257|ref|NP_001238587.1| (e_value=8e-74) uncharacterized protein LOC100527093 [Glycine max];; (*SWP) sp|Q5RES6|TPPC2_PONAB (e_value=1e-32) Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1;; (*TAIR) AT1G80500.1 (e_value=2e-75) | Symbols: | SNARE-like superfamily protein | chr1:30271195-30272431 FORWARD LENGTH=135;; (*ITAG) Solyc06g068030.2.1 (e_value=4e-77) genomic_reference:SL2.40ch06 gene_region:38551841-38555343 transcript_region:SL2.40ch06:38551841..38555343- go_terms:GO:0008134,GO:0017112 functional_description:"Trafficking protein particle complex subunit 2 (AHRD V1 ***- B0XGN5_CULQU); contains Interpro domain(s) IPR006722 Sedlin "; GO:0008134,GO:0017112 NbS00015644g0025.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|0.33|3|40|829; (*GB) gi|3914361|sp|P93400.2|PLDA1_TOBAC (e_value=0.0) RecName: Full=Phospholipase D alpha 1; Short=PLD alpha 1; AltName: Full=Choline phosphatase 1; AltName: Full=Phosphatidylcholine-hydrolyzing phospholipase D 1;; (*SWP) sp|P93400|PLDA1_TOBAC (e_value=0.0) Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2;; (*TAIR) AT1G52570.1 (e_value=0.0) | Symbols: PLDALPHA2 | phospholipase D alpha 2 | chr1:19583940-19586551 REVERSE LENGTH=810;; (*ITAG) Solyc06g068090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38587487-38591993 transcript_region:SL2.40ch06:38587487..38591993+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00015644g0026.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.87|1|0.42|0.37|8|360|444; (*GB) gi|350536629|ref|NP_001234256.1| (e_value=0.0) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=9e-155) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT1G80170.1 (e_value=7e-156) | Symbols: | Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444;; (*ITAG) Solyc06g068040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38555824-38558971 transcript_region:SL2.40ch06:38555824..38558971+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00015644g0022.1 protein AED:0.29 eAED:0.29 QI:271|0.85|0.87|1|0.71|0.75|8|186|247; (*GB) gi|225442857|ref|XP_002285378.1| (e_value=6e-68) PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase [Vitis vinifera];; (*TAIR) AT3G15690.2 (e_value=5e-55) | Symbols: | Single hybrid motif superfamily protein | chr3:5317108-5319435 FORWARD LENGTH=263;; (*ITAG) Solyc06g068010.2.1 (e_value=8e-133) genomic_reference:SL2.40ch06 gene_region:38545387-38550453 transcript_region:SL2.40ch06:38545387..38550453+ go_terms:GO:0005488 functional_description:"Biotin carboxyl carrier protein of acetyl-CoA carboxylase (AHRD V1 *-*- C6NTC5_9GAMM); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005488 NbS00015644g0006.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|73 NbS00015644g0024.1 protein AED:0.31 eAED:0.49 QI:0|0|0|1|1|1|2|0|95; (*ITAG) Solyc03g116630.2.1 (e_value=4e-15) genomic_reference:SL2.40ch03 gene_region:60018861-60019985 transcript_region:SL2.40ch03:60018861..60019985+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010296g0001.1 protein AED:0.13 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|191; (*GB) gi|297789647|ref|XP_002862767.1| (e_value=5e-56) hypothetical protein ARALYDRAFT_333222 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G35810.1 (e_value=3e-44) | Symbols: | Ankyrin repeat family protein | chr5:13993428-13994549 REVERSE LENGTH=347;; (*ITAG) Solyc02g068600.2.1 (e_value=7e-87) genomic_reference:SL2.40ch02 gene_region:33142873-33144717 transcript_region:SL2.40ch02:33142873..33144717- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 **-- Q9FMD0_ARATH)"; GO:0005515 NbS00026241g0004.1 protein AED:0.42 eAED:0.46 QI:0|0.81|0.5|1|0.63|0.75|12|0|382; (*GB) gi|255541314|ref|XP_002511721.1| (e_value=1e-73) glutathione-s-transferase theta, gst, putative [Ricinus communis];; (*SWP) sp|P57108|GSTZ_EUPES (e_value=2e-60) Glutathione S-transferase zeta class OS=Euphorbia esula PE=2 SV=1;; (*TAIR) AT2G02390.2 (e_value=9e-55) | Symbols: ATGSTZ1, GST18, GSTZ1 | glutathione S-transferase zeta 1 | chr2:629015-630607 FORWARD LENGTH=191;; (*ITAG) Solyc01g091330.2.1 (e_value=7e-113) genomic_reference:SL2.40ch01 gene_region:76737024-76743229 transcript_region:SL2.40ch01:76737024..76743229- go_terms:GO:0005737 functional_description:"Maleylacetoacetate isomerase/glutathione S-transferase (AHRD V1 ***- C9Q4X6_9VIBR); contains Interpro domain(s) IPR005955 Maleylacetoacetate isomerase "; GO:0005737 NbS00060302g0002.1 protein AED:0.00 eAED:0.00 QI:313|-1|0|1|-1|1|1|0|90; (*GB) gi|193290694|gb|ACF17655.1| (e_value=1e-42) putative ferredoxin-dependent glutamate synthase 1 [Capsicum annuum];; (*ITAG) Solyc03g063560.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:32287538-32328106 transcript_region:SL2.40ch03:32287538..32328106- go_terms:GO:0005515 functional_description:"Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C "; GO:0005515 NbS00007242g0003.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|356512738|ref|XP_003525073.1| (e_value=5e-69) PREDICTED: uncharacterized protein LOC100805080 [Glycine max];; (*TAIR) AT5G10010.1 (e_value=5e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). | chr5:3128098-3131452 FORWARD LENGTH=434;; (*ITAG) Solyc04g054180.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:51030426-51037336 transcript_region:SL2.40ch04:51030426..51037336- functional_description:"Os02g0519300 protein (Fragment) (AHRD V1 *-*- C7IY37_ORYSJ)"; NbS00007242g0008.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.93|1|16|352|565; (*GB) gi|297744550|emb|CBI37812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=8e-81) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G38470.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc10g055720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52722218-52731615 transcript_region:SL2.40ch10:52722218..52731615- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00008426g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|1|1|1|4|0|478; (*GB) gi|85068616|gb|ABC69388.1| (e_value=0.0) CYP92B2v2 [Nicotiana tabacum];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=3e-110) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=2e-111) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc11g030730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:19662451-19664018 transcript_region:SL2.40ch11:19662451..19664018- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00008426g0010.1 protein AED:0.14 eAED:0.14 QI:338|0.5|0.66|1|1|1|3|0|367; (*GB) gi|225460185|ref|XP_002279455.1| (e_value=9e-145) PREDICTED: uncharacterized protein LOC100260279 [Vitis vinifera];; (*SWP) sp|Q3AQ69|Y1601_CHLCH (e_value=6e-20) UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1601 PE=3 SV=1;; (*TAIR) AT1G33780.1 (e_value=2e-116) | Symbols: | Protein of unknown function (DUF179) | chr1:12244799-12246034 REVERSE LENGTH=325;; (*ITAG) Solyc11g030710.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:19640087-19648210 transcript_region:SL2.40ch11:19640087..19648210+ functional_description:"Homology to unknown gene (AHRD V1 **-- Q00XE1_OSTTA); contains Interpro domain(s) IPR003774 Protein of unknown function DUF179 "; NbS00008426g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.5|1|0.6|0.66|6|0|366; (*GB) gi|6692816|dbj|BAA89423.1| (e_value=8e-152) allyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q39173|P2_ARATH (e_value=4e-144) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT5G16990.1 (e_value=3e-145) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343;; (*ITAG) Solyc11g030720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:19656366-19661819 transcript_region:SL2.40ch11:19656366..19661819+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* D6H3R6_STAAU); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00055347g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|229; (*GB) gi|40949663|gb|AAR97545.1| (e_value=8e-78) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=5e-75) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=1e-69) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102400.2.1 (e_value=2e-77) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00039771g0003.1 protein AED:0.30 eAED:0.30 QI:55|0|0.5|0.5|1|1|2|0|200 NbS00061582g0003.1 protein AED:0.19 eAED:0.19 QI:184|1|1|1|0.5|0.66|3|316|332; (*GB) gi|350534426|ref|NP_001234652.1| (e_value=3e-140) NAC domain protein [Solanum lycopersicum];; (*SWP) sp|Q9ZNU2|NAC18_ARATH (e_value=7e-83) NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1;; (*TAIR) AT3G15510.1 (e_value=9e-109) | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain containing protein 2 | chr3:5243696-5245037 FORWARD LENGTH=364;; (*ITAG) Solyc10g006880.2.1 (e_value=7e-143) genomic_reference:SL2.40ch10 gene_region:1305620-1308510 transcript_region:SL2.40ch10:1305620..1308510- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein (AHRD V1 ***- Q56UP7_SOLLC); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00023932g0011.1 protein AED:0.35 eAED:0.36 QI:0|0.4|0.16|0.83|0.6|0.5|6|0|529; (*GB) gi|359489301|ref|XP_002270627.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266721 [Vitis vinifera];; (*TAIR) AT2G44760.1 (e_value=6e-164) | Symbols: | Domain of unknown function (DUF3598) | chr2:18452937-18454785 REVERSE LENGTH=500;; (*ITAG) Solyc10g037900.1.1 (e_value=3e-137) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:17841063-17843943 transcript_region:SL2.40ch10:17841063..17843943- functional_description:"Unknown Protein (AHRD V1)"; NbS00023932g0015.1 protein AED:0.51 eAED:0.57 QI:0|0.57|0.5|0.87|1|1|8|0|242; (*GB) gi|147811501|emb|CAN74275.1| (e_value=5e-133) hypothetical protein VITISV_036799 [Vitis vinifera];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=5e-21) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G60260.4 (e_value=6e-123) | Symbols: | ELMO/CED-12 family protein | chr3:22274303-22276839 FORWARD LENGTH=266;; (*ITAG) Solyc01g089980.2.1 (e_value=4e-135) genomic_reference:SL2.40ch01 gene_region:75451177-75457993 transcript_region:SL2.40ch01:75451177..75457993- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein (AHRD V1 ***- Q16Y60_AEDAE); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00026139g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.8|1|1|1|5|0|301; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=9e-114) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=2e-98) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=1e-99) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc01g106940.2.1 (e_value=4e-136) genomic_reference:SL2.40ch01 gene_region:86382163-86399044 transcript_region:SL2.40ch01:86382163..86399044+ go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone 4 (Fragment) (AHRD V1 *--- A6MZD9_ORYSI); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00026139g0006.1 protein AED:0.27 eAED:0.27 QI:282|0.88|0.89|0.94|0.83|0.89|19|479|657; (*GB) gi|296083035|emb|CBI22439.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G14680.3 (e_value=1e-163) | Symbols: MEE13 | myosin heavy chain-related | chr2:6278256-6283766 FORWARD LENGTH=629;; (*ITAG) Solyc01g106950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86400110-86411982 transcript_region:SL2.40ch01:86400110..86411982+ functional_description:"Os03g0431932 protein (Fragment) (AHRD V1 *-*- C7J0D6_ORYSJ)"; NbS00023384g0001.1 protein AED:0.44 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|147783080|emb|CAN64249.1| (e_value=3e-23) hypothetical protein VITISV_032977 [Vitis vinifera];; (*TAIR) AT3G63095.1 (e_value=2e-21) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:23315506-23316258 FORWARD LENGTH=250;; (*ITAG) Solyc09g064900.1.1 (e_value=9e-38) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:57994509-57994976 transcript_region:SL2.40ch09:57994509..57994976+ functional_description:"AAA ATPase containing von Willebrand factor type A (AHRD V1 *--- B6THL9_MAIZE)"; NbS00023384g0002.1 protein AED:0.84 eAED:0.84 QI:0|0|0.5|0.5|1|1|2|0|287; (*GB) gi|357440801|ref|XP_003590678.1| (e_value=3e-117) hypothetical protein MTR_1g072550 [Medicago truncatula];; (*TAIR) AT3G63090.1 (e_value=2e-108) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr3:23313617-23314831 FORWARD LENGTH=404;; (*ITAG) Solyc04g071290.2.1 (e_value=6e-40) genomic_reference:SL2.40ch04 gene_region:55811077-55818764 transcript_region:SL2.40ch04:55811077..55818764+ go_terms:GO:0016020,GO:0005622 functional_description:"Mitochondrial substrate carrier (Fragment) (AHRD V1 *-*- B3VXY3_POPTN); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0016020,GO:0005622 NbS00006743g0003.1 protein AED:0.11 eAED:0.11 QI:301|1|1|1|1|1|6|448|298; (*GB) gi|15228783|ref|NP_191155.1| (e_value=2e-114) haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=3e-20) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1;; (*TAIR) AT3G55960.1 (e_value=4e-117) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:20760797-20762892 REVERSE LENGTH=305;; (*ITAG) Solyc05g052580.2.1 (e_value=8e-156) genomic_reference:SL2.40ch05 gene_region:61938525-61944476 transcript_region:SL2.40ch05:61938525..61944476+ go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00020506g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|207; (*GB) gi|389986095|gb|AFL46165.1| (e_value=2e-141) jasmonate ZIM domain protein a [Nicotiana attenuata];; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=7e-46) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1;; (*TAIR) AT1G19180.1 (e_value=5e-47) | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253;; (*ITAG) Solyc07g042170.2.1 (e_value=2e-92) genomic_reference:SL2.40ch07 gene_region:52508186-52509386 transcript_region:SL2.40ch07:52508186..52509386+ go_terms:GO:0005515 functional_description:"Jasmonate ZIM-domain protein 3 (AHRD V1 **-- B3Y563_TOBAC); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00025644g0001.1 protein AED:0.14 eAED:0.27 QI:0|0|0|1|1|1|3|0|1246; (*GB) gi|225440262|ref|XP_002284022.1| (e_value=0.0) PREDICTED: splicing factor 3B subunit 1-like [Vitis vinifera];; (*SWP) sp|O57683|SF3B1_XENLA (e_value=0.0) Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1;; (*TAIR) AT5G64270.1 (e_value=0.0) | Symbols: | splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269;; (*ITAG) Solyc10g081070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61569038-61571150 transcript_region:SL2.40ch10:61569038..61571150+ go_terms:GO:0005488 functional_description:"Splicing factor 3B subunit 1 (AHRD V1 **-- D0N488_PHYIN); contains Interpro domain(s) IPR015016 Splicing factor 3B subunit 1 "; GO:0005488 NbS00008054g0018.1 protein AED:0.12 eAED:0.12 QI:895|1|1|1|0.4|0.33|6|864|253; (*GB) gi|224094801|ref|XP_002310241.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7G1|PUB45_ARATH (e_value=2e-31) U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1;; (*TAIR) AT1G27910.1 (e_value=1e-32) | Symbols: PUB45, ATPUB45 | plant U-box 45 | chr1:9720962-9723975 REVERSE LENGTH=768;; (*ITAG) Solyc03g034020.2.1 (e_value=5e-97) genomic_reference:SL2.40ch03 gene_region:10005339-10009833 transcript_region:SL2.40ch03:10005339..10009833- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein 5 (AHRD V1 ***- D7MBG7_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005515,GO:0004842 NbS00008054g0015.1 protein AED:0.16 eAED:0.16 QI:164|0.8|0.83|1|0.2|0.33|6|284|310; (*GB) gi|224105381|ref|XP_002313791.1| (e_value=6e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VJ4|BEE2_ARATH (e_value=2e-27) Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1;; (*TAIR) AT4G36540.1 (e_value=1e-28) | Symbols: BEE2 | BR enhanced expression 2 | chr4:17243699-17244965 FORWARD LENGTH=304;; (*ITAG) Solyc03g034000.2.1 (e_value=4e-83) genomic_reference:SL2.40ch03 gene_region:9980395-9983110 transcript_region:SL2.40ch03:9980395..9983110- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00008054g0014.1 protein AED:0.36 eAED:0.82 QI:0|0|0|1|1|0|2|0|114 NbS00008054g0016.1 protein AED:0.20 eAED:0.20 QI:874|0.4|0.33|1|0.2|0.16|6|0|439; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=9e-161) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=9e-158) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc04g071750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56305032-56307353 transcript_region:SL2.40ch04:56305032..56307353+ go_terms:GO:0051015 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0051015 NbS00008054g0101.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|82 NbS00036429g0004.1 protein AED:0.40 eAED:0.41 QI:78|0.66|0.5|1|0.66|0.75|4|0|183; (*GB) gi|224087407|ref|XP_002308154.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LCY2|ISAM2_ARATH (e_value=1e-48) Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2;; (*TAIR) AT5G03905.1 (e_value=1e-49) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1052728-1054041 FORWARD LENGTH=158;; (*ITAG) Solyc01g100410.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:82205026-82210979 transcript_region:SL2.40ch01:82205026..82210979+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein ErpA (AHRD V1 ***- C8Q1G7_9GAMM); contains Interpro domain(s) IPR016092 FeS cluster insertion "; GO:0016226 NbS00032161g0008.1 protein AED:0.23 eAED:0.25 QI:0|0.5|0|0.66|1|0.66|3|0|655; (*GB) gi|359485882|ref|XP_002270802.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Vitis vinifera];; (*SWP) sp|Q9LUB9|Y5813_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130 PE=2 SV=1;; (*TAIR) AT5G48130.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19516291-19518450 FORWARD LENGTH=625;; (*ITAG) Solyc07g048000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56527164-56530194 transcript_region:SL2.40ch07:56527164..56530194+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 (AHRD V1 **-- D9ZHC8_HYPPE); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00032161g0009.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|0|2|0|70 NbS00032161g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|0.5|0.8|5|1262|269; (*GB) gi|225452175|ref|XP_002264926.1| (e_value=4e-110) PREDICTED: thymidylate kinase [Vitis vinifera];; (*SWP) sp|P23919|KTHY_HUMAN (e_value=2e-54) Thymidylate kinase OS=Homo sapiens GN=DTYMK PE=1 SV=4;; (*TAIR) AT5G59440.3 (e_value=2e-98) | Symbols: ZEU1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23971397-23972729 FORWARD LENGTH=271;; (*ITAG) Solyc07g048010.2.1 (e_value=3e-163) genomic_reference:SL2.40ch07 gene_region:56531812-56536127 transcript_region:SL2.40ch07:56531812..56536127- go_terms:GO:0004798 functional_description:"Thymidylate kinase family protein (AHRD V1 **** D7MSE9_ARALY); contains Interpro domain(s) IPR000062 Thymidylate kinase-like "; GO:0004798 NbS00016041g0028.1 protein AED:0.20 eAED:0.22 QI:402|0.8|0.72|1|0.7|0.72|11|344|440; (*GB) gi|115466772|ref|NP_001056985.1| (e_value=7e-142) Os06g0182500 [Oryza sativa Japonica Group];; (*SWP) sp|P0C7Q8|DA1_ARATH (e_value=9e-114) Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1;; (*TAIR) AT1G19270.1 (e_value=7e-115) | Symbols: DA1 | DA1 | chr1:6663327-6665845 FORWARD LENGTH=532;; (*ITAG) Solyc04g079840.2.1 (e_value=6e-141) genomic_reference:SL2.40ch04 gene_region:61750755-61758176 transcript_region:SL2.40ch04:61750755..61758176+ go_terms:GO:0043130 functional_description:"LIM domain-binding protein (AHRD V1 *--* B0WXP3_CULQU); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0043130 NbS00016041g0040.1 protein AED:0.27 eAED:0.28 QI:0|0.76|0.71|1|0.23|0.21|14|1369|220; (*GB) gi|356515204|ref|XP_003526291.1| (e_value=3e-22) PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Glycine max];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=5e-20) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=3e-21) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc02g078780.2.1 (e_value=2e-66) genomic_reference:SL2.40ch02 gene_region:37998577-38004947 transcript_region:SL2.40ch02:37998577..38004947+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00016041g0027.1 protein AED:0.39 eAED:0.39 QI:0|0|0.33|0.66|0.5|0.33|3|0|127; (*ITAG) Solyc00g164580.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17840292-17841447 transcript_region:SL2.40ch00:17840292..17841447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016041g0041.1 protein AED:0.11 eAED:0.14 QI:0|0|0|0.8|0|0.4|5|0|482; (*GB) gi|315000154|emb|CAE46646.2| (e_value=2e-176) cytochrome oxidase, subunit I [Solanum commersonii x Solanum tuberosum];; (*SWP) sp|P60621|COX1_RAPSA (e_value=1e-168) Cytochrome c oxidase subunit 1 OS=Raphanus sativus GN=COX1 PE=3 SV=1;; (*ITAG) ATMG01360.1 (e_value=9e-170) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=1e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00016041g0010.1 protein AED:0.17 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|259563723|gb|ACW83060.1| (e_value=4e-105) glycosyltransferase family GT8 protein [Populus deltoides];; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=3e-84) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=2e-85) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc04g079860.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61775917-61776948 transcript_region:SL2.40ch04:61775917..61776948- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00016041g0021.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|69; (*GB) gi|255538542|ref|XP_002510336.1| (e_value=8e-30) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=6e-31) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=5e-32) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc02g065530.2.1 (e_value=4e-32) genomic_reference:SL2.40ch02 gene_region:31269461-31270781 transcript_region:SL2.40ch02:31269461..31270781- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00016041g0025.1 protein AED:0.48 eAED:0.79 QI:0|0|0|1|1|1|2|0|190; (*GB) gi|386799236|ref|YP_006291807.1| (e_value=3e-17) ccmFN gene product (mitochondrion) [Daucus carota subsp. sativus];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=1e-18) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=8e-19) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00016041g0037.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|846; (*GB) gi|359492658|ref|XP_002281859.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like [Vitis vinifera];; (*SWP) sp|Q9LN69|PPR50_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2;; (*TAIR) AT1G19290.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6666249-6668963 FORWARD LENGTH=904;; (*ITAG) Solyc04g079850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61758875-61762601 transcript_region:SL2.40ch04:61758875..61762601+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHC1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016041g0034.1 protein AED:0.15 eAED:0.45 QI:74|0|0|1|0|0|5|0|197; (*GB) gi|57013902|ref|YP_173350.1| (e_value=5e-43) NADH dehydrogenase subunit 2 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-34) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=5e-40) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g061540.1.1 (e_value=6e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:27743296-27743634 transcript_region:SL2.40ch03:27743296..27743634+ functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00016041g0035.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|0|0|2|0|135; (*GB) gi|57013919|ref|YP_173392.1| (e_value=3e-66) hypothetical protein NitaMp046 [Nicotiana tabacum]; NbS00021094g0003.1 protein AED:0.16 eAED:0.16 QI:153|1|1|1|1|1|9|481|892; (*GB) gi|359497505|ref|XP_003635544.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854548 [Vitis vinifera];; (*TAIR) AT4G27430.2 (e_value=2e-126) | Symbols: CIP7 | COP1-interacting protein 7 | chr4:13718817-13722736 FORWARD LENGTH=1058;; (*ITAG) Solyc02g078670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37908574-37913624 transcript_region:SL2.40ch02:37908574..37913624- go_terms:GO:0016563 functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *-*- Q7GDB1_ARATH)"; GO:0016563 NbS00003051g0009.1 protein AED:0.18 eAED:0.18 QI:526|1|0.75|1|0.33|0.25|4|0|533; (*GB) gi|225465698|ref|XP_002273428.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263135 [Vitis vinifera];; (*SWP) sp|D3YYI7|RN217_MOUSE (e_value=2e-13) Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus GN=Rnf217 PE=3 SV=2;; (*TAIR) AT4G19670.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:10699383-10701342 REVERSE LENGTH=532;; (*ITAG) Solyc02g069230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33753086-33758868 transcript_region:SL2.40ch02:33753086..33758868+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00003051g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|436; (*GB) gi|225465700|ref|XP_002273827.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252719 [Vitis vinifera];; (*TAIR) AT3G05320.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445;; (*ITAG) Solyc02g069240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33760563-33761873 transcript_region:SL2.40ch02:33760563..33761873- functional_description:"Protein-O-fucosyltransferase 1 (AHRD V1 ***- Q659R8_ORYSA)"; NbS00008143g0006.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.33|1|0|0|3|0|172; (*GB) gi|296081240|emb|CBI17984.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=4e-51) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=5e-52) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc07g053120.2.1 (e_value=9e-64) genomic_reference:SL2.40ch07 gene_region:58892560-58896857 transcript_region:SL2.40ch07:58892560..58896857- go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00008143g0007.1 protein AED:0.69 eAED:0.73 QI:1|0|0|0.5|0|0|4|0|326; (*GB) gi|1389893|gb|AAB02945.1| (e_value=3e-59) squalene synthase [Nicotiana tabacum];; (*SWP) sp|P53800|FDFT_NICBE (e_value=8e-59) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=4e-49) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc01g110290.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:88779362-88786983 transcript_region:SL2.40ch01:88779362..88786983+ go_terms:GO:0005515,GO:0004310 functional_description:"Squalene synthase (AHRD V1 ***- D0VFU8_SOLLC); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0005515,GO:0004310 NbS00008143g0008.1 protein AED:0.34 eAED:0.51 QI:0|0|0|1|0|0|5|0|252; (*GB) gi|359485739|ref|XP_002262617.2| (e_value=1e-40) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Vitis vinifera];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=7e-36) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=6e-37) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc02g078750.2.1 (e_value=2e-60) genomic_reference:SL2.40ch02 gene_region:37972957-37977532 transcript_region:SL2.40ch02:37972957..37977532+ go_terms:GO:0004672 functional_description:"Receptor protein kinase (AHRD V1 **** Q40096_IPOTF); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00056746g0011.1 protein AED:0.10 eAED:0.13 QI:0|0|0|0.83|0.2|0.16|6|0|896; (*GB) gi|224114660|ref|XP_002332335.1| (e_value=7e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=8e-14) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT5G51160.1 (e_value=6e-59) | Symbols: | Ankyrin repeat family protein | chr5:20792280-20793681 FORWARD LENGTH=442;; (*ITAG) Solyc01g088830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75314919-75316502 transcript_region:SL2.40ch01:75314919..75316502+ go_terms:GO:0030506 functional_description:"Ankyrin repeat protein (AHRD V1 **** B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00056746g0012.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0|0|2|0|327; (*GB) gi|224137110|ref|XP_002327024.1| (e_value=9e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT2G44730.1 (e_value=2e-50) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr2:18437447-18438565 REVERSE LENGTH=372;; (*ITAG) Solyc01g088820.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:75309408-75310668 transcript_region:SL2.40ch01:75309408..75310668+ functional_description:"Transcription factor (AHRD V1 **-- D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00022422g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|351; (*GB) gi|225438019|ref|XP_002274734.1| (e_value=2e-64) PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=1e-36) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT5G55550.4 (e_value=4e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22502077-22503658 REVERSE LENGTH=448;; (*ITAG) Solyc09g072790.2.1 (e_value=2e-146) genomic_reference:SL2.40ch09 gene_region:60987196-60990149 transcript_region:SL2.40ch09:60987196..60990149- go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00022422g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|0|581; (*GB) gi|255571236|ref|XP_002526568.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9FNL7|PTR3_ARATH (e_value=0.0) Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1;; (*TAIR) AT5G46050.1 (e_value=0.0) | Symbols: ATPTR3, PTR3 | peptide transporter 3 | chr5:18675062-18679071 REVERSE LENGTH=582;; (*ITAG) Solyc09g072780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60970924-60974861 transcript_region:SL2.40ch09:60970924..60974861- go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00022422g0019.1 protein AED:0.18 eAED:0.18 QI:888|1|1|1|0.42|0.25|8|143|408; (*GB) gi|224132308|ref|XP_002321307.1| (e_value=2e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10385.1 (e_value=1e-20) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc09g072720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60831847-60835782 transcript_region:SL2.40ch09:60831847..60835782+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN86_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00022422g0017.1 protein AED:0.25 eAED:0.30 QI:0|0.75|0.33|1|0.75|0.66|9|0|500; (*GB) gi|255571240|ref|XP_002526570.1| (e_value=2e-133) brca1 associated ring domain, putative [Ricinus communis];; (*SWP) sp|Q8RXD4|BRCA1_ARATH (e_value=6e-78) Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1;; (*TAIR) AT1G04020.2 (e_value=1e-118) | Symbols: ATBARD1, BARD1 | breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=713;; (*ITAG) Solyc05g016230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15163373-15172656 transcript_region:SL2.40ch05:15163373..15172656+ go_terms:GO:0003713,GO:0003677 functional_description:"Breast cancer type 1 susceptibility protein homolog (Fragment) (AHRD V1 *--- A5A751_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713,GO:0003677 NbS00008848g0015.1 protein AED:0.03 eAED:0.03 QI:105|1|1|1|1|1|2|19|174; (*GB) gi|259453|gb|AAB24078.1| (e_value=3e-52) lipid body membrane protein [Daucus carota];; (*SWP) sp|Q9SS98|OLEO5_ARATH (e_value=2e-44) Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1;; (*TAIR) AT3G01570.1 (e_value=2e-45) | Symbols: | Oleosin family protein | chr3:222152-222778 REVERSE LENGTH=183;; (*ITAG) Solyc02g086490.2.1 (e_value=2e-61) genomic_reference:SL2.40ch02 gene_region:43743121-43743933 transcript_region:SL2.40ch02:43743121..43743933+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q43123_DAUCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00008848g0006.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|173; (*GB) gi|255560892|ref|XP_002521459.1| (e_value=9e-63) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q8L8Q3|LBD25_ARATH (e_value=2e-58) LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3;; (*TAIR) AT3G27650.1 (e_value=1e-59) | Symbols: LBD25 | LOB domain-containing protein 25 | chr3:10238731-10240346 FORWARD LENGTH=159;; (*ITAG) Solyc02g067800.2.1 (e_value=3e-66) genomic_reference:SL2.40ch02 gene_region:32489780-32491755 transcript_region:SL2.40ch02:32489780..32491755+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- B2KKZ3_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00008848g0016.1 protein AED:0.20 eAED:0.21 QI:0|0.7|0.71|1|0.8|0.80|21|344|1436; (*GB) gi|255560886|ref|XP_002521456.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G27670.1 (e_value=0.0) | Symbols: RST1 | ARM repeat superfamily protein | chr3:10245338-10253158 FORWARD LENGTH=1841;; (*ITAG) Solyc02g086500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43746420-43759951 transcript_region:SL2.40ch02:43746420..43759951+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGF10 (AHRD V1 **-- Q9LVX3_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00008848g0018.1 protein AED:0.20 eAED:0.21 QI:60|0.75|0.4|0.8|0.75|0.4|5|0|915; (*GB) gi|359488670|ref|XP_002273438.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 41-like [Vitis vinifera];; (*SWP) sp|Q9LVX1|C3H41_ARATH (e_value=8e-161) Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1;; (*TAIR) AT3G27700.2 (e_value=6e-162) | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE LENGTH=908;; (*ITAG) Solyc02g086510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43760363-43764291 transcript_region:SL2.40ch02:43760363..43764291- go_terms:GO:0003676,GO:0016020,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 41 (AHRD V1 **-- C3H41_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0016020,GO:0008270,GO:0000166 NbS00008848g0027.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|0.75|0.66|1|4|0|550; (*GB) gi|225452376|ref|XP_002275607.1| (e_value=7e-79) PREDICTED: uncharacterized protein LOC100264681 [Vitis vinifera];; (*TAIR) AT5G14540.1 (e_value=1e-61) | Symbols: | Protein of unknown function (DUF1421) | chr5:4687333-4689624 REVERSE LENGTH=547;; (*ITAG) Solyc02g086520.2.1 (e_value=1e-132) genomic_reference:SL2.40ch02 gene_region:43768094-43773087 transcript_region:SL2.40ch02:43768094..43773087- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00008848g0017.1 protein AED:0.29 eAED:0.29 QI:0|1|0.33|1|0.5|1|3|0|267; (*GB) gi|198400335|gb|ACH87176.1| (e_value=3e-137) 50S ribosomal protein L5 [Camellia sinensis];; (*SWP) sp|O04603|RK5_ARATH (e_value=8e-126) 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1;; (*TAIR) AT4G01310.1 (e_value=6e-127) | Symbols: | Ribosomal L5P family protein | chr4:544166-545480 REVERSE LENGTH=262;; (*ITAG) Solyc09g007560.2.1 (e_value=2e-167) genomic_reference:SL2.40ch09 gene_region:1157881-1159523 transcript_region:SL2.40ch09:1157881..1159523+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- B5TV71_CAMSI); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00041517g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.9|1|0.88|0.8|10|412|694; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44210946-44216059 transcript_region:SL2.40ch12:44210946..44216059- go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00041517g0001.1 protein AED:0.42 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=3e-111) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=4e-111) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=3e-112) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043120.1.1 (e_value=7e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44226370-44230445 transcript_region:SL2.40ch12:44226370..44230445- go_terms:GO:0006265,GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0006265,GO:0005524 NbS00036073g0004.1 protein AED:0.18 eAED:0.18 QI:397|0.33|0.75|1|1|1|4|369|539; (*GB) gi|63087752|emb|CAI93191.1| (e_value=0.0) glycosyltransferase [Solanum tuberosum];; (*SWP) sp|Q9FH90|IX14H_ARATH (e_value=3e-172) Probable beta-1,4-xylosyltransferase IRX14H OS=Arabidopsis thaliana GN=IRX14H PE=2 SV=1;; (*TAIR) AT5G67230.1 (e_value=2e-173) | Symbols: IRX14-L, I14H | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:26822506-26824181 FORWARD LENGTH=492;; (*ITAG) Solyc11g011850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4801869-4806446 transcript_region:SL2.40ch11:4801869..4806446- go_terms:GO:0016020 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 *--- B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0016020 NbS00036073g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|4|0|621; (*GB) gi|225450911|ref|XP_002280644.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Vitis vinifera];; (*SWP) sp|Q9LUL5|PP229_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2;; (*TAIR) AT3G14330.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4779688-4782451 REVERSE LENGTH=710;; (*ITAG) Solyc11g011860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4809870-4811810 transcript_region:SL2.40ch11:4809870..4811810+ go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L337_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00016032g0001.1 protein AED:0.27 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|297849158|ref|XP_002892460.1| (e_value=2e-52) hypothetical protein ARALYDRAFT_470910 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q93WX6|NFS2_ARATH (e_value=2e-53) Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1;; (*TAIR) AT1G08490.1 (e_value=1e-54) | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | chloroplastic NIFS-like cysteine desulfurase | chr1:2685980-2688547 REVERSE LENGTH=463;; (*ITAG) Solyc05g055000.2.1 (e_value=2e-61) genomic_reference:SL2.40ch05 gene_region:63922322-63931643 transcript_region:SL2.40ch05:63922322..63931643+ go_terms:GO:0031071,GO:0009000 functional_description:"Cysteine desulfurase (AHRD V1 **** Q10WM4_TRIEI); contains Interpro domain(s) IPR010970 Cysteine desulfurase, SufS "; GO:0031071,GO:0009000 NbS00007764g0111.1 protein AED:0.15 eAED:0.15 QI:294|1|0.75|1|1|1|4|421|308 NbS00007764g0110.1 protein AED:0.16 eAED:0.16 QI:326|1|1|1|0.66|0.5|4|232|862 NbS00007764g0109.1 protein AED:0.28 eAED:0.28 QI:0|1|0.83|1|1|1|6|309|516 NbS00010392g0003.1 protein AED:0.08 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|410; (*GB) gi|255563897|ref|XP_002522948.1| (e_value=6e-37) hypothetical protein RCOM_0584960 [Ricinus communis];; (*TAIR) AT5G54930.1 (e_value=4e-25) | Symbols: | AT hook motif-containing protein | chr5:22305897-22306839 REVERSE LENGTH=286;; (*ITAG) Solyc07g064560.2.1 (e_value=5e-153) genomic_reference:SL2.40ch07 gene_region:63868844-63871753 transcript_region:SL2.40ch07:63868844..63871753- go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 *--- Q9FFT7_ARATH); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00010392g0002.1 protein AED:0.22 eAED:0.22 QI:202|0.8|0.90|1|0.8|0.72|11|513|481; (*GB) gi|356569824|ref|XP_003553095.1| (e_value=3e-102) PREDICTED: uncharacterized protein LOC100809285 [Glycine max];; (*TAIR) AT5G54920.2 (e_value=3e-77) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22302111-22305576 FORWARD LENGTH=522;; (*ITAG) Solyc07g064550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63859917-63867058 transcript_region:SL2.40ch07:63859917..63867058+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFT8_ARATH)"; NbS00006384g0013.1 protein AED:0.10 eAED:0.15 QI:0|0.5|0|1|0.5|0.66|3|0|339; (*GB) gi|21105748|gb|AAM34773.1|AF509873_1 (e_value=1e-157) nam-like protein 10 [Petunia x hybrida];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=1e-126) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=7e-128) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc11g017470.1.1 (e_value=5e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8422146-8423170 transcript_region:SL2.40ch11:8422146..8423170- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GU14_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00006384g0014.1 protein AED:0.06 eAED:0.07 QI:270|0.5|0.44|1|0.5|0.22|9|517|2063; (*GB) gi|302770689|ref|XP_002968763.1| (e_value=0.0) hypothetical protein SELMODRAFT_90812 [Selaginella moellendorffii];; (*SWP) sp|O22193|PUB4_ARATH (e_value=9e-11) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT1G77460.2 (e_value=0.0) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00058678g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|460|537; (*GB) gi|15233463|ref|NP_193185.1| (e_value=3e-33) SMAD/FHA domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|O23305|Y4449_ARATH (e_value=8e-35) FHA domain-containing protein At4g14490 OS=Arabidopsis thaliana GN=At4g14490 PE=1 SV=1;; (*TAIR) AT4G14490.1 (e_value=6e-36) | Symbols: | SMAD/FHA domain-containing protein | chr4:8332414-8333574 REVERSE LENGTH=386;; (*ITAG) Solyc08g078470.2.1 (e_value=1e-154) genomic_reference:SL2.40ch08 gene_region:59431282-59434544 transcript_region:SL2.40ch08:59431282..59434544- functional_description:"FHA domain containing protein expressed (AHRD V1 *-*- Q6ATJ5_ORYSJ); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00058678g0007.1 protein AED:0.20 eAED:0.21 QI:0|0.66|0.57|1|1|1|7|0|370; (*GB) gi|224071114|ref|XP_002303360.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P49307|MOCA_RHIML (e_value=7e-16) Rhizopine catabolism protein MocA OS=Rhizobium meliloti GN=mocA PE=3 SV=1;; (*TAIR) AT4G17370.1 (e_value=0.0) | Symbols: | Oxidoreductase family protein | chr4:9706188-9708142 FORWARD LENGTH=368;; (*ITAG) Solyc08g078460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59427782-59430565 transcript_region:SL2.40ch08:59427782..59430565+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Inositol 2-dehydrogenase like protein (AHRD V1 **-- O23580_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491,GO:0055114 NbS00058678g0005.1 protein AED:0.51 eAED:0.51 QI:0|0.33|0|0.75|1|1|4|0|97; (*TAIR) AT4G16695.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 21 Blast hits to 21 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9394259-9395251 FORWARD LENGTH=57;; (*ITAG) Solyc08g078480.2.1 (e_value=3e-19) genomic_reference:SL2.40ch08 gene_region:59435749-59437135 transcript_region:SL2.40ch08:59435749..59437135+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021140g0004.1 protein AED:0.23 eAED:0.32 QI:0|0|0|1|0.4|0.33|6|0|214; (*GB) gi|224087841|ref|XP_002308245.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|P46643|AAT1_ARATH (e_value=1e-83) Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1;; (*TAIR) AT2G30970.2 (e_value=1e-84) | Symbols: ASP1 | aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430;; (*ITAG) Solyc07g055210.2.1 (e_value=2e-84) genomic_reference:SL2.40ch07 gene_region:60644169-60648539 transcript_region:SL2.40ch07:60644169..60648539- go_terms:GO:0006520,GO:0009058,GO:0030170 functional_description:"Aspartate aminotransferase (AHRD V1 ***- B9SW33_RICCO); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0006520,GO:0009058,GO:0030170 NbS00021140g0005.1 protein AED:0.46 eAED:0.48 QI:0|0|0|0.5|1|1|4|0|98; (*GB) gi|224087841|ref|XP_002308245.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|P46643|AAT1_ARATH (e_value=1e-22) Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1;; (*TAIR) AT2G30970.2 (e_value=9e-24) | Symbols: ASP1 | aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430;; (*ITAG) Solyc10g075170.1.1 (e_value=5e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58215934-58220414 transcript_region:SL2.40ch10:58215934..58220414+ go_terms:GO:0006520,GO:0009058,GO:0030170 functional_description:"Aspartate aminotransferase (AHRD V1 ***- B9HDA1_POPTR); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0006520,GO:0009058,GO:0030170 NbS00008332g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0.33|0.33|1|1|3|220|60 NbS00008332g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.84|0.88|1|1|1|27|0|1154; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=0.0) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0.0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=0.0) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00008332g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|224126577|ref|XP_002329589.1| (e_value=5e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GT41|PLA1_PLAAC (e_value=4e-17) Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1;; (*TAIR) AT5G46940.1 (e_value=9e-17) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:19058230-19058760 REVERSE LENGTH=176;; (*ITAG) Solyc08g077400.1.1 (e_value=4e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:58438147-58439198 transcript_region:SL2.40ch08:58438147..58439198- go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- A7IZL0_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00008332g0012.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|0|0|3|0|314; (*GB) gi|356565414|ref|XP_003550935.1| (e_value=3e-119) PREDICTED: probable purine permease 11-like [Glycine max];; (*SWP) sp|O49725|PUP10_ARATH (e_value=1e-99) Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=1e-100) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc08g077380.2.1 (e_value=1e-126) genomic_reference:SL2.40ch08 gene_region:58422237-58424301 transcript_region:SL2.40ch08:58422237..58424301- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00045886g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|0.75|4|182|445; (*GB) gi|187940734|gb|ACD39468.1| (e_value=8e-114) BEL5 protein [Solanum etuberosum];; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=1e-65) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=1e-66) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc11g068950.1.1 (e_value=2e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50583105-50587838 transcript_region:SL2.40ch11:50583105..50587838- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00012648g0009.1 protein AED:0.03 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|178 NbS00012648g0022.1 protein AED:0.17 eAED:0.18 QI:485|0.66|0.5|1|0.66|0.5|4|705|1057; (*GB) gi|359488559|ref|XP_002275581.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc02g094480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00012648g0021.1 protein AED:0.28 eAED:0.29 QI:185|1|0.90|1|1|1|11|0|486; (*GB) gi|70663512|emb|CAJ15155.1| (e_value=0.0) sialyltransferase-like protein [Solanum tuberosum];; (*TAIR) AT1G08660.1 (e_value=0.0) | Symbols: MGP2 | MALE GAMETOPHYTE DEFECTIVE 2 | chr1:2757116-2759677 REVERSE LENGTH=474;; (*ITAG) Solyc02g094500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49581916-49597120 transcript_region:SL2.40ch02:49581916..49597120- go_terms:GO:0030173 functional_description:"Alpha-2 8-sialyltransferase 8B 1 (AHRD V1 *-*- B2R9U8_HUMAN); contains Interpro domain(s) IPR001675 Glycosyl transferase, family 29 "; GO:0030173 NbS00012648g0014.1 protein AED:0.29 eAED:0.29 QI:0|0.22|0.4|0.8|1|1|10|428|485; (*GB) gi|255543593|ref|XP_002512859.1| (e_value=1e-161) mitochondrial phosphate carrier protein, putative [Ricinus communis];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=5e-89) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=1e-159) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc02g094470.2.1 (e_value=4e-177) genomic_reference:SL2.40ch02 gene_region:49555143-49558213 transcript_region:SL2.40ch02:49555143..49558213- go_terms:GO:0005315,GO:0015320 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315,GO:0015320 NbS00012648g0029.1 protein AED:0.11 eAED:0.12 QI:0|1|0.66|1|0.8|1|6|0|299; (*GB) gi|357508363|ref|XP_003624470.1| (e_value=2e-62) B3 domain-containing protein [Medicago truncatula];; (*SWP) sp|Q9LW31|FUS3_ARATH (e_value=1e-51) B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2;; (*TAIR) AT3G26790.1 (e_value=1e-52) | Symbols: FUS3 | AP2/B3-like transcriptional factor family protein | chr3:9854025-9855748 REVERSE LENGTH=313;; (*ITAG) Solyc02g094460.1.1 (e_value=2e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49552749-49554537 transcript_region:SL2.40ch02:49552749..49554537+ go_terms:GO:0016563,GO:0003700 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HIZ2_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0016563,GO:0003700 NbS00012648g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|356571628|ref|XP_003553978.1| (e_value=2e-65) PREDICTED: uncharacterized protein LOC100816092 [Glycine max];; (*TAIR) AT2G31410.1 (e_value=2e-60) | Symbols: | unknown protein; Has 1719 Blast hits to 1091 proteins in 184 species: Archae - 5; Bacteria - 24; Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes - 769 (source: NCBI BLink). | chr2:13392220-13392819 REVERSE LENGTH=199;; (*ITAG) Solyc02g094490.2.1 (e_value=3e-91) genomic_reference:SL2.40ch02 gene_region:49580106-49581853 transcript_region:SL2.40ch02:49580106..49581853+ functional_description:"Unknown Protein (AHRD V1)"; NbC25835994g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|163867225|gb|ABY47652.1| (e_value=7e-24) one-helix protein [Ipomoea nil];; (*TAIR) AT1G34000.1 (e_value=4e-20) | Symbols: OHP2 | one-helix protein 2 | chr1:12358151-12358902 REVERSE LENGTH=172;; (*ITAG) Solyc12g056620.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:47949241-47950974 transcript_region:SL2.40ch12:47949241..47950974- functional_description:"One-helix protein (AHRD V1 **-- A9Z0U6_IPONI)"; NbS00057900g0011.1 protein AED:0.25 eAED:0.25 QI:150|0.82|0.66|1|0.58|0.61|18|323|1121; (*GB) gi|302143245|emb|CBI20540.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNP1|PEX1_ARATH (e_value=0.0) Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2;; (*TAIR) AT5G08470.1 (e_value=0.0) | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2742731 FORWARD LENGTH=1130;; (*ITAG) Solyc04g057960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54216450-54236433 transcript_region:SL2.40ch04:54216450..54236433- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 1 (AHRD V1 *--- FTSH1_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00057900g0008.1 protein AED:0.10 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|69; (*ITAG) Solyc09g091110.2.1 (e_value=5e-13) genomic_reference:SL2.40ch09 gene_region:65811942-65813198 transcript_region:SL2.40ch09:65811942..65813198- functional_description:"Unknown Protein (AHRD V1)"; NbS00024264g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.8|1|0.75|1|5|310|352; (*GB) gi|224140795|ref|XP_002323764.1| (e_value=3e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=7e-92) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=5e-93) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85282545-85284363 transcript_region:SL2.40ch01:85282545..85284363- go_terms:GO:0006508,GO:0005737 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508,GO:0005737 NbS00024264g0015.1 protein AED:0.32 eAED:0.32 QI:238|0.75|0.6|1|0.75|0.6|5|0|328; (*GB) gi|356528042|ref|XP_003532614.1| (e_value=7e-86) PREDICTED: metacaspase-1-like [Glycine max];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=1e-63) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=9e-65) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105320.2.1 (e_value=2e-162) genomic_reference:SL2.40ch01 gene_region:85287657-85289770 transcript_region:SL2.40ch01:85287657..85289770- go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00024264g0009.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|374; (*GB) gi|224141233|ref|XP_002323979.1| (e_value=5e-124) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64230.1 (e_value=1e-83) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25692572-25693909 FORWARD LENGTH=379;; (*ITAG) Solyc01g105290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85274367-85276805 transcript_region:SL2.40ch01:85274367..85276805+ go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MSJ1 (AHRD V1 ***- Q9FMG2_ARATH)"; GO:0004867 NbS00024264g0014.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|0|267; (*GB) gi|356525876|ref|XP_003531547.1| (e_value=2e-157) PREDICTED: probable protein phosphatase 2C 10-like [Glycine max];; (*SWP) sp|Q9S9Z7|P2C10_ARATH (e_value=3e-152) Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1;; (*TAIR) AT1G34750.1 (e_value=2e-153) | Symbols: | Protein phosphatase 2C family protein | chr1:12736386-12737727 REVERSE LENGTH=282;; (*ITAG) Solyc01g105280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85268417-85273043 transcript_region:SL2.40ch01:85268417..85273043+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C-like (AHRD V1 ***- A2Q6E4_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00024603g0007.1 protein AED:0.24 eAED:0.24 QI:651|0.8|0.83|1|0.8|0.66|6|0|741; (*GB) gi|147798498|emb|CAN65476.1| (e_value=0.0) hypothetical protein VITISV_018246 [Vitis vinifera];; (*SWP) sp|Q86TV6|TTC7B_HUMAN (e_value=4e-17) Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3;; (*TAIR) AT4G28600.1 (e_value=0.0) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc06g008230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2101453-2108159 transcript_region:SL2.40ch06:2101453..2108159- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* Q7XJB9_ORYSI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00024603g0006.1 protein AED:0.17 eAED:0.17 QI:144|1|1|1|0.66|0.5|4|640|224; (*GB) gi|255584289|ref|XP_002532881.1| (e_value=3e-105) DAG protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-41) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT2G33430.1 (e_value=6e-105) | Symbols: DAL1, DAL | differentiation and greening-like 1 | chr2:14162732-14164729 FORWARD LENGTH=219;; (*ITAG) Solyc06g008220.2.1 (e_value=5e-121) genomic_reference:SL2.40ch06 gene_region:2097959-2101060 transcript_region:SL2.40ch06:2097959..2101060+ functional_description:"DAG protein (AHRD V1 **-- B6TEQ2_MAIZE)"; NbS00020344g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0.33|0.25|4|0|296; (*GB) gi|350537251|ref|NP_001233775.1| (e_value=2e-161) uncharacterized protein LOC544002 [Solanum lycopersicum];; (*SWP) sp|P24397|HY6H_HYONI (e_value=9e-76) Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1;; (*TAIR) AT5G24530.1 (e_value=5e-52) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341;; (*ITAG) Solyc07g043420.2.1 (e_value=4e-164) genomic_reference:SL2.40ch07 gene_region:54503345-54505070 transcript_region:SL2.40ch07:54503345..54505070+ go_terms:GO:0010302,GO:0045431 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 **-* Q9ZSH4_SOLCH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0045431 NbS00020344g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|3|0|236; (*GB) gi|224138074|ref|XP_002322723.1| (e_value=6e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-56) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT3G46670.1 (e_value=9e-27) | Symbols: UGT76E11 | UDP-glucosyl transferase 76E11 | chr3:17192795-17194227 REVERSE LENGTH=451;; (*ITAG) Solyc05g012670.1.1 (e_value=7e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5875384-5876718 transcript_region:SL2.40ch05:5875384..5876718+ go_terms:GO:0047209 functional_description:"Glucosyltransferase-3 (AHRD V1 **** Q8S9A6_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00020344g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|8131701|dbj|BAA96367.1| (e_value=3e-26) ribosomal protein L27 [Panax ginseng];; (*SWP) sp|P51419|RL273_ARATH (e_value=2e-25) 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2;; (*TAIR) AT4G15000.1 (e_value=2e-26) | Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135;; (*ITAG) Solyc07g043360.1.1 (e_value=9e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:54370663-54371070 transcript_region:SL2.40ch07:54370663..54371070- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "; GO:0003735 NbS00059866g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|255565325|ref|XP_002523654.1| (e_value=3e-106) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G19950.1 (e_value=1e-100) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809977-10810942 FORWARD LENGTH=321;; (*ITAG) Solyc01g080910.2.1 (e_value=4e-168) genomic_reference:SL2.40ch01 gene_region:72759939-72761213 transcript_region:SL2.40ch01:72759939..72761213+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021661g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|320; (*GB) gi|19698450|gb|AAL93153.1|AF485267_1 (e_value=8e-159) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=5e-149) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=1e-149) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc01g104860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84946050-84948029 transcript_region:SL2.40ch01:84946050..84948029+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00016972g0002.1 protein AED:0.12 eAED:0.12 QI:433|1|1|1|1|1|2|238|476; (*GB) gi|147815740|emb|CAN74874.1| (e_value=0.0) hypothetical protein VITISV_038921 [Vitis vinifera];; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=4e-137) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT3G25670.1 (e_value=3e-140) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:9344532-9346301 REVERSE LENGTH=475;; (*ITAG) Solyc05g009990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4190580-4192782 transcript_region:SL2.40ch05:4190580..4192782+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00057806g0003.1 protein AED:0.13 eAED:0.13 QI:155|0.75|0.6|1|0.5|0.4|5|0|629; (*GB) gi|225441571|ref|XP_002276694.1| (e_value=2e-162) PREDICTED: uncharacterized protein LOC100246957 [Vitis vinifera];; (*TAIR) AT3G11950.2 (e_value=2e-159) | Symbols: | TRAF-like superfamily protein | chr3:3783273-3785098 REVERSE LENGTH=572;; (*ITAG) Solyc04g049290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:40540155-40542392 transcript_region:SL2.40ch04:40540155..40542392+ go_terms:GO:0008270 functional_description:"Prenyltransferase/ zinc ion binding protein (AHRD V1 *--- B6UAR7_MAIZE); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00057806g0005.1 protein AED:0.66 eAED:1.00 QI:0|0|0|0.66|0|0|3|0|63 NbS00043536g0009.1 protein AED:0.22 eAED:0.22 QI:198|0.54|0.58|0.91|0.72|0.75|12|349|816; (*GB) gi|255544480|ref|XP_002513301.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FKG6|PUB52_ARATH (e_value=4e-107) U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc04g049400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40970359-40975086 transcript_region:SL2.40ch04:40970359..40975086- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00043536g0010.1 protein AED:0.03 eAED:0.03 QI:248|1|0.66|1|0.5|0.33|3|235|309; (*GB) gi|147855038|emb|CAN82378.1| (e_value=3e-160) hypothetical protein VITISV_036229 [Vitis vinifera];; (*TAIR) AT5G19290.1 (e_value=1e-157) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6494113-6495105 FORWARD LENGTH=330;; (*ITAG) Solyc05g056000.2.1 (e_value=4e-174) genomic_reference:SL2.40ch05 gene_region:64542811-64544762 transcript_region:SL2.40ch05:64542811..64544762+ go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00043536g0011.1 protein AED:0.15 eAED:0.19 QI:0|0|0.33|0.66|0|0|3|0|102; (*ITAG) Solyc04g049410.2.1 (e_value=4e-26) genomic_reference:SL2.40ch04 gene_region:41008448-41012773 transcript_region:SL2.40ch04:41008448..41012773+ functional_description:"Unknown Protein (AHRD V1)"; NbS00062197g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|1|0|0.6|5|0|177; (*GB) gi|75172033|sp|Q9FPN0.1|NEC1_PETHY (e_value=2e-92) RecName: Full=Bidirectional sugar transporter NEC1; AltName: Full=NEC1;; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=7e-94) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT5G23660.1 (e_value=1e-59) | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285;; (*ITAG) Solyc03g097560.2.1 (e_value=7e-68) genomic_reference:SL2.40ch03 gene_region:53339881-53341894 transcript_region:SL2.40ch03:53339881..53341894- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- B4FBY7_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00016342g0008.1 protein AED:0.18 eAED:0.18 QI:138|0.66|0.84|1|0.83|0.73|19|80|1054; (*GB) gi|296083158|emb|CBI22794.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01400.1 (e_value=2e-86) | Symbols: ESP4 | HEAT repeat-containing protein | chr5:162803-171072 REVERSE LENGTH=1467;; (*ITAG) Solyc09g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:253408-264455 transcript_region:SL2.40ch09:253408..264455+ go_terms:GO:0005488 functional_description:"Symplekin (AHRD V1 *-*- Q17I55_AEDAE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00016342g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.88|0.8|1|0.77|0.9|10|217|434; (*GB) gi|255574357|ref|XP_002528092.1| (e_value=7e-131) ubiquitin-protein ligase, putative [Ricinus communis];; (*TAIR) AT5G01450.1 (e_value=7e-87) | Symbols: | RING/U-box superfamily protein | chr5:183693-186244 REVERSE LENGTH=444;; (*ITAG) Solyc09g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:245604-252638 transcript_region:SL2.40ch09:245604..252638+ go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RNF34 (AHRD V1 *--- C0H8Z5_SALSA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbC25870929g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|340|239; (*GB) gi|224139146|ref|XP_002326779.1| (e_value=5e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31460.1 (e_value=1e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink). | chr1:11261705-11262610 REVERSE LENGTH=301;; (*ITAG) Solyc07g055880.1.1 (e_value=6e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61118930-61119145 transcript_region:SL2.40ch07:61118930..61119145- functional_description:"Unknown Protein (AHRD V1)"; NbS00026301g0003.1 protein AED:0.01 eAED:0.01 QI:44|1|1|1|1|1|2|673|217; (*GB) gi|224138804|ref|XP_002326694.1| (e_value=8e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17670.1 (e_value=9e-32) | Symbols: | Protein of unknown function (DUF581) | chr4:9833948-9834663 REVERSE LENGTH=159;; (*ITAG) Solyc08g077480.2.1 (e_value=3e-60) genomic_reference:SL2.40ch08 gene_region:58599749-58601339 transcript_region:SL2.40ch08:58599749..58601339+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00034720g0004.1 protein AED:0.06 eAED:0.06 QI:19|1|0.6|1|0.75|0.6|5|135|1061; (*GB) gi|224065587|ref|XP_002301871.1| (e_value=2e-179) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42710.1 (e_value=3e-39) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17125578-17128696 FORWARD LENGTH=807;; (*ITAG) Solyc04g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62098225-62103204 transcript_region:SL2.40ch04:62098225..62103204- functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *-*- Q9FMZ3_ARATH)"; NbS00006317g0015.1 protein AED:0.14 eAED:0.20 QI:0|0.25|0.2|1|1|1|5|0|355; (*GB) gi|224097430|ref|XP_002310931.1| (e_value=2e-87) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK31|Y3272_ARATH (e_value=1e-67) Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1;; (*TAIR) AT1G51540.1 (e_value=4e-83) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115702-19117381 FORWARD LENGTH=415;; (*ITAG) Solyc03g123910.2.1 (e_value=1e-93) genomic_reference:SL2.40ch03 gene_region:64662295-64666735 transcript_region:SL2.40ch03:64662295..64666735- go_terms:GO:0005515 functional_description:"Kelch-like protein 20 (AHRD V1 ***- KLH20_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00006317g0013.1 protein AED:0.24 eAED:0.24 QI:225|0|0.5|1|0|0.5|2|940|86; (*GB) gi|225470664|ref|XP_002268964.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100260603 isoform 1 [Vitis vinifera];; (*TAIR) AT4G30010.1 (e_value=3e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14672947-14673219 FORWARD LENGTH=90;; (*ITAG) Solyc06g063310.1.1 (e_value=3e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36402097-36402360 transcript_region:SL2.40ch06:36402097..36402360- functional_description:"Fiber protein Fb15 (Fragment) (AHRD V1 ***- B4UW72_ARAHY)"; NbS00006317g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|57013960|ref|YP_173432.1| (e_value=4e-73) hypothetical protein NitaMp093 [Nicotiana tabacum];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=3e-47) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=3e-48) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc01g107270.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:86633333-86638322 transcript_region:SL2.40ch01:86633333..86638322- go_terms:GO:0006189,GO:0003824 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 ***- A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0006189,GO:0003824 NbS00006317g0014.1 protein AED:0.34 eAED:0.37 QI:0|0.4|0.33|0.66|0.8|0.66|6|0|608; (*GB) gi|255544532|ref|XP_002513327.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=0.0) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=0.0) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc03g123920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64668191-64674499 transcript_region:SL2.40ch03:64668191..64674499- functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00006317g0017.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|204; (*GB) gi|57013961|ref|YP_173433.1| (e_value=2e-103) hypothetical protein NitaMp094 [Nicotiana tabacum];; (*ITAG) Solyc11g063540.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46707632-46708586 transcript_region:SL2.40ch11:46707632..46708586+ functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- Q18L80_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00024054g0001.1 protein AED:0.15 eAED:0.16 QI:0|0.6|0.66|1|1|1|6|0|557; (*GB) gi|254762128|gb|ACT80136.1| (e_value=0.0) transcription factor WRKY [Capsicum annuum];; (*SWP) sp|Q9C519|WRKY6_ARATH (e_value=5e-103) WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1;; (*TAIR) AT1G62300.1 (e_value=4e-104) | Symbols: WRKY6, ATWRKY6 | WRKY family transcription factor | chr1:23016887-23019155 REVERSE LENGTH=553;; (*ITAG) Solyc02g080890.2.1 (e_value=5e-176) genomic_reference:SL2.40ch02 gene_region:39569094-39571649 transcript_region:SL2.40ch02:39569094..39571649- go_terms:GO:0005515,GO:0010843 functional_description:"Transcription factor WRKY (AHRD V1 ***- C7E5X8_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00035787g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|260 NbS00049252g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|85 NbS00016277g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0.88|1|0.87|0.88|9|0|572; (*GB) gi|225441391|ref|XP_002278205.1| (e_value=0.0) PREDICTED: TBCC domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|A4IF93|TBCC1_BOVIN (e_value=9e-31) TBCC domain-containing protein 1 OS=Bos taurus GN=TBCCD1 PE=2 SV=1;; (*TAIR) AT3G57890.1 (e_value=0.0) | Symbols: | Tubulin binding cofactor C domain-containing protein | chr3:21438271-21441695 FORWARD LENGTH=573;; (*ITAG) Solyc10g080440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61036122-61045515 transcript_region:SL2.40ch10:61036122..61045515+ go_terms:GO:0005488 functional_description:"TBCC domain-containing protein 1 (AHRD V1 ***- TBCC1_XENTR); contains Interpro domain(s) IPR012945 Tubulin binding cofactor C "; GO:0005488 NbS00016277g0007.1 protein AED:0.45 eAED:0.45 QI:0|0|0.25|0.5|1|1|4|71|60 NbS00002307g0004.1 protein AED:0.00 eAED:0.00 QI:78|1|1|1|0|0.5|2|505|100; (*GB) gi|255541102|ref|XP_002511615.1| (e_value=3e-35) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G60480.1 (e_value=1e-31) | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22347680-22348208 REVERSE LENGTH=111;; (*ITAG) Solyc01g090500.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:75932308-75936728 transcript_region:SL2.40ch01:75932308..75936728+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002307g0007.1 protein AED:0.38 eAED:0.39 QI:0|0.83|0.28|1|0.66|0.57|7|0|245; (*GB) gi|224067574|ref|XP_002302508.1| (e_value=6e-109) predicted protein [Populus trichocarpa];; (*TAIR) AT4G00026.1 (e_value=1e-97) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11634-13285 REVERSE LENGTH=269;; (*ITAG) Solyc08g081430.2.1 (e_value=1e-152) genomic_reference:SL2.40ch08 gene_region:61664027-61670068 transcript_region:SL2.40ch08:61664027..61670068+ functional_description:"TIM21-like protein mitochondrial (AHRD V1 ***- C3KHJ2_ANOFI); contains Interpro domain(s) IPR013261 Mitochondrial inner membrane translocase complex, subunit Tim21 "; NbS00017086g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|191; (*GB) gi|147802500|emb|CAN64163.1| (e_value=4e-95) hypothetical protein VITISV_040646 [Vitis vinifera];; (*SWP) sp|Q0P457|KTI12_DANRE (e_value=2e-21) Protein KTI12 homolog OS=Danio rerio GN=kti12 PE=2 SV=2;; (*TAIR) AT1G13870.1 (e_value=1e-81) | Symbols: DRL1, AtKTI12 | calmodulin binding;purine nucleotide binding | chr1:4747437-4748345 REVERSE LENGTH=302;; (*ITAG) Solyc08g008250.1.1 (e_value=1e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2689085-2689837 transcript_region:SL2.40ch08:2689085..2689837+ go_terms:GO:0003682 functional_description:"KTI12 homolog (AHRD V1 ***- B5X8A8_SALSA); contains Interpro domain(s) IPR013641 Chromatin associated protein KTI12 "; GO:0003682 NbS00062001g0004.1 protein AED:0.15 eAED:0.16 QI:154|0.5|0.4|1|0.25|0.4|5|0|296; (*GB) gi|255559625|ref|XP_002520832.1| (e_value=1e-56) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SHB5|WRK55_ARATH (e_value=4e-37) WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1;; (*TAIR) AT2G40740.1 (e_value=3e-38) | Symbols: WRKY55, ATWRKY55 | WRKY DNA-binding protein 55 | chr2:16997177-16999276 FORWARD LENGTH=292;; (*ITAG) Solyc06g048870.1.1 (e_value=1e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28334966-28338066 transcript_region:SL2.40ch06:28334966..28338066- go_terms:GO:0045449 functional_description:"WRKY transcription factor 75 (AHRD V1 ***- Q6IEK6_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00028169g0003.1 protein AED:0.36 eAED:0.36 QI:355|0.66|0.5|1|0.33|0.25|4|0|213; (*GB) gi|356525555|ref|XP_003531390.1| (e_value=1e-47) PREDICTED: UDP-galactose transporter 2-like [Glycine max];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=4e-19) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT4G09810.1 (e_value=1e-47) | Symbols: | Nucleotide-sugar transporter family protein | chr4:6175415-6176892 REVERSE LENGTH=335;; (*ITAG) Solyc04g051500.2.1 (e_value=6e-62) genomic_reference:SL2.40ch04 gene_region:49811319-49813443 transcript_region:SL2.40ch04:49811319..49813443+ go_terms:GO:0008514 functional_description:"Integral membrane protein like (AHRD V1 **-- B6TAA4_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00030269g0005.1 protein AED:0.15 eAED:0.15 QI:9|1|0.8|1|0.5|0.6|5|381|472; (*GB) gi|225445951|ref|XP_002264547.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At1g16860 [Vitis vinifera];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=0.0) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=0.0) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc12g017450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6713635-6717263 transcript_region:SL2.40ch12:6713635..6717263+ functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00030269g0102.1 protein AED:0.29 eAED:0.29 QI:184|0.5|0.66|1|0|0.33|3|490|364 NbS00030269g0107.1 protein AED:0.07 eAED:0.07 QI:0|0.90|0.75|1|1|1|12|261|682 NbS00001307g0007.1 protein AED:0.08 eAED:0.08 QI:130|1|1|1|1|1|3|307|372; (*GB) gi|259121419|gb|ACV92029.1| (e_value=3e-65) WRKY transcription factor 27 [(Populus tomentosa x P. bolleana) x P. tomentosa];; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=2e-42) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.1 (e_value=2e-43) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=313;; (*ITAG) Solyc03g007380.1.1 (e_value=2e-110) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:1929376-1930601 transcript_region:SL2.40ch03:1929376..1930601+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 27 (AHRD V1 ***- C9DI16_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00001307g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.8|1|1|1|5|0|518; (*GB) gi|225462725|ref|XP_002268709.1| (e_value=0.0) PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=3e-39) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT5G24120.1 (e_value=0.0) | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr5:8157794-8159746 REVERSE LENGTH=517;; (*ITAG) Solyc03g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1915174-1919474 transcript_region:SL2.40ch03:1915174..1919474- go_terms:GO:0003899,GO:0003677 functional_description:"RNA polymerase sigma factor (AHRD V1 *-** C7QR23_CYAP0); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0003899,GO:0003677 NbS00012738g0022.1 protein AED:0.02 eAED:0.02 QI:14|1|1|1|0.33|0.5|4|48|502; (*GB) gi|255562524|ref|XP_002522268.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G17030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc02g072040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35912808-35914648 transcript_region:SL2.40ch02:35912808..35914648+ functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00012738g0024.1 protein AED:0.09 eAED:0.09 QI:0|0.28|0.12|1|0.28|0.25|8|0|1009; (*GB) gi|75248609|sp|Q8W1E0.1|R1A_SOLDE (e_value=0.0) RecName: Full=Late blight resistance protein R1-A; Short=Protein R1;; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=5e-25) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g007350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00012738g0013.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|305; (*GB) gi|356545733|ref|XP_003541290.1| (e_value=3e-20) PREDICTED: heat stress transcription factor A-2-like [Glycine max];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=8e-20) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=6e-21) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc02g072060.1.1 (e_value=2e-114) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35920510-35921838 transcript_region:SL2.40ch02:35920510..35921838+ go_terms:GO:0005634 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00012738g0017.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|1|1|3|0|609; (*GB) gi|30013679|gb|AAP03882.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 276 [Nicotiana tabacum];; (*SWP) sp|Q9C7R6|PUB17_ARATH (e_value=0.0) U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1;; (*TAIR) AT1G29340.1 (e_value=0.0) | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:10264412-10266601 FORWARD LENGTH=729;; (*ITAG) Solyc02g072080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35929890-35932064 transcript_region:SL2.40ch02:35929890..35932064- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein 17 (AHRD V1 **-- PUB17_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00012738g0005.1 protein AED:0.29 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|224079025|ref|XP_002305722.1| (e_value=1e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=3e-36) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=2e-37) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00012738g0004.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|255569833|ref|XP_002525880.1| (e_value=4e-82) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=6e-52) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=5e-53) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=2e-124) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00012738g0006.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc02g072070.2.1 (e_value=1e-42) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00014426g0004.1 protein AED:0.22 eAED:0.22 QI:151|1|1|1|0.5|0.4|5|242|209; (*GB) gi|359472952|ref|XP_002279311.2| (e_value=3e-104) PREDICTED: 50S ribosomal protein L15, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P25873|RK15_ARATH (e_value=8e-102) 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2;; (*TAIR) AT3G25920.1 (e_value=6e-103) | Symbols: RPL15 | ribosomal protein L15 | chr3:9491268-9492558 REVERSE LENGTH=277;; (*ITAG) Solyc05g009370.2.1 (e_value=9e-123) genomic_reference:SL2.40ch05 gene_region:3518447-3524365 transcript_region:SL2.40ch05:3518447..3524365- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 *-*- B4B3P1_9CHRO); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00023186g0006.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.66|0|0.33|3|0|238; (*GB) gi|224140209|ref|XP_002323477.1| (e_value=2e-25) SAUR family protein [Populus trichocarpa];; (*TAIR) AT2G28085.1 (e_value=6e-19) | Symbols: | SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124;; (*ITAG) Solyc10g084020.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63012410-63012805 transcript_region:SL2.40ch10:63012410..63012805+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q2HTF3_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00015710g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|510; (*GB) gi|224138190|ref|XP_002322752.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=0.0) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc02g087500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44500692-44502990 transcript_region:SL2.40ch02:44500692..44502990- go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00015710g0002.1 protein AED:0.32 eAED:0.33 QI:0|1|0.33|1|1|1|3|0|110; (*GB) gi|215490183|dbj|BAG86625.1| (e_value=2e-60) type 2 proly 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=3e-14) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT3G28480.1 (e_value=3e-52) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr3:10676266-10678262 REVERSE LENGTH=316;; (*ITAG) Solyc02g067530.2.1 (e_value=2e-63) genomic_reference:SL2.40ch02 gene_region:32274270-32278858 transcript_region:SL2.40ch02:32274270..32278858+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00015710g0014.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.33|0.66|1|1|3|0|76; (*GB) gi|255552788|ref|XP_002517437.1| (e_value=4e-21) prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis];; (*TAIR) AT3G28480.1 (e_value=3e-23) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr3:10676266-10678262 REVERSE LENGTH=316;; (*ITAG) Solyc02g067530.2.1 (e_value=1e-23) genomic_reference:SL2.40ch02 gene_region:32274270-32278858 transcript_region:SL2.40ch02:32274270..32278858+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00015710g0008.1 protein AED:0.12 eAED:0.12 QI:327|1|1|1|0.75|0.77|9|386|515; (*GB) gi|255552782|ref|XP_002517434.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G59650.1 (e_value=3e-170) | Symbols: CW14 | Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492;; (*ITAG) Solyc02g087480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44493134-44496742 transcript_region:SL2.40ch02:44493134..44496742+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00013267g0002.1 protein AED:0.27 eAED:0.30 QI:0|0|0|1|1|1|3|0|306; (*GB) gi|289468083|gb|ADC95722.1| (e_value=2e-58) 9-cis epoxycarotenoid dioxygenase [Citrullus lanatus];; (*SWP) sp|Q9LRM7|NCED6_ARATH (e_value=5e-52) 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1;; (*TAIR) AT3G24220.1 (e_value=4e-53) | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577;; (*ITAG) Solyc05g053530.1.1 (e_value=6e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62757011-62758762 transcript_region:SL2.40ch05:62757011..62758762- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase 6"; GO:0045549 NbS00013267g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|225433416|ref|XP_002283185.1| (e_value=4e-16) PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LRM7|NCED6_ARATH (e_value=8e-11) 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1;; (*TAIR) AT3G24220.1 (e_value=6e-12) | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577;; (*ITAG) Solyc05g053530.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62757011-62758762 transcript_region:SL2.40ch05:62757011..62758762- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase 6"; GO:0045549 NbS00016791g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|335; (*GB) gi|225428362|ref|XP_002280082.1| (e_value=1e-172) PREDICTED: uncharacterized protein LOC100252027 [Vitis vinifera];; (*TAIR) AT4G38160.1 (e_value=1e-153) | Symbols: pde191 | Mitochondrial transcription termination factor family protein | chr4:17902412-17903413 FORWARD LENGTH=333;; (*ITAG) Solyc11g044360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35622072-35623025 transcript_region:SL2.40ch11:35622072..35623025- functional_description:"At4g38160-like protein (Fragment) (AHRD V1 *--- C0JEI1_9BRAS); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00016791g0014.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|0.25|0.6|5|0|370; (*GB) gi|255561198|ref|XP_002521611.1| (e_value=2e-178) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FVV1|GDL28_ARATH (e_value=2e-170) GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1;; (*TAIR) AT1G71250.1 (e_value=2e-171) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26860125-26861582 FORWARD LENGTH=374;; (*ITAG) Solyc11g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34833475-34835605 transcript_region:SL2.40ch11:34833475..34835605+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00016791g0013.1 protein AED:0.27 eAED:0.27 QI:113|1|0.75|1|1|0.75|4|0|187; (*GB) gi|225459957|ref|XP_002266658.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100261996 [Vitis vinifera];; (*TAIR) AT1G71310.1 (e_value=3e-78) | Symbols: | cobalt ion binding | chr1:26878717-26879844 REVERSE LENGTH=176;; (*ITAG) Solyc08g005060.2.1 (e_value=7e-90) genomic_reference:SL2.40ch08 gene_region:48135-51527 transcript_region:SL2.40ch08:48135..51527- go_terms:GO:0050897 functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- Q9LEH5_HORVU)"; GO:0050897 NbS00016791g0009.1 protein AED:0.33 eAED:0.33 QI:0|0.75|0.8|1|1|1|5|0|260; (*GB) gi|224126549|ref|XP_002319865.1| (e_value=1e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9I8B3|RB24B_XENLA (e_value=8e-31) RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1;; (*TAIR) AT1G33470.2 (e_value=6e-74) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:12144632-12146040 FORWARD LENGTH=244;; (*ITAG) Solyc11g044470.1.1 (e_value=2e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:35784022-35789351 transcript_region:SL2.40ch11:35784022..35789351+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A2/B1-like (AHRD V1 *--- Q5ZDX8_ORYSJ); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00016519g0001.1 protein AED:0.06 eAED:0.06 QI:70|1|1|1|0|0|2|438|64 NbS00026864g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.9|0.63|1|0.9|0.90|11|537|623; (*GB) gi|225434343|ref|XP_002276484.1| (e_value=0.0) PREDICTED: insulin-degrading enzyme-like [Vitis vinifera];; (*SWP) sp|Q24K02|IDE_BOVIN (e_value=2e-87) Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1;; (*TAIR) AT1G06900.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr1:2115155-2120635 REVERSE LENGTH=1024;; (*ITAG) Solyc02g043860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22693123-22723451 transcript_region:SL2.40ch02:22693123..22723451- go_terms:GO:0042803 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q8CGB9_MOUSE); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0042803 NbS00026864g0008.1 protein AED:0.16 eAED:0.33 QI:0|0.5|0.55|1|0.5|0.33|9|0|297; (*GB) gi|145335200|ref|NP_172173.2| (e_value=2e-70) putative N-arginine dibasic convertase [Arabidopsis thaliana];; (*SWP) sp|Q06010|STE23_YEAST (e_value=5e-33) A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2;; (*TAIR) AT1G06900.1 (e_value=4e-73) | Symbols: | Insulinase (Peptidase family M16) family protein | chr1:2115155-2120635 REVERSE LENGTH=1024;; (*ITAG) Solyc02g043860.2.1 (e_value=8e-73) genomic_reference:SL2.40ch02 gene_region:22693123-22723451 transcript_region:SL2.40ch02:22693123..22723451- go_terms:GO:0042803 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q8CGB9_MOUSE); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0042803 NbS00026864g0107.1 protein AED:0.19 eAED:0.15 QI:560|0.87|0.55|1|0.75|0.88|9|0|1064 NbS00025259g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|0.5|0.33|3|0|159; (*GB) gi|351723575|ref|NP_001235748.1| (e_value=5e-64) MYB transcription factor MYB75 [Glycine max];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=7e-13) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=2e-59) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc05g052610.2.1 (e_value=1e-74) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00025259g0006.1 protein AED:0.23 eAED:0.35 QI:63|0.33|0|1|1|1|4|0|172; (*GB) gi|350538149|ref|NP_001234585.1| (e_value=2e-79) chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum];; (*SWP) sp|O20252|S17P_SPIOL (e_value=2e-76) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=5e-75) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=3e-82) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00004042g0010.1 protein AED:0.03 eAED:0.03 QI:119|1|1|1|0.8|0.66|6|129|639; (*GB) gi|359474015|ref|XP_002269627.2| (e_value=0.0) PREDICTED: RNA-binding protein NOB1-like [Vitis vinifera];; (*SWP) sp|Q9ULX3|NOB1_HUMAN (e_value=3e-32) RNA-binding protein NOB1 OS=Homo sapiens GN=NOB1 PE=1 SV=1;; (*TAIR) AT5G41190.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16487628-16490012 REVERSE LENGTH=602;; (*ITAG) Solyc08g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2487058-2490650 transcript_region:SL2.40ch08:2487058..2490650- functional_description:"RNA-binding protein NOB1 (AHRD V1 *-*- C1C2G7_9MAXI); contains Interpro domain(s) IPR017117 D-site 20S pre-rRNA nuclease "; NbS00004042g0006.1 protein AED:0.16 eAED:0.16 QI:150|0.75|0.8|1|0.5|0.4|5|0|229; (*GB) gi|225426387|ref|XP_002269706.1| (e_value=3e-85) PREDICTED: probable serine racemase [Vitis vinifera];; (*SWP) sp|Q76EQ0|SRR_RAT (e_value=1e-52) Serine racemase OS=Rattus norvegicus GN=Srr PE=1 SV=1;; (*TAIR) AT4G11640.1 (e_value=1e-86) | Symbols: ATSR, SR | serine racemase | chr4:7021770-7023252 FORWARD LENGTH=331;; (*ITAG) Solyc08g008010.2.1 (e_value=1e-98) genomic_reference:SL2.40ch08 gene_region:2504117-2508014 transcript_region:SL2.40ch08:2504117..2508014- go_terms:GO:0030378 functional_description:"Serine/threonine dehydratase (AHRD V1 **** A8J977_CHLRE); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0030378 NbS00004042g0009.1 protein AED:0.40 eAED:0.52 QI:0|0|0.2|0.4|1|1|5|349|151 NbS00004042g0008.1 protein AED:0.34 eAED:0.57 QI:0|0|0.16|1|0.8|0.83|6|281|198 NbS00001547g0006.1 protein AED:0.55 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|213; (*GB) gi|15209179|gb|AAK91897.1|AC091627_10 (e_value=2e-11) Hsp20/alpha crystallin family protein [Solanum demissum];; (*ITAG) Solyc01g009200.2.1 (e_value=3e-32) genomic_reference:SL2.40ch01 gene_region:3240198-3241560 transcript_region:SL2.40ch01:3240198..3241560- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K219_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00001547g0022.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|1|0.66|3|0|679; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-137) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-136) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001547g0020.1 protein AED:0.34 eAED:0.35 QI:0|0|0|0.81|0.26|0.31|16|0|1301; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9CAN0|PPR99_ARATH (e_value=5e-94) Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1;; (*TAIR) AT1G63130.1 (e_value=3e-95) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23412854-23414746 FORWARD LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00018081g0024.1 protein AED:0.11 eAED:0.11 QI:78|0.78|0.73|1|0.64|0.66|15|169|1513; (*GB) gi|359489522|ref|XP_002272635.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254106 [Vitis vinifera];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=0.0) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT4G00230.1 (e_value=0.0) | Symbols: XSP1 | xylem serine peptidase 1 | chr4:93935-97289 FORWARD LENGTH=749;; (*ITAG) Solyc01g091920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77214251-77216739 transcript_region:SL2.40ch01:77214251..77216739- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00018081g0025.1 protein AED:0.20 eAED:0.22 QI:0|0.72|0.58|1|0.81|0.75|12|0|1040; (*GB) gi|350538889|ref|NP_001234108.1| (e_value=0.0) phospholipase PLDb2 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=0.0) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=0.0) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc01g091910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77200212-77210933 transcript_region:SL2.40ch01:77200212..77210933- go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00018081g0008.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|78 NbS00018081g0001.1 protein AED:0.10 eAED:0.10 QI:210|0.8|0.66|1|0.8|0.66|6|451|407; (*GB) gi|317106625|dbj|BAJ53131.1| (e_value=0.0) JHL05D22.2 [Jatropha curcas];; (*SWP) sp|Q8VYD9|CAF1M_ARATH (e_value=7e-161) CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana GN=At4g31010 PE=2 SV=1;; (*TAIR) AT4G31010.1 (e_value=5e-162) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr4:15106708-15108446 FORWARD LENGTH=405;; (*ITAG) Solyc01g091940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77231547-77235545 transcript_region:SL2.40ch01:77231547..77235545+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00018081g0027.1 protein AED:0.28 eAED:0.28 QI:259|0.71|0.62|1|0.71|0.87|8|3|340; (*GB) gi|359489402|ref|XP_002272931.2| (e_value=9e-144) PREDICTED: peroxisome biogenesis protein 16-like [Vitis vinifera];; (*SWP) sp|Q8S8S1|PEX16_ARATH (e_value=8e-116) Peroxisome biogenesis protein 16 OS=Arabidopsis thaliana GN=PEX16 PE=1 SV=1;; (*TAIR) AT2G45690.1 (e_value=6e-117) | Symbols: SSE1, SSE, PEX16, ATPEX16 | shrunken seed protein (SSE1) | chr2:18823465-18825601 REVERSE LENGTH=367;; (*ITAG) Solyc01g091900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77191847-77197847 transcript_region:SL2.40ch01:77191847..77197847+ functional_description:"Peroxisomal membrane protein PEX16 (AHRD V1 ***- B0XLA6_CULQU); contains Interpro domain(s) IPR013919 Peroxisome membrane protein, Pex16 "; NbS00021177g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|275; (*GB) gi|350534898|ref|NP_001234421.1| (e_value=1e-130) CHI protein [Solanum lycopersicum];; (*TAIR) AT3G63170.1 (e_value=6e-39) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc02g067870.2.1 (e_value=2e-133) genomic_reference:SL2.40ch02 gene_region:32544191-32545408 transcript_region:SL2.40ch02:32544191..32545408- go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- Q0G877_CAMSI); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00021177g0008.1 protein AED:0.35 eAED:0.35 QI:19|0.66|0.57|1|1|1|7|0|278; (*GB) gi|225452318|ref|XP_002272928.1| (e_value=1e-139) PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=3e-107) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G14500.1 (e_value=5e-135) | Symbols: | aldose 1-epimerase family protein | chr5:4674503-4676368 REVERSE LENGTH=306;; (*ITAG) Solyc02g067860.2.1 (e_value=5e-159) genomic_reference:SL2.40ch02 gene_region:32540131-32544141 transcript_region:SL2.40ch02:32540131..32544141+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7M6K2_ARALY); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00000427g0007.1 protein AED:0.26 eAED:0.27 QI:337|1|0.92|1|1|1|13|0|814; (*GB) gi|359476532|ref|XP_002268094.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera];; (*SWP) sp|Q0WPZ6|PP158_ARATH (e_value=6e-12) Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1;; (*TAIR) AT3G04260.1 (e_value=0.0) | Symbols: PTAC3 | plastid transcriptionally active 3 | chr3:1123231-1127515 REVERSE LENGTH=910;; (*ITAG) Solyc04g050540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46684389-46704238 transcript_region:SL2.40ch04:46684389..46704238- go_terms:GO:0003677 functional_description:"Pentatricopeptide repeat protein (AHRD V1 *-*- Q1G1I8_MAIZE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003677 NbS00006807g0006.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|1|1|5|311|359; (*GB) gi|225452496|ref|XP_002279099.1| (e_value=5e-158) PREDICTED: uncharacterized protein LOC100247524 [Vitis vinifera];; (*TAIR) AT5G14790.1 (e_value=6e-123) | Symbols: | ARM repeat superfamily protein | chr5:4784058-4785508 FORWARD LENGTH=346;; (*ITAG) Solyc02g086940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44106511-44108900 transcript_region:SL2.40ch02:44106511..44108900+ go_terms:GO:0005488 functional_description:"FAM179B protein (Fragment) (AHRD V1 *--- Q6P183_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00048549g0001.1 protein AED:0.22 eAED:0.34 QI:0|0|0|1|1|1|3|0|322; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-72) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc10g049290.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:40360665-40362200 transcript_region:SL2.40ch10:40360665..40362200+ go_terms:GO:0005840 functional_description:"Mutator-like transposase-like (AHRD V1 **-- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0005840 NbS00007372g0013.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0.5|0.66|3|0|494; (*GB) gi|1864017|dbj|BAA09709.1| (e_value=0.0) elongation factor-1 alpha [Nicotiana tabacum];; (*SWP) sp|P43643|EF1A_TOBAC (e_value=0.0) Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00007372g0007.1 protein AED:0.46 eAED:0.51 QI:0|0.25|0.2|1|1|0.8|5|9|135; (*GB) gi|359479048|ref|XP_002264005.2| (e_value=8e-43) PREDICTED: protein disulfide-isomerase 5-1 [Vitis vinifera];; (*SWP) sp|Q10N04|PDI51_ORYSJ (e_value=4e-40) Protein disulfide isomerase-like 5-1 OS=Oryza sativa subsp. japonica GN=PDIL5-1 PE=2 SV=1;; (*TAIR) AT1G07960.1 (e_value=7e-40) | Symbols: ATPDIL5-1, PDIL5-1 | PDI-like 5-1 | chr1:2467681-2468831 FORWARD LENGTH=146;; (*ITAG) Solyc11g069690.1.1 (e_value=5e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51383609-51389361 transcript_region:SL2.40ch11:51383609..51389361+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD4_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00007372g0008.1 protein AED:0.06 eAED:0.06 QI:277|0.90|0.91|1|0.54|0.66|12|194|750; (*GB) gi|225436522|ref|XP_002273792.1| (e_value=0.0) PREDICTED: ABC transporter G family member 3 [Vitis vinifera];; (*SWP) sp|Q9ZUU9|AB3G_ARATH (e_value=0.0) ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2;; (*TAIR) AT2G28070.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730;; (*ITAG) Solyc11g069710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51394342-51402692 transcript_region:SL2.40ch11:51394342..51402692- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 3 (AHRD V1 ***- AB3G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00011139g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|225441405|ref|XP_002278550.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera];; (*TAIR) AT3G57930.2 (e_value=1e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g080450.1.1 (e_value=6e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61048317-61048733 transcript_region:SL2.40ch10:61048317..61048733- functional_description:"Unknown Protein (AHRD V1)"; NbS00030450g0011.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0.25|0.2|5|0|494; (*GB) gi|255545000|ref|XP_002513561.1| (e_value=2e-122) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-66) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=4e-77) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc02g079610.2.1 (e_value=2e-173) genomic_reference:SL2.40ch02 gene_region:38702972-38704500 transcript_region:SL2.40ch02:38702972..38704500+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00030450g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|224094628|ref|XP_002310190.1| (e_value=8e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23690.1 (e_value=6e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00030450g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|13449382|ref|NP_085564.1| (e_value=1e-21) hypothetical protein ArthMp097 [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=4e-23) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*ITAG) ATMG01110.1 (e_value=3e-24) | Symbols: ORF251 | Mitovirus RNA-dependent RNA polymerase | chrM:283034-283789 REVERSE LENGTH=251;; (*ITAG) Solyc00g142170.2.1 (e_value=2e-40) genomic_reference:SL2.40ch00 gene_region:17156703-17158111 transcript_region:SL2.40ch00:17156703..17158111- functional_description:"RNA-dependent RNA polymerase (AHRD V1 *-*- Q18L78_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00030450g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|4|0|210; (*GB) gi|147793125|emb|CAN75336.1| (e_value=4e-45) hypothetical protein VITISV_012698 [Vitis vinifera];; (*TAIR) AT3G02680.1 (e_value=1e-32) | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome 1 | chr3:576378-579226 FORWARD LENGTH=542;; (*ITAG) Solyc02g081520.2.1 (e_value=3e-97) genomic_reference:SL2.40ch02 gene_region:40021708-40034066 transcript_region:SL2.40ch02:40021708..40034066- go_terms:GO:0005622 functional_description:"Nibrin (AHRD V1 *--- Q3SZL4_BOVIN); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0005622 NbS00030450g0010.1 protein AED:0.73 eAED:0.74 QI:0|0|0|1|0|0|2|0|57; (*ITAG) Solyc02g081520.2.1 (e_value=1e-23) genomic_reference:SL2.40ch02 gene_region:40021708-40034066 transcript_region:SL2.40ch02:40021708..40034066- go_terms:GO:0005622 functional_description:"Nibrin (AHRD V1 *--- Q3SZL4_BOVIN); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0005622 NbS00056344g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|4|561|255; (*GB) gi|44917135|dbj|BAD12168.1| (e_value=0.0) 14-3-3 a-1 protein [Nicotiana tabacum];; (*SWP) sp|P93342|1433A_TOBAC (e_value=0.0) 14-3-3-like protein A OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=9e-163) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g012120.2.1 (e_value=1e-176) genomic_reference:SL2.40ch04 gene_region:4428571-4430128 transcript_region:SL2.40ch04:4428571..4430128- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00021384g0017.1 protein AED:0.17 eAED:0.17 QI:685|0.75|0.8|1|1|1|5|258|329; (*GB) gi|359490175|ref|XP_002268693.2| (e_value=3e-105) PREDICTED: uncharacterized protein LOC100254941 [Vitis vinifera];; (*TAIR) AT5G62260.1 (e_value=3e-58) | Symbols: | AT hook motif DNA-binding family protein | chr5:25009331-25011348 FORWARD LENGTH=404;; (*ITAG) Solyc06g035430.2.1 (e_value=5e-162) genomic_reference:SL2.40ch06 gene_region:20998594-21003305 transcript_region:SL2.40ch06:20998594..21003305- functional_description:"AT-hook motif nuclear localized protein 3 (AHRD V1 ***- Q9SB31_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; NbS00021384g0015.1 protein AED:0.01 eAED:0.01 QI:77|1|1|1|1|1|3|138|248; (*GB) gi|225455627|ref|XP_002271141.1| (e_value=7e-46) PREDICTED: transcription factor bHLH120 [Vitis vinifera];; (*SWP) sp|Q9FLI0|BH120_ARATH (e_value=2e-33) Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2;; (*TAIR) AT5G51790.1 (e_value=1e-34) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21039762-21040594 FORWARD LENGTH=204;; (*ITAG) Solyc06g035490.2.1 (e_value=8e-91) genomic_reference:SL2.40ch06 gene_region:21066995-21068635 transcript_region:SL2.40ch06:21066995..21068635+ go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *-** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00021384g0016.1 protein AED:0.03 eAED:0.03 QI:262|0.75|0.8|1|0.75|0.6|5|131|541; (*GB) gi|255539591|ref|XP_002510860.1| (e_value=0.0) glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=0.0) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT3G56060.1 (e_value=0.0) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr3:20803328-20805983 REVERSE LENGTH=577;; (*ITAG) Solyc06g035580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21287092-21293012 transcript_region:SL2.40ch06:21287092..21293012- go_terms:GO:0016614,GO:0016491,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- C0G363_9RHIZ); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0016491,GO:0006066,GO:0050660 NbS00009696g0006.1 protein AED:0.09 eAED:0.09 QI:407|1|1|1|1|1|6|577|738; (*GB) gi|225429224|ref|XP_002263530.1| (e_value=0.0) PREDICTED: oligopeptide transporter 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FME8|OPT4_ARATH (e_value=0.0) Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1;; (*TAIR) AT5G64410.1 (e_value=0.0) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc04g076780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59248010-59253947 transcript_region:SL2.40ch04:59248010..59253947- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00009696g0007.1 protein AED:0.05 eAED:0.05 QI:163|1|1|1|1|1|8|163|362; (*GB) gi|359475609|ref|XP_002263300.2| (e_value=2e-153) PREDICTED: uncharacterized protein LOC100259417 [Vitis vinifera];; (*TAIR) AT5G09580.1 (e_value=1e-143) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53345.1); Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2972639-2974438 FORWARD LENGTH=393;; (*ITAG) Solyc01g106190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85901976-85904733 transcript_region:SL2.40ch01:85901976..85904733+ functional_description:"Os11g0167200 protein (Fragment) (AHRD V1 *-*- Q0IUD3_ORYSJ)"; NbS00007412g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|356570816|ref|XP_003553580.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100808941 [Glycine max];; (*TAIR) AT3G10020.1 (e_value=1e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149;; (*ITAG) Solyc09g008980.1.1 (e_value=5e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2348996-2351852 transcript_region:SL2.40ch09:2348996..2351852+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007412g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|225441008|ref|XP_002283685.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100254632 [Vitis vinifera];; (*TAIR) AT3G10020.1 (e_value=1e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149;; (*ITAG) Solyc09g008970.1.1 (e_value=6e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:2346372-2346782 transcript_region:SL2.40ch09:2346372..2346782+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007412g0006.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|57013940|ref|YP_173413.1| (e_value=2e-59) hypothetical protein NitaMp069 [Nicotiana tabacum]; NbS00001643g0003.1 protein AED:0.26 eAED:0.26 QI:514|0.75|0.66|1|0.6|0.61|21|0|841; (*GB) gi|296085519|emb|CBI29251.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5W7F2|AGD3_ARATH (e_value=0.0) ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1;; (*TAIR) AT5G13300.1 (e_value=0.0) | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827;; (*ITAG) Solyc05g023750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29237545-29248578 transcript_region:SL2.40ch05:29237545..29248578+ go_terms:GO:0008060,GO:0005515 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--* AGAP3_HUMAN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0008060,GO:0005515 NbS00020335g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.25|1|1|4|0|102 NbS00008393g0006.1 protein AED:0.04 eAED:0.04 QI:0|0.85|0.75|0.87|1|1|8|662|207; (*GB) gi|350535416|ref|NP_001234705.1| (e_value=1e-118) calcium sensor calcineurin B-like [Solanum lycopersicum];; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=5e-104) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=5e-105) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc03g083320.2.1 (e_value=2e-121) genomic_reference:SL2.40ch03 gene_region:46697415-46700140 transcript_region:SL2.40ch03:46697415..46700140+ go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00041743g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|296088138|emb|CBI35559.3| (e_value=1e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=5e-69) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=4e-70) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc01g106160.1.1 (e_value=3e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85861185-85863347 transcript_region:SL2.40ch01:85861185..85863347- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00041743g0008.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|0|0|2|0|461; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=2e-51) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106140.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85856165-85857865 transcript_region:SL2.40ch01:85856165..85857865+ functional_description:"F-box protein family-like (AHRD V1 *-*- Q6ZCS3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00057858g0007.1 protein AED:0.02 eAED:0.02 QI:550|0.88|0.9|1|0.44|0.5|10|192|197; (*GB) gi|22331369|ref|NP_189382.2| (e_value=1e-81) SGF29 tudor-like domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT3G27460.1 (e_value=3e-84) | Symbols: | SGF29 tudor-like domain | chr3:10159537-10161994 REVERSE LENGTH=270;; (*ITAG) Solyc02g093490.2.1 (e_value=6e-119) genomic_reference:SL2.40ch02 gene_region:48924351-48928691 transcript_region:SL2.40ch02:48924351..48928691+ functional_description:"SAGA-associated factor 29 homolog (AHRD V1 ***- B5XG72_SALSA); contains Interpro domain(s) IPR010750 Protein of unknown function DUF1325 "; NbS00057858g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.5|1|1|1|4|183|224; (*GB) gi|224060151|ref|XP_002300062.1| (e_value=4e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LY84|GDL76_ARATH (e_value=3e-91) GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1;; (*TAIR) AT5G14450.1 (e_value=2e-92) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389;; (*ITAG) Solyc02g093500.2.1 (e_value=1e-112) genomic_reference:SL2.40ch02 gene_region:48928763-48930344 transcript_region:SL2.40ch02:48928763..48930344- go_terms:GO:0004560,GO:0004091 functional_description:"GDSL esterase/lipase At5g14450 (AHRD V1 ***- GDL76_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004560,GO:0004091 NbS00028917g0013.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|0.5|0.2|5|0|513; (*GB) gi|85068658|gb|ABC69409.1| (e_value=0.0) CYP71AT2v2 [Nicotiana tabacum];; (*SWP) sp|O65782|C83B1_ARATH (e_value=1e-134) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1;; (*TAIR) AT4G31500.1 (e_value=8e-136) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc09g092590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66963109-66964883 transcript_region:SL2.40ch09:66963109..66964883- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00028917g0011.1 protein AED:0.09 eAED:0.09 QI:154|0.75|0.8|1|0.5|0.8|5|200|932; (*GB) gi|84574832|dbj|BAE48657.1| (e_value=9e-80) hypothetical salt-inducible protein [Prunus mume];; (*TAIR) AT4G14200.1 (e_value=1e-21) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8185524-8188667 REVERSE LENGTH=784;; (*ITAG) Solyc09g092550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66946020-66951971 transcript_region:SL2.40ch09:66946020..66951971+ go_terms:GO:0005622 functional_description:"Hypothetical salt-inducible protein (Fragment) (AHRD V1 *-*- Q2Z1Z1_PRUMU)"; GO:0005622 NbS00028917g0012.1 protein AED:0.16 eAED:0.63 QI:0|0|0|1|0|0|4|0|224; (*GB) gi|85068660|gb|ABC69410.1| (e_value=2e-30) CYP71AT2v3 [Nicotiana tabacum];; (*TAIR) AT4G31500.1 (e_value=5e-12) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc09g092590.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66963109-66964883 transcript_region:SL2.40ch09:66963109..66964883- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00037109g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|343172702|gb|AEL99054.1| (e_value=6e-40) pre-mRNA-splicing factor, partial [Silene latifolia];; (*TAIR) AT5G37370.4 (e_value=2e-42) | Symbols: ATSRL1 | PRP38 family protein | chr5:14812845-14815823 REVERSE LENGTH=338;; (*ITAG) Solyc04g014560.2.1 (e_value=2e-52) genomic_reference:SL2.40ch04 gene_region:4825799-4832573 transcript_region:SL2.40ch04:4825799..4832573+ functional_description:"Pre-mRNA-splicing factor 38B (AHRD V1 *-*- C0HBS4_SALSA); contains Interpro domain(s) IPR005037 PRP38 "; NbS00033946g0010.1 protein AED:0.16 eAED:0.20 QI:0|0.4|0|1|0.4|0.16|6|0|298; (*GB) gi|255558196|ref|XP_002520125.1| (e_value=6e-76) AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9CAR3|KINGL_ARATH (e_value=6e-73) SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1;; (*TAIR) AT1G69800.1 (e_value=4e-74) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:26274416-26276105 REVERSE LENGTH=447;; (*ITAG) Solyc01g010700.2.1 (e_value=5e-93) genomic_reference:SL2.40ch01 gene_region:5726264-5728807 transcript_region:SL2.40ch01:5726264..5728807- functional_description:"AKIN gamma (AHRD V1 **-- B4FX20_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00033946g0003.1 protein AED:0.12 eAED:0.12 QI:464|0.71|0.87|1|1|1|8|270|787; (*GB) gi|224138008|ref|XP_002326495.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9S4|Y1143_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1;; (*TAIR) AT1G14390.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:4924277-4926794 FORWARD LENGTH=747;; (*ITAG) Solyc05g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1682919-1686805 transcript_region:SL2.40ch05:1682919..1686805- go_terms:GO:0004672 functional_description:"Receptor like kinase, RLK"; GO:0004672 NbS00011379g0014.1 protein AED:0.32 eAED:0.33 QI:0|1|0.75|1|1|1|4|334|341; (*GB) gi|350537047|ref|NP_001234789.1| (e_value=3e-164) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FUR2|IP5P2_ARATH (e_value=3e-106) Type I inositol 1,4,5-trisphosphate 5-phosphatase 2 OS=Arabidopsis thaliana GN=IP5P2 PE=1 SV=2;; (*TAIR) AT4G18010.2 (e_value=7e-111) | Symbols: IP5PII | myo-inositol polyphosphate 5-phosphatase 2 | chr4:9991194-9994099 REVERSE LENGTH=613;; (*ITAG) Solyc08g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1637048-1641994 transcript_region:SL2.40ch08:1637048..1641994- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00011379g0013.1 protein AED:0.36 eAED:0.37 QI:299|1|0.83|1|1|1|6|0|260; (*GB) gi|350537047|ref|NP_001234789.1| (e_value=9e-122) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FUR2|IP5P2_ARATH (e_value=6e-62) Type I inositol 1,4,5-trisphosphate 5-phosphatase 2 OS=Arabidopsis thaliana GN=IP5P2 PE=1 SV=2;; (*TAIR) AT4G18010.2 (e_value=3e-63) | Symbols: IP5PII | myo-inositol polyphosphate 5-phosphatase 2 | chr4:9991194-9994099 REVERSE LENGTH=613;; (*ITAG) Solyc08g007080.2.1 (e_value=8e-149) genomic_reference:SL2.40ch08 gene_region:1637048-1641994 transcript_region:SL2.40ch08:1637048..1641994- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00011379g0018.1 protein AED:0.20 eAED:0.21 QI:0|0.33|0.14|1|0.83|0.71|7|0|589; (*GB) gi|255557635|ref|XP_002519847.1| (e_value=0.0) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc08g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1629019-1634350 transcript_region:SL2.40ch08:1629019..1634350+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00006455g0015.1 protein AED:0.12 eAED:0.17 QI:0|1|0|1|0|0.5|2|0|185; (*ITAG) Solyc06g084340.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:45781883-45782967 transcript_region:SL2.40ch06:45781883..45782967- go_terms:GO:0030001 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00006455g0016.1 protein AED:0.44 eAED:0.54 QI:0|0.2|0.16|0.66|0.4|0.5|6|0|183; (*GB) gi|225436960|ref|XP_002276256.1| (e_value=2e-44) PREDICTED: probable glutathione peroxidase 4 [Vitis vinifera];; (*SWP) sp|Q9LYB4|GPX5_ARATH (e_value=3e-41) Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1;; (*TAIR) AT3G63080.1 (e_value=2e-42) | Symbols: ATGPX5, MEE42, GPX5 | glutathione peroxidase 5 | chr3:23310161-23311200 FORWARD LENGTH=173;; (*ITAG) Solyc09g064850.2.1 (e_value=4e-45) genomic_reference:SL2.40ch09 gene_region:57914680-57927124 transcript_region:SL2.40ch09:57914680..57927124+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9T4A6_RICCO); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00006455g0014.1 protein AED:0.16 eAED:0.16 QI:201|1|0.5|1|1|1|2|0|335; (*GB) gi|384081623|ref|NP_001244915.1| (e_value=3e-142) adenylate isopentenyltransferase [Solanum lycopersicum];; (*SWP) sp|Q93WC9|IPT3_ARATH (e_value=2e-107) Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1;; (*TAIR) AT3G63110.1 (e_value=1e-108) | Symbols: ATIPT3, IPT3 | isopentenyltransferase 3 | chr3:23318437-23319447 REVERSE LENGTH=336;; (*ITAG) Solyc09g064910.1.1 (e_value=7e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57998513-57999457 transcript_region:SL2.40ch09:57998513..57999457- go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- D7WPA4_9BACI); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00006455g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|14210079|gb|AAK56924.1|AF368237_1 (e_value=0.0) circadian clock coupling factor ZGT [Nicotiana tabacum];; (*SWP) sp|Q93ZT5|EDL3_ARATH (e_value=2e-107) EID1-like F-box protein 3 OS=Arabidopsis thaliana GN=EDL3 PE=2 SV=1;; (*TAIR) AT3G63060.1 (e_value=2e-108) | Symbols: EDL3 | EID1-like 3 | chr3:23300638-23301456 REVERSE LENGTH=272;; (*ITAG) Solyc06g084320.1.1 (e_value=1e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45776094-45776927 transcript_region:SL2.40ch06:45776094..45776927+ functional_description:"Circadian clock coupling factor ZGT (AHRD V1 ***- Q94FM9_TOBAC)"; NbS00006455g0017.1 protein AED:0.23 eAED:0.23 QI:31|0.5|0.33|1|1|1|3|136|191; (*GB) gi|326512220|dbj|BAJ96091.1| (e_value=4e-73) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT4G02900.1 (e_value=7e-78) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785;; (*ITAG) Solyc06g084330.2.1 (e_value=4e-94) genomic_reference:SL2.40ch06 gene_region:45777999-45781628 transcript_region:SL2.40ch06:45777999..45781628+ go_terms:GO:0016020 functional_description:"Hv711N16.16 (Fragment) (AHRD V1 *--- Q8LLC2_HORVU); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00013314g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.5|1|0.66|0.75|4|314|244; (*GB) gi|224078856|ref|XP_002305655.1| (e_value=7e-34) f-box family protein [Populus trichocarpa];; (*SWP) sp|O65416|SKI27_ARATH (e_value=2e-19) F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2;; (*TAIR) AT4G21510.1 (e_value=1e-20) | Symbols: | F-box family protein | chr4:11446193-11447025 REVERSE LENGTH=225;; (*ITAG) Solyc02g079150.1.1 (e_value=2e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38335362-38336037 transcript_region:SL2.40ch02:38335362..38336037- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005850g0004.1 protein AED:0.26 eAED:0.26 QI:103|1|1|1|0.9|0.90|11|351|353; (*GB) gi|82621156|gb|ABB86266.1| (e_value=0.0) putative RNA processing factor 1-like [Solanum tuberosum];; (*SWP) sp|Q5R631|RPF1_PONAB (e_value=3e-88) Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1;; (*TAIR) AT4G01560.1 (e_value=3e-162) | Symbols: MEE49 | Ribosomal RNA processing Brix domain protein | chr4:677266-679164 REVERSE LENGTH=343;; (*ITAG) Solyc11g066280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49092739-49098490 transcript_region:SL2.40ch11:49092739..49098490+ functional_description:"U3 small nucleolar ribonucleoprotein protein imp4 (AHRD V1 **-- Q17BF6_AEDAE); contains Interpro domain(s) IPR007109 Brix domain "; NbS00049267g0007.1 protein AED:0.20 eAED:0.25 QI:0|0.93|0.8|1|0.93|0.9|30|0|1011; (*GB) gi|224053881|ref|XP_002298026.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P04825|AMPN_ECOLI (e_value=0.0) Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2;; (*TAIR) AT1G63770.5 (e_value=0.0) | Symbols: | Peptidase M1 family protein | chr1:23657791-23664243 REVERSE LENGTH=1013;; (*ITAG) Solyc08g081250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61469375-61478079 transcript_region:SL2.40ch08:61469375..61478079- go_terms:GO:0004222 functional_description:"Aminopeptidase N (AHRD V1 ***- D5C0C8_NITHN); contains Interpro domain(s) IPR012779 Peptidase M1, alanyl aminopeptidase "; GO:0004222 NbS00040399g0004.1 protein AED:0.22 eAED:0.22 QI:257|1|1|1|1|1|5|0|457; (*GB) gi|225431667|ref|XP_002263740.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 7 [Vitis vinifera];; (*SWP) sp|Q9FN02|PPP7_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1;; (*TAIR) AT5G63870.1 (e_value=0.0) | Symbols: PP7, ATPP7 | serine/threonine phosphatase 7 | chr5:25561336-25562908 REVERSE LENGTH=413;; (*ITAG) Solyc02g082230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40502105-40508058 transcript_region:SL2.40ch02:40502105..40508058- go_terms:GO:0019904 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 ***- D7MQI5_ARALY); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0019904 NbS00009414g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|224146144|ref|XP_002325896.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFD2|RGP5_ARATH (e_value=0.0) Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1;; (*TAIR) AT5G16510.2 (e_value=0.0) | Symbols: | Alpha-1,4-glucan-protein synthase family protein | chr5:5393296-5394342 FORWARD LENGTH=348;; (*ITAG) Solyc04g051200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49214648-49215694 transcript_region:SL2.40ch04:49214648..49215694- go_terms:GO:0030054 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-- B9RFU2_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0030054 NbS00009414g0003.1 protein AED:0.47 eAED:0.72 QI:0|0.5|0.33|1|0|0|3|43|66; (*GB) gi|224146148|ref|XP_002325897.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT4G30390.1 (e_value=2e-20) | Symbols: | unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14862224-14862906 REVERSE LENGTH=95; NbS00041750g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|0.5|1|1|2|405|92; (*GB) gi|255581829|ref|XP_002531715.1| (e_value=8e-20) Cytochrome c oxidase copper chaperone, putative [Ricinus communis];; (*TAIR) AT3G15352.1 (e_value=7e-20) | Symbols: ATCOX17, COX17 | cytochrome c oxidase 17 | chr3:5180266-5180490 FORWARD LENGTH=74;; (*ITAG) Solyc10g007010.1.1 (e_value=7e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1412466-1412705 transcript_region:SL2.40ch10:1412466..1412705- go_terms:GO:0016531 functional_description:"Cytochrome c oxidase copper chaperone family protein (AHRD V1 **** D7KKD3_ARALY); contains Interpro domain(s) IPR007745 Cytochrome c oxidase copper chaperone "; GO:0016531 NbS00009351g0002.1 protein AED:0.08 eAED:0.09 QI:0|0|0.33|1|1|1|3|0|409; (*GB) gi|255578108|ref|XP_002529924.1| (e_value=1e-124) Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=5e-53) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=3e-112) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g064820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64029373-64030845 transcript_region:SL2.40ch07:64029373..64030845- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00026556g0002.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.16|1|1|6|0|256; (*GB) gi|147775279|emb|CAN61591.1| (e_value=6e-107) hypothetical protein VITISV_030553 [Vitis vinifera];; (*SWP) sp|O33513|CBBY_RHOCA (e_value=9e-13) Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1;; (*TAIR) AT1G56500.1 (e_value=8e-94) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055;; (*ITAG) Solyc01g100650.2.1 (e_value=5e-126) genomic_reference:SL2.40ch01 gene_region:82378816-82399452 transcript_region:SL2.40ch01:82378816..82399452+ go_terms:GO:0016787,GO:0008152,GO:0016491,GO:0045454 functional_description:"NHL repeat containing 2 (AHRD V1 *--- B2RR26_MOUSE); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; GO:0016787,GO:0008152,GO:0016491,GO:0045454 NbS00039210g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|117; (*GB) gi|12003402|gb|AAG43558.1|AF211540_1 (e_value=7e-33) Avr9/Cf-9 rapidly elicited protein 75 [Nicotiana tabacum];; (*ITAG) Solyc11g010250.1.1 (e_value=4e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3317088-3317513 transcript_region:SL2.40ch11:3317088..3317513- functional_description:"Avr9/Cf-9 rapidly elicited protein 75 (AHRD V1 ***- Q9FQY9_TOBAC)"; NbS00024684g0009.1 protein AED:0.07 eAED:0.07 QI:89|1|1|1|0.5|0.66|3|503|228; (*GB) gi|255570730|ref|XP_002526319.1| (e_value=6e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G32605.1 (e_value=1e-75) | Symbols: | Mitochondrial glycoprotein family protein | chr4:15726429-15727864 REVERSE LENGTH=227;; (*ITAG) Solyc11g006400.1.1 (e_value=1e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1102223-1106554 transcript_region:SL2.40ch11:1102223..1106554+ go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein (AHRD V1 ***- B6TJH8_MAIZE); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00024684g0008.1 protein AED:0.12 eAED:0.12 QI:49|0.8|0.90|1|0.9|0.90|11|0|1391; (*GB) gi|356577518|ref|XP_003556871.1| (e_value=1e-65) PREDICTED: uncharacterized protein LOC100818785 [Glycine max];; (*TAIR) AT3G10650.1 (e_value=5e-50) | Symbols: | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309;; (*ITAG) Solyc11g006390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1091517-1101108 transcript_region:SL2.40ch11:1091517..1101108+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043855g0003.1 protein AED:0.18 eAED:0.18 QI:186|1|1|1|0.66|0.5|4|384|322; (*GB) gi|296084921|emb|CBI28330.3| (e_value=4e-136) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=4e-125) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3702854-3706348 transcript_region:SL2.40ch01:3702854..3706348- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00009426g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.14|1|0.16|0.14|7|0|276; (*GB) gi|224130726|ref|XP_002320912.1| (e_value=3e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-29) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G30340.1 (e_value=3e-79) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:11956626-11958969 FORWARD LENGTH=364;; (*ITAG) Solyc04g007590.1.1 (e_value=3e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1271481-1274405 transcript_region:SL2.40ch04:1271481..1274405- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9LI65_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00009426g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.2|0.8|1|1|5|343|125; (*GB) gi|224108361|ref|XP_002314821.1| (e_value=4e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PGU2|MAF1_DANRE (e_value=2e-16) Repressor of RNA polymerase III transcription MAF1 homolog OS=Danio rerio GN=maf1 PE=2 SV=1;; (*TAIR) AT5G13240.1 (e_value=8e-43) | Symbols: | transcription regulators | chr5:4225261-4227152 REVERSE LENGTH=224;; (*ITAG) Solyc05g008400.2.1 (e_value=6e-61) genomic_reference:SL2.40ch05 gene_region:2769541-2773239 transcript_region:SL2.40ch05:2769541..2773239+ go_terms:GO:0016564 functional_description:"Repressor of RNA polymerase III transcription MAF1 (AHRD V1 **** B6TPC2_MAIZE); contains Interpro domain(s) IPR017152 RNA polymerase III transcriptional repressor, MAF1 "; GO:0016564 NbS00013709g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|1|1|6|0|783; (*GB) gi|224131914|ref|XP_002328139.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VWN6|RFS_PEA (e_value=0.0) Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1;; (*TAIR) AT5G40390.1 (e_value=0.0) | Symbols: SIP1 | Raffinose synthase family protein | chr5:16161720-16165085 FORWARD LENGTH=783;; (*ITAG) Solyc02g086530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43775103-43779306 transcript_region:SL2.40ch02:43775103..43779306- go_terms:GO:0047274 functional_description:"Alpha-galactosidase (AHRD V1 **-- C0NUM4_AJECG); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0047274 NbS00026819g0004.1 protein AED:0.03 eAED:0.03 QI:78|0|0|1|1|1|2|0|477; (*GB) gi|255574554|ref|XP_002528188.1| (e_value=5e-124) ran-binding protein, putative [Ricinus communis];; (*SWP) sp|Q7Z3J3|RGPD4_HUMAN (e_value=1e-11) RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=3;; (*TAIR) AT3G15970.1 (e_value=7e-103) | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr3:5408982-5410379 REVERSE LENGTH=465;; (*ITAG) Solyc06g066740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38323238-38324590 transcript_region:SL2.40ch06:38323238..38324590+ go_terms:GO:0005643,GO:0046907 functional_description:"Ran binding protein 3 (AHRD V1 *-*- Q6IP83_XENLA); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0005643,GO:0046907 NbS00026819g0005.1 protein AED:0.15 eAED:0.25 QI:80|0|0.5|1|0|0|2|0|128; (*ITAG) Solyc06g066750.2.1 (e_value=7e-38) genomic_reference:SL2.40ch06 gene_region:38325638-38326574 transcript_region:SL2.40ch06:38325638..38326574- functional_description:"Unknown Protein (AHRD V1)"; NbS00023366g0004.1 protein AED:0.25 eAED:0.25 QI:143|0.66|0.75|1|1|1|4|293|178; (*GB) gi|359495479|ref|XP_003635000.1| (e_value=8e-24) PREDICTED: uncharacterized protein LOC100256799 [Vitis vinifera];; (*ITAG) Solyc10g009200.2.1 (e_value=5e-41) genomic_reference:SL2.40ch10 gene_region:3196501-3199644 transcript_region:SL2.40ch10:3196501..3199644+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019186 Nucleolar protein 12 "; NbS00026003g0003.1 protein AED:0.18 eAED:0.18 QI:213|1|1|1|0|0.33|3|194|181; (*GB) gi|224119774|ref|XP_002318159.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|B9I3X5|CSPL3_POPTR (e_value=8e-48) CASP-like protein POPTRDRAFT_823430 OS=Populus trichocarpa GN=POPTRDRAFT_823430 PE=3 SV=1;; (*TAIR) AT4G25040.1 (e_value=1e-21) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:12868320-12869319 FORWARD LENGTH=170;; (*ITAG) Solyc06g072550.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:41136237-41138675 transcript_region:SL2.40ch06:41136237..41138675- functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00014458g0005.1 protein AED:0.28 eAED:0.28 QI:103|1|1|1|0.8|0.81|11|452|406; (*GB) gi|2653879|gb|AAB87670.1| (e_value=0.0) adenyl cyclase [Nicotiana tabacum];; (*TAIR) AT3G21465.1 (e_value=3e-141) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7560750-7563202 FORWARD LENGTH=388;; (*ITAG) Solyc07g041930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00016215g0020.1 protein AED:0.31 eAED:0.31 QI:0|1|0.75|1|0.33|0.5|4|171|136; (*GB) gi|255554529|ref|XP_002518303.1| (e_value=3e-58) Palmitoyltransferase TIP1, putative [Ricinus communis];; (*SWP) sp|Q3EC11|ZDHC2_ARATH (e_value=3e-48) Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2;; (*TAIR) AT2G14255.1 (e_value=3e-49) | Symbols: | Ankyrin repeat family protein with DHHC zinc finger domain | chr2:6036974-6040892 FORWARD LENGTH=536;; (*ITAG) Solyc01g106440.2.1 (e_value=1e-81) genomic_reference:SL2.40ch01 gene_region:86093522-86101805 transcript_region:SL2.40ch01:86093522..86101805+ go_terms:GO:0019706 functional_description:"Ankyrin repeat-containing protein-like (AHRD V1 **-- Q67WP3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0019706 NbS00016215g0024.1 protein AED:0.33 eAED:0.33 QI:0|0.78|0.8|1|0.64|0.66|15|346|479; (*GB) gi|255554517|ref|XP_002518297.1| (e_value=0.0) transporter, putative [Ricinus communis];; (*SWP) sp|Q9FLG8|SPNS2_ARATH (e_value=0.0) Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1;; (*TAIR) AT5G64500.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25780511-25783474 FORWARD LENGTH=484;; (*ITAG) Solyc01g106420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86077595-86088101 transcript_region:SL2.40ch01:86077595..86088101+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 **-- Q39GH8_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00016215g0011.1 protein AED:0.32 eAED:0.38 QI:403|0.4|0.5|1|0.8|0.83|6|0|170; (*ITAG) Solyc01g091260.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:76682184-76686338 transcript_region:SL2.40ch01:76682184..76686338- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00016215g0028.1 protein AED:0.31 eAED:0.38 QI:0|0.42|0.5|1|0.42|0.25|8|0|312; (*GB) gi|255554529|ref|XP_002518303.1| (e_value=6e-120) Palmitoyltransferase TIP1, putative [Ricinus communis];; (*SWP) sp|Q3EC11|ZDHC2_ARATH (e_value=4e-91) Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2;; (*TAIR) AT2G14255.1 (e_value=3e-92) | Symbols: | Ankyrin repeat family protein with DHHC zinc finger domain | chr2:6036974-6040892 FORWARD LENGTH=536;; (*ITAG) Solyc01g106440.2.1 (e_value=1e-165) genomic_reference:SL2.40ch01 gene_region:86093522-86101805 transcript_region:SL2.40ch01:86093522..86101805+ go_terms:GO:0019706 functional_description:"Ankyrin repeat-containing protein-like (AHRD V1 **-- Q67WP3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0019706 NbS00016215g0012.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.4|1|1|5|0|211; (*GB) gi|356510059|ref|XP_003523758.1| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100783686 [Glycine max];; (*TAIR) AT5G11700.1 (e_value=2e-28) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1419;; (*ITAG) Solyc08g065980.2.1 (e_value=2e-42) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00016215g0023.1 protein AED:0.12 eAED:0.12 QI:335|1|1|1|1|1|5|339|321; (*GB) gi|77999796|gb|ABB17078.1| (e_value=0.0) L-galactose dehydrogenase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q04212|ARA2_YEAST (e_value=1e-33) D-arabinose 1-dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARA2 PE=1 SV=1;; (*TAIR) AT4G33670.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr4:16169670-16171446 REVERSE LENGTH=319;; (*ITAG) Solyc01g106450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86101970-86105020 transcript_region:SL2.40ch01:86101970..86105020- go_terms:GO:0010349 functional_description:"L-galactose dehydrogenase (AHRD V1 **-* Q07A10_NICLS); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0010349 NbS00016215g0013.1 protein AED:0.30 eAED:0.35 QI:0|0.57|0.5|1|1|1|8|0|446; (*GB) gi|224056325|ref|XP_002298803.1| (e_value=1e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXC9|IPYR1_ARATH (e_value=1e-156) Soluble inorganic pyrophosphatase 1, chloroplastic OS=Arabidopsis thaliana GN=PPA1 PE=1 SV=1;; (*TAIR) AT5G09650.1 (e_value=9e-158) | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr5:2991331-2993117 REVERSE LENGTH=300;; (*ITAG) Solyc01g106430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86088310-86092110 transcript_region:SL2.40ch01:86088310..86092110- go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase family protein (AHRD V1 **** D7M262_ARALY); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00026000g0006.1 protein AED:0.33 eAED:0.34 QI:39|0.85|0.75|1|0.85|1|8|0|293; (*GB) gi|255561389|ref|XP_002521705.1| (e_value=4e-98) poly(A) polymerase, putative [Ricinus communis];; (*TAIR) AT2G17580.1 (e_value=3e-83) | Symbols: | Polynucleotide adenylyltransferase family protein | chr2:7646507-7650066 FORWARD LENGTH=757;; (*ITAG) Solyc02g082810.2.1 (e_value=7e-161) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00026000g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|276; (*ITAG) Solyc02g082810.2.1 (e_value=1e-77) genomic_reference:SL2.40ch02 gene_region:41034299-41044992 transcript_region:SL2.40ch02:41034299..41044992+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAHJ); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00032471g0002.1 protein AED:0.39 eAED:0.39 QI:39|0|0.5|0.5|1|0.5|2|54|88; (*GB) gi|297738096|emb|CBI27297.3| (e_value=3e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G60980.1 (e_value=2e-19) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:24543988-24546027 FORWARD LENGTH=459;; (*ITAG) Solyc02g088920.2.1 (e_value=3e-29) genomic_reference:SL2.40ch02 gene_region:45419814-45424121 transcript_region:SL2.40ch02:45419814..45424121- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00009157g0004.1 protein AED:0.02 eAED:0.02 QI:149|1|0.81|1|0.5|0.54|11|492|1993; (*GB) gi|225461935|ref|XP_002265993.1| (e_value=2e-62) PREDICTED: uncharacterized protein LOC100241254 [Vitis vinifera];; (*TAIR) AT5G55820.1 (e_value=6e-29) | Symbols: | CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22586287-22594035 FORWARD LENGTH=1826;; (*ITAG) Solyc07g065600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64517382-64527961 transcript_region:SL2.40ch07:64517382..64527961+ functional_description:"Genomic DNA chromosome 5 P1 clone MDF20 (AHRD V1 *-*- Q9FM57_ARATH)"; NbS00042829g0001.1 protein AED:0.37 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|80; (*ITAG) Solyc01g100100.2.1 (e_value=8e-15) genomic_reference:SL2.40ch01 gene_region:81945457-81946029 transcript_region:SL2.40ch01:81945457..81946029- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- B8M8P5_TALSN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008356g0008.1 protein AED:0.10 eAED:0.10 QI:153|0.8|0.83|1|1|1|6|199|326; (*GB) gi|225449647|ref|XP_002262699.1| (e_value=5e-146) PREDICTED: bark storage protein A [Vitis vinifera];; (*SWP) sp|Q07469|BSPA_POPDE (e_value=2e-52) Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1;; (*TAIR) AT4G24350.1 (e_value=4e-134) | Symbols: | Phosphorylase superfamily protein | chr4:12609637-12611328 FORWARD LENGTH=336;; (*ITAG) Solyc11g007730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1965559-1968416 transcript_region:SL2.40ch11:1965559..1968416- go_terms:GO:0009116 functional_description:"MTA/SAH nucleosidase / phosphatase (AHRD V1 *-*- C3G449_BACTU); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0009116 NbS00010704g0106.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.5|0.83|0.8|0.83|6|444|356 NbS00002080g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|255546587|ref|XP_002514353.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g067580.1.1 (e_value=3e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:53786829-53787188 transcript_region:SL2.40ch08:53786829..53787188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009788g0003.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|224064147|ref|XP_002301392.1| (e_value=5e-59) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01140.1 (e_value=2e-31) | Symbols: | Protein of unknown function (DUF1191) | chr4:491012-491932 REVERSE LENGTH=306;; (*ITAG) Solyc01g095440.2.1 (e_value=9e-99) genomic_reference:SL2.40ch01 gene_region:78447430-78448513 transcript_region:SL2.40ch01:78447430..78448513+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00009788g0009.1 protein AED:0.08 eAED:0.08 QI:18|1|0.8|1|1|1|5|99|363; (*GB) gi|358249128|ref|NP_001240253.1| (e_value=2e-165) uncharacterized protein LOC100780915 precursor [Glycine max];; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=2e-135) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=1e-136) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc01g095450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78449856-78452248 transcript_region:SL2.40ch01:78449856..78452248- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00009788g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|277; (*GB) gi|225454424|ref|XP_002280136.1| (e_value=5e-84) PREDICTED: uncharacterized protein LOC100258561 [Vitis vinifera];; (*TAIR) AT4G05400.2 (e_value=5e-67) | Symbols: | copper ion binding | chr4:2741256-2742008 FORWARD LENGTH=250;; (*ITAG) Solyc01g095420.2.1 (e_value=7e-137) genomic_reference:SL2.40ch01 gene_region:78437977-78440511 transcript_region:SL2.40ch01:78437977..78440511- go_terms:GO:0005507 functional_description:"Unknown Protein (AHRD V1)"; GO:0005507 NbS00009788g0010.1 protein AED:0.28 eAED:0.31 QI:0|1|0.5|1|1|1|4|0|147; (*GB) gi|388500696|gb|AFK38414.1| (e_value=4e-50) unknown [Lotus japonicus];; (*SWP) sp|O04616|Y4115_ARATH (e_value=1e-45) Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1;; (*TAIR) AT4G01150.1 (e_value=1e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164;; (*ITAG) Solyc01g095430.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:78441004-78444296 transcript_region:SL2.40ch01:78441004..78444296- functional_description:"Threonine endopeptidase (AHRD V1 **-- B6TCN7_MAIZE)"; NbS00003511g0010.1 protein AED:0.07 eAED:0.08 QI:161|0.83|0.57|1|0.66|0.71|7|0|687; (*GB) gi|359490397|ref|XP_002279420.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera];; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc03g026120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7910298-7913304 transcript_region:SL2.40ch03:7910298..7913304- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00003511g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0.5|1|1|0.5|2|345|407; (*GB) gi|255544572|ref|XP_002513347.1| (e_value=4e-135) (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis];; (*SWP) sp|O64899|C80B1_ESCCA (e_value=5e-88) (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=5e-79) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc03g026140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7927193-7928936 transcript_region:SL2.40ch03:7927193..7928936- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003511g0105.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|134 NbS00003511g0115.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|0.75|0.6|5|0|495 NbS00003511g0118.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|88 NbS00003511g0116.1 protein AED:0.08 eAED:0.08 QI:11|1|1|1|0.75|0.8|5|126|320 NbS00011271g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.83|1|1|1|6|266|421; (*GB) gi|225444875|ref|XP_002279373.1| (e_value=2e-151) PREDICTED: uncharacterized protein LOC100256072 [Vitis vinifera];; (*TAIR) AT5G57010.1 (e_value=1e-143) | Symbols: | calmodulin-binding family protein | chr5:23068207-23070203 FORWARD LENGTH=495;; (*ITAG) Solyc07g040710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46741652-46743922 transcript_region:SL2.40ch07:46741652..46743922+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** A2I5F3_BETVU)"; GO:0005516 NbS00022089g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|0.75|1|1|1|8|0|368; (*GB) gi|359487547|ref|XP_002277687.2| (e_value=8e-171) PREDICTED: uncharacterized protein LOC100244357 [Vitis vinifera];; (*TAIR) AT3G62370.1 (e_value=1e-154) | Symbols: | heme binding | chr3:23080789-23083234 FORWARD LENGTH=361;; (*ITAG) Solyc01g100590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82330045-82336272 transcript_region:SL2.40ch01:82330045..82336272- go_terms:GO:0055114 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019020 Cytochrome c-552/DMSO reductase-like, haem-binding domain "; GO:0055114 NbS00042061g0001.1 protein AED:0.13 eAED:0.13 QI:378|1|0.5|1|0|0|2|0|338; (*GB) gi|225442186|ref|XP_002276676.1| (e_value=3e-179) PREDICTED: solute carrier family 25 member 44-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RD67|S2544_PONAB (e_value=4e-31) Solute carrier family 25 member 44 OS=Pongo abelii GN=SLC25A44 PE=2 SV=2;; (*TAIR) AT1G72820.1 (e_value=1e-168) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27403457-27404506 FORWARD LENGTH=349;; (*ITAG) Solyc03g121920.2.1 (e_value=4e-164) genomic_reference:SL2.40ch03 gene_region:63981706-63985166 transcript_region:SL2.40ch03:63981706..63985166+ go_terms:GO:0022857 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0022857 NbS00042061g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.8|1|1|1|5|40|263; (*GB) gi|255550121|ref|XP_002516111.1| (e_value=6e-110) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=7e-98) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=6e-99) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc12g096040.1.1 (e_value=4e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63453325-63461014 transcript_region:SL2.40ch12:63453325..63461014- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00046802g0016.1 protein AED:0.32 eAED:0.33 QI:452|0.9|0.81|1|0.8|0.72|11|0|173; (*GB) gi|297746174|emb|CBI16230.3| (e_value=1e-65) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2W2|GSTL2_ARATH (e_value=6e-56) Glutathione S-transferase L2, chloroplastic OS=Arabidopsis thaliana GN=GSTL2 PE=2 SV=1;; (*TAIR) AT3G55040.1 (e_value=4e-57) | Symbols: GSTL2 | glutathione transferase lambda 2 | chr3:20398718-20400305 REVERSE LENGTH=292;; (*ITAG) Solyc04g009530.2.1 (e_value=1e-87) genomic_reference:SL2.40ch04 gene_region:2943884-2949090 transcript_region:SL2.40ch04:2943884..2949090- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** B3TLW0_ELAGV); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00046802g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|0|0|2|296|227; (*GB) gi|75223179|sp|O80362.1|RK10_TOBAC (e_value=1e-161) RecName: Full=50S ribosomal protein L10, chloroplastic; AltName: Full=CL10; Flags: Precursor;; (*SWP) sp|O80362|RK10_TOBAC (e_value=4e-163) 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1;; (*TAIR) AT5G13510.1 (e_value=2e-102) | Symbols: | Ribosomal protein L10 family protein | chr5:4341294-4341956 FORWARD LENGTH=220;; (*ITAG) Solyc04g009540.1.1 (e_value=1e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2950915-2951604 transcript_region:SL2.40ch04:2950915..2951604+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L10 (AHRD V1 ***- B6SUJ0_MAIZE); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0003735,GO:0005515 NbS00046802g0022.1 protein AED:0.21 eAED:0.24 QI:0|0.61|0.64|1|0.46|0.57|14|619|827; (*GB) gi|356542573|ref|XP_003539741.1| (e_value=5e-114) PREDICTED: uncharacterized protein LOC100801880 [Glycine max];; (*SWP) sp|P34909|NOT4_YEAST (e_value=7e-44) General negative regulator of transcription subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT2 PE=1 SV=1;; (*TAIR) AT3G45630.1 (e_value=6e-108) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc04g009510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2930038-2938296 transcript_region:SL2.40ch04:2930038..2938296+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00046802g0024.1 protein AED:0.26 eAED:0.29 QI:0|0.53|0.42|1|0.69|0.78|14|0|828; (*GB) gi|24461867|gb|AAN62354.1|AF506028_23 (e_value=3e-164) CTV.22 [Citrus trifoliata];; (*TAIR) AT1G15780.1 (e_value=9e-125) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335;; (*ITAG) Solyc04g009500.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:2915852-2927412 transcript_region:SL2.40ch04:2915852..2927412+ go_terms:GO:0006355 functional_description:"CTV.22 (AHRD V1 *-*- Q8H6Q7_PONTR); contains Interpro domain(s) IPR003101 Coactivator CBP, KIX "; GO:0006355 NbS00046802g0015.1 protein AED:0.30 eAED:0.49 QI:0|0|0|1|1|1|3|0|187; (*GB) gi|359479961|ref|XP_002271627.2| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100243428 [Vitis vinifera];; (*TAIR) AT1G26540.1 (e_value=1e-24) | Symbols: | Agenet domain-containing protein | chr1:9167783-9170795 REVERSE LENGTH=695;; (*ITAG) Solyc01g079230.2.1 (e_value=8e-48) genomic_reference:SL2.40ch01 gene_region:70832208-70839060 transcript_region:SL2.40ch01:70832208..70839060+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KQP5_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00037841g0001.1 protein AED:0.03 eAED:0.03 QI:155|0|0.5|1|0|0.5|2|385|236; (*GB) gi|225454522|ref|XP_002277387.1| (e_value=8e-47) PREDICTED: putative RING-H2 finger protein ATL21A [Vitis vinifera];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=3e-27) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT2G46495.1 (e_value=2e-28) | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372;; (*ITAG) Solyc01g095860.2.1 (e_value=3e-94) genomic_reference:SL2.40ch01 gene_region:78763812-78765778 transcript_region:SL2.40ch01:78763812..78765778- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00037841g0011.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|313; (*GB) gi|225454522|ref|XP_002277387.1| (e_value=5e-116) PREDICTED: putative RING-H2 finger protein ATL21A [Vitis vinifera];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=3e-89) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT2G46495.1 (e_value=3e-90) | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372;; (*ITAG) Solyc01g095830.2.1 (e_value=2e-179) genomic_reference:SL2.40ch01 gene_region:78753204-78754957 transcript_region:SL2.40ch01:78753204..78754957- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00037841g0003.1 protein AED:0.30 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|170; (*GB) gi|255764587|gb|ACU33853.1| (e_value=7e-66) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9CAM8|PP100_ARATH (e_value=5e-33) Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1;; (*TAIR) AT1G63150.1 (e_value=4e-34) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23419399-23421288 FORWARD LENGTH=629;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00044548g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|0|493; (*GB) gi|62241065|dbj|BAD93689.1| (e_value=0.0) glycosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9SK82|U85A1_ARATH (e_value=0.0) UDP-glycosyltransferase 85A1 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1;; (*TAIR) AT1G22400.1 (e_value=0.0) | Symbols: UGT85A1, ATUGT85A1 | UDP-Glycosyltransferase superfamily protein | chr1:7903851-7906607 REVERSE LENGTH=489;; (*ITAG) Solyc12g057060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48483142-48484774 transcript_region:SL2.40ch12:48483142..48484774- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-- Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00061515g0003.1 protein AED:0.27 eAED:0.40 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|255550325|ref|XP_002516213.1| (e_value=4e-22) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g042490.1.1 (e_value=1e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:53019216-53019608 transcript_region:SL2.40ch07:53019216..53019608- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 ***- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00015387g0001.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|193527448|gb|ACF19789.1| (e_value=2e-18) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=1e-51) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00005655g0009.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|378; (*GB) gi|297738233|emb|CBI27434.3| (e_value=6e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-30) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-31) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011230.1.1 (e_value=4e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005655g0103.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|97 NbS00005655g0111.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|151 NbS00005655g0115.1 protein AED:0.11 eAED:0.11 QI:237|0.8|0.66|1|0.6|0.5|6|227|587 NbS00005655g0116.1 protein AED:0.22 eAED:0.28 QI:0|0|0|1|0|0|2|0|162 NbS00002032g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|255565874|ref|XP_002523926.1| (e_value=2e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16195.1 (e_value=2e-13) | Symbols: | Plant self-incompatibility protein S1 family | chr4:9173165-9173650 REVERSE LENGTH=161;; (*ITAG) Solyc09g011100.1.1 (e_value=2e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4428078-4428527 transcript_region:SL2.40ch09:4428078..4428527+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 -**- C7FE99_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00030431g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|224091659|ref|XP_002309319.1| (e_value=4e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46490.1 (e_value=2e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19079457-19079861 FORWARD LENGTH=134;; (*ITAG) Solyc12g010400.1.1 (e_value=6e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3450364-3451368 transcript_region:SL2.40ch12:3450364..3451368+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030431g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|725; (*GB) gi|255565099|ref|XP_002523542.1| (e_value=0.0) Endosomal P24A protein precursor, putative [Ricinus communis];; (*SWP) sp|Q8BH24|TM9S4_MOUSE (e_value=1e-148) Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT5G35160.2 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658;; (*ITAG) Solyc12g010390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3440122-3442095 transcript_region:SL2.40ch12:3440122..3442095- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 **** B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00030431g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.94|0.84|1|0.83|0.84|19|138|692; (*GB) gi|359484753|ref|XP_002264815.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256872 [Vitis vinifera];; (*SWP) sp|Q9FIJ7|KADC2_ARATH (e_value=1e-85) Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1;; (*TAIR) AT5G35170.1 (e_value=0.0) | Symbols: | adenylate kinase family protein | chr5:13419278-13423482 FORWARD LENGTH=588;; (*ITAG) Solyc12g010380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3429721-3438938 transcript_region:SL2.40ch12:3429721..3438938- go_terms:GO:0004017,GO:0006139 functional_description:"Adenylate kinase-like protein (AHRD V1 ***- Q8VYL1_ARATH); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; GO:0004017,GO:0006139 NbS00013502g0021.1 protein AED:0.01 eAED:0.01 QI:516|1|1|1|1|0.8|5|316|941; (*GB) gi|225426014|ref|XP_002271107.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243335 [Vitis vinifera];; (*TAIR) AT2G46380.1 (e_value=1e-93) | Symbols: | Protein of unknown function (DUF3133) | chr2:19039377-19042171 FORWARD LENGTH=768;; (*ITAG) Solyc08g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62121368-62126730 transcript_region:SL2.40ch08:62121368..62126730+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00013502g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|90; (*ITAG) Solyc08g082030.2.1 (e_value=2e-22) genomic_reference:SL2.40ch08 gene_region:62113512-62114610 transcript_region:SL2.40ch08:62113512..62114610+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013502g0013.1 protein AED:0.17 eAED:0.17 QI:0|1|0.8|1|1|1|5|0|251; (*GB) gi|225426010|ref|XP_002273198.1| (e_value=1e-62) PREDICTED: high mobility group B protein 13-like [Vitis vinifera];; (*SWP) sp|Q9SUP7|HMGB6_ARATH (e_value=5e-51) High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6 PE=2 SV=1;; (*TAIR) AT4G23800.2 (e_value=2e-52) | Symbols: | HMG (high mobility group) box protein | chr4:12390228-12392516 FORWARD LENGTH=450;; (*ITAG) Solyc08g082070.2.1 (e_value=7e-80) genomic_reference:SL2.40ch08 gene_region:62136850-62139918 transcript_region:SL2.40ch08:62136850..62139918+ go_terms:GO:0005634 functional_description:"TOX high mobility group box family member 4 (AHRD V1 *--- TOX4_PONAB); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0005634 NbS00013502g0014.1 protein AED:0.18 eAED:0.18 QI:267|1|1|1|1|1|3|382|433; (*GB) gi|225426012|ref|XP_002273303.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265666 [Vitis vinifera];; (*TAIR) AT4G11090.1 (e_value=3e-172) | Symbols: TBL23 | TRICHOME BIREFRINGENCE-LIKE 23 | chr4:6764645-6766221 REVERSE LENGTH=432;; (*ITAG) Solyc08g082060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62131773-62136414 transcript_region:SL2.40ch08:62131773..62136414+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00013502g0020.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.5|0.33|3|0|182; (*GB) gi|357517375|ref|XP_003628976.1| (e_value=7e-51) UBX domain-containing protein [Medicago truncatula];; (*SWP) sp|Q6P5G6|UBXN7_MOUSE (e_value=2e-20) UBX domain-containing protein 7 OS=Mus musculus GN=Ubxn7 PE=1 SV=2;; (*TAIR) AT1G14570.4 (e_value=8e-32) | Symbols: | UBX domain-containing protein | chr1:4983770-4987192 FORWARD LENGTH=447;; (*ITAG) Solyc04g008510.2.1 (e_value=2e-67) genomic_reference:SL2.40ch04 gene_region:2133538-2142268 transcript_region:SL2.40ch04:2133538..2142268+ functional_description:"UBX domain-containing protein (AHRD V1 ***- D7KBM2_ARALY); contains Interpro domain(s) IPR006577 UAS "; NbS00013502g0018.1 protein AED:0.38 eAED:0.61 QI:0|0|0|1|1|1|2|0|91; (*ITAG) Solyc08g082070.2.1 (e_value=6e-15) genomic_reference:SL2.40ch08 gene_region:62136850-62139918 transcript_region:SL2.40ch08:62136850..62139918+ go_terms:GO:0005634 functional_description:"TOX high mobility group box family member 4 (AHRD V1 *--- TOX4_PONAB); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0005634 NbS00022882g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.71|0.5|0.75|0.85|1|8|0|613; (*GB) gi|302144182|emb|CBI23309.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VDM6|HNRL1_MOUSE (e_value=8e-65) Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus musculus GN=Hnrnpul1 PE=1 SV=1;; (*ITAG) Solyc02g079140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38325262-38330901 transcript_region:SL2.40ch02:38325262..38330901- functional_description:"Heterogeneous nuclear ribonucleoprotein U-like protein 1 (AHRD V1 *-*- B6UCI9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; NbS00022882g0007.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|68 NbS00019798g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|1|0.66|0.5|4|0|323; (*GB) gi|340501186|gb|EGR27996.1| (e_value=0.0) hypothetical protein IMG5_185210 [Ichthyophthirius multifiliis];; (*SWP) sp|P31863|TBB2_TRIVI (e_value=9e-152) Tubulin beta-2 chain OS=Trichoderma viride GN=tub2 PE=3 SV=1;; (*TAIR) AT4G20890.1 (e_value=7e-145) | Symbols: TUB9 | tubulin beta-9 chain | chr4:11182218-11183840 FORWARD LENGTH=444;; (*ITAG) Solyc04g081490.2.1 (e_value=6e-105) genomic_reference:SL2.40ch04 gene_region:63035466-63038329 transcript_region:SL2.40ch04:63035466..63038329- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- D7KT68_ARALY); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00023724g0003.1 protein AED:0.01 eAED:0.01 QI:242|0.5|0.33|1|1|1|3|135|1235; (*GB) gi|255539416|ref|XP_002510773.1| (e_value=0.0) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q38953|DHX8_ARATH (e_value=0.0) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2;; (*TAIR) AT3G26560.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc07g039550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:45039463-45043515 transcript_region:SL2.40ch07:45039463..45043515- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00027684g0006.1 protein AED:0.25 eAED:0.31 QI:0|0|0|0.88|0.25|0.33|9|0|777; (*GB) gi|225459499|ref|XP_002284416.1| (e_value=1e-105) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370-like [Vitis vinifera];; (*SWP) sp|O65238|Y5537_ARATH (e_value=5e-77) G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2;; (*TAIR) AT5G35370.1 (e_value=4e-78) | Symbols: | S-locus lectin protein kinase family protein | chr5:13588564-13591182 REVERSE LENGTH=872;; (*ITAG) Solyc11g013090.1.1 (e_value=6e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5934667-5948491 transcript_region:SL2.40ch11:5934667..5948491+ go_terms:GO:0005529,GO:0009274 functional_description:"Monofunctional biosynthetic peptidoglycan transglycosylase (AHRD V1 *-*- MTGA_THIDA); contains Interpro domain(s) IPR001264 Glycosyl transferase, family 51 "; GO:0005529,GO:0009274 NbS00027684g0007.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|0|0.33|3|0|108; (*ITAG) Solyc11g013090.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5934667-5948491 transcript_region:SL2.40ch11:5934667..5948491+ go_terms:GO:0005529,GO:0009274 functional_description:"Monofunctional biosynthetic peptidoglycan transglycosylase (AHRD V1 *-*- MTGA_THIDA); contains Interpro domain(s) IPR001264 Glycosyl transferase, family 51 "; GO:0005529,GO:0009274 NbS00012763g0124.1 protein AED:0.15 eAED:0.24 QI:0|0|0|1|0.33|0.42|7|0|900 NbS00012763g0123.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|266 NbS00012763g0107.1 protein AED:0.14 eAED:0.14 QI:311|1|0.75|1|1|1|4|0|385 NbS00012763g0111.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|89 NbS00012763g0125.1 protein AED:0.40 eAED:0.47 QI:0|0|0|1|0|0|2|0|241 NbS00019935g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|224099967|ref|XP_002311690.1| (e_value=9e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23510.1 (e_value=4e-21) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00019935g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.65|0.66|1|0.65|0.80|21|0|676; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*SWP) sp|P0A9H7|CFA_ECOLI (e_value=2e-14) Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2;; (*TAIR) AT3G23530.1 (e_value=4e-172) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867;; (*ITAG) Solyc03g045140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15588568-15596050 transcript_region:SL2.40ch03:15588568..15596050- go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00019935g0007.1 protein AED:0.26 eAED:0.26 QI:186|1|1|1|0.5|0.66|3|7|173; (*GB) gi|34582499|sp|Q8RU27.1|UPTG2_SOLTU (e_value=1e-17) RecName: Full=Alpha-1,4-glucan-protein synthase [UDP-forming] 2; AltName: Full=Reversibly glycosylated polypeptide 2; Short=RGP2; AltName: Full=UDP-glucose:protein transglucosylase 2; Short=UPTG 2;; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=4e-19) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT3G02230.1 (e_value=1e-17) | Symbols: RGP1, ATRGP1 | reversibly glycosylated polypeptide 1 | chr3:415463-417304 FORWARD LENGTH=357;; (*ITAG) Solyc04g005340.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:248903-251735 transcript_region:SL2.40ch04:248903..251735- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan protein synthase (AHRD V1 **-* Q8H8T0_ORYSJ); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00061688g0004.1 protein AED:0.21 eAED:0.26 QI:42|0.8|0.66|1|1|0.83|6|681|174; (*GB) gi|27728149|gb|AAN15319.1| (e_value=3e-109) isoamylase isoform 3 [Solanum tuberosum];; (*SWP) sp|Q9M0S5|ISOA3_ARATH (e_value=8e-89) Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2;; (*TAIR) AT4G09020.1 (e_value=6e-90) | Symbols: ATISA3, ISA3 | isoamylase 3 | chr4:5784099-5788839 FORWARD LENGTH=764;; (*ITAG) Solyc06g009220.2.1 (e_value=9e-87) genomic_reference:SL2.40ch06 gene_region:3155576-3182364 transcript_region:SL2.40ch06:3155576..3182364+ go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00025425g0010.1 protein AED:0.07 eAED:0.07 QI:102|1|1|1|1|1|10|349|404; (*GB) gi|380853856|gb|AFE88235.1| (e_value=0.0) acyl-carrier-protein S-malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8R3F5|FABD_MOUSE (e_value=4e-60) Malonyl-CoA-acyl carrier protein transacylase, mitochondrial OS=Mus musculus GN=Mcat PE=2 SV=3;; (*TAIR) AT2G30200.1 (e_value=0.0) | Symbols: | catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | chr2:12883162-12885482 REVERSE LENGTH=393;; (*ITAG) Solyc01g006980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1552093-1555934 transcript_region:SL2.40ch01:1552093..1555934+ go_terms:GO:0008152,GO:0006633 functional_description:"Malonyl CoA-acyl carrier protein transacylase containing protein expressed (AHRD V1 ***- Q10MS3_ORYSJ); contains Interpro domain(s) IPR004410 Malonyl CoA-acyl carrier protein transacylase "; GO:0008152,GO:0006633 NbS00025425g0009.1 protein AED:0.24 eAED:0.25 QI:216|0.90|0.91|1|0.72|0.73|23|0|1001; (*GB) gi|302143484|emb|CBI22045.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGE0|Y1765_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1;; (*TAIR) AT1G07650.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1014;; (*ITAG) Solyc07g055810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61058927-61068788 transcript_region:SL2.40ch07:61058927..61068788+ go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00051994g0007.1 protein AED:0.07 eAED:0.07 QI:875|0|0.33|1|0.5|0.66|3|0|380; (*GB) gi|224130444|ref|XP_002328610.1| (e_value=2e-67) type-b response regulator [Populus trichocarpa];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=7e-34) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=6e-35) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc12g099380.1.1 (e_value=6e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64889029-64893181 transcript_region:SL2.40ch12:64889029..64893181- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 10 (AHRD V1 ***- Q948L2_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355,GO:0045449 NbS00051994g0006.1 protein AED:0.09 eAED:0.09 QI:336|1|0.66|1|1|1|3|342|180; (*GB) gi|225431869|ref|XP_002275498.1| (e_value=4e-40) PREDICTED: GATA transcription factor 16 [Vitis vinifera];; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=2e-34) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=1e-35) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc12g099370.1.1 (e_value=5e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64886840-64888068 transcript_region:SL2.40ch12:64886840..64888068+ go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00026434g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0.91|1|0.90|0.83|12|0|699; (*GB) gi|13536983|dbj|BAB40710.1| (e_value=0.0) BY-2 kinesin-like protein 10 [Nicotiana tabacum];; (*SWP) sp|Q6S004|KIF6_DICDI (e_value=4e-117) Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1;; (*TAIR) AT3G16060.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr3:5447503-5451196 FORWARD LENGTH=684;; (*ITAG) Solyc03g120810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63120435-63126195 transcript_region:SL2.40ch03:63120435..63126195- go_terms:GO:0007018 functional_description:"BY-inesin-like protein 10 (AHRD V1 ***- Q9AVP4_TOBAC); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00026434g0005.1 protein AED:0.09 eAED:0.09 QI:163|1|1|1|1|1|4|316|98; (*GB) gi|357513395|ref|XP_003626986.1| (e_value=1e-47) Cytochrome c oxidase assembly protein COX19 [Medicago truncatula];; (*SWP) sp|Q4P821|COX19_USTMA (e_value=4e-19) Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=COX19 PE=3 SV=1;; (*TAIR) AT1G66590.1 (e_value=2e-49) | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidase 19-1 | chr1:24841191-24842157 FORWARD LENGTH=98;; (*ITAG) Solyc03g120820.2.1 (e_value=7e-60) genomic_reference:SL2.40ch03 gene_region:63130746-63133754 transcript_region:SL2.40ch03:63130746..63133754- go_terms:GO:0016531 functional_description:"Cytochrome c oxidase assembly protein COX19 (AHRD V1 ***- B6SM12_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0016531 NbS00001586g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.82|0.77|1|0.64|0.72|18|55|575; (*GB) gi|359478193|ref|XP_002273984.2| (e_value=0.0) PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera];; (*TAIR) AT3G59660.1 (e_value=0.0) | Symbols: | C2 domain-containing protein / GRAM domain-containing protein | chr3:22034426-22038484 REVERSE LENGTH=594;; (*ITAG) Solyc06g053420.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32678901-32692471 transcript_region:SL2.40ch06:32678901..32692471+ go_terms:GO:0005840 functional_description:"GRAM domain containing protein (AHRD V1 ***- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; GO:0005840 NbS00001586g0011.1 protein AED:0.31 eAED:0.31 QI:143|1|1|1|1|1|4|230|155; (*GB) gi|225434108|ref|XP_002273955.1| (e_value=7e-84) PREDICTED: 15 kDa selenoprotein-like [Vitis vinifera];; (*SWP) sp|O60613|SEP15_HUMAN (e_value=7e-22) 15 kDa selenoprotein OS=Homo sapiens GN=SEP15 PE=1 SV=3;; (*TAIR) AT1G05720.1 (e_value=1e-82) | Symbols: | selenoprotein family protein | chr1:1717677-1718849 REVERSE LENGTH=163;; (*ITAG) Solyc06g053430.2.1 (e_value=2e-101) genomic_reference:SL2.40ch06 gene_region:32694183-32700352 transcript_region:SL2.40ch06:32694183..32700352+ functional_description:"selenoprotein (AHRD V1 ***- B0WAC9_CULQU); contains Interpro domain(s) IPR014912 Sep15/SelM redox "; NbS00001586g0015.1 protein AED:0.15 eAED:0.15 QI:0|0.92|0.92|1|0.84|0.71|14|477|589; (*GB) gi|193290704|gb|ACF17660.1| (e_value=0.0) putative isopropylmalate synthase [Capsicum annuum];; (*SWP) sp|O04974|LEU1B_SOLPN (e_value=0.0) 2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1;; (*TAIR) AT1G74040.1 (e_value=0.0) | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631;; (*ITAG) Solyc06g053400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32654699-32664611 transcript_region:SL2.40ch06:32654699..32664611+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase "; GO:0003852 NbS00029608g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|0|1|0|146; (*GB) gi|3024505|sp|Q40522.1|RB11D_TOBAC (e_value=4e-95) RecName: Full=Ras-related protein Rab11D;; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=1e-96) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1;; (*TAIR) AT5G65270.1 (e_value=4e-83) | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226;; (*ITAG) Solyc11g010100.1.1 (e_value=9e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00040775g0003.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|0.5|1|1|4|0|250; (*GB) gi|225446463|ref|XP_002275319.1| (e_value=1e-100) PREDICTED: NAC domain-containing protein 8 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=8e-52) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G28500.1 (e_value=1e-95) | Symbols: ANAC073, SND2, NAC073 | NAC domain containing protein 73 | chr4:14083014-14084266 FORWARD LENGTH=305;; (*ITAG) Solyc07g053590.2.1 (e_value=2e-113) genomic_reference:SL2.40ch07 gene_region:59332888-59335327 transcript_region:SL2.40ch07:59332888..59335327- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MYC7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00045139g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|340|462; (*GB) gi|255555883|ref|XP_002518977.1| (e_value=1e-117) transcription factor, putative [Ricinus communis];; (*TAIR) AT5G46910.1 (e_value=7e-81) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc08g076390.2.1 (e_value=7e-175) genomic_reference:SL2.40ch08 gene_region:57566162-57571967 transcript_region:SL2.40ch08:57566162..57571967+ go_terms:GO:0005634 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634 NbS00012450g0009.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|0|0|2|0|76; (*GB) gi|225460849|ref|XP_002277187.1| (e_value=8e-33) PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Vitis vinifera];; (*TAIR) AT4G26750.1 (e_value=4e-35) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475848-13478382 REVERSE LENGTH=421;; (*ITAG) Solyc07g064980.2.1 (e_value=5e-38) genomic_reference:SL2.40ch07 gene_region:64146302-64151201 transcript_region:SL2.40ch07:64146302..64151201+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein VTA1 homolog (AHRD V1 *--- C1C2K6_9MAXI); contains Interpro domain(s) IPR006745 Protein of unknown function DUF605 "; GO:0005515 NbS00012450g0010.1 protein AED:0.28 eAED:0.28 QI:225|0.90|0.83|0.91|0.63|0.66|12|0|610; (*GB) gi|11558252|emb|CAC17794.1| (e_value=0.0) microtubule-associated protein MAP65-1a [Nicotiana tabacum];; (*SWP) sp|Q9FLP0|MA651_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1;; (*TAIR) AT5G55230.1 (e_value=0.0) | Symbols: ATMAP65-1, MAP65-1 | microtubule-associated proteins 65-1 | chr5:22402716-22405182 FORWARD LENGTH=587;; (*ITAG) Solyc07g064970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64141117-64144666 transcript_region:SL2.40ch07:64141117..64144666+ go_terms:GO:0008017,GO:0046983 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017,GO:0046983 NbS00033384g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|112; (*GB) gi|317376136|sp|B7FKW7.1|CYNS_MEDTR (e_value=2e-47) RecName: Full=Cyanate hydratase; Short=Cyanase; AltName: Full=Cyanate hydrolase; AltName: Full=Cyanate lyase;; (*SWP) sp|B7FKW7|CYNS_MEDTR (e_value=5e-49) Cyanate hydratase OS=Medicago truncatula GN=CYN PE=2 SV=1;; (*TAIR) AT3G23490.1 (e_value=4e-45) | Symbols: CYN | cyanase | chr3:8423238-8424415 REVERSE LENGTH=168;; (*ITAG) Solyc09g090430.2.1 (e_value=5e-58) genomic_reference:SL2.40ch09 gene_region:65298327-65302769 transcript_region:SL2.40ch09:65298327..65302769- go_terms:GO:0008152,GO:0003677,GO:0009439 functional_description:"Cyanate hydratase (AHRD V1 ***- B6TTW1_MAIZE); contains Interpro domain(s) IPR008076 Cyanase "; GO:0008152,GO:0003677,GO:0009439 NbS00015587g0008.1 protein AED:0.29 eAED:0.29 QI:136|0.5|0.63|1|0.3|0.36|11|386|433; (*GB) gi|225443938|ref|XP_002279094.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera];; (*SWP) sp|Q7FGZ2|RH1_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3;; (*TAIR) AT4G15850.1 (e_value=0.0) | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:9001426-9004534 FORWARD LENGTH=522;; (*ITAG) Solyc07g005890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:729035-737605 transcript_region:SL2.40ch07:729035..737605- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8NUN2_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00004647g0004.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|3|0|331; (*GB) gi|356553387|ref|XP_003545038.1| (e_value=3e-129) PREDICTED: DNA/RNA-binding protein KIN17-like isoform 1 [Glycine max];; (*SWP) sp|Q8K339|KIN17_MOUSE (e_value=2e-68) DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1;; (*TAIR) AT1G55460.1 (e_value=3e-117) | Symbols: | DNA/RNA-binding protein Kin17, conserved region | chr1:20707567-20708802 FORWARD LENGTH=411;; (*ITAG) Solyc05g054500.1.1 (e_value=2e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63560285-63561484 transcript_region:SL2.40ch05:63560285..63561484- go_terms:GO:0003723,GO:0003690 functional_description:"DNA/RNA-binding protein KIN17 (AHRD V1 **-* KIN17_MOUSE); contains Interpro domain(s) IPR019447 DNA/RNA-binding protein Kin17, conserved region "; GO:0003723,GO:0003690 NbS00004647g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|120 NbS00012519g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|87 NbS00036430g0009.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|4|0|448; (*GB) gi|113170490|ref|YP_717281.1| (e_value=2e-170) Atp1 [Ostreococcus tauri];; (*SWP) sp|B3PQ70|ATPA_RHIE6 (e_value=2e-158) ATP synthase subunit alpha OS=Rhizobium etli (strain CIAT 652) GN=atpA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=2e-149) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=6e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00036430g0011.1 protein AED:0.45 eAED:0.51 QI:0|0|0|0.83|0|0|6|0|329; (*GB) gi|57013984|ref|YP_173456.1| (e_value=4e-81) cytochrome oxidase subunit 3 [Nicotiana tabacum];; (*SWP) sp|P32808|COX3_HELAN (e_value=3e-79) Cytochrome c oxidase subunit 3 OS=Helianthus annuus GN=COX3 PE=3 SV=1;; (*ITAG) ATMG00730.1 (e_value=4e-73) | Symbols: COX3 | cytochrome c oxidase subunit 3 | chrM:218280-219077 FORWARD LENGTH=265;; (*ITAG) Solyc00g019730.1.1 (e_value=5e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11782543-11782983 transcript_region:SL2.40ch00:11782543..11782983- go_terms:GO:0016020 functional_description:"Cytochrome c oxidase subunit 3 (AHRD V1 ***- Q5M9V7_TOBAC); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III "; GO:0016020 NbS00036430g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|176; (*GB) gi|57013986|ref|YP_173458.1| (e_value=9e-91) hypothetical protein NitaMp120 [Nicotiana tabacum];; (*ITAG) Solyc11g039990.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:28096317-28096706 transcript_region:SL2.40ch11:28096317..28096706- functional_description:"Unknown Protein (AHRD V1)"; NbS00015539g0019.1 protein AED:0.16 eAED:0.16 QI:0|0.71|0.62|0.87|1|1|8|0|414; (*GB) gi|147867007|emb|CAN80518.1| (e_value=1e-70) hypothetical protein VITISV_009170 [Vitis vinifera];; (*TAIR) AT1G10190.1 (e_value=8e-61) | Symbols: | Protein of Unknown Function (DUF239) | chr1:3343765-3345591 REVERSE LENGTH=396;; (*ITAG) Solyc08g074870.1.1 (e_value=5e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56182191-56186322 transcript_region:SL2.40ch08:56182191..56186322- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SXW9_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00015539g0017.1 protein AED:0.00 eAED:0.00 QI:28|1|0.66|1|1|1|3|0|63; (*GB) gi|232190|sp|P30708.1|GPX4_NICSY (e_value=2e-36) RecName: Full=Probable phospholipid hydroperoxide glutathione peroxidase; Short=PHGPx; AltName: Full=6P229;; (*SWP) sp|P30708|GPX4_NICSY (e_value=6e-38) Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT4G11600.1 (e_value=7e-31) | Symbols: ATGPX6, PHGPX, LSC803, GPX6 | glutathione peroxidase 6 | chr4:7010021-7011330 REVERSE LENGTH=232;; (*ITAG) Solyc08g080940.2.1 (e_value=4e-36) genomic_reference:SL2.40ch08 gene_region:61250698-61253731 transcript_region:SL2.40ch08:61250698..61253731+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- Q4VY91_CAPCH); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00015539g0023.1 protein AED:0.23 eAED:0.40 QI:0|0.16|0|1|0|0|7|0|322; (*GB) gi|224053933|ref|XP_002298045.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGH8|Y1634_ARATH (e_value=5e-59) Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1;; (*TAIR) AT1G63430.1 (e_value=4e-60) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23522896-23526451 FORWARD LENGTH=664;; (*ITAG) Solyc08g080830.2.1 (e_value=8e-103) genomic_reference:SL2.40ch08 gene_region:61177982-61182919 transcript_region:SL2.40ch08:61177982..61182919- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015539g0022.1 protein AED:0.59 eAED:1.00 QI:82|0|0|1|0|0.5|2|0|44 NbS00015539g0021.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|0|0|2|0|717; (*GB) gi|297742531|emb|CBI34680.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=2e-110) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G63450.1 (e_value=0.0) | Symbols: RHS8 | root hair specific 8 | chr1:23532523-23534517 FORWARD LENGTH=664;; (*ITAG) Solyc08g080930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61247589-61249547 transcript_region:SL2.40ch08:61247589..61249547+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 *--- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00009736g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|109 NbS00006197g0002.1 protein AED:0.05 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|357500345|ref|XP_003620461.1| (e_value=4e-20) hypothetical protein MTR_6g084200 [Medicago truncatula];; (*TAIR) AT3G18360.1 (e_value=3e-14) | Symbols: | VQ motif-containing protein | chr3:6300827-6301684 REVERSE LENGTH=285;; (*ITAG) Solyc03g119410.1.1 (e_value=5e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62087131-62087586 transcript_region:SL2.40ch03:62087131..62087586- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00006197g0001.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|220; (*ITAG) Solyc03g119430.2.1 (e_value=1e-79) genomic_reference:SL2.40ch03 gene_region:62095946-62099039 transcript_region:SL2.40ch03:62095946..62099039- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q9Y6G0_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00006197g0015.1 protein AED:0.15 eAED:0.15 QI:313|1|1|1|1|1|9|506|692; (*GB) gi|255582763|ref|XP_002532158.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G48840.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr1:18061931-18064811 FORWARD LENGTH=691;; (*ITAG) Solyc03g119400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62081128-62086377 transcript_region:SL2.40ch03:62081128..62086377+ functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00027242g0004.1 protein AED:0.29 eAED:0.38 QI:131|0.5|0.66|1|0|0.33|3|0|67; (*GB) gi|260907734|gb|ACX53672.1| (e_value=3e-32) mitochondrial ATP synthase 6kDa subunit [Capsicum annuum];; (*TAIR) AT5G59613.2 (e_value=6e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). | chr5:24015726-24016500 REVERSE LENGTH=55;; (*ITAG) Solyc11g005050.1.1 (e_value=5e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50543-52067 transcript_region:SL2.40ch11:50543..52067- functional_description:"Mitochondrial ATP synthase subunit (AHRD V1 ***- C8CMP2_ORYSI)"; NbS00027242g0006.1 protein AED:0.26 eAED:0.36 QI:0|0|0|1|0|0|2|0|578; (*GB) gi|359492369|ref|XP_002284600.2| (e_value=2e-111) PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera];; (*TAIR) AT1G21651.1 (e_value=1e-77) | Symbols: | zinc ion binding | chr1:7601061-7604152 REVERSE LENGTH=811;; (*ITAG) Solyc11g005040.1.1 (e_value=1e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48376-49724 transcript_region:SL2.40ch11:48376..49724- go_terms:GO:0006468,GO:0008270 functional_description:"Protein translocase subunit secA (AHRD V1 ***- B9S2U6_RICCO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006468,GO:0008270 NbS00006897g0011.1 protein AED:0.00 eAED:0.00 QI:218|1|1|1|0.5|0.33|3|473|462; (*GB) gi|147856803|emb|CAN79179.1| (e_value=1e-46) hypothetical protein VITISV_016730 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=2e-31) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT5G04110.1 (e_value=1e-43) | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112 REVERSE LENGTH=546;; (*ITAG) Solyc09g014170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5643932-5650838 transcript_region:SL2.40ch09:5643932..5650838- functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR000949 ELM2 "; NbS00006897g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|518; (*GB) gi|147833070|emb|CAN77584.1| (e_value=0.0) hypothetical protein VITISV_034996 [Vitis vinifera];; (*SWP) sp|Q9SS81|PP221_ARATH (e_value=4e-170) Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1;; (*TAIR) AT3G09060.1 (e_value=3e-171) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2766367-2768430 REVERSE LENGTH=687;; (*ITAG) Solyc09g014210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5705197-5707260 transcript_region:SL2.40ch09:5705197..5707260+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7R1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006897g0006.1 protein AED:0.39 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|154; (*GB) gi|1709761|sp|P52427.1|PSA4_SPIOL (e_value=1e-81) RecName: Full=Proteasome subunit alpha type-4; AltName: Full=20S proteasome alpha subunit C; AltName: Full=20S proteasome subunit alpha-3; AltName: Full=Proteasome 27 kDa subunit;; (*SWP) sp|P52427|PSA4_SPIOL (e_value=4e-83) Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1;; (*TAIR) AT3G22110.1 (e_value=1e-82) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=6e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00006897g0010.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|153; (*GB) gi|77999303|gb|ABB16998.1| (e_value=2e-38) proteasome-like protein alpha subunit [Solanum tuberosum];; (*SWP) sp|P52427|PSA4_SPIOL (e_value=2e-39) Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1;; (*TAIR) AT3G22110.1 (e_value=1e-39) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=4e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00032930g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|20546|emb|CAA43111.1| (e_value=1e-87) DNA-binding protein [Petunia x hybrida];; (*SWP) sp|Q681X4|ZAT5_ARATH (e_value=1e-43) Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1;; (*TAIR) AT2G28200.1 (e_value=9e-45) | Symbols: | C2H2-type zinc finger family protein | chr2:12024321-12025181 FORWARD LENGTH=286;; (*ITAG) Solyc06g074800.1.1 (e_value=7e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42723596-42724576 transcript_region:SL2.40ch06:42723596..42724576- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00010472g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|434; (*GB) gi|255764587|gb|ACU33853.1| (e_value=0.0) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-78) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-78) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00010472g0017.1 protein AED:0.34 eAED:0.38 QI:0|0|0|1|0|0.2|5|0|693; (*GB) gi|22128591|gb|AAM52341.1| (e_value=5e-124) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD8|PPR90_ARATH (e_value=3e-73) Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1;; (*TAIR) AT1G62590.1 (e_value=2e-74) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23177294-23179198 REVERSE LENGTH=634;; (*ITAG) Solyc06g007300.1.1 (e_value=7e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00010472g0005.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|255764587|gb|ACU33853.1| (e_value=5e-58) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=6e-20) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=5e-21) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=5e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00010472g0018.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|2|0|350; (*GB) gi|22128591|gb|AAM52341.1| (e_value=3e-152) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=2e-81) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=1e-82) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00013468g0005.1 protein AED:0.01 eAED:0.01 QI:213|1|1|1|0.5|0.33|3|242|983; (*GB) gi|255553619|ref|XP_002517850.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT1G28440.1 (e_value=0.0) | Symbols: HSL1 | HAESA-like 1 | chr1:9996914-10000171 FORWARD LENGTH=996;; (*ITAG) Solyc07g053600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59345101-59348898 transcript_region:SL2.40ch07:59345101..59348898- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000966g0001.1 protein AED:0.16 eAED:0.19 QI:0|0.54|0.66|0.91|1|1|12|832|523; (*GB) gi|296086738|emb|CBI32373.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4IQV7|SCY2_ARATH (e_value=0.0) Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1;; (*TAIR) AT2G31530.1 (e_value=0.0) | Symbols: EMB2289, SCY2 | SecY protein transport family protein | chr2:13427060-13430308 FORWARD LENGTH=575;; (*ITAG) Solyc09g065120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58581273-58591924 transcript_region:SL2.40ch09:58581273..58591924- go_terms:GO:0006508,GO:0016020 functional_description:"Preprotein translocase secY subunit (AHRD V1 ***- B6U7Q0_MAIZE); contains Interpro domain(s) IPR002208 SecY protein "; GO:0006508,GO:0016020 NbS00003318g0014.1 protein AED:0.16 eAED:0.16 QI:20|0.75|0.66|1|0.5|0.77|9|409|385; (*GB) gi|51316088|sp|Q9FEW2.1|HIS8_NICPL (e_value=0.0) RecName: Full=Histidinol-phosphate aminotransferase, chloroplastic; AltName: Full=Imidazole acetol-phosphate transaminase; Flags: Precursor;; (*SWP) sp|Q9FEW2|HIS8_NICPL (e_value=0.0) Histidinol-phosphate aminotransferase, chloroplastic OS=Nicotiana plumbaginifolia GN=HPA PE=1 SV=1;; (*TAIR) AT5G10330.2 (e_value=0.0) | Symbols: EMB2196, HPA1, HISN6A, ATHPA1 | histidinol phosphate aminotransferase 1 | chr5:3248027-3249858 REVERSE LENGTH=417;; (*ITAG) Solyc04g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2786259-2793145 transcript_region:SL2.40ch04:2786259..2793145- go_terms:GO:0004400 functional_description:"Histidinol-phosphate aminotransferase (AHRD V1 **** B6TRS1_MAIZE); contains Interpro domain(s) IPR005861 Histidinol-phosphate aminotransferase "; GO:0004400 NbS00003318g0012.1 protein AED:0.24 eAED:0.24 QI:236|1|1|1|0.33|0.75|4|183|437; (*GB) gi|225461205|ref|XP_002280346.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 25-like [Vitis vinifera];; (*SWP) sp|Q64LD2|WDR25_HUMAN (e_value=1e-73) WD repeat-containing protein 25 OS=Homo sapiens GN=WDR25 PE=1 SV=3;; (*TAIR) AT5G54520.1 (e_value=3e-169) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22146781-22149089 REVERSE LENGTH=457;; (*ITAG) Solyc04g009360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2793909-2799625 transcript_region:SL2.40ch04:2793909..2799625- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MUA3_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00003318g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|0.72|0.83|12|420|562; (*GB) gi|225425069|ref|XP_002270763.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247878 [Vitis vinifera];; (*SWP) sp|Q6DBN5|PUB62_ARATH (e_value=2e-38) U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1;; (*TAIR) AT3G19895.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:6917530-6921211 REVERSE LENGTH=554;; (*ITAG) Solyc04g009340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2776459-2785611 transcript_region:SL2.40ch04:2776459..2785611- functional_description:"U-box domain-containing protein 62 (AHRD V1 *-*- PUB62_ARATH)"; NbS00019153g0014.1 protein AED:0.10 eAED:0.10 QI:69|1|0.75|1|1|1|4|0|387; (*GB) gi|359486495|ref|XP_002272594.2| (e_value=3e-149) PREDICTED: probable protein phosphatase 2C 25-like [Vitis vinifera];; (*SWP) sp|Q9XEE8|P2C30_ARATH (e_value=4e-127) Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1;; (*TAIR) AT2G40180.1 (e_value=3e-128) | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2:16782522-16784014 FORWARD LENGTH=390;; (*ITAG) Solyc05g052520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61892748-61895062 transcript_region:SL2.40ch05:61892748..61895062- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q3V656_SOLTU); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00019153g0015.1 protein AED:0.14 eAED:0.14 QI:159|0.84|0.88|1|0.96|0.92|27|471|1387; (*GB) gi|125535486|gb|EAY81974.1| (e_value=0.0) hypothetical protein OsI_37152 [Oryza sativa Indica Group];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=0.0) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc06g051310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31032238-31043527 transcript_region:SL2.40ch06:31032238..31043527+ go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00019153g0019.1 protein AED:0.19 eAED:0.19 QI:125|0.87|0.77|1|0.75|0.66|9|0|764; (*GB) gi|225448534|ref|XP_002273466.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT23 [Vitis vinifera];; (*SWP) sp|Q9SIZ3|PMTN_ARATH (e_value=0.0) Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2;; (*TAIR) AT2G40280.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16825707-16828300 REVERSE LENGTH=589;; (*ITAG) Solyc05g052500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61857465-61864807 transcript_region:SL2.40ch05:61857465..61864807+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00035820g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.4|0.6|0.75|0.6|5|307|104; (*TAIR) AT4G11720.1 (e_value=4e-14) | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063291-7066784 FORWARD LENGTH=705;; (*ITAG) Solyc08g080450.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60903285-60911855 transcript_region:SL2.40ch08:60903285..60911855- functional_description:"Generative cell specific-1 (Fragment) (AHRD V1 ***- Q2PGG4_CHLRE); contains Interpro domain(s) IPR018928 Generative cell specific-1, HAP2-GCS1 "; NbS00014752g0105.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0|0|4|0|213 NbS00036083g0003.1 protein AED:0.31 eAED:0.31 QI:674|1|0.75|1|0.66|0.75|4|0|270; (*GB) gi|21105744|gb|AAM34771.1|AF509871_1 (e_value=5e-153) nam-like protein 8 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-31) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10490.2 (e_value=2e-35) | Symbols: ANAC052, NAC052 | NAC domain containing protein 52 | chr3:3268075-3270608 FORWARD LENGTH=451;; (*ITAG) Solyc05g055480.2.1 (e_value=4e-142) genomic_reference:SL2.40ch05 gene_region:64255495-64259429 transcript_region:SL2.40ch05:64255495..64259429- go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00031872g0001.1 protein AED:0.26 eAED:0.27 QI:0|0.83|0.71|1|1|1|7|0|559; (*GB) gi|211906506|gb|ACJ11746.1| (e_value=0.0) luminal binding protein [Gossypium hirsutum];; (*SWP) sp|P49118|BIP_SOLLC (e_value=0.0) Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=0.0) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc08g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62655311-62659585 transcript_region:SL2.40ch08:62655311..62659585+ go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00003550g0004.1 protein AED:0.20 eAED:0.20 QI:138|1|1|1|1|1|7|200|366; (*GB) gi|345547467|gb|AEO12091.1| (e_value=0.0) acyl-ACP thioesterase [Capsicum frutescens];; (*SWP) sp|Q42712|FATA_CORSA (e_value=7e-177) Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1;; (*TAIR) AT3G25110.1 (e_value=4e-177) | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesterase | chr3:9146589-9148273 REVERSE LENGTH=362;; (*ITAG) Solyc06g083380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45086448-45091016 transcript_region:SL2.40ch06:45086448..45091016+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** D7RU32_CAPAN); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00034966g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.93|0.94|1|0.87|0.94|17|0|486; (*GB) gi|225430744|ref|XP_002266704.1| (e_value=0.0) PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera];; (*SWP) sp|Q93YP9|ERDL4_ARATH (e_value=0.0) Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1;; (*TAIR) AT1G19450.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:6731671-6734633 REVERSE LENGTH=488;; (*ITAG) Solyc02g062750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29104055-29107946 transcript_region:SL2.40ch02:29104055..29107946+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00034966g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|0.8|1|1|1|5|375|417; (*GB) gi|225430736|ref|XP_002266534.1| (e_value=0.0) PREDICTED: ATPase family AAA domain-containing protein 3-A [Vitis vinifera];; (*SWP) sp|A7YWC4|ATAD3_BOVIN (e_value=3e-80) ATPase family AAA domain-containing protein 3 OS=Bos taurus GN=ATAD3 PE=2 SV=1;; (*TAIR) AT2G18330.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr2:7965829-7968915 FORWARD LENGTH=636;; (*ITAG) Solyc02g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29006768-29014242 transcript_region:SL2.40ch02:29006768..29014242+ go_terms:GO:0005515 functional_description:"26S protease regulatory subunit 6A (AHRD V1 *--- PRS6A_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005515 NbS00034966g0001.1 protein AED:0.42 eAED:0.44 QI:0|1|0.75|1|1|1|4|0|237; (*GB) gi|224097014|ref|XP_002310811.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q58E76|ATD3A_XENLA (e_value=7e-11) ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis GN=atad3-a PE=2 SV=1;; (*TAIR) AT4G36580.1 (e_value=1e-76) | Symbols: | AAA-type ATPase family protein | chr4:17257958-17260661 FORWARD LENGTH=632;; (*ITAG) Solyc02g062700.2.1 (e_value=8e-103) genomic_reference:SL2.40ch02 gene_region:29006768-29014242 transcript_region:SL2.40ch02:29006768..29014242+ go_terms:GO:0005515 functional_description:"26S protease regulatory subunit 6A (AHRD V1 *--- PRS6A_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005515 NbS00022362g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|93280156|gb|ABF06706.1| (e_value=7e-23) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=2e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00016328g0002.1 protein AED:0.27 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|121; (*ITAG) Solyc12g005690.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:371795-372187 transcript_region:SL2.40ch12:371795..372187- functional_description:"Unknown Protein (AHRD V1)"; NbS00016328g0004.1 protein AED:0.42 eAED:0.48 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|351585136|gb|AEQ47054.1| (e_value=6e-33) maturase K, partial (chloroplast) [Lycium barbarum];; (*SWP) sp|Q70D40|MATK_NICTO (e_value=6e-33) Maturase K OS=Nicotiana tomentosiformis GN=matK PE=3 SV=1;; (*ITAG) ATCG00040.1 (e_value=3e-20) | Symbols: MATK | maturase K | chrC:2056-3636 REVERSE LENGTH=526; NbS00016328g0005.1 protein AED:0.52 eAED:0.61 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|290489638|gb|ADD31203.1| (e_value=3e-35) RNA polymerase beta subunit protein [Gunnera manicata];; (*SWP) sp|Q0ZJ28|RPOB_VITVI (e_value=9e-37) DNA-directed RNA polymerase subunit beta OS=Vitis vinifera GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=1e-36) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g035870.1.1 (e_value=6e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29020873-29022576 transcript_region:SL2.40ch12:29020873..29022576+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WBK7_9AQUA); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00016328g0006.1 protein AED:0.59 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|60 NbS00014082g0202.1 protein AED:0.37 eAED:0.79 QI:97|1|0.5|1|0|0|2|0|89 NbS00026548g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.55|0.4|1|0.44|0.5|10|0|642; (*GB) gi|255550026|ref|XP_002516064.1| (e_value=2e-126) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|O64793|Y1675_ARATH (e_value=3e-110) G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3;; (*TAIR) AT3G16030.1 (e_value=3e-110) | Symbols: CES101 | lectin protein kinase family protein | chr3:5439609-5442802 FORWARD LENGTH=850;; (*ITAG) Solyc12g006840.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1254397-1257951 transcript_region:SL2.40ch12:1254397..1257951+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00002887g0004.1 protein AED:0.08 eAED:0.08 QI:497|1|0.71|1|1|0.85|7|0|1041; (*GB) gi|225438996|ref|XP_002284429.1| (e_value=0.0) PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform 1 [Vitis vinifera];; (*SWP) sp|O81108|ACA2_ARATH (e_value=0.0) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1;; (*TAIR) AT4G37640.1 (e_value=0.0) | Symbols: ACA2 | calcium ATPase 2 | chr4:17683225-17686808 REVERSE LENGTH=1014;; (*ITAG) Solyc02g064680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30333568-30339094 transcript_region:SL2.40ch02:30333568..30339094+ go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00032848g0002.1 protein AED:0.08 eAED:0.20 QI:0|0|0|1|0|0|2|0|238; (*GB) gi|224143539|ref|XP_002324990.1| (e_value=6e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19650.1 (e_value=4e-20) | Symbols: ATOFP8, OFP8 | ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221;; (*ITAG) Solyc08g068170.1.1 (e_value=8e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54495235-54496749 transcript_region:SL2.40ch08:54495235..54496749- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SHS0_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00039686g0009.1 protein AED:0.03 eAED:0.04 QI:7|0.5|0|0.66|1|0.66|3|0|409; (*GB) gi|225432476|ref|XP_002279067.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259662 [Vitis vinifera];; (*SWP) sp|Q5E9X5|AP5M1_BOVIN (e_value=2e-18) AP-5 complex subunit mu-1 OS=Bos taurus GN=AP5M1 PE=2 SV=1;; (*TAIR) AT2G20790.2 (e_value=0.0) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952054 REVERSE LENGTH=475;; (*ITAG) Solyc01g080360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72102428-72119735 transcript_region:SL2.40ch01:72102428..72119735+ go_terms:GO:0030131 functional_description:"MHD domain-containing death-inducing protein (AHRD V1 *--- MUDEN_HUMAN); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0030131 NbS00039686g0003.1 protein AED:0.90 eAED:0.90 QI:0|0|0.2|0.2|1|1|5|0|114 NbS00039686g0002.1 protein AED:0.08 eAED:0.14 QI:0|0|0|1|1|1|2|0|334; (*GB) gi|225432474|ref|XP_002277334.1| (e_value=6e-149) PREDICTED: probable galacturonosyltransferase-like 4 [Vitis vinifera];; (*SWP) sp|Q9M8J2|GATL4_ARATH (e_value=8e-140) Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1;; (*TAIR) AT3G06260.1 (e_value=6e-141) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351;; (*ITAG) Solyc01g080370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72119143-72121647 transcript_region:SL2.40ch01:72119143..72121647- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 *-*- B9HK74_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00037644g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.87|1|1|1|8|126|691; (*GB) gi|359475954|ref|XP_002279357.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=6e-121) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT5G12000.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:3874151-3876780 REVERSE LENGTH=701;; (*ITAG) Solyc06g043250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:26876186-26879989 transcript_region:SL2.40ch06:26876186..26879989+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00047867g0002.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|0|0|2|0|111; (*GB) gi|225429912|ref|XP_002281133.1| (e_value=4e-28) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera];; (*SWP) sp|O82318|Y2579_ARATH (e_value=4e-19) Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1;; (*TAIR) AT2G25790.1 (e_value=3e-20) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr2:11000631-11004031 FORWARD LENGTH=960;; (*ITAG) Solyc08g066490.2.1 (e_value=7e-43) genomic_reference:SL2.40ch08 gene_region:52383161-52387655 transcript_region:SL2.40ch08:52383161..52387655+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00030362g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=4e-45) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=2e-43) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=2e-44) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g053110.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50860076-50860384 transcript_region:SL2.40ch04:50860076..50860384+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00030362g0005.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|297848524|ref|XP_002892143.1| (e_value=6e-43) glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SA68|GRXS1_ARATH (e_value=3e-43) Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1;; (*TAIR) AT1G03020.1 (e_value=2e-44) | Symbols: | Thioredoxin superfamily protein | chr1:698207-698515 REVERSE LENGTH=102;; (*ITAG) Solyc00g028960.1.1 (e_value=6e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12511435-12511746 transcript_region:SL2.40ch00:12511435..12511746- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7KCA5_ARALY); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00020600g0007.1 protein AED:0.15 eAED:0.15 QI:196|1|1|1|1|1|4|497|260; (*GB) gi|3023189|sp|P93343.1|1433C_TOBAC (e_value=0.0) RecName: Full=14-3-3-like protein C; AltName: Full=14-3-3-like protein B;; (*SWP) sp|P93343|1433C_TOBAC (e_value=0.0) 14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT1G78300.1 (e_value=1e-165) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g074510.2.1 (e_value=1e-177) genomic_reference:SL2.40ch04 gene_region:58094139-58096300 transcript_region:SL2.40ch04:58094139..58096300+ go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-B (AHRD V1 **-- 143BB_XENLA); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00026489g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|262; (*GB) gi|255555093|ref|XP_002518584.1| (e_value=2e-85) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LK58|PP225_ARATH (e_value=6e-70) Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1;; (*TAIR) AT3G13150.1 (e_value=5e-71) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4227975-4229630 REVERSE LENGTH=551;; (*ITAG) Solyc02g079830.1.1 (e_value=8e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00026489g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|297737675|emb|CBI26876.3| (e_value=3e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01540.1 (e_value=1e-31) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:242297-243233 REVERSE LENGTH=180;; (*ITAG) Solyc06g053390.2.1 (e_value=2e-54) genomic_reference:SL2.40ch06 gene_region:32647940-32649497 transcript_region:SL2.40ch06:32647940..32649497+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7LLS3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00026489g0003.1 protein AED:0.19 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|255555093|ref|XP_002518584.1| (e_value=1e-37) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LK57|PP226_ARATH (e_value=4e-27) Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1;; (*TAIR) AT3G13160.1 (e_value=3e-28) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394;; (*ITAG) Solyc02g079830.1.1 (e_value=1e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041882g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|2|239|159; (*GB) gi|558606|emb|CAA50022.1| (e_value=6e-86) Nthsp18p [Nicotiana tabacum];; (*SWP) sp|P13853|HS17C_ARATH (e_value=6e-66) 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2;; (*TAIR) AT1G53540.1 (e_value=4e-67) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980510-19980983 FORWARD LENGTH=157;; (*ITAG) Solyc09g015020.1.1 (e_value=2e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7440133-7440597 transcript_region:SL2.40ch09:7440133..7440597+ go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00036349g0011.1 protein AED:0.19 eAED:0.19 QI:99|0.85|0.75|1|0.85|0.87|8|53|378; (*GB) gi|19774137|gb|AAL99045.1|AF487527_1 (e_value=0.0) D1 protease-like protein precursor [Nicotiana plumbaginifolia];; (*SWP) sp|P42784|CTPA_SYNP2 (e_value=3e-42) Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2;; (*TAIR) AT5G46390.1 (e_value=2e-138) | Symbols: | Peptidase S41 family protein | chr5:18816612-18818605 FORWARD LENGTH=428;; (*ITAG) Solyc02g071190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35251500-35259662 transcript_region:SL2.40ch02:35251500..35259662+ go_terms:GO:0004252 functional_description:"Carboxyl-terminal-processing protease (AHRD V1 ***- B6SPN8_MAIZE); contains Interpro domain(s) IPR004447 Peptidase S41A, C-terminal protease "; GO:0004252 NbS00036349g0009.1 protein AED:0.51 eAED:0.59 QI:0|0|0|0.66|0.5|0.66|3|0|41; (*ITAG) Solyc02g071190.2.1 (e_value=4e-16) genomic_reference:SL2.40ch02 gene_region:35251500-35259662 transcript_region:SL2.40ch02:35251500..35259662+ go_terms:GO:0004252 functional_description:"Carboxyl-terminal-processing protease (AHRD V1 ***- B6SPN8_MAIZE); contains Interpro domain(s) IPR004447 Peptidase S41A, C-terminal protease "; GO:0004252 NbS00005584g0011.1 protein AED:0.24 eAED:0.24 QI:168|1|1|1|1|1|3|582|272; (*GB) gi|47900738|gb|AAT39310.1| (e_value=0.0) 4,5-DOPA dioxygenase extradiol-like protein, putative [Solanum demissum];; (*SWP) sp|Q949R4|DIOXL_ARATH (e_value=3e-123) 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1;; (*TAIR) AT4G15093.1 (e_value=2e-124) | Symbols: | catalytic LigB subunit of aromatic ring-opening dioxygenase family | chr4:8618454-8619472 FORWARD LENGTH=269;; (*ITAG) Solyc11g072550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52818309-52821064 transcript_region:SL2.40ch11:52818309..52821064+ go_terms:GO:0006725,GO:0055114 functional_description:"Extradiol ring-cleavage dioxygenase class III protein subunit B (AHRD V1 ***- B8GF38_METPE); contains Interpro domain(s) IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type "; GO:0006725,GO:0055114 NbS00005584g0013.1 protein AED:0.30 eAED:0.30 QI:0|0.71|0.75|1|0.85|0.87|8|0|474; (*GB) gi|225457901|ref|XP_002271105.1| (e_value=3e-122) PREDICTED: uncharacterized protein LOC100259195 [Vitis vinifera];; (*TAIR) AT1G20110.1 (e_value=8e-110) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc02g062000.2.1 (e_value=8e-162) genomic_reference:SL2.40ch02 gene_region:28157260-28164320 transcript_region:SL2.40ch02:28157260..28164320- go_terms:GO:0005515,GO:0035091 functional_description:"RUN and FYVE domain-containing protein 1 (AHRD V1 *--- B0WS48_CULQU); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00005584g0009.1 protein AED:0.04 eAED:0.04 QI:706|1|1|1|0.25|0.4|5|277|277; (*GB) gi|147766634|emb|CAN71843.1| (e_value=3e-123) hypothetical protein VITISV_036263 [Vitis vinifera];; (*SWP) sp|Q5XF11|FB248_ARATH (e_value=1e-92) F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1;; (*TAIR) AT4G35930.1 (e_value=9e-94) | Symbols: | F-box family protein | chr4:17019482-17020744 FORWARD LENGTH=321;; (*ITAG) Solyc03g033390.2.1 (e_value=1e-147) genomic_reference:SL2.40ch03 gene_region:9242801-9245006 transcript_region:SL2.40ch03:9242801..9245006+ functional_description:"F-box family protein (AHRD V1 *-*- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00051398g0004.1 protein AED:0.47 eAED:0.47 QI:0|0.6|0.16|0.66|0.6|0.83|6|0|141; (*GB) gi|225459158|ref|XP_002285712.1| (e_value=5e-58) PREDICTED: bet1-like protein At4g14600 [Vitis vinifera];; (*SWP) sp|Q8VXX9|BETL1_ARATH (e_value=2e-54) Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1;; (*TAIR) AT4G14600.1 (e_value=1e-55) | Symbols: | Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137;; (*ITAG) Solyc04g074940.2.1 (e_value=1e-76) genomic_reference:SL2.40ch04 gene_region:58422233-58425274 transcript_region:SL2.40ch04:58422233..58425274- go_terms:GO:0005484 functional_description:"Bet1-like protein At4g14600 (AHRD V1 **-- BETL1_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00000941g0015.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|0.33|0.5|4|247|146; (*GB) gi|297734823|emb|CBI17057.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|P41099|RLA2_PARAR (e_value=4e-28) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=2e-25) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc06g074430.2.1 (e_value=2e-37) genomic_reference:SL2.40ch06 gene_region:42457712-42460408 transcript_region:SL2.40ch06:42457712..42460408+ go_terms:GO:0003735 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0003735 NbS00000941g0010.1 protein AED:0.12 eAED:0.15 QI:72|0.70|0.66|0.88|0.94|0.94|18|0|813; (*GB) gi|255565595|ref|XP_002523787.1| (e_value=0.0) poly [ADP-ribose] polymerase, putative [Ricinus communis];; (*SWP) sp|Q9SWB4|PARP3_SOYBN (e_value=0.0) Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1;; (*TAIR) AT5G22470.1 (e_value=0.0) | Symbols: | NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases | chr5:7447045-7450743 FORWARD LENGTH=814;; (*ITAG) Solyc01g009470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:3694546-3698607 transcript_region:SL2.40ch01:3694546..3698607- go_terms:GO:0005634,GO:0006471,GO:0003950,GO:0005622 functional_description:"Poly (AHRD V1 ***- B9SCR8_RICCO); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0005634,GO:0006471,GO:0003950,GO:0005622 NbS00000941g0009.1 protein AED:0.21 eAED:0.21 QI:37|0.6|0.83|0.83|0.2|0.33|6|367|228; (*GB) gi|255572026|ref|XP_002526954.1| (e_value=5e-106) protein with unknown function [Ricinus communis];; (*SWP) sp|P0CQ26|ATP23_CRYNJ (e_value=1e-30) Mitochondrial inner membrane protease ATP23 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATP23 PE=3 SV=1;; (*TAIR) AT3G03420.1 (e_value=9e-99) | Symbols: | Ku70-binding family protein | chr3:812527-813644 FORWARD LENGTH=194;; (*ITAG) Solyc01g009450.2.1 (e_value=4e-106) genomic_reference:SL2.40ch01 gene_region:3676623-3681923 transcript_region:SL2.40ch01:3676623..3681923- go_terms:GO:0004677,GO:0004222 functional_description:"Mitochondrial inner membrane protease ATP23 (AHRD V1 ***- D0NY32_PHYIN); contains Interpro domain(s) IPR019165 Peptidase M76, ATP23 "; GO:0004677,GO:0004222 NbS00000941g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|153; (*GB) gi|156186811|gb|ABU55662.1| (e_value=5e-39) CBF1-like protein [Ampelopsis glandulosa var. brevipedunculata];; (*SWP) sp|Q9FJ93|DRE1D_ARATH (e_value=3e-29) Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1;; (*TAIR) AT5G51990.1 (e_value=2e-30) | Symbols: CBF4, DREB1D | C-repeat-binding factor 4 | chr5:21117113-21117787 REVERSE LENGTH=224;; (*ITAG) Solyc01g009440.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3662862-3663494 transcript_region:SL2.40ch01:3662862..3663494- go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 *-** ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00022704g0005.1 protein AED:0.34 eAED:0.34 QI:55|0.8|0.81|1|1|1|11|337|583; (*GB) gi|18307504|emb|CAD21166.1| (e_value=0.0) SDL-1 protein [Nicotiana plumbaginifolia];; (*TAIR) AT3G08550.1 (e_value=0.0) | Symbols: ELD1, ABI8, KOB1 | elongation defective 1 protein / ELD1 protein | chr3:2596513-2599515 FORWARD LENGTH=533;; (*ITAG) Solyc01g068200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69684919-69691559 transcript_region:SL2.40ch01:69684919..69691559- functional_description:"Abscisic acid insensitive 8 homologue (Fragment) (AHRD V1 *--- A5A6Q3_TRIMO)"; NbS00022704g0017.1 protein AED:0.02 eAED:0.02 QI:862|1|0.8|1|0.75|0.6|5|0|460; (*GB) gi|225449925|ref|XP_002268819.1| (e_value=3e-98) PREDICTED: uncharacterized protein LOC100256816 [Vitis vinifera];; (*TAIR) AT5G13460.1 (e_value=2e-60) | Symbols: IQD11 | IQ-domain 11 | chr5:4316323-4318247 FORWARD LENGTH=443;; (*ITAG) Solyc01g088250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74824669-74827406 transcript_region:SL2.40ch01:74824669..74827406+ go_terms:GO:0005516 functional_description:"IQ-domain 11 (AHRD V1 ***- D7M5A6_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00022704g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|225435999|ref|XP_002273133.1| (e_value=0.0) PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZS34|CHLP_TOBAC (e_value=0.0) Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1;; (*TAIR) AT1G74470.1 (e_value=0.0) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr1:27991248-27992845 FORWARD LENGTH=467;; (*ITAG) Solyc01g088310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74844261-74845854 transcript_region:SL2.40ch01:74844261..74845854+ go_terms:GO:0005515 functional_description:"Geranylgeranyl reductase (AHRD V1 ***- Q09JZ1_BRARP); contains Interpro domain(s) IPR011774 Geranylgeranyl reductase, plants and cyanobacteria "; GO:0005515 NbS00022704g0020.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0.5|0.66|3|0|781; (*GB) gi|296081308|emb|CBI17752.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SVH3|PP328_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=2 SV=1;; (*TAIR) AT4G20740.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:11126151-11128334 FORWARD LENGTH=727;; (*ITAG) Solyc01g068180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69674349-69678637 transcript_region:SL2.40ch01:69674349..69678637+ go_terms:GO:0016020 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MFI7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016020 NbS00022704g0002.1 protein AED:0.21 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|437; (*GB) gi|224114167|ref|XP_002332417.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT5G03990.1 (e_value=2e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1075957-1077358 FORWARD LENGTH=302;; (*ITAG) Solyc01g068170.2.1 (e_value=2e-144) genomic_reference:SL2.40ch01 gene_region:69666092-69671384 transcript_region:SL2.40ch01:69666092..69671384+ functional_description:"Oxidoreductase/ transition metal ion binding protein (AHRD V1 *-*- D7LU03_ARALY)"; NbS00033758g0015.1 protein AED:0.12 eAED:0.16 QI:0|1|0.33|1|0.5|1|3|0|765; (*GB) gi|297744238|emb|CBI37208.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G28690.1 (e_value=3e-32) | Symbols: | BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has 455 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink). | chr4:14159093-14160876 FORWARD LENGTH=448;; (*ITAG) Solyc09g064420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57190374-57199174 transcript_region:SL2.40ch09:57190374..57199174- functional_description:"LOC100158433 protein (Fragment) (AHRD V1 *-*- B1WBD4_XENLA)"; NbS00033758g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.85|0.75|1|1|1|8|356|347; (*GB) gi|225437945|ref|XP_002269637.1| (e_value=2e-155) PREDICTED: tetratricopeptide repeat protein 4 homolog [Vitis vinifera];; (*SWP) sp|Q54M20|TTC4_DICDI (e_value=7e-35) Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1;; (*TAIR) AT1G04130.1 (e_value=3e-145) | Symbols: TPR2, AtTPR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1073465-1075374 FORWARD LENGTH=360;; (*ITAG) Solyc09g064390.2.1 (e_value=4e-121) genomic_reference:SL2.40ch09 gene_region:57159220-57163576 transcript_region:SL2.40ch09:57159220..57163576- go_terms:GO:0005048 functional_description:"Tetratricopeptide repeat protein 4 (AHRD V1 **-- B0WYL6_CULQU); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005048 NbS00033758g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|3|0|169; (*GB) gi|224065519|ref|XP_002301837.1| (e_value=1e-49) ammonium transporter [Populus trichocarpa];; (*SWP) sp|O04161|AMT12_SOLLC (e_value=1e-48) Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1;; (*TAIR) AT3G24290.1 (e_value=9e-48) | Symbols: AMT1;5 | ammonium transporter 1;5 | chr3:8801400-8802890 REVERSE LENGTH=496;; (*ITAG) Solyc04g050440.2.1 (e_value=7e-50) genomic_reference:SL2.40ch04 gene_region:46379169-46382142 transcript_region:SL2.40ch04:46379169..46382142- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9IPE2_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00007503g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.89|0.9|1|0.84|0.85|20|356|746; (*GB) gi|359480159|ref|XP_002276396.2| (e_value=0.0) PREDICTED: protein fat-free homolog [Vitis vinifera];; (*SWP) sp|Q54KG3|FFR_DICDI (e_value=6e-33) Protein fat-free homolog OS=Dictyostelium discoideum GN=ffr PE=3 SV=1;; (*TAIR) AT4G02030.1 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780;; (*ITAG) Solyc06g009650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3588734-3602911 transcript_region:SL2.40ch06:3588734..3602911+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0042802 NbS00007503g0118.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|2|0|747 NbS00007503g0128.1 protein AED:0.16 eAED:0.16 QI:265|0.96|0.96|1|0.92|0.92|28|584|1244 NbS00007503g0129.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.6|1|0.75|0.6|5|357|774 NbS00007503g0102.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|60|465 NbS00007503g0111.1 protein AED:0.27 eAED:0.27 QI:180|0|0.5|1|0|0.5|2|0|145 NbS00007503g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|132 NbS00007503g0126.1 protein AED:0.01 eAED:0.01 QI:416|1|1|1|0.83|0.71|7|249|522 NbS00007503g0130.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0.5|0.33|3|0|836 NbS00038887g0003.1 protein AED:0.33 eAED:0.34 QI:6|1|0|1|1|1|2|0|163; (*GB) gi|58198154|gb|AAW65808.1| (e_value=4e-68) stress regulated protein isoform 2 [Solanum virginianum];; (*TAIR) AT5G27290.2 (e_value=1e-46) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 199 Blast hits to 194 proteins in 57 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:9618787-9620473 REVERSE LENGTH=262;; (*ITAG) Solyc02g090020.2.1 (e_value=3e-70) genomic_reference:SL2.40ch02 gene_region:46272375-46276064 transcript_region:SL2.40ch02:46272375..46276064+ functional_description:"Stress regulated protein isoform 2 (AHRD V1 **-- Q2KP23_9SOLN)"; NbS00014812g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|357465739|ref|XP_003603154.1| (e_value=2e-51) hypothetical protein MTR_3g104460 [Medicago truncatula];; (*TAIR) AT5G11890.1 (e_value=1e-32) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287;; (*ITAG) Solyc08g065140.1.1 (e_value=2e-107) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:50036214-50037008 transcript_region:SL2.40ch08:50036214..50037008- functional_description:"Harpin-induced 1 (AHRD V1 ***- A2Q440_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00030711g0006.1 protein AED:0.54 eAED:0.63 QI:0|0|0.11|0.33|0.62|0.77|9|212|250; (*GB) gi|357501697|ref|XP_003621137.1| (e_value=8e-43) KHG/KDPG aldolase [Medicago truncatula];; (*ITAG) Solyc10g081280.1.1 (e_value=3e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:61721586-61725254 transcript_region:SL2.40ch10:61721586..61725254+ go_terms:GO:0008152 functional_description:"2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (AHRD V1 ***- D3EJ12_GEOS4); contains Interpro domain(s) IPR000887 KDPG and KHG aldolase "; GO:0008152 NbS00030711g0009.1 protein AED:0.26 eAED:0.26 QI:0|1|0.88|1|0.87|0.88|9|206|367; (*GB) gi|225439141|ref|XP_002271601.1| (e_value=1e-163) PREDICTED: ELMO domain-containing protein A [Vitis vinifera];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=1e-26) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G03610.1 (e_value=4e-158) | Symbols: | ELMO/CED-12 family protein | chr3:869479-871687 FORWARD LENGTH=323;; (*ITAG) Solyc10g081270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61716839-61720527 transcript_region:SL2.40ch10:61716839..61720527- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein 3 (AHRD V1 **-- B0WB15_CULQU); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00055034g0006.1 protein AED:0.35 eAED:0.35 QI:252|0.81|0.66|1|0.72|0.83|12|0|538; (*GB) gi|255544910|ref|XP_002513516.1| (e_value=0.0) poly(p)/ATP NAD kinase, putative [Ricinus communis];; (*SWP) sp|Q56YN3|NADK1_ARATH (e_value=0.0) NAD(H) kinase 1 OS=Arabidopsis thaliana GN=NADK1 PE=1 SV=2;; (*TAIR) AT3G21070.2 (e_value=0.0) | Symbols: NADK1 | NAD kinase 1 | chr3:7380434-7383874 REVERSE LENGTH=524;; (*ITAG) Solyc01g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2656473-2664287 transcript_region:SL2.40ch01:2656473..2664287- go_terms:GO:0042736,GO:0005516,GO:0003951 functional_description:"NAD kinase 1 (AHRD V1 **** B6SWV6_MAIZE); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase "; GO:0042736,GO:0005516,GO:0003951 NbS00027127g0006.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|61; (*GB) gi|222640785|gb|EEE68917.1| (e_value=8e-26) hypothetical protein OsJ_27780 [Oryza sativa Japonica Group];; (*SWP) sp|Q38836|AGL11_ARATH (e_value=4e-21) Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=1 SV=1;; (*TAIR) AT1G22130.1 (e_value=5e-24) | Symbols: AGL104 | AGAMOUS-like 104 | chr1:7812387-7814259 REVERSE LENGTH=335;; (*ITAG) Solyc05g051830.2.1 (e_value=1e-33) genomic_reference:SL2.40ch05 gene_region:61378235-61384104 transcript_region:SL2.40ch05:61378235..61384104+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00027127g0005.1 protein AED:0.37 eAED:0.49 QI:0|0|0|0.8|0.66|0.7|10|0|343; (*ITAG) Solyc05g051830.2.1 (e_value=1e-95) genomic_reference:SL2.40ch05 gene_region:61378235-61384104 transcript_region:SL2.40ch05:61378235..61384104+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00055308g0003.1 protein AED:0.24 eAED:0.24 QI:246|1|0.8|1|1|1|5|0|400; (*GB) gi|359472981|ref|XP_003631224.1| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100257723 isoform 2 [Vitis vinifera];; (*TAIR) AT1G68670.1 (e_value=2e-80) | Symbols: | myb-like transcription factor family protein | chr1:25782344-25783873 FORWARD LENGTH=354;; (*ITAG) Solyc05g009720.2.1 (e_value=1e-137) genomic_reference:SL2.40ch05 gene_region:3932222-3934873 transcript_region:SL2.40ch05:3932222..3934873+ go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 **-* Q6Z869_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00026453g0007.1 protein AED:0.09 eAED:0.24 QI:0|0.83|0.57|1|0.83|0.71|7|0|575; (*GB) gi|225445460|ref|XP_002285108.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q2R1M8|RH52C_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1;; (*TAIR) AT3G58570.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21657099-21660352 FORWARD LENGTH=646;; (*ITAG) Solyc01g005960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00026453g0008.1 protein AED:0.27 eAED:0.27 QI:9|0.4|0.33|0.66|0.8|1|6|0|179; (*GB) gi|12230258|sp|Q43582.1|LSM4_TOBAC (e_value=3e-52) RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4; AltName: Full=Glycine-rich protein 10; Short=GRP 10;; (*SWP) sp|Q43582|LSM4_TOBAC (e_value=1e-53) Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G27720.1 (e_value=2e-50) | Symbols: emb1644 | Small nuclear ribonucleoprotein family protein | chr5:9815904-9817304 FORWARD LENGTH=129;; (*ITAG) Solyc01g099740.2.1 (e_value=4e-52) genomic_reference:SL2.40ch01 gene_region:81647861-81661025 transcript_region:SL2.40ch01:81647861..81661025+ functional_description:"Small nuclear ribonucleoprotein sm (AHRD V1 *--- Q17AC0_AEDAE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00025163g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|668; (*GB) gi|124358348|gb|ABG37022.1| (e_value=0.0) serine protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-180) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2149473-2151776 transcript_region:SL2.40ch08:2149473..2151776+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00025163g0007.1 protein AED:0.27 eAED:0.32 QI:0|0|0|0.33|0.6|0.5|6|0|502; (*ITAG) Solyc01g059760.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00025163g0003.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|3183991|emb|CAA06414.1| (e_value=2e-15) P69F protein [Solanum lycopersicum];; (*ITAG) Solyc08g007700.1.1 (e_value=6e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2187646-2189877 transcript_region:SL2.40ch08:2187646..2189877- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00005514g0001.1 protein AED:0.11 eAED:0.15 QI:62|0.8|0.63|0.90|0.6|0.54|11|0|458; (*GB) gi|218201860|gb|EEC84287.1| (e_value=2e-34) hypothetical protein OsI_30760 [Oryza sativa Indica Group];; (*SWP) sp|F4J9Q6|FKB43_ARATH (e_value=5e-24) Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana GN=FKBP43 PE=2 SV=1;; (*TAIR) AT3G12340.1 (e_value=3e-25) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3925720-3929346 REVERSE LENGTH=499;; (*ITAG) Solyc02g005290.2.1 (e_value=4e-57) genomic_reference:SL2.40ch02 gene_region:1881300-1892947 transcript_region:SL2.40ch02:1881300..1892947- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- A2BY00_PROM5); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00020945g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.71|0.66|0.86|0.64|0.73|15|195|622; (*GB) gi|255585712|ref|XP_002533538.1| (e_value=0.0) Multidrug resistance protein, putative [Ricinus communis];; (*SWP) sp|Q9FNU2|AB25B_ORYSJ (e_value=0.0) ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1;; (*TAIR) AT5G39040.1 (e_value=0.0) | Symbols: ALS1, ATTAP2, TAP2 | transporter associated with antigen processing protein 2 | chr5:15625660-15629621 FORWARD LENGTH=644;; (*ITAG) Solyc03g114950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58864908-58870209 transcript_region:SL2.40ch03:58864908..58870209+ go_terms:GO:0042803 functional_description:"Lipid a export ATP-binding/permease protein msba (AHRD V1 ***- Q17P67_AEDAE); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0042803 NbS00007766g0001.1 protein AED:0.12 eAED:0.12 QI:89|1|1|1|1|1|2|309|115; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=4e-56) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=3e-56) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38530.1 (e_value=4e-25) | Symbols: LTP2, LP2, cdf3 | lipid transfer protein 2 | chr2:16128481-16128948 FORWARD LENGTH=118;; (*ITAG) Solyc10g075070.1.1 (e_value=3e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58109657-58110129 transcript_region:SL2.40ch10:58109657..58110129- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00007766g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.16|1|1|1|6|0|394; (*GB) gi|296083173|emb|CBI22809.3| (e_value=3e-176) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01360.1 (e_value=4e-167) | Symbols: TBL3 | Plant protein of unknown function (DUF828) | chr5:147608-149316 REVERSE LENGTH=434;; (*ITAG) Solyc10g076570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58865969-58867855 transcript_region:SL2.40ch10:58865969..58867855- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00012918g0004.1 protein AED:0.14 eAED:0.22 QI:41|0.6|0.36|1|0.6|0.63|11|0|349; (*GB) gi|255574276|ref|XP_002528052.1| (e_value=7e-161) serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-16) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G18950.1 (e_value=3e-62) | Symbols: | Integrin-linked protein kinase family | chr4:10375685-10378129 FORWARD LENGTH=459;; (*ITAG) Solyc02g091170.2.1 (e_value=6e-117) genomic_reference:SL2.40ch02 gene_region:47138670-47142095 transcript_region:SL2.40ch02:47138670..47142095+ go_terms:GO:0004713,GO:0008022 functional_description:"Kinase family protein (AHRD V1 **** D7KBF8_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004713,GO:0008022 NbS00020314g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.9|0.90|1|0.6|0.72|11|0|287; (*GB) gi|21593393|gb|AAM65342.1| (e_value=2e-104) palmitoyl-protein thioesterase precursor-like [Arabidopsis thaliana];; (*SWP) sp|O88531|PPT1_MOUSE (e_value=1e-33) Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=6e-107) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc08g078260.1.1 (e_value=2e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59249310-59252580 transcript_region:SL2.40ch08:59249310..59252580+ go_terms:GO:0008474 functional_description:"Palmitoyl protein thioesterase family protein (AHRD V1 **** D7LRP2_ARALY); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00005942g0011.1 protein AED:0.04 eAED:0.04 QI:140|1|1|1|0.4|0.33|6|535|120; (*GB) gi|350540094|ref|NP_001234639.1| (e_value=2e-73) autophagy 8h [Solanum lycopersicum];; (*SWP) sp|Q9LRP7|ATG8I_ARATH (e_value=2e-63) Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1;; (*TAIR) AT3G15580.1 (e_value=2e-64) | Symbols: ATG8I, APG8H | Ubiquitin-like superfamily protein | chr3:5274075-5275000 REVERSE LENGTH=115;; (*ITAG) Solyc01g068060.2.1 (e_value=4e-76) genomic_reference:SL2.40ch01 gene_region:69474674-69480759 transcript_region:SL2.40ch01:69474674..69480759- go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 ***- A6P6J6_FAGES); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00005942g0007.1 protein AED:0.27 eAED:0.27 QI:89|0.87|0.77|1|0.5|0.66|9|0|419; (*GB) gi|297744039|emb|CBI37009.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NUP7|TRM13_HUMAN (e_value=2e-49) tRNA guanosine-2'-O-methyltransferase TRM13 homolog OS=Homo sapiens GN=CCDC76 PE=1 SV=2;; (*TAIR) AT4G01880.1 (e_value=0.0) | Symbols: | methyltransferases | chr4:810810-812882 REVERSE LENGTH=453;; (*ITAG) Solyc01g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69470003-69474422 transcript_region:SL2.40ch01:69470003..69474422+ go_terms:GO:0008033 functional_description:"tRNA guanosine-2'-O-methyltransferase TRM13 (AHRD V1 ***- TRM13_VANPO); contains Interpro domain(s) IPR007871 Methyltransferase TRM13 "; GO:0008033 NbS00005942g0009.1 protein AED:0.44 eAED:0.66 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|438111|emb|CAA80334.1| (e_value=4e-25) ubiquitin extension protein [Lupinus albus];; (*SWP) sp|P62981|RS27A_SOLTU (e_value=4e-26) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=6e-25) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc12g099030.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64677240-64679496 transcript_region:SL2.40ch12:64677240..64679496+ go_terms:GO:0005840 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005840 NbS00011342g0003.1 protein AED:0.28 eAED:0.29 QI:66|0.85|0.87|1|0.71|0.75|8|399|368; (*GB) gi|225448041|ref|XP_002273537.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246257 [Vitis vinifera];; (*TAIR) AT5G24690.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521;; (*ITAG) Solyc01g104270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84460019-84465624 transcript_region:SL2.40ch01:84460019..84465624+ go_terms:GO:0005524 functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; GO:0005524 NbS00032062g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.62|0.66|1|1|1|9|142|324; (*GB) gi|225443041|ref|XP_002268950.1| (e_value=3e-152) PREDICTED: 8-amino-7-oxononanoate synthase [Vitis vinifera];; (*SWP) sp|A3DBD5|BIOF_CLOTH (e_value=3e-56) Putative 8-amino-7-oxononanoate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bioF PE=3 SV=1;; (*TAIR) AT5G04620.1 (e_value=1e-143) | Symbols: ATBIOF, BIOF | biotin F | chr5:1328004-1329934 FORWARD LENGTH=343;; (*ITAG) Solyc06g034150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00009668g0005.1 protein AED:0.16 eAED:0.16 QI:135|0.90|0.91|1|0.81|0.75|12|738|487; (*GB) gi|297746327|emb|CBI16383.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O51625|MNMA_BORBU (e_value=1e-118) tRNA-specific 2-thiouridylase MnmA OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=mnmA PE=3 SV=1;; (*TAIR) AT1G51310.1 (e_value=0.0) | Symbols: | transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases | chr1:19019185-19021735 REVERSE LENGTH=497;; (*ITAG) Solyc09g074100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61272519-61280465 transcript_region:SL2.40ch09:61272519..61280465- go_terms:GO:0004808 functional_description:"tRNA-specific 2-thiouridylase mnmA (AHRD V1 **** A6DKA8_9BACT); contains Interpro domain(s) IPR018318 tRNA methyl transferase-like "; GO:0004808 NbS00022763g0005.1 protein AED:0.14 eAED:0.14 QI:244|0.6|0.66|1|0.4|0.5|6|239|401; (*GB) gi|225450795|ref|XP_002279542.1| (e_value=2e-154) PREDICTED: uncharacterized protein LOC100251003 [Vitis vinifera];; (*TAIR) AT3G05545.1 (e_value=7e-73) | Symbols: | RING/U-box superfamily protein | chr3:1609436-1612133 FORWARD LENGTH=425;; (*ITAG) Solyc01g099790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81694836-81702099 transcript_region:SL2.40ch01:81694836..81702099+ go_terms:GO:0003677,GO:0004842 functional_description:"AT3G05545 protein (Fragment) (AHRD V1 ***- B9DHH4_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0003677,GO:0004842 NbS00022996g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|431; (*GB) gi|225458686|ref|XP_002282947.1| (e_value=4e-168) PREDICTED: uncharacterized protein LOC100248940 [Vitis vinifera];; (*TAIR) AT5G52010.1 (e_value=1e-162) | Symbols: | C2H2-like zinc finger protein | chr5:21121626-21122816 REVERSE LENGTH=396; NbS00022996g0007.1 protein AED:0.46 eAED:0.46 QI:0|0.25|0|0.8|0.5|0.4|5|0|228; (*GB) gi|296090403|emb|CBI40222.3| (e_value=3e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=2e-32) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2;; (*TAIR) AT1G17500.1 (e_value=1e-33) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023201 FORWARD LENGTH=1216;; (*ITAG) Solyc06g062780.2.1 (e_value=1e-56) genomic_reference:SL2.40ch06 gene_region:35995146-36001096 transcript_region:SL2.40ch06:35995146..36001096+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00026501g0015.1 protein AED:0.06 eAED:0.06 QI:169|0.91|0.84|1|0.75|0.61|13|445|538; (*GB) gi|225462092|ref|XP_002271499.1| (e_value=9e-122) PREDICTED: uncharacterized protein LOC100267010 [Vitis vinifera];; (*SWP) sp|Q93ZG9|FKB53_ARATH (e_value=1e-43) Peptidyl-prolyl cis-trans isomerase FKBP53 OS=Arabidopsis thaliana GN=FKBP53 PE=1 SV=1;; (*TAIR) AT4G25340.1 (e_value=8e-45) | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN 53 | chr4:12959657-12962632 REVERSE LENGTH=477;; (*ITAG) Solyc01g091340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76744237-76752129 transcript_region:SL2.40ch01:76744237..76752129+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q7VAT7_PROMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00026501g0011.1 protein AED:0.22 eAED:0.22 QI:307|0.83|0.85|1|0.83|0.71|7|153|207; (*GB) gi|356505805|ref|XP_003521680.1| (e_value=3e-85) PREDICTED: uncharacterized protein LOC100527010 [Glycine max];; (*TAIR) AT3G60810.2 (e_value=7e-77) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:22470579-22471756 FORWARD LENGTH=209;; (*ITAG) Solyc01g091360.2.1 (e_value=3e-111) genomic_reference:SL2.40ch01 gene_region:76760306-76762718 transcript_region:SL2.40ch01:76760306..76762718+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00VP3_OSTTA); contains Interpro domain(s) IPR010865 Protein of unknown function DUF1499 "; NbS00026501g0002.1 protein AED:0.14 eAED:0.14 QI:236|1|1|1|0.72|0.83|12|448|711; (*GB) gi|359489412|ref|XP_002273349.2| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like [Vitis vinifera];; (*SWP) sp|Q9FQ09|KU80_ARATH (e_value=0.0) ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana GN=KU80 PE=1 SV=1;; (*TAIR) AT1G48050.1 (e_value=0.0) | Symbols: KU80, ATKU80 | Ku80 family protein | chr1:17723498-17726859 FORWARD LENGTH=680;; (*ITAG) Solyc01g091350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76753032-76759212 transcript_region:SL2.40ch01:76753032..76759212- go_terms:GO:0003691 functional_description:"ATP-dependent DNA helicase 2 subunit KU80 (AHRD V1 **-* KU80_ARATH); contains Interpro domain(s) IPR016194 Spen Paralogue and Orthologue C-terminal-like "; GO:0003691 NbS00026501g0012.1 protein AED:0.59 eAED:0.59 QI:0|1|0|1|1|0.5|2|0|64; (*GB) gi|359489410|ref|XP_002273301.2| (e_value=2e-20) PREDICTED: glutathione S-transferase zeta class-like [Vitis vinifera];; (*TAIR) AT2G02380.1 (e_value=1e-14) | Symbols: ATGSTZ2, GSTZ2 | glutathione S-transferase (class zeta) 2 | chr2:626878-628569 FORWARD LENGTH=223;; (*ITAG) Solyc01g091330.2.1 (e_value=7e-26) genomic_reference:SL2.40ch01 gene_region:76737024-76743229 transcript_region:SL2.40ch01:76737024..76743229- go_terms:GO:0005737 functional_description:"Maleylacetoacetate isomerase/glutathione S-transferase (AHRD V1 ***- C9Q4X6_9VIBR); contains Interpro domain(s) IPR005955 Maleylacetoacetate isomerase "; GO:0005737 NbS00026501g0018.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.83|0|0|6|0|170; (*GB) gi|255541314|ref|XP_002511721.1| (e_value=3e-50) glutathione-s-transferase theta, gst, putative [Ricinus communis];; (*SWP) sp|P57108|GSTZ_EUPES (e_value=3e-37) Glutathione S-transferase zeta class OS=Euphorbia esula PE=2 SV=1;; (*TAIR) AT2G02390.2 (e_value=6e-36) | Symbols: ATGSTZ1, GST18, GSTZ1 | glutathione S-transferase zeta 1 | chr2:629015-630607 FORWARD LENGTH=191;; (*ITAG) Solyc01g091330.2.1 (e_value=4e-87) genomic_reference:SL2.40ch01 gene_region:76737024-76743229 transcript_region:SL2.40ch01:76737024..76743229- go_terms:GO:0005737 functional_description:"Maleylacetoacetate isomerase/glutathione S-transferase (AHRD V1 ***- C9Q4X6_9VIBR); contains Interpro domain(s) IPR005955 Maleylacetoacetate isomerase "; GO:0005737 NbS00000824g0008.1 protein AED:0.11 eAED:0.11 QI:55|0.66|0.25|1|1|0.75|4|0|78; (*GB) gi|224077276|ref|XP_002305197.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GW20|Y5390_ARATH (e_value=1e-32) Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=1 SV=2;; (*TAIR) AT5G03900.1 (e_value=4e-34) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1048338-1050999 FORWARD LENGTH=429;; (*ITAG) Solyc04g049130.2.1 (e_value=1e-38) genomic_reference:SL2.40ch04 gene_region:38898121-38915942 transcript_region:SL2.40ch04:38898121..38915942+ functional_description:"At5g03900 (Fragment) (AHRD V1 *-*- B0LQ56_ARATH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; NbS00000824g0006.1 protein AED:0.27 eAED:0.63 QI:54|0|0|0.66|1|0.66|3|0|70 NbS00000824g0007.1 protein AED:0.33 eAED:0.33 QI:65|0.4|0.66|1|0.6|0.66|6|109|255; (*GB) gi|225425821|ref|XP_002264828.1| (e_value=3e-103) PREDICTED: proteasome subunit beta type-5 [Vitis vinifera];; (*SWP) sp|O24361|PSB5_SPIOL (e_value=1e-98) Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G26340.1 (e_value=7e-98) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:9650600-9652572 REVERSE LENGTH=273;; (*ITAG) Solyc05g056160.2.1 (e_value=3e-116) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00026611g0004.1 protein AED:0.09 eAED:0.11 QI:0|0.5|0.2|1|0.75|0.6|5|0|296; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=1e-150) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=9e-123) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=7e-124) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g047740.2.1 (e_value=2e-160) genomic_reference:SL2.40ch07 gene_region:56275239-56276936 transcript_region:SL2.40ch07:56275239..56276936+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00026470g0011.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|1|1|2|0|808; (*GB) gi|356527151|ref|XP_003532176.1| (e_value=3e-48) PREDICTED: uncharacterized protein LOC100813702 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=1e-42) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065510.2.1 (e_value=5e-50) genomic_reference:SL2.40ch07 gene_region:64458536-64462192 transcript_region:SL2.40ch07:64458536..64462192- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA binding protein (AHRD V1 *-*- B7SDF0_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00026470g0021.1 protein AED:0.11 eAED:0.11 QI:131|0.83|0.84|1|0.58|0.61|13|285|598; (*GB) gi|356566449|ref|XP_003551444.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100817467 [Glycine max];; (*TAIR) AT5G55660.1 (e_value=5e-35) | Symbols: | DEK domain-containing chromatin associated protein | chr5:22539375-22543142 FORWARD LENGTH=778;; (*ITAG) Solyc10g006000.2.1 (e_value=5e-75) genomic_reference:SL2.40ch10 gene_region:756753-762127 transcript_region:SL2.40ch10:756753..762127- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00026470g0014.1 protein AED:0.42 eAED:0.58 QI:0|0|0|1|1|1|2|0|171 NbS00026470g0013.1 protein AED:0.44 eAED:0.58 QI:0|0|0|1|1|1|2|0|124; (*GB) gi|255563580|ref|XP_002522792.1| (e_value=6e-23) Neighbor of COX4, putative [Ricinus communis];; (*SWP) sp|Q9FG71|U172_ARATH (e_value=8e-22) UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1;; (*TAIR) AT5G55940.1 (e_value=6e-23) | Symbols: emb2731 | Uncharacterised protein family (UPF0172) | chr5:22656256-22657894 REVERSE LENGTH=208;; (*ITAG) Solyc10g005780.2.1 (e_value=2e-34) genomic_reference:SL2.40ch10 gene_region:623550-627411 transcript_region:SL2.40ch10:623550..627411- go_terms:GO:0005515 functional_description:"Neighbor of COX4 (AHRD V1 ***- D3PHS4_9MAXI); contains Interpro domain(s) IPR005366 Uncharacterised protein family UPF0172 "; GO:0005515 NbS00000990g0003.1 protein AED:0.45 eAED:0.58 QI:0|0|0.25|0.5|1|1|4|0|81; (*GB) gi|356555439|ref|XP_003546039.1| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100781055 [Glycine max];; (*TAIR) AT1G15370.1 (e_value=7e-18) | Symbols: | SNARE-like superfamily protein | chr1:5287135-5288375 FORWARD LENGTH=147;; (*ITAG) Solyc11g008330.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2530730-2532334 transcript_region:SL2.40ch11:2530730..2532334+ go_terms:GO:0006810 functional_description:"Zeta2-COP (AHRD V1 **-- A8JHN4_CHLRE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00004109g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.25|0.75|0.33|0.25|4|0|198; (*GB) gi|6855476|dbj|BAA90481.1| (e_value=1e-63) phytocyanin-related protein [Ipomoea nil];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=1e-40) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT4G31840.1 (e_value=1e-46) | Symbols: ENODL15, AtENODL15 | early nodulin-like protein 15 | chr4:15401798-15402426 FORWARD LENGTH=177;; (*ITAG) Solyc08g006790.2.1 (e_value=2e-83) genomic_reference:SL2.40ch08 gene_region:1346646-1348052 transcript_region:SL2.40ch08:1346646..1348052- go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00004109g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.33|1|1|3|0|271; (*GB) gi|255559352|ref|XP_002520696.1| (e_value=1e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G10660.1 (e_value=2e-16) | Symbols: | CDC68-related | chr4:6582535-6583488 FORWARD LENGTH=317;; (*ITAG) Solyc09g074390.1.1 (e_value=3e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61685587-61687468 transcript_region:SL2.40ch09:61685587..61687468+ functional_description:"F-box family protein (AHRD V1 *-*- D7LFQ7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006220g0013.1 protein AED:0.15 eAED:0.16 QI:0|0.64|0.38|1|0.58|0.72|18|0|945; (*GB) gi|225433682|ref|XP_002265776.1| (e_value=0.0) PREDICTED: fanconi-associated nuclease 1 homolog [Vitis vinifera];; (*SWP) sp|Q5XVJ4|FAN1_ARATH (e_value=0.0) Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana GN=At1g48360 PE=2 SV=2;; (*TAIR) AT1G48360.2 (e_value=0.0) | Symbols: | zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides | chr1:17868661-17872946 FORWARD LENGTH=891;; (*ITAG) Solyc09g098370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67473224-67484653 transcript_region:SL2.40ch09:67473224..67484653+ go_terms:GO:0005515 functional_description:"VRR-NUC domain-containing protein (AHRD V1 ***- C5GD44_AJEDR); contains Interpro domain(s) IPR014883 VRR-NUC "; GO:0005515 NbS00006220g0015.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|8|0|259; (*GB) gi|255586521|ref|XP_002533899.1| (e_value=8e-164) TGF-beta-inducible nuclear protein, putative [Ricinus communis];; (*SWP) sp|Q54GN8|NSA2_DICDI (e_value=6e-132) Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1;; (*TAIR) AT5G06360.1 (e_value=1e-158) | Symbols: | Ribosomal protein S8e family protein | chr5:1944835-1946512 FORWARD LENGTH=260;; (*ITAG) Solyc09g098360.2.1 (e_value=4e-172) genomic_reference:SL2.40ch09 gene_region:67468841-67472791 transcript_region:SL2.40ch09:67468841..67472791+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosome biogenesis protein NSA2 (AHRD V1 **** D0MUX0_PHYIN); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00006220g0002.1 protein AED:0.20 eAED:0.20 QI:532|0.87|0.88|1|0.87|0.88|9|0|411; (*GB) gi|225433684|ref|XP_002266620.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=3e-26) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT5G56190.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441;; (*ITAG) Solyc09g098330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67447770-67454617 transcript_region:SL2.40ch09:67447770..67454617- functional_description:"WD-repeat protein-like (AHRD V1 ***- Q8LG28_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00017754g0002.1 protein AED:0.24 eAED:0.24 QI:255|0.84|0.71|1|1|1|14|0|392; (*GB) gi|255581842|ref|XP_002531721.1| (e_value=0.0) hydroxypyruvate reductase, putative [Ricinus communis];; (*SWP) sp|P13443|DHGY_CUCSA (e_value=0.0) Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1;; (*TAIR) AT1G68010.1 (e_value=0.0) | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase | chr1:25493418-25495720 FORWARD LENGTH=386;; (*ITAG) Solyc01g111630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89609244-89612993 transcript_region:SL2.40ch01:89609244..89612993+ go_terms:GO:0008266,GO:0030267 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **** GHRB_YERPS); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008266,GO:0030267 NbS00017754g0006.1 protein AED:0.41 eAED:0.47 QI:0|0|0|1|1|1|2|0|68 NbS00017754g0008.1 protein AED:0.11 eAED:0.11 QI:230|1|1|1|1|1|2|270|390; (*GB) gi|167857805|gb|ACA03877.1| (e_value=2e-122) chloroplast zebra-necrosis protein [Nicotiana benthamiana];; (*TAIR) AT2G16800.1 (e_value=2e-103) | Symbols: | high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372;; (*ITAG) Solyc01g111620.2.1 (e_value=2e-154) genomic_reference:SL2.40ch01 gene_region:89600618-89604371 transcript_region:SL2.40ch01:89600618..89604371- go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00008610g0003.1 protein AED:0.11 eAED:0.11 QI:107|1|1|1|0.5|0.6|5|441|354; (*GB) gi|356526067|ref|XP_003531641.1| (e_value=0.0) PREDICTED: GDSL esterase/lipase APG-like [Glycine max];; (*SWP) sp|Q9LU14|APG2_ARATH (e_value=0.0) GDSL esterase/lipase APG OS=Arabidopsis thaliana GN=APG PE=1 SV=1;; (*TAIR) AT3G16370.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:5556928-5558351 FORWARD LENGTH=353;; (*ITAG) Solyc03g121180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63413348-63415519 transcript_region:SL2.40ch03:63413348..63415519- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g22810 (AHRD V1 ***- GDL78_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00026922g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|426; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=0.0) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=2e-170) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g065600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31340580-31343502 transcript_region:SL2.40ch02:31340580..31343502- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026922g0012.1 protein AED:0.19 eAED:0.19 QI:186|0.85|0.87|1|0.57|0.62|8|212|465; (*GB) gi|359488305|ref|XP_002279145.2| (e_value=4e-126) PREDICTED: uncharacterized protein LOC100256612 [Vitis vinifera];; (*SWP) sp|O04251|Y4211_ARATH (e_value=7e-15) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT1G67180.1 (e_value=2e-106) | Symbols: | zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein | chr1:25130099-25132169 FORWARD LENGTH=453;; (*ITAG) Solyc02g065620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31359577-31366020 transcript_region:SL2.40ch02:31359577..31366020- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 **-- D7KV04_ARALY); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00026922g0005.1 protein AED:0.33 eAED:0.34 QI:0|0.75|0.4|0.8|1|1|5|0|468; (*GB) gi|225451915|ref|XP_002282805.1| (e_value=1e-124) PREDICTED: uncharacterized protein LOC100244706 [Vitis vinifera];; (*TAIR) AT1G67170.1 (e_value=3e-79) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). | chr1:25127727-25129145 FORWARD LENGTH=359;; (*ITAG) Solyc02g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31367891-31374079 transcript_region:SL2.40ch02:31367891..31374079- functional_description:"Myosin-like protein (AHRD V1 *--- Q9C717_ARATH)"; NbS00060175g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.6|1|1|1|5|393|262; (*GB) gi|42491254|dbj|BAD10939.1| (e_value=0.0) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93784|14335_SOLTU (e_value=0.0) 14-3-3-like protein 16R OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=3e-165) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g012120.2.1 (e_value=2e-175) genomic_reference:SL2.40ch04 gene_region:4428571-4430128 transcript_region:SL2.40ch04:4428571..4430128- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00029070g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|286; (*GB) gi|225447731|ref|XP_002277858.1| (e_value=3e-153) PREDICTED: (+)-neomenthol dehydrogenase [Vitis vinifera];; (*SWP) sp|P48758|CBR1_MOUSE (e_value=6e-64) Carbonyl reductase [NADPH] 1 OS=Mus musculus GN=Cbr1 PE=1 SV=3;; (*TAIR) AT5G51030.1 (e_value=2e-147) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314;; (*ITAG) Solyc12g042370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42989836-42992500 transcript_region:SL2.40ch12:42989836..42992500- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 *-*- DHRS7_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00029070g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|504; (*GB) gi|225456517|ref|XP_002281018.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=2e-129) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=2e-130) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc12g042400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:43112155-43114035 transcript_region:SL2.40ch12:43112155..43114035- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00029070g0002.1 protein AED:0.19 eAED:0.19 QI:250|1|1|1|0.75|0.6|5|300|466; (*GB) gi|359491145|ref|XP_002284739.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243857 [Vitis vinifera];; (*TAIR) AT5G61820.1 (e_value=2e-160) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc12g042380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43016137-43018348 transcript_region:SL2.40ch12:43016137..43018348+ functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00018145g0008.1 protein AED:0.13 eAED:0.13 QI:316|0.92|1|1|1|1|14|506|494; (*GB) gi|2598603|emb|CAA05329.1| (e_value=0.0) shaggy-like kinase 59 [Nicotiana tabacum];; (*SWP) sp|Q96287|KSG8_ARATH (e_value=0.0) Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3;; (*TAIR) AT4G00720.1 (e_value=0.0) | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like protein kinase 32 | chr4:294116-297002 REVERSE LENGTH=472;; (*ITAG) Solyc05g051050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60379685-60383579 transcript_region:SL2.40ch05:60379685..60383579- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** Q1AMT7_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00018145g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.6|0.66|0.83|1|1|6|389|353; (*GB) gi|225453720|ref|XP_002271690.1| (e_value=1e-148) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=9e-122) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT4G11680.1 (e_value=7e-123) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr4:7053737-7055516 REVERSE LENGTH=390;; (*ITAG) Solyc05g051040.2.1 (e_value=3e-177) genomic_reference:SL2.40ch05 gene_region:60372696-60378405 transcript_region:SL2.40ch05:60372696..60378405- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00018145g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|0.66|0|0|3|0|79 NbS00054082g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|200; (*GB) gi|56549227|gb|AAV97731.1| (e_value=1e-51) lipid transfer protein [Capsicum annuum];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=4e-14) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=1e-33) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g082280.2.1 (e_value=5e-54) genomic_reference:SL2.40ch09 gene_region:63458128-63460205 transcript_region:SL2.40ch09:63458128..63460205- functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q5MJA5_CAPAN); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00034808g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|255546113|ref|XP_002514116.1| (e_value=5e-27) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g039380.2.1 (e_value=5e-45) genomic_reference:SL2.40ch07 gene_region:44659424-44660201 transcript_region:SL2.40ch07:44659424..44660201+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042560g0011.1 protein AED:0.21 eAED:0.21 QI:462|1|0.66|1|0.5|0.66|3|0|68; (*GB) gi|357449949|ref|XP_003595251.1| (e_value=1e-33) Serine/threonine protein kinase [Medicago truncatula];; (*SWP) sp|Q9NBK5|TRC_DROME (e_value=3e-18) Serine/threonine-protein kinase tricorner OS=Drosophila melanogaster GN=trc PE=1 SV=1;; (*TAIR) AT4G33080.1 (e_value=4e-33) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=519;; (*ITAG) Solyc08g062670.2.1 (e_value=1e-39) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00042560g0001.1 protein AED:0.19 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|572; (*GB) gi|225429570|ref|XP_002280033.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262760 [Vitis vinifera];; (*SWP) sp|B0BN95|HARB1_RAT (e_value=7e-21) Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1;; (*TAIR) AT5G12010.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc07g040960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00058604g0005.1 protein AED:0.24 eAED:0.24 QI:467|0.91|0.96|1|0.87|0.8|25|582|866; (*GB) gi|359482613|ref|XP_002284773.2| (e_value=0.0) PREDICTED: coatomer subunit beta'-2-like [Vitis vinifera];; (*SWP) sp|Q9C827|COB22_ARATH (e_value=0.0) Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1;; (*TAIR) AT1G52360.1 (e_value=0.0) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc06g066730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38308380-38319373 transcript_region:SL2.40ch06:38308380..38319373+ go_terms:GO:0005080,GO:0016286 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- Q0CXS2_ASPTN); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0005080,GO:0016286 NbS00021916g0001.1 protein AED:0.00 eAED:0.45 QI:245|0|0.5|1|0|0.5|2|355|69; (*GB) gi|356513423|ref|XP_003525413.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100805083 [Glycine max];; (*TAIR) AT3G48660.1 (e_value=5e-35) | Symbols: | Protein of unknown function (DUF 3339) | chr3:18029659-18030133 FORWARD LENGTH=89;; (*ITAG) Solyc03g019700.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:6644930-6645139 transcript_region:SL2.40ch03:6644930..6645139+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00047333g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.75|0|0|4|0|101; (*GB) gi|400750|sp|Q02200.1|PERX_NICSY (e_value=7e-34) RecName: Full=Lignin-forming anionic peroxidase; Flags: Precursor;; (*SWP) sp|Q02200|PERX_NICSY (e_value=2e-35) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT4G36430.1 (e_value=2e-27) | Symbols: | Peroxidase superfamily protein | chr4:17204648-17205917 REVERSE LENGTH=331;; (*ITAG) Solyc11g018800.1.1 (e_value=4e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00011740g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|94; (*ITAG) Solyc07g032700.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00011740g0012.1 protein AED:0.22 eAED:0.22 QI:215|0.85|0.87|1|0.85|0.75|8|482|250; (*GB) gi|224091690|ref|XP_002309329.1| (e_value=5e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT4G30993.2 (e_value=8e-46) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:15098201-15099935 FORWARD LENGTH=285;; (*ITAG) Solyc12g010230.1.1 (e_value=7e-123) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3342181-3346441 transcript_region:SL2.40ch12:3342181..3346441+ functional_description:"Os06g0183700 protein (Fragment) (AHRD V1 *-*- Q0DE22_ORYSJ)"; NbS00011740g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|228; (*GB) gi|188509941|gb|ACD56627.1| (e_value=1e-131) putative ABC transporter [Gossypium raimondii];; (*SWP) sp|Q9C8T1|AB1I_ARATH (e_value=6e-132) ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1;; (*TAIR) AT1G63270.1 (e_value=5e-133) | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229;; (*ITAG) Solyc12g010220.1.1 (e_value=1e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3340222-3340911 transcript_region:SL2.40ch12:3340222..3340911+ go_terms:GO:0030288,GO:0017111,GO:0016887 functional_description:"Cytochrome c biogenesis ATP-binding export protein ccmA-like (AHRD V1 ***- B6U3M9_MAIZE); contains Interpro domain(s) IPR005895 ABC transporter, haem export, CcmA "; GO:0030288,GO:0017111,GO:0016887 NbS00019018g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|176 NbS00019018g0007.1 protein AED:0.23 eAED:0.23 QI:367|0.84|0.9|1|0.73|0.7|20|316|768; (*GB) gi|225435331|ref|XP_002285194.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like [Vitis vinifera];; (*SWP) sp|Q5F471|PP6R3_CHICK (e_value=5e-68) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus GN=PPP6R3 PE=2 SV=1;; (*TAIR) AT3G45190.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr3:16541994-16548161 REVERSE LENGTH=789;; (*ITAG) Solyc06g075160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43026955-43036498 transcript_region:SL2.40ch06:43026955..43036498- functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 *--- SAPS3_HUMAN); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00019018g0002.1 protein AED:0.56 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|119; (*TAIR) AT5G42300.1 (e_value=1e-13) | Symbols: UBL5 | ubiquitin-like protein 5 | chr5:16913611-16913832 REVERSE LENGTH=73; NbS00040074g0009.1 protein AED:0.04 eAED:0.05 QI:0|1|0.75|1|0.66|0.75|4|391|260; (*GB) gi|147777784|emb|CAN75733.1| (e_value=7e-126) hypothetical protein VITISV_030147 [Vitis vinifera];; (*SWP) sp|Q32L00|ALKB3_BOVIN (e_value=6e-25) Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1;; (*TAIR) AT2G22260.1 (e_value=3e-119) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr2:9461342-9463053 FORWARD LENGTH=314;; (*ITAG) Solyc04g015080.2.1 (e_value=3e-115) genomic_reference:SL2.40ch04 gene_region:5267687-5270849 transcript_region:SL2.40ch04:5267687..5270849+ go_terms:GO:0051747 functional_description:"Alkylated DNA repair protein (AHRD V1 **** A6EGN8_9SPHI)"; GO:0051747 NbS00040074g0011.1 protein AED:0.25 eAED:0.25 QI:0|1|0.33|1|0|0.66|3|0|141; (*GB) gi|225469943|ref|XP_002275013.1| (e_value=8e-58) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Vitis vinifera];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-28) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT5G47710.2 (e_value=2e-56) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:19330470-19331178 FORWARD LENGTH=166;; (*ITAG) Solyc04g015070.2.1 (e_value=2e-72) genomic_reference:SL2.40ch04 gene_region:5263062-5264993 transcript_region:SL2.40ch04:5263062..5264993+ functional_description:"C2 domain containing protein (AHRD V1 **-- Q2A9R2_BRAOL); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00040074g0013.1 protein AED:0.35 eAED:0.35 QI:35|0.76|0.57|1|0.76|0.64|14|0|382; (*GB) gi|53854352|gb|AAU95619.1| (e_value=0.0) peroxisomal acetoacetyl-coenzyme A thiolase [Nicotiana tabacum];; (*SWP) sp|Q9FIK7|THIC2_ARATH (e_value=0.0) Probable acetyl-CoA acetyltransferase, cytosolic 2 OS=Arabidopsis thaliana GN=At5g47720 PE=2 SV=1;; (*TAIR) AT5G47720.4 (e_value=0.0) | Symbols: | Thiolase family protein | chr5:19331762-19334145 FORWARD LENGTH=415;; (*ITAG) Solyc04g015100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5276509-5281855 transcript_region:SL2.40ch04:5276509..5281855+ go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase protein (AHRD V1 **** D3YN47_9ERIC); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00012114g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0.2|0.6|0.5|0|5|0|367; (*GB) gi|224141311|ref|XP_002324017.1| (e_value=5e-132) predicted protein [Populus trichocarpa];; (*TAIR) AT3G28150.1 (e_value=6e-106) | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22 | chr3:10471960-10473735 REVERSE LENGTH=414;; (*ITAG) Solyc02g087120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44203005-44205498 transcript_region:SL2.40ch02:44203005..44205498- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q67V99_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00012114g0014.1 protein AED:0.38 eAED:0.42 QI:0|0|0|0.66|0.2|0.33|6|0|192; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-29) hypothetical protein [Nicotiana tabacum]; NbS00012114g0006.1 protein AED:0.09 eAED:0.09 QI:116|1|1|1|0.77|0.9|10|222|639; (*GB) gi|12539609|gb|AAG59584.1|AF229926_1 (e_value=0.0) pathogen-inducible alpha-dioxygenase [Nicotiana attenuata];; (*TAIR) AT3G01420.1 (e_value=0.0) | Symbols: ALPHA-DOX1, DOX1, DIOX1, PADOX-1 | Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639;; (*ITAG) Solyc02g087070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44177797-44181526 transcript_region:SL2.40ch02:44177797..44181526+ go_terms:GO:0016165 functional_description:"Peroxidase family protein (AHRD V1 **-- Q1D1V4_MYXXD); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016165 NbS00012114g0012.1 protein AED:0.10 eAED:0.10 QI:569|0.33|0.5|1|0.66|0.5|4|0|628; (*GB) gi|255552680|ref|XP_002517383.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9LJP4|CSLC4_ARATH (e_value=0.0) Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1;; (*TAIR) AT3G28180.1 (e_value=0.0) | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellulose-synthase-like C4 | chr3:10506110-10509067 FORWARD LENGTH=673;; (*ITAG) Solyc02g089640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45969254-45972519 transcript_region:SL2.40ch02:45969254..45972519- go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML)"; GO:0016759 NbS00001554g0007.1 protein AED:0.02 eAED:0.03 QI:202|0.83|0.71|1|0.83|0.71|7|0|231; (*GB) gi|118486587|gb|ABK95132.1| (e_value=1e-100) unknown [Populus trichocarpa];; (*SWP) sp|A6BM06|ACCO1_DICMU (e_value=1e-22) 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1;; (*TAIR) AT4G16770.1 (e_value=6e-77) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9434571-9437168 REVERSE LENGTH=325;; (*ITAG) Solyc06g060800.2.1 (e_value=6e-130) genomic_reference:SL2.40ch06 gene_region:35217666-35228843 transcript_region:SL2.40ch06:35217666..35228843- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase (AHRD V1 **-* D7FYW8_ECTSI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00001554g0008.1 protein AED:0.21 eAED:0.31 QI:0|0|0|1|0|0.5|2|0|47; (*GB) gi|296085698|emb|CBI29497.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G16765.1 (e_value=3e-17) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9429974-9431791 REVERSE LENGTH=247;; (*ITAG) Solyc06g060800.2.1 (e_value=2e-25) genomic_reference:SL2.40ch06 gene_region:35217666-35228843 transcript_region:SL2.40ch06:35217666..35228843- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase (AHRD V1 **-* D7FYW8_ECTSI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00013937g0002.1 protein AED:0.23 eAED:0.29 QI:335|0.16|0.14|0.57|1|1|7|0|246; (*GB) gi|225453588|ref|XP_002263524.1| (e_value=2e-49) PREDICTED: uncharacterized protein LOC100262678 [Vitis vinifera];; (*TAIR) AT4G00850.1 (e_value=8e-32) | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357675-358928 FORWARD LENGTH=223;; (*ITAG) Solyc10g009280.2.1 (e_value=5e-69) genomic_reference:SL2.40ch10 gene_region:3267235-3271023 transcript_region:SL2.40ch10:3267235..3271023- go_terms:GO:0003713 functional_description:"Calcium-responsive transcription coactivator (AHRD V1 *--* CREST_RAT); contains Interpro domain(s) IPR007726 SSXT "; GO:0003713 NbS00013003g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|6|0|550; (*GB) gi|310813973|gb|ADP30798.1| (e_value=0.0) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-99) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-100) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=9e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00026027g0004.1 protein AED:0.03 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|898; (*GB) gi|147818682|emb|CAN76185.1| (e_value=0.0) hypothetical protein VITISV_023086 [Vitis vinifera];; (*SWP) sp|Q94AH8|TPS6_ARATH (e_value=0.0) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6 PE=1 SV=2;; (*TAIR) AT1G68020.2 (e_value=0.0) | Symbols: ATTPS6, TPS6 | UDP-Glycosyltransferase / trehalose-phosphatase family protein | chr1:25497493-25500241 FORWARD LENGTH=860;; (*ITAG) Solyc01g005210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:165134-169351 transcript_region:SL2.40ch01:165134..169351+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00015676g0004.1 protein AED:0.05 eAED:0.29 QI:0|0.5|0|1|0|0|3|0|184; (*GB) gi|255561675|ref|XP_002521847.1| (e_value=9e-22) Armadillo repeat-containing protein, putative [Ricinus communis];; (*TAIR) AT4G33940.1 (e_value=2e-22) | Symbols: | RING/U-box superfamily protein | chr4:16266085-16267612 FORWARD LENGTH=262;; (*ITAG) Solyc01g103970.2.1 (e_value=5e-58) genomic_reference:SL2.40ch01 gene_region:84211290-84214938 transcript_region:SL2.40ch01:84211290..84214938+ go_terms:GO:0008270 functional_description:"RING finger protein 170 (AHRD V1 ***- C1BQ68_9MAXI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00051757g0004.1 protein AED:0.19 eAED:0.19 QI:471|1|1|1|0.4|0.5|6|1038|341; (*GB) gi|297742667|emb|CBI34816.3| (e_value=4e-97) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=7e-80) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g079630.2.1 (e_value=4e-113) genomic_reference:SL2.40ch08 gene_region:60275702-60280510 transcript_region:SL2.40ch08:60275702..60280510- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00051757g0005.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|88; (*GB) gi|225470287|ref|XP_002266482.1| (e_value=6e-27) PREDICTED: general transcription factor IIH subunit 5 [Vitis vinifera];; (*TAIR) AT1G12400.1 (e_value=1e-25) | Symbols: | Nucleotide excision repair, TFIIH, subunit TTDA | chr1:4222296-4222603 FORWARD LENGTH=71;; (*ITAG) Solyc08g079610.2.1 (e_value=8e-36) genomic_reference:SL2.40ch08 gene_region:60268153-60268983 transcript_region:SL2.40ch08:60268153..60268983+ go_terms:GO:0006289 functional_description:"General transcription factor IIH subunit 5 (AHRD V1 ***- C1BY42_ESOLU); contains Interpro domain(s) IPR009400 Nucleotide excision repair, TFIIH, subunit TTDA "; GO:0006289 NbS00040307g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|2|425|288; (*GB) gi|255564703|ref|XP_002523346.1| (e_value=3e-111) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O32107|YUID_BACSU (e_value=3e-25) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT3G61770.1 (e_value=4e-109) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:22864635-22866248 FORWARD LENGTH=284;; (*ITAG) Solyc01g095980.2.1 (e_value=2e-164) genomic_reference:SL2.40ch01 gene_region:78856552-78860045 transcript_region:SL2.40ch01:78856552..78860045+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 *--- A4XKK1_CALS8); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00019023g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.55|0.77|1|1|9|243|504; (*GB) gi|255583177|ref|XP_002532354.1| (e_value=4e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16807.1 (e_value=6e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G33528.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9457317-9459358 REVERSE LENGTH=439;; (*ITAG) Solyc06g060860.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35266773-35269909 transcript_region:SL2.40ch06:35266773..35269909- functional_description:"Unknown Protein (AHRD V1)"; NbS00019023g0008.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|0.66|0.75|4|0|270 NbS00002837g0001.1 protein AED:0.25 eAED:0.25 QI:589|0.75|0.8|1|0|0.4|5|0|646; (*GB) gi|113205231|gb|AAT39303.2| (e_value=0.0) Myosin heavy chain-like protein, putative [Solanum demissum];; (*SWP) sp|Q9LSS5|ICR3_ARATH (e_value=8e-119) Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1;; (*TAIR) AT5G60210.2 (e_value=6e-120) | Symbols: RIP5 | ROP interactive partner 5 | chr5:24243529-24245889 REVERSE LENGTH=564;; (*ITAG) Solyc11g072490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52765942-52769984 transcript_region:SL2.40ch11:52765942..52769984+ functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00008390g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.77|1|0.62|0.66|9|1344|588; (*GB) gi|255545546|ref|XP_002513833.1| (e_value=0.0) Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q39008|M3K1_ARATH (e_value=4e-135) Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2;; (*TAIR) AT4G08500.1 (e_value=3e-136) | Symbols: MEKK1, ATMEKK1, MAPKKK8, ARAKIN | MAPK/ERK kinase kinase 1 | chr4:5404272-5407062 REVERSE LENGTH=608;; (*ITAG) Solyc07g053170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58941217-58949834 transcript_region:SL2.40ch07:58941217..58949834- go_terms:GO:0019900,GO:0004709 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019900,GO:0004709 NbS00052185g0003.1 protein AED:0.10 eAED:0.10 QI:223|1|1|1|0.85|0.87|8|317|443; (*GB) gi|365222866|gb|AEW69785.1| (e_value=0.0) Hop-interacting protein THI012 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=0.0) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=0.0) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc11g066020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48740653-48743035 transcript_region:SL2.40ch11:48740653..48743035- go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00031000g0004.1 protein AED:0.28 eAED:0.30 QI:0|0.83|0.42|1|0.5|0.71|7|0|390; (*GB) gi|225452304|ref|XP_002272292.1| (e_value=0.0) PREDICTED: glucuronokinase 1 [Vitis vinifera];; (*SWP) sp|Q93ZC9|GLAK1_ARATH (e_value=0.0) Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1;; (*TAIR) AT3G01640.1 (e_value=0.0) | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362;; (*ITAG) Solyc02g093440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold "; GO:0004335 NbS00034012g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|317; (*GB) gi|225439627|ref|XP_002268412.1| (e_value=1e-163) PREDICTED: cationic peroxidase 1 [Vitis vinifera];; (*SWP) sp|P22195|PER1_ARAHY (e_value=1e-127) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=1e-119) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc10g076210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58379010-58380144 transcript_region:SL2.40ch10:58379010..58380144- go_terms:GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00039322g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.57|1|0.5|0.57|7|136|370; (*GB) gi|297805586|ref|XP_002870677.1| (e_value=1e-163) hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=1e-162) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.1 (e_value=1e-163) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446;; (*ITAG) Solyc05g014530.1.1 (e_value=6e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8389595-8392288 transcript_region:SL2.40ch05:8389595..8392288+ go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00038719g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.82|0.77|0.94|0.82|0.83|18|0|957; (*GB) gi|359490829|ref|XP_003634172.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853102 [Vitis vinifera];; (*TAIR) AT3G49400.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18319249-18324373 REVERSE LENGTH=892;; (*ITAG) Solyc06g073680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41848227-41854416 transcript_region:SL2.40ch06:41848227..41854416- go_terms:GO:0000166 functional_description:"Notchless protein homolog 1 (AHRD V1 *--- NLE1_PONAB); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00038719g0014.1 protein AED:0.20 eAED:0.27 QI:115|0.16|0.28|1|0.5|0.28|7|148|450; (*GB) gi|639834|emb|CAA58823.1| (e_value=0.0) NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=0.0) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=0.0) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbS00030530g0002.1 protein AED:0.10 eAED:0.10 QI:73|1|1|1|0.8|0.66|6|192|515; (*GB) gi|383212260|dbj|BAM09000.1| (e_value=0.0) cytokinin hydroxylase-like [Solanum lycopersicum];; (*SWP) sp|Q9FF18|C7351_ARATH (e_value=0.0) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A1 PE=1 SV=1;; (*TAIR) AT5G38450.1 (e_value=0.0) | Symbols: CYP735A1 | cytochrome P450, family 735, subfamily A, polypeptide 1 | chr5:15394000-15397233 REVERSE LENGTH=518;; (*ITAG) Solyc02g085880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43245949-43247983 transcript_region:SL2.40ch02:43245949..43247983+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00030530g0010.1 protein AED:0.12 eAED:0.12 QI:67|0.85|1|1|0.57|0.75|8|492|346; (*GB) gi|225452057|ref|XP_002283938.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100258368 [Vitis vinifera];; (*SWP) sp|F4IQJ2|ELP5_ARATH (e_value=6e-104) Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1 SV=1;; (*TAIR) AT2G18410.1 (e_value=5e-105) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374;; (*ITAG) Solyc02g086100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43456529-43462769 transcript_region:SL2.40ch02:43456529..43462769+ functional_description:"Dermal papilla-derived protein 6 homolog (AHRD V1 *-*- DERP6_DANRE); contains Interpro domain(s) IPR019519 Histone acetylation protein 2 "; NbS00011757g0006.1 protein AED:0.28 eAED:0.28 QI:157|1|1|1|1|1|3|625|405; (*GB) gi|225452376|ref|XP_002275607.1| (e_value=4e-70) PREDICTED: uncharacterized protein LOC100264681 [Vitis vinifera];; (*TAIR) AT5G14540.1 (e_value=6e-52) | Symbols: | Protein of unknown function (DUF1421) | chr5:4687333-4689624 REVERSE LENGTH=547;; (*ITAG) Solyc12g035240.1.1 (e_value=6e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23997387-24003235 transcript_region:SL2.40ch12:23997387..24003235+ functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 ***- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00011757g0113.1 protein AED:0.04 eAED:0.04 QI:205|1|1|1|1|1|4|505|261 NbS00011757g0102.1 protein AED:0.11 eAED:0.11 QI:74|0.87|0.88|1|0.5|0.44|9|169|382 NbS00011757g0115.1 protein AED:0.33 eAED:0.33 QI:0|0.57|0.37|1|0.85|0.75|8|0|590 NbS00009746g0007.1 protein AED:0.03 eAED:0.07 QI:0|0.4|0.16|1|1|0.83|6|96|823; (*GB) gi|147821303|emb|CAN74586.1| (e_value=0.0) hypothetical protein VITISV_041989 [Vitis vinifera];; (*SWP) sp|O22907|RH24_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2;; (*TAIR) AT2G47330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19429083-19431617 REVERSE LENGTH=760;; (*ITAG) Solyc01g079330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70909331-70918655 transcript_region:SL2.40ch01:70909331..70918655- go_terms:GO:0005515 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00009746g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|357; (*GB) gi|224130976|ref|XP_002320971.1| (e_value=2e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ24|PPR4_ARATH (e_value=1e-85) Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1;; (*TAIR) AT1G02370.1 (e_value=9e-87) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:474516-476383 FORWARD LENGTH=537;; (*ITAG) Solyc01g079320.2.1 (e_value=2e-166) genomic_reference:SL2.40ch01 gene_region:70904161-70906500 transcript_region:SL2.40ch01:70904161..70906500- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB79_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00012056g0001.1 protein AED:0.09 eAED:0.09 QI:63|1|1|1|1|1|3|144|283; (*GB) gi|78191436|gb|ABB29939.1| (e_value=9e-180) major intrinsic protein 2-like [Solanum tuberosum];; (*SWP) sp|Q9ATM6|PIP24_MAIZE (e_value=1e-164) Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=4e-161) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc11g069430.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51094793-51097463 transcript_region:SL2.40ch11:51094793..51097463- go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- Q9M4T0_ALLCE); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00013094g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.86|0.86|0.96|0.93|0.96|30|371|1435; (*GB) gi|224089843|ref|XP_002308832.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q80V62|FACD2_MOUSE (e_value=2e-66) Fanconi anemia group D2 protein homolog OS=Mus musculus GN=Fancd2 PE=1 SV=2;; (*TAIR) AT4G14970.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 257 Blast hits to 164 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr4:8553854-8561664 FORWARD LENGTH=1489;; (*ITAG) Solyc01g097110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79816578-79835266 transcript_region:SL2.40ch01:79816578..79835266- functional_description:"Fanconi anemia group D2 protein (AHRD V1 *-*- FACD2_HUMAN)"; NbS00027921g0004.1 protein AED:0.16 eAED:0.16 QI:139|0.66|0.61|1|0.58|0.61|13|0|731; (*GB) gi|156763836|emb|CAO99120.1| (e_value=0.0) putative hydrolase [Nicotiana tabacum];; (*SWP) sp|Q8HY87|RNZ2_MACFA (e_value=3e-50) Zinc phosphodiesterase ELAC protein 2 OS=Macaca fascicularis GN=ELAC2 PE=2 SV=1;; (*TAIR) AT1G52160.1 (e_value=0.0) | Symbols: TRZ3 | tRNAse Z3 | chr1:19420911-19424419 REVERSE LENGTH=890;; (*ITAG) Solyc10g079670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60491307-60495228 transcript_region:SL2.40ch10:60491307..60495228+ go_terms:GO:0016787,GO:0042779 functional_description:"Ribonuclease Z (AHRD V1 ***- C1GH70_PARBD); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0016787,GO:0042779 NbS00047880g0005.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.33|1|1|3|0|151 NbS00047880g0008.1 protein AED:0.14 eAED:0.14 QI:253|1|0.88|1|0.87|0.66|9|1200|482; (*GB) gi|297737709|emb|CBI26910.3| (e_value=4e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G70950.1 (e_value=7e-29) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr1:26752779-26755242 FORWARD LENGTH=478;; (*ITAG) Solyc05g008090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2513534-2518326 transcript_region:SL2.40ch05:2513534..2518326+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00018128g0003.1 protein AED:0.26 eAED:0.26 QI:87|1|0.5|1|0|0.5|2|0|340; (*GB) gi|225434135|ref|XP_002277631.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Vitis vinifera];; (*SWP) sp|Q96DI7|SNR40_HUMAN (e_value=2e-158) U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1;; (*TAIR) AT2G43770.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:18134272-18135303 REVERSE LENGTH=343;; (*ITAG) Solyc03g059100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:25012940-25013920 transcript_region:SL2.40ch03:25012940..25013920- go_terms:GO:0003714 functional_description:"WD-repeat protein 57 (AHRD V1 **-- B6TXG5_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00029987g0001.1 protein AED:0.08 eAED:0.08 QI:798|1|1|1|0.6|0.5|6|142|221; (*GB) gi|350539035|ref|NP_001233859.1| (e_value=1e-137) aromatic amino acid decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=4e-92) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=6e-95) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g068630.2.1 (e_value=1e-141) genomic_reference:SL2.40ch08 gene_region:54972694-54974816 transcript_region:SL2.40ch08:54972694..54974816- go_terms:GO:0030170,GO:0019752 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0030170,GO:0019752 NbS00024088g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|1|0.25|0.2|5|0|385; (*GB) gi|359472648|ref|XP_002280189.2| (e_value=1e-130) PREDICTED: MATE efflux family protein 5 [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=5e-112) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G71140.1 (e_value=4e-119) | Symbols: | MATE efflux family protein | chr1:26824762-26826748 FORWARD LENGTH=485;; (*ITAG) Solyc03g034400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10603581-10608309 transcript_region:SL2.40ch03:10603581..10608309- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00022619g0008.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|192; (*GB) gi|297733724|emb|CBI14971.3| (e_value=1e-65) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G63100.1 (e_value=9e-58) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25314434-25315423 REVERSE LENGTH=329;; (*ITAG) Solyc06g071670.1.1 (e_value=5e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40534042-40535037 transcript_region:SL2.40ch06:40534042..40535037- functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 ***- Q9LU06_ARATH)"; NbS00022619g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.33|0.83|1|1|6|0|558; (*GB) gi|297733723|emb|CBI14970.3| (e_value=4e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=5e-123) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1;; (*TAIR) AT5G63110.1 (e_value=4e-124) | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471;; (*ITAG) Solyc06g071680.2.1 (e_value=4e-154) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00015534g0004.1 protein AED:0.27 eAED:0.31 QI:252|0.66|0.69|1|0.5|0.53|13|0|468; (*GB) gi|225463446|ref|XP_002272547.1| (e_value=3e-121) PREDICTED: uncharacterized protein LOC100250429 [Vitis vinifera];; (*TAIR) AT3G59090.1 (e_value=7e-83) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:21839334-21842348 FORWARD LENGTH=367;; (*ITAG) Solyc02g070860.2.1 (e_value=1e-170) genomic_reference:SL2.40ch02 gene_region:35032801-35046444 transcript_region:SL2.40ch02:35032801..35046444+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015534g0003.1 protein AED:0.39 eAED:0.62 QI:0|0|0|1|1|1|2|0|64 NbS00024822g0004.1 protein AED:0.20 eAED:0.21 QI:0|0.87|0.66|1|0.87|0.55|9|0|688; (*GB) gi|225459280|ref|XP_002285784.1| (e_value=0.0) PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera];; (*SWP) sp|Q9C9Q8|PMTT_ARATH (e_value=0.0) Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2;; (*TAIR) AT1G78240.2 (e_value=0.0) | Symbols: TSD2, QUA2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29433173-29435815 REVERSE LENGTH=684;; (*ITAG) Solyc04g074290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57869993-57876242 transcript_region:SL2.40ch04:57869993..57876242- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbC25064010g0003.1 protein AED:0.34 eAED:0.64 QI:1|0|0|1|0|0.5|2|95|90 NbS00036173g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|225429512|ref|XP_002278652.1| (e_value=2e-61) PREDICTED: glutaredoxin-C6 [Vitis vinifera];; (*SWP) sp|Q8L9S3|GRXC6_ARATH (e_value=4e-48) Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2;; (*TAIR) AT4G33040.1 (e_value=3e-49) | Symbols: | Thioredoxin superfamily protein | chr4:15940779-15941213 REVERSE LENGTH=144;; (*ITAG) Solyc08g062970.1.1 (e_value=6e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:49664250-49664669 transcript_region:SL2.40ch08:49664250..49664669- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9H2P7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00003442g0001.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|365222894|gb|AEW69799.1| (e_value=1e-33) Hop-interacting protein THI037 [Solanum lycopersicum];; (*TAIR) AT3G06140.1 (e_value=1e-15) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g080090.2.1 (e_value=5e-39) genomic_reference:SL2.40ch01 gene_region:71764442-71769530 transcript_region:SL2.40ch01:71764442..71769530- functional_description:"Zinc finger RING-type protein (AHRD V1 *-*- B3U2A9_CUCSA)"; NbS00003442g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|2|122|156; (*GB) gi|365222894|gb|AEW69799.1| (e_value=7e-103) Hop-interacting protein THI037 [Solanum lycopersicum];; (*SWP) sp|Q7ZUL9|MGRN1_DANRE (e_value=1e-28) Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1;; (*TAIR) AT3G06140.1 (e_value=1e-57) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g080080.2.1 (e_value=2e-108) genomic_reference:SL2.40ch01 gene_region:71755260-71756339 transcript_region:SL2.40ch01:71755260..71756339- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00003442g0002.1 protein AED:0.35 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|365222894|gb|AEW69799.1| (e_value=6e-83) Hop-interacting protein THI037 [Solanum lycopersicum];; (*TAIR) AT3G06140.1 (e_value=6e-40) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g080080.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:71755260-71756339 transcript_region:SL2.40ch01:71755260..71756339- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00003442g0106.1 protein AED:0.07 eAED:0.09 QI:396|1|0.5|1|1|1|2|0|569 NbS00003248g0007.1 protein AED:0.11 eAED:0.11 QI:72|1|1|1|0.5|1|3|473|173; (*GB) gi|225449951|ref|XP_002270909.1| (e_value=3e-38) PREDICTED: uncharacterized protein LOC100261896 [Vitis vinifera];; (*TAIR) AT5G13470.1 (e_value=7e-33) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4318562-4319720 FORWARD LENGTH=159;; (*ITAG) Solyc01g088140.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:74752234-74755320 transcript_region:SL2.40ch01:74752234..74755320- functional_description:"Unknown Protein (AHRD V1)"; NbS00003248g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|224085511|ref|XP_002307601.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMK5|STN1_ARATH (e_value=3e-52) CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1;; (*TAIR) AT1G07130.1 (e_value=2e-53) | Symbols: STN1, ATSTN1 | Nucleic acid-binding, OB-fold-like protein | chr1:2187928-2188410 FORWARD LENGTH=160;; (*ITAG) Solyc01g088130.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:74750019-74750765 transcript_region:SL2.40ch01:74750019..74750765- go_terms:GO:0005515 functional_description:"CST complex subunit STN1 (AHRD V1 ***- STN1_ARATH); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0005515 NbS00003248g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|123 NbS00022820g0008.1 protein AED:0.10 eAED:0.10 QI:326|1|1|1|1|1|8|204|696; (*GB) gi|359475954|ref|XP_002279357.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q9FKG5|PUB51_ARATH (e_value=8e-118) U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2;; (*TAIR) AT5G12000.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:3874151-3876780 REVERSE LENGTH=701;; (*ITAG) Solyc12g096010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63432653-63438226 transcript_region:SL2.40ch12:63432653..63438226- go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00022820g0007.1 protein AED:0.18 eAED:0.18 QI:6|1|0.5|1|1|1|4|0|538; (*GB) gi|225429580|ref|XP_002280195.1| (e_value=0.0) PREDICTED: protein phosphatase 2C 16-like [Vitis vinifera];; (*SWP) sp|Q9CAJ0|P2C16_ARATH (e_value=1e-164) Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1;; (*TAIR) AT1G72770.3 (e_value=9e-166) | Symbols: HAB1 | homology to ABI1 | chr1:27390998-27392851 FORWARD LENGTH=511;; (*ITAG) Solyc12g096020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63439852-63442361 transcript_region:SL2.40ch12:63439852..63442361- go_terms:GO:0004722,GO:0008022 functional_description:"Protein phosphatase 2C (AHRD V1 **** A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00021155g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|273; (*GB) gi|225452003|ref|XP_002279965.1| (e_value=9e-125) PREDICTED: probable carboxylesterase 17 [Vitis vinifera];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=4e-96) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=3e-97) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc02g085800.1.1 (e_value=2e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43154776-43155807 transcript_region:SL2.40ch02:43154776..43155807+ go_terms:GO:0016298,GO:0017171 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIF8); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0016298,GO:0017171 NbS00021155g0011.1 protein AED:0.20 eAED:0.20 QI:656|0.88|0.88|1|0.76|0.55|18|478|374; (*GB) gi|225451999|ref|XP_002283510.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit zeta [Vitis vinifera];; (*SWP) sp|P80317|TCPZ_MOUSE (e_value=8e-139) T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3;; (*TAIR) AT3G02530.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00021155g0007.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|0|0.5|2|0|70; (*GB) gi|224096824|ref|XP_002334667.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16060.1 (e_value=5e-32) | Symbols: | Cytochrome c oxidase biogenesis protein Cmc1-like | chr5:5246161-5247209 FORWARD LENGTH=95; NbS00046732g0004.1 protein AED:0.11 eAED:0.12 QI:0|0.8|0.63|0.90|0.8|0.72|11|355|964; (*GB) gi|359482944|ref|XP_002279789.2| (e_value=0.0) PREDICTED: 97 kDa heat shock protein-like [Vitis vinifera];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44226370-44230445 transcript_region:SL2.40ch12:44226370..44230445- go_terms:GO:0006265,GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0006265,GO:0005524 NbS00059493g0002.1 protein AED:0.42 eAED:0.49 QI:0|0|0|1|1|1|2|0|62; (*ITAG) Solyc05g055370.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64190970-64191221 transcript_region:SL2.40ch05:64190970..64191221+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009177g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|354|1021; (*GB) gi|225443594|ref|XP_002278698.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT1G28440.1 (e_value=0.0) | Symbols: HSL1 | HAESA-like 1 | chr1:9996914-10000171 FORWARD LENGTH=996;; (*ITAG) Solyc02g077630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37086211-37090305 transcript_region:SL2.40ch02:37086211..37090305- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018647g0007.1 protein AED:0.24 eAED:0.62 QI:0|0|0|1|0|0|2|0|73 NbS00050368g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|225455475|ref|XP_002280043.1| (e_value=2e-43) PREDICTED: ethylene-responsive transcription factor ERF025-like [Vitis vinifera];; (*SWP) sp|Q9FJ90|ERF25_ARATH (e_value=4e-40) Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1;; (*TAIR) AT5G52020.1 (e_value=3e-41) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232;; (*ITAG) Solyc06g035700.1.1 (e_value=1e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:21428094-21428630 transcript_region:SL2.40ch06:21428094..21428630- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbC25559599g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|324; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=1e-126) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=2e-99) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=3e-129) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00051213g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|0|0.33|3|0|120; (*GB) gi|296088895|emb|CBI38444.3| (e_value=4e-23) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g007470.1.1 (e_value=3e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00031388g0014.1 protein AED:0.07 eAED:0.07 QI:171|1|0.83|1|1|1|6|475|409; (*GB) gi|225460849|ref|XP_002277187.1| (e_value=2e-161) PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Vitis vinifera];; (*SWP) sp|Q55B11|VTA1_DICDI (e_value=2e-28) Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1;; (*TAIR) AT4G26750.1 (e_value=9e-124) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475848-13478382 REVERSE LENGTH=421;; (*ITAG) Solyc07g064980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64146302-64151201 transcript_region:SL2.40ch07:64146302..64151201+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein VTA1 homolog (AHRD V1 *--- C1C2K6_9MAXI); contains Interpro domain(s) IPR006745 Protein of unknown function DUF605 "; GO:0005515 NbS00031388g0015.1 protein AED:0.60 eAED:0.61 QI:0|0|0|0.33|1|1|3|0|232 NbS00031388g0012.1 protein AED:0.66 eAED:0.66 QI:232|0.25|0.4|0.6|0.25|0.4|5|0|193; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00031388g0009.1 protein AED:0.58 eAED:0.70 QI:0|0|0|0.66|1|1|3|0|142 NbS00028114g0012.1 protein AED:0.13 eAED:0.17 QI:0|0.75|0.8|1|1|1|5|0|342; (*GB) gi|156070802|gb|ABU45214.1| (e_value=3e-130) unknown [Solanum bulbocastanum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-33) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G66710.1 (e_value=1e-67) | Symbols: | Protein kinase superfamily protein | chr5:26636609-26638564 FORWARD LENGTH=405;; (*ITAG) Solyc02g085620.2.1 (e_value=1e-135) genomic_reference:SL2.40ch02 gene_region:43021184-43027761 transcript_region:SL2.40ch02:43021184..43027761- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B6T8S1_MAIZE); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004712 NbS00028114g0002.1 protein AED:0.11 eAED:0.11 QI:18|0.33|0.5|1|1|1|4|460|278; (*GB) gi|156070803|gb|ABU45215.1| (e_value=2e-50) unknown [Solanum bulbocastanum];; (*TAIR) AT2G18500.1 (e_value=2e-33) | Symbols: ATOFP7, OFP7 | ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315;; (*ITAG) Solyc03g034100.2.1 (e_value=6e-54) genomic_reference:SL2.40ch03 gene_region:10070572-10072340 transcript_region:SL2.40ch03:10070572..10072340+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00038358g0003.1 protein AED:0.05 eAED:0.05 QI:265|0.55|0.7|0.8|1|1|10|215|265; (*GB) gi|42563399|ref|NP_186780.3| (e_value=5e-125) phosphoglycerate mutase-like-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9VR59|VIP1_DROME (e_value=6e-63) Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase OS=Drosophila melanogaster GN=l(1)G0196 PE=1 SV=2;; (*TAIR) AT3G01310.1 (e_value=1e-127) | Symbols: | Phosphoglycerate mutase-like family protein | chr3:94343-101603 REVERSE LENGTH=1056;; (*ITAG) Solyc03g058960.1.1 (e_value=4e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:24396272-24402465 transcript_region:SL2.40ch03:24396272..24402465- go_terms:GO:0003993,GO:0055114 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase (AHRD V1 **-- VIP1_DROME); contains Interpro domain(s) IPR009078 Ferritin/ribonucleotide reductase-like "; GO:0003993,GO:0055114 NbS00007811g0009.1 protein AED:0.14 eAED:0.14 QI:81|0.47|0.5|1|0.94|0.94|18|0|1300; (*GB) gi|297831136|ref|XP_002883450.1| (e_value=0.0) PAKRP1L [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9NS87|KIF15_HUMAN (e_value=8e-81) Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G23670.1 (e_value=0.0) | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated kinesin-related protein, putative | chr3:8519290-8525055 FORWARD LENGTH=1313;; (*ITAG) Solyc09g097860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67119883-67128642 transcript_region:SL2.40ch09:67119883..67128642+ go_terms:GO:0008574 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LUG0_ARATH); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0008574 NbS00007811g0015.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.57|1|0.83|0.85|7|35|442; (*GB) gi|147786897|emb|CAN73299.1| (e_value=5e-120) hypothetical protein VITISV_005183 [Vitis vinifera];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=4e-63) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=3e-64) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc09g097870.2.1 (e_value=2e-135) genomic_reference:SL2.40ch09 gene_region:67134718-67137049 transcript_region:SL2.40ch09:67134718..67137049- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00006035g0009.1 protein AED:0.74 eAED:0.79 QI:0|0|0.14|0.28|0|0.28|7|0|222; (*GB) gi|297745925|emb|CBI15981.3| (e_value=5e-61) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07270.1 (e_value=2e-49) | Symbols: | Cell division control, Cdc6 | chr1:2229757-2232897 REVERSE LENGTH=505;; (*ITAG) Solyc06g076860.2.1 (e_value=1e-91) genomic_reference:SL2.40ch06 gene_region:44152891-44159926 transcript_region:SL2.40ch06:44152891..44159926+ go_terms:GO:0005515,GO:0003682 functional_description:"Cell division control protein 6 homolog (AHRD V1 **-- CDC6_MOUSE); contains Interpro domain(s) IPR016314 Cell division control, Cdc6 "; GO:0005515,GO:0003682 NbS00006035g0010.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|4|0|272; (*GB) gi|225448367|ref|XP_002268645.1| (e_value=9e-162) PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=4e-159) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G40010.1 (e_value=2e-159) | Symbols: | Ribosomal protein L10 family protein | chr2:16708578-16710448 REVERSE LENGTH=317;; (*ITAG) Solyc06g076870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44160488-44162942 transcript_region:SL2.40ch06:44160488..44162942- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7LEE5_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00039750g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|357; (*GB) gi|350537551|ref|NP_001234554.1| (e_value=0.0) UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Solanum lycopersicum];; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc02g089170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45629291-45630890 transcript_region:SL2.40ch02:45629291..45630890+ go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00039750g0012.1 protein AED:0.17 eAED:0.18 QI:13|0.87|0.66|1|0.87|0.77|9|0|470; (*GB) gi|109649528|gb|ABG36709.1| (e_value=0.0) cytochrome P450 CYP85A1 [Nicotiana tabacum];; (*SWP) sp|Q43147|C85A1_SOLLC (e_value=0.0) Cytochrome P450 85A1 OS=Solanum lycopersicum GN=CYP85A1 PE=2 SV=1;; (*TAIR) AT5G38970.1 (e_value=0.0) | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassinosteroid-6-oxidase 1 | chr5:15594935-15597774 REVERSE LENGTH=465;; (*ITAG) Solyc02g089160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45622003-45624825 transcript_region:SL2.40ch02:45622003..45624825+ go_terms:GO:0004497 functional_description:"Cytochrome P450"; GO:0004497 NbS00039750g0010.1 protein AED:0.34 eAED:0.35 QI:0|0.8|0.72|1|1|1|11|361|522; (*GB) gi|225451808|ref|XP_002281380.1| (e_value=0.0) PREDICTED: probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q9LFU5|TRM1_ARATH (e_value=0.0) Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3;; (*TAIR) AT5G15810.1 (e_value=0.0) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691;; (*ITAG) Solyc03g070400.1.1 (e_value=5e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:39178389-39180957 transcript_region:SL2.40ch03:39178389..39180957- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- C0HB58_SALSA); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00039750g0011.1 protein AED:0.23 eAED:0.87 QI:0|0|0|1|0|0|2|0|112 NbS00002456g0014.1 protein AED:0.26 eAED:0.27 QI:0|0.95|0.85|1|0.85|0.85|21|0|1046; (*GB) gi|359480896|ref|XP_003632541.1| (e_value=0.0) PREDICTED: probable cation-transporting ATPase-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LT02|ATY1_ARATH (e_value=0.0) Probable cation-transporting ATPase OS=Arabidopsis thaliana GN=At5g23630 PE=2 SV=1;; (*TAIR) AT5G23630.1 (e_value=0.0) | Symbols: PDR2, MIA | phosphate deficiency response 2 | chr5:7960756-7967644 REVERSE LENGTH=1179;; (*ITAG) Solyc01g096830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79582467-79598760 transcript_region:SL2.40ch01:79582467..79598760- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 *-** ATC1_YEAST); contains Interpro domain(s) IPR006544 ATPase, P-type, unknown pump specificity (type V) "; GO:0005388 NbS00002456g0012.1 protein AED:0.35 eAED:0.35 QI:186|1|1|1|0.66|0.75|4|149|209; (*GB) gi|148607974|gb|ABQ95545.1| (e_value=2e-130) CCaMK [Petunia x hybrida];; (*SWP) sp|Q6RET7|CCAMK_MEDTR (e_value=5e-111) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 OS=Medicago truncatula GN=DMI3 PE=2 SV=1;; (*ITAG) Solyc01g096820.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:79577959-79582114 transcript_region:SL2.40ch01:79577959..79582114+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 ***- Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00002456g0013.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|207; (*GB) gi|359480896|ref|XP_003632541.1| (e_value=2e-65) PREDICTED: probable cation-transporting ATPase-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LT02|ATY1_ARATH (e_value=4e-64) Probable cation-transporting ATPase OS=Arabidopsis thaliana GN=At5g23630 PE=2 SV=1;; (*TAIR) AT5G23630.1 (e_value=3e-65) | Symbols: PDR2, MIA | phosphate deficiency response 2 | chr5:7960756-7967644 REVERSE LENGTH=1179;; (*ITAG) Solyc01g096830.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:79582467-79598760 transcript_region:SL2.40ch01:79582467..79598760- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 *-** ATC1_YEAST); contains Interpro domain(s) IPR006544 ATPase, P-type, unknown pump specificity (type V) "; GO:0005388 NbS00030587g0005.1 protein AED:0.14 eAED:0.16 QI:0|0.75|0.8|1|0.25|0.6|5|348|269; (*GB) gi|195970356|gb|ACG60665.1| (e_value=1e-139) basic helix-loop-helix protein [Nicotiana tabacum];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=2e-84) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=2e-85) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc07g064040.2.1 (e_value=1e-127) genomic_reference:SL2.40ch07 gene_region:63560820-63564425 transcript_region:SL2.40ch07:63560820..63564425+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00013070g0012.1 protein AED:0.17 eAED:0.17 QI:302|0.8|0.66|1|0.6|0.66|6|439|232; (*GB) gi|34978966|gb|AAQ83692.1| (e_value=9e-133) C-4 sterol methyl oxidase 2 [Nicotiana benthamiana];; (*SWP) sp|Q8VWZ8|SMO22_ARATH (e_value=2e-124) Methylsterol monooxygenase 2-2 OS=Arabidopsis thaliana GN=SMO2-2 PE=2 SV=1;; (*TAIR) AT2G29390.2 (e_value=3e-126) | Symbols: ATSMO2 | sterol 4-alpha-methyl-oxidase 2-2 | chr2:12610758-12612799 REVERSE LENGTH=260;; (*ITAG) Solyc06g005750.2.1 (e_value=1e-136) genomic_reference:SL2.40ch06 gene_region:785189-789735 transcript_region:SL2.40ch06:785189..789735- go_terms:GO:0080065 functional_description:"Sterol 4-alpha-methyl-oxidase 2 (AHRD V1 **** D7KH21_ARALY); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0080065 NbS00013070g0011.1 protein AED:0.33 eAED:0.33 QI:0|0.83|0.71|1|0.16|0.14|7|418|321; (*GB) gi|225434839|ref|XP_002282638.1| (e_value=4e-132) PREDICTED: tropinone reductase homolog At1g07440 [Vitis vinifera];; (*SWP) sp|P50165|TRNH_DATST (e_value=7e-98) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT2G29260.1 (e_value=4e-134) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:12582523-12583954 FORWARD LENGTH=322;; (*ITAG) Solyc06g005720.2.1 (e_value=3e-173) genomic_reference:SL2.40ch06 gene_region:766800-773885 transcript_region:SL2.40ch06:766800..773885+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Tropinone-reductase-like39 (AHRD V1 **-- B2BXL7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0016020,GO:0008152,GO:0055114 NbS00013070g0111.1 protein AED:0.26 eAED:0.26 QI:240|1|1|1|0.2|0.16|6|155|183 NbS00013070g0109.1 protein AED:0.18 eAED:0.18 QI:659|0.75|0.55|1|1|1|9|0|677 NbS00013070g0113.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.62|0.75|0.14|0.37|8|0|434 NbS00034346g0005.1 protein AED:0.18 eAED:0.19 QI:13|0.5|0.33|1|0|0|3|0|229; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=6e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=9e-30) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT5G49620.1 (e_value=1e-52) | Symbols: AtMYB78, MYB78 | myb domain protein 78 | chr5:20137491-20139384 REVERSE LENGTH=307;; (*ITAG) Solyc01g057910.2.1 (e_value=1e-85) genomic_reference:SL2.40ch01 gene_region:57222003-57223704 transcript_region:SL2.40ch01:57222003..57223704+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00041958g0004.1 protein AED:0.13 eAED:0.16 QI:0|0|0.33|1|0.5|0.33|3|748|646; (*GB) gi|255536795|ref|XP_002509464.1| (e_value=0.0) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|P56820|EIF3D_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1;; (*TAIR) AT4G20980.4 (e_value=0.0) | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591;; (*ITAG) Solyc02g078120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37474003-37475736 transcript_region:SL2.40ch02:37474003..37475736- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 7 (AHRD V1 ***- Q9FKV6_ARATH); contains Interpro domain(s) IPR007783 Eukaryotic translation initiation factor 3, subunit 7 "; GO:0005515 NbS00030127g0006.1 protein AED:0.01 eAED:0.01 QI:301|1|1|1|1|1|5|168|309; (*GB) gi|302143997|emb|CBI23102.3| (e_value=4e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24580.2 (e_value=2e-82) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=318;; (*ITAG) Solyc03g080100.2.1 (e_value=3e-100) genomic_reference:SL2.40ch03 gene_region:45553244-45555756 transcript_region:SL2.40ch03:45553244..45555756+ go_terms:GO:0030001 functional_description:"Copper-translocating P-type ATPase (AHRD V1 *--- Q3JHP1_BURP1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00030127g0005.1 protein AED:0.03 eAED:0.03 QI:63|1|1|1|1|1|2|167|139; (*GB) gi|255560578|ref|XP_002521303.1| (e_value=4e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27590.1 (e_value=3e-41) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:13771224-13771790 FORWARD LENGTH=156;; (*ITAG) Solyc03g080110.2.1 (e_value=6e-54) genomic_reference:SL2.40ch03 gene_region:45559184-45560658 transcript_region:SL2.40ch03:45559184..45560658+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 *-*- B6TZ00_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00015256g0001.1 protein AED:0.00 eAED:0.00 QI:17|1|1|1|1|1|2|179|515; (*GB) gi|224076988|ref|XP_002305081.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q6J541|C79D3_LOTJA (e_value=7e-176) Isoleucine N-monooxygenase 1 OS=Lotus japonicus GN=CYP79D3 PE=1 SV=1;; (*TAIR) AT5G05260.1 (e_value=1e-166) | Symbols: CYP79A2 | cytochrome p450 79a2 | chr5:1559778-1561765 REVERSE LENGTH=523;; (*ITAG) Solyc04g005360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:257826-259469 transcript_region:SL2.40ch04:257826..259469- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00016826g0004.1 protein AED:0.14 eAED:0.14 QI:101|1|1|1|0|0.25|4|286|161; (*GB) gi|225464267|ref|XP_002271224.1| (e_value=9e-49) PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera];; (*SWP) sp|Q43472|GRP_HORVU (e_value=7e-17) Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1;; (*TAIR) AT1G73530.1 (e_value=3e-42) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27643801-27645386 REVERSE LENGTH=181;; (*ITAG) Solyc09g011210.2.1 (e_value=5e-56) genomic_reference:SL2.40ch09 gene_region:4553223-4555661 transcript_region:SL2.40ch09:4553223..4555661- go_terms:GO:0008143 functional_description:"RNA binding protein (AHRD V1 **** B6U487_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008143 NbS00005007g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|147; (*ITAG) Solyc07g032700.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00005007g0012.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.25|1|1|4|231|74 NbS00005007g0003.1 protein AED:0.16 eAED:0.16 QI:576|0.8|0.83|1|0.8|0.66|6|299|209; (*GB) gi|255584277|ref|XP_002532875.1| (e_value=6e-127) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G22370.1 (e_value=1e-121) | Symbols: | unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:9501019-9502078 REVERSE LENGTH=219;; (*ITAG) Solyc06g008010.2.1 (e_value=6e-137) genomic_reference:SL2.40ch06 gene_region:1855143-1860015 transcript_region:SL2.40ch06:1855143..1860015- go_terms:GO:0016455,GO:0005515 functional_description:"Mediator of RNA polymerase II transcription subunit 18 (AHRD V1 **** B6STT5_MAIZE)"; GO:0016455,GO:0005515 NbS00005007g0008.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|68687853|emb|CAI78906.1| (e_value=2e-39) putative glutathione S-transferase [Nicotiana tabacum];; (*SWP) sp|P46423|GSTF_HYOMU (e_value=4e-40) Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1;; (*TAIR) AT2G02930.1 (e_value=1e-27) | Symbols: ATGSTF3, GST16, GSTF3 | glutathione S-transferase F3 | chr2:851348-852106 REVERSE LENGTH=212;; (*ITAG) Solyc06g009020.2.1 (e_value=1e-36) genomic_reference:SL2.40ch06 gene_region:2965668-2967884 transcript_region:SL2.40ch06:2965668..2967884+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** A5YWI8_SOLCO); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00005007g0108.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|444|693 NbS00005007g0201.1 protein AED:0.33 eAED:0.61 QI:0|0|0|0.66|1|1|3|0|124 NbS00005007g0209.1 protein AED:0.15 eAED:0.15 QI:770|0.94|0.94|1|0.94|0.88|18|287|2163 NbS00003016g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.91|0.84|1|0.66|0.76|13|579|798; (*GB) gi|356568585|ref|XP_003552491.1| (e_value=0.0) PREDICTED: protein transport protein SEC23-like isoform 1 [Glycine max];; (*SWP) sp|Q4PE39|SEC23_USTMA (e_value=0.0) Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1;; (*TAIR) AT3G23660.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr3:8513666-8517729 REVERSE LENGTH=765;; (*ITAG) Solyc05g053830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63004325-63011970 transcript_region:SL2.40ch05:63004325..63011970- go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00003016g0104.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.92|0.92|28|66|984 NbS00003016g0105.1 protein AED:0.32 eAED:0.34 QI:3|0.5|0.66|1|0|0|3|0|67 NbS00009852g0006.1 protein AED:0.28 eAED:0.29 QI:0|0.90|0.91|1|0.54|0.66|12|313|769; (*GB) gi|255567305|ref|XP_002524633.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q9LD37|CNG20_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1;; (*TAIR) AT3G17700.1 (e_value=0.0) | Symbols: CNBT1, CNGC20, ATCNGC20 | cyclic nucleotide-binding transporter 1 | chr3:6049074-6052449 FORWARD LENGTH=764;; (*ITAG) Solyc03g098210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54006686-54020551 transcript_region:SL2.40ch03:54006686..54020551- go_terms:GO:0004497,GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like "; GO:0004497,GO:0030551 NbS00026010g0006.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|1|1|3|0|141; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-42) hypothetical protein [Nicotiana tabacum]; NbS00026010g0017.1 protein AED:0.05 eAED:0.06 QI:44|0.87|0.6|1|0.79|0.76|25|580|2583; (*GB) gi|359492962|ref|XP_003634489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254031 isoform 2 [Vitis vinifera];; (*SWP) sp|Q14667|K0100_HUMAN (e_value=6e-16) UPF0378 protein KIAA0100 OS=Homo sapiens GN=KIAA0100 PE=1 SV=3;; (*TAIR) AT1G58250.1 (e_value=0.0) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbC26143309g0002.1 protein AED:0.16 eAED:0.16 QI:1|1|0|1|0|0|2|0|69 NbS00031622g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|225457036|ref|XP_002282787.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100243388 [Vitis vinifera];; (*TAIR) AT1G70420.1 (e_value=1e-16) | Symbols: | Protein of unknown function (DUF1645) | chr1:26539840-26540658 REVERSE LENGTH=272;; (*ITAG) Solyc03g114350.1.1 (e_value=3e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:58408606-58409475 transcript_region:SL2.40ch03:58408606..58409475+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00031622g0006.1 protein AED:0.76 eAED:0.92 QI:0|0|0|0.71|0.66|0.71|7|0|273; (*GB) gi|255540671|ref|XP_002511400.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FXT6|PEX14_ARATH (e_value=5e-12) Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2;; (*TAIR) AT5G62810.1 (e_value=4e-13) | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220323-25223571 FORWARD LENGTH=507;; (*ITAG) Solyc06g071470.2.1 (e_value=5e-105) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00005754g0001.1 protein AED:0.06 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|272; (*ITAG) Solyc12g062880.1.1 (e_value=7e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003931g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.75|1|0.66|0.5|4|0|464; (*GB) gi|520958|emb|CAA81749.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q9STR4|1A17_ARATH (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1;; (*TAIR) AT4G26200.1 (e_value=0.0) | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate synthase 7 | chr4:13275307-13276946 FORWARD LENGTH=447;; (*ITAG) Solyc07g026900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:32131840-32133366 transcript_region:SL2.40ch07:32131840..32133366+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q43167_SOLTU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803,GO:0016847 NbS00016386g0013.1 protein AED:0.06 eAED:0.06 QI:75|0.93|0.94|1|0.93|0.88|17|337|1001; (*GB) gi|359484919|ref|XP_002266524.2| (e_value=0.0) PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera];; (*SWP) sp|Q9CZU3|SK2L2_MOUSE (e_value=0.0) Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1;; (*TAIR) AT2G06990.1 (e_value=0.0) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995;; (*ITAG) Solyc05g047520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58151405-58159646 transcript_region:SL2.40ch05:58151405..58159646+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00016386g0014.1 protein AED:0.33 eAED:0.33 QI:97|1|0.5|1|1|1|2|0|414; (*GB) gi|225445658|ref|XP_002265876.1| (e_value=7e-166) PREDICTED: pentatricopeptide repeat-containing protein At3g42630 [Vitis vinifera];; (*SWP) sp|Q9M2A1|PP263_ARATH (e_value=2e-137) Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2;; (*TAIR) AT3G42630.1 (e_value=2e-138) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:14722314-14723635 FORWARD LENGTH=415;; (*ITAG) Solyc05g047540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58163573-58166944 transcript_region:SL2.40ch05:58163573..58166944+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- Q287V2_9BRAS); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016386g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|507; (*GB) gi|356547277|ref|XP_003542042.1| (e_value=0.0) PREDICTED: D-inositol-3-phosphate glycosyltransferase-like [Glycine max];; (*TAIR) AT5G59070.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:23845237-23847329 FORWARD LENGTH=505;; (*ITAG) Solyc05g047560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:58176982-58178496 transcript_region:SL2.40ch05:58176982..58178496- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** Q3SM08_THIDA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00016386g0016.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|534; (*GB) gi|14423323|gb|AAK62344.1| (e_value=0.0) elicitor-inducible cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|Q43240|TCMO_ZINEL (e_value=0.0) Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=0.0) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00016386g0017.1 protein AED:0.24 eAED:0.26 QI:0|0.55|0.4|1|0.88|0.9|10|0|819; (*GB) gi|147860573|emb|CAN79719.1| (e_value=0.0) hypothetical protein VITISV_012742 [Vitis vinifera];; (*SWP) sp|Q9FKG6|PUB52_ARATH (e_value=5e-123) U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc05g047550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58170231-58175034 transcript_region:SL2.40ch05:58170231..58175034- go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00016386g0015.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|98; (*GB) gi|297815394|ref|XP_002875580.1| (e_value=2e-28) pentatricopeptide repeat protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9M2A1|PP263_ARATH (e_value=6e-30) Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2;; (*TAIR) AT3G42630.1 (e_value=4e-31) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:14722314-14723635 FORWARD LENGTH=415;; (*ITAG) Solyc05g047540.2.1 (e_value=2e-46) genomic_reference:SL2.40ch05 gene_region:58163573-58166944 transcript_region:SL2.40ch05:58163573..58166944+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- Q287V2_9BRAS); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018143g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|2|571|133; (*GB) gi|118484619|gb|ABK94182.1| (e_value=7e-59) unknown [Populus trichocarpa];; (*SWP) sp|Q9LHQ5|H2A2_ARATH (e_value=7e-57) Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1;; (*TAIR) AT3G20670.1 (e_value=5e-58) | Symbols: HTA13 | histone H2A 13 | chr3:7229472-7229963 FORWARD LENGTH=132;; (*ITAG) Solyc12g005270.1.1 (e_value=4e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00038296g0004.1 protein AED:0.20 eAED:0.20 QI:16|1|1|1|1|1|4|411|377; (*GB) gi|356509003|ref|XP_003523242.1| (e_value=0.0) PREDICTED: actin-7-like [Glycine max];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00047936g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|92 NbS00047936g0001.1 protein AED:0.20 eAED:0.31 QI:0|0|0|1|1|1|2|0|84; (*GB) gi|224132588|ref|XP_002321359.1| (e_value=3e-27) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g073040.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41391155-41391522 transcript_region:SL2.40ch06:41391155..41391522- functional_description:"Unknown Protein (AHRD V1)"; NbS00047936g0002.1 protein AED:0.46 eAED:0.46 QI:0|0.33|0|0.5|1|1|4|0|100; (*GB) gi|225442194|ref|XP_002276800.1| (e_value=1e-27) PREDICTED: stomatin-like protein 2 [Vitis vinifera];; (*SWP) sp|Q99JB2|STML2_MOUSE (e_value=9e-20) Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1;; (*TAIR) AT5G54100.1 (e_value=2e-28) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:21954035-21956500 REVERSE LENGTH=401;; (*ITAG) Solyc06g073030.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41388909-41390901 transcript_region:SL2.40ch06:41388909..41390901- go_terms:GO:0005102 functional_description:"Band 7 stomatin family protein (AHRD V1 **-- C1MUP6_MICPS); contains Interpro domain(s) IPR001972 Stomatin "; GO:0005102 NbS00047936g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|0.5|0.33|3|0|111; (*GB) gi|297821082|ref|XP_002878424.1| (e_value=2e-21) serine protease inhibitor, Kazal-type family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G61980.1 (e_value=1e-22) | Symbols: | serine protease inhibitor, Kazal-type family protein | chr3:22956344-22956697 REVERSE LENGTH=117;; (*ITAG) Solyc06g073020.2.1 (e_value=2e-57) genomic_reference:SL2.40ch06 gene_region:41386285-41388620 transcript_region:SL2.40ch06:41386285..41388620+ go_terms:GO:0004867 functional_description:"Serine-type endopeptidase inhibitor (AHRD V1 *-** B6TFT9_MAIZE)"; GO:0004867 NbS00046316g0007.1 protein AED:0.20 eAED:0.20 QI:188|0.75|0.8|0.8|0.25|0.6|5|0|198; (*GB) gi|297740764|emb|CBI30946.3| (e_value=4e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74545|YCV6_SCHPO (e_value=4e-27) Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=2 SV=1;; (*TAIR) AT1G30300.1 (e_value=1e-110) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:10673084-10675061 FORWARD LENGTH=324;; (*ITAG) Solyc08g023500.2.1 (e_value=1e-129) genomic_reference:SL2.40ch08 gene_region:16931268-16942383 transcript_region:SL2.40ch08:16931268..16942383+ go_terms:GO:0003824 functional_description:"Metal-dependent hydrolase beta-lactamase family (AHRD V1 **-- Q26E97_FLABB); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00045963g0006.1 protein AED:0.26 eAED:0.26 QI:393|1|1|1|0.33|0.42|7|458|313; (*GB) gi|359496884|ref|XP_002272588.2| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100248144 [Vitis vinifera];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-46) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT2G01060.1 (e_value=1e-116) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286;; (*ITAG) Solyc11g067280.1.1 (e_value=4e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50098222-50101730 transcript_region:SL2.40ch11:50098222..50101730- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 **-- Q3LHL3_SOLTU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00031334g0009.1 protein AED:0.08 eAED:0.09 QI:27|0.5|0.2|1|0.75|0.6|5|0|820; (*GB) gi|225456727|ref|XP_002268222.1| (e_value=0.0) PREDICTED: RINT1-like protein-like [Vitis vinifera];; (*TAIR) AT3G47700.1 (e_value=0.0) | Symbols: MAG2 | RINT-1 / TIP-1 family | chr3:17583773-17586578 REVERSE LENGTH=795;; (*ITAG) Solyc03g113000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57356347-57363214 transcript_region:SL2.40ch03:57356347..57363214- go_terms:GO:0006810 functional_description:"Chromosome structural maintenance protein-like (AHRD V1 **-- Q6YUW7_ORYSJ); contains Interpro domain(s) IPR007528 RINT-1/TIP-1 "; GO:0006810 NbS00031334g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|225456731|ref|XP_002275117.1| (e_value=4e-61) PREDICTED: putative pectinesterase/pectinesterase inhibitor 26-like [Vitis vinifera];; (*SWP) sp|Q43867|PME1_ARATH (e_value=2e-33) Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1;; (*TAIR) AT1G53840.1 (e_value=1e-34) | Symbols: ATPME1, PME1 | pectin methylesterase 1 | chr1:20101533-20103458 FORWARD LENGTH=586;; (*ITAG) Solyc03g112990.1.1 (e_value=8e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:57346640-57347368 transcript_region:SL2.40ch03:57346640..57347368+ go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B9GXZ7_POPTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00031334g0012.1 protein AED:0.35 eAED:0.47 QI:0|0|0|1|1|1|2|0|245 NbS00031334g0010.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|76; (*ITAG) Solyc03g112970.1.1 (e_value=2e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:57344127-57344960 transcript_region:SL2.40ch03:57344127..57344960+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00023563g0007.1 protein AED:0.30 eAED:0.31 QI:285|0.62|0.66|0.88|0.62|0.66|9|215|484; (*GB) gi|225423464|ref|XP_002274070.1| (e_value=0.0) PREDICTED: magnesium transporter MRS2-5 [Vitis vinifera];; (*SWP) sp|Q9ZPR4|MRS25_ARATH (e_value=6e-172) Magnesium transporter MRS2-5 OS=Arabidopsis thaliana GN=MRS2-5 PE=1 SV=1;; (*TAIR) AT2G03620.2 (e_value=4e-173) | Symbols: MGT3, MRS2-5 | magnesium transporter 3 | chr2:1100489-1102168 REVERSE LENGTH=421;; (*ITAG) Solyc05g012220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5500851-5506199 transcript_region:SL2.40ch05:5500851..5506199+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-5 (AHRD V1 **** MRS25_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00023563g0008.1 protein AED:0.00 eAED:0.00 QI:419|1|1|1|1|1|3|188|412; (*GB) gi|297738090|emb|CBI27291.3| (e_value=9e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G61040.1 (e_value=8e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590;; (*ITAG) Solyc05g012230.2.1 (e_value=2e-110) genomic_reference:SL2.40ch05 gene_region:5506427-5508814 transcript_region:SL2.40ch05:5506427..5508814- functional_description:"Unknown Protein (AHRD V1)"; NbS00023563g0006.1 protein AED:0.37 eAED:0.40 QI:191|0.5|0.66|1|0|0|3|333|30 NbS00014706g0008.1 protein AED:0.29 eAED:0.29 QI:143|0.8|0.87|1|0.66|0.56|16|2012|236; (*GB) gi|325516268|gb|ADZ24712.1| (e_value=8e-126) anthranilate phosphoribosyltransferase [Solanum pennellii];; (*SWP) sp|Q02166|TRPD_ARATH (e_value=5e-90) Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G17990.1 (e_value=4e-91) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444;; (*ITAG) Solyc06g071550.2.1 (e_value=5e-129) genomic_reference:SL2.40ch06 gene_region:40439408-40443221 transcript_region:SL2.40ch06:40439408..40443221+ go_terms:GO:0004048,GO:0005515 functional_description:"Anthranilate phosphoribosyltransferase (AHRD V1 **** A8IBN0_CHLRE); contains Interpro domain(s) IPR005940 Anthranilate phosphoribosyl transferase "; GO:0004048,GO:0005515 NbS00007780g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|359488913|ref|XP_002283359.2| (e_value=6e-29) PREDICTED: non-specific lipid-transfer protein AP10-like [Vitis vinifera];; (*SWP) sp|P85206|NLTP2_ACTDE (e_value=2e-24) Non-specific lipid-transfer protein 2 OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT2G15050.3 (e_value=7e-21) | Symbols: LTP, LTP7 | lipid transfer protein | chr2:6518888-6519888 FORWARD LENGTH=122;; (*ITAG) Solyc01g090350.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:75816344-75817104 transcript_region:SL2.40ch01:75816344..75817104- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00007780g0010.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|0.5|0.33|3|0|828; (*GB) gi|350538695|ref|NP_001234611.1| (e_value=0.0) AvrPto-dependent Pto-interacting protein 3 [Solanum lycopersicum];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT2G44830.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:18490398-18492779 FORWARD LENGTH=765;; (*ITAG) Solyc10g038190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20507386-20511136 transcript_region:SL2.40ch10:20507386..20511136- go_terms:GO:0005524 functional_description:"Protein kinase 5 (AHRD V1 ***- Q8W4K8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005524 NbS00007780g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=3e-35) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=3e-29) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=2e-26) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=1e-48) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00039937g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|691; (*GB) gi|10998537|gb|AAG25966.1|AF302082_1 (e_value=0.0) cytokinin-regulated kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9FIJ6|ACCR4_ARATH (e_value=0.0) Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1;; (*TAIR) AT5G47850.1 (e_value=0.0) | Symbols: CCR4 | CRINKLY4 related 4 | chr5:19378803-19381058 REVERSE LENGTH=751;; (*ITAG) Solyc11g020230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:10541737-10544073 transcript_region:SL2.40ch11:10541737..10544073- go_terms:GO:0004672,GO:0042803 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672,GO:0042803 NbS00022746g0012.1 protein AED:0.10 eAED:0.10 QI:24|1|0.5|1|1|1|2|0|219; (*GB) gi|147846590|emb|CAN79501.1| (e_value=1e-77) hypothetical protein VITISV_022688 [Vitis vinifera];; (*SWP) sp|P57681|PCYOX_ARATH (e_value=1e-71) Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1;; (*TAIR) AT5G63910.1 (e_value=9e-73) | Symbols: FCLY | farnesylcysteine lyase | chr5:25572053-25574077 REVERSE LENGTH=500;; (*ITAG) Solyc12g088020.1.1 (e_value=7e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61969217-61970695 transcript_region:SL2.40ch12:61969217..61970695+ go_terms:GO:0001735 functional_description:"Prenylcysteine oxidase 1 (AHRD V1 **** B7ZTK4_XENTR); contains Interpro domain(s) IPR010795 Prenylcysteine lyase "; GO:0001735 NbS00022746g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|1|0.5|0.33|3|0|280; (*GB) gi|359480755|ref|XP_002275222.2| (e_value=1e-131) PREDICTED: farnesylcysteine lyase-like [Vitis vinifera];; (*SWP) sp|P57681|PCYOX_ARATH (e_value=3e-122) Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1;; (*TAIR) AT5G63910.1 (e_value=2e-123) | Symbols: FCLY | farnesylcysteine lyase | chr5:25572053-25574077 REVERSE LENGTH=500;; (*ITAG) Solyc12g088020.1.1 (e_value=3e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61969217-61970695 transcript_region:SL2.40ch12:61969217..61970695+ go_terms:GO:0001735 functional_description:"Prenylcysteine oxidase 1 (AHRD V1 **** B7ZTK4_XENTR); contains Interpro domain(s) IPR010795 Prenylcysteine lyase "; GO:0001735 NbS00022746g0005.1 protein AED:0.40 eAED:0.45 QI:0|0.66|0.71|1|1|1|7|14|202; (*GB) gi|350537205|ref|NP_001234028.1| (e_value=2e-98) involved in inorganic sulfate assimilation [Solanum lycopersicum];; (*SWP) sp|O34524|YOCS_BACSU (e_value=5e-12) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT2G26900.1 (e_value=5e-100) | Symbols: | Sodium Bile acid symporter family | chr2:11475156-11477870 REVERSE LENGTH=409;; (*ITAG) Solyc05g017950.2.1 (e_value=5e-101) genomic_reference:SL2.40ch05 gene_region:19274632-19281191 transcript_region:SL2.40ch05:19274632..19281191- go_terms:GO:0015370 functional_description:"Bile acid sodium symporter (AHRD V1 **** B2A035_OPITP); contains Interpro domain(s) IPR004710 Bile acid transporter "; GO:0015370 NbS00022746g0006.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.16|1|1|6|0|165; (*GB) gi|280967729|gb|ACZ98535.1| (e_value=6e-61) transmembrane domain protein [Malus x domestica];; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-15) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT2G26900.1 (e_value=9e-58) | Symbols: | Sodium Bile acid symporter family | chr2:11475156-11477870 REVERSE LENGTH=409;; (*ITAG) Solyc05g017950.2.1 (e_value=1e-59) genomic_reference:SL2.40ch05 gene_region:19274632-19281191 transcript_region:SL2.40ch05:19274632..19281191- go_terms:GO:0015370 functional_description:"Bile acid sodium symporter (AHRD V1 **** B2A035_OPITP); contains Interpro domain(s) IPR004710 Bile acid transporter "; GO:0015370 NbS00006639g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|119|341; (*GB) gi|34558777|gb|AAQ75123.1| (e_value=7e-156) salicylic acid-induced protein 19 [Capsicum annuum];; (*SWP) sp|Q84TE6|NAC22_ARATH (e_value=3e-104) NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2;; (*TAIR) AT1G56010.2 (e_value=2e-105) | Symbols: NAC1, ANAC022 | NAC domain containing protein 1 | chr1:20946852-20949144 REVERSE LENGTH=324;; (*ITAG) Solyc07g066330.2.1 (e_value=8e-167) genomic_reference:SL2.40ch07 gene_region:65019493-65024400 transcript_region:SL2.40ch07:65019493..65024400- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HH13_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00049093g0008.1 protein AED:0.16 eAED:0.16 QI:189|1|1|1|0.77|0.8|10|388|318; (*GB) gi|356521303|ref|XP_003529296.1| (e_value=5e-164) PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max];; (*SWP) sp|Q969G6|RIFK_HUMAN (e_value=1e-47) Riboflavin kinase OS=Homo sapiens GN=RFK PE=1 SV=2;; (*TAIR) AT4G21470.1 (e_value=1e-158) | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/FMN hydrolase | chr4:11431284-11433197 FORWARD LENGTH=379;; (*ITAG) Solyc02g079100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38295598-38299881 transcript_region:SL2.40ch02:38295598..38299881+ go_terms:GO:0003919,GO:0008531 functional_description:"Riboflavin kinase (AHRD V1 **-* A8IM09_CHLRE); contains Interpro domain(s) IPR015865 Riboflavin kinase "; GO:0003919,GO:0008531 NbS00000985g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|224 NbS00000985g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|0|0|2|0|463; (*GB) gi|359476577|ref|XP_002267433.2| (e_value=2e-39) PREDICTED: proline-rich receptor-like protein kinase PERK4-like [Vitis vinifera];; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=8e-38) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=6e-39) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc03g034060.2.1 (e_value=4e-80) genomic_reference:SL2.40ch03 gene_region:10043587-10048351 transcript_region:SL2.40ch03:10043587..10048351- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00008960g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|437; (*GB) gi|118486275|gb|ABK94979.1| (e_value=3e-153) unknown [Populus trichocarpa];; (*SWP) sp|O23090|BH014_ARATH (e_value=3e-83) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=2e-84) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc01g096370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79210978-79212857 transcript_region:SL2.40ch01:79210978..79212857+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00017132g0012.1 protein AED:0.09 eAED:0.10 QI:0|1|0.8|1|1|1|5|0|366; (*GB) gi|224128956|ref|XP_002320463.1| (e_value=5e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLM3|ZDH23_ARATH (e_value=6e-77) Probable S-acyltransferase At5g41060 OS=Arabidopsis thaliana GN=At5g41060 PE=2 SV=1;; (*TAIR) AT5G41060.1 (e_value=4e-78) | Symbols: | DHHC-type zinc finger family protein | chr5:16435602-16437540 FORWARD LENGTH=410;; (*ITAG) Solyc07g052330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58159705-58161724 transcript_region:SL2.40ch07:58159705..58161724- go_terms:GO:0016409 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-** PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00017132g0016.1 protein AED:0.18 eAED:0.18 QI:665|0.95|0.85|1|0.75|0.76|21|478|910; (*GB) gi|171854675|dbj|BAG16527.1| (e_value=0.0) putative aconitase [Capsicum chinense];; (*SWP) sp|P49608|ACOC_CUCMA (e_value=0.0) Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1;; (*TAIR) AT2G05710.1 (e_value=0.0) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc07g052350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbS00017132g0011.1 protein AED:0.17 eAED:0.24 QI:0|0.14|0.12|1|1|1|8|411|542; (*GB) gi|356515280|ref|XP_003526329.1| (e_value=1e-147) PREDICTED: uncharacterized protein LOC100791485 [Glycine max];; (*SWP) sp|Q9NVH0|EXD2_HUMAN (e_value=3e-34) Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=1;; (*TAIR) AT2G32415.2 (e_value=2e-145) | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr2:13761386-13765421 REVERSE LENGTH=872;; (*ITAG) Solyc07g052340.2.1 (e_value=3e-163) genomic_reference:SL2.40ch07 gene_region:58163899-58175032 transcript_region:SL2.40ch07:58163899..58175032+ go_terms:GO:0003676,GO:0005622 functional_description:"Exosome complex exonuclease RRP6-like protein (AHRD V1 *--- D0MWN1_PHYIN); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00021481g0004.1 protein AED:0.02 eAED:0.05 QI:0|0.66|0.25|1|0.66|0.5|4|0|373; (*GB) gi|225426354|ref|XP_002266149.1| (e_value=2e-89) PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera];; (*SWP) sp|Q5SN75|P2C08_ORYSJ (e_value=3e-76) Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1;; (*TAIR) AT5G59220.1 (e_value=2e-61) | Symbols: HAI1 | highly ABA-induced PP2C gene 1 | chr5:23894672-23896497 REVERSE LENGTH=413;; (*ITAG) Solyc08g082260.1.1 (e_value=2e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62265564-62267353 transcript_region:SL2.40ch08:62265564..62267353- go_terms:GO:0004722,GO:0008022 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00032199g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|425|116; (*GB) gi|225425565|ref|XP_002265909.1| (e_value=2e-65) PREDICTED: iron sulfur cluster assembly protein 1, mitochondrial [Vitis vinifera];; (*SWP) sp|O49627|ISU1_ARATH (e_value=3e-60) Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1;; (*TAIR) AT4G22220.1 (e_value=2e-61) | Symbols: ISU1, ATISU1 | SufE/NifU family protein | chr4:11759444-11760881 REVERSE LENGTH=167;; (*ITAG) Solyc03g112900.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:57238077-57241465 transcript_region:SL2.40ch03:57238077..57241465+ go_terms:GO:0008198 functional_description:"Iron-sulfur cluster assembly scaffold protein IscU (AHRD V1 **** D0I7Q6_VIBHO); contains Interpro domain(s) IPR002871 NIF system FeS cluster assembly, NifU, N-terminal "; GO:0008198 NbS00015668g0009.1 protein AED:0.22 eAED:0.22 QI:199|1|0.83|1|1|1|6|0|710; (*GB) gi|255569839|ref|XP_002525883.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=0.0) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc03g031920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8657524-8664052 transcript_region:SL2.40ch03:8657524..8664052- go_terms:GO:0015198 functional_description:"Yellow stripe-like protein 2.1 (Fragment) (AHRD V1 ***- B4ZYE4_BRAJU); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00015668g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|133; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=3e-71) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P15688|NU2M_BETVU (e_value=2e-54) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*TAIR) AT2G07689.1 (e_value=2e-61) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00015668g0012.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|0|0|2|0|111; (*GB) gi|147841236|emb|CAN64512.1| (e_value=3e-45) hypothetical protein VITISV_004351 [Vitis vinifera];; (*SWP) sp|P15688|NU2M_BETVU (e_value=3e-28) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) Solyc10g062040.1.1 (e_value=6e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54605388-54605612 transcript_region:SL2.40ch10:54605388..54605612+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00019698g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|164|377; (*GB) gi|225452805|ref|XP_002283468.1| (e_value=4e-170) PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=2e-31) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT5G15240.1 (e_value=1e-148) | Symbols: | Transmembrane amino acid transporter family protein | chr5:4947762-4950211 FORWARD LENGTH=423;; (*ITAG) Solyc03g013160.2.1 (e_value=8e-156) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00021805g0005.1 protein AED:0.23 eAED:0.23 QI:248|1|0.85|1|0.66|0.71|7|0|215; (*GB) gi|225444750|ref|XP_002279119.1| (e_value=3e-148) PREDICTED: mps one binder kinase activator-like 1 [Vitis vinifera];; (*SWP) sp|Q8GYX0|MOB1_ARATH (e_value=9e-138) MOB kinase activator-like 1 OS=Arabidopsis thaliana GN=At4g19045 PE=2 SV=1;; (*TAIR) AT5G45550.1 (e_value=3e-140) | Symbols: | Mob1/phocein family protein | chr5:18462284-18464840 FORWARD LENGTH=215;; (*ITAG) Solyc07g041730.2.1 (e_value=3e-154) genomic_reference:SL2.40ch07 gene_region:51399399-51402969 transcript_region:SL2.40ch07:51399399..51402969+ go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6TBL6_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein "; GO:0019900 NbS00021805g0006.1 protein AED:0.29 eAED:0.29 QI:0|1|0.9|1|0.88|0.8|10|610|710; (*GB) gi|225444748|ref|XP_002279041.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-83) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G35570.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:13750101-13753383 REVERSE LENGTH=652;; (*ITAG) Solyc07g041750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51404606-51417208 transcript_region:SL2.40ch07:51404606..51417208- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00000318g0115.1 protein AED:0.07 eAED:0.07 QI:0|0.25|0.2|1|0.25|0.4|5|178|647 NbS00000318g0112.1 protein AED:0.08 eAED:0.08 QI:121|0.91|0.93|0.98|0.86|0.89|75|0|5396 NbS00000318g0203.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|1|1|2|0|156 NbS00018359g0007.1 protein AED:0.14 eAED:0.14 QI:298|0.73|0.81|1|0.73|0.68|16|199|693; (*GB) gi|255547432|ref|XP_002514773.1| (e_value=0.0) leucine zipper-ef-hand containing transmembrane protein, putative [Ricinus communis];; (*SWP) sp|Q5ZK33|LETM1_CHICK (e_value=3e-79) LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1;; (*TAIR) AT1G65540.1 (e_value=0.0) | Symbols: | LETM1-like protein | chr1:24362382-24366011 REVERSE LENGTH=736;; (*ITAG) Solyc11g008770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2938533-2950401 transcript_region:SL2.40ch11:2938533..2950401- go_terms:GO:0005509 functional_description:"LETM1 and EF-hand domain-containing protein 1, mitochondrial (AHRD V1 *--- LETM1_CHICK); contains Interpro domain(s) IPR011685 LETM1-like "; GO:0005509 NbS00002525g0019.1 protein AED:0.23 eAED:0.23 QI:5|0.8|0.83|1|0.8|1|6|278|385; (*GB) gi|225432602|ref|XP_002277920.1| (e_value=9e-132) PREDICTED: cyclin-T1-4 [Vitis vinifera];; (*SWP) sp|Q2QQS5|CCT14_ORYSJ (e_value=3e-53) Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1;; (*TAIR) AT4G19600.1 (e_value=8e-54) | Symbols: CYCT1;4 | Cyclin family protein | chr4:10673619-10676532 FORWARD LENGTH=541;; (*ITAG) Solyc09g075760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62880222-62885972 transcript_region:SL2.40ch09:62880222..62885972+ go_terms:GO:0005515,GO:0004693 functional_description:"Cyclin T1 (AHRD V1 **** Q6EEW1_MEDTR); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515,GO:0004693 NbS00002525g0013.1 protein AED:0.38 eAED:0.70 QI:0|0|0|1|1|1|2|0|158 NbS00022063g0002.1 protein AED:0.02 eAED:0.04 QI:0|0.66|0|1|1|1|4|0|385; (*GB) gi|359495341|ref|XP_003634959.1| (e_value=6e-79) PREDICTED: uncharacterized protein LOC100852510 [Vitis vinifera];; (*SWP) sp|P00302|STEL_TOXVR (e_value=6e-21) Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1;; (*TAIR) AT1G45063.2 (e_value=2e-27) | Symbols: | copper ion binding;electron carriers | chr1:17034068-17034886 REVERSE LENGTH=272;; (*ITAG) Solyc10g081520.1.1 (e_value=3e-132) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61894841-61896775 transcript_region:SL2.40ch10:61894841..61896775+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- C7AE91_WHEAT); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00022063g0009.1 protein AED:0.10 eAED:0.10 QI:183|1|0.90|1|1|1|11|285|785; (*GB) gi|115361539|gb|ABI95860.1| (e_value=0.0) methionine synthase [Nicotiana suaveolens];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00022063g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.6|0.66|1|0.8|0.83|6|329|188; (*GB) gi|357501685|ref|XP_003621131.1| (e_value=4e-86) V-type proton ATPase subunit d2 [Medicago truncatula];; (*SWP) sp|Q9LHA4|VA0D2_ARATH (e_value=3e-85) V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1;; (*TAIR) AT3G28715.1 (e_value=2e-86) | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10778025-10780350 FORWARD LENGTH=351;; (*ITAG) Solyc10g081530.1.1 (e_value=3e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61897645-61902538 transcript_region:SL2.40ch10:61897645..61902538- go_terms:GO:0033179,GO:0033177 functional_description:"V-type proton ATPase subunit d 1 (AHRD V1 ***- D3PHZ2_9MAXI); contains Interpro domain(s) IPR016727 ATPase, V0 complex, subunit D "; GO:0033179,GO:0033177 NbS00022063g0104.1 protein AED:0.19 eAED:0.19 QI:189|1|1|1|1|1|10|433|497 NbS00016802g0010.1 protein AED:0.33 eAED:0.35 QI:0|0.4|0.18|0.90|0.6|0.72|11|0|491; (*GB) gi|225442119|ref|XP_002274016.1| (e_value=2e-140) PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1 [Vitis vinifera];; (*TAIR) AT1G54150.1 (e_value=1e-73) | Symbols: | E3 Ubiquitin ligase family protein | chr1:20215480-20217303 FORWARD LENGTH=383;; (*ITAG) Solyc12g049330.1.1 (e_value=1e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46262684-46267398 transcript_region:SL2.40ch12:46262684..46267398- functional_description:"Zinc finger family protein (AHRD V1 ***- D7KLF2_ARALY)"; NbS00001176g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|0|1|0|82; (*GB) gi|255564212|ref|XP_002523103.1| (e_value=3e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02360.1 (e_value=4e-18) | Symbols: | Protein of unknown function, DUF538 | chr4:1041179-1041643 FORWARD LENGTH=154;; (*ITAG) Solyc09g075230.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62492731-62493246 transcript_region:SL2.40ch09:62492731..62493246- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00001176g0002.1 protein AED:0.36 eAED:0.76 QI:0|0|0|1|0|0|2|0|64 NbS00003774g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.5|0.75|1|1|4|0|326; (*GB) gi|14971013|dbj|BAB62108.1| (e_value=0.0) GDP-D-mannose pyrophosphorylase [Nicotiana tabacum];; (*SWP) sp|O22287|GMPP1_ARATH (e_value=0.0) Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1;; (*TAIR) AT2G39770.2 (e_value=0.0) | Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361;; (*ITAG) Solyc03g096730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52526975-52529237 transcript_region:SL2.40ch03:52526975..52529237+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 1"; GO:0004475,GO:0051015 NbS00003774g0012.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.33|3|0|276; (*GB) gi|359496983|ref|XP_003635390.1| (e_value=4e-61) PREDICTED: uncharacterized protein LOC100854626 [Vitis vinifera];; (*TAIR) AT2G17080.1 (e_value=7e-25) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263;; (*ITAG) Solyc02g083000.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00023157g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|109; (*GB) gi|351630233|gb|AEQ55271.1| (e_value=4e-30) expansin [Breonia chinensis];; (*SWP) sp|O80932|EXPA3_ARATH (e_value=8e-27) Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1;; (*TAIR) AT2G37640.1 (e_value=6e-28) | Symbols: ATEXPA3, ATEXP3, ATHEXP ALPHA 1.9, EXP3 | Barwin-like endoglucanases superfamily protein | chr2:15788077-15789812 REVERSE LENGTH=262;; (*ITAG) Solyc09g010860.2.1 (e_value=3e-32) genomic_reference:SL2.40ch09 gene_region:4181506-4184618 transcript_region:SL2.40ch09:4181506..4184618- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00009997g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|224066277|ref|XP_002302060.1| (e_value=4e-32) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g066250.1.1 (e_value=2e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60275950-60276354 transcript_region:SL2.40ch09:60275950..60276354+ go_terms:GO:0005622 functional_description:"Transcriptional regulator SUPERMAN (AHRD V1 *--- SUP_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00046215g0003.1 protein AED:0.38 eAED:0.52 QI:0|0.6|0.5|1|1|1|6|0|190; (*GB) gi|224141909|ref|XP_002324303.1| (e_value=5e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42563|APT2_ARATH (e_value=5e-101) Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1;; (*TAIR) AT5G11160.1 (e_value=2e-110) | Symbols: APT5 | adenine phosphoribosyltransferase 5 | chr5:3550774-3551986 FORWARD LENGTH=191;; (*ITAG) Solyc04g077970.2.1 (e_value=3e-92) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00001394g0001.1 protein AED:0.17 eAED:0.19 QI:77|1|0.5|1|1|1|2|0|155; (*GB) gi|297744300|emb|CBI37270.3| (e_value=4e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G24750.1 (e_value=8e-13) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9036735-9037564 FORWARD LENGTH=169;; (*ITAG) Solyc09g061730.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:55813029-55815082 transcript_region:SL2.40ch09:55813029..55815082- functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 ***- Q9LRY4_ARATH)"; NbS00008134g0005.1 protein AED:0.00 eAED:0.00 QI:144|1|1|1|1|1|2|159|216; (*GB) gi|225455533|ref|XP_002266318.1| (e_value=2e-77) PREDICTED: uncharacterized protein LOC100265251 [Vitis vinifera];; (*TAIR) AT5G62280.1 (e_value=9e-48) | Symbols: | Protein of unknown function (DUF1442) | chr5:25017165-25017985 FORWARD LENGTH=236;; (*ITAG) Solyc03g083490.2.1 (e_value=5e-113) genomic_reference:SL2.40ch03 gene_region:46964587-46965347 transcript_region:SL2.40ch03:46964587..46965347+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00008134g0108.1 protein AED:0.36 eAED:0.36 QI:0|1|0.8|1|0.5|1|5|0|290 NbS00008134g0102.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|1|2|354|763 NbS00008134g0217.1 protein AED:0.14 eAED:0.16 QI:0|0.58|0.46|0.84|0.75|0.69|13|117|499 NbS00008134g0210.1 protein AED:0.04 eAED:0.04 QI:642|1|1|1|1|1|5|210|231 NbS00015967g0016.1 protein AED:0.06 eAED:0.06 QI:18|1|1|1|1|1|2|366|444; (*GB) gi|147819293|emb|CAN68960.1| (e_value=4e-41) hypothetical protein VITISV_019275 [Vitis vinifera];; (*SWP) sp|Q9LIB3|BAG8_ARATH (e_value=6e-22) BAG family molecular chaperone regulator 8, chloroplastic OS=Arabidopsis thaliana GN=BAG1 PE=1 SV=1;; (*TAIR) AT3G29310.1 (e_value=5e-23) | Symbols: | calmodulin-binding protein-related | chr3:11249712-11251452 FORWARD LENGTH=551;; (*ITAG) Solyc02g088660.2.1 (e_value=1e-121) genomic_reference:SL2.40ch02 gene_region:45251845-45253703 transcript_region:SL2.40ch02:45251845..45253703- functional_description:"AT3g29310/MUO10_1 (AHRD V1 *-*- Q9LIB3_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00015967g0006.1 protein AED:0.01 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|457; (*GB) gi|147819292|emb|CAN68959.1| (e_value=2e-29) hypothetical protein VITISV_019273 [Vitis vinifera];; (*ITAG) Solyc02g088670.1.1 (e_value=5e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45254686-45256068 transcript_region:SL2.40ch02:45254686..45256068- go_terms:GO:0003700 functional_description:"Zinc-finger protein 1 (AHRD V1 *-*- B6TS25_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00015967g0020.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0.33|0.25|4|0|741; (*GB) gi|147819295|emb|CAN68962.1| (e_value=0.0) hypothetical protein VITISV_019277 [Vitis vinifera];; (*SWP) sp|Q9FLZ9|PP405_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1;; (*TAIR) AT5G39350.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15750929-15752962 FORWARD LENGTH=677;; (*ITAG) Solyc02g088650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45249368-45251410 transcript_region:SL2.40ch02:45249368..45251410- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00015967g0018.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.25|1|0.33|0|4|647|152; (*GB) gi|359488963|ref|XP_002284262.2| (e_value=2e-59) PREDICTED: membrane-anchored ubiquitin-fold protein 2 [Vitis vinifera];; (*SWP) sp|Q8LCS8|MUB2_ARATH (e_value=1e-43) Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1;; (*TAIR) AT5G15460.2 (e_value=1e-44) | Symbols: MUB2 | membrane-anchored ubiquitin-fold protein 2 | chr5:5018947-5020105 REVERSE LENGTH=124;; (*ITAG) Solyc02g088620.2.1 (e_value=2e-66) genomic_reference:SL2.40ch02 gene_region:45229936-45232755 transcript_region:SL2.40ch02:45229936..45232755- functional_description:"Membrane-anchored ubiquitin-fold protein 1 (AHRD V1 ***- D7LAJ7_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00015967g0021.1 protein AED:0.31 eAED:0.31 QI:220|0.66|0.71|1|0.66|0.71|7|0|563; (*GB) gi|225452954|ref|XP_002284273.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 13-like [Vitis vinifera];; (*SWP) sp|Q0WV13|GAUTD_ARATH (e_value=0.0) Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13 PE=2 SV=1;; (*TAIR) AT3G01040.2 (e_value=0.0) | Symbols: GAUT13 | galacturonosyltransferase 13 | chr3:9392-11979 FORWARD LENGTH=532;; (*ITAG) Solyc02g088630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45234229-45239072 transcript_region:SL2.40ch02:45234229..45239072- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00015967g0104.1 protein AED:0.07 eAED:0.07 QI:198|1|1|1|0.9|0.81|11|310|966 NbS00015967g0102.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0|2|432|180 NbS00015967g0103.1 protein AED:0.17 eAED:0.17 QI:259|1|0.5|1|0|0|2|0|730 NbS00015967g0116.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|1228|208 NbS00015967g0101.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|410 NbS00015967g0203.1 protein AED:0.18 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|192 NbS00015967g0201.1 protein AED:0.22 eAED:0.22 QI:466|1|0.5|1|0|0|2|0|268 NbS00022344g0009.1 protein AED:0.20 eAED:0.20 QI:657|0.8|0.66|0.83|0.8|0.66|6|0|364; (*GB) gi|225442168|ref|XP_002276168.1| (e_value=0.0) PREDICTED: protein Brevis radix-like 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8GYL9|BRXL2_ARATH (e_value=3e-161) Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1;; (*TAIR) AT3G14000.2 (e_value=3e-162) | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr3:4631170-4633353 REVERSE LENGTH=374;; (*ITAG) Solyc06g062880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36075443-36081569 transcript_region:SL2.40ch06:36075443..36081569+ functional_description:"Protein Brevis radix-like 2 (AHRD V1 ***- BRXL2_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; NbS00022344g0003.1 protein AED:0.28 eAED:0.28 QI:551|0.75|1|1|0.75|0.6|5|177|186; (*GB) gi|77403675|dbj|BAE46416.1| (e_value=3e-23) TATA binding protein associated factor [Solanum tuberosum];; (*TAIR) AT1G17440.2 (e_value=3e-19) | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683;; (*ITAG) Solyc06g062900.2.1 (e_value=5e-29) genomic_reference:SL2.40ch06 gene_region:36089085-36092096 transcript_region:SL2.40ch06:36089085..36092096+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- B6K2I7_SCHJY); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00019994g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|225439370|ref|XP_002270030.1| (e_value=7e-61) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=3e-17) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G06470.1 (e_value=9e-42) | Symbols: | Glutaredoxin family protein | chr5:1974659-1975378 REVERSE LENGTH=239;; (*ITAG) Solyc11g006430.1.1 (e_value=8e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1136221-1137306 transcript_region:SL2.40ch11:1136221..1137306- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *--- D7LZQ8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00019994g0009.1 protein AED:0.39 eAED:0.39 QI:186|1|1|1|0.33|0.5|4|338|159; (*GB) gi|55294668|emb|CAH69231.1| (e_value=1e-95) putative ML domain protein [Nicotiana glauca];; (*TAIR) AT3G11780.1 (e_value=7e-50) | Symbols: | MD-2-related lipid recognition domain-containing protein / ML domain-containing protein | chr3:3724326-3725476 REVERSE LENGTH=153;; (*ITAG) Solyc01g006900.2.1 (e_value=7e-81) genomic_reference:SL2.40ch01 gene_region:1473003-1478670 transcript_region:SL2.40ch01:1473003..1478670- functional_description:"Phosphatidylglycerol/phosphatidylinositol transfer protein (AHRD V1 -**- C5M4H0_CANTT); contains Interpro domain(s) IPR003172 MD-2-related lipid-recognition "; NbS00019994g0012.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|0|0|3|0|336; (*GB) gi|255568345|ref|XP_002525147.1| (e_value=1e-122) cysteine protease, putative [Ricinus communis];; (*SWP) sp|Q9FGR9|CEP1_ARATH (e_value=4e-88) KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1;; (*TAIR) AT1G06260.1 (e_value=6e-111) | Symbols: | Cysteine proteinases superfamily protein | chr1:1916449-1917585 FORWARD LENGTH=343;; (*ITAG) Solyc07g053460.2.1 (e_value=7e-150) genomic_reference:SL2.40ch07 gene_region:59227509-59229907 transcript_region:SL2.40ch07:59227509..59229907+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00019994g0102.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|191 NbS00019994g0104.1 protein AED:0.15 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|112 NbS00019994g0103.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|143 NbS00002463g0003.1 protein AED:0.30 eAED:0.97 QI:0|0|0|1|1|1|2|0|82 NbS00002463g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|353; (*GB) gi|356534929|ref|XP_003536003.1| (e_value=3e-159) PREDICTED: probable galacturonosyltransferase-like 7-like [Glycine max];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=1e-156) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=1e-157) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc09g075560.1.1 (e_value=9e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62750328-62751431 transcript_region:SL2.40ch09:62750328..62751431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00016385g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|485; (*GB) gi|225455876|ref|XP_002275164.1| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=1e-179) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc03g119690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62293271-62294875 transcript_region:SL2.40ch03:62293271..62294875- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JAA3_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00016385g0014.1 protein AED:0.30 eAED:0.30 QI:275|1|1|1|0.5|0.33|3|314|159; (*GB) gi|224099343|ref|XP_002311446.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q31QE7|CLPS_SYNE7 (e_value=8e-25) ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1;; (*TAIR) AT1G68660.1 (e_value=2e-77) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr1:25778058-25779083 REVERSE LENGTH=159;; (*ITAG) Solyc03g119700.2.1 (e_value=6e-105) genomic_reference:SL2.40ch03 gene_region:62299092-62303181 transcript_region:SL2.40ch03:62299092..62303181- go_terms:GO:0030163 functional_description:"ATP-dependent Clp protease adaptor protein ClpS containing protein (AHRD V1 ***- B4FRY9_MAIZE); contains Interpro domain(s) IPR003769 Adaptor protein ClpS, core "; GO:0030163 NbS00016385g0016.1 protein AED:0.12 eAED:0.12 QI:135|1|1|1|0.75|0.84|13|380|436; (*GB) gi|297734177|emb|CBI15424.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LS39|CCR4C_ARATH (e_value=2e-160) Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2;; (*TAIR) AT3G18500.3 (e_value=4e-162) | Symbols: | DNAse I-like superfamily protein | chr3:6352544-6355297 FORWARD LENGTH=449;; (*ITAG) Solyc03g119710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62304368-62314589 transcript_region:SL2.40ch03:62304368..62314589+ go_terms:GO:0016787 functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector (AHRD V1 **-- C0NN15_AJECG); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0016787 NbS00016385g0017.1 protein AED:0.11 eAED:0.13 QI:152|0.88|0.89|1|0.83|0.84|19|284|726; (*GB) gi|225455880|ref|XP_002275327.1| (e_value=0.0) PREDICTED: protein CASP [Vitis vinifera];; (*SWP) sp|Q9LS42|CASP_ARATH (e_value=0.0) Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2;; (*TAIR) AT3G18480.1 (e_value=0.0) | Symbols: AtCASP, CASP | CCAAT-displacement protein alternatively spliced product | chr3:6336924-6341596 FORWARD LENGTH=689;; (*ITAG) Solyc06g069210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39360592-39372973 transcript_region:SL2.40ch06:39360592..39372973+ go_terms:GO:0003677,GO:0003682,GO:0016564 functional_description:"CASP-like protein (AHRD V1 ***- D0NFX2_PHYIN); contains Interpro domain(s) IPR012955 CASP, C-terminal "; GO:0003677,GO:0003682,GO:0016564 NbS00016385g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.87|0.77|0.88|0.87|0.88|9|0|693; (*GB) gi|225455868|ref|XP_002274587.1| (e_value=0.0) PREDICTED: lysosomal acid lipase/cholesteryl ester hydrolase-like [Vitis vinifera];; (*SWP) sp|Q3U4B4|LIPN_MOUSE (e_value=9e-24) Lipase member N OS=Mus musculus GN=Lipn PE=2 SV=1;; (*TAIR) AT1G73920.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27791194-27794698 FORWARD LENGTH=704;; (*ITAG) Solyc03g119720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62315920-62322564 transcript_region:SL2.40ch03:62315920..62322564+ go_terms:GO:0016298 functional_description:"Lipase family protein (AHRD V1 **** D7KGE3_ARALY); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0016298 NbS00013761g0004.1 protein AED:0.14 eAED:0.14 QI:204|0.66|1|1|0.33|0.25|4|66|462; (*GB) gi|224136193|ref|XP_002322267.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=3e-21) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT3G48610.1 (e_value=0.0) | Symbols: NPC6 | non-specific phospholipase C6 | chr3:18011653-18013959 REVERSE LENGTH=520;; (*ITAG) Solyc03g019670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6624873-6627974 transcript_region:SL2.40ch03:6624873..6627974- go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7LEV5_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00013761g0018.1 protein AED:0.27 eAED:0.27 QI:0|0.93|0.81|1|1|1|16|0|616; (*GB) gi|359491097|ref|XP_003634219.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH79|Y5064_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1;; (*TAIR) AT5G50530.1 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548;; (*ITAG) Solyc03g019680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6629630-6635879 transcript_region:SL2.40ch03:6629630..6635879- functional_description:"CBS domain containing protein (AHRD V1 ***- B6U1W0_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00009603g0011.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|568; (*GB) gi|255556864|ref|XP_002519465.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc10g083950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62970502-62972211 transcript_region:SL2.40ch10:62970502..62972211- functional_description:"Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00009603g0015.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.42|1|0.66|0.57|7|59|210; (*GB) gi|390134563|gb|AFL56269.1| (e_value=4e-82) cyclophilin-like peptidyl-prolyl cis-trans isomerase [Cirsium arvense];; (*SWP) sp|Q94A16|CP21C_ARATH (e_value=9e-54) Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2;; (*TAIR) AT3G66654.2 (e_value=2e-70) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:2088694-2090297 FORWARD LENGTH=236;; (*ITAG) Solyc10g083930.1.1 (e_value=3e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62957621-62961163 transcript_region:SL2.40ch10:62957621..62961163- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D6PDH0_9BACT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00009603g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.66|1|0.5|0.33|3|17|503; (*GB) gi|255556860|ref|XP_002519463.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|O04375|2A5A_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform OS=Arabidopsis thaliana GN=B'ALPHA PE=1 SV=1;; (*TAIR) AT5G03470.1 (e_value=0.0) | Symbols: ATB' ALPHA | Protein phosphatase 2A regulatory B subunit family protein | chr5:866795-868872 FORWARD LENGTH=495;; (*ITAG) Solyc10g083920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00009603g0014.1 protein AED:0.36 eAED:0.38 QI:0|1|0.66|1|1|1|3|102|89; (*GB) gi|225441167|ref|XP_002268582.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100258894 [Vitis vinifera];; (*TAIR) AT2G36835.1 (e_value=2e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15449839-15451307 REVERSE LENGTH=124;; (*ITAG) Solyc10g083910.1.1 (e_value=1e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62945009-62947449 transcript_region:SL2.40ch10:62945009..62947449- functional_description:"Unknown Protein (AHRD V1)"; NbS00009603g0005.1 protein AED:0.67 eAED:0.81 QI:0|0|0|0.5|1|1|4|0|209 NbS00009603g0115.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.57|0.71|0.83|0.57|7|0|262 NbS00009603g0110.1 protein AED:0.23 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|259 NbS00009603g0114.1 protein AED:0.59 eAED:0.63 QI:0|0|0|0.66|0|0.33|3|0|132 NbS00009603g0113.1 protein AED:0.73 eAED:0.89 QI:0|0|0|0.5|0.66|1|4|0|181 NbS00009603g0112.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|248 NbS00035667g0004.1 protein AED:0.30 eAED:0.30 QI:368|1|1|1|0.75|0.61|13|427|604; (*GB) gi|356512695|ref|XP_003525052.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290-like [Glycine max];; (*SWP) sp|C0LGT1|Y5129_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1;; (*TAIR) AT5G10290.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr5:3235462-3238171 REVERSE LENGTH=613;; (*ITAG) Solyc03g078520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44611437-44617610 transcript_region:SL2.40ch03:44611437..44617610+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00037592g0010.1 protein AED:0.08 eAED:0.08 QI:187|1|1|1|0.66|0.6|10|296|541; (*GB) gi|255539376|ref|XP_002510753.1| (e_value=2e-176) electron transporter, putative [Ricinus communis];; (*TAIR) AT1G76620.1 (e_value=2e-116) | Symbols: | Protein of unknown function, DUF547 | chr1:28756787-28759131 FORWARD LENGTH=527;; (*ITAG) Solyc04g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64020719-64024389 transcript_region:SL2.40ch04:64020719..64024389+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *--- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00015634g0010.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0.66|0.66|0|0.33|3|174|120 NbS00015634g0013.1 protein AED:0.22 eAED:0.22 QI:767|0.92|0.8|0.93|0.57|0.6|15|0|607; (*GB) gi|296082093|emb|CBI21098.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84VX3|ALF4_ARATH (e_value=3e-130) Aberrant root formation protein 4 OS=Arabidopsis thaliana GN=ALF4 PE=1 SV=2;; (*TAIR) AT5G11030.2 (e_value=1e-131) | Symbols: ALF4 | aberrant lateral root formation 4 | chr5:3490993-3495078 REVERSE LENGTH=602;; (*ITAG) Solyc01g094670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77873933-77875998 transcript_region:SL2.40ch01:77873933..77875998- functional_description:"Aberrant root formation protein 4 (AHRD V1 ***- ALF4_ARATH)"; NbS00031764g0010.1 protein AED:0.17 eAED:0.19 QI:13|0.6|0.5|1|0.6|0.83|6|0|720; (*GB) gi|224093406|ref|XP_002309914.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60560.1 (e_value=0.0) | Symbols: | SWIM zinc finger family protein | chr1:22308791-22311277 REVERSE LENGTH=703;; (*ITAG) Solyc04g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3283806-3292746 transcript_region:SL2.40ch04:3283806..3292746+ go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 ***- D7MH91_ARALY); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0008270 NbS00031764g0007.1 protein AED:0.23 eAED:0.23 QI:90|1|1|1|0.88|0.8|10|338|359; (*GB) gi|82400126|gb|ABB72802.1| (e_value=0.0) L-allo-threonine aldolase-related protein [Solanum tuberosum];; (*SWP) sp|O07051|LTAA_AERJA (e_value=1e-98) L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1;; (*TAIR) AT1G08630.4 (e_value=0.0) | Symbols: THA1 | threonine aldolase 1 | chr1:2743948-2745685 REVERSE LENGTH=358;; (*ITAG) Solyc04g009960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3280106-3284080 transcript_region:SL2.40ch04:3280106..3284080+ go_terms:GO:0008732 functional_description:"L-allo-threonine aldolase (AHRD V1 **** D7RJ69_CARPA); contains Interpro domain(s) IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase "; GO:0008732 NbS00023834g0005.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|253; (*GB) gi|225439404|ref|XP_002263705.1| (e_value=4e-68) PREDICTED: transcription factor TGA4-like [Vitis vinifera];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=1e-19) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT1G58330.1 (e_value=6e-43) | Symbols: ZW2 | transcription factor-related | chr1:21641150-21641827 FORWARD LENGTH=225;; (*ITAG) Solyc09g005610.2.1 (e_value=4e-124) genomic_reference:SL2.40ch09 gene_region:422346-423916 transcript_region:SL2.40ch09:422346..423916- functional_description:"BZIP transcription factor (AHRD V1 *-*- Q8W5R8_ORYSA)"; NbS00044445g0004.1 protein AED:0.17 eAED:0.23 QI:0|1|0|1|1|1|2|0|380; (*GB) gi|224080117|ref|XP_002306022.1| (e_value=4e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10Q07|NNJA1_ORYSJ (e_value=6e-44) Ninja-family protein Os03g0214200 OS=Oryza sativa subsp. japonica GN=Os03g0214200 PE=2 SV=1;; (*TAIR) AT3G29575.4 (e_value=6e-42) | Symbols: AFP3 | ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231;; (*ITAG) Solyc02g088910.2.1 (e_value=1e-124) genomic_reference:SL2.40ch02 gene_region:45411058-45413952 transcript_region:SL2.40ch02:45411058..45413952- go_terms:GO:0005515 functional_description:"Ninja-family protein 3 (AHRD V1 ***- NNJA3_WHEAT); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515 NbS00056989g0003.1 protein AED:0.20 eAED:0.20 QI:210|1|1|1|0.8|1|6|332|183; (*GB) gi|225450529|ref|XP_002281419.1| (e_value=2e-114) PREDICTED: protein ECHIDNA [Vitis vinifera];; (*SWP) sp|Q8LEK2|FA18_ARATH (e_value=1e-103) Protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=2 SV=1;; (*TAIR) AT1G09330.1 (e_value=1e-104) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). | chr1:3013003-3014903 REVERSE LENGTH=186;; (*ITAG) Solyc06g073270.2.1 (e_value=2e-132) genomic_reference:SL2.40ch06 gene_region:41534966-41538784 transcript_region:SL2.40ch06:41534966..41538784- go_terms:GO:0005515 functional_description:"Golgi apparatus membrane protein tvp23 (AHRD V1 **-- C5JI99_AJEDS); contains Interpro domain(s) IPR008564 Protein of unknown function DUF846, eukaryotic "; GO:0005515 NbS00032027g0008.1 protein AED:0.08 eAED:0.09 QI:0|0.66|0.25|0.75|1|1|4|0|750; (*GB) gi|359484356|ref|XP_002280856.2| (e_value=3e-86) PREDICTED: uncharacterized protein LOC100250746 [Vitis vinifera];; (*ITAG) Solyc12g007140.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1578429-1581743 transcript_region:SL2.40ch12:1578429..1581743- functional_description:"Genomic DNA chromosome 3 P1 clone MSD24 (AHRD V1 *-*- Q9LJ43_ARATH)"; NbS00032027g0007.1 protein AED:0.43 eAED:0.43 QI:200|0.6|0.66|0.83|0.4|0.66|6|0|226; (*GB) gi|255546457|ref|XP_002514288.1| (e_value=5e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20120.1 (e_value=6e-100) | Symbols: COV1 | Protein of unknown function (DUF502) | chr2:8687568-8689321 REVERSE LENGTH=268;; (*ITAG) Solyc12g007130.1.1 (e_value=7e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1570078-1576401 transcript_region:SL2.40ch12:1570078..1576401- functional_description:"Integral membrane protein (AHRD V1 **-- A8JE84_CHLRE); contains Interpro domain(s) IPR007462 Protein of unknown function DUF502 "; NbS00040664g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|64420807|gb|AAY41426.1| (e_value=2e-63) putative L24 ribosomal protein [Ipomoea batatas];; (*SWP) sp|P51414|RL261_ARATH (e_value=7e-60) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2;; (*TAIR) AT3G49910.1 (e_value=6e-61) | Symbols: | Translation protein SH3-like family protein | chr3:18504311-18504751 FORWARD LENGTH=146;; (*ITAG) Solyc02g064670.1.1 (e_value=1e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30328162-30328602 transcript_region:SL2.40ch02:30328162..30328602+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L26-like 1 (AHRD V1 ***- B7TJ03_PIG); contains Interpro domain(s) IPR005756 Ribosomal protein L26, eukaryotic/archaeal "; GO:0003735,GO:0003723 NbS00040664g0008.1 protein AED:0.20 eAED:0.20 QI:33|1|1|1|0.8|1|6|392|335; (*GB) gi|60279272|emb|CAA63968.1| (e_value=1e-172) pom30 [Solanum tuberosum];; (*SWP) sp|Q9FJX3|VDAC2_ARATH (e_value=4e-124) Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1;; (*TAIR) AT5G67500.1 (e_value=3e-125) | Symbols: VDAC2, ATVDAC2 | voltage dependent anion channel 2 | chr5:26935223-26937123 FORWARD LENGTH=276;; (*ITAG) Solyc02g092440.2.1 (e_value=6e-175) genomic_reference:SL2.40ch02 gene_region:48072629-48076554 transcript_region:SL2.40ch02:48072629..48076554- go_terms:GO:0008308 functional_description:"Mitochondrial porin (Voltage-dependent anion channel) outer membrane protein (AHRD V1 **** C4R1Z2_PICPG); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00059441g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|45935146|gb|AAS79604.1| (e_value=0.0) putative pentatricopeptide repeat-containing protein [Ipomoea trifida];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=4e-120) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=3e-121) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc11g066920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49802209-49803954 transcript_region:SL2.40ch11:49802209..49803954- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00059441g0003.1 protein AED:0.28 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|98; (*ITAG) Solyc12g044970.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00059441g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|45935146|gb|AAS79604.1| (e_value=7e-57) putative pentatricopeptide repeat-containing protein [Ipomoea trifida];; (*SWP) sp|O49399|PP321_ARATH (e_value=3e-21) Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=2 SV=2;; (*TAIR) AT4G18840.1 (e_value=2e-22) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=545;; (*ITAG) Solyc11g066920.1.1 (e_value=8e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49802209-49803954 transcript_region:SL2.40ch11:49802209..49803954- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00025369g0003.1 protein AED:0.16 eAED:0.16 QI:41|0.83|1|1|0.83|0.85|7|241|316; (*GB) gi|225456573|ref|XP_002265768.1| (e_value=5e-97) PREDICTED: rhomboid protein 1, mitochondrial [Vitis vinifera];; (*SWP) sp|P53259|PCP1_YEAST (e_value=3e-15) Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1;; (*TAIR) AT1G18600.1 (e_value=1e-76) | Symbols: ATRBL12, RBL12 | RHOMBOID-like protein 12 | chr1:6400647-6402587 FORWARD LENGTH=336;; (*ITAG) Solyc12g038590.1.1 (e_value=9e-80) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:36033434-36038370 transcript_region:SL2.40ch12:36033434..36038370+ go_terms:GO:0016021 functional_description:"Rhomboid protease (AHRD V1 *--- B3LIC5_YEAS1); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00011028g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|225461658|ref|XP_002283128.1| (e_value=2e-31) PREDICTED: uncharacterized protein LOC100257263 [Vitis vinifera];; (*TAIR) AT1G06340.1 (e_value=2e-29) | Symbols: | Plant Tudor-like protein | chr1:1933583-1933987 REVERSE LENGTH=134;; (*ITAG) Solyc06g072450.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41080201-41080725 transcript_region:SL2.40ch06:41080201..41080725- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00011028g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0|0.75|0.33|0.5|4|0|154; (*GB) gi|225456377|ref|XP_002284092.1| (e_value=2e-46) PREDICTED: HVA22-like protein e [Vitis vinifera];; (*SWP) sp|Q9FED2|HA22E_ARATH (e_value=3e-38) HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1;; (*TAIR) AT5G50720.1 (e_value=3e-39) | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | chr5:20633442-20634502 REVERSE LENGTH=116;; (*ITAG) Solyc04g014420.2.1 (e_value=8e-58) genomic_reference:SL2.40ch04 gene_region:4663745-4664930 transcript_region:SL2.40ch04:4663745..4664930+ functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-- C1BUJ7_9MAXI); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00011028g0012.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.8|0.9|0.77|0.7|10|427|506; (*GB) gi|224094965|ref|XP_002310307.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1D6|RBK1_ARATH (e_value=6e-158) Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1;; (*TAIR) AT5G65530.1 (e_value=2e-161) | Symbols: | Protein kinase superfamily protein | chr5:26190844-26192826 REVERSE LENGTH=456;; (*ITAG) Solyc11g010730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3769620-3777208 transcript_region:SL2.40ch11:3769620..3777208- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011028g0013.1 protein AED:0.23 eAED:0.49 QI:80|0|0|0.90|0.3|0.54|11|0|310; (*GB) gi|356515685|ref|XP_003526529.1| (e_value=5e-74) PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max];; (*TAIR) AT1G09910.1 (e_value=1e-74) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc04g014430.1.1 (e_value=2e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4665390-4670951 transcript_region:SL2.40ch04:4665390..4670951- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00002609g0008.1 protein AED:0.03 eAED:0.03 QI:0|0.88|0.7|1|0.66|0.7|10|0|652; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT1G49760.2 (e_value=0.0) | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671;; (*ITAG) Solyc12g088720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00030487g0018.1 protein AED:0.08 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|876; (*GB) gi|388540218|gb|AFK64817.1| (e_value=0.0) translation elongation factor 2 [Prunus persica];; (*SWP) sp|O23755|EF2_BETVU (e_value=0.0) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT1G56070.1 (e_value=0.0) | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843;; (*ITAG) Solyc08g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49546793-49552256 transcript_region:SL2.40ch08:49546793..49552256- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00030487g0017.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0.5|0|3|0|569; (*GB) gi|19743740|gb|AAL92461.1| (e_value=0.0) putative glucosyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-164) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36780.1 (e_value=2e-55) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15417618-15419108 REVERSE LENGTH=496;; (*ITAG) Solyc04g016200.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:6972353-6973708 transcript_region:SL2.40ch04:6972353..6973708+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 **** D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00030487g0005.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|356517704|ref|XP_003527526.1| (e_value=4e-34) PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Glycine max];; (*SWP) sp|Q8L9W3|ATL23_ARATH (e_value=1e-23) E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2;; (*TAIR) AT5G42200.1 (e_value=8e-25) | Symbols: | RING/U-box superfamily protein | chr5:16860523-16861014 FORWARD LENGTH=163;; (*ITAG) Solyc04g081890.1.1 (e_value=2e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63347131-63347535 transcript_region:SL2.40ch04:63347131..63347535+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00030487g0006.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|255550075|ref|XP_002516088.1| (e_value=3e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g062840.1.1 (e_value=1e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:49385961-49386674 transcript_region:SL2.40ch08:49385961..49386674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030487g0002.1 protein AED:0.16 eAED:0.16 QI:303|0.5|0.66|1|0|0|3|1681|378; (*ITAG) Solyc11g044510.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:35859363-35860448 transcript_region:SL2.40ch11:35859363..35860448+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030487g0001.1 protein AED:0.26 eAED:0.26 QI:330|0.85|0.87|1|0.85|0.75|8|0|498; (*GB) gi|225429504|ref|XP_002278508.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250890 [Vitis vinifera];; (*TAIR) AT4G33050.3 (e_value=8e-179) | Symbols: EDA39 | calmodulin-binding family protein | chr4:15944604-15946736 REVERSE LENGTH=488;; (*ITAG) Solyc12g008960.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2266946-2269413 transcript_region:SL2.40ch12:2266946..2269413+ functional_description:"Calmodulin-binding protein (AHRD V1 ***- A2I5F3_BETVU)"; NbS00028950g0008.1 protein AED:0.10 eAED:0.10 QI:89|1|0.8|1|1|1|5|0|452; (*GB) gi|255537952|ref|XP_002510041.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q28HE5|S38A6_XENTR (e_value=6e-26) Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1;; (*TAIR) AT3G30390.2 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460;; (*ITAG) Solyc04g077460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59962577-59967364 transcript_region:SL2.40ch04:59962577..59967364+ go_terms:GO:0015186 functional_description:"Amino acid transporter (AHRD V1 **** B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015186 NbS00028950g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|1|1|4|221|159; (*GB) gi|225458920|ref|XP_002285490.1| (e_value=1e-49) PREDICTED: uncharacterized protein LOC100259164 [Vitis vinifera];; (*TAIR) AT3G12210.2 (e_value=9e-42) | Symbols: | DNA binding | chr3:3894843-3895879 FORWARD LENGTH=209;; (*ITAG) Solyc04g077450.2.1 (e_value=8e-77) genomic_reference:SL2.40ch04 gene_region:59958591-59961594 transcript_region:SL2.40ch04:59958591..59961594+ functional_description:"AGAP001695-PA (Fragment) (AHRD V1 ***- Q380L4_ANOGA)"; NbS00037636g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|124; (*ITAG) Solyc02g090600.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:46728742-46729266 transcript_region:SL2.40ch02:46728742..46729266- functional_description:"Unknown Protein (AHRD V1)"; NbS00037636g0001.1 protein AED:0.20 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|79 NbS00002590g0012.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|1|0.66|3|0|510; (*GB) gi|225451367|ref|XP_002263590.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Vitis vinifera];; (*SWP) sp|O04491|PPR26_ARATH (e_value=4e-168) Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1;; (*TAIR) AT1G09680.1 (e_value=3e-169) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3134107-3135930 REVERSE LENGTH=607;; (*ITAG) Solyc11g011410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4479440-4480882 transcript_region:SL2.40ch11:4479440..4480882+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJT0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00002590g0014.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|0|0.5|2|0|173; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-14) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=1e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00002590g0013.1 protein AED:0.26 eAED:0.32 QI:0|0.4|0.5|0.83|1|1|6|322|155; (*GB) gi|255583555|ref|XP_002532534.1| (e_value=8e-19) kinesin light chain, putative [Ricinus communis];; (*TAIR) AT5G37590.1 (e_value=3e-14) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:14927403-14932709 REVERSE LENGTH=551;; (*ITAG) Solyc11g011390.1.1 (e_value=6e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4461423-4472090 transcript_region:SL2.40ch11:4461423..4472090+ go_terms:GO:0005488 functional_description:"TPR repeat Kinesin light chain Kinesin light chain (AHRD V1 *--- Q4C9Q1_CROWT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021972g0003.1 protein AED:0.15 eAED:0.15 QI:122|1|0.85|1|0.83|0.85|7|27|572; (*GB) gi|293331315|ref|NP_001169161.1| (e_value=6e-173) uncharacterized protein LOC100383011 precursor [Zea mays];; (*SWP) sp|Q5RCM7|DJC16_PONAB (e_value=3e-21) DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1;; (*TAIR) AT3G08970.1 (e_value=6e-151) | Symbols: ATERDJ3A, TMS1 | DNAJ heat shock N-terminal domain-containing protein | chr3:2737589-2740265 FORWARD LENGTH=572;; (*ITAG) Solyc09g005120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:70252-75607 transcript_region:SL2.40ch09:70252..75607- go_terms:GO:0016491 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- C7DHA9_9EURY); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0016491 NbS00020582g0004.1 protein AED:0.17 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|572; (*GB) gi|147798057|emb|CAN60703.1| (e_value=0.0) hypothetical protein VITISV_003522 [Vitis vinifera];; (*SWP) sp|Q55BF2|NMD3_DICDI (e_value=9e-148) 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1;; (*TAIR) AT2G03820.1 (e_value=0.0) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc06g053800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33148340-33149857 transcript_region:SL2.40ch06:33148340..33149857- go_terms:GO:0005515,GO:0043023 functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; GO:0005515,GO:0043023 NbS00020582g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|357495641|ref|XP_003618109.1| (e_value=5e-17) Niemann-Pick C1 protein [Medicago truncatula];; (*TAIR) AT1G42470.1 (e_value=1e-11) | Symbols: | Patched family protein | chr1:15926987-15935128 FORWARD LENGTH=1272;; (*ITAG) Solyc04g082490.2.1 (e_value=2e-18) genomic_reference:SL2.40ch04 gene_region:63718268-63734726 transcript_region:SL2.40ch04:63718268..63734726- go_terms:GO:0005515 functional_description:"Niemann-Pick C1 protein (AHRD V1 **-- C5FQM2_NANOT); contains Interpro domain(s) IPR004765 Niemann-Pick C type protein "; GO:0005515 NbS00020582g0015.1 protein AED:0.36 eAED:0.36 QI:193|1|0.83|1|0.8|1|6|0|453; (*GB) gi|356538313|ref|XP_003537648.1| (e_value=0.0) PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like [Glycine max];; (*SWP) sp|Q8R1R3|STAR7_MOUSE (e_value=5e-13) StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2;; (*TAIR) AT4G14500.1 (e_value=0.0) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:8334391-8337022 FORWARD LENGTH=433;; (*ITAG) Solyc06g053790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33139221-33147721 transcript_region:SL2.40ch06:33139221..33147721+ functional_description:"Membrane related protein-like (AHRD V1 **-- Q9LS84_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00007737g0009.1 protein AED:0.15 eAED:0.15 QI:16|0.8|1|1|0.8|0.83|6|207|255; (*GB) gi|255581732|ref|XP_002531668.1| (e_value=2e-122) Serine/threonine-protein kinase SAPK1, putative [Ricinus communis];; (*SWP) sp|Q75LR7|SAPK1_ORYSJ (e_value=2e-107) Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1;; (*TAIR) AT1G78290.3 (e_value=3e-97) | Symbols: | Protein kinase superfamily protein | chr1:29457457-29458909 REVERSE LENGTH=343;; (*ITAG) Solyc04g074500.2.1 (e_value=2e-117) genomic_reference:SL2.40ch04 gene_region:58086749-58090596 transcript_region:SL2.40ch04:58086749..58090596- go_terms:GO:0004679 functional_description:"Serine-threonine protein kinase (AHRD V1 **** Q09VQ1_WHEAT); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00007737g0010.1 protein AED:0.06 eAED:0.06 QI:150|1|1|1|1|1|4|281|255; (*GB) gi|15778152|dbj|BAB68526.1| (e_value=0.0) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|O49995|1433B_TOBAC (e_value=0.0) 14-3-3-like protein B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=5e-163) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc12g057110.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:48549454-48552229 transcript_region:SL2.40ch12:48549454..48552229+ go_terms:GO:0050815 functional_description:"14-3-3 (Fragment) (AHRD V1 ***- D3TIB7_MANIN); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00046473g0014.1 protein AED:0.23 eAED:0.27 QI:45|0.54|0.5|0.91|0.63|0.66|12|0|850; (*GB) gi|359473388|ref|XP_002268718.2| (e_value=0.0) PREDICTED: HIPL1 protein-like [Vitis vinifera];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=0.0) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=0.0) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc03g113490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57669071-57672798 transcript_region:SL2.40ch03:57669071..57672798+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00046473g0016.1 protein AED:0.10 eAED:0.13 QI:103|0.33|0.25|1|0.33|0.5|4|0|441; (*GB) gi|259479222|dbj|BAI40146.1| (e_value=1e-94) glutathione S-transferase 1 [Diospyros kaki];; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=2e-85) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=1e-86) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g006750.2.1 (e_value=2e-117) genomic_reference:SL2.40ch05 gene_region:1381588-1382811 transcript_region:SL2.40ch05:1381588..1382811+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase 1 (AHRD V1 **** C8KH57_DIOKA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00046473g0015.1 protein AED:0.94 eAED:0.94 QI:0|0|0.33|0.33|1|1|3|41|348; (*GB) gi|359473390|ref|XP_002268680.2| (e_value=7e-166) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=1e-131) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=8e-133) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc01g108410.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054511g0004.1 protein AED:0.02 eAED:0.02 QI:257|1|0.85|1|0.66|0.57|7|199|1169; (*GB) gi|224092306|ref|XP_002309551.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYD9|EMF1_ARATH (e_value=2e-11) Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana GN=EMF1 PE=1 SV=1;; (*TAIR) AT5G11530.1 (e_value=1e-12) | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:3697140-3700930 FORWARD LENGTH=1096;; (*ITAG) Solyc11g071250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51865253-51870977 transcript_region:SL2.40ch11:51865253..51870977- functional_description:"EMBYO FLOWERING 1-like protein (Fragment) (AHRD V1 *-*- Q52ZP2_PEA)"; NbS00023881g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|4|0|465; (*GB) gi|225461632|ref|XP_002285388.1| (e_value=5e-90) PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LKA5|UMP1_ARATH (e_value=6e-86) Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1;; (*TAIR) AT3G15000.1 (e_value=5e-87) | Symbols: | cobalt ion binding | chr3:5050321-5052121 FORWARD LENGTH=395;; (*ITAG) Solyc10g007180.2.1 (e_value=1e-110) genomic_reference:SL2.40ch10 gene_region:1623464-1627207 transcript_region:SL2.40ch10:1623464..1627207- functional_description:"DAG protein (AHRD V1 *--- B6TDH1_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; NbS00023881g0006.1 protein AED:0.23 eAED:0.23 QI:91|0.8|0.83|1|0.6|0.66|6|256|420; (*GB) gi|302142914|emb|CBI20209.3| (e_value=9e-60) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G53250.1 (e_value=3e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53800.1); Has 11909 Blast hits to 7704 proteins in 757 species: Archae - 51; Bacteria - 1338; Metazoa - 4550; Fungi - 987; Plants - 464; Viruses - 24; Other Eukaryotes - 4495 (source: NCBI BLink). | chr1:19857468-19859156 FORWARD LENGTH=371;; (*ITAG) Solyc12g014220.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5057440-5062294 transcript_region:SL2.40ch12:5057440..5062294+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *--- Q01G44_OSTTA)"; NbS00032851g0006.1 protein AED:0.58 eAED:0.58 QI:61|0|0|0.5|1|0.5|2|0|39 NbS00032851g0005.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|1|1|2|0|266; (*GB) gi|356528487|ref|XP_003532834.1| (e_value=9e-39) PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein-like [Glycine max];; (*SWP) sp|Q9LX16|EIL4_ARATH (e_value=5e-36) Putative ETHYLENE INSENSITIVE 3-like 4 protein OS=Arabidopsis thaliana GN=EIL4 PE=2 SV=1;; (*TAIR) AT5G10120.1 (e_value=4e-37) | Symbols: | Ethylene insensitive 3 family protein | chr5:3169732-3171147 FORWARD LENGTH=471;; (*ITAG) Solyc03g096630.1.1 (e_value=5e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:52293811-52295115 transcript_region:SL2.40ch03:52293811..52295115+ go_terms:GO:0005634 functional_description:"Ethylene insensitive-like protein (AHRD V1 ***- D3YBE3_TRIRP); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005634 NbS00031532g0004.1 protein AED:0.17 eAED:0.18 QI:0|0.6|0.45|1|0.8|0.63|11|0|968; (*GB) gi|6671365|gb|AAF23176.1|AF216497_1 (e_value=0.0) P-glycoprotein [Gossypium hirsutum];; (*SWP) sp|Q9SGY1|AB10B_ARATH (e_value=0.0) ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2;; (*TAIR) AT1G10680.1 (e_value=0.0) | Symbols: PGP10 | P-glycoprotein 10 | chr1:3538470-3543782 REVERSE LENGTH=1227;; (*ITAG) Solyc08g076720.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57827103-57836786 transcript_region:SL2.40ch08:57827103..57836786- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein TM_0288 (AHRD V1 *--* Y288_THEMA); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00036847g0004.1 protein AED:0.03 eAED:0.03 QI:122|1|1|1|0.5|0.8|5|548|378; (*GB) gi|225440538|ref|XP_002275792.1| (e_value=8e-52) PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera];; (*TAIR) AT3G54000.1 (e_value=6e-14) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996757-19998197 FORWARD LENGTH=352;; (*ITAG) Solyc10g084970.1.1 (e_value=3e-128) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63649834-63651609 transcript_region:SL2.40ch10:63649834..63651609+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056823g0003.1 protein AED:0.28 eAED:0.28 QI:123|1|0.75|1|1|1|4|0|202; (*GB) gi|170773910|gb|ACB32231.1| (e_value=3e-102) nascent polypeptide associated complex alpha [Solanum chacoense];; (*SWP) sp|Q9M612|NACA_PINTA (e_value=3e-78) Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G12390.1 (e_value=2e-70) | Symbols: | Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203;; (*ITAG) Solyc10g081030.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61534917-61538284 transcript_region:SL2.40ch10:61534917..61538284+ go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6T903_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00015060g0107.1 protein AED:0.25 eAED:0.25 QI:261|0.57|0.75|0.87|0.71|0.87|8|0|313 NbS00010154g0005.1 protein AED:0.08 eAED:0.09 QI:0|0|0.5|1|0|0|2|119|347; (*GB) gi|224111784|ref|XP_002315977.1| (e_value=7e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT3G25590.1 (e_value=5e-30) | Symbols: | unknown protein; Has 149 Blast hits to 140 proteins in 44 species: Archae - 0; Bacteria - 6; Metazoa - 40; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:9302271-9303542 FORWARD LENGTH=423;; (*ITAG) Solyc04g005920.1.1 (e_value=7e-111) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:603486-604355 transcript_region:SL2.40ch04:603486..604355+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010154g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|147860138|emb|CAN82924.1| (e_value=2e-14) hypothetical protein VITISV_039590 [Vitis vinifera];; (*ITAG) Solyc05g010170.1.1 (e_value=7e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4359591-4360127 transcript_region:SL2.40ch05:4359591..4360127- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C1HCS6_PARBA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00022950g0008.1 protein AED:0.36 eAED:0.37 QI:0|0.9|0.72|1|1|1|11|0|407; (*GB) gi|269115811|gb|ACZ26470.1| (e_value=0.0) alpha-amylase [Solanum tuberosum];; (*SWP) sp|P17859|AMYA_VIGMU (e_value=6e-127) Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1;; (*TAIR) AT1G76130.1 (e_value=0.0) | Symbols: ATAMY2, AMY2 | alpha-amylase-like 2 | chr1:28561647-28563914 FORWARD LENGTH=413;; (*ITAG) Solyc04g082090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63474186-63478355 transcript_region:SL2.40ch04:63474186..63478355+ go_terms:GO:0005975 functional_description:"Alpha-amylase (AHRD V1 ***- D1MEA8_SOLTU); contains Interpro domain(s) IPR013775 Alpha-amylase, plant "; GO:0005975 NbS00014648g0002.1 protein AED:0.59 eAED:0.62 QI:0|0.33|0|0.75|1|1|4|0|119; (*GB) gi|356567206|ref|XP_003551812.1| (e_value=5e-56) PREDICTED: sphingosine-1-phosphate lyase-like [Glycine max];; (*SWP) sp|Q52RG7|SGPL_ORYSJ (e_value=4e-55) Sphingosine-1-phosphate lyase OS=Oryza sativa subsp. japonica GN=SPL PE=2 SV=2;; (*TAIR) AT1G27980.1 (e_value=2e-54) | Symbols: DPL1, ATDPL1 | dihydrosphingosine phosphate lyase | chr1:9748812-9752618 FORWARD LENGTH=544;; (*ITAG) Solyc05g015860.2.1 (e_value=5e-65) genomic_reference:SL2.40ch05 gene_region:12526930-12533509 transcript_region:SL2.40ch05:12526930..12533509+ go_terms:GO:0008117 functional_description:"Sphingosine-1-phosphate lyase (AHRD V1 **-* Q549V9_ARATH); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0008117 NbS00014648g0101.1 protein AED:0.24 eAED:0.45 QI:0|0|0.5|1|0|0.5|2|464|149 NbS00000649g0008.1 protein AED:0.04 eAED:0.04 QI:11|0.8|0.83|1|0.6|0.33|6|181|177; (*GB) gi|242095944|ref|XP_002438462.1| (e_value=5e-100) hypothetical protein SORBIDRAFT_10g020030 [Sorghum bicolor];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=6e-100) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=4e-101) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc07g066080.2.1 (e_value=7e-104) genomic_reference:SL2.40ch07 gene_region:64830179-64832100 transcript_region:SL2.40ch07:64830179..64832100+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00021379g0005.1 protein AED:0.17 eAED:0.29 QI:269|0.5|0.33|1|0|0|3|0|63; (*ITAG) Solyc12g008860.1.1 (e_value=7e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2195406-2198052 transcript_region:SL2.40ch12:2195406..2198052- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007915 Uncharacterised protein family UPF0197 "; NbS00021379g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|543; (*GB) gi|225444916|ref|XP_002279603.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 5-like [Vitis vinifera];; (*SWP) sp|Q9SU79|PAO5_ARATH (e_value=0.0) Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1;; (*TAIR) AT4G29720.1 (e_value=0.0) | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533;; (*ITAG) Solyc05g018880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:24474233-24475771 transcript_region:SL2.40ch05:24474233..24475771- go_terms:GO:0046592 functional_description:"Polyamine oxidase (AHRD V1 **** A1CAV3_ASPCL); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592 NbS00021379g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.92|0.86|1|0.92|0.93|15|601|552; (*GB) gi|3299896|gb|AAC25984.1| (e_value=0.0) beta-galactosidase [Solanum lycopersicum];; (*SWP) sp|P48981|BGAL_MALDO (e_value=0.0) Beta-galactosidase OS=Malus domestica PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00003340g0007.1 protein AED:0.19 eAED:0.27 QI:0|0.62|0.66|1|0.75|0.77|9|317|374; (*GB) gi|225425821|ref|XP_002264828.1| (e_value=1e-157) PREDICTED: proteasome subunit beta type-5 [Vitis vinifera];; (*SWP) sp|O24361|PSB5_SPIOL (e_value=1e-153) Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G26340.1 (e_value=3e-152) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:9650600-9652572 REVERSE LENGTH=273;; (*ITAG) Solyc05g056160.2.1 (e_value=4e-178) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00031957g0003.1 protein AED:0.07 eAED:0.07 QI:108|0.5|0.8|1|0.75|0.8|5|356|407; (*GB) gi|255575665|ref|XP_002528732.1| (e_value=2e-161) catalytic, putative [Ricinus communis];; (*TAIR) AT2G36290.1 (e_value=2e-141) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc09g009510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2924885-2929510 transcript_region:SL2.40ch09:2924885..2929510- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00055496g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|116 NbS00055496g0004.1 protein AED:0.31 eAED:0.32 QI:6|0|0|1|1|1|2|0|135; (*ITAG) Solyc11g017110.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7906484-7906906 transcript_region:SL2.40ch11:7906484..7906906+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001428g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|1|0.5|0.66|3|0|986; (*GB) gi|113205208|gb|AAT39951.2| (e_value=0.0) Disease resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-117) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=1e-53) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001428g0008.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.33|1|0|0.33|3|76|257; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=6e-90) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-33) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc05g013280.2.1 (e_value=7e-93) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001428g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|427; (*GB) gi|113205188|gb|AAT39933.2| (e_value=4e-42) Disease resistance protein, putative [Solanum demissum];; (*ITAG) Solyc05g007170.2.1 (e_value=9e-40) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00012947g0001.1 protein AED:0.21 eAED:0.21 QI:205|0|0.5|1|0|0.5|2|295|242; (*GB) gi|75291821|sp|Q6R567.1|RMA1_CAPAN (e_value=5e-79) RecName: Full=E3 ubiquitin-protein ligase RMA1H1; AltName: Full=Protein RING membrane-anchor 1 homolog 1;; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=1e-80) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G03510.2 (e_value=1e-36) | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | chr4:1557905-1558654 REVERSE LENGTH=249;; (*ITAG) Solyc07g054080.1.1 (e_value=3e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59811811-59812539 transcript_region:SL2.40ch07:59811811..59812539+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6TI40_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00012947g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|171 NbS00028440g0001.1 protein AED:0.08 eAED:0.08 QI:2066|1|1|1|0.6|0.16|6|308|130; (*GB) gi|356523801|ref|XP_003530523.1| (e_value=3e-47) PREDICTED: vacuolar protein sorting-associated protein 32 homolog 1-like [Glycine max];; (*SWP) sp|Q9SZE4|VP322_ARATH (e_value=2e-42) Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=1 SV=1;; (*TAIR) AT4G29160.2 (e_value=4e-44) | Symbols: SNF7.1 | SNF7 family protein | chr4:14381350-14382342 FORWARD LENGTH=192;; (*ITAG) Solyc05g026050.2.1 (e_value=1e-50) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00021035g0007.1 protein AED:0.09 eAED:0.09 QI:150|1|1|1|1|1|3|252|281; (*GB) gi|6552389|dbj|BAA88224.1| (e_value=0.0) myb-related transcription factor LBM4 [Nicotiana tabacum];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=3e-80) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=3e-90) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc09g090130.2.1 (e_value=1e-151) genomic_reference:SL2.40ch09 gene_region:65023341-65025440 transcript_region:SL2.40ch09:65023341..65025440+ go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **** A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00021035g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=5e-16) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc05g021350.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00012544g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|225462703|ref|XP_002267400.1| (e_value=1e-84) PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=1e-50) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=8e-52) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc03g007460.1.1 (e_value=3e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2014935-2016125 transcript_region:SL2.40ch03:2014935..2016125- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_TOBAC); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00058389g0001.1 protein AED:0.00 eAED:0.00 QI:651|1|1|1|0.5|0.33|3|8|138; (*GB) gi|169264928|dbj|BAG12304.1| (e_value=5e-18) 6b-interacting protein 2 [Nicotiana tabacum]; NbS00000653g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.66|1|1|1|6|575|515; (*GB) gi|2654423|gb|AAB87727.1| (e_value=0.0) hydroxy-methylglutaryl-coenzyme A reductase [Nicotiana tabacum];; (*SWP) sp|P48020|HMDH1_SOLTU (e_value=0.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum GN=HMG1 PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=0.0) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40528275-40531424 transcript_region:SL2.40ch02:40528275..40531424- go_terms:GO:0042282 functional_description:"Hydroxy-methylglutaryl-coenzyme A reductase (AHRD V1 **** O48624_TOBAC); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00057309g0005.1 protein AED:0.20 eAED:0.21 QI:171|1|0.5|1|1|1|2|0|488; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=1e-164) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=5e-76) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=4e-77) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc06g069760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39832926-39835533 transcript_region:SL2.40ch06:39832926..39835533- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00027151g0017.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|0.66|0.75|4|139|313; (*GB) gi|356529761|ref|XP_003533456.1| (e_value=0.0) PREDICTED: isoflavone reductase homolog [Glycine max];; (*SWP) sp|P52581|IFRH_LUPAL (e_value=0.0) Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1;; (*TAIR) AT1G32100.1 (e_value=2e-162) | Symbols: ATPRR1, PRR1 | pinoresinol reductase 1 | chr1:11546472-11547953 REVERSE LENGTH=317;; (*ITAG) Solyc06g066170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37873239-37877673 transcript_region:SL2.40ch06:37873239..37877673+ go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** A3R052_LINPE); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00027151g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.75|1|0.85|0.87|8|0|486; (*GB) gi|359475982|ref|XP_002280120.2| (e_value=0.0) PREDICTED: endoglucanase 16-like [Vitis vinifera];; (*SWP) sp|Q8VYG3|GUN16_ARATH (e_value=0.0) Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=0.0) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00027151g0011.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|296081731|emb|CBI20736.3| (e_value=3e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G72510.2 (e_value=3e-39) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc06g066110.1.1 (e_value=3e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37833619-37834071 transcript_region:SL2.40ch06:37833619..37834071+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00027151g0004.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|369; (*GB) gi|195542260|gb|AAR87850.2| (e_value=7e-110) fertilization-related kinase 1 [Solanum chacoense];; (*SWP) sp|P27636|CDC15_YEAST (e_value=2e-32) Cell division control protein 15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC15 PE=1 SV=3;; (*TAIR) AT5G67080.1 (e_value=3e-65) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065790.1.1 (e_value=3e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027151g0018.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|6|0|283; (*GB) gi|109289907|gb|AAP45171.2| (e_value=4e-94) Calcium-dependent protein kinase substrate protein, putative [Solanum bulbocastanum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=9e-38) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G45580.1 (e_value=2e-65) | Symbols: | Homeodomain-like superfamily protein | chr5:18481092-18482598 REVERSE LENGTH=264;; (*ITAG) Solyc08g076010.2.1 (e_value=4e-122) genomic_reference:SL2.40ch08 gene_region:57233049-57236893 transcript_region:SL2.40ch08:57233049..57236893- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 *--* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00030545g0002.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|550; (*GB) gi|147853521|emb|CAN78533.1| (e_value=0.0) hypothetical protein VITISV_006310 [Vitis vinifera];; (*SWP) sp|Q55GA4|CDC45_DICDI (e_value=3e-58) Cell division control protein 45 homolog OS=Dictyostelium discoideum GN=cdc45 PE=3 SV=1;; (*TAIR) AT3G25100.1 (e_value=0.0) | Symbols: CDC45 | cell division cycle 45 | chr3:9144292-9146082 FORWARD LENGTH=596;; (*ITAG) Solyc09g059440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:50032854-50034641 transcript_region:SL2.40ch09:50032854..50034641+ go_terms:GO:0005515 functional_description:"CDC45 (Cell division cycle 45)-like protein (AHRD V1 ***- Q9LSG6_ARATH); contains Interpro domain(s) IPR003874 CDC45-like protein "; GO:0005515 NbS00030545g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.5|1|1|1|4|299|340; (*GB) gi|147788436|emb|CAN63304.1| (e_value=5e-64) hypothetical protein VITISV_002333 [Vitis vinifera];; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=8e-14) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1;; (*TAIR) AT3G25070.1 (e_value=6e-15) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc09g059430.2.1 (e_value=3e-107) genomic_reference:SL2.40ch09 gene_region:50028174-50031148 transcript_region:SL2.40ch09:50028174..50031148+ go_terms:GO:0005515 functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X9_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; GO:0005515 NbS00030545g0006.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|296086321|emb|CBI31762.3| (e_value=1e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G25100.1 (e_value=9e-43) | Symbols: CDC45 | cell division cycle 45 | chr3:9144292-9146082 FORWARD LENGTH=596;; (*ITAG) Solyc09g059440.1.1 (e_value=5e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:50032854-50034641 transcript_region:SL2.40ch09:50032854..50034641+ go_terms:GO:0005515 functional_description:"CDC45 (Cell division cycle 45)-like protein (AHRD V1 ***- Q9LSG6_ARATH); contains Interpro domain(s) IPR003874 CDC45-like protein "; GO:0005515 NbS00043188g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|225431591|ref|XP_002282621.1| (e_value=6e-81) PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q6AYB3|ISY1_RAT (e_value=1e-41) Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus GN=Isy1 PE=2 SV=1;; (*TAIR) AT3G18790.1 (e_value=5e-78) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink). | chr3:6477853-6478755 FORWARD LENGTH=300;; (*ITAG) Solyc05g051070.2.1 (e_value=7e-83) genomic_reference:SL2.40ch05 gene_region:60422107-60429626 transcript_region:SL2.40ch05:60422107..60429626- functional_description:"Pre-mRNA-splicing factor ISY1 (AHRD V1 ***- B6T8I4_MAIZE); contains Interpro domain(s) IPR009360 Isy1-like splicing "; NbC25840944g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|356555714|ref|XP_003546175.1| (e_value=1e-66) PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=2e-36) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=1e-48) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc04g014680.2.1 (e_value=1e-99) genomic_reference:SL2.40ch04 gene_region:4937457-4942883 transcript_region:SL2.40ch04:4937457..4942883- go_terms:GO:0004221 functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-* B6TDL6_MAIZE)"; GO:0004221 NbS00039650g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|1|8|692|473; (*GB) gi|225431255|ref|XP_002267958.1| (e_value=0.0) PREDICTED: 3-epi-6-deoxocathasterone 23-monooxygenase [Vitis vinifera];; (*SWP) sp|Q9M066|C90C1_ARATH (e_value=0.0) 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3;; (*TAIR) AT4G36380.1 (e_value=0.0) | Symbols: ROT3 | Cytochrome P450 superfamily protein | chr4:17187973-17192202 REVERSE LENGTH=524;; (*ITAG) Solyc02g084740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42420436-42426374 transcript_region:SL2.40ch02:42420436..42426374- go_terms:GO:0016709 functional_description:"Cytochrome P450"; GO:0016709 NbS00039650g0009.1 protein AED:0.06 eAED:0.06 QI:242|1|1|1|1|1|2|925|373; (*GB) gi|147794654|emb|CAN73506.1| (e_value=3e-147) hypothetical protein VITISV_007907 [Vitis vinifera];; (*SWP) sp|Q09522|DIM1_CAEEL (e_value=1e-71) Probable dimethyladenosine transferase OS=Caenorhabditis elegans GN=E02H1.1 PE=2 SV=2;; (*TAIR) AT5G66360.2 (e_value=3e-129) | Symbols: | Ribosomal RNA adenine dimethylase family protein | chr5:26510329-26511711 FORWARD LENGTH=380;; (*ITAG) Solyc02g084730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42417193-42418872 transcript_region:SL2.40ch02:42417193..42418872+ go_terms:GO:0000179 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 *-*- C2HM18_LACAC); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000179 NbS00014585g0005.1 protein AED:0.00 eAED:0.00 QI:85|1|0.83|1|0.6|0.66|6|21|288; (*GB) gi|20138099|sp|O24296.1|GPX1_PEA (e_value=4e-15) RecName: Full=Phospholipid hydroperoxide glutathione peroxidase, chloroplastic; Short=PHGPx; Flags: Precursor;; (*SWP) sp|O24296|GPX1_PEA (e_value=1e-16) Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G25080.1 (e_value=3e-13) | Symbols: ATGPX1, GPX1 | glutathione peroxidase 1 | chr2:10668134-10669828 FORWARD LENGTH=236;; (*ITAG) Solyc08g006710.2.1 (e_value=1e-33) genomic_reference:SL2.40ch08 gene_region:1269615-1270723 transcript_region:SL2.40ch08:1269615..1270723- functional_description:"Unknown Protein (AHRD V1)"; NbS00014585g0006.1 protein AED:0.22 eAED:0.22 QI:144|1|1|1|1|0.66|6|265|234; (*GB) gi|284433780|gb|ADB85096.1| (e_value=5e-119) putative glutathione peroxidase [Jatropha curcas];; (*SWP) sp|O24296|GPX1_PEA (e_value=2e-108) Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G25080.1 (e_value=4e-108) | Symbols: ATGPX1, GPX1 | glutathione peroxidase 1 | chr2:10668134-10669828 FORWARD LENGTH=236;; (*ITAG) Solyc08g006720.2.1 (e_value=2e-137) genomic_reference:SL2.40ch08 gene_region:1274923-1279455 transcript_region:SL2.40ch08:1274923..1279455- go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- D6BR59_9ROSI); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00057436g0009.1 protein AED:0.31 eAED:0.66 QI:0|0.5|0|1|1|1|3|0|369; (*GB) gi|297736134|emb|CBI24172.3| (e_value=2e-103) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G79570.1 (e_value=8e-84) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:29932856-29937540 REVERSE LENGTH=1248;; (*ITAG) Solyc02g031910.2.1 (e_value=4e-79) genomic_reference:SL2.40ch02 gene_region:17857085-17865021 transcript_region:SL2.40ch02:17857085..17865021- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00057436g0002.1 protein AED:0.07 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|542; (*GB) gi|255544600|ref|XP_002513361.1| (e_value=0.0) DELLA protein GAI1, putative [Ricinus communis];; (*SWP) sp|Q8S4W7|GAI1_VITVI (e_value=5e-72) DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1;; (*TAIR) AT1G66350.1 (e_value=2e-73) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc03g110950.1.1 (e_value=4e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55727909-55729501 transcript_region:SL2.40ch03:55727909..55729501+ go_terms:GO:0005515,GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IF61_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbS00023304g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.14|0|1|0.14|0|8|0|1679; (*GB) gi|53793725|gb|AAU93588.1| (e_value=0.0) late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT5G48620.1 (e_value=4e-44) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc05g007350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00023304g0011.1 protein AED:0.14 eAED:0.14 QI:75|1|1|1|0.81|0.83|12|6|594; (*GB) gi|225426379|ref|XP_002271860.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform 2 [Vitis vinifera];; (*SWP) sp|C0LGH8|Y1634_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1;; (*TAIR) AT1G63430.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:23522896-23526451 FORWARD LENGTH=664;; (*ITAG) Solyc08g080830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61177982-61182919 transcript_region:SL2.40ch08:61177982..61182919- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018182g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|68 NbS00017169g0007.1 protein AED:0.08 eAED:0.08 QI:125|1|1|1|0|0|2|91|152; (*GB) gi|225431760|ref|XP_002270507.1| (e_value=4e-25) PREDICTED: uncharacterized protein LOC100261891 [Vitis vinifera];; (*TAIR) AT5G49120.1 (e_value=4e-19) | Symbols: | Protein of unknown function (DUF581) | chr5:19908800-19909332 REVERSE LENGTH=150;; (*ITAG) Solyc01g066570.2.1 (e_value=2e-36) genomic_reference:SL2.40ch01 gene_region:67036797-67037827 transcript_region:SL2.40ch01:67036797..67037827+ functional_description:"Genomic DNA chromosome 5 TAC clone K14A3 (AHRD V1 *--- Q9FGQ9_ARATH); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00048860g0007.1 protein AED:0.05 eAED:0.08 QI:0|0.33|0|1|0.33|0.25|4|0|371; (*GB) gi|225447184|ref|XP_002271851.1| (e_value=5e-156) PREDICTED: GDSL esterase/lipase At2g04570-like [Vitis vinifera];; (*SWP) sp|Q9SJB4|GDL34_ARATH (e_value=2e-144) GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1;; (*TAIR) AT2G04570.1 (e_value=1e-145) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350;; (*ITAG) Solyc07g049430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57019991-57022552 transcript_region:SL2.40ch07:57019991..57022552+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g42990 (AHRD V1 ***- GDL48_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00048860g0001.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|318; (*GB) gi|113205445|gb|AAW28576.2| (e_value=9e-26) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=3e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00020621g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.91|1|0.81|0.91|12|315|463; (*GB) gi|255542054|ref|XP_002512091.1| (e_value=0.0) Triose phosphate/phosphate translocator, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|P49132|TPT_FLATR (e_value=1e-175) Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1;; (*TAIR) AT5G46110.1 (e_value=3e-172) | Symbols: APE2, TPT | Glucose-6-phosphate/phosphate translocator-related | chr5:18697606-18700212 FORWARD LENGTH=410;; (*ITAG) Solyc01g010350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5153980-5158097 transcript_region:SL2.40ch01:5153980..5158097- go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator (AHRD V1 **** Q7XY15_WHEAT); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00009427g0003.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|224140485|ref|XP_002323613.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN63|BZR2_ARATH (e_value=2e-18) Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis thaliana GN=BZR2 PE=1 SV=1;; (*TAIR) AT1G19350.6 (e_value=2e-19) | Symbols: BES1, BZR2 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:6688841-6690165 FORWARD LENGTH=335;; (*ITAG) Solyc10g076390.1.1 (e_value=1e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58688296-58689320 transcript_region:SL2.40ch10:58688296..58689320+ functional_description:"BES1/BZR1 homolog protein 1 (AHRD V1 *--- BEH1_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; NbS00009427g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|82; (*ITAG) Solyc02g065780.1.1 (e_value=3e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:31501367-31501657 transcript_region:SL2.40ch02:31501367..31501657- functional_description:"Unknown Protein (AHRD V1)"; NbS00034108g0005.1 protein AED:0.09 eAED:0.09 QI:724|0.6|0.83|1|0.8|0.83|6|252|139; (*GB) gi|224058445|ref|XP_002299513.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28140.1 (e_value=3e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9833029-9834390 REVERSE LENGTH=280;; (*ITAG) Solyc05g012700.2.1 (e_value=3e-70) genomic_reference:SL2.40ch05 gene_region:5890494-5893749 transcript_region:SL2.40ch05:5890494..5893749- functional_description:"Conserved hypothetical membrane protein (AHRD V1 ***- B1XKY4_SYNP2); contains Interpro domain(s) IPR019275 Protein of unknown function DUF2301, transmembrane "; NbS00023631g0008.1 protein AED:0.18 eAED:0.18 QI:240|1|0.83|1|1|1|6|0|572; (*GB) gi|359483794|ref|XP_002264038.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244557 [Vitis vinifera];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=0.0) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=0.0) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc02g071780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35706526-35712769 transcript_region:SL2.40ch02:35706526..35712769- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00023631g0010.1 protein AED:0.29 eAED:0.29 QI:192|0.62|0.70|1|0.18|0.29|17|1086|344; (*GB) gi|297740562|emb|CBI30744.3| (e_value=7e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGN2|Y3148_ARATH (e_value=4e-39) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1;; (*TAIR) AT3G14840.2 (e_value=3e-40) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr3:4988271-4993891 FORWARD LENGTH=1020;; (*ITAG) Solyc02g071810.2.1 (e_value=4e-128) genomic_reference:SL2.40ch02 gene_region:35737283-35746207 transcript_region:SL2.40ch02:35737283..35746207- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00023631g0011.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0.5|2|0|129; (*GB) gi|147781733|emb|CAN61169.1| (e_value=6e-16) hypothetical protein VITISV_010446 [Vitis vinifera];; (*TAIR) AT1G07650.2 (e_value=3e-13) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1020;; (*ITAG) Solyc02g071810.2.1 (e_value=3e-36) genomic_reference:SL2.40ch02 gene_region:35737283-35746207 transcript_region:SL2.40ch02:35737283..35746207- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00056694g0008.1 protein AED:0.29 eAED:0.29 QI:163|1|0.85|1|0.33|0.42|7|363|287; (*GB) gi|77403669|dbj|BAE46413.1| (e_value=5e-149) MYB-CC type transfactor [Solanum tuberosum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-29) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT2G01060.1 (e_value=3e-91) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286;; (*ITAG) Solyc11g022470.1.1 (e_value=2e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14018635-14021154 transcript_region:SL2.40ch11:14018635..14021154+ go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 **-- Q3LHL3_SOLTU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00050083g0001.1 protein AED:0.19 eAED:0.22 QI:0|0.90|0.86|1|1|1|22|402|627; (*GB) gi|225452298|ref|XP_002272341.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264636 [Vitis vinifera];; (*TAIR) AT1G67850.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404;; (*ITAG) Solyc02g093470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48907262-48911703 transcript_region:SL2.40ch02:48907262..48911703- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00050083g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.88|1|0.75|0.66|9|448|590; (*GB) gi|225452300|ref|XP_002272379.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259460 [Vitis vinifera];; (*SWP) sp|Q9RB36|TRUB_FLAJ1 (e_value=4e-60) tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=truB PE=3 SV=1;; (*TAIR) AT5G14460.1 (e_value=0.0) | Symbols: | Pseudouridine synthase family protein | chr5:4660239-4662543 REVERSE LENGTH=540;; (*ITAG) Solyc02g093460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48901701-48907222 transcript_region:SL2.40ch02:48901701..48907222+ go_terms:GO:0006396,GO:0009451 functional_description:"tRNA pseudouridine synthase B (AHRD V1 *-*- D0MI93_RHOM4); contains Interpro domain(s) IPR020103 Pseudouridine synthase, catalytic domain "; GO:0006396,GO:0009451 NbS00050083g0013.1 protein AED:0.24 eAED:0.24 QI:375|1|1|1|0.83|0.71|7|278|271; (*GB) gi|225452304|ref|XP_002272292.1| (e_value=2e-155) PREDICTED: glucuronokinase 1 [Vitis vinifera];; (*SWP) sp|Q93ZC9|GLAK1_ARATH (e_value=9e-150) Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1;; (*TAIR) AT3G01640.1 (e_value=7e-151) | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362;; (*ITAG) Solyc02g093440.2.1 (e_value=5e-178) genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold "; GO:0004335 NbS00010434g0005.1 protein AED:0.35 eAED:0.37 QI:0|0.75|0.6|1|1|1|5|187|289; (*GB) gi|171988286|gb|ACB59355.1| (e_value=2e-67) peroxisome biogenesis factor 13 [Nicotiana tabacum];; (*SWP) sp|Q9SRR0|PEX13_ARATH (e_value=1e-48) Peroxisomal membrane protein 13 OS=Arabidopsis thaliana GN=PEX13 PE=1 SV=1;; (*TAIR) AT3G07560.1 (e_value=1e-49) | Symbols: APM2, PEX13 | peroxin 13 | chr3:2411616-2413310 REVERSE LENGTH=304;; (*ITAG) Solyc06g007700.2.1 (e_value=3e-64) genomic_reference:SL2.40ch06 gene_region:1682841-1687801 transcript_region:SL2.40ch06:1682841..1687801- functional_description:"Peroxisome biogenesis factor 13 (AHRD V1 *-*- B9U2H7_TOBAC)"; NbS00019570g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.5|1|1|1|4|0|645; (*GB) gi|255544856|ref|XP_002513489.1| (e_value=0.0) origin recognition complex subunit, putative [Ricinus communis];; (*SWP) sp|O16810|ORC1_DROME (e_value=3e-90) Origin recognition complex subunit 1 OS=Drosophila melanogaster GN=Orc1 PE=1 SV=2;; (*TAIR) AT4G14700.1 (e_value=0.0) | Symbols: ATORC1A, ORC1A | origin recognition complex 1 | chr4:8422236-8424665 FORWARD LENGTH=809;; (*ITAG) Solyc03g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1013878-1021515 transcript_region:SL2.40ch03:1013878..1021515- go_terms:GO:0010385 functional_description:"Origin recognition complex subunit 1 (AHRD V1 **-- Q945C8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0010385 NbS00019570g0002.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|165; (*ITAG) Solyc03g006420.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:1013878-1021515 transcript_region:SL2.40ch03:1013878..1021515- go_terms:GO:0010385 functional_description:"Origin recognition complex subunit 1 (AHRD V1 **-- Q945C8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0010385 NbS00035041g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.33|1|1|3|0|401; (*GB) gi|14571808|dbj|BAB61098.1| (e_value=0.0) phi-2 [Nicotiana tabacum];; (*SWP) sp|Q9M7Q3|AI5L6_ARATH (e_value=7e-74) ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1;; (*TAIR) AT4G34000.2 (e_value=5e-75) | Symbols: ABF3, DPBF5 | abscisic acid responsive elements-binding factor 3 | chr4:16296008-16297971 FORWARD LENGTH=454;; (*ITAG) Solyc11g044560.1.1 (e_value=7e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35950455-35955757 transcript_region:SL2.40ch11:35950455..35955757- go_terms:GO:0005634,GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 **-- Q0PN11_9FABA); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00034734g0015.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0|1|0.5|0.66|3|0|299; (*GB) gi|255537211|ref|XP_002509672.1| (e_value=2e-125) glycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q8U3Y2|GYAR_PYRFU (e_value=1e-55) Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G12550.1 (e_value=5e-109) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:4274649-4275831 FORWARD LENGTH=323;; (*ITAG) Solyc08g080030.2.1 (e_value=2e-149) genomic_reference:SL2.40ch08 gene_region:60547852-60549724 transcript_region:SL2.40ch08:60547852..60549724+ go_terms:GO:0030267 functional_description:"Glyoxylate reductase (AHRD V1 **** B6THB0_MAIZE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0030267 NbS00034734g0003.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|644; (*GB) gi|225441815|ref|XP_002277987.1| (e_value=0.0) PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera];; (*SWP) sp|Q7XA42|RGA1_SOLBU (e_value=3e-95) Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=4e-69) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc04g015630.2.1 (e_value=4e-119) genomic_reference:SL2.40ch04 gene_region:5927164-5929199 transcript_region:SL2.40ch04:5927164..5929199- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00034734g0013.1 protein AED:0.56 eAED:0.62 QI:0|0|0|0.66|0.5|0.33|3|0|254; (*GB) gi|356498568|ref|XP_003518122.1| (e_value=6e-21) PREDICTED: putative disease resistance protein RGA3-like [Glycine max];; (*ITAG) Solyc08g075630.2.1 (e_value=3e-15) genomic_reference:SL2.40ch08 gene_region:56932274-56935571 transcript_region:SL2.40ch08:56932274..56935571+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00034734g0014.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0.5|0.66|3|0|374; (*GB) gi|392055996|gb|AFM52334.1| (e_value=0.0) anthocyanidin synthase 1 [Nicotiana tabacum];; (*SWP) sp|P51092|LDOX_PETHY (e_value=0.0) Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1;; (*TAIR) AT4G22880.2 (e_value=7e-172) | Symbols: LDOX, TDS4, TT18, ANS | leucoanthocyanidin dioxygenase | chr4:12004905-12006059 REVERSE LENGTH=356;; (*ITAG) Solyc08g080040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60549457-60551317 transcript_region:SL2.40ch08:60549457..60551317- go_terms:GO:0016706 functional_description:"Anthocyanidin synthase (AHRD V1 ***- D3XFG1_THECC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00018237g0002.1 protein AED:0.36 eAED:0.36 QI:65|0.9|1|1|0.9|0.90|11|289|299; (*GB) gi|11133532|sp|Q40518.1|MSK1_TOBAC (e_value=3e-146) RecName: Full=Shaggy-related protein kinase NtK-1;; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=7e-148) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1;; (*TAIR) AT3G05840.1 (e_value=6e-138) | Symbols: ATSK12 | Protein kinase superfamily protein | chr3:1740793-1742927 FORWARD LENGTH=409;; (*ITAG) Solyc01g101000.2.1 (e_value=6e-143) genomic_reference:SL2.40ch01 gene_region:82623105-82629503 transcript_region:SL2.40ch01:82623105..82629503- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018237g0007.1 protein AED:0.50 eAED:0.57 QI:0|0|0.33|0.66|0|0|3|0|70; (*GB) gi|357495837|ref|XP_003618207.1| (e_value=7e-27) ADP-ribosylation factor [Medicago truncatula];; (*SWP) sp|P51822|ARF1_DAUCA (e_value=4e-28) ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2;; (*TAIR) AT5G14670.1 (e_value=1e-28) | Symbols: ATARFA1B, ARFA1B | ADP-ribosylation factor A1B | chr5:4729319-4730495 FORWARD LENGTH=188;; (*ITAG) Solyc05g005190.2.1 (e_value=8e-29) genomic_reference:SL2.40ch05 gene_region:170330-172998 transcript_region:SL2.40ch05:170330..172998+ go_terms:GO:0042802 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q76ME3_WHEAT); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0042802 NbS00061533g0003.1 protein AED:0.34 eAED:0.66 QI:0|0|0|1|1|1|2|0|134 NbS00040855g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|48057667|gb|AAT39966.1| (e_value=2e-59) Putative isopenicillin N epimerase, identical [Solanum demissum];; (*TAIR) AT5G26600.1 (e_value=4e-48) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:9377455-9378882 FORWARD LENGTH=475;; (*ITAG) Solyc05g007590.2.1 (e_value=9e-74) genomic_reference:SL2.40ch05 gene_region:2129095-2130136 transcript_region:SL2.40ch05:2129095..2130136- functional_description:"Isopenicillin N epimerase-like (AHRD V1 ***- Q5JNT6_ORYSJ); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; NbS00040855g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|48057667|gb|AAT39966.1| (e_value=2e-35) Putative isopenicillin N epimerase, identical [Solanum demissum];; (*TAIR) AT5G26600.1 (e_value=1e-27) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:9377455-9378882 FORWARD LENGTH=475;; (*ITAG) Solyc05g007590.2.1 (e_value=2e-44) genomic_reference:SL2.40ch05 gene_region:2129095-2130136 transcript_region:SL2.40ch05:2129095..2130136- functional_description:"Isopenicillin N epimerase-like (AHRD V1 ***- Q5JNT6_ORYSJ); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; NbS00001068g0105.1 protein AED:0.38 eAED:0.39 QI:0|0.5|0.44|0.88|1|0.88|9|0|297 NbS00001068g0106.1 protein AED:0.41 eAED:0.41 QI:21|1|0.5|1|1|1|2|0|130 NbS00024089g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|168 NbS00024089g0007.1 protein AED:0.40 eAED:0.45 QI:0|0.25|0.4|1|0.75|0.6|5|258|265; (*GB) gi|224052944|ref|XP_002297637.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G13570.1 (e_value=8e-20) | Symbols: SCL30A, At-SCL30A | SC35-like splicing factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262;; (*ITAG) Solyc01g005820.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:537499-541732 transcript_region:SL2.40ch01:537499..541732+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 4 (AHRD V1 *--- B6U7F9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00053686g0003.1 protein AED:0.52 eAED:0.52 QI:0|0.33|0|0.75|1|1|4|0|214; (*GB) gi|225450547|ref|XP_002277385.1| (e_value=5e-104) PREDICTED: thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q94AC1|STR6_ARATH (e_value=3e-101) Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1;; (*TAIR) AT1G09280.1 (e_value=2e-102) | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581;; (*ITAG) Solyc01g100730.2.1 (e_value=3e-117) genomic_reference:SL2.40ch01 gene_region:82448519-82456371 transcript_region:SL2.40ch01:82448519..82456371+ functional_description:"UPF0176 protein yceA (AHRD V1 *--- YCEA_ECOL6); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00006428g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|10|0|536; (*GB) gi|225434229|ref|XP_002275950.1| (e_value=5e-125) PREDICTED: uncharacterized protein LOC100259405 isoform 1 [Vitis vinifera];; (*SWP) sp|Q28G87|LARP7_XENTR (e_value=1e-16) La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1;; (*TAIR) AT2G43970.1 (e_value=1e-93) | Symbols: | RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545;; (*ITAG) Solyc12g096640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63807585-63813301 transcript_region:SL2.40ch12:63807585..63813301- go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"La-related protein 7 (AHRD V1 *--- LARP7_XENTR); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0030529,GO:0000166 NbS00007013g0008.1 protein AED:0.07 eAED:0.11 QI:0|0.25|0.2|1|0.5|0.4|5|86|595; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-110) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=4e-110) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00024267g0008.1 protein AED:0.11 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|299; (*GB) gi|359492412|ref|XP_003634410.1| (e_value=4e-20) PREDICTED: protein terminal ear1-like [Vitis vinifera];; (*SWP) sp|O65001|TE1_MAIZE (e_value=2e-17) Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1;; (*TAIR) AT1G37140.1 (e_value=1e-22) | Symbols: MCT1 | MEI2 C-terminal RRM only like 1 | chr1:14170351-14172040 REVERSE LENGTH=233;; (*ITAG) Solyc05g056360.1.1 (e_value=7e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64845418-64847913 transcript_region:SL2.40ch05:64845418..64847913+ functional_description:"MEI2-like RNA binding protein (AHRD V1 *--- Q652K6_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; NbS00024267g0007.1 protein AED:0.34 eAED:0.36 QI:242|0.62|0.58|1|0.62|0.58|17|0|747; (*GB) gi|224077660|ref|XP_002305349.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DEL2|CLPT1_DANRE (e_value=7e-146) Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1;; (*TAIR) AT5G08500.1 (e_value=0.0) | Symbols: | Transmembrane CLPTM1 family protein | chr5:2748261-2751590 FORWARD LENGTH=590;; (*ITAG) Solyc05g056350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64836178-64842210 transcript_region:SL2.40ch05:64836178..64842210+ go_terms:GO:0005515 functional_description:"Cleft lip and palate associated transmembrane protein-like (AHRD V1 ***- Q9FNN8_ARATH); contains Interpro domain(s) IPR008429 Cleft lip and palate transmembrane 1 "; GO:0005515 NbS00044522g0002.1 protein AED:0.02 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|479; (*GB) gi|359480504|ref|XP_002262746.2| (e_value=6e-61) PREDICTED: uncharacterized protein LOC100249503 [Vitis vinifera];; (*TAIR) AT4G40020.1 (e_value=2e-33) | Symbols: | Myosin heavy chain-related protein | chr4:18553453-18555300 REVERSE LENGTH=615;; (*ITAG) Solyc11g010210.1.1 (e_value=4e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3280166-3281911 transcript_region:SL2.40ch11:3280166..3281911- functional_description:"SKIP interacting protein 3 (Fragment) (AHRD V1 *-*- B8Q889_ORYSI)"; NbS00044522g0006.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.5|0.66|3|485|112; (*GB) gi|147826736|emb|CAN70652.1| (e_value=1e-76) hypothetical protein VITISV_010022 [Vitis vinifera];; (*SWP) sp|Q71H73|H33_VITVI (e_value=4e-78) Histone H3.3 OS=Vitis vinifera PE=2 SV=3;; (*TAIR) AT5G10980.1 (e_value=3e-79) | Symbols: | Histone superfamily protein | chr5:3472591-3473349 REVERSE LENGTH=136;; (*ITAG) Solyc11g010230.1.1 (e_value=3e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3290641-3291380 transcript_region:SL2.40ch11:3290641..3291380- go_terms:GO:0003677,GO:0000786 functional_description:"Histone H3 (AHRD V1 ***- A8MRL0_ARATH); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0003677,GO:0000786 NbS00044522g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.5|1|0.66|0.75|4|0|282; (*GB) gi|3912951|sp|O49998.1|1433F_TOBAC (e_value=3e-179) RecName: Full=14-3-3-like protein F;; (*SWP) sp|O49998|1433F_TOBAC (e_value=0.0) 14-3-3-like protein F OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=2e-158) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc11g010200.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3274709-3275901 transcript_region:SL2.40ch11:3274709..3275901+ go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00004992g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.9|0.72|1|0.7|0.72|11|169|704; (*GB) gi|224134052|ref|XP_002321724.1| (e_value=4e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT3G48710.1 (e_value=2e-55) | Symbols: | DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462;; (*ITAG) Solyc06g072660.2.1 (e_value=3e-78) genomic_reference:SL2.40ch06 gene_region:41196763-41202118 transcript_region:SL2.40ch06:41196763..41202118- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00012273g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|5|436|249; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=3e-147) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=8e-131) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=6e-132) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=6e-150) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00060160g0002.1 protein AED:0.31 eAED:0.31 QI:31|1|0.66|1|0|0.33|3|0|123; (*GB) gi|224063535|ref|XP_002301192.1| (e_value=6e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT4G33380.1 (e_value=8e-17) | Symbols: | unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:16072064-16074605 FORWARD LENGTH=328;; (*ITAG) Solyc04g079160.2.1 (e_value=1e-41) genomic_reference:SL2.40ch04 gene_region:61324551-61331846 transcript_region:SL2.40ch04:61324551..61331846+ functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 *--- A8HX99_CHLRE)"; NbS00020742g0012.1 protein AED:0.25 eAED:0.25 QI:152|0.92|0.92|1|0.92|0.88|26|342|908; (*GB) gi|350535204|ref|NP_001233926.1| (e_value=0.0) insulin degrading enzyme [Solanum lycopersicum];; (*SWP) sp|O22941|PXM16_ARATH (e_value=0.0) Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1;; (*TAIR) AT2G41790.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr2:17429453-17436110 REVERSE LENGTH=970;; (*ITAG) Solyc04g015680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5956632-5977381 transcript_region:SL2.40ch04:5956632..5977381+ go_terms:GO:0004222 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q93YG9_SOLLC); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0004222 NbS00020742g0011.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0.5|2|0|161; (*GB) gi|222640120|gb|EEE68252.1| (e_value=6e-17) hypothetical protein OsJ_26458 [Oryza sativa Japonica Group];; (*ITAG) Solyc04g015630.2.1 (e_value=2e-59) genomic_reference:SL2.40ch04 gene_region:5927164-5929199 transcript_region:SL2.40ch04:5927164..5929199- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00020742g0010.1 protein AED:0.32 eAED:0.50 QI:0|0|0|1|0.5|0.66|3|0|376; (*GB) gi|255577491|ref|XP_002529624.1| (e_value=9e-58) leucine-rich repeat containing protein, putative [Ricinus communis];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=8e-49) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G14470.1 (e_value=2e-40) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g106410.1.1 (e_value=1e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00020742g0003.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|105; (*TAIR) AT3G57450.1 (e_value=8e-11) | Symbols: | unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21262028-21262318 FORWARD LENGTH=96;; (*ITAG) Solyc04g015700.1.1 (e_value=2e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:6007212-6007472 transcript_region:SL2.40ch04:6007212..6007472- functional_description:"Unknown Protein (AHRD V1)"; NbS00016103g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0.33|1|0|0.33|3|77|879; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-82) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=6e-76) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc04g007070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:791050-796086 transcript_region:SL2.40ch04:791050..796086+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00008228g0016.1 protein AED:0.10 eAED:0.10 QI:0|0.57|0.12|1|0.57|0.37|8|0|1433; (*GB) gi|145308227|gb|ABP57378.1| (e_value=0.0) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc02g067010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31828637-31834655 transcript_region:SL2.40ch02:31828637..31834655- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00008228g0023.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|1|1|2|0|109; (*GB) gi|391738036|sp|P0DI44.1|CASP_SOLTU (e_value=2e-51) RecName: Full=Casparian strip membrane protein 1;; (*SWP) sp|P0DI44|CASP_SOLTU (e_value=6e-53) Casparian strip membrane protein 1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G15290.1 (e_value=4e-30) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:4967094-4967846 FORWARD LENGTH=187;; (*ITAG) Solyc02g067190.2.1 (e_value=1e-44) genomic_reference:SL2.40ch02 gene_region:31964035-31965710 transcript_region:SL2.40ch02:31964035..31965710+ functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_MAIZE); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00008228g0003.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|256; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=5e-28) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc05g021350.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00008228g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|1242; (*GB) gi|296082940|emb|CBI22241.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LXF4|PP384_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1;; (*TAIR) AT5G15280.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4962293-4965976 FORWARD LENGTH=1227;; (*ITAG) Solyc02g067200.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31967014-31970959 transcript_region:SL2.40ch02:31967014..31970959- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008228g0019.1 protein AED:0.00 eAED:0.14 QI:0|1|0.5|1|1|1|2|71|513; (*GB) gi|225452887|ref|XP_002283932.1| (e_value=2e-52) PREDICTED: uncharacterized protein At5g39570 [Vitis vinifera];; (*SWP) sp|Q9FKA5|Y5957_ARATH (e_value=7e-27) Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1;; (*TAIR) AT5G39570.1 (e_value=5e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:15844021-15845827 FORWARD LENGTH=381;; (*ITAG) Solyc02g088260.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:44988643-44994359 transcript_region:SL2.40ch02:44988643..44994359- functional_description:"Latex abundant protein 1 (AHRD V1 *--- Q6XNP6_HEVBR)"; NbS00008228g0018.1 protein AED:0.32 eAED:0.32 QI:130|0.66|1|1|1|1|4|239|218; (*GB) gi|359489009|ref|XP_002278703.2| (e_value=2e-85) PREDICTED: uncharacterized protein LOC100249192 [Vitis vinifera];; (*TAIR) AT5G39530.1 (e_value=3e-77) | Symbols: | Protein of unknown function (DUF1997) | chr5:15826285-15827517 REVERSE LENGTH=239;; (*ITAG) Solyc02g067120.2.1 (e_value=9e-105) genomic_reference:SL2.40ch02 gene_region:31920286-31922757 transcript_region:SL2.40ch02:31920286..31922757- functional_description:"Genomic DNA chromosome 5 P1 clone MUL8 (AHRD V1 ***- Q9FLY2_ARATH); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 "; NbS00030293g0010.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|0.75|4|0|707; (*GB) gi|22652123|gb|AAN03625.1|AF406701_1 (e_value=0.0) BEL1-related homeotic protein 22, partial [Solanum tuberosum];; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=6e-113) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=5e-114) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc02g065490.2.1 (e_value=1e-173) genomic_reference:SL2.40ch02 gene_region:31220335-31228256 transcript_region:SL2.40ch02:31220335..31228256- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 4 (AHRD V1 **-- BLH4_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00020567g0006.1 protein AED:0.15 eAED:0.16 QI:68|0.77|0.7|0.9|0.44|0.6|10|0|474; (*GB) gi|359482241|ref|XP_002266914.2| (e_value=0.0) PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=3e-33) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT2G41190.1 (e_value=2e-168) | Symbols: | Transmembrane amino acid transporter family protein | chr2:17167561-17170145 REVERSE LENGTH=536;; (*ITAG) Solyc03g078150.2.1 (e_value=8e-162) genomic_reference:SL2.40ch03 gene_region:43677589-43684882 transcript_region:SL2.40ch03:43677589..43684882+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LGK0_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00020567g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.33|1|1|3|0|111; (*GB) gi|116784909|gb|ABK23516.1| (e_value=4e-23) unknown [Picea sitchensis];; (*TAIR) AT4G30996.1 (e_value=1e-20) | Symbols: | Protein of unknown function (DUF1068) | chr4:15101464-15102461 FORWARD LENGTH=172;; (*ITAG) Solyc01g098600.2.1 (e_value=4e-41) genomic_reference:SL2.40ch01 gene_region:80834334-80837989 transcript_region:SL2.40ch01:80834334..80837989+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00009266g0009.1 protein AED:0.02 eAED:0.02 QI:74|0.5|1|1|1|1|3|200|612; (*GB) gi|283766073|gb|ADB28437.1| (e_value=0.0) acyltransferase [Capsicum annuum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=1e-58) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=1e-57) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc02g081740.1.1 (e_value=3e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40149035-40150445 transcript_region:SL2.40ch02:40149035..40150445- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00009266g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|234; (*ITAG) Solyc01g017760.1.1 (e_value=6e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025607g0014.1 protein AED:0.30 eAED:0.30 QI:0|0.4|0.16|1|0.4|0.33|6|0|418; (*GB) gi|18407151|ref|NP_564775.1| (e_value=2e-134) protein S-domain-1 29 [Arabidopsis thaliana];; (*SWP) sp|O64782|SD129_ARATH (e_value=6e-136) G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 OS=Arabidopsis thaliana GN=SD129 PE=1 SV=1;; (*TAIR) AT1G61380.1 (e_value=4e-137) | Symbols: SD1-29 | S-domain-1 29 | chr1:22646277-22649401 REVERSE LENGTH=805;; (*ITAG) Solyc03g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1281367-1289556 transcript_region:SL2.40ch03:1281367..1289556+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00025607g0013.1 protein AED:0.31 eAED:0.33 QI:0|0|0|0.5|0|0.5|2|0|442; (*GB) gi|255567489|ref|XP_002524724.1| (e_value=3e-111) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|O64782|SD129_ARATH (e_value=2e-88) G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 OS=Arabidopsis thaliana GN=SD129 PE=1 SV=1;; (*TAIR) AT1G61380.1 (e_value=1e-89) | Symbols: SD1-29 | S-domain-1 29 | chr1:22646277-22649401 REVERSE LENGTH=805;; (*ITAG) Solyc03g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1281367-1289556 transcript_region:SL2.40ch03:1281367..1289556+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00025607g0010.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|189; (*GB) gi|156070790|gb|ABU45202.1| (e_value=7e-69) unknown [Solanum bulbocastanum];; (*TAIR) AT4G36660.1 (e_value=1e-67) | Symbols: | Protein of unknown function (DUF1195) | chr4:17285953-17287281 REVERSE LENGTH=179;; (*ITAG) Solyc03g034090.2.1 (e_value=5e-81) genomic_reference:SL2.40ch03 gene_region:10063965-10069238 transcript_region:SL2.40ch03:10063965..10069238+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00025607g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|297819754|ref|XP_002877760.1| (e_value=2e-64) hypothetical protein ARALYDRAFT_906395 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G50685.1 (e_value=3e-64) | Symbols: | unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:18834272-18834748 REVERSE LENGTH=158;; (*ITAG) Solyc03g034070.1.1 (e_value=2e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:10049783-10050151 transcript_region:SL2.40ch03:10049783..10050151- functional_description:"P-166-4_1 (Fragment) (AHRD V1 *-*- Q4VDD8_PINRE)"; NbS00034849g0004.1 protein AED:0.45 eAED:0.45 QI:0|0.63|0.58|0.83|0.63|0.75|12|145|344; (*GB) gi|225446674|ref|XP_002281976.1| (e_value=2e-160) PREDICTED: uncharacterized protein LOC100260760 [Vitis vinifera];; (*SWP) sp|Q24331|TID_DROVI (e_value=1e-11) Protein tumorous imaginal discs, mitochondrial OS=Drosophila virilis GN=l(2)tid PE=2 SV=1;; (*TAIR) AT2G42750.1 (e_value=1e-144) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:17793404-17795419 FORWARD LENGTH=344;; (*ITAG) Solyc07g055260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60670623-60676071 transcript_region:SL2.40ch07:60670623..60676071+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 *-*- B6TAW2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00050099g0004.1 protein AED:0.12 eAED:0.12 QI:156|0.85|0.75|1|0.57|0.87|8|0|338; (*GB) gi|224107623|ref|XP_002314540.1| (e_value=4e-126) predicted protein [Populus trichocarpa];; (*TAIR) AT1G24310.1 (e_value=4e-112) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). | chr1:8624192-8626179 FORWARD LENGTH=377;; (*ITAG) Solyc12g035650.1.1 (e_value=9e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:28332415-28346134 transcript_region:SL2.40ch12:28332415..28346134- functional_description:"Nucleoporin p54 (AHRD V1 *-*- B5X399_SALSA)"; NbS00045788g0007.1 protein AED:0.12 eAED:0.12 QI:107|1|0.91|1|1|1|12|0|982; (*GB) gi|255551016|ref|XP_002516556.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5ZL00|K0090_CHICK (e_value=1e-96) Uncharacterized protein KIAA0090 homolog OS=Gallus gallus GN=RCJMB04_8i12 PE=2 SV=1;; (*TAIR) AT5G11560.1 (e_value=0.0) | Symbols: | catalytics | chr5:3709734-3713994 REVERSE LENGTH=982;; (*ITAG) Solyc09g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2077574-2085153 transcript_region:SL2.40ch09:2077574..2085153- go_terms:GO:0005515,GO:0003824 functional_description:"KIAA0090 homolog (AHRD V1 **-- B5X182_SALSA); contains Interpro domain(s) IPR011678 Protein of unknown function DUF1620 "; GO:0005515,GO:0003824 NbS00045788g0010.1 protein AED:0.71 eAED:0.71 QI:0|1|0.5|1|0|0|2|0|81 NbS00045788g0006.1 protein AED:0.05 eAED:0.05 QI:275|1|1|1|0.66|0.8|10|381|503; (*GB) gi|359482287|ref|XP_002263129.2| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=5e-90) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT2G36670.2 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=507;; (*ITAG) Solyc09g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00001288g0007.1 protein AED:0.05 eAED:0.09 QI:0|1|0.62|1|1|1|8|0|692; (*GB) gi|359481019|ref|XP_002269768.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267295 [Vitis vinifera];; (*TAIR) AT2G21720.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr2:9273696-9276802 FORWARD LENGTH=734;; (*ITAG) Solyc05g009240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3379425-3384614 transcript_region:SL2.40ch05:3379425..3384614+ functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00059728g0105.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|432 NbS00049752g0004.1 protein AED:0.25 eAED:0.25 QI:198|0.2|0.16|0.83|1|1|6|0|836; (*GB) gi|356567262|ref|XP_003551840.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At1g67000-like [Glycine max];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=6e-155) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=5e-156) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc02g086270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43557735-43566755 transcript_region:SL2.40ch02:43557735..43566755- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012835g0006.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.57|0.85|0.83|0.85|7|0|168; (*GB) gi|225442545|ref|XP_002284206.1| (e_value=4e-50) PREDICTED: uncharacterized protein LOC100241139 [Vitis vinifera];; (*TAIR) AT3G16250.1 (e_value=1e-47) | Symbols: NDF4 | NDH-dependent cyclic electron flow 1 | chr3:5507091-5508320 REVERSE LENGTH=204;; (*ITAG) Solyc08g083360.2.1 (e_value=2e-73) genomic_reference:SL2.40ch08 gene_region:62996571-62997740 transcript_region:SL2.40ch08:62996571..62997740+ go_terms:GO:0051536 functional_description:"Ferredoxin (AHRD V1 *-*- D8FXV1_9CYAN); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536 NbS00030409g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|310892548|gb|ADP37416.1| (e_value=1e-72) ethylene-responsive-element-binding factor 1 [Petunia x hybrida];; (*SWP) sp|Q9XI33|WIN1_ARATH (e_value=2e-62) Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1;; (*TAIR) AT1G15360.1 (e_value=1e-63) | Symbols: SHN1, WIN1 | Integrase-type DNA-binding superfamily protein | chr1:5283609-5284506 FORWARD LENGTH=199;; (*ITAG) Solyc03g116610.2.1 (e_value=4e-71) genomic_reference:SL2.40ch03 gene_region:60004948-60006047 transcript_region:SL2.40ch03:60004948..60006047- go_terms:GO:0043565,GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0043565,GO:0003700 NbS00030409g0003.1 protein AED:0.26 eAED:0.26 QI:232|0.57|0.62|0.87|0.85|0.75|8|853|287; (*GB) gi|47558819|gb|AAT35533.1| (e_value=5e-91) CAPIP2 [Capsicum annuum];; (*TAIR) AT1G15370.1 (e_value=2e-71) | Symbols: | SNARE-like superfamily protein | chr1:5287135-5288375 FORWARD LENGTH=147;; (*ITAG) Solyc03g116590.2.1 (e_value=3e-97) genomic_reference:SL2.40ch03 gene_region:59991933-59993885 transcript_region:SL2.40ch03:59991933..59993885- functional_description:"Embryo-specific 3 (AHRD V1 ***- Q2HUA9_MEDTR); contains Interpro domain(s) IPR010417 Embryo-specific 3 "; NbS00040787g0002.1 protein AED:0.03 eAED:0.03 QI:63|1|0.5|1|1|1|2|0|208; (*GB) gi|224063537|ref|XP_002301193.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g079170.2.1 (e_value=3e-59) genomic_reference:SL2.40ch04 gene_region:61333035-61334522 transcript_region:SL2.40ch04:61333035..61334522+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040787g0001.1 protein AED:0.33 eAED:0.33 QI:478|1|1|1|0.8|0.66|6|404|291; (*GB) gi|225458579|ref|XP_002284610.1| (e_value=2e-132) PREDICTED: uncharacterized protein LOC100248838 [Vitis vinifera];; (*TAIR) AT4G33380.1 (e_value=1e-107) | Symbols: | unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:16072064-16074605 FORWARD LENGTH=328;; (*ITAG) Solyc04g079160.2.1 (e_value=4e-176) genomic_reference:SL2.40ch04 gene_region:61324551-61331846 transcript_region:SL2.40ch04:61324551..61331846+ functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 *--- A8HX99_CHLRE)"; NbS00040787g0011.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|221; (*GB) gi|225458573|ref|XP_002284591.1| (e_value=5e-87) PREDICTED: uncharacterized protein At1g47420, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SX77|UMP6_ARATH (e_value=4e-80) Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1;; (*TAIR) AT1G47420.1 (e_value=3e-81) | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395774-17397176 REVERSE LENGTH=257;; (*ITAG) Solyc04g079180.2.1 (e_value=3e-134) genomic_reference:SL2.40ch04 gene_region:61334211-61336777 transcript_region:SL2.40ch04:61334211..61336777- functional_description:"Unknown Protein (AHRD V1)"; NbS00059498g0016.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.42|1|0.83|0.85|7|93|663; (*GB) gi|225450269|ref|XP_002266990.1| (e_value=4e-103) PREDICTED: uncharacterized protein LOC100257965 [Vitis vinifera];; (*TAIR) AT2G31920.1 (e_value=8e-47) | Symbols: | Plant protein of unknown function (DUF936) | chr2:13574053-13576367 REVERSE LENGTH=585;; (*ITAG) Solyc01g081640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73342271-73346170 transcript_region:SL2.40ch01:73342271..73346170- functional_description:"Legume lectin beta domain (AHRD V1 ***- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00059498g0011.1 protein AED:0.01 eAED:0.01 QI:0|0.83|0.71|0.85|0.5|0.71|7|925|152; (*GB) gi|224091357|ref|XP_002309230.1| (e_value=5e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=2e-80) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=1e-81) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc12g095880.1.1 (e_value=2e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63327094-63335562 transcript_region:SL2.40ch12:63327094..63335562- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00059498g0003.1 protein AED:0.14 eAED:0.15 QI:0|1|0|1|1|1|2|0|253; (*GB) gi|224121098|ref|XP_002330903.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g081630.2.1 (e_value=2e-80) genomic_reference:SL2.40ch01 gene_region:73337518-73342163 transcript_region:SL2.40ch01:73337518..73342163+ functional_description:"Auxin-regulated protein (AHRD V1 *-*- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00059498g0013.1 protein AED:0.62 eAED:0.69 QI:38|0|0|0.66|0|0.33|3|0|50; (*GB) gi|224104513|ref|XP_002313462.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05577.1 (e_value=2e-21) | Symbols: | Domain of unknown function (DUF966) | chr1:1662643-1664288 REVERSE LENGTH=372;; (*ITAG) Solyc01g081630.2.1 (e_value=6e-26) genomic_reference:SL2.40ch01 gene_region:73337518-73342163 transcript_region:SL2.40ch01:73337518..73342163+ functional_description:"Auxin-regulated protein (AHRD V1 *-*- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00012189g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=5e-137) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=9e-33) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=7e-34) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g071420.1.1 (e_value=1e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51985618-51989247 transcript_region:SL2.40ch11:51985618..51989247+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00018310g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|509; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|O81973|C93A3_SOYBN (e_value=1e-118) Cytochrome P450 93A3 OS=Glycine max GN=CYP93A3 PE=2 SV=1;; (*TAIR) AT5G57260.1 (e_value=8e-119) | Symbols: CYP71B10 | cytochrome P450, family 71, subfamily B, polypeptide 10 | chr5:23198694-23200273 REVERSE LENGTH=502;; (*ITAG) Solyc04g011680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00027457g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|157; (*GB) gi|155573899|gb|ABU24346.1| (e_value=1e-105) mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa];; (*SWP) sp|Q40578|AOX2_TOBAC (e_value=1e-105) Alternative oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2;; (*TAIR) AT3G22370.1 (e_value=3e-104) | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354;; (*ITAG) Solyc08g005550.2.1 (e_value=7e-103) genomic_reference:SL2.40ch08 gene_region:408345-410739 transcript_region:SL2.40ch08:408345..410739+ go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** C1I1U5_NICGU); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00021917g0006.1 protein AED:0.11 eAED:0.11 QI:163|1|1|1|1|1|3|496|328; (*GB) gi|356527344|ref|XP_003532271.1| (e_value=2e-153) PREDICTED: uncharacterized protein LOC100819026 isoform 1 [Glycine max];; (*SWP) sp|O14270|FHL1_SCHPO (e_value=4e-16) Fork head transcription factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fhl1 PE=2 SV=2;; (*TAIR) AT3G07220.1 (e_value=5e-136) | Symbols: | SMAD/FHA domain-containing protein | chr3:2297968-2299407 FORWARD LENGTH=320;; (*ITAG) Solyc09g059500.2.1 (e_value=3e-172) genomic_reference:SL2.40ch09 gene_region:50169017-50179394 transcript_region:SL2.40ch09:50169017..50179394+ go_terms:GO:0016563 functional_description:"Forkhead box K1 (AHRD V1 *--- C1K2Z9_ORYLA); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0016563 NbS00021917g0004.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|1|1|2|0|67 NbS00021917g0009.1 protein AED:0.59 eAED:0.59 QI:0|0.5|0|1|1|1|3|0|80; (*GB) gi|225470816|ref|XP_002264634.1| (e_value=1e-24) PREDICTED: wound-induced basic protein [Vitis vinifera];; (*SWP) sp|Q09020|PR4_PHAVU (e_value=2e-25) Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1;; (*TAIR) AT3G07230.1 (e_value=3e-21) | Symbols: | wound-responsive protein-related | chr3:2299920-2300183 FORWARD LENGTH=46;; (*ITAG) Solyc06g083340.2.1 (e_value=1e-28) genomic_reference:SL2.40ch06 gene_region:45068054-45069921 transcript_region:SL2.40ch06:45068054..45069921- functional_description:"Wound-induced basic protein (AHRD V1 ***- PR4_PHAVU); contains Interpro domain(s) IPR012643 Wound-inducible basic "; NbS00035852g0004.1 protein AED:0.09 eAED:0.09 QI:368|0|0|1|1|1|2|0|266; (*GB) gi|302142584|emb|CBI19787.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G51060.1 (e_value=1e-17) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc02g084680.2.1 (e_value=2e-33) genomic_reference:SL2.40ch02 gene_region:42356126-42358282 transcript_region:SL2.40ch02:42356126..42358282+ go_terms:GO:0003700,GO:0046982 functional_description:"Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; GO:0003700,GO:0046982 NbS00021220g0009.1 protein AED:0.25 eAED:0.26 QI:0|0.25|0|0.8|1|0.8|5|0|411; (*GB) gi|356570616|ref|XP_003553481.1| (e_value=7e-37) PREDICTED: E3 ubiquitin protein ligase DRIP2-like [Glycine max];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=7e-32) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=5e-33) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc09g083310.1.1 (e_value=4e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64381854-64384291 transcript_region:SL2.40ch09:64381854..64384291- functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LC67_ARALY)"; NbS00021220g0010.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|577; (*GB) gi|224066305|ref|XP_002302074.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBR6|PLA16_ARATH (e_value=2e-165) Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2;; (*TAIR) AT2G30550.2 (e_value=1e-166) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:13014884-13017005 FORWARD LENGTH=529;; (*ITAG) Solyc09g065890.2.1 (e_value=4e-173) genomic_reference:SL2.40ch09 gene_region:59781066-59784409 transcript_region:SL2.40ch09:59781066..59784409+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00021220g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|225437223|ref|XP_002281907.1| (e_value=8e-30) PREDICTED: phospholipase A1-Igamma2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3EBR6|PLA16_ARATH (e_value=2e-22) Phospholipase A1-Igamma2, chloroplastic OS=Arabidopsis thaliana GN=At2g30550 PE=1 SV=2;; (*TAIR) AT2G30550.2 (e_value=1e-23) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:13014884-13017005 FORWARD LENGTH=529;; (*ITAG) Solyc09g065890.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:59781066-59784409 transcript_region:SL2.40ch09:59781066..59784409+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00016861g0001.1 protein AED:0.00 eAED:0.00 QI:188|1|0.5|1|0|0|2|0|448; (*GB) gi|359482951|ref|XP_003632864.1| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100265296 [Vitis vinifera];; (*TAIR) AT1G52380.1 (e_value=1e-65) | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr1:19509979-19511301 FORWARD LENGTH=440;; (*ITAG) Solyc03g120280.1.1 (e_value=2e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62781048-62782397 transcript_region:SL2.40ch03:62781048..62782397+ go_terms:GO:0005643,GO:0046907 functional_description:"RAN binding protein 3 (AHRD V1 *-*- Q6DJQ7_XENTR); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0005643,GO:0046907 NbS00016861g0012.1 protein AED:0.23 eAED:0.23 QI:215|0.79|0.84|0.92|0.79|0.88|25|258|1016; (*GB) gi|297743300|emb|CBI36167.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C827|COB22_ARATH (e_value=0.0) Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1;; (*TAIR) AT1G52360.1 (e_value=0.0) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc03g120270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62768790-62778357 transcript_region:SL2.40ch03:62768790..62778357+ go_terms:GO:0005080,GO:0016286 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- C5FJ65_NANOT); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0005080,GO:0016286 NbS00016861g0019.1 protein AED:0.00 eAED:0.00 QI:13|1|1|1|0|0|2|322|125; (*GB) gi|225442677|ref|XP_002284798.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100256715 [Vitis vinifera];; (*SWP) sp|A8MRP4|THNL2_ARATH (e_value=1e-12) Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1;; (*TAIR) AT1G12663.1 (e_value=1e-13) | Symbols: | Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. | chr1:4310969-4311457 FORWARD LENGTH=115;; (*ITAG) Solyc03g120290.2.1 (e_value=5e-69) genomic_reference:SL2.40ch03 gene_region:62783284-62784312 transcript_region:SL2.40ch03:62783284..62784312- functional_description:"Unknown Protein (AHRD V1)"; NbS00016861g0017.1 protein AED:0.16 eAED:0.20 QI:96|0.88|0.7|1|0.22|0.1|10|911|257; (*GB) gi|224070883|ref|XP_002303279.1| (e_value=6e-102) sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Populus trichocarpa];; (*SWP) sp|Q9LW86|SUT34_ARATH (e_value=1e-91) Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1;; (*TAIR) AT3G15990.1 (e_value=7e-93) | Symbols: SULTR3;4 | sulfate transporter 3;4 | chr3:5427081-5430679 FORWARD LENGTH=653;; (*ITAG) Solyc03g120250.2.1 (e_value=2e-122) genomic_reference:SL2.40ch03 gene_region:62751314-62755593 transcript_region:SL2.40ch03:62751314..62755593- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00016861g0010.1 protein AED:0.61 eAED:0.61 QI:0|0|0.33|0.33|1|1|3|23|67 NbS00020116g0008.1 protein AED:0.27 eAED:0.27 QI:270|1|1|1|0.92|0.8|15|1148|305; (*GB) gi|52699549|gb|AAU86897.1| (e_value=2e-176) glycosyl hydrolase family-like protein [Salvia miltiorrhiza];; (*SWP) sp|P14749|AGAL_CYATE (e_value=3e-126) Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=1 SV=1;; (*TAIR) AT3G56310.1 (e_value=1e-163) | Symbols: | Melibiase family protein | chr3:20882886-20885745 FORWARD LENGTH=437;; (*ITAG) Solyc06g050130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28975752-28981918 transcript_region:SL2.40ch06:28975752..28981918- go_terms:GO:0004557 functional_description:"Alpha-galactosidase-like protein (AHRD V1 **** Q9LYL2_ARATH); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557 NbS00020116g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|76; (*GB) gi|57013907|ref|YP_173380.1| (e_value=2e-33) ribosomal protein S12 [Nicotiana tabacum];; (*SWP) sp|Q95869|RT12_NICSY (e_value=5e-34) Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris GN=RPS12 PE=3 SV=1;; (*ITAG) ATMG00980.1 (e_value=2e-31) | Symbols: RPSL2 | Ribosomal protein S12/S23 family protein | chrM:260224-260601 REVERSE LENGTH=125;; (*ITAG) Solyc11g056360.1.1 (e_value=3e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43110058-43110498 transcript_region:SL2.40ch11:43110058..43110498- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- C8PSU8_9SPIO); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0003735,GO:0005515 NbS00020116g0010.1 protein AED:0.89 eAED:0.89 QI:146|0|0.33|0.33|0|0.33|3|0|92 NbS00024862g0001.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|372995481|gb|AEY11296.1| (e_value=2e-34) pathogenesis-related protein PR10 [Nicotiana tabacum];; (*SWP) sp|P17642|PRS2_SOLTU (e_value=6e-30) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*ITAG) Solyc09g090970.2.1 (e_value=1e-32) genomic_reference:SL2.40ch09 gene_region:65693954-65695375 transcript_region:SL2.40ch09:65693954..65695375- go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q84LA7_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00052190g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|1|1|1|3|0|457; (*GB) gi|225460185|ref|XP_002279455.1| (e_value=2e-147) PREDICTED: uncharacterized protein LOC100260279 [Vitis vinifera];; (*SWP) sp|Q3AQ69|Y1601_CHLCH (e_value=1e-24) UPF0301 protein Cag_1601 OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1601 PE=3 SV=1;; (*TAIR) AT1G33780.1 (e_value=2e-117) | Symbols: | Protein of unknown function (DUF179) | chr1:12244799-12246034 REVERSE LENGTH=325;; (*ITAG) Solyc11g030710.1.1 (e_value=4e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:19640087-19648210 transcript_region:SL2.40ch11:19640087..19648210+ functional_description:"Homology to unknown gene (AHRD V1 **-- Q00XE1_OSTTA); contains Interpro domain(s) IPR003774 Protein of unknown function DUF179 "; NbS00020991g0023.1 protein AED:0.08 eAED:0.08 QI:78|1|1|1|0.6|0.66|6|181|233; (*GB) gi|225452486|ref|XP_002274582.1| (e_value=2e-76) PREDICTED: bidirectional sugar transporter SWEET6b [Vitis vinifera];; (*SWP) sp|A2YZ24|SWT7B_ORYSI (e_value=9e-78) Bidirectional sugar transporter SWEET7b OS=Oryza sativa subsp. indica GN=SWEET7B PE=3 SV=1;; (*TAIR) AT5G62850.1 (e_value=7e-71) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc02g086920.1.1 (e_value=8e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44083124-44084780 transcript_region:SL2.40ch02:44083124..44084780- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00020991g0019.1 protein AED:0.12 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|293; (*GB) gi|33338872|gb|AAQ14193.1|AF238305_1 (e_value=8e-171) calcium homeostasis regulator CHoR1 [Solanum tuberosum];; (*TAIR) AT3G55250.1 (e_value=2e-114) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 46 Blast hits to 46 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20479302-20480324 FORWARD LENGTH=277;; (*ITAG) Solyc02g086890.2.1 (e_value=5e-172) genomic_reference:SL2.40ch02 gene_region:44067938-44069907 transcript_region:SL2.40ch02:44067938..44069907- functional_description:"Calcium homeostasis regulator chor1 (Fragment) (AHRD V1 *-*- A6N1L7_ORYSI)"; NbS00020991g0024.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.71|1|0.83|0.71|7|1228|452; (*GB) gi|255552604|ref|XP_002517345.1| (e_value=0.0) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|O49939|TLP40_SPIOL (e_value=0.0) Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1;; (*TAIR) AT3G01480.1 (e_value=0.0) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437;; (*ITAG) Solyc02g086910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44078232-44082017 transcript_region:SL2.40ch02:44078232..44082017- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 ***- A8IRU6_CHLRE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00020991g0028.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|0.75|0.33|0.5|4|0|202; (*GB) gi|225452466|ref|XP_002274501.1| (e_value=8e-41) PREDICTED: CASP-like protein At2g36330-like [Vitis vinifera];; (*SWP) sp|D7LIR2|CSPLI_ARALL (e_value=9e-25) CASP-like protein ARALYDRAFT_482607 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_482607 PE=3 SV=1;; (*TAIR) AT2G36330.1 (e_value=2e-25) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283;; (*ITAG) Solyc02g086860.2.1 (e_value=5e-65) genomic_reference:SL2.40ch02 gene_region:44040990-44044579 transcript_region:SL2.40ch02:44040990..44044579- functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00020991g0020.1 protein AED:0.31 eAED:0.36 QI:183|0.78|0.73|0.93|0.78|0.8|15|461|513; (*GB) gi|1732587|gb|AAB38796.1| (e_value=0.0) farnesyltransferase beta subunit, partial [Nicotiana glutinosa];; (*SWP) sp|Q04903|FNTB_PEA (e_value=4e-174) Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB PE=2 SV=1;; (*TAIR) AT5G40280.1 (e_value=1e-131) | Symbols: ERA1, ATFTB, WIG | Prenyltransferase family protein | chr5:16101391-16104783 FORWARD LENGTH=482;; (*ITAG) Solyc02g086870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44045160-44057225 transcript_region:SL2.40ch02:44045160..44057225- go_terms:GO:0005515 functional_description:"Farnesyltransferase beta subunit (AHRD V1 ***- Q6J6P6_CATRO); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0005515 NbS00020991g0029.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.78|0.94|0.72|0.78|19|378|473; (*GB) gi|225452480|ref|XP_002278629.1| (e_value=0.0) PREDICTED: protein SAMHD1 homolog [Vitis vinifera];; (*SWP) sp|B0G107|SAMH1_DICDI (e_value=3e-76) Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1;; (*TAIR) AT5G40270.1 (e_value=0.0) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc02g086900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44070513-44077345 transcript_region:SL2.40ch02:44070513..44077345+ go_terms:GO:0003824 functional_description:"Metal-dependent phosphohydrolase HD domain-containing protein (AHRD V1 **-- D7MJA0_ARALY); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00020991g0022.1 protein AED:0.20 eAED:0.20 QI:712|1|1|1|1|1|6|454|385; (*GB) gi|26454627|sp|Q07511.2|FDH_SOLTU (e_value=0.0) RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor;; (*SWP) sp|Q07511|FDH_SOLTU (e_value=0.0) Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2;; (*TAIR) AT5G14780.1 (e_value=0.0) | Symbols: FDH | formate dehydrogenase | chr5:4777043-4779190 FORWARD LENGTH=384;; (*ITAG) Solyc02g086880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44063088-44067604 transcript_region:SL2.40ch02:44063088..44067604+ go_terms:GO:0004617 functional_description:"Formate dehydrogenase (AHRD V1 **** Q5NE18_SOLLC); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0004617 NbS00038723g0003.1 protein AED:0.17 eAED:0.17 QI:314|1|1|1|0.85|0.75|8|448|490; (*GB) gi|350539531|ref|NP_001233919.1| (e_value=0.0) LAX1 protein [Solanum lycopersicum];; (*SWP) sp|Q9FEL7|LAX2_MEDTR (e_value=0.0) Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G38120.1 (e_value=0.0) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485;; (*ITAG) Solyc10g076790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59070137-59074683 transcript_region:SL2.40ch10:59070137..59074683- go_terms:GO:0010328,GO:0010011 functional_description:"Auxin transporter-like protein 1 (AHRD V1 **** B6U1Y3_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0010328,GO:0010011 NbS00008904g0014.1 protein AED:0.12 eAED:0.14 QI:913|0.8|0.72|1|0.5|0.45|11|0|490; (*GB) gi|359477374|ref|XP_002284013.2| (e_value=0.0) PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8R146|APEH_MOUSE (e_value=2e-20) Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=2;; (*TAIR) AT4G14570.1 (e_value=1e-149) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc09g083130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64201580-64208191 transcript_region:SL2.40ch09:64201580..64208191- go_terms:GO:0004252 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 *-*- D1C565_SPHTD); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00008904g0013.1 protein AED:0.21 eAED:0.22 QI:0|0.66|0.43|1|0.6|0.43|16|64|727; (*GB) gi|359477374|ref|XP_002284013.2| (e_value=2e-168) PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera];; (*SWP) sp|P13676|ACPH_RAT (e_value=8e-41) Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1;; (*TAIR) AT4G14570.1 (e_value=6e-130) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc03g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:196973-204060 transcript_region:SL2.40ch03:196973..204060- go_terms:GO:0004252 functional_description:"Prolyl endopeptidase (AHRD V1 *-** C0NUP9_AJECG); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00008904g0002.1 protein AED:0.17 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|564; (*GB) gi|255551975|ref|XP_002517032.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LS88|PP250_ARATH (e_value=4e-168) Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1;; (*TAIR) AT3G23020.1 (e_value=3e-169) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=842;; (*ITAG) Solyc09g083110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64190886-64193786 transcript_region:SL2.40ch09:64190886..64193786- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2I5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00008904g0001.1 protein AED:0.54 eAED:0.55 QI:0|1|0|1|1|1|2|0|353; (*GB) gi|297737146|emb|CBI26347.3| (e_value=4e-145) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LS88|PP250_ARATH (e_value=3e-119) Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1;; (*TAIR) AT3G23020.1 (e_value=2e-120) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8177215-8179743 REVERSE LENGTH=842;; (*ITAG) Solyc09g083110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64190886-64193786 transcript_region:SL2.40ch09:64190886..64193786- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2I5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00025503g0001.1 protein AED:0.24 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|121; (*GB) gi|359494218|ref|XP_002267511.2| (e_value=7e-42) PREDICTED: ABC transporter G family member 26-like [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=4e-27) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=3e-28) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=2e-65) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00025503g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.66|1|0|0.33|3|24|386; (*GB) gi|224097432|ref|XP_002310932.1| (e_value=3e-98) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71070.1 (e_value=7e-69) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:26807440-26809152 REVERSE LENGTH=395;; (*ITAG) Solyc02g081890.2.1 (e_value=6e-164) genomic_reference:SL2.40ch02 gene_region:40241325-40243199 transcript_region:SL2.40ch02:40241325..40243199- go_terms:GO:0016757 functional_description:"Xylosyltransferase 1 (AHRD V1 **-- B6UEF2_MAIZE); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00025503g0009.1 protein AED:0.07 eAED:0.59 QI:0|0|0|1|0|0|2|0|81 NbS00004252g0004.1 protein AED:0.11 eAED:0.11 QI:81|0.5|0.33|1|0.5|0.33|3|0|336; (*GB) gi|359497438|ref|XP_003635516.1| (e_value=8e-19) PREDICTED: uncharacterized protein LOC100853094 [Vitis vinifera];; (*ITAG) Solyc04g054900.2.1 (e_value=1e-147) genomic_reference:SL2.40ch04 gene_region:52531782-52535312 transcript_region:SL2.40ch04:52531782..52535312+ functional_description:"Genomic DNA chromosome 5 P1 clone MQN23 (AHRD V1 *-*- Q9FJQ3_ARATH)"; NbS00019321g0020.1 protein AED:0.10 eAED:0.10 QI:17|0.9|0.81|1|0.9|0.81|11|222|463; (*GB) gi|356540970|ref|XP_003538957.1| (e_value=0.0) PREDICTED: serine carboxypeptidase-like 34-like [Glycine max];; (*SWP) sp|Q0WPR4|SCP34_ARATH (e_value=0.0) Serine carboxypeptidase-like 34 OS=Arabidopsis thaliana GN=SCPL34 PE=2 SV=2;; (*TAIR) AT5G23210.1 (e_value=0.0) | Symbols: SCPL34 | serine carboxypeptidase-like 34 | chr5:7810892-7814837 FORWARD LENGTH=499;; (*ITAG) Solyc02g014830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:9830918-9835308 transcript_region:SL2.40ch02:9830918..9835308- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** A6XH04_ARATH); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00019321g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|332322086|emb|CCA65978.1| (e_value=7e-62) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=6e-13) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515;; (*ITAG) Solyc00g006170.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00019321g0023.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0.5|2|89|501; (*GB) gi|225423739|ref|XP_002277006.1| (e_value=0.0) PREDICTED: cytochrome P450 86B1 [Vitis vinifera];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=0.0) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT5G23190.1 (e_value=0.0) | Symbols: CYP86B1 | cytochrome P450, family 86, subfamily B, polypeptide 1 | chr5:7803478-7805659 REVERSE LENGTH=559;; (*ITAG) Solyc02g014730.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:9180513-9182410 transcript_region:SL2.40ch02:9180513..9182410- go_terms:GO:0008393 functional_description:"Cytochrome P450"; GO:0008393 NbS00019321g0019.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|401; (*GB) gi|359497290|ref|XP_002268807.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g49710-like [Vitis vinifera];; (*SWP) sp|Q9M2Y7|PP274_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1;; (*TAIR) AT3G49710.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18437845-18440010 FORWARD LENGTH=721;; (*ITAG) Solyc01g102690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83186277-83189733 transcript_region:SL2.40ch01:83186277..83189733+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LSX0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00019321g0025.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|301; (*GB) gi|147801369|emb|CAN74731.1| (e_value=9e-160) hypothetical protein VITISV_037837 [Vitis vinifera];; (*SWP) sp|Q9M2Y7|PP274_ARATH (e_value=9e-126) Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1;; (*TAIR) AT3G49710.1 (e_value=7e-127) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18437845-18440010 FORWARD LENGTH=721;; (*ITAG) Solyc01g102690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83186277-83189733 transcript_region:SL2.40ch01:83186277..83189733+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LSX0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00003560g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.8|1|0.75|0.8|5|0|354; (*GB) gi|224145116|ref|XP_002325532.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=9e-167) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT4G09900.1 (e_value=5e-173) | Symbols: ATMES12, MES12 | methyl esterase 12 | chr4:6221767-6223924 REVERSE LENGTH=349;; (*ITAG) Solyc06g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36827493-36832143 transcript_region:SL2.40ch06:36827493..36832143+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LXY6_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00003560g0003.1 protein AED:0.08 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|193527448|gb|ACF19789.1| (e_value=9e-16) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc06g063380.1.1 (e_value=6e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36442937-36444430 transcript_region:SL2.40ch06:36442937..36444430- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HYC2_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00003560g0009.1 protein AED:0.27 eAED:0.69 QI:0|0|0|1|0|0|3|0|107; (*ITAG) Solyc06g064880.2.1 (e_value=4e-18) genomic_reference:SL2.40ch06 gene_region:36832717-36835834 transcript_region:SL2.40ch06:36832717..36835834+ go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00003560g0007.1 protein AED:0.37 eAED:0.51 QI:0|0|0|1|0|0|3|0|86; (*ITAG) Solyc01g111490.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00035944g0008.1 protein AED:0.33 eAED:0.35 QI:0|0.4|0.5|1|0|0|6|524|180; (*ITAG) Solyc01g073870.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00035944g0002.1 protein AED:0.73 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|63 NbS00018703g0009.1 protein AED:0.04 eAED:0.04 QI:386|1|1|1|0.66|0.5|4|356|186; (*GB) gi|255582471|ref|XP_002532022.1| (e_value=1e-88) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G52910.1 (e_value=3e-75) | Symbols: | Protein of unknown function (DUF1218) | chr1:19708114-19709128 FORWARD LENGTH=175;; (*ITAG) Solyc07g063340.2.1 (e_value=7e-107) genomic_reference:SL2.40ch07 gene_region:63054493-63056714 transcript_region:SL2.40ch07:63054493..63056714- functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY3_SOLDU); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00018703g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|112 NbS00018703g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|214; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-89) hypothetical protein [Nicotiana tabacum]; NbC25564773g0005.1 protein AED:0.03 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|240; (*GB) gi|357114933|ref|XP_003559248.1| (e_value=1e-143) PREDICTED: UDP-glucose 6-dehydrogenase-like [Brachypodium distachyon];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=6e-139) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=3e-139) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc06g069550.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:39695275-39696717 transcript_region:SL2.40ch06:39695275..39696717+ go_terms:GO:0003979,GO:0009055 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 **** D2WK27_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0003979,GO:0009055 NbS00053041g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|400; (*GB) gi|224118050|ref|XP_002331545.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65456|PLY16_ARATH (e_value=0.0) Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1;; (*TAIR) AT4G22080.1 (e_value=0.0) | Symbols: RHS14 | root hair specific 14 | chr4:11700734-11702553 REVERSE LENGTH=394;; (*ITAG) Solyc02g080910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39588263-39593564 transcript_region:SL2.40ch02:39588263..39593564- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 *-** D7ME84_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00053041g0017.1 protein AED:0.23 eAED:0.26 QI:0|0.90|0.83|1|0.81|0.66|12|295|421; (*GB) gi|225444319|ref|XP_002264137.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262450 [Vitis vinifera];; (*TAIR) AT1G62305.1 (e_value=3e-152) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:23026989-23029189 REVERSE LENGTH=378;; (*ITAG) Solyc02g080970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39615682-39621976 transcript_region:SL2.40ch02:39615682..39621976- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00053041g0004.1 protein AED:0.36 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|356532131|ref|XP_003534627.1| (e_value=1e-20) PREDICTED: uncharacterized protein LOC100800556 [Glycine max];; (*TAIR) AT1G11925.1 (e_value=2e-19) | Symbols: | Stigma-specific Stig1 family protein | chr1:4026195-4026617 REVERSE LENGTH=140;; (*ITAG) Solyc02g080930.1.1 (e_value=4e-32) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39600658-39601146 transcript_region:SL2.40ch02:39600658..39601146- functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00053041g0001.1 protein AED:0.01 eAED:0.01 QI:48|1|0.5|1|0|0.5|2|0|100; (*GB) gi|302144099|emb|CBI23204.3| (e_value=5e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05070.1 (e_value=1e-34) | Symbols: | Protein of unknown function (DUF1068) | chr1:1457172-1458531 REVERSE LENGTH=184;; (*ITAG) Solyc02g080960.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39615157-39615384 transcript_region:SL2.40ch02:39615157..39615384+ functional_description:"TO62-3 (Fragment) (AHRD V1 ***- Q3LVL2_TAROF); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00053041g0021.1 protein AED:0.08 eAED:0.08 QI:138|0.5|0.66|1|0|1|3|0|319; (*GB) gi|225444293|ref|XP_002263584.1| (e_value=2e-165) PREDICTED: uncharacterized protein LOC100250418 [Vitis vinifera];; (*TAIR) AT1G11915.1 (e_value=2e-133) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4021830-4023084 FORWARD LENGTH=329;; (*ITAG) Solyc02g080900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39586431-39587905 transcript_region:SL2.40ch02:39586431..39587905+ functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 **-- Q9FGR6_ARATH)"; NbS00053041g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|4|0|604; (*GB) gi|359483391|ref|XP_003632946.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g04370-like [Vitis vinifera];; (*SWP) sp|Q9XE98|PP303_ARATH (e_value=3e-171) Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1;; (*TAIR) AT4G04370.1 (e_value=2e-172) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2134060-2136249 REVERSE LENGTH=729;; (*ITAG) Solyc02g080950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39610383-39612644 transcript_region:SL2.40ch02:39610383..39612644+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00053041g0020.1 protein AED:0.28 eAED:0.28 QI:63|0.83|0.85|1|1|1|7|378|281; (*GB) gi|359483335|ref|XP_002263767.2| (e_value=7e-137) PREDICTED: proline synthase co-transcribed bacterial homolog protein-like [Vitis vinifera];; (*SWP) sp|O94903|PROSC_HUMAN (e_value=1e-68) Proline synthase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1;; (*TAIR) AT1G11930.2 (e_value=4e-137) | Symbols: | Predicted pyridoxal phosphate-dependent enzyme, YBL036C type | chr1:4028783-4030298 FORWARD LENGTH=255;; (*ITAG) Solyc02g080940.2.1 (e_value=1e-157) genomic_reference:SL2.40ch02 gene_region:39605676-39610019 transcript_region:SL2.40ch02:39605676..39610019+ go_terms:GO:0042802,GO:0030170 functional_description:"Proline synthetase co-transcribed bacterial homolog protein (AHRD V1 **-- B5X4B5_SALSA); contains Interpro domain(s) IPR011078 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "; GO:0042802,GO:0030170 NbS00053041g0024.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|224118058|ref|XP_002331547.1| (e_value=6e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11925.1 (e_value=7e-32) | Symbols: | Stigma-specific Stig1 family protein | chr1:4026195-4026617 REVERSE LENGTH=140;; (*ITAG) Solyc02g036240.1.1 (e_value=7e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:21096710-21097123 transcript_region:SL2.40ch02:21096710..21097123- functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00010406g0006.1 protein AED:0.59 eAED:0.59 QI:0|0.2|0|0.5|1|1|6|0|122; (*GB) gi|363808240|ref|NP_001242491.1| (e_value=3e-16) uncharacterized protein LOC100786583 [Glycine max];; (*TAIR) AT4G26965.2 (e_value=1e-16) | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr4:13539832-13542041 FORWARD LENGTH=147;; (*ITAG) Solyc07g064640.2.1 (e_value=4e-24) genomic_reference:SL2.40ch07 gene_region:63923239-63927583 transcript_region:SL2.40ch07:63923239..63927583- go_terms:GO:0016020 functional_description:"NADH ubiquinone oxidoreductase family protein (AHRD V1 **-- D7MEK6_ARALY); contains Interpro domain(s) IPR007763 NADH:ubiquinone oxidoreductase, 17.2 kD subunit "; GO:0016020 NbS00001713g0001.1 protein AED:0.29 eAED:0.29 QI:18|1|1|1|1|1|3|227|122; (*GB) gi|225455764|ref|XP_002269953.1| (e_value=8e-66) PREDICTED: uncharacterized protein LOC100255926 [Vitis vinifera];; (*TAIR) AT3G01435.1 (e_value=3e-61) | Symbols: | Expressed protein | chr3:166853-167984 REVERSE LENGTH=115;; (*ITAG) Solyc04g014700.2.1 (e_value=9e-63) genomic_reference:SL2.40ch04 gene_region:4961928-4964016 transcript_region:SL2.40ch04:4961928..4964016- go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019404 Mediator complex, subunit Med11 "; GO:0016592 NbS00001713g0003.1 protein AED:0.45 eAED:0.57 QI:0|0|0|0.66|1|1|3|0|81 NbS00001713g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|179|429; (*GB) gi|255554735|ref|XP_002518405.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=0.0) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=0.0) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc04g014690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4951177-4954530 transcript_region:SL2.40ch04:4951177..4954530+ go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q2HTT4_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00038237g0112.1 protein AED:0.26 eAED:0.26 QI:0|0.4|0.33|0.83|0.4|0.16|6|292|332 NbS00038237g0110.1 protein AED:0.20 eAED:0.20 QI:189|0.86|0.93|1|0.8|0.81|16|397|477 NbS00043100g0004.1 protein AED:0.01 eAED:0.01 QI:62|1|1|1|0.66|0.75|4|148|264; (*GB) gi|297740473|emb|CBI30655.3| (e_value=6e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=3e-87) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.2 (e_value=2e-88) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285;; (*ITAG) Solyc10g008760.2.1 (e_value=2e-137) genomic_reference:SL2.40ch10 gene_region:2830967-2833275 transcript_region:SL2.40ch10:2830967..2833275- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00052941g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|815; (*GB) gi|225468025|ref|XP_002271577.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Vitis vinifera];; (*SWP) sp|C0LGK9|Y2242_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1;; (*TAIR) AT2G24230.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:10301979-10304540 REVERSE LENGTH=853;; (*ITAG) Solyc07g005540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:436097-438664 transcript_region:SL2.40ch07:436097..438664+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00033646g0012.1 protein AED:0.22 eAED:0.22 QI:16|0.8|0.72|0.90|0.9|0.90|11|0|205; (*GB) gi|350539998|ref|NP_001233837.1| (e_value=1e-126) inositol monophosphatase 3 [Solanum lycopersicum];; (*SWP) sp|P54928|IMP3_SOLLC (e_value=4e-128) Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1;; (*TAIR) AT3G02870.1 (e_value=3e-103) | Symbols: VTC4 | Inositol monophosphatase family protein | chr3:627742-629682 REVERSE LENGTH=271;; (*ITAG) Solyc11g012410.1.1 (e_value=3e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5242451-5246401 transcript_region:SL2.40ch11:5242451..5246401+ go_terms:GO:0004437 functional_description:"Inositol monophosphatase 3 (AHRD V1 ***- B6TEX0_MAIZE); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0004437 NbS00033646g0001.1 protein AED:0.31 eAED:0.31 QI:0|1|0.9|1|1|1|10|259|300; (*GB) gi|225469268|ref|XP_002267661.1| (e_value=0.0) PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=0.0) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=0.0) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc11g012400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5232807-5238814 transcript_region:SL2.40ch11:5232807..5238814+ go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00033646g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|401; (*GB) gi|255581601|ref|XP_002531605.1| (e_value=1e-150) dopamine beta-monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=2e-25) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=6e-146) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc11g012420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5262685-5264885 transcript_region:SL2.40ch11:5262685..5264885- functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00001988g0021.1 protein AED:0.17 eAED:0.17 QI:40|1|1|1|0.66|0.5|4|176|116; (*GB) gi|48209878|gb|AAT40484.1| (e_value=3e-67) putative Myb-like DNA-binding protein [Solanum demissum];; (*TAIR) AT1G14350.2 (e_value=2e-33) | Symbols: FLP, MYB124 | Duplicated homeodomain-like superfamily protein | chr1:4908427-4910647 FORWARD LENGTH=436;; (*ITAG) Solyc05g007160.2.1 (e_value=8e-70) genomic_reference:SL2.40ch05 gene_region:1752928-1757049 transcript_region:SL2.40ch05:1752928..1757049- go_terms:GO:0003700 functional_description:"Transcription factor C-MYB (AHRD V1 *-** Q766Z9_ORYLA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00001988g0008.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|86; (*GB) gi|78102606|ref|YP_358745.1| (e_value=4e-27) hypothetical protein NisyCp102 [Nicotiana sylvestris];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=1e-28) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021310.1.1 (e_value=8e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00001988g0016.1 protein AED:0.21 eAED:0.21 QI:82|0.66|0.57|1|0.66|0.71|7|0|389; (*GB) gi|122230824|sp|Q10PP8.1|MTP4_ORYSJ (e_value=0.0) RecName: Full=Metal tolerance protein 4; Short=OsMTP4;; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=0.0) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=4e-171) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc03g052990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19544673-19547281 transcript_region:SL2.40ch03:19544673..19547281+ go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 **-- FIEF_CITK8); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00001988g0014.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|97; (*GB) gi|313664501|gb|ADR72572.1| (e_value=1e-23) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Solanum dulcamara];; (*SWP) sp|Q31672|RBL_ANTLU (e_value=1e-25) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Antirhea lucida GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=3e-25) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=4e-26) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00001988g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.83|1|1|1|6|0|610; (*GB) gi|225441549|ref|XP_002281113.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q84W89|RH37_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2;; (*TAIR) AT2G42520.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633;; (*ITAG) Solyc03g052980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19499079-19506399 transcript_region:SL2.40ch03:19499079..19506399- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00001988g0019.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|410; (*GB) gi|297739790|emb|CBI29972.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G58520.1 (e_value=4e-173) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr3:21643921-21645277 REVERSE LENGTH=418;; (*ITAG) Solyc01g105040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85090588-85092408 transcript_region:SL2.40ch01:85090588..85092408- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00026539g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|135; (*GB) gi|257831447|gb|ACV71024.1| (e_value=3e-68) UPA25 [Capsicum annuum];; (*SWP) sp|Q9T068|EPFL2_ARATH (e_value=4e-25) EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1;; (*TAIR) AT4G37810.1 (e_value=3e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128;; (*ITAG) Solyc04g077170.2.1 (e_value=4e-66) genomic_reference:SL2.40ch04 gene_region:59687124-59688129 transcript_region:SL2.40ch04:59687124..59688129- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 2 (AHRD V1 ***- EPFL2_ARATH)"; NbS00010057g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|380; (*GB) gi|225467702|ref|XP_002272171.1| (e_value=4e-118) PREDICTED: uncharacterized protein LOC100251038 isoform 1 [Vitis vinifera];; (*TAIR) AT3G07310.1 (e_value=3e-108) | Symbols: | Protein of unknown function (DUF760) | chr3:2328057-2329677 REVERSE LENGTH=368;; (*ITAG) Solyc06g007560.1.1 (e_value=6e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1561713-1563890 transcript_region:SL2.40ch06:1561713..1563890- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q010E1_OSTTA); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00013518g0005.1 protein AED:0.22 eAED:0.23 QI:30|0.66|0.61|1|0.33|0.30|13|601|309; (*GB) gi|225435171|ref|XP_002281874.1| (e_value=2e-125) PREDICTED: DNA repair protein RAD51 homolog 2-like [Vitis vinifera];; (*SWP) sp|Q9SK02|RA51B_ARATH (e_value=6e-117) DNA repair protein RAD51 homolog 2 OS=Arabidopsis thaliana GN=RAD51B PE=2 SV=2;; (*TAIR) AT2G28560.2 (e_value=5e-118) | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family protein | chr2:12236876-12239086 REVERSE LENGTH=370;; (*ITAG) Solyc11g072610.1.1 (e_value=5e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52911688-52921096 transcript_region:SL2.40ch11:52911688..52921096- go_terms:GO:0006259,GO:0017111 functional_description:"DNA recombination and repair protein (AHRD V1 ***- Q3LW29_BIGNA); contains Interpro domain(s) IPR016467 DNA repair and recombination, RecA-like "; GO:0006259,GO:0017111 NbS00015463g0001.1 protein AED:0.27 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|112; (*ITAG) Solyc10g084070.1.1 (e_value=6e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014495g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|1|1|3|0|428; (*GB) gi|520958|emb|CAA81749.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum];; (*SWP) sp|Q9STR4|1A17_ARATH (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1;; (*TAIR) AT4G26200.1 (e_value=0.0) | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate synthase 7 | chr4:13275307-13276946 FORWARD LENGTH=447;; (*ITAG) Solyc07g026900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:32131840-32133366 transcript_region:SL2.40ch07:32131840..32133366+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q43167_SOLTU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803,GO:0016847 NbS00018131g0017.1 protein AED:0.14 eAED:0.19 QI:0|0.2|0|0.83|0.6|0.5|6|0|301; (*ITAG) Solyc01g094420.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00018131g0015.1 protein AED:0.29 eAED:0.35 QI:155|0.16|0.14|1|0.16|0.28|7|0|358; (*GB) gi|356520448|ref|XP_003528874.1| (e_value=2e-116) PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Glycine max];; (*TAIR) AT4G00560.4 (e_value=2e-104) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:240798-242267 REVERSE LENGTH=331;; (*ITAG) Solyc01g094190.2.1 (e_value=1e-165) genomic_reference:SL2.40ch01 gene_region:77513558-77517921 transcript_region:SL2.40ch01:77513558..77517921+ go_terms:GO:0045226,GO:0008152 functional_description:"dTDP-4-dehydrorhamnose reductase (AHRD V1 ***- D7VML6_9SPHI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0045226,GO:0008152 NbS00018131g0019.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|0.8|0.5|0.6|5|391|505; (*GB) gi|75120871|sp|Q6DW73.1|DGDG2_LOTJA (e_value=0.0) RecName: Full=Digalactosyldiacylglycerol synthase 2, chloroplastic;; (*SWP) sp|Q6DW73|DGDG2_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=0.0) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc01g094170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77502185-77507721 transcript_region:SL2.40ch01:77502185..77507721- go_terms:GO:0035250,GO:0046480 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250,GO:0046480 NbS00018131g0014.1 protein AED:0.46 eAED:0.54 QI:3|0|0|1|0|0|2|0|36 NbS00011272g0012.1 protein AED:0.12 eAED:0.14 QI:0|0.8|0.5|1|0.6|0.83|6|0|580; (*GB) gi|255555773|ref|XP_002518922.1| (e_value=5e-119) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01110.2 (e_value=1e-94) | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54494 FORWARD LENGTH=527;; (*ITAG) Solyc08g083240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62923263-62925544 transcript_region:SL2.40ch08:62923263..62925544- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00011272g0015.1 protein AED:0.02 eAED:0.07 QI:0|0|0|1|1|1|4|0|468; (*GB) gi|255555771|ref|XP_002518921.1| (e_value=9e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24150.1 (e_value=3e-26) | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 | chr4:12535972-12539387 FORWARD LENGTH=493;; (*ITAG) Solyc08g083230.1.1 (e_value=8e-154) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:62919957-62921404 transcript_region:SL2.40ch08:62919957..62921404+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 3 (AHRD V1 *--- Q6AWY6_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00011272g0016.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|1|1|2|0|331; (*GB) gi|255555769|ref|XP_002518920.1| (e_value=4e-96) hypothetical protein RCOM_1313640 [Ricinus communis];; (*TAIR) AT1G64690.1 (e_value=2e-44) | Symbols: BLT | branchless trichome | chr1:24038069-24038890 FORWARD LENGTH=273;; (*ITAG) Solyc08g083220.1.1 (e_value=1e-96) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62915588-62916346 transcript_region:SL2.40ch08:62915588..62916346+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005363g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|112; (*ITAG) Solyc09g075810.2.1 (e_value=6e-15) genomic_reference:SL2.40ch09 gene_region:62927206-62929236 transcript_region:SL2.40ch09:62927206..62929236- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00005363g0008.1 protein AED:0.23 eAED:0.23 QI:929|1|0.75|1|0.85|0.87|8|0|500; (*GB) gi|297738774|emb|CBI28019.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G44970.2 (e_value=1e-163) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18548999-18552019 REVERSE LENGTH=502;; (*ITAG) Solyc05g018210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20210742-20216936 transcript_region:SL2.40ch05:20210742..20216936- functional_description:"Os11g0109966 protein (Fragment) (AHRD V1 *-*- C7J8E6_ORYSJ)"; NbS00034539g0007.1 protein AED:0.28 eAED:0.28 QI:245|1|0.92|1|1|1|13|417|555; (*GB) gi|75338883|sp|Q9ZR39.1|U2A2A_NICPL (e_value=0.0) RecName: Full=Splicing factor U2af large subunit A; AltName: Full=NpU2AF65a; AltName: Full=U2 auxiliary factor 65 kDa subunit A; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit A; Short=U2 snRNP auxiliary factor large subunit A;; (*SWP) sp|Q9ZR39|U2A2A_NICPL (e_value=0.0) Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1;; (*TAIR) AT4G36690.1 (e_value=0.0) | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294139-17297609 REVERSE LENGTH=573;; (*ITAG) Solyc02g085570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42978856-42984886 transcript_region:SL2.40ch02:42978856..42984886+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00053087g0004.1 protein AED:0.16 eAED:0.17 QI:258|0.93|0.88|1|0.87|0.88|17|227|1677; (*GB) gi|297736745|emb|CBI25946.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55FJ0|LVSG_DICDI (e_value=9e-65) Probable inactive serine/threonine-protein kinase lvsG OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1;; (*TAIR) AT5G18525.1 (e_value=0.0) | Symbols: | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases | chr5:6146932-6153658 REVERSE LENGTH=1639;; (*ITAG) Solyc12g099010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64662179-64670542 transcript_region:SL2.40ch12:64662179..64670542- go_terms:GO:0006468 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A2EN39_TRIVA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0006468 NbS00008107g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|443; (*GB) gi|6683050|dbj|BAA89008.1| (e_value=0.0) anthocyanidin 3-O-glucosyltransferase [Petunia x hybrida];; (*SWP) sp|Q43641|UFOG_SOLME (e_value=0.0) Anthocyanidin 3-O-glucosyltransferase OS=Solanum melongena GN=GT PE=2 SV=1;; (*TAIR) AT5G17050.1 (e_value=4e-144) | Symbols: UGT78D2 | UDP-glucosyl transferase 78D2 | chr5:5607828-5609392 REVERSE LENGTH=460;; (*ITAG) Solyc10g083440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62568900-62570243 transcript_region:SL2.40ch10:62568900..62570243+ go_terms:GO:0080043 functional_description:"UDP flavonoid 3-O-glucosyltransferase (Fragment) (AHRD V1 **** B5AIT4_IPOTF); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00033545g0013.1 protein AED:0.15 eAED:0.17 QI:0|0.87|0.77|1|0.5|0.44|9|497|526; (*GB) gi|225462928|ref|XP_002265858.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-86) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G14020.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:4802930-4805111 FORWARD LENGTH=499;; (*ITAG) Solyc05g013140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6230026-6235354 transcript_region:SL2.40ch05:6230026..6235354+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00033545g0007.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|1|1|3|0|85 NbS00033545g0010.1 protein AED:0.14 eAED:0.13 QI:0|0.8|0.66|1|1|1|6|682|494; (*GB) gi|17368377|sp|P94026.1|RBCMT_TOBAC (e_value=0.0) RecName: Full=Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic; AltName: Full=[Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase; Short=RuBisCO LSMT; Short=RuBisCO methyltransferase; Short=rbcMT; Flags: Precursor;; (*SWP) sp|P94026|RBCMT_TOBAC (e_value=0.0) Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1;; (*TAIR) AT1G14030.1 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr1:4805493-4807440 REVERSE LENGTH=482;; (*ITAG) Solyc05g013160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6244912-6248098 transcript_region:SL2.40ch05:6244912..6248098+ go_terms:GO:0009507 functional_description:"Set domain protein (AHRD V1 ***- C1EFC8_9CHLO); contains Interpro domain(s) IPR011192 Rubisco methyltransferase "; GO:0009507 NbS00033545g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|147844669|emb|CAN80057.1| (e_value=2e-26) hypothetical protein VITISV_023146 [Vitis vinifera];; (*TAIR) AT1G14060.1 (e_value=1e-23) | Symbols: | GCK domain-containing protein | chr1:4817354-4817893 REVERSE LENGTH=179;; (*ITAG) Solyc05g013170.2.1 (e_value=7e-32) genomic_reference:SL2.40ch05 gene_region:6254353-6256562 transcript_region:SL2.40ch05:6254353..6256562- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012891 GCK "; NbS00035139g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.6|1|1|1|5|0|426; (*GB) gi|225434137|ref|XP_002274786.1| (e_value=0.0) PREDICTED: ion channel CASTOR-like [Vitis vinifera];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=9e-179) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=1e-137) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc10g044890.1.1 (e_value=3e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24351349-24359299 transcript_region:SL2.40ch10:24351349..24359299+ go_terms:GO:0008152 functional_description:"DMI1 protein (Fragment) (AHRD V1 *-*- A9DNI2_MEDTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00018122g0001.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|356508993|ref|XP_003523237.1| (e_value=3e-12) PREDICTED: protein MKS1-like [Glycine max];; (*ITAG) Solyc11g005720.1.1 (e_value=3e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:572324-573019 transcript_region:SL2.40ch11:572324..573019- functional_description:"VQ motif family protein (AHRD V1 ***- B6SZE5_MAIZE); contains Interpro domain(s) IPR008889 VQ "; NbS00018122g0003.1 protein AED:0.29 eAED:0.59 QI:0|0|0|0.66|1|1|3|0|98 NbS00018122g0008.1 protein AED:0.24 eAED:0.64 QI:0|0|0|1|0|0.33|3|0|369; (*GB) gi|113205171|gb|AAT40519.2| (e_value=4e-13) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc07g064380.2.1 (e_value=4e-24) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00039934g0007.1 protein AED:0.20 eAED:0.17 QI:87|0.84|0.78|0.92|0.61|0.57|14|0|752; (*GB) gi|255563064|ref|XP_002522536.1| (e_value=7e-24) hypothetical protein RCOM_1013810 [Ricinus communis];; (*ITAG) Solyc02g077210.1.1 (e_value=7e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36777874-36780553 transcript_region:SL2.40ch02:36777874..36780553+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022703g0009.1 protein AED:0.18 eAED:0.18 QI:156|0.8|0.83|1|0.6|0.66|6|295|124; (*GB) gi|351727683|ref|NP_001237937.1| (e_value=5e-74) uncharacterized protein LOC100499661 [Glycine max];; (*SWP) sp|Q9D7M8|RPB4_MOUSE (e_value=6e-22) DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2;; (*TAIR) AT5G09920.1 (e_value=4e-74) | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096276-3097370 FORWARD LENGTH=138;; (*ITAG) Solyc06g073870.2.1 (e_value=5e-79) genomic_reference:SL2.40ch06 gene_region:42002858-42005584 transcript_region:SL2.40ch06:42002858..42005584- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit RPB4 (AHRD V1 **** B9EP00_SALSA); contains Interpro domain(s) IPR006590 RNA polymerase II, Rpb4, core "; GO:0003899 NbS00022703g0002.1 protein AED:0.27 eAED:0.30 QI:230|0.66|0.71|1|0.83|0.85|7|0|347; (*GB) gi|222159969|gb|ACM47318.1| (e_value=1e-94) putative zinc ion binding protein [Capsicum annuum];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=3e-65) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=2e-66) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc06g073860.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41998917-42000551 transcript_region:SL2.40ch06:41998917..42000551+ functional_description:"RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI)"; NbS00045937g0006.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0.46|1|0.75|0.69|13|713|932; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.1 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44210946-44216059 transcript_region:SL2.40ch12:44210946..44216059- go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00037866g0001.1 protein AED:0.19 eAED:0.19 QI:437|0.81|0.75|1|0.81|0.83|12|129|616; (*GB) gi|356530808|ref|XP_003533972.1| (e_value=0.0) PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max];; (*SWP) sp|Q9T050|SPXM2_ARATH (e_value=0.0) SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1;; (*TAIR) AT4G11810.1 (e_value=0.0) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:7105446-7108450 FORWARD LENGTH=707;; (*ITAG) Solyc08g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2311212-2317511 transcript_region:SL2.40ch08:2311212..2317511- go_terms:GO:0055085 functional_description:"Transporter major facilitator family (AHRD V1 *--- B1EKR1_9ESCH); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00054676g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|255565148|ref|XP_002523566.1| (e_value=4e-38) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g065010.1.1 (e_value=3e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30708646-30708945 transcript_region:SL2.40ch02:30708646..30708945+ go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 ***- B6UAJ2_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00054676g0004.1 protein AED:0.34 eAED:0.34 QI:67|-1|0|1|-1|0|1|0|153; (*GB) gi|224094366|ref|XP_002310148.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQE6|CML1_ARATH (e_value=3e-47) Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1;; (*TAIR) AT2G15680.1 (e_value=2e-48) | Symbols: | Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187;; (*ITAG) Solyc02g065000.1.1 (e_value=3e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30706851-30707372 transcript_region:SL2.40ch02:30706851..30707372+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028918g0015.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|0.5|0.33|3|0|76 NbS00028918g0013.1 protein AED:0.36 eAED:0.36 QI:11|0.87|0.77|1|0.87|0.77|9|0|387; (*GB) gi|255571887|ref|XP_002526886.1| (e_value=8e-174) metalloendopeptidase, putative [Ricinus communis];; (*TAIR) AT5G05740.3 (e_value=1e-167) | Symbols: EGY2 | ethylene-dependent gravitropism-deficient and yellow-green-like 2 | chr5:1724023-1726859 REVERSE LENGTH=524;; (*ITAG) Solyc06g019200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:14497192-14501561 transcript_region:SL2.40ch06:14497192..14501561- go_terms:GO:0006508 functional_description:"Peptidase M50 family protein (AHRD V1 ***- D7LZ04_ARALY); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00028918g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0.6|1|0.75|0.8|5|71|292; (*GB) gi|255571877|ref|XP_002526881.1| (e_value=2e-23) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g030530.2.1 (e_value=5e-34) genomic_reference:SL2.40ch06 gene_region:16057617-16063422 transcript_region:SL2.40ch06:16057617..16063422- functional_description:"Unknown Protein (AHRD V1)"; NbS00001260g0009.1 protein AED:0.07 eAED:0.07 QI:498|1|1|1|0.81|0.82|17|434|714; (*GB) gi|225441621|ref|XP_002281952.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267624 [Vitis vinifera];; (*SWP) sp|P42168|KC1A_CAEEL (e_value=9e-57) Casein kinase I isoform alpha OS=Caenorhabditis elegans GN=kin-19 PE=2 SV=1;; (*TAIR) AT3G03940.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr3:1014412-1018244 REVERSE LENGTH=701;; (*ITAG) Solyc10g080700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001260g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|1|1|7|0|598; (*GB) gi|359484512|ref|XP_003633115.1| (e_value=0.0) PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Vitis vinifera];; (*SWP) sp|Q9SW96|SYNC1_ARATH (e_value=0.0) Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1;; (*TAIR) AT5G56680.1 (e_value=0.0) | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr5:22936645-22938841 FORWARD LENGTH=572;; (*ITAG) Solyc10g080710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61247846-61251817 transcript_region:SL2.40ch10:61247846..61251817- go_terms:GO:0005515,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase 2 (AHRD V1 **** D7L6K3_ARALY); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb "; GO:0005515,GO:0004816 NbS00001260g0013.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|518; (*GB) gi|224136644|ref|XP_002322380.1| (e_value=2e-150) predicted protein [Populus trichocarpa];; (*TAIR) AT3G54950.1 (e_value=8e-100) | Symbols: PLP7, PLA IIIA | patatin-like protein 6 | chr3:20359076-20360774 REVERSE LENGTH=488;; (*ITAG) Solyc10g080690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61232835-61234738 transcript_region:SL2.40ch10:61232835..61234738+ go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00016904g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|224096972|ref|XP_002310804.1| (e_value=6e-76) predicted protein [Populus trichocarpa];; (*TAIR) AT5G49560.1 (e_value=2e-73) | Symbols: | Putative methyltransferase family protein | chr5:20110961-20111785 REVERSE LENGTH=274;; (*ITAG) Solyc02g085210.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42758702-42759487 transcript_region:SL2.40ch02:42758702..42759487+ functional_description:"UPF0567 protein C13orf39 homolog (AHRD V1 *--- CM039_MOUSE); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00016904g0011.1 protein AED:0.09 eAED:0.24 QI:0|0.25|0.2|1|0.25|0.4|5|0|352; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=2e-84) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=2e-69) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=2e-61) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g085130.2.1 (e_value=7e-98) genomic_reference:SL2.40ch02 gene_region:42689477-42691624 transcript_region:SL2.40ch02:42689477..42691624+ go_terms:GO:0051015 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0051015 NbS00016904g0007.1 protein AED:0.23 eAED:0.23 QI:66|0.8|0.81|1|0.8|0.81|11|473|969; (*GB) gi|225430766|ref|XP_002267514.1| (e_value=0.0) PREDICTED: vam6/Vps39-like protein [Vitis vinifera];; (*SWP) sp|Q96JC1|VPS39_HUMAN (e_value=5e-41) Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2;; (*TAIR) AT4G36630.1 (e_value=0.0) | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000;; (*ITAG) Solyc07g056660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61781736-61792185 transcript_region:SL2.40ch07:61781736..61792185+ go_terms:GO:0046332,GO:0005160 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 *--* TGFA1_HUMAN); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0046332,GO:0005160 NbC26300154g0004.1 protein AED:0.41 eAED:0.43 QI:16|0.66|0.5|1|0.66|0.75|4|0|176; (*GB) gi|225463572|ref|XP_002270172.1| (e_value=1e-72) PREDICTED: F-box/LRR-repeat protein 14 [Vitis vinifera];; (*TAIR) AT1G15740.1 (e_value=3e-63) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc03g117420.2.1 (e_value=3e-94) genomic_reference:SL2.40ch03 gene_region:60607772-60622320 transcript_region:SL2.40ch03:60607772..60622320- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 ***- D7KDI8_ARALY); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515 NbS00026286g0016.1 protein AED:0.32 eAED:0.34 QI:0|0.55|0.4|1|0.77|0.8|10|0|587; (*GB) gi|296081168|emb|CBI18194.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A0AUR5|F188A_DANRE (e_value=3e-42) Protein FAM188A OS=Danio rerio GN=fam188a PE=2 SV=1;; (*TAIR) AT1G43690.1 (e_value=0.0) | Symbols: | ubiquitin interaction motif-containing protein | chr1:16478519-16482589 FORWARD LENGTH=599;; (*ITAG) Solyc04g071320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55840139-55850060 transcript_region:SL2.40ch04:55840139..55850060- functional_description:"Protein FAM188A (AHRD V1 **-- F188A_BOVIN); contains Interpro domain(s) IPR003903 Ubiquitin interacting motif "; NbS00026286g0015.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|178; (*GB) gi|156350379|ref|XP_001622258.1| (e_value=8e-77) predicted protein [Nematostella vectensis];; (*SWP) sp|P68428|H32_WHEAT (e_value=4e-72) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=3e-73) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00035471g0005.1 protein AED:0.32 eAED:0.32 QI:106|0.63|0.75|0.83|0.45|0.5|12|425|316; (*GB) gi|224089442|ref|XP_002308721.1| (e_value=8e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVR6|Y1222_ARATH (e_value=9e-42) Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1;; (*TAIR) AT5G10730.1 (e_value=1e-126) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3390822-3392947 REVERSE LENGTH=287;; (*ITAG) Solyc08g006510.2.1 (e_value=2e-149) genomic_reference:SL2.40ch08 gene_region:1108336-1124190 transcript_region:SL2.40ch08:1108336..1124190- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B6TVJ7_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00046785g0004.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|158; (*ITAG) Solyc02g093660.1.1 (e_value=6e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00046785g0008.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|95; (*ITAG) Solyc02g093660.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00046785g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|3|0|276; (*ITAG) Solyc09g059560.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50448836-50449258 transcript_region:SL2.40ch09:50448836..50449258+ go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00025131g0012.1 protein AED:0.07 eAED:0.07 QI:219|0.87|0.88|1|0.56|0.58|17|141|1457; (*GB) gi|147781088|emb|CAN74785.1| (e_value=0.0) hypothetical protein VITISV_011516 [Vitis vinifera];; (*SWP) sp|D1FP53|LIN_MEDTR (e_value=0.0) Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1;; (*TAIR) AT3G06880.2 (e_value=6e-36) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264;; (*ITAG) Solyc04g057940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54202068-54208234 transcript_region:SL2.40ch04:54202068..54208234+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- B6V8G2_HELAN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005488,GO:0000151 NbS00025131g0009.1 protein AED:0.16 eAED:0.16 QI:136|1|0.9|1|1|1|10|0|774; (*GB) gi|255558560|ref|XP_002520305.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=9e-74) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT1G77280.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr1:29031468-29035882 REVERSE LENGTH=794;; (*ITAG) Solyc04g057930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54193911-54198180 transcript_region:SL2.40ch04:54193911..54198180+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00033114g0007.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|153; (*GB) gi|359806777|ref|NP_001241303.1| (e_value=7e-83) uncharacterized protein LOC100786369 [Glycine max];; (*SWP) sp|Q9LJ98|PFD2_ARATH (e_value=6e-62) Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1;; (*TAIR) AT3G22480.1 (e_value=4e-63) | Symbols: PDF2 | prefoldin 2 | chr3:7969080-7969526 FORWARD LENGTH=148;; (*ITAG) Solyc06g053460.1.1 (e_value=1e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32755120-32755491 transcript_region:SL2.40ch06:32755120..32755491+ go_terms:GO:0015631 functional_description:"Prefoldin subunit 2 (AHRD V1 ***- B6TMM5_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631 NbS00033114g0006.1 protein AED:0.10 eAED:0.10 QI:234|1|1|1|1|1|5|330|163; (*GB) gi|225432138|ref|XP_002274678.1| (e_value=7e-59) PREDICTED: uncharacterized protein LOC100244351 [Vitis vinifera];; (*TAIR) AT1G48170.1 (e_value=8e-61) | Symbols: | unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17788810-17789635 FORWARD LENGTH=153;; (*ITAG) Solyc06g053470.2.1 (e_value=1e-83) genomic_reference:SL2.40ch06 gene_region:32755953-32758748 transcript_region:SL2.40ch06:32755953..32758748- functional_description:"Os12g0182800 protein (Fragment) (AHRD V1 *-*- Q0IPM3_ORYSJ)"; NbS00006480g0003.1 protein AED:0.27 eAED:0.27 QI:475|1|0.66|1|0.5|0|3|0|181; (*GB) gi|255569920|ref|XP_002525923.1| (e_value=8e-66) 60S ribosomal protein L7a, putative [Ricinus communis];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=6e-38) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G15790.2 (e_value=3e-43) | Symbols: | RING/U-box superfamily protein | chr5:5149800-5150964 FORWARD LENGTH=232;; (*ITAG) Solyc02g089240.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:45681209-45686565 transcript_region:SL2.40ch02:45681209..45686565- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005497g0002.1 protein AED:0.13 eAED:0.13 QI:672|0.94|0.95|1|0.52|0.55|20|1033|420; (*GB) gi|225441242|ref|XP_002267245.1| (e_value=0.0) PREDICTED: nucleolar protein 10 [Vitis vinifera];; (*SWP) sp|Q7T0Q5|NOL10_XENLA (e_value=2e-100) Nucleolar protein 10 OS=Xenopus laevis GN=nol10 PE=2 SV=1;; (*TAIR) AT3G56990.1 (e_value=1e-175) | Symbols: EDA7 | embryo sac development arrest 7 | chr3:21088358-21091976 REVERSE LENGTH=711;; (*ITAG) Solyc10g085580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64023741-64035339 transcript_region:SL2.40ch10:64023741..64035339+ go_terms:GO:0005634 functional_description:"Nucleolar protein 10 (AHRD V1 **-- B6UCL1_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005634 NbS00047275g0004.1 protein AED:0.24 eAED:0.24 QI:148|1|1|1|1|1|3|350|151; (*GB) gi|146220098|gb|ABQ11263.1| (e_value=2e-108) mago nashi-like protein 2 [Physalis pubescens];; (*SWP) sp|P49030|MGN_ORYSJ (e_value=1e-99) Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2;; (*TAIR) AT1G02140.1 (e_value=2e-97) | Symbols: MEE63, MAGO, HAP1 | mago nashi family protein | chr1:403467-404401 REVERSE LENGTH=150;; (*ITAG) Solyc03g093680.2.1 (e_value=5e-111) genomic_reference:SL2.40ch03 gene_region:48763706-48768132 transcript_region:SL2.40ch03:48763706..48768132+ go_terms:GO:0032183 functional_description:"Mago nashi-like protein 2 (AHRD V1 ***- A5H9J2_9SOLA); contains Interpro domain(s) IPR004023 Mago nashi protein "; GO:0032183 NbS00000128g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|972|336; (*GB) gi|147822811|emb|CAN66006.1| (e_value=3e-124) hypothetical protein VITISV_042886 [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=7e-112) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=5e-113) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc04g009850.2.1 (e_value=3e-171) genomic_reference:SL2.40ch04 gene_region:3167860-3170633 transcript_region:SL2.40ch04:3167860..3170633- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00023048g0001.1 protein AED:0.35 eAED:0.35 QI:1175|0.7|0.54|0.90|0.9|0.81|11|0|350; (*GB) gi|225461477|ref|XP_002282453.1| (e_value=3e-113) PREDICTED: putative RNA-binding protein ylmH [Vitis vinifera];; (*SWP) sp|P71020|YLMH_BACSU (e_value=2e-13) Putative RNA-binding protein ylmH OS=Bacillus subtilis (strain 168) GN=ylmH PE=4 SV=1;; (*TAIR) AT1G53120.1 (e_value=4e-113) | Symbols: | RNA-binding S4 domain-containing protein | chr1:19792798-19794605 FORWARD LENGTH=320;; (*ITAG) Solyc12g013870.1.1 (e_value=2e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4655976-4664119 transcript_region:SL2.40ch12:4655976..4664119+ go_terms:GO:0003723 functional_description:"RNA-binding S4 domain protein (AHRD V1 ***- B2IVN0_NOSP7); contains Interpro domain(s) IPR017506 Photosystem II S4 domain protein "; GO:0003723 NbS00023048g0002.1 protein AED:0.46 eAED:0.64 QI:270|0|0|1|1|1|4|0|131 NbS00038681g0005.1 protein AED:0.30 eAED:0.30 QI:3|1|0.83|1|1|1|12|0|440; (*GB) gi|225448900|ref|XP_002264719.1| (e_value=0.0) PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=3e-137) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT5G04420.3 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:1246867-1249455 REVERSE LENGTH=514;; (*ITAG) Solyc11g007960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2181483-2185661 transcript_region:SL2.40ch11:2181483..2185661+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 3 (AHRD V1 **-- D3PFJ0_9MAXI); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00038681g0007.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-27) hypothetical protein [Nicotiana tabacum]; NbS00055888g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=8e-37) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00002024g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|241; (*GB) gi|3065895|gb|AAC14323.1| (e_value=1e-69) TSI1 [Nicotiana tabacum];; (*SWP) sp|O04682|PTI6_SOLLC (e_value=4e-67) Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1;; (*TAIR) AT4G27950.1 (e_value=1e-34) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g082590.1.1 (e_value=2e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44653700-44654446 transcript_region:SL2.40ch06:44653700..44654446- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR017392 Pathogenesis-related genes transcriptional activator PTI6 "; GO:0003677,GO:0006355 NbS00002024g0010.1 protein AED:0.11 eAED:0.11 QI:361|1|0.66|1|1|0.66|3|357|629; (*GB) gi|359478866|ref|XP_002276162.2| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g58300 [Vitis vinifera];; (*SWP) sp|Q9C9Y8|Y3868_ARATH (e_value=0.0) Probable inactive receptor kinase At3g08680 OS=Arabidopsis thaliana GN=At3g08680 PE=1 SV=1;; (*TAIR) AT3G08680.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:2638591-2640590 FORWARD LENGTH=640;; (*ITAG) Solyc06g082610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44662023-44664895 transcript_region:SL2.40ch06:44662023..44664895- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00002024g0011.1 protein AED:0.35 eAED:0.35 QI:0|0.2|0|0.33|0.8|0.83|6|0|168; (*GB) gi|225434319|ref|XP_002265672.1| (e_value=2e-52) PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa isoform 1 [Vitis vinifera];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=6e-54) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G27960.1 (e_value=1e-53) | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | chr4:13916065-13917203 REVERSE LENGTH=148;; (*ITAG) Solyc06g082600.2.1 (e_value=4e-55) genomic_reference:SL2.40ch06 gene_region:44657000-44661486 transcript_region:SL2.40ch06:44657000..44661486- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 **** Q2PYY4_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00023213g0008.1 protein AED:0.15 eAED:0.15 QI:13|0.68|0.88|1|0.68|0.58|17|229|876; (*GB) gi|356559110|ref|XP_003547844.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770-like [Glycine max];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT1G79620.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc10g085670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64098873-64104331 transcript_region:SL2.40ch10:64098873..64104331- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023213g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|1|1|4|143|490; (*GB) gi|225439719|ref|XP_002273138.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase STN8, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LZV4|STN8_ARATH (e_value=0.0) Serine/threonine-protein kinase STN8, chloroplastic OS=Arabidopsis thaliana GN=STN8 PE=2 SV=1;; (*TAIR) AT5G01920.1 (e_value=0.0) | Symbols: STN8 | Protein kinase superfamily protein | chr5:359154-360867 FORWARD LENGTH=495;; (*ITAG) Solyc10g085680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64107901-64111188 transcript_region:SL2.40ch10:64107901..64111188- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002580g0004.1 protein AED:0.13 eAED:0.13 QI:316|0.92|1|1|0.78|0.8|15|358|381; (*GB) gi|224078896|ref|XP_002305670.1| (e_value=1e-173) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11170.1 (e_value=2e-160) | Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438;; (*ITAG) Solyc10g009170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:3168005-3172774 transcript_region:SL2.40ch10:3168005..3172774+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00026086g0009.1 protein AED:0.28 eAED:0.28 QI:61|0|0.5|1|1|1|2|134|18 NbS00026086g0012.1 protein AED:0.29 eAED:0.33 QI:304|0.33|0.42|1|0|0.42|7|386|237; (*GB) gi|133711807|gb|ABO36625.1| (e_value=9e-77) hypothetical protein LYC_68t000010 [Solanum lycopersicum];; (*TAIR) AT3G57280.1 (e_value=3e-37) | Symbols: | Transmembrane proteins 14C | chr3:21193960-21195547 FORWARD LENGTH=226;; (*ITAG) Solyc10g079260.1.1 (e_value=2e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60150359-60154140 transcript_region:SL2.40ch10:60150359..60154140+ go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 *-*- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00016885g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.71|1|0.83|0.85|7|0|318; (*GB) gi|255559120|ref|XP_002520582.1| (e_value=0.0) cytosolic purine 5-nucleotidase, putative [Ricinus communis];; (*SWP) sp|Q75K12|NT5D_DICDI (e_value=4e-71) 5'-nucleotidase domain-containing protein DDB_G0275467 OS=Dictyostelium discoideum GN=DDB_G0275467 PE=3 SV=1;; (*TAIR) AT2G23890.1 (e_value=0.0) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553;; (*ITAG) Solyc07g006190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1015061-1025947 transcript_region:SL2.40ch07:1015061..1025947- go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-nucleotidase (AHRD V1 **** D3B8C8_POLPA); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00031875g0001.1 protein AED:0.02 eAED:0.02 QI:580|0.66|0.75|1|0|0|4|414|763; (*GB) gi|147771670|emb|CAN71551.1| (e_value=0.0) hypothetical protein VITISV_030236 [Vitis vinifera];; (*SWP) sp|Q6S5G3|TOC90_ARATH (e_value=0.0) Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1;; (*TAIR) AT5G20300.2 (e_value=0.0) | Symbols: | Avirulence induced gene (AIG1) family protein | chr5:6853544-6856332 REVERSE LENGTH=793;; (*ITAG) Solyc07g007650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2303928-2305559 transcript_region:SL2.40ch07:2303928..2305559+ functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 ***- TOC90_ARATH)"; NbS00031875g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|359484746|ref|XP_003633154.1| (e_value=8e-123) PREDICTED: uncharacterized protein LOC100257560 [Vitis vinifera];; (*ITAG) Solyc07g007660.1.1 (e_value=4e-157) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2309984-2311204 transcript_region:SL2.40ch07:2309984..2311204- functional_description:"Unknown Protein (AHRD V1)"; NbS00043567g0005.1 protein AED:0.22 eAED:0.22 QI:111|0.33|0.75|1|1|1|4|599|691; (*GB) gi|297738805|emb|CBI28050.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66GI4|PP179_ARATH (e_value=1e-100) Pentatricopeptide repeat-containing protein At2g32230, mitochondrial OS=Arabidopsis thaliana GN=At2g32230 PE=2 SV=1;; (*TAIR) AT2G32230.1 (e_value=9e-102) | Symbols: PRORP1 | proteinaceous RNase P 1 | chr2:13679608-13681756 REVERSE LENGTH=572;; (*ITAG) Solyc07g019650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:12629012-12634496 transcript_region:SL2.40ch07:12629012..12634496- go_terms:GO:0004526,GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial (AHRD V1 *--- PP179_ARATH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0004526,GO:0005215 NbS00002668g0003.1 protein AED:0.20 eAED:0.37 QI:0|0|0.5|1|1|1|2|426|122; (*GB) gi|255547335|ref|XP_002514725.1| (e_value=5e-20) sensory transduction histidine kinase, putative [Ricinus communis];; (*SWP) sp|Q9LKL2|APRR1_ARATH (e_value=3e-21) Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1;; (*TAIR) AT5G61380.1 (e_value=2e-22) | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618;; (*ITAG) Solyc06g069690.2.1 (e_value=5e-23) genomic_reference:SL2.40ch06 gene_region:39793175-39798747 transcript_region:SL2.40ch06:39793175..39798747- go_terms:GO:0030528,GO:0010843 functional_description:"Pseudo response regulator (AHRD V1 **** B9N4C8_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0030528,GO:0010843 NbS00007468g0012.1 protein AED:0.29 eAED:0.33 QI:0|1|0.33|1|1|1|3|0|160; (*GB) gi|356552918|ref|XP_003544809.1| (e_value=3e-40) PREDICTED: cytochrome c oxidase subunit 6b-1-like [Glycine max];; (*SWP) sp|Q9S7L9|CX6B1_ARATH (e_value=8e-37) Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=2 SV=1;; (*TAIR) AT1G22450.1 (e_value=6e-38) | Symbols: COX6B, ATCOX6B2 | cytochrome C oxidase 6B | chr1:7925447-7926918 FORWARD LENGTH=191;; (*ITAG) Solyc04g074550.2.1 (e_value=7e-52) genomic_reference:SL2.40ch04 gene_region:58123575-58129278 transcript_region:SL2.40ch04:58123575..58129278+ go_terms:GO:0005507 functional_description:"Cytochrome c oxidase subunit VIb (AHRD V1 *-*- B4R7T3_DROSI); contains Interpro domain(s) IPR003213 Cytochrome c oxidase, subunit VIb "; GO:0005507 NbS00007468g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|221; (*GB) gi|224060796|ref|XP_002300270.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g074560.1.1 (e_value=6e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58131709-58131957 transcript_region:SL2.40ch04:58131709..58131957- functional_description:"Unknown Protein (AHRD V1)"; NbS00007468g0006.1 protein AED:0.25 eAED:0.54 QI:0|0|0|0.66|1|1|3|0|330; (*GB) gi|224082103|ref|XP_002306566.1| (e_value=4e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78310.1 (e_value=2e-20) | Symbols: | VQ motif-containing protein | chr1:29464003-29464938 REVERSE LENGTH=311;; (*ITAG) Solyc04g074520.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58099993-58100964 transcript_region:SL2.40ch04:58099993..58100964- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00000988g0023.1 protein AED:0.06 eAED:0.07 QI:38|1|0.5|1|1|1|2|0|334; (*GB) gi|255544482|ref|XP_002513302.1| (e_value=3e-146) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G16770.1 (e_value=1e-126) | Symbols: | unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:5737900-5739110 FORWARD LENGTH=324;; (*ITAG) Solyc03g113510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57687718-57688765 transcript_region:SL2.40ch03:57687718..57688765- functional_description:"Contig An16c0080 complete genome (AHRD V1 ***- A2R766_ASPNC)"; NbS00000988g0017.1 protein AED:0.10 eAED:0.14 QI:0|1|0.66|1|1|1|6|0|739; (*GB) gi|255540853|ref|XP_002511491.1| (e_value=0.0) galactosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc03g113520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57689199-57692613 transcript_region:SL2.40ch03:57689199..57692613- go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00000988g0021.1 protein AED:0.01 eAED:0.01 QI:459|1|1|1|1|1|7|260|695; (*GB) gi|255540863|ref|XP_002511496.1| (e_value=0.0) HIPL1 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=0.0) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=0.0) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc03g113490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57669071-57672798 transcript_region:SL2.40ch03:57669071..57672798+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00000988g0019.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|3|43|341; (*GB) gi|147821088|emb|CAN75378.1| (e_value=1e-77) hypothetical protein VITISV_027593 [Vitis vinifera];; (*SWP) sp|P20025|MYB38_MAIZE (e_value=1e-29) Myb-related protein Zm38 OS=Zea mays PE=2 SV=1;; (*TAIR) AT3G28470.1 (e_value=8e-43) | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like superfamily protein | chr3:10674579-10675724 REVERSE LENGTH=317;; (*ITAG) Solyc03g113530.2.1 (e_value=4e-155) genomic_reference:SL2.40ch03 gene_region:57698509-57700231 transcript_region:SL2.40ch03:57698509..57700231+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LSI7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000988g0020.1 protein AED:0.22 eAED:0.22 QI:0|0.9|0.63|1|1|1|11|0|826; (*GB) gi|255540861|ref|XP_002511495.1| (e_value=0.0) tRNA ligase, putative [Ricinus communis];; (*TAIR) AT1G18950.1 (e_value=0.0) | Symbols: | DDT domain superfamily | chr1:6546539-6551549 FORWARD LENGTH=750;; (*ITAG) Solyc03g113500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57675977-57687123 transcript_region:SL2.40ch03:57675977..57687123+ go_terms:GO:0004812 functional_description:"Aminoacyl-tRNA synthetase (AHRD V1 **-* Q2PF39_TRIPR)"; GO:0004812 NbS00004284g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|0.5|1|1|2|101|495; (*GB) gi|225457305|ref|XP_002281450.1| (e_value=1e-120) PREDICTED: uncharacterized protein LOC100263964 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=4e-23) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT1G26580.1 (e_value=2e-60) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493;; (*ITAG) Solyc06g069560.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:39701636-39702883 transcript_region:SL2.40ch06:39701636..39702883+ go_terms:GO:0003677 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00017903g0011.1 protein AED:0.28 eAED:0.31 QI:0|0.69|0.64|0.92|0.76|0.78|14|0|523; (*GB) gi|356495657|ref|XP_003516691.1| (e_value=8e-110) PREDICTED: uncharacterized protein LOC100813707 [Glycine max];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-62) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G23050.2 (e_value=2e-89) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr4:12080112-12083708 FORWARD LENGTH=736;; (*ITAG) Solyc08g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2412322-2421171 transcript_region:SL2.40ch08:2412322..2421171+ go_terms:GO:0005515,GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004712 NbS00017903g0010.1 protein AED:0.40 eAED:0.63 QI:95|0|0.25|0.5|1|1|4|0|187; (*GB) gi|255553223|ref|XP_002517654.1| (e_value=2e-101) Pre-mRNA-processing-splicing factor, putative [Ricinus communis];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=4e-81) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=2e-99) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=3e-106) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00017903g0012.1 protein AED:0.12 eAED:0.12 QI:203|1|1|1|1|1|8|358|463; (*GB) gi|225426775|ref|XP_002282807.1| (e_value=0.0) PREDICTED: lysophospholipid acyltransferase [Vitis vinifera];; (*SWP) sp|Q8BH98|MBOA1_MOUSE (e_value=1e-41) Lysophospholipid acyltransferase 1 OS=Mus musculus GN=Mboat1 PE=1 SV=1;; (*TAIR) AT1G12640.1 (e_value=0.0) | Symbols: | MBOAT (membrane bound O-acyl transferase) family protein | chr1:4303586-4305666 REVERSE LENGTH=462;; (*ITAG) Solyc08g007860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2375701-2384003 transcript_region:SL2.40ch08:2375701..2384003- go_terms:GO:0008415 functional_description:"Lysophospholipid acyltransferase (AHRD V1 **** B6K7S6_SCHJY); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0008415 NbS00047373g0002.1 protein AED:0.26 eAED:0.26 QI:337|0.62|0.66|0.88|1|1|9|0|518; (*GB) gi|116563473|gb|ABJ99758.1| (e_value=0.0) phospholipase C [Nicotiana tabacum];; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=0.0) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2 PE=1 SV=1;; (*TAIR) AT3G08510.3 (e_value=0.0) | Symbols: | phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=552;; (*ITAG) Solyc05g052760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62099696-62104689 transcript_region:SL2.40ch05:62099696..62104689+ go_terms:GO:0023034,GO:0006629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (AHRD V1 ***- O49902_NICRU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00001408g0010.1 protein AED:0.09 eAED:0.09 QI:732|1|1|1|1|1|2|184|173; (*GB) gi|356576759|ref|XP_003556497.1| (e_value=8e-95) PREDICTED: putative phosphoglycerate mutase DET1-like [Glycine max];; (*SWP) sp|Q99288|DET1_YEAST (e_value=3e-24) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=2e-82) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc01g098580.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:80825126-80828408 transcript_region:SL2.40ch01:80825126..80828408+ go_terms:GO:0003993 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003993 NbS00001408g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|255542526|ref|XP_002512326.1| (e_value=3e-36) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g098570.2.1 (e_value=4e-72) genomic_reference:SL2.40ch01 gene_region:80817213-80818517 transcript_region:SL2.40ch01:80817213..80818517+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001408g0013.1 protein AED:0.33 eAED:0.34 QI:228|0.66|0.9|1|0.77|0.8|10|0|300; (*GB) gi|225451069|ref|XP_002263418.1| (e_value=3e-80) PREDICTED: putative ERD6-like transporter [Vitis vinifera];; (*SWP) sp|Q3ECP7|ERDL5_ARATH (e_value=1e-68) Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2;; (*TAIR) AT1G54730.2 (e_value=9e-70) | Symbols: | Major facilitator superfamily protein | chr1:20424471-20429978 FORWARD LENGTH=470;; (*ITAG) Solyc01g098560.2.1 (e_value=3e-110) genomic_reference:SL2.40ch01 gene_region:80808104-80812097 transcript_region:SL2.40ch01:80808104..80812097+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00028753g0003.1 protein AED:0.15 eAED:0.15 QI:252|1|0.8|1|1|1|5|0|978; (*GB) gi|359473951|ref|XP_003631380.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: protein NLP7-like [Vitis vinifera];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=0.0) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=0.0) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g008410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2829724-2834799 transcript_region:SL2.40ch08:2829724..2834799+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER15_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00025207g0009.1 protein AED:0.10 eAED:0.11 QI:0|0.8|0.83|1|1|1|6|935|410; (*GB) gi|224106043|ref|XP_002314023.1| (e_value=4e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66GR3|BH130_ARATH (e_value=5e-61) Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1;; (*TAIR) AT2G42280.1 (e_value=4e-62) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359;; (*ITAG) Solyc01g086870.2.1 (e_value=4e-165) genomic_reference:SL2.40ch01 gene_region:73557988-73560314 transcript_region:SL2.40ch01:73557988..73560314- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00025207g0008.1 protein AED:0.36 eAED:0.36 QI:241|0.87|0.77|1|0.75|0.77|9|327|419; (*GB) gi|359487438|ref|XP_003633594.1| (e_value=4e-129) PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q94C11|SUGP1_ARATH (e_value=9e-112) SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1;; (*TAIR) AT3G52120.1 (e_value=7e-113) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein | chr3:19329243-19331738 FORWARD LENGTH=443;; (*ITAG) Solyc01g086890.2.1 (e_value=2e-173) genomic_reference:SL2.40ch01 gene_region:73568813-73575413 transcript_region:SL2.40ch01:73568813..73575413- go_terms:GO:0006396,GO:0005622 functional_description:"Splicing factor 4-like protein (Fragment) (AHRD V1 *--- A6ML01_CALJA); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0006396,GO:0005622 NbS00025207g0013.1 protein AED:0.33 eAED:0.33 QI:153|1|0.85|1|0.83|0.85|7|0|253; (*GB) gi|297736221|emb|CBI24859.3| (e_value=3e-118) unnamed protein product [Vitis vinifera];; (*SWP) sp|P74516|TRML_SYNY3 (e_value=4e-45) Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1;; (*TAIR) AT5G26880.2 (e_value=6e-105) | Symbols: | AGAMOUS-like 26 | chr5:9457950-9459190 REVERSE LENGTH=263;; (*ITAG) Solyc01g086900.2.1 (e_value=1e-145) genomic_reference:SL2.40ch01 gene_region:73577959-73585260 transcript_region:SL2.40ch01:73577959..73585260+ go_terms:GO:0006396 functional_description:"RNA methyltransferase TrmH group 2 (AHRD V1 *-*- Q3M884_ANAVT); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00014038g0001.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|0|0.5|2|406|201; (*GB) gi|224062011|ref|XP_002300710.1| (e_value=4e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|F4I0N3|Y1572_ARATH (e_value=3e-14) WEB family protein At1g75720 OS=Arabidopsis thaliana GN=At1g75720 PE=2 SV=1;; (*TAIR) AT1G75720.2 (e_value=2e-15) | Symbols: | Plant protein of unknown function (DUF827) | chr1:28434648-28435321 REVERSE LENGTH=193;; (*ITAG) Solyc04g081390.2.1 (e_value=7e-43) genomic_reference:SL2.40ch04 gene_region:62982388-62984072 transcript_region:SL2.40ch04:62982388..62984072- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00010748g0005.1 protein AED:0.22 eAED:0.28 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|57014003|ref|YP_173474.1| (e_value=4e-63) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=1e-37) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=2e-37) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00009065g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.57|0.5|1|0.28|0.37|8|204|414; (*GB) gi|225449953|ref|XP_002271029.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(P)+] [Vitis vinifera];; (*TAIR) AT3G07690.1 (e_value=0.0) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr3:2457232-2459378 FORWARD LENGTH=466;; (*ITAG) Solyc01g088150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74757326-74761670 transcript_region:SL2.40ch01:74757326..74761670- go_terms:GO:0004367,GO:0051287 functional_description:"Glycerol-3-phosphate dehydrogenase-like protein (AHRD V1 **** Q8S2G5_ORYSJ); contains Interpro domain(s) IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004367,GO:0051287 NbS00009065g0002.1 protein AED:0.52 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|157; (*GB) gi|147774145|emb|CAN76949.1| (e_value=4e-25) hypothetical protein VITISV_007275 [Vitis vinifera];; (*TAIR) AT5G13470.1 (e_value=4e-23) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4318562-4319720 FORWARD LENGTH=159;; (*ITAG) Solyc01g088140.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:74752234-74755320 transcript_region:SL2.40ch01:74752234..74755320- functional_description:"Unknown Protein (AHRD V1)"; NbS00009065g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.57|0.5|0.87|1|1|8|0|733; (*GB) gi|356542909|ref|XP_003539907.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max];; (*SWP) sp|Q10M00|C3H22_ORYSJ (e_value=4e-158) Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2;; (*TAIR) AT3G21100.2 (e_value=2e-98) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399162-7401870 FORWARD LENGTH=602;; (*ITAG) Solyc01g088100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74721207-74725442 transcript_region:SL2.40ch01:74721207..74725442+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 22 (AHRD V1 ***- C3H22_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00001908g0013.1 protein AED:0.17 eAED:0.19 QI:396|0.77|0.78|0.94|0.88|0.84|19|233|756; (*GB) gi|4107276|emb|CAA67130.1| (e_value=0.0) acetyl-CoA synthetase [Solanum tuberosum];; (*SWP) sp|B9DGD6|ACS_ARATH (e_value=0.0) Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1;; (*TAIR) AT5G36880.2 (e_value=0.0) | Symbols: ACS | acetyl-CoA synthetase | chr5:14534961-14540296 REVERSE LENGTH=743;; (*ITAG) Solyc07g017860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8204531-8209762 transcript_region:SL2.40ch07:8204531..8209762+ go_terms:GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- Q2J3D0_RHOP2); contains Interpro domain(s) IPR011904 Acetate--CoA ligase "; GO:0003987 NbS00001908g0012.1 protein AED:0.22 eAED:0.22 QI:329|0.91|0.92|1|1|1|13|0|657; (*GB) gi|416664|sp|Q03194.1|PMA4_NICPL (e_value=0.0) RecName: Full=Plasma membrane ATPase 4; AltName: Full=Proton pump 4;; (*SWP) sp|Q03194|PMA4_NICPL (e_value=0.0) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT2G18960.1 (e_value=0.0) | Symbols: AHA1, PMA, OST2, HA1 | H(+)-ATPase 1 | chr2:8221858-8227268 FORWARD LENGTH=949;; (*ITAG) Solyc07g017780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00001908g0016.1 protein AED:0.05 eAED:0.07 QI:0|0|0|0.66|0.5|0.66|3|0|134; (*ITAG) Solyc07g017800.2.1 (e_value=6e-20) genomic_reference:SL2.40ch07 gene_region:8119614-8126697 transcript_region:SL2.40ch07:8119614..8126697- functional_description:"Unknown Protein (AHRD V1)"; NbS00019833g0008.1 protein AED:0.30 eAED:0.32 QI:0|0.78|0.86|1|0.78|0.8|15|278|529; (*GB) gi|359495436|ref|XP_002274710.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247818 [Vitis vinifera];; (*SWP) sp|P0C872|JMJD7_MOUSE (e_value=4e-18) JmjC domain-containing protein 7 OS=Mus musculus GN=Jmjd7 PE=2 SV=1;; (*TAIR) AT5G19840.1 (e_value=9e-165) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6705372-6709382 FORWARD LENGTH=505;; (*ITAG) Solyc09g065690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59512700-59525229 transcript_region:SL2.40ch09:59512700..59525229- functional_description:"Transcription factor jumonji (JmjC) domain-containing protein-like (AHRD V1 **-- Q5ZC07_ORYSJ); contains Interpro domain(s) IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase "; NbS00019833g0006.1 protein AED:0.18 eAED:0.40 QI:12|0|0|1|0|0|5|0|310; (*GB) gi|147845358|emb|CAN83352.1| (e_value=2e-12) hypothetical protein VITISV_022160 [Vitis vinifera];; (*ITAG) Solyc06g033930.1.1 (e_value=4e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:20112440-20113314 transcript_region:SL2.40ch06:20112440..20113314- go_terms:GO:0008270 functional_description:"Polyprotein (AHRD V1 ***- Q94HW2_ARATH); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00001267g0010.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|212; (*GB) gi|224062025|ref|XP_002300717.1| (e_value=5e-55) SAUR family protein [Populus trichocarpa];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=1e-22) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=1e-55) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc04g081270.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62890273-62890599 transcript_region:SL2.40ch04:62890273..62890599- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00001267g0009.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|0|1|2|0|77 NbS00001267g0115.1 protein AED:0.28 eAED:0.28 QI:265|0.8|1|1|1|1|6|359|181 NbS00001267g0103.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|4|0|396 NbS00001267g0123.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.75|1|0|0|4|60|142 NbS00001267g0122.1 protein AED:0.07 eAED:0.07 QI:71|1|1|1|0.83|0.71|7|272|239 NbS00001267g0107.1 protein AED:0.15 eAED:0.15 QI:284|0.87|0.88|1|0.5|0.44|9|0|514 NbS00001267g0110.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|93 NbS00005091g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|76 NbC25816420g0002.1 protein AED:0.13 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|143; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=4e-70) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=6e-53) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=5e-54) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=2e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00011984g0018.1 protein AED:0.12 eAED:0.12 QI:143|1|1|1|1|1|3|642|133; (*GB) gi|40287540|gb|AAR83884.1| (e_value=5e-84) ly200 protein [Capsicum annuum];; (*SWP) sp|P49211|RL321_ARATH (e_value=2e-80) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=1e-81) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=6e-86) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "; GO:0003735,GO:0005515 NbS00011984g0002.1 protein AED:0.12 eAED:0.12 QI:285|0.95|0.95|1|0.8|0.80|21|348|1097; (*GB) gi|350537001|ref|NP_001234275.1| (e_value=0.0) DNA damage-binding protein 1 [Solanum lycopersicum];; (*SWP) sp|Q6QNU4|DDB1_SOLLC (e_value=0.0) DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1;; (*TAIR) AT4G05420.1 (e_value=0.0) | Symbols: DDB1A | damaged DNA binding protein 1A | chr4:2746288-2752663 FORWARD LENGTH=1088;; (*ITAG) Solyc02g021650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14069797-14090192 transcript_region:SL2.40ch02:14069797..14090192- go_terms:GO:0005515,GO:0003684 functional_description:"DNA damage-binding protein 1 (AHRD V1 **** C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515,GO:0003684 NbS00011984g0019.1 protein AED:0.19 eAED:0.21 QI:0|0.2|0.33|0.83|0.8|0.66|6|325|617; (*GB) gi|365222944|gb|AEW69824.1| (e_value=0.0) Hop-interacting protein THI063 [Solanum lycopersicum];; (*SWP) sp|Q9S9Q9|Y1044_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2;; (*TAIR) AT1G30440.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:10759475-10762199 FORWARD LENGTH=665;; (*ITAG) Solyc02g021640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14039620-14043380 transcript_region:SL2.40ch02:14039620..14043380- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00060528g0002.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|1|1|2|0|164; (*ITAG) Solyc04g005480.1.1 (e_value=1e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:323321-323833 transcript_region:SL2.40ch04:323321..323833- functional_description:"Unknown Protein (AHRD V1)"; NbS00043047g0001.1 protein AED:0.00 eAED:0.00 QI:165|1|1|1|0|0|2|228|72; (*TAIR) AT5G43580.1 (e_value=3e-15) | Symbols: | Serine protease inhibitor, potato inhibitor I-type family protein | chr5:17508098-17508668 REVERSE LENGTH=99;; (*ITAG) Solyc01g108390.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:87466418-87466957 transcript_region:SL2.40ch01:87466418..87466957- go_terms:GO:0009611 functional_description:"Proteinase inhibitor (AHRD V1 ***- D6BR63_9ROSI); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00002396g0014.1 protein AED:0.00 eAED:0.00 QI:0|0.5|0|1|0.5|1|3|0|520; (*GB) gi|255563415|ref|XP_002522710.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZR09|FDL25_ARATH (e_value=2e-138) Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=4 SV=1;; (*TAIR) AT4G03220.1 (e_value=1e-139) | Symbols: | Protein with RNI-like/FBD-like domains | chr4:1417472-1419148 FORWARD LENGTH=498;; (*ITAG) Solyc07g053040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58818029-58820449 transcript_region:SL2.40ch07:58818029..58820449- functional_description:"F-box family protein (AHRD V1 ***- B9I6J7_POPTR); contains Interpro domain(s) IPR013596 FBD "; NbS00002396g0009.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|0.5|0.66|3|0|599; (*GB) gi|225461199|ref|XP_002283229.1| (e_value=0.0) PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00002396g0012.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0.5|2|0|213; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-72) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc08g041950.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:28281334-28284708 transcript_region:SL2.40ch08:28281334..28284708- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00002396g0011.1 protein AED:0.36 eAED:0.47 QI:31|0|0|1|0|0|2|0|136; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-36) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002396g0102.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|89 NbS00050159g0012.1 protein AED:0.19 eAED:0.21 QI:0|0.88|0.7|1|0.77|0.7|10|417|749; (*GB) gi|13620228|emb|CAC36403.1| (e_value=0.0) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q8RXR2|CLCF_ARATH (e_value=0.0) Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2;; (*TAIR) AT1G55620.2 (e_value=0.0) | Symbols: CLC-F, ATCLC-F | chloride channel F | chr1:20787338-20790990 REVERSE LENGTH=781;; (*ITAG) Solyc10g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:557038-564501 transcript_region:SL2.40ch10:557038..564501- go_terms:GO:0005515 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0005515 NbS00050159g0015.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.33|0.66|0.5|0.66|3|556|76 NbS00050159g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|330318808|gb|AEC11064.1| (e_value=1e-76) photosystem I reaction center V [Camellia sinensis];; (*SWP) sp|Q9S7N7|PSAG_ARATH (e_value=1e-67) Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1;; (*TAIR) AT1G55670.1 (e_value=8e-69) | Symbols: PSAG | photosystem I subunit G | chr1:20802874-20803356 REVERSE LENGTH=160;; (*ITAG) Solyc07g066150.1.1 (e_value=6e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64869442-64869882 transcript_region:SL2.40ch07:64869442..64869882+ go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit V (AHRD V1 ***- B6U534_MAIZE); contains Interpro domain(s) IPR017494 Photosystem I reaction center, PsaG, plant "; GO:0016020 NbS00050159g0014.1 protein AED:0.25 eAED:0.27 QI:837|0.66|0.57|1|0.33|0.42|7|0|685; (*GB) gi|147845807|emb|CAN80099.1| (e_value=5e-112) hypothetical protein VITISV_002699 [Vitis vinifera];; (*SWP) sp|P0CB21|Y4645_ARATH (e_value=9e-12) Uncharacterized protein At4g26450 OS=Arabidopsis thaliana GN=At4g26450 PE=4 SV=1;; (*TAIR) AT4G26450.1 (e_value=7e-13) | Symbols: | unknown protein; Has 614 Blast hits to 492 proteins in 137 species: Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | chr4:13362556-13364920 FORWARD LENGTH=708;; (*ITAG) Solyc10g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:567523-571202 transcript_region:SL2.40ch10:567523..571202+ functional_description:"Os04g0431000 protein (Fragment) (AHRD V1 *-*- Q0JD52_ORYSJ)"; NbS00050159g0010.1 protein AED:0.25 eAED:0.52 QI:0|0.5|0|1|1|1|3|0|506; (*GB) gi|225463522|ref|XP_002265097.1| (e_value=5e-85) PREDICTED: WPP domain-interacting protein 2-like [Vitis vinifera];; (*SWP) sp|Q8GXA4|WIP1_ARATH (e_value=2e-25) WPP domain-interacting protein 1 OS=Arabidopsis thaliana GN=WIP1 PE=1 SV=1;; (*TAIR) AT4G26455.1 (e_value=1e-26) | Symbols: WIP1 | WPP domain interacting protein 1 | chr4:13365737-13367384 FORWARD LENGTH=489;; (*ITAG) Solyc07g066170.2.1 (e_value=7e-88) genomic_reference:SL2.40ch07 gene_region:64876218-64880395 transcript_region:SL2.40ch07:64876218..64880395- functional_description:"WPP domain-interacting protein 1 (AHRD V1 ***- WIP1_ARATH)"; NbS00040297g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|83283971|gb|ABC01893.1| (e_value=3e-137) vernalization independence 3-like protein [Solanum tuberosum];; (*SWP) sp|Q6P5M2|WDR61_DANRE (e_value=2e-49) WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1;; (*TAIR) AT4G29830.1 (e_value=3e-103) | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321;; (*ITAG) Solyc07g041080.2.1 (e_value=9e-139) genomic_reference:SL2.40ch07 gene_region:49110384-49114223 transcript_region:SL2.40ch07:49110384..49114223+ go_terms:GO:0000166 functional_description:"WD repeat-containing protein 61 (AHRD V1 **-- B5XGQ3_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00040297g0002.1 protein AED:0.54 eAED:0.54 QI:0|0|0.5|0.5|1|1|2|0|154; (*GB) gi|83283971|gb|ABC01893.1| (e_value=2e-71) vernalization independence 3-like protein [Solanum tuberosum];; (*SWP) sp|Q6P5M2|WDR61_DANRE (e_value=7e-22) WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1;; (*TAIR) AT4G29830.1 (e_value=1e-48) | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321;; (*ITAG) Solyc07g041080.2.1 (e_value=1e-74) genomic_reference:SL2.40ch07 gene_region:49110384-49114223 transcript_region:SL2.40ch07:49110384..49114223+ go_terms:GO:0000166 functional_description:"WD repeat-containing protein 61 (AHRD V1 **-- B5XGQ3_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00031834g0009.1 protein AED:0.06 eAED:0.06 QI:191|0.5|0.66|1|0|0|3|149|238 NbS00031834g0008.1 protein AED:0.12 eAED:0.12 QI:0|1|0.66|1|1|1|3|0|534; (*GB) gi|225429331|ref|XP_002271922.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257657 [Vitis vinifera];; (*TAIR) AT3G19540.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr3:6780762-6782633 FORWARD LENGTH=485;; (*ITAG) Solyc01g107350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86675216-86677739 transcript_region:SL2.40ch01:86675216..86677739- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00006773g0005.1 protein AED:0.34 eAED:0.46 QI:0|0|0|1|0|0|3|0|258; (*GB) gi|351653928|ref|YP_004891651.1| (e_value=3e-77) ycf2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=1e-78) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-64) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-79) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00006773g0006.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|0|0|2|0|221; (*GB) gi|351653928|ref|YP_004891651.1| (e_value=5e-110) ycf2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P09976|YCF2_TOBAC (e_value=8e-111) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=2e-96) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-110) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00006773g0004.1 protein AED:0.26 eAED:0.32 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-39) hypothetical protein [Nicotiana tabacum]; NbS00006773g0007.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|295311767|ref|YP_003587509.1| (e_value=6e-26) conserved hypothetical protein ycf2 [Oncidium Gower Ramsey];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=5e-17) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=4e-14) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc03g120370.1.1 (e_value=9e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62853631-62854023 transcript_region:SL2.40ch03:62853631..62854023- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- A6Y9W3_9MAGN); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00024107g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|239; (*GB) gi|255584856|ref|XP_002533144.1| (e_value=7e-26) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g054960.1.1 (e_value=2e-89) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:52645525-52646292 transcript_region:SL2.40ch04:52645525..52646292- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 ***- Q2QY99_ORYSJ)"; NbS00059037g0007.1 protein AED:0.08 eAED:0.08 QI:144|1|0.90|1|0.9|0.90|11|260|481; (*GB) gi|225449388|ref|XP_002282470.1| (e_value=0.0) PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera];; (*SWP) sp|Q4R828|RCCD1_MACFA (e_value=3e-26) RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1;; (*TAIR) AT3G55580.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:20612766-20615730 FORWARD LENGTH=488;; (*ITAG) Solyc05g052950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62268456-62274027 transcript_region:SL2.40ch05:62268456..62274027- go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 *--- B9PXR3_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00059037g0005.1 protein AED:0.31 eAED:0.31 QI:169|0.66|0.7|0.9|0.88|0.7|10|958|245; (*GB) gi|224112671|ref|XP_002316257.1| (e_value=2e-72) folylpolyglutamate synthase [Populus trichocarpa];; (*SWP) sp|F4K2A1|FPGS1_ARATH (e_value=2e-70) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1;; (*TAIR) AT5G05980.1 (e_value=2e-71) | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog B | chr5:1799738-1804441 REVERSE LENGTH=571;; (*ITAG) Solyc05g052920.2.1 (e_value=1e-90) genomic_reference:SL2.40ch05 gene_region:62240025-62249726 transcript_region:SL2.40ch05:62240025..62249726- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9HMM6_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00059037g0004.1 protein AED:0.51 eAED:0.51 QI:0|0.2|0.33|0.5|1|1|6|0|241; (*GB) gi|296086169|emb|CBI31610.3| (e_value=4e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4K2A1|FPGS1_ARATH (e_value=2e-62) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1;; (*TAIR) AT5G05980.2 (e_value=8e-64) | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog B | chr5:1799738-1804177 REVERSE LENGTH=513;; (*ITAG) Solyc05g052920.2.1 (e_value=2e-119) genomic_reference:SL2.40ch05 gene_region:62240025-62249726 transcript_region:SL2.40ch05:62240025..62249726- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9HMM6_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00015340g0008.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|1|1|2|0|301; (*GB) gi|242078965|ref|XP_002444251.1| (e_value=6e-22) hypothetical protein SORBIDRAFT_07g019050 [Sorghum bicolor];; (*TAIR) AT1G21150.1 (e_value=2e-17) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc12g010650.1.1 (e_value=2e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00015340g0002.1 protein AED:0.05 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|224151054|ref|XP_002337051.1| (e_value=2e-32) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9SFE4|ERF12_ARATH (e_value=2e-30) Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1;; (*TAIR) AT1G21910.1 (e_value=1e-31) | Symbols: DREB26 | Integrase-type DNA-binding superfamily protein | chr1:7696655-7697347 FORWARD LENGTH=230;; (*ITAG) Solyc11g012980.1.1 (e_value=1e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5825005-5825664 transcript_region:SL2.40ch11:5825005..5825664+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 9 (AHRD V1 *-*- ERF80_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00015340g0013.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0|0|3|0|206; (*GB) gi|340842545|gb|AEK78195.1| (e_value=2e-66) hypothetical chloroplast RF2 [Basella alba];; (*SWP) sp|Q6EVY7|YCF2_NYMAL (e_value=2e-65) Protein ycf2 OS=Nymphaea alba GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-42) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc04g024540.1.1 (e_value=4e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:13374870-13377454 transcript_region:SL2.40ch04:13374870..13377454- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9X1_HAMJA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00015340g0012.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|225242|prf||1211235CA (e_value=3e-57) ORF 1708;; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=1e-58) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-53) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-59) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00028623g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0|0.8|0.25|0.4|5|0|300; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=4e-126) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=5e-89) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=3e-90) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=8e-129) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00002040g0007.1 protein AED:0.27 eAED:0.27 QI:16|0.88|0.8|0.9|0.77|0.9|10|0|423; (*GB) gi|146424382|emb|CAM97883.1| (e_value=0.0) actin-related protein 3 [Nicotiana tabacum];; (*SWP) sp|Q9SAF1|ARP3_ARATH (e_value=0.0) Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1;; (*TAIR) AT1G13180.1 (e_value=0.0) | Symbols: DIS1, ARP3, ATARP3 | Actin-like ATPase superfamily protein | chr1:4495394-4498204 FORWARD LENGTH=427;; (*ITAG) Solyc04g024530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:13328765-13343460 transcript_region:SL2.40ch04:13328765..13343460+ go_terms:GO:0005524 functional_description:"Actin-like protein 3 (AHRD V1 ***- B6SSZ5_MAIZE); contains Interpro domain(s) IPR015623 Actin-related protein 3 "; GO:0005524 NbS00003621g0009.1 protein AED:0.16 eAED:0.16 QI:128|0.9|0.90|1|0.7|0.72|11|781|315; (*GB) gi|225423593|ref|XP_002275625.1| (e_value=5e-158) PREDICTED: mitochondrial translocator assembly and maintenance protein 41 homolog [Vitis vinifera];; (*SWP) sp|Q3TUH1|TAM41_MOUSE (e_value=7e-45) Mitochondrial translocator assembly and maintenance protein 41 homolog OS=Mus musculus GN=Tamm41 PE=1 SV=2;; (*TAIR) AT3G47630.2 (e_value=1e-148) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:17563254-17565162 REVERSE LENGTH=332;; (*ITAG) Solyc02g081840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40211209-40215580 transcript_region:SL2.40ch02:40211209..40215580+ go_terms:GO:0005515 functional_description:"MMP37-like protein mitochondrial (AHRD V1 ***- C1C198_9MAXI); contains Interpro domain(s) IPR015222 Mitochondrial matrix Mmp37 "; GO:0005515 NbS00003621g0002.1 protein AED:0.00 eAED:0.38 QI:254|-1|0|1|-1|1|1|806|589; (*GB) gi|225423591|ref|XP_002273828.1| (e_value=0.0) PREDICTED: uncharacterized amino acid permease YfnA [Vitis vinifera];; (*SWP) sp|O64759|CAAT5_ARATH (e_value=0.0) Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1;; (*TAIR) AT2G34960.1 (e_value=0.0) | Symbols: CAT5 | cationic amino acid transporter 5 | chr2:14744175-14745884 REVERSE LENGTH=569;; (*ITAG) Solyc02g081850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40216887-40218847 transcript_region:SL2.40ch02:40216887..40218847+ go_terms:GO:0005289,GO:0015326 functional_description:"Amino acid transporter (AHRD V1 **** C2SWS0_BACCE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00029206g0006.1 protein AED:0.06 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|403; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=4e-72) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=1e-48) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=1e-49) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014710.2.1 (e_value=2e-168) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00029206g0005.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-25) hypothetical protein [Nicotiana tabacum]; NbC26114677g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.25|0|0.6|1|1|5|0|409; (*GB) gi|225437241|ref|XP_002275598.1| (e_value=2e-39) PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera];; (*SWP) sp|Q9M9Y4|DRIP1_ARATH (e_value=7e-33) E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2;; (*TAIR) AT1G06770.1 (e_value=5e-34) | Symbols: DRIP1 | DREB2A-interacting protein 1 | chr1:2079222-2081707 REVERSE LENGTH=421;; (*ITAG) Solyc09g083310.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64381854-64384291 transcript_region:SL2.40ch09:64381854..64384291- functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LC67_ARALY)"; NbS00011885g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.66|1|1|1|9|0|532; (*GB) gi|225452909|ref|XP_002278808.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245770 [Vitis vinifera];; (*TAIR) AT3G29180.2 (e_value=1e-165) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc03g065200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:37714532-37720423 transcript_region:SL2.40ch03:37714532..37720423+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 *--- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00011885g0009.1 protein AED:0.22 eAED:0.23 QI:305|0.72|0.75|1|0.63|0.58|12|521|925; (*GB) gi|225452911|ref|XP_002278818.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=7e-155) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G18670.1 (e_value=0.0) | Symbols: IBS1 | Protein kinase superfamily protein | chr1:6427242-6430696 REVERSE LENGTH=709;; (*ITAG) Solyc02g088330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45038385-45044855 transcript_region:SL2.40ch02:45038385..45044855- go_terms:GO:0016301 functional_description:"Cell division protein kinase 13 (AHRD V1 *-** CDK13_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00040811g0003.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|164; (*GB) gi|57013886|ref|YP_173360.1| (e_value=1e-63) cytochrome c maturation protein CcmC [Nicotiana tabacum];; (*SWP) sp|P92527|CCMC_ARATH (e_value=5e-48) Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMC PE=2 SV=4;; (*TAIR) AT2G07681.1 (e_value=2e-55) | Symbols: | Cytochrome C assembly protein | chr2:3287596-3292330 FORWARD LENGTH=736;; (*ITAG) Solyc12g035840.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29006530-29008560 transcript_region:SL2.40ch12:29006530..29008560+ go_terms:GO:0005840,GO:0016020 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 *-*- D3WBC0_9BORA); contains Interpro domain(s) IPR003557 Cytochrome c-type biogenesis protein CcmC "; GO:0005840,GO:0016020 NbS00010607g0020.1 protein AED:0.18 eAED:0.18 QI:270|0.88|0.7|1|0.88|1|10|0|365; (*GB) gi|14280354|gb|AAK57535.1| (e_value=0.0) branched-chain amino acid aminotransferase [Capsicum annuum];; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=3e-172) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=3e-173) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc07g021630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:20382871-20389446 transcript_region:SL2.40ch07:20382871..20389446- go_terms:GO:0004084 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 **** Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0004084 NbS00010607g0019.1 protein AED:0.24 eAED:0.24 QI:198|1|0.9|1|1|1|10|409|529; (*GB) gi|197253299|gb|ACH54085.1| (e_value=0.0) putative chlorophyll b reductase [Nicotiana tabacum];; (*SWP) sp|Q5N800|NYC1_ORYSJ (e_value=0.0) Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1;; (*TAIR) AT4G13250.1 (e_value=0.0) | Symbols: NYC1 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:7684417-7686691 REVERSE LENGTH=496;; (*ITAG) Solyc07g024000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23795954-23800624 transcript_region:SL2.40ch07:23795954..23800624+ go_terms:GO:0034256 functional_description:"Dehydrogenase/ reductase 3 (AHRD V1 *--* Q3INM6_NATPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0034256 NbS00010607g0023.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.25|1|0.33|0.5|4|188|194; (*GB) gi|357437717|ref|XP_003589134.1| (e_value=6e-70) Cysteine proteinase [Medicago truncatula];; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=4e-64) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT5G43060.1 (e_value=1e-64) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc04g078540.2.1 (e_value=6e-65) genomic_reference:SL2.40ch04 gene_region:60836302-60840029 transcript_region:SL2.40ch04:60836302..60840029- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00010607g0005.1 protein AED:0.01 eAED:0.01 QI:152|1|1|1|0.66|0.71|7|553|501; (*GB) gi|282154858|dbj|BAI60050.1| (e_value=0.0) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q9FE59|SUC4_ARATH (e_value=0.0) Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2;; (*TAIR) AT1G09960.1 (e_value=0.0) | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter 4 | chr1:3244258-3246718 FORWARD LENGTH=510;; (*ITAG) Solyc04g076960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59497251-59504210 transcript_region:SL2.40ch04:59497251..59504210- go_terms:GO:0008506 functional_description:"Sucrose transporter (AHRD V1 **** Q9FVJ6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00010607g0021.1 protein AED:0.11 eAED:0.11 QI:0|1|0.88|1|0.87|0.77|9|354|663; (*GB) gi|121308607|dbj|BAF43699.1| (e_value=0.0) PERK1-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc12g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1549690-1553261 transcript_region:SL2.40ch12:1549690..1553261+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00020678g0002.1 protein AED:0.21 eAED:0.31 QI:3|0.5|0.66|1|0|0.33|3|88|117; (*ITAG) Solyc05g051450.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:60925650-60926977 transcript_region:SL2.40ch05:60925650..60926977+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002394g0001.1 protein AED:0.09 eAED:0.09 QI:229|1|1|1|0.83|0.85|7|889|347; (*GB) gi|350539491|ref|NP_001233893.1| (e_value=0.0) fructokinase [Solanum lycopersicum];; (*SWP) sp|Q0JGZ6|SCRK1_ORYSJ (e_value=1e-146) Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2;; (*TAIR) AT5G51830.1 (e_value=0.0) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:21069709-21071450 FORWARD LENGTH=343;; (*ITAG) Solyc03g006860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1372758-1377406 transcript_region:SL2.40ch03:1372758..1377406- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase (AHRD V1 **-* O04897_SOLLC); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0008865,GO:0008959 NbS00004247g0003.1 protein AED:0.26 eAED:0.26 QI:141|0.77|0.7|1|0.66|0.5|10|257|332; (*GB) gi|221055759|ref|XP_002259018.1| (e_value=1e-34) N-ethylmaleimide-sensitive fusion protein [Plasmodium knowlesi strain H];; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=3e-32) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=2e-33) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=4e-33) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00015425g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|133|587; (*GB) gi|225444489|ref|XP_002273433.1| (e_value=0.0) PREDICTED: ankyrin repeat domain-containing protein 13C-A [Vitis vinifera];; (*SWP) sp|Q86YJ7|AN13B_HUMAN (e_value=1e-34) Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=2 SV=4;; (*TAIR) AT1G62050.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:22936323-22938874 REVERSE LENGTH=624;; (*ITAG) Solyc02g080610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39371268-39373522 transcript_region:SL2.40ch02:39371268..39373522- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 **** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00015425g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|224115748|ref|XP_002317115.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g080600.1.1 (e_value=4e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39369870-39370067 transcript_region:SL2.40ch02:39369870..39370067- functional_description:"Unknown Protein (AHRD V1)"; NbS00015425g0016.1 protein AED:0.08 eAED:0.08 QI:299|1|0.88|1|0.87|0.88|9|0|353; (*GB) gi|302144131|emb|CBI23236.3| (e_value=2e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SA96|AROD1_ARATH (e_value=9e-158) Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1;; (*TAIR) AT1G11790.1 (e_value=7e-159) | Symbols: ADT1 | arogenate dehydratase 1 | chr1:3981476-3984962 FORWARD LENGTH=392;; (*ITAG) Solyc02g080620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39383955-39391360 transcript_region:SL2.40ch02:39383955..39391360+ go_terms:GO:0047769 functional_description:"Prephenate dehydratase family protein (AHRD V1 **** D7KMI7_ARALY); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0047769 NbS00015425g0005.1 protein AED:0.15 eAED:0.15 QI:433|0.5|0.71|0.85|0.83|0.85|7|473|137; (*GB) gi|255554871|ref|XP_002518473.1| (e_value=7e-64) gaba(A) receptor-associated protein, putative [Ricinus communis];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=6e-65) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT1G62040.2 (e_value=3e-64) | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133;; (*ITAG) Solyc02g080590.2.1 (e_value=5e-68) genomic_reference:SL2.40ch02 gene_region:39366516-39369239 transcript_region:SL2.40ch02:39366516..39369239+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00015425g0015.1 protein AED:0.46 eAED:0.52 QI:25|0.5|0.33|1|0.5|0.33|3|0|62 NbS00007483g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|224062619|ref|XP_002300862.1| (e_value=8e-72) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g044970.1.1 (e_value=3e-114) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:55344792-55345433 transcript_region:SL2.40ch07:55344792..55345433+ go_terms:GO:0005524 functional_description:"ATP-binding protein (P-loop) (AHRD V1 *-*- Q81HR9_BACCR); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005524 NbS00007483g0004.1 protein AED:0.20 eAED:0.29 QI:0|0|0|1|0|0|3|0|143; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-43) hypothetical protein [Nicotiana tabacum]; NbS00007085g0018.1 protein AED:0.07 eAED:0.11 QI:5|0|0|0.9|0.66|0.6|10|0|857; (*GB) gi|255580219|ref|XP_002530940.1| (e_value=0.0) pumilio, putative [Ricinus communis];; (*SWP) sp|Q9SS47|PUM4_ARATH (e_value=5e-166) Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2;; (*TAIR) AT3G10360.1 (e_value=4e-167) | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3211276-3215144 REVERSE LENGTH=1003;; (*ITAG) Solyc11g008490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2668081-2673243 transcript_region:SL2.40ch11:2668081..2673243+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio-like (AHRD V1 *-*- Q6K9R1_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00007085g0016.1 protein AED:0.16 eAED:0.18 QI:0|0.85|0.5|1|0.85|1|8|0|663; (*GB) gi|296090475|emb|CBI40671.3| (e_value=6e-126) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16780.1 (e_value=2e-92) | Symbols: DOT2, MDF | SART-1 family | chr5:5517784-5521566 REVERSE LENGTH=820;; (*ITAG) Solyc11g008470.1.1 (e_value=1e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2660109-2664044 transcript_region:SL2.40ch11:2660109..2664044+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- B0WPY3_CULQU); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00007085g0002.1 protein AED:0.43 eAED:0.43 QI:0|0.75|0.4|0.8|1|1|5|0|259; (*GB) gi|225462520|ref|XP_002264268.1| (e_value=7e-130) PREDICTED: uncharacterized protein LOC100266959 [Vitis vinifera];; (*SWP) sp|O43290|SNUT1_HUMAN (e_value=9e-26) U4/U6.U5 tri-snRNP-associated protein 1 OS=Homo sapiens GN=SART1 PE=1 SV=1;; (*TAIR) AT5G16780.1 (e_value=1e-121) | Symbols: DOT2, MDF | SART-1 family | chr5:5517784-5521566 REVERSE LENGTH=820;; (*ITAG) Solyc11g008470.1.1 (e_value=2e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2660109-2664044 transcript_region:SL2.40ch11:2660109..2664044+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- B0WPY3_CULQU); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00034061g0004.1 protein AED:0.38 eAED:0.38 QI:58|1|0.75|1|1|1|4|0|177; (*GB) gi|76573357|gb|ABA46783.1| (e_value=2e-127) unknown [Solanum tuberosum];; (*SWP) sp|Q9ATF5|RL18A_CASSA (e_value=1e-120) 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1;; (*TAIR) AT2G34480.1 (e_value=6e-120) | Symbols: | Ribosomal protein L18ae/LX family protein | chr2:14532916-14534161 REVERSE LENGTH=178;; (*ITAG) Solyc02g070650.2.1 (e_value=3e-130) genomic_reference:SL2.40ch02 gene_region:34912165-34914546 transcript_region:SL2.40ch02:34912165..34914546+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae "; GO:0003735,GO:0005515 NbC26210937g0001.1 protein AED:0.62 eAED:0.66 QI:0|0|0.25|0.5|0|0|4|0|84; (*GB) gi|296085890|emb|CBI31214.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g088720.2.1 (e_value=4e-34) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00024265g0004.1 protein AED:0.17 eAED:0.17 QI:327|0.9|0.90|1|0.5|0.63|11|283|395; (*GB) gi|147833905|emb|CAN62190.1| (e_value=0.0) hypothetical protein VITISV_020113 [Vitis vinifera];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=2e-20) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT3G05910.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr3:1764509-1767240 REVERSE LENGTH=415;; (*ITAG) Solyc01g102350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82941604-82946739 transcript_region:SL2.40ch01:82941604..82946739- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbC25574684g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|138; (*GB) gi|255552169|ref|XP_002517129.1| (e_value=8e-18) Late embryogenesis abundant protein D-34, putative [Ricinus communis];; (*SWP) sp|P09444|LEA34_GOSHI (e_value=1e-17) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT1G03120.1 (e_value=7e-20) | Symbols: ATRAB28, RAB28 | responsive to abscisic acid 28 | chr1:752271-753140 FORWARD LENGTH=182;; (*ITAG) Solyc09g065360.2.1 (e_value=9e-32) genomic_reference:SL2.40ch09 gene_region:59053996-59063303 transcript_region:SL2.40ch09:59053996..59063303- functional_description:"Late embryogenesis abundant protein D-34 (AHRD V1 **-- B6UH67_MAIZE); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbS00035550g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.9|0.63|0.90|0.9|0.90|11|0|435; (*GB) gi|255565087|ref|XP_002523536.1| (e_value=9e-165) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT5G35180.1 (e_value=4e-154) | Symbols: | Protein of unknown function (DUF1336) | chr5:13424538-13432787 FORWARD LENGTH=778;; (*ITAG) Solyc07g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:16771-35135 transcript_region:SL2.40ch07:16771..35135+ go_terms:GO:0035091 functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *--- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0035091 NbC25866454g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0.5|2|0|68; (*GB) gi|131053151|gb|ABO32691.1| (e_value=5e-40) ACC oxidase ACO3 [Nicotiana attenuata];; (*SWP) sp|P31237|ACCO_ACTDE (e_value=2e-35) 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1;; (*TAIR) AT1G05010.1 (e_value=2e-33) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc02g036350.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:21279767-21281954 transcript_region:SL2.40ch02:21279767..21281954+ go_terms:GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- A4ZYQ6_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00003606g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|1|1|4|0|251; (*GB) gi|225463460|ref|XP_002276135.1| (e_value=1e-138) PREDICTED: uncharacterized protein At2g34460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8H124|Y2446_ARATH (e_value=9e-125) Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1;; (*TAIR) AT2G34460.1 (e_value=7e-126) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14529635-14530732 FORWARD LENGTH=280;; (*ITAG) Solyc02g070760.2.1 (e_value=6e-168) genomic_reference:SL2.40ch02 gene_region:34956175-34960025 transcript_region:SL2.40ch02:34956175..34960025- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B0CAN3_ACAM1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00019367g0014.1 protein AED:0.20 eAED:0.25 QI:0|0.64|0.53|1|0.71|0.66|15|300|905; (*GB) gi|24461867|gb|AAN62354.1|AF506028_23 (e_value=5e-148) CTV.22 [Citrus trifoliata];; (*TAIR) AT1G15780.1 (e_value=3e-106) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335;; (*ITAG) Solyc04g009500.2.1 (e_value=1e-143) genomic_reference:SL2.40ch04 gene_region:2915852-2927412 transcript_region:SL2.40ch04:2915852..2927412+ go_terms:GO:0006355 functional_description:"CTV.22 (AHRD V1 *-*- Q8H6Q7_PONTR); contains Interpro domain(s) IPR003101 Coactivator CBP, KIX "; GO:0006355 NbS00019367g0016.1 protein AED:0.34 eAED:0.34 QI:139|0.92|0.92|1|0.61|0.57|14|1269|382; (*GB) gi|311780299|gb|ADQ08688.1| (e_value=0.0) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q9C598|NAC81_ARATH (e_value=1e-113) Protein ATAF2 OS=Arabidopsis thaliana GN=NAC081 PE=1 SV=1;; (*TAIR) AT5G08790.1 (e_value=8e-115) | Symbols: ATAF2, anac081 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr5:2859113-2860144 REVERSE LENGTH=283;; (*ITAG) Solyc04g009440.2.1 (e_value=6e-177) genomic_reference:SL2.40ch04 gene_region:2856469-2858639 transcript_region:SL2.40ch04:2856469..2858639+ go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein (AHRD V1 ***- Q6RH27_SOLLC); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00019367g0017.1 protein AED:0.45 eAED:0.50 QI:0|0|0.33|1|0|0|3|100|232; (*GB) gi|255578926|ref|XP_002530316.1| (e_value=3e-47) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT3G53690.1 (e_value=3e-35) | Symbols: | RING/U-box superfamily protein | chr3:19898997-19900044 REVERSE LENGTH=320;; (*ITAG) Solyc01g110100.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:88644859-88648051 transcript_region:SL2.40ch01:88644859..88648051+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00052538g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|528; (*GB) gi|255540265|ref|XP_002511197.1| (e_value=0.0) brg-1 associated factor, putative [Ricinus communis];; (*SWP) sp|Q9FMT4|SNF12_ARATH (e_value=7e-176) SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1;; (*TAIR) AT5G14170.1 (e_value=5e-177) | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein | chr5:4568696-4570444 REVERSE LENGTH=534;; (*ITAG) Solyc03g111250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55916730-55920194 transcript_region:SL2.40ch03:55916730..55920194+ go_terms:GO:0003713 functional_description:"SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily d member 1 (AHRD V1 ***- Q6GL18_XENTR); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0003713 NbS00005137g0001.1 protein AED:0.03 eAED:0.11 QI:27|-1|0|1|-1|1|1|0|120; (*GB) gi|356497299|ref|XP_003517498.1| (e_value=2e-56) PREDICTED: lysine histidine transporter 1-like [Glycine max];; (*SWP) sp|Q9C733|LHTL1_ARATH (e_value=8e-12) Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2;; (*TAIR) AT5G41800.1 (e_value=2e-57) | Symbols: | Transmembrane amino acid transporter family protein | chr5:16733842-16735888 FORWARD LENGTH=452;; (*ITAG) Solyc08g082080.2.1 (e_value=3e-64) genomic_reference:SL2.40ch08 gene_region:62143392-62149197 transcript_region:SL2.40ch08:62143392..62149197+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** Q8GZV5_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00005137g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|250; (*GB) gi|225470636|ref|XP_002266137.1| (e_value=7e-90) PREDICTED: LOB domain-containing protein 6 [Vitis vinifera];; (*SWP) sp|O04479|LBD6_ARATH (e_value=5e-75) LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1;; (*TAIR) AT1G65620.4 (e_value=4e-76) | Symbols: AS2 | Lateral organ boundaries (LOB) domain family protein | chr1:24400146-24400745 FORWARD LENGTH=199;; (*ITAG) Solyc11g008830.1.1 (e_value=4e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3019777-3021109 transcript_region:SL2.40ch11:3019777..3021109+ functional_description:"LOB domain protein (AHRD V1 *-*- Q9AS62_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00009057g0003.1 protein AED:0.15 eAED:0.15 QI:333|0|1|1|1|1|2|355|258; (*GB) gi|90991353|dbj|BAE93057.1| (e_value=3e-88) cyclin [Nicotiana tabacum];; (*SWP) sp|P42753|CCD31_ARATH (e_value=2e-29) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=1e-30) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc01g107730.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:86939706-86941587 transcript_region:SL2.40ch01:86939706..86941587- go_terms:GO:0046982,GO:0005516 functional_description:"Cyclin (AHRD V1 ***- Q1XGF1_TOBAC); contains Interpro domain(s) IPR006671 Cyclin, N-terminal "; GO:0046982,GO:0005516 NbS00009057g0008.1 protein AED:0.16 eAED:0.16 QI:406|1|1|1|0.85|0.75|8|537|238; (*GB) gi|239835409|dbj|BAH78126.1| (e_value=2e-100) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT4G34150.1 (e_value=1e-69) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:16355035-16356955 FORWARD LENGTH=247;; (*ITAG) Solyc01g107740.2.1 (e_value=2e-91) genomic_reference:SL2.40ch01 gene_region:86945729-86948859 transcript_region:SL2.40ch01:86945729..86948859- functional_description:"Protein unc-13 homolog C (AHRD V1 *--- UN13C_MOUSE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00009057g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.25|0|0.6|1|1|5|0|351; (*GB) gi|146216000|gb|ABQ10202.1| (e_value=3e-96) cysteine protease Cp4 [Actinidia deliciosa];; (*SWP) sp|P43297|RD21A_ARATH (e_value=1e-92) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT1G47128.1 (e_value=1e-93) | Symbols: RD21, RD21A | Granulin repeat cysteine protease family protein | chr1:17283139-17285609 REVERSE LENGTH=462;; (*ITAG) Solyc01g107760.2.1 (e_value=3e-116) genomic_reference:SL2.40ch01 gene_region:86959457-86961934 transcript_region:SL2.40ch01:86959457..86961934- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00009579g0010.1 protein AED:0.07 eAED:0.07 QI:240|0.66|0.75|1|0.33|0.25|4|422|759; (*GB) gi|147811098|emb|CAN70168.1| (e_value=4e-119) hypothetical protein VITISV_006870 [Vitis vinifera];; (*TAIR) AT5G59020.1 (e_value=1e-72) | Symbols: | Protein of unknown function (DUF3527) | chr5:23827160-23829603 REVERSE LENGTH=780;; (*ITAG) Solyc06g076590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43959867-43962486 transcript_region:SL2.40ch06:43959867..43962486+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009579g0009.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.5|2|0|290; (*GB) gi|300827456|gb|ADK36668.1| (e_value=4e-79) cytosolic class I small heat shock protein 3B [Nicotiana tabacum];; (*SWP) sp|O82012|HSP12_SOLPE (e_value=2e-72) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT1G07400.1 (e_value=5e-64) | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157;; (*ITAG) Solyc06g076560.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43949614-43950078 transcript_region:SL2.40ch06:43949614..43950078+ go_terms:GO:0051082 functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00026997g0001.1 protein AED:0.40 eAED:0.63 QI:20|0|0|1|1|1|2|79|79 NbS00027231g0004.1 protein AED:0.19 eAED:0.21 QI:0|0.25|0|1|0.75|0.6|5|0|171; (*GB) gi|77745477|gb|ABB02637.1| (e_value=3e-80) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=3e-18) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1;; (*TAIR) AT3G25160.1 (e_value=4e-65) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc09g059270.2.1 (e_value=2e-82) genomic_reference:SL2.40ch09 gene_region:49758568-49762279 transcript_region:SL2.40ch09:49758568..49762279+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00040540g0006.1 protein AED:0.09 eAED:0.09 QI:494|1|1|1|0|0|6|373|88; (*GB) gi|255562972|ref|XP_002522491.1| (e_value=2e-46) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q54ND3|UXT_DICDI (e_value=4e-22) Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389 PE=3 SV=1;; (*TAIR) AT1G26660.1 (e_value=1e-32) | Symbols: | Prefoldin chaperone subunit family protein | chr1:9212298-9213765 FORWARD LENGTH=152;; (*ITAG) Solyc05g012930.2.1 (e_value=5e-53) genomic_reference:SL2.40ch05 gene_region:6049696-6053668 transcript_region:SL2.40ch05:6049696..6053668+ go_terms:GO:0048487 functional_description:"Protein UXT (AHRD V1 ***- B6TWV7_MAIZE); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0048487 NbS00040540g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.90|0.75|1|0.81|0.66|12|0|353; (*GB) gi|225429900|ref|XP_002281078.1| (e_value=1e-125) PREDICTED: ribonuclease H2 subunit B [Vitis vinifera];; (*SWP) sp|Q5HZP1|RNH2B_XENLA (e_value=2e-16) Ribonuclease H2 subunit B OS=Xenopus laevis GN=rnaseh2b PE=2 SV=1;; (*TAIR) AT4G20325.1 (e_value=5e-108) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10980124-10982426 FORWARD LENGTH=277;; (*ITAG) Solyc05g012940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6054328-6059886 transcript_region:SL2.40ch05:6054328..6059886+ go_terms:GO:0005634 functional_description:"Ribonuclease H2 subunit B (AHRD V1 ***- B0WCS6_CULQU); contains Interpro domain(s) IPR019024 Ribonuclease H2, subunit B "; GO:0005634 NbS00040540g0008.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.33|3|0|232; (*GB) gi|359473025|ref|XP_003631233.1| (e_value=4e-87) PREDICTED: uncharacterized protein LOC100266416 [Vitis vinifera];; (*TAIR) AT1G13530.1 (e_value=5e-55) | Symbols: | Protein of unknown function (DUF1262) | chr1:4633740-4635129 REVERSE LENGTH=385;; (*ITAG) Solyc05g010460.2.1 (e_value=4e-115) genomic_reference:SL2.40ch05 gene_region:4703441-4705121 transcript_region:SL2.40ch05:4703441..4705121- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00040540g0007.1 protein AED:0.39 eAED:0.80 QI:0|0|0|1|0|0|2|0|87; (*GB) gi|224101603|ref|XP_002312349.1| (e_value=8e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g010470.2.1 (e_value=4e-35) genomic_reference:SL2.40ch05 gene_region:4706112-4707923 transcript_region:SL2.40ch05:4706112..4707923- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00008279g0010.1 protein AED:0.02 eAED:0.03 QI:309|1|0.8|1|0.75|1|5|0|274; (*GB) gi|257831437|gb|ACV71019.1| (e_value=7e-134) UPA19 [Capsicum annuum];; (*SWP) sp|Q96SZ5|AEDO_HUMAN (e_value=2e-20) 2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2;; (*TAIR) AT5G39890.1 (e_value=1e-100) | Symbols: | Protein of unknown function (DUF1637) | chr5:15974543-15976013 FORWARD LENGTH=276;; (*ITAG) Solyc02g087740.2.1 (e_value=2e-162) genomic_reference:SL2.40ch02 gene_region:44629695-44632575 transcript_region:SL2.40ch02:44629695..44632575+ go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B4F886_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00008279g0003.1 protein AED:0.18 eAED:0.18 QI:299|0.8|0.66|1|0.8|0.83|6|0|547; (*GB) gi|225452729|ref|XP_002277259.1| (e_value=9e-146) PREDICTED: protein IQ-DOMAIN 31-like [Vitis vinifera];; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=1e-83) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G74690.1 (e_value=8e-85) | Symbols: IQD31 | IQ-domain 31 | chr1:28061498-28063924 REVERSE LENGTH=587;; (*ITAG) Solyc02g087760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44643248-44648496 transcript_region:SL2.40ch02:44643248..44648496+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6U6R2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00008279g0011.1 protein AED:0.30 eAED:0.31 QI:14|0.75|1|1|0.5|0.6|5|1112|131; (*GB) gi|195616436|gb|ACG30048.1| (e_value=4e-56) hypothetical protein [Zea mays];; (*SWP) sp|P25866|UBC2_WHEAT (e_value=7e-54) Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1;; (*TAIR) AT2G02760.1 (e_value=2e-54) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc02g087750.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:44634950-44640059 transcript_region:SL2.40ch02:44634950..44640059+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 ***- UBC2_WHEAT); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00023476g0003.1 protein AED:0.44 eAED:0.84 QI:0|0|0|0.75|1|1|4|0|105; (*GB) gi|356570212|ref|XP_003553284.1| (e_value=3e-43) PREDICTED: nicotinamide mononucleotide adenylyltransferase 1-like [Glycine max];; (*SWP) sp|Q9HAN9|NMNA1_HUMAN (e_value=2e-24) Nicotinamide mononucleotide adenylyltransferase 1 OS=Homo sapiens GN=NMNAT1 PE=1 SV=1;; (*TAIR) AT5G55810.2 (e_value=6e-44) | Symbols: NMNAT | nicotinate/nicotinamide mononucleotide adenyltransferase | chr5:22584229-22586239 REVERSE LENGTH=264;; (*ITAG) Solyc07g065590.2.1 (e_value=2e-59) genomic_reference:SL2.40ch07 gene_region:64511859-64515895 transcript_region:SL2.40ch07:64511859..64515895- go_terms:GO:0004515 functional_description:"Nicotinamide mononucleotide adenylyltransferase 1 (AHRD V1 **** C1BT21_9MAXI); contains Interpro domain(s) IPR005248 Probable nicotinate-nucleotide adenylyltransferase "; GO:0004515 NbS00002723g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=1e-26) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g005980.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3916175-3916960 transcript_region:SL2.40ch00:3916175..3916960+ functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00002723g0015.1 protein AED:0.39 eAED:0.39 QI:333|0.66|0.71|1|0.5|0.71|7|778|279; (*GB) gi|359473869|ref|XP_002267334.2| (e_value=2e-108) PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9JLZ3|AUHM_MOUSE (e_value=8e-55) Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1;; (*TAIR) AT4G16800.1 (e_value=3e-87) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:9454931-9457000 REVERSE LENGTH=301;; (*ITAG) Solyc08g078130.2.1 (e_value=3e-151) genomic_reference:SL2.40ch08 gene_region:59130801-59134936 transcript_region:SL2.40ch08:59130801..59134936+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 *-*- FADJ_VIBCH); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00002723g0014.1 protein AED:0.43 eAED:0.44 QI:110|0.85|0.75|1|0.71|1|8|286|278; (*GB) gi|224071175|ref|XP_002303369.1| (e_value=8e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2TBG8|UCHL3_BOVIN (e_value=1e-52) Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1;; (*TAIR) AT4G17510.1 (e_value=5e-98) | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234;; (*ITAG) Solyc06g060850.2.1 (e_value=3e-115) genomic_reference:SL2.40ch06 gene_region:35259703-35265324 transcript_region:SL2.40ch06:35259703..35265324- go_terms:GO:0004843,GO:0004221 functional_description:"Ubiquitin carboxyl-terminal hydrolase isozyme L3 (AHRD V1 **** B6T8R6_MAIZE); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0004843,GO:0004221 NbS00002723g0016.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|0.5|2|0|136; (*GB) gi|61658204|gb|AAX49392.1| (e_value=9e-45) OLE-4 [Coffea canephora];; (*SWP) sp|Q42980|OLEO1_ORYSJ (e_value=2e-29) Oleosin 16 kDa OS=Oryza sativa subsp. japonica GN=OLE16 PE=2 SV=2;; (*TAIR) AT5G51210.1 (e_value=1e-26) | Symbols: OLEO3 | oleosin3 | chr5:20820171-20820706 FORWARD LENGTH=141;; (*ITAG) Solyc06g060840.1.1 (e_value=9e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35259037-35259441 transcript_region:SL2.40ch06:35259037..35259441+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q2TM28_COFCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00002723g0011.1 protein AED:0.60 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|73; (*GB) gi|123620|sp|P27322.1|HSP72_SOLLC (e_value=3e-13) RecName: Full=Heat shock cognate 70 kDa protein 2;; (*SWP) sp|P27322|HSP72_SOLLC (e_value=1e-14) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*ITAG) Solyc10g086410.2.1 (e_value=6e-16) genomic_reference:SL2.40ch10 gene_region:64561395-64564764 transcript_region:SL2.40ch10:64561395..64564764+ go_terms:GO:0051082 functional_description:"Heat shock protein 70-3 (AHRD V1 ***- Q67BD0_TOBAC); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbC26106323g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|0.66|0|0|3|0|75 NbS00008914g0009.1 protein AED:0.21 eAED:0.24 QI:0|0.72|0.58|1|0.72|0.5|12|443|1074; (*GB) gi|356536756|ref|XP_003536901.1| (e_value=4e-125) PREDICTED: uncharacterized protein LOC100803427 [Glycine max];; (*TAIR) AT3G63070.1 (e_value=7e-78) | Symbols: | Tudor/PWWP/MBT domain-containing protein | chr3:23302667-23309575 FORWARD LENGTH=1347;; (*ITAG) Solyc09g064840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57898206-57912501 transcript_region:SL2.40ch09:57898206..57912501+ functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--- C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; NbS00008914g0010.1 protein AED:0.38 eAED:0.39 QI:326|0.5|0.33|1|0.5|1|3|0|397; (*GB) gi|225436958|ref|XP_002271866.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100261323 [Vitis vinifera];; (*TAIR) AT2G48160.1 (e_value=3e-51) | Symbols: | Tudor/PWWP/MBT domain-containing protein | chr2:19689784-19696584 REVERSE LENGTH=1366;; (*ITAG) Solyc09g064840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57898206-57912501 transcript_region:SL2.40ch09:57898206..57912501+ functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--- C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; NbS00008914g0004.1 protein AED:0.63 eAED:0.70 QI:0|0|0.2|0.6|1|1|5|28|140; (*GB) gi|351725897|ref|NP_001238132.1| (e_value=2e-72) uncharacterized protein LOC100306136 [Glycine max];; (*SWP) sp|Q8L910|GPX4_ARATH (e_value=1e-67) Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1;; (*TAIR) AT2G48150.1 (e_value=8e-69) | Symbols: ATGPX4, GPX4 | glutathione peroxidase 4 | chr2:19688109-19689099 REVERSE LENGTH=170;; (*ITAG) Solyc09g064850.2.1 (e_value=6e-83) genomic_reference:SL2.40ch09 gene_region:57914680-57927124 transcript_region:SL2.40ch09:57914680..57927124+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9T4A6_RICCO); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00006152g0010.1 protein AED:0.25 eAED:0.25 QI:27|1|1|1|0.75|0.8|5|211|395; (*GB) gi|255547550|ref|XP_002514832.1| (e_value=6e-137) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G65230.1 (e_value=8e-122) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr1:24229167-24230764 FORWARD LENGTH=286;; (*ITAG) Solyc04g056580.2.1 (e_value=2e-156) genomic_reference:SL2.40ch04 gene_region:53690198-53692659 transcript_region:SL2.40ch04:53690198..53692659+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YK5_OSTTA)"; NbS00006152g0012.1 protein AED:0.31 eAED:0.32 QI:0|1|0.6|1|1|1|5|0|492; (*GB) gi|255547560|ref|XP_002514837.1| (e_value=0.0) protein phosphatase-2c, putative [Ricinus communis];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=0.0) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc04g056560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53677858-53684598 transcript_region:SL2.40ch04:53677858..53684598+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- Q4L0F8_MEDSA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00006152g0004.1 protein AED:0.33 eAED:0.36 QI:1248|0.57|0.75|1|0.71|0.5|8|525|268; (*GB) gi|255547548|ref|XP_002514831.1| (e_value=2e-89) Aspartic proteinase Asp1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=5e-62) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=2e-78) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc04g056590.2.1 (e_value=3e-130) genomic_reference:SL2.40ch04 gene_region:53693242-53702994 transcript_region:SL2.40ch04:53693242..53702994- go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7KF83_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00029131g0004.1 protein AED:0.27 eAED:0.27 QI:0|1|0.8|1|1|1|5|384|397; (*GB) gi|48209875|gb|AAT40481.1| (e_value=0.0) putative protein kinase [Solanum demissum];; (*SWP) sp|O49840|APK2B_ARATH (e_value=0.0) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=0.0) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc05g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1733186-1736871 transcript_region:SL2.40ch05:1733186..1736871- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00029131g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|113; (*GB) gi|255626575|gb|ACU13632.1| (e_value=6e-14) unknown [Glycine max];; (*TAIR) AT1G26800.1 (e_value=6e-13) | Symbols: | RING/U-box superfamily protein | chr1:9285576-9286190 REVERSE LENGTH=204;; (*ITAG) Solyc10g052480.1.1 (e_value=7e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:48285453-48286136 transcript_region:SL2.40ch10:48285453..48286136- go_terms:GO:0008270 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00009970g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.55|0.6|10|299|381; (*GB) gi|297740764|emb|CBI30946.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74545|YCV6_SCHPO (e_value=5e-38) Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=2 SV=1;; (*TAIR) AT1G30300.1 (e_value=0.0) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:10673084-10675061 FORWARD LENGTH=324;; (*ITAG) Solyc08g023500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16931268-16942383 transcript_region:SL2.40ch08:16931268..16942383+ go_terms:GO:0003824 functional_description:"Metal-dependent hydrolase beta-lactamase family (AHRD V1 **-- Q26E97_FLABB); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00009970g0101.1 protein AED:0.13 eAED:0.28 QI:333|0|0|1|1|1|5|0|576 NbS00009970g0110.1 protein AED:0.26 eAED:0.38 QI:0|0|0.5|1|0|0.5|2|189|66 NbS00009970g0109.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|791 NbS00003889g0004.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.6|1|1|5|0|562; (*GB) gi|302142472|emb|CBI19675.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FRK5|Y1514_ARATH (e_value=4e-156) Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana GN=At1g75140 PE=1 SV=3;; (*TAIR) AT1G75140.1 (e_value=3e-157) | Symbols: | unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28202166-28204019 REVERSE LENGTH=617;; (*ITAG) Solyc04g080180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62036685-62038604 transcript_region:SL2.40ch04:62036685..62038604- functional_description:"Uncharacterized membrane protein At1g75140 (AHRD V1 ***- Y1514_ARATH); contains Interpro domain(s) IPR011044 Quinoprotein amine dehydrogenase, beta chain-like "; NbS00003889g0008.1 protein AED:0.45 eAED:0.46 QI:0|0|0|0.37|0.71|0.62|8|0|322; (*ITAG) Solyc10g049480.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00024269g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.75|1|1|1|12|0|930; (*GB) gi|225439759|ref|XP_002273255.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8GYL7|PP361_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3;; (*TAIR) AT5G02830.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:644458-648421 REVERSE LENGTH=852;; (*ITAG) Solyc09g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:817262-827184 transcript_region:SL2.40ch09:817262..827184+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024269g0007.1 protein AED:0.69 eAED:0.81 QI:0|0|0|0.33|1|1|3|0|63 NbS00024269g0015.1 protein AED:0.01 eAED:0.01 QI:30|1|1|1|0|0|2|141|435; (*GB) gi|297741485|emb|CBI32617.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZ03|TOP6A_ARATH (e_value=0.0) DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1 SV=1;; (*TAIR) AT5G02820.1 (e_value=0.0) | Symbols: RHL2, BIN5 | Spo11/DNA topoisomerase VI, subunit A protein | chr5:642658-644123 FORWARD LENGTH=427;; (*ITAG) Solyc09g007210.2.1 (e_value=2e-131) genomic_reference:SL2.40ch09 gene_region:827489-828966 transcript_region:SL2.40ch09:827489..828966- go_terms:GO:0042802,GO:0003918 functional_description:"DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** D6GWL5_9EURY); contains Interpro domain(s) IPR004085 DNA topoisomerase VI, subunit A "; GO:0042802,GO:0003918 NbS00024269g0014.1 protein AED:0.28 eAED:0.30 QI:233|0.85|0.87|1|0.85|0.87|8|0|312; (*GB) gi|255568442|ref|XP_002525195.1| (e_value=4e-161) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q0JHZ2|C3H11_ORYSJ (e_value=9e-152) Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2;; (*TAIR) AT2G20280.1 (e_value=3e-144) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:8740054-8742349 REVERSE LENGTH=371;; (*ITAG) Solyc09g007230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:832874-838682 transcript_region:SL2.40ch09:832874..838682+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 15 (AHRD V1 *-*- B9ELB3_SALSA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00014107g0011.1 protein AED:0.10 eAED:0.11 QI:115|1|0.66|1|0|0.66|3|0|417; (*GB) gi|297738233|emb|CBI27434.3| (e_value=2e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-57) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-58) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=1e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00014107g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|111073735|dbj|BAF02556.1| (e_value=3e-57) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G19020.1 (e_value=9e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6568142-6568402 FORWARD LENGTH=86;; (*ITAG) Solyc05g006390.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:1028793-1029047 transcript_region:SL2.40ch05:1028793..1029047- functional_description:"Unknown Protein (AHRD V1)"; NbS00014107g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|111073735|dbj|BAF02556.1| (e_value=3e-33) hypothetical protein [Nicotiana benthamiana];; (*ITAG) Solyc05g006390.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:1028793-1029047 transcript_region:SL2.40ch05:1028793..1029047- functional_description:"Unknown Protein (AHRD V1)"; NbS00060470g0004.1 protein AED:0.04 eAED:0.05 QI:0|0.8|0.5|1|1|1|6|0|498; (*GB) gi|13183177|gb|AAK15089.1|AF240006_1 (e_value=0.0) 7S globulin [Sesamum indicum];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=3e-130) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT3G22640.1 (e_value=2e-72) | Symbols: PAP85 | cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486;; (*ITAG) Solyc09g065470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59169265-59174553 transcript_region:SL2.40ch09:59169265..59174553+ go_terms:GO:0045735,GO:0008152 functional_description:"Vicilin (Fragment) (AHRD V1 **-- B4X640_PISVE); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0008152 NbS00028027g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0|2|820|463; (*GB) gi|359481504|ref|XP_002274656.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g42450, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIH2|PP414_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g42450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E102 PE=2 SV=1;; (*TAIR) AT5G42450.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:16977297-16978850 FORWARD LENGTH=517;; (*ITAG) Solyc09g005710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:496090-497586 transcript_region:SL2.40ch09:496090..497586+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00028027g0015.1 protein AED:0.27 eAED:0.27 QI:111|1|1|1|0.25|0|5|528|94; (*GB) gi|585876|sp|Q07761.1|RL23A_TOBAC (e_value=2e-47) RecName: Full=60S ribosomal protein L23a; AltName: Full=L25;; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=5e-49) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=2e-30) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc09g005720.2.1 (e_value=6e-45) genomic_reference:SL2.40ch09 gene_region:498274-500367 transcript_region:SL2.40ch09:498274..500367- go_terms:GO:0003735,GO:0019843 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR001014 Ribosomal protein L23/L25, conserved site "; GO:0003735,GO:0019843 NbS00028027g0014.1 protein AED:0.32 eAED:0.35 QI:272|0.6|0.63|1|0.8|0.90|11|0|518; (*GB) gi|225439868|ref|XP_002278566.1| (e_value=6e-101) PREDICTED: diaminopimelate epimerase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LFG2|DAPF_ARATH (e_value=3e-93) Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1;; (*TAIR) AT3G53580.1 (e_value=2e-94) | Symbols: | diaminopimelate epimerase family protein | chr3:19864784-19866907 FORWARD LENGTH=362;; (*ITAG) Solyc09g005700.2.1 (e_value=8e-115) genomic_reference:SL2.40ch09 gene_region:488084-495891 transcript_region:SL2.40ch09:488084..495891- go_terms:GO:0008837 functional_description:"Diaminopimelate epimerase family protein (AHRD V1 **** D7LUJ8_ARALY); contains Interpro domain(s) IPR001653 Diaminopimelate epimerase "; GO:0008837 NbS00021974g0003.1 protein AED:0.46 eAED:0.46 QI:250|0|0.25|0.25|1|1|4|0|94; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=1e-13) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*ITAG) Solyc11g072940.1.1 (e_value=8e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53178457-53185286 transcript_region:SL2.40ch11:53178457..53185286+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00023062g0015.1 protein AED:0.22 eAED:0.22 QI:738|0.85|0.87|1|0.42|0.12|8|225|707; (*GB) gi|297851594|ref|XP_002893678.1| (e_value=0.0) hypothetical protein ARALYDRAFT_336243 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O64769|POT11_ARATH (e_value=2e-174) Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=1 SV=1;; (*TAIR) AT2G35060.1 (e_value=2e-175) | Symbols: KUP11 | K+ uptake permease 11 | chr2:14775184-14778184 REVERSE LENGTH=792;; (*ITAG) Solyc02g068590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33122412-33131345 transcript_region:SL2.40ch02:33122412..33131345- go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** A9STU4_PHYPA); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00023062g0018.1 protein AED:0.17 eAED:0.18 QI:0|0.62|0.33|0.88|0.75|0.77|9|0|1301; (*GB) gi|359472758|ref|XP_002276237.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242423 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=4e-46) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G79570.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:29932856-29937540 REVERSE LENGTH=1248;; (*ITAG) Solyc02g031860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00024878g0016.1 protein AED:0.00 eAED:0.00 QI:172|1|1|1|1|1|2|581|98; (*GB) gi|255549960|ref|XP_002516031.1| (e_value=4e-60) cytoplasmic dynein light chain, putative [Ricinus communis];; (*SWP) sp|O02414|DYL1_ANTCR (e_value=7e-25) Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1;; (*TAIR) AT1G52240.2 (e_value=7e-56) | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-nucleotide exchange factor 11 | chr1:19458844-19459235 REVERSE LENGTH=94;; (*ITAG) Solyc12g044240.1.1 (e_value=1e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44589739-44590138 transcript_region:SL2.40ch12:44589739..44590138+ go_terms:GO:0042803 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 ***- C1C420_RANCA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00024878g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|330; (*GB) gi|356538160|ref|XP_003537572.1| (e_value=2e-93) PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Glycine max];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=6e-82) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT4G38150.2 (e_value=5e-83) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17901211-17902119 REVERSE LENGTH=302;; (*ITAG) Solyc12g096140.1.1 (e_value=2e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63520457-63521479 transcript_region:SL2.40ch12:63520457..63521479- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024878g0019.1 protein AED:0.18 eAED:0.18 QI:622|0.7|0.90|1|0.3|0.54|11|176|383; (*GB) gi|255549968|ref|XP_002516035.1| (e_value=2e-114) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25737.1 (e_value=8e-94) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc12g044230.1.1 (e_value=4e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44578159-44581444 transcript_region:SL2.40ch12:44578159..44581444+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00024878g0017.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|231|313; (*GB) gi|255549958|ref|XP_002516030.1| (e_value=7e-128) glycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q5JEZ2|GYAR_PYRKO (e_value=3e-41) Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=4e-119) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc12g044250.1.1 (e_value=7e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44591173-44593253 transcript_region:SL2.40ch12:44591173..44593253- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **-- GHRB_ERWT9); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00024878g0018.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|181|297; (*GB) gi|305379592|gb|ADM48810.1| (e_value=2e-136) hydroxyphenylpyruvate reductase [Perilla frutescens];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=3e-40) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT1G79870.1 (e_value=4e-127) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc12g044260.1.1 (e_value=3e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44601637-44602819 transcript_region:SL2.40ch12:44601637..44602819- go_terms:GO:0008152,GO:0048037 functional_description:"D-isomer specific 2-hydroxyacid dehydrogenase (AHRD V1 **-- A8IB71_AZOC5); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00054346g0004.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|0|0|3|0|399; (*GB) gi|190607491|gb|ACE79408.1| (e_value=1e-130) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=7e-43) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-44) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g074250.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55526270-55528885 transcript_region:SL2.40ch08:55526270..55528885- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00028300g0005.1 protein AED:0.04 eAED:0.05 QI:705|1|0.75|1|0.66|0.5|4|0|425; (*GB) gi|225432856|ref|XP_002283882.1| (e_value=3e-146) PREDICTED: uncharacterized protein LOC100251040 isoform 1 [Vitis vinifera];; (*TAIR) AT3G22970.1 (e_value=4e-110) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc09g082980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64071758-64073514 transcript_region:SL2.40ch09:64071758..64073514+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6TMA8_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00028300g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|57014003|ref|YP_173474.1| (e_value=4e-50) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT1G22650.1 (e_value=3e-28) | Symbols: | Plant neutral invertase family protein | chr1:8013529-8015647 REVERSE LENGTH=534;; (*ITAG) Solyc04g081440.2.1 (e_value=6e-28) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00028300g0007.1 protein AED:0.35 eAED:0.84 QI:0|0|0|1|0|0|5|0|130 NbS00029155g0007.1 protein AED:0.24 eAED:0.29 QI:0|0.5|0.33|1|0.5|0.33|3|0|136; (*GB) gi|147826480|emb|CAN70655.1| (e_value=3e-55) hypothetical protein VITISV_005696 [Vitis vinifera];; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=3e-40) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G24310.1 (e_value=4e-55) | Symbols: MYB305, ATMYB71 | myb domain protein 305 | chr3:8811336-8812330 REVERSE LENGTH=269;; (*ITAG) Solyc09g090790.2.1 (e_value=5e-58) genomic_reference:SL2.40ch09 gene_region:65552080-65553197 transcript_region:SL2.40ch09:65552080..65553197- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6QAD8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00029155g0006.1 protein AED:0.31 eAED:0.36 QI:0|0.66|0.8|1|0.55|0.6|10|242|379; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=0.0) D1 protease precursor [Nicotiana plumbaginifolia];; (*SWP) sp|P42784|CTPA_SYNP2 (e_value=8e-73) Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2;; (*TAIR) AT4G17740.2 (e_value=0.0) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00010132g0002.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|1|1|2|0|174; (*GB) gi|225464604|ref|XP_002274943.1| (e_value=1e-46) PREDICTED: uncharacterized LOC100266405 [Vitis vinifera];; (*SWP) sp|Q9LTD9|Y5278_ARATH (e_value=1e-31) Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1;; (*TAIR) AT5G52780.1 (e_value=8e-33) | Symbols: | Protein of unknown function (DUF3464) | chr5:21390943-21391449 REVERSE LENGTH=168;; (*ITAG) Solyc03g007860.1.1 (e_value=3e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:2393132-2393689 transcript_region:SL2.40ch03:2393132..2393689+ functional_description:"ABC-type Co2+ transport system permease component (AHRD V1 *--- B6U434_MAIZE)"; NbS00029060g0017.1 protein AED:0.00 eAED:0.00 QI:168|1|1|1|1|1|2|419|364; (*GB) gi|225440558|ref|XP_002276375.1| (e_value=2e-136) PREDICTED: uncharacterized protein LOC100256309 [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=2e-50) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT3G09230.1 (e_value=1e-93) | Symbols: AtMYB1, MYB1 | myb domain protein 1 | chr3:2833460-2835134 FORWARD LENGTH=393;; (*ITAG) Solyc09g011780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5070696-5075388 transcript_region:SL2.40ch09:5070696..5075388- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R080_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00029060g0020.1 protein AED:0.07 eAED:0.07 QI:0|0.83|0.85|1|1|0.85|7|146|495; (*GB) gi|225440568|ref|XP_002273523.1| (e_value=1e-160) PREDICTED: uncharacterized protein LOC100242619 [Vitis vinifera];; (*TAIR) AT2G37960.2 (e_value=5e-108) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:15886962-15889180 REVERSE LENGTH=480;; (*ITAG) Solyc09g011820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5092997-5097032 transcript_region:SL2.40ch09:5092997..5097032- functional_description:"Unknown Protein (AHRD V1)"; NbS00029060g0021.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|0.5|2|0|150; (*GB) gi|10798750|dbj|BAB16427.1| (e_value=1e-82) NtEIG-E80 [Nicotiana tabacum];; (*TAIR) AT3G54040.1 (e_value=2e-57) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g086710.1.1 (e_value=2e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64793100-64793774 transcript_region:SL2.40ch10:64793100..64793774- functional_description:"PAR-1b protein (AHRD V1 ***- Q43588_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00029060g0018.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|232; (*GB) gi|225440556|ref|XP_002273450.1| (e_value=1e-85) PREDICTED: uncharacterized protein LOC100252869 [Vitis vinifera];; (*TAIR) AT5G05830.1 (e_value=4e-61) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc09g011770.2.1 (e_value=2e-119) genomic_reference:SL2.40ch09 gene_region:5061936-5065593 transcript_region:SL2.40ch09:5061936..5065593- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *-*- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00029060g0024.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|4|0|407; (*GB) gi|4585576|gb|AAD25541.1|AF134051_1 (e_value=0.0) fructose-1,6-bisphosphatase precursor [Solanum tuberosum];; (*SWP) sp|P46275|F16P1_PEA (e_value=0.0) Fructose-1,6-bisphosphatase, chloroplastic OS=Pisum sativum GN=FBP PE=1 SV=2;; (*TAIR) AT3G54050.2 (e_value=0.0) | Symbols: HCEF1 | high cyclic electron flow 1 | chr3:20016951-20018527 FORWARD LENGTH=417;; (*ITAG) Solyc09g011810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5090038-5092652 transcript_region:SL2.40ch09:5090038..5092652+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** D0MHZ8_RHOM4); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0042132 NbS00010853g0007.1 protein AED:0.05 eAED:0.00 QI:144|1|0.87|1|0.42|0.5|8|448|213; (*ITAG) Solyc03g006380.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:976227-983439 transcript_region:SL2.40ch03:976227..983439- functional_description:"Unknown Protein (AHRD V1)"; NbS00024553g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.2|1|1|5|0|413; (*GB) gi|297738233|emb|CBI27434.3| (e_value=5e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-26) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=8e-28) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g015000.1.1 (e_value=1e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:9285667-9287496 transcript_region:SL2.40ch05:9285667..9287496+ functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 ***- FBL47_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024553g0016.1 protein AED:0.26 eAED:0.41 QI:0|0|0|0.8|0|0.2|5|0|338; (*ITAG) Solyc04g051160.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00024553g0014.1 protein AED:0.32 eAED:0.38 QI:0|0|0|1|0|0|2|0|139; (*GB) gi|224066721|ref|XP_002302185.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPU9|VITH1_ARATH (e_value=6e-43) Vacuolar iron transporter homolog 1 OS=Arabidopsis thaliana GN=At1g21140 PE=2 SV=1;; (*TAIR) AT1G21140.1 (e_value=5e-44) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr1:7404464-7405066 FORWARD LENGTH=200;; (*ITAG) Solyc04g051180.1.1 (e_value=1e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:49090686-49091183 transcript_region:SL2.40ch04:49090686..49091183- functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00024553g0017.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|106; (*ITAG) Solyc04g082230.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63565744-63566109 transcript_region:SL2.40ch04:63565744..63566109+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S348_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00053955g0001.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|415; (*GB) gi|15230170|ref|NP_189118.1| (e_value=1e-80) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G24740.2 (e_value=2e-83) | Symbols: | Protein of unknown function (DUF1644) | chr3:9032397-9033461 FORWARD LENGTH=354;; (*ITAG) Solyc09g061750.1.1 (e_value=2e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:55888369-55889505 transcript_region:SL2.40ch09:55888369..55889505+ functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00005037g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.44|1|0.25|0.33|9|64|399; (*GB) gi|257831431|gb|ACV71016.1| (e_value=3e-141) UPA16 [Capsicum annuum];; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=1e-82) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=8e-84) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097580.2.1 (e_value=2e-147) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00015798g0002.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|518|338; (*GB) gi|225436055|ref|XP_002276040.1| (e_value=2e-49) PREDICTED: uncharacterized protein LOC100263294 [Vitis vinifera];; (*SWP) sp|Q9BX46|RBM24_HUMAN (e_value=1e-13) RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1;; (*TAIR) AT3G56860.5 (e_value=4e-44) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc10g081330.1.1 (e_value=2e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61752173-61754621 transcript_region:SL2.40ch10:61752173..61754621- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00015798g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|160; (*GB) gi|356556072|ref|XP_003546351.1| (e_value=9e-72) PREDICTED: major allergen Pru ar 1-like [Glycine max];; (*SWP) sp|O50001|PRU1_PRUAR (e_value=1e-56) Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1;; (*ITAG) Solyc03g117460.1.1 (e_value=8e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60667287-60667842 transcript_region:SL2.40ch03:60667287..60667842+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q43550_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00016701g0012.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|1|1|5|464|340; (*GB) gi|225459544|ref|XP_002285850.1| (e_value=0.0) PREDICTED: UDP-galactose transporter 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C521|UGAL1_ARATH (e_value=0.0) UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1;; (*TAIR) AT1G77610.1 (e_value=0.0) | Symbols: | EamA-like transporter family protein | chr1:29165489-29167486 FORWARD LENGTH=336;; (*ITAG) Solyc06g060370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34748707-34755278 transcript_region:SL2.40ch06:34748707..34755278- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B4G1R1_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00016701g0011.1 protein AED:0.10 eAED:0.15 QI:0|0.72|0.60|0.95|0.63|0.60|23|240|1929; (*GB) gi|147794989|emb|CAN67425.1| (e_value=7e-171) hypothetical protein VITISV_006652 [Vitis vinifera];; (*SWP) sp|P93820|Y1439_ARATH (e_value=7e-105) BTB/POZ domain-containing protein At1g04390 OS=Arabidopsis thaliana GN=At1g04390 PE=2 SV=3;; (*TAIR) AT1G77620.1 (e_value=3e-93) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:29167934-29172867 REVERSE LENGTH=1151;; (*ITAG) Solyc06g060350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34715765-34732079 transcript_region:SL2.40ch06:34715765..34732079+ go_terms:GO:0005634,GO:0017111 functional_description:"Replication factor C subunit 1 (AHRD V1 *--- C5FPB4_NANOT); contains Interpro domain(s) IPR004582 Checkpoint protein Rad24 "; GO:0005634,GO:0017111 NbS00016701g0007.1 protein AED:0.38 eAED:0.44 QI:0|0|0|1|1|1|3|0|180; (*GB) gi|297852222|ref|XP_002893992.1| (e_value=7e-38) universal stress protein family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G44760.1 (e_value=2e-39) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:16896894-16898427 REVERSE LENGTH=213;; (*ITAG) Solyc06g060360.2.1 (e_value=3e-41) genomic_reference:SL2.40ch06 gene_region:34746490-34748240 transcript_region:SL2.40ch06:34746490..34748240+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- A8IXG1_BRACM); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00057559g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|255541222|ref|XP_002511675.1| (e_value=1e-44) Auxin-induced protein X10A, putative [Ricinus communis];; (*SWP) sp|P33079|A10A5_SOYBN (e_value=3e-16) Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=1e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079150.1.1 (e_value=5e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59962300-59962788 transcript_region:SL2.40ch08:59962300..59962788+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00057559g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.88|0.7|1|1|1|10|0|510; (*GB) gi|40809676|emb|CAB42651.2| (e_value=0.0) putative preprolegumain [Nicotiana tabacum];; (*SWP) sp|P49042|VPE_RICCO (e_value=0.0) Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT1G62710.1 (e_value=0.0) | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486;; (*ITAG) Solyc08g079160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59964244-59968153 transcript_region:SL2.40ch08:59964244..59968153- go_terms:GO:0004197 functional_description:"Vacuolar-processing enzyme (AHRD V1 **-- B9RBP3_RICCO); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00007760g0001.1 protein AED:0.00 eAED:0.00 QI:286|1|0.5|1|0|0|2|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00007760g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|224119730|ref|XP_002318148.1| (e_value=2e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=2e-126) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072830.1.1 (e_value=5e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53108033-53108953 transcript_region:SL2.40ch11:53108033..53108953+ go_terms:GO:0005975 functional_description:"Chitinase 2 (AHRD V1 ***- B6U7J7_MAIZE); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00018968g0003.1 protein AED:0.28 eAED:0.30 QI:230|0.45|0.41|1|0.36|0.41|12|81|427; (*GB) gi|225429021|ref|XP_002265128.1| (e_value=1e-104) PREDICTED: nucleobase-ascorbate transporter 4 [Vitis vinifera];; (*SWP) sp|P93039|NAT4_ARATH (e_value=2e-93) Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2;; (*TAIR) AT1G49960.1 (e_value=2e-94) | Symbols: | Xanthine/uracil permease family protein | chr1:18498700-18501699 FORWARD LENGTH=526;; (*ITAG) Solyc01g106920.2.1 (e_value=1e-165) genomic_reference:SL2.40ch01 gene_region:86388409-86392269 transcript_region:SL2.40ch01:86388409..86392269- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00022083g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|356530919|ref|XP_003534026.1| (e_value=3e-105) PREDICTED: carboxylesterase 1-like isoform 1 [Glycine max];; (*SWP) sp|Q0ZPV7|CXE1_ACTER (e_value=9e-100) Carboxylesterase 1 OS=Actinidia eriantha GN=CXE1 PE=1 SV=1;; (*TAIR) AT5G62180.1 (e_value=5e-97) | Symbols: AtCXE20, CXE20 | carboxyesterase 20 | chr5:24978866-24979849 REVERSE LENGTH=327;; (*ITAG) Solyc01g098140.2.1 (e_value=2e-173) genomic_reference:SL2.40ch01 gene_region:80484699-80487950 transcript_region:SL2.40ch01:80484699..80487950+ go_terms:GO:0008152 functional_description:"Neutral cholesterol ester hydrolase 1 (AHRD V1 *--- NCEH1_BOVIN); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00022083g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.9|1|1|1|10|125|505; (*GB) gi|255542416|ref|XP_002512271.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=0.0) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1;; (*TAIR) AT1G54570.1 (e_value=0.0) | Symbols: | Esterase/lipase/thioesterase family protein | chr1:20380649-20384953 REVERSE LENGTH=704;; (*ITAG) Solyc01g098110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80465152-80480438 transcript_region:SL2.40ch01:80465152..80480438+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0003824 NbS00046823g0008.1 protein AED:0.02 eAED:0.02 QI:73|1|1|1|1|1|4|101|571; (*GB) gi|255540321|ref|XP_002511225.1| (e_value=0.0) malate synthase, putative [Ricinus communis];; (*SWP) sp|P17815|MASY_RICCO (e_value=0.0) Malate synthase, glyoxysomal OS=Ricinus communis PE=2 SV=1;; (*TAIR) AT5G03860.2 (e_value=0.0) | Symbols: MLS | malate synthase | chr5:1032276-1034527 REVERSE LENGTH=562;; (*ITAG) Solyc03g111140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55852610-55855123 transcript_region:SL2.40ch03:55852610..55855123- go_terms:GO:0004474,GO:0042802 functional_description:"Malate synthase (AHRD V1 **** B9RAK0_RICCO); contains Interpro domain(s) IPR006252 Malate synthase A "; GO:0004474,GO:0042802 NbS00046823g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|357504275|ref|XP_003622426.1| (e_value=4e-29) U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula];; (*SWP) sp|Q8WWY3|PRP31_HUMAN (e_value=8e-18) U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2;; (*TAIR) AT1G60170.1 (e_value=1e-26) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485;; (*ITAG) Solyc08g078430.2.1 (e_value=9e-32) genomic_reference:SL2.40ch08 gene_region:59406043-59410273 transcript_region:SL2.40ch08:59406043..59410273- go_terms:GO:0005515,GO:0043021 functional_description:"Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal "; GO:0005515,GO:0043021 NbS00046823g0012.1 protein AED:0.15 eAED:0.15 QI:226|1|0.8|1|0.75|0.6|5|320|439; (*GB) gi|224121922|ref|XP_002318706.1| (e_value=6e-165) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67570.1 (e_value=9e-138) | Symbols: | Protein of unknown function (DUF3537) | chr1:25325318-25326938 FORWARD LENGTH=456;; (*ITAG) Solyc03g111150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55855757-55859349 transcript_region:SL2.40ch03:55855757..55859349- functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00046823g0010.1 protein AED:0.15 eAED:0.15 QI:254|1|1|1|1|1|6|218|549; (*GB) gi|255540313|ref|XP_002511221.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|Q84P23|4CLL9_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2;; (*TAIR) AT5G63380.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562;; (*ITAG) Solyc03g111170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55870931-55876919 transcript_region:SL2.40ch03:55870931..55876919- go_terms:GO:0016207 functional_description:"4-coumarate-coa ligase (AHRD V1 **** B9I3N1_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00033709g0001.1 protein AED:0.12 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|1293|362; (*GB) gi|297736301|emb|CBI24939.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SCP4|PP279_ARATH (e_value=8e-160) Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1;; (*TAIR) AT3G53170.1 (e_value=3e-160) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19704600-19706417 REVERSE LENGTH=499;; (*ITAG) Solyc08g045780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:36316245-36319524 transcript_region:SL2.40ch08:36316245..36319524+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUF3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00061634g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|225439823|ref|XP_002277319.1| (e_value=8e-43) PREDICTED: uncharacterized protein LOC100243200 [Vitis vinifera];; (*TAIR) AT5G02640.1 (e_value=8e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:594334-594819 REVERSE LENGTH=161;; (*ITAG) Solyc11g072890.1.1 (e_value=2e-50) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:53146367-53146828 transcript_region:SL2.40ch11:53146367..53146828+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021945g0011.1 protein AED:0.12 eAED:0.12 QI:354|1|1|1|1|1|3|405|340; (*GB) gi|255577560|ref|XP_002529658.1| (e_value=1e-130) Zeamatin precursor, putative [Ricinus communis];; (*SWP) sp|P28493|PR5_ARATH (e_value=9e-86) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT4G38660.1 (e_value=5e-117) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067984 REVERSE LENGTH=345;; (*ITAG) Solyc02g083760.2.1 (e_value=4e-170) genomic_reference:SL2.40ch02 gene_region:41620182-41622029 transcript_region:SL2.40ch02:41620182..41622029- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00021945g0013.1 protein AED:0.17 eAED:0.19 QI:0|0.33|0.14|1|0.5|0.28|7|0|537; (*GB) gi|297735002|emb|CBI17364.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82485|OPT7_ARATH (e_value=4e-177) Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1;; (*TAIR) AT4G10770.1 (e_value=3e-178) | Symbols: ATOPT7, OPT7 | oligopeptide transporter 7 | chr4:6628646-6632517 REVERSE LENGTH=766;; (*ITAG) Solyc02g083740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41608636-41613932 transcript_region:SL2.40ch02:41608636..41613932+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00021945g0009.1 protein AED:0.30 eAED:0.30 QI:113|0.37|0.55|0.88|0.37|0.44|9|374|407; (*GB) gi|225431114|ref|XP_002265595.1| (e_value=2e-103) PREDICTED: calmodulin-lysine N-methyltransferase [Vitis vinifera];; (*TAIR) AT4G35987.1 (e_value=3e-98) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17035121-17036823 FORWARD LENGTH=304;; (*ITAG) Solyc03g033470.2.1 (e_value=9e-123) genomic_reference:SL2.40ch03 gene_region:9303405-9308800 transcript_region:SL2.40ch03:9303405..9308800+ functional_description:"AGAP009131-PA (Fragment) (AHRD V1 **-- A0NGA2_ANOGA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00041113g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.25|0|1|0.25|0.2|5|0|525; (*GB) gi|30387025|emb|CAD89799.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=0.0) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=0.0) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00003873g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|225440213|ref|XP_002283659.1| (e_value=2e-50) PREDICTED: uncharacterized protein LOC100255095 [Vitis vinifera];; (*TAIR) AT3G56880.1 (e_value=5e-27) | Symbols: | VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245;; (*ITAG) Solyc10g077130.1.1 (e_value=5e-65) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59327643-59328260 transcript_region:SL2.40ch10:59327643..59328260+ functional_description:"Atcambp25-binding protein OF (AHRD V1 ***- D7LGI4_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00056815g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|23507177|gb|AAN38002.1| (e_value=7e-63) LEA1-like protein [Capsicum annuum];; (*SWP) sp|P46519|LEA14_SOYBN (e_value=2e-48) Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G01470.1 (e_value=2e-35) | Symbols: LEA14, LSR3 | Late embryogenesis abundant protein | chr1:172295-172826 REVERSE LENGTH=151;; (*ITAG) Solyc01g095150.2.1 (e_value=2e-65) genomic_reference:SL2.40ch01 gene_region:78285184-78287680 transcript_region:SL2.40ch01:78285184..78287680+ go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (Fragment) (AHRD V1 **-- B7TGE2_PINSY); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00031151g0003.1 protein AED:0.45 eAED:0.50 QI:0|0|0.5|1|0|0.5|2|103|67 NbS00026374g0001.1 protein AED:0.19 eAED:0.19 QI:243|0.5|0.66|1|0|0.66|3|0|232; (*GB) gi|255566666|ref|XP_002524317.1| (e_value=2e-93) molybdopterin cofactor synthesis protein A, putative [Ricinus communis];; (*SWP) sp|Q39056|CNX3_ARATH (e_value=6e-84) Molybdopterin biosynthesis protein CNX3 OS=Arabidopsis thaliana GN=CNX3 PE=2 SV=1;; (*TAIR) AT1G01290.2 (e_value=4e-85) | Symbols: CNX3 | cofactor of nitrate reductase and xanthine dehydrogenase 3 | chr1:114299-115296 FORWARD LENGTH=270;; (*ITAG) Solyc05g050570.2.1 (e_value=8e-138) genomic_reference:SL2.40ch05 gene_region:59878017-59880463 transcript_region:SL2.40ch05:59878017..59880463+ go_terms:GO:0005515,GO:0003824 functional_description:"Molybdenum cofactor biosynthesis protein C (AHRD V1 ***- D0MEL5_RHOM4); contains Interpro domain(s) IPR002820 Molybdopterin cofactor biosynthesis MoaC region "; GO:0005515,GO:0003824 NbS00014595g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.25|1|0.5|4|0|198; (*GB) gi|57013881|ref|YP_173355.1| (e_value=8e-37) hypothetical protein NitaMp007 [Nicotiana tabacum]; NbS00014595g0001.1 protein AED:0.35 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|320 NbS00014595g0003.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.25|1|1|4|0|313; (*ITAG) Solyc11g039800.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003205g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|825; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=0.0) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=3e-124) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=2e-125) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g007630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00055687g0009.1 protein AED:0.17 eAED:0.20 QI:0|0.66|0.56|1|0.73|0.62|16|816|1147; (*GB) gi|359493715|ref|XP_002280938.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063770.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63352575-63356278 transcript_region:SL2.40ch07:63352575..63356278+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00013262g0006.1 protein AED:0.04 eAED:0.04 QI:397|0.88|0.9|1|0.77|0.8|10|135|830; (*GB) gi|296089234|emb|CBI39006.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-81) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G20430.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr4:11017656-11021105 REVERSE LENGTH=856;; (*ITAG) Solyc02g069630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34043531-34051034 transcript_region:SL2.40ch02:34043531..34051034+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00013262g0010.1 protein AED:0.48 eAED:0.48 QI:0|0.66|0.6|0.7|0.77|0.9|10|0|328; (*GB) gi|76160943|gb|ABA40435.1| (e_value=7e-135) unknown [Solanum tuberosum];; (*SWP) sp|Q9SPE5|SNAG_ARATH (e_value=3e-117) Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana GN=GSNAP PE=2 SV=1;; (*TAIR) AT4G20410.1 (e_value=2e-118) | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF attachment protein | chr4:11014099-11016454 REVERSE LENGTH=291;; (*ITAG) Solyc02g069640.2.1 (e_value=8e-150) genomic_reference:SL2.40ch02 gene_region:34051316-34059064 transcript_region:SL2.40ch02:34051316..34059064- go_terms:GO:0005483 functional_description:"Gamma-soluble NSF attachment protein (AHRD V1 **** C1BLH4_OSMMO); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00060795g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225458181|ref|XP_002281211.1| (e_value=4e-64) PREDICTED: protein TIC 20-I, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=5e-64) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04940.1 (e_value=4e-65) | Symbols: TIC20 | translocon at the inner envelope membrane of chloroplasts 20 | chr1:1399588-1400616 FORWARD LENGTH=274;; (*ITAG) Solyc04g076740.2.1 (e_value=2e-66) genomic_reference:SL2.40ch04 gene_region:59228814-59231535 transcript_region:SL2.40ch04:59228814..59231535+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00014582g0002.1 protein AED:0.09 eAED:0.09 QI:262|1|1|1|0.71|0.5|8|194|1186; (*GB) gi|356499107|ref|XP_003518385.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100806426 [Glycine max];; (*TAIR) AT3G48670.2 (e_value=1e-162) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647;; (*ITAG) Solyc05g054420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63496687-63505339 transcript_region:SL2.40ch05:63496687..63505339- functional_description:"X1 (Fragment) (AHRD V1 *-*- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00014582g0011.1 protein AED:0.18 eAED:0.19 QI:264|0.88|0.8|1|0.88|0.8|10|0|679; (*GB) gi|23664357|gb|AAN39330.1| (e_value=0.0) telomere binding protein TBP1 [Nicotiana glutinosa];; (*SWP) sp|Q9FFY9|TRP4_ARATH (e_value=3e-132) Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1;; (*TAIR) AT5G13820.1 (e_value=2e-133) | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | telomeric DNA binding protein 1 | chr5:4461694-4464355 FORWARD LENGTH=640;; (*ITAG) Solyc05g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63483986-63489227 transcript_region:SL2.40ch05:63483986..63489227- go_terms:GO:0003691 functional_description:"Telomere binding protein (AHRD V1 **** A0JBS3_SOLLC); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003691 NbS00023826g0008.1 protein AED:0.01 eAED:0.01 QI:134|1|1|1|0.66|0.5|4|368|146; (*GB) gi|359475326|ref|XP_003631656.1| (e_value=3e-90) PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera];; (*SWP) sp|B5FGF8|RL27_VIBFM (e_value=1e-31) 50S ribosomal protein L27 OS=Vibrio fischeri (strain MJ11) GN=rpmA PE=3 SV=1;; (*TAIR) AT5G15220.1 (e_value=3e-67) | Symbols: | Ribosomal protein L27 family protein | chr5:4941466-4942133 REVERSE LENGTH=154;; (*ITAG) Solyc11g071320.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51928767-51929633 transcript_region:SL2.40ch11:51928767..51929633+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- B6T4C5_MAIZE); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005840 NbS00023826g0009.1 protein AED:0.08 eAED:0.11 QI:0|0.77|0.9|1|0.66|0.7|10|370|529; (*GB) gi|225430021|ref|XP_002284175.1| (e_value=4e-167) PREDICTED: uncharacterized protein LOC100267889 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=1e-145) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc08g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54597447-54603198 transcript_region:SL2.40ch08:54597447..54603198+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00039678g0004.1 protein AED:0.00 eAED:0.00 QI:140|1|1|1|1|1|2|397|152; (*GB) gi|224108133|ref|XP_002314732.1| (e_value=1e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VR4|ML423_ARATH (e_value=1e-62) MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1;; (*TAIR) AT1G24020.2 (e_value=8e-64) | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155;; (*ITAG) Solyc05g046150.2.1 (e_value=1e-23) genomic_reference:SL2.40ch05 gene_region:57493121-57494079 transcript_region:SL2.40ch05:57493121..57494079- go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00005742g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.25|1|1|4|0|457; (*GB) gi|197130963|gb|ACH47034.1| (e_value=0.0) lateral suppressor protein [Nicotiana tabacum];; (*SWP) sp|Q9ZWC5|SCL18_ARATH (e_value=1e-116) Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1;; (*TAIR) AT1G55580.1 (e_value=8e-118) | Symbols: LAS, SCL18 | GRAS family transcription factor | chr1:20764106-20765443 FORWARD LENGTH=445;; (*ITAG) Solyc07g066250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64958148-64959434 transcript_region:SL2.40ch07:64958148..64959434+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-* B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005742g0007.1 protein AED:0.34 eAED:1.00 QI:78|0|0|1|0|0|2|33|37 NbS00002372g0015.1 protein AED:0.22 eAED:0.23 QI:207|0.66|0.5|1|1|1|4|0|452; (*GB) gi|110083391|dbj|BAE97400.1| (e_value=8e-141) heat shock protein 90 [Nicotiana tabacum];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=1e-137) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=1e-137) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=3e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00002372g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|0|0.33|3|0|267; (*GB) gi|296089966|emb|CBI39785.3| (e_value=9e-94) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G55970.2 (e_value=2e-79) | Symbols: | RING/U-box superfamily protein | chr5:22668019-22669312 FORWARD LENGTH=343;; (*ITAG) Solyc07g065810.2.1 (e_value=2e-112) genomic_reference:SL2.40ch07 gene_region:64647606-64649101 transcript_region:SL2.40ch07:64647606..64649101+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00002372g0010.1 protein AED:0.31 eAED:0.31 QI:96|0.87|0.88|1|0.75|0.66|9|388|226; (*GB) gi|356582328|ref|NP_001239046.1| (e_value=4e-159) calcineurin B-like 2 [Solanum lycopersicum];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=3e-147) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT4G26570.1 (e_value=1e-143) | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226;; (*ITAG) Solyc07g065820.2.1 (e_value=8e-162) genomic_reference:SL2.40ch07 gene_region:64652286-64656394 transcript_region:SL2.40ch07:64652286..64656394+ go_terms:GO:0004723 functional_description:"Calcineurin B (AHRD V1 ***- Q8L7F6_PEA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0004723 NbS00002372g0009.1 protein AED:0.37 eAED:0.37 QI:203|0.25|0.2|0.4|0.75|0.6|5|0|65; (*TAIR) AT3G17300.1 (e_value=7e-16) | Symbols: | unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:5907616-5908695 FORWARD LENGTH=91;; (*ITAG) Solyc04g071180.2.1 (e_value=4e-19) genomic_reference:SL2.40ch04 gene_region:55715734-55717220 transcript_region:SL2.40ch04:55715734..55717220+ go_terms:GO:0000105 functional_description:"Genomic DNA chromosome 3 P1 clone MGD8 (AHRD V1 ***- Q9LUU1_ARATH); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0000105 NbS00027329g0001.1 protein AED:0.25 eAED:0.26 QI:0|0.33|0.5|1|1|1|4|557|646; (*GB) gi|359483659|ref|XP_002274224.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84VG6|PP160_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2;; (*TAIR) AT2G17525.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7624178-7626058 FORWARD LENGTH=626;; (*ITAG) Solyc09g061760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:55904414-55906300 transcript_region:SL2.40ch09:55904414..55906300+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038905g0004.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|292; (*GB) gi|365222926|gb|AEW69815.1| (e_value=7e-117) Hop-interacting protein THI116 [Solanum lycopersicum];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=4e-91) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=2e-91) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc03g117250.2.1 (e_value=2e-119) genomic_reference:SL2.40ch03 gene_region:60489302-60492373 transcript_region:SL2.40ch03:60489302..60492373- functional_description:"Flotillin 1 (AHRD V1 *-*- B3V5K3_9EURY); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00004751g0012.1 protein AED:0.27 eAED:0.27 QI:0|0.94|0.8|1|0.94|0.95|20|0|1037; (*GB) gi|255537870|ref|XP_002510000.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q92797|SYMPK_HUMAN (e_value=8e-46) Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2;; (*TAIR) AT1G27595.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961;; (*ITAG) Solyc04g076910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00004751g0015.1 protein AED:0.32 eAED:0.32 QI:302|1|0.8|1|0.5|0.4|5|0|239; (*GB) gi|302142115|emb|CBI19318.3| (e_value=1e-98) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27590.1 (e_value=1e-80) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9592293-9593912 FORWARD LENGTH=264;; (*ITAG) Solyc04g076900.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59423288-59429946 transcript_region:SL2.40ch04:59423288..59429946+ go_terms:GO:0005488 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00004751g0014.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|0.5|0.66|3|0|387; (*GB) gi|225458982|ref|XP_002283625.1| (e_value=0.0) PREDICTED: probable beta-1,4-xylosyltransferase IRX9H-like [Vitis vinifera];; (*SWP) sp|Q9SXC4|IRX9H_ARATH (e_value=8e-157) Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=1 SV=2;; (*TAIR) AT1G27600.2 (e_value=6e-158) | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:9604083-9605881 REVERSE LENGTH=394;; (*ITAG) Solyc04g076920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59455110-59461803 transcript_region:SL2.40ch04:59455110..59461803- go_terms:GO:0015018 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-* B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0015018 NbS00013962g0001.1 protein AED:0.19 eAED:0.20 QI:321|1|0.5|1|0|0|2|0|318; (*GB) gi|255582026|ref|XP_002531810.1| (e_value=7e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G08600.1 (e_value=8e-75) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc10g074820.1.1 (e_value=5e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57851557-57852507 transcript_region:SL2.40ch10:57851557..57852507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00020850g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=0.0) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-164) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=2e-57) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc07g006800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1645913-1647274 transcript_region:SL2.40ch07:1645913..1647274- go_terms:GO:0015020,GO:0080044 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 **** D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020,GO:0080044 NbS00020850g0007.1 protein AED:0.47 eAED:0.69 QI:0|0|0|0.4|1|1|5|0|137; (*GB) gi|192910686|gb|ACF06451.1| (e_value=8e-19) QM-like protein [Elaeis guineensis]; NbS00020850g0015.1 protein AED:0.08 eAED:0.08 QI:89|0.85|0.86|1|0.71|0.8|15|132|859; (*GB) gi|225446128|ref|XP_002270551.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera];; (*SWP) sp|B0F481|BIODA_ARATH (e_value=0.0) Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1;; (*TAIR) AT5G57590.1 (e_value=0.0) | Symbols: BIO1 | adenosylmethionine-8-amino-7-oxononanoate transaminases | chr5:23318593-23322687 REVERSE LENGTH=833;; (*ITAG) Solyc07g006810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1648413-1658924 transcript_region:SL2.40ch07:1648413..1658924+ go_terms:GO:0004015 functional_description:"Adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein (AHRD V1 **** Q9FKL5_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0004015 NbS00020850g0016.1 protein AED:0.16 eAED:0.16 QI:41|0.91|1|1|1|1|13|0|387; (*GB) gi|297738635|emb|CBI27880.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWN9|OPD22_ARATH (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2;; (*TAIR) AT3G13930.1 (e_value=0.0) | Symbols: | Dihydrolipoamide acetyltransferase, long form protein | chr3:4596240-4600143 FORWARD LENGTH=539;; (*ITAG) Solyc07g006790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1637797-1645252 transcript_region:SL2.40ch07:1637797..1645252+ go_terms:GO:0004742,GO:0005507 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0004742,GO:0005507 NbS00020850g0011.1 protein AED:0.17 eAED:0.17 QI:152|0.33|0.5|0.75|0|0.25|4|0|62 NbS00020850g0017.1 protein AED:0.19 eAED:0.27 QI:196|0.4|0.66|1|0|0.33|6|0|130; (*ITAG) Solyc07g006790.2.1 (e_value=6e-17) genomic_reference:SL2.40ch07 gene_region:1637797-1645252 transcript_region:SL2.40ch07:1637797..1645252+ go_terms:GO:0004742,GO:0005507 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0004742,GO:0005507 NbS00042960g0008.1 protein AED:0.12 eAED:0.12 QI:63|0.82|0.83|1|0.88|0.88|18|553|676; (*GB) gi|225439207|ref|XP_002270169.1| (e_value=0.0) PREDICTED: polyribonucleotide nucleotidyltransferase [Vitis vinifera];; (*SWP) sp|Q6MDI2|PNP_PARUW (e_value=2e-154) Polyribonucleotide nucleotidyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=pnp PE=3 SV=2;; (*TAIR) AT3G03710.1 (e_value=0.0) | Symbols: RIF10, PNP | polyribonucleotide nucleotidyltransferase, putative | chr3:919542-924906 FORWARD LENGTH=922;; (*ITAG) Solyc02g086600.2.1 (e_value=5e-88) genomic_reference:SL2.40ch02 gene_region:43834786-43843201 transcript_region:SL2.40ch02:43834786..43843201- go_terms:GO:0003729 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- Q1PVN2_9BACT); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0003729 NbS00017404g0001.1 protein AED:0.31 eAED:0.31 QI:229|1|1|1|1|1|3|216|138; (*GB) gi|24370975|emb|CAA70968.2| (e_value=2e-82) amino acid transporter [Solanum tuberosum];; (*SWP) sp|P92934|AAP6_ARATH (e_value=2e-68) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=2e-69) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc04g077050.2.1 (e_value=1e-84) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00014170g0009.1 protein AED:0.03 eAED:0.08 QI:71|0.75|0.66|1|0.87|0.77|9|0|485; (*GB) gi|147789625|emb|CAN65160.1| (e_value=0.0) hypothetical protein VITISV_021747 [Vitis vinifera];; (*SWP) sp|Q8I8U7|TRA1_DROME (e_value=8e-31) Transcription-associated protein 1 OS=Drosophila melanogaster GN=Nipped-A PE=1 SV=3;; (*TAIR) AT4G36080.1 (e_value=2e-149) | Symbols: | phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases | chr4:17059996-17077628 REVERSE LENGTH=3834;; (*ITAG) Solyc02g083900.2.1 (e_value=7e-176) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00014170g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|229; (*GB) gi|359476827|ref|XP_003631895.1| (e_value=9e-98) PREDICTED: transformation/transcription domain-associated protein [Vitis vinifera];; (*SWP) sp|Q54T85|TRA1_DICDI (e_value=4e-33) Probable transcription-associated protein 1 OS=Dictyostelium discoideum GN=tra1 PE=3 SV=2;; (*TAIR) AT4G36080.2 (e_value=2e-86) | Symbols: | phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases | chr4:17059996-17077628 REVERSE LENGTH=3804;; (*ITAG) Solyc02g083900.2.1 (e_value=7e-115) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00041898g0001.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|0|0|2|0|115 NbS00054976g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|220; (*GB) gi|225452853|ref|XP_002283723.1| (e_value=6e-26) PREDICTED: probable calcium-binding protein CML45 [Vitis vinifera];; (*SWP) sp|Q9MBG5|CML30_ARATH (e_value=6e-21) Probable calcium-binding protein CML30 OS=Arabidopsis thaliana GN=CML30 PE=2 SV=1;; (*TAIR) AT3G29000.1 (e_value=5e-22) | Symbols: | Calcium-binding EF-hand family protein | chr3:11005791-11006375 FORWARD LENGTH=194;; (*ITAG) Solyc03g115930.1.1 (e_value=1e-74) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59555528-59556136 transcript_region:SL2.40ch03:59555528..59556136- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011860g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.76|0.84|1|1|13|0|788; (*GB) gi|255561268|ref|XP_002521645.1| (e_value=0.0) arsenite-resistance protein, putative [Ricinus communis];; (*SWP) sp|Q9ZVD0|SRRT_ARATH (e_value=0.0) Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2;; (*TAIR) AT2G27100.1 (e_value=0.0) | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE) | chr2:11572587-11576357 FORWARD LENGTH=720;; (*ITAG) Solyc01g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3095457-3108637 transcript_region:SL2.40ch01:3095457..3108637- go_terms:GO:0005515,GO:0003700 functional_description:"Serrate RNA effector molecule homolog (AHRD V1 *-*- SRRT_DROWI)"; GO:0005515,GO:0003700 NbS00011860g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|225436011|ref|XP_002273485.1| (e_value=9e-71) PREDICTED: uncharacterized protein LOC100242686 [Vitis vinifera];; (*TAIR) AT2G27080.2 (e_value=2e-68) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260;; (*ITAG) Solyc01g009160.2.1 (e_value=4e-111) genomic_reference:SL2.40ch01 gene_region:3172415-3173564 transcript_region:SL2.40ch01:3172415..3173564- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00011860g0007.1 protein AED:0.26 eAED:0.26 QI:160|1|1|1|0.6|0.5|6|450|98; (*GB) gi|351723875|ref|NP_001237294.1| (e_value=2e-60) uncharacterized protein LOC100305829 [Glycine max];; (*SWP) sp|Q5RCP3|NAA38_PONAB (e_value=3e-39) N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo abelii GN=NAA38 PE=3 SV=3;; (*TAIR) AT1G65700.2 (e_value=5e-58) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:24434463-24435870 REVERSE LENGTH=98;; (*ITAG) Solyc06g073700.2.1 (e_value=4e-64) genomic_reference:SL2.40ch06 gene_region:41857907-41860856 transcript_region:SL2.40ch06:41857907..41860856- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein LSM8 (AHRD V1 **-- C5FH47_NANOT); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00040642g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|357470647|ref|XP_003605608.1| (e_value=4e-77) DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula];; (*SWP) sp|Q3C1H4|ATPA_NICSY (e_value=4e-59) ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=1e-56) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00023850g0004.1 protein AED:0.13 eAED:0.14 QI:347|0.91|0.76|1|0.83|0.69|13|0|905; (*GB) gi|225432438|ref|XP_002277102.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263026 [Vitis vinifera];; (*TAIR) AT5G18860.1 (e_value=0.0) | Symbols: | inosine-uridine preferring nucleoside hydrolase family protein | chr5:6291023-6295581 FORWARD LENGTH=890;; (*ITAG) Solyc01g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72318147-72325085 transcript_region:SL2.40ch01:72318147..72325085- go_terms:GO:0016787 functional_description:"Inosine-uridine preferring nucleoside hydrolase family protein (AHRD V1 *-** D7LYI5_ARALY); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; GO:0016787 NbS00023850g0115.1 protein AED:0.09 eAED:0.09 QI:332|0.38|0.35|0.92|0.76|0.71|14|0|821 NbS00023850g0117.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|189 NbS00023850g0108.1 protein AED:0.45 eAED:0.45 QI:195|0.6|0.83|0.83|0.8|0.66|6|0|138 NbS00050680g0001.1 protein AED:0.27 eAED:0.27 QI:197|1|0.5|1|0|0|2|0|349; (*GB) gi|359477190|ref|XP_002268185.2| (e_value=1e-148) PREDICTED: chaperone protein dnaJ 49 [Vitis vinifera];; (*SWP) sp|Q9FH28|DNJ49_ARATH (e_value=3e-111) Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2;; (*TAIR) AT5G49060.1 (e_value=2e-112) | Symbols: | Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) | chr5:19886764-19888136 FORWARD LENGTH=354;; (*ITAG) Solyc12g099510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64971202-64984594 transcript_region:SL2.40ch12:64971202..64984594- go_terms:GO:0005488,GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- B6TUY9_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0005488,GO:0006457,GO:0031072 NbS00050680g0002.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|1|1|2|0|107; (*GB) gi|225431723|ref|XP_002268447.1| (e_value=7e-21) PREDICTED: uncharacterized protein LOC100253295 [Vitis vinifera];; (*TAIR) AT3G06890.1 (e_value=2e-16) | Symbols: | unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2176949-2177335 FORWARD LENGTH=128;; (*ITAG) Solyc12g099500.1.1 (e_value=2e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64967836-64968195 transcript_region:SL2.40ch12:64967836..64968195- functional_description:"Unknown Protein (AHRD V1)"; NbS00004053g0012.1 protein AED:0.00 eAED:0.00 QI:201|1|1|1|0.85|0.87|8|36|432; (*GB) gi|225431806|ref|XP_002272864.1| (e_value=0.0) PREDICTED: phospholipase D p1-like [Vitis vinifera];; (*SWP) sp|Q9LRZ5|PLDP1_ARATH (e_value=3e-170) Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1;; (*TAIR) AT3G16785.1 (e_value=3e-171) | Symbols: PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 | phospholipase D P1 | chr3:5711329-5718696 FORWARD LENGTH=1096;; (*ITAG) Solyc01g100020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00004053g0013.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|0.91|0.92|13|255|636; (*GB) gi|356574971|ref|XP_003555616.1| (e_value=0.0) PREDICTED: phospholipase D p1-like [Glycine max];; (*SWP) sp|Q9M9W8|PLDP2_ARATH (e_value=0.0) Phospholipase D p2 OS=Arabidopsis thaliana GN=PLDP2 PE=2 SV=2;; (*TAIR) AT3G05630.1 (e_value=0.0) | Symbols: PLDP2, PDLZ2, PLDZETA2 | phospholipase D P2 | chr3:1635321-1640105 FORWARD LENGTH=1046;; (*ITAG) Solyc01g100020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00004053g0011.1 protein AED:0.25 eAED:0.25 QI:295|0.5|0.33|0.66|1|1|3|0|94; (*GB) gi|350539233|ref|NP_001233870.1| (e_value=9e-47) deoxyuridine 5'-triphosphate nucleotidohydrolase [Solanum lycopersicum];; (*SWP) sp|P32518|DUT_SOLLC (e_value=3e-48) Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G46940.1 (e_value=4e-35) | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr3:17288367-17288867 REVERSE LENGTH=166;; (*ITAG) Solyc01g100030.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:81869800-81871185 transcript_region:SL2.40ch01:81869800..81871185+ go_terms:GO:0046080 functional_description:"Deoxyuridine 5&apos-triphosphate nucleotidohydrolase (AHRD V1 ***- D0NVQ2_PHYIN); contains Interpro domain(s) IPR008181 DeoxyUTP pyrophosphatase subfamily 1 "; GO:0046080 NbS00004053g0019.1 protein AED:0.36 eAED:0.38 QI:0|0.66|0.5|1|0.66|0.75|4|0|329; (*GB) gi|255542816|ref|XP_002512471.1| (e_value=1e-102) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q0WRB2|P2C73_ARATH (e_value=4e-96) Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1;; (*TAIR) AT5G27930.2 (e_value=3e-97) | Symbols: | Protein phosphatase 2C family protein | chr5:9958199-9960219 REVERSE LENGTH=373;; (*ITAG) Solyc01g100040.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:81872312-81875388 transcript_region:SL2.40ch01:81872312..81875388- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00000587g0004.1 protein AED:0.67 eAED:0.67 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|143; (*GB) gi|225440670|ref|XP_002279771.1| (e_value=4e-30) PREDICTED: protein yippee-like [Vitis vinifera];; (*SWP) sp|P59234|YIPL_SOLTU (e_value=9e-27) Protein yippee-like OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G40110.2 (e_value=5e-28) | Symbols: | Yippee family putative zinc-binding protein | chr2:16748159-16749226 FORWARD LENGTH=110;; (*ITAG) Solyc10g076750.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59022368-59026794 transcript_region:SL2.40ch10:59022368..59026794+ functional_description:"Yippee-like protein (AHRD V1 ***- A9QXI3_SOLTU); contains Interpro domain(s) IPR004910 Yippee-like protein "; NbS00024705g0006.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0|1|0|0|4|0|476; (*GB) gi|359481981|ref|XP_002277307.2| (e_value=2e-65) PREDICTED: trihelix transcription factor GT-2-like [Vitis vinifera];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=2e-22) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT5G03680.1 (e_value=1e-38) | Symbols: PTL | Duplicated homeodomain-like superfamily protein | chr5:957858-960760 FORWARD LENGTH=591;; (*ITAG) Solyc09g009250.2.1 (e_value=7e-67) genomic_reference:SL2.40ch09 gene_region:2634459-2637947 transcript_region:SL2.40ch09:2634459..2637947+ go_terms:GO:0003700 functional_description:"Trihelix transcription factor (AHRD V1 **-* Q6Q6T0_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00060123g0003.1 protein AED:0.45 eAED:0.45 QI:0|0.33|0.5|0.75|0.33|0.25|4|352|239; (*GB) gi|356514569|ref|XP_003525978.1| (e_value=3e-66) PREDICTED: uncharacterized protein LOC100790617 [Glycine max];; (*TAIR) AT1G55340.2 (e_value=3e-37) | Symbols: | Protein of unknown function (DUF1639) | chr1:20652605-20653469 FORWARD LENGTH=195;; (*ITAG) Solyc08g065840.2.1 (e_value=2e-56) genomic_reference:SL2.40ch08 gene_region:51392391-51393993 transcript_region:SL2.40ch08:51392391..51393993+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00013305g0001.1 protein AED:0.10 eAED:0.10 QI:304|1|1|1|0.8|0.66|6|151|200; (*GB) gi|225430615|ref|XP_002266663.1| (e_value=2e-113) PREDICTED: exosome complex component CSL4 [Vitis vinifera];; (*SWP) sp|Q9Y3B2|EXOS1_HUMAN (e_value=4e-43) Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1;; (*TAIR) AT5G38890.1 (e_value=2e-99) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:15569507-15570898 FORWARD LENGTH=191;; (*ITAG) Solyc04g050480.2.1 (e_value=1e-134) genomic_reference:SL2.40ch04 gene_region:46434035-46440645 transcript_region:SL2.40ch04:46434035..46440645- go_terms:GO:0005515 functional_description:"3-5 exoribonuclease CSL4 (AHRD V1 ***- B6T1M3_MAIZE); contains Interpro domain(s) IPR019495 Exosome complex, component CSL4 "; GO:0005515 NbS00013305g0109.1 protein AED:0.11 eAED:0.13 QI:0|0.84|0.82|1|0.93|0.91|34|552|1320 NbS00013305g0101.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.5|1|1|1|6|0|478 NbS00042608g0004.1 protein AED:0.35 eAED:0.36 QI:0|1|0.5|1|1|1|2|0|99; (*GB) gi|350539721|ref|NP_001234510.1| (e_value=2e-47) constitutive plastid-lipid associated protein [Solanum lycopersicum];; (*TAIR) AT3G20390.1 (e_value=7e-23) | Symbols: | endoribonuclease L-PSP family protein | chr3:7110227-7111695 REVERSE LENGTH=187;; (*ITAG) Solyc10g006290.2.1 (e_value=4e-50) genomic_reference:SL2.40ch10 gene_region:946916-950083 transcript_region:SL2.40ch10:946916..950083+ go_terms:GO:0005515,GO:0004521 functional_description:"Endoribonuclease L-PSP family protein (AHRD V1 **-* D7LAZ0_ARALY); contains Interpro domain(s) IPR019897 YjgF-like protein, conserved site "; GO:0005515,GO:0004521 NbS00042608g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|0|402; (*GB) gi|22331208|ref|NP_188686.2| (e_value=0.0) purple acid phosphatase 18 [Arabidopsis thaliana];; (*SWP) sp|Q9LJU7|PPA18_ARATH (e_value=0.0) Purple acid phosphatase 18 OS=Arabidopsis thaliana GN=PAP18 PE=2 SV=1;; (*TAIR) AT3G20500.1 (e_value=0.0) | Symbols: ATPAP18, PAP18 | purple acid phosphatase 18 | chr3:7157926-7160244 FORWARD LENGTH=437;; (*ITAG) Solyc10g006300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:950380-955091 transcript_region:SL2.40ch10:950380..955091+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00042608g0010.1 protein AED:0.07 eAED:0.19 QI:26|0.4|0.66|1|0.6|0.66|6|559|189; (*GB) gi|350539721|ref|NP_001234510.1| (e_value=9e-64) constitutive plastid-lipid associated protein [Solanum lycopersicum];; (*SWP) sp|P52758|UK114_HUMAN (e_value=4e-27) Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1;; (*TAIR) AT3G20390.1 (e_value=6e-52) | Symbols: | endoribonuclease L-PSP family protein | chr3:7110227-7111695 REVERSE LENGTH=187;; (*ITAG) Solyc10g006290.2.1 (e_value=2e-66) genomic_reference:SL2.40ch10 gene_region:946916-950083 transcript_region:SL2.40ch10:946916..950083+ go_terms:GO:0005515,GO:0004521 functional_description:"Endoribonuclease L-PSP family protein (AHRD V1 **-* D7LAZ0_ARALY); contains Interpro domain(s) IPR019897 YjgF-like protein, conserved site "; GO:0005515,GO:0004521 NbS00020982g0011.1 protein AED:0.19 eAED:0.19 QI:56|0.77|0.9|1|0.77|0.9|10|337|286; (*GB) gi|45433317|emb|CAD27462.1| (e_value=5e-146) nucleosome assembly protein 1-like protein 3 [Nicotiana tabacum];; (*SWP) sp|O59797|YCO6_SCHPO (e_value=1e-33) Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1;; (*TAIR) AT2G19480.3 (e_value=1e-115) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc12g008940.1.1 (e_value=3e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00020982g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|1|1|1|2|0|95; (*GB) gi|350535318|ref|NP_001234444.1| (e_value=3e-26) 30S ribosomal protein S16 [Solanum lycopersicum];; (*TAIR) AT5G56940.1 (e_value=7e-21) | Symbols: | Ribosomal protein S16 family protein | chr5:23030879-23032200 FORWARD LENGTH=135;; (*ITAG) Solyc07g008660.2.1 (e_value=6e-29) genomic_reference:SL2.40ch07 gene_region:3593472-3596877 transcript_region:SL2.40ch07:3593472..3596877- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S16 (AHRD V1 ***- B3IWG3_SOLLC); contains Interpro domain(s) IPR000307 Ribosomal protein S16 "; GO:0003735,GO:0005515 NbS00016325g0006.1 protein AED:0.10 eAED:0.11 QI:11|1|0.33|1|0.5|1|3|0|357; (*GB) gi|357484645|ref|XP_003612610.1| (e_value=4e-129) hypothetical protein MTR_5g026910 [Medicago truncatula];; (*TAIR) AT5G45410.3 (e_value=1e-115) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18402071-18403282 REVERSE LENGTH=342;; (*ITAG) Solyc08g075860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00016325g0004.1 protein AED:0.16 eAED:0.16 QI:57|0.66|0.5|1|0.33|0.25|4|142|59; (*GB) gi|194462395|gb|ACF72672.1| (e_value=1e-24) ribosomal protein L24 [Cucumis melo var. cantalupensis];; (*TAIR) AT5G23535.1 (e_value=2e-23) | Symbols: | KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159;; (*ITAG) Solyc08g075850.2.1 (e_value=2e-30) genomic_reference:SL2.40ch08 gene_region:57094012-57098518 transcript_region:SL2.40ch08:57094012..57098518- go_terms:GO:0005515 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- Q9LT09_ARATH); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005515 NbS00018802g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|1022; (*GB) gi|34761800|gb|AAQ82053.1| (e_value=0.0) verticillium wilt disease resistance protein precursor [Solanum torvum];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-80) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05660.1 (e_value=6e-103) | Symbols: AtRLP33, RLP33 | receptor like protein 33 | chr3:1649258-1652001 REVERSE LENGTH=875;; (*ITAG) Solyc09g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:48645-52064 transcript_region:SL2.40ch09:48645..52064- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001732g0007.1 protein AED:0.01 eAED:0.01 QI:216|1|1|1|1|1|2|144|145; (*GB) gi|359480520|ref|XP_003632481.1| (e_value=4e-39) PREDICTED: uncharacterized protein At5g65660-like [Vitis vinifera];; (*SWP) sp|Q9LSK9|Y5566_ARATH (e_value=2e-38) Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1;; (*TAIR) AT5G65660.1 (e_value=2e-39) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:26245444-26246245 REVERSE LENGTH=136;; (*ITAG) Solyc02g063420.2.1 (e_value=1e-63) genomic_reference:SL2.40ch02 gene_region:30083702-30084745 transcript_region:SL2.40ch02:30083702..30084745+ functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 **-- A9YWR1_MEDTR)"; NbS00001732g0009.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0|2|44|103; (*ITAG) Solyc02g063420.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:30083702-30084745 transcript_region:SL2.40ch02:30083702..30084745+ functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 **-- A9YWR1_MEDTR)"; NbS00006042g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|225455904|ref|XP_002275968.1| (e_value=0.0) PREDICTED: DNA/RNA-binding protein KIN17 [Vitis vinifera];; (*SWP) sp|Q8K339|KIN17_MOUSE (e_value=1e-112) DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1;; (*TAIR) AT1G55460.1 (e_value=0.0) | Symbols: | DNA/RNA-binding protein Kin17, conserved region | chr1:20707567-20708802 FORWARD LENGTH=411;; (*ITAG) Solyc05g054500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63560285-63561484 transcript_region:SL2.40ch05:63560285..63561484- go_terms:GO:0003723,GO:0003690 functional_description:"DNA/RNA-binding protein KIN17 (AHRD V1 **-* KIN17_MOUSE); contains Interpro domain(s) IPR019447 DNA/RNA-binding protein Kin17, conserved region "; GO:0003723,GO:0003690 NbS00006042g0002.1 protein AED:0.46 eAED:0.54 QI:0|0|0|1|1|1|2|0|185; (*GB) gi|62866633|gb|AAY17262.1| (e_value=7e-115) TSC13 protein [Nicotiana benthamiana];; (*SWP) sp|Q55C17|TECR_DICDI (e_value=8e-48) Trans-2,3-enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1;; (*TAIR) AT3G55360.1 (e_value=3e-107) | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr3:20521186-20522856 REVERSE LENGTH=310;; (*ITAG) Solyc05g054490.2.1 (e_value=1e-113) genomic_reference:SL2.40ch05 gene_region:63554153-63559157 transcript_region:SL2.40ch05:63554153..63559157- go_terms:GO:0016631 functional_description:"Trans-2-enoyl-CoA reductase (AHRD V1 **-* A9XUG8_GOSHI); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016631 NbS00013580g0011.1 protein AED:0.07 eAED:0.07 QI:129|0.66|0.25|1|0.66|0.5|4|0|698; (*GB) gi|225455732|ref|XP_002273302.1| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100266325 [Vitis vinifera];; (*TAIR) AT3G05670.1 (e_value=4e-34) | Symbols: | RING/U-box protein | chr3:1653888-1657022 FORWARD LENGTH=883;; (*ITAG) Solyc06g069360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39497126-39503758 transcript_region:SL2.40ch06:39497126..39503758+ go_terms:GO:0008270 functional_description:"PHD-finger family protein (AHRD V1 *-*- B6U0S2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00013580g0001.1 protein AED:0.23 eAED:0.23 QI:270|1|1|1|0.66|0.5|4|134|92; (*GB) gi|255547063|ref|XP_002514589.1| (e_value=4e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g114670.2.1 (e_value=4e-35) genomic_reference:SL2.40ch03 gene_region:58632193-58636537 transcript_region:SL2.40ch03:58632193..58636537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005607g0010.1 protein AED:0.17 eAED:0.17 QI:77|0.78|0.8|1|0.71|0.73|15|0|1019; (*GB) gi|224077052|ref|XP_002305110.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5D1D6|GBP1_CHLAE (e_value=1e-38) Interferon-induced guanylate-binding protein 1 OS=Chlorocebus aethiops GN=GBP1 PE=2 SV=1;; (*TAIR) AT5G46070.1 (e_value=0.0) | Symbols: | Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082;; (*ITAG) Solyc02g077600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37063720-37072429 transcript_region:SL2.40ch02:37063720..37072429+ go_terms:GO:0005525 functional_description:"Guanylate-binding protein 10 (AHRD V1 *-*- Q000W5_MOUSE); contains Interpro domain(s) IPR015894 Guanylate-binding protein, N-terminal "; GO:0005525 NbS00005607g0013.1 protein AED:0.07 eAED:0.15 QI:0|1|0.33|1|1|1|3|202|304; (*GB) gi|147833459|emb|CAN77470.1| (e_value=2e-154) hypothetical protein VITISV_029763 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=5e-68) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G28500.1 (e_value=7e-122) | Symbols: ANAC073, SND2, NAC073 | NAC domain containing protein 73 | chr4:14083014-14084266 FORWARD LENGTH=305;; (*ITAG) Solyc02g077610.2.1 (e_value=3e-172) genomic_reference:SL2.40ch02 gene_region:37073622-37077632 transcript_region:SL2.40ch02:37073622..37077632- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H2Q1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00005607g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|3|0|80; (*GB) gi|255645541|gb|ACU23265.1| (e_value=1e-30) unknown [Glycine max];; (*TAIR) AT1G79390.1 (e_value=2e-28) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29863465-29864276 REVERSE LENGTH=126;; (*ITAG) Solyc09g098140.2.1 (e_value=4e-35) genomic_reference:SL2.40ch09 gene_region:67306143-67309514 transcript_region:SL2.40ch09:67306143..67309514+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010926g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|225440572|ref|XP_002276782.1| (e_value=8e-111) PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Vitis vinifera];; (*SWP) sp|Q9LYX1|LRK82_ARATH (e_value=4e-21) L-type lectin-domain containing receptor kinase VIII.2 OS=Arabidopsis thaliana GN=LECRK82 PE=2 SV=1;; (*TAIR) AT5G01090.1 (e_value=1e-59) | Symbols: | Concanavalin A-like lectin family protein | chr5:33055-34116 FORWARD LENGTH=353;; (*ITAG) Solyc09g011840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5120602-5121681 transcript_region:SL2.40ch09:5120602..5121681+ go_terms:GO:0005488 functional_description:"Receptor lectin kinase-like protein (AHRD V1 *-*- Q570D3_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005488 NbS00018646g0006.1 protein AED:0.09 eAED:0.09 QI:239|1|1|1|1|1|10|256|408; (*GB) gi|225428701|ref|XP_002281817.1| (e_value=2e-138) PREDICTED: uncharacterized protein LOC100241743 [Vitis vinifera];; (*SWP) sp|Q05CL8|LARP7_MOUSE (e_value=9e-12) La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2;; (*TAIR) AT3G19090.1 (e_value=1e-97) | Symbols: | RNA-binding protein | chr3:6601466-6603709 FORWARD LENGTH=455;; (*ITAG) Solyc01g108310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87429824-87432064 transcript_region:SL2.40ch01:87429824..87432064+ go_terms:GO:0003676,GO:0000166 functional_description:"Os11g0248200 protein (Fragment) (AHRD V1 *--- Q0ITJ6_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0000166 NbS00018646g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|0.66|0.75|4|0|297; (*GB) gi|255561669|ref|XP_002521844.1| (e_value=4e-135) Peroxidase 10 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FX85|PER10_ARATH (e_value=6e-118) Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1;; (*TAIR) AT1G49570.1 (e_value=4e-119) | Symbols: | Peroxidase superfamily protein | chr1:18347077-18348712 FORWARD LENGTH=350;; (*ITAG) Solyc01g108320.2.1 (e_value=8e-177) genomic_reference:SL2.40ch01 gene_region:87434515-87436047 transcript_region:SL2.40ch01:87434515..87436047+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00018646g0010.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0|2|0|142; (*ITAG) Solyc01g108330.2.1 (e_value=3e-26) genomic_reference:SL2.40ch01 gene_region:87440624-87441428 transcript_region:SL2.40ch01:87440624..87441428+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024573g0008.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|1|1|3|0|532; (*GB) gi|224125344|ref|XP_002329782.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=4e-127) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G28350.1 (e_value=2e-170) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:14026577-14028622 FORWARD LENGTH=649;; (*ITAG) Solyc02g078170.1.1 (e_value=3e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00024573g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|126143480|dbj|BAF47279.1| (e_value=7e-39) lectin-receptor like protein kinase 3 [Nicotiana tabacum];; (*ITAG) Solyc02g078170.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00024573g0009.1 protein AED:0.12 eAED:0.12 QI:43|0.5|0.66|1|1|1|3|0|301; (*GB) gi|255536801|ref|XP_002509467.1| (e_value=2e-95) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G32480.1 (e_value=1e-67) | Symbols: | Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287;; (*ITAG) Solyc02g078160.2.1 (e_value=3e-136) genomic_reference:SL2.40ch02 gene_region:37512382-37514246 transcript_region:SL2.40ch02:37512382..37514246+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00012323g0006.1 protein AED:0.39 eAED:0.39 QI:163|0.66|0.5|0.75|0|0|4|0|80 NbS00012323g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|67 NbS00012323g0007.1 protein AED:0.40 eAED:0.51 QI:0|0|0.66|1|0|0|3|218|69 NbC25809920g0004.1 protein AED:0.15 eAED:0.18 QI:6|0|0|1|0.5|0.2|5|0|377; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-61) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00028484g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.71|0.62|0.87|1|1|8|381|443; (*GB) gi|255538746|ref|XP_002510438.1| (e_value=6e-110) NAD dependent epimerase/dehydratase, putative [Ricinus communis];; (*SWP) sp|P0AD12|YEEZ_ECOLI (e_value=9e-11) Protein yeeZ OS=Escherichia coli (strain K12) GN=yeeZ PE=1 SV=1;; (*TAIR) AT1G19690.1 (e_value=4e-92) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:6807925-6809562 REVERSE LENGTH=352;; (*ITAG) Solyc02g089890.2.1 (e_value=6e-164) genomic_reference:SL2.40ch02 gene_region:46152628-46161078 transcript_region:SL2.40ch02:46152628..46161078- go_terms:GO:0006508,GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *-*- D3NY83_AZOS1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0006508,GO:0044237,GO:0008152 NbS00033759g0007.1 protein AED:0.56 eAED:0.64 QI:0|0.2|0|0.66|0|0.16|6|0|241; (*GB) gi|224143338|ref|XP_002324921.1| (e_value=4e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79710.1 (e_value=1e-16) | Symbols: | Major facilitator superfamily protein | chr1:29995137-29996988 FORWARD LENGTH=497;; (*ITAG) Solyc08g006680.2.1 (e_value=7e-28) genomic_reference:SL2.40ch08 gene_region:1252318-1257044 transcript_region:SL2.40ch08:1252318..1257044+ go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B4B3T5_9CHRO); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00033759g0008.1 protein AED:0.38 eAED:0.49 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|225456359|ref|XP_002283991.1| (e_value=1e-20) PREDICTED: uncharacterized protein LOC100264705 [Vitis vinifera];; (*TAIR) AT5G63480.1 (e_value=5e-16) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417317-25418473 FORWARD LENGTH=189;; (*ITAG) Solyc08g006670.2.1 (e_value=5e-38) genomic_reference:SL2.40ch08 gene_region:1247049-1249937 transcript_region:SL2.40ch08:1247049..1249937- functional_description:"Unknown Protein (AHRD V1)"; NbC25445121g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|352; (*GB) gi|298204798|emb|CBI25296.3| (e_value=3e-176) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SBA7|STP8_ARATH (e_value=9e-157) Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2;; (*TAIR) AT5G26250.1 (e_value=7e-158) | Symbols: | Major facilitator superfamily protein | chr5:9196758-9198681 FORWARD LENGTH=507;; (*ITAG) Solyc06g054270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33568688-33571416 transcript_region:SL2.40ch06:33568688..33571416- go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 5 (AHRD V1 ***- GTR5_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00008798g0006.1 protein AED:0.14 eAED:0.15 QI:316|0.5|0.72|0.90|0.3|0.54|11|636|403; (*GB) gi|255581007|ref|XP_002531321.1| (e_value=4e-168) aspartate aminotransferase, putative [Ricinus communis];; (*SWP) sp|P46643|AAT1_ARATH (e_value=1e-149) Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1;; (*TAIR) AT2G30970.2 (e_value=9e-151) | Symbols: ASP1 | aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430;; (*ITAG) Solyc10g075170.1.1 (e_value=9e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58215934-58220414 transcript_region:SL2.40ch10:58215934..58220414+ go_terms:GO:0006520,GO:0009058,GO:0030170 functional_description:"Aspartate aminotransferase (AHRD V1 ***- B9HDA1_POPTR); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0006520,GO:0009058,GO:0030170 NbS00008798g0011.1 protein AED:0.50 eAED:0.50 QI:25|0.25|0.2|0.4|0.75|0.8|5|0|158 NbS00008798g0010.1 protein AED:0.27 eAED:0.53 QI:0|0|0|1|0|0|3|0|424; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-41) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-68) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00037466g0010.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|185; (*GB) gi|388514209|gb|AFK45166.1| (e_value=3e-60) unknown [Lotus japonicus];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=2e-61) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=3e-61) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=4e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00037466g0013.1 protein AED:0.08 eAED:0.08 QI:144|1|1|1|1|1|3|389|96; (*GB) gi|225425350|ref|XP_002275228.1| (e_value=5e-47) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FIJ2|NDUA2_ARATH (e_value=1e-44) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=2 SV=1;; (*TAIR) AT5G47890.1 (e_value=1e-45) | Symbols: | NADH-ubiquinone oxidoreductase B8 subunit, putative | chr5:19388806-19390409 FORWARD LENGTH=97;; (*ITAG) Solyc06g075810.2.1 (e_value=6e-61) genomic_reference:SL2.40ch06 gene_region:43496989-43498602 transcript_region:SL2.40ch06:43496989..43498602- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** C1BWM4_ESOLU); contains Interpro domain(s) IPR016464 NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 "; GO:0008137 NbS00037466g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.71|0.5|1|0.71|0.37|8|0|509; (*GB) gi|225435008|ref|XP_002281203.1| (e_value=4e-164) PREDICTED: uncharacterized protein LOC100248378 [Vitis vinifera];; (*TAIR) AT3G46450.1 (e_value=3e-153) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486;; (*ITAG) Solyc06g075980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43563647-43569037 transcript_region:SL2.40ch06:43563647..43569037- go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein (AHRD V1 **-- B6U4K1_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00037466g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00012376g0011.1 protein AED:0.21 eAED:0.25 QI:0|1|0.5|1|1|1|2|229|469; (*GB) gi|255538230|ref|XP_002510180.1| (e_value=1e-161) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G06536.1 (e_value=2e-49) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr4:3360746-3361255 FORWARD LENGTH=169;; (*ITAG) Solyc04g078630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60908009-60911019 transcript_region:SL2.40ch04:60908009..60911019- functional_description:"SPRY domain-containing protein (AHRD V1 *-*- B6JYC6_SCHJY)"; NbS00012376g0012.1 protein AED:0.27 eAED:0.27 QI:65|0.5|1|1|1|1|3|249|81; (*GB) gi|147790674|emb|CAN61018.1| (e_value=6e-29) hypothetical protein VITISV_001138 [Vitis vinifera];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=8e-29) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=6e-30) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc04g078620.2.1 (e_value=3e-34) genomic_reference:SL2.40ch04 gene_region:60902088-60906206 transcript_region:SL2.40ch04:60902088..60906206+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00006054g0011.1 protein AED:0.20 eAED:0.24 QI:0|1|0.75|1|1|1|4|0|460; (*GB) gi|156070798|gb|ABU45210.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-94) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT3G50700.1 (e_value=4e-105) | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840945-18842829 FORWARD LENGTH=452;; (*ITAG) Solyc02g085580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42989617-42992448 transcript_region:SL2.40ch02:42989617..42992448+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU5_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00006054g0003.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=1e-28) BAC19.12 [Solanum lycopersicum];; (*TAIR) AT3G50700.1 (e_value=3e-11) | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840945-18842829 FORWARD LENGTH=452;; (*ITAG) Solyc02g085580.2.1 (e_value=3e-31) genomic_reference:SL2.40ch02 gene_region:42989617-42992448 transcript_region:SL2.40ch02:42989617..42992448+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU5_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00006054g0004.1 protein AED:0.03 eAED:0.03 QI:106|0.66|0.75|1|0.33|0.75|4|146|733; (*GB) gi|156070784|gb|ABU45197.1| (e_value=0.0) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SPL4|AMP22_MACIN (e_value=6e-18) Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1;; (*TAIR) AT2G18540.1 (e_value=1e-113) | Symbols: | RmlC-like cupins superfamily protein | chr2:8042382-8045008 REVERSE LENGTH=707;; (*ITAG) Solyc02g085590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42996198-42999034 transcript_region:SL2.40ch02:42996198..42999034- go_terms:GO:0045735 functional_description:"Vicilin (Fragment) (AHRD V1 *--- B4X640_PISVE); contains Interpro domain(s) IPR011051 Cupin, RmlC-type "; GO:0045735 NbS00001779g0012.1 protein AED:0.33 eAED:0.37 QI:89|0.4|0.33|1|0.6|0.5|6|0|346; (*GB) gi|255569802|ref|XP_002525865.1| (e_value=3e-81) amidase, putative [Ricinus communis];; (*SWP) sp|F4KCL7|OE64M_ARATH (e_value=6e-73) Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1;; (*TAIR) AT5G09420.1 (e_value=5e-74) | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64 | translocon at the outer membrane of chloroplasts 64-V | chr5:2928316-2931750 FORWARD LENGTH=603;; (*ITAG) Solyc10g047300.1.1 (e_value=1e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35957327-35976314 transcript_region:SL2.40ch10:35957327..35976314+ go_terms:GO:0005515,GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 *-*- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0005515,GO:0004040 NbS00001779g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|96 NbS00001779g0009.1 protein AED:0.47 eAED:0.79 QI:0|0|0|1|1|1|2|0|93 NbS00001779g0013.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|98; (*ITAG) Solyc05g033910.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:46423905-46425314 transcript_region:SL2.40ch05:46423905..46425314+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002140g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|296; (*GB) gi|350537681|ref|NP_001234304.1| (e_value=2e-155) phosphoenolpyruvate carboxylase kinase 2 [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=9e-95) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.2 (e_value=5e-96) | Symbols: PPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753150 FORWARD LENGTH=276;; (*ITAG) Solyc09g090090.1.1 (e_value=2e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64987903-64989848 transcript_region:SL2.40ch09:64987903..64989848- go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002140g0010.1 protein AED:0.12 eAED:0.12 QI:98|1|1|1|0.5|0.66|3|586|146; (*GB) gi|24745620|dbj|BAC23034.1| (e_value=4e-100) actin depolymerizing factor 6 [Solanum tuberosum];; (*SWP) sp|Q9ZSK2|ADF6_ARATH (e_value=6e-85) Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1;; (*TAIR) AT2G31200.1 (e_value=5e-86) | Symbols: ADF6, ATADF6 | actin depolymerizing factor 6 | chr2:13294171-13294948 FORWARD LENGTH=146;; (*ITAG) Solyc09g090110.2.1 (e_value=3e-103) genomic_reference:SL2.40ch09 gene_region:64996922-65000393 transcript_region:SL2.40ch09:64996922..65000393- go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 6 (AHRD V1 **** Q8H9D5_SOLTU); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00002140g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|1|1|4|0|643; (*GB) gi|78217443|gb|ABB36797.1| (e_value=0.0) cryptochrome 2 [Nicotiana sylvestris];; (*SWP) sp|Q96524|CRY2_ARATH (e_value=0.0) Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2;; (*TAIR) AT1G04400.1 (e_value=0.0) | Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 | cryptochrome 2 | chr1:1185719-1187901 REVERSE LENGTH=612;; (*ITAG) Solyc09g090100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64991108-64994921 transcript_region:SL2.40ch09:64991108..64994921- go_terms:GO:0042803 functional_description:"Cryptochrome 2"; GO:0042803 NbS00046031g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.94|0.85|1|0.84|0.85|20|0|1226; (*GB) gi|350534526|ref|NP_001233889.1| (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum];; (*SWP) sp|Q42877|RPB2_SOLLC (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1;; (*TAIR) AT4G21710.1 (e_value=0.0) | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA polymerase family protein | chr4:11535684-11542200 REVERSE LENGTH=1188;; (*ITAG) Solyc02g078260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37583500-37591044 transcript_region:SL2.40ch02:37583500..37591044+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Y9_PETHY); contains Interpro domain(s) IPR007121 RNA polymerase, beta subunit, conserved site IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00055166g0004.1 protein AED:0.26 eAED:0.26 QI:63|1|0|1|0|0.5|2|0|82; (*GB) gi|255555295|ref|XP_002518684.1| (e_value=3e-39) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SHU7|TIC21_ARATH (e_value=4e-33) Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1;; (*TAIR) AT2G15290.1 (e_value=3e-34) | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon at inner membrane of chloroplasts 21 | chr2:6642512-6644011 REVERSE LENGTH=296;; (*ITAG) Solyc01g107640.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:86881312-86885702 transcript_region:SL2.40ch01:86881312..86885702- go_terms:GO:0042803,GO:0015088,GO:0005381 functional_description:"Tic21 (AHRD V1 **-- Q09S70_PEA)"; GO:0042803,GO:0015088,GO:0005381 NbS00055166g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|336; (*GB) gi|147779745|emb|CAN76115.1| (e_value=3e-169) hypothetical protein VITISV_026936 [Vitis vinifera];; (*SWP) sp|A7RFT2|CD123_NEMVE (e_value=2e-64) Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1;; (*TAIR) AT4G05440.1 (e_value=3e-134) | Symbols: EDA35 | temperature sensing protein-related | chr4:2757274-2758275 FORWARD LENGTH=333;; (*ITAG) Solyc01g107630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86878462-86880092 transcript_region:SL2.40ch01:86878462..86880092+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 123-like protein (AHRD V1 ***- B6S349_9BILA); contains Interpro domain(s) IPR009772 D123 "; GO:0005515 NbS00027042g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|195; (*GB) gi|224132040|ref|XP_002328170.1| (e_value=5e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|P19243|HSP11_PEA (e_value=3e-30) 18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1;; (*TAIR) AT2G29500.1 (e_value=9e-26) | Symbols: | HSP20-like chaperones superfamily protein | chr2:12633279-12633740 REVERSE LENGTH=153;; (*ITAG) Solyc10g086680.1.1 (e_value=2e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64777396-64778100 transcript_region:SL2.40ch10:64777396..64778100- functional_description:"class I heat shock protein (AHRD V1 *-*- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00030254g0006.1 protein AED:0.14 eAED:0.14 QI:11|1|0.5|1|1|0.5|2|125|11 NbS00030254g0005.1 protein AED:0.00 eAED:0.06 QI:0|0|0|1|0|0|2|0|932; (*GB) gi|297742027|emb|CBI33814.3| (e_value=8e-100) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G35540.1 (e_value=2e-67) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:14927158-14928930 FORWARD LENGTH=590;; (*ITAG) Solyc08g005300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:229428-232250 transcript_region:SL2.40ch08:229428..232250+ go_terms:GO:0006508,GO:0006457,GO:0031072 functional_description:"Chaperone DnaJ (AHRD V1 *-*- A8URH8_9AQUI); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006508,GO:0006457,GO:0031072 NbS00029539g0005.1 protein AED:0.39 eAED:0.42 QI:61|0.75|0.8|1|1|1|5|468|58 NbS00004433g0005.1 protein AED:0.10 eAED:0.10 QI:143|0.91|0.91|1|0.78|0.75|24|415|753; (*GB) gi|224143622|ref|XP_002325019.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54NM9|STT3_DICDI (e_value=0.0) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 OS=Dictyostelium discoideum GN=stt3 PE=3 SV=1;; (*TAIR) AT5G19690.1 (e_value=0.0) | Symbols: STT3A | staurosporin and temperature sensitive 3-like A | chr5:6652649-6658214 FORWARD LENGTH=779;; (*ITAG) Solyc12g008360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1785951-1798278 transcript_region:SL2.40ch12:1785951..1798278- go_terms:GO:0016020 functional_description:"Oligosaccharyl transferase STT3 subunit family protein (AHRD V1 ***- Q23H40_TETTH); contains Interpro domain(s) IPR003674 Oligosaccharyl transferase, STT3 subunit "; GO:0016020 NbS00053330g0008.1 protein AED:0.21 eAED:0.30 QI:60|0.81|0.83|1|0.90|0.75|12|0|428; (*GB) gi|359491066|ref|XP_002279926.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266414 [Vitis vinifera];; (*SWP) sp|Q503W7|ATD1B_DANRE (e_value=3e-73) ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2;; (*TAIR) AT1G02890.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1246;; (*ITAG) Solyc03g110900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55671361-55690483 transcript_region:SL2.40ch03:55671361..55690483- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_DANRE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00053330g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|359491556|ref|XP_002280115.2| (e_value=9e-44) PREDICTED: uncharacterized protein LOC100254191 [Vitis vinifera];; (*TAIR) AT4G24910.1 (e_value=3e-34) | Symbols: | Protein of unknown function (DUF579) | chr4:12817954-12818901 REVERSE LENGTH=315;; (*ITAG) Solyc03g110890.1.1 (e_value=4e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55669119-55670024 transcript_region:SL2.40ch03:55669119..55670024- go_terms:GO:0005515 functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV28_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; GO:0005515 NbS00011496g0007.1 protein AED:0.19 eAED:0.19 QI:129|0.8|0.66|1|0.8|0.66|6|171|1111; (*GB) gi|8671350|emb|CAB95025.1| (e_value=0.0) pectin methylesterase [Nicotiana tabacum];; (*SWP) sp|Q43143|PMEU1_SOLLC (e_value=0.0) Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1;; (*TAIR) AT3G14310.1 (e_value=0.0) | Symbols: ATPME3, PME3 | pectin methylesterase 3 | chr3:4772214-4775095 REVERSE LENGTH=592;; (*ITAG) Solyc03g123630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64478109-64481386 transcript_region:SL2.40ch03:64478109..64481386- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q564D7_SOLLC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00011496g0008.1 protein AED:0.23 eAED:0.26 QI:210|0.75|0.82|1|0.68|0.76|17|88|615; (*GB) gi|37953301|gb|AAR05449.1| (e_value=0.0) alanine aminotransferase [Capsicum annuum];; (*SWP) sp|Q9LDV4|ALAT2_ARATH (e_value=0.0) Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1;; (*TAIR) AT1G72330.1 (e_value=0.0) | Symbols: ALAAT2 | alanine aminotransferase 2 | chr1:27233637-27236571 FORWARD LENGTH=540;; (*ITAG) Solyc06g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36234795-36239218 transcript_region:SL2.40ch06:36234795..36239218- go_terms:GO:0005524,GO:0004021 functional_description:"Alanine aminotransferase (AHRD V1 **** Q6VEJ5_CAPAN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0005524,GO:0004021 NbS00004697g0005.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|31074969|gb|AAP42136.1| (e_value=3e-75) erg-1 [Solanum tuberosum];; (*TAIR) AT5G64260.1 (e_value=1e-51) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc01g105410.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:85348461-85349698 transcript_region:SL2.40ch01:85348461..85349698+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00004697g0001.1 protein AED:0.37 eAED:0.51 QI:45|-1|0|1|-1|1|1|0|51; (*GB) gi|171854681|dbj|BAG16530.1| (e_value=7e-18) putative phosphate-induced protein [Capsicum chinense];; (*TAIR) AT5G64260.1 (e_value=4e-14) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc01g105410.2.1 (e_value=9e-21) genomic_reference:SL2.40ch01 gene_region:85348461-85349698 transcript_region:SL2.40ch01:85348461..85349698+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00004697g0002.1 protein AED:0.19 eAED:0.19 QI:1760|1|1|1|0.7|0.54|11|421|531; (*GB) gi|2398679|emb|CAA75092.1| (e_value=0.0) 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia];; (*SWP) sp|Q00218|AROG_ARATH (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2;; (*TAIR) AT4G33510.1 (e_value=0.0) | Symbols: DHS2 | 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase | chr4:16116496-16118549 FORWARD LENGTH=507;; (*ITAG) Solyc11g009080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3200299-3203598 transcript_region:SL2.40ch11:3200299..3203598+ go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 1 (AHRD V1 ***- B6TUB8_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0009073 NbS00048898g0016.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|373; (*GB) gi|225441054|ref|XP_002277869.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase SRPK1 [Vitis vinifera];; (*SWP) sp|P36616|DSK1_SCHPO (e_value=3e-91) Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=2 SV=2;; (*TAIR) AT3G53030.1 (e_value=3e-174) | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529;; (*ITAG) Solyc09g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2214074-2219739 transcript_region:SL2.40ch09:2214074..2219739- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U1C3_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00048898g0011.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|206; (*GB) gi|224069756|ref|XP_002326406.1| (e_value=1e-104) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=5e-96) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=3e-97) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc09g008820.2.1 (e_value=7e-127) genomic_reference:SL2.40ch09 gene_region:2243656-2248916 transcript_region:SL2.40ch09:2243656..2248916- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00048898g0015.1 protein AED:0.13 eAED:0.14 QI:2|0|0|1|0|0.5|2|0|178; (*GB) gi|255575467|ref|XP_002528635.1| (e_value=8e-64) homeobox protein, putative [Ricinus communis];; (*SWP) sp|Q9LZR0|ATB51_ARATH (e_value=3e-42) Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=2;; (*TAIR) AT5G03790.1 (e_value=3e-43) | Symbols: ATHB51, LMI1, HB51 | homeobox 51 | chr5:1004985-1006373 FORWARD LENGTH=235;; (*ITAG) Solyc09g008810.2.1 (e_value=2e-93) genomic_reference:SL2.40ch09 gene_region:2224847-2227824 transcript_region:SL2.40ch09:2224847..2227824- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00048898g0017.1 protein AED:0.13 eAED:0.13 QI:37|0.5|0.4|0.8|0.25|0.6|5|303|146; (*GB) gi|82400154|gb|ABB72816.1| (e_value=2e-61) ribosomal protein L24-like protein [Solanum tuberosum];; (*SWP) sp|O65743|RL24_CICAR (e_value=1e-60) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT2G36620.1 (e_value=1e-59) | Symbols: RPL24A | ribosomal protein L24 | chr2:15350548-15351819 REVERSE LENGTH=164;; (*ITAG) Solyc10g083740.1.1 (e_value=9e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62828065-62829671 transcript_region:SL2.40ch10:62828065..62829671- go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00038088g0004.1 protein AED:0.22 eAED:0.22 QI:120|0.85|0.87|1|0.71|0.62|8|390|434; (*GB) gi|359491815|ref|XP_002264379.2| (e_value=0.0) PREDICTED: UPF0176 protein pc0378-like [Vitis vinifera];; (*SWP) sp|F4I933|STR8_ARATH (e_value=9e-175) Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=STR8 PE=2 SV=1;; (*TAIR) AT1G17850.1 (e_value=2e-177) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr1:6146470-6148820 REVERSE LENGTH=446;; (*ITAG) Solyc12g027800.1.1 (e_value=1e-84) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:20162983-20168206 transcript_region:SL2.40ch12:20162983..20168206- functional_description:"Rhodanese-like domain-containing protein (Fragment) (AHRD V1 *--- D7ULI0_LISMO)"; NbS00039805g0002.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.25|1|1|4|0|189; (*GB) gi|225455629|ref|XP_002271172.1| (e_value=2e-44) PREDICTED: transcription factor bHLH120 [Vitis vinifera];; (*SWP) sp|Q9STJ6|BH126_ARATH (e_value=3e-36) Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1;; (*TAIR) AT4G25410.1 (e_value=2e-37) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:12985772-12987149 FORWARD LENGTH=230;; (*ITAG) Solyc03g006910.2.1 (e_value=3e-41) genomic_reference:SL2.40ch03 gene_region:1472793-1474660 transcript_region:SL2.40ch03:1472793..1474660- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 **** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00039805g0004.1 protein AED:0.74 eAED:0.88 QI:0|0|0|0.75|1|1|4|0|390; (*ITAG) Solyc01g017760.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007578g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|209954725|dbj|BAG80553.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=2e-128) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT5G49690.1 (e_value=9e-63) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc03g071850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:41956163-41957524 transcript_region:SL2.40ch03:41956163..41957524+ go_terms:GO:0016757 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *-*- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00007578g0023.1 protein AED:0.09 eAED:0.09 QI:57|0.69|0.71|1|0.38|0.35|14|523|471; (*GB) gi|225450462|ref|XP_002276683.1| (e_value=1e-167) PREDICTED: serine/threonine-protein kinase haspin-like [Vitis vinifera];; (*SWP) sp|Q2KIP2|HASP_BOVIN (e_value=4e-26) Serine/threonine-protein kinase haspin OS=Bos taurus GN=GSG2 PE=2 SV=1;; (*TAIR) AT1G09450.1 (e_value=3e-131) | Symbols: | Protein kinase superfamily protein | chr1:3049066-3052858 FORWARD LENGTH=599;; (*ITAG) Solyc01g101110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82721364-82727829 transcript_region:SL2.40ch01:82721364..82727829+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase Haspin (AHRD V1 *--- B6JWA5_SCHJY); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00007578g0018.1 protein AED:0.27 eAED:0.29 QI:151|0.5|0.53|0.84|0.58|0.61|13|0|435; (*GB) gi|359488352|ref|XP_003633745.1| (e_value=0.0) PREDICTED: EVI5-like protein-like [Vitis vinifera];; (*SWP) sp|Q96CN4|EVI5L_HUMAN (e_value=1e-57) EVI5-like protein OS=Homo sapiens GN=EVI5L PE=1 SV=1;; (*TAIR) AT5G15930.1 (e_value=0.0) | Symbols: PAM1 | plant adhesion molecule 1 | chr5:5200329-5202250 FORWARD LENGTH=356;; (*ITAG) Solyc01g101090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82700183-82706494 transcript_region:SL2.40ch01:82700183..82706494+ go_terms:GO:0005097,GO:0030165 functional_description:"TBC1 domain family member CG11727 (AHRD V1 **-* Y1727_DROME); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005097,GO:0030165 NbS00007578g0006.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|93 NbS00007578g0028.1 protein AED:0.15 eAED:0.15 QI:1030|1|1|1|0.71|0.75|8|415|507; (*GB) gi|225450464|ref|XP_002280159.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At2g42960 [Vitis vinifera];; (*SWP) sp|Q8LEB6|Y5185_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g18500 OS=Arabidopsis thaliana GN=At5g18500 PE=1 SV=1;; (*TAIR) AT1G56720.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:21263630-21265559 REVERSE LENGTH=492;; (*ITAG) Solyc01g101100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82707636-82712173 transcript_region:SL2.40ch01:82707636..82712173- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007578g0020.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|125; (*GB) gi|75321780|sp|Q5W274.1|PDR3_TOBAC (e_value=7e-72) RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3;; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=2e-73) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1;; (*TAIR) AT3G53480.1 (e_value=6e-54) | Symbols: PIS1, PDR9, ATPDR9, ABCG37 | pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450;; (*ITAG) Solyc01g101070.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:82682230-82692010 transcript_region:SL2.40ch01:82682230..82692010- go_terms:GO:0042626 functional_description:"ABC transporter G family member 37 (AHRD V1 ***- AB37G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00007578g0026.1 protein AED:0.37 eAED:0.53 QI:0|0|0|1|0|0|3|0|131 NbS00052789g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.7|1|1|1|10|0|878; (*GB) gi|350537385|ref|NP_001234547.1| (e_value=0.0) AML1 [Solanum lycopersicum];; (*SWP) sp|Q64M78|OML4_ORYSJ (e_value=0.0) Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1;; (*TAIR) AT5G61960.2 (e_value=0.0) | Symbols: AML1, ML1 | MEI2-like protein 1 | chr5:24879001-24883483 REVERSE LENGTH=915;; (*ITAG) Solyc05g023740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29171601-29178176 transcript_region:SL2.40ch05:29171601..29178176+ go_terms:GO:0005515,GO:0003723 functional_description:"MEI2-like RNA binding protein (AHRD V1 **-* Q64M78_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0005515,GO:0003723 NbS00006663g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.25|0.2|0.6|0|0.4|5|0|319; (*GB) gi|225423901|ref|XP_002278787.1| (e_value=2e-115) PREDICTED: protein TRANSPARENT TESTA 1-like [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=2e-86) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT1G13290.1 (e_value=3e-105) | Symbols: DOT5, WIP6 | C2H2-like zinc finger protein | chr1:4550366-4551527 REVERSE LENGTH=302;; (*ITAG) Solyc05g009770.1.1 (e_value=2e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3967598-3969256 transcript_region:SL2.40ch05:3967598..3969256+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KQE1_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00047506g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|539; (*GB) gi|225429770|ref|XP_002280575.1| (e_value=5e-148) PREDICTED: uncharacterized protein LOC100262813 [Vitis vinifera];; (*TAIR) AT5G25500.1 (e_value=5e-116) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047506g0001.1 protein AED:0.55 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225429770|ref|XP_002280575.1| (e_value=2e-27) PREDICTED: uncharacterized protein LOC100262813 [Vitis vinifera];; (*TAIR) AT5G25500.1 (e_value=2e-21) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015728g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|225432360|ref|XP_002275384.1| (e_value=2e-43) PREDICTED: monothiol glutaredoxin-S2 [Vitis vinifera];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=8e-44) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=6e-45) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc06g054570.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33806515-33806826 transcript_region:SL2.40ch06:33806515..33806826+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7LYE9_ARALY); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00015728g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|0.33|0.25|4|0|249; (*GB) gi|147789462|emb|CAN77823.1| (e_value=2e-79) hypothetical protein VITISV_043444 [Vitis vinifera];; (*TAIR) AT2G39100.1 (e_value=2e-64) | Symbols: | RING/U-box superfamily protein | chr2:16317462-16318869 FORWARD LENGTH=296;; (*ITAG) Solyc06g054580.2.1 (e_value=1e-131) genomic_reference:SL2.40ch06 gene_region:33808186-33810880 transcript_region:SL2.40ch06:33808186..33810880+ go_terms:GO:0006310,GO:0008270 functional_description:"Trans-acting transcriptional protein ICP0 (AHRD V1 *--- ICP0_BHV1K); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006310,GO:0008270 NbS00015728g0011.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.6|1|1|1|5|0|426; (*GB) gi|147818474|emb|CAN74119.1| (e_value=2e-111) hypothetical protein VITISV_002050 [Vitis vinifera];; (*SWP) sp|Q5NAW2|C3H6_ORYSJ (e_value=3e-92) Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2;; (*TAIR) AT2G47850.2 (e_value=1e-92) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=442;; (*ITAG) Solyc01g067550.2.1 (e_value=7e-145) genomic_reference:SL2.40ch01 gene_region:68690543-68697003 transcript_region:SL2.40ch01:68690543..68697003- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 58 (AHRD V1 ***- C3H58_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00050025g0004.1 protein AED:0.03 eAED:0.03 QI:8|0.5|0.66|1|0|0.66|3|244|207; (*GB) gi|169667045|gb|ACA64095.1| (e_value=5e-115) WOX4 [Petunia x hybrida];; (*SWP) sp|Q6X7J9|WOX4_ARATH (e_value=1e-54) WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana GN=WOX4 PE=2 SV=1;; (*TAIR) AT1G46480.1 (e_value=9e-56) | Symbols: WOX4 | WUSCHEL related homeobox 4 | chr1:17236903-17237953 REVERSE LENGTH=251;; (*ITAG) Solyc04g078650.2.1 (e_value=2e-108) genomic_reference:SL2.40ch04 gene_region:60938439-60939862 transcript_region:SL2.40ch04:60938439..60939862- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 ***- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00025247g0001.1 protein AED:0.11 eAED:0.26 QI:151|0|0.5|1|0|0.5|2|790|121; (*GB) gi|365818517|gb|AEX00347.1| (e_value=2e-63) IAA1 [Solanum lycopersicum];; (*SWP) sp|O24542|AX22D_VIGRR (e_value=2e-55) Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1;; (*TAIR) AT5G43700.1 (e_value=3e-56) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g083280.2.1 (e_value=4e-66) genomic_reference:SL2.40ch09 gene_region:64330790-64332575 transcript_region:SL2.40ch09:64330790..64332575- go_terms:GO:0017075 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0017075 NbS00048854g0004.1 protein AED:0.21 eAED:0.23 QI:51|1|0.5|1|1|1|4|0|725; (*GB) gi|169647567|gb|ACA61780.1| (e_value=0.0) BIPINNATA [Solanum lycopersicum];; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=8e-136) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=6e-137) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc02g089940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46203178-46209064 transcript_region:SL2.40ch02:46203178..46209064+ go_terms:GO:0005515,GO:0003677 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 **-- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005515,GO:0003677 NbS00020432g0013.1 protein AED:0.33 eAED:0.30 QI:143|1|0.87|1|0.8|0.68|16|359|544; (*GB) gi|359493020|ref|XP_002264907.2| (e_value=0.0) PREDICTED: histidinol dehydrogenase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C5U8|HISX_ARATH (e_value=0.0) Histidinol dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=HDH PE=2 SV=1;; (*TAIR) AT5G63890.2 (e_value=0.0) | Symbols: ATHDH, HISN8, HDH | histidinol dehydrogenase | chr5:25565600-25568104 REVERSE LENGTH=466;; (*ITAG) Solyc02g071890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35843032-35848958 transcript_region:SL2.40ch02:35843032..35848958+ go_terms:GO:0004399 functional_description:"Histidinol dehydrogenase (AHRD V1 **** B9GH07_POPTR); contains Interpro domain(s) IPR012131 Histidinol dehydrogenase, prokaryotic-type "; GO:0004399 NbS00020432g0004.1 protein AED:0.22 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-24) hypothetical protein [Nicotiana tabacum]; NbS00020432g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|114; (*ITAG) Solyc06g071760.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:40588092-40588433 transcript_region:SL2.40ch06:40588092..40588433+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020432g0012.1 protein AED:0.18 eAED:0.18 QI:398|1|1|1|1|1|3|651|525; (*GB) gi|255540519|ref|XP_002511324.1| (e_value=0.0) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|O61967|LAP1_CAEEL (e_value=2e-29) Protein lap1 OS=Caenorhabditis elegans GN=let-413 PE=1 SV=3;; (*TAIR) AT5G05850.1 (e_value=2e-162) | Symbols: PIRL1 | plant intracellular ras group-related LRR 1 | chr5:1762691-1764609 REVERSE LENGTH=506;; (*ITAG) Solyc03g112270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56776658-56780829 transcript_region:SL2.40ch03:56776658..56780829- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00001976g0003.1 protein AED:0.05 eAED:0.05 QI:383|0.92|0.93|1|0.64|0.86|15|600|603; (*GB) gi|225443738|ref|XP_002265546.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241189 [Vitis vinifera];; (*TAIR) AT4G18810.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:10322622-10325735 REVERSE LENGTH=596;; (*ITAG) Solyc02g072160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36050355-36058273 transcript_region:SL2.40ch02:36050355..36058273+ go_terms:GO:0008152 functional_description:"NADH ubiquinone oxidoreductase complex I intermediate-associated protein 30 (AHRD V1 **-- B2IZH1_NOSP7); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 "; GO:0008152 NbS00030202g0001.1 protein AED:0.33 eAED:0.52 QI:226|0.5|0.66|1|0|0|3|0|23 NbS00061239g0012.1 protein AED:0.16 eAED:0.16 QI:172|0.75|0.6|0.8|0.5|0.4|5|0|219; (*GB) gi|356574908|ref|XP_003555585.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100778316 [Glycine max];; (*TAIR) AT2G40020.2 (e_value=3e-15) | Symbols: | Nucleolar histone methyltransferase-related protein | chr2:16711420-16712592 FORWARD LENGTH=182;; (*ITAG) Solyc06g030540.2.1 (e_value=4e-16) genomic_reference:SL2.40ch06 gene_region:16068615-16069177 transcript_region:SL2.40ch06:16068615..16069177- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018848 WIYLD domain "; NbS00021224g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|0|0|3|0|163; (*GB) gi|326532018|dbj|BAK01385.1| (e_value=2e-24) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|B6TZ45|CNR1_MAIZE (e_value=2e-25) Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1;; (*TAIR) AT3G18450.1 (e_value=7e-24) | Symbols: | PLAC8 family protein | chr3:6331229-6332118 REVERSE LENGTH=184;; (*ITAG) Solyc08g013910.2.1 (e_value=1e-74) genomic_reference:SL2.40ch08 gene_region:3292547-3294562 transcript_region:SL2.40ch08:3292547..3294562+ functional_description:"Cell number regulator 1 (AHRD V1 **-- B6TZ45_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00044499g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|1|1|4|0|319; (*GB) gi|225444399|ref|XP_002268360.1| (e_value=1e-161) PREDICTED: peroxidase 27 isoform 1 [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=7e-139) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=5e-140) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc12g005370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:220123-222070 transcript_region:SL2.40ch12:220123..222070- go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00044499g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|125; (*ITAG) Solyc01g057740.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00042092g0009.1 protein AED:0.26 eAED:0.91 QI:0|0|0|0.75|0|0.25|4|0|754; (*GB) gi|225436658|ref|XP_002276327.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Vitis vinifera];; (*SWP) sp|Q9SUD8|PP340_ARATH (e_value=1e-171) Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1;; (*TAIR) AT4G28010.1 (e_value=8e-173) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13930379-13932493 FORWARD LENGTH=704;; (*ITAG) Solyc11g073270.1.1 (e_value=3e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049750g0006.1 protein AED:0.21 eAED:0.21 QI:95|0.90|0.91|1|0.72|0.66|12|194|427; (*GB) gi|225438287|ref|XP_002269415.1| (e_value=0.0) PREDICTED: beta-1,3-galactosyltransferase 7 [Vitis vinifera];; (*SWP) sp|Q6NQB7|B3GT7_ARATH (e_value=1e-171) Beta-1,3-galactosyltransferase 7 OS=Arabidopsis thaliana GN=B3GALT7 PE=2 SV=1;; (*TAIR) AT1G77810.2 (e_value=2e-177) | Symbols: | Galactosyltransferase family protein | chr1:29260899-29263001 REVERSE LENGTH=384;; (*ITAG) Solyc08g069060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55354098-55359018 transcript_region:SL2.40ch08:55354098..55359018+ go_terms:GO:0048531 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0048531 NbS00055114g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.8|1|0.75|0.6|5|616|291; (*GB) gi|255580361|ref|XP_002531008.1| (e_value=2e-65) diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=5e-63) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=4e-64) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc11g011360.1.1 (e_value=9e-123) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4399558-4401854 transcript_region:SL2.40ch11:4399558..4401854- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 **-- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00009387g0001.1 protein AED:0.34 eAED:0.40 QI:0|0|0|0.75|1|1|4|0|132; (*GB) gi|224076058|ref|XP_002304893.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT1G51130.1 (e_value=2e-20) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc12g041890.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40943251-40945691 transcript_region:SL2.40ch12:40943251..40945691- functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 *--- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00009387g0006.1 protein AED:0.18 eAED:0.20 QI:21|0.72|0.58|1|0.72|0.75|12|0|440; (*GB) gi|2204234|emb|CAA74177.1| (e_value=0.0) enoyl-ACP reductase [Nicotiana tabacum];; (*SWP) sp|P80030|FABI_BRANA (e_value=7e-156) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2;; (*TAIR) AT2G05990.2 (e_value=4e-162) | Symbols: MOD1, ENR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390;; (*ITAG) Solyc01g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1058119-1063305 transcript_region:SL2.40ch01:1058119..1063305+ go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl reductase (AHRD V1 ***- P93062_BRANA); contains Interpro domain(s) IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) "; GO:0008152,GO:0055114 NbS00021644g0011.1 protein AED:0.30 eAED:0.30 QI:129|0.8|0.83|1|1|1|6|0|430; (*GB) gi|356521983|ref|XP_003529629.1| (e_value=2e-169) PREDICTED: RNA-binding post-transcriptional regulator csx1-like [Glycine max];; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=6e-153) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT1G11650.2 (e_value=5e-154) | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:3914895-3917941 FORWARD LENGTH=405;; (*ITAG) Solyc03g031720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8453484-8459499 transcript_region:SL2.40ch03:8453484..8459499- go_terms:GO:0005515 functional_description:"RNA Binding Protein 45 (AHRD V1 **** Q9LEB4_NICPL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00021644g0015.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0.5|0.33|3|0|372; (*ITAG) Solyc03g031710.1.1 (e_value=1e-99) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:8449848-8451999 transcript_region:SL2.40ch03:8449848..8451999+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 *--- Q9FFT7_ARATH)"; NbS00021644g0014.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|57013917|ref|YP_173390.1| (e_value=5e-70) hypothetical protein NitaMp044 [Nicotiana tabacum]; NbS00041069g0013.1 protein AED:0.01 eAED:0.02 QI:0|0.5|0.2|1|0.75|0.6|5|0|1975; (*GB) gi|296087607|emb|CBI34863.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5VU65|P210L_HUMAN (e_value=3e-51) Nuclear pore membrane glycoprotein 210-like OS=Homo sapiens GN=NUP210L PE=2 SV=1;; (*TAIR) AT5G40480.1 (e_value=0.0) | Symbols: EMB3012 | embryo defective 3012 | chr5:16213361-16223982 FORWARD LENGTH=1923;; (*ITAG) Solyc02g070810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34985924-34993977 transcript_region:SL2.40ch02:34985924..34993977- go_terms:GO:0032259,GO:0006810 functional_description:"Nuclear pore membrane glycoprotein 210 (AHRD V1 ***- PO210_HUMAN); contains Interpro domain(s) IPR008964 Invasin/intimin cell-adhesion "; GO:0032259,GO:0006810 NbS00041069g0001.1 protein AED:0.06 eAED:0.06 QI:146|1|1|1|0.85|0.75|8|499|469; (*GB) gi|255557353|ref|XP_002519707.1| (e_value=0.0) 50 kDa ketoavyl-ACP synthase [Ricinus communis];; (*SWP) sp|P52410|KASC1_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.1 (e_value=0.0) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=473;; (*ITAG) Solyc02g070790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34974215-34978260 transcript_region:SL2.40ch02:34974215..34978260- go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase 2 (AHRD V1 **** D0ZZB8_CHLPP); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00041069g0016.1 protein AED:0.06 eAED:0.07 QI:80|0.82|0.88|0.94|0.88|0.88|18|237|806; (*GB) gi|225463458|ref|XP_002276065.1| (e_value=0.0) PREDICTED: DNA replication licensing factor MCM3 homolog 1-like [Vitis vinifera];; (*SWP) sp|Q43704|MCM31_MAIZE (e_value=0.0) DNA replication licensing factor MCM3 homolog 1 OS=Zea mays GN=ROA1 PE=2 SV=2;; (*TAIR) AT5G46280.1 (e_value=0.0) | Symbols: MCM3 | Minichromosome maintenance (MCM2/3/5) family protein | chr5:18769902-18773606 REVERSE LENGTH=776;; (*ITAG) Solyc02g070780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34965194-34971684 transcript_region:SL2.40ch02:34965194..34971684- go_terms:GO:0043140 functional_description:"DNA replication licensing factor MCM3 (AHRD V1 **** Q16NY8_AEDAE); contains Interpro domain(s) IPR008046 MCM protein 3 "; GO:0043140 NbS00041069g0005.1 protein AED:0.34 eAED:0.34 QI:0|0.87|0.77|1|1|1|9|0|295; (*GB) gi|255557357|ref|XP_002519709.1| (e_value=7e-127) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q1XDB4|YCF23_PORYE (e_value=5e-44) Uncharacterized protein ycf23 OS=Porphyra yezoensis GN=ycf23 PE=3 SV=1;; (*ITAG) Solyc02g070800.2.1 (e_value=4e-150) genomic_reference:SL2.40ch02 gene_region:34982396-34985095 transcript_region:SL2.40ch02:34982396..34985095- functional_description:"Ycf23 protein (AHRD V1 ***- Q7NE74_GLOVI); contains Interpro domain(s) IPR007570 Protein of unknown function DUF561 "; NbS00041069g0012.1 protein AED:0.88 eAED:0.95 QI:0|0|0|0.4|1|1|5|0|149 NbS00019263g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|225438331|ref|XP_002273284.1| (e_value=2e-147) PREDICTED: uncharacterized protein LOC100250855 [Vitis vinifera];; (*TAIR) AT1G76870.1 (e_value=3e-69) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | chr1:28857250-28858407 FORWARD LENGTH=385;; (*ITAG) Solyc12g100040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65281062-65282444 transcript_region:SL2.40ch12:65281062..65282444- functional_description:"Os01g0318400 protein (Fragment) (AHRD V1 *-*- Q7XXQ7_ORYSJ)"; NbS00019263g0001.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|1|3|0|224; (*GB) gi|224057482|ref|XP_002299237.1| (e_value=2e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54G07|SLMO_DICDI (e_value=4e-21) Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1;; (*TAIR) AT5G13070.1 (e_value=8e-101) | Symbols: | MSF1-like family protein | chr5:4148216-4149062 FORWARD LENGTH=183;; (*ITAG) Solyc12g100050.1.1 (e_value=7e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65284796-65285353 transcript_region:SL2.40ch12:65284796..65285353- functional_description:"Slowmo homolog 2 (AHRD V1 **-- B5XGX8_SALSA); contains Interpro domain(s) IPR006797 PRELI/MSF1 "; NbS00026321g0001.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|423; (*GB) gi|224131898|ref|XP_002328135.1| (e_value=2e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|A4SGN0|KHSE_PROVI (e_value=3e-53) Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=3e-141) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00007619g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|330; (*GB) gi|357517395|ref|XP_003628986.1| (e_value=5e-169) Phosphatidylinositol alpha-mannosyltransferase [Medicago truncatula];; (*TAIR) AT4G19460.1 (e_value=1e-148) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:10610422-10611972 REVERSE LENGTH=516;; (*ITAG) Solyc08g074970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56269563-56271008 transcript_region:SL2.40ch08:56269563..56271008- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 **** A9B8A9_HERA2); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00018414g0008.1 protein AED:0.22 eAED:0.22 QI:885|1|0.8|1|1|1|5|0|341; (*GB) gi|297742528|emb|CBI34677.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G63470.1 (e_value=6e-53) | Symbols: | AT hook motif DNA-binding family protein | chr1:23536831-23538863 REVERSE LENGTH=378;; (*ITAG) Solyc08g008030.2.1 (e_value=1e-120) genomic_reference:SL2.40ch08 gene_region:2522295-2528486 transcript_region:SL2.40ch08:2522295..2528486- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00018414g0003.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|3|0|730; (*GB) gi|359474216|ref|XP_002272722.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264973 [Vitis vinifera];; (*TAIR) AT4G11610.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00018414g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|359474216|ref|XP_002272722.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264973 [Vitis vinifera];; (*TAIR) AT4G11610.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00037021g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|0.66|0.5|4|326|136; (*GB) gi|77999293|gb|ABB16993.1| (e_value=4e-86) unknown [Solanum tuberosum];; (*SWP) sp|P46297|RS23_FRAAN (e_value=3e-86) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=9e-84) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=8e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00037021g0012.1 protein AED:0.23 eAED:0.24 QI:35|0.11|0|0.9|0.33|0.2|10|0|991; (*GB) gi|297741556|emb|CBI32688.3| (e_value=4e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00020373g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|0|0.66|3|0|182; (*GB) gi|357465477|ref|XP_003603023.1| (e_value=4e-74) Dihydroflavonol-4-reductase [Medicago truncatula];; (*TAIR) AT4G33360.1 (e_value=6e-76) | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16067989-16069374 REVERSE LENGTH=344;; (*ITAG) Solyc12g088880.1.1 (e_value=4e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62523783-62527414 transcript_region:SL2.40ch12:62523783..62527414- go_terms:GO:0044237,GO:0008152 functional_description:"Epimerase/dehydratase (AHRD V1 ***- C7JBC7_ACEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00012456g0004.1 protein AED:0.19 eAED:0.19 QI:78|0.6|0.54|1|0.2|0.18|11|0|405; (*GB) gi|255554957|ref|XP_002518516.1| (e_value=1e-148) beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|Q9SVS1|BGL47_ARATH (e_value=4e-118) Beta-glucosidase 47 OS=Arabidopsis thaliana GN=BGLU47 PE=2 SV=2;; (*TAIR) AT4G21760.1 (e_value=3e-119) | Symbols: BGLU47 | beta-glucosidase 47 | chr4:11561229-11563871 FORWARD LENGTH=535;; (*ITAG) Solyc03g031730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8460776-8471920 transcript_region:SL2.40ch03:8460776..8471920- go_terms:GO:0004338 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00014175g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0.5|0.5|1|1|2|0|133; (*GB) gi|224131274|ref|XP_002328498.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT5G28750.1 (e_value=7e-16) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00022647g0004.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|1|1|2|120|258; (*GB) gi|224129664|ref|XP_002328772.1| (e_value=4e-34) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g103700.2.1 (e_value=4e-83) genomic_reference:SL2.40ch01 gene_region:84024082-84025180 transcript_region:SL2.40ch01:84024082..84025180+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00018058g0003.1 protein AED:0.08 eAED:0.08 QI:196|1|0.66|1|1|1|3|0|415; (*GB) gi|296087329|emb|CBI33703.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G23060.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:9812839-9814633 REVERSE LENGTH=413;; (*ITAG) Solyc02g092490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48123158-48125698 transcript_region:SL2.40ch02:48123158..48125698- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q7EYF5_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00032280g0001.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|57014003|ref|YP_173474.1| (e_value=1e-62) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=5e-38) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=1e-37) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00007559g0010.1 protein AED:0.13 eAED:0.13 QI:175|1|0.85|1|1|1|7|309|517; (*GB) gi|225458659|ref|XP_002282863.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g01540-like [Vitis vinifera];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT4G02630.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:1151683-1153161 FORWARD LENGTH=492;; (*ITAG) Solyc04g078700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60984325-60987884 transcript_region:SL2.40ch04:60984325..60987884+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q0WPA7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007559g0009.1 protein AED:0.33 eAED:0.33 QI:163|1|1|1|0.8|0.83|6|613|315; (*GB) gi|225458663|ref|XP_002284880.1| (e_value=5e-65) PREDICTED: transcription factor SPATULA [Vitis vinifera];; (*SWP) sp|Q9FUA4|SPT_ARATH (e_value=3e-34) Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1;; (*TAIR) AT4G36930.1 (e_value=3e-35) | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17414167-17415945 FORWARD LENGTH=373;; (*ITAG) Solyc04g078690.2.1 (e_value=3e-168) genomic_reference:SL2.40ch04 gene_region:60978513-60983322 transcript_region:SL2.40ch04:60978513..60983322+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00007559g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|91 NbS00029818g0009.1 protein AED:0.19 eAED:0.19 QI:179|0.68|0.69|0.92|0.92|0.88|26|353|1297; (*GB) gi|255541662|ref|XP_002511895.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q69ZJ7|RIC1_MOUSE (e_value=9e-34) Protein RIC1 homolog OS=Mus musculus GN=Kiaa1432 PE=2 SV=2;; (*TAIR) AT5G28350.1 (e_value=0.0) | Symbols: | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | chr5:10320301-10326781 FORWARD LENGTH=1127;; (*ITAG) Solyc01g094880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78036956-78052159 transcript_region:SL2.40ch01:78036956..78052159+ functional_description:"Protein RIC1 homolog (AHRD V1 **-- RIC1_MOUSE); contains Interpro domain(s) IPR009771 Protein of unknown function DUF1339 "; NbS00029818g0008.1 protein AED:0.02 eAED:0.02 QI:130|0.5|0.66|1|1|1|3|344|415; (*GB) gi|350539996|ref|NP_001234860.1| (e_value=0.0) mitochondrial succinate dehydrogenase iron sulfur subunit [Solanum lycopersicum];; (*SWP) sp|Q8LB02|DHSB2_ARATH (e_value=2e-159) Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2;; (*TAIR) AT5G40650.1 (e_value=1e-160) | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | chr5:16281462-16283296 FORWARD LENGTH=280;; (*ITAG) Solyc02g093680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49014535-49017784 transcript_region:SL2.40ch02:49014535..49017784+ go_terms:GO:0000104,GO:0008270 functional_description:"Succinate dehydrogenase iron-sulfur protein (AHRD V1 **** C0NQC7_AJECG); contains Interpro domain(s) IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein "; GO:0000104,GO:0008270 NbS00029818g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.62|0.33|1|0.5|0.44|9|0|699; (*GB) gi|225454350|ref|XP_002275993.1| (e_value=0.0) PREDICTED: ferric reduction oxidase 2 [Vitis vinifera];; (*SWP) sp|P92949|FRO2_ARATH (e_value=0.0) Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2;; (*TAIR) AT1G01580.1 (e_value=0.0) | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction oxidase 2 | chr1:209395-212810 FORWARD LENGTH=725;; (*ITAG) Solyc01g094890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78052564-78059855 transcript_region:SL2.40ch01:78052564..78059855- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0000293 NbS00019615g0008.1 protein AED:0.18 eAED:0.18 QI:126|0.85|1|1|0.85|0.75|8|302|462; (*GB) gi|119224824|dbj|BAF41219.1| (e_value=0.0) cytochrome P450 [Solanum lycopersicum];; (*SWP) sp|O64989|C90B1_ARATH (e_value=0.0) Cytochrome P450 90B1 OS=Arabidopsis thaliana GN=CYP90B1 PE=1 SV=2;; (*TAIR) AT3G50660.1 (e_value=0.0) | Symbols: DWF4, CYP90B1, CLM, SNP2, SAV1, PSC1 | Cytochrome P450 superfamily protein | chr3:18814262-18817168 REVERSE LENGTH=513;; (*ITAG) Solyc02g085360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42860844-42865218 transcript_region:SL2.40ch02:42860844..42865218- go_terms:GO:0010012 functional_description:"Cytochrome P450"; GO:0010012 NbS00019615g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|90; (*GB) gi|255579466|ref|XP_002530576.1| (e_value=8e-47) 60S ribosomal protein L51, putative [Ricinus communis];; (*TAIR) AT3G59650.1 (e_value=1e-48) | Symbols: | mitochondrial ribosomal protein L51/S25/CI-B8 family protein | chr3:22033216-22033928 FORWARD LENGTH=119;; (*ITAG) Solyc04g014390.2.1 (e_value=5e-57) genomic_reference:SL2.40ch04 gene_region:4638619-4641880 transcript_region:SL2.40ch04:4638619..4641880+ go_terms:GO:0003735,GO:0005515 functional_description:"Mitochondrial ribosomal protein L43 (AHRD V1 ***- B6T6X8_MAIZE); contains Interpro domain(s) IPR007741 Ribosomal protein/NADH dehydrogenase domain "; GO:0003735,GO:0005515 NbS00019615g0007.1 protein AED:0.52 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|60 NbS00033717g0006.1 protein AED:0.01 eAED:0.01 QI:382|1|0.75|1|0.66|1|4|0|114; (*GB) gi|297737854|emb|CBI27055.3| (e_value=2e-52) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G25540.1 (e_value=1e-46) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE LENGTH=836;; (*ITAG) Solyc12g070100.1.1 (e_value=7e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00033717g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.6|1|0.5|0.8|5|0|450; (*GB) gi|225423909|ref|XP_002278845.1| (e_value=7e-149) PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera];; (*TAIR) AT1G25540.2 (e_value=6e-101) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE LENGTH=727;; (*ITAG) Solyc12g070100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00017390g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|0|0|5|1257|501; (*GB) gi|22128587|gb|AAM52339.1| (e_value=0.0) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-114) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=4e-114) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00013613g0004.1 protein AED:0.04 eAED:0.04 QI:133|0.92|0.93|1|0.85|0.93|15|323|785; (*GB) gi|225433316|ref|XP_002282504.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera];; (*SWP) sp|A3AVH5|RH13_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2;; (*TAIR) AT3G16840.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5738020-5743042 REVERSE LENGTH=826;; (*ITAG) Solyc09g090740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65522093-65531328 transcript_region:SL2.40ch09:65522093..65531328- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** Q7Z4X3_HUMAN); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00000332g0004.1 protein AED:0.10 eAED:0.10 QI:222|0.75|1|1|0.75|1|5|400|372; (*GB) gi|356568951|ref|XP_003552671.1| (e_value=0.0) PREDICTED: metal tolerance protein 5-like [Glycine max];; (*SWP) sp|Q5NA18|MTP5_ORYSJ (e_value=0.0) Metal tolerance protein 5 OS=Oryza sativa subsp. japonica GN=MTP5 PE=2 SV=1;; (*TAIR) AT2G39450.1 (e_value=0.0) | Symbols: MTP11, ATMTP11 | Cation efflux family protein | chr2:16471744-16473735 REVERSE LENGTH=394;; (*ITAG) Solyc05g054730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63730878-63736288 transcript_region:SL2.40ch05:63730878..63736288+ go_terms:GO:0010486,GO:0005384 functional_description:"Cation diffusion facilitator 10 (AHRD V1 **-- Q84ND4_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0010486,GO:0005384 NbS00000332g0114.1 protein AED:0.09 eAED:0.09 QI:208|1|0.5|1|1|1|2|0|392 NbS00000332g0115.1 protein AED:0.10 eAED:0.10 QI:104|1|1|1|0.5|0.66|3|347|154 NbS00000332g0111.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|664 NbS00000332g0102.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.66|1|1|3|0|182 NbS00000332g0116.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0|2|0|67 NbS00020456g0005.1 protein AED:0.35 eAED:0.77 QI:0|0|0|1|0|0.5|2|0|316; (*GB) gi|22128587|gb|AAM52339.1| (e_value=4e-134) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=8e-67) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=6e-68) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00020456g0007.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|373; (*GB) gi|22128589|gb|AAM52340.1| (e_value=2e-173) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=8e-84) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=9e-84) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00020456g0006.1 protein AED:0.47 eAED:0.49 QI:0|0|0|1|0|0|3|0|92; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-15) fertility restorer [Petunia x hybrida];; (*ITAG) Solyc06g007810.1.1 (e_value=7e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1745327-1746133 transcript_region:SL2.40ch06:1745327..1746133- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbC26216471g0004.1 protein AED:0.44 eAED:0.72 QI:0|0|0|1|1|1|2|0|217; (*GB) gi|147797617|emb|CAN65004.1| (e_value=2e-78) hypothetical protein VITISV_023490 [Vitis vinifera];; (*SWP) sp|Q72DK5|Y924_DESVH (e_value=4e-19) Uncharacterized RNA methyltransferase DVU_0924 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=DVU_0924 PE=3 SV=1;; (*TAIR) AT3G21300.1 (e_value=2e-76) | Symbols: | RNA methyltransferase family protein | chr3:7493654-7496257 REVERSE LENGTH=554;; (*ITAG) Solyc03g121260.2.1 (e_value=2e-115) genomic_reference:SL2.40ch03 gene_region:63474444-63480723 transcript_region:SL2.40ch03:63474444..63480723- go_terms:GO:0008649,GO:0008175 functional_description:"23S rRNA (Uracil-5-)-methyltransferase RumA (AHRD V1 **** D8F5E6_9DELT); contains Interpro domain(s) IPR001566 23S rRNA methyltransferase/RumA "; GO:0008649,GO:0008175 NbS00000167g0106.1 protein AED:0.16 eAED:0.43 QI:30|0.5|0.33|0.66|1|1|3|0|189 NbS00000167g0101.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|80 NbS00014039g0004.1 protein AED:0.15 eAED:0.16 QI:0|0.92|0.92|1|0.92|0.92|14|0|607; (*GB) gi|147766588|emb|CAN69523.1| (e_value=0.0) hypothetical protein VITISV_040873 [Vitis vinifera];; (*SWP) sp|P40234|CKI2_SCHPO (e_value=9e-60) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2;; (*TAIR) AT3G13670.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr3:4469434-4473234 FORWARD LENGTH=703;; (*ITAG) Solyc01g006120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:776048-784378 transcript_region:SL2.40ch01:776048..784378+ go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9LID3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020609g0003.1 protein AED:0.11 eAED:0.11 QI:158|1|1|1|1|1|2|284|383; (*GB) gi|350535390|ref|NP_001234448.1| (e_value=0.0) CONSTANS-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FHH8|COL5_ARATH (e_value=9e-97) Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2;; (*TAIR) AT5G57660.1 (e_value=7e-98) | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355573-23356729 FORWARD LENGTH=355;; (*ITAG) Solyc07g006630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1494827-1496702 transcript_region:SL2.40ch07:1494827..1496702- go_terms:GO:0003700 functional_description:"CONSTANS-like protein (AHRD V1 ***- B2MW87_SOLLC); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00007407g0115.1 protein AED:0.14 eAED:0.14 QI:0|0.91|0.88|1|0.87|0.92|25|301|1800 NbS00007407g0110.1 protein AED:0.07 eAED:0.08 QI:0|1|0.85|1|1|1|7|0|173 NbS00007407g0111.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|76 NbS00001028g0006.1 protein AED:0.72 eAED:0.77 QI:0|0|0|1|0|0.33|3|0|277; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-25) hypothetical protein [Nicotiana tabacum]; NbS00012914g0017.1 protein AED:0.10 eAED:0.11 QI:0|0.83|0.76|1|0.83|0.84|13|964|1179; (*GB) gi|56547717|gb|AAV92930.1| (e_value=0.0) putative transcription regulator CPL1 [Solanum lycopersicum];; (*SWP) sp|Q8LL04|CPL3_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2;; (*TAIR) AT2G33540.1 (e_value=0.0) | Symbols: CPL3, ATCPL3 | C-terminal domain phosphatase-like 3 | chr2:14204081-14208797 REVERSE LENGTH=1241;; (*ITAG) Solyc12g063050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54319603-54324915 transcript_region:SL2.40ch12:54319603..54324915+ go_terms:GO:0005634,GO:0005737,GO:0005622 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 3 (AHRD V1 ***- CPL3_ARATH); contains Interpro domain(s) IPR011947 FCP1-like phosphatase, phosphatase domain "; GO:0005634,GO:0005737,GO:0005622 NbS00012914g0016.1 protein AED:0.21 eAED:0.22 QI:104|0.62|0.77|1|0.75|0.77|9|424|485; (*GB) gi|225454801|ref|XP_002274201.1| (e_value=3e-167) PREDICTED: protein SMG9 [Vitis vinifera];; (*SWP) sp|Q5PQS6|SMG9_RAT (e_value=4e-24) Protein SMG9 OS=Rattus norvegicus GN=Smg9 PE=2 SV=1;; (*ITAG) Solyc02g094260.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:49423295-49424509 transcript_region:SL2.40ch02:49423295..49424509+ functional_description:"Protein SMG9 (AHRD V1 ***- SMG9_RAT)"; NbS00032681g0001.1 protein AED:0.03 eAED:0.03 QI:213|1|0.75|1|0.66|0.5|4|0|312; (*GB) gi|225427441|ref|XP_002267479.1| (e_value=3e-123) PREDICTED: protein BREVIS RADIX [Vitis vinifera];; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=8e-100) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=6e-101) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc12g096110.1.1 (e_value=4e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63509764-63511639 transcript_region:SL2.40ch12:63509764..63511639+ functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; NbS00032681g0009.1 protein AED:0.04 eAED:0.04 QI:146|1|1|1|1|1|4|343|99; (*GB) gi|224063132|ref|XP_002301006.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CA23|UFM1_ARATH (e_value=2e-52) Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1;; (*TAIR) AT1G77710.1 (e_value=1e-53) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206750-29207895 FORWARD LENGTH=93;; (*ITAG) Solyc08g075780.2.1 (e_value=3e-56) genomic_reference:SL2.40ch08 gene_region:57060353-57063186 transcript_region:SL2.40ch08:57060353..57063186+ go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier 1 (AHRD V1 ***- B6SXA8_MAIZE); contains Interpro domain(s) IPR005375 Ubiquitin-like, Ufm1 "; GO:0005515 NbS00037773g0001.1 protein AED:0.25 eAED:0.27 QI:186|0.71|0.75|1|1|1|8|0|253; (*GB) gi|224078754|ref|XP_002305615.1| (e_value=1e-127) predicted protein [Populus trichocarpa];; (*SWP) sp|Q58E03|DJC25_XENLA (e_value=1e-37) DnaJ homolog subfamily C member 25 OS=Xenopus laevis GN=dnajc25 PE=2 SV=1;; (*TAIR) AT1G61770.1 (e_value=1e-105) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:22810220-22812370 FORWARD LENGTH=300;; (*ITAG) Solyc02g080130.2.1 (e_value=8e-155) genomic_reference:SL2.40ch02 gene_region:39017199-39021733 transcript_region:SL2.40ch02:39017199..39021733+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone dnaj-like protein (AHRD V1 ***- B7FX28_PHATR); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00037773g0006.1 protein AED:0.49 eAED:0.50 QI:0|0.66|0.25|1|0.33|0.5|4|0|102; (*GB) gi|224076353|ref|XP_002304930.1| (e_value=1e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q792Q4|CRIPT_RAT (e_value=7e-31) Cysteine-rich PDZ-binding protein OS=Rattus norvegicus GN=Cript PE=1 SV=1;; (*TAIR) AT1G61780.1 (e_value=3e-46) | Symbols: | postsynaptic protein-related | chr1:22812822-22814016 REVERSE LENGTH=98;; (*ITAG) Solyc02g080140.2.1 (e_value=2e-51) genomic_reference:SL2.40ch02 gene_region:39022520-39025434 transcript_region:SL2.40ch02:39022520..39025434- go_terms:GO:0019904 functional_description:"Cysteine-rich PDZ-binding protein (AHRD V1 **** C3KI27_ANOFI); contains Interpro domain(s) IPR019367 Microtubule-associated protein CRIPT "; GO:0019904 NbS00020105g0003.1 protein AED:0.22 eAED:0.22 QI:258|1|1|1|1|1|5|350|369; (*GB) gi|225454113|ref|XP_002269224.1| (e_value=8e-180) PREDICTED: bifunctional protein FolD [Vitis vinifera];; (*SWP) sp|A1BF67|FOLD_CHLPD (e_value=6e-95) Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2;; (*TAIR) AT4G00620.1 (e_value=0.0) | Symbols: | Amino acid dehydrogenase family protein | chr4:259265-260788 REVERSE LENGTH=360;; (*ITAG) Solyc01g094280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77576917-77580139 transcript_region:SL2.40ch01:77576917..77580139- go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00015742g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.9|0.90|1|1|1|21|412|1164; (*GB) gi|224075980|ref|XP_002304857.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=1e-168) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00026621g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.96|0.96|1|0.87|0.93|32|191|1535; (*GB) gi|224085364|ref|XP_002307554.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SHJ3|CALS7_ARATH (e_value=0.0) Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=3;; (*TAIR) AT1G06490.1 (e_value=0.0) | Symbols: ATGSL07, gsl07, atgsl7, GSL7 | glucan synthase-like 7 | chr1:1978762-1989295 FORWARD LENGTH=1958;; (*ITAG) Solyc07g056260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00026621g0009.1 protein AED:0.10 eAED:0.10 QI:388|0|0.33|0.66|1|1|3|0|396; (*GB) gi|302143536|emb|CBI22097.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=4e-34) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT5G50890.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc07g056250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61407932-61409930 transcript_region:SL2.40ch07:61407932..61409930+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00028963g0004.1 protein AED:0.27 eAED:0.27 QI:422|0.76|0.85|1|0.69|0.71|14|323|558; (*GB) gi|255553695|ref|XP_002517888.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|P36096|TUL1_YEAST (e_value=1e-18) Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUL1 PE=1 SV=1;; (*TAIR) AT4G28370.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:14035016-14039122 FORWARD LENGTH=562;; (*ITAG) Solyc12g005470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:277571-285208 transcript_region:SL2.40ch12:277571..285208+ go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *-*- B9PQV1_TOXGO); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00035682g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.61|0.35|0.92|0.69|0.78|14|0|1816; (*GB) gi|255538608|ref|XP_002510369.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G42950.1 (e_value=0.0) | Symbols: | GYF domain-containing protein | chr5:17224436-17231044 FORWARD LENGTH=1714;; (*ITAG) Solyc04g080240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62073311-62083188 transcript_region:SL2.40ch04:62073311..62083188- functional_description:"PERQ amino acid-rich with GYF domain-containing protein 2 (AHRD V1 *-*- PERQ2_MOUSE); contains Interpro domain(s) IPR003169 GYF "; NbS00049766g0004.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|253; (*GB) gi|224144348|ref|XP_002336132.1| (e_value=5e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=4e-36) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G68470.1 (e_value=5e-42) | Symbols: | Exostosin family protein | chr1:25676545-25678267 REVERSE LENGTH=455;; (*ITAG) Solyc02g014140.1.1 (e_value=1e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:6489569-6490966 transcript_region:SL2.40ch02:6489569..6490966+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00049766g0015.1 protein AED:0.31 eAED:0.34 QI:43|0.36|0.58|1|0.63|0.75|12|626|648; (*GB) gi|242097170|ref|XP_002439075.1| (e_value=1e-107) hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor];; (*SWP) sp|O82660|P2SAF_ARATH (e_value=2e-104) Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1;; (*TAIR) AT5G23120.1 (e_value=2e-105) | Symbols: HCF136 | photosystem II stability/assembly factor, chloroplast (HCF136) | chr5:7778154-7780463 FORWARD LENGTH=403;; (*ITAG) Solyc02g014150.2.1 (e_value=2e-114) genomic_reference:SL2.40ch02 gene_region:6519093-6531932 transcript_region:SL2.40ch02:6519093..6531932+ go_terms:GO:0005515 functional_description:"Photosystem II stability/assembly factor Ycf48-like protein (AHRD V1 **-- B0C6T3_ACAM1); contains Interpro domain(s) IPR016705 Photosystem II stability/assembly factor, HCF136 "; GO:0005515 NbS00036318g0003.1 protein AED:0.02 eAED:0.02 QI:265|1|1|1|0.5|0.33|3|245|466; (*GB) gi|224093908|ref|XP_002334812.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q06915|EA6_ARATH (e_value=2e-180) Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1;; (*TAIR) AT3G07320.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:2332324-2333925 REVERSE LENGTH=460;; (*ITAG) Solyc09g057630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45559736-45561598 transcript_region:SL2.40ch09:45559736..45561598- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00006370g0007.1 protein AED:0.14 eAED:0.15 QI:0|0.81|0.64|0.96|0.85|0.82|28|0|2591; (*GB) gi|359489037|ref|XP_002275536.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245550 [Vitis vinifera];; (*SWP) sp|Q54LN2|VP13D_DICDI (e_value=6e-12) Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1;; (*TAIR) AT5G24740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36829423-36874249 transcript_region:SL2.40ch11:36829423..36874249+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 *-*- C0NJR3_AJECG)"; NbS00032572g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|351721764|ref|NP_001238500.1| (e_value=5e-57) dehydration-responsive element binding protein 3 [Glycine max];; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=5e-45) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1;; (*TAIR) AT1G19210.1 (e_value=4e-46) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:6626973-6627530 REVERSE LENGTH=185;; (*ITAG) Solyc12g009240.1.1 (e_value=1e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2519864-2520610 transcript_region:SL2.40ch12:2519864..2520610- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00002205g0001.1 protein AED:0.63 eAED:0.63 QI:0|0|0.33|0.33|1|1|3|0|112; (*GB) gi|13518480|ref|NP_084839.1| (e_value=9e-14) Ycf2 [Lotus japonicus];; (*SWP) sp|Q9B1K6|YCF2_LOTJA (e_value=3e-15) Protein ycf2 OS=Lotus japonicus GN=ycf2-A PE=3 SV=1;; (*ITAG) Solyc12g070220.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:55254932-55255567 transcript_region:SL2.40ch12:55254932..55255567+ go_terms:GO:0005524 functional_description:"Ycf2 (AHRD V1 *-*- D2KLP5_OLEEU)"; GO:0005524 NbS00019786g0003.1 protein AED:0.18 eAED:0.18 QI:6|0.62|0.55|0.77|0.5|0.44|9|234|335; (*GB) gi|298205216|emb|CBI17275.3| (e_value=1e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=5e-72) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT3G23870.1 (e_value=5e-122) | Symbols: | Protein of unknown function (DUF803) | chr3:8620253-8621755 FORWARD LENGTH=335;; (*ITAG) Solyc12g098450.1.1 (e_value=3e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64286848-64290731 transcript_region:SL2.40ch12:64286848..64290731- functional_description:"DUF803 domain membrane protein (AHRD V1 **-- Q4WRL6_ASPFU); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00049133g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|297741794|emb|CBI33099.3| (e_value=6e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q41916|CYT5_ARATH (e_value=7e-35) Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2;; (*TAIR) AT5G47550.1 (e_value=6e-36) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc04g014790.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5030604-5031014 transcript_region:SL2.40ch04:5030604..5031014+ go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q30KW6_ZEAMP); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869 NbS00009231g0015.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.6|0.5|0.8|5|0|1284; (*GB) gi|359474788|ref|XP_002280049.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Vitis vinifera];; (*SWP) sp|Q8H0U8|RH42_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2;; (*TAIR) AT1G20920.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:7285342-7288842 FORWARD LENGTH=1166;; (*ITAG) Solyc12g098700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64460870-64464313 transcript_region:SL2.40ch12:64460870..64464313+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00009231g0013.1 protein AED:0.15 eAED:0.16 QI:187|0.5|0.6|1|0.75|0.6|5|0|383; (*GB) gi|357462929|ref|XP_003601746.1| (e_value=7e-173) hypothetical protein MTR_3g084950 [Medicago truncatula];; (*SWP) sp|Q9SAC0|ZCIS_ARATH (e_value=1e-169) 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1;; (*TAIR) AT1G10830.1 (e_value=8e-171) | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene isomerase | chr1:3605736-3607449 REVERSE LENGTH=367;; (*ITAG) Solyc12g098710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64466750-64470757 transcript_region:SL2.40ch12:64466750..64470757+ functional_description:"15-cis-zeta-carotene isomerase"; NbS00009231g0011.1 protein AED:0.27 eAED:0.27 QI:50|0|0.5|1|1|1|2|0|124; (*GB) gi|118481239|gb|ABK92569.1| (e_value=1e-23) unknown [Populus trichocarpa]; NbS00035533g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|1034; (*GB) gi|147803027|emb|CAN66169.1| (e_value=0.0) hypothetical protein VITISV_000145 [Vitis vinifera];; (*TAIR) AT4G29920.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr4:14632653-14635885 REVERSE LENGTH=1017;; (*ITAG) Solyc07g018070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8990175-8994973 transcript_region:SL2.40ch07:8990175..8994973- go_terms:GO:0019538 functional_description:"Heat shock protein-related (Fragment) (AHRD V1 *--- B7ZEI4_ARATH); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00025866g0006.1 protein AED:0.08 eAED:0.08 QI:254|0.82|0.83|1|0.58|0.66|18|885|508; (*GB) gi|255567297|ref|XP_002524629.1| (e_value=0.0) chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis];; (*SWP) sp|P28769|TCPA_ARATH (e_value=0.0) T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1;; (*TAIR) AT3G20050.1 (e_value=0.0) | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha subunit | chr3:6998544-7002266 REVERSE LENGTH=545;; (*ITAG) Solyc01g090750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76162903-76172451 transcript_region:SL2.40ch01:76162903..76172451+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit alpha (AHRD V1 ***- B9SF60_RICCO); contains Interpro domain(s) IPR012715 T-complex protein 1, alpha subunit "; GO:0051082 NbS00019728g0004.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|1|1|2|0|443; (*GB) gi|225441058|ref|XP_002284002.1| (e_value=8e-44) PREDICTED: embryonic protein DC-8-like [Vitis vinifera];; (*SWP) sp|P20075|LEAD8_DAUCA (e_value=8e-32) Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1;; (*TAIR) AT2G36640.1 (e_value=6e-43) | Symbols: ATECP63, ECP63 | embryonic cell protein 63 | chr2:15357019-15358552 REVERSE LENGTH=448;; (*ITAG) Solyc09g008770.2.1 (e_value=1e-85) genomic_reference:SL2.40ch09 gene_region:2194030-2196459 transcript_region:SL2.40ch09:2194030..2196459+ functional_description:"Group 3 late embryogenesis abundant protein (AHRD V1 **-- Q2N1E0_PHAVU); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00010857g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|0.5|0.33|3|0|122; (*GB) gi|71081904|gb|AAZ23261.1| (e_value=2e-64) senescence-associated protein [Nicotiana tabacum];; (*TAIR) AT4G35770.2 (e_value=4e-15) | Symbols: SEN1, ATSEN1, DIN1 | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:16945073-16945840 FORWARD LENGTH=161;; (*ITAG) Solyc02g083280.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:41305686-41308404 transcript_region:SL2.40ch02:41305686..41308404+ go_terms:GO:0004792 functional_description:"Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 1 (AHRD V1 *--* TSTD1_HUMAN); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792 NbS00001515g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|90900942|gb|ABE01833.1| (e_value=1e-80) CK25 [Nicotiana tabacum];; (*ITAG) Solyc07g054560.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60167225-60168091 transcript_region:SL2.40ch07:60167225..60168091+ functional_description:"CK25 (AHRD V1 ***- Q1W1G0_TOBAC)"; NbS00013373g0001.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|2|0|595; (*GB) gi|225424813|ref|XP_002271877.1| (e_value=0.0) PREDICTED: UPF0392 protein RCOM_0530710-like [Vitis vinifera];; (*SWP) sp|B9S2H4|Y232_RICCO (e_value=0.0) UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0699480 PE=3 SV=1;; (*TAIR) AT1G27200.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF23) | chr1:9449812-9451539 REVERSE LENGTH=575;; (*ITAG) Solyc05g006560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1195251-1197053 transcript_region:SL2.40ch05:1195251..1197053+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00006358g0016.1 protein AED:0.31 eAED:0.37 QI:0|0.25|0.2|0.8|0.5|0.6|5|0|204; (*GB) gi|225425414|ref|XP_002277728.1| (e_value=1e-55) PREDICTED: uncharacterized protein LOC100248862 [Vitis vinifera];; (*TAIR) AT1G27385.1 (e_value=1e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:9511129-9512820 REVERSE LENGTH=202;; (*ITAG) Solyc04g045580.2.1 (e_value=2e-69) genomic_reference:SL2.40ch04 gene_region:33219502-33220709 transcript_region:SL2.40ch04:33219502..33220709- functional_description:"Os04g0386500 protein (Fragment) (AHRD V1 ***- Q0JDQ2_ORYSJ); contains Interpro domain(s) IPR007454 Protein of unknown function DUF493 "; NbS00006358g0017.1 protein AED:0.44 eAED:0.82 QI:0|0|0|1|0|0|2|0|122 NbS00042738g0005.1 protein AED:0.30 eAED:0.30 QI:15|1|1|1|0|0|2|352|94; (*GB) gi|225427130|ref|XP_002278490.1| (e_value=1e-43) PREDICTED: uncharacterized protein LOC100245368 isoform 2 [Vitis vinifera];; (*TAIR) AT1G21930.1 (e_value=2e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7713466-7714298 FORWARD LENGTH=98;; (*ITAG) Solyc03g093220.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:47854719-47857689 transcript_region:SL2.40ch03:47854719..47857689- functional_description:"Unknown Protein (AHRD V1)"; NbS00042738g0008.1 protein AED:0.20 eAED:0.21 QI:244|0.87|0.55|1|0.62|0.66|9|0|468; (*GB) gi|302141846|emb|CBI19049.3| (e_value=5e-127) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g093210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47847208-47852705 transcript_region:SL2.40ch03:47847208..47852705+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013669g0012.1 protein AED:0.15 eAED:0.15 QI:73|1|1|1|0.66|0.75|4|320|323; (*GB) gi|365222922|gb|AEW69813.1| (e_value=1e-127) Hop-interacting protein THI113 [Solanum lycopersicum];; (*TAIR) AT2G39050.1 (e_value=4e-68) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317;; (*ITAG) Solyc01g010750.2.1 (e_value=1e-130) genomic_reference:SL2.40ch01 gene_region:5783031-5788195 transcript_region:SL2.40ch01:5783031..5788195- functional_description:"Stress responsive protein (AHRD V1 *--- B6STP1_MAIZE); contains Interpro domain(s) IPR008997 Ricin B-related lectin "; NbS00013669g0011.1 protein AED:0.24 eAED:0.24 QI:478|0.4|0.33|1|0.2|0.16|6|0|376; (*GB) gi|359480504|ref|XP_002262746.2| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100249503 [Vitis vinifera];; (*TAIR) AT4G40020.1 (e_value=2e-13) | Symbols: | Myosin heavy chain-related protein | chr4:18553453-18555300 REVERSE LENGTH=615;; (*ITAG) Solyc07g009520.1.1 (e_value=4e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:4664560-4666330 transcript_region:SL2.40ch07:4664560..4666330+ functional_description:"Myosin-like protein (AHRD V1 *-*- Q8W3G8_ORYSA)"; NbS00021961g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.75|1|1|1|4|0|284; (*GB) gi|678547|gb|AAA65637.1| (e_value=1e-174) peroxidase [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=3e-133) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=2e-134) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052510.2.1 (e_value=3e-179) genomic_reference:SL2.40ch07 gene_region:58343610-58345412 transcript_region:SL2.40ch07:58343610..58345412+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07446_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00037888g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|0|0|2|0|90; (*GB) gi|311705038|gb|ADQ00985.1| (e_value=8e-49) granule-bound starch synthase [Jaltomata bicolor];; (*SWP) sp|Q00775|SSG1_SOLTU (e_value=1e-49) Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1;; (*TAIR) AT1G32900.1 (e_value=1e-39) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:11920582-11923506 REVERSE LENGTH=610;; (*ITAG) Solyc08g083320.2.1 (e_value=5e-51) genomic_reference:SL2.40ch08 gene_region:62981703-62985075 transcript_region:SL2.40ch08:62981703..62985075- go_terms:GO:0004373,GO:0005515 functional_description:"Granule-bound starch synthase (AHRD V1 **** B0ZTE3_SOLTU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00037888g0004.1 protein AED:0.08 eAED:0.08 QI:320|0.92|1|1|0.78|0.8|15|370|381; (*GB) gi|224078896|ref|XP_002305670.1| (e_value=5e-171) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11170.1 (e_value=3e-158) | Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438;; (*ITAG) Solyc10g009170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:3168005-3172774 transcript_region:SL2.40ch10:3168005..3172774+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00022428g0001.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0.33|1|1|1|3|0|613; (*GB) gi|359479485|ref|XP_002272987.2| (e_value=5e-122) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=2e-22) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT3G11590.1 (e_value=6e-69) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc11g068720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50435738-50439395 transcript_region:SL2.40ch11:50435738..50439395+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00022428g0006.1 protein AED:0.39 eAED:0.39 QI:53|1|0.5|1|0|0.5|2|150|95; (*ITAG) Solyc02g043820.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048734g0005.1 protein AED:0.53 eAED:0.53 QI:128|0.5|0.66|0.66|1|1|3|0|69; (*GB) gi|357476845|ref|XP_003608708.1| (e_value=2e-17) 40S ribosomal protein S30 [Medicago truncatula];; (*SWP) sp|P49689|RS30_ARATH (e_value=8e-17) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=6e-18) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=3e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00048734g0006.1 protein AED:0.21 eAED:0.25 QI:42|1|0.5|1|0.66|0.5|4|0|307; (*GB) gi|147840661|emb|CAN61999.1| (e_value=1e-148) hypothetical protein VITISV_007874 [Vitis vinifera];; (*SWP) sp|Q84XG9|ILL1_ORYSI (e_value=2e-134) IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1;; (*TAIR) AT1G51760.1 (e_value=6e-134) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc12g008690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2064426-2068579 transcript_region:SL2.40ch12:2064426..2068579+ go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 11 (AHRD V1 ***- B9GVN2_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0016787,GO:0008152 NbS00020276g0005.1 protein AED:0.03 eAED:0.03 QI:79|1|1|1|1|1|6|430|396; (*GB) gi|255548199|ref|XP_002515156.1| (e_value=1e-137) monoxygenase, putative [Ricinus communis];; (*TAIR) AT4G15760.1 (e_value=6e-123) | Symbols: MO1 | monooxygenase 1 | chr4:8972785-8974548 REVERSE LENGTH=422;; (*ITAG) Solyc04g025650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22160294-22164784 transcript_region:SL2.40ch04:22160294..22164784- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding (AHRD V1 **-- A1TC37_MYCVP); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00019049g0013.1 protein AED:0.24 eAED:0.31 QI:69|0|0|1|0.28|0.5|8|0|509; (*GB) gi|225434498|ref|XP_002278308.1| (e_value=0.0) PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Vitis vinifera];; (*SWP) sp|P69735|RB3GP_RAT (e_value=7e-24) Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2;; (*TAIR) AT5G58510.1 (e_value=6e-144) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23648287-23654421 REVERSE LENGTH=963;; (*ITAG) Solyc06g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44393293-44408442 transcript_region:SL2.40ch06:44393293..44408442+ go_terms:GO:0005097 functional_description:"Rab3 GTPase-activating protein catalytic subunit (AHRD V1 *-** RB3GP_XENLA)"; GO:0005097 NbS00019049g0012.1 protein AED:0.43 eAED:0.43 QI:0|0.12|0|0.22|0.62|0.77|9|0|318; (*GB) gi|225434498|ref|XP_002278308.1| (e_value=3e-139) PREDICTED: rab3 GTPase-activating protein catalytic subunit-like [Vitis vinifera];; (*SWP) sp|Q6NUV0|RB3GP_DANRE (e_value=9e-12) Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2;; (*TAIR) AT5G58510.1 (e_value=5e-118) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23648287-23654421 REVERSE LENGTH=963;; (*ITAG) Solyc06g082200.2.1 (e_value=4e-164) genomic_reference:SL2.40ch06 gene_region:44393293-44408442 transcript_region:SL2.40ch06:44393293..44408442+ go_terms:GO:0005097 functional_description:"Rab3 GTPase-activating protein catalytic subunit (AHRD V1 *-** RB3GP_XENLA)"; GO:0005097 NbS00019869g0003.1 protein AED:0.11 eAED:0.11 QI:25|1|0.8|1|0.75|0.6|5|388|674; (*GB) gi|255582189|ref|XP_002531887.1| (e_value=2e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G02390.1 (e_value=9e-17) | Symbols: | Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835;; (*ITAG) Solyc06g076130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43659893-43662466 transcript_region:SL2.40ch06:43659893..43662466+ go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1)"; GO:0005975 NbS00022836g0012.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|263|265; (*GB) gi|225431978|ref|XP_002278726.1| (e_value=5e-146) PREDICTED: 3-hydroxypropionyl-coenzyme A dehydratase [Vitis vinifera];; (*SWP) sp|A4YI89|HPCD_METS5 (e_value=9e-40) 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1;; (*TAIR) AT4G16210.1 (e_value=6e-135) | Symbols: ECHIA, E-COAH-2 | enoyl-CoA hydratase/isomerase A | chr4:9176864-9177978 REVERSE LENGTH=265;; (*ITAG) Solyc01g059830.2.1 (e_value=5e-160) genomic_reference:SL2.40ch01 gene_region:61474622-61478520 transcript_region:SL2.40ch01:61474622..61478520- go_terms:GO:0008152 functional_description:"Enoyl-CoA hydratase (AHRD V1 ***- C1K4P1_ELAOL); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00022836g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.91|0.76|0.92|0.83|0.84|13|0|740; (*GB) gi|224101557|ref|XP_002312329.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-106) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=0.0) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc01g059860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61725129-61733391 transcript_region:SL2.40ch01:61725129..61733391- go_terms:GO:0000160,GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7L5X4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0006355,GO:0007165 NbS00022836g0014.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.33|1|0.66|3|0|122 NbS00027385g0006.1 protein AED:0.11 eAED:0.11 QI:134|1|1|1|0.85|1|8|191|285; (*GB) gi|225441724|ref|XP_002283060.1| (e_value=5e-132) PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera];; (*SWP) sp|Q9FL54|DNAJ6_ARATH (e_value=2e-116) Chaperone protein dnaJ 6 OS=Arabidopsis thaliana GN=ATJ6 PE=1 SV=1;; (*TAIR) AT3G12170.1 (e_value=6e-119) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:3881021-3882655 FORWARD LENGTH=262;; (*ITAG) Solyc10g079090.1.1 (e_value=5e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60035807-60039291 transcript_region:SL2.40ch10:60035807..60039291+ go_terms:GO:0030544 functional_description:"Chaperone protein dnaJ 6 (AHRD V1 ***- B6TT74_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544 NbS00015254g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.71|0.62|1|0.71|0.62|8|302|496; (*GB) gi|255578868|ref|XP_002530288.1| (e_value=3e-166) protein binding protein, putative [Ricinus communis];; (*TAIR) AT5G60580.3 (e_value=3e-142) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc11g069350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51043076-51046935 transcript_region:SL2.40ch11:51043076..51046935+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 **-- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00024292g0004.1 protein AED:0.35 eAED:0.35 QI:232|0.8|0.66|1|0.8|0.66|6|0|139; (*GB) gi|351724865|ref|NP_001237840.1| (e_value=1e-41) uncharacterized protein LOC100305863 [Glycine max];; (*SWP) sp|Q9LQU5|NUD18_ARATH (e_value=3e-40) Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1;; (*TAIR) AT1G14860.1 (e_value=2e-41) | Symbols: atnudt18, NUDT18 | nudix hydrolase homolog 18 | chr1:5124993-5125805 FORWARD LENGTH=176;; (*ITAG) Solyc04g014500.2.1 (e_value=2e-73) genomic_reference:SL2.40ch04 gene_region:4729086-4732903 transcript_region:SL2.40ch04:4729086..4732903- go_terms:GO:0008486,GO:0034432 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase (AHRD V1 *--* B0WVR6_CULQU); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486,GO:0034432 NbS00051418g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.2|0.8|0|0|5|0|187; (*GB) gi|147765658|emb|CAN78103.1| (e_value=1e-61) hypothetical protein VITISV_043511 [Vitis vinifera];; (*SWP) sp|Q9FNP2|GDL75_ARATH (e_value=8e-51) GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1;; (*TAIR) AT5G08460.1 (e_value=6e-52) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:2733220-2735351 FORWARD LENGTH=385;; (*ITAG) Solyc11g043110.1.1 (e_value=3e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34833475-34835605 transcript_region:SL2.40ch11:34833475..34835605+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00051418g0008.1 protein AED:0.23 eAED:0.23 QI:425|1|1|1|0.90|0.83|12|448|387; (*GB) gi|356534633|ref|XP_003535857.1| (e_value=0.0) PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Glycine max];; (*SWP) sp|Q8LG50|LPAT2_ARATH (e_value=0.0) 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=2;; (*TAIR) AT3G57650.1 (e_value=0.0) | Symbols: LPAT2 | lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389;; (*ITAG) Solyc03g063880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:33993036-34010693 transcript_region:SL2.40ch03:33993036..34010693- go_terms:GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** Q2Z1Y8_PRUMU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00051418g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.75|0.66|1|0.75|0.66|9|319|619; (*GB) gi|359475699|ref|XP_003631734.1| (e_value=0.0) PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Vitis vinifera];; (*SWP) sp|Q9SWG3|FAR1_ARATH (e_value=3e-165) Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1;; (*TAIR) AT4G15090.1 (e_value=2e-166) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827;; (*ITAG) Solyc08g060840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:42815391-42818544 transcript_region:SL2.40ch08:42815391..42818544- go_terms:GO:0016563,GO:0003700 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0016563,GO:0003700 NbS00051418g0011.1 protein AED:0.06 eAED:0.52 QI:0|0|0|1|0|0|2|0|168; (*GB) gi|47825035|gb|AAT38805.1| (e_value=1e-14) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc08g076760.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57862741-57863049 transcript_region:SL2.40ch08:57862741..57863049+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00031303g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|0|533; (*GB) gi|350536567|ref|NP_001234253.1| (e_value=0.0) ammonium transporter 1 member 2 [Solanum lycopersicum];; (*SWP) sp|O04161|AMT12_SOLLC (e_value=0.0) Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1;; (*TAIR) AT1G64780.1 (e_value=0.0) | Symbols: ATAMT1;2, AMT1;2 | ammonium transporter 1;2 | chr1:24061021-24062565 REVERSE LENGTH=514;; (*ITAG) Solyc04g050440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46379169-46382142 transcript_region:SL2.40ch04:46379169..46382142- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9IPE2_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00013715g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|255587017|ref|XP_002534100.1| (e_value=3e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G46550.2 (e_value=8e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3). | chr2:19112264-19113037 REVERSE LENGTH=257;; (*ITAG) Solyc11g010320.1.1 (e_value=3e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3400639-3401196 transcript_region:SL2.40ch11:3400639..3401196- functional_description:"AT2G46550 protein (Fragment) (AHRD V1 ***- B9DHY8_ARATH)"; NbS00013715g0012.1 protein AED:0.09 eAED:0.10 QI:0|0.2|0|1|0.6|0.33|6|0|1761; (*GB) gi|356569232|ref|XP_003552808.1| (e_value=0.0) PREDICTED: putative uncharacterized protein At4g01020, chloroplastic-like [Glycine max];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=0.0) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT4G01020.1 (e_value=0.0) | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr4:439086-445043 FORWARD LENGTH=1787;; (*ITAG) Solyc11g010310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3393422-3400263 transcript_region:SL2.40ch11:3393422..3400263+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 NbS00013715g0011.1 protein AED:0.14 eAED:0.14 QI:260|1|1|1|1|1|7|341|547; (*GB) gi|225465770|ref|XP_002267374.1| (e_value=0.0) PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P47924|RIBBA_ARATH (e_value=0.0) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G64300.1 (e_value=0.0) | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydrolase II | chr5:25718459-25720790 FORWARD LENGTH=543;; (*ITAG) Solyc11g010300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3380696-3387891 transcript_region:SL2.40ch11:3380696..3387891+ go_terms:GO:0009231 functional_description:"3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 ***- D1VQB4_9ACTO); contains Interpro domain(s) IPR000422 DHBP synthase RibB "; GO:0009231 NbS00013715g0009.1 protein AED:0.52 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|159; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=3e-29) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=2e-24) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*ITAG) Solyc08g062450.1.1 (e_value=6e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00030118g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|89; (*GB) gi|222624194|gb|EEE58326.1| (e_value=8e-24) hypothetical protein OsJ_09420 [Oryza sativa Japonica Group];; (*TAIR) AT4G14420.1 (e_value=6e-20) | Symbols: | HR-like lesion-inducing protein-related | chr4:8302171-8303738 REVERSE LENGTH=158;; (*ITAG) Solyc03g005470.2.1 (e_value=1e-25) genomic_reference:SL2.40ch03 gene_region:366040-369863 transcript_region:SL2.40ch03:366040..369863+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6T757_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00030118g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.75|1|1|1|8|0|606; (*GB) gi|359493172|ref|XP_003634532.1| (e_value=1e-166) PREDICTED: uncharacterized protein LOC100252053 [Vitis vinifera];; (*SWP) sp|Q3B7T1|EDRF1_HUMAN (e_value=4e-29) Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1 PE=1 SV=1;; (*TAIR) AT1G35660.1 (e_value=3e-139) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197655 FORWARD LENGTH=1405;; (*ITAG) Solyc06g065350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37157225-37169563 transcript_region:SL2.40ch06:37157225..37169563+ functional_description:"Erythroid differentiation-related factor 1-like protein (AHRD V1 ***- Q5N730_ORYSJ)"; NbS00030118g0010.1 protein AED:0.46 eAED:0.46 QI:0|1|0|1|1|0.5|2|0|99; (*GB) gi|255571740|ref|XP_002526813.1| (e_value=1e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G35660.1 (e_value=1e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197655 FORWARD LENGTH=1405;; (*ITAG) Solyc06g065360.2.1 (e_value=3e-41) genomic_reference:SL2.40ch06 gene_region:37177694-37184339 transcript_region:SL2.40ch06:37177694..37184339+ functional_description:"Erythroid differentiation-related factor 1-like protein (AHRD V1 ***- Q5N730_ORYSJ)"; NbS00030118g0011.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0|0|3|0|806; (*GB) gi|359493172|ref|XP_003634532.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252053 [Vitis vinifera];; (*TAIR) AT1G35660.1 (e_value=2e-172) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197655 FORWARD LENGTH=1405;; (*ITAG) Solyc06g065360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37177694-37184339 transcript_region:SL2.40ch06:37177694..37184339+ functional_description:"Erythroid differentiation-related factor 1-like protein (AHRD V1 ***- Q5N730_ORYSJ)"; NbS00051619g0001.1 protein AED:0.30 eAED:0.36 QI:17|0|0|1|0|0|2|0|62; (*GB) gi|225240|prf||1211235BY (e_value=7e-20) ORF 581;; (*SWP) sp|P61242|YCF2_SOLLC (e_value=3e-21) Protein ycf2 OS=Solanum lycopersicum GN=ycf2-A PE=2 SV=2;; (*ITAG) ATCG01280.1 (e_value=2e-18) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g017060.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23869096-23869832 transcript_region:SL2.40ch01:23869096..23869832- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00004635g0004.1 protein AED:0.02 eAED:0.02 QI:22|1|0.66|1|0.5|0.66|3|0|122; (*GB) gi|255538092|ref|XP_002510111.1| (e_value=2e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g088410.1.1 (e_value=1e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62242882-62244590 transcript_region:SL2.40ch12:62242882..62244590- go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00029821g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|5|199 NbS00041578g0001.1 protein AED:0.27 eAED:0.28 QI:216|0.87|0.77|1|0.87|0.77|9|0|354; (*GB) gi|118486455|gb|ABK95067.1| (e_value=7e-169) unknown [Populus trichocarpa];; (*TAIR) AT1G19600.1 (e_value=1e-148) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:6779085-6780898 FORWARD LENGTH=355;; (*ITAG) Solyc04g080580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62290777-62294618 transcript_region:SL2.40ch04:62290777..62294618+ go_terms:GO:0016301 functional_description:"Kinase PfkB family (AHRD V1 **** D4WID3_BACOV); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00041578g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|301; (*GB) gi|22947842|gb|AAN07899.1| (e_value=1e-168) 20S proteasome alpha 6 subunit [Nicotiana benthamiana];; (*SWP) sp|P34066|PSA1A_ARATH (e_value=1e-145) Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3;; (*TAIR) AT5G42790.1 (e_value=7e-147) | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha subunit F1 | chr5:17159270-17160975 REVERSE LENGTH=278;; (*ITAG) Solyc04g080590.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:62295025-62299348 transcript_region:SL2.40ch04:62295025..62299348- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q8H1Y2_NICBE); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00041578g0008.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|149; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-16) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc01g034120.2.1 (e_value=5e-24) genomic_reference:SL2.40ch01 gene_region:36447112-36448420 transcript_region:SL2.40ch01:36447112..36448420+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00056452g0008.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|3|0|237; (*GB) gi|255552774|ref|XP_002517430.1| (e_value=3e-115) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|O04567|Y1719_ARATH (e_value=2e-98) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT3G28450.1 (e_value=4e-100) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605;; (*ITAG) Solyc02g067560.1.1 (e_value=1e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32286721-32288532 transcript_region:SL2.40ch02:32286721..32288532- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00056452g0009.1 protein AED:0.43 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|113; (*GB) gi|359488761|ref|XP_003633815.1| (e_value=4e-13) PREDICTED: probable inactive receptor kinase At1g27190-like [Vitis vinifera];; (*TAIR) AT3G28450.1 (e_value=7e-13) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605;; (*ITAG) Solyc02g067560.1.1 (e_value=3e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32286721-32288532 transcript_region:SL2.40ch02:32286721..32288532- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00056452g0007.1 protein AED:0.33 eAED:0.33 QI:255|1|0.88|1|1|1|9|0|337; (*GB) gi|225452620|ref|XP_002281501.1| (e_value=9e-158) PREDICTED: putative rRNA methyltransferase ylbH [Vitis vinifera];; (*TAIR) AT3G28460.1 (e_value=4e-132) | Symbols: | methyltransferases | chr3:10672673-10674297 REVERSE LENGTH=314;; (*ITAG) Solyc02g067540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32280032-32283838 transcript_region:SL2.40ch02:32280032..32283838+ functional_description:"Methyltransferase (AHRD V1 *-*- B9LJG4_CHLSY); contains Interpro domain(s) IPR016065 Protein of unknown function methylase putative "; NbS00056452g0010.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|2|0|133; (*GB) gi|224055521|ref|XP_002298520.1| (e_value=3e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|O04567|Y1719_ARATH (e_value=1e-28) Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1;; (*TAIR) AT3G28450.1 (e_value=7e-36) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:10667359-10669176 FORWARD LENGTH=605;; (*ITAG) Solyc02g067560.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32286721-32288532 transcript_region:SL2.40ch02:32286721..32288532- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00053991g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|268; (*GB) gi|296088355|emb|CBI36800.3| (e_value=2e-126) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ32|FB60_ARATH (e_value=1e-99) F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1 SV=1;; (*TAIR) AT1G55000.3 (e_value=8e-101) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr1:20514762-20516166 FORWARD LENGTH=221;; (*ITAG) Solyc01g099130.2.1 (e_value=2e-173) genomic_reference:SL2.40ch01 gene_region:81207115-81209977 transcript_region:SL2.40ch01:81207115..81209977+ go_terms:GO:0016998 functional_description:"LysM domain containing protein (AHRD V1 ***- B6TTS5_MAIZE); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00053991g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|0.83|0.85|7|362|416; (*GB) gi|225432616|ref|XP_002281783.1| (e_value=0.0) PREDICTED: vacuole membrane protein 1 [Vitis vinifera];; (*SWP) sp|Q9XWU8|VMP1_CAEEL (e_value=3e-66) Ectopic P granules protein 3 OS=Caenorhabditis elegans GN=epg-3 PE=2 SV=2;; (*TAIR) AT4G14950.1 (e_value=4e-180) | Symbols: | SNARE associated Golgi protein family | chr4:8545517-8547722 FORWARD LENGTH=416;; (*ITAG) Solyc01g099140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81210418-81217602 transcript_region:SL2.40ch01:81210418..81217602- functional_description:"Transmembrane protein 49 (AHRD V1 ***- B6TDW5_MAIZE)"; NbS00017378g0004.1 protein AED:0.10 eAED:0.10 QI:33|0|0|0.66|0|0.33|3|0|682; (*GB) gi|225424995|ref|XP_002267025.1| (e_value=0.0) PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=0.0) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G03890.1 (e_value=0.0) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650;; (*ITAG) Solyc05g010810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4987801-4989723 transcript_region:SL2.40ch05:4987801..4989723- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00039440g0009.1 protein AED:0.31 eAED:0.32 QI:787|0.57|0.5|0.87|1|1|8|0|285; (*GB) gi|255569351|ref|XP_002525643.1| (e_value=1e-43) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G58720.1 (e_value=5e-18) | Symbols: | smr (Small MutS Related) domain-containing protein | chr5:23719976-23722974 REVERSE LENGTH=519;; (*ITAG) Solyc06g007110.2.1 (e_value=1e-108) genomic_reference:SL2.40ch06 gene_region:1157531-1164321 transcript_region:SL2.40ch06:1157531..1164321+ go_terms:GO:0005524,GO:0003684 functional_description:"Smr domain protein (AHRD V1 *--- B0XRA1_ASPFC); contains Interpro domain(s) IPR013899 Region of unknown function DUF1771 "; GO:0005524,GO:0003684 NbS00039440g0001.1 protein AED:0.17 eAED:0.18 QI:43|1|0.9|1|0.66|0.6|10|0|429; (*GB) gi|255569343|ref|XP_002525639.1| (e_value=0.0) Vacuolar cation/proton exchanger 1a, putative [Ricinus communis];; (*SWP) sp|Q93Z81|CAX3_ARATH (e_value=1e-161) Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1;; (*TAIR) AT3G51860.1 (e_value=8e-163) | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation exchanger 3 | chr3:19239458-19242519 FORWARD LENGTH=459;; (*ITAG) Solyc06g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1143219-1150108 transcript_region:SL2.40ch06:1143219..1150108+ go_terms:GO:0015369 functional_description:"Calcium/proton exchanger (AHRD V1 **** O59940_NEUCR); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0015369 NbS00000453g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.62|1|0.71|0.62|8|0|860; (*GB) gi|224117334|ref|XP_002317544.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc12g005290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:177180-180465 transcript_region:SL2.40ch12:177180..180465- go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- P93068_BRAOL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00014785g0007.1 protein AED:0.56 eAED:0.78 QI:6|0|0|1|0|0.5|2|0|37 NbS00014785g0004.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.5|1|1|4|0|106 NbS00041029g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|208; (*GB) gi|224134374|ref|XP_002327822.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|O23208|ATB40_ARATH (e_value=2e-64) Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3;; (*TAIR) AT4G36740.1 (e_value=1e-65) | Symbols: HB-5, ATHB40, HB40 | homeobox protein 40 | chr4:17314649-17316314 REVERSE LENGTH=216;; (*ITAG) Solyc02g085630.2.1 (e_value=2e-97) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00023277g0001.1 protein AED:0.17 eAED:0.17 QI:296|0.78|0.70|1|0.95|0.91|24|69|1063; (*GB) gi|255551667|ref|XP_002516879.1| (e_value=0.0) helicase, putative [Ricinus communis];; (*SWP) sp|Q8RWY3|ISW2_ARATH (e_value=0.0) Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3;; (*TAIR) AT3G06400.2 (e_value=0.0) | Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1056;; (*ITAG) Solyc06g054560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33791637-33800988 transcript_region:SL2.40ch06:33791637..33800988+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00018368g0016.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.5|1|1|1|6|123|393; (*GB) gi|359487320|ref|XP_003633566.1| (e_value=0.0) PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Vitis vinifera];; (*SWP) sp|Q9Z2Z9|GFPT2_MOUSE (e_value=9e-137) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Mus musculus GN=Gfpt2 PE=2 SV=3;; (*TAIR) AT3G24090.1 (e_value=0.0) | Symbols: | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971 REVERSE LENGTH=677;; (*ITAG) Solyc01g087870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising "; GO:0008152,GO:0005975,GO:0005737 NbS00018368g0018.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|2|602|187; (*GB) gi|356508402|ref|XP_003522946.1| (e_value=8e-107) PREDICTED: N-alpha-acetyltransferase 11-like [Glycine max];; (*SWP) sp|Q3UX61|NAA11_MOUSE (e_value=2e-72) N-alpha-acetyltransferase 11 OS=Mus musculus GN=Naa11 PE=2 SV=1;; (*TAIR) AT5G13780.1 (e_value=1e-105) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:4447610-4448603 REVERSE LENGTH=192;; (*ITAG) Solyc01g087900.2.1 (e_value=4e-114) genomic_reference:SL2.40ch01 gene_region:74528983-74532682 transcript_region:SL2.40ch01:74528983..74532682- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 20, NatB catalytic subunit (AHRD V1 **** NAA20_DICDI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00018368g0017.1 protein AED:0.69 eAED:0.77 QI:0|0|0.2|0.6|1|1|5|0|276; (*GB) gi|359487320|ref|XP_003633566.1| (e_value=3e-147) PREDICTED: glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2 [Vitis vinifera];; (*SWP) sp|P82808|GFPT1_RAT (e_value=5e-73) Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Rattus norvegicus GN=Gfpt1 PE=1 SV=3;; (*TAIR) AT3G24090.1 (e_value=3e-133) | Symbols: | glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971 REVERSE LENGTH=677;; (*ITAG) Solyc01g087870.2.1 (e_value=3e-160) genomic_reference:SL2.40ch01 gene_region:74487683-74501744 transcript_region:SL2.40ch01:74487683..74501744- go_terms:GO:0008152,GO:0005975,GO:0005737 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 ***- A8IZE7_CHLRE); contains Interpro domain(s) IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising "; GO:0008152,GO:0005975,GO:0005737 NbS00017813g0001.1 protein AED:0.33 eAED:0.34 QI:0|0.5|0.33|1|1|1|3|0|584; (*GB) gi|255567947|ref|XP_002524951.1| (e_value=4e-171) Protein FRIGIDA, putative [Ricinus communis];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=2e-12) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=1e-69) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc04g008840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2458319-2461577 transcript_region:SL2.40ch04:2458319..2461577- functional_description:"ABI3-interacting protein 2 (Fragment) (AHRD V1 *-*- A7Y4K9_PINSY); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00007408g0003.1 protein AED:0.03 eAED:0.03 QI:212|1|1|1|1|1|3|183|170; (*GB) gi|18398279|ref|NP_566336.1| (e_value=1e-105) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=6e-98) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT3G08890.2 (e_value=3e-108) | Symbols: | Protein of unknown function, DUF538 | chr3:2706701-2707775 FORWARD LENGTH=170;; (*ITAG) Solyc10g076420.1.1 (e_value=7e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58725353-58728900 transcript_region:SL2.40ch10:58725353..58728900+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00003867g0005.1 protein AED:0.17 eAED:0.17 QI:171|1|0.9|1|1|1|10|0|595; (*GB) gi|356501035|ref|XP_003519334.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100795617 isoform 1 [Glycine max];; (*TAIR) AT1G23170.2 (e_value=1e-158) | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:8212724-8215516 FORWARD LENGTH=615;; (*ITAG) Solyc11g011220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4270031-4275016 transcript_region:SL2.40ch11:4270031..4275016- functional_description:"Unknown Protein (AHRD V1)"; NbC25031809g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|134307089|gb|ABO72542.1| (e_value=3e-142) inositol polyphosphate kinase [Solanum tuberosum];; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=3e-95) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=1e-89) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc08g005130.1.1 (e_value=4e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:83625-84674 transcript_region:SL2.40ch08:83625..84674- go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00045132g0002.1 protein AED:0.01 eAED:0.01 QI:160|1|1|1|0|1|2|260|92; (*GB) gi|255552902|ref|XP_002517494.1| (e_value=5e-35) transcription regulator, putative [Ricinus communis];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=1e-18) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT3G28857.1 (e_value=1e-33) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92;; (*ITAG) Solyc02g067380.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:32160671-32162251 transcript_region:SL2.40ch02:32160671..32162251+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00000462g0017.1 protein AED:0.17 eAED:0.21 QI:0|0.25|0.2|0.8|0.5|0.8|5|0|262; (*GB) gi|297735096|emb|CBI17458.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SFZ3|BH110_ARATH (e_value=1e-27) Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2;; (*TAIR) AT1G27660.1 (e_value=9e-29) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9621701-9625666 FORWARD LENGTH=453;; (*ITAG) Solyc02g084880.2.1 (e_value=4e-105) genomic_reference:SL2.40ch02 gene_region:42524468-42528076 transcript_region:SL2.40ch02:42524468..42528076+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00000462g0015.1 protein AED:0.07 eAED:0.07 QI:582|1|0.66|1|0.5|0.33|3|0|370; (*GB) gi|350540664|ref|NP_001234876.1| (e_value=0.0) mitogen-activated protein kinase 8 [Solanum lycopersicum];; (*SWP) sp|Q39027|MPK7_ARATH (e_value=0.0) Mitogen-activated protein kinase 7 OS=Arabidopsis thaliana GN=MPK7 PE=2 SV=2;; (*TAIR) AT2G18170.1 (e_value=0.0) | Symbols: ATMPK7, MPK7 | MAP kinase 7 | chr2:7908178-7909374 REVERSE LENGTH=368;; (*ITAG) Solyc02g084870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42513397-42516636 transcript_region:SL2.40ch02:42513397..42516636- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase 7 (AHRD V1 ***- D9IV43_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000462g0011.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|573; (*GB) gi|255561034|ref|XP_002521529.1| (e_value=6e-167) Disease resistance protein RGA2, putative [Ricinus communis];; (*SWP) sp|Q38834|R13L4_ARATH (e_value=1e-146) Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2;; (*TAIR) AT3G50950.1 (e_value=9e-148) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc02g084890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42528612-42531164 transcript_region:SL2.40ch02:42528612..42531164- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00000462g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|224077864|ref|XP_002305442.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=5e-22) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT4G34590.1 (e_value=2e-42) | Symbols: ATB2, GBF6, AtbZIP11, BZIP11 | G-box binding factor 6 | chr4:16522449-16522928 FORWARD LENGTH=159;; (*ITAG) Solyc02g084860.1.1 (e_value=7e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42509369-42509803 transcript_region:SL2.40ch02:42509369..42509803- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* C0KYN1_SOLLC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00000462g0003.1 protein AED:0.37 eAED:0.37 QI:109|1|0.5|1|0|0|2|0|215; (*GB) gi|172051311|gb|ACB70404.1| (e_value=4e-122) CC-NBS-LRR putative disease resistance protein, partial [Solanum melongena];; (*SWP) sp|Q38834|R13L4_ARATH (e_value=3e-65) Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2;; (*TAIR) AT3G50950.1 (e_value=2e-66) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc02g084890.1.1 (e_value=7e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42528612-42531164 transcript_region:SL2.40ch02:42528612..42531164- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00022508g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|316996023|dbj|BAD83524.2| (e_value=4e-80) ATP synthase F1 subunit 1 [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-81) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=1e-78) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc11g039980.1.1 (e_value=2e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00020056g0005.1 protein AED:0.20 eAED:0.21 QI:270|0.8|0.81|1|0.73|0.81|16|337|488; (*GB) gi|255574875|ref|XP_002528344.1| (e_value=0.0) 3-isopropylmalate dehydratase, putative [Ricinus communis];; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=0.0) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=0.0) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00020056g0111.1 protein AED:0.13 eAED:0.13 QI:0|0.84|0.75|1|0.84|0.8|20|0|1023 NbS00020056g0106.1 protein AED:0.40 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|120 NbC25556283g0001.1 protein AED:0.16 eAED:0.31 QI:0|0|0|1|1|1|2|0|100 NbS00000363g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|243; (*GB) gi|76573333|gb|ABA46771.1| (e_value=1e-66) unknown [Solanum tuberosum];; (*SWP) sp|Q9M354|AGD6_ARATH (e_value=3e-37) Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1;; (*TAIR) AT3G53710.2 (e_value=2e-38) | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-19905419 REVERSE LENGTH=459;; (*ITAG) Solyc09g010520.2.1 (e_value=6e-68) genomic_reference:SL2.40ch09 gene_region:3897831-3901988 transcript_region:SL2.40ch09:3897831..3901988+ go_terms:GO:0003677 functional_description:"ADP-ribosylation factor GTPase activating protein 1 (AHRD V1 *-*- Q0V8A7_BOVIN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00000363g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|125; (*ITAG) Solyc06g050740.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30014138-30015077 transcript_region:SL2.40ch06:30014138..30015077+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00015105g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|1|0.5|0.66|3|277|128 NbS00015105g0007.1 protein AED:0.32 eAED:0.49 QI:0|0|0.5|1|1|1|2|551|74 NbS00015105g0006.1 protein AED:0.09 eAED:0.09 QI:35|1|0.6|1|1|1|5|0|800; (*GB) gi|359494575|ref|XP_002267779.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267869 [Vitis vinifera];; (*TAIR) AT1G79090.2 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). | chr1:29749551-29752945 REVERSE LENGTH=793;; (*ITAG) Solyc12g017260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6447492-6458751 transcript_region:SL2.40ch12:6447492..6458751- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00012739g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=1e-39) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-14) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-13) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g043420.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:55463046-55467606 transcript_region:SL2.40ch05:55463046..55467606- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00012739g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|4|0|605; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=7e-153) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=3e-43) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=2e-26) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g043420.1.1 (e_value=4e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:55463046-55467606 transcript_region:SL2.40ch05:55463046..55467606- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00016984g0002.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|192; (*GB) gi|351726289|ref|NP_001238657.1| (e_value=1e-46) uncharacterized protein LOC100527609 [Glycine max];; (*TAIR) AT3G06145.1 (e_value=3e-30) | Symbols: | unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1860118-1860618 REVERSE LENGTH=166;; (*ITAG) Solyc01g080100.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:71766746-71769616 transcript_region:SL2.40ch01:71766746..71769616- functional_description:"Unknown Protein (AHRD V1)"; NbS00020983g0015.1 protein AED:0.02 eAED:0.02 QI:159|1|1|1|0.88|0.9|10|510|545; (*GB) gi|37983647|gb|AAR06293.1| (e_value=0.0) adenylosuccinate lyase [Nicotiana tabacum];; (*SWP) sp|Q9I0K9|PUR8_PSEAE (e_value=0.0) Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1;; (*TAIR) AT1G36280.1 (e_value=0.0) | Symbols: | L-Aspartase-like family protein | chr1:13640600-13642908 FORWARD LENGTH=527;; (*ITAG) Solyc07g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1326181-1332288 transcript_region:SL2.40ch07:1326181..1332288+ go_terms:GO:0005515 functional_description:"Adenylosuccinate lyase (AHRD V1 ***- Q6T7E9_TOBAC); contains Interpro domain(s) IPR004769 Adenylosuccinate lyase "; GO:0005515 NbS00020983g0010.1 protein AED:0.12 eAED:0.12 QI:181|1|1|1|1|1|4|445|475; (*GB) gi|133711805|gb|ABO36623.1| (e_value=0.0) putative RNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q5SNN4|C3H40_ORYSJ (e_value=0.0) Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1;; (*TAIR) AT1G07360.1 (e_value=0.0) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481;; (*ITAG) Solyc10g079190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60106005-60110030 transcript_region:SL2.40ch10:60106005..60110030- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Pre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00020983g0011.1 protein AED:0.38 eAED:0.39 QI:116|0.8|0.83|1|0.6|0.66|6|0|259; (*GB) gi|225439305|ref|XP_002267832.1| (e_value=3e-120) PREDICTED: 50S ribosomal protein L22, chloroplastic [Vitis vinifera];; (*SWP) sp|A6U864|RL22_SINMW (e_value=2e-25) 50S ribosomal protein L22 OS=Sinorhizobium medicae (strain WSM419) GN=rplV PE=3 SV=1;; (*TAIR) AT4G28360.1 (e_value=8e-103) | Symbols: | Ribosomal protein L22p/L17e family protein | chr4:14029294-14030926 REVERSE LENGTH=271;; (*ITAG) Solyc04g017680.2.1 (e_value=3e-142) genomic_reference:SL2.40ch04 gene_region:7754737-7758043 transcript_region:SL2.40ch04:7754737..7758043+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L22-like (AHRD V1 ***- Q5ZDK4_ORYSJ); contains Interpro domain(s) IPR005727 Ribosomal protein L22, bacterial-type "; GO:0005840,GO:0015934 NbS00026537g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|2346976|dbj|BAA21922.1| (e_value=8e-91) ZPT2-13 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=1e-35) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT3G53600.1 (e_value=3e-38) | Symbols: | C2H2-type zinc finger family protein | chr3:19875532-19876059 FORWARD LENGTH=175;; (*ITAG) Solyc11g073060.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53255537-53256001 transcript_region:SL2.40ch11:53255537..53256001- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00026537g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|2346984|dbj|BAA21926.1| (e_value=3e-19) ZPT2-9 [Petunia x hybrida];; (*ITAG) Solyc05g054650.1.1 (e_value=7e-13) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:63667425-63667883 transcript_region:SL2.40ch05:63667425..63667883+ go_terms:GO:0003700 functional_description:"Zinc finger transcription factor ZFP19 (AHRD V1 **** Q84NH1_ORYSJ); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00040845g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0.25|1|1|1|4|0|723; (*GB) gi|255587116|ref|XP_002534143.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT2G38970.1 (e_value=0.0) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr2:16274135-16276651 FORWARD LENGTH=692;; (*ITAG) Solyc05g056140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64680558-64685370 transcript_region:SL2.40ch05:64680558..64685370- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00006645g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|134307089|gb|ABO72542.1| (e_value=1e-153) inositol polyphosphate kinase [Solanum tuberosum];; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=2e-100) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=2e-95) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc08g005130.1.1 (e_value=5e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:83625-84674 transcript_region:SL2.40ch08:83625..84674- go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00035899g0008.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.66|0.5|0.66|3|0|480; (*GB) gi|225452887|ref|XP_002283932.1| (e_value=2e-65) PREDICTED: uncharacterized protein At5g39570 [Vitis vinifera];; (*SWP) sp|Q9FKA5|Y5957_ARATH (e_value=8e-33) Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1;; (*TAIR) AT5G39570.1 (e_value=6e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:15844021-15845827 FORWARD LENGTH=381;; (*ITAG) Solyc02g088260.2.1 (e_value=1e-120) genomic_reference:SL2.40ch02 gene_region:44988643-44994359 transcript_region:SL2.40ch02:44988643..44994359- functional_description:"Latex abundant protein 1 (AHRD V1 *--- Q6XNP6_HEVBR)"; NbS00035899g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.69|1|0.75|0.76|13|261|711; (*GB) gi|359489005|ref|XP_002278669.2| (e_value=0.0) PREDICTED: phosphate transporter PHO1 homolog 9-like [Vitis vinifera];; (*SWP) sp|Q9LJW0|PHO19_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 9 OS=Arabidopsis thaliana GN=PHO1-H9 PE=2 SV=1;; (*TAIR) AT3G29060.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr3:11044990-11048465 REVERSE LENGTH=800;; (*ITAG) Solyc02g088220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44955291-44959097 transcript_region:SL2.40ch02:44955291..44959097- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00031056g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|104 NbS00032850g0002.1 protein AED:0.36 eAED:0.43 QI:0|0|0|1|0|0|2|0|130; (*GB) gi|356553023|ref|XP_003544858.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100777832 [Glycine max];; (*TAIR) AT4G01575.1 (e_value=5e-23) | Symbols: | serine protease inhibitor, Kazal-type family protein | chr4:682040-682474 REVERSE LENGTH=144;; (*ITAG) Solyc03g080040.1.1 (e_value=2e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45470826-45471218 transcript_region:SL2.40ch03:45470826..45471218+ go_terms:GO:0004867 functional_description:"Serine-type endopeptidase inhibitor (AHRD V1 *-** B6TFT9_MAIZE)"; GO:0004867 NbS00048914g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|406; (*GB) gi|356545147|ref|XP_003541006.1| (e_value=8e-134) PREDICTED: uncharacterized protein LOC100785998 [Glycine max];; (*TAIR) AT4G24320.1 (e_value=4e-120) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:12602298-12603485 REVERSE LENGTH=395;; (*ITAG) Solyc01g103640.2.1 (e_value=1e-161) genomic_reference:SL2.40ch01 gene_region:83955588-83956758 transcript_region:SL2.40ch01:83955588..83956758- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00048884g0003.1 protein AED:0.17 eAED:0.17 QI:60|1|1|1|1|1|4|289|123; (*GB) gi|350539055|ref|NP_001234116.1| (e_value=1e-76) similar to 60S ribosomal protein L35 [Solanum lycopersicum];; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=1e-74) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=3e-75) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc04g010240.2.1 (e_value=1e-80) genomic_reference:SL2.40ch04 gene_region:3562006-3565042 transcript_region:SL2.40ch04:3562006..3565042- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00003900g0025.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|0.5|2|0|315; (*GB) gi|225454236|ref|XP_002274751.1| (e_value=6e-150) PREDICTED: gibberellin 20 oxidase 1-B [Vitis vinifera];; (*SWP) sp|O04706|GAO1B_WHEAT (e_value=1e-33) Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1;; (*TAIR) AT4G23340.1 (e_value=4e-128) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12195719-12196793 REVERSE LENGTH=324;; (*ITAG) Solyc03g025490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7271287-7272707 transcript_region:SL2.40ch03:7271287..7272707+ go_terms:GO:0045544 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 **** Q9FGV8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00003900g0017.1 protein AED:0.36 eAED:0.36 QI:0|0|0.25|0.5|0|0.25|4|263|145; (*ITAG) Solyc03g025480.2.1 (e_value=4e-16) genomic_reference:SL2.40ch03 gene_region:7264938-7268774 transcript_region:SL2.40ch03:7264938..7268774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003900g0004.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0|0.66|1|1|3|0|108; (*GB) gi|255545256|ref|XP_002513689.1| (e_value=2e-64) 60S ribosomal protein L36e, putative [Ricinus communis];; (*SWP) sp|O80929|RL361_ARATH (e_value=7e-55) 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1;; (*TAIR) AT2G37600.2 (e_value=6e-56) | Symbols: | Ribosomal protein L36e family protein | chr2:15774410-15775203 REVERSE LENGTH=113;; (*ITAG) Solyc03g025520.2.1 (e_value=7e-71) genomic_reference:SL2.40ch03 gene_region:7288938-7290880 transcript_region:SL2.40ch03:7288938..7290880+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735,GO:0003723 NbS00003900g0019.1 protein AED:0.04 eAED:0.04 QI:152|0.8|0.83|1|0.8|0.83|6|149|289; (*GB) gi|224122338|ref|XP_002318810.1| (e_value=7e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25600.1 (e_value=5e-65) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr4:13060712-13062359 FORWARD LENGTH=291;; (*ITAG) Solyc03g025500.2.1 (e_value=5e-155) genomic_reference:SL2.40ch03 gene_region:7273491-7277006 transcript_region:SL2.40ch03:7273491..7277006- go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00003900g0021.1 protein AED:0.12 eAED:0.12 QI:304|1|0.9|1|1|1|10|466|961; (*GB) gi|356529194|ref|XP_003533181.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100780360 [Glycine max];; (*TAIR) AT5G23890.1 (e_value=0.0) | Symbols: | LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8058789-8063005 FORWARD LENGTH=946;; (*ITAG) Solyc03g025530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7291651-7299172 transcript_region:SL2.40ch03:7291651..7299172- functional_description:"S-layer domain protein (AHRD V1 *-*- B2J947_NOSP7); contains Interpro domain(s) IPR001119 S-layer homology region "; NbS00003900g0023.1 protein AED:0.12 eAED:0.12 QI:0|1|0.92|1|0.91|0.92|13|0|570; (*GB) gi|225464483|ref|XP_002268591.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Vitis vinifera];; (*SWP) sp|Q9LKF9|CPSF2_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2;; (*TAIR) AT5G23880.1 (e_value=0.0) | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739;; (*ITAG) Solyc03g025540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7302412-7321563 transcript_region:SL2.40ch03:7302412..7321563- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 2 (AHRD V1 **-- C0HA24_SALSA); contains Interpro domain(s) IPR011108 RNA-metabolising metallo-beta-lactamase "; GO:0005515 NbS00003900g0022.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.66|0.83|0.8|0.83|6|261|182; (*GB) gi|356530856|ref|XP_003533995.1| (e_value=2e-98) PREDICTED: cleavage and polyadenylation specificity factor subunit 2-like isoform 1 [Glycine max];; (*SWP) sp|Q9LKF9|CPSF2_ARATH (e_value=1e-88) Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2;; (*TAIR) AT5G23880.1 (e_value=7e-90) | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739;; (*ITAG) Solyc03g025540.2.1 (e_value=3e-112) genomic_reference:SL2.40ch03 gene_region:7302412-7321563 transcript_region:SL2.40ch03:7302412..7321563- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 2 (AHRD V1 **-- C0HA24_SALSA); contains Interpro domain(s) IPR011108 RNA-metabolising metallo-beta-lactamase "; GO:0005515 NbS00003900g0028.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0.4|1|0.25|0.4|5|0|438; (*GB) gi|255545254|ref|XP_002513688.1| (e_value=0.0) calmodulin-binding heat-shock protein, putative [Ricinus communis];; (*TAIR) AT3G49050.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18181498-18183613 FORWARD LENGTH=477;; (*ITAG) Solyc03g025510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7278415-7283352 transcript_region:SL2.40ch03:7278415..7283352- go_terms:GO:0005516 functional_description:"Calmodulin-binding heat shock protein (AHRD V1 **-* Q1RN86_GOSHI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00029651g0001.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|147; (*GB) gi|224080967|ref|XP_002306247.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FY84|PEN2_ARATH (e_value=2e-52) Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana GN=At5g09310 PE=2 SV=1;; (*TAIR) AT5G09310.1 (e_value=2e-53) | Symbols: | CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr5:2887403-2888501 REVERSE LENGTH=146;; (*ITAG) Solyc06g016760.1.1 (e_value=6e-49) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:9564694-9565038 transcript_region:SL2.40ch06:9564694..9565038- functional_description:"Gamma-secretase subunit PEN2-like (AHRD V1 *-*- Q5JN39_ORYSJ); contains Interpro domain(s) IPR019379 Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit "; NbS00022724g0010.1 protein AED:0.41 eAED:0.41 QI:0|0.83|0.71|1|0.66|0.71|7|141|139; (*GB) gi|363808256|ref|NP_001242493.1| (e_value=4e-92) uncharacterized protein LOC100807064 [Glycine max];; (*SWP) sp|Q9WTR7|SC11C_RAT (e_value=4e-52) Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3;; (*TAIR) AT1G52600.1 (e_value=2e-91) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19590612-19592486 FORWARD LENGTH=180;; (*ITAG) Solyc12g006540.1.1 (e_value=8e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1050794-1055944 transcript_region:SL2.40ch12:1050794..1055944+ go_terms:GO:0016020 functional_description:"Signal peptidase complex catalytic subunit SEC11A (AHRD V1 ***- C1BS39_9MAXI); contains Interpro domain(s) IPR001733 Peptidase S26B, eukaryotic signal peptidase "; GO:0016020 NbS00022724g0013.1 protein AED:0.66 eAED:0.69 QI:0|0|0|0.4|0|0.2|5|0|196; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-18) hypothetical protein [Nicotiana tabacum]; NbS00022724g0012.1 protein AED:0.37 eAED:0.46 QI:0|0|0|1|0|0|3|0|98 NbS00022724g0011.1 protein AED:0.35 eAED:0.46 QI:0|0|0|1|0|0|3|0|90; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-14) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g010680.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:5698129-5701473 transcript_region:SL2.40ch01:5698129..5701473+ functional_description:"Genomic DNA chromosome 5 P1 clone MRD20 (AHRD V1 *--- Q9FH72_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00020592g0004.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|452; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=0.0) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT1G14330.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:4890375-4891700 REVERSE LENGTH=441;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00032094g0015.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|6|0|571; (*GB) gi|359495139|ref|XP_002264394.2| (e_value=0.0) PREDICTED: laccase-14 [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=0.0) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=0.0) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc12g056820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00032094g0019.1 protein AED:0.08 eAED:0.13 QI:0|0.33|0.28|0.85|0.16|0.28|7|0|564; (*GB) gi|359495139|ref|XP_002264394.2| (e_value=0.0) PREDICTED: laccase-14 [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=3e-179) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=2e-180) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc04g072280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56905173-56909198 transcript_region:SL2.40ch04:56905173..56909198+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00032094g0020.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.33|3|0|575; (*GB) gi|224062770|ref|XP_002300886.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O65012|C78A4_PINRA (e_value=0.0) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT5G09970.1 (e_value=0.0) | Symbols: CYP78A7 | cytochrome P450, family 78, subfamily A, polypeptide 7 | chr5:3112241-3113987 FORWARD LENGTH=536;; (*ITAG) Solyc12g056810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48247405-48249140 transcript_region:SL2.40ch12:48247405..48249140+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00053552g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|0|1|2|0|227; (*GB) gi|359474801|ref|XP_002279494.2| (e_value=8e-76) PREDICTED: coiled-coil domain-containing protein 124-A-like [Vitis vinifera];; (*SWP) sp|Q96CT7|CC124_HUMAN (e_value=1e-18) Coiled-coil domain-containing protein 124 OS=Homo sapiens GN=CCDC124 PE=1 SV=1;; (*TAIR) AT1G16210.1 (e_value=3e-76) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). | chr1:5546352-5547447 REVERSE LENGTH=234;; (*ITAG) Solyc01g111940.2.1 (e_value=6e-91) genomic_reference:SL2.40ch01 gene_region:89857764-89861925 transcript_region:SL2.40ch01:89857764..89861925+ functional_description:"Coiled-coil domain-containing protein 124 (AHRD V1 *-*- CC124_XENTR); contains Interpro domain(s) IPR010422 Protein of unknown function DUF1014 "; NbS00037707g0007.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.87|0.88|9|74|476; (*GB) gi|224058595|ref|XP_002299557.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=0.0) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.1 (e_value=0.0) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=472;; (*ITAG) Solyc08g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60891782-60894197 transcript_region:SL2.40ch08:60891782..60894197+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00037707g0009.1 protein AED:0.15 eAED:0.17 QI:24|0.88|0.78|1|0.5|0.52|19|0|804; (*GB) gi|225426838|ref|XP_002276704.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266763 [Vitis vinifera];; (*SWP) sp|F4JP36|HAP2_ARATH (e_value=0.0) Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1;; (*TAIR) AT4G11720.1 (e_value=0.0) | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063291-7066784 FORWARD LENGTH=705;; (*ITAG) Solyc08g080450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60903285-60911855 transcript_region:SL2.40ch08:60903285..60911855- functional_description:"Generative cell specific-1 (Fragment) (AHRD V1 ***- Q2PGG4_CHLRE); contains Interpro domain(s) IPR018928 Generative cell specific-1, HAP2-GCS1 "; NbS00007368g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|186; (*GB) gi|359489616|ref|XP_002267348.2| (e_value=3e-92) PREDICTED: (+)-neomenthol dehydrogenase-like [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=1e-85) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=1e-86) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094220.2.1 (e_value=7e-118) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00017862g0005.1 protein AED:0.41 eAED:0.41 QI:63|0.76|0.64|0.92|0.46|0.57|14|0|430; (*GB) gi|25453061|sp|Q9FS87.1|IVD2_SOLTU (e_value=0.0) RecName: Full=Isovaleryl-CoA dehydrogenase 2, mitochondrial; Short=IVD 2; Flags: Precursor;; (*SWP) sp|Q9FS87|IVD2_SOLTU (e_value=0.0) Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1;; (*TAIR) AT3G45300.1 (e_value=0.0) | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydrogenase | chr3:16621659-16624848 REVERSE LENGTH=409;; (*ITAG) Solyc11g069180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50892679-50899807 transcript_region:SL2.40ch11:50892679..50899807+ go_terms:GO:0055114 functional_description:"Isovaleryl-CoA dehydrogenase (AHRD V1 ***- Q0MX57_BETVU); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00017862g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.72|0.66|1|0.81|0.83|12|118|786; (*GB) gi|350537149|ref|NP_001233771.1| (e_value=0.0) auxin response factor 4 [Solanum lycopersicum];; (*SWP) sp|Q9ZTX9|ARFD_ARATH (e_value=0.0) Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1;; (*TAIR) AT5G60450.1 (e_value=0.0) | Symbols: ARF4 | auxin response factor 4 | chr5:24308558-24312187 REVERSE LENGTH=788;; (*ITAG) Solyc11g069190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50901128-50909553 transcript_region:SL2.40ch11:50901128..50909553- go_terms:GO:0003700 functional_description:"Auxin response factor 4 (AHRD V1 **** Q2LAI9_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00019811g0001.1 protein AED:0.12 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|156; (*GB) gi|357509939|ref|XP_003625258.1| (e_value=2e-46) Seed maturation protein [Medicago truncatula];; (*SWP) sp|Q01417|PM1_SOYBN (e_value=3e-41) 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1;; (*TAIR) AT5G06760.1 (e_value=1e-40) | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 | chr5:2089754-2090313 REVERSE LENGTH=158;; (*ITAG) Solyc10g078760.1.1 (e_value=4e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59803871-59804233 transcript_region:SL2.40ch10:59803871..59804233- go_terms:GO:0009790 functional_description:"Seed maturation protein LEA 4 (AHRD V1 ***- Q941M2_9FABA); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00028604g0004.1 protein AED:0.13 eAED:0.13 QI:77|0.91|0.92|1|0.83|0.92|13|0|1022; (*GB) gi|224077052|ref|XP_002305110.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q61107|GBP4_MOUSE (e_value=9e-39) Guanylate-binding protein 4 OS=Mus musculus GN=Gbp4 PE=1 SV=1;; (*TAIR) AT5G46070.1 (e_value=0.0) | Symbols: | Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082;; (*ITAG) Solyc02g077600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37063720-37072429 transcript_region:SL2.40ch02:37063720..37072429+ go_terms:GO:0005525 functional_description:"Guanylate-binding protein 10 (AHRD V1 *-*- Q000W5_MOUSE); contains Interpro domain(s) IPR015894 Guanylate-binding protein, N-terminal "; GO:0005525 NbS00003996g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|555; (*GB) gi|224118316|ref|XP_002331452.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28120.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:11985934-11987667 FORWARD LENGTH=577;; (*ITAG) Solyc06g011590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:8257906-8259558 transcript_region:SL2.40ch06:8257906..8259558- functional_description:"Nodulin family protein (AHRD V1 ***- D7LIF1_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00003996g0016.1 protein AED:0.07 eAED:0.14 QI:0|0.72|0.68|1|0.72|0.84|19|0|1601; (*GB) gi|255586801|ref|XP_002534015.1| (e_value=0.0) suppressor of ty, putative [Ricinus communis];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=1e-42) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT5G04290.1 (e_value=4e-162) | Symbols: KTF1, SPT5L | kow domain-containing transcription factor 1 | chr5:1196069-1202653 FORWARD LENGTH=1493;; (*ITAG) Solyc11g008150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2415664-2426131 transcript_region:SL2.40ch11:2415664..2426131- go_terms:GO:0032968 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-*- B6JZQ2_SCHJY); contains Interpro domain(s) IPR005100 Supt5 repeat "; GO:0032968 NbS00003996g0011.1 protein AED:0.17 eAED:0.17 QI:462|1|0.66|1|0.87|0.77|9|0|753; (*GB) gi|255585357|ref|XP_002533375.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|P51281|YCF45_PORPU (e_value=3e-151) Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1;; (*TAIR) AT3G10420.2 (e_value=0.0) | Symbols: SPD1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3239307-3242274 FORWARD LENGTH=684;; (*ITAG) Solyc11g008250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2479420-2484103 transcript_region:SL2.40ch11:2479420..2484103- go_terms:GO:0005524,GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- B4B323_9CHRO); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00003996g0012.1 protein AED:0.38 eAED:0.41 QI:0|0.66|0.5|1|1|0.75|4|308|412; (*GB) gi|356575516|ref|XP_003555886.1| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100809519 [Glycine max];; (*SWP) sp|Q99070|GRP2_SORBI (e_value=3e-24) Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1;; (*TAIR) AT1G60650.2 (e_value=1e-43) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr1:22340089-22342148 FORWARD LENGTH=292;; (*ITAG) Solyc03g071560.2.1 (e_value=4e-64) genomic_reference:SL2.40ch03 gene_region:41147503-41156677 transcript_region:SL2.40ch03:41147503..41156677+ go_terms:GO:0008143,GO:0003730 functional_description:"RNA-binding protein-like (AHRD V1 *-** Q8RWN5_ARATH); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008143,GO:0003730 NbS00005605g0010.1 protein AED:0.25 eAED:0.40 QI:0|0|0|0.2|0.88|0.8|10|0|434; (*GB) gi|359487944|ref|XP_002265918.2| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100260652 [Vitis vinifera];; (*TAIR) AT3G48860.1 (e_value=4e-27) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12232 Blast hits to 9546 proteins in 892 species: Archae - 172; Bacteria - 1174; Metazoa - 6487; Fungi - 1343; Plants - 856; Viruses - 50; Other Eukaryotes - 2150 (source: NCBI BLink). | chr3:18117619-18120865 FORWARD LENGTH=494;; (*ITAG) Solyc10g037940.1.1 (e_value=5e-78) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:17926015-17927048 transcript_region:SL2.40ch10:17926015..17927048- functional_description:"Unknown Protein (AHRD V1)"; NbS00043632g0005.1 protein AED:0.10 eAED:0.11 QI:0|0.54|0.5|1|0.81|0.83|12|0|1319; (*GB) gi|4204793|gb|AAD10836.1| (e_value=0.0) P-glycoprotein [Solanum tuberosum];; (*SWP) sp|Q9ZR72|AB1B_ARATH (e_value=0.0) ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1;; (*TAIR) AT2G36910.1 (e_value=0.0) | Symbols: ATPGP1, PGP1, ABCB1 | ATP binding cassette subfamily B1 | chr2:15502162-15507050 FORWARD LENGTH=1286;; (*ITAG) Solyc09g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1690129-1697213 transcript_region:SL2.40ch09:1690129..1697213- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00057139g0001.1 protein AED:0.25 eAED:0.25 QI:0|0.25|0.2|1|1|1|5|0|323; (*GB) gi|225443847|ref|XP_002275486.1| (e_value=2e-83) PREDICTED: pyruvate decarboxylase isozyme 1 [Vitis vinifera];; (*SWP) sp|P51850|PDC1_PEA (e_value=1e-81) Pyruvate decarboxylase isozyme 1 OS=Pisum sativum GN=PDC1 PE=2 SV=1;; (*TAIR) AT4G33070.1 (e_value=5e-84) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr4:15952519-15954676 REVERSE LENGTH=607;; (*ITAG) Solyc02g077240.2.1 (e_value=2e-92) genomic_reference:SL2.40ch02 gene_region:36818091-36821185 transcript_region:SL2.40ch02:36818091..36821185+ go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase (AHRD V1 **** Q1I1D9_CITSI); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00013354g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|319; (*GB) gi|350538915|ref|NP_001234365.1| (e_value=2e-167) DELLA protein GAI [Solanum lycopersicum];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=6e-169) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=6e-118) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=4e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00016567g0004.1 protein AED:0.05 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|356; (*GB) gi|18423435|ref|NP_568777.1| (e_value=2e-31) WRKY DNA-binding protein 27 [Arabidopsis thaliana];; (*SWP) sp|Q9FLX8|WRK27_ARATH (e_value=6e-33) Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1;; (*TAIR) AT5G52830.1 (e_value=4e-34) | Symbols: WRKY27, ATWRKY27 | WRKY DNA-binding protein 27 | chr5:21410996-21412218 FORWARD LENGTH=348;; (*ITAG) Solyc05g050060.1.1 (e_value=3e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59189414-59190607 transcript_region:SL2.40ch05:59189414..59190607- go_terms:GO:0045449 functional_description:"WRKY transcription factor 22 (AHRD V1 *-*- C5H9Z0_BRANA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00034748g0004.1 protein AED:0.18 eAED:0.18 QI:200|1|0.33|1|1|1|3|0|365; (*GB) gi|82621148|gb|ABB86262.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|B2RYD2|ESRP1_RAT (e_value=7e-33) Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2;; (*TAIR) AT3G20890.1 (e_value=1e-78) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7319939-7321054 FORWARD LENGTH=292;; (*ITAG) Solyc11g065730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48394251-48402079 transcript_region:SL2.40ch11:48394251..48402079- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein H1 (AHRD V1 **-- Q6P0V0_DANRE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00004941g0102.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|384 NbS00004941g0202.1 protein AED:0.10 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|156 NbS00004941g0201.1 protein AED:0.25 eAED:0.28 QI:278|0|0.66|1|1|1|3|580|303 NbS00004941g0310.1 protein AED:0.12 eAED:0.09 QI:250|0.83|0.84|0.92|0.75|0.69|13|743|308 NbS00004941g0302.1 protein AED:0.07 eAED:0.07 QI:279|0.5|0.6|1|1|1|5|107|425 NbS00052142g0004.1 protein AED:0.08 eAED:0.10 QI:0|0.85|0.62|1|1|1|8|0|460; (*GB) gi|225425613|ref|XP_002266099.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=2e-92) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT3G26610.1 (e_value=4e-177) | Symbols: | Pectin lyase-like superfamily protein | chr3:9777025-9780267 FORWARD LENGTH=470;; (*ITAG) Solyc05g005040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58049-62049 transcript_region:SL2.40ch05:58049..62049- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q38958_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00034187g0001.1 protein AED:0.08 eAED:0.08 QI:179|1|1|1|0.87|0.77|9|290|463; (*GB) gi|296082202|emb|CBI21207.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L9Y0|SCP25_ARATH (e_value=0.0) Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2;; (*TAIR) AT3G02110.1 (e_value=0.0) | Symbols: scpl25 | serine carboxypeptidase-like 25 | chr3:370902-373637 REVERSE LENGTH=473;; (*ITAG) Solyc02g088820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45352857-45358218 transcript_region:SL2.40ch02:45352857..45358218- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00061422g0003.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.5|0|0|2|0|73 NbS00000478g0005.1 protein AED:0.11 eAED:0.11 QI:165|0.9|0.81|1|0.7|0.81|11|0|583; (*GB) gi|390432219|gb|AFL91701.1| (e_value=0.0) anthranilate synthase alpha-subunit 2 [Mitragyna speciosa];; (*SWP) sp|P32069|TRPX_ARATH (e_value=0.0) Anthranilate synthase component I-2, chloroplastic OS=Arabidopsis thaliana GN=ASA2 PE=2 SV=1;; (*TAIR) AT2G29690.1 (e_value=0.0) | Symbols: ASA2, ATHANSYNAB | anthranilate synthase 2 | chr2:12693899-12696791 FORWARD LENGTH=621;; (*ITAG) Solyc06g006100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1130983-1138234 transcript_region:SL2.40ch06:1130983..1138234+ go_terms:GO:0046820,GO:0004049 functional_description:"Anthranilate synthase component I family protein expressed (AHRD V1 **** Q10B97_ORYSJ); contains Interpro domain(s) IPR005256 Anthranilate synthase component I "; GO:0046820,GO:0004049 NbS00036601g0004.1 protein AED:0.24 eAED:0.26 QI:0|0.91|0.76|1|0.91|0.84|13|377|973; (*GB) gi|359493969|ref|XP_002283802.2| (e_value=0.0) PREDICTED: chaperone protein ClpD, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P42762|CLPD_ARATH (e_value=0.0) Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1;; (*TAIR) AT5G51070.1 (e_value=0.0) | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:20764479-20768481 FORWARD LENGTH=945;; (*ITAG) Solyc03g117950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60977137-60983778 transcript_region:SL2.40ch03:60977137..60983778- go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0016021 functional_description:"Chaperone protein ClpB 1 (AHRD V1 **-- D0CK17_9SYNE); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0016021 NbS00047658g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.5|1|0.77|0.8|10|0|469; (*GB) gi|356563942|ref|XP_003550216.1| (e_value=0.0) PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Glycine max];; (*SWP) sp|Q4R713|CWC27_MACFA (e_value=9e-79) Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Macaca fascicularis GN=CWC27 PE=2 SV=1;; (*TAIR) AT4G33060.1 (e_value=0.0) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15948535-15951954 FORWARD LENGTH=504;; (*ITAG) Solyc08g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48997752-49017259 transcript_region:SL2.40ch08:48997752..49017259- go_terms:GO:0005634,GO:0006457 functional_description:"Peptidyl prolyl cis trans isomerase-like (AHRD V1 ***- Q5ZB85_ORYSJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005634,GO:0006457 NbS00047658g0009.1 protein AED:0.10 eAED:0.10 QI:282|1|1|1|0.5|0.66|3|232|132; (*GB) gi|225444688|ref|XP_002277730.1| (e_value=1e-47) PREDICTED: uncharacterized protein LOC100247308 [Vitis vinifera];; (*TAIR) AT5G20680.2 (e_value=4e-45) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 16 | chr5:6999221-7001596 FORWARD LENGTH=533;; (*ITAG) Solyc07g042020.2.1 (e_value=6e-55) genomic_reference:SL2.40ch07 gene_region:52206610-52210531 transcript_region:SL2.40ch07:52206610..52210531+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbC24763982g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|126567463|dbj|BAF48330.1| (e_value=6e-102) iron transporter protein IRT1 [Nicotiana tabacum];; (*SWP) sp|Q38856|IRT1_ARATH (e_value=1e-58) Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=2;; (*TAIR) AT4G19690.2 (e_value=8e-60) | Symbols: IRT1 | iron-regulated transporter 1 | chr4:10707487-10708723 FORWARD LENGTH=347;; (*ITAG) Solyc02g069200.1.1 (e_value=1e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33736849-33738098 transcript_region:SL2.40ch02:33736849..33738098- go_terms:GO:0005381 functional_description:"Zinc transporter protein (AHRD V1 **** C0L438_9MAGN); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0005381 NbS00047038g0003.1 protein AED:0.18 eAED:0.24 QI:50|0.5|0.33|1|0|0.33|3|0|211; (*GB) gi|297740001|emb|CBI30183.3| (e_value=7e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G27930.1 (e_value=5e-67) | Symbols: | PLATZ transcription factor family protein | chr2:11892369-11893488 FORWARD LENGTH=189;; (*ITAG) Solyc10g085800.1.1 (e_value=1e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64207015-64209086 transcript_region:SL2.40ch10:64207015..64209086- functional_description:"Zinc-binding family protein (AHRD V1 **-- D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00015416g0013.1 protein AED:0.20 eAED:0.20 QI:315|1|1|1|0.57|0.62|8|366|187; (*GB) gi|224103445|ref|XP_002313060.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NLY8|HA22K_ARATH (e_value=3e-77) HVA22-like protein k OS=Arabidopsis thaliana GN=HVA22K PE=2 SV=1;; (*TAIR) AT4G36720.1 (e_value=2e-78) | Symbols: HVA22K | HVA22-like protein K | chr4:17307769-17309668 FORWARD LENGTH=200;; (*ITAG) Solyc10g051300.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47366545-47373268 transcript_region:SL2.40ch10:47366545..47373268- go_terms:GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 ***- C3KJ86_ANOFI); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0042802 NbS00015416g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|168; (*GB) gi|45935142|gb|AAS79600.1| (e_value=6e-43) hypothetical protein [Ipomoea trifida];; (*SWP) sp|Q8VZ13|Y1816_ARATH (e_value=9e-18) Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1;; (*TAIR) AT5G22870.1 (e_value=2e-26) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:7647056-7647679 REVERSE LENGTH=207;; (*ITAG) Solyc11g066490.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49327287-49327913 transcript_region:SL2.40ch11:49327287..49327913+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00015416g0017.1 protein AED:0.29 eAED:0.31 QI:112|0.77|0.8|1|0.55|0.7|10|352|259; (*GB) gi|350535034|ref|NP_001234684.1| (e_value=3e-139) clp-like energy-dependent protease [Solanum lycopersicum];; (*SWP) sp|Q9SAA2|CLPP6_ARATH (e_value=6e-129) ATP-dependent Clp protease proteolytic subunit 6, chloroplastic OS=Arabidopsis thaliana GN=CLPP6 PE=1 SV=1;; (*TAIR) AT1G11750.1 (e_value=5e-130) | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease proteolytic subunit 6 | chr1:3967609-3969535 FORWARD LENGTH=271;; (*ITAG) Solyc10g051310.1.1 (e_value=5e-142) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47391169-47396091 transcript_region:SL2.40ch10:47391169..47396091- go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** Q42886_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site "; GO:0005515,GO:0004176 NbS00015416g0015.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|0|0|2|0|237; (*GB) gi|225428562|ref|XP_002284651.1| (e_value=8e-75) PREDICTED: E3 ubiquitin-protein ligase RNF5 [Vitis vinifera];; (*SWP) sp|Q09463|RNF5_CAEEL (e_value=3e-27) RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1;; (*TAIR) AT2G23780.1 (e_value=3e-60) | Symbols: | RING/U-box superfamily protein | chr2:10123551-10124234 REVERSE LENGTH=227;; (*ITAG) Solyc10g051270.1.1 (e_value=9e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47332777-47335853 transcript_region:SL2.40ch10:47332777..47335853- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 ***- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00031708g0002.1 protein AED:0.43 eAED:0.60 QI:467|0.8|0.33|1|0.4|0.33|6|0|49 NbS00002560g0005.1 protein AED:0.34 eAED:0.34 QI:79|0.66|0.7|1|0.55|0.5|10|0|381; (*GB) gi|359479546|ref|XP_002273076.2| (e_value=3e-82) PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Vitis vinifera];; (*TAIR) AT5G22320.1 (e_value=3e-74) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7388175-7390426 REVERSE LENGTH=452;; (*ITAG) Solyc11g068690.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50407358-50412796 transcript_region:SL2.40ch11:50407358..50412796+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00022602g0008.1 protein AED:0.06 eAED:0.06 QI:401|0.79|0.76|0.96|0.75|0.72|25|467|2766; (*GB) gi|359492962|ref|XP_003634489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254031 isoform 2 [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=0.0) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00027159g0009.1 protein AED:0.23 eAED:0.27 QI:0|0.45|0.08|1|0.36|0.5|12|0|1249; (*GB) gi|224139158|ref|XP_002326782.1| (e_value=5e-65) predicted protein [Populus trichocarpa];; (*TAIR) AT4G27860.2 (e_value=2e-41) | Symbols: | vacuolar iron transporter (VIT) family protein | chr4:13873808-13876240 FORWARD LENGTH=596;; (*ITAG) Solyc03g096800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52599162-52609670 transcript_region:SL2.40ch03:52599162..52609670+ functional_description:"At5g24290-like protein (Fragment) (AHRD V1 *-*- Q45H28_ARALY); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00027159g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.88|0.8|1|0.66|0.8|10|602|344; (*GB) gi|297742494|emb|CBI34643.3| (e_value=1e-169) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54IK2|TM120_DICDI (e_value=2e-30) Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1;; (*TAIR) AT4G10430.3 (e_value=4e-146) | Symbols: | TMPIT-like protein | chr4:6455110-6457996 REVERSE LENGTH=347;; (*ITAG) Solyc03g096810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52611236-52615785 transcript_region:SL2.40ch03:52611236..52615785- go_terms:GO:0005515 functional_description:"Transmembrane protein 120A (AHRD V1 ***- B5XCP1_SALSA); contains Interpro domain(s) IPR012926 TMPIT-like "; GO:0005515 NbS00029394g0002.1 protein AED:0.26 eAED:0.26 QI:112|1|1|1|0.33|0.28|7|161|150; (*GB) gi|82623419|gb|ABB87124.1| (e_value=2e-85) hypothetical protein [Solanum tuberosum];; (*SWP) sp|P19950|RS141_MAIZE (e_value=3e-80) 40S ribosomal protein S14 OS=Zea mays PE=3 SV=1;; (*TAIR) AT3G11510.1 (e_value=6e-81) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=3e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00029394g0010.1 protein AED:0.30 eAED:0.30 QI:184|1|1|1|0.8|0.81|11|415|367; (*GB) gi|359481615|ref|XP_002282010.2| (e_value=0.0) PREDICTED: sorting nexin-1 [Vitis vinifera];; (*SWP) sp|Q9FG38|SNX1_ARATH (e_value=0.0) Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1;; (*TAIR) AT5G06140.1 (e_value=0.0) | Symbols: SNX1, ATSNX1 | sorting nexin 1 | chr5:1856212-1858752 REVERSE LENGTH=402;; (*ITAG) Solyc09g010130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3503323-3510006 transcript_region:SL2.40ch09:3503323..3510006- go_terms:GO:0007154 functional_description:"Sorting nexin 1 (AHRD V1 ***- Q70YZ8_BRAOL); contains Interpro domain(s) IPR015404 Vps5 C-terminal "; GO:0007154 NbS00025622g0003.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|0|0.5|2|0|120; (*ITAG) Solyc06g084480.2.1 (e_value=3e-34) genomic_reference:SL2.40ch06 gene_region:45856487-45871420 transcript_region:SL2.40ch06:45856487..45871420+ go_terms:GO:0004252 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0004252 NbS00036611g0008.1 protein AED:0.14 eAED:0.14 QI:108|1|0.88|1|0.87|0.77|9|0|464; (*GB) gi|359811337|ref|NP_001241486.1| (e_value=0.0) uncharacterized protein LOC100784099 [Glycine max];; (*SWP) sp|P81795|IF2G_RAT (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00036611g0009.1 protein AED:0.35 eAED:0.52 QI:0|0.5|0.66|1|0.5|0.66|3|223|112; (*GB) gi|356529436|ref|XP_003533298.1| (e_value=7e-36) PREDICTED: dynein light chain 2, cytoplasmic-like [Glycine max];; (*SWP) sp|Q24117|DYL1_DROME (e_value=1e-30) Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1;; (*TAIR) AT4G15930.1 (e_value=1e-35) | Symbols: | Dynein light chain type 1 family protein | chr4:9036344-9037825 FORWARD LENGTH=123;; (*ITAG) Solyc01g066590.2.1 (e_value=4e-39) genomic_reference:SL2.40ch01 gene_region:67086017-67089572 transcript_region:SL2.40ch01:67086017..67089572- go_terms:GO:0008092,GO:0042803 functional_description:"Dynein light chain 2 cytoplasmic (AHRD V1 ***- B5XH01_SALSA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0008092,GO:0042803 NbS00036611g0007.1 protein AED:0.27 eAED:0.30 QI:0|0|0|1|1|1|2|0|151; (*GB) gi|255551795|ref|XP_002516943.1| (e_value=8e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G49100.1 (e_value=4e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19897700-19898890 REVERSE LENGTH=396;; (*ITAG) Solyc12g099450.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64942526-64944096 transcript_region:SL2.40ch12:64942526..64944096+ functional_description:"Genomic DNA chromosome 5 TAC clone K20J1 (AHRD V1 *-*- Q9FH24_ARATH)"; NbS00039174g0001.1 protein AED:0.41 eAED:0.59 QI:0|0|0|1|1|1|2|0|99; (*GB) gi|357470001|ref|XP_003605285.1| (e_value=2e-17) Protein transport protein Sec61 beta subunit [Medicago truncatula];; (*SWP) sp|P38389|SC61B_ARATH (e_value=7e-18) Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1;; (*TAIR) AT3G60540.2 (e_value=1e-19) | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr3:22375132-22375377 REVERSE LENGTH=81; NbS00039174g0008.1 protein AED:0.09 eAED:0.10 QI:8|0.92|0.85|1|0.69|0.85|14|142|333; (*GB) gi|297737456|emb|CBI26657.3| (e_value=2e-159) unnamed protein product [Vitis vinifera];; (*SWP) sp|O43196|MSH5_HUMAN (e_value=3e-34) MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1;; (*TAIR) AT3G20475.1 (e_value=7e-153) | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:7143546-7150811 FORWARD LENGTH=807;; (*ITAG) Solyc10g018530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8636113-8651968 transcript_region:SL2.40ch10:8636113..8651968- go_terms:GO:0003684 functional_description:"DNA mismatch repair protein MutS (AHRD V1 **** D9S3H0_9FIRM); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0003684 NbC25931037g0004.1 protein AED:0.04 eAED:0.05 QI:13|0.66|0.25|0.75|0|0.25|4|0|538; (*GB) gi|297743071|emb|CBI35938.3| (e_value=3e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g119890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62479105-62481531 transcript_region:SL2.40ch03:62479105..62481531+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035001g0013.1 protein AED:0.11 eAED:0.13 QI:25|0.5|0.36|1|0.6|0.45|11|0|704; (*GB) gi|225463881|ref|XP_002263430.1| (e_value=0.0) PREDICTED: ABC transporter G family member 22-like [Vitis vinifera];; (*SWP) sp|Q93YS4|AB22G_ARATH (e_value=0.0) ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1;; (*TAIR) AT5G06530.3 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:1990334-1994605 REVERSE LENGTH=691;; (*ITAG) Solyc04g070970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55373820-55377979 transcript_region:SL2.40ch04:55373820..55377979- go_terms:GO:0017127 functional_description:"ABC transporter G family member 22 (AHRD V1 **** AB22G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017127 NbS00039961g0004.1 protein AED:0.06 eAED:0.07 QI:190|0.92|0.8|1|1|1|15|0|1085; (*GB) gi|356533887|ref|XP_003535489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100779157 [Glycine max];; (*TAIR) AT5G04480.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:1271886-1277793 REVERSE LENGTH=1050;; (*ITAG) Solyc11g007840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2056744-2063954 transcript_region:SL2.40ch11:2056744..2063954+ go_terms:GO:0009058 functional_description:"Glycosyltransferase family protein 1 (AHRD V1 ***- D7M4Y0_ARALY); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00011961g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|122 NbS00011961g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc11g018570.1.1 (e_value=4e-13) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:8739998-8740713 transcript_region:SL2.40ch11:8739998..8740713- functional_description:"Unknown Protein (AHRD V1)"; NbS00029038g0009.1 protein AED:0.28 eAED:0.34 QI:0|0|0|0.8|0.5|0.6|5|0|712; (*GB) gi|255764587|gb|ACU33853.1| (e_value=0.0) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q0WKV3|PPR36_ARATH (e_value=3e-132) Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1;; (*TAIR) AT1G12300.1 (e_value=2e-133) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00029038g0006.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.5|1|1|2|0|87 NbS00029038g0010.1 protein AED:0.54 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|89 NbS00029038g0011.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|64 NbS00050823g0008.1 protein AED:0.17 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.66|3|0|224; (*GB) gi|359472832|ref|XP_002263089.2| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100254361 [Vitis vinifera];; (*TAIR) AT1G69080.1 (e_value=5e-40) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:25972132-25973243 REVERSE LENGTH=223;; (*ITAG) Solyc05g012000.2.1 (e_value=9e-85) genomic_reference:SL2.40ch05 gene_region:5206381-5207806 transcript_region:SL2.40ch05:5206381..5207806- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KWY1_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00015179g0004.1 protein AED:0.05 eAED:0.05 QI:1293|0.8|0.66|1|0.2|0.16|6|0|315; (*GB) gi|225459048|ref|XP_002285633.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100264337 [Vitis vinifera];; (*ITAG) Solyc04g076610.1.1 (e_value=3e-147) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:59092281-59095192 transcript_region:SL2.40ch04:59092281..59095192- go_terms:GO:0003676,GO:0004523,GO:0008270,GO:0005622 functional_description:"Receptor expression-enhancing protein 4 (AHRD V1 *--- REEP4_HUMAN); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0003676,GO:0004523,GO:0008270,GO:0005622 NbS00010382g0017.1 protein AED:0.13 eAED:0.14 QI:0|0|0.33|1|0|0|3|400|826; (*GB) gi|225457865|ref|XP_002279206.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Vitis vinifera];; (*SWP) sp|Q9LRV2|PP256_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g26540 OS=Arabidopsis thaliana GN=PCMP-A5 PE=2 SV=1;; (*TAIR) AT3G26540.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9744542-9746644 REVERSE LENGTH=700;; (*ITAG) Solyc04g063300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54545986-54548082 transcript_region:SL2.40ch04:54545986..54548082+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LR64_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010382g0019.1 protein AED:0.25 eAED:0.25 QI:431|0.9|0.81|1|0.9|0.81|11|0|532; (*GB) gi|255558490|ref|XP_002520270.1| (e_value=0.0) protein transporter, putative [Ricinus communis];; (*SWP) sp|Q5SRX1|TM1L2_MOUSE (e_value=1e-27) TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1;; (*TAIR) AT1G21380.1 (e_value=2e-154) | Symbols: | Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506;; (*ITAG) Solyc04g063280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54521549-54535248 transcript_region:SL2.40ch04:54521549..54535248- go_terms:GO:0006886,GO:0005622 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886,GO:0005622 NbS00010382g0016.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|280; (*GB) gi|357521321|ref|XP_003630949.1| (e_value=9e-153) 40S ribosomal protein S2 [Medicago truncatula];; (*SWP) sp|Q93VB8|RS22_ARATH (e_value=8e-149) 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1;; (*TAIR) AT1G58684.1 (e_value=6e-150) | Symbols: | Ribosomal protein S5 family protein | chr1:21770021-21771217 REVERSE LENGTH=284;; (*ITAG) Solyc04g074300.2.1 (e_value=1e-169) genomic_reference:SL2.40ch04 gene_region:57894185-57896333 transcript_region:SL2.40ch04:57894185..57896333+ go_terms:GO:0003735 functional_description:"30S ribosomal protein S5 (AHRD V1 ***- C5K1T7_AJEDS); contains Interpro domain(s) IPR005711 Ribosomal protein S5, eukaryotic/archaeal "; GO:0003735 NbS00010382g0006.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|225438361|ref|XP_002273988.1| (e_value=0.0) PREDICTED: aspartic proteinase Asp1 [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=8e-103) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT4G33490.2 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:16108781-16110679 REVERSE LENGTH=425;; (*ITAG) Solyc06g018100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:13419008-13422267 transcript_region:SL2.40ch06:13419008..13422267- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00010382g0005.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|359488917|ref|XP_002283393.2| (e_value=2e-69) PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZQA1|PP188_ARATH (e_value=1e-67) Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1;; (*TAIR) AT2G36730.1 (e_value=8e-69) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15405068-15406573 REVERSE LENGTH=501;; (*ITAG) Solyc04g063270.1.1 (e_value=2e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54520061-54521446 transcript_region:SL2.40ch04:54520061..54521446+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ72_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00010382g0024.1 protein AED:0.27 eAED:0.40 QI:0|0|0|1|0|0|3|0|475; (*GB) gi|224082372|ref|XP_002306667.1| (e_value=2e-168) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LP03|PPR73_ARATH (e_value=6e-126) Pentatricopeptide repeat-containing protein At1g43980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E58 PE=2 SV=1;; (*TAIR) AT1G43980.1 (e_value=1e-125) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:16687637-16689502 REVERSE LENGTH=621;; (*ITAG) Solyc04g063340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54565840-54567843 transcript_region:SL2.40ch04:54565840..54567843+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00010382g0101.1 protein AED:0.24 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|173 NbS00010382g0110.1 protein AED:0.19 eAED:0.19 QI:0|1|0.25|1|0.66|0.5|4|0|187 NbS00010382g0104.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|124 NbS00010382g0219.1 protein AED:0.10 eAED:0.10 QI:291|0.87|0.88|1|0.62|0.77|9|202|673 NbS00010382g0205.1 protein AED:0.19 eAED:0.21 QI:334|0.54|0.58|1|0.90|0.83|12|664|733 NbS00010382g0222.1 protein AED:0.30 eAED:0.30 QI:119|1|0.6|1|1|1|5|0|200 NbS00010382g0216.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|76 NbS00010382g0204.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|150 NbS00010382g0224.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0.42|0.71|0.83|0.71|7|0|650 NbS00036789g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|225457397|ref|XP_002284877.1| (e_value=4e-79) PREDICTED: uncharacterized protein LOC100262165 isoform 1 [Vitis vinifera];; (*TAIR) AT3G47490.1 (e_value=2e-70) | Symbols: | HNH endonuclease | chr3:17498337-17500731 FORWARD LENGTH=234;; (*ITAG) Solyc12g036250.1.1 (e_value=2e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30145575-30148205 transcript_region:SL2.40ch12:30145575..30148205- go_terms:GO:0004519 functional_description:"HNH endonuclease domain-containing protein (Fragment) (AHRD V1 *-*- C6F7M2_PSEMZ); contains Interpro domain(s) IPR002711 HNH endonuclease "; GO:0004519 NbS00018591g0005.1 protein AED:0.12 eAED:0.18 QI:0|0.83|0.71|1|1|1|7|0|588; (*GB) gi|225442799|ref|XP_002285259.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242968 [Vitis vinifera];; (*TAIR) AT1G80280.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:30183839-30186141 REVERSE LENGTH=647;; (*ITAG) Solyc03g119990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62556422-62561636 transcript_region:SL2.40ch03:62556422..62561636+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7KX74_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00018591g0008.1 protein AED:0.32 eAED:0.38 QI:0|0.66|0.71|1|1|1|7|0|346; (*GB) gi|224106285|ref|XP_002333702.1| (e_value=1e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XIG8|STRAP_RAT (e_value=4e-73) Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1;; (*TAIR) AT3G15610.1 (e_value=4e-140) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:5291076-5292796 REVERSE LENGTH=341;; (*ITAG) Solyc03g120010.2.1 (e_value=3e-158) genomic_reference:SL2.40ch03 gene_region:62568976-62573796 transcript_region:SL2.40ch03:62568976..62573796- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 **-- B6SSB6_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00033447g0002.1 protein AED:0.46 eAED:0.46 QI:323|0|0.33|0.66|1|1|3|0|104 NbS00033447g0001.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|1|1|3|0|143; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-16) hypothetical protein [Nicotiana tabacum]; NbS00061587g0004.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|0.92|0.92|14|0|620; (*GB) gi|359479709|ref|XP_003632341.1| (e_value=0.0) PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q42777|MCCA_SOYBN (e_value=0.0) Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial OS=Glycine max GN=MCCA PE=1 SV=2;; (*TAIR) AT1G03090.2 (e_value=0.0) | Symbols: MCCA | methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) | chr1:739715-743819 FORWARD LENGTH=734;; (*ITAG) Solyc09g065540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59258116-59272301 transcript_region:SL2.40ch09:59258116..59272301+ go_terms:GO:0004485 functional_description:"Methylcrotonoyl-CoA carboxylase alpha chain (AHRD V1 **** B0RM10_XANCB); contains Interpro domain(s) IPR013816 ATP-grasp fold, subdomain 2 "; GO:0004485 NbS00047811g0001.1 protein AED:0.14 eAED:0.63 QI:376|1|0.5|1|0|0|2|0|587; (*GB) gi|225459022|ref|XP_002285611.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q3EDF8|PPR28_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1;; (*TAIR) AT1G09900.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=598;; (*ITAG) Solyc07g066390.1.1 (e_value=4e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65059324-65061057 transcript_region:SL2.40ch07:65059324..65061057- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVY0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00003462g0014.1 protein AED:0.08 eAED:0.08 QI:84|0.66|0.75|1|0|0.25|4|271|423; (*GB) gi|224125298|ref|XP_002319551.1| (e_value=2e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFU0|DOT3_ARATH (e_value=1e-73) Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1;; (*TAIR) AT5G10250.1 (e_value=1e-74) | Symbols: DOT3 | Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607;; (*ITAG) Solyc01g098820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80989681-80991894 transcript_region:SL2.40ch01:80989681..80991894+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00003462g0013.1 protein AED:0.21 eAED:0.21 QI:273|1|0.75|1|0.66|0.5|4|407|232; (*GB) gi|255542588|ref|XP_002512357.1| (e_value=5e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54850.1 (e_value=9e-56) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20454440-20455994 FORWARD LENGTH=206;; (*ITAG) Solyc01g098810.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:80983941-80987706 transcript_region:SL2.40ch01:80983941..80987706+ functional_description:"Heat shock protein-like protein (AHRD V1 ***- Q84KA6_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00003462g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|357441615|ref|XP_003591085.1| (e_value=7e-26) Heat shock protein-like protein [Medicago truncatula];; (*TAIR) AT1G54850.1 (e_value=4e-22) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20454440-20455994 FORWARD LENGTH=206;; (*ITAG) Solyc01g098790.1.1 (e_value=8e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:80974445-80976074 transcript_region:SL2.40ch01:80974445..80976074+ functional_description:"Heat shock protein-like protein (AHRD V1 *-*- Q84KA7_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00003462g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0|0.66|3|0|333; (*GB) gi|255542582|ref|XP_002512354.1| (e_value=7e-94) cation:cation antiporter, putative [Ricinus communis];; (*SWP) sp|O04034|CCX5_ARATH (e_value=6e-82) Cation/calcium exchanger 5 OS=Arabidopsis thaliana GN=CCX5 PE=2 SV=1;; (*TAIR) AT1G08960.1 (e_value=4e-83) | Symbols: CAX11, ATCAX11 | cation exchanger 11 | chr1:2879698-2881877 FORWARD LENGTH=546;; (*ITAG) Solyc01g098800.2.1 (e_value=8e-130) genomic_reference:SL2.40ch01 gene_region:80976356-80981277 transcript_region:SL2.40ch01:80976356..80981277- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 *-** C5PBJ7_COCP7); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00003462g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.75|1|1|0.75|0.8|5|612|146; (*GB) gi|351725135|ref|NP_001236058.1| (e_value=3e-77) uncharacterized protein LOC100499788 precursor [Glycine max];; (*SWP) sp|Q53YF3|SPC3B_ARATH (e_value=1e-71) Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1;; (*TAIR) AT5G27430.1 (e_value=9e-73) | Symbols: | Signal peptidase subunit | chr5:9687470-9689185 FORWARD LENGTH=167;; (*ITAG) Solyc01g098780.2.1 (e_value=1e-89) genomic_reference:SL2.40ch01 gene_region:80969274-80972870 transcript_region:SL2.40ch01:80969274..80972870- go_terms:GO:0005515,GO:0008233 functional_description:"Signal peptidase complex subunit 3 (AHRD V1 **** B0XD98_CULQU); contains Interpro domain(s) IPR007653 Signal peptidase 22 kDa subunit "; GO:0005515,GO:0008233 NbS00003462g0015.1 protein AED:0.43 eAED:0.85 QI:0|0|0|1|0|0|3|0|119 NbS00032308g0003.1 protein AED:0.04 eAED:0.04 QI:170|1|1|1|1|1|5|702|385; (*GB) gi|225440538|ref|XP_002275792.1| (e_value=4e-78) PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera];; (*TAIR) AT3G54000.1 (e_value=1e-24) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996757-19998197 FORWARD LENGTH=352;; (*ITAG) Solyc09g011690.2.1 (e_value=6e-174) genomic_reference:SL2.40ch09 gene_region:4952573-4954426 transcript_region:SL2.40ch09:4952573..4954426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016604g0001.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|92; (*GB) gi|40557129|gb|AAR87851.1| (e_value=9e-13) fertilization-related kinase 2 [Solanum chacoense]; NbS00016604g0004.1 protein AED:0.27 eAED:0.42 QI:45|0|0|1|0|0|3|0|139; (*GB) gi|40557129|gb|AAR87851.1| (e_value=1e-41) fertilization-related kinase 2 [Solanum chacoense];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=2e-21) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT4G36950.1 (e_value=8e-26) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc06g065750.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37607421-37608140 transcript_region:SL2.40ch06:37607421..37608140+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00019914g0004.1 protein AED:0.11 eAED:0.11 QI:213|1|1|1|0.87|0.88|9|270|363; (*GB) gi|225459415|ref|XP_002285820.1| (e_value=2e-163) PREDICTED: transcription factor TGA4 [Vitis vinifera];; (*SWP) sp|Q39237|TGA1_ARATH (e_value=3e-140) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT5G65210.5 (e_value=2e-141) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g072460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57075743-57078562 transcript_region:SL2.40ch04:57075743..57078562+ go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00019914g0005.1 protein AED:0.00 eAED:0.00 QI:141|1|1|1|0|0|3|355|116; (*GB) gi|224135443|ref|XP_002327219.1| (e_value=4e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LC53|EPF2_ARATH (e_value=4e-31) Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana GN=EPF2 PE=2 SV=1;; (*TAIR) AT1G34245.1 (e_value=3e-32) | Symbols: EPF2 | Putative membrane lipoprotein | chr1:12472990-12473631 FORWARD LENGTH=120;; (*ITAG) Solyc04g072490.2.1 (e_value=2e-48) genomic_reference:SL2.40ch04 gene_region:57089582-57095928 transcript_region:SL2.40ch04:57089582..57095928- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *-*- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00013129g0011.1 protein AED:0.29 eAED:0.30 QI:0|0.92|0.78|1|0.76|0.71|14|0|484; (*GB) gi|225460965|ref|XP_002280015.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253742 [Vitis vinifera];; (*TAIR) AT1G50710.1 (e_value=0.0) | Symbols: | unknown protein; Has 109 Blast hits to 109 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:18784719-18787615 REVERSE LENGTH=423;; (*ITAG) Solyc12g005050.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:22130-27629 transcript_region:SL2.40ch12:22130..27629- functional_description:"HAUS augmin-like complex subunit 4 (AHRD V1 *-*- HAUS4_HUMAN)"; NbS00013129g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0.5|0.66|3|0|675; (*GB) gi|225460985|ref|XP_002280336.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=1e-17) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc12g005010.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00009116g0001.1 protein AED:0.20 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|224134212|ref|XP_002321764.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G61820.1 (e_value=6e-69) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc12g042380.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43016137-43018348 transcript_region:SL2.40ch12:43016137..43018348+ functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00009116g0003.1 protein AED:0.35 eAED:0.61 QI:0|0|0|1|0|0.33|3|0|98; (*GB) gi|356524923|ref|XP_003531077.1| (e_value=4e-18) PREDICTED: uncharacterized protein LOC100803184 [Glycine max];; (*TAIR) AT5G61820.1 (e_value=1e-12) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc12g042380.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43016137-43018348 transcript_region:SL2.40ch12:43016137..43018348+ functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00015761g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|1|1|3|573|596; (*GB) gi|359476425|ref|XP_002263877.2| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q9LPK6|AEE9_ARATH (e_value=0.0) Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1;; (*TAIR) AT1G21540.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:7548758-7550521 REVERSE LENGTH=550;; (*ITAG) Solyc03g031940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8685384-8688719 transcript_region:SL2.40ch03:8685384..8688719- go_terms:GO:0018858,GO:0015645 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858,GO:0015645 NbS00009382g0008.1 protein AED:0.45 eAED:0.50 QI:0|0|0|0.4|0.25|0.6|5|0|365; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-19) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00060579g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|255547409|ref|XP_002514762.1| (e_value=1e-15) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=8e-12) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT3G28917.1 (e_value=2e-15) | Symbols: MIF2 | mini zinc finger 2 | chr3:10925014-10925316 FORWARD LENGTH=100;; (*ITAG) Solyc01g103810.1.1 (e_value=9e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:84104298-84104648 transcript_region:SL2.40ch01:84104298..84104648- functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 *--- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; NbS00006784g0010.1 protein AED:0.07 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|253; (*GB) gi|255569462|ref|XP_002525698.1| (e_value=4e-65) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SRV3|LBD20_ARATH (e_value=3e-55) LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1;; (*TAIR) AT3G03760.1 (e_value=2e-56) | Symbols: LBD20 | LOB domain-containing protein 20 | chr3:943632-944673 FORWARD LENGTH=273;; (*ITAG) Solyc01g098220.1.1 (e_value=2e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80564577-80565953 transcript_region:SL2.40ch01:80564577..80565953- functional_description:"LOB domain protein 20 (AHRD V1 *-*- D7L194_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00006784g0013.1 protein AED:0.23 eAED:0.23 QI:46|0.71|0.66|0.86|0.64|0.8|15|370|485; (*GB) gi|255567254|ref|XP_002524608.1| (e_value=3e-169) mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis];; (*SWP) sp|O35857|TIM44_MOUSE (e_value=5e-17) Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=2 SV=2;; (*TAIR) AT2G20510.1 (e_value=5e-129) | Symbols: ATTIM44-1, TIM44-1 | translocase inner membrane subunit 44-1 | chr2:8836018-8838598 REVERSE LENGTH=472;; (*ITAG) Solyc01g098230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80566796-80574909 transcript_region:SL2.40ch01:80566796..80574909+ go_terms:GO:0015462 functional_description:"Mitochondrial import inner membrane translocase subunit TIM44 (AHRD V1 ***- D7L3P3_ARALY); contains Interpro domain(s) IPR007379 Mitochondrial inner membrane translocase complex, subunit Tim44-related "; GO:0015462 NbS00020813g0002.1 protein AED:0.33 eAED:0.33 QI:0|0.88|0.8|1|0.88|0.9|10|148|401; (*GB) gi|225444069|ref|XP_002264140.1| (e_value=5e-176) PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SUC0|3HIDH_ARATH (e_value=3e-154) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3;; (*TAIR) AT4G20930.1 (e_value=2e-155) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr4:11198627-11201036 REVERSE LENGTH=347;; (*ITAG) Solyc02g022930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15135802-15149888 transcript_region:SL2.40ch02:15135802..15149888- go_terms:GO:0008679 functional_description:"3-hydroxyisobutyrate dehydrogenase-like protein (AHRD V1 ***- Q1ECP8_ARATH); contains Interpro domain(s) IPR011548 3-hydroxyisobutyrate dehydrogenase "; GO:0008679 NbS00022460g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|0.5|0.66|3|0|70 NbS00022460g0009.1 protein AED:0.38 eAED:0.38 QI:0|1|0.4|1|1|0.8|5|0|382; (*GB) gi|225430898|ref|XP_002276037.1| (e_value=0.0) PREDICTED: peptide chain release factor 2 [Vitis vinifera];; (*SWP) sp|P74476|RF2_SYNY3 (e_value=6e-128) Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prfB PE=3 SV=2;; (*TAIR) AT5G36170.2 (e_value=0.0) | Symbols: HCF109, ATPRFB | high chlorophyll fluorescent 109 | chr5:14236083-14237974 REVERSE LENGTH=455;; (*ITAG) Solyc04g025290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:19180778-19194213 transcript_region:SL2.40ch04:19180778..19194213+ go_terms:GO:0005515,GO:0003747 functional_description:"Peptide chain release factor 2 (AHRD V1 **** B6UHD9_MAIZE); contains Interpro domain(s) IPR004374 Peptide chain release factor 2 "; GO:0005515,GO:0003747 NbS00017770g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|57013964|ref|YP_173436.1| (e_value=3e-49) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00017770g0004.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0.14|0.57|1|1|7|0|301; (*GB) gi|297739512|emb|CBI29694.3| (e_value=6e-33) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g103420.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:83786331-83798238 transcript_region:SL2.40ch01:83786331..83798238+ go_terms:GO:0000166 functional_description:"Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3 "; GO:0000166 NbS00046149g0002.1 protein AED:0.36 eAED:0.47 QI:0|0|0|1|1|1|3|0|245; (*GB) gi|356565325|ref|XP_003550892.1| (e_value=2e-79) PREDICTED: MATE efflux family protein DTX1-like [Glycine max];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=3e-15) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT4G22790.1 (e_value=2e-68) | Symbols: | MATE efflux family protein | chr4:11975153-11976628 REVERSE LENGTH=491;; (*ITAG) Solyc08g079730.1.1 (e_value=1e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60384398-60385840 transcript_region:SL2.40ch08:60384398..60385840+ go_terms:GO:0015299,GO:0015559 functional_description:"Mate efflux family protein (AHRD V1 **-- D7ME03_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00015866g0001.1 protein AED:0.27 eAED:0.43 QI:307|0.5|0.33|1|0|0|3|0|92; (*GB) gi|297803650|ref|XP_002869709.1| (e_value=1e-28) zinc ion binding protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=3e-29) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=2e-30) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc04g071860.2.1 (e_value=4e-35) genomic_reference:SL2.40ch04 gene_region:56452439-56466548 transcript_region:SL2.40ch04:56452439..56466548- go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase AKR1 (AHRD V1 *-*- AKR1_CRYNE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00030610g0013.1 protein AED:0.27 eAED:0.27 QI:214|1|0.85|1|0.83|0.71|7|0|285; (*GB) gi|225458007|ref|XP_002276474.1| (e_value=9e-104) PREDICTED: HVA22-like protein i [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=6e-91) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.1 (e_value=5e-92) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015573-17016969 FORWARD LENGTH=296;; (*ITAG) Solyc12g089290.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62852577-62854975 transcript_region:SL2.40ch12:62852577..62854975+ functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 *--- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00030610g0019.1 protein AED:0.26 eAED:0.26 QI:0|0.90|0.86|1|0.90|0.95|23|324|803; (*GB) gi|225457911|ref|XP_002272227.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 35 isoform 1 [Vitis vinifera];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=0.0) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc12g089340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62908141-62919928 transcript_region:SL2.40ch12:62908141..62919928- functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; NbS00030610g0001.1 protein AED:0.26 eAED:0.26 QI:34|1|1|1|1|1|9|545|300; (*GB) gi|255579975|ref|XP_002530822.1| (e_value=2e-178) calcium lipid binding protein, putative [Ricinus communis];; (*SWP) sp|Q5M7N9|ESYT3_XENTR (e_value=5e-22) Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1;; (*TAIR) AT2G20990.1 (e_value=5e-166) | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541;; (*ITAG) Solyc12g089330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62902074-62906234 transcript_region:SL2.40ch12:62902074..62906234- functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00022480g0017.1 protein AED:0.17 eAED:0.17 QI:1444|0.90|0.91|1|0.72|0.58|12|0|408; (*GB) gi|20873461|emb|CAD12373.1| (e_value=0.0) glutamate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9LEC8|DHEB_NICPL (e_value=0.0) Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1;; (*TAIR) AT5G18170.1 (e_value=0.0) | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411;; (*ITAG) Solyc10g078550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59665351-59668393 transcript_region:SL2.40ch10:59665351..59668393- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q8L6A0_TOBAC); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00022480g0013.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|309; (*GB) gi|359482129|ref|XP_002276836.2| (e_value=4e-75) PREDICTED: uncharacterized protein LOC100260668 [Vitis vinifera];; (*SWP) sp|B2G6W4|DNAJ_LACRJ (e_value=9e-17) Chaperone protein DnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G18140.1 (e_value=3e-58) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:5998235-5999699 FORWARD LENGTH=333;; (*ITAG) Solyc10g078560.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59673523-59677019 transcript_region:SL2.40ch10:59673523..59677019- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A2SS06_METLZ); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00022480g0015.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|1|1|4|205|169; (*GB) gi|125534871|gb|EAY81419.1| (e_value=1e-40) hypothetical protein OsI_36586 [Oryza sativa Indica Group];; (*SWP) sp|Q8VZT0|NLAL1_ARATH (e_value=3e-40) Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1;; (*TAIR) AT3G03920.1 (e_value=2e-41) | Symbols: | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | chr3:1009123-1010379 REVERSE LENGTH=202;; (*ITAG) Solyc10g078540.1.1 (e_value=2e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59662818-59664625 transcript_region:SL2.40ch10:59662818..59664625+ go_terms:GO:0031429 functional_description:"H/ACA ribonucleoprotein complex subunit 1-like protein 1 (AHRD V1 *-*- B6TYV7_MAIZE); contains Interpro domain(s) IPR007504 Gar1 protein RNA-binding region "; GO:0031429 NbS00001512g0009.1 protein AED:0.37 eAED:0.49 QI:241|0.33|0.25|0.75|0.66|0.5|4|0|136; (*GB) gi|306448597|gb|ADM88045.1| (e_value=1e-31) CDPK11 [Nicotiana tabacum];; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=2e-32) Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1;; (*TAIR) AT4G35310.1 (e_value=3e-33) | Symbols: CPK5, ATCPK5 | calmodulin-domain protein kinase 5 | chr4:16802436-16804628 FORWARD LENGTH=556;; (*ITAG) Solyc10g074570.1.1 (e_value=2e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57454225-57458658 transcript_region:SL2.40ch10:57454225..57458658+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 6 (AHRD V1 **** B9MZ11_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00001512g0008.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|0|0|5|0|472; (*GB) gi|225465208|ref|XP_002265141.1| (e_value=4e-147) PREDICTED: uncharacterized protein LOC100243774 [Vitis vinifera];; (*TAIR) AT1G57680.2 (e_value=3e-103) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362;; (*ITAG) Solyc01g103200.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:83620668-83621921 transcript_region:SL2.40ch01:83620668..83621921+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001150g0018.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|1|1|3|168|358; (*GB) gi|334683127|emb|CBX87929.1| (e_value=9e-164) equilibrative nucleoside transporter 1 [Solanum tuberosum];; (*SWP) sp|A1L272|S29A4_DANRE (e_value=4e-25) Equilibrative nucleoside transporter 4 OS=Danio rerio GN=slc29a4 PE=2 SV=1;; (*TAIR) AT1G70330.1 (e_value=9e-135) | Symbols: ENT1,AT, ENT1 | equilibrative nucleotide transporter 1 | chr1:26502920-26504360 FORWARD LENGTH=450;; (*ITAG) Solyc01g008020.2.1 (e_value=2e-158) genomic_reference:SL2.40ch01 gene_region:2185118-2189315 transcript_region:SL2.40ch01:2185118..2189315- go_terms:GO:0010174 functional_description:"Equilibrative nucleoside transporter 1 (AHRD V1 **** Q4W6L4_ORYSJ); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0010174 NbS00001150g0020.1 protein AED:0.20 eAED:0.23 QI:80|0.83|0.57|1|0.5|0.42|7|0|316; (*GB) gi|225464525|ref|XP_002270827.1| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100254207 [Vitis vinifera];; (*TAIR) AT5G52440.1 (e_value=4e-47) | Symbols: HCF106 | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:21286896-21288613 FORWARD LENGTH=260;; (*ITAG) Solyc03g025310.2.1 (e_value=1e-117) genomic_reference:SL2.40ch03 gene_region:7131663-7139608 transcript_region:SL2.40ch03:7131663..7139608+ go_terms:GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D4TUR0_9NOST); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0015031,GO:0016021 NbS00001150g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|307; (*GB) gi|255545216|ref|XP_002513669.1| (e_value=3e-55) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G23950.1 (e_value=9e-44) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:8082789-8083448 FORWARD LENGTH=219;; (*ITAG) Solyc03g025340.1.1 (e_value=3e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7153156-7154205 transcript_region:SL2.40ch03:7153156..7154205- functional_description:"C2 domain-containing protein (AHRD V1 *--- Q5DVL6_HORVD); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00001150g0019.1 protein AED:0.21 eAED:0.21 QI:168|1|1|1|1|1|2|108|452; (*GB) gi|7415599|dbj|BAA93453.1| (e_value=0.0) acyltransferase homolog [Petunia x hybrida];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=0.0) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT5G23940.1 (e_value=0.0) | Symbols: EMB3009, PEL3, DCR | HXXXD-type acyl-transferase family protein | chr5:8076616-8079677 REVERSE LENGTH=484;; (*ITAG) Solyc03g025320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7141066-7144134 transcript_region:SL2.40ch03:7141066..7144134- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00008386g0003.1 protein AED:0.19 eAED:0.19 QI:217|0.8|0.66|1|0.8|0.66|6|557|320; (*GB) gi|350536553|ref|NP_001234764.1| (e_value=2e-53) ACI112 protein [Solanum lycopersicum];; (*TAIR) AT3G12320.1 (e_value=2e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:3924034-3925262 FORWARD LENGTH=269;; (*ITAG) Solyc01g096630.2.1 (e_value=4e-56) genomic_reference:SL2.40ch01 gene_region:79450786-79453160 transcript_region:SL2.40ch01:79450786..79453160+ functional_description:"ACI112 (AHRD V1 ***- Q3SC80_SOLLC)"; NbS00002740g0002.1 protein AED:0.43 eAED:0.55 QI:0|0|0|1|0|0|3|0|115; (*GB) gi|225443233|ref|XP_002271149.1| (e_value=9e-21) PREDICTED: uncharacterized protein LOC100256982 [Vitis vinifera];; (*TAIR) AT1G79660.1 (e_value=4e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29976294-29976575 FORWARD LENGTH=93;; (*ITAG) Solyc12g042540.1.1 (e_value=3e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:43333089-43333403 transcript_region:SL2.40ch12:43333089..43333403- functional_description:"Unknown Protein (AHRD V1)"; NbS00051240g0006.1 protein AED:0.09 eAED:0.09 QI:134|0.92|0.92|1|0.80|0.81|27|6|1195; (*GB) gi|296082911|emb|CBI22212.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJL0|SMC4_ARATH (e_value=0.0) Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=2 SV=1;; (*TAIR) AT5G48600.2 (e_value=0.0) | Symbols: SMC3 | structural maintenance of chromosome 3 | chr5:19701908-19709091 FORWARD LENGTH=1244;; (*ITAG) Solyc02g087980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44789160-44798531 transcript_region:SL2.40ch02:44789160..44798531+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes protein 4 (AHRD V1 **-- D8TXU8_VOLCA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00051240g0012.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.8|0.25|0.2|5|0|302; (*GB) gi|16933569|gb|AAL30109.1| (e_value=6e-20) unknown [Solanum phureja x Solanum stenotomum];; (*ITAG) Solyc07g054360.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60036576-60037004 transcript_region:SL2.40ch07:60036576..60037004- functional_description:"Unknown Protein (AHRD V1)"; NbS00012077g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|449; (*GB) gi|225427550|ref|XP_002266461.1| (e_value=1e-139) PREDICTED: probable aspartic protease At2g35615 [Vitis vinifera];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=2e-114) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=1e-129) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc08g005830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:639362-640702 transcript_region:SL2.40ch08:639362..640702+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00012077g0010.1 protein AED:0.11 eAED:0.11 QI:129|0.83|0.85|1|0.83|0.85|7|1214|543; (*GB) gi|225427562|ref|XP_002266662.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera];; (*SWP) sp|P44731|POTD2_HAEIN (e_value=4e-16) Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-A PE=3 SV=2;; (*TAIR) AT1G31410.1 (e_value=0.0) | Symbols: | putrescine-binding periplasmic protein-related | chr1:11247094-11249345 REVERSE LENGTH=524;; (*ITAG) Solyc08g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:646066-655558 transcript_region:SL2.40ch08:646066..655558+ go_terms:GO:0030288 functional_description:"Putrescine-binding periplasmic protein (AHRD V1 *-*- A8FVZ2_SHESH); contains Interpro domain(s) IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein "; GO:0030288 NbS00012077g0011.1 protein AED:0.13 eAED:0.13 QI:440|1|1|1|0.91|0.92|13|239|402; (*GB) gi|296085487|emb|CBI29219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=9e-28) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00012077g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|357487631|ref|XP_003614103.1| (e_value=2e-42) Aspartic proteinase nepenthesin-1 [Medicago truncatula];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=7e-28) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=6e-36) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc08g005830.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:639362-640702 transcript_region:SL2.40ch08:639362..640702+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00010150g0015.1 protein AED:0.26 eAED:0.28 QI:0|0|0|0.57|0.5|0.42|7|0|272; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-14) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00010150g0011.1 protein AED:0.09 eAED:0.10 QI:0|0.33|0.5|1|1|1|4|0|755; (*GB) gi|225464091|ref|XP_002269380.1| (e_value=0.0) PREDICTED: root phototropism protein 3 [Vitis vinifera];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=0.0) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT5G64330.1 (e_value=0.0) | Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746;; (*ITAG) Solyc01g105680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85527440-85530485 transcript_region:SL2.40ch01:85527440..85530485+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00010150g0003.1 protein AED:0.26 eAED:0.26 QI:38|0.66|0.75|1|1|1|4|141|317; (*GB) gi|224141201|ref|XP_002323963.1| (e_value=8e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|D4N500|DIOX1_PAPSO (e_value=5e-45) Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1;; (*TAIR) AT4G10490.1 (e_value=8e-50) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6483900-6485179 FORWARD LENGTH=348;; (*ITAG) Solyc01g105650.2.1 (e_value=1e-137) genomic_reference:SL2.40ch01 gene_region:85512689-85514504 transcript_region:SL2.40ch01:85512689..85514504+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00010150g0017.1 protein AED:0.32 eAED:0.33 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|486; (*GB) gi|118486595|gb|ABK95136.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8W490|PEPK2_ARATH (e_value=5e-169) Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1;; (*TAIR) AT1G12680.1 (e_value=4e-170) | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase-related kinase 2 | chr1:4320123-4322269 REVERSE LENGTH=470;; (*ITAG) Solyc01g105670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85521003-85525251 transcript_region:SL2.40ch01:85521003..85525251+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** B6UA37_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00010150g0019.1 protein AED:0.45 eAED:0.49 QI:0|0|0|0.66|0|0|3|0|112; (*GB) gi|224096103|ref|XP_002334715.1| (e_value=1e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|P51091|LDOX_MALDO (e_value=1e-14) Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1;; (*TAIR) AT4G10500.1 (e_value=9e-17) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6491089-6492342 FORWARD LENGTH=349;; (*ITAG) Solyc08g006770.2.1 (e_value=5e-39) genomic_reference:SL2.40ch08 gene_region:1336526-1338769 transcript_region:SL2.40ch08:1336526..1338769- go_terms:GO:0045431 functional_description:"Anthocyanidin synthase (Fragment) (AHRD V1 **-* P93120_DIACA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00003524g0006.1 protein AED:0.20 eAED:0.21 QI:0|0.6|0.72|1|0.6|0.72|11|0|457; (*GB) gi|350537931|ref|NP_001234318.1| (e_value=0.0) root-specific metal transporter [Solanum lycopersicum];; (*SWP) sp|Q8H4H5|NRAM5_ORYSJ (e_value=1e-149) Metal transporter Nramp5 OS=Oryza sativa subsp. japonica GN=NRAMP5 PE=2 SV=1;; (*TAIR) AT1G15960.1 (e_value=2e-140) | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter 6 | chr1:5482202-5485066 REVERSE LENGTH=527;; (*ITAG) Solyc11g018530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8641837-8646829 transcript_region:SL2.40ch11:8641837..8646829- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00051737g0004.1 protein AED:0.00 eAED:0.00 QI:151|1|1|1|1|1|2|410|284; (*GB) gi|330368849|gb|AEC11889.1| (e_value=3e-152) MYB transcription factor ODO1 [Petunia axillaris];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=1e-152) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT4G22680.1 (e_value=2e-89) | Symbols: MYB85, AtMYB85 | myb domain protein 85 | chr4:11922789-11924080 REVERSE LENGTH=266;; (*ITAG) Solyc08g079270.2.1 (e_value=2e-147) genomic_reference:SL2.40ch08 gene_region:60045419-60047650 transcript_region:SL2.40ch08:60045419..60047650+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 ***- Q6R075_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00016942g0013.1 protein AED:0.09 eAED:0.09 QI:39|1|0.5|1|0|0|2|0|34 NbS00016942g0001.1 protein AED:0.18 eAED:0.27 QI:301|0|0.5|1|0|0.5|2|0|197 NbS00016942g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|95 NbS00011875g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|442; (*GB) gi|225452564|ref|XP_002280597.1| (e_value=3e-158) PREDICTED: U-box domain-containing protein 40 [Vitis vinifera];; (*SWP) sp|Q9FL17|PUB40_ARATH (e_value=1e-131) U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2;; (*TAIR) AT5G40140.1 (e_value=1e-132) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr5:16057347-16058999 FORWARD LENGTH=550;; (*ITAG) Solyc02g087200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44246109-44247554 transcript_region:SL2.40ch02:44246109..44247554- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 40 (AHRD V1 **-- PUB40_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00009310g0014.1 protein AED:0.29 eAED:0.29 QI:306|0.83|0.71|1|0.66|0.57|7|0|352; (*GB) gi|113205376|gb|AAU93592.2| (e_value=0.0) uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum];; (*TAIR) AT2G46420.2 (e_value=7e-168) | Symbols: | Plant protein 1589 of unknown function | chr2:19054891-19056645 FORWARD LENGTH=345;; (*ITAG) Solyc01g010520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5540492-5544218 transcript_region:SL2.40ch01:5540492..5544218+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 ***- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00009310g0012.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|1|1|2|0|192; (*GB) gi|53793731|gb|AAU93594.1| (e_value=6e-118) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=1e-113) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=8e-115) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=1e-120) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00009310g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|1|1|3|0|262; (*GB) gi|225448079|ref|XP_002273560.1| (e_value=6e-113) PREDICTED: uncharacterized protein LOC100256690 [Vitis vinifera];; (*TAIR) AT2G02880.1 (e_value=1e-99) | Symbols: | mucin-related | chr2:841303-843151 FORWARD LENGTH=314;; (*ITAG) Solyc01g010570.2.1 (e_value=2e-158) genomic_reference:SL2.40ch01 gene_region:5581068-5585872 transcript_region:SL2.40ch01:5581068..5585872- functional_description:"Mucin-like protein (Fragment) (AHRD V1 ***- B0FSK5_9MAGN)"; NbS00022920g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|4|0|223; (*ITAG) Solyc12g062880.1.1 (e_value=7e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00056253g0001.1 protein AED:0.64 eAED:0.64 QI:0|0|0|1|1|1|2|0|59 NbS00062096g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|79; (*ITAG) Solyc07g032700.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00035070g0002.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|247; (*GB) gi|147854933|emb|CAN80273.1| (e_value=4e-74) hypothetical protein VITISV_039443 [Vitis vinifera];; (*TAIR) AT1G74940.1 (e_value=4e-33) | Symbols: | Protein of unknown function (DUF581) | chr1:28146284-28147065 FORWARD LENGTH=222;; (*ITAG) Solyc07g042190.2.1 (e_value=2e-121) genomic_reference:SL2.40ch07 gene_region:52541153-52542481 transcript_region:SL2.40ch07:52541153..52542481- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00004056g0004.1 protein AED:0.68 eAED:0.93 QI:0|0|0|0.5|1|1|4|0|60 NbS00004056g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|433; (*ITAG) Solyc10g008920.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:2937341-2938642 transcript_region:SL2.40ch10:2937341..2938642+ go_terms:GO:0003676 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00004056g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|92|198; (*GB) gi|225443584|ref|XP_002278515.1| (e_value=3e-36) PREDICTED: glutaredoxin-C9-like [Vitis vinifera];; (*SWP) sp|Q9SGP6|GRXC9_ARATH (e_value=5e-29) Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1;; (*TAIR) AT1G28480.1 (e_value=4e-30) | Symbols: GRX480, roxy19 | Thioredoxin superfamily protein | chr1:10013634-10014047 REVERSE LENGTH=137;; (*ITAG) Solyc10g008930.1.1 (e_value=7e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2950728-2951111 transcript_region:SL2.40ch10:2950728..2951111+ go_terms:GO:0005515 functional_description:"Glutaredoxin (AHRD V1 ***- B9H2P7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0005515 NbS00006621g0004.1 protein AED:0.10 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|331; (*GB) gi|255560971|ref|XP_002521498.1| (e_value=3e-130) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9MA17|SMB_ARATH (e_value=1e-97) Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1;; (*TAIR) AT1G79580.3 (e_value=8e-99) | Symbols: SMB | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:29941020-29942925 REVERSE LENGTH=371;; (*ITAG) Solyc12g017400.1.1 (e_value=3e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6650295-6652079 transcript_region:SL2.40ch12:6650295..6652079- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HYE4_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00020415g0010.1 protein AED:0.07 eAED:0.10 QI:0|0|0|0.8|0.25|0.2|5|0|772; (*GB) gi|359490850|ref|XP_002269539.2| (e_value=0.0) PREDICTED: ABC transporter B family member 19-like [Vitis vinifera];; (*SWP) sp|Q9SYI3|AB5B_ARATH (e_value=9e-135) ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1;; (*TAIR) AT4G01830.1 (e_value=7e-136) | Symbols: PGP5 | P-glycoprotein 5 | chr4:785683-790447 REVERSE LENGTH=1230;; (*ITAG) Solyc06g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00020415g0009.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|636; (*GB) gi|225455149|ref|XP_002269623.1| (e_value=3e-170) PREDICTED: uncharacterized protein LOC100245198 [Vitis vinifera];; (*TAIR) AT3G49590.1 (e_value=2e-62) | Symbols: | Autophagy-related protein 13 | chr3:18377892-18380104 FORWARD LENGTH=603;; (*ITAG) Solyc03g096790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52577946-52584548 transcript_region:SL2.40ch03:52577946..52584548+ functional_description:"Autophagy-related protein 13 (AHRD V1 *-*- C1GRW0_PARBA); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 "; NbS00029988g0007.1 protein AED:0.34 eAED:0.36 QI:0|0.5|0.46|1|0.57|0.6|15|0|544; (*GB) gi|255573685|ref|XP_002527764.1| (e_value=1e-115) eukaryotic translation initiation factor 2c, putative [Ricinus communis];; (*SWP) sp|Q9SDG8|AGO4A_ORYSJ (e_value=3e-116) Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1;; (*TAIR) AT2G27040.2 (e_value=2e-112) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc01g096750.1.1 (e_value=5e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79536216-79540867 transcript_region:SL2.40ch01:79536216..79540867+ go_terms:GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00029988g0008.1 protein AED:0.24 eAED:0.24 QI:69|1|1|1|0.75|0.6|5|249|203; (*GB) gi|45935111|gb|AAS79569.1| (e_value=1e-59) hypothetical protein [Ipomoea trifida];; (*TAIR) AT5G27990.1 (e_value=8e-29) | Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr5:10017358-10018265 FORWARD LENGTH=184;; (*ITAG) Solyc01g096760.2.1 (e_value=4e-80) genomic_reference:SL2.40ch01 gene_region:79542130-79546287 transcript_region:SL2.40ch01:79542130..79546287- functional_description:"Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region "; NbS00017250g0003.1 protein AED:0.37 eAED:0.52 QI:0|0|0|0.6|1|1|5|0|173; (*GB) gi|255583051|ref|XP_002532293.1| (e_value=3e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g054530.1.1 (e_value=4e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63579675-63580580 transcript_region:SL2.40ch05:63579675..63580580- functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 *-*- Q9LTJ3_ARATH)"; NbS00017250g0007.1 protein AED:0.20 eAED:0.20 QI:250|1|0.90|1|0.8|0.90|11|346|371; (*GB) gi|37787343|gb|AAP50511.1| (e_value=0.0) geranylgeranyltransferase type I beta subunit [Catharanthus roseus];; (*SWP) sp|P53610|PGTB1_RAT (e_value=2e-82) Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1;; (*TAIR) AT2G39550.1 (e_value=2e-155) | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375;; (*ITAG) Solyc05g054520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63571270-63577255 transcript_region:SL2.40ch05:63571270..63577255+ go_terms:GO:0004662 functional_description:"Geranylgeranyl transferase type i beta subunit (AHRD V1 ***- Q17K57_AEDAE); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0004662 NbS00012699g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|74|582; (*GB) gi|255547305|ref|XP_002514710.1| (e_value=3e-81) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g115620.1.1 (e_value=1e-176) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59325445-59327547 transcript_region:SL2.40ch03:59325445..59327547- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00000229g0025.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|669; (*GB) gi|359491530|ref|XP_002279127.2| (e_value=0.0) PREDICTED: probable inactive receptor kinase At1g48480-like [Vitis vinifera];; (*SWP) sp|Q9LP77|Y1848_ARATH (e_value=0.0) Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1;; (*TAIR) AT1G48480.1 (e_value=0.0) | Symbols: RKL1 | receptor-like kinase 1 | chr1:17918475-17920743 FORWARD LENGTH=655;; (*ITAG) Solyc03g118510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61406457-61409311 transcript_region:SL2.40ch03:61406457..61409311+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00000229g0029.1 protein AED:0.22 eAED:0.22 QI:0|1|0.8|1|0.75|0.6|5|0|263; (*GB) gi|147834515|emb|CAN72000.1| (e_value=6e-63) hypothetical protein VITISV_032712 [Vitis vinifera];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=1e-59) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=7e-61) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc03g118470.2.1 (e_value=4e-144) genomic_reference:SL2.40ch03 gene_region:61383765-61385574 transcript_region:SL2.40ch03:61383765..61385574+ go_terms:GO:0008486 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase 1 (AHRD V1 *-** C1BIE3_ONCMY); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00000229g0030.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.8|0.72|11|111|534; (*GB) gi|297734356|emb|CBI15603.3| (e_value=7e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=1e-89) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT3G17830.1 (e_value=2e-138) | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr3:6101868-6104503 FORWARD LENGTH=517;; (*ITAG) Solyc03g118500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61395124-61401321 transcript_region:SL2.40ch03:61395124..61401321+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00000229g0003.1 protein AED:0.22 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|169; (*GB) gi|2894109|emb|CAA05365.1| (e_value=1e-15) high mobility group protein [Solanum tuberosum];; (*SWP) sp|P93047|HMGB3_ARATH (e_value=7e-15) High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3 PE=1 SV=1;; (*TAIR) AT1G20696.3 (e_value=4e-16) | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181170 FORWARD LENGTH=140;; (*ITAG) Solyc03g118480.2.1 (e_value=1e-21) genomic_reference:SL2.40ch03 gene_region:61389287-61391627 transcript_region:SL2.40ch03:61389287..61391627+ functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- A2AR40_MOUSE); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00000229g0007.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|225432810|ref|XP_002283562.1| (e_value=2e-35) PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like [Vitis vinifera];; (*SWP) sp|Q9FG85|PP415_ARATH (e_value=2e-28) Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1;; (*TAIR) AT5G43790.1 (e_value=2e-29) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17592099-17593481 REVERSE LENGTH=460;; (*ITAG) Solyc08g014100.1.1 (e_value=1e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3631169-3632977 transcript_region:SL2.40ch08:3631169..3632977- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000229g0009.1 protein AED:0.30 eAED:0.32 QI:0|0|0|0.66|1|1|3|0|271; (*GB) gi|47824946|gb|AAT38720.1| (e_value=4e-33) Putative F-Box protein, identical [Solanum demissum];; (*ITAG) Solyc09g083230.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64287968-64289113 transcript_region:SL2.40ch09:64287968..64289113+ functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000229g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.62|0.11|0.77|0.87|0.77|9|1067|247; (*GB) gi|224121136|ref|XP_002318507.1| (e_value=4e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q552E9|PKGA_DICDI (e_value=2e-45) Probable serine/threonine-protein kinase pkgA OS=Dictyostelium discoideum GN=pkgA PE=3 SV=1;; (*TAIR) AT3G17850.1 (e_value=8e-93) | Symbols: | Protein kinase superfamily protein | chr3:6109854-6116245 REVERSE LENGTH=1296;; (*ITAG) Solyc03g118530.2.1 (e_value=6e-132) genomic_reference:SL2.40ch03 gene_region:61454465-61471971 transcript_region:SL2.40ch03:61454465..61471971- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000229g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|77; (*ITAG) Solyc03g118450.1.1 (e_value=8e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:61377770-61377991 transcript_region:SL2.40ch03:61377770..61377991- functional_description:"Unknown Protein (AHRD V1)"; NbS00000229g0008.1 protein AED:0.36 eAED:0.60 QI:0|0|0.5|1|1|1|2|246|97; (*ITAG) Solyc12g005010.1.1 (e_value=1e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00054631g0001.1 protein AED:0.33 eAED:0.34 QI:0|0.5|0.66|1|0|0.33|3|555|161; (*GB) gi|224110104|ref|XP_002315417.1| (e_value=9e-79) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52060.2 (e_value=3e-76) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:19310987-19312027 REVERSE LENGTH=346;; (*ITAG) Solyc11g071850.1.1 (e_value=3e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52283425-52284495 transcript_region:SL2.40ch11:52283425..52284495+ functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00058832g0006.1 protein AED:0.16 eAED:0.17 QI:648|1|0.66|1|1|1|3|0|339; (*GB) gi|147859636|emb|CAN83117.1| (e_value=7e-57) hypothetical protein VITISV_017709 [Vitis vinifera];; (*SWP) sp|O80741|FB351_ARATH (e_value=1e-21) Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At1g60180 PE=4 SV=1;; (*TAIR) AT5G02700.1 (e_value=2e-20) | Symbols: | F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456;; (*ITAG) Solyc02g079080.1.1 (e_value=4e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38285862-38289088 transcript_region:SL2.40ch02:38285862..38289088+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00058832g0007.1 protein AED:0.05 eAED:0.06 QI:115|1|0.83|1|0.6|0.83|6|0|451; (*GB) gi|224115074|ref|XP_002316933.1| (e_value=8e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19960.1 (e_value=2e-41) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc02g079070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38278206-38280382 transcript_region:SL2.40ch02:38278206..38280382+ functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00054837g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|138; (*GB) gi|224086970|ref|XP_002308021.1| (e_value=4e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41660.1 (e_value=3e-50) | Symbols: MIZ1 | Protein of unknown function, DUF617 | chr2:17367945-17368838 FORWARD LENGTH=297;; (*ITAG) Solyc04g016060.1.1 (e_value=9e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:6734758-6735603 transcript_region:SL2.40ch04:6734758..6735603- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00014502g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.6|1|1|0.8|5|0|335; (*GB) gi|225425110|ref|XP_002272919.1| (e_value=1e-74) PREDICTED: TIMELESS-interacting protein [Vitis vinifera];; (*SWP) sp|Q5F416|TIPIN_CHICK (e_value=5e-16) TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1;; (*TAIR) AT3G02820.1 (e_value=3e-67) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:611573-613294 FORWARD LENGTH=282;; (*ITAG) Solyc04g008600.2.1 (e_value=1e-132) genomic_reference:SL2.40ch04 gene_region:2202430-2209479 transcript_region:SL2.40ch04:2202430..2209479+ go_terms:GO:0005634,GO:0008270 functional_description:"Chromosome segregation in meiosis protein 3 (AHRD V1 *--- C0NYU8_AJECG); contains Interpro domain(s) IPR012923 Replication fork protection component Swi3 "; GO:0005634,GO:0008270 NbS00014502g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.75|4|0|298; (*GB) gi|400750|sp|Q02200.1|PERX_NICSY (e_value=3e-137) RecName: Full=Lignin-forming anionic peroxidase; Flags: Precursor;; (*SWP) sp|Q02200|PERX_NICSY (e_value=1e-138) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=1e-116) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=8e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00027134g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|374; (*GB) gi|384038819|gb|AFH58000.1| (e_value=0.0) chloroplast PsbO4 precursor [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=0.0) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g090030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46276521-46278207 transcript_region:SL2.40ch02:46276521..46278207- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266 NbS00015861g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.4|1|1|1|5|0|425; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=0.0) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT3G10890.1 (e_value=3e-147) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:3407455-3409000 REVERSE LENGTH=414;; (*ITAG) Solyc00g231680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00015861g0013.1 protein AED:0.13 eAED:0.14 QI:0|0.7|0.54|1|0.6|0.63|11|0|1540; (*GB) gi|357467443|ref|XP_003604006.1| (e_value=0.0) Flavonol synthase/flavanone 3-hydroxylase [Medicago truncatula];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=0.0) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46217108-46227554 transcript_region:SL2.40ch11:46217108..46227554+ go_terms:GO:0005634,GO:0008270 functional_description:"Novel protein containing a PHD-finger domain (Fragment) (AHRD V1 *--- Q07G27_XENTR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00015861g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.6|0.33|1|0.6|0.5|6|0|403; (*GB) gi|350539916|ref|NP_001234575.1| (e_value=0.0) mannan endo-1,4-beta-mannosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O48540|MAN1_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT5G66460.1 (e_value=2e-115) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc00g231680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00024950g0006.1 protein AED:0.06 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|919; (*GB) gi|147841219|emb|CAN62096.1| (e_value=0.0) hypothetical protein VITISV_011181 [Vitis vinifera];; (*TAIR) AT5G51800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:21048317-21051906 FORWARD LENGTH=972;; (*ITAG) Solyc03g006900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1440454-1443745 transcript_region:SL2.40ch03:1440454..1443745+ functional_description:"Crinkler (CRN) family protein (AHRD V1 *-*- D0NJ10_PHYIN); contains Interpro domain(s) IPR011009 Protein kinase-like "; NbS00024950g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|225455635|ref|XP_002271423.1| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100241288 [Vitis vinifera];; (*TAIR) AT5G51800.1 (e_value=6e-27) | Symbols: | Protein kinase superfamily protein | chr5:21048317-21051906 FORWARD LENGTH=972;; (*ITAG) Solyc03g006900.1.1 (e_value=3e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1440454-1443745 transcript_region:SL2.40ch03:1440454..1443745+ functional_description:"Crinkler (CRN) family protein (AHRD V1 *-*- D0NJ10_PHYIN); contains Interpro domain(s) IPR011009 Protein kinase-like "; NbS00009411g0007.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|4|0|159 NbS00009411g0002.1 protein AED:0.22 eAED:0.23 QI:803|1|0.5|1|0|0.5|2|0|293; (*GB) gi|255579529|ref|XP_002530607.1| (e_value=2e-110) nuclear protein skip, putative [Ricinus communis];; (*SWP) sp|Q13573|SNW1_HUMAN (e_value=2e-44) SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1;; (*TAIR) AT1G77180.3 (e_value=2e-95) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=511;; (*ITAG) Solyc11g017220.1.1 (e_value=6e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8031719-8032975 transcript_region:SL2.40ch11:8031719..8032975+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00009411g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|255579527|ref|XP_002530606.1| (e_value=3e-102) nuclear protein skip, putative [Ricinus communis];; (*SWP) sp|P39736|BX42_DROME (e_value=4e-39) Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1 SV=1;; (*TAIR) AT1G77180.2 (e_value=4e-78) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613;; (*ITAG) Solyc12g008370.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00009411g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|225445114|ref|XP_002283815.1| (e_value=8e-15) PREDICTED: uncharacterized protein LOC100266427 [Vitis vinifera];; (*ITAG) Solyc12g008380.1.1 (e_value=5e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1810753-1811406 transcript_region:SL2.40ch12:1810753..1811406+ functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00060547g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|109; (*GB) gi|225453913|ref|XP_002279334.1| (e_value=3e-51) PREDICTED: protein cornichon homolog 4 [Vitis vinifera];; (*SWP) sp|Q3EDD7|CNIH2_ARATH (e_value=3e-48) Probable protein cornichon homolog 2 OS=Arabidopsis thaliana GN=At1g12340 PE=2 SV=2;; (*TAIR) AT1G12340.1 (e_value=2e-49) | Symbols: | Cornichon family protein | chr1:4197396-4198032 FORWARD LENGTH=129;; (*ITAG) Solyc05g051030.2.1 (e_value=1e-71) genomic_reference:SL2.40ch05 gene_region:60365819-60371552 transcript_region:SL2.40ch05:60365819..60371552+ go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00007616g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|350536739|ref|NP_001234774.1| (e_value=1e-49) subtilisin-like protease precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-22) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=3e-30) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084320.1.1 (e_value=4e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00007616g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|0.66|0.5|0.66|3|0|603; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=3e-113) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=2e-114) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc10g084290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63229724-63232951 transcript_region:SL2.40ch10:63229724..63232951+ functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00007616g0012.1 protein AED:0.17 eAED:0.17 QI:161|1|0.83|1|0.6|0.5|6|0|486; (*GB) gi|225439898|ref|XP_002279479.1| (e_value=3e-132) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=7e-67) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=6e-95) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc10g084280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63223672-63226246 transcript_region:SL2.40ch10:63223672..63226246+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 *--* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00007616g0013.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|0|0|5|0|498; (*GB) gi|169674674|gb|ACA64703.1| (e_value=4e-155) subtilase [Nicotiana tabacum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=4e-58) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT5G67090.1 (e_value=4e-75) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00052770g0005.1 protein AED:0.13 eAED:0.13 QI:81|1|0.88|1|0.87|0.77|9|0|457; (*GB) gi|212275011|ref|NP_001130417.1| (e_value=0.0) uncharacterized protein LOC100191513 [Zea mays];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=6e-142) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT1G21400.1 (e_value=0.0) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472;; (*ITAG) Solyc04g063350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54581013-54588153 transcript_region:SL2.40ch04:54581013..54588153+ go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbS00036919g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|359497463|ref|XP_003635527.1| (e_value=4e-56) PREDICTED: uncharacterized protein LOC100853658 [Vitis vinifera];; (*TAIR) AT4G12340.1 (e_value=4e-33) | Symbols: | copper ion binding | chr4:7321492-7322004 REVERSE LENGTH=170;; (*ITAG) Solyc11g065270.1.1 (e_value=4e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47744805-47745338 transcript_region:SL2.40ch11:47744805..47745338+ go_terms:GO:0005507 functional_description:"CHCH domain containing protein (AHRD V1 ***- B6T5B2_MAIZE)"; GO:0005507 NbS00057276g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.5|0.5|1|1|4|178|153; (*GB) gi|707001|gb|AAB33256.1| (e_value=2e-65) Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum];; (*TAIR) AT5G40510.1 (e_value=7e-23) | Symbols: | Sucrase/ferredoxin-like family protein | chr5:16229277-16230798 FORWARD LENGTH=333;; (*ITAG) Solyc02g093370.2.1 (e_value=6e-66) genomic_reference:SL2.40ch02 gene_region:48835447-48841769 transcript_region:SL2.40ch02:48835447..48841769+ functional_description:"Sucrose cleavage protein-like (AHRD V1 **-- Q9LT55_ARATH); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00007557g0009.1 protein AED:0.01 eAED:0.01 QI:73|1|0.66|1|1|1|3|0|203; (*GB) gi|226713184|sp|A7R385.1|CSPLC_VITVI (e_value=3e-92) RecName: Full=CASP-like protein GSVIVT00013502001;; (*SWP) sp|A7R385|CSPLC_VITVI (e_value=9e-94) CASP-like protein GSVIVT00013502001 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1;; (*TAIR) AT2G35760.1 (e_value=2e-73) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201;; (*ITAG) Solyc11g012590.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5386531-5389561 transcript_region:SL2.40ch11:5386531..5389561+ functional_description:"UPF0497 membrane protein 12 (AHRD V1 ***- U497C_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00007557g0008.1 protein AED:0.37 eAED:0.38 QI:0|0|0.5|1|1|0.5|2|0|173; (*GB) gi|53793731|gb|AAU93594.1| (e_value=3e-104) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=2e-99) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=1e-100) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=5e-107) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00010285g0013.1 protein AED:0.18 eAED:0.24 QI:7|0.28|0|1|0.28|0.37|8|0|669; (*GB) gi|86212377|gb|ABC87761.1| (e_value=0.0) JAR1-like protein [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00010285g0012.1 protein AED:0.13 eAED:0.13 QI:42|0.28|0.25|1|0.28|0.37|8|0|617; (*GB) gi|86212377|gb|ABC87761.1| (e_value=0.0) JAR1-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SKE2|JAR1_ARATH (e_value=0.0) Jasmonic acid-amido synthetase JAR1 OS=Arabidopsis thaliana GN=JAR1 PE=1 SV=2;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00011565g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|681; (*GB) gi|225463008|ref|XP_002264906.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4 [Vitis vinifera];; (*SWP) sp|A5D7E2|TM9S4_BOVIN (e_value=6e-135) Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2;; (*TAIR) AT5G35160.2 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658;; (*ITAG) Solyc06g065830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37652162-37654282 transcript_region:SL2.40ch06:37652162..37654282- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 ***- B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00011565g0011.1 protein AED:0.24 eAED:0.26 QI:0|0|0|0.4|0.75|0.6|5|0|359; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-37) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094740.1.1 (e_value=8e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011565g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.7|1|1|0.9|10|0|1198; (*GB) gi|359475856|ref|XP_003631763.1| (e_value=0.0) PREDICTED: trafficking protein particle complex subunit 9-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q32PH0|TPPC9_BOVIN (e_value=1e-34) Trafficking protein particle complex subunit 9 OS=Bos taurus GN=TRAPPC9 PE=2 SV=1;; (*TAIR) AT5G11040.1 (e_value=0.0) | Symbols: TRS120, AtTRS120 | TRS120 | chr5:3495332-3500610 FORWARD LENGTH=1186;; (*ITAG) Solyc06g065840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37655591-37669694 transcript_region:SL2.40ch06:37655591..37669694+ functional_description:"Trafficking protein particle complex subunit 9 (AHRD V1 **-- TPPC9_BOVIN); contains Interpro domain(s) IPR013935 Transport protein Trs120 "; NbS00011565g0106.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|73|140 NbS00011565g0101.1 protein AED:0.35 eAED:0.35 QI:311|1|1|1|1|1|2|543|91 NbS00039283g0005.1 protein AED:0.17 eAED:0.50 QI:163|0|0.5|1|1|1|2|0|138; (*GB) gi|224108133|ref|XP_002314732.1| (e_value=5e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VR4|ML423_ARATH (e_value=8e-51) MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=1 SV=1;; (*TAIR) AT1G24020.2 (e_value=6e-52) | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155;; (*ITAG) Solyc05g046150.2.1 (e_value=1e-17) genomic_reference:SL2.40ch05 gene_region:57493121-57494079 transcript_region:SL2.40ch05:57493121..57494079- go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00039283g0008.1 protein AED:0.19 eAED:0.19 QI:87|0.5|1|1|0.5|0.66|3|155|164; (*GB) gi|225459459|ref|XP_002285833.1| (e_value=2e-53) PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera];; (*SWP) sp|P42732|RR13_ARATH (e_value=2e-48) 30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1;; (*TAIR) AT5G14320.1 (e_value=2e-49) | Symbols: | Ribosomal protein S13/S18 family | chr5:4617839-4618772 REVERSE LENGTH=169;; (*ITAG) Solyc05g005880.2.1 (e_value=7e-65) genomic_reference:SL2.40ch05 gene_region:683410-685491 transcript_region:SL2.40ch05:683410..685491+ go_terms:GO:0003676,GO:0005840 functional_description:"30S ribosomal protein S13 (AHRD V1 ***- B6TG65_MAIZE); contains Interpro domain(s) IPR019980 Ribosomal protein S13, bacterial-type "; GO:0003676,GO:0005840 NbS00009661g0012.1 protein AED:0.13 eAED:0.13 QI:142|1|1|1|0|1|2|401|187; (*GB) gi|225449989|ref|XP_002273592.1| (e_value=2e-102) PREDICTED: N-alpha-acetyltransferase 11 [Vitis vinifera];; (*SWP) sp|Q3UX61|NAA11_MOUSE (e_value=6e-72) N-alpha-acetyltransferase 11 OS=Mus musculus GN=Naa11 PE=2 SV=1;; (*TAIR) AT5G13780.1 (e_value=4e-99) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:4447610-4448603 REVERSE LENGTH=192;; (*ITAG) Solyc01g087900.2.1 (e_value=2e-108) genomic_reference:SL2.40ch01 gene_region:74528983-74532682 transcript_region:SL2.40ch01:74528983..74532682- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 20, NatB catalytic subunit (AHRD V1 **** NAA20_DICDI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00009661g0007.1 protein AED:0.13 eAED:0.14 QI:859|0.83|0.85|1|0.66|0.71|7|234|212; (*GB) gi|359487229|ref|XP_003633539.1| (e_value=3e-83) PREDICTED: serine carboxypeptidase-like 40-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q0WRX3|SCP40_ARATH (e_value=2e-73) Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=1e-74) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g087970.2.1 (e_value=1e-115) genomic_reference:SL2.40ch01 gene_region:74571808-74577944 transcript_region:SL2.40ch01:74571808..74577944- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00009661g0011.1 protein AED:0.26 eAED:0.29 QI:67|0.57|0.5|1|0.42|0.5|8|0|362; (*GB) gi|297736340|emb|CBI24978.3| (e_value=6e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV01|FBW4_ARATH (e_value=4e-60) F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2;; (*TAIR) AT3G52030.2 (e_value=2e-82) | Symbols: | F-box family protein with WD40/YVTN repeat doamin | chr3:19301872-19304227 FORWARD LENGTH=433;; (*ITAG) Solyc01g087910.2.1 (e_value=5e-161) genomic_reference:SL2.40ch01 gene_region:74533038-74542961 transcript_region:SL2.40ch01:74533038..74542961- functional_description:"F-box/WD-40 repeat-containing protein At3g52030 (AHRD V1 ***- FBW4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00056148g0001.1 protein AED:0.08 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|62733645|gb|AAX95761.1| (e_value=6e-26) SRF-type transcription factor family protein [Solanum lycopersicum];; (*ITAG) Solyc06g071300.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:40268226-40268618 transcript_region:SL2.40ch06:40268226..40268618+ go_terms:GO:0005634 functional_description:"Genomic DNA chromosome 5 P1 clone MSN9 (AHRD V1 ---- Q9FL19_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00056148g0009.1 protein AED:0.03 eAED:0.03 QI:189|0.75|0.8|1|0|0|5|623|305; (*GB) gi|255584594|ref|XP_002533021.1| (e_value=3e-101) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=1e-25) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G58110.2 (e_value=2e-27) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=4e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00040377g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|356511597|ref|XP_003524510.1| (e_value=9e-60) PREDICTED: oleosin 16 kDa-like [Glycine max];; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=3e-17) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT3G18570.1 (e_value=4e-38) | Symbols: | Oleosin family protein | chr3:6396072-6396572 REVERSE LENGTH=166;; (*ITAG) Solyc03g119820.1.1 (e_value=3e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62444432-62444929 transcript_region:SL2.40ch03:62444432..62444929- go_terms:GO:0016021 functional_description:"Oleosin Bn-V (AHRD V1 ***- B6UIA7_MAIZE); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00000079g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|76; (*GB) gi|219673975|ref|YP_002456460.1| (e_value=4e-27) ATP synthase CF0 subunit III [Trifolium subterraneum];; (*SWP) sp|Q1ACN0|ATPH_CHAVU (e_value=3e-28) ATP synthase subunit c, chloroplastic OS=Chara vulgaris GN=atpH PE=3 SV=1;; (*ITAG) ATCG00140.1 (e_value=4e-29) | Symbols: ATPH | ATP synthase subunit C family protein | chrC:13262-13507 REVERSE LENGTH=81;; (*ITAG) Solyc08g028860.1.1 (e_value=4e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21737386-21737631 transcript_region:SL2.40ch08:21737386..21737631- go_terms:GO:0033177,GO:0045263 functional_description:"ATP synthase subunit c chloroplastic (AHRD V1 ***- Q589B5_SILLA); contains Interpro domain(s) IPR005953 ATPase, F0 complex, subunit C, bacterial and chloroplast "; GO:0033177,GO:0045263 NbS00000079g0106.1 protein AED:0.20 eAED:0.20 QI:641|1|1|1|0.81|0.70|17|396|494 NbS00049758g0006.1 protein AED:0.25 eAED:0.25 QI:9|0.5|0.4|0.8|0.5|0.6|5|470|488; (*GB) gi|224109332|ref|XP_002315162.1| (e_value=6e-102) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40070.1 (e_value=8e-83) | Symbols: | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16728378-16731160 REVERSE LENGTH=607;; (*ITAG) Solyc03g096090.2.1 (e_value=4e-108) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00000617g0017.1 protein AED:0.07 eAED:0.07 QI:73|0.71|0.5|0.87|0.42|0.5|8|0|691; (*GB) gi|255538774|ref|XP_002510452.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|P82859|LECA_CASCR (e_value=7e-27) Agglutinin OS=Castanea crenata PE=1 SV=1;; (*TAIR) AT1G19715.3 (e_value=0.0) | Symbols: | Mannose-binding lectin superfamily protein | chr1:6816934-6819432 REVERSE LENGTH=601;; (*ITAG) Solyc10g078600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59693842-59697055 transcript_region:SL2.40ch10:59693842..59697055- functional_description:"Myrosinase-binding protein (Fragment) (AHRD V1 *--- Q96342_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00000617g0018.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.5|1|0.66|0.75|4|0|337; (*GB) gi|14031051|gb|AAK52085.1| (e_value=0.0) peroxidase [Nicotiana tabacum];; (*SWP) sp|Q96512|PER9_ARATH (e_value=6e-145) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1;; (*TAIR) AT1G44970.1 (e_value=5e-146) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc04g080760.2.1 (e_value=5e-168) genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00000617g0016.1 protein AED:0.38 eAED:0.38 QI:0|1|0.83|1|0.8|0.83|6|406|259; (*GB) gi|224085774|ref|XP_002307692.1| (e_value=1e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|O94424|T2FB_SCHPO (e_value=1e-21) Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1;; (*TAIR) AT1G75510.1 (e_value=2e-113) | Symbols: | Transcription initiation factor IIF, beta subunit | chr1:28347254-28348629 REVERSE LENGTH=261;; (*ITAG) Solyc07g032090.2.1 (e_value=1e-156) genomic_reference:SL2.40ch07 gene_region:34650067-34660034 transcript_region:SL2.40ch07:34650067..34660034- go_terms:GO:0005515,GO:0016251 functional_description:"Transcription initiation factor IIF subunit beta (AHRD V1 **** B6K7X8_SCHJY); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit "; GO:0005515,GO:0016251 NbS00053001g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|7672732|gb|AAF66615.1| (e_value=1e-34) LRR receptor-like protein kinase [Nicotiana tabacum];; (*SWP) sp|P43298|TMK1_ARATH (e_value=4e-30) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=3e-31) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc01g108840.2.1 (e_value=7e-35) genomic_reference:SL2.40ch01 gene_region:87756900-87761019 transcript_region:SL2.40ch01:87756900..87761019- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00036835g0008.1 protein AED:0.40 eAED:0.41 QI:0|0.75|0.69|0.92|0.91|0.84|13|302|581; (*GB) gi|225451808|ref|XP_002281380.1| (e_value=0.0) PREDICTED: probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q9LFU5|TRM1_ARATH (e_value=0.0) Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3;; (*TAIR) AT5G15810.1 (e_value=0.0) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691;; (*ITAG) Solyc03g070400.1.1 (e_value=7e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:39178389-39180957 transcript_region:SL2.40ch03:39178389..39180957- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- C0HB58_SALSA); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00036835g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|1|0.66|0.5|4|0|329; (*GB) gi|225451806|ref|XP_002281356.1| (e_value=0.0) PREDICTED: alpha-1,4-glucan-protein synthase [UDP-forming] 2 [Vitis vinifera];; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc02g089170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45629291-45630890 transcript_region:SL2.40ch02:45629291..45630890+ go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00036835g0007.1 protein AED:0.16 eAED:0.16 QI:76|1|1|1|0.71|0.75|8|263|464; (*GB) gi|109649528|gb|ABG36709.1| (e_value=0.0) cytochrome P450 CYP85A1 [Nicotiana tabacum];; (*SWP) sp|Q43147|C85A1_SOLLC (e_value=0.0) Cytochrome P450 85A1 OS=Solanum lycopersicum GN=CYP85A1 PE=2 SV=1;; (*TAIR) AT5G38970.1 (e_value=0.0) | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassinosteroid-6-oxidase 1 | chr5:15594935-15597774 REVERSE LENGTH=465;; (*ITAG) Solyc02g089160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45622003-45624825 transcript_region:SL2.40ch02:45622003..45624825+ go_terms:GO:0004497 functional_description:"Cytochrome P450"; GO:0004497 NbS00035940g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|224099217|ref|XP_002311407.1| (e_value=1e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LEY9|NHP2_ARATH (e_value=6e-66) H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1;; (*TAIR) AT5G08180.2 (e_value=5e-67) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631843-2633374 REVERSE LENGTH=156;; (*ITAG) Solyc12g038980.1.1 (e_value=2e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37136481-37138218 transcript_region:SL2.40ch12:37136481..37138218- functional_description:"50S ribosomal protein L7Ae (AHRD V1 *--- RL7A_NANEQ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; NbS00011005g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|167; (*GB) gi|255586329|ref|XP_002533815.1| (e_value=8e-29) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g123670.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:64504681-64506040 transcript_region:SL2.40ch03:64504681..64506040+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011005g0013.1 protein AED:0.15 eAED:0.17 QI:312|0.75|0.69|1|0.66|0.69|13|257|697; (*GB) gi|225441973|ref|XP_002271118.1| (e_value=0.0) PREDICTED: pumilio homolog 23-like [Vitis vinifera];; (*SWP) sp|Q9C552|PUM23_ARATH (e_value=0.0) Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1;; (*TAIR) AT1G72320.3 (e_value=0.0) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232514 REVERSE LENGTH=731;; (*ITAG) Solyc03g123640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00011005g0012.1 protein AED:0.21 eAED:0.21 QI:239|0.57|0.75|1|0.71|0.75|8|590|209; (*GB) gi|350537617|ref|NP_001234557.1| (e_value=5e-113) ubiquitin conjugating enzyme 2 [Solanum lycopersicum];; (*SWP) sp|Q9SHI7|UBC34_ARATH (e_value=4e-82) Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1;; (*TAIR) AT1G17280.2 (e_value=3e-83) | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 | chr1:5917146-5919162 REVERSE LENGTH=237;; (*ITAG) Solyc03g123660.2.1 (e_value=1e-115) genomic_reference:SL2.40ch03 gene_region:64499904-64503851 transcript_region:SL2.40ch03:64499904..64503851+ go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin conjugating enzyme 2 (AHRD V1 **** Q94FU3_SOLLC); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0005515,GO:0004842 NbS00011005g0007.1 protein AED:0.02 eAED:0.02 QI:153|1|0|1|1|1|2|67|84; (*ITAG) Solyc03g123650.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64494928-64495257 transcript_region:SL2.40ch03:64494928..64495257- functional_description:"Unknown Protein (AHRD V1)"; NbS00019403g0016.1 protein AED:0.00 eAED:0.00 QI:61|1|1|1|1|1|2|349|265; (*GB) gi|29123378|gb|AAO62942.1| (e_value=0.0) chlorophyll a/b binding protein [Nicotiana tabacum];; (*SWP) sp|P12062|CB26_PETSP (e_value=0.0) Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1;; (*TAIR) AT2G05100.1 (e_value=1e-175) | Symbols: LHCB2.1, LHCB2 | photosystem II light harvesting complex gene 2.1 | chr2:1823449-1824331 REVERSE LENGTH=265;; (*ITAG) Solyc07g047850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56404445-56405833 transcript_region:SL2.40ch07:56404445..56405833- go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 **** CB24_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00019403g0015.1 protein AED:0.08 eAED:0.08 QI:249|0.85|0.87|1|0.85|0.75|8|0|1287; (*GB) gi|225447584|ref|XP_002272021.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249432 isoform 1 [Vitis vinifera];; (*TAIR) AT2G05120.1 (e_value=0.0) | Symbols: | Nucleoporin, Nup133/Nup155-like | chr2:1842069-1846858 REVERSE LENGTH=1285;; (*ITAG) Solyc07g047860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56407270-56414654 transcript_region:SL2.40ch07:56407270..56414654- go_terms:GO:0005515 functional_description:"Nup133 nucleoporin family protein expressed (AHRD V1 **-- Q10PQ6_ORYSJ); contains Interpro domain(s) IPR014908 Nup133, N-terminal "; GO:0005515 NbS00019403g0023.1 protein AED:0.38 eAED:0.39 QI:18|1|0|1|0|0.5|2|0|106; (*GB) gi|224120664|ref|XP_002330921.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15802.1 (e_value=1e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5156578-5157520 REVERSE LENGTH=99;; (*ITAG) Solyc07g047840.2.1 (e_value=6e-50) genomic_reference:SL2.40ch07 gene_region:56399756-56402164 transcript_region:SL2.40ch07:56399756..56402164- functional_description:"Unknown Protein (AHRD V1)"; NbS00019403g0027.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|97|927; (*GB) gi|147858101|emb|CAN78867.1| (e_value=0.0) hypothetical protein VITISV_041982 [Vitis vinifera];; (*SWP) sp|Q9LSL9|PP445_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1;; (*TAIR) AT5G65560.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:26201012-26203759 REVERSE LENGTH=915;; (*ITAG) Solyc07g047820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56348851-56351592 transcript_region:SL2.40ch07:56348851..56351592+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00019403g0017.1 protein AED:0.27 eAED:0.27 QI:925|1|0.75|1|0.33|0.5|4|0|108 NbS00019403g0025.1 protein AED:0.27 eAED:0.28 QI:0|0.25|0.2|1|0.75|0.6|5|0|660; (*GB) gi|296090300|emb|CBI40119.3| (e_value=3e-124) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G30130.1 (e_value=7e-70) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:14735401-14737793 FORWARD LENGTH=725;; (*ITAG) Solyc07g047830.2.1 (e_value=2e-133) genomic_reference:SL2.40ch07 gene_region:56391629-56398920 transcript_region:SL2.40ch07:56391629..56398920+ functional_description:"Bzip-like transcription factor-like (AHRD V1 *-*- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00019403g0026.1 protein AED:0.71 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|64 NbS00047869g0004.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.55|0.66|0.37|0.66|9|0|345; (*GB) gi|359478263|ref|XP_002276253.2| (e_value=9e-109) PREDICTED: uncharacterized protein LOC100254146 [Vitis vinifera];; (*TAIR) AT3G47550.6 (e_value=3e-51) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17525278 FORWARD LENGTH=288;; (*ITAG) Solyc08g014080.2.1 (e_value=1e-138) genomic_reference:SL2.40ch08 gene_region:3620956-3625213 transcript_region:SL2.40ch08:3620956..3625213+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbC25875444g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|0|2|0|159; (*GB) gi|871485|emb|CAA58733.1| (e_value=1e-108) PAR-1a [Nicotiana tabacum];; (*TAIR) AT5G52390.1 (e_value=5e-68) | Symbols: | PAR1 protein | chr5:21264281-21265173 REVERSE LENGTH=195;; (*ITAG) Solyc03g025670.2.1 (e_value=1e-91) genomic_reference:SL2.40ch03 gene_region:7490876-7492241 transcript_region:SL2.40ch03:7490876..7492241+ functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00027346g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|255578850|ref|XP_002530279.1| (e_value=4e-111) 60S ribosomal protein L12, putative [Ricinus communis];; (*SWP) sp|O50003|RL12_PRUAR (e_value=8e-108) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=2e-105) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=8e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00009963g0001.1 protein AED:0.36 eAED:0.36 QI:409|0.57|0.37|1|0.85|0.75|8|0|406; (*GB) gi|225430291|ref|XP_002285138.1| (e_value=7e-47) PREDICTED: uncharacterized protein LOC100244101 [Vitis vinifera];; (*TAIR) AT4G32330.2 (e_value=5e-43) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr4:15609801-15611867 FORWARD LENGTH=436;; (*ITAG) Solyc08g059800.2.1 (e_value=2e-157) genomic_reference:SL2.40ch08 gene_region:42713283-42722705 transcript_region:SL2.40ch08:42713283..42722705+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00009963g0007.1 protein AED:0.18 eAED:0.51 QI:0|1|0.33|1|1|1|3|185|284; (*GB) gi|225445531|ref|XP_002285275.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera];; (*TAIR) AT1G80130.1 (e_value=2e-37) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30141250-30142478 REVERSE LENGTH=305;; (*ITAG) Solyc03g116670.2.1 (e_value=2e-41) genomic_reference:SL2.40ch03 gene_region:60036546-60038822 transcript_region:SL2.40ch03:60036546..60038822+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011452g0005.1 protein AED:0.26 eAED:0.34 QI:127|0|0.5|1|0|0.5|2|0|143; (*GB) gi|297745702|emb|CBI41024.3| (e_value=3e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g077160.1.1 (e_value=4e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:59683010-59683384 transcript_region:SL2.40ch04:59683010..59683384- functional_description:"Unknown Protein (AHRD V1)"; NbS00011452g0002.1 protein AED:0.01 eAED:0.01 QI:288|1|1|1|1|1|2|403|444; (*GB) gi|225458956|ref|XP_002285542.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245533 isoform 1 [Vitis vinifera];; (*TAIR) AT1G10020.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461;; (*ITAG) Solyc04g077140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59674609-59676971 transcript_region:SL2.40ch04:59674609..59676971+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00011452g0015.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0|0.33|3|368|129; (*GB) gi|284433790|gb|ADB85101.1| (e_value=9e-65) hypothetical protein [Jatropha curcas];; (*SWP) sp|O80594|ERG28_ARATH (e_value=4e-60) Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2;; (*TAIR) AT1G10030.1 (e_value=3e-61) | Symbols: ERG28 | homolog of yeast ergosterol28 | chr1:3273972-3275631 FORWARD LENGTH=129;; (*ITAG) Solyc04g077150.2.1 (e_value=1e-78) genomic_reference:SL2.40ch04 gene_region:59679792-59682733 transcript_region:SL2.40ch04:59679792..59682733+ go_terms:GO:0030674 functional_description:"Erg28 like protein expressed (AHRD V1 ***- Q2QLQ4_ORYSJ); contains Interpro domain(s) IPR005352 Erg28-like "; GO:0030674 NbS00011452g0017.1 protein AED:0.37 eAED:0.37 QI:0|0.57|0.5|1|0.42|0.37|8|0|309; (*GB) gi|356510061|ref|XP_003523759.1| (e_value=1e-77) PREDICTED: putative lipase YDR444W-like [Glycine max];; (*TAIR) AT1G10040.1 (e_value=2e-72) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3276108-3278464 REVERSE LENGTH=412;; (*ITAG) Solyc04g077180.1.1 (e_value=6e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59691995-59697855 transcript_region:SL2.40ch04:59691995..59697855- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 **-- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbS00010322g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|75 NbS00010322g0009.1 protein AED:0.24 eAED:0.26 QI:9|0.6|0.66|1|1|1|6|408|424; (*GB) gi|255568946|ref|XP_002525443.1| (e_value=8e-133) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-20) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G04030.1 (e_value=6e-92) | Symbols: | Homeodomain-like superfamily protein | chr3:1042920-1044574 REVERSE LENGTH=388;; (*ITAG) Solyc10g085620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64062950-64065054 transcript_region:SL2.40ch10:64062950..64065054- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00011548g0004.1 protein AED:0.17 eAED:0.22 QI:0|1|0|1|0|0.5|2|0|294; (*GB) gi|356499538|ref|XP_003518596.1| (e_value=3e-106) PREDICTED: trans-2,3-enoyl-CoA reductase-like [Glycine max];; (*SWP) sp|Q28891|S5A1_MACFA (e_value=2e-23) 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1;; (*TAIR) AT5G16010.1 (e_value=8e-91) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr5:5227982-5229012 FORWARD LENGTH=268;; (*ITAG) Solyc11g006290.1.1 (e_value=1e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1022215-1023710 transcript_region:SL2.40ch11:1022215..1023710- go_terms:GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 ***- D7M7I5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016021 NbS00047247g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.84|1|0.75|0.84|13|0|378; (*GB) gi|115315688|gb|ABI93942.1| (e_value=0.0) syntaxin [Nicotiana benthamiana];; (*SWP) sp|Q9SRV7|SY131_ARATH (e_value=5e-132) Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1;; (*TAIR) AT3G03800.1 (e_value=4e-133) | Symbols: SYP131, ATSYP131 | syntaxin of plants 131 | chr3:969314-971460 FORWARD LENGTH=306;; (*ITAG) Solyc10g081580.1.1 (e_value=1e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61939031-61947634 transcript_region:SL2.40ch10:61939031..61947634+ go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00024491g0011.1 protein AED:0.31 eAED:0.31 QI:146|1|1|1|0.8|0.66|6|437|218; (*GB) gi|169589|gb|AAA33847.1| (e_value=7e-121) spliceosomal protein [Solanum tuberosum];; (*SWP) sp|O22922|RU2B1_ARATH (e_value=1e-91) U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1;; (*TAIR) AT2G30260.1 (e_value=7e-93) | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B | chr2:12905557-12907434 REVERSE LENGTH=232;; (*ITAG) Solyc06g082360.2.1 (e_value=4e-117) genomic_reference:SL2.40ch06 gene_region:44492823-44498415 transcript_region:SL2.40ch06:44492823..44498415- go_terms:GO:0005515 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 ***- A8QKB2_MUSSP); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00024491g0010.1 protein AED:0.18 eAED:0.18 QI:44|1|0.5|1|0|1|2|0|88; (*GB) gi|225434474|ref|XP_002278141.1| (e_value=4e-23) PREDICTED: uncharacterized protein LOC100246769 [Vitis vinifera];; (*TAIR) AT1G07060.1 (e_value=1e-12) | Symbols: | unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2167138-2168397 REVERSE LENGTH=233;; (*ITAG) Solyc06g082320.2.1 (e_value=9e-37) genomic_reference:SL2.40ch06 gene_region:44470958-44473727 transcript_region:SL2.40ch06:44470958..44473727- functional_description:"Unknown Protein (AHRD V1)"; NbS00024491g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|82 NbS00051590g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.66|1|1|0.66|0.5|4|113|281; (*GB) gi|225431255|ref|XP_002267958.1| (e_value=4e-108) PREDICTED: 3-epi-6-deoxocathasterone 23-monooxygenase [Vitis vinifera];; (*SWP) sp|Q9M066|C90C1_ARATH (e_value=3e-108) 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3;; (*TAIR) AT4G36380.1 (e_value=2e-109) | Symbols: ROT3 | Cytochrome P450 superfamily protein | chr4:17187973-17192202 REVERSE LENGTH=524;; (*ITAG) Solyc02g084740.2.1 (e_value=6e-153) genomic_reference:SL2.40ch02 gene_region:42420436-42426374 transcript_region:SL2.40ch02:42420436..42426374- go_terms:GO:0016709 functional_description:"Cytochrome P450"; GO:0016709 NbS00054841g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.5|0.75|0|0|4|773|126 NbS00047047g0005.1 protein AED:0.23 eAED:0.23 QI:99|1|1|1|0.54|0.66|12|223|547; (*GB) gi|225460839|ref|XP_002276969.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 6-like [Vitis vinifera];; (*SWP) sp|O74462|TAF6_SCHPO (e_value=1e-103) Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1;; (*TAIR) AT1G04950.3 (e_value=0.0) | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIATED FACTOR II 59 | chr1:1403606-1407184 REVERSE LENGTH=549;; (*ITAG) Solyc07g065040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64193971-64198347 transcript_region:SL2.40ch07:64193971..64198347+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 6 (AHRD V1 **** B6K6E4_SCHJY); contains Interpro domain(s) IPR011442 Protein of unknown function DUF1546 "; GO:0005515,GO:0003700 NbS00014516g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|101; (*GB) gi|224122034|ref|XP_002330714.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=3e-24) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=2e-25) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc09g014700.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:6708363-6711119 transcript_region:SL2.40ch09:6708363..6711119+ functional_description:"LOB domain family protein (AHRD V1 ***- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00039219g0008.1 protein AED:0.01 eAED:0.01 QI:117|1|1|1|0|0.5|2|78|216; (*GB) gi|225431147|ref|XP_002266236.1| (e_value=5e-48) PREDICTED: uncharacterized protein LOC100250667 [Vitis vinifera];; (*SWP) sp|O48822|Y2794_ARATH (e_value=5e-22) WEB family protein At2g17940 OS=Arabidopsis thaliana GN=At2g17940 PE=2 SV=1;; (*TAIR) AT2G17940.1 (e_value=3e-23) | Symbols: | Plant protein of unknown function (DUF827) | chr2:7802878-7803815 FORWARD LENGTH=208;; (*ITAG) Solyc03g033550.2.1 (e_value=3e-73) genomic_reference:SL2.40ch03 gene_region:9382901-9384358 transcript_region:SL2.40ch03:9382901..9384358+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00039219g0002.1 protein AED:0.03 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|224133714|ref|XP_002327662.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g083930.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41753193-41753516 transcript_region:SL2.40ch02:41753193..41753516+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026214g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|225436516|ref|XP_002273603.1| (e_value=2e-31) PREDICTED: uncharacterized protein LOC100244862 [Vitis vinifera];; (*TAIR) AT3G09870.1 (e_value=1e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr3:3027555-3027896 REVERSE LENGTH=113;; (*ITAG) Solyc06g074950.1.1 (e_value=4e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42841790-42842065 transcript_region:SL2.40ch06:42841790..42842065- go_terms:GO:0005516 functional_description:"Auxin-responsive family protein (AHRD V1 ***- Q8S8L5_ARATH); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00008464g0006.1 protein AED:0.18 eAED:0.18 QI:156|1|1|1|1|1|6|393|226; (*GB) gi|76161000|gb|ABA40463.1| (e_value=1e-101) elongation factor-like protein [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=2e-82) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT5G12110.1 (e_value=8e-83) | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr5:3914483-3915732 FORWARD LENGTH=228;; (*ITAG) Solyc11g072190.1.1 (e_value=3e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52501034-52504379 transcript_region:SL2.40ch11:52501034..52504379- go_terms:GO:0005853 functional_description:"Elongation factor beta-1 (AHRD V1 ***- A2YPM1_ORYSI); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0005853 NbS00005344g0008.1 protein AED:0.00 eAED:0.00 QI:116|1|1|1|0|0.5|2|202|74 NbS00005344g0009.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|0|0.5|2|61|331; (*GB) gi|296085490|emb|CBI29222.3| (e_value=5e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940A6|PP325_ARATH (e_value=7e-65) Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2;; (*TAIR) AT4G19440.2 (e_value=4e-66) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10602006-10604483 REVERSE LENGTH=825;; (*ITAG) Solyc11g005940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:757823-760342 transcript_region:SL2.40ch11:757823..760342- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL1_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005344g0024.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|0.75|0.8|5|269|500; (*GB) gi|85068674|gb|ABC69417.1| (e_value=0.0) CYP72A54 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g006140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:984510-988395 transcript_region:SL2.40ch07:984510..988395- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00005344g0021.1 protein AED:0.24 eAED:0.24 QI:211|1|1|1|1|1|5|470|173; (*GB) gi|255585475|ref|XP_002533430.1| (e_value=1e-82) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54UB0|TM208_DICDI (e_value=7e-23) Transmembrane protein 208 homolog OS=Dictyostelium discoideum GN=tmem208 PE=3 SV=1;; (*TAIR) AT2G23940.1 (e_value=5e-83) | Symbols: | Protein of unknown function (DUF788) | chr2:10184199-10185097 FORWARD LENGTH=173;; (*ITAG) Solyc07g006150.2.1 (e_value=6e-102) genomic_reference:SL2.40ch07 gene_region:990382-994388 transcript_region:SL2.40ch07:990382..994388- functional_description:"Transmembrane protein 208 (AHRD V1 ***- C1C182_9MAXI); contains Interpro domain(s) IPR008506 Protein of unknown function DUF788 "; NbS00005344g0026.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.63|0.90|0.9|0.90|11|0|533; (*GB) gi|359484816|ref|XP_003633168.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g23950-like [Vitis vinifera];; (*SWP) sp|Q0WVM4|Y2239_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1;; (*TAIR) AT2G23950.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:10187204-10189969 REVERSE LENGTH=634;; (*ITAG) Solyc07g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:965123-969368 transcript_region:SL2.40ch07:965123..969368+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00006793g0003.1 protein AED:0.29 eAED:0.29 QI:178|1|1|1|1|1|2|653|274; (*GB) gi|255547610|ref|XP_002514862.1| (e_value=5e-142) Delta3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|O35459|ECH1_MOUSE (e_value=7e-75) Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial OS=Mus musculus GN=Ech1 PE=2 SV=1;; (*TAIR) AT5G43280.1 (e_value=6e-138) | Symbols: ATDCI1, DCI1 | delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 | chr5:17367947-17369113 FORWARD LENGTH=278;; (*ITAG) Solyc05g024240.2.1 (e_value=2e-132) genomic_reference:SL2.40ch05 gene_region:30892563-30895002 transcript_region:SL2.40ch05:30892563..30895002+ go_terms:GO:0008152 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_SHIF8); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00006793g0006.1 protein AED:0.26 eAED:0.42 QI:0|0|0|1|0|0|2|0|167; (*GB) gi|50058595|gb|AAT69050.1| (e_value=9e-46) F1-ATPase alpha subunit [Falkia repens];; (*SWP) sp|P24459|ATPAM_PHAVU (e_value=1e-44) ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=4e-44) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00006793g0005.1 protein AED:0.34 eAED:0.67 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|328925309|gb|AEB66278.1| (e_value=4e-28) ATP synthase subunit 1, partial (mitochondrion) [Silene multinervia];; (*SWP) sp|Q06735|ATPAM_BETVU (e_value=3e-28) ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=2e-28) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00061367g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.6|0.5|1|0.8|0.83|6|308|311; (*GB) gi|255562880|ref|XP_002522445.1| (e_value=3e-63) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8SAY0|RK18_ORYSJ (e_value=5e-16) 50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1;; (*TAIR) AT1G14205.1 (e_value=5e-57) | Symbols: | Ribosomal L18p/L5e family protein | chr1:4855582-4856762 FORWARD LENGTH=165;; (*ITAG) Solyc05g007920.2.1 (e_value=9e-88) genomic_reference:SL2.40ch05 gene_region:2350007-2351451 transcript_region:SL2.40ch05:2350007..2351451+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00033080g0001.1 protein AED:0.07 eAED:0.16 QI:30|-1|0|1|-1|1|1|0|121; (*ITAG) Solyc08g082380.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62374897-62375325 transcript_region:SL2.40ch08:62374897..62375325- functional_description:"Unknown Protein (AHRD V1)"; NbS00053870g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|0|0|2|0|57; (*GB) gi|225425460|ref|XP_002279240.1| (e_value=1e-23) PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera];; (*TAIR) AT1G67420.2 (e_value=2e-20) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922;; (*ITAG) Solyc12g035500.1.1 (e_value=1e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:25714177-25741519 transcript_region:SL2.40ch12:25714177..25741519+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_XENLA); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00053870g0003.1 protein AED:0.43 eAED:0.57 QI:0|0|0.5|0.75|1|1|4|193|74 NbC26005274g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|136; (*GB) gi|351723703|ref|NP_001238056.1| (e_value=8e-28) uncharacterized protein LOC100527827 [Glycine max];; (*TAIR) AT5G50740.1 (e_value=7e-17) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637847 REVERSE LENGTH=283;; (*ITAG) Solyc04g015030.2.1 (e_value=3e-34) genomic_reference:SL2.40ch04 gene_region:5235855-5241900 transcript_region:SL2.40ch04:5235855..5241900+ go_terms:GO:0046914 functional_description:"Metal ion binding protein (AHRD V1 *--* B6SZL4_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0046914 NbS00015746g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.4|0.5|1|0.6|0.66|6|270|369; (*GB) gi|147858106|emb|CAN81391.1| (e_value=1e-65) hypothetical protein VITISV_043255 [Vitis vinifera];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=6e-39) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=5e-40) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029130.2.1 (e_value=4e-148) genomic_reference:SL2.40ch08 gene_region:22756077-22781193 transcript_region:SL2.40ch08:22756077..22781193+ functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 *-*- B1AR17_MOUSE); contains Interpro domain(s) IPR009462 Protein of unknown function DUF1086 "; NbS00015746g0007.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|3|0|424; (*GB) gi|359485451|ref|XP_002276944.2| (e_value=3e-117) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=8e-64) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=6e-65) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc06g006040.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00055506g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|22742|emb|CAA78408.1| (e_value=1e-30) pseudo-atpA [Glycine max];; (*SWP) sp|Q01915|ATPAM_SOYBN (e_value=1e-31) ATP synthase subunit alpha, mitochondrial OS=Glycine max GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=1e-28) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc11g039980.1.1 (e_value=1e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00039201g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0.9|1|0.88|0.8|10|308|464; (*GB) gi|356515577|ref|XP_003526475.1| (e_value=2e-140) PREDICTED: lupus La protein homolog A-like [Glycine max];; (*SWP) sp|P33399|LHP1_YEAST (e_value=3e-19) La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LHP1 PE=1 SV=2;; (*TAIR) AT4G32720.1 (e_value=4e-101) | Symbols: AtLa1, La1 | La protein 1 | chr4:15787313-15789683 FORWARD LENGTH=433;; (*ITAG) Solyc08g068310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54615972-54621953 transcript_region:SL2.40ch08:54615972..54621953+ go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"RNA-binding La domain protein (AHRD V1 *--- B8NID1_ASPFN); contains Interpro domain(s) IPR014886 RNA binding motif "; GO:0003676,GO:0030529,GO:0000166 NbS00039201g0009.1 protein AED:0.41 eAED:0.41 QI:0|1|0.83|1|1|1|6|0|215; (*GB) gi|255551042|ref|XP_002516569.1| (e_value=2e-122) Coiled-coil domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q78PG9|CCD25_MOUSE (e_value=1e-73) Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25 PE=1 SV=1;; (*TAIR) AT5G11500.1 (e_value=2e-123) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3676747-3678946 FORWARD LENGTH=215;; (*ITAG) Solyc08g068300.2.1 (e_value=4e-135) genomic_reference:SL2.40ch08 gene_region:54605786-54613571 transcript_region:SL2.40ch08:54605786..54613571+ go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 25 (AHRD V1 ***- B4G0U8_MAIZE); contains Interpro domain(s) IPR008532 Protein of unknown function DUF814 "; GO:0005515 NbS00010134g0012.1 protein AED:0.19 eAED:0.19 QI:214|0.33|0.75|1|1|1|4|528|313; (*GB) gi|6472585|dbj|BAA87058.1| (e_value=8e-171) WIZZ [Nicotiana tabacum];; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=3e-44) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1;; (*TAIR) AT1G80840.1 (e_value=3e-45) | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302;; (*ITAG) Solyc06g068460.2.1 (e_value=1e-126) genomic_reference:SL2.40ch06 gene_region:38823797-38825771 transcript_region:SL2.40ch06:38823797..38825771+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 1 (AHRD V1 **** C0L2S0_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00010134g0014.1 protein AED:0.31 eAED:0.31 QI:177|0.9|0.90|1|0.7|0.72|11|289|337; (*GB) gi|225443166|ref|XP_002264352.1| (e_value=1e-169) PREDICTED: uncharacterized protein LOC100263772 [Vitis vinifera];; (*TAIR) AT1G73060.1 (e_value=3e-160) | Symbols: LPA3 | Low PSII Accumulation 3 | chr1:27479027-27481258 FORWARD LENGTH=358;; (*ITAG) Solyc06g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38831809-38837277 transcript_region:SL2.40ch06:38831809..38837277- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q01G24_OSTTA); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00010134g0013.1 protein AED:0.33 eAED:0.81 QI:0|0|0|0.66|0|0.33|3|0|182 NbS00010134g0101.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|1|1|6|468|445 NbS00012128g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|499; (*GB) gi|225452596|ref|XP_002275800.1| (e_value=3e-170) PREDICTED: uncharacterized protein LOC100255946 [Vitis vinifera];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=6e-31) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT3G28610.1 (e_value=7e-161) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10724990-10726414 FORWARD LENGTH=474;; (*ITAG) Solyc02g087540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44517202-44518761 transcript_region:SL2.40ch02:44517202..44518761- go_terms:GO:0016887 functional_description:"Cell division AAA ATPase family protein (AHRD V1 **-* B6Z265_WHEAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00019806g0010.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|1|1|2|233|418; (*GB) gi|209954705|dbj|BAG80543.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SYK9|U74E2_ARATH (e_value=2e-144) UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=1;; (*TAIR) AT1G05680.1 (e_value=2e-145) | Symbols: UGT74E2 | Uridine diphosphate glycosyltransferase 74E2 | chr1:1703196-1704639 REVERSE LENGTH=453;; (*ITAG) Solyc12g096820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63926746-63928578 transcript_region:SL2.40ch12:63926746..63928578+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00019806g0011.1 protein AED:0.12 eAED:0.17 QI:0|0|0|1|0|0|3|0|349; (*GB) gi|209954705|dbj|BAG80543.1| (e_value=9e-127) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SYK9|U74E2_ARATH (e_value=9e-86) UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=1;; (*TAIR) AT1G05680.1 (e_value=6e-87) | Symbols: UGT74E2 | Uridine diphosphate glycosyltransferase 74E2 | chr1:1703196-1704639 REVERSE LENGTH=453;; (*ITAG) Solyc12g096830.1.1 (e_value=7e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63929227-63931184 transcript_region:SL2.40ch12:63929227..63931184+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00037638g0002.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|0|0|2|0|250; (*GB) gi|18410796|ref|NP_567053.1| (e_value=5e-36) putative protein kinase [Arabidopsis thaliana];; (*SWP) sp|O64798|Y1747_ARATH (e_value=2e-28) Inactive serine/threonine-protein kinase At1g67470 OS=Arabidopsis thaliana GN=At1g67470 PE=2 SV=1;; (*TAIR) AT3G57750.2 (e_value=1e-38) | Symbols: | Protein kinase superfamily protein | chr3:21394050-21395054 FORWARD LENGTH=334;; (*ITAG) Solyc06g060680.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35097286-35098164 transcript_region:SL2.40ch06:35097286..35098164- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase 5 (AHRD V1 **** RLK5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00037638g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|0|0|2|0|144; (*GB) gi|350535879|ref|NP_001233962.1| (e_value=4e-16) S-protein homologue precursor [Solanum lycopersicum];; (*TAIR) AT1G04645.1 (e_value=3e-16) | Symbols: | Plant self-incompatibility protein S1 family | chr1:1293853-1294239 REVERSE LENGTH=128;; (*ITAG) Solyc09g011100.1.1 (e_value=1e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4428078-4428527 transcript_region:SL2.40ch09:4428078..4428527+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 -**- C7FE99_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00008396g0001.1 protein AED:0.00 eAED:0.00 QI:488|1|0.5|1|0|0|2|0|177; (*GB) gi|388500130|gb|AFK38131.1| (e_value=5e-48) unknown [Lotus japonicus];; (*TAIR) AT1G72510.2 (e_value=1e-40) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc03g122300.1.1 (e_value=4e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64225365-64225850 transcript_region:SL2.40ch03:64225365..64225850+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00008396g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.91|0.76|1|0.5|0.76|13|0|446; (*GB) gi|224119508|ref|XP_002331178.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SYG7|AL7B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 7 member B4 OS=Arabidopsis thaliana GN=ALDH7B4 PE=2 SV=3;; (*TAIR) AT1G54100.2 (e_value=0.0) | Symbols: ALDH7B4 | aldehyde dehydrogenase 7B4 | chr1:20195435-20198853 REVERSE LENGTH=508;; (*ITAG) Solyc03g122310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64227127-64232821 transcript_region:SL2.40ch03:64227127..64232821- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 7b (AHRD V1 **** D9IFB7_WHEAT); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00032249g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|75; (*ITAG) Solyc08g044540.1.1 (e_value=3e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:33552497-33552721 transcript_region:SL2.40ch08:33552497..33552721+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032249g0006.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|261; (*GB) gi|297803624|ref|XP_002869696.1| (e_value=8e-79) hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8BMD7|MORC4_MOUSE (e_value=3e-18) MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2;; (*TAIR) AT4G24970.1 (e_value=1e-79) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc10g081760.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00032249g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|161; (*GB) gi|297734460|emb|CBI15707.3| (e_value=1e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G24970.1 (e_value=7e-70) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc10g081760.1.1 (e_value=2e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62092824-62095364 transcript_region:SL2.40ch10:62092824..62095364+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00032249g0017.1 protein AED:0.44 eAED:0.44 QI:45|0|0|0.57|0.33|0.42|7|0|209 NbS00032249g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.4|1|0.75|0.6|5|0|837; (*GB) gi|255553544|ref|XP_002517813.1| (e_value=0.0) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q8L709|CHX28_ARATH (e_value=0.0) Cation/H(+) antiporter 28 OS=Arabidopsis thaliana GN=CHX28 PE=2 SV=2;; (*TAIR) AT3G52080.1 (e_value=0.0) | Symbols: chx28 | cation/hydrogen exchanger 28 | chr3:19315090-19317735 FORWARD LENGTH=801;; (*ITAG) Solyc04g015990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6590404-6593289 transcript_region:SL2.40ch04:6590404..6593289+ go_terms:GO:0005451 functional_description:"Cation/H(+) antiporter 28 (AHRD V1 **** CHX28_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0005451 NbS00024029g0004.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|1|2|337|164; (*GB) gi|76161012|gb|ABA40469.1| (e_value=1e-112) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=1e-101) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=8e-103) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=1e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00051963g0003.1 protein AED:0.00 eAED:0.00 QI:286|1|1|1|1|1|2|9|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=5e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P93087|CALM_CAPAN (e_value=2e-105) Calmodulin OS=Capsicum annuum GN=CCM1 PE=2 SV=3;; (*TAIR) AT3G43810.1 (e_value=7e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc12g099990.1.1 (e_value=1e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65249443-65252546 transcript_region:SL2.40ch12:65249443..65252546- go_terms:GO:0005509 functional_description:"Calmodulin 2 (AHRD V1 ***- Q710C9_BRAOL); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00059271g0005.1 protein AED:0.11 eAED:0.11 QI:186|0.88|0.88|1|0.84|0.92|26|53|1858; (*GB) gi|356540444|ref|XP_003538699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100789512 [Glycine max];; (*SWP) sp|Q5F3R2|KDM5B_CHICK (e_value=2e-116) Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1;; (*TAIR) AT1G63490.1 (e_value=0.0) | Symbols: | transcription factor jumonji (jmjC) domain-containing protein | chr1:23544938-23551946 REVERSE LENGTH=1116;; (*ITAG) Solyc08g081000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61280219-61304350 transcript_region:SL2.40ch08:61280219..61304350- go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"Lysine-specific demethylase 5D (AHRD V1 *--- KDM5D_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634,GO:0008270,GO:0005622 NbS00059271g0006.1 protein AED:0.24 eAED:0.24 QI:318|0.87|0.94|1|0.93|0.94|17|346|553; (*GB) gi|122194121|sp|Q1W2L8.2|GSH1_TOBAC (e_value=0.0) RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor;; (*SWP) sp|Q1W2L8|GSH1_TOBAC (e_value=0.0) Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2;; (*TAIR) AT4G23100.3 (e_value=0.0) | Symbols: GSH1 | glutamate-cysteine ligase | chr4:12103458-12106751 REVERSE LENGTH=522;; (*ITAG) Solyc08g081010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61307398-61315331 transcript_region:SL2.40ch08:61307398..61315331- go_terms:GO:0004357 functional_description:"Glutamate-cysteine ligase (AHRD V1 **** Q7Y0R4_BRAJU); contains Interpro domain(s) IPR011556 Glutamate--cysteine ligase, plant "; GO:0004357 NbS00021022g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|365; (*GB) gi|224062053|ref|XP_002300731.1| (e_value=3e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|O23052|Y1515_ARATH (e_value=5e-121) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=4e-122) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=1e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021022g0007.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|305; (*GB) gi|255538832|ref|XP_002510481.1| (e_value=6e-164) tetratricopeptide repeat protein, tpr, putative [Ricinus communis];; (*SWP) sp|O23052|Y1515_ARATH (e_value=5e-158) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=4e-159) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=6e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00031393g0017.1 protein AED:0.28 eAED:0.28 QI:225|0.77|0.9|1|0.66|0.8|10|446|372; (*GB) gi|302143834|emb|CBI22695.3| (e_value=2e-154) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LF97|ASK21_ARATH (e_value=4e-133) SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1;; (*TAIR) AT3G61415.1 (e_value=3e-134) | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22722962-22725577 REVERSE LENGTH=351;; (*ITAG) Solyc06g036070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22139329-22147147 transcript_region:SL2.40ch06:22139329..22147147- go_terms:GO:0004842 functional_description:"SCF ubiquitin ligase skp1 component (AHRD V1 *--* D3TMR7_GLOMM); contains Interpro domain(s) IPR001232 SKP1 component "; GO:0004842 NbS00031393g0015.1 protein AED:0.30 eAED:0.30 QI:74|1|0.75|1|0.66|0.5|4|188|110; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=9e-55) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=7e-56) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc01g094560.2.1 (e_value=7e-74) genomic_reference:SL2.40ch01 gene_region:77748472-77751106 transcript_region:SL2.40ch01:77748472..77751106- go_terms:GO:0003735 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735 NbS00031393g0006.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|122 NbS00031393g0019.1 protein AED:0.26 eAED:0.26 QI:168|0.92|0.85|1|0.76|0.78|14|229|524; (*GB) gi|302143859|emb|CBI22720.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55FJ5|RPC3_DICDI (e_value=6e-12) DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum GN=polr3c PE=3 SV=1;; (*TAIR) AT3G49000.1 (e_value=2e-122) | Symbols: | RNA polymerase III subunit RPC82 family protein | chr3:18162903-18165846 FORWARD LENGTH=523;; (*ITAG) Solyc06g036000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22052164-22063575 transcript_region:SL2.40ch06:22052164..22063575+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase III subunit C (AHRD V1 ***- B0WS61_CULQU); contains Interpro domain(s) IPR008806 RNA polymerase III Rpc82, C -terminal "; GO:0006350 NbS00031393g0116.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|118 NbS00031393g0112.1 protein AED:0.02 eAED:0.02 QI:126|1|1|1|1|1|2|250|229 NbS00031393g0111.1 protein AED:0.26 eAED:0.29 QI:176|0.33|0.5|1|1|1|4|0|305 NbS00031393g0104.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|179 NbS00015932g0004.1 protein AED:0.19 eAED:0.19 QI:261|1|1|1|0.90|0.83|12|504|583; (*GB) gi|359493455|ref|XP_002266111.2| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 3 [Vitis vinifera];; (*SWP) sp|Q9HD45|TM9S3_HUMAN (e_value=0.0) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2;; (*TAIR) AT1G10950.1 (e_value=0.0) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc11g022540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14402969-14411888 transcript_region:SL2.40ch11:14402969..14411888- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00015932g0105.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|4|430|570 NbS00015932g0108.1 protein AED:0.26 eAED:0.26 QI:0|0.25|0|0.8|0.5|0.4|5|0|272 NbS00014637g0004.1 protein AED:0.07 eAED:0.07 QI:59|0.6|0.66|1|0.8|0.83|6|191|437; (*GB) gi|350539035|ref|NP_001233859.1| (e_value=0.0) aromatic amino acid decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=9e-180) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=5e-154) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g006750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1322952-1326746 transcript_region:SL2.40ch08:1322952..1326746+ go_terms:GO:0030170,GO:0019752 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0030170,GO:0019752 NbS00045136g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.25|0|0.8|0|0|5|0|140; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=6e-50) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=5e-40) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=4e-41) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052530.2.1 (e_value=2e-54) genomic_reference:SL2.40ch07 gene_region:58353195-58354906 transcript_region:SL2.40ch07:58353195..58354906+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00001596g0007.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|356546868|ref|XP_003541844.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100809181, partial [Glycine max];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=2e-39) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=1e-40) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc10g007070.2.1 (e_value=2e-77) genomic_reference:SL2.40ch10 gene_region:1455085-1456837 transcript_region:SL2.40ch10:1455085..1456837- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q30GY4_9SOLN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00001596g0008.1 protein AED:0.30 eAED:0.34 QI:54|0.5|0.6|1|0.5|0.6|5|0|323; (*GB) gi|302142981|emb|CBI20276.3| (e_value=3e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUH3|LAL5_ARATH (e_value=3e-98) MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1;; (*TAIR) AT3G23550.1 (e_value=2e-99) | Symbols: | MATE efflux family protein | chr3:8448435-8450649 REVERSE LENGTH=469;; (*ITAG) Solyc10g007360.2.1 (e_value=2e-162) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00001596g0009.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|0|0|2|0|128; (*GB) gi|302142980|emb|CBI20275.3| (e_value=2e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUH3|LAL5_ARATH (e_value=3e-13) MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1;; (*TAIR) AT3G23550.1 (e_value=2e-14) | Symbols: | MATE efflux family protein | chr3:8448435-8450649 REVERSE LENGTH=469;; (*ITAG) Solyc10g007100.2.1 (e_value=2e-36) genomic_reference:SL2.40ch10 gene_region:1487632-1491802 transcript_region:SL2.40ch10:1487632..1491802- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00007513g0011.1 protein AED:0.08 eAED:0.08 QI:299|0.8|0.83|1|0.4|0.5|6|307|167; (*GB) gi|255568908|ref|XP_002525424.1| (e_value=9e-97) adenylsulfate kinase, putative [Ricinus communis];; (*SWP) sp|Q43295|KAP1_ARATH (e_value=2e-74) Adenylyl-sulfate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=AKN1 PE=1 SV=1;; (*TAIR) AT3G03900.1 (e_value=1e-91) | Symbols: APK3 | adenosine-5'-phosphosulfate (APS) kinase 3 | chr3:1002975-1004271 REVERSE LENGTH=208;; (*ITAG) Solyc10g080680.1.1 (e_value=6e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61217572-61219659 transcript_region:SL2.40ch10:61217572..61219659- go_terms:GO:0000103 functional_description:"Adenylyl-sulfate kinase (AHRD V1 ***- B9SHF5_RICCO); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0000103 NbS00007513g0010.1 protein AED:0.06 eAED:0.12 QI:0|0|0.5|1|1|1|2|0|122; (*GB) gi|225469343|ref|XP_002270086.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100255594 [Vitis vinifera];; (*ITAG) Solyc06g075190.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:43056877-43057164 transcript_region:SL2.40ch06:43056877..43057164+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007513g0004.1 protein AED:0.52 eAED:0.82 QI:0|0|0|0.5|1|1|4|0|87 NbS00005347g0003.1 protein AED:0.18 eAED:0.18 QI:326|1|0.66|1|1|1|3|334|148; (*GB) gi|83283997|gb|ABC01906.1| (e_value=2e-60) unknown [Solanum tuberosum];; (*TAIR) AT1G01490.2 (e_value=8e-22) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc03g007870.2.1 (e_value=1e-61) genomic_reference:SL2.40ch03 gene_region:2399937-2401187 transcript_region:SL2.40ch03:2399937..2401187- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00037609g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|1|1|3|0|390; (*GB) gi|255539763|ref|XP_002510946.1| (e_value=5e-109) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LVA0|BAG7_ARATH (e_value=3e-79) BAG family molecular chaperone regulator 7 OS=Arabidopsis thaliana GN=BAG7 PE=1 SV=1;; (*TAIR) AT5G62390.1 (e_value=3e-80) | Symbols: ATBAG7, BAG7 | BCL-2-associated athanogene 7 | chr5:25052377-25054170 REVERSE LENGTH=446;; (*ITAG) Solyc03g083970.2.1 (e_value=1e-177) genomic_reference:SL2.40ch03 gene_region:47468935-47471771 transcript_region:SL2.40ch03:47468935..47471771- go_terms:GO:0005516 functional_description:"IQ calmodulin-binding motif family protein (AHRD V1 **** B6TKK9_MAIZE)"; GO:0005516 NbS00037609g0001.1 protein AED:0.02 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|255539765|ref|XP_002510947.1| (e_value=1e-32) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g083980.1.1 (e_value=7e-83) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47473609-47474169 transcript_region:SL2.40ch03:47473609..47474169- functional_description:"Unknown Protein (AHRD V1)"; NbS00020273g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|148; (*GB) gi|130840|sp|P29063.1|PR4B_TOBAC (e_value=9e-77) RecName: Full=Pathogenesis-related protein PR-4B; Flags: Precursor;; (*SWP) sp|P29063|PR4B_TOBAC (e_value=3e-78) Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G04720.1 (e_value=2e-58) | Symbols: PR4, HEL, PR-4 | pathogenesis-related 4 | chr3:1285691-1286531 REVERSE LENGTH=212;; (*ITAG) Solyc01g097240.2.1 (e_value=7e-70) genomic_reference:SL2.40ch01 gene_region:79922952-79924628 transcript_region:SL2.40ch01:79922952..79924628- go_terms:GO:0016998,GO:0050832 functional_description:"Pathogenesis-related protein 4B (Fragment) (AHRD V1 **-- Q6LBM4_TOBAC); contains Interpro domain(s) IPR018226 Barwin, conserved site IPR001153 Barwin "; GO:0016998,GO:0050832 NbS00020273g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|225453012|ref|XP_002264376.1| (e_value=6e-49) PREDICTED: PRA1 family protein E [Vitis vinifera];; (*SWP) sp|Q9FRR1|PRA1E_ARATH (e_value=8e-34) PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1;; (*TAIR) AT1G08770.1 (e_value=6e-35) | Symbols: PRA1.E | prenylated RAB acceptor 1.E | chr1:2808933-2809562 FORWARD LENGTH=209;; (*ITAG) Solyc09g066000.1.1 (e_value=2e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:59863414-59863944 transcript_region:SL2.40ch09:59863414..59863944- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00020273g0010.1 protein AED:0.24 eAED:0.24 QI:167|0.81|0.91|1|0.72|0.91|12|182|466; (*GB) gi|34329680|gb|AAQ63971.1| (e_value=0.0) unknown [Nicotiana benthamiana];; (*SWP) sp|Q54KA7|SECG_DICDI (e_value=5e-26) Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1;; (*TAIR) AT3G04710.1 (e_value=6e-178) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1278229-1280942 FORWARD LENGTH=456;; (*ITAG) Solyc01g097190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79885940-79899140 transcript_region:SL2.40ch01:79885940..79899140+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein-like (AHRD V1 ***- Q6K268_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00036051g0003.1 protein AED:0.01 eAED:0.05 QI:0|1|0|1|1|1|2|0|437; (*GB) gi|297740032|emb|CBI30214.3| (e_value=4e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|P20075|LEAD8_DAUCA (e_value=3e-38) Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1;; (*TAIR) AT2G36640.1 (e_value=5e-43) | Symbols: ATECP63, ECP63 | embryonic cell protein 63 | chr2:15357019-15358552 REVERSE LENGTH=448;; (*ITAG) Solyc09g008770.2.1 (e_value=1e-81) genomic_reference:SL2.40ch09 gene_region:2194030-2196459 transcript_region:SL2.40ch09:2194030..2196459+ functional_description:"Group 3 late embryogenesis abundant protein (AHRD V1 **-- Q2N1E0_PHAVU); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00030008g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.78|0.66|0.93|0.78|0.66|15|289|952; (*GB) gi|6685538|sp|Q40554.1|EIF3A_TOBAC (e_value=0.0) RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 large subunit; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=PNLA-35; AltName: Full=eIF-3-theta;; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=0.0) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1;; (*TAIR) AT4G11420.1 (e_value=0.0) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987;; (*ITAG) Solyc10g084670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63434821-63441149 transcript_region:SL2.40ch10:63434821..63441149+ functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- C0H9S0_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbS00007436g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|556; (*GB) gi|255579246|ref|XP_002530469.1| (e_value=1e-156) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q6WWW3|S38A6_RAT (e_value=2e-18) Probable sodium-coupled neutral amino acid transporter 6 OS=Rattus norvegicus GN=Slc38a6 PE=2 SV=1;; (*TAIR) AT1G80510.1 (e_value=4e-149) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=3e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00007436g0024.1 protein AED:0.16 eAED:0.16 QI:167|0.6|0.5|1|0.4|0.5|6|636|281; (*GB) gi|225432181|ref|XP_002268657.1| (e_value=2e-155) PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=3e-144) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=2e-145) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00007436g0006.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|147775996|emb|CAN69081.1| (e_value=2e-58) hypothetical protein VITISV_014064 [Vitis vinifera];; (*TAIR) AT1G80520.1 (e_value=2e-44) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:30276481-30277059 FORWARD LENGTH=192;; (*ITAG) Solyc03g117310.1.1 (e_value=4e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60531877-60532509 transcript_region:SL2.40ch03:60531877..60532509- functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00007436g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|198; (*GB) gi|255579242|ref|XP_002530467.1| (e_value=5e-72) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G15760.1 (e_value=7e-54) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=202;; (*ITAG) Solyc03g117340.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60543515-60544060 transcript_region:SL2.40ch03:60543515..60544060- functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR)"; NbS00007436g0026.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|1|1|3|0|459; (*GB) gi|359484689|ref|XP_002268798.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera];; (*TAIR) AT1G80530.1 (e_value=2e-172) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc03g117300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60527438-60531300 transcript_region:SL2.40ch03:60527438..60531300+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00007436g0022.1 protein AED:0.27 eAED:0.27 QI:17|0.88|0.8|1|0.88|0.8|10|802|436; (*GB) gi|356572846|ref|XP_003554576.1| (e_value=0.0) PREDICTED: bifunctional aminoacyl-tRNA synthetase-like [Glycine max];; (*SWP) sp|O60155|YHY6_SCHPO (e_value=0.0) Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=2 SV=1;; (*TAIR) AT3G62120.2 (e_value=0.0) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001227-23003849 REVERSE LENGTH=530;; (*ITAG) Solyc06g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00014562g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|1118; (*GB) gi|147766422|emb|CAN73805.1| (e_value=0.0) hypothetical protein VITISV_031044 [Vitis vinifera];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=0.0) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc09g091400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66031095-66035023 transcript_region:SL2.40ch09:66031095..66035023- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00034021g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|224137628|ref|XP_002327173.1| (e_value=1e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W3M4|Y4744_ARATH (e_value=2e-130) Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1;; (*TAIR) AT4G06744.1 (e_value=2e-131) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:4070870-4072084 REVERSE LENGTH=404;; (*ITAG) Solyc04g078560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60858151-60859305 transcript_region:SL2.40ch04:60858151..60859305+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00034021g0008.1 protein AED:0.26 eAED:0.26 QI:15|0.57|0.5|1|0.71|0.62|8|334|632; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=3e-164) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=5e-14) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT5G42940.1 (e_value=3e-74) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc04g078680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60972448-60976501 transcript_region:SL2.40ch04:60972448..60976501+ go_terms:GO:0031177,GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0031177,GO:0008270 NbS00029224g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|225455171|ref|XP_002268733.1| (e_value=3e-20) PREDICTED: uncharacterized protein LOC100253810 [Vitis vinifera];; (*TAIR) AT3G61980.1 (e_value=9e-21) | Symbols: | serine protease inhibitor, Kazal-type family protein | chr3:22956344-22956697 REVERSE LENGTH=117;; (*ITAG) Solyc03g080040.1.1 (e_value=8e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:45470826-45471218 transcript_region:SL2.40ch03:45470826..45471218+ go_terms:GO:0004867 functional_description:"Serine-type endopeptidase inhibitor (AHRD V1 *-** B6TFT9_MAIZE)"; GO:0004867 NbS00029224g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|661; (*GB) gi|255557152|ref|XP_002519607.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9FHG4|LRKS7_ARATH (e_value=9e-73) Probable L-type lectin-domain containing receptor kinase S.7 OS=Arabidopsis thaliana GN=LECRKS7 PE=2 SV=1;; (*TAIR) AT5G55830.1 (e_value=7e-74) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:22594655-22596700 FORWARD LENGTH=681;; (*ITAG) Solyc03g080060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45489542-45491467 transcript_region:SL2.40ch03:45489542..45491467- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM32_MARPO); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00029224g0002.1 protein AED:0.19 eAED:0.19 QI:582|0.85|0.87|1|1|1|8|526|389; (*GB) gi|225442194|ref|XP_002276800.1| (e_value=3e-164) PREDICTED: stomatin-like protein 2 [Vitis vinifera];; (*SWP) sp|Q99JB2|STML2_MOUSE (e_value=6e-93) Stomatin-like protein 2 OS=Mus musculus GN=Stoml2 PE=1 SV=1;; (*TAIR) AT4G27585.1 (e_value=1e-153) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr4:13766984-13769832 REVERSE LENGTH=411;; (*ITAG) Solyc03g080050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45473113-45480181 transcript_region:SL2.40ch03:45473113..45480181- go_terms:GO:0005102 functional_description:"Band 7 stomatin family protein (AHRD V1 **-- C1MUP6_MICPS); contains Interpro domain(s) IPR001972 Stomatin "; GO:0005102 NbS00025962g0006.1 protein AED:0.10 eAED:0.10 QI:15|0|0|1|0|0|4|0|427; (*GB) gi|302142026|emb|CBI19229.3| (e_value=1e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0PIT9|NNRE_PIG (e_value=1e-66) NAD(P)H-hydrate epimerase OS=Sus scrofa GN=APOA1BP PE=2 SV=1;; (*TAIR) AT5G49970.1 (e_value=3e-163) | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxamine) 5'-phosphate oxidase | chr5:20329213-20332900 FORWARD LENGTH=530;; (*ITAG) Solyc03g113770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57875338-57880089 transcript_region:SL2.40ch03:57875338..57880089- go_terms:GO:0004733 functional_description:"Pyridoxine/pyridoxamine 5&apos-phosphate oxidase (AHRD V1 *-** D7BCS8_MEISD); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0004733 NbS00033935g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.69|1|0.91|0.92|13|0|1007; (*GB) gi|147775817|emb|CAN75924.1| (e_value=0.0) hypothetical protein VITISV_029516 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=4e-86) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT5G66310.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063;; (*ITAG) Solyc02g062330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:28520744-28525737 transcript_region:SL2.40ch02:28520744..28525737- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00033935g0011.1 protein AED:0.29 eAED:0.33 QI:0|0.5|0|1|0.5|0.33|3|0|114; (*GB) gi|52851178|emb|CAH58637.1| (e_value=2e-34) vacuolar H+-ATPase C subunit [Plantago major];; (*SWP) sp|Q43434|VATL_GOSHI (e_value=5e-36) V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=9e-37) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc04g081090.2.1 (e_value=1e-37) genomic_reference:SL2.40ch04 gene_region:62728330-62730536 transcript_region:SL2.40ch04:62728330..62730536- go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00024009g0010.1 protein AED:0.10 eAED:0.11 QI:9|0.57|0.25|1|1|0.87|8|0|580; (*GB) gi|255548868|ref|XP_002515490.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G25320.1 (e_value=0.0) | Symbols: | ACT-like superfamily protein | chr5:8787403-8789530 REVERSE LENGTH=500;; (*ITAG) Solyc06g011520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:7974245-7977278 transcript_region:SL2.40ch06:7974245..7977278- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00024009g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|84873488|gb|ABC67804.1| (e_value=0.0) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=0.0) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00024009g0001.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|0|0|2|84|148; (*GB) gi|84873488|gb|ABC67804.1| (e_value=2e-88) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=4e-65) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=3e-66) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=8e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00026544g0001.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|548746|sp|P36688.1|RK12_NICSY (e_value=5e-67) RecName: Full=50S ribosomal protein L12, chloroplastic; AltName: Full=CL12; Flags: Precursor;; (*SWP) sp|P36688|RK12_NICSY (e_value=2e-68) 50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G27830.1 (e_value=2e-40) | Symbols: RPL12-A, RPL12 | ribosomal protein L12-A | chr3:10318576-10319151 FORWARD LENGTH=191;; (*ITAG) Solyc02g086730.1.1 (e_value=8e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43937531-43938103 transcript_region:SL2.40ch02:43937531..43938103+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-C (AHRD V1 ***- Q8LBJ7_ARATH); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00026544g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|255567345|ref|XP_002524652.1| (e_value=2e-24) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g062840.1.1 (e_value=4e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53288619-53289059 transcript_region:SL2.40ch12:53288619..53289059+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026544g0009.1 protein AED:0.13 eAED:0.13 QI:162|1|1|1|1|1|4|273|176; (*GB) gi|365222940|gb|AEW69822.1| (e_value=7e-118) Hop-interacting protein THI141 [Solanum lycopersicum];; (*SWP) sp|Q8LGG8|USPAL_ARATH (e_value=6e-92) Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2;; (*TAIR) AT5G14680.1 (e_value=8e-104) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:4731620-4733025 REVERSE LENGTH=175;; (*ITAG) Solyc12g062860.1.1 (e_value=1e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:53479439-53487641 transcript_region:SL2.40ch12:53479439..53487641+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 **-- D7M6L9_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00016479g0014.1 protein AED:0.00 eAED:0.00 QI:133|1|0.5|1|1|1|2|0|356; (*GB) gi|225437553|ref|XP_002276165.1| (e_value=0.0) PREDICTED: probable dimethyladenosine transferase-like [Vitis vinifera];; (*SWP) sp|Q9D0D4|DIM1_MOUSE (e_value=3e-126) Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1;; (*TAIR) AT2G47420.1 (e_value=4e-177) | Symbols: | Ribosomal RNA adenine dimethylase family protein | chr2:19457574-19458777 FORWARD LENGTH=353;; (*ITAG) Solyc01g100430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82216295-82219335 transcript_region:SL2.40ch01:82216295..82219335- go_terms:GO:0000154,GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 ***- RSMA_CYAP8); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000154,GO:0006364 NbS00016479g0016.1 protein AED:0.13 eAED:0.21 QI:0|0.66|0.25|1|0.66|0.5|4|0|382; (*GB) gi|147839799|emb|CAN72622.1| (e_value=1e-60) hypothetical protein VITISV_030283 [Vitis vinifera];; (*TAIR) AT2G24100.1 (e_value=2e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466;; (*ITAG) Solyc01g100440.1.1 (e_value=2e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82221086-82224114 transcript_region:SL2.40ch01:82221086..82224114- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00016479g0018.1 protein AED:0.09 eAED:0.09 QI:253|0.83|0.85|1|0.83|0.85|7|401|490; (*GB) gi|296089769|emb|CBI39588.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2W3F8|RF2_MAGSA (e_value=9e-112) Peptide chain release factor 2 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=prfB PE=3 SV=1;; (*TAIR) AT1G56350.1 (e_value=0.0) | Symbols: | Peptide chain release factor 2 | chr1:21094840-21097826 FORWARD LENGTH=482;; (*ITAG) Solyc01g100420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82211250-82215734 transcript_region:SL2.40ch01:82211250..82215734+ go_terms:GO:0005737,GO:0006415 functional_description:"Peptide chain release factor 2 (AHRD V1 ***- B6SY98_MAIZE); contains Interpro domain(s) IPR004374 Peptide chain release factor 2 "; GO:0005737,GO:0006415 NbS00016479g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|168; (*GB) gi|225438448|ref|XP_002277084.1| (e_value=2e-79) PREDICTED: 60S ribosomal protein L19, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9Y3B7|RM11_HUMAN (e_value=4e-27) 39S ribosomal protein L11, mitochondrial OS=Homo sapiens GN=MRPL11 PE=1 SV=1;; (*TAIR) AT4G35490.1 (e_value=4e-71) | Symbols: MRPL11 | mitochondrial ribosomal protein L11 | chr4:16855918-16856385 FORWARD LENGTH=155;; (*ITAG) Solyc02g082500.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40772013-40772480 transcript_region:SL2.40ch02:40772013..40772480+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B4FC48_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "; GO:0003735,GO:0005515 NbS00016479g0001.1 protein AED:0.21 eAED:0.33 QI:0|0|0|0.75|1|1|4|0|343; (*GB) gi|296082558|emb|CBI21563.3| (e_value=1e-100) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G38250.1 (e_value=3e-55) | Symbols: | Transmembrane amino acid transporter family protein | chr4:17935533-17936843 FORWARD LENGTH=436;; (*ITAG) Solyc03g032090.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8889972-8891255 transcript_region:SL2.40ch03:8889972..8891255+ go_terms:GO:0015187 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015187 NbS00051768g0005.1 protein AED:0.24 eAED:0.24 QI:410|0.89|0.9|1|0.94|0.95|20|403|613; (*GB) gi|350537129|ref|NP_001234281.1| (e_value=0.0) vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum];; (*SWP) sp|P09469|VATA_DAUCA (e_value=0.0) V-type proton ATPase catalytic subunit A OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G78900.2 (e_value=0.0) | Symbols: VHA-A | vacuolar ATP synthase subunit A | chr1:29660463-29664575 FORWARD LENGTH=623;; (*ITAG) Solyc12g055800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47132031-47139706 transcript_region:SL2.40ch12:47132031..47139706- go_terms:GO:0046961 functional_description:"V-type ATP synthase alpha chain (AHRD V1 ***- VATA_METTH); contains Interpro domain(s) IPR005725 ATPase, V1 complex, subunit A "; GO:0046961 NbS00037455g0107.1 protein AED:0.19 eAED:0.19 QI:173|1|1|1|0.7|0.63|11|168|257 NbS00032216g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.64|0.53|1|0.92|0.86|15|159|1209; (*GB) gi|224117318|ref|XP_002317540.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81833|SD11_ARATH (e_value=5e-141) G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1;; (*TAIR) AT4G27300.1 (e_value=4e-142) | Symbols: | S-locus lectin protein kinase family protein | chr4:13669308-13672348 REVERSE LENGTH=815;; (*ITAG) Solyc07g063710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63320710-63324451 transcript_region:SL2.40ch07:63320710..63324451- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00005683g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.8|1|0.25|0.2|5|87|553; (*GB) gi|28273100|dbj|BAC56916.1| (e_value=0.0) nitrate transporter [Nicotiana tabacum];; (*SWP) sp|Q05085|PTR7_ARATH (e_value=0.0) Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1;; (*TAIR) AT1G12110.1 (e_value=0.0) | Symbols: NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | nitrate transporter 1.1 | chr1:4105341-4109290 FORWARD LENGTH=590;; (*ITAG) Solyc08g007430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1993266-1997895 transcript_region:SL2.40ch08:1993266..1997895+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q852P5_TOBAC); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00006996g0012.1 protein AED:0.01 eAED:0.01 QI:13|1|1|1|0.66|0.57|7|192|249; (*GB) gi|82623405|gb|ABB87117.1| (e_value=1e-145) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=6e-137) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT5G10360.1 (e_value=9e-138) | Symbols: EMB3010, RPS6B | Ribosomal protein S6e | chr5:3258734-3260142 REVERSE LENGTH=249;; (*ITAG) Solyc08g074240.2.1 (e_value=3e-148) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00006996g0013.1 protein AED:0.38 eAED:0.44 QI:215|0.62|0.44|1|0.5|0.66|9|0|210; (*GB) gi|357465995|ref|XP_003603282.1| (e_value=8e-96) hypothetical protein MTR_3g105880 [Medicago truncatula];; (*SWP) sp|Q9SZ53|P2C60_ARATH (e_value=5e-93) Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1;; (*TAIR) AT4G31860.1 (e_value=4e-94) | Symbols: | Protein phosphatase 2C family protein | chr4:15406685-15408589 REVERSE LENGTH=357;; (*ITAG) Solyc08g006060.2.1 (e_value=2e-99) genomic_reference:SL2.40ch08 gene_region:807001-823843 transcript_region:SL2.40ch08:807001..823843- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- C9E7A0_9CILI); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00021233g0006.1 protein AED:0.17 eAED:0.19 QI:628|0.73|0.75|1|0.73|0.7|20|344|983; (*GB) gi|359496488|ref|XP_003635247.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854867 [Vitis vinifera];; (*SWP) sp|P97868|RBBP6_MOUSE (e_value=3e-20) E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5;; (*TAIR) AT5G47430.1 (e_value=0.0) | Symbols: | DWNN domain, a CCHC-type zinc finger | chr5:19235819-19240596 REVERSE LENGTH=892;; (*ITAG) Solyc10g083150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62336627-62344862 transcript_region:SL2.40ch10:62336627..62344862- go_terms:GO:0005634,GO:0000151 functional_description:"Retinoblastoma-binding protein 6 (Fragment) (AHRD V1 *--- C7TZR6_SCHJA); contains Interpro domain(s) IPR014891 DWNN domain "; GO:0005634,GO:0000151 NbS00021233g0007.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|1|1|2|0|178; (*ITAG) Solyc10g049530.1.1 (e_value=8e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00021233g0008.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0.5|2|0|63 NbS00034921g0005.1 protein AED:0.11 eAED:0.11 QI:35|0.33|0.25|1|0.33|0.25|4|0|216; (*GB) gi|356504894|ref|XP_003521229.1| (e_value=2e-46) PREDICTED: histone H2AX-like [Glycine max];; (*SWP) sp|O04848|H2AXA_ARATH (e_value=1e-44) Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1;; (*TAIR) AT1G08880.1 (e_value=1e-45) | Symbols: HTA5, H2AXA, G-H2AX, GAMMA-H2AX | Histone superfamily protein | chr1:2847144-2847676 REVERSE LENGTH=142;; (*ITAG) Solyc09g082710.2.1 (e_value=3e-46) genomic_reference:SL2.40ch09 gene_region:63814378-63815336 transcript_region:SL2.40ch09:63814378..63815336- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- B9MZP0_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00013826g0003.1 protein AED:0.02 eAED:0.02 QI:41|1|1|1|0.75|0.6|5|288|355; (*GB) gi|357467173|ref|XP_003603871.1| (e_value=0.0) Cysteine proteinase [Medicago truncatula];; (*SWP) sp|O65493|XCP1_ARATH (e_value=0.0) Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1;; (*TAIR) AT4G35350.1 (e_value=0.0) | Symbols: XCP1 | xylem cysteine peptidase 1 | chr4:16810529-16811875 FORWARD LENGTH=355;; (*ITAG) Solyc12g094700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63186285-63189004 transcript_region:SL2.40ch12:63186285..63189004+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00017492g0018.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|0.5|0.33|3|0|347; (*GB) gi|40949663|gb|AAR97545.1| (e_value=1e-76) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=8e-73) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=2e-71) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102400.2.1 (e_value=6e-76) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00017492g0017.1 protein AED:0.18 eAED:0.18 QI:276|0.93|0.94|1|0.81|0.88|17|206|391; (*GB) gi|359487708|ref|XP_002278964.2| (e_value=0.0) PREDICTED: flap endonuclease 1-like [Vitis vinifera];; (*SWP) sp|O65251|FEN1_ARATH (e_value=0.0) Flap endonuclease 1 OS=Arabidopsis thaliana GN=FEN1 PE=2 SV=2;; (*TAIR) AT5G26680.2 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383;; (*ITAG) Solyc01g102370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82961683-82969941 transcript_region:SL2.40ch01:82961683..82969941+ go_terms:GO:0017108 functional_description:"Flap structure specific endonuclease 1 (AHRD V1 **** Q6DRB5_DANRE); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0017108 NbS00017492g0013.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|1|1|4|0|128 NbS00017492g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.66|0.83|1|1|6|0|627; (*GB) gi|225450417|ref|XP_002276071.1| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=3e-134) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=2e-135) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g102360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82955828-82958426 transcript_region:SL2.40ch01:82955828..82958426- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00017492g0020.1 protein AED:0.24 eAED:0.24 QI:72|0|0|1|0|0.33|3|0|306; (*GB) gi|357117719|ref|XP_003560610.1| (e_value=2e-25) PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon];; (*TAIR) AT4G38180.1 (e_value=2e-11) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc03g044690.1.1 (e_value=2e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14328670-14329779 transcript_region:SL2.40ch03:14328670..14329779+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00021051g0003.1 protein AED:0.26 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|433; (*GB) gi|225435706|ref|XP_002283484.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At1g55270 [Vitis vinifera];; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=0.0) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:642518-647246 transcript_region:SL2.40ch01:642518..647246+ go_terms:GO:0003779 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_PONAB); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0003779 NbS00050746g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|230; (*GB) gi|255585507|ref|XP_002533445.1| (e_value=2e-104) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=2e-86) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=2e-87) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=3e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00050746g0004.1 protein AED:0.74 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|287; (*GB) gi|225433874|ref|XP_002264936.1| (e_value=9e-29) PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=4e-27) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=3e-28) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=8e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00050746g0011.1 protein AED:0.34 eAED:0.38 QI:0|0.7|0.63|0.90|0.9|0.81|11|522|318; (*GB) gi|170676822|gb|ACB30546.1| (e_value=3e-155) putative lysophosphatidic acid acyltransferase [Ricinus communis];; (*SWP) sp|Q8C0N2|GPAT3_MOUSE (e_value=1e-66) Glycerol-3-phosphate acyltransferase 3 OS=Mus musculus GN=Agpat9 PE=1 SV=1;; (*TAIR) AT5G60620.1 (e_value=5e-151) | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase 9 | chr5:24367266-24369647 FORWARD LENGTH=376;; (*ITAG) Solyc08g082340.2.1 (e_value=4e-160) genomic_reference:SL2.40ch08 gene_region:62324773-62331770 transcript_region:SL2.40ch08:62324773..62331770+ go_terms:GO:0004366,GO:0005515 functional_description:"Glycerol-3-phosphate acyltransferase 3 (AHRD V1 **** GPAT3_HUMAN); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0005515 NbS00038466g0006.1 protein AED:0.07 eAED:0.13 QI:0|0.66|0.42|1|0.66|0.85|7|0|880; (*GB) gi|359484155|ref|XP_002272509.2| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase SD1-8-like [Vitis vinifera];; (*SWP) sp|O81905|SD18_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=0.0) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc05g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2684709-2689587 transcript_region:SL2.40ch05:2684709..2689587- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00061062g0001.1 protein AED:0.15 eAED:0.83 QI:0|0|0.5|1|0|0.5|2|89|114; (*ITAG) Solyc07g006690.2.1 (e_value=1e-52) genomic_reference:SL2.40ch07 gene_region:1547767-1557882 transcript_region:SL2.40ch07:1547767..1557882- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbS00031747g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|52547872|gb|AAU81956.1| (e_value=2e-37) ERF transcription factor 5 [Nicotiana tabacum];; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=1e-36) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=9e-38) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc11g011750.1.1 (e_value=6e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4727655-4728155 transcript_region:SL2.40ch11:4727655..4728155+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018153g0004.1 protein AED:0.24 eAED:0.26 QI:412|0.2|0.16|1|0|0.16|6|0|270; (*GB) gi|115478855|ref|NP_001063021.1| (e_value=2e-51) Os09g0371300 [Oryza sativa Japonica Group];; (*TAIR) AT1G78130.1 (e_value=8e-36) | Symbols: UNE2 | Major facilitator superfamily protein | chr1:29400171-29401814 FORWARD LENGTH=490;; (*ITAG) Solyc04g073960.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:57582445-57585687 transcript_region:SL2.40ch04:57582445..57585687+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily transporter (AHRD V1 *--- Q2NDT2_ERYLH); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00034975g0008.1 protein AED:0.17 eAED:0.18 QI:0|0.28|0|1|0.85|0.75|8|0|859; (*GB) gi|147810056|emb|CAN78279.1| (e_value=2e-143) hypothetical protein VITISV_021648 [Vitis vinifera];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=8e-63) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=6e-64) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc04g079510.1.1 (e_value=6e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61551102-61553267 transcript_region:SL2.40ch04:61551102..61553267+ go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00034975g0009.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|0.5|0.66|3|0|412; (*GB) gi|255538440|ref|XP_002510285.1| (e_value=2e-94) signal peptidase I, putative [Ricinus communis];; (*TAIR) AT1G47310.1 (e_value=3e-82) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17343082-17344618 FORWARD LENGTH=395;; (*ITAG) Solyc04g079540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61561529-61564908 transcript_region:SL2.40ch04:61561529..61564908- functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00028734g0018.1 protein AED:0.18 eAED:0.20 QI:185|0.33|0.25|1|0.33|0.5|4|0|534; (*GB) gi|356528218|ref|XP_003532702.1| (e_value=0.0) PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase-like [Glycine max];; (*SWP) sp|O80505|ALG8_ARATH (e_value=0.0) Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana GN=At2g44660 PE=2 SV=3;; (*TAIR) AT2G44660.1 (e_value=0.0) | Symbols: | ALG6, ALG8 glycosyltransferase family | chr2:18420832-18422827 REVERSE LENGTH=506;; (*ITAG) Solyc01g088650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75173809-75178276 transcript_region:SL2.40ch01:75173809..75178276- go_terms:GO:0042283,GO:0000033 functional_description:"Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1 3-glucosyltransferase (AHRD V1 **** C5FMG1_NANOT); contains Interpro domain(s) IPR004856 Glycosyltransferase, ALG6/ALG8 "; GO:0042283,GO:0000033 NbS00028734g0014.1 protein AED:0.27 eAED:0.27 QI:0|1|0.83|1|1|0.83|6|482|465; (*GB) gi|255583480|ref|XP_002532498.1| (e_value=7e-97) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q7T037|RF12B_XENLA (e_value=5e-13) E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1;; (*TAIR) AT5G45290.1 (e_value=2e-35) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=545;; (*ITAG) Solyc01g088640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75165095-75171511 transcript_region:SL2.40ch01:75165095..75171511- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00028734g0015.1 protein AED:0.68 eAED:0.77 QI:0|0.5|0.28|0.71|1|1|7|0|135; (*GB) gi|225453275|ref|XP_002267346.1| (e_value=2e-72) PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera];; (*TAIR) AT3G60210.1 (e_value=7e-66) | Symbols: | GroES-like family protein | chr3:22251443-22252709 REVERSE LENGTH=138;; (*ITAG) Solyc01g088610.2.1 (e_value=6e-90) genomic_reference:SL2.40ch01 gene_region:75132658-75135971 transcript_region:SL2.40ch01:75132658..75135971- functional_description:"chaperonin (AHRD V1 ***- B5IMI3_9CHRO); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 "; NbS00028734g0016.1 protein AED:0.01 eAED:0.01 QI:219|1|1|1|1|1|2|22|230; (*GB) gi|297734664|emb|CBI16715.3| (e_value=2e-98) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G02180.1 (e_value=1e-76) | Symbols: | ferredoxin-related | chr1:413619-414505 REVERSE LENGTH=226;; (*ITAG) Solyc01g088620.2.1 (e_value=2e-133) genomic_reference:SL2.40ch01 gene_region:75136486-75139507 transcript_region:SL2.40ch01:75136486..75139507+ functional_description:"Ferredoxin-like (AHRD V1 ***- Q6EP30_ORYSJ)"; NbS00028734g0022.1 protein AED:0.31 eAED:0.31 QI:0|0.6|0.33|1|0.8|0.83|6|0|442; (*GB) gi|225453254|ref|XP_002265990.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256535 [Vitis vinifera];; (*TAIR) AT2G44640.1 (e_value=1e-154) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:18417286-18419063 FORWARD LENGTH=451;; (*ITAG) Solyc01g088600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75126461-75132206 transcript_region:SL2.40ch01:75126461..75132206+ functional_description:"PDE320 (AHRD V1 ***- D7L613_ARALY)"; NbS00005183g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0.83|1|0.8|0.66|6|104|751; (*GB) gi|255564824|ref|XP_002523406.1| (e_value=0.0) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LVC3|PUM12_ARATH (e_value=8e-149) Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2;; (*TAIR) AT5G56510.1 (e_value=6e-150) | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=596;; (*ITAG) Solyc01g028800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:33225332-33229037 transcript_region:SL2.40ch01:33225332..33229037- go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio-family RNA binding protein (AHRD V1 *-*- A8N273_COPC7); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00005183g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.69|0.57|0.92|1|1|14|0|607; (*GB) gi|1762130|gb|AAB39827.1| (e_value=0.0) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|P08927|RUBB_PEA (e_value=0.0) RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2;; (*TAIR) AT3G13470.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00005183g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.5|1|1|1|6|0|394; (*GB) gi|255564816|ref|XP_002523402.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9FM85|Y5564_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=1 SV=1;; (*TAIR) AT5G56460.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:22865509-22867866 FORWARD LENGTH=408;; (*ITAG) Solyc01g028830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33505886-33509708 transcript_region:SL2.40ch01:33505886..33509708- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00036474g0002.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|307; (*GB) gi|224069778|ref|XP_002303037.1| (e_value=4e-33) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g061240.1.1 (e_value=4e-120) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:53982272-53983159 transcript_region:SL2.40ch09:53982272..53983159+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036474g0001.1 protein AED:0.25 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|1345882|sp|P49098.1|CYB5_TOBAC (e_value=2e-54) RecName: Full=Cytochrome b5;; (*SWP) sp|P49098|CYB5_TOBAC (e_value=6e-56) Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=3e-43) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc09g061230.2.1 (e_value=3e-55) genomic_reference:SL2.40ch09 gene_region:53978084-53981055 transcript_region:SL2.40ch09:53978084..53981055+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** Q9ZWT2_ARATH); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00036474g0007.1 protein AED:0.04 eAED:0.07 QI:0|0.75|0.8|1|0.5|0.8|5|0|602; (*GB) gi|255560161|ref|XP_002521098.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FKB6|Y5880_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1;; (*TAIR) AT5G48800.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19786881-19789003 FORWARD LENGTH=614;; (*ITAG) Solyc09g061250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53983844-53986396 transcript_region:SL2.40ch09:53983844..53986396- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00029202g0004.1 protein AED:0.19 eAED:0.19 QI:226|1|1|1|0.88|0.8|10|242|529; (*GB) gi|255585735|ref|XP_002533549.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT3G52870.1 (e_value=7e-180) | Symbols: | IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456;; (*ITAG) Solyc09g009770.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3250283-3254099 transcript_region:SL2.40ch09:3250283..3254099- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **** B6SL12_MAIZE)"; GO:0005516 NbS00041471g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041471g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|162; (*GB) gi|356512337|ref|XP_003524876.1| (e_value=3e-36) PREDICTED: uncharacterized protein LOC100788834 [Glycine max];; (*TAIR) AT4G22000.1 (e_value=7e-33) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659810-11660202 REVERSE LENGTH=130;; (*ITAG) Solyc12g042720.1.1 (e_value=1e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43601695-43601952 transcript_region:SL2.40ch12:43601695..43601952+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024006g0011.1 protein AED:0.35 eAED:0.39 QI:93|0.55|0.7|1|0.66|0.8|10|327|334; (*GB) gi|359473684|ref|XP_003631347.1| (e_value=2e-124) PREDICTED: UBX domain-containing protein 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q5REY7|UBXN7_PONAB (e_value=2e-37) UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2;; (*TAIR) AT1G14570.1 (e_value=8e-107) | Symbols: | UBX domain-containing protein | chr1:4983770-4987192 FORWARD LENGTH=468;; (*ITAG) Solyc04g008510.2.1 (e_value=2e-169) genomic_reference:SL2.40ch04 gene_region:2133538-2142268 transcript_region:SL2.40ch04:2133538..2142268+ functional_description:"UBX domain-containing protein (AHRD V1 ***- D7KBM2_ARALY); contains Interpro domain(s) IPR006577 UAS "; NbS00024006g0002.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|0.8|0.83|6|238|400; (*GB) gi|118485779|gb|ABK94738.1| (e_value=2e-155) unknown [Populus trichocarpa];; (*SWP) sp|Q4LDF9|OEP37_PEA (e_value=6e-151) Outer envelope pore protein 37, chloroplastic OS=Pisum sativum GN=OEP37 PE=1 SV=1;; (*TAIR) AT2G43950.1 (e_value=3e-142) | Symbols: OEP37, ATOEP37 | chloroplast outer envelope protein 37 | chr2:18200553-18202644 REVERSE LENGTH=343;; (*ITAG) Solyc04g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2142947-2150143 transcript_region:SL2.40ch04:2142947..2150143- go_terms:GO:0005216 functional_description:"Outer envelope protein (AHRD V1 ***- Q4LDF9_PEA)"; GO:0005216 NbS00024006g0010.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|0|0|2|0|275; (*GB) gi|297738313|emb|CBI27514.3| (e_value=4e-23) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g008500.2.1 (e_value=4e-53) genomic_reference:SL2.40ch04 gene_region:2123723-2129872 transcript_region:SL2.40ch04:2123723..2129872+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU0_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00017314g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|116778782|gb|ABK20993.1| (e_value=7e-95) unknown [Picea sitchensis];; (*SWP) sp|P46293|RS16_GOSHI (e_value=2e-93) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=6e-93) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc04g026100.1.1 (e_value=9e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:24590324-24590767 transcript_region:SL2.40ch04:24590324..24590767+ go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00017314g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.57|0.25|1|0.42|0.5|8|529|475; (*GB) gi|255544041|ref|XP_002513083.1| (e_value=4e-165) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q06538|YL241_YEAST (e_value=2e-12) Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1;; (*TAIR) AT3G54510.1 (e_value=2e-150) | Symbols: | Early-responsive to dehydration stress protein (ERD4) | chr3:20180689-20183220 FORWARD LENGTH=617;; (*ITAG) Solyc01g068500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70131982-70142492 transcript_region:SL2.40ch01:70131982..70142492+ go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00031638g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.42|1|0.5|0.42|7|0|316; (*GB) gi|147778660|emb|CAN71720.1| (e_value=1e-84) hypothetical protein VITISV_034107 [Vitis vinifera];; (*TAIR) AT1G70260.1 (e_value=6e-79) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:26457067-26459338 REVERSE LENGTH=375;; (*ITAG) Solyc04g025750.2.1 (e_value=9e-170) genomic_reference:SL2.40ch04 gene_region:22325747-22328161 transcript_region:SL2.40ch04:22325747..22328161- go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7KXZ8_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00057725g0003.1 protein AED:0.06 eAED:0.06 QI:426|0.4|0.33|0.66|0.8|0.66|6|0|236; (*GB) gi|359476779|ref|XP_002278934.2| (e_value=9e-103) PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SWF9|ZFNL_PEA (e_value=3e-90) Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G02830.1 (e_value=4e-61) | Symbols: ZFN1 | zinc finger protein 1 | chr3:614075-615916 FORWARD LENGTH=397;; (*ITAG) Solyc11g008900.1.1 (e_value=4e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3068520-3076321 transcript_region:SL2.40ch11:3068520..3076321+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00043027g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0.33|0.25|4|0|451; (*GB) gi|225456581|ref|XP_002265588.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100263840 [Vitis vinifera];; (*TAIR) AT3G29760.1 (e_value=2e-24) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:11590064-11591833 REVERSE LENGTH=465;; (*ITAG) Solyc02g065790.2.1 (e_value=7e-77) genomic_reference:SL2.40ch02 gene_region:31507421-31512311 transcript_region:SL2.40ch02:31507421..31512311+ functional_description:"Phosphoprotein phosphatase (AHRD V1 *--- B6K603_SCHJY); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00025985g0003.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|296087771|emb|CBI35027.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LRW1|LBD22_ARATH (e_value=1e-26) LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1;; (*TAIR) AT3G13850.1 (e_value=1e-27) | Symbols: LBD22 | LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268;; (*ITAG) Solyc09g014700.1.1 (e_value=3e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:6708363-6711119 transcript_region:SL2.40ch09:6708363..6711119+ functional_description:"LOB domain family protein (AHRD V1 ***- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00006346g0003.1 protein AED:0.13 eAED:0.13 QI:142|1|1|1|0.91|0.92|13|111|654; (*GB) gi|297739187|emb|CBI28838.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8C156|CND2_MOUSE (e_value=2e-22) Condensin complex subunit 2 OS=Mus musculus GN=Ncaph PE=2 SV=1;; (*TAIR) AT2G32590.1 (e_value=0.0) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). | chr2:13829420-13833209 REVERSE LENGTH=671;; (*ITAG) Solyc07g049680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57358325-57364429 transcript_region:SL2.40ch07:57358325..57364429+ go_terms:GO:0005515 functional_description:"Condensin complex subunit 2 (AHRD V1 ***- Q564K3_ARATH); contains Interpro domain(s) IPR008418 Barren "; GO:0005515 NbS00006346g0005.1 protein AED:0.20 eAED:0.37 QI:0|0|0|1|0|0|3|0|148; (*GB) gi|11466000|ref|NP_054542.1| (e_value=3e-38) Ycf2 [Nicotiana tabacum];; (*SWP) sp|P09976|YCF2_TOBAC (e_value=9e-40) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=8e-36) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00007173g0004.1 protein AED:0.17 eAED:0.17 QI:140|0.77|0.6|1|0.66|0.8|10|346|411; (*GB) gi|224103853|ref|XP_002313220.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944L7|Y1480_ARATH (e_value=4e-57) Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1;; (*TAIR) AT1G07010.2 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:2152949-2154968 FORWARD LENGTH=385;; (*ITAG) Solyc06g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44450038-44454193 transcript_region:SL2.40ch06:44450038..44454193+ go_terms:GO:0004722 functional_description:"Serine-threonine protein phosphatase (AHRD V1 **-* Q5CPY7_CRYPV); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00007173g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|3|0|156; (*GB) gi|255584675|ref|XP_002533060.1| (e_value=2e-30) dopamine beta-monooxygenase, putative [Ricinus communis];; (*TAIR) AT5G47530.1 (e_value=6e-32) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc02g063470.1.1 (e_value=6e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30137899-30138993 transcript_region:SL2.40ch02:30137899..30138993+ functional_description:"Dopamine beta-monooxygenase (AHRD V1 *--- B6SK92_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00031956g0002.1 protein AED:0.19 eAED:0.33 QI:0|0|0|0.5|1|0|2|0|96; (*ITAG) Solyc04g007350.2.1 (e_value=1e-14) genomic_reference:SL2.40ch04 gene_region:1056015-1057246 transcript_region:SL2.40ch04:1056015..1057246- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00000547g0012.1 protein AED:0.28 eAED:0.28 QI:245|1|0.75|1|0|0.25|4|0|118; (*GB) gi|147860148|emb|CAN78724.1| (e_value=1e-68) hypothetical protein VITISV_020007 [Vitis vinifera];; (*SWP) sp|Q9C540|ACFR4_ARATH (e_value=1e-63) Probable transmembrane ascorbate ferrireductase 4 OS=Arabidopsis thaliana GN=CYB561D PE=2 SV=1;; (*TAIR) AT1G26100.1 (e_value=9e-65) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr1:9022716-9024081 REVERSE LENGTH=236;; (*ITAG) Solyc05g009950.2.1 (e_value=3e-80) genomic_reference:SL2.40ch05 gene_region:4164685-4168099 transcript_region:SL2.40ch05:4164685..4168099- go_terms:GO:0000293 functional_description:"Cytochrome B561 family protein (AHRD V1 ***- D7KQT9_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0000293 NbS00000547g0010.1 protein AED:0.19 eAED:0.45 QI:61|0|0|1|0|0|3|0|88 NbS00000666g0010.1 protein AED:0.26 eAED:0.26 QI:158|0.87|0.77|1|0.87|0.77|9|349|331; (*GB) gi|359486525|ref|XP_002264331.2| (e_value=6e-117) PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera];; (*SWP) sp|Q9UNW9|NOVA2_HUMAN (e_value=1e-12) RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1;; (*TAIR) AT5G04430.1 (e_value=2e-106) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc05g055450.2.1 (e_value=3e-171) genomic_reference:SL2.40ch05 gene_region:64240601-64247033 transcript_region:SL2.40ch05:64240601..64247033+ go_terms:GO:0003727 functional_description:"PolyrC-binding protein 2 (AHRD V1 **** B5X4N2_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003727 NbS00000666g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.8|0.83|6|380|542; (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=0.0) nam-like protein 9 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-130) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=1e-131) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc05g055470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64249833-64254800 transcript_region:SL2.40ch05:64249833..64254800- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00000666g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|82400146|gb|ABB72812.1| (e_value=5e-61) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-62) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=5e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00001430g0008.1 protein AED:0.51 eAED:0.89 QI:0|0|0|0.4|1|0.6|5|0|101 NbS00001430g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|350276084|dbj|BAL03610.1| (e_value=0.0) CBL-interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q7X996|CIPK2_ORYSJ (e_value=0.0) CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1;; (*TAIR) AT5G58380.1 (e_value=0.0) | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting protein 1 | chr5:23597092-23598531 REVERSE LENGTH=479;; (*ITAG) Solyc06g050300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:29366408-29367733 transcript_region:SL2.40ch06:29366408..29367733- go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 13 (AHRD V1 **** C4P7W2_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00001430g0010.1 protein AED:0.82 eAED:0.88 QI:0|0|0|0.66|1|1|3|0|226; (*GB) gi|350276084|dbj|BAL03610.1| (e_value=2e-14) CBL-interacting protein kinase [Solanum lycopersicum];; (*TAIR) AT5G45820.1 (e_value=1e-12) | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting protein kinase 20 | chr5:18587081-18588400 REVERSE LENGTH=439;; (*ITAG) Solyc05g052270.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61678974-61680296 transcript_region:SL2.40ch05:61678974..61680296- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 13 (AHRD V1 **** C4P7W2_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00002455g0005.1 protein AED:0.07 eAED:0.08 QI:0|0.87|0.76|1|0.81|0.76|17|0|1428; (*GB) gi|359475278|ref|XP_003631632.1| (e_value=0.0) PREDICTED: phosphatidylinositol 4-kinase alpha-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=0.0) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=0.0) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043130.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:34865935-34882372 transcript_region:SL2.40ch11:34865935..34882372- go_terms:GO:0048015 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 ***- D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0048015 NbS00014079g0007.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|0.5|0.66|3|345|348; (*GB) gi|224062866|ref|XP_002300909.1| (e_value=2e-180) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYS8|ZDH24_ARATH (e_value=2e-133) Probable S-acyltransferase At5g50020 OS=Arabidopsis thaliana GN=At5g50020 PE=1 SV=1;; (*TAIR) AT5G50020.2 (e_value=5e-141) | Symbols: | DHHC-type zinc finger family protein | chr5:20351210-20354124 FORWARD LENGTH=444;; (*ITAG) Solyc04g071860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56452439-56466548 transcript_region:SL2.40ch04:56452439..56466548- go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase AKR1 (AHRD V1 *-*- AKR1_CRYNE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00014079g0006.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|2|0|239; (*ITAG) Solyc04g071850.1.1 (e_value=8e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56450970-56451551 transcript_region:SL2.40ch04:56450970..56451551- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00017517g0004.1 protein AED:0.24 eAED:0.24 QI:354|0.91|0.84|1|0.91|0.92|13|0|676; (*GB) gi|225446195|ref|XP_002262878.1| (e_value=0.0) PREDICTED: S-acyltransferase TIP1 [Vitis vinifera];; (*SWP) sp|Q52T38|ZDH22_ARATH (e_value=0.0) S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1;; (*TAIR) AT5G20350.1 (e_value=0.0) | Symbols: TIP1 | Ankyrin repeat family protein with DHHC zinc finger domain | chr5:6876772-6881102 FORWARD LENGTH=620;; (*ITAG) Solyc07g007430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016417,GO:0000035 NbS00005023g0005.1 protein AED:0.11 eAED:0.11 QI:134|1|1|1|0.8|0.83|6|218|290; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=0.0) PHB2 [Nicotiana benthamiana];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=8e-110) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=6e-167) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00002693g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|108 NbS00002693g0003.1 protein AED:0.13 eAED:0.19 QI:0|0|0|1|1|1|2|0|137; (*ITAG) Solyc11g012520.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5340283-5340663 transcript_region:SL2.40ch11:5340283..5340663- functional_description:"Unknown Protein (AHRD V1)"; NbS00002693g0101.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|0|0|4|772|319 NbS00002693g0102.1 protein AED:0.60 eAED:0.60 QI:0|-1|0|1|-1|1|1|0|111 NbS00061214g0002.1 protein AED:0.26 eAED:0.37 QI:0|0|0|1|0.5|0.33|3|0|98; (*ITAG) Solyc10g049530.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00006544g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|138; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-44) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006544g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|0.33|0.75|4|0|251 NbS00006544g0004.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.4|0.25|0.4|5|0|187; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00012180g0011.1 protein AED:0.34 eAED:0.34 QI:480|1|1|1|0.83|0.85|7|436|229; (*GB) gi|302143626|emb|CBI22379.3| (e_value=2e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0P5L0|RBM42_BOVIN (e_value=2e-50) RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1;; (*TAIR) AT3G04500.1 (e_value=1e-81) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:1212065-1213795 REVERSE LENGTH=245;; (*ITAG) Solyc05g055010.2.1 (e_value=9e-94) genomic_reference:SL2.40ch05 gene_region:63932075-63935797 transcript_region:SL2.40ch05:63932075..63935797- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 **-- D3TPM8_GLOMM); contains Interpro domain(s) IPR015464 RNA recognition motif-related "; GO:0003676,GO:0000166 NbS00012180g0012.1 protein AED:0.35 eAED:0.36 QI:45|0.7|0.72|1|0.7|0.54|11|360|465; (*GB) gi|225435925|ref|XP_002267920.1| (e_value=0.0) PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93WX6|NFS2_ARATH (e_value=0.0) Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1;; (*TAIR) AT1G08490.1 (e_value=0.0) | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | chloroplastic NIFS-like cysteine desulfurase | chr1:2685980-2688547 REVERSE LENGTH=463;; (*ITAG) Solyc05g055000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63922322-63931643 transcript_region:SL2.40ch05:63922322..63931643+ go_terms:GO:0031071,GO:0009000 functional_description:"Cysteine desulfurase (AHRD V1 **** Q10WM4_TRIEI); contains Interpro domain(s) IPR010970 Cysteine desulfurase, SufS "; GO:0031071,GO:0009000 NbS00016827g0001.1 protein AED:0.30 eAED:0.30 QI:123|1|1|1|0.83|0.85|7|409|192; (*GB) gi|351724247|ref|NP_001237307.1| (e_value=1e-81) uncharacterized protein LOC100500390 [Glycine max];; (*SWP) sp|P25864|RK9_ARATH (e_value=8e-77) 50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=1 SV=1;; (*TAIR) AT3G44890.1 (e_value=6e-78) | Symbols: RPL9 | ribosomal protein L9 | chr3:16386505-16387963 FORWARD LENGTH=197;; (*ITAG) Solyc11g066410.1.1 (e_value=1e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49273765-49276760 transcript_region:SL2.40ch11:49273765..49276760- go_terms:GO:0005840 functional_description:"50S ribosomal protein L9 (AHRD V1 ***- B4FU53_MAIZE); contains Interpro domain(s) IPR000244 Ribosomal protein L9 "; GO:0005840 NbS00053227g0006.1 protein AED:0.11 eAED:0.13 QI:104|0.66|0.7|1|0.66|0.7|10|0|977; (*GB) gi|224144141|ref|XP_002325200.1| (e_value=3e-179) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g007920.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2576653-2584770 transcript_region:SL2.40ch07:2576653..2584770- go_terms:GO:0005488 functional_description:"Telomere-associated protein RIF1 (AHRD V1 *-*- RIF1_MOUSE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00005129g0021.1 protein AED:0.13 eAED:0.14 QI:16|0.62|0.66|1|0.75|0.66|9|0|823; (*GB) gi|359487636|ref|XP_002279490.2| (e_value=0.0) PREDICTED: translation initiation factor IF-2-like [Vitis vinifera];; (*SWP) sp|Q91YJ5|IF2M_MOUSE (e_value=2e-142) Translation initiation factor IF-2, mitochondrial OS=Mus musculus GN=Mtif2 PE=1 SV=2;; (*TAIR) AT4G11160.1 (e_value=0.0) | Symbols: | Translation initiation factor 2, small GTP-binding protein | chr4:6803846-6806726 FORWARD LENGTH=743;; (*ITAG) Solyc08g081900.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61981008-61987975 transcript_region:SL2.40ch08:61981008..61987975- go_terms:GO:0003743 functional_description:"Translation initiation factor IF-2 (AHRD V1 **** D7LZF5_ARALY); contains Interpro domain(s) IPR000178 Initiation factor 2 "; GO:0003743 NbS00005129g0002.1 protein AED:0.39 eAED:0.40 QI:0|0.8|0.66|1|0.8|0.66|6|275|220; (*GB) gi|225432416|ref|XP_002277762.1| (e_value=8e-112) PREDICTED: uncharacterized protein LOC100259554 [Vitis vinifera];; (*TAIR) AT3G06330.1 (e_value=6e-100) | Symbols: | RING/U-box superfamily protein | chr3:1917334-1919709 FORWARD LENGTH=426;; (*ITAG) Solyc01g067800.2.1 (e_value=1e-123) genomic_reference:SL2.40ch01 gene_region:69168624-69176357 transcript_region:SL2.40ch01:69168624..69176357- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH1 (AHRD V1 *--* MARH1_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0004842 NbS00005129g0022.1 protein AED:0.45 eAED:0.48 QI:165|0|0.66|1|0|0.66|3|0|75; (*ITAG) Solyc01g067800.2.1 (e_value=7e-22) genomic_reference:SL2.40ch01 gene_region:69168624-69176357 transcript_region:SL2.40ch01:69168624..69176357- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH1 (AHRD V1 *--* MARH1_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0004842 NbS00005129g0012.1 protein AED:0.33 eAED:0.52 QI:0|0|0|1|1|1|3|0|179 NbS00005129g0024.1 protein AED:0.36 eAED:0.69 QI:0|0|0|0.66|1|1|3|0|78 NbS00005129g0001.1 protein AED:0.06 eAED:0.06 QI:517|1|1|1|0.5|0.33|3|547|71; (*GB) gi|388504772|gb|AFK40452.1| (e_value=2e-37) unknown [Lotus japonicus];; (*TAIR) AT3G62450.1 (e_value=2e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 35 Blast hits to 35 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:23098144-23098630 FORWARD LENGTH=74;; (*ITAG) Solyc01g067820.2.1 (e_value=3e-48) genomic_reference:SL2.40ch01 gene_region:69190398-69192447 transcript_region:SL2.40ch01:69190398..69192447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005129g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.71|0.5|1|1|1|8|0|821; (*GB) gi|359473888|ref|XP_002276076.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein POB1-like [Vitis vinifera];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=0.0) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.1 (e_value=0.0) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22797953 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00005129g0019.1 protein AED:0.01 eAED:0.78 QI:0|1|0.5|1|1|1|2|11|397; (*GB) gi|359477306|ref|XP_002276974.2| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100266667 [Vitis vinifera];; (*TAIR) AT3G21480.1 (e_value=1e-27) | Symbols: | BRCT domain-containing DNA repair protein | chr3:7567730-7571990 FORWARD LENGTH=1041;; (*ITAG) Solyc01g067790.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:69160687-69166508 transcript_region:SL2.40ch01:69160687..69166508+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00022108g0005.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.33|1|1|1|3|0|343; (*GB) gi|224081447|ref|XP_002306414.1| (e_value=4e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43383|ACCH5_ARATH (e_value=6e-35) 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2;; (*TAIR) AT3G12900.1 (e_value=3e-148) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4104576-4106112 FORWARD LENGTH=357;; (*ITAG) Solyc11g045520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:38041656-38043766 transcript_region:SL2.40ch11:38041656..38043766- go_terms:GO:0016491 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00022108g0006.1 protein AED:0.00 eAED:0.00 QI:299|1|1|1|0.22|0.3|10|398|219; (*GB) gi|225435524|ref|XP_002283009.1| (e_value=3e-94) PREDICTED: uncharacterized protein LOC100243206 [Vitis vinifera];; (*TAIR) AT5G12920.3 (e_value=1e-75) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4077917-4082585 REVERSE LENGTH=554; NbS00024334g0006.1 protein AED:0.16 eAED:0.16 QI:48|0.71|0.5|0.87|0.85|0.75|8|0|343; (*GB) gi|224111744|ref|XP_002315962.1| (e_value=3e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5EA37|CC130_BOVIN (e_value=9e-67) Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1;; (*TAIR) AT1G25682.1 (e_value=8e-155) | Symbols: | Family of unknown function (DUF572) | chr1:9002532-9004550 REVERSE LENGTH=310;; (*ITAG) Solyc05g009910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4131350-4135256 transcript_region:SL2.40ch05:4131350..4135256- go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 94 (AHRD V1 ***- B6TAZ7_MAIZE); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; GO:0005515 NbS00024334g0004.1 protein AED:0.38 eAED:0.51 QI:0|0|0|1|1|1|3|0|105 NbS00009102g0004.1 protein AED:0.14 eAED:0.14 QI:201|0.8|0.83|1|0.8|0.83|6|0|295; (*GB) gi|359473854|ref|XP_002269010.2| (e_value=5e-107) PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera];; (*SWP) sp|A2R4I6|FES1_ASPNC (e_value=3e-14) Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1;; (*TAIR) AT3G51980.1 (e_value=1e-94) | Symbols: | ARM repeat superfamily protein | chr3:19285811-19287502 REVERSE LENGTH=382;; (*ITAG) Solyc04g009320.2.1 (e_value=9e-147) genomic_reference:SL2.40ch04 gene_region:2766840-2771952 transcript_region:SL2.40ch04:2766840..2771952+ go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- B2W0L6_PYRTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00009035g0012.1 protein AED:0.08 eAED:0.08 QI:337|1|0.87|1|1|1|16|738|1333; (*GB) gi|255556001|ref|XP_002519035.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G04920.2 (e_value=0.0) | Symbols: SFR6 | sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1267;; (*ITAG) Solyc02g078520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37750390-37767841 transcript_region:SL2.40ch02:37750390..37767841- functional_description:"Unknown Protein (AHRD V1)"; NbS00009035g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|169; (*GB) gi|147860851|emb|CAN83161.1| (e_value=6e-58) hypothetical protein VITISV_022556 [Vitis vinifera];; (*SWP) sp|A3LVD5|ESF2_PICST (e_value=4e-13) Pre-rRNA-processing protein ESF2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=ESF2 PE=3 SV=2;; (*TAIR) AT3G56510.2 (e_value=1e-39) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:20944348-20946235 REVERSE LENGTH=257;; (*ITAG) Solyc01g112010.2.1 (e_value=4e-75) genomic_reference:SL2.40ch01 gene_region:89898592-89901258 transcript_region:SL2.40ch01:89898592..89901258- functional_description:"Pre-rRNA-processing protein ESF2 (AHRD V1 ***- D0MVG4_PHYIN)"; NbS00009035g0013.1 protein AED:0.31 eAED:0.50 QI:292|0|0|0.6|1|1|5|483|273; (*GB) gi|190607697|gb|ACE79507.1| (e_value=1e-31) NBS-coding resistance gene analog [Nicotiana sylvestris];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=1e-21) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-22) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc11g006640.1.1 (e_value=5e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1242256-1245275 transcript_region:SL2.40ch11:1242256..1245275+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009035g0018.1 protein AED:0.30 eAED:0.30 QI:299|1|0.85|1|0.33|0.42|7|0|362; (*GB) gi|359496587|ref|XP_003635271.1| (e_value=7e-168) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=7e-96) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT3G09010.1 (e_value=6e-139) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc02g078530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37776215-37780077 transcript_region:SL2.40ch02:37776215..37780077+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00014913g0007.1 protein AED:0.14 eAED:0.25 QI:0|0.75|0.6|1|0.75|1|5|148|148; (*GB) gi|359494012|ref|XP_003634709.1| (e_value=2e-46) PREDICTED: uncharacterized protein LOC100854700 [Vitis vinifera];; (*TAIR) AT5G23240.1 (e_value=3e-14) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:7826857-7828534 REVERSE LENGTH=465; NbS00058916g0004.1 protein AED:0.25 eAED:0.29 QI:0|0.5|0.54|1|0.3|0.54|11|0|363; (*GB) gi|15227773|ref|NP_179884.1| (e_value=2e-84) serine carboxypeptidase-like 9 [Arabidopsis thaliana];; (*SWP) sp|O64811|SCP9_ARATH (e_value=7e-86) Serine carboxypeptidase-like 9 OS=Arabidopsis thaliana GN=SCPL9 PE=2 SV=1;; (*TAIR) AT2G23010.1 (e_value=5e-87) | Symbols: SCPL9 | serine carboxypeptidase-like 9 | chr2:9798843-9802485 FORWARD LENGTH=437;; (*ITAG) Solyc05g050770.2.1 (e_value=5e-113) genomic_reference:SL2.40ch05 gene_region:60069557-60079244 transcript_region:SL2.40ch05:60069557..60079244+ go_terms:GO:0016754 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0016754 NbS00017094g0001.1 protein AED:0.16 eAED:0.28 QI:0|0|0|1|1|1|2|0|100 NbS00058252g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0.66|0.71|7|0|509; (*GB) gi|225459832|ref|XP_002285920.1| (e_value=0.0) PREDICTED: 4-coumarate--CoA ligase-like 5 [Vitis vinifera];; (*SWP) sp|Q84P21|4CLL5_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2;; (*TAIR) AT1G20510.1 (e_value=0.0) | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:7103645-7105856 REVERSE LENGTH=546;; (*ITAG) Solyc12g094520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63076525-63080167 transcript_region:SL2.40ch12:63076525..63080167- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 ***- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00061319g0003.1 protein AED:0.04 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|154; (*GB) gi|350537355|ref|NP_001234034.1| (e_value=6e-62) IDS4-like protein [Solanum lycopersicum];; (*SWP) sp|Q8LBH4|SPX1_ARATH (e_value=2e-42) SPX domain-containing protein 1 OS=Arabidopsis thaliana GN=SPX1 PE=2 SV=2;; (*TAIR) AT5G20150.1 (e_value=2e-43) | Symbols: ATSPX1, SPX1 | SPX domain gene 1 | chr5:6802429-6803367 FORWARD LENGTH=256;; (*ITAG) Solyc08g060920.2.1 (e_value=1e-64) genomic_reference:SL2.40ch08 gene_region:42987091-42988595 transcript_region:SL2.40ch08:42987091..42988595+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00024644g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|356519136|ref|XP_003528230.1| (e_value=2e-20) PREDICTED: serpin-ZX-like [Glycine max];; (*SWP) sp|Q40066|SPZX_HORVU (e_value=2e-19) Serpin-ZX OS=Hordeum vulgare GN=PAZX PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=5e-17) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079480.2.1 (e_value=2e-27) genomic_reference:SL2.40ch04 gene_region:61543950-61545698 transcript_region:SL2.40ch04:61543950..61545698- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00053242g0001.1 protein AED:0.11 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|291; (*ITAG) Solyc09g072840.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61035463-61036288 transcript_region:SL2.40ch09:61035463..61036288- functional_description:"Unknown Protein (AHRD V1)"; NbC26049846g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|0.66|3|0|136; (*GB) gi|297742323|emb|CBI34472.3| (e_value=1e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MC7|PYL9_ARATH (e_value=6e-76) Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1;; (*TAIR) AT1G01360.1 (e_value=4e-77) | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187;; (*ITAG) Solyc12g055990.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47336796-47340728 transcript_region:SL2.40ch12:47336796..47340728+ functional_description:"Abscisic acid receptor PYL9 (AHRD V1 **-- PYL9_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00038062g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.33|1|1|0.66|3|0|169; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g041670.1.1 (e_value=7e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:26547867-26549349 transcript_region:SL2.40ch08:26547867..26549349+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00038062g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|294; (*GB) gi|224101041|ref|XP_002312117.1| (e_value=3e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28CY2|EIF3G_XENTR (e_value=1e-51) Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1;; (*TAIR) AT3G11400.1 (e_value=3e-133) | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation initiation factor 3G1 | chr3:3578536-3580366 FORWARD LENGTH=294;; (*ITAG) Solyc08g074790.2.1 (e_value=6e-170) genomic_reference:SL2.40ch08 gene_region:56103446-56105519 transcript_region:SL2.40ch08:56103446..56105519+ go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 4 (AHRD V1 ***- B4FBV8_MAIZE); contains Interpro domain(s) IPR017334 Translation initiation factor 3, RNA-binding subunit "; GO:0005515 NbS00059886g0006.1 protein AED:0.37 eAED:0.42 QI:0|0|0|1|0|0.25|4|0|167; (*GB) gi|224110762|ref|XP_002315627.1| (e_value=3e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WVW7|RQL5_ARATH (e_value=1e-51) ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2;; (*TAIR) AT1G27880.1 (e_value=8e-53) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:9708940-9713901 FORWARD LENGTH=911;; (*ITAG) Solyc05g014690.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8814439-8825664 transcript_region:SL2.40ch05:8814439..8825664+ go_terms:GO:0000739,GO:0005524,GO:0000405 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-** A0Y2E9_9GAMM); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0000739,GO:0005524,GO:0000405 NbS00059886g0005.1 protein AED:0.26 eAED:0.45 QI:0|0|0|1|0.5|0.44|9|0|345; (*GB) gi|225425865|ref|XP_002266225.1| (e_value=3e-100) PREDICTED: ATP-dependent DNA helicase Q-like 5-like [Vitis vinifera];; (*SWP) sp|Q0WVW7|RQL5_ARATH (e_value=6e-76) ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2;; (*TAIR) AT1G27880.1 (e_value=4e-77) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:9708940-9713901 FORWARD LENGTH=911;; (*ITAG) Solyc05g014690.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8814439-8825664 transcript_region:SL2.40ch05:8814439..8825664+ go_terms:GO:0000739,GO:0005524,GO:0000405 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-** A0Y2E9_9GAMM); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0000739,GO:0005524,GO:0000405 NbS00038960g0005.1 protein AED:0.16 eAED:0.16 QI:355|0.75|0.6|1|0.5|0.4|5|0|174; (*GB) gi|224069122|ref|XP_002326280.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28230.1 (e_value=4e-88) | Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219;; (*ITAG) Solyc12g009090.1.1 (e_value=6e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2414294-2418251 transcript_region:SL2.40ch12:2414294..2418251+ go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013921 Mediator complex, subunit Med20 "; GO:0016592 NbS00038960g0006.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.33|1|0.5|0.66|3|0|148; (*GB) gi|225444738|ref|XP_002278940.1| (e_value=4e-81) PREDICTED: uncharacterized protein LOC100261240 [Vitis vinifera];; (*TAIR) AT2G06010.1 (e_value=9e-76) | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336841-2338391 FORWARD LENGTH=188;; (*ITAG) Solyc12g009080.1.1 (e_value=1e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2409947-2411521 transcript_region:SL2.40ch12:2409947..2411521+ functional_description:"OBP3-responsive gene 4 (AHRD V1 **-- D7L9C5_ARALY)"; NbS00046695g0007.1 protein AED:0.03 eAED:0.03 QI:160|0.5|0.33|1|0.5|0.33|3|0|318; (*GB) gi|255574129|ref|XP_002527980.1| (e_value=1e-127) transcription factor, putative [Ricinus communis];; (*SWP) sp|O04017|NAC98_ARATH (e_value=2e-75) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT2G24430.2 (e_value=3e-102) | Symbols: ANAC039 | NAC domain containing protein 38 | chr2:10383517-10386386 REVERSE LENGTH=316;; (*ITAG) Solyc08g006020.2.1 (e_value=5e-117) genomic_reference:SL2.40ch08 gene_region:784730-788036 transcript_region:SL2.40ch08:784730..788036+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00031825g0002.1 protein AED:0.27 eAED:0.45 QI:233|0.33|0.75|1|0|0.25|4|580|89 NbS00026262g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0.5|0.8|5|0|489; (*GB) gi|224121814|ref|XP_002318679.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPL2|PTR32_ARATH (e_value=3e-149) Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2;; (*TAIR) AT3G16180.1 (e_value=2e-150) | Symbols: | Major facilitator superfamily protein | chr3:5481477-5484943 REVERSE LENGTH=591;; (*ITAG) Solyc12g007220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1636828-1640811 transcript_region:SL2.40ch12:1636828..1640811- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00016589g0109.1 protein AED:0.10 eAED:0.10 QI:160|1|1|1|1|1|3|248|130 NbS00016589g0110.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0.5|0.66|3|0|126 NbS00016589g0112.1 protein AED:0.59 eAED:0.66 QI:0|0|0|0.33|0|0.33|3|0|159 NbS00043069g0004.1 protein AED:0.26 eAED:0.26 QI:304|0.8|0.66|0.83|0.8|0.66|6|0|171; (*GB) gi|7801129|emb|CAB91552.1| (e_value=5e-78) DREPP2 protein [Nicotiana tabacum];; (*SWP) sp|Q0JPA6|SRS1_ORYSJ (e_value=2e-28) Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1;; (*TAIR) AT4G20260.5 (e_value=4e-53) | Symbols: PCAP1 | plasma-membrane associated cation-binding protein 1 | chr4:10941593-10943120 FORWARD LENGTH=167;; (*ITAG) Solyc10g005100.2.1 (e_value=1e-78) genomic_reference:SL2.40ch10 gene_region:92148-94188 transcript_region:SL2.40ch10:92148..94188+ functional_description:"Salt stress root protein RS1 (AHRD V1 **-- SRS1_ORYSJ); contains Interpro domain(s) IPR008469 DREPP plasma membrane polypeptide "; NbS00042246g0005.1 protein AED:0.21 eAED:0.21 QI:230|1|1|1|1|1|7|537|312; (*GB) gi|225438936|ref|XP_002284127.1| (e_value=3e-155) PREDICTED: uncharacterized protein ycf36 [Vitis vinifera];; (*SWP) sp|P51273|YCF36_PORPU (e_value=2e-36) Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1;; (*TAIR) AT5G67370.1 (e_value=2e-140) | Symbols: | Protein of unknown function (DUF1230) | chr5:26877667-26879465 REVERSE LENGTH=327;; (*ITAG) Solyc02g092700.2.1 (e_value=4e-169) genomic_reference:SL2.40ch02 gene_region:48271107-48274657 transcript_region:SL2.40ch02:48271107..48274657- functional_description:"Ycf36 protein (AHRD V1 *-*- D4ZSA0_SPIPL); contains Interpro domain(s) IPR009631 Protein of unknown function DUF1230 "; NbS00011717g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.76|0.57|1|0.76|0.85|14|149|1576; (*ITAG) Solyc04g071660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56237064-56246779 transcript_region:SL2.40ch04:56237064..56246779- functional_description:"Unknown Protein (AHRD V1)"; NbS00011717g0001.1 protein AED:0.42 eAED:0.72 QI:0|0.5|0|0.66|1|1|3|0|1059; (*GB) gi|297839545|ref|XP_002887654.1| (e_value=6e-16) hypothetical protein ARALYDRAFT_895556 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G76740.1 (e_value=7e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76840.1); Has 3683 Blast hits to 2942 proteins in 407 species: Archae - 9; Bacteria - 440; Metazoa - 1472; Fungi - 269; Plants - 192; Viruses - 8; Other Eukaryotes - 1293 (source: NCBI BLink). | chr1:28805235-28810477 FORWARD LENGTH=1532;; (*ITAG) Solyc04g071660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56237064-56246779 transcript_region:SL2.40ch04:56237064..56246779- functional_description:"Unknown Protein (AHRD V1)"; NbS00011717g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.33|0.30|0.92|0.66|0.69|13|0|1094; (*GB) gi|338222858|gb|AEI87569.1| (e_value=0.0) cellulose synthase catalytic subunit protein [Nicotiana tabacum];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc04g071650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00005861g0001.1 protein AED:0.00 eAED:0.00 QI:68|1|1|1|0.5|0.33|3|202|123; (*GB) gi|224086906|ref|XP_002308001.1| (e_value=3e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41450.2 (e_value=6e-51) | Symbols: | N-acetyltransferases;N-acetyltransferases | chr2:17278670-17281637 FORWARD LENGTH=549;; (*ITAG) Solyc04g017650.2.1 (e_value=2e-76) genomic_reference:SL2.40ch04 gene_region:7719041-7726013 transcript_region:SL2.40ch04:7719041..7726013- go_terms:GO:0008152,GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_RAT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008152,GO:0005622 NbS00005861g0011.1 protein AED:0.24 eAED:0.25 QI:15|0.5|0.4|1|1|1|5|147|450; (*GB) gi|255585387|ref|XP_002533389.1| (e_value=3e-176) pheophorbide A oxygenase, putative [Ricinus communis];; (*SWP) sp|Q8W496|PTC52_ARATH (e_value=3e-89) Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1;; (*TAIR) AT4G25650.1 (e_value=1e-90) | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | chr4:13081021-13083153 REVERSE LENGTH=536;; (*ITAG) Solyc04g040160.2.1 (e_value=1e-143) genomic_reference:SL2.40ch04 gene_region:31076099-31081223 transcript_region:SL2.40ch04:31076099..31081223- go_terms:GO:0051536,GO:0032441 functional_description:"Pheophorbide a oxygenase (AHRD V1 **-* B6ST74_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0051536,GO:0032441 NbS00005861g0010.1 protein AED:0.07 eAED:0.16 QI:0|0|0|1|0|0|5|0|408; (*GB) gi|224086880|ref|XP_002307992.1| (e_value=8e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50160.1 (e_value=2e-18) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18598826-18600903 REVERSE LENGTH=503;; (*ITAG) Solyc04g017640.1.1 (e_value=9e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:7683829-7685148 transcript_region:SL2.40ch04:7683829..7685148+ functional_description:"At1g67150 (Fragment) (AHRD V1 *-*- B0FUD6_ARATH); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00035453g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|0.5|1|1|2|761|106 NbS00035453g0008.1 protein AED:0.19 eAED:0.31 QI:64|0.5|0.4|1|0.75|0.6|5|0|190; (*GB) gi|255588641|ref|XP_002534670.1| (e_value=6e-69) Derlin-2, putative [Ricinus communis];; (*SWP) sp|Q8VZU9|DERL1_ARATH (e_value=6e-70) Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1;; (*TAIR) AT4G29330.1 (e_value=5e-71) | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952 FORWARD LENGTH=266;; (*ITAG) Solyc05g026310.2.1 (e_value=2e-111) genomic_reference:SL2.40ch05 gene_region:40385875-40400417 transcript_region:SL2.40ch05:40385875..40400417- go_terms:GO:0005515 functional_description:"Derlin-3 (AHRD V1 ***- B6U3C7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0005515 NbC26144735g0003.1 protein AED:0.31 eAED:0.31 QI:0|1|0.9|1|0.88|0.9|10|0|560; (*GB) gi|225444051|ref|XP_002263998.1| (e_value=0.0) PREDICTED: 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VYJ1|MENE_ARATH (e_value=0.0) 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal OS=Arabidopsis thaliana GN=AAE14 PE=1 SV=1;; (*TAIR) AT1G30520.1 (e_value=0.0) | Symbols: AAE14 | acyl-activating enzyme 14 | chr1:10811039-10813546 FORWARD LENGTH=560;; (*ITAG) Solyc02g069920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34281465-34286083 transcript_region:SL2.40ch02:34281465..34286083+ go_terms:GO:0008756,GO:0004467 functional_description:"Long-chain-fatty-acid CoA ligase (AHRD V1 **** A4A722_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008756,GO:0004467 NbS00005597g0004.1 protein AED:0.01 eAED:0.02 QI:0|0.5|0.33|1|0.5|0.33|3|230|968; (*GB) gi|359484751|ref|XP_002264530.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G51350.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:20867860-20870621 REVERSE LENGTH=895;; (*ITAG) Solyc07g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:41653-45693 transcript_region:SL2.40ch07:41653..45693+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018107g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.16|0.5|0.8|0.5|6|0|249; (*GB) gi|147768335|emb|CAN66971.1| (e_value=3e-115) hypothetical protein VITISV_013670 [Vitis vinifera];; (*SWP) sp|Q9U5L1|SRPR_DROME (e_value=1e-64) Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2;; (*TAIR) AT4G30600.1 (e_value=4e-110) | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634;; (*ITAG) Solyc12g009990.1.1 (e_value=8e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3132677-3136254 transcript_region:SL2.40ch12:3132677..3136254+ go_terms:GO:0017111,GO:0006614,GO:0005785 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1GCL3_PARBD); contains Interpro domain(s) IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal "; GO:0017111,GO:0006614,GO:0005785 NbS00018107g0004.1 protein AED:0.35 eAED:0.35 QI:32|0|0.33|1|1|1|3|0|318; (*GB) gi|356545419|ref|XP_003541140.1| (e_value=5e-118) PREDICTED: probable purine permease 5-like [Glycine max];; (*SWP) sp|Q9ZUH3|PUP5_ARATH (e_value=3e-107) Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2;; (*TAIR) AT2G24220.2 (e_value=3e-108) | Symbols: PUP5 | purine permease 5 | chr2:10300603-10301688 FORWARD LENGTH=361;; (*ITAG) Solyc07g005660.2.1 (e_value=1e-112) genomic_reference:SL2.40ch07 gene_region:536448-539294 transcript_region:SL2.40ch07:536448..539294+ go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00010770g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|313586483|gb|ADR71252.1| (e_value=3e-55) 40S ribosomal protein S15E [Hevea brasiliensis];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=9e-55) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09500.1 (e_value=1e-52) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc06g053820.2.1 (e_value=4e-59) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00047453g0003.1 protein AED:0.23 eAED:0.28 QI:0|0|0|0.75|1|1|4|0|214; (*GB) gi|297745451|emb|CBI40531.3| (e_value=2e-57) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G45360.1 (e_value=7e-11) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc01g095920.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:78825307-78827149 transcript_region:SL2.40ch01:78825307..78827149- go_terms:GO:0008171 functional_description:"O-methyltransferase family 3 (AHRD V1 ***- B5ZT51_RHILW); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; GO:0008171 NbS00034275g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.55|0.5|0.9|0.66|0.6|10|271|905; (*GB) gi|225448888|ref|XP_002263930.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241098 [Vitis vinifera];; (*SWP) sp|P29503|NEUR_DROME (e_value=7e-12) Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2;; (*TAIR) AT5G04460.2 (e_value=2e-117) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263502 FORWARD LENGTH=825;; (*ITAG) Solyc11g007910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008658g0002.1 protein AED:0.99 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|127 NbS00018993g0001.1 protein AED:0.19 eAED:0.19 QI:141|0.75|0.84|1|1|1|25|391|813; (*GB) gi|225429690|ref|XP_002280069.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA [Vitis vinifera];; (*SWP) sp|Q42371|ERECT_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1;; (*TAIR) AT2G26330.1 (e_value=0.0) | Symbols: ER, QRP1 | Leucine-rich receptor-like protein kinase family protein | chr2:11208367-11213895 REVERSE LENGTH=976;; (*ITAG) Solyc08g061560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46197158-46204157 transcript_region:SL2.40ch08:46197158..46204157- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018993g0015.1 protein AED:0.18 eAED:0.21 QI:287|0.82|0.8|1|0.67|0.77|35|0|1458; (*GB) gi|296081724|emb|CBI20729.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y4I1|MYO5A_HUMAN (e_value=5e-138) Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2;; (*TAIR) AT4G33200.1 (e_value=0.0) | Symbols: XI-I, ATXI-I, XI-15 | myosin, putative | chr4:16002768-16014792 REVERSE LENGTH=1522;; (*ITAG) Solyc08g061500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:46027806-46053197 transcript_region:SL2.40ch08:46027806..46053197- go_terms:GO:0042802 functional_description:"Myosin-like protein (AHRD V1 ***- Q0WPU1_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042802 NbS00018993g0004.1 protein AED:0.34 eAED:0.41 QI:0|0|0|1|1|1|2|0|284; (*GB) gi|225429696|ref|XP_002281841.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100260963 [Vitis vinifera];; (*TAIR) AT5G21940.1 (e_value=4e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7249446-7250353 REVERSE LENGTH=264;; (*ITAG) Solyc08g061490.2.1 (e_value=2e-34) genomic_reference:SL2.40ch08 gene_region:46025993-46027176 transcript_region:SL2.40ch08:46025993..46027176+ functional_description:"MTD1 (AHRD V1 ***- Q9LLM3_MEDTR)"; NbS00023078g0003.1 protein AED:0.31 eAED:0.32 QI:0|0.66|0.5|1|0.66|0.5|4|0|262; (*GB) gi|255584446|ref|XP_002532954.1| (e_value=5e-119) translation initiation factor eif-2b alpha subunit, putative [Ricinus communis];; (*SWP) sp|Q54I81|EI2BA_DICDI (e_value=2e-22) Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1;; (*TAIR) AT1G72340.1 (e_value=2e-108) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr1:27236898-27238482 FORWARD LENGTH=382;; (*ITAG) Solyc12g049580.1.1 (e_value=1e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46664001-46668223 transcript_region:SL2.40ch12:46664001..46668223- go_terms:GO:0044237 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- MTNA_CLOTH); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0044237 NbS00034948g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|646; (*GB) gi|224115248|ref|XP_002316982.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0.0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1;; (*TAIR) AT3G20580.1 (e_value=0.0) | Symbols: COBL10 | COBRA-like protein 10 precursor | chr3:7188063-7190416 REVERSE LENGTH=672;; (*ITAG) Solyc10g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1056386-1059210 transcript_region:SL2.40ch10:1056386..1059210- functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00058398g0003.1 protein AED:0.34 eAED:0.44 QI:66|0|0.5|1|1|1|2|201|52 NbS00001261g0002.1 protein AED:0.17 eAED:0.18 QI:471|0|0.5|1|0|0.5|2|0|304; (*GB) gi|147820325|emb|CAN73573.1| (e_value=1e-98) hypothetical protein VITISV_007446 [Vitis vinifera];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=7e-22) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G10760.1 (e_value=1e-82) | Symbols: | Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335;; (*ITAG) Solyc10g080960.1.1 (e_value=1e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61464101-61464901 transcript_region:SL2.40ch10:61464101..61464901+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00001261g0005.1 protein AED:0.22 eAED:0.22 QI:44|1|1|1|1|1|5|284|299; (*GB) gi|359479954|ref|XP_002263128.2| (e_value=5e-178) PREDICTED: c-1-tetrahydrofolate synthase, cytoplasmic [Vitis vinifera];; (*SWP) sp|Q8Y7C5|FOLD_LISMO (e_value=4e-92) Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1;; (*TAIR) AT3G12290.1 (e_value=3e-169) | Symbols: | Amino acid dehydrogenase family protein | chr3:3919591-3921326 FORWARD LENGTH=299;; (*ITAG) Solyc10g080970.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61467340-61472069 transcript_region:SL2.40ch10:61467340..61472069+ go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00003776g0001.1 protein AED:0.54 eAED:0.61 QI:0|0|0|0.4|1|1|5|0|212; (*ITAG) Solyc11g039970.1.1 (e_value=3e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003776g0006.1 protein AED:0.52 eAED:0.85 QI:0|0|0|0.75|1|1|4|0|155; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=6e-24) Maturase [Medicago truncatula];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=1e-14) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1; NbS00003776g0017.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.66|0|0.33|3|0|135; (*GB) gi|357470609|ref|XP_003605589.1| (e_value=2e-20) Cytochrome b559 subunit alpha [Medicago truncatula];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=9e-15) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=7e-16) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83; NbS00003776g0011.1 protein AED:0.22 eAED:0.28 QI:0|0|0|1|0|0|3|0|281; (*GB) gi|11465999|ref|NP_054541.1| (e_value=4e-44) ribosomal protein L23 [Nicotiana tabacum];; (*SWP) sp|P06391|RK23_TOBAC (e_value=1e-45) 50S ribosomal protein L23, chloroplastic OS=Nicotiana tabacum GN=rpl23-A PE=1 SV=1;; (*ITAG) ATCG01300.1 (e_value=9e-44) | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=93;; (*ITAG) Solyc12g033090.1.1 (e_value=6e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22380426-22380925 transcript_region:SL2.40ch12:22380426..22380925+ go_terms:GO:0005840,GO:0000166 functional_description:"50S ribosomal protein L23 (AHRD V1 ***- D1M7Q7_PARAR); contains Interpro domain(s) IPR013025 Ribosomal protein L25/L23 "; GO:0005840,GO:0000166 NbS00003776g0009.1 protein AED:0.13 eAED:0.34 QI:0|0|0|1|0|0|3|0|202; (*GB) gi|913147|gb|AAB33492.1| (e_value=6e-60) ATP synthase subunit 6 [Petunia axillaris subsp. parodii];; (*SWP) sp|P05499|ATP6_TOBAC (e_value=1e-60) ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1;; (*ITAG) ATMG01170.1 (e_value=2e-49) | Symbols: ATP6-2 | ATPase, F0 complex, subunit A protein | chrM:296820-297869 REVERSE LENGTH=349;; (*ITAG) Solyc00g171810.2.1 (e_value=2e-42) genomic_reference:SL2.40ch00 gene_region:18050017-18051583 transcript_region:SL2.40ch00:18050017..18051583- go_terms:GO:0045263 functional_description:"ATP synthase subunit a (AHRD V1 ***- Q45KQ5_CAPAN); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0045263 NbS00003776g0012.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|3|0|184; (*GB) gi|4106831|gb|AAD03035.1| (e_value=4e-89) apocytochrome b [Solanum tuberosum];; (*SWP) sp|Q9ZZT8|CYB_PEA (e_value=2e-87) Cytochrome b OS=Pisum sativum GN=MT-CYB PE=3 SV=1;; (*ITAG) ATMG00220.1 (e_value=4e-88) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=4e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00003776g0015.1 protein AED:0.41 eAED:0.59 QI:0|0|0|1|0|0|2|0|135; (*GB) gi|4106845|gb|AAD03041.1| (e_value=1e-18) apocytochrome b [Solanum tuberosum];; (*SWP) sp|P42792|CYB_ARATH (e_value=3e-19) Cytochrome b OS=Arabidopsis thaliana GN=MT-CYB PE=2 SV=2;; (*ITAG) ATMG00220.1 (e_value=3e-20) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=3e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00003776g0014.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0|2|0|109; (*GB) gi|57013893|ref|YP_173367.1| (e_value=2e-51) ribosomal protein S14 [Nicotiana tabacum];; (*SWP) sp|P14875|RT14_OENBE (e_value=9e-16) Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=1e-13) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc09g050030.1.1 (e_value=9e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152232-32152420 transcript_region:SL2.40ch09:32152232..32152420- go_terms:GO:0005840 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A8TZK0_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0005840 NbS00003776g0013.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|94; (*GB) gi|357436137|ref|XP_003588344.1| (e_value=2e-43) Ribosomal protein L5 [Medicago truncatula];; (*SWP) sp|P51409|RM05_SOLTU (e_value=8e-41) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=2e-40) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc07g040970.1.1 (e_value=3e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00003776g0016.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|92; (*GB) gi|791143|emb|CAA60171.1| (e_value=4e-33) ribosomal protein L5 [Solanum tuberosum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-30) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=2e-27) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00003776g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|132861|sp|P21434.1|RK2_NICDE (e_value=2e-27) RecName: Full=50S ribosomal protein L2, chloroplastic;; (*SWP) sp|P21434|RK2_NICDE (e_value=6e-29) 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=6e-28) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=6e-27) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00020364g0003.1 protein AED:0.36 eAED:0.36 QI:0|0.33|0.5|1|1|1|4|0|209; (*GB) gi|7228160|emb|CAB77025.1| (e_value=6e-125) putative Rho GDP dissociation inhibitor [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=4e-51) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=3e-52) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc09g072670.2.1 (e_value=9e-103) genomic_reference:SL2.40ch09 gene_region:60777904-60789755 transcript_region:SL2.40ch09:60777904..60789755+ go_terms:GO:0017048,GO:0005094 functional_description:"Rho GDP dissociation inhibitor 1 (AHRD V1 **** Q705X4_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0017048,GO:0005094 NbS00020364g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|255561524|ref|XP_002521772.1| (e_value=1e-37) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc09g072680.1.1 (e_value=3e-104) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60789850-60791031 transcript_region:SL2.40ch09:60789850..60791031- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00020364g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|1|2|435|130; (*GB) gi|225438033|ref|XP_002271509.1| (e_value=1e-22) PREDICTED: phospholipid--sterol O-acyltransferase [Vitis vinifera];; (*SWP) sp|Q4VCM1|LCAT2_ARATH (e_value=2e-23) Phospholipid--sterol O-acyltransferase OS=Arabidopsis thaliana GN=PSAT PE=2 SV=2;; (*TAIR) AT1G04010.1 (e_value=2e-24) | Symbols: PSAT1, ATPSAT1 | phospholipid sterol acyl transferase 1 | chr1:1031703-1036128 REVERSE LENGTH=633;; (*ITAG) Solyc09g072710.2.1 (e_value=9e-31) genomic_reference:SL2.40ch09 gene_region:60818267-60830346 transcript_region:SL2.40ch09:60818267..60830346- go_terms:GO:0080095,GO:0004607,GO:0080096 functional_description:"Phosphatidylcholine-sterol O-acyltransferase (AHRD V1 **** D7KDA5_ARALY); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0080095,GO:0004607,GO:0080096 NbS00043107g0004.1 protein AED:0.18 eAED:0.18 QI:254|0.75|0.8|1|0.75|1|5|0|244; (*GB) gi|356517060|ref|XP_003527208.1| (e_value=5e-97) PREDICTED: probable beta-1,3-galactosyltransferase 14-like [Glycine max];; (*SWP) sp|Q8L7M1|B3GTE_ARATH (e_value=2e-97) Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1;; (*TAIR) AT1G53290.1 (e_value=1e-98) | Symbols: | Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345;; (*ITAG) Solyc10g007200.2.1 (e_value=9e-121) genomic_reference:SL2.40ch10 gene_region:1630883-1636235 transcript_region:SL2.40ch10:1630883..1636235+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00050999g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.25|0.2|0.8|1|1|5|0|405; (*GB) gi|255586487|ref|XP_002533885.1| (e_value=0.0) Cell division protein kinase 7, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=1e-127) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.2 (e_value=8e-129) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=573;; (*ITAG) Solyc04g051460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49720274-49725672 transcript_region:SL2.40ch04:49720274..49725672+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** D3PJA7_9MAXI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00050999g0005.1 protein AED:0.20 eAED:0.20 QI:77|1|1|1|0.85|0.87|8|320|596; (*GB) gi|359480869|ref|XP_002275388.2| (e_value=2e-51) PREDICTED: TSL-kinase interacting protein 1-like [Vitis vinifera];; (*SWP) sp|Q8LJT8|TKI1_ARATH (e_value=8e-30) TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2;; (*TAIR) AT4G39380.1 (e_value=2e-38) | Symbols: | BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:18309628-18311874 REVERSE LENGTH=518;; (*ITAG) Solyc04g051450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49711894-49716979 transcript_region:SL2.40ch04:49711894..49716979+ go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 *-*- D7LJ99_ARALY)"; GO:0005515,GO:0003700 NbS00005012g0002.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|232; (*GB) gi|306035016|gb|ADM83596.1| (e_value=4e-96) adenylate cyclase [Ipomoea nil];; (*TAIR) AT2G11890.1 (e_value=3e-57) | Symbols: | adenylate cyclases | chr2:4802999-4803631 FORWARD LENGTH=210;; (*ITAG) Solyc06g068290.1.1 (e_value=2e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38702858-38703466 transcript_region:SL2.40ch06:38702858..38703466+ go_terms:GO:0006171 functional_description:"Adenylate cyclase (AHRD V1 ***- D7LB43_ARALY); contains Interpro domain(s) IPR008172 Adenylate cyclase "; GO:0006171 NbS00005012g0019.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|0.66|1|1|3|0|595; (*GB) gi|224129414|ref|XP_002328711.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LU46|RH35_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1;; (*TAIR) AT5G51280.1 (e_value=0.0) | Symbols: | DEAD-box protein abstrakt, putative | chr5:20841456-20843645 FORWARD LENGTH=591;; (*ITAG) Solyc06g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38698621-38702294 transcript_region:SL2.40ch06:38698621..38702294- go_terms:GO:0008026,GO:0005524,GO:0008270 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524,GO:0008270 NbS00005012g0016.1 protein AED:0.25 eAED:0.27 QI:311|0.65|0.71|1|0.7|0.76|21|0|1286; (*GB) gi|297743499|emb|CBI36366.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B4JW99|K0664_DROGR (e_value=5e-17) Protein KIAA0664 homolog OS=Drosophila grimshawi GN=GH22778 PE=3 SV=1;; (*TAIR) AT1G15290.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5257327-5264814 REVERSE LENGTH=1608;; (*ITAG) Solyc06g068230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38675059-38684575 transcript_region:SL2.40ch06:38675059..38684575+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_NEUCR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00005012g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|359; (*GB) gi|359482723|ref|XP_003632816.1| (e_value=1e-85) PREDICTED: protein KIAA0664 homolog [Vitis vinifera];; (*TAIR) AT1G15290.1 (e_value=7e-13) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5257327-5264814 REVERSE LENGTH=1608;; (*ITAG) Solyc06g068230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38675059-38684575 transcript_region:SL2.40ch06:38675059..38684575+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_NEUCR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00019777g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.46|0.93|0.64|0.66|15|228|1142; (*GB) gi|225437787|ref|XP_002273987.1| (e_value=0.0) PREDICTED: ABC transporter B family member 11 [Vitis vinifera];; (*SWP) sp|Q9M1Q9|AB21B_ARATH (e_value=0.0) ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2;; (*TAIR) AT3G62150.1 (e_value=0.0) | Symbols: PGP21 | P-glycoprotein 21 | chr3:23008755-23013579 REVERSE LENGTH=1296;; (*ITAG) Solyc06g009290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3249411-3257702 transcript_region:SL2.40ch06:3249411..3257702- go_terms:GO:0010329,GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329,GO:0008559 NbS00037519g0015.1 protein AED:0.08 eAED:0.08 QI:408|1|1|1|1|1|7|672|429; (*GB) gi|225435772|ref|XP_002285729.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267227 isoform 1 [Vitis vinifera];; (*TAIR) AT1G55360.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr1:20666526-20668502 REVERSE LENGTH=422;; (*ITAG) Solyc01g081570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73275835-73278744 transcript_region:SL2.40ch01:73275835..73278744+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6TV70_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00037519g0018.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0.5|2|0|141; (*GB) gi|2583130|gb|AAB82639.1| (e_value=8e-13) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana];; (*ITAG) Solyc09g055600.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:37942548-37942919 transcript_region:SL2.40ch09:37942548..37942919- functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 ***- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00037519g0012.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|165 NbS00037519g0004.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|224120950|ref|XP_002330866.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDB4|NLTP6_ARATH (e_value=9e-16) Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1;; (*TAIR) AT3G08770.1 (e_value=7e-17) | Symbols: LTP6 | lipid transfer protein 6 | chr3:2664349-2664784 REVERSE LENGTH=113;; (*ITAG) Solyc01g081590.2.1 (e_value=3e-42) genomic_reference:SL2.40ch01 gene_region:73300808-73302079 transcript_region:SL2.40ch01:73300808..73302079- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** B9N6K5_POPTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00037519g0019.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|66; (*ITAG) Solyc06g035800.1.1 (e_value=8e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00038051g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|147778590|emb|CAN73469.1| (e_value=5e-43) hypothetical protein VITISV_000273 [Vitis vinifera];; (*TAIR) AT1G68450.1 (e_value=9e-21) | Symbols: | VQ motif-containing protein | chr1:25661721-25662179 REVERSE LENGTH=152; NbS00038051g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|3|0|493; (*GB) gi|17402469|emb|CAD13177.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00010209g0001.1 protein AED:0.03 eAED:0.23 QI:72|-1|0|1|-1|1|1|0|97; (*GB) gi|255568762|ref|XP_002525352.1| (e_value=3e-36) glutathione s-transferase, putative [Ricinus communis];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=1e-16) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-14) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g063150.2.1 (e_value=2e-42) genomic_reference:SL2.40ch09 gene_region:56794180-56795954 transcript_region:SL2.40ch09:56794180..56795954+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** Q8H9E5_CUCMA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364 NbS00034041g0001.1 protein AED:0.49 eAED:0.74 QI:0|0.14|0.12|0.62|1|1|8|6|310; (*GB) gi|255564114|ref|XP_002523054.1| (e_value=1e-122) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9P7J5|YJNA_SCHPO (e_value=4e-40) Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B10.10c PE=2 SV=1;; (*TAIR) AT4G02480.1 (e_value=4e-118) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc09g074950.2.1 (e_value=7e-130) genomic_reference:SL2.40ch09 gene_region:62243552-62258359 transcript_region:SL2.40ch09:62243552..62258359+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00034041g0014.1 protein AED:0.02 eAED:0.05 QI:65|0.75|0.6|1|0.75|0.6|5|259|715; (*GB) gi|255539302|ref|XP_002510716.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc04g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63881553-63887198 transcript_region:SL2.40ch04:63881553..63887198- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 *-*- GTR12_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00034041g0012.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|0.5|2|0|42 NbS00034041g0013.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0|0|3|0|154; (*GB) gi|351653948|ref|YP_004891674.1| (e_value=2e-38) ycf1 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=4e-39) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=1e-16) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021270.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13396524-13396679 transcript_region:SL2.40ch11:13396524..13396679- functional_description:"Ycf1 (AHRD V1 ***- D2KLR1_OLEEU)"; NbS00037482g0007.1 protein AED:0.37 eAED:0.37 QI:176|0.8|0.83|1|0.6|0.83|6|353|104; (*GB) gi|357467451|ref|XP_003604010.1| (e_value=5e-48) NADH dehydrogenase [Medicago truncatula];; (*SWP) sp|Q945M1|NDUB9_ARATH (e_value=7e-46) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1;; (*TAIR) AT4G34700.1 (e_value=5e-47) | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster biogenesis protein | chr4:16556874-16558362 FORWARD LENGTH=117;; (*ITAG) Solyc01g110390.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:88860841-88872420 transcript_region:SL2.40ch01:88860841..88872420+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB9_MOUSE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0005515,GO:0008137 NbS00037482g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc01g110400.2.1 (e_value=2e-13) genomic_reference:SL2.40ch01 gene_region:88874326-88874959 transcript_region:SL2.40ch01:88874326..88874959- functional_description:"Unknown Protein (AHRD V1)"; NbS00037482g0008.1 protein AED:0.07 eAED:0.07 QI:260|0.6|0.5|1|0.4|0.66|6|184|227; (*GB) gi|76160972|gb|ABA40449.1| (e_value=3e-95) unknown [Solanum tuberosum];; (*SWP) sp|Q55BK0|UFD1_DICDI (e_value=5e-56) Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1;; (*TAIR) AT2G21270.2 (e_value=2e-89) | Symbols: UFD1 | ubiquitin fusion degradation 1 | chr2:9108126-9110012 FORWARD LENGTH=319;; (*ITAG) Solyc01g110410.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:88875329-88881371 transcript_region:SL2.40ch01:88875329..88881371- go_terms:GO:0005515 functional_description:"Ubiquitin fusion-degradation protein-like (AHRD V1 ***- Q307X2_SOLTU); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 "; GO:0005515 NbS00048756g0010.1 protein AED:0.00 eAED:0.00 QI:302|1|1|1|0.5|0.33|3|262|424; (*GB) gi|356555783|ref|XP_003546209.1| (e_value=4e-174) PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Glycine max];; (*SWP) sp|Q12972|PP1R8_HUMAN (e_value=8e-22) Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2;; (*TAIR) AT5G47790.1 (e_value=2e-141) | Symbols: | SMAD/FHA domain-containing protein | chr5:19351396-19352579 FORWARD LENGTH=369;; (*ITAG) Solyc04g015170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5350550-5353424 transcript_region:SL2.40ch04:5350550..5353424+ functional_description:"Nuclear inhibitor of protein phosphatase 1 (AHRD V1 *--- Q9V7W9_DROME); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00048756g0011.1 protein AED:0.09 eAED:0.09 QI:624|1|1|1|0.88|0.8|10|406|1051; (*GB) gi|359495634|ref|XP_002264782.2| (e_value=0.0) PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera];; (*SWP) sp|Q9ZVT9|C2GR1_ARATH (e_value=0.0) C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4;; (*TAIR) AT1G03370.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding and GRAM domain containing protein | chr1:830968-834996 FORWARD LENGTH=1020;; (*ITAG) Solyc04g015160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5339830-5347460 transcript_region:SL2.40ch04:5339830..5347460+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KCE5_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00048756g0009.1 protein AED:0.16 eAED:0.16 QI:64|0.87|0.77|1|1|1|9|29|248; (*GB) gi|255568114|ref|XP_002525033.1| (e_value=1e-49) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G15950.1 (e_value=4e-40) | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, Rpb4, core protein | chr4:9040743-9041994 FORWARD LENGTH=205;; (*ITAG) Solyc04g015180.2.1 (e_value=3e-60) genomic_reference:SL2.40ch04 gene_region:5368904-5370718 transcript_region:SL2.40ch04:5368904..5370718+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II polypeptide (AHRD V1 **-* B6SLK8_MAIZE)"; GO:0003899 NbS00048756g0015.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|344; (*GB) gi|224124850|ref|XP_002329964.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M088|E135_ARATH (e_value=4e-108) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT4G17180.1 (e_value=2e-179) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:9646541-9648045 FORWARD LENGTH=475;; (*ITAG) Solyc04g015190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5371233-5375212 transcript_region:SL2.40ch04:5371233..5375212- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00049197g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|256|234; (*GB) gi|365818545|gb|AEX00361.1| (e_value=2e-92) IAA19 [Solanum lycopersicum];; (*SWP) sp|P13088|AUX22_SOYBN (e_value=7e-68) Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1;; (*TAIR) AT3G15540.1 (e_value=2e-56) | Symbols: IAA19, MSG2 | indole-3-acetic acid inducible 19 | chr3:5264100-5265378 FORWARD LENGTH=197;; (*ITAG) Solyc03g120380.2.1 (e_value=5e-95) genomic_reference:SL2.40ch03 gene_region:62855821-62857611 transcript_region:SL2.40ch03:62855821..62857611+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00022482g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.7|0.45|0.90|0.5|0.54|11|170|596; (*GB) gi|225466249|ref|XP_002268272.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein ROC8 [Vitis vinifera];; (*SWP) sp|Q69T58|ROC8_ORYSJ (e_value=7e-143) Homeobox-leucine zipper protein ROC8 OS=Oryza sativa subsp. japonica GN=ROC8 PE=2 SV=2;; (*TAIR) AT3G03260.1 (e_value=5e-140) | Symbols: HDG8 | homeodomain GLABROUS 8 | chr3:755356-759234 REVERSE LENGTH=699;; (*ITAG) Solyc10g018000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6301964-6308661 transcript_region:SL2.40ch10:6301964..6308661- go_terms:GO:0003700,GO:0043565 functional_description:"Homeodomain-containing transcription factor FWA (AHRD V1 **** B5BPG1_ARALY); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700,GO:0043565 NbS00022482g0011.1 protein AED:0.24 eAED:0.24 QI:73|0.85|0.86|1|0.78|0.73|15|324|418; (*GB) gi|940877|emb|CAA53300.1| (e_value=0.0) isocitrate dehydrogenase (NADP+) [Solanum tuberosum];; (*SWP) sp|P50218|IDHC_TOBAC (e_value=0.0) Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G65930.1 (e_value=0.0) | Symbols: cICDH | cytosolic NADP+-dependent isocitrate dehydrogenase | chr1:24539088-24541861 FORWARD LENGTH=410;; (*ITAG) Solyc11g011930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4860240-4865923 transcript_region:SL2.40ch11:4860240..4865923- go_terms:GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- D2D324_GOSHI); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0055114 NbS00032423g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0|1|0|0|4|0|206; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=3e-36) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=8e-38) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26230.1 (e_value=5e-30) | Symbols: CYP71B24 | cytochrome P450, family 71, subfamily B, polypeptide 24 | chr3:9598200-9599892 REVERSE LENGTH=498;; (*ITAG) Solyc08g005650.2.1 (e_value=2e-54) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032423g0011.1 protein AED:0.01 eAED:0.01 QI:88|1|1|1|1|1|2|335|123; (*GB) gi|33667910|gb|AAQ24534.1| (e_value=3e-54) SWIb domain-containing protein [Solanum chacoense];; (*SWP) sp|Q08747|UAF30_YEAST (e_value=3e-15) Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1;; (*TAIR) AT2G35605.1 (e_value=5e-39) | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:14946161-14947027 FORWARD LENGTH=109;; (*ITAG) Solyc08g005590.2.1 (e_value=5e-58) genomic_reference:SL2.40ch08 gene_region:441919-444485 transcript_region:SL2.40ch08:441919..444485+ functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- B1LUR3_METRJ); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00032423g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|0.77|1|0.87|0.77|9|464|469; (*GB) gi|356496494|ref|XP_003517102.1| (e_value=3e-151) PREDICTED: F-box protein SKIP31-like [Glycine max];; (*SWP) sp|Q9FHK0|SKI31_ARATH (e_value=1e-116) F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1;; (*TAIR) AT5G45360.1 (e_value=8e-118) | Symbols: | F-box family protein | chr5:18384783-18386670 REVERSE LENGTH=316;; (*ITAG) Solyc08g075380.2.1 (e_value=1e-179) genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00032423g0013.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|76 NbS00009604g0003.1 protein AED:0.41 eAED:0.46 QI:0|0|0|1|0|0|2|0|75 NbS00020785g0007.1 protein AED:0.26 eAED:0.26 QI:245|1|1|1|1|1|7|185|215; (*GB) gi|192910878|gb|ACF06547.1| (e_value=3e-157) Mob1 [Elaeis guineensis];; (*SWP) sp|Q8GYX0|MOB1_ARATH (e_value=6e-154) MOB kinase activator-like 1 OS=Arabidopsis thaliana GN=At4g19045 PE=2 SV=1;; (*TAIR) AT5G45550.1 (e_value=7e-159) | Symbols: | Mob1/phocein family protein | chr5:18462284-18464840 FORWARD LENGTH=215;; (*ITAG) Solyc08g075960.2.1 (e_value=1e-162) genomic_reference:SL2.40ch08 gene_region:57203421-57213282 transcript_region:SL2.40ch08:57203421..57213282+ go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6U9F2_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein "; GO:0019900 NbS00008194g0011.1 protein AED:0.04 eAED:0.04 QI:225|1|1|1|1|1|5|280|252; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=7e-147) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=1e-120) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=8e-122) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=1e-149) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00008194g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0.5|2|230|153; (*GB) gi|37704399|gb|AAR01504.1| (e_value=5e-34) cytosolic class I small heat shock protein 1A, partial [Nicotiana tabacum];; (*SWP) sp|P19036|HSP17_ARATH (e_value=2e-29) 17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2;; (*TAIR) AT3G46230.1 (e_value=2e-30) | Symbols: ATHSP17.4, HSP17.4 | heat shock protein 17.4 | chr3:16984263-16984733 REVERSE LENGTH=156;; (*ITAG) Solyc09g015020.1.1 (e_value=8e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7440133-7440597 transcript_region:SL2.40ch09:7440133..7440597+ go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00008194g0009.1 protein AED:0.18 eAED:0.18 QI:200|1|1|1|0.69|0.71|14|369|502; (*GB) gi|297738522|emb|CBI27767.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9P4|KASC2_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1;; (*TAIR) AT1G74960.3 (e_value=0.0) | Symbols: FAB1 | fatty acid biosynthesis 1 | chr1:28152564-28155948 REVERSE LENGTH=541;; (*ITAG) Solyc12g009260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2537941-2544921 transcript_region:SL2.40ch12:2537941..2544921+ go_terms:GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase II (AHRD V1 **** Q9Z6Z0_CHLPN); contains Interpro domain(s) IPR000794 Beta-ketoacyl synthase "; GO:0004315 NbS00016115g0014.1 protein AED:0.15 eAED:0.15 QI:134|1|1|1|0.75|0.92|13|360|469; (*GB) gi|359488915|ref|XP_002278099.2| (e_value=0.0) PREDICTED: protease Do-like 8, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LU10|DEGP8_ARATH (e_value=0.0) Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1;; (*TAIR) AT5G39830.1 (e_value=0.0) | Symbols: DEGP8, DEG8 | Trypsin family protein with PDZ domain | chr5:15942883-15945676 FORWARD LENGTH=448;; (*ITAG) Solyc02g067360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32135710-32140751 transcript_region:SL2.40ch02:32135710..32140751- go_terms:GO:0004252 functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** Q7UQ70_RHOBA); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "; GO:0004252 NbS00016115g0001.1 protein AED:0.33 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|92896037|gb|ABE93043.1| (e_value=1e-59) Harpin-induced 1 [Medicago truncatula];; (*TAIR) AT3G54200.1 (e_value=5e-44) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235;; (*ITAG) Solyc09g031920.1.1 (e_value=1e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:24061911-24062513 transcript_region:SL2.40ch09:24061911..24062513- functional_description:"Harpin-induced 1 (AHRD V1 ***- Q1STP6_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00016115g0017.1 protein AED:0.06 eAED:0.06 QI:416|0|0.16|1|0|0.16|6|0|664; (*GB) gi|296082919|emb|CBI22220.3| (e_value=4e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G39785.1 (e_value=4e-109) | Symbols: | Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606;; (*ITAG) Solyc02g067350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32132500-32135607 transcript_region:SL2.40ch02:32132500..32135607+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00016115g0018.1 protein AED:0.64 eAED:0.64 QI:0|0|0.5|0.5|0|0|2|0|100 NbS00016115g0015.1 protein AED:0.71 eAED:0.92 QI:0|0|0|0.66|0|0|3|0|155 NbS00025628g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|264; (*GB) gi|224108671|ref|XP_002314930.1| (e_value=6e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT5G49400.1 (e_value=1e-54) | Symbols: | zinc knuckle (CCHC-type) family protein | chr5:20031154-20031981 FORWARD LENGTH=275;; (*ITAG) Solyc01g060030.2.1 (e_value=2e-98) genomic_reference:SL2.40ch01 gene_region:62258951-62260745 transcript_region:SL2.40ch01:62258951..62260745+ functional_description:"Zinc finger CCHC domain-containing protein 10 (AHRD V1 *-*- B6TKA1_MAIZE)"; NbS00007003g0004.1 protein AED:0.28 eAED:0.28 QI:57|0.5|0.4|0.6|0.25|0.4|5|0|143; (*GB) gi|297738451|emb|CBI27652.3| (e_value=5e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g007330.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00059948g0003.1 protein AED:0.31 eAED:0.49 QI:0|0|0|1|1|1|2|0|218 NbS00000026g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|263; (*GB) gi|225431517|ref|XP_002275141.1| (e_value=8e-59) PREDICTED: transcription factor HEC3-like [Vitis vinifera];; (*SWP) sp|Q9LXD8|HEC3_ARATH (e_value=1e-42) Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1;; (*TAIR) AT5G09750.1 (e_value=8e-44) | Symbols: HEC3 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:3026401-3027075 REVERSE LENGTH=224;; (*ITAG) Solyc11g005780.1.1 (e_value=1e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:637406-638257 transcript_region:SL2.40ch11:637406..638257+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- D3Y275_BRARP); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0006355,GO:0045449 NbS00007452g0005.1 protein AED:0.19 eAED:0.19 QI:151|0.75|0.6|0.8|0.25|0.4|5|0|243; (*GB) gi|356541727|ref|XP_003539325.1| (e_value=5e-53) PREDICTED: F-box-like/WD repeat-containing protein ebi-like [Glycine max];; (*SWP) sp|Q4R8H1|TBL1X_MACFA (e_value=1e-20) F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1;; (*TAIR) AT5G67320.1 (e_value=1e-43) | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613;; (*ITAG) Solyc04g078320.2.1 (e_value=3e-72) genomic_reference:SL2.40ch04 gene_region:60664444-60675242 transcript_region:SL2.40ch04:60664444..60675242- go_terms:GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00042073g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|255578597|ref|XP_002530160.1| (e_value=4e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04820.1 (e_value=1e-28) | Symbols: ATOFP13, OFP13 | ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260;; (*ITAG) Solyc01g007810.1.1 (e_value=5e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1971082-1971978 transcript_region:SL2.40ch01:1971082..1971978- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00015908g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.73|1|0.28|0.46|15|502|864; (*GB) gi|359492364|ref|XP_002284611.2| (e_value=0.0) PREDICTED: DNA topoisomerase 2-binding protein 1-B-like [Vitis vinifera];; (*SWP) sp|Q92547|TOPB1_HUMAN (e_value=1e-23) DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1 SV=3;; (*TAIR) AT1G77320.1 (e_value=0.0) | Symbols: MEI1 | transcription coactivators | chr1:29056740-29062710 FORWARD LENGTH=972;; (*ITAG) Solyc01g068260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69767291-69780529 transcript_region:SL2.40ch01:69767291..69780529- go_terms:GO:0003713 functional_description:"BRCT domain-containing protein (AHRD V1 *--- D3BB36_POLPA); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713 NbS00001258g0009.1 protein AED:0.17 eAED:0.17 QI:174|0.6|0.66|1|0.8|0.83|6|0|366; (*GB) gi|225460240|ref|XP_002281119.1| (e_value=0.0) PREDICTED: 12-oxophytodienoate reductase 2 [Vitis vinifera];; (*SWP) sp|Q9XG54|OPR1_SOLLC (e_value=0.0) 12-oxophytodienoate reductase 1 OS=Solanum lycopersicum GN=OPR1 PE=1 SV=1;; (*TAIR) AT1G76690.1 (e_value=0.0) | Symbols: OPR2, ATOPR2 | 12-oxophytodienoate reductase 2 | chr1:28778976-28780355 FORWARD LENGTH=374;; (*ITAG) Solyc10g086220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64445388-64446720 transcript_region:SL2.40ch10:64445388..64446720- go_terms:GO:0008152,GO:0016491 functional_description:"Flavin oxidoreductase/NADH oxidase (AHRD V1 **-- A0YMI2_LYNSP); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0008152,GO:0016491 NbS00001258g0010.1 protein AED:0.33 eAED:0.33 QI:0|0.85|0.86|0.93|0.78|0.86|15|402|439; (*GB) gi|350540012|ref|NP_001234868.1| (e_value=0.0) WD-40 repeat protein [Solanum lycopersicum];; (*SWP) sp|Q5ZME8|SMU1_CHICK (e_value=0.0) WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1;; (*TAIR) AT1G73720.1 (e_value=0.0) | Symbols: SMU1 | transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511;; (*ITAG) Solyc06g064830.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36785363-36796963 transcript_region:SL2.40ch06:36785363..36796963- go_terms:GO:0003714 functional_description:"WD-40 repeat protein (AHRD V1 **-- Q94IP9_SOLLC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00007138g0016.1 protein AED:0.12 eAED:0.12 QI:359|0.85|0.75|1|0.42|0.37|8|1054|258; (*GB) gi|224126659|ref|XP_002319894.1| (e_value=2e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q803I8|SYVN1_DANRE (e_value=5e-43) E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2;; (*TAIR) AT3G16090.1 (e_value=5e-132) | Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492;; (*ITAG) Solyc03g096930.2.1 (e_value=2e-124) genomic_reference:SL2.40ch03 gene_region:52757804-52765180 transcript_region:SL2.40ch03:52757804..52765180- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 **-- Q4WCD2_ASPFU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007138g0013.1 protein AED:0.20 eAED:0.20 QI:415|0.93|0.93|1|0.93|0.93|31|696|1063; (*GB) gi|350535206|ref|NP_001234182.1| (e_value=0.0) exportin 1 [Solanum lycopersicum];; (*SWP) sp|Q6P5F9|XPO1_MOUSE (e_value=0.0) Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1;; (*TAIR) AT5G17020.1 (e_value=0.0) | Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1075;; (*ITAG) Solyc03g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "; GO:0005049 NbS00007138g0014.1 protein AED:0.22 eAED:0.22 QI:159|1|1|1|0.88|0.94|18|471|875; (*GB) gi|297737338|emb|CBI26539.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O52177|RELA_MYXXA (e_value=2e-35) GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=2e-45) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g096900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52711245-52720659 transcript_region:SL2.40ch03:52711245..52720659- go_terms:GO:0015969,GO:0003824 functional_description:"GTP pyrophosphokinase (AHRD V1 *--- A4AJW6_9ACTN); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0003824 NbS00016091g0001.1 protein AED:0.00 eAED:0.00 QI:19|0|0.5|1|0|0.5|2|294|355; (*GB) gi|255545450|ref|XP_002513785.1| (e_value=3e-101) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=6e-37) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT1G60360.1 (e_value=2e-70) | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731 REVERSE LENGTH=327;; (*ITAG) Solyc11g012950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5796734-5797823 transcript_region:SL2.40ch11:5796734..5797823+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033044g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|317106708|dbj|BAJ53208.1| (e_value=4e-30) JHL06B08.10 [Jatropha curcas];; (*SWP) sp|A2RVQ5|AGL16_ARATH (e_value=3e-29) Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1;; (*TAIR) AT3G57230.1 (e_value=2e-30) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc02g071730.2.1 (e_value=1e-28) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00041551g0009.1 protein AED:0.32 eAED:0.57 QI:0|0|0|1|1|1|2|0|84; (*GB) gi|297738754|emb|CBI27999.3| (e_value=4e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=3e-23) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=2e-24) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc11g039910.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:27428612-27429313 transcript_region:SL2.40ch11:27428612..27429313+ go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00041551g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|705; (*GB) gi|225437689|ref|XP_002279803.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264112 [Vitis vinifera];; (*SWP) sp|Q3A097|TOLB_PELCD (e_value=5e-15) Protein TolB OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tolB PE=3 SV=1;; (*TAIR) AT4G01870.1 (e_value=0.0) | Symbols: | tolB protein-related | chr4:808473-810431 REVERSE LENGTH=652;; (*ITAG) Solyc06g008620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2517512-2519494 transcript_region:SL2.40ch06:2517512..2519494- functional_description:"Protein tolB (AHRD V1 *-*- D3SF14_THISK); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00041551g0005.1 protein AED:0.20 eAED:0.27 QI:0|1|0.5|1|0|0|2|169|98 NbS00041551g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.57|1|0|0.14|7|375|195; (*GB) gi|356536663|ref|XP_003536856.1| (e_value=4e-27) PREDICTED: uncharacterized protein LOC100775788 [Glycine max];; (*TAIR) AT1G10660.1 (e_value=6e-20) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:3533009-3534781 FORWARD LENGTH=320;; (*ITAG) Solyc06g009380.2.1 (e_value=3e-54) genomic_reference:SL2.40ch06 gene_region:3296045-3299359 transcript_region:SL2.40ch06:3296045..3299359- functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00051394g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|45935117|gb|AAS79575.1| (e_value=2e-13) hypothetical protein [Ipomoea trifida];; (*ITAG) Solyc11g066460.1.1 (e_value=3e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49295188-49295838 transcript_region:SL2.40ch11:49295188..49295838+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051394g0010.1 protein AED:0.02 eAED:0.02 QI:149|1|1|1|0.5|0.2|5|356|88; (*GB) gi|351725771|ref|NP_001237104.1| (e_value=5e-48) cyclin-dependent kinases regulatory subunit [Glycine max];; (*SWP) sp|Q6PS57|CKS1_ORYSJ (e_value=2e-48) Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica GN=CKS1 PE=2 SV=1;; (*TAIR) AT2G27970.1 (e_value=2e-48) | Symbols: CKS2 | CDK-subunit 2 | chr2:11912460-11913112 REVERSE LENGTH=83; NbS00051394g0011.1 protein AED:0.09 eAED:0.09 QI:381|0.93|0.94|1|1|1|17|564|1008; (*GB) gi|45935119|gb|AAS79577.1| (e_value=0.0) putative PHD zinc finger protein [Ipomoea trifida];; (*SWP) sp|O43918|AIRE_HUMAN (e_value=3e-11) Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1;; (*TAIR) AT2G27980.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:11913950-11919741 REVERSE LENGTH=1072;; (*ITAG) Solyc11g066480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49301651-49310530 transcript_region:SL2.40ch11:49301651..49310530- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7LJU5_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00010757g0001.1 protein AED:0.11 eAED:0.11 QI:473|1|1|1|0.71|0.75|8|437|351; (*GB) gi|225437380|ref|XP_002268904.1| (e_value=0.0) PREDICTED: monoglyceride lipase isoform 1 [Vitis vinifera];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=7e-32) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT3G62860.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:23239577-23242143 REVERSE LENGTH=348;; (*ITAG) Solyc09g075140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62435204-62439921 transcript_region:SL2.40ch09:62435204..62439921- go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0008289,GO:0004622 NbS00010757g0002.1 protein AED:0.41 eAED:0.42 QI:185|1|0.6|1|1|1|5|0|108; (*GB) gi|224068340|ref|XP_002302713.1| (e_value=5e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VI10|SMD2_DROME (e_value=3e-46) Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=3 SV=1;; (*TAIR) AT3G62840.2 (e_value=2e-70) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:23235727-23236615 REVERSE LENGTH=108;; (*ITAG) Solyc09g075130.2.1 (e_value=1e-71) genomic_reference:SL2.40ch09 gene_region:62428848-62432417 transcript_region:SL2.40ch09:62428848..62432417- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein-like protein (AHRD V1 ***- Q8L3W7_ARATH); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00010757g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.83|0.71|1|1|1|7|0|431; (*GB) gi|48093465|gb|AAT40109.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 3 [Nicotiana tabacum];; (*SWP) sp|Q5R885|UXS1_PONAB (e_value=6e-135) UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1;; (*TAIR) AT3G62830.2 (e_value=0.0) | Symbols: UXS2, ATUXS2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:23232539-23235353 FORWARD LENGTH=445;; (*ITAG) Solyc12g099480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64957950-64961604 transcript_region:SL2.40ch12:64957950..64961604+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_PHOLL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00017330g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|656; (*GB) gi|224081377|ref|XP_002306389.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=0.0) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2271065-2273350 transcript_region:SL2.40ch02:2271065..2273350- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00017330g0007.1 protein AED:0.42 eAED:0.44 QI:0|0|0|1|1|1|2|0|180; (*GB) gi|225462568|ref|XP_002268262.1| (e_value=3e-51) PREDICTED: thioredoxin X, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8LD49|TRXX_ARATH (e_value=1e-49) Thioredoxin X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2;; (*TAIR) AT1G50320.1 (e_value=1e-50) | Symbols: ATHX, ATX, THX | thioredoxin X | chr1:18638606-18639464 REVERSE LENGTH=182;; (*ITAG) Solyc01g008250.2.1 (e_value=3e-71) genomic_reference:SL2.40ch01 gene_region:2375077-2377870 transcript_region:SL2.40ch01:2375077..2377870- go_terms:GO:0045454 functional_description:"Thioredoxin X (AHRD V1 ***- B6T9S0_MAIZE); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00017330g0006.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|64 NbS00056986g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|267; (*GB) gi|255538794|ref|XP_002510462.1| (e_value=5e-52) Dehydration-responsive element-binding protein 2G, putative [Ricinus communis];; (*SWP) sp|Q9LQZ2|DRE2D_ARATH (e_value=6e-37) Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1;; (*TAIR) AT1G75490.1 (e_value=5e-38) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:28336045-28336665 FORWARD LENGTH=206;; (*ITAG) Solyc04g080910.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62552994-62553740 transcript_region:SL2.40ch04:62552994..62553740+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00056986g0008.1 protein AED:0.26 eAED:0.26 QI:84|0.88|0.9|1|0.88|0.8|10|513|486; (*GB) gi|302142573|emb|CBI19776.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B5YEQ1|OBG_DICT6 (e_value=6e-37) GTPase obg OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=obg PE=3 SV=1;; (*TAIR) AT5G18570.1 (e_value=4e-26) | Symbols: EMB269, ATOBGC, CPSAR1 | GTP1/OBG family protein | chr5:6171839-6174823 REVERSE LENGTH=681;; (*ITAG) Solyc04g080900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62536299-62548561 transcript_region:SL2.40ch04:62536299..62548561+ go_terms:GO:0006508,GO:0005525,GO:0005622 functional_description:"GTPase obg (AHRD V1 *-*- D1C1Q0_SPHTD); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0006508,GO:0005525,GO:0005622 NbS00001636g0003.1 protein AED:0.18 eAED:0.18 QI:877|1|1|1|0.63|0.65|20|143|797; (*GB) gi|255549852|ref|XP_002515977.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0.0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.1 (e_value=0.0) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836;; (*ITAG) Solyc12g044410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44793673-44801092 transcript_region:SL2.40ch12:44793673..44801092+ go_terms:GO:0006355,GO:0045449 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0006355,GO:0045449 NbS00008808g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.96|0.89|0.96|0.85|0.89|29|0|995; (*GB) gi|357441255|ref|XP_003590905.1| (e_value=0.0) O-linked GlcNAc transferase like protein [Medicago truncatula];; (*SWP) sp|Q9M8Y0|SEC_ARATH (e_value=0.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1;; (*TAIR) AT3G04240.1 (e_value=0.0) | Symbols: SEC | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1114187-1120722 REVERSE LENGTH=977;; (*ITAG) Solyc09g097830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67099611-67111955 transcript_region:SL2.40ch09:67099611..67111955+ go_terms:GO:0016262 functional_description:"TPR repeat protein (AHRD V1 **-- B0JK10_MICAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0016262 NbS00008808g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.91|1|0.90|0.91|12|583|774; (*GB) gi|359478005|ref|XP_002268633.2| (e_value=0.0) PREDICTED: protein transport protein SEC23-like [Vitis vinifera];; (*SWP) sp|Q4PE39|SEC23_USTMA (e_value=0.0) Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1;; (*TAIR) AT1G05520.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr1:1631126-1635703 REVERSE LENGTH=783;; (*ITAG) Solyc05g053830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63004325-63011970 transcript_region:SL2.40ch05:63004325..63011970- go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00034107g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.9|0.81|1|0.8|0.81|11|0|474; (*GB) gi|62822992|gb|AAY15214.1| (e_value=0.0) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|Q41558|HBP1C_WHEAT (e_value=4e-93) Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G06839.3 (e_value=9e-165) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g078670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59726600-59732997 transcript_region:SL2.40ch10:59726600..59732997- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00037428g0004.1 protein AED:0.24 eAED:0.27 QI:0|0.53|0.42|1|0.84|0.64|14|0|1064; (*GB) gi|225439033|ref|XP_002263744.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248418 [Vitis vinifera];; (*TAIR) AT5G24710.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00037428g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0|2|0|138 NbS00002903g0004.1 protein AED:0.09 eAED:0.10 QI:0|0|0.5|1|0|0.5|2|123|452; (*GB) gi|224068030|ref|XP_002302653.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46630.1 (e_value=6e-17) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). | chr2:19145529-19146713 FORWARD LENGTH=394;; (*ITAG) Solyc08g067370.1.1 (e_value=1e-97) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:53623441-53624739 transcript_region:SL2.40ch08:53623441..53624739- functional_description:"Unknown Protein (AHRD V1)"; NbS00002903g0001.1 protein AED:0.30 eAED:0.30 QI:105|1|1|1|1|1|3|376|162; (*GB) gi|225430161|ref|XP_002284766.1| (e_value=2e-103) PREDICTED: N-alpha-acetyltransferase 50 [Vitis vinifera];; (*SWP) sp|Q6GP53|NAA50_XENLA (e_value=5e-54) N-alpha-acetyltransferase 50 OS=Xenopus laevis GN=naa50 PE=2 SV=1;; (*TAIR) AT5G11340.1 (e_value=3e-95) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:3619226-3621068 FORWARD LENGTH=164;; (*ITAG) Solyc08g067440.1.1 (e_value=9e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:53691203-53694585 transcript_region:SL2.40ch08:53691203..53694585- go_terms:GO:0005515 functional_description:"N-acetyltransferase (AHRD V1 ***- Q1HQ22_BOMMO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0005515 NbS00002903g0012.1 protein AED:0.13 eAED:0.13 QI:260|0.66|0.71|1|0.33|0.42|7|216|206; (*GB) gi|225430159|ref|XP_002284759.1| (e_value=3e-82) PREDICTED: uncharacterized protein LOC100249178 [Vitis vinifera];; (*TAIR) AT2G25605.1 (e_value=3e-77) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr2:10899541-10900875 FORWARD LENGTH=200;; (*ITAG) Solyc08g067430.2.1 (e_value=3e-94) genomic_reference:SL2.40ch08 gene_region:53686130-53690841 transcript_region:SL2.40ch08:53686130..53690841+ functional_description:"cDNA clone 002-182-C01 full insert sequence (AHRD V1 *-*- B7F3P2_ORYSJ)"; NbS00002903g0010.1 protein AED:0.00 eAED:0.17 QI:0|1|0.5|1|0|0.5|2|0|194; (*GB) gi|359476094|ref|XP_002282215.2| (e_value=6e-36) PREDICTED: uncharacterized protein LOC100259398 [Vitis vinifera];; (*ITAG) Solyc08g067390.2.1 (e_value=3e-52) genomic_reference:SL2.40ch08 gene_region:53631177-53633631 transcript_region:SL2.40ch08:53631177..53633631+ functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 *-*- B6RN16_9ROSI); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; NbS00018786g0015.1 protein AED:0.45 eAED:0.46 QI:84|1|0.75|1|0.66|0.5|4|0|106; (*GB) gi|225459042|ref|XP_002285630.1| (e_value=6e-68) PREDICTED: transcription initiation factor IIA subunit 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q39236|T2AG_ARATH (e_value=3e-68) Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2;; (*TAIR) AT4G24440.2 (e_value=2e-69) | Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106;; (*ITAG) Solyc12g088030.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61971197-61976224 transcript_region:SL2.40ch12:61971197..61976224- go_terms:GO:0005672 functional_description:"Transcription initiation factor IIA subunit 2 (AHRD V1 ***- B5X5Y3_SALSA); contains Interpro domain(s) IPR003194 Transcription initiation factor IIA, gamma subunit "; GO:0005672 NbS00018786g0016.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|147; (*GB) gi|256141|gb|AAB23378.1| (e_value=2e-58) orf [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=3e-39) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70890.1 (e_value=6e-39) | Symbols: MLP43 | MLP-like protein 43 | chr1:26725912-26726489 REVERSE LENGTH=158;; (*ITAG) Solyc04g007790.2.1 (e_value=6e-59) genomic_reference:SL2.40ch04 gene_region:1474832-1476779 transcript_region:SL2.40ch04:1474832..1476779+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00018786g0017.1 protein AED:0.66 eAED:0.68 QI:0|0.33|0.14|0.42|1|1|7|0|179; (*GB) gi|76556494|emb|CAJ32462.1| (e_value=1e-84) putative cytosolic cysteine synthase 7 [Nicotiana tabacum];; (*SWP) sp|O81154|CYSK_SOLTU (e_value=1e-79) Cysteine synthase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G14880.4 (e_value=3e-70) | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322;; (*ITAG) Solyc09g082060.2.1 (e_value=4e-80) genomic_reference:SL2.40ch09 gene_region:63298831-63303187 transcript_region:SL2.40ch09:63298831..63303187+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q3LAG5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00017125g0010.1 protein AED:0.00 eAED:0.00 QI:159|1|1|1|0.5|0.66|3|440|292; (*GB) gi|356526882|ref|XP_003532045.1| (e_value=9e-101) PREDICTED: uncharacterized protein LOC100785006 [Glycine max];; (*TAIR) AT1G59710.1 (e_value=3e-92) | Symbols: | Protein of unknown function (DUF569) | chr1:21938623-21939673 FORWARD LENGTH=300;; (*ITAG) Solyc02g067490.2.1 (e_value=2e-162) genomic_reference:SL2.40ch02 gene_region:32258718-32260274 transcript_region:SL2.40ch02:32258718..32260274- functional_description:"At1g59710-like protein (Fragment) (AHRD V1 *-*- C7FCK4_ARALP); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00017125g0012.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|0.5|0.33|3|0|422; (*GB) gi|730291|sp|P40972.1|PEL_TOBAC (e_value=0.0) RecName: Full=Pectate lyase; Flags: Precursor;; (*SWP) sp|P40972|PLY_TOBAC (e_value=0.0) Pectate lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=6e-134) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc02g067450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32221607-32227249 transcript_region:SL2.40ch02:32221607..32227249- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00017125g0011.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|121; (*GB) gi|224080015|ref|XP_002305991.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT3G28630.1 (e_value=9e-20) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=335;; (*ITAG) Solyc02g067510.2.1 (e_value=2e-47) genomic_reference:SL2.40ch02 gene_region:32264993-32265936 transcript_region:SL2.40ch02:32264993..32265936+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 ***- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00035492g0003.1 protein AED:0.25 eAED:0.26 QI:0|1|0.5|1|1|1|2|42|186; (*GB) gi|62867582|emb|CAI84656.1| (e_value=2e-109) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G07470.1 (e_value=3e-56) | Symbols: | Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169;; (*ITAG) Solyc06g007620.2.1 (e_value=4e-73) genomic_reference:SL2.40ch06 gene_region:1625363-1627604 transcript_region:SL2.40ch06:1625363..1627604- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00000388g0004.1 protein AED:0.07 eAED:0.07 QI:38|1|0.85|1|0.33|0.57|7|259|227; (*GB) gi|224062379|ref|XP_002300825.1| (e_value=2e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54W07|BUD32_DICDI (e_value=8e-63) Probable serine/threonine-protein kinase BUD32 homolog OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1;; (*TAIR) AT5G26110.1 (e_value=1e-134) | Symbols: | Protein kinase superfamily protein | chr5:9118239-9119352 REVERSE LENGTH=226;; (*ITAG) Solyc06g084160.2.1 (e_value=1e-138) genomic_reference:SL2.40ch06 gene_region:45662381-45666602 transcript_region:SL2.40ch06:45662381..45666602+ go_terms:GO:0004674,GO:0002039 functional_description:"Serine/threonine-protein kinase bud32 (EC 2.7.11.1) (AHRD V1 **** C8VPJ3_EMENI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0002039 NbS00000388g0006.1 protein AED:0.08 eAED:0.29 QI:0|0|0|1|0|0|3|0|239; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=8e-17) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*TAIR) AT2G23810.1 (e_value=3e-16) | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352 REVERSE LENGTH=273;; (*ITAG) Solyc12g038410.1.1 (e_value=5e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35493064-35494495 transcript_region:SL2.40ch12:35493064..35494495+ go_terms:GO:0016021 functional_description:"Senescence-associated protein-like (AHRD V1 ***- Q9SUD4_ARATH); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00000388g0103.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|123 NbS00000388g0117.1 protein AED:0.38 eAED:0.43 QI:7|0.75|0.6|1|0.75|0.6|5|0|130 NbS00000388g0119.1 protein AED:0.16 eAED:0.16 QI:498|0.33|0.5|1|0.66|0.5|4|50|107 NbS00000388g0116.1 protein AED:0.21 eAED:0.21 QI:216|0.57|0.37|1|0.85|1|8|319|459 NbS00000388g0118.1 protein AED:0.25 eAED:0.25 QI:172|0.76|0.78|1|0.46|0.5|14|206|671 NbS00001784g0009.1 protein AED:0.20 eAED:0.20 QI:682|1|0.75|1|1|1|4|0|472; (*GB) gi|224116342|ref|XP_002317274.1| (e_value=3e-151) predicted protein [Populus trichocarpa];; (*TAIR) AT1G61740.1 (e_value=5e-130) | Symbols: | Sulfite exporter TauE/SafE family protein | chr1:22798365-22801020 REVERSE LENGTH=458;; (*ITAG) Solyc02g079980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38924299-38926747 transcript_region:SL2.40ch02:38924299..38926747- go_terms:GO:0005515 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0005515 NbS00001784g0010.1 protein AED:0.24 eAED:0.24 QI:609|0.75|0.8|1|0.5|0.8|5|633|243; (*GB) gi|359497014|ref|XP_002273184.2| (e_value=3e-91) PREDICTED: transcription factor ILR3-like [Vitis vinifera];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=2e-75) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=1e-76) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc02g079970.2.1 (e_value=4e-155) genomic_reference:SL2.40ch02 gene_region:38920797-38923810 transcript_region:SL2.40ch02:38920797..38923810+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00001784g0008.1 protein AED:0.35 eAED:0.35 QI:118|1|1|1|1|1|3|492|126; (*GB) gi|4928460|gb|AAD33596.1|AF133127_1 (e_value=2e-56) thioredoxin h [Hevea brasiliensis];; (*SWP) sp|Q8LDI5|CXXS1_ARATH (e_value=9e-48) Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2;; (*TAIR) AT1G11530.1 (e_value=7e-49) | Symbols: ATCXXS1, CXXS1 | C-terminal cysteine residue is changed to a serine 1 | chr1:3874518-3875311 FORWARD LENGTH=118;; (*ITAG) Solyc02g079960.2.1 (e_value=3e-73) genomic_reference:SL2.40ch02 gene_region:38911296-38915191 transcript_region:SL2.40ch02:38911296..38915191+ go_terms:GO:0045454 functional_description:"Thioredoxin h (AHRD V1 ***- Q9XF70_HEVBR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00024008g0002.1 protein AED:0.20 eAED:0.36 QI:0|0|0|1|0|0|4|0|155; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-20) hypothetical protein [Nicotiana tabacum]; NbS00033719g0002.1 protein AED:0.54 eAED:0.63 QI:0|0|0|0.5|1|1|4|0|131 NbS00033719g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.66|3|0|339; (*GB) gi|255571025|ref|XP_002526463.1| (e_value=6e-151) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*SWP) sp|Q96330|FLS1_ARATH (e_value=2e-42) Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1;; (*TAIR) AT2G44800.1 (e_value=2e-146) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:18467004-18468551 FORWARD LENGTH=357;; (*ITAG) Solyc09g008560.2.1 (e_value=1e-84) genomic_reference:SL2.40ch09 gene_region:2048866-2052899 transcript_region:SL2.40ch09:2048866..2052899+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00050133g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|225449242|ref|XP_002280264.1| (e_value=2e-76) PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=4e-16) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT5G01090.1 (e_value=6e-33) | Symbols: | Concanavalin A-like lectin family protein | chr5:33055-34116 FORWARD LENGTH=353;; (*ITAG) Solyc09g011840.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5120602-5121681 transcript_region:SL2.40ch09:5120602..5121681+ go_terms:GO:0005488 functional_description:"Receptor lectin kinase-like protein (AHRD V1 *-*- Q570D3_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005488 NbS00050133g0008.1 protein AED:0.21 eAED:0.21 QI:279|1|1|1|0.83|0.71|7|15|435; (*GB) gi|306991490|gb|ADN19206.1| (e_value=0.0) proline transporter 1 [Nicotiana tabacum];; (*SWP) sp|Q9LRB5|LHT2_ARATH (e_value=4e-27) Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1;; (*TAIR) AT2G39890.2 (e_value=0.0) | Symbols: PROT1, ATPROT1 | proline transporter 1 | chr2:16656022-16658202 FORWARD LENGTH=442;; (*ITAG) Solyc03g096390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51908885-51913544 transcript_region:SL2.40ch03:51908885..51913544- go_terms:GO:0015193 functional_description:"Amino acid permease-like protein proline transporter-like protein (AHRD V1 **** Q9FJ34_ARATH); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00061687g0003.1 protein AED:0.05 eAED:0.05 QI:158|1|1|1|1|1|2|926|495; (*GB) gi|255560443|ref|XP_002521236.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G17430.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr4:9725201-9726801 REVERSE LENGTH=507;; (*ITAG) Solyc08g078380.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59366607-59369289 transcript_region:SL2.40ch08:59366607..59369289+ go_terms:GO:0005975 functional_description:"CigA protein (AHRD V1 *-*- Q9HGR6_MUCCI)"; GO:0005975 NbS00035828g0004.1 protein AED:0.14 eAED:0.14 QI:158|0.75|0.8|1|0.75|0.8|5|3066|466; (*GB) gi|255566734|ref|XP_002524351.1| (e_value=3e-146) Alliin lyase precursor, putative [Ricinus communis];; (*SWP) sp|Q9FE98|TAR3_ARATH (e_value=2e-126) Tryptophan aminotransferase-related protein 3 OS=Arabidopsis thaliana GN=TAR3 PE=3 SV=1;; (*TAIR) AT1G34040.1 (e_value=1e-127) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:12374433-12376179 FORWARD LENGTH=457;; (*ITAG) Solyc02g062190.1.1 (e_value=1e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28355495-28357157 transcript_region:SL2.40ch02:28355495..28357157+ go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- D2CXF2_ALLSA); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00015061g0010.1 protein AED:0.24 eAED:0.24 QI:246|0.5|0.33|1|1|1|3|0|288; (*ITAG) Solyc06g050880.2.1 (e_value=4e-50) genomic_reference:SL2.40ch06 gene_region:30221194-30224955 transcript_region:SL2.40ch06:30221194..30224955+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015061g0012.1 protein AED:0.64 eAED:1.00 QI:36|0|0|1|0|0|3|228|11 NbS00018632g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|660; (*GB) gi|359484243|ref|XP_002273499.2| (e_value=2e-161) PREDICTED: uncharacterized protein LOC100257766 [Vitis vinifera];; (*SWP) sp|Q7Y201|PME13_ARATH (e_value=2e-144) Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2;; (*TAIR) AT2G26450.1 (e_value=2e-145) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614;; (*ITAG) Solyc07g017560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7530533-7533336 transcript_region:SL2.40ch07:7530533..7533336- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RR24_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00023676g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|434; (*GB) gi|225439825|ref|XP_002274179.1| (e_value=0.0) PREDICTED: protein GPR107-like [Vitis vinifera];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=1e-72) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT3G09570.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr3:2940524-2941843 FORWARD LENGTH=439;; (*ITAG) Solyc09g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:641683-644775 transcript_region:SL2.40ch09:641683..644775+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00000940g0007.1 protein AED:0.32 eAED:0.32 QI:49|1|0.33|1|1|0.66|3|0|145; (*GB) gi|356554564|ref|XP_003545615.1| (e_value=5e-46) PREDICTED: protein-tyrosine-phosphatase IBR5-like [Glycine max];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=4e-30) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=3e-31) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc07g049410.2.1 (e_value=5e-58) genomic_reference:SL2.40ch07 gene_region:56998369-57004964 transcript_region:SL2.40ch07:56998369..57004964- go_terms:GO:0005516 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0005516 NbS00000940g0008.1 protein AED:0.43 eAED:0.46 QI:97|0.75|0.8|1|0.75|1|5|0|126; (*GB) gi|225430537|ref|XP_002285578.1| (e_value=2e-69) PREDICTED: DNA-directed RNA polymerase II subunit RPB11 [Vitis vinifera];; (*SWP) sp|Q38859|RPB11_ARATH (e_value=1e-68) DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1;; (*TAIR) AT3G52090.1 (e_value=9e-70) | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116;; (*ITAG) Solyc11g069910.1.1 (e_value=9e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51605382-51607881 transcript_region:SL2.40ch11:51605382..51607881+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit J (AHRD V1 ***- B4FJS1_MAIZE); contains Interpro domain(s) IPR009025 DNA-directed RNA polymerase, RBP11-like "; GO:0006350 NbS00010006g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|0.75|4|0|435; (*GB) gi|359483450|ref|XP_003632960.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854830 [Vitis vinifera];; (*TAIR) AT3G20300.1 (e_value=2e-177) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc11g012000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4951033-4953728 transcript_region:SL2.40ch11:4951033..4953728+ functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00022995g0009.1 protein AED:0.16 eAED:0.16 QI:69|1|0.5|1|1|1|2|0|199; (*GB) gi|224093164|ref|XP_002309816.1| (e_value=2e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT2G31560.2 (e_value=8e-59) | Symbols: | Protein of unknown function (DUF1685) | chr2:13436611-13437312 FORWARD LENGTH=202;; (*ITAG) Solyc06g073450.2.1 (e_value=1e-106) genomic_reference:SL2.40ch06 gene_region:41661853-41663346 transcript_region:SL2.40ch06:41661853..41663346+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00022995g0011.1 protein AED:0.25 eAED:0.25 QI:573|0.37|0.55|1|0.75|0.66|9|496|554; (*GB) gi|30689342|ref|NP_850393.1| (e_value=2e-122) putative inositol transporter 1 [Arabidopsis thaliana];; (*SWP) sp|Q8VZR6|INT1_ARATH (e_value=7e-124) Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1;; (*TAIR) AT2G43330.1 (e_value=5e-125) | Symbols: ATINT1, INT1 | inositol transporter 1 | chr2:18001135-18003854 FORWARD LENGTH=509;; (*ITAG) Solyc06g073420.2.1 (e_value=2e-163) genomic_reference:SL2.40ch06 gene_region:41638998-41644448 transcript_region:SL2.40ch06:41638998..41644448+ go_terms:GO:0005366 functional_description:"Myo-inositol transporter 2 (AHRD V1 **** ITR2_SCHPO); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366 NbS00022995g0012.1 protein AED:0.40 eAED:0.46 QI:250|1|0.5|1|0|0|2|0|72; (*GB) gi|218193824|gb|EEC76251.1| (e_value=8e-33) hypothetical protein OsI_13694 [Oryza sativa Indica Group];; (*SWP) sp|Q5I7K3|RS29_WHEAT (e_value=6e-31) 40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=1 SV=1;; (*TAIR) AT4G33865.1 (e_value=1e-31) | Symbols: | Ribosomal protein S14p/S29e family protein | chr4:16233395-16234114 REVERSE LENGTH=56;; (*ITAG) Solyc06g073430.2.1 (e_value=7e-37) genomic_reference:SL2.40ch06 gene_region:41644320-41646138 transcript_region:SL2.40ch06:41644320..41646138+ go_terms:GO:0003735 functional_description:"40S ribosomal protein S29 (AHRD V1 ***- A2ZG71_ORYSI); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735 NbS00022995g0014.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.57|1|0.66|0.71|7|38|203; (*GB) gi|350537823|ref|NP_001233800.1| (e_value=4e-106) phospholipid hydroperoxide glutathione peroxidase [Solanum lycopersicum];; (*SWP) sp|O04922|GPX2_ARATH (e_value=7e-89) Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1;; (*TAIR) AT2G31570.1 (e_value=5e-90) | Symbols: ATGPX2, GPX2 | glutathione peroxidase 2 | chr2:13438211-13439775 REVERSE LENGTH=169;; (*ITAG) Solyc06g073460.2.1 (e_value=8e-109) genomic_reference:SL2.40ch06 gene_region:41664038-41668089 transcript_region:SL2.40ch06:41664038..41668089- go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- Q7XZS6_SOLLC); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00030144g0004.1 protein AED:0.15 eAED:0.15 QI:35|1|0.9|1|0.77|0.9|10|0|424; (*GB) gi|225452686|ref|XP_002276826.1| (e_value=0.0) PREDICTED: protein midA, mitochondrial [Vitis vinifera];; (*SWP) sp|Q54S83|MIDA_DICDI (e_value=9e-99) Protein midA, mitochondrial OS=Dictyostelium discoideum GN=midA PE=2 SV=1;; (*TAIR) AT3G28700.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF185) | chr3:10759580-10761834 FORWARD LENGTH=471;; (*ITAG) Solyc02g087640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44585290-44590007 transcript_region:SL2.40ch02:44585290..44590007- go_terms:GO:0005515,GO:0008270 functional_description:"Protein midA homolog, mitochondrial (AHRD V1 **-- MIDA_DANRE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; GO:0005515,GO:0008270 NbS00039087g0003.1 protein AED:0.40 eAED:0.40 QI:0|1|0.33|1|1|1|3|0|141; (*GB) gi|356533299|ref|XP_003535203.1| (e_value=7e-42) PREDICTED: protein fluG-like [Glycine max];; (*SWP) sp|Q86B00|GLNA1_DICDI (e_value=4e-13) Type-1 glutamine synthetase 1 OS=Dictyostelium discoideum GN=glnA1 PE=3 SV=1;; (*TAIR) AT3G53180.1 (e_value=1e-35) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083830.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62894379-62902328 transcript_region:SL2.40ch10:62894379..62902328- go_terms:GO:0008152,GO:0005524,GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0008152,GO:0005524,GO:0006807,GO:0003824 NbS00017213g0016.1 protein AED:0.27 eAED:0.29 QI:178|0.7|0.72|1|0.9|0.81|11|320|318; (*GB) gi|1848212|emb|CAA72092.1| (e_value=0.0) protein disulfide-isomerase precursor [Nicotiana tabacum];; (*SWP) sp|P38661|PDIA6_MEDSA (e_value=7e-151) Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1;; (*TAIR) AT2G47470.1 (e_value=4e-144) | Symbols: ATPDIL2-1, UNE5, MEE30, PDI11, ATPDI11 | thioredoxin family protein | chr2:19481503-19483683 FORWARD LENGTH=361;; (*ITAG) Solyc01g100320.2.1 (e_value=2e-180) genomic_reference:SL2.40ch01 gene_region:82146954-82153414 transcript_region:SL2.40ch01:82146954..82153414- go_terms:GO:0003756 functional_description:"Thioredoxin/protein disulfide isomerase (AHRD V1 **** Q2U681_ASPOR); contains Interpro domain(s) IPR005788 Disulphide isomerase "; GO:0003756 NbS00017213g0021.1 protein AED:0.29 eAED:0.31 QI:766|0.6|0.66|1|0.2|0.16|6|366|300; (*GB) gi|225427788|ref|XP_002269318.1| (e_value=4e-109) PREDICTED: probable polyprenol reductase 2-like [Vitis vinifera];; (*SWP) sp|Q9SI62|POED2_ARATH (e_value=2e-82) Probable polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2;; (*TAIR) AT2G16530.1 (e_value=1e-83) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:7163276-7165064 REVERSE LENGTH=343;; (*ITAG) Solyc01g110460.2.1 (e_value=1e-156) genomic_reference:SL2.40ch01 gene_region:88914272-88922106 transcript_region:SL2.40ch01:88914272..88922106- go_terms:GO:0003865 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 **** D7M2L5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0003865 NbS00017213g0030.1 protein AED:0.12 eAED:0.12 QI:593|0.8|1|1|0.8|0.83|6|475|289; (*GB) gi|225427786|ref|XP_002269232.1| (e_value=0.0) PREDICTED: NADP-dependent D-sorbitol-6-phosphate dehydrogenase [Vitis vinifera];; (*SWP) sp|P28475|S6PD_MALDO (e_value=2e-147) NADP-dependent D-sorbitol-6-phosphate dehydrogenase OS=Malus domestica GN=S6PDH PE=2 SV=1;; (*TAIR) AT2G21250.1 (e_value=6e-179) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:9103408-9105116 REVERSE LENGTH=309;; (*ITAG) Solyc01g110450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88910585-88913966 transcript_region:SL2.40ch01:88910585..88913966+ go_terms:GO:0032866,GO:0032867 functional_description:"NADP dependent sorbitol 6-phosphate dehydrogenase (Fragment) (AHRD V1 **-- Q8S4S2_VAUCA); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00017213g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.75|1|1|1|4|326|615; (*GB) gi|225427794|ref|XP_002269363.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255631 [Vitis vinifera];; (*SWP) sp|Q69IL4|RF2A_ORYSJ (e_value=3e-34) Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=2e-127) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc01g110480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88940597-88943622 transcript_region:SL2.40ch01:88940597..88943622+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 *-*- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00017213g0029.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|313; (*GB) gi|319718193|gb|ADV59398.1| (e_value=0.0) GAGA-binding transcriptional activator [Solanum tuberosum];; (*SWP) sp|Q8S8C6|BPC4_ARATH (e_value=6e-106) Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1;; (*TAIR) AT2G21240.2 (e_value=5e-107) | Symbols: BPC4, BBR, ATBPC4 | basic pentacysteine 4 | chr2:9101515-9102489 REVERSE LENGTH=296;; (*ITAG) Solyc01g110470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88934016-88935469 transcript_region:SL2.40ch01:88934016..88935469+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00049346g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|94 NbS00056495g0003.1 protein AED:0.30 eAED:0.30 QI:0|1|0.6|1|1|1|5|0|308; (*GB) gi|224082730|ref|XP_002306816.1| (e_value=5e-104) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX99|OSB1_ARATH (e_value=7e-27) Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1;; (*TAIR) AT1G47720.1 (e_value=5e-28) | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261;; (*ITAG) Solyc09g065840.2.1 (e_value=3e-170) genomic_reference:SL2.40ch09 gene_region:59709509-59713431 transcript_region:SL2.40ch09:59709509..59713431+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding protein (AHRD V1 **** D7KGI0_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003697 NbS00001692g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.71|1|1|7|0|298; (*GB) gi|359490986|ref|XP_002277437.2| (e_value=4e-112) PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=2e-77) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=4e-100) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=2e-124) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00001692g0002.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|1|1|6|0|158; (*GB) gi|224135445|ref|XP_002322075.1| (e_value=2e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=1e-36) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=2e-41) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=3e-49) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00001692g0009.1 protein AED:0.37 eAED:0.82 QI:10|0|0.5|1|1|1|2|0|91; (*GB) gi|225446819|ref|XP_002279329.1| (e_value=4e-23) PREDICTED: conserved oligomeric Golgi complex subunit 5 [Vitis vinifera];; (*TAIR) AT1G67930.1 (e_value=9e-24) | Symbols: | Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832;; (*ITAG) Solyc10g007720.2.1 (e_value=4e-26) genomic_reference:SL2.40ch10 gene_region:1967084-1974413 transcript_region:SL2.40ch10:1967084..1974413- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 5 (AHRD V1 ***- COG5_HUMAN); contains Interpro domain(s) IPR019465 Conserved oligomeric Golgi complex, subunit 5 "; GO:0005515 NbS00001692g0004.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|77 NbS00059244g0002.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|1|1|3|202|207; (*GB) gi|224123014|ref|XP_002330420.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AS9|CNGC4_ARATH (e_value=1e-78) Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2;; (*TAIR) AT5G54250.3 (e_value=7e-80) | Symbols: CNGC4 | cyclic nucleotide-gated cation channel 4 | chr5:22025684-22029971 REVERSE LENGTH=689;; (*ITAG) Solyc12g005400.1.1 (e_value=6e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:236128-242060 transcript_region:SL2.40ch12:236128..242060- functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00023768g0006.1 protein AED:0.03 eAED:0.03 QI:89|1|1|1|0.5|1|3|429|260; (*GB) gi|224118424|ref|XP_002317815.1| (e_value=3e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69NG5|6PGL4_ORYSJ (e_value=8e-108) Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2;; (*TAIR) AT5G24400.1 (e_value=7e-106) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc06g053200.2.1 (e_value=1e-166) genomic_reference:SL2.40ch06 gene_region:32435446-32437176 transcript_region:SL2.40ch06:32435446..32437176- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** B6UAK0_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00023768g0010.1 protein AED:0.12 eAED:0.12 QI:468|0.33|0.5|0.5|1|1|4|74|90 NbS00017880g0004.1 protein AED:0.30 eAED:0.30 QI:244|0.92|0.86|1|0.85|0.8|15|480|325; (*GB) gi|225450865|ref|XP_002284178.1| (e_value=2e-150) PREDICTED: cyclin-H1-1 [Vitis vinifera];; (*SWP) sp|Q8W5S1|CCH11_ARATH (e_value=2e-129) Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1;; (*TAIR) AT5G27620.1 (e_value=1e-130) | Symbols: CYCH;1 | cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336;; (*ITAG) Solyc04g072880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57425743-57431154 transcript_region:SL2.40ch04:57425743..57431154+ go_terms:GO:0008353 functional_description:"RNA polymerase II holoenzyme cyclin-like subunit (AHRD V1 **** SSN8_NEUCR); contains Interpro domain(s) IPR015432 Cyclin H "; GO:0008353 NbS00022489g0005.1 protein AED:0.03 eAED:0.03 QI:237|0.8|1|1|0.6|0.66|6|240|311; (*GB) gi|224059112|ref|XP_002299721.1| (e_value=6e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S3D1|BH068_ARATH (e_value=4e-42) Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2;; (*TAIR) AT4G29100.1 (e_value=3e-43) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341140-14344575 FORWARD LENGTH=407;; (*ITAG) Solyc06g066580.2.1 (e_value=2e-117) genomic_reference:SL2.40ch06 gene_region:38215482-38219766 transcript_region:SL2.40ch06:38215482..38219766+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00022489g0008.1 protein AED:0.39 eAED:0.39 QI:0|0.71|0.75|1|0.85|0.87|8|269|327; (*GB) gi|225442563|ref|XP_002279072.1| (e_value=5e-171) PREDICTED: peroxisome biogenesis protein 2 [Vitis vinifera];; (*SWP) sp|Q9CA86|PEX2_ARATH (e_value=1e-151) Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1;; (*TAIR) AT1G79810.1 (e_value=8e-153) | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein | chr1:30019944-30022156 FORWARD LENGTH=333;; (*ITAG) Solyc06g066570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38205217-38211891 transcript_region:SL2.40ch06:38205217..38211891+ go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 2 (AHRD V1 *-*- A8NXV9_COPC7); contains Interpro domain(s) IPR006845 Pex, N-terminal "; GO:0005515 NbS00033354g0002.1 protein AED:0.22 eAED:0.22 QI:43|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc05g046240.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:57572308-57572715 transcript_region:SL2.40ch05:57572308..57572715+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013692g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.92|0.86|15|410|654; (*GB) gi|359475997|ref|XP_002280681.2| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8RWG1|Y4139_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1;; (*TAIR) AT4G31390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15233126-15236764 FORWARD LENGTH=682;; (*ITAG) Solyc08g074560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55830317-55845022 transcript_region:SL2.40ch08:55830317..55845022- go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_CHICK); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00015082g0003.1 protein AED:0.05 eAED:0.05 QI:229|1|1|1|1|1|3|194|611; (*GB) gi|255586158|ref|XP_002533739.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00016607g0005.1 protein AED:0.20 eAED:0.20 QI:214|1|1|1|0.5|0.33|3|391|147; (*GB) gi|225463002|ref|XP_002264271.1| (e_value=7e-63) PREDICTED: uncharacterized protein LOC100256785 [Vitis vinifera];; (*TAIR) AT3G18760.1 (e_value=6e-54) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:6457930-6459558 REVERSE LENGTH=139;; (*ITAG) Solyc05g054990.2.1 (e_value=1e-75) genomic_reference:SL2.40ch05 gene_region:63916788-63918207 transcript_region:SL2.40ch05:63916788..63918207- go_terms:GO:0005840 functional_description:"Genomic DNA chromosome 3 P1 clone MVE11 (AHRD V1 **-- Q9LSA1_ARATH); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00050280g0004.1 protein AED:0.27 eAED:0.28 QI:0|1|0.33|1|1|1|3|0|817; (*GB) gi|225434921|ref|XP_002280853.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100253495 [Vitis vinifera];; (*SWP) sp|P37707|B2_DAUCA (e_value=2e-15) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G32910.1 (e_value=8e-36) | Symbols: | DCD (Development and Cell Death) domain protein | chr2:13959685-13961989 FORWARD LENGTH=691;; (*ITAG) Solyc06g005570.2.1 (e_value=5e-147) genomic_reference:SL2.40ch06 gene_region:608436-615962 transcript_region:SL2.40ch06:608436..615962- functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00061229g0004.1 protein AED:0.02 eAED:0.02 QI:140|0.8|0.83|1|1|1|6|209|440; (*GB) gi|255568665|ref|XP_002525305.1| (e_value=2e-92) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q6X5Y6|WRI1_ARATH (e_value=1e-84) Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1;; (*TAIR) AT3G54320.1 (e_value=1e-85) | Symbols: WRI1, WRI, ASML1, ATWRI1 | Integrase-type DNA-binding superfamily protein | chr3:20114809-20118599 FORWARD LENGTH=438;; (*ITAG) Solyc01g096860.1.1 (e_value=1e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79614838-79618588 transcript_region:SL2.40ch01:79614838..79618588- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00022345g0023.1 protein AED:0.19 eAED:0.19 QI:0|0.2|0|1|0.2|0|6|0|361; (*GB) gi|17065916|emb|CAC80883.1| (e_value=1e-144) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O23976|C76B1_HELTU (e_value=3e-94) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=2e-87) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g065220.2.1 (e_value=4e-170) genomic_reference:SL2.40ch02 gene_region:30965998-30968282 transcript_region:SL2.40ch02:30965998..30968282- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00022345g0020.1 protein AED:0.34 eAED:0.36 QI:0|0.84|0.92|1|0.92|0.92|14|923|373; (*GB) gi|255569810|ref|XP_002525869.1| (e_value=4e-175) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q91W34|CP058_MOUSE (e_value=5e-37) UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G49820.1 (e_value=4e-164) | Symbols: RUS6 | Protein of unknown function, DUF647 | chr5:20246753-20249432 REVERSE LENGTH=497;; (*ITAG) Solyc10g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2665397-2673702 transcript_region:SL2.40ch10:2665397..2673702- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C1HAJ3_PARBA); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00022345g0006.1 protein AED:0.16 eAED:0.16 QI:235|0.33|0.5|1|1|1|4|1104|213; (*GB) gi|224120010|ref|XP_002331115.1| (e_value=3e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=2e-88) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=2e-89) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g103030.2.1 (e_value=9e-97) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00022345g0026.1 protein AED:0.29 eAED:0.35 QI:6|0.66|0.53|0.92|0.91|0.92|13|0|546; (*GB) gi|297739512|emb|CBI29694.3| (e_value=6e-159) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0S733|REN3A_DANRE (e_value=2e-21) Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2;; (*TAIR) AT1G33980.1 (e_value=1e-90) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=482;; (*ITAG) Solyc10g044450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21887500-21902534 transcript_region:SL2.40ch10:21887500..21902534+ go_terms:GO:0000166 functional_description:"Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3 "; GO:0000166 NbS00022345g0004.1 protein AED:0.50 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|220; (*ITAG) Solyc07g025280.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:27042065-27042775 transcript_region:SL2.40ch07:27042065..27042775- functional_description:"Zinc knuckle family protein (AHRD V1 *-*- Q7XFZ6_ORYSJ)"; NbS00011009g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|359473010|ref|XP_003631229.1| (e_value=1e-111) PREDICTED: uncharacterized protein LOC100262757 [Vitis vinifera];; (*TAIR) AT3G25640.1 (e_value=6e-80) | Symbols: | Protein of unknown function, DUF617 | chr3:9333775-9334578 FORWARD LENGTH=267;; (*ITAG) Solyc05g010010.1.1 (e_value=8e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4215012-4215788 transcript_region:SL2.40ch05:4215012..4215788- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00011009g0007.1 protein AED:0.26 eAED:0.26 QI:52|1|1|1|1|1|2|163|155; (*GB) gi|225423839|ref|XP_002278396.1| (e_value=2e-67) PREDICTED: nudix hydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9CA40|NUDT1_ARATH (e_value=2e-60) Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1;; (*TAIR) AT1G68760.1 (e_value=1e-61) | Symbols: ATNUDT1, ATNUDX1, NUDX1 | nudix hydrolase 1 | chr1:25829090-25829607 FORWARD LENGTH=147;; (*ITAG) Solyc00g128870.2.1 (e_value=4e-90) genomic_reference:SL2.40ch00 gene_region:16727160-16728659 transcript_region:SL2.40ch00:16727160..16728659+ go_terms:GO:0016787 functional_description:"Nudix hydrolase 1 (AHRD V1 ***- A6ANR4_VIBHA); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00025494g0003.1 protein AED:0.09 eAED:0.10 QI:47|0.25|0.4|1|0|0|5|0|262; (*GB) gi|297810411|ref|XP_002873089.1| (e_value=7e-24) hypothetical protein ARALYDRAFT_908205 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G03380.1 (e_value=1e-21) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:832400-834301 REVERSE LENGTH=392;; (*ITAG) Solyc10g086280.1.1 (e_value=2e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64482821-64484140 transcript_region:SL2.40ch10:64482821..64484140- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q10RN8_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00025494g0108.1 protein AED:0.26 eAED:0.26 QI:48|1|1|1|0.66|0.85|7|428|301 NbS00046481g0008.1 protein AED:0.10 eAED:0.10 QI:9|1|0.88|1|1|1|9|453|893; (*GB) gi|239819394|gb|ACS28251.1| (e_value=0.0) cell division control protein [Nicotiana glutinosa];; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT3G53230.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00046481g0004.1 protein AED:0.10 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|91; (*ITAG) Solyc11g069730.1.1 (e_value=1e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51419924-51420250 transcript_region:SL2.40ch11:51419924..51420250- functional_description:"Unknown Protein (AHRD V1)"; NbS00046481g0009.1 protein AED:0.28 eAED:0.34 QI:1|0.72|0.66|1|0.63|0.75|12|0|755; (*GB) gi|225436522|ref|XP_002273792.1| (e_value=0.0) PREDICTED: ABC transporter G family member 3 [Vitis vinifera];; (*SWP) sp|Q9ZUU9|AB3G_ARATH (e_value=0.0) ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2;; (*TAIR) AT2G28070.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730;; (*ITAG) Solyc11g069710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51394342-51402692 transcript_region:SL2.40ch11:51394342..51402692- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 3 (AHRD V1 ***- AB3G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00047254g0004.1 protein AED:0.02 eAED:0.02 QI:2|0.8|0.66|1|1|0.83|6|0|459; (*GB) gi|365222858|gb|AEW69781.1| (e_value=0.0) Hop-interacting protein THI006 [Solanum lycopersicum];; (*SWP) sp|Q9LDK9|APBLA_ARATH (e_value=0.0) Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1;; (*TAIR) AT5G11490.1 (e_value=0.0) | Symbols: | adaptin family protein | chr5:3671964-3676144 FORWARD LENGTH=841;; (*ITAG) Solyc08g068210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54522106-54537913 transcript_region:SL2.40ch08:54522106..54537913+ go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit "; GO:0030276 NbS00009733g0002.1 protein AED:0.03 eAED:0.03 QI:690|0.66|0.75|1|0.33|0.25|4|693|205; (*GB) gi|255575815|ref|XP_002528806.1| (e_value=2e-123) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q0E3X4|RH35A_ORYSJ (e_value=6e-118) DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2;; (*TAIR) AT5G51280.1 (e_value=1e-115) | Symbols: | DEAD-box protein abstrakt, putative | chr5:20841456-20843645 FORWARD LENGTH=591;; (*ITAG) Solyc03g117440.2.1 (e_value=1e-128) genomic_reference:SL2.40ch03 gene_region:60661188-60664340 transcript_region:SL2.40ch03:60661188..60664340+ go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00009733g0019.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|159; (*GB) gi|356556072|ref|XP_003546351.1| (e_value=1e-61) PREDICTED: major allergen Pru ar 1-like [Glycine max];; (*SWP) sp|O50001|PRU1_PRUAR (e_value=1e-53) Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1;; (*ITAG) Solyc03g117460.1.1 (e_value=5e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60667287-60667842 transcript_region:SL2.40ch03:60667287..60667842+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q43550_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00009733g0021.1 protein AED:0.22 eAED:0.27 QI:181|0.9|0.90|1|0.7|0.72|11|167|460; (*GB) gi|359482400|ref|XP_002268800.2| (e_value=0.0) PREDICTED: COBW domain-containing protein 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8IUF1|CBWD2_HUMAN (e_value=1e-52) COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1;; (*TAIR) AT1G80480.1 (e_value=0.0) | Symbols: PTAC17 | plastid transcriptionally active 17 | chr1:30258272-30260570 REVERSE LENGTH=444;; (*ITAG) Solyc03g117430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60652978-60660774 transcript_region:SL2.40ch03:60652978..60660774+ go_terms:GO:0005515,GO:0003824 functional_description:"Cobalamin synthesis protein P (AHRD V1 ***- D3M8Z8_9ACTO); contains Interpro domain(s) IPR003495 Cobalamin (vitamin B12) biosynthesis CobW-like "; GO:0005515,GO:0003824 NbS00009733g0024.1 protein AED:0.22 eAED:0.22 QI:0|0.87|0.77|0.88|1|1|9|0|783; (*GB) gi|457744|emb|CAA54869.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P31414|AVP1_ARATH (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc03g117480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60677249-60682108 transcript_region:SL2.40ch03:60677249..60682108- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (AHRD V1 **** C7HW54_9FIRM); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00009733g0006.1 protein AED:0.56 eAED:0.69 QI:0|0|0|0.5|1|1|4|0|82; (*GB) gi|225463597|ref|XP_002271539.1| (e_value=8e-33) PREDICTED: calcineurin subunit B isoform 1 [Vitis vinifera];; (*TAIR) AT3G18430.2 (e_value=6e-33) | Symbols: | Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175;; (*ITAG) Solyc03g117470.2.1 (e_value=8e-38) genomic_reference:SL2.40ch03 gene_region:60668427-60673467 transcript_region:SL2.40ch03:60668427..60673467- go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 *-*- B6U4N5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011617g0006.1 protein AED:0.05 eAED:0.05 QI:208|0.83|0.85|1|0.83|0.71|7|602|561; (*GB) gi|224055697|ref|XP_002298608.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P20735|GGT1_PIG (e_value=3e-100) Gamma-glutamyltranspeptidase 1 OS=Sus scrofa GN=GGT1 PE=2 SV=1;; (*TAIR) AT4G39640.2 (e_value=0.0) | Symbols: GGT1 | gamma-glutamyl transpeptidase 1 | chr4:18400608-18402861 FORWARD LENGTH=572;; (*ITAG) Solyc05g051780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61304042-61307642 transcript_region:SL2.40ch05:61304042..61307642- go_terms:GO:0016756 functional_description:"Gamma-glutamyltransferase-like protein (AHRD V1 **** Q9M0G0_ARATH); contains Interpro domain(s) IPR000101 Gamma-glutamyltranspeptidase "; GO:0016756 NbS00001374g0009.1 protein AED:0.10 eAED:0.10 QI:399|1|0.93|1|0.8|0.75|16|0|1019; (*GB) gi|359492622|ref|XP_002282350.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267859 [Vitis vinifera];; (*TAIR) AT4G11800.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:7093666-7098519 REVERSE LENGTH=1013;; (*ITAG) Solyc04g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61395376-61403327 transcript_region:SL2.40ch04:61395376..61403327- go_terms:GO:0004722 functional_description:"Calcineurin-like phosphoesterase family protein (AHRD V1 *-*- A9G786_SORC5); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00001374g0005.1 protein AED:0.20 eAED:0.28 QI:0|0|0|1|1|1|3|0|299; (*GB) gi|255538078|ref|XP_002510104.1| (e_value=1e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27760.3 (e_value=2e-40) | Symbols: SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family | chr1:9668895-9671322 FORWARD LENGTH=441;; (*ITAG) Solyc01g106150.1.1 (e_value=4e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85858825-85859985 transcript_region:SL2.40ch01:85858825..85859985- go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00001374g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|856|337; (*GB) gi|350537003|ref|NP_001234531.1| (e_value=2e-117) heme oxygenase 2 [Solanum lycopersicum];; (*SWP) sp|O48722|HMOX2_ARATH (e_value=1e-90) Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=HO2 PE=1 SV=2;; (*TAIR) AT2G26550.2 (e_value=9e-92) | Symbols: HO2 | heme oxygenase 2 | chr2:11291584-11293426 REVERSE LENGTH=299;; (*ITAG) Solyc04g079290.2.1 (e_value=3e-120) genomic_reference:SL2.40ch04 gene_region:61391519-61394711 transcript_region:SL2.40ch04:61391519..61394711+ go_terms:GO:0020037 functional_description:"Heme oxygenase 2 (AHRD V1 **** Q94FW6_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant "; GO:0020037 NbS00001374g0010.1 protein AED:0.21 eAED:0.31 QI:0|0|0|1|0|0|3|0|176; (*GB) gi|206812328|gb|ACI22425.1| (e_value=5e-66) pericarp peroxidase 3 [Litchi chinensis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=9e-53) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=7e-54) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc02g062510.2.1 (e_value=4e-68) genomic_reference:SL2.40ch02 gene_region:28779682-28781973 transcript_region:SL2.40ch02:28779682..28781973- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00031070g0015.1 protein AED:0.25 eAED:0.26 QI:0|0.77|0.9|1|0.77|0.9|10|454|401; (*GB) gi|58760268|gb|AAW82048.1| (e_value=0.0) SGT1 [Nicotiana benthamiana];; (*SWP) sp|Q0JL44|SGT1_ORYSJ (e_value=2e-133) Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1;; (*TAIR) AT4G11260.1 (e_value=2e-130) | Symbols: ATSGT1B, ETA3, RPR1, EDM1, SGT1B | phosphatase-related | chr4:6851515-6853719 REVERSE LENGTH=358;; (*ITAG) Solyc03g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2200919-2205536 transcript_region:SL2.40ch03:2200919..2205536+ go_terms:GO:0005515 functional_description:"SGT1 (AHRD V1 **-- Q2HPC2_SOLTU); contains Interpro domain(s) IPR007699 SGS "; GO:0005515 NbS00031070g0002.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|1|1|2|0|174; (*GB) gi|255545146|ref|XP_002513634.1| (e_value=8e-96) NADH dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9FLX7|NDUA5_ARATH (e_value=2e-89) Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1;; (*TAIR) AT5G52840.1 (e_value=1e-90) | Symbols: | NADH-ubiquinone oxidoreductase-related | chr5:21413718-21414794 FORWARD LENGTH=169;; (*ITAG) Solyc03g007660.2.1 (e_value=6e-123) genomic_reference:SL2.40ch03 gene_region:2190944-2196447 transcript_region:SL2.40ch03:2190944..2196447+ go_terms:GO:0005743 functional_description:"NADH dehydrogenase (AHRD V1 ***- D3BQF3_POLPA); contains Interpro domain(s) IPR006806 ETC complex I subunit "; GO:0005743 NbS00043426g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|558; (*GB) gi|37223173|gb|AAQ90182.1| (e_value=0.0) ntp101 [Nicotiana tabacum];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55560.1 (e_value=0.0) | Symbols: sks14 | SKU5 similar 14 | chr1:20754474-20756527 REVERSE LENGTH=549;; (*ITAG) Solyc01g005510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:346845-349013 transcript_region:SL2.40ch01:346845..349013- go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0055114 NbS00032335g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.6|1|1|1|5|0|366; (*GB) gi|356553583|ref|XP_003545134.1| (e_value=2e-131) PREDICTED: uncharacterized protein LOC100799085 [Glycine max];; (*TAIR) AT2G30900.1 (e_value=6e-127) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055730.2.1 (e_value=7e-160) genomic_reference:SL2.40ch07 gene_region:60985840-60988132 transcript_region:SL2.40ch07:60985840..60988132+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00032335g0008.1 protein AED:0.05 eAED:0.05 QI:215|1|1|1|1|1|2|530|431; (*GB) gi|225446710|ref|XP_002278037.1| (e_value=1e-117) PREDICTED: heat stress transcription factor A-4b [Vitis vinifera];; (*SWP) sp|Q94J16|HFA4B_ORYSJ (e_value=8e-79) Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1;; (*TAIR) AT4G18880.1 (e_value=2e-66) | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription factor A4A | chr4:10347769-10349051 REVERSE LENGTH=401;; (*ITAG) Solyc07g055710.2.1 (e_value=1e-176) genomic_reference:SL2.40ch07 gene_region:60972388-60973952 transcript_region:SL2.40ch07:60972388..60973952- go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00026725g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|297848524|ref|XP_002892143.1| (e_value=6e-34) glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=1e-33) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=1e-34) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc04g011880.1.1 (e_value=8e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4280042-4280350 transcript_region:SL2.40ch04:4280042..4280350- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9IBJ4_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00026725g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|418|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=9e-43) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=6e-41) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=4e-42) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011810.1.1 (e_value=3e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4243506-4243814 transcript_region:SL2.40ch04:4243506..4243814- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00000018g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.6|0.8|0.5|0.4|5|0|318; (*GB) gi|224063541|ref|XP_002301195.1| (e_value=3e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=5e-70) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=5e-104) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079250.2.1 (e_value=1e-95) genomic_reference:SL2.40ch04 gene_region:61361989-61363939 transcript_region:SL2.40ch04:61361989..61363939- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00000018g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|72 NbS00044222g0007.1 protein AED:0.20 eAED:0.20 QI:1972|0.73|0.68|0.87|0.73|0.62|16|0|619; (*GB) gi|225463033|ref|XP_002267199.1| (e_value=0.0) PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Vitis vinifera];; (*SWP) sp|A4FUD3|U5S1_BOVIN (e_value=0.0) 116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1;; (*TAIR) AT1G06220.1 (e_value=0.0) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987;; (*ITAG) Solyc07g007210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1950540-1956871 transcript_region:SL2.40ch07:1950540..1956871+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor like protein (AHRD V1 **** Q9LNC5_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515,GO:0003746 NbS00044222g0010.1 protein AED:0.27 eAED:0.27 QI:252|0.66|0.5|1|0.66|0.5|4|0|337; (*GB) gi|21693562|gb|AAM75346.1|AF520810_1 (e_value=1e-175) DNA-binding protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|Q69QZ0|P2C27_ORYSJ (e_value=2e-116) Probable protein phosphatase 2C 27 OS=Oryza sativa subsp. japonica GN=Os02g0799000 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=2e-87) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc07g007220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1957198-1960831 transcript_region:SL2.40ch07:1957198..1960831- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00001705g0004.1 protein AED:0.05 eAED:0.22 QI:92|1|0.5|1|0|0|2|0|139; (*GB) gi|224102819|ref|XP_002312813.1| (e_value=2e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT3G44510.2 (e_value=6e-40) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009480.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:3702854-3706348 transcript_region:SL2.40ch01:3702854..3706348- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00001705g0003.1 protein AED:0.31 eAED:0.31 QI:334|0.75|0.8|1|0.75|1|5|310|379; (*GB) gi|255565603|ref|XP_002523791.1| (e_value=6e-154) catalytic, putative [Ricinus communis];; (*TAIR) AT5G22460.2 (e_value=8e-127) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:7443659-7445269 REVERSE LENGTH=340;; (*ITAG) Solyc11g067260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50079836-50084792 transcript_region:SL2.40ch11:50079836..50084792+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00019803g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|0.75|1|1|4|0|416; (*GB) gi|317106607|dbj|BAJ53114.1| (e_value=0.0) JHL07K02.4 [Jatropha curcas];; (*SWP) sp|Q940Q8|IX10L_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1;; (*TAIR) AT5G61840.1 (e_value=0.0) | Symbols: GUT1 | Exostosin family protein | chr5:24839365-24841703 REVERSE LENGTH=415;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00019803g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|1|1|7|0|195; (*GB) gi|356516466|ref|XP_003526915.1| (e_value=1e-116) PREDICTED: chromophore lyase CpcT/CpeT 3-like [Glycine max];; (*SWP) sp|B0JGA0|CPXT3_MICAN (e_value=7e-18) Chromophore lyase CpcT/CpeT 3 OS=Microcystis aeruginosa (strain NIES-843) GN=cpcT3 PE=3 SV=1;; (*TAIR) AT5G51020.1 (e_value=4e-103) | Symbols: CRL | crumpled leaf | chr5:20745560-20747165 REVERSE LENGTH=269;; (*ITAG) Solyc06g068760.2.1 (e_value=8e-137) genomic_reference:SL2.40ch06 gene_region:39005202-39008697 transcript_region:SL2.40ch06:39005202..39008697+ functional_description:"CRUMPLED LEAF (AHRD V1 ***- Q9FI46_ARATH); contains Interpro domain(s) IPR010404 Protein of unknown function DUF1001 "; NbS00031411g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.84|0.94|0.77|0.84|19|211|691; (*GB) gi|34481801|emb|CAC87836.1| (e_value=0.0) cullin 1B [Nicotiana tabacum];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc06g084520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45890280-45896870 transcript_region:SL2.40ch06:45890280..45896870- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase Cullin 4 (AHRD V1 **** D8RM97_SELML); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00031411g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.4|1|1|5|0|179 NbS00031411g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.90|0.75|1|0.81|0.75|12|376|1662; (*GB) gi|359479822|ref|XP_002269412.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254466 [Vitis vinifera];; (*TAIR) AT3G62900.1 (e_value=2e-82) | Symbols: | CW-type Zinc Finger | chr3:23248868-23254810 REVERSE LENGTH=1465;; (*ITAG) Solyc09g074670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61989394-61999166 transcript_region:SL2.40ch09:61989394..61999166+ go_terms:GO:0008270 functional_description:"CW-type Zinc Finger family protein expressed (AHRD V1 *-*- Q10LI9_ORYSJ); contains Interpro domain(s) IPR011124 Zinc finger, CW-type "; GO:0008270 NbS00031411g0008.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|0|0|2|0|136; (*GB) gi|34481801|emb|CAC87836.1| (e_value=5e-32) cullin 1B [Nicotiana tabacum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=3e-25) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=2e-26) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc09g074680.2.1 (e_value=3e-31) genomic_reference:SL2.40ch09 gene_region:62001464-62009086 transcript_region:SL2.40ch09:62001464..62009086- go_terms:GO:0030332,GO:0004842 functional_description:"Cullin 1B (AHRD V1 ***- Q711G7_TOBAC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332,GO:0004842 NbC25170424g0001.1 protein AED:0.15 eAED:0.15 QI:70|-1|0|1|-1|0|1|0|42; (*ITAG) Solyc01g094660.2.1 (e_value=9e-21) genomic_reference:SL2.40ch01 gene_region:77865068-77873889 transcript_region:SL2.40ch01:77865068..77873889+ go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00010252g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|0.5|0.33|3|417|992; (*GB) gi|225443594|ref|XP_002278698.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT1G28440.1 (e_value=0.0) | Symbols: HSL1 | HAESA-like 1 | chr1:9996914-10000171 FORWARD LENGTH=996;; (*ITAG) Solyc02g077630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37086211-37090305 transcript_region:SL2.40ch02:37086211..37090305- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00025727g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.16|0.83|0.6|0.66|6|0|300; (*GB) gi|350537875|ref|NP_001233803.1| (e_value=0.0) pto-interacting protein 1 [Solanum lycopersicum];; (*SWP) sp|Q41328|PTI1_SOLLC (e_value=0.0) Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2;; (*TAIR) AT3G17410.1 (e_value=8e-164) | Symbols: | Protein kinase superfamily protein | chr3:5956601-5958882 FORWARD LENGTH=364;; (*ITAG) Solyc12g098980.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64649552-64653076 transcript_region:SL2.40ch12:64649552..64653076- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0006468 NbS00025727g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.85|1|1|1|7|0|499; (*GB) gi|225432165|ref|XP_002267270.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g18500 [Vitis vinifera];; (*SWP) sp|Q9SJG2|Y2296_ARATH (e_value=0.0) Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1;; (*TAIR) AT1G56720.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:21263630-21265559 REVERSE LENGTH=492;; (*ITAG) Solyc12g098960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64645950-64648526 transcript_region:SL2.40ch12:64645950..64648526+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023299g0005.1 protein AED:0.03 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|908; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=9e-121) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-104) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-48) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007170.2.1 (e_value=5e-123) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00005701g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|225434889|ref|XP_002280733.1| (e_value=3e-150) PREDICTED: uncharacterized protein LOC100255385 [Vitis vinifera];; (*TAIR) AT5G59500.1 (e_value=6e-138) | Symbols: | protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases | chr5:23986024-23987214 FORWARD LENGTH=396;; (*ITAG) Solyc07g007700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2356283-2357485 transcript_region:SL2.40ch07:2356283..2357485+ functional_description:"Isoprenylcysteine carboxyl methyltransferase (AHRD V1 *-*- B3QS90_CHLT3)"; NbS00000342g0010.1 protein AED:0.01 eAED:0.03 QI:0|1|0|1|0|0|2|0|326; (*GB) gi|224121348|ref|XP_002318560.1| (e_value=5e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74070.1 (e_value=3e-105) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:27851749-27852861 REVERSE LENGTH=317;; (*ITAG) Solyc03g119860.2.1 (e_value=2e-178) genomic_reference:SL2.40ch03 gene_region:62462727-62464217 transcript_region:SL2.40ch03:62462727..62464217+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- D8U4U4_VOLCA); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00000342g0013.1 protein AED:0.10 eAED:0.10 QI:174|0.85|0.62|1|0.85|0.75|8|1634|685; (*GB) gi|255541860|ref|XP_002511994.1| (e_value=8e-144) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G48950.1 (e_value=9e-133) | Symbols: | C3HC zinc finger-like | chr1:18107063-18110108 FORWARD LENGTH=594;; (*ITAG) Solyc03g119870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62464159-62469704 transcript_region:SL2.40ch03:62464159..62469704- go_terms:GO:0005634 functional_description:"Zinc finger C3HC-type containing 1 (AHRD V1 *--- B0S6Y2_DANRE); contains Interpro domain(s) IPR012935 Zinc finger, C3HC-like "; GO:0005634 NbS00000342g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.66|1|1|1|1|4|728|196; (*GB) gi|356516902|ref|XP_003527131.1| (e_value=6e-68) PREDICTED: uncharacterized protein LOC100778166 [Glycine max];; (*TAIR) AT1G48960.1 (e_value=3e-64) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:18112552-18113550 FORWARD LENGTH=219;; (*ITAG) Solyc03g119840.2.1 (e_value=1e-105) genomic_reference:SL2.40ch03 gene_region:62451425-62454082 transcript_region:SL2.40ch03:62451425..62454082- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KDY5_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00000342g0016.1 protein AED:0.17 eAED:0.17 QI:141|1|0.91|1|0.90|0.83|12|389|637; (*GB) gi|224099297|ref|XP_002311428.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q566L7|LS14B_XENTR (e_value=2e-24) Protein LSM14 homolog B OS=Xenopus tropicalis GN=lsm14b PE=2 SV=1;; (*TAIR) AT1G26110.2 (e_value=3e-35) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc06g069280.2.1 (e_value=4e-158) genomic_reference:SL2.40ch06 gene_region:39428427-39437309 transcript_region:SL2.40ch06:39428427..39437309- functional_description:"Protein LSM14 homolog A (AHRD V1 *--- LS14A_PONAB); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00001171g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.33|0|0.33|3|0|126; (*GB) gi|224062025|ref|XP_002300717.1| (e_value=2e-56) SAUR family protein [Populus trichocarpa];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=4e-23) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=5e-57) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc04g081270.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62890273-62890599 transcript_region:SL2.40ch04:62890273..62890599- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00005275g0003.1 protein AED:0.18 eAED:0.18 QI:291|1|1|1|0.87|0.77|9|273|210; (*GB) gi|146335228|gb|ABQ23353.1| (e_value=1e-86) calcineurin B-like protein [Zea mays];; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=6e-84) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT1G64480.1 (e_value=2e-80) | Symbols: CBL8 | calcineurin B-like protein 8 | chr1:23948028-23949751 REVERSE LENGTH=214;; (*ITAG) Solyc06g051970.2.1 (e_value=4e-84) genomic_reference:SL2.40ch06 gene_region:32132164-32135700 transcript_region:SL2.40ch06:32132164..32135700- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00002535g0005.1 protein AED:0.02 eAED:0.02 QI:52|1|1|1|0.5|0.33|3|75|539; (*GB) gi|225461181|ref|XP_002280309.1| (e_value=0.0) PREDICTED: organic cation transporter protein-like [Vitis vinifera];; (*SWP) sp|Q9LHQ6|OCT4_ARATH (e_value=0.0) Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1;; (*TAIR) AT3G20660.1 (e_value=0.0) | Symbols: AtOCT4, 4-Oct | organic cation/carnitine transporter4 | chr3:7225271-7228510 REVERSE LENGTH=526;; (*ITAG) Solyc07g063920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63479200-63481729 transcript_region:SL2.40ch07:63479200..63481729+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 6 (AHRD V1 ***- B5X2P9_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00020892g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|2|294|160; (*GB) gi|388499366|gb|AFK37749.1| (e_value=2e-52) unknown [Lotus japonicus];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=1e-51) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=1e-52) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc01g099830.2.1 (e_value=8e-57) genomic_reference:SL2.40ch01 gene_region:81721206-81723201 transcript_region:SL2.40ch01:81721206..81723201+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00044931g0004.1 protein AED:0.13 eAED:0.13 QI:25|1|1|1|1|1|3|116|284; (*GB) gi|350535953|ref|NP_001234478.1| (e_value=5e-161) xyloglucan endotransglucosylase-hydrolase XTH9 precursor [Solanum lycopersicum];; (*SWP) sp|Q8LG58|XTH16_ARATH (e_value=7e-122) Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2;; (*TAIR) AT3G23730.1 (e_value=5e-123) | Symbols: XTH16 | xyloglucan endotransglucosylase/hydrolase 16 | chr3:8550222-8551248 FORWARD LENGTH=291;; (*ITAG) Solyc07g055990.2.1 (e_value=2e-171) genomic_reference:SL2.40ch07 gene_region:61215070-61217037 transcript_region:SL2.40ch07:61215070..61217037+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 **** C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00044931g0006.1 protein AED:0.09 eAED:0.46 QI:58|1|0.5|1|0|0|2|231|65 NbS00044931g0005.1 protein AED:0.14 eAED:0.52 QI:0|0|0|1|0|0|3|0|92 NbS00046453g0009.1 protein AED:0.19 eAED:0.19 QI:203|1|0.8|1|0.75|0.4|5|0|161; (*GB) gi|94983056|gb|ABF50233.1| (e_value=2e-108) AGAMOUS, partial [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q43585|AG_TOBAC (e_value=9e-109) Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1;; (*TAIR) AT4G18960.1 (e_value=2e-81) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252;; (*ITAG) Solyc02g071730.2.1 (e_value=1e-105) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00019684g0014.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|521; (*GB) gi|255553783|ref|XP_002517932.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G28260.2 (e_value=4e-153) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 50 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14005048-14006762 FORWARD LENGTH=516;; (*ITAG) Solyc10g008420.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2540041-2542828 transcript_region:SL2.40ch10:2540041..2542828- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00019684g0010.1 protein AED:0.28 eAED:0.28 QI:61|0.5|0.66|1|0.5|0.66|3|230|203; (*GB) gi|225446341|ref|XP_002272256.1| (e_value=2e-53) PREDICTED: thioredoxin M-type, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9XGS0|TRXM_BRANA (e_value=2e-51) Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1;; (*TAIR) AT4G03520.1 (e_value=1e-48) | Symbols: ATHM2 | Thioredoxin superfamily protein | chr4:1562585-1564055 REVERSE LENGTH=186;; (*ITAG) Solyc10g008390.2.1 (e_value=3e-91) genomic_reference:SL2.40ch10 gene_region:2524682-2529183 transcript_region:SL2.40ch10:2524682..2529183+ go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00019684g0002.1 protein AED:0.29 eAED:0.29 QI:179|0|0.5|1|0|0.5|2|0|245; (*GB) gi|75291821|sp|Q6R567.1|RMA1_CAPAN (e_value=8e-88) RecName: Full=E3 ubiquitin-protein ligase RMA1H1; AltName: Full=Protein RING membrane-anchor 1 homolog 1;; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=2e-89) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G03510.2 (e_value=1e-41) | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | chr4:1557905-1558654 REVERSE LENGTH=249;; (*ITAG) Solyc07g054080.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59811811-59812539 transcript_region:SL2.40ch07:59811811..59812539+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6TI40_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00019684g0013.1 protein AED:0.47 eAED:0.61 QI:0|0|0|1|0|0|2|0|64 NbS00002720g0010.1 protein AED:0.14 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|455; (*GB) gi|302142966|emb|CBI20261.3| (e_value=3e-158) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LIL5|PP233_ARATH (e_value=6e-108) Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1;; (*TAIR) AT3G15200.1 (e_value=4e-109) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:5117489-5119060 REVERSE LENGTH=523;; (*ITAG) Solyc12g014000.1.1 (e_value=8e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4840081-4841547 transcript_region:SL2.40ch12:4840081..4841547+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L401_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002720g0011.1 protein AED:0.41 eAED:0.62 QI:0|0|0.5|1|0|0|2|310|69 NbS00002720g0004.1 protein AED:0.11 eAED:0.19 QI:0|0|0|1|1|1|2|0|562; (*GB) gi|224114581|ref|XP_002316801.1| (e_value=4e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15095.1 (e_value=2e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). | chr3:5081996-5084050 FORWARD LENGTH=684;; (*ITAG) Solyc07g062730.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62648976-62651117 transcript_region:SL2.40ch07:62648976..62651117+ functional_description:"Chloroplast protein HCF243 (AHRD V1 *-*- Q9LIM5_ARATH)"; NbS00002720g0009.1 protein AED:0.45 eAED:0.85 QI:0|0|0|1|0|0|2|0|109; (*ITAG) Solyc07g062870.2.1 (e_value=4e-23) genomic_reference:SL2.40ch07 gene_region:62729882-62733164 transcript_region:SL2.40ch07:62729882..62733164+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S20 (AHRD V1 *-*- RS20_THEEB); contains Interpro domain(s) IPR002583 Ribosomal protein S20 "; GO:0005840 NbS00002720g0116.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.5|1|1|1|4|256|1419 NbS00002720g0122.1 protein AED:0.36 eAED:0.36 QI:144|0.33|0.75|0.75|0.33|0.5|4|0|91 NbS00002720g0111.1 protein AED:0.34 eAED:0.67 QI:0|0|0|0.5|1|1|4|0|120 NbS00002720g0125.1 protein AED:0.02 eAED:0.18 QI:60|0|0|1|0|0.2|5|0|652 NbS00002720g0124.1 protein AED:0.19 eAED:0.19 QI:182|1|0.85|1|0.83|0.85|7|0|369 NbS00013975g0004.1 protein AED:0.02 eAED:0.02 QI:156|1|1|1|1|1|2|1158|388; (*GB) gi|147859636|emb|CAN83117.1| (e_value=2e-55) hypothetical protein VITISV_017709 [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=3e-32) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=2e-33) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc01g065740.2.1 (e_value=4e-103) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000311g0011.1 protein AED:0.11 eAED:0.11 QI:992|0.66|0.71|0.85|0.83|0.85|7|2|181; (*GB) gi|359489586|ref|XP_002264136.2| (e_value=2e-89) PREDICTED: uncharacterized protein LOC100255258 [Vitis vinifera];; (*TAIR) AT2G46560.1 (e_value=8e-84) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:19115570-19125856 REVERSE LENGTH=2513;; (*ITAG) Solyc01g096110.2.1 (e_value=3e-113) genomic_reference:SL2.40ch01 gene_region:78967477-78987548 transcript_region:SL2.40ch01:78967477..78987548- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 *--- A1CP90_ASPCL); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00000311g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|3|0|532; (*GB) gi|225470934|ref|XP_002265230.1| (e_value=3e-112) PREDICTED: uncharacterized protein LOC100260339 [Vitis vinifera];; (*TAIR) AT2G46550.1 (e_value=3e-43) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19112264-19113457 REVERSE LENGTH=397;; (*ITAG) Solyc01g096100.2.1 (e_value=1e-177) genomic_reference:SL2.40ch01 gene_region:78959267-78963672 transcript_region:SL2.40ch01:78959267..78963672- functional_description:"AT2G46550 protein (Fragment) (AHRD V1 ***- B9DHY8_ARATH)"; NbS00000311g0017.1 protein AED:0.31 eAED:0.31 QI:94|1|1|1|0.5|0.66|3|578|63; (*GB) gi|25992541|gb|AAN77150.1| (e_value=2e-32) fiber protein Fb11 [Gossypium barbadense];; (*TAIR) AT2G46540.1 (e_value=8e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110687-19111681 REVERSE LENGTH=65;; (*ITAG) Solyc01g096090.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:78955255-78958813 transcript_region:SL2.40ch01:78955255..78958813- functional_description:"Fiber protein Fb11 (AHRD V1 ***- Q8GT82_GOSBA)"; NbS00000311g0018.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|1|2|183|232; (*GB) gi|225470930|ref|XP_002264990.1| (e_value=5e-38) PREDICTED: uncharacterized protein At4g00950 [Vitis vinifera];; (*SWP) sp|Q9M160|Y4095_ARATH (e_value=6e-19) Uncharacterized protein At4g00950 OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1;; (*TAIR) AT4G00950.1 (e_value=5e-20) | Symbols: MEE47 | Protein of unknown function (DUF688) | chr4:405984-407087 REVERSE LENGTH=291;; (*ITAG) Solyc01g096080.2.1 (e_value=7e-104) genomic_reference:SL2.40ch01 gene_region:78952509-78954988 transcript_region:SL2.40ch01:78952509..78954988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017952g0007.1 protein AED:0.03 eAED:0.03 QI:183|1|1|1|1|1|2|617|253; (*GB) gi|296278600|gb|ADH04264.1| (e_value=4e-150) HB1 [Nicotiana benthamiana];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=2e-57) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.1 (e_value=2e-58) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=258;; (*ITAG) Solyc01g096320.2.1 (e_value=5e-98) genomic_reference:SL2.40ch01 gene_region:79151283-79152562 transcript_region:SL2.40ch01:79151283..79152562- go_terms:GO:0016563,GO:0005509 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- Q9XH73_PRUAR); contains Interpro domain(s) IPR001356 Homeobox "; GO:0016563,GO:0005509 NbS00017952g0009.1 protein AED:0.17 eAED:0.21 QI:19|0|0|1|0|0|2|0|171; (*GB) gi|296088983|emb|CBI38686.3| (e_value=7e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=5e-15) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=4e-16) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc01g096300.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:79143339-79147617 transcript_region:SL2.40ch01:79143339..79147617- functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00039863g0003.1 protein AED:0.32 eAED:0.39 QI:0|0.69|0.64|1|0.53|0.5|14|129|427; (*GB) gi|225470822|ref|XP_002265112.1| (e_value=0.0) PREDICTED: carboxypeptidase D [Vitis vinifera];; (*SWP) sp|Q9JHW1|CBPD_RAT (e_value=1e-71) Carboxypeptidase D OS=Rattus norvegicus GN=Cpd PE=2 SV=2;; (*TAIR) AT1G71696.2 (e_value=1e-169) | Symbols: SOL1 | carboxypeptidase D, putative | chr1:26966996-26970364 FORWARD LENGTH=491;; (*ITAG) Solyc04g072010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56665497-56679263 transcript_region:SL2.40ch04:56665497..56679263+ go_terms:GO:0004181 functional_description:"Carboxypeptidase D (AHRD V1 ***- Q5SVH8_MOUSE); contains Interpro domain(s) IPR000834 Peptidase M14, carboxypeptidase A "; GO:0004181 NbS00054253g0002.1 protein AED:0.24 eAED:0.62 QI:40|0|0.5|1|0|0|2|0|33 NbS00001088g0004.1 protein AED:0.40 eAED:0.50 QI:0|0|0|0.75|0.33|0.25|4|0|218 NbS00001088g0005.1 protein AED:0.36 eAED:0.45 QI:41|0|0|1|0|0|3|0|85 NbS00012815g0005.1 protein AED:0.10 eAED:0.10 QI:527|1|0.75|1|0.66|0.5|4|0|534; (*GB) gi|225465698|ref|XP_002273428.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263135 [Vitis vinifera];; (*SWP) sp|Q9SKC4|ARI10_ARATH (e_value=3e-14) Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1;; (*TAIR) AT4G19670.2 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr4:10699383-10701342 REVERSE LENGTH=532;; (*ITAG) Solyc02g069230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33753086-33758868 transcript_region:SL2.40ch02:33753086..33758868+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00012815g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|436; (*GB) gi|225465700|ref|XP_002273827.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252719 [Vitis vinifera];; (*TAIR) AT3G05320.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:1513558-1514895 REVERSE LENGTH=445;; (*ITAG) Solyc02g069240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33760563-33761873 transcript_region:SL2.40ch02:33760563..33761873- functional_description:"Protein-O-fucosyltransferase 1 (AHRD V1 ***- Q659R8_ORYSA)"; NbS00032623g0008.1 protein AED:0.24 eAED:0.31 QI:0|0|0|1|1|1|3|0|218; (*ITAG) Solyc02g005360.1.1 (e_value=1e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00032623g0010.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|1|0.8|5|0|229; (*GB) gi|60459387|gb|AAX20039.1| (e_value=8e-128) tyrosine specific protein phosphatase family protein [Capsicum annuum];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=2e-100) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT1G05000.1 (e_value=1e-101) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr1:1425660-1428393 FORWARD LENGTH=215;; (*ITAG) Solyc07g049560.2.1 (e_value=2e-132) genomic_reference:SL2.40ch07 gene_region:57175525-57179154 transcript_region:SL2.40ch07:57175525..57179154- go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00032623g0013.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|104; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-27) hypothetical protein [Nicotiana tabacum]; NbS00010260g0013.1 protein AED:0.22 eAED:0.22 QI:171|1|1|1|0.5|1|3|262|545; (*GB) gi|225452376|ref|XP_002275607.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100264681 [Vitis vinifera];; (*TAIR) AT5G14540.1 (e_value=7e-47) | Symbols: | Protein of unknown function (DUF1421) | chr5:4687333-4689624 REVERSE LENGTH=547;; (*ITAG) Solyc12g035240.1.1 (e_value=5e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23997387-24003235 transcript_region:SL2.40ch12:23997387..24003235+ functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 ***- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00010260g0015.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.75|0.33|0.5|4|0|240; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-37) hypothetical protein [Nicotiana tabacum]; NbS00032151g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|1|1|8|0|366; (*GB) gi|117622284|gb|ABK51386.1| (e_value=0.0) apyrase-like protein [Nicotiana tabacum];; (*SWP) sp|P52914|NTPA_PEA (e_value=4e-123) Nucleoside-triphosphatase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G04080.1 (e_value=4e-170) | Symbols: ATAPY1, APY1 | apyrase 1 | chr3:1068068-1070917 REVERSE LENGTH=471;; (*ITAG) Solyc08g016010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6476389-6481100 transcript_region:SL2.40ch08:6476389..6481100- go_terms:GO:0016887,GO:0004382 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 5 (AHRD V1 **-- A1L4C5_HUMAN); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016887,GO:0004382 NbS00032151g0006.1 protein AED:0.39 eAED:0.42 QI:99|0.8|0.83|1|1|1|6|0|218; (*GB) gi|388518237|gb|AFK47180.1| (e_value=5e-90) unknown [Lotus japonicus];; (*SWP) sp|B0JHV3|EFP_MICAN (e_value=2e-58) Elongation factor P OS=Microcystis aeruginosa (strain NIES-843) GN=efp PE=3 SV=1;; (*TAIR) AT3G08740.1 (e_value=4e-87) | Symbols: | elongation factor P (EF-P) family protein | chr3:2654788-2656154 REVERSE LENGTH=236;; (*ITAG) Solyc10g075020.1.1 (e_value=2e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58033470-58038696 transcript_region:SL2.40ch10:58033470..58038696- go_terms:GO:0006414,GO:0005737 functional_description:"Elongation factor P (AHRD V1 ***- B6UC94_MAIZE); contains Interpro domain(s) IPR011768 Translation elongation factor P "; GO:0006414,GO:0005737 NbS00000953g0007.1 protein AED:0.26 eAED:0.27 QI:250|0.66|0.85|1|0.66|0.85|7|137|189; (*GB) gi|384081614|ref|NP_001244911.1| (e_value=1e-115) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 [Solanum lycopersicum];; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=4e-107) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.1 (e_value=3e-108) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215;; (*ITAG) Solyc09g007830.2.1 (e_value=2e-118) genomic_reference:SL2.40ch09 gene_region:1356808-1361135 transcript_region:SL2.40ch09:1356808..1361135- go_terms:GO:0016831 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831 NbS00000576g0002.1 protein AED:0.07 eAED:0.07 QI:22|1|1|1|1|1|2|219|247; (*GB) gi|255537882|ref|XP_002510006.1| (e_value=8e-46) Transcription factor HBP-1b, putative [Ricinus communis];; (*SWP) sp|Q39237|TGA1_ARATH (e_value=1e-14) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT1G09950.1 (e_value=3e-40) | Symbols: RAS1 | RESPONSE TO ABA AND SALT 1 | chr1:3240849-3241541 REVERSE LENGTH=230;; (*ITAG) Solyc04g076970.2.1 (e_value=4e-127) genomic_reference:SL2.40ch04 gene_region:59517610-59518748 transcript_region:SL2.40ch04:59517610..59518748+ functional_description:"BZIP transcription factor (AHRD V1 ***- A7Y1S1_BRAJU)"; NbS00029577g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.69|1|0.83|0.84|13|0|966; (*GB) gi|171854677|dbj|BAG16528.1| (e_value=0.0) putative 26S proteasome subunit RPN2a [Capsicum chinense];; (*SWP) sp|Q3TXS7|PSMD1_MOUSE (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1;; (*TAIR) AT2G32730.1 (e_value=0.0) | Symbols: | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880189-13885464 FORWARD LENGTH=1004;; (*ITAG) Solyc09g091750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66318786-66327848 transcript_region:SL2.40ch09:66318786..66327848+ go_terms:GO:0032183,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- O48844_ARATH); contains Interpro domain(s) IPR016642 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "; GO:0032183,GO:0004175 NbS00029577g0006.1 protein AED:0.23 eAED:0.35 QI:0|0|0|1|0|0.33|3|0|171; (*GB) gi|224060387|ref|XP_002300174.1| (e_value=1e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56YJ8|FAMA_ARATH (e_value=1e-21) Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1;; (*TAIR) AT3G24140.1 (e_value=1e-22) | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414;; (*ITAG) Solyc09g091760.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66328970-66330468 transcript_region:SL2.40ch09:66328970..66330468+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MJZ9_9ASPA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00059072g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|208; (*GB) gi|225426236|ref|XP_002263697.1| (e_value=4e-62) PREDICTED: bidirectional sugar transporter SWEET4 [Vitis vinifera];; (*SWP) sp|Q8LBF7|SWET7_ARATH (e_value=3e-56) Bidirectional sugar transporter SWEET7 OS=Arabidopsis thaliana GN=SWEET7 PE=2 SV=1;; (*TAIR) AT4G10850.1 (e_value=2e-57) | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family protein | chr4:6675068-6676718 FORWARD LENGTH=258;; (*ITAG) Solyc08g082770.2.1 (e_value=1e-78) genomic_reference:SL2.40ch08 gene_region:62627026-62629694 transcript_region:SL2.40ch08:62627026..62629694- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00031741g0004.1 protein AED:0.21 eAED:0.21 QI:97|0.5|0.66|0.66|0|0.33|3|259|76 NbS00043176g0004.1 protein AED:0.07 eAED:0.10 QI:0|0.33|0.25|1|0|0|4|328|671; (*GB) gi|359495463|ref|XP_002270292.2| (e_value=0.0) PREDICTED: vacuolar protein 8-like [Vitis vinifera];; (*TAIR) AT1G61350.1 (e_value=8e-174) | Symbols: | ARM repeat superfamily protein | chr1:22634099-22635820 FORWARD LENGTH=573;; (*ITAG) Solyc02g079200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38393852-38395582 transcript_region:SL2.40ch02:38393852..38395582+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7KW19_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00003543g0005.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|2|0|977; (*GB) gi|225433874|ref|XP_002264936.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=0.0) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=0.0) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00013230g0003.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|0|0.5|2|0|200; (*GB) gi|224063389|ref|XP_002301124.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT5G65520.1 (e_value=9e-33) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26189876-26190496 REVERSE LENGTH=206;; (*ITAG) Solyc04g076470.1.1 (e_value=1e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:58931752-58932414 transcript_region:SL2.40ch04:58931752..58932414- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B8IUJ2_METNO); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00034132g0002.1 protein AED:0.25 eAED:0.32 QI:72|0|0|1|0|0|6|0|400; (*GB) gi|54397637|gb|AAV33689.1| (e_value=2e-63) Hcr9-OR2A [Solanum pimpinellifolium];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-22) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT4G13810.1 (e_value=1e-32) | Symbols: AtRLP47, RLP47 | receptor like protein 47 | chr4:8005062-8007287 REVERSE LENGTH=741;; (*ITAG) Solyc12g100030.1.1 (e_value=8e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65271557-65274358 transcript_region:SL2.40ch12:65271557..65274358+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00034132g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|3|0|184; (*GB) gi|6635236|dbj|BAA88636.1| (e_value=2e-52) elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum];; (*TAIR) AT2G25440.1 (e_value=2e-12) | Symbols: AtRLP20, RLP20 | receptor like protein 20 | chr2:10826735-10829402 FORWARD LENGTH=671;; (*ITAG) Solyc06g008270.2.1 (e_value=2e-52) genomic_reference:SL2.40ch06 gene_region:2139308-2142190 transcript_region:SL2.40ch06:2139308..2142190- go_terms:GO:0019903 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903 NbS00001756g0015.1 protein AED:0.25 eAED:0.26 QI:39|0.83|0.69|1|1|1|13|0|462; (*GB) gi|255539809|ref|XP_002510969.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8U4K7|PGK2_PYRFU (e_value=2e-14) 2-phosphoglycerate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pgk2 PE=3 SV=1;; (*TAIR) AT5G61450.1 (e_value=6e-175) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24710240-24712882 REVERSE LENGTH=447;; (*ITAG) Solyc03g093300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47917221-47929938 transcript_region:SL2.40ch03:47917221..47929938- functional_description:"2-phosphoglycerate kinase (AHRD V1 ***- C3SAC6_BRADI)"; NbS00001756g0014.1 protein AED:0.27 eAED:0.28 QI:0|0.66|0.6|1|0.88|0.8|10|0|348; (*GB) gi|224138464|ref|XP_002326609.1| (e_value=2e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=4e-172) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=3e-173) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbS00001756g0019.1 protein AED:0.23 eAED:0.23 QI:256|0.9|0.90|1|0.9|0.81|11|235|459; (*GB) gi|356517746|ref|XP_003527547.1| (e_value=0.0) PREDICTED: 8-amino-7-oxononanoate synthase-like [Glycine max];; (*SWP) sp|A3DBD5|BIOF_CLOTH (e_value=8e-64) Putative 8-amino-7-oxononanoate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bioF PE=3 SV=1;; (*TAIR) AT5G04620.2 (e_value=0.0) | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-1329934 FORWARD LENGTH=476;; (*ITAG) Solyc06g034150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00028908g0014.1 protein AED:0.17 eAED:0.23 QI:0|0.12|0|1|0|0|9|0|1380; (*GB) gi|559237|gb|AAA98492.1| (e_value=7e-55) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=2e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00028908g0001.1 protein AED:0.37 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|190 NbS00028908g0005.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.5|1|1|2|0|156 NbS00028908g0007.1 protein AED:0.95 eAED:0.98 QI:0|0|0|0.66|1|1|3|0|259 NbS00028908g0015.1 protein AED:0.67 eAED:1.00 QI:0|0|0|1|1|1|2|0|75 NbS00028908g0013.1 protein AED:0.45 eAED:0.56 QI:0|0|0|1|0|0|3|0|212 NbS00044368g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.25|0.75|1|1|4|0|199; (*GB) gi|215490181|dbj|BAG86624.1| (e_value=3e-129) type 2 proly 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=1e-21) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT5G18900.1 (e_value=1e-120) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6304409-6306166 REVERSE LENGTH=298;; (*ITAG) Solyc01g080530.2.1 (e_value=2e-139) genomic_reference:SL2.40ch01 gene_region:72279435-72287944 transcript_region:SL2.40ch01:72279435..72287944+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q8LAN3_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00016510g0004.1 protein AED:0.19 eAED:0.20 QI:0|0.81|0.66|0.91|0.45|0.5|12|0|402; (*GB) gi|192764525|gb|ACF05806.1| (e_value=8e-145) PAE [Litchi chinensis];; (*SWP) sp|Q6P988|NOTUM_HUMAN (e_value=3e-14) Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=4e-147) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075020.2.1 (e_value=5e-153) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00048105g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.75|1|0.66|0.5|4|82|248; (*GB) gi|53749474|gb|AAU90327.1| (e_value=1e-149) Xyloglucan endotransglucosylase/hydrolase protein 9 precursor, putative [Solanum demissum];; (*SWP) sp|Q8LDW9|XTH9_ARATH (e_value=9e-89) Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2;; (*TAIR) AT4G03210.1 (e_value=7e-90) | Symbols: XTH9 | xyloglucan endotransglucosylase/hydrolase 9 | chr4:1416019-1417197 FORWARD LENGTH=290;; (*ITAG) Solyc03g098430.2.1 (e_value=1e-151) genomic_reference:SL2.40ch03 gene_region:54182692-54184168 transcript_region:SL2.40ch03:54182692..54184168+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRH8_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00048105g0001.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|1|1|7|0|654; (*GB) gi|53749484|gb|AAU90337.1| (e_value=0.0) Putative receptor kinase-like protein, identical [Solanum demissum];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=4e-115) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=3e-116) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54171941-54175132 transcript_region:SL2.40ch03:54171941..54175132+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00048105g0013.1 protein AED:0.31 eAED:0.41 QI:0|0|0|1|0.25|0|5|0|493; (*GB) gi|113205417|gb|AAU90328.2| (e_value=0.0) Pentatricopeptide repeat domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q9S7F4|PP206_ARATH (e_value=1e-160) Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1;; (*TAIR) AT3G02010.1 (e_value=8e-162) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825;; (*ITAG) Solyc03g098420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54177254-54179882 transcript_region:SL2.40ch03:54177254..54179882+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2Q7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00048105g0007.1 protein AED:0.43 eAED:0.68 QI:0|0|0|1|1|1|2|0|185; (*GB) gi|113205417|gb|AAU90328.2| (e_value=6e-81) Pentatricopeptide repeat domain containing protein, putative [Solanum demissum];; (*SWP) sp|Q9S7F4|PP206_ARATH (e_value=4e-40) Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1;; (*TAIR) AT3G02010.1 (e_value=3e-41) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:337965-340442 FORWARD LENGTH=825;; (*ITAG) Solyc03g098420.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:54177254-54179882 transcript_region:SL2.40ch03:54177254..54179882+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L2Q7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00048105g0012.1 protein AED:0.97 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|104 NbS00048105g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|53749476|gb|AAU90329.1| (e_value=1e-46) hypothetical protein SDM1_56t00007 [Solanum demissum];; (*TAIR) AT2G25720.1 (e_value=2e-29) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10955664-10956017 REVERSE LENGTH=117;; (*ITAG) Solyc03g098410.1.1 (e_value=7e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:54175764-54176117 transcript_region:SL2.40ch03:54175764..54176117- functional_description:"Os04g0566000 protein (Fragment) (AHRD V1 *-*- Q0JAZ6_ORYSJ)"; NbS00009467g0003.1 protein AED:0.29 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|201; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00019277g0005.1 protein AED:0.51 eAED:0.51 QI:0|0|0.16|0.5|1|1|6|0|201; (*GB) gi|359482716|ref|XP_002263827.2| (e_value=2e-46) PREDICTED: uncharacterized protein LOC100263001 [Vitis vinifera];; (*TAIR) AT5G42670.1 (e_value=2e-31) | Symbols: | Agenet domain-containing protein | chr5:17108262-17110235 FORWARD LENGTH=294;; (*ITAG) Solyc03g005440.2.1 (e_value=2e-64) genomic_reference:SL2.40ch03 gene_region:326486-334139 transcript_region:SL2.40ch03:326486..334139+ go_terms:GO:0032259,GO:0003723 functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *--- Q9FMZ7_ARATH); contains Interpro domain(s) IPR008395 Agenet "; GO:0032259,GO:0003723 NbS00019277g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.88|0.8|1|0.77|0.8|10|296|1033; (*GB) gi|225432963|ref|XP_002284428.1| (e_value=0.0) PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera];; (*SWP) sp|Q8RY18|Y5436_ARATH (e_value=3e-149) MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1;; (*TAIR) AT1G04300.4 (e_value=0.0) | Symbols: | TRAF-like superfamily protein | chr1:1148818-1153895 REVERSE LENGTH=1055;; (*ITAG) Solyc09g089560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64606131-64617794 transcript_region:SL2.40ch09:64606131..64617794- functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00019277g0014.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0|0|3|0|101; (*GB) gi|356564099|ref|XP_003550294.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100789985 [Glycine max];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=2e-28) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G65790.1 (e_value=3e-30) | Symbols: ATMYB68, MYB68 | myb domain protein 68 | chr5:26323035-26324385 FORWARD LENGTH=374;; (*ITAG) Solyc08g065910.1.1 (e_value=8e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51457430-51458883 transcript_region:SL2.40ch08:51457430..51458883- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B7UCQ7_PANGI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00031059g0014.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0.25|4|0|397; (*GB) gi|147854984|emb|CAN82399.1| (e_value=1e-65) hypothetical protein VITISV_032215 [Vitis vinifera];; (*TAIR) AT1G29510.1 (e_value=9e-36) | Symbols: SAUR68 | SAUR-like auxin-responsive protein family | chr1:10322683-10323114 FORWARD LENGTH=143;; (*ITAG) Solyc11g011640.1.1 (e_value=7e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00031059g0010.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0.5|2|0|210; (*GB) gi|147846494|emb|CAN79514.1| (e_value=2e-72) hypothetical protein VITISV_014160 [Vitis vinifera];; (*TAIR) AT1G29500.1 (e_value=9e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=1e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00031059g0005.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|155; (*GB) gi|255565391|ref|XP_002523686.1| (e_value=1e-56) snf1-kinase beta subunit, plants, putative [Ricinus communis];; (*SWP) sp|Q9ZUU8|KINB3_ARATH (e_value=1e-44) SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1;; (*TAIR) AT2G28060.1 (e_value=9e-46) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr2:11950174-11950618 REVERSE LENGTH=114;; (*ITAG) Solyc06g010260.2.1 (e_value=1e-65) genomic_reference:SL2.40ch06 gene_region:5577524-5578199 transcript_region:SL2.40ch06:5577524..5578199- go_terms:GO:0005515 functional_description:"5'-AMP-activated protein kinase subunit beta-2 (AHRD V1 *-*- AAKB2_HUMAN); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0005515 NbS00000833g0001.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|164; (*GB) gi|323435170|ref|YP_004222388.1| (e_value=3e-70) hypothetical protein BevumaM_p155 [Beta vulgaris subsp. maritima];; (*SWP) sp|P93286|CCMF_ARATH (e_value=5e-42) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=6e-43) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=5e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00000833g0025.1 protein AED:0.45 eAED:0.51 QI:0|0|0|0.66|0.5|0.33|3|0|203; (*GB) gi|151368080|gb|ABS10772.1| (e_value=6e-91) apocytochrome b [Reinwardtia indica];; (*SWP) sp|P05718|CYB_VICFA (e_value=1e-89) Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2;; (*ITAG) ATMG00220.1 (e_value=4e-89) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=5e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00000833g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|57014003|ref|YP_173474.1| (e_value=1e-46) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT1G35580.3 (e_value=1e-29) | Symbols: CINV1 | cytosolic invertase 1 | chr1:13123183-13124808 REVERSE LENGTH=460;; (*ITAG) Solyc01g111100.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00000833g0017.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|81 NbS00000833g0031.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|106 NbS00000833g0030.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0|0|2|0|263; (*GB) gi|57014001|ref|YP_173472.1| (e_value=2e-162) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=1e-133) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=3e-134) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=1e-164) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00000833g0026.1 protein AED:0.38 eAED:0.41 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|791143|emb|CAA60171.1| (e_value=8e-72) ribosomal protein L5 [Solanum tuberosum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-70) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=2e-56) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00000833g0029.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|57014002|ref|YP_173473.1| (e_value=4e-33) hypothetical protein NitaMp136 [Nicotiana tabacum];; (*ITAG) Solyc00g021640.2.1 (e_value=5e-19) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00000833g0027.1 protein AED:0.45 eAED:0.49 QI:0|0|0|1|0|0|2|0|120; (*GB) gi|57013893|ref|YP_173367.1| (e_value=2e-61) ribosomal protein S14 [Nicotiana tabacum];; (*SWP) sp|P05716|RT14_VICFA (e_value=1e-29) Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=1e-24) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=2e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00000833g0028.1 protein AED:0.54 eAED:0.54 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=2e-54) Maturase [Medicago truncatula];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=9e-51) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*ITAG) ATMG01275.1 (e_value=6e-46) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325; NbS00000833g0032.1 protein AED:0.52 eAED:0.68 QI:0|0|0|0.66|0|0|3|0|91; (*GB) gi|357470609|ref|XP_003605589.1| (e_value=2e-30) Cytochrome b559 subunit alpha [Medicago truncatula];; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=1e-18) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=9e-20) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83; NbS00000833g0023.1 protein AED:0.08 eAED:0.36 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|290488884|gb|ADD30826.1| (e_value=8e-18) photosystem I P700 apoprotein A1 [Rhododendron simsii];; (*SWP) sp|Q332X8|PSAA_LACSA (e_value=7e-19) Photosystem I P700 chlorophyll a apoprotein A1 OS=Lactuca sativa GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=5e-20) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00001439g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|85 NbS00001439g0003.1 protein AED:0.62 eAED:0.71 QI:0|0|0.33|0.66|0.5|0.33|3|19|101 NbS00034568g0008.1 protein AED:0.31 eAED:0.33 QI:0|0.8|0.66|1|0.8|0.83|6|146|410; (*GB) gi|350536507|ref|NP_001233994.1| (e_value=0.0) proline transporter 3 [Solanum lycopersicum];; (*SWP) sp|Q38967|AAP2_ARATH (e_value=4e-20) Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1;; (*TAIR) AT3G55740.1 (e_value=0.0) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20695786-20698157 FORWARD LENGTH=439;; (*ITAG) Solyc05g052820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62136002-62140261 transcript_region:SL2.40ch05:62136002..62140261- go_terms:GO:0015193 functional_description:"Amino acid permease-like protein proline transporter-like protein (AHRD V1 **** Q9FJ34_ARATH); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00034568g0010.1 protein AED:0.33 eAED:0.33 QI:68|0.75|0.8|1|1|1|5|148|130; (*GB) gi|209967441|gb|ACJ02349.1| (e_value=3e-63) 60S ribosomal protein L35a [Vernicia fordii];; (*SWP) sp|Q9C912|R35A3_ARATH (e_value=1e-63) 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1;; (*TAIR) AT1G74270.1 (e_value=8e-65) | Symbols: | Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112;; (*ITAG) Solyc05g052800.2.1 (e_value=3e-69) genomic_reference:SL2.40ch05 gene_region:62130017-62132095 transcript_region:SL2.40ch05:62130017..62132095- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35a (AHRD V1 ***- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae "; GO:0003735 NbS00034568g0012.1 protein AED:0.34 eAED:0.35 QI:0|0.75|0.4|1|0.5|0.6|5|0|307; (*GB) gi|225449232|ref|XP_002279987.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Vitis vinifera];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00047200g0005.1 protein AED:0.30 eAED:0.48 QI:0|0|0|1|0|0|5|0|205; (*GB) gi|372480641|gb|AEX94002.1| (e_value=3e-42) hypothetical chloroplast RF19 (chloroplast) [Tulbaghia violacea];; (*SWP) sp|Q09FQ2|YCF1_NANDO (e_value=3e-38) Putative membrane protein ycf1 OS=Nandina domestica GN=ycf1 PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=6e-31) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021310.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00029259g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|0.66|0.5|0.66|3|0|76; (*GB) gi|224062892|ref|XP_002300922.1| (e_value=6e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1ZXK3|LSM3_DICDI (e_value=2e-22) Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1;; (*TAIR) AT1G76860.1 (e_value=3e-27) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98;; (*ITAG) Solyc11g005370.1.1 (e_value=4e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:296498-299974 transcript_region:SL2.40ch11:296498..299974- functional_description:"Small nuclear ribonucleoprotein LsM3 (AHRD V1 **-- D3TPY5_GLOMM); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00026246g0009.1 protein AED:0.05 eAED:0.07 QI:0|0|0|0.8|0.5|0.8|5|0|669; (*GB) gi|225458810|ref|XP_002283295.1| (e_value=7e-92) PREDICTED: uncharacterized protein LOC100242050 [Vitis vinifera];; (*TAIR) AT3G19570.1 (e_value=4e-48) | Symbols: SCO3, QWRF1 | Family of unknown function (DUF566) | chr3:6797778-6801293 FORWARD LENGTH=627;; (*ITAG) Solyc04g078000.2.1 (e_value=1e-157) genomic_reference:SL2.40ch04 gene_region:60456888-60465519 transcript_region:SL2.40ch04:60456888..60465519- go_terms:GO:0005737 functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; GO:0005737 NbS00026246g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|0.5|0.33|3|0|254; (*GB) gi|15240523|ref|NP_199774.1| (e_value=1e-140) amino acid permease 6 [Arabidopsis thaliana];; (*SWP) sp|P92934|AAP6_ARATH (e_value=3e-142) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=2e-143) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc04g077050.2.1 (e_value=1e-151) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00004103g0005.1 protein AED:0.36 eAED:0.36 QI:94|1|1|1|0.66|0.5|4|170|313; (*GB) gi|225459657|ref|XP_002285881.1| (e_value=0.0) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Vitis vinifera];; (*SWP) sp|Q0WPW4|ACCO5_ARATH (e_value=1e-164) 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1;; (*TAIR) AT1G77330.1 (e_value=7e-166) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307;; (*ITAG) Solyc06g060070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34368757-34371533 transcript_region:SL2.40ch06:34368757..34371533- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q9FR98_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00004103g0013.1 protein AED:0.09 eAED:0.12 QI:0|0.75|0.44|1|0.75|0.66|9|0|847; (*GB) gi|224066797|ref|XP_002302220.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5W3|NADK2_ARATH (e_value=0.0) NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1;; (*TAIR) AT1G21640.1 (e_value=0.0) | Symbols: NADK2, ATNADK2 | NAD kinase 2 | chr1:7588726-7592669 FORWARD LENGTH=985;; (*ITAG) Solyc11g005100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:82018-90812 transcript_region:SL2.40ch11:82018..90812- go_terms:GO:0005516,GO:0003951 functional_description:"NAD kinase 1 (AHRD V1 *-** B6U6Z9_MAIZE); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase "; GO:0005516,GO:0003951 NbS00004103g0102.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|1|1|4|0|193 NbS00004103g0112.1 protein AED:0.29 eAED:0.55 QI:147|0|0.33|1|1|0.33|3|0|165 NbS00004103g0103.1 protein AED:0.33 eAED:0.34 QI:355|0.8|0.83|1|1|1|6|0|192 NbS00004103g0202.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|129 NbS00004103g0215.1 protein AED:0.00 eAED:0.00 QI:299|1|1|1|0.5|0.66|3|165|75 NbS00004103g0203.1 protein AED:0.00 eAED:0.06 QI:0|1|0.5|1|0|0|2|440|322 NbS00004103g0214.1 protein AED:0.08 eAED:0.08 QI:112|0.81|0.83|0.91|0.81|0.83|12|411|441 NbS00008551g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.33|1|1|1|3|0|297; (*GB) gi|359489540|ref|XP_002274478.2| (e_value=2e-87) PREDICTED: probable pectinesterase/pectinesterase inhibitor 36 [Vitis vinifera];; (*SWP) sp|Q84R10|PME36_ARATH (e_value=6e-75) Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2;; (*TAIR) AT3G60730.1 (e_value=4e-76) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:22444955-22447226 FORWARD LENGTH=519;; (*ITAG) Solyc01g091060.1.1 (e_value=2e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76546392-76549258 transcript_region:SL2.40ch01:76546392..76549258+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD91_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008551g0001.1 protein AED:0.33 eAED:0.41 QI:0|0|0|1|1|1|3|0|132; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-23) hypothetical protein [Nicotiana tabacum]; NbS00008551g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|203; (*GB) gi|30695263|ref|NP_191632.2| (e_value=7e-113) putative pectinesterase/pectinesterase inhibitor 36 [Arabidopsis thaliana];; (*SWP) sp|Q84R10|PME36_ARATH (e_value=2e-114) Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=2;; (*TAIR) AT3G60730.1 (e_value=2e-115) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:22444955-22447226 FORWARD LENGTH=519;; (*ITAG) Solyc01g091060.1.1 (e_value=7e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76546392-76549258 transcript_region:SL2.40ch01:76546392..76549258+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD91_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008551g0103.1 protein AED:0.00 eAED:0.00 QI:102|1|1|1|1|1|2|196|525 NbS00036112g0001.1 protein AED:0.21 eAED:0.21 QI:467|1|1|1|0|0|3|918|218; (*GB) gi|255572931|ref|XP_002527396.1| (e_value=3e-105) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-92) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT3G13810.1 (e_value=4e-104) | Symbols: AtIDD11, IDD11 | indeterminate(ID)-domain 11 | chr3:4544941-4547300 FORWARD LENGTH=513;; (*ITAG) Solyc03g121660.2.1 (e_value=7e-101) genomic_reference:SL2.40ch03 gene_region:63812805-63815522 transcript_region:SL2.40ch03:63812805..63815522- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00045049g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|338; (*GB) gi|356545756|ref|XP_003541301.1| (e_value=5e-48) PREDICTED: transcription factor MYB12-like [Glycine max];; (*SWP) sp|Q9FJA2|TT2_ARATH (e_value=6e-40) Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1;; (*TAIR) AT5G35550.1 (e_value=4e-41) | Symbols: TT2, ATMYB123, MYB123, ATTT2 | Duplicated homeodomain-like superfamily protein | chr5:13726807-13727729 FORWARD LENGTH=258;; (*ITAG) Solyc12g049300.1.1 (e_value=7e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46232171-46233950 transcript_region:SL2.40ch12:46232171..46233950+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- D0VYJ9_DIOKA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00028099g0016.1 protein AED:0.27 eAED:0.27 QI:0|0.14|0|1|0.14|0.25|8|0|1181; (*GB) gi|75324231|sp|Q6L400.1|R1B16_SOLDE (e_value=4e-168) RecName: Full=Putative late blight resistance protein homolog R1B-16;; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-169) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=9e-26) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc05g007640.2.1 (e_value=2e-131) genomic_reference:SL2.40ch05 gene_region:2149733-2153957 transcript_region:SL2.40ch05:2149733..2153957+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00028099g0018.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|355; (*GB) gi|53831219|gb|AAU95282.1| (e_value=2e-157) R1 [Solanum tuberosum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=6e-153) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=2e-42) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007350.1.1 (e_value=2e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00028099g0015.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|0|0|3|0|520; (*GB) gi|48057658|gb|AAT39957.1| (e_value=4e-92) Putative late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=2e-90) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g007630.2.1 (e_value=1e-95) genomic_reference:SL2.40ch05 gene_region:2145078-2149204 transcript_region:SL2.40ch05:2145078..2149204- go_terms:GO:0006952,GO:0045893,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0045893,GO:0006915 NbS00028099g0017.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|193795963|gb|ACF22033.1| (e_value=7e-41) NBS-coding resistance gene protein [Nicotiana tabacum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=1e-35) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=7e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00008655g0006.1 protein AED:0.14 eAED:0.15 QI:340|0.74|0.82|1|0.96|0.89|28|0|1216; (*GB) gi|255573814|ref|XP_002527826.1| (e_value=0.0) tip120, putative [Ricinus communis];; (*SWP) sp|Q8L5Y6|CAND1_ARATH (e_value=0.0) Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1;; (*TAIR) AT2G02560.2 (e_value=0.0) | Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE | cullin-associated and neddylation dissociated | chr2:690345-697342 FORWARD LENGTH=1217;; (*ITAG) Solyc01g103010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83433700-83447869 transcript_region:SL2.40ch01:83433700..83447869+ go_terms:GO:0017025 functional_description:"Cullin-associated NEDD8-dissociated protein 2 (AHRD V1 ***- B0WPV6_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017025 NbS00008655g0009.1 protein AED:0.37 eAED:0.37 QI:229|0.5|0.33|0.66|1|0.66|3|0|78; (*GB) gi|224129794|ref|XP_002328804.1| (e_value=9e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT2G02570.4 (e_value=8e-27) | Symbols: | nucleic acid binding;RNA binding | chr2:698361-700794 REVERSE LENGTH=300;; (*ITAG) Solyc01g103020.2.1 (e_value=7e-39) genomic_reference:SL2.40ch01 gene_region:83450122-83456095 transcript_region:SL2.40ch01:83450122..83456095+ go_terms:GO:0005515 functional_description:"Survival of motor neuron-related-splicing factor 30 (AHRD V1 ***- C1BW46_ESOLU); contains Interpro domain(s) IPR018351 Tudor subgroup "; GO:0005515 NbS00008655g0105.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.70|0.94|0.62|0.70|17|356|656 NbS00017075g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|349; (*GB) gi|225460775|ref|XP_002276368.1| (e_value=8e-177) PREDICTED: probable serine/threonine-protein kinase WNK11 [Vitis vinifera];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=3e-164) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=2e-165) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc07g065250.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64310077-64312539 transcript_region:SL2.40ch07:64310077..64312539- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036271g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|383 NbS00036271g0009.1 protein AED:0.10 eAED:0.10 QI:0|1|0.88|1|0.75|0.55|9|214|519; (*GB) gi|255567689|ref|XP_002524823.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58046650-58049670 transcript_region:SL2.40ch07:58046650..58049670- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00036271g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|255567707|ref|XP_002524832.1| (e_value=4e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P13240|DR206_PEA (e_value=5e-13) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT5G42510.1 (e_value=6e-28) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr5:16998268-16998816 REVERSE LENGTH=182;; (*ITAG) Solyc07g052170.1.1 (e_value=2e-94) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58020129-58020662 transcript_region:SL2.40ch07:58020129..58020662+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YQZ6_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00036271g0011.1 protein AED:0.27 eAED:0.75 QI:64|0|0.5|1|1|1|2|0|61 NbS00036271g0010.1 protein AED:0.20 eAED:0.40 QI:0|0|0|1|0|0|3|0|116; (*GB) gi|157087398|gb|ABV21586.1| (e_value=2e-25) fatty acid desaturase [Capsicum annuum];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=1e-23) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=5e-24) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc12g100250.1.1 (e_value=3e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65373851-65374990 transcript_region:SL2.40ch12:65373851..65374990- go_terms:GO:0055114 functional_description:"Fatty acid desaturase (AHRD V1 ***- B3SP99_CAPAN); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0055114 NbC24913326g0003.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|0.66|0.5|0.66|3|0|170; (*GB) gi|359489254|ref|XP_002265189.2| (e_value=3e-78) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=3e-26) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.1 (e_value=5e-71) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:419650-422154 FORWARD LENGTH=461;; (*ITAG) Solyc01g088430.2.1 (e_value=2e-97) genomic_reference:SL2.40ch01 gene_region:74994993-74998519 transcript_region:SL2.40ch01:74994993..74998519+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00022326g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.5|1|1|1|4|0|285; (*GB) gi|348167268|gb|AEP68530.1| (e_value=1e-170) Sip1 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=1e-127) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.3 (e_value=1e-124) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261;; (*ITAG) Solyc05g054220.2.1 (e_value=5e-174) genomic_reference:SL2.40ch05 gene_region:63324752-63330929 transcript_region:SL2.40ch05:63324752..63330929- go_terms:GO:0019901 functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 **** C1BJ92_OSMMO); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00022326g0020.1 protein AED:0.14 eAED:0.14 QI:200|1|0.33|1|1|1|3|0|320; (*GB) gi|388497846|gb|AFK36989.1| (e_value=3e-30) unknown [Medicago truncatula];; (*TAIR) AT4G16380.1 (e_value=1e-28) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:9254638-9255955 FORWARD LENGTH=254;; (*ITAG) Solyc05g054210.2.1 (e_value=3e-42) genomic_reference:SL2.40ch05 gene_region:63317491-63319450 transcript_region:SL2.40ch05:63317491..63319450- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00022326g0018.1 protein AED:0.23 eAED:0.23 QI:0|0.57|0.62|0.87|0.71|0.87|8|242|342; (*GB) gi|147828008|emb|CAN70796.1| (e_value=6e-112) hypothetical protein VITISV_029203 [Vitis vinifera];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=2e-86) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=1e-87) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc05g054230.2.1 (e_value=4e-167) genomic_reference:SL2.40ch05 gene_region:63334861-63342158 transcript_region:SL2.40ch05:63334861..63342158- go_terms:GO:0008083 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008083 NbS00022326g0006.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|116 NbS00022326g0021.1 protein AED:0.26 eAED:0.26 QI:331|0.76|0.78|1|0.76|0.71|14|178|472; (*GB) gi|297736705|emb|CBI25741.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ATB4|TAD2B_ARATH (e_value=5e-146) Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1;; (*TAIR) AT4G16420.1 (e_value=4e-147) | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=487;; (*ITAG) Solyc05g054200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63300322-63307891 transcript_region:SL2.40ch05:63300322..63307891+ go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B3LFL4_YEAS1); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00022326g0028.1 protein AED:0.36 eAED:0.40 QI:0|0.33|0.25|1|0.66|0.75|4|0|196; (*GB) gi|226713184|sp|A7R385.1|CSPLC_VITVI (e_value=2e-83) RecName: Full=CASP-like protein GSVIVT00013502001;; (*SWP) sp|A7R385|CSPLC_VITVI (e_value=6e-85) CASP-like protein GSVIVT00013502001 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1;; (*TAIR) AT2G35760.1 (e_value=5e-65) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201;; (*ITAG) Solyc05g054190.2.1 (e_value=4e-92) genomic_reference:SL2.40ch05 gene_region:63294453-63299184 transcript_region:SL2.40ch05:63294453..63299184+ functional_description:"UPF0497 membrane protein 12 (AHRD V1 ***- U497C_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00053056g0005.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|1|0.5|0.33|3|0|551; (*GB) gi|354718776|gb|AER38245.1| (e_value=0.0) PME4 [Gossypium barbadense];; (*SWP) sp|Q43062|PME_PRUPE (e_value=0.0) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G33220.1 (e_value=0.0) | Symbols: PME44, ATPME44 | pectin methylesterase 44 | chr4:16022506-16026130 FORWARD LENGTH=525;; (*ITAG) Solyc07g017600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7622116-7627390 transcript_region:SL2.40ch07:7622116..7627390+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9P7W7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00047324g0006.1 protein AED:0.00 eAED:0.00 QI:143|1|1|1|1|1|2|333|146; (*GB) gi|255557947|ref|XP_002520002.1| (e_value=1e-71) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G17210.1 (e_value=9e-57) | Symbols: | Protein of unknown function (DUF1218) | chr5:5656519-5657970 FORWARD LENGTH=209;; (*ITAG) Solyc03g096860.2.1 (e_value=4e-91) genomic_reference:SL2.40ch03 gene_region:52681721-52685333 transcript_region:SL2.40ch03:52681721..52685333+ functional_description:"Fiber protein Fb34 (AHRD V1 ***- Q6T7D3_GOSBA); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00047324g0007.1 protein AED:0.07 eAED:0.07 QI:258|1|1|1|0.8|0.66|6|392|455; (*GB) gi|283837097|emb|CBH19893.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=2e-136) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33270.1 (e_value=0.0) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc03g096870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52685884-52688473 transcript_region:SL2.40ch03:52685884..52688473- go_terms:GO:0004872,GO:0008022 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872,GO:0008022 NbS00005043g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|169; (*GB) gi|23507177|gb|AAN38002.1| (e_value=1e-94) LEA1-like protein [Capsicum annuum];; (*SWP) sp|P46519|LEA14_SOYBN (e_value=2e-71) Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G46140.1 (e_value=2e-58) | Symbols: | Late embryogenesis abundant protein | chr2:18959163-18960362 FORWARD LENGTH=166;; (*ITAG) Solyc01g095150.2.1 (e_value=8e-96) genomic_reference:SL2.40ch01 gene_region:78285184-78287680 transcript_region:SL2.40ch01:78285184..78287680+ go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (Fragment) (AHRD V1 **-- B7TGE2_PINSY); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00005043g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|357452371|ref|XP_003596462.1| (e_value=2e-19) hypothetical protein MTR_2g077840 [Medicago truncatula];; (*TAIR) AT2G07820.1 (e_value=9e-19) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:3457213-3457479 REVERSE LENGTH=88;; (*ITAG) Solyc01g065920.1.1 (e_value=2e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch01 gene_region:65024242-65024502 transcript_region:SL2.40ch01:65024242..65024502- functional_description:"Unknown Protein (AHRD V1)"; NbS00026934g0005.1 protein AED:0.16 eAED:0.16 QI:223|1|1|1|0.88|0.8|10|170|538; (*GB) gi|224142519|ref|XP_002324603.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZP1|HPSE3_ARATH (e_value=0.0) Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2;; (*TAIR) AT5G34940.2 (e_value=0.0) | Symbols: AtGUS3, GUS3 | glucuronidase 3 | chr5:13235912-13238718 REVERSE LENGTH=536;; (*ITAG) Solyc07g007550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2221355-2226460 transcript_region:SL2.40ch07:2221355..2226460+ go_terms:GO:0030305,GO:0004566 functional_description:"Heparanase (AHRD V1 **** A2Y9Y7_ORYSI); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0030305,GO:0004566 NbS00050019g0004.1 protein AED:0.09 eAED:0.10 QI:0|0.83|0.42|1|0.83|0.85|7|0|599; (*GB) gi|350537985|ref|NP_001233809.1| (e_value=0.0) monoterpene synthase 2 [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=0.0) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25810.1 (e_value=0.0) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:9430805-9433844 FORWARD LENGTH=598;; (*ITAG) Solyc01g105880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00002993g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.84|0.7|1|0.89|0.85|20|524|1181; (*GB) gi|359477919|ref|XP_002270164.2| (e_value=0.0) PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera];; (*SWP) sp|Q14692|BMS1_HUMAN (e_value=3e-142) Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1;; (*TAIR) AT1G06720.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2060615-2067281 REVERSE LENGTH=1147;; (*ITAG) Solyc01g097640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80168709-80183856 transcript_region:SL2.40ch01:80168709..80183856+ go_terms:GO:0005525,GO:0034511,GO:0003924 functional_description:"Ribosome biogenesis protein BMS1 homolog (AHRD V1 *--- BMS1_HUMAN); contains Interpro domain(s) IPR007034 Protein of unknown function DUF663 "; GO:0005525,GO:0034511,GO:0003924 NbS00002993g0003.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|78 NbS00044244g0003.1 protein AED:0.01 eAED:0.01 QI:69|1|1|1|1|1|2|252|530; (*GB) gi|224130624|ref|XP_002320887.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O48927|C78A3_SOYBN (e_value=0.0) Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1;; (*TAIR) AT2G46660.1 (e_value=0.0) | Symbols: CYP78A6 | cytochrome P450, family 78, subfamily A, polypeptide 6 | chr2:19153602-19155417 REVERSE LENGTH=530;; (*ITAG) Solyc10g009310.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3349934-3352637 transcript_region:SL2.40ch10:3349934..3352637+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014307g0006.1 protein AED:0.39 eAED:0.41 QI:0|0.33|0.2|0.9|0.33|0.4|10|0|421; (*GB) gi|9989055|gb|AAG10818.1|AC011808_6 (e_value=2e-90) Hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT1G16650.1 (e_value=2e-76) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5687994-5691101 FORWARD LENGTH=521;; (*ITAG) Solyc07g066340.2.1 (e_value=4e-116) genomic_reference:SL2.40ch07 gene_region:65032869-65039520 transcript_region:SL2.40ch07:65032869..65039520- functional_description:"UPF0431 protein C1orf66 homolog (AHRD V1 **-- CA066_RAT)"; NbS00019405g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|1|1|1|5|0|134; (*GB) gi|359486525|ref|XP_002264331.2| (e_value=3e-57) PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera];; (*TAIR) AT5G04430.1 (e_value=3e-51) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc05g055450.2.1 (e_value=2e-73) genomic_reference:SL2.40ch05 gene_region:64240601-64247033 transcript_region:SL2.40ch05:64240601..64247033+ go_terms:GO:0003727 functional_description:"PolyrC-binding protein 2 (AHRD V1 **** B5X4N2_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003727 NbS00019405g0017.1 protein AED:0.23 eAED:0.23 QI:13|0.92|0.92|1|0.69|0.71|14|315|475; (*GB) gi|350537825|ref|NP_001234056.1| (e_value=0.0) malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|O48902|MDHP_MEDSA (e_value=0.0) Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1;; (*TAIR) AT5G58330.1 (e_value=0.0) | Symbols: | lactate/malate dehydrogenase family protein | chr5:23580010-23582287 REVERSE LENGTH=443;; (*ITAG) Solyc11g007990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2198505-2203902 transcript_region:SL2.40ch11:2198505..2203902+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q5NE17_SOLLC); contains Interpro domain(s) IPR011273 Malate dehydrogenase, NADP-dependent, plants "; GO:0030060 NbS00019405g0022.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|202; (*GB) gi|113205171|gb|AAT40519.2| (e_value=8e-14) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc03g071760.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00019405g0024.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|3|0|122; (*GB) gi|255583738|ref|XP_002532622.1| (e_value=1e-35) Far upstream element-binding protein, putative [Ricinus communis];; (*TAIR) AT5G04430.1 (e_value=5e-30) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc11g007940.1.1 (e_value=2e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2168262-2174193 transcript_region:SL2.40ch11:2168262..2174193+ go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 3 (AHRD V1 ***- Q6AY48_RAT); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00019774g0007.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|267; (*GB) gi|225458830|ref|XP_002285308.1| (e_value=3e-168) PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=4e-57) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT3G03990.1 (e_value=4e-159) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:1033788-1034591 FORWARD LENGTH=267;; (*ITAG) Solyc04g077860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60335672-60337954 transcript_region:SL2.40ch04:60335672..60337954- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **** Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbC25175489g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|126143476|dbj|BAF47277.1| (e_value=0.0) lectin-receptor like protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=1e-118) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G04960.1 (e_value=8e-120) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:2533096-2535156 FORWARD LENGTH=686;; (*ITAG) Solyc02g078170.1.1 (e_value=4e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00018384g0011.1 protein AED:0.33 eAED:0.34 QI:0|0.77|0.5|1|0.66|0.7|10|0|511; (*GB) gi|15147828|emb|CAC50871.1| (e_value=0.0) ferrochelatase [Nicotiana tabacum];; (*SWP) sp|O04921|HEMH2_ARATH (e_value=0.0) Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1;; (*TAIR) AT2G30390.1 (e_value=0.0) | Symbols: FC2, FC-II, ATFC-II | ferrochelatase 2 | chr2:12951242-12953985 REVERSE LENGTH=512;; (*ITAG) Solyc05g018650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22680872-22699780 transcript_region:SL2.40ch05:22680872..22699780- go_terms:GO:0004325 functional_description:"Ferrochelatase (AHRD V1 **** O64391_SOLTU); contains Interpro domain(s) IPR001015 Ferrochelatase "; GO:0004325 NbS00028424g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|76160933|gb|ABA40430.1| (e_value=3e-99) ribosomal protein L27a-like protein [Solanum tuberosum];; (*SWP) sp|P49637|R27A3_ARATH (e_value=3e-86) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=3e-87) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc06g071720.1.1 (e_value=8e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40574165-40574611 transcript_region:SL2.40ch06:40574165..40574611- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00028424g0005.1 protein AED:0.13 eAED:0.13 QI:161|1|1|1|0.66|0.5|4|180|231; (*GB) gi|255540535|ref|XP_002511332.1| (e_value=6e-77) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G47740.1 (e_value=5e-28) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=244;; (*ITAG) Solyc03g112330.2.1 (e_value=1e-81) genomic_reference:SL2.40ch03 gene_region:56815336-56817659 transcript_region:SL2.40ch03:56815336..56817659+ go_terms:GO:0006950 functional_description:"U-box domain-containing protein 33 (AHRD V1 ***- PUB33_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00033590g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|70 NbS00033590g0014.1 protein AED:0.32 eAED:0.32 QI:0|0.57|0.5|0.87|0.42|0.5|8|0|502; (*GB) gi|326487312|dbj|BAJ89640.1| (e_value=2e-171) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-72) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=1e-150) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc06g048940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28496228-28500434 transcript_region:SL2.40ch06:28496228..28500434+ go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00033590g0006.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.33|1|1|3|0|80 NbS00033590g0015.1 protein AED:0.17 eAED:0.62 QI:16|0|0|1|1|1|2|110|19 NbS00018304g0004.1 protein AED:0.35 eAED:0.36 QI:0|0.66|0.5|1|1|1|4|546|175; (*GB) gi|224134755|ref|XP_002321898.1| (e_value=1e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52200.1 (e_value=2e-30) | Symbols: | phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191;; (*ITAG) Solyc03g025980.2.1 (e_value=5e-61) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00029573g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|225445686|ref|XP_002267305.1| (e_value=2e-69) PREDICTED: serine/threonine-protein kinase HT1-like [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-30) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=7e-66) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042680.2.1 (e_value=9e-73) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00029573g0001.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|356; (*GB) gi|109727320|gb|ABG45945.1| (e_value=0.0) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-54) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G31170.3 (e_value=2e-152) | Symbols: | Protein kinase superfamily protein | chr4:15153499-15154846 REVERSE LENGTH=412;; (*ITAG) Solyc07g042680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00029573g0012.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.16|1|1|6|0|357; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-58) hypothetical protein [Nicotiana tabacum]; NbS00029573g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.71|0.5|0.87|0.71|0.87|8|0|590; (*GB) gi|147861251|emb|CAN81475.1| (e_value=2e-166) hypothetical protein VITISV_039649 [Vitis vinifera];; (*SWP) sp|Q0VCZ3|YTHD2_BOVIN (e_value=3e-58) YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1;; (*TAIR) AT3G13060.2 (e_value=8e-135) | Symbols: ECT5 | evolutionarily conserved C-terminal region 5 | chr3:4180625-4183632 FORWARD LENGTH=634;; (*ITAG) Solyc05g032850.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:45405216-45415463 transcript_region:SL2.40ch05:45405216..45415463+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *-*- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00054171g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|394; (*GB) gi|325516254|gb|ADZ24705.1| (e_value=4e-179) arogenate dehydrogenase 2 [Solanum pennellii];; (*SWP) sp|Q9LMR3|TYRA2_ARATH (e_value=7e-125) Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1;; (*TAIR) AT1G15710.1 (e_value=6e-126) | Symbols: | prephenate dehydrogenase family protein | chr1:5404505-5405581 FORWARD LENGTH=358;; (*ITAG) Solyc09g011870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5152436-5153608 transcript_region:SL2.40ch09:5152436..5153608- go_terms:GO:0008152,GO:0006571 functional_description:"Prephenate dehydrogenase family protein (AHRD V1 ***- D7KDI5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0006571 NbS00054171g0002.1 protein AED:0.29 eAED:0.29 QI:212|1|0.85|1|1|1|7|0|431; (*GB) gi|255573913|ref|XP_002527875.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9Y2M2|CC032_HUMAN (e_value=3e-31) Uncharacterized protein C3orf32 OS=Homo sapiens GN=C3orf32 PE=2 SV=1;; (*TAIR) AT2G38000.1 (e_value=0.0) | Symbols: | chaperone protein dnaJ-related | chr2:15903315-15905276 REVERSE LENGTH=419;; (*ITAG) Solyc09g011880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5155740-5160598 transcript_region:SL2.40ch09:5155740..5160598- functional_description:"LOC556397 protein (Fragment) (AHRD V1 **-- Q05AJ0_DANRE)"; NbS00020464g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.85|1|1|1|7|320|411; (*GB) gi|1778145|gb|AAB40648.1| (e_value=2e-153) phosphate/phosphoenolpyruvate translocator precursor [Nicotiana tabacum];; (*SWP) sp|Q8RXN3|PPT1_ARATH (e_value=3e-119) Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1;; (*TAIR) AT5G33320.1 (e_value=2e-120) | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/phosphate translocator-related | chr5:12588950-12591408 FORWARD LENGTH=408;; (*ITAG) Solyc03g112870.2.1 (e_value=1e-155) genomic_reference:SL2.40ch03 gene_region:57216669-57220808 transcript_region:SL2.40ch03:57216669..57220808+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6P/phosphate translocator (AHRD V1 **** Q9MSB4_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00020464g0011.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|1|1|2|0|188; (*GB) gi|113205400|gb|AAU90303.2| (e_value=2e-21) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc11g050970.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:42088064-42090018 transcript_region:SL2.40ch11:42088064..42090018+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00020464g0012.1 protein AED:0.53 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc03g112900.2.1 (e_value=2e-25) genomic_reference:SL2.40ch03 gene_region:57238077-57241465 transcript_region:SL2.40ch03:57238077..57241465+ go_terms:GO:0008198 functional_description:"Iron-sulfur cluster assembly scaffold protein IscU (AHRD V1 **** D0I7Q6_VIBHO); contains Interpro domain(s) IPR002871 NIF system FeS cluster assembly, NifU, N-terminal "; GO:0008198 NbS00020464g0001.1 protein AED:0.34 eAED:0.39 QI:0|0.2|0.16|0.83|1|1|6|0|282; (*GB) gi|297733766|emb|CBI15013.3| (e_value=8e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2VZE7|APAG_MAGSA (e_value=9e-32) Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1;; (*ITAG) Solyc12g021360.1.1 (e_value=2e-148) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:16026938-16041330 transcript_region:SL2.40ch12:16026938..16041330+ go_terms:GO:0006289 functional_description:"ApaG (AHRD V1 *-*- A6GAQ0_9DELT); contains Interpro domain(s) IPR007474 ApaG "; GO:0006289 NbS00020464g0026.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.33|0.6|0.5|6|0|371; (*ITAG) Solyc08g016280.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7052445-7056982 transcript_region:SL2.40ch08:7052445..7056982+ go_terms:GO:0006508 functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00020464g0023.1 protein AED:0.42 eAED:0.50 QI:0|0|0|1|0|0|2|0|90; (*ITAG) Solyc01g057890.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:57024979-57027433 transcript_region:SL2.40ch01:57024979..57027433- functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9LTL3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00023656g0015.1 protein AED:0.09 eAED:0.09 QI:105|0.83|0.71|1|0.83|0.71|7|333|520; (*GB) gi|225443950|ref|XP_002272255.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256651 [Vitis vinifera];; (*TAIR) AT1G30320.1 (e_value=1e-109) | Symbols: | Remorin family protein | chr1:10680348-10682852 FORWARD LENGTH=509;; (*ITAG) Solyc08g045640.2.1 (e_value=5e-144) genomic_reference:SL2.40ch08 gene_region:35144163-35146943 transcript_region:SL2.40ch08:35144163..35146943+ go_terms:GO:0003677 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *--* Q42051_ARATH); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00023656g0014.1 protein AED:0.24 eAED:0.24 QI:145|1|1|1|1|1|9|411|461; (*GB) gi|359483898|ref|XP_002271644.2| (e_value=0.0) PREDICTED: endoplasmic oxidoreductin-1-like [Vitis vinifera];; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=0.0) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1;; (*TAIR) AT1G72280.1 (e_value=0.0) | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469;; (*ITAG) Solyc07g056390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 "; GO:0015035 NbS00023656g0016.1 protein AED:0.26 eAED:0.26 QI:172|0.66|0.75|1|0.66|0.5|4|1042|118; (*GB) gi|225443930|ref|XP_002271683.1| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100256572 [Vitis vinifera];; (*TAIR) AT4G18400.1 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10170024-10171221 REVERSE LENGTH=107;; (*ITAG) Solyc08g022120.2.1 (e_value=2e-34) genomic_reference:SL2.40ch08 gene_region:12254716-12257910 transcript_region:SL2.40ch08:12254716..12257910- functional_description:"Unknown Protein (AHRD V1)"; NbS00018954g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.57|0.85|1|1|7|0|444; (*GB) gi|348659075|gb|AEP82775.1| (e_value=0.0) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=2e-175) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=1e-111) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc04g054380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:51572819-51575927 transcript_region:SL2.40ch04:51572819..51575927- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00018954g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|67 NbS00023893g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|0.66|3|0|315; (*GB) gi|190684637|gb|ACE82566.1| (e_value=0.0) epoxide hydrolase [Nicotiana benthamiana];; (*SWP) sp|P34913|HYES_HUMAN (e_value=5e-46) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT3G05600.1 (e_value=1e-152) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:1623485-1624704 REVERSE LENGTH=331;; (*ITAG) Solyc01g099910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81790682-81793630 transcript_region:SL2.40ch01:81790682..81793630- go_terms:GO:0003824 functional_description:"Epoxide hydrolase (AHRD V1 ***- B3VMR4_NICBE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00023893g0003.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.25|1|1|4|0|177; (*GB) gi|335059680|gb|AEH27114.1| (e_value=3e-65) ribosomal protein S3 [Solanum lycopersicum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=2e-66) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=8e-54) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=1e-65) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00045629g0004.1 protein AED:0.24 eAED:0.26 QI:12|0|0|1|0|0|3|0|445; (*GB) gi|3913423|sp|O04009.1|DCAM_TOBAC (e_value=0.0) RecName: Full=S-adenosylmethionine decarboxylase proenzyme; Short=AdoMetDC; Short=SAMDC; Contains: RecName: Full=S-adenosylmethionine decarboxylase alpha chain; Contains: RecName: Full=S-adenosylmethionine decarboxylase beta chain; Flags: Precursor;; (*SWP) sp|O04009|DCAM_TOBAC (e_value=0.0) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1;; (*TAIR) AT3G25570.2 (e_value=3e-153) | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349;; (*ITAG) Solyc05g010420.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00006039g0017.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.7|0.9|0.88|0.9|10|39|820; (*GB) gi|350538581|ref|NP_001234350.1| (e_value=0.0) meiotic serine proteinase [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-79) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G19170.1 (e_value=0.0) | Symbols: SLP3 | subtilisin-like serine protease 3 | chr2:8314154-8317620 REVERSE LENGTH=815;; (*ITAG) Solyc08g077860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58944472-58948879 transcript_region:SL2.40ch08:58944472..58948879+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00006039g0021.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|0.5|1|1|4|347|135; (*GB) gi|110740266|dbj|BAF02030.1| (e_value=2e-60) hypothetical protein [Arabidopsis thaliana];; (*SWP) sp|Q13395|TARB1_HUMAN (e_value=6e-34) Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1;; (*TAIR) AT4G17610.1 (e_value=8e-58) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=6e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00006039g0023.1 protein AED:0.03 eAED:0.11 QI:0|0|0|1|1|1|2|0|456; (*GB) gi|357517641|ref|XP_003629109.1| (e_value=3e-74) Ankyrin repeat protein [Medicago truncatula];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=2e-15) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT5G15500.2 (e_value=5e-64) | Symbols: | Ankyrin repeat family protein | chr5:5031791-5033443 REVERSE LENGTH=457;; (*ITAG) Solyc06g074280.2.1 (e_value=6e-65) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00006039g0024.1 protein AED:0.24 eAED:0.24 QI:0|0.85|0.87|1|0.57|0.62|8|583|271; (*GB) gi|359807363|ref|NP_001241125.1| (e_value=4e-124) uncharacterized protein LOC100785827 [Glycine max];; (*SWP) sp|Q8LB10|CLPR4_ARATH (e_value=2e-123) ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1;; (*TAIR) AT4G17040.1 (e_value=2e-124) | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9586740-9589297 REVERSE LENGTH=305;; (*ITAG) Solyc08g077890.2.1 (e_value=3e-131) genomic_reference:SL2.40ch08 gene_region:58960412-58967215 transcript_region:SL2.40ch08:58960412..58967215+ go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** D7MC33_ARALY); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00006039g0019.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|0.66|3|0|168; (*GB) gi|356563397|ref|XP_003549950.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100781097 [Glycine max];; (*ITAG) Solyc08g077870.2.1 (e_value=9e-58) genomic_reference:SL2.40ch08 gene_region:58948955-58949961 transcript_region:SL2.40ch08:58948955..58949961- functional_description:"Unknown Protein (AHRD V1)"; NbS00006039g0020.1 protein AED:0.23 eAED:0.26 QI:34|0.33|0.75|1|1|1|4|340|281; (*GB) gi|224137948|ref|XP_002326480.1| (e_value=2e-97) light harvesting-like protein 3 [Populus trichocarpa];; (*TAIR) AT4G17600.1 (e_value=3e-87) | Symbols: LIL3:1 | Chlorophyll A-B binding family protein | chr4:9803759-9804714 FORWARD LENGTH=262;; (*ITAG) Solyc08g077880.2.1 (e_value=3e-150) genomic_reference:SL2.40ch08 gene_region:58954741-58956863 transcript_region:SL2.40ch08:58954741..58956863- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- B9N2V9_POPTR)"; NbS00007167g0001.1 protein AED:0.24 eAED:0.24 QI:490|0.88|0.9|1|0.22|0.3|10|1026|260; (*GB) gi|225461582|ref|XP_002282878.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100264059 [Vitis vinifera];; (*TAIR) AT1G53190.2 (e_value=7e-11) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc12g014070.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4889094-4892699 transcript_region:SL2.40ch12:4889094..4892699+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 ***- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018945g0009.1 protein AED:0.30 eAED:0.30 QI:161|0.5|0.8|1|0.5|0.4|5|27|139; (*GB) gi|315259982|gb|ADT92189.1| (e_value=7e-72) cleavage and polyadenylation specificity factor 5 [Zea mays];; (*SWP) sp|Q4KM65|CPSF5_RAT (e_value=7e-46) Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1;; (*TAIR) AT4G25550.1 (e_value=7e-59) | Symbols: | Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200;; (*ITAG) Solyc03g025880.2.1 (e_value=6e-74) genomic_reference:SL2.40ch03 gene_region:7657669-7669323 transcript_region:SL2.40ch03:7657669..7669323- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- B9EQF4_SALSA); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00018945g0005.1 protein AED:0.26 eAED:0.26 QI:0|0.2|0.33|0.33|0.8|0.83|6|838|189; (*GB) gi|49615728|gb|AAT67046.1| (e_value=1e-33) DNA mismatch repair protein [Petunia x hybrida];; (*ITAG) Solyc03g025890.1.1 (e_value=4e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7671920-7692944 transcript_region:SL2.40ch03:7671920..7692944+ go_terms:GO:0032357,GO:0032137 functional_description:"DNA mismatch repair protein mutS (AHRD V1 **** B0K9L5_THEP3); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0032357,GO:0032137 NbS00060451g0001.1 protein AED:0.08 eAED:0.13 QI:0|0.8|0.33|1|1|1|6|0|1046; (*GB) gi|224130284|ref|XP_002320799.1| (e_value=3e-145) predicted protein [Populus trichocarpa];; (*TAIR) AT2G45900.1 (e_value=1e-27) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:18886069-18888674 REVERSE LENGTH=720;; (*ITAG) Solyc01g094640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77836349-77842064 transcript_region:SL2.40ch01:77836349..77842064- functional_description:"( related) (AHRD V1 ***- Q2HTJ8_MEDTR)"; NbS00060451g0002.1 protein AED:0.44 eAED:0.46 QI:0|1|0|1|1|1|3|0|139; (*GB) gi|359490980|ref|XP_003634193.1| (e_value=4e-32) PREDICTED: uncharacterized protein LOC100852715 [Vitis vinifera];; (*TAIR) AT3G61370.1 (e_value=2e-13) | Symbols: | Protein of unknown function (DUF3245) | chr3:22707796-22708380 FORWARD LENGTH=127;; (*ITAG) Solyc01g094630.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:77834979-77835608 transcript_region:SL2.40ch01:77834979..77835608+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017711g0009.1 protein AED:0.20 eAED:0.20 QI:209|1|1|1|0.5|0.28|7|390|127; (*GB) gi|255548958|ref|XP_002515535.1| (e_value=1e-64) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O22969|Y2416_ARATH (e_value=2e-60) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT2G34160.1 (e_value=2e-61) | Symbols: | Alba DNA/RNA-binding protein | chr2:14426283-14427220 FORWARD LENGTH=130;; (*ITAG) Solyc06g066100.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:37826995-37830559 transcript_region:SL2.40ch06:37826995..37830559- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00017711g0006.1 protein AED:0.18 eAED:0.22 QI:195|0.69|0.64|1|0.69|0.64|14|529|502; (*GB) gi|225430251|ref|XP_002282599.1| (e_value=0.0) PREDICTED: lactation elevated protein 1 [Vitis vinifera];; (*SWP) sp|Q32PX9|LACE1_RAT (e_value=2e-55) Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1;; (*TAIR) AT2G25530.1 (e_value=0.0) | Symbols: | AFG1-like ATPase family protein | chr2:10863059-10866597 FORWARD LENGTH=655;; (*ITAG) Solyc06g066090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37815304-37826469 transcript_region:SL2.40ch06:37815304..37826469+ go_terms:GO:0016887 functional_description:"AFG1-family ATPase (AHRD V1 *-** D1CU44_9RHIZ); contains Interpro domain(s) IPR005654 ATPase, AFG1-like "; GO:0016887 NbS00003150g0007.1 protein AED:0.13 eAED:0.14 QI:395|1|0.75|1|0.33|0.25|4|0|333; (*GB) gi|37572443|dbj|BAC98491.1| (e_value=4e-157) AG-motif binding protein-1 [Nicotiana tabacum];; (*SWP) sp|Q6DBP8|GAT11_ARATH (e_value=6e-36) GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1;; (*TAIR) AT1G08010.2 (e_value=4e-37) | Symbols: GATA11 | GATA transcription factor 11 | chr1:2486202-2487402 REVERSE LENGTH=303;; (*ITAG) Solyc05g056120.2.1 (e_value=4e-143) genomic_reference:SL2.40ch05 gene_region:64658159-64662581 transcript_region:SL2.40ch05:64658159..64662581- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00057401g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|145 NbS00057401g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|207; (*GB) gi|255562556|ref|XP_002522284.1| (e_value=2e-107) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G45690.1 (e_value=1e-88) | Symbols: | Protein of unknown function (DUF1264) | chr5:18535139-18536259 REVERSE LENGTH=247;; (*ITAG) Solyc03g005940.2.1 (e_value=2e-126) genomic_reference:SL2.40ch03 gene_region:633860-635554 transcript_region:SL2.40ch03:633860..635554- functional_description:"DUF1264 domain protein (AHRD V1 **-- A1CBM4_ASPCL); contains Interpro domain(s) IPR010686 Protein of unknown function DUF1264 "; NbS00057401g0009.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|146; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-43) hypothetical protein [Nicotiana tabacum]; NbS00037001g0008.1 protein AED:0.17 eAED:0.17 QI:14|0.5|0.33|0.66|1|1|3|0|89; (*GB) gi|389986119|gb|AFL46177.1| (e_value=2e-53) jasmonate ZIM domain protein l [Nicotiana attenuata];; (*ITAG) Solyc01g103600.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:83937777-83940070 transcript_region:SL2.40ch01:83937777..83940070- go_terms:GO:0005515 functional_description:"Protein TIFY 3A (AHRD V1 **-- TIF3A_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00037001g0009.1 protein AED:0.26 eAED:0.34 QI:13|0.71|0.87|1|0.71|0.87|8|785|536; (*GB) gi|225448132|ref|XP_002263202.1| (e_value=6e-129) PREDICTED: uncharacterized sodium-dependent transporter yocS-like [Vitis vinifera];; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-25) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT2G26900.1 (e_value=5e-42) | Symbols: | Sodium Bile acid symporter family | chr2:11475156-11477870 REVERSE LENGTH=409;; (*ITAG) Solyc01g103620.2.1 (e_value=4e-178) genomic_reference:SL2.40ch01 gene_region:83943092-83946456 transcript_region:SL2.40ch01:83943092..83946456- go_terms:GO:0015370 functional_description:"Sodium Bile acid symporter family protein expressed (AHRD V1 **** Q2QX41_ORYSJ); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0015370 NbS00003422g0004.1 protein AED:0.10 eAED:0.16 QI:138|0.5|0.8|1|1|1|5|270|229; (*GB) gi|224063657|ref|XP_002301250.1| (e_value=2e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|O82528|RL15_PETHY (e_value=1e-115) 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1;; (*TAIR) AT4G16720.1 (e_value=3e-111) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204;; (*ITAG) Solyc06g060400.2.1 (e_value=1e-122) genomic_reference:SL2.40ch06 gene_region:34803093-34805179 transcript_region:SL2.40ch06:34803093..34805179- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbS00043962g0005.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|0.5|0.33|3|352|310; (*GB) gi|359472655|ref|XP_002282967.2| (e_value=9e-80) PREDICTED: zinc finger CCCH domain-containing protein 15 [Vitis vinifera];; (*SWP) sp|Q9C9F5|C3H15_ARATH (e_value=2e-59) Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis thaliana GN=At1g68200 PE=2 SV=1;; (*TAIR) AT1G68200.1 (e_value=1e-60) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:25562118-25563948 FORWARD LENGTH=308;; (*ITAG) Solyc05g008670.2.1 (e_value=1e-148) genomic_reference:SL2.40ch05 gene_region:2957972-2959919 transcript_region:SL2.40ch05:2957972..2959919- go_terms:GO:0003700 functional_description:"Zinc finger protein 36 C3H type-like 1 (Fragment) (AHRD V1 *-*- C5H179_XANVI); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbC25710626g0004.1 protein AED:0.12 eAED:0.13 QI:0|1|1|1|0.8|0.83|6|0|191; (*GB) gi|224097482|ref|XP_002310954.1| (e_value=7e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=1e-59) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT1G16880.2 (e_value=3e-60) | Symbols: | uridylyltransferase-related | chr1:5773796-5775272 FORWARD LENGTH=213;; (*ITAG) Solyc03g117890.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:60949790-60953035 transcript_region:SL2.40ch03:60949790..60953035- functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"; NbS00002074g0010.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.33|1|0.87|0.88|9|246|404; (*GB) gi|342730594|gb|AEL33280.1| (e_value=6e-177) putative auxin-induced protein [Camellia sinensis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=6e-50) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G19185.1 (e_value=7e-148) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:10489201-10491488 REVERSE LENGTH=398;; (*ITAG) Solyc12g096160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63527617-63533159 transcript_region:SL2.40ch12:63527617..63533159- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00002074g0009.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|249; (*GB) gi|27085290|gb|AAN85436.1| (e_value=3e-74) acyltransferase 2 [Capsicum chinense];; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=1e-60) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=5e-46) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc05g015800.2.1 (e_value=3e-80) genomic_reference:SL2.40ch05 gene_region:12077217-12079028 transcript_region:SL2.40ch05:12077217..12079028+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00010166g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0.14|1|0.33|0.42|7|0|371; (*GB) gi|377823844|gb|AFB77197.1| (e_value=1e-67) male sterility protein 2, partial [Lycium barbarum];; (*SWP) sp|B9TSP7|FACR6_ARATH (e_value=2e-56) Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1;; (*TAIR) AT3G11980.1 (e_value=1e-54) | Symbols: MS2, FAR2 | Jojoba acyl CoA reductase-related male sterility protein | chr3:3814484-3816927 FORWARD LENGTH=616;; (*ITAG) Solyc09g009580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2998275-3003078 transcript_region:SL2.40ch09:2998275..3003078+ go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00022532g0009.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.75|0.6|5|383|388; (*GB) gi|255587510|ref|XP_002534297.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LTR2|TGD2_ARATH (e_value=0.0) Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1;; (*TAIR) AT3G20320.1 (e_value=0.0) | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr3:7087657-7089640 REVERSE LENGTH=381;; (*ITAG) Solyc02g082030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40335615-40339430 transcript_region:SL2.40ch02:40335615..40339430+ go_terms:GO:0005319,GO:0005543 functional_description:"ABC-type transport system-like (AHRD V1 **-- Q5JL23_ORYSJ); contains Interpro domain(s) IPR003399 Mammalian cell entry related "; GO:0005319,GO:0005543 NbS00019353g0004.1 protein AED:0.11 eAED:0.16 QI:47|0.25|0.2|0.8|0.75|0.6|5|0|329; (*GB) gi|15082058|gb|AAK84008.1|AF393847_1 (e_value=4e-158) beta-amylase PCT-BMYI [Solanum tuberosum];; (*SWP) sp|O23553|BAM3_ARATH (e_value=3e-148) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=3e-149) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g007130.2.1 (e_value=9e-174) genomic_reference:SL2.40ch08 gene_region:1700691-1704229 transcript_region:SL2.40ch08:1700691..1704229+ go_terms:GO:0016161 functional_description:"Beta-amylase 8 (AHRD V1 **** D7MC27_ARALY); contains Interpro domain(s) IPR001554 Glycoside hydrolase, family 14 "; GO:0016161 NbS00014488g0014.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|169|88 NbS00014488g0001.1 protein AED:0.19 eAED:0.21 QI:0|0|0.5|1|0|0.5|2|60|863; (*GB) gi|302594419|gb|ADL59399.1| (e_value=0.0) HJTR2GH1 protein [Solanum hjertingii];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=1e-144) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=9e-146) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g009290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2735950-2738484 transcript_region:SL2.40ch04:2735950..2738484- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00014488g0013.1 protein AED:0.09 eAED:0.18 QI:0|0|0|1|0|0|2|0|189; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-19) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=6e-52) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00014488g0015.1 protein AED:0.54 eAED:0.88 QI:0|0|0|0.66|0|0|3|0|60 NbS00049943g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|1|0.66|3|0|136; (*GB) gi|356572544|ref|XP_003554428.1| (e_value=3e-73) PREDICTED: probable purple acid phosphatase 20-like [Glycine max];; (*SWP) sp|Q9LXI7|PPA20_ARATH (e_value=1e-68) Probable purple acid phosphatase 20 OS=Arabidopsis thaliana GN=PAP20 PE=2 SV=1;; (*TAIR) AT3G52780.1 (e_value=1e-69) | Symbols: ATPAP20, PAP20 | Purple acid phosphatases superfamily protein | chr3:19561525-19564195 REVERSE LENGTH=427;; (*ITAG) Solyc09g009610.1.1 (e_value=5e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3023290-3027216 transcript_region:SL2.40ch09:3023290..3027216+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00016054g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.75|1|1|0.75|4|395|518; (*GB) gi|42567700|ref|NP_568173.2| (e_value=1e-132) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G06700.1 (e_value=2e-135) | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608;; (*ITAG) Solyc10g080550.1.1 (e_value=2e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61117464-61119915 transcript_region:SL2.40ch10:61117464..61119915- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00001539g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|0.5|0.33|3|0|168; (*GB) gi|213385143|dbj|BAG84267.1| (e_value=5e-65) phenylcoumaran benzylic ether reductase [Nicotiana tabacum];; (*SWP) sp|P52577|IFRH_ARATH (e_value=2e-52) Isoflavone reductase homolog P3 OS=Arabidopsis thaliana GN=At1g75280 PE=1 SV=1;; (*TAIR) AT4G39230.1 (e_value=6e-56) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr4:18266024-18267604 REVERSE LENGTH=308;; (*ITAG) Solyc04g080550.2.1 (e_value=2e-65) genomic_reference:SL2.40ch04 gene_region:62277983-62280069 transcript_region:SL2.40ch04:62277983..62280069+ go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00001539g0004.1 protein AED:0.86 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|106 NbS00001539g0104.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.66|0.66|1|1|3|190|126 NbS00001539g0103.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|59 NbS00009319g0012.1 protein AED:0.29 eAED:0.29 QI:366|0.75|0.4|1|0.5|0.6|5|0|295; (*GB) gi|147797982|emb|CAN65010.1| (e_value=6e-111) hypothetical protein VITISV_027349 [Vitis vinifera];; (*SWP) sp|Q940U6|FLU_ARATH (e_value=4e-101) Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1;; (*TAIR) AT3G14110.2 (e_value=1e-103) | Symbols: FLU | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4676222-4677010 REVERSE LENGTH=232;; (*ITAG) Solyc09g072880.2.1 (e_value=4e-143) genomic_reference:SL2.40ch09 gene_region:61055489-61061294 transcript_region:SL2.40ch09:61055489..61061294+ go_terms:GO:0005488 functional_description:"Chloroplast FLU-like protein (Fragment) (AHRD V1 *--- D2K2R8_PICAB); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009319g0010.1 protein AED:0.00 eAED:0.00 QI:147|1|1|1|1|1|4|252|140; (*GB) gi|224065549|ref|XP_002301852.1| (e_value=6e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|P49690|RL23_ARATH (e_value=3e-97) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=2e-98) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=1e-99) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00009319g0014.1 protein AED:0.19 eAED:0.19 QI:49|1|0.75|1|1|0.87|8|0|831; (*GB) gi|359480051|ref|XP_002270320.2| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera];; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=3e-144) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2;; (*TAIR) AT3G04380.1 (e_value=2e-145) | Symbols: SUVR4, SDG31 | SET-domain containing protein lysine methyltransferase family protein | chr3:1161602-1164539 FORWARD LENGTH=492;; (*ITAG) Solyc09g072890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61075116-61081203 transcript_region:SL2.40ch09:61075116..61081203- go_terms:GO:0005634 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- B0XIT7_CULQU); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00034627g0001.1 protein AED:0.37 eAED:0.39 QI:0|0.5|0|1|1|1|3|0|67; (*GB) gi|225432095|ref|XP_002274816.1| (e_value=1e-15) PREDICTED: 1-Cys peroxiredoxin A [Vitis vinifera];; (*SWP) sp|P52572|REHY_HORVU (e_value=1e-21) 1-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER1 PE=2 SV=1;; (*TAIR) AT1G48130.1 (e_value=6e-22) | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780610-17781500 FORWARD LENGTH=216;; (*ITAG) Solyc03g096040.2.1 (e_value=2e-30) genomic_reference:SL2.40ch03 gene_region:51304230-51305908 transcript_region:SL2.40ch03:51304230..51305908+ go_terms:GO:0008379,GO:0004602 functional_description:"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity (AHRD V1 **** C4QX37_PICPG); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379,GO:0004602 NbS00020385g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0|0|3|0|368; (*GB) gi|224085469|ref|XP_002307585.1| (e_value=1e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=4e-12) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G63200.1 (e_value=4e-155) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00020385g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.6|1|1|1|5|148|397; (*GB) gi|296085199|emb|CBI28694.3| (e_value=1e-104) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G63170.1 (e_value=2e-85) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc06g084260.2.1 (e_value=4e-154) genomic_reference:SL2.40ch06 gene_region:45747996-45753145 transcript_region:SL2.40ch06:45747996..45753145+ go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- B6TFR7_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00048868g0013.1 protein AED:0.11 eAED:0.11 QI:198|0.6|0.5|1|0.8|0.83|6|0|302; (*GB) gi|255564848|ref|XP_002523418.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G13510.1 (e_value=1e-179) | Symbols: | Protein of Unknown Function (DUF239) | chr3:4403776-4405741 FORWARD LENGTH=419;; (*ITAG) Solyc01g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:382300-385329 transcript_region:SL2.40ch01:382300..385329+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00048868g0010.1 protein AED:0.13 eAED:0.13 QI:74|0.87|0.94|0.94|0.68|0.76|17|215|560; (*GB) gi|225466255|ref|XP_002268353.1| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase 1-like [Vitis vinifera];; (*SWP) sp|Q9D0L4|ADCK1_MOUSE (e_value=1e-86) Uncharacterized aarF domain-containing protein kinase 1 OS=Mus musculus GN=Adck1 PE=2 SV=1;; (*TAIR) AT1G65950.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:24546860-24551119 REVERSE LENGTH=551;; (*ITAG) Solyc04g008300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1981218-1982819 transcript_region:SL2.40ch04:1981218..1982819+ go_terms:GO:0004672,GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-* ADCK1_MOUSE); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672,GO:0016709 NbS00024766g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|391; (*GB) gi|224099617|ref|XP_002311553.1| (e_value=4e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FRH3|CAP13_ARATH (e_value=9e-97) Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=2 SV=1;; (*TAIR) AT1G25240.1 (e_value=7e-98) | Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376;; (*ITAG) Solyc04g008350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2006028-2007209 transcript_region:SL2.40ch04:2006028..2007209- go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 **** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00024766g0001.1 protein AED:0.00 eAED:0.00 QI:69|1|0.5|1|0|0.5|2|0|282; (*GB) gi|319718163|gb|ADV59383.1| (e_value=0.0) GAGA-binding transcriptional activator [Nicotiana tabacum];; (*SWP) sp|Q9SKD0|BPC1_ARATH (e_value=7e-102) Protein BASIC PENTACYSTEINE1 OS=Arabidopsis thaliana GN=BPC1 PE=1 SV=1;; (*TAIR) AT2G01930.2 (e_value=6e-103) | Symbols: BPC1, BBR, ATBPC1 | basic pentacysteine1 | chr2:427358-428209 REVERSE LENGTH=283;; (*ITAG) Solyc04g008380.2.1 (e_value=2e-169) genomic_reference:SL2.40ch04 gene_region:2015697-2018738 transcript_region:SL2.40ch04:2015697..2018738- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- D7KCI3_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00030185g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.55|1|0.62|0.66|9|261|429; (*GB) gi|225423607|ref|XP_002274221.1| (e_value=0.0) PREDICTED: GTP-binding protein ERG-like [Vitis vinifera];; (*SWP) sp|O82626|ERG_ANTMA (e_value=5e-179) GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1;; (*TAIR) AT1G30960.1 (e_value=8e-171) | Symbols: | GTP-binding family protein | chr1:11037755-11039977 REVERSE LENGTH=437;; (*ITAG) Solyc02g081660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40107112-40113981 transcript_region:SL2.40ch02:40107112..40113981+ go_terms:GO:0003924 functional_description:"GTP-binding protein era homolog (AHRD V1 ***- D7AAD9_STAND); contains Interpro domain(s) IPR005662 GTP-binding protein Era "; GO:0003924 NbS00060236g0004.1 protein AED:0.22 eAED:0.22 QI:378|1|1|1|1|1|3|534|166; (*GB) gi|356505999|ref|XP_003521776.1| (e_value=2e-101) PREDICTED: serine/threonine-protein phosphatase PP1-like [Glycine max];; (*SWP) sp|P48489|PP1_ORYSJ (e_value=1e-86) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2;; (*TAIR) AT5G59160.3 (e_value=6e-86) | Symbols: TOPP2, PPO | type one serine/threonine protein phosphatase 2 | chr5:23879567-23881102 FORWARD LENGTH=312;; (*ITAG) Solyc05g055060.2.1 (e_value=3e-109) genomic_reference:SL2.40ch05 gene_region:63996131-64002035 transcript_region:SL2.40ch05:63996131..64002035- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9S7J9_RICCO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00029242g0003.1 protein AED:0.16 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|112; (*ITAG) Solyc08g068130.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54425119-54425589 transcript_region:SL2.40ch08:54425119..54425589- functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 **-- Q94IC5_9ROSI); contains Interpro domain(s) IPR004873 BURP "; NbS00029242g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.25|0|0.4|0.25|0.6|5|0|141; (*GB) gi|192910796|gb|ACF06506.1| (e_value=1e-56) RNA polymerase [Elaeis guineensis];; (*SWP) sp|Q923G2|RPAB3_MOUSE (e_value=7e-28) DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=2 SV=3;; (*TAIR) AT1G54250.1 (e_value=7e-49) | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymerase Rpb8 | chr1:20255210-20256335 FORWARD LENGTH=146;; (*ITAG) Solyc03g031690.2.1 (e_value=5e-70) genomic_reference:SL2.40ch03 gene_region:8431329-8435751 transcript_region:SL2.40ch03:8431329..8435751- go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 ***- B9EM78_SALSA); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515 NbS00021522g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|129 NbS00005546g0005.1 protein AED:0.06 eAED:0.08 QI:0|0.28|0.37|1|1|1|8|0|526; (*GB) gi|356494914|ref|XP_003516326.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-62) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G54100.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:20034451-20037874 REVERSE LENGTH=638;; (*ITAG) Solyc03g096370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51859166-51861779 transcript_region:SL2.40ch03:51859166..51861779+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00020668g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|106 NbS00025535g0010.1 protein AED:0.30 eAED:0.30 QI:66|0.9|0.72|1|0.9|1|11|0|553; (*GB) gi|535771|gb|AAA34069.1| (e_value=0.0) dehydroquinate dehydratase/shikimate dehydrogenase, partial [Nicotiana tabacum];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=0.0) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=0.0) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc01g067750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69081973-69096361 transcript_region:SL2.40ch01:69081973..69096361+ go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00025535g0006.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.75|1|1|1|4|0|224; (*GB) gi|345547465|gb|AEO12090.1| (e_value=1e-61) acyl carrier protein [Capsicum frutescens];; (*SWP) sp|P93092|ACP1_CASGL (e_value=1e-42) Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1;; (*TAIR) AT5G27200.1 (e_value=1e-31) | Symbols: ACP5 | acyl carrier protein 5 | chr5:9571185-9571989 FORWARD LENGTH=139;; (*ITAG) Solyc01g067730.2.1 (e_value=3e-63) genomic_reference:SL2.40ch01 gene_region:69065032-69067385 transcript_region:SL2.40ch01:69065032..69067385+ go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- Q9XF20_CAPCH); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00000803g0003.1 protein AED:0.17 eAED:0.18 QI:0|0.87|0.77|1|0.87|1|9|0|304; (*GB) gi|192764525|gb|ACF05806.1| (e_value=4e-80) PAE [Litchi chinensis];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=1e-17) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=1e-78) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g005790.2.1 (e_value=3e-172) genomic_reference:SL2.40ch08 gene_region:615659-619369 transcript_region:SL2.40ch08:615659..619369+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00000647g0011.1 protein AED:0.24 eAED:0.25 QI:0|0.28|0.25|1|0.42|0.5|8|0|747; (*GB) gi|359478489|ref|XP_002276395.2| (e_value=2e-99) PREDICTED: uncharacterized protein LOC100244907 [Vitis vinifera];; (*SWP) sp|Q9FLC6|ATL73_ARATH (e_value=1e-24) RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1;; (*TAIR) AT5G05280.1 (e_value=1e-25) | Symbols: | RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176;; (*ITAG) Solyc06g082510.2.1 (e_value=1e-174) genomic_reference:SL2.40ch06 gene_region:44587244-44590094 transcript_region:SL2.40ch06:44587244..44590094+ go_terms:GO:0003677,GO:0045449 functional_description:"Telomeric repeat-binding factor 1 (Fragment) (AHRD V1 *--- TERF1_CRIGR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00000647g0010.1 protein AED:0.17 eAED:0.17 QI:452|0.85|0.66|1|0.35|0.46|15|0|837; (*GB) gi|255565913|ref|XP_002523945.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q6Z3U3|Y7797_ORYSJ (e_value=0.0) B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1;; (*TAIR) AT2G30470.1 (e_value=0.0) | Symbols: HSI2, VAL1 | high-level expression of sugar-inducible gene 2 | chr2:12980904-12984724 REVERSE LENGTH=790;; (*ITAG) Solyc06g082520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44592516-44602333 transcript_region:SL2.40ch06:44592516..44602333- go_terms:GO:0005515,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0016564 NbS00031126g0009.1 protein AED:0.17 eAED:0.22 QI:0|0.5|0.33|1|1|1|3|0|535; (*GB) gi|225456443|ref|XP_002280705.1| (e_value=6e-142) PREDICTED: uncharacterized protein LOC100266395 [Vitis vinifera];; (*TAIR) AT3G26890.5 (e_value=5e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9907456-9910463 REVERSE LENGTH=649;; (*ITAG) Solyc03g097710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00014522g0012.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|660; (*GB) gi|225449681|ref|XP_002264924.1| (e_value=0.0) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|Q05999|KPK7_ARATH (e_value=2e-134) Serine/threonine-protein kinase AtPK7 OS=Arabidopsis thaliana GN=PK7 PE=2 SV=1;; (*TAIR) AT3G44610.1 (e_value=1e-156) | Symbols: | Protein kinase superfamily protein | chr3:16188266-16192107 REVERSE LENGTH=451;; (*ITAG) Solyc11g007250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1647832-1649734 transcript_region:SL2.40ch11:1647832..1649734- go_terms:GO:0006468 functional_description:"Protein kinase like protein (AHRD V1 ***- Q0WN21_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014522g0017.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.57|0.85|0.83|0.85|7|16|151; (*GB) gi|224113477|ref|XP_002316506.1| (e_value=4e-22) histidine phosphotransfer protein [Populus trichocarpa];; (*SWP) sp|Q6VAK4|HP1_ORYSJ (e_value=4e-13) Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1;; (*ITAG) Solyc11g007240.1.1 (e_value=8e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1641273-1643363 transcript_region:SL2.40ch11:1641273..1643363- go_terms:GO:0000160 functional_description:"Histidine phosphotransfer protein (AHRD V1 ***- B9IG70_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0000160 NbS00014522g0011.1 protein AED:0.32 eAED:0.32 QI:137|0.85|0.75|1|0.71|0.62|8|0|654; (*GB) gi|359486945|ref|XP_002264960.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248981 [Vitis vinifera];; (*TAIR) AT5G22510.1 (e_value=0.0) | Symbols: INV-E, At-A/N-InvE | alkaline/neutral invertase | chr5:7474974-7477479 REVERSE LENGTH=617;; (*ITAG) Solyc11g007270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1652454-1656955 transcript_region:SL2.40ch11:1652454..1656955- go_terms:GO:0003824 functional_description:"Neutral invertase (AHRD V1 ***- Q8L6W3_BETVU); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0003824 NbS00014522g0018.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|0.14|0.12|8|0|642; (*GB) gi|359481513|ref|XP_003632631.1| (e_value=1e-107) PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LFI1|PP280_ARATH (e_value=6e-100) Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1;; (*TAIR) AT3G53360.1 (e_value=4e-101) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19784502-19786808 FORWARD LENGTH=768;; (*ITAG) Solyc11g007230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1635762-1639958 transcript_region:SL2.40ch11:1635762..1639958+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUH3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000131g0001.1 protein AED:0.33 eAED:0.33 QI:158|1|1|1|1|1|2|235|224; (*GB) gi|3024505|sp|Q40522.1|RB11D_TOBAC (e_value=2e-152) RecName: Full=Ras-related protein Rab11D;; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=7e-154) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1;; (*TAIR) AT5G65270.1 (e_value=7e-141) | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226;; (*ITAG) Solyc11g010100.1.1 (e_value=5e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00003963g0105.1 protein AED:0.23 eAED:0.23 QI:79|0.75|0.8|1|0.5|0.2|5|385|377 NbS00024135g0003.1 protein AED:0.21 eAED:0.24 QI:0|1|0.66|1|1|1|3|170|353; (*GB) gi|2826769|emb|CAA67119.1| (e_value=9e-173) ACC oxidase [Nicotiana tabacum];; (*SWP) sp|Q43792|ACCO_TOBAC (e_value=4e-173) 1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1;; (*TAIR) AT1G05010.1 (e_value=5e-136) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc07g049530.2.1 (e_value=7e-170) genomic_reference:SL2.40ch07 gene_region:57154220-57156391 transcript_region:SL2.40ch07:57154220..57156391+ go_terms:GO:0005507 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q94F66_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0005507 NbS00032176g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.83|0.71|1|0.66|0.57|7|1796|704; (*GB) gi|359476537|ref|XP_002268782.2| (e_value=1e-122) PREDICTED: uncharacterized protein LOC100263926 [Vitis vinifera];; (*TAIR) AT3G04160.1 (e_value=9e-77) | Symbols: | unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). | chr3:1091647-1094296 REVERSE LENGTH=712;; (*ITAG) Solyc04g050760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:47393040-47398788 transcript_region:SL2.40ch04:47393040..47398788+ functional_description:"U11/U12 small nuclear ribonucleoprotein 48 kDa protein (AHRD V1 *-*- SNR48_HUMAN)"; NbS00056586g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|330318635|gb|AEC10979.1| (e_value=5e-114) dimethylmenaquinone methyltransferase [Camellia sinensis];; (*SWP) sp|Q9FFE0|RRAA2_ARATH (e_value=5e-105) Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1;; (*TAIR) AT5G16450.2 (e_value=4e-106) | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:5374357-5375342 FORWARD LENGTH=166;; (*ITAG) Solyc04g008280.2.1 (e_value=6e-120) genomic_reference:SL2.40ch04 gene_region:1954623-1957620 transcript_region:SL2.40ch04:1954623..1957620+ go_terms:GO:0008757 functional_description:"Regulator of ribonuclease activity A (AHRD V1 ***- B6T0A4_MAIZE); contains Interpro domain(s) IPR010203 Ribonuclease E inhibitor RraA "; GO:0008757 NbS00024617g0001.1 protein AED:0.00 eAED:0.05 QI:0|1|0.5|1|0|0|2|224|115; (*ITAG) Solyc06g076790.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:44091817-44092137 transcript_region:SL2.40ch06:44091817..44092137- functional_description:"Unknown Protein (AHRD V1)"; NbS00039504g0004.1 protein AED:0.06 eAED:0.07 QI:0|1|0.83|1|0.8|0.83|6|598|421; (*GB) gi|297746360|emb|CBI16416.3| (e_value=4e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66GR3|BH130_ARATH (e_value=3e-39) Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1;; (*TAIR) AT2G42280.1 (e_value=2e-40) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359;; (*ITAG) Solyc11g056650.1.1 (e_value=3e-163) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:45024809-45027346 transcript_region:SL2.40ch11:45024809..45027346- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00040786g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|224117554|ref|XP_002331665.1| (e_value=5e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57685.1 (e_value=1e-15) | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 | chr5:23366356-23366802 REVERSE LENGTH=148;; (*ITAG) Solyc07g006600.1.1 (e_value=4e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1448338-1448895 transcript_region:SL2.40ch07:1448338..1448895+ functional_description:"GDU1 (AHRD V1 *-*- B6TNE4_MAIZE)"; NbS00021786g0011.1 protein AED:0.10 eAED:0.10 QI:262|1|1|1|1|1|6|423|397; (*GB) gi|147768303|emb|CAN64754.1| (e_value=0.0) hypothetical protein VITISV_010542 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=9e-64) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50000.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:20342838-20345033 REVERSE LENGTH=385;; (*ITAG) Solyc06g071410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40320383-40324461 transcript_region:SL2.40ch06:40320383..40324461- go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00021786g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|74; (*GB) gi|282935440|gb|ADB03785.1| (e_value=4e-20) deleted in split hand/splt foot protein 1 [Ipomoea batatas];; (*ITAG) Solyc06g071390.2.1 (e_value=1e-13) genomic_reference:SL2.40ch06 gene_region:40316646-40318381 transcript_region:SL2.40ch06:40316646..40318381+ functional_description:"Deleted in split hand/splt foot protein 1 (Fragment) (AHRD V1 ***- Q70ET7_SOLLC); contains Interpro domain(s) IPR007834 DSS1/SEM1 "; NbS00021786g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.25|0.75|1|1|4|0|130; (*GB) gi|37050896|emb|CAE47557.1| (e_value=3e-65) seven-transmembrane-domain protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9FM10|SWET5_ARATH (e_value=3e-52) Bidirectional sugar transporter SWEET5 OS=Arabidopsis thaliana GN=SWEET5 PE=2 SV=2;; (*TAIR) AT5G62850.1 (e_value=3e-53) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc06g071400.2.1 (e_value=5e-68) genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00005517g0008.1 protein AED:0.15 eAED:0.15 QI:217|0.89|0.86|1|0.79|0.73|30|0|2043; (*GB) gi|225436245|ref|XP_002275285.1| (e_value=0.0) PREDICTED: TATA-binding protein-associated factor 172 isoform 1 [Vitis vinifera];; (*SWP) sp|O14981|BTAF1_HUMAN (e_value=0.0) TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2;; (*TAIR) AT3G54280.1 (e_value=0.0) | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20103807 FORWARD LENGTH=2045;; (*ITAG) Solyc08g074500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55766335-55779927 transcript_region:SL2.40ch08:55766335..55779927- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00005517g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|381; (*GB) gi|224111368|ref|XP_002315829.1| (e_value=2e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C042|Y4597_ARATH (e_value=8e-97) Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1;; (*TAIR) AT1G14590.1 (e_value=3e-128) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:4998957-5000617 REVERSE LENGTH=386;; (*ITAG) Solyc08g074490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55758803-55765932 transcript_region:SL2.40ch08:55758803..55765932+ functional_description:"Regulatory protein (AHRD V1 **-- Q8LFS2_ARATH)"; NbS00005517g0110.1 protein AED:0.11 eAED:0.11 QI:192|0.83|0.71|0.85|0.66|0.71|7|0|211 NbS00005517g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|131 NbS00017975g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|1|1|4|0|551; (*GB) gi|60101707|gb|AAX13972.1| (e_value=0.0) pectin methylesterase [Nicotiana tabacum];; (*SWP) sp|Q8GX86|PME21_ARATH (e_value=5e-173) Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2;; (*TAIR) AT3G05610.1 (e_value=4e-174) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669;; (*ITAG) Solyc12g099410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64908214-64911852 transcript_region:SL2.40ch12:64908214..64911852+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q4G2Z0_TOBAC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00017975g0011.1 protein AED:0.10 eAED:0.10 QI:160|1|1|1|0.8|0.90|11|290|684; (*GB) gi|255551827|ref|XP_002516959.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q28GV1|CNDH2_XENTR (e_value=3e-18) Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2 SV=1;; (*TAIR) AT3G16730.1 (e_value=6e-161) | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695633-5698863 REVERSE LENGTH=683;; (*ITAG) Solyc12g099420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00017975g0016.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0.2|1|0|0|5|137|223; (*GB) gi|356564247|ref|XP_003550367.1| (e_value=8e-93) PREDICTED: epoxide hydrolase 2-like [Glycine max];; (*TAIR) AT4G02340.1 (e_value=8e-84) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc12g099430.1.1 (e_value=1e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64925085-64928377 transcript_region:SL2.40ch12:64925085..64928377+ go_terms:GO:0003824 functional_description:"Epoxide hydrolase 1 (AHRD V1 ***- D8L7V7_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00017975g0015.1 protein AED:0.24 eAED:0.24 QI:157|1|1|1|0.94|0.94|18|460|725; (*GB) gi|171854673|dbj|BAG16526.1| (e_value=0.0) putative glyoxysomal fatty acid beta-oxidation multifunctional protein [Capsicum chinense];; (*SWP) sp|Q39659|MFPA_CUCSA (e_value=0.0) Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1;; (*TAIR) AT3G06860.1 (e_value=0.0) | Symbols: MFP2, ATMFP2 | multifunctional protein 2 | chr3:2161926-2166009 FORWARD LENGTH=725;; (*ITAG) Solyc12g099440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64931946-64939624 transcript_region:SL2.40ch12:64931946..64939624+ go_terms:GO:0050662,GO:0008152,GO:0006631,GO:0016491 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0050662,GO:0008152,GO:0006631,GO:0016491 NbS00017975g0014.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|202; (*GB) gi|224107110|ref|XP_002314378.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G49100.1 (e_value=1e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G06868.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19897700-19898890 REVERSE LENGTH=396;; (*ITAG) Solyc12g099450.1.1 (e_value=3e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64942526-64944096 transcript_region:SL2.40ch12:64942526..64944096+ functional_description:"Genomic DNA chromosome 5 TAC clone K20J1 (AHRD V1 *-*- Q9FH24_ARATH)"; NbS00017975g0013.1 protein AED:0.36 eAED:0.57 QI:0|0|0|1|0|0|3|0|114 NbS00056240g0001.1 protein AED:0.05 eAED:0.05 QI:223|0.75|0.6|1|1|1|5|0|290; (*GB) gi|225432181|ref|XP_002268657.1| (e_value=3e-161) PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=1e-145) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=7e-147) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00056240g0003.1 protein AED:0.02 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|147775996|emb|CAN69081.1| (e_value=8e-49) hypothetical protein VITISV_014064 [Vitis vinifera];; (*TAIR) AT1G15760.1 (e_value=9e-36) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=202;; (*ITAG) Solyc03g117310.1.1 (e_value=2e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60531877-60532509 transcript_region:SL2.40ch03:60531877..60532509- functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00017687g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|1|0.75|4|245|407; (*GB) gi|224069820|ref|XP_002326422.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=0.0) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT5G01020.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:6309-8270 REVERSE LENGTH=410;; (*ITAG) Solyc10g074710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57651885-57654898 transcript_region:SL2.40ch10:57651885..57654898+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00022914g0010.1 protein AED:0.13 eAED:0.13 QI:37|0.66|0.75|1|0.66|0.75|4|0|144; (*GB) gi|224138984|ref|XP_002326739.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17760.1 (e_value=4e-80) | Symbols: | damaged DNA binding;exodeoxyribonuclease IIIs | chr4:9871820-9873257 FORWARD LENGTH=300;; (*ITAG) Solyc08g076610.2.1 (e_value=3e-90) genomic_reference:SL2.40ch08 gene_region:57719460-57723603 transcript_region:SL2.40ch08:57719460..57723603+ go_terms:GO:0005634 functional_description:"Cell cycle checkpoint protein RAD1 (AHRD V1 **-- C1BZ21_ESOLU); contains Interpro domain(s) IPR003021 Repair protein Rad1/Rec1 "; GO:0005634 NbS00022914g0011.1 protein AED:0.30 eAED:0.66 QI:0|1|0.33|1|1|0.33|3|0|141; (*GB) gi|297742066|emb|CBI33853.3| (e_value=4e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G17760.1 (e_value=3e-73) | Symbols: | damaged DNA binding;exodeoxyribonuclease IIIs | chr4:9871820-9873257 FORWARD LENGTH=300;; (*ITAG) Solyc08g076610.2.1 (e_value=3e-97) genomic_reference:SL2.40ch08 gene_region:57719460-57723603 transcript_region:SL2.40ch08:57719460..57723603+ go_terms:GO:0005634 functional_description:"Cell cycle checkpoint protein RAD1 (AHRD V1 **-- C1BZ21_ESOLU); contains Interpro domain(s) IPR003021 Repair protein Rad1/Rec1 "; GO:0005634 NbS00022914g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|87 NbS00020556g0027.1 protein AED:0.42 eAED:0.57 QI:0|0|0|1|0|0.5|2|0|153; (*GB) gi|57013932|ref|YP_173405.1| (e_value=4e-67) hypothetical protein NitaMp061 [Nicotiana tabacum]; NbS00020556g0015.1 protein AED:0.63 eAED:0.79 QI:0|0|0|0.5|1|1|4|0|137; (*ITAG) Solyc08g045860.1.1 (e_value=9e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37104750-37105211 transcript_region:SL2.40ch08:37104750..37105211- functional_description:"Unknown Protein (AHRD V1)"; NbS00020556g0028.1 protein AED:0.57 eAED:0.84 QI:0|0|0|0.8|0.25|0.4|5|0|222 NbS00020556g0019.1 protein AED:0.68 eAED:0.89 QI:0|0|0|0.37|1|1|8|0|148 NbS00020556g0003.1 protein AED:0.36 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|57014023|ref|YP_173494.1| (e_value=3e-51) hypothetical protein NitaMp157 [Nicotiana tabacum]; NbS00020556g0025.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|3|0|241; (*GB) gi|57013986|ref|YP_173458.1| (e_value=6e-72) hypothetical protein NitaMp120 [Nicotiana tabacum];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=3e-55) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=3e-51) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc11g039980.1.1 (e_value=6e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00020556g0038.1 protein AED:0.40 eAED:0.56 QI:0|0|0|0.66|0|0.33|3|0|148; (*ITAG) Solyc08g061120.1.1 (e_value=3e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:43919654-43921705 transcript_region:SL2.40ch08:43919654..43921705+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020556g0035.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.2|0.75|0.8|5|0|146 NbS00020556g0029.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|5|0|311; (*GB) gi|57013924|ref|YP_173397.1| (e_value=5e-57) hypothetical protein NitaMp051 [Nicotiana tabacum];; (*SWP) sp|P08743|COX1_OENBE (e_value=4e-34) Cytochrome c oxidase subunit 1 OS=Oenothera berteriana GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=4e-33) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc07g019510.2.1 (e_value=6e-34) genomic_reference:SL2.40ch07 gene_region:11854353-11856013 transcript_region:SL2.40ch07:11854353..11856013- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00020556g0033.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|3|0|207; (*GB) gi|308055005|gb|ADO01549.1| (e_value=8e-67) cytochrome oxidase subunit I [Astragalus membranaceus];; (*SWP) sp|P07506|COX1_SOYBN (e_value=5e-67) Cytochrome c oxidase subunit 1 OS=Glycine max GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=2e-65) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00020556g0030.1 protein AED:0.54 eAED:0.70 QI:0|0|0|1|0|0|2|0|115; (*GB) gi|18076118|emb|CAC80468.1| (e_value=7e-30) cytochrome oxidase subunit I [Scrophularia nodosa];; (*SWP) sp|P24794|COX1_BETVU (e_value=4e-30) Cytochrome c oxidase subunit 1 OS=Beta vulgaris GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=1e-30) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00020556g0031.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|78; (*GB) gi|187962365|gb|ACD44510.1| (e_value=5e-30) cytochrome oxidase subunit 1, partial (mitochondrion) [Solanum dulcamara];; (*SWP) sp|P14578|COX1_ORYSJ (e_value=5e-28) Cytochrome c oxidase subunit 1 OS=Oryza sativa subsp. japonica GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=6e-29) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=5e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00020556g0032.1 protein AED:0.47 eAED:0.77 QI:0|0|0|1|0|0|2|0|61 NbS00050714g0001.1 protein AED:0.33 eAED:0.34 QI:370|0|0.5|1|0|0.5|2|0|136; (*GB) gi|225441405|ref|XP_002278550.1| (e_value=5e-36) PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera];; (*TAIR) AT3G57930.2 (e_value=3e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g078710.1.1 (e_value=2e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59763165-59763572 transcript_region:SL2.40ch10:59763165..59763572- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; NbS00019586g0004.1 protein AED:0.25 eAED:0.25 QI:267|1|1|1|1|1|9|244|371; (*GB) gi|225427218|ref|XP_002280448.1| (e_value=5e-175) PREDICTED: uncharacterized protein LOC100247252 [Vitis vinifera];; (*TAIR) AT4G17840.1 (e_value=6e-152) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9918222-9920190 REVERSE LENGTH=422;; (*ITAG) Solyc08g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:12370-18668 transcript_region:SL2.40ch08:12370..18668- functional_description:"Unknown Protein (AHRD V1)"; NbS00054373g0001.1 protein AED:0.40 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|224057098|ref|XP_002299126.1| (e_value=9e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19860.1 (e_value=2e-48) | Symbols: | Protein of unknown function, DUF538 | chr5:6714533-6715837 REVERSE LENGTH=181;; (*ITAG) Solyc01g021670.2.1 (e_value=9e-71) genomic_reference:SL2.40ch01 gene_region:32538796-32541485 transcript_region:SL2.40ch01:32538796..32541485+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00054373g0002.1 protein AED:0.33 eAED:0.40 QI:0|0|0|1|1|1|3|0|379; (*GB) gi|255572244|ref|XP_002527061.1| (e_value=0.0) Protein AFR, putative [Ricinus communis];; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=0.0) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g022740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:32850498-32855494 transcript_region:SL2.40ch01:32850498..32855494- functional_description:"Kelch-like protein 21 (AHRD V1 *-*- KLH21_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00046332g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.85|0.87|1|0.42|0.62|8|409|254; (*GB) gi|296086777|emb|CBI32926.3| (e_value=5e-115) unnamed protein product [Vitis vinifera];; (*SWP) sp|A5DQJ8|SIP5_PICGU (e_value=1e-12) Protein SIP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SIP5 PE=3 SV=2;; (*TAIR) AT1G78420.2 (e_value=6e-108) | Symbols: | RING/U-box superfamily protein | chr1:29505278-29507272 FORWARD LENGTH=401;; (*ITAG) Solyc07g056630.2.1 (e_value=6e-139) genomic_reference:SL2.40ch07 gene_region:61765246-61772442 transcript_region:SL2.40ch07:61765246..61772442+ go_terms:GO:0005524,GO:0008270 functional_description:"Protein sip5 (AHRD V1 *--- C8VM34_EMENI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005524,GO:0008270 NbS00047421g0002.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.2|0.6|0.75|0.6|5|0|161; (*GB) gi|359484002|ref|XP_002272177.2| (e_value=4e-52) PREDICTED: vacuolar protein sorting-associated protein 54-like [Vitis vinifera];; (*TAIR) AT4G19490.2 (e_value=2e-43) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034;; (*ITAG) Solyc02g030110.2.1 (e_value=1e-73) genomic_reference:SL2.40ch02 gene_region:15823759-15852111 transcript_region:SL2.40ch02:15823759..15852111+ go_terms:GO:0042147 functional_description:"Vacuolar protein sorting 54 family protein (AHRD V1 *-*- D3BE08_POLPA); contains Interpro domain(s) IPR012501 Vps54-like "; GO:0042147 NbS00015224g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.86|0.75|0.87|0.86|0.81|16|0|670; (*GB) gi|356515685|ref|XP_003526529.1| (e_value=0.0) PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=6e-35) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09890.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617;; (*ITAG) Solyc04g076630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59122018-59128055 transcript_region:SL2.40ch04:59122018..59128055- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00015224g0013.1 protein AED:0.20 eAED:0.28 QI:0|0.16|0.15|0.92|0.33|0.30|13|0|629; (*GB) gi|359492972|ref|XP_002285626.2| (e_value=1e-167) PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera];; (*TAIR) AT1G09890.1 (e_value=5e-159) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617;; (*ITAG) Solyc04g076640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59132414-59136709 transcript_region:SL2.40ch04:59132414..59136709- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00015224g0103.1 protein AED:0.15 eAED:0.16 QI:0|0.87|0.88|1|0.81|0.82|17|389|610 NbS00001929g0019.1 protein AED:0.03 eAED:0.05 QI:0|0.33|0|0.75|0.33|0|4|0|799; (*GB) gi|224075052|ref|XP_002304537.1| (e_value=0.0) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=0.0) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.1 (e_value=0.0) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16641146 REVERSE LENGTH=810;; (*ITAG) Solyc08g008190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2654348-2657240 transcript_region:SL2.40ch08:2654348..2657240- go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00001929g0018.1 protein AED:0.08 eAED:0.08 QI:156|0.83|0.71|1|0.83|0.71|7|468|250; (*GB) gi|9652289|gb|AAF91469.1| (e_value=5e-149) putative vacuolar proton ATPase subunit E [Solanum lycopersicum];; (*SWP) sp|Q9SWE7|VATE_CITLI (e_value=6e-131) V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1;; (*TAIR) AT1G64200.1 (e_value=2e-125) | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E isoform 3 | chr1:23828537-23830002 REVERSE LENGTH=237;; (*ITAG) Solyc08g008210.2.1 (e_value=5e-156) genomic_reference:SL2.40ch08 gene_region:2662300-2667303 transcript_region:SL2.40ch08:2662300..2667303- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00001929g0020.1 protein AED:0.28 eAED:0.28 QI:0|0.71|0.75|0.87|0.85|0.87|8|0|485; (*GB) gi|198250370|gb|ACH85192.1| (e_value=0.0) calcium-dependent protein kinase CDPK5 [Nicotiana tabacum];; (*SWP) sp|Q42479|CDPK3_ARATH (e_value=0.0) Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1;; (*TAIR) AT4G23650.1 (e_value=0.0) | Symbols: CDPK6, CPK3 | calcium-dependent protein kinase 6 | chr4:12324967-12327415 REVERSE LENGTH=529;; (*ITAG) Solyc08g008170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2637882-2642478 transcript_region:SL2.40ch08:2637882..2642478- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 3 (AHRD V1 **** B9GKB5_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00001929g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|225426090|ref|XP_002276602.1| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100255255 [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=2e-56) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT1G64140.1 (e_value=2e-100) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646;; (*ITAG) Solyc08g081760.1.1 (e_value=2e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61891120-61893165 transcript_region:SL2.40ch08:61891120..61893165- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00001929g0001.1 protein AED:0.34 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|349; (*GB) gi|225426090|ref|XP_002276602.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100255255 [Vitis vinifera];; (*ITAG) Solyc08g008180.1.1 (e_value=4e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2645181-2647172 transcript_region:SL2.40ch08:2645181..2647172- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00001929g0017.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|0|0|2|0|54; (*GB) gi|238478961|ref|NP_001154446.1| (e_value=6e-26) ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana];; (*SWP) sp|Q8S919|UBC5B_ORYSJ (e_value=2e-26) Ubiquitin-conjugating enzyme E2 5B OS=Oryza sativa subsp. japonica GN=UBC5B PE=2 SV=1;; (*TAIR) AT1G64230.5 (e_value=1e-28) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=190;; (*ITAG) Solyc08g008220.2.1 (e_value=2e-27) genomic_reference:SL2.40ch08 gene_region:2668832-2672512 transcript_region:SL2.40ch08:2668832..2672512+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00025308g0010.1 protein AED:0.35 eAED:0.35 QI:0|0|0.5|0.5|0|0.5|2|0|72 NbS00025308g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|225455914|ref|XP_002276499.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100255921 [Vitis vinifera];; (*TAIR) AT1G13360.1 (e_value=6e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc03g119610.1.1 (e_value=3e-100) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:62238590-62239321 transcript_region:SL2.40ch03:62238590..62239321+ functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 ***- Q9LUA5_ARATH)"; NbS00025308g0007.1 protein AED:0.35 eAED:0.40 QI:0|1|0.33|1|1|1|3|0|195; (*GB) gi|224113377|ref|XP_002332597.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73890.1 (e_value=2e-29) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:27787903-27788658 REVERSE LENGTH=193;; (*ITAG) Solyc03g119620.1.1 (e_value=9e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62243187-62244058 transcript_region:SL2.40ch03:62243187..62244058- go_terms:GO:0008289 functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-** D8QRT0_SELML); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00051462g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.45|0.90|0.8|0.72|11|0|592; (*GB) gi|350536773|ref|NP_001234008.1| (e_value=5e-141) copalyl diphosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q38802|KSA_ARATH (e_value=2e-107) Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1;; (*TAIR) AT4G02780.1 (e_value=2e-108) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802;; (*ITAG) Solyc06g084240.1.1 (e_value=1e-143) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:45708352-45713252 transcript_region:SL2.40ch06:45708352..45713252- go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U3_ORYRU); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00022419g0004.1 protein AED:0.40 eAED:0.40 QI:25|1|1|1|1|1|2|47|50; (*GB) gi|350537477|ref|NP_001234295.1| (e_value=1e-15) transcription factor IIIA [Solanum lycopersicum];; (*ITAG) Solyc10g077110.1.1 (e_value=2e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00009629g0005.1 protein AED:0.09 eAED:0.09 QI:140|0.88|0.96|0.96|0.92|0.92|26|546|986; (*GB) gi|225438527|ref|XP_002279361.1| (e_value=0.0) PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera];; (*SWP) sp|Q9XIK4|U202A_ARATH (e_value=0.0) UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2;; (*TAIR) AT1G10490.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00009629g0013.1 protein AED:0.10 eAED:0.10 QI:258|1|1|1|1|1|4|603|348; (*GB) gi|255578809|ref|XP_002530261.1| (e_value=3e-126) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G39470.1 (e_value=5e-102) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18359735-18361165 REVERSE LENGTH=341;; (*ITAG) Solyc04g051660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50096129-50100522 transcript_region:SL2.40ch04:50096129..50100522- go_terms:GO:0005488 functional_description:"TPR repeat (AHRD V1 *-*- Q31KV9_SYNE7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009629g0014.1 protein AED:0.40 eAED:0.45 QI:0|1|0.5|1|1|1|4|0|173; (*GB) gi|1370182|emb|CAA98168.1| (e_value=2e-74) RAB7A [Lotus japonicus];; (*SWP) sp|Q43463|RAB7_SOYBN (e_value=4e-75) Ras-related protein Rab7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G22740.1 (e_value=1e-71) | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPase homolog G3B | chr1:8049247-8050494 FORWARD LENGTH=203;; (*ITAG) Solyc04g051680.2.1 (e_value=2e-94) genomic_reference:SL2.40ch04 gene_region:50130142-50133500 transcript_region:SL2.40ch04:50130142..50133500- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00044828g0004.1 protein AED:0.24 eAED:0.26 QI:29|0.75|0.66|1|0.87|0.77|9|0|512; (*GB) gi|296086557|emb|CBI32146.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q74E53|RLMN_GEOSL (e_value=2e-87) Ribosomal RNA large subunit methyltransferase N OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rlmN PE=3 SV=1;; (*TAIR) AT1G60230.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr1:22212223-22214346 REVERSE LENGTH=458;; (*ITAG) Solyc05g005590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:419694-425339 transcript_region:SL2.40ch05:419694..425339+ go_terms:GO:0003824 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- C6E0H5_GEOSM); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "; GO:0003824 NbS00020478g0005.1 protein AED:0.63 eAED:0.63 QI:51|0|0.33|0.33|1|1|3|0|72; (*GB) gi|224107763|ref|XP_002333467.1| (e_value=4e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g006870.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:1430746-1436275 transcript_region:SL2.40ch01:1430746..1436275- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00006660g0001.1 protein AED:0.27 eAED:0.38 QI:0|0|0|1|1|1|2|0|144 NbS00028227g0005.1 protein AED:0.06 eAED:0.06 QI:106|0.82|0.83|1|0.82|0.83|18|218|838; (*GB) gi|297736949|emb|CBI26150.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42910|PPDK_MESCR (e_value=0.0) Pyruvate, phosphate dikinase, chloroplastic OS=Mesembryanthemum crystallinum GN=PPD PE=2 SV=1;; (*TAIR) AT4G15530.6 (e_value=0.0) | Symbols: PPDK | pyruvate orthophosphate dikinase | chr4:8864828-8870748 REVERSE LENGTH=963;; (*ITAG) Solyc01g080460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72206073-72214485 transcript_region:SL2.40ch01:72206073..72214485+ go_terms:GO:0050242,GO:0016310,GO:0005524,GO:0003824 functional_description:"Pyruvate phosphate dikinase (AHRD V1 ***- Q84N32_SORBI); contains Interpro domain(s) IPR010121 Pyruvate, phosphate dikinase "; GO:0050242,GO:0016310,GO:0005524,GO:0003824 NbS00014148g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.6|1|0.25|0.4|5|851|205; (*GB) gi|44917147|dbj|BAD12174.1| (e_value=5e-136) 14-3-3 d-2 protein [Nicotiana tabacum];; (*SWP) sp|O49996|1433D_TOBAC (e_value=9e-137) 14-3-3-like protein D OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G65430.1 (e_value=6e-117) | Symbols: GRF8, 14-3-3KAPPA, GF14 KAPPA | general regulatory factor 8 | chr5:26148546-26150255 REVERSE LENGTH=248;; (*ITAG) Solyc11g010470.1.1 (e_value=8e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3533525-3537417 transcript_region:SL2.40ch11:3533525..3537417- go_terms:GO:0019904 functional_description:"14-3-3 protein beta/alpha (AHRD V1 **-- 1433B_XENTR); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0019904 NbS00023544g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|542; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=0.0) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9M0M5|SCL13_ARATH (e_value=0.0) Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2;; (*TAIR) AT4G17230.1 (e_value=0.0) | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529;; (*ITAG) Solyc11g012510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5329768-5331396 transcript_region:SL2.40ch11:5329768..5331396- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00023544g0003.1 protein AED:0.61 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|73 NbS00037832g0001.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|472; (*GB) gi|356538508|ref|XP_003537745.1| (e_value=0.0) PREDICTED: scarecrow-like protein 3-like [Glycine max];; (*SWP) sp|Q9LPR8|SCL3_ARATH (e_value=0.0) Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1;; (*TAIR) AT1G50420.1 (e_value=0.0) | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482;; (*ITAG) Solyc12g099900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65187350-65188756 transcript_region:SL2.40ch12:65187350..65188756+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B9NHP2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00040500g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.66|1|0.5|0.66|3|302|271; (*GB) gi|225450829|ref|XP_002279749.1| (e_value=2e-123) PREDICTED: uncharacterized protein LOC100244224 [Vitis vinifera];; (*TAIR) AT3G05410.2 (e_value=3e-110) | Symbols: | Photosystem II reaction center PsbP family protein | chr3:1554783-1561456 FORWARD LENGTH=280;; (*ITAG) Solyc11g008480.1.1 (e_value=4e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2664759-2666235 transcript_region:SL2.40ch11:2664759..2666235+ functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 *-*- A0ZMM6_NODSP); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; NbS00040500g0001.1 protein AED:0.30 eAED:0.30 QI:109|0.75|0.8|1|0.75|0.8|5|287|181; (*GB) gi|81074037|gb|ABB55361.1| (e_value=2e-71) 40S ribosomal protein S10-like [Solanum tuberosum];; (*SWP) sp|Q9SW09|RS101_ARATH (e_value=1e-64) 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1;; (*TAIR) AT4G25740.1 (e_value=1e-65) | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr4:13107488-13108751 REVERSE LENGTH=177;; (*ITAG) Solyc12g096540.1.1 (e_value=3e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63756243-63758593 transcript_region:SL2.40ch12:63756243..63758593- functional_description:"40S ribosomal protein S10-like (AHRD V1 ***- Q2XPV4_SOLTU); contains Interpro domain(s) IPR005326 Plectin/S10, N-terminal "; NbS00009977g0003.1 protein AED:0.08 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|225428312|ref|XP_002282945.1| (e_value=0.0) PREDICTED: probable anion transporter 5 [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=0.0) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=0.0) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00009977g0012.1 protein AED:0.16 eAED:0.16 QI:673|0.6|0.72|1|0.7|0.81|11|0|806; (*GB) gi|225435510|ref|XP_002285548.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera];; (*TAIR) AT5G12950.1 (e_value=0.0) | Symbols: | Putative glycosyl hydrolase of unknown function (DUF1680) | chr5:4093117-4096806 FORWARD LENGTH=861;; (*ITAG) Solyc12g100120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65308503-65313592 transcript_region:SL2.40ch12:65308503..65313592+ functional_description:"Acetyl-CoA carboxylase-like protein (AHRD V1 *-*- Q8ABH3_BACTN); contains Interpro domain(s) IPR012878 Protein of unknown function DUF1680 "; NbS00009977g0002.1 protein AED:0.14 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|419; (*GB) gi|225428312|ref|XP_002282945.1| (e_value=0.0) PREDICTED: probable anion transporter 5 [Vitis vinifera];; (*SWP) sp|Q9FKV1|ANTR5_ARATH (e_value=0.0) Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1;; (*TAIR) AT5G44370.1 (e_value=0.0) | Symbols: PHT4;6 | phosphate transporter 4;6 | chr5:17875147-17876445 REVERSE LENGTH=432;; (*ITAG) Solyc12g100130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00033521g0005.1 protein AED:0.18 eAED:0.18 QI:237|1|1|1|1|1|4|692|125; (*GB) gi|386868006|dbj|BAM15272.1| (e_value=4e-78) glutaredoxin, partial [Solanum tuberosum];; (*SWP) sp|Q8L8T2|GRXC1_ARATH (e_value=3e-58) Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2;; (*TAIR) AT5G63030.1 (e_value=2e-59) | Symbols: | Thioredoxin superfamily protein | chr5:25286352-25287517 FORWARD LENGTH=125;; (*ITAG) Solyc03g112770.2.1 (e_value=5e-79) genomic_reference:SL2.40ch03 gene_region:57165498-57168926 transcript_region:SL2.40ch03:57165498..57168926+ go_terms:GO:0015038 functional_description:"Cytoplasmic glutaredoxin thioltransferase glutathione-dependent disulfide oxidoreductase (AHRD V1 **** C4R934_PICPG); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0015038 NbS00033521g0003.1 protein AED:0.16 eAED:0.16 QI:277|0|0.5|0.5|1|1|2|0|280; (*GB) gi|359491235|ref|XP_002282273.2| (e_value=3e-138) PREDICTED: uncharacterized protein LOC100250137 [Vitis vinifera];; (*TAIR) AT5G50290.1 (e_value=5e-125) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20461814-20463896 FORWARD LENGTH=303;; (*ITAG) Solyc03g112790.2.1 (e_value=2e-178) genomic_reference:SL2.40ch03 gene_region:57176091-57177710 transcript_region:SL2.40ch03:57176091..57177710- functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 ***- Q9FGR6_ARATH)"; NbS00027498g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|6|0|353; (*GB) gi|224072823|ref|XP_002303899.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQQ1|PPR20_ARATH (e_value=2e-57) Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1;; (*TAIR) AT1G07740.1 (e_value=2e-58) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2399117-2400496 REVERSE LENGTH=459;; (*ITAG) Solyc11g073230.1.1 (e_value=5e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027498g0008.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.33|1|1|3|0|81 NbS00027498g0009.1 protein AED:0.58 eAED:0.86 QI:0|0|0|0.6|0.5|0.6|5|0|258; (*ITAG) Solyc02g014130.1.1 (e_value=5e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:6347144-6359434 transcript_region:SL2.40ch02:6347144..6359434- go_terms:GO:0003700 functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--* C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; GO:0003700 NbS00060429g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.6|1|0.75|1|5|0|595; (*GB) gi|350536717|ref|NP_001234773.1| (e_value=5e-138) WRKY72-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=4e-60) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=3e-61) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc06g070990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39985716-39990128 transcript_region:SL2.40ch06:39985716..39990128- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00018982g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|462; (*GB) gi|225430672|ref|XP_002270882.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 9 [Vitis vinifera];; (*SWP) sp|Q9SRT0|PUB9_ARATH (e_value=9e-153) U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1;; (*TAIR) AT3G07360.1 (e_value=7e-154) | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354884-2356613 FORWARD LENGTH=460;; (*ITAG) Solyc04g050770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:47403375-47405122 transcript_region:SL2.40ch04:47403375..47405122+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00002312g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.6|1|0.5|0.4|5|0|275; (*GB) gi|388519161|gb|AFK47642.1| (e_value=2e-76) unknown [Lotus japonicus];; (*SWP) sp|Q99LX5|MMTA2_MOUSE (e_value=2e-23) Multiple myeloma tumor-associated protein 2 homolog OS=Mus musculus GN=Mmtag2 PE=2 SV=1;; (*TAIR) AT3G52220.1 (e_value=2e-70) | Symbols: | CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). | chr3:19369580-19370980 REVERSE LENGTH=237;; (*ITAG) Solyc11g006760.1.1 (e_value=3e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1352696-1356684 transcript_region:SL2.40ch11:1352696..1356684+ functional_description:"Multiple myeloma tumor-associated protein 2 homolog (AHRD V1 *-*- B5X3A7_SALSA); contains Interpro domain(s) IPR019315 Kinase phosphorylation domain "; NbS00002312g0008.1 protein AED:0.17 eAED:0.18 QI:0|1|1|1|1|1|5|288|209; (*GB) gi|359486986|ref|XP_002268158.2| (e_value=9e-135) PREDICTED: uncharacterized protein At2g38710 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZVJ2|AMERL_ARATH (e_value=1e-123) Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1;; (*TAIR) AT2G38710.2 (e_value=9e-125) | Symbols: | AMMECR1 family | chr2:16184517-16186764 REVERSE LENGTH=214;; (*ITAG) Solyc11g006770.1.1 (e_value=2e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1357490-1360773 transcript_region:SL2.40ch11:1357490..1360773+ go_terms:GO:0005515 functional_description:"AMMECR1 family (AHRD V1 **-- D7LBR0_ARALY); contains Interpro domain(s) IPR002733 AMMECR1 "; GO:0005515 NbS00026937g0003.1 protein AED:0.19 eAED:0.19 QI:608|1|0.66|1|0.5|1|3|0|346; (*GB) gi|225457745|ref|XP_002262900.1| (e_value=0.0) PREDICTED: uncharacterized protein C57A10.07 [Vitis vinifera];; (*SWP) sp|P87055|YDJ7_SCHPO (e_value=6e-60) Uncharacterized protein C57A10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC57A10.07 PE=2 SV=1;; (*TAIR) AT1G21370.2 (e_value=2e-163) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:7484250-7485451 FORWARD LENGTH=342;; (*ITAG) Solyc06g060460.2.1 (e_value=9e-157) genomic_reference:SL2.40ch06 gene_region:34870273-34874988 transcript_region:SL2.40ch06:34870273..34874988- functional_description:"DUF218 domain protein (AHRD V1 **-- Q4WYU5_ASPFU)"; NbS00001800g0011.1 protein AED:0.13 eAED:0.13 QI:109|0.66|0.57|1|0.66|0.85|7|305|369; (*GB) gi|225423911|ref|XP_002281867.1| (e_value=0.0) PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera];; (*SWP) sp|Q9C6M2|LHTL6_ARATH (e_value=4e-180) Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1;; (*TAIR) AT1G25530.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:8964827-8967391 REVERSE LENGTH=440;; (*ITAG) Solyc05g009700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3896183-3899785 transcript_region:SL2.40ch05:3896183..3899785- go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00001800g0013.1 protein AED:0.28 eAED:0.28 QI:97|0.25|0.6|1|0.5|0.6|5|486|114 NbS00001800g0014.1 protein AED:0.37 eAED:0.38 QI:0|0.94|0.89|1|0.72|0.78|19|175|525; (*GB) gi|1488652|emb|CAA62817.1| (e_value=0.0) fumarase [Solanum tuberosum];; (*SWP) sp|Q9FI53|FUM2_ARATH (e_value=0.0) Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1;; (*TAIR) AT5G50950.2 (e_value=0.0) | Symbols: FUM2 | FUMARASE 2 | chr5:20729687-20733636 FORWARD LENGTH=499;; (*ITAG) Solyc09g075450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62645088-62653706 transcript_region:SL2.40ch09:62645088..62653706- go_terms:GO:0005515 functional_description:"Fumarate hydratase class II (AHRD V1 ***- C5GAL1_AJEDR); contains Interpro domain(s) IPR005677 Fumarate hydratase, class II "; GO:0005515 NbS00001800g0016.1 protein AED:0.20 eAED:0.64 QI:0|1|0.33|1|1|1|3|0|335; (*GB) gi|225423909|ref|XP_002278845.1| (e_value=9e-73) PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera];; (*TAIR) AT1G25540.2 (e_value=2e-54) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE LENGTH=727;; (*ITAG) Solyc12g070100.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00008234g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|184; (*GB) gi|350539918|ref|NP_001234832.1| (e_value=1e-105) temperature-induced lipocalin' [Solanum lycopersicum];; (*SWP) sp|Q46036|BLC_CITFR (e_value=1e-20) Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1;; (*TAIR) AT5G58070.1 (e_value=1e-96) | Symbols: ATTIL, TIL | temperature-induced lipocalin | chr5:23500512-23501156 REVERSE LENGTH=186;; (*ITAG) Solyc07g005210.2.1 (e_value=3e-108) genomic_reference:SL2.40ch07 gene_region:202269-203546 transcript_region:SL2.40ch07:202269..203546- go_terms:GO:0005515,GO:0005319 functional_description:"Outer membrane lipoprotein blc (AHRD V1 **-- D0RZG9_ACICA); contains Interpro domain(s) IPR002345 Lipocalin "; GO:0005515,GO:0005319 NbS00008234g0010.1 protein AED:0.44 eAED:0.49 QI:379|0|0.5|1|1|0.5|2|0|34 NbS00008234g0009.1 protein AED:0.56 eAED:0.59 QI:0|0|0|1|0|0.5|2|0|68 NbS00033060g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|471; (*GB) gi|255545882|ref|XP_002514001.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G33590.1 (e_value=6e-146) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33600.1); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr4:16142585-16143985 REVERSE LENGTH=466;; (*ITAG) Solyc04g074930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58420420-58422122 transcript_region:SL2.40ch04:58420420..58422122+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033060g0008.1 protein AED:0.39 eAED:0.50 QI:193|0|0.2|1|0.5|0.6|5|0|197; (*ITAG) Solyc01g080860.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:72686531-72695319 transcript_region:SL2.40ch01:72686531..72695319- go_terms:GO:0016021 functional_description:"Protoheme IX farnesyltransferase (AHRD V1 ***- B6TRR8_MAIZE); contains Interpro domain(s) IPR006369 Protohaem IX farnesyltransferase "; GO:0016021 NbS00014242g0004.1 protein AED:0.20 eAED:0.21 QI:67|1|0.5|1|1|1|2|0|264; (*GB) gi|310892556|gb|ADP37420.1| (e_value=4e-125) ethylene-responsive-element-binding factor 5 [Petunia x hybrida];; (*SWP) sp|P42736|RAP23_ARATH (e_value=3e-47) Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2;; (*TAIR) AT3G16770.1 (e_value=3e-48) | Symbols: RAP2.3, ATEBP, ERF72, EBP | ethylene-responsive element binding protein | chr3:5705784-5706768 FORWARD LENGTH=248;; (*ITAG) Solyc01g065980.2.1 (e_value=6e-107) genomic_reference:SL2.40ch01 gene_region:65175046-65177501 transcript_region:SL2.40ch01:65175046..65177501- go_terms:GO:0003700 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-** C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00000357g0018.1 protein AED:0.34 eAED:0.35 QI:0|0.6|0.33|1|0.6|0.5|6|0|385; (*GB) gi|225464956|ref|XP_002274254.1| (e_value=1e-162) PREDICTED: putative phagocytic receptor 1b-like [Vitis vinifera];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-79) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT1G08350.1 (e_value=6e-132) | Symbols: | Endomembrane protein 70 protein family | chr1:2632970-2635055 REVERSE LENGTH=508;; (*ITAG) Solyc06g074310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42317439-42324174 transcript_region:SL2.40ch06:42317439..42324174- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6T9C2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00000357g0002.1 protein AED:0.47 eAED:0.73 QI:228|0|0|0.5|1|1|2|0|76; (*GB) gi|296084915|emb|CBI28324.3| (e_value=6e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G08350.1 (e_value=1e-21) | Symbols: | Endomembrane protein 70 protein family | chr1:2632970-2635055 REVERSE LENGTH=508;; (*ITAG) Solyc06g074310.2.1 (e_value=3e-38) genomic_reference:SL2.40ch06 gene_region:42317439-42324174 transcript_region:SL2.40ch06:42317439..42324174- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6T9C2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00000357g0012.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|496; (*GB) gi|224062173|ref|XP_002300789.1| (e_value=9e-131) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O81117|C94A1_VICSA (e_value=1e-119) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT5G63450.1 (e_value=7e-92) | Symbols: CYP94B1 | cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510;; (*ITAG) Solyc09g066150.1.1 (e_value=2e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60174324-60175832 transcript_region:SL2.40ch09:60174324..60175832+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000357g0016.1 protein AED:0.09 eAED:0.11 QI:0|0.5|0.4|1|1|1|5|0|426; (*GB) gi|388515499|gb|AFK45811.1| (e_value=5e-111) unknown [Medicago truncatula];; (*TAIR) AT3G44510.2 (e_value=9e-83) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc06g074330.2.1 (e_value=1e-141) genomic_reference:SL2.40ch06 gene_region:42343045-42345361 transcript_region:SL2.40ch06:42343045..42345361- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00000357g0017.1 protein AED:0.53 eAED:0.59 QI:167|0.5|0.66|1|1|1|3|0|102; (*GB) gi|282848224|gb|ADB02893.1| (e_value=3e-32) ubiquinol-cytochrome C reductase [Jatropha curcas];; (*SWP) sp|P46270|QCR9_SOLTU (e_value=7e-29) Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G52730.1 (e_value=6e-33) | Symbols: | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | chr3:19543146-19544167 REVERSE LENGTH=72;; (*ITAG) Solyc11g068400.1.1 (e_value=4e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50223989-50227276 transcript_region:SL2.40ch11:50223989..50227276- go_terms:GO:0005740 functional_description:"Ubiquinol-cytochrome C reductase (AHRD V1 ***- D6BQN0_9ROSI); contains Interpro domain(s) IPR008027 Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like "; GO:0005740 NbS00000357g0021.1 protein AED:0.37 eAED:0.46 QI:0|0|0|1|0|0|4|0|124; (*ITAG) Solyc10g049530.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00000357g0022.1 protein AED:0.41 eAED:0.69 QI:0|0|0|1|0|0|2|0|80 NbS00000357g0020.1 protein AED:0.41 eAED:0.86 QI:0|0|0|1|0|0|2|0|73 NbS00019749g0001.1 protein AED:0.09 eAED:0.09 QI:268|1|1|1|0|0.13|15|162|505; (*GB) gi|225435265|ref|XP_002282198.1| (e_value=0.0) PREDICTED: MLO12 protein [Vitis vinifera];; (*SWP) sp|Q94KB9|MLO3_ARATH (e_value=0.0) MLO-like protein 3 OS=Arabidopsis thaliana GN=MLO3 PE=2 SV=1;; (*TAIR) AT3G45290.1 (e_value=0.0) | Symbols: MLO3, ATMLO3 | Seven transmembrane MLO family protein | chr3:16617586-16621352 FORWARD LENGTH=508;; (*ITAG) Solyc06g010010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4699552-4706571 transcript_region:SL2.40ch06:4699552..4706571+ go_terms:GO:0016021 functional_description:"Mlo like protein (AHRD V1 ***- Q0WWA7_ARATH); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00019749g0007.1 protein AED:0.16 eAED:0.19 QI:127|0.8|0.75|1|0.4|0.5|16|590|897; (*GB) gi|225435251|ref|XP_002284945.1| (e_value=0.0) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=0.0) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.5 (e_value=0.0) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300792 FORWARD LENGTH=885;; (*ITAG) Solyc11g069160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00006227g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.62|0.33|1|0.87|0.77|9|0|404; (*GB) gi|359486525|ref|XP_002264331.2| (e_value=1e-110) PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera];; (*SWP) sp|Q9UNW9|NOVA2_HUMAN (e_value=4e-13) RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1;; (*TAIR) AT5G04430.1 (e_value=3e-99) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc11g007940.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2168262-2174193 transcript_region:SL2.40ch11:2168262..2174193+ go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 3 (AHRD V1 ***- Q6AY48_RAT); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00022848g0011.1 protein AED:0.01 eAED:0.01 QI:149|1|1|1|0|0.5|2|274|160; (*GB) gi|359497432|ref|XP_003635513.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100261790 [Vitis vinifera];; (*TAIR) AT1G78020.1 (e_value=2e-27) | Symbols: | Protein of unknown function (DUF581) | chr1:29338787-29339491 FORWARD LENGTH=162;; (*ITAG) Solyc04g054760.2.1 (e_value=3e-43) genomic_reference:SL2.40ch04 gene_region:52350113-52351308 transcript_region:SL2.40ch04:52350113..52351308- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00022848g0012.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|0|0|2|0|417; (*GB) gi|225438651|ref|XP_002281520.1| (e_value=2e-143) PREDICTED: trafficking protein particle complex subunit 12-like [Vitis vinifera];; (*SWP) sp|Q8K2L8|TPC12_MOUSE (e_value=9e-20) Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1 SV=2;; (*TAIR) AT4G39820.1 (e_value=1e-133) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18476698-18477924 REVERSE LENGTH=408;; (*ITAG) Solyc05g051840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61386178-61387311 transcript_region:SL2.40ch05:61386178..61387311+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 15 (AHRD V1 **-- B6TY66_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00043764g0009.1 protein AED:0.27 eAED:0.27 QI:177|0.81|0.75|1|0.54|0.66|12|493|541; (*GB) gi|225438483|ref|XP_002278249.1| (e_value=4e-139) PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Vitis vinifera];; (*SWP) sp|Q54UJ0|PSD12_DICDI (e_value=1e-52) 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1;; (*TAIR) AT5G09900.2 (e_value=3e-135) | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory subunit, putative (RPN5) | chr5:3089462-3092434 REVERSE LENGTH=442;; (*ITAG) Solyc04g012040.2.1 (e_value=3e-150) genomic_reference:SL2.40ch04 gene_region:4367412-4375553 transcript_region:SL2.40ch04:4367412..4375553+ go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515,GO:0004175 NbS00043764g0008.1 protein AED:0.24 eAED:0.29 QI:0|0|0|1|1|1|2|0|356; (*GB) gi|224096478|ref|XP_002310625.1| (e_value=4e-22) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9FGF8|ABR1_ARATH (e_value=8e-20) Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1;; (*TAIR) AT5G64750.1 (e_value=6e-21) | Symbols: ABR1 | Integrase-type DNA-binding superfamily protein | chr5:25891679-25893656 FORWARD LENGTH=391;; (*ITAG) Solyc04g012050.2.1 (e_value=6e-57) genomic_reference:SL2.40ch04 gene_region:4376146-4378819 transcript_region:SL2.40ch04:4376146..4378819- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001720g0005.1 protein AED:0.36 eAED:0.38 QI:0|0.73|0.81|1|0.93|1|16|359|560; (*GB) gi|225453845|ref|XP_002277837.1| (e_value=0.0) PREDICTED: lysophosphatidylcholine acyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q8BYI6|PCAT2_MOUSE (e_value=9e-33) Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus GN=Lpcat2 PE=1 SV=1;; (*TAIR) AT2G45670.1 (e_value=0.0) | Symbols: | calcineurin B subunit-related | chr2:18815070-18818382 REVERSE LENGTH=539;; (*ITAG) Solyc01g091950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77242437-77253671 transcript_region:SL2.40ch01:77242437..77253671+ go_terms:GO:0047184 functional_description:"1-acylglycerophosphocholine O-acyltransferase 1 (AHRD V1 **** PCAT1_DROME); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0047184 NbS00012517g0005.1 protein AED:0.03 eAED:0.28 QI:0|1|0.8|1|0.5|0.4|5|466|1157; (*GB) gi|359474506|ref|XP_002279753.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267731 [Vitis vinifera];; (*SWP) sp|B4NXB8|RAD54_DROYA (e_value=2e-44) DNA repair and recombination protein RAD54-like OS=Drosophila yakuba GN=okr PE=3 SV=2;; (*TAIR) AT1G05490.1 (e_value=8e-168) | Symbols: chr31 | chromatin remodeling 31 | chr1:1618795-1623195 REVERSE LENGTH=1410;; (*ITAG) Solyc08g077690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58764406-58768051 transcript_region:SL2.40ch08:58764406..58768051+ go_terms:GO:0005524 functional_description:"Chromodomain helicase DNA binding protein 5 (AHRD V1 **-- B1AK51_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00056635g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|413; (*GB) gi|359487465|ref|XP_003633597.1| (e_value=9e-47) PREDICTED: uncharacterized protein LOC100853056 [Vitis vinifera];; (*TAIR) AT2G44380.1 (e_value=3e-39) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073830.1.1 (e_value=5e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70428022-70428954 transcript_region:SL2.40ch01:70428022..70428954- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; NbS00007406g0010.1 protein AED:0.15 eAED:0.19 QI:0|0.71|0.75|1|0.42|0.5|8|370|584; (*GB) gi|297742094|emb|CBI33881.3| (e_value=3e-162) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FPS7|UBP20_ARATH (e_value=1e-111) Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1;; (*TAIR) AT4G17895.1 (e_value=9e-113) | Symbols: UBP20 | ubiquitin-specific protease 20 | chr4:9939914-9942698 FORWARD LENGTH=695;; (*ITAG) Solyc08g076910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57998077-58002392 transcript_region:SL2.40ch08:57998077..58002392- go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N2M4_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00007406g0101.1 protein AED:0.25 eAED:0.25 QI:216|0.8|0.83|1|1|1|6|0|362 NbS00009741g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|1|0.5|0.8|5|23|357; (*GB) gi|224140795|ref|XP_002323764.1| (e_value=7e-112) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=5e-94) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=4e-95) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105310.2.1 (e_value=3e-161) genomic_reference:SL2.40ch01 gene_region:85282545-85284363 transcript_region:SL2.40ch01:85282545..85284363- go_terms:GO:0006508,GO:0005737 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508,GO:0005737 NbS00009741g0201.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|762 NbS00011451g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-19) hypothetical protein [Nicotiana tabacum]; NbS00011451g0009.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|0|0.5|2|0|71 NbS00011451g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.33|1|1|1|6|0|925; (*GB) gi|357933581|dbj|BAL15057.1| (e_value=0.0) glutamate receptor 3.4 [Solanum lycopersicum];; (*SWP) sp|Q8GXJ4|GLR34_ARATH (e_value=0.0) Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2;; (*TAIR) AT1G05200.2 (e_value=0.0) | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor 3.4 | chr1:1505642-1509002 FORWARD LENGTH=959;; (*ITAG) Solyc05g045650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56534856-56539727 transcript_region:SL2.40ch05:56534856..56539727+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9IAE8_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00011451g0010.1 protein AED:0.29 eAED:0.32 QI:0|0|0|1|0|0|2|0|176; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-54) hypothetical protein [Nicotiana tabacum]; NbS00011451g0011.1 protein AED:0.41 eAED:0.54 QI:0|0|0|1|0|0|2|0|73; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-14) hypothetical protein [Nicotiana tabacum]; NbS00011199g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|170; (*GB) gi|224107871|ref|XP_002314634.1| (e_value=9e-43) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LTC5|ERF98_ARATH (e_value=6e-39) Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1;; (*TAIR) AT3G23230.1 (e_value=5e-40) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139;; (*ITAG) Solyc03g005510.1.1 (e_value=1e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:387846-388373 transcript_region:SL2.40ch03:387846..388373- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 *-** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00033418g0007.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.2|1|1|1|5|0|762; (*GB) gi|225428076|ref|XP_002278006.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243514 [Vitis vinifera];; (*TAIR) AT1G21740.1 (e_value=1e-59) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr1:7641580-7645078 FORWARD LENGTH=953;; (*ITAG) Solyc01g111740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89688498-89692535 transcript_region:SL2.40ch01:89688498..89692535+ functional_description:"Bzip-like transcription factor-like (AHRD V1 ***- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00033418g0002.1 protein AED:0.33 eAED:0.35 QI:0|0.6|0.66|1|0.8|0.66|6|790|360; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9SD12|P2C46_ARATH (e_value=0.0) Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1;; (*TAIR) AT3G51370.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:19070054-19071975 FORWARD LENGTH=379;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00033418g0014.1 protein AED:0.23 eAED:0.27 QI:0|0.33|0.5|1|0.33|0.25|4|0|292; (*GB) gi|225428078|ref|XP_002278026.1| (e_value=9e-103) PREDICTED: uncharacterized protein LOC100265837 [Vitis vinifera];; (*TAIR) AT2G20920.1 (e_value=2e-81) | Symbols: | Protein of unknown function (DUF3353) | chr2:8998728-8999789 FORWARD LENGTH=287;; (*ITAG) Solyc01g111750.2.1 (e_value=2e-134) genomic_reference:SL2.40ch01 gene_region:89692775-89695958 transcript_region:SL2.40ch01:89692775..89695958- functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 *--- B7K9K5_CYAP7)"; NbS00022423g0012.1 protein AED:0.14 eAED:0.15 QI:188|0.76|0.66|0.94|0.88|0.83|18|0|1464; (*GB) gi|225441567|ref|XP_002276675.1| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera];; (*SWP) sp|Q3U1J4|DDB1_MOUSE (e_value=6e-23) DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2;; (*TAIR) AT3G11960.1 (e_value=0.0) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:3786431-3793160 FORWARD LENGTH=1379;; (*ITAG) Solyc10g080630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61180672-61193578 transcript_region:SL2.40ch10:61180672..61193578- go_terms:GO:0005634 functional_description:"DNA damage-binding protein 1 (AHRD V1 *--- C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005634 NbS00022423g0009.1 protein AED:0.04 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|345; (*GB) gi|147803378|emb|CAN71047.1| (e_value=1e-177) hypothetical protein VITISV_015116 [Vitis vinifera];; (*SWP) sp|O80582|FBK46_ARATH (e_value=1e-61) F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2;; (*TAIR) AT2G44130.1 (e_value=8e-63) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:18253731-18254960 FORWARD LENGTH=409;; (*ITAG) Solyc10g080610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61166125-61167159 transcript_region:SL2.40ch10:61166125..61167159+ functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015187g0009.1 protein AED:0.20 eAED:0.20 QI:141|0.94|0.94|1|0.72|0.84|19|64|510; (*GB) gi|356504541|ref|XP_003521054.1| (e_value=0.0) PREDICTED: actin-related protein 4-like [Glycine max];; (*SWP) sp|Q84M92|ARP4_ARATH (e_value=0.0) Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1;; (*TAIR) AT1G18450.1 (e_value=0.0) | Symbols: ATARP4, ARP4 | actin-related protein 4 | chr1:6348199-6351766 FORWARD LENGTH=441;; (*ITAG) Solyc12g037980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:33727209-33744596 transcript_region:SL2.40ch12:33727209..33744596+ go_terms:GO:0005515 functional_description:"Actin-like protein 6A (AHRD V1 ***- B6TTQ6_MAIZE); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515 NbS00044577g0001.1 protein AED:0.34 eAED:0.58 QI:0|0|0|1|0|0|2|0|133; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-26) hypothetical protein [Nicotiana tabacum]; NbS00024523g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|235; (*GB) gi|297746348|emb|CBI16404.3| (e_value=1e-145) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=2e-96) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT3G57670.1 (e_value=3e-132) | Symbols: NTT, WIP2 | C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383;; (*ITAG) Solyc11g062060.1.1 (e_value=9e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45968163-45970774 transcript_region:SL2.40ch11:45968163..45970774- go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- D7KHP2_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00033633g0006.1 protein AED:0.01 eAED:0.01 QI:355|1|1|1|0.75|0.8|5|178|567; (*GB) gi|255571909|ref|XP_002526897.1| (e_value=2e-76) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT2G40070.2 (e_value=1e-62) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink). | chr2:16728378-16731040 REVERSE LENGTH=567;; (*ITAG) Solyc03g096090.2.1 (e_value=3e-95) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00027415g0010.1 protein AED:0.20 eAED:0.21 QI:965|0.66|0.69|1|0.83|0.76|13|326|542; (*GB) gi|359483345|ref|XP_003632941.1| (e_value=0.0) PREDICTED: aspartic proteinase isoform 2 [Vitis vinifera];; (*SWP) sp|O04057|ASPR_CUCPE (e_value=0.0) Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc02g032940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20185974-20192184 transcript_region:SL2.40ch02:20185974..20192184- go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q8L6A8_THECC); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00027415g0104.1 protein AED:0.15 eAED:0.16 QI:147|0.75|0.8|1|1|1|5|0|470 NbS00043230g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|75 NbS00043230g0006.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0|2|0|122; (*ITAG) Solyc10g049530.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00043230g0008.1 protein AED:0.41 eAED:0.51 QI:0|0|0|1|0|0|3|0|72 NbS00005963g0016.1 protein AED:0.14 eAED:0.14 QI:25|1|1|1|0|0|2|138|697; (*GB) gi|255545012|ref|XP_002513567.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=4e-97) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=2e-103) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc01g008500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2608681-2614375 transcript_region:SL2.40ch01:2608681..2614375+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005963g0015.1 protein AED:0.17 eAED:0.17 QI:60|0.6|0.33|1|0.4|0.5|6|0|368; (*GB) gi|225435429|ref|XP_002285411.1| (e_value=4e-164) PREDICTED: uncharacterized protein LOC100267343 isoform 1 [Vitis vinifera];; (*TAIR) AT3G20920.1 (e_value=1e-161) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=365;; (*ITAG) Solyc01g008470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2548568-2554744 transcript_region:SL2.40ch01:2548568..2554744+ go_terms:GO:0016021 functional_description:"Non-selective cation channel-2 family (AHRD V1 **-- C1N231_MICPS); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00005963g0010.1 protein AED:0.56 eAED:0.56 QI:202|0.33|0.5|0.5|0.66|0.5|4|0|128 NbS00005963g0002.1 protein AED:0.27 eAED:0.27 QI:213|0.33|0.25|0.75|1|1|4|0|409; (*GB) gi|359490253|ref|XP_002267680.2| (e_value=2e-143) PREDICTED: probable receptor-like protein kinase At5g39020-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=7e-86) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G67000.1 (e_value=5e-87) | Symbols: | Protein kinase superfamily protein | chr1:25004217-25007604 REVERSE LENGTH=892;; (*ITAG) Solyc02g081500.2.1 (e_value=3e-141) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005963g0005.1 protein AED:0.41 eAED:0.87 QI:0|0|0|1|1|1|2|0|73; (*GB) gi|147795855|emb|CAN76527.1| (e_value=2e-20) hypothetical protein VITISV_010779 [Vitis vinifera];; (*TAIR) AT4G04480.1 (e_value=3e-14) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398;; (*ITAG) Solyc02g080840.1.1 (e_value=3e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39539196-39540416 transcript_region:SL2.40ch02:39539196..39540416+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00005963g0008.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|0|1|0|132; (*GB) gi|224117938|ref|XP_002331515.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g080850.1.1 (e_value=8e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39542836-39544104 transcript_region:SL2.40ch02:39542836..39544104+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00025592g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.2|0.16|1|0|0.33|6|0|511; (*GB) gi|224124160|ref|XP_002319260.1| (e_value=5e-177) GH3 family protein [Populus trichocarpa];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=2e-173) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=2e-174) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc10g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1135018-1137492 transcript_region:SL2.40ch10:1135018..1137492- go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00025592g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|129 NbS00052463g0007.1 protein AED:0.14 eAED:0.14 QI:315|1|1|1|0.33|0.75|4|506|328; (*GB) gi|359487677|ref|XP_002277366.2| (e_value=3e-110) PREDICTED: uncharacterized protein LOC100266586 [Vitis vinifera];; (*TAIR) AT1G09320.1 (e_value=4e-73) | Symbols: | agenet domain-containing protein | chr1:3010270-3012228 REVERSE LENGTH=517;; (*ITAG) Solyc01g100780.2.1 (e_value=8e-160) genomic_reference:SL2.40ch01 gene_region:82482888-82486666 transcript_region:SL2.40ch01:82482888..82486666- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KJP0_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00052463g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|225450543|ref|XP_002281636.1| (e_value=3e-53) PREDICTED: uncharacterized protein LOC100245914 [Vitis vinifera];; (*TAIR) AT1G56580.1 (e_value=9e-45) | Symbols: SVB | Protein of unknown function, DUF538 | chr1:21198402-21198902 REVERSE LENGTH=166;; (*ITAG) Solyc01g100770.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:82477939-82478706 transcript_region:SL2.40ch01:82477939..82478706+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 *-*- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00030853g0006.1 protein AED:0.20 eAED:0.20 QI:108|1|0.33|1|0|0.66|3|0|114; (*GB) gi|225433788|ref|XP_002272866.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100244603 [Vitis vinifera];; (*TAIR) AT1G32310.1 (e_value=4e-31) | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11653619-11654538 FORWARD LENGTH=100;; (*ITAG) Solyc08g076580.2.1 (e_value=2e-46) genomic_reference:SL2.40ch08 gene_region:57705826-57709166 transcript_region:SL2.40ch08:57705826..57709166+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042944g0005.1 protein AED:0.29 eAED:0.30 QI:0|1|0.83|1|1|1|6|0|531; (*GB) gi|225445774|ref|XP_002274694.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251901 [Vitis vinifera];; (*TAIR) AT2G24100.1 (e_value=2e-151) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466;; (*ITAG) Solyc03g117680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60804015-60807706 transcript_region:SL2.40ch03:60804015..60807706- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00042944g0008.1 protein AED:0.30 eAED:0.33 QI:0|0.5|0|1|1|1|3|0|184; (*GB) gi|224072753|ref|XP_002303864.1| (e_value=3e-85) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80940.1 (e_value=2e-69) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:30410959-30411943 FORWARD LENGTH=213;; (*ITAG) Solyc03g117670.2.1 (e_value=1e-101) genomic_reference:SL2.40ch03 gene_region:60801295-60803799 transcript_region:SL2.40ch03:60801295..60803799+ functional_description:"Snf1-related kinase interacting protein SKI2 (AHRD V1 *-*- A3KLL3_PHYPA)"; NbS00031578g0003.1 protein AED:0.03 eAED:0.08 QI:0|0|0|1|0|0|2|0|467; (*GB) gi|350539914|ref|NP_001233806.1| (e_value=2e-123) TCP transcription factor 12 [Solanum lycopersicum];; (*SWP) sp|Q9C518|TCP8_ARATH (e_value=3e-57) Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1;; (*TAIR) AT1G58100.1 (e_value=2e-58) | Symbols: | TCP family transcription factor | chr1:21512680-21513885 REVERSE LENGTH=401;; (*ITAG) Solyc11g020670.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11820759-11821883 transcript_region:SL2.40ch11:11820759..11821883- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00037934g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|1|1|1|1|4|319|251; (*GB) gi|302142216|emb|CBI19419.3| (e_value=5e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4IPX8|SYM1_GIBZE (e_value=2e-22) Protein SYM1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SYM1 PE=3 SV=1;; (*TAIR) AT5G43140.1 (e_value=3e-86) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:17321570-17323224 FORWARD LENGTH=254;; (*ITAG) Solyc12g088420.1.1 (e_value=2e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62246694-62249859 transcript_region:SL2.40ch12:62246694..62249859- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B6U5S2_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00008123g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|563; (*GB) gi|225444916|ref|XP_002279603.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 5-like [Vitis vinifera];; (*SWP) sp|Q9SU79|PAO5_ARATH (e_value=0.0) Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1;; (*TAIR) AT4G29720.1 (e_value=0.0) | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533;; (*ITAG) Solyc05g018880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:24474233-24475771 transcript_region:SL2.40ch05:24474233..24475771- go_terms:GO:0046592 functional_description:"Polyamine oxidase (AHRD V1 **** A1CAV3_ASPCL); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592 NbS00023568g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|154; (*GB) gi|296085406|emb|CBI29138.3| (e_value=1e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1K1|ORG2_ARATH (e_value=3e-30) Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1;; (*TAIR) AT3G56970.1 (e_value=3e-31) | Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253;; (*ITAG) Solyc10g079680.1.1 (e_value=2e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60501972-60503972 transcript_region:SL2.40ch10:60501972..60503972+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00023398g0015.1 protein AED:0.12 eAED:0.12 QI:178|1|0.75|1|1|1|4|158|293; (*GB) gi|357441633|ref|XP_003591094.1| (e_value=0.0) Glucose and ribitol dehydrogenase [Medicago truncatula];; (*SWP) sp|Q5KTS5|GRDH_DAUCA (e_value=2e-174) Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1;; (*TAIR) AT1G54870.1 (e_value=4e-175) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:20459011-20460417 FORWARD LENGTH=335;; (*ITAG) Solyc01g098850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81004479-81006268 transcript_region:SL2.40ch01:81004479..81006268- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7L3S3_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00023398g0010.1 protein AED:0.27 eAED:0.27 QI:212|0.8|0.66|1|0.2|0.33|6|355|251; (*GB) gi|359487787|ref|XP_002280880.2| (e_value=8e-88) PREDICTED: uncharacterized protein LOC100254480 [Vitis vinifera];; (*TAIR) AT3G05250.1 (e_value=7e-70) | Symbols: | RING/U-box superfamily protein | chr3:1495635-1497387 FORWARD LENGTH=278;; (*ITAG) Solyc01g098830.2.1 (e_value=3e-134) genomic_reference:SL2.40ch01 gene_region:80993286-80997091 transcript_region:SL2.40ch01:80993286..80997091+ go_terms:GO:0008270 functional_description:"RING zinc finger protein-like protein (AHRD V1 **-- Q84KA3_CUCME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00023398g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|75; (*ITAG) Solyc01g098860.2.1 (e_value=8e-11) genomic_reference:SL2.40ch01 gene_region:81006669-81008534 transcript_region:SL2.40ch01:81006669..81008534+ functional_description:"Uncharacterized GPI-anchored protein At3g06035 (AHRD V1 ***- UGPI4_ARATH)"; NbS00023398g0009.1 protein AED:0.37 eAED:0.37 QI:0|0.66|1|1|0.66|0.75|4|447|247; (*GB) gi|313507394|gb|ADR65111.1| (e_value=2e-85) mevalonate kinase [Catharanthus roseus];; (*SWP) sp|P46086|KIME_ARATH (e_value=7e-69) Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1;; (*TAIR) AT5G27450.3 (e_value=5e-70) | Symbols: MK | mevalonate kinase | chr5:9691051-9692975 FORWARD LENGTH=378;; (*ITAG) Solyc01g098840.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:80999140-81004317 transcript_region:SL2.40ch01:80999140..81004317+ go_terms:GO:0004496 functional_description:"Mevalonate kinase (AHRD V1 **** Q944G2_HEVBR); contains Interpro domain(s) IPR006205 Mevalonate kinase "; GO:0004496 NbS00008431g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.33|0.66|1|1|6|0|522; (*GB) gi|225458346|ref|XP_002281672.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=0.0) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g089090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62655918-62659826 transcript_region:SL2.40ch12:62655918..62659826- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00008431g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|129; (*ITAG) Solyc12g089070.1.1 (e_value=8e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62651330-62651680 transcript_region:SL2.40ch12:62651330..62651680+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00042150g0002.1 protein AED:0.36 eAED:0.37 QI:215|0|0.5|1|0|0.5|2|196|154; (*ITAG) Solyc03g093340.2.1 (e_value=2e-14) genomic_reference:SL2.40ch03 gene_region:48060313-48064135 transcript_region:SL2.40ch03:48060313..48064135+ functional_description:"Genomic DNA chromosome 5 TAC clone K11J9 (AHRD V1 *-*- Q9FKH0_ARATH)"; NbS00035965g0001.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.33|1|1|3|0|161; (*GB) gi|18394828|ref|NP_564105.1| (e_value=2e-19) S-phase kinase-associated protein 1 [Arabidopsis thaliana];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=5e-21) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=4e-22) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008230.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2466407-2466883 transcript_region:SL2.40ch11:2466407..2466883+ go_terms:GO:0005515 functional_description:"SKP1-like 1 (AHRD V1 ***- B6CNU7_PETHY); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00004914g0008.1 protein AED:0.28 eAED:0.34 QI:0|1|0|1|1|1|2|0|419; (*ITAG) Solyc06g060730.2.1 (e_value=9e-39) genomic_reference:SL2.40ch06 gene_region:35136805-35141528 transcript_region:SL2.40ch06:35136805..35141528- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00004914g0001.1 protein AED:0.52 eAED:0.52 QI:0|0|0.5|1|0|0.5|2|60|133; (*GB) gi|255576046|ref|XP_002528918.1| (e_value=3e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g060730.2.1 (e_value=1e-34) genomic_reference:SL2.40ch06 gene_region:35136805-35141528 transcript_region:SL2.40ch06:35136805..35141528- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00005489g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|379056262|dbj|BAL68171.1| (e_value=5e-129) ethylene response factor #208 [Nicotiana tabacum];; (*SWP) sp|Q40477|ERF4_TOBAC (e_value=5e-31) Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1;; (*TAIR) AT5G44210.1 (e_value=1e-28) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc10g009110.1.1 (e_value=1e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00005489g0009.1 protein AED:0.29 eAED:0.33 QI:0|1|0.71|1|1|1|7|0|719; (*GB) gi|359483765|ref|XP_002273740.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243637 [Vitis vinifera];; (*SWP) sp|Q9SGN6|NSL1_ARATH (e_value=0.0) MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=1 SV=1;; (*TAIR) AT1G28380.1 (e_value=0.0) | Symbols: NSL1 | MAC/Perforin domain-containing protein | chr1:9963696-9966060 FORWARD LENGTH=612;; (*ITAG) Solyc02g077780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37203757-37212202 transcript_region:SL2.40ch02:37203757..37212202- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00005489g0012.1 protein AED:0.21 eAED:0.60 QI:0|0|0|1|0|0|2|0|90; (*ITAG) Solyc01g056230.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00005551g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.83|1|0.4|0.5|6|0|352; (*GB) gi|224091869|ref|XP_002309380.1| (e_value=5e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-61) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G30420.1 (e_value=7e-112) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:14877069-14878914 FORWARD LENGTH=373;; (*ITAG) Solyc07g006290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1075875-1081383 transcript_region:SL2.40ch07:1075875..1081383- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9M0B8_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00005551g0105.1 protein AED:0.08 eAED:0.08 QI:848|0.5|0.4|1|0.75|0.6|5|0|343 NbS00032171g0001.1 protein AED:0.02 eAED:0.02 QI:151|1|0.5|1|0|0|2|0|580; (*GB) gi|359497788|ref|XP_002273247.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera];; (*SWP) sp|Q9SKQ4|PP167_ARATH (e_value=2e-117) Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1;; (*TAIR) AT2G21090.1 (e_value=1e-118) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:9045695-9047488 REVERSE LENGTH=597;; (*ITAG) Solyc01g096440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79289995-79292085 transcript_region:SL2.40ch01:79289995..79292085- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00015510g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.62|0.55|1|0.5|0.66|9|0|562; (*GB) gi|359489252|ref|XP_002263787.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=8e-98) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc01g088400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00010124g0026.1 protein AED:0.15 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|286; (*GB) gi|225430133|ref|XP_002284708.1| (e_value=8e-18) PREDICTED: uncharacterized protein LOC100264664 [Vitis vinifera];; (*ITAG) Solyc08g068060.2.1 (e_value=2e-125) genomic_reference:SL2.40ch08 gene_region:54362065-54365885 transcript_region:SL2.40ch08:54362065..54365885+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010124g0025.1 protein AED:0.01 eAED:0.01 QI:161|1|0.5|1|1|1|2|0|211; (*GB) gi|225457937|ref|XP_002273919.1| (e_value=1e-93) PREDICTED: 60S ribosomal protein L24, mitochondrial [Vitis vinifera];; (*SWP) sp|P36525|RM24_YEAST (e_value=4e-13) 54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2;; (*TAIR) AT4G31460.1 (e_value=3e-87) | Symbols: | Ribosomal L28 family | chr4:15259773-15260847 REVERSE LENGTH=212;; (*ITAG) Solyc08g065760.2.1 (e_value=2e-134) genomic_reference:SL2.40ch08 gene_region:51280952-51284144 transcript_region:SL2.40ch08:51280952..51284144- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 *-*- D5BMV5_PUNMI); contains Interpro domain(s) IPR001383 Ribosomal protein L28 "; GO:0005840 NbS00010124g0024.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.76|1|0.87|0.88|17|0|1525; (*GB) gi|296081949|emb|CBI20954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25730.2 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54307990-54322617 transcript_region:SL2.40ch08:54307990..54322617- functional_description:"Zinc finger-like (AHRD V1 ***- Q5ZD36_ORYSJ)"; NbS00010124g0028.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.4|1|0.66|0.5|10|0|738; (*GB) gi|296081949|emb|CBI20954.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q551A3|Y6689_DICDI (e_value=3e-12) Protein DDB_G0276689 OS=Dictyostelium discoideum GN=DDB_G0276689 PE=4 SV=2;; (*TAIR) AT2G25730.2 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbS00010124g0027.1 protein AED:0.40 eAED:0.40 QI:27|0.5|0|0.66|1|1|3|0|194; (*GB) gi|255551092|ref|XP_002516594.1| (e_value=8e-90) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT2G25730.2 (e_value=3e-72) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068010.1.1 (e_value=6e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbS00026182g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|298; (*GB) gi|356557042|ref|XP_003546827.1| (e_value=1e-53) PREDICTED: 50S ribosomal protein L7/L12-like [Glycine max];; (*SWP) sp|P41189|RL7_LIBAF (e_value=4e-15) 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1;; (*TAIR) AT1G70190.2 (e_value=2e-47) | Symbols: | Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like | chr1:26430616-26431242 FORWARD LENGTH=208;; (*ITAG) Solyc02g031970.1.1 (e_value=3e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:17931623-17932270 transcript_region:SL2.40ch02:17931623..17932270- go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00026182g0008.1 protein AED:0.21 eAED:0.24 QI:0|1|0|1|1|1|2|0|394; (*GB) gi|356497667|ref|XP_003517681.1| (e_value=3e-56) PREDICTED: uncharacterized protein LOC100777884 [Glycine max];; (*TAIR) AT3G53440.2 (e_value=5e-33) | Symbols: | Homeodomain-like superfamily protein | chr3:19810936-19812474 FORWARD LENGTH=512;; (*ITAG) Solyc01g068540.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:70151031-70157046 transcript_region:SL2.40ch01:70151031..70157046+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017877 MYB-like "; NbS00048017g0004.1 protein AED:0.21 eAED:0.22 QI:194|0.66|0.85|1|0.66|0.85|7|325|179; (*GB) gi|266879|sp|P29687.1|RAB5_TOBAC (e_value=1e-117) RecName: Full=Ras-related protein Rab5;; (*SWP) sp|P29687|RAB5_TOBAC (e_value=4e-119) Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1;; (*TAIR) AT5G45130.1 (e_value=4e-97) | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200;; (*ITAG) Solyc02g036450.2.1 (e_value=2e-115) genomic_reference:SL2.40ch02 gene_region:21496239-21501862 transcript_region:SL2.40ch02:21496239..21501862- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00050252g0003.1 protein AED:0.27 eAED:0.27 QI:108|1|0.6|1|1|1|5|0|270; (*GB) gi|224134991|ref|XP_002327540.1| (e_value=3e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C718|RH20_ARATH (e_value=4e-151) DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1;; (*TAIR) AT1G55150.1 (e_value=3e-152) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:20574634-20577141 FORWARD LENGTH=501;; (*ITAG) Solyc12g044860.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45650517-45657385 transcript_region:SL2.40ch12:45650517..45657385- go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00002300g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|359481983|ref|XP_002283401.2| (e_value=6e-55) PREDICTED: ethylene-responsive transcription factor ERF024 [Vitis vinifera];; (*SWP) sp|Q9SJR0|ERF24_ARATH (e_value=4e-48) Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1;; (*TAIR) AT2G36450.1 (e_value=3e-49) | Symbols: HRD | Integrase-type DNA-binding superfamily protein | chr2:15294303-15294857 REVERSE LENGTH=184;; (*ITAG) Solyc10g083560.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62666894-62667487 transcript_region:SL2.40ch10:62666894..62667487- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00002300g0014.1 protein AED:0.27 eAED:0.27 QI:308|0.5|0.66|1|0.5|0.33|3|0|274; (*GB) gi|83283995|gb|ABC01905.1| (e_value=4e-151) fructose-bisphosphate aldolase-like protein [Solanum tuberosum];; (*SWP) sp|P46257|ALF2_PEA (e_value=1e-132) Fructose-bisphosphate aldolase, cytoplasmic isozyme 2 OS=Pisum sativum PE=3 SV=1;; (*TAIR) AT2G36460.1 (e_value=6e-140) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc09g009260.2.1 (e_value=3e-154) genomic_reference:SL2.40ch09 gene_region:2643600-2645801 transcript_region:SL2.40ch09:2643600..2645801- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q2PYX3_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00002300g0015.1 protein AED:0.44 eAED:0.57 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|281485510|dbj|BAI59774.1| (e_value=1e-37) aldolase C-1 [Phyllostachys edulis];; (*SWP) sp|P17784|ALF_ORYSJ (e_value=8e-39) Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2;; (*TAIR) AT2G36460.2 (e_value=1e-38) | Symbols: | Aldolase superfamily protein | chr2:15296929-15297732 REVERSE LENGTH=267;; (*ITAG) Solyc10g083570.1.1 (e_value=1e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62685138-62687861 transcript_region:SL2.40ch10:62685138..62687861- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q308A5_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00031962g0012.1 protein AED:0.03 eAED:0.03 QI:349|0.75|0.8|1|0.5|0.6|5|323|764; (*GB) gi|357444799|ref|XP_003592677.1| (e_value=0.0) mscS family protein, putative [Medicago truncatula];; (*SWP) sp|F4IME2|MSL8_ARATH (e_value=0.0) Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2;; (*TAIR) AT1G78610.1 (e_value=0.0) | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856;; (*ITAG) Solyc12g094420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62978008-62981180 transcript_region:SL2.40ch12:62978008..62981180+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 ***- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00031962g0006.1 protein AED:0.28 eAED:0.33 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|255539098|ref|XP_002510614.1| (e_value=1e-90) glutathione-s-transferase theta, gst, putative [Ricinus communis];; (*SWP) sp|P42761|GSTFA_ARATH (e_value=3e-38) Glutathione S-transferase F10 OS=Arabidopsis thaliana GN=GSTF10 PE=1 SV=3;; (*TAIR) AT2G30870.1 (e_value=2e-39) | Symbols: ATGSTF10, ERD13, ATGSTF4, GSTF10 | glutathione S-transferase PHI 10 | chr2:13141490-13142392 FORWARD LENGTH=215;; (*ITAG) Solyc12g094430.1.1 (e_value=3e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62982389-62984544 transcript_region:SL2.40ch12:62982389..62984544+ functional_description:"Glutathione S-transferase (AHRD V1 ***- C7F8A3_ARAHY); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00031962g0014.1 protein AED:0.17 eAED:0.17 QI:570|0.75|0.6|1|0.5|0.6|5|385|268; (*GB) gi|356508987|ref|XP_003523234.1| (e_value=7e-110) PREDICTED: high mobility group B protein 9-like [Glycine max];; (*SWP) sp|Q9SGS2|HMGB9_ARATH (e_value=4e-99) High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1;; (*TAIR) AT1G76110.1 (e_value=3e-100) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:28555287-28557465 REVERSE LENGTH=338;; (*ITAG) Solyc12g094440.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62989670-62995019 transcript_region:SL2.40ch12:62989670..62995019- go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00006477g0003.1 protein AED:0.13 eAED:0.13 QI:504|0|0.5|1|0|0.5|2|0|719; (*GB) gi|359496668|ref|XP_002263304.2| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100249180 [Vitis vinifera];; (*TAIR) AT2G22795.1 (e_value=9e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). | chr2:9697380-9699584 REVERSE LENGTH=734;; (*ITAG) Solyc02g091890.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47692878-47695214 transcript_region:SL2.40ch02:47692878..47695214- functional_description:"MRNA complete cds clone RAFL24-22-E06 (AHRD V1 *-*- Q67YL8_ARATH)"; NbS00006477g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|0|0|4|541|96; (*GB) gi|388493726|gb|AFK34929.1| (e_value=3e-39) unknown [Lotus japonicus];; (*SWP) sp|Q9T070|COX6A_ARATH (e_value=1e-35) Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1;; (*TAIR) AT4G37830.1 (e_value=1e-36) | Symbols: | cytochrome c oxidase-related | chr4:17787672-17788762 REVERSE LENGTH=102;; (*ITAG) Solyc02g091880.2.1 (e_value=1e-57) genomic_reference:SL2.40ch02 gene_region:47688583-47691682 transcript_region:SL2.40ch02:47688583..47691682+ go_terms:GO:0030234,GO:0004129 functional_description:"Cytochrome c oxidase subunit VIa family protein expressed (AHRD V1 **** Q7XZW4_ORYSJ); contains Interpro domain(s) IPR001349 Cytochrome c oxidase, subunit VIa "; GO:0030234,GO:0004129 NbS00006477g0009.1 protein AED:0.02 eAED:0.13 QI:0|0|0|1|0|0|3|0|430; (*GB) gi|147766517|emb|CAN65403.1| (e_value=0.0) hypothetical protein VITISV_036314 [Vitis vinifera];; (*SWP) sp|O49543|NFS1_ARATH (e_value=0.0) Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1;; (*TAIR) AT5G65720.1 (e_value=0.0) | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen fixation S (NIFS)-like 1 | chr5:26296349-26297710 FORWARD LENGTH=453;; (*ITAG) Solyc02g091900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47696576-47698280 transcript_region:SL2.40ch02:47696576..47698280+ go_terms:GO:0031071 functional_description:"Cysteine desulfurase (AHRD V1 **** B6T4S0_MAIZE); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0031071 NbS00036515g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|154; (*GB) gi|356570914|ref|XP_003553628.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100794951 [Glycine max];; (*ITAG) Solyc01g009250.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:3278676-3279403 transcript_region:SL2.40ch01:3278676..3279403- functional_description:"Unknown Protein (AHRD V1)"; NbS00039634g0006.1 protein AED:0.01 eAED:0.01 QI:277|1|1|1|1|0.66|3|134|416; (*GB) gi|255587500|ref|XP_002534293.1| (e_value=0.0) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=7e-67) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT2G01940.1 (e_value=5e-141) | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445;; (*ITAG) Solyc06g072360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41024896-41027194 transcript_region:SL2.40ch06:41024896..41027194- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00039634g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|311; (*GB) gi|319718183|gb|ADV59393.1| (e_value=6e-162) GAGA-binding transcriptional activator [Solanum lycopersicum];; (*SWP) sp|Q9LDE2|BPC2_ARATH (e_value=1e-78) Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1;; (*TAIR) AT1G14685.1 (e_value=8e-80) | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine 2 | chr1:5043086-5043925 FORWARD LENGTH=279;; (*ITAG) Solyc06g072370.2.1 (e_value=3e-146) genomic_reference:SL2.40ch06 gene_region:41033000-41034660 transcript_region:SL2.40ch06:41033000..41034660- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- Q2PQS1_ARATH); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00005577g0011.1 protein AED:0.18 eAED:0.18 QI:147|0.75|0.77|1|0.75|0.88|9|299|320; (*GB) gi|350536239|ref|NP_001234492.1| (e_value=0.0) nuclear matrix protein 1 [Solanum lycopersicum];; (*TAIR) AT5G17620.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805934-5808455 REVERSE LENGTH=329;; (*ITAG) Solyc01g081380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73103761-73110188 transcript_region:SL2.40ch01:73103761..73110188- functional_description:"Nuclear matrix protein 1 (AHRD V1 ***- Q93XE2_SOLLC); contains Interpro domain(s) IPR010604 Plant nuclear matrix 1 "; NbS00005577g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|359489082|ref|XP_002264736.2| (e_value=0.0) PREDICTED: xylulose 5-phosphate/phosphate translocator, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LF61|XPT_ARATH (e_value=0.0) Xylulose 5-phosphate/phosphate translocator, chloroplastic OS=Arabidopsis thaliana GN=XPT PE=2 SV=1;; (*TAIR) AT5G17630.1 (e_value=0.0) | Symbols: | Nucleotide/sugar transporter family protein | chr5:5809475-5810728 FORWARD LENGTH=417;; (*ITAG) Solyc01g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73112100-73113905 transcript_region:SL2.40ch01:73112100..73113905+ go_terms:GO:0008524 functional_description:"Glucose 6 phosphate/phosphate translocator-like protein (AHRD V1 **** Q9LF61_ARATH); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00005577g0012.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0|3|0|112 NbS00021513g0004.1 protein AED:0.10 eAED:0.28 QI:0|0|0|0.75|0.66|0.75|4|0|271; (*ITAG) Solyc01g007200.2.1 (e_value=5e-35) genomic_reference:SL2.40ch01 gene_region:1774695-1778343 transcript_region:SL2.40ch01:1774695..1778343+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004466g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|904; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=1e-71) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=9e-56) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g015210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5390900-5396168 transcript_region:SL2.40ch04:5390900..5396168- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00004466g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|455; (*GB) gi|359481026|ref|XP_002270512.2| (e_value=9e-153) PREDICTED: cation/calcium exchanger 3-like [Vitis vinifera];; (*SWP) sp|Q9FKP1|CCX1_ARATH (e_value=1e-140) Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1;; (*TAIR) AT5G17860.1 (e_value=8e-142) | Symbols: CAX7 | calcium exchanger 7 | chr5:5902638-5904350 REVERSE LENGTH=570;; (*ITAG) Solyc09g072690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60804635-60806341 transcript_region:SL2.40ch09:60804635..60806341- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (Fragment) (AHRD V1 *-** A3GGW1_PICST); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00004373g0106.1 protein AED:0.19 eAED:0.19 QI:91|1|1|1|0.5|1|3|395|266 NbS00004373g0201.1 protein AED:0.25 eAED:0.65 QI:0|0|0.5|1|0|0.5|2|183|70 NbS00026963g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.33|1|0.33|3|0|65 NbS00053750g0001.1 protein AED:0.38 eAED:0.41 QI:12|-1|0|1|-1|1|1|0|82; (*ITAG) Solyc01g094820.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:77988011-77992084 transcript_region:SL2.40ch01:77988011..77992084- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 **-- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00023600g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|225445023|ref|XP_002283114.1| (e_value=5e-33) PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera];; (*SWP) sp|Q9M0G2|C3H49_ARATH (e_value=2e-19) Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1;; (*TAIR) AT4G29190.1 (e_value=2e-20) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr4:14392233-14393303 REVERSE LENGTH=356;; (*ITAG) Solyc12g008660.1.1 (e_value=8e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00038295g0011.1 protein AED:0.01 eAED:0.01 QI:46|1|0.66|1|0.5|0.66|3|0|588; (*GB) gi|225435640|ref|XP_002285660.1| (e_value=0.0) PREDICTED: uncharacterized protein yqeH-like [Vitis vinifera];; (*SWP) sp|P54453|YQEH_BACSU (e_value=4e-42) Uncharacterized protein yqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1;; (*TAIR) AT4G10620.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:6564297-6566402 FORWARD LENGTH=597;; (*ITAG) Solyc01g006180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:813047-818684 transcript_region:SL2.40ch01:813047..818684- go_terms:GO:0003924 functional_description:"GTP-binding protein-like (AHRD V1 ***- Q69NK1_ORYSJ)"; GO:0003924 NbS00038295g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.66|1|0|0|3|403|83 NbS00038295g0010.1 protein AED:0.40 eAED:0.42 QI:0|0.5|0.2|1|0.75|0.8|5|0|336; (*GB) gi|225435638|ref|XP_002285659.1| (e_value=3e-174) PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera];; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=1e-161) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1;; (*TAIR) AT3G58040.1 (e_value=1e-162) | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308;; (*ITAG) Solyc01g006190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00049292g0001.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|66; (*ITAG) Solyc03g046280.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:16174863-16175261 transcript_region:SL2.40ch03:16174863..16175261+ functional_description:"HAT family dimerisation domain containing protein (AHRD V1 ***- Q7XE06_ORYSJ)"; NbS00047781g0006.1 protein AED:0.09 eAED:0.09 QI:66|0.90|0.75|1|0.90|0.83|12|0|1069; (*GB) gi|380509269|gb|AFD64637.1| (e_value=0.0) sucrose-phosphate synthase A2 [Solanum lycopersicum];; (*SWP) sp|O22060|SPSA1_CITUN (e_value=0.0) Probable sucrose-phosphate synthase 1 OS=Citrus unshiu GN=SPS1 PE=2 SV=1;; (*TAIR) AT5G11110.1 (e_value=0.0) | Symbols: SPS1, ATSPS2F, KNS2, SPS2F | sucrose phosphate synthase 2F | chr5:3536426-3540901 FORWARD LENGTH=1047;; (*ITAG) Solyc08g042000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28598289-28605520 transcript_region:SL2.40ch08:28598289..28605520- go_terms:GO:0046524 functional_description:"Sucrose phosphate synthase protein 1 (AHRD V1 **** B2BMQ3_PRUPE); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0046524 NbS00018752g0009.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.8|1|0|0.2|5|126|121 NbS00018752g0008.1 protein AED:0.43 eAED:0.43 QI:0|0|0.16|1|0|0.16|6|26|194 NbS00022308g0007.1 protein AED:0.10 eAED:0.10 QI:740|0.91|0.84|1|0.75|0.69|13|0|1119; (*GB) gi|374095603|gb|AEY85029.1| (e_value=0.0) cohesin subunit [Camellia sinensis];; (*SWP) sp|Q9FQ19|SCC13_ARATH (e_value=4e-37) Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2;; (*TAIR) AT5G16270.1 (e_value=7e-113) | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion 1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031;; (*ITAG) Solyc11g008740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2912620-2925432 transcript_region:SL2.40ch11:2912620..2925432- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00048042g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|536; (*GB) gi|224086964|ref|XP_002308019.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41640.1 (e_value=4e-174) | Symbols: | Glycosyltransferase family 61 protein | chr2:17360654-17362391 FORWARD LENGTH=500;; (*ITAG) Solyc04g016180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6913776-6916202 transcript_region:SL2.40ch04:6913776..6916202- go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ6_MEDTR); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757 NbS00059241g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|133; (*ITAG) Solyc01g008700.2.1 (e_value=7e-47) genomic_reference:SL2.40ch01 gene_region:2746555-2751492 transcript_region:SL2.40ch01:2746555..2751492- functional_description:"cDNA clone 001-102-C05 full insert sequence (AHRD V1 **-- B7E7M9_ORYSJ)"; NbS00043995g0003.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|929; (*GB) gi|225448703|ref|XP_002275275.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Vitis vinifera];; (*SWP) sp|C0LGE4|Y1124_ARATH (e_value=1e-123) Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1;; (*TAIR) AT3G56370.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc06g048620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27865594-27869299 transcript_region:SL2.40ch06:27865594..27869299+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00037546g0017.1 protein AED:0.10 eAED:0.10 QI:168|1|1|1|0.5|0.53|13|166|639; (*GB) gi|297591948|gb|ACJ05642.2| (e_value=0.0) potassium channel protein NKT5 [Nicotiana tabacum];; (*SWP) sp|P92960|KAT3_ARATH (e_value=0.0) Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1;; (*TAIR) AT4G32650.1 (e_value=0.0) | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel in Arabidopsis thaliana 3 | chr4:15751482-15754797 REVERSE LENGTH=662;; (*ITAG) Solyc01g010080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4800229-4810748 transcript_region:SL2.40ch01:4800229..4810748+ go_terms:GO:0005242,GO:0030551 functional_description:"Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 (AHRD V1 **** HCN4_MOUSE); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242,GO:0030551 NbS00037546g0016.1 protein AED:0.32 eAED:0.33 QI:0|0|0.25|1|0.66|0.75|4|0|256; (*GB) gi|49240345|gb|AAT58045.1| (e_value=1e-73) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=2e-34) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=1e-35) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00037546g0012.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|225457397|ref|XP_002284877.1| (e_value=1e-43) PREDICTED: uncharacterized protein LOC100262165 isoform 1 [Vitis vinifera];; (*TAIR) AT3G47490.1 (e_value=5e-39) | Symbols: | HNH endonuclease | chr3:17498337-17500731 FORWARD LENGTH=234;; (*ITAG) Solyc12g062670.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:51868639-51868947 transcript_region:SL2.40ch12:51868639..51868947+ functional_description:"HNH endonuclease domain-containing protein (Fragment) (AHRD V1 ***- C6F7M2_PSEMZ)"; NbS00037546g0018.1 protein AED:0.33 eAED:0.40 QI:0|0.33|0.25|1|0.66|0.75|4|238|85; (*GB) gi|225457397|ref|XP_002284877.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100262165 isoform 1 [Vitis vinifera];; (*TAIR) AT3G47490.3 (e_value=1e-33) | Symbols: | HNH endonuclease | chr3:17498454-17500731 FORWARD LENGTH=215; NbS00002251g0005.1 protein AED:0.41 eAED:0.74 QI:0|0|0|1|0|0|3|0|89; (*GB) gi|356538837|ref|XP_003537907.1| (e_value=3e-19) PREDICTED: CASP-like protein At1g49405-like [Glycine max]; NbS00012686g0004.1 protein AED:0.37 eAED:0.37 QI:58|1|1|1|1|0.5|2|0|172; (*ITAG) Solyc12g013540.1.1 (e_value=9e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4393942-4396738 transcript_region:SL2.40ch12:4393942..4396738+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038036g0006.1 protein AED:0.07 eAED:0.12 QI:0|1|0.8|1|1|1|5|363|451; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=3e-108) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-11) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G33620.4 (e_value=3e-65) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc08g077030.2.1 (e_value=2e-138) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00005707g0007.1 protein AED:0.04 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|297; (*GB) gi|167857805|gb|ACA03877.1| (e_value=3e-146) chloroplast zebra-necrosis protein [Nicotiana benthamiana];; (*TAIR) AT2G16800.1 (e_value=4e-111) | Symbols: | high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372;; (*ITAG) Solyc08g005980.2.1 (e_value=7e-130) genomic_reference:SL2.40ch08 gene_region:749599-755094 transcript_region:SL2.40ch08:749599..755094+ go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00005707g0010.1 protein AED:0.27 eAED:0.30 QI:0|0.75|0.4|1|0.75|0.6|5|0|124; (*GB) gi|237687577|gb|ACR14818.1| (e_value=9e-66) phosphatidylinositol synthase [Solanum tuberosum];; (*SWP) sp|Q8GUK6|PIS2_ARATH (e_value=1e-52) Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 OS=Arabidopsis thaliana GN=PIS2 PE=2 SV=2;; (*TAIR) AT4G38570.1 (e_value=8e-54) | Symbols: PIS2 | probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 | chr4:18031420-18033091 REVERSE LENGTH=225;; (*ITAG) Solyc08g005990.2.1 (e_value=2e-68) genomic_reference:SL2.40ch08 gene_region:755421-760761 transcript_region:SL2.40ch08:755421..760761- go_terms:GO:0003881 functional_description:"CDP-diacylglycerol--inositol 3-phosphatidyltransferase (Phosphatidylinositol synthase) (AHRD V1 **** Q0IIY3_XENTR); contains Interpro domain(s) IPR014387 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote "; GO:0003881 NbS00013175g0013.1 protein AED:0.12 eAED:0.12 QI:406|0.81|0.91|0.91|0.90|0.83|12|519|382; (*GB) gi|296081159|emb|CBI18185.3| (e_value=1e-161) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q06265|EXOS9_HUMAN (e_value=2e-53) Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3;; (*TAIR) AT3G60500.3 (e_value=2e-128) | Symbols: CER7 | 3'-5'-exoribonuclease family protein | chr3:22354245-22356440 FORWARD LENGTH=438;; (*ITAG) Solyc05g047420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58012355-58023466 transcript_region:SL2.40ch05:58012355..58023466+ go_terms:GO:0005515,GO:0000175 functional_description:"Exosome complex exonuclease RRP45 (AHRD V1 **-- C1BLN8_OSMMO); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 "; GO:0005515,GO:0000175 NbS00013175g0017.1 protein AED:0.27 eAED:0.27 QI:23|0.37|0.22|0.88|0.12|0.33|9|0|509; (*GB) gi|297734945|emb|CBI17179.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RWI9|AB15G_ARATH (e_value=0.0) ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2;; (*TAIR) AT3G21090.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr3:7391497-7394933 REVERSE LENGTH=691;; (*ITAG) Solyc11g065350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47868740-47875129 transcript_region:SL2.40ch11:47868740..47875129+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 15 (AHRD V1 ***- AB15G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016020,GO:0017111,GO:0016887 NbS00013175g0015.1 protein AED:0.16 eAED:0.19 QI:0|0.87|0.77|1|0.87|1|9|260|948; (*GB) gi|255544922|ref|XP_002513522.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g065340.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:47846173-47851492 transcript_region:SL2.40ch11:47846173..47851492- functional_description:"Unknown Protein (AHRD V1)"; NbS00013175g0001.1 protein AED:0.42 eAED:0.77 QI:0|0|0|0.66|1|1|3|0|297; (*GB) gi|147827140|emb|CAN70976.1| (e_value=2e-18) hypothetical protein VITISV_034763 [Vitis vinifera];; (*ITAG) Solyc01g059830.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:61474622-61478520 transcript_region:SL2.40ch01:61474622..61478520- go_terms:GO:0008152 functional_description:"Enoyl-CoA hydratase (AHRD V1 ***- C1K4P1_ELAOL); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00018725g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|609; (*GB) gi|224120492|ref|XP_002318342.1| (e_value=3e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q14684|RRP1B_HUMAN (e_value=2e-24) Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3;; (*TAIR) AT5G20600.1 (e_value=2e-78) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966345-6967943 REVERSE LENGTH=532;; (*ITAG) Solyc07g017940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:8626400-8628169 transcript_region:SL2.40ch07:8626400..8628169+ go_terms:GO:0030688 functional_description:"Ribosomal RNA processing protein 1 homolog B (AHRD V1 *--- RRP1B_HUMAN); contains Interpro domain(s) IPR010301 Nucleolar, Nop52 "; GO:0030688 NbS00022838g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|91; (*GB) gi|351724407|ref|NP_001235265.1| (e_value=2e-23) uncharacterized protein LOC100527636 [Glycine max];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=2e-22) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G74500.1 (e_value=2e-23) | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93;; (*ITAG) Solyc06g070910.2.1 (e_value=5e-29) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00022838g0007.1 protein AED:0.34 eAED:0.44 QI:0|0|0|1|0|0|3|0|123 NbS00037399g0010.1 protein AED:0.19 eAED:0.19 QI:180|1|1|1|0.77|0.6|10|491|200; (*GB) gi|135640|sp|P26357.1|TBP_SOLTU (e_value=2e-146) RecName: Full=TATA-box-binding protein; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=TATA-binding factor; AltName: Full=TATA-box factor; AltName: Full=Transcription initiation factor TFIID TBP subunit;; (*SWP) sp|P26357|TBP_SOLTU (e_value=6e-148) TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1;; (*TAIR) AT1G55520.2 (e_value=2e-140) | Symbols: TBP2, ATTBP2 | TATA binding protein 2 | chr1:20726150-20727483 REVERSE LENGTH=200;; (*ITAG) Solyc01g028930.2.1 (e_value=7e-149) genomic_reference:SL2.40ch01 gene_region:34805699-34816768 transcript_region:SL2.40ch01:34805699..34816768+ go_terms:GO:0003713 functional_description:"TATA-box binding protein (AHRD V1 ***- Q9ZTX5_PHAVU); contains Interpro domain(s) IPR000814 TATA-box binding "; GO:0003713 NbS00037399g0011.1 protein AED:0.24 eAED:0.24 QI:3|0.91|0.92|1|0.83|0.76|13|239|329; (*GB) gi|193290666|gb|ACF17641.1| (e_value=0.0) putative branched-chain alpha-keto acid dehydrogenase E1 beta subunit [Capsicum annuum];; (*SWP) sp|P35738|ODBB_RAT (e_value=1e-156) 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3;; (*TAIR) AT3G13450.1 (e_value=0.0) | Symbols: DIN4 | Transketolase family protein | chr3:4382340-4384295 REVERSE LENGTH=358;; (*ITAG) Solyc01g028900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33896708-33906524 transcript_region:SL2.40ch01:33896708..33906524- go_terms:GO:0008152 functional_description:"1-deoxy-D-xylulose-5-phosphate synthase (AHRD V1 **-- DXS_DESAP); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0008152 NbS00037399g0012.1 protein AED:0.37 eAED:0.37 QI:70|0.85|0.62|0.87|0.85|0.87|8|0|391; (*GB) gi|225440175|ref|XP_002283436.1| (e_value=0.0) PREDICTED: protein kinase and PP2C-like domain-containing protein isoform 1 [Vitis vinifera];; (*SWP) sp|Q5JJY4|P2C04_ORYSJ (e_value=5e-174) Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1;; (*TAIR) AT2G40860.1 (e_value=2e-161) | Symbols: | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein | chr2:17053747-17057108 REVERSE LENGTH=658;; (*ITAG) Solyc01g056690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:48822668-48837909 transcript_region:SL2.40ch01:48822668..48837909- go_terms:GO:0006468,GO:0003824 functional_description:"Kinase family protein (AHRD V1 ***- D7LFV3_ARALY); contains Interpro domain(s) IPR014045 Protein phosphatase 2C, N-terminal "; GO:0006468,GO:0003824 NbS00015109g0013.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|11|319|820; (*GB) gi|359491950|ref|XP_003634345.1| (e_value=0.0) PREDICTED: cirhin-like [Vitis vinifera];; (*SWP) sp|O60161|UTP4_SCHPO (e_value=9e-42) U3 small nucleolar RNA-associated protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp4 PE=2 SV=1;; (*TAIR) AT4G07410.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:4201465-4205136 REVERSE LENGTH=815;; (*ITAG) Solyc04g077680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60204549-60211710 transcript_region:SL2.40ch04:60204549..60211710+ go_terms:GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00015109g0018.1 protein AED:0.14 eAED:0.14 QI:161|0.92|0.85|1|0.76|0.78|14|230|574; (*GB) gi|225458880|ref|XP_002283423.1| (e_value=0.0) PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera];; (*SWP) sp|Q9FJL3|FKB65_ARATH (e_value=1e-177) Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1;; (*TAIR) AT5G48570.1 (e_value=1e-178) | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr5:19690746-19693656 REVERSE LENGTH=578;; (*ITAG) Solyc04g077660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60187227-60195929 transcript_region:SL2.40ch04:60187227..60195929+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00015109g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.25|0.2|1|0.5|0.6|5|0|360; (*GB) gi|107953720|gb|ABF85695.1| (e_value=1e-98) potassium channel [Nicotiana rustica];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=3e-88) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=2e-89) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=5e-98) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00005422g0006.1 protein AED:0.25 eAED:0.26 QI:0|1|1|1|1|1|5|186|304; (*GB) gi|255546463|ref|XP_002514291.1| (e_value=1e-126) signal peptidase I, putative [Ricinus communis];; (*SWP) sp|Q8H0W1|PLSP1_ARATH (e_value=2e-122) Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2;; (*TAIR) AT3G24590.1 (e_value=2e-123) | Symbols: PLSP1 | plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291;; (*ITAG) Solyc12g007120.1.1 (e_value=6e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1555500-1559696 transcript_region:SL2.40ch12:1555500..1559696+ go_terms:GO:0016020,GO:0016021 functional_description:"Signal peptidase I (AHRD V1 *-*- B1WP51_CYAA5); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0016020,GO:0016021 NbS00005422g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|303; (*GB) gi|359807063|ref|NP_001241341.1| (e_value=3e-83) uncharacterized protein LOC100818121 [Glycine max];; (*TAIR) AT3G24600.1 (e_value=4e-55) | Symbols: | Late embryogenesis abundant protein, group 2 | chr3:8972195-8974867 REVERSE LENGTH=506;; (*ITAG) Solyc03g120710.2.1 (e_value=4e-79) genomic_reference:SL2.40ch03 gene_region:63062243-63065253 transcript_region:SL2.40ch03:63062243..63065253+ functional_description:"Harpin-induced protein (AHRD V1 **-- B6TDG9_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00035482g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|1|1|4|0|410; (*GB) gi|22331208|ref|NP_188686.2| (e_value=0.0) purple acid phosphatase 18 [Arabidopsis thaliana];; (*SWP) sp|Q9LJU7|PPA18_ARATH (e_value=0.0) Purple acid phosphatase 18 OS=Arabidopsis thaliana GN=PAP18 PE=2 SV=1;; (*TAIR) AT3G20500.1 (e_value=0.0) | Symbols: ATPAP18, PAP18 | purple acid phosphatase 18 | chr3:7157926-7160244 FORWARD LENGTH=437;; (*ITAG) Solyc10g006300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:950380-955091 transcript_region:SL2.40ch10:950380..955091+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00035482g0012.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.66|1|1|1|3|272|97; (*GB) gi|225461013|ref|XP_002280849.1| (e_value=6e-48) PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera];; (*TAIR) AT1G50740.1 (e_value=2e-42) | Symbols: | Transmembrane proteins 14C | chr1:18807861-18808765 FORWARD LENGTH=119;; (*ITAG) Solyc07g064470.2.1 (e_value=5e-50) genomic_reference:SL2.40ch07 gene_region:63833709-63836015 transcript_region:SL2.40ch07:63833709..63836015- go_terms:GO:0016020 functional_description:"Transmembrane protein 14C (AHRD V1 ***- C3KI83_ANOFI); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00035482g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|7|377|251; (*GB) gi|255563947|ref|XP_002522973.1| (e_value=1e-163) Vacuolar sorting protein SNF8, putative [Ricinus communis];; (*SWP) sp|Q5M759|VP221_ARATH (e_value=1e-160) Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2;; (*TAIR) AT4G27040.4 (e_value=9e-162) | Symbols: VPS22 | EAP30/Vps36 family protein | chr4:13573061-13574576 REVERSE LENGTH=250;; (*ITAG) Solyc10g006320.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:960203-963954 transcript_region:SL2.40ch10:960203..963954- go_terms:GO:0003702,GO:0008134 functional_description:"Vacuolar sorting protein SNF8 (AHRD V1 ***- D0MSV1_PHYIN); contains Interpro domain(s) IPR016689 ESCRT-2 complex, Snf8 "; GO:0003702,GO:0008134 NbC23799319g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|350539497|ref|NP_001234664.1| (e_value=7e-32) mitogen-activated protein kinase 12 [Solanum lycopersicum];; (*SWP) sp|Q5SN53|MPK8_ORYSJ (e_value=3e-31) Mitogen-activated protein kinase 8 OS=Oryza sativa subsp. japonica GN=MPK8 PE=2 SV=2;; (*TAIR) AT2G42880.1 (e_value=1e-31) | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606;; (*ITAG) Solyc07g056350.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:61549395-61555184 transcript_region:SL2.40ch07:61549395..61555184+ go_terms:GO:0008339 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 **** B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008339 NbS00042548g0007.1 protein AED:0.11 eAED:0.15 QI:0|0|0.16|1|0.2|0.16|6|758|1072; (*GB) gi|225469045|ref|XP_002267070.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245966 [Vitis vinifera];; (*TAIR) AT4G23440.1 (e_value=0.0) | Symbols: | Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964;; (*ITAG) Solyc08g081260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61486528-61489521 transcript_region:SL2.40ch08:61486528..61489521+ go_terms:GO:0031224,GO:0017111 functional_description:"Tir-nbs resistance protein (AHRD V1 **-- B9GWT3_POPTR); contains Interpro domain(s) IPR000157 Toll-Interleukin receptor "; GO:0031224,GO:0017111 NbS00044673g0006.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0.5|0.66|3|0|660; (*GB) gi|224053877|ref|XP_002298024.1| (e_value=6e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=2e-67) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT4G11400.1 (e_value=2e-68) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr4:6938717-6940539 FORWARD LENGTH=573;; (*ITAG) Solyc08g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61515799-61521029 transcript_region:SL2.40ch08:61515799..61521029- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00044673g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.71|0.37|1|0.85|0.75|8|436|380; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=0.0) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|P29620|CDKD1_ORYSJ (e_value=7e-160) Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1;; (*TAIR) AT1G18040.1 (e_value=2e-157) | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent kinase D1;3 | chr1:6207128-6209299 REVERSE LENGTH=391;; (*ITAG) Solyc08g081280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00054998g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.33|0.14|0.85|0.33|0.71|7|0|191; (*GB) gi|357439041|ref|XP_003589797.1| (e_value=1e-122) Serine/threonine protein phosphatase [Medicago truncatula];; (*SWP) sp|Q9LHE7|FYPP3_ARATH (e_value=6e-124) Phytochrome-associated serine/threonine-protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1;; (*TAIR) AT3G19980.1 (e_value=5e-125) | Symbols: ATFYPP3, EMB2736, STPP, FYPP3 | flower-specific, phytochrome-associated protein phosphatase 3 | chr3:6962008-6964761 FORWARD LENGTH=303;; (*ITAG) Solyc03g019900.2.1 (e_value=2e-125) genomic_reference:SL2.40ch03 gene_region:6792278-6799634 transcript_region:SL2.40ch03:6792278..6799634+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** C6TK28_SOYBN); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00015415g0009.1 protein AED:0.20 eAED:0.20 QI:183|0.91|0.87|1|0.73|0.76|47|158|2264; (*GB) gi|359488185|ref|XP_002279980.2| (e_value=0.0) PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera];; (*SWP) sp|Q8C547|HTR5B_MOUSE (e_value=2e-47) HEAT repeat-containing protein 5B OS=Mus musculus GN=Heatr5b PE=2 SV=3;; (*TAIR) AT1G67140.1 (e_value=0.0) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2221;; (*ITAG) Solyc02g085810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00038337g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|472; (*GB) gi|255553015|ref|XP_002517550.1| (e_value=0.0) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q0WP36|MOT2_ARATH (e_value=2e-180) Molybdate transporter 2 OS=Arabidopsis thaliana GN=MOT2 PE=1 SV=2;; (*TAIR) AT1G80310.1 (e_value=0.0) | Symbols: | sulfate transmembrane transporters | chr1:30194951-30196345 FORWARD LENGTH=464;; (*ITAG) Solyc03g119930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62520142-62521518 transcript_region:SL2.40ch03:62520142..62521518- go_terms:GO:0015116,GO:0015098 functional_description:"Sulfate transporter like protein (AHRD V1 **** Q0WP36_ARATH); contains Interpro domain(s) IPR011547 Sulphate transporter "; GO:0015116,GO:0015098 NbS00038337g0010.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|4|0|479; (*GB) gi|297743367|emb|CBI36234.3| (e_value=4e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M9E2|PPR45_ARATH (e_value=4e-129) Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1;; (*TAIR) AT1G15510.1 (e_value=3e-130) | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5329111-5331711 FORWARD LENGTH=866;; (*ITAG) Solyc03g119950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62528256-62530886 transcript_region:SL2.40ch03:62528256..62530886- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KDG7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00038337g0012.1 protein AED:0.03 eAED:0.03 QI:238|1|0.85|1|0.5|0.57|7|0|794; (*GB) gi|359482658|ref|XP_002285224.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251511 [Vitis vinifera];; (*TAIR) AT3G15550.1 (e_value=0.0) | Symbols: | unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). | chr3:5267351-5270095 FORWARD LENGTH=729;; (*ITAG) Solyc03g119940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62523753-62527315 transcript_region:SL2.40ch03:62523753..62527315+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038337g0011.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|6|0|615; (*GB) gi|359482660|ref|XP_002285225.2| (e_value=8e-117) PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9M9E2|PPR45_ARATH (e_value=5e-108) Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1;; (*TAIR) AT1G15510.1 (e_value=4e-109) | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5329111-5331711 FORWARD LENGTH=866;; (*ITAG) Solyc03g119950.1.1 (e_value=9e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62528256-62530886 transcript_region:SL2.40ch03:62528256..62530886- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KDG7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00006036g0001.1 protein AED:0.23 eAED:0.27 QI:0|0.75|0.6|1|1|1|5|414|430; (*GB) gi|255579574|ref|XP_002530628.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5Z8P0|P2C60_ORYSJ (e_value=0.0) Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc02g083420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41410375-41413887 transcript_region:SL2.40ch02:41410375..41413887- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B6SYG9_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00006036g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.66|0.83|0.8|0.66|6|553|259; (*GB) gi|301070456|gb|ADK55590.1| (e_value=9e-154) plastid NEP interaction protein [Nicotiana benthamiana];; (*SWP) sp|Q8GT74|NIP2_ARATH (e_value=8e-109) NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1;; (*TAIR) AT2G17730.1 (e_value=6e-110) | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7704142-7705312 FORWARD LENGTH=241;; (*ITAG) Solyc02g083400.2.1 (e_value=2e-141) genomic_reference:SL2.40ch02 gene_region:41401809-41403535 transcript_region:SL2.40ch02:41401809..41403535+ go_terms:GO:0005515 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515 NbS00006036g0010.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.71|1|0.66|0.57|7|133|886; (*GB) gi|255548572|ref|XP_002515342.1| (e_value=0.0) amine oxidase, putative [Ricinus communis];; (*SWP) sp|Q9SR05|ANX1_ARATH (e_value=6e-56) Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1;; (*TAIR) AT3G09580.1 (e_value=2e-167) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:2942614-2944047 REVERSE LENGTH=477;; (*ITAG) Solyc02g083410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41405399-41409718 transcript_region:SL2.40ch02:41405399..41409718+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017542g0005.1 protein AED:0.08 eAED:0.08 QI:104|0.66|0.5|1|1|1|4|125|285; (*GB) gi|94962424|gb|ABF48527.1| (e_value=1e-178) cell wall peroxidase [Capsicum annuum];; (*SWP) sp|Q02200|PERX_NICSY (e_value=1e-173) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=2e-121) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00017542g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|353|228; (*GB) gi|77416941|gb|ABA81866.1| (e_value=2e-119) unknown [Solanum tuberosum];; (*SWP) sp|O60830|TI17B_HUMAN (e_value=4e-41) Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1;; (*TAIR) AT1G20350.1 (e_value=5e-73) | Symbols: ATTIM17-1, TIM17-1 | translocase inner membrane subunit 17-1 | chr1:7043737-7044393 FORWARD LENGTH=218;; (*ITAG) Solyc06g082270.1.1 (e_value=1e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00036880g0012.1 protein AED:0.24 eAED:0.24 QI:0|1|0.85|1|1|1|7|252|639; (*GB) gi|224090013|ref|XP_002308906.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZA4|PMT7_ARATH (e_value=0.0) Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1;; (*TAIR) AT5G04060.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:1099271-1101810 FORWARD LENGTH=600;; (*ITAG) Solyc10g079450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60309915-60318019 transcript_region:SL2.40ch10:60309915..60318019+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00031883g0004.1 protein AED:0.27 eAED:0.27 QI:126|0.85|0.87|1|0.85|0.62|8|385|293; (*GB) gi|350535262|ref|NP_001234441.1| (e_value=2e-154) peptide deformylase 1B, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q9FV54|DEF1B_SOLLC (e_value=4e-156) Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum GN=PDF1B PE=2 SV=1;; (*TAIR) AT5G14660.2 (e_value=8e-112) | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B | chr5:4727129-4728671 REVERSE LENGTH=273;; (*ITAG) Solyc02g086680.2.1 (e_value=3e-157) genomic_reference:SL2.40ch02 gene_region:43906309-43909739 transcript_region:SL2.40ch02:43906309..43909739- go_terms:GO:0005515,GO:0008463 functional_description:"Peptide deformylase-like (AHRD V1 **** Q5VNP3_ORYSJ); contains Interpro domain(s) IPR000181 Formylmethionine deformylase "; GO:0005515,GO:0008463 NbS00016082g0005.1 protein AED:0.35 eAED:0.35 QI:0|1|0.90|1|1|1|11|0|564; (*GB) gi|356567568|ref|XP_003551990.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-80) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G26370.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:9656886-9659741 FORWARD LENGTH=557;; (*ITAG) Solyc05g013730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7030827-7039619 transcript_region:SL2.40ch05:7030827..7039619- functional_description:"Auxin-independent growth protein (Fragment) (AHRD V1 *--- Q676V9_HYAOR); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00033721g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|225459852|ref|XP_002284837.1| (e_value=2e-87) PREDICTED: uncharacterized protein LOC100245335 [Vitis vinifera];; (*TAIR) AT1G76240.1 (e_value=2e-74) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr1:28602949-28603875 REVERSE LENGTH=308;; (*ITAG) Solyc04g082270.2.1 (e_value=6e-133) genomic_reference:SL2.40ch04 gene_region:63587629-63589005 transcript_region:SL2.40ch04:63587629..63589005- functional_description:"CM0216.210.nc protein (AHRD V1 ***- B0BLH4_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00047227g0004.1 protein AED:0.03 eAED:0.27 QI:0|1|0.5|1|1|1|2|44|249 NbS00015079g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|107; (*ITAG) Solyc07g049640.2.1 (e_value=2e-17) genomic_reference:SL2.40ch07 gene_region:57302297-57302755 transcript_region:SL2.40ch07:57302297..57302755- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00031391g0002.1 protein AED:0.35 eAED:0.35 QI:602|1|1|1|0.42|0.5|8|620|168; (*GB) gi|225457217|ref|XP_002284065.1| (e_value=7e-69) PREDICTED: phosphoserine phosphatase, chloroplastic [Vitis vinifera];; (*SWP) sp|O82796|SERB_ARATH (e_value=8e-53) Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2;; (*TAIR) AT1G18640.2 (e_value=6e-54) | Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416524-6418245 REVERSE LENGTH=295;; (*ITAG) Solyc06g076510.2.1 (e_value=9e-105) genomic_reference:SL2.40ch06 gene_region:43933252-43936499 transcript_region:SL2.40ch06:43933252..43936499+ go_terms:GO:0004647,GO:0005515 functional_description:"Phosphoserine phosphatase (AHRD V1 **** B6SU38_MAIZE); contains Interpro domain(s) IPR004469 Phosphoserine phosphatase SerB "; GO:0004647,GO:0005515 NbS00031391g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|300827454|gb|ADK36667.1| (e_value=8e-81) cytosolic class I small heat shock protein 3A [Nicotiana tabacum];; (*SWP) sp|O82012|HSP12_SOLPE (e_value=2e-74) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT1G07400.1 (e_value=2e-65) | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157;; (*ITAG) Solyc06g076560.1.1 (e_value=5e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43949614-43950078 transcript_region:SL2.40ch06:43949614..43950078+ go_terms:GO:0051082 functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00020031g0005.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|485; (*GB) gi|54288759|gb|AAV31755.1| (e_value=0.0) S-adenosyl-L-homocysteine hydrolase, partial [Nicotiana tabacum];; (*SWP) sp|P68173|SAHH_TOBAC (e_value=0.0) Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1;; (*TAIR) AT4G13940.1 (e_value=0.0) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485;; (*ITAG) Solyc12g098500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64330129-64332305 transcript_region:SL2.40ch12:64330129..64332305+ go_terms:GO:0006730,GO:0008152 functional_description:"Adenosylhomocysteinase (AHRD V1 ***- A1KYB0_TOBAC); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0006730,GO:0008152 NbS00059223g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|1|1|4|0|284; (*GB) gi|225447089|ref|XP_002270622.1| (e_value=2e-72) PREDICTED: condensin complex subunit 2-like [Vitis vinifera];; (*TAIR) AT2G32590.1 (e_value=3e-65) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). | chr2:13829420-13833209 REVERSE LENGTH=671;; (*ITAG) Solyc07g049680.2.1 (e_value=7e-133) genomic_reference:SL2.40ch07 gene_region:57358325-57364429 transcript_region:SL2.40ch07:57358325..57364429+ go_terms:GO:0005515 functional_description:"Condensin complex subunit 2 (AHRD V1 ***- Q564K3_ARATH); contains Interpro domain(s) IPR008418 Barren "; GO:0005515 NbS00001881g0007.1 protein AED:0.12 eAED:0.34 QI:0|0|0|1|0|0.2|5|0|306; (*GB) gi|1705805|sp|P52403.1|CHI1_SOLTU (e_value=2e-85) RecName: Full=Endochitinase 1; Flags: Precursor;; (*SWP) sp|P52403|CHI1_SOLTU (e_value=7e-87) Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1;; (*TAIR) AT3G12500.1 (e_value=4e-77) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g055810.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52891942-52893092 transcript_region:SL2.40ch10:52891942..52893092- go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR018371 Chitin-binding, type 1, conserved site IPR000726 Glycoside hydrolase, family 19, catalytic IPR001002 Chitin-binding, type 1 "; GO:0008843 NbS00022530g0003.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.25|1|1|4|69|161 NbS00025928g0005.1 protein AED:0.04 eAED:0.04 QI:1008|1|1|1|0.8|0.83|6|332|506; (*GB) gi|384872601|gb|AFI25186.1| (e_value=0.0) putative beta-D-xylosidase [Nicotiana tabacum];; (*SWP) sp|Q9LXA8|BXL6_ARATH (e_value=4e-170) Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1;; (*TAIR) AT5G10560.1 (e_value=3e-171) | Symbols: | Glycosyl hydrolase family protein | chr5:3336335-3339351 REVERSE LENGTH=792;; (*ITAG) Solyc02g091680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47492981-47497119 transcript_region:SL2.40ch02:47492981..47497119- go_terms:GO:0046556,GO:0009044 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0046556,GO:0009044 NbS00000071g0006.1 protein AED:0.18 eAED:0.18 QI:331|0.66|0.92|0.92|0.58|0.69|13|710|487; (*GB) gi|356516045|ref|XP_003526707.1| (e_value=0.0) PREDICTED: splicing factor 3A subunit 3-like [Glycine max];; (*SWP) sp|Q12874|SF3A3_HUMAN (e_value=5e-86) Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1;; (*TAIR) AT5G06160.1 (e_value=8e-142) | Symbols: ATO | splicing factor-related | chr5:1862623-1866298 REVERSE LENGTH=504;; (*ITAG) Solyc03g083430.2.1 (e_value=2e-133) genomic_reference:SL2.40ch03 gene_region:46843789-46852108 transcript_region:SL2.40ch03:46843789..46852108- go_terms:GO:0005515 functional_description:"Splicing factor 3a subunit 3 (AHRD V1 ***- D8TLN4_VOLCA); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005515 NbS00000071g0009.1 protein AED:0.34 eAED:0.34 QI:132|0.33|0.75|1|0|0.75|4|270|96; (*GB) gi|225455094|ref|XP_002267997.1| (e_value=8e-26) PREDICTED: vesicle transport protein SFT2B [Vitis vinifera];; (*TAIR) AT5G24170.1 (e_value=8e-14) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:8189744-8191355 REVERSE LENGTH=163;; (*ITAG) Solyc03g117000.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:60314446-60322820 transcript_region:SL2.40ch03:60314446..60322820+ go_terms:GO:0005515 functional_description:"Vesicle transport protein SFT2A (AHRD V1 **-- C3KJB6_ANOFI); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0005515 NbS00019771g0004.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|177; (*GB) gi|42557351|dbj|BAD11071.1| (e_value=5e-50) hin1 like protein [Capsicum chinense];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=2e-16) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT5G06320.1 (e_value=2e-35) | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1931016-1931711 REVERSE LENGTH=231;; (*ITAG) Solyc01g007240.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:1808368-1809054 transcript_region:SL2.40ch01:1808368..1809054+ functional_description:"NHL3 (Fragment) (AHRD V1 **-- B0ZVP8_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00030176g0003.1 protein AED:0.15 eAED:0.16 QI:171|0.95|0.95|1|0.95|0.95|21|664|719; (*GB) gi|359474143|ref|XP_002280701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249628 [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=2e-102) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT4G10730.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2932902-2942562 transcript_region:SL2.40ch08:2932902..2942562- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012719g0206.1 protein AED:0.05 eAED:0.05 QI:395|0.8|0.83|1|1|1|6|603|326 NbS00005563g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|68; (*GB) gi|57013958|ref|YP_173430.1| (e_value=2e-30) hypothetical protein NitaMp091 [Nicotiana tabacum]; NbS00012345g0001.1 protein AED:0.34 eAED:0.41 QI:0|0.5|0.66|1|1|1|3|0|240; (*GB) gi|388507094|gb|AFK41613.1| (e_value=5e-82) unknown [Lotus japonicus];; (*SWP) sp|O48671|RER1B_ARATH (e_value=4e-75) Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2;; (*TAIR) AT2G21600.1 (e_value=3e-76) | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195;; (*ITAG) Solyc01g109770.2.1 (e_value=5e-97) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00012345g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|556; (*GB) gi|359481931|ref|XP_002268663.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc10g083950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62970502-62972211 transcript_region:SL2.40ch10:62970502..62972211- functional_description:"Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbC24729591g0004.1 protein AED:0.03 eAED:0.07 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|359497525|ref|XP_003635553.1| (e_value=5e-65) PREDICTED: tubulin alpha-1 chain-like, partial [Vitis vinifera];; (*SWP) sp|P33623|TBA1_ANEPH (e_value=5e-64) Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1;; (*TAIR) AT1G50010.1 (e_value=2e-64) | Symbols: TUA2 | tubulin alpha-2 chain | chr1:18517737-18519729 FORWARD LENGTH=450;; (*ITAG) Solyc12g088180.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62067338-62068021 transcript_region:SL2.40ch12:62067338..62068021+ go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin alpha-7 chain (AHRD V1 ***- B9IJV8_POPTR); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0005874,GO:0043234 NbS00034995g0002.1 protein AED:0.23 eAED:0.23 QI:37|0|0|0.5|1|1|2|0|106; (*GB) gi|308799807|ref|XP_003074685.1| (e_value=1e-50) Histone H4 (ISS) [Ostreococcus tauri];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=3e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=3e-53) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=2e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00034995g0112.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|181 NbS00034995g0109.1 protein AED:0.00 eAED:0.00 QI:83|1|1|1|1|1|6|356|707 NbS00034995g0113.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|0|0|3|0|189 NbS00020593g0003.1 protein AED:0.00 eAED:0.00 QI:561|0.66|0.75|1|0.33|0.75|4|545|386; (*GB) gi|302777037|gb|ADL70202.1| (e_value=8e-129) ABRE binding factor [Solanum tuberosum];; (*SWP) sp|Q9M7Q4|AI5L5_ARATH (e_value=1e-82) ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1;; (*TAIR) AT1G45249.1 (e_value=1e-83) | Symbols: ABF2, AREB1, ATAREB1 | abscisic acid responsive elements-binding factor 2 | chr1:17165420-17167415 REVERSE LENGTH=416;; (*ITAG) Solyc04g078840.2.1 (e_value=2e-131) genomic_reference:SL2.40ch04 gene_region:61094101-61097408 transcript_region:SL2.40ch04:61094101..61097408- go_terms:GO:0003700,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700,GO:0010843 NbS00020593g0010.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|203; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-64) hypothetical protein [Nicotiana tabacum]; NbS00040793g0004.1 protein AED:0.21 eAED:0.21 QI:186|0.55|0.6|1|0.66|0.7|10|0|933; (*GB) gi|255544922|ref|XP_002513522.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g065340.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:47846173-47851492 transcript_region:SL2.40ch11:47846173..47851492- functional_description:"Unknown Protein (AHRD V1)"; NbS00016678g0003.1 protein AED:0.05 eAED:0.15 QI:0|0|0|1|0|0|3|0|158; (*GB) gi|302142381|emb|CBI19584.3| (e_value=4e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q75H81|SPZXA_ORYSJ (e_value=6e-20) Serpin-ZXA OS=Oryza sativa subsp. japonica GN=Os03g0610650 PE=1 SV=1;; (*TAIR) AT3G45220.1 (e_value=1e-14) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr3:16564881-16566330 REVERSE LENGTH=393;; (*ITAG) Solyc04g079480.2.1 (e_value=4e-25) genomic_reference:SL2.40ch04 gene_region:61543950-61545698 transcript_region:SL2.40ch04:61543950..61545698- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00039571g0008.1 protein AED:0.02 eAED:0.02 QI:18|0|0|1|1|1|2|0|290; (*GB) gi|357465137|ref|XP_003602850.1| (e_value=6e-74) Transcription factor bHLH96 [Medicago truncatula];; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=3e-64) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=2e-65) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc04g074810.2.1 (e_value=7e-83) genomic_reference:SL2.40ch04 gene_region:58316431-58320023 transcript_region:SL2.40ch04:58316431..58320023- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00027305g0007.1 protein AED:0.00 eAED:0.00 QI:33|1|1|1|1|1|7|230|172; (*GB) gi|225448398|ref|XP_002269398.1| (e_value=4e-28) PREDICTED: high mobility group B protein 1 isoform 1 [Vitis vinifera];; (*SWP) sp|O49595|HMGB1_ARATH (e_value=8e-27) High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1;; (*TAIR) AT3G51880.4 (e_value=4e-28) | Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161;; (*ITAG) Solyc02g082700.2.1 (e_value=8e-18) genomic_reference:SL2.40ch02 gene_region:40932829-40934370 transcript_region:SL2.40ch02:40932829..40934370- go_terms:GO:0003682,GO:0030527 functional_description:"High mobility group protein (AHRD V1 **-- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003682,GO:0030527 NbS00027305g0008.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|284; (*GB) gi|110377766|gb|ABG73415.1| (e_value=0.0) chloroplast pigment-binding protein CP29 [Nicotiana tabacum];; (*SWP) sp|Q9XF88|CB4B_ARATH (e_value=4e-168) Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1;; (*TAIR) AT3G08940.2 (e_value=3e-169) | Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287;; (*ITAG) Solyc09g014520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6145784-6147813 transcript_region:SL2.40ch09:6145784..6147813- go_terms:GO:0005515 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 **** CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515 NbS00014457g0014.1 protein AED:0.17 eAED:0.18 QI:0|0.71|0.62|1|0.28|0.37|8|613|618; (*GB) gi|359486016|ref|XP_002264549.2| (e_value=1e-111) PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Vitis vinifera];; (*SWP) sp|Q39008|M3K1_ARATH (e_value=2e-86) Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2;; (*TAIR) AT4G08500.1 (e_value=1e-87) | Symbols: MEKK1, ATMEKK1, MAPKKK8, ARAKIN | MAPK/ERK kinase kinase 1 | chr4:5404272-5407062 REVERSE LENGTH=608;; (*ITAG) Solyc01g104530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84745224-84751406 transcript_region:SL2.40ch01:84745224..84751406- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00014457g0012.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|0.8|0.66|6|43|502; (*GB) gi|296081475|emb|CBI19998.3| (e_value=3e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9F0|WRKY9_ARATH (e_value=2e-67) Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1;; (*TAIR) AT1G68150.1 (e_value=1e-68) | Symbols: WRKY9, ATWRKY9 | WRKY DNA-binding protein 9 | chr1:25543970-25545615 FORWARD LENGTH=374;; (*ITAG) Solyc01g104550.2.1 (e_value=4e-176) genomic_reference:SL2.40ch01 gene_region:84779786-84782183 transcript_region:SL2.40ch01:84779786..84782183+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 32 (AHRD V1 *-*- Q6IEP9_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00014457g0013.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.28|1|1|1|7|558|682; (*GB) gi|359485945|ref|XP_002265987.2| (e_value=8e-65) PREDICTED: uncharacterized protein LOC100241871 [Vitis vinifera];; (*TAIR) AT1G36990.1 (e_value=1e-30) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581;; (*ITAG) Solyc01g104540.2.1 (e_value=2e-174) genomic_reference:SL2.40ch01 gene_region:84760416-84766136 transcript_region:SL2.40ch01:84760416..84766136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015019g0003.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|0|0|2|0|106 NbS00014823g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|0.75|4|0|261; (*GB) gi|296088981|emb|CBI38684.3| (e_value=8e-34) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g009320.2.1 (e_value=7e-80) genomic_reference:SL2.40ch10 gene_region:3390698-3395700 transcript_region:SL2.40ch10:3390698..3395700- functional_description:"Unknown Protein (AHRD V1)"; NbC24157441g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|75; (*GB) gi|587562|emb|CAA56520.1| (e_value=4e-41) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|P29677|MPPA_SOLTU (e_value=3e-40) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.1 (e_value=2e-34) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323692-19326771 REVERSE LENGTH=503;; (*ITAG) Solyc12g008630.1.1 (e_value=5e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00027986g0004.1 protein AED:0.11 eAED:0.14 QI:125|0.85|0.93|1|0.85|0.8|15|0|841; (*GB) gi|359472780|ref|XP_002275485.2| (e_value=0.0) PREDICTED: probable RNA-binding protein 19-like [Vitis vinifera];; (*SWP) sp|Q4PC17|MRD1_USTMA (e_value=7e-138) Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1;; (*TAIR) AT4G19610.1 (e_value=0.0) | Symbols: | nucleotide binding;nucleic acid binding;RNA binding | chr4:10677482-10681623 FORWARD LENGTH=816;; (*ITAG) Solyc02g081940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40279015-40286579 transcript_region:SL2.40ch02:40279015..40286579+ go_terms:GO:0004386,GO:0003729 functional_description:"RNA binding protein (AHRD V1 **** D8LH81_ECTSI); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0004386,GO:0003729 NbS00027986g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|167; (*GB) gi|297838037|ref|XP_002886900.1| (e_value=1e-51) cytochrome b6/f complex subunit IV [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q0G9T1|PETD_DAUCA (e_value=3e-53) Cytochrome b6-f complex subunit 4 OS=Daucus carota GN=petD PE=3 SV=1;; (*ITAG) ATCG00730.1 (e_value=3e-54) | Symbols: PETD | photosynthetic electron transfer D | chrC:76481-77672 FORWARD LENGTH=160;; (*ITAG) Solyc01g007540.2.1 (e_value=4e-54) genomic_reference:SL2.40ch01 gene_region:1874669-1875351 transcript_region:SL2.40ch01:1874669..1875351+ go_terms:GO:0016020,GO:0042651 functional_description:"Cytochrome b6-f complex subunit 4 (AHRD V1 ***- A1XFY6_NUPAD); contains Interpro domain(s) IPR005870 Cytochrome b6/f complex, subunit IV "; GO:0016020,GO:0042651 NbS00027986g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|11465990|ref|NP_054532.1| (e_value=1e-83) RNA polymerase alpha subunit [Nicotiana tabacum];; (*SWP) sp|P06269|RPOA_TOBAC (e_value=3e-85) DNA-directed RNA polymerase subunit alpha OS=Nicotiana tabacum GN=rpoA PE=3 SV=1;; (*ITAG) ATCG00740.1 (e_value=3e-72) | Symbols: RPOA | RNA polymerase subunit alpha | chrC:77901-78890 REVERSE LENGTH=329;; (*ITAG) Solyc01g007560.2.1 (e_value=4e-85) genomic_reference:SL2.40ch01 gene_region:1875492-1876368 transcript_region:SL2.40ch01:1875492..1876368- go_terms:GO:0006350,GO:0006351 functional_description:"DNA-directed RNA polymerase subunit alpha (AHRD V1 ***- D3WBC7_9BORA); contains Interpro domain(s) IPR011773 DNA-directed RNA polymerase, alpha subunit "; GO:0006350,GO:0006351 NbS00021774g0003.1 protein AED:0.06 eAED:0.06 QI:90|1|1|1|1|1|4|265|411; (*GB) gi|225445480|ref|XP_002285159.1| (e_value=0.0) PREDICTED: xylosyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q5QQ56|XYLT1_CANFA (e_value=9e-20) Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1;; (*TAIR) AT5G15050.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc12g006490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1001341-1005831 transcript_region:SL2.40ch12:1001341..1005831- go_terms:GO:0016020 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-- B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016020 NbS00017789g0019.1 protein AED:0.00 eAED:0.00 QI:197|1|1|1|0.66|0.5|4|325|781; (*GB) gi|359484356|ref|XP_002280856.2| (e_value=8e-91) PREDICTED: uncharacterized protein LOC100250746 [Vitis vinifera];; (*ITAG) Solyc12g007140.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1578429-1581743 transcript_region:SL2.40ch12:1578429..1581743- functional_description:"Genomic DNA chromosome 3 P1 clone MSD24 (AHRD V1 *-*- Q9LJ43_ARATH)"; NbS00017789g0006.1 protein AED:0.21 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|232 NbS00017789g0024.1 protein AED:0.24 eAED:0.24 QI:15|0|0|0.8|0.25|0.6|5|0|176; (*GB) gi|225445204|ref|XP_002284308.1| (e_value=2e-23) PREDICTED: probable protein ABIL5 [Vitis vinifera];; (*ITAG) Solyc12g007160.1.1 (e_value=5e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1591341-1593804 transcript_region:SL2.40ch12:1591341..1593804- functional_description:"Protein ABIL1 (AHRD V1 *--- B6TCZ2_MAIZE)"; NbS00017789g0026.1 protein AED:0.39 eAED:0.39 QI:196|0.85|0.75|0.87|0.57|0.5|8|0|272; (*GB) gi|224119792|ref|XP_002331162.1| (e_value=3e-151) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20120.1 (e_value=4e-144) | Symbols: COV1 | Protein of unknown function (DUF502) | chr2:8687568-8689321 REVERSE LENGTH=268;; (*ITAG) Solyc12g007130.1.1 (e_value=1e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1570078-1576401 transcript_region:SL2.40ch12:1570078..1576401- functional_description:"Integral membrane protein (AHRD V1 **-- A8JE84_CHLRE); contains Interpro domain(s) IPR007462 Protein of unknown function DUF502 "; NbS00017789g0028.1 protein AED:0.01 eAED:0.01 QI:107|1|1|1|0.75|1|5|318|304; (*GB) gi|224119740|ref|XP_002331149.1| (e_value=2e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H0W1|PLSP1_ARATH (e_value=1e-115) Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2;; (*TAIR) AT3G24590.1 (e_value=9e-117) | Symbols: PLSP1 | plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291;; (*ITAG) Solyc12g007120.1.1 (e_value=1e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1555500-1559696 transcript_region:SL2.40ch12:1555500..1559696+ go_terms:GO:0016020,GO:0016021 functional_description:"Signal peptidase I (AHRD V1 *-*- B1WP51_CYAA5); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0016020,GO:0016021 NbS00017789g0029.1 protein AED:0.09 eAED:0.09 QI:258|1|1|1|1|1|8|343|688; (*GB) gi|121308607|dbj|BAF43699.1| (e_value=0.0) PERK1-like protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc12g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1549690-1553261 transcript_region:SL2.40ch12:1549690..1553261+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00017789g0027.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0.33|1|0.2|0.33|6|0|478; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=3e-158) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT3G24620.1 (e_value=2e-159) | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotide exchange factor 8 | chr3:8980695-8982793 REVERSE LENGTH=523;; (*ITAG) Solyc12g007150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1587456-1591011 transcript_region:SL2.40ch12:1587456..1591011+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00023206g0003.1 protein AED:0.10 eAED:0.16 QI:0|0.16|0.14|1|0.16|0.28|7|0|378; (*GB) gi|302144188|emb|CBI23315.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84W80|FBL42_ARATH (e_value=3e-14) F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2;; (*TAIR) AT3G03360.1 (e_value=2e-15) | Symbols: | F-box/RNI-like superfamily protein | chr3:795218-796918 FORWARD LENGTH=481;; (*ITAG) Solyc04g057950.1.1 (e_value=8e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00005974g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|296083848|emb|CBI24236.3| (e_value=3e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12340.1 (e_value=4e-53) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220;; (*ITAG) Solyc04g057830.1.1 (e_value=5e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54085213-54085833 transcript_region:SL2.40ch04:54085213..54085833+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043542g0009.1 protein AED:0.35 eAED:0.35 QI:0|0.83|0.71|0.85|0.83|0.85|7|0|464; (*GB) gi|15594035|emb|CAC69852.1| (e_value=0.0) nucleic acid binding protein [Nicotiana tabacum];; (*SWP) sp|Q9SX79|RB47C_ARATH (e_value=8e-142) Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1;; (*TAIR) AT1G47490.1 (e_value=6e-143) | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17427182 FORWARD LENGTH=432;; (*ITAG) Solyc04g079310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61412534-61417774 transcript_region:SL2.40ch04:61412534..61417774+ go_terms:GO:0042802 functional_description:"RNA Binding Protein 47 (AHRD V1 **-* Q9LEB3_NICPL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00056162g0007.1 protein AED:0.40 eAED:0.56 QI:0|0|0|0.75|0|0|4|0|189; (*GB) gi|255568345|ref|XP_002525147.1| (e_value=2e-33) cysteine protease, putative [Ricinus communis];; (*SWP) sp|Q9FGR9|CEP1_ARATH (e_value=2e-26) KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1;; (*TAIR) AT1G06260.1 (e_value=2e-32) | Symbols: | Cysteine proteinases superfamily protein | chr1:1916449-1917585 FORWARD LENGTH=343;; (*ITAG) Solyc07g053460.2.1 (e_value=2e-46) genomic_reference:SL2.40ch07 gene_region:59227509-59229907 transcript_region:SL2.40ch07:59227509..59229907+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00029713g0110.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|0|0.5|2|0|70 NbS00029713g0105.1 protein AED:0.58 eAED:0.72 QI:0|0|0|0.75|1|1|4|0|75 NbS00059071g0006.1 protein AED:0.14 eAED:0.14 QI:263|0.83|0.71|1|0.66|0.42|7|263|727; (*GB) gi|359473964|ref|XP_002272972.2| (e_value=0.0) PREDICTED: oligopeptide transporter 7-like [Vitis vinifera];; (*SWP) sp|O82485|OPT7_ARATH (e_value=0.0) Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1;; (*TAIR) AT4G10770.1 (e_value=0.0) | Symbols: ATOPT7, OPT7 | oligopeptide transporter 7 | chr4:6628646-6632517 REVERSE LENGTH=766;; (*ITAG) Solyc08g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62776752-62780190 transcript_region:SL2.40ch08:62776752..62780190+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00044124g0008.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.25|1|1|4|0|403; (*ITAG) Solyc06g075140.2.1 (e_value=8e-16) genomic_reference:SL2.40ch06 gene_region:43016241-43019613 transcript_region:SL2.40ch06:43016241..43019613+ go_terms:GO:0004997,GO:0046983 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0004997,GO:0046983 NbS00044124g0010.1 protein AED:0.38 eAED:0.38 QI:135|1|1|1|0.2|0.16|6|367|164; (*GB) gi|225440807|ref|XP_002281866.1| (e_value=5e-100) PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1 [Vitis vinifera];; (*SWP) sp|Q9D0W5|PPIL1_MOUSE (e_value=7e-70) Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1;; (*TAIR) AT2G36130.1 (e_value=8e-96) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:15166863-15168259 FORWARD LENGTH=164;; (*ITAG) Solyc09g010190.2.1 (e_value=2e-108) genomic_reference:SL2.40ch09 gene_region:3581547-3586678 transcript_region:SL2.40ch09:3581547..3586678- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C6TF56_SOYBN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00062235g0003.1 protein AED:0.18 eAED:0.18 QI:88|0|0|0.8|0.75|0.4|5|0|656; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g115590.2.1 (e_value=5e-170) genomic_reference:SL2.40ch03 gene_region:59294426-59297565 transcript_region:SL2.40ch03:59294426..59297565- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH)"; NbS00057660g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|0.90|0.83|12|0|698; (*GB) gi|297743190|emb|CBI36057.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9D071|MMS19_MOUSE (e_value=3e-19) MMS19 nucleotide excision repair protein homolog OS=Mus musculus GN=Mms19 PE=1 SV=1;; (*TAIR) AT5G48120.1 (e_value=3e-139) | Symbols: | ARM repeat superfamily protein | chr5:19508210-19514774 REVERSE LENGTH=1134;; (*ITAG) Solyc03g121030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63310422-63322664 transcript_region:SL2.40ch03:63310422..63322664- go_terms:GO:0005737,GO:0005488 functional_description:"DNA repair/transcription protein Mms19-like protein (AHRD V1 *-*- Q6ZEY8_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005737,GO:0005488 NbS00003406g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.71|0.62|1|0.71|0.87|8|543|318; (*GB) gi|225459983|ref|XP_002267634.1| (e_value=8e-137) PREDICTED: uncharacterized protein LOC100251767 [Vitis vinifera];; (*TAIR) AT1G71340.1 (e_value=3e-114) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:26885556-26887321 REVERSE LENGTH=328;; (*ITAG) Solyc11g045050.1.1 (e_value=6e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36566386-36570365 transcript_region:SL2.40ch11:36566386..36570365- go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7KYU8_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0006629,GO:0006071 NbS00003406g0007.1 protein AED:0.34 eAED:0.38 QI:351|0.75|0.6|1|1|0.8|5|0|193; (*GB) gi|255561476|ref|XP_002521748.1| (e_value=3e-75) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G10140.1 (e_value=2e-73) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G33490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6322538-6324421 FORWARD LENGTH=183;; (*ITAG) Solyc11g045030.1.1 (e_value=1e-97) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36544957-36552164 transcript_region:SL2.40ch11:36544957..36552164+ functional_description:"Cytoplasmic membrane protein (AHRD V1 *-*- B6TYL5_MAIZE)"; NbS00010507g0004.1 protein AED:0.12 eAED:0.12 QI:231|1|1|1|0.91|1|13|475|861; (*GB) gi|225440608|ref|XP_002273795.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251006 [Vitis vinifera];; (*TAIR) AT3G09090.1 (e_value=0.0) | Symbols: DEX1 | defective in exine formation protein (DEX1) | chr3:2782912-2787552 REVERSE LENGTH=896;; (*ITAG) Solyc09g013130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5535592-5544894 transcript_region:SL2.40ch09:5535592..5544894+ go_terms:GO:0005509 functional_description:"Defective in exine formation (AHRD V1 **-- Q9FV30_ARATH); contains Interpro domain(s) IPR013517 FG-GAP "; GO:0005509 NbS00002695g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|218; (*GB) gi|359485422|ref|XP_002275844.2| (e_value=1e-47) PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=8e-39) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=6e-40) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc12g010810.1.1 (e_value=2e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3722630-3723262 transcript_region:SL2.40ch12:3722630..3723262+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00002695g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|306; (*GB) gi|255568343|ref|XP_002525146.1| (e_value=2e-108) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=4e-20) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT3G58120.1 (e_value=6e-99) | Symbols: ATBZIP61, BZIP61 | Basic-leucine zipper (bZIP) transcription factor family protein | chr3:21521289-21523078 REVERSE LENGTH=329;; (*ITAG) Solyc12g010800.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3715930-3717269 transcript_region:SL2.40ch12:3715930..3717269- go_terms:GO:0005634,GO:0006355 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00002695g0014.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|0|0.5|2|0|261; (*GB) gi|224149417|ref|XP_002336803.1| (e_value=1e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43062|PME_PRUPE (e_value=2e-68) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G26450.1 (e_value=5e-65) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614;; (*ITAG) Solyc00g023470.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00002695g0003.1 protein AED:0.38 eAED:0.62 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|357474537|ref|XP_003607553.1| (e_value=4e-21) Glucan endo-1 3-beta-glucosidase [Medicago truncatula];; (*SWP) sp|Q9M2K6|E13L1_ARATH (e_value=1e-18) Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2;; (*TAIR) AT3G58100.1 (e_value=1e-19) | Symbols: PDCB5 | plasmodesmata callose-binding protein 5 | chr3:21515397-21516329 REVERSE LENGTH=180;; (*ITAG) Solyc07g053430.2.1 (e_value=9e-23) genomic_reference:SL2.40ch07 gene_region:59191123-59194910 transcript_region:SL2.40ch07:59191123..59194910- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B4FGE4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00010722g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|356548405|ref|XP_003542592.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100786697 [Glycine max];; (*TAIR) AT3G52790.1 (e_value=8e-26) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr3:19566004-19566333 REVERSE LENGTH=109;; (*ITAG) Solyc10g083410.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62558105-62558422 transcript_region:SL2.40ch10:62558105..62558422- go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7LUB2_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00021453g0008.1 protein AED:0.20 eAED:0.22 QI:376|0.41|0.38|1|0.58|0.69|13|0|1676; (*GB) gi|296083821|emb|CBI24209.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12400.1 (e_value=0.0) | Symbols: | DNA binding;zinc ion binding;DNA binding | chr5:4013813-4021018 FORWARD LENGTH=1602;; (*ITAG) Solyc11g065140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47566526-47569626 transcript_region:SL2.40ch11:47566526..47569626+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--- Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00021453g0005.1 protein AED:0.25 eAED:0.25 QI:51|1|1|1|0.66|0.71|7|267|386; (*GB) gi|225436571|ref|XP_002278600.1| (e_value=3e-148) PREDICTED: uncharacterized protein LOC100244787 [Vitis vinifera];; (*SWP) sp|Q24K03|THUM1_BOVIN (e_value=1e-24) THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2 SV=1;; (*TAIR) AT5G12410.1 (e_value=3e-139) | Symbols: | THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376;; (*ITAG) Solyc11g065180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47592132-47599568 transcript_region:SL2.40ch11:47592132..47599568+ functional_description:"THUMP domain-containing protein (AHRD V1 ***- D7M518_ARALY); contains Interpro domain(s) IPR004114 THUMP "; NbS00026987g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|262; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=4e-89) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=4e-73) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=2e-85) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc01g087010.2.1 (e_value=1e-142) genomic_reference:SL2.40ch01 gene_region:73694401-73695811 transcript_region:SL2.40ch01:73694401..73695811+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- Q8A041_BACTN); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00008370g0011.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|352; (*GB) gi|7435386|pir||S46530 (e_value=0.0) polygalacturonase (EC 3.2.1.15) precursor (clone pC27.X and clone pC27.Y) - common tobacco (fragment);; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=0.0) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G07820.1 (e_value=2e-108) | Symbols: | Pectin lyase-like superfamily protein | chr3:2496597-2498028 REVERSE LENGTH=391;; (*ITAG) Solyc00g030510.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:12605204-12607615 transcript_region:SL2.40ch00:12605204..12607615+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00008370g0005.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.66|1|1|3|0|98 NbS00008370g0010.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|0.66|0.5|4|0|544; (*GB) gi|224082598|ref|XP_002306758.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28D01|WDR26_XENTR (e_value=3e-103) WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2;; (*TAIR) AT5G08560.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00017549g0013.1 protein AED:0.07 eAED:0.08 QI:0|0.33|0.14|0.85|0.33|0.28|7|0|797; (*GB) gi|225441834|ref|XP_002284060.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264133 [Vitis vinifera];; (*TAIR) AT2G41770.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF288) | chr2:17424549-17427042 REVERSE LENGTH=771;; (*ITAG) Solyc01g087600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74313470-74318705 transcript_region:SL2.40ch01:74313470..74318705+ functional_description:"Protein E03H4.4 partially confirmed by transcript evidence (AHRD V1 *-*- O17744_CAEEL)"; NbS00017549g0012.1 protein AED:0.29 eAED:0.29 QI:134|0.73|0.8|1|0.52|0.5|20|0|733; (*GB) gi|4160292|emb|CAA77084.1| (e_value=0.0) alpha-N-acetylglucosaminidase [Nicotiana tabacum];; (*SWP) sp|P54802|ANAG_HUMAN (e_value=1e-140) Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2;; (*TAIR) AT5G13690.1 (e_value=0.0) | Symbols: CYL1, NAGLU | alpha-N-acetylglucosaminidase family / NAGLU family | chr5:4415808-4420159 FORWARD LENGTH=806;; (*ITAG) Solyc01g087610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74319149-74336096 transcript_region:SL2.40ch01:74319149..74336096- go_terms:GO:0004561 functional_description:"Alpha-N-acetylglucosaminidase (AHRD V1 **** Q9ZR45_TOBAC); contains Interpro domain(s) IPR007781 Alpha-N-acetylglucosaminidase "; GO:0004561 NbS00024347g0001.1 protein AED:0.25 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|93280156|gb|ABF06706.1| (e_value=1e-40) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00010738g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.93|0.87|0.93|0.8|0.81|16|1947|546; (*GB) gi|225456493|ref|XP_002280913.1| (e_value=0.0) PREDICTED: protein BONZAI 1 [Vitis vinifera];; (*SWP) sp|Q5S1W2|BON2_ARATH (e_value=0.0) Protein BONZAI 2 OS=Arabidopsis thaliana GN=BON2 PE=1 SV=2;; (*TAIR) AT5G07300.1 (e_value=0.0) | Symbols: BON2 | Calcium-dependent phospholipid-binding Copine family protein | chr5:2299996-2303040 FORWARD LENGTH=586;; (*ITAG) Solyc06g068840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39045530-39056686 transcript_region:SL2.40ch06:39045530..39056686- go_terms:GO:0005544,GO:0005215 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544,GO:0005215 NbS00010738g0001.1 protein AED:0.31 eAED:0.37 QI:0|0.87|0.77|1|1|1|9|505|673; (*GB) gi|296085527|emb|CBI29259.3| (e_value=4e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|P37707|B2_DAUCA (e_value=7e-18) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G61910.2 (e_value=3e-43) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24861091-24863729 REVERSE LENGTH=738;; (*ITAG) Solyc06g068850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39057724-39063544 transcript_region:SL2.40ch06:39057724..39063544- functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00010738g0014.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|2|0|119; (*GB) gi|225456495|ref|XP_002280924.1| (e_value=7e-32) PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera];; (*SWP) sp|Q9FH54|EF114_ARATH (e_value=3e-27) Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1;; (*TAIR) AT5G61890.1 (e_value=2e-28) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:24852639-24853744 REVERSE LENGTH=248;; (*ITAG) Solyc06g068830.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39042342-39043537 transcript_region:SL2.40ch06:39042342..39043537- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00010738g0018.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|0|0|2|0|84 NbS00003990g0014.1 protein AED:0.17 eAED:0.17 QI:256|0.92|0.86|1|0.85|0.73|15|0|1278; (*GB) gi|297738627|emb|CBI27872.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29790.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211;; (*ITAG) Solyc07g040980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48762547-48775386 transcript_region:SL2.40ch07:48762547..48775386+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00003990g0012.1 protein AED:0.25 eAED:0.25 QI:186|1|1|1|1|1|7|296|219; (*GB) gi|225444838|ref|XP_002279095.1| (e_value=1e-96) PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like [Vitis vinifera];; (*SWP) sp|Q6DJE4|CPSF5_XENLA (e_value=4e-53) Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1;; (*TAIR) AT4G29820.1 (e_value=7e-97) | Symbols: CFIM-25, ATCFIM-25 | homolog of CFIM-25 | chr4:14596047-14597317 REVERSE LENGTH=222;; (*ITAG) Solyc07g041000.2.1 (e_value=2e-105) genomic_reference:SL2.40ch07 gene_region:48812782-48815986 transcript_region:SL2.40ch07:48812782..48815986- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- C9SP81_VERA1); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00003990g0017.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|0|0|4|0|159; (*GB) gi|7682432|gb|AAF67262.1|AF165186_1 (e_value=9e-95) MAP kinase kinase [Nicotiana tabacum];; (*SWP) sp|Q5QN75|M2K1_ORYSJ (e_value=1e-79) Mitogen-activated protein kinase kinase 1 OS=Oryza sativa subsp. japonica GN=MEK1 PE=1 SV=1;; (*TAIR) AT4G26070.1 (e_value=4e-79) | Symbols: MEK1, NMAPKK, ATMEK1, MKK1 | MAP kinase/ ERK kinase 1 | chr4:13217797-13219381 FORWARD LENGTH=308;; (*ITAG) Solyc12g009020.1.1 (e_value=5e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00003990g0016.1 protein AED:0.35 eAED:0.53 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|51471926|gb|AAU04433.1| (e_value=1e-31) MAPKK [Solanum lycopersicum];; (*SWP) sp|Q9S7U9|M2K2_ARATH (e_value=2e-25) Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2;; (*TAIR) AT4G29810.1 (e_value=2e-26) | Symbols: ATMKK2, MKK2, MK1 | MAP kinase kinase 2 | chr4:14593299-14595241 REVERSE LENGTH=363;; (*ITAG) Solyc12g009020.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00004903g0024.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.6|1|0.5|0.6|5|0|297; (*GB) gi|356542513|ref|XP_003539711.1| (e_value=6e-150) PREDICTED: aldo-keto reductase family 4 member C9-like [Glycine max];; (*SWP) sp|Q7G764|NADO1_ORYSJ (e_value=8e-81) Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1;; (*TAIR) AT5G62420.1 (e_value=8e-134) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:25064835-25066111 FORWARD LENGTH=316;; (*ITAG) Solyc03g093270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47900052-47902030 transcript_region:SL2.40ch03:47900052..47902030+ go_terms:GO:0055114 functional_description:"Reductase 2 (AHRD V1 ***- Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00004903g0017.1 protein AED:0.08 eAED:0.08 QI:0|0.9|0.90|1|0.9|0.80|21|182|1184; (*GB) gi|225466149|ref|XP_002269854.1| (e_value=0.0) PREDICTED: structural maintenance of chromosomes protein 2-1 [Vitis vinifera];; (*SWP) sp|Q9C5Y4|SMC21_ARATH (e_value=0.0) Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2;; (*TAIR) AT5G62410.1 (e_value=0.0) | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural maintenance of chromosomes 2 | chr5:25056308-25062436 FORWARD LENGTH=1175;; (*ITAG) Solyc03g093250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47882488-47886336 transcript_region:SL2.40ch03:47882488..47886336+ go_terms:GO:0005694 functional_description:"Structural maintenance of chromosomes 2 (AHRD V1 **-- Q52KE9_MOUSE); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0005694 NbS00004903g0019.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.4|1|0.5|0.4|5|0|345; (*GB) gi|255539807|ref|XP_002510968.1| (e_value=2e-110) aldo-keto reductase, putative [Ricinus communis];; (*SWP) sp|Q7G765|NADO2_ORYSJ (e_value=5e-61) Probable NAD(P)H-dependent oxidoreductase 2 OS=Oryza sativa subsp. japonica GN=Os10g0113100 PE=2 SV=1;; (*TAIR) AT5G62420.1 (e_value=8e-106) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:25064835-25066111 FORWARD LENGTH=316;; (*ITAG) Solyc03g093280.1.1 (e_value=8e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47906753-47908059 transcript_region:SL2.40ch03:47906753..47908059+ go_terms:GO:0045290 functional_description:"Reductase 1 (AHRD V1 ***- Q6TY49_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0045290 NbS00004903g0020.1 protein AED:0.00 eAED:0.00 QI:209|1|0.5|1|0|0.5|2|98|44 NbS00004903g0021.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.85|1|0.33|0.42|7|0|210; (*GB) gi|225455062|ref|XP_002263933.1| (e_value=6e-67) PREDICTED: uncharacterized protein LOC100257148 [Vitis vinifera];; (*TAIR) AT5G61450.1 (e_value=4e-57) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24710240-24712882 REVERSE LENGTH=447;; (*ITAG) Solyc03g093300.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:47917221-47929938 transcript_region:SL2.40ch03:47917221..47929938- functional_description:"2-phosphoglycerate kinase (AHRD V1 ***- C3SAC6_BRADI)"; NbS00004903g0027.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.25|0.66|0.75|4|0|61 NbS00018337g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|488; (*GB) gi|225455580|ref|XP_002269179.1| (e_value=0.0) PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Vitis vinifera];; (*SWP) sp|Q40287|UFOG5_MANES (e_value=5e-178) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=1e-151) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc02g085660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43068424-43069896 transcript_region:SL2.40ch02:43068424..43069896- go_terms:GO:0047209,GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209,GO:0080043 NbS00018337g0011.1 protein AED:0.30 eAED:0.30 QI:212|0.83|0.71|0.85|0.83|0.57|7|0|170; (*GB) gi|255568247|ref|XP_002525098.1| (e_value=3e-91) ubiquitin-conjugating enzyme m, putative [Ricinus communis];; (*SWP) sp|Q9SDY5|RCE1_ARATH (e_value=4e-85) NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1;; (*TAIR) AT4G36800.2 (e_value=3e-86) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184;; (*ITAG) Solyc02g085690.2.1 (e_value=8e-95) genomic_reference:SL2.40ch02 gene_region:43086573-43090470 transcript_region:SL2.40ch02:43086573..43090470- go_terms:GO:0006464,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 4 (AHRD V1 ***- UBC4_SCHPO); contains Interpro domain(s) IPR015580 RUB1 conjugating enzyme Ubc12 "; GO:0006464,GO:0043687 NbS00018337g0002.1 protein AED:0.08 eAED:0.08 QI:195|1|1|1|0.66|0.5|4|499|496; (*GB) gi|225430840|ref|XP_002273483.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254794 [Vitis vinifera];; (*TAIR) AT4G36790.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:17336360-17338304 FORWARD LENGTH=489;; (*ITAG) Solyc02g085670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43075413-43078617 transcript_region:SL2.40ch02:43075413..43078617+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- A4FJQ9_SACEN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00024863g0001.1 protein AED:0.20 eAED:0.22 QI:113|0.63|0.58|0.91|1|1|12|0|783; (*GB) gi|225455868|ref|XP_002274587.1| (e_value=0.0) PREDICTED: lysosomal acid lipase/cholesteryl ester hydrolase-like [Vitis vinifera];; (*SWP) sp|Q5VXJ0|LIPK_HUMAN (e_value=8e-18) Lipase member K OS=Homo sapiens GN=LIPK PE=2 SV=2;; (*TAIR) AT1G73920.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27791194-27794698 FORWARD LENGTH=704;; (*ITAG) Solyc12g038160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34524304-34530987 transcript_region:SL2.40ch12:34524304..34530987+ go_terms:GO:0016298 functional_description:"Lipase family protein (AHRD V1 **** D7KRN7_ARALY); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0016298 NbS00006172g0020.1 protein AED:0.08 eAED:0.08 QI:307|1|1|1|0.8|0.90|11|974|606; (*GB) gi|16904226|gb|AAL30820.1|AF435452_1 (e_value=0.0) calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT3G50530.1 (e_value=0.0) | Symbols: CRK | CDPK-related kinase | chr3:18753833-18756487 FORWARD LENGTH=601;; (*ITAG) Solyc02g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46628868-46634108 transcript_region:SL2.40ch02:46628868..46634108+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 **** Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00006172g0014.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|0|0|2|0|94; (*GB) gi|224096790|ref|XP_002310737.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50520.1 (e_value=3e-40) | Symbols: | Phosphoglycerate mutase family protein | chr3:18748058-18749418 FORWARD LENGTH=230;; (*ITAG) Solyc02g065080.2.1 (e_value=2e-44) genomic_reference:SL2.40ch02 gene_region:30825650-30835753 transcript_region:SL2.40ch02:30825650..30835753- go_terms:GO:0016868 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 *-*- GPMA_METS4); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0016868 NbS00006172g0002.1 protein AED:0.29 eAED:0.33 QI:0|0.57|0.5|1|0.85|0.75|8|406|354; (*GB) gi|147784629|emb|CAN74932.1| (e_value=2e-67) hypothetical protein VITISV_044432 [Vitis vinifera];; (*SWP) sp|Q338N2|C3H62_ORYSJ (e_value=5e-35) Zinc finger CCCH domain-containing protein 62 OS=Oryza sativa subsp. japonica GN=Os10g0391300 PE=2 SV=2;; (*TAIR) AT5G66840.1 (e_value=1e-47) | Symbols: | SAP domain-containing protein | chr5:26692922-26695296 REVERSE LENGTH=551;; (*ITAG) Solyc02g090530.2.1 (e_value=7e-143) genomic_reference:SL2.40ch02 gene_region:46639874-46643399 transcript_region:SL2.40ch02:46639874..46643399+ go_terms:GO:0003676 functional_description:"Zinc finger CCCH domain-containing protein 62 (AHRD V1 *--- C3H62_ORYSJ); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00006172g0016.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|77 NbS00006172g0022.1 protein AED:0.29 eAED:0.30 QI:352|0.75|0.8|1|0.5|0.4|5|0|254; (*GB) gi|255562615|ref|XP_002522313.1| (e_value=6e-147) short-chain dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q2KIJ5|KDSR_BOVIN (e_value=2e-12) 3-ketodihydrosphingosine reductase OS=Bos taurus GN=KDSR PE=2 SV=1;; (*TAIR) AT3G50560.1 (e_value=1e-123) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272;; (*ITAG) Solyc02g090540.2.1 (e_value=1e-163) genomic_reference:SL2.40ch02 gene_region:46644757-46646996 transcript_region:SL2.40ch02:46644757..46646996- go_terms:GO:0050327 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LTG0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0050327 NbS00031102g0004.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|255548485|ref|XP_002515299.1| (e_value=1e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G02090.1 (e_value=7e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:923122-923730 FORWARD LENGTH=202;; (*ITAG) Solyc01g079550.2.1 (e_value=1e-100) genomic_reference:SL2.40ch01 gene_region:71128676-71129498 transcript_region:SL2.40ch01:71128676..71129498+ functional_description:"Multidrug resistance protein ABC transporter family protein (AHRD V1 ***- B9GSR7_POPTR)"; NbS00031102g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|193; (*GB) gi|1549222|dbj|BAA13463.1| (e_value=1e-100) NtSar1 protein [Nicotiana tabacum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=7e-96) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=6e-97) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc06g009660.2.1 (e_value=5e-102) genomic_reference:SL2.40ch06 gene_region:3608115-3612636 transcript_region:SL2.40ch06:3608115..3612636+ go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00060364g0005.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|0.66|0.5|4|0|222; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-33) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00004824g0002.1 protein AED:0.09 eAED:0.26 QI:0|0|0|1|0|0|2|0|115 NbS00051766g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|1|1|4|0|376; (*GB) gi|147863982|emb|CAN81107.1| (e_value=0.0) hypothetical protein VITISV_008170 [Vitis vinifera];; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc01g087070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73772134-73774143 transcript_region:SL2.40ch01:73772134..73774143- go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00001788g0004.1 protein AED:0.09 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|720; (*GB) gi|359493563|ref|XP_002269754.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71420-like [Vitis vinifera];; (*SWP) sp|Q9C9H9|PP114_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1;; (*TAIR) AT1G71420.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26917822-26920059 REVERSE LENGTH=745;; (*ITAG) Solyc02g062630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28953209-28955056 transcript_region:SL2.40ch02:28953209..28955056- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00001788g0015.1 protein AED:0.36 eAED:0.39 QI:0|0.33|0.25|1|0.33|0.5|4|258|454; (*GB) gi|225434135|ref|XP_002277631.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Vitis vinifera];; (*SWP) sp|Q96DI7|SNR40_HUMAN (e_value=6e-138) U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1;; (*TAIR) AT2G43770.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:18134272-18135303 REVERSE LENGTH=343;; (*ITAG) Solyc03g059100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:25012940-25013920 transcript_region:SL2.40ch03:25012940..25013920- go_terms:GO:0003714 functional_description:"WD-repeat protein 57 (AHRD V1 **-- B6TXG5_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00001788g0016.1 protein AED:0.53 eAED:0.89 QI:0|0|0|0.66|1|1|3|0|100 NbS00001788g0017.1 protein AED:0.29 eAED:0.32 QI:91|1|0.87|1|0.71|0.75|8|379|212; (*GB) gi|356512588|ref|XP_003525000.1| (e_value=1e-117) PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max];; (*SWP) sp|Q54Y55|SHKC_DICDI (e_value=2e-27) Dual specificity protein kinase shkC OS=Dictyostelium discoideum GN=shkC PE=3 SV=1;; (*TAIR) AT2G31800.1 (e_value=6e-112) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=3e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00001788g0018.1 protein AED:0.95 eAED:0.95 QI:0|0|0|0.33|1|1|3|0|245; (*GB) gi|357519311|ref|XP_003629944.1| (e_value=6e-93) Dual specificity tyrosine-phosphorylation-regulated kinase 1A [Medicago truncatula];; (*SWP) sp|Q9ULJ7|ANR50_HUMAN (e_value=3e-17) Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4;; (*TAIR) AT2G31800.1 (e_value=5e-93) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=3e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbC25604970g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|158; (*GB) gi|42562051|ref|NP_172855.2| (e_value=2e-94) O-fucosyltransferase family protein [Arabidopsis thaliana];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-33) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G14020.1 (e_value=4e-97) | Symbols: | O-fucosyltransferase family protein | chr1:4802930-4805111 FORWARD LENGTH=499;; (*ITAG) Solyc05g013140.2.1 (e_value=1e-106) genomic_reference:SL2.40ch05 gene_region:6230026-6235354 transcript_region:SL2.40ch05:6230026..6235354+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00024447g0004.1 protein AED:0.12 eAED:0.13 QI:0|1|0.5|1|0|0|2|456|285; (*GB) gi|225453252|ref|XP_002266696.1| (e_value=5e-78) PREDICTED: uncharacterized protein LOC100244411 [Vitis vinifera];; (*TAIR) AT2G44600.1 (e_value=2e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18408845-18409786 FORWARD LENGTH=313;; (*ITAG) Solyc01g088530.2.1 (e_value=1e-152) genomic_reference:SL2.40ch01 gene_region:75065940-75067185 transcript_region:SL2.40ch01:75065940..75067185+ functional_description:"Transposon protein (AHRD V1 ***- B6TXP6_MAIZE)"; NbS00025933g0006.1 protein AED:0.46 eAED:0.48 QI:0|0|0|0.4|1|1|5|0|185; (*GB) gi|225426777|ref|XP_002282782.1| (e_value=1e-27) PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera];; (*TAIR) AT1G12650.4 (e_value=1e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=3e-42) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00009442g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|64; (*GB) gi|255553315|ref|XP_002517700.1| (e_value=9e-26) F-box/LRR-repeat protein, putative [Ricinus communis];; (*TAIR) AT1G15740.1 (e_value=1e-20) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc07g007400.2.1 (e_value=4e-26) genomic_reference:SL2.40ch07 gene_region:2130546-2133345 transcript_region:SL2.40ch07:2130546..2133345- functional_description:"Leucine-rich repeat-like protein (AHRD V1 **-- Q6K620_ORYSJ)"; NbS00009442g0005.1 protein AED:0.21 eAED:0.26 QI:4|0.92|0.8|1|0.85|0.93|15|0|679; (*GB) gi|224460069|gb|ACN43585.1| (e_value=0.0) nuclear cap-binding protein [Solanum tuberosum];; (*SWP) sp|Q9SIU2|NCBP1_ARATH (e_value=0.0) Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2;; (*TAIR) AT2G13540.1 (e_value=0.0) | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848;; (*ITAG) Solyc10g005530.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:432555-449709 transcript_region:SL2.40ch10:432555..449709- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 1 (AHRD V1 *-** B0X1G0_CULQU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515,GO:0000339 NbC25602727g0003.1 protein AED:0.00 eAED:0.00 QI:121|1|1|1|1|1|2|36|162; (*GB) gi|357483859|ref|XP_003612216.1| (e_value=3e-63) Atfp6-like protein [Medicago truncatula];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-62) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G38580.1 (e_value=1e-63) | Symbols: ATFP6, HIPP26, FP6 | farnesylated protein 6 | chr4:18034596-18035693 FORWARD LENGTH=153;; (*ITAG) Solyc02g083550.1.1 (e_value=1e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41495117-41495669 transcript_region:SL2.40ch02:41495117..41495669+ go_terms:GO:0005515 functional_description:"Metal ion binding protein (AHRD V1 **-* D7MN12_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515 NbS00014486g0017.1 protein AED:0.08 eAED:0.09 QI:0|0.33|0|1|0.66|0.5|4|0|1057; (*GB) gi|357511943|ref|XP_003626260.1| (e_value=1e-99) DNA (cytosine-5)-methyltransferase 3A [Medicago truncatula];; (*TAIR) AT5G27650.1 (e_value=6e-94) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:9785511-9789094 FORWARD LENGTH=1072;; (*ITAG) Solyc01g099360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00014486g0003.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|337; (*GB) gi|93115321|gb|ABE98329.1| (e_value=3e-138) SRC2-like protein [Nicotiana benthamiana];; (*TAIR) AT1G09070.1 (e_value=9e-34) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc01g099370.2.1 (e_value=8e-95) genomic_reference:SL2.40ch01 gene_region:81419821-81421215 transcript_region:SL2.40ch01:81419821..81421215+ go_terms:GO:0005515 functional_description:"SRC2 homolog (Fragment) (AHRD V1 ***- B3IYJ9_9SOLA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005515 NbS00014486g0018.1 protein AED:0.26 eAED:0.27 QI:461|0.95|0.85|1|0.8|0.71|21|71|601; (*GB) gi|255542698|ref|XP_002512412.1| (e_value=0.0) acyl-CoA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=0.0) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT3G05420.2 (e_value=0.0) | Symbols: ACBP4 | acyl-CoA binding protein 4 | chr3:1561880-1567047 FORWARD LENGTH=669;; (*ITAG) Solyc01g099350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81389905-81403291 transcript_region:SL2.40ch01:81389905..81403291+ go_terms:GO:0000062 functional_description:"Acyl-CoA binding protein 4 acyl-CoA-binding domain 4 (AHRD V1 **-* D7L3U2_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0000062 NbS00014486g0016.1 protein AED:0.37 eAED:0.39 QI:82|1|0|1|0|0|2|0|46 NbS00014486g0015.1 protein AED:0.06 eAED:0.31 QI:18|0|0|1|0|0|2|0|121 NbS00023012g0015.1 protein AED:0.20 eAED:0.20 QI:359|0.5|0.33|1|0|0|3|0|113; (*GB) gi|297834208|ref|XP_002884986.1| (e_value=4e-33) hypothetical protein ARALYDRAFT_478776 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q92544|TM9S4_HUMAN (e_value=1e-19) Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2;; (*TAIR) AT3G13772.1 (e_value=9e-36) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc12g044890.1.1 (e_value=2e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45693139-45696688 transcript_region:SL2.40ch12:45693139..45696688- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00045365g0002.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|0|0|2|0|67; (*GB) gi|350534468|ref|NP_001234398.1| (e_value=2e-14) ripening regulated protein DDTFR18 [Solanum lycopersicum];; (*ITAG) Solyc04g074850.2.1 (e_value=7e-18) genomic_reference:SL2.40ch04 gene_region:58359526-58369622 transcript_region:SL2.40ch04:58359526..58369622- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00022184g0016.1 protein AED:0.01 eAED:0.01 QI:230|1|1|1|0.5|0.6|5|411|661; (*GB) gi|225436886|ref|XP_002273696.1| (e_value=0.0) PREDICTED: GPI transamidase component PIG-T-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8BXQ2|PIGT_MOUSE (e_value=7e-77) GPI transamidase component PIG-T OS=Mus musculus GN=Pigt PE=1 SV=2;; (*TAIR) AT3G07140.1 (e_value=0.0) | Symbols: | GPI transamidase component Gpi16 subunit family protein | chr3:2261278-2263632 FORWARD LENGTH=644;; (*ITAG) Solyc09g059960.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:52541072-52545592 transcript_region:SL2.40ch09:52541072..52545592- go_terms:GO:0005515,GO:0003923 functional_description:"GPI transamidase component GPI16 (AHRD V1 **** C0SJI2_PARBP); contains Interpro domain(s) IPR007245 Gpi16 subunit, GPI transamidase component "; GO:0005515,GO:0003923 NbS00022184g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.77|1|0.75|0.66|9|0|591; (*GB) gi|359472659|ref|XP_002279891.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247521 [Vitis vinifera];; (*TAIR) AT1G15060.1 (e_value=0.0) | Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:5184053-5186856 REVERSE LENGTH=578;; (*ITAG) Solyc09g059670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50659801-50664749 transcript_region:SL2.40ch09:50659801..50664749- go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold-1 (AHRD V1 *--- Q2IHF4_ANADE); contains Interpro domain(s) IPR016969 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 "; GO:0006508 NbS00022184g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.62|0.66|0.66|1|1|9|240|277; (*GB) gi|225433606|ref|XP_002273725.1| (e_value=8e-52) PREDICTED: uncharacterized protein LOC100248761 [Vitis vinifera];; (*TAIR) AT1G04850.1 (e_value=3e-49) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc09g059630.1.1 (e_value=7e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50539823-50547238 transcript_region:SL2.40ch09:50539823..50547238- functional_description:"UBX domain-containing protein 1 (AHRD V1 *-*- UBXN1_XENTR); contains Interpro domain(s) IPR018997 PUB domain "; NbS00022184g0013.1 protein AED:0.15 eAED:0.15 QI:204|1|1|1|1|1|4|265|217; (*GB) gi|356560909|ref|XP_003548729.1| (e_value=5e-52) PREDICTED: uncharacterized protein LOC100780719 [Glycine max];; (*TAIR) AT3G07150.1 (e_value=1e-48) | Symbols: | unknown protein; Has 19 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2263806-2264576 REVERSE LENGTH=199;; (*ITAG) Solyc09g059950.2.1 (e_value=9e-89) genomic_reference:SL2.40ch09 gene_region:52538523-52540924 transcript_region:SL2.40ch09:52538523..52540924+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019799g0006.1 protein AED:0.04 eAED:0.06 QI:0|1|0|1|1|1|2|0|237; (*GB) gi|225444922|ref|XP_002282173.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100261004 [Vitis vinifera];; (*SWP) sp|Q5HZ36|GAT21_ARATH (e_value=3e-14) GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2;; (*TAIR) AT5G56860.1 (e_value=2e-15) | Symbols: GNC, GATA21 | GATA type zinc finger transcription factor family protein | chr5:22989630-22991351 REVERSE LENGTH=398;; (*ITAG) Solyc12g008830.1.1 (e_value=4e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2159138-2161186 transcript_region:SL2.40ch12:2159138..2161186- go_terms:GO:0006355 functional_description:"GATA transcription factor 20 (AHRD V1 *-*- B6SS40_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00019799g0007.1 protein AED:0.20 eAED:0.20 QI:127|1|1|1|0.5|0.33|3|661|100; (*GB) gi|356567739|ref|XP_003552074.1| (e_value=2e-53) PREDICTED: uncharacterized protein At4g29660-like [Glycine max];; (*SWP) sp|Q94K18|Y4966_ARATH (e_value=6e-44) Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1;; (*TAIR) AT4G29660.1 (e_value=5e-45) | Symbols: EMB2752 | embryo defective 2752 | chr4:14534495-14535171 REVERSE LENGTH=103;; (*ITAG) Solyc12g008810.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2150650-2152871 transcript_region:SL2.40ch12:2150650..2152871- functional_description:"Unknown Protein (AHRD V1)"; NbS00019799g0011.1 protein AED:0.41 eAED:0.57 QI:0|0|0|1|1|1|2|0|160; (*GB) gi|225444961|ref|XP_002282498.1| (e_value=5e-22) PREDICTED: uncharacterized protein LOC100247499 [Vitis vinifera];; (*TAIR) AT5G56840.1 (e_value=7e-17) | Symbols: | myb-like transcription factor family protein | chr5:22980789-22982152 FORWARD LENGTH=233;; (*ITAG) Solyc12g008800.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2142818-2144657 transcript_region:SL2.40ch12:2142818..2144657+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 ***- Q9LVS0_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00019799g0012.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|1|1|2|0|68 NbS00028235g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0|1|0.33|0.5|4|0|784; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=0.0) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=0.0) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=0.0) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6804623-6808233 transcript_region:SL2.40ch09:6804623..6808233- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00028235g0019.1 protein AED:0.21 eAED:0.22 QI:0|0.14|0|1|0.42|0.37|8|0|792; (*GB) gi|356507624|ref|XP_003522564.1| (e_value=4e-117) PREDICTED: wall-associated receptor kinase 2-like [Glycine max];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=2e-90) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=1e-91) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00028235g0016.1 protein AED:0.12 eAED:0.12 QI:557|0.5|0.66|1|0.5|0.66|3|0|622; (*GB) gi|225456209|ref|XP_002282887.1| (e_value=0.0) PREDICTED: wall-associated receptor kinase 2-like isoform 3 [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=3e-142) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=3e-143) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00028235g0017.1 protein AED:0.81 eAED:0.81 QI:0|0|0.16|0.16|0.6|0.66|6|41|131; (*GB) gi|356568126|ref|XP_003552264.1| (e_value=3e-20) PREDICTED: importin-11-like [Glycine max];; (*TAIR) AT3G08960.1 (e_value=4e-16) | Symbols: | ARM repeat superfamily protein | chr3:2730405-2736762 REVERSE LENGTH=1010;; (*ITAG) Solyc09g005130.2.1 (e_value=5e-30) genomic_reference:SL2.40ch09 gene_region:78471-95915 transcript_region:SL2.40ch09:78471..95915+ go_terms:GO:0006886,GO:0005488 functional_description:"Importin-11 (AHRD V1 ***- B0WJI0_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00020414g0005.1 protein AED:0.03 eAED:0.03 QI:611|1|1|1|0.66|0.25|4|1477|386; (*GB) gi|374110731|sp|F4IME2.2|MSL8_ARATH (e_value=2e-53) RecName: Full=Mechanosensitive ion channel protein 8; AltName: Full=Mechanosensitive channel of small conductance-like 8; AltName: Full=MscS-Like protein 8;; (*SWP) sp|F4IME2|MSL8_ARATH (e_value=5e-55) Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2;; (*TAIR) AT1G78610.1 (e_value=3e-53) | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856;; (*ITAG) Solyc10g055710.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52715600-52720047 transcript_region:SL2.40ch10:52715600..52720047- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B8LXW9_TALSN); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00020414g0012.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|0.83|6|0|282; (*GB) gi|255567758|ref|XP_002524857.1| (e_value=1e-171) catalytic, putative [Ricinus communis];; (*TAIR) AT5G10460.1 (e_value=1e-148) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:3287822-3289844 FORWARD LENGTH=306;; (*ITAG) Solyc12g038820.1.1 (e_value=1e-167) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:36481364-36482116 transcript_region:SL2.40ch12:36481364..36482116+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IIA (AHRD V1 ***- B6TMM7_MAIZE); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00020414g0017.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|330|304; (*GB) gi|359492223|ref|XP_003634385.1| (e_value=4e-106) PREDICTED: uncharacterized protein LOC100854357 [Vitis vinifera];; (*TAIR) AT5G05800.2 (e_value=2e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:1743234-1744751 REVERSE LENGTH=449;; (*ITAG) Solyc08g062420.2.1 (e_value=2e-172) genomic_reference:SL2.40ch08 gene_region:48280886-48282192 transcript_region:SL2.40ch08:48280886..48282192- functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 ***- Q9FFJ8_ARATH)"; NbS00024563g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|1|1|1|6|101|417; (*GB) gi|2414570|emb|CAB16317.1| (e_value=0.0) cysteine proteinase precursor [Nicotiana tabacum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=1e-141) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=1e-147) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc02g093040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48560840-48562364 transcript_region:SL2.40ch02:48560840..48562364- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00001025g0014.1 protein AED:0.25 eAED:0.25 QI:530|0.75|0.6|1|0.75|0.6|5|0|388; (*GB) gi|224133996|ref|XP_002327730.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5Z8P0|P2C60_ORYSJ (e_value=0.0) Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc03g033340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9193147-9197708 transcript_region:SL2.40ch03:9193147..9197708- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B6SYG9_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00001025g0015.1 protein AED:0.24 eAED:0.28 QI:0|0.55|0.4|0.9|0.44|0.4|10|0|473; (*GB) gi|357517935|ref|XP_003629256.1| (e_value=5e-77) Aspartic proteinase-like protein [Medicago truncatula];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=1e-26) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT2G17760.1 (e_value=3e-66) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:7713488-7716269 FORWARD LENGTH=513;; (*ITAG) Solyc03g033360.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9209009-9212045 transcript_region:SL2.40ch03:9209009..9212045+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin II-like (AHRD V1 **-- Q651C2_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00001025g0018.1 protein AED:0.01 eAED:0.01 QI:141|1|1|1|1|1|3|589|87; (*GB) gi|255580651|ref|XP_002531148.1| (e_value=5e-31) Protein preY, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q5M8Z2|PREY_XENTR (e_value=4e-18) Protein preY, mitochondrial OS=Xenopus tropicalis GN=prey PE=2 SV=1;; (*TAIR) AT4G35905.1 (e_value=4e-30) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17007284-17008067 REVERSE LENGTH=77;; (*ITAG) Solyc03g033370.2.1 (e_value=6e-41) genomic_reference:SL2.40ch03 gene_region:9213975-9215729 transcript_region:SL2.40ch03:9213975..9215729- go_terms:GO:0005515 functional_description:"PreY mitochondrial (AHRD V1 ***- B5XAT2_SALSA); contains Interpro domain(s) IPR005651 Protein of unknown function DUF343 "; GO:0005515 NbS00001025g0016.1 protein AED:0.11 eAED:0.11 QI:199|1|1|1|0.66|0.75|4|533|239; (*GB) gi|301070456|gb|ADK55590.1| (e_value=1e-133) plastid NEP interaction protein [Nicotiana benthamiana];; (*SWP) sp|Q8GT75|NIP1_ARATH (e_value=3e-115) NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2;; (*TAIR) AT4G35840.1 (e_value=2e-116) | Symbols: | RING/U-box superfamily protein | chr4:16981083-16982266 FORWARD LENGTH=236;; (*ITAG) Solyc03g033330.2.1 (e_value=6e-136) genomic_reference:SL2.40ch03 gene_region:9190493-9193073 transcript_region:SL2.40ch03:9190493..9193073+ go_terms:GO:0005515 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00001025g0006.1 protein AED:0.11 eAED:0.11 QI:237|1|1|1|0.85|0.75|8|482|290; (*GB) gi|240256489|ref|NP_201407.4| (e_value=5e-153) iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana];; (*SWP) sp|P54001|P4HA1_RAT (e_value=2e-35) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT5G66060.1 (e_value=1e-155) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:26419481-26421118 FORWARD LENGTH=289;; (*ITAG) Solyc03g033320.2.1 (e_value=9e-161) genomic_reference:SL2.40ch03 gene_region:9178481-9182945 transcript_region:SL2.40ch03:9178481..9182945+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9FKX6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00001025g0026.1 protein AED:0.29 eAED:0.31 QI:386|0.57|0.5|1|0|0.5|8|259|427; (*GB) gi|334351803|dbj|BAK32932.1| (e_value=0.0) mid1-complementing activity 1 [Nicotiana tabacum];; (*SWP) sp|Q8L7E9|MCAC1_ARATH (e_value=2e-166) Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=2 SV=1;; (*TAIR) AT4G35920.2 (e_value=1e-167) | Symbols: MCA1 | PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421;; (*ITAG) Solyc02g083540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41475623-41481382 transcript_region:SL2.40ch02:41475623..41481382- functional_description:"Protein kinase domain containing protein (AHRD V1 *--- Q2R001_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00001025g0024.1 protein AED:0.17 eAED:0.51 QI:57|0|0|1|0|0|3|0|135; (*GB) gi|39753094|gb|AAR30312.1| (e_value=4e-43) photosystem I P700 chlorophyll a apoprotein A2 [Heterosigma akashiwo];; (*SWP) sp|A0T0M7|PSAB_PHATC (e_value=8e-44) Photosystem I P700 chlorophyll a apoprotein A2 OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psaB PE=3 SV=1;; (*ITAG) ATCG00340.1 (e_value=3e-42) | Symbols: PSAB | Photosystem I, PsaA/PsaB protein | chrC:37375-39579 REVERSE LENGTH=734;; (*ITAG) Solyc12g033060.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22377108-22378023 transcript_region:SL2.40ch12:22377108..22378023+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A2 (AHRD V1 ***- A7Y3D1_IPOPU); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00019122g0004.1 protein AED:0.30 eAED:0.34 QI:367|0.58|0.61|1|0.75|0.61|13|0|618; (*GB) gi|359480667|ref|XP_002272767.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710-like [Vitis vinifera];; (*SWP) sp|Q8W4S5|Y5371_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1;; (*TAIR) AT5G63710.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25499475-25502598 FORWARD LENGTH=614;; (*ITAG) Solyc05g056370.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64848770-64852505 transcript_region:SL2.40ch05:64848770..64852505- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00031756g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.25|0|0.6|0.75|0.6|5|0|263; (*GB) gi|162464180|ref|NP_001105391.1| (e_value=3e-102) 40S ribosomal protein S8 [Zea mays];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=9e-104) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=1e-94) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=1e-99) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00012275g0004.1 protein AED:0.07 eAED:0.07 QI:279|1|1|1|1|1|6|393|663; (*GB) gi|225452394|ref|XP_002273718.1| (e_value=0.0) PREDICTED: cysteine-rich receptor-like protein kinase 42 [Vitis vinifera];; (*SWP) sp|Q9FNE1|CRK42_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1;; (*TAIR) AT5G40380.1 (e_value=0.0) | Symbols: CRK42 | cysteine-rich RLK (RECEPTOR-like protein kinase) 42 | chr5:16152121-16155038 FORWARD LENGTH=651;; (*ITAG) Solyc02g086590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43823654-43827592 transcript_region:SL2.40ch02:43823654..43827592- go_terms:GO:0004672 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672 NbS00012275g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.25|1|1|4|0|120; (*GB) gi|117107|sp|P19173.3|COX5C_IPOBA (e_value=3e-30) RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxidase polypeptide Vc;; (*SWP) sp|P19173|COX5C_IPOBA (e_value=9e-32) Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3;; (*TAIR) AT5G40382.1 (e_value=3e-29) | Symbols: | Cytochrome c oxidase subunit Vc family protein | chr5:16155486-16155683 REVERSE LENGTH=65;; (*ITAG) Solyc01g079420.2.1 (e_value=4e-24) genomic_reference:SL2.40ch01 gene_region:71005941-71009193 transcript_region:SL2.40ch01:71005941..71009193+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 *-*- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc "; GO:0005746 NbS00045564g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.84|0.78|0.92|0.69|0.64|14|0|914; (*GB) gi|359493967|ref|XP_002283806.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243589 [Vitis vinifera];; (*TAIR) AT5G07400.1 (e_value=0.0) | Symbols: | forkhead-associated domain-containing protein / FHA domain-containing protein | chr5:2340814-2345321 FORWARD LENGTH=1084;; (*ITAG) Solyc03g117960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60986350-60996371 transcript_region:SL2.40ch03:60986350..60996371- go_terms:GO:0005634,GO:0016818 functional_description:"Tyrosyl-DNA phosphodiesterase family protein (AHRD V1 *-*- B6AFR8_CRYMR); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0005634,GO:0016818 NbS00061710g0002.1 protein AED:0.10 eAED:0.18 QI:0|0.33|0.25|0.75|1|0.5|4|380|86; (*GB) gi|218744536|dbj|BAH03477.1| (e_value=2e-29) secretory carrier-associated membrane protein 2 [Nicotiana tabacum];; (*ITAG) Solyc08g076210.2.1 (e_value=1e-31) genomic_reference:SL2.40ch08 gene_region:57395919-57403348 transcript_region:SL2.40ch08:57395919..57403348+ go_terms:GO:0019904 functional_description:"Secretory carrier-associated membrane protein 2 (AHRD V1 ***- B7X6S6_TOBAC); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00004561g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|224068388|ref|XP_002302734.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FI53|FUM2_ARATH (e_value=0.0) Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1;; (*TAIR) AT5G50950.2 (e_value=0.0) | Symbols: FUM2 | FUMARASE 2 | chr5:20729687-20733636 FORWARD LENGTH=499;; (*ITAG) Solyc09g075450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62645088-62653706 transcript_region:SL2.40ch09:62645088..62653706- go_terms:GO:0005515 functional_description:"Fumarate hydratase class II (AHRD V1 ***- C5GAL1_AJEDR); contains Interpro domain(s) IPR005677 Fumarate hydratase, class II "; GO:0005515 NbS00004561g0006.1 protein AED:0.21 eAED:0.24 QI:67|0.6|0.66|1|0.6|0.5|6|405|483; (*GB) gi|225424936|ref|XP_002271193.1| (e_value=1e-58) PREDICTED: protein IQ-DOMAIN 31 [Vitis vinifera];; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=3e-32) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G14380.2 (e_value=3e-43) | Symbols: IQD28 | IQ-domain 28 | chr1:4918279-4920761 REVERSE LENGTH=602;; (*ITAG) Solyc05g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1694652-1699497 transcript_region:SL2.40ch05:1694652..1699497+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T984_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00004561g0107.1 protein AED:0.13 eAED:0.13 QI:1106|0.83|0.85|1|1|1|7|0|709 NbS00004561g0110.1 protein AED:0.07 eAED:0.09 QI:0|0.5|0|1|0.5|0.4|5|0|337 NbS00003164g0006.1 protein AED:0.60 eAED:0.78 QI:33|0|0|0.66|0|0|3|0|41 NbS00037137g0008.1 protein AED:0.07 eAED:0.09 QI:0|0.72|0.66|1|0.63|0.58|12|0|1126; (*GB) gi|240255770|ref|NP_192706.5| (e_value=3e-112) CST complex subunit CTC1 [Arabidopsis thaliana];; (*SWP) sp|D0EL35|CTC1_ARATH (e_value=9e-114) CST complex subunit CTC1 OS=Arabidopsis thaliana GN=CTC1 PE=1 SV=2;; (*TAIR) AT4G09680.1 (e_value=7e-115) | Symbols: CTC1, ATCTC1 | conserved telomere maintenance component 1 | chr4:6116819-6123017 FORWARD LENGTH=1274;; (*ITAG) Solyc12g062480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:51304056-51309614 transcript_region:SL2.40ch12:51304056..51309614- functional_description:"CST complex subunit CTC1 (AHRD V1 ***- CTC1_ARATH)"; NbS00039112g0006.1 protein AED:0.37 eAED:0.37 QI:159|1|0.75|1|0.85|0.87|8|0|332; (*GB) gi|359475380|ref|XP_002282068.2| (e_value=5e-52) PREDICTED: B3 domain-containing protein Os01g0234100-like [Vitis vinifera];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=1e-34) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=2e-34) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108130.2.1 (e_value=9e-173) genomic_reference:SL2.40ch01 gene_region:87253005-87257799 transcript_region:SL2.40ch01:87253005..87257799+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 *-*- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00011894g0012.1 protein AED:0.16 eAED:0.16 QI:11|0.90|0.83|1|0.81|0.66|12|0|498; (*GB) gi|302142026|emb|CBI19229.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0BNM1|NNRE_RAT (e_value=2e-77) NAD(P)H-hydrate epimerase OS=Rattus norvegicus GN=Apoa1bp PE=2 SV=1;; (*TAIR) AT5G49970.1 (e_value=0.0) | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxamine) 5'-phosphate oxidase | chr5:20329213-20332900 FORWARD LENGTH=530;; (*ITAG) Solyc03g113780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57880479-57887886 transcript_region:SL2.40ch03:57880479..57887886- go_terms:GO:0004733 functional_description:"Pyridoxine/pyridoxamine 5&apos-phosphate oxidase (AHRD V1 *-** Q4C3B6_CROWT); contains Interpro domain(s) IPR000659 Pyridoxamine 5'-phosphate oxidase "; GO:0004733 NbS00011894g0013.1 protein AED:0.29 eAED:0.32 QI:408|0.64|0.66|1|0.42|0.53|15|336|427; (*GB) gi|302142026|emb|CBI19229.3| (e_value=3e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0PIT9|NNRE_PIG (e_value=5e-60) NAD(P)H-hydrate epimerase OS=Sus scrofa GN=APOA1BP PE=2 SV=1;; (*TAIR) AT5G49970.1 (e_value=1e-143) | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxamine) 5'-phosphate oxidase | chr5:20329213-20332900 FORWARD LENGTH=530;; (*ITAG) Solyc03g113770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57875338-57880089 transcript_region:SL2.40ch03:57875338..57880089- go_terms:GO:0004733 functional_description:"Pyridoxine/pyridoxamine 5&apos-phosphate oxidase (AHRD V1 *-** D7BCS8_MEISD); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0004733 NbS00011894g0003.1 protein AED:0.08 eAED:0.08 QI:10|0.9|1|1|0.9|0.81|11|425|412; (*GB) gi|224133412|ref|XP_002321561.1| (e_value=6e-115) repressor, antagonist of e2f-dp complex [Populus trichocarpa];; (*SWP) sp|Q8LSZ4|E2FE_ARATH (e_value=7e-94) E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1;; (*TAIR) AT3G48160.2 (e_value=6e-95) | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:17783641-17785846 FORWARD LENGTH=403;; (*ITAG) Solyc03g113760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57871803-57874897 transcript_region:SL2.40ch03:57871803..57874897+ go_terms:GO:0003677 functional_description:"E2F transcription factor-like protein (AHRD V1 ***- Q9LFQ9_ARATH); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003677 NbS00036912g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.11|0|0.6|0.88|0.8|10|0|294; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=3e-114) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=4e-94) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=5e-96) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc05g055090.2.1 (e_value=1e-115) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00012660g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.71|1|0.83|0.85|7|1150|543; (*GB) gi|224055383|ref|XP_002298497.1| (e_value=4e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58470.2 (e_value=4e-52) | Symbols: TAF15b | TBP-associated factor 15B | chr5:23638566-23640854 REVERSE LENGTH=422;; (*ITAG) Solyc06g082220.2.1 (e_value=6e-74) genomic_reference:SL2.40ch06 gene_region:44426967-44431355 transcript_region:SL2.40ch06:44426967..44431355+ go_terms:GO:0003676,GO:0000166 functional_description:"HIV-1 Tat specific factor 1 (Fragment) (AHRD V1 *--- Q5H918_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00012660g0015.1 protein AED:0.29 eAED:0.37 QI:0|0.6|0.33|1|0.6|0.66|6|0|295; (*GB) gi|82400118|gb|ABB72798.1| (e_value=2e-172) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=5e-174) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=3e-168) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc02g070350.2.1 (e_value=3e-176) genomic_reference:SL2.40ch02 gene_region:34687926-34690148 transcript_region:SL2.40ch02:34687926..34690148+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00042976g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|112; (*GB) gi|78191426|gb|ABB29934.1| (e_value=8e-34) acidic ribosomal protein P1a-like [Solanum tuberosum];; (*SWP) sp|Q8LEQ0|RLA13_ARATH (e_value=1e-25) 60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2;; (*TAIR) AT5G47700.2 (e_value=1e-26) | Symbols: | 60S acidic ribosomal protein family | chr5:19328019-19328724 REVERSE LENGTH=113;; (*ITAG) Solyc01g104370.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:84525541-84526490 transcript_region:SL2.40ch01:84525541..84526490- go_terms:GO:0005515 functional_description:"60S acidic ribosomal protein P1 (AHRD V1 ***- B6T3C1_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005515 NbS00042976g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|120; (*GB) gi|350535158|ref|NP_001234435.1| (e_value=3e-44) plantacyanin precursor [Solanum lycopersicum];; (*SWP) sp|P00303|BABL_CUCSA (e_value=5e-27) Basic blue protein OS=Cucumis sativus PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=2e-25) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104390.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84533973-84534423 transcript_region:SL2.40ch01:84533973..84534423+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6TT37_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00042976g0011.1 protein AED:0.19 eAED:0.28 QI:0|0.8|0.5|1|0.6|0.5|6|0|577; (*GB) gi|296084287|emb|CBI24675.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G59670.1 (e_value=2e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:22040485-22042380 FORWARD LENGTH=517;; (*ITAG) Solyc01g104350.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:84512955-84517727 transcript_region:SL2.40ch01:84512955..84517727+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024708g0007.1 protein AED:0.25 eAED:0.26 QI:0|0.90|0.95|1|0.85|0.86|22|366|726; (*GB) gi|225461512|ref|XP_002285125.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258981 isoform 1 [Vitis vinifera];; (*SWP) sp|O61122|SVKA_DICDI (e_value=5e-120) Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1;; (*TAIR) AT3G15220.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:5126899-5131752 REVERSE LENGTH=690;; (*ITAG) Solyc07g062940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62782190-62797981 transcript_region:SL2.40ch07:62782190..62797981- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010338g0002.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|224065445|ref|XP_002301821.1| (e_value=3e-67) predicted protein [Populus trichocarpa];; (*TAIR) AT4G27990.1 (e_value=7e-63) | Symbols: YLMG1-2, ATYLMG1-2 | YGGT family protein | chr4:13923991-13924647 REVERSE LENGTH=218;; (*ITAG) Solyc06g083110.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44952089-44952757 transcript_region:SL2.40ch06:44952089..44952757- go_terms:GO:0016020 functional_description:"Conserved hypothetical membrane protein (AHRD V1 *--- A2C9X4_PROM3); contains Interpro domain(s) IPR003425 Protein of unknown function YGGT "; GO:0016020 NbS00010338g0005.1 protein AED:0.14 eAED:0.14 QI:89|1|1|1|1|1|2|304|129; (*GB) gi|359477978|ref|XP_002264474.2| (e_value=1e-58) PREDICTED: dCTP pyrophosphatase 1-like [Vitis vinifera];; (*SWP) sp|Q91VC0|DCTP1_RAT (e_value=1e-26) dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1;; (*TAIR) AT3G25400.1 (e_value=3e-50) | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141;; (*ITAG) Solyc06g083130.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:44962541-44964031 transcript_region:SL2.40ch06:44962541..44964031- go_terms:GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- C4ZJP2_THASP); contains Interpro domain(s) IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 "; GO:0047429 NbS00021759g0009.1 protein AED:0.09 eAED:0.09 QI:184|0.92|1|1|0.76|0.85|14|302|828; (*GB) gi|297736229|emb|CBI24867.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G19485.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:6747167-6751443 FORWARD LENGTH=815;; (*ITAG) Solyc09g009710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3110834-3122561 transcript_region:SL2.40ch09:3110834..3122561+ go_terms:GO:0003677 functional_description:"General transcription factor 3C polypeptide 2 (AHRD V1 *-*- TF3C2_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0003677 NbS00021759g0010.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|490; (*GB) gi|225440946|ref|XP_002277129.1| (e_value=0.0) PREDICTED: cytochrome P450 94A1 [Vitis vinifera];; (*SWP) sp|O81117|C94A1_VICSA (e_value=9e-123) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT2G27690.1 (e_value=0.0) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc10g083400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62546111-62547604 transcript_region:SL2.40ch10:62546111..62547604- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00034956g0010.1 protein AED:0.03 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|856; (*GB) gi|224068933|ref|XP_002302860.1| (e_value=1e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVN6|AP180_ARATH (e_value=4e-145) Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1;; (*TAIR) AT1G05020.1 (e_value=3e-146) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:1435384-1437345 REVERSE LENGTH=653;; (*ITAG) Solyc12g006000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:616051-618237 transcript_region:SL2.40ch12:616051..618237+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein-like (AHRD V1 *-*- Q8LJJ6_ORYSJ); contains Interpro domain(s) IPR011417 ANTH "; GO:0030118,GO:0005543 NbS00034956g0001.1 protein AED:0.13 eAED:0.13 QI:203|1|1|1|0.5|0.6|15|382|603; (*GB) gi|60617257|gb|AAX31277.1| (e_value=0.0) MLO1 [Capsicum annuum];; (*SWP) sp|Q94KB7|MLO6_ARATH (e_value=0.0) MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2;; (*TAIR) AT1G61560.1 (e_value=0.0) | Symbols: MLO6, ATMLO6 | Seven transmembrane MLO family protein | chr1:22708875-22712032 REVERSE LENGTH=583;; (*ITAG) Solyc06g010030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:4786764-4792828 transcript_region:SL2.40ch06:4786764..4792828+ go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00034956g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.6|0.8|1|1|5|355|200; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=4e-77) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=3e-51) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=2e-52) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc12g005990.1.1 (e_value=5e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:608257-613415 transcript_region:SL2.40ch12:608257..613415+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00020106g0006.1 protein AED:0.16 eAED:0.16 QI:43|1|1|1|1|1|5|441|160; (*GB) gi|350535609|ref|NP_001234715.1| (e_value=4e-112) eukaryotic translation initiation factor 5A-4 [Solanum lycopersicum];; (*SWP) sp|Q9AXQ3|IF5A4_SOLLC (e_value=1e-113) Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G13950.1 (e_value=1e-101) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc12g010060.1.1 (e_value=8e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3203778-3206878 transcript_region:SL2.40ch12:3203778..3206878- go_terms:GO:0045905 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 ***- Q207T7_GYMCO); contains Interpro domain(s) IPR019769 Translation elongation factor, IF5A, hypusine site "; GO:0045905 NbS00020106g0002.1 protein AED:0.07 eAED:0.07 QI:725|1|1|1|0.8|0.66|6|225|371; (*GB) gi|225445871|ref|XP_002276173.1| (e_value=3e-151) PREDICTED: probable GMP synthase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=1e-50) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G57970.2 (e_value=6e-125) | Symbols: | DNA glycosylase superfamily protein | chr5:23467316-23468910 FORWARD LENGTH=347;; (*ITAG) Solyc12g010050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3197533-3200960 transcript_region:SL2.40ch12:3197533..3200960+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00001107g0012.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|109; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00001107g0016.1 protein AED:0.26 eAED:0.26 QI:342|0.92|1|1|0.85|0.86|15|591|520; (*GB) gi|296088117|emb|CBI35506.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-54) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G38470.1 (e_value=2e-145) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc04g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55618968-55632414 transcript_region:SL2.40ch04:55618968..55632414- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00001107g0005.1 protein AED:0.19 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|224131872|ref|XP_002328129.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|O65499|ZAT3_ARATH (e_value=8e-61) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT4G35280.1 (e_value=6e-62) | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283 REVERSE LENGTH=284;; (*ITAG) Solyc06g060480.1.1 (e_value=6e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34901141-34901950 transcript_region:SL2.40ch06:34901141..34901950- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00001107g0018.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0.5|0.33|3|0|479 NbS00001107g0017.1 protein AED:0.11 eAED:0.41 QI:0|0|0.33|1|0.5|0.33|3|237|260 NbS00008937g0106.1 protein AED:0.22 eAED:0.23 QI:0|0.62|0.55|0.88|1|1|9|0|892 NbS00025610g0003.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|0|0|3|0|125; (*GB) gi|224107393|ref|XP_002314468.1| (e_value=4e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|O94481|TFC5_SCHPO (e_value=4e-14) Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdp1 PE=2 SV=1;; (*TAIR) AT4G39160.2 (e_value=8e-31) | Symbols: | Homeodomain-like superfamily protein | chr4:18236828-18240433 FORWARD LENGTH=624;; (*ITAG) Solyc02g081640.2.1 (e_value=8e-58) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00009858g0020.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.42|1|0.5|0.57|7|0|601; (*GB) gi|147859456|emb|CAN83544.1| (e_value=0.0) hypothetical protein VITISV_021077 [Vitis vinifera];; (*TAIR) AT1G15910.1 (e_value=4e-167) | Symbols: | XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634;; (*ITAG) Solyc03g117040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60351139-60357181 transcript_region:SL2.40ch03:60351139..60357181- functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00009858g0018.1 protein AED:0.06 eAED:0.06 QI:85|1|1|1|0.75|0.6|5|340|303; (*GB) gi|224075688|ref|XP_002304723.1| (e_value=5e-152) aquaporin, MIP family, NIP subfamily [Populus trichocarpa];; (*SWP) sp|Q9SAI4|NIP61_ARATH (e_value=8e-136) Aquaporin NIP6-1 OS=Arabidopsis thaliana GN=NIP6-1 PE=1 SV=1;; (*TAIR) AT1G80760.1 (e_value=6e-137) | Symbols: NIP6;1, NIP6, NLM7 | NOD26-like intrinsic protein 6;1 | chr1:30350640-30352015 REVERSE LENGTH=305;; (*ITAG) Solyc03g117050.2.1 (e_value=3e-173) genomic_reference:SL2.40ch03 gene_region:60369198-60372337 transcript_region:SL2.40ch03:60369198..60372337+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00009858g0005.1 protein AED:0.07 eAED:0.07 QI:285|0|0.5|1|0|0.5|2|0|275; (*GB) gi|225465508|ref|XP_002272165.1| (e_value=0.0) PREDICTED: probable CCR4-associated factor 1 homolog 7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SAI2|CAF1F_ARATH (e_value=5e-163) Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1;; (*TAIR) AT1G80780.2 (e_value=4e-164) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:30358517-30359341 FORWARD LENGTH=274;; (*ITAG) Solyc03g117030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60347167-60347991 transcript_region:SL2.40ch03:60347167..60347991+ go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00009858g0019.1 protein AED:0.47 eAED:0.48 QI:0|0.71|0.62|0.75|1|1|8|10|345; (*GB) gi|225465498|ref|XP_002271807.1| (e_value=4e-115) PREDICTED: stromal cell-derived factor 2-like protein [Vitis vinifera];; (*SWP) sp|Q93ZE8|SDF2_ARATH (e_value=1e-115) Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1;; (*TAIR) AT2G25110.1 (e_value=1e-116) | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derived factor 2-like protein precursor | chr2:10684428-10685838 FORWARD LENGTH=218;; (*ITAG) Solyc03g117020.2.1 (e_value=1e-162) genomic_reference:SL2.40ch03 gene_region:60340731-60345557 transcript_region:SL2.40ch03:60340731..60345557+ go_terms:GO:0016020 functional_description:"Stromal cell-derived factor 2 (AHRD V1 *--- B6TVP8_MAIZE); contains Interpro domain(s) IPR003608 MIR "; GO:0016020 NbC24836152g0001.1 protein AED:0.29 eAED:0.29 QI:72|1|0|1|0|0|2|0|75; (*GB) gi|224103771|ref|XP_002313187.1| (e_value=7e-18) nucleobase ascorbate transporter [Populus trichocarpa];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=1e-16) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.4 (e_value=9e-18) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25246748 FORWARD LENGTH=476;; (*ITAG) Solyc01g106920.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:86388409-86392269 transcript_region:SL2.40ch01:86388409..86392269- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00010021g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|255539783|ref|XP_002510956.1| (e_value=2e-123) peroxisomal biogenesis factor, putative [Ricinus communis];; (*SWP) sp|Q7XU74|PX114_ORYSJ (e_value=1e-106) Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2;; (*TAIR) AT3G47430.1 (e_value=3e-105) | Symbols: PEX11B | peroxin 11B | chr3:17480798-17481692 FORWARD LENGTH=227;; (*ITAG) Solyc03g093180.1.1 (e_value=1e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:47830010-47830684 transcript_region:SL2.40ch03:47830010..47830684+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-4 (AHRD V1 ***- PX114_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00010021g0001.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|47825035|gb|AAT38805.1| (e_value=4e-22) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=7e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010021g0016.1 protein AED:0.43 eAED:0.60 QI:0|0|0|1|0|0.33|3|0|76 NbS00010021g0015.1 protein AED:0.42 eAED:0.67 QI:0|0|0|0.75|0|0.12|8|0|212; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010021g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0.85|1|1|1|7|0|359; (*GB) gi|297795951|ref|XP_002865860.1| (e_value=5e-141) hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q5R8W6|LC7L3_PONAB (e_value=6e-53) Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1;; (*TAIR) AT5G51410.3 (e_value=4e-142) | Symbols: | LUC7 N_terminus domain-containing protein | chr5:20881821-20883577 REVERSE LENGTH=334;; (*ITAG) Solyc03g093160.2.1 (e_value=7e-161) genomic_reference:SL2.40ch03 gene_region:47808883-47814643 transcript_region:SL2.40ch03:47808883..47814643- go_terms:GO:0050733,GO:0019899 functional_description:"LUC7-like 2 (AHRD V1 *--- Q6NVN5_XENTR); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0050733,GO:0019899 NbS00010021g0014.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|108 NbS00010021g0013.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|0|0|2|0|95 NbS00045678g0003.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|1|1|3|0|177 NbS00009436g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|661; (*GB) gi|225454898|ref|XP_002276015.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q3E9N1|PP359_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2;; (*TAIR) AT4G39952.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:18527680-18530007 FORWARD LENGTH=775;; (*ITAG) Solyc11g008970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3132342-3134627 transcript_region:SL2.40ch11:3132342..3134627+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M977_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000758g0014.1 protein AED:0.16 eAED:0.16 QI:265|1|1|1|0.75|0.8|5|358|189; (*GB) gi|62183959|gb|AAX73300.1| (e_value=2e-124) putative pollen specific LIM domain-containing protein [Solanum lycopersicum];; (*SWP) sp|P29675|SF3_HELAN (e_value=4e-90) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=2e-94) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc06g071310.2.1 (e_value=4e-127) genomic_reference:SL2.40ch06 gene_region:40271283-40274530 transcript_region:SL2.40ch06:40271283..40274530+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00000758g0021.1 protein AED:0.15 eAED:0.15 QI:205|1|1|1|0.85|0.86|15|393|532; (*GB) gi|62183958|gb|AAX73299.1| (e_value=0.0) putative permease I [Solanum lycopersicum];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc06g071330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40280501-40289831 transcript_region:SL2.40ch06:40280501..40289831- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00000758g0015.1 protein AED:0.18 eAED:0.19 QI:0|1|0|1|1|1|2|0|142; (*GB) gi|62733643|gb|AAX95759.1| (e_value=2e-45) T10O24.15, related [Solanum lycopersicum];; (*TAIR) AT1G60010.1 (e_value=3e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:22095660-22096434 REVERSE LENGTH=173;; (*ITAG) Solyc06g071320.2.1 (e_value=4e-48) genomic_reference:SL2.40ch06 gene_region:40276476-40277431 transcript_region:SL2.40ch06:40276476..40277431- functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00000758g0022.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|0.5|0|3|0|75; (*GB) gi|113205157|gb|AAX95758.2| (e_value=7e-40) xanthine/uracil permease family protein [Solanum lycopersicum];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=5e-34) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.4 (e_value=2e-35) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25246748 FORWARD LENGTH=476;; (*ITAG) Solyc06g071330.2.1 (e_value=6e-38) genomic_reference:SL2.40ch06 gene_region:40280501-40289831 transcript_region:SL2.40ch06:40280501..40289831- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00036407g0001.1 protein AED:0.18 eAED:0.24 QI:0|0|0|1|1|1|5|0|362; (*GB) gi|225430658|ref|XP_002268375.1| (e_value=1e-126) PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Vitis vinifera];; (*SWP) sp|Q94JX6|PP391_ARATH (e_value=1e-112) Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2;; (*TAIR) AT5G18390.1 (e_value=1e-113) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:6090954-6092333 FORWARD LENGTH=459;; (*ITAG) Solyc09g097840.1.1 (e_value=2e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67113261-67114673 transcript_region:SL2.40ch09:67113261..67114673+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LXU6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021023g0009.1 protein AED:0.00 eAED:0.00 QI:4|1|1|1|0.25|0.4|5|384|104 NbS00021023g0008.1 protein AED:0.10 eAED:0.10 QI:223|1|1|1|1|1|4|376|329; (*GB) gi|77416923|gb|ABA81857.1| (e_value=0.0) ripening regulated protein-like [Solanum tuberosum];; (*SWP) sp|Q9SV68|QORH_ARATH (e_value=0.0) Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1;; (*TAIR) AT4G13010.1 (e_value=0.0) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr4:7600682-7602567 FORWARD LENGTH=329;; (*ITAG) Solyc09g059030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:48608361-48611952 transcript_region:SL2.40ch09:48608361..48611952- go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* Q637W0_BACCZ); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00030953g0012.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0.5|2|426|164; (*GB) gi|351720899|ref|NP_001235400.1| (e_value=1e-79) uncharacterized protein LOC100499998 [Glycine max];; (*SWP) sp|Q9C944|H2AV3_ARATH (e_value=2e-74) Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1;; (*TAIR) AT1G52740.1 (e_value=2e-75) | Symbols: HTA9 | histone H2A protein 9 | chr1:19645409-19646221 FORWARD LENGTH=134;; (*ITAG) Solyc12g006830.1.1 (e_value=7e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1248331-1251609 transcript_region:SL2.40ch12:1248331..1251609- go_terms:GO:0032183 functional_description:"Histone H2A (AHRD V1 ***- C6T0M0_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0032183 NbS00030953g0005.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|511; (*GB) gi|164564732|dbj|BAF98214.1| (e_value=0.0) CM0216.300.nc [Lotus japonicus];; (*SWP) sp|O48780|KCS11_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=0.0) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc12g006820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1244804-1246306 transcript_region:SL2.40ch12:1244804..1246306+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00030953g0020.1 protein AED:0.17 eAED:0.18 QI:0|0.71|0.62|1|0.57|0.62|8|299|276; (*GB) gi|225445392|ref|XP_002284984.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100264696 [Vitis vinifera];; (*TAIR) AT5G20140.1 (e_value=4e-151) | Symbols: | SOUL heme-binding family protein | chr5:6799047-6800892 REVERSE LENGTH=378;; (*ITAG) Solyc12g006810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1238636-1241985 transcript_region:SL2.40ch12:1238636..1241985+ go_terms:GO:0005488 functional_description:"Soul heme-binding family protein (AHRD V1 **** D7LZY3_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0005488 NbS00030953g0013.1 protein AED:0.22 eAED:0.22 QI:0|0.42|0.4|1|0.85|0.73|15|0|1079; (*GB) gi|255550034|ref|XP_002516068.1| (e_value=3e-158) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=6e-104) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.2 (e_value=5e-105) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=842;; (*ITAG) Solyc03g120110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62653198-62656724 transcript_region:SL2.40ch03:62653198..62656724+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00030953g0019.1 protein AED:0.18 eAED:0.23 QI:0|0.5|0.2|1|0.5|0.6|5|0|152; (*GB) gi|388517553|gb|AFK46838.1| (e_value=9e-68) unknown [Medicago truncatula];; (*TAIR) AT5G20140.2 (e_value=3e-61) | Symbols: | SOUL heme-binding family protein | chr5:6799066-6800892 REVERSE LENGTH=395;; (*ITAG) Solyc12g006810.1.1 (e_value=8e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1238636-1241985 transcript_region:SL2.40ch12:1238636..1241985+ go_terms:GO:0005488 functional_description:"Soul heme-binding family protein (AHRD V1 **** D7LZY3_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; GO:0005488 NbS00001691g0008.1 protein AED:0.29 eAED:0.43 QI:0|0|0|0.85|0|0.14|7|0|274; (*GB) gi|297742739|emb|CBI35373.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g008880.2.1 (e_value=3e-61) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00003433g0008.1 protein AED:0.07 eAED:0.08 QI:504|1|0.5|1|1|1|2|0|504; (*GB) gi|224085970|ref|XP_002307759.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6CC39|PUS1_YARLI (e_value=1e-41) tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PUS1 PE=3 SV=1;; (*TAIR) AT1G20370.1 (e_value=5e-162) | Symbols: | Pseudouridine synthase family protein | chr1:7051846-7053588 REVERSE LENGTH=549;; (*ITAG) Solyc04g082070.2.1 (e_value=4e-98) genomic_reference:SL2.40ch04 gene_region:63452483-63454756 transcript_region:SL2.40ch04:63452483..63454756- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase family protein (AHRD V1 *-** B6TLN6_MAIZE); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00003433g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|224061939|ref|XP_002300674.1| (e_value=7e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBZ2|SKI23_ARATH (e_value=9e-21) F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1;; (*TAIR) AT2G17030.1 (e_value=7e-22) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399108-7400650 FORWARD LENGTH=407;; (*ITAG) Solyc04g082060.2.1 (e_value=4e-138) genomic_reference:SL2.40ch04 gene_region:63449640-63452168 transcript_region:SL2.40ch04:63449640..63452168- functional_description:"F-box family protein (AHRD V1 ***- B9H1M6_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00007145g0009.1 protein AED:0.15 eAED:0.15 QI:404|0.83|0.84|1|0.91|0.92|13|632|711; (*GB) gi|225452200|ref|XP_002266771.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243984 [Vitis vinifera];; (*TAIR) AT5G40740.1 (e_value=0.0) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741;; (*ITAG) Solyc02g067990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32628874-32637710 transcript_region:SL2.40ch02:32628874..32637710- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 ***- Q9FM25_ARATH)"; NbS00008087g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.5|1|0.8|0.83|6|0|209; (*GB) gi|242095944|ref|XP_002438462.1| (e_value=3e-97) hypothetical protein SORBIDRAFT_10g020030 [Sorghum bicolor];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=4e-97) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=3e-98) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc07g066080.2.1 (e_value=3e-100) genomic_reference:SL2.40ch07 gene_region:64830179-64832100 transcript_region:SL2.40ch07:64830179..64832100+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00031547g0003.1 protein AED:0.04 eAED:0.04 QI:465|1|1|1|1|1|9|729|464; (*GB) gi|357477329|ref|XP_003608950.1| (e_value=0.0) hypothetical protein MTR_4g106730 [Medicago truncatula];; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=0.0) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=0.0) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g062290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49709104-49714242 transcript_region:SL2.40ch12:49709104..49714242- go_terms:GO:0004252 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0004252 NbS00008944g0010.1 protein AED:0.31 eAED:0.31 QI:43|0.84|0.78|0.92|0.92|0.85|14|0|377; (*GB) gi|359484562|ref|XP_002284044.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=7e-169) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28860.2 (e_value=0.0) | Symbols: ckl4 | casein kinase I-like 4 | chr4:14246359-14248823 FORWARD LENGTH=378;; (*ITAG) Solyc12g007280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1688953-1693741 transcript_region:SL2.40ch12:1688953..1693741+ go_terms:GO:0006468 functional_description:"Casein kinase 1-like protein 4 (AHRD V1 ***- Q8LPI7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008944g0116.1 protein AED:0.15 eAED:0.22 QI:0|0.3|0.09|0.90|0.4|0.27|11|0|886 NbS00008944g0109.1 protein AED:0.31 eAED:0.31 QI:314|0.6|0.5|0.83|0.8|0.66|6|0|312 NbS00008944g0120.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.25|1|0.66|0.75|4|0|278 NbS00008944g0111.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|98 NbS00004625g0003.1 protein AED:0.31 eAED:0.34 QI:0|0.33|0|1|0.66|0.75|4|0|224; (*GB) gi|225460573|ref|XP_002278721.1| (e_value=4e-70) PREDICTED: ran-binding protein 10-like [Vitis vinifera];; (*SWP) sp|Q4Z8K6|RBP9X_DROME (e_value=4e-28) Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1;; (*TAIR) AT4G09340.1 (e_value=4e-65) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr4:5925015-5927597 REVERSE LENGTH=447;; (*ITAG) Solyc03g033380.2.1 (e_value=5e-94) genomic_reference:SL2.40ch03 gene_region:9216291-9232662 transcript_region:SL2.40ch03:9216291..9232662- go_terms:GO:0008536 functional_description:"Ran-binding protein 9 (AHRD V1 **-* B6UAR9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008536 NbS00005734g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|145; (*GB) gi|357482951|ref|XP_003611762.1| (e_value=1e-29) hypothetical protein MTR_5g017580 [Medicago truncatula];; (*TAIR) AT5G66800.1 (e_value=3e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671433-26672116 FORWARD LENGTH=183;; (*ITAG) Solyc02g065020.1.1 (e_value=1e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30718020-30718665 transcript_region:SL2.40ch02:30718020..30718665+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005734g0109.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|1|1|2|0|357 NbS00005734g0106.1 protein AED:0.04 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|191 NbS00000523g0019.1 protein AED:0.01 eAED:0.01 QI:152|1|1|1|0.5|0.33|3|324|317; (*GB) gi|350534880|ref|NP_001234676.1| (e_value=0.0) uncharacterized protein LOC543709 [Solanum lycopersicum];; (*SWP) sp|Q3ZBY7|DEGS1_BOVIN (e_value=2e-115) Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1;; (*TAIR) AT4G04930.1 (e_value=0.0) | Symbols: DES-1-LIKE | fatty acid desaturase family protein | chr4:2509236-2510918 FORWARD LENGTH=332;; (*ITAG) Solyc10g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3056358-3059101 transcript_region:SL2.40ch10:3056358..3059101+ go_terms:GO:0042284 functional_description:"Sphingolipid delta 4 desaturase (AHRD V1 **** Q5AJX2_CANAL); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site "; GO:0042284 NbS00000523g0025.1 protein AED:0.04 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|465|459; (*GB) gi|359497206|ref|XP_002262853.2| (e_value=4e-146) PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=1e-100) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.1 (e_value=7e-102) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926110-8927722 FORWARD LENGTH=490;; (*ITAG) Solyc02g078330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37634979-37638173 transcript_region:SL2.40ch02:37634979..37638173- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000523g0026.1 protein AED:0.32 eAED:0.34 QI:0|0|0|0.66|0.2|0.16|6|0|435; (*GB) gi|224053244|ref|XP_002297734.1| (e_value=1e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT5G07900.1 (e_value=3e-38) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc12g010650.1.1 (e_value=7e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00000523g0023.1 protein AED:0.59 eAED:0.73 QI:0|0|0|0.6|1|1|5|0|237 NbS00000523g0007.1 protein AED:0.35 eAED:0.35 QI:825|1|1|1|1|1|4|74|182; (*GB) gi|356521368|ref|XP_003529328.1| (e_value=8e-55) PREDICTED: uncharacterized protein LOC100783387 [Glycine max];; (*TAIR) AT1G28240.1 (e_value=2e-54) | Symbols: | Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581;; (*ITAG) Solyc02g078180.2.1 (e_value=1e-71) genomic_reference:SL2.40ch02 gene_region:37521797-37528390 transcript_region:SL2.40ch02:37521797..37528390+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00000523g0028.1 protein AED:0.41 eAED:0.41 QI:10|0|0|0.75|0.33|0.25|4|0|212; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-34) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00000523g0029.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|0|0.33|3|0|101; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00000523g0011.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.25|1|1|4|0|103; (*GB) gi|255556023|ref|XP_002519046.1| (e_value=3e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G21720.2 (e_value=4e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, male gametophyte, root, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage. | chr4:11543762-11544274 FORWARD LENGTH=107;; (*ITAG) Solyc10g009040.2.1 (e_value=4e-46) genomic_reference:SL2.40ch10 gene_region:3060366-3069973 transcript_region:SL2.40ch10:3060366..3069973- functional_description:"Unknown Protein (AHRD V1)"; NbS00000523g0022.1 protein AED:0.16 eAED:0.29 QI:0|0|0|1|0|0|4|0|298; (*GB) gi|224131788|ref|XP_002328108.1| (e_value=1e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11590.1 (e_value=5e-42) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc06g074190.2.1 (e_value=1e-116) genomic_reference:SL2.40ch06 gene_region:42262927-42265722 transcript_region:SL2.40ch06:42262927..42265722- functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00000523g0031.1 protein AED:0.43 eAED:0.70 QI:0|0|0|1|0|0|4|0|210; (*GB) gi|356521368|ref|XP_003529328.1| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100783387 [Glycine max];; (*TAIR) AT1G28240.1 (e_value=4e-29) | Symbols: | Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581;; (*ITAG) Solyc02g078180.2.1 (e_value=3e-33) genomic_reference:SL2.40ch02 gene_region:37521797-37528390 transcript_region:SL2.40ch02:37521797..37528390+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00015926g0002.1 protein AED:0.18 eAED:0.18 QI:15|0|0.5|1|0|0.5|2|291|268; (*GB) gi|224090783|ref|XP_002309080.1| (e_value=1e-104) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37730.1 (e_value=6e-106) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=9e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00015926g0011.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|450; (*GB) gi|171854647|dbj|BAG16513.1| (e_value=0.0) flavonoid glucoyltransferase UGT73E2 [Antirrhinum majus];; (*SWP) sp|Q9ZQ96|U73C3_ARATH (e_value=4e-169) UDP-glycosyltransferase 73C3 OS=Arabidopsis thaliana GN=UGT73C3 PE=2 SV=1;; (*TAIR) AT2G36780.1 (e_value=3e-170) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15417618-15419108 REVERSE LENGTH=496;; (*ITAG) Solyc12g042600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43397046-43398934 transcript_region:SL2.40ch12:43397046..43398934- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00015926g0010.1 protein AED:0.12 eAED:0.18 QI:0|0|0|1|0|0|6|0|425; (*GB) gi|147864249|emb|CAN83016.1| (e_value=3e-117) hypothetical protein VITISV_041695 [Vitis vinifera];; (*SWP) sp|Q9SCP6|U73D1_ARATH (e_value=2e-95) UDP-glycosyltransferase 73D1 OS=Arabidopsis thaliana GN=UGT73D1 PE=3 SV=1;; (*TAIR) AT3G53150.1 (e_value=2e-96) | Symbols: UGT73D1 | UDP-glucosyl transferase 73D1 | chr3:19697736-19699259 REVERSE LENGTH=507;; (*ITAG) Solyc09g008510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1996000-1997493 transcript_region:SL2.40ch09:1996000..1997493- go_terms:GO:0080046,GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080046,GO:0080044 NbS00003236g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|759; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=2e-135) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=5e-122) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=5e-55) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007170.2.1 (e_value=1e-138) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00010350g0003.1 protein AED:0.18 eAED:0.18 QI:68|1|0.66|1|1|1|3|0|185; (*GB) gi|255562170|ref|XP_002522093.1| (e_value=4e-70) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G42975.1 (e_value=2e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873998-17874820 FORWARD LENGTH=187;; (*ITAG) Solyc07g056240.2.1 (e_value=1e-84) genomic_reference:SL2.40ch07 gene_region:61404309-61406623 transcript_region:SL2.40ch07:61404309..61406623- functional_description:"Unknown Protein (AHRD V1)"; NbS00010350g0017.1 protein AED:0.28 eAED:0.33 QI:3|0.5|0|0.66|0|0|3|0|109; (*GB) gi|84688906|gb|ABC61502.1| (e_value=6e-43) AGO1-1, partial [Nicotiana benthamiana];; (*SWP) sp|O04379|AGO1_ARATH (e_value=3e-36) Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1;; (*TAIR) AT1G48410.3 (e_value=2e-37) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1050;; (*ITAG) Solyc06g072300.2.1 (e_value=2e-44) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00010350g0011.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|0.33|0.75|4|144|283; (*GB) gi|225446813|ref|XP_002279242.1| (e_value=1e-81) PREDICTED: putative ferric-chelate reductase 1 [Vitis vinifera];; (*TAIR) AT4G18260.1 (e_value=2e-56) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr4:10093524-10097337 REVERSE LENGTH=545;; (*ITAG) Solyc07g056230.2.1 (e_value=2e-136) genomic_reference:SL2.40ch07 gene_region:61402318-61404293 transcript_region:SL2.40ch07:61402318..61404293+ functional_description:"Cytochrome B561-related protein (AHRD V1 **-- Q1H8M6_BETVU); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00010350g0015.1 protein AED:0.38 eAED:0.49 QI:0|0|0|1|0|0.4|5|0|289; (*GB) gi|326506326|dbj|BAJ86481.1| (e_value=2e-19) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q9ZQI3|GDL40_ARATH (e_value=1e-12) GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana GN=At2g27360 PE=2 SV=1;; (*TAIR) AT1G31550.1 (e_value=4e-14) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:11295635-11297284 REVERSE LENGTH=391;; (*ITAG) Solyc01g108640.1.1 (e_value=2e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00010350g0014.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|0|0.5|2|0|84 NbS00010350g0018.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0|2|0|337; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=2e-34) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q9FXJ1|GDL6_ARATH (e_value=2e-28) GDSL esterase/lipase At1g28570 OS=Arabidopsis thaliana GN=At1g28570 PE=2 SV=1;; (*TAIR) AT1G28570.1 (e_value=2e-29) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr1:10041838-10044112 REVERSE LENGTH=389;; (*ITAG) Solyc01g108640.1.1 (e_value=5e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00011932g0016.1 protein AED:0.27 eAED:0.27 QI:199|1|0.71|1|0.83|0.85|7|451|261; (*GB) gi|15778154|dbj|BAB68527.1| (e_value=0.0) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93214|14339_SOLLC (e_value=0.0) 14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2;; (*TAIR) AT2G42590.2 (e_value=2e-147) | Symbols: GRF9, GF14 MU | general regulatory factor 9 | chr2:17732118-17733775 REVERSE LENGTH=262;; (*ITAG) Solyc07g053260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59058945-59063496 transcript_region:SL2.40ch07:59058945..59063496+ go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00011932g0017.1 protein AED:0.34 eAED:0.34 QI:149|0.33|0.25|1|0.66|0.75|4|0|155; (*GB) gi|302143421|emb|CBI21982.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9D5U5|HDHD1_MOUSE (e_value=1e-12) Pseudouridine-5'-monophosphatase OS=Mus musculus GN=Hdhd1 PE=2 SV=1;; (*TAIR) AT4G21470.1 (e_value=5e-29) | Symbols: ATFMN/FHY, FMN/FHY | riboflavin kinase/FMN hydrolase | chr4:11431284-11433197 FORWARD LENGTH=379;; (*ITAG) Solyc07g053270.2.1 (e_value=1e-68) genomic_reference:SL2.40ch07 gene_region:59064677-59071993 transcript_region:SL2.40ch07:59064677..59071993+ go_terms:GO:0003919,GO:0008531 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 ***- Q109K4_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0003919,GO:0008531 NbS00011932g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|270; (*ITAG) Solyc11g018650.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8853241-8853468 transcript_region:SL2.40ch11:8853241..8853468- functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 **-- FRS8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00011932g0019.1 protein AED:0.07 eAED:0.07 QI:0|0.90|1|1|0.90|0.91|12|311|627; (*GB) gi|193290660|gb|ACF17638.1| (e_value=0.0) putative ketol-acid reductoisomerase [Capsicum annuum];; (*SWP) sp|Q05758|ILV5_ARATH (e_value=0.0) Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2;; (*TAIR) AT3G58610.3 (e_value=0.0) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc07g053280.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59072715-59077834 transcript_region:SL2.40ch07:59072715..59077834- go_terms:GO:0000287,GO:0070402 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D6QSY0_CATRO); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0000287,GO:0070402 NbS00011932g0014.1 protein AED:0.36 eAED:0.36 QI:9|0.87|0.77|1|0.87|0.88|9|171|282; (*GB) gi|255575275|ref|XP_002528541.1| (e_value=2e-100) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G31040.1 (e_value=3e-93) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc07g055050.2.1 (e_value=4e-117) genomic_reference:SL2.40ch07 gene_region:60505700-60510259 transcript_region:SL2.40ch07:60505700..60510259+ functional_description:"ATP synthase I-like protein (AHRD V1 **-- A8HNA8_CHLRE); contains Interpro domain(s) IPR008413 ATPase, F0 complex, subunit I, bacillus-type "; NbS00020602g0008.1 protein AED:0.07 eAED:0.07 QI:41|1|1|1|1|1|4|612|169; (*GB) gi|233955417|gb|ACQ91204.1| (e_value=1e-107) truncated hemoglobin [Carica papaya];; (*SWP) sp|O31607|TRHBO_BACSU (e_value=4e-16) Group 2 truncated hemoglobin yjbI OS=Bacillus subtilis (strain 168) GN=yjbI PE=1 SV=1;; (*TAIR) AT4G32690.1 (e_value=7e-102) | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:15765486-15766862 FORWARD LENGTH=175;; (*ITAG) Solyc08g068070.2.1 (e_value=2e-118) genomic_reference:SL2.40ch08 gene_region:54369971-54375358 transcript_region:SL2.40ch08:54369971..54375358+ go_terms:GO:0005344 functional_description:"Globin (AHRD V1 ***- C8WRW6_ALIAD); contains Interpro domain(s) IPR001486 Globin, truncated bacterial-like "; GO:0005344 NbS00012881g0003.1 protein AED:0.02 eAED:0.02 QI:222|0.85|0.87|1|0.57|0.75|8|0|716; (*GB) gi|147789454|emb|CAN73312.1| (e_value=0.0) hypothetical protein VITISV_012096 [Vitis vinifera];; (*SWP) sp|Q6RHR6|DMI1_MEDTR (e_value=0.0) Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1;; (*TAIR) AT5G49960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc10g044890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24351349-24359299 transcript_region:SL2.40ch10:24351349..24359299+ go_terms:GO:0008152 functional_description:"DMI1 protein (Fragment) (AHRD V1 *-*- A9DNI2_MEDTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00012757g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|349; (*GB) gi|225445240|ref|XP_002280978.1| (e_value=1e-153) PREDICTED: polyol transporter 5 [Vitis vinifera];; (*SWP) sp|Q8VZ80|PLT5_ARATH (e_value=1e-100) Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2;; (*TAIR) AT3G18830.1 (e_value=7e-102) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539;; (*ITAG) Solyc07g024030.2.1 (e_value=3e-180) genomic_reference:SL2.40ch07 gene_region:23997748-23999260 transcript_region:SL2.40ch07:23997748..23999260+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 2 (AHRD V1 ***- GTR2_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00012757g0010.1 protein AED:0.18 eAED:0.18 QI:689|1|0.75|1|1|1|4|0|601; (*GB) gi|255546517|ref|XP_002514318.1| (e_value=4e-102) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G32350.1 (e_value=1e-41) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr4:15617634-15620642 FORWARD LENGTH=732;; (*ITAG) Solyc07g022860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23025719-23027896 transcript_region:SL2.40ch07:23025719..23027896- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00007448g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.90|0.83|1|1|1|12|0|708; (*GB) gi|348659057|gb|AEP82766.1| (e_value=0.0) copalyl diphosphate synthase [Solanum lycopersicum];; (*SWP) sp|O04408|KSA_PEA (e_value=0.0) Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G02780.1 (e_value=0.0) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802;; (*ITAG) Solyc06g084240.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:45708352-45713252 transcript_region:SL2.40ch06:45708352..45713252- go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U3_ORYRU); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00034354g0005.1 protein AED:0.20 eAED:0.20 QI:148|1|0.5|1|1|1|2|0|264; (*GB) gi|225444948|ref|XP_002282397.1| (e_value=2e-104) PREDICTED: uncharacterized protein LOC100262870 [Vitis vinifera];; (*TAIR) AT2G19580.1 (e_value=2e-100) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270;; (*ITAG) Solyc03g059390.2.1 (e_value=2e-145) genomic_reference:SL2.40ch03 gene_region:26386349-26388448 transcript_region:SL2.40ch03:26386349..26388448- go_terms:GO:0016021 functional_description:"Senescence-associated protein 5 (AHRD V1 ***- O81655_HEMSP); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00024317g0005.1 protein AED:0.04 eAED:0.04 QI:374|1|1|1|0|1|2|393|444; (*GB) gi|225458956|ref|XP_002285542.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245533 isoform 1 [Vitis vinifera];; (*TAIR) AT1G10020.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461;; (*ITAG) Solyc04g077140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59674609-59676971 transcript_region:SL2.40ch04:59674609..59676971+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00008310g0007.1 protein AED:0.06 eAED:0.08 QI:0|0|0|0.85|0.5|0.57|7|0|1059; (*GB) gi|255549323|ref|XP_002515715.1| (e_value=0.0) translation elongation factor, putative [Ricinus communis];; (*SWP) sp|Q7Z2Z2|ETUD1_HUMAN (e_value=7e-112) Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2;; (*TAIR) AT3G22980.1 (e_value=0.0) | Symbols: | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:8160269-8163316 REVERSE LENGTH=1015;; (*ITAG) Solyc11g071770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52229263-52232337 transcript_region:SL2.40ch11:52229263..52232337- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor Tu family protein (AHRD V1 **** D7L2H7_ARALY); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00009687g0011.1 protein AED:0.05 eAED:0.05 QI:105|1|1|1|0.66|1|4|536|151; (*GB) gi|225462560|ref|XP_002267649.1| (e_value=4e-85) PREDICTED: probable prefoldin subunit 5 [Vitis vinifera];; (*SWP) sp|P57742|PFD5_ARATH (e_value=2e-78) Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1;; (*TAIR) AT5G23290.1 (e_value=1e-79) | Symbols: PFD5 | prefoldin 5 | chr5:7846144-7847428 FORWARD LENGTH=151;; (*ITAG) Solyc01g008270.2.1 (e_value=1e-98) genomic_reference:SL2.40ch01 gene_region:2385892-2400050 transcript_region:SL2.40ch01:2385892..2400050+ go_terms:GO:0015631,GO:0003714 functional_description:"Prefoldin subunit 5 (AHRD V1 ***- B6TVU2_MAIZE); contains Interpro domain(s) IPR011599 Prefoldin alpha subunit "; GO:0015631,GO:0003714 NbS00009687g0003.1 protein AED:0.07 eAED:0.07 QI:539|0.75|0.55|0.88|0.87|0.88|9|0|324; (*GB) gi|356536427|ref|XP_003536739.1| (e_value=2e-150) PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial-like [Glycine max];; (*SWP) sp|P32746|PYRD_ARATH (e_value=6e-144) Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2;; (*TAIR) AT5G23300.1 (e_value=4e-145) | Symbols: PYRD | pyrimidine d | chr5:7847792-7850243 REVERSE LENGTH=460;; (*ITAG) Solyc01g008290.2.1 (e_value=2e-166) genomic_reference:SL2.40ch01 gene_region:2396758-2404877 transcript_region:SL2.40ch01:2396758..2404877+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Dihydroorotate dehydrogenase (AHRD V1 ***- B6U892_MAIZE); contains Interpro domain(s) IPR005719 Dihydroorotate dehydrogenase, class 2 "; GO:0016020,GO:0008152,GO:0055114 NbS00009687g0012.1 protein AED:0.22 eAED:0.22 QI:178|1|0.5|1|1|1|2|0|382; (*GB) gi|359492453|ref|XP_002284086.2| (e_value=4e-176) PREDICTED: serine/threonine-protein phosphatase 2A activator-like [Vitis vinifera];; (*SWP) sp|Q2KJ44|PTPA_BOVIN (e_value=3e-94) Serine/threonine-protein phosphatase 2A activator OS=Bos taurus GN=PPP2R4 PE=2 SV=1;; (*TAIR) AT4G08960.1 (e_value=1e-176) | Symbols: | phosphotyrosyl phosphatase activator (PTPA) family protein | chr4:5746326-5747994 FORWARD LENGTH=392;; (*ITAG) Solyc01g008280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2391529-2395313 transcript_region:SL2.40ch01:2391529..2395313+ go_terms:GO:0008601 functional_description:"Serine/threonine-protein phosphatase 2A activator 2 (AHRD V1 **** B6TQY2_MAIZE); contains Interpro domain(s) IPR004327 Phosphotyrosyl phosphatase activator, PTPA "; GO:0008601 NbS00009687g0005.1 protein AED:0.59 eAED:0.66 QI:0|0|0|0.4|1|1|5|0|120; (*GB) gi|356536427|ref|XP_003536739.1| (e_value=4e-62) PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial-like [Glycine max];; (*SWP) sp|P32746|PYRD_ARATH (e_value=8e-61) Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2;; (*TAIR) AT5G23300.1 (e_value=6e-62) | Symbols: PYRD | pyrimidine d | chr5:7847792-7850243 REVERSE LENGTH=460;; (*ITAG) Solyc01g008290.2.1 (e_value=8e-71) genomic_reference:SL2.40ch01 gene_region:2396758-2404877 transcript_region:SL2.40ch01:2396758..2404877+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Dihydroorotate dehydrogenase (AHRD V1 ***- B6U892_MAIZE); contains Interpro domain(s) IPR005719 Dihydroorotate dehydrogenase, class 2 "; GO:0016020,GO:0008152,GO:0055114 NbS00057828g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.9|0.81|1|0.7|0.81|11|471|331; (*GB) gi|255582662|ref|XP_002532110.1| (e_value=9e-175) suppressor of actin, putative [Ricinus communis];; (*SWP) sp|Q5R921|SAC1_PONAB (e_value=5e-63) Phosphatidylinositide phosphatase SAC1 OS=Pongo abelii GN=SACM1L PE=2 SV=1;; (*TAIR) AT3G51830.1 (e_value=2e-161) | Symbols: ATG5, SAC8 | SAC domain-containing protein 8 | chr3:19220237-19225092 FORWARD LENGTH=588;; (*ITAG) Solyc10g076590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58879381-58884032 transcript_region:SL2.40ch10:58879381..58884032+ functional_description:"Phosphatidylinositide phosphatase SAC1-like protein (AHRD V1 ***- D0N9N5_PHYIN); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; NbS00057828g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.71|1|0.66|0.57|7|0|217; (*GB) gi|359481161|ref|XP_003632584.1| (e_value=3e-106) PREDICTED: phosphatidylinositide phosphatase SAC1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q6GM29|SAC1_XENLA (e_value=3e-21) Phosphatidylinositide phosphatase SAC1 OS=Xenopus laevis GN=sacm1l PE=2 SV=1;; (*TAIR) AT3G51830.1 (e_value=3e-93) | Symbols: ATG5, SAC8 | SAC domain-containing protein 8 | chr3:19220237-19225092 FORWARD LENGTH=588;; (*ITAG) Solyc10g076580.1.1 (e_value=6e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58872135-58879143 transcript_region:SL2.40ch10:58872135..58879143+ functional_description:"Phosphatidylinositide phosphatase SAC1 (AHRD V1 ***- D0NSZ0_PHYIN); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; NbS00056580g0001.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|1272345|gb|AAA97901.1| (e_value=0.0) secreted glycoprotein 1 [Ipomoea trifida];; (*SWP) sp|O81905|SD18_ARATH (e_value=6e-145) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=4e-146) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc02g079590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38694213-38700089 transcript_region:SL2.40ch02:38694213..38700089+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00027767g0007.1 protein AED:0.08 eAED:0.08 QI:234|0.5|0.33|1|1|1|3|0|637; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=3e-142) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=2e-55) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=1e-56) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc03g115940.2.1 (e_value=4e-161) genomic_reference:SL2.40ch03 gene_region:59566770-59569400 transcript_region:SL2.40ch03:59566770..59569400- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00024181g0004.1 protein AED:0.24 eAED:0.24 QI:149|1|1|1|0.83|0.71|7|394|246; (*GB) gi|225433856|ref|XP_002264306.1| (e_value=1e-125) PREDICTED: gamma-secretase subunit APH1-like [Vitis vinifera];; (*SWP) sp|Q8L9G7|APH1_ARATH (e_value=2e-124) Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2;; (*TAIR) AT2G31440.1 (e_value=2e-125) | Symbols: | INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:13399309-13400971 REVERSE LENGTH=250;; (*ITAG) Solyc06g073410.2.1 (e_value=4e-143) genomic_reference:SL2.40ch06 gene_region:41630217-41636100 transcript_region:SL2.40ch06:41630217..41636100+ go_terms:GO:0016021 functional_description:"Gamma-secretase subunit APH-1B (AHRD V1 ***- B6TH01_MAIZE); contains Interpro domain(s) IPR009294 Aph-1 "; GO:0016021 NbS00012682g0003.1 protein AED:0.19 eAED:0.19 QI:201|0.91|0.92|1|0.75|0.69|13|632|328; (*GB) gi|297744466|emb|CBI37728.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4JN00|CSTR4_ARATH (e_value=0.0) CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1;; (*TAIR) AT4G35335.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr4:16807286-16810015 FORWARD LENGTH=352;; (*ITAG) Solyc11g008590.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2778593-2785148 transcript_region:SL2.40ch11:2778593..2785148+ go_terms:GO:0016021 functional_description:"UDP-galactose transporter-like protein (AHRD V1 *-*- O65494_ARATH); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0016021 NbS00009769g0013.1 protein AED:0.17 eAED:0.17 QI:1179|0.33|0.28|1|0.66|0.57|7|0|478; (*GB) gi|22128587|gb|AAM52339.1| (e_value=4e-150) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=3e-76) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=2e-77) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007300.1.1 (e_value=5e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00009769g0010.1 protein AED:0.29 eAED:0.29 QI:157|1|1|1|0.33|0.5|4|179|95; (*GB) gi|255551062|ref|XP_002516579.1| (e_value=2e-57) 60S ribosomal protein L37, putative [Ricinus communis];; (*SWP) sp|Q8LFH7|RL371_ARATH (e_value=1e-56) 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1;; (*TAIR) AT1G15250.1 (e_value=8e-58) | Symbols: | Zinc-binding ribosomal protein family protein | chr1:5248825-5249381 REVERSE LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=3e-63) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00009769g0003.1 protein AED:0.13 eAED:0.13 QI:428|0.75|0.8|1|0|0|5|413|189; (*GB) gi|225430031|ref|XP_002284227.1| (e_value=1e-73) PREDICTED: protein Mpv17 [Vitis vinifera];; (*TAIR) AT3G24570.1 (e_value=5e-70) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr3:8966675-8968530 REVERSE LENGTH=235;; (*ITAG) Solyc11g071330.1.1 (e_value=2e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51930686-51936191 transcript_region:SL2.40ch11:51930686..51936191+ go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 **-- B6SUV8_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00008380g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|256274567|gb|ACU68503.1| (e_value=3e-34) WOX3 protein [Petunia x hybrida];; (*SWP) sp|A2XZR3|WOX2_ORYSI (e_value=1e-26) Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica GN=WOX2 PE=3 SV=1;; (*TAIR) AT2G28610.1 (e_value=1e-27) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072770.1.1 (e_value=1e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53058404-53060008 transcript_region:SL2.40ch11:53058404..53060008+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00019848g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc05g010270.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4431688-4432116 transcript_region:SL2.40ch05:4431688..4432116- functional_description:"Unknown Protein (AHRD V1)"; NbS00019848g0010.1 protein AED:0.25 eAED:0.25 QI:108|1|1|1|0.72|0.75|12|307|666; (*GB) gi|156763838|emb|CAO99121.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=5e-133) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT1G26190.1 (e_value=0.0) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:9057285-9060433 REVERSE LENGTH=674;; (*ITAG) Solyc05g010340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4488286-4494949 transcript_region:SL2.40ch05:4488286..4494949+ go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0016301 NbS00019848g0017.1 protein AED:0.07 eAED:0.07 QI:22|0|0|1|0|0.25|4|0|341; (*GB) gi|297738233|emb|CBI27434.3| (e_value=5e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-24) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-25) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g005890.1.1 (e_value=2e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:572620-574076 transcript_region:SL2.40ch04:572620..574076+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00019848g0003.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|412; (*GB) gi|14009640|gb|AAK51690.1|AF307144_1 (e_value=0.0) cytosolic 6-phosphogluconate dehydrogenase [Spinacia oleracea];; (*SWP) sp|P80859|6PGD2_BACSU (e_value=3e-134) 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4;; (*TAIR) AT3G02360.1 (e_value=0.0) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr3:482498-483958 FORWARD LENGTH=486;; (*ITAG) Solyc04g005160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:106694-108109 transcript_region:SL2.40ch04:106694..108109- go_terms:GO:0004616,GO:0042802 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 **** B9N1W3_POPTR); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating "; GO:0004616,GO:0042802 NbS00002192g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|0.66|0.75|4|0|283; (*GB) gi|225432118|ref|XP_002263668.1| (e_value=4e-126) PREDICTED: polygalacturonase At1g48100-like [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=3e-114) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G48100.1 (e_value=2e-115) | Symbols: | Pectin lyase-like superfamily protein | chr1:17766921-17769625 FORWARD LENGTH=475;; (*ITAG) Solyc04g008230.2.1 (e_value=8e-143) genomic_reference:SL2.40ch04 gene_region:1901661-1904764 transcript_region:SL2.40ch04:1901661..1904764- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- B6TYD6_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00002192g0010.1 protein AED:0.22 eAED:0.22 QI:0|0.55|0.4|1|0.77|0.7|10|0|621; (*GB) gi|225424456|ref|XP_002281644.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252594 [Vitis vinifera];; (*TAIR) AT1G14710.2 (e_value=2e-119) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:5062168-5064697 REVERSE LENGTH=601;; (*ITAG) Solyc04g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1918028-1924900 transcript_region:SL2.40ch04:1918028..1924900+ functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE)"; NbS00016592g0002.1 protein AED:0.06 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|203; (*GB) gi|356556416|ref|XP_003546522.1| (e_value=3e-32) PREDICTED: uncharacterized protein LOC100817225 [Glycine max];; (*TAIR) AT5G20790.1 (e_value=1e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7040046-7040627 REVERSE LENGTH=193; NbS00038724g0017.1 protein AED:0.04 eAED:0.04 QI:243|0.66|0.75|1|1|1|4|69|440; (*GB) gi|297744196|emb|CBI37166.3| (e_value=1e-87) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04030.1 (e_value=1e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits to 1511 proteins in 238 species: Archae - 7; Bacteria - 164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses - 22; Other Eukaryotes - 943 (source: NCBI BLink). | chr1:1040597-1042313 FORWARD LENGTH=434;; (*ITAG) Solyc09g072800.2.1 (e_value=1e-155) genomic_reference:SL2.40ch09 gene_region:60996021-60999194 transcript_region:SL2.40ch09:60996021..60999194+ functional_description:"At1g04030 (Fragment) (AHRD V1 *-*- Q1W7J9_SOLLC)"; NbS00038724g0013.1 protein AED:0.11 eAED:0.11 QI:30|0.81|0.66|1|1|1|12|0|1053; (*GB) gi|212960417|gb|ACJ38666.1| (e_value=0.0) cellulose synthase [Betula luminifera];; (*SWP) sp|Q84JA6|CESA4_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1;; (*TAIR) AT5G44030.1 (e_value=0.0) | Symbols: CESA4, IRX5, NWS2 | cellulose synthase A4 | chr5:17714713-17719564 FORWARD LENGTH=1049;; (*ITAG) Solyc09g072820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61011531-61017918 transcript_region:SL2.40ch09:61011531..61017918- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B8XPP6_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00038724g0012.1 protein AED:0.21 eAED:0.21 QI:39|0.5|0.33|0.66|1|1|3|469|162; (*GB) gi|4519671|dbj|BAA75684.1| (e_value=5e-53) WERBP-1 [Nicotiana tabacum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-13) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=2e-24) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc09g072830.2.1 (e_value=1e-60) genomic_reference:SL2.40ch09 gene_region:61018842-61025055 transcript_region:SL2.40ch09:61018842..61025055- go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00038724g0018.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|1138; (*GB) gi|255571222|ref|XP_002526561.1| (e_value=0.0) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=3e-169) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.2 (e_value=1e-170) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5637467-5640496 REVERSE LENGTH=1009;; (*ITAG) Solyc09g072810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61007613-61011641 transcript_region:SL2.40ch09:61007613..61011641+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00042712g0006.1 protein AED:0.38 eAED:0.38 QI:298|0|0.5|0.5|0|0|2|0|56 NbS00040133g0004.1 protein AED:0.19 eAED:0.19 QI:134|0.6|0.54|1|0.7|0.72|11|0|288; (*GB) gi|40457326|gb|AAR86718.1| (e_value=1e-147) glutamine synthetase GS56 [Nicotiana attenuata];; (*SWP) sp|P51119|GLNA2_VITVI (e_value=1e-138) Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1;; (*TAIR) AT5G37600.1 (e_value=1e-137) | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356;; (*ITAG) Solyc04g014510.2.1 (e_value=4e-146) genomic_reference:SL2.40ch04 gene_region:4779960-4784217 transcript_region:SL2.40ch04:4779960..4784217+ go_terms:GO:0004356 functional_description:"Glutamine synthetase (AHRD V1 ***- Q5QJ64_9SOLA); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0004356 NbS00009649g0003.1 protein AED:0.21 eAED:0.21 QI:190|0.75|0.4|1|1|1|5|0|260; (*GB) gi|225450599|ref|XP_002277956.1| (e_value=2e-95) PREDICTED: lon protease homolog, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P93648|LONM_MAIZE (e_value=6e-88) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=2e-79) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024300.1.1 (e_value=7e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13235261-13240790 transcript_region:SL2.40ch10:13235261..13240790+ go_terms:GO:0006508 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00009649g0009.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.5|1|1|4|0|202; (*ITAG) Solyc12g044970.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009649g0014.1 protein AED:0.69 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|145; (*ITAG) Solyc01g094420.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00009649g0013.1 protein AED:0.34 eAED:0.49 QI:0|0|0|1|0|0|2|0|133; (*ITAG) Solyc01g094420.2.1 (e_value=3e-19) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00024270g0005.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|0|2|173|216; (*GB) gi|224056885|ref|XP_002299072.1| (e_value=3e-98) predicted protein [Populus trichocarpa];; (*TAIR) AT5G56120.1 (e_value=7e-84) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:22721483-22722193 FORWARD LENGTH=236;; (*ITAG) Solyc07g066040.1.1 (e_value=3e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64812287-64812961 transcript_region:SL2.40ch07:64812287..64812961+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024270g0004.1 protein AED:0.27 eAED:0.30 QI:195|0.75|0.76|1|0.66|0.61|13|295|398; (*GB) gi|225462041|ref|XP_002274754.1| (e_value=7e-171) PREDICTED: THO complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q96J01|THOC3_HUMAN (e_value=4e-88) THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1;; (*TAIR) AT5G56130.1 (e_value=4e-164) | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like superfamily protein | chr5:22722755-22725065 REVERSE LENGTH=315;; (*ITAG) Solyc07g066060.2.1 (e_value=4e-175) genomic_reference:SL2.40ch07 gene_region:64813613-64819322 transcript_region:SL2.40ch07:64813613..64819322- go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00042940g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|255572965|ref|XP_002527413.1| (e_value=4e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55160.2 (e_value=8e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:20578804-20579803 FORWARD LENGTH=137;; (*ITAG) Solyc03g121520.2.1 (e_value=3e-42) genomic_reference:SL2.40ch03 gene_region:63658315-63662290 transcript_region:SL2.40ch03:63658315..63662290- functional_description:"Unknown Protein (AHRD V1)"; NbS00055071g0005.1 protein AED:0.36 eAED:0.36 QI:201|0.85|0.87|1|0.71|0.87|8|522|235; (*GB) gi|296082380|emb|CBI21385.3| (e_value=5e-82) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23193|CBSX1_ARATH (e_value=1e-78) CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2;; (*TAIR) AT4G36910.1 (e_value=8e-80) | Symbols: LEJ2, CDCP2 | Cystathionine beta-synthase (CBS) family protein | chr4:17391016-17393218 REVERSE LENGTH=236;; (*ITAG) Solyc02g093140.2.1 (e_value=8e-112) genomic_reference:SL2.40ch02 gene_region:48634790-48640565 transcript_region:SL2.40ch02:48634790..48640565- functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00009355g0023.1 protein AED:0.09 eAED:0.09 QI:247|0.83|0.71|1|0.5|0.42|7|40|233; (*GB) gi|225469300|ref|XP_002269258.1| (e_value=2e-83) PREDICTED: nuclease S1 [Vitis vinifera];; (*SWP) sp|F4JJL0|ENDO4_ARATH (e_value=8e-79) Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1;; (*TAIR) AT4G21585.1 (e_value=6e-80) | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-11479953 FORWARD LENGTH=299;; (*ITAG) Solyc02g078920.2.1 (e_value=2e-110) genomic_reference:SL2.40ch02 gene_region:38118699-38128337 transcript_region:SL2.40ch02:38118699..38128337- go_terms:GO:0000014,GO:0043765 functional_description:"SP I mismatch endonuclease (AHRD V1 **** A0MSM3_SPIOL); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00009355g0030.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.5|0.66|3|0|332; (*GB) gi|296080969|emb|CBI18601.3| (e_value=5e-150) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G54370.1 (e_value=6e-124) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:22075334-22076567 FORWARD LENGTH=337;; (*ITAG) Solyc02g078930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38128755-38129867 transcript_region:SL2.40ch02:38128755..38129867- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 ***- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00009355g0002.1 protein AED:0.18 eAED:0.19 QI:422|1|0.5|1|0|0|2|0|359; (*GB) gi|224126133|ref|XP_002319763.1| (e_value=1e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|P37545|YABD_BACSU (e_value=2e-24) Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1;; (*TAIR) AT5G17570.1 (e_value=5e-145) | Symbols: | TatD related DNase | chr5:5792948-5794580 FORWARD LENGTH=325;; (*ITAG) Solyc02g078980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38167769-38169000 transcript_region:SL2.40ch02:38167769..38169000- go_terms:GO:0005515,GO:0008296 functional_description:"Deoxyribonuclease TatD family (AHRD V1 ***- Q3DD21_STRAG); contains Interpro domain(s) IPR012278 Deoxyribonuclease, TatD Mg-dependent "; GO:0005515,GO:0008296 NbS00009355g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|585; (*GB) gi|307135979|gb|ADN33838.1| (e_value=0.0) pre-mRNA splicing factor [Cucumis melo subsp. melo];; (*SWP) sp|Q9DC48|PRP17_MOUSE (e_value=2e-179) Pre-mRNA-processing factor 17 OS=Mus musculus GN=Cdc40 PE=1 SV=1;; (*TAIR) AT1G10580.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3491560-3493665 REVERSE LENGTH=573;; (*ITAG) Solyc02g078970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38153830-38158196 transcript_region:SL2.40ch02:38153830..38158196- go_terms:GO:0003676 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (AHRD V1 *--* GBB1_DANRE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003676 NbS00009355g0028.1 protein AED:0.22 eAED:0.28 QI:0|0.5|0.33|1|0.57|0.53|15|0|533; (*GB) gi|224116208|ref|XP_002317239.1| (e_value=8e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10NX8|BGAL6_ORYSJ (e_value=2e-94) Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2;; (*TAIR) AT2G28470.1 (e_value=4e-88) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173164 REVERSE LENGTH=852;; (*ITAG) Solyc02g078950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38135936-38141941 transcript_region:SL2.40ch02:38135936..38141941- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9HYZ2_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00009355g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|300|413; (*GB) gi|255560836|ref|XP_002521431.1| (e_value=5e-63) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G61260.1 (e_value=6e-37) | Symbols: | Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344;; (*ITAG) Solyc02g079010.2.1 (e_value=9e-93) genomic_reference:SL2.40ch02 gene_region:38213825-38215181 transcript_region:SL2.40ch02:38213825..38215181+ functional_description:"Cotton fiber expressed protein 1 (AHRD V1 ***- O81373_GOSHI); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00009355g0026.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|433; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=0.0) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*SWP) sp|P52409|E13B_WHEAT (e_value=4e-125) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT3G55430.1 (e_value=4e-155) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449;; (*ITAG) Solyc07g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:261349-264657 transcript_region:SL2.40ch07:261349..264657- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00009355g0035.1 protein AED:0.18 eAED:0.18 QI:175|1|1|1|0.6|0.66|6|72|325; (*GB) gi|76160992|gb|ABA40459.1| (e_value=0.0) NADPH quinone oxidoreductase-like protein [Solanum tuberosum];; (*SWP) sp|Q53FA7|QORX_HUMAN (e_value=2e-84) Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2;; (*TAIR) AT4G21580.1 (e_value=2e-180) | Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr4:11475822-11477514 FORWARD LENGTH=325;; (*ITAG) Solyc02g078940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38131278-38135602 transcript_region:SL2.40ch02:38131278..38135602+ go_terms:GO:0070402 functional_description:"Zinc-binding dehydrogenase superfamily (Quinone oxidoreductase NADPH dependent) (AHRD V1 **-* Q1LPW6_RALME); contains Interpro domain(s) IPR014189 Quinone oxidoreductase putative, PIG3 "; GO:0070402 NbS00009355g0004.1 protein AED:0.29 eAED:0.37 QI:0|0|0.33|1|1|1|3|0|195; (*GB) gi|255560832|ref|XP_002521429.1| (e_value=2e-86) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54WM0|T1843_DICDI (e_value=6e-20) Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1;; (*TAIR) AT4G21570.1 (e_value=4e-76) | Symbols: | Protein of unknown function (DUF300) | chr4:11471126-11472269 REVERSE LENGTH=294;; (*ITAG) Solyc02g078960.2.1 (e_value=2e-98) genomic_reference:SL2.40ch02 gene_region:38148904-38153001 transcript_region:SL2.40ch02:38148904..38153001+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A9UM61_XENTR); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00009355g0029.1 protein AED:0.55 eAED:0.66 QI:0|0|0|0.75|0|0|4|0|97; (*GB) gi|255560830|ref|XP_002521428.1| (e_value=9e-36) beta-galactosidase, putative [Ricinus communis];; (*SWP) sp|Q9SCV4|BGAL8_ARATH (e_value=2e-27) Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2;; (*TAIR) AT2G28470.1 (e_value=1e-28) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173164 REVERSE LENGTH=852;; (*ITAG) Solyc02g078950.2.1 (e_value=9e-41) genomic_reference:SL2.40ch02 gene_region:38135936-38141941 transcript_region:SL2.40ch02:38135936..38141941- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9HYZ2_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00004099g0001.1 protein AED:0.31 eAED:0.32 QI:369|1|0.66|1|0|0|3|0|415; (*GB) gi|225439176|ref|XP_002274655.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258667 [Vitis vinifera];; (*TAIR) AT3G09180.1 (e_value=4e-160) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402;; (*ITAG) Solyc01g087230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73917170-73918585 transcript_region:SL2.40ch01:73917170..73918585+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050626g0003.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|156 NbS00050626g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|119 NbS00004684g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.8|1|1|1|5|550|676; (*GB) gi|225458916|ref|XP_002285486.1| (e_value=0.0) PREDICTED: probable xyloglucan glycosyltransferase 12 [Vitis vinifera];; (*SWP) sp|Q9ZQB9|CSLCC_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1;; (*TAIR) AT4G07960.1 (e_value=0.0) | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699;; (*ITAG) Solyc12g088240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62131260-62133954 transcript_region:SL2.40ch12:62131260..62133954+ functional_description:"Cellulose synthase-like C1-1 glycosyltransferase family 2 protein (AHRD V1 ***- D8RV47_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; NbS00004684g0009.1 protein AED:0.79 eAED:0.89 QI:0|0|0|0.66|0.5|0.66|3|0|165 NbS00003214g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.8|1|1|1|10|0|535; (*GB) gi|225434229|ref|XP_002275950.1| (e_value=1e-127) PREDICTED: uncharacterized protein LOC100259405 isoform 1 [Vitis vinifera];; (*SWP) sp|Q28G87|LARP7_XENTR (e_value=2e-16) La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1;; (*TAIR) AT2G43970.1 (e_value=3e-96) | Symbols: | RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545;; (*ITAG) Solyc12g096640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63807585-63813301 transcript_region:SL2.40ch12:63807585..63813301- go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"La-related protein 7 (AHRD V1 *--- LARP7_XENTR); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0030529,GO:0000166 NbS00047262g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|1|0.25|0.2|5|0|660; (*GB) gi|255563429|ref|XP_002522717.1| (e_value=2e-160) Protein phosphatase 1 regulatory subunit, putative [Ricinus communis];; (*TAIR) AT4G03260.2 (e_value=5e-122) | Symbols: | Outer arm dynein light chain 1 protein | chr4:1429092-1431431 FORWARD LENGTH=677;; (*ITAG) Solyc07g053180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58964708-58968397 transcript_region:SL2.40ch07:58964708..58968397+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00047262g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|135; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=3e-78) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|P29620|CDKD1_ORYSJ (e_value=3e-73) Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1;; (*TAIR) AT1G66750.1 (e_value=1e-73) | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4 | CDK-activating kinase 4 | chr1:24894775-24897015 FORWARD LENGTH=348;; (*ITAG) Solyc08g081280.2.1 (e_value=4e-80) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007926g0020.1 protein AED:0.12 eAED:0.13 QI:0|1|0.8|1|1|1|5|0|168; (*GB) gi|350536239|ref|NP_001234492.1| (e_value=4e-113) nuclear matrix protein 1 [Solanum lycopersicum];; (*TAIR) AT5G17620.1 (e_value=4e-102) | Symbols: | CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805934-5808455 REVERSE LENGTH=329;; (*ITAG) Solyc01g081380.2.1 (e_value=8e-116) genomic_reference:SL2.40ch01 gene_region:73103761-73110188 transcript_region:SL2.40ch01:73103761..73110188- functional_description:"Nuclear matrix protein 1 (AHRD V1 ***- Q93XE2_SOLLC); contains Interpro domain(s) IPR010604 Plant nuclear matrix 1 "; NbS00007926g0019.1 protein AED:0.40 eAED:0.46 QI:176|0|0.33|0.66|1|1|3|0|248; (*GB) gi|255565988|ref|XP_002523982.1| (e_value=6e-54) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G19450.1 (e_value=2e-50) | Symbols: | Major facilitator superfamily protein | chr4:10606538-10609218 FORWARD LENGTH=572;; (*ITAG) Solyc01g081410.2.1 (e_value=7e-70) genomic_reference:SL2.40ch01 gene_region:73122465-73125023 transcript_region:SL2.40ch01:73122465..73125023- go_terms:GO:0009055 functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; GO:0009055 NbS00007926g0007.1 protein AED:0.09 eAED:0.14 QI:0|1|0.5|1|0|0|2|106|118; (*GB) gi|113205246|gb|AAT39963.2| (e_value=3e-13) Polyprotein, putative [Solanum demissum]; NbS00007926g0005.1 protein AED:0.29 eAED:0.30 QI:0|0|0.5|1|0|0.5|2|61|423; (*GB) gi|359489082|ref|XP_002264736.2| (e_value=0.0) PREDICTED: xylulose 5-phosphate/phosphate translocator, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LF61|XPT_ARATH (e_value=0.0) Xylulose 5-phosphate/phosphate translocator, chloroplastic OS=Arabidopsis thaliana GN=XPT PE=2 SV=1;; (*TAIR) AT5G17630.1 (e_value=0.0) | Symbols: | Nucleotide/sugar transporter family protein | chr5:5809475-5810728 FORWARD LENGTH=417;; (*ITAG) Solyc01g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73112100-73113905 transcript_region:SL2.40ch01:73112100..73113905+ go_terms:GO:0008524 functional_description:"Glucose 6 phosphate/phosphate translocator-like protein (AHRD V1 **** Q9LF61_ARATH); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00007926g0002.1 protein AED:0.30 eAED:0.30 QI:65|1|0.66|1|0|0.33|3|0|157; (*GB) gi|225436198|ref|XP_002267731.1| (e_value=4e-29) PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera];; (*SWP) sp|Q7XLP4|Y4869_ORYSJ (e_value=4e-21) B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3;; (*ITAG) Solyc01g081400.2.1 (e_value=5e-73) genomic_reference:SL2.40ch01 gene_region:73119945-73121166 transcript_region:SL2.40ch01:73119945..73121166+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os04g0386900 (AHRD V1 ***- Y4869_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00007926g0023.1 protein AED:0.32 eAED:0.43 QI:0|0|0|1|0|0|3|0|313; (*GB) gi|225436200|ref|XP_002271112.1| (e_value=6e-66) PREDICTED: uncharacterized protein LOC100262611 [Vitis vinifera];; (*TAIR) AT5G45275.1 (e_value=2e-61) | Symbols: | Major facilitator superfamily protein | chr5:18334476-18337240 REVERSE LENGTH=570;; (*ITAG) Solyc08g074960.2.1 (e_value=2e-62) genomic_reference:SL2.40ch08 gene_region:56264924-56268960 transcript_region:SL2.40ch08:56264924..56268960+ functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00007926g0027.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|3|0|304; (*GB) gi|224130878|ref|XP_002320947.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=4e-38) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT1G64830.1 (e_value=8e-51) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:24091271-24092566 REVERSE LENGTH=431;; (*ITAG) Solyc01g081370.2.1 (e_value=3e-90) genomic_reference:SL2.40ch01 gene_region:73100345-73101704 transcript_region:SL2.40ch01:73100345..73101704- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00041850g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|297733904|emb|CBI15151.3| (e_value=8e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G35340.1 (e_value=4e-26) | Symbols: MEE29 | helicase domain-containing protein | chr2:14872728-14879615 FORWARD LENGTH=1044;; (*ITAG) Solyc03g115400.1.1 (e_value=3e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59177143-59177739 transcript_region:SL2.40ch03:59177143..59177739- functional_description:"Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 (AHRD V1 ***- CDC28_SCHPO)"; NbS00008268g0011.1 protein AED:0.05 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|484; (*GB) gi|224114073|ref|XP_002316659.1| (e_value=7e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|O64787|FBD4_ARATH (e_value=2e-20) Putative FBD-associated F-box protein At1g61330 OS=Arabidopsis thaliana GN=At1g61330 PE=4 SV=1;; (*TAIR) AT1G61330.1 (e_value=2e-21) | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr1:22622975-22624527 FORWARD LENGTH=447;; (*ITAG) Solyc02g079120.1.1 (e_value=1e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38309723-38311291 transcript_region:SL2.40ch02:38309723..38311291+ functional_description:"F-box family protein (AHRD V1 *-*- D7LD53_ARALY)"; NbS00008268g0010.1 protein AED:0.31 eAED:0.31 QI:0|1|0.92|1|0.76|0.85|14|245|429; (*GB) gi|359495466|ref|XP_002277046.2| (e_value=0.0) PREDICTED: telomerase Cajal body protein 1-like [Vitis vinifera];; (*SWP) sp|Q60525|WAP53_MESAU (e_value=4e-91) Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1;; (*TAIR) AT4G21520.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:11447514-11450377 REVERSE LENGTH=425;; (*ITAG) Solyc02g079110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38300297-38306896 transcript_region:SL2.40ch02:38300297..38306896+ go_terms:GO:0034512 functional_description:"WD repeat-containing protein (AHRD V1 **-- C0S8X8_PARBP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0034512 NbS00010088g0016.1 protein AED:0.02 eAED:0.02 QI:153|1|1|1|1|1|2|249|542; (*GB) gi|225427985|ref|XP_002277695.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260696 [Vitis vinifera];; (*TAIR) AT4G34950.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:16642544-16644759 REVERSE LENGTH=567;; (*ITAG) Solyc01g111350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89382547-89387017 transcript_region:SL2.40ch01:89382547..89387017- functional_description:"Nodulin family protein (AHRD V1 ***- D7MDH3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00010088g0004.1 protein AED:0.15 eAED:0.15 QI:617|0.66|0.85|1|0|0.14|7|315|170; (*GB) gi|225427983|ref|XP_002277675.1| (e_value=2e-73) PREDICTED: probable endo-1,4-beta-xylanase C-like [Vitis vinifera];; (*TAIR) AT4G38650.1 (e_value=1e-64) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:18063377-18065769 FORWARD LENGTH=562;; (*ITAG) Solyc01g111340.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:89378382-89381159 transcript_region:SL2.40ch01:89378382..89381159- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00010088g0019.1 protein AED:0.02 eAED:0.02 QI:435|1|1|1|1|0.66|3|227|361; (*GB) gi|225427981|ref|XP_002277548.1| (e_value=2e-119) PREDICTED: pathogenesis-related protein 5 [Vitis vinifera];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=1e-72) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G38660.2 (e_value=2e-108) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18066448-18067792 REVERSE LENGTH=323;; (*ITAG) Solyc01g111330.2.1 (e_value=4e-149) genomic_reference:SL2.40ch01 gene_region:89376094-89377968 transcript_region:SL2.40ch01:89376094..89377968+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9STX6_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00010088g0018.1 protein AED:0.47 eAED:0.47 QI:0|0.2|0.16|0.5|1|1|6|213|301 NbS00010088g0021.1 protein AED:0.20 eAED:0.26 QI:0|0|0|1|0|0|2|0|114; (*GB) gi|54261828|gb|AAV31178.1| (e_value=1e-13) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc10g055510.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:52366758-52368603 transcript_region:SL2.40ch10:52366758..52368603- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SKM2_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00033246g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|454; (*GB) gi|357528929|gb|AET80686.1| (e_value=0.0) spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=7e-46) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=2e-57) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g005430.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:260587-261960 transcript_region:SL2.40ch12:260587..261960+ go_terms:GO:0016747 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X8_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00019389g0006.1 protein AED:0.07 eAED:0.07 QI:211|0.85|0.87|1|0.85|0.87|8|0|486; (*GB) gi|148469859|gb|ABQ65859.1| (e_value=0.0) serine carboxypeptidase III [Nicotiana tabacum];; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=0.0) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2;; (*TAIR) AT3G45010.1 (e_value=0.0) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc06g017860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:10756897-10760347 transcript_region:SL2.40ch06:10756897..10760347- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q2Z1Y2_PRUMU); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00019389g0003.1 protein AED:0.55 eAED:0.58 QI:0|0|0.25|0.5|1|1|4|0|198 NbS00039756g0010.1 protein AED:0.25 eAED:0.27 QI:0|0.6|0.66|1|0.8|0.5|6|0|397; (*GB) gi|359477228|ref|XP_002271465.2| (e_value=7e-153) PREDICTED: uncharacterized protein LOC100258588 [Vitis vinifera];; (*TAIR) AT4G16100.1 (e_value=3e-105) | Symbols: | Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394;; (*ITAG) Solyc01g065560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64286841-64290681 transcript_region:SL2.40ch01:64286841..64290681- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00039756g0009.1 protein AED:0.37 eAED:0.37 QI:199|1|0.8|1|0.75|1|5|405|216; (*GB) gi|224110250|ref|XP_002315460.1| (e_value=5e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VXU6|DI194_ARATH (e_value=3e-59) Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1;; (*TAIR) AT3G06760.1 (e_value=2e-60) | Symbols: | Drought-responsive family protein | chr3:2132971-2134355 FORWARD LENGTH=224;; (*ITAG) Solyc01g065550.2.1 (e_value=4e-110) genomic_reference:SL2.40ch01 gene_region:64281108-64286492 transcript_region:SL2.40ch01:64281108..64286492+ go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 4 (AHRD V1 ***- DI194_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00003899g0007.1 protein AED:0.15 eAED:0.15 QI:154|1|1|1|0.75|0.8|5|112|160; (*GB) gi|359478080|ref|XP_003632066.1| (e_value=7e-84) PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera];; (*SWP) sp|Q9C5H6|CSTR3_ARATH (e_value=2e-81) CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1;; (*TAIR) AT3G59360.2 (e_value=2e-82) | Symbols: UTR6, ATUTR6 | UDP-galactose transporter 6 | chr3:21935826-21939642 REVERSE LENGTH=405;; (*ITAG) Solyc11g008610.1.1 (e_value=2e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2796072-2804558 transcript_region:SL2.40ch11:2796072..2804558- go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 **** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00003899g0006.1 protein AED:0.18 eAED:0.18 QI:297|1|1|1|1|1|11|262|362; (*GB) gi|356531866|ref|XP_003534497.1| (e_value=0.0) PREDICTED: phosphoglycolate phosphatase-like [Glycine max];; (*SWP) sp|Q2T9S4|PGP_BOVIN (e_value=6e-54) Phosphoglycolate phosphatase OS=Bos taurus GN=PGP PE=2 SV=1;; (*TAIR) AT5G36700.4 (e_value=2e-175) | Symbols: PGLP1 | 2-phosphoglycolate phosphatase 1 | chr5:14421929-14424430 REVERSE LENGTH=362;; (*ITAG) Solyc11g008620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2807207-2813709 transcript_region:SL2.40ch11:2807207..2813709- go_terms:GO:0008152 functional_description:"Phosphoglycolate phosphatase (AHRD V1 **-- C1FHY2_9CHLO); contains Interpro domain(s) IPR006349 2-phosphoglycolate phosphatase, eukaryotic "; GO:0008152 NbS00013485g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|146; (*GB) gi|255537801|ref|XP_002509967.1| (e_value=6e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G23890.1 (e_value=1e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). | chr4:12420593-12421345 REVERSE LENGTH=250;; (*ITAG) Solyc08g082400.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62383099-62383851 transcript_region:SL2.40ch08:62383099..62383851- functional_description:"Genome sequencing data contig C313 (AHRD V1 *-*- A8YHF7_MICAE)"; NbS00019713g0013.1 protein AED:0.06 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|208; (*GB) gi|357514445|ref|XP_003627511.1| (e_value=8e-31) Homeobox-leucine zipper protein ATHB-7 [Medicago truncatula];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=9e-29) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.2 (e_value=6e-30) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=256;; (*ITAG) Solyc08g083130.2.1 (e_value=7e-82) genomic_reference:SL2.40ch08 gene_region:62843229-62844188 transcript_region:SL2.40ch08:62843229..62844188- go_terms:GO:0043565 functional_description:"Homeobox leucine zipper protein (AHRD V1 *-*- B8YIB0_MIRJA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00019713g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|302028371|gb|ADK91082.1| (e_value=4e-120) LMYC2 [Hevea brasiliensis];; (*SWP) sp|O23090|BH014_ARATH (e_value=7e-64) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=6e-65) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc08g083170.1.1 (e_value=4e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62878232-62879395 transcript_region:SL2.40ch08:62878232..62879395+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00019713g0008.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|0.5|2|0|150 NbS00019713g0009.1 protein AED:0.64 eAED:0.78 QI:0|1|0|1|1|1|2|0|120 NbS00011078g0001.1 protein AED:0.19 eAED:0.88 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|388492778|gb|AFK34455.1| (e_value=3e-30) unknown [Medicago truncatula];; (*SWP) sp|Q9SAC0|ZCIS_ARATH (e_value=1e-25) 15-cis-zeta-carotene isomerase, chloroplastic OS=Arabidopsis thaliana GN=Z-ISO PE=1 SV=1;; (*TAIR) AT1G10830.2 (e_value=2e-27) | Symbols: Z-ISO, Z-ISO1.2 | 15-cis-zeta-carotene isomerase | chr1:3606411-3607449 REVERSE LENGTH=285;; (*ITAG) Solyc12g098710.1.1 (e_value=7e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64466750-64470757 transcript_region:SL2.40ch12:64466750..64470757+ functional_description:"15-cis-zeta-carotene isomerase"; NbC24126686g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|211906464|gb|ACJ11725.1| (e_value=1e-65) dimethylmenaquinone methyltransferase [Gossypium hirsutum];; (*SWP) sp|Q9FFE0|RRAA2_ARATH (e_value=2e-62) Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1;; (*TAIR) AT5G16450.2 (e_value=1e-63) | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:5374357-5375342 FORWARD LENGTH=166;; (*ITAG) Solyc04g008280.2.1 (e_value=8e-70) genomic_reference:SL2.40ch04 gene_region:1954623-1957620 transcript_region:SL2.40ch04:1954623..1957620+ go_terms:GO:0008757 functional_description:"Regulator of ribonuclease activity A (AHRD V1 ***- B6T0A4_MAIZE); contains Interpro domain(s) IPR010203 Ribonuclease E inhibitor RraA "; GO:0008757 NbS00018695g0003.1 protein AED:0.37 eAED:0.37 QI:0|1|0.33|1|1|1|3|0|329; (*GB) gi|225426781|ref|XP_002282844.1| (e_value=3e-143) PREDICTED: F-box protein PP2-A12 [Vitis vinifera];; (*SWP) sp|Q9LN77|P2A12_ARATH (e_value=2e-125) F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1;; (*TAIR) AT1G12710.1 (e_value=1e-126) | Symbols: AtPP2-A12, PP2-A12 | phloem protein 2-A12 | chr1:4326980-4328324 REVERSE LENGTH=291;; (*ITAG) Solyc12g056410.1.1 (e_value=3e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47699541-47701524 transcript_region:SL2.40ch12:47699541..47701524+ functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00049064g0001.1 protein AED:0.11 eAED:0.11 QI:160|0.8|0.81|1|1|1|11|345|305; (*GB) gi|51949802|gb|AAU14833.1| (e_value=0.0) adenosine kinase isoform 2S [Nicotiana tabacum];; (*SWP) sp|Q9LZG0|ADK2_ARATH (e_value=0.0) Adenosine kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=1 SV=1;; (*TAIR) AT5G03300.1 (e_value=0.0) | Symbols: ADK2 | adenosine kinase 2 | chr5:796573-798997 FORWARD LENGTH=345;; (*ITAG) Solyc10g086190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64429085-64433301 transcript_region:SL2.40ch10:64429085..64433301+ go_terms:GO:0006166 functional_description:"Adenosine kinase (AHRD V1 ***- D2D2Z6_GOSHI); contains Interpro domain(s) IPR001805 Adenosine kinase "; GO:0006166 NbS00017157g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|204; (*GB) gi|225458509|ref|XP_002284218.1| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100255850 [Vitis vinifera];; (*TAIR) AT5G06430.1 (e_value=2e-64) | Symbols: | Thioredoxin superfamily protein | chr5:1963580-1964251 REVERSE LENGTH=194;; (*ITAG) Solyc10g006520.2.1 (e_value=4e-114) genomic_reference:SL2.40ch10 gene_region:1092969-1095461 transcript_region:SL2.40ch10:1092969..1095461- functional_description:"Thioredoxin-like protein (AHRD V1 *-*- Q8YZA9_ANASP); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00050396g0007.1 protein AED:0.24 eAED:0.24 QI:365|0.8|0.63|1|0.5|0.63|11|0|453; (*GB) gi|304304318|gb|ADM21465.1| (e_value=6e-114) alpha-dioxygenase 2 [Nicotiana attenuata];; (*TAIR) AT1G73680.1 (e_value=4e-80) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631;; (*ITAG) Solyc03g119060.2.1 (e_value=5e-111) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00013559g0006.1 protein AED:0.24 eAED:0.24 QI:407|0.66|0.75|1|0.33|0.5|4|183|65; (*ITAG) Solyc03g123640.2.1 (e_value=3e-17) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00006412g0010.1 protein AED:0.03 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|553; (*GB) gi|224130624|ref|XP_002320887.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O48927|C78A3_SOYBN (e_value=0.0) Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1;; (*TAIR) AT2G46660.1 (e_value=0.0) | Symbols: CYP78A6 | cytochrome P450, family 78, subfamily A, polypeptide 6 | chr2:19153602-19155417 REVERSE LENGTH=530;; (*ITAG) Solyc01g096280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79122254-79124436 transcript_region:SL2.40ch01:79122254..79124436- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00016853g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|4|0|282; (*GB) gi|29427816|sp|Q8HSW1.1|KADC_SOLTU (e_value=1e-170) RecName: Full=Adenylate kinase, chloroplastic; Short=AK; AltName: Full=ATP-AMP transphosphorylase; Flags: Precursor;; (*SWP) sp|Q8HSW1|KADC_SOLTU (e_value=3e-172) Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1;; (*TAIR) AT2G37250.1 (e_value=4e-139) | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:15641991-15643318 FORWARD LENGTH=284;; (*ITAG) Solyc09g007180.2.1 (e_value=1e-176) genomic_reference:SL2.40ch09 gene_region:801969-804985 transcript_region:SL2.40ch09:801969..804985- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00020641g0003.1 protein AED:0.00 eAED:0.00 QI:143|1|1|1|1|1|3|63|297; (*GB) gi|356541250|ref|XP_003539092.1| (e_value=4e-63) PREDICTED: uncharacterized protein LOC100803283 [Glycine max];; (*TAIR) AT5G59790.1 (e_value=4e-60) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc04g010330.2.1 (e_value=3e-115) genomic_reference:SL2.40ch04 gene_region:3666239-3667699 transcript_region:SL2.40ch04:3666239..3667699+ functional_description:"Auxin-regulated protein (AHRD V1 *-*- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00001736g0001.1 protein AED:0.46 eAED:0.90 QI:79|0|0|0.5|0|0|2|0|56 NbS00028170g0001.1 protein AED:0.08 eAED:0.08 QI:118|0.71|0.75|1|0.85|0.75|8|386|442; (*GB) gi|12643757|sp|Q40460.1|RCA1_TOBAC (e_value=0.0) RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1; Flags: Precursor;; (*SWP) sp|Q40460|RCA1_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT2G39730.3 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16571174-16573345 REVERSE LENGTH=441;; (*ITAG) Solyc09g011080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4413327-4416467 transcript_region:SL2.40ch09:4413327..4416467- go_terms:GO:0046863 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0046863 NbS00028170g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|147864837|emb|CAN79375.1| (e_value=2e-16) hypothetical protein VITISV_014611 [Vitis vinifera];; (*TAIR) AT1G17970.1 (e_value=3e-14) | Symbols: | RING/U-box superfamily protein | chr1:6185032-6187202 FORWARD LENGTH=368;; (*ITAG) Solyc12g005510.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:297079-297660 transcript_region:SL2.40ch12:297079..297660+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019095g0003.1 protein AED:0.17 eAED:0.18 QI:0|0.62|0.44|1|0.87|0.88|9|0|652; (*GB) gi|297837505|ref|XP_002886634.1| (e_value=8e-145) potassium transporter family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O80739|POT12_ARATH (e_value=8e-146) Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2;; (*TAIR) AT1G60160.1 (e_value=6e-147) | Symbols: | Potassium transporter family protein | chr1:22188330-22191395 REVERSE LENGTH=827;; (*ITAG) Solyc05g005720.2.1 (e_value=1e-171) genomic_reference:SL2.40ch05 gene_region:532284-536640 transcript_region:SL2.40ch05:532284..536640+ go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00041082g0004.1 protein AED:0.10 eAED:0.10 QI:99|0.8|0.66|1|0.8|0.66|6|161|407; (*GB) gi|225424649|ref|XP_002285512.1| (e_value=0.0) PREDICTED: GDSL esterase/lipase At3g26430 [Vitis vinifera];; (*SWP) sp|Q9LIN2|GDL53_ARATH (e_value=1e-172) GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1;; (*TAIR) AT3G26430.1 (e_value=8e-174) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:9674419-9675889 FORWARD LENGTH=380;; (*ITAG) Solyc05g013690.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6985649-6988693 transcript_region:SL2.40ch05:6985649..6988693- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At3g26430 (AHRD V1 ***- GDL53_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00044370g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|120; (*GB) gi|356570798|ref|XP_003553571.1| (e_value=3e-36) PREDICTED: aspartic proteinase-like protein 2-like [Glycine max];; (*TAIR) AT2G36670.1 (e_value=2e-32) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=512;; (*ITAG) Solyc09g008600.2.1 (e_value=3e-39) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00013758g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|366; (*ITAG) Solyc05g012570.2.1 (e_value=8e-16) genomic_reference:SL2.40ch05 gene_region:5796042-5797877 transcript_region:SL2.40ch05:5796042..5797877- functional_description:"Unknown Protein (AHRD V1)"; NbS00023985g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=1e-132) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-115) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34138.1 (e_value=1e-48) | Symbols: UGT73B1 | UDP-glucosyl transferase 73B1 | chr4:16348267-16349858 REVERSE LENGTH=488;; (*ITAG) Solyc05g012670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5875384-5876718 transcript_region:SL2.40ch05:5875384..5876718+ go_terms:GO:0047209 functional_description:"Glucosyltransferase-3 (AHRD V1 **** Q8S9A6_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00028584g0008.1 protein AED:0.04 eAED:0.04 QI:10|1|1|1|0.91|0.92|13|582|688; (*GB) gi|359476651|ref|XP_002273723.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264247 [Vitis vinifera];; (*TAIR) AT3G51050.1 (e_value=0.0) | Symbols: | FG-GAP repeat-containing protein | chr3:18954023-18957698 FORWARD LENGTH=698;; (*ITAG) Solyc02g084690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42366670-42374867 transcript_region:SL2.40ch02:42366670..42374867- functional_description:"FG-GAP repeat-containing protein (AHRD V1 ***- D7LTM4_ARALY); contains Interpro domain(s) IPR013517 FG-GAP "; NbS00028584g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|206; (*GB) gi|5726575|gb|AAD48472.1|AF170089_1 (e_value=1e-70) histone H1C [Nicotiana tabacum];; (*SWP) sp|P40267|H1_SOLPN (e_value=7e-54) Histone H1 OS=Solanum pennellii PE=2 SV=1;; (*TAIR) AT2G18050.1 (e_value=9e-34) | Symbols: HIS1-3 | histone H1-3 | chr2:7846095-7846670 FORWARD LENGTH=167;; (*ITAG) Solyc02g084240.2.1 (e_value=4e-57) genomic_reference:SL2.40ch02 gene_region:41975280-41976442 transcript_region:SL2.40ch02:41975280..41976442+ go_terms:GO:0005634,GO:0000786 functional_description:"H1 histone-like protein (AHRD V1 ***- Q43511_SOLLC); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbS00004721g0001.1 protein AED:0.06 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=5e-57) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=2e-58) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT2G30770.1 (e_value=2e-31) | Symbols: CYP71A13 | cytochrome P450, family 71, subfamily A, polypeptide 13 | chr2:13109909-13112006 REVERSE LENGTH=503;; (*ITAG) Solyc04g083140.1.1 (e_value=2e-58) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00006538g0006.1 protein AED:0.09 eAED:0.09 QI:36|0.75|0.88|0.88|0.75|0.66|9|269|549; (*GB) gi|359481991|ref|XP_002277150.2| (e_value=5e-95) PREDICTED: uncharacterized protein LOC100242486 [Vitis vinifera];; (*SWP) sp|Q16514|TAF12_HUMAN (e_value=4e-29) Transcription initiation factor TFIID subunit 12 OS=Homo sapiens GN=TAF12 PE=1 SV=1;; (*TAIR) AT3G10070.1 (e_value=1e-58) | Symbols: TAF12, TAFII58 | TBP-associated factor 12 | chr3:3104195-3106798 REVERSE LENGTH=539;; (*ITAG) Solyc09g009680.2.1 (e_value=7e-157) genomic_reference:SL2.40ch09 gene_region:3073330-3079860 transcript_region:SL2.40ch09:3073330..3079860+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- C1BLQ3_OSMMO); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00006538g0001.1 protein AED:0.14 eAED:0.14 QI:377|0.75|0.88|1|0.75|0.55|9|336|279; (*GB) gi|359482324|ref|XP_002283153.2| (e_value=2e-142) PREDICTED: uridine nucleosidase 1-like [Vitis vinifera];; (*SWP) sp|Q652Q8|URH2_ORYSJ (e_value=4e-118) Probable uridine nucleosidase 2 OS=Oryza sativa subsp. japonica GN=URH2 PE=2 SV=1;; (*TAIR) AT2G36310.1 (e_value=2e-106) | Symbols: URH1 | uridine-ribohydrolase 1 | chr2:15224692-15226633 REVERSE LENGTH=336;; (*ITAG) Solyc09g009690.2.1 (e_value=7e-163) genomic_reference:SL2.40ch09 gene_region:3081754-3086462 transcript_region:SL2.40ch09:3081754..3086462+ functional_description:"Ribonucleoside hydrolase 1 (AHRD V1 ***- D1RWC6_SEROD); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; NbS00002366g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|148279681|gb|ABQ53935.1| (e_value=0.0) geranylgeranyl pyrophosphate synthase [Nicotiana attenuata];; (*SWP) sp|P80042|GGPPS_CAPAN (e_value=0.0) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1;; (*TAIR) AT4G36810.1 (e_value=3e-156) | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371;; (*ITAG) Solyc04g079960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61870171-61871262 transcript_region:SL2.40ch04:61870171..61871262- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase 2 (AHRD V1 ***- Q1A7S9_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00014983g0003.1 protein AED:0.17 eAED:0.18 QI:0|0.90|0.86|1|0.86|1|23|204|830; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*SWP) sp|P31049|FAMT_PSEPU (e_value=5e-43) Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1;; (*TAIR) AT3G23510.1 (e_value=0.0) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc03g045140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15588568-15596050 transcript_region:SL2.40ch03:15588568..15596050- go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00045643g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|356530027|ref|XP_003533586.1| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100815316 [Glycine max];; (*TAIR) AT5G16520.1 (e_value=3e-45) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=1e-77) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbC23714312g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|224061919|ref|XP_002300664.1| (e_value=6e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6Z690|LDL1_ORYSJ (e_value=2e-32) Lysine-specific histone demethylase 1 homolog 1 OS=Oryza sativa subsp. japonica GN=Os02g0755200 PE=2 SV=1;; (*TAIR) AT3G10390.1 (e_value=3e-33) | Symbols: FLD | Flavin containing amine oxidoreductase family protein | chr3:3229293-3232345 FORWARD LENGTH=884;; (*ITAG) Solyc05g055580.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64300993-64302859 transcript_region:SL2.40ch05:64300993..64302859+ go_terms:GO:0016491 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0016491 NbS00040261g0011.1 protein AED:0.27 eAED:0.27 QI:339|0.8|0.83|1|1|1|6|260|256; (*GB) gi|225459123|ref|XP_002285695.1| (e_value=6e-74) PREDICTED: uncharacterized protein LOC100267834 [Vitis vinifera];; (*TAIR) AT5G49710.3 (e_value=8e-67) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:20195561-20197188 FORWARD LENGTH=235;; (*ITAG) Solyc04g076110.2.1 (e_value=4e-103) genomic_reference:SL2.40ch04 gene_region:58658002-58662339 transcript_region:SL2.40ch04:58658002..58662339- functional_description:"Genomic DNA chromosome 5 TAC clone K2I5 (AHRD V1 **-- Q9LTA1_ARATH)"; NbS00040261g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.81|0.78|0.95|1|1|23|0|1273; (*GB) gi|359492479|ref|XP_003634420.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254008 [Vitis vinifera];; (*TAIR) AT4G24610.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | chr4:12700837-12707899 REVERSE LENGTH=1150;; (*ITAG) Solyc04g076100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58646709-58657416 transcript_region:SL2.40ch04:58646709..58657416+ functional_description:"Genomic DNA chromosome 5 P1 clone MNA5 (AHRD V1 **-- Q9FKP6_ARATH)"; NbS00013940g0004.1 protein AED:0.01 eAED:0.03 QI:214|0|0.5|1|0|0.5|2|4|329; (*GB) gi|224133178|ref|XP_002327979.1| (e_value=3e-124) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59490.2 (e_value=2e-115) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:21984660-21986262 REVERSE LENGTH=293;; (*ITAG) Solyc11g045210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36943235-36951548 transcript_region:SL2.40ch11:36943235..36951548+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013940g0012.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0|2|9|39 NbS00013940g0015.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|1|0.5|4|0|483; (*GB) gi|225441163|ref|XP_002265853.1| (e_value=0.0) PREDICTED: probable pectate lyase 12 [Vitis vinifera];; (*SWP) sp|Q9SCP2|PLY12_ARATH (e_value=0.0) Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2;; (*TAIR) AT3G53190.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:19714171-19717537 FORWARD LENGTH=483;; (*ITAG) Solyc09g008380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1844382-1849775 transcript_region:SL2.40ch09:1844382..1849775+ go_terms:GO:0016829 functional_description:"Pectate lyase-like protein (AHRD V1 **** Q56XU8_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00024116g0018.1 protein AED:0.09 eAED:0.10 QI:0|0.87|0.76|1|0.95|0.96|25|0|1346; (*GB) gi|359478571|ref|XP_002279903.2| (e_value=0.0) PREDICTED: helicase SKI2W-like [Vitis vinifera];; (*SWP) sp|Q15477|SKIV2_HUMAN (e_value=0.0) Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3;; (*TAIR) AT3G46960.1 (e_value=0.0) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17291004-17298067 REVERSE LENGTH=1347;; (*ITAG) Solyc06g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:983484-1006865 transcript_region:SL2.40ch06:983484..1006865+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B3LQ61_YEAS1); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00024116g0016.1 protein AED:0.37 eAED:0.38 QI:0|1|0.87|1|1|0.87|8|38|490; (*GB) gi|147775244|emb|CAN61602.1| (e_value=0.0) hypothetical protein VITISV_024967 [Vitis vinifera];; (*SWP) sp|Q9ZW07|PUM1_ARATH (e_value=0.0) Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=2 SV=1;; (*TAIR) AT2G29200.1 (e_value=0.0) | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-12553185 REVERSE LENGTH=968;; (*ITAG) Solyc06g005670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:735456-743778 transcript_region:SL2.40ch06:735456..743778+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00024116g0017.1 protein AED:0.43 eAED:0.45 QI:0|0.16|0|0.71|0.5|0.42|7|0|504; (*GB) gi|147775244|emb|CAN61602.1| (e_value=1e-71) hypothetical protein VITISV_024967 [Vitis vinifera];; (*SWP) sp|Q9ZW06|PUM2_ARATH (e_value=8e-64) Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1;; (*TAIR) AT2G29190.2 (e_value=6e-65) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972;; (*ITAG) Solyc06g005670.2.1 (e_value=2e-174) genomic_reference:SL2.40ch06 gene_region:735456-743778 transcript_region:SL2.40ch06:735456..743778+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00024116g0020.1 protein AED:0.07 eAED:0.10 QI:61|0.2|0.16|1|0.2|0|6|0|632; (*GB) gi|147769371|emb|CAN72496.1| (e_value=9e-153) hypothetical protein VITISV_010511 [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-80) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=9e-82) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc06g006040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00024116g0014.1 protein AED:0.13 eAED:0.13 QI:448|1|1|1|0.33|0.5|4|151|168; (*GB) gi|255558834|ref|XP_002520440.1| (e_value=9e-69) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G37300.1 (e_value=1e-23) | Symbols: MEE59 | maternal effect embryo arrest 59 | chr4:17554805-17555498 FORWARD LENGTH=173;; (*ITAG) Solyc06g006000.2.1 (e_value=1e-84) genomic_reference:SL2.40ch06 gene_region:1007187-1010255 transcript_region:SL2.40ch06:1007187..1010255- functional_description:"Unknown Protein (AHRD V1)"; NbS00021875g0001.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|2|0|617; (*GB) gi|225466051|ref|XP_002263650.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g25270, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SB36|PP337_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1;; (*TAIR) AT4G25270.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:12937253-12938836 REVERSE LENGTH=527;; (*ITAG) Solyc03g025700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7498208-7499827 transcript_region:SL2.40ch03:7498208..7499827+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00021875g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|0|1|1|0.5|2|0|134; (*GB) gi|359493310|ref|XP_002280208.2| (e_value=3e-52) PREDICTED: uncharacterized protein LOC100244789 [Vitis vinifera];; (*TAIR) AT1G72030.1 (e_value=1e-40) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:27110887-27111825 FORWARD LENGTH=256;; (*ITAG) Solyc03g025710.2.1 (e_value=5e-67) genomic_reference:SL2.40ch03 gene_region:7500031-7502230 transcript_region:SL2.40ch03:7500031..7502230- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase (AHRD V1 ***- B2IU63_NOSP7); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00060083g0004.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|157; (*GB) gi|255580951|ref|XP_002531294.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5N2J3|TATA_SYNP6 (e_value=1e-19) Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1;; (*TAIR) AT5G28750.1 (e_value=1e-32) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00003305g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0|2|0|267; (*GB) gi|225455786|ref|XP_002274364.1| (e_value=7e-67) PREDICTED: uncharacterized protein LOC100250886 [Vitis vinifera];; (*TAIR) AT1G18520.1 (e_value=2e-50) | Symbols: TET11 | tetraspanin11 | chr1:6375051-6376178 FORWARD LENGTH=271;; (*ITAG) Solyc06g069320.2.1 (e_value=4e-130) genomic_reference:SL2.40ch06 gene_region:39465510-39467895 transcript_region:SL2.40ch06:39465510..39467895- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR018499 Tetraspanin "; GO:0016021 NbS00012924g0009.1 protein AED:0.16 eAED:0.16 QI:164|1|0.66|1|0.8|0.66|6|0|591; (*GB) gi|225429414|ref|XP_002275831.1| (e_value=3e-165) PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=1e-47) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT3G53920.1 (e_value=2e-126) | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C | chr3:19961041-19963820 REVERSE LENGTH=571;; (*ITAG) Solyc08g065970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51578807-51584159 transcript_region:SL2.40ch08:51578807..51584159+ go_terms:GO:0003899,GO:0003677 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 **** D7LJA3_ARALY); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0003899,GO:0003677 NbS00015249g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225454763|ref|XP_002274503.1| (e_value=6e-78) PREDICTED: probable calcium-binding protein CML18 [Vitis vinifera];; (*SWP) sp|Q9M8U1|CML18_ARATH (e_value=5e-75) Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1;; (*TAIR) AT3G03000.1 (e_value=4e-76) | Symbols: | EF hand calcium-binding protein family | chr3:677388-677885 FORWARD LENGTH=165;; (*ITAG) Solyc03g097100.1.1 (e_value=4e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:52891513-52892004 transcript_region:SL2.40ch03:52891513..52892004+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6UHC3_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00015249g0016.1 protein AED:0.26 eAED:0.26 QI:111|0.90|0.83|1|1|1|12|339|427; (*GB) gi|225454753|ref|XP_002273880.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264883 [Vitis vinifera];; (*TAIR) AT5G16810.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:5526860-5529878 REVERSE LENGTH=418;; (*ITAG) Solyc03g097130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52909981-52914569 transcript_region:SL2.40ch03:52909981..52914569+ go_terms:GO:0006468 functional_description:"ATP binding protein (AHRD V1 ***- D7M885_ARALY); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00015249g0018.1 protein AED:0.11 eAED:0.11 QI:0|0.77|0.4|1|0.88|0.8|10|0|606; (*GB) gi|356531447|ref|XP_003534289.1| (e_value=0.0) PREDICTED: lysine-specific demethylase 5C-like [Glycine max];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=2e-48) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc03g097090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52885521-52889558 transcript_region:SL2.40ch03:52885521..52889558- functional_description:"Lysine-specific demethylase 5C (AHRD V1 *--- KDM5C_MOUSE); contains Interpro domain(s) IPR003349 Transcription factor jumonji, JmjN "; NbS00015249g0029.1 protein AED:0.16 eAED:0.16 QI:353|1|0.5|1|0|0.5|2|0|497; (*GB) gi|225454755|ref|XP_002273949.1| (e_value=7e-164) PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera];; (*SWP) sp|Q84T61|HSFA1_ORYSJ (e_value=3e-137) Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1;; (*TAIR) AT5G16820.2 (e_value=4e-132) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc03g097120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52901766-52904929 transcript_region:SL2.40ch03:52901766..52904929- go_terms:GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00015249g0017.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.66|0.66|1|1|3|0|395; (*GB) gi|225461774|ref|XP_002285602.1| (e_value=0.0) PREDICTED: TOM1-like protein 2 [Vitis vinifera];; (*SWP) sp|Q5SRX1|TM1L2_MOUSE (e_value=7e-23) TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1;; (*TAIR) AT5G16880.2 (e_value=0.0) | Symbols: | Target of Myb protein 1 | chr5:5549658-5551274 FORWARD LENGTH=407;; (*ITAG) Solyc03g097070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52862873-52870296 transcript_region:SL2.40ch03:52862873..52870296- go_terms:GO:0008565 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR014645 Target of Myb protein 1 "; GO:0008565 NbS00015249g0020.1 protein AED:0.25 eAED:0.25 QI:21|0.5|0.33|1|0|0.33|3|377|89 NbS00015249g0026.1 protein AED:0.32 eAED:0.36 QI:0|0.75|0.4|1|1|1|5|476|297; (*GB) gi|225454759|ref|XP_002274164.1| (e_value=8e-145) PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera];; (*TAIR) AT4G17720.1 (e_value=2e-122) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc03g097110.2.1 (e_value=9e-177) genomic_reference:SL2.40ch03 gene_region:52892623-52898264 transcript_region:SL2.40ch03:52892623..52898264- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00027710g0013.1 protein AED:0.15 eAED:0.15 QI:220|1|1|1|1|1|2|109|333; (*GB) gi|225430641|ref|XP_002267590.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100243390 [Vitis vinifera];; (*TAIR) AT5G41270.1 (e_value=8e-34) | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16507797-16508813 FORWARD LENGTH=258;; (*ITAG) Solyc08g081040.2.1 (e_value=1e-120) genomic_reference:SL2.40ch08 gene_region:61329962-61331992 transcript_region:SL2.40ch08:61329962..61331992+ functional_description:"Genomic DNA chromosome 5 TAC clone K1O13 (AHRD V1 *-*- Q9FHD6_ARATH); contains Interpro domain(s) IPR007175 RNAse P, Rpr2/Rpp21 subunit "; NbS00027710g0019.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|0|0.5|2|0|114; (*ITAG) Solyc08g074530.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00027710g0015.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|616|723; (*GB) gi|225426422|ref|XP_002270125.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246220 [Vitis vinifera];; (*TAIR) AT4G11450.1 (e_value=5e-119) | Symbols: | Protein of unknown function (DUF3527) | chr4:6959065-6961223 REVERSE LENGTH=694;; (*ITAG) Solyc08g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61346739-61349708 transcript_region:SL2.40ch08:61346739..61349708+ functional_description:"Os10g0550700 protein (Fragment) (AHRD V1 *-*- Q0IVV8_ORYSJ)"; NbS00027710g0022.1 protein AED:0.05 eAED:0.05 QI:0|0.87|0.88|1|0.75|0.66|9|279|640; (*GB) gi|224058512|ref|XP_002299533.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G11560.1 (e_value=5e-174) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587;; (*ITAG) Solyc08g081050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00027710g0014.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|3|368|338; (*GB) gi|225433688|ref|XP_002266909.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera];; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2;; (*TAIR) AT1G10840.1 (e_value=0.0) | Symbols: TIF3H1 | translation initiation factor 3 subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337;; (*ITAG) Solyc09g098280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67425417-67431175 transcript_region:SL2.40ch09:67425417..67431175+ go_terms:GO:0032403 functional_description:"Eukaryotic translation initiation factor 3 subunit 3 (AHRD V1 ***- B4FR57_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0032403 NbS00027710g0018.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|2|0|203; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-19) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=6e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001529g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.42|0.85|0.83|0.71|7|0|398; (*GB) gi|356500447|ref|XP_003519043.1| (e_value=7e-160) PREDICTED: LOW QUALITY PROTEIN: protein kinase 2B, chloroplastic-like [Glycine max];; (*SWP) sp|O49840|APK2B_ARATH (e_value=2e-155) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=2e-156) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc12g077390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:56895545-56897576 transcript_region:SL2.40ch12:56895545..56897576- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001529g0006.1 protein AED:0.16 eAED:0.88 QI:0|0|0|0.66|1|1|3|0|787; (*GB) gi|224111446|ref|XP_002315858.1| (e_value=4e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=6e-51) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=3e-70) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=3e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00001529g0017.1 protein AED:0.19 eAED:0.24 QI:0|0.68|0.58|0.94|0.75|0.64|17|0|711; (*GB) gi|356513540|ref|XP_003525471.1| (e_value=0.0) PREDICTED: ABC transporter A family member 7-like [Glycine max];; (*SWP) sp|Q8LPK0|AB8A_ARATH (e_value=0.0) ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8 PE=2 SV=3;; (*TAIR) AT3G47790.1 (e_value=0.0) | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:17629584-17633711 FORWARD LENGTH=901;; (*ITAG) Solyc06g070950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39956611-39964617 transcript_region:SL2.40ch06:39956611..39964617- go_terms:GO:0042626 functional_description:"ATP-binding cassette (ABC) transporter 17 (AHRD V1 ***- Q4H493_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00001529g0016.1 protein AED:0.47 eAED:0.64 QI:0|0|0|1|0|0|2|0|71; (*ITAG) Solyc06g070950.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39956611-39964617 transcript_region:SL2.40ch06:39956611..39964617- go_terms:GO:0042626 functional_description:"ATP-binding cassette (ABC) transporter 17 (AHRD V1 ***- Q4H493_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00047452g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.14|1|0.66|0.42|7|0|687; (*GB) gi|225458408|ref|XP_002281889.1| (e_value=3e-157) PREDICTED: BEL1-like homeodomain protein 2-like [Vitis vinifera];; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=5e-114) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=4e-115) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc04g079830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61729325-61740234 transcript_region:SL2.40ch04:61729325..61740234- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 *--- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00047452g0011.1 protein AED:0.54 eAED:0.86 QI:0|0|0|0.66|1|0.33|3|0|159; (*GB) gi|302142426|emb|CBI19629.3| (e_value=2e-85) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5EAF2|IP5PB_ARATH (e_value=9e-67) Type I inositol 1,4,5-trisphosphate 5-phosphatase 11 OS=Arabidopsis thaliana GN=At1g47510 PE=2 SV=1;; (*TAIR) AT1G47510.1 (e_value=7e-68) | Symbols: AT5PTASE11, 5PTASE11 | inositol polyphosphate 5-phosphatase 11 | chr1:17435991-17438296 REVERSE LENGTH=334;; (*ITAG) Solyc04g079820.2.1 (e_value=1e-106) genomic_reference:SL2.40ch04 gene_region:61722723-61726819 transcript_region:SL2.40ch04:61722723..61726819+ go_terms:GO:0004437 functional_description:"Inositol 5-phosphatase 4 (AHRD V1 ***- Q8I7P3_DICDI); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00056781g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|225426506|ref|XP_002271695.1| (e_value=6e-92) PREDICTED: B3 domain-containing protein Os03g0120900-like [Vitis vinifera];; (*SWP) sp|Q8LMR9|Y3209_ORYSJ (e_value=9e-74) B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1;; (*TAIR) AT1G01030.1 (e_value=2e-71) | Symbols: NGA3 | AP2/B3-like transcriptional factor family protein | chr1:11864-12940 REVERSE LENGTH=358;; (*ITAG) Solyc08g083400.2.1 (e_value=8e-119) genomic_reference:SL2.40ch08 gene_region:63026330-63027661 transcript_region:SL2.40ch08:63026330..63027661+ go_terms:GO:0006355 functional_description:"Auxin response factor 24 (AHRD V1 *-*- D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00054324g0002.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|1|1|2|0|399; (*GB) gi|356559882|ref|XP_003548225.1| (e_value=1e-138) PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max];; (*SWP) sp|Q9FNZ2|C3H48_ARATH (e_value=1e-130) Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1;; (*TAIR) AT4G25440.1 (e_value=1e-131) | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1 | chr4:13007107-13009381 REVERSE LENGTH=430;; (*ITAG) Solyc03g026350.2.1 (e_value=2e-158) genomic_reference:SL2.40ch03 gene_region:8163707-8171791 transcript_region:SL2.40ch03:8163707..8171791+ go_terms:GO:0008270 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MJ15_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00054324g0011.1 protein AED:0.09 eAED:0.09 QI:199|0.88|0.81|1|0.65|0.59|27|513|1505; (*GB) gi|296087564|emb|CBI34153.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Z0W3|NU160_MOUSE (e_value=9e-32) Nuclear pore complex protein Nup160 OS=Mus musculus GN=Nup160 PE=1 SV=2;; (*TAIR) AT1G33410.2 (e_value=0.0) | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504;; (*ITAG) Solyc01g102540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83081913-83093458 transcript_region:SL2.40ch01:83081913..83093458- go_terms:GO:0003993 functional_description:"Nucleoporin (AHRD V1 *-*- C0KG86_DROSI)"; GO:0003993 NbS00054324g0003.1 protein AED:0.09 eAED:0.09 QI:397|0.83|0.71|1|1|1|7|353|613; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=0.0) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|Q38890|GUN25_ARATH (e_value=0.0) Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1;; (*TAIR) AT5G49720.1 (e_value=0.0) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc01g102580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83117822-83121772 transcript_region:SL2.40ch01:83117822..83121772- go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00005615g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.9|0.90|1|0.8|0.72|11|0|868; (*GB) gi|56744189|dbj|BAD81034.1| (e_value=0.0) potassium channel NKT1 [Nicotiana tabacum];; (*SWP) sp|Q38998|AKT1_ARATH (e_value=0.0) Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2;; (*TAIR) AT2G26650.1 (e_value=0.0) | Symbols: AKT1, ATAKT1, KT1 | K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857;; (*ITAG) Solyc08g066990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53088640-53094422 transcript_region:SL2.40ch08:53088640..53094422- go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** O24382_SOLTU); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00005615g0010.1 protein AED:0.16 eAED:0.17 QI:0|0.85|0.8|0.93|0.85|0.86|15|175|701; (*GB) gi|225430194|ref|XP_002282436.1| (e_value=0.0) PREDICTED: boron transporter 4 [Vitis vinifera];; (*SWP) sp|Q9XI23|BOR4_ARATH (e_value=0.0) Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1;; (*TAIR) AT1G15460.1 (e_value=0.0) | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683;; (*ITAG) Solyc08g066960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53054985-53063067 transcript_region:SL2.40ch08:53054985..53063067+ go_terms:GO:0046715 functional_description:"Boron transporter 2 (AHRD V1 **-* A8WCD9_WHEAT); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0046715 NbS00024542g0005.1 protein AED:0.00 eAED:0.00 QI:59|1|1|1|0|0.5|2|90|183; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00034160g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|563; (*GB) gi|356537299|ref|XP_003537166.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100787547 isoform 1 [Glycine max];; (*TAIR) AT2G37570.1 (e_value=1e-158) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc09g010640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3969447-3971560 transcript_region:SL2.40ch09:3969447..3971560- go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC)"; GO:0006508 NbS00013409g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|225438928|ref|XP_002284084.1| (e_value=1e-15) PREDICTED: uncharacterized protein LOC100244040 [Vitis vinifera]; NbS00007234g0004.1 protein AED:0.40 eAED:0.40 QI:144|0.87|0.77|1|0.12|0.44|9|0|245; (*GB) gi|356576105|ref|XP_003556174.1| (e_value=3e-111) PREDICTED: uncharacterized protein LOC100784044 [Glycine max];; (*TAIR) AT1G22750.4 (e_value=2e-74) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:8050911-8052714 FORWARD LENGTH=257;; (*ITAG) Solyc04g072050.2.1 (e_value=1e-141) genomic_reference:SL2.40ch04 gene_region:56701049-56708339 transcript_region:SL2.40ch04:56701049..56708339- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009943 Protein of unknown function DUF1475 "; NbS00007234g0001.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|110; (*GB) gi|340806832|gb|AEK71475.1| (e_value=3e-31) hypothetical chloroplast RF2 [Eucryphia lucida];; (*SWP) sp|Q0ZIV6|YCF2_VITVI (e_value=9e-33) Protein ycf2 OS=Vitis vinifera GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-25) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00016044g0020.1 protein AED:0.12 eAED:0.12 QI:256|0.5|0.8|0.8|0|0|5|503|179; (*GB) gi|255573645|ref|XP_002527745.1| (e_value=1e-72) plant origin recognition complex subunit, putative [Ricinus communis];; (*SWP) sp|Q38899|ORC2_ARATH (e_value=3e-55) Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1;; (*TAIR) AT2G37560.1 (e_value=2e-56) | Symbols: ORC2, ATORC2 | origin recognition complex second largest subunit 2 | chr2:15759568-15761116 FORWARD LENGTH=363;; (*ITAG) Solyc06g073510.2.1 (e_value=1e-94) genomic_reference:SL2.40ch06 gene_region:41699563-41703139 transcript_region:SL2.40ch06:41699563..41703139+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 2 (AHRD V1 ***- Q9XFD6_ORYSJ); contains Interpro domain(s) IPR007220 Origin recognition complex subunit 2 "; GO:0042802 NbS00016044g0023.1 protein AED:0.19 eAED:0.19 QI:335|0.93|0.93|1|0.86|0.81|16|878|911; (*GB) gi|297738122|emb|CBI27323.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P78316|NOP14_HUMAN (e_value=1e-33) Nucleolar protein 14 OS=Homo sapiens GN=NOP14 PE=1 SV=3;; (*TAIR) AT1G69070.1 (e_value=2e-154) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | chr1:25967421-25971389 REVERSE LENGTH=901;; (*ITAG) Solyc05g011990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5194960-5203690 transcript_region:SL2.40ch05:5194960..5203690- go_terms:GO:0030515,GO:0005515 functional_description:"Nucleolar protein 14 (AHRD V1 *--- A8NZ00_COPC7); contains Interpro domain(s) IPR007276 Nop14-like protein "; GO:0030515,GO:0005515 NbS00016044g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|253; (*GB) gi|356547489|ref|XP_003542144.1| (e_value=3e-92) PREDICTED: probable receptor-like protein kinase At1g11050-like [Glycine max];; (*SWP) sp|O04086|Y1105_ARATH (e_value=3e-55) Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1;; (*TAIR) AT1G11050.1 (e_value=2e-56) | Symbols: | Protein kinase superfamily protein | chr1:3681892-3683769 FORWARD LENGTH=625;; (*ITAG) Solyc01g104050.2.1 (e_value=7e-56) genomic_reference:SL2.40ch01 gene_region:84290143-84292557 transcript_region:SL2.40ch01:84290143..84292557- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM41_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016044g0005.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|356547489|ref|XP_003542144.1| (e_value=3e-52) PREDICTED: probable receptor-like protein kinase At1g11050-like [Glycine max];; (*SWP) sp|O04086|Y1105_ARATH (e_value=2e-41) Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1;; (*TAIR) AT1G11050.1 (e_value=1e-42) | Symbols: | Protein kinase superfamily protein | chr1:3681892-3683769 FORWARD LENGTH=625;; (*ITAG) Solyc01g104050.2.1 (e_value=6e-42) genomic_reference:SL2.40ch01 gene_region:84290143-84292557 transcript_region:SL2.40ch01:84290143..84292557- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM41_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016044g0018.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc05g011990.2.1 (e_value=3e-13) genomic_reference:SL2.40ch05 gene_region:5194960-5203690 transcript_region:SL2.40ch05:5194960..5203690- go_terms:GO:0030515,GO:0005515 functional_description:"Nucleolar protein 14 (AHRD V1 *--- A8NZ00_COPC7); contains Interpro domain(s) IPR007276 Nop14-like protein "; GO:0030515,GO:0005515 NbS00016044g0024.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|0.5|0.33|3|0|75 NbS00016044g0021.1 protein AED:0.09 eAED:0.09 QI:842|0.5|0.33|0.66|0.5|0.66|3|597|64 NbS00016044g0022.1 protein AED:0.58 eAED:0.58 QI:0|1|0|1|1|1|2|0|75; (*GB) gi|225465010|ref|XP_002264665.1| (e_value=8e-24) PREDICTED: protein KRTCAP2 homolog [Vitis vinifera];; (*TAIR) AT1G77350.2 (e_value=3e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29070497-29071545 FORWARD LENGTH=122;; (*ITAG) Solyc11g005000.1.1 (e_value=3e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:8301-11298 transcript_region:SL2.40ch11:8301..11298- functional_description:"Keratinocytes-associated protein 2 (AHRD V1 ***- B6SJ34_MAIZE); contains Interpro domain(s) IPR018614 Protein of unknown function KRTCAP2 "; NbS00005630g0005.1 protein AED:0.00 eAED:0.00 QI:249|1|0.5|1|0|0.5|2|0|196; (*GB) gi|224107919|ref|XP_002314653.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14660.1 (e_value=3e-35) | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178;; (*ITAG) Solyc09g083340.1.1 (e_value=1e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64404324-64404842 transcript_region:SL2.40ch09:64404324..64404842- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit RPB7 (AHRD V1 **** RPB7_ARATH); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003899 NbS00005630g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|757|168; (*GB) gi|225432912|ref|XP_002284210.1| (e_value=2e-21) PREDICTED: PRA1 family protein D-like [Vitis vinifera];; (*SWP) sp|P93829|PRA1D_ARATH (e_value=1e-18) PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1;; (*TAIR) AT1G04260.1 (e_value=9e-20) | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement protein interacting protein 7 | chr1:1140749-1141297 REVERSE LENGTH=182;; (*ITAG) Solyc09g083320.1.1 (e_value=5e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64392184-64392690 transcript_region:SL2.40ch09:64392184..64392690- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00005630g0014.1 protein AED:0.25 eAED:0.26 QI:351|1|0.91|1|0.81|0.75|12|0|422; (*GB) gi|3121837|sp|O04940.1|CDS1_SOLTU (e_value=0.0) RecName: Full=Phosphatidate cytidylyltransferase; AltName: Full=CDP-DAG synthase; AltName: Full=CDP-DG synthase; AltName: Full=CDP-diacylglycerol synthase; Short=CDS; AltName: Full=CDP-diglyceride pyrophosphorylase; AltName: Full=CDP-diglyceride synthase; AltName: Full=CTP:phosphatidate cytidylyltransferase;; (*SWP) sp|O04940|CDS1_SOLTU (e_value=0.0) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G22340.1 (e_value=0.0) | Symbols: CDS2 | cytidinediphosphate diacylglycerol synthase 2 | chr4:11800150-11802549 REVERSE LENGTH=423;; (*ITAG) Solyc09g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64394232-64401859 transcript_region:SL2.40ch09:64394232..64401859- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RXC8_RICCO); contains Interpro domain(s) IPR016720 Phosphatidate cytidylyltransferase, eukaryota "; GO:0004605 NbS00005630g0003.1 protein AED:0.36 eAED:0.37 QI:0|1|0.5|1|1|1|4|0|187; (*GB) gi|255551941|ref|XP_002517015.1| (e_value=8e-86) 40S ribosomal protein S15, putative [Ricinus communis];; (*SWP) sp|O65059|RS15_PICMA (e_value=6e-82) 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09500.1 (e_value=2e-74) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc06g053820.2.1 (e_value=2e-90) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00005630g0018.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|0.5|0.33|3|591|131; (*GB) gi|114145390|dbj|BAF30984.1| (e_value=1e-67) basic helix-loop-helix protein [Nicotiana tabacum];; (*ITAG) Solyc09g083360.2.1 (e_value=5e-41) genomic_reference:SL2.40ch09 gene_region:64419034-64421479 transcript_region:SL2.40ch09:64419034..64421479+ go_terms:GO:0003700 functional_description:"Basic helix-loop-helix protein (AHRD V1 ***- Q0KK48_TOBAC); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005630g0019.1 protein AED:0.18 eAED:0.18 QI:267|1|0.88|1|0.75|0.77|9|330|860; (*GB) gi|225432918|ref|XP_002280226.1| (e_value=0.0) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6YYA3|CRS1_ORYSJ (e_value=7e-113) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1;; (*TAIR) AT3G23070.1 (e_value=0.0) | Symbols: ATCFM3A, CFM3A | CRM family member 3A | chr3:8203548-8207243 FORWARD LENGTH=881;; (*ITAG) Solyc09g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64410108-64416669 transcript_region:SL2.40ch09:64410108..64416669+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00034054g0003.1 protein AED:0.10 eAED:0.18 QI:6|1|0|1|1|1|2|60|155; (*GB) gi|111162637|gb|ABH07505.1| (e_value=7e-52) glycine-rich RNA-binding protein [Nicotiana attenuata];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=2e-48) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=2e-44) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc01g109660.2.1 (e_value=1e-50) genomic_reference:SL2.40ch01 gene_region:88321513-88322795 transcript_region:SL2.40ch01:88321513..88322795+ go_terms:GO:0008266 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00023821g0010.1 protein AED:0.08 eAED:0.09 QI:0|1|0.75|1|1|1|4|0|817; (*GB) gi|297744529|emb|CBI37791.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G35240.2 (e_value=3e-172) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:16761334-16764324 REVERSE LENGTH=865;; (*ITAG) Solyc10g074470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57327353-57331826 transcript_region:SL2.40ch10:57327353..57331826- functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00023821g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.66|1|1|1|3|231|312; (*GB) gi|116314|sp|P08252.2|CHI1_TOBAC (e_value=0.0) RecName: Full=Endochitinase A; Short=CHN-A; Flags: Precursor;; (*SWP) sp|P08252|CHI1_TOBAC (e_value=0.0) Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2;; (*TAIR) AT3G12500.1 (e_value=5e-142) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g055810.1.1 (e_value=4e-178) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52891942-52893092 transcript_region:SL2.40ch10:52891942..52893092- go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR018371 Chitin-binding, type 1, conserved site IPR000726 Glycoside hydrolase, family 19, catalytic IPR001002 Chitin-binding, type 1 "; GO:0008843 NbS00023821g0012.1 protein AED:0.07 eAED:0.08 QI:0|0|0.33|1|0|0|3|440|244; (*GB) gi|224078478|ref|XP_002305547.1| (e_value=8e-83) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9FIW5|NAC94_ARATH (e_value=1e-27) Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=2 SV=1;; (*TAIR) AT2G17040.1 (e_value=1e-62) | Symbols: anac036, NAC036 | NAC domain containing protein 36 | chr2:7407123-7408120 FORWARD LENGTH=276;; (*ITAG) Solyc10g055760.1.1 (e_value=6e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52871391-52872402 transcript_region:SL2.40ch10:52871391..52872402+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H1P6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00060957g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|0|352; (*GB) gi|157093728|gb|ABV22590.1| (e_value=0.0) KDEL-tailed cysteine endopeptidase [Solanum lycopersicum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=4e-180) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=5e-172) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00009559g0004.1 protein AED:0.46 eAED:0.46 QI:0|0.2|0.33|0.83|0.6|0.83|6|0|131; (*GB) gi|3560474|gb|AAC34951.1| (e_value=2e-21) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LM02|SMT1_ARATH (e_value=1e-18) Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1;; (*TAIR) AT5G13710.2 (e_value=8e-20) | Symbols: SMT1, CPH | sterol methyltransferase 1 | chr5:4424048-4426866 REVERSE LENGTH=336;; (*ITAG) Solyc01g087560.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:74268028-74274007 transcript_region:SL2.40ch01:74268028..74274007+ go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** Q2QDF7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00047303g0002.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc03g119180.1.1 (e_value=8e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:61910021-61910245 transcript_region:SL2.40ch03:61910021..61910245- functional_description:"Unknown Protein (AHRD V1)"; NbS00047303g0012.1 protein AED:0.16 eAED:0.38 QI:0|0.5|0|1|0|0|3|0|107; (*GB) gi|224133136|ref|XP_002321491.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJQ5|RTNLI_ARATH (e_value=6e-24) Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1;; (*TAIR) AT3G18260.1 (e_value=5e-25) | Symbols: | Reticulon family protein | chr3:6260328-6261504 REVERSE LENGTH=225;; (*ITAG) Solyc03g119190.2.1 (e_value=6e-45) genomic_reference:SL2.40ch03 gene_region:61911647-61913094 transcript_region:SL2.40ch03:61911647..61913094- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7LDX0_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00047303g0009.1 protein AED:0.05 eAED:0.05 QI:101|0.75|0.8|1|0.75|0.8|5|322|430; (*GB) gi|225456018|ref|XP_002279561.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256054 [Vitis vinifera];; (*TAIR) AT4G21460.1 (e_value=2e-158) | Symbols: | Ribosomal protein S24/S35, mitochondrial | chr4:11428530-11430390 FORWARD LENGTH=415;; (*ITAG) Solyc03g119170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61905241-61909056 transcript_region:SL2.40ch03:61905241..61909056+ functional_description:"AGL140Cp (AHRD V1 *-*- Q750S9_ASHGO); contains Interpro domain(s) IPR019349 Ribosomal protein S24/S35, mitochondrial "; NbS00047303g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.66|1|0.37|0.22|9|336|516; (*GB) gi|225456012|ref|XP_002277056.1| (e_value=0.0) PREDICTED: l-Ala-D/L-Glu epimerase [Vitis vinifera];; (*SWP) sp|Q9WXM1|AEEP_THEMA (e_value=8e-42) L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1;; (*TAIR) AT3G18270.1 (e_value=1e-179) | Symbols: CYP77A5P | cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene | chr3:6262010-6264025 FORWARD LENGTH=410;; (*ITAG) Solyc03g119200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61916311-61921325 transcript_region:SL2.40ch03:61916311..61921325+ go_terms:GO:0016855,GO:0018838 functional_description:"Mandelate racemase/muconate lactonizing enzyme family protein (AHRD V1 **** A9GEI3_SORC5); contains Interpro domain(s) IPR001354 Mandelate racemase/muconate lactonizing enzyme "; GO:0016855,GO:0018838 NbC24627104g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|38154485|gb|AAR12194.1| (e_value=1e-64) molecular chaperone Hsp90-2 [Nicotiana benthamiana];; (*SWP) sp|Q07078|HSP83_ORYSJ (e_value=6e-64) Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2;; (*TAIR) AT5G56030.1 (e_value=4e-63) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=4e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00015191g0007.1 protein AED:0.13 eAED:0.13 QI:237|1|1|1|0.8|0.63|11|363|676; (*GB) gi|255568510|ref|XP_002525229.1| (e_value=0.0) Glycosyltransferase QUASIMODO1, putative [Ricinus communis];; (*SWP) sp|Q93ZX7|GAUT4_ARATH (e_value=0.0) Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1;; (*TAIR) AT5G47780.1 (e_value=0.0) | Symbols: GAUT4 | galacturonosyltransferase 4 | chr5:19347991-19350517 FORWARD LENGTH=616;; (*ITAG) Solyc04g015270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5473221-5478626 transcript_region:SL2.40ch04:5473221..5478626+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00008133g0003.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.28|1|1|7|0|236 NbS00008133g0112.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|0.5|0.33|3|276|143 NbS00008133g0118.1 protein AED:0.19 eAED:0.21 QI:0|0.85|0.81|1|0.57|0.68|22|201|711 NbS00008133g0113.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0|0.66|1|0.66|3|0|119 NbS00008133g0119.1 protein AED:0.40 eAED:0.40 QI:446|1|1|1|0.83|0.85|7|196|129 NbS00009497g0001.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|100; (*ITAG) Solyc01g056950.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00041947g0004.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0.5|0.33|3|0|434; (*GB) gi|308229874|gb|ADO24345.1| (e_value=0.0) cytochrome P450 A [Capsicum annuum];; (*SWP) sp|O81117|C94A1_VICSA (e_value=3e-89) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT3G48520.1 (e_value=3e-139) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc03g111300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55969688-55971163 transcript_region:SL2.40ch03:55969688..55971163+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00049710g0005.1 protein AED:0.04 eAED:0.04 QI:382|1|1|1|1|1|2|397|963; (*GB) gi|296084035|emb|CBI24423.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P43298|TMK1_ARATH (e_value=1e-141) Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=2 SV=1;; (*TAIR) AT2G01820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:357664-360681 REVERSE LENGTH=943;; (*ITAG) Solyc06g074070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42173386-42177532 transcript_region:SL2.40ch06:42173386..42177532- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00022627g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|250; (*GB) gi|89280647|ref|YP_514864.1| (e_value=4e-143) envelope membrane protein [Solanum lycopersicum];; (*SWP) sp|Q2MI88|CEMA_SOLLC (e_value=1e-144) Chloroplast envelope membrane protein OS=Solanum lycopersicum GN=cemA PE=3 SV=1;; (*ITAG) ATCG00530.1 (e_value=7e-86) | Symbols: YCF10 | CemA-like proton extrusion protein-related | chrC:60741-61430 FORWARD LENGTH=229;; (*ITAG) Solyc01g007370.2.1 (e_value=7e-146) genomic_reference:SL2.40ch01 gene_region:1858374-1859112 transcript_region:SL2.40ch01:1858374..1859112+ go_terms:GO:0016021 functional_description:"Chloroplast envelope membrane protein A (AHRD V1 ***- D7KRA3_ARALY); contains Interpro domain(s) IPR004282 CemA "; GO:0016021 NbS00014788g0004.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|268; (*GB) gi|225447417|ref|XP_002276175.1| (e_value=2e-43) PREDICTED: fasciclin-like arabinogalactan protein 21-like [Vitis vinifera];; (*SWP) sp|Q9FL53|FLA21_ARATH (e_value=4e-28) Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana GN=FLA21 PE=2 SV=1;; (*TAIR) AT5G06920.1 (e_value=3e-29) | Symbols: FLA21 | FASCICLIN-like arabinogalactan protein 21 precursor | chr5:2142858-2143919 FORWARD LENGTH=353;; (*ITAG) Solyc07g053000.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58748821-58749873 transcript_region:SL2.40ch07:58748821..58749873+ go_terms:GO:0005524 functional_description:"Fasciclin-like arabinogalactan protein (AHRD V1 ***- B9N201_POPTR); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005524 NbS00010984g0015.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|395; (*GB) gi|224071449|ref|XP_002303465.1| (e_value=1e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=5e-120) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=4e-121) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc12g010910.1.1 (e_value=3e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3811811-3813376 transcript_region:SL2.40ch12:3811811..3813376- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00010984g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.44|1|0.37|0.44|9|0|689; (*GB) gi|359472991|ref|XP_003631226.1| (e_value=0.0) PREDICTED: potassium transporter 5-like [Vitis vinifera];; (*SWP) sp|Q6H4L9|HAK20_ORYSJ (e_value=2e-148) Potassium transporter 20 OS=Oryza sativa subsp. japonica GN=HAK20 PE=2 SV=1;; (*TAIR) AT4G13420.1 (e_value=2e-120) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=4e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00010984g0014.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|266 NbS00010984g0013.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|3|0|713; (*GB) gi|329739345|gb|AEB97385.1| (e_value=0.0) MAX2B [Petunia x hybrida];; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=0.0) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2;; (*TAIR) AT2G42620.1 (e_value=0.0) | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693;; (*ITAG) Solyc12g010900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3807527-3809695 transcript_region:SL2.40ch12:3807527..3809695+ functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00018819g0008.1 protein AED:0.40 eAED:0.41 QI:0|0.5|0.4|0.8|0.5|0.6|5|0|183; (*GB) gi|224137504|ref|XP_002322574.1| (e_value=7e-18) predicted protein [Populus trichocarpa]; NbS00018819g0110.1 protein AED:0.11 eAED:0.11 QI:51|1|0.5|1|0|0|2|222|99 NbS00018819g0114.1 protein AED:0.16 eAED:0.24 QI:49|0.75|0.69|1|0.25|0.30|13|0|485 NbS00018819g0113.1 protein AED:0.08 eAED:0.10 QI:22|0|0|0.66|0|0|3|0|270 NbS00006127g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|3|0|368; (*GB) gi|2500518|sp|Q40465.1|IF411_TOBAC (e_value=2e-107) RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11; AltName: Full=ATP-dependent RNA helicase eIF4A-11;; (*SWP) sp|Q40465|IF411_TOBAC (e_value=5e-109) Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=2e-97) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc08g062800.2.1 (e_value=2e-108) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00013985g0010.1 protein AED:0.07 eAED:0.07 QI:210|0.77|0.8|1|0.66|0.7|10|0|457; (*GB) gi|255548778|ref|XP_002515445.1| (e_value=0.0) chromodomain helicase DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:22727475-22749048 transcript_region:SL2.40ch08:22727475..22749048+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00013985g0011.1 protein AED:0.39 eAED:0.46 QI:43|0.28|0.12|0.5|1|0.87|8|0|289; (*GB) gi|255548778|ref|XP_002515445.1| (e_value=0.0) chromodomain helicase DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc06g065730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37557813-37598461 transcript_region:SL2.40ch06:37557813..37598461+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00044790g0005.1 protein AED:0.39 eAED:0.42 QI:45|0.6|0.5|1|0.6|0.66|6|257|179; (*GB) gi|302142980|emb|CBI20275.3| (e_value=2e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUH2|ALF5_ARATH (e_value=9e-44) MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1;; (*TAIR) AT3G23560.1 (e_value=7e-45) | Symbols: ALF5 | MATE efflux family protein | chr3:8454361-8456588 REVERSE LENGTH=477;; (*ITAG) Solyc10g007360.2.1 (e_value=2e-71) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00044790g0008.1 protein AED:0.46 eAED:0.79 QI:61|0|0|1|1|1|2|0|77; (*ITAG) Solyc10g007360.2.1 (e_value=9e-14) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00044790g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.37|0.33|0.77|0.37|0.55|9|423|449; (*GB) gi|255569305|ref|XP_002525620.1| (e_value=0.0) alpha-1,3-mannosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q7KWM5|ALG2_DICDI (e_value=2e-92) Alpha-1,3/1,6-mannosyltransferase ALG2 OS=Dictyostelium discoideum GN=alg2 PE=3 SV=1;; (*TAIR) AT1G78800.1 (e_value=2e-173) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:29625859-29627941 REVERSE LENGTH=403;; (*ITAG) Solyc06g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44575895-44579139 transcript_region:SL2.40ch06:44575895..44579139- go_terms:GO:0004378,GO:0033164 functional_description:"Alpha-1 3-mannosyltransferase ALG2 (AHRD V1 **-* D3TN82_GLOMM); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0004378,GO:0033164 NbS00029150g0017.1 protein AED:0.10 eAED:0.20 QI:0|0|0|1|0|0.25|4|0|295; (*GB) gi|356577169|ref|XP_003556700.1| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100777990 [Glycine max];; (*TAIR) AT4G19390.1 (e_value=2e-18) | Symbols: | Uncharacterised protein family (UPF0114) | chr4:10574903-10576355 REVERSE LENGTH=273;; (*ITAG) Solyc04g079760.2.1 (e_value=9e-95) genomic_reference:SL2.40ch04 gene_region:61699526-61701530 transcript_region:SL2.40ch04:61699526..61701530+ functional_description:"Os07g0656700 protein (Fragment) (AHRD V1 *--- Q0D403_ORYSJ); contains Interpro domain(s) IPR005134 Uncharacterised protein family UPF0114 "; NbS00029150g0016.1 protein AED:0.24 eAED:0.31 QI:46|0.25|0.22|1|0|0|9|0|451; (*GB) gi|225458432|ref|XP_002283812.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100245429 [Vitis vinifera];; (*TAIR) AT1G48460.1 (e_value=1e-108) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911469-17913149 FORWARD LENGTH=340;; (*ITAG) Solyc04g079740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61693248-61696082 transcript_region:SL2.40ch04:61693248..61696082+ functional_description:"Os01g0704200 protein (Fragment) (AHRD V1 *-*- Q0JK10_ORYSJ)"; NbS00029150g0015.1 protein AED:0.06 eAED:0.07 QI:0|0.8|0.5|1|0.8|0.83|6|513|468; (*GB) gi|359492101|ref|XP_002283679.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266014 [Vitis vinifera];; (*TAIR) AT5G42660.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr5:17103062-17105785 REVERSE LENGTH=463;; (*ITAG) Solyc04g079770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61701807-61705777 transcript_region:SL2.40ch04:61701807..61705777- go_terms:GO:0006810 functional_description:"Glycosyl transferase family 2 (AHRD V1 *--- D3EJR5_GEOS4); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; GO:0006810 NbS00029150g0004.1 protein AED:0.46 eAED:0.46 QI:163|0.66|0.5|1|0.66|0.5|4|0|232; (*GB) gi|225436865|ref|XP_002272498.1| (e_value=3e-107) PREDICTED: biotin/lipoate A/B protein ligase family-like [Vitis vinifera];; (*SWP) sp|Q948J9|LIP2P_ARATH (e_value=4e-97) Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1;; (*TAIR) AT4G31050.1 (e_value=3e-98) | Symbols: | Biotin/lipoate A/B protein ligase family | chr4:15114345-15115443 FORWARD LENGTH=278;; (*ITAG) Solyc04g079750.2.1 (e_value=2e-107) genomic_reference:SL2.40ch04 gene_region:61696179-61698097 transcript_region:SL2.40ch04:61696179..61698097- go_terms:GO:0016979 functional_description:"Octanoyltransferase (AHRD V1 ***- C7QW96_CYAP0); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0016979 NbS00011025g0002.1 protein AED:0.01 eAED:0.03 QI:0|1|0|1|1|1|2|0|345; (*GB) gi|359489983|ref|XP_003634006.1| (e_value=1e-86) PREDICTED: transcription factor MYB39-like [Vitis vinifera];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=4e-69) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G16770.2 (e_value=3e-79) | Symbols: AtMYB9, MYB9 | myb domain protein 9 | chr5:5515209-5516734 FORWARD LENGTH=336;; (*ITAG) Solyc05g051550.1.1 (e_value=8e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61076188-61078333 transcript_region:SL2.40ch05:61076188..61078333+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00010764g0006.1 protein AED:0.36 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|77 NbS00010764g0003.1 protein AED:0.34 eAED:0.77 QI:0|0|0|1|1|0.5|2|0|181; (*ITAG) Solyc02g067970.2.1 (e_value=5e-28) genomic_reference:SL2.40ch02 gene_region:32614978-32617264 transcript_region:SL2.40ch02:32614978..32617264- go_terms:GO:0008270 functional_description:"Tripartite motif-containing 25 (AHRD V1 *--- Q6P7B3_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010764g0002.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|493; (*GB) gi|222080625|gb|ACM41589.1| (e_value=0.0) UDP-glucosyltransferase 1 [Capsicum annuum];; (*SWP) sp|Q66PF4|CGT_FRAAN (e_value=0.0) Cinnamate beta-D-glucosyltransferase OS=Fragaria ananassa GN=GT2 PE=1 SV=1;; (*TAIR) AT4G15480.1 (e_value=1e-171) | Symbols: UGT84A1 | UDP-Glycosyltransferase superfamily protein | chr4:8849000-8850472 REVERSE LENGTH=490;; (*ITAG) Solyc01g107560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86827224-86829017 transcript_region:SL2.40ch01:86827224..86829017- go_terms:GO:0050284 functional_description:"UDP-glucosyltransferase 1 (AHRD V1 **** C6ZRH7_CAPAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0050284 NbS00033068g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|0.55|0.6|10|0|546; (*GB) gi|357519551|ref|XP_003630064.1| (e_value=0.0) Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=5e-86) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT5G65090.1 (e_value=0.0) | Symbols: MRH3, BST1, DER4 | DNAse I-like superfamily protein | chr5:26004282-26006656 FORWARD LENGTH=529;; (*ITAG) Solyc04g054830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52445213-52449024 transcript_region:SL2.40ch04:52445213..52449024+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 ***- Q9FJQ6_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00052742g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.5|1|1|1|6|0|480; (*GB) gi|224139384|ref|XP_002323086.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=0.0) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=0.0) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc10g074930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57961793-57964748 transcript_region:SL2.40ch10:57961793..57964748- go_terms:GO:0006468 functional_description:"Protein kinase 2 (AHRD V1 ***- D3BIR2_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00052742g0007.1 protein AED:0.16 eAED:0.16 QI:335|0.8|0.83|1|0.8|0.83|6|408|376; (*GB) gi|224140621|ref|XP_002323680.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZV3|MAN6_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1;; (*TAIR) AT5G01930.1 (e_value=0.0) | Symbols: MAN6, AtMAN6 | Glycosyl hydrolase superfamily protein | chr5:361189-362867 REVERSE LENGTH=448;; (*ITAG) Solyc10g074920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57959156-57961088 transcript_region:SL2.40ch10:57959156..57961088+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- B4ADW3_BACPU); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00015925g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|231; (*GB) gi|149228007|gb|ABR23001.1| (e_value=5e-116) NPR1 [Nicotiana attenuata];; (*SWP) sp|P93002|NPR1_ARATH (e_value=2e-61) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1;; (*TAIR) AT1G64280.1 (e_value=2e-62) | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory protein (NPR1) | chr1:23853329-23855407 REVERSE LENGTH=593;; (*ITAG) Solyc07g040690.2.1 (e_value=3e-111) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00020145g0008.1 protein AED:0.09 eAED:0.09 QI:108|1|1|1|1|1|6|137|400; (*GB) gi|255552451|ref|XP_002517269.1| (e_value=0.0) Auxin-induced protein 5NG4, putative [Ricinus communis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-64) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=3e-155) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g078270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59428108-59430225 transcript_region:SL2.40ch10:59428108..59430225- go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY45_9BRAS); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00040457g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.5|0.83|0|0.16|6|0|289; (*GB) gi|356572908|ref|XP_003554607.1| (e_value=3e-81) PREDICTED: auxin-induced protein 5NG4-like [Glycine max];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-22) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=8e-79) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g100900.2.1 (e_value=9e-154) genomic_reference:SL2.40ch01 gene_region:82554429-82557650 transcript_region:SL2.40ch01:82554429..82557650+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00040457g0003.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|0|0|2|0|109; (*ITAG) Solyc01g100890.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:82545320-82548817 transcript_region:SL2.40ch01:82545320..82548817+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00061655g0007.1 protein AED:0.16 eAED:0.00 QI:210|1|0.8|1|0.25|0.4|5|55|162; (*GB) gi|225427601|ref|XP_002270881.1| (e_value=1e-32) PREDICTED: F-box protein SKIP31 [Vitis vinifera];; (*SWP) sp|Q9FHK0|SKI31_ARATH (e_value=5e-27) F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1;; (*TAIR) AT5G45360.1 (e_value=3e-28) | Symbols: | F-box family protein | chr5:18384783-18386670 REVERSE LENGTH=316;; (*ITAG) Solyc08g075380.2.1 (e_value=6e-40) genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00061655g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|365|161; (*GB) gi|33667910|gb|AAQ24534.1| (e_value=2e-57) SWIb domain-containing protein [Solanum chacoense];; (*SWP) sp|Q08747|UAF30_YEAST (e_value=2e-14) Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1;; (*TAIR) AT2G35605.1 (e_value=9e-37) | Symbols: | SWIB/MDM2 domain superfamily protein | chr2:14946161-14947027 FORWARD LENGTH=109;; (*ITAG) Solyc08g005590.2.1 (e_value=4e-57) genomic_reference:SL2.40ch08 gene_region:441919-444485 transcript_region:SL2.40ch08:441919..444485+ functional_description:"SWIB/MDM2 domain protein (AHRD V1 ***- B1LUR3_METRJ); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00034919g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|224063078|ref|XP_002300985.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT1G44414.1 (e_value=2e-47) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16847781-16848086 FORWARD LENGTH=101;; (*ITAG) Solyc06g060300.1.1 (e_value=1e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:34672906-34673223 transcript_region:SL2.40ch06:34672906..34673223+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034919g0003.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|3|0|550; (*GB) gi|296085890|emb|CBI31214.3| (e_value=1e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46070|TF3B_KLULA (e_value=4e-36) Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2;; (*TAIR) AT3G09360.1 (e_value=7e-110) | Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604;; (*ITAG) Solyc01g088720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00034919g0007.1 protein AED:0.36 eAED:0.36 QI:0|0.88|0.7|1|0.88|0.7|10|0|505; (*GB) gi|225459587|ref|XP_002285864.1| (e_value=0.0) PREDICTED: protein disulfide-isomerase [Vitis vinifera];; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=0.0) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G21750.1 (e_value=0.0) | Symbols: ATPDIL1-1, ATPDI5, PDI5, PDIL1-1 | PDI-like 1-1 | chr1:7645767-7648514 FORWARD LENGTH=501;; (*ITAG) Solyc06g060290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34649921-34655100 transcript_region:SL2.40ch06:34649921..34655100- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** B1Q2X4_SOYBN); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00033343g0006.1 protein AED:0.17 eAED:0.18 QI:237|0.42|0.37|0.87|0.57|0.5|8|0|817; (*GB) gi|225438111|ref|XP_002277883.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8GWV5|PUB3_ARATH (e_value=1e-100) U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2;; (*TAIR) AT3G54790.2 (e_value=2e-102) | Symbols: | ARM repeat superfamily protein | chr3:20281830-20284255 REVERSE LENGTH=724;; (*ITAG) Solyc09g025270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19293483-19298869 transcript_region:SL2.40ch09:19293483..19298869+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 3 (AHRD V1 **-- PUB3_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00036015g0002.1 protein AED:0.23 eAED:0.31 QI:0|0|0|1|0|0|2|0|96; (*ITAG) Solyc04g080080.2.1 (e_value=2e-22) genomic_reference:SL2.40ch04 gene_region:61956665-61959216 transcript_region:SL2.40ch04:61956665..61959216- go_terms:GO:0005783 functional_description:"Glycosyltransferase family 77 protein (AHRD V1 ***- C1N277_MICPS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00060162g0003.1 protein AED:0.10 eAED:0.10 QI:718|1|1|1|0.83|0.71|7|2111|226; (*GB) gi|359474294|ref|XP_002279852.2| (e_value=4e-94) PREDICTED: uncharacterized protein LOC100258615 [Vitis vinifera];; (*TAIR) AT1G75060.1 (e_value=1e-60) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28181481-28183285 REVERSE LENGTH=242;; (*ITAG) Solyc08g081310.2.1 (e_value=2e-138) genomic_reference:SL2.40ch08 gene_region:61541276-61544893 transcript_region:SL2.40ch08:61541276..61544893- functional_description:"Os10g0358600 protein (Fragment) (AHRD V1 ***- Q0IY80_ORYSJ)"; NbS00022306g0008.1 protein AED:0.11 eAED:0.11 QI:56|0.5|1|1|0.5|0.66|3|432|49 NbS00022306g0004.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|224083141|ref|XP_002306953.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9W3|ATL23_ARATH (e_value=4e-38) E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2;; (*TAIR) AT5G42200.1 (e_value=3e-39) | Symbols: | RING/U-box superfamily protein | chr5:16860523-16861014 FORWARD LENGTH=163;; (*ITAG) Solyc04g081890.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63347131-63347535 transcript_region:SL2.40ch04:63347131..63347535+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00010056g0008.1 protein AED:0.01 eAED:0.01 QI:133|1|1|1|0|0|2|445|72; (*GB) gi|224145402|ref|XP_002325629.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|P46269|QCR8_SOLTU (e_value=5e-44) Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G05370.1 (e_value=2e-41) | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590977-1591869 REVERSE LENGTH=72;; (*ITAG) Solyc06g082680.2.1 (e_value=8e-46) genomic_reference:SL2.40ch06 gene_region:44715736-44718295 transcript_region:SL2.40ch06:44715736..44718295- go_terms:GO:0008121 functional_description:"Cytochrome b-c1 complex subunit 8 (AHRD V1 **** D6BQP2_9ROSI); contains Interpro domain(s) IPR020101 Cytochrome b-c1 complex, subunit 8 "; GO:0008121 NbS00030989g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0.33|1|0|0.33|3|174|257; (*GB) gi|225735324|gb|ACO25627.1| (e_value=3e-51) NBS-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=2e-15) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=5e-16) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g007070.2.1 (e_value=1e-45) genomic_reference:SL2.40ch04 gene_region:791050-796086 transcript_region:SL2.40ch04:791050..796086+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00030989g0012.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|1|1|3|8|120 NbS00030989g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|113205365|gb|AAT66772.2| (e_value=8e-22) NB-ARC domain containing protein [Solanum demissum];; (*SWP) sp|Q6L3Z0|R1B13_SOLDE (e_value=6e-19) Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00020351g0001.1 protein AED:0.32 eAED:0.33 QI:0|0.8|0.5|1|1|1|6|0|502; (*GB) gi|225445774|ref|XP_002274694.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251901 [Vitis vinifera];; (*TAIR) AT4G30780.1 (e_value=1e-139) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr4:14990523-14992855 FORWARD LENGTH=589;; (*ITAG) Solyc07g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:839251-845772 transcript_region:SL2.40ch07:839251..845772- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00020351g0005.1 protein AED:0.34 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|359488130|ref|XP_002272596.2| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100245087 [Vitis vinifera];; (*TAIR) AT5G17460.1 (e_value=4e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5757582-5758867 REVERSE LENGTH=309;; (*ITAG) Solyc02g091320.2.1 (e_value=6e-47) genomic_reference:SL2.40ch02 gene_region:47220962-47224447 transcript_region:SL2.40ch02:47220962..47224447- functional_description:"Unknown Protein (AHRD V1)"; NbS00020351g0002.1 protein AED:0.02 eAED:0.02 QI:233|1|1|1|0.25|0.2|5|342|343; (*ITAG) Solyc07g005980.1.1 (e_value=3e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:820324-821549 transcript_region:SL2.40ch07:820324..821549+ go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00020351g0031.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.5|1|0.6|0.83|6|172|1156; (*GB) gi|225445782|ref|XP_002273616.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267388 [Vitis vinifera];; (*TAIR) AT4G30790.1 (e_value=0.0) | Symbols: | INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). | chr4:14993383-14997785 REVERSE LENGTH=1148;; (*ITAG) Solyc07g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:808577-817510 transcript_region:SL2.40ch07:808577..817510+ go_terms:GO:0006508 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019460 Autophagy-related protein 11 "; GO:0006508 NbS00020351g0012.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|68; (*GB) gi|4106831|gb|AAD03035.1| (e_value=4e-32) apocytochrome b [Solanum tuberosum];; (*SWP) sp|P42792|CYB_ARATH (e_value=2e-32) Cytochrome b OS=Arabidopsis thaliana GN=MT-CYB PE=2 SV=2;; (*ITAG) ATMG00220.1 (e_value=3e-33) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=4e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00020351g0030.1 protein AED:0.06 eAED:0.27 QI:0|0|0.33|1|1|1|3|0|325; (*GB) gi|359488130|ref|XP_002272596.2| (e_value=8e-110) PREDICTED: uncharacterized protein LOC100245087 [Vitis vinifera];; (*TAIR) AT5G17460.2 (e_value=7e-101) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress. | chr5:5757582-5758867 REVERSE LENGTH=329;; (*ITAG) Solyc02g091320.2.1 (e_value=2e-152) genomic_reference:SL2.40ch02 gene_region:47220962-47224447 transcript_region:SL2.40ch02:47220962..47224447- functional_description:"Unknown Protein (AHRD V1)"; NbS00020351g0027.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|332; (*ITAG) Solyc02g091310.1.1 (e_value=5e-157) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47219154-47220517 transcript_region:SL2.40ch02:47219154..47220517+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- B6TJ24_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00020351g0026.1 protein AED:0.47 eAED:0.53 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|225445774|ref|XP_002274694.1| (e_value=7e-15) PREDICTED: uncharacterized protein LOC100251901 [Vitis vinifera];; (*ITAG) Solyc07g005990.2.1 (e_value=7e-22) genomic_reference:SL2.40ch07 gene_region:839251-845772 transcript_region:SL2.40ch07:839251..845772- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00025514g0006.1 protein AED:0.05 eAED:0.05 QI:0|0.6|0.54|1|0.6|0.72|11|0|633; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=0.0) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00028378g0001.1 protein AED:0.03 eAED:0.03 QI:101|0.91|0.84|1|0.83|0.76|13|1689|1263; (*GB) gi|356561166|ref|XP_003548856.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100819035 [Glycine max];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=1e-29) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=2e-88) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc02g062290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28453610-28458350 transcript_region:SL2.40ch02:28453610..28458350+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C1GL98_PARBD); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00028378g0002.1 protein AED:0.13 eAED:0.13 QI:211|0.75|0.8|1|0|0|5|367|398; (*GB) gi|188474277|gb|ACD49738.1| (e_value=3e-66) BURP domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q942D4|BURP3_ORYSJ (e_value=2e-48) BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1;; (*TAIR) AT5G25610.1 (e_value=1e-45) | Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392;; (*ITAG) Solyc02g062300.2.1 (e_value=3e-156) genomic_reference:SL2.40ch02 gene_region:28463464-28465915 transcript_region:SL2.40ch02:28463464..28465915- go_terms:GO:0045735 functional_description:"BURP domain-containing protein (AHRD V1 **-- B2ZPK5_SOLTU); contains Interpro domain(s) IPR004873 BURP "; GO:0045735 NbS00009304g0012.1 protein AED:0.13 eAED:0.21 QI:63|1|0.71|1|0.83|0.71|7|0|205; (*GB) gi|225460123|ref|XP_002275735.1| (e_value=9e-88) PREDICTED: tubulin-specific chaperone E [Vitis vinifera];; (*SWP) sp|Q5QJ74|TBCEL_HUMAN (e_value=2e-17) Tubulin-specific chaperone cofactor E-like protein OS=Homo sapiens GN=TBCEL PE=2 SV=2;; (*TAIR) AT1G71440.1 (e_value=1e-66) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042470.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32151789-32164530 transcript_region:SL2.40ch11:32151789..32164530+ functional_description:"Tubulin-specific chaperone E (AHRD V1 ***- C0S593_PARBP); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; NbS00009304g0013.1 protein AED:0.39 eAED:0.57 QI:73|0.66|0.5|0.75|0.66|0.5|4|0|96; (*GB) gi|147812666|emb|CAN61855.1| (e_value=7e-39) hypothetical protein VITISV_016688 [Vitis vinifera];; (*TAIR) AT1G71440.1 (e_value=1e-34) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042500.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:32178558-32181623 transcript_region:SL2.40ch11:32178558..32181623+ functional_description:"Tubulin folding cofactor (AHRD V1 ***- B9IQ98_POPTR)"; NbS00009304g0008.1 protein AED:0.25 eAED:0.27 QI:148|0.66|0.6|1|1|1|10|0|891; (*GB) gi|357481253|ref|XP_003610912.1| (e_value=6e-156) Far upstream element-binding protein [Medicago truncatula];; (*SWP) sp|Q96I24|FUBP3_HUMAN (e_value=2e-21) Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3 PE=1 SV=2;; (*TAIR) AT4G10070.1 (e_value=2e-68) | Symbols: | KH domain-containing protein | chr4:6295608-6299759 REVERSE LENGTH=725;; (*ITAG) Solyc11g040370.1.1 (e_value=2e-168) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:30623538-30629206 transcript_region:SL2.40ch11:30623538..30629206- go_terms:GO:0003723 functional_description:"Far upstream element-binding protein 3 (AHRD V1 *-*- B5X224_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00059398g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|3|0|164; (*GB) gi|255568098|ref|XP_002525025.1| (e_value=4e-83) phosphofructokinase, putative [Ricinus communis];; (*SWP) sp|Q9FIK0|K6PF2_ARATH (e_value=1e-74) 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1;; (*TAIR) AT5G47810.1 (e_value=7e-76) | Symbols: PFK2 | phosphofructokinase 2 | chr5:19356569-19357989 REVERSE LENGTH=444;; (*ITAG) Solyc04g015200.2.1 (e_value=2e-93) genomic_reference:SL2.40ch04 gene_region:5380570-5383618 transcript_region:SL2.40ch04:5380570..5383618- go_terms:GO:0006096,GO:0005945 functional_description:"6-phosphofructokinase 2 (AHRD V1 ***- B6TE72_MAIZE); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00009813g0012.1 protein AED:0.26 eAED:0.27 QI:0|0.87|0.77|1|0.75|0.88|9|0|707; (*GB) gi|225439610|ref|XP_002267147.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267076 [Vitis vinifera];; (*SWP) sp|Q68FJ8|TM1L2_XENLA (e_value=9e-33) TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1;; (*TAIR) AT2G38410.1 (e_value=1e-131) | Symbols: | ENTH/VHS/GAT family protein | chr2:16086912-16090047 REVERSE LENGTH=671;; (*ITAG) Solyc09g014790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6942345-6947456 transcript_region:SL2.40ch09:6942345..6947456- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein hse1 (AHRD V1 *--- HSE1_EMENI); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00009813g0011.1 protein AED:0.16 eAED:0.16 QI:408|0.91|0.83|1|0.86|0.87|24|0|1356; (*GB) gi|359481183|ref|XP_003632587.1| (e_value=0.0) PREDICTED: regulatory-associated protein of TOR 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q93YQ1|RTOR1_ARATH (e_value=0.0) Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1;; (*TAIR) AT3G08850.1 (e_value=0.0) | Symbols: RAPTOR1B, ATRAPTOR1B, RAPTOR1 | HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344;; (*ITAG) Solyc09g014780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6917876-6935366 transcript_region:SL2.40ch09:6917876..6935366+ go_terms:GO:0032403 functional_description:"WD-repeat protein mip1 (AHRD V1 *--- C5FLG0_NANOT); contains Interpro domain(s) IPR004083 Regulatory associated protein of TOR "; GO:0032403 NbS00009813g0108.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0.5|2|0|469 NbS00009813g0202.1 protein AED:0.37 eAED:0.38 QI:122|0.5|0.66|1|0|0|3|0|130 NbS00035048g0011.1 protein AED:0.13 eAED:0.14 QI:549|0.45|0.33|1|0.54|0.41|12|798|1147; (*GB) gi|255571250|ref|XP_002526575.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT4G28600.1 (e_value=1e-170) | Symbols: NPGR2 | no pollen germination related 2 | chr4:14130046-14132599 FORWARD LENGTH=739;; (*ITAG) Solyc09g072650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60764038-60769179 transcript_region:SL2.40ch09:60764038..60769179+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein MPCBP (AHRD V1 **-* B6U2D5_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005516 NbS00035048g0001.1 protein AED:0.34 eAED:0.34 QI:194|1|0.75|1|1|1|4|0|204; (*GB) gi|7228160|emb|CAB77025.1| (e_value=6e-128) putative Rho GDP dissociation inhibitor [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=4e-50) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=3e-51) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc09g072670.2.1 (e_value=2e-111) genomic_reference:SL2.40ch09 gene_region:60777904-60789755 transcript_region:SL2.40ch09:60777904..60789755+ go_terms:GO:0017048,GO:0005094 functional_description:"Rho GDP dissociation inhibitor 1 (AHRD V1 **** Q705X4_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0017048,GO:0005094 NbS00009293g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.25|0.2|0.8|0.5|0|5|0|373; (*GB) gi|224108067|ref|XP_002314709.1| (e_value=4e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX48|STP9_ARATH (e_value=3e-24) Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1;; (*TAIR) AT1G50310.1 (e_value=2e-25) | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr1:18635984-18638110 FORWARD LENGTH=517;; (*ITAG) Solyc04g051160.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00009293g0003.1 protein AED:0.24 eAED:0.24 QI:36|0.5|0|0.66|1|1|3|0|65 NbS00012481g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|268; (*GB) gi|142942523|gb|ABO93014.1| (e_value=5e-157) putative sterol desaturase [Solanum tuberosum];; (*SWP) sp|Q8VYI1|SBH1_ARATH (e_value=2e-145) Sphingoid base hydroxylase 1 OS=Arabidopsis thaliana GN=SBH1 PE=2 SV=1;; (*TAIR) AT1G69640.1 (e_value=2e-146) | Symbols: SBH1 | sphingoid base hydroxylase 1 | chr1:26193933-26195466 REVERSE LENGTH=260;; (*ITAG) Solyc01g010860.2.1 (e_value=3e-175) genomic_reference:SL2.40ch01 gene_region:6302978-6307253 transcript_region:SL2.40ch01:6302978..6307253+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 *--* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00012481g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|1|0.8|5|0|506; (*GB) gi|142942405|gb|ABO92980.1| (e_value=0.0) putative methyltransferase [Solanum tuberosum];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc01g010870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6308707-6315760 transcript_region:SL2.40ch01:6308707..6315760- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00012481g0014.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|0.77|0.6|10|622|258; (*GB) gi|297844334|ref|XP_002890048.1| (e_value=2e-112) hypothetical protein ARALYDRAFT_312429 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9CYW4|HDHD3_MOUSE (e_value=3e-24) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=2 SV=1;; (*TAIR) AT1G14310.1 (e_value=1e-112) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:4885049-4886672 FORWARD LENGTH=254;; (*ITAG) Solyc01g010830.2.1 (e_value=3e-153) genomic_reference:SL2.40ch01 gene_region:6230907-6239250 transcript_region:SL2.40ch01:6230907..6239250- go_terms:GO:0005515 functional_description:"HAD-superfamily hydrolase (AHRD V1 ***- D5A3P4_SPIPL); contains Interpro domain(s) IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like "; GO:0005515 NbS00012481g0008.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|64 NbS00035948g0009.1 protein AED:0.00 eAED:0.00 QI:311|1|1|1|1|1|6|765|201; (*GB) gi|225465543|ref|XP_002274382.1| (e_value=3e-98) PREDICTED: uncharacterized protein LOC100263614 [Vitis vinifera];; (*TAIR) AT5G58110.1 (e_value=2e-87) | Symbols: | chaperone binding;ATPase activators | chr5:23515275-23516479 FORWARD LENGTH=196; NbS00008727g0005.1 protein AED:0.14 eAED:0.14 QI:1055|0.8|0.66|1|0.8|0.66|6|0|620; (*GB) gi|296081604|emb|CBI20609.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82804|ELF3_ARATH (e_value=9e-61) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=7e-62) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc11g070100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51718068-51722538 transcript_region:SL2.40ch11:51718068..51722538+ functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; NbS00008727g0006.1 protein AED:0.32 eAED:0.35 QI:0|0.77|0.6|0.8|1|1|10|0|596; (*GB) gi|225429422|ref|XP_002276103.1| (e_value=0.0) PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VY07|EPN1_ARATH (e_value=9e-154) Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1;; (*TAIR) AT5G11710.1 (e_value=7e-155) | Symbols: | ENTH/VHS family protein | chr5:3772981-3776316 FORWARD LENGTH=560;; (*ITAG) Solyc11g070110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51723447-51729083 transcript_region:SL2.40ch11:51723447..51729083- functional_description:"Epsin (AHRD V1 *-*- D3BQV6_POLPA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00015962g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|200; (*GB) gi|147803507|emb|CAN68722.1| (e_value=3e-94) hypothetical protein VITISV_033681 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=2e-76) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00003679g0004.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.5|1|0.66|0.5|4|0|283; (*GB) gi|359485998|ref|XP_003633371.1| (e_value=2e-12) PREDICTED: uncharacterized protein At1g10890 isoform 2 [Vitis vinifera];; (*ITAG) Solyc01g104160.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:84387581-84392892 transcript_region:SL2.40ch01:84387581..84392892- functional_description:"Uncharacterised protein At1g10890 (AHRD V1 *--- Y1089_ARATH)"; NbS00008577g0001.1 protein AED:0.22 eAED:0.22 QI:204|0.80|0.86|1|0.95|0.90|22|363|935; (*GB) gi|302142859|emb|CBI20154.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGG8|Y5343_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1;; (*TAIR) AT1G53440.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:19945959-19951562 FORWARD LENGTH=1035;; (*ITAG) Solyc12g014350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5158297-5167281 transcript_region:SL2.40ch12:5158297..5167281- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00008577g0004.1 protein AED:0.37 eAED:0.47 QI:0|0|0|1|1|1|3|0|101 NbS00048603g0005.1 protein AED:0.26 eAED:0.26 QI:663|0.9|0.90|1|0.7|0.72|11|0|500; (*GB) gi|224107249|ref|XP_002314421.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4J2|MPK16_ARATH (e_value=0.0) Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2;; (*TAIR) AT5G19010.1 (e_value=0.0) | Symbols: MPK16 | mitogen-activated protein kinase 16 | chr5:6345096-6347676 REVERSE LENGTH=567;; (*ITAG) Solyc01g080240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71971471-71978931 transcript_region:SL2.40ch01:71971471..71978931+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 16 (AHRD V1 **** D7LYJ6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00022130g0018.1 protein AED:0.09 eAED:0.10 QI:533|0.75|0.66|1|0.75|0.77|9|0|539; (*GB) gi|255558472|ref|XP_002520261.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9CAL8|PEK13_ARATH (e_value=1e-76) Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1;; (*TAIR) AT5G56790.1 (e_value=9e-106) | Symbols: | Protein kinase superfamily protein | chr5:22968610-22971391 FORWARD LENGTH=669;; (*ITAG) Solyc04g063370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54608074-54614389 transcript_region:SL2.40ch04:54608074..54614389+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022130g0014.1 protein AED:0.15 eAED:0.15 QI:507|0.75|0.6|1|0.75|0.6|5|0|391; (*GB) gi|302142727|emb|CBI19930.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LPL4|SKP2A_ARATH (e_value=0.0) F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1;; (*TAIR) AT1G21410.1 (e_value=0.0) | Symbols: SKP2A | F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360;; (*ITAG) Solyc04g063380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54633946-54637333 transcript_region:SL2.40ch04:54633946..54637333+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 ***- B6TAC3_MAIZE); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00022130g0003.1 protein AED:0.22 eAED:0.22 QI:158|0.71|0.66|1|1|1|15|21|810; (*GB) gi|296088557|emb|CBI37548.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2JNP0|FTSH_SYNJB (e_value=2e-75) ATP-dependent zinc metalloprotease FtsH OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ftsH PE=3 SV=1;; (*TAIR) AT5G64580.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr5:25817391-25821465 REVERSE LENGTH=855;; (*ITAG) Solyc04g063360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54590862-54606336 transcript_region:SL2.40ch04:54590862..54606336+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_CYACA); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00033174g0002.1 protein AED:0.17 eAED:0.17 QI:371|0.75|0.8|1|0.5|0.6|5|1341|291; (*GB) gi|225455386|ref|XP_002278061.1| (e_value=2e-97) PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Vitis vinifera];; (*SWP) sp|Q9FK05|PME61_ARATH (e_value=4e-71) Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1;; (*TAIR) AT5G53370.1 (e_value=3e-72) | Symbols: ATPMEPCRF, PMEPCRF | pectin methylesterase PCR fragment F | chr5:21649683-21651530 REVERSE LENGTH=587;; (*ITAG) Solyc06g051960.2.1 (e_value=3e-121) genomic_reference:SL2.40ch06 gene_region:32128328-32131813 transcript_region:SL2.40ch06:32128328..32131813+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9IDR8_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00029708g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|4|55|474; (*GB) gi|255563939|ref|XP_002522969.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=3e-132) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=8e-113) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g064450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00029698g0005.1 protein AED:0.07 eAED:0.07 QI:16|1|0.75|1|0.33|0.25|4|0|346; (*GB) gi|225427360|ref|XP_002279666.1| (e_value=9e-80) PREDICTED: uncharacterized protein LOC100265998 [Vitis vinifera];; (*TAIR) AT1G32740.1 (e_value=2e-46) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:11844883-11846082 FORWARD LENGTH=312;; (*ITAG) Solyc08g077460.2.1 (e_value=4e-129) genomic_reference:SL2.40ch08 gene_region:58545507-58547904 transcript_region:SL2.40ch08:58545507..58547904- go_terms:GO:0008270 functional_description:"S-ribonuclease binding protein SBP1 (Fragment) (AHRD V1 *--- Q9M5Q3_PETHY); contains Interpro domain(s) IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00029698g0007.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|269; (*GB) gi|225443379|ref|XP_002266544.1| (e_value=3e-77) PREDICTED: reticulon-like protein B22 [Vitis vinifera];; (*SWP) sp|Q8GWH5|RTNLT_ARATH (e_value=4e-69) Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2 SV=1;; (*TAIR) AT1G78895.1 (e_value=3e-70) | Symbols: | Reticulon family protein | chr1:29658313-29659866 REVERSE LENGTH=164;; (*ITAG) Solyc08g077470.2.1 (e_value=2e-103) genomic_reference:SL2.40ch08 gene_region:58561402-58563011 transcript_region:SL2.40ch08:58561402..58563011- go_terms:GO:0005783 functional_description:"Reticulon-like protein B22 (AHRD V1 ***- RTNLT_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00013646g0008.1 protein AED:0.01 eAED:0.01 QI:81|1|1|1|0.83|1|7|166|369; (*GB) gi|359492693|ref|XP_002281118.2| (e_value=1e-35) PREDICTED: transcription factor bHLH110-like [Vitis vinifera];; (*SWP) sp|Q9SFZ3|BH110_ARATH (e_value=3e-33) Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2;; (*TAIR) AT1G27660.1 (e_value=2e-34) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9621701-9625666 FORWARD LENGTH=453;; (*ITAG) Solyc02g084880.2.1 (e_value=2e-144) genomic_reference:SL2.40ch02 gene_region:42524468-42528076 transcript_region:SL2.40ch02:42524468..42528076+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00013646g0007.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.66|1|1|3|0|688; (*GB) gi|255561034|ref|XP_002521529.1| (e_value=0.0) Disease resistance protein RGA2, putative [Ricinus communis];; (*SWP) sp|Q38834|R13L4_ARATH (e_value=7e-133) Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2;; (*TAIR) AT3G50950.1 (e_value=6e-134) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc02g084890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42528612-42531164 transcript_region:SL2.40ch02:42528612..42531164- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013646g0006.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|133; (*GB) gi|172051311|gb|ACB70404.1| (e_value=4e-31) CC-NBS-LRR putative disease resistance protein, partial [Solanum melongena];; (*SWP) sp|Q38834|R13L4_ARATH (e_value=4e-19) Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2;; (*TAIR) AT3G50950.1 (e_value=3e-20) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc02g084890.1.1 (e_value=4e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42528612-42531164 transcript_region:SL2.40ch02:42528612..42531164- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00013646g0101.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|140 NbS00013646g0113.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0|1|0.66|0.25|4|0|786 NbS00013646g0102.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|251 NbS00013646g0112.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|1|2|0|143 NbS00052618g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|356554415|ref|XP_003545542.1| (e_value=2e-99) PREDICTED: uncharacterized protein LOC100811524 [Glycine max];; (*TAIR) AT2G24530.1 (e_value=1e-86) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc03g117820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60892138-60893394 transcript_region:SL2.40ch03:60892138..60893394+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00052618g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.66|1|0.5|0.33|3|214|383; (*GB) gi|12229632|sp|O24146.1|4CL2_TOBAC (e_value=1e-179) RecName: Full=4-coumarate--CoA ligase 2; Short=4CL 2; AltName: Full=4-coumaroyl-CoA synthase 2;; (*SWP) sp|O24146|4CL2_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1;; (*TAIR) AT1G51680.3 (e_value=3e-135) | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159080-19161464 REVERSE LENGTH=539;; (*ITAG) Solyc12g042460.1.1 (e_value=1e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43196885-43202646 transcript_region:SL2.40ch12:43196885..43202646+ go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00007024g0005.1 protein AED:0.00 eAED:0.00 QI:109|1|1|1|1|1|2|153|247; (*GB) gi|225439404|ref|XP_002263705.1| (e_value=2e-71) PREDICTED: transcription factor TGA4-like [Vitis vinifera];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=5e-21) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G58330.1 (e_value=3e-44) | Symbols: ZW2 | transcription factor-related | chr1:21641150-21641827 FORWARD LENGTH=225;; (*ITAG) Solyc10g085210.1.1 (e_value=1e-123) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63805656-63807219 transcript_region:SL2.40ch10:63805656..63807219- functional_description:"BZIP family transcription factor (AHRD V1 ***- D7LZU5_ARALY)"; NbS00024536g0001.1 protein AED:0.29 eAED:0.59 QI:0|0|0|0.75|1|1|4|0|390; (*GB) gi|356558507|ref|XP_003547547.1| (e_value=2e-39) PREDICTED: LOW QUALITY PROTEIN: DNA polymerase-like [Glycine max];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=3e-28) DNA polymerase OS=Zea mays PE=3 SV=1;; (*ITAG) Solyc03g013470.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:5876619-5878402 transcript_region:SL2.40ch03:5876619..5878402- go_terms:GO:0006260 functional_description:"DNA polymerase (AHRD V1 *-*- Q6QZN8_DAUCA); contains Interpro domain(s) IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus "; GO:0006260 NbS00024536g0003.1 protein AED:0.31 eAED:0.32 QI:136|0.5|0.66|1|0|0.33|3|0|229; (*GB) gi|188509941|gb|ACD56627.1| (e_value=6e-131) putative ABC transporter [Gossypium raimondii];; (*SWP) sp|Q9C8T1|AB1I_ARATH (e_value=1e-131) ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1;; (*TAIR) AT1G63270.1 (e_value=9e-133) | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229;; (*ITAG) Solyc12g010220.1.1 (e_value=9e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3340222-3340911 transcript_region:SL2.40ch12:3340222..3340911+ go_terms:GO:0030288,GO:0017111,GO:0016887 functional_description:"Cytochrome c biogenesis ATP-binding export protein ccmA-like (AHRD V1 ***- B6U3M9_MAIZE); contains Interpro domain(s) IPR005895 ABC transporter, haem export, CcmA "; GO:0030288,GO:0017111,GO:0016887 NbS00024536g0009.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|234; (*GB) gi|296090575|emb|CBI40938.3| (e_value=2e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZUH1|Y2424_ARATH (e_value=3e-77) BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1;; (*TAIR) AT2G24240.1 (e_value=3e-78) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr2:10310838-10312163 FORWARD LENGTH=441;; (*ITAG) Solyc07g005520.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:408207-409532 transcript_region:SL2.40ch07:408207..409532- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7LHH7_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00024536g0010.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|0|0|2|0|123; (*GB) gi|356500649|ref|XP_003519144.1| (e_value=8e-42) PREDICTED: BTB/POZ domain-containing protein At2g24240-like [Glycine max];; (*SWP) sp|O65555|Y4094_ARATH (e_value=3e-40) BTB/POZ domain-containing protein At4g30940 OS=Arabidopsis thaliana GN=At4g30940 PE=2 SV=1;; (*TAIR) AT4G30940.1 (e_value=2e-41) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr4:15055149-15056474 FORWARD LENGTH=441;; (*ITAG) Solyc12g010100.1.1 (e_value=2e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3230800-3232131 transcript_region:SL2.40ch12:3230800..3232131+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 *-*- Q54EU5_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00022316g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|324; (*GB) gi|55824323|gb|AAV66309.1| (e_value=3e-67) acyltransferase [Capsicum chinense];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=2e-30) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=3e-31) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc08g014490.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:4520981-4522291 transcript_region:SL2.40ch08:4520981..4522291- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00041280g0003.1 protein AED:0.00 eAED:0.00 QI:189|1|1|1|0.5|0.66|3|459|78; (*GB) gi|255582868|ref|XP_002532206.1| (e_value=2e-36) NOI, putative [Ricinus communis];; (*TAIR) AT2G04410.1 (e_value=1e-35) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73;; (*ITAG) Solyc07g045340.2.1 (e_value=3e-43) genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00030751g0003.1 protein AED:0.26 eAED:0.27 QI:145|1|1|1|0.6|0.66|6|440|317; (*GB) gi|225461547|ref|XP_002282697.1| (e_value=1e-152) PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Vitis vinifera];; (*SWP) sp|Q8W566|Y3514_ARATH (e_value=2e-133) Uncharacterized exonuclease domain-containing protein At3g15140 OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1;; (*TAIR) AT3G15140.1 (e_value=2e-134) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337;; (*ITAG) Solyc07g062750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62667046-62670973 transcript_region:SL2.40ch07:62667046..62670973+ go_terms:GO:0005515 functional_description:"ERI1 exoribonuclease 3 (AHRD V1 **-- ERI3_BOVIN); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0005515 NbS00026807g0002.1 protein AED:0.01 eAED:0.01 QI:59|0|0.5|1|0|0.5|2|46|143; (*GB) gi|300490501|gb|ADK22842.1| (e_value=2e-32) Sal k 4 [Salsola kali];; (*SWP) sp|O49813|OLEE1_BETPN (e_value=3e-31) Olee1-like protein OS=Betula pendula PE=2 SV=1;; (*TAIR) AT4G18596.1 (e_value=5e-28) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr4:10239114-10239728 FORWARD LENGTH=172;; (*ITAG) Solyc03g006170.2.1 (e_value=3e-58) genomic_reference:SL2.40ch03 gene_region:824935-826158 transcript_region:SL2.40ch03:824935..826158- functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00026807g0004.1 protein AED:0.31 eAED:0.76 QI:0|0|0|0.2|1|1|5|0|486; (*GB) gi|225443816|ref|XP_002266602.1| (e_value=4e-88) PREDICTED: uncharacterized protein LOC100261683 [Vitis vinifera];; (*TAIR) AT4G35540.1 (e_value=3e-51) | Symbols: | zinc ion binding;transcription regulators | chr4:16873939-16875522 FORWARD LENGTH=527;; (*ITAG) Solyc05g023840.1.1 (e_value=9e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29507148-29507552 transcript_region:SL2.40ch05:29507148..29507552- functional_description:"Zinc ion binding protein (AHRD V1 ***- D7MCZ5_ARALY)"; NbS00039742g0005.1 protein AED:0.17 eAED:0.17 QI:448|1|1|1|0.8|0.83|6|292|351; (*GB) gi|297738494|emb|CBI27739.3| (e_value=7e-117) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G33140.1 (e_value=1e-105) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:15981648-15984135 FORWARD LENGTH=353;; (*ITAG) Solyc07g017700.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:7742456-7743612 transcript_region:SL2.40ch07:7742456..7743612- functional_description:"Uncharacterized conserved protein (AHRD V1 ***- A5CYZ3_PELTS)"; NbS00032383g0004.1 protein AED:0.40 eAED:0.59 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|224055753|ref|XP_002298636.1| (e_value=1e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27030.1 (e_value=2e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9972508-9974225 REVERSE LENGTH=142;; (*ITAG) Solyc02g094220.1.1 (e_value=3e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49395545-49395754 transcript_region:SL2.40ch02:49395545..49395754+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00032383g0005.1 protein AED:0.59 eAED:0.70 QI:0|0|0|0.5|1|1|4|0|185; (*GB) gi|255547686|ref|XP_002514900.1| (e_value=6e-55) nuclear transport factor, putative [Ricinus communis];; (*SWP) sp|Q9C7F5|NTF2_ARATH (e_value=6e-55) Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1;; (*TAIR) AT1G27970.1 (e_value=4e-56) | Symbols: NTF2B | nuclear transport factor 2B | chr1:9746921-9747787 FORWARD LENGTH=126;; (*ITAG) Solyc02g094200.2.1 (e_value=2e-61) genomic_reference:SL2.40ch02 gene_region:49383545-49389074 transcript_region:SL2.40ch02:49383545..49389074+ go_terms:GO:0008320,GO:0008536 functional_description:"Nuclear transport factor 2 (AHRD V1 ***- B3TLR5_ELAGV); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0008320,GO:0008536 NbS00032383g0001.1 protein AED:0.20 eAED:0.20 QI:423|0|0.5|1|0|0.5|2|278|68 NbS00011709g0005.1 protein AED:0.14 eAED:0.14 QI:207|1|1|1|1|1|2|200|189; (*GB) gi|255550818|ref|XP_002516457.1| (e_value=6e-108) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80992|PYL2_ARATH (e_value=3e-94) Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1;; (*TAIR) AT2G26040.1 (e_value=2e-95) | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:11094832-11095404 REVERSE LENGTH=190;; (*ITAG) Solyc12g095970.1.1 (e_value=4e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63409947-63411151 transcript_region:SL2.40ch12:63409947..63411151- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL2 (AHRD V1 **-* PYL2_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00061309g0003.1 protein AED:0.11 eAED:0.11 QI:193|0.88|0.9|1|0.88|0.8|10|179|374; (*GB) gi|225459340|ref|XP_002284201.1| (e_value=4e-169) PREDICTED: trehalose-phosphate phosphatase [Vitis vinifera];; (*SWP) sp|Q5HZ05|TPPJ_ARATH (e_value=3e-152) Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1;; (*TAIR) AT5G65140.1 (e_value=2e-153) | Symbols: TPPJ | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:26019878-26022077 REVERSE LENGTH=370;; (*ITAG) Solyc04g072920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57502409-57504604 transcript_region:SL2.40ch04:57502409..57504604+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose-6-phosphate phosphatase (AHRD V1 ***- D7KV74_ARALY); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00042948g0013.1 protein AED:0.04 eAED:0.05 QI:0|0.88|0.8|1|0.55|0.4|10|312|1001; (*GB) gi|225443381|ref|XP_002266669.1| (e_value=0.0) PREDICTED: pumilio homolog 5 [Vitis vinifera];; (*SWP) sp|Q9LJX4|PUM5_ARATH (e_value=0.0) Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2;; (*TAIR) AT3G20250.1 (e_value=0.0) | Symbols: APUM5, PUM5 | pumilio 5 | chr3:7059098-7062660 REVERSE LENGTH=961;; (*ITAG) Solyc03g123980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64720811-64728947 transcript_region:SL2.40ch03:64720811..64728947+ go_terms:GO:0003723,GO:0005488 functional_description:"Pumilio-like protein (AHRD V1 ***- Q9SVZ7_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003723,GO:0005488 NbS00042948g0012.1 protein AED:0.30 eAED:0.40 QI:0|0.8|0.5|1|0.6|0.5|6|332|215; (*GB) gi|147854312|emb|CAN79114.1| (e_value=5e-88) hypothetical protein VITISV_007010 [Vitis vinifera];; (*TAIR) AT3G20270.3 (e_value=1e-62) | Symbols: | lipid-binding serum glycoprotein family protein | chr3:7067779-7070866 FORWARD LENGTH=722;; (*ITAG) Solyc03g123970.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64716187-64717511 transcript_region:SL2.40ch03:64716187..64717511+ functional_description:"Lipid-binding serum glycoprotein family protein (AHRD V1 *-*- D7LAX8_ARALY)"; NbS00042948g0011.1 protein AED:0.34 eAED:0.34 QI:300|1|0.8|1|0.75|0.8|5|0|363; (*GB) gi|225443377|ref|XP_002266396.1| (e_value=0.0) PREDICTED: protein brittle-1, chloroplastic/amyloplastic isoform 1 [Vitis vinifera];; (*SWP) sp|P29518|BT1_MAIZE (e_value=2e-51) Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1;; (*TAIR) AT3G20240.1 (e_value=3e-158) | Symbols: | Mitochondrial substrate carrier family protein | chr3:7057192-7058716 FORWARD LENGTH=348;; (*ITAG) Solyc03g123990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64729997-64734589 transcript_region:SL2.40ch03:64729997..64734589- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P8G6_COCP7); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbC24487003g0002.1 protein AED:0.32 eAED:0.32 QI:55|1|0.5|1|1|0.5|2|0|88 NbS00042927g0003.1 protein AED:0.03 eAED:0.03 QI:269|0.6|0.66|1|0|0.16|6|187|349; (*GB) gi|359474536|ref|XP_002278005.2| (e_value=5e-82) PREDICTED: probable transcription factor KAN2-like [Vitis vinifera];; (*SWP) sp|Q9C616|KAN2_ARATH (e_value=3e-44) Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1;; (*TAIR) AT1G32240.1 (e_value=2e-45) | Symbols: KAN2 | Homeodomain-like superfamily protein | chr1:11625882-11630355 REVERSE LENGTH=388;; (*ITAG) Solyc08g005260.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:174641-179270 transcript_region:SL2.40ch08:174641..179270- go_terms:GO:0045449 functional_description:"Myb family transcription factor-like protein (AHRD V1 *--- Q84UP8_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00041620g0001.1 protein AED:0.40 eAED:0.40 QI:194|0.76|0.64|1|0.84|0.85|14|0|372; (*GB) gi|255545822|ref|XP_002513971.1| (e_value=0.0) queuine tRNA-ribosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q28HC6|TGT_XENTR (e_value=4e-133) Queuine tRNA-ribosyltransferase OS=Xenopus tropicalis GN=qtrt1 PE=2 SV=2;; (*ITAG) Solyc04g074710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58224199-58231405 transcript_region:SL2.40ch04:58224199..58231405- go_terms:GO:0008479,GO:0005515 functional_description:"Queuine tRNA-ribosyltransferase (AHRD V1 **** B9RJQ2_RICCO); contains Interpro domain(s) IPR004803 Queuine tRNA-ribosyltransferase "; GO:0008479,GO:0005515 NbS00003022g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0|0|3|0|192; (*GB) gi|359496288|ref|XP_002271639.2| (e_value=4e-29) PREDICTED: uncharacterized protein LOC100242640 isoform 2 [Vitis vinifera];; (*TAIR) AT3G26510.4 (e_value=6e-25) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc06g071750.2.1 (e_value=1e-71) genomic_reference:SL2.40ch06 gene_region:40585640-40586725 transcript_region:SL2.40ch06:40585640..40586725+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00003022g0005.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.5|0.75|0.66|0.5|4|0|127; (*GB) gi|297745095|emb|CBI38934.3| (e_value=1e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G17250.1 (e_value=8e-38) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=1e-58) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00003022g0002.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|356513423|ref|XP_003525413.1| (e_value=7e-35) PREDICTED: uncharacterized protein LOC100805083 [Glycine max];; (*TAIR) AT3G48660.1 (e_value=3e-35) | Symbols: | Protein of unknown function (DUF 3339) | chr3:18029659-18030133 FORWARD LENGTH=89;; (*ITAG) Solyc06g072070.1.1 (e_value=1e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40805954-40806163 transcript_region:SL2.40ch06:40805954..40806163+ functional_description:"Os02g0508100 protein (Fragment) (AHRD V1 ***- Q0E0Z9_ORYSJ)"; NbS00003022g0105.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.84|0.85|14|373|550 NbS00003022g0103.1 protein AED:0.65 eAED:0.68 QI:0|0|0|0.33|1|1|3|0|80 NbS00020203g0002.1 protein AED:0.08 eAED:0.19 QI:0|0.5|0|1|1|1|3|0|531; (*GB) gi|255547590|ref|XP_002514852.1| (e_value=8e-116) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9FG77|WRKY2_ARATH (e_value=3e-76) Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1;; (*TAIR) AT5G56270.1 (e_value=2e-77) | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein 2 | chr5:22780816-22783137 FORWARD LENGTH=687;; (*ITAG) Solyc04g056360.2.1 (e_value=6e-130) genomic_reference:SL2.40ch04 gene_region:53281612-53283583 transcript_region:SL2.40ch04:53281612..53283583- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 78 (AHRD V1 *-** Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00029548g0007.1 protein AED:0.39 eAED:0.39 QI:88|0.33|0.75|0.75|0.66|0.75|4|0|66; (*GB) gi|224111908|ref|XP_002316020.1| (e_value=2e-16) predicted protein [Populus trichocarpa]; NbS00029548g0002.1 protein AED:0.30 eAED:0.83 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|255556314|ref|XP_002519191.1| (e_value=1e-101) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LSQ2|PP239_ARATH (e_value=5e-94) Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1;; (*TAIR) AT3G16890.1 (e_value=4e-95) | Symbols: PPR40 | pentatricopeptide (PPR) domain protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659;; (*ITAG) Solyc01g060250.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:62785077-62787295 transcript_region:SL2.40ch01:62785077..62787295+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037141g0012.1 protein AED:0.01 eAED:0.05 QI:0|1|0|1|1|1|2|0|490; (*GB) gi|125555316|gb|EAZ00922.1| (e_value=4e-77) hypothetical protein OsI_22951 [Oryza sativa Indica Group];; (*SWP) sp|Q9FEQ8|PER2_MAIZE (e_value=2e-71) Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1;; (*TAIR) AT5G17820.1 (e_value=3e-72) | Symbols: | Peroxidase superfamily protein | chr5:5888195-5890101 REVERSE LENGTH=313;; (*ITAG) Solyc05g013350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6440494-6442318 transcript_region:SL2.40ch05:6440494..6442318+ go_terms:GO:0004601 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00037141g0011.1 protein AED:0.10 eAED:0.10 QI:0|1|0.85|1|1|1|7|0|311; (*GB) gi|255573993|ref|XP_002527914.1| (e_value=8e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G10710.2 (e_value=1e-27) | Symbols: PHS1 | poor homologous synapsis 1 | chr1:3558423-3560407 FORWARD LENGTH=349;; (*ITAG) Solyc05g013360.2.1 (e_value=2e-150) genomic_reference:SL2.40ch05 gene_region:6442824-6446263 transcript_region:SL2.40ch05:6442824..6446263- functional_description:"Poor homologous synapsis 1 protein (AHRD V1 ***- Q6W2J0_MAIZE)"; NbS00037141g0013.1 protein AED:0.30 eAED:0.30 QI:281|0.8|0.90|1|0.7|0.72|11|330|391; (*GB) gi|225470599|ref|XP_002274463.1| (e_value=0.0) PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|P35602|AP1M_CAEEL (e_value=3e-169) AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2;; (*TAIR) AT1G60780.1 (e_value=0.0) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc05g013340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6428106-6437810 transcript_region:SL2.40ch05:6428106..6437810- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu-1 (AHRD V1 ***- B5X228_SALSA); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00011644g0009.1 protein AED:0.01 eAED:0.01 QI:528|1|1|1|1|1|5|321|941; (*GB) gi|225426014|ref|XP_002271107.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243335 [Vitis vinifera];; (*TAIR) AT2G46380.1 (e_value=1e-93) | Symbols: | Protein of unknown function (DUF3133) | chr2:19039377-19042171 FORWARD LENGTH=768;; (*ITAG) Solyc08g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62121368-62126730 transcript_region:SL2.40ch08:62121368..62126730+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00011644g0011.1 protein AED:0.01 eAED:0.01 QI:246|1|1|1|1|1|3|469|433; (*GB) gi|225426012|ref|XP_002273303.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265666 [Vitis vinifera];; (*TAIR) AT4G11090.1 (e_value=2e-170) | Symbols: TBL23 | TRICHOME BIREFRINGENCE-LIKE 23 | chr4:6764645-6766221 REVERSE LENGTH=432;; (*ITAG) Solyc08g082060.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62131773-62136414 transcript_region:SL2.40ch08:62131773..62136414+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00011644g0010.1 protein AED:0.07 eAED:0.07 QI:65|0.62|0.66|1|1|1|9|0|549; (*GB) gi|255537735|ref|XP_002509934.1| (e_value=2e-118) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SUP7|HMGB6_ARATH (e_value=1e-94) High mobility group B protein 6 OS=Arabidopsis thaliana GN=HMGB6 PE=2 SV=1;; (*TAIR) AT4G23800.2 (e_value=1e-96) | Symbols: | HMG (high mobility group) box protein | chr4:12390228-12392516 FORWARD LENGTH=450;; (*ITAG) Solyc08g082070.2.1 (e_value=7e-172) genomic_reference:SL2.40ch08 gene_region:62136850-62139918 transcript_region:SL2.40ch08:62136850..62139918+ go_terms:GO:0005634 functional_description:"TOX high mobility group box family member 4 (AHRD V1 *--- TOX4_PONAB); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0005634 NbS00011644g0012.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|210; (*GB) gi|224099647|ref|XP_002311564.1| (e_value=1e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5REY7|UBXN7_PONAB (e_value=1e-28) UBX domain-containing protein 7 OS=Pongo abelii GN=UBXN7 PE=2 SV=2;; (*TAIR) AT1G14570.4 (e_value=2e-52) | Symbols: | UBX domain-containing protein | chr1:4983770-4987192 FORWARD LENGTH=447;; (*ITAG) Solyc08g082050.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62128612-62129741 transcript_region:SL2.40ch08:62128612..62129741+ functional_description:"UBX domain-containing protein (AHRD V1 ***- D7KBM2_ARALY); contains Interpro domain(s) IPR006577 UAS "; NbS00047660g0003.1 protein AED:0.24 eAED:0.24 QI:225|0.6|0.66|1|0.6|1|6|0|251; (*GB) gi|147807582|emb|CAN66319.1| (e_value=1e-120) hypothetical protein VITISV_040623 [Vitis vinifera];; (*SWP) sp|Q9LZ98|AB20I_ARATH (e_value=2e-106) ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1;; (*TAIR) AT5G02270.1 (e_value=1e-107) | Symbols: ATNAP9, NAP9 | non-intrinsic ABC protein 9 | chr5:467269-469041 REVERSE LENGTH=328;; (*ITAG) Solyc01g100850.2.1 (e_value=1e-131) genomic_reference:SL2.40ch01 gene_region:82520729-82524185 transcript_region:SL2.40ch01:82520729..82524185+ go_terms:GO:0017111,GO:0016887 functional_description:"ABC transporter ATP-binding protein (AHRD V1 ***- Q88ZT3_LACPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00008679g0003.1 protein AED:0.26 eAED:0.28 QI:0|0.66|0.5|1|1|1|4|0|330; (*GB) gi|14971013|dbj|BAB62108.1| (e_value=0.0) GDP-D-mannose pyrophosphorylase [Nicotiana tabacum];; (*SWP) sp|O22287|GMPP1_ARATH (e_value=0.0) Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1;; (*TAIR) AT2G39770.2 (e_value=0.0) | Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361;; (*ITAG) Solyc03g096730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52526975-52529237 transcript_region:SL2.40ch03:52526975..52529237+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 1"; GO:0004475,GO:0051015 NbS00027433g0006.1 protein AED:0.14 eAED:0.14 QI:145|1|1|1|1|1|3|205|158; (*ITAG) Solyc06g083250.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:45034667-45036788 transcript_region:SL2.40ch06:45034667..45036788+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027433g0009.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.8|0.66|6|356|274; (*GB) gi|77745477|gb|ABB02637.1| (e_value=2e-152) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=2e-28) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1;; (*TAIR) AT3G25160.1 (e_value=2e-123) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc06g083270.2.1 (e_value=2e-178) genomic_reference:SL2.40ch06 gene_region:45045594-45049094 transcript_region:SL2.40ch06:45045594..45049094+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00030855g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|255546007|ref|XP_002514063.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G06520.1 (e_value=1e-23) | Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116;; (*ITAG) Solyc05g025600.1.1 (e_value=3e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00030855g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.88|0.7|1|1|1|10|386|312; (*GB) gi|350537177|ref|NP_001234027.1| (e_value=0.0) spe4 protein [Solanum lycopersicum];; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=4e-160) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.1 (e_value=3e-161) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591091 REVERSE LENGTH=339;; (*ITAG) Solyc08g061970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47399954-47404859 transcript_region:SL2.40ch08:47399954..47404859+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00030855g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|4|0|89 NbS00003041g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|170; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00003041g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|485; (*GB) gi|133711801|gb|ABO36619.1| (e_value=0.0) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=4e-28) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50150.1 (e_value=5e-40) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18595809-18597551 REVERSE LENGTH=509;; (*ITAG) Solyc10g079230.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00048866g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|341; (*GB) gi|225436055|ref|XP_002276040.1| (e_value=2e-50) PREDICTED: uncharacterized protein LOC100263294 [Vitis vinifera];; (*SWP) sp|Q9BX46|RBM24_HUMAN (e_value=2e-13) RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1;; (*TAIR) AT3G56860.5 (e_value=8e-44) | Symbols: UBA2A | UBP1-associated protein 2A | chr3:21050708-21052144 REVERSE LENGTH=478;; (*ITAG) Solyc10g081330.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61752173-61754621 transcript_region:SL2.40ch10:61752173..61754621- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 *--- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00015491g0001.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|255548549|ref|XP_002515331.1| (e_value=1e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47485.1 (e_value=1e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:19486004-19486429 FORWARD LENGTH=141;; (*ITAG) Solyc09g075570.1.1 (e_value=2e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:62765708-62766136 transcript_region:SL2.40ch09:62765708..62766136- functional_description:"Binding protein (AHRD V1 ***- D7LGN5_ARALY)"; NbS00015491g0108.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|0|0|3|0|119 NbS00029836g0005.1 protein AED:0.08 eAED:0.08 QI:254|0.9|0.90|1|0.8|0.90|11|138|426; (*GB) gi|350537521|ref|NP_001233786.1| (e_value=0.0) cyclin B2 [Solanum lycopersicum];; (*SWP) sp|P46277|CCNB1_MEDSV (e_value=2e-170) G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1;; (*TAIR) AT1G20610.1 (e_value=1e-134) | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429;; (*ITAG) Solyc03g032190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00054358g0003.1 protein AED:0.12 eAED:0.14 QI:177|0.91|0.84|1|0.91|0.84|13|0|563; (*GB) gi|359489241|ref|XP_003633899.1| (e_value=0.0) PREDICTED: dynamin-related protein 1E [Vitis vinifera];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=0.0) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=0.0) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc10g062160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:55548053-55555105 transcript_region:SL2.40ch10:55548053..55555105- go_terms:GO:0003924 functional_description:"Dynamin like protein (AHRD V1 ***- D3BTL7_POLPA); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00053587g0007.1 protein AED:0.04 eAED:0.04 QI:125|0.8|0.66|0.83|0.4|0.33|6|0|190; (*GB) gi|225464011|ref|XP_002265223.1| (e_value=5e-131) PREDICTED: UPF0468 protein CG5343 [Vitis vinifera];; (*SWP) sp|Q9VKV8|U0468_DROME (e_value=4e-123) UPF0468 protein CG5343 OS=Drosophila melanogaster GN=CG5343 PE=1 SV=1;; (*TAIR) AT3G12300.1 (e_value=3e-129) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). | chr3:3921787-3923092 REVERSE LENGTH=190;; (*ITAG) Solyc01g096610.2.1 (e_value=2e-140) genomic_reference:SL2.40ch01 gene_region:79443444-79447556 transcript_region:SL2.40ch01:79443444..79447556+ go_terms:GO:0005515,GO:0003700 functional_description:"UPF0468 protein C16orf80 homolog (AHRD V1 ***- C1BNI4_9MAXI); contains Interpro domain(s) IPR007714 Protein of unknown function DUF667 "; GO:0005515,GO:0003700 NbS00014910g0010.1 protein AED:0.01 eAED:0.01 QI:186|1|1|1|1|1|2|151|197; (*GB) gi|224120938|ref|XP_002330863.1| (e_value=1e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7F7|UGPI5_ARATH (e_value=9e-12) Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis thaliana GN=At1g27950 PE=1 SV=1;; (*TAIR) AT2G44300.1 (e_value=2e-57) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc01g073680.2.1 (e_value=2e-97) genomic_reference:SL2.40ch01 gene_region:70294954-70296553 transcript_region:SL2.40ch01:70294954..70296553- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- C6TMC6_SOYBN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00014910g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.81|1|1|1|11|331|423; (*GB) gi|359487445|ref|XP_002270525.2| (e_value=9e-180) PREDICTED: uncharacterized MFS-type transporter C19orf28-like [Vitis vinifera];; (*SWP) sp|Q6NUT3|MFS12_HUMAN (e_value=3e-41) Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=2 SV=2;; (*TAIR) AT2G44280.2 (e_value=6e-160) | Symbols: | Major facilitator superfamily protein | chr2:18301563-18303927 REVERSE LENGTH=462;; (*ITAG) Solyc01g073660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70277708-70286071 transcript_region:SL2.40ch01:70277708..70286071- functional_description:"Uncharacterized MFS-type transporter C19orf28 (AHRD V1 **-- CS028_HUMAN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00014910g0005.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|94 NbS00026184g0007.1 protein AED:0.03 eAED:0.03 QI:835|1|0.87|1|1|1|8|323|482; (*GB) gi|225446219|ref|XP_002263443.1| (e_value=0.0) PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82730|MGDG2_ARATH (e_value=0.0) Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=MGD2 PE=1 SV=1;; (*TAIR) AT5G20410.1 (e_value=0.0) | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol synthase 2 | chr5:6896765-6898581 FORWARD LENGTH=468;; (*ITAG) Solyc07g007620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2276431-2280276 transcript_region:SL2.40ch07:2276431..2280276+ go_terms:GO:0035250 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-- C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0035250 NbS00026184g0010.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.75|0.75|0.33|0.75|4|568|191; (*GB) gi|225446221|ref|XP_002264212.1| (e_value=1e-112) PREDICTED: actin-related protein 2/3 complex subunit 3-like [Vitis vinifera];; (*SWP) sp|Q9JM76|ARPC3_MOUSE (e_value=5e-52) Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3;; (*TAIR) AT1G60430.2 (e_value=2e-113) | Symbols: ARPC3 | actin-related protein C3 | chr1:22264797-22265682 REVERSE LENGTH=174;; (*ITAG) Solyc07g007630.2.1 (e_value=4e-121) genomic_reference:SL2.40ch07 gene_region:2284472-2288609 transcript_region:SL2.40ch07:2284472..2288609+ go_terms:GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 3 (AHRD V1 **** B6U3I7_MAIZE); contains Interpro domain(s) IPR007204 ARP2/3 complex, p21-Arc subunit "; GO:0051015 NbS00004803g0004.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|373; (*GB) gi|225451426|ref|XP_002273717.1| (e_value=5e-170) PREDICTED: F-box/kelch-repeat protein At3g27150-like [Vitis vinifera];; (*SWP) sp|Q9LI89|FBK70_ARATH (e_value=1e-120) F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1;; (*TAIR) AT3G27150.1 (e_value=8e-122) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:10009692-10010960 REVERSE LENGTH=422;; (*ITAG) Solyc07g009410.2.1 (e_value=2e-155) genomic_reference:SL2.40ch07 gene_region:4479008-4481086 transcript_region:SL2.40ch07:4479008..4481086+ go_terms:GO:0005529 functional_description:"Kelch-like protein 7 (AHRD V1 *--- KLHL7_CHICK); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005529 NbS00016635g0008.1 protein AED:0.89 eAED:0.89 QI:38|0|0.11|0.11|1|1|9|0|244; (*GB) gi|356573785|ref|XP_003555036.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100797980 [Glycine max]; NbS00016635g0009.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|255541166|ref|XP_002511647.1| (e_value=1e-19) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc01g090790.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:76228389-76233064 transcript_region:SL2.40ch01:76228389..76233064- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00016635g0010.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0|2|0|302; (*GB) gi|224129950|ref|XP_002320711.1| (e_value=2e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZ38|UNE10_ARATH (e_value=2e-16) Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1;; (*TAIR) AT4G00050.1 (e_value=2e-17) | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17863-19848 FORWARD LENGTH=399;; (*ITAG) Solyc01g090790.2.1 (e_value=6e-45) genomic_reference:SL2.40ch01 gene_region:76228389-76233064 transcript_region:SL2.40ch01:76228389..76233064- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00016582g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.55|0.5|1|0.44|0.5|10|355|726; (*GB) gi|85068668|gb|ABC69414.1| (e_value=0.0) CYP72A57 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g055350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60736172-60738580 transcript_region:SL2.40ch07:60736172..60738580- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00016582g0007.1 protein AED:0.25 eAED:0.51 QI:0|0|0|1|0.33|0.25|4|0|233; (*GB) gi|283837099|emb|CBH19894.1| (e_value=5e-32) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=1e-15) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33260.2 (e_value=2e-25) | Symbols: CDC20.2 | Transducin family protein / WD-40 repeat family protein | chr4:16041195-16043180 REVERSE LENGTH=441;; (*ITAG) Solyc08g005420.2.1 (e_value=9e-35) genomic_reference:SL2.40ch08 gene_region:313072-316046 transcript_region:SL2.40ch08:313072..316046+ go_terms:GO:0004871 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004871 NbS00016582g0008.1 protein AED:0.56 eAED:0.72 QI:0|0|0|0.5|0|0.25|4|0|151; (*GB) gi|85068668|gb|ABC69414.1| (e_value=3e-31) CYP72A57 [Nicotiana tabacum];; (*SWP) sp|O48786|C734A_ARATH (e_value=8e-17) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT3G14680.1 (e_value=5e-24) | Symbols: CYP72A14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | chr3:4934478-4936462 FORWARD LENGTH=512;; (*ITAG) Solyc07g055350.2.1 (e_value=4e-34) genomic_reference:SL2.40ch07 gene_region:60736172-60738580 transcript_region:SL2.40ch07:60736172..60738580- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032552g0002.1 protein AED:0.13 eAED:0.24 QI:0|0|0|0.75|0.33|0.25|4|0|151; (*GB) gi|7435385|pir||S46529 (e_value=3e-57) polygalacturonase (EC 3.2.1.15) precursor (clone pC27.W) - common tobacco (fragment);; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=1e-58) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G14040.1 (e_value=2e-41) | Symbols: | Pectin lyase-like superfamily protein | chr3:4648607-4650226 REVERSE LENGTH=445;; (*ITAG) Solyc07g044870.2.1 (e_value=1e-62) genomic_reference:SL2.40ch07 gene_region:55248946-55251738 transcript_region:SL2.40ch07:55248946..55251738+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00031362g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|225441133|ref|XP_002265852.1| (e_value=6e-98) PREDICTED: thaumatin-like protein 1 [Vitis vinifera];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=4e-90) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G38670.2 (e_value=2e-81) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18069856-18071227 REVERSE LENGTH=280;; (*ITAG) Solyc07g017970.1.1 (e_value=1e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:8697170-8699576 transcript_region:SL2.40ch07:8697170..8699576- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- C1K3P2_PYRPY); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00020235g0006.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|195; (*GB) gi|356535069|ref|XP_003536071.1| (e_value=7e-64) PREDICTED: WD repeat domain phosphoinositide-interacting protein 3-like [Glycine max];; (*SWP) sp|Q640T2|WIPI3_XENTR (e_value=3e-14) WD repeat domain phosphoinositide-interacting protein 3 OS=Xenopus tropicalis GN=wdr45l PE=2 SV=1;; (*TAIR) AT3G62770.3 (e_value=7e-59) | Symbols: AtATG18a | Transducin/WD40 repeat-like superfamily protein | chr3:23219091-23221110 REVERSE LENGTH=396;; (*ITAG) Solyc01g099400.2.1 (e_value=7e-69) genomic_reference:SL2.40ch01 gene_region:81429273-81435009 transcript_region:SL2.40ch01:81429273..81435009+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0032266 NbS00020235g0008.1 protein AED:0.06 eAED:0.06 QI:118|1|1|1|1|1|2|157|148; (*GB) gi|27529852|dbj|BAC53941.1| (e_value=7e-58) H2A histone [Nicotiana tabacum];; (*SWP) sp|P25469|H2A1_SOLLC (e_value=3e-53) Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G27670.1 (e_value=2e-50) | Symbols: HTA7 | histone H2A 7 | chr5:9792807-9793365 REVERSE LENGTH=150;; (*ITAG) Solyc01g099410.2.1 (e_value=2e-54) genomic_reference:SL2.40ch01 gene_region:81438054-81439018 transcript_region:SL2.40ch01:81438054..81439018- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- Q8H0G7_TOBAC); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00027296g0009.1 protein AED:0.07 eAED:0.07 QI:20|1|1|1|0.2|0.16|6|676|86; (*ITAG) Solyc04g010020.2.1 (e_value=5e-16) genomic_reference:SL2.40ch04 gene_region:3333448-3338309 transcript_region:SL2.40ch04:3333448..3338309+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- D3TPM8_GLOMM); contains Interpro domain(s) IPR015464 RNA recognition motif-related "; GO:0003676,GO:0000166 NbS00027296g0005.1 protein AED:0.18 eAED:0.18 QI:0|1|0.83|1|1|1|6|0|244; (*GB) gi|302143626|emb|CBI22379.3| (e_value=2e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6AXT7|RBM42_RAT (e_value=9e-48) RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1;; (*TAIR) AT3G04500.1 (e_value=4e-94) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:1212065-1213795 REVERSE LENGTH=245;; (*ITAG) Solyc04g010020.2.1 (e_value=1e-108) genomic_reference:SL2.40ch04 gene_region:3333448-3338309 transcript_region:SL2.40ch04:3333448..3338309+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- D3TPM8_GLOMM); contains Interpro domain(s) IPR015464 RNA recognition motif-related "; GO:0003676,GO:0000166 NbS00040522g0001.1 protein AED:0.36 eAED:0.42 QI:0|0|0|1|1|1|2|0|229; (*GB) gi|57013880|ref|YP_173354.1| (e_value=3e-117) maturase-related protein [Nicotiana tabacum];; (*SWP) sp|P0A3U1|LTRA_LACLM (e_value=7e-22) Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1;; (*ITAG) ATMG00520.1 (e_value=3e-106) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=2e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00040522g0004.1 protein AED:0.64 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|255595575|ref|XP_002536345.1| (e_value=6e-49) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g045430.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37811629-37814500 transcript_region:SL2.40ch11:37811629..37814500- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00040522g0005.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0|2|0|104; (*GB) gi|94502669|ref|YP_588424.1| (e_value=1e-27) hypothetical protein ZeamMp180 [Zea mays subsp. mays];; (*ITAG) Solyc11g056320.1.1 (e_value=4e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43097712-43098062 transcript_region:SL2.40ch11:43097712..43098062- functional_description:"Unknown Protein (AHRD V1)"; NbS00006885g0109.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|1058 NbS00018981g0019.1 protein AED:0.21 eAED:0.34 QI:0|0|0|1|0|0.25|4|0|295; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-63) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g054620.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:52016680-52020322 transcript_region:SL2.40ch04:52016680..52020322+ go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00018981g0017.1 protein AED:0.21 eAED:0.21 QI:204|1|1|1|0.88|0.8|10|430|278; (*GB) gi|356504288|ref|XP_003520929.1| (e_value=1e-172) PREDICTED: NADH-cytochrome b5 reductase 1-like [Glycine max];; (*SWP) sp|Q4PGW7|NCB5R_USTMA (e_value=1e-90) NADH-cytochrome b5 reductase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CBR1 PE=3 SV=1;; (*TAIR) AT5G17770.1 (e_value=1e-172) | Symbols: ATCBR, CBR1, CBR | NADH:cytochrome B5 reductase 1 | chr5:5864543-5866495 REVERSE LENGTH=281;; (*ITAG) Solyc10g081440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61822969-61825835 transcript_region:SL2.40ch10:61822969..61825835- go_terms:GO:0055114 functional_description:"NADH cytochrome b5 reductase (AHRD V1 ***- Q5PY86_VERFO); contains Interpro domain(s) IPR008333 Oxidoreductase FAD-binding region "; GO:0055114 NbS00018981g0018.1 protein AED:0.22 eAED:0.22 QI:0|1|0.92|1|0.84|0.85|14|442|649; (*GB) gi|255569446|ref|XP_002525690.1| (e_value=0.0) cationic amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9ASS7|CAAT2_ARATH (e_value=0.0) Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1;; (*TAIR) AT1G58030.1 (e_value=0.0) | Symbols: CAT2 | cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635;; (*ITAG) Solyc10g081460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61835895-61843695 transcript_region:SL2.40ch10:61835895..61843695- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C3GEP6_BACTU); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00018981g0021.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|5|0|267; (*GB) gi|53749483|gb|AAU90336.1| (e_value=2e-40) F-box protein interaction domain containing protein [Solanum demissum];; (*ITAG) Solyc09g064970.1.1 (e_value=7e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58253692-58255207 transcript_region:SL2.40ch09:58253692..58255207+ functional_description:"F-box protein interaction domain containing protein (AHRD V1 ***- Q60D10_SOLDE); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00018981g0020.1 protein AED:0.20 eAED:0.63 QI:0|0|0|0.8|0|0|5|0|198; (*ITAG) Solyc10g081450.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61831485-61834714 transcript_region:SL2.40ch10:61831485..61834714+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LX46_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00002297g0016.1 protein AED:0.13 eAED:0.13 QI:15|0.5|0.66|1|0.5|0.33|3|584|585; (*GB) gi|255564699|ref|XP_002523344.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=3e-59) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc01g095990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78862543-78865800 transcript_region:SL2.40ch01:78862543..78865800+ go_terms:GO:0043008 functional_description:"Phosphatidylinositol kinase family-like protein (Fragment) (AHRD V1 *--- C3SA88_BRADI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00002297g0023.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|284; (*GB) gi|225470908|ref|XP_002263581.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100250204 [Vitis vinifera];; (*TAIR) AT1G64450.1 (e_value=2e-34) | Symbols: | Glycine-rich protein family | chr1:23941758-23942786 REVERSE LENGTH=342;; (*ITAG) Solyc01g096000.2.1 (e_value=2e-74) genomic_reference:SL2.40ch01 gene_region:78866675-78867710 transcript_region:SL2.40ch01:78866675..78867710+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SQ86_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00002297g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|288; (*GB) gi|255564703|ref|XP_002523346.1| (e_value=4e-110) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O32107|YUID_BACSU (e_value=2e-25) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT3G61770.1 (e_value=2e-107) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:22864635-22866248 FORWARD LENGTH=284;; (*ITAG) Solyc01g095980.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:78856552-78860045 transcript_region:SL2.40ch01:78856552..78860045+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 *--- A4XKK1_CALS8); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00002297g0018.1 protein AED:0.02 eAED:0.02 QI:182|1|1|1|0.8|0.66|6|722|1167; (*GB) gi|225470910|ref|XP_002263610.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245070 [Vitis vinifera];; (*TAIR) AT3G61780.1 (e_value=0.0) | Symbols: emb1703 | embryo defective 1703 | chr3:22867814-22871462 REVERSE LENGTH=1121;; (*ITAG) Solyc01g096010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78869233-78874628 transcript_region:SL2.40ch01:78869233..78874628- functional_description:"Unknown Protein (AHRD V1)"; NbS00002297g0013.1 protein AED:0.25 eAED:0.26 QI:0|1|0|1|1|1|2|0|698; (*GB) gi|359489576|ref|XP_002264071.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250210 [Vitis vinifera];; (*SWP) sp|Q9M358|UVSSA_ARATH (e_value=0.0) UV-stimulated scaffold protein A homolog OS=Arabidopsis thaliana GN=At3g61800 PE=3 SV=1;; (*TAIR) AT3G61800.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). | chr3:22874723-22876846 REVERSE LENGTH=664;; (*ITAG) Solyc01g096030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78880255-78883964 transcript_region:SL2.40ch01:78880255..78883964- functional_description:"ENTH/VHS domain-containing protein (AHRD V1 *--- D3BFQ6_POLPA); contains Interpro domain(s) IPR018610 Protein of unknown function DUF2043 "; NbS00002297g0019.1 protein AED:0.27 eAED:0.27 QI:260|1|0.66|1|0.5|0.66|3|0|331; (*GB) gi|379055945|emb|CCG06554.1| (e_value=0.0) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc01g096020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78874941-78878577 transcript_region:SL2.40ch01:78874941..78878577- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00028217g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|224142553|ref|XP_002324620.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=2e-19) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=1e-20) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc01g005200.1.1 (e_value=5e-94) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:154250-155140 transcript_region:SL2.40ch01:154250..155140+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7M6E6_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00053964g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|315; (*GB) gi|28558782|gb|AAO45753.1| (e_value=6e-55) RING/c3HC4/PHD zinc finger-like protein [Cucumis melo subsp. melo];; (*SWP) sp|O64763|ATL9_ARATH (e_value=5e-44) E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1;; (*TAIR) AT2G35000.1 (e_value=4e-45) | Symbols: | RING/U-box superfamily protein | chr2:14751809-14752945 REVERSE LENGTH=378;; (*ITAG) Solyc12g087860.1.1 (e_value=6e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014234g0011.1 protein AED:0.10 eAED:0.13 QI:193|0.5|0.57|1|0.66|0.71|7|291|681; (*GB) gi|296088921|emb|CBI38481.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23491|PP315_ARATH (e_value=2e-151) Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2;; (*TAIR) AT4G16470.1 (e_value=1e-152) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9287862-9289541 REVERSE LENGTH=501;; (*ITAG) Solyc11g012480.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5312806-5318311 transcript_region:SL2.40ch11:5312806..5318311+ go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- B9IH47_POPTR); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00014234g0004.1 protein AED:0.38 eAED:0.38 QI:48|-1|0|1|-1|1|1|90|43 NbS00014234g0010.1 protein AED:0.06 eAED:0.11 QI:41|0|0|1|0|0|2|0|173; (*ITAG) Solyc11g012500.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5326716-5327739 transcript_region:SL2.40ch11:5326716..5327739- functional_description:"Unknown Protein (AHRD V1)"; NbS00002103g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|324; (*GB) gi|225469216|ref|XP_002264407.1| (e_value=9e-90) PREDICTED: transcription factor bHLH93-like [Vitis vinifera];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=2e-59) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=1e-60) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc02g091690.2.1 (e_value=7e-115) genomic_reference:SL2.40ch02 gene_region:47505178-47506799 transcript_region:SL2.40ch02:47505178..47506799+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **-* A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00002633g0006.1 protein AED:0.20 eAED:0.20 QI:1285|1|1|1|1|1|4|340|538; (*GB) gi|350535078|ref|NP_001234686.1| (e_value=0.0) protein phosphatase 2C ABI2 homolog [Solanum lycopersicum];; (*SWP) sp|Q9CAJ0|P2C16_ARATH (e_value=0.0) Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1;; (*TAIR) AT1G72770.3 (e_value=0.0) | Symbols: HAB1 | homology to ABI1 | chr1:27390998-27392851 FORWARD LENGTH=511;; (*ITAG) Solyc03g121880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63965205-63970550 transcript_region:SL2.40ch03:63965205..63970550+ go_terms:GO:0005515 functional_description:"Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0005515 NbS00005160g0001.1 protein AED:0.12 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|345843162|gb|AEO18237.1| (e_value=7e-139) Bti9 [Nicotiana benthamiana];; (*TAIR) AT3G21630.1 (e_value=4e-59) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc07g049180.2.1 (e_value=1e-104) genomic_reference:SL2.40ch07 gene_region:56760988-56770880 transcript_region:SL2.40ch07:56760988..56770880- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00023496g0008.1 protein AED:0.16 eAED:0.16 QI:251|0.85|0.61|0.95|0.95|0.95|21|0|1191; (*GB) gi|225452112|ref|XP_002281005.1| (e_value=0.0) PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Vitis vinifera];; (*SWP) sp|Q08BT5|K1468_XENTR (e_value=7e-52) LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1;; (*TAIR) AT5G16210.1 (e_value=0.0) | Symbols: | HEAT repeat-containing protein | chr5:5290999-5297779 REVERSE LENGTH=1180;; (*ITAG) Solyc02g086340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43586427-43595256 transcript_region:SL2.40ch02:43586427..43595256- go_terms:GO:0005488 functional_description:"LisH domain and HEAT repeat-containing protein KIAA1468 (AHRD V1 *-*- K1468_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00028720g0003.1 protein AED:0.09 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|68449764|gb|AAY97869.1| (e_value=2e-46) ACI49 [Solanum lycopersicum];; (*TAIR) AT3G09520.1 (e_value=3e-37) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005840.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00028720g0002.1 protein AED:0.07 eAED:0.07 QI:238|1|0.5|1|0|0|2|0|1189; (*GB) gi|13620226|emb|CAC36401.1| (e_value=0.0) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q9ZWC8|BRL1_ARATH (e_value=0.0) Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1;; (*TAIR) AT1G55610.2 (e_value=0.0) | Symbols: BRL1 | BRI1 like | chr1:20779874-20783374 REVERSE LENGTH=1166;; (*ITAG) Solyc07g066230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64932923-64936722 transcript_region:SL2.40ch07:64932923..64936722- go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00032541g0004.1 protein AED:0.13 eAED:0.19 QI:7|0|0|1|0.75|0.6|5|0|585; (*GB) gi|255570599|ref|XP_002526256.1| (e_value=0.0) importin beta-1, putative [Ricinus communis];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=4e-92) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT5G53480.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00050778g0002.1 protein AED:0.07 eAED:0.37 QI:0|0|0|1|0|0|3|0|120; (*GB) gi|57013991|ref|YP_173463.1| (e_value=1e-46) hypothetical protein NitaMp125 [Nicotiana tabacum]; NbS00039466g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.66|1|1|1|6|0|456; (*GB) gi|77745479|gb|ABB02638.1| (e_value=0.0) 26S proteasome subunit 4-like [Solanum tuberosum];; (*SWP) sp|Q9SZD4|PRS4A_ARATH (e_value=0.0) 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1;; (*TAIR) AT4G29040.1 (e_value=0.0) | Symbols: RPT2a | regulatory particle AAA-ATPase 2A | chr4:14312369-14314386 FORWARD LENGTH=443;; (*ITAG) Solyc06g083620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45258804-45262774 transcript_region:SL2.40ch06:45258804..45262774- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit 4 (AHRD V1 ***- B6T2S0_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00039466g0006.1 protein AED:0.24 eAED:0.26 QI:517|0.66|0.57|1|0.5|0.42|7|0|587; (*GB) gi|359480088|ref|XP_002263397.2| (e_value=1e-97) PREDICTED: transcription factor PIF1-like [Vitis vinifera];; (*SWP) sp|Q8GZM7|PIF1_ARATH (e_value=3e-56) Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1;; (*TAIR) AT2G20180.3 (e_value=2e-57) | Symbols: PIL5 | phytochrome interacting factor 3-like 5 | chr2:8704276-8706538 REVERSE LENGTH=478;; (*ITAG) Solyc09g063010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56525973-56536072 transcript_region:SL2.40ch09:56525973..56536072- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0010313 NbS00039466g0008.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|84; (*GB) gi|336239411|gb|AEI27563.1| (e_value=2e-28) RNA polymerase beta subunit [Gouania mauritiana];; (*SWP) sp|A4QLI4|RPOC2_LOBMA (e_value=2e-29) DNA-directed RNA polymerase subunit beta'' OS=Lobularia maritima GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=2e-29) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc08g028940.1.1 (e_value=7e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21743376-21744423 transcript_region:SL2.40ch08:21743376..21744423- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WCH4_NEROL); contains Interpro domain(s) IPR007083 RNA polymerase Rpb1, domain 4 "; GO:0006350 NbS00011469g0014.1 protein AED:0.16 eAED:0.19 QI:0|0.77|0.5|1|1|1|10|0|1062; (*GB) gi|225425392|ref|XP_002276961.1| (e_value=0.0) PREDICTED: histidine kinase 3 [Vitis vinifera];; (*SWP) sp|Q9C5U1|AHK3_ARATH (e_value=0.0) Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1;; (*TAIR) AT1G27320.1 (e_value=0.0) | Symbols: AHK3, HK3 | histidine kinase 3 | chr1:9487780-9492027 FORWARD LENGTH=1036;; (*ITAG) Solyc05g015610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:11522127-11527984 transcript_region:SL2.40ch05:11522127..11527984+ go_terms:GO:0009884 functional_description:"Histidine kinase cytokinin receptor (AHRD V1 **** B9GZP2_POPTR); contains Interpro domain(s) IPR006189 CHASE "; GO:0009884 NbS00011469g0019.1 protein AED:0.16 eAED:0.16 QI:143|1|1|1|1|1|2|297|207; (*GB) gi|357462951|ref|XP_003601757.1| (e_value=3e-32) hypothetical protein MTR_3g085060 [Medicago truncatula];; (*TAIR) AT1G27300.1 (e_value=7e-24) | Symbols: | unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9483324-9484194 FORWARD LENGTH=200;; (*ITAG) Solyc05g015640.2.1 (e_value=9e-85) genomic_reference:SL2.40ch05 gene_region:11600531-11601719 transcript_region:SL2.40ch05:11600531..11601719- functional_description:"Unknown Protein (AHRD V1)"; NbS00011469g0016.1 protein AED:0.20 eAED:0.20 QI:343|1|1|1|1|1|13|360|964; (*GB) gi|365927830|gb|AEX07775.1| (e_value=0.0) calmodulin-binding transcription factor SR2L [Solanum lycopersicum];; (*SWP) sp|Q9FYG2|CMTA4_ARATH (e_value=0.0) Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1;; (*TAIR) AT1G67310.1 (e_value=0.0) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr1:25198182-25203126 REVERSE LENGTH=1016;; (*ITAG) Solyc05g015650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:11602390-11617832 transcript_region:SL2.40ch05:11602390..11617832- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 2 (AHRD V1 **** Q0WNN4_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00020975g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|0|2|0|299; (*GB) gi|290579513|gb|ADD51352.1| (e_value=2e-74) TT2 like MYB transcriptoin factor [Theobroma cacao];; (*SWP) sp|Q38850|MYB5_ARATH (e_value=2e-61) Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1;; (*TAIR) AT3G13540.1 (e_value=2e-62) | Symbols: ATMYB5, MYB5 | myb domain protein 5 | chr3:4420239-4421443 FORWARD LENGTH=249;; (*ITAG) Solyc08g008480.2.1 (e_value=8e-115) genomic_reference:SL2.40ch08 gene_region:2871831-2873624 transcript_region:SL2.40ch08:2871831..2873624- go_terms:GO:0003677,GO:0045449 functional_description:"Myb transcription factor (AHRD V1 *--- A5A383_SOLSC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00005069g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|224084680|ref|XP_002307386.1| (e_value=5e-67) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78110.1 (e_value=9e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). | chr1:29391879-29392907 FORWARD LENGTH=342;; (*ITAG) Solyc12g056990.1.1 (e_value=3e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48428427-48429341 transcript_region:SL2.40ch12:48428427..48429341+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057814g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.83|1|1|1|6|554|264; (*GB) gi|301070456|gb|ADK55590.1| (e_value=2e-145) plastid NEP interaction protein [Nicotiana benthamiana];; (*SWP) sp|Q8GT74|NIP2_ARATH (e_value=1e-103) NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1;; (*TAIR) AT2G17730.1 (e_value=8e-105) | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7704142-7705312 FORWARD LENGTH=241;; (*ITAG) Solyc02g083400.2.1 (e_value=9e-137) genomic_reference:SL2.40ch02 gene_region:41401809-41403535 transcript_region:SL2.40ch02:41401809..41403535+ go_terms:GO:0005515 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515 NbS00021850g0003.1 protein AED:0.67 eAED:0.81 QI:0|0|0|0.66|0|0.33|3|0|75 NbS00003570g0007.1 protein AED:0.09 eAED:0.09 QI:417|1|1|1|1|1|2|113|242; (*GB) gi|359482137|ref|XP_003632718.1| (e_value=5e-56) PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera];; (*TAIR) AT5G18130.1 (e_value=8e-38) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5995634-5997165 FORWARD LENGTH=280;; (*ITAG) Solyc10g078590.1.1 (e_value=6e-78) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59689717-59691185 transcript_region:SL2.40ch10:59689717..59691185- functional_description:"Unknown Protein (AHRD V1)"; NbS00003570g0008.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.6|0.5|0.6|5|0|237; (*GB) gi|40748265|gb|AAR89617.1| (e_value=1e-130) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|P51427|RS52_ARATH (e_value=1e-112) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=1e-113) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=4e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00025169g0002.1 protein AED:0.07 eAED:0.09 QI:324|0.8|0.5|1|0.8|0.66|6|0|407; (*GB) gi|350537693|ref|NP_001233793.1| (e_value=6e-110) calmodulin binding protein SUN-like [Solanum lycopersicum];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=4e-13) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT5G03960.1 (e_value=3e-37) | Symbols: IQD12 | IQ-domain 12 | chr5:1068333-1069683 REVERSE LENGTH=403;; (*ITAG) Solyc04g016480.2.1 (e_value=1e-171) genomic_reference:SL2.40ch04 gene_region:7305326-7308804 transcript_region:SL2.40ch04:7305326..7308804- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 *--* B4FU94_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00025169g0013.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|91 NbS00025169g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|307; (*GB) gi|19859|emb|CAA38324.1| (e_value=0.0) glucan endo-1,3-beta-glucosidase [Nicotiana tabacum];; (*SWP) sp|P36401|E13H_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT3G57270.1 (e_value=3e-99) | Symbols: BG1 | beta-1,3-glucanase 1 | chr3:21191336-21193118 REVERSE LENGTH=340;; (*ITAG) Solyc10g079860.1.1 (e_value=2e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60654548-60655705 transcript_region:SL2.40ch10:60654548..60655705- go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q68V46_OLEEU); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00002798g0005.1 protein AED:0.11 eAED:0.11 QI:189|0.87|0.66|1|0.87|0.88|9|0|312; (*GB) gi|255560125|ref|XP_002521080.1| (e_value=7e-94) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6NLW5|XRI1_ARATH (e_value=8e-80) Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2;; (*TAIR) AT5G48720.2 (e_value=6e-81) | Symbols: XRI, XRI1 | x-ray induced transcript 1 | chr5:19759233-19761621 FORWARD LENGTH=300;; (*ITAG) Solyc06g083410.2.1 (e_value=4e-180) genomic_reference:SL2.40ch06 gene_region:45104228-45107324 transcript_region:SL2.40ch06:45104228..45107324+ go_terms:GO:0005515 functional_description:"Os04g0376600 protein (Fragment) (AHRD V1 *--- C7J0T0_ORYSJ)"; GO:0005515 NbS00002798g0003.1 protein AED:0.83 eAED:0.84 QI:0|0|0|0.25|1|1|4|0|100; (*GB) gi|255605099|ref|XP_002538339.1| (e_value=2e-21) conserved hypothetical protein [Ricinus communis]; NbS00016776g0001.1 protein AED:0.07 eAED:0.08 QI:0|0.66|0.5|1|1|1|4|0|546; (*GB) gi|146395463|gb|ABQ28669.1| (e_value=0.0) beta-fructofuranosidase [Solanum lycopersicum];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00013228g0016.1 protein AED:0.22 eAED:0.24 QI:0|0.90|0.95|1|0.95|0.90|22|622|794; (*GB) gi|225446449|ref|XP_002277029.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=0.0) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00013228g0017.1 protein AED:0.31 eAED:0.31 QI:118|1|1|1|1|1|3|389|97; (*GB) gi|225446443|ref|XP_002276788.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100243665 isoform 1 [Vitis vinifera];; (*TAIR) AT2G20585.1 (e_value=9e-21) | Symbols: NFD6 | nuclear fusion defective 6 | chr2:8865222-8866367 FORWARD LENGTH=100;; (*ITAG) Solyc07g053670.2.1 (e_value=4e-39) genomic_reference:SL2.40ch07 gene_region:59441366-59444178 transcript_region:SL2.40ch07:59441366..59444178+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013228g0002.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|1|1|2|0|263; (*GB) gi|255553651|ref|XP_002517866.1| (e_value=1e-53) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O49453|Y4844_ARATH (e_value=2e-48) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT2G33845.1 (e_value=1e-52) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:14317781-14318712 FORWARD LENGTH=182;; (*ITAG) Solyc10g008190.2.1 (e_value=3e-69) genomic_reference:SL2.40ch10 gene_region:2311949-2314392 transcript_region:SL2.40ch10:2311949..2314392- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00000926g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|358008882|gb|AET99100.1| (e_value=3e-70) dehydration-responsive element-binding protein DREB3 [Solanum tuberosum];; (*SWP) sp|Q9SNE1|ERF11_ARATH (e_value=4e-43) Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1;; (*TAIR) AT3G50260.1 (e_value=3e-44) | Symbols: CEJ1, ATERF#011, DEAR1 | cooperatively regulated by ethylene and jasmonate 1 | chr3:18634687-18635148 FORWARD LENGTH=153;; (*ITAG) Solyc02g093130.1.1 (e_value=3e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48631396-48631797 transcript_region:SL2.40ch02:48631396..48631797+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00000926g0018.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.66|0.5|0.66|3|0|74 NbS00000926g0016.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.25|1|1|4|0|165 NbS00001456g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|153; (*GB) gi|357447841|ref|XP_003594196.1| (e_value=4e-41) hypothetical protein MTR_2g025490 [Medicago truncatula];; (*TAIR) AT4G22320.1 (e_value=1e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc04g014710.2.1 (e_value=4e-68) genomic_reference:SL2.40ch04 gene_region:4972023-4976850 transcript_region:SL2.40ch04:4972023..4976850- functional_description:"cDNA clone 002-156-B04 full insert sequence (AHRD V1 *-*- B7F1Y4_ORYSJ)"; NbS00001456g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|0.66|3|0|90; (*GB) gi|357521493|ref|XP_003631035.1| (e_value=2e-17) Retinoblastoma-binding protein [Medicago truncatula];; (*TAIR) AT3G01435.1 (e_value=3e-18) | Symbols: | Expressed protein | chr3:166853-167984 REVERSE LENGTH=115; NbS00015812g0004.1 protein AED:0.23 eAED:0.25 QI:0|0|0.2|1|1|1|5|0|516; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=2e-55) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*TAIR) AT5G09530.1 (e_value=5e-25) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g049150.1.1 (e_value=9e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46025362-46026699 transcript_region:SL2.40ch12:46025362..46026699- functional_description:"Extensin-like protein Ext1 (AHRD V1 ***- Q8VWM5_SOLLC)"; NbS00013998g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|109; (*ITAG) Solyc06g073990.1.1 (e_value=8e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:42126421-42126780 transcript_region:SL2.40ch06:42126421..42126780+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046711g0011.1 protein AED:0.20 eAED:0.20 QI:212|1|1|1|0.5|0.6|5|211|376; (*GB) gi|297737474|emb|CBI26675.3| (e_value=9e-133) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LTQ0|RTL2_ARATH (e_value=5e-107) Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1;; (*TAIR) AT3G20420.1 (e_value=4e-108) | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 | chr3:7119371-7120895 REVERSE LENGTH=391;; (*ITAG) Solyc12g014410.1.1 (e_value=8e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5352607-5354889 transcript_region:SL2.40ch12:5352607..5354889+ go_terms:GO:0004525 functional_description:"Ribonuclease III family protein (AHRD V1 *-** D7MAI2_ARALY); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0004525 NbS00046711g0001.1 protein AED:0.19 eAED:0.27 QI:0|0.6|0.33|0.83|1|1|6|0|175; (*GB) gi|255577151|ref|XP_002529459.1| (e_value=1e-101) Cell differentiation protein rcd1, putative [Ricinus communis];; (*SWP) sp|Q6NWL4|RCD1_DANRE (e_value=3e-80) Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1 PE=2 SV=1;; (*TAIR) AT3G20800.1 (e_value=1e-97) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc12g014400.1.1 (e_value=2e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; NbS00046711g0009.1 protein AED:0.33 eAED:0.42 QI:0|0|0|1|0|0|2|0|181; (*ITAG) Solyc10g006150.2.1 (e_value=5e-17) genomic_reference:SL2.40ch10 gene_region:879559-881917 transcript_region:SL2.40ch10:879559..881917+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002227g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|47971184|dbj|BAD22534.1| (e_value=3e-145) harpin inducing protein 1-like 18 [Nicotiana tabacum];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=3e-30) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT2G35980.1 (e_value=2e-60) | Symbols: YLS9, NHL10, ATNHL10 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:15110635-15111318 FORWARD LENGTH=227;; (*ITAG) Solyc10g081980.1.1 (e_value=9e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62218431-62223520 transcript_region:SL2.40ch10:62218431..62223520+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00012662g0107.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|108 NbS00012662g0113.1 protein AED:0.24 eAED:0.24 QI:228|0.75|0.8|1|0.5|0.6|5|0|237 NbS00012662g0116.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|115 NbS00012662g0118.1 protein AED:0.71 eAED:0.74 QI:0|0|0|0.2|1|1|5|0|295 NbS00012662g0120.1 protein AED:0.32 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|145 NbS00012662g0112.1 protein AED:0.59 eAED:1.00 QI:0|0|0|0.6|1|1|5|0|172 NbS00012662g0119.1 protein AED:0.49 eAED:0.50 QI:0|0|0|1|0|0|2|0|70 NbS00034083g0001.1 protein AED:0.21 eAED:0.56 QI:0|0|0|1|1|1|2|0|297; (*GB) gi|356567978|ref|XP_003552191.1| (e_value=1e-89) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Glycine max];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=1e-46) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT1G55530.1 (e_value=3e-86) | Symbols: | RING/U-box superfamily protein | chr1:20729472-20730527 REVERSE LENGTH=351;; (*ITAG) Solyc01g050040.2.1 (e_value=2e-82) genomic_reference:SL2.40ch01 gene_region:43180160-43181597 transcript_region:SL2.40ch01:43180160..43181597- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00034083g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|1|1|3|0|461; (*GB) gi|2497543|sp|Q42954.1|KPYC_TOBAC (e_value=0.0) RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK;; (*SWP) sp|Q42954|KPYC_TOBAC (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G56350.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:22820254-22822529 REVERSE LENGTH=498;; (*ITAG) Solyc01g049650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:40681621-40683865 transcript_region:SL2.40ch01:40681621..40683865+ go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- B9SBM7_RICCO); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00034083g0108.1 protein AED:0.15 eAED:0.15 QI:442|0.88|0.9|1|0.66|0.6|10|645|90 NbS00027169g0007.1 protein AED:0.24 eAED:0.30 QI:116|0.5|0.42|1|0.66|0.57|7|0|413; (*GB) gi|356521265|ref|XP_003529277.1| (e_value=0.0) PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Glycine max];; (*SWP) sp|Q10MQ2|DAPAT_ORYSJ (e_value=0.0) Probable LL-diaminopimelate aminotransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=AGD2 PE=2 SV=1;; (*TAIR) AT4G33680.1 (e_value=0.0) | Symbols: AGD2 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:16171847-16174630 REVERSE LENGTH=461;; (*ITAG) Solyc06g073280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41539950-41545003 transcript_region:SL2.40ch06:41539950..41545003+ go_terms:GO:0010285,GO:0005507 functional_description:"LL-diaminopimelate aminotransferase (AHRD V1 **** A8IW39_CHLRE); contains Interpro domain(s) IPR019942 LL-diaminopimelate aminotransferase, plant-related "; GO:0010285,GO:0005507 NbS00036752g0007.1 protein AED:0.07 eAED:0.07 QI:383|1|1|1|1|1|2|244|953; (*GB) gi|224063397|ref|XP_002301126.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G49660.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:20161401-20164534 REVERSE LENGTH=966;; (*ITAG) Solyc04g077010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59562906-59566375 transcript_region:SL2.40ch04:59562906..59566375+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00038351g0005.1 protein AED:0.32 eAED:0.33 QI:0|0.33|0.57|1|0.5|0.42|7|387|391; (*GB) gi|359386140|gb|AEV43359.1| (e_value=7e-99) structural maintenance of chromosomes domain-containing protein [Citrus sinensis];; (*TAIR) AT3G14750.1 (e_value=1e-74) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). | chr3:4953765-4955373 REVERSE LENGTH=331;; (*ITAG) Solyc07g062110.2.1 (e_value=5e-140) genomic_reference:SL2.40ch07 gene_region:62145377-62148028 transcript_region:SL2.40ch07:62145377..62148028- functional_description:"Myosin-like protein (AHRD V1 **-- Q7XIR7_ORYSJ)"; NbS00002507g0014.1 protein AED:0.28 eAED:0.29 QI:120|0.8|0.66|1|0.2|0.5|6|0|310; (*GB) gi|297735770|emb|CBI18457.3| (e_value=3e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5SPR8|ESCO2_DANRE (e_value=2e-20) N-acetyltransferase ESCO2 OS=Danio rerio GN=esco2 PE=2 SV=1;; (*TAIR) AT4G31400.1 (e_value=1e-89) | Symbols: CTF7 | damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345;; (*ITAG) Solyc01g007160.2.1 (e_value=7e-174) genomic_reference:SL2.40ch01 gene_region:1728460-1733199 transcript_region:SL2.40ch01:1728460..1733199+ go_terms:GO:0006281 functional_description:"N-acetyltransferase ESCO1 (AHRD V1 **-- B6TTW6_MAIZE); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0006281 NbS00002507g0013.1 protein AED:0.42 eAED:0.42 QI:434|0.66|0.75|1|0|0.25|4|349|65; (*ITAG) Solyc01g007180.2.1 (e_value=7e-25) genomic_reference:SL2.40ch01 gene_region:1742088-1746006 transcript_region:SL2.40ch01:1742088..1746006- functional_description:"Unknown Protein (AHRD V1)"; NbS00002507g0012.1 protein AED:0.00 eAED:0.00 QI:0|0|0|1|0|0|2|0|1090; (*GB) gi|255569420|ref|XP_002525677.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G03680.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr3:907624-910677 FORWARD LENGTH=1017;; (*ITAG) Solyc01g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1734046-1737132 transcript_region:SL2.40ch01:1734046..1737132- functional_description:"Protein unc-13 homolog C (AHRD V1 *--- UN13C_RAT); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbC26048890g0003.1 protein AED:0.08 eAED:0.08 QI:352|1|0.66|1|0|0|3|44|255; (*GB) gi|42741727|gb|AAS45124.1| (e_value=6e-112) WAK-like kinase [Solanum lycopersicum];; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=7e-30) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT4G00955.1 (e_value=2e-33) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G23450.1); Has 94 Blast hits to 88 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:412218-412976 FORWARD LENGTH=252;; (*ITAG) Solyc02g090110.2.1 (e_value=3e-113) genomic_reference:SL2.40ch02 gene_region:46307613-46313725 transcript_region:SL2.40ch02:46307613..46313725- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00022054g0014.1 protein AED:0.15 eAED:0.17 QI:48|1|0.71|1|1|1|7|0|661; (*GB) gi|225444019|ref|XP_002281594.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Vitis vinifera];; (*SWP) sp|A9LNK9|CPSF_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1;; (*TAIR) AT1G30460.1 (e_value=0.0) | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631;; (*ITAG) Solyc02g021760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14319129-14335346 transcript_region:SL2.40ch02:14319129..14335346- go_terms:GO:0005516,GO:0003723 functional_description:"mRNA 3&apos-end-processing protein yth1 (AHRD V1 *--- B2WC08_PYRTR); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005516,GO:0003723 NbS00022054g0010.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|114; (*GB) gi|224115626|ref|XP_002317082.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5PP70|NTM1_ARATH (e_value=3e-46) Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1;; (*TAIR) AT5G44450.1 (e_value=1e-46) | Symbols: | methyltransferases | chr5:17914360-17916017 REVERSE LENGTH=334;; (*ITAG) Solyc02g021700.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:14281494-14294175 transcript_region:SL2.40ch02:14281494..14294175- go_terms:GO:0005515,GO:0008276 functional_description:"Alpha N-terminal protein methyltransferase 1 (AHRD V1 **** NTM1_ARATH); contains Interpro domain(s) IPR008576 Protein of unknown function DUF858, methyltransferase-like "; GO:0005515,GO:0008276 NbS00022054g0009.1 protein AED:0.64 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|77; (*ITAG) Solyc02g021690.2.1 (e_value=1e-14) genomic_reference:SL2.40ch02 gene_region:14269525-14271967 transcript_region:SL2.40ch02:14269525..14271967- go_terms:GO:0008168 functional_description:"Methyltransferase-like protein 11A (AHRD V1 ***- D3PG00_9MAXI); contains Interpro domain(s) IPR008576 Protein of unknown function DUF858, methyltransferase-like "; GO:0008168 NbS00025929g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.4|0.16|0.83|1|1|6|0|606; (*GB) gi|297736574|emb|CBI25445.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BGH2|SAM50_MOUSE (e_value=1e-13) Sorting and assembly machinery component 50 homolog OS=Mus musculus GN=Samm50 PE=1 SV=1;; (*TAIR) AT5G05520.1 (e_value=0.0) | Symbols: | Outer membrane OMP85 family protein | chr5:1632912-1635104 FORWARD LENGTH=524;; (*ITAG) Solyc04g079270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61377082-61381940 transcript_region:SL2.40ch04:61377082..61381940- go_terms:GO:0019867 functional_description:"Sorting and assembly machinery component 50 homolog (AHRD V1 **-- B5X2H0_SALSA); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00034866g0007.1 protein AED:0.07 eAED:0.07 QI:387|0.75|0.6|0.8|0.75|0.6|5|0|87; (*GB) gi|6288682|gb|AAF06696.1|AF031487_1 (e_value=2e-43) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=6e-22) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT3G12250.2 (e_value=3e-22) | Symbols: TGA6, BZIP45 | TGACG motif-binding factor 6 | chr3:3906351-3908583 FORWARD LENGTH=330;; (*ITAG) Solyc11g064950.1.1 (e_value=4e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00038849g0004.1 protein AED:0.22 eAED:0.22 QI:51|1|0.90|1|0.7|0.81|11|0|368; (*GB) gi|297745272|emb|CBI40352.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54N73|7TMK1_DICDI (e_value=7e-41) Seven transmembrane domain-containing tyrosine-protein kinase 1 OS=Dictyostelium discoideum GN=7tmk1 PE=3 SV=1;; (*TAIR) AT3G58760.1 (e_value=2e-89) | Symbols: | Integrin-linked protein kinase family | chr3:21728756-21731740 FORWARD LENGTH=471;; (*ITAG) Solyc10g017490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5362924-5369956 transcript_region:SL2.40ch10:5362924..5369956+ go_terms:GO:0004704 functional_description:"Kinase family protein (AHRD V1 **** D7KBF8_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004704 NbS00038849g0014.1 protein AED:0.54 eAED:0.56 QI:0|0|0|0.66|1|1|3|0|136; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042420.1.1 (e_value=8e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43129413-43132685 transcript_region:SL2.40ch12:43129413..43132685- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00038849g0018.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|0.66|3|0|118; (*GB) gi|224127672|ref|XP_002320132.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT4G00467.1 (e_value=9e-22) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:214846-216076 REVERSE LENGTH=202;; (*ITAG) Solyc10g017480.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5353899-5357542 transcript_region:SL2.40ch10:5353899..5357542- functional_description:"Elicitor-responsive protein 1 (AHRD V1 **-- B6T411_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00038849g0017.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|238; (*GB) gi|388519441|gb|AFK47782.1| (e_value=4e-71) unknown [Lotus japonicus];; (*TAIR) AT5G64010.1 (e_value=3e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25618810-25620179 REVERSE LENGTH=236;; (*ITAG) Solyc01g105570.2.1 (e_value=4e-140) genomic_reference:SL2.40ch01 gene_region:85464806-85470238 transcript_region:SL2.40ch01:85464806..85470238- functional_description:"Genomic DNA chromosome 5 P1 clone MBM17 (AHRD V1 ***- Q9LVN4_ARATH)"; NbS00038849g0015.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0|0|2|0|227; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-40) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00060838g0004.1 protein AED:0.12 eAED:0.12 QI:170|1|1|1|0.81|0.83|12|394|368; (*GB) gi|366984550|gb|AEX09184.1| (e_value=0.0) glycolate oxidase [Gossypium hirsutum];; (*SWP) sp|O49506|GLO5_ARATH (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1;; (*TAIR) AT4G18360.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr4:10146141-10148386 REVERSE LENGTH=368;; (*ITAG) Solyc08g048250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:38457698-38464744 transcript_region:SL2.40ch08:38457698..38464744- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0RY96_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00038857g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.75|1|1|1|8|0|302; (*GB) gi|225454024|ref|XP_002274805.1| (e_value=5e-132) PREDICTED: tRNA 2'-phosphotransferase 1 [Vitis vinifera];; (*SWP) sp|Q5EAR5|TRPT1_DANRE (e_value=6e-40) tRNA 2'-phosphotransferase 1 OS=Danio rerio GN=trpt1 PE=2 SV=2;; (*TAIR) AT2G45330.1 (e_value=2e-115) | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1 / KptA family | chr2:18686340-18687874 FORWARD LENGTH=289;; (*ITAG) Solyc01g091210.2.1 (e_value=6e-148) genomic_reference:SL2.40ch01 gene_region:76652503-76658043 transcript_region:SL2.40ch01:76652503..76658043- go_terms:GO:0006388 functional_description:"tRNA 2&apos-phosphotransferase (AHRD V1 ***- B6K5D9_SCHJY); contains Interpro domain(s) IPR002745 Phosphotransferase KptA/Tpt1 "; GO:0006388 NbS00038857g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|225454018|ref|XP_002281007.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=0.0) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc01g091200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76648646-76650521 transcript_region:SL2.40ch01:76648646..76650521+ go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00054693g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|0|1|0|160; (*GB) gi|225455930|ref|XP_002276201.1| (e_value=7e-11) PREDICTED: uncharacterized protein LOC100259501 [Vitis vinifera];; (*ITAG) Solyc07g064300.2.1 (e_value=1e-48) genomic_reference:SL2.40ch07 gene_region:63733504-63738297 transcript_region:SL2.40ch07:63733504..63738297+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013540g0011.1 protein AED:0.10 eAED:0.10 QI:50|1|1|1|1|1|3|225|214; (*GB) gi|505588|gb|AAA19216.1| (e_value=5e-132) 5-epi-aristolochene synthase [Nicotiana tabacum];; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=1e-132) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.2 (e_value=3e-35) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101180.2.1 (e_value=6e-107) genomic_reference:SL2.40ch01 gene_region:82781170-82783261 transcript_region:SL2.40ch01:82781170..82783261+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00013540g0003.1 protein AED:0.18 eAED:0.20 QI:119|0.5|0.6|1|1|1|5|0|360; (*GB) gi|157837030|pdb|5EAT|A (e_value=0.0) Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate;; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=0.0) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.2 (e_value=8e-79) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101170.2.1 (e_value=2e-167) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00013540g0013.1 protein AED:0.11 eAED:0.11 QI:165|1|1|1|0.55|0.7|10|198|572; (*GB) gi|359480863|ref|XP_002275476.2| (e_value=2e-173) PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Vitis vinifera];; (*SWP) sp|Q9FPS0|UBP27_ARATH (e_value=9e-100) Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1;; (*TAIR) AT4G39370.1 (e_value=7e-101) | Symbols: UBP27 | ubiquitin-specific protease 27 | chr4:18306392-18308625 FORWARD LENGTH=494;; (*ITAG) Solyc04g051410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49683384-49690786 transcript_region:SL2.40ch04:49683384..49690786+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** A5B229_VITVI); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00031978g0002.1 protein AED:0.80 eAED:0.82 QI:0|0|0|0.33|0.6|0.66|6|0|110 NbS00031978g0003.1 protein AED:0.27 eAED:0.41 QI:0|0|0|1|0|0|4|0|143 NbS00026862g0006.1 protein AED:0.21 eAED:0.21 QI:42|0.8|0.5|1|0.8|0.83|6|0|587; (*GB) gi|458456|gb|AAA16513.1| (e_value=0.0) alpha amylase precursor, partial [Cuscuta reflexa];; (*SWP) sp|P17859|AMYA_VIGMU (e_value=0.0) Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1;; (*TAIR) AT4G25000.1 (e_value=0.0) | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:12852109-12853825 REVERSE LENGTH=423;; (*ITAG) Solyc03g095710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50338173-50341110 transcript_region:SL2.40ch03:50338173..50341110- go_terms:GO:0004556 functional_description:"Alpha-amylase (AHRD V1 **** Q8LP27_IPONI); contains Interpro domain(s) IPR013775 Alpha-amylase, plant "; GO:0004556 NbS00047628g0009.1 protein AED:0.27 eAED:0.27 QI:381|1|1|1|1|1|10|557|477; (*GB) gi|217074984|gb|ACJ85852.1| (e_value=0.0) unknown [Medicago truncatula];; (*SWP) sp|Q8VXQ2|ALDH_CRAPL (e_value=0.0) Aldehyde dehydrogenase OS=Craterostigma plantagineum GN=ALDH PE=1 SV=1;; (*TAIR) AT1G44170.2 (e_value=0.0) | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase 3H1 | chr1:16796564-16800031 REVERSE LENGTH=484;; (*ITAG) Solyc06g060250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34593565-34601818 transcript_region:SL2.40ch06:34593565..34601818- go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase family protein expressed (AHRD V1 **** Q53NG8_ORYSJ); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00047628g0010.1 protein AED:0.18 eAED:0.28 QI:0|0.5|0|1|0.5|0.33|3|0|317; (*GB) gi|255558652|ref|XP_002520351.1| (e_value=2e-44) Protein psi1, putative [Ricinus communis];; (*SWP) sp|Q09912|PSI1_SCHPO (e_value=2e-15) Protein psi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psi1 PE=2 SV=2;; (*TAIR) AT1G11040.1 (e_value=4e-31) | Symbols: | HSP40/DnaJ peptide-binding protein | chr1:3679225-3680924 REVERSE LENGTH=438;; (*ITAG) Solyc06g060240.1.1 (e_value=8e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34591029-34593320 transcript_region:SL2.40ch06:34591029..34593320+ go_terms:GO:0006457 functional_description:"Chaperone protein dnaJ 3 (AHRD V1 *-*- DNAJ3_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0006457 NbS00007554g0012.1 protein AED:0.23 eAED:0.25 QI:0|1|0.5|1|0|0|2|333|241; (*GB) gi|359477323|ref|XP_002277551.2| (e_value=1e-63) PREDICTED: uncharacterized protein At5g19025 [Vitis vinifera];; (*SWP) sp|P0C8Q9|Y5902_ARATH (e_value=2e-52) Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3;; (*TAIR) AT3G06180.1 (e_value=1e-60) | Symbols: | Ribosomal protein L34e superfamily protein | chr3:1871705-1873554 FORWARD LENGTH=241;; (*ITAG) Solyc01g080180.2.1 (e_value=6e-96) genomic_reference:SL2.40ch01 gene_region:71906724-71912927 transcript_region:SL2.40ch01:71906724..71912927+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 *--- D7LAI5_ARALY); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0005840 NbS00007554g0020.1 protein AED:0.14 eAED:0.14 QI:0|0.83|0.42|1|0.83|0.71|7|0|912; (*GB) gi|255551487|ref|XP_002516789.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G23590.1 (e_value=0.0) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc01g080200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71915886-71927533 transcript_region:SL2.40ch01:71915886..71927533- functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00007554g0016.1 protein AED:0.20 eAED:0.21 QI:502|0.5|0.66|1|0.25|0.33|9|192|199; (*GB) gi|255551489|ref|XP_002516790.1| (e_value=4e-37) ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis];; (*SWP) sp|P49730|RIR2_TOBAC (e_value=9e-30) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G23580.1 (e_value=3e-28) | Symbols: RNR2, RNR2A | ribonucleotide reductase 2A | chr3:8460261-8462574 FORWARD LENGTH=341;; (*ITAG) Solyc01g080210.2.1 (e_value=8e-43) genomic_reference:SL2.40ch01 gene_region:71933765-71939638 transcript_region:SL2.40ch01:71933765..71939638- go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00007554g0021.1 protein AED:0.54 eAED:0.54 QI:0|0.33|0|0.5|0|0.5|4|0|271; (*GB) gi|255551487|ref|XP_002516789.1| (e_value=2e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G23590.1 (e_value=2e-32) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc01g080200.2.1 (e_value=2e-59) genomic_reference:SL2.40ch01 gene_region:71915886-71927533 transcript_region:SL2.40ch01:71915886..71927533- functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00007554g0018.1 protein AED:0.15 eAED:0.21 QI:0|0|0|1|0|0|5|0|676; (*GB) gi|225432514|ref|XP_002277532.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Vitis vinifera];; (*SWP) sp|P0C8Q8|PP394_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1;; (*TAIR) AT5G19020.1 (e_value=0.0) | Symbols: MEF18 | mitochondrial editing factor 18 | chr5:6352771-6354828 REVERSE LENGTH=685;; (*ITAG) Solyc01g080190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71913612-71915846 transcript_region:SL2.40ch01:71913612..71915846+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LYJ7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014347g0012.1 protein AED:0.22 eAED:0.24 QI:0|0.66|0.57|1|0.83|0.85|7|0|323; (*GB) gi|359483478|ref|XP_002269427.2| (e_value=3e-159) PREDICTED: uncharacterized oxidoreductase C663.09c-like [Vitis vinifera];; (*SWP) sp|Q7Z9I2|YCP9_SCHPO (e_value=2e-20) Uncharacterized oxidoreductase C663.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC663.09c PE=2 SV=1;; (*TAIR) AT4G20760.1 (e_value=7e-152) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:11129043-11130541 FORWARD LENGTH=298;; (*ITAG) Solyc02g023990.2.1 (e_value=2e-180) genomic_reference:SL2.40ch02 gene_region:15395931-15402452 transcript_region:SL2.40ch02:15395931..15402452+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **-- A1WVI4_HALHL); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00014347g0013.1 protein AED:0.29 eAED:0.29 QI:277|1|1|1|0.66|0.57|7|604|337; (*GB) gi|224122134|ref|XP_002330549.1| (e_value=9e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54PM7|NAGK_DICDI (e_value=2e-58) N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2;; (*TAIR) AT1G30540.1 (e_value=1e-154) | Symbols: | Actin-like ATPase superfamily protein | chr1:10816951-10819172 REVERSE LENGTH=351;; (*ITAG) Solyc02g023980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15374578-15384944 transcript_region:SL2.40ch02:15374578..15384944+ functional_description:"ATPase BadF/BadG/BcrA/BcrD-type family (AHRD V1 ***- D7KFL2_ARALY); contains Interpro domain(s) IPR002731 ATPase, BadF/BadG/BcrA/BcrD type "; NbS00007995g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|351726265|ref|NP_001235585.1| (e_value=1e-74) uncharacterized protein LOC100527403 [Glycine max];; (*SWP) sp|P45083|Y1161_HAEIN (e_value=8e-15) Putative esterase HI_1161 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1161 PE=1 SV=1;; (*TAIR) AT1G48320.1 (e_value=1e-70) | Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156;; (*ITAG) Solyc02g078410.1.1 (e_value=2e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37684338-37684826 transcript_region:SL2.40ch02:37684338..37684826- go_terms:GO:0005515,GO:0016291 functional_description:"Acyl-CoA thioesterase/ catalytic/ hydrolase acting on ester bonds (AHRD V1 **-* B6TLJ7_MAIZE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0005515,GO:0016291 NbS00007995g0004.1 protein AED:0.37 eAED:0.40 QI:63|0.5|0.66|1|0|0|3|86|158; (*GB) gi|351726265|ref|NP_001235585.1| (e_value=2e-74) uncharacterized protein LOC100527403 [Glycine max];; (*SWP) sp|P45083|Y1161_HAEIN (e_value=2e-14) Putative esterase HI_1161 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1161 PE=1 SV=1;; (*TAIR) AT1G48320.1 (e_value=2e-71) | Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156;; (*ITAG) Solyc02g078410.1.1 (e_value=5e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37684338-37684826 transcript_region:SL2.40ch02:37684338..37684826- go_terms:GO:0005515,GO:0016291 functional_description:"Acyl-CoA thioesterase/ catalytic/ hydrolase acting on ester bonds (AHRD V1 **-* B6TLJ7_MAIZE); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0005515,GO:0016291 NbS00030121g0005.1 protein AED:0.13 eAED:0.13 QI:108|1|1|1|1|1|4|1581|144; (*GB) gi|224460055|gb|ACN43578.1| (e_value=5e-83) nuclear cap-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9XFD1|NCBP2_ARATH (e_value=2e-75) Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1;; (*TAIR) AT5G44200.2 (e_value=1e-76) | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 | chr5:17802062-17803875 REVERSE LENGTH=257;; (*ITAG) Solyc02g062620.2.1 (e_value=2e-83) genomic_reference:SL2.40ch02 gene_region:28927635-28944665 transcript_region:SL2.40ch02:28927635..28944665- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 2 (AHRD V1 **** B6SNB6_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0000339 NbS00052280g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|86 NbS00051756g0005.1 protein AED:0.13 eAED:0.13 QI:371|0.5|0.33|1|0|0|3|0|613; (*GB) gi|224096774|ref|XP_002334671.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=2e-115) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=2e-116) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc10g047810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38225764-38227872 transcript_region:SL2.40ch10:38225764..38227872- go_terms:GO:0005529,GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468,GO:0005488 NbS00015223g0009.1 protein AED:0.06 eAED:0.06 QI:228|0.66|0.5|1|0.66|0.5|4|0|380; (*GB) gi|225439709|ref|XP_002272768.1| (e_value=4e-139) PREDICTED: transcription elongation factor A protein 3 [Vitis vinifera];; (*SWP) sp|Q2KI09|TCEA3_BOVIN (e_value=2e-38) Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1;; (*TAIR) AT2G38560.1 (e_value=2e-127) | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378;; (*ITAG) Solyc05g052190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61613622-61617218 transcript_region:SL2.40ch05:61613622..61617218- go_terms:GO:0005515 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 ***- B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515 NbS00015223g0004.1 protein AED:0.55 eAED:0.64 QI:110|0|0.25|0.75|1|1|4|0|84 NbS00015223g0006.1 protein AED:0.34 eAED:0.38 QI:30|0.33|0.5|1|1|1|4|381|243; (*GB) gi|297736649|emb|CBI25520.3| (e_value=7e-82) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G19985.1 (e_value=1e-57) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:10830542-10831711 REVERSE LENGTH=237;; (*ITAG) Solyc05g052170.2.1 (e_value=2e-74) genomic_reference:SL2.40ch05 gene_region:61604830-61607281 transcript_region:SL2.40ch05:61604830..61607281+ functional_description:"Acetyltransferase GNAT family protein (AHRD V1 ***- B6STV5_MAIZE)"; NbS00056107g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|224056873|ref|XP_002299066.1| (e_value=1e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|A7RP64|PNO1_NEMVE (e_value=2e-85) RNA-binding protein pno1 OS=Nematostella vectensis GN=pno1 PE=3 SV=1;; (*TAIR) AT3G13230.1 (e_value=1e-126) | Symbols: | RNA-binding KH domain-containing protein | chr3:4270423-4271070 FORWARD LENGTH=215;; (*ITAG) Solyc06g082620.1.1 (e_value=3e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44670745-44671383 transcript_region:SL2.40ch06:44670745..44671383- go_terms:GO:0051082 functional_description:"RNA-binding protein PNO1-like protein (AHRD V1 **** D0MTT7_PHYIN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051082 NbS00033224g0008.1 protein AED:0.40 eAED:0.40 QI:18|0|0|0.66|0.5|0.33|3|0|120; (*GB) gi|224111594|ref|XP_002315914.1| (e_value=4e-32) amino acid transporter [Populus trichocarpa];; (*TAIR) AT2G01170.2 (e_value=2e-31) | Symbols: BAT1 | bidirectional amino acid transporter 1 | chr2:102364-104157 REVERSE LENGTH=437;; (*ITAG) Solyc05g008760.2.1 (e_value=5e-38) genomic_reference:SL2.40ch05 gene_region:2991698-2994463 transcript_region:SL2.40ch05:2991698..2994463- go_terms:GO:0016020 functional_description:"Amino acid permease (AHRD V1 ***- B6SYL4_MAIZE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00033224g0007.1 protein AED:0.21 eAED:0.21 QI:332|0.64|0.66|0.93|0.85|0.93|15|6|673; (*GB) gi|296088263|emb|CBI35771.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A2AH22|AMRA1_MOUSE (e_value=2e-27) Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1;; (*TAIR) AT5G43930.3 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr5:17677047-17680577 FORWARD LENGTH=726;; (*ITAG) Solyc05g053130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62380994-62396966 transcript_region:SL2.40ch05:62380994..62396966+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7K7B4_CYAP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00036128g0002.1 protein AED:0.29 eAED:0.29 QI:1283|0.66|0.57|0.85|0.83|0.85|7|0|148; (*GB) gi|255545738|ref|XP_002513929.1| (e_value=8e-55) Melanoma-associated antigen G1, putative [Ricinus communis];; (*TAIR) AT1G34770.1 (e_value=6e-46) | Symbols: | CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | chr1:12746624-12748449 FORWARD LENGTH=237;; (*ITAG) Solyc10g018870.1.1 (e_value=6e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:10762727-10765241 transcript_region:SL2.40ch10:10762727..10765241- functional_description:"Melanoma-associated antigen G1 (AHRD V1 **-- MAGG1_MOUSE); contains Interpro domain(s) IPR002190 MAGE protein "; NbS00029297g0004.1 protein AED:0.19 eAED:0.19 QI:237|1|1|1|0.33|0.5|4|422|82; (*GB) gi|147778296|emb|CAN60816.1| (e_value=5e-48) hypothetical protein VITISV_033219 [Vitis vinifera];; (*SWP) sp|Q3E902|RS212_ARATH (e_value=5e-44) 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=2;; (*TAIR) AT5G27700.1 (e_value=4e-45) | Symbols: | Ribosomal protein S21e | chr5:9807541-9808048 REVERSE LENGTH=82;; (*ITAG) Solyc04g074900.2.1 (e_value=1e-55) genomic_reference:SL2.40ch04 gene_region:58410476-58411839 transcript_region:SL2.40ch04:58410476..58411839- go_terms:GO:0003735 functional_description:"40S ribosomal protein S21 (AHRD V1 ***- D7M5J1_ARALY); contains Interpro domain(s) IPR001931 Ribosomal protein S21e "; GO:0003735 NbS00029297g0006.1 protein AED:0.65 eAED:1.00 QI:0|0|0|0.4|0|0.4|5|0|143 NbS00029985g0006.1 protein AED:0.20 eAED:0.20 QI:465|1|0.5|1|0|0|2|0|448; (*GB) gi|224119320|ref|XP_002331282.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P48724|IF5_PHAVU (e_value=1e-178) Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G77840.1 (e_value=7e-159) | Symbols: | Translation initiation factor IF2/IF5 | chr1:29269087-29270400 FORWARD LENGTH=437;; (*ITAG) Solyc02g091210.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47167119-47168471 transcript_region:SL2.40ch02:47167119..47168471+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00029985g0004.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|225453068|ref|XP_002268613.1| (e_value=9e-58) PREDICTED: uncharacterized protein LOC100258732 [Vitis vinifera];; (*TAIR) AT3G03280.1 (e_value=8e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:765559-766059 FORWARD LENGTH=166;; (*ITAG) Solyc02g091180.1.1 (e_value=2e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47144069-47144569 transcript_region:SL2.40ch02:47144069..47144569+ functional_description:"cDNA clone J100026I16 full insert sequence (AHRD V1 **-- B7FA06_ORYSJ)"; NbS00029985g0021.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|0.71|0.75|8|157|318; (*GB) gi|225453070|ref|XP_002269621.1| (e_value=7e-177) PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5JPI9|MET10_HUMAN (e_value=2e-39) Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2;; (*TAIR) AT1G66680.1 (e_value=4e-149) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358;; (*ITAG) Solyc02g091190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47152463-47157532 transcript_region:SL2.40ch02:47152463..47157532+ go_terms:GO:0016279 functional_description:"Methyltransferase-like protein 10 (AHRD V1 **-* B5XB96_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0016279 NbS00029985g0020.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.4|1|0.75|0.6|5|0|234; (*GB) gi|359472644|ref|XP_002280349.2| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100259487 [Vitis vinifera];; (*TAIR) AT5G38070.1 (e_value=7e-32) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:15190254-15191588 FORWARD LENGTH=259;; (*ITAG) Solyc02g091230.2.1 (e_value=3e-62) genomic_reference:SL2.40ch02 gene_region:47173853-47176291 transcript_region:SL2.40ch02:47173853..47176291- go_terms:GO:0005515,GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH2 (AHRD V1 *--* B5XFT2_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515,GO:0004842 NbS00045823g0009.1 protein AED:0.01 eAED:0.02 QI:234|0.6|0.33|1|0.8|0.66|6|0|940; (*GB) gi|225441573|ref|XP_002281426.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Vitis vinifera];; (*SWP) sp|Q9XHM1|EIF3C_MEDTR (e_value=0.0) Eukaryotic translation initiation factor 3 subunit C OS=Medicago truncatula GN=TIF3C1 PE=2 SV=1;; (*TAIR) AT3G56150.2 (e_value=0.0) | Symbols: EIF3C | eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900;; (*ITAG) Solyc06g076150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43667291-43671362 transcript_region:SL2.40ch06:43667291..43671362- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit 8-like protein (AHRD V1 **** Q9LIL2_ARATH); contains Interpro domain(s) IPR008905 Eukaryotic translation initiation factor 3 subunit 8, N-terminal "; GO:0005515,GO:0003743 NbS00045823g0015.1 protein AED:0.11 eAED:0.12 QI:487|0.25|0.22|0.88|0.37|0.22|9|0|852; (*GB) gi|225441573|ref|XP_002281426.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Vitis vinifera];; (*SWP) sp|O49160|EIF3C_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana GN=TIF3C1 PE=1 SV=2;; (*TAIR) AT3G56150.2 (e_value=0.0) | Symbols: EIF3C | eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900;; (*ITAG) Solyc06g076150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43667291-43671362 transcript_region:SL2.40ch06:43667291..43671362- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit 8-like protein (AHRD V1 **** Q9LIL2_ARATH); contains Interpro domain(s) IPR008905 Eukaryotic translation initiation factor 3 subunit 8, N-terminal "; GO:0005515,GO:0003743 NbS00045823g0014.1 protein AED:0.33 eAED:0.33 QI:155|0.8|0.83|1|0.4|0.66|6|223|157; (*GB) gi|60279270|emb|CAA63967.1| (e_value=4e-78) pom14 [Solanum tuberosum];; (*SWP) sp|Q41050|OEP16_PEA (e_value=1e-60) Outer envelope pore protein 16, chloroplastic OS=Pisum sativum GN=OEP16 PE=1 SV=1;; (*TAIR) AT2G28900.1 (e_value=2e-53) | Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | outer plastid envelope protein 16-1 | chr2:12414423-12415459 REVERSE LENGTH=148;; (*ITAG) Solyc01g060070.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:62341465-62344465 transcript_region:SL2.40ch01:62341465..62344465- go_terms:GO:0015450 functional_description:"Pore protein homolog (AHRD V1 **-- Q3EA11_ARATH); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00045823g0022.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|92 NbS00008120g0004.1 protein AED:0.24 eAED:0.38 QI:0|0.16|0.14|1|0.33|0.28|7|61|558; (*GB) gi|359488334|ref|XP_002283268.2| (e_value=4e-73) PREDICTED: uncharacterized protein LOC100253163 [Vitis vinifera];; (*ITAG) Solyc02g085740.2.1 (e_value=1e-159) genomic_reference:SL2.40ch02 gene_region:43115437-43121950 transcript_region:SL2.40ch02:43115437..43121950+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027821g0012.1 protein AED:0.20 eAED:0.20 QI:139|0.91|0.92|1|0.75|0.76|13|354|504; (*GB) gi|266567|sp|P29677.1|MPPA_SOLTU (e_value=0.0) RecName: Full=Mitochondrial-processing peptidase subunit alpha; AltName: Full=Alpha-MPP; AltName: Full=Ubiquinol-cytochrome-c reductase subunit II; Flags: Precursor;; (*SWP) sp|P29677|MPPA_SOLTU (e_value=0.0) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323692-19326771 REVERSE LENGTH=503;; (*ITAG) Solyc12g008630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00027821g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|398; (*GB) gi|225445053|ref|XP_002283391.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245695 [Vitis vinifera];; (*TAIR) AT4G29310.1 (e_value=1e-165) | Symbols: | Protein of unknown function (DUF1005) | chr4:14437892-14439609 REVERSE LENGTH=424;; (*ITAG) Solyc12g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1996212-1999348 transcript_region:SL2.40ch12:1996212..1999348+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00027821g0013.1 protein AED:0.27 eAED:0.28 QI:0|0.33|0.42|1|0.16|0.28|7|0|287; (*GB) gi|359484523|ref|XP_002283341.2| (e_value=7e-131) PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=2e-76) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=2e-77) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc12g008620.1.1 (e_value=7e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2004115-2006399 transcript_region:SL2.40ch12:2004115..2006399+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00021043g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|346; (*GB) gi|296089835|emb|CBI39654.3| (e_value=8e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=2e-111) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT5G51890.1 (e_value=3e-86) | Symbols: | Peroxidase superfamily protein | chr5:21091163-21092335 REVERSE LENGTH=322;; (*ITAG) Solyc12g017870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7604504-7606358 transcript_region:SL2.40ch12:7604504..7606358- go_terms:GO:0055114 functional_description:"Peroxidase 1 (AHRD V1 ***- B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00021043g0017.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0|0.66|3|42|383; (*GB) gi|225460903|ref|XP_002277569.1| (e_value=2e-74) PREDICTED: ferric-chelate reductase 1 [Vitis vinifera];; (*TAIR) AT5G35735.1 (e_value=3e-33) | Symbols: | Auxin-responsive family protein | chr5:13900913-13902934 REVERSE LENGTH=404;; (*ITAG) Solyc12g017880.1.1 (e_value=6e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7611185-7613580 transcript_region:SL2.40ch12:7611185..7613580- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6SK92_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00021043g0019.1 protein AED:0.21 eAED:0.27 QI:0|0.75|0.4|1|0.75|0.8|5|0|210; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=2e-108) PHB2 [Nicotiana benthamiana];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=4e-64) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=1e-97) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=2e-108) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00021043g0016.1 protein AED:0.27 eAED:0.27 QI:135|0.7|0.81|1|0.7|0.81|11|165|547; (*GB) gi|225434243|ref|XP_002280371.1| (e_value=0.0) PREDICTED: poly(ADP-ribose) glycohydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=0.0) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.2 (e_value=0.0) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547;; (*ITAG) Solyc12g017920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7785524-7801666 transcript_region:SL2.40ch12:7785524..7801666- go_terms:GO:0004649 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-** Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0004649 NbS00021043g0020.1 protein AED:0.51 eAED:0.51 QI:0|1|0.75|1|0|0|4|28|118; (*GB) gi|224103011|ref|XP_002312889.1| (e_value=2e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPL6|AP2A1_ARATH (e_value=9e-30) AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana GN=ALPHA-ADR PE=1 SV=1;; (*TAIR) AT5G22770.2 (e_value=7e-31) | Symbols: alpha-ADR | alpha-adaptin | chr5:7579844-7588026 REVERSE LENGTH=1012;; (*ITAG) Solyc06g074650.2.1 (e_value=4e-31) genomic_reference:SL2.40ch06 gene_region:42580360-42594085 transcript_region:SL2.40ch06:42580360..42594085- go_terms:GO:0008022 functional_description:"AP-2 complex subunit alpha (AHRD V1 ***- C0NYN0_AJECG); contains Interpro domain(s) IPR017104 Adaptor protein complex AP-2, alpha subunit "; GO:0008022 NbS00021043g0021.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|363808070|ref|NP_001242470.1| (e_value=4e-44) uncharacterized protein LOC100786065 [Glycine max];; (*TAIR) AT2G46890.1 (e_value=6e-44) | Symbols: | Protein of unknown function (DUF1295) | chr2:19266879-19268134 REVERSE LENGTH=322;; (*ITAG) Solyc02g063390.2.1 (e_value=1e-61) genomic_reference:SL2.40ch02 gene_region:30063009-30065195 transcript_region:SL2.40ch02:30063009..30065195+ go_terms:GO:0016021 functional_description:"DUF1295 domain protein (Fragment) (AHRD V1 **-- C1N4N9_MICPS); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00027869g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|429; (*GB) gi|356552027|ref|XP_003544373.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g16860-like [Glycine max];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g097850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53624545-53627076 transcript_region:SL2.40ch03:53624545..53627076+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M889_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00040972g0007.1 protein AED:0.12 eAED:0.12 QI:100|0.85|0.87|1|0.85|0.87|8|0|447; (*GB) gi|350536629|ref|NP_001234256.1| (e_value=0.0) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=8e-177) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT1G80170.1 (e_value=6e-178) | Symbols: | Pectin lyase-like superfamily protein | chr1:30153646-30155683 REVERSE LENGTH=444;; (*ITAG) Solyc03g116500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59953511-59957819 transcript_region:SL2.40ch03:59953511..59957819+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00040972g0003.1 protein AED:0.23 eAED:0.40 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|317106740|dbj|BAJ53236.1| (e_value=3e-17) JHL06P13.17 [Jatropha curcas];; (*ITAG) Solyc03g116510.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59960022-59960303 transcript_region:SL2.40ch03:59960022..59960303+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040972g0005.1 protein AED:0.35 eAED:0.44 QI:0|0|0|1|1|1|2|0|144; (*GB) gi|224073736|ref|XP_002304148.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XI29|Y1540_ARATH (e_value=1e-23) Uncharacterized protein At1g15400 OS=Arabidopsis thaliana GN=At1g15400 PE=1 SV=2;; (*TAIR) AT1G15400.3 (e_value=8e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:5296019-5296824 REVERSE LENGTH=148;; (*ITAG) Solyc03g116490.1.1 (e_value=5e-64) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59947442-59947813 transcript_region:SL2.40ch03:59947442..59947813+ functional_description:"Os05g0176300 protein (Fragment) (AHRD V1 *-*- C7J2W8_ORYSJ)"; NbS00045515g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.33|1|0.6|0.83|6|0|352; (*GB) gi|224106001|ref|XP_002314008.1| (e_value=2e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY82|FB121_ARATH (e_value=1e-100) F-box protein At2g32560 OS=Arabidopsis thaliana GN=At2g32560 PE=2 SV=1;; (*TAIR) AT2G32560.1 (e_value=1e-101) | Symbols: | F-box family protein | chr2:13824820-13826761 FORWARD LENGTH=371;; (*ITAG) Solyc10g078410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59557930-59559668 transcript_region:SL2.40ch10:59557930..59559668- functional_description:"F-box family protein (AHRD V1 ***- B9GG65_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00045515g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|197; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=1e-108) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-28) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G17700.1 (e_value=1e-61) | Symbols: | MATE efflux family protein | chr5:5831025-5833415 REVERSE LENGTH=497;; (*ITAG) Solyc10g081260.1.1 (e_value=1e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00002169g0018.1 protein AED:0.15 eAED:0.15 QI:310|1|1|1|0.66|0.75|4|1547|757; (*GB) gi|225437495|ref|XP_002269765.1| (e_value=0.0) PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Vitis vinifera];; (*SWP) sp|Q9SY66|FRS11_ARATH (e_value=0.0) Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1;; (*TAIR) AT1G10240.1 (e_value=0.0) | Symbols: FRS11 | FAR1-related sequence 11 | chr1:3356835-3359271 REVERSE LENGTH=680;; (*ITAG) Solyc09g075640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62795924-62799615 transcript_region:SL2.40ch09:62795924..62799615- go_terms:GO:0005737,GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0005737,GO:0008270 NbS00002169g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|193; (*ITAG) Solyc09g075660.2.1 (e_value=1e-38) genomic_reference:SL2.40ch09 gene_region:62805826-62806963 transcript_region:SL2.40ch09:62805826..62806963- functional_description:"Unknown Protein (AHRD V1)"; NbS00002169g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|255548525|ref|XP_002515319.1| (e_value=8e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc09g075630.1.1 (e_value=2e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:62795269-62795544 transcript_region:SL2.40ch09:62795269..62795544+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002169g0016.1 protein AED:0.10 eAED:0.10 QI:109|1|0.5|1|1|1|2|0|108; (*GB) gi|255548521|ref|XP_002515317.1| (e_value=4e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47480.1 (e_value=3e-21) | Symbols: | Protein of unknown function (DUF3511) | chr2:19484207-19484539 REVERSE LENGTH=110;; (*ITAG) Solyc09g075650.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:62804739-62805944 transcript_region:SL2.40ch09:62804739..62805944+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002169g0005.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|225437501|ref|XP_002274824.1| (e_value=8e-56) PREDICTED: uncharacterized protein LOC100245192 [Vitis vinifera];; (*TAIR) AT5G38700.1 (e_value=5e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:15489690-15490238 FORWARD LENGTH=182;; (*ITAG) Solyc01g079660.2.1 (e_value=8e-79) genomic_reference:SL2.40ch01 gene_region:71295004-71295940 transcript_region:SL2.40ch01:71295004..71295940- functional_description:"Long cell-linked locus protein (AHRD V1 ***- Q946U8_MAIZE)"; NbS00002686g0005.1 protein AED:0.51 eAED:0.65 QI:0|0|0|0.66|0.5|0|3|0|88 NbS00002686g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|101; (*GB) gi|57014003|ref|YP_173474.1| (e_value=2e-22) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT1G72000.1 (e_value=3e-14) | Symbols: | Plant neutral invertase family protein | chr1:27103277-27105663 FORWARD LENGTH=499;; (*ITAG) Solyc00g021660.1.1 (e_value=3e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00002686g0006.1 protein AED:0.16 eAED:0.49 QI:0|0|0|1|0|0|6|0|166 NbS00002686g0004.1 protein AED:0.23 eAED:0.28 QI:0|0|0|1|0|0|2|0|73 NbS00002686g0124.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|0|0|2|0|120 NbS00002686g0114.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|189 NbS00002686g0121.1 protein AED:0.18 eAED:0.21 QI:78|0.55|0.52|0.85|0.5|0.52|21|311|993 NbS00002686g0120.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|284 NbS00002686g0128.1 protein AED:0.27 eAED:0.32 QI:0|0|0|0.4|1|0.6|5|0|346 NbS00002686g0110.1 protein AED:0.30 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|100 NbS00002686g0127.1 protein AED:0.47 eAED:0.67 QI:0|0|0|0.75|0|0|4|0|231 NbS00002686g0126.1 protein AED:0.45 eAED:0.53 QI:0|0|0|1|0|0|3|0|137 NbS00002686g0125.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0|2|0|114 NbS00002686g0123.1 protein AED:0.11 eAED:0.30 QI:0|0|0|1|0|0|2|0|93 NbS00018509g0004.1 protein AED:0.13 eAED:0.15 QI:154|0.84|0.85|1|0.89|0.95|20|230|701; (*GB) gi|296087642|emb|CBI34898.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5R5J6|GCP2_PONAB (e_value=9e-124) Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1;; (*TAIR) AT5G17410.1 (e_value=0.0) | Symbols: | Spc97 / Spc98 family of spindle pole body (SBP) component | chr5:5730651-5736415 FORWARD LENGTH=678;; (*ITAG) Solyc02g081460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39994343-40002871 transcript_region:SL2.40ch02:39994343..40002871- go_terms:GO:0051011,GO:0043015 functional_description:"Gamma-tubulin complex component 2 (AHRD V1 **** D6RQU2_COPC7); contains Interpro domain(s) IPR007259 Spc97/Spc98 "; GO:0051011,GO:0043015 NbS00023401g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|277; (*GB) gi|12230584|sp|Q08935.1|ROC1_NICSY (e_value=2e-104) RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName: Full=CP29A; Flags: Precursor;; (*SWP) sp|Q08935|ROC1_NICSY (e_value=6e-106) 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT2G37220.1 (e_value=6e-75) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289;; (*ITAG) Solyc09g007850.2.1 (e_value=6e-90) genomic_reference:SL2.40ch09 gene_region:1377722-1380930 transcript_region:SL2.40ch09:1377722..1380930- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 **-* C6F119_SOYBN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00023401g0008.1 protein AED:0.13 eAED:0.21 QI:87|0.33|0.25|1|0.33|0.25|4|0|267; (*GB) gi|297746274|emb|CBI16330.3| (e_value=1e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SL29|CNG15_ARATH (e_value=1e-92) Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1;; (*TAIR) AT2G28260.1 (e_value=9e-94) | Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678;; (*ITAG) Solyc09g007840.2.1 (e_value=2e-155) genomic_reference:SL2.40ch09 gene_region:1373797-1376961 transcript_region:SL2.40ch09:1373797..1376961- go_terms:GO:0031722,GO:0031721 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0031722,GO:0031721 NbS00023401g0005.1 protein AED:0.39 eAED:0.53 QI:7|0|0|1|0|0.5|2|74|19 NbS00016974g0002.1 protein AED:0.19 eAED:0.19 QI:211|0.5|0.66|1|0|0.33|3|156|255; (*GB) gi|156118328|gb|ABU49725.1| (e_value=2e-87) WRKY transcription factor 6 [Solanum tuberosum];; (*SWP) sp|Q9LY00|WRK70_ARATH (e_value=1e-23) Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1;; (*TAIR) AT3G56400.1 (e_value=9e-25) | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding protein 70 | chr3:20909082-20910409 REVERSE LENGTH=294;; (*ITAG) Solyc09g015770.2.1 (e_value=3e-89) genomic_reference:SL2.40ch09 gene_region:10987958-10989890 transcript_region:SL2.40ch09:10987958..10989890- go_terms:GO:0003700 functional_description:"WRKY transcription factor 6 (AHRD V1 **** A7UGD3_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00016974g0015.1 protein AED:0.19 eAED:0.20 QI:0|0.14|0|1|0.14|0.12|8|0|632; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=0.0) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMN7|WAK5_ARATH (e_value=1e-134) Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1;; (*TAIR) AT1G21230.1 (e_value=1e-135) | Symbols: WAK5 | wall associated kinase 5 | chr1:7429980-7432346 FORWARD LENGTH=733;; (*ITAG) Solyc09g015240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8261516-8264129 transcript_region:SL2.40ch09:8261516..8264129+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00016974g0013.1 protein AED:0.26 eAED:0.26 QI:106|1|1|1|0.5|0.57|7|750|328; (*GB) gi|225439699|ref|XP_002271868.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100243025 [Vitis vinifera];; (*TAIR) AT2G38550.1 (e_value=2e-92) | Symbols: | Transmembrane proteins 14C | chr2:16132178-16134229 FORWARD LENGTH=335;; (*ITAG) Solyc09g015650.2.1 (e_value=3e-153) genomic_reference:SL2.40ch09 gene_region:10580626-10587349 transcript_region:SL2.40ch09:10580626..10587349+ go_terms:GO:0016020,GO:0004867 functional_description:"Non-green plastid inner envelope membrane protein (AHRD V1 ***- Q39364_BRAOL); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020,GO:0004867 NbS00016974g0010.1 protein AED:0.28 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|357; (*GB) gi|357156674|ref|XP_003577537.1| (e_value=7e-108) PREDICTED: acetylajmalan esterase-like [Brachypodium distachyon];; (*SWP) sp|Q8RXT9|GDL8_ARATH (e_value=2e-92) GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2;; (*TAIR) AT1G28590.1 (e_value=2e-93) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc12g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00020922g0006.1 protein AED:0.00 eAED:0.03 QI:0|1|0.5|1|0|0|2|0|149; (*GB) gi|225438539|ref|XP_002275864.1| (e_value=3e-25) PREDICTED: uncharacterized protein LOC100261058 [Vitis vinifera];; (*TAIR) AT5G64820.1 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25913999-25914523 REVERSE LENGTH=145;; (*ITAG) Solyc04g051720.2.1 (e_value=1e-68) genomic_reference:SL2.40ch04 gene_region:50181344-50183153 transcript_region:SL2.40ch04:50181344..50183153- functional_description:"Genomic DNA chromosome 5 P1 clone MXK3 (AHRD V1 ***- Q9LV95_ARATH)"; NbS00020922g0002.1 protein AED:0.01 eAED:0.01 QI:116|1|0.5|1|0|0.5|2|0|126; (*GB) gi|8843745|dbj|BAA97293.1| (e_value=2e-74) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|Q8L8Q8|Y5486_ARATH (e_value=1e-77) Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1;; (*TAIR) AT5G64816.2 (e_value=7e-79) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25913487-25913879 FORWARD LENGTH=130;; (*ITAG) Solyc04g051710.1.1 (e_value=4e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:50180662-50181042 transcript_region:SL2.40ch04:50180662..50181042+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020922g0007.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|7|196|334; (*GB) gi|224096339|ref|XP_002310606.1| (e_value=1e-170) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5J9|Y5483_ARATH (e_value=2e-161) Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis thaliana GN=At5g64813 PE=1 SV=1;; (*TAIR) AT5G64813.1 (e_value=2e-162) | Symbols: LIP1 | Ras-related small GTP-binding family protein | chr5:25910836-25912625 FORWARD LENGTH=342;; (*ITAG) Solyc04g051700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50170666-50177775 transcript_region:SL2.40ch04:50170666..50177775+ go_terms:GO:0003924 functional_description:"Ras-related protein RAB-4 (AHRD V1 *-*- Q26693_TRYBR); contains Interpro domain(s) IPR013684 Miro-like "; GO:0003924 NbS00021317g0010.1 protein AED:0.30 eAED:0.30 QI:303|1|0.6|1|1|1|5|0|432; (*GB) gi|225436904|ref|XP_002274278.1| (e_value=4e-136) PREDICTED: uncharacterized protein LOC100259706 [Vitis vinifera];; (*TAIR) AT4G02920.1 (e_value=2e-72) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1292816-1294670 FORWARD LENGTH=418;; (*ITAG) Solyc09g072990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61150679-61156433 transcript_region:SL2.40ch09:61150679..61156433+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021317g0003.1 protein AED:0.13 eAED:0.15 QI:0|0.8|0.63|1|1|1|11|380|399; (*GB) gi|147784261|emb|CAN61809.1| (e_value=0.0) hypothetical protein VITISV_014296 [Vitis vinifera];; (*SWP) sp|Q9ZT91|EFTM_ARATH (e_value=0.0) Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1;; (*TAIR) AT4G02930.1 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr4:1295751-1298354 REVERSE LENGTH=454;; (*ITAG) Solyc09g073000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61156838-61164570 transcript_region:SL2.40ch09:61156838..61164570- go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** B9SFP0_RICCO); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00049661g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0|1|0.66|0.5|4|0|408; (*GB) gi|336093137|gb|AEI01103.1| (e_value=1e-150) glutathione transferase [Nicotiana benthamiana];; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=8e-119) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=5e-112) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc07g056490.2.1 (e_value=2e-136) genomic_reference:SL2.40ch07 gene_region:61624235-61625888 transcript_region:SL2.40ch07:61624235..61625888- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00049661g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.5|1|0.4|0.33|6|20|373; (*GB) gi|356567743|ref|XP_003552076.1| (e_value=2e-110) PREDICTED: uncharacterized protein LOC100810342 [Glycine max];; (*TAIR) AT2G30900.1 (e_value=6e-101) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61048180-61051087 transcript_region:SL2.40ch07:61048180..61051087+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00049661g0003.1 protein AED:0.47 eAED:0.47 QI:8|-1|0|1|-1|0|1|0|89; (*GB) gi|336093137|gb|AEI01103.1| (e_value=1e-55) glutathione transferase [Nicotiana benthamiana];; (*SWP) sp|P46417|GSTX3_SOYBN (e_value=2e-50) Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1;; (*TAIR) AT1G17170.1 (e_value=7e-46) | Symbols: ATGSTU24, GST, GSTU24 | glutathione S-transferase TAU 24 | chr1:5869895-5870691 FORWARD LENGTH=218;; (*ITAG) Solyc07g056500.2.1 (e_value=3e-52) genomic_reference:SL2.40ch07 gene_region:61628566-61630043 transcript_region:SL2.40ch07:61628566..61630043- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00029780g0017.1 protein AED:0.23 eAED:0.23 QI:198|1|1|1|0.57|0.62|8|269|248; (*GB) gi|359473789|ref|XP_002265030.2| (e_value=9e-115) PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ASS6|CP20B_ARATH (e_value=8e-104) Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1;; (*TAIR) AT5G13120.2 (e_value=4e-105) | Symbols: CYP20-2 | cyclophilin 20-2 | chr5:4162714-4164720 REVERSE LENGTH=255;; (*ITAG) Solyc01g009990.2.1 (e_value=4e-135) genomic_reference:SL2.40ch01 gene_region:4594127-4598093 transcript_region:SL2.40ch01:4594127..4598093+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B9RMA5_RICCO); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00029780g0018.1 protein AED:0.46 eAED:0.55 QI:0|0.4|0.16|1|0.6|0.33|6|0|250; (*GB) gi|255547634|ref|XP_002514874.1| (e_value=5e-99) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|Q9ASS6|CP20B_ARATH (e_value=2e-94) Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1;; (*TAIR) AT5G13120.2 (e_value=1e-95) | Symbols: CYP20-2 | cyclophilin 20-2 | chr5:4162714-4164720 REVERSE LENGTH=255;; (*ITAG) Solyc01g009990.2.1 (e_value=3e-105) genomic_reference:SL2.40ch01 gene_region:4594127-4598093 transcript_region:SL2.40ch01:4594127..4598093+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B9RMA5_RICCO); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00037699g0017.1 protein AED:0.09 eAED:0.09 QI:36|0.71|0.62|1|0.28|0.37|8|75|427; (*GB) gi|118488472|gb|ABK96050.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=0.0) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=0.0) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc02g089130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45589633-45591730 transcript_region:SL2.40ch02:45589633..45591730- functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00037699g0018.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.5|0.83|0.6|0.83|6|413|320; (*GB) gi|90657630|gb|ABD96928.1| (e_value=2e-172) hypothetical protein [Cleome spinosa];; (*SWP) sp|Q8BGF9|S2544_MOUSE (e_value=2e-45) Solute carrier family 25 member 44 OS=Mus musculus GN=Slc25a44 PE=2 SV=1;; (*TAIR) AT5G15640.1 (e_value=2e-168) | Symbols: | Mitochondrial substrate carrier family protein | chr5:5087590-5089677 FORWARD LENGTH=323;; (*ITAG) Solyc02g089110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45578133-45582210 transcript_region:SL2.40ch02:45578133..45582210- go_terms:GO:0022857 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- Q69FA0_PHAVU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0022857 NbS00037699g0016.1 protein AED:0.22 eAED:0.22 QI:39|0.83|0.71|1|0.66|0.85|7|0|211; (*GB) gi|90657631|gb|ABD96929.1| (e_value=2e-62) hypothetical protein [Cleome spinosa];; (*TAIR) AT3G02220.1 (e_value=4e-53) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:412210-413536 REVERSE LENGTH=227;; (*ITAG) Solyc02g089100.2.1 (e_value=4e-86) genomic_reference:SL2.40ch02 gene_region:45574034-45577409 transcript_region:SL2.40ch02:45574034..45577409+ functional_description:"C9orf85 homolog (AHRD V1 *-*- C1BVG8_9MAXI); contains Interpro domain(s) IPR019351 Protein of unknown function DUF2039 "; NbS00037699g0012.1 protein AED:0.26 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|158; (*GB) gi|225447669|ref|XP_002275606.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100264828 [Vitis vinifera];; (*ITAG) Solyc07g063640.1.1 (e_value=6e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63280045-63280344 transcript_region:SL2.40ch07:63280045..63280344- functional_description:"Wound induced protein (AHRD V1 ***- B6SKC8_MAIZE)"; NbS00037699g0005.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.33|1|1|3|0|167; (*GB) gi|150409150|gb|ABR68652.1| (e_value=4e-43) Pto resistance protein candidate Tg-67, partial [Musa acuminata];; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=3e-40) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=2e-41) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc02g089090.2.1 (e_value=3e-49) genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00010870g0003.1 protein AED:0.20 eAED:0.26 QI:0|0.77|0.65|1|0.59|0.78|23|0|1034; (*GB) gi|225455886|ref|XP_002275529.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254135 isoform 1 [Vitis vinifera];; (*SWP) sp|Q3U1Y4|DEN4B_MOUSE (e_value=1e-29) DENN domain-containing protein 4B OS=Mus musculus GN=Dennd4b PE=2 SV=2;; (*TAIR) AT1G49040.3 (e_value=0.0) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18140457-18148826 REVERSE LENGTH=1040;; (*ITAG) Solyc03g119650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00017836g0017.1 protein AED:0.56 eAED:0.56 QI:0|0.61|0.57|0.71|0.84|0.92|14|0|346; (*GB) gi|296089689|emb|CBI39508.3| (e_value=1e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=7e-64) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G09140.1 (e_value=3e-66) | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268;; (*ITAG) Solyc01g099810.2.1 (e_value=3e-84) genomic_reference:SL2.40ch01 gene_region:81709617-81716769 transcript_region:SL2.40ch01:81709617..81716769- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0050733 NbS00017836g0016.1 protein AED:0.01 eAED:0.01 QI:0|0.8|0.5|1|0.4|0.33|6|0|433; (*GB) gi|225450795|ref|XP_002279542.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251003 [Vitis vinifera];; (*TAIR) AT3G05545.1 (e_value=2e-90) | Symbols: | RING/U-box superfamily protein | chr3:1609436-1612133 FORWARD LENGTH=425;; (*ITAG) Solyc01g099790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81694836-81702099 transcript_region:SL2.40ch01:81694836..81702099+ go_terms:GO:0003677,GO:0004842 functional_description:"AT3G05545 protein (Fragment) (AHRD V1 ***- B9DHH4_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0003677,GO:0004842 NbS00017836g0015.1 protein AED:0.32 eAED:0.32 QI:153|1|1|1|1|1|2|246|125; (*GB) gi|225431737|ref|XP_002268941.1| (e_value=5e-53) PREDICTED: 60S ribosomal protein L22-2 [Vitis vinifera];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=1e-51) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=8e-53) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc01g099830.2.1 (e_value=3e-57) genomic_reference:SL2.40ch01 gene_region:81721206-81723201 transcript_region:SL2.40ch01:81721206..81723201+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00054121g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|102|665; (*GB) gi|225464208|ref|XP_002264706.1| (e_value=0.0) PREDICTED: putative kinase-like protein TMKL1-like [Vitis vinifera];; (*SWP) sp|P33543|TMKL1_ARATH (e_value=0.0) Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1;; (*TAIR) AT3G24660.1 (e_value=0.0) | Symbols: TMKL1 | transmembrane kinase-like 1 | chr3:9003641-9005751 FORWARD LENGTH=674;; (*ITAG) Solyc09g061930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56299247-56302802 transcript_region:SL2.40ch09:56299247..56302802- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00032377g0005.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0.5|2|0|485; (*GB) gi|225445535|ref|XP_002282211.1| (e_value=2e-127) PREDICTED: equilibrative nucleoside transporter 4-like [Vitis vinifera];; (*SWP) sp|A1L272|S29A4_DANRE (e_value=7e-16) Equilibrative nucleoside transporter 4 OS=Danio rerio GN=slc29a4 PE=2 SV=1;; (*TAIR) AT1G02630.1 (e_value=5e-113) | Symbols: | Nucleoside transporter family protein | chr1:561007-562382 REVERSE LENGTH=389;; (*ITAG) Solyc07g008200.2.1 (e_value=6e-153) genomic_reference:SL2.40ch07 gene_region:2944383-2946680 transcript_region:SL2.40ch07:2944383..2946680+ go_terms:GO:0010174 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9HAJ2_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0010174 NbS00002843g0006.1 protein AED:0.00 eAED:0.00 QI:240|1|1|1|1|1|2|724|368; (*GB) gi|350535124|ref|NP_001234689.1| (e_value=1e-75) dehydration responsive element binding protein [Solanum lycopersicum];; (*SWP) sp|O82132|DRE2A_ARATH (e_value=4e-34) Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1;; (*TAIR) AT5G05410.1 (e_value=3e-35) | Symbols: DREB2A, DREB2 | DRE-binding protein 2A | chr5:1602650-1603657 FORWARD LENGTH=335;; (*ITAG) Solyc06g050520.1.1 (e_value=3e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:29703325-29704227 transcript_region:SL2.40ch06:29703325..29704227- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00002843g0007.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|75; (*GB) gi|225456138|ref|XP_002282075.1| (e_value=4e-13) PREDICTED: calcium-binding allergen Ole e 8 [Vitis vinifera];; (*ITAG) Solyc03g118810.1.1 (e_value=3e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:61676281-61676775 transcript_region:SL2.40ch03:61676281..61676775+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D8TKN5_VOLCA); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbC25462243g0001.1 protein AED:0.29 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|225435472|ref|XP_002285474.1| (e_value=3e-52) PREDICTED: xanthine dehydrogenase/oxidase-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=9e-40) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=7e-41) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=1e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00047473g0005.1 protein AED:0.13 eAED:0.13 QI:312|1|0.90|1|0.9|0.90|11|0|651; (*GB) gi|356544157|ref|XP_003540521.1| (e_value=0.0) PREDICTED: SUMO-activating enzyme subunit 2-like [Glycine max];; (*SWP) sp|Q9SJT1|SAE2_ARATH (e_value=0.0) SUMO-activating enzyme subunit 2 OS=Arabidopsis thaliana GN=SAE2 PE=1 SV=1;; (*TAIR) AT2G21470.1 (e_value=0.0) | Symbols: SAE2, ATSAE2, EMB2764 | SUMO-activating enzyme 2 | chr2:9198752-9202136 FORWARD LENGTH=625;; (*ITAG) Solyc01g109960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88537753-88546575 transcript_region:SL2.40ch01:88537753..88546575- go_terms:GO:0019948 functional_description:"Ubiquitin-activating enzyme E1 3 (AHRD V1 **** B2VT99_PYRTR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019948 NbS00017029g0003.1 protein AED:0.16 eAED:0.16 QI:146|1|1|1|0|0.25|8|390|332; (*GB) gi|225440914|ref|XP_002282860.1| (e_value=3e-131) PREDICTED: CAAX prenyl protease 2 [Vitis vinifera];; (*SWP) sp|Q8GW19|FACE2_ARATH (e_value=2e-106) CAAX prenyl protease 2 OS=Arabidopsis thaliana GN=FACE2 PE=2 SV=2;; (*TAIR) AT2G36305.1 (e_value=2e-107) | Symbols: RCE1, ATFACE-2, ATFACE2, FACE2 | farnesylated protein-converting enzyme 2 | chr2:15214607-15216449 FORWARD LENGTH=311;; (*ITAG) Solyc09g009630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3041741-3049141 transcript_region:SL2.40ch09:3041741..3049141- go_terms:GO:0004222 functional_description:"CAAX prenyl protease 2 (AHRD V1 ***- B6TS29_MAIZE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0004222 NbS00015826g0003.1 protein AED:0.10 eAED:0.10 QI:148|1|1|1|0.91|1|13|940|435; (*GB) gi|225428556|ref|XP_002284627.1| (e_value=0.0) PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [Vitis vinifera];; (*SWP) sp|Q6NYS8|OST48_DANRE (e_value=2e-133) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit OS=Danio rerio GN=ddost PE=2 SV=2;; (*TAIR) AT5G66680.1 (e_value=0.0) | Symbols: DGL1 | dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein | chr5:26617840-26620581 REVERSE LENGTH=437;; (*ITAG) Solyc01g109410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88132748-88140649 transcript_region:SL2.40ch01:88132748..88140649- go_terms:GO:0005515 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (AHRD V1 ***- C1C2G2_9MAXI); contains Interpro domain(s) IPR005013 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit "; GO:0005515 NbS00031776g0002.1 protein AED:0.19 eAED:0.20 QI:0|1|0|1|0|0.5|2|0|156; (*GB) gi|365818539|gb|AEX00358.1| (e_value=1e-51) IAA15 [Solanum lycopersicum];; (*SWP) sp|P93830|IAA17_ARATH (e_value=5e-25) Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2;; (*TAIR) AT1G04250.1 (e_value=4e-26) | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229;; (*ITAG) Solyc03g120390.2.1 (e_value=3e-54) genomic_reference:SL2.40ch03 gene_region:62863354-62864903 transcript_region:SL2.40ch03:62863354..62864903+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00044290g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.16|0|1|0.5|0.28|7|0|315; (*GB) gi|293651999|pdb|3LZ9|A (e_value=6e-137) Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha;; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=4e-138) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.2 (e_value=4e-30) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101170.2.1 (e_value=1e-106) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00044290g0011.1 protein AED:0.32 eAED:0.32 QI:14|1|1|1|0|0|2|478|91; (*GB) gi|10444007|gb|AAG17667.1|AF272244_1 (e_value=1e-28) 5-epi-aristolochene synthase, partial [Nicotiana tabacum];; (*SWP) sp|Q84LG0|5EAS4_NICAT (e_value=7e-30) Probable 5-epi-aristolochene synthase 4 OS=Nicotiana attenuata PE=2 SV=1;; (*ITAG) Solyc01g101170.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00044290g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.33|0|1|0.33|0.25|4|0|186; (*GB) gi|251821343|emb|CAR92134.1| (e_value=2e-67) 5-epi-aristolochene synthase [Nicotiana plumbaginifolia];; (*SWP) sp|Q84LF1|5EAS1_NICAT (e_value=1e-63) 5-epi-aristolochene synthase 1 OS=Nicotiana attenuata GN=EAS PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=6e-31) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101210.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00044290g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|1620988|emb|CAA70071.1| (e_value=2e-50) 5-epi-aristolochene synthase [Nicotiana tabacum];; (*SWP) sp|Q84LF2|5EAS3_NICAT (e_value=1e-46) 5-epi-aristolochene synthase 3 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT5G23960.1 (e_value=6e-13) | Symbols: ATTPS21, TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=547;; (*ITAG) Solyc01g101210.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00044290g0012.1 protein AED:0.46 eAED:0.54 QI:0|0|0|1|0|0|2|0|59; (*GB) gi|32328283|gb|AAP79448.1| (e_value=5e-20) epi-arisotolchene synthase 110 [Nicotiana tabacum];; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=2e-21) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1; NbS00046084g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.88|0.9|0.9|1|1|10|229|428; (*GB) gi|255584858|ref|XP_002533145.1| (e_value=0.0) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q5HZ05|TPPJ_ARATH (e_value=7e-162) Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1;; (*TAIR) AT5G65140.1 (e_value=5e-163) | Symbols: TPPJ | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:26019878-26022077 REVERSE LENGTH=370;; (*ITAG) Solyc04g054930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52586264-52589099 transcript_region:SL2.40ch04:52586264..52589099- go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose-6-phosphate phosphatase-like protein (AHRD V1 ***- Q9LX18_ARATH); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00044848g0009.1 protein AED:0.18 eAED:0.18 QI:194|1|0.90|1|1|0.90|11|0|933; (*GB) gi|350535989|ref|NP_001234480.1| (e_value=0.0) ribonuclease E [Solanum lycopersicum];; (*SWP) sp|P45175|RNG_HAEIN (e_value=2e-53) Ribonuclease G OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rng PE=3 SV=1;; (*TAIR) AT2G04270.2 (e_value=0.0) | Symbols: RNEE/G | RNAse E/G-like | chr2:1475753-1480014 FORWARD LENGTH=871;; (*ITAG) Solyc02g083140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41224359-41230390 transcript_region:SL2.40ch02:41224359..41230390+ go_terms:GO:0004521 functional_description:"Ribonuclease E (AHRD V1 ***- B0LV36_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site "; GO:0004521 NbS00044848g0010.1 protein AED:0.45 eAED:0.45 QI:231|0.66|0.5|1|1|1|4|0|92; (*GB) gi|356538355|ref|XP_003537669.1| (e_value=9e-18) PREDICTED: probable S-acyltransferase At3g51390-like [Glycine max];; (*TAIR) AT3G51390.1 (e_value=4e-14) | Symbols: | DHHC-type zinc finger family protein | chr3:19075718-19077966 FORWARD LENGTH=340;; (*ITAG) Solyc02g083150.2.1 (e_value=9e-39) genomic_reference:SL2.40ch02 gene_region:41231665-41238118 transcript_region:SL2.40ch02:41231665..41238118- go_terms:GO:0008270 functional_description:"Palmitoyltransferase (AHRD V1 *-*- C1FD39_9CHLO); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00044848g0007.1 protein AED:0.46 eAED:0.46 QI:0|0.66|0.25|1|0.33|0.5|4|0|173; (*ITAG) Solyc02g083150.2.1 (e_value=5e-39) genomic_reference:SL2.40ch02 gene_region:41231665-41238118 transcript_region:SL2.40ch02:41231665..41238118- go_terms:GO:0008270 functional_description:"Palmitoyltransferase (AHRD V1 *-*- C1FD39_9CHLO); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00019318g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|0.75|1|0.5|4|0|247; (*GB) gi|359484894|ref|XP_003633181.1| (e_value=3e-157) PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=1e-142) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.1 (e_value=2e-135) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780;; (*ITAG) Solyc07g005810.2.1 (e_value=8e-170) genomic_reference:SL2.40ch07 gene_region:648580-654196 transcript_region:SL2.40ch07:648580..654196- go_terms:GO:0003723 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0003723 NbS00019318g0004.1 protein AED:0.61 eAED:0.73 QI:88|0.5|0|1|1|0.66|3|0|89 NbS00032979g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|89; (*GB) gi|19320|emb|CAA42537.1| (e_value=3e-19) wound induced protein [Solanum lycopersicum];; (*ITAG) Solyc07g054780.1.1 (e_value=4e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60307568-60307819 transcript_region:SL2.40ch07:60307568..60307819- functional_description:"Wound induced protein (AHRD V1 ***- B6T0U0_MAIZE)"; NbS00015930g0014.1 protein AED:0.16 eAED:0.17 QI:24|0.83|0.76|1|0.83|0.84|13|624|826; (*GB) gi|359476152|ref|XP_002282819.2| (e_value=5e-130) PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera];; (*SWP) sp|Q5U241|PD5BB_XENLA (e_value=9e-18) Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2;; (*TAIR) AT4G31880.1 (e_value=8e-87) | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873;; (*ITAG) Solyc06g065710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00015930g0006.1 protein AED:0.60 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|69 NbS00015930g0015.1 protein AED:0.21 eAED:0.22 QI:0|0.84|0.85|1|0.84|0.85|20|428|724; (*GB) gi|359475836|ref|XP_003631761.1| (e_value=0.0) PREDICTED: transcription initiation factor TFIID subunit 5-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8C092|TAF5_MOUSE (e_value=5e-104) Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1;; (*TAIR) AT5G25150.1 (e_value=0.0) | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669;; (*ITAG) Solyc06g065700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37513230-37528758 transcript_region:SL2.40ch06:37513230..37528758+ go_terms:GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 **-* C5M2X1_CANTT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003700 NbS00020262g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0.5|1|3|0|445; (*GB) gi|225425182|ref|XP_002264325.1| (e_value=6e-143) PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=3e-134) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=2e-135) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc04g009000.1.1 (e_value=1e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2579236-2581365 transcript_region:SL2.40ch04:2579236..2581365- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00020262g0013.1 protein AED:0.30 eAED:0.30 QI:37|1|0.8|1|0.5|0.6|5|0|363; (*GB) gi|297742760|emb|CBI35394.3| (e_value=5e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G08340.1 (e_value=2e-123) | Symbols: | Nucleotidylyl transferase superfamily protein | chr5:2683901-2685604 FORWARD LENGTH=367;; (*ITAG) Solyc04g008990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2573083-2578353 transcript_region:SL2.40ch04:2573083..2578353- go_terms:GO:0005515,GO:0008531 functional_description:"Riboflavin biosynthesis protein RibF (AHRD V1 *-** B1BWX1_CLOPE); contains Interpro domain(s) IPR014729 Rossmann-like alpha/beta/alpha sandwich fold "; GO:0005515,GO:0008531 NbS00020262g0006.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|85 NbS00012162g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.87|1|0.71|0.75|8|179|281; (*GB) gi|225429402|ref|XP_002275382.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase Aurora-1 [Vitis vinifera];; (*SWP) sp|Q683C9|AUR2_ARATH (e_value=0.0) Serine/threonine-protein kinase Aurora-2 OS=Arabidopsis thaliana GN=AUR2 PE=2 SV=2;; (*TAIR) AT2G25880.1 (e_value=0.0) | Symbols: AtAUR2, AUR2 | ataurora2 | chr2:11034887-11036827 REVERSE LENGTH=288;; (*ITAG) Solyc12g095870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63323065-63326198 transcript_region:SL2.40ch12:63323065..63326198+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 6 (AHRD V1 ***- B5X2V6_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012162g0010.1 protein AED:0.19 eAED:0.21 QI:320|0.83|0.92|1|0.75|0.84|13|502|439; (*GB) gi|356507939|ref|XP_003522720.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Glycine max];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc12g095880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63327094-63335562 transcript_region:SL2.40ch12:63327094..63335562- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00022524g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|1|1|4|681|129; (*GB) gi|224109570|ref|XP_002333234.1| (e_value=3e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VA3|CYC6_ARATH (e_value=1e-60) Cytochrome c6, chloroplastic OS=Arabidopsis thaliana GN=petJ PE=1 SV=1;; (*TAIR) AT5G45040.1 (e_value=1e-61) | Symbols: | Cytochrome c | chr5:18175566-18176851 REVERSE LENGTH=175;; (*ITAG) Solyc02g068930.2.1 (e_value=5e-70) genomic_reference:SL2.40ch02 gene_region:33403771-33408543 transcript_region:SL2.40ch02:33403771..33408543- go_terms:GO:0020037 functional_description:"Cytochrome c6 (AHRD V1 ***- D7MKY9_ARALY); contains Interpro domain(s) IPR003088 Cytochrome c, class I "; GO:0020037 NbS00022524g0008.1 protein AED:0.47 eAED:0.81 QI:0|0.5|0|1|0.5|0.66|3|0|77 NbS00025388g0012.1 protein AED:0.00 eAED:0.00 QI:291|1|1|1|1|1|2|327|59 NbS00025388g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=2e-30) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=2e-30) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=1e-31) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g053110.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50860076-50860384 transcript_region:SL2.40ch04:50860076..50860384+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00025388g0001.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|78 NbS00025388g0014.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.5|1|0.5|2|0|127 NbS00025388g0018.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|108; (*ITAG) Solyc03g043630.1.1 (e_value=3e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11072691-11072858 transcript_region:SL2.40ch03:11072691..11072858- functional_description:"Unknown Protein (AHRD V1)"; NbS00025388g0017.1 protein AED:0.38 eAED:0.62 QI:0|0|0|1|0|0|7|0|265; (*GB) gi|57014013|ref|YP_173484.1| (e_value=9e-37) hypothetical protein NitaMp147 [Nicotiana tabacum];; (*ITAG) Solyc00g022100.1.1 (e_value=4e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00049797g0004.1 protein AED:0.16 eAED:0.16 QI:256|0.55|0.8|1|0.44|0.6|10|109|276; (*GB) gi|357510327|ref|XP_003625452.1| (e_value=1e-78) Sugar kinase, putative [Medicago truncatula];; (*TAIR) AT4G28706.4 (e_value=2e-67) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:14167805-14172254 FORWARD LENGTH=440;; (*ITAG) Solyc08g078370.2.1 (e_value=2e-111) genomic_reference:SL2.40ch08 gene_region:59360722-59365482 transcript_region:SL2.40ch08:59360722..59365482- go_terms:GO:0005515 functional_description:"Kinase pfkB family protein (AHRD V1 **-- Q7XDM4_ORYSJ); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00049797g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|181; (*ITAG) Solyc08g078360.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59352176-59352790 transcript_region:SL2.40ch08:59352176..59352790- functional_description:"Unknown Protein (AHRD V1)"; NbS00042602g0109.1 protein AED:0.14 eAED:0.14 QI:75|0.6|0.33|1|0.4|0.5|6|0|510 NbS00042602g0103.1 protein AED:0.31 eAED:0.31 QI:0|0.6|0.66|1|0.6|0.5|6|810|145 NbS00017599g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|342; (*GB) gi|359478029|ref|XP_002264970.2| (e_value=0.0) PREDICTED: DNA topoisomerase 3-beta-1-like [Vitis vinifera];; (*SWP) sp|Q9Z321|TOP3B_MOUSE (e_value=3e-121) DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1;; (*TAIR) AT2G32000.1 (e_value=0.0) | Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621563 REVERSE LENGTH=865;; (*ITAG) Solyc09g097880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67148650-67159633 transcript_region:SL2.40ch09:67148650..67159633+ go_terms:GO:0003917,GO:0005515 functional_description:"DNA topoisomerase (AHRD V1 **** B9RRL8_RICCO); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0003917,GO:0005515 NbS00020690g0012.1 protein AED:0.33 eAED:0.33 QI:295|0.90|1|1|0.81|0.75|12|403|450; (*GB) gi|225430021|ref|XP_002284175.1| (e_value=2e-179) PREDICTED: uncharacterized protein LOC100267889 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=2e-153) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc08g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54597447-54603198 transcript_region:SL2.40ch08:54597447..54603198+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00020690g0011.1 protein AED:0.41 eAED:0.41 QI:168|1|0.83|1|1|1|6|0|215; (*GB) gi|255551042|ref|XP_002516569.1| (e_value=1e-123) Coiled-coil domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q3SZX8|CCD25_BOVIN (e_value=6e-74) Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1;; (*TAIR) AT5G11500.1 (e_value=8e-125) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3676747-3678946 FORWARD LENGTH=215;; (*ITAG) Solyc08g068300.2.1 (e_value=6e-137) genomic_reference:SL2.40ch08 gene_region:54605786-54613571 transcript_region:SL2.40ch08:54605786..54613571+ go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 25 (AHRD V1 ***- B4G0U8_MAIZE); contains Interpro domain(s) IPR008532 Protein of unknown function DUF814 "; GO:0005515 NbS00021830g0008.1 protein AED:0.14 eAED:0.15 QI:25|0.5|0.4|1|0.5|0.4|5|209|761; (*GB) gi|297746086|emb|CBI16142.3| (e_value=7e-75) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02390.1 (e_value=2e-32) | Symbols: | Protein of unknown function (DUF3741) | chr5:508764-511710 REVERSE LENGTH=835;; (*ITAG) Solyc06g076130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43659893-43662466 transcript_region:SL2.40ch06:43659893..43662466+ go_terms:GO:0005975 functional_description:"Unknown Protein (AHRD V1)"; GO:0005975 NbS00021615g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|156763854|emb|CAO99129.1| (e_value=1e-86) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT1G24480.1 (e_value=1e-75) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8676440-8677159 REVERSE LENGTH=239;; (*ITAG) Solyc05g014120.1.1 (e_value=2e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:7818234-7818977 transcript_region:SL2.40ch05:7818234..7818977+ go_terms:GO:0008152 functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00021615g0015.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|213; (*GB) gi|356528428|ref|XP_003532805.1| (e_value=1e-86) PREDICTED: inactive hydroxysteroid dehydrogenase-like protein 1-like [Glycine max];; (*SWP) sp|Q1DNC5|MKAR_COCIM (e_value=2e-40) 3-ketoacyl-CoA reductase OS=Coccidioides immitis (strain RS) GN=CIMG_08188 PE=3 SV=2;; (*TAIR) AT1G67730.1 (e_value=1e-76) | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318;; (*ITAG) Solyc05g014150.2.1 (e_value=2e-110) genomic_reference:SL2.40ch05 gene_region:7870276-7871196 transcript_region:SL2.40ch05:7870276..7871196- go_terms:GO:0045703 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 **-- DHRS7_MOUSE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0045703 NbS00021615g0017.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|1202; (*ITAG) Solyc05g014130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7825077-7831106 transcript_region:SL2.40ch05:7825077..7831106- functional_description:"COP1-interacting protein 4 (AHRD V1 *--- Q9C5U5_ARATH)"; NbS00021615g0019.1 protein AED:0.33 eAED:0.33 QI:328|0.88|0.8|1|0.44|0.3|10|445|436; (*GB) gi|225425938|ref|XP_002267857.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247607 [Vitis vinifera];; (*TAIR) AT3G26090.1 (e_value=0.0) | Symbols: RGS1, ATRGS1 | G-protein coupled receptors;GTPase activators | chr3:9532883-9535410 FORWARD LENGTH=459;; (*ITAG) Solyc05g014160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7895688-7906289 transcript_region:SL2.40ch05:7895688..7906289- go_terms:GO:0005515,GO:0004930 functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 **-- Q9LU81_ARATH); contains Interpro domain(s) IPR000342 Regulator of G protein signalling "; GO:0005515,GO:0004930 NbS00019893g0004.1 protein AED:0.29 eAED:0.33 QI:0|0|0.2|1|0.5|0.8|5|510|367; (*GB) gi|225432504|ref|XP_002279548.1| (e_value=6e-131) PREDICTED: BTB/POZ and MATH domain-containing protein 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M8J9|BPM2_ARATH (e_value=4e-121) BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1;; (*TAIR) AT3G06190.1 (e_value=3e-122) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406;; (*ITAG) Solyc01g080250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71983066-71992106 transcript_region:SL2.40ch01:71983066..71992106- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00016811g0003.1 protein AED:0.20 eAED:0.20 QI:75|1|1|1|1|1|5|187|396; (*GB) gi|225456934|ref|XP_002281408.1| (e_value=9e-166) PREDICTED: tryptophan aminotransferase-related protein 2 [Vitis vinifera];; (*SWP) sp|Q9S7N2|TAA1_ARATH (e_value=3e-156) Tryptophan aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1;; (*TAIR) AT1G70560.1 (e_value=3e-157) | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotransferase of Arabidopsis 1 | chr1:26604894-26607319 FORWARD LENGTH=391;; (*ITAG) Solyc05g031600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:42392657-42394964 transcript_region:SL2.40ch05:42392657..42394964+ go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- Q94EJ8_ALLFI); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00013108g0003.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|388514861|gb|AFK45492.1| (e_value=3e-31) unknown [Lotus japonicus];; (*ITAG) Solyc06g054470.1.1 (e_value=3e-53) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33725929-33726480 transcript_region:SL2.40ch06:33725929..33726480- functional_description:"Unknown Protein (AHRD V1)"; NbS00013108g0018.1 protein AED:0.09 eAED:0.10 QI:0|1|0.85|1|1|1|7|0|294; (*GB) gi|215490181|dbj|BAG86624.1| (e_value=0.0) type 2 proly 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P54001|P4HA1_RAT (e_value=2e-31) Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2;; (*TAIR) AT5G18900.1 (e_value=3e-155) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6304409-6306166 REVERSE LENGTH=298;; (*ITAG) Solyc06g054490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33736610-33739525 transcript_region:SL2.40ch06:33736610..33739525+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q8LAN3_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00013108g0022.1 protein AED:0.19 eAED:0.20 QI:0|0.55|0.2|0.9|0.44|0.6|10|0|488; (*GB) gi|357447557|ref|XP_003594054.1| (e_value=7e-127) Somatic embryogenesis receptor kinase [Medicago truncatula];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=1e-103) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G18910.1 (e_value=1e-122) | Symbols: | Protein kinase superfamily protein | chr5:6306994-6309396 REVERSE LENGTH=511;; (*ITAG) Solyc06g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33729298-33732840 transcript_region:SL2.40ch06:33729298..33732840+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013108g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|1|1|3|0|255; (*GB) gi|225432472|ref|XP_002277316.1| (e_value=1e-116) PREDICTED: S-adenosylmethionine decarboxylase proenzyme [Vitis vinifera];; (*SWP) sp|O65354|DCAM_HELAN (e_value=2e-58) S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1;; (*TAIR) AT5G18930.1 (e_value=4e-95) | Symbols: BUD2, SAMDC4 | Adenosylmethionine decarboxylase family protein | chr5:6312172-6313215 REVERSE LENGTH=347;; (*ITAG) Solyc06g054460.1.1 (e_value=3e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33715579-33716595 transcript_region:SL2.40ch06:33715579..33716595- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00013108g0020.1 protein AED:0.24 eAED:0.24 QI:327|1|0.87|1|0.71|0.75|8|0|609; (*GB) gi|359477463|ref|XP_002279087.2| (e_value=0.0) PREDICTED: F-box/LRR-repeat protein 4-like [Vitis vinifera];; (*SWP) sp|Q9C5D2|FBL4_ARATH (e_value=0.0) F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1;; (*TAIR) AT4G15475.1 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr4:8845927-8848701 FORWARD LENGTH=610;; (*ITAG) Solyc06g054440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33700999-33706694 transcript_region:SL2.40ch06:33700999..33706694+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00006792g0101.1 protein AED:0.00 eAED:0.00 QI:138|1|0.5|1|0|0|2|0|194 NbS00006792g0118.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0.66|0.75|4|0|331 NbS00006792g0117.1 protein AED:0.22 eAED:0.22 QI:357|1|1|1|0.87|0.88|9|291|400 NbS00006792g0116.1 protein AED:0.26 eAED:0.26 QI:397|1|1|1|0.87|0.77|9|305|434 NbS00034940g0008.1 protein AED:0.09 eAED:0.09 QI:358|1|1|1|1|1|4|522|431; (*GB) gi|225452656|ref|XP_002282083.1| (e_value=0.0) PREDICTED: xylosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9EPI1|XYLT1_RAT (e_value=3e-19) Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1;; (*TAIR) AT5G15050.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc02g087550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44534583-44538659 transcript_region:SL2.40ch02:44534583..44538659- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 (AHRD V1 *--* GCNT4_DANRE); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00034940g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|224135677|ref|XP_002322133.1| (e_value=5e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40000.1 (e_value=9e-35) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:16011072-16012484 REVERSE LENGTH=470;; (*ITAG) Solyc02g087540.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44517202-44518761 transcript_region:SL2.40ch02:44517202..44518761- go_terms:GO:0016887 functional_description:"Cell division AAA ATPase family protein (AHRD V1 **-* B6Z265_WHEAT); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00051080g0003.1 protein AED:0.12 eAED:0.16 QI:21|0.33|0|0.75|0.33|0|4|0|185; (*GB) gi|297741277|emb|CBI32408.3| (e_value=2e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJK3|LAG12_ARATH (e_value=1e-85) LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1;; (*TAIR) AT3G19260.1 (e_value=8e-87) | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 | chr3:6669448-6671257 REVERSE LENGTH=296;; (*ITAG) Solyc01g108230.2.1 (e_value=4e-104) genomic_reference:SL2.40ch01 gene_region:87342405-87350641 transcript_region:SL2.40ch01:87342405..87350641+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00029630g0012.1 protein AED:0.22 eAED:0.26 QI:0|0.9|0.90|1|0.8|0.81|11|560|423; (*GB) gi|296082805|emb|CBI21810.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39199|RECAC_ARATH (e_value=0.0) DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana GN=RECA PE=2 SV=1;; (*TAIR) AT1G79050.1 (e_value=0.0) | Symbols: | recA DNA recombination family protein | chr1:29737084-29740140 REVERSE LENGTH=439;; (*ITAG) Solyc07g066320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65011318-65015928 transcript_region:SL2.40ch07:65011318..65015928- go_terms:GO:0003677 functional_description:"Protein recA (AHRD V1 ***- B6T788_MAIZE); contains Interpro domain(s) IPR013765 RecA "; GO:0003677 NbS00029630g0016.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|0.33|0.5|4|21|491; (*GB) gi|297743770|emb|CBI36653.3| (e_value=3e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05950.1 (e_value=6e-58) | Symbols: | unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:1804573-1807471 REVERSE LENGTH=627;; (*ITAG) Solyc07g066300.2.1 (e_value=2e-120) genomic_reference:SL2.40ch07 gene_region:64998856-65007477 transcript_region:SL2.40ch07:64998856..65007477+ functional_description:"Aleurone layer morphogenesis protein (AHRD V1 *-*- Q7XZV4_ORYSJ)"; NbS00029630g0003.1 protein AED:0.45 eAED:0.55 QI:0|0.66|0.25|1|1|1|4|0|82; (*GB) gi|3914472|sp|Q40519.1|PSBR_TOBAC (e_value=2e-38) RecName: Full=Photosystem II 10 kDa polypeptide, chloroplastic; Short=PII10; Flags: Precursor;; (*SWP) sp|Q40519|PSBR_TOBAC (e_value=4e-40) Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1;; (*TAIR) AT1G79040.1 (e_value=2e-32) | Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140;; (*ITAG) Solyc07g066310.2.1 (e_value=1e-40) genomic_reference:SL2.40ch07 gene_region:65009418-65011119 transcript_region:SL2.40ch07:65009418..65011119+ go_terms:GO:0042651 functional_description:"photosystem II polypeptide (AHRD V1 ***- Q6V7X5_TRIPR); contains Interpro domain(s) IPR006814 Photosystem II protein PsbR "; GO:0042651 NbS00029630g0010.1 protein AED:0.28 eAED:0.56 QI:0|0|0|1|1|0|2|0|56 NbS00029630g0013.1 protein AED:0.27 eAED:0.56 QI:0|0|0|1|0|0|2|0|116 NbC23824403g0002.1 protein AED:0.12 eAED:0.25 QI:29|-1|0|1|-1|0|1|0|56; (*GB) gi|109727320|gb|ABG45945.1| (e_value=1e-31) DSK2 [Nicotiana tabacum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-14) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT2G24360.1 (e_value=2e-31) | Symbols: | Protein kinase superfamily protein | chr2:10364742-10366075 REVERSE LENGTH=411;; (*ITAG) Solyc07g042890.2.1 (e_value=3e-33) genomic_reference:SL2.40ch07 gene_region:53735335-53740970 transcript_region:SL2.40ch07:53735335..53740970+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00052154g0001.1 protein AED:0.12 eAED:0.13 QI:0|1|0.5|1|0|0|2|334|352; (*GB) gi|225429770|ref|XP_002280575.1| (e_value=5e-125) PREDICTED: uncharacterized protein LOC100262813 [Vitis vinifera];; (*TAIR) AT5G25500.1 (e_value=5e-97) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014202g0008.1 protein AED:0.19 eAED:0.19 QI:61|1|0.83|1|1|1|6|0|318; (*GB) gi|224053304|ref|XP_002297754.1| (e_value=4e-169) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=9e-139) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=7e-140) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g097510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80096980-80100082 transcript_region:SL2.40ch01:80096980..80100082- go_terms:GO:0005544 functional_description:"Annexin 3 (AHRD V1 ***- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00014202g0007.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|6|236|313; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=4e-141) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=9e-98) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=7e-99) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00046742g0003.1 protein AED:0.12 eAED:0.12 QI:97|1|1|1|1|1|5|691|517; (*GB) gi|584779|sp|P37822.1|AROG_SOLTU (e_value=0.0) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor;; (*SWP) sp|P37822|AROG_SOLTU (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1;; (*TAIR) AT4G39980.1 (e_value=0.0) | Symbols: DHS1 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 | chr4:18539654-18541832 FORWARD LENGTH=525;; (*ITAG) Solyc11g009080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3200299-3203598 transcript_region:SL2.40ch11:3200299..3203598+ go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 1 (AHRD V1 ***- B6TUB8_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0009073 NbS00003060g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|224112096|ref|XP_002316080.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6Z4H0|6PGL2_ORYSJ (e_value=6e-39) Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=1e-38) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc01g010250.2.1 (e_value=4e-62) genomic_reference:SL2.40ch01 gene_region:5033711-5037078 transcript_region:SL2.40ch01:5033711..5037078- go_terms:GO:0006098,GO:0005975 functional_description:"6-phosphogluconolactonase (AHRD V1 ***- B6U0H2_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0006098,GO:0005975 NbS00027416g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|240|285; (*GB) gi|350534744|ref|NP_001234413.1| (e_value=0.0) Aqp2 protein [Solanum lycopersicum];; (*SWP) sp|Q39196|PIP14_ARATH (e_value=0.0) Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1;; (*TAIR) AT4G00430.1 (e_value=0.0) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc01g094690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77897514-77900268 transcript_region:SL2.40ch01:77897514..77900268+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- Q40266_MESCR); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00027416g0008.1 protein AED:0.32 eAED:0.33 QI:172|0.76|0.71|1|0.69|0.71|14|0|539; (*GB) gi|359474199|ref|XP_002274996.2| (e_value=0.0) PREDICTED: signal peptide peptidase-like 2B-like [Vitis vinifera];; (*SWP) sp|Q5PQL3|SPP2B_RAT (e_value=1e-44) Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1;; (*TAIR) AT1G01650.1 (e_value=0.0) | Symbols: SPPL4, ATSPPL4 | SIGNAL PEPTIDE PEPTIDASE-LIKE 4 | chr1:233188-237647 REVERSE LENGTH=540;; (*ITAG) Solyc01g094680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77882950-77894918 transcript_region:SL2.40ch01:77882950..77894918+ go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00022776g0006.1 protein AED:0.22 eAED:0.27 QI:0|0.22|0.3|1|0.55|0.6|10|0|631; (*GB) gi|379987678|gb|AFD22619.1| (e_value=0.0) dicer-like 2 protein [Nicotiana attenuata];; (*SWP) sp|Q3EBC8|DCL2_ARATH (e_value=9e-72) Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2;; (*TAIR) AT3G03300.2 (e_value=7e-73) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 REVERSE LENGTH=1374;; (*ITAG) Solyc11g008540.1.1 (e_value=1e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2715282-2724508 transcript_region:SL2.40ch11:2715282..2724508+ go_terms:GO:0006396,GO:0005524 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396,GO:0005524 NbS00022776g0007.1 protein AED:0.40 eAED:0.54 QI:0|0|0|1|0.33|0.25|4|0|266; (*GB) gi|379987678|gb|AFD22619.1| (e_value=2e-67) dicer-like 2 protein [Nicotiana attenuata];; (*SWP) sp|Q3EBC8|DCL2_ARATH (e_value=1e-30) Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2;; (*TAIR) AT3G03300.3 (e_value=8e-32) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388;; (*ITAG) Solyc11g008540.1.1 (e_value=4e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2715282-2724508 transcript_region:SL2.40ch11:2715282..2724508+ go_terms:GO:0006396,GO:0005524 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396,GO:0005524 NbS00047008g0004.1 protein AED:0.25 eAED:0.26 QI:0|0|0.33|1|0|0.33|3|112|156; (*GB) gi|4097585|gb|AAD09518.1| (e_value=1e-32) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|O81025|P2A03_ARATH (e_value=5e-16) Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=3e-25) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc11g028010.1.1 (e_value=1e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00045412g0002.1 protein AED:0.27 eAED:0.66 QI:0|0|0|1|0|0|2|0|130 NbS00015671g0003.1 protein AED:0.29 eAED:0.29 QI:138|0.5|0.28|1|1|1|7|0|353; (*GB) gi|225459407|ref|XP_002285817.1| (e_value=2e-122) PREDICTED: uncharacterized protein At4g37920, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=7e-53) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT1G36320.1 (e_value=8e-104) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:13671876-13673939 FORWARD LENGTH=414;; (*ITAG) Solyc04g072400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57015439-57020648 transcript_region:SL2.40ch04:57015439..57020648+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00015671g0015.1 protein AED:0.01 eAED:0.01 QI:10|1|1|1|1|1|3|167|182; (*GB) gi|357507743|ref|XP_003624160.1| (e_value=3e-22) hypothetical protein MTR_7g079870 [Medicago truncatula];; (*ITAG) Solyc11g008880.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3054418-3056230 transcript_region:SL2.40ch11:3054418..3056230- functional_description:"Wiscott-Aldrich syndrome C-terminal (AHRD V1 ***- Q2HW10_MEDTR); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00015671g0016.1 protein AED:0.08 eAED:0.08 QI:340|1|1|1|1|1|9|186|291; (*GB) gi|147864472|emb|CAN82640.1| (e_value=6e-128) hypothetical protein VITISV_028821 [Vitis vinifera];; (*SWP) sp|Q93Y38|GDT13_ARATH (e_value=2e-119) GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1;; (*TAIR) AT5G36290.2 (e_value=2e-120) | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302977-14304972 FORWARD LENGTH=293;; (*ITAG) Solyc11g008890.1.1 (e_value=2e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3059196-3063574 transcript_region:SL2.40ch11:3059196..3063574- go_terms:GO:0016020 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0016020 NbS00015671g0004.1 protein AED:0.14 eAED:0.14 QI:100|0.9|0.90|1|0.6|0.45|11|247|582; (*GB) gi|147860393|emb|CAN82572.1| (e_value=0.0) hypothetical protein VITISV_016119 [Vitis vinifera];; (*SWP) sp|Q9SE94|MTHR1_MAIZE (e_value=0.0) Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1;; (*TAIR) AT2G44160.1 (e_value=0.0) | Symbols: MTHFR2 | methylenetetrahydrofolate reductase 2 | chr2:18262301-18265185 FORWARD LENGTH=594;; (*ITAG) Solyc11g008870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3044787-3049095 transcript_region:SL2.40ch11:3044787..3049095- go_terms:GO:0055114 functional_description:"Methylenetetrahydrofolate reductase (AHRD V1 ***- A5ATB7_VITVI); contains Interpro domain(s) IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase "; GO:0055114 NbS00015671g0113.1 protein AED:0.00 eAED:0.00 QI:363|1|1|1|1|1|2|1076|112 NbS00015671g0115.1 protein AED:0.32 eAED:0.32 QI:277|0.85|0.62|1|0.71|0.75|8|0|426 NbS00015671g0117.1 protein AED:0.00 eAED:0.00 QI:103|1|1|1|0|0|2|213|36 NbS00015671g0114.1 protein AED:0.15 eAED:0.15 QI:355|0.75|0.92|1|0.91|0.84|13|576|356 NbS00040914g0004.1 protein AED:0.26 eAED:0.26 QI:240|0.66|0.75|1|0.66|0.75|4|0|458; (*GB) gi|225425873|ref|XP_002266342.1| (e_value=4e-172) PREDICTED: uncharacterized protein LOC100240965 [Vitis vinifera];; (*TAIR) AT1G67570.1 (e_value=6e-145) | Symbols: | Protein of unknown function (DUF3537) | chr1:25325318-25326938 FORWARD LENGTH=456;; (*ITAG) Solyc04g045310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31475062-31477796 transcript_region:SL2.40ch04:31475062..31477796- functional_description:"Extracellular ligand-gated ion channel (AHRD V1 **-- D7LAY2_ARALY)"; NbS00040914g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.5|1|1|1|1|3|227|90; (*GB) gi|255547832|ref|XP_002514973.1| (e_value=1e-29) oligopeptidase, putative [Ricinus communis];; (*TAIR) AT1G67690.1 (e_value=8e-25) | Symbols: | Zincin-like metalloproteases family protein | chr1:25369086-25373730 FORWARD LENGTH=710;; (*ITAG) Solyc09g014890.2.1 (e_value=3e-43) genomic_reference:SL2.40ch09 gene_region:7125036-7153191 transcript_region:SL2.40ch09:7125036..7153191+ go_terms:GO:0006508 functional_description:"Mitochondrial intermediate peptidase (AHRD V1 **-- MIPEP_HUMAN); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0006508 NbS00008800g0008.1 protein AED:0.02 eAED:0.02 QI:179|1|1|1|0.66|1|4|251|357; (*GB) gi|225445767|ref|XP_002274323.1| (e_value=5e-130) PREDICTED: progestin and adipoq receptor-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=8e-35) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT4G30850.2 (e_value=1e-124) | Symbols: HHP2 | heptahelical transmembrane protein2 | chr4:15020540-15022278 REVERSE LENGTH=358;; (*ITAG) Solyc12g010480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3490185-3494072 transcript_region:SL2.40ch12:3490185..3494072- go_terms:GO:0016021 functional_description:"Adiponectin receptor (AHRD V1 ***- Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0016021 NbS00008800g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.2|0.16|0.5|0.8|0.83|6|0|323; (*GB) gi|147826987|emb|CAN77779.1| (e_value=6e-113) hypothetical protein VITISV_004172 [Vitis vinifera];; (*TAIR) AT2G12646.1 (e_value=5e-96) | Symbols: | PLATZ transcription factor family protein | chr2:5167179-5169022 REVERSE LENGTH=256;; (*ITAG) Solyc12g010470.1.1 (e_value=1e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3487139-3488997 transcript_region:SL2.40ch12:3487139..3488997+ functional_description:"Zinc-binding protein (AHRD V1 **-- Q948W7_PEA); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00033960g0009.1 protein AED:0.32 eAED:0.32 QI:0|1|0.8|1|1|1|5|389|349; (*GB) gi|224145116|ref|XP_002325532.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=0.0) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT4G09900.1 (e_value=0.0) | Symbols: ATMES12, MES12 | methyl esterase 12 | chr4:6221767-6223924 REVERSE LENGTH=349;; (*ITAG) Solyc06g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36827493-36832143 transcript_region:SL2.40ch06:36827493..36832143+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LXY6_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00033960g0005.1 protein AED:0.21 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|351653936|ref|YP_004891662.1| (e_value=3e-29) unnamed protein product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-28) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01000.1 (e_value=2e-16) | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436 FORWARD LENGTH=343;; (*ITAG) Solyc11g021310.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00019594g0006.1 protein AED:0.21 eAED:0.21 QI:184|1|1|1|1|1|8|465|438; (*GB) gi|356500541|ref|XP_003519090.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit E-like [Glycine max];; (*SWP) sp|A7RWP6|EIF3E_NEMVE (e_value=2e-169) Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1;; (*TAIR) AT3G57290.1 (e_value=0.0) | Symbols: EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6, INT6 | eukaryotic translation initiation factor 3E | chr3:21196786-21199073 REVERSE LENGTH=441;; (*ITAG) Solyc10g079880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60673368-60677089 transcript_region:SL2.40ch10:60673368..60677089- functional_description:"Eukaryotic translation initiation factor 3 subunit 6 (AHRD V1 ***- B6TRV3_MAIZE); contains Interpro domain(s) IPR016650 Translation initiation factor 3, subunit 6, eukaryotic "; NbS00019594g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|126; (*GB) gi|384081608|ref|NP_001244908.1| (e_value=5e-72) cytokinin oxidase/dehydrogenase-like 7 precursor [Solanum lycopersicum];; (*SWP) sp|Q75K78|CKX9_ORYSJ (e_value=2e-58) Cytokinin dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CKX9 PE=2 SV=1;; (*TAIR) AT2G41510.1 (e_value=2e-58) | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314626-17316861 FORWARD LENGTH=575;; (*ITAG) Solyc04g016430.2.1 (e_value=1e-69) genomic_reference:SL2.40ch04 gene_region:7229849-7232636 transcript_region:SL2.40ch04:7229849..7232636- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 **** C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00041696g0015.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|1|0.75|0.6|5|0|487; (*GB) gi|255572670|ref|XP_002527268.1| (e_value=2e-122) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=7e-94) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G25440.1 (e_value=5e-95) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9223998-9225505 FORWARD LENGTH=444;; (*ITAG) Solyc06g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44864363-44871826 transcript_region:SL2.40ch06:44864363..44871826- go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00041696g0016.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.83|0.83|0.8|0.66|6|325|289; (*GB) gi|156767187|gb|ABU95101.1| (e_value=3e-131) putative C-8,7 sterol isomerase [Solanum tuberosum];; (*SWP) sp|Q9FTZ2|EBP_ORYSJ (e_value=5e-79) Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1;; (*TAIR) AT1G20050.1 (e_value=9e-75) | Symbols: HYD1 | C-8,7 sterol isomerase | chr1:6949160-6950135 FORWARD LENGTH=223;; (*ITAG) Solyc06g082980.2.1 (e_value=7e-135) genomic_reference:SL2.40ch06 gene_region:44859070-44863088 transcript_region:SL2.40ch06:44859070..44863088- go_terms:GO:0000247 functional_description:"3-beta-hydroxysteroid-Delta8 Delta7-isomerase (AHRD V1 **-* C3KH60_ANOFI); contains Interpro domain(s) IPR007905 Emopamil-binding "; GO:0000247 NbS00041696g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.5|1|1|1|4|198|515; (*GB) gi|359494813|ref|XP_003634846.1| (e_value=0.0) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-22) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc06g082930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44846738-44850138 transcript_region:SL2.40ch06:44846738..44850138+ functional_description:"FRIGIDA (Fragment) (AHRD V1 *-*- Q58T23_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00041696g0018.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.33|1|0.5|0.66|3|0|165; (*GB) gi|29468504|gb|AAO85557.1| (e_value=1e-66) photosystem I subunit XI [Nicotiana attenuata];; (*SWP) sp|Q41385|PSAL_SPIOL (e_value=5e-45) Photosystem I reaction center subunit XI, chloroplastic OS=Spinacia oleracea GN=PSAL PE=1 SV=1;; (*TAIR) AT4G12800.1 (e_value=7e-44) | Symbols: PSAL | photosystem I subunit l | chr4:7521469-7522493 FORWARD LENGTH=219;; (*ITAG) Solyc06g082940.2.1 (e_value=2e-66) genomic_reference:SL2.40ch06 gene_region:44850630-44851884 transcript_region:SL2.40ch06:44850630..44851884+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit XI (AHRD V1 ***- B6SHL1_MAIZE); contains Interpro domain(s) IPR003757 Photosystem I reaction centre, subunit XI PsaL "; GO:0009538 NbS00041696g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0.5|1|1|1|2|0|115; (*GB) gi|29468504|gb|AAO85557.1| (e_value=8e-26) photosystem I subunit XI [Nicotiana attenuata];; (*SWP) sp|Q9SUI4|PSAL_ARATH (e_value=9e-23) Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2;; (*TAIR) AT4G12800.1 (e_value=7e-24) | Symbols: PSAL | photosystem I subunit l | chr4:7521469-7522493 FORWARD LENGTH=219;; (*ITAG) Solyc06g082940.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:44850630-44851884 transcript_region:SL2.40ch06:44850630..44851884+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit XI (AHRD V1 ***- B6SHL1_MAIZE); contains Interpro domain(s) IPR003757 Photosystem I reaction centre, subunit XI PsaL "; GO:0009538 NbC23755045g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|58 NbS00007675g0006.1 protein AED:0.29 eAED:0.29 QI:0|0.2|0|0.83|0.8|0.5|6|0|449; (*GB) gi|357438065|ref|XP_003589308.1| (e_value=7e-52) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=4e-40) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-41) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011230.1.1 (e_value=2e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00013451g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|0.28|0.37|8|36|476; (*GB) gi|224092920|ref|XP_002309754.1| (e_value=1e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DR04|RTNLQ_ARATH (e_value=2e-81) Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1;; (*TAIR) AT2G20590.1 (e_value=1e-82) | Symbols: | Reticulon family protein | chr2:8867243-8869166 REVERSE LENGTH=431;; (*ITAG) Solyc07g053700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59455869-59458997 transcript_region:SL2.40ch07:59455869..59458997- go_terms:GO:0005783 functional_description:"Reticulon-like protein B17 (AHRD V1 *-*- RTNLQ_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00013451g0006.1 protein AED:0.18 eAED:0.20 QI:0|0.25|0.22|0.88|0.62|0.55|9|0|487; (*GB) gi|224133454|ref|XP_002328046.1| (e_value=1e-140) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=8e-123) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=6e-124) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59459841-59463049 transcript_region:SL2.40ch07:59459841..59463049- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00046551g0001.1 protein AED:0.18 eAED:0.18 QI:90|0.57|0.5|0.87|1|1|8|0|592; (*GB) gi|225464956|ref|XP_002274254.1| (e_value=0.0) PREDICTED: putative phagocytic receptor 1b-like [Vitis vinifera];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=1e-129) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT1G08350.2 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr1:2632970-2635605 REVERSE LENGTH=589;; (*ITAG) Solyc06g074310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42317439-42324174 transcript_region:SL2.40ch06:42317439..42324174- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6T9C2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00010281g0008.1 protein AED:0.10 eAED:0.10 QI:286|1|0.5|1|0.66|0.75|4|0|1032; (*GB) gi|147818710|emb|CAN65039.1| (e_value=0.0) hypothetical protein VITISV_009459 [Vitis vinifera];; (*TAIR) AT1G13940.1 (e_value=6e-69) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005;; (*ITAG) Solyc04g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:333133-336786 transcript_region:SL2.40ch04:333133..336786- functional_description:"Os03g0758600 protein (Fragment) (AHRD V1 *-*- Q0DNE0_ORYSJ); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00023118g0001.1 protein AED:0.11 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|224|413; (*GB) gi|342220082|gb|AEL17348.1| (e_value=7e-139) TCP1 [Petunia x hybrida];; (*SWP) sp|A0AQW4|TCP12_ARATH (e_value=4e-27) Transcription factor TCP12 OS=Arabidopsis thaliana GN=TCP12 PE=2 SV=1;; (*TAIR) AT1G68800.1 (e_value=3e-28) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc04g006980.1.1 (e_value=6e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:687298-688425 transcript_region:SL2.40ch04:687298..688425- functional_description:"CYCLOIDEA-like group 1B protein (Fragment) (AHRD V1 *-*- Q6VM90_LUPAG); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00023610g0002.1 protein AED:0.06 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|51556906|gb|AAT72296.2| (e_value=1e-161) microsomal omega-6-desaturase [Nicotiana tabacum];; (*SWP) sp|P46313|FAD6E_ARATH (e_value=3e-150) Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=2e-151) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc01g006430.2.1 (e_value=1e-163) genomic_reference:SL2.40ch01 gene_region:1033539-1035178 transcript_region:SL2.40ch01:1033539..1035178- go_terms:GO:0042389 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** Q461Q1_HEVBR); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00023610g0009.1 protein AED:0.16 eAED:0.16 QI:223|0.77|0.8|1|0.44|0.4|10|0|776; (*GB) gi|225448649|ref|XP_002279573.1| (e_value=0.0) PREDICTED: potassium transporter 2 [Vitis vinifera];; (*SWP) sp|O22881|POT2_ARATH (e_value=0.0) Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2;; (*TAIR) AT2G40540.2 (e_value=0.0) | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | potassium transporter 2 | chr2:16931445-16934516 FORWARD LENGTH=794;; (*ITAG) Solyc06g050170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29143972-29153122 transcript_region:SL2.40ch06:29143972..29153122+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T761_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00023610g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|6|0|321; (*GB) gi|167018103|gb|ABZ05022.1| (e_value=4e-125) delta-12 fatty acid desaturase [Davidia involucrata];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=1e-117) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=4e-115) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc01g006430.2.1 (e_value=1e-125) genomic_reference:SL2.40ch01 gene_region:1033539-1035178 transcript_region:SL2.40ch01:1033539..1035178- go_terms:GO:0042389 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** Q461Q1_HEVBR); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00021591g0003.1 protein AED:0.69 eAED:0.69 QI:0|1|0|1|1|0.5|2|0|87; (*GB) gi|356504547|ref|XP_003521057.1| (e_value=3e-23) PREDICTED: elongator complex protein 4-like [Glycine max];; (*SWP) sp|Q9C778|ELP4_ARATH (e_value=1e-18) Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1;; (*TAIR) AT3G11220.1 (e_value=9e-20) | Symbols: ELO1 | Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=355;; (*ITAG) Solyc11g010950.1.1 (e_value=6e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3999243-4002830 transcript_region:SL2.40ch11:3999243..4002830+ go_terms:GO:0033588 functional_description:"Elongator complex protein 4 (AHRD V1 ***- ELP4_BOVIN); contains Interpro domain(s) IPR008728 Elongator complex protein 4 "; GO:0033588 NbS00021591g0005.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|70 NbS00037643g0001.1 protein AED:0.17 eAED:0.17 QI:400|0.77|0.7|0.9|0.88|0.8|10|346|290; (*GB) gi|225435211|ref|XP_002284874.1| (e_value=4e-136) PREDICTED: phosphatidylinositol transfer protein 1-like [Vitis vinifera];; (*SWP) sp|Q9NCL8|PITP1_DICDI (e_value=5e-58) Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1;; (*ITAG) Solyc06g005100.2.1 (e_value=2e-117) genomic_reference:SL2.40ch06 gene_region:119977-124995 transcript_region:SL2.40ch06:119977..124995+ go_terms:GO:0008526 functional_description:"Phosphatidylinositol transfer protein expressed (AHRD V1 **** Q10N10_ORYSJ); contains Interpro domain(s) IPR001666 Phosphatidylinositol transfer protein "; GO:0008526 NbS00017910g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|0.75|1|1|4|0|340; (*GB) gi|255579815|ref|XP_002530745.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17990.1 (e_value=7e-120) | Symbols: | BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7827480-7828596 FORWARD LENGTH=338;; (*ITAG) Solyc02g083990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41795633-41799345 transcript_region:SL2.40ch02:41795633..41799345+ functional_description:"Calcium-dependent protein kinase CPK1 adapter protein 2-like (AHRD V1 ***- Q5Z9P7_ORYSJ)"; NbS00020064g0003.1 protein AED:0.23 eAED:0.23 QI:406|1|0.90|1|0.5|0.54|11|0|668; (*GB) gi|255586955|ref|XP_002534076.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=6e-25) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT2G43490.6 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:18055106-18058179 REVERSE LENGTH=741;; (*ITAG) Solyc03g058470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:22088747-22092694 transcript_region:SL2.40ch03:22088747..22092694- go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q7TPU5_MOUSE); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00020064g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|357464091|ref|XP_003602327.1| (e_value=6e-47) Auxin-induced protein 10A5 [Medicago truncatula];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=1e-16) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT2G46690.1 (e_value=2e-39) | Symbols: | SAUR-like auxin-responsive protein family | chr2:19180904-19181269 FORWARD LENGTH=121;; (*ITAG) Solyc03g082510.1.1 (e_value=2e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:45984894-45985238 transcript_region:SL2.40ch03:45984894..45985238- functional_description:"Auxin-responsive family protein (AHRD V1 **-- D7M515_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00020064g0013.1 protein AED:0.63 eAED:0.67 QI:0|0|0|0.75|0|0|4|0|160 NbS00016456g0009.1 protein AED:0.12 eAED:0.12 QI:212|1|1|1|1|1|13|269|680; (*GB) gi|359483452|ref|XP_002270330.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera];; (*SWP) sp|P43254|COP1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT2G32950.1 (e_value=0.0) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc11g011980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4927052-4931762 transcript_region:SL2.40ch11:4927052..4931762- go_terms:GO:0008270 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00016456g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.57|1|0.83|0.71|7|515|513; (*GB) gi|356555714|ref|XP_003546175.1| (e_value=2e-163) PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=1e-104) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=6e-134) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc04g014680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4937457-4942883 transcript_region:SL2.40ch04:4937457..4942883- go_terms:GO:0004221 functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-* B6TDL6_MAIZE)"; GO:0004221 NbS00016456g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|1|1|6|0|253; (*GB) gi|224113857|ref|XP_002316593.1| (e_value=3e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9BTZ2|DHRS4_HUMAN (e_value=3e-52) Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=3;; (*TAIR) AT4G05530.1 (e_value=7e-107) | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254;; (*ITAG) Solyc04g014670.2.1 (e_value=3e-131) genomic_reference:SL2.40ch04 gene_region:4934139-4937078 transcript_region:SL2.40ch04:4934139..4937078+ go_terms:GO:0001758 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C0BIG4_9BACT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0001758 NbS00011460g0007.1 protein AED:0.38 eAED:0.49 QI:0|0.33|0.25|1|0.66|0.5|4|4|88 NbS00011871g0002.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.55|1|1|9|0|299; (*GB) gi|225438527|ref|XP_002279361.1| (e_value=9e-106) PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera];; (*SWP) sp|Q9XIK4|U202A_ARATH (e_value=2e-73) UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2;; (*TAIR) AT1G10490.1 (e_value=1e-74) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=4e-132) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbC24906009g0002.1 protein AED:0.28 eAED:0.50 QI:0|1|0|1|1|1|2|0|98 NbS00022805g0006.1 protein AED:0.08 eAED:0.16 QI:0|0.25|0|0.8|0.75|0.6|5|0|383; (*GB) gi|143023740|gb|ABO93067.1| (e_value=2e-161) SISTER OF EVERGREEN [Petunia x hybrida];; (*SWP) sp|Q6X7J5|WOX8_ARATH (e_value=7e-62) WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2 SV=1;; (*TAIR) AT5G45980.1 (e_value=5e-63) | Symbols: WOX8, STPL | WUSCHEL related homeobox 8 | chr5:18648921-18650698 FORWARD LENGTH=325;; (*ITAG) Solyc02g077390.1.1 (e_value=5e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36913957-36915889 transcript_region:SL2.40ch02:36913957..36915889- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 11 (AHRD V1 *-*- B6SN57_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00016779g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.66|0.77|0.75|0.66|9|273|707; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=0.0) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc06g051920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32082202-32086782 transcript_region:SL2.40ch06:32082202..32086782+ go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00017221g0013.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|335; (*GB) gi|225453144|ref|XP_002273909.1| (e_value=2e-133) PREDICTED: U-box domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=3e-31) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT3G03440.1 (e_value=6e-113) | Symbols: | ARM repeat superfamily protein | chr3:815709-818568 FORWARD LENGTH=408;; (*ITAG) Solyc03g043700.2.1 (e_value=7e-166) genomic_reference:SL2.40ch03 gene_region:11189118-11192050 transcript_region:SL2.40ch03:11189118..11192050- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L0H5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00017221g0014.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0.33|1|0.5|0.33|3|237|110; (*GB) gi|356569531|ref|XP_003552953.1| (e_value=3e-44) PREDICTED: protease Do-like 7-like [Glycine max];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=5e-44) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=4e-45) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc03g043660.2.1 (e_value=7e-50) genomic_reference:SL2.40ch03 gene_region:11111754-11138015 transcript_region:SL2.40ch03:11111754..11138015- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00017221g0006.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|296087172|emb|CBI33546.3| (e_value=7e-22) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g091380.1.1 (e_value=8e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47264046-47264363 transcript_region:SL2.40ch02:47264046..47264363- functional_description:"Unknown Protein (AHRD V1)"; NbS00017221g0012.1 protein AED:0.75 eAED:0.87 QI:0|0|0|0.66|1|0.66|3|0|115; (*GB) gi|359488197|ref|XP_002271823.2| (e_value=8e-44) PREDICTED: protease Do-like 7-like [Vitis vinifera];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=3e-38) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=2e-39) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc03g043660.2.1 (e_value=5e-54) genomic_reference:SL2.40ch03 gene_region:11111754-11138015 transcript_region:SL2.40ch03:11111754..11138015- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00011795g0012.1 protein AED:0.03 eAED:0.03 QI:581|1|0.77|1|0.75|0.88|9|0|429; (*GB) gi|296081073|emb|CBI18267.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6P158|DHX57_HUMAN (e_value=3e-60) Putative ATP-dependent RNA helicase DHX57 OS=Homo sapiens GN=DHX57 PE=1 SV=2;; (*TAIR) AT5G04895.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00011795g0011.1 protein AED:0.05 eAED:0.05 QI:34|1|0.5|1|1|1|2|0|64; (*GB) gi|358348445|ref|XP_003638257.1| (e_value=2e-33) hypothetical protein MTR_123s0012, partial [Medicago truncatula];; (*SWP) sp|Q8VHK9|DHX36_MOUSE (e_value=2e-17) Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1;; (*TAIR) AT5G04895.1 (e_value=3e-34) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00011795g0007.1 protein AED:0.50 eAED:0.50 QI:0|1|0.25|1|1|0.75|4|0|194; (*GB) gi|255546785|ref|XP_002514451.1| (e_value=3e-110) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q8VHK9|DHX36_MOUSE (e_value=4e-25) Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1;; (*TAIR) AT5G04895.1 (e_value=3e-100) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=9e-119) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00031751g0013.1 protein AED:0.34 eAED:0.55 QI:0|0|0|1|0|0.33|3|0|215; (*GB) gi|57013999|ref|YP_173470.1| (e_value=1e-73) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=2e-55) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=1e-62) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00031751g0009.1 protein AED:0.36 eAED:0.41 QI:0|0|0|0.33|0|0.33|3|0|218; (*GB) gi|57014000|ref|YP_173471.1| (e_value=4e-63) NADH dehydrogenase subunit 6 [Nicotiana tabacum];; (*SWP) sp|P60498|NU6M_BRACM (e_value=1e-61) NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris GN=ND6 PE=2 SV=1;; (*ITAG) ATMG00270.1 (e_value=1e-62) | Symbols: NAD6 | NADH dehydrogenase 6 | chrM:76642-77259 REVERSE LENGTH=205;; (*ITAG) Solyc00g021630.1.1 (e_value=4e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11968648-11969301 transcript_region:SL2.40ch00:11968648..11969301- go_terms:GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase chain 6 (Fragment) (AHRD V1 ***- Q2PZB4_BRAOB); contains Interpro domain(s) IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 "; GO:0055114 NbS00031751g0012.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|0|0|3|0|257; (*GB) gi|57014002|ref|YP_173473.1| (e_value=2e-67) hypothetical protein NitaMp136 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=1e-24) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=2e-22) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=6e-56) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00031751g0011.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0|0|3|0|194; (*GB) gi|57014001|ref|YP_173472.1| (e_value=1e-80) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=4e-54) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=3e-59) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=3e-83) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00031751g0015.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0|2|0|163; (*GB) gi|57013999|ref|YP_173470.1| (e_value=9e-88) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=2e-77) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=1e-79) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=8e-89) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00031751g0016.1 protein AED:0.28 eAED:0.42 QI:0|0|0|1|0|0|4|0|91 NbS00031751g0014.1 protein AED:0.44 eAED:0.72 QI:0|0|0|1|0|0|2|0|84; (*GB) gi|57013999|ref|YP_173470.1| (e_value=3e-22) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=5e-16) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=5e-17) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=3e-22) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00007819g0018.1 protein AED:0.20 eAED:0.20 QI:19|0.71|0.62|0.87|0.57|0.62|8|0|529; (*GB) gi|225440364|ref|XP_002270472.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256181 [Vitis vinifera];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=2e-82) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT5G02320.2 (e_value=1e-132) | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548;; (*ITAG) Solyc09g010820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00007819g0021.1 protein AED:0.00 eAED:0.00 QI:236|1|0.5|1|1|1|2|0|74; (*ITAG) Solyc10g084760.1.1 (e_value=3e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63495399-63513748 transcript_region:SL2.40ch10:63495399..63513748- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00007819g0015.1 protein AED:0.29 eAED:0.36 QI:0|0.58|0.38|0.84|0.75|0.61|13|605|882; (*GB) gi|356523153|ref|XP_003530206.1| (e_value=3e-167) PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max];; (*SWP) sp|Q5U430|UBR3_MOUSE (e_value=3e-13) E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3;; (*TAIR) AT5G02310.1 (e_value=3e-101) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00007819g0016.1 protein AED:0.60 eAED:0.60 QI:0|0.5|0|0.66|1|0.66|3|0|357; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=3e-107) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=2e-72) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=1e-159) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00060466g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|1|1|1|1|2|0|221; (*GB) gi|359479472|ref|XP_003632277.1| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera];; (*TAIR) AT5G22790.1 (e_value=9e-46) | Symbols: RER1 | reticulata-related 1 | chr5:7599395-7601573 REVERSE LENGTH=433;; (*ITAG) Solyc11g066740.1.1 (e_value=1e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49620493-49625711 transcript_region:SL2.40ch11:49620493..49625711+ functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; NbS00060466g0007.1 protein AED:0.22 eAED:0.22 QI:308|0.33|0.25|1|0.33|0.5|4|0|643; (*GB) gi|45935134|gb|AAS79592.1| (e_value=0.0) putative non-phototropic hypocotyl 3-like protein [Ipomoea trifida];; (*SWP) sp|Q9FYC8|Y3482_ARATH (e_value=0.0) BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2;; (*TAIR) AT3G44820.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:16361864-16364411 REVERSE LENGTH=651;; (*ITAG) Solyc11g066730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49612094-49617915 transcript_region:SL2.40ch11:49612094..49617915+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00037512g0010.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0.66|0.5|4|0|561; (*GB) gi|364285557|gb|AEW48196.1| (e_value=5e-105) disease resistance protein RGH7 [Solanum chacoense];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=6e-28) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=3e-16) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc12g006040.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:633525-634647 transcript_region:SL2.40ch12:633525..634647- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00037512g0009.1 protein AED:0.23 eAED:0.23 QI:153|1|1|1|1|1|6|290|226; (*GB) gi|76161000|gb|ABA40463.1| (e_value=1e-101) elongation factor-like protein [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=1e-80) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT5G19510.1 (e_value=6e-79) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr5:6581854-6583137 REVERSE LENGTH=224;; (*ITAG) Solyc11g072190.1.1 (e_value=2e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52501034-52504379 transcript_region:SL2.40ch11:52501034..52504379- go_terms:GO:0005853 functional_description:"Elongation factor beta-1 (AHRD V1 ***- A2YPM1_ORYSI); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0005853 NbS00037512g0011.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|364285599|gb|AEW48217.1| (e_value=3e-17) disease resistance protein RX5 [Solanum stenotomum];; (*ITAG) Solyc12g009460.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00024152g0006.1 protein AED:0.13 eAED:0.14 QI:109|0.94|0.94|1|0.94|0.94|18|350|843; (*GB) gi|225427718|ref|XP_002274534.1| (e_value=0.0) PREDICTED: DNA replication licensing factor MCM4 [Vitis vinifera];; (*SWP) sp|P30665|MCM4_YEAST (e_value=0.0) DNA replication licensing factor MCM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM4 PE=1 SV=2;; (*TAIR) AT2G16440.1 (e_value=0.0) | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5) family protein | chr2:7126536-7130665 REVERSE LENGTH=847;; (*ITAG) Solyc01g110130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88665546-88671062 transcript_region:SL2.40ch01:88665546..88671062- go_terms:GO:0003712 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2TZM7_ASPOR); contains Interpro domain(s) IPR008047 MCM protein 4 "; GO:0003712 NbS00024152g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.78|0.85|1|0.78|0.75|20|633|910; (*GB) gi|225427716|ref|XP_002265086.1| (e_value=0.0) PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera];; (*SWP) sp|Q54E04|VATM_DICDI (e_value=4e-162) Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2;; (*TAIR) AT4G39080.1 (e_value=0.0) | Symbols: VHA-A3 | vacuolar proton ATPase A3 | chr4:18209513-18214752 FORWARD LENGTH=821;; (*ITAG) Solyc01g110120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88653085-88663519 transcript_region:SL2.40ch01:88653085..88663519- go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00005284g0009.1 protein AED:0.16 eAED:0.16 QI:161|1|1|1|1|1|2|214|156; (*GB) gi|82470779|gb|ABB77426.1| (e_value=2e-96) Skp1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=7e-82) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=6e-83) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=2e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00005284g0010.1 protein AED:0.26 eAED:0.26 QI:91|0.81|0.83|0.91|0.45|0.58|12|770|369; (*GB) gi|224103167|ref|XP_002312951.1| (e_value=2e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=6e-25) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=2e-97) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc11g040150.1.1 (e_value=2e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28610740-28616082 transcript_region:SL2.40ch11:28610740..28616082- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00026832g0002.1 protein AED:0.27 eAED:0.28 QI:0|0.82|0.83|1|0.95|0.91|24|393|881; (*GB) gi|225423779|ref|XP_002277341.1| (e_value=0.0) PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|P36428|SYA_ARATH (e_value=0.0) Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3;; (*TAIR) AT1G50200.1 (e_value=0.0) | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | chr1:18591429-18598311 REVERSE LENGTH=1003;; (*ITAG) Solyc03g097290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53059639-53073900 transcript_region:SL2.40ch03:53059639..53073900+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** C1EDP7_9CHLO); contains Interpro domain(s) IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal "; GO:0000049 NbS00026832g0017.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.66|1|0.6|0.5|6|649|370; (*GB) gi|52546928|gb|AAU81597.1| (e_value=2e-101) cysteine proteinase inhibitor [Petunia x hybrida];; (*SWP) sp|Q8H0X6|CYT6_ARATH (e_value=7e-72) Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2;; (*TAIR) AT3G12490.1 (e_value=4e-73) | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3:3960523-3961777 REVERSE LENGTH=201;; (*ITAG) Solyc03g097270.2.1 (e_value=5e-98) genomic_reference:SL2.40ch03 gene_region:53034151-53040369 transcript_region:SL2.40ch03:53034151..53040369+ go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q5Y7Z8_PETHY); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00026832g0005.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|65 NbS00026832g0011.1 protein AED:0.15 eAED:0.15 QI:201|1|1|1|1|1|2|350|375; (*GB) gi|225454641|ref|XP_002267090.1| (e_value=1e-116) PREDICTED: uncharacterized protein LOC100249418 [Vitis vinifera];; (*TAIR) AT5G17510.1 (e_value=9e-99) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5770518-5772343 REVERSE LENGTH=369;; (*ITAG) Solyc03g097300.2.1 (e_value=1e-163) genomic_reference:SL2.40ch03 gene_region:53074422-53079125 transcript_region:SL2.40ch03:53074422..53079125- functional_description:"Glutamine-rich protein (AHRD V1 ***- Q9LF51_ARATH)"; NbS00011838g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|359483990|ref|XP_002271093.2| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100259675 [Vitis vinifera];; (*TAIR) AT1G30800.1 (e_value=3e-28) | Symbols: | Fasciclin-like arabinogalactan family protein | chr1:10936995-10937714 FORWARD LENGTH=239;; (*ITAG) Solyc11g072680.1.1 (e_value=2e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52975420-52976622 transcript_region:SL2.40ch11:52975420..52976622+ functional_description:"Fasciclin-like arabinogalactan protein 21 (AHRD V1 *-*- FLA21_ARATH); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00011838g0010.1 protein AED:0.31 eAED:0.31 QI:20|0.9|0.90|1|0.8|0.81|11|597|249; (*GB) gi|350534486|ref|NP_001233887.1| (e_value=1e-166) 3-desoxy-D-manno octulosonic acid-8-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9AV97|KDSA_ARATH (e_value=1e-157) 2-dehydro-3-deoxyphosphooctonate aldolase OS=Arabidopsis thaliana GN=KDSA PE=2 SV=2;; (*TAIR) AT1G79500.4 (e_value=9e-159) | Symbols: AtkdsA1 | Aldolase-type TIM barrel family protein | chr1:29903604-29905989 FORWARD LENGTH=290;; (*ITAG) Solyc11g072690.1.1 (e_value=3e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52977765-52982804 transcript_region:SL2.40ch11:52977765..52982804+ go_terms:GO:0008152,GO:0009058,GO:0005737 functional_description:"2-dehydro-3-deoxyphosphooctonate aldolase (AHRD V1 ***- B4F7V1_MAIZE); contains Interpro domain(s) IPR006269 3-deoxy-8-phosphooctulonate synthase "; GO:0008152,GO:0009058,GO:0005737 NbS00011838g0011.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|3|0|271; (*GB) gi|255582073|ref|XP_002531833.1| (e_value=1e-112) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT4G23490.1 (e_value=2e-99) | Symbols: | Protein of unknown function (DUF604) | chr4:12251580-12253973 REVERSE LENGTH=526;; (*ITAG) Solyc11g072700.1.1 (e_value=2e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52983862-52985655 transcript_region:SL2.40ch11:52983862..52985655- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00060131g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|540|514; (*GB) gi|225460779|ref|XP_002274589.1| (e_value=3e-139) PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=1e-44) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=5e-109) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc11g012470.1.1 (e_value=2e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5302951-5305498 transcript_region:SL2.40ch11:5302951..5305498- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00021044g0016.1 protein AED:0.21 eAED:0.21 QI:231|1|1|1|0.66|0.5|4|6|113; (*GB) gi|24473796|gb|AAL91663.1| (e_value=2e-31) 60s acidic ribosomal protein [Prunus dulcis];; (*SWP) sp|P41099|RLA2_PARAR (e_value=2e-30) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=1e-27) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc11g067100.1.1 (e_value=2e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:49928225-49929780 transcript_region:SL2.40ch11:49928225..49929780- go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00021044g0018.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|4|0|191; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=6e-112) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*SWP) sp|Q4PFV5|DPOE_USTMA (e_value=8e-80) DNA polymerase epsilon catalytic subunit A OS=Ustilago maydis (strain 521 / FGSC 9021) GN=POL2 PE=3 SV=1;; (*TAIR) AT1G08260.1 (e_value=6e-105) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067120.1.1 (e_value=1e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49942772-49945748 transcript_region:SL2.40ch11:49942772..49945748+ go_terms:GO:0003676 functional_description:"DNA polymerase (AHRD V1 ***- B9SSU6_RICCO); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00021044g0024.1 protein AED:0.08 eAED:0.09 QI:0|1|1|1|1|1|10|0|401; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=0.0) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*SWP) sp|Q07864|DPOE1_HUMAN (e_value=3e-118) DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5;; (*TAIR) AT1G08260.1 (e_value=0.0) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49933152-49939884 transcript_region:SL2.40ch11:49933152..49939884+ go_terms:GO:0003676,GO:0006260 functional_description:"DNA polymerase (AHRD V1 ***- B9SSU6_RICCO); contains Interpro domain(s) IPR006133 DNA-directed DNA polymerase, family B, exonuclease "; GO:0003676,GO:0006260 NbS00021044g0022.1 protein AED:0.09 eAED:0.10 QI:0|1|1|1|1|1|9|0|344; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=0.0) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*SWP) sp|Q9WVF7|DPOE1_MOUSE (e_value=2e-139) DNA polymerase epsilon catalytic subunit A OS=Mus musculus GN=Pole PE=2 SV=3;; (*TAIR) AT1G08260.1 (e_value=0.0) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49948786-49956408 transcript_region:SL2.40ch11:49948786..49956408+ go_terms:GO:0008152,GO:0006260 functional_description:"DNA polymerase (AHRD V1 ***- B9MYH6_POPTR); contains Interpro domain(s) IPR006134 DNA-directed DNA polymerase, family B, conserved region "; GO:0008152,GO:0006260 NbS00021044g0020.1 protein AED:0.17 eAED:0.17 QI:319|0.81|0.83|1|0.81|0.75|12|26|567; (*GB) gi|356543564|ref|XP_003540230.1| (e_value=0.0) PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1-like [Glycine max];; (*SWP) sp|Q8CEC6|PPWD1_MOUSE (e_value=0.0) Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=2;; (*TAIR) AT3G44600.1 (e_value=0.0) | Symbols: CYP71 | cyclophilin71 | chr3:16165368-16169201 REVERSE LENGTH=631;; (*ITAG) Solyc11g067090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49920115-49927266 transcript_region:SL2.40ch11:49920115..49927266+ go_terms:GO:0042393 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- A8NQ29_COPC7); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0042393 NbS00021044g0025.1 protein AED:0.64 eAED:0.99 QI:0|0|0|0.69|1|1|13|0|214 NbS00027671g0011.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0.85|0.75|8|253|503; (*GB) gi|374250709|gb|AEY99977.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q39016|CDPKB_ARATH (e_value=0.0) Calcium-dependent protein kinase 11 OS=Arabidopsis thaliana GN=CPK11 PE=1 SV=2;; (*TAIR) AT1G35670.1 (e_value=0.0) | Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 | calcium-dependent protein kinase 2 | chr1:13205456-13208058 FORWARD LENGTH=495;; (*ITAG) Solyc06g065380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37191712-37195833 transcript_region:SL2.40ch06:37191712..37195833+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 **** D7LXA9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00027671g0009.1 protein AED:0.29 eAED:0.30 QI:0|0.28|0.62|1|1|1|8|257|304; (*GB) gi|255571748|ref|XP_002526817.1| (e_value=7e-26) 50S ribosomal protein L21, putative [Ricinus communis];; (*SWP) sp|P24613|RK21_SPIOL (e_value=1e-22) 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1;; (*TAIR) AT1G35680.1 (e_value=5e-24) | Symbols: | Ribosomal protein L21 | chr1:13208777-13210246 FORWARD LENGTH=220;; (*ITAG) Solyc06g065390.2.1 (e_value=7e-42) genomic_reference:SL2.40ch06 gene_region:37196707-37200050 transcript_region:SL2.40ch06:37196707..37200050+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6U3Z0_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00027671g0014.1 protein AED:0.36 eAED:0.38 QI:262|0.5|0.66|1|1|1|3|293|128; (*GB) gi|676884|dbj|BAA06151.1| (e_value=1e-52) pit2 [Nicotiana tabacum];; (*TAIR) AT1G71950.1 (e_value=1e-35) | Symbols: | Proteinase inhibitor, propeptide | chr1:27080453-27081573 REVERSE LENGTH=136;; (*ITAG) Solyc06g065370.2.1 (e_value=8e-49) genomic_reference:SL2.40ch06 gene_region:37187770-37191057 transcript_region:SL2.40ch06:37187770..37191057+ go_terms:GO:0043086 functional_description:"Subtilase family protein (AHRD V1 **-- D7KTL9_ARALY); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0043086 NbS00027671g0017.1 protein AED:0.35 eAED:0.89 QI:67|0|0.5|1|0|0.5|2|0|133 NbS00027671g0018.1 protein AED:0.36 eAED:0.36 QI:0|1|0.75|1|1|1|4|0|259; (*GB) gi|30681121|ref|NP_192696.3| (e_value=2e-124) SNARE associated Golgi protein [Arabidopsis thaliana];; (*SWP) sp|Q8L586|Y4958_ARATH (e_value=5e-126) Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1;; (*TAIR) AT4G09580.1 (e_value=4e-127) | Symbols: | SNARE associated Golgi protein family | chr4:6052721-6054313 REVERSE LENGTH=287;; (*ITAG) Solyc06g065400.2.1 (e_value=2e-147) genomic_reference:SL2.40ch06 gene_region:37200368-37205677 transcript_region:SL2.40ch06:37200368..37205677- functional_description:"Transmembrane protein 41B (AHRD V1 **-- TM41B_XENLA); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00008631g0003.1 protein AED:0.39 eAED:0.51 QI:155|0.5|0.44|0.77|0.87|0.88|9|0|763; (*GB) gi|225429462|ref|XP_002278761.1| (e_value=7e-144) PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera];; (*SWP) sp|Q3U0V1|FUBP2_MOUSE (e_value=4e-21) Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp PE=1 SV=2;; (*TAIR) AT2G25970.1 (e_value=4e-93) | Symbols: | KH domain-containing protein | chr2:11071844-11075604 REVERSE LENGTH=632;; (*ITAG) Solyc12g095960.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63401514-63405993 transcript_region:SL2.40ch12:63401514..63405993- go_terms:GO:0051010 functional_description:"Insulin-like growth factor 2 mRNA-binding protein 2 (AHRD V1 *-** IF2B2_PONAB); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051010 NbS00011490g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.8|0.8|0.75|0.8|5|0|319; (*GB) gi|295798058|emb|CBL87025.1| (e_value=0.0) CSN5 protein [Solanum lycopersicum];; (*SWP) sp|Q8LAZ7|CSN5B_ARATH (e_value=0.0) COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2;; (*TAIR) AT1G22920.2 (e_value=0.0) | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A | chr1:8109998-8111895 REVERSE LENGTH=351;; (*ITAG) Solyc11g017300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8163274-8168190 transcript_region:SL2.40ch11:8163274..8168190- functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00011490g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|0.66|1|1|3|0|82; (*GB) gi|297744431|emb|CBI37693.3| (e_value=1e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LAZ7|CSN5B_ARATH (e_value=1e-21) COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2;; (*TAIR) AT1G22920.1 (e_value=1e-22) | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A | chr1:8109882-8111895 REVERSE LENGTH=357;; (*ITAG) Solyc11g017300.1.1 (e_value=2e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8163274-8168190 transcript_region:SL2.40ch11:8163274..8168190- functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00037818g0007.1 protein AED:0.00 eAED:0.00 QI:156|1|1|1|1|1|2|448|108; (*GB) gi|255564172|ref|XP_002523083.1| (e_value=2e-46) catalytic, putative [Ricinus communis];; (*TAIR) AT3G62810.1 (e_value=9e-41) | Symbols: | complex 1 family protein / LVR family protein | chr3:23227763-23228180 FORWARD LENGTH=106;; (*ITAG) Solyc09g075100.2.1 (e_value=1e-65) genomic_reference:SL2.40ch09 gene_region:62402390-62405936 transcript_region:SL2.40ch09:62402390..62405936+ go_terms:GO:0003824 functional_description:"Catalytic/ oxidoreductase acting on NADH or NADPH (AHRD V1 **** B6U636_MAIZE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0003824 NbS00037818g0010.1 protein AED:0.32 eAED:0.43 QI:303|0.14|0.25|0.75|0.57|0.5|8|0|282 NbS00004080g0012.1 protein AED:0.04 eAED:0.04 QI:202|1|1|1|0|0.2|5|412|221; (*GB) gi|21553438|gb|AAM62531.1| (e_value=5e-57) unknown [Arabidopsis thaliana];; (*SWP) sp|Q8CBG9|RN170_MOUSE (e_value=3e-19) RING finger protein 170 OS=Mus musculus GN=Rnf170 PE=2 SV=1;; (*TAIR) AT4G33940.1 (e_value=4e-59) | Symbols: | RING/U-box superfamily protein | chr4:16266085-16267612 FORWARD LENGTH=262;; (*ITAG) Solyc01g103970.2.1 (e_value=6e-109) genomic_reference:SL2.40ch01 gene_region:84211290-84214938 transcript_region:SL2.40ch01:84211290..84214938+ go_terms:GO:0008270 functional_description:"RING finger protein 170 (AHRD V1 ***- C1BQ68_9MAXI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004080g0015.1 protein AED:0.16 eAED:0.16 QI:25|0.81|0.73|0.95|0.90|0.95|23|259|1146; (*GB) gi|255579679|ref|XP_002530679.1| (e_value=0.0) DNA helicase hus2, putative [Ricinus communis];; (*SWP) sp|Q8L840|RQL4A_ARATH (e_value=0.0) ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1;; (*TAIR) AT1G10930.1 (e_value=0.0) | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188;; (*ITAG) Solyc01g103960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84197683-84209378 transcript_region:SL2.40ch01:84197683..84209378+ go_terms:GO:0043138 functional_description:"ATP-dependent DNA helicase Q1 (AHRD V1 *-** C1GRE2_PARBA); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0043138 NbS00004080g0017.1 protein AED:0.24 eAED:0.24 QI:123|0.4|0.33|1|0.4|0.5|6|0|332; (*GB) gi|18418331|ref|NP_567943.1| (e_value=2e-39) RING/U-box domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT4G33940.1 (e_value=4e-42) | Symbols: | RING/U-box superfamily protein | chr4:16266085-16267612 FORWARD LENGTH=262;; (*ITAG) Solyc01g103980.2.1 (e_value=1e-100) genomic_reference:SL2.40ch01 gene_region:84215760-84219412 transcript_region:SL2.40ch01:84215760..84219412+ go_terms:GO:0008270 functional_description:"RING finger protein 170 (AHRD V1 *-*- B5X7S9_SALSA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004080g0018.1 protein AED:0.10 eAED:0.10 QI:0|0.9|0.63|1|0.9|0.81|11|0|1185; (*GB) gi|359486036|ref|XP_002267907.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253141 [Vitis vinifera];; (*TAIR) AT1G22930.1 (e_value=0.0) | Symbols: | T-complex protein 11 | chr1:8117521-8121854 FORWARD LENGTH=1131;; (*ITAG) Solyc01g103990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84219864-84227006 transcript_region:SL2.40ch01:84219864..84227006- functional_description:"T-complex protein 11 (AHRD V1 ***- D7KML1_ARALY); contains Interpro domain(s) IPR008862 T-complex 11 "; NbS00053516g0003.1 protein AED:0.14 eAED:0.15 QI:0|1|0|1|1|1|2|0|285; (*GB) gi|225434377|ref|XP_002276778.1| (e_value=1e-117) PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Vitis vinifera];; (*SWP) sp|Q9STF9|PP266_ARATH (e_value=4e-108) Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1;; (*TAIR) AT3G46870.1 (e_value=3e-109) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17263011-17264022 FORWARD LENGTH=257;; (*ITAG) Solyc09g092360.2.1 (e_value=2e-140) genomic_reference:SL2.40ch09 gene_region:66827771-66829521 transcript_region:SL2.40ch09:66827771..66829521- go_terms:GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270 NbS00046986g0006.1 protein AED:0.47 eAED:0.47 QI:0|0.42|0|0.75|0.85|0.87|8|0|307; (*GB) gi|41176619|gb|AAR99599.1| (e_value=4e-175) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q8RXD9|DPE2_ARATH (e_value=2e-148) 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1;; (*TAIR) AT2G40840.1 (e_value=1e-149) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=1e-174) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00017920g0010.1 protein AED:0.33 eAED:0.33 QI:114|1|1|1|1|1|7|191|353; (*GB) gi|359490081|ref|XP_003634027.1| (e_value=0.0) PREDICTED: probable isoaspartyl peptidase/L-asparaginase 3-like [Vitis vinifera];; (*SWP) sp|Q56W64|ASPG3_ARATH (e_value=1e-176) Probable isoaspartyl peptidase/L-asparaginase 3 OS=Arabidopsis thaliana GN=At5g61540 PE=2 SV=1;; (*TAIR) AT5G61540.1 (e_value=7e-178) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:24744994-24747142 FORWARD LENGTH=359;; (*ITAG) Solyc03g093440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48166952-48178089 transcript_region:SL2.40ch03:48166952..48178089+ go_terms:GO:0003948 functional_description:"N(4)-(Beta-n-acetylglucosaminyl)-l-asparaginase (AHRD V1 **** Q16VX6_AEDAE); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbS00017920g0014.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|0|0.25|4|0|237; (*ITAG) Solyc06g008150.2.1 (e_value=4e-54) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00017920g0004.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.11|1|1|9|0|471; (*ITAG) Solyc01g059760.1.1 (e_value=9e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00017920g0012.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|113205400|gb|AAU90303.2| (e_value=4e-15) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc08g016290.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00030685g0008.1 protein AED:0.00 eAED:0.00 QI:80|1|1|1|1|1|2|142|69; (*GB) gi|255556624|ref|XP_002519346.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G17580.1 (e_value=1e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6015276-6015518 FORWARD LENGTH=80;; (*ITAG) Solyc05g053180.2.1 (e_value=2e-38) genomic_reference:SL2.40ch05 gene_region:62454616-62455362 transcript_region:SL2.40ch05:62454616..62455362+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030685g0012.1 protein AED:0.92 eAED:0.92 QI:19|0|0|0.2|0|0.2|5|0|169 NbS00030685g0013.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0|3|0|177; (*GB) gi|312599845|gb|ADQ91848.1| (e_value=9e-85) late embryogenesis abundant protein group 9 protein [Arachis hypogaea];; (*TAIR) AT1G04560.1 (e_value=1e-80) | Symbols: | AWPM-19-like family protein | chr1:1245070-1245888 FORWARD LENGTH=186;; (*ITAG) Solyc05g053160.2.1 (e_value=4e-99) genomic_reference:SL2.40ch05 gene_region:62438344-62440293 transcript_region:SL2.40ch05:62438344..62440293- functional_description:"Plasma membrane associated protein (AHRD V1 ***- B6SJ93_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00030685g0007.1 protein AED:0.19 eAED:0.19 QI:85|1|1|1|1|1|3|312|123; (*GB) gi|225432191|ref|XP_002275097.1| (e_value=3e-44) PREDICTED: tRNA pseudouridine synthase A 1-like [Vitis vinifera];; (*TAIR) AT3G06950.1 (e_value=2e-40) | Symbols: | Pseudouridine synthase family protein | chr3:2192869-2194254 FORWARD LENGTH=323;; (*ITAG) Solyc05g053190.2.1 (e_value=5e-58) genomic_reference:SL2.40ch05 gene_region:62456075-62460586 transcript_region:SL2.40ch05:62456075..62460586- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase A (AHRD V1 **** B9XDA1_9BACT); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00011989g0006.1 protein AED:0.27 eAED:0.27 QI:383|0.85|0.5|1|0.85|0.75|8|0|576; (*GB) gi|255565968|ref|XP_002523972.1| (e_value=2e-180) RNA polymerase sigma factor rpoD1, putative [Ricinus communis];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=1e-73) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G08540.1 (e_value=8e-167) | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | RNApolymerase sigma subunit 2 | chr1:2703461-2706696 FORWARD LENGTH=572;; (*ITAG) Solyc01g081490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73199206-73204884 transcript_region:SL2.40ch01:73199206..73204884+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 *-*- Q59965_SYNP2); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00049881g0003.1 protein AED:0.31 eAED:0.31 QI:265|1|1|1|0|0.66|3|469|293; (*GB) gi|255585533|ref|XP_002533457.1| (e_value=7e-141) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q7F8R0|C3H14_ORYSJ (e_value=2e-102) Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=3e-64) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc10g078750.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59800183-59803268 transcript_region:SL2.40ch10:59800183..59803268+ go_terms:GO:0003723,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723,GO:0008270 NbS00001378g0003.1 protein AED:0.37 eAED:0.52 QI:0|0|0|1|0|0|3|0|92; (*GB) gi|9719730|gb|AAF97832.1|AC034107_15 (e_value=2e-27) Contains similarity to ethylene-inducible CTR1-like protein kinase from Lycopersicon esculentum gb|AF110518 and contains a eukaryotic protein kinase PF|00069 domain. ESTs gb|AI997309, gb|Z18004, gb|AV522689 come from this gene [Arabidopsis thaliana];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-16) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G18160.1 (e_value=4e-27) | Symbols: | Protein kinase superfamily protein | chr1:6249126-6253835 FORWARD LENGTH=992;; (*ITAG) Solyc03g119140.2.1 (e_value=2e-29) genomic_reference:SL2.40ch03 gene_region:61887750-61899889 transcript_region:SL2.40ch03:61887750..61899889+ go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712,GO:0004709 NbS00054256g0003.1 protein AED:0.25 eAED:0.25 QI:50|1|1|1|0.5|0.33|3|280|196; (*GB) gi|225443488|ref|XP_002270513.1| (e_value=7e-51) PREDICTED: uncharacterized protein LOC100256402 [Vitis vinifera];; (*TAIR) AT1G78995.1 (e_value=3e-44) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29715433-29716079 REVERSE LENGTH=159;; (*ITAG) Solyc10g086470.1.1 (e_value=5e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64600276-64604375 transcript_region:SL2.40ch10:64600276..64604375+ functional_description:"Chromosome 05 contig 1 DNA sequence (AHRD V1 *-*- Q018G6_OSTTA)"; NbS00016612g0003.1 protein AED:0.07 eAED:0.08 QI:2865|0.9|0.80|1|0.83|0.83|31|0|1438; (*GB) gi|225459364|ref|XP_002285808.1| (e_value=0.0) PREDICTED: acetyl-CoA carboxylase 1-like [Vitis vinifera];; (*SWP) sp|Q38970|ACC1_ARATH (e_value=0.0) Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1;; (*TAIR) AT1G36160.2 (e_value=0.0) | Symbols: ACC1 | acetyl-CoA carboxylase 1 | chr1:13534196-13543773 FORWARD LENGTH=2254;; (*ITAG) Solyc12g056940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00036907g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.9|0.81|1|1|0.81|11|0|405; (*GB) gi|225445178|ref|XP_002280736.1| (e_value=0.0) PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Vitis vinifera];; (*SWP) sp|P08165|ADRO_BOVIN (e_value=6e-90) NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3;; (*TAIR) AT4G32360.1 (e_value=6e-175) | Symbols: | Pyridine nucleotide-disulphide oxidoreductase family protein | chr4:15621550-15624711 FORWARD LENGTH=483;; (*ITAG) Solyc01g102490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83039083-83049084 transcript_region:SL2.40ch01:83039083..83049084+ go_terms:GO:0015039 functional_description:"NADPH adrenodoxin oxidoreductase fprA (NADPH-ferredoxin reductase) (AHRD V1 **-* A2VNR6_MYCTU); contains Interpro domain(s) IPR000759 Adrenodoxin reductase "; GO:0015039 NbS00036907g0007.1 protein AED:0.35 eAED:0.47 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|340806874|gb|AEK71511.1| (e_value=8e-41) hypothetical chloroplast RF2 [Lythrum flagellare];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=4e-42) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-36) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00036907g0006.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|82754667|gb|ABB90081.1| (e_value=9e-71) Ycf2 [Solanum tuberosum];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=3e-72) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=3e-59) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-73) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00047882g0001.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|2|0|512; (*GB) gi|262192727|gb|ACY30433.1| (e_value=6e-147) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=3e-20) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT2G44410.1 (e_value=2e-46) | Symbols: | RING/U-box superfamily protein | chr2:18328873-18330114 FORWARD LENGTH=413;; (*ITAG) Solyc06g051230.2.1 (e_value=2e-89) genomic_reference:SL2.40ch06 gene_region:30924444-30926046 transcript_region:SL2.40ch06:30924444..30926046+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TI40_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00049556g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.62|0.33|1|0.87|0.77|9|0|769; (*GB) gi|224121826|ref|XP_002318682.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P54774|CDC48_SOYBN (e_value=0.0) Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc03g112590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57029718-57040222 transcript_region:SL2.40ch03:57029718..57040222- go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0004176 NbS00015208g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|165; (*GB) gi|56797587|emb|CAI38917.1| (e_value=2e-112) putative WRKY transcription factor 10 [Nicotiana tabacum];; (*SWP) sp|Q93WU9|WRK51_ARATH (e_value=1e-36) Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1;; (*TAIR) AT5G64810.1 (e_value=1e-37) | Symbols: WRKY51, ATWRKY51 | WRKY DNA-binding protein 51 | chr5:25908415-25909687 FORWARD LENGTH=194;; (*ITAG) Solyc08g062490.2.1 (e_value=6e-86) genomic_reference:SL2.40ch08 gene_region:48364804-48366524 transcript_region:SL2.40ch08:48364804..48366524+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 16 (AHRD V1 **** C9DI05_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00015208g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|1171; (*GB) gi|343887282|dbj|BAK61828.1| (e_value=0.0) hypothetical protein [Citrus unshiu];; (*TAIR) AT5G20610.1 (e_value=8e-112) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc08g062500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48366574-48370063 transcript_region:SL2.40ch08:48366574..48370063- functional_description:"Unknown Protein (AHRD V1)"; NbS00020233g0004.1 protein AED:0.13 eAED:0.13 QI:700|0.87|0.77|1|1|1|9|232|533; (*GB) gi|224077102|ref|XP_002305132.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G28240.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581;; (*ITAG) Solyc10g009050.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3072014-3076867 transcript_region:SL2.40ch10:3072014..3076867- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *--- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00061455g0003.1 protein AED:0.13 eAED:0.13 QI:228|0|0.5|1|0|0|2|0|273; (*GB) gi|225464848|ref|XP_002271636.1| (e_value=6e-118) PREDICTED: probable CCR4-associated factor 1 homolog 9-like [Vitis vinifera];; (*SWP) sp|Q9LXM2|CAF1I_ARATH (e_value=6e-111) Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1;; (*TAIR) AT3G44260.1 (e_value=4e-112) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:15952213-15953055 REVERSE LENGTH=280;; (*ITAG) Solyc01g007840.2.1 (e_value=1e-131) genomic_reference:SL2.40ch01 gene_region:2006792-2007838 transcript_region:SL2.40ch01:2006792..2007838- go_terms:GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0000175 NbS00006592g0011.1 protein AED:0.04 eAED:0.04 QI:166|1|1|1|0|0|2|120|266; (*GB) gi|37572447|dbj|BAC98493.1| (e_value=4e-88) AG-motif binding protein-3 [Nicotiana tabacum];; (*SWP) sp|O49743|GATA4_ARATH (e_value=1e-61) GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1;; (*TAIR) AT3G60530.1 (e_value=8e-63) | Symbols: GATA4 | GATA transcription factor 4 | chr3:22373348-22374147 FORWARD LENGTH=240;; (*ITAG) Solyc10g018560.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:8688626-8690141 transcript_region:SL2.40ch10:8688626..8690141+ go_terms:GO:0031013,GO:0030674 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0031013,GO:0030674 NbS00006592g0012.1 protein AED:0.49 eAED:0.53 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-18) hypothetical protein [Nicotiana tabacum]; NbS00030237g0006.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.6|0.8|0.75|0.8|5|435|311; (*GB) gi|3914163|sp|Q42965.1|NRL4A_TOBAC (e_value=0.0) RecName: Full=Bifunctional nitrilase/nitrile hydratase NIT4A; Short=TNIT4A; AltName: Full=Cyanoalanine nitrilase A; AltName: Full=Nitrilase 4A;; (*SWP) sp|Q42965|NRL4A_TOBAC (e_value=0.0) Bifunctional nitrilase/nitrile hydratase NIT4A OS=Nicotiana tabacum GN=NIT4A PE=2 SV=1;; (*TAIR) AT5G22300.1 (e_value=0.0) | Symbols: NIT4, AtNIT4 | nitrilase 4 | chr5:7379401-7381764 FORWARD LENGTH=355;; (*ITAG) Solyc11g068730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50446387-50451004 transcript_region:SL2.40ch11:50446387..50451004- go_terms:GO:0016810,GO:0006807 functional_description:"Nitrilase 4A (AHRD V1 ***- Q5QGZ8_LUPAN); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0016810,GO:0006807 NbS00030237g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.33|1|1|1|3|0|251; (*GB) gi|224106479|ref|XP_002314180.1| (e_value=5e-29) methyl binding domain protein [Populus trichocarpa];; (*SWP) sp|Q9SNC0|MBD5_ARATH (e_value=1e-22) Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=MBD5 PE=1 SV=1;; (*TAIR) AT3G46580.1 (e_value=9e-24) | Symbols: MBD05, MBD5, ATMBD5 | methyl-CPG-binding domain protein 5 | chr3:17148397-17149328 FORWARD LENGTH=182;; (*ITAG) Solyc11g068740.1.1 (e_value=4e-75) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:50454198-50458939 transcript_region:SL2.40ch11:50454198..50458939+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 ***- A9PAN4_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00020811g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|101; (*GB) gi|147866710|emb|CAN78405.1| (e_value=7e-24) hypothetical protein VITISV_023174 [Vitis vinifera];; (*ITAG) Solyc04g079080.2.1 (e_value=3e-40) genomic_reference:SL2.40ch04 gene_region:61264421-61267652 transcript_region:SL2.40ch04:61264421..61267652+ go_terms:GO:0008290,GO:0005509 functional_description:"Calmodulin (AHRD V1 *-*- Q178H5_AEDAE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0008290,GO:0005509 NbS00020811g0012.1 protein AED:0.15 eAED:0.15 QI:532|0|0.33|1|1|1|3|258|36 NbS00020811g0013.1 protein AED:0.34 eAED:0.35 QI:547|0.75|0.76|0.84|0.75|0.69|13|0|377; (*GB) gi|225458593|ref|XP_002282663.1| (e_value=6e-112) PREDICTED: uncharacterized protein LOC100266011 [Vitis vinifera];; (*SWP) sp|Q99PI5|LPIN2_MOUSE (e_value=3e-59) Phosphatidate phosphatase LPIN2 OS=Mus musculus GN=Lpin2 PE=1 SV=2;; (*TAIR) AT5G42870.2 (e_value=1e-108) | Symbols: PAH2 | phosphatidic acid phosphohydrolase 2 | chr5:17185719-17189681 REVERSE LENGTH=925;; (*ITAG) Solyc04g079090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61268368-61273338 transcript_region:SL2.40ch04:61268368..61273338- functional_description:"Lipin family protein (AHRD V1 **-- D7MQT4_ARALY); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; NbS00004004g0004.1 protein AED:0.21 eAED:0.21 QI:51|0.81|0.94|1|0.93|0.94|17|333|797; (*GB) gi|5669157|gb|AAD46187.1| (e_value=0.0) plasma membrane proton ATPase [Nicotiana plumbaginifolia];; (*SWP) sp|P23980|PMA2_SOLLC (e_value=0.0) Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc08g078200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59200562-59206266 transcript_region:SL2.40ch08:59200562..59206266+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00057624g0011.1 protein AED:0.32 eAED:0.33 QI:186|1|0.8|1|1|1|5|0|193; (*GB) gi|388512163|gb|AFK44143.1| (e_value=3e-112) unknown [Lotus japonicus];; (*TAIR) AT5G11680.1 (e_value=1e-110) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3759463-3760634 FORWARD LENGTH=207;; (*ITAG) Solyc04g009190.2.1 (e_value=2e-124) genomic_reference:SL2.40ch04 gene_region:2692465-2695221 transcript_region:SL2.40ch04:2692465..2695221+ functional_description:"WW domain-binding protein 2 (AHRD V1 **-- WBP2_HUMAN)"; NbS00057624g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|359493719|ref|XP_002280905.2| (e_value=4e-37) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=5e-36) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=4e-37) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc04g077360.2.1 (e_value=7e-64) genomic_reference:SL2.40ch04 gene_region:59879181-59882240 transcript_region:SL2.40ch04:59879181..59882240+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00057624g0013.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.66|1|0.5|0.33|3|0|430; (*GB) gi|19875|emb|CAA46787.1| (e_value=0.0) glutamate-1-semialdehyde 2,1-aminomutase [Nicotiana tabacum];; (*SWP) sp|P31593|GSA_TOBAC (e_value=0.0) Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1;; (*TAIR) AT3G48730.1 (e_value=0.0) | Symbols: GSA2 | glutamate-1-semialdehyde 2,1-aminomutase 2 | chr3:18049697-18051550 FORWARD LENGTH=472;; (*ITAG) Solyc04g009200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2695320-2699163 transcript_region:SL2.40ch04:2695320..2699163- go_terms:GO:0005515,GO:0042286 functional_description:"Glutamate-1-semialdehyde-2 1-aminomutase (AHRD V1 **** D7MPQ2_ARALY); contains Interpro domain(s) IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase "; GO:0005515,GO:0042286 NbS00057624g0009.1 protein AED:0.58 eAED:0.58 QI:0|0.5|0.66|0.66|0|0.33|3|0|65 NbS00003157g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0.5|0.5|0|0|2|10|67 NbS00027327g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.66|1|0|0.33|3|209|404; (*GB) gi|225428558|ref|XP_002281050.1| (e_value=0.0) PREDICTED: UPF0496 protein At4g34320-like [Vitis vinifera];; (*SWP) sp|Q9SYZ7|U496A_ARATH (e_value=3e-168) UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1 SV=1;; (*TAIR) AT4G34320.1 (e_value=2e-169) | Symbols: | Protein of unknown function (DUF677) | chr4:16422436-16423824 FORWARD LENGTH=374;; (*ITAG) Solyc01g109380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88111929-88113295 transcript_region:SL2.40ch01:88111929..88113295- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00039362g0005.1 protein AED:0.38 eAED:0.43 QI:0|0.5|0.42|1|0.16|0.57|7|0|249; (*GB) gi|225458007|ref|XP_002276474.1| (e_value=4e-99) PREDICTED: HVA22-like protein i [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=2e-83) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.3 (e_value=1e-84) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015703-17016969 FORWARD LENGTH=285;; (*ITAG) Solyc04g081340.2.1 (e_value=2e-120) genomic_reference:SL2.40ch04 gene_region:62952319-62954648 transcript_region:SL2.40ch04:62952319..62954648+ functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 *--- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00019068g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0.33|0.33|1|1|3|0|140; (*GB) gi|77552759|gb|ABA95556.1| (e_value=5e-15) hypothetical protein LOC_Os11g47400 [Oryza sativa Japonica Group];; (*ITAG) Solyc00g172410.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:18067959-18070197 transcript_region:SL2.40ch00:18067959..18070197- functional_description:"DNA binding protein-like (AHRD V1 *--- Q6Z4I5_ORYSJ); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00019068g0008.1 protein AED:0.29 eAED:0.49 QI:0|0|0|1|0|0|4|0|154; (*ITAG) Solyc06g034070.1.1 (e_value=1e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20260573-20272515 transcript_region:SL2.40ch06:20260573..20272515- functional_description:"Helicase-like protein (AHRD V1 *-*- Q5VR06_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00019068g0108.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|331 NbS00019068g0105.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|424 NbS00044363g0002.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|484; (*GB) gi|255557699|ref|XP_002519879.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|P37034|Y1691_LEGPH (e_value=3e-14) Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2;; (*TAIR) AT1G31830.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc08g075710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57004882-57011338 transcript_region:SL2.40ch08:57004882..57011338+ go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME2_HELPE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00037191g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|225440870|ref|XP_002276587.1| (e_value=4e-52) PREDICTED: uncharacterized protein LOC100244210 [Vitis vinifera];; (*TAIR) AT3G52710.1 (e_value=5e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19534638-19535507 FORWARD LENGTH=289;; (*ITAG) Solyc10g083330.1.1 (e_value=5e-144) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:62486719-62487636 transcript_region:SL2.40ch10:62486719..62487636+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 *-*- Q84ZT8_TOBAC)"; NbS00037191g0006.1 protein AED:0.14 eAED:0.15 QI:148|0.77|0.8|1|0.66|0.5|10|811|383; (*GB) gi|359482492|ref|XP_002274180.2| (e_value=1e-137) PREDICTED: uncharacterized protein LOC100241207 [Vitis vinifera];; (*TAIR) AT3G11470.1 (e_value=2e-105) | Symbols: | 4'-phosphopantetheinyl transferase superfamily | chr3:3610261-3612094 REVERSE LENGTH=300;; (*ITAG) Solyc09g009960.2.1 (e_value=8e-157) genomic_reference:SL2.40ch09 gene_region:3412363-3416452 transcript_region:SL2.40ch09:3412363..3416452- go_terms:GO:0009059 functional_description:"4&apos-phosphopantetheinyl transferase family protein (AHRD V1 ***- D7LAN4_ARALY); contains Interpro domain(s) IPR008278 4'-phosphopantetheinyl transferase "; GO:0009059 NbS00011058g0001.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|407; (*GB) gi|30961941|gb|AAP40022.1| (e_value=0.0) callus-expressing factor [Nicotiana tabacum];; (*SWP) sp|Q6K7E6|ERF1_ORYSJ (e_value=2e-63) Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1;; (*TAIR) AT3G14230.2 (e_value=7e-62) | Symbols: RAP2.2 | related to AP2 2 | chr3:4737616-4739000 REVERSE LENGTH=375;; (*ITAG) Solyc03g123500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64386170-64388613 transcript_region:SL2.40ch03:64386170..64388613+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00035186g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|255572820|ref|XP_002527342.1| (e_value=7e-35) hypothetical protein RCOM_0482310 [Ricinus communis];; (*TAIR) AT5G09620.1 (e_value=2e-30) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:2983757-2985352 REVERSE LENGTH=531;; (*ITAG) Solyc02g091670.1.1 (e_value=4e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47486948-47487760 transcript_region:SL2.40ch02:47486948..47487760- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00037522g0006.1 protein AED:0.04 eAED:0.04 QI:293|0|0.66|0.66|0.5|0.33|3|356|310; (*GB) gi|225437366|ref|XP_002268658.1| (e_value=5e-63) PREDICTED: uncharacterized protein LOC100241933 [Vitis vinifera];; (*TAIR) AT4G02425.1 (e_value=3e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 29 Blast hits to 28 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1067531-1068663 REVERSE LENGTH=262;; (*ITAG) Solyc06g009120.2.1 (e_value=3e-112) genomic_reference:SL2.40ch06 gene_region:3071048-3074835 transcript_region:SL2.40ch06:3071048..3074835+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037522g0005.1 protein AED:0.04 eAED:0.04 QI:89|1|1|1|0.69|0.71|14|244|1012; (*GB) gi|297743876|emb|CBI36846.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22243|C3H31_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2;; (*TAIR) AT2G47680.1 (e_value=0.0) | Symbols: | zinc finger (CCCH type) helicase family protein | chr2:19545828-19550871 REVERSE LENGTH=1015;; (*ITAG) Solyc06g009070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3005956-3022364 transcript_region:SL2.40ch06:3005956..3022364+ go_terms:GO:0005524,GO:0008270,GO:0005622 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q16ZW5_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005524,GO:0008270,GO:0005622 NbS00047779g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.4|1|0.75|0.8|5|0|356; (*GB) gi|224126397|ref|XP_002319828.1| (e_value=5e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=1e-113) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=2e-124) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc07g064340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63755719-63759162 transcript_region:SL2.40ch07:63755719..63759162- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00017060g0109.1 protein AED:0.00 eAED:0.00 QI:190|1|1|1|1|1|3|271|172 NbS00017060g0108.1 protein AED:0.27 eAED:0.28 QI:159|0.5|0.33|1|0.5|1|3|534|54 NbS00053377g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.66|1|1|1|3|163|462; (*GB) gi|193290710|gb|ACF17663.1| (e_value=0.0) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=0.0) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc08g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62279956-62289714 transcript_region:SL2.40ch08:62279956..62289714- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00053377g0009.1 protein AED:0.31 eAED:0.31 QI:0|1|0.87|1|0.85|0.87|8|289|232; (*GB) gi|225460187|ref|XP_002279511.1| (e_value=2e-147) PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera];; (*SWP) sp|O80543|Y1280_ARATH (e_value=2e-137) Uncharacterized protein At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2;; (*TAIR) AT1G22800.1 (e_value=2e-138) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8072020-8074039 FORWARD LENGTH=355;; (*ITAG) Solyc10g012160.2.1 (e_value=2e-162) genomic_reference:SL2.40ch10 gene_region:4506386-4514163 transcript_region:SL2.40ch10:4506386..4514163- go_terms:GO:0005163,GO:0005245 functional_description:"Methyltransferase type 11 (AHRD V1 ***- A7HTX1_PARL1); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0005163,GO:0005245 NbS00035642g0001.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|224053735|ref|XP_002297953.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g066740.2.1 (e_value=5e-30) genomic_reference:SL2.40ch08 gene_region:52767871-52768984 transcript_region:SL2.40ch08:52767871..52768984- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR02_SOLCI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00036309g0002.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.2|1|1|5|0|135 NbS00036309g0004.1 protein AED:0.02 eAED:0.04 QI:0|1|0|1|1|1|2|0|193; (*GB) gi|224062011|ref|XP_002300710.1| (e_value=8e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|F4I0N3|Y1572_ARATH (e_value=3e-14) WEB family protein At1g75720 OS=Arabidopsis thaliana GN=At1g75720 PE=2 SV=1;; (*TAIR) AT1G75720.1 (e_value=9e-16) | Symbols: | Plant protein of unknown function (DUF827) | chr1:28434648-28435318 REVERSE LENGTH=197;; (*ITAG) Solyc04g081390.2.1 (e_value=1e-52) genomic_reference:SL2.40ch04 gene_region:62982388-62984072 transcript_region:SL2.40ch04:62982388..62984072- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00036309g0005.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|113205400|gb|AAU90303.2| (e_value=4e-25) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc01g049860.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:41719738-41721128 transcript_region:SL2.40ch01:41719738..41721128- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9FH43_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00015206g0002.1 protein AED:0.15 eAED:0.55 QI:0|0|0|1|0|0|3|0|223; (*ITAG) Solyc06g011460.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00015084g0005.1 protein AED:0.06 eAED:0.06 QI:17|0.85|0.75|1|0.57|0.62|8|0|548; (*GB) gi|225425507|ref|XP_002263966.1| (e_value=7e-161) PREDICTED: transcription factor ABORTED MICROSPORES-like [Vitis vinifera];; (*SWP) sp|Q9ZVX2|AMS_ARATH (e_value=4e-115) Transcription factor ABORTED MICROSPORES OS=Arabidopsis thaliana GN=AMS PE=1 SV=2;; (*TAIR) AT2G16910.1 (e_value=3e-116) | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:7331721-7334077 FORWARD LENGTH=571;; (*ITAG) Solyc08g062780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:49108548-49112020 transcript_region:SL2.40ch08:49108548..49112020+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00015084g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|113205274|gb|ABI34321.1| (e_value=6e-33) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00009482g0016.1 protein AED:0.12 eAED:0.12 QI:0|1|0.85|1|0.5|0.57|7|696|279; (*GB) gi|224101191|ref|XP_002312179.1| (e_value=2e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R890|MINP1_PONAB (e_value=1e-14) Multiple inositol polyphosphate phosphatase 1 OS=Pongo abelii GN=MINPP1 PE=2 SV=1;; (*TAIR) AT1G09870.1 (e_value=1e-136) | Symbols: | histidine acid phosphatase family protein | chr1:3205817-3208444 FORWARD LENGTH=487;; (*ITAG) Solyc05g052480.2.1 (e_value=9e-169) genomic_reference:SL2.40ch05 gene_region:61836481-61844845 transcript_region:SL2.40ch05:61836481..61844845+ go_terms:GO:0003993 functional_description:"Multiple inositol polyphosphate phosphatase (AHRD V1 ***- Q54ND5_DICDI); contains Interpro domain(s) IPR016274 Histidine acid phosphatase, eukaryotic "; GO:0003993 NbS00009482g0017.1 protein AED:0.28 eAED:0.28 QI:182|1|1|1|0.83|1|7|449|344; (*GB) gi|225448536|ref|XP_002276751.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 2 subunit alpha [Vitis vinifera];; (*SWP) sp|P56286|IF2A_SCHPO (e_value=1e-93) Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif211 PE=1 SV=1;; (*TAIR) AT2G40290.1 (e_value=3e-180) | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344;; (*ITAG) Solyc03g095840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit "; GO:0005515,GO:0003743 NbS00009482g0021.1 protein AED:0.28 eAED:0.30 QI:0|0.2|0|1|0.4|0.33|6|0|326; (*GB) gi|334186005|ref|NP_567033.2| (e_value=5e-106) dehydration-responsive protein-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9LYN3|PMTM_ARATH (e_value=1e-107) Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1;; (*TAIR) AT3G56080.1 (e_value=1e-108) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20810526-20812988 REVERSE LENGTH=610;; (*ITAG) Solyc06g051000.2.1 (e_value=9e-147) genomic_reference:SL2.40ch06 gene_region:30589869-30593046 transcript_region:SL2.40ch06:30589869..30593046+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00009482g0022.1 protein AED:0.35 eAED:0.43 QI:0|0.66|0.5|1|0.33|0.5|4|0|213; (*GB) gi|225448534|ref|XP_002273466.1| (e_value=3e-92) PREDICTED: probable methyltransferase PMT23 [Vitis vinifera];; (*SWP) sp|Q9LYN3|PMTM_ARATH (e_value=2e-78) Probable methyltransferase PMT22 OS=Arabidopsis thaliana GN=At3g56080 PE=3 SV=1;; (*TAIR) AT3G56080.1 (e_value=1e-79) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20810526-20812988 REVERSE LENGTH=610;; (*ITAG) Solyc06g051000.2.1 (e_value=1e-113) genomic_reference:SL2.40ch06 gene_region:30589869-30593046 transcript_region:SL2.40ch06:30589869..30593046+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00009482g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|579; (*GB) gi|297736565|emb|CBI25436.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=3e-126) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=7e-174) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc06g051010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:30593637-30595409 transcript_region:SL2.40ch06:30593637..30595409- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00031250g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0|0.5|2|228|84 NbS00031250g0008.1 protein AED:0.18 eAED:0.24 QI:0|0.33|0.5|1|0.66|0.5|4|0|130; (*GB) gi|194462395|gb|ACF72672.1| (e_value=5e-65) ribosomal protein L24 [Cucumis melo var. cantalupensis];; (*SWP) sp|A0L5Y4|RL24_MAGSM (e_value=2e-19) 50S ribosomal protein L24 OS=Magnetococcus sp. (strain MC-1) GN=rplX PE=3 SV=1;; (*TAIR) AT5G23535.1 (e_value=1e-63) | Symbols: | KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159;; (*ITAG) Solyc08g075850.2.1 (e_value=5e-74) genomic_reference:SL2.40ch08 gene_region:57094012-57098518 transcript_region:SL2.40ch08:57094012..57098518- go_terms:GO:0005515 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- Q9LT09_ARATH); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005515 NbS00052487g0001.1 protein AED:0.43 eAED:0.54 QI:106|0|0.5|1|1|1|2|0|84; (*GB) gi|255552368|ref|XP_002517228.1| (e_value=2e-36) ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q06450|ATP5E_IPOBA (e_value=5e-37) ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2;; (*TAIR) AT1G51650.1 (e_value=8e-37) | Symbols: | ATP synthase epsilon chain, mitochondrial | chr1:19152680-19153641 FORWARD LENGTH=70;; (*ITAG) Solyc12g055760.1.1 (e_value=5e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47102472-47105411 transcript_region:SL2.40ch12:47102472..47105411- go_terms:GO:0000275 functional_description:"ATP synthase subunit epsilon mitochondrial (AHRD V1 ***- D3PJA4_9MAXI); contains Interpro domain(s) IPR006721 ATPase, F1 complex, epsilon subunit, mitochondrial "; GO:0000275 NbS00052487g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0.2|0.16|6|0|770; (*GB) gi|357933563|dbj|BAL15048.1| (e_value=0.0) glutamate receptor 2.1 [Solanum lycopersicum];; (*SWP) sp|Q9SHV1|GLR22_ARATH (e_value=2e-92) Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1;; (*TAIR) AT2G24720.1 (e_value=1e-93) | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.2 | chr2:10522783-10525840 REVERSE LENGTH=920;; (*ITAG) Solyc06g063200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00023200g0007.1 protein AED:0.34 eAED:0.34 QI:735|0.83|0.84|1|0.91|0.84|13|277|357; (*GB) gi|334702287|gb|AEG89703.1| (e_value=0.0) polypyrimidine tract-binding protein 1 [Solanum tuberosum];; (*SWP) sp|Q6ICX4|PTBP3_ARATH (e_value=0.0) Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1;; (*TAIR) AT1G43190.2 (e_value=0.0) | Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=432;; (*ITAG) Solyc12g019750.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:11305474-11311216 transcript_region:SL2.40ch12:11305474..11311216- go_terms:GO:0003676,GO:0000166 functional_description:"Polypyrimidine tract binding protein 1 (AHRD V1 **-- Q9BUQ0_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00023200g0006.1 protein AED:0.32 eAED:0.32 QI:169|1|1|1|1|1|3|215|242; (*GB) gi|380702812|gb|AFD96388.1| (e_value=2e-120) small intrinsic protein-1 [Solanum tuberosum];; (*SWP) sp|Q9ATM2|SIP12_MAIZE (e_value=8e-68) Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1;; (*TAIR) AT3G04090.1 (e_value=3e-64) | Symbols: SIP1;1, SIP1A | small and basic intrinsic protein 1A | chr3:1072340-1074031 REVERSE LENGTH=240;; (*ITAG) Solyc12g019690.1.1 (e_value=2e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:11001676-11005751 transcript_region:SL2.40ch12:11001676..11005751- go_terms:GO:0015250 functional_description:"Aquaporin-8 (AHRD V1 *-*- C3KH11_ANOFI); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00030708g0007.1 protein AED:0.08 eAED:0.08 QI:82|1|1|1|0.9|0.90|11|192|944; (*GB) gi|380509271|gb|AFD64638.1| (e_value=0.0) sucrose-phosphate synthase B [Solanum lycopersicum];; (*SWP) sp|O04933|SPSA2_CRAPL (e_value=0.0) Probable sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1;; (*TAIR) AT1G04920.1 (e_value=0.0) | Symbols: ATSPS3F, SPS3F | sucrose phosphate synthase 3F | chr1:1391674-1395756 REVERSE LENGTH=1062;; (*ITAG) Solyc09g092130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66617015-66625125 transcript_region:SL2.40ch09:66617015..66625125- go_terms:GO:0005985,GO:0009058 functional_description:"Sucrose phosphate synthase (AHRD V1 ***- D6R6Y5_9LILI); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0005985,GO:0009058 NbS00030708g0008.1 protein AED:0.27 eAED:0.33 QI:0|1|0|1|0|0.5|2|0|257; (*GB) gi|255554723|ref|XP_002518399.1| (e_value=2e-138) alkaline phytoceramidase, putative [Ricinus communis];; (*SWP) sp|Q9D099|ACER3_MOUSE (e_value=8e-30) Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1;; (*TAIR) AT4G22330.1 (e_value=8e-139) | Symbols: ATCES1 | Alkaline phytoceramidase (aPHC) | chr4:11798483-11799549 FORWARD LENGTH=255;; (*ITAG) Solyc05g053740.2.1 (e_value=7e-150) genomic_reference:SL2.40ch05 gene_region:62913758-62915753 transcript_region:SL2.40ch05:62913758..62915753- go_terms:GO:0005515,GO:0070774 functional_description:"Alkaline ceramidase (AHRD V1 ***- Q17KM2_AEDAE); contains Interpro domain(s) IPR008901 Alkaline phytoceramidase "; GO:0005515,GO:0070774 NbS00010996g0001.1 protein AED:0.16 eAED:0.16 QI:210|1|1|1|0.2|0.16|6|1377|509; (*GB) gi|225436849|ref|XP_002270788.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Vitis vinifera];; (*SWP) sp|O49343|PP177_ARATH (e_value=4e-161) Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1;; (*TAIR) AT2G30780.1 (e_value=3e-162) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13116547-13118059 FORWARD LENGTH=452;; (*ITAG) Solyc07g053060.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58831095-58833870 transcript_region:SL2.40ch07:58831095..58833870- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HRN6_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000930g0009.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.33|3|0|242; (*GB) gi|357491407|ref|XP_003615991.1| (e_value=3e-61) Peroxidase [Medicago truncatula];; (*SWP) sp|P22195|PER1_ARAHY (e_value=3e-37) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G58400.1 (e_value=8e-38) | Symbols: | Peroxidase superfamily protein | chr5:23605357-23606967 REVERSE LENGTH=325;; (*ITAG) Solyc10g076190.1.1 (e_value=4e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58370523-58371664 transcript_region:SL2.40ch10:58370523..58371664- go_terms:GO:0055114 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00000930g0010.1 protein AED:0.09 eAED:0.09 QI:492|1|1|1|0.5|0.22|9|23|305; (*GB) gi|225439615|ref|XP_002267787.1| (e_value=0.0) PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SR86|AGT23_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1;; (*TAIR) AT3G08860.1 (e_value=0.0) | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696754-2699087 REVERSE LENGTH=481;; (*ITAG) Solyc10g076250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58474750-58478564 transcript_region:SL2.40ch10:58474750..58478564+ go_terms:GO:0030170 functional_description:"Aminotransferase like protein (AHRD V1 ***- Q0WWF1_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00016295g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|100 NbS00058762g0001.1 protein AED:0.14 eAED:0.14 QI:327|1|1|1|1|1|9|139|301; (*GB) gi|349731971|dbj|BAL03523.1| (e_value=0.0) endonuclease 1 [Solanum lycopersicum];; (*SWP) sp|Q9SXA6|ENDO1_ARATH (e_value=3e-162) Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1;; (*TAIR) AT1G11190.1 (e_value=2e-163) | Symbols: BFN1, ENDO1 | bifunctional nuclease i | chr1:3750338-3752696 REVERSE LENGTH=305;; (*ITAG) Solyc02g078910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38116631-38118812 transcript_region:SL2.40ch02:38116631..38118812- go_terms:GO:0000014,GO:0043765 functional_description:"Endonuclease (AHRD V1 **** Q6B782_SOLTU); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00058762g0007.1 protein AED:0.14 eAED:0.14 QI:330|1|0.77|1|0.87|0.77|9|0|577; (*GB) gi|255560820|ref|XP_002521423.1| (e_value=0.0) Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=2e-89) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT2G29990.1 (e_value=0.0) | Symbols: NDA2 | alternative NAD(P)H dehydrogenase 2 | chr2:12793562-12795913 REVERSE LENGTH=508;; (*ITAG) Solyc02g078900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38108392-38113405 transcript_region:SL2.40ch02:38108392..38113405- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00058762g0009.1 protein AED:0.49 eAED:0.49 QI:2|1|0.5|1|1|1|2|171|22 NbS00016578g0005.1 protein AED:0.70 eAED:0.91 QI:0|0|0|0.33|1|1|6|0|148 NbS00016578g0006.1 protein AED:0.09 eAED:0.09 QI:223|1|1|1|1|1|2|158|562; (*GB) gi|359477033|ref|XP_002281640.2| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 51-like [Vitis vinifera];; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc11g005770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:605006-607249 transcript_region:SL2.40ch11:605006..607249- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00016578g0110.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|345|595 NbS00048456g0002.1 protein AED:0.09 eAED:0.09 QI:298|1|1|1|0.77|0.6|10|295|1020; (*GB) gi|224100929|ref|XP_002312072.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54JE4|ODO1_DICDI (e_value=0.0) 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1;; (*TAIR) AT3G55410.1 (e_value=0.0) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00048456g0007.1 protein AED:0.31 eAED:0.31 QI:104|1|1|1|0.75|0.66|9|0|216; (*GB) gi|18447915|dbj|BAB84323.1| (e_value=1e-128) ras-related protein RAB8-2 [Nicotiana tabacum];; (*SWP) sp|P28186|RAE1C_ARATH (e_value=7e-121) Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1;; (*TAIR) AT3G46060.3 (e_value=5e-122) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216;; (*ITAG) Solyc04g011360.2.1 (e_value=6e-128) genomic_reference:SL2.40ch04 gene_region:3839267-3844110 transcript_region:SL2.40ch04:3839267..3844110- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C362_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00026485g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|0.88|1|1|1|9|201|307; (*GB) gi|11995005|dbj|BAB20032.1| (e_value=0.0) beta-cyanoalanine synthase like protein [Solanum tuberosum];; (*SWP) sp|O81155|CYSKP_SOLTU (e_value=6e-135) Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G61440.1 (e_value=0.0) | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368;; (*ITAG) Solyc01g094790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77957010-77959726 transcript_region:SL2.40ch01:77957010..77959726+ go_terms:GO:0008152,GO:0006535,GO:0005976 functional_description:"Cysteine synthase (AHRD V1 ***- Q9FS29_SOLTU); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0008152,GO:0006535,GO:0005976 NbS00026485g0002.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|225; (*ITAG) Solyc08g044370.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00011269g0004.1 protein AED:0.26 eAED:0.26 QI:191|0.94|0.89|1|0.77|0.78|19|0|801; (*GB) gi|27728145|gb|AAN15317.1| (e_value=0.0) isoamylase isoform 1 [Solanum tuberosum];; (*SWP) sp|O04196|ISOA1_ARATH (e_value=0.0) Isoamylase 1, chloroplastic OS=Arabidopsis thaliana GN=ISA1 PE=1 SV=1;; (*TAIR) AT2G39930.1 (e_value=0.0) | Symbols: ISA1, ATISA1 | isoamylase 1 | chr2:16666078-16672183 FORWARD LENGTH=783;; (*ITAG) Solyc07g014590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4925611-4940909 transcript_region:SL2.40ch07:4925611..4940909- go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- A7BWG1_9GAMM); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00025258g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|225433001|ref|XP_002284547.1| (e_value=8e-86) PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera];; (*TAIR) AT4G14430.1 (e_value=6e-80) | Symbols: IBR10, ATECI2, ECI2, ECHIB, PEC12 | indole-3-butyric acid response 10 | chr4:8304910-8305632 REVERSE LENGTH=240;; (*ITAG) Solyc06g053670.1.1 (e_value=5e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33000055-33000774 transcript_region:SL2.40ch06:33000055..33000774- go_terms:GO:0004165 functional_description:"Enoyl-CoA hydratase/isomerase family protein (AHRD V1 **** D7MH17_ARALY); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0004165 NbS00059786g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.66|0|1|0|0.5|4|0|204; (*GB) gi|255539785|ref|XP_002510957.1| (e_value=8e-107) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B6SGC5|CNR6_MAIZE (e_value=3e-84) Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1;; (*TAIR) AT5G51400.1 (e_value=5e-85) | Symbols: | PLAC8 family protein | chr5:20878784-20880036 REVERSE LENGTH=241;; (*ITAG) Solyc03g093200.2.1 (e_value=4e-126) genomic_reference:SL2.40ch03 gene_region:47837141-47842986 transcript_region:SL2.40ch03:47837141..47842986+ functional_description:"Os04g0461600 protein (Fragment) (AHRD V1 *-*- Q0JCM6_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00028492g0012.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|445; (*GB) gi|165972256|dbj|BAF99027.1| (e_value=0.0) UDP-glucose:sesaminol 2'-O-glucoside-O-glucosyltransferase [Sesamum indicum];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=1e-128) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT5G49690.1 (e_value=1e-65) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc03g078240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43774855-43776398 transcript_region:SL2.40ch03:43774855..43776398- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00028492g0010.1 protein AED:0.34 eAED:0.34 QI:0|0|0.5|1|0|0|2|85|60; (*GB) gi|224122662|ref|XP_002330437.1| (e_value=3e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT1G47570.1 (e_value=1e-17) | Symbols: | RING/U-box superfamily protein | chr1:17478919-17483229 FORWARD LENGTH=466;; (*ITAG) Solyc03g078230.2.1 (e_value=3e-23) genomic_reference:SL2.40ch03 gene_region:43759846-43774381 transcript_region:SL2.40ch03:43759846..43774381+ go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase CHFR (AHRD V1 ***- CHFR_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00028492g0011.1 protein AED:0.53 eAED:0.92 QI:0|0|0.2|0.8|0.25|0.4|5|0|140 NbS00048809g0001.1 protein AED:0.05 eAED:0.05 QI:248|1|1|1|1|1|10|360|397; (*GB) gi|225441461|ref|XP_002279787.1| (e_value=1e-180) PREDICTED: metal tolerance protein C2 [Vitis vinifera];; (*SWP) sp|Q6ICY4|MTPC2_ARATH (e_value=8e-178) Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=1 SV=1;; (*TAIR) AT3G12100.1 (e_value=6e-179) | Symbols: | Cation efflux family protein | chr3:3854741-3857270 REVERSE LENGTH=393;; (*ITAG) Solyc03g063320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:31609619-31633380 transcript_region:SL2.40ch03:31609619..31633380- go_terms:GO:0016020 functional_description:"Zinc transporter like 1 (AHRD V1 ***- Q9JKN2_MOUSE); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00026161g0003.1 protein AED:0.31 eAED:0.31 QI:263|0.5|0.66|1|0|0|3|0|84; (*GB) gi|224104185|ref|XP_002313350.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g079920.1.1 (e_value=7e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:60699626-60701221 transcript_region:SL2.40ch10:60699626..60701221- functional_description:"Transmembrane protein (AHRD V1 ***- D3BNN2_POLPA)"; NbS00011601g0009.1 protein AED:0.05 eAED:0.05 QI:254|1|1|1|1|1|3|590|176; (*GB) gi|77745460|gb|ABB02629.1| (e_value=9e-52) unknown [Solanum tuberosum];; (*TAIR) AT1G68490.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc06g069120.2.1 (e_value=8e-54) genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011601g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.8|1|0.92|0.93|15|0|924; (*GB) gi|356527811|ref|XP_003532500.1| (e_value=4e-145) PREDICTED: kinesin-1-like [Glycine max];; (*SWP) sp|O81635|ATK4_ARATH (e_value=2e-66) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G73860.1 (e_value=3e-129) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27771188-27775977 REVERSE LENGTH=1025;; (*ITAG) Solyc12g036810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:32899136-32904401 transcript_region:SL2.40ch12:32899136..32904401+ go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 *-*- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00043515g0004.1 protein AED:0.03 eAED:0.03 QI:182|1|1|1|0.66|0.5|4|503|467; (*GB) gi|225430840|ref|XP_002273483.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254794 [Vitis vinifera];; (*TAIR) AT4G36790.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:17336360-17338304 FORWARD LENGTH=489;; (*ITAG) Solyc02g063020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29620807-29622938 transcript_region:SL2.40ch02:29620807..29622938+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 ***- A4FJQ9_SACEN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00025901g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|226; (*GB) gi|224138900|ref|XP_002326718.1| (e_value=3e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|P54638|ARGE_DICDI (e_value=2e-71) Acetylornithine deacetylase OS=Dictyostelium discoideum GN=argE PE=1 SV=2;; (*TAIR) AT4G17830.1 (e_value=6e-133) | Symbols: | Peptidase M20/M25/M40 family protein | chr4:9915916-9918049 FORWARD LENGTH=440;; (*ITAG) Solyc08g076990.2.1 (e_value=2e-155) genomic_reference:SL2.40ch08 gene_region:58097110-58102792 transcript_region:SL2.40ch08:58097110..58102792- go_terms:GO:0016787,GO:0008152 functional_description:"Acetylornithine deacetylase (AHRD V1 ***- B6TIJ2_MAIZE); contains Interpro domain(s) IPR011650 Peptidase M20, dimerisation "; GO:0016787,GO:0008152 NbS00008383g0002.1 protein AED:0.08 eAED:0.08 QI:710|1|0.66|1|0|0|3|0|328; (*GB) gi|225423965|ref|XP_002279257.1| (e_value=4e-55) PREDICTED: ethylene-responsive transcription factor ERF118 [Vitis vinifera];; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=3e-26) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=2e-27) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc05g009450.1.1 (e_value=8e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:3621438-3622463 transcript_region:SL2.40ch05:3621438..3622463- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00002685g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.9|1|1|0.9|10|0|604; (*GB) gi|359488677|ref|XP_002273777.2| (e_value=0.0) PREDICTED: polyribonucleotide nucleotidyltransferase-like [Vitis vinifera];; (*SWP) sp|B9M1G5|PNP_GEOSF (e_value=5e-119) Polyribonucleotide nucleotidyltransferase OS=Geobacter sp. (strain FRC-32) GN=pnp PE=3 SV=1;; (*TAIR) AT5G14580.1 (e_value=0.0) | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991;; (*ITAG) Solyc02g086600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43834786-43843201 transcript_region:SL2.40ch02:43834786..43843201- go_terms:GO:0003729 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- Q1PVN2_9BACT); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0003729 NbS00012809g0003.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|1273; (*GB) gi|147865107|emb|CAN79409.1| (e_value=0.0) hypothetical protein VITISV_038451 [Vitis vinifera];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G07280.1 (e_value=0.0) | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192;; (*ITAG) Solyc09g098420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67507878-67511690 transcript_region:SL2.40ch09:67507878..67511690+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012809g0017.1 protein AED:0.04 eAED:0.04 QI:125|1|1|1|0.76|0.85|14|321|795; (*GB) gi|297745165|emb|CBI39157.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y4D2|DGLA_HUMAN (e_value=1e-12) Sn1-specific diacylglycerol lipase alpha OS=Homo sapiens GN=DAGLA PE=1 SV=3;; (*TAIR) AT1G05790.1 (e_value=0.0) | Symbols: | lipase class 3 family protein | chr1:1733039-1737365 FORWARD LENGTH=687;; (*ITAG) Solyc09g098450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67522113-67533735 transcript_region:SL2.40ch09:67522113..67533735+ go_terms:GO:0006629 functional_description:"Sn1-specific diacylglycerol lipase alpha (AHRD V1 *-*- B0X8K9_CULQU); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00012809g0013.1 protein AED:0.27 eAED:0.27 QI:158|0.5|1|1|0|0|3|381|54; (*GB) gi|388494592|gb|AFK35362.1| (e_value=3e-23) unknown [Lotus japonicus];; (*TAIR) AT5G55290.2 (e_value=3e-23) | Symbols: | ATPase, V0 complex, subunit E | chr5:22423037-22424086 REVERSE LENGTH=70;; (*ITAG) Solyc12g098720.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64475986-64478964 transcript_region:SL2.40ch12:64475986..64478964+ go_terms:GO:0033179 functional_description:"ATP synthase subunit H family protein (AHRD V1 ***- D7MKG2_ARALY); contains Interpro domain(s) IPR008389 ATPase, V0 complex, subunit E "; GO:0033179 NbS00012809g0019.1 protein AED:0.29 eAED:0.29 QI:14|0.75|0.44|1|0.75|0.66|9|0|412; (*GB) gi|297745178|emb|CBI39170.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B9DFG5|PTI13_ARATH (e_value=0.0) PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana GN=PTI13 PE=1 SV=1;; (*TAIR) AT3G59350.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:21932930-21934883 FORWARD LENGTH=408;; (*ITAG) Solyc12g098820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64535368-64540452 transcript_region:SL2.40ch12:64535368..64540452+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012809g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.71|1|0.83|0.71|7|244|460; (*GB) gi|297745181|emb|CBI39173.3| (e_value=9e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G43210.2 (e_value=2e-57) | Symbols: | Ubiquitin-like superfamily protein | chr2:17960942-17963560 FORWARD LENGTH=531;; (*ITAG) Solyc09g098550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67616259-67625847 transcript_region:SL2.40ch09:67616259..67625847+ functional_description:"UBX domain-containing protein (AHRD V1 *-*- D7LJY9_ARALY); contains Interpro domain(s) IPR001012 UBX "; NbS00012809g0010.1 protein AED:0.72 eAED:0.89 QI:0|0|0|0.4|1|1|5|0|84 NbS00051425g0011.1 protein AED:0.26 eAED:0.28 QI:448|0.57|0.75|1|0.57|0.62|8|591|325; (*GB) gi|148595722|emb|CAM12540.1| (e_value=2e-88) YA2 [Antirrhinum majus];; (*SWP) sp|Q93ZH2|NFYA3_ARATH (e_value=6e-46) Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2;; (*TAIR) AT1G72830.1 (e_value=5e-47) | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=340;; (*ITAG) Solyc08g062210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47964141-47973284 transcript_region:SL2.40ch08:47964141..47973284+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 **** B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700 NbS00051425g0009.1 protein AED:0.36 eAED:0.36 QI:213|1|1|1|0.75|1|5|413|255; (*GB) gi|224142915|ref|XP_002324777.1| (e_value=7e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|O81488|ALFL4_ARATH (e_value=3e-95) PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana GN=AL4 PE=1 SV=2;; (*TAIR) AT5G26210.1 (e_value=3e-96) | Symbols: AL4 | alfin-like 4 | chr5:9158566-9160221 REVERSE LENGTH=255;; (*ITAG) Solyc12g096040.1.1 (e_value=9e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63453325-63461014 transcript_region:SL2.40ch12:63453325..63461014- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00051425g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|341; (*GB) gi|255550119|ref|XP_002516110.1| (e_value=4e-161) protein with unknown function [Ricinus communis];; (*SWP) sp|Q96H78|S2544_HUMAN (e_value=7e-33) Solute carrier family 25 member 44 OS=Homo sapiens GN=SLC25A44 PE=2 SV=1;; (*TAIR) AT1G72820.1 (e_value=1e-148) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27403457-27404506 FORWARD LENGTH=349;; (*ITAG) Solyc12g096030.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63449427-63450461 transcript_region:SL2.40ch12:63449427..63450461+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00048891g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|682; (*GB) gi|225433302|ref|XP_002282386.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 [Vitis vinifera];; (*SWP) sp|Q9T0G7|SUVH9_ARATH (e_value=0.0) Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1;; (*TAIR) AT4G13460.2 (e_value=0.0) | Symbols: SDG22, SUVH9, SET22 | SU(VAR)3-9 homolog 9 | chr4:7824653-7826605 REVERSE LENGTH=650;; (*ITAG) Solyc09g090810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65573418-65575508 transcript_region:SL2.40ch09:65573418..65575508+ go_terms:GO:0005634 functional_description:"Euchromatic histone lysine N-methyltransferase 2 (AHRD V1 *-*- A2CG73_MOUSE); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00048891g0007.1 protein AED:0.20 eAED:0.20 QI:164|1|1|1|0|0.5|4|247|140; (*GB) gi|357439809|ref|XP_003590182.1| (e_value=2e-45) hypothetical protein MTR_1g045660 [Medicago truncatula];; (*TAIR) AT1G04555.1 (e_value=2e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1242743-1243949 FORWARD LENGTH=152;; (*ITAG) Solyc09g090820.2.1 (e_value=8e-70) genomic_reference:SL2.40ch09 gene_region:65582435-65586123 transcript_region:SL2.40ch09:65582435..65586123- functional_description:"Unknown Protein (AHRD V1)"; NbS00045887g0015.1 protein AED:0.05 eAED:0.06 QI:325|0.8|0.63|1|0.8|0.63|11|68|1807; (*GB) gi|356564929|ref|XP_003550699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100806232 [Glycine max];; (*TAIR) AT5G07980.1 (e_value=1e-65) | Symbols: | dentin sialophosphoprotein-related | chr5:2549432-2554669 REVERSE LENGTH=1501;; (*ITAG) Solyc12g038490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:35816135-35824240 transcript_region:SL2.40ch12:35816135..35824240- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00045887g0016.1 protein AED:0.42 eAED:0.42 QI:101|0.5|0.33|0.66|0|0|3|0|98; (*GB) gi|147795745|emb|CAN61046.1| (e_value=3e-40) hypothetical protein VITISV_006224 [Vitis vinifera];; (*SWP) sp|Q9SD88|ASTER_ARATH (e_value=1e-41) Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1;; (*TAIR) AT5G07960.1 (e_value=1e-42) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:2542350-2543253 FORWARD LENGTH=107;; (*ITAG) Solyc06g069520.2.1 (e_value=3e-51) genomic_reference:SL2.40ch06 gene_region:39682005-39684690 transcript_region:SL2.40ch06:39682005..39684690+ go_terms:GO:0005515 functional_description:"UPF0139 membrane protein At5g07960 (AHRD V1 ***- U139_ARATH); contains Interpro domain(s) IPR005351 Uncharacterised protein family UPF0139 "; GO:0005515 NbS00025673g0005.1 protein AED:0.27 eAED:0.29 QI:82|0.77|0.69|0.95|0.77|0.73|23|301|974; (*GB) gi|296081171|emb|CBI18197.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=0.0) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G76850.1 (e_value=0.0) | Symbols: SEC5A | exocyst complex component sec5 | chr1:28848013-28854282 FORWARD LENGTH=1090;; (*ITAG) Solyc12g056520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47821594-47838915 transcript_region:SL2.40ch12:47821594..47838915- functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q5SUZ6_MOUSE)"; NbS00002096g0011.1 protein AED:0.08 eAED:0.08 QI:114|1|1|1|1|1|4|131|330; (*GB) gi|206812328|gb|ACI22425.1| (e_value=0.0) pericarp peroxidase 3 [Litchi chinensis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=3e-173) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=2e-174) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc02g084780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42452623-42454443 transcript_region:SL2.40ch02:42452623..42454443- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00002096g0015.1 protein AED:0.17 eAED:0.17 QI:212|0.88|0.84|1|0.72|0.84|19|0|460; (*GB) gi|225431271|ref|XP_002268141.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266005 [Vitis vinifera];; (*TAIR) AT4G36440.1 (e_value=7e-177) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 41 Blast hits to 41 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17207213-17209873 REVERSE LENGTH=394;; (*ITAG) Solyc02g084810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42474993-42485655 transcript_region:SL2.40ch02:42474993..42485655- functional_description:"Unknown Protein (AHRD V1)"; NbS00002096g0010.1 protein AED:0.18 eAED:0.18 QI:142|0.5|0.8|1|1|1|5|119|337; (*GB) gi|206812328|gb|ACI22425.1| (e_value=0.0) pericarp peroxidase 3 [Litchi chinensis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=6e-172) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=4e-173) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc02g084780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42452623-42454443 transcript_region:SL2.40ch02:42452623..42454443- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00051375g0002.1 protein AED:0.31 eAED:0.31 QI:28|1|1|1|1|1|3|288|62; (*GB) gi|357476845|ref|XP_003608708.1| (e_value=9e-29) 40S ribosomal protein S30 [Medicago truncatula];; (*SWP) sp|P49689|RS30_ARATH (e_value=6e-28) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=4e-29) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=2e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00005292g0009.1 protein AED:0.13 eAED:0.13 QI:442|1|1|1|0.6|0.5|16|1017|417; (*GB) gi|255578061|ref|XP_002529901.1| (e_value=0.0) UDP-glucose 4-epimerase, putative [Ricinus communis];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=0.0) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=0.0) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc02g069580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34003786-34009927 transcript_region:SL2.40ch02:34003786..34009927- go_terms:GO:0048040,GO:0050373 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B1XPB1_SYNP2); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0048040,GO:0050373 NbS00005292g0010.1 protein AED:0.20 eAED:0.20 QI:182|0.87|0.66|1|0.87|0.88|9|0|771; (*GB) gi|225444167|ref|XP_002268516.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SA76|PPR64_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2 SV=1;; (*TAIR) AT1G30610.2 (e_value=0.0) | Symbols: EMB2279 | pentatricopeptide (PPR) repeat-containing protein | chr1:10846676-10850517 FORWARD LENGTH=978;; (*ITAG) Solyc02g069570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33993570-34003635 transcript_region:SL2.40ch02:33993570..34003635+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033346g0006.1 protein AED:0.24 eAED:0.24 QI:144|1|1|1|0|0.5|2|211|78; (*GB) gi|282848242|gb|ADB02902.1| (e_value=1e-39) mitochondrial import inner membrane translocase subunit Tim8/small zinc finger-like protein [Jatropha curcas];; (*SWP) sp|Q9XGY4|TIM8_ARATH (e_value=1e-32) Mitochondrial import inner membrane translocase subunit Tim8 OS=Arabidopsis thaliana GN=TIM8 PE=2 SV=1;; (*TAIR) AT5G50810.1 (e_value=8e-34) | Symbols: TIM8 | translocase inner membrane subunit 8 | chr5:20675875-20676505 REVERSE LENGTH=77;; (*ITAG) Solyc06g072600.2.1 (e_value=5e-45) genomic_reference:SL2.40ch06 gene_region:41162164-41163995 transcript_region:SL2.40ch06:41162164..41163995+ go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim8 (AHRD V1 ***- B6SQH6_MAIZE); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00033346g0007.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|0.66|0.75|4|0|370; (*GB) gi|356559470|ref|XP_003548022.1| (e_value=3e-179) PREDICTED: probable S-acyltransferase At3g26935-like [Glycine max];; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=2e-166) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=2e-167) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc03g097630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53410692-53417468 transcript_region:SL2.40ch03:53410692..53417468+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbC25806480g0001.1 protein AED:0.15 eAED:0.48 QI:0|0|0.5|1|0|0|2|146|94; (*GB) gi|350538187|ref|NP_001233819.1| (e_value=1e-26) xyloglucan endotransglucosylase-hydrolase XTH6 precursor [Solanum lycopersicum];; (*SWP) sp|Q9SJL9|XTH32_ARATH (e_value=9e-23) Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1;; (*TAIR) AT2G36870.1 (e_value=7e-24) | Symbols: XTH32 | xyloglucan endotransglucosylase/hydrolase 32 | chr2:15472869-15474630 REVERSE LENGTH=299;; (*ITAG) Solyc11g066270.1.1 (e_value=2e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49084774-49086878 transcript_region:SL2.40ch11:49084774..49086878+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 ***- C0IRI2_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00022754g0003.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|81|899; (*GB) gi|359484860|ref|XP_002274434.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g071680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56257679-56260595 transcript_region:SL2.40ch04:56257679..56260595- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00007768g0008.1 protein AED:0.14 eAED:0.15 QI:192|0.61|0.37|1|0.61|0.62|37|0|2671; (*GB) gi|147791766|emb|CAN75046.1| (e_value=0.0) hypothetical protein VITISV_023142 [Vitis vinifera];; (*SWP) sp|O75691|UTP20_HUMAN (e_value=3e-83) Small subunit processome component 20 homolog OS=Homo sapiens GN=UTP20 PE=1 SV=3;; (*TAIR) AT4G30990.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:15084456-15097860 FORWARD LENGTH=2599;; (*ITAG) Solyc09g092240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66714632-66734123 transcript_region:SL2.40ch09:66714632..66734123- go_terms:GO:0005488 functional_description:"Small subunit processome component 20 homolog (AHRD V1 **-- UTP20_MOUSE); contains Interpro domain(s) IPR011430 Down-regulated in metastasis "; GO:0005488 NbS00006421g0002.1 protein AED:0.10 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc07g064860.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:64067319-64068313 transcript_region:SL2.40ch07:64067319..64068313+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006421g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|11|464|510; (*GB) gi|4337044|gb|AAD18052.1| (e_value=0.0) molybdopterin synthase sulphurylase, partial [Nicotiana plumbaginifolia];; (*SWP) sp|Q9ZNW0|MOCS3_ARATH (e_value=0.0) Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1;; (*TAIR) AT5G55130.1 (e_value=0.0) | Symbols: CNX5, SIR1 | co-factor for nitrate, reductase and xanthine dehydrogenase 5 | chr5:22373374-22376028 REVERSE LENGTH=464;; (*ITAG) Solyc07g064850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64061522-64065149 transcript_region:SL2.40ch07:64061522..64065149- go_terms:GO:0004792 functional_description:"UBA/THIF-type NAD/FAD binding protein (AHRD V1 **-- Q02B12_SOLUE); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0004792 NbS00006421g0009.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|130 NbS00006421g0010.1 protein AED:0.43 eAED:0.45 QI:0|0|0|0.66|0|0.33|3|0|128 NbS00006421g0003.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|78 NbS00020870g0013.1 protein AED:0.42 eAED:0.45 QI:64|0.5|0.55|0.88|0.75|0.66|9|665|360; (*GB) gi|225452406|ref|XP_002273842.1| (e_value=4e-61) PREDICTED: uncharacterized protein LOC100247330 [Vitis vinifera];; (*TAIR) AT3G27770.1 (e_value=1e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 158 Blast hits to 157 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:10285818-10287474 REVERSE LENGTH=315;; (*ITAG) Solyc06g005250.2.1 (e_value=9e-65) genomic_reference:SL2.40ch06 gene_region:268706-271800 transcript_region:SL2.40ch06:268706..271800+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00020870g0004.1 protein AED:0.17 eAED:0.17 QI:877|0.92|0.86|1|0.78|0.86|15|205|250; (*GB) gi|3021513|emb|CAA65504.1| (e_value=5e-149) isocitrate dehydrogenase (NADP+) [Nicotiana tabacum];; (*SWP) sp|Q06197|IDHC_SOYBN (e_value=2e-126) Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2;; (*TAIR) AT5G14590.1 (e_value=2e-133) | Symbols: | Isocitrate/isopropylmalate dehydrogenase family protein | chr5:4703533-4706627 REVERSE LENGTH=485;; (*ITAG) Solyc02g086610.2.1 (e_value=3e-148) genomic_reference:SL2.40ch02 gene_region:43846929-43852398 transcript_region:SL2.40ch02:43846929..43852398+ go_terms:GO:0004450,GO:0005507 functional_description:"Isocitrate dehydrogenase-like protein (AHRD V1 **** Q8LPJ5_ARATH); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0004450,GO:0005507 NbS00020870g0011.1 protein AED:0.25 eAED:0.25 QI:86|1|1|1|0.75|0.6|5|439|108; (*GB) gi|156891145|gb|ABU96710.1| (e_value=2e-68) glutaredoxin [Solanum tuberosum];; (*SWP) sp|Q9ZR41|GLRX_SOLLC (e_value=5e-68) Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT5G40370.1 (e_value=9e-60) | Symbols: | Glutaredoxin family protein | chr5:16147826-16149052 REVERSE LENGTH=111;; (*ITAG) Solyc06g005260.2.1 (e_value=2e-70) genomic_reference:SL2.40ch06 gene_region:273131-274442 transcript_region:SL2.40ch06:273131..274442+ go_terms:GO:0015038 functional_description:"Cytoplasmic glutaredoxin thioltransferase glutathione-dependent disulfide oxidoreductase (AHRD V1 **** C4R934_PICPG); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0015038 NbS00017100g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|572; (*GB) gi|3108161|gb|AAC61852.1| (e_value=0.0) putative monosaccharide transporter 1 [Petunia x hybrida];; (*SWP) sp|Q9LT15|STP10_ARATH (e_value=0.0) Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1;; (*TAIR) AT3G19940.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:6938211-6939975 FORWARD LENGTH=514;; (*ITAG) Solyc01g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2369175-2373387 transcript_region:SL2.40ch01:2369175..2373387- go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00017100g0018.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|1|1|3|0|335; (*GB) gi|54261833|gb|AAV31183.1| (e_value=0.0) Putative FAD binding domain containing protein, identical [Solanum tuberosum];; (*TAIR) AT2G46760.1 (e_value=1e-173) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00017100g0015.1 protein AED:0.43 eAED:0.77 QI:0|0|0|1|0|0.5|2|0|65 NbS00017100g0017.1 protein AED:0.58 eAED:0.60 QI:0|0|0|1|0|0|2|0|117; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-19) hypothetical protein [Nicotiana tabacum]; NbS00017100g0016.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-22) hypothetical protein [Nicotiana tabacum]; NbS00025537g0004.1 protein AED:0.05 eAED:0.05 QI:45|1|1|1|1|1|10|141|481; (*GB) gi|296080910|emb|CBI18754.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04084|SCP31_ARATH (e_value=0.0) Serine carboxypeptidase-like 31 OS=Arabidopsis thaliana GN=SCPL31 PE=2 SV=2;; (*TAIR) AT1G11080.1 (e_value=0.0) | Symbols: scpl31 | serine carboxypeptidase-like 31 | chr1:3694917-3697759 REVERSE LENGTH=492;; (*ITAG) Solyc02g078690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37934055-37938656 transcript_region:SL2.40ch02:37934055..37938656- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TSK4_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00022513g0014.1 protein AED:0.11 eAED:0.11 QI:255|0.77|0.6|1|0.88|0.8|10|0|1750; (*GB) gi|30013669|gb|AAP03877.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum];; (*SWP) sp|Q9C5V5|GLR28_ARATH (e_value=0.0) Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2;; (*TAIR) AT2G29110.1 (e_value=0.0) | Symbols: ATGLR2.8, GLR2.8 | glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947;; (*ITAG) Solyc06g063200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00022513g0019.1 protein AED:0.19 eAED:0.22 QI:239|0.4|0.33|1|0.6|0.5|6|0|619; (*GB) gi|296083773|emb|CBI23990.3| (e_value=5e-150) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFN5|GLR25_ARATH (e_value=2e-69) Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2;; (*TAIR) AT5G11210.1 (e_value=6e-71) | Symbols: ATGLR2.5, GLR2.5 | glutamate receptor 2.5 | chr5:3571214-3574537 REVERSE LENGTH=829;; (*ITAG) Solyc06g063200.1.1 (e_value=4e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00022513g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|315258233|gb|ADT91695.1| (e_value=3e-133) mitogen-activated protein kinase kinase 2 [Nicotiana attenuata];; (*SWP) sp|Q8RXG3|M2K5_ARATH (e_value=5e-118) Mitogen-activated protein kinase kinase 5 OS=Arabidopsis thaliana GN=MKK5 PE=1 SV=2;; (*TAIR) AT3G21220.1 (e_value=4e-119) | Symbols: ATMKK5, ATMAP2K_ALPHA, MAP2K_A, MKK5, ATMEK5, MEK5 | MAP kinase kinase 5 | chr3:7445917-7446963 FORWARD LENGTH=348;; (*ITAG) Solyc03g123800.1.1 (e_value=6e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64579230-64580309 transcript_region:SL2.40ch03:64579230..64580309- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase kinase (AHRD V1 ***- Q7XAC9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022513g0018.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|0|0|4|0|252; (*GB) gi|357933569|dbj|BAL15051.1| (e_value=4e-63) glutamate receptor 2.4 [Solanum lycopersicum];; (*SWP) sp|Q9C5V5|GLR28_ARATH (e_value=7e-21) Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2;; (*TAIR) AT2G29110.1 (e_value=5e-22) | Symbols: ATGLR2.8, GLR2.8 | glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947;; (*ITAG) Solyc06g063200.1.1 (e_value=6e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00022471g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|263; (*GB) gi|48375046|gb|AAT42190.1| (e_value=2e-31) putative proline-rich protein [Nicotiana tabacum];; (*TAIR) AT2G10940.2 (e_value=8e-30) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:4311160-4312035 REVERSE LENGTH=291;; (*ITAG) Solyc12g009650.1.1 (e_value=4e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2922153-2923552 transcript_region:SL2.40ch12:2922153..2923552- go_terms:GO:0005199,GO:0006869 functional_description:"Proline rich protein (Fragment) (AHRD V1 *--- P93274_MALDO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005199,GO:0006869 NbS00022471g0006.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|685; (*GB) gi|356565167|ref|XP_003550816.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100783258 [Glycine max];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=7e-54) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=0.0) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc12g009640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2917443-2920250 transcript_region:SL2.40ch12:2917443..2920250+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00042354g0001.1 protein AED:0.11 eAED:0.11 QI:968|0.85|0.87|1|0.28|0.37|8|158|166; (*ITAG) Solyc02g083130.2.1 (e_value=9e-32) genomic_reference:SL2.40ch02 gene_region:41218468-41222010 transcript_region:SL2.40ch02:41218468..41222010+ functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00042354g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|359497412|ref|XP_003635507.1| (e_value=4e-98) PREDICTED: uncharacterized protein LOC100852615 [Vitis vinifera];; (*TAIR) AT4G35720.1 (e_value=2e-51) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16927972-16928949 FORWARD LENGTH=325;; (*ITAG) Solyc02g083120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41214861-41215814 transcript_region:SL2.40ch02:41214861..41215814+ functional_description:"CM0216.240.nc protein (AHRD V1 ***- B0BLH5_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00042681g0007.1 protein AED:0.10 eAED:0.10 QI:155|1|1|1|1|1|4|687|266 NbS00042681g0001.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|1|1|3|0|347; (*GB) gi|297744129|emb|CBI37099.3| (e_value=4e-94) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=3e-69) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT2G03200.1 (e_value=2e-70) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:966506-967891 REVERSE LENGTH=461;; (*ITAG) Solyc05g056450.2.1 (e_value=9e-119) genomic_reference:SL2.40ch05 gene_region:64884868-64887093 transcript_region:SL2.40ch05:64884868..64887093- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00052590g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|1067; (*GB) gi|225462116|ref|XP_002263233.1| (e_value=0.0) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-105) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G11010.1 (e_value=4e-164) | Symbols: AtRLP34, RLP34 | receptor like protein 34 | chr3:3450988-3453672 REVERSE LENGTH=894;; (*ITAG) Solyc07g005150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00052590g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|62; (*GB) gi|225431910|ref|XP_002276776.1| (e_value=5e-26) PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=9e-25) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06700.3 (e_value=7e-26) | Symbols: | Ribosomal L29e protein family | chr3:2117519-2117800 REVERSE LENGTH=61;; (*ITAG) Solyc05g053440.2.1 (e_value=3e-28) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbS00018510g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|375|328; (*GB) gi|255545216|ref|XP_002513669.1| (e_value=2e-55) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G23950.1 (e_value=5e-43) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:8082789-8083448 FORWARD LENGTH=219;; (*ITAG) Solyc03g025340.1.1 (e_value=6e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7153156-7154205 transcript_region:SL2.40ch03:7153156..7154205- functional_description:"C2 domain-containing protein (AHRD V1 *--- Q5DVL6_HORVD); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00018510g0011.1 protein AED:0.00 eAED:0.00 QI:210|1|1|1|0|0|2|120|373; (*GB) gi|255545218|ref|XP_002513670.1| (e_value=4e-125) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SMU4|U496N_ARATH (e_value=1e-91) UPF0496 protein At3g49070 OS=Arabidopsis thaliana GN=At3g49070 PE=2 SV=1;; (*TAIR) AT3G49070.1 (e_value=1e-92) | Symbols: | Protein of unknown function (DUF677) | chr3:18192479-18193729 REVERSE LENGTH=416;; (*ITAG) Solyc03g025330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7148910-7151371 transcript_region:SL2.40ch03:7148910..7151371- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00018510g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|7415599|dbj|BAA93453.1| (e_value=0.0) acyltransferase homolog [Petunia x hybrida];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=5e-128) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT5G23940.1 (e_value=4e-129) | Symbols: EMB3009, PEL3, DCR | HXXXD-type acyl-transferase family protein | chr5:8076616-8079677 REVERSE LENGTH=484;; (*ITAG) Solyc03g025320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7141066-7144134 transcript_region:SL2.40ch03:7141066..7144134- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00018510g0015.1 protein AED:0.30 eAED:0.44 QI:402|0.66|0.25|1|1|1|4|0|185; (*ITAG) Solyc03g025310.2.1 (e_value=5e-16) genomic_reference:SL2.40ch03 gene_region:7131663-7139608 transcript_region:SL2.40ch03:7131663..7139608+ go_terms:GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D4TUR0_9NOST); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0015031,GO:0016021 NbS00018510g0007.1 protein AED:0.65 eAED:0.83 QI:0|0|0|0.5|1|1|2|0|67 NbS00024132g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|0.5|0.33|3|0|235; (*GB) gi|225428900|ref|XP_002282529.1| (e_value=4e-104) PREDICTED: receptor protein kinase-like protein At4g34220-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=4e-93) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=3e-94) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc06g073240.2.1 (e_value=1e-145) genomic_reference:SL2.40ch06 gene_region:41521151-41523182 transcript_region:SL2.40ch06:41521151..41523182- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00024132g0002.1 protein AED:0.36 eAED:0.36 QI:98|1|0.71|1|0.5|0.42|7|0|261; (*GB) gi|255576019|ref|XP_002528905.1| (e_value=4e-143) tRNA-dihydrouridine synthase, putative [Ricinus communis];; (*SWP) sp|Q9NX74|DUS2L_HUMAN (e_value=7e-85) tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2L PE=1 SV=1;; (*TAIR) AT3G49640.1 (e_value=7e-138) | Symbols: | Aldolase-type TIM barrel family protein | chr3:18400480-18402809 REVERSE LENGTH=329;; (*ITAG) Solyc06g073230.2.1 (e_value=5e-142) genomic_reference:SL2.40ch06 gene_region:41513600-41520828 transcript_region:SL2.40ch06:41513600..41520828+ go_terms:GO:0005515,GO:0017150 functional_description:"tRNA-dihydrouridine synthase 2-like protein (AHRD V1 **** Q54QJ2_DICDI); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0005515,GO:0017150 NbS00047831g0004.1 protein AED:0.17 eAED:0.17 QI:121|0.6|0.5|1|0.6|0.5|6|280|535; (*GB) gi|38096048|gb|AAR10887.1| (e_value=0.0) inosine-5'-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SA34|IMDH2_ARATH (e_value=0.0) Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1;; (*TAIR) AT1G16350.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr1:5590951-5592872 FORWARD LENGTH=502;; (*ITAG) Solyc10g079500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60360530-60363081 transcript_region:SL2.40ch10:60360530..60363081+ go_terms:GO:0008152,GO:0055114 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- A7XZM6_CAMSI); contains Interpro domain(s) IPR005990 IMP dehydrogenase "; GO:0008152,GO:0055114 NbS00011675g0012.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|0.66|1|4|0|501; (*GB) gi|359770105|gb|AEV66151.1| (e_value=0.0) nitrate reductase [Nicotiana tabacum];; (*SWP) sp|P36859|NIA_PETHY (e_value=0.0) Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1;; (*TAIR) AT1G37130.1 (e_value=0.0) | Symbols: NIA2, B29, NIA2-1, CHL3, NR, NR2, ATNR2 | nitrate reductase 2 | chr1:14158617-14161652 FORWARD LENGTH=917;; (*ITAG) Solyc11g013810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7173973-7178090 transcript_region:SL2.40ch11:7173973..7178090- go_terms:GO:0009055,GO:0020037,GO:0055114 functional_description:"Nitrate reductase (AHRD V1 ***- Q8LT13_SOLTU); contains Interpro domain(s) IPR012137 Nitrate reductase NADH dependant "; GO:0009055,GO:0020037,GO:0055114 NbS00011675g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.87|0.88|1|1|1|9|422|356; (*GB) gi|225460464|ref|XP_002272602.1| (e_value=5e-171) PREDICTED: magnesium transporter NIPA2 [Vitis vinifera];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=7e-66) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT2G21120.1 (e_value=4e-121) | Symbols: | Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328;; (*ITAG) Solyc11g016940.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7599764-7604926 transcript_region:SL2.40ch11:7599764..7604926- functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C5FBJ1_NANOT); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00044226g0015.1 protein AED:0.17 eAED:0.20 QI:0|0.25|0|1|0.5|0.4|5|0|669; (*GB) gi|359491274|ref|XP_002280505.2| (e_value=0.0) PREDICTED: formin-like protein 8-like [Vitis vinifera];; (*SWP) sp|O04532|FH8_ARATH (e_value=2e-160) Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1;; (*TAIR) AT1G70140.1 (e_value=2e-161) | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26415048 REVERSE LENGTH=760;; (*ITAG) Solyc03g113710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57830474-57833099 transcript_region:SL2.40ch03:57830474..57833099- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00044226g0016.1 protein AED:0.22 eAED:0.22 QI:298|0.66|0.5|1|0.66|0.5|4|0|279; (*GB) gi|297733853|emb|CBI15100.3| (e_value=9e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BT14|CNOT4_MOUSE (e_value=2e-12) CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2;; (*TAIR) AT3G48070.1 (e_value=8e-43) | Symbols: | RING/U-box superfamily protein | chr3:17750878-17751978 FORWARD LENGTH=319;; (*ITAG) Solyc03g113700.2.1 (e_value=7e-94) genomic_reference:SL2.40ch03 gene_region:57821433-57823256 transcript_region:SL2.40ch03:57821433..57823256+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00044226g0008.1 protein AED:0.20 eAED:0.26 QI:0|0|0|1|1|1|3|0|449; (*GB) gi|225436642|ref|XP_002276041.1| (e_value=0.0) PREDICTED: ABC transporter G family member 23 [Vitis vinifera];; (*SWP) sp|Q3E9B8|AB23G_ARATH (e_value=1e-158) ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1;; (*TAIR) AT5G19410.1 (e_value=9e-160) | Symbols: | ABC-2 type transporter family protein | chr5:6545237-6547111 REVERSE LENGTH=624;; (*ITAG) Solyc03g113690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57814675-57816651 transcript_region:SL2.40ch03:57814675..57816651+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 23 (AHRD V1 ***- AB23G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00044226g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|359472798|ref|XP_002274984.2| (e_value=3e-50) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9SHZ8|PP168_ARATH (e_value=4e-23) Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1;; (*TAIR) AT2G22070.1 (e_value=3e-24) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786;; (*ITAG) Solyc06g066380.1.1 (e_value=6e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00044226g0005.1 protein AED:0.43 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|88; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=8e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74630.1 (e_value=3e-13) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28030521-28032452 FORWARD LENGTH=643;; (*ITAG) Solyc06g066380.1.1 (e_value=5e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00057433g0003.1 protein AED:0.00 eAED:0.00 QI:302|1|1|1|1|1|2|429|126; (*ITAG) Solyc06g063300.2.1 (e_value=4e-45) genomic_reference:SL2.40ch06 gene_region:36393612-36399129 transcript_region:SL2.40ch06:36393612..36399129+ go_terms:GO:0004842 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00019694g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.70|0.71|0.85|0.77|0.82|28|0|1171; (*GB) gi|222635614|gb|EEE65746.1| (e_value=0.0) hypothetical protein OsJ_21402 [Oryza sativa Japonica Group];; (*SWP) sp|Q02440|MYO5A_CHICK (e_value=3e-142) Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1;; (*TAIR) AT1G54560.1 (e_value=0.0) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc06g083960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbC24653347g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|75241167|sp|Q84LF0.1|5EAS2_NICAT (e_value=3e-48) RecName: Full=5-epi-aristolochene synthase 2; Short=NaEAS37;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=1e-49) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=4e-14) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101170.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00007160g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc04g054340.1.1 (e_value=2e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:51490617-51490868 transcript_region:SL2.40ch04:51490617..51490868+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007160g0008.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|0.33|0.5|4|0|170; (*GB) gi|224083771|ref|XP_002307118.1| (e_value=4e-76) predicted protein [Populus trichocarpa];; (*TAIR) AT2G22120.2 (e_value=3e-72) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:9394026-9396979 FORWARD LENGTH=363;; (*ITAG) Solyc05g051800.2.1 (e_value=2e-96) genomic_reference:SL2.40ch05 gene_region:61323948-61327520 transcript_region:SL2.40ch05:61323948..61327520+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00007160g0001.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|1|1|2|0|193; (*ITAG) Solyc04g011550.2.1 (e_value=5e-18) genomic_reference:SL2.40ch04 gene_region:3982374-3984026 transcript_region:SL2.40ch04:3982374..3984026+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042039g0001.1 protein AED:0.01 eAED:0.01 QI:1962|0|0.5|1|0|0.5|2|4|183; (*GB) gi|224133178|ref|XP_002327979.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59490.2 (e_value=3e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:21984660-21986262 REVERSE LENGTH=293;; (*ITAG) Solyc11g045210.1.1 (e_value=3e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36943235-36951548 transcript_region:SL2.40ch11:36943235..36951548+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042039g0010.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.25|1|0|0|4|0|169; (*GB) gi|255556850|ref|XP_002519458.1| (e_value=3e-43) carbonic anhydrase, putative [Ricinus communis];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=2e-32) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT1G08080.1 (e_value=2e-40) | Symbols: ATACA7, ACA7 | alpha carbonic anhydrase 7 | chr1:2517022-2518546 REVERSE LENGTH=275;; (*ITAG) Solyc09g008420.2.1 (e_value=5e-58) genomic_reference:SL2.40ch09 gene_region:1871903-1876525 transcript_region:SL2.40ch09:1871903..1876525+ go_terms:GO:0004089 functional_description:"Carbonic anhydrase (Carbonate dehydratase) (AHRD V1 **** C1DTU5_SULAA); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0004089 NbS00042039g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.66|1|0.25|0.33|9|650|220; (*GB) gi|4105798|gb|AAD02556.1| (e_value=2e-81) PGPD14 [Petunia x hybrida];; (*SWP) sp|O14099|YERG_SCHPO (e_value=1e-22) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT5G22920.1 (e_value=2e-62) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:7665143-7667031 FORWARD LENGTH=291;; (*ITAG) Solyc09g008430.2.1 (e_value=3e-85) genomic_reference:SL2.40ch09 gene_region:1876963-1881169 transcript_region:SL2.40ch09:1876963..1881169- go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q10RT9_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00012490g0007.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0.25|4|0|662; (*GB) gi|364285583|gb|AEW48209.1| (e_value=1e-116) disease resistance protein RGH5 [Solanum huancabambense];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=4e-70) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=6e-58) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc12g009450.1.1 (e_value=4e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00012490g0008.1 protein AED:0.40 eAED:0.40 QI:0|0.5|0.33|1|0|0.33|3|238|130; (*ITAG) Solyc12g009450.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00029089g0005.1 protein AED:0.23 eAED:0.23 QI:215|0.85|0.86|1|0.85|0.86|15|592|331; (*GB) gi|356567605|ref|XP_003552008.1| (e_value=3e-177) PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max];; (*SWP) sp|Q0WPE9|NAT7_ARATH (e_value=6e-161) Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2;; (*TAIR) AT1G60030.1 (e_value=5e-162) | Symbols: ATNAT7, NAT7 | nucleobase-ascorbate transporter 7 | chr1:22113993-22116648 REVERSE LENGTH=538;; (*ITAG) Solyc05g006020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:754456-759784 transcript_region:SL2.40ch05:754456..759784+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00044749g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.25|0.2|1|0|0|5|322|399; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=2e-121) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=6e-123) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26330.1 (e_value=1e-85) | Symbols: CYP71B37 | cytochrome P450, family 71, subfamily B, polypeptide 37 | chr3:9646873-9648536 REVERSE LENGTH=500;; (*ITAG) Solyc08g005650.2.1 (e_value=3e-160) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014598g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|225452173|ref|XP_002270738.1| (e_value=2e-54) PREDICTED: uncharacterized protein LOC100249110 [Vitis vinifera];; (*TAIR) AT3G27250.1 (e_value=7e-42) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40800.1); Has 104 Blast hits to 104 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10061633-10062481 FORWARD LENGTH=282;; (*ITAG) Solyc02g093890.1.1 (e_value=2e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49173963-49174790 transcript_region:SL2.40ch02:49173963..49174790- functional_description:"Unknown Protein (AHRD V1)"; NbS00014598g0002.1 protein AED:0.25 eAED:0.25 QI:334|1|1|1|0.83|0.85|7|562|269; (*GB) gi|356511550|ref|XP_003524488.1| (e_value=5e-180) PREDICTED: cytochrome c1-1, heme protein, mitochondrial-like [Glycine max];; (*SWP) sp|P25076|CY11_SOLTU (e_value=2e-179) Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1;; (*TAIR) AT5G40810.1 (e_value=2e-168) | Symbols: | Cytochrome C1 family | chr5:16340200-16342327 FORWARD LENGTH=307;; (*ITAG) Solyc02g093900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49178107-49182974 transcript_region:SL2.40ch02:49178107..49182974- go_terms:GO:0045153 functional_description:"Cytochrome c1 (AHRD V1 **** Q9FKS5_ARATH); contains Interpro domain(s) IPR002326 Cytochrome c1 "; GO:0045153 NbS00041090g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|255550075|ref|XP_002516088.1| (e_value=7e-24) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g011440.1.1 (e_value=2e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:7277414-7278070 transcript_region:SL2.40ch06:7277414..7278070- functional_description:"Unknown Protein (AHRD V1)"; NbS00016878g0003.1 protein AED:0.06 eAED:0.06 QI:105|1|1|1|0.6|0.5|6|190|630; (*GB) gi|359474723|ref|XP_002270533.2| (e_value=0.0) PREDICTED: ABC transporter G family member 14-like [Vitis vinifera];; (*SWP) sp|Q9C6W5|AB14G_ARATH (e_value=0.0) ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1;; (*TAIR) AT1G31770.1 (e_value=0.0) | Symbols: ABCG14 | ATP-binding cassette 14 | chr1:11375252-11377644 REVERSE LENGTH=648;; (*ITAG) Solyc08g075430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56730208-56733305 transcript_region:SL2.40ch08:56730208..56733305- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00048654g0004.1 protein AED:0.15 eAED:0.19 QI:80|0.71|0.5|1|0.57|0.62|8|0|510; (*GB) gi|33357023|pdb|1HX9|A (e_value=4e-178) Chain A, Crystal Structure Of Teas W273s Form 1;; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=1e-177) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.1 (e_value=2e-64) | Symbols: ATTPS21, TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=547;; (*ITAG) Solyc01g101210.2.1 (e_value=3e-135) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00013931g0004.1 protein AED:0.12 eAED:0.12 QI:59|0.66|0.57|1|0.5|0.28|7|596|308; (*GB) gi|225434241|ref|XP_002276129.1| (e_value=6e-96) PREDICTED: uncharacterized protein LOC100245762 [Vitis vinifera];; (*TAIR) AT2G31840.1 (e_value=4e-93) | Symbols: | Thioredoxin superfamily protein | chr2:13538003-13539602 REVERSE LENGTH=350;; (*ITAG) Solyc04g071420.2.1 (e_value=1e-113) genomic_reference:SL2.40ch04 gene_region:55994275-55996502 transcript_region:SL2.40ch04:55994275..55996502+ functional_description:"Thioredoxin family protein (AHRD V1 ***- B6TC88_MAIZE); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00025287g0001.1 protein AED:0.29 eAED:0.29 QI:1402|0.33|0.42|1|0|0|7|195|154 NbS00059868g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|68; (*GB) gi|11465982|ref|NP_054524.1| (e_value=1e-22) ribosomal protein L20 [Nicotiana tabacum];; (*SWP) sp|P06386|RK20_TOBAC (e_value=3e-24) 50S ribosomal protein L20, chloroplastic OS=Nicotiana tabacum GN=rpl20 PE=3 SV=3;; (*ITAG) Solyc01g007470.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1865878-1866264 transcript_region:SL2.40ch01:1865878..1866264- go_terms:GO:0005840 functional_description:"50S ribosomal protein L20 chloroplastic (AHRD V1 ***- Q06R42_9LAMI); contains Interpro domain(s) IPR005813 Ribosomal protein L20 "; GO:0005840 NbS00001725g0005.1 protein AED:0.35 eAED:0.35 QI:263|1|1|1|1|1|3|514|326; (*GB) gi|302141803|emb|CBI19006.3| (e_value=8e-146) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VYX0|ILL6_ARATH (e_value=4e-124) IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2;; (*TAIR) AT1G44350.1 (e_value=3e-125) | Symbols: ILL6 | IAA-leucine resistant (ILR)-like gene 6 | chr1:16834749-16838201 REVERSE LENGTH=464;; (*ITAG) Solyc10g079640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60458342-60468997 transcript_region:SL2.40ch10:60458342..60468997- go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 9 (AHRD V1 ***- B9GU29_POPTR); contains Interpro domain(s) IPR010168 Peptidase M20D, amidohydrolase "; GO:0016787,GO:0008152 NbS00001725g0002.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|269980521|gb|ACZ56435.1| (e_value=7e-47) IAA-amino acid hydrolase [Populus tomentosa];; (*SWP) sp|Q5Z678|ILL6_ORYSJ (e_value=2e-39) IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1;; (*TAIR) AT1G44350.1 (e_value=4e-31) | Symbols: ILL6 | IAA-leucine resistant (ILR)-like gene 6 | chr1:16834749-16838201 REVERSE LENGTH=464;; (*ITAG) Solyc10g079640.1.1 (e_value=1e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60458342-60468997 transcript_region:SL2.40ch10:60458342..60468997- go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 9 (AHRD V1 ***- B9GU29_POPTR); contains Interpro domain(s) IPR010168 Peptidase M20D, amidohydrolase "; GO:0016787,GO:0008152 NbS00001725g0106.1 protein AED:0.25 eAED:0.26 QI:0|0.5|0|0.8|0.5|0.6|5|0|307 NbS00001725g0107.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|84 NbS00051416g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|153; (*ITAG) Solyc05g005320.1.1 (e_value=4e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:250443-250922 transcript_region:SL2.40ch05:250443..250922- functional_description:"Unknown Protein (AHRD V1)"; NbS00051416g0003.1 protein AED:0.08 eAED:0.29 QI:0|0|0|1|0|0.5|2|0|74 NbS00001426g0008.1 protein AED:0.05 eAED:0.05 QI:242|0.9|0.81|1|0.9|0.81|11|588|662; (*GB) gi|255569968|ref|XP_002525947.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-40) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G30300.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr3:11921390-11924254 REVERSE LENGTH=677;; (*ITAG) Solyc03g046470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16871256-16881175 transcript_region:SL2.40ch03:16871256..16881175- functional_description:"Auxin-independent growth promoter protein-like (AHRD V1 **-- Q9LI68_ARATH); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00006974g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|176; (*GB) gi|256274567|gb|ACU68503.1| (e_value=3e-33) WOX3 protein [Petunia x hybrida];; (*SWP) sp|A2XZR3|WOX2_ORYSI (e_value=2e-26) Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica GN=WOX2 PE=3 SV=1;; (*TAIR) AT2G28610.1 (e_value=2e-27) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072770.1.1 (e_value=1e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53058404-53060008 transcript_region:SL2.40ch11:53058404..53060008+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00022020g0008.1 protein AED:0.34 eAED:0.53 QI:0|0|0|1|1|1|2|0|111 NbS00042166g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|461; (*GB) gi|302142030|emb|CBI19233.3| (e_value=3e-175) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SGN7|CCR12_ARATH (e_value=5e-128) Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=2 SV=1;; (*TAIR) AT1G28390.1 (e_value=4e-129) | Symbols: | Protein kinase superfamily protein | chr1:9966814-9968226 REVERSE LENGTH=470;; (*ITAG) Solyc04g075000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58491650-58493140 transcript_region:SL2.40ch04:58491650..58493140- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C6ZRN1_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00032903g0013.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|1|1|3|0|682; (*GB) gi|224115248|ref|XP_002316982.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0.0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1;; (*TAIR) AT3G20580.1 (e_value=0.0) | Symbols: COBL10 | COBRA-like protein 10 precursor | chr3:7188063-7190416 REVERSE LENGTH=672;; (*ITAG) Solyc10g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1056386-1059210 transcript_region:SL2.40ch10:1056386..1059210- functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00032903g0015.1 protein AED:0.24 eAED:0.24 QI:174|1|0.88|1|0.62|0.55|9|0|263; (*GB) gi|359494005|ref|XP_003634707.1| (e_value=3e-54) PREDICTED: DDRGK domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q94C53|DDRGK_ARATH (e_value=3e-49) DDRGK domain-containing protein 1 OS=Arabidopsis thaliana GN=At4g27120 PE=2 SV=1;; (*TAIR) AT4G27120.2 (e_value=2e-50) | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 14775 Blast hits to 8764 proteins in 778 species: Archae - 29; Bacteria - 1878; Metazoa - 5164; Fungi - 1447; Plants - 582; Viruses - 164; Other Eukaryotes - 5511 (source: NCBI BLink). | chr4:13602210-13604227 REVERSE LENGTH=298;; (*ITAG) Solyc10g006460.2.1 (e_value=2e-71) genomic_reference:SL2.40ch10 gene_region:1062715-1066808 transcript_region:SL2.40ch10:1062715..1066808+ functional_description:"DDRGK domain-containing protein 1 (AHRD V1 *-*- DDRGK_ARATH); contains Interpro domain(s) IPR019153 DDRGK domain "; NbS00032903g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.81|0.91|1|0.54|0.5|12|182|413; (*GB) gi|356543936|ref|XP_003540414.1| (e_value=0.0) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=5e-36) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT4G27100.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:13595845-13598620 FORWARD LENGTH=433;; (*ITAG) Solyc10g006440.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1046336-1054965 transcript_region:SL2.40ch10:1046336..1054965+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00035145g0007.1 protein AED:0.28 eAED:0.31 QI:191|0.6|0.5|1|0.6|0.56|16|0|966; (*GB) gi|94958151|gb|ABF47216.1| (e_value=0.0) cathepsin B [Nicotiana benthamiana];; (*SWP) sp|P07858|CATB_HUMAN (e_value=8e-73) Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3;; (*TAIR) AT1G02305.1 (e_value=3e-163) | Symbols: | Cysteine proteinases superfamily protein | chr1:455816-457974 FORWARD LENGTH=362;; (*ITAG) Solyc02g069090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33631872-33638685 transcript_region:SL2.40ch02:33631872..33638685- go_terms:GO:0030984 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B "; GO:0030984 NbS00002486g0107.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|65 NbS00002486g0109.1 protein AED:0.18 eAED:0.27 QI:172|0.66|0.71|1|0.33|0.42|7|653|161 NbS00002486g0112.1 protein AED:0.05 eAED:0.05 QI:724|1|1|1|0|0.2|5|756|272 NbS00057186g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|359; (*GB) gi|225463743|ref|XP_002265646.1| (e_value=1e-121) PREDICTED: SUN domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|Q8BJS4|SUN2_MOUSE (e_value=5e-25) SUN domain-containing protein 2 OS=Mus musculus GN=Sun2 PE=1 SV=3;; (*TAIR) AT5G04990.1 (e_value=4e-116) | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protein 1 | chr5:1471698-1473770 REVERSE LENGTH=471;; (*ITAG) Solyc01g096780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79547731-79553387 transcript_region:SL2.40ch01:79547731..79553387+ go_terms:GO:0005515 functional_description:"Sperm-associated SUN domain protein (AHRD V1 *--- A5HL83_DROME); contains Interpro domain(s) IPR012919 Sad1/UNC-like, C-terminal "; GO:0005515 NbS00009488g0007.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|255537163|ref|XP_002509648.1| (e_value=1e-43) Blue copper protein precursor, putative [Ricinus communis];; (*SWP) sp|P00302|STEL_TOXVR (e_value=1e-26) Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1;; (*TAIR) AT3G17675.1 (e_value=4e-33) | Symbols: | Cupredoxin superfamily protein | chr3:6042244-6042781 REVERSE LENGTH=106;; (*ITAG) Solyc12g056500.1.1 (e_value=6e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:47792805-47793831 transcript_region:SL2.40ch12:47792805..47793831- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- C7AE91_WHEAT); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00009488g0011.1 protein AED:0.12 eAED:0.12 QI:101|1|1|1|0.5|0.61|13|1459|486; (*GB) gi|283837093|emb|CBH19891.1| (e_value=0.0) cell cycle switch 52A [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8L3Z8|FZR2_ARATH (e_value=0.0) Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1;; (*TAIR) AT4G22910.1 (e_value=0.0) | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483;; (*ITAG) Solyc08g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60574341-60578537 transcript_region:SL2.40ch08:60574341..60578537+ go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q9M7I2_MEDTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00009488g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|0|0.25|4|0|253; (*GB) gi|162568912|gb|ABY19382.1| (e_value=2e-141) putative staygreen protein [Nicotiana tabacum];; (*TAIR) AT4G22920.1 (e_value=1e-119) | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268;; (*ITAG) Solyc12g056480.1.1 (e_value=4e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47784400-47786480 transcript_region:SL2.40ch12:47784400..47786480+ functional_description:"Senescence-inducible chloroplast stay-green protein (AHRD V1 **-- A7VLV1_PEA)"; NbS00023427g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|224104275|ref|XP_002313380.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=2e-19) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G24840.1 (e_value=1e-20) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc10g018110.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:6602802-6603356 transcript_region:SL2.40ch10:6602802..6603356+ go_terms:GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** Q2NNC3_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003700 NbS00023427g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|224065545|ref|XP_002301850.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FNC9|TO222_ARATH (e_value=1e-26) Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3;; (*TAIR) AT5G43970.1 (e_value=8e-28) | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase of outer membrane 22-V | chr5:17692888-17693187 FORWARD LENGTH=99;; (*ITAG) Solyc03g005700.1.1 (e_value=6e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:500219-500521 transcript_region:SL2.40ch03:500219..500521- go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM22 (AHRD V1 ***- B6U2X6_MAIZE)"; GO:0015450 NbS00016025g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|0|606; (*GB) gi|225457182|ref|XP_002280557.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9S7Q2|PP124_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1;; (*TAIR) AT1G74850.1 (e_value=0.0) | Symbols: PTAC2 | plastid transcriptionally active 2 | chr1:28119237-28122314 REVERSE LENGTH=862;; (*ITAG) Solyc03g113630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57759710-57764210 transcript_region:SL2.40ch03:57759710..57764210- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016025g0004.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|105; (*ITAG) Solyc05g010360.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016025g0003.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.25|1|1|4|0|161 NbS00038220g0007.1 protein AED:0.05 eAED:0.05 QI:78|0.75|0.6|1|0.25|0.4|5|138|342; (*GB) gi|225431873|ref|XP_002271623.1| (e_value=6e-66) PREDICTED: uncharacterized protein LOC100260115 [Vitis vinifera];; (*TAIR) AT5G49320.1 (e_value=3e-46) | Symbols: | Protein of unknown function (DUF1218) | chr5:19995083-19996214 REVERSE LENGTH=257;; (*ITAG) Solyc01g060450.2.1 (e_value=8e-104) genomic_reference:SL2.40ch01 gene_region:63841510-63843144 transcript_region:SL2.40ch01:63841510..63843144+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00038220g0008.1 protein AED:0.14 eAED:0.14 QI:120|1|1|1|0.75|0.61|13|641|529; (*GB) gi|119866037|gb|ABM05488.1| (e_value=0.0) Impa2 [Nicotiana benthamiana];; (*SWP) sp|Q9SLX0|IMA1B_ORYSJ (e_value=0.0) Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc01g060470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:63867613-63872933 transcript_region:SL2.40ch01:63867613..63872933+ go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00001684g0008.1 protein AED:0.29 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|202; (*GB) gi|350538485|ref|NP_001234345.1| (e_value=1e-47) self-pruning G-box protein [Solanum lycopersicum];; (*SWP) sp|Q84JK2|FD_ARATH (e_value=1e-13) Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1;; (*TAIR) AT4G35900.1 (e_value=8e-15) | Symbols: FD, FD-1, atbzip14 | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:17004746-17005952 FORWARD LENGTH=285;; (*ITAG) Solyc02g083520.2.1 (e_value=2e-50) genomic_reference:SL2.40ch02 gene_region:41465731-41466655 transcript_region:SL2.40ch02:41465731..41466655+ go_terms:GO:0005515,GO:0016563 functional_description:"BZIP transcription factor (AHRD V1 *-** Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0016563 NbS00001684g0011.1 protein AED:0.12 eAED:0.12 QI:556|1|1|1|0.5|0.44|9|249|419; (*GB) gi|334351805|dbj|BAK32933.1| (e_value=0.0) mid1-complementing activity 2 [Nicotiana tabacum];; (*SWP) sp|Q8L7E9|MCAC1_ARATH (e_value=0.0) Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=2 SV=1;; (*TAIR) AT4G35920.2 (e_value=0.0) | Symbols: MCA1 | PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421;; (*ITAG) Solyc02g083540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41475623-41481382 transcript_region:SL2.40ch02:41475623..41481382- functional_description:"Protein kinase domain containing protein (AHRD V1 *--- Q2R001_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00001684g0012.1 protein AED:0.17 eAED:0.19 QI:0|0.22|0.1|0.9|0.66|0.8|10|0|474; (*GB) gi|224058595|ref|XP_002299557.1| (e_value=1e-156) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=2e-145) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.1 (e_value=3e-148) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=472;; (*ITAG) Solyc08g080430.1.1 (e_value=2e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60891782-60894197 transcript_region:SL2.40ch08:60891782..60894197+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00007264g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0.33|1|1|1|3|263|145; (*GB) gi|359483216|ref|XP_002268455.2| (e_value=3e-37) PREDICTED: 7-dehydrocholesterol reductase-like [Vitis vinifera];; (*TAIR) AT1G16810.2 (e_value=5e-34) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:5756150-5756694 FORWARD LENGTH=144;; (*ITAG) Solyc12g099490.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64963131-64965271 transcript_region:SL2.40ch12:64963131..64965271+ functional_description:"FAM32A protein (AHRD V1 *-*- A6QR31_BOVIN); contains Interpro domain(s) IPR013865 Protein of unknown function DUF1754, eukaryotic "; NbS00059595g0006.1 protein AED:0.20 eAED:0.20 QI:71|0.87|0.77|0.88|0.37|0.44|9|302|412; (*GB) gi|224091813|ref|XP_002309357.1| (e_value=6e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57880.1 (e_value=4e-73) | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle 1 | chr5:23443977-23446439 FORWARD LENGTH=385;; (*ITAG) Solyc07g005790.2.1 (e_value=2e-97) genomic_reference:SL2.40ch07 gene_region:642780-645936 transcript_region:SL2.40ch07:642780..645936- functional_description:"Genomic DNA chromosome 5 P1 clone MTI20 (AHRD V1 ***- Q9FJM6_ARATH)"; NbS00012781g0001.1 protein AED:0.19 eAED:0.22 QI:0|0.75|0.58|1|1|1|17|0|797; (*GB) gi|359492219|ref|XP_002280236.2| (e_value=0.0) PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=0.0) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=0.0) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc12g089280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00006735g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|224110988|ref|XP_002315707.1| (e_value=3e-28) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=1e-27) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=1e-28) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc11g011750.1.1 (e_value=4e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4727655-4728155 transcript_region:SL2.40ch11:4727655..4728155+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014162g0011.1 protein AED:0.23 eAED:0.25 QI:39|0.1|0.27|0.90|0.7|0.63|11|255|1195; (*GB) gi|374095601|gb|AEY85028.1| (e_value=0.0) putative ATP-binding protein [Camellia sinensis];; (*SWP) sp|Q09690|POM1_SCHPO (e_value=9e-30) Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pom1 PE=1 SV=1;; (*TAIR) AT1G73460.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27620122-27624899 FORWARD LENGTH=1169;; (*ITAG) Solyc06g072340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40997528-41008872 transcript_region:SL2.40ch06:40997528..41008872- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008152,GO:0006468 NbS00014162g0012.1 protein AED:0.19 eAED:0.19 QI:281|1|1|1|1|1|3|241|109; (*GB) gi|224069344|ref|XP_002326335.1| (e_value=7e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y5T4|DJC15_HUMAN (e_value=3e-26) DnaJ homolog subfamily C member 15 OS=Homo sapiens GN=DNAJC15 PE=1 SV=2;; (*TAIR) AT5G03030.1 (e_value=3e-47) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:708479-709513 REVERSE LENGTH=112;; (*ITAG) Solyc06g072330.2.1 (e_value=1e-59) genomic_reference:SL2.40ch06 gene_region:40995720-40997412 transcript_region:SL2.40ch06:40995720..40997412+ go_terms:GO:0001671 functional_description:"Mitochondrial import inner membrane translocase subunit TIM14 (AHRD V1 ***- B6T323_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0001671 NbS00014162g0018.1 protein AED:0.29 eAED:0.30 QI:541|0.75|0.8|1|0.75|0.6|5|12|123; (*GB) gi|147841226|emb|CAN62416.1| (e_value=2e-33) hypothetical protein VITISV_032220 [Vitis vinifera];; (*TAIR) AT2G39340.1 (e_value=9e-29) | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr2:16424043-16429771 FORWARD LENGTH=1006;; (*ITAG) Solyc05g054910.2.1 (e_value=7e-38) genomic_reference:SL2.40ch05 gene_region:63845774-63861715 transcript_region:SL2.40ch05:63845774..63861715- functional_description:"SAC3/GANP domain-containing protein (AHRD V1 *--- C1HC97_PARBA); contains Interpro domain(s) IPR005062 SAC3/GANP/Nin1/mts3/eIF-3 p25 "; NbS00040154g0002.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.42|1|1|7|0|291; (*ITAG) Solyc01g049970.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:42750080-42753902 transcript_region:SL2.40ch01:42750080..42753902- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00020379g0004.1 protein AED:0.25 eAED:0.27 QI:0|0.5|0|0.8|0.75|0.6|5|0|215; (*GB) gi|255576054|ref|XP_002528922.1| (e_value=2e-84) glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q8VZP6|GUX8_ARATH (e_value=6e-77) Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1;; (*TAIR) AT2G35710.1 (e_value=4e-78) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15010925-15014070 REVERSE LENGTH=497;; (*ITAG) Solyc08g078650.2.1 (e_value=3e-93) genomic_reference:SL2.40ch08 gene_region:59574642-59580780 transcript_region:SL2.40ch08:59574642..59580780- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 glycogenin (AHRD V1 *--- D3TM56_GLOMM); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00020379g0005.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|0|0|3|0|71 NbS00001673g0010.1 protein AED:0.04 eAED:0.07 QI:0|1|0.66|1|1|1|6|0|340; (*GB) gi|37654464|gb|AAP34306.1| (e_value=0.0) copper chaperone precursor [Solanum tuberosum];; (*SWP) sp|Q9WU84|CCS_MOUSE (e_value=1e-44) Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1;; (*TAIR) AT1G12520.1 (e_value=2e-131) | Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267277-4268900 REVERSE LENGTH=320;; (*ITAG) Solyc08g079830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60441494-60444511 transcript_region:SL2.40ch08:60441494..60444511- go_terms:GO:0016532 functional_description:"Cu/Zn-superoxide dismutase copper chaperone (AHRD V1 **** Q9BBU5_SOYBN); contains Interpro domain(s) IPR001424 Superoxide dismutase, copper/zinc binding "; GO:0016532 NbS00001673g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|734; (*GB) gi|3183991|emb|CAA06414.1| (e_value=0.0) P69F protein [Solanum lycopersicum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=2e-169) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=1e-170) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g079850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60454659-60456902 transcript_region:SL2.40ch08:60454659..60456902- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0004252 NbS00001673g0011.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.42|0.71|0.83|0.71|7|0|251; (*GB) gi|110622992|emb|CAJ55406.1| (e_value=9e-116) ADP-sugar diphosphatase [Solanum tuberosum];; (*SWP) sp|Q9SZ63|NUD14_ARATH (e_value=2e-92) Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2;; (*TAIR) AT4G11980.1 (e_value=2e-93) | Symbols: ATNUDT14, ATNUDX14, NUDX14 | nudix hydrolase homolog 14 | chr4:7183845-7185551 REVERSE LENGTH=309;; (*ITAG) Solyc08g079820.2.1 (e_value=7e-119) genomic_reference:SL2.40ch08 gene_region:60437849-60441440 transcript_region:SL2.40ch08:60437849..60441440+ go_terms:GO:0080042,GO:0080041 functional_description:"ADP-ribose pyrophosphatase (AHRD V1 *-** B2GB88_LACF3); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0080042,GO:0080041 NbS00033539g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|0.66|0.75|4|237|349; (*GB) gi|297735540|emb|CBI18034.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g052210.2.1 (e_value=6e-97) genomic_reference:SL2.40ch05 gene_region:61637100-61640159 transcript_region:SL2.40ch05:61637100..61640159- functional_description:"Unknown Protein (AHRD V1)"; NbS00033539g0004.1 protein AED:0.37 eAED:0.41 QI:291|0|0.25|0.5|0|0|4|110|55 NbS00002769g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|225448055|ref|XP_002275577.1| (e_value=2e-70) PREDICTED: putative elongation of fatty acids protein DDB_G0272012-like [Vitis vinifera];; (*SWP) sp|P39540|ELO1_YEAST (e_value=4e-16) Elongation of fatty acids protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELO1 PE=1 SV=1;; (*TAIR) AT3G06470.1 (e_value=4e-70) | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278;; (*ITAG) Solyc07g018240.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:9832155-9832976 transcript_region:SL2.40ch07:9832155..9832976- go_terms:GO:0009922,GO:0005515 functional_description:"Elongation of very long chain fatty acids protein 4 (AHRD V1 *-** B0W9Y0_CULQU); contains Interpro domain(s) IPR002076 GNS1/SUR4 membrane protein "; GO:0009922,GO:0005515 NbS00040636g0001.1 protein AED:0.49 eAED:0.49 QI:186|0.33|0.5|0.5|0.66|0.5|4|280|118 NbS00033072g0003.1 protein AED:0.30 eAED:0.39 QI:336|0|0.33|0.66|1|1|3|0|79 NbS00013571g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|4105812|gb|AAD02562.1| (e_value=1e-32) PGPS/NH22 [Petunia x hybrida]; NbS00044989g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0|0.75|1|0.75|4|0|115; (*GB) gi|585451|sp|P37221.1|MAOM_SOLTU (e_value=3e-46) RecName: Full=NAD-dependent malic enzyme 62 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor;; (*SWP) sp|P37221|MAOM_SOLTU (e_value=1e-47) NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT2G13560.1 (e_value=3e-45) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623;; (*ITAG) Solyc08g013860.2.1 (e_value=7e-49) genomic_reference:SL2.40ch08 gene_region:3198664-3222236 transcript_region:SL2.40ch08:3198664..3222236- go_terms:GO:0005524,GO:0008270,GO:0050897 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0005524,GO:0008270,GO:0050897 NbS00044989g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.2|1|1|5|0|160; (*GB) gi|255571113|ref|XP_002526507.1| (e_value=8e-57) malic enzyme, putative [Ricinus communis];; (*SWP) sp|P37224|MAOM_AMAHP (e_value=2e-55) NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1;; (*TAIR) AT2G13560.1 (e_value=3e-57) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623;; (*ITAG) Solyc08g013860.2.1 (e_value=2e-60) genomic_reference:SL2.40ch08 gene_region:3198664-3222236 transcript_region:SL2.40ch08:3198664..3222236- go_terms:GO:0005524,GO:0008270,GO:0050897 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0005524,GO:0008270,GO:0050897 NbS00016343g0003.1 protein AED:0.00 eAED:0.00 QI:23|1|1|1|1|1|2|276|97; (*GB) gi|121648|sp|P23137.1|GRP1_TOBAC (e_value=1e-32) RecName: Full=Glycine-rich protein; Flags: Precursor;; (*SWP) sp|P23137|GRP1_TOBAC (e_value=3e-34) Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1;; (*ITAG) Solyc09g097770.2.1 (e_value=6e-15) genomic_reference:SL2.40ch09 gene_region:67062889-67064180 transcript_region:SL2.40ch09:67062889..67064180+ functional_description:"Cell wall protein (AHRD V1 ***- Q40142_SOLLC); contains Interpro domain(s) IPR010800 Glycine rich "; NbS00021377g0017.1 protein AED:0.12 eAED:0.12 QI:60|1|0.92|1|0.66|0.69|13|0|608; (*GB) gi|225463870|ref|XP_002268712.1| (e_value=0.0) PREDICTED: GPI transamidase component PIG-S-like [Vitis vinifera];; (*SWP) sp|Q96S52|PIGS_HUMAN (e_value=1e-38) GPI transamidase component PIG-S OS=Homo sapiens GN=PIGS PE=1 SV=3;; (*TAIR) AT3G07180.1 (e_value=0.0) | Symbols: | GPI transamidase component PIG-S-related | chr3:2282455-2285475 REVERSE LENGTH=599;; (*ITAG) Solyc09g059600.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50495345-50506153 transcript_region:SL2.40ch09:50495345..50506153+ functional_description:"GPI transamidase component PIG-S-like (AHRD V1 *-*- Q5N713_ORYSJ); contains Interpro domain(s) IPR019540 Phosphatidylinositol-glycan biosynthesis class S protein "; NbS00021377g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|0.5|0.66|3|0|245; (*GB) gi|224129502|ref|XP_002320602.1| (e_value=9e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48660.1 (e_value=3e-63) | Symbols: | B-cell receptor-associated protein 31-like | chr5:19736986-19738327 FORWARD LENGTH=219;; (*ITAG) Solyc09g059570.2.1 (e_value=8e-103) genomic_reference:SL2.40ch09 gene_region:50463633-50466385 transcript_region:SL2.40ch09:50463633..50466385+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6U1I6_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00021377g0004.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|723; (*GB) gi|359495515|ref|XP_002265720.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LJR6|PP253_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1;; (*TAIR) AT3G25060.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9128516-9130321 FORWARD LENGTH=601;; (*ITAG) Solyc09g059580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:50466459-50470194 transcript_region:SL2.40ch09:50466459..50470194- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00021377g0018.1 protein AED:0.36 eAED:0.36 QI:278|0.75|0.8|1|0.75|0.8|5|0|189; (*GB) gi|225463868|ref|XP_002267796.1| (e_value=6e-80) PREDICTED: uncharacterized protein LOC100246803 [Vitis vinifera];; (*TAIR) AT3G07170.1 (e_value=2e-50) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2280428-2282097 FORWARD LENGTH=203;; (*ITAG) Solyc09g059620.2.1 (e_value=4e-118) genomic_reference:SL2.40ch09 gene_region:50519658-50529728 transcript_region:SL2.40ch09:50519658..50529728- go_terms:GO:0016757 functional_description:"SAM domain family protein (AHRD V1 **-- B6TMA1_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0016757 NbS00030986g0002.1 protein AED:0.12 eAED:0.12 QI:875|1|0.66|1|0|0|3|588|318; (*GB) gi|225454755|ref|XP_002273949.1| (e_value=1e-67) PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera];; (*SWP) sp|Q84T61|HSFA1_ORYSJ (e_value=2e-45) Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1;; (*TAIR) AT5G16820.2 (e_value=5e-31) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc03g097120.2.1 (e_value=6e-122) genomic_reference:SL2.40ch03 gene_region:52901766-52904929 transcript_region:SL2.40ch03:52901766..52904929- go_terms:GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00030986g0015.1 protein AED:0.23 eAED:0.24 QI:0|1|0.88|1|0.75|0.77|9|858|157; (*GB) gi|30686026|ref|NP_197183.2| (e_value=4e-20) protein kinase family protein [Arabidopsis thaliana];; (*TAIR) AT5G16810.1 (e_value=9e-23) | Symbols: | Protein kinase superfamily protein | chr5:5526860-5529878 REVERSE LENGTH=418;; (*ITAG) Solyc03g097130.2.1 (e_value=2e-43) genomic_reference:SL2.40ch03 gene_region:52909981-52914569 transcript_region:SL2.40ch03:52909981..52914569+ go_terms:GO:0006468 functional_description:"ATP binding protein (AHRD V1 ***- D7M885_ARALY); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00037255g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|438; (*GB) gi|255543963|ref|XP_002513044.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=1e-44) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT5G07030.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:2183600-2185717 REVERSE LENGTH=455;; (*ITAG) Solyc01g096450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79304614-79307810 transcript_region:SL2.40ch01:79304614..79307810+ go_terms:GO:0006508,GO:0031177 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TDX6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508,GO:0031177 NbS00009413g0005.1 protein AED:0.13 eAED:0.22 QI:0|0.75|0.6|1|1|1|5|339|253; (*GB) gi|225425998|ref|XP_002270849.1| (e_value=8e-86) PREDICTED: uncharacterized protein KIAA1310 homolog [Vitis vinifera];; (*SWP) sp|Q499B3|KANL3_DANRE (e_value=2e-12) KAT8 regulatory NSL complex subunit 3 OS=Danio rerio GN=kansl3 PE=2 SV=1;; (*TAIR) AT5G41850.1 (e_value=3e-83) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:16756698-16757791 REVERSE LENGTH=224;; (*ITAG) Solyc08g082150.1.1 (e_value=4e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62184696-62185922 transcript_region:SL2.40ch08:62184696..62185922- functional_description:"Alpha/beta hydrolase (AHRD V1 ***- D0M6M2_VIBSE)"; NbS00009413g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|1|1|1|2|364|164; (*GB) gi|3228262|emb|CAA12355.1| (e_value=4e-47) hypothetical protein [Solanum tuberosum];; (*ITAG) Solyc08g082120.2.1 (e_value=2e-43) genomic_reference:SL2.40ch08 gene_region:62171934-62173538 transcript_region:SL2.40ch08:62171934..62173538+ functional_description:"Methanol inducible protein (AHRD V1 ***- D1MAX5_NICBE)"; NbS00000004g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|225440344|ref|XP_002270135.1| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100247771 [Vitis vinifera];; (*TAIR) AT3G09430.1 (e_value=4e-11) | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2901280-2902893 FORWARD LENGTH=301;; (*ITAG) Solyc09g010710.2.1 (e_value=1e-60) genomic_reference:SL2.40ch09 gene_region:4026081-4029219 transcript_region:SL2.40ch09:4026081..4029219- functional_description:"Unknown Protein (AHRD V1)"; NbS00031087g0007.1 protein AED:0.01 eAED:0.01 QI:122|1|1|1|1|1|2|297|360; (*GB) gi|147858660|emb|CAN80430.1| (e_value=0.0) hypothetical protein VITISV_013812 [Vitis vinifera];; (*SWP) sp|Q9SZ83|Y4967_ARATH (e_value=5e-173) Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1;; (*TAIR) AT4G09670.1 (e_value=4e-174) | Symbols: | Oxidoreductase family protein | chr4:6107382-6109049 REVERSE LENGTH=362;; (*ITAG) Solyc12g056800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48236269-48238946 transcript_region:SL2.40ch12:48236269..48238946+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7LXC3_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491,GO:0055114 NbS00031087g0006.1 protein AED:0.14 eAED:0.36 QI:24|0|0.5|1|0|0|2|173|44 NbS00031087g0008.1 protein AED:0.09 eAED:0.44 QI:91|0|0.5|1|0|0.5|2|6|46 NbS00016694g0001.1 protein AED:0.42 eAED:0.67 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc11g005270.1.1 (e_value=9e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:223453-224025 transcript_region:SL2.40ch11:223453..224025+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7M5W6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00023273g0013.1 protein AED:0.14 eAED:0.14 QI:252|1|0.83|1|0.6|0.66|6|442|632; (*GB) gi|297742250|emb|CBI34399.3| (e_value=7e-99) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G64050.2 (e_value=2e-53) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr1:23762584-23765714 FORWARD LENGTH=666;; (*ITAG) Solyc12g056170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47483636-47492298 transcript_region:SL2.40ch12:47483636..47492298- functional_description:"Unknown Protein (AHRD V1)"; NbS00000286g0017.1 protein AED:0.08 eAED:0.08 QI:0|1|0.71|1|1|0.71|7|0|572; (*GB) gi|357120438|ref|XP_003561934.1| (e_value=2e-178) PREDICTED: endo-1,4-beta-xylanase A-like [Brachypodium distachyon];; (*SWP) sp|Q60037|XYNA_THEMA (e_value=4e-23) Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=xynA PE=1 SV=1;; (*TAIR) AT4G33840.1 (e_value=4e-172) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g105500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85412653-85415396 transcript_region:SL2.40ch01:85412653..85415396+ go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00000286g0016.1 protein AED:0.15 eAED:0.15 QI:251|1|1|1|0.72|0.66|12|494|397; (*GB) gi|224141217|ref|XP_002323971.1| (e_value=1e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WUA3|MENA_ARATH (e_value=3e-127) 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2;; (*TAIR) AT1G60600.2 (e_value=2e-128) | Symbols: ABC4 | UbiA prenyltransferase family protein | chr1:22324807-22326759 REVERSE LENGTH=382;; (*ITAG) Solyc01g105460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85388619-85395868 transcript_region:SL2.40ch01:85388619..85395868+ go_terms:GO:0046428 functional_description:"1 4-dihydroxy-2-naphthoate octaprenyltransferase (AHRD V1 **** B6UA12_MAIZE); contains Interpro domain(s) IPR011937 1,4-dihydroxy-2-naphthoate phytyltransferase "; GO:0046428 NbS00000286g0018.1 protein AED:0.18 eAED:0.19 QI:0|0.4|0.33|1|0.2|0.66|6|0|513; (*GB) gi|378747581|gb|AFC36404.1| (e_value=0.0) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=1e-133) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=1e-134) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000286g0011.1 protein AED:0.65 eAED:0.88 QI:0|0|0|0.33|1|1|3|0|89 NbS00017358g0012.1 protein AED:0.07 eAED:0.07 QI:773|1|1|1|0.75|0.8|5|269|128; (*GB) gi|62526573|gb|AAX84672.1| (e_value=7e-61) aldo/keto reductase AKR [Manihot esculenta];; (*SWP) sp|A2XRZ0|AKR2_ORYSI (e_value=2e-60) Probable aldo-keto reductase 2 OS=Oryza sativa subsp. indica GN=OsI_15387 PE=3 SV=1;; (*TAIR) AT1G60710.1 (e_value=2e-59) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097980.2.1 (e_value=1e-80) genomic_reference:SL2.40ch09 gene_region:67196720-67200070 transcript_region:SL2.40ch09:67196720..67200070+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00017358g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|3|0|664; (*GB) gi|15418710|gb|AAG31014.1| (e_value=0.0) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-81) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=9e-32) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc09g098130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00017358g0011.1 protein AED:0.22 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|111; (*GB) gi|224131502|ref|XP_002321100.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91VC0|DCTP1_RAT (e_value=9e-15) dCTP pyrophosphatase 1 OS=Rattus norvegicus GN=Dctpp1 PE=2 SV=1;; (*TAIR) AT3G25400.1 (e_value=1e-28) | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141;; (*ITAG) Solyc09g097930.2.1 (e_value=1e-34) genomic_reference:SL2.40ch09 gene_region:67180180-67182477 transcript_region:SL2.40ch09:67180180..67182477- go_terms:GO:0000287,GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- B1J275_PSEPW); contains Interpro domain(s) IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core "; GO:0000287,GO:0047429 NbS00017358g0007.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|65; (*GB) gi|297178|emb|CAA37333.1| (e_value=4e-20) alcohol dehydrogenase [Solanum tuberosum];; (*SWP) sp|P14675|ADH3_SOLTU (e_value=1e-21) Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1;; (*TAIR) AT1G77120.1 (e_value=9e-19) | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379;; (*ITAG) Solyc06g059740.2.1 (e_value=3e-23) genomic_reference:SL2.40ch06 gene_region:33996647-33998846 transcript_region:SL2.40ch06:33996647..33998846+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** Q84UY3_PETHY); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00017358g0002.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|225456571|ref|XP_002265430.1| (e_value=9e-14) PREDICTED: uncharacterized protein LOC100256963 [Vitis vinifera];; (*ITAG) Solyc09g097920.1.1 (e_value=5e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017358g0013.1 protein AED:0.41 eAED:0.80 QI:0|0|0|1|0|0|2|0|67; (*GB) gi|224142903|ref|XP_002324772.1| (e_value=3e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74120.1 (e_value=2e-15) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:27871923-27873260 REVERSE LENGTH=445;; (*ITAG) Solyc09g097920.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67175866-67177251 transcript_region:SL2.40ch09:67175866..67177251- functional_description:"Mitochondrial transcription termination factor-like family-1 (AHRD V1 **-- B9V0G4_9ORYZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00017358g0016.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|0|0|2|0|61; (*ITAG) Solyc09g097930.2.1 (e_value=4e-19) genomic_reference:SL2.40ch09 gene_region:67180180-67182477 transcript_region:SL2.40ch09:67180180..67182477- go_terms:GO:0000287,GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- B1J275_PSEPW); contains Interpro domain(s) IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core "; GO:0000287,GO:0047429 NbS00060633g0009.1 protein AED:0.25 eAED:0.25 QI:80|0.75|0.6|1|1|1|5|0|366; (*GB) gi|255549824|ref|XP_002515963.1| (e_value=1e-95) DNA repair/transcription protein met18/mms19, putative [Ricinus communis];; (*TAIR) AT5G48120.1 (e_value=1e-68) | Symbols: | ARM repeat superfamily protein | chr5:19508210-19514774 REVERSE LENGTH=1134;; (*ITAG) Solyc03g121030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63310422-63322664 transcript_region:SL2.40ch03:63310422..63322664- go_terms:GO:0005737,GO:0005488 functional_description:"DNA repair/transcription protein Mms19-like protein (AHRD V1 *-*- Q6ZEY8_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005737,GO:0005488 NbS00060633g0007.1 protein AED:0.34 eAED:0.34 QI:37|0.33|0.25|1|0.33|0.5|4|0|121; (*ITAG) Solyc03g121030.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63310422-63322664 transcript_region:SL2.40ch03:63310422..63322664- go_terms:GO:0005737,GO:0005488 functional_description:"DNA repair/transcription protein Mms19-like protein (AHRD V1 *-*- Q6ZEY8_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005737,GO:0005488 NbS00060633g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|0.81|1|1|1|11|316|685; (*GB) gi|356522920|ref|XP_003530090.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800148 [Glycine max];; (*SWP) sp|Q8N7H5|PAF1_HUMAN (e_value=2e-23) RNA polymerase II-associated factor 1 homolog OS=Homo sapiens GN=PAF1 PE=1 SV=2;; (*TAIR) AT1G79730.1 (e_value=0.0) | Symbols: ELF7 | hydroxyproline-rich glycoprotein family protein | chr1:30000743-30003969 REVERSE LENGTH=589;; (*ITAG) Solyc03g121020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63301902-63309065 transcript_region:SL2.40ch03:63301902..63309065+ functional_description:"RNA polymerase II-associated factor 1 homolog (AHRD V1 *-*- C0HAQ1_SALSA); contains Interpro domain(s) IPR007133 RNA polymerase II-associated, Paf1 "; NbS00026037g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|77; (*ITAG) Solyc11g007100.1.1 (e_value=9e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1565412-1565645 transcript_region:SL2.40ch11:1565412..1565645- functional_description:"Unknown Protein (AHRD V1)"; NbS00026037g0015.1 protein AED:0.36 eAED:0.39 QI:0|0.4|0.5|1|0.6|0.5|6|10|470; (*GB) gi|296087968|emb|CBI35251.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G56680.1 (e_value=2e-48) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353;; (*ITAG) Solyc11g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1568263-1573828 transcript_region:SL2.40ch11:1568263..1573828- go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW9_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00026037g0009.1 protein AED:0.11 eAED:0.11 QI:163|0.5|0.33|1|0|0.33|3|153|60 NbS00026037g0013.1 protein AED:0.28 eAED:0.29 QI:0|0.87|0.55|0.88|0.62|0.66|9|0|469; (*GB) gi|225464136|ref|XP_002266672.1| (e_value=0.0) PREDICTED: aspartyl aminopeptidase [Vitis vinifera];; (*SWP) sp|B9RAJ0|DNPEP_RICCO (e_value=0.0) Probable aspartyl aminopeptidase OS=Ricinus communis GN=RCOM_1506700 PE=2 SV=2;; (*TAIR) AT5G04710.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:1357273-1360128 REVERSE LENGTH=526;; (*ITAG) Solyc11g007090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1557511-1565120 transcript_region:SL2.40ch11:1557511..1565120+ go_terms:GO:0005773 functional_description:"Aspartyl aminopeptidase (AHRD V1 ***- Q9LZ26_ARATH); contains Interpro domain(s) IPR001948 Peptidase M18, aminopeptidase I "; GO:0005773 NbS00026037g0014.1 protein AED:0.20 eAED:0.78 QI:0|0|0|1|0|0|2|0|85 NbS00035451g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0.5|0.5|1|1|2|649|99; (*GB) gi|113205241|gb|AAT39313.2| (e_value=2e-39) POT family protein [Solanum demissum];; (*SWP) sp|Q9M1E2|PTR37_ARATH (e_value=5e-32) Nitrate excretion transporter 1 OS=Arabidopsis thaliana GN=NAXT1 PE=1 SV=1;; (*TAIR) AT3G45650.1 (e_value=4e-33) | Symbols: NAXT1 | nitrate excretion transporter1 | chr3:16759253-16761266 FORWARD LENGTH=558;; (*ITAG) Solyc06g075480.2.1 (e_value=7e-50) genomic_reference:SL2.40ch06 gene_region:43228038-43231236 transcript_region:SL2.40ch06:43228038..43231236- go_terms:GO:0080054,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00039997g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|0.5|2|0|465; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=0.0) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*SWP) sp|P52409|E13B_WHEAT (e_value=8e-126) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT3G55430.1 (e_value=2e-156) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449;; (*ITAG) Solyc07g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:261349-264657 transcript_region:SL2.40ch07:261349..264657- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00039997g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.4|0.33|6|311|170; (*GB) gi|225454745|ref|XP_002273656.1| (e_value=7e-82) PREDICTED: DNA replication complex GINS protein PSF2 [Vitis vinifera];; (*SWP) sp|Q9C7A8|PSF2_ARATH (e_value=1e-68) DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana GN=GINS2 PE=2 SV=2;; (*TAIR) AT3G12530.2 (e_value=6e-70) | Symbols: PSF2 | PSF2 | chr3:3972604-3973728 REVERSE LENGTH=191;; (*ITAG) Solyc05g054430.2.1 (e_value=1e-122) genomic_reference:SL2.40ch05 gene_region:63509079-63513645 transcript_region:SL2.40ch05:63509079..63513645+ go_terms:GO:0005515 functional_description:"DNA replication complex GINS protein PSF2 (AHRD V1 ***- B4FLH9_MAIZE); contains Interpro domain(s) IPR016906 GINS complex, PSF2 component, subgroup "; GO:0005515 NbS00010466g0003.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|427; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=2e-165) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=6e-142) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=4e-51) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc11g066670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49527008-49528411 transcript_region:SL2.40ch11:49527008..49528411+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 *-*- B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00010466g0004.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|72; (*ITAG) Solyc11g066680.1.1 (e_value=5e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49531533-49532927 transcript_region:SL2.40ch11:49531533..49532927+ go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *--- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001845g0008.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.66|0.5|0.33|3|0|91; (*GB) gi|356570608|ref|XP_003553477.1| (e_value=8e-29) PREDICTED: histone acetyltransferase GCN5-like [Glycine max];; (*SWP) sp|Q9AR19|GCN5_ARATH (e_value=3e-27) Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1;; (*TAIR) AT3G54610.1 (e_value=2e-28) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045390.1.1 (e_value=2e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:28718409-28718607 transcript_region:SL2.40ch10:28718409..28718607- functional_description:"Histone acetyltransferase GCN5 (AHRD V1 ***- GCN5_ARATH); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00001845g0007.1 protein AED:0.04 eAED:0.04 QI:336|1|1|1|1|1|9|159|517; (*GB) gi|57920902|gb|AAS90324.2| (e_value=0.0) 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=1e-161) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=8e-163) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc10g038080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:19375389-19384293 transcript_region:SL2.40ch10:19375389..19384293- go_terms:GO:0008152,GO:0005737,GO:0003855 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I "; GO:0008152,GO:0005737,GO:0003855 NbS00033400g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|85; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=4e-30) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=1e-25) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=3e-30) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00039152g0005.1 protein AED:0.24 eAED:0.24 QI:868|0.84|0.64|1|0.92|0.85|14|0|927; (*GB) gi|297734308|emb|CBI15555.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=6e-101) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G11850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:3816632-3821024 REVERSE LENGTH=880;; (*ITAG) Solyc06g068980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39180022-39189671 transcript_region:SL2.40ch06:39180022..39189671- go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712,GO:0004709 NbS00034870g0005.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0|0|4|0|543; (*GB) gi|297306778|dbj|BAJ08391.1| (e_value=0.0) fucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9FX97|FUT12_ARATH (e_value=0.0) Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1;; (*TAIR) AT1G49710.1 (e_value=0.0) | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase 12 | chr1:18391622-18393769 REVERSE LENGTH=513;; (*ITAG) Solyc01g108110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00035368g0003.1 protein AED:0.37 eAED:0.37 QI:0|0.33|0.25|1|0.33|0.5|4|0|181; (*GB) gi|359484712|ref|XP_002264681.2| (e_value=5e-17) PREDICTED: serine/threonine-protein kinase BRI1-like 1-like [Vitis vinifera];; (*ITAG) Solyc08g016270.1.1 (e_value=8e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:7042139-7046369 transcript_region:SL2.40ch08:7042139..7046369- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00030923g0006.1 protein AED:0.33 eAED:0.36 QI:162|0.66|0.75|1|0.66|0.75|4|0|108; (*GB) gi|225461330|ref|XP_002284579.1| (e_value=6e-32) PREDICTED: uncharacterized protein LOC100252136 [Vitis vinifera];; (*TAIR) AT2G20820.1 (e_value=3e-23) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8964450-8965166 FORWARD LENGTH=93;; (*ITAG) Solyc07g063540.2.1 (e_value=1e-46) genomic_reference:SL2.40ch07 gene_region:63218222-63221060 transcript_region:SL2.40ch07:63218222..63221060- functional_description:"Unknown Protein (AHRD V1)"; NbS00030923g0001.1 protein AED:0.34 eAED:0.34 QI:294|1|1|1|1|1|6|181|253; (*GB) gi|255586088|ref|XP_002533708.1| (e_value=8e-88) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27390.1 (e_value=2e-74) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13703417-13704655 REVERSE LENGTH=235;; (*ITAG) Solyc07g063530.2.1 (e_value=5e-126) genomic_reference:SL2.40ch07 gene_region:63212972-63217701 transcript_region:SL2.40ch07:63212972..63217701+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027178g0007.1 protein AED:0.08 eAED:0.08 QI:69|0.5|0.66|1|0|0|3|743|597; (*GB) gi|225447243|ref|XP_002272819.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g03540-like [Vitis vinifera];; (*SWP) sp|Q9LR69|PPR8_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1;; (*TAIR) AT1G03540.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:883782-885611 FORWARD LENGTH=609;; (*ITAG) Solyc10g008570.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2680073-2683654 transcript_region:SL2.40ch10:2680073..2683654- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCG0_ARALY); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0004519 NbS00027178g0012.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0.5|0.33|3|0|283; (*GB) gi|359496726|ref|XP_003635313.1| (e_value=2e-132) PREDICTED: syntaxin-124-like [Vitis vinifera];; (*SWP) sp|O64791|SY124_ARATH (e_value=2e-124) Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1;; (*TAIR) AT1G61290.1 (e_value=2e-125) | Symbols: SYP124, ATSYP124 | syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303;; (*ITAG) Solyc12g005580.1.1 (e_value=1e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:311206-312223 transcript_region:SL2.40ch12:311206..312223- go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00034079g0001.1 protein AED:0.10 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|255585980|ref|XP_002533660.1| (e_value=6e-12) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g007520.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1777779-1778240 transcript_region:SL2.40ch11:1777779..1778240+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017403g0022.1 protein AED:0.11 eAED:0.12 QI:199|0.89|0.86|1|0.75|0.76|30|0|2197; (*GB) gi|296086497|emb|CBI32086.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G05680.1 (e_value=0.0) | Symbols: EMB2016 | embryo defective 2016 | chr3:1660802-1672015 REVERSE LENGTH=2138;; (*ITAG) Solyc03g020020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbS00017403g0003.1 protein AED:0.24 eAED:0.24 QI:494|0.91|0.92|1|0.83|0.76|13|551|418; (*GB) gi|359489921|ref|XP_002264045.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266486 [Vitis vinifera];; (*TAIR) AT1G73390.3 (e_value=0.0) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:27591079-27594148 REVERSE LENGTH=419;; (*ITAG) Solyc03g019950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6818991-6825581 transcript_region:SL2.40ch03:6818991..6825581- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 **-- Q9FFX3_ARATH); contains Interpro domain(s) IPR004328 BRO1 "; NbS00017403g0024.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.33|3|0|227; (*GB) gi|301131144|gb|ADK62529.1| (e_value=2e-141) miraculin-like protein [Nicotiana benthamiana];; (*SWP) sp|P13087|MIRA_RICDU (e_value=3e-60) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=2e-71) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g020010.1.1 (e_value=2e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6869908-6870525 transcript_region:SL2.40ch03:6869908..6870525+ go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type trypsin inhibitor alpha chain (AHRD V1 **** ID5A_PROJU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00017403g0020.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.75|0.87|0.85|0.75|8|0|1050; (*GB) gi|225470997|ref|XP_002266598.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=1e-100) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=1e-101) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc03g020000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6864937-6868802 transcript_region:SL2.40ch03:6864937..6868802+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017403g0021.1 protein AED:0.22 eAED:0.22 QI:0|0.86|0.93|1|0.73|0.87|16|224|618; (*GB) gi|359495974|ref|XP_003635124.1| (e_value=0.0) PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera];; (*SWP) sp|O48593|SYNO_ARATH (e_value=0.0) Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3;; (*TAIR) AT4G17300.1 (e_value=0.0) | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:9681558-9684833 FORWARD LENGTH=567;; (*ITAG) Solyc03g019940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6810545-6817858 transcript_region:SL2.40ch03:6810545..6817858+ go_terms:GO:0042802,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** D6YS69_WADCW); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb "; GO:0042802,GO:0004816 NbS00032670g0021.1 protein AED:0.08 eAED:0.08 QI:533|0.5|0.33|1|0.5|0.66|3|85|230; (*GB) gi|1709692|sp|P54153.1|MSRA_SOLLC (e_value=3e-116) RecName: Full=Peptide methionine sulfoxide reductase; AltName: Full=Fruit-ripening protein E4; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase; AltName: Full=Protein-methionine-S-oxide reductase;; (*SWP) sp|P54153|MSRA_SOLLC (e_value=8e-118) Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1;; (*TAIR) AT5G61640.1 (e_value=1e-89) | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide reductase 1 | chr5:24775107-24776147 FORWARD LENGTH=202;; (*ITAG) Solyc03g111720.2.1 (e_value=5e-119) genomic_reference:SL2.40ch03 gene_region:56431489-56432545 transcript_region:SL2.40ch03:56431489..56432545+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D7E9W5_METEZ); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00032670g0020.1 protein AED:0.20 eAED:0.20 QI:155|1|0.8|1|0.75|0.8|5|277|411; (*GB) gi|255540423|ref|XP_002511276.1| (e_value=9e-149) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FMK7|BT1_ARATH (e_value=4e-112) BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1;; (*TAIR) AT5G63160.1 (e_value=3e-113) | Symbols: BT1 | BTB and TAZ domain protein 1 | chr5:25333485-25335399 REVERSE LENGTH=365;; (*ITAG) Solyc03g111710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56425055-56427682 transcript_region:SL2.40ch03:56425055..56427682+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- SPOP_XENTR); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00032670g0016.1 protein AED:0.03 eAED:0.03 QI:345|1|1|1|1|1|4|175|361; (*GB) gi|172052260|gb|ACB70409.1| (e_value=0.0) cysteine protease [Nicotiana tabacum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=0.0) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=7e-173) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00032670g0018.1 protein AED:0.13 eAED:0.13 QI:6|0.95|0.86|1|0.76|0.81|22|161|930; (*GB) gi|225436053|ref|XP_002275928.1| (e_value=0.0) PREDICTED: protein argonaute 4 [Vitis vinifera];; (*SWP) sp|Q0JF58|AGO4B_ORYSJ (e_value=0.0) Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1;; (*TAIR) AT2G27040.2 (e_value=0.0) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc03g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56447055-56453018 transcript_region:SL2.40ch03:56447055..56453018- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00032670g0019.1 protein AED:0.18 eAED:0.19 QI:321|1|0.8|1|0.75|1|5|0|370; (*GB) gi|255540431|ref|XP_002511280.1| (e_value=0.0) Protein bem46, putative [Ricinus communis];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=3e-70) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT4G24760.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12761482-12763564 REVERSE LENGTH=365;; (*ITAG) Solyc03g111770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56452663-56457279 transcript_region:SL2.40ch03:56452663..56457279- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00032670g0023.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|0.83|0.8|0.66|6|0|503; (*GB) gi|224133752|ref|XP_002321652.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O15736|TIPD_DICDI (e_value=3e-73) Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1;; (*TAIR) AT5G50230.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20448632-20450855 REVERSE LENGTH=509;; (*ITAG) Solyc03g111740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56438480-56443877 transcript_region:SL2.40ch03:56438480..56443877- go_terms:GO:0005515 functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AXY5_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00061423g0001.1 protein AED:0.16 eAED:0.16 QI:60|0|0.5|1|0|0.5|2|0|180; (*GB) gi|297737162|emb|CBI26363.3| (e_value=4e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46279|RPB7_SOYBN (e_value=7e-21) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G14660.1 (e_value=5e-95) | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178;; (*ITAG) Solyc03g118380.1.1 (e_value=3e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:61325558-61326031 transcript_region:SL2.40ch03:61325558..61326031- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003899 NbS00008160g0002.1 protein AED:0.29 eAED:0.29 QI:101|1|0.85|1|0.33|0.42|7|290|157; (*GB) gi|225433132|ref|XP_002285184.1| (e_value=4e-67) PREDICTED: chromatin modification-related protein eaf6 [Vitis vinifera];; (*SWP) sp|Q68ER9|EAF6_XENTR (e_value=2e-16) Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1;; (*TAIR) AT4G14385.1 (e_value=2e-47) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8287144-8288622 REVERSE LENGTH=163;; (*ITAG) Solyc09g090120.2.1 (e_value=8e-93) genomic_reference:SL2.40ch09 gene_region:65001524-65006370 transcript_region:SL2.40ch09:65001524..65006370+ functional_description:"Chromatin modification-related protein MEAF6 (AHRD V1 ***- EAF6_CHICK); contains Interpro domain(s) IPR015418 Histone H4 acetyltransferase, NuA4 complex, Eaf6 "; NbS00044642g0006.1 protein AED:0.04 eAED:0.04 QI:374|1|1|1|0.69|0.71|14|444|639; (*GB) gi|225424633|ref|XP_002282325.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245809 [Vitis vinifera];; (*SWP) sp|A7XZT2|AGALB_TALEM (e_value=3e-11) Probable alpha-galactosidase B OS=Talaromyces emersonii PE=3 SV=1;; (*TAIR) AT3G26380.1 (e_value=0.0) | Symbols: | Melibiase family protein | chr3:9660140-9663145 FORWARD LENGTH=647;; (*ITAG) Solyc05g013720.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7017520-7023848 transcript_region:SL2.40ch05:7017520..7023848- go_terms:GO:0008152,GO:0005975 functional_description:"Alpha-galactosidase (AHRD V1 *-*- D4LCA1_9FIRM); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0008152,GO:0005975 NbS00044642g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|297838529|ref|XP_002887146.1| (e_value=6e-65) Fe-S metabolism associated domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=6e-14) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT1G67810.1 (e_value=1e-66) | Symbols: SUFE2 | sulfur E2 | chr1:25426488-25427264 FORWARD LENGTH=258;; (*ITAG) Solyc05g013710.2.1 (e_value=2e-105) genomic_reference:SL2.40ch05 gene_region:7010701-7013932 transcript_region:SL2.40ch05:7010701..7013932- go_terms:GO:0008047 functional_description:"Cysteine desulfuration protein SufE (AHRD V1 *-*- Q2RNM6_RHORT); contains Interpro domain(s) IPR003808 Fe-S metabolism associated SufE "; GO:0008047 NbS00044642g0008.1 protein AED:0.24 eAED:0.47 QI:38|0|0|1|0|0|2|0|52; (*GB) gi|114329648|ref|YP_740467.1| (e_value=1e-20) RNA polymerase beta subunit [Citrus sinensis];; (*SWP) sp|Q09MI6|RPOB_CITSI (e_value=4e-22) DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=1e-21) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g017750.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7358767-7359623 transcript_region:SL2.40ch12:7358767..7359623- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WEM8_LIQST); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00004917g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|224116970|ref|XP_002331797.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-16) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05660.1 (e_value=2e-25) | Symbols: AtRLP33, RLP33 | receptor like protein 33 | chr3:1649258-1652001 REVERSE LENGTH=875;; (*ITAG) Solyc08g077740.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58806102-58808984 transcript_region:SL2.40ch08:58806102..58808984- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00004917g0008.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|3|0|308; (*GB) gi|359493544|ref|XP_002267509.2| (e_value=9e-48) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=5e-32) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G11080.1 (e_value=9e-40) | Symbols: AtRLP35, RLP35 | receptor like protein 35 | chr3:3470481-3473312 FORWARD LENGTH=943;; (*ITAG) Solyc08g077740.1.1 (e_value=6e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58806102-58808984 transcript_region:SL2.40ch08:58806102..58808984- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00004917g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|182; (*GB) gi|359493541|ref|XP_003634623.1| (e_value=3e-43) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-16) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G33030.1 (e_value=3e-28) | Symbols: AtRLP25, RLP25 | receptor like protein 25 | chr2:14017684-14018340 REVERSE LENGTH=218;; (*ITAG) Solyc08g077740.1.1 (e_value=7e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58806102-58808984 transcript_region:SL2.40ch08:58806102..58808984- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00007928g0003.1 protein AED:0.26 eAED:0.27 QI:0|0.33|0.25|1|1|1|4|0|105; (*GB) gi|224085982|ref|XP_002307764.1| (e_value=5e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYI3|ECH2_ARATH (e_value=2e-28) Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2 PE=1 SV=1;; (*TAIR) AT1G76150.1 (e_value=2e-29) | Symbols: ECH2, ATECH2 | enoyl-CoA hydratase 2 | chr1:28575236-28577637 REVERSE LENGTH=309;; (*ITAG) Solyc12g094450.1.1 (e_value=5e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63006889-63010224 transcript_region:SL2.40ch12:63006889..63010224- go_terms:GO:0006508,GO:0008152 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B4FP93_MAIZE); contains Interpro domain(s) IPR002539 MaoC-like dehydratase "; GO:0006508,GO:0008152 NbS00023195g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.88|0.9|1|1|1|10|397|383; (*GB) gi|356495045|ref|XP_003516391.1| (e_value=4e-126) PREDICTED: LOW QUALITY PROTEIN: vacuolar cation/proton exchanger 3-like [Glycine max];; (*SWP) sp|Q93Z81|CAX3_ARATH (e_value=1e-84) Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1;; (*TAIR) AT3G51860.1 (e_value=1e-85) | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation exchanger 3 | chr3:19239458-19242519 FORWARD LENGTH=459;; (*ITAG) Solyc09g005260.2.1 (e_value=3e-101) genomic_reference:SL2.40ch09 gene_region:191528-195466 transcript_region:SL2.40ch09:191528..195466- go_terms:GO:0015369 functional_description:"Calcium/proton exchanger (AHRD V1 **** C4JVH2_UNCRE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0015369 NbS00023195g0012.1 protein AED:0.36 eAED:0.36 QI:128|0.88|0.8|0.9|0.66|0.6|10|0|346; (*GB) gi|225440684|ref|XP_002274764.1| (e_value=6e-168) PREDICTED: thylakoid ADP,ATP carrier protein, chloroplastic [Vitis vinifera];; (*SWP) sp|O65023|EAAC_ARATH (e_value=9e-149) Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=2;; (*TAIR) AT3G51870.1 (e_value=7e-150) | Symbols: | Mitochondrial substrate carrier family protein | chr3:19243978-19246611 FORWARD LENGTH=381;; (*ITAG) Solyc09g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:183245-189258 transcript_region:SL2.40ch09:183245..189258- go_terms:GO:0005347,GO:0015228 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C6HT14_AJECH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005347,GO:0015228 NbS00023195g0013.1 protein AED:0.23 eAED:0.25 QI:0|0.76|0.57|1|0.53|0.42|14|245|479; (*GB) gi|225440682|ref|XP_002274737.1| (e_value=8e-151) PREDICTED: UPF0420 protein-like [Vitis vinifera];; (*TAIR) AT5G01510.1 (e_value=1e-117) | Symbols: RUS5 | Protein of unknown function, DUF647 | chr5:201702-205151 FORWARD LENGTH=509;; (*ITAG) Solyc09g005230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:175107-180103 transcript_region:SL2.40ch09:175107..180103- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00034047g0011.1 protein AED:0.11 eAED:0.11 QI:89|0.73|0.79|0.87|0.56|0.66|24|1185|567; (*GB) gi|224056777|ref|XP_002299018.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G30680.1 (e_value=0.0) | Symbols: | toprim domain-containing protein | chr1:10881665-10886060 FORWARD LENGTH=709;; (*ITAG) Solyc02g022830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14806673-14840767 transcript_region:SL2.40ch02:14806673..14840767+ go_terms:GO:0006260 functional_description:"DNA primase/helicase (AHRD V1 **-- C9KX74_9BACE); contains Interpro domain(s) IPR006154 Toprim domain, subgroup "; GO:0006260 NbS00034047g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|147846526|emb|CAN81650.1| (e_value=0.0) hypothetical protein VITISV_003752 [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=8e-158) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20840.1 (e_value=5e-173) | Symbols: | FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539;; (*ITAG) Solyc02g022850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:14916195-14917820 transcript_region:SL2.40ch02:14916195..14917820- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00059967g0012.1 protein AED:0.24 eAED:0.25 QI:200|0.83|0.69|1|0.91|0.84|13|0|438; (*GB) gi|255538078|ref|XP_002510104.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5S1U6|IFRD1_PIG (e_value=1e-32) Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1;; (*TAIR) AT1G27760.3 (e_value=0.0) | Symbols: SAT32, ATSAT32 | interferon-related developmental regulator family protein / IFRD protein family | chr1:9668895-9671322 FORWARD LENGTH=441;; (*ITAG) Solyc04g077920.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60371506-60376316 transcript_region:SL2.40ch04:60371506..60376316+ go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00059967g0009.1 protein AED:0.28 eAED:0.28 QI:61|1|0.88|1|0.87|0.88|9|0|841; (*GB) gi|359492547|ref|XP_003634430.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854438 [Vitis vinifera];; (*TAIR) AT1G27752.1 (e_value=0.0) | Symbols: | Ubiquitin system component Cue protein | chr1:9662250-9667318 FORWARD LENGTH=873;; (*ITAG) Solyc04g077930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60382459-60392721 transcript_region:SL2.40ch04:60382459..60392721- functional_description:"Activating signal cointegrator 1 complex subunit 2 (AHRD V1 *--- Q5E9R9_BOVIN); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00034845g0008.1 protein AED:0.20 eAED:0.21 QI:0|0.33|0.14|0.71|0.5|0.28|7|0|249; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=9e-84) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q8LFP7|NIP12_ARATH (e_value=5e-77) Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2;; (*TAIR) AT4G18910.1 (e_value=4e-78) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc06g073590.2.1 (e_value=1e-130) genomic_reference:SL2.40ch06 gene_region:41786363-41788787 transcript_region:SL2.40ch06:41786363..41788787+ go_terms:GO:0015250 functional_description:"Aquaporin Z transmembrane water channel (AHRD V1 **** A4SKG8_AERS4); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00020974g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.5|0.75|0.66|0.75|4|0|333; (*GB) gi|225469216|ref|XP_002264407.1| (e_value=5e-105) PREDICTED: transcription factor bHLH93-like [Vitis vinifera];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=2e-75) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=2e-76) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc02g091690.2.1 (e_value=5e-132) genomic_reference:SL2.40ch02 gene_region:47505178-47506799 transcript_region:SL2.40ch02:47505178..47506799+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **-* A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00002827g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|375; (*GB) gi|225451061|ref|XP_002262723.1| (e_value=5e-157) PREDICTED: uncharacterized protein LOC100255595 [Vitis vinifera];; (*SWP) sp|Q99288|DET1_YEAST (e_value=1e-36) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=7e-150) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc10g045430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28869219-28874687 transcript_region:SL2.40ch10:28869219..28874687+ go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00017682g0003.1 protein AED:0.08 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|18397011|ref|NP_564325.1| (e_value=3e-38) Alba DNA/RNA-binding protein [Arabidopsis thaliana];; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-39) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT1G29250.1 (e_value=6e-41) | Symbols: | Alba DNA/RNA-binding protein | chr1:10223461-10224592 REVERSE LENGTH=130;; (*ITAG) Solyc06g068050.2.1 (e_value=2e-37) genomic_reference:SL2.40ch06 gene_region:38559930-38563271 transcript_region:SL2.40ch06:38559930..38563271+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00017682g0007.1 protein AED:0.22 eAED:0.22 QI:33|0.4|0.33|1|1|1|6|174|141; (*GB) gi|224112525|ref|XP_002316220.1| (e_value=4e-19) high mobility group family [Populus trichocarpa];; (*SWP) sp|O49595|HMGB1_ARATH (e_value=1e-17) High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1;; (*TAIR) AT3G51880.4 (e_value=5e-19) | Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161;; (*ITAG) Solyc03g032130.2.1 (e_value=5e-14) genomic_reference:SL2.40ch03 gene_region:8915382-8917745 transcript_region:SL2.40ch03:8915382..8917745- go_terms:GO:0005634 functional_description:"High mobility group protein (AHRD V1 *--- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0005634 NbS00032250g0015.1 protein AED:0.04 eAED:0.04 QI:101|1|1|1|0.66|0.75|4|287|385; (*GB) gi|225434544|ref|XP_002276936.1| (e_value=2e-140) PREDICTED: probable protein phosphatase 2C 25 isoform 1 [Vitis vinifera];; (*SWP) sp|O80871|P2C25_ARATH (e_value=3e-123) Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1;; (*TAIR) AT2G30020.1 (e_value=2e-124) | Symbols: | Protein phosphatase 2C family protein | chr2:12814437-12815904 FORWARD LENGTH=396;; (*ITAG) Solyc05g052520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61892748-61895062 transcript_region:SL2.40ch05:61892748..61895062- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q3V656_SOLTU); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00032250g0020.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.85|1|0.84|0.74|27|1333|1143; (*GB) gi|225434540|ref|XP_002276855.1| (e_value=0.0) PREDICTED: clathrin heavy chain 2 [Vitis vinifera];; (*SWP) sp|Q0WNJ6|CLAH1_ARATH (e_value=0.0) Clathrin heavy chain 1 OS=Arabidopsis thaliana GN=CHC1 PE=1 SV=1;; (*TAIR) AT3G11130.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:3482575-3491667 REVERSE LENGTH=1705;; (*ITAG) Solyc05g052510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61866407-61885279 transcript_region:SL2.40ch05:61866407..61885279- go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00032250g0023.1 protein AED:0.25 eAED:0.25 QI:124|1|1|1|1|1|7|929|553; (*GB) gi|225448534|ref|XP_002273466.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT23 [Vitis vinifera];; (*SWP) sp|Q9SIZ3|PMTN_ARATH (e_value=0.0) Probable methyltransferase PMT23 OS=Arabidopsis thaliana GN=At2g40280 PE=1 SV=2;; (*TAIR) AT2G40280.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16825707-16828300 REVERSE LENGTH=589;; (*ITAG) Solyc05g052500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61857465-61864807 transcript_region:SL2.40ch05:61857465..61864807+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00032250g0003.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|359486385|ref|XP_002273190.2| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100243292 [Vitis vinifera];; (*TAIR) AT5G05500.1 (e_value=4e-67) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:1629716-1630267 FORWARD LENGTH=183;; (*ITAG) Solyc05g052500.2.1 (e_value=5e-85) genomic_reference:SL2.40ch05 gene_region:61857465-61864807 transcript_region:SL2.40ch05:61857465..61864807+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00007177g0014.1 protein AED:0.26 eAED:0.27 QI:0|0.73|0.62|0.93|0.6|0.56|16|0|670; (*GB) gi|297739856|emb|CBI30038.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG24|SRF2_ARATH (e_value=9e-178) Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1;; (*TAIR) AT5G06820.1 (e_value=7e-179) | Symbols: SRF2 | STRUBBELIG-receptor family 2 | chr5:2112994-2116663 FORWARD LENGTH=735;; (*ITAG) Solyc03g059020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:24658763-24662836 transcript_region:SL2.40ch03:24658763..24662836+ go_terms:GO:0004702 functional_description:"Receptor like kinase, RLK"; GO:0004702 NbS00007177g0013.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|299|397; (*GB) gi|295815790|gb|ADG36380.1| (e_value=3e-116) promoter-binding protein SPL9 [Vitis vinifera];; (*SWP) sp|Q700W2|SPL9_ARATH (e_value=1e-41) Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2;; (*TAIR) AT2G42200.1 (e_value=8e-43) | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375;; (*ITAG) Solyc10g078700.1.1 (e_value=1e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59754038-59758728 transcript_region:SL2.40ch10:59754038..59758728- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B1_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00007177g0022.1 protein AED:0.05 eAED:0.05 QI:153|0.88|0.7|1|1|1|10|204|558; (*GB) gi|147790753|emb|CAN63789.1| (e_value=0.0) hypothetical protein VITISV_000289 [Vitis vinifera];; (*SWP) sp|Q9FG23|CK5P3_ARATH (e_value=0.0) CDK5RAP3-like protein OS=Arabidopsis thaliana GN=At5g06830 PE=2 SV=2;; (*TAIR) AT5G06830.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr5:2116882-2119559 REVERSE LENGTH=549;; (*ITAG) Solyc03g059030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:24663400-24671909 transcript_region:SL2.40ch03:24663400..24671909- go_terms:GO:0042808 functional_description:"CDK5 regulatory subunit associated protein 3 (AHRD V1 ***- Q6IQA6_DANRE); contains Interpro domain(s) IPR008491 Protein of unknown function DUF773 "; GO:0042808 NbS00007177g0021.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|0.66|3|0|244; (*GB) gi|225441401|ref|XP_002275225.1| (e_value=3e-50) PREDICTED: coiled-coil domain-containing protein 75 [Vitis vinifera];; (*SWP) sp|Q3UFS4|CCD75_MOUSE (e_value=1e-11) Coiled-coil domain-containing protein 75 OS=Mus musculus GN=Ccdc75 PE=2 SV=2;; (*TAIR) AT3G57910.1 (e_value=1e-39) | Symbols: | D111/G-patch domain-containing protein | chr3:21442771-21443968 FORWARD LENGTH=265;; (*ITAG) Solyc11g065380.1.1 (e_value=8e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47902199-47906481 transcript_region:SL2.40ch11:47902199..47906481- go_terms:GO:0005515 functional_description:"Coiled-coil domain-containing protein 75 (AHRD V1 ***- B9EQ35_SALSA); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005515 NbS00007177g0002.1 protein AED:0.35 eAED:0.36 QI:10|0.6|0.83|1|1|1|6|204|220; (*GB) gi|225441393|ref|XP_002278312.1| (e_value=4e-102) PREDICTED: uncharacterized protein LOC100241760 [Vitis vinifera];; (*SWP) sp|O48529|STR9_ARATH (e_value=1e-97) Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1;; (*TAIR) AT2G42220.1 (e_value=1e-98) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17592105-17593305 FORWARD LENGTH=234;; (*ITAG) Solyc03g053110.2.1 (e_value=1e-108) genomic_reference:SL2.40ch03 gene_region:20228686-20232057 transcript_region:SL2.40ch03:20228686..20232057- functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00049837g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.6|0.66|1|0.2|0|6|49|375; (*GB) gi|225462781|ref|XP_002263748.1| (e_value=3e-108) PREDICTED: probable pectinesterase 29-like [Vitis vinifera];; (*SWP) sp|Q4PSN0|PME29_ARATH (e_value=2e-102) Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1;; (*TAIR) AT3G24130.1 (e_value=1e-103) | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335;; (*ITAG) Solyc09g091730.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:66310129-66313134 transcript_region:SL2.40ch09:66310129..66313134- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9RWI7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00013924g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|133 NbS00030792g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.25|1|0.66|0.75|4|0|216; (*GB) gi|359491215|ref|XP_003634243.1| (e_value=3e-67) PREDICTED: U-box domain-containing protein 54-like [Vitis vinifera];; (*TAIR) AT5G47740.2 (e_value=3e-28) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=246;; (*ITAG) Solyc03g112330.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:56815336-56817659 transcript_region:SL2.40ch03:56815336..56817659+ go_terms:GO:0006950 functional_description:"U-box domain-containing protein 33 (AHRD V1 ***- PUB33_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00030792g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.76|0.78|1|1|1|14|164|853; (*GB) gi|115315698|gb|ABI93948.1| (e_value=0.0) methylputrescine oxidase [Nicotiana tabacum];; (*SWP) sp|Q07123|AMO2_ARTS1 (e_value=9e-159) Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc08g014330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4055000-4062570 transcript_region:SL2.40ch08:4055000..4062570+ go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbC25846611g0001.1 protein AED:0.04 eAED:0.08 QI:9|-1|0|1|-1|1|1|0|60; (*ITAG) Solyc07g063290.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:63018202-63022291 transcript_region:SL2.40ch07:63018202..63022291- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019481 Transcription factor TFIIIC, tau55-related "; NbS00031743g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.42|1|0.83|0.85|7|0|410; (*GB) gi|147798997|emb|CAN72570.1| (e_value=0.0) hypothetical protein VITISV_036996 [Vitis vinifera];; (*TAIR) AT3G13510.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr3:4403776-4405741 FORWARD LENGTH=419;; (*ITAG) Solyc01g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:382300-385329 transcript_region:SL2.40ch01:382300..385329+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00031743g0004.1 protein AED:0.78 eAED:0.91 QI:0|0|0|0.33|1|1|6|0|71 NbS00043512g0006.1 protein AED:0.15 eAED:0.15 QI:166|0.8|0.83|1|0.6|0.5|6|221|275; (*GB) gi|2114050|dbj|BAA20076.1| (e_value=0.0) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=0.0) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=2e-176) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc12g056220.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47535351-47537122 transcript_region:SL2.40ch12:47535351..47537122- go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00000522g0016.1 protein AED:0.23 eAED:0.26 QI:0|0.8|0.5|1|0.6|0.5|6|0|596; (*GB) gi|297742329|emb|CBI34478.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23840.1 (e_value=3e-132) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:12400379-12403190 FORWARD LENGTH=597;; (*ITAG) Solyc08g082270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62274283-62279603 transcript_region:SL2.40ch08:62274283..62279603+ go_terms:GO:0005515 functional_description:"Leucine-rich repeat domain protein (AHRD V1 **-- A6C938_9PLAN); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515 NbS00000522g0013.1 protein AED:0.21 eAED:0.21 QI:283|0.94|1|1|0.76|0.94|18|53|673; (*GB) gi|193290710|gb|ACF17663.1| (e_value=0.0) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=0.0) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc08g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62279956-62289714 transcript_region:SL2.40ch08:62279956..62289714- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00000522g0011.1 protein AED:0.34 eAED:0.34 QI:65|0.85|0.87|1|1|1|8|45|444; (*GB) gi|356548765|ref|XP_003542770.1| (e_value=1e-127) PREDICTED: mitochondrial inner membrane protein OXA1-like [Glycine max];; (*SWP) sp|Q42191|OXA1_ARATH (e_value=4e-104) Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2;; (*TAIR) AT5G62050.1 (e_value=3e-105) | Symbols: OXA1, ATOXA1, OXA1AT | homolog of yeast oxidase assembly 1 (OXA1) | chr5:24924062-24926758 REVERSE LENGTH=429;; (*ITAG) Solyc08g008320.2.1 (e_value=3e-144) genomic_reference:SL2.40ch08 gene_region:2747425-2756377 transcript_region:SL2.40ch08:2747425..2756377- go_terms:GO:0015450 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- OXAA_WOLSU); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0015450 NbS00011508g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|635; (*GB) gi|224080986|ref|XP_002306254.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9SIT6|AB5G_ARATH (e_value=0.0) ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1;; (*TAIR) AT2G13610.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:5673827-5675776 REVERSE LENGTH=649;; (*ITAG) Solyc05g056470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64893438-64895282 transcript_region:SL2.40ch05:64893438..64895282- go_terms:GO:0017127 functional_description:"ABC transporter G family member 5 (AHRD V1 **** AB5G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00011508g0006.1 protein AED:0.10 eAED:0.10 QI:144|1|1|1|1|1|4|686|266 NbS00011508g0106.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0|1|0.5|0.33|3|0|441 NbS00023525g0004.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|137; (*GB) gi|356576357|ref|XP_003556299.1| (e_value=4e-60) PREDICTED: probable histone H2B.1-like [Glycine max];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=7e-61) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=2e-61) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc03g071620.1.1 (e_value=5e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:41237042-41237467 transcript_region:SL2.40ch03:41237042..41237467+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- A2IBL2_NICBE); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00023525g0008.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.66|1|0.6|0.66|6|392|261; (*GB) gi|225448890|ref|XP_002270872.1| (e_value=1e-116) PREDICTED: uncharacterized protein SYNPCC7002_A1590 [Vitis vinifera];; (*TAIR) AT5G04440.1 (e_value=2e-116) | Symbols: | Protein of unknown function (DUF1997) | chr5:1254957-1256624 FORWARD LENGTH=255;; (*ITAG) Solyc05g055430.2.1 (e_value=1e-140) genomic_reference:SL2.40ch05 gene_region:64231117-64236053 transcript_region:SL2.40ch05:64231117..64236053- functional_description:"(RAP Annotation release2) Galactose-binding like domain containing protein (AHRD V1 **-- Q10RT4_ORYSJ); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 "; NbS00013544g0002.1 protein AED:0.45 eAED:0.80 QI:0|1|0|1|1|1|2|0|114; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*TAIR) AT2G25320.1 (e_value=2e-15) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00013544g0003.1 protein AED:0.31 eAED:0.31 QI:0|1|0.8|1|1|1|10|0|333; (*GB) gi|225452280|ref|XP_002270990.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VYR5|PP351_ARATH (e_value=2e-156) Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1;; (*TAIR) AT4G35850.1 (e_value=1e-157) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16983638-16986681 FORWARD LENGTH=444;; (*ITAG) Solyc01g112020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89905974-89912214 transcript_region:SL2.40ch01:89905974..89912214- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MUM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00053938g0003.1 protein AED:0.02 eAED:0.02 QI:40|1|1|1|1|1|6|195|353; (*GB) gi|255540161|ref|XP_002511145.1| (e_value=3e-125) Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=1e-27) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT5G50770.1 (e_value=2e-122) | Symbols: AtHSD6, HSD6 | hydroxysteroid dehydrogenase 6 | chr5:20646790-20648696 REVERSE LENGTH=342;; (*ITAG) Solyc07g052270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58091484-58095846 transcript_region:SL2.40ch07:58091484..58095846- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00002773g0004.1 protein AED:0.21 eAED:0.21 QI:407|0.88|0.9|1|0.66|0.7|10|303|381; (*GB) gi|135669|sp|P14232.1|TGA1A_TOBAC (e_value=0.0) RecName: Full=TGACG-sequence-specific DNA-binding protein TGA-1A; Short=ASF-1 protein; Short=TGA1a;; (*SWP) sp|P14232|TGA1A_TOBAC (e_value=0.0) TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1;; (*TAIR) AT5G65210.5 (e_value=7e-155) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g011670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4150679-4155134 transcript_region:SL2.40ch04:4150679..4155134+ go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00003479g0023.1 protein AED:0.01 eAED:0.02 QI:0|1|0.66|1|1|0.66|3|0|151; (*GB) gi|255569252|ref|XP_002525594.1| (e_value=5e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27660.1 (e_value=4e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 115 Blast hits to 109 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr4:13817249-13818027 REVERSE LENGTH=182;; (*ITAG) Solyc03g080170.2.1 (e_value=3e-67) genomic_reference:SL2.40ch03 gene_region:45601283-45603581 transcript_region:SL2.40ch03:45601283..45603581- functional_description:"Genomic DNA chromosome 5 TAC clone K18G13 (AHRD V1 ***- Q9FK26_ARATH)"; NbS00003479g0024.1 protein AED:0.29 eAED:0.29 QI:0|1|0.66|1|0.5|0.66|3|0|207; (*GB) gi|359490767|ref|XP_003634163.1| (e_value=6e-65) PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q94JX9|NACA2_ARATH (e_value=2e-57) Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2;; (*TAIR) AT3G49470.1 (e_value=2e-58) | Symbols: NACA2 | nascent polypeptide-associated complex subunit alpha-like protein 2 | chr3:18341072-18342273 FORWARD LENGTH=217;; (*ITAG) Solyc03g080160.2.1 (e_value=2e-74) genomic_reference:SL2.40ch03 gene_region:45598367-45600275 transcript_region:SL2.40ch03:45598367..45600275- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6SU89_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00003479g0026.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.4|1|0.75|0.6|5|0|296; (*GB) gi|359490769|ref|XP_003634164.1| (e_value=6e-148) PREDICTED: peroxidase 5-like isoform 1 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=2e-149) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT3G01190.1 (e_value=7e-79) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc03g080150.2.1 (e_value=2e-174) genomic_reference:SL2.40ch03 gene_region:45596850-45598444 transcript_region:SL2.40ch03:45596850..45598444+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** Q9SSZ9_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00003479g0006.1 protein AED:0.11 eAED:0.12 QI:127|0.5|0.71|1|0.83|0.71|7|294|1171; (*GB) gi|359490839|ref|XP_003634177.1| (e_value=6e-55) PREDICTED: uncharacterized protein LOC100853355 [Vitis vinifera];; (*ITAG) Solyc03g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45588928-45594478 transcript_region:SL2.40ch03:45588928..45594478+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003479g0020.1 protein AED:0.28 eAED:0.28 QI:190|1|1|1|0.75|0.6|5|184|363; (*GB) gi|396589|emb|CAA52461.1| (e_value=0.0) catechol O-methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9FQY8|COMT1_CAPAN (e_value=0.0) Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2;; (*TAIR) AT5G54160.1 (e_value=0.0) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc03g080180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45613423-45617312 transcript_region:SL2.40ch03:45613423..45617312+ go_terms:GO:0017096 functional_description:"O-methyltransferase (AHRD V1 **** Q9LWB8_9ROSI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0017096 NbS00017237g0013.1 protein AED:0.04 eAED:0.04 QI:136|1|1|1|1|1|2|312|647; (*GB) gi|147866236|emb|CAN82042.1| (e_value=8e-86) hypothetical protein VITISV_033523 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=1e-66) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc05g008830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3057292-3060357 transcript_region:SL2.40ch05:3057292..3060357+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00017237g0017.1 protein AED:0.15 eAED:0.21 QI:0|0|0|0.5|0.66|0.75|4|0|213; (*ITAG) Solyc08g043200.1.1 (e_value=8e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:30103548-30104252 transcript_region:SL2.40ch08:30103548..30104252+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017237g0015.1 protein AED:0.17 eAED:0.17 QI:61|1|1|1|1|1|10|245|835; (*GB) gi|255570663|ref|XP_002526286.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*SWP) sp|F4I1S7|ELP2_ARATH (e_value=0.0) Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1;; (*TAIR) AT1G49540.1 (e_value=0.0) | Symbols: ELP2, AtELP2 | elongator protein 2 | chr1:18333767-18337382 REVERSE LENGTH=838;; (*ITAG) Solyc06g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2172458-2193332 transcript_region:SL2.40ch06:2172458..2193332+ go_terms:GO:0019901 functional_description:"Elongator complex protein 2 (AHRD V1 **-- B0X467_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0019901 NbS00038240g0007.1 protein AED:0.10 eAED:0.10 QI:116|0.85|0.8|1|0.78|0.86|15|202|921; (*GB) gi|255581984|ref|XP_002531790.1| (e_value=6e-128) cell division control protein, putative [Ricinus communis];; (*SWP) sp|P50582|HSK1_SCHPO (e_value=3e-19) Cell cycle serine/threonine-protein kinase hsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsk1 PE=1 SV=1;; (*TAIR) AT4G16970.1 (e_value=1e-73) | Symbols: | Protein kinase superfamily protein | chr4:9551516-9555766 REVERSE LENGTH=889;; (*ITAG) Solyc08g077990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59037374-59044064 transcript_region:SL2.40ch08:59037374..59044064- go_terms:GO:0006468 functional_description:"Kinase like protein (AHRD V1 *-*- Q0WPK0_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00038240g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.66|1|0.8|0.66|6|179|236; (*GB) gi|297790937|ref|XP_002863353.1| (e_value=3e-73) vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LVU1|VAP21_ARATH (e_value=9e-74) Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1;; (*TAIR) AT5G47180.2 (e_value=7e-75) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161384-19163265 REVERSE LENGTH=220;; (*ITAG) Solyc08g078000.2.1 (e_value=1e-108) genomic_reference:SL2.40ch08 gene_region:59044988-59050700 transcript_region:SL2.40ch08:59044988..59050700- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MPW2_ARALY); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005198 NbS00014238g0015.1 protein AED:0.57 eAED:0.57 QI:0|0|0.5|0.5|1|1|2|60|59 NbS00014238g0011.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|80|294; (*GB) gi|4027895|gb|AAC96079.1| (e_value=1e-170) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q7XWU8|EXPA1_ORYSJ (e_value=7e-135) Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2;; (*TAIR) AT1G20190.1 (e_value=9e-132) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc12g089380.1.1 (e_value=2e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62933298-62935296 transcript_region:SL2.40ch12:62933298..62935296- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00014238g0014.1 protein AED:0.12 eAED:0.12 QI:50|1|1|1|0.66|0.75|4|294|252; (*GB) gi|81076617|gb|ABB55396.1| (e_value=2e-98) unknown [Solanum tuberosum];; (*TAIR) AT1G20225.1 (e_value=2e-75) | Symbols: | Thioredoxin superfamily protein | chr1:7007966-7009318 REVERSE LENGTH=233;; (*ITAG) Solyc12g094380.1.1 (e_value=4e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62939667-62940927 transcript_region:SL2.40ch12:62939667..62940927- functional_description:"DSBA oxidoreductase (AHRD V1 ***- A4T4K6_MYCGI); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00014238g0012.1 protein AED:0.21 eAED:0.21 QI:406|0.75|1|1|1|1|5|170|394; (*GB) gi|24745927|dbj|BAC23045.1| (e_value=0.0) monooxygenase [Solanum tuberosum];; (*TAIR) AT4G38540.1 (e_value=4e-129) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr4:18023187-18024827 FORWARD LENGTH=407;; (*ITAG) Solyc12g013690.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4532510-4535243 transcript_region:SL2.40ch12:4532510..4535243- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00014238g0013.1 protein AED:0.37 eAED:0.37 QI:89|1|1|1|0.87|0.88|9|404|254; (*GB) gi|358248282|ref|NP_001239854.1| (e_value=1e-64) uncharacterized protein LOC100818986 [Glycine max];; (*SWP) sp|Q8N5L8|RP25L_HUMAN (e_value=1e-16) Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1;; (*TAIR) AT1G20220.1 (e_value=8e-54) | Symbols: | Alba DNA/RNA-binding protein | chr1:7005090-7007285 REVERSE LENGTH=315;; (*ITAG) Solyc04g081880.2.1 (e_value=2e-53) genomic_reference:SL2.40ch04 gene_region:63335224-63339615 transcript_region:SL2.40ch04:63335224..63339615- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_RAT); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00022375g0004.1 protein AED:0.44 eAED:0.66 QI:0|0.5|0|1|0.5|0.66|3|0|111; (*GB) gi|359478597|ref|XP_002275902.2| (e_value=2e-35) PREDICTED: ABC transporter B family member 25, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LVM1|AB25B_ARATH (e_value=8e-31) ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1;; (*TAIR) AT5G58270.1 (e_value=6e-32) | Symbols: STA1, ATATM3, ATM3 | ABC transporter of the mitochondrion 3 | chr5:23562168-23567040 FORWARD LENGTH=728;; (*ITAG) Solyc09g055350.2.1 (e_value=4e-39) genomic_reference:SL2.40ch09 gene_region:35636998-35672737 transcript_region:SL2.40ch09:35636998..35672737+ go_terms:GO:0015232 functional_description:"ABC transporter ATP-binding/permease protein (AHRD V1 **** A3SXQ3_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015232 NbS00012609g0009.1 protein AED:0.02 eAED:0.09 QI:0|1|0|1|0|0|2|0|363; (*GB) gi|1749825|emb|CAA96528.1| (e_value=0.0) G protein beta-subunit-like protein [Nicotiana plumbaginifolia];; (*SWP) sp|P49026|GBLP_TOBAC (e_value=0.0) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1;; (*TAIR) AT3G18130.1 (e_value=0.0) | Symbols: RACK1C_AT | receptor for activated C kinase 1C | chr3:6211109-6212371 REVERSE LENGTH=326;; (*ITAG) Solyc03g119040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61807988-61810035 transcript_region:SL2.40ch03:61807988..61810035- go_terms:GO:0005080,GO:0000166 functional_description:"Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B4FKM1_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005080,GO:0000166 NbS00012609g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.88|0.7|1|1|1|10|0|1092; (*GB) gi|359491495|ref|XP_002278062.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268025 [Vitis vinifera];; (*SWP) sp|Q54NA6|MYBL_DICDI (e_value=6e-46) Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1;; (*TAIR) AT3G18100.1 (e_value=2e-163) | Symbols: MYB4R1, AtMYB4R1 | myb domain protein 4r1 | chr3:6200689-6204583 FORWARD LENGTH=847;; (*ITAG) Solyc03g119050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61811472-61822308 transcript_region:SL2.40ch03:61811472..61822308- go_terms:GO:0006508,GO:0003677,GO:0045449 functional_description:"Myb (AHRD V1 *-*- Q948S5_TOBAC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0006508,GO:0003677,GO:0045449 NbS00049401g0011.1 protein AED:0.12 eAED:0.12 QI:450|0.5|0.2|1|0.25|0.6|5|0|322; (*GB) gi|255553221|ref|XP_002517653.1| (e_value=2e-170) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=1e-109) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT1G52540.1 (e_value=3e-111) | Symbols: | Protein kinase superfamily protein | chr1:19570298-19571884 REVERSE LENGTH=350;; (*ITAG) Solyc03g116760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60099710-60104460 transcript_region:SL2.40ch03:60099710..60104460- go_terms:GO:0005515,GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase FEI 1 (AHRD V1 **** FEI1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00049401g0007.1 protein AED:0.37 eAED:0.41 QI:0|0.33|0.25|1|1|1|4|0|93; (*GB) gi|297834462|ref|XP_002885113.1| (e_value=4e-40) hypothetical protein ARALYDRAFT_479043 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q27GK7|TPR4_ARATH (e_value=3e-41) Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2;; (*TAIR) AT3G15880.3 (e_value=3e-42) | Symbols: WSIP2 | WUS-interacting protein 2 | chr3:5364792-5371869 REVERSE LENGTH=1125;; (*ITAG) Solyc03g116750.2.1 (e_value=2e-45) genomic_reference:SL2.40ch03 gene_region:60083005-60092974 transcript_region:SL2.40ch03:60083005..60092974- go_terms:GO:0005515 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515 NbS00029794g0006.1 protein AED:0.14 eAED:0.15 QI:4|1|0.7|1|1|0.8|10|0|569; (*GB) gi|295919782|gb|ADG60271.1| (e_value=0.0) cycloartenol synthase [Withania somnifera];; (*SWP) sp|O82139|CAS1_PANGI (e_value=0.0) Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=0.0) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc04g070980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55417859-55433814 transcript_region:SL2.40ch04:55417859..55433814+ go_terms:GO:0000250 functional_description:"Lanosterol synthase (AHRD V1 **** Q1ERD3_LOTJA); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0000250 NbS00029794g0007.1 protein AED:0.71 eAED:0.75 QI:0|0.33|0|0.75|1|0.5|4|0|147; (*GB) gi|295919782|gb|ADG60271.1| (e_value=5e-51) cycloartenol synthase [Withania somnifera];; (*SWP) sp|O82139|CAS1_PANGI (e_value=6e-48) Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=3e-42) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc04g070980.2.1 (e_value=6e-53) genomic_reference:SL2.40ch04 gene_region:55417859-55433814 transcript_region:SL2.40ch04:55417859..55433814+ go_terms:GO:0000250 functional_description:"Lanosterol synthase (AHRD V1 **** Q1ERD3_LOTJA); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0000250 NbS00047578g0006.1 protein AED:0.00 eAED:0.00 QI:266|1|1|1|0.5|0.6|5|231|314; (*GB) gi|10798640|emb|CAC12820.1| (e_value=1e-37) mitochondrial 2-oxoglutarate/malate carrier protein [Nicotiana tabacum];; (*TAIR) AT5G19760.1 (e_value=2e-36) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=6e-39) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00047578g0007.1 protein AED:0.24 eAED:0.25 QI:0|1|0.71|1|1|1|7|357|295; (*GB) gi|225423585|ref|XP_002273557.1| (e_value=3e-128) PREDICTED: MOSC domain-containing protein 1, mitochondrial [Vitis vinifera];; (*SWP) sp|Q922Q1|MOSC2_MOUSE (e_value=4e-29) MOSC domain-containing protein 2, mitochondrial OS=Mus musculus GN=Marc2 PE=1 SV=1;; (*TAIR) AT1G30910.1 (e_value=2e-120) | Symbols: | Molybdenum cofactor sulfurase family protein | chr1:11000912-11002801 FORWARD LENGTH=318;; (*ITAG) Solyc02g081880.2.1 (e_value=1e-133) genomic_reference:SL2.40ch02 gene_region:40236661-40240294 transcript_region:SL2.40ch02:40236661..40240294- go_terms:GO:0005515 functional_description:"Molybdenum cofactor sulfurase protein-like (AHRD V1 **-- Q653D7_ORYSJ); contains Interpro domain(s) IPR005303 MOSC, N-terminal beta barrel "; GO:0005515 NbS00009074g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|302; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=2e-88) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=5e-68) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=3e-69) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc04g078530.1.1 (e_value=8e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60834044-60835767 transcript_region:SL2.40ch04:60834044..60835767- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D0TLQ4_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00009074g0015.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0|1|0.16|0|7|0|283; (*GB) gi|255538206|ref|XP_002510168.1| (e_value=5e-45) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g078520.2.1 (e_value=5e-83) genomic_reference:SL2.40ch04 gene_region:60830112-60832261 transcript_region:SL2.40ch04:60830112..60832261+ functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *-*- Y1615_ARATH)"; NbS00009074g0016.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|0|1|2|0|164; (*GB) gi|255567873|ref|XP_002524914.1| (e_value=3e-81) rer1 protein, putative [Ricinus communis];; (*SWP) sp|O48670|RER1A_ARATH (e_value=9e-70) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=7e-71) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc04g078510.2.1 (e_value=1e-96) genomic_reference:SL2.40ch04 gene_region:60824846-60828559 transcript_region:SL2.40ch04:60824846..60828559+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00009074g0105.1 protein AED:0.05 eAED:0.05 QI:247|0.6|0.83|1|0|0.5|6|1500|189 NbS00009074g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|534 NbS00009074g0102.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|240 NbS00009074g0210.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.33|0.25|4|0|246 NbS00009074g0209.1 protein AED:0.14 eAED:0.14 QI:229|0.75|0.6|1|0.75|0.6|5|0|308 NbS00052062g0009.1 protein AED:0.27 eAED:0.27 QI:0|0.81|0.91|1|0.81|0.91|12|450|571; (*GB) gi|225462023|ref|XP_002268040.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263435 [Vitis vinifera];; (*SWP) sp|P45816|SEC14_YARLI (e_value=2e-37) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT1G55690.2 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:20808622-20811831 REVERSE LENGTH=625;; (*ITAG) Solyc07g066090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64839709-64844491 transcript_region:SL2.40ch07:64839709..64844491+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7KN07_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00052062g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.85|1|0.66|0.85|7|710|333; (*GB) gi|225462037|ref|XP_002274648.1| (e_value=2e-179) PREDICTED: KH domain-containing protein At5g56140 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FKT4|QKIL2_ARATH (e_value=9e-149) KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1;; (*TAIR) AT5G56140.1 (e_value=7e-150) | Symbols: | RNA-binding KH domain-containing protein | chr5:22725462-22727932 FORWARD LENGTH=315;; (*ITAG) Solyc07g066070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64821769-64828228 transcript_region:SL2.40ch07:64821769..64828228+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6TF49_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00021503g0005.1 protein AED:0.13 eAED:0.13 QI:59|1|1|1|1|1|8|585|315; (*GB) gi|225464515|ref|XP_002270104.1| (e_value=9e-164) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=2e-150) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT4G23430.2 (e_value=1e-149) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12229171-12231493 FORWARD LENGTH=322;; (*ITAG) Solyc08g081200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61431924-61435328 transcript_region:SL2.40ch08:61431924..61435328+ go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LZK0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00038215g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|388491778|gb|AFK33955.1| (e_value=6e-31) unknown [Medicago truncatula];; (*TAIR) AT3G53140.1 (e_value=1e-29) | Symbols: | O-methyltransferase family protein | chr3:19695692-19697355 FORWARD LENGTH=359;; (*ITAG) Solyc10g085830.1.1 (e_value=2e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64223677-64226056 transcript_region:SL2.40ch10:64223677..64226056+ go_terms:GO:0008171 functional_description:"O-methyltransferase 1 (AHRD V1 ***- D7MTQ7_ARALY); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171 NbS00018567g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|4|0|201; (*GB) gi|255764587|gb|ACU33853.1| (e_value=2e-47) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=6e-24) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=5e-25) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00006310g0007.1 protein AED:0.13 eAED:0.13 QI:2|0.75|0.4|1|0.5|0.6|5|0|328; (*GB) gi|1170508|sp|P41381.1|IF4A8_TOBAC (e_value=5e-168) RecName: Full=Eukaryotic initiation factor 4A-8; Short=eIF-4A-8; AltName: Full=ATP-dependent RNA helicase eIF4A-8;; (*SWP) sp|P41381|IF4A8_TOBAC (e_value=2e-169) Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G54270.1 (e_value=4e-149) | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412;; (*ITAG) Solyc06g062800.2.1 (e_value=3e-167) genomic_reference:SL2.40ch06 gene_region:36013159-36016199 transcript_region:SL2.40ch06:36013159..36016199- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00006310g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|225442223|ref|XP_002277829.1| (e_value=0.0) PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=0.0) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=0.0) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc06g062810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36018591-36019889 transcript_region:SL2.40ch06:36018591..36019889+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00014315g0006.1 protein AED:0.14 eAED:0.17 QI:0|0.33|0|0.75|1|1|4|0|180; (*GB) gi|125987960|dbj|BAF47120.1| (e_value=3e-93) translationally controlled tumor protein like protein [Nicotiana tabacum];; (*SWP) sp|Q9XHL7|TCTP_TOBAC (e_value=1e-93) Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1;; (*TAIR) AT3G16640.1 (e_value=4e-72) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=3e-79) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00006037g0007.1 protein AED:0.29 eAED:0.29 QI:0|1|0.33|1|1|1|3|0|160; (*GB) gi|75153341|sp|Q8H9D2.1|NQR_SOLTU (e_value=2e-87) RecName: Full=NAD(P)H:quinone oxidoreductase; Short=NAD(P)H:QR;; (*SWP) sp|Q8H9D2|NQR_SOLTU (e_value=5e-89) NAD(P)H:quinone oxidoreductase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G27890.1 (e_value=3e-72) | Symbols: NQR | NADPH:quinone oxidoreductase | chr3:10350807-10351938 REVERSE LENGTH=196;; (*ITAG) Solyc01g096430.2.1 (e_value=5e-90) genomic_reference:SL2.40ch01 gene_region:79285952-79288255 transcript_region:SL2.40ch01:79285952..79288255- functional_description:"Predicted NADPH-dependent FMN reductase (AHRD V1 ***- Q0W0S0_UNCMA); contains Interpro domain(s) IPR005025 NADPH-dependent FMN reductase "; NbS00030677g0008.1 protein AED:0.05 eAED:0.11 QI:276|0.66|0.7|1|0.66|0.6|10|385|1143; (*GB) gi|255582930|ref|XP_002532236.1| (e_value=0.0) heavy metal cation transport atpase, putative [Ricinus communis];; (*SWP) sp|Q9SZW4|HMA2_ARATH (e_value=0.0) Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1;; (*TAIR) AT4G30110.1 (e_value=0.0) | Symbols: HMA2, ATHMA2 | heavy metal atpase 2 | chr4:14720253-14724577 REVERSE LENGTH=951;; (*ITAG) Solyc07g009130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4107448-4119376 transcript_region:SL2.40ch07:4107448..4119376+ go_terms:GO:0030001,GO:0016020,GO:0008152,GO:0016021 functional_description:"Potassium-transporting ATPase B chain (AHRD V1 *-*- ATKB_BACHK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0030001,GO:0016020,GO:0008152,GO:0016021 NbS00035196g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|255577155|ref|XP_002529461.1| (e_value=1e-33) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc10g006150.2.1 (e_value=1e-20) genomic_reference:SL2.40ch10 gene_region:879559-881917 transcript_region:SL2.40ch10:879559..881917+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026837g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|358249100|ref|NP_001239737.1| (e_value=9e-24) uncharacterized protein LOC100801557 [Glycine max];; (*ITAG) Solyc04g077620.1.1 (e_value=2e-53) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:60169868-60170242 transcript_region:SL2.40ch04:60169868..60170242+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027413g0002.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|356558221|ref|XP_003547406.1| (e_value=2e-28) PREDICTED: peroxidase 7-like [Glycine max];; (*SWP) sp|Q9SY33|PER7_ARATH (e_value=1e-17) Peroxidase 7 OS=Arabidopsis thaliana GN=PER7 PE=2 SV=1;; (*TAIR) AT1G30870.1 (e_value=9e-19) | Symbols: | Peroxidase superfamily protein | chr1:10991535-10992885 FORWARD LENGTH=349;; (*ITAG) Solyc02g082090.2.1 (e_value=3e-30) genomic_reference:SL2.40ch02 gene_region:40391015-40393235 transcript_region:SL2.40ch02:40391015..40393235- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q5W5I3_PICAB); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00027413g0007.1 protein AED:0.03 eAED:0.03 QI:140|0.9|0.90|1|0.6|0.54|11|97|281; (*GB) gi|359484277|ref|XP_002278210.2| (e_value=2e-100) PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera];; (*TAIR) AT5G09380.1 (e_value=7e-63) | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272;; (*ITAG) Solyc05g025650.2.1 (e_value=3e-99) genomic_reference:SL2.40ch05 gene_region:35397597-35400053 transcript_region:SL2.40ch05:35397597..35400053- go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 ***- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 "; GO:0005666 NbS00032906g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|15144505|gb|AAK84472.1| (e_value=8e-21) unknown [Solanum lycopersicum];; (*ITAG) Solyc11g010680.2.1 (e_value=2e-23) genomic_reference:SL2.40ch11 gene_region:3721153-3724626 transcript_region:SL2.40ch11:3721153..3724626+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016174g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.81|0.83|0.91|0.90|0.91|12|402|590; (*GB) gi|297738971|emb|CBI28216.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G33530.2 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr3:14085354-14093449 FORWARD LENGTH=1358;; (*ITAG) Solyc07g008080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2782240-2800373 transcript_region:SL2.40ch07:2782240..2800373- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 11 (AHRD V1 **-- WDR11_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00016174g0012.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|647; (*GB) gi|225445541|ref|XP_002285283.1| (e_value=0.0) PREDICTED: probable clathrin assembly protein At4g32285-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8S9J8|CAP1_ARATH (e_value=0.0) Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2;; (*TAIR) AT4G32285.2 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:15586003-15587910 FORWARD LENGTH=635;; (*ITAG) Solyc07g008060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2772065-2773909 transcript_region:SL2.40ch07:2772065..2773909+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00018976g0009.1 protein AED:0.01 eAED:0.01 QI:301|1|1|1|0|0.33|3|383|183; (*GB) gi|356510691|ref|XP_003524069.1| (e_value=4e-38) PREDICTED: uncharacterized protein LOC100802591 [Glycine max];; (*TAIR) AT5G02600.1 (e_value=4e-26) | Symbols: NAKR1 | Heavy metal transport/detoxification superfamily protein | chr5:585713-586855 REVERSE LENGTH=319;; (*ITAG) Solyc01g105000.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:85070623-85071931 transcript_region:SL2.40ch01:85070623..85071931+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- D3GC04_9ROSI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00018976g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.57|0.62|1|1|0.87|8|670|313; (*GB) gi|298204756|emb|CBI25254.3| (e_value=3e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q923W1|TGS1_MOUSE (e_value=1e-42) Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2;; (*TAIR) AT1G45231.2 (e_value=4e-59) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:17148019-17151194 REVERSE LENGTH=538;; (*ITAG) Solyc01g104990.2.1 (e_value=1e-115) genomic_reference:SL2.40ch01 gene_region:85064760-85069270 transcript_region:SL2.40ch01:85064760..85069270+ go_terms:GO:0005515,GO:0008990 functional_description:"Trimethylguanosine synthase (AHRD V1 **-- D0N6V7_PHYIN); contains Interpro domain(s) IPR019012 RNA cap guanine-N2 methyltransferase "; GO:0005515,GO:0008990 NbS00019980g0008.1 protein AED:0.31 eAED:0.32 QI:0|0.8|0.5|1|1|1|6|0|384; (*GB) gi|297805420|ref|XP_002870594.1| (e_value=3e-99) hypothetical protein ARALYDRAFT_493778 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P37707|B2_DAUCA (e_value=3e-99) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G42050.1 (e_value=1e-89) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:16815630-16816932 FORWARD LENGTH=349;; (*ITAG) Solyc08g082610.2.1 (e_value=3e-148) genomic_reference:SL2.40ch08 gene_region:62494812-62498149 transcript_region:SL2.40ch08:62494812..62498149- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00019980g0007.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|389; (*GB) gi|225426284|ref|XP_002266905.1| (e_value=1e-123) PREDICTED: uncharacterized protein LOC100247840 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=1e-26) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT1G64500.1 (e_value=2e-84) | Symbols: | Glutaredoxin family protein | chr1:23953270-23954376 FORWARD LENGTH=368;; (*ITAG) Solyc08g082590.2.1 (e_value=1e-176) genomic_reference:SL2.40ch08 gene_region:62486093-62488178 transcript_region:SL2.40ch08:62486093..62488178+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7KS91_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00019980g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.2|1|1|5|0|129; (*ITAG) Solyc00g022070.1.1 (e_value=1e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12007281-12007518 transcript_region:SL2.40ch00:12007281..12007518+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019980g0009.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|0|0|3|0|137; (*GB) gi|57639736|gb|AAW55712.1| (e_value=1e-25) ribosomal protein L16 [Lonicera sp. Bergthorsson 0301];; (*SWP) sp|Q04715|RM16_PETHY (e_value=4e-27) 60S ribosomal protein L16, mitochondrial OS=Petunia hybrida GN=RPL16 PE=2 SV=1;; (*ITAG) ATMG00080.1 (e_value=5e-26) | Symbols: RPL16 | ribosomal protein L16 | chrM:25076-25615 REVERSE LENGTH=179;; (*ITAG) Solyc09g015860.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:11298987-11299502 transcript_region:SL2.40ch09:11298987..11299502+ go_terms:GO:0003735,GO:0000048 functional_description:"50S ribosomal protein L16 (AHRD V1 ***- D7A960_STAND); contains Interpro domain(s) IPR000114 Ribosomal protein L16 "; GO:0003735,GO:0000048 NbS00029450g0015.1 protein AED:0.22 eAED:0.23 QI:225|0.84|0.85|1|0.94|0.95|20|0|1037; (*GB) gi|225447959|ref|XP_002267673.1| (e_value=0.0) PREDICTED: probable importin subunit beta-4 [Vitis vinifera];; (*SWP) sp|O60100|IMB4_SCHPO (e_value=2e-84) Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=2 SV=1;; (*TAIR) AT4G27640.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:13798013-13802976 REVERSE LENGTH=1048;; (*ITAG) Solyc01g104070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84302060-84310824 transcript_region:SL2.40ch01:84302060..84310824- go_terms:GO:0006886,GO:0005488 functional_description:"Importin beta (AHRD V1 **-- D2VK12_NAEGR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00029450g0019.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.71|1|0.83|0.85|7|0|284; (*GB) gi|147837083|emb|CAN77049.1| (e_value=9e-166) hypothetical protein VITISV_039116 [Vitis vinifera];; (*TAIR) AT1G71190.1 (e_value=3e-145) | Symbols: SAG18 | senescence associated gene 18 | chr1:26833597-26834982 REVERSE LENGTH=281;; (*ITAG) Solyc01g104080.2.1 (e_value=3e-179) genomic_reference:SL2.40ch01 gene_region:84314301-84318754 transcript_region:SL2.40ch01:84314301..84318754+ functional_description:"Hypothetical membrane spanning protein (AHRD V1 ***- A9KCV4_COXBN)"; NbS00029450g0013.1 protein AED:0.27 eAED:0.32 QI:0|0.42|0.37|0.75|0.57|0.62|8|0|478; (*GB) gi|225447996|ref|XP_002270229.1| (e_value=5e-134) PREDICTED: uncharacterized protein LOC100256702 [Vitis vinifera];; (*TAIR) AT4G36090.2 (e_value=9e-97) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:17078376-17080185 REVERSE LENGTH=452;; (*ITAG) Solyc01g104130.2.1 (e_value=1e-171) genomic_reference:SL2.40ch01 gene_region:84359045-84362365 transcript_region:SL2.40ch01:84359045..84362365+ go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family protein-like (AHRD V1 *--- Q5VPG6_ORYSJ); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00009306g0106.1 protein AED:0.00 eAED:0.00 QI:54|0.96|0.96|1|0.55|0.7|30|243|1190 NbS00009306g0121.1 protein AED:0.26 eAED:0.27 QI:4|0|0|1|0.25|0.4|5|0|370 NbS00009306g0102.1 protein AED:0.46 eAED:0.73 QI:0|-1|0|1|-1|1|1|0|87 NbS00006610g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.75|1|0.66|1|4|426|357; (*GB) gi|118489021|gb|ABK96318.1| (e_value=0.0) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|B9H5L9|LIAS_POPTR (e_value=0.0) Lipoyl synthase, mitochondrial OS=Populus trichocarpa GN=LIP1 PE=3 SV=1;; (*TAIR) AT2G20860.1 (e_value=5e-179) | Symbols: LIP1 | lipoic acid synthase 1 | chr2:8979636-8980983 FORWARD LENGTH=374;; (*ITAG) Solyc07g054540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60156209-60161037 transcript_region:SL2.40ch07:60156209..60161037+ go_terms:GO:0017140 functional_description:"Lipoyl synthase (AHRD V1 **** B8J937_ANAD2); contains Interpro domain(s) IPR003698 Lipoate synthase "; GO:0017140 NbS00035712g0004.1 protein AED:0.12 eAED:0.12 QI:173|1|0.5|1|1|1|2|0|83; (*GB) gi|359492377|ref|XP_003634404.1| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100854126 [Vitis vinifera];; (*TAIR) AT1G21722.1 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78922.1); Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:7628456-7629252 FORWARD LENGTH=233; NbS00056124g0006.1 protein AED:0.03 eAED:0.05 QI:56|0.5|0.33|1|0.5|0.66|3|221|231; (*GB) gi|22947842|gb|AAN07899.1| (e_value=2e-125) 20S proteasome alpha 6 subunit [Nicotiana benthamiana];; (*SWP) sp|P34066|PSA1A_ARATH (e_value=6e-113) Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3;; (*TAIR) AT5G42790.1 (e_value=5e-114) | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha subunit F1 | chr5:17159270-17160975 REVERSE LENGTH=278;; (*ITAG) Solyc04g080590.2.1 (e_value=1e-127) genomic_reference:SL2.40ch04 gene_region:62295025-62299348 transcript_region:SL2.40ch04:62295025..62299348- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q8H1Y2_NICBE); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00056124g0008.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|4|0|316; (*GB) gi|118482555|gb|ABK93198.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|O50039|OTC_ARATH (e_value=0.0) Ornithine carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=OTC PE=1 SV=2;; (*TAIR) AT1G75330.1 (e_value=0.0) | Symbols: OTC | ornithine carbamoyltransferase | chr1:28266457-28268383 REVERSE LENGTH=375;; (*ITAG) Solyc12g089210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62761961-62766160 transcript_region:SL2.40ch12:62761961..62766160- go_terms:GO:0009348,GO:0006520 functional_description:"Ornithine carbamoyltransferase (AHRD V1 ***- Q9SEX4_CANLI); contains Interpro domain(s) IPR002292 Ornithine carbamoyltransferase "; GO:0009348,GO:0006520 NbS00056124g0007.1 protein AED:0.47 eAED:0.50 QI:0|0|0.5|1|0|0|2|0|74 NbS00041122g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|123; (*ITAG) Solyc01g067970.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69400119-69400415 transcript_region:SL2.40ch01:69400119..69400415+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041122g0005.1 protein AED:0.33 eAED:0.33 QI:80|0.92|0.85|1|0.69|0.78|14|583|533; (*GB) gi|356565950|ref|XP_003551198.1| (e_value=3e-125) PREDICTED: ubiquitin-like-specific protease 1D-like [Glycine max];; (*SWP) sp|Q2PS26|ULP1D_ARATH (e_value=6e-115) Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1;; (*TAIR) AT1G60220.1 (e_value=5e-116) | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1:22208332-22211910 FORWARD LENGTH=584;; (*ITAG) Solyc05g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:440809-452678 transcript_region:SL2.40ch05:440809..452678+ go_terms:GO:0016929 functional_description:"Sentrin/SUMO-specific protease 15 (AHRD V1 *-** Q6IE03_MOUSE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbS00021482g0006.1 protein AED:0.02 eAED:0.02 QI:255|1|1|1|1|1|2|304|329; (*GB) gi|356569669|ref|XP_003553020.1| (e_value=9e-23) PREDICTED: FACT complex subunit SPT16-like [Glycine max];; (*SWP) sp|O82491|SPT16_ARATH (e_value=6e-22) FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1;; (*TAIR) AT4G10710.1 (e_value=4e-23) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc02g081590.2.1 (e_value=9e-58) genomic_reference:SL2.40ch02 gene_region:40060928-40063885 transcript_region:SL2.40ch02:40060928..40063885+ functional_description:"FACT complex subunit SPT16 (AHRD V1 *-*- SPT16_ARATH)"; NbS00021482g0007.1 protein AED:0.31 eAED:0.31 QI:80|1|0.5|1|1|1|2|0|261; (*GB) gi|255581373|ref|XP_002531495.1| (e_value=2e-122) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q55EX9|Y8948_DICDI (e_value=2e-29) Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2;; (*TAIR) AT2G41380.1 (e_value=3e-107) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17251981-17252886 FORWARD LENGTH=269;; (*ITAG) Solyc04g040180.2.1 (e_value=3e-156) genomic_reference:SL2.40ch04 gene_region:31093421-31095617 transcript_region:SL2.40ch04:31093421..31095617- go_terms:GO:0008757 functional_description:"S-adenosylmethionine-dependent methyltransferase (Fragment) (AHRD V1 **** B3VXJ7_POPTN); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0008757 NbS00021482g0010.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|75 NbS00010361g0011.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0.5|0.66|3|0|1139; (*GB) gi|359490050|ref|XP_002268598.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=0.0) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc03g093330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48015122-48019577 transcript_region:SL2.40ch03:48015122..48019577- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018274g0009.1 protein AED:0.28 eAED:0.28 QI:72|1|1|1|0.77|0.7|10|393|289; (*GB) gi|211906448|gb|ACJ11717.1| (e_value=2e-155) alpha-soluble NSF attachment protein [Gossypium hirsutum];; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=1e-156) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.1 (e_value=2e-132) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289;; (*ITAG) Solyc06g050770.2.1 (e_value=2e-175) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00018274g0007.1 protein AED:0.05 eAED:0.05 QI:27|0.8|0.66|1|0.6|0.83|6|195|435; (*GB) gi|225448601|ref|XP_002278665.1| (e_value=0.0) PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Vitis vinifera];; (*SWP) sp|Q6DEL1|S38A7_DANRE (e_value=4e-24) Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1;; (*TAIR) AT3G56200.1 (e_value=3e-149) | Symbols: | Transmembrane amino acid transporter family protein | chr3:20850087-20851779 FORWARD LENGTH=435;; (*ITAG) Solyc05g052300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61718647-61720798 transcript_region:SL2.40ch05:61718647..61720798- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9HYI5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00031649g0002.1 protein AED:0.14 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|130; (*GB) gi|78191065|gb|ABB29857.1| (e_value=7e-58) phytoene synthase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P37272|PSY_CAPAN (e_value=7e-36) Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1;; (*TAIR) AT5G17230.3 (e_value=4e-22) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=437;; (*ITAG) Solyc02g081330.2.1 (e_value=2e-49) genomic_reference:SL2.40ch02 gene_region:39913208-39917007 transcript_region:SL2.40ch02:39913208..39917007+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 2"; GO:0046905,GO:0016767 NbC25419789g0002.1 protein AED:0.36 eAED:0.36 QI:70|0.5|0.33|0.66|0.5|0.33|3|0|35 NbS00012013g0005.1 protein AED:0.14 eAED:0.20 QI:0|0.42|0.25|1|0.57|0.37|8|0|346; (*GB) gi|224134987|ref|XP_002327539.1| (e_value=0.0) cytochrome P450 probable 6-deoxoteasterone to 3-dehydro 6-deoxoteasterone or teasterone to 3-dehydro teasterone [Populus trichocarpa];; (*SWP) sp|Q94IA6|C90D1_ARATH (e_value=2e-155) 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=CYP90D1 PE=2 SV=1;; (*TAIR) AT3G13730.1 (e_value=1e-156) | Symbols: CYP90D1 | cytochrome P450, family 90, subfamily D, polypeptide 1 | chr3:4498330-4500836 REVERSE LENGTH=491;; (*ITAG) Solyc03g121510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63651958-63655007 transcript_region:SL2.40ch03:63651958..63655007- go_terms:GO:0016709,GO:0019825 functional_description:"Cytochrome P450"; GO:0016709,GO:0019825 NbC24487619g0001.1 protein AED:0.16 eAED:0.22 QI:25|-1|0|1|-1|0|1|0|73; (*GB) gi|224137910|ref|XP_002322682.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57880.1 (e_value=2e-41) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080420.1.1 (e_value=8e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61024539-61026866 transcript_region:SL2.40ch10:61024539..61026866+ functional_description:"Phosphoribosyltransferase (Fragment) (AHRD V1 *--- Q8LSY7_SEQSE); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00046233g0007.1 protein AED:0.01 eAED:0.01 QI:609|0.6|0.33|1|0.4|0.5|6|0|1177; (*GB) gi|225456583|ref|XP_002265665.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253543 [Vitis vinifera];; (*TAIR) AT1G74160.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). | chr1:27887164-27891151 FORWARD LENGTH=1025;; (*ITAG) Solyc03g115000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58905590-58910756 transcript_region:SL2.40ch03:58905590..58910756+ functional_description:"AT1G74160 protein (Fragment) (AHRD V1 *-*- B9DHP4_ARATH)"; NbS00014974g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|0.33|3|0|97; (*GB) gi|255556023|ref|XP_002519046.1| (e_value=2e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G21720.2 (e_value=1e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, male gametophyte, root, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage. | chr4:11543762-11544274 FORWARD LENGTH=107;; (*ITAG) Solyc10g009040.2.1 (e_value=2e-46) genomic_reference:SL2.40ch10 gene_region:3060366-3069973 transcript_region:SL2.40ch10:3060366..3069973- functional_description:"Unknown Protein (AHRD V1)"; NbS00014974g0009.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.5|0.33|3|305|364; (*GB) gi|350534880|ref|NP_001234676.1| (e_value=0.0) uncharacterized protein LOC543709 [Solanum lycopersicum];; (*SWP) sp|Q3ZBY7|DEGS1_BOVIN (e_value=1e-115) Sphingolipid delta(4)-desaturase DES1 OS=Bos taurus GN=DEGS1 PE=2 SV=1;; (*TAIR) AT4G04930.1 (e_value=0.0) | Symbols: DES-1-LIKE | fatty acid desaturase family protein | chr4:2509236-2510918 FORWARD LENGTH=332;; (*ITAG) Solyc10g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3056358-3059101 transcript_region:SL2.40ch10:3056358..3059101+ go_terms:GO:0042284 functional_description:"Sphingolipid delta 4 desaturase (AHRD V1 **** Q5AJX2_CANAL); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site "; GO:0042284 NbS00030682g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.4|1|0.25|0.6|5|60|627; (*GB) gi|359493531|ref|XP_002265350.2| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At1g59740-like [Vitis vinifera];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=0.0) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc11g042820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34285328-34288774 transcript_region:SL2.40ch11:34285328..34288774- go_terms:GO:0016020 functional_description:"Nitrate transporter (AHRD V1 ***- Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00030682g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.71|1|1|1|7|0|446; (*GB) gi|255544900|ref|XP_002513511.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9C809|B3GT8_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 8 OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1;; (*TAIR) AT1G33430.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:12124438-12126052 REVERSE LENGTH=395;; (*ITAG) Solyc11g042810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34272474-34274189 transcript_region:SL2.40ch11:34272474..34274189+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00009180g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|0.5|2|301|54 NbS00020871g0005.1 protein AED:0.21 eAED:0.37 QI:75|1|0.66|1|0|0|3|93|67; (*ITAG) Solyc09g008340.2.1 (e_value=5e-16) genomic_reference:SL2.40ch09 gene_region:1804838-1809925 transcript_region:SL2.40ch09:1804838..1809925+ functional_description:"F12E4.230-like protein (Fragment) (AHRD V1 ***- Q5YJQ6_HYAOR)"; NbS00004219g0021.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.57|1|0.83|0.85|7|0|463; (*GB) gi|354464671|gb|AER26531.1| (e_value=0.0) fructose 1,6 bisphosphate aldolase class 1 [Carica papaya];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc02g084440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42111042-42113547 transcript_region:SL2.40ch02:42111042..42113547- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q9SXX4_NICPA); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00004219g0027.1 protein AED:0.17 eAED:0.34 QI:0|0|0|1|0|0.5|2|0|94; (*GB) gi|356502938|ref|XP_003520271.1| (e_value=6e-29) PREDICTED: uncharacterized protein LOC100803419 [Glycine max];; (*TAIR) AT3G51140.1 (e_value=2e-29) | Symbols: | Protein of unknown function (DUF3353) | chr3:18998182-18999437 FORWARD LENGTH=278;; (*ITAG) Solyc02g062350.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:28534146-28538817 transcript_region:SL2.40ch02:28534146..28538817- go_terms:GO:0010181 functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; GO:0010181 NbS00004219g0026.1 protein AED:0.36 eAED:0.36 QI:265|0.78|0.8|0.93|0.78|0.8|15|0|397; (*GB) gi|359476646|ref|XP_003631875.1| (e_value=0.0) PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera];; (*SWP) sp|Q9SD33|U183_ARATH (e_value=0.0) UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2;; (*TAIR) AT3G51130.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 269 Blast hits to 265 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr3:18994219-18997180 FORWARD LENGTH=410;; (*ITAG) Solyc02g084500.2.1 (e_value=4e-154) genomic_reference:SL2.40ch02 gene_region:42167363-42173439 transcript_region:SL2.40ch02:42167363..42173439- functional_description:"UPF0183 domain protein (AHRD V1 **-- B8M4A7_TALSN); contains Interpro domain(s) IPR005373 Uncharacterised protein family UPF0183 "; NbS00004219g0033.1 protein AED:0.12 eAED:0.12 QI:0|0.4|0.33|0.83|0.8|0.66|6|24|326; (*GB) gi|255581396|ref|XP_002531506.1| (e_value=2e-151) Pectinesterase-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYZ3|PME53_ARATH (e_value=1e-119) Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1;; (*TAIR) AT5G19730.1 (e_value=8e-121) | Symbols: | Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383;; (*ITAG) Solyc02g075620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36355591-36357254 transcript_region:SL2.40ch02:36355591..36357254+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9SZT7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00004219g0031.1 protein AED:0.14 eAED:0.14 QI:182|0.7|0.81|1|0.5|0.54|11|58|519; (*GB) gi|225431211|ref|XP_002272351.1| (e_value=1e-122) PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q499U8|TMCO4_RAT (e_value=7e-13) Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1;; (*TAIR) AT4G36210.3 (e_value=3e-124) | Symbols: | Protein of unknown function (DUF726) | chr4:17130354-17134302 FORWARD LENGTH=672;; (*ITAG) Solyc03g033640.2.1 (e_value=5e-174) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00004219g0002.1 protein AED:0.20 eAED:0.22 QI:0|0.6|0.36|1|1|1|11|0|1605; (*GB) gi|356495372|ref|XP_003516552.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 44-like [Glycine max];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=0.0) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc02g084520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42188569-42192453 transcript_region:SL2.40ch02:42188569..42192453+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; GO:0008270 NbS00004219g0034.1 protein AED:0.22 eAED:0.22 QI:381|0.6|0.66|1|0|0.16|6|413|201; (*GB) gi|359476640|ref|XP_003631872.1| (e_value=1e-90) PREDICTED: probable salt tolerance-like protein At1g78600-like [Vitis vinifera];; (*SWP) sp|Q9SYM2|STHY_ARATH (e_value=6e-21) Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2;; (*TAIR) AT4G38960.1 (e_value=1e-65) | Symbols: | B-box type zinc finger family protein | chr4:18161576-18163045 FORWARD LENGTH=183;; (*ITAG) Solyc01g110370.2.1 (e_value=8e-76) genomic_reference:SL2.40ch01 gene_region:88848214-88852895 transcript_region:SL2.40ch01:88848214..88852895- go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 3 (AHRD V1 *--- COL3_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00030862g0001.1 protein AED:0.57 eAED:0.57 QI:0|-1|0|1|-1|1|1|0|87; (*GB) gi|3015520|gb|AAC98470.1| (e_value=7e-49) cytochrome oxidase subunit 1, partial (mitochondrion) [Betula papyrifera];; (*SWP) sp|P08743|COX1_OENBE (e_value=7e-50) Cytochrome c oxidase subunit 1 OS=Oenothera berteriana GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=1e-47) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc07g019510.2.1 (e_value=4e-49) genomic_reference:SL2.40ch07 gene_region:11854353-11856013 transcript_region:SL2.40ch07:11854353..11856013- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00041747g0015.1 protein AED:0.18 eAED:0.18 QI:332|0.69|0.70|0.95|0.69|0.75|24|0|1351; (*GB) gi|300827402|gb|ADK36643.1| (e_value=0.0) MAPKKKe [Nicotiana benthamiana];; (*SWP) sp|Q8T2I8|SEPA_DICDI (e_value=8e-101) Serine/threonine-protein kinase sepA OS=Dictyostelium discoideum GN=sepA PE=2 SV=1;; (*TAIR) AT3G13530.1 (e_value=0.0) | Symbols: MAPKKK7, MAP3KE1 | mitogen-activated protein kinase kinase kinase 7 | chr3:4411934-4419320 REVERSE LENGTH=1368;; (*ITAG) Solyc11g033270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:22947724-22983117 transcript_region:SL2.40ch11:22947724..22983117+ go_terms:GO:0016301 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 *-** B2W0T3_PYRTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00041747g0010.1 protein AED:0.09 eAED:0.11 QI:205|0.6|0.66|1|0.8|0.83|6|300|69; (*GB) gi|147794797|emb|CAN62586.1| (e_value=2e-31) hypothetical protein VITISV_000776 [Vitis vinifera];; (*SWP) sp|O88828|RPAB2_RAT (e_value=5e-20) DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus GN=Polr2f PE=1 SV=1;; (*TAIR) AT5G51940.1 (e_value=9e-32) | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144;; (*ITAG) Solyc09g010500.2.1 (e_value=1e-33) genomic_reference:SL2.40ch09 gene_region:3879837-3882611 transcript_region:SL2.40ch09:3879837..3882611+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit-like protein (AHRD V1 **** Q9FJ98_ARATH); contains Interpro domain(s) IPR006111 DNA-directed RNA polymerase, 14 to 18 kDa subunit "; GO:0003899 NbS00041747g0012.1 protein AED:0.32 eAED:0.32 QI:163|0.6|0.66|1|0.8|0.83|6|0|325; (*GB) gi|1170507|sp|P41380.1|IF4A3_NICPL (e_value=0.0) RecName: Full=Eukaryotic initiation factor 4A-3; Short=eIF-4A-3; AltName: Full=ATP-dependent RNA helicase eIF4A-3;; (*SWP) sp|P41380|IF4A3_NICPL (e_value=0.0) Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT3G19760.1 (e_value=5e-164) | Symbols: EIF4A-III | eukaryotic initiation factor 4A-III | chr3:6863790-6866242 FORWARD LENGTH=408;; (*ITAG) Solyc11g033280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:22986368-22991947 transcript_region:SL2.40ch11:22986368..22991947- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase FAL1 (AHRD V1 ***- A8NX16_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00003198g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|1|1|3|355|341; (*GB) gi|4760596|dbj|BAA77358.1| (e_value=3e-175) DNA-binding protein NtWRKY3 [Nicotiana tabacum];; (*SWP) sp|Q9SV15|WRK11_ARATH (e_value=5e-93) Probable WRKY transcription factor 11 OS=Arabidopsis thaliana GN=WRKY11 PE=2 SV=2;; (*TAIR) AT4G31550.2 (e_value=5e-95) | Symbols: WRKY11, ATWRKY11 | WRKY DNA-binding protein 11 | chr4:15290065-15291458 REVERSE LENGTH=324;; (*ITAG) Solyc12g096350.1.1 (e_value=4e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63654463-63655829 transcript_region:SL2.40ch12:63654463..63655829+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 11 (AHRD V1 ***- D7MB53_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00003198g0016.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|1|2|0|158; (*GB) gi|224105759|ref|XP_002333769.1| (e_value=4e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3SZ85|PTRD1_BOVIN (e_value=2e-22) Putative peptidyl-tRNA hydrolase PTRHD1 OS=Bos taurus GN=PTRHD1 PE=2 SV=2;; (*TAIR) AT5G10700.1 (e_value=3e-62) | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr5:3378053-3378867 REVERSE LENGTH=200;; (*ITAG) Solyc12g096390.1.1 (e_value=2e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63668048-63669780 transcript_region:SL2.40ch12:63668048..63669780+ go_terms:GO:0006412,GO:0006470 functional_description:"Protein C2orf79 homolog (AHRD V1 *--- D3PGK2_9MAXI); contains Interpro domain(s) IPR017867 Protein-tyrosine phosphatase, low molecular weight "; GO:0006412,GO:0006470 NbS00003198g0004.1 protein AED:0.38 eAED:0.38 QI:315|1|0.87|1|0.71|0.62|8|0|320; (*GB) gi|225464329|ref|XP_002271869.1| (e_value=7e-154) PREDICTED: putative UDP-sugar transporter DDB_G0278631 [Vitis vinifera];; (*SWP) sp|Q54YK1|Y8631_DICDI (e_value=8e-29) Putative UDP-sugar transporter DDB_G0278631 OS=Dictyostelium discoideum GN=DDB_G0278631 PE=3 SV=2;; (*TAIR) AT4G31600.1 (e_value=8e-154) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr4:15315232-15316909 REVERSE LENGTH=323;; (*ITAG) Solyc12g096340.1.1 (e_value=1e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63644637-63647810 transcript_region:SL2.40ch12:63644637..63647810+ functional_description:"UDP-sugar transporter-like protein (AHRD V1 ***- A8PFD6_BRUMA); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00003198g0017.1 protein AED:0.14 eAED:0.14 QI:0|0.25|0|1|1|0.8|5|0|537; (*GB) gi|225444009|ref|XP_002281463.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00003198g0006.1 protein AED:0.18 eAED:0.18 QI:63|0|0.5|1|0|0.5|2|0|674; (*GB) gi|255548592|ref|XP_002515352.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=3e-15) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT4G31540.1 (e_value=0.0) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc12g096370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63661011-63663035 transcript_region:SL2.40ch12:63661011..63663035- go_terms:GO:0000145 functional_description:"Exocyst complex component EXO70 (AHRD V1 *--- EXO70_YEAST); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00003198g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|431; (*GB) gi|357466501|ref|XP_003603535.1| (e_value=2e-11) hypothetical protein MTR_3g108830 [Medicago truncatula];; (*ITAG) Solyc12g096410.1.1 (e_value=5e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:63672113-63673148 transcript_region:SL2.40ch12:63672113..63673148- functional_description:"Unknown Protein (AHRD V1)"; NbS00014668g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|1|1|5|0|388; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=0.0) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=8e-139) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00029684g0023.1 protein AED:0.00 eAED:0.00 QI:417|1|1|1|1|1|2|266|379; (*GB) gi|359486249|ref|XP_002263275.2| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100257434 [Vitis vinifera];; (*TAIR) AT5G49920.1 (e_value=1e-52) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:20306637-20307583 REVERSE LENGTH=288;; (*ITAG) Solyc04g076820.1.1 (e_value=9e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:59289748-59291172 transcript_region:SL2.40ch04:59289748..59291172- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7MPG4_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00029684g0020.1 protein AED:0.17 eAED:0.17 QI:285|1|1|1|0|0|2|241|147; (*GB) gi|225465177|ref|XP_002264097.1| (e_value=4e-62) PREDICTED: uncharacterized protein LOC100255705 [Vitis vinifera];; (*TAIR) AT1G09812.1 (e_value=5e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3187817-3188580 FORWARD LENGTH=128;; (*ITAG) Solyc01g103500.2.1 (e_value=4e-58) genomic_reference:SL2.40ch01 gene_region:83854696-83855634 transcript_region:SL2.40ch01:83854696..83855634- functional_description:"Unknown Protein (AHRD V1)"; NbS00029684g0021.1 protein AED:0.23 eAED:0.23 QI:236|0.90|0.91|1|0.90|0.83|12|232|530; (*GB) gi|147770771|emb|CAN60953.1| (e_value=0.0) hypothetical protein VITISV_008875 [Vitis vinifera];; (*SWP) sp|Q93Y22|COPD_ARATH (e_value=0.0) Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2;; (*TAIR) AT5G05010.2 (e_value=0.0) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr5:1477137-1479872 FORWARD LENGTH=527;; (*ITAG) Solyc01g103480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83833887-83841434 transcript_region:SL2.40ch01:83833887..83841434- go_terms:GO:0005515 functional_description:"Coatomer subunit delta (AHRD V1 ***- B6TDR8_MAIZE); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0005515 NbS00029684g0004.1 protein AED:0.40 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|197; (*ITAG) Solyc01g103470.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:83830816-83831855 transcript_region:SL2.40ch01:83830816..83831855- functional_description:"Unknown Protein (AHRD V1)"; NbS00029684g0026.1 protein AED:0.02 eAED:0.02 QI:225|1|0.87|1|1|1|8|0|707; (*GB) gi|166919372|gb|ABZ04081.1| (e_value=0.0) chloroplast heat shock protein 70-2 [Ipomoea nil];; (*SWP) sp|Q02028|HSP7S_PEA (e_value=0.0) Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1;; (*TAIR) AT4G24280.1 (e_value=0.0) | Symbols: cpHsc70-1 | chloroplast heat shock protein 70-1 | chr4:12590094-12593437 FORWARD LENGTH=718;; (*ITAG) Solyc01g103450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83821528-83826037 transcript_region:SL2.40ch01:83821528..83826037+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- Q1SKX2_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00029684g0032.1 protein AED:0.20 eAED:0.21 QI:624|0.55|0.7|1|0.66|0.6|10|486|599; (*GB) gi|225465179|ref|XP_002263223.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262558 [Vitis vinifera];; (*SWP) sp|Q9STW5|MACP2_ARATH (e_value=0.0) MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1;; (*TAIR) AT4G24290.2 (e_value=0.0) | Symbols: | MAC/Perforin domain-containing protein | chr4:12594856-12597815 FORWARD LENGTH=606;; (*ITAG) Solyc01g103490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83848324-83854531 transcript_region:SL2.40ch01:83848324..83854531+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA21_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00029684g0006.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|255573515|ref|XP_002527682.1| (e_value=3e-68) 3-5 exonuclease, putative [Ricinus communis];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=2e-24) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT2G36110.1 (e_value=3e-28) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:15161877-15162596 FORWARD LENGTH=239;; (*ITAG) Solyc01g103460.2.1 (e_value=3e-96) genomic_reference:SL2.40ch01 gene_region:83828730-83829803 transcript_region:SL2.40ch01:83828730..83829803+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00029684g0011.1 protein AED:0.82 eAED:0.83 QI:0|0|0|0.4|1|1|5|0|254 NbS00013439g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.8|0.66|6|341|220; (*GB) gi|83284001|gb|ABC01908.1| (e_value=2e-115) putative 24 kDa seed maturation protein-like protein [Solanum tuberosum];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=2e-78) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=2e-79) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc03g007740.2.1 (e_value=1e-117) genomic_reference:SL2.40ch03 gene_region:2271270-2273817 transcript_region:SL2.40ch03:2271270..2273817+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00003159g0010.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|3|0|675; (*GB) gi|302142412|emb|CBI19615.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=0.0) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT2G23450.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:9988926-9991244 REVERSE LENGTH=708;; (*ITAG) Solyc04g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61678551-61682784 transcript_region:SL2.40ch04:61678551..61682784+ go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00003159g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|3|0|535; (*GB) gi|20160362|emb|CAD29735.1| (e_value=0.0) allene oxide synthase [Solanum tuberosum];; (*SWP) sp|Q96242|CP74A_ARATH (e_value=0.0) Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3;; (*TAIR) AT5G42650.1 (e_value=0.0) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc04g079730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61687174-61688778 transcript_region:SL2.40ch04:61687174..61688778- go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00008338g0003.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|152; (*ITAG) Solyc07g007150.1.1 (e_value=7e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1914745-1915161 transcript_region:SL2.40ch07:1914745..1915161- functional_description:"Unknown Protein (AHRD V1)"; NbS00020094g0007.1 protein AED:0.06 eAED:0.10 QI:0|0.37|0|1|0.5|0.44|9|0|938; (*GB) gi|147867379|emb|CAN81180.1| (e_value=0.0) hypothetical protein VITISV_012787 [Vitis vinifera];; (*SWP) sp|Q6YUU5|MDR_ORYSJ (e_value=0.0) Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1;; (*TAIR) AT3G28390.1 (e_value=0.0) | Symbols: PGP18 | P-glycoprotein 18 | chr3:10629425-10633967 REVERSE LENGTH=1225;; (*ITAG) Solyc05g013890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:7340410-7343439 transcript_region:SL2.40ch05:7340410..7343439- go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00004739g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|251; (*GB) gi|100801744|emb|CAK24966.1| (e_value=2e-175) chlorophyll a/b binding protein [Solanum tuberosum];; (*SWP) sp|Q9SQL2|CB24_PEA (e_value=7e-164) Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1;; (*TAIR) AT3G47470.1 (e_value=5e-164) | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251;; (*ITAG) Solyc03g115900.2.1 (e_value=7e-179) genomic_reference:SL2.40ch03 gene_region:59544549-59546188 transcript_region:SL2.40ch03:59544549..59546188+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein P4, chloroplastic (AHRD V1 ***- CB24_PEA); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00004739g0006.1 protein AED:0.00 eAED:0.00 QI:88|1|1|1|0|0.5|2|220|261; (*GB) gi|356560194|ref|XP_003548379.1| (e_value=5e-64) PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max];; (*SWP) sp|Q54CX4|Y5521_DICDI (e_value=9e-12) Uncharacterized protein DDB_G0292642 OS=Dictyostelium discoideum GN=DDB_G0292642 PE=4 SV=2;; (*TAIR) AT3G14250.1 (e_value=1e-49) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc03g115920.2.1 (e_value=2e-113) genomic_reference:SL2.40ch03 gene_region:59553261-59554223 transcript_region:SL2.40ch03:59553261..59554223- go_terms:GO:0008270 functional_description:"Zinc finger protein-like protein (AHRD V1 **-- Q1PEQ5_ARATH); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00040086g0004.1 protein AED:0.25 eAED:0.25 QI:10|0|0|1|0|0.25|4|0|333; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-26) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00040086g0005.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|113; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021743g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.61|0.76|1|1|13|0|361; (*GB) gi|380853844|gb|AFE88229.1| (e_value=0.0) acetyl-CoA carboxylase [Nicotiana tabacum];; (*SWP) sp|B9HBA8|ACCC1_POPTR (e_value=0.0) Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1;; (*TAIR) AT5G35360.1 (e_value=0.0) | Symbols: CAC2 | acetyl Co-enzyme a carboxylase biotin carboxylase subunit | chr5:13584300-13588268 FORWARD LENGTH=537;; (*ITAG) Solyc01g008330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2451880-2461756 transcript_region:SL2.40ch01:2451880..2461756+ go_terms:GO:0008152,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase biotin carboxylase (AHRD V1 ***- B4VQU4_9CYAN); contains Interpro domain(s) IPR004549 Acetyl-CoA carboxylase, biotin carboxylase "; GO:0008152,GO:0005524,GO:0016874 NbS00024591g0002.1 protein AED:0.29 eAED:0.37 QI:0|0|0|1|1|1|2|0|78; (*ITAG) Solyc07g055040.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60503990-60504391 transcript_region:SL2.40ch07:60503990..60504391+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00005080g0005.1 protein AED:0.03 eAED:0.03 QI:84|1|1|1|1|1|2|152|495; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q42600|C84A1_ARATH (e_value=8e-125) Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1;; (*TAIR) AT4G36220.1 (e_value=6e-126) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc04g054260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51369319-51371436 transcript_region:SL2.40ch04:51369319..51371436- go_terms:GO:0019825,GO:0046424 functional_description:"Cytochrome P450"; GO:0019825,GO:0046424 NbS00007958g0012.1 protein AED:0.00 eAED:0.00 QI:483|1|1|1|0|0|5|93|142; (*GB) gi|297734118|emb|CBI15365.3| (e_value=1e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g114670.2.1 (e_value=3e-52) genomic_reference:SL2.40ch03 gene_region:58632193-58636537 transcript_region:SL2.40ch03:58632193..58636537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007958g0015.1 protein AED:0.12 eAED:0.12 QI:49|1|0.5|1|0|0|2|255|35 NbS00007958g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|357130236|ref|XP_003566756.1| (e_value=1e-17) PREDICTED: probable splicing factor 3A subunit 1-like [Brachypodium distachyon];; (*TAIR) AT1G14640.1 (e_value=7e-13) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr1:5023656-5025955 FORWARD LENGTH=735;; (*ITAG) Solyc02g081960.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:40291932-40295230 transcript_region:SL2.40ch02:40291932..40295230+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbS00007958g0004.1 protein AED:0.00 eAED:0.00 QI:0|0|0.5|1|0|0.5|2|569|437; (*GB) gi|297734117|emb|CBI15364.3| (e_value=6e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=2e-30) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT5G08139.1 (e_value=3e-49) | Symbols: | RING/U-box superfamily protein | chr5:2616487-2617617 FORWARD LENGTH=376;; (*ITAG) Solyc03g114680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58636757-58640560 transcript_region:SL2.40ch03:58636757..58640560- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_BOVIN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007958g0011.1 protein AED:0.07 eAED:0.07 QI:151|0.83|0.76|1|0.66|0.76|13|0|991; (*GB) gi|359491386|ref|XP_002273412.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1-like [Vitis vinifera];; (*SWP) sp|P59328|WDHD1_MOUSE (e_value=2e-72) WD repeat and HMG-box DNA-binding protein 1 OS=Mus musculus GN=Wdhd1 PE=1 SV=2;; (*TAIR) AT3G42660.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:14751280-14755701 FORWARD LENGTH=953;; (*ITAG) Solyc03g114690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58641516-58647305 transcript_region:SL2.40ch03:58641516..58647305- go_terms:GO:0000166 functional_description:"Wd-40 repeat-containing protein (AHRD V1 *--- B8C836_THAPS); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00007958g0014.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|4|0|437; (*GB) gi|225423737|ref|XP_002278479.1| (e_value=2e-177) PREDICTED: probable splicing factor 3A subunit 1-like [Vitis vinifera];; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=2e-141) Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2;; (*TAIR) AT1G14650.2 (e_value=1e-142) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | chr1:5028077-5030520 FORWARD LENGTH=785;; (*ITAG) Solyc04g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:451734-456916 transcript_region:SL2.40ch04:451734..456916+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbS00007958g0102.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|481 NbS00024494g0001.1 protein AED:0.29 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|122; (*GB) gi|20149046|gb|AAM12778.1| (e_value=2e-27) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=5e-22) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18030.1 (e_value=4e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5968527-5968793 FORWARD LENGTH=88;; (*ITAG) Solyc11g011720.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4710076-4710354 transcript_region:SL2.40ch11:4710076..4710354+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00024494g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-29) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29510.1 (e_value=8e-25) | Symbols: SAUR68 | SAUR-like auxin-responsive protein family | chr1:10322683-10323114 FORWARD LENGTH=143;; (*ITAG) Solyc10g052530.1.1 (e_value=3e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48389880-48390317 transcript_region:SL2.40ch10:48389880..48390317- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00058192g0001.1 protein AED:0.48 eAED:0.48 QI:0|0.5|0.4|0.8|1|1|5|0|122; (*GB) gi|219886635|gb|ACL53692.1| (e_value=1e-49) unknown [Zea mays];; (*SWP) sp|Q5QM99|RL37A_ORYSJ (e_value=1e-49) 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=4e-50) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc08g077710.2.1 (e_value=2e-53) genomic_reference:SL2.40ch08 gene_region:58783853-58784750 transcript_region:SL2.40ch08:58783853..58784750+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0003735,GO:0005515 NbS00058192g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|62 NbS00006504g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.9|1|0.88|1|10|0|1226; (*GB) gi|359482803|ref|XP_003632843.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 4-like [Vitis vinifera];; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2;; (*TAIR) AT1G17500.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023201 FORWARD LENGTH=1216;; (*ITAG) Solyc06g062780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35995146-36001096 transcript_region:SL2.40ch06:35995146..36001096+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00044506g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|248; (*GB) gi|255580799|ref|XP_002531220.1| (e_value=3e-96) Major pollen allergen Ory s 1 precursor, putative [Ricinus communis];; (*SWP) sp|O23547|EXLB1_ARATH (e_value=8e-90) Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=6e-91) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc06g060970.1.1 (e_value=1e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35338113-35339942 transcript_region:SL2.40ch06:35338113..35339942- go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WRS3_ARATH); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00044506g0001.1 protein AED:0.07 eAED:0.07 QI:256|1|1|1|0.87|0.77|9|261|213; (*GB) gi|225466649|ref|XP_002273174.1| (e_value=2e-139) PREDICTED: calcineurin B-like protein 01 [Vitis vinifera];; (*SWP) sp|O81445|CNBL1_ARATH (e_value=2e-129) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.1 (e_value=2e-130) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g077770.2.1 (e_value=3e-138) genomic_reference:SL2.40ch08 gene_region:58838680-58845331 transcript_region:SL2.40ch08:58838680..58845331- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00059165g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.42|0.12|1|0.42|0.25|8|0|290; (*GB) gi|224112235|ref|XP_002316127.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18720.1 (e_value=2e-57) | Symbols: | Protein of unknown function (DUF962) | chr1:6458020-6459658 REVERSE LENGTH=206;; (*ITAG) Solyc03g115860.2.1 (e_value=3e-69) genomic_reference:SL2.40ch03 gene_region:59514994-59518387 transcript_region:SL2.40ch03:59514994..59518387- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum membrane protein YGL010W (AHRD V1 **-- C1BUF1_9MAXI); contains Interpro domain(s) IPR009305 Protein of unknown function DUF962 "; GO:0005515 NbS00059165g0006.1 protein AED:0.19 eAED:0.19 QI:72|1|0.8|1|1|1|5|125|157; (*GB) gi|359497630|ref|XP_003635591.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100854331 [Vitis vinifera];; (*TAIR) AT1G18730.4 (e_value=2e-43) | Symbols: NDF6 | NDH dependent flow 6 | chr1:6460625-6461464 FORWARD LENGTH=161;; (*ITAG) Solyc12g036170.1.1 (e_value=1e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:29752815-29754223 transcript_region:SL2.40ch12:29752815..29754223- functional_description:"Unknown Protein (AHRD V1)"; NbS00015700g0007.1 protein AED:0.14 eAED:0.14 QI:236|0.85|0.87|1|0.71|0.62|8|0|512; (*GB) gi|225456437|ref|XP_002280645.1| (e_value=0.0) PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Vitis vinifera];; (*SWP) sp|Q980A0|APGM_SULSO (e_value=3e-75) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=apgM PE=3 SV=1;; (*TAIR) AT3G30841.1 (e_value=0.0) | Symbols: | Cofactor-independent phosphoglycerate mutase | chr3:12591595-12593401 FORWARD LENGTH=495;; (*ITAG) Solyc06g005370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:381039-384707 transcript_region:SL2.40ch06:381039..384707+ go_terms:GO:0046872,GO:0008152 functional_description:"Predicted 2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 ***- D9PU88_METTM); contains Interpro domain(s) IPR019304 2,3-bisphosphoglycerate-independent phosphoglycerate mutase "; GO:0046872,GO:0008152 NbS00007164g0001.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|4|0|161 NbS00042758g0013.1 protein AED:0.25 eAED:0.27 QI:606|0.72|0.58|1|0.45|0.58|12|0|923; (*GB) gi|255556564|ref|XP_002519316.1| (e_value=0.0) Squamosa promoter-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=3e-156) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=2e-157) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc05g053240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62525730-62535803 transcript_region:SL2.40ch05:62525730..62535803+ go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00042758g0014.1 protein AED:0.19 eAED:0.26 QI:0|0|0|1|0|0|3|0|371; (*GB) gi|145049666|gb|ABP35525.1| (e_value=0.0) S-adenosyl-L-methionine synthetase [Ipomoea batatas];; (*SWP) sp|Q9AT56|METK1_ELAUM (e_value=0.0) S-adenosylmethionine synthase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1;; (*TAIR) AT1G02500.2 (e_value=0.0) | Symbols: SAM1, SAM-1, MAT1, AtSAM1 | S-adenosylmethionine synthetase 1 | chr1:519037-520218 FORWARD LENGTH=393;; (*ITAG) Solyc01g101060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00008868g0011.1 protein AED:0.27 eAED:0.29 QI:0|0.66|0.42|1|0.83|0.85|7|0|247; (*GB) gi|157042753|gb|ABV02028.1| (e_value=1e-172) mevalonate diphosphate decarboxylase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P53602|MVD1_HUMAN (e_value=1e-68) Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1;; (*TAIR) AT3G54250.1 (e_value=1e-138) | Symbols: | GHMP kinase family protein | chr3:20082468-20084688 REVERSE LENGTH=419;; (*ITAG) Solyc04g009650.2.1 (e_value=4e-163) genomic_reference:SL2.40ch04 gene_region:3019293-3024735 transcript_region:SL2.40ch04:3019293..3024735- go_terms:GO:0004163,GO:0042803 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 **** Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0004163,GO:0042803 NbS00008868g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|225464142|ref|XP_002265566.1| (e_value=2e-145) PREDICTED: protein YIPF5 [Vitis vinifera];; (*SWP) sp|Q66KA5|YIPF5_XENTR (e_value=1e-33) Protein YIPF5 OS=Xenopus tropicalis GN=yipf5 PE=2 SV=1;; (*TAIR) AT2G36300.1 (e_value=2e-102) | Symbols: | Integral membrane Yip1 family protein | chr2:15213362-15214129 REVERSE LENGTH=255;; (*ITAG) Solyc05g055300.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64139793-64140548 transcript_region:SL2.40ch05:64139793..64140548- go_terms:GO:0017137 functional_description:"YIPF5 (AHRD V1 **-- C0H9W5_SALSA); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00008868g0010.1 protein AED:0.22 eAED:0.22 QI:95|1|0.8|1|0.75|0.6|5|379|436; (*GB) gi|225464148|ref|XP_002266006.1| (e_value=9e-156) PREDICTED: uncharacterized protein LOC100256822 isoform 1 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=3e-140) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc11g007040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1521934-1525575 transcript_region:SL2.40ch11:1521934..1525575- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00028185g0011.1 protein AED:0.26 eAED:0.26 QI:129|1|1|1|1|0.85|7|297|500; (*GB) gi|126363774|dbj|BAF47751.1| (e_value=0.0) multi antimicrobial extrusion family protein [Nicotiana tabacum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-139) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g080480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39263626-39266662 transcript_region:SL2.40ch02:39263626..39266662- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_EDWI9); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00028185g0010.1 protein AED:0.10 eAED:0.10 QI:79|0.75|0.8|1|1|1|5|105|296; (*GB) gi|1708423|sp|P52579.1|IFRH_TOBAC (e_value=0.0) RecName: Full=Isoflavone reductase homolog A622;; (*SWP) sp|P52579|IFRH_TOBAC (e_value=0.0) Isoflavone reductase homolog A622 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G39230.1 (e_value=4e-132) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr4:18266024-18267604 REVERSE LENGTH=308;; (*ITAG) Solyc03g033970.1.1 (e_value=2e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9932631-9936269 transcript_region:SL2.40ch03:9932631..9936269- go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase 3 (AHRD V1 **** B9HRL7_POPTR); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00018229g0003.1 protein AED:0.45 eAED:0.46 QI:0|0|0.33|0.66|1|1|3|0|81; (*ITAG) Solyc08g081130.2.1 (e_value=3e-24) genomic_reference:SL2.40ch08 gene_region:61380523-61384815 transcript_region:SL2.40ch08:61380523..61384815+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010864g0008.1 protein AED:0.27 eAED:0.28 QI:2180|0.62|0.69|0.89|0.77|0.76|46|660|835; (*GB) gi|297738766|emb|CBI28011.3| (e_value=5e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8N9|GOGC1_ARATH (e_value=5e-110) Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2;; (*TAIR) AT2G19950.2 (e_value=1e-112) | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8621219 REVERSE LENGTH=710;; (*ITAG) Solyc12g008390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1822758-1835129 transcript_region:SL2.40ch12:1822758..1835129+ functional_description:"Golgin candidate 1 (AHRD V1 ***- GOGC1_ARATH)"; NbS00010864g0006.1 protein AED:0.08 eAED:0.56 QI:0|0|0|1|1|1|2|0|95 NbS00006669g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|60; (*GB) gi|45738252|gb|AAS75891.1| (e_value=7e-19) auxin-repressed protein [Solanum virginianum];; (*TAIR) AT2G33830.1 (e_value=5e-19) | Symbols: | Dormancy/auxin associated family protein | chr2:14309768-14310286 REVERSE LENGTH=106;; (*ITAG) Solyc03g006360.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:957564-959986 transcript_region:SL2.40ch03:957564..959986+ functional_description:"Auxin-repressed protein (AHRD V1 ***- Q6PXE1_9SOLN); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00006669g0002.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|243; (*ITAG) Solyc03g006350.2.1 (e_value=1e-81) genomic_reference:SL2.40ch03 gene_region:943458-946178 transcript_region:SL2.40ch03:943458..946178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 27 (AHRD V1 *-*- C3H27_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00028219g0011.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.4|1|0.5|0.4|5|245|294; (*GB) gi|356500433|ref|XP_003519036.1| (e_value=1e-173) PREDICTED: solute carrier family 35 member B1-like [Glycine max];; (*SWP) sp|Q9M9S6|UTR3_ARATH (e_value=6e-169) UDP-galactose/UDP-glucose transporter 3 OS=Arabidopsis thaliana GN=UTR3 PE=1 SV=1;; (*TAIR) AT1G14360.1 (e_value=4e-170) | Symbols: ATUTR3, UTR3 | UDP-galactose transporter 3 | chr1:4911362-4913029 REVERSE LENGTH=331;; (*ITAG) Solyc01g010650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5655290-5660901 transcript_region:SL2.40ch01:5655290..5660901- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 3 (AHRD V1 **** D7KBJ4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00028219g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|215; (*GB) gi|357486707|ref|XP_003613641.1| (e_value=1e-76) Putativ eribonuclease P [Medicago truncatula];; (*TAIR) AT1G14345.1 (e_value=3e-77) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:4899176-4899766 FORWARD LENGTH=196;; (*ITAG) Solyc01g010640.2.1 (e_value=6e-97) genomic_reference:SL2.40ch01 gene_region:5646161-5647113 transcript_region:SL2.40ch01:5646161..5647113+ go_terms:GO:0055114 functional_description:"Uncharacterized membrane protein (AHRD V1 **-- Q46JN3_PROMT); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00028219g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.57|0.85|0.83|0.85|7|363|425; (*GB) gi|48209875|gb|AAT40481.1| (e_value=0.0) putative protein kinase [Solanum demissum];; (*SWP) sp|O49840|APK2B_ARATH (e_value=0.0) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=0.0) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc01g010660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5673997-5680626 transcript_region:SL2.40ch01:5673997..5680626+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00037525g0006.1 protein AED:0.25 eAED:0.25 QI:163|1|1|1|0.6|0.5|6|528|195; (*GB) gi|255547596|ref|XP_002514855.1| (e_value=3e-93) Tyrosine-protein phosphatase SIW14, putative [Ricinus communis];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=3e-67) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT5G16480.1 (e_value=1e-87) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr5:5381334-5382618 REVERSE LENGTH=204;; (*ITAG) Solyc04g056340.2.1 (e_value=1e-118) genomic_reference:SL2.40ch04 gene_region:53237131-53239123 transcript_region:SL2.40ch04:53237131..53239123+ go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00002527g0003.1 protein AED:0.22 eAED:0.22 QI:145|1|1|1|0.5|0.33|3|1550|107; (*GB) gi|225432031|ref|XP_002280085.1| (e_value=3e-34) PREDICTED: transmembrane protein 93-like [Vitis vinifera];; (*TAIR) AT5G49540.1 (e_value=2e-30) | Symbols: | Rab5-interacting family protein | chr5:20104804-20105609 REVERSE LENGTH=114;; (*ITAG) Solyc01g058280.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:58787500-58791252 transcript_region:SL2.40ch01:58787500..58791252- functional_description:"Transmembrane protein 93 (AHRD V1 ***- B0WGS0_CULQU); contains Interpro domain(s) IPR008504 Protein of unknown function DUF786 "; NbS00011015g0027.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0|0|3|0|318; (*GB) gi|158564570|gb|ABW74473.1| (e_value=1e-104) CXE carboxylesterase [Paeonia suffruticosa];; (*SWP) sp|Q9SMN0|CXE12_ARATH (e_value=3e-79) Probable carboxylesterase 12 OS=Arabidopsis thaliana GN=CXE12 PE=2 SV=1;; (*TAIR) AT3G48690.1 (e_value=2e-80) | Symbols: ATCXE12, CXE12 | alpha/beta-Hydrolases superfamily protein | chr3:18037186-18038160 REVERSE LENGTH=324;; (*ITAG) Solyc01g108530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87589549-87591336 transcript_region:SL2.40ch01:87589549..87591336+ go_terms:GO:0004091 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SALPB); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00011015g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|353; (*GB) gi|147834295|emb|CAN61111.1| (e_value=1e-101) hypothetical protein VITISV_006466 [Vitis vinifera];; (*SWP) sp|Q9LMA7|CXE1_ARATH (e_value=1e-74) Probable carboxylesterase 1 OS=Arabidopsis thaliana GN=CXE1 PE=2 SV=1;; (*TAIR) AT1G19190.1 (e_value=9e-76) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:6623876-6624832 FORWARD LENGTH=318;; (*ITAG) Solyc01g108520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87586592-87587539 transcript_region:SL2.40ch01:87586592..87587539+ go_terms:GO:0004091 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOL6); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00011015g0005.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|316; (*GB) gi|224143293|ref|XP_002336023.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX78|CXE2_ARATH (e_value=3e-99) Probable carboxylesterase 2 OS=Arabidopsis thaliana GN=CXE2 PE=2 SV=1;; (*TAIR) AT1G47480.1 (e_value=3e-100) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314;; (*ITAG) Solyc01g108580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87599060-87600395 transcript_region:SL2.40ch01:87599060..87600395+ go_terms:GO:0004806 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004806 NbS00011015g0025.1 protein AED:0.18 eAED:0.18 QI:77|1|1|1|0.94|0.94|19|316|1130; (*GB) gi|225428772|ref|XP_002282024.1| (e_value=0.0) PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LJL3|PREP1_ARATH (e_value=0.0) Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2;; (*TAIR) AT3G19170.1 (e_value=0.0) | Symbols: ATPREP1, ATZNMP, PREP1 | presequence protease 1 | chr3:6625578-6631874 REVERSE LENGTH=1080;; (*ITAG) Solyc01g108600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87613555-87626715 transcript_region:SL2.40ch01:87613555..87626715+ go_terms:GO:0004222 functional_description:"Presequence protease, mitochondrial (AHRD V1 **-- PREP_DANRE); contains Interpro domain(s) IPR013578 Peptidase M16C associated "; GO:0004222 NbS00011015g0026.1 protein AED:0.22 eAED:0.27 QI:412|0|0.14|0.85|0.5|0.42|7|0|335; (*GB) gi|225426777|ref|XP_002282782.1| (e_value=9e-96) PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera];; (*SWP) sp|Q3UFY0|RRP36_MOUSE (e_value=3e-31) Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=2 SV=1;; (*TAIR) AT1G12650.4 (e_value=2e-60) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=4e-119) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00014049g0001.1 protein AED:0.04 eAED:0.06 QI:0|1|0.9|1|0.88|0.8|10|357|893; (*GB) gi|255574576|ref|XP_002528199.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4HQD4|HSP7P_ARATH (e_value=0.0) Heat shock 70 kDa protein 15 OS=Arabidopsis thaliana GN=HSP70-15 PE=1 SV=1;; (*TAIR) AT1G79920.2 (e_value=0.0) | Symbols: | Heat shock protein 70 (Hsp 70) family protein | chr1:30058935-30062224 REVERSE LENGTH=831;; (*ITAG) Solyc12g043120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44226370-44230445 transcript_region:SL2.40ch12:44226370..44230445- go_terms:GO:0006265,GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0006265,GO:0005524 NbS00009091g0005.1 protein AED:0.63 eAED:0.67 QI:0|0|0|0.5|0|0.5|2|0|168; (*GB) gi|57013974|ref|YP_173446.1| (e_value=7e-47) hypothetical protein NitaMp108 [Nicotiana tabacum]; NbS00009091g0004.1 protein AED:0.29 eAED:0.45 QI:0|0|0|1|0|0|3|0|171; (*GB) gi|57013975|ref|YP_173447.1| (e_value=3e-64) hypothetical protein NitaMp109 [Nicotiana tabacum]; NbS00009091g0003.1 protein AED:0.62 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|67 NbS00008946g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.8|1|0.75|0.6|5|148|332; (*GB) gi|225424281|ref|XP_002280911.1| (e_value=0.0) PREDICTED: phosphomannomutase/phosphoglucomutase [Vitis vinifera];; (*SWP) sp|Q88BD4|ALGC_PSESM (e_value=8e-24) Phosphomannomutase/phosphoglucomutase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=algC PE=3 SV=1;; (*TAIR) AT1G70820.1 (e_value=0.0) | Symbols: | phosphoglucomutase, putative / glucose phosphomutase, putative | chr1:26705594-26708034 FORWARD LENGTH=615;; (*ITAG) Solyc05g026490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:41503421-41512872 transcript_region:SL2.40ch05:41503421..41512872- go_terms:GO:0004614,GO:0004615 functional_description:"Phosphoglucomutase/phosphomannomutase family protein (AHRD V1 **-* A3IPW6_9CHRO); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614,GO:0004615 NbS00027744g0008.1 protein AED:0.15 eAED:0.15 QI:89|1|0|1|1|1|2|0|30 NbS00027744g0009.1 protein AED:0.65 eAED:0.65 QI:0|1|0|1|1|0|2|0|86; (*GB) gi|147853717|emb|CAN80220.1| (e_value=6e-54) hypothetical protein VITISV_027893 [Vitis vinifera];; (*SWP) sp|O64982|PRS7_PRUPE (e_value=1e-52) 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=1e-53) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=6e-54) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00027744g0010.1 protein AED:0.24 eAED:0.24 QI:594|0.92|0.92|1|0.69|0.71|14|139|575; (*GB) gi|255585243|ref|XP_002533323.1| (e_value=0.0) leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.1 (e_value=0.0) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=719;; (*ITAG) Solyc12g055720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47042875-47052360 transcript_region:SL2.40ch12:47042875..47052360- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00016216g0005.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|660; (*GB) gi|225451092|ref|XP_002264214.1| (e_value=1e-92) PREDICTED: uncharacterized protein LOC100262311 [Vitis vinifera];; (*TAIR) AT5G27330.1 (e_value=1e-59) | Symbols: | Prefoldin chaperone subunit family protein | chr5:9632997-9634883 REVERSE LENGTH=628;; (*ITAG) Solyc01g110960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89169135-89171432 transcript_region:SL2.40ch01:89169135..89171432+ functional_description:"Glutamic acid-rich protein (AHRD V1 ***- Q570K7_ARATH)"; NbS00016216g0015.1 protein AED:0.10 eAED:0.10 QI:488|1|0.5|1|0.66|0.5|4|0|1641; (*GB) gi|113205156|gb|AAX95757.2| (e_value=0.0) BAH domain-containing protein, putative [Solanum lycopersicum];; (*TAIR) AT3G48050.2 (e_value=0.0) | Symbols: | BAH domain ;TFIIS helical bundle-like domain | chr3:17734270-17739412 REVERSE LENGTH=1613;; (*ITAG) Solyc06g071350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40302177-40308190 transcript_region:SL2.40ch06:40302177..40308190+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR017923 TFIIS N-terminal IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00016216g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0|2|458|159; (*GB) gi|113205155|gb|ABI34274.1| (e_value=8e-54) IS10 transposase, putative [Solanum lycopersicum];; (*TAIR) AT5G62865.1 (e_value=3e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD LENGTH=167;; (*ITAG) Solyc06g071370.1.1 (e_value=7e-64) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:40310549-40311019 transcript_region:SL2.40ch06:40310549..40311019- functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"; NbS00017748g0007.1 protein AED:0.30 eAED:0.31 QI:183|0.76|0.78|1|0.84|0.85|14|0|334; (*GB) gi|224143716|ref|XP_002325050.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8CGZ2|ADIP_RAT (e_value=2e-11) Afadin- and alpha-actinin-binding protein OS=Rattus norvegicus GN=Ssx2ip PE=1 SV=1;; (*TAIR) AT5G57410.1 (e_value=5e-154) | Symbols: | Afadin/alpha-actinin-binding protein | chr5:23265102-23267641 REVERSE LENGTH=373;; (*ITAG) Solyc07g019530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11870847-11881688 transcript_region:SL2.40ch07:11870847..11881688+ functional_description:"Afadin- and alpha-actinin-binding protein (AHRD V1 **-- ADIP_MOUSE)"; NbS00017748g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.76|0.92|1|1|13|80|762; (*GB) gi|296034483|gb|ADG85113.1| (e_value=0.0) mismatch repair protein [Solanum lycopersicum];; (*SWP) sp|Q9SMV7|MSH7_ARATH (e_value=0.0) DNA mismatch repair protein Msh6-2 OS=Arabidopsis thaliana GN=MSH6-2 PE=2 SV=1;; (*TAIR) AT3G24495.1 (e_value=0.0) | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109;; (*ITAG) Solyc07g018350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:10375455-10394223 transcript_region:SL2.40ch07:10375455..10394223+ go_terms:GO:0032137 functional_description:"DNA mismatch repair protein muts (AHRD V1 *-*- Q16P35_AEDAE); contains Interpro domain(s) IPR015536 DNA mismatch repair protein MutS-homolog MSH6 "; GO:0032137 NbC23143817g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|61; (*ITAG) Solyc10g007690.2.1 (e_value=2e-11) genomic_reference:SL2.40ch10 gene_region:1950571-1952635 transcript_region:SL2.40ch10:1950571..1952635+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00047065g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|268; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=1e-38) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g044710.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00050311g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|225444103|ref|XP_002266227.1| (e_value=8e-35) PREDICTED: putative germin-like protein 2-1 [Vitis vinifera];; (*SWP) sp|Q6K5P9|GL22_ORYSJ (e_value=5e-31) Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1;; (*TAIR) AT5G38930.1 (e_value=2e-29) | Symbols: | RmlC-like cupins superfamily protein | chr5:15585073-15585841 FORWARD LENGTH=223;; (*ITAG) Solyc10g078840.1.1 (e_value=6e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00050311g0005.1 protein AED:0.36 eAED:0.47 QI:0|0|0.33|1|0|0|3|30|82; (*GB) gi|147797627|emb|CAN60705.1| (e_value=3e-24) hypothetical protein VITISV_025178 [Vitis vinifera];; (*TAIR) AT3G29130.1 (e_value=1e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371); Has 135 Blast hits to 135 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:11102546-11103294 REVERSE LENGTH=119;; (*ITAG) Solyc02g069820.2.1 (e_value=2e-27) genomic_reference:SL2.40ch02 gene_region:34229131-34232684 transcript_region:SL2.40ch02:34229131..34232684- functional_description:"UPF0459 protein C19orf50 homolog (AHRD V1 ***- CS050_DANRE); contains Interpro domain(s) IPR019371 Domain of unknown function KxDL "; NbS00002089g0007.1 protein AED:0.07 eAED:0.07 QI:232|0.75|0.8|1|0.5|0.4|5|171|348; (*GB) gi|255568816|ref|XP_002525379.1| (e_value=2e-124) alcohol dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9ZUC1|QORL_ARATH (e_value=3e-112) Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2;; (*TAIR) AT1G23740.1 (e_value=2e-113) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE LENGTH=386;; (*ITAG) Solyc05g005480.2.1 (e_value=1e-139) genomic_reference:SL2.40ch05 gene_region:352211-355615 transcript_region:SL2.40ch05:352211..355615+ go_terms:GO:0004024 functional_description:"Oxidoreductase zinc-binding dehydrogenase (AHRD V1 **** C2RQQ3_BACCE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00002089g0008.1 protein AED:0.25 eAED:0.28 QI:0|0.66|0.25|1|0|0.25|4|0|140; (*GB) gi|56562175|emb|CAH60890.1| (e_value=6e-61) carbonic anhydrase [Solanum lycopersicum];; (*SWP) sp|P17067|CAHC_PEA (e_value=6e-58) Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT1G70410.1 (e_value=4e-55) | Symbols: ATBCA4, BCA4, CA4 | beta carbonic anhydrase 4 | chr1:26534167-26536505 REVERSE LENGTH=258;; (*ITAG) Solyc05g005490.2.1 (e_value=1e-63) genomic_reference:SL2.40ch05 gene_region:355897-361496 transcript_region:SL2.40ch05:355897..361496- go_terms:GO:0005515 functional_description:"Carbonic anhydrase (AHRD V1 ***- Q5NE21_SOLLC); contains Interpro domain(s) IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site "; GO:0005515 NbS00011424g0001.1 protein AED:0.00 eAED:0.00 QI:82|0.75|0.8|1|0.25|0.4|5|325|311; (*GB) gi|359489714|ref|XP_002280945.2| (e_value=3e-137) PREDICTED: anthocyanidin reductase-like [Vitis vinifera];; (*SWP) sp|P14720|DFRA_PETHY (e_value=3e-48) Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2;; (*TAIR) AT4G27250.1 (e_value=2e-45) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13642803-13644425 REVERSE LENGTH=354;; (*ITAG) Solyc10g009540.1.1 (e_value=5e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3669516-3671834 transcript_region:SL2.40ch10:3669516..3671834+ go_terms:GO:0033729 functional_description:"Anthocyanidin reductase (AHRD V1 **** D3YBD5_TRIRP); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00011424g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|0.5|0.66|3|431|914; (*GB) gi|224139868|ref|XP_002323316.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O22938|Y2182_ARATH (e_value=0.0) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT2G41820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:17447170-17449914 FORWARD LENGTH=890;; (*ITAG) Solyc04g015600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5893539-5896799 transcript_region:SL2.40ch04:5893539..5896799- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00032058g0003.1 protein AED:0.06 eAED:0.09 QI:0|0|0.5|1|0|0.5|2|484|428; (*GB) gi|350537309|ref|NP_001234800.1| (e_value=8e-44) ethylene-responsive nuclear protein [Solanum lycopersicum];; (*ITAG) Solyc02g022920.1.1 (e_value=5e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15128281-15129522 transcript_region:SL2.40ch02:15128281..15129522+ functional_description:"Ethylene-responsive nuclear protein (AHRD V1 ***- Q38MV1_SOLLC)"; NbS00032058g0011.1 protein AED:0.14 eAED:0.14 QI:1475|1|1|1|1|1|6|397|236; (*GB) gi|255564345|ref|XP_002523169.1| (e_value=1e-144) sphingolipid fatty acid alpha hydroxylase [Ricinus communis];; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=3e-58) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=2e-139) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=2e-115) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00032058g0008.1 protein AED:0.12 eAED:0.12 QI:172|1|1|1|0.66|0.57|7|252|236; (*GB) gi|356555924|ref|XP_003546279.1| (e_value=8e-115) PREDICTED: fatty acid 2-hydroxylase-like [Glycine max];; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=1e-53) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=4e-104) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=4e-131) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00041938g0001.1 protein AED:0.06 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225428047|ref|XP_002279232.1| (e_value=1e-44) PREDICTED: SKP1-like protein 1A [Vitis vinifera];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=3e-43) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=3e-44) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=9e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00041938g0011.1 protein AED:0.14 eAED:0.29 QI:0|0|0|1|0|0.25|4|0|198; (*GB) gi|255577436|ref|XP_002529597.1| (e_value=1e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G39170.1 (e_value=4e-23) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc11g008310.1.1 (e_value=2e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00041938g0008.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0.5|0.66|3|0|227; (*GB) gi|225428047|ref|XP_002279232.1| (e_value=2e-22) PREDICTED: SKP1-like protein 1A [Vitis vinifera];; (*SWP) sp|O49484|ASK11_ARATH (e_value=6e-22) SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1;; (*TAIR) AT4G34210.1 (e_value=4e-23) | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461 FORWARD LENGTH=152;; (*ITAG) Solyc03g112710.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57118059-57118514 transcript_region:SL2.40ch03:57118059..57118514+ go_terms:GO:0005515 functional_description:"SKP1-like protein 1 (AHRD V1 ***- B2LUR1_MALDO); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00054537g0008.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.83|0.6|0.66|6|0|344; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-89) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00054537g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|495; (*GB) gi|356511127|ref|XP_003524281.1| (e_value=0.0) PREDICTED: cytochrome P450 71A1-like [Glycine max];; (*SWP) sp|P24465|C71A1_PERAE (e_value=2e-107) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT4G36220.1 (e_value=3e-106) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc00g247300.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:20037955-20040252 transcript_region:SL2.40ch00:20037955..20040252+ go_terms:GO:0019825,GO:0046424 functional_description:"Cytochrome P450"; GO:0019825,GO:0046424 NbS00018042g0008.1 protein AED:0.26 eAED:0.35 QI:133|0.8|0.81|1|0.8|0.90|11|259|555; (*GB) gi|302144199|emb|CBI23326.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NYA1|SPHK1_HUMAN (e_value=3e-46) Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1;; (*TAIR) AT4G21534.1 (e_value=0.0) | Symbols: | Diacylglycerol kinase family protein | chr4:11456230-11458820 FORWARD LENGTH=481;; (*ITAG) Solyc03g006630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1199686-1206083 transcript_region:SL2.40ch03:1199686..1206083- go_terms:GO:0017050 functional_description:"D-erythro-sphingosine kinase (AHRD V1 **** D7MES6_ARALY); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00035925g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|217; (*GB) gi|225443554|ref|XP_002277579.1| (e_value=8e-152) PREDICTED: ras-related protein RABA1f [Vitis vinifera];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=1e-150) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-151) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc07g053480.2.1 (e_value=2e-158) genomic_reference:SL2.40ch07 gene_region:59251334-59254015 transcript_region:SL2.40ch07:59251334..59254015+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00031093g0008.1 protein AED:0.00 eAED:0.00 QI:129|1|0.75|1|0.66|1|4|0|109; (*GB) gi|225445007|ref|XP_002283005.1| (e_value=7e-40) PREDICTED: uncharacterized protein LOC100262721 [Vitis vinifera];; (*TAIR) AT4G26240.1 (e_value=3e-31) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13287011-13288896 REVERSE LENGTH=198; NbS00031093g0009.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|516; (*GB) gi|225445023|ref|XP_002283114.1| (e_value=3e-123) PREDICTED: zinc finger CCCH domain-containing protein 49-like [Vitis vinifera];; (*SWP) sp|O82199|C3H20_ARATH (e_value=1e-101) Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1;; (*TAIR) AT2G19810.1 (e_value=1e-102) | Symbols: | CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359;; (*ITAG) Solyc12g008660.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00007845g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.2|0.8|1|1|5|0|345; (*GB) gi|22328910|ref|NP_194214.2| (e_value=1e-179) argininosuccinate synthase [Arabidopsis thaliana];; (*SWP) sp|Q9SZX3|ASSY_ARATH (e_value=0.0) Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3;; (*TAIR) AT4G24830.1 (e_value=0.0) | Symbols: | arginosuccinate synthase family | chr4:12793085-12795857 REVERSE LENGTH=494;; (*ITAG) Solyc05g012270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5557467-5563630 transcript_region:SL2.40ch05:5557467..5563630+ go_terms:GO:0004055 functional_description:"Argininosuccinate synthase (AHRD V1 **** B9S599_RICCO); contains Interpro domain(s) IPR001518 Argininosuccinate synthase "; GO:0004055 NbS00007845g0002.1 protein AED:0.36 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|185; (*GB) gi|297738088|emb|CBI27289.3| (e_value=2e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10380.1 (e_value=9e-27) | Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305;; (*ITAG) Solyc05g012280.2.1 (e_value=2e-101) genomic_reference:SL2.40ch05 gene_region:5564090-5565680 transcript_region:SL2.40ch05:5564090..5565680- functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 ***- Q9FGR6_ARATH)"; NbS00005953g0025.1 protein AED:0.05 eAED:0.05 QI:55|0.5|0.66|1|0.5|0.66|3|105|331; (*GB) gi|416649|sp|Q03662.1|GSTX1_TOBAC (e_value=4e-139) RecName: Full=Probable glutathione S-transferase; AltName: Full=Auxin-induced protein PGNT1/PCNT110;; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=1e-140) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-72) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011490.2.1 (e_value=4e-121) genomic_reference:SL2.40ch09 gene_region:4809980-4811002 transcript_region:SL2.40ch09:4809980..4811002- go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00005953g0021.1 protein AED:0.12 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|412; (*GB) gi|4585576|gb|AAD25541.1|AF134051_1 (e_value=0.0) fructose-1,6-bisphosphatase precursor [Solanum tuberosum];; (*SWP) sp|P46275|F16P1_PEA (e_value=0.0) Fructose-1,6-bisphosphatase, chloroplastic OS=Pisum sativum GN=FBP PE=1 SV=2;; (*TAIR) AT3G54050.2 (e_value=0.0) | Symbols: HCEF1 | high cyclic electron flow 1 | chr3:20016951-20018527 FORWARD LENGTH=417;; (*ITAG) Solyc09g011810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5090038-5092652 transcript_region:SL2.40ch09:5090038..5092652+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** D0MHZ8_RHOM4); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0042132 NbS00005953g0009.1 protein AED:0.23 eAED:0.26 QI:0|0.66|0.75|1|0.66|0.5|4|917|163; (*GB) gi|225440570|ref|XP_002276763.1| (e_value=6e-31) PREDICTED: uncharacterized protein LOC100264906 [Vitis vinifera];; (*TAIR) AT3G09210.1 (e_value=1e-24) | Symbols: PTAC13 | plastid transcriptionally active 13 | chr3:2825422-2826850 REVERSE LENGTH=333;; (*ITAG) Solyc09g011830.2.1 (e_value=6e-62) genomic_reference:SL2.40ch09 gene_region:5102680-5106286 transcript_region:SL2.40ch09:5102680..5106286+ go_terms:GO:0032968 functional_description:"Transcription antitermination protein nusG (AHRD V1 *-*- D8IEG9_BRAP9); contains Interpro domain(s) IPR006645 Transcription antitermination protein, NusG, N-terminal "; GO:0032968 NbS00005953g0029.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.6|0.75|0.6|5|0|431; (*GB) gi|297740267|emb|CBI30449.3| (e_value=8e-65) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37960.2 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:15886962-15889180 REVERSE LENGTH=480;; (*ITAG) Solyc09g011820.2.1 (e_value=7e-138) genomic_reference:SL2.40ch09 gene_region:5092997-5097032 transcript_region:SL2.40ch09:5092997..5097032- functional_description:"Unknown Protein (AHRD V1)"; NbS00005953g0016.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|416651|sp|Q03664.1|GSTX3_TOBAC (e_value=5e-27) RecName: Full=Probable glutathione S-transferase; AltName: Full=Auxin-induced protein PCNT103;; (*SWP) sp|Q03664|GSTX3_TOBAC (e_value=1e-28) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G29420.1 (e_value=4e-21) | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase tau 7 | chr2:12618111-12618871 REVERSE LENGTH=227;; (*ITAG) Solyc09g011550.2.1 (e_value=1e-28) genomic_reference:SL2.40ch09 gene_region:4837594-4838668 transcript_region:SL2.40ch09:4837594..4838668+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00005953g0028.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|174; (*GB) gi|60459397|gb|AAX20044.1| (e_value=4e-71) probable glutathione-S-transferase [Capsicum annuum];; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=3e-72) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=2e-53) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011540.2.1 (e_value=3e-94) genomic_reference:SL2.40ch09 gene_region:4835846-4836876 transcript_region:SL2.40ch09:4835846..4836876+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00012436g0006.1 protein AED:0.17 eAED:0.17 QI:130|1|0.5|1|0|0|2|0|19 NbS00012436g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.62|0.55|0.88|0.87|0.88|9|0|547; (*GB) gi|5734587|emb|CAB52797.1| (e_value=0.0) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=1e-79) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT4G28220.1 (e_value=0.0) | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13993078-13995651 FORWARD LENGTH=571;; (*ITAG) Solyc07g054640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60229606-60234942 transcript_region:SL2.40ch07:60229606..60234942+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00012396g0005.1 protein AED:0.04 eAED:0.07 QI:0|0.33|0.25|1|0.33|0.25|4|60|351; (*GB) gi|359484275|ref|XP_002278189.2| (e_value=4e-60) PREDICTED: uncharacterized protein LOC100261173 [Vitis vinifera];; (*TAIR) AT3G13960.1 (e_value=6e-53) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc07g041640.2.1 (e_value=7e-139) genomic_reference:SL2.40ch07 gene_region:51144656-51146005 transcript_region:SL2.40ch07:51144656..51146005- go_terms:GO:0005634 functional_description:"Growth-regulating factor 1 (AHRD V1 *--- Q6AWY8_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00000394g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|1|0.33|0.25|4|0|320; (*GB) gi|224124728|ref|XP_002319407.1| (e_value=1e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|P22195|PER1_ARAHY (e_value=8e-144) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=4e-116) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc06g082420.2.1 (e_value=4e-177) genomic_reference:SL2.40ch06 gene_region:44532060-44534274 transcript_region:SL2.40ch06:44532060..44534274+ go_terms:GO:0005515 functional_description:"Peroxidase 3 (AHRD V1 ***- Q9SSZ7_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00000394g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|1|0.33|3|0|66 NbS00000394g0012.1 protein AED:0.12 eAED:0.12 QI:63|1|1|1|1|1|5|284|204; (*GB) gi|297745798|emb|CBI15854.3| (e_value=1e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G30280.1 (e_value=2e-26) | Symbols: RDM4, DMS4 | RNA-directed DNA methylation 4 | chr2:12909804-12911860 REVERSE LENGTH=346;; (*ITAG) Solyc06g082390.2.1 (e_value=6e-77) genomic_reference:SL2.40ch06 gene_region:44508767-44513236 transcript_region:SL2.40ch06:44508767..44513236+ go_terms:GO:0003700 functional_description:"cDNA clone J065191E12 full insert sequence (AHRD V1 ***- B7F8Y2_ORYSJ)"; GO:0003700 NbS00055690g0004.1 protein AED:0.26 eAED:0.26 QI:60|1|0|1|1|0.5|2|0|66; (*GB) gi|147766835|emb|CAN76413.1| (e_value=3e-31) hypothetical protein VITISV_043812 [Vitis vinifera];; (*TAIR) AT5G51430.1 (e_value=7e-30) | Symbols: EYE | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:20887044-20890795 REVERSE LENGTH=836;; (*ITAG) Solyc05g006950.2.1 (e_value=2e-37) genomic_reference:SL2.40ch05 gene_region:1542784-1548453 transcript_region:SL2.40ch05:1542784..1548453+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 7 (AHRD V1 ***- COG7_MOUSE); contains Interpro domain(s) IPR019335 Conserved oligomeric Golgi complex, subunit 7 "; GO:0005515 NbS00040890g0010.1 protein AED:0.01 eAED:0.01 QI:120|1|1|1|0|0|2|246|81; (*ITAG) Solyc10g049420.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:41251842-41252376 transcript_region:SL2.40ch10:41251842..41252376+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040890g0012.1 protein AED:0.08 eAED:0.08 QI:431|0.75|0.66|1|0.75|0.66|9|0|1197; (*GB) gi|359481863|ref|XP_003632681.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257222 [Vitis vinifera];; (*TAIR) AT3G58050.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). | chr3:21492539-21497018 FORWARD LENGTH=1209;; (*ITAG) Solyc10g079010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59981121-59989416 transcript_region:SL2.40ch10:59981121..59989416+ go_terms:GO:0006265 functional_description:"Unknown Protein (AHRD V1)"; GO:0006265 NbS00024450g0007.1 protein AED:0.16 eAED:0.16 QI:289|0.66|0.57|1|0.66|0.85|7|0|351; (*GB) gi|30695469|ref|NP_175736.2| (e_value=6e-144) putative beta-1,3-galactosyltransferase 14 [Arabidopsis thaliana];; (*SWP) sp|Q8L7M1|B3GTE_ARATH (e_value=2e-145) Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1;; (*TAIR) AT1G53290.1 (e_value=1e-146) | Symbols: | Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345;; (*ITAG) Solyc10g007200.2.1 (e_value=4e-175) genomic_reference:SL2.40ch10 gene_region:1630883-1636235 transcript_region:SL2.40ch10:1630883..1636235+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00024450g0006.1 protein AED:0.00 eAED:0.00 QI:323|1|1|1|0|0.5|2|256|313; (*ITAG) Solyc10g007190.2.1 (e_value=5e-170) genomic_reference:SL2.40ch10 gene_region:1627649-1630351 transcript_region:SL2.40ch10:1627649..1630351- go_terms:GO:0003677 functional_description:"Transposon protein (AHRD V1 *-*- B6U4H6_MAIZE); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00000574g0002.1 protein AED:0.25 eAED:0.25 QI:245|0.33|0.5|1|1|1|4|382|341; (*GB) gi|317106597|dbj|BAJ53105.1| (e_value=2e-14) JHL20J20.12 [Jatropha curcas];; (*ITAG) Solyc04g081730.2.1 (e_value=2e-103) genomic_reference:SL2.40ch04 gene_region:63257232-63260000 transcript_region:SL2.40ch04:63257232..63260000- functional_description:"Unknown Protein (AHRD V1)"; NbS00000574g0005.1 protein AED:0.21 eAED:0.21 QI:347|0.75|1|1|0.75|0.8|5|774|176; (*GB) gi|317106596|dbj|BAJ53104.1| (e_value=3e-61) JHL20J20.11 [Jatropha curcas];; (*SWP) sp|Q7ZUC7|PGES2_DANRE (e_value=4e-23) Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1;; (*TAIR) AT5G42150.1 (e_value=8e-55) | Symbols: | Glutathione S-transferase family protein | chr5:16846247-16847909 FORWARD LENGTH=315;; (*ITAG) Solyc04g081740.2.1 (e_value=6e-96) genomic_reference:SL2.40ch04 gene_region:63261363-63265459 transcript_region:SL2.40ch04:63261363..63265459+ go_terms:GO:0016563,GO:0003677 functional_description:"Prostaglandin E synthase 2-like (AHRD V1 ***- B0S751_DANRE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0016563,GO:0003677 NbS00018302g0001.1 protein AED:0.02 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|218|316; (*GB) gi|225464680|ref|XP_002275506.1| (e_value=7e-40) PREDICTED: probable membrane-associated kinase regulator 2-like [Vitis vinifera];; (*SWP) sp|Q9FLX4|MAKR5_ARATH (e_value=6e-13) Probable membrane-associated kinase regulator 5 OS=Arabidopsis thaliana GN=MAKR5 PE=2 SV=1;; (*TAIR) AT5G52870.1 (e_value=5e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21428191-21429367 REVERSE LENGTH=326;; (*ITAG) Solyc03g007700.1.1 (e_value=2e-84) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:2229811-2230734 transcript_region:SL2.40ch03:2229811..2230734+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006753g0006.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|1|1|8|0|346; (*GB) gi|359479028|ref|XP_002284705.2| (e_value=6e-166) PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LCU7|MECR_ARATH (e_value=1e-154) Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1;; (*TAIR) AT3G45770.1 (e_value=1e-155) | Symbols: | Polyketide synthase, enoylreductase family protein | chr3:16805753-16807774 REVERSE LENGTH=375;; (*ITAG) Solyc12g096780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63898570-63901441 transcript_region:SL2.40ch12:63898570..63901441+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Mitochondrial trans-2-enoyl-CoA reductase (AHRD V1 **-- A2A846_MOUSE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00014052g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.87|1|1|1|8|0|386; (*GB) gi|47933777|gb|AAT39459.1| (e_value=0.0) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=3e-163) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G21750.2 (e_value=1e-161) | Symbols: ATPDIL1-1, PDIL1-1 | PDI-like 1-1 | chr1:7645767-7648695 FORWARD LENGTH=487;; (*ITAG) Solyc06g005940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:921114-925482 transcript_region:SL2.40ch06:921114..925482- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00007166g0006.1 protein AED:0.28 eAED:0.36 QI:5|0.4|0|0.83|0.2|0.33|6|265|42 NbS00007166g0104.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|0|0.5|2|0|161 NbC25247182g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|16|107; (*GB) gi|326417692|gb|ADZ73581.1| (e_value=2e-74) actin 1 [Vaccaria hispanica];; (*SWP) sp|P30172|ACT12_SOLTU (e_value=8e-74) Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=3e-73) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc01g104770.2.1 (e_value=9e-75) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00005935g0001.1 protein AED:0.55 eAED:0.67 QI:0|0|0|0.5|1|1|4|0|130; (*GB) gi|351727941|ref|NP_001236666.1| (e_value=1e-84) uncharacterized protein LOC100305531 [Glycine max];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=2e-77) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=1e-78) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=8e-79) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00005935g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|224071057|ref|XP_002303350.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g068460.1.1 (e_value=8e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:32979704-32980282 transcript_region:SL2.40ch02:32979704..32980282- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbS00005935g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|68 NbS00001771g0109.1 protein AED:0.27 eAED:0.27 QI:310|0.94|0.8|1|0.89|0.95|20|76|830 NbS00001771g0101.1 protein AED:0.01 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|133 NbS00044612g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|890; (*GB) gi|225441064|ref|XP_002277923.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Vitis vinifera];; (*SWP) sp|Q9FFN1|PP363_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1;; (*TAIR) AT5G03800.1 (e_value=0.0) | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1010894-1013584 REVERSE LENGTH=896;; (*ITAG) Solyc01g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80488056-80490928 transcript_region:SL2.40ch01:80488056..80490928- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00044612g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.85|0.62|1|0.85|0.87|8|0|600; (*GB) gi|255542430|ref|XP_002512278.1| (e_value=0.0) Serine/threonine-protein kinase cdk9, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=572;; (*ITAG) Solyc01g098160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80491793-80500920 transcript_region:SL2.40ch01:80491793..80500920- go_terms:GO:0005515 functional_description:"Cell division protein kinase 12 (AHRD V1 ***- CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00022000g0016.1 protein AED:0.19 eAED:0.19 QI:294|0.81|0.83|0.91|0.81|0.83|12|0|343; (*GB) gi|350536611|ref|NP_001233999.1| (e_value=0.0) beta 1,3-glycosyltransferase-like protein I [Solanum lycopersicum];; (*SWP) sp|Q94F27|B3GTB_ARATH (e_value=2e-147) Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1;; (*TAIR) AT5G53340.2 (e_value=1e-148) | Symbols: | Galactosyltransferase family protein | chr5:21641045-21643195 REVERSE LENGTH=337;; (*ITAG) Solyc08g081920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00022000g0013.1 protein AED:0.08 eAED:0.08 QI:311|1|1|1|0.54|0.33|12|172|1471; (*GB) gi|359473896|ref|XP_002271694.2| (e_value=0.0) PREDICTED: ABC transporter C family member 10-like [Vitis vinifera];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc08g081890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61972311-61978302 transcript_region:SL2.40ch08:61972311..61978302- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015431 NbS00022000g0014.1 protein AED:0.23 eAED:0.23 QI:275|1|0.87|1|0.71|0.75|8|0|733; (*GB) gi|359487636|ref|XP_002279490.2| (e_value=0.0) PREDICTED: translation initiation factor IF-2-like [Vitis vinifera];; (*SWP) sp|B8EIA7|IF2_METSB (e_value=3e-151) Translation initiation factor IF-2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=infB PE=3 SV=1;; (*TAIR) AT4G11160.1 (e_value=0.0) | Symbols: | Translation initiation factor 2, small GTP-binding protein | chr4:6803846-6806726 FORWARD LENGTH=743;; (*ITAG) Solyc08g081900.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61981008-61987975 transcript_region:SL2.40ch08:61981008..61987975- go_terms:GO:0003743 functional_description:"Translation initiation factor IF-2 (AHRD V1 **** D7LZF5_ARALY); contains Interpro domain(s) IPR000178 Initiation factor 2 "; GO:0003743 NbS00022000g0019.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.66|1|1|1|3|0|101; (*GB) gi|217075356|gb|ACJ86038.1| (e_value=1e-27) unknown [Medicago truncatula];; (*SWP) sp|Q9SWE7|VATE_CITLI (e_value=6e-28) V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1;; (*TAIR) AT4G11150.1 (e_value=3e-27) | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP synthase subunit E1 | chr4:6800091-6801696 FORWARD LENGTH=230;; (*ITAG) Solyc08g081910.2.1 (e_value=4e-30) genomic_reference:SL2.40ch08 gene_region:61988688-61993931 transcript_region:SL2.40ch08:61988688..61993931- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00013308g0004.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0|0|3|0|472; (*GB) gi|124484371|dbj|BAF46296.1| (e_value=0.0) cytochrome P450 [Ipomoea nil];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=7e-87) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT2G23180.1 (e_value=1e-132) | Symbols: CYP96A1 | cytochrome P450, family 96, subfamily A, polypeptide 1 | chr2:9874953-9876503 FORWARD LENGTH=516;; (*ITAG) Solyc10g087040.1.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:61337352-61339238 transcript_region:SL2.40ch10:61337352..61339238+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00013215g0010.1 protein AED:0.13 eAED:0.13 QI:307|1|1|1|1|1|3|550|332; (*GB) gi|224082564|ref|XP_002306743.1| (e_value=5e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=5e-43) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1;; (*TAIR) AT1G29860.1 (e_value=4e-44) | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein 71 | chr1:10454482-10455652 FORWARD LENGTH=282;; (*ITAG) Solyc12g011200.1.1 (e_value=7e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4045306-4047487 transcript_region:SL2.40ch12:4045306..4047487- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 ***- C9DI18_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00013215g0011.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|480|286; (*GB) gi|302143542|emb|CBI22103.3| (e_value=2e-49) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G06500.4 (e_value=7e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 25 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1990176-1990586 FORWARD LENGTH=136;; (*ITAG) Solyc12g011190.1.1 (e_value=4e-130) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4033785-4039022 transcript_region:SL2.40ch12:4033785..4039022+ functional_description:"Nodule inception protein (Fragment) (AHRD V1 *--- A9DLX6_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00013215g0008.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|433; (*GB) gi|225446849|ref|XP_002279693.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SJG6|PP200_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1;; (*TAIR) AT2G42920.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:17858705-17860384 FORWARD LENGTH=559;; (*ITAG) Solyc11g064750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46987080-46990979 transcript_region:SL2.40ch11:46987080..46990979+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJE4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00046654g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|357472183|ref|XP_003606376.1| (e_value=2e-40) hypothetical protein MTR_4g059320 [Medicago truncatula];; (*TAIR) AT5G03230.1 (e_value=8e-31) | Symbols: | Protein of unknown function, DUF584 | chr5:769636-770136 FORWARD LENGTH=166;; (*ITAG) Solyc09g007790.1.1 (e_value=3e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:1315444-1315920 transcript_region:SL2.40ch09:1315444..1315920+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 ***- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00046654g0005.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|0|179; (*GB) gi|77999281|gb|ABB16987.1| (e_value=3e-105) unknown [Solanum tuberosum];; (*SWP) sp|Q9SKN3|CSPL6_ARATH (e_value=1e-72) CASP-like protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1;; (*TAIR) AT2G28370.1 (e_value=8e-74) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:12132092-12133447 FORWARD LENGTH=179;; (*ITAG) Solyc10g086120.1.1 (e_value=3e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64383467-64388684 transcript_region:SL2.40ch10:64383467..64388684- functional_description:"UPF0497 membrane protein At2g28370 (AHRD V1 ***- U4977_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00017710g0003.1 protein AED:0.10 eAED:0.10 QI:130|1|1|1|1|1|3|350|395; (*GB) gi|575942|dbj|BAA07681.1| (e_value=0.0) stearoyl-acyl carrier protein desaturase [Sesamum indicum];; (*SWP) sp|P22337|STAD_RICCO (e_value=0.0) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT2G43710.1 (e_value=0.0) | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr2:18120107-18122495 FORWARD LENGTH=401;; (*ITAG) Solyc06g053480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32770333-32774663 transcript_region:SL2.40ch06:32770333..32774663+ go_terms:GO:0004768,GO:0045300 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** B7TZ44_SPIOL); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768,GO:0045300 NbS00034638g0009.1 protein AED:0.14 eAED:0.16 QI:14|0.6|0.36|1|0.9|0.81|11|0|1750; (*GB) gi|255538608|ref|XP_002510369.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G42950.1 (e_value=5e-104) | Symbols: | GYF domain-containing protein | chr5:17224436-17231044 FORWARD LENGTH=1714;; (*ITAG) Solyc04g080240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62073311-62083188 transcript_region:SL2.40ch04:62073311..62083188- functional_description:"PERQ amino acid-rich with GYF domain-containing protein 2 (AHRD V1 *-*- PERQ2_MOUSE); contains Interpro domain(s) IPR003169 GYF "; NbS00048796g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|877; (*GB) gi|224079025|ref|XP_002305722.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=2e-126) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=1e-127) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc02g072070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35922448-35924956 transcript_region:SL2.40ch02:35922448..35924956- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00048796g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|1|1|2|0|732; (*GB) gi|30013679|gb|AAP03882.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 276 [Nicotiana tabacum];; (*SWP) sp|Q9C7R6|PUB17_ARATH (e_value=0.0) U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1;; (*TAIR) AT1G29340.1 (e_value=0.0) | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:10264412-10266601 FORWARD LENGTH=729;; (*ITAG) Solyc02g072080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35929890-35932064 transcript_region:SL2.40ch02:35929890..35932064- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein 17 (AHRD V1 **-- PUB17_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00048796g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|320; (*GB) gi|356561927|ref|XP_003549228.1| (e_value=8e-26) PREDICTED: heat stress transcription factor A-2-like [Glycine max];; (*SWP) sp|O80982|HSFA2_ARATH (e_value=3e-23) Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1;; (*TAIR) AT2G26150.1 (e_value=2e-24) | Symbols: ATHSFA2, HSFA2 | heat shock transcription factor A2 | chr2:11135856-11137217 FORWARD LENGTH=345;; (*ITAG) Solyc02g072060.1.1 (e_value=2e-144) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:35920510-35921838 transcript_region:SL2.40ch02:35920510..35921838+ go_terms:GO:0005634 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00041451g0008.1 protein AED:0.35 eAED:0.35 QI:236|0.8|0.81|1|0.7|0.54|11|62|306; (*GB) gi|225469300|ref|XP_002269258.1| (e_value=2e-150) PREDICTED: nuclease S1 [Vitis vinifera];; (*SWP) sp|F4JJL0|ENDO4_ARATH (e_value=8e-144) Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1;; (*TAIR) AT4G21585.1 (e_value=6e-145) | Symbols: ENDO4 | endonuclease 4 | chr4:11477988-11479953 FORWARD LENGTH=299;; (*ITAG) Solyc02g078920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38118699-38128337 transcript_region:SL2.40ch02:38118699..38128337- go_terms:GO:0000014,GO:0043765 functional_description:"SP I mismatch endonuclease (AHRD V1 **** A0MSM3_SPIOL); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00041451g0009.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|1|0.75|4|0|124; (*GB) gi|349731971|dbj|BAL03523.1| (e_value=1e-83) endonuclease 1 [Solanum lycopersicum];; (*SWP) sp|Q9SXA6|ENDO1_ARATH (e_value=6e-69) Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1;; (*TAIR) AT1G11190.1 (e_value=4e-70) | Symbols: BFN1, ENDO1 | bifunctional nuclease i | chr1:3750338-3752696 REVERSE LENGTH=305;; (*ITAG) Solyc02g078910.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:38116631-38118812 transcript_region:SL2.40ch02:38116631..38118812- go_terms:GO:0000014,GO:0043765 functional_description:"Endonuclease (AHRD V1 **** Q6B782_SOLTU); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00041451g0010.1 protein AED:0.48 eAED:0.48 QI:0|1|0.33|1|0.5|0.66|3|0|81; (*GB) gi|50657596|gb|AAT79582.1| (e_value=6e-49) endonuclease [Solanum tuberosum];; (*SWP) sp|Q9SXA6|ENDO1_ARATH (e_value=1e-36) Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1;; (*TAIR) AT1G11190.1 (e_value=1e-37) | Symbols: BFN1, ENDO1 | bifunctional nuclease i | chr1:3750338-3752696 REVERSE LENGTH=305;; (*ITAG) Solyc02g078910.2.1 (e_value=1e-51) genomic_reference:SL2.40ch02 gene_region:38116631-38118812 transcript_region:SL2.40ch02:38116631..38118812- go_terms:GO:0000014,GO:0043765 functional_description:"Endonuclease (AHRD V1 **** Q6B782_SOLTU); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00003652g0013.1 protein AED:0.06 eAED:0.06 QI:259|1|0|1|1|1|2|0|509; (*GB) gi|11386827|sp|Q40152.1|HSF8_SOLLC (e_value=0.0) RecName: Full=Heat shock factor protein HSF8; AltName: Full=Heat shock transcription factor 8; Short=HSTF 8; AltName: Full=Heat stress transcription factor;; (*SWP) sp|Q40152|HSF8_SOLLC (e_value=0.0) Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1;; (*TAIR) AT5G16820.2 (e_value=9e-124) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc08g076590.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57710679-57714096 transcript_region:SL2.40ch08:57710679..57714096- go_terms:GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00003652g0011.1 protein AED:0.51 eAED:0.83 QI:0|0|0|0.71|0.16|0.28|7|0|243; (*GB) gi|356517126|ref|XP_003527241.1| (e_value=2e-19) PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein-like [Glycine max];; (*TAIR) AT5G46850.3 (e_value=2e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). | chr5:19010852-19012010 FORWARD LENGTH=299;; (*ITAG) Solyc08g076570.2.1 (e_value=1e-37) genomic_reference:SL2.40ch08 gene_region:57702045-57704680 transcript_region:SL2.40ch08:57702045..57704680- go_terms:GO:0005789 functional_description:"Phosphatidylinositol-glycan biosynthesis class X protein (AHRD V1 **-- PIGX_HUMAN); contains Interpro domain(s) IPR013233 PIG-X/PBN1 "; GO:0005789 NbS00003652g0002.1 protein AED:0.35 eAED:0.37 QI:455|0.66|0.71|1|1|1|7|0|272; (*GB) gi|76573305|gb|ABA46757.1| (e_value=4e-156) syntaxin-like protein [Solanum tuberosum];; (*SWP) sp|P93654|SYP22_ARATH (e_value=5e-119) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=4e-120) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc08g076540.2.1 (e_value=9e-159) genomic_reference:SL2.40ch08 gene_region:57691305-57695575 transcript_region:SL2.40ch08:57691305..57695575+ go_terms:GO:0005484 functional_description:"Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00030694g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|0.66|0.75|4|0|552; (*GB) gi|224056240|ref|XP_002298771.1| (e_value=6e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19610.1 (e_value=8e-35) | Symbols: | Plant protein of unknown function (DUF936) | chr3:6812493-6814660 REVERSE LENGTH=640;; (*ITAG) Solyc01g107120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86503184-86506038 transcript_region:SL2.40ch01:86503184..86506038+ functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00030694g0006.1 protein AED:0.48 eAED:0.49 QI:0|0|0|0.5|0|0|2|0|85; (*GB) gi|224056240|ref|XP_002298771.1| (e_value=1e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g107120.2.1 (e_value=8e-33) genomic_reference:SL2.40ch01 gene_region:86503184-86506038 transcript_region:SL2.40ch01:86503184..86506038+ functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00057134g0007.1 protein AED:0.07 eAED:0.07 QI:145|1|1|1|0.8|0.83|6|536|424; (*GB) gi|166203413|gb|ABY84675.1| (e_value=0.0) multicopy suppressor of IRA1 [Nicotiana tabacum];; (*SWP) sp|O22466|MSI1_SOLLC (e_value=0.0) WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1;; (*TAIR) AT5G58230.1 (e_value=0.0) | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 repeat-like superfamily protein | chr5:23556112-23557994 FORWARD LENGTH=424;; (*ITAG) Solyc01g104510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84733582-84738514 transcript_region:SL2.40ch01:84733582..84738514- go_terms:GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042393 NbS00057134g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0.25|0.5|1|1|4|0|294; (*GB) gi|225448099|ref|XP_002276733.1| (e_value=8e-88) PREDICTED: uncharacterized protein LOC100266910 [Vitis vinifera];; (*TAIR) AT1G68140.3 (e_value=6e-63) | Symbols: | Protein of unknown function (DUF1644) | chr1:25539410-25540414 REVERSE LENGTH=334;; (*ITAG) Solyc01g104500.2.1 (e_value=1e-89) genomic_reference:SL2.40ch01 gene_region:84727020-84728414 transcript_region:SL2.40ch01:84727020..84728414- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00012184g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|16903206|gb|AAL27855.1| (e_value=2e-31) lipid transfer protein precursor [Davidia involucrata];; (*SWP) sp|Q9M5X8|NLTP_PRUAV (e_value=2e-29) Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1;; (*TAIR) AT2G38540.1 (e_value=3e-27) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc06g065600.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37371832-37372191 transcript_region:SL2.40ch06:37371832..37372191+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q2QKE7_CATRO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00028874g0002.1 protein AED:0.36 eAED:0.42 QI:75|1|0|1|0.5|0.66|3|0|65; (*GB) gi|225455844|ref|XP_002273351.1| (e_value=1e-21) PREDICTED: transcription initiation factor TFIID subunit 2-like isoform 1 [Vitis vinifera];; (*TAIR) AT1G73960.2 (e_value=1e-18) | Symbols: TAF2 | TBP-associated factor 2 | chr1:27805173-27814433 REVERSE LENGTH=1370;; (*ITAG) Solyc03g119780.2.1 (e_value=7e-27) genomic_reference:SL2.40ch03 gene_region:62396383-62411459 transcript_region:SL2.40ch03:62396383..62411459- go_terms:GO:0008270 functional_description:"Transcription initiation factor TFIID subunit (AHRD V1 *--- C7G081_DICDI); contains Interpro domain(s) IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal "; GO:0008270 NbS00059969g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0.5|2|0|269; (*GB) gi|323149963|gb|ADX33331.1| (e_value=2e-126) R2R3-MYB transcription factor [Petunia x hybrida];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=4e-104) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=3e-101) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc01g111500.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00059969g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.77|0.9|1|1|1|10|408|456; (*GB) gi|255579975|ref|XP_002530822.1| (e_value=0.0) calcium lipid binding protein, putative [Ricinus communis];; (*SWP) sp|Q5M7N9|ESYT3_XENTR (e_value=2e-23) Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1;; (*TAIR) AT2G20990.1 (e_value=3e-166) | Symbols: SYTA, NTMC2TYPE1.1, ATSYTA, NTMC2T1.1, SYT1 | synaptotagmin A | chr2:9014827-9017829 FORWARD LENGTH=541;; (*ITAG) Solyc01g111520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89504374-89512877 transcript_region:SL2.40ch01:89504374..89512877- go_terms:GO:0005509 functional_description:"Synaptotagmin (AHRD V1 *--- B0W3L1_CULQU); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005509 NbS00013606g0006.1 protein AED:0.18 eAED:0.18 QI:150|1|0.5|1|0|0|2|0|428; (*GB) gi|164458462|gb|ABY57638.1| (e_value=9e-29) RAP2.6-like protein [Solanum lycopersicum];; (*SWP) sp|Q70II3|EF110_ARATH (e_value=5e-18) Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2;; (*TAIR) AT5G50080.1 (e_value=4e-19) | Symbols: ERF110 | ethylene response factor 110 | chr5:20365948-20366835 FORWARD LENGTH=220;; (*ITAG) Solyc04g071770.2.1 (e_value=1e-86) genomic_reference:SL2.40ch04 gene_region:56338949-56340665 transcript_region:SL2.40ch04:56338949..56340665+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00019334g0007.1 protein AED:0.21 eAED:0.21 QI:198|0.66|0.57|1|0.83|0.85|7|0|350; (*GB) gi|225462157|ref|XP_002266274.1| (e_value=1e-146) PREDICTED: post-GPI attachment to proteins factor 3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9P6N9|PER1_SCHPO (e_value=5e-40) Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=2 SV=1;; (*TAIR) AT1G16560.3 (e_value=2e-117) | Symbols: | Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342;; (*ITAG) Solyc05g051320.1.1 (e_value=1e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60749337-60751829 transcript_region:SL2.40ch05:60749337..60751829+ go_terms:GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_MOUSE); contains Interpro domain(s) IPR007217 Per1-like "; GO:0016788 NbS00033643g0004.1 protein AED:0.24 eAED:0.62 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|114; (*GB) gi|224082986|ref|XP_002306919.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=3e-18) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=2e-19) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc12g089280.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00013381g0009.1 protein AED:0.27 eAED:0.27 QI:214|0.95|0.95|1|0.80|0.81|22|204|453; (*GB) gi|255583291|ref|XP_002532409.1| (e_value=0.0) Xylose isomerase, putative [Ricinus communis];; (*SWP) sp|Q9FKK7|XYLA_ARATH (e_value=0.0) Xylose isomerase OS=Arabidopsis thaliana GN=XYLA PE=2 SV=2;; (*TAIR) AT5G57655.2 (e_value=0.0) | Symbols: | xylose isomerase family protein | chr5:23347030-23349805 FORWARD LENGTH=477;; (*ITAG) Solyc07g006650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1517595-1522933 transcript_region:SL2.40ch07:1517595..1522933- go_terms:GO:0005975,GO:0009045 functional_description:"Xylose isomerase (AHRD V1 ***- B9T2E0_RICCO); contains Interpro domain(s) IPR013452 Xylose isomerase, bacterial type "; GO:0005975,GO:0009045 NbS00013381g0006.1 protein AED:0.30 eAED:0.34 QI:169|0.62|0.77|0.88|0.37|0.66|9|504|221; (*GB) gi|222640197|gb|EEE68329.1| (e_value=9e-104) hypothetical protein OsJ_26610 [Oryza sativa Japonica Group];; (*SWP) sp|Q96361|ARF1_BRARP (e_value=3e-100) ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3;; (*TAIR) AT2G24765.1 (e_value=1e-100) | Symbols: ARF3, ARL1, ATARL1 | ADP-ribosylation factor 3 | chr2:10562822-10564961 FORWARD LENGTH=182;; (*ITAG) Solyc07g006640.2.1 (e_value=8e-108) genomic_reference:SL2.40ch07 gene_region:1506417-1517122 transcript_region:SL2.40ch07:1506417..1517122+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor 3 (AHRD V1 ***- B4FM64_MAIZE); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525,GO:0005622 NbC25758006g0002.1 protein AED:0.26 eAED:0.33 QI:0|0|0|0.33|0.5|0.66|3|0|178; (*GB) gi|356560194|ref|XP_003548379.1| (e_value=8e-30) PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max];; (*TAIR) AT3G14250.1 (e_value=2e-23) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc03g115920.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:59553261-59554223 transcript_region:SL2.40ch03:59553261..59554223- go_terms:GO:0008270 functional_description:"Zinc finger protein-like protein (AHRD V1 **-- Q1PEQ5_ARATH); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00004159g0013.1 protein AED:0.02 eAED:0.02 QI:104|1|1|1|1|1|5|177|419; (*GB) gi|255538706|ref|XP_002510418.1| (e_value=0.0) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|Q9FJZ3|MAN7_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=0.0) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc04g080620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62327013-62331103 transcript_region:SL2.40ch04:62327013..62331103+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00004159g0012.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|129; (*GB) gi|225458215|ref|XP_002281680.1| (e_value=7e-61) PREDICTED: 50S ribosomal protein L31, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FWS4|RK31_ARATH (e_value=4e-54) 50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1;; (*TAIR) AT1G75350.1 (e_value=3e-55) | Symbols: emb2184 | Ribosomal protein L31 | chr1:28272163-28272687 FORWARD LENGTH=144;; (*ITAG) Solyc04g080630.2.1 (e_value=2e-77) genomic_reference:SL2.40ch04 gene_region:62332069-62332925 transcript_region:SL2.40ch04:62332069..62332925+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L31 (AHRD V1 ***- A5AHS8_VITVI); contains Interpro domain(s) IPR002150 Ribosomal protein L31 "; GO:0005840 NbS00023872g0008.1 protein AED:0.35 eAED:0.45 QI:124|0.44|0.3|1|0.44|0.4|10|0|265; (*GB) gi|297743172|emb|CBI36039.3| (e_value=6e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g083510.2.1 (e_value=7e-45) genomic_reference:SL2.40ch06 gene_region:45199298-45204024 transcript_region:SL2.40ch06:45199298..45204024- functional_description:"Unknown Protein (AHRD V1)"; NbS00014309g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|517|493; (*GB) gi|255575043|ref|XP_002528427.1| (e_value=0.0) Rop guanine nucleotide exchange factor, putative [Ricinus communis];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=0.0) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT4G38430.1 (e_value=0.0) | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide exchange factor 1 | chr4:17986643-17988659 FORWARD LENGTH=548;; (*ITAG) Solyc04g082110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63488748-63491962 transcript_region:SL2.40ch04:63488748..63491962- go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 **-* ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00043092g0003.1 protein AED:0.16 eAED:0.16 QI:995|0.81|0.75|1|0.90|0.83|12|0|384; (*GB) gi|304368145|gb|ADM26718.1| (e_value=0.0) glycolate oxidase [Nicotiana benthamiana];; (*SWP) sp|P05414|GOX_SPIOL (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G14420.2 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821804-4823899 FORWARD LENGTH=367;; (*ITAG) Solyc07g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61655287-61658877 transcript_region:SL2.40ch07:61655287..61658877+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0S8Q7_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00054786g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|0.5|0.66|3|0|193; (*GB) gi|297735265|emb|CBI17627.3| (e_value=2e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-24) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=6e-28) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g111010.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:89184158-89188515 transcript_region:SL2.40ch01:89184158..89188515+ go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 *-*- Q40266_MESCR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0016020 NbS00054786g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|225430947|ref|XP_002271427.1| (e_value=8e-46) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=1e-29) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=6e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc10g054760.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00017893g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|0.66|0.5|0.66|3|0|135; (*GB) gi|224075517|ref|XP_002304662.1| (e_value=2e-70) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q53NF7|NAC71_ORYSJ (e_value=3e-37) NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=2e-65) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc01g009860.2.1 (e_value=1e-63) genomic_reference:SL2.40ch01 gene_region:4382336-4384348 transcript_region:SL2.40ch01:4382336..4384348- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00017893g0006.1 protein AED:0.34 eAED:0.55 QI:0|0|0|1|0|0|3|0|136; (*ITAG) Solyc10g049530.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00017893g0005.1 protein AED:0.45 eAED:0.46 QI:0|0|0|0.5|0|0|2|0|107; (*ITAG) Solyc10g049530.1.1 (e_value=7e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00017893g0007.1 protein AED:0.42 eAED:0.63 QI:0|0|0|1|0|0|2|0|72 NbS00013335g0004.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0|0|2|0|107 NbS00013335g0003.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|76; (*TAIR) AT4G09500.2 (e_value=3e-13) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:6018250-6019578 FORWARD LENGTH=442; NbS00015598g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|591; (*GB) gi|357469763|ref|XP_003605166.1| (e_value=0.0) Peptide transporter [Medicago truncatula];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc01g091180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76626787-76631774 transcript_region:SL2.40ch01:76626787..76631774- go_terms:GO:0042936,GO:0015112 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936,GO:0015112 NbS00015598g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|310|444; (*GB) gi|255541240|ref|XP_002511684.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45260.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00015598g0010.1 protein AED:0.32 eAED:0.37 QI:0|0.33|0.25|0.75|1|0.5|4|264|318; (*GB) gi|224067710|ref|XP_002302529.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02020.1 (e_value=6e-54) | Symbols: | nitroreductase family protein | chr1:352842-354845 REVERSE LENGTH=642;; (*ITAG) Solyc01g091130.2.1 (e_value=6e-92) genomic_reference:SL2.40ch01 gene_region:76596420-76600448 transcript_region:SL2.40ch01:76596420..76600448- go_terms:GO:0016657 functional_description:"Nitroreductase (AHRD V1 ***- Q2WAQ2_MAGSA); contains Interpro domain(s) IPR000415 Nitroreductase-like "; GO:0016657 NbS00015598g0002.1 protein AED:0.07 eAED:0.08 QI:277|0.66|0.71|1|0.83|0.71|7|660|192; (*GB) gi|350538013|ref|NP_001234578.1| (e_value=2e-127) arginase 1 [Solanum lycopersicum];; (*SWP) sp|P46637|ARGI1_ARATH (e_value=4e-110) Arginase OS=Arabidopsis thaliana GN=At4g08900 PE=2 SV=1;; (*TAIR) AT4G08900.1 (e_value=3e-111) | Symbols: | arginase | chr4:5703499-5705180 FORWARD LENGTH=342;; (*ITAG) Solyc01g091160.2.1 (e_value=4e-130) genomic_reference:SL2.40ch01 gene_region:76612669-76617028 transcript_region:SL2.40ch01:76612669..76617028+ go_terms:GO:0046872 functional_description:"Agmatinase (AHRD V1 ***- Q1IPT1_ACIBL); contains Interpro domain(s) IPR006035 Ureohydrolase "; GO:0046872 NbS00015598g0014.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|2|0|371; (*GB) gi|357469791|ref|XP_003605180.1| (e_value=3e-149) hypothetical protein MTR_4g025130 [Medicago truncatula];; (*TAIR) AT1G02020.2 (e_value=1e-127) | Symbols: | nitroreductase family protein | chr1:353214-354845 REVERSE LENGTH=543;; (*ITAG) Solyc01g091130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76596420-76600448 transcript_region:SL2.40ch01:76596420..76600448- go_terms:GO:0016657 functional_description:"Nitroreductase (AHRD V1 ***- Q2WAQ2_MAGSA); contains Interpro domain(s) IPR000415 Nitroreductase-like "; GO:0016657 NbS00014367g0011.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|420; (*GB) gi|255545850|ref|XP_002513985.1| (e_value=4e-74) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=4e-67) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=3e-68) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc04g074810.2.1 (e_value=5e-107) genomic_reference:SL2.40ch04 gene_region:58316431-58320023 transcript_region:SL2.40ch04:58316431..58320023- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014367g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.8|1|0.5|0.6|5|529|269; (*GB) gi|225432108|ref|XP_002262955.1| (e_value=1e-49) PREDICTED: uncharacterized protein LOC100251180 [Vitis vinifera];; (*SWP) sp|Q75UQ2|CFDP1_RAT (e_value=6e-13) Craniofacial development protein 1 OS=Rattus norvegicus GN=Cfdp1 PE=2 SV=1;; (*TAIR) AT5G30490.2 (e_value=5e-40) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr5:11612199-11614271 FORWARD LENGTH=236;; (*ITAG) Solyc04g074800.2.1 (e_value=6e-64) genomic_reference:SL2.40ch04 gene_region:58301851-58303918 transcript_region:SL2.40ch04:58301851..58303918- functional_description:"Craniofacial development protein 1 (AHRD V1 ***- B6T6E2_MAIZE); contains Interpro domain(s) IPR011421 Craniofacial development protein 1/Bucentaur "; NbS00014367g0009.1 protein AED:0.19 eAED:0.42 QI:0|0|0|0.5|1|1|4|0|123 NbS00014367g0004.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|141 NbS00032793g0003.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.33|0.5|0.66|3|0|104; (*GB) gi|125571314|gb|EAZ12829.1| (e_value=3e-21) hypothetical protein OsJ_02750 [Oryza sativa Japonica Group];; (*TAIR) AT2G18360.1 (e_value=3e-19) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:7976848-7979221 REVERSE LENGTH=313;; (*ITAG) Solyc01g109720.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:88365648-88367749 transcript_region:SL2.40ch01:88365648..88367749- go_terms:GO:0003824 functional_description:"Hydrolase-like (AHRD V1 ***- Q5VNP5_ORYSJ); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00032793g0002.1 protein AED:0.24 eAED:0.44 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|224105383|ref|XP_002313792.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT2G18360.1 (e_value=1e-17) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:7976848-7979221 REVERSE LENGTH=313;; (*ITAG) Solyc01g109720.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:88365648-88367749 transcript_region:SL2.40ch01:88365648..88367749- go_terms:GO:0003824 functional_description:"Hydrolase-like (AHRD V1 ***- Q5VNP5_ORYSJ); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00003323g0009.1 protein AED:0.01 eAED:0.01 QI:224|1|1|1|0|0.66|3|257|166; (*GB) gi|359479639|ref|XP_003632312.1| (e_value=4e-54) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=6e-19) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=6e-45) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g082270.2.1 (e_value=1e-78) genomic_reference:SL2.40ch09 gene_region:63453742-63455274 transcript_region:SL2.40ch09:63453742..63455274- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9SFJ1_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00003323g0004.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|107; (*GB) gi|225432710|ref|XP_002278864.1| (e_value=7e-44) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*TAIR) AT3G22560.1 (e_value=2e-32) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175;; (*ITAG) Solyc01g098010.2.1 (e_value=3e-38) genomic_reference:SL2.40ch01 gene_region:80401808-80402876 transcript_region:SL2.40ch01:80401808..80402876- go_terms:GO:0008152 functional_description:"Acetyltransferase GNAT family protein expressed (AHRD V1 ***- Q852L7_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00003323g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|224111148|ref|XP_002315763.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P05332|YP20_BACLI (e_value=1e-15) Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis GN=p20 PE=4 SV=1;; (*TAIR) AT2G32030.1 (e_value=1e-34) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc09g082240.2.1 (e_value=3e-49) genomic_reference:SL2.40ch09 gene_region:63446343-63448369 transcript_region:SL2.40ch09:63446343..63448369+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 *-** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00003323g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|224111148|ref|XP_002315763.1| (e_value=8e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|P05332|YP20_BACLI (e_value=5e-18) Uncharacterized N-acetyltransferase p20 OS=Bacillus licheniformis GN=p20 PE=4 SV=1;; (*TAIR) AT2G32030.1 (e_value=2e-70) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc09g082230.1.1 (e_value=8e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:63444405-63444959 transcript_region:SL2.40ch09:63444405..63444959+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 **** A6CNK1_9BACI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00024178g0012.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.2|0.8|0.5|0.6|5|227|190 NbS00024178g0011.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|0|0.66|3|0|123; (*ITAG) Solyc06g008150.2.1 (e_value=2e-23) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00023313g0028.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|0|2|140|230; (*GB) gi|224100893|ref|XP_002312056.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12345.1 (e_value=2e-42) | Symbols: | unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:3930333-3930893 REVERSE LENGTH=186;; (*ITAG) Solyc04g010190.1.1 (e_value=4e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:3508288-3508857 transcript_region:SL2.40ch04:3508288..3508857- functional_description:"Immunophilin-like (AHRD V1 ***- Q67VQ6_ORYSJ)"; NbS00023313g0029.1 protein AED:0.27 eAED:0.41 QI:0|0|0|0.66|0|0.33|3|0|390; (*GB) gi|147789724|emb|CAN67401.1| (e_value=3e-174) hypothetical protein VITISV_025967 [Vitis vinifera];; (*SWP) sp|Q9SR00|PP213_ARATH (e_value=7e-156) Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1;; (*TAIR) AT3G04760.1 (e_value=5e-157) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:1303884-1305692 REVERSE LENGTH=602;; (*ITAG) Solyc08g076680.1.1 (e_value=1e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57776442-57778604 transcript_region:SL2.40ch08:57776442..57778604- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023313g0025.1 protein AED:0.05 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|183; (*GB) gi|77416927|gb|ABA81859.1| (e_value=3e-111) unknown [Solanum tuberosum];; (*SWP) sp|Q16594|TAF9_HUMAN (e_value=2e-38) Transcription initiation factor TFIID subunit 9 OS=Homo sapiens GN=TAF9 PE=1 SV=1;; (*TAIR) AT1G54140.1 (e_value=4e-83) | Symbols: TAFII21, TAF9 | TATA binding protein associated factor 21kDa subunit | chr1:20214076-20214869 REVERSE LENGTH=183;; (*ITAG) Solyc04g010090.2.1 (e_value=5e-101) genomic_reference:SL2.40ch04 gene_region:3391686-3396958 transcript_region:SL2.40ch04:3391686..3396958+ go_terms:GO:0016251 functional_description:"Transcription initiation factor TFIID subunit 9B (AHRD V1 **** B6T3B6_MAIZE); contains Interpro domain(s) IPR003162 Transcription factor TAFII-31 "; GO:0016251 NbS00023313g0035.1 protein AED:0.17 eAED:0.17 QI:0|0.91|0.92|0.92|0.91|0.84|13|360|506; (*GB) gi|350528639|gb|AEQ28761.1| (e_value=0.0) calcium ion binding protein [Prunus salicina];; (*SWP) sp|Q06190|P2R3A_HUMAN (e_value=1e-109) Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Homo sapiens GN=PPP2R3A PE=1 SV=1;; (*TAIR) AT5G28850.2 (e_value=0.0) | Symbols: | Calcium-binding EF-hand family protein | chr5:10877360-10881278 REVERSE LENGTH=536;; (*ITAG) Solyc04g010070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3365037-3378848 transcript_region:SL2.40ch04:3365037..3378848+ go_terms:GO:0005509 functional_description:"Protein phosphatase 2A regulatory subunit B&apos-like protein (AHRD V1 ***- Q56WJ0_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00023313g0005.1 protein AED:0.16 eAED:0.19 QI:233|0.5|0.27|1|1|1|11|124|710; (*GB) gi|224123564|ref|XP_002319111.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A2RV01|ATBD4_DANRE (e_value=1e-66) ATP-binding domain-containing protein 4 OS=Danio rerio GN=atpbd4 PE=2 SV=1;; (*TAIR) AT3G04480.1 (e_value=0.0) | Symbols: | endoribonucleases | chr3:1193988-1197320 REVERSE LENGTH=718;; (*ITAG) Solyc04g010080.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3379820-3388745 transcript_region:SL2.40ch04:3379820..3388745+ go_terms:GO:0004521 functional_description:"ATP-binding domain-containing protein 4 (AHRD V1 *--- C1C352_9MAXI); contains Interpro domain(s) IPR002761 Protein of unknown function DUF71, ATP-binding region "; GO:0004521 NbS00023313g0008.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|603; (*GB) gi|359488082|ref|XP_002266772.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Vitis vinifera];; (*SWP) sp|Q9FRS4|PPR22_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1;; (*TAIR) AT1G08610.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:2733788-2735467 REVERSE LENGTH=559;; (*ITAG) Solyc04g010050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3352129-3356470 transcript_region:SL2.40ch04:3352129..3356470+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIT7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00023313g0031.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.71|1|0.66|0.71|7|0|425; (*GB) gi|225448765|ref|XP_002281688.1| (e_value=0.0) PREDICTED: macrophage erythroblast attacher [Vitis vinifera];; (*SWP) sp|Q7SXR3|MAEA_DANRE (e_value=5e-92) Macrophage erythroblast attacher OS=Danio rerio GN=maea PE=2 SV=2;; (*TAIR) AT3G55070.1 (e_value=0.0) | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr3:20408377-20410887 FORWARD LENGTH=418;; (*ITAG) Solyc04g010120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3406497-3416361 transcript_region:SL2.40ch04:3406497..3416361- go_terms:GO:0003779 functional_description:"Macrophage erythroblast attacher (AHRD V1 **-- B6TF70_MAIZE); contains Interpro domain(s) IPR013144 Ran binding protein-like, CRA domain "; GO:0003779 NbS00023313g0023.1 protein AED:0.43 eAED:0.80 QI:135|0.4|0|1|0.6|0.33|6|0|1328; (*GB) gi|224098176|ref|XP_002311130.1| (e_value=2e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13590.1 (e_value=1e-19) | Symbols: | unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | chr5:4374718-4378647 REVERSE LENGTH=1168;; (*ITAG) Solyc04g010180.2.1 (e_value=2e-73) genomic_reference:SL2.40ch04 gene_region:3502067-3502725 transcript_region:SL2.40ch04:3502067..3502725+ functional_description:"Unknown Protein (AHRD V1)"; NbS00060553g0007.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.6|1|0.75|0.8|5|549|236; (*GB) gi|255580004|ref|XP_002530836.1| (e_value=1e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26840.1 (e_value=1e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1); Has 835 Blast hits to 835 proteins in 26 species: Archae - 0; Bacteria - 25; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 2; Other Eukaryotes - 768 (source: NCBI BLink). | chr2:11447346-11448871 REVERSE LENGTH=273;; (*ITAG) Solyc01g008700.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:2746555-2751492 transcript_region:SL2.40ch01:2746555..2751492- functional_description:"cDNA clone 001-102-C05 full insert sequence (AHRD V1 **-- B7E7M9_ORYSJ)"; NbS00001563g0013.1 protein AED:0.00 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|297; (*GB) gi|225451038|ref|XP_002284939.1| (e_value=4e-145) PREDICTED: UPF0603 protein At1g54780, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ZVL6|U603_ARATH (e_value=1e-132) UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1;; (*TAIR) AT1G54780.1 (e_value=8e-134) | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protein | chr1:20439533-20440953 FORWARD LENGTH=285;; (*ITAG) Solyc01g098640.2.1 (e_value=4e-179) genomic_reference:SL2.40ch01 gene_region:80853972-80856857 transcript_region:SL2.40ch01:80853972..80856857+ functional_description:"UPF0603 protein At1g54780, chloroplastic (AHRD V1 **-- U603_ARATH); contains Interpro domain(s) IPR007621 Protein of unknown function DUF477 "; NbS00001563g0006.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|932; (*GB) gi|359481300|ref|XP_002269481.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-97) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT4G13920.1 (e_value=8e-115) | Symbols: AtRLP50, RLP50 | receptor like protein 50 | chr4:8043861-8046536 FORWARD LENGTH=891;; (*ITAG) Solyc01g098690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00001563g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.91|0.76|0.92|0.91|0.92|13|0|423; (*GB) gi|359487776|ref|XP_002284915.2| (e_value=0.0) PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9ASR4|BCAL2_ARATH (e_value=0.0) Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1;; (*TAIR) AT5G27410.2 (e_value=0.0) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:9676362-9682468 FORWARD LENGTH=936;; (*ITAG) Solyc01g098700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80878024-80889329 transcript_region:SL2.40ch01:80878024..80889329+ go_terms:GO:0008152 functional_description:"Branched-chain amino acid aminotransferase-like protein (AHRD V1 ***- Q84L60_CICAR); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00001563g0019.1 protein AED:0.19 eAED:0.31 QI:0|0|0|1|0|0|7|0|238; (*GB) gi|224123238|ref|XP_002319029.1| (e_value=8e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3ECP6|GDL22_ARATH (e_value=2e-43) GDSL esterase/lipase At1g54790 OS=Arabidopsis thaliana GN=At1g54790 PE=2 SV=1;; (*TAIR) AT1G54790.1 (e_value=1e-44) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:20441124-20443997 REVERSE LENGTH=382;; (*ITAG) Solyc01g098650.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:80856739-80860452 transcript_region:SL2.40ch01:80856739..80860452- go_terms:GO:0004560,GO:0004091 functional_description:"GDSL esterase/lipase At1g54790 (AHRD V1 ***- GDL22_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004560,GO:0004091 NbC26279724g0002.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.5|1|1|2|0|162 NbS00030721g0005.1 protein AED:0.13 eAED:0.14 QI:307|0.84|0.85|1|0.92|0.85|14|155|874; (*GB) gi|19570247|dbj|BAB86283.1| (e_value=0.0) kinesin-like protein NACK1 [Nicotiana tabacum];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=8e-64) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT1G18370.1 (e_value=0.0) | Symbols: HIK, ATNACK1, NACK1 | ATP binding microtubule motor family protein | chr1:6319732-6323820 REVERSE LENGTH=974;; (*ITAG) Solyc03g119220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61925706-61931501 transcript_region:SL2.40ch03:61925706..61931501- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L5J2_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00030136g0009.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|359; (*GB) gi|388499148|gb|AFK37640.1| (e_value=7e-129) unknown [Lotus japonicus];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=3e-58) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G55290.1 (e_value=2e-122) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:20626208-20627397 REVERSE LENGTH=361;; (*ITAG) Solyc11g072110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52455435-52457149 transcript_region:SL2.40ch11:52455435..52457149- go_terms:GO:0016491 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00003840g0014.1 protein AED:0.03 eAED:0.14 QI:0|0|0|1|0.5|0.33|3|0|310; (*GB) gi|255574752|ref|XP_002528284.1| (e_value=8e-158) phospholipase C, putative [Ricinus communis];; (*TAIR) AT4G38690.1 (e_value=3e-151) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:18074743-18075699 REVERSE LENGTH=318;; (*ITAG) Solyc01g111250.2.1 (e_value=5e-173) genomic_reference:SL2.40ch01 gene_region:89325238-89326603 transcript_region:SL2.40ch01:89325238..89326603+ go_terms:GO:0023034,GO:0006629 functional_description:"Phosphatidylinositol-specific phospholipase c (AHRD V1 *-*- B9UXN2_LISMO); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00003840g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=1e-114) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G65870.1 (e_value=4e-58) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189;; (*ITAG) Solyc10g055200.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51957093-51957677 transcript_region:SL2.40ch10:51957093..51957677+ functional_description:"Disease resistance response (AHRD V1 ***- D7KM73_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00003840g0015.1 protein AED:0.13 eAED:0.13 QI:0|0.25|0.2|1|0|0|5|208|621; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=6e-116) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=5e-117) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00003840g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0|2|558|227; (*GB) gi|121631|sp|P27484.1|GRP2_NICSY (e_value=5e-31) RecName: Full=Glycine-rich protein 2;; (*SWP) sp|P27484|GRP2_NICSY (e_value=1e-32) Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1;; (*TAIR) AT4G38680.1 (e_value=9e-26) | Symbols: GRP2, CSDP2, CSP2, ATCSP2 | glycine rich protein 2 | chr4:18072240-18072851 REVERSE LENGTH=203;; (*ITAG) Solyc10g055250.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51991131-51991640 transcript_region:SL2.40ch10:51991131..51991640- go_terms:GO:0003676,GO:0008270,GO:0006355 functional_description:"Cold shock protein-1 (AHRD V1 *-*- Q8LPA7_WHEAT); contains Interpro domain(s) IPR002059 Cold-shock protein, DNA-binding "; GO:0003676,GO:0008270,GO:0006355 NbS00003723g0004.1 protein AED:0.52 eAED:0.61 QI:0|0|0|1|0|0|3|0|193; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-21) hypothetical protein [Nicotiana tabacum]; NbS00006059g0002.1 protein AED:0.14 eAED:0.16 QI:0|0|0|0.75|1|1|4|0|386; (*GB) gi|164685598|gb|ABY66745.1| (e_value=0.0) atp1, partial (mitochondrion) [Garrya elliptica];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=0.0) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=0.0) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc00g042130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00045650g0104.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0.5|0.66|3|0|177 NbS00045650g0105.1 protein AED:0.41 eAED:0.48 QI:0|0|0|1|0|0|5|0|182 NbS00045650g0106.1 protein AED:0.46 eAED:0.83 QI:0|0|0|1|0|0|3|0|84 NbS00061463g0003.1 protein AED:0.11 eAED:0.15 QI:126|1|0.5|1|0|0|2|0|124; (*GB) gi|224127148|ref|XP_002329412.1| (e_value=4e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S8I4|EPF1_ARATH (e_value=3e-33) Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana GN=EPF1 PE=2 SV=1;; (*TAIR) AT2G20875.1 (e_value=2e-34) | Symbols: EPF1 | epidermal patterning factor 1 | chr2:8983179-8983579 REVERSE LENGTH=104;; (*ITAG) Solyc12g010720.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3641590-3641784 transcript_region:SL2.40ch12:3641590..3641784+ functional_description:"Protein EPIDERMAL PATTERNING FACTOR 1 (AHRD V1 ***- EPF1_ARATH)"; NbS00010660g0001.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|460; (*GB) gi|255561975|ref|XP_002521996.1| (e_value=4e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G04540.1 (e_value=9e-38) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1237256-1239061 FORWARD LENGTH=601;; (*ITAG) Solyc04g050130.1.1 (e_value=2e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:44740370-44741488 transcript_region:SL2.40ch04:44740370..44741488+ functional_description:"C2 domain-containing protein (AHRD V1 ***- D7LFS6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00016466g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|1|5|0|637; (*GB) gi|7652766|gb|AAB96765.2| (e_value=0.0) ethylene receptor ERS homolog [Nicotiana tabacum];; (*SWP) sp|Q9XH57|ETR2_PELHO (e_value=0.0) Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1;; (*TAIR) AT2G40940.1 (e_value=0.0) | Symbols: ERS1, ERS | ethylene response sensor 1 | chr2:17084635-17086819 REVERSE LENGTH=613;; (*ITAG) Solyc09g075440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62631866-62639953 transcript_region:SL2.40ch09:62631866..62639953- go_terms:GO:0051740 functional_description:"Ethylene receptor (AHRD V1 **** Q41341_SOLLC); contains Interpro domain(s) IPR005467 Signal transduction histidine kinase, core "; GO:0051740 NbS00014732g0012.1 protein AED:0.13 eAED:0.18 QI:0|1|0|1|1|1|2|0|294; (*GB) gi|225433322|ref|XP_002282518.1| (e_value=3e-45) PREDICTED: uncharacterized protein LOC100251153 [Vitis vinifera];; (*TAIR) AT2G33250.1 (e_value=6e-11) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04310.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14097454-14098678 FORWARD LENGTH=299;; (*ITAG) Solyc09g091010.2.1 (e_value=7e-69) genomic_reference:SL2.40ch09 gene_region:65712121-65714699 transcript_region:SL2.40ch09:65712121..65714699- functional_description:"Unknown Protein (AHRD V1)"; NbS00014732g0009.1 protein AED:0.19 eAED:0.19 QI:318|0.83|0.76|1|0.66|0.61|13|433|817; (*GB) gi|296088263|emb|CBI35771.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04140.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr1:1075984-1080321 REVERSE LENGTH=790;; (*ITAG) Solyc09g091020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65716313-65723844 transcript_region:SL2.40ch09:65716313..65723844- go_terms:GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND80_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00034227g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.71|0.73|1|0.71|0.73|15|0|503; (*GB) gi|297744550|emb|CBI37812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=3e-36) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G38470.1 (e_value=2e-169) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc12g094410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00034227g0006.1 protein AED:0.30 eAED:0.30 QI:661|0.33|0.75|1|0.33|0.25|4|179|92 NbS00037743g0003.1 protein AED:0.10 eAED:0.10 QI:115|1|1|1|1|1|6|182|242; (*GB) gi|357477153|ref|XP_003608862.1| (e_value=1e-145) Adenylate kinase B [Medicago truncatula];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=7e-147) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G63400.1 (e_value=3e-137) | Symbols: ADK1 | adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246;; (*ITAG) Solyc05g014980.2.1 (e_value=1e-156) genomic_reference:SL2.40ch05 gene_region:9188640-9193694 transcript_region:SL2.40ch05:9188640..9193694- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00017480g0006.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0|0.75|1|1|4|0|334; (*GB) gi|321268087|gb|ADW78846.1| (e_value=9e-167) galactinol synthase [Solanum tuberosum];; (*TAIR) AT2G47180.1 (e_value=8e-122) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc01g100830.1.1 (e_value=1e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82512961-82514071 transcript_region:SL2.40ch01:82512961..82514071+ go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- Q947G8_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00017480g0014.1 protein AED:0.23 eAED:0.23 QI:262|0.85|0.87|1|0.71|0.5|8|388|636; (*GB) gi|359487679|ref|XP_002277312.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254513 [Vitis vinifera];; (*TAIR) AT1G56560.1 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr1:21192593-21194948 FORWARD LENGTH=616;; (*ITAG) Solyc01g100810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82498414-82504152 transcript_region:SL2.40ch01:82498414..82504152- go_terms:GO:0004564 functional_description:"Neutral invertase (AHRD V1 ***- A7LH71_VITVI); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0004564 NbS00017480g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.57|0.85|0.83|1|7|115|389; (*GB) gi|225450531|ref|XP_002281428.1| (e_value=0.0) PREDICTED: AP-3 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q5R478|AP3M1_PONAB (e_value=1e-113) AP-3 complex subunit mu-1 OS=Pongo abelii GN=AP3M1 PE=2 SV=1;; (*TAIR) AT1G56590.1 (e_value=0.0) | Symbols: ZIP4 | Clathrin adaptor complexes medium subunit family protein | chr1:21202250-21204697 REVERSE LENGTH=415;; (*ITAG) Solyc01g100820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82505920-82511827 transcript_region:SL2.40ch01:82505920..82511827- go_terms:GO:0030276 functional_description:"AP-3 complex subunit mu-2 (AHRD V1 ***- B6TBI2_MAIZE); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00017480g0016.1 protein AED:0.27 eAED:0.28 QI:194|1|0.25|1|0|0|4|0|166; (*GB) gi|357521045|ref|XP_003630811.1| (e_value=1e-89) Trafficking protein particle complex subunit [Medicago truncatula];; (*SWP) sp|Q54UU1|TPPC4_DICDI (e_value=5e-40) Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1;; (*TAIR) AT5G02280.1 (e_value=1e-89) | Symbols: | SNARE-like superfamily protein | chr5:469377-470129 FORWARD LENGTH=141;; (*ITAG) Solyc01g100840.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:82514405-82519439 transcript_region:SL2.40ch01:82514405..82519439- go_terms:GO:0005515 functional_description:"Trafficking protein particle complex subunit 4 (AHRD V1 ***- B6U8Z1_MAIZE); contains Interpro domain(s) IPR007233 Sybindin-like protein "; GO:0005515 NbS00022100g0004.1 protein AED:0.03 eAED:0.03 QI:103|1|1|1|0|0|2|303|787; (*GB) gi|225428729|ref|XP_002281969.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g15820-like [Vitis vinifera];; (*SWP) sp|Q9XIL5|PP154_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g15820 OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3;; (*TAIR) AT2G15820.1 (e_value=0.0) | Symbols: OTP51 | endonucleases | chr2:6888734-6891360 REVERSE LENGTH=849;; (*ITAG) Solyc11g066850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49736054-49739917 transcript_region:SL2.40ch11:49736054..49739917+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KRL4_ARALY); contains Interpro domain(s) IPR004860 LAGLIDADG DNA endonuclease "; GO:0004519 NbS00051706g0013.1 protein AED:0.12 eAED:0.13 QI:0|0.85|0.75|1|1|1|8|0|486; (*GB) gi|359475982|ref|XP_002280120.2| (e_value=0.0) PREDICTED: endoglucanase 16-like [Vitis vinifera];; (*SWP) sp|Q8VYG3|GUN16_ARATH (e_value=0.0) Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=0.0) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00051706g0014.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|0.66|0.75|4|0|312; (*GB) gi|225440211|ref|XP_002283648.1| (e_value=0.0) PREDICTED: isoflavone reductase homolog [Vitis vinifera];; (*SWP) sp|P52581|IFRH_LUPAL (e_value=2e-162) Isoflavone reductase homolog OS=Lupinus albus PE=2 SV=1;; (*TAIR) AT1G32100.1 (e_value=9e-139) | Symbols: ATPRR1, PRR1 | pinoresinol reductase 1 | chr1:11546472-11547953 REVERSE LENGTH=317;; (*ITAG) Solyc06g066160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37864032-37866173 transcript_region:SL2.40ch06:37864032..37866173- go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** Q4R0I0_9ROSI); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00051706g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|195542260|gb|AAR87850.2| (e_value=3e-83) fertilization-related kinase 1 [Solanum chacoense];; (*SWP) sp|Q60806|PLK3_MOUSE (e_value=2e-23) Serine/threonine-protein kinase PLK3 OS=Mus musculus GN=Plk3 PE=1 SV=2;; (*TAIR) AT4G36950.1 (e_value=2e-47) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc06g065790.1.1 (e_value=2e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00051706g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|195542260|gb|AAR87850.2| (e_value=7e-20) fertilization-related kinase 1 [Solanum chacoense];; (*TAIR) AT5G67080.1 (e_value=3e-13) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065790.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002711g0003.1 protein AED:0.12 eAED:0.12 QI:173|1|1|1|1|1|2|263|402; (*GB) gi|225449244|ref|XP_002276341.1| (e_value=3e-114) PREDICTED: transcription factor MYB104 [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=2e-45) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT3G55730.1 (e_value=2e-96) | Symbols: MYB109, AtMYB109 | myb domain protein 109 | chr3:20682114-20683963 REVERSE LENGTH=399;; (*ITAG) Solyc05g052850.2.1 (e_value=9e-137) genomic_reference:SL2.40ch05 gene_region:62183339-62186780 transcript_region:SL2.40ch05:62183339..62186780- go_terms:GO:0003700 functional_description:"MYB transcription factor-like protein (AHRD V1 **** Q9LDW5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00030183g0008.1 protein AED:0.09 eAED:0.09 QI:491|0.5|0.33|1|0|0|3|0|817; (*GB) gi|15418709|gb|AAG31013.1| (e_value=3e-144) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=2e-99) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=9e-60) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=1e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00030183g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|0.5|0.66|3|0|436; (*GB) gi|297743652|emb|CBI36535.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W4A5|APO2_ARATH (e_value=4e-179) APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1;; (*TAIR) AT5G57930.2 (e_value=2e-180) | Symbols: APO2 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:23454690-23456354 FORWARD LENGTH=443;; (*ITAG) Solyc07g005570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:451950-457148 transcript_region:SL2.40ch07:451950..457148- functional_description:"APO protein 2, chloroplastic (AHRD V1 ***- APO2_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00038923g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|0.5|2|272|144; (*ITAG) Solyc01g056620.2.1 (e_value=5e-48) genomic_reference:SL2.40ch01 gene_region:47922648-47930463 transcript_region:SL2.40ch01:47922648..47930463+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- B5BUY7_ARATH); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00038923g0017.1 protein AED:0.23 eAED:0.26 QI:0|0.71|0.37|1|0.85|0.75|8|0|426; (*GB) gi|157042755|gb|ABV02029.1| (e_value=2e-180) sucrose sythase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P49039|SUS2_SOLTU (e_value=2e-178) Sucrose synthase OS=Solanum tuberosum PE=3 SV=1;; (*TAIR) AT5G20830.2 (e_value=4e-167) | Symbols: SUS1, ASUS1, atsus1 | sucrose synthase 1 | chr5:7050599-7054032 REVERSE LENGTH=808;; (*ITAG) Solyc07g042520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53140157-53143939 transcript_region:SL2.40ch07:53140157..53143939- go_terms:GO:0016157 functional_description:"Sucrose synthase 4 (AHRD V1 **** Q7Y078_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00038923g0007.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|227; (*GB) gi|38425095|gb|AAR19769.1| (e_value=3e-56) sucrose synthase [Beta vulgaris];; (*SWP) sp|P49039|SUS2_SOLTU (e_value=3e-56) Sucrose synthase OS=Solanum tuberosum PE=3 SV=1;; (*TAIR) AT3G43190.1 (e_value=5e-56) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc07g042520.2.1 (e_value=2e-74) genomic_reference:SL2.40ch07 gene_region:53140157-53143939 transcript_region:SL2.40ch07:53140157..53143939- go_terms:GO:0016157 functional_description:"Sucrose synthase 4 (AHRD V1 **** Q7Y078_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00038923g0002.1 protein AED:0.06 eAED:0.06 QI:419|0.71|0.62|1|0.71|0.75|8|0|760; (*GB) gi|224081875|ref|XP_002306511.1| (e_value=0.0) endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa];; (*SWP) sp|P0ABB8|ATMA_ECOLI (e_value=4e-169) Magnesium-transporting ATPase, P-type 1 OS=Escherichia coli (strain K12) GN=mgtA PE=1 SV=1;; (*TAIR) AT5G57350.2 (e_value=3e-40) | Symbols: HA3 | H(+)-ATPase 3 | chr5:23231208-23236381 REVERSE LENGTH=949;; (*ITAG) Solyc03g123890.2.1 (e_value=4e-40) genomic_reference:SL2.40ch03 gene_region:64626300-64643322 transcript_region:SL2.40ch03:64626300..64643322- go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00038923g0012.1 protein AED:0.15 eAED:0.15 QI:22|1|0|1|1|1|2|0|228; (*GB) gi|357463265|ref|XP_003601914.1| (e_value=1e-83) hypothetical protein MTR_3g086740 [Medicago truncatula];; (*TAIR) AT5G65340.1 (e_value=2e-70) | Symbols: | Protein of unknown function, DUF617 | chr5:26113684-26114445 REVERSE LENGTH=253;; (*ITAG) Solyc04g014230.1.1 (e_value=3e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4530800-4532108 transcript_region:SL2.40ch04:4530800..4532108- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00048059g0006.1 protein AED:0.00 eAED:0.00 QI:60|1|1|1|0|0.5|2|55|165; (*GB) gi|351723415|ref|NP_001237022.1| (e_value=4e-50) uncharacterized protein LOC100305555 precursor [Glycine max];; (*SWP) sp|Q39131|LAML_ARATH (e_value=2e-27) Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1;; (*TAIR) AT5G15350.1 (e_value=2e-28) | Symbols: ENODL17, AtENODL17 | early nodulin-like protein 17 | chr5:4985184-4986154 REVERSE LENGTH=172;; (*ITAG) Solyc12g042580.1.1 (e_value=2e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:43386346-43387582 transcript_region:SL2.40ch12:43386346..43387582+ go_terms:GO:0009055 functional_description:"Blue copper-like protein (AHRD V1 *-*- B8Y8A0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00048059g0009.1 protein AED:0.10 eAED:0.10 QI:261|0.7|0.72|1|0.6|0.72|11|284|360; (*GB) gi|224075718|ref|XP_002304734.1| (e_value=2e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZ53|P2C60_ARATH (e_value=1e-131) Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1;; (*TAIR) AT4G31860.1 (e_value=8e-133) | Symbols: | Protein phosphatase 2C family protein | chr4:15406685-15408589 REVERSE LENGTH=357;; (*ITAG) Solyc12g042570.1.1 (e_value=4e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43370211-43384042 transcript_region:SL2.40ch12:43370211..43384042+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase (AHRD V1 **** C1MNQ4_MICPS); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00061234g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|736; (*GB) gi|225438557|ref|XP_002276001.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Vitis vinifera];; (*SWP) sp|Q9SVA5|PP357_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1;; (*TAIR) AT4G39530.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18374736-18377240 REVERSE LENGTH=834;; (*ITAG) Solyc01g006920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1489941-1492756 transcript_region:SL2.40ch01:1489941..1492756+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KZF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00032425g0012.1 protein AED:0.33 eAED:0.39 QI:91|0.8|0.5|1|0.6|0.5|6|0|313; (*GB) gi|224107905|ref|XP_002314649.1| (e_value=4e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9NQZ5|STAR7_HUMAN (e_value=9e-13) StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2;; (*TAIR) AT4G14500.1 (e_value=7e-141) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:8334391-8337022 FORWARD LENGTH=433;; (*ITAG) Solyc06g053790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33139221-33147721 transcript_region:SL2.40ch06:33139221..33147721+ functional_description:"Membrane related protein-like (AHRD V1 **-- Q9LS84_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00032425g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|0|0|2|1096|535; (*GB) gi|147798057|emb|CAN60703.1| (e_value=0.0) hypothetical protein VITISV_003522 [Vitis vinifera];; (*SWP) sp|Q55BF2|NMD3_DICDI (e_value=3e-156) 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1;; (*TAIR) AT2G03820.1 (e_value=0.0) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc06g053800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33148340-33149857 transcript_region:SL2.40ch06:33148340..33149857- go_terms:GO:0005515,GO:0043023 functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; GO:0005515,GO:0043023 NbS00016427g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|533; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=5e-120) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-119) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc04g080120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61972908-61974746 transcript_region:SL2.40ch04:61972908..61974746- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00016427g0018.1 protein AED:0.15 eAED:0.15 QI:181|0.77|0.7|1|0.55|0.6|10|93|363; (*GB) gi|255543625|ref|XP_002512875.1| (e_value=4e-144) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G14020.1 (e_value=2e-113) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr5:4523730-4525819 REVERSE LENGTH=401;; (*ITAG) Solyc02g093960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49218739-49221091 transcript_region:SL2.40ch02:49218739..49221091- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 **-- Q9FFX3_ARATH)"; NbS00016427g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|69; (*GB) gi|224141267|ref|XP_002323996.1| (e_value=4e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40460.1 (e_value=3e-11) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202465-16202803 FORWARD LENGTH=112;; (*ITAG) Solyc02g067810.1.1 (e_value=1e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32502384-32502698 transcript_region:SL2.40ch02:32502384..32502698+ functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00016427g0019.1 protein AED:0.09 eAED:0.09 QI:145|0.63|0.43|0.91|0.68|0.78|23|0|2761; (*ITAG) Solyc02g086460.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:43702622-43720134 transcript_region:SL2.40ch02:43702622..43720134+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016427g0003.1 protein AED:0.20 eAED:0.22 QI:0|0.42|0.25|1|1|1|8|0|469; (*GB) gi|359487344|ref|XP_002263663.2| (e_value=3e-65) PREDICTED: sister chromatid cohesion 1 protein 3-like [Vitis vinifera];; (*SWP) sp|Q9FQ19|SCC13_ARATH (e_value=7e-36) Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana GN=SYN3 PE=2 SV=2;; (*TAIR) AT3G59550.1 (e_value=5e-37) | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like family protein | chr3:21997262-22000496 FORWARD LENGTH=693;; (*ITAG) Solyc01g086690.2.1 (e_value=1e-153) genomic_reference:SL2.40ch01 gene_region:73405126-73411225 transcript_region:SL2.40ch01:73405126..73411225- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00016427g0008.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|224141267|ref|XP_002323996.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40460.1 (e_value=5e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202465-16202803 FORWARD LENGTH=112;; (*ITAG) Solyc02g086450.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43695656-43695973 transcript_region:SL2.40ch02:43695656..43695973- functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00000046g0007.1 protein AED:0.08 eAED:0.11 QI:26|0.5|0|1|0.5|0.33|3|0|328; (*GB) gi|296084195|emb|CBI24583.3| (e_value=5e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=5e-100) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G12260.1 (e_value=4e-101) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395;; (*ITAG) Solyc06g034340.1.1 (e_value=8e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20774519-20776461 transcript_region:SL2.40ch06:20774519..20776461- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9ICS8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000046g0008.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|73 NbS00005026g0122.1 protein AED:0.05 eAED:0.05 QI:34|0.75|0.8|1|0.5|0.4|5|147|409 NbS00005026g0107.1 protein AED:0.05 eAED:0.05 QI:183|0.85|0.87|1|0.71|0.5|8|528|290 NbS00005026g0120.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|1|1|1|4|0|416 NbS00005026g0127.1 protein AED:0.13 eAED:0.13 QI:239|0.8|0.83|1|0.8|0.83|6|385|229 NbS00005026g0125.1 protein AED:0.30 eAED:0.30 QI:121|0.91|0.69|1|1|1|13|0|897 NbS00005026g0129.1 protein AED:0.35 eAED:0.35 QI:0|0.77|0.6|1|0.77|0.8|10|0|431 NbS00017488g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|57012874|sp|Q9LW48.1|ERF5_NICSY (e_value=2e-141) RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NsERF4;; (*SWP) sp|Q9LW48|ERF5_NICSY (e_value=5e-143) Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=6e-55) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093550.1.1 (e_value=2e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00017488g0007.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|244; (*GB) gi|57012874|sp|Q9LW48.1|ERF5_NICSY (e_value=4e-123) RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NsERF4;; (*SWP) sp|Q9LW48|ERF5_NICSY (e_value=1e-124) Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=5e-40) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093550.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00017488g0004.1 protein AED:0.47 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|179 NbS00017488g0010.1 protein AED:0.26 eAED:0.50 QI:0|0|0|1|0|0|4|0|202 NbS00017488g0108.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|220 NbS00017488g0116.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.8|1|0.75|0.8|5|175|246 NbS00017488g0114.1 protein AED:0.29 eAED:0.29 QI:0|1|0.88|1|0.75|0.77|9|0|345 NbS00017488g0115.1 protein AED:0.74 eAED:0.82 QI:84|0.5|0|1|1|1|3|0|134 NbS00023839g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.72|0.58|1|1|1|12|0|1013; (*GB) gi|224128678|ref|XP_002329063.1| (e_value=0.0) aminophospholipid ATPase [Populus trichocarpa];; (*SWP) sp|Q9SLK6|ALA6_ARATH (e_value=0.0) Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2;; (*TAIR) AT1G54280.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:20262766-20267293 REVERSE LENGTH=1240;; (*ITAG) Solyc12g044920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45725468-45730501 transcript_region:SL2.40ch12:45725468..45730501+ go_terms:GO:0016020,GO:0016021 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 ***- C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0016020,GO:0016021 NbS00033237g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|1|4|0|270; (*GB) gi|356525876|ref|XP_003531547.1| (e_value=2e-159) PREDICTED: probable protein phosphatase 2C 10-like [Glycine max];; (*SWP) sp|Q9S9Z7|P2C10_ARATH (e_value=5e-152) Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1;; (*TAIR) AT1G34750.1 (e_value=4e-153) | Symbols: | Protein phosphatase 2C family protein | chr1:12736386-12737727 REVERSE LENGTH=282;; (*ITAG) Solyc01g105280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85268417-85273043 transcript_region:SL2.40ch01:85268417..85273043+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C-like (AHRD V1 ***- A2Q6E4_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00027086g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|82623425|gb|ABB87127.1| (e_value=3e-32) enolase-like [Solanum tuberosum];; (*SWP) sp|P26300|ENO_SOLLC (e_value=3e-32) Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1;; (*TAIR) AT2G36530.1 (e_value=3e-31) | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444;; (*ITAG) Solyc09g009020.2.1 (e_value=2e-33) genomic_reference:SL2.40ch09 gene_region:2370061-2375045 transcript_region:SL2.40ch09:2370061..2375045+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00027086g0006.1 protein AED:0.36 eAED:0.58 QI:0|0|0|1|0|0|2|0|107; (*GB) gi|82623425|gb|ABB87127.1| (e_value=2e-21) enolase-like [Solanum tuberosum];; (*SWP) sp|P26300|ENO_SOLLC (e_value=1e-20) Enolase OS=Solanum lycopersicum GN=PGH1 PE=2 SV=1;; (*TAIR) AT2G36530.1 (e_value=2e-20) | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444;; (*ITAG) Solyc09g009020.2.1 (e_value=6e-22) genomic_reference:SL2.40ch09 gene_region:2370061-2375045 transcript_region:SL2.40ch09:2370061..2375045+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00027086g0005.1 protein AED:0.40 eAED:0.54 QI:0|0|0|1|0|0|3|0|77; (*ITAG) Solyc09g009020.2.1 (e_value=4e-13) genomic_reference:SL2.40ch09 gene_region:2370061-2375045 transcript_region:SL2.40ch09:2370061..2375045+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00058741g0004.1 protein AED:0.00 eAED:0.00 QI:72|1|1|1|1|1|2|285|224; (*GB) gi|359474315|ref|XP_002266637.2| (e_value=4e-87) PREDICTED: uncharacterized protein LOC100249883 [Vitis vinifera];; (*TAIR) AT2G45360.1 (e_value=3e-74) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc08g079480.2.1 (e_value=5e-111) genomic_reference:SL2.40ch08 gene_region:60164440-60165467 transcript_region:SL2.40ch08:60164440..60165467+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00058741g0007.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|0.16|0.28|7|653|155; (*ITAG) Solyc08g007490.2.1 (e_value=5e-57) genomic_reference:SL2.40ch08 gene_region:2048561-2054722 transcript_region:SL2.40ch08:2048561..2054722- functional_description:"Peptidyl-tRNA hydrolase ICT1, mitochondrial (AHRD V1 *-*- ICT1_SALSA)"; NbS00018174g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|225462211|ref|XP_002270778.1| (e_value=3e-115) PREDICTED: uncharacterized protein LOC100259352 [Vitis vinifera];; (*TAIR) AT1G56020.1 (e_value=8e-66) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits to 958 proteins in 192 species: Archae - 0; Bacteria - 193; Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8; Other Eukaryotes - 1887 (source: NCBI BLink). | chr1:20952216-20953412 FORWARD LENGTH=398;; (*ITAG) Solyc07g066350.1.1 (e_value=9e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65045913-65047115 transcript_region:SL2.40ch07:65045913..65047115- functional_description:"Unknown Protein (AHRD V1)"; NbS00018174g0006.1 protein AED:0.33 eAED:0.33 QI:17|0.4|0.33|0.83|0.4|0.66|6|0|223; (*GB) gi|225462195|ref|XP_002269358.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100257623 [Vitis vinifera];; (*TAIR) AT1G79070.1 (e_value=2e-34) | Symbols: | SNARE-associated protein-related | chr1:29745018-29745807 REVERSE LENGTH=138;; (*ITAG) Solyc07g066370.2.1 (e_value=4e-66) genomic_reference:SL2.40ch07 gene_region:65051736-65054766 transcript_region:SL2.40ch07:65051736..65054766- functional_description:"Unknown Protein (AHRD V1)"; NbS00004518g0005.1 protein AED:0.14 eAED:0.14 QI:1070|1|1|1|0.66|0.75|4|385|461; (*GB) gi|75120871|sp|Q6DW73.1|DGDG2_LOTJA (e_value=0.0) RecName: Full=Digalactosyldiacylglycerol synthase 2, chloroplastic;; (*SWP) sp|Q6DW73|DGDG2_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=0.0) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc10g017580.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5463304-5471231 transcript_region:SL2.40ch10:5463304..5471231+ go_terms:GO:0035250 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250 NbS00023433g0015.1 protein AED:0.26 eAED:0.26 QI:69|1|0.71|1|0.66|0.71|7|295|202; (*GB) gi|225445678|ref|XP_002267030.1| (e_value=5e-128) PREDICTED: chloroplast envelope membrane protein [Vitis vinifera];; (*SWP) sp|Q5N4M6|PCXA_SYNP6 (e_value=7e-35) Proton extrusion protein PcxA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pcxA PE=3 SV=1;; (*TAIR) AT4G31040.1 (e_value=4e-126) | Symbols: | CemA-like proton extrusion protein-related | chr4:15111811-15113881 REVERSE LENGTH=438;; (*ITAG) Solyc07g042820.2.1 (e_value=4e-74) genomic_reference:SL2.40ch07 gene_region:53652957-53662346 transcript_region:SL2.40ch07:53652957..53662346+ go_terms:GO:0016021 functional_description:"Chloroplast envelope membrane protein (AHRD V1 ***- C4XUP2_CRYJA); contains Interpro domain(s) IPR004282 CemA "; GO:0016021 NbS00023433g0018.1 protein AED:0.36 eAED:0.38 QI:0|0.5|0|1|0.5|0.66|3|0|483; (*GB) gi|359483084|ref|XP_002273826.2| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 6-like [Vitis vinifera];; (*SWP) sp|Q93Z08|E136_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2;; (*TAIR) AT5G58090.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23505556-23507193 REVERSE LENGTH=477;; (*ITAG) Solyc05g025500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32867544-32874865 transcript_region:SL2.40ch05:32867544..32874865+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00023433g0016.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|102; (*GB) gi|1620986|emb|CAA70082.1| (e_value=2e-62) 40S ribosomal protein S17 [Nicotiana plumbaginifolia];; (*SWP) sp|B1I1J7|RS17_DESAP (e_value=1e-25) 30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1;; (*TAIR) AT1G49400.1 (e_value=9e-50) | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116;; (*ITAG) Solyc12g009380.1.1 (e_value=4e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2671827-2673707 transcript_region:SL2.40ch12:2671827..2673707+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 ***- B4FMH4_MAIZE); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00023433g0003.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.53|0.92|1|1|13|225|617; (*GB) gi|350539321|ref|NP_001234387.1| (e_value=0.0) starch synthase VI [Solanum lycopersicum];; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=2e-62) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1;; (*TAIR) AT4G18240.1 (e_value=3e-76) | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | chr4:10082221-10087044 FORWARD LENGTH=1040;; (*ITAG) Solyc07g042830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53663549-53682449 transcript_region:SL2.40ch07:53663549..53682449- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbS00023433g0102.1 protein AED:0.35 eAED:0.35 QI:0|0.25|0|0.6|1|1|5|0|296 NbS00023433g0106.1 protein AED:0.77 eAED:0.77 QI:24|0|0|0.33|0|0|3|0|54 NbS00025822g0007.1 protein AED:0.06 eAED:0.08 QI:0|0|0|1|1|1|3|0|541; (*GB) gi|225453983|ref|XP_002280446.1| (e_value=0.0) PREDICTED: pectinesterase 2 [Vitis vinifera];; (*SWP) sp|O04887|PME2_CITSI (e_value=0.0) Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1;; (*TAIR) AT2G45220.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc01g091050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76528228-76531144 transcript_region:SL2.40ch01:76528228..76531144- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RD90_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00025822g0008.1 protein AED:0.27 eAED:0.27 QI:86|0.5|0.66|1|1|1|3|167|313; (*GB) gi|296089184|emb|CBI38887.3| (e_value=6e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NKQ9|CRR15_ARATH (e_value=4e-88) Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=2 SV=1;; (*TAIR) AT3G60720.1 (e_value=3e-89) | Symbols: PDLP8 | plasmodesmata-located protein 8 | chr3:22442035-22443608 FORWARD LENGTH=279;; (*ITAG) Solyc01g091040.2.1 (e_value=2e-117) genomic_reference:SL2.40ch01 gene_region:76522304-76525396 transcript_region:SL2.40ch01:76522304..76525396+ functional_description:"Cysteine-rich repeat secretory protein 15 (AHRD V1 ***- CRR15_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00033146g0012.1 protein AED:0.23 eAED:0.23 QI:207|1|1|1|0.75|0.6|5|373|357; (*GB) gi|231676|sp|P30360.1|CADH2_TOBAC (e_value=0.0) RecName: Full=Probable cinnamyl alcohol dehydrogenase 2; Short=CAD 2;; (*SWP) sp|P30360|CADH2_TOBAC (e_value=0.0) Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1;; (*TAIR) AT3G19450.1 (e_value=6e-180) | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like zinc-binding alcohol dehydrogenase family protein | chr3:6744859-6747005 FORWARD LENGTH=365;; (*ITAG) Solyc01g107590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86851979-86855737 transcript_region:SL2.40ch01:86851979..86855737+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** C1IC55_GOSHI); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00033146g0015.1 protein AED:0.24 eAED:0.24 QI:222|0.87|0.77|1|0.62|0.77|9|650|447; (*GB) gi|225428918|ref|XP_002282614.1| (e_value=0.0) PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9LT72|PUS4_ARATH (e_value=6e-145) RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis thaliana GN=At3g19440 PE=2 SV=1;; (*TAIR) AT3G19440.1 (e_value=5e-146) | Symbols: | Pseudouridine synthase family protein | chr3:6740778-6743132 FORWARD LENGTH=477;; (*ITAG) Solyc01g107580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86841410-86846306 transcript_region:SL2.40ch01:86841410..86846306+ go_terms:GO:0009451 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7L9Z2_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009451 NbS00033146g0017.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|15|387|879; (*GB) gi|4165154|gb|AAD08711.1| (e_value=0.0) topoisomerase I [Nicotiana tabacum];; (*SWP) sp|P30181|TOP1_ARATH (e_value=0.0) DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1;; (*TAIR) AT5G55310.1 (e_value=0.0) | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta | chr5:22430389-22434590 REVERSE LENGTH=917;; (*ITAG) Solyc07g049720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57386210-57396174 transcript_region:SL2.40ch07:57386210..57396174- go_terms:GO:0003917 functional_description:"DNA topoisomerase I (AHRD V1 **** Q9XGL1_DAUCA); contains Interpro domain(s) IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type "; GO:0003917 NbS00033146g0018.1 protein AED:0.33 eAED:0.34 QI:221|0.5|0.57|1|0|0.28|7|349|220; (*GB) gi|359475413|ref|XP_002282581.2| (e_value=2e-108) PREDICTED: protein unc-50 homolog [Vitis vinifera];; (*SWP) sp|Q54DD7|UNC50_DICDI (e_value=1e-37) Protein unc-50 homolog OS=Dictyostelium discoideum GN=DDB_G0292320 PE=3 SV=1;; (*TAIR) AT2G15240.1 (e_value=4e-90) | Symbols: | UNC-50 family protein | chr2:6615980-6618862 REVERSE LENGTH=252;; (*ITAG) Solyc01g107600.2.1 (e_value=6e-128) genomic_reference:SL2.40ch01 gene_region:86856338-86863612 transcript_region:SL2.40ch01:86856338..86863612- functional_description:"Unc-50 homolog (AHRD V1 ***- C1BXJ0_ESOLU); contains Interpro domain(s) IPR007881 UNC-50 "; NbS00030171g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|224052867|ref|XP_002297620.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55365.1 (e_value=1e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20673983-20674363 REVERSE LENGTH=126;; (*ITAG) Solyc11g042440.1.1 (e_value=1e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:31827516-31827830 transcript_region:SL2.40ch11:31827516..31827830- functional_description:"Genomic DNA chromosome 5 P1 clone MKN22 (AHRD V1 ***- Q9LVC2_ARATH)"; NbS00012642g0003.1 protein AED:0.10 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|124484371|dbj|BAF46296.1| (e_value=3e-178) cytochrome P450 [Ipomoea nil];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=2e-95) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT2G23180.1 (e_value=1e-119) | Symbols: CYP96A1 | cytochrome P450, family 96, subfamily A, polypeptide 1 | chr2:9874953-9876503 FORWARD LENGTH=516;; (*ITAG) Solyc10g087040.1.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:61337352-61339238 transcript_region:SL2.40ch10:61337352..61339238+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00012642g0013.1 protein AED:0.38 eAED:0.38 QI:241|0.85|0.75|1|0.71|0.87|8|0|296; (*GB) gi|145952330|gb|ABP98986.1| (e_value=8e-136) putative ubiquitin associated/TS-N domain-containing protein [Hieracium piloselloides];; (*TAIR) AT3G56740.1 (e_value=4e-130) | Symbols: | Ubiquitin-associated (UBA) protein | chr3:21015631-21017883 FORWARD LENGTH=293;; (*ITAG) Solyc10g080810.1.1 (e_value=1e-162) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61327018-61332143 transcript_region:SL2.40ch10:61327018..61332143+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LVJ2_ARALY); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00012642g0012.1 protein AED:0.27 eAED:0.30 QI:0|0|0|0.66|0|0|3|0|99 NbS00015445g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.66|1|1|3|0|579; (*GB) gi|225459435|ref|XP_002285825.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera];; (*SWP) sp|Q9C8F1|IF5Y_ARATH (e_value=1e-144) Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1;; (*TAIR) AT1G36730.1 (e_value=1e-145) | Symbols: | Translation initiation factor IF2/IF5 | chr1:13898706-13900025 REVERSE LENGTH=439;; (*ITAG) Solyc02g091220.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47171973-47173325 transcript_region:SL2.40ch02:47171973..47173325+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00005233g0001.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|1|1|2|0|517; (*GB) gi|297742531|emb|CBI34680.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=2e-95) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G63450.1 (e_value=4e-177) | Symbols: RHS8 | root hair specific 8 | chr1:23532523-23534517 FORWARD LENGTH=664;; (*ITAG) Solyc12g056260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47571842-47573794 transcript_region:SL2.40ch12:47571842..47573794- go_terms:GO:0016020 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00005233g0108.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|1|1|7|361|271 NbS00005233g0101.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|80|416 NbS00005233g0207.1 protein AED:0.21 eAED:0.22 QI:211|1|0.75|1|1|1|4|0|401 NbS00005233g0210.1 protein AED:0.41 eAED:0.41 QI:0|0.66|0.5|0.75|1|1|4|208|91 NbS00011737g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0.9|1|1|1|10|565|650; (*GB) gi|350536633|ref|NP_001234768.1| (e_value=0.0) TCTR2 protein [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-117) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G08720.1 (e_value=0.0) | Symbols: EDR1, ATEDR1 | Protein kinase superfamily protein | chr1:2774089-2779077 FORWARD LENGTH=933;; (*ITAG) Solyc01g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80387053-80397552 transcript_region:SL2.40ch01:80387053..80397552+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 *-** D7M4D4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004709 NbS00011737g0019.1 protein AED:0.10 eAED:0.12 QI:0|0.25|0|1|0.25|0.2|5|0|497; (*GB) gi|225451207|ref|XP_002271613.1| (e_value=2e-80) PREDICTED: uncharacterized N-acetyltransferase p20-like [Vitis vinifera];; (*TAIR) AT3G22560.1 (e_value=1e-58) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175;; (*ITAG) Solyc01g098010.2.1 (e_value=2e-94) genomic_reference:SL2.40ch01 gene_region:80401808-80402876 transcript_region:SL2.40ch01:80401808..80402876- go_terms:GO:0008152 functional_description:"Acetyltransferase GNAT family protein expressed (AHRD V1 ***- Q852L7_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00030459g0017.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|6|183|202; (*GB) gi|388498430|gb|AFK37281.1| (e_value=5e-42) unknown [Medicago truncatula];; (*TAIR) AT4G14385.2 (e_value=3e-30) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8287196-8288622 REVERSE LENGTH=156;; (*ITAG) Solyc09g072580.2.1 (e_value=6e-58) genomic_reference:SL2.40ch09 gene_region:60608340-60612169 transcript_region:SL2.40ch09:60608340..60612169+ functional_description:"Chromatin modification-related protein MEAF6 (AHRD V1 *-*- EAF6_XENLA); contains Interpro domain(s) IPR015418 Histone H4 acetyltransferase, NuA4 complex, Eaf6 "; NbS00030459g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|195; (*GB) gi|359480277|ref|XP_003632426.1| (e_value=1e-18) PREDICTED: uncharacterized protein LOC100852749 [Vitis vinifera]; NbS00030459g0007.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|2|0|144; (*GB) gi|388492192|gb|AFK34162.1| (e_value=9e-66) unknown [Lotus japonicus];; (*SWP) sp|Q8SAG3|ADF_VITVI (e_value=2e-66) Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1;; (*TAIR) AT2G31200.1 (e_value=2e-60) | Symbols: ADF6, ATADF6 | actin depolymerizing factor 6 | chr2:13294171-13294948 FORWARD LENGTH=146;; (*ITAG) Solyc09g072590.2.1 (e_value=2e-77) genomic_reference:SL2.40ch09 gene_region:60613153-60615233 transcript_region:SL2.40ch09:60613153..60615233+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 6 (AHRD V1 **** D6BR51_9ROSI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00030459g0019.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|1|1|4|0|527; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=0.0) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=0.0) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=5e-98) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00030459g0006.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|542; (*GB) gi|302353424|gb|ADL27918.1| (e_value=0.0) phosphate transporter 1 [Hevea brasiliensis];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=0.0) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g066410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60426564-60428153 transcript_region:SL2.40ch09:60426564..60428153+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00007894g0004.1 protein AED:0.20 eAED:0.20 QI:72|1|0.8|1|0.25|0.6|5|0|409; (*GB) gi|193290724|gb|ACF17670.1| (e_value=0.0) putative pyruvate dehydrogenase E1 beta subunit [Capsicum annuum];; (*SWP) sp|Q32RM2|ODPB_ZYGCR (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2;; (*TAIR) AT2G34590.1 (e_value=0.0) | Symbols: | Transketolase family protein | chr2:14568956-14570844 REVERSE LENGTH=406;; (*ITAG) Solyc04g008590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2195990-2201197 transcript_region:SL2.40ch04:2195990..2201197+ go_terms:GO:0008152 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 ***- B6TQ36_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0008152 NbS00007894g0001.1 protein AED:0.25 eAED:0.25 QI:75|0|0.5|1|0|0.5|2|0|320; (*GB) gi|153793260|gb|ABS50432.1| (e_value=0.0) chilling-responsive protein [Nicotiana tabacum];; (*SWP) sp|P46518|LEA14_GOSHI (e_value=2e-19) Late embryogenesis abundant protein Lea14-A OS=Gossypium hirsutum GN=LEA14-A PE=2 SV=1;; (*TAIR) AT2G44060.2 (e_value=8e-158) | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325;; (*ITAG) Solyc08g015690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5133715-5137445 transcript_region:SL2.40ch08:5133715..5137445- go_terms:GO:0009269 functional_description:"Late-embryogenesis abundant protein 2 (AHRD V1 **-- C6T750_SOYBN); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00007894g0017.1 protein AED:0.26 eAED:0.26 QI:50|0.5|0.45|1|0.5|0.54|11|0|636; (*GB) gi|255543489|ref|XP_002512807.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=0.0) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=0.0) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc08g015680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:5120979-5126521 transcript_region:SL2.40ch08:5120979..5126521- go_terms:GO:0009674 functional_description:"Potassium transporter 2 (AHRD V1 **** B6U7Z6_MAIZE); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00007894g0005.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|224128806|ref|XP_002320426.1| (e_value=2e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=1e-53) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=1e-54) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc08g015680.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:5120979-5126521 transcript_region:SL2.40ch08:5120979..5126521- go_terms:GO:0009674 functional_description:"Potassium transporter 2 (AHRD V1 **** B6U7Z6_MAIZE); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00018379g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|342; (*GB) gi|111378451|gb|ABH09237.1| (e_value=2e-177) CONSTANS-like protein [Solanum tuberosum];; (*SWP) sp|Q940T9|COL4_ARATH (e_value=2e-98) Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2;; (*TAIR) AT5G24930.1 (e_value=7e-99) | Symbols: ATCOL4, COL4 | CONSTANS-like 4 | chr5:8589325-8590949 FORWARD LENGTH=406;; (*ITAG) Solyc12g096500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63736405-63737572 transcript_region:SL2.40ch12:63736405..63737572+ go_terms:GO:0005622 functional_description:"CONSTANS-like protein (AHRD V1 ***- Q0MQL9_SOLTU); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00050838g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.6|1|0.5|0.6|5|318|478; (*GB) gi|85068684|gb|ABC69422.1| (e_value=0.0) CYP72A58 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=4e-161) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=3e-171) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g062520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62443567-62447482 transcript_region:SL2.40ch07:62443567..62447482+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00050838g0004.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|116; (*GB) gi|85068684|gb|ABC69422.1| (e_value=2e-34) CYP72A58 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=2e-21) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14650.1 (e_value=2e-28) | Symbols: CYP72A11 | cytochrome P450, family 72, subfamily A, polypeptide 11 | chr3:4922206-4924165 FORWARD LENGTH=512;; (*ITAG) Solyc07g062500.2.1 (e_value=5e-32) genomic_reference:SL2.40ch07 gene_region:62434832-62439287 transcript_region:SL2.40ch07:62434832..62439287+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010046g0011.1 protein AED:0.04 eAED:0.04 QI:169|0.8|0.83|1|0.8|0.83|6|231|227; (*GB) gi|359475200|ref|XP_002282080.2| (e_value=7e-97) PREDICTED: B3 domain-containing protein At3g19184-like [Vitis vinifera];; (*SWP) sp|Q1G3M3|Y3918_ARATH (e_value=7e-81) B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=6e-82) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108140.2.1 (e_value=3e-114) genomic_reference:SL2.40ch01 gene_region:87261228-87266226 transcript_region:SL2.40ch01:87261228..87266226+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 ***- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00010046g0010.1 protein AED:0.24 eAED:0.25 QI:0|0.28|0.25|0.87|1|1|8|0|1290; (*GB) gi|359475378|ref|XP_002282086.2| (e_value=4e-171) PREDICTED: uncharacterized protein LOC100257340 [Vitis vinifera];; (*TAIR) AT3G19190.1 (e_value=2e-109) | Symbols: ATATG2, ATG2 | autophagy 2 | chr3:6639879-6648274 FORWARD LENGTH=1839;; (*ITAG) Solyc01g108160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87285443-87302810 transcript_region:SL2.40ch01:87285443..87302810+ functional_description:"Autophagy-related protein 2 (AHRD V1 *-*- C1GCV2_PARBD); contains Interpro domain(s) IPR015412 ATG2, C-terminal "; NbS00010046g0001.1 protein AED:0.51 eAED:0.51 QI:0|0.45|0.41|0.66|1|1|12|0|497; (*GB) gi|297741295|emb|CBI32426.3| (e_value=3e-160) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CM30|ATG2_CRYNJ (e_value=7e-44) Autophagy-related protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG2 PE=3 SV=1;; (*TAIR) AT3G19190.1 (e_value=6e-119) | Symbols: ATATG2, ATG2 | autophagy 2 | chr3:6639879-6648274 FORWARD LENGTH=1839;; (*ITAG) Solyc01g108160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87285443-87302810 transcript_region:SL2.40ch01:87285443..87302810+ functional_description:"Autophagy-related protein 2 (AHRD V1 *-*- C1GCV2_PARBD); contains Interpro domain(s) IPR015412 ATG2, C-terminal "; NbS00010046g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|714; (*GB) gi|147834943|emb|CAN70199.1| (e_value=0.0) hypothetical protein VITISV_021220 [Vitis vinifera];; (*SWP) sp|Q9ZQE5|PP153_ARATH (e_value=5e-178) Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2;; (*TAIR) AT2G15690.1 (e_value=4e-179) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6831855-6833594 REVERSE LENGTH=579;; (*ITAG) Solyc01g108180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87311387-87313596 transcript_region:SL2.40ch01:87311387..87313596+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00010046g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|89; (*GB) gi|224123478|ref|XP_002330324.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g108170.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:87304636-87305554 transcript_region:SL2.40ch01:87304636..87305554- functional_description:"Unknown Protein (AHRD V1)"; NbS00010046g0020.1 protein AED:0.25 eAED:0.25 QI:0|0.76|0.66|0.94|0.64|0.66|18|0|588; (*GB) gi|171854667|dbj|BAG16523.1| (e_value=0.0) putative NADPH oxidoreductase [Capsicum chinense];; (*SWP) sp|Q8BGC4|ZADH2_MOUSE (e_value=5e-82) Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1;; (*TAIR) AT1G49670.1 (e_value=0.0) | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=629;; (*ITAG) Solyc01g108150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87266478-87282799 transcript_region:SL2.40ch01:87266478..87282799- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase zinc-binding dehydrogenase family protein (AHRD V1 *--- Q22RF9_TETTH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00040638g0001.1 protein AED:0.32 eAED:0.34 QI:0|0.33|0.25|1|1|1|4|0|361; (*GB) gi|225430163|ref|XP_002282242.1| (e_value=2e-149) PREDICTED: 6-hydroxynicotinate 3-monooxygenase [Vitis vinifera];; (*TAIR) AT5G11330.1 (e_value=3e-120) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:3617342-3618861 REVERSE LENGTH=408;; (*ITAG) Solyc08g067470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53702695-53705401 transcript_region:SL2.40ch08:53702695..53705401+ go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding (AHRD V1 ***- Q39G60_BURS3); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00040638g0002.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0|0.66|1|1|3|0|145; (*GB) gi|224141847|ref|XP_002324273.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|O14046|VATO_SCHPO (e_value=6e-28) Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=2 SV=1;; (*TAIR) AT2G25610.1 (e_value=1e-60) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr2:10901585-10902494 REVERSE LENGTH=178;; (*ITAG) Solyc08g067480.2.1 (e_value=4e-63) genomic_reference:SL2.40ch08 gene_region:53706433-53711129 transcript_region:SL2.40ch08:53706433..53711129- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00026706g0011.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.66|1|0.8|0.66|6|0|297; (*GB) gi|255569800|ref|XP_002525864.1| (e_value=5e-157) abhydrolase domain containing, putative [Ricinus communis];; (*SWP) sp|Q1LZ86|ABHD6_BOVIN (e_value=3e-19) Monoacylglycerol lipase ABHD6 OS=Bos taurus GN=ABHD6 PE=2 SV=1;; (*TAIR) AT5G09430.1 (e_value=3e-151) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311;; (*ITAG) Solyc10g047340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36056292-36057424 transcript_region:SL2.40ch10:36056292..36057424+ go_terms:GO:0003824 functional_description:"Hydrolase (AHRD V1 ***- Q4PSG2_ARATH); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00026706g0006.1 protein AED:0.43 eAED:1.00 QI:0|0|0|1|1|1|2|0|169 NbS00026706g0018.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|123; (*GB) gi|388498836|gb|AFK37484.1| (e_value=1e-59) unknown [Lotus japonicus];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=2e-28) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G65260.1 (e_value=3e-54) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc10g047360.1.1 (e_value=4e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:36096199-36100555 transcript_region:SL2.40ch10:36096199..36100555- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00026706g0017.1 protein AED:0.04 eAED:0.06 QI:0|0|0.2|1|0.25|0.2|5|32|824; (*GB) gi|356529585|ref|XP_003533370.1| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max];; (*SWP) sp|Q8VXV7|LDL1_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1;; (*TAIR) AT1G62830.1 (e_value=0.0) | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like 1 | chr1:23264638-23267172 REVERSE LENGTH=844;; (*ITAG) Solyc11g008320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00026706g0016.1 protein AED:0.11 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|907; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-93) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=2e-78) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc10g047320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00055055g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|213 NbS00038323g0002.1 protein AED:0.24 eAED:0.24 QI:432|1|0.88|1|0.87|0.77|9|0|429; (*GB) gi|255538354|ref|XP_002510242.1| (e_value=0.0) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9FX08|P2C12_ARATH (e_value=0.0) Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1;; (*TAIR) AT1G47380.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428;; (*ITAG) Solyc04g079120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61298550-61303970 transcript_region:SL2.40ch04:61298550..61303970- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein expressed (AHRD V1 ***- Q94LH3_ORYSJ); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00038371g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|100 NbS00043908g0011.1 protein AED:0.04 eAED:0.08 QI:48|0.5|0.33|0.66|1|0.66|3|0|136; (*GB) gi|17366765|sp|Q9FVI1.1|ADF2_PETHY (e_value=8e-92) RecName: Full=Actin-depolymerizing factor 2; Short=ADF-2;; (*SWP) sp|Q9FVI1|ADF2_PETHY (e_value=2e-93) Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1;; (*TAIR) AT5G59890.1 (e_value=3e-82) | Symbols: ADF4, ATADF4 | actin depolymerizing factor 4 | chr5:24122545-24123596 FORWARD LENGTH=139;; (*ITAG) Solyc04g011370.2.1 (e_value=5e-96) genomic_reference:SL2.40ch04 gene_region:3845935-3848508 transcript_region:SL2.40ch04:3845935..3848508+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 2 (AHRD V1 **** Q541R7_PETHY); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00026831g0003.1 protein AED:0.08 eAED:0.12 QI:0|1|0.33|1|0.5|0.66|3|0|258; (*GB) gi|224099991|ref|XP_002311700.1| (e_value=6e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4JL84|MYB59_ARATH (e_value=7e-52) Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2;; (*TAIR) AT3G24310.1 (e_value=1e-78) | Symbols: MYB305, ATMYB71 | myb domain protein 305 | chr3:8811336-8812330 REVERSE LENGTH=269;; (*ITAG) Solyc09g090790.2.1 (e_value=2e-106) genomic_reference:SL2.40ch09 gene_region:65552080-65553197 transcript_region:SL2.40ch09:65552080..65553197- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6QAD8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00027048g0006.1 protein AED:0.35 eAED:0.35 QI:49|0.75|0.6|1|1|0.8|5|0|160; (*GB) gi|3024019|sp|P56333.1|IF5A1_SOLTU (e_value=1e-111) RecName: Full=Eukaryotic translation initiation factor 5A-1/2; Short=eIF-5A-1/2; AltName: Full=eIF-4D;; (*SWP) sp|P56333|IF5A1_SOLTU (e_value=3e-113) Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1;; (*TAIR) AT1G13950.1 (e_value=7e-103) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc12g010060.1.1 (e_value=1e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3203778-3206878 transcript_region:SL2.40ch12:3203778..3206878- go_terms:GO:0045905 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 ***- Q207T7_GYMCO); contains Interpro domain(s) IPR019769 Translation elongation factor, IF5A, hypusine site "; GO:0045905 NbC24031742g0001.1 protein AED:0.19 eAED:0.60 QI:15|0|0.5|1|0|0|2|16|56 NbS00033207g0003.1 protein AED:0.13 eAED:0.13 QI:271|0.92|0.85|1|0.46|0.5|14|391|702; (*GB) gi|147787284|emb|CAN75764.1| (e_value=3e-57) hypothetical protein VITISV_034442 [Vitis vinifera];; (*SWP) sp|P21569|CYPH_MAIZE (e_value=3e-33) Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1;; (*TAIR) AT3G63400.3 (e_value=4e-45) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:23412449-23415435 FORWARD LENGTH=570;; (*ITAG) Solyc09g065720.2.1 (e_value=1e-69) genomic_reference:SL2.40ch09 gene_region:59607919-59613459 transcript_region:SL2.40ch09:59607919..59613459+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B9H8E5_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00016377g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|185; (*ITAG) Solyc07g061890.1.1 (e_value=3e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62000405-62000956 transcript_region:SL2.40ch07:62000405..62000956+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016377g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|219; (*GB) gi|175363783|gb|ACB72463.1| (e_value=1e-73) putative virus-specific-signaling-pathway regulated protein [Nicotiana tabacum]; NbS00001106g0006.1 protein AED:0.06 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|771; (*GB) gi|225439974|ref|XP_002276043.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase-like protein CCR1-like [Vitis vinifera];; (*SWP) sp|Q9S7D9|ACCR1_ARATH (e_value=0.0) Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1;; (*TAIR) AT3G09780.1 (e_value=0.0) | Symbols: CCR1, ATCRR1 | CRINKLY4 related 1 | chr3:3000838-3003165 REVERSE LENGTH=775;; (*ITAG) Solyc09g007750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1282766-1285331 transcript_region:SL2.40ch09:1282766..1285331- go_terms:GO:0042803 functional_description:"Receptor-like kinase (AHRD V1 *-*- C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00001106g0007.1 protein AED:0.28 eAED:0.28 QI:219|0.71|0.62|0.87|0.14|0.12|8|0|352; (*GB) gi|255557018|ref|XP_002519542.1| (e_value=1e-149) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|P85193|PK01_HELAN (e_value=5e-115) Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT1G16670.1 (e_value=1e-120) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc09g007730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1272790-1275138 transcript_region:SL2.40ch09:1272790..1275138+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U5V2_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00012281g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|699; (*GB) gi|302398727|gb|ADL36658.1| (e_value=0.0) C3HL domain class transcription factor [Malus x domestica];; (*SWP) sp|Q10EL1|C3H24_ORYSJ (e_value=0.0) Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc03g063680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:32748983-32751070 transcript_region:SL2.40ch03:32748983..32751070+ go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0003700 NbS00014744g0005.1 protein AED:0.12 eAED:0.12 QI:181|1|1|1|0.71|0.62|8|215|412; (*GB) gi|28200786|emb|CAD45374.1| (e_value=4e-158) potyviral helper component protease-interacting protein 1 [Solanum tuberosum subsp. andigenum];; (*TAIR) AT4G01270.1 (e_value=4e-70) | Symbols: | RING/U-box superfamily protein | chr4:532351-534891 FORWARD LENGTH=506;; (*ITAG) Solyc05g050020.2.1 (e_value=2e-162) genomic_reference:SL2.40ch05 gene_region:59070037-59075347 transcript_region:SL2.40ch05:59070037..59075347- go_terms:GO:0008270 functional_description:"Potyviral helper component protease-interacting protein 1 (AHRD V1 **-- Q84VS3_SOLTU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014744g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0.5|0.5|1|1|2|175|90; (*ITAG) Solyc05g049990.2.1 (e_value=4e-16) genomic_reference:SL2.40ch05 gene_region:58992635-58994973 transcript_region:SL2.40ch05:58992635..58994973+ functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8LN41_ORYSJ)"; NbS00014744g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|350537107|ref|NP_001234280.1| (e_value=1e-22) 1-aminocyclopropane-1-carboxylate synthase 4 [Solanum lycopersicum];; (*SWP) sp|P29535|1A14_SOLLC (e_value=4e-24) 1-aminocyclopropane-1-carboxylate synthase 4 OS=Solanum lycopersicum GN=ACS4 PE=2 SV=1;; (*TAIR) AT1G01480.1 (e_value=2e-20) | Symbols: ACS2, AT-ACC2 | 1-amino-cyclopropane-1-carboxylate synthase 2 | chr1:175862-178051 FORWARD LENGTH=496;; (*ITAG) Solyc05g050010.2.1 (e_value=1e-24) genomic_reference:SL2.40ch05 gene_region:59035052-59037966 transcript_region:SL2.40ch05:59035052..59037966+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q659H5_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00014942g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|5|141|590; (*GB) gi|118487530|gb|ABK95592.1| (e_value=3e-118) unknown [Populus trichocarpa];; (*TAIR) AT4G20900.1 (e_value=2e-94) | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11184103-11185844 REVERSE LENGTH=450;; (*ITAG) Solyc06g075640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43400106-43403274 transcript_region:SL2.40ch06:43400106..43403274+ go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00014942g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0.66|0.5|4|453|252; (*GB) gi|351722853|ref|NP_001238026.1| (e_value=2e-139) nodulin-26 [Glycine max];; (*SWP) sp|O82598|TIP13_ARATH (e_value=1e-130) Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1;; (*TAIR) AT4G01470.1 (e_value=8e-132) | Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 | tonoplast intrinsic protein 1;3 | chr4:625092-625850 REVERSE LENGTH=252;; (*ITAG) Solyc06g075650.2.1 (e_value=1e-152) genomic_reference:SL2.40ch06 gene_region:43405284-43406388 transcript_region:SL2.40ch06:43405284..43406388+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00033690g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|0.75|0.66|0.25|4|0|238; (*GB) gi|224078664|ref|XP_002305598.1| (e_value=3e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B38|GPT2_ARATH (e_value=6e-97) Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2;; (*TAIR) AT1G61800.1 (e_value=5e-98) | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388;; (*ITAG) Solyc03g031740.1.1 (e_value=4e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8477039-8480032 transcript_region:SL2.40ch03:8477039..8480032- go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** D7KVF2_ARALY); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00043977g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.88|0.8|0.9|0.88|0.9|10|0|754; (*GB) gi|78440948|gb|ABB43279.1| (e_value=0.0) oxysterol-binding related protein 1 [Petunia integrifolia];; (*SWP) sp|Q8L751|ORP1C_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1;; (*TAIR) AT4G08180.2 (e_value=0.0) | Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=813;; (*ITAG) Solyc07g006100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:946720-955495 transcript_region:SL2.40ch07:946720..955495- go_terms:GO:0035091,GO:0008142 functional_description:"Oxysterol-binding protein (AHRD V1 **** A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0035091,GO:0008142 NbS00004281g0006.1 protein AED:0.26 eAED:0.26 QI:109|0.6|0.5|1|0.4|0.5|6|0|404; (*GB) gi|356500557|ref|XP_003519098.1| (e_value=9e-152) PREDICTED: nitrate transporter 1.2-like [Glycine max];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=3e-135) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=2e-136) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00004281g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|255558232|ref|XP_002520143.1| (e_value=4e-120) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=1e-111) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=1e-112) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=3e-132) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00026903g0004.1 protein AED:0.31 eAED:0.71 QI:0|0|0|1|1|1|2|0|102; (*GB) gi|225431910|ref|XP_002276776.1| (e_value=2e-20) PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=1e-18) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06680.1 (e_value=8e-20) | Symbols: | Ribosomal L29e protein family | chr3:2114402-2114877 REVERSE LENGTH=83;; (*ITAG) Solyc05g053440.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbS00027181g0008.1 protein AED:0.01 eAED:0.00 QI:654|1|0.33|1|1|1|3|0|104; (*GB) gi|357517325|ref|XP_003628951.1| (e_value=5e-22) U2-associated protein SR140 [Medicago truncatula];; (*TAIR) AT5G25060.1 (e_value=1e-20) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=4e-33) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00027181g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.73|1|0.85|0.86|15|0|902; (*GB) gi|356526679|ref|XP_003531944.1| (e_value=0.0) PREDICTED: U2 snRNP-associated SURP motif-containing protein-like [Glycine max];; (*SWP) sp|Q5R7X2|SR140_PONAB (e_value=4e-97) U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii GN=U2SURP PE=2 SV=1;; (*TAIR) AT5G25060.1 (e_value=0.0) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00038837g0001.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|1|1|1|3|0|566; (*GB) gi|225458768|ref|XP_002285105.1| (e_value=0.0) PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=9e-162) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT4G37320.1 (e_value=3e-161) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc04g078270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60632095-60634606 transcript_region:SL2.40ch04:60632095..60634606- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004110g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|519|450; (*GB) gi|55956988|emb|CAI11458.1| (e_value=0.0) putative glycosyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=0.0) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=0.0) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc03g115740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00004110g0016.1 protein AED:0.13 eAED:0.17 QI:942|0.5|0.42|1|0.5|0.71|7|652|595; (*GB) gi|359491315|ref|XP_002281757.2| (e_value=0.0) PREDICTED: two-component response regulator-like APRR1-like [Vitis vinifera];; (*SWP) sp|Q9LKL2|APRR1_ARATH (e_value=1e-154) Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1;; (*TAIR) AT5G61380.1 (e_value=7e-156) | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618;; (*ITAG) Solyc03g115770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59430792-59436633 transcript_region:SL2.40ch03:59430792..59436633- go_terms:GO:0030528,GO:0010843 functional_description:"Timing of CAB expression-like"; GO:0030528,GO:0010843 NbS00004110g0020.1 protein AED:0.21 eAED:0.22 QI:267|0.5|0.57|1|0.5|0.42|7|312|406; (*GB) gi|225457353|ref|XP_002281793.1| (e_value=2e-160) PREDICTED: uncharacterized protein LOC100265514 [Vitis vinifera];; (*TAIR) AT5G07710.1 (e_value=7e-124) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:2453310-2455357 FORWARD LENGTH=468;; (*ITAG) Solyc03g115780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59441014-59444756 transcript_region:SL2.40ch03:59441014..59444756- go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00004110g0011.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|131; (*GB) gi|356495360|ref|XP_003516546.1| (e_value=1e-34) PREDICTED: thaumatin-like protein 1-like [Glycine max];; (*SWP) sp|O80327|TLP1_PYRPY (e_value=2e-19) Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1;; (*TAIR) AT4G38670.3 (e_value=6e-30) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:18069856-18071227 REVERSE LENGTH=281;; (*ITAG) Solyc02g083790.2.1 (e_value=1e-42) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00004110g0026.1 protein AED:0.03 eAED:0.03 QI:101|1|1|1|0|0|2|914|245; (*ITAG) Solyc03g115730.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:59415805-59416937 transcript_region:SL2.40ch03:59415805..59416937+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004110g0019.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|631; (*GB) gi|359478627|ref|XP_002280815.2| (e_value=0.0) PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Vitis vinifera];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=0.0) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT2G29040.1 (e_value=0.0) | Symbols: | Exostosin family protein | chr2:12472425-12474962 REVERSE LENGTH=720;; (*ITAG) Solyc03g115750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59422877-59424604 transcript_region:SL2.40ch03:59422877..59424604+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00004110g0018.1 protein AED:0.32 eAED:0.32 QI:212|1|0.83|1|0.8|0.66|6|0|221; (*GB) gi|78191454|gb|ABB29948.1| (e_value=6e-142) vesicle transport v-SNARE 11-like [Solanum tuberosum];; (*SWP) sp|Q9LVP9|VTI13_ARATH (e_value=2e-115) Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1;; (*TAIR) AT5G39510.1 (e_value=4e-113) | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 | Vesicle transport v-SNARE family protein | chr5:15822035-15823591 FORWARD LENGTH=221;; (*ITAG) Solyc03g115760.2.1 (e_value=9e-142) genomic_reference:SL2.40ch03 gene_region:59426055-59429910 transcript_region:SL2.40ch03:59426055..59429910+ go_terms:GO:0004872 functional_description:"Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0004872 NbS00016504g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|1|1|2|0|158; (*GB) gi|359491395|ref|XP_002274202.2| (e_value=6e-46) PREDICTED: strictosidine synthase 3-like [Vitis vinifera];; (*SWP) sp|P18417|STSY_CATRO (e_value=2e-28) Strictosidine synthase OS=Catharanthus roseus GN=STR1 PE=1 SV=2;; (*TAIR) AT3G57030.1 (e_value=2e-33) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc12g039070.1.1 (e_value=4e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:37655237-37658950 transcript_region:SL2.40ch12:37655237..37658950- go_terms:GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00002176g0011.1 protein AED:0.11 eAED:0.18 QI:228|1|0.66|1|1|1|3|0|453; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=2e-169) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=7e-162) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc04g071750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56305032-56307353 transcript_region:SL2.40ch04:56305032..56307353+ go_terms:GO:0051015 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0051015 NbS00002176g0013.1 protein AED:0.02 eAED:0.02 QI:705|1|1|1|0.6|0.5|6|547|637; (*GB) gi|224094801|ref|XP_002310241.1| (e_value=1e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|O23225|PUB5_ARATH (e_value=5e-64) U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3;; (*TAIR) AT4G36550.1 (e_value=4e-65) | Symbols: | ARM repeat superfamily protein | chr4:17245400-17247926 REVERSE LENGTH=718;; (*ITAG) Solyc03g034020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10005339-10009833 transcript_region:SL2.40ch03:10005339..10009833- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein 5 (AHRD V1 ***- D7MBG7_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005515,GO:0004842 NbS00002176g0012.1 protein AED:0.19 eAED:0.19 QI:164|1|1|1|0.5|0.66|3|314|317; (*GB) gi|225430730|ref|XP_002266502.1| (e_value=5e-46) PREDICTED: transcription factor bHLH64-like [Vitis vinifera];; (*SWP) sp|Q93VJ4|BEE2_ARATH (e_value=4e-44) Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1;; (*TAIR) AT4G36540.1 (e_value=3e-45) | Symbols: BEE2 | BR enhanced expression 2 | chr4:17243699-17244965 FORWARD LENGTH=304;; (*ITAG) Solyc03g034000.2.1 (e_value=8e-82) genomic_reference:SL2.40ch03 gene_region:9980395-9983110 transcript_region:SL2.40ch03:9980395..9983110- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00023305g0001.1 protein AED:0.00 eAED:0.00 QI:88|0|0.5|1|0|0.5|2|124|358; (*GB) gi|386646580|gb|AFJ14634.1| (e_value=2e-40) dehydration-responsive element-binding protein (DREB2), partial [Malus x domestica];; (*SWP) sp|A2WL19|DRE2A_ORYSI (e_value=1e-30) Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2;; (*TAIR) AT2G40340.1 (e_value=3e-31) | Symbols: DREB2C, AtERF48 | Integrase-type DNA-binding superfamily protein | chr2:16848665-16850357 REVERSE LENGTH=341;; (*ITAG) Solyc10g076370.1.1 (e_value=4e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58660798-58662015 transcript_region:SL2.40ch10:58660798..58662015+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00000175g0002.1 protein AED:0.42 eAED:0.42 QI:169|0|0.5|0.5|1|1|2|0|70 NbS00000175g0004.1 protein AED:0.27 eAED:0.27 QI:403|1|1|1|1|1|3|207|160; (*GB) gi|350539992|ref|NP_001233835.1| (e_value=2e-80) heat shock protein binding protein [Solanum lycopersicum];; (*SWP) sp|Q9SAG8|DNAJ8_ARATH (e_value=5e-48) Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1;; (*TAIR) AT1G80920.1 (e_value=4e-49) | Symbols: J8 | Chaperone DnaJ-domain superfamily protein | chr1:30403863-30404549 REVERSE LENGTH=163;; (*ITAG) Solyc03g117590.2.1 (e_value=3e-83) genomic_reference:SL2.40ch03 gene_region:60755293-60756541 transcript_region:SL2.40ch03:60755293..60756541- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C5UZI2_CLOBO); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00034829g0013.1 protein AED:0.02 eAED:0.07 QI:0|0.55|0.5|1|0.55|0.5|10|794|636; (*GB) gi|57918684|gb|AAW59435.1| (e_value=0.0) decreased apical dominance protein [Petunia x hybrida];; (*SWP) sp|Q8VY26|CCD8_ARATH (e_value=0.0) Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=2 SV=1;; (*TAIR) AT4G32810.1 (e_value=0.0) | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570;; (*ITAG) Solyc08g066650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52620195-52623269 transcript_region:SL2.40ch08:52620195..52623269- go_terms:GO:0003834 functional_description:"Carotenoid cleavage dioxygenase 8"; GO:0003834 NbS00034829g0012.1 protein AED:0.31 eAED:0.31 QI:194|1|0.85|1|0.66|0.85|7|0|318; (*GB) gi|225429934|ref|XP_002283851.1| (e_value=9e-127) PREDICTED: UPF0082 protein At2g25830 [Vitis vinifera];; (*SWP) sp|O82314|U082_ARATH (e_value=1e-121) Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2;; (*TAIR) AT2G25830.1 (e_value=1e-122) | Symbols: | YebC-related | chr2:11019091-11021665 REVERSE LENGTH=331;; (*ITAG) Solyc08g066640.2.1 (e_value=6e-173) genomic_reference:SL2.40ch08 gene_region:52611681-52619230 transcript_region:SL2.40ch08:52611681..52619230+ go_terms:GO:0005515 functional_description:"UPF0082 protein yeeN (AHRD V1 **-- YEEN_SALPA); contains Interpro domain(s) IPR002876 Protein of unknown function DUF28 "; GO:0005515 NbS00034829g0004.1 protein AED:0.26 eAED:0.55 QI:0|0|0.5|1|0|0.5|2|490|365; (*GB) gi|296081845|emb|CBI20850.3| (e_value=8e-113) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96IG2|FXL20_HUMAN (e_value=9e-17) F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2;; (*TAIR) AT5G23340.1 (e_value=7e-21) | Symbols: | RNI-like superfamily protein | chr5:7856314-7857983 FORWARD LENGTH=405;; (*ITAG) Solyc08g066630.2.1 (e_value=2e-70) genomic_reference:SL2.40ch08 gene_region:52599617-52600622 transcript_region:SL2.40ch08:52599617..52600622+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034415g0002.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|190; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=1e-20) predicted protein [Populus trichocarpa]; NbS00001987g0009.1 protein AED:0.22 eAED:0.22 QI:84|0.53|0.31|1|0.66|0.68|16|0|987; (*GB) gi|218188155|gb|EEC70582.1| (e_value=0.0) hypothetical protein OsI_01785 [Oryza sativa Indica Group];; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00021001g0002.1 protein AED:0.13 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|251; (*GB) gi|224085451|ref|XP_002307579.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SY06|FAF1_ARATH (e_value=7e-16) Protein FANTASTIC FOUR 1 OS=Arabidopsis thaliana GN=FAF1 PE=2 SV=1;; (*TAIR) AT4G02810.1 (e_value=5e-17) | Symbols: | Protein of unknown function (DUF3049) | chr4:1256253-1257068 FORWARD LENGTH=271;; (*ITAG) Solyc09g065140.1.1 (e_value=2e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58660863-58661594 transcript_region:SL2.40ch09:58660863..58661594- functional_description:"Unknown Protein (AHRD V1)"; NbS00021001g0008.1 protein AED:0.30 eAED:0.30 QI:68|1|0|1|1|0|2|0|120; (*GB) gi|225436930|ref|XP_002275196.1| (e_value=1e-40) PREDICTED: uncharacterized protein LOC100256371 [Vitis vinifera];; (*TAIR) AT1G03160.2 (e_value=3e-32) | Symbols: FZL | FZO-like | chr1:761321-765091 FORWARD LENGTH=740;; (*ITAG) Solyc09g065160.2.1 (e_value=3e-65) genomic_reference:SL2.40ch09 gene_region:58667016-58680192 transcript_region:SL2.40ch09:58667016..58680192- go_terms:GO:0009228,GO:0005525 functional_description:"Dynamin family protein (AHRD V1 *--- D0MDN4_RHOM4); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0009228,GO:0005525 NbS00010194g0003.1 protein AED:0.01 eAED:0.01 QI:155|0.66|0.75|1|1|1|4|0|320; (*GB) gi|78191436|gb|ABB29939.1| (e_value=1e-157) major intrinsic protein 2-like [Solanum tuberosum];; (*SWP) sp|Q6K215|PIP22_ORYSJ (e_value=1e-141) Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1;; (*TAIR) AT2G37170.1 (e_value=4e-138) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc11g069430.1.1 (e_value=6e-162) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51094793-51097463 transcript_region:SL2.40ch11:51094793..51097463- go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- Q9M4T0_ALLCE); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00004472g0008.1 protein AED:0.10 eAED:0.15 QI:0|0.12|0|0.88|1|1|9|0|564; (*GB) gi|225425902|ref|XP_002271378.1| (e_value=0.0) PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera];; (*SWP) sp|O76094|SRP72_HUMAN (e_value=4e-29) Signal recognition particle 72 kDa protein OS=Homo sapiens GN=SRP72 PE=1 SV=3;; (*TAIR) AT1G67680.1 (e_value=1e-175) | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664;; (*ITAG) Solyc11g062270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "; GO:0005047 NbS00004472g0016.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|211; (*GB) gi|359479169|ref|XP_003632228.1| (e_value=7e-101) PREDICTED: calmodulin-related protein isoform 2 [Vitis vinifera];; (*SWP) sp|P62201|CALM_LILLO (e_value=6e-101) Calmodulin OS=Lilium longiflorum PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=5e-102) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=4e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00004472g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.5|1|1|1|6|0|488; (*GB) gi|365222886|gb|AEW69795.1| (e_value=0.0) Hop-interacting protein THI032 [Solanum lycopersicum];; (*SWP) sp|Q56YA5|SGAT_ARATH (e_value=4e-176) Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2;; (*TAIR) AT2G13360.2 (e_value=3e-177) | Symbols: AGT, AGT1, SGAT | alanine:glyoxylate aminotransferase | chr2:5539417-5540902 REVERSE LENGTH=401;; (*ITAG) Solyc12g099930.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65224451-65227305 transcript_region:SL2.40ch12:65224451..65227305+ go_terms:GO:0008152,GO:0030170 functional_description:"Serine-glyoxylate aminotransferase (AHRD V1 ***- Q3S2I1_SPIPO); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00004472g0017.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|0.75|4|0|291; (*GB) gi|42540596|gb|AAS19201.1| (e_value=3e-177) GAL83 [Nicotiana attenuata];; (*SWP) sp|Q84VQ1|KINB1_ARATH (e_value=2e-99) SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1;; (*TAIR) AT5G21170.1 (e_value=2e-100) | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase beta-2 subunit protein | chr5:7205718-7208239 FORWARD LENGTH=283;; (*ITAG) Solyc12g099970.1.1 (e_value=4e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65242252-65245386 transcript_region:SL2.40ch12:65242252..65245386+ go_terms:GO:0019901 functional_description:"5-amp-activated protein kinase beta subunit (AHRD V1 **** Q17IU7_AEDAE); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00004472g0002.1 protein AED:0.29 eAED:0.31 QI:104|0|0.5|1|0|0.5|2|0|158; (*GB) gi|225443363|ref|XP_002265895.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100242841 [Vitis vinifera];; (*TAIR) AT1G16790.1 (e_value=2e-21) | Symbols: | ribosomal protein-related | chr1:5744638-5745072 FORWARD LENGTH=144;; (*ITAG) Solyc12g099960.1.1 (e_value=3e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65240733-65241203 transcript_region:SL2.40ch12:65240733..65241203+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004472g0018.1 protein AED:0.34 eAED:0.37 QI:171|0.87|0.88|1|0.75|0.77|9|341|326; (*GB) gi|225435967|ref|XP_002270467.1| (e_value=2e-141) PREDICTED: uncharacterized protein LOC100244484 [Vitis vinifera];; (*TAIR) AT2G06025.1 (e_value=3e-78) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:2350231-2351898 FORWARD LENGTH=288;; (*ITAG) Solyc12g099940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65228592-65234661 transcript_region:SL2.40ch12:65228592..65234661+ go_terms:GO:0008152 functional_description:"Gcn5-related n-acetyltransferase family protein (AHRD V1 *-*- C1FD65_9CHLO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00025784g0010.1 protein AED:0.13 eAED:0.13 QI:15|1|1|1|1|1|2|497|573; (*GB) gi|255564699|ref|XP_002523344.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=2e-56) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G46500.2 (e_value=0.0) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc01g095990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78862543-78865800 transcript_region:SL2.40ch01:78862543..78865800+ go_terms:GO:0043008 functional_description:"Phosphatidylinositol kinase family-like protein (Fragment) (AHRD V1 *--- C3SA88_BRADI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00025784g0007.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|202; (*GB) gi|225470908|ref|XP_002263581.1| (e_value=5e-57) PREDICTED: uncharacterized protein LOC100250204 [Vitis vinifera];; (*TAIR) AT4G23930.1 (e_value=9e-42) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:12436131-12436694 REVERSE LENGTH=187;; (*ITAG) Solyc01g096000.2.1 (e_value=3e-89) genomic_reference:SL2.40ch01 gene_region:78866675-78867710 transcript_region:SL2.40ch01:78866675..78867710+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SQ86_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00025784g0003.1 protein AED:0.01 eAED:0.01 QI:2235|0|0.5|1|0|0.5|2|0|594; (*GB) gi|359489576|ref|XP_002264071.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250210 [Vitis vinifera];; (*SWP) sp|Q9M358|UVSSA_ARATH (e_value=9e-164) UV-stimulated scaffold protein A homolog OS=Arabidopsis thaliana GN=At3g61800 PE=3 SV=1;; (*TAIR) AT3G61800.1 (e_value=7e-165) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). | chr3:22874723-22876846 REVERSE LENGTH=664;; (*ITAG) Solyc01g096030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78880255-78883964 transcript_region:SL2.40ch01:78880255..78883964- functional_description:"ENTH/VHS domain-containing protein (AHRD V1 *--- D3BFQ6_POLPA); contains Interpro domain(s) IPR018610 Protein of unknown function DUF2043 "; NbS00025784g0008.1 protein AED:0.32 eAED:0.32 QI:259|1|0.66|1|1|1|3|0|330; (*GB) gi|379055945|emb|CCG06554.1| (e_value=0.0) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc01g096020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78874941-78878577 transcript_region:SL2.40ch01:78874941..78878577- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00005522g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|351; (*GB) gi|255552331|ref|XP_002517210.1| (e_value=3e-63) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3E936|MAKR1_ARATH (e_value=6e-38) Probable membrane-associated kinase regulator 1 OS=Arabidopsis thaliana GN=MAKR1 PE=1 SV=1;; (*TAIR) AT5G26230.1 (e_value=5e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9173517-9174542 REVERSE LENGTH=341;; (*ITAG) Solyc09g075750.1.1 (e_value=6e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62866845-62867840 transcript_region:SL2.40ch09:62866845..62867840- functional_description:"Unknown Protein (AHRD V1)"; NbS00015541g0006.1 protein AED:0.30 eAED:0.30 QI:94|1|0.88|1|0.87|0.77|9|0|317; (*GB) gi|147774374|emb|CAN72399.1| (e_value=4e-111) hypothetical protein VITISV_041203 [Vitis vinifera];; (*TAIR) AT3G13410.1 (e_value=2e-83) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:4362149-4364032 REVERSE LENGTH=321;; (*ITAG) Solyc01g049890.2.1 (e_value=3e-153) genomic_reference:SL2.40ch01 gene_region:41867853-41870547 transcript_region:SL2.40ch01:41867853..41870547- functional_description:"Unknown Protein (AHRD V1)"; NbS00021751g0004.1 protein AED:0.09 eAED:0.15 QI:0|0.33|0|1|0.33|0.25|4|0|414; (*GB) gi|356570976|ref|XP_003553658.1| (e_value=1e-84) PREDICTED: probable pectinesterase/pectinesterase inhibitor 39-like [Glycine max];; (*SWP) sp|O81301|PME40_ARATH (e_value=3e-84) Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1;; (*TAIR) AT4G02320.1 (e_value=2e-85) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518;; (*ITAG) Solyc00g170510.1.1 (e_value=4e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:18012465-18013434 transcript_region:SL2.40ch00:18012465..18013434- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00038399g0007.1 protein AED:0.11 eAED:0.11 QI:157|1|1|1|1|1|9|627|338; (*GB) gi|255544664|ref|XP_002513393.1| (e_value=1e-149) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G16520.1 (e_value=8e-121) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325;; (*ITAG) Solyc07g066520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65149420-65152954 transcript_region:SL2.40ch07:65149420..65152954- functional_description:"Os03g0659800 protein (Fragment) (AHRD V1 *-*- Q0DPV3_ORYSJ)"; NbS00038399g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.25|1|0.33|0.25|4|0|263; (*GB) gi|224081437|ref|XP_002306410.1| (e_value=1e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RAP0|UN45A_PONAB (e_value=4e-14) Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1;; (*TAIR) AT1G56090.1 (e_value=5e-88) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20977989-20979185 REVERSE LENGTH=272;; (*ITAG) Solyc07g066530.2.1 (e_value=1e-124) genomic_reference:SL2.40ch07 gene_region:65153760-65157585 transcript_region:SL2.40ch07:65153760..65157585- go_terms:GO:0005488 functional_description:"Mitochondrial import receptor subunit TOM34 (AHRD V1 *--- B5X380_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00038399g0006.1 protein AED:0.16 eAED:0.21 QI:0|0.5|0.33|1|0.5|0.66|3|96|247; (*GB) gi|255544666|ref|XP_002513394.1| (e_value=2e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12890.1 (e_value=2e-31) | Symbols: ASML2 | activator of spomin::LUC2 | chr3:4099223-4100277 FORWARD LENGTH=251;; (*ITAG) Solyc07g066510.2.1 (e_value=4e-80) genomic_reference:SL2.40ch07 gene_region:65144957-65146322 transcript_region:SL2.40ch07:65144957..65146322- functional_description:"Zinc finger protein CONSTANS-LIKE 2 (AHRD V1 *--- B9MSS7_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; NbS00018434g0003.1 protein AED:0.09 eAED:0.09 QI:195|1|1|1|0.85|0.87|8|118|289; (*GB) gi|40809925|dbj|BAD07294.1| (e_value=4e-160) prolyl 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=2e-19) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT4G33910.1 (e_value=2e-141) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:16256943-16258614 REVERSE LENGTH=288;; (*ITAG) Solyc02g092710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48279731-48285461 transcript_region:SL2.40ch02:48279731..48285461+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TYA6_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00008397g0002.1 protein AED:0.01 eAED:0.02 QI:0|0|0.5|1|0|0.5|2|361|252; (*GB) gi|357506095|ref|XP_003623336.1| (e_value=2e-25) hypothetical protein MTR_7g069710 [Medicago truncatula];; (*ITAG) Solyc09g005020.1.1 (e_value=3e-88) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:15851-16603 transcript_region:SL2.40ch09:15851..16603- functional_description:"Unknown Protein (AHRD V1)"; NbS00008397g0008.1 protein AED:0.09 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|0|1000; (*GB) gi|225439486|ref|XP_002269998.1| (e_value=0.0) PREDICTED: ethylene-overproduction protein 1-like [Vitis vinifera];; (*SWP) sp|O65020|ETO1_ARATH (e_value=0.0) Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2;; (*TAIR) AT3G51770.2 (e_value=0.0) | Symbols: ETO1 | tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203998 REVERSE LENGTH=959;; (*ITAG) Solyc10g076450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58747957-58751931 transcript_region:SL2.40ch10:58747957..58751931- go_terms:GO:0005515,GO:0005488 functional_description:"Ethylene-overproduction protein 1 (AHRD V1 **-- D7LTY2_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0005488 NbS00035989g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.25|1|1|4|0|537; (*GB) gi|359476350|ref|XP_002283782.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|Q6PAV2|HERC4_MOUSE (e_value=3e-23) Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2;; (*TAIR) AT5G11580.1 (e_value=7e-180) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:3718913-3721125 FORWARD LENGTH=553;; (*ITAG) Solyc08g066570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:52507401-52508681 transcript_region:SL2.40ch08:52507401..52508681+ go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 **-- B9QKU8_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00035989g0007.1 protein AED:0.31 eAED:0.45 QI:92|0.66|0.42|1|0.5|0.71|7|0|178; (*GB) gi|225429930|ref|XP_002283798.1| (e_value=3e-80) PREDICTED: nuclear pore complex protein Nup85 [Vitis vinifera];; (*SWP) sp|Q8RXH2|NUP85_ARATH (e_value=8e-71) Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85 PE=2 SV=1;; (*TAIR) AT4G32910.1 (e_value=6e-72) | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15881364-15885210 FORWARD LENGTH=716;; (*ITAG) Solyc08g066580.2.1 (e_value=3e-103) genomic_reference:SL2.40ch08 gene_region:52512630-52530812 transcript_region:SL2.40ch08:52512630..52530812- functional_description:"Nuclear pore complex protein Nup85 (AHRD V1 **-- NUP85_MOUSE); contains Interpro domain(s) IPR011502 Nucleoporin, Nup85-like "; NbS00006160g0005.1 protein AED:0.08 eAED:0.08 QI:277|1|1|1|0.66|0.75|4|325|146; (*GB) gi|388502304|gb|AFK39218.1| (e_value=6e-100) unknown [Lotus japonicus];; (*SWP) sp|Q9SVD7|UEV1D_ARATH (e_value=4e-97) Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1;; (*TAIR) AT3G52560.1 (e_value=3e-98) | Symbols: UEV1D-4, MMZ4, UEV1D | ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=146;; (*ITAG) Solyc10g083120.1.1 (e_value=4e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62310434-62314944 transcript_region:SL2.40ch10:62310434..62314944- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme family protein-like (AHRD V1 ***- Q3HVN0_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00006160g0002.1 protein AED:0.51 eAED:0.51 QI:0|0|0|1|1|1|2|0|64 NbS00009697g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|562; (*GB) gi|328497225|dbj|BAK18779.1| (e_value=0.0) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P93479|RETO_PAPSO (e_value=4e-141) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT5G44440.1 (e_value=3e-124) | Symbols: | FAD-binding Berberine family protein | chr5:17910694-17912295 REVERSE LENGTH=533;; (*ITAG) Solyc04g080400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00009697g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.8|0.9|0.88|0.9|10|0|824; (*GB) gi|225425863|ref|XP_002266185.1| (e_value=0.0) PREDICTED: cell division control protein 48 homolog C-like [Vitis vinifera];; (*SWP) sp|Q9SS94|CD48C_ARATH (e_value=0.0) Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2;; (*TAIR) AT3G01610.1 (e_value=0.0) | Symbols: CDC48C, emb1354 | cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820;; (*ITAG) Solyc01g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00009697g0010.1 protein AED:0.18 eAED:0.20 QI:0|0.83|0.85|1|0.83|0.85|7|73|367; (*GB) gi|359477001|ref|XP_002264011.2| (e_value=0.0) PREDICTED: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-like [Vitis vinifera];; (*SWP) sp|Q55694|MNMG_SYNY3 (e_value=6e-155) tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mnmG PE=3 SV=1;; (*TAIR) AT2G13440.1 (e_value=0.0) | Symbols: | glucose-inhibited division family A protein | chr2:5593270-5598296 REVERSE LENGTH=723;; (*ITAG) Solyc01g068290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69824288-69836410 transcript_region:SL2.40ch01:69824288..69836410- go_terms:GO:0002098,GO:0008033 functional_description:"tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG (AHRD V1 ***- B4VZ14_9CYAN); contains Interpro domain(s) IPR004416 Glucose-inhibited division protein A "; GO:0002098,GO:0008033 NbS00044999g0005.1 protein AED:0.33 eAED:0.33 QI:329|1|0.88|1|0.87|1|9|414|453; (*GB) gi|302142198|emb|CBI19401.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5BIM8|ERCC8_BOVIN (e_value=6e-40) DNA excision repair protein ERCC-8 OS=Bos taurus GN=ERCC8 PE=2 SV=1;; (*TAIR) AT1G27840.1 (e_value=0.0) | Symbols: ATCSA-1 | Transducin/WD40 repeat-like superfamily protein | chr1:9693332-9696257 REVERSE LENGTH=450;; (*ITAG) Solyc12g088340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62205919-62211834 transcript_region:SL2.40ch12:62205919..62211834+ functional_description:"WD repeat protein (AHRD V1 **-- B8MEA9_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbC25006242g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|302594419|gb|ADL59399.1| (e_value=3e-75) HJTR2GH1 protein [Solanum hjertingii];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=7e-18) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-19) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g009130.2.1 (e_value=1e-79) genomic_reference:SL2.40ch04 gene_region:2646823-2649379 transcript_region:SL2.40ch04:2646823..2649379+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00015097g0004.1 protein AED:0.53 eAED:0.53 QI:0|0|0.33|0.33|0.5|0.33|3|74|104 NbS00023456g0015.1 protein AED:0.21 eAED:0.22 QI:381|0.66|0.75|1|0.66|0.75|4|0|249; (*GB) gi|162568912|gb|ABY19382.1| (e_value=9e-163) putative staygreen protein [Nicotiana tabacum];; (*TAIR) AT4G22920.1 (e_value=2e-107) | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268;; (*ITAG) Solyc08g080090.2.1 (e_value=3e-141) genomic_reference:SL2.40ch08 gene_region:60579438-60582066 transcript_region:SL2.40ch08:60579438..60582066- functional_description:"Senescence-inducible chloroplast stay-green protein 2 (AHRD V1 **-- Q5EMP6_SOYBN)"; NbS00023456g0009.1 protein AED:0.39 eAED:0.39 QI:308|0.83|0.85|1|0.33|0.42|7|141|117; (*ITAG) Solyc09g005140.1.1 (e_value=2e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:130530-142052 transcript_region:SL2.40ch09:130530..142052- functional_description:"Unknown Protein (AHRD V1)"; NbS00023456g0005.1 protein AED:0.39 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|99; (*ITAG) Solyc04g050030.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00023456g0014.1 protein AED:0.14 eAED:0.18 QI:0|0.8|0.63|1|0.8|0.81|11|0|478; (*GB) gi|283837093|emb|CBH19891.1| (e_value=0.0) cell cycle switch 52A [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8L3Z8|FZR2_ARATH (e_value=0.0) Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1;; (*TAIR) AT4G22910.1 (e_value=0.0) | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483;; (*ITAG) Solyc08g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60574341-60578537 transcript_region:SL2.40ch08:60574341..60578537+ go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q9M7I2_MEDTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00061956g0005.1 protein AED:0.06 eAED:0.06 QI:90|1|1|1|0.71|0.75|8|416|349; (*GB) gi|225444339|ref|XP_002264460.1| (e_value=3e-106) PREDICTED: probable cardiolipin synthase 1 [Vitis vinifera];; (*SWP) sp|O01916|CRLS1_CAEEL (e_value=3e-28) Probable cardiolipin synthase 1 OS=Caenorhabditis elegans GN=crls-1 PE=2 SV=1;; (*TAIR) AT4G04870.1 (e_value=5e-96) | Symbols: CLS | cardiolipin synthase | chr4:2461904-2464004 REVERSE LENGTH=341;; (*ITAG) Solyc10g005290.2.1 (e_value=6e-171) genomic_reference:SL2.40ch10 gene_region:215116-219344 transcript_region:SL2.40ch10:215116..219344- go_terms:GO:0008808 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-*- A7HGL7_ANADF); contains Interpro domain(s) IPR000462 CDP-alcohol phosphatidyltransferase "; GO:0008808 NbS00008361g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.2|1|0.75|0.6|5|0|493; (*GB) gi|359431011|gb|AEV46316.1| (e_value=0.0) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|Q39692|INV2_DAUCA (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme 2 OS=Daucus carota GN=INV2 PE=3 SV=1;; (*TAIR) AT3G52600.1 (e_value=7e-158) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19509273 REVERSE LENGTH=590;; (*ITAG) Solyc09g010090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00005020g0015.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.2|5|0|385; (*GB) gi|392055998|gb|AFM52335.1| (e_value=0.0) anthocyanidin synthase 2 [Nicotiana tabacum];; (*SWP) sp|P51092|LDOX_PETHY (e_value=0.0) Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1;; (*TAIR) AT4G22880.2 (e_value=3e-153) | Symbols: LDOX, TDS4, TT18, ANS | leucoanthocyanidin dioxygenase | chr4:12004905-12006059 REVERSE LENGTH=356;; (*ITAG) Solyc08g080040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60549457-60551317 transcript_region:SL2.40ch08:60549457..60551317- go_terms:GO:0016706 functional_description:"Anthocyanidin synthase (AHRD V1 ***- D3XFG1_THECC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00005020g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|1|1|4|0|279; (*GB) gi|255537221|ref|XP_002509677.1| (e_value=2e-140) Alpha-expansin 7 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LN94|EXPA7_ARATH (e_value=5e-120) Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1;; (*TAIR) AT1G12560.1 (e_value=4e-121) | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26, EXPA7 | expansin A7 | chr1:4276557-4277693 FORWARD LENGTH=262;; (*ITAG) Solyc08g080060.2.1 (e_value=3e-167) genomic_reference:SL2.40ch08 gene_region:60562889-60564536 transcript_region:SL2.40ch08:60562889..60564536+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00005020g0017.1 protein AED:0.04 eAED:0.06 QI:198|0.9|0.81|1|0.7|0.72|11|320|336; (*GB) gi|255537217|ref|XP_002509675.1| (e_value=1e-170) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8H112|PGL1A_ARATH (e_value=1e-162) PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1;; (*TAIR) AT4G22890.2 (e_value=9e-164) | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157-12009175 FORWARD LENGTH=324;; (*ITAG) Solyc08g080050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60555455-60559957 transcript_region:SL2.40ch08:60555455..60559957+ functional_description:"PGR5-like protein 1A, chloroplastic (AHRD V1 ***- PGL1A_ARATH)"; NbS00011954g0005.1 protein AED:0.02 eAED:0.02 QI:30|1|0.66|1|1|1|3|0|285; (*GB) gi|255552543|ref|XP_002517315.1| (e_value=2e-132) 2,4-dienoyl-CoA reductase, putative [Ricinus communis];; (*SWP) sp|P28643|FABG_CUPLA (e_value=2e-31) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1;; (*TAIR) AT3G55290.1 (e_value=1e-119) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:20502653-20503730 FORWARD LENGTH=280;; (*ITAG) Solyc10g078360.1.1 (e_value=3e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59509321-59510895 transcript_region:SL2.40ch10:59509321..59510895- go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00011761g0006.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|2|0|192; (*GB) gi|195542260|gb|AAR87850.2| (e_value=2e-37) fertilization-related kinase 1 [Solanum chacoense];; (*TAIR) AT4G36950.1 (e_value=1e-18) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc06g065790.1.1 (e_value=4e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011761g0009.1 protein AED:0.15 eAED:0.17 QI:0|0|0|1|0|0.5|2|0|909; (*GB) gi|359487946|ref|XP_002266568.2| (e_value=4e-171) PREDICTED: uncharacterized protein LOC100255461 [Vitis vinifera];; (*SWP) sp|Q9UXR9|DNAJ_METTE (e_value=4e-12) Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G27240.1 (e_value=9e-98) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:9597552-9600866 FORWARD LENGTH=1104;; (*ITAG) Solyc01g098250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80592618-80596242 transcript_region:SL2.40ch01:80592618..80596242+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00011761g0008.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|2|0|242; (*GB) gi|359487946|ref|XP_002266568.2| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100255461 [Vitis vinifera];; (*TAIR) AT5G27240.1 (e_value=9e-32) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:9597552-9600866 FORWARD LENGTH=1104;; (*ITAG) Solyc01g098250.2.1 (e_value=3e-100) genomic_reference:SL2.40ch01 gene_region:80592618-80596242 transcript_region:SL2.40ch01:80592618..80596242+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00028413g0004.1 protein AED:0.16 eAED:0.19 QI:14|0|0|0.71|0|0.42|7|0|407; (*GB) gi|225454522|ref|XP_002277387.1| (e_value=5e-77) PREDICTED: putative RING-H2 finger protein ATL21A [Vitis vinifera];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=2e-56) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT2G46495.1 (e_value=1e-57) | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372;; (*ITAG) Solyc01g095840.1.1 (e_value=5e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78757140-78758791 transcript_region:SL2.40ch01:78757140..78758791- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00045447g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|225427177|ref|XP_002277740.1| (e_value=2e-25) PREDICTED: RING-H2 finger protein ATL29 [Vitis vinifera];; (*SWP) sp|O49691|ATL29_ARATH (e_value=7e-17) RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=2 SV=1;; (*TAIR) AT4G17920.1 (e_value=5e-18) | Symbols: | RING/U-box superfamily protein | chr4:9963221-9964090 REVERSE LENGTH=289;; (*ITAG) Solyc08g076800.2.1 (e_value=4e-43) genomic_reference:SL2.40ch08 gene_region:57874533-57875579 transcript_region:SL2.40ch08:57874533..57875579+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013565g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|297740917|emb|CBI31099.3| (e_value=1e-60) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=3e-56) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-53) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=3e-58) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00013565g0007.1 protein AED:0.48 eAED:0.48 QI:0|0.33|0.3|0.5|0.88|0.9|10|0|455; (*GB) gi|68300844|gb|AAY89360.1| (e_value=0.0) RNA polymerase IV largest subunit [Solanum lycopersicum];; (*SWP) sp|Q9LQ02|NRPD1_ARATH (e_value=2e-101) DNA-directed RNA polymerase D subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=1;; (*TAIR) AT1G63020.2 (e_value=1e-102) | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453;; (*ITAG) Solyc08g080210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60700882-60708083 transcript_region:SL2.40ch08:60700882..60708083- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9GKP9_POPTR); contains Interpro domain(s) IPR000722 RNA polymerase, alpha subunit "; GO:0006350 NbS00013565g0006.1 protein AED:0.30 eAED:0.49 QI:0|0|0|1|0|0|2|0|190; (*GB) gi|308051831|gb|ADO00338.1| (e_value=3e-29) PsbC [Lonicera nigra];; (*SWP) sp|Q2PMT9|PSBC_SOYBN (e_value=4e-28) Photosystem II CP43 chlorophyll apoprotein OS=Glycine max GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=4e-29) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473; NbS00021187g0004.1 protein AED:0.23 eAED:0.42 QI:0|0|0|0.5|1|1|4|0|215; (*GB) gi|388510358|gb|AFK43245.1| (e_value=3e-20) unknown [Medicago truncatula];; (*SWP) sp|Q8LGD5|MKS1_ARATH (e_value=6e-11) Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2;; (*TAIR) AT3G18690.1 (e_value=5e-12) | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222;; (*ITAG) Solyc11g005720.1.1 (e_value=2e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:572324-573019 transcript_region:SL2.40ch11:572324..573019- functional_description:"VQ motif family protein (AHRD V1 ***- B6SZE5_MAIZE); contains Interpro domain(s) IPR008889 VQ "; NbS00021187g0105.1 protein AED:0.15 eAED:0.16 QI:189|0.62|0.55|1|0.75|0.77|9|0|668 NbS00014861g0015.1 protein AED:0.18 eAED:0.18 QI:0|0.76|0.57|1|1|1|14|575|2667; (*GB) gi|359494312|ref|XP_002268896.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Vitis vinifera];; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc07g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00014861g0014.1 protein AED:0.35 eAED:0.35 QI:403|0.8|0.66|1|0.6|0.33|6|0|1194; (*GB) gi|359494312|ref|XP_002268896.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Vitis vinifera];; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.2 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20892910 REVERSE LENGTH=3681;; (*ITAG) Solyc07g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00014861g0005.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|73; (*GB) gi|359494187|ref|XP_003634735.1| (e_value=8e-32) PREDICTED: RPM1-interacting protein 4-like [Vitis vinifera];; (*TAIR) AT5G55850.1 (e_value=1e-29) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc07g065640.2.1 (e_value=7e-40) genomic_reference:SL2.40ch07 gene_region:64560188-64564962 transcript_region:SL2.40ch07:64560188..64564962+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00006385g0003.1 protein AED:0.14 eAED:0.39 QI:0|0|0|1|0|0.33|3|0|138; (*GB) gi|356574545|ref|XP_003555406.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100800621 [Glycine max];; (*ITAG) Solyc04g071500.2.1 (e_value=3e-24) genomic_reference:SL2.40ch04 gene_region:56073197-56075929 transcript_region:SL2.40ch04:56073197..56075929- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00006385g0105.1 protein AED:0.10 eAED:0.10 QI:0|1|0.83|1|0.90|0.91|12|0|1057 NbS00014965g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|606|200; (*GB) gi|224066919|ref|XP_002302279.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78020.1 (e_value=5e-25) | Symbols: | Protein of unknown function (DUF581) | chr1:29338787-29339491 FORWARD LENGTH=162;; (*ITAG) Solyc04g072780.2.1 (e_value=3e-53) genomic_reference:SL2.40ch04 gene_region:57350803-57351888 transcript_region:SL2.40ch04:57350803..57351888+ functional_description:"Genomic DNA chromosome 5 TAC clone K14A3 (AHRD V1 *--- Q9FGQ9_ARATH); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00024485g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|3|0|317; (*GB) gi|356505847|ref|XP_003521701.1| (e_value=3e-127) PREDICTED: DEAD-box ATP-dependent RNA helicase 35-like [Glycine max];; (*SWP) sp|Q9LU46|RH35_ARATH (e_value=2e-116) DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1;; (*TAIR) AT5G51280.1 (e_value=1e-117) | Symbols: | DEAD-box protein abstrakt, putative | chr5:20841456-20843645 FORWARD LENGTH=591;; (*ITAG) Solyc03g117440.2.1 (e_value=6e-138) genomic_reference:SL2.40ch03 gene_region:60661188-60664340 transcript_region:SL2.40ch03:60661188..60664340+ go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00024485g0009.1 protein AED:0.16 eAED:0.16 QI:0|1|0.87|1|1|1|8|0|769; (*GB) gi|457744|emb|CAA54869.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P31414|AVP1_ARATH (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc03g117480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60677249-60682108 transcript_region:SL2.40ch03:60677249..60682108- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (AHRD V1 **** C7HW54_9FIRM); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00024485g0010.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.5|0.75|0.66|0.75|4|0|130; (*GB) gi|225463597|ref|XP_002271539.1| (e_value=6e-79) PREDICTED: calcineurin subunit B isoform 1 [Vitis vinifera];; (*SWP) sp|P42322|CANB1_NAEGR (e_value=2e-24) Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1;; (*TAIR) AT3G18430.2 (e_value=3e-77) | Symbols: | Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175;; (*ITAG) Solyc03g117470.2.1 (e_value=6e-87) genomic_reference:SL2.40ch03 gene_region:60668427-60673467 transcript_region:SL2.40ch03:60668427..60673467- go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 *-*- B6U4N5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00005805g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|287; (*GB) gi|297734737|emb|CBI16971.3| (e_value=1e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV87|BRN2_ARATH (e_value=1e-81) Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1;; (*TAIR) AT4G10350.1 (e_value=9e-83) | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing protein 70 | chr4:6415287-6416829 REVERSE LENGTH=341;; (*ITAG) Solyc06g063430.1.1 (e_value=8e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36497407-36500202 transcript_region:SL2.40ch06:36497407..36500202- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1Q0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00005805g0012.1 protein AED:0.23 eAED:0.23 QI:226|0.5|0.33|1|0.5|0.33|3|0|239; (*GB) gi|359493589|ref|XP_002266319.2| (e_value=2e-38) PREDICTED: RING-H2 finger protein ATL7-like [Vitis vinifera];; (*SWP) sp|Q9SN28|ATL7_ARATH (e_value=2e-34) RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1;; (*TAIR) AT4G10150.1 (e_value=2e-35) | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236;; (*ITAG) Solyc06g064440.2.1 (e_value=1e-68) genomic_reference:SL2.40ch06 gene_region:36514027-36517636 transcript_region:SL2.40ch06:36514027..36517636- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005805g0002.1 protein AED:0.37 eAED:0.38 QI:63|0|0.5|1|0|1|2|0|239; (*GB) gi|357456083|ref|XP_003598322.1| (e_value=4e-79) hypothetical protein MTR_3g010290 [Medicago truncatula];; (*SWP) sp|Q84WF5|VAMPL_ARATH (e_value=8e-61) Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1;; (*TAIR) AT4G10170.2 (e_value=6e-69) | Symbols: | SNARE-like superfamily protein | chr4:6344587-6345351 FORWARD LENGTH=254;; (*ITAG) Solyc06g064430.1.1 (e_value=6e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36510375-36511100 transcript_region:SL2.40ch06:36510375..36511100- go_terms:GO:0006810 functional_description:"Vesicle-associated membrane protein 724 (AHRD V1 *--- VA724_ARATH); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00018711g0010.1 protein AED:0.00 eAED:0.00 QI:137|1|1|1|1|1|2|286|310; (*GB) gi|357480439|ref|XP_003610505.1| (e_value=3e-66) hypothetical protein MTR_4g132940 [Medicago truncatula];; (*TAIR) AT1G62420.1 (e_value=2e-39) | Symbols: | Protein of unknown function (DUF506) | chr1:23102937-23104604 REVERSE LENGTH=283;; (*ITAG) Solyc11g012120.1.1 (e_value=5e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5041281-5042288 transcript_region:SL2.40ch11:5041281..5042288- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00018711g0002.1 protein AED:0.20 eAED:0.20 QI:268|0.9|1|1|0.6|0.54|11|283|228; (*GB) gi|225433841|ref|XP_002263182.1| (e_value=2e-94) PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|P41252|SYIC_HUMAN (e_value=4e-17) Isoleucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2;; (*TAIR) AT4G10320.1 (e_value=1e-83) | Symbols: | tRNA synthetase class I (I, L, M and V) family protein | chr4:6397526-6404509 REVERSE LENGTH=1190;; (*ITAG) Solyc11g012140.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5060237-5076822 transcript_region:SL2.40ch11:5060237..5076822- go_terms:GO:0005737 functional_description:"Isoleucyl-tRNA synthetase (AHRD V1 ***- Q6PGU7_DANRE); contains Interpro domain(s) IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR002301 Isoleucyl-tRNA synthetase, class Ia IPR018353 Isoleucyl-tRNA synthetase "; GO:0005737 NbS00018711g0004.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|67 NbS00018711g0011.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|1|1|2|218|171; (*GB) gi|359495565|ref|XP_002271669.2| (e_value=8e-60) PREDICTED: blue copper protein [Vitis vinifera];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=3e-15) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT3G27200.1 (e_value=3e-22) | Symbols: | Cupredoxin superfamily protein | chr3:10043738-10044340 REVERSE LENGTH=174;; (*ITAG) Solyc11g012130.1.1 (e_value=1e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5057082-5059179 transcript_region:SL2.40ch11:5057082..5059179+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00001474g0010.1 protein AED:0.31 eAED:0.31 QI:341|0.8|0.81|1|0.8|0.72|11|555|360; (*GB) gi|217074984|gb|ACJ85852.1| (e_value=0.0) unknown [Medicago truncatula];; (*SWP) sp|Q70DU8|AL3H1_ARATH (e_value=1e-174) Aldehyde dehydrogenase family 3 member H1 OS=Arabidopsis thaliana GN=ALDH3H1 PE=2 SV=2;; (*TAIR) AT1G44170.3 (e_value=1e-176) | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase 3H1 | chr1:16796564-16798574 REVERSE LENGTH=421;; (*ITAG) Solyc06g060250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34593565-34601818 transcript_region:SL2.40ch06:34593565..34601818- go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase family protein expressed (AHRD V1 **** Q53NG8_ORYSJ); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00001474g0004.1 protein AED:0.21 eAED:0.46 QI:0|0|0|1|1|1|2|0|66 NbS00001474g0002.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|1|1|3|0|415; (*GB) gi|298204500|emb|CBI23775.3| (e_value=9e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|P59910|DJB13_HUMAN (e_value=5e-41) DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1;; (*TAIR) AT1G11040.1 (e_value=2e-73) | Symbols: | HSP40/DnaJ peptide-binding protein | chr1:3679225-3680924 REVERSE LENGTH=438;; (*ITAG) Solyc06g060240.1.1 (e_value=3e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34591029-34593320 transcript_region:SL2.40ch06:34591029..34593320+ go_terms:GO:0006457 functional_description:"Chaperone protein dnaJ 3 (AHRD V1 *-*- DNAJ3_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0006457 NbS00053922g0010.1 protein AED:0.20 eAED:0.22 QI:0|0.90|0.66|1|0.81|0.91|12|0|766; (*GB) gi|255556394|ref|XP_002519231.1| (e_value=0.0) map3k delta-1 protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-80) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=0.0) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc12g099250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64789614-64795487 transcript_region:SL2.40ch12:64789614..64795487- go_terms:GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7KVQ9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0006355,GO:0007165 NbS00053922g0012.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|1|0.75|0.6|5|0|325; (*GB) gi|356529131|ref|XP_003533150.1| (e_value=1e-159) PREDICTED: probable pectinesterase 67-like [Glycine max];; (*SWP) sp|Q9LSP1|PME67_ARATH (e_value=2e-141) Probable pectinesterase 67 OS=Arabidopsis thaliana GN=PME67 PE=2 SV=1;; (*TAIR) AT3G17060.1 (e_value=2e-142) | Symbols: | Pectin lyase-like superfamily protein | chr3:5816953-5818458 REVERSE LENGTH=344;; (*ITAG) Solyc12g099230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64782195-64785423 transcript_region:SL2.40ch12:64782195..64785423+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9HIN1_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00053922g0008.1 protein AED:0.20 eAED:0.20 QI:112|1|1|1|0.75|0.6|5|212|109; (*GB) gi|356564876|ref|XP_003550673.1| (e_value=2e-47) PREDICTED: huntingtin-interacting protein K-like [Glycine max];; (*TAIR) AT3G06610.1 (e_value=4e-44) | Symbols: | DNA-binding enhancer protein-related | chr3:2060837-2061845 FORWARD LENGTH=115;; (*ITAG) Solyc12g099240.1.1 (e_value=4e-60) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64786587-64788747 transcript_region:SL2.40ch12:64786587..64788747+ functional_description:"Huntingtin interacting protein K (AHRD V1 ***- B6THW6_MAIZE)"; NbS00008205g0005.1 protein AED:0.39 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|88 NbS00008205g0009.1 protein AED:0.17 eAED:0.17 QI:293|1|0.8|1|0.75|1|5|0|382; (*GB) gi|317451426|emb|CBV37053.1| (e_value=4e-156) GDSL lipase-like chlorogenate-dependent caffeoyltransferase precursor [Solanum lycopersicum];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=2e-90) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT5G03980.1 (e_value=3e-84) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc01g099050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81149642-81151267 transcript_region:SL2.40ch01:81149642..81151267- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00052904g0006.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0.33|1|0.5|0.66|3|0|357; (*GB) gi|225438801|ref|XP_002283225.1| (e_value=1e-175) PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera];; (*SWP) sp|Q6P1R4|DUS1L_HUMAN (e_value=1e-67) tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1;; (*TAIR) AT5G67220.1 (e_value=3e-158) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423;; (*ITAG) Solyc03g044270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12574009-12578579 transcript_region:SL2.40ch03:12574009..12578579- go_terms:GO:0005515,GO:0017150 functional_description:"tRNA-dihydrouridine synthase 1-like protein (AHRD V1 **** D3BAF6_POLPA); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0005515,GO:0017150 NbS00052904g0005.1 protein AED:0.53 eAED:0.55 QI:69|0.33|0|1|0|0.25|4|0|169; (*GB) gi|37719049|emb|CAE45567.1| (e_value=1e-63) SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=5e-57) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=4e-58) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc03g044260.2.1 (e_value=2e-64) genomic_reference:SL2.40ch03 gene_region:12566720-12571878 transcript_region:SL2.40ch03:12566720..12571878+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00014089g0001.1 protein AED:0.07 eAED:0.18 QI:0|0|0|1|1|1|3|0|343; (*GB) gi|77416925|gb|ABA81858.1| (e_value=5e-172) brittle 1 protein-like [Solanum tuberosum];; (*SWP) sp|P29518|BT1_MAIZE (e_value=7e-79) Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1;; (*TAIR) AT4G32400.1 (e_value=5e-119) | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondrial substrate carrier family protein | chr4:15638686-15640238 FORWARD LENGTH=392;; (*ITAG) Solyc08g061090.2.1 (e_value=4e-170) genomic_reference:SL2.40ch08 gene_region:43863377-43867169 transcript_region:SL2.40ch08:43863377..43867169+ go_terms:GO:0005310 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MYP8_MICPS); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0005310 NbS00045523g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|359479629|ref|XP_003632307.1| (e_value=5e-32) PREDICTED: uncharacterized protein LOC100855273 [Vitis vinifera];; (*TAIR) AT3G22550.1 (e_value=2e-21) | Symbols: | Protein of unknown function (DUF581) | chr3:7991827-7992805 REVERSE LENGTH=267;; (*ITAG) Solyc09g065390.1.1 (e_value=4e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59104428-59104982 transcript_region:SL2.40ch09:59104428..59104982- functional_description:"Expressed protein 3&apos-partial (Fragment) (AHRD V1 ***- Q75H88_ORYSJ)"; NbS00045523g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|224062428|ref|XP_002300832.1| (e_value=0.0) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9M1W7|SKI30_ARATH (e_value=2e-179) F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2;; (*TAIR) AT3G63220.2 (e_value=2e-180) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358598 REVERSE LENGTH=352;; (*ITAG) Solyc09g065400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:59112810-59113847 transcript_region:SL2.40ch09:59112810..59113847- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbC24141102g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|255684836|gb|ACU27907.1| (e_value=2e-53) actin [Nicotiana tabacum];; (*SWP) sp|P93376|ACT6_TOBAC (e_value=3e-53) Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=8e-52) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=5e-53) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00000920g0004.1 protein AED:0.33 eAED:0.34 QI:0|0.53|0.62|0.93|0.73|0.75|16|415|503; (*GB) gi|356531287|ref|XP_003534209.1| (e_value=6e-135) PREDICTED: probable plastidic glucose transporter 2-like isoform 2 [Glycine max];; (*SWP) sp|Q9FYG3|PLST2_ARATH (e_value=3e-87) Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1;; (*TAIR) AT1G79820.3 (e_value=3e-108) | Symbols: SGB1 | Major facilitator superfamily protein | chr1:30022581-30026771 REVERSE LENGTH=447;; (*ITAG) Solyc07g020790.2.1 (e_value=2e-105) genomic_reference:SL2.40ch07 gene_region:13483462-13489718 transcript_region:SL2.40ch07:13483462..13489718- go_terms:GO:0015519 functional_description:"D-xylose-proton symporter (D-xylose transporter) (AHRD V1 **** B5CJI7_SALET); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00007376g0001.1 protein AED:0.21 eAED:0.21 QI:615|1|1|1|0.7|0.45|11|465|98; (*GB) gi|9885803|gb|AAG01534.1|AF289467_1 (e_value=2e-65) cyclin-dependent kinase A:4 [Nicotiana tabacum];; (*SWP) sp|Q38772|CDC2A_ANTMA (e_value=3e-61) Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2;; (*TAIR) AT3G48750.1 (e_value=1e-48) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc12g095860.1.1 (e_value=9e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63316141-63319581 transcript_region:SL2.40ch12:63316141..63319581- go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** B5X1T4_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00009754g0007.1 protein AED:0.21 eAED:0.23 QI:694|0.77|0.8|1|0.44|0.5|10|509|249; (*GB) gi|225451130|ref|XP_002266266.1| (e_value=9e-52) PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera];; (*SWP) sp|B9DHD7|VAP22_ARATH (e_value=3e-20) Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1;; (*TAIR) AT1G08820.2 (e_value=2e-21) | Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386;; (*ITAG) Solyc01g098200.2.1 (e_value=6e-130) genomic_reference:SL2.40ch01 gene_region:80548656-80555399 transcript_region:SL2.40ch01:80548656..80555399- go_terms:GO:0005515 functional_description:"Vesicle-associated membrane protein-associated protein A (AHRD V1 **-- B6UGD8_MAIZE); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005515 NbS00009754g0008.1 protein AED:0.31 eAED:0.32 QI:379|0.81|0.88|1|0.75|0.76|17|74|589; (*GB) gi|350534444|ref|NP_001233885.1| (e_value=0.0) (Sodium/potassium)/proton exchanger 4 [Solanum lycopersicum];; (*SWP) sp|Q56XP4|NHX2_ARATH (e_value=0.0) Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2;; (*TAIR) AT3G05030.1 (e_value=0.0) | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger 2 | chr3:1393456-1396784 REVERSE LENGTH=546;; (*ITAG) Solyc01g098190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80542394-80548100 transcript_region:SL2.40ch01:80542394..80548100+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA2_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00025899g0015.1 protein AED:0.12 eAED:0.12 QI:77|1|0.83|1|0.4|0.66|6|0|318; (*GB) gi|224078830|ref|XP_002305644.1| (e_value=4e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=2e-52) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1;; (*TAIR) AT4G03270.1 (e_value=1e-53) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc02g079370.2.1 (e_value=4e-154) genomic_reference:SL2.40ch02 gene_region:38540098-38541854 transcript_region:SL2.40ch02:38540098..38541854+ go_terms:GO:0004693 functional_description:"Cyclin-D6-1 (AHRD V1 **** CCD61_ORYSJ); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004693 NbS00025899g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0.5|1|0|0.5|2|428|240; (*GB) gi|359485725|ref|XP_003633323.1| (e_value=8e-106) PREDICTED: uncharacterized protein C167.05-like isoform 4 [Vitis vinifera];; (*TAIR) AT1G11360.4 (e_value=2e-97) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc02g079410.2.1 (e_value=1e-134) genomic_reference:SL2.40ch02 gene_region:38558035-38560976 transcript_region:SL2.40ch02:38558035..38560976+ go_terms:GO:0006950,GO:0005737 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950,GO:0005737 NbS00025899g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|255567473|ref|XP_002524716.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27310.1 (e_value=9e-35) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc02g079430.2.1 (e_value=2e-50) genomic_reference:SL2.40ch02 gene_region:38574418-38575502 transcript_region:SL2.40ch02:38574418..38575502- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00025899g0018.1 protein AED:0.17 eAED:0.17 QI:172|1|1|1|1|1|2|517|304; (*GB) gi|297745663|emb|CBI40874.3| (e_value=1e-179) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6P829|NOSIP_XENTR (e_value=1e-42) Nitric oxide synthase-interacting protein OS=Xenopus tropicalis GN=nosip PE=2 SV=1;; (*TAIR) AT1G61620.1 (e_value=2e-157) | Symbols: | phosphoinositide binding | chr1:22737653-22739209 FORWARD LENGTH=310;; (*ITAG) Solyc02g079400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38554066-38556783 transcript_region:SL2.40ch02:38554066..38556783- go_terms:GO:0005515 functional_description:"Nitric oxide synthase interacting protein (AHRD V1 ***- B6TCA5_MAIZE); contains Interpro domain(s) IPR016818 Nitric oxide synthase-interacting "; GO:0005515 NbS00025899g0021.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.66|1|0.4|0.5|6|680|276; (*GB) gi|359495710|ref|XP_003635067.1| (e_value=2e-100) PREDICTED: uncharacterized protein LOC100246768 isoform 1 [Vitis vinifera];; (*TAIR) AT1G11380.1 (e_value=3e-81) | Symbols: | PLAC8 family protein | chr1:3832695-3833921 FORWARD LENGTH=254;; (*ITAG) Solyc02g079390.2.1 (e_value=4e-134) genomic_reference:SL2.40ch02 gene_region:38547493-38550058 transcript_region:SL2.40ch02:38547493..38550058- functional_description:"Uncharacterized Cys-rich domain (AHRD V1 **-- Q2HTU7_MEDTR); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00045760g0004.1 protein AED:0.08 eAED:0.08 QI:311|1|1|1|0.5|0.4|5|495|250; (*GB) gi|225458354|ref|XP_002283278.1| (e_value=3e-138) PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-69) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G47740.2 (e_value=4e-107) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:17567903-17569035 FORWARD LENGTH=279;; (*ITAG) Solyc01g109430.2.1 (e_value=1e-178) genomic_reference:SL2.40ch01 gene_region:88144922-88146935 transcript_region:SL2.40ch01:88144922..88146935- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00056232g0004.1 protein AED:0.02 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|255558984|ref|XP_002520515.1| (e_value=7e-21) Transcriptional regulator SUPERMAN, putative [Ricinus communis];; (*SWP) sp|Q9SR34|TAC1_ARATH (e_value=8e-15) Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1;; (*TAIR) AT3G53820.1 (e_value=1e-17) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr3:19938706-19939134 FORWARD LENGTH=142;; (*ITAG) Solyc09g011110.1.1 (e_value=8e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4451097-4451645 transcript_region:SL2.40ch09:4451097..4451645- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTZ1_ZEAMP); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00038143g0004.1 protein AED:0.06 eAED:0.06 QI:106|1|1|1|0|0|2|157|79 NbS00014667g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0.92|1|0.91|0.84|13|370|404; (*GB) gi|51949800|gb|AAU14832.1| (e_value=0.0) adenosine kinase isoform 1S [Nicotiana tabacum];; (*SWP) sp|Q9LZG0|ADK2_ARATH (e_value=0.0) Adenosine kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=1 SV=1;; (*TAIR) AT5G03300.1 (e_value=0.0) | Symbols: ADK2 | adenosine kinase 2 | chr5:796573-798997 FORWARD LENGTH=345;; (*ITAG) Solyc09g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1440058-1444221 transcript_region:SL2.40ch09:1440058..1444221+ go_terms:GO:0004001 functional_description:"Adenosine kinase (AHRD V1 **** D2D2Z6_GOSHI); contains Interpro domain(s) IPR001805 Adenosine kinase "; GO:0004001 NbS00025840g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.71|0.5|1|1|1|8|636|402; (*GB) gi|225446402|ref|XP_002274667.1| (e_value=2e-92) PREDICTED: uncharacterized protein LOC100254110 [Vitis vinifera];; (*SWP) sp|Q54HG4|RMP_DICDI (e_value=3e-22) RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2;; (*TAIR) AT1G03760.1 (e_value=3e-60) | Symbols: | Prefoldin chaperone subunit family protein | chr1:941211-943320 REVERSE LENGTH=391;; (*ITAG) Solyc07g053860.2.1 (e_value=3e-119) genomic_reference:SL2.40ch07 gene_region:59592688-59601226 transcript_region:SL2.40ch07:59592688..59601226+ go_terms:GO:0016272 functional_description:"Unconventional prefoldin RPB5 interactor (AHRD V1 *--- RMP_HUMAN); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0016272 NbS00025840g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|1|1|10|305|436; (*GB) gi|255581050|ref|XP_002531341.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94AA1|UN933_ARATH (e_value=0.0) UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1;; (*TAIR) AT3G09470.2 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:2911668-2914410 REVERSE LENGTH=437;; (*ITAG) Solyc09g010470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3830689-3838026 transcript_region:SL2.40ch09:3830689..3838026+ go_terms:GO:0015459,GO:0005515 functional_description:"UNC93-like protein MFSD11 (AHRD V1 **-- MFS11_MOUSE); contains Interpro domain(s) IPR010291 Protein of unknown function DUF895, eukaryotic "; GO:0015459,GO:0005515 NbS00006081g0003.1 protein AED:0.18 eAED:0.18 QI:20|0.73|0.81|1|0.8|0.75|16|0|929; (*GB) gi|225456709|ref|XP_002274135.1| (e_value=0.0) PREDICTED: ABC transporter A family member 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q84K47|AB2A_ARATH (e_value=0.0) ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1;; (*TAIR) AT3G47730.1 (e_value=0.0) | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassette A2 | chr3:17594342-17598828 REVERSE LENGTH=983;; (*ITAG) Solyc06g070940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39950899-39956171 transcript_region:SL2.40ch06:39950899..39956171+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00054180g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.6|1|1|1|5|0|278; (*GB) gi|302143192|emb|CBI20487.3| (e_value=5e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=5e-50) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT4G27250.1 (e_value=5e-84) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13642803-13644425 REVERSE LENGTH=354;; (*ITAG) Solyc12g005350.1.1 (e_value=4e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:216225-218423 transcript_region:SL2.40ch12:216225..218423+ go_terms:GO:0044237,GO:0008152 functional_description:"Dihydroflavonol-4-reductase (AHRD V1 ***- B6TUD3_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00012897g0003.1 protein AED:0.08 eAED:0.08 QI:61|1|1|1|1|1|8|303|406; (*GB) gi|270267863|gb|ACZ65511.1| (e_value=0.0) Tap46 [Nicotiana benthamiana];; (*SWP) sp|Q8LDQ4|TAP46_ARATH (e_value=3e-165) PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2;; (*TAIR) AT5G53000.1 (e_value=2e-166) | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405;; (*ITAG) Solyc01g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:766543-772337 transcript_region:SL2.40ch01:766543..772337- go_terms:GO:0008601 functional_description:"PP2A regulatory subunit TAP46 (AHRD V1 **-- B6TVR5_MAIZE); contains Interpro domain(s) IPR007304 TAP42-like protein "; GO:0008601 NbS00012897g0022.1 protein AED:0.12 eAED:0.13 QI:0|0.83|0.71|1|1|1|7|39|394; (*GB) gi|28628302|gb|AAO38707.1| (e_value=0.0) cation diffusion facilitator 8 [Stylosanthes hamata];; (*SWP) sp|Q10PP8|MTP4_ORYSJ (e_value=0.0) Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1;; (*TAIR) AT3G58060.1 (e_value=9e-177) | Symbols: | Cation efflux family protein | chr3:21497778-21499676 REVERSE LENGTH=411;; (*ITAG) Solyc12g100300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65413779-65415642 transcript_region:SL2.40ch12:65413779..65415642+ go_terms:GO:0016020 functional_description:"Cation-efflux pump fieF (AHRD V1 ***- FIEF_KLEPN); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00012897g0008.1 protein AED:0.31 eAED:0.31 QI:351|0.5|0.6|1|0.5|0.2|5|173|215; (*GB) gi|225435638|ref|XP_002285659.1| (e_value=7e-80) PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Vitis vinifera];; (*SWP) sp|Q9M2P4|SINA2_ARATH (e_value=4e-71) E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1;; (*TAIR) AT3G58040.1 (e_value=3e-72) | Symbols: SINAT2 | seven in absentia of Arabidopsis 2 | chr3:21489612-21491085 FORWARD LENGTH=308;; (*ITAG) Solyc01g006190.2.1 (e_value=2e-105) genomic_reference:SL2.40ch01 gene_region:819250-823951 transcript_region:SL2.40ch01:819250..823951- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00012897g0019.1 protein AED:0.36 eAED:0.36 QI:0|0.90|0.91|1|0.54|0.58|12|309|371; (*GB) gi|359489946|ref|XP_002268035.2| (e_value=3e-168) PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera];; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=2e-145) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2;; (*TAIR) AT2G44150.1 (e_value=2e-146) | Symbols: ASHH3, SDG7 | histone-lysine N-methyltransferase ASHH3 | chr2:18258863-18261003 FORWARD LENGTH=363;; (*ITAG) Solyc12g100290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65395458-65407145 transcript_region:SL2.40ch12:65395458..65407145+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00012897g0004.1 protein AED:0.19 eAED:0.20 QI:1551|0|0.5|1|0|0.5|2|0|241; (*GB) gi|225437166|ref|XP_002274823.1| (e_value=4e-45) PREDICTED: uncharacterized protein LOC100254442 [Vitis vinifera];; (*TAIR) AT3G63390.1 (e_value=1e-32) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23411416-23411943 REVERSE LENGTH=175;; (*ITAG) Solyc12g100320.1.1 (e_value=2e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65427340-65429750 transcript_region:SL2.40ch12:65427340..65429750- functional_description:"Unknown Protein (AHRD V1)"; NbS00039535g0006.1 protein AED:0.00 eAED:0.00 QI:148|1|1|1|1|1|2|123|257; (*GB) gi|224129664|ref|XP_002328772.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g103700.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:84024082-84025180 transcript_region:SL2.40ch01:84024082..84025180+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00039535g0007.1 protein AED:0.28 eAED:0.29 QI:0|1|0.66|1|1|1|3|0|183; (*GB) gi|255576215|ref|XP_002529001.1| (e_value=2e-57) Nitrogen fixation protein nifU, putative [Ricinus communis];; (*SWP) sp|Q93W20|NIFU2_ARATH (e_value=2e-55) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1;; (*TAIR) AT5G49940.2 (e_value=4e-57) | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr5:20315464-20317067 FORWARD LENGTH=185;; (*ITAG) Solyc01g103710.2.1 (e_value=5e-65) genomic_reference:SL2.40ch01 gene_region:84025720-84029325 transcript_region:SL2.40ch01:84025720..84029325+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_BUCCC); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00010213g0011.1 protein AED:0.35 eAED:0.51 QI:215|0.25|0.4|0.8|0.25|0.2|5|0|112; (*ITAG) Solyc04g019320.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:11580146-11581250 transcript_region:SL2.40ch04:11580146..11581250+ functional_description:"Helicase-like protein (AHRD V1 ***- Q6YTQ6_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00010213g0014.1 protein AED:0.37 eAED:0.38 QI:0|0.7|0.54|0.90|0.5|0.36|11|0|504; (*GB) gi|225435925|ref|XP_002267920.1| (e_value=0.0) PREDICTED: cysteine desulfurase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93WX6|NFS2_ARATH (e_value=0.0) Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1;; (*TAIR) AT1G08490.1 (e_value=0.0) | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | chloroplastic NIFS-like cysteine desulfurase | chr1:2685980-2688547 REVERSE LENGTH=463;; (*ITAG) Solyc05g055000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63922322-63931643 transcript_region:SL2.40ch05:63922322..63931643+ go_terms:GO:0031071,GO:0009000 functional_description:"Cysteine desulfurase (AHRD V1 **** Q10WM4_TRIEI); contains Interpro domain(s) IPR010970 Cysteine desulfurase, SufS "; GO:0031071,GO:0009000 NbS00010213g0008.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|1|1|2|0|96; (*ITAG) Solyc11g012460.1.1 (e_value=8e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5297608-5298810 transcript_region:SL2.40ch11:5297608..5298810+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00003918g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|0|1|0|108; (*ITAG) Solyc11g039970.1.1 (e_value=8e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:28093903-28094332 transcript_region:SL2.40ch11:28093903..28094332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057827g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|357466501|ref|XP_003603535.1| (e_value=4e-11) hypothetical protein MTR_3g108830 [Medicago truncatula];; (*ITAG) Solyc08g069020.1.1 (e_value=6e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:55314775-55316037 transcript_region:SL2.40ch08:55314775..55316037- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00030390g0005.1 protein AED:0.16 eAED:0.16 QI:88|1|0.5|1|1|1|2|0|305; (*GB) gi|113205356|gb|AAT66766.2| (e_value=0.0) Mitochondrial carrier protein [Solanum demissum];; (*SWP) sp|O95847|UCP4_HUMAN (e_value=4e-83) Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1;; (*TAIR) AT1G14140.1 (e_value=7e-146) | Symbols: | Mitochondrial substrate carrier family protein | chr1:4838131-4839602 REVERSE LENGTH=305;; (*ITAG) Solyc05g007730.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2204994-2207630 transcript_region:SL2.40ch05:2204994..2207630- go_terms:GO:0017077 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- Q6F2C9_SOLDE); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0017077 NbS00053791g0001.1 protein AED:0.20 eAED:0.20 QI:212|0.8|1|1|0.8|0.66|6|125|291; (*GB) gi|25989347|gb|AAL47479.1| (e_value=8e-121) cyclin D1 [Helianthus tuberosus];; (*SWP) sp|P42751|CCD11_ARATH (e_value=3e-99) Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3;; (*TAIR) AT1G70210.1 (e_value=2e-100) | Symbols: CYCD1;1, ATCYCD1;1 | CYCLIN D1;1 | chr1:26440015-26441980 FORWARD LENGTH=339;; (*ITAG) Solyc05g006050.2.1 (e_value=1e-166) genomic_reference:SL2.40ch05 gene_region:786643-789497 transcript_region:SL2.40ch05:786643..789497- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin D1 (AHRD V1 **** Q8GVE0_HELTU); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00014751g0004.1 protein AED:0.20 eAED:0.22 QI:0|0.77|0.6|1|1|1|10|0|1494; (*GB) gi|297737268|emb|CBI26469.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16680.1 (e_value=1e-104) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:5467534-5472956 REVERSE LENGTH=1311;; (*ITAG) Solyc03g097260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53001328-53011523 transcript_region:SL2.40ch03:53001328..53011523- go_terms:GO:0003677 functional_description:"Bromodomain adjacent to zinc finger domain protein 1A (AHRD V1 *-*- BAZ1A_HUMAN); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003677 NbS00049641g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0.5|2|0|221; (*GB) gi|357494187|ref|XP_003617382.1| (e_value=5e-73) NAC domain protein IPR003441 [Medicago truncatula];; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=1e-71) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=1e-72) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc07g045030.2.1 (e_value=1e-87) genomic_reference:SL2.40ch07 gene_region:55436220-55441033 transcript_region:SL2.40ch07:55436220..55441033+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00044359g0004.1 protein AED:0.22 eAED:0.24 QI:0|0.25|0.2|1|0.25|0.4|5|0|588; (*GB) gi|47824946|gb|AAT38720.1| (e_value=4e-99) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=3e-14) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=2e-15) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc07g052580.1.1 (e_value=8e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58385492-58387399 transcript_region:SL2.40ch07:58385492..58387399- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00050297g0001.1 protein AED:0.17 eAED:0.65 QI:0|0|0|1|0|0|3|0|188; (*GB) gi|323435163|ref|YP_004222381.1| (e_value=4e-13) hypothetical protein BevumaM_p148 [Beta vulgaris subsp. maritima];; (*TAIR) AT2G07681.1 (e_value=6e-13) | Symbols: | Cytochrome C assembly protein | chr2:3287596-3292330 FORWARD LENGTH=736; NbS00028006g0001.1 protein AED:0.06 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|527; (*ITAG) Solyc03g005640.1.1 (e_value=4e-124) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:457646-459016 transcript_region:SL2.40ch03:457646..459016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00010649g0005.1 protein AED:0.19 eAED:0.31 QI:0|0|0|1|1|1|2|0|93; (*ITAG) Solyc02g094000.1.1 (e_value=4e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49243310-49243735 transcript_region:SL2.40ch02:49243310..49243735+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00010649g0008.1 protein AED:0.17 eAED:0.21 QI:0|0.66|0.42|1|0.66|0.71|7|0|476; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=0.0) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=0.0) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=0.0) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00010649g0001.1 protein AED:0.40 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=3e-48) potassium channel [Nicotiana paniculata];; (*ITAG) Solyc01g104030.2.1 (e_value=1e-42) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00032663g0006.1 protein AED:0.23 eAED:0.23 QI:235|1|0.75|1|0.66|0.75|4|0|530; (*GB) gi|225463623|ref|XP_002273367.1| (e_value=0.0) PREDICTED: probable glycerol kinase isoform 1 [Vitis vinifera];; (*SWP) sp|Q63060|GLPK_RAT (e_value=7e-176) Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1;; (*TAIR) AT1G80460.1 (e_value=0.0) | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522;; (*ITAG) Solyc03g117490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60690878-60693820 transcript_region:SL2.40ch03:60690878..60693820+ go_terms:GO:0006072,GO:0005975 functional_description:"Glycerol kinase (AHRD V1 ***- Q6RUF8_SOYBN); contains Interpro domain(s) IPR005999 Glycerol kinase "; GO:0006072,GO:0005975 NbS00031984g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|255573718|ref|XP_002527780.1| (e_value=2e-74) 21 kDa protein precursor, putative [Ricinus communis];; (*SWP) sp|P17407|21KD_DAUCA (e_value=3e-38) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G01610.1 (e_value=1e-60) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr2:274124-274792 REVERSE LENGTH=222;; (*ITAG) Solyc10g076730.1.1 (e_value=9e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00031984g0008.1 protein AED:0.22 eAED:0.22 QI:135|1|1|1|1|1|6|541|164; (*GB) gi|225440807|ref|XP_002281866.1| (e_value=1e-100) PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1 [Vitis vinifera];; (*SWP) sp|Q9D0W5|PPIL1_MOUSE (e_value=5e-70) Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1;; (*TAIR) AT2G36130.1 (e_value=2e-96) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:15166863-15168259 FORWARD LENGTH=164;; (*ITAG) Solyc09g010190.2.1 (e_value=3e-108) genomic_reference:SL2.40ch09 gene_region:3581547-3586678 transcript_region:SL2.40ch09:3581547..3586678- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C6TF56_SOYBN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00010672g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.88|0.78|0.94|1|1|19|455|578; (*GB) gi|359485268|ref|XP_003633251.1| (e_value=0.0) PREDICTED: GTP-binding protein TypA/BipA homolog isoform 2 [Vitis vinifera];; (*SWP) sp|O25225|TYPA_HELPY (e_value=7e-150) GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=typA PE=3 SV=1;; (*TAIR) AT2G31060.2 (e_value=0.0) | Symbols: | elongation factor family protein | chr2:13213496-13218544 REVERSE LENGTH=667;; (*ITAG) Solyc07g053470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59231070-59250411 transcript_region:SL2.40ch07:59231070..59250411+ go_terms:GO:0005515,GO:0003746 functional_description:"GTP binding/translation elongation factor protein (AHRD V1 **** C1E924_9CHLO); contains Interpro domain(s) IPR006298 GTP-binding protein TypA "; GO:0005515,GO:0003746 NbS00010672g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|125572049|gb|EAZ13564.1| (e_value=2e-30) hypothetical protein OsJ_03479 [Oryza sativa Japonica Group];; (*SWP) sp|P57508|TYPA_BUCAI (e_value=7e-15) GTP-binding protein TypA/BipA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=typA PE=3 SV=1;; (*TAIR) AT2G31060.2 (e_value=2e-31) | Symbols: | elongation factor family protein | chr2:13213496-13218544 REVERSE LENGTH=667;; (*ITAG) Solyc07g053470.2.1 (e_value=3e-35) genomic_reference:SL2.40ch07 gene_region:59231070-59250411 transcript_region:SL2.40ch07:59231070..59250411+ go_terms:GO:0005515,GO:0003746 functional_description:"GTP binding/translation elongation factor protein (AHRD V1 **** C1E924_9CHLO); contains Interpro domain(s) IPR006298 GTP-binding protein TypA "; GO:0005515,GO:0003746 NbS00010672g0009.1 protein AED:0.34 eAED:0.44 QI:0|0|0|1|0.5|0.66|3|0|273; (*GB) gi|225443554|ref|XP_002277579.1| (e_value=1e-129) PREDICTED: ras-related protein RABA1f [Vitis vinifera];; (*SWP) sp|Q9FJH0|RAA1F_ARATH (e_value=2e-128) Ras-related protein RABA1f OS=Arabidopsis thaliana GN=RABA1F PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=1e-129) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc07g053480.2.1 (e_value=2e-136) genomic_reference:SL2.40ch07 gene_region:59251334-59254015 transcript_region:SL2.40ch07:59251334..59254015+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00059706g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.5|1|0.6|0.5|6|0|529; (*GB) gi|224067154|ref|XP_002302382.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQB9|CSLCC_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1;; (*TAIR) AT4G07960.1 (e_value=0.0) | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699;; (*ITAG) Solyc12g088240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62131260-62133954 transcript_region:SL2.40ch12:62131260..62133954+ functional_description:"Cellulose synthase-like C1-1 glycosyltransferase family 2 protein (AHRD V1 ***- D8RV47_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; NbS00059183g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.66|1|0|0|3|0|143; (*GB) gi|225424182|ref|XP_002284123.1| (e_value=8e-65) PREDICTED: uncharacterized protein LOC100254317 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=7e-49) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G71050.1 (e_value=1e-56) | Symbols: HIPP20 | Heavy metal transport/detoxification superfamily protein | chr1:26803322-26803946 REVERSE LENGTH=152;; (*ITAG) Solyc04g007630.1.1 (e_value=9e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1308734-1309582 transcript_region:SL2.40ch04:1308734..1309582+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00012265g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0.9|1|1|1|10|0|776; (*GB) gi|359491054|ref|XP_002279401.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera];; (*SWP) sp|Q9FGW9|GTE10_ARATH (e_value=9e-124) Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2;; (*TAIR) AT5G63320.1 (e_value=7e-125) | Symbols: NPX1 | nuclear protein X1 | chr5:25374413-25378783 REVERSE LENGTH=1061;; (*ITAG) Solyc03g111090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55799870-55806252 transcript_region:SL2.40ch03:55799870..55806252- go_terms:GO:0016564 functional_description:"Bromodomain factor (AHRD V1 *--- A7A1S4_YEAS7); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0016564 NbS00012265g0003.1 protein AED:0.53 eAED:0.53 QI:361|0.5|0.66|0.66|0.5|0.66|3|113|42 NbS00012265g0004.1 protein AED:0.75 eAED:0.75 QI:0|0.25|0.2|0.6|1|1|5|0|145; (*GB) gi|193290690|gb|ACF17653.1| (e_value=1e-58) putative 3-oxoacyl-(acyl-carrier protein) reductase [Capsicum annuum];; (*SWP) sp|P28643|FABG_CUPLA (e_value=2e-55) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1;; (*TAIR) AT1G24360.1 (e_value=4e-47) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc06g071910.2.1 (e_value=2e-59) genomic_reference:SL2.40ch06 gene_region:40687928-40693427 transcript_region:SL2.40ch06:40687928..40693427- go_terms:GO:0048038,GO:0070402,GO:0008753 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0048038,GO:0070402,GO:0008753 NbS00022719g0002.1 protein AED:0.09 eAED:0.09 QI:102|1|1|1|0.8|0.83|6|349|191; (*GB) gi|76160947|gb|ABA40437.1| (e_value=2e-131) 40S ribosomal protein S7-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZNS1|RS7_AVIMR (e_value=2e-116) 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=2e-115) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc06g069090.2.1 (e_value=1e-133) genomic_reference:SL2.40ch06 gene_region:39269885-39272377 transcript_region:SL2.40ch06:39269885..39272377- go_terms:GO:0005840 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0005840 NbS00001151g0010.1 protein AED:0.04 eAED:0.04 QI:158|1|1|1|1|1|7|634|439; (*GB) gi|297741911|emb|CBI33346.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q944R1|PLY15_ARATH (e_value=0.0) Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1;; (*TAIR) AT4G13710.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:7962550-7966012 FORWARD LENGTH=470;; (*ITAG) Solyc09g061890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56216130-56219823 transcript_region:SL2.40ch09:56216130..56219823+ go_terms:GO:0016829 functional_description:"Pectate lyase 1-27 (AHRD V1 **** B9TU35_9ROSI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00001151g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0|0.33|3|0|635; (*GB) gi|225464208|ref|XP_002264706.1| (e_value=0.0) PREDICTED: putative kinase-like protein TMKL1-like [Vitis vinifera];; (*SWP) sp|P33543|TMKL1_ARATH (e_value=0.0) Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1;; (*TAIR) AT3G24660.1 (e_value=0.0) | Symbols: TMKL1 | transmembrane kinase-like 1 | chr3:9003641-9005751 FORWARD LENGTH=674;; (*ITAG) Solyc09g061930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56299247-56302802 transcript_region:SL2.40ch09:56299247..56302802- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00026891g0006.1 protein AED:0.05 eAED:0.11 QI:6|0.5|0.33|1|0|0|3|292|191; (*GB) gi|225430582|ref|XP_002264384.1| (e_value=3e-34) PREDICTED: cadmium-induced protein AS8 [Vitis vinifera];; (*SWP) sp|P42735|CDI8_ARATH (e_value=7e-25) Cadmium-induced protein AS8 OS=Arabidopsis thaliana GN=At4g19070 PE=2 SV=1;; (*TAIR) AT4G19070.1 (e_value=5e-26) | Symbols: | Putative membrane lipoprotein | chr4:10446770-10448079 REVERSE LENGTH=171;; (*ITAG) Solyc12g096090.1.1 (e_value=2e-77) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63495237-63498391 transcript_region:SL2.40ch12:63495237..63498391- functional_description:"Cadmium-induced protein AS8 (AHRD V1 ***- CDI8_ARATH)"; NbS00021305g0003.1 protein AED:0.32 eAED:0.34 QI:0|1|0.66|1|1|1|6|0|444; (*GB) gi|225451019|ref|XP_002281041.1| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase ALE2 [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=2e-89) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT1G54820.1 (e_value=6e-154) | Symbols: | Protein kinase superfamily protein | chr1:20447370-20450761 FORWARD LENGTH=458;; (*ITAG) Solyc01g098740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80937377-80940546 transcript_region:SL2.40ch01:80937377..80940546- go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012620g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0.5|2|426|242; (*GB) gi|225462775|ref|XP_002263910.1| (e_value=2e-73) PREDICTED: ankyrin repeat domain-containing protein 13C [Vitis vinifera];; (*TAIR) AT1G04780.1 (e_value=6e-49) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=6e-86) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00012620g0010.1 protein AED:0.30 eAED:0.30 QI:26|0|0|0.5|1|0.5|2|0|305; (*GB) gi|255554182|ref|XP_002518131.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q5F259|AN13B_MOUSE (e_value=2e-30) Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1;; (*TAIR) AT1G04780.1 (e_value=2e-170) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00012620g0006.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|1|1|4|0|163; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00004761g0001.1 protein AED:0.34 eAED:0.99 QI:30|0|0|1|0|0|2|123|25 NbS00001294g0005.1 protein AED:0.13 eAED:0.13 QI:126|1|0.83|1|1|1|6|0|551; (*GB) gi|254762128|gb|ACT80136.1| (e_value=0.0) transcription factor WRKY [Capsicum annuum];; (*SWP) sp|Q9C519|WRKY6_ARATH (e_value=1e-136) WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1;; (*TAIR) AT1G62300.1 (e_value=1e-137) | Symbols: WRKY6, ATWRKY6 | WRKY family transcription factor | chr1:23016887-23019155 REVERSE LENGTH=553;; (*ITAG) Solyc02g080890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39569094-39571649 transcript_region:SL2.40ch02:39569094..39571649- go_terms:GO:0005515,GO:0010843 functional_description:"Transcription factor WRKY (AHRD V1 ***- C7E5X8_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0010843 NbS00048261g0010.1 protein AED:0.25 eAED:0.25 QI:59|0.78|0.8|1|0.57|0.73|15|275|605; (*GB) gi|225445585|ref|XP_002285365.1| (e_value=0.0) PREDICTED: GTPase-activating protein gyp7-like [Vitis vinifera];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=4e-53) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT5G52580.1 (e_value=0.0) | Symbols: | RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=673;; (*ITAG) Solyc12g009610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2864130-2875362 transcript_region:SL2.40ch12:2864130..2875362- go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00048261g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0.5|2|0|613; (*GB) gi|350535054|ref|NP_001234429.1| (e_value=3e-37) dicyanin precursor [Solanum lycopersicum];; (*SWP) sp|Q41001|BCP_PEA (e_value=8e-19) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G31050.1 (e_value=3e-21) | Symbols: | Cupredoxin superfamily protein | chr2:13212150-13212752 FORWARD LENGTH=200;; (*ITAG) Solyc07g008120.2.1 (e_value=6e-43) genomic_reference:SL2.40ch07 gene_region:2836185-2837343 transcript_region:SL2.40ch07:2836185..2837343+ go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00020417g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|22128591|gb|AAM52341.1| (e_value=6e-56) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=9e-33) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=7e-34) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007280.2.1 (e_value=5e-62) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00020417g0007.1 protein AED:0.11 eAED:0.11 QI:240|1|1|1|1|1|2|243|66 NbS00020417g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.4|0.16|0.83|0.2|0.33|6|0|332; (*GB) gi|147852758|emb|CAN81676.1| (e_value=1e-44) hypothetical protein VITISV_040772 [Vitis vinifera];; (*SWP) sp|Q9LNG5|PPP7L_ARATH (e_value=3e-40) Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1;; (*TAIR) AT1G48120.1 (e_value=2e-41) | Symbols: | hydrolases;protein serine/threonine phosphatases | chr1:17774238-17779624 REVERSE LENGTH=1340;; (*ITAG) Solyc12g006100.1.1 (e_value=6e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:666521-670776 transcript_region:SL2.40ch12:666521..670776+ go_terms:GO:0016787 functional_description:"Serine/threonine-protein phosphatase 4 catalytic subunit (AHRD V1 *-*- PP4C_KLULA); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; GO:0016787 NbS00006682g0001.1 protein AED:0.26 eAED:0.26 QI:115|0|0.25|0.5|1|1|4|231|83 NbS00006682g0104.1 protein AED:0.01 eAED:0.01 QI:103|0.66|0.5|1|1|1|4|0|193 NbS00006682g0106.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|98 NbC24855640g0001.1 protein AED:0.21 eAED:0.30 QI:0|0|0|1|0|0|2|0|132 NbS00022028g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|3|133|323; (*GB) gi|224064017|ref|XP_002301350.1| (e_value=4e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=6e-65) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT3G61250.1 (e_value=5e-123) | Symbols: AtMYB17, MYB17 | myb domain protein 17 | chr3:22671306-22672551 FORWARD LENGTH=299;; (*ITAG) Solyc01g094360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77639294-77641524 transcript_region:SL2.40ch01:77639294..77641524+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00022028g0006.1 protein AED:0.27 eAED:0.27 QI:276|1|1|1|1|1|5|1692|175; (*GB) gi|350536269|ref|NP_001234238.1| (e_value=3e-55) remorin 2 [Solanum lycopersicum];; (*SWP) sp|P93788|REMO_SOLTU (e_value=1e-41) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=8e-44) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc01g094370.2.1 (e_value=5e-58) genomic_reference:SL2.40ch01 gene_region:77641584-77645425 transcript_region:SL2.40ch01:77641584..77645425- go_terms:GO:0003677 functional_description:"Remorin 2 (AHRD V1 ***- Q9XEX9_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00021698g0014.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.66|1|1|1|6|0|648; (*GB) gi|225442172|ref|XP_002275795.1| (e_value=0.0) PREDICTED: phospholipid:diacylglycerol acyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=0.0) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=0.0) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc06g062870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36060999-36064645 transcript_region:SL2.40ch06:36060999..36064645- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** C0NGK9_AJECG); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00021698g0011.1 protein AED:0.21 eAED:0.21 QI:58|0.92|0.93|1|0.85|0.86|15|765|638; (*GB) gi|124484391|dbj|BAF46306.1| (e_value=0.0) ataxin-2 related protein [Ipomoea nil];; (*SWP) sp|Q55DE7|ATX2_DICDI (e_value=6e-33) Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1;; (*TAIR) AT3G14010.3 (e_value=3e-125) | Symbols: CID4 | CTC-interacting domain 4 | chr3:4637164-4640691 FORWARD LENGTH=595;; (*ITAG) Solyc06g062860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36045922-36059362 transcript_region:SL2.40ch06:36045922..36059362- functional_description:"Ataxin-2 (AHRD V1 *--- D3BPE8_POLPA); contains Interpro domain(s) IPR009604 LsmAD domain "; NbS00021698g0008.1 protein AED:0.69 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|62 NbS00033078g0001.1 protein AED:0.05 eAED:0.05 QI:902|0|0.5|1|0|0.5|2|1453|213; (*GB) gi|15144509|gb|AAK84476.1| (e_value=4e-102) unknown [Solanum lycopersicum];; (*TAIR) AT2G22560.1 (e_value=1e-51) | Symbols: | Kinase interacting (KIP1-like) family protein | chr2:9585892-9588838 FORWARD LENGTH=947;; (*ITAG) Solyc11g010630.2.1 (e_value=6e-105) genomic_reference:SL2.40ch11 gene_region:3691539-3704230 transcript_region:SL2.40ch11:3691539..3704230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033078g0012.1 protein AED:0.18 eAED:0.20 QI:0|0.75|0.4|1|0.75|0.8|5|0|296; (*GB) gi|15144507|gb|AAK84474.1| (e_value=1e-164) suppressor-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LSM5|SGT1_ARATH (e_value=1e-106) Protein SGT1 homolog At5g65490 OS=Arabidopsis thaliana GN=At5g65490 PE=2 SV=1;; (*TAIR) AT5G65490.1 (e_value=1e-107) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26178003-26180309 REVERSE LENGTH=643;; (*ITAG) Solyc11g010660.1.1 (e_value=2e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3707451-3711230 transcript_region:SL2.40ch11:3707451..3711230- functional_description:"SGT1 protein (AHRD V1 ***- D3B137_POLPA); contains Interpro domain(s) IPR010770 SGT1 "; NbS00033078g0011.1 protein AED:0.41 eAED:0.41 QI:2|1|0.5|1|0.66|0.5|4|0|206; (*GB) gi|15144508|gb|AAK84475.1| (e_value=3e-114) unknown [Solanum lycopersicum];; (*TAIR) AT2G22570.1 (e_value=7e-83) | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9589604-9590846 REVERSE LENGTH=244;; (*ITAG) Solyc11g010650.2.1 (e_value=1e-116) genomic_reference:SL2.40ch11 gene_region:3704467-3706636 transcript_region:SL2.40ch11:3704467..3706636- go_terms:GO:0008936 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00025830g0012.1 protein AED:0.09 eAED:0.09 QI:202|0.71|0.5|1|0.57|0.37|8|19|966; (*GB) gi|359496284|ref|XP_002271910.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242526 [Vitis vinifera];; (*TAIR) AT1G70630.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:26632118-26633991 FORWARD LENGTH=537;; (*ITAG) Solyc05g013500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6718426-6723728 transcript_region:SL2.40ch05:6718426..6723728+ go_terms:GO:0005783 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTF3_SELML); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00025830g0011.1 protein AED:0.21 eAED:0.22 QI:0|0.90|0.75|1|0.81|0.91|12|947|994; (*GB) gi|359496286|ref|XP_002271978.2| (e_value=2e-122) PREDICTED: uncharacterized protein LOC100259633 [Vitis vinifera];; (*TAIR) AT1G70620.2 (e_value=6e-25) | Symbols: | cyclin-related | chr1:26626634-26630307 FORWARD LENGTH=884;; (*ITAG) Solyc05g013490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6701173-6716534 transcript_region:SL2.40ch05:6701173..6716534+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025830g0007.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|3|0|587; (*GB) gi|47571341|gb|AAT35816.1| (e_value=0.0) chloroplast phosphate transporter precursor [Solanum tuberosum];; (*SWP) sp|Q38954|PHT21_ARATH (e_value=0.0) Inorganic phosphate transporter 2-1, chloroplastic OS=Arabidopsis thaliana GN=PHT2-1 PE=1 SV=1;; (*TAIR) AT3G26570.2 (e_value=0.0) | Symbols: PHT2;1, ORF02 | phosphate transporter 2;1 | chr3:9756416-9758413 FORWARD LENGTH=587;; (*ITAG) Solyc05g013510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6724684-6728136 transcript_region:SL2.40ch05:6724684..6728136- go_terms:GO:0016020 functional_description:"Phosphate transporter 2-1 (AHRD V1 ***- Q7YME0_WHEAT); contains Interpro domain(s) IPR001204 Phosphate transporter "; GO:0016020 NbS00042739g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|376; (*GB) gi|54261825|gb|AAV31175.1| (e_value=1e-91) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=2e-22) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc04g015220.2.1 (e_value=8e-81) genomic_reference:SL2.40ch04 gene_region:5406762-5409516 transcript_region:SL2.40ch04:5406762..5409516- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00042739g0001.1 protein AED:0.29 eAED:0.38 QI:74|1|0.5|1|0|0|2|0|415; (*GB) gi|190607537|gb|ACE79431.1| (e_value=1e-146) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=3e-48) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=3e-30) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=1e-92) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00042739g0002.1 protein AED:0.44 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|54261825|gb|AAV31175.1| (e_value=2e-33) Putative disease resistance protein, identical [Solanum tuberosum];; (*SWP) sp|Q8W3K0|DRL9_ARATH (e_value=4e-14) Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1;; (*TAIR) AT1G58602.2 (e_value=3e-15) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr1:21760167-21763765 FORWARD LENGTH=1138;; (*ITAG) Solyc08g005500.2.1 (e_value=4e-41) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00037849g0003.1 protein AED:0.23 eAED:0.23 QI:127|1|0.6|1|1|1|5|62|112; (*GB) gi|224104913|ref|XP_002313617.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|O49884|RL30_LUPLU (e_value=2e-74) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=4e-70) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc11g071490.1.1 (e_value=9e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52029448-52031919 transcript_region:SL2.40ch11:52029448..52031919+ go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00017292g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.75|1|0.75|4|0|106; (*GB) gi|297845926|ref|XP_002890844.1| (e_value=8e-30) hypothetical protein ARALYDRAFT_890536 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G29990.1 (e_value=5e-31) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=8e-35) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631,GO:0051087 NbS00027771g0005.1 protein AED:0.24 eAED:0.24 QI:555|1|1|1|0.87|0.77|9|402|215; (*GB) gi|225455380|ref|XP_002277839.1| (e_value=4e-135) PREDICTED: calcineurin B-like protein 04 [Vitis vinifera];; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=4e-112) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=3e-111) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc06g051970.2.1 (e_value=2e-149) genomic_reference:SL2.40ch06 gene_region:32132164-32135700 transcript_region:SL2.40ch06:32132164..32135700- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00040515g0001.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.57|1|1|7|0|584; (*GB) gi|255558480|ref|XP_002520265.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|O49287|PP127_ARATH (e_value=3e-157) Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3 SV=1;; (*TAIR) AT1G77010.1 (e_value=2e-158) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28942710-28944797 FORWARD LENGTH=695;; (*ITAG) Solyc04g074160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57743013-57745070 transcript_region:SL2.40ch04:57743013..57745070+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTZ4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00040515g0004.1 protein AED:0.00 eAED:0.00 QI:403|1|1|1|0|0.5|2|189|112; (*GB) gi|225459302|ref|XP_002284147.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100266070 [Vitis vinifera];; (*TAIR) AT1G34640.1 (e_value=4e-31) | Symbols: | peptidases | chr1:12687706-12688427 REVERSE LENGTH=110;; (*ITAG) Solyc12g057030.1.1 (e_value=1e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:48459072-48460366 transcript_region:SL2.40ch12:48459072..48460366- functional_description:"Unknown Protein (AHRD V1)"; NbS00013984g0021.1 protein AED:0.00 eAED:0.00 QI:287|1|1|1|1|1|3|370|333; (*GB) gi|116323|sp|P29059.1|CHI3_TOBAC (e_value=0.0) RecName: Full=Endochitinase 3; Flags: Precursor;; (*SWP) sp|P29059|CHI3_TOBAC (e_value=0.0) Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1;; (*TAIR) AT3G12500.1 (e_value=7e-146) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g055800.1.1 (e_value=6e-173) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52885305-52886445 transcript_region:SL2.40ch10:52885305..52886445- go_terms:GO:0005975,GO:0008061,GO:0016998 functional_description:"Chitinase (AHRD V1 ***- B9VRK7_CAPAN); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0005975,GO:0008061,GO:0016998 NbS00013984g0020.1 protein AED:0.34 eAED:0.34 QI:235|1|1|1|1|1|9|600|509; (*GB) gi|224080762|ref|XP_002306223.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT4G35230.1 (e_value=0.0) | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755325-16758041 REVERSE LENGTH=512;; (*ITAG) Solyc04g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63577253-63583094 transcript_region:SL2.40ch04:63577253..63583094- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00013984g0017.1 protein AED:0.63 eAED:0.84 QI:0|0|0|0.66|1|1|3|0|69 NbS00013984g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|549; (*GB) gi|328497229|dbj|BAK18781.1| (e_value=0.0) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P93479|RETO_PAPSO (e_value=1e-146) Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1;; (*TAIR) AT4G20860.1 (e_value=3e-128) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc04g080400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00013984g0022.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|325; (*GB) gi|225459906|ref|XP_002263733.1| (e_value=0.0) PREDICTED: putative fructokinase-5-like [Vitis vinifera];; (*SWP) sp|O82616|SCRK5_ARATH (e_value=0.0) Putative fructokinase-5 OS=Arabidopsis thaliana GN=At4g10260 PE=2 SV=1;; (*TAIR) AT4G10260.1 (e_value=0.0) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:6371486-6372770 REVERSE LENGTH=324;; (*ITAG) Solyc11g042850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34310825-34313337 transcript_region:SL2.40ch11:34310825..34313337- functional_description:"5-dehydro-2-deoxygluconokinase (AHRD V1 **-- IOLC_GEOTN); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00013984g0023.1 protein AED:0.13 eAED:0.13 QI:230|1|1|1|1|1|3|358|135; (*GB) gi|224127838|ref|XP_002329190.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g009030.1.1 (e_value=2e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:3165015-3165413 transcript_region:SL2.40ch11:3165015..3165413+ functional_description:"Ribosomal protein L37 (AHRD V1 *-*- B6T670_MAIZE)"; NbS00013984g0025.1 protein AED:0.21 eAED:0.22 QI:0|1|0.66|1|0.5|1|3|0|318; (*GB) gi|225428243|ref|XP_002279423.1| (e_value=6e-97) PREDICTED: uncharacterized protein LOC100258993 [Vitis vinifera];; (*TAIR) AT2G41990.1 (e_value=2e-63) | Symbols: | CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT4G35170.1); Has 172 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17527396-17528527 FORWARD LENGTH=297;; (*ITAG) Solyc11g042880.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34353128-34353894 transcript_region:SL2.40ch11:34353128..34353894- functional_description:"Harpin-induced protein (AHRD V1 **-- B6TDG9_MAIZE)"; NbS00013984g0031.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0.25|4|0|169; (*GB) gi|183238956|gb|ACC61048.1| (e_value=1e-49) expansin-like 1 protein [Ipomoea batatas];; (*SWP) sp|Q9SVE5|EXLA2_ARATH (e_value=3e-34) Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1;; (*TAIR) AT4G38400.1 (e_value=2e-35) | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 | expansin-like A2 | chr4:17978675-17979665 REVERSE LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00013984g0030.1 protein AED:0.57 eAED:0.57 QI:236|0|0.5|0.5|0|0.5|2|0|132 NbS00021324g0005.1 protein AED:0.00 eAED:0.00 QI:236|0.5|0.66|1|1|1|3|0|429; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=0.0) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92980|APR3_ARATH (e_value=0.0) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2;; (*TAIR) AT4G21990.1 (e_value=0.0) | Symbols: APR3, PRH-26, PRH26, ATAPR3 | APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458;; (*ITAG) Solyc02g080640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00021324g0006.1 protein AED:0.15 eAED:0.17 QI:184|0.33|0.25|1|0.33|0.25|4|0|457; (*GB) gi|359483356|ref|XP_003632942.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 1-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G11820.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:3991144-3993327 REVERSE LENGTH=511;; (*ITAG) Solyc02g080660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39414865-39418229 transcript_region:SL2.40ch02:39414865..39418229+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6UBU1_MAIZE); contains Interpro domain(s) IPR012946 X8 "; GO:0005975 NbS00021792g0006.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0.25|0.75|0.66|0.5|4|708|146; (*GB) gi|359478210|ref|XP_002278183.2| (e_value=8e-50) PREDICTED: uncharacterized protein LOC100264609 [Vitis vinifera];; (*TAIR) AT3G59800.1 (e_value=3e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43795.2); Has 15361 Blast hits to 8061 proteins in 537 species: Archae - 2; Bacteria - 622; Metazoa - 7561; Fungi - 1246; Plants - 920; Viruses - 49; Other Eukaryotes - 4961 (source: NCBI BLink). | chr3:22094597-22096174 REVERSE LENGTH=186;; (*ITAG) Solyc12g019470.1.1 (e_value=4e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10403247-10411464 transcript_region:SL2.40ch12:10403247..10411464- functional_description:"CBF1 interacting corepressor (AHRD V1 *--- B6UDK7_MAIZE)"; NbS00017872g0001.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|3|0|612; (*GB) gi|224134897|ref|XP_002321932.1| (e_value=1e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT5G37010.1 (e_value=1e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259 proteins in 486 species: Archae - 7; Bacteria - 485; Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50; Other Eukaryotes - 1741 (source: NCBI BLink). | chr5:14620853-14622879 REVERSE LENGTH=637;; (*ITAG) Solyc02g036460.2.1 (e_value=3e-133) genomic_reference:SL2.40ch02 gene_region:21511925-21514050 transcript_region:SL2.40ch02:21511925..21514050+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017872g0006.1 protein AED:0.13 eAED:0.16 QI:0|0.83|0.57|1|1|1|7|0|473; (*GB) gi|225466171|ref|XP_002263956.1| (e_value=4e-147) PREDICTED: uncharacterized transporter sll0355 [Vitis vinifera];; (*SWP) sp|P74436|Y355_SYNY3 (e_value=2e-68) Uncharacterized transporter sll0355 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0355 PE=3 SV=1;; (*TAIR) AT3G02690.1 (e_value=3e-143) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:579627-581448 FORWARD LENGTH=417;; (*ITAG) Solyc02g036470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21514105-21519145 transcript_region:SL2.40ch02:21514105..21519145- go_terms:GO:0016020 functional_description:"Drug/metabolite transporter (AHRD V1 ***- B4TLZ1_SALSV); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00021336g0021.1 protein AED:0.00 eAED:0.00 QI:795|1|1|1|0|0|2|370|200; (*GB) gi|255567473|ref|XP_002524716.1| (e_value=9e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27310.1 (e_value=1e-28) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc02g079430.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:38574418-38575502 transcript_region:SL2.40ch02:38574418..38575502- go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP04_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00021336g0004.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|225447669|ref|XP_002275606.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100264828 [Vitis vinifera];; (*ITAG) Solyc07g063640.1.1 (e_value=1e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63280045-63280344 transcript_region:SL2.40ch07:63280045..63280344- functional_description:"Wound induced protein (AHRD V1 ***- B6SKC8_MAIZE)"; NbS00021336g0014.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|0.14|0.12|8|186|714; (*GB) gi|359493899|ref|XP_003634689.1| (e_value=0.0) PREDICTED: cyclic nucleotide-gated ion channel 4-like [Vitis vinifera];; (*SWP) sp|Q94AS9|CNGC4_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2;; (*TAIR) AT5G54250.2 (e_value=0.0) | Symbols: ATCNGC4, CNGC4, HLM1, DND2 | cyclic nucleotide-gated cation channel 4 | chr5:22025684-22029971 REVERSE LENGTH=694;; (*ITAG) Solyc12g005400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:236128-242060 transcript_region:SL2.40ch12:236128..242060- functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00021336g0025.1 protein AED:0.09 eAED:0.09 QI:308|1|1|1|0.6|0.66|6|205|470; (*GB) gi|302143083|emb|CBI20378.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g006810.2.1 (e_value=4e-139) genomic_reference:SL2.40ch10 gene_region:1248883-1253524 transcript_region:SL2.40ch10:1248883..1253524- functional_description:"Cyclic nucleotide-gated channel (AHRD V1 ***- B9I014_POPTR)"; NbS00021336g0033.1 protein AED:0.17 eAED:0.17 QI:496|0.77|0.82|1|0.72|0.82|23|0|1043; (*GB) gi|116047951|gb|ABJ53201.1| (e_value=0.0) myosin VIII-2 [Nicotiana benthamiana];; (*SWP) sp|P08799|MYS2_DICDI (e_value=1e-161) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT5G54280.2 (e_value=0.0) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220;; (*ITAG) Solyc10g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1255061-1265706 transcript_region:SL2.40ch10:1255061..1265706- go_terms:GO:0042803 functional_description:"Myosin (AHRD V1 ***- Q9SNF0_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00021336g0029.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|4|1171|464; (*GB) gi|297603504|ref|NP_001054142.2| (e_value=0.0) Os04g0660200 [Oryza sativa Japonica Group];; (*SWP) sp|Q55G83|ABKC_DICDI (e_value=2e-69) Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1;; (*TAIR) AT1G11390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc10g006790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1231572-1237111 transcript_region:SL2.40ch10:1231572..1237111+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--- ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00021336g0028.1 protein AED:0.20 eAED:0.25 QI:219|0|0.25|0.75|0|0.25|4|0|290; (*GB) gi|343172028|gb|AEL98718.1| (e_value=6e-98) adenine nucleotide alpha hydrolases-like protein, partial [Silene latifolia];; (*TAIR) AT1G11360.4 (e_value=5e-95) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc10g006760.2.1 (e_value=2e-137) genomic_reference:SL2.40ch10 gene_region:1212643-1214025 transcript_region:SL2.40ch10:1212643..1214025- go_terms:GO:0006950 functional_description:"Universal stress protein (Usp) (AHRD V1 *--- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00021336g0030.1 protein AED:0.44 eAED:0.57 QI:15|0|0.25|1|0|0|4|0|193; (*GB) gi|225469916|ref|XP_002269141.1| (e_value=6e-20) PREDICTED: uncharacterized aarF domain-containing protein kinase 2-like [Vitis vinifera];; (*TAIR) AT1G11390.1 (e_value=6e-14) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc10g006790.2.1 (e_value=4e-71) genomic_reference:SL2.40ch10 gene_region:1231572-1237111 transcript_region:SL2.40ch10:1231572..1237111+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--- ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00025856g0002.1 protein AED:0.28 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|184; (*GB) gi|225454702|ref|XP_002271171.1| (e_value=1e-58) PREDICTED: putative gamma-glutamylcyclotransferase At3g02910-like [Vitis vinifera];; (*SWP) sp|Q9M8T3|Y2910_ARATH (e_value=1e-51) Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2;; (*TAIR) AT3G02910.1 (e_value=1e-52) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr3:649986-650549 FORWARD LENGTH=187;; (*ITAG) Solyc04g056330.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53219835-53220350 transcript_region:SL2.40ch04:53219835..53220350- go_terms:GO:0008307,GO:0003839 functional_description:"Protein containing AIG2-like domain (AHRD V1 *-*- D9PJU0_9ZZZZ); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like "; GO:0008307,GO:0003839 NbS00059370g0013.1 protein AED:0.16 eAED:0.16 QI:259|0.72|0.75|1|0.63|0.66|12|442|321; (*GB) gi|225426048|ref|XP_002274812.1| (e_value=3e-158) PREDICTED: probable beta-1,3-galactosyltransferase 11-like [Vitis vinifera];; (*SWP) sp|Q94F27|B3GTB_ARATH (e_value=5e-143) Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1;; (*TAIR) AT5G53340.1 (e_value=3e-144) | Symbols: | Galactosyltransferase family protein | chr5:21641045-21643195 REVERSE LENGTH=338;; (*ITAG) Solyc08g081920.2.1 (e_value=2e-142) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00059370g0014.1 protein AED:0.27 eAED:0.28 QI:0|0.75|0.6|1|1|1|5|0|219; (*GB) gi|225462713|ref|XP_002267522.1| (e_value=3e-64) PREDICTED: uncharacterized protein LOC100260370 [Vitis vinifera];; (*TAIR) AT5G53330.1 (e_value=1e-52) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr5:21639236-21640716 FORWARD LENGTH=221;; (*ITAG) Solyc03g007520.2.1 (e_value=1e-100) genomic_reference:SL2.40ch03 gene_region:2089415-2095197 transcript_region:SL2.40ch03:2089415..2095197- functional_description:"Proline-rich cell wall protein-like (AHRD V1 ***- Q8LG11_ARATH); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00059370g0009.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0|2|141|70 NbS00059370g0012.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.8|0.25|0|5|0|286; (*GB) gi|255545082|ref|XP_002513602.1| (e_value=4e-43) protein dimerization, putative [Ricinus communis];; (*TAIR) AT1G79740.1 (e_value=2e-40) | Symbols: | hAT transposon superfamily | chr1:30004367-30006715 REVERSE LENGTH=651;; (*ITAG) Solyc03g007510.2.1 (e_value=1e-41) genomic_reference:SL2.40ch03 gene_region:2083331-2089256 transcript_region:SL2.40ch03:2083331..2089256+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00039402g0005.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|66; (*ITAG) Solyc06g053990.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33355564-33355764 transcript_region:SL2.40ch06:33355564..33355764+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039402g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.77|0.7|1|0.88|0.8|10|62|886; (*GB) gi|302143311|emb|CBI21872.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G47300.2 (e_value=0.0) | Symbols: | ribonuclease Ps | chr2:19418733-19422076 FORWARD LENGTH=826;; (*ITAG) Solyc11g007800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2031760-2038024 transcript_region:SL2.40ch11:2031760..2038024- go_terms:GO:0006396,GO:0001682 functional_description:"Ribonuclease P/MRP protein subunit (AHRD V1 *--- A8NQR7_COPC7); contains Interpro domain(s) IPR009723 Ribonuclease P/MRP, POP1 "; GO:0006396,GO:0001682 NbS00039402g0015.1 protein AED:0.04 eAED:0.04 QI:162|1|1|1|0.5|0.6|5|414|152; (*GB) gi|225465821|ref|XP_002263648.1| (e_value=8e-55) PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis vinifera];; (*TAIR) AT5G62950.3 (e_value=6e-47) | Symbols: | RNA polymerase II, Rpb4, core protein | chr5:25262355-25263033 REVERSE LENGTH=139;; (*ITAG) Solyc11g007810.1.1 (e_value=6e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2040335-2041393 transcript_region:SL2.40ch11:2040335..2041393+ functional_description:"Calcitonin peptide-receptor component protein (AHRD V1 *--- B6T4L2_MAIZE); contains Interpro domain(s) IPR019000 RNA polymerase III, subunit C17 "; NbS00039402g0016.1 protein AED:0.21 eAED:0.23 QI:0|0|0.33|1|0.5|1|3|0|315; (*GB) gi|162568914|gb|ABY19383.1| (e_value=0.0) putative chlorophyllase [Nicotiana tabacum];; (*SWP) sp|Q9M7I7|CLH2_ARATH (e_value=1e-124) Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1;; (*TAIR) AT5G43860.1 (e_value=1e-125) | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17630492-17632184 FORWARD LENGTH=318;; (*ITAG) Solyc06g053980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33352567-33354119 transcript_region:SL2.40ch06:33352567..33354119- go_terms:GO:0047746 functional_description:"Chlorophyllase 2 (AHRD V1 **** Q8GTM3_BRAOL); contains Interpro domain(s) IPR010821 Chlorophyllase "; GO:0047746 NbS00037744g0001.1 protein AED:0.67 eAED:0.76 QI:0|0|0|0.5|1|1|4|0|92; (*GB) gi|116781012|gb|ABK21925.1| (e_value=7e-41) unknown [Picea sitchensis];; (*SWP) sp|O64818|Y2309_ARATH (e_value=3e-38) Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1;; (*TAIR) AT2G23090.1 (e_value=2e-39) | Symbols: | Uncharacterised protein family SERF | chr2:9829657-9830274 REVERSE LENGTH=78;; (*ITAG) Solyc04g078070.2.1 (e_value=6e-47) genomic_reference:SL2.40ch04 gene_region:60508246-60511703 transcript_region:SL2.40ch04:60508246..60511703- functional_description:"Expressed protein having alternate splicing products (AHRD V1 *--- Q75KB8_ORYSJ); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 "; NbS00028904g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.83|0.83|1|1|6|376|142; (*GB) gi|225463552|ref|XP_002267156.1| (e_value=7e-75) PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera];; (*SWP) sp|Q8W1P0|CSN6B_ARATH (e_value=7e-65) COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2;; (*TAIR) AT4G26430.1 (e_value=5e-66) | Symbols: CSN6B | COP9 signalosome subunit 6B | chr4:13355229-13357326 FORWARD LENGTH=317;; (*ITAG) Solyc10g005660.2.1 (e_value=3e-75) genomic_reference:SL2.40ch10 gene_region:536061-541079 transcript_region:SL2.40ch10:536061..541079+ go_terms:GO:0005515 functional_description:"COP9 signalosome subunit 6 (AHRD V1 ***- Q2A0N7_ORYSA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00028904g0007.1 protein AED:0.09 eAED:0.09 QI:188|1|1|1|1|1|4|279|610; (*GB) gi|350540100|ref|NP_001234642.1| (e_value=0.0) uncharacterized protein LOC778198 [Solanum lycopersicum];; (*SWP) sp|Q9ZWC6|ATB_ARATH (e_value=3e-162) F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1;; (*TAIR) AT1G55590.1 (e_value=2e-163) | Symbols: | RNI-like superfamily protein | chr1:20769476-20771756 REVERSE LENGTH=607;; (*ITAG) Solyc07g066240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64950107-64953735 transcript_region:SL2.40ch07:64950107..64953735+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00005862g0018.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|1|0.66|0.5|4|0|299; (*GB) gi|255549220|ref|XP_002515664.1| (e_value=8e-142) chitinase, putative [Ricinus communis];; (*SWP) sp|Q9MA41|CTL1_ARATH (e_value=3e-132) Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1;; (*TAIR) AT1G05850.1 (e_value=2e-133) | Symbols: POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1 | Chitinase family protein | chr1:1766833-1768117 REVERSE LENGTH=321;; (*ITAG) Solyc09g098540.2.1 (e_value=3e-177) genomic_reference:SL2.40ch09 gene_region:67611276-67612904 transcript_region:SL2.40ch09:67611276..67612904- go_terms:GO:0005975,GO:0016998 functional_description:"Chitinase-like protein (AHRD V1 ***- Q6JX03_GOSHI); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0005975,GO:0016998 NbS00005862g0004.1 protein AED:0.31 eAED:0.31 QI:469|0.92|1|1|0.85|0.73|15|463|385; (*GB) gi|359478080|ref|XP_003632066.1| (e_value=0.0) PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera];; (*SWP) sp|Q9C5H6|CSTR3_ARATH (e_value=0.0) CMP-sialic acid transporter 3 OS=Arabidopsis thaliana GN=UTR6 PE=2 SV=1;; (*TAIR) AT3G59360.2 (e_value=0.0) | Symbols: UTR6, ATUTR6 | UDP-galactose transporter 6 | chr3:21935826-21939642 REVERSE LENGTH=405;; (*ITAG) Solyc09g098520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67591633-67604989 transcript_region:SL2.40ch09:67591633..67604989+ go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 *-** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00005862g0019.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0.14|1|0.5|0.71|7|249|436; (*GB) gi|359478068|ref|XP_003632065.1| (e_value=5e-74) PREDICTED: uncharacterized protein LOC100854590 [Vitis vinifera];; (*TAIR) AT2G43235.1 (e_value=1e-68) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17968910-17970822 REVERSE LENGTH=437;; (*ITAG) Solyc09g098530.2.1 (e_value=3e-175) genomic_reference:SL2.40ch09 gene_region:67604986-67611760 transcript_region:SL2.40ch09:67604986..67611760+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006495g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0.5|1|0|0|2|23|69 NbS00050528g0003.1 protein AED:0.00 eAED:0.00 QI:21|1|1|1|1|1|3|73|72; (*GB) gi|224098479|ref|XP_002311188.1| (e_value=3e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT3G53830.1 (e_value=3e-32) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:19940814-19943592 FORWARD LENGTH=472;; (*ITAG) Solyc05g052950.2.1 (e_value=2e-42) genomic_reference:SL2.40ch05 gene_region:62268456-62274027 transcript_region:SL2.40ch05:62268456..62274027- go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 *--- B9PXR3_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00000703g0009.1 protein AED:0.10 eAED:0.10 QI:240|1|1|1|1|1|4|171|475; (*GB) gi|363814400|ref|NP_001242838.1| (e_value=0.0) uncharacterized protein LOC100790001 precursor [Glycine max];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=1e-120) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=7e-110) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g064450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000703g0007.1 protein AED:0.46 eAED:0.48 QI:0|0|0|0.75|1|1|4|0|175; (*GB) gi|225461013|ref|XP_002280849.1| (e_value=3e-38) PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera];; (*TAIR) AT1G50740.1 (e_value=2e-31) | Symbols: | Transmembrane proteins 14C | chr1:18807861-18808765 FORWARD LENGTH=119;; (*ITAG) Solyc07g064470.2.1 (e_value=7e-47) genomic_reference:SL2.40ch07 gene_region:63833709-63836015 transcript_region:SL2.40ch07:63833709..63836015- go_terms:GO:0016020 functional_description:"Transmembrane protein 14C (AHRD V1 ***- C3KI83_ANOFI); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00000703g0001.1 protein AED:0.07 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|337; (*GB) gi|297737419|emb|CBI26620.3| (e_value=1e-104) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G54880.1 (e_value=6e-48) | Symbols: | DTW domain-containing protein | chr5:22291920-22293104 FORWARD LENGTH=394;; (*ITAG) Solyc07g064480.1.1 (e_value=5e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63836340-63837317 transcript_region:SL2.40ch07:63836340..63837317+ functional_description:"DTW domain-containing protein (AHRD V1 ***- D7MUX4_ARALY); contains Interpro domain(s) IPR005636 DTW "; NbS00000703g0010.1 protein AED:0.59 eAED:0.60 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|56744289|gb|AAW28568.1| (e_value=4e-19) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum];; (*ITAG) Solyc10g054410.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:50749443-50750094 transcript_region:SL2.40ch10:50749443..50750094- functional_description:"Unknown Protein (AHRD V1)"; NbS00000703g0011.1 protein AED:0.52 eAED:0.59 QI:13|0|0|0.33|0|0|3|0|112 NbS00020181g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|1|1|4|0|838; (*GB) gi|359481824|ref|XP_002283010.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940-like [Vitis vinifera];; (*SWP) sp|Q9FL51|Y5694_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1;; (*TAIR) AT5G06940.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr5:2148078-2150771 REVERSE LENGTH=872;; (*ITAG) Solyc03g062660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29060754-29063525 transcript_region:SL2.40ch03:29060754..29063525- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00042198g0008.1 protein AED:0.28 eAED:0.28 QI:0|1|0.90|1|1|1|11|0|544; (*GB) gi|225464551|ref|XP_002272741.1| (e_value=0.0) PREDICTED: prolyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|A5UU62|SYP_ROSS1 (e_value=1e-179) Proline--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=proS PE=3 SV=1;; (*TAIR) AT5G52520.1 (e_value=0.0) | Symbols: OVA6, PRORS1 | Class II aaRS and biotin synthetases superfamily protein | chr5:21311112-21313875 FORWARD LENGTH=543;; (*ITAG) Solyc01g096870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79627044-79633011 transcript_region:SL2.40ch01:79627044..79633011+ go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q7XZD2_RAPSA); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00042198g0007.1 protein AED:0.22 eAED:0.22 QI:141|0.75|0.88|1|0.75|0.88|9|421|566; (*GB) gi|296085414|emb|CBI29146.3| (e_value=3e-106) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g096890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79639191-79646635 transcript_region:SL2.40ch01:79639191..79646635- functional_description:"Genomic DNA chromosome 5 P1 clone MXI22 (AHRD V1 *-*- Q9FK37_ARATH)"; NbS00020517g0011.1 protein AED:0.29 eAED:0.29 QI:68|1|1|1|1|1|5|334|344; (*GB) gi|151301848|gb|ABR92332.1| (e_value=0.0) putative aldo/keto reductase 2 [Salvia miltiorrhiza];; (*SWP) sp|A2XRZ0|AKR2_ORYSI (e_value=0.0) Probable aldo-keto reductase 2 OS=Oryza sativa subsp. indica GN=OsI_15387 PE=3 SV=1;; (*TAIR) AT1G60690.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22349892-22351668 REVERSE LENGTH=345;; (*ITAG) Solyc01g065490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64128442-64131779 transcript_region:SL2.40ch01:64128442..64131779+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase (AHRD V1 **-- A2Q5A8_MEDTR); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00020517g0007.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|224069096|ref|XP_002302899.1| (e_value=5e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XQ45|AKR3_ORYSJ (e_value=3e-30) Probable aldo-keto reductase 3 OS=Oryza sativa subsp. japonica GN=Os04g0339400 PE=2 SV=2;; (*TAIR) AT1G60680.1 (e_value=3e-31) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22347824-22349236 REVERSE LENGTH=346;; (*ITAG) Solyc09g098090.2.1 (e_value=4e-42) genomic_reference:SL2.40ch09 gene_region:67260446-67263935 transcript_region:SL2.40ch09:67260446..67263935+ go_terms:GO:0004033 functional_description:"Aldo/keto reductase (AHRD V1 **** A2Q5A8_MEDTR); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbS00020517g0002.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|185; (*GB) gi|255555176|ref|XP_002518625.1| (e_value=2e-103) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G05510.1 (e_value=7e-101) | Symbols: | Protein of unknown function (DUF1264) | chr1:1629527-1630690 FORWARD LENGTH=241;; (*ITAG) Solyc09g098120.2.1 (e_value=8e-124) genomic_reference:SL2.40ch09 gene_region:67297118-67298585 transcript_region:SL2.40ch09:67297118..67298585+ functional_description:"DUF1264 domain protein (AHRD V1 **-- B8NLT6_ASPFN); contains Interpro domain(s) IPR010686 Protein of unknown function DUF1264 "; NbS00015234g0011.1 protein AED:0.14 eAED:0.14 QI:204|0.89|0.96|1|0.51|0.6|30|230|1275; (*GB) gi|156556172|emb|CAO94660.1| (e_value=0.0) Multidrug Resistance associated Protein 1 [Catharanthus roseus];; (*SWP) sp|Q9SKX0|AB13C_ARATH (e_value=0.0) ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3;; (*TAIR) AT2G07680.1 (e_value=0.0) | Symbols: ATMRP11, MRP11, ABCC13 | multidrug resistance-associated protein 11 | chr2:3514774-3522491 FORWARD LENGTH=1404;; (*ITAG) Solyc03g117540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60717946-60738473 transcript_region:SL2.40ch03:60717946..60738473+ go_terms:GO:0008559 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9I191_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0008559 NbS00015234g0010.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|737; (*GB) gi|224072735|ref|XP_002303855.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAH3|Y1887_ARATH (e_value=0.0) Putative receptor-like protein kinase At1g80870 OS=Arabidopsis thaliana GN=At1g80870 PE=2 SV=1;; (*TAIR) AT1G80870.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:30392133-30394211 FORWARD LENGTH=692;; (*ITAG) Solyc03g117550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60742965-60745067 transcript_region:SL2.40ch03:60742965..60745067+ go_terms:GO:0005975,GO:0006468 functional_description:"Receptor protein kinase-like (AHRD V1 *-*- Q5JN26_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005975,GO:0006468 NbS00024120g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|2|0|383; (*GB) gi|297810487|ref|XP_002873127.1| (e_value=1e-74) GDSL-motif lipase/hydrolase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=5e-71) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=4e-72) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc12g017460.1.1 (e_value=2e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00037427g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|66; (*GB) gi|32402382|gb|AAN52773.1| (e_value=3e-28) MADS-box protein AGL16-II [Arabidopsis thaliana];; (*SWP) sp|Q9SI38|ANR1_ARATH (e_value=3e-28) MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1;; (*TAIR) AT2G14210.1 (e_value=2e-29) | Symbols: ANR1, AGL44 | AGAMOUS-like 44 | chr2:6018841-6023585 FORWARD LENGTH=234;; (*ITAG) Solyc04g076680.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:59173209-59179096 transcript_region:SL2.40ch04:59173209..59179096+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00037427g0005.1 protein AED:0.02 eAED:0.02 QI:74|1|1|1|1|1|2|201|146; (*GB) gi|256141|gb|AAB23378.1| (e_value=3e-92) orf [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=9e-32) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70890.1 (e_value=2e-23) | Symbols: MLP43 | MLP-like protein 43 | chr1:26725912-26726489 REVERSE LENGTH=158;; (*ITAG) Solyc08g023660.2.1 (e_value=5e-85) genomic_reference:SL2.40ch08 gene_region:17737993-17739269 transcript_region:SL2.40ch08:17737993..17739269+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00016417g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.93|1|0.86|0.93|16|0|668; (*GB) gi|456309|dbj|BAA05648.1| (e_value=0.0) protein kinase [Nicotiana tabacum];; (*SWP) sp|O22042|M3K3_ARATH (e_value=0.0) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3 PE=1 SV=1;; (*TAIR) AT3G06030.1 (e_value=0.0) | Symbols: ANP3, MAPKKK12, NP3 | NPK1-related protein kinase 3 | chr3:1818895-1822705 REVERSE LENGTH=651;; (*ITAG) Solyc01g079750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71407076-71414432 transcript_region:SL2.40ch01:71407076..71414432- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0004711 NbS00016417g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.66|1|1|3|0|262; (*GB) gi|225435979|ref|XP_002271597.1| (e_value=2e-83) PREDICTED: protein SENSITIVITY TO RED LIGHT REDUCED 1 [Vitis vinifera];; (*SWP) sp|Q8GWZ6|SRR1_ARATH (e_value=1e-63) Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2;; (*TAIR) AT5G59560.2 (e_value=7e-65) | Symbols: SRR1 | sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275;; (*ITAG) Solyc11g005260.1.1 (e_value=2e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:219201-221453 transcript_region:SL2.40ch11:219201..221453+ functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 **-- Q4PRK8_ARATH); contains Interpro domain(s) IPR012942 SRR1 "; NbC25589785g0001.1 protein AED:0.01 eAED:0.01 QI:70|1|0.5|1|0|0|2|0|37; (*ITAG) Solyc07g065430.2.1 (e_value=2e-16) genomic_reference:SL2.40ch07 gene_region:64411861-64416712 transcript_region:SL2.40ch07:64411861..64416712- go_terms:GO:0030001,GO:0005694 functional_description:"DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI); contains Interpro domain(s) IPR013048 Meiotic recombination Spo11 "; GO:0030001,GO:0005694 NbS00003303g0011.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|1|1|2|0|296; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=9e-95) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=4e-75) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT1G64940.1 (e_value=2e-77) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc03g096990.2.1 (e_value=8e-101) genomic_reference:SL2.40ch03 gene_region:52800830-52805612 transcript_region:SL2.40ch03:52800830..52805612+ go_terms:GO:0019825 functional_description:"Cytochrome P450 89A2 (AHRD V1 ***- C89A2_ARATH); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00003303g0010.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|352; (*GB) gi|296084921|emb|CBI28330.3| (e_value=2e-118) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=8e-100) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc06g074340.2.1 (e_value=2e-129) genomic_reference:SL2.40ch06 gene_region:42348964-42350338 transcript_region:SL2.40ch06:42348964..42350338- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY)"; GO:0016787 NbS00050279g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|494; (*GB) gi|359496637|ref|XP_003635287.1| (e_value=1e-137) PREDICTED: U-box domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|O81902|PUB8_ARATH (e_value=3e-106) U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1;; (*TAIR) AT4G21350.1 (e_value=2e-107) | Symbols: B80, PUB8 | plant U-box 8 | chr4:11356143-11357267 REVERSE LENGTH=374;; (*ITAG) Solyc02g079740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38763924-38765039 transcript_region:SL2.40ch02:38763924..38765039+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (Fragment) (AHRD V1 ***- B1P3P0_ARAHA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00050279g0003.1 protein AED:0.51 eAED:0.55 QI:0|0|0|1|0|0|2|0|71 NbS00055824g0016.1 protein AED:0.21 eAED:0.23 QI:0|0|0|0.42|0.66|0.71|7|0|561; (*GB) gi|225457315|ref|XP_002281558.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera];; (*SWP) sp|Q8LK93|PP145_ARATH (e_value=5e-113) Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2;; (*TAIR) AT2G02980.1 (e_value=4e-114) | Symbols: OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:868468-870279 FORWARD LENGTH=603;; (*ITAG) Solyc03g115570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59288233-59290008 transcript_region:SL2.40ch03:59288233..59290008- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00055824g0013.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|0.33|0.25|4|0|820; (*GB) gi|224141047|ref|XP_002323886.1| (e_value=8e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15430.1 (e_value=9e-11) | Symbols: | Plant calmodulin-binding protein-related | chr5:5010180-5011616 FORWARD LENGTH=478;; (*ITAG) Solyc06g069620.1.1 (e_value=3e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00055824g0011.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|1|1|7|336|454; (*GB) gi|255547297|ref|XP_002514706.1| (e_value=0.0) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9FF12|GSXL9_ARATH (e_value=0.0) Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1;; (*TAIR) AT5G07800.1 (e_value=0.0) | Symbols: | Flavin-binding monooxygenase family protein | chr5:2486717-2489241 REVERSE LENGTH=460;; (*ITAG) Solyc03g115560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59283572-59287060 transcript_region:SL2.40ch03:59283572..59287060+ go_terms:GO:0004499 functional_description:"Dimethylaniline monooxygenase-like protein (AHRD V1 **** Q9FF12_ARATH); contains Interpro domain(s) IPR000960 Flavin-containing monooxygenase FMO "; GO:0004499 NbS00055824g0012.1 protein AED:0.34 eAED:0.34 QI:0|0.25|0.2|1|0.25|0.2|5|519|190 NbS00031392g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|123; (*ITAG) Solyc01g067970.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69400119-69400415 transcript_region:SL2.40ch01:69400119..69400415+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031392g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|185; (*ITAG) Solyc05g005650.1.1 (e_value=3e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:488527-489039 transcript_region:SL2.40ch05:488527..489039- functional_description:"Unknown Protein (AHRD V1)"; NbS00031392g0011.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.22|0.88|0.62|0.66|9|0|1266; (*GB) gi|359473443|ref|XP_002264500.2| (e_value=3e-140) PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=2e-114) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=2e-115) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00031392g0012.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|697; (*GB) gi|359473443|ref|XP_002264500.2| (e_value=1e-111) PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=1e-75) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=8e-77) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00003284g0006.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.75|0.75|1|1|4|0|196; (*GB) gi|193784667|dbj|BAG50820.1| (e_value=4e-110) MAP kinase [Nicotiana benthamiana];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=8e-105) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=8e-96) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc08g014420.2.1 (e_value=2e-104) genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00003284g0009.1 protein AED:0.26 eAED:0.32 QI:0|0.66|0.5|1|1|0.75|4|0|250; (*GB) gi|2138340|gb|AAB58396.1| (e_value=8e-168) salicylic acid-activated MAP kinase [Nicotiana tabacum];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=4e-163) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=1e-144) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc12g019460.1.1 (e_value=1e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10385358-10395971 transcript_region:SL2.40ch12:10385358..10395971+ go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase 1 (AHRD V1 ***- Q84MI6_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0006468 NbS00006279g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|0|0|2|0|71; (*GB) gi|296082517|emb|CBI21522.3| (e_value=4e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93WU9|WRK51_ARATH (e_value=2e-22) Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1;; (*TAIR) AT5G64810.1 (e_value=2e-23) | Symbols: WRKY51, ATWRKY51 | WRKY DNA-binding protein 51 | chr5:25908415-25909687 FORWARD LENGTH=194;; (*ITAG) Solyc04g051690.2.1 (e_value=2e-38) genomic_reference:SL2.40ch04 gene_region:50163412-50166584 transcript_region:SL2.40ch04:50163412..50166584+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 ***- C9DI05_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00006279g0002.1 protein AED:0.34 eAED:0.43 QI:0|0|0|1|1|1|2|0|60 NbS00015654g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|379056256|dbj|BAL68168.1| (e_value=3e-113) ethylene response factor #193 [Nicotiana tabacum];; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=2e-24) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1;; (*TAIR) AT5G44210.1 (e_value=6e-25) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc10g009110.1.1 (e_value=4e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00020485g0013.1 protein AED:0.09 eAED:0.19 QI:0|0|0|1|0|0|6|0|895; (*ITAG) Solyc03g082770.1.1 (e_value=7e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46188149-46189117 transcript_region:SL2.40ch03:46188149..46189117- go_terms:GO:0009664 functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00020485g0011.1 protein AED:0.31 eAED:0.42 QI:0|0|0|1|0|0|5|0|340 NbS00020485g0012.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|217 NbS00020485g0010.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|0|0|2|0|117 NbS00054176g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|255571275|ref|XP_002526587.1| (e_value=3e-152) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G03210.1 (e_value=7e-130) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:740987-742093 FORWARD LENGTH=368;; (*ITAG) Solyc03g031850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8594893-8595975 transcript_region:SL2.40ch03:8594893..8595975- functional_description:"Unknown Protein (AHRD V1)"; NbS00003008g0005.1 protein AED:0.05 eAED:0.05 QI:118|1|1|1|1|1|3|872|304; (*GB) gi|356553066|ref|XP_003544879.1| (e_value=4e-117) PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Glycine max];; (*SWP) sp|Q56Y11|DDPS2_ARATH (e_value=3e-110) Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana GN=At5g58770 PE=2 SV=2;; (*TAIR) AT5G58770.1 (e_value=2e-111) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr5:23734396-23735495 FORWARD LENGTH=310;; (*ITAG) Solyc10g085150.1.1 (e_value=9e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63759473-63761440 transcript_region:SL2.40ch10:63759473..63761440- go_terms:GO:0016765 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 ***- D8G636_9CYAN); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0016765 NbS00003008g0006.1 protein AED:0.28 eAED:0.28 QI:73|1|0.85|1|0.83|1|7|0|246; (*GB) gi|359482055|ref|XP_002274825.2| (e_value=3e-127) PREDICTED: methyltransferase-like protein 21C-like [Vitis vinifera];; (*TAIR) AT5G01470.3 (e_value=1e-123) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:190953-192462 FORWARD LENGTH=239;; (*ITAG) Solyc10g085160.1.1 (e_value=3e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63762021-63765608 transcript_region:SL2.40ch10:63762021..63765608- functional_description:"UPF0563 protein C17orf95 homolog (AHRD V1 *--- CQ095_XENLA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00014933g0005.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|162; (*GB) gi|225432240|ref|XP_002270819.1| (e_value=3e-83) PREDICTED: 50S ribosomal protein L18, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SX68|RK18_ARATH (e_value=3e-77) 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1;; (*TAIR) AT1G48350.1 (e_value=2e-78) | Symbols: | Ribosomal L18p/L5e family protein | chr1:17867269-17868215 FORWARD LENGTH=170;; (*ITAG) Solyc12g098890.1.1 (e_value=4e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64598713-64601622 transcript_region:SL2.40ch12:64598713..64601622- go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6TYR5_MAIZE); contains Interpro domain(s) IPR004389 Ribosomal protein L18, bacterial "; GO:0005840 NbS00014933g0006.1 protein AED:0.00 eAED:0.00 QI:283|1|1|1|0|0.5|2|373|77; (*GB) gi|225432216|ref|XP_002270027.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100254553 [Vitis vinifera];; (*ITAG) Solyc12g098880.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64597137-64597519 transcript_region:SL2.40ch12:64597137..64597519+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014933g0008.1 protein AED:0.27 eAED:0.27 QI:423|0.25|0|0.4|0.25|0.4|5|0|133 NbS00021444g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.57|0.71|0.66|0.85|7|0|325; (*GB) gi|255554070|ref|XP_002518075.1| (e_value=6e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G32760.1 (e_value=1e-77) | Symbols: | unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:13892140-13894295 FORWARD LENGTH=352;; (*ITAG) Solyc09g092030.2.1 (e_value=5e-137) genomic_reference:SL2.40ch09 gene_region:66549668-66556523 transcript_region:SL2.40ch09:66549668..66556523- functional_description:"UV radiation resistance-associated gene protein (AHRD V1 *-*- B2WJC3_PYRTR)"; NbS00018685g0015.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|1|3|0|187; (*GB) gi|224075846|ref|XP_002304794.1| (e_value=2e-75) type-a response regulator [Populus trichocarpa];; (*SWP) sp|O80366|ARR9_ARATH (e_value=5e-65) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=4e-66) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc02g071220.2.1 (e_value=3e-98) genomic_reference:SL2.40ch02 gene_region:35270722-35271697 transcript_region:SL2.40ch02:35270722..35271697- go_terms:GO:0003700 functional_description:"Response regulator 5 (AHRD V1 ***- Q9FRZ0_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0003700 NbS00018685g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.6|0.33|1|1|1|6|0|464; (*GB) gi|225463384|ref|XP_002271705.1| (e_value=2e-171) PREDICTED: uncharacterized protein LOC100258847 [Vitis vinifera];; (*SWP) sp|Q54GB2|CTSL2_DICDI (e_value=1e-56) CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1;; (*TAIR) AT5G46410.2 (e_value=3e-115) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=456;; (*ITAG) Solyc02g071250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35304214-35311172 transcript_region:SL2.40ch02:35304214..35311172- go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00018685g0019.1 protein AED:0.28 eAED:0.28 QI:197|0.84|0.71|0.92|0.76|0.71|14|0|1042; (*GB) gi|297740633|emb|CBI30815.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74970|PRP39_SCHPO (e_value=1e-43) Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=2 SV=1;; (*TAIR) AT5G46400.1 (e_value=1e-162) | Symbols: AT PRP39-2, PRP39-2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:18820032-18824522 FORWARD LENGTH=1036;; (*ITAG) Solyc02g071230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35278320-35290177 transcript_region:SL2.40ch02:35278320..35290177+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-processing factor 39 (AHRD V1 ***- B2VZM3_PYRTR); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helix "; GO:0005488,GO:0005622 NbS00006070g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0|0.2|5|633|194; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=2e-67) transcription factor IIIA [Solanum lycopersicum];; (*SWP) sp|Q8VHT8|TF3A_RAT (e_value=4e-11) Transcription factor IIIA OS=Rattus norvegicus GN=Gtf3a PE=2 SV=2;; (*TAIR) AT1G72050.2 (e_value=5e-36) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412;; (*ITAG) Solyc10g077110.1.1 (e_value=3e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00006070g0008.1 protein AED:0.05 eAED:0.05 QI:24|1|1|1|0.2|0.16|6|624|458; (*GB) gi|225440264|ref|XP_002278800.1| (e_value=4e-169) PREDICTED: uncharacterized protein LOC100243149 [Vitis vinifera];; (*TAIR) AT5G45790.2 (e_value=1e-157) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:18572345-18573664 FORWARD LENGTH=439;; (*ITAG) Solyc10g077100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59313554-59314930 transcript_region:SL2.40ch10:59313554..59314930+ go_terms:GO:0005622 functional_description:"Os12g0130100 protein (Fragment) (AHRD V1 *-*- Q0IQC7_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00025367g0009.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|6|0|259; (*GB) gi|356564442|ref|XP_003550463.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100794732 [Glycine max];; (*TAIR) AT5G59810.1 (e_value=5e-20) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00025367g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|321158523|dbj|BAJ72664.1| (e_value=1e-139) ethylene response factor 3 [Nicotiana benthamiana];; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=2e-128) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1;; (*TAIR) AT5G44210.1 (e_value=1e-26) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc07g053740.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59491419-59492096 transcript_region:SL2.40ch07:59491419..59492096+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00019704g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.63|0.5|0.91|0.63|0.58|12|203|814; (*GB) gi|359476012|ref|XP_003631778.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=4e-122) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT2G24370.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc08g069180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55439154-55443169 transcript_region:SL2.40ch08:55439154..55443169- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00037765g0001.1 protein AED:0.17 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|151; (*ITAG) Solyc01g087140.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:73828205-73832676 transcript_region:SL2.40ch01:73828205..73832676+ functional_description:"Harpin-induced protein (AHRD V1 *-*- B6TDG9_MAIZE)"; NbS00017546g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|147; (*GB) gi|3065895|gb|AAC14323.1| (e_value=2e-69) TSI1 [Nicotiana tabacum];; (*SWP) sp|O04682|PTI6_SOLLC (e_value=1e-58) Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1;; (*TAIR) AT4G23750.2 (e_value=3e-24) | Symbols: CRF2, TMO3 | cytokinin response factor 2 | chr4:12376751-12377782 FORWARD LENGTH=343;; (*ITAG) Solyc06g082590.1.1 (e_value=8e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44653700-44654446 transcript_region:SL2.40ch06:44653700..44654446- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding IPR017392 Pathogenesis-related genes transcriptional activator PTI6 "; GO:0003677,GO:0006355 NbS00017546g0006.1 protein AED:0.21 eAED:0.29 QI:78|0.5|0.4|1|0.5|0.4|5|0|396; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=4e-100) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=3e-52) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT3G03620.1 (e_value=1e-58) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=5e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00011781g0008.1 protein AED:0.18 eAED:0.21 QI:0|0.5|0.28|1|0.5|0.42|7|0|696; (*GB) gi|70780055|gb|AAZ08351.1| (e_value=0.0) ethylene overproducer-like 1 [Solanum lycopersicum];; (*SWP) sp|Q9ZQX6|ETOL1_ARATH (e_value=0.0) ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1;; (*TAIR) AT4G02680.1 (e_value=0.0) | Symbols: EOL1 | ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888;; (*ITAG) Solyc09g065640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59410288-59416571 transcript_region:SL2.40ch09:59410288..59416571+ go_terms:GO:0005515 functional_description:"Os11g0585900 protein (Fragment) (AHRD V1 **-- Q0IRY6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00011781g0012.1 protein AED:0.07 eAED:0.34 QI:0|0|0|1|1|1|2|0|75; (*ITAG) Solyc11g069450.1.1 (e_value=3e-13) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51115589-51116110 transcript_region:SL2.40ch11:51115589..51116110+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 **-- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00011781g0009.1 protein AED:0.46 eAED:0.54 QI:0|0.5|0.33|1|0|0|3|0|88; (*GB) gi|350539533|ref|NP_001234175.1| (e_value=1e-28) ethylene-overproducer1-like protein [Solanum lycopersicum];; (*SWP) sp|Q9ZQX6|ETOL1_ARATH (e_value=1e-22) ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1;; (*TAIR) AT4G02680.1 (e_value=9e-24) | Symbols: EOL1 | ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888;; (*ITAG) Solyc09g065640.2.1 (e_value=2e-31) genomic_reference:SL2.40ch09 gene_region:59410288-59416571 transcript_region:SL2.40ch09:59410288..59416571+ go_terms:GO:0005515 functional_description:"Os11g0585900 protein (Fragment) (AHRD V1 **-- Q0IRY6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00002839g0011.1 protein AED:0.14 eAED:0.14 QI:285|1|1|1|0|0|3|235|514; (*GB) gi|225460694|ref|XP_002270196.1| (e_value=0.0) PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C8N5|STOP1_ARATH (e_value=3e-162) Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1;; (*TAIR) AT1G34370.1 (e_value=2e-163) | Symbols: STOP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12551002-12552501 FORWARD LENGTH=499;; (*ITAG) Solyc11g017140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7925834-7927291 transcript_region:SL2.40ch11:7925834..7927291- go_terms:GO:0005622 functional_description:"C2-H2 zinc finger protein (AHRD V1 ***- B0YR09_SOYBN); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00002839g0012.1 protein AED:0.17 eAED:0.23 QI:0|0|0|1|0|0.25|4|0|367; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-100) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002839g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.6|0.5|1|0.8|0.83|6|0|842; (*GB) gi|331703946|gb|AED89984.1| (e_value=0.0) PSL1a [Solanum chacoense x Solanum tuberosum];; (*TAIR) AT1G34355.1 (e_value=7e-79) | Symbols: ATPS1, PS1 | forkhead-associated (FHA) domain-containing protein | chr1:12536497-12541730 FORWARD LENGTH=1477;; (*ITAG) Solyc11g017130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7921382-7925320 transcript_region:SL2.40ch11:7921382..7925320+ functional_description:"Forkhead-associated domain-containing protein (AHRD V1 *-*- D7KK60_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00004498g0020.1 protein AED:0.01 eAED:0.01 QI:338|1|1|1|1|1|2|173|310; (*GB) gi|255561632|ref|XP_002521826.1| (e_value=8e-81) axonemal dynein light chain, putative [Ricinus communis];; (*SWP) sp|Q86A88|DYL_DICDI (e_value=2e-18) Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1;; (*TAIR) AT5G20110.1 (e_value=3e-40) | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209;; (*ITAG) Solyc06g071180.2.1 (e_value=2e-126) genomic_reference:SL2.40ch06 gene_region:40159376-40160978 transcript_region:SL2.40ch06:40159376..40160978+ go_terms:GO:0005875,GO:0016021 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 *-*- Q7RN10_PLAYO); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0005875,GO:0016021 NbS00004498g0018.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.71|1|0.83|0.57|7|0|679; (*GB) gi|255540863|ref|XP_002511496.1| (e_value=0.0) HIPL1 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=0.0) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=0.0) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc06g071150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40129609-40134130 transcript_region:SL2.40ch06:40129609..40134130+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00004498g0019.1 protein AED:0.22 eAED:0.22 QI:88|1|1|1|0.66|1|4|772|330; (*GB) gi|224119172|ref|XP_002318004.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT3G47850.1 (e_value=8e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:17654256-17656000 REVERSE LENGTH=352;; (*ITAG) Solyc06g071170.2.1 (e_value=3e-137) genomic_reference:SL2.40ch06 gene_region:40148289-40158074 transcript_region:SL2.40ch06:40148289..40158074+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004498g0021.1 protein AED:0.11 eAED:0.11 QI:0|1|0.85|1|1|1|7|0|671; (*GB) gi|255540853|ref|XP_002511491.1| (e_value=0.0) galactosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9LV16|B3GTJ_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2;; (*TAIR) AT5G62620.1 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr5:25137136-25139764 FORWARD LENGTH=681;; (*ITAG) Solyc06g071160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40134685-40138844 transcript_region:SL2.40ch06:40134685..40138844- go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00004498g0026.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|103; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-14) hypothetical protein [Nicotiana tabacum]; NbS00012441g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|6|320|377; (*GB) gi|296089207|emb|CBI38910.3| (e_value=5e-54) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73440.1 (e_value=3e-37) | Symbols: | calmodulin-related | chr1:27611418-27612182 FORWARD LENGTH=254;; (*ITAG) Solyc01g090920.2.1 (e_value=7e-112) genomic_reference:SL2.40ch01 gene_region:76382960-76386709 transcript_region:SL2.40ch01:76382960..76386709- go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 ***- B6TBW8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00034250g0003.1 protein AED:0.08 eAED:0.08 QI:295|0.90|0.91|1|0.54|0.58|12|294|582; (*GB) gi|297827497|ref|XP_002881631.1| (e_value=0.0) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P47082|AVT1_YEAST (e_value=2e-42) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT2G39130.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr2:16323171-16326744 REVERSE LENGTH=550;; (*ITAG) Solyc11g008440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2646308-2649734 transcript_region:SL2.40ch11:2646308..2649734+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter (AHRD V1 **** B9HLH9_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00018436g0007.1 protein AED:0.48 eAED:0.48 QI:0|1|0.33|1|1|0.66|3|0|168; (*GB) gi|224083528|ref|XP_002307061.1| (e_value=4e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08750.3 (e_value=2e-51) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:2852912-2854343 FORWARD LENGTH=370; NbS00018436g0006.1 protein AED:0.66 eAED:0.73 QI:57|0|0|1|1|0.5|2|0|106; (*GB) gi|225438355|ref|XP_002273487.1| (e_value=9e-19) PREDICTED: uncharacterized protein LOC100243998 [Vitis vinifera];; (*TAIR) AT5G08750.3 (e_value=2e-17) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:2852912-2854343 FORWARD LENGTH=370; NbS00005858g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|266; (*GB) gi|255544802|ref|XP_002513462.1| (e_value=3e-22) ankyrin repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc05g041580.1.1 (e_value=6e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:51463194-51466137 transcript_region:SL2.40ch05:51463194..51466137+ functional_description:"Genomic DNA chromosome 5 P1 clone MIK22 (AHRD V1 **-- Q9FFL9_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00032836g0007.1 protein AED:0.27 eAED:0.27 QI:186|0.85|0.86|1|0.78|0.8|15|48|337; (*GB) gi|255564164|ref|XP_002523079.1| (e_value=5e-80) arginine/serine-rich splicing factor, putative [Ricinus communis];; (*SWP) sp|O22315|SRSF1_ARATH (e_value=3e-71) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G02840.3 (e_value=2e-72) | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303;; (*ITAG) Solyc09g075090.1.1 (e_value=6e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62395517-62400644 transcript_region:SL2.40ch09:62395517..62400644- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00058751g0004.1 protein AED:0.14 eAED:0.15 QI:0|1|0.66|1|0.8|0.83|6|0|540; (*GB) gi|359474736|ref|XP_002273482.2| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=6e-109) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT1G31650.1 (e_value=0.0) | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide exchange factor 14 | chr1:11326474-11329767 REVERSE LENGTH=576;; (*ITAG) Solyc08g075120.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56435856-56442881 transcript_region:SL2.40ch08:56435856..56442881- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein (AHRD V1 ***- B6UC56_MAIZE); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00052687g0004.1 protein AED:0.17 eAED:0.17 QI:279|0.92|0.93|1|0.71|0.66|15|228|485; (*GB) gi|359491379|ref|XP_002278753.2| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=2e-171) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=7e-174) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc06g071560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40443925-40450397 transcript_region:SL2.40ch06:40443925..40450397+ go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00013840g0004.1 protein AED:0.26 eAED:0.30 QI:0|0.77|0.6|1|0.77|0.7|10|0|766; (*GB) gi|302143004|emb|CBI20299.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G53050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19772574-19775531 FORWARD LENGTH=694;; (*ITAG) Solyc07g063130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62922350-62930717 transcript_region:SL2.40ch07:62922350..62930717- go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00051438g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|0|0|2|0|757; (*GB) gi|359473521|ref|XP_002273398.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At2g02150-like [Vitis vinifera];; (*SWP) sp|P0C894|PP143_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1;; (*TAIR) AT2G02150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:550340-552625 REVERSE LENGTH=761;; (*ITAG) Solyc02g021280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13109170-13111449 transcript_region:SL2.40ch02:13109170..13111449- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LLV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00044962g0015.1 protein AED:0.20 eAED:0.20 QI:223|0.66|0.75|1|0.66|0.5|4|0|254; (*GB) gi|224142525|ref|XP_002324606.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*TAIR) AT4G20060.1 (e_value=3e-61) | Symbols: EMB1895 | ARM repeat superfamily protein | chr4:10854790-10859330 REVERSE LENGTH=1134;; (*ITAG) Solyc02g064610.2.1 (e_value=2e-129) genomic_reference:SL2.40ch02 gene_region:30287437-30295506 transcript_region:SL2.40ch02:30287437..30295506+ functional_description:"Integrator complex subunit 7 (AHRD V1 *--- INT7_CHICK)"; NbS00044962g0002.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|812; (*GB) gi|225451681|ref|XP_002276495.1| (e_value=1e-149) PREDICTED: uncharacterized protein LOC100265170 [Vitis vinifera];; (*TAIR) AT4G20060.1 (e_value=1e-98) | Symbols: EMB1895 | ARM repeat superfamily protein | chr4:10854790-10859330 REVERSE LENGTH=1134;; (*ITAG) Solyc02g064620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30290480-30295579 transcript_region:SL2.40ch02:30290480..30295579+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044962g0011.1 protein AED:0.37 eAED:0.37 QI:0|1|0.8|1|1|1|5|0|300; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=6e-60) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=5e-61) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc02g064630.2.1 (e_value=4e-116) genomic_reference:SL2.40ch02 gene_region:30298568-30306185 transcript_region:SL2.40ch02:30298568..30306185+ go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone-like protein (Fragment) (AHRD V1 *--- Q93VE8_FRILI); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00044962g0006.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|147784037|emb|CAN70108.1| (e_value=3e-24) hypothetical protein VITISV_002044 [Vitis vinifera];; (*TAIR) AT5G67610.1 (e_value=3e-24) | Symbols: | Uncharacterized conserved protein (DUF2215) | chr5:26961224-26963614 REVERSE LENGTH=486;; (*ITAG) Solyc02g064580.2.1 (e_value=4e-45) genomic_reference:SL2.40ch02 gene_region:30264429-30273186 transcript_region:SL2.40ch02:30264429..30273186+ functional_description:"Rhodopsin-like receptor (AHRD V1 ***- B6TUA3_MAIZE); contains Interpro domain(s) IPR019358 Protein of unknown function DUF2215 "; NbS00015555g0001.1 protein AED:0.28 eAED:0.28 QI:285|0.62|0.41|0.94|1|1|17|0|949; (*GB) gi|296082067|emb|CBI21072.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5U241|PD5BB_XENLA (e_value=7e-17) Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2;; (*TAIR) AT4G31880.1 (e_value=2e-130) | Symbols: | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). | chr4:15419435-15423939 REVERSE LENGTH=873;; (*ITAG) Solyc06g065710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00015819g0007.1 protein AED:0.03 eAED:0.03 QI:622|1|0.75|1|0.66|0.5|4|0|894; (*GB) gi|255559719|ref|XP_002520879.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc06g048950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28521770-28525682 transcript_region:SL2.40ch06:28521770..28525682+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00030484g0004.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|1|1|2|0|233; (*ITAG) Solyc12g098900.1.1 (e_value=8e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64603646-64605410 transcript_region:SL2.40ch12:64603646..64605410+ functional_description:"Late embryogenesis abundant protein D-29 (AHRD V1 *-*- LEA29_GOSHI)"; NbS00037317g0002.1 protein AED:0.12 eAED:0.12 QI:357|1|1|1|0.4|0.66|6|270|285; (*GB) gi|151347473|gb|ABS01349.1| (e_value=0.0) hypersensitive-induced response protein [Carica papaya];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=0.0) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=0.0) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00037317g0008.1 protein AED:0.18 eAED:0.19 QI:293|0.5|0.8|1|0.25|0.4|5|524|276; (*GB) gi|46452120|gb|AAS98165.1| (e_value=1e-156) hypersensitive-induced reaction protein [Capsicum annuum];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=6e-151) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=4e-152) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=6e-163) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00049910g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|670; (*GB) gi|359431001|gb|AEV46311.1| (e_value=9e-171) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=4e-140) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT2G36190.1 (e_value=2e-124) | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 | chr2:15174951-15177785 REVERSE LENGTH=591;; (*ITAG) Solyc09g010090.2.1 (e_value=7e-171) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00036873g0004.1 protein AED:0.50 eAED:0.67 QI:0|0|0|0.75|0|0.25|4|0|153; (*GB) gi|61223199|gb|AAX40666.1| (e_value=1e-30) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=4e-12) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*ITAG) Solyc12g006570.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00036873g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|5|0|273; (*GB) gi|343409100|gb|AEM23830.1| (e_value=5e-69) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=1e-31) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT4G20200.1 (e_value=5e-27) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:10908672-10911151 REVERSE LENGTH=604;; (*ITAG) Solyc07g052140.2.1 (e_value=5e-73) genomic_reference:SL2.40ch07 gene_region:57994754-57995894 transcript_region:SL2.40ch07:57994754..57995894- go_terms:GO:0016829 functional_description:"(-)-germacrene D synthase (AHRD V1 ***- Q64K29_9ROSI); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbS00000601g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|75; (*GB) gi|255558097|ref|XP_002520077.1| (e_value=2e-22) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P92535|M1010_ARATH (e_value=6e-15) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*ITAG) ATMG01010.1 (e_value=5e-16) | Symbols: ORF118 | Unknown conserved protein | chrM:261105-261461 REVERSE LENGTH=118;; (*ITAG) Solyc11g056330.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00035932g0004.1 protein AED:0.26 eAED:0.26 QI:302|0|0.5|1|0|0.5|2|0|331; (*GB) gi|356514529|ref|XP_003525958.1| (e_value=1e-60) PREDICTED: DAZ-associated protein 1-like [Glycine max];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=4e-36) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT1G58470.1 (e_value=9e-59) | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | chr1:21727374-21728539 FORWARD LENGTH=360;; (*ITAG) Solyc04g077520.2.1 (e_value=2e-153) genomic_reference:SL2.40ch04 gene_region:60070423-60072137 transcript_region:SL2.40ch04:60070423..60072137- go_terms:GO:0003730 functional_description:"RNA binding protein (AHRD V1 **-* Q9C652_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003730 NbS00044276g0004.1 protein AED:0.32 eAED:0.33 QI:0|0.8|0.83|1|1|1|6|0|251; (*GB) gi|255562860|ref|XP_002522435.1| (e_value=7e-87) membrane associated ring finger 1,8, putative [Ricinus communis];; (*TAIR) AT3G47550.6 (e_value=2e-75) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17525278 FORWARD LENGTH=288;; (*ITAG) Solyc03g116030.2.1 (e_value=7e-94) genomic_reference:SL2.40ch03 gene_region:59609195-59614443 transcript_region:SL2.40ch03:59609195..59614443+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- MARH3_MOUSE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00000173g0006.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|224077390|ref|XP_002305242.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25690.2 (e_value=2e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:13090421-13090996 REVERSE LENGTH=191;; (*ITAG) Solyc03g008000.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2470707-2471348 transcript_region:SL2.40ch03:2470707..2471348+ go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6N7 (AHRD V1 ***- Q9LTG2_ARATH)"; GO:0005515 NbS00000173g0014.1 protein AED:0.14 eAED:0.16 QI:151|0.92|0.92|1|0.84|0.85|14|928|599; (*GB) gi|302143800|emb|CBI22661.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2JD48|MURC_FRASC (e_value=2e-81) UDP-N-acetylmuramate--L-alanine ligase OS=Frankia sp. (strain CcI3) GN=murC PE=3 SV=1;; (*ITAG) Solyc03g007970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2457428-2463837 transcript_region:SL2.40ch03:2457428..2463837+ go_terms:GO:0008152,GO:0009058,GO:0005737 functional_description:"UDP-N-acetylmuramate-alanine ligase (AHRD V1 ***- Q3LHF7_PHYPA); contains Interpro domain(s) IPR005758 UDP-N-acetylmuramate-alanine ligase "; GO:0008152,GO:0009058,GO:0005737 NbS00000173g0015.1 protein AED:0.28 eAED:0.39 QI:19|1|0.6|1|0.75|0.8|5|0|213; (*GB) gi|255545196|ref|XP_002513659.1| (e_value=3e-54) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6PBM8|RBM18_DANRE (e_value=2e-18) Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1; NbS00000173g0018.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.33|0.5|0.33|3|0|88 NbS00000173g0005.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|351; (*GB) gi|156865908|gb|ABU96467.1| (e_value=0.0) plastid division regulator MinD [Nicotiana tabacum];; (*SWP) sp|Q9MBA2|MIND1_ARATH (e_value=8e-160) Putative septum site-determining protein minD homolog, chloroplastic OS=Arabidopsis thaliana GN=MIND1 PE=1 SV=1;; (*TAIR) AT5G24020.1 (e_value=6e-161) | Symbols: MIND, ARC11, ATMIND1 | septum site-determining protein (MIND) | chr5:8116731-8117711 FORWARD LENGTH=326;; (*ITAG) Solyc03g007980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:2465101-2466096 transcript_region:SL2.40ch03:2465101..2466096- go_terms:GO:0042803,GO:0030899 functional_description:"Septum site-determining protein MinD (AHRD V1 ***- D8FVX6_9CYAN); contains Interpro domain(s) IPR010223 Septum site-determining protein MinD "; GO:0042803,GO:0030899 NbS00000173g0020.1 protein AED:0.21 eAED:0.23 QI:0|0.33|0.5|1|0.33|0.75|4|0|257; (*GB) gi|225464567|ref|XP_002273259.1| (e_value=1e-130) PREDICTED: UPF0326 protein At4g17486-like [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=9e-17) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT4G25660.1 (e_value=6e-113) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:13083677-13084989 FORWARD LENGTH=255;; (*ITAG) Solyc03g008010.2.1 (e_value=3e-156) genomic_reference:SL2.40ch03 gene_region:2471904-2478161 transcript_region:SL2.40ch03:2471904..2478161- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00023675g0005.1 protein AED:0.34 eAED:0.34 QI:229|1|0.85|1|1|0.85|7|0|258; (*GB) gi|225425936|ref|XP_002273043.1| (e_value=8e-81) PREDICTED: uncharacterized protein LOC100252714 [Vitis vinifera];; (*TAIR) AT3G26085.1 (e_value=1e-68) | Symbols: | CAAX amino terminal protease family protein | chr3:9530842-9532397 FORWARD LENGTH=293;; (*ITAG) Solyc05g014190.2.1 (e_value=5e-109) genomic_reference:SL2.40ch05 gene_region:7962697-7964761 transcript_region:SL2.40ch05:7962697..7964761+ go_terms:GO:0016020 functional_description:"CAAX amino terminal protease family protein (AHRD V1 **-- D7LQY7_ARALY); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00058078g0008.1 protein AED:0.04 eAED:0.05 QI:0|0.71|0.5|1|0.71|0.62|8|0|447; (*GB) gi|255562556|ref|XP_002522284.1| (e_value=2e-139) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29680.1 (e_value=3e-117) | Symbols: | Protein of unknown function (DUF1264) | chr1:10377900-10378931 REVERSE LENGTH=237;; (*ITAG) Solyc02g071760.2.1 (e_value=3e-157) genomic_reference:SL2.40ch02 gene_region:35702421-35703670 transcript_region:SL2.40ch02:35702421..35703670- functional_description:"DUF1264 domain protein (AHRD V1 **-- A1CBM4_ASPCL); contains Interpro domain(s) IPR010686 Protein of unknown function DUF1264 "; NbS00018458g0001.1 protein AED:0.21 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|255581309|ref|XP_002531465.1| (e_value=1e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16790.1 (e_value=8e-16) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:9451747-9453168 REVERSE LENGTH=473;; (*ITAG) Solyc08g078290.1.1 (e_value=7e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59263206-59264678 transcript_region:SL2.40ch08:59263206..59264678+ functional_description:"Glycoprotein homolog (AHRD V1 *-*- Q8LCM1_ARATH)"; NbS00018458g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|161; (*ITAG) Solyc08g078290.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59263206-59264678 transcript_region:SL2.40ch08:59263206..59264678+ functional_description:"Glycoprotein homolog (AHRD V1 *-*- Q8LCM1_ARATH)"; NbS00018458g0006.1 protein AED:0.07 eAED:0.07 QI:176|0.66|0.5|1|1|1|4|211|269; (*GB) gi|224137880|ref|XP_002326463.1| (e_value=2e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q05466|HAT4_ARATH (e_value=1e-91) Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1;; (*TAIR) AT4G16780.1 (e_value=8e-93) | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein 2 | chr4:9449291-9450604 FORWARD LENGTH=284;; (*ITAG) Solyc08g078300.2.1 (e_value=2e-130) genomic_reference:SL2.40ch08 gene_region:59267579-59269933 transcript_region:SL2.40ch08:59267579..59269933- go_terms:GO:0043565,GO:0042803 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q40781_PIMBR); contains Interpro domain(s) IPR006712 HD-ZIP protein, N-terminal "; GO:0043565,GO:0042803 NbS00001740g0001.1 protein AED:0.31 eAED:0.86 QI:0|0|0.5|1|0|0.5|2|114|142 NbS00020746g0004.1 protein AED:0.07 eAED:0.07 QI:180|1|1|1|1|1|2|201|213; (*GB) gi|255553189|ref|XP_002517637.1| (e_value=5e-95) GTP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LVZ8|LOR12_ARATH (e_value=9e-90) Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1;; (*TAIR) AT3G15810.1 (e_value=6e-91) | Symbols: | Protein of unknown function (DUF567) | chr3:5348054-5349178 REVERSE LENGTH=220;; (*ITAG) Solyc03g116710.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:60053388-60054523 transcript_region:SL2.40ch03:60053388..60054523- functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00005286g0011.1 protein AED:0.12 eAED:0.12 QI:350|1|1|1|1|1|2|219|87 NbS00005286g0010.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|0.8|0.83|6|0|588; (*GB) gi|147798263|emb|CAN63457.1| (e_value=0.0) hypothetical protein VITISV_008241 [Vitis vinifera];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=0.0) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.1 (e_value=0.0) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22797953 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00005286g0013.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.5|0.83|1|1|6|0|225; (*GB) gi|255555799|ref|XP_002518935.1| (e_value=1e-152) Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis];; (*SWP) sp|Q9MAP8|B3GT6_ARATH (e_value=9e-146) Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1;; (*TAIR) AT1G32930.1 (e_value=6e-147) | Symbols: | Galactosyltransferase family protein | chr1:11931980-11934399 REVERSE LENGTH=399;; (*ITAG) Solyc11g013490.1.1 (e_value=7e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6543160-6549507 transcript_region:SL2.40ch11:6543160..6549507+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00005286g0012.1 protein AED:0.23 eAED:0.23 QI:705|1|0.83|1|1|1|6|0|397; (*GB) gi|225426534|ref|XP_002278777.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247984 isoform 1 [Vitis vinifera];; (*TAIR) AT1G64720.1 (e_value=7e-162) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc08g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62986084-62991290 transcript_region:SL2.40ch08:62986084..62991290- functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00060962g0004.1 protein AED:0.23 eAED:0.23 QI:76|0.33|0.25|1|1|1|4|0|160; (*GB) gi|30686639|ref|NP_850625.1| (e_value=1e-39) Imidazoleglycerol-phosphate dehydratase 1 [Arabidopsis thaliana];; (*SWP) sp|P34047|HIS7A_ARATH (e_value=3e-41) Imidazoleglycerol-phosphate dehydratase 1 OS=Arabidopsis thaliana GN=At3g22425 PE=1 SV=1;; (*TAIR) AT3G22425.2 (e_value=3e-42) | Symbols: IGPD | imidazoleglycerol-phosphate dehydratase | chr3:7951110-7952853 FORWARD LENGTH=270;; (*ITAG) Solyc09g076020.2.1 (e_value=2e-64) genomic_reference:SL2.40ch09 gene_region:63204638-63210368 transcript_region:SL2.40ch09:63204638..63210368+ go_terms:GO:0004424 functional_description:"Imidazoleglycerol-phosphate dehydratase (AHRD V1 **** B9RTS0_RICCO); contains Interpro domain(s) IPR000807 Imidazole glycerol-phosphate dehydratase "; GO:0004424 NbS00017031g0004.1 protein AED:0.12 eAED:0.12 QI:225|0.83|0.71|1|0.16|0.28|7|307|268; (*GB) gi|297741277|emb|CBI32408.3| (e_value=3e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJK3|LAG12_ARATH (e_value=3e-111) LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1;; (*TAIR) AT3G19260.1 (e_value=3e-112) | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 | chr3:6669448-6671257 REVERSE LENGTH=296;; (*ITAG) Solyc01g108230.2.1 (e_value=1e-146) genomic_reference:SL2.40ch01 gene_region:87342405-87350641 transcript_region:SL2.40ch01:87342405..87350641+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00035312g0005.1 protein AED:0.28 eAED:0.28 QI:134|0.75|0.8|1|0.75|0.6|5|180|268; (*GB) gi|71143481|gb|AAZ23955.1| (e_value=1e-101) GDSL-lipase 1 [Capsicum annuum];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=8e-84) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=6e-85) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071620.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:35594738-35596912 transcript_region:SL2.40ch02:35594738..35596912+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00060477g0004.1 protein AED:0.30 eAED:0.32 QI:0|0.33|0.14|1|0.33|0.28|7|0|819; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=4e-166) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*TAIR) AT5G42940.1 (e_value=3e-51) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc04g078680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60972448-60976501 transcript_region:SL2.40ch04:60972448..60976501+ go_terms:GO:0031177,GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0031177,GO:0008270 NbS00058025g0002.1 protein AED:0.63 eAED:0.63 QI:0|0.5|0.2|0.8|1|1|5|0|348; (*GB) gi|255578147|ref|XP_002529943.1| (e_value=6e-97) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G07990.1 (e_value=7e-40) | Symbols: | SIT4 phosphatase-associated family protein | chr1:2477413-2482898 FORWARD LENGTH=802;; (*ITAG) Solyc11g069490.1.1 (e_value=1e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51168203-51179394 transcript_region:SL2.40ch11:51168203..51179394+ functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 *-*- SAPS3_CHICK); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00007058g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|605; (*GB) gi|359486383|ref|XP_002273437.2| (e_value=8e-175) PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Vitis vinifera];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=2e-114) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=8e-158) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc06g051010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:30593637-30595409 transcript_region:SL2.40ch06:30593637..30595409- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00038818g0001.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|1|1|3|0|664; (*GB) gi|302398721|gb|ADL36655.1| (e_value=0.0) C3HL domain class transcription factor [Malus x domestica];; (*SWP) sp|P93755|C3H30_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc10g080260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60917085-60919178 transcript_region:SL2.40ch10:60917085..60919178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00056913g0001.1 protein AED:0.23 eAED:0.23 QI:435|1|1|1|0.46|0.5|16|1482|272; (*GB) gi|255557731|ref|XP_002519895.1| (e_value=2e-97) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|C0LGL9|FEI2_ARATH (e_value=3e-85) LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1;; (*TAIR) AT2G35620.2 (e_value=2e-86) | Symbols: FEI2 | Leucine-rich repeat protein kinase family protein | chr2:14961187-14964640 REVERSE LENGTH=589;; (*ITAG) Solyc08g074760.2.1 (e_value=6e-139) genomic_reference:SL2.40ch08 gene_region:56067158-56077961 transcript_region:SL2.40ch08:56067158..56077961+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001425g0010.1 protein AED:0.15 eAED:0.15 QI:220|1|1|1|1|1|9|378|530; (*GB) gi|255585735|ref|XP_002533549.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT3G52870.1 (e_value=0.0) | Symbols: | IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456;; (*ITAG) Solyc09g009770.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3250283-3254099 transcript_region:SL2.40ch09:3250283..3254099- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **** B6SL12_MAIZE)"; GO:0005516 NbS00001425g0011.1 protein AED:0.15 eAED:0.26 QI:0|0|0|1|1|1|2|223|132; (*GB) gi|255575625|ref|XP_002528712.1| (e_value=6e-53) carboxylic ester hydrolase, putative [Ricinus communis];; (*SWP) sp|Q9LZS7|GDL71_ARATH (e_value=2e-47) GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1;; (*TAIR) AT5G03610.1 (e_value=2e-48) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359;; (*ITAG) Solyc09g009700.2.1 (e_value=1e-68) genomic_reference:SL2.40ch09 gene_region:3088430-3096264 transcript_region:SL2.40ch09:3088430..3096264+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g03610 (AHRD V1 **** GDL71_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00001425g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|255585725|ref|XP_002533544.1| (e_value=2e-110) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|P85191|CP450_HELAN (e_value=2e-65) Cytochrome P450 (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT2G27690.1 (e_value=3e-90) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc10g083400.1.1 (e_value=5e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62546111-62547604 transcript_region:SL2.40ch10:62546111..62547604- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00036496g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.33|1|1|3|0|117; (*ITAG) Solyc12g015920.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5929201-5930450 transcript_region:SL2.40ch12:5929201..5930450+ functional_description:"ATFP4 (AHRD V1 *-*- B6UDP3_MAIZE)"; NbS00022056g0008.1 protein AED:0.44 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|84; (*GB) gi|107953720|gb|ABF85695.1| (e_value=1e-20) potassium channel [Nicotiana rustica];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=7e-15) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=5e-16) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00022056g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|255558288|ref|XP_002520171.1| (e_value=0.0) ER glycerol-phosphate acyltransferase [Ricinus communis];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=1e-174) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=1e-175) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc04g005840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:538803-541051 transcript_region:SL2.40ch04:538803..541051+ go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00022056g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|224091505|ref|XP_002309276.1| (e_value=6e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XF03|GPAT8_ARATH (e_value=1e-99) Probable glycerol-3-phosphate acyltransferase 8 OS=Arabidopsis thaliana GN=GPAT8 PE=2 SV=1;; (*TAIR) AT4G00400.1 (e_value=8e-101) | Symbols: GPAT8, AtGPAT8 | glycerol-3-phosphate acyltransferase 8 | chr4:174312-176734 REVERSE LENGTH=500;; (*ITAG) Solyc04g005840.1.1 (e_value=3e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:538803-541051 transcript_region:SL2.40ch04:538803..541051+ go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00018743g0009.1 protein AED:0.00 eAED:0.00 QI:192|1|1|1|0.5|0.33|3|2276|71; (*GB) gi|28188707|gb|AAN46279.1| (e_value=8e-28) unknown protein [Arabidopsis thaliana];; (*TAIR) AT2G04410.1 (e_value=3e-30) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73;; (*ITAG) Solyc07g045340.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00018743g0012.1 protein AED:0.16 eAED:0.16 QI:156|0.85|0.86|1|0.64|0.66|15|321|407; (*GB) gi|53854350|gb|AAU95618.1| (e_value=0.0) cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum];; (*SWP) sp|Q8S4Y1|THIC1_ARATH (e_value=0.0) Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1;; (*TAIR) AT5G48230.2 (e_value=0.0) | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolase 2 | chr5:19552570-19555122 REVERSE LENGTH=403;; (*ITAG) Solyc05g017760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:18312063-18317108 transcript_region:SL2.40ch05:18312063..18317108+ go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase (AHRD V1 **** D9U856_9LAMI); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00051601g0003.1 protein AED:0.30 eAED:0.46 QI:322|0|0.5|1|0|0|2|86|27 NbS00023856g0008.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.8|0.8|0|0.2|5|440|190 NbS00026892g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|224111766|ref|XP_002315971.1| (e_value=8e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LI84|CML16_ARATH (e_value=7e-69) Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=2;; (*TAIR) AT3G25600.1 (e_value=5e-70) | Symbols: | Calcium-binding EF-hand family protein | chr3:9307367-9307852 FORWARD LENGTH=161;; (*ITAG) Solyc01g010020.2.1 (e_value=2e-87) genomic_reference:SL2.40ch01 gene_region:4657174-4658216 transcript_region:SL2.40ch01:4657174..4658216- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6SJJ2_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00010372g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.88|0.88|0.87|0.88|9|0|305; (*GB) gi|111035808|emb|CAH04306.1| (e_value=0.0) putative quinolinate phosphirobosyltransferase [Nicotiana tabacum];; (*SWP) sp|P77938|NADC_RHORU (e_value=2e-50) Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1;; (*TAIR) AT2G01350.1 (e_value=4e-157) | Symbols: QPT | quinolinate phoshoribosyltransferase | chr2:165332-167209 REVERSE LENGTH=348;; (*ITAG) Solyc05g008180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2571445-2575572 transcript_region:SL2.40ch05:2571445..2575572+ go_terms:GO:0004514,GO:0042803 functional_description:"Nicotinate-nucleotide pyrophosphorylase (AHRD V1 **** B9SJ41_RICCO); contains Interpro domain(s) IPR004393 Nicotinate-nucleotide pyrophosphorylase "; GO:0004514,GO:0042803 NbS00010372g0106.1 protein AED:0.26 eAED:0.28 QI:0|0.77|0.8|1|0.88|0.8|10|328|337 NbS00016273g0013.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|7|448|400; (*GB) gi|359495902|ref|XP_002272590.2| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 3, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9XGA0|KPRS3_SPIOL (e_value=0.0) Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1;; (*TAIR) AT1G10700.1 (e_value=0.0) | Symbols: PRS3 | phosphoribosyl pyrophosphate (PRPP) synthase 3 | chr1:3554157-3556274 FORWARD LENGTH=411;; (*ITAG) Solyc04g039620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:29665590-29682288 transcript_region:SL2.40ch04:29665590..29682288+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- B6SK13_MAIZE); contains Interpro domain(s) IPR000836 Phosphoribosyltransferase "; GO:0042803 NbS00016273g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.37|0.33|0.88|1|1|9|0|335; (*GB) gi|356526769|ref|XP_003531989.1| (e_value=2e-146) PREDICTED: anthranilate phosphoribosyltransferase-like [Glycine max];; (*TAIR) AT1G70570.1 (e_value=2e-129) | Symbols: | anthranilate phosphoribosyltransferase, putative | chr1:26608719-26612062 FORWARD LENGTH=595;; (*ITAG) Solyc04g025540.2.1 (e_value=2e-180) genomic_reference:SL2.40ch04 gene_region:21409249-21419957 transcript_region:SL2.40ch04:21409249..21419957+ go_terms:GO:0004048 functional_description:"Anthranilate phosphoribosyltransferase-like protein (AHRD V1 *-** Q3SM27_THIDA); contains Interpro domain(s) IPR000312 Glycosyl transferase, family 3 "; GO:0004048 NbS00057968g0006.1 protein AED:0.24 eAED:0.24 QI:171|0.5|0.33|0.66|1|0.66|3|0|246; (*GB) gi|225456240|ref|XP_002279279.1| (e_value=5e-97) PREDICTED: myb-related protein B [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=8e-39) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G17950.1 (e_value=1e-82) | Symbols: ATMYB52, BW52, MYB52 | myb domain protein 52 | chr1:6177764-6179063 FORWARD LENGTH=249;; (*ITAG) Solyc04g064540.2.1 (e_value=1e-68) genomic_reference:SL2.40ch04 gene_region:54812889-54815114 transcript_region:SL2.40ch04:54812889..54815114- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- B9I4W4_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00012131g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|525; (*GB) gi|22087131|gb|AAM90848.1|AF481952_1 (e_value=0.0) hairy meristem [Petunia x hybrida];; (*SWP) sp|O81316|SCL6_ARATH (e_value=3e-55) Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SCL6 PE=1 SV=1;; (*TAIR) AT4G00150.1 (e_value=3e-56) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558;; (*ITAG) Solyc08g078800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59683241-59684665 transcript_region:SL2.40ch08:59683241..59684665- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GVG4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00049254g0001.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|255547782|ref|XP_002514948.1| (e_value=4e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G67540.2 (e_value=1e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:25311496-25312351 REVERSE LENGTH=255;; (*ITAG) Solyc04g045390.1.1 (e_value=6e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:31842934-31843677 transcript_region:SL2.40ch04:31842934..31843677+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034555g0009.1 protein AED:0.11 eAED:0.11 QI:22|0.75|0.8|1|0.75|0.8|5|0|346; (*GB) gi|225443389|ref|XP_002266915.1| (e_value=2e-130) PREDICTED: GDSL esterase/lipase At1g29670 [Vitis vinifera];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=4e-109) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=3e-110) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35660897-35664118 transcript_region:SL2.40ch02:35660897..35664118+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00034555g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.25|1|1|1|4|0|248; (*GB) gi|363807304|ref|NP_001242366.1| (e_value=4e-34) uncharacterized protein LOC100800635 precursor [Glycine max];; (*SWP) sp|Q9C7N5|GDL14_ARATH (e_value=2e-30) GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1;; (*TAIR) AT1G29660.1 (e_value=1e-31) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10371955-10373624 FORWARD LENGTH=364;; (*ITAG) Solyc02g071700.2.1 (e_value=7e-68) genomic_reference:SL2.40ch02 gene_region:35644262-35647481 transcript_region:SL2.40ch02:35644262..35647481+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00034555g0010.1 protein AED:0.17 eAED:0.17 QI:73|0.33|0.75|1|0.66|0.5|4|213|135; (*GB) gi|387940592|gb|AFK13159.1| (e_value=5e-51) agamous [Nicotiana benthamiana];; (*SWP) sp|Q43585|AG_TOBAC (e_value=2e-45) Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1;; (*TAIR) AT4G18960.2 (e_value=6e-22) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10384041-10388272 FORWARD LENGTH=238;; (*ITAG) Solyc02g071730.2.1 (e_value=7e-41) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00009025g0012.1 protein AED:0.03 eAED:0.03 QI:371|1|0.5|1|1|1|2|0|474; (*GB) gi|37223500|gb|AAQ90287.1| (e_value=0.0) beta-1,3-glucanase, acidic [Coffea arabica];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT1G64760.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24054220-24056194 REVERSE LENGTH=481;; (*ITAG) Solyc12g019890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:12107524-12110521 transcript_region:SL2.40ch12:12107524..12110521- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00009025g0015.1 protein AED:0.15 eAED:0.15 QI:55|0.95|0.91|1|0.78|0.79|24|125|739; (*GB) gi|302142164|emb|CBI19367.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9R1C7|PR40A_MOUSE (e_value=9e-38) Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1;; (*TAIR) AT1G44910.2 (e_value=9e-169) | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | chr1:16975930-16982647 FORWARD LENGTH=926;; (*ITAG) Solyc11g044340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35464518-35474836 transcript_region:SL2.40ch11:35464518..35474836- go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 **-- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00009025g0010.1 protein AED:0.25 eAED:0.26 QI:259|0.75|0.8|1|0.5|0.6|5|0|263; (*GB) gi|359492532|ref|XP_002283496.2| (e_value=4e-17) PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis vinifera];; (*ITAG) Solyc11g044350.1.1 (e_value=2e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35477781-35484652 transcript_region:SL2.40ch11:35477781..35484652- go_terms:GO:0005515 functional_description:"WW domain containing adaptor with coiled-coil (AHRD V1 *-*- Q5U4Q0_XENTR); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00009025g0013.1 protein AED:0.30 eAED:0.31 QI:0|0.66|0.25|1|1|0.75|4|0|189; (*GB) gi|225468200|ref|XP_002274349.1| (e_value=1e-59) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q8DKR7|DNAJ_THEEB (e_value=9e-31) Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2;; (*TAIR) AT2G22360.1 (e_value=2e-58) | Symbols: | DNAJ heat shock family protein | chr2:9498162-9500459 FORWARD LENGTH=442;; (*ITAG) Solyc01g105340.2.1 (e_value=3e-64) genomic_reference:SL2.40ch01 gene_region:85301588-85307119 transcript_region:SL2.40ch01:85301588..85307119+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00011204g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.69|0.92|0.66|0.69|13|0|604; (*GB) gi|193290704|gb|ACF17660.1| (e_value=0.0) putative isopropylmalate synthase [Capsicum annuum];; (*SWP) sp|O04974|LEU1B_SOLPN (e_value=0.0) 2-isopropylmalate synthase B OS=Solanum pennellii GN=IPMSB PE=2 SV=1;; (*TAIR) AT1G74040.1 (e_value=0.0) | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631;; (*ITAG) Solyc06g053400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32654699-32664611 transcript_region:SL2.40ch06:32654699..32664611+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase "; GO:0003852 NbS00011204g0007.1 protein AED:0.40 eAED:0.40 QI:69|1|1|1|1|1|2|354|63; (*ITAG) Solyc06g053430.2.1 (e_value=3e-25) genomic_reference:SL2.40ch06 gene_region:32694183-32700352 transcript_region:SL2.40ch06:32694183..32700352+ functional_description:"selenoprotein (AHRD V1 ***- B0WAC9_CULQU); contains Interpro domain(s) IPR014912 Sep15/SelM redox "; NbS00013293g0007.1 protein AED:0.03 eAED:0.03 QI:627|1|1|1|1|1|5|285|342; (*GB) gi|225426649|ref|XP_002274756.1| (e_value=6e-105) PREDICTED: uncharacterized protein LOC100244375 [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=2e-91) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc08g079630.2.1 (e_value=7e-143) genomic_reference:SL2.40ch08 gene_region:60275702-60280510 transcript_region:SL2.40ch08:60275702..60280510- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00013293g0010.1 protein AED:0.38 eAED:0.38 QI:0|1|0.88|1|0.87|0.88|9|174|322; (*GB) gi|225470285|ref|XP_002266380.1| (e_value=2e-161) PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XJ36|CLPR2_ARATH (e_value=7e-155) ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1;; (*TAIR) AT1G12410.1 (e_value=5e-156) | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteolytic subunit 2 | chr1:4223099-4224954 FORWARD LENGTH=279;; (*ITAG) Solyc08g079620.2.1 (e_value=4e-180) genomic_reference:SL2.40ch08 gene_region:60269439-60274214 transcript_region:SL2.40ch08:60269439..60274214+ go_terms:GO:0005515,GO:0004176 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 **** A5ADV7_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515,GO:0004176 NbS00014536g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|481; (*GB) gi|147862319|emb|CAN83589.1| (e_value=0.0) hypothetical protein VITISV_022074 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=5e-112) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G58950.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525;; (*ITAG) Solyc03g006400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:996867-999265 transcript_region:SL2.40ch03:996867..999265- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q39886_SOYBN); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468 NbS00027996g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|42|159; (*GB) gi|8272628|gb|AAF74287.1|AF261775_1 (e_value=1e-92) ORFX [Solanum pennellii];; (*SWP) sp|B6TZ45|CNR1_MAIZE (e_value=3e-56) Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1;; (*TAIR) AT1G14870.1 (e_value=5e-54) | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152;; (*ITAG) Solyc02g090730.2.1 (e_value=3e-95) genomic_reference:SL2.40ch02 gene_region:46830407-46831197 transcript_region:SL2.40ch02:46830407..46831197+ functional_description:"Cell number regulator 1 (AHRD V1 **-- B6TZ45_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00033111g0004.1 protein AED:0.04 eAED:0.05 QI:0|0.4|0.16|1|0.6|0.33|6|0|841; (*GB) gi|224066321|ref|XP_002302082.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G63430.1 (e_value=5e-53) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:23420414-23422201 FORWARD LENGTH=540;; (*ITAG) Solyc07g008670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3613044-3616083 transcript_region:SL2.40ch07:3613044..3616083- functional_description:"AT1G74160 protein (Fragment) (AHRD V1 *-*- B9DHP4_ARATH)"; NbS00045557g0003.1 protein AED:0.12 eAED:0.12 QI:202|1|1|1|1|1|4|454|147; (*GB) gi|255559871|ref|XP_002520954.1| (e_value=6e-76) calmodulin, putative [Ricinus communis];; (*SWP) sp|P93171|CALM_HELAN (e_value=5e-67) Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3;; (*TAIR) AT3G43810.1 (e_value=2e-67) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc01g105630.2.1 (e_value=7e-96) genomic_reference:SL2.40ch01 gene_region:85497235-85498101 transcript_region:SL2.40ch01:85497235..85498101+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00022648g0013.1 protein AED:0.08 eAED:0.09 QI:0|0.53|0.42|0.85|0.76|0.78|14|0|1821; (*GB) gi|359480861|ref|XP_002275681.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247348 [Vitis vinifera];; (*TAIR) AT4G39420.2 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18339731-18354701 FORWARD LENGTH=3184;; (*ITAG) Solyc04g051550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:49986611-49996666 transcript_region:SL2.40ch04:49986611..49996666+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022648g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.92|0.71|0.92|0.92|1|14|0|1527; (*GB) gi|296082526|emb|CBI21531.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55GD2|Y8328_DICDI (e_value=1e-22) Protein DDB_G0268328 OS=Dictyostelium discoideum GN=DDB_G0268328 PE=4 SV=1;; (*TAIR) AT4G39420.1 (e_value=0.0) | Symbols: | unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:18339731-18354701 FORWARD LENGTH=2513;; (*ITAG) Solyc04g051570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50007678-50019459 transcript_region:SL2.40ch04:50007678..50019459+ functional_description:"AT4G39450-like protein (Fragment) (AHRD V1 *--- D6PRI6_9BRAS)"; NbS00022648g0015.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|64; (*GB) gi|388890583|gb|AFK80345.1| (e_value=6e-18) chromomethylase 3 [Nicotiana benthamiana];; (*SWP) sp|Q9AXT8|CMT1_MAIZE (e_value=5e-16) DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1;; (*TAIR) AT1G69770.1 (e_value=6e-16) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839;; (*ITAG) Solyc01g006100.2.1 (e_value=7e-18) genomic_reference:SL2.40ch01 gene_region:756827-764851 transcript_region:SL2.40ch01:756827..764851- go_terms:GO:0008017,GO:0045545 functional_description:"Cytosine-specific methyltransferase (AHRD V1 *-*- B4XTS9_ELAGV); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0008017,GO:0045545 NbS00028065g0009.1 protein AED:0.06 eAED:0.06 QI:132|1|1|1|0.93|0.87|16|219|998; (*GB) gi|359482456|ref|XP_002271838.2| (e_value=0.0) PREDICTED: CCAAT/enhancer-binding protein zeta-like [Vitis vinifera];; (*SWP) sp|Q03701|CEBPZ_HUMAN (e_value=1e-107) CCAAT/enhancer-binding protein zeta OS=Homo sapiens GN=CEBPZ PE=1 SV=3;; (*TAIR) AT1G72440.1 (e_value=0.0) | Symbols: EDA25, SWA2 | CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043;; (*ITAG) Solyc03g123530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64408487-64419085 transcript_region:SL2.40ch03:64408487..64419085+ go_terms:GO:0005515,GO:0003677 functional_description:"CCAAT-box-binding transcription factor-like protein (AHRD V1 **** Q6YU01_ORYSJ); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; GO:0005515,GO:0003677 NbS00028065g0011.1 protein AED:0.14 eAED:0.14 QI:295|0.37|0.44|1|0.37|0.55|9|0|309; (*GB) gi|356545969|ref|XP_003541405.1| (e_value=3e-108) PREDICTED: serine/threonine-protein kinase Aurora-3-like [Glycine max];; (*SWP) sp|O64629|AUR3_ARATH (e_value=9e-99) Serine/threonine-protein kinase Aurora-3 OS=Arabidopsis thaliana GN=AUR3 PE=2 SV=1;; (*TAIR) AT2G45490.1 (e_value=7e-100) | Symbols: AtAUR3, AUR3 | ataurora3 | chr2:18747658-18749044 REVERSE LENGTH=288;; (*ITAG) Solyc04g009330.2.1 (e_value=2e-115) genomic_reference:SL2.40ch04 gene_region:2772793-2776023 transcript_region:SL2.40ch04:2772793..2776023+ go_terms:GO:0004713 functional_description:"Serine/threonine-protein kinase 12 (AHRD V1 **** B6SI45_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004713 NbS00028065g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|115; (*ITAG) Solyc08g016100.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:6706762-6707307 transcript_region:SL2.40ch08:6706762..6707307- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00028065g0010.1 protein AED:0.45 eAED:0.52 QI:0|0|0|1|0|0|2|0|43; (*ITAG) Solyc04g007330.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00041481g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.7|1|0.88|0.8|10|387|995; (*GB) gi|225424679|ref|XP_002264457.1| (e_value=2e-122) PREDICTED: uncharacterized protein LOC100263874 [Vitis vinifera];; (*SWP) sp|P49756|RBM25_HUMAN (e_value=2e-24) RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3;; (*TAIR) AT1G60200.1 (e_value=2e-82) | Symbols: | splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein | chr1:22200882-22205241 REVERSE LENGTH=899;; (*ITAG) Solyc05g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:433869-439585 transcript_region:SL2.40ch05:433869..439585- go_terms:GO:0003676,GO:0000166,GO:0006397 functional_description:"RNA-binding protein 25 (AHRD V1 *--- RBM25_HUMAN); contains Interpro domain(s) IPR002483 Splicing factor PWI "; GO:0003676,GO:0000166,GO:0006397 NbS00016516g0005.1 protein AED:0.66 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|162 NbS00016516g0007.1 protein AED:0.30 eAED:0.56 QI:12|0|0|1|0|0|2|0|85 NbS00013372g0003.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|275; (*GB) gi|224092460|ref|XP_002309619.1| (e_value=2e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT1G64870.1 (e_value=1e-69) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831 FORWARD LENGTH=304;; (*ITAG) Solyc12g020130.1.1 (e_value=6e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14136924-14137790 transcript_region:SL2.40ch12:14136924..14137790+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002513g0010.1 protein AED:0.00 eAED:0.00 QI:126|1|1|1|1|1|3|236|371; (*GB) gi|296083959|emb|CBI24347.3| (e_value=5e-137) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LFJ9|GLIP7_ARATH (e_value=2e-38) GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1;; (*TAIR) AT4G10950.1 (e_value=2e-64) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc11g072040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52409893-52412521 transcript_region:SL2.40ch11:52409893..52412521- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00002513g0002.1 protein AED:0.27 eAED:0.28 QI:0|0|0.5|1|0|0.5|2|195|393; (*GB) gi|255561238|ref|XP_002521630.1| (e_value=0.0) F-box and wd40 domain protein, putative [Ricinus communis];; (*SWP) sp|Q94AD8|FBW3_ARATH (e_value=1e-173) F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1;; (*TAIR) AT5G21040.2 (e_value=8e-175) | Symbols: FBX2 | F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539;; (*ITAG) Solyc11g072050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52413928-52415595 transcript_region:SL2.40ch11:52413928..52415595- functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND05_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002513g0006.1 protein AED:0.37 eAED:0.38 QI:235|1|0.5|1|0|0|2|0|192; (*GB) gi|224102909|ref|XP_002312850.1| (e_value=4e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AD8|FBW3_ARATH (e_value=3e-47) F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1;; (*TAIR) AT5G21040.2 (e_value=2e-48) | Symbols: FBX2 | F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539;; (*ITAG) Solyc11g072050.1.1 (e_value=1e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52413928-52415595 transcript_region:SL2.40ch11:52413928..52415595- functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND05_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00016119g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|480; (*GB) gi|255563602|ref|XP_002522803.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q94BZ5|HSFA5_ARATH (e_value=1e-165) Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1;; (*TAIR) AT4G13980.1 (e_value=9e-167) | Symbols: AT-HSFA5, HSFA5 | winged-helix DNA-binding transcription factor family protein | chr4:8077519-8079247 REVERSE LENGTH=466;; (*ITAG) Solyc12g098520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64340677-64344407 transcript_region:SL2.40ch12:64340677..64344407- go_terms:GO:0005634 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00016119g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|175; (*GB) gi|48766856|gb|AAR00325.2| (e_value=1e-76) rapid alkalinization factor 1 [Solanum chacoense];; (*TAIR) AT4G13950.1 (e_value=1e-25) | Symbols: RALFL31 | ralf-like 31 | chr4:8058268-8058609 REVERSE LENGTH=113;; (*ITAG) Solyc12g098510.1.1 (e_value=2e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64335241-64335699 transcript_region:SL2.40ch12:64335241..64335699- functional_description:"Rapid alkalinization factor 1 (AHRD V1 **-- Q6TF29_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; NbS00019249g0010.1 protein AED:0.04 eAED:0.06 QI:0|0.5|0.33|1|0|0|3|0|292; (*GB) gi|130369073|emb|CAJ90831.1| (e_value=5e-68) MYBPA1 protein [Vitis vinifera];; (*SWP) sp|Q38851|MYB6_ARATH (e_value=3e-62) Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1;; (*TAIR) AT2G16720.1 (e_value=1e-63) | Symbols: MYB7, ATMYB7, ATY49 | myb domain protein 7 | chr2:7255669-7256550 REVERSE LENGTH=269;; (*ITAG) Solyc08g082890.2.1 (e_value=5e-115) genomic_reference:SL2.40ch08 gene_region:62711830-62712999 transcript_region:SL2.40ch08:62711830..62712999- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- D0VYJ9_DIOKA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00019249g0005.1 protein AED:0.05 eAED:0.05 QI:199|0.85|0.87|1|1|1|8|151|345; (*GB) gi|356523777|ref|XP_003530511.1| (e_value=0.0) PREDICTED: WW domain-containing oxidoreductase-like isoform 1 [Glycine max];; (*SWP) sp|A2RVM0|TIC32_ARATH (e_value=4e-79) Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1;; (*TAIR) AT4G24050.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12497287-12499661 FORWARD LENGTH=332;; (*ITAG) Solyc08g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62700442-62703684 transcript_region:SL2.40ch08:62700442..62703684+ go_terms:GO:0046983 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00019249g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=6e-29) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=5e-25) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=2e-28) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc10g018320.1.1 (e_value=2e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7324490-7325110 transcript_region:SL2.40ch10:7324490..7325110+ go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00003711g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|347; (*GB) gi|350536069|ref|NP_001233972.1| (e_value=3e-158) jasmonic acid 2 [Solanum lycopersicum];; (*SWP) sp|Q93VY3|NAC72_ARATH (e_value=3e-128) NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1;; (*TAIR) AT4G27410.2 (e_value=2e-129) | Symbols: RD26, ANAC072 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr4:13707928-13709013 REVERSE LENGTH=297;; (*ITAG) Solyc07g063410.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63107439-63109016 transcript_region:SL2.40ch07:63107439..63109016+ go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HZY3_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00003711g0013.1 protein AED:0.43 eAED:0.75 QI:0|0|0|0.18|0.6|0.72|11|0|589; (*ITAG) Solyc06g008150.2.1 (e_value=2e-19) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001821g0112.1 protein AED:0.16 eAED:0.16 QI:89|0.81|0.66|0.91|0.45|0.58|12|0|560 NbS00001821g0104.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|78 NbS00001821g0113.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0|2|0|79 NbS00034204g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|240; (*GB) gi|21617998|gb|AAM67048.1| (e_value=7e-21) unknown [Arabidopsis thaliana];; (*TAIR) AT4G33985.1 (e_value=3e-23) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc01g108090.1.1 (e_value=7e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87211079-87212211 transcript_region:SL2.40ch01:87211079..87212211+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00034204g0017.1 protein AED:0.16 eAED:0.16 QI:0|1|0.87|1|0.71|0.62|8|754|457; (*GB) gi|225428824|ref|XP_002282255.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258951 [Vitis vinifera];; (*SWP) sp|Q5XJ36|PARK7_DANRE (e_value=8e-28) Protein DJ-1 OS=Danio rerio GN=park7 PE=2 SV=1;; (*TAIR) AT4G34020.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr4:16298553-16300897 REVERSE LENGTH=472;; (*ITAG) Solyc01g108070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87194831-87199861 transcript_region:SL2.40ch01:87194831..87199861+ go_terms:GO:0003723,GO:0051920 functional_description:"4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (AHRD V1 *-*- C5BNJ2_TERTT); contains Interpro domain(s) IPR006287 DJ-1 "; GO:0003723,GO:0051920 NbS00034204g0016.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.66|0.5|4|370|463; (*GB) gi|14571808|dbj|BAB61098.1| (e_value=2e-138) phi-2 [Nicotiana tabacum];; (*SWP) sp|Q9M7Q3|AI5L6_ARATH (e_value=3e-59) ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1;; (*TAIR) AT4G34000.2 (e_value=2e-60) | Symbols: ABF3, DPBF5 | abscisic acid responsive elements-binding factor 3 | chr4:16296008-16297971 FORWARD LENGTH=454;; (*ITAG) Solyc01g108080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87199941-87202306 transcript_region:SL2.40ch01:87199941..87202306- go_terms:GO:0016563 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0016563 NbS00034204g0015.1 protein AED:0.15 eAED:0.15 QI:158|0.88|0.9|1|0.77|0.8|10|251|577; (*GB) gi|224103609|ref|XP_002313120.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDD8|MCCB_ARATH (e_value=0.0) Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial OS=Arabidopsis thaliana GN=MCCB PE=2 SV=1;; (*TAIR) AT4G34030.1 (e_value=0.0) | Symbols: MCCB | 3-methylcrotonyl-CoA carboxylase | chr4:16301298-16303949 FORWARD LENGTH=587;; (*ITAG) Solyc01g108030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87162887-87167514 transcript_region:SL2.40ch01:87162887..87167514- go_terms:GO:0004485 functional_description:"Methylcrotonoyl-CoA carboxylase beta subunit (AHRD V1 **** D4XQJ0_ACIHA); contains Interpro domain(s) IPR000022 Carboxyl transferase "; GO:0004485 NbS00034204g0014.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|179; (*GB) gi|329750619|gb|AEC03325.1| (e_value=2e-56) mitochondrial thioredoxin 2 [Hevea brasiliensis];; (*SWP) sp|Q9SEU7|TRXM3_ARATH (e_value=2e-49) Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana GN=GAT1 PE=2 SV=2;; (*TAIR) AT2G15570.1 (e_value=1e-50) | Symbols: ATHM3, ATM3, TRX-M3, GAT1 | Thioredoxin superfamily protein | chr2:6791556-6792902 REVERSE LENGTH=173;; (*ITAG) Solyc01g108020.2.1 (e_value=3e-86) genomic_reference:SL2.40ch01 gene_region:87157183-87161875 transcript_region:SL2.40ch01:87157183..87161875- go_terms:GO:0008047 functional_description:"Thioredoxin m (AHRD V1 ***- B9HS17_POPTR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0008047 NbS00016535g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.66|1|0.8|0.66|6|144|250; (*GB) gi|225447296|ref|XP_002279761.1| (e_value=4e-105) PREDICTED: septum-promoting GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=1e-55) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.3 (e_value=3e-102) | Symbols: SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=292;; (*ITAG) Solyc12g005840.1.1 (e_value=2e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:474797-477406 transcript_region:SL2.40ch12:474797..477406- go_terms:GO:0007264,GO:0015031,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 *-*- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005622 NbS00018810g0008.1 protein AED:0.12 eAED:0.12 QI:241|1|1|1|0.66|0.6|10|329|250; (*GB) gi|161778778|gb|ABX79340.1| (e_value=5e-157) cytosolic ascorbate peroxidase [Vitis vinifera];; (*SWP) sp|Q1PER6|APX2_ARATH (e_value=3e-146) L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3;; (*TAIR) AT3G09640.2 (e_value=2e-147) | Symbols: APX2, APX1B | ascorbate peroxidase 2 | chr3:2956301-2958163 FORWARD LENGTH=251;; (*ITAG) Solyc09g007270.2.1 (e_value=1e-168) genomic_reference:SL2.40ch09 gene_region:865197-869322 transcript_region:SL2.40ch09:865197..869322+ go_terms:GO:0004130,GO:0005247 functional_description:"Ascorbate peroxidase (AHRD V1 **** B9VRH6_CITMA); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0004130,GO:0005247 NbS00018810g0007.1 protein AED:0.13 eAED:0.13 QI:151|1|1|1|1|1|10|375|475; (*GB) gi|255697190|emb|CAR92295.1| (e_value=0.0) relative to APETALA2 1 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|P47927|AP2_ARATH (e_value=5e-95) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT2G28550.3 (e_value=2e-98) | Symbols: RAP2.7 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=464;; (*ITAG) Solyc09g007260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:856629-859952 transcript_region:SL2.40ch09:856629..859952+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g79700 (AHRD V1 *--- AP2L3_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001300g0010.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0|0.75|0|0|4|0|196; (*GB) gi|147788942|emb|CAN64848.1| (e_value=2e-72) hypothetical protein VITISV_036158 [Vitis vinifera];; (*SWP) sp|P0A9P9|IDNO_ECOLI (e_value=2e-20) Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1;; (*TAIR) AT3G55290.2 (e_value=4e-58) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:20502653-20503730 FORWARD LENGTH=279;; (*ITAG) Solyc10g078360.1.1 (e_value=1e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59509321-59510895 transcript_region:SL2.40ch10:59509321..59510895- go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00001300g0005.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|183; (*ITAG) Solyc10g047880.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003881g0105.1 protein AED:0.02 eAED:0.02 QI:176|1|1|1|1|1|3|373|630 NbS00000795g0011.1 protein AED:0.22 eAED:0.26 QI:0|0.76|0.77|0.96|0.73|0.74|31|0|1739; (*GB) gi|255556695|ref|XP_002519381.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT5G49760.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20216679-20221052 FORWARD LENGTH=953;; (*ITAG) Solyc01g102700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83194913-83202439 transcript_region:SL2.40ch01:83194913..83202439+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000795g0008.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|1|1|2|0|425; (*GB) gi|224129542|ref|XP_002328742.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05390.1 (e_value=1e-73) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc10g052600.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00000795g0002.1 protein AED:0.16 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|224129542|ref|XP_002328742.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05390.1 (e_value=1e-85) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc10g052600.1.1 (e_value=2e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00058684g0004.1 protein AED:0.37 eAED:0.63 QI:0|0.2|0|1|0.6|0.66|6|0|292; (*GB) gi|225463157|ref|XP_002268154.1| (e_value=8e-51) PREDICTED: FYVE and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera];; (*TAIR) AT2G26210.1 (e_value=3e-32) | Symbols: | Ankyrin repeat family protein | chr2:11157654-11159016 FORWARD LENGTH=190;; (*ITAG) Solyc06g031680.2.1 (e_value=6e-50) genomic_reference:SL2.40ch06 gene_region:17306390-17314675 transcript_region:SL2.40ch06:17306390..17314675+ go_terms:GO:0008270 functional_description:"FYVE zinc finger family protein (AHRD V1 ***- B4FKR4_MAIZE); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0008270 NbS00031240g0001.1 protein AED:0.42 eAED:0.83 QI:0|0|0|1|1|1|2|0|81 NbS00059769g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|3|237|249; (*GB) gi|255562904|ref|XP_002522457.1| (e_value=5e-146) Alpha-expansin 1 precursor, putative [Ricinus communis];; (*SWP) sp|O80622|EXP15_ARATH (e_value=1e-134) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=9e-136) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc01g010890.2.1 (e_value=1e-142) genomic_reference:SL2.40ch01 gene_region:6344085-6349063 transcript_region:SL2.40ch01:6344085..6349063+ go_terms:GO:0005199 functional_description:"Expansin 2 (AHRD V1 ***- B1A2I4_9ROSI); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00012931g0001.1 protein AED:0.26 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|278; (*GB) gi|359481652|ref|XP_003632656.1| (e_value=2e-32) PREDICTED: uncharacterized protein LOC100854478 [Vitis vinifera];; (*ITAG) Solyc01g007190.2.1 (e_value=4e-87) genomic_reference:SL2.40ch01 gene_region:1770445-1771528 transcript_region:SL2.40ch01:1770445..1771528+ functional_description:"Unknown Protein (AHRD V1)"; NbS00062104g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|225431988|ref|XP_002279066.1| (e_value=1e-40) PREDICTED: calmodulin-like [Vitis vinifera];; (*TAIR) AT5G49480.1 (e_value=3e-35) | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 | chr5:20070812-20071294 FORWARD LENGTH=160;; (*ITAG) Solyc01g058720.2.1 (e_value=9e-54) genomic_reference:SL2.40ch01 gene_region:60821655-60822485 transcript_region:SL2.40ch01:60821655..60822485- go_terms:GO:0005509 functional_description:"NaCl-inducible Ca2+-binding protein (AHRD V1 **-* O22368_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00015099g0011.1 protein AED:0.12 eAED:0.12 QI:299|1|1|1|0.8|0.66|6|187|332; (*GB) gi|224130006|ref|XP_002320727.1| (e_value=1e-115) predicted protein [Populus trichocarpa];; (*TAIR) AT4G12080.1 (e_value=6e-82) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc01g091370.2.1 (e_value=4e-179) genomic_reference:SL2.40ch01 gene_region:76763370-76767771 transcript_region:SL2.40ch01:76763370..76767771- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00015099g0012.1 protein AED:0.23 eAED:0.26 QI:0|0.4|0.33|1|0.6|0.5|6|841|78 NbS00015099g0002.1 protein AED:0.44 eAED:0.49 QI:64|0.33|0.5|1|1|1|4|159|69; (*GB) gi|225453913|ref|XP_002279334.1| (e_value=2e-22) PREDICTED: protein cornichon homolog 4 [Vitis vinifera];; (*SWP) sp|Q84W04|CNIH4_ARATH (e_value=2e-20) Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1;; (*TAIR) AT1G12390.1 (e_value=1e-21) | Symbols: | Cornichon family protein | chr1:4220347-4221481 FORWARD LENGTH=137;; (*ITAG) Solyc05g051030.2.1 (e_value=1e-28) genomic_reference:SL2.40ch05 gene_region:60365819-60371552 transcript_region:SL2.40ch05:60365819..60371552+ go_terms:GO:0016971,GO:0005515 functional_description:"ER-derived vesicles protein ERV14 (AHRD V1 **-- B6T6Y8_MAIZE); contains Interpro domain(s) IPR003377 Cornichon "; GO:0016971,GO:0005515 NbS00006732g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.77|0.9|1|0.77|0.8|10|469|483; (*GB) gi|1568511|emb|CAA66487.1| (e_value=0.0) protein phosphatase 2A [Nicotiana tabacum];; (*SWP) sp|Q38950|2AAB_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2;; (*TAIR) AT3G25800.1 (e_value=0.0) | Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587;; (*ITAG) Solyc05g009600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3800023-3807291 transcript_region:SL2.40ch05:3800023..3807291+ go_terms:GO:0017018 functional_description:"Phosphatase 2A regulatory A subunit (AHRD V1 **** Q9S7C5_ORYSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017018 NbS00006732g0003.1 protein AED:0.33 eAED:0.73 QI:0|0|0|1|1|1|2|0|191; (*ITAG) Solyc01g017760.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006732g0006.1 protein AED:0.31 eAED:0.39 QI:0|0|0|1|1|1|2|0|170; (*GB) gi|82697961|gb|ABB89015.1| (e_value=3e-63) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=2e-49) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=1e-50) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc05g009610.1.1 (e_value=3e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3812036-3813073 transcript_region:SL2.40ch05:3812036..3813073- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIF8); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00058060g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.83|1|1|1|6|0|592; (*GB) gi|350535917|ref|NP_001234220.1| (e_value=0.0) auxin efflux facilitator SlPIN9 [Solanum lycopersicum];; (*SWP) sp|Q67UL3|PIN1C_ORYSJ (e_value=0.0) Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1;; (*TAIR) AT1G73590.1 (e_value=0.0) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622;; (*ITAG) Solyc10g078370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59518688-59521564 transcript_region:SL2.40ch10:59518688..59521564+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier (AHRD V1 ***- D6RT09_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0016021 NbS00027217g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|150 NbS00027217g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|147865633|emb|CAN83255.1| (e_value=2e-118) hypothetical protein VITISV_036981 [Vitis vinifera];; (*SWP) sp|O82199|C3H20_ARATH (e_value=2e-91) Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1;; (*TAIR) AT2G19810.1 (e_value=2e-92) | Symbols: | CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359;; (*ITAG) Solyc12g008660.1.1 (e_value=2e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2038195-2039412 transcript_region:SL2.40ch12:2038195..2039412+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 20 (AHRD V1 ***- C3H20_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00054825g0016.1 protein AED:0.05 eAED:0.08 QI:0|1|0.8|1|0.25|0.4|5|240|255; (*GB) gi|297738765|emb|CBI28010.3| (e_value=1e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82190|RDR3_ARATH (e_value=1e-11) Probable RNA-dependent RNA polymerase 3 OS=Arabidopsis thaliana GN=RDR3 PE=2 SV=2;; (*TAIR) AT2G19910.1 (e_value=7e-13) | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8595820-8600757 REVERSE LENGTH=992;; (*ITAG) Solyc06g051190.1.1 (e_value=8e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30875301-30879542 transcript_region:SL2.40ch06:30875301..30879542- functional_description:"RNA-dependent RNA polymerase family protein (AHRD V1 ***- D7L6F5_ARALY); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; NbS00054825g0010.1 protein AED:0.14 eAED:0.14 QI:205|0.85|0.75|1|0.71|0.87|8|366|529; (*GB) gi|255559959|ref|XP_002520998.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G06750.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2073882-2076350 FORWARD LENGTH=519;; (*ITAG) Solyc06g031670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:17255317-17259513 transcript_region:SL2.40ch06:17255317..17259513+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00054825g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.62|1|1|1|8|139|473; (*GB) gi|225445110|ref|XP_002280491.1| (e_value=2e-145) PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis vinifera];; (*SWP) sp|O82188|RDR5_ARATH (e_value=4e-113) Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2;; (*TAIR) AT2G19930.1 (e_value=3e-114) | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8607533-8612441 REVERSE LENGTH=977;; (*ITAG) Solyc06g051170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30850904-30862817 transcript_region:SL2.40ch06:30850904..30862817- functional_description:"RNA-dependent RNA polymerase family protein (AHRD V1 ***- D7L6F2_ARALY); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; NbS00054825g0011.1 protein AED:0.01 eAED:0.01 QI:128|1|1|1|1|1|2|277|112; (*GB) gi|357468207|ref|XP_003604388.1| (e_value=1e-19) EPIDERMAL PATTERNING FACTOR-like protein [Medicago truncatula];; (*ITAG) Solyc08g015940.2.1 (e_value=1e-55) genomic_reference:SL2.40ch08 gene_region:6283275-6284559 transcript_region:SL2.40ch08:6283275..6284559+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 6 (AHRD V1 *-*- EPFL6_ARATH)"; NbS00042350g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|101 NbS00007917g0008.1 protein AED:0.38 eAED:0.38 QI:13|1|0.87|1|0.57|0.37|8|0|274; (*GB) gi|359485357|ref|XP_002279346.2| (e_value=7e-111) PREDICTED: callose synthase 7-like [Vitis vinifera];; (*SWP) sp|Q9LYS6|CALS6_ARATH (e_value=1e-108) Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2;; (*TAIR) AT3G59100.1 (e_value=8e-110) | Symbols: ATGSL11, gsl11 | glucan synthase-like 11 | chr3:21843407-21853860 FORWARD LENGTH=1921;; (*ITAG) Solyc07g056260.2.1 (e_value=7e-157) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00025804g0008.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0|0|3|0|283; (*GB) gi|225450757|ref|XP_002279349.1| (e_value=1e-78) PREDICTED: acetylajmalan esterase [Vitis vinifera];; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=3e-65) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28580.1 (e_value=1e-62) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10044603-10046379 REVERSE LENGTH=390;; (*ITAG) Solyc12g017460.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00034639g0007.1 protein AED:0.17 eAED:0.21 QI:86|0.71|0.62|1|0.42|0.37|8|0|314; (*GB) gi|297746235|emb|CBI16291.3| (e_value=1e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SF29|SYP71_ARATH (e_value=2e-85) Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1;; (*TAIR) AT3G09740.1 (e_value=2e-86) | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989615-2991354 FORWARD LENGTH=266;; (*ITAG) Solyc11g069230.1.1 (e_value=2e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50949457-50952275 transcript_region:SL2.40ch11:50949457..50952275+ go_terms:GO:0016020 functional_description:"Syntaxin-71 (AHRD V1 ***- C0L7E7_ANNCH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00004361g0010.1 protein AED:0.20 eAED:0.20 QI:323|1|1|1|1|1|6|340|211; (*GB) gi|16755592|gb|AAL28022.1| (e_value=2e-136) small GTPase Rab2 [Nicotiana tabacum];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=6e-136) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=5e-137) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc12g011130.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3971227-3974056 transcript_region:SL2.40ch12:3971227..3974056- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00004361g0008.1 protein AED:0.25 eAED:0.25 QI:342|0.87|0.88|1|1|1|9|216|537; (*GB) gi|89089752|gb|ABD60582.1| (e_value=0.0) ADP-glucose pyrophosphorylase small subunit [Nicotiana tabacum];; (*SWP) sp|P23509|GLGS_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G48300.1 (e_value=0.0) | Symbols: ADG1, APS1 | ADP glucose pyrophosphorylase 1 | chr5:19570326-19572557 FORWARD LENGTH=520;; (*ITAG) Solyc07g056140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61312709-61317321 transcript_region:SL2.40ch07:61312709..61317321- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** D5L5Q9_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00004465g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|479; (*GB) gi|359478573|ref|XP_002279931.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265690 [Vitis vinifera];; (*TAIR) AT5G58960.3 (e_value=3e-174) | Symbols: GIL1 | Plant protein of unknown function (DUF641) | chr5:23806906-23808360 FORWARD LENGTH=484;; (*ITAG) Solyc02g083110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41207684-41209114 transcript_region:SL2.40ch02:41207684..41209114- functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAS0_9ROSI); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00011363g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|101 NbS00011363g0110.1 protein AED:0.10 eAED:0.10 QI:1153|0.88|0.9|1|0.88|0.9|10|251|838 NbS00011363g0109.1 protein AED:0.23 eAED:0.24 QI:569|0.9|0.90|1|0.5|0.54|11|566|356 NbS00011363g0108.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|76 NbS00053252g0008.1 protein AED:0.10 eAED:0.10 QI:89|0.75|0.8|1|0.75|0.8|5|271|346; (*GB) gi|296082012|emb|CBI21017.3| (e_value=3e-59) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11270.1 (e_value=4e-52) | Symbols: OCP3 | overexpressor of cationic peroxidase 3 | chr5:3595557-3597076 REVERSE LENGTH=354;; (*ITAG) Solyc08g061140.2.1 (e_value=1e-92) genomic_reference:SL2.40ch08 gene_region:43998956-44003572 transcript_region:SL2.40ch08:43998956..44003572- go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox transcription factor (ISS) (AHRD V1 *-*- Q018M5_OSTTA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00053252g0007.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|0|0|2|0|109; (*ITAG) Solyc01g073980.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00007550g0012.1 protein AED:0.09 eAED:0.09 QI:283|1|1|1|0.90|0.83|12|301|439; (*GB) gi|347361138|gb|AEO86797.1| (e_value=0.0) cyclin [Camellia sinensis];; (*SWP) sp|Q9SFW6|CCB24_ARATH (e_value=0.0) Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2;; (*TAIR) AT1G76310.1 (e_value=0.0) | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630199 REVERSE LENGTH=431;; (*ITAG) Solyc04g082430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63679120-63682268 transcript_region:SL2.40ch04:63679120..63682268- go_terms:GO:0004721,GO:0016538 functional_description:"B-like cyclin (AHRD V1 **** Q40337_MEDSA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00007550g0014.1 protein AED:0.17 eAED:0.17 QI:63|0.92|0.93|1|0.71|0.73|15|292|856; (*GB) gi|1169912|sp|P30924.2|GLGB_SOLTU (e_value=0.0) RecName: Full=1,4-alpha-glucan-branching enzyme; AltName: Full=Q-enzyme; AltName: Full=Starch-branching enzyme;; (*SWP) sp|P30924|GLGB_SOLTU (e_value=0.0) 1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2;; (*TAIR) AT5G03650.1 (e_value=0.0) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805;; (*ITAG) Solyc04g082400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63662213-63669892 transcript_region:SL2.40ch04:63662213..63669892- go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** Q08131_MANES); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00007550g0020.1 protein AED:0.20 eAED:0.20 QI:0|1|0.87|1|1|1|8|661|239; (*GB) gi|224086036|ref|XP_002307788.1| (e_value=3e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|O60762|DPM1_HUMAN (e_value=2e-96) Dolichol-phosphate mannosyltransferase OS=Homo sapiens GN=DPM1 PE=1 SV=1;; (*TAIR) AT1G20575.1 (e_value=6e-136) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:7126987-7128677 REVERSE LENGTH=246;; (*ITAG) Solyc04g082390.2.1 (e_value=1e-146) genomic_reference:SL2.40ch04 gene_region:63657534-63661669 transcript_region:SL2.40ch04:63657534..63661669- go_terms:GO:0004582 functional_description:"Dolichyl-phosphate beta-mannosyltransferase (AHRD V1 **** B8C1A1_THAPS); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0004582 NbS00007550g0018.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.75|1|0.72|0.75|12|0|793; (*GB) gi|297745547|emb|CBI40712.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEV3|Y2060_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1;; (*TAIR) AT2G30600.4 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr2:13037410-13041475 FORWARD LENGTH=809;; (*ITAG) Solyc04g082420.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63674635-63677697 transcript_region:SL2.40ch04:63674635..63677697- go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7LC69_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00007550g0021.1 protein AED:0.26 eAED:0.58 QI:140|0.33|0.5|0.75|0.66|0.25|4|0|188; (*GB) gi|224083266|ref|XP_002306974.1| (e_value=4e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42330.1 (e_value=2e-34) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16926672-16927370 FORWARD LENGTH=205;; (*ITAG) Solyc04g082380.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:63655461-63657278 transcript_region:SL2.40ch04:63655461..63657278+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010038g0003.1 protein AED:0.27 eAED:0.52 QI:0|0.66|0|1|1|1|4|0|202; (*GB) gi|225436460|ref|XP_002274821.1| (e_value=6e-92) PREDICTED: uncharacterized protein LOC100253409 [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=8e-76) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc11g066380.1.1 (e_value=1e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49235503-49238383 transcript_region:SL2.40ch11:49235503..49238383+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00003232g0001.1 protein AED:0.20 eAED:0.20 QI:45|0.66|0.42|1|1|1|7|0|948; (*GB) gi|225431954|ref|XP_002272609.1| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100258583 [Vitis vinifera];; (*TAIR) AT5G58040.1 (e_value=6e-17) | Symbols: ATFIP1[V], FIPS5, ATFIPS5, FIP1[V] | homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196;; (*ITAG) Solyc12g099280.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64816628-64825127 transcript_region:SL2.40ch12:64816628..64825127+ functional_description:"Pre-mRNA polyadenylation factor fip1 (AHRD V1 *-*- B6JX34_SCHJY); contains Interpro domain(s) IPR007854 Fip1 "; NbS00003232g0005.1 protein AED:0.48 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|143; (*ITAG) Solyc12g099300.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64836400-64837548 transcript_region:SL2.40ch12:64836400..64837548+ functional_description:"Fgenesh protein 60 (AHRD V1 ***- Q1ZY19_BETVU); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00003232g0016.1 protein AED:0.10 eAED:0.10 QI:173|0.85|0.8|1|0.92|0.86|15|423|608; (*GB) gi|225431946|ref|XP_002277743.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase 22A1 [Vitis vinifera];; (*SWP) sp|Q0WSF1|AL221_ARATH (e_value=0.0) Aldehyde dehydrogenase 22A1 OS=Arabidopsis thaliana GN=ALDH22A1 PE=2 SV=2;; (*TAIR) AT3G66658.2 (e_value=0.0) | Symbols: ALDH22A1 | aldehyde dehydrogenase 22A1 | chr3:2095341-2099013 REVERSE LENGTH=596;; (*ITAG) Solyc12g099290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64827822-64834745 transcript_region:SL2.40ch12:64827822..64834745- go_terms:GO:0005576,GO:0055114 functional_description:"Aldehyde dehydrogenase (AHRD V1 ***- A2Q2X1_MEDTR); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0005576,GO:0055114 NbS00003232g0017.1 protein AED:0.27 eAED:0.27 QI:346|1|0.8|1|1|1|5|410|301; (*GB) gi|225431934|ref|XP_002277394.1| (e_value=4e-162) PREDICTED: ubiquitin-conjugating enzyme E2 32 [Vitis vinifera];; (*SWP) sp|Q9LSP7|UBC32_ARATH (e_value=9e-136) Ubiquitin-conjugating enzyme E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1;; (*TAIR) AT3G17000.1 (e_value=7e-137) | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 | chr3:5797296-5799467 FORWARD LENGTH=309;; (*ITAG) Solyc12g099310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64838370-64841676 transcript_region:SL2.40ch12:64838370..64841676- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 31 (AHRD V1 ***- D7L699_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00003232g0105.1 protein AED:0.26 eAED:0.26 QI:211|0.90|0.86|1|0.80|0.86|22|0|806 NbS00003312g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.85|0.87|1|0.71|0.87|8|289|585; (*GB) gi|297739526|emb|CBI29708.3| (e_value=3e-130) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G58025.1 (e_value=7e-73) | Symbols: | DNA-binding bromodomain-containing protein | chr1:21458219-21461757 REVERSE LENGTH=572;; (*ITAG) Solyc01g103570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83902094-83910528 transcript_region:SL2.40ch01:83902094..83910528- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein-like (AHRD V1 *-** Q5VPG9_ORYSJ); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00003312g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|241; (*GB) gi|224122246|ref|XP_002318787.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55690.1 (e_value=9e-19) | Symbols: | MADS-box transcription factor family protein | chr5:22548790-22549623 REVERSE LENGTH=277;; (*ITAG) Solyc01g103550.1.1 (e_value=4e-99) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83894425-83895360 transcript_region:SL2.40ch01:83894425..83895360- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRN3_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00003312g0013.1 protein AED:0.11 eAED:0.11 QI:71|1|1|1|0.77|0.9|10|538|389; (*GB) gi|225448126|ref|XP_002263416.1| (e_value=0.0) PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera];; (*SWP) sp|Q98D55|TRUA_RHILO (e_value=1e-48) tRNA pseudouridine synthase A OS=Rhizobium loti (strain MAFF303099) GN=truA PE=3 SV=1;; (*TAIR) AT1G09800.1 (e_value=6e-169) | Symbols: | Pseudouridine synthase family protein | chr1:3177121-3180336 REVERSE LENGTH=372;; (*ITAG) Solyc01g103560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83896521-83901778 transcript_region:SL2.40ch01:83896521..83901778+ go_terms:GO:0009451 functional_description:"tRNA pseudouridine synthase A (AHRD V1 ***- D6ZZF1_STAND); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009451 NbS00003312g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.7|0.9|1|1|10|676|671; (*GB) gi|297739524|emb|CBI29706.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4R5D9|YTHD2_MACFA (e_value=2e-57) YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1;; (*TAIR) AT1G09810.1 (e_value=3e-98) | Symbols: ECT11 | evolutionarily conserved C-terminal region 11 | chr1:3181138-3183354 REVERSE LENGTH=470;; (*ITAG) Solyc01g103540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83887917-83893923 transcript_region:SL2.40ch01:83887917..83893923+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *-*- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00034477g0004.1 protein AED:0.08 eAED:0.10 QI:0|0.5|0.6|1|1|1|5|0|357; (*GB) gi|297733795|emb|CBI15042.3| (e_value=2e-108) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G62840.1 (e_value=2e-105) | Symbols: | Phosphoglycerate mutase family protein | chr5:25228296-25229672 REVERSE LENGTH=297;; (*ITAG) Solyc03g114250.2.1 (e_value=3e-124) genomic_reference:SL2.40ch03 gene_region:58333902-58335830 transcript_region:SL2.40ch03:58333902..58335830+ go_terms:GO:0003824 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 **-- B6TTB7_MAIZE); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003824 NbS00034477g0013.1 protein AED:0.21 eAED:0.26 QI:37|1|0.75|1|0|0|4|0|184; (*GB) gi|37050896|emb|CAE47557.1| (e_value=2e-91) seven-transmembrane-domain protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9FM10|SWET5_ARATH (e_value=3e-80) Bidirectional sugar transporter SWEET5 OS=Arabidopsis thaliana GN=SWEET5 PE=2 SV=2;; (*TAIR) AT5G62850.1 (e_value=2e-81) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc06g071400.2.1 (e_value=4e-94) genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00034477g0008.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.5|1|1|2|0|622; (*GB) gi|225457060|ref|XP_002279813.1| (e_value=0.0) PREDICTED: probable polygalacturonase non-catalytic subunit JP650-like [Vitis vinifera];; (*SWP) sp|P92990|JP650_ARATH (e_value=0.0) Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2;; (*TAIR) AT1G70370.2 (e_value=0.0) | Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626;; (*ITAG) Solyc03g114240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58327331-58329622 transcript_region:SL2.40ch03:58327331..58329622- go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- C1PI55_ARATH); contains Interpro domain(s) IPR004873 BURP "; GO:0004650 NbS00034477g0010.1 protein AED:0.30 eAED:0.30 QI:241|1|1|1|1|1|6|374|378; (*GB) gi|225457064|ref|XP_002283021.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase HT1-like [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-63) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50000.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:20342838-20345033 REVERSE LENGTH=385;; (*ITAG) Solyc03g114210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58256826-58261183 transcript_region:SL2.40ch03:58256826..58261183- go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00000867g0014.1 protein AED:0.02 eAED:0.02 QI:109|1|1|1|0.8|1|6|492|219; (*GB) gi|255539042|ref|XP_002510586.1| (e_value=2e-110) protein with unknown function [Ricinus communis];; (*SWP) sp|Q6GR35|F206A_XENLA (e_value=5e-27) Protein FAM206A OS=Xenopus laevis GN=fam206a PE=2 SV=1;; (*TAIR) AT1G75980.1 (e_value=4e-96) | Symbols: | Single hybrid motif superfamily protein | chr1:28522936-28524302 REVERSE LENGTH=225;; (*ITAG) Solyc04g081850.2.1 (e_value=2e-139) genomic_reference:SL2.40ch04 gene_region:63319244-63321839 transcript_region:SL2.40ch04:63319244..63321839- go_terms:GO:0005515 functional_description:"UPF0436 protein C9orf6 homolog (AHRD V1 ***- CI006_XENLA); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005515 NbS00000867g0016.1 protein AED:0.06 eAED:0.06 QI:0|0|0.33|1|0.5|0.66|3|0|229; (*GB) gi|4027893|gb|AAC96078.1| (e_value=5e-153) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q9LNU3|EXP11_ARATH (e_value=4e-107) Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1;; (*TAIR) AT1G20190.1 (e_value=3e-108) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc04g081870.2.1 (e_value=1e-139) genomic_reference:SL2.40ch04 gene_region:63328271-63330920 transcript_region:SL2.40ch04:63328271..63330920- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00000867g0017.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.25|1|0|0.25|4|0|278; (*GB) gi|91940084|gb|ABE66389.1| (e_value=5e-126) peroxidase [Striga asiatica];; (*SWP) sp|Q43872|PER64_ARATH (e_value=3e-114) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=2e-115) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc04g081860.2.1 (e_value=4e-164) genomic_reference:SL2.40ch04 gene_region:63322473-63325011 transcript_region:SL2.40ch04:63322473..63325011- go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q1PGA3_STRAF); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00000867g0011.1 protein AED:0.34 eAED:0.34 QI:171|0.9|0.90|1|0.7|0.63|11|450|270; (*GB) gi|359492084|ref|XP_002284740.2| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera];; (*TAIR) AT1G76010.1 (e_value=1e-52) | Symbols: | Alba DNA/RNA-binding protein | chr1:28528505-28530488 REVERSE LENGTH=350;; (*ITAG) Solyc04g081880.2.1 (e_value=4e-56) genomic_reference:SL2.40ch04 gene_region:63335224-63339615 transcript_region:SL2.40ch04:63335224..63339615- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_RAT); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00000867g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|458; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=0.0) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=8e-131) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT5G49690.1 (e_value=6e-69) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc04g081830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63313830-63315194 transcript_region:SL2.40ch04:63313830..63315194+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00000867g0019.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|334; (*GB) gi|224065749|ref|XP_002301952.1| (e_value=3e-99) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DYE5|U496K_ARATH (e_value=2e-70) UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2;; (*TAIR) AT1G20180.1 (e_value=2e-71) | Symbols: | Protein of unknown function (DUF677) | chr1:6996354-6997779 FORWARD LENGTH=390;; (*ITAG) Solyc04g081840.2.1 (e_value=5e-175) genomic_reference:SL2.40ch04 gene_region:63315552-63319148 transcript_region:SL2.40ch04:63315552..63319148+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00000867g0134.1 protein AED:0.12 eAED:0.12 QI:278|0.75|1|1|0.75|1|5|487|526 NbS00000867g0135.1 protein AED:0.13 eAED:0.13 QI:0|0.42|0.25|1|0.42|0.37|8|0|565 NbS00000867g0143.1 protein AED:0.23 eAED:0.24 QI:0|0.33|0.25|1|0.66|0.5|4|0|640 NbS00000867g0131.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|1|3|0|320 NbS00000867g0114.1 protein AED:0.32 eAED:0.32 QI:55|0.38|0.42|0.85|1|1|14|0|851 NbS00000867g0144.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|421 NbS00000867g0138.1 protein AED:0.41 eAED:0.41 QI:0|0.75|0.6|1|0.5|0.4|5|0|318 NbS00000867g0106.1 protein AED:0.38 eAED:0.62 QI:0|-1|0|1|-1|1|1|0|182 NbS00003042g0016.1 protein AED:0.13 eAED:0.21 QI:386|0.6|0.5|1|0.2|0.33|6|0|366; (*GB) gi|225468498|ref|XP_002270407.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 [Vitis vinifera];; (*SWP) sp|Q8LAM0|UBP4_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2;; (*TAIR) AT2G22310.1 (e_value=0.0) | Symbols: ATUBP4, UBP4 | ubiquitin-specific protease 4 | chr2:9476733-9478825 REVERSE LENGTH=365;; (*ITAG) Solyc04g056290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53126386-53139288 transcript_region:SL2.40ch04:53126386..53139288- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9HFG1_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00003042g0014.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|330; (*GB) gi|224096171|ref|XP_002310560.1| (e_value=2e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=5e-71) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT1G34670.1 (e_value=3e-99) | Symbols: AtMYB93, MYB93 | myb domain protein 93 | chr1:12709128-12710423 FORWARD LENGTH=365;; (*ITAG) Solyc05g051550.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61076188-61078333 transcript_region:SL2.40ch05:61076188..61078333+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00003042g0015.1 protein AED:0.31 eAED:0.31 QI:0|1|0.75|1|0.90|0.91|12|0|509; (*GB) gi|350537283|ref|NP_001234799.1| (e_value=0.0) cyclin dependent kinase C [Solanum lycopersicum];; (*SWP) sp|Q9LFT8|CDKC1_ARATH (e_value=0.0) Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1;; (*TAIR) AT5G10270.1 (e_value=0.0) | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505;; (*ITAG) Solyc04g056280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53113443-53125978 transcript_region:SL2.40ch04:53113443..53125978+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00035454g0007.1 protein AED:0.05 eAED:0.06 QI:43|0.66|0.25|1|0.33|0.5|4|0|373; (*GB) gi|225455627|ref|XP_002271141.1| (e_value=3e-53) PREDICTED: transcription factor bHLH120 [Vitis vinifera];; (*SWP) sp|Q9FLI0|BH120_ARATH (e_value=5e-38) Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2;; (*TAIR) AT5G51790.1 (e_value=3e-39) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21039762-21040594 FORWARD LENGTH=204;; (*ITAG) Solyc03g006910.2.1 (e_value=2e-98) genomic_reference:SL2.40ch03 gene_region:1472793-1474660 transcript_region:SL2.40ch03:1472793..1474660- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 **** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00008173g0004.1 protein AED:0.19 eAED:0.19 QI:315|0.77|0.8|1|0.77|0.9|10|235|592; (*GB) gi|3021532|emb|CAA04994.1| (e_value=0.0) glucose-6-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q43839|G6PDC_SOLTU (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G35790.1 (e_value=0.0) | Symbols: G6PD1 | glucose-6-phosphate dehydrogenase 1 | chr5:13956879-13959686 REVERSE LENGTH=576;; (*ITAG) Solyc07g045540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55999419-56004983 transcript_region:SL2.40ch07:55999419..56004983+ go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** O65856_TOBAC); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00008173g0112.1 protein AED:0.23 eAED:0.23 QI:0|1|0.90|1|0.9|0.81|11|0|524 NbS00008173g0111.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|3|0|299 NbS00014800g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|1|1|3|0|219; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=3e-104) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=2e-94) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=1e-95) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=8e-112) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00014800g0009.1 protein AED:0.13 eAED:0.14 QI:32|0.5|0.54|1|0.9|0.90|11|0|686; (*GB) gi|297743234|emb|CBI36101.3| (e_value=7e-150) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q80Y81|RNZ2_MOUSE (e_value=4e-39) Zinc phosphodiesterase ELAC protein 2 OS=Mus musculus GN=Elac2 PE=1 SV=1;; (*TAIR) AT3G16260.1 (e_value=1e-136) | Symbols: TRZ4 | tRNAse Z4 | chr3:5509397-5513118 FORWARD LENGTH=942;; (*ITAG) Solyc12g044370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44729636-44735803 transcript_region:SL2.40ch12:44729636..44735803+ go_terms:GO:0016787 functional_description:"Ribonuclease Z (AHRD V1 ***- B6JX69_SCHJY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0016787 NbS00014800g0007.1 protein AED:0.28 eAED:0.28 QI:120|1|1|1|0.33|0.75|4|323|97; (*GB) gi|255549886|ref|XP_002515994.1| (e_value=3e-49) Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis];; (*SWP) sp|A8E4L1|COX19_BOVIN (e_value=3e-19) Cytochrome c oxidase assembly protein COX19 OS=Bos taurus GN=COX19 PE=3 SV=1;; (*TAIR) AT1G66590.1 (e_value=5e-49) | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidase 19-1 | chr1:24841191-24842157 FORWARD LENGTH=98;; (*ITAG) Solyc12g044380.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44736444-44739232 transcript_region:SL2.40ch12:44736444..44739232- functional_description:"Cytochrome c oxidase assembly protein COX19 (AHRD V1 ***- B6TLQ2_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; NbS00003314g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|357129459|ref|XP_003566379.1| (e_value=1e-21) PREDICTED: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1-like [Brachypodium distachyon];; (*TAIR) AT3G56330.1 (e_value=4e-19) | Symbols: | N2,N2-dimethylguanosine tRNA methyltransferase | chr3:20890250-20891933 FORWARD LENGTH=433;; (*ITAG) Solyc06g049100.2.1 (e_value=3e-38) genomic_reference:SL2.40ch06 gene_region:28866325-28867783 transcript_region:SL2.40ch06:28866325..28867783- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B4W4K6_9CYAN); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00003314g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0.33|1|1|0.33|3|0|80; (*GB) gi|134672|sp|P11796.1|SODM_NICPL (e_value=5e-24) RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor;; (*SWP) sp|P11796|SODM_NICPL (e_value=2e-25) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=2e-19) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=1e-24) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00021222g0010.1 protein AED:0.01 eAED:0.02 QI:0|1|0.85|1|1|1|7|0|657; (*GB) gi|297739370|emb|CBI29360.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64380|PABP3_ARATH (e_value=0.0) Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1;; (*TAIR) AT1G22760.1 (e_value=0.0) | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055599-8058799 FORWARD LENGTH=660;; (*ITAG) Solyc00g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8760796-8764776 transcript_region:SL2.40ch00:8760796..8764776+ go_terms:GO:0008143,GO:0003743 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **** B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143,GO:0003743 NbS00021222g0008.1 protein AED:0.34 eAED:0.46 QI:489|0.5|0.6|0.8|0|0.2|5|0|90 NbS00021222g0011.1 protein AED:0.16 eAED:0.16 QI:58|0.25|0|1|0.75|0.6|5|0|257; (*GB) gi|255572311|ref|XP_002527094.1| (e_value=5e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71760.1 (e_value=3e-45) | Symbols: | unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr1:26989414-26990499 FORWARD LENGTH=259;; (*ITAG) Solyc00g009050.1.1 (e_value=1e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:8766371-8768154 transcript_region:SL2.40ch00:8766371..8768154- functional_description:"UPF0544 protein C5orf45 (AHRD V1 ***- CE045_HUMAN)"; NbS00026239g0002.1 protein AED:0.33 eAED:0.34 QI:0|0.33|0|1|0|0.25|4|0|209; (*GB) gi|225427189|ref|XP_002277964.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera];; (*TAIR) AT4G17900.1 (e_value=2e-53) | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227;; (*ITAG) Solyc08g005100.2.1 (e_value=1e-62) genomic_reference:SL2.40ch08 gene_region:70109-72816 transcript_region:SL2.40ch08:70109..72816+ go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **-* D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00004972g0006.1 protein AED:0.33 eAED:0.40 QI:0|0|0|0.8|0.25|0.2|5|0|173; (*ITAG) Solyc01g073870.2.1 (e_value=2e-36) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00004972g0005.1 protein AED:0.41 eAED:0.73 QI:0|0|0|1|0|0|3|0|81 NbS00004972g0111.1 protein AED:0.41 eAED:0.45 QI:0|0|0.25|1|1|1|4|297|80 NbS00004972g0108.1 protein AED:0.17 eAED:0.17 QI:133|0|0.5|1|1|1|2|0|460 NbS00018779g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|454; (*GB) gi|209954733|dbj|BAG80557.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=8e-120) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=3e-62) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g007480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1758242-1759603 transcript_region:SL2.40ch11:1758242..1759603- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *--- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00018779g0008.1 protein AED:0.32 eAED:0.36 QI:27|0|0|1|0|0|2|0|126; (*GB) gi|57013884|ref|YP_173358.1| (e_value=3e-71) orf297a [Nicotiana tabacum];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=3e-21) DNA polymerase OS=Zea mays PE=3 SV=1;; (*ITAG) Solyc03g013470.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:5876619-5878402 transcript_region:SL2.40ch03:5876619..5878402- go_terms:GO:0006260 functional_description:"DNA polymerase (AHRD V1 *-*- Q6QZN8_DAUCA); contains Interpro domain(s) IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus "; GO:0006260 NbS00047833g0004.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|251; (*GB) gi|224076936|ref|XP_002305058.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT2G42760.1 (e_value=8e-18) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc07g055270.1.1 (e_value=4e-72) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60677501-60678196 transcript_region:SL2.40ch07:60677501..60678196- functional_description:"Unknown Protein (AHRD V1)"; NbS00007994g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0|0.33|3|0|298; (*GB) gi|309385617|gb|ADO66676.1| (e_value=7e-175) X intrinsic protein [Nicotiana sylvestris];; (*SWP) sp|Q9ZVX8|PIP28_ARATH (e_value=2e-16) Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1;; (*TAIR) AT2G16850.1 (e_value=1e-17) | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsic protein 2;8 | chr2:7301647-7303180 FORWARD LENGTH=278;; (*ITAG) Solyc10g054800.1.1 (e_value=1e-145) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:51426730-51427883 transcript_region:SL2.40ch10:51426730..51427883- go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 ***- D3TQR7_GLOMM); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0016020 NbS00007994g0001.1 protein AED:0.28 eAED:0.28 QI:129|1|1|1|0.83|0.71|7|297|272; (*GB) gi|255576737|ref|XP_002529256.1| (e_value=2e-166) ER lumen protein retaining receptor, putative [Ricinus communis];; (*SWP) sp|P48583|ERD2_CAEEL (e_value=2e-27) ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2;; (*TAIR) AT1G75760.1 (e_value=2e-155) | Symbols: | ER lumen protein retaining receptor family protein | chr1:28446940-28448421 REVERSE LENGTH=272;; (*ITAG) Solyc01g111090.2.1 (e_value=9e-169) genomic_reference:SL2.40ch01 gene_region:89231575-89237853 transcript_region:SL2.40ch01:89231575..89237853- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor family protein (AHRD V1 ***- D7LL09_ARALY); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00000297g0013.1 protein AED:0.25 eAED:0.41 QI:0|0.33|0|1|0.16|0|7|0|256; (*GB) gi|297741315|emb|CBI32446.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|P52711|CBP23_HORVU (e_value=4e-23) Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1;; (*TAIR) AT3G07990.1 (e_value=4e-22) | Symbols: SCPL27 | serine carboxypeptidase-like 27 | chr3:2552544-2554644 FORWARD LENGTH=459;; (*ITAG) Solyc04g079330.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61438925-61441627 transcript_region:SL2.40ch04:61438925..61441627+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** B6SWY3_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00000297g0012.1 protein AED:0.17 eAED:0.17 QI:375|0.90|0.83|1|0.81|0.75|12|238|587; (*GB) gi|359492067|ref|XP_002282310.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266128 [Vitis vinifera];; (*TAIR) AT4G37080.3 (e_value=1e-162) | Symbols: | Protein of unknown function, DUF547 | chr4:17473719-17476716 FORWARD LENGTH=610;; (*ITAG) Solyc04g079340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61453919-61457313 transcript_region:SL2.40ch04:61453919..61457313+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 ***- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00000297g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|225458523|ref|XP_002282303.1| (e_value=1e-55) PREDICTED: uncharacterized protein LOC100243808 [Vitis vinifera];; (*TAIR) AT2G26530.2 (e_value=4e-19) | Symbols: AR781 | Protein of unknown function (DUF1645) | chr2:11283036-11283989 REVERSE LENGTH=290;; (*ITAG) Solyc04g079350.1.1 (e_value=5e-99) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:61465612-61466565 transcript_region:SL2.40ch04:61465612..61466565+ functional_description:"Pheromone receptor-like protein (Fragment) (AHRD V1 *--- Q7XHJ1_QUERO); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00014268g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|1|1|6|137|562; (*GB) gi|302143562|emb|CBI22123.3| (e_value=2e-109) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PKG0|LARP1_HUMAN (e_value=5e-20) La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2;; (*TAIR) AT4G35890.1 (e_value=2e-60) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr4:16997433-17000410 FORWARD LENGTH=523;; (*ITAG) Solyc02g061960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28083055-28088915 transcript_region:SL2.40ch02:28083055..28088915+ functional_description:"La related protein-like (AHRD V1 *--- Q5NBG8_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00032106g0007.1 protein AED:0.00 eAED:0.00 QI:22|1|1|1|1|1|2|5|146; (*GB) gi|225441451|ref|XP_002279571.1| (e_value=5e-31) PREDICTED: uncharacterized protein LOC100264148 [Vitis vinifera];; (*TAIR) AT2G42110.1 (e_value=2e-23) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17562234-17562732 REVERSE LENGTH=137;; (*ITAG) Solyc03g120950.2.1 (e_value=2e-45) genomic_reference:SL2.40ch03 gene_region:63241149-63242556 transcript_region:SL2.40ch03:63241149..63242556+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019372g0013.1 protein AED:0.27 eAED:0.30 QI:178|0.62|0.55|0.88|0.5|0.77|9|0|303; (*GB) gi|359479812|ref|XP_002272463.2| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100261429 [Vitis vinifera];; (*TAIR) AT1G03180.1 (e_value=4e-89) | Symbols: | unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:773543-775179 FORWARD LENGTH=265;; (*ITAG) Solyc09g065110.2.1 (e_value=1e-144) genomic_reference:SL2.40ch09 gene_region:58574808-58579573 transcript_region:SL2.40ch09:58574808..58579573- functional_description:"Unknown Protein (AHRD V1)"; NbS00019372g0014.1 protein AED:0.05 eAED:0.05 QI:0|0.85|0.75|1|0.42|0.37|8|0|674; (*GB) gi|332801235|gb|AEE99259.1| (e_value=0.0) anthocyanin 1-like protein [Nicotiana sylvestris];; (*SWP) sp|Q9FT81|TT8_ARATH (e_value=2e-85) Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2;; (*TAIR) AT4G09820.1 (e_value=2e-86) | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:6182067-6186261 FORWARD LENGTH=518;; (*ITAG) Solyc09g065100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58546874-58554328 transcript_region:SL2.40ch09:58546874..58554328+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005515,GO:0003700 NbS00006291g0005.1 protein AED:0.20 eAED:0.21 QI:0|1|0.8|1|0.44|0.3|10|174|272; (*GB) gi|225463274|ref|XP_002264091.1| (e_value=2e-163) PREDICTED: putative deoxyribonuclease TATDN1 [Vitis vinifera];; (*SWP) sp|Q640V9|TATD1_XENLA (e_value=5e-93) Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1;; (*TAIR) AT3G52390.2 (e_value=9e-164) | Symbols: | TatD related DNase | chr3:19423105-19425183 REVERSE LENGTH=323;; (*ITAG) Solyc06g007310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1330322-1337690 transcript_region:SL2.40ch06:1330322..1337690- go_terms:GO:0008296 functional_description:"Deoxyribonuclease tatD (AHRD V1 ***- B6TDE6_MAIZE); contains Interpro domain(s) IPR012278 Deoxyribonuclease, TatD Mg-dependent "; GO:0008296 NbS00007288g0007.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|1|0.66|0.75|4|0|312; (*GB) gi|224115898|ref|XP_002317152.1| (e_value=3e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=2e-75) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G22150.1 (e_value=1e-109) | Symbols: PUX3 | plant UBX domain-containing protein 3 | chr4:11731272-11732800 REVERSE LENGTH=367;; (*ITAG) Solyc02g081140.2.1 (e_value=3e-163) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00007288g0010.1 protein AED:0.09 eAED:0.15 QI:56|1|0.5|1|0.66|0.75|4|0|262; (*GB) gi|3046821|dbj|BAA25546.1| (e_value=8e-175) NTH15 [Nicotiana tabacum];; (*SWP) sp|O22299|LET6_SOLLC (e_value=7e-143) Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum GN=LET6 PE=2 SV=1;; (*TAIR) AT1G62360.1 (e_value=3e-128) | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK homeobox transcription factor | chr1:23058796-23061722 REVERSE LENGTH=382;; (*ITAG) Solyc02g081120.2.1 (e_value=1e-144) genomic_reference:SL2.40ch02 gene_region:39767063-39773953 transcript_region:SL2.40ch02:39767063..39773953+ go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00029597g0007.1 protein AED:0.16 eAED:0.17 QI:0|0.84|0.77|0.97|0.92|0.9|40|0|1622; (*GB) gi|356545924|ref|XP_003541383.1| (e_value=0.0) PREDICTED: myosin-J heavy chain-like [Glycine max];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT1G04160.1 (e_value=0.0) | Symbols: XIB, ATXIB, XI-8, XI-B | myosin XI B | chr1:1086495-1096146 FORWARD LENGTH=1500;; (*ITAG) Solyc09g091080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65760237-65779915 transcript_region:SL2.40ch09:65760237..65779915+ go_terms:GO:0042803 functional_description:"Myosin XI-F (AHRD V1 ***- B0CN60_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00029948g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|0.5|0.8|5|0|127; (*GB) gi|359493828|ref|XP_002282618.2| (e_value=3e-78) PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera];; (*SWP) sp|Q9FN32|YIPL7_ARATH (e_value=4e-69) Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1;; (*TAIR) AT5G53940.1 (e_value=3e-70) | Symbols: | Yippee family putative zinc-binding protein | chr5:21897164-21898589 REVERSE LENGTH=129;; (*ITAG) Solyc12g013920.1.1 (e_value=5e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4753645-4757418 transcript_region:SL2.40ch12:4753645..4757418- functional_description:"Yippee family protein (AHRD V1 ***- D7MTM3_ARALY); contains Interpro domain(s) IPR004910 Yippee-like protein "; NbS00037039g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.61|0.92|1|1|13|0|641; (*GB) gi|359479934|ref|XP_002269237.2| (e_value=0.0) PREDICTED: kinesin-4-like [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G47500.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983;; (*ITAG) Solyc01g100120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81969682-81976667 transcript_region:SL2.40ch01:81969682..81976667- go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00000105g0006.1 protein AED:0.16 eAED:0.16 QI:74|1|1|1|1|1|3|382|120; (*GB) gi|225445883|ref|XP_002279327.1| (e_value=1e-64) PREDICTED: 40S ribosomal protein S12 [Vitis vinifera];; (*SWP) sp|Q9XHS0|RS12_HORVU (e_value=3e-61) 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1;; (*TAIR) AT2G32060.2 (e_value=4e-55) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:13639228-13640104 REVERSE LENGTH=144;; (*ITAG) Solyc01g103800.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:84081046-84083324 transcript_region:SL2.40ch01:84081046..84083324- go_terms:GO:0003735,GO:0003723 functional_description:"40S ribosomal protein S12 (AHRD V1 ***- A9P9K3_POPTR); contains Interpro domain(s) IPR000530 Ribosomal protein S12e "; GO:0003735,GO:0003723 NbS00032261g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.85|1|1|1|7|0|528; (*GB) gi|255585928|ref|XP_002533636.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8W4I7|CDPKD_ARATH (e_value=0.0) Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2;; (*TAIR) AT3G51850.1 (e_value=0.0) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528;; (*ITAG) Solyc09g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:369215-377428 transcript_region:SL2.40ch09:369215..377428- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 13 (AHRD V1 **** B9IGA3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00058381g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|360; (*GB) gi|225463844|ref|XP_002265179.1| (e_value=1e-161) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=3e-101) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=2e-102) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc01g081110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72954963-72956902 transcript_region:SL2.40ch01:72954963..72956902- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00003513g0008.1 protein AED:0.06 eAED:0.11 QI:0|0.2|0|1|0.4|0.16|6|0|495; (*GB) gi|365222870|gb|AEW69787.1| (e_value=0.0) Hop-interacting protein THI015 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=2e-161) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.1 (e_value=1e-162) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378542-12380474 FORWARD LENGTH=456;; (*ITAG) Solyc09g010690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4016066-4020196 transcript_region:SL2.40ch09:4016066..4020196+ go_terms:GO:0005200 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005200 NbS00003513g0007.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|0.66|0.75|4|246|163 NbS00033668g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|0.75|0.66|0.5|4|0|367; (*GB) gi|255587651|ref|XP_002534343.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9LSC2|Y3589_ARATH (e_value=8e-95) PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana GN=At3g15890 PE=1 SV=1;; (*TAIR) AT1G52540.1 (e_value=2e-100) | Symbols: | Protein kinase superfamily protein | chr1:19570298-19571884 REVERSE LENGTH=350;; (*ITAG) Solyc07g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1469689-1473103 transcript_region:SL2.40ch07:1469689..1473103+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B9IM85_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020670g0012.1 protein AED:0.30 eAED:0.72 QI:0|0.6|0.16|0.83|0.6|0.5|6|0|217; (*GB) gi|255569664|ref|XP_002525797.1| (e_value=2e-18) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q5NB82|NLP3_ORYSJ (e_value=3e-18) Protein NLP3 OS=Oryza sativa subsp. japonica GN=NLP3 PE=3 SV=1;; (*TAIR) AT1G64530.1 (e_value=1e-18) | Symbols: | Plant regulator RWP-RK family protein | chr1:23959820-23962896 FORWARD LENGTH=841;; (*ITAG) Solyc08g082750.2.1 (e_value=2e-24) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00020670g0011.1 protein AED:0.17 eAED:0.16 QI:337|0.88|0.7|1|0.88|0.9|10|170|1011; (*GB) gi|224072246|ref|XP_002303671.1| (e_value=8e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=2e-49) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=1e-50) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g008410.2.1 (e_value=1e-52) genomic_reference:SL2.40ch08 gene_region:2829724-2834799 transcript_region:SL2.40ch08:2829724..2834799+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER15_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00020670g0008.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.33|1|1|3|0|75 NbS00038626g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|225455856|ref|XP_002274167.1| (e_value=1e-43) PREDICTED: uncharacterized protein LOC100245771 [Vitis vinifera];; (*TAIR) AT1G49010.1 (e_value=9e-29) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:18132714-18133778 FORWARD LENGTH=314;; (*ITAG) Solyc03g119740.2.1 (e_value=6e-53) genomic_reference:SL2.40ch03 gene_region:62346231-62347604 transcript_region:SL2.40ch03:62346231..62347604- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00043403g0001.1 protein AED:0.01 eAED:0.01 QI:160|0|0.5|1|0|0.5|2|1045|145; (*GB) gi|255542490|ref|XP_002512308.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g042140.2.1 (e_value=2e-45) genomic_reference:SL2.40ch08 gene_region:29459160-29469300 transcript_region:SL2.40ch08:29459160..29469300+ functional_description:"Stress regulated protein isoform 3 (AHRD V1 **-- Q2KP22_9SOLN)"; NbS00043403g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.76|1|1|1|13|619|546; (*GB) gi|255546981|ref|XP_002514548.1| (e_value=0.0) rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis];; (*SWP) sp|Q9C667|CPNB4_ARATH (e_value=0.0) Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1;; (*TAIR) AT1G26230.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:9072388-9075272 REVERSE LENGTH=611;; (*ITAG) Solyc05g010240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4417123-4420793 transcript_region:SL2.40ch05:4417123..4420793+ go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00025314g0005.1 protein AED:0.13 eAED:0.19 QI:53|0|0|0.75|0.33|0|4|0|362; (*GB) gi|359474341|ref|XP_003631437.1| (e_value=8e-109) PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=4e-31) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT4G22580.1 (e_value=4e-106) | Symbols: | Exostosin family protein | chr4:11889382-11890689 REVERSE LENGTH=435;; (*ITAG) Solyc08g079040.1.1 (e_value=7e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59852908-59854221 transcript_region:SL2.40ch08:59852908..59854221- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8SQH4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00013414g0001.1 protein AED:0.18 eAED:0.32 QI:303|0.87|0.88|1|0|0.11|9|300|253; (*GB) gi|350538651|ref|NP_001234353.1| (e_value=4e-180) SNF1-related kinase [Solanum lycopersicum];; (*SWP) sp|Q75LR7|SAPK1_ORYSJ (e_value=2e-166) Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1;; (*TAIR) AT1G78290.3 (e_value=1e-160) | Symbols: | Protein kinase superfamily protein | chr1:29457457-29458909 REVERSE LENGTH=343;; (*ITAG) Solyc04g012160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4446264-4449928 transcript_region:SL2.40ch04:4446264..4449928+ go_terms:GO:0006970,GO:0006468 functional_description:"Serine-threonine protein kinase (AHRD V1 ***- Q09VQ1_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006970,GO:0006468 NbS00050894g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|0.5|2|0|79; (*GB) gi|224126599|ref|XP_002319877.1| (e_value=3e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08580.1 (e_value=2e-17) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:2715296-2716351 REVERSE LENGTH=123;; (*ITAG) Solyc03g096960.2.1 (e_value=5e-34) genomic_reference:SL2.40ch03 gene_region:52783754-52785783 transcript_region:SL2.40ch03:52783754..52785783+ functional_description:"Pm52 protein (AHRD V1 ***- Q2Z1Y5_PRUMU)"; NbS00050894g0003.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.33|1|1|3|0|108; (*GB) gi|255577161|ref|XP_002529464.1| (e_value=2e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G55125.2 (e_value=9e-30) | Symbols: | Ribosomal protein L31 | chr5:22372737-22372967 FORWARD LENGTH=76;; (*ITAG) Solyc11g068490.1.1 (e_value=7e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50278529-50278717 transcript_region:SL2.40ch11:50278529..50278717- functional_description:"cDNA clone J013021P22 full insert sequence (AHRD V1 ***- B7EAV4_ORYSJ)"; NbS00048643g0003.1 protein AED:0.59 eAED:0.92 QI:0|0|0|0.66|1|1|3|0|174 NbS00031742g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.88|0.84|1|0.83|0.89|19|0|1197; (*GB) gi|350534526|ref|NP_001233889.1| (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum];; (*SWP) sp|Q42877|RPB2_SOLLC (e_value=0.0) DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1;; (*TAIR) AT4G21710.1 (e_value=0.0) | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA polymerase family protein | chr4:11535684-11542200 REVERSE LENGTH=1188;; (*ITAG) Solyc02g078260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37583500-37591044 transcript_region:SL2.40ch02:37583500..37591044+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Y9_PETHY); contains Interpro domain(s) IPR007121 RNA polymerase, beta subunit, conserved site IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00028549g0019.1 protein AED:0.00 eAED:0.00 QI:160|1|0.5|1|1|1|2|0|101; (*GB) gi|255647677|gb|ACU24300.1| (e_value=2e-21) unknown [Glycine max];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=1e-14) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=8e-16) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc02g068070.2.1 (e_value=2e-26) genomic_reference:SL2.40ch02 gene_region:32696348-32701199 transcript_region:SL2.40ch02:32696348..32701199+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00028549g0017.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|0|135 NbS00028549g0018.1 protein AED:0.13 eAED:0.13 QI:700|0.75|1|1|1|1|5|190|193; (*GB) gi|359488593|ref|XP_003633784.1| (e_value=1e-90) PREDICTED: triacylglycerol lipase 2-like [Vitis vinifera];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=1e-74) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=1e-75) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc02g068070.2.1 (e_value=1e-120) genomic_reference:SL2.40ch02 gene_region:32696348-32701199 transcript_region:SL2.40ch02:32696348..32701199+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00028549g0026.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.75|1|0.71|0.75|8|518|777; (*GB) gi|147788411|emb|CAN69961.1| (e_value=0.0) hypothetical protein VITISV_008739 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=1e-149) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT5G14210.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:4578503-4581374 REVERSE LENGTH=775;; (*ITAG) Solyc02g068060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32685906-32690149 transcript_region:SL2.40ch02:32685906..32690149+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00028549g0022.1 protein AED:0.40 eAED:0.46 QI:0|0|0|1|0|0|2|0|94 NbS00028549g0021.1 protein AED:0.41 eAED:0.59 QI:0|0|0|1|0|0|2|0|84 NbS00047507g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.66|3|0|427; (*GB) gi|255568098|ref|XP_002525025.1| (e_value=0.0) phosphofructokinase, putative [Ricinus communis];; (*SWP) sp|Q9FIK0|K6PF2_ARATH (e_value=0.0) 6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1;; (*TAIR) AT5G47810.1 (e_value=0.0) | Symbols: PFK2 | phosphofructokinase 2 | chr5:19356569-19357989 REVERSE LENGTH=444;; (*ITAG) Solyc04g015200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5380570-5383618 transcript_region:SL2.40ch04:5380570..5383618- go_terms:GO:0006096,GO:0005945 functional_description:"6-phosphofructokinase 2 (AHRD V1 ***- B6TE72_MAIZE); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00047507g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|75 NbS00002059g0012.1 protein AED:0.21 eAED:0.21 QI:89|1|1|1|1|1|3|255|274; (*GB) gi|147766743|emb|CAN69697.1| (e_value=1e-73) hypothetical protein VITISV_014565 [Vitis vinifera];; (*SWP) sp|F4J5M9|CLC3_ARATH (e_value=3e-56) Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1;; (*TAIR) AT3G51890.1 (e_value=3e-57) | Symbols: | Clathrin light chain protein | chr3:19249686-19250890 REVERSE LENGTH=258;; (*ITAG) Solyc02g078540.2.1 (e_value=4e-49) genomic_reference:SL2.40ch02 gene_region:37780626-37784558 transcript_region:SL2.40ch02:37780626..37784558- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00002059g0017.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|85; (*GB) gi|224109332|ref|XP_002315162.1| (e_value=1e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40070.2 (e_value=3e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink). | chr2:16728378-16731040 REVERSE LENGTH=567;; (*ITAG) Solyc03g096090.2.1 (e_value=4e-32) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00002059g0011.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|225425304|ref|XP_002273119.1| (e_value=8e-40) PREDICTED: 40S ribosomal protein S27-2 [Vitis vinifera];; (*SWP) sp|Q9M2F1|RS272_ARATH (e_value=5e-40) 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2;; (*TAIR) AT3G61110.1 (e_value=4e-41) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86;; (*ITAG) Solyc01g008090.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:2223864-2226034 transcript_region:SL2.40ch01:2223864..2226034- go_terms:GO:0003735 functional_description:"Ribosomal protein S27 (AHRD V1 ***- Q3HVK9_SOLTU); contains Interpro domain(s) IPR000592 Ribosomal protein S27e "; GO:0003735 NbS00014789g0001.1 protein AED:0.01 eAED:0.01 QI:12|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc01g095560.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:78535286-78536197 transcript_region:SL2.40ch01:78535286..78536197+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043159g0005.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|0|0|2|0|182; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-29) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=8e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011155g0004.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|1|1|2|0|103 NbS00009530g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|81; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00009530g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|380; (*GB) gi|89474468|gb|ABD72961.1| (e_value=1e-87) GRAS5 [Solanum lycopersicum];; (*SWP) sp|Q8S4W7|GAI1_VITVI (e_value=1e-11) DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1;; (*TAIR) AT3G03450.1 (e_value=5e-12) | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547;; (*ITAG) Solyc09g018460.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14933729-14935231 transcript_region:SL2.40ch09:14933729..14935231- functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00034068g0005.1 protein AED:0.01 eAED:0.01 QI:176|1|1|1|1|1|3|294|712; (*GB) gi|224101995|ref|XP_002312505.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUM0|C3H17_ARATH (e_value=6e-100) Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1;; (*TAIR) AT2G02160.1 (e_value=5e-101) | Symbols: | CCCH-type zinc finger family protein | chr2:553407-555899 REVERSE LENGTH=669;; (*ITAG) Solyc04g008550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2166940-2170876 transcript_region:SL2.40ch04:2166940..2170876- go_terms:GO:0008152,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 17 (AHRD V1 ***- C3H17_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008152,GO:0008270 NbS00034068g0004.1 protein AED:0.23 eAED:0.23 QI:10|1|0.75|1|0.33|0.25|4|203|177; (*GB) gi|297738286|emb|CBI27487.3| (e_value=4e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q56XX3|Y2215_ARATH (e_value=1e-39) Uncharacterized protein At2g02148 OS=Arabidopsis thaliana GN=At2g02148 PE=2 SV=1;; (*TAIR) AT2G02148.1 (e_value=1e-40) | Symbols: | unknown protein. | chr2:547389-549316 REVERSE LENGTH=432;; (*ITAG) Solyc04g008560.2.1 (e_value=4e-100) genomic_reference:SL2.40ch04 gene_region:2173271-2179828 transcript_region:SL2.40ch04:2173271..2179828- go_terms:GO:0008152 functional_description:"Unknown Protein (AHRD V1)"; GO:0008152 NbS00047653g0006.1 protein AED:0.14 eAED:0.15 QI:0|0.92|0.92|1|0.61|0.71|14|395|335; (*GB) gi|224079375|ref|XP_002305841.1| (e_value=2e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q58DT8|WDR55_BOVIN (e_value=7e-57) WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1;; (*TAIR) AT2G34260.1 (e_value=4e-148) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:14465899-14468416 FORWARD LENGTH=353;; (*ITAG) Solyc02g038750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22219831-22225637 transcript_region:SL2.40ch02:22219831..22225637- go_terms:GO:0016505,GO:0000166 functional_description:"WD repeat-containing protein 55 (AHRD V1 **-- C1BNG0_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0016505,GO:0000166 NbS00055995g0004.1 protein AED:0.07 eAED:0.07 QI:257|0.6|0.33|1|0.4|0.5|6|0|155; (*GB) gi|255540631|ref|XP_002511380.1| (e_value=2e-82) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G63000.1 (e_value=5e-77) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:25280151-25281463 REVERSE LENGTH=201;; (*ITAG) Solyc03g112810.2.1 (e_value=2e-88) genomic_reference:SL2.40ch03 gene_region:57180241-57183176 transcript_region:SL2.40ch03:57180241..57183176+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019252g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|291; (*GB) gi|255587510|ref|XP_002534297.1| (e_value=3e-133) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LTR2|TGD2_ARATH (e_value=1e-124) Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1;; (*TAIR) AT3G20320.1 (e_value=1e-125) | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr3:7087657-7089640 REVERSE LENGTH=381;; (*ITAG) Solyc02g082030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40335615-40339430 transcript_region:SL2.40ch02:40335615..40339430+ go_terms:GO:0005319,GO:0005543 functional_description:"ABC-type transport system-like (AHRD V1 **-- Q5JL23_ORYSJ); contains Interpro domain(s) IPR003399 Mammalian cell entry related "; GO:0005319,GO:0005543 NbS00019252g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|190607475|gb|ACE79400.1| (e_value=4e-63) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=1e-12) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00019252g0009.1 protein AED:0.69 eAED:0.69 QI:0|0.2|0|0.5|1|1|6|0|195; (*GB) gi|388514885|gb|AFK45504.1| (e_value=6e-49) unknown [Lotus japonicus];; (*SWP) sp|Q9LTR2|TGD2_ARATH (e_value=1e-43) Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic OS=Arabidopsis thaliana GN=TGD2 PE=1 SV=1;; (*TAIR) AT3G20320.1 (e_value=9e-45) | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr3:7087657-7089640 REVERSE LENGTH=381;; (*ITAG) Solyc02g082030.2.1 (e_value=6e-52) genomic_reference:SL2.40ch02 gene_region:40335615-40339430 transcript_region:SL2.40ch02:40335615..40339430+ go_terms:GO:0005319,GO:0005543 functional_description:"ABC-type transport system-like (AHRD V1 **-- Q5JL23_ORYSJ); contains Interpro domain(s) IPR003399 Mammalian cell entry related "; GO:0005319,GO:0005543 NbS00019414g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|213; (*GB) gi|350539946|ref|NP_001233821.1| (e_value=1e-82) TCP transcription factor 19 [Solanum lycopersicum];; (*SWP) sp|Q9SJK7|TCP11_ARATH (e_value=3e-38) Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1;; (*TAIR) AT2G37000.1 (e_value=2e-39) | Symbols: | TCP family transcription factor | chr2:15540390-15540956 FORWARD LENGTH=188;; (*ITAG) Solyc09g008030.1.1 (e_value=2e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1505098-1505703 transcript_region:SL2.40ch09:1505098..1505703- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00019414g0008.1 protein AED:0.20 eAED:0.24 QI:374|0.66|0.6|0.9|0.66|0.6|10|0|340; (*GB) gi|297741626|emb|CBI32758.3| (e_value=1e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G04250.2 (e_value=4e-57) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc09g008020.2.1 (e_value=5e-154) genomic_reference:SL2.40ch09 gene_region:1499865-1504313 transcript_region:SL2.40ch09:1499865..1504313+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00006177g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|255572634|ref|XP_002527250.1| (e_value=3e-76) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07350.1 (e_value=6e-62) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g007580.1.1 (e_value=1e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1578789-1579688 transcript_region:SL2.40ch06:1578789..1579688+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00039753g0011.1 protein AED:0.28 eAED:0.29 QI:0|0.33|0|0.85|1|1|7|0|436; (*GB) gi|75324707|sp|Q6T7E8.1|PURA_TOBAC (e_value=0.0) RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=AdSS; AltName: Full=IMP--aspartate ligase; Flags: Precursor;; (*SWP) sp|Q6T7E8|PURA_TOBAC (e_value=0.0) Adenylosuccinate synthetase, chloroplastic OS=Nicotiana tabacum GN=PURA PE=2 SV=1;; (*TAIR) AT3G57610.1 (e_value=0.0) | Symbols: ADSS | adenylosuccinate synthase | chr3:21334519-21336603 REVERSE LENGTH=490;; (*ITAG) Solyc02g085520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42949519-42961417 transcript_region:SL2.40ch02:42949519..42961417- go_terms:GO:0004019 functional_description:"Adenylosuccinate synthetase, chloroplastic (AHRD V1 **** PURA_SOLBU); contains Interpro domain(s) IPR001114 Adenylosuccinate synthetase "; GO:0004019 NbS00039753g0015.1 protein AED:0.20 eAED:0.31 QI:84|0.44|0.3|0.9|0.66|0.6|10|420|499; (*GB) gi|255557939|ref|XP_002519998.1| (e_value=1e-169) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=6e-86) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=4e-87) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc10g080330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60938838-60941475 transcript_region:SL2.40ch10:60938838..60941475- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039753g0006.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|359481780|ref|XP_002277662.2| (e_value=1e-64) PREDICTED: dehydration-responsive element-binding protein 2F-like [Vitis vinifera];; (*SWP) sp|Q9SVX5|DRE2F_ARATH (e_value=2e-55) Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1;; (*TAIR) AT3G57600.1 (e_value=2e-56) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:21332841-21333674 FORWARD LENGTH=277;; (*ITAG) Solyc10g080310.1.1 (e_value=4e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60931857-60932128 transcript_region:SL2.40ch10:60931857..60932128+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 ***- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00039753g0001.1 protein AED:0.11 eAED:0.21 QI:58|0.66|0.5|1|1|1|4|0|237; (*GB) gi|224087048|ref|XP_002308044.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g080300.1.1 (e_value=4e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60928098-60929182 transcript_region:SL2.40ch10:60928098..60929182+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9LZR1_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677,GO:0045449 NbS00004038g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|225446853|ref|XP_002283729.1| (e_value=1e-83) PREDICTED: uncharacterized protein LOC100257403 [Vitis vinifera];; (*TAIR) AT2G42900.1 (e_value=2e-45) | Symbols: | Plant basic secretory protein (BSP) family protein | chr2:17854599-17855429 FORWARD LENGTH=276;; (*ITAG) Solyc10g007750.1.1 (e_value=3e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1990697-1991530 transcript_region:SL2.40ch10:1990697..1991530+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007541 Plant Basic Secretory Protein "; NbS00004038g0016.1 protein AED:0.14 eAED:0.14 QI:246|0.85|0.87|1|0.42|0.62|8|120|851; (*GB) gi|225446635|ref|XP_002281104.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262654 isoform 1 [Vitis vinifera];; (*TAIR) AT2G42700.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:17778464-17782034 FORWARD LENGTH=838;; (*ITAG) Solyc12g013950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4775569-4784508 transcript_region:SL2.40ch12:4775569..4784508- go_terms:GO:0016192 functional_description:"AT2G42700-like protein (Fragment) (AHRD V1 *-*- D6PPI9_9BRAS); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0016192 NbS00004038g0017.1 protein AED:0.14 eAED:0.16 QI:0|0.88|0.7|1|0.55|0.5|10|682|383; (*GB) gi|225446639|ref|XP_002281125.1| (e_value=8e-87) PREDICTED: 50S ribosomal protein L1-like [Vitis vinifera];; (*SWP) sp|A8LLK0|RL1_DINSH (e_value=1e-32) 50S ribosomal protein L1 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplA PE=3 SV=1;; (*TAIR) AT2G42710.1 (e_value=1e-77) | Symbols: | Ribosomal protein L1p/L10e family | chr2:17782352-17784830 FORWARD LENGTH=415;; (*ITAG) Solyc12g013990.1.1 (e_value=2e-180) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:4825557-4835358 transcript_region:SL2.40ch12:4825557..4835358+ go_terms:GO:0006396,GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L1 (AHRD V1 ***- B6TB66_MAIZE); contains Interpro domain(s) IPR005878 Ribosomal protein L1, bacterial-type "; GO:0006396,GO:0005840,GO:0015934 NbS00009059g0003.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|225444776|ref|XP_002279848.1| (e_value=6e-93) PREDICTED: uncharacterized protein LOC100249118 [Vitis vinifera];; (*TAIR) AT2G31670.1 (e_value=4e-86) | Symbols: | Stress responsive alpha-beta barrel domain protein | chr2:13472699-13473490 REVERSE LENGTH=263;; (*ITAG) Solyc07g041490.1.1 (e_value=1e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:50632738-50633541 transcript_region:SL2.40ch07:50632738..50633541+ functional_description:"Stress responsive alpha-beta barrel domain protein (AHRD V1 *-*- C7QRA6_CYAP0); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00009059g0001.1 protein AED:0.14 eAED:0.22 QI:0|0|0|1|1|1|3|0|251; (*GB) gi|48210029|gb|AAT40540.1| (e_value=8e-49) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=1e-42) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=1e-43) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=1e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009059g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|419; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=7e-179) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=5e-180) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009059g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|470; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=0.0) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009059g0115.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|1|0.75|0.6|5|0|478 NbS00009059g0112.1 protein AED:0.28 eAED:0.29 QI:0|0.9|0.71|1|0.85|0.80|21|0|1016 NbS00009059g0114.1 protein AED:0.22 eAED:0.53 QI:0|0|0|0.57|0.16|0.14|7|0|277 NbS00009059g0111.1 protein AED:0.68 eAED:1.00 QI:0|0|0|0.4|0.5|0.4|5|0|140 NbS00009059g0113.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0.33|0.25|4|60|364 NbS00002522g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|478|255; (*GB) gi|44917135|dbj|BAD12168.1| (e_value=0.0) 14-3-3 a-1 protein [Nicotiana tabacum];; (*SWP) sp|P93342|1433A_TOBAC (e_value=0.0) 14-3-3-like protein A OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78300.1 (e_value=1e-163) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g012120.2.1 (e_value=1e-177) genomic_reference:SL2.40ch04 gene_region:4428571-4430128 transcript_region:SL2.40ch04:4428571..4430128- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_ONCMY); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00019363g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|357515097|ref|XP_003627837.1| (e_value=1e-11) NBS resistance protein [Medicago truncatula];; (*ITAG) Solyc01g017760.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019363g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|402; (*GB) gi|113205274|gb|ABI34321.1| (e_value=9e-84) RNase H family protein [Solanum demissum];; (*ITAG) Solyc03g093900.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00011777g0002.1 protein AED:0.21 eAED:0.22 QI:0|1|0|1|0|0|2|0|158; (*GB) gi|57013997|ref|YP_173468.1| (e_value=9e-30) hypothetical protein NitaMp131 [Nicotiana tabacum];; (*ITAG) Solyc00g112190.2.1 (e_value=3e-90) genomic_reference:SL2.40ch00 gene_region:16182668-16183977 transcript_region:SL2.40ch00:16182668..16183977- functional_description:"Unknown Protein (AHRD V1)"; NbS00000974g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|1|1|2|85|265; (*GB) gi|225438922|ref|XP_002284043.1| (e_value=2e-149) PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=1e-43) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=9e-144) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092770.2.1 (e_value=2e-168) genomic_reference:SL2.40ch02 gene_region:48303721-48305719 transcript_region:SL2.40ch02:48303721..48305719+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00009112g0010.1 protein AED:0.08 eAED:0.08 QI:285|1|1|1|0.66|0.5|4|227|398; (*GB) gi|359482886|ref|XP_002277925.2| (e_value=4e-171) PREDICTED: uncharacterized protein LOC100241183 [Vitis vinifera];; (*TAIR) AT3G16490.1 (e_value=2e-92) | Symbols: IQD26 | IQ-domain 26 | chr3:5603962-5605489 REVERSE LENGTH=389;; (*ITAG) Solyc06g066430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38090484-38092311 transcript_region:SL2.40ch06:38090484..38092311- go_terms:GO:0005516 functional_description:"Calmodulin-binding family protein (AHRD V1 **-* Q9ZU28_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00009112g0011.1 protein AED:0.26 eAED:0.26 QI:2|1|0.88|1|1|0.88|9|0|497; (*GB) gi|45387407|gb|AAS60194.1| (e_value=0.0) hexokinase 3 [Nicotiana tabacum];; (*SWP) sp|Q9SQ76|HXK2_SOLTU (e_value=0.0) Hexokinase-2 OS=Solanum tuberosum GN=HXK2 PE=2 SV=1;; (*TAIR) AT2G19860.1 (e_value=0.0) | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570818-8573762 FORWARD LENGTH=502;; (*ITAG) Solyc06g066440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38097051-38101667 transcript_region:SL2.40ch06:38097051..38101667- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FR27_SOLLC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbS00009112g0108.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|266 NbS00009112g0110.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|98 NbS00009112g0112.1 protein AED:0.18 eAED:0.25 QI:0|0|0|1|0.5|0.33|3|0|130 NbS00001849g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|22128591|gb|AAM52341.1| (e_value=2e-75) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=8e-40) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=6e-41) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001849g0016.1 protein AED:0.33 eAED:0.32 QI:0|0.16|0.14|1|0.33|0.28|7|46|836; (*GB) gi|6630464|gb|AAF19552.1|AC007190_20 (e_value=1e-178) F23N19.4 [Arabidopsis thaliana];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-101) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-101) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=4e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001849g0005.1 protein AED:0.36 eAED:0.51 QI:0|0|0|1|1|1|2|0|142; (*GB) gi|22128587|gb|AAM52339.1| (e_value=6e-57) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=6e-31) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=5e-32) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=5e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001849g0017.1 protein AED:0.76 eAED:1.00 QI:0|0|0|0.66|0.5|0.66|3|0|72; (*GB) gi|94466657|emb|CAJ44457.1| (e_value=3e-26) ALY protein [Nicotiana benthamiana];; (*ITAG) Solyc10g086400.1.1 (e_value=8e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00001849g0018.1 protein AED:0.45 eAED:0.54 QI:0|0|0|1|0|0|6|0|335; (*GB) gi|22128591|gb|AAM52341.1| (e_value=4e-36) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9LPX2|PPR39_ARATH (e_value=2e-12) Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1;; (*TAIR) AT1G12775.1 (e_value=1e-13) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4353906-4355840 FORWARD LENGTH=644;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00044490g0003.1 protein AED:0.28 eAED:0.28 QI:0|0.86|0.75|0.87|0.86|0.81|16|0|762; (*GB) gi|225448751|ref|XP_002281489.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255322 [Vitis vinifera];; (*SWP) sp|Q9Z1A9|TBCD8_MOUSE (e_value=5e-39) TBC1 domain family member 8 OS=Mus musculus GN=Tbc1d8 PE=2 SV=2;; (*TAIR) AT3G55020.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:20389278-20394713 REVERSE LENGTH=777;; (*ITAG) Solyc04g009560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2961142-2970580 transcript_region:SL2.40ch04:2961142..2970580- go_terms:GO:0005622 functional_description:"TBC1 domain family member 8B (AHRD V1 *--- B9A6K5_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00060920g0004.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|5|0|284; (*GB) gi|15240300|ref|NP_200970.1| (e_value=4e-49) myb-like transcription factor family protein [Arabidopsis thaliana];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=3e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G61620.1 (e_value=9e-52) | Symbols: | myb-like transcription factor family protein | chr5:24772383-24773507 FORWARD LENGTH=317;; (*ITAG) Solyc06g034030.2.1 (e_value=9e-111) genomic_reference:SL2.40ch06 gene_region:20220561-20223287 transcript_region:SL2.40ch06:20220561..20223287+ go_terms:GO:0003677,GO:0008270 functional_description:"Myb family transcription factor (AHRD V1 *-*- Q2A9N2_BRAOL); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677,GO:0008270 NbS00016997g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|225; (*GB) gi|15230422|ref|NP_187823.1| (e_value=4e-132) RAB GTPase-like protein A4D [Arabidopsis thaliana];; (*SWP) sp|Q9LH50|RAA4D_ARATH (e_value=1e-133) Ras-related protein RABA4d OS=Arabidopsis thaliana GN=RABA4D PE=1 SV=1;; (*TAIR) AT3G12160.1 (e_value=9e-135) | Symbols: ATRABA4D, RABA4D | RAB GTPase homolog A4D | chr3:3879495-3880437 REVERSE LENGTH=222;; (*ITAG) Solyc10g079030.1.1 (e_value=8e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59995245-59996726 transcript_region:SL2.40ch10:59995245..59996726- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00006841g0003.1 protein AED:0.24 eAED:0.24 QI:284|1|1|1|0.66|0.75|4|120|287; (*GB) gi|115291793|gb|ABI93215.1| (e_value=0.0) water channel protein [Nicotiana tabacum];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=0.0) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=0.0) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc08g081190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61427665-61431015 transcript_region:SL2.40ch08:61427665..61431015+ go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- O24662_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00038103g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.42|0.25|0.75|0.85|0.87|8|0|636; (*GB) gi|348161233|gb|AEP67941.1| (e_value=2e-147) protein phosphatase 2C [Fragaria x ananassa];; (*SWP) sp|O04719|P2C77_ARATH (e_value=3e-130) Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1;; (*TAIR) AT5G57050.1 (e_value=2e-131) | Symbols: ABI2, AtABI2 | Protein phosphatase 2C family protein | chr5:23087720-23089303 FORWARD LENGTH=423;; (*ITAG) Solyc07g040990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48808707-48811933 transcript_region:SL2.40ch07:48808707..48811933+ go_terms:GO:0005515 functional_description:"Protein phosphatase 2C (AHRD V1 ***- A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0005515 NbS00013926g0001.1 protein AED:0.32 eAED:0.32 QI:138|0.55|0.8|0.9|1|1|10|375|343; (*GB) gi|225461490|ref|XP_002285059.1| (e_value=2e-164) PREDICTED: uncharacterized protein LOC100252134 isoform 2 [Vitis vinifera];; (*TAIR) AT5G53860.1 (e_value=1e-144) | Symbols: EMB64, emb2737 | embryo defective 2737 | chr5:21865353-21868576 FORWARD LENGTH=402;; (*ITAG) Solyc12g013890.1.1 (e_value=3e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4682111-4693552 transcript_region:SL2.40ch12:4682111..4693552+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 ***- Q9FN40_ARATH)"; NbS00013926g0107.1 protein AED:0.03 eAED:0.04 QI:0|0.25|0|1|0.5|0.2|5|0|402 NbS00036175g0006.1 protein AED:0.22 eAED:0.22 QI:126|1|1|1|1|1|2|115|277; (*GB) gi|225470960|ref|XP_002266683.1| (e_value=4e-116) PREDICTED: uncharacterized protein LOC100253490 [Vitis vinifera];; (*TAIR) AT4G00905.1 (e_value=9e-106) | Symbols: | NC domain-containing protein-related | chr4:387865-389060 FORWARD LENGTH=263;; (*ITAG) Solyc12g055850.1.1 (e_value=7e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47218869-47222331 transcript_region:SL2.40ch12:47218869..47222331+ functional_description:"NC domain-containing protein (AHRD V1 **-- A6MD14_9ORYZ); contains Interpro domain(s) IPR007053 NC "; NbS00036175g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|228 NbS00061109g0002.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|2|0|170; (*GB) gi|76160935|gb|ABA40431.1| (e_value=8e-44) unknown [Solanum tuberosum];; (*TAIR) AT5G25280.2 (e_value=4e-33) | Symbols: | serine-rich protein-related | chr5:8773882-8774544 FORWARD LENGTH=220;; (*ITAG) Solyc12g009880.1.1 (e_value=2e-71) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3055562-3056056 transcript_region:SL2.40ch12:3055562..3056056- functional_description:"Serine-rich protein (AHRD V1 ***- Q8L8M8_ARATH)"; NbS00024678g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|180 NbS00024678g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|229 NbS00052631g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|3|232|523; (*GB) gi|255539645|ref|XP_002510887.1| (e_value=0.0) alpha-l-fucosidase, putative [Ricinus communis];; (*SWP) sp|Q8GW72|FUCO1_ARATH (e_value=4e-165) Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2;; (*TAIR) AT2G28100.1 (e_value=3e-166) | Symbols: ATFUC1, FUC1 | alpha-L-fucosidase 1 | chr2:11974803-11976489 FORWARD LENGTH=506;; (*ITAG) Solyc03g006980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1541306-1544689 transcript_region:SL2.40ch03:1541306..1544689+ go_terms:GO:0004560,GO:0005515 functional_description:"Alpha-L-fucosidase 1 (AHRD V1 **** B6U1Y8_MAIZE); contains Interpro domain(s) IPR000933 Glycoside hydrolase, family 29 "; GO:0004560,GO:0005515 NbS00008314g0001.1 protein AED:0.41 eAED:0.55 QI:0|0.4|0.45|1|0.9|0.81|11|116|313; (*GB) gi|255537541|ref|XP_002509837.1| (e_value=4e-83) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G41390.1 (e_value=3e-76) | Symbols: | PLAC8 family protein | chr5:16565576-16567253 FORWARD LENGTH=264;; (*ITAG) Solyc12g056210.1.1 (e_value=5e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47526767-47531237 transcript_region:SL2.40ch12:47526767..47531237- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00001965g0010.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|3|0|290; (*GB) gi|255556470|ref|XP_002519269.1| (e_value=3e-84) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=2e-81) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=3e-80) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc05g053350.2.1 (e_value=2e-107) genomic_reference:SL2.40ch05 gene_region:62620520-62623062 transcript_region:SL2.40ch05:62620520..62623062+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00037198g0012.1 protein AED:0.28 eAED:0.28 QI:121|0.82|0.83|0.94|0.58|0.72|18|334|544; (*GB) gi|225461530|ref|XP_002285156.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 5-like [Vitis vinifera];; (*TAIR) AT3G15180.1 (e_value=3e-165) | Symbols: | ARM repeat superfamily protein | chr3:5111952-5115803 FORWARD LENGTH=519;; (*ITAG) Solyc07g062850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62714809-62722725 transcript_region:SL2.40ch07:62714809..62722725+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 ***- Q9LIL7_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00037198g0007.1 protein AED:0.41 eAED:0.41 QI:95|0.33|0.5|1|1|1|4|0|211; (*GB) gi|225461526|ref|XP_002285149.1| (e_value=2e-51) PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ASV6|RR20_ARATH (e_value=4e-39) 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=1 SV=1;; (*TAIR) AT3G15190.1 (e_value=3e-40) | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116216-5117412 FORWARD LENGTH=202;; (*ITAG) Solyc07g062870.2.1 (e_value=6e-79) genomic_reference:SL2.40ch07 gene_region:62729882-62733164 transcript_region:SL2.40ch07:62729882..62733164+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S20 (AHRD V1 *-*- RS20_THEEB); contains Interpro domain(s) IPR002583 Ribosomal protein S20 "; GO:0005840 NbS00037198g0006.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|255582939|ref|XP_002532240.1| (e_value=5e-18) 30S ribosomal protein S20, putative [Ricinus communis];; (*SWP) sp|Q9ASV6|RR20_ARATH (e_value=9e-18) 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=1 SV=1;; (*TAIR) AT3G15190.1 (e_value=7e-19) | Symbols: | chloroplast 30S ribosomal protein S20, putative | chr3:5116216-5117412 FORWARD LENGTH=202;; (*ITAG) Solyc07g062870.2.1 (e_value=1e-22) genomic_reference:SL2.40ch07 gene_region:62729882-62733164 transcript_region:SL2.40ch07:62729882..62733164+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S20 (AHRD V1 *-*- RS20_THEEB); contains Interpro domain(s) IPR002583 Ribosomal protein S20 "; GO:0005840 NbS00032814g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.62|0.44|1|0.5|0.33|9|0|731; (*GB) gi|224114201|ref|XP_002316694.1| (e_value=9e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|O81906|B120_ARATH (e_value=3e-156) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=2e-157) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc07g053080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58841966-58845130 transcript_region:SL2.40ch07:58841966..58845130- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00032814g0011.1 protein AED:0.19 eAED:0.19 QI:105|0.66|0.71|1|0.16|0.42|7|1283|419; (*GB) gi|357453599|ref|XP_003597080.1| (e_value=4e-134) Kinase-like protein [Medicago truncatula];; (*SWP) sp|O64477|Y2913_ARATH (e_value=3e-111) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=3e-112) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g053220.1.1 (e_value=6e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00018112g0013.1 protein AED:0.04 eAED:0.04 QI:424|0.8|0.66|1|0.6|0.5|6|462|555; (*GB) gi|350539850|ref|NP_001234548.1| (e_value=6e-156) vsf-1 protein [Solanum lycopersicum];; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=2e-30) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=2e-68) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc04g081190.2.1 (e_value=2e-158) genomic_reference:SL2.40ch04 gene_region:62784623-62788098 transcript_region:SL2.40ch04:62784623..62788098+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00018112g0012.1 protein AED:0.19 eAED:0.19 QI:365|0.76|0.85|1|0.46|0.71|14|395|508; (*GB) gi|255538862|ref|XP_002510496.1| (e_value=0.0) Protein RCC2, putative [Ricinus communis];; (*SWP) sp|Q8BK67|RCC2_MOUSE (e_value=7e-63) Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1;; (*TAIR) AT1G19880.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr1:6900648-6903818 REVERSE LENGTH=538;; (*ITAG) Solyc04g081200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62789119-62797662 transcript_region:SL2.40ch04:62789119..62797662+ go_terms:GO:0005085,GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005085,GO:0008536 NbS00018112g0004.1 protein AED:0.35 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|319718191|gb|ADV59397.1| (e_value=5e-64) GAGA-binding transcriptional activator [Solanum tuberosum];; (*SWP) sp|Q8L999|BPC6_ARATH (e_value=1e-32) Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1;; (*TAIR) AT5G42520.1 (e_value=1e-33) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=342;; (*ITAG) Solyc04g081170.2.1 (e_value=3e-64) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00018112g0003.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|319718191|gb|ADV59397.1| (e_value=2e-86) GAGA-binding transcriptional activator [Solanum tuberosum];; (*SWP) sp|Q5VSA8|BBRD_ORYSJ (e_value=1e-68) Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1;; (*TAIR) AT5G42520.2 (e_value=6e-69) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=338;; (*ITAG) Solyc04g081170.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00020500g0002.1 protein AED:0.54 eAED:1.00 QI:0|0|0|1|0|0|2|0|74 NbS00053355g0003.1 protein AED:0.33 eAED:0.40 QI:0|0.33|0|1|0.66|0.5|4|0|174; (*GB) gi|225453740|ref|XP_002269833.1| (e_value=1e-36) PREDICTED: F-box protein PP2-A13 [Vitis vinifera];; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=3e-35) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=2e-36) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc01g091700.2.1 (e_value=7e-47) genomic_reference:SL2.40ch01 gene_region:77059070-77061042 transcript_region:SL2.40ch01:77059070..77061042+ go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00031484g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|1|1|5|0|318; (*GB) gi|255554957|ref|XP_002518516.1| (e_value=5e-132) beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=2e-113) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61820.3 (e_value=3e-115) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22836707-22838444 FORWARD LENGTH=377;; (*ITAG) Solyc02g080310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39140632-39145281 transcript_region:SL2.40ch02:39140632..39145281+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00005131g0107.1 protein AED:0.16 eAED:0.16 QI:0|1|0.6|1|1|1|5|0|246 NbS00005131g0102.1 protein AED:0.21 eAED:0.21 QI:233|1|1|1|0.71|0.75|8|847|434 NbS00005131g0201.1 protein AED:0.08 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|930 NbS00005131g0210.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0|2|72|71 NbS00005131g0202.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|164 NbS00005131g0212.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|215 NbS00012528g0008.1 protein AED:0.08 eAED:0.08 QI:40|1|0.5|1|0|0|2|115|29 NbS00012528g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.75|1|1|1|8|467|512; (*GB) gi|359473318|ref|XP_002267713.2| (e_value=4e-76) PREDICTED: uncharacterized protein LOC100258808 [Vitis vinifera];; (*TAIR) AT1G24160.2 (e_value=2e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). | chr1:8553669-8555830 REVERSE LENGTH=540;; (*ITAG) Solyc04g005060.2.1 (e_value=5e-159) genomic_reference:SL2.40ch04 gene_region:54395-58347 transcript_region:SL2.40ch04:54395..58347- functional_description:"F3I6.9 protein (AHRD V1 *-*- O48683_ARATH)"; NbS00012528g0007.1 protein AED:0.35 eAED:0.71 QI:56|0|0|1|0|0|3|0|81 NbS00012528g0106.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|354 NbS00009555g0006.1 protein AED:0.25 eAED:0.16 QI:0|0.4|0.33|0.83|0.4|0.66|6|708|338; (*GB) gi|356495960|ref|XP_003516838.1| (e_value=6e-176) PREDICTED: lysine histidine transporter-like 6-like [Glycine max];; (*SWP) sp|Q9C6M2|LHTL6_ARATH (e_value=1e-162) Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1;; (*TAIR) AT1G25530.1 (e_value=9e-164) | Symbols: | Transmembrane amino acid transporter family protein | chr1:8964827-8967391 REVERSE LENGTH=440;; (*ITAG) Solyc05g009700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3896183-3899785 transcript_region:SL2.40ch05:3896183..3899785- go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00009555g0007.1 protein AED:0.24 eAED:0.26 QI:0|0.71|0.66|0.86|0.57|0.73|15|364|755; (*GB) gi|225423909|ref|XP_002278845.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259509 [Vitis vinifera];; (*TAIR) AT1G25540.1 (e_value=3e-167) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE LENGTH=836;; (*ITAG) Solyc12g070100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00005879g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.33|1|0.6|0.5|6|0|256; (*GB) gi|2506931|sp|P80595.2|APY_SOLTU (e_value=3e-109) RecName: Full=Apyrase; AltName: Full=ATP-diphosphatase; AltName: Full=ATP-diphosphohydrolase; AltName: Full=Adenosine diphosphatase; Short=ADPase; Flags: Precursor;; (*SWP) sp|P80595|APY_SOLTU (e_value=1e-110) Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2;; (*TAIR) AT5G18280.1 (e_value=7e-48) | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578;; (*ITAG) Solyc12g098540.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64350912-64356556 transcript_region:SL2.40ch12:64350912..64356556- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00005879g0005.1 protein AED:0.70 eAED:0.96 QI:87|0|0|0.5|0|0|2|0|34 NbS00028380g0001.1 protein AED:0.19 eAED:0.18 QI:0|0|0|1|0|0|2|0|80; (*GB) gi|81301612|ref|YP_398908.1| (e_value=6e-28) Ycf2 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=2e-29) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=5e-27) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-26) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00026775g0007.1 protein AED:0.26 eAED:0.26 QI:347|0.33|0.5|0.75|0|0|4|557|49 NbS00026775g0002.1 protein AED:0.19 eAED:0.19 QI:0|0.25|0.2|0.8|1|1|5|0|341; (*GB) gi|359485668|ref|XP_002274157.2| (e_value=5e-95) PREDICTED: peroxidase 27-like [Vitis vinifera];; (*SWP) sp|Q9LXG3|PER56_ARATH (e_value=2e-86) Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1;; (*TAIR) AT5G15180.1 (e_value=2e-87) | Symbols: | Peroxidase superfamily protein | chr5:4930561-4932211 FORWARD LENGTH=329;; (*ITAG) Solyc08g075830.2.1 (e_value=6e-129) genomic_reference:SL2.40ch08 gene_region:57086913-57088336 transcript_region:SL2.40ch08:57086913..57088336+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00016511g0004.1 protein AED:0.22 eAED:0.23 QI:3|0.33|0|1|0.66|0.75|4|0|445; (*GB) gi|225443922|ref|XP_002278732.1| (e_value=0.0) PREDICTED: probable inositol transporter 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C757|INT2_ARATH (e_value=0.0) Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1;; (*TAIR) AT1G30220.1 (e_value=0.0) | Symbols: ATINT2, INT2 | inositol transporter 2 | chr1:10632957-10635439 REVERSE LENGTH=580;; (*ITAG) Solyc08g048290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:38629155-38632748 transcript_region:SL2.40ch08:38629155..38632748+ go_terms:GO:0005366 functional_description:"Myo-inositol transporter 1 (AHRD V1 *-** C1GD33_PARBD); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366 NbC24412549g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|82; (*ITAG) Solyc10g008560.2.1 (e_value=1e-18) genomic_reference:SL2.40ch10 gene_region:2665397-2673702 transcript_region:SL2.40ch10:2665397..2673702- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C1HAJ3_PARBA); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00056630g0005.1 protein AED:0.03 eAED:0.03 QI:266|0.88|0.7|1|1|1|10|663|1689; (*GB) gi|359481257|ref|XP_002265561.2| (e_value=1e-129) PREDICTED: uncharacterized protein LOC100251663 [Vitis vinifera];; (*SWP) sp|Q5XPJ9|SCAR2_ARATH (e_value=5e-99) Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1;; (*TAIR) AT2G38440.1 (e_value=4e-100) | Symbols: ITB1, SCAR2, DIS3, WAVE4, ATSCAR2 | SCAR homolog 2 | chr2:16095550-16100851 FORWARD LENGTH=1399;; (*ITAG) Solyc09g014980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7373131-7381944 transcript_region:SL2.40ch09:7373131..7381944+ functional_description:"Wiskott-Aldrich syndrome protein family member 2 (AHRD V1 *--- WASF2_HUMAN); contains Interpro domain(s) IPR003124 Actin-binding WH2 "; NbS00009885g0003.1 protein AED:0.39 eAED:0.39 QI:89|1|1|1|1|0.5|2|0|90; (*GB) gi|255536739|ref|XP_002509436.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G28395.4 (e_value=2e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9969817-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc03g006310.2.1 (e_value=8e-39) genomic_reference:SL2.40ch03 gene_region:909634-914330 transcript_region:SL2.40ch03:909634..914330+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023648g0005.1 protein AED:0.28 eAED:0.30 QI:0|0.25|0|0.6|0.5|0.8|5|0|698; (*GB) gi|225424643|ref|XP_002285504.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100242447 [Vitis vinifera];; (*TAIR) AT3G26400.1 (e_value=2e-60) | Symbols: EIF4B1 | eukaryotic translation initiation factor 4B1 | chr3:9666616-9669081 FORWARD LENGTH=532;; (*ITAG) Solyc05g013700.2.1 (e_value=2e-154) genomic_reference:SL2.40ch05 gene_region:6996862-7004096 transcript_region:SL2.40ch05:6996862..7004096- go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 4B (AHRD V1 **** B6TRD2_MAIZE); contains Interpro domain(s) IPR010433 Plant specific eukaryotic initiation factor 4B "; GO:0003743 NbS00013917g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0.33|3|0|273; (*GB) gi|76446110|gb|ABA42922.1| (e_value=6e-119) glyoxal oxidase [Vitis pseudoreticulata];; (*TAIR) AT3G53950.1 (e_value=2e-104) | Symbols: | glyoxal oxidase-related protein | chr3:19975704-19977341 FORWARD LENGTH=545;; (*ITAG) Solyc10g086650.1.1 (e_value=6e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64753489-64755099 transcript_region:SL2.40ch10:64753489..64755099- functional_description:"Glyoxal oxidase (AHRD V1 ***- C8CPQ3_VITVI); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00013917g0003.1 protein AED:0.42 eAED:0.50 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|224138898|ref|XP_002322929.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G53950.1 (e_value=2e-23) | Symbols: | glyoxal oxidase-related protein | chr3:19975704-19977341 FORWARD LENGTH=545;; (*ITAG) Solyc10g086650.1.1 (e_value=7e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64753489-64755099 transcript_region:SL2.40ch10:64753489..64755099- functional_description:"Glyoxal oxidase (AHRD V1 ***- C8CPQ3_VITVI); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00056245g0002.1 protein AED:0.34 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|329; (*GB) gi|359495958|ref|XP_003635122.1| (e_value=6e-75) PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460-like [Vitis vinifera];; (*SWP) sp|Q9FGL1|PP423_ARATH (e_value=8e-51) Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1;; (*TAIR) AT5G47460.1 (e_value=6e-52) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19252463-19254193 REVERSE LENGTH=576;; (*ITAG) Solyc08g078570.1.1 (e_value=3e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59519645-59521489 transcript_region:SL2.40ch08:59519645..59521489- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MP46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00056245g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.71|1|0.5|0.57|7|0|333; (*GB) gi|224074159|ref|XP_002304279.1| (e_value=2e-125) mtn21-like protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=8e-23) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G47470.1 (e_value=9e-121) | Symbols: | Nodulin MtN21 /EamA-like transporter family protein | chr5:19254598-19256378 FORWARD LENGTH=364;; (*ITAG) Solyc08g078580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59523244-59528510 transcript_region:SL2.40ch08:59523244..59528510+ go_terms:GO:0016020,GO:0005743,GO:0005622 functional_description:"Nodulin-like protein (AHRD V1 *-*- Q9FGL0_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020,GO:0005743,GO:0005622 NbS00027106g0001.1 protein AED:0.07 eAED:0.07 QI:322|0.77|1|1|0.88|0.8|10|37|623; (*GB) gi|225459554|ref|XP_002285853.1| (e_value=0.0) PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAP8|LACS9_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1;; (*TAIR) AT1G77590.1 (e_value=0.0) | Symbols: LACS9 | long chain acyl-CoA synthetase 9 | chr1:29148501-29151776 REVERSE LENGTH=691;; (*ITAG) Solyc11g018580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8753165-8759597 transcript_region:SL2.40ch11:8753165..8759597+ go_terms:GO:0008152 functional_description:"Long-chain-fatty-acid--CoA ligase 4 (AHRD V1 ***- C0HA93_SALSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00027106g0007.1 protein AED:0.17 eAED:0.17 QI:222|0.83|0.85|1|1|1|7|287|503; (*GB) gi|374250709|gb|AEY99977.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q38869|CDPK4_ARATH (e_value=0.0) Calcium-dependent protein kinase 4 OS=Arabidopsis thaliana GN=CPK4 PE=1 SV=1;; (*TAIR) AT4G09570.1 (e_value=0.0) | Symbols: CPK4, ATCPK4 | calcium-dependent protein kinase 4 | chr4:6049560-6052184 FORWARD LENGTH=501;; (*ITAG) Solyc11g018610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8769972-8773835 transcript_region:SL2.40ch11:8769972..8773835+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- D7LXA9_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00027106g0015.1 protein AED:0.39 eAED:0.39 QI:92|0.5|0.66|0.66|0.5|0.33|3|0|107; (*GB) gi|676884|dbj|BAA06151.1| (e_value=4e-26) pit2 [Nicotiana tabacum];; (*TAIR) AT1G71950.1 (e_value=5e-25) | Symbols: | Proteinase inhibitor, propeptide | chr1:27080453-27081573 REVERSE LENGTH=136;; (*ITAG) Solyc06g065370.2.1 (e_value=2e-30) genomic_reference:SL2.40ch06 gene_region:37187770-37191057 transcript_region:SL2.40ch06:37187770..37191057+ go_terms:GO:0043086 functional_description:"Subtilase family protein (AHRD V1 **-- D7KTL9_ARALY); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0043086 NbS00027106g0003.1 protein AED:0.26 eAED:0.26 QI:396|1|0.75|1|1|1|4|0|281; (*GB) gi|30681121|ref|NP_192696.3| (e_value=4e-141) SNARE associated Golgi protein [Arabidopsis thaliana];; (*SWP) sp|Q8L586|Y4958_ARATH (e_value=1e-142) Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1;; (*TAIR) AT4G09580.1 (e_value=9e-144) | Symbols: | SNARE associated Golgi protein family | chr4:6052721-6054313 REVERSE LENGTH=287;; (*ITAG) Solyc11g018620.1.1 (e_value=2e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8774648-8778289 transcript_region:SL2.40ch11:8774648..8778289- functional_description:"Transmembrane protein 41B (AHRD V1 **-- TM41B_XENLA); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00000687g0016.1 protein AED:0.20 eAED:0.20 QI:335|1|1|1|0.86|0.83|24|502|879; (*GB) gi|365222934|gb|AEW69819.1| (e_value=0.0) Hop-interacting protein THI129 [Solanum lycopersicum];; (*SWP) sp|Q8L7U5|BSL1_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=2;; (*TAIR) AT4G03080.1 (e_value=0.0) | Symbols: BSL1 | BRI1 suppressor 1 (BSU1)-like 1 | chr4:1359935-1365166 REVERSE LENGTH=881;; (*ITAG) Solyc09g074320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61594259-61607705 transcript_region:SL2.40ch09:61594259..61607705+ go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I9Z0_POPTR); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00000687g0015.1 protein AED:0.26 eAED:0.26 QI:184|0.81|0.83|1|0.72|0.75|12|47|327; (*GB) gi|356511013|ref|XP_003524226.1| (e_value=9e-177) PREDICTED: protein tas-like [Glycine max];; (*SWP) sp|P0A9T5|TAS_SHIFL (e_value=2e-71) Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1;; (*TAIR) AT1G04420.1 (e_value=4e-78) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc09g074310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61586638-61590738 transcript_region:SL2.40ch09:61586638..61590738+ go_terms:GO:0004033 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 **** Q2R0H4_ORYSJ); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbS00000687g0017.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0.5|0.33|3|0|85 NbS00000687g0014.1 protein AED:0.23 eAED:0.23 QI:121|0.84|0.8|1|0.84|0.8|20|239|964; (*GB) gi|296086650|emb|CBI32285.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G03090.2 (e_value=0.0) | Symbols: | sequence-specific DNA binding;sequence-specific DNA binding transcription factors | chr4:1366495-1370910 REVERSE LENGTH=879;; (*ITAG) Solyc09g074330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61608057-61620043 transcript_region:SL2.40ch09:61608057..61620043- go_terms:GO:0006355 functional_description:"NDX1 homeobox protein (Fragment) (AHRD V1 ***- Q9ZRY1_SOYBN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00042881g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.72|0.5|1|0.72|0.75|12|0|470; (*GB) gi|350534724|ref|NP_001234412.1| (e_value=0.0) beta-glucosidase 01 precursor [Solanum lycopersicum];; (*SWP) sp|Q7XKV4|BGL12_ORYSJ (e_value=0.0) Beta-glucosidase 12 OS=Oryza sativa subsp. japonica GN=BGLU12 PE=2 SV=2;; (*TAIR) AT2G44480.1 (e_value=4e-171) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359780-18363001 FORWARD LENGTH=517;; (*ITAG) Solyc01g074040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70611499-70616784 transcript_region:SL2.40ch01:70611499..70616784+ go_terms:GO:0005975 functional_description:"Beta-glucosidase 01 (AHRD V1 ***- B5M9E4_SOLLC); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00042881g0009.1 protein AED:0.33 eAED:0.35 QI:0|0|0|0.2|0.5|0.6|5|0|203; (*GB) gi|225450388|ref|XP_002277408.1| (e_value=1e-55) PREDICTED: beta-glucosidase 12 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84YK7|BGL27_ORYSJ (e_value=9e-49) Beta-glucosidase 27 OS=Oryza sativa subsp. japonica GN=BGLU27 PE=2 SV=1;; (*TAIR) AT2G44480.2 (e_value=5e-42) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18360476-18363001 FORWARD LENGTH=415;; (*ITAG) Solyc01g074040.1.1 (e_value=7e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70611499-70616784 transcript_region:SL2.40ch01:70611499..70616784+ go_terms:GO:0005975 functional_description:"Beta-glucosidase 01 (AHRD V1 ***- B5M9E4_SOLLC); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00012625g0015.1 protein AED:0.21 eAED:0.22 QI:193|0.95|0.95|1|0.7|0.66|21|460|916; (*GB) gi|224140243|ref|XP_002323493.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=3e-13) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1;; (*TAIR) AT2G36720.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15393447-15399189 FORWARD LENGTH=1007;; (*ITAG) Solyc10g083800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62877321-62887944 transcript_region:SL2.40ch10:62877321..62887944+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00012625g0016.1 protein AED:0.29 eAED:0.29 QI:348|0.5|0.44|1|0.75|0.66|9|252|502; (*ITAG) Solyc01g094420.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00012625g0019.1 protein AED:0.07 eAED:0.07 QI:159|1|1|1|0.25|0.2|5|510|100 NbS00012625g0018.1 protein AED:0.24 eAED:0.24 QI:158|0.82|0.72|1|0.94|0.88|18|237|892; (*GB) gi|297739992|emb|CBI30174.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P38094|FLUG_EMENI (e_value=5e-115) Protein fluG OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fluG PE=1 SV=1;; (*TAIR) AT3G53180.1 (e_value=0.0) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62894379-62902328 transcript_region:SL2.40ch10:62894379..62902328- go_terms:GO:0008152,GO:0005524,GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0008152,GO:0005524,GO:0006807,GO:0003824 NbS00012625g0024.1 protein AED:0.28 eAED:0.36 QI:51|0|0|1|0|0|3|0|154; (*GB) gi|297740009|emb|CBI30191.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZQA3|PME15_ARATH (e_value=2e-61) Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1;; (*TAIR) AT2G36710.1 (e_value=2e-62) | Symbols: | Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407;; (*ITAG) Solyc10g083810.1.1 (e_value=4e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62889530-62892035 transcript_region:SL2.40ch10:62889530..62892035+ go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9MTJ5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00012625g0025.1 protein AED:0.17 eAED:0.91 QI:90|0|0|1|0|0|2|75|32 NbS00018625g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|0|0|2|0|62 NbS00029416g0001.1 protein AED:0.29 eAED:0.38 QI:312|0|0|0.33|1|1|3|0|106; (*ITAG) Solyc06g011460.1.1 (e_value=4e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00001723g0005.1 protein AED:0.09 eAED:0.11 QI:0|0.85|0.62|1|1|1|8|0|377; (*GB) gi|224053531|ref|XP_002297859.1| (e_value=1e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C104|GDE1_SCHPO (e_value=2e-40) Glycerophosphodiester phosphodiesterase gde1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gde1 PE=1 SV=1;; (*TAIR) AT3G02040.1 (e_value=2e-142) | Symbols: SRG3 | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361;; (*ITAG) Solyc01g009870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4404419-4408651 transcript_region:SL2.40ch01:4404419..4408651- go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphodiester phosphodiesterase GDE1 (AHRD V1 ***- B2WNF5_PYRTR); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase "; GO:0006629,GO:0006071 NbS00001723g0105.1 protein AED:0.04 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|256 NbS00027647g0007.1 protein AED:0.07 eAED:0.07 QI:203|1|1|1|0.28|0.5|8|389|702; (*GB) gi|6969229|gb|AAF33669.1|AF079871_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=0.0) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc01g095770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78720407-78724016 transcript_region:SL2.40ch01:78720407..78724016- go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00027647g0011.1 protein AED:0.16 eAED:0.17 QI:0|0.9|0.72|1|0.9|0.72|11|0|816; (*GB) gi|297745425|emb|CBI40505.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFQ1|RH31_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2;; (*TAIR) AT5G63630.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25472598-25476402 REVERSE LENGTH=788;; (*ITAG) Solyc01g095740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78698484-78705574 transcript_region:SL2.40ch01:78698484..78705574- go_terms:GO:0003723 functional_description:"ATP-dependent RNA helicase DBP4 (AHRD V1 *-** C1GZM0_PARBA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003723 NbS00027647g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|128 NbS00027647g0009.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|121; (*ITAG) Solyc01g095780.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:78728923-78729535 transcript_region:SL2.40ch01:78728923..78729535- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q9M5C1_TOBAC); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00003786g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.5|0.33|3|548|366; (*GB) gi|225448451|ref|XP_002272995.1| (e_value=0.0) PREDICTED: leucoanthocyanidin dioxygenase [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-72) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT5G05600.1 (e_value=0.0) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc03g096050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51317291-51320454 transcript_region:SL2.40ch03:51317291..51320454+ go_terms:GO:0016706,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-* ACCO1_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0009815 NbS00039398g0005.1 protein AED:0.17 eAED:0.18 QI:0|0.4|0|1|0.8|0.66|6|0|399; (*GB) gi|297744092|emb|CBI37062.3| (e_value=2e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FWX7|AB11B_ARATH (e_value=4e-157) ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1;; (*TAIR) AT1G02520.1 (e_value=3e-158) | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278;; (*ITAG) Solyc11g067310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50130917-50137242 transcript_region:SL2.40ch11:50130917..50137242- go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--- YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00039398g0004.1 protein AED:0.78 eAED:0.78 QI:0|0.5|0|0.66|1|1|3|0|97 NbS00006155g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|224144656|ref|XP_002336168.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT2G44380.1 (e_value=3e-16) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc08g014370.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00028364g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.87|0.96|0.83|0.77|31|0|972; (*GB) gi|224053881|ref|XP_002298026.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P04825|AMPN_ECOLI (e_value=0.0) Aminopeptidase N OS=Escherichia coli (strain K12) GN=pepN PE=1 SV=2;; (*TAIR) AT1G63770.3 (e_value=0.0) | Symbols: | Peptidase M1 family protein | chr1:23657791-23664243 REVERSE LENGTH=987;; (*ITAG) Solyc08g081250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61469375-61478079 transcript_region:SL2.40ch08:61469375..61478079- go_terms:GO:0004222 functional_description:"Aminopeptidase N (AHRD V1 ***- D5C0C8_NITHN); contains Interpro domain(s) IPR012779 Peptidase M1, alanyl aminopeptidase "; GO:0004222 NbS00006043g0015.1 protein AED:0.08 eAED:0.08 QI:63|0.5|0.4|1|0.5|0.4|5|0|713; (*GB) gi|357933561|dbj|BAL15047.1| (e_value=0.0) glutamate receptor 1.2 [Solanum lycopersicum];; (*SWP) sp|O81078|GLR29_ARATH (e_value=6e-95) Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1;; (*TAIR) AT2G29100.1 (e_value=5e-96) | Symbols: ATGLR2.9, GLR2.9 | glutamate receptor 2.9 | chr2:12501092-12504912 REVERSE LENGTH=940;; (*ITAG) Solyc02g077290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36850890-36854827 transcript_region:SL2.40ch02:36850890..36854827+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H2M2_POPTR); contains Interpro domain(s) IPR015683 Glutamate receptor-related "; GO:0005217,GO:0005515 NbS00006043g0017.1 protein AED:0.16 eAED:0.16 QI:244|0.75|0.55|1|0.5|0.44|9|0|607; (*GB) gi|224110256|ref|XP_002333123.1| (e_value=1e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53210.1 (e_value=5e-107) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc02g077270.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36835987-36840323 transcript_region:SL2.40ch02:36835987..36840323- go_terms:GO:0016021,GO:0005509 functional_description:"Calcium ion binding protein (AHRD V1 *-*- B6U1M5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0016021,GO:0005509 NbS00006043g0018.1 protein AED:0.20 eAED:0.20 QI:5|0.87|0.88|1|0.87|0.88|9|483|415; (*GB) gi|225430700|ref|XP_002264259.1| (e_value=7e-160) PREDICTED: GTPase Era-like [Vitis vinifera];; (*SWP) sp|C6E2H7|ERA_GEOSM (e_value=6e-50) GTPase Era OS=Geobacter sp. (strain M21) GN=era PE=3 SV=1;; (*TAIR) AT5G66470.1 (e_value=1e-154) | Symbols: | RNA binding;GTP binding | chr5:26541986-26544302 REVERSE LENGTH=427;; (*ITAG) Solyc02g077280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36842468-36848653 transcript_region:SL2.40ch02:36842468..36848653- go_terms:GO:0003924 functional_description:"GTP-binding protein era homolog (AHRD V1 ***- D0MDG4_RHOM4); contains Interpro domain(s) IPR005662 GTP-binding protein Era "; GO:0003924 NbS00006043g0016.1 protein AED:0.28 eAED:0.28 QI:44|1|1|1|1|1|5|406|314; (*GB) gi|224116948|ref|XP_002317436.1| (e_value=2e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=6e-26) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT3G15050.1 (e_value=1e-68) | Symbols: IQD10 | IQ-domain 10 | chr3:5066879-5067892 REVERSE LENGTH=259;; (*ITAG) Solyc02g077260.2.1 (e_value=2e-153) genomic_reference:SL2.40ch02 gene_region:36828296-36831764 transcript_region:SL2.40ch02:36828296..36831764- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6TIB2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00006043g0113.1 protein AED:0.01 eAED:0.01 QI:202|1|0.66|1|1|1|3|0|350 NbS00006043g0115.1 protein AED:0.14 eAED:0.20 QI:0|0.5|0.33|1|1|1|3|0|185 NbS00006043g0105.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.16|1|1|6|0|159 NbS00006043g0117.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.4|1|0.25|0.2|5|0|376 NbS00006043g0116.1 protein AED:0.16 eAED:0.16 QI:0|1|0.93|1|0.57|0.6|15|299|517 NbS00032320g0004.1 protein AED:0.33 eAED:0.33 QI:206|0.71|1|1|0.14|0.25|8|22|178; (*GB) gi|224137504|ref|XP_002322574.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P38279|RTC2_YEAST (e_value=4e-14) Protein RTC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1;; (*TAIR) AT2G41050.1 (e_value=1e-41) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr2:17123388-17125622 REVERSE LENGTH=376;; (*ITAG) Solyc02g089890.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:46152628-46161078 transcript_region:SL2.40ch02:46152628..46161078- go_terms:GO:0006508,GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *-*- D3NY83_AZOS1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0006508,GO:0044237,GO:0008152 NbS00023471g0004.1 protein AED:0.69 eAED:0.86 QI:0|0|0|0.66|0|0.33|3|0|78 NbS00032858g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|1|0.16|0|7|0|884; (*GB) gi|357933573|dbj|BAL15053.1| (e_value=0.0) glutamate receptor 2.6 [Solanum lycopersicum];; (*SWP) sp|Q9SHV1|GLR22_ARATH (e_value=0.0) Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1;; (*TAIR) AT2G24720.1 (e_value=0.0) | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.2 | chr2:10522783-10525840 REVERSE LENGTH=920;; (*ITAG) Solyc08g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00045520g0014.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0|1|0.5|0.33|3|0|358; (*GB) gi|255577302|ref|XP_002529532.1| (e_value=2e-150) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G77855.1 (e_value=2e-87) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22030.1); Has 120 Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29277244-29278388 REVERSE LENGTH=317;; (*ITAG) Solyc01g104010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84244325-84245487 transcript_region:SL2.40ch01:84244325..84245487- functional_description:"F2E2.8 (AHRD V1 ***- Q9LM58_ARATH)"; NbS00045520g0013.1 protein AED:0.13 eAED:0.13 QI:1469|0.91|0.84|1|0.66|0.46|13|461|406; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=0.0) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=1e-133) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=1e-134) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00045520g0011.1 protein AED:0.11 eAED:0.11 QI:403|0.75|0.8|1|0.75|0.6|5|578|607; (*GB) gi|225447929|ref|XP_002266312.1| (e_value=0.0) PREDICTED: serine hydroxymethyltransferase 1-like [Vitis vinifera];; (*SWP) sp|Q54EW1|GLYC2_DICDI (e_value=0.0) Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1;; (*TAIR) AT1G36370.1 (e_value=0.0) | Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598;; (*ITAG) Solyc01g104000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84236401-84241786 transcript_region:SL2.40ch01:84236401..84241786+ go_terms:GO:0006563,GO:0030170 functional_description:"Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0006563,GO:0030170 NbS00047109g0004.1 protein AED:0.00 eAED:0.00 QI:676|1|1|1|0|0.5|2|790|157; (*GB) gi|225448138|ref|XP_002263444.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100266411 [Vitis vinifera];; (*TAIR) AT1G80160.2 (e_value=2e-38) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151280-30151930 FORWARD LENGTH=141;; (*ITAG) Solyc01g103590.2.1 (e_value=7e-86) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00037688g0006.1 protein AED:0.25 eAED:0.26 QI:0|1|0.5|1|1|1|4|0|558; (*GB) gi|255540103|ref|XP_002511116.1| (e_value=6e-143) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G26890.5 (e_value=1e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9907456-9910463 REVERSE LENGTH=649;; (*ITAG) Solyc03g097710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00037688g0001.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|297734484|emb|CBI15731.3| (e_value=1e-23) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g097710.2.1 (e_value=5e-64) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00027932g0004.1 protein AED:0.01 eAED:0.01 QI:67|1|1|1|1|1|3|129|928; (*GB) gi|8919178|emb|CAB96077.1| (e_value=0.0) alpha-glucosidase [Solanum tuberosum];; (*SWP) sp|Q9S7Y7|XYL1_ARATH (e_value=0.0) Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1;; (*TAIR) AT1G68560.1 (e_value=0.0) | Symbols: ATXYL1, XYL1, TRG1 | alpha-xylosidase 1 | chr1:25734435-25737897 REVERSE LENGTH=915;; (*ITAG) Solyc05g009470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3636010-3643963 transcript_region:SL2.40ch05:3636010..3643963- go_terms:GO:0004558 functional_description:"Alpha-glucosidase (AHRD V1 **** Q9LEC9_SOLTU); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00019583g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.9|0.72|1|1|1|11|0|422; (*GB) gi|225456860|ref|XP_002279764.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AFC2 [Vitis vinifera];; (*SWP) sp|P51567|AFC2_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1;; (*TAIR) AT4G24740.1 (e_value=0.0) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427;; (*ITAG) Solyc03g112050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56639937-56643720 transcript_region:SL2.40ch03:56639937..56643720+ go_terms:GO:0004674,GO:0004715 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0004715 NbS00019583g0004.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|255645965|gb|ACU23471.1| (e_value=2e-26) unknown [Glycine max];; (*SWP) sp|P28186|RAE1C_ARATH (e_value=1e-26) Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1;; (*TAIR) AT3G46060.3 (e_value=9e-28) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00019583g0003.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|1|1|2|0|60 NbS00019583g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|584862|sp|P37119.1|C71A3_SOLME (e_value=5e-66) RecName: Full=Cytochrome P450 71A3; AltName: Full=CYPLXXIA3; AltName: Full=Cytochrome P-450EG3;; (*SWP) sp|P37119|C71A3_SOLME (e_value=2e-67) Cytochrome P450 71A3 (Fragment) OS=Solanum melongena GN=CYP71A3 PE=2 SV=1;; (*TAIR) AT3G48280.1 (e_value=3e-41) | Symbols: CYP71A25 | cytochrome P450, family 71, subfamily A, polypeptide 25 | chr3:17879594-17881164 FORWARD LENGTH=490;; (*ITAG) Solyc03g111950.2.1 (e_value=1e-67) genomic_reference:SL2.40ch03 gene_region:56569356-56571125 transcript_region:SL2.40ch03:56569356..56571125- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014771g0001.1 protein AED:0.33 eAED:0.33 QI:410|0|0.5|1|0|0.5|2|0|129; (*GB) gi|224057529|ref|XP_002299252.1| (e_value=6e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57930.2 (e_value=1e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g078710.1.1 (e_value=3e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59763165-59763572 transcript_region:SL2.40ch10:59763165..59763572- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; NbS00052045g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|636; (*GB) gi|296081530|emb|CBI20053.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZQF1|PP152_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1;; (*TAIR) AT2G15630.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:6814521-6816404 FORWARD LENGTH=627;; (*ITAG) Solyc01g109060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87873769-87876049 transcript_region:SL2.40ch01:87873769..87876049- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005049g0016.1 protein AED:0.25 eAED:0.25 QI:113|0.92|0.71|1|0.30|0.35|14|370|341; (*GB) gi|297738563|emb|CBI27808.3| (e_value=1e-165) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G06005.1 (e_value=5e-152) | Symbols: FIP1 | FRIGIDA interacting protein 1 | chr2:2332583-2336022 FORWARD LENGTH=355;; (*ITAG) Solyc12g009100.1.1 (e_value=1e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2419442-2430753 transcript_region:SL2.40ch12:2419442..2430753- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00005049g0005.1 protein AED:0.26 eAED:0.26 QI:71|0.5|0.85|1|0.83|0.71|7|320|310; (*GB) gi|8347420|dbj|BAA96501.1| (e_value=1e-159) cysteine protease [Nicotiana tabacum];; (*SWP) sp|Q40143|CYSP3_SOLLC (e_value=2e-139) Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1;; (*TAIR) AT5G60360.1 (e_value=1e-129) | Symbols: SAG2, AALP, ALP | aleurain-like protease | chr5:24280044-24282152 FORWARD LENGTH=358;; (*ITAG) Solyc07g041900.2.1 (e_value=1e-140) genomic_reference:SL2.40ch07 gene_region:51828739-51831068 transcript_region:SL2.40ch07:51828739..51831068- go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin L-like cysteine proteinase (AHRD V1 **** A7LJ78_DERVA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0030984,GO:0004197 NbS00005049g0014.1 protein AED:0.15 eAED:0.15 QI:1139|0.78|0.8|1|0.71|0.73|15|644|417; (*GB) gi|359484270|ref|XP_002278055.2| (e_value=0.0) PREDICTED: tubulin--tyrosine ligase-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q3UDE2|TTL12_MOUSE (e_value=6e-66) Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1;; (*TAIR) AT1G77550.1 (e_value=4e-174) | Symbols: | tubulin-tyrosine ligases;tubulin-tyrosine ligases | chr1:29138490-29142965 REVERSE LENGTH=855;; (*ITAG) Solyc07g041870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51737846-51744068 transcript_region:SL2.40ch07:51737846..51744068+ go_terms:GO:0006464 functional_description:"Tubulin--tyrosine ligase-like protein 12 (AHRD V1 ***- B6U4S2_MAIZE); contains Interpro domain(s) IPR004344 Tubulin-tyrosine ligase "; GO:0006464 NbS00014454g0013.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.25|1|1|0.75|4|0|580; (*GB) gi|255564822|ref|XP_002523405.1| (e_value=1e-113) Helicase, putative [Ricinus communis];; (*TAIR) AT3G12810.1 (e_value=6e-79) | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing protein / helicase domain-containing protein | chr3:4065636-4073992 FORWARD LENGTH=2055;; (*ITAG) Solyc03g063210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:31038565-31041734 transcript_region:SL2.40ch03:31038565..31041734- functional_description:"SWR1 complex protein SNF2 family DNA-dependent ATPase (Fragment) (AHRD V1 *--- A9S832_PHYPA)"; NbS00014454g0008.1 protein AED:0.14 eAED:0.14 QI:1786|0.5|0.57|0.85|0.5|0.42|7|498|200; (*GB) gi|297735770|emb|CBI18457.3| (e_value=1e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G31400.1 (e_value=3e-39) | Symbols: CTF7 | damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345;; (*ITAG) Solyc01g007160.2.1 (e_value=6e-62) genomic_reference:SL2.40ch01 gene_region:1728460-1733199 transcript_region:SL2.40ch01:1728460..1733199+ go_terms:GO:0006281 functional_description:"N-acetyltransferase ESCO1 (AHRD V1 **-- B6TTW6_MAIZE); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0006281 NbS00014454g0009.1 protein AED:0.21 eAED:0.21 QI:153|0.93|0.87|0.93|1|0.93|16|0|1529; (*GB) gi|224070615|ref|XP_002303179.1| (e_value=0.0) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q6FK48|SWR1_CANGA (e_value=0.0) Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1;; (*TAIR) AT3G12810.1 (e_value=0.0) | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing protein / helicase domain-containing protein | chr3:4065636-4073992 FORWARD LENGTH=2055;; (*ITAG) Solyc03g063220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:31045758-31063672 transcript_region:SL2.40ch03:31045758..31063672- go_terms:GO:0005524 functional_description:"Helicase SWR1 (AHRD V1 *--- A5DYP3_LODEL); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00021423g0001.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|90; (*ITAG) Solyc06g065790.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021423g0006.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|111 NbS00021423g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|155; (*ITAG) Solyc08g005380.1.1 (e_value=2e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:286490-286957 transcript_region:SL2.40ch08:286490..286957+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013259g0006.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|4|0|245; (*GB) gi|224102107|ref|XP_002312548.1| (e_value=4e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=9e-62) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT1G03070.2 (e_value=5e-74) | Symbols: | Bax inhibitor-1 family protein | chr1:730148-731379 FORWARD LENGTH=247;; (*ITAG) Solyc09g082590.2.1 (e_value=2e-135) genomic_reference:SL2.40ch09 gene_region:63724416-63727258 transcript_region:SL2.40ch09:63724416..63727258- go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6T7B7_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00015593g0009.1 protein AED:0.12 eAED:0.15 QI:180|0.5|0.6|1|0.75|0.8|5|0|327; (*GB) gi|21105736|gb|AAM34767.1|AF509867_1 (e_value=0.0) nam-like protein 4 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-91) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10480.2 (e_value=3e-100) | Symbols: ANAC050, NAC050 | NAC domain containing protein 50 | chr3:3264410-3266781 FORWARD LENGTH=446;; (*ITAG) Solyc11g008010.1.1 (e_value=3e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2211124-2215951 transcript_region:SL2.40ch11:2211124..2215951- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00015593g0010.1 protein AED:0.08 eAED:0.27 QI:0|0|0|1|0|0|2|0|106; (*ITAG) Solyc01g017760.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030550g0016.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.54|1|0.4|0.45|11|0|449; (*GB) gi|255568788|ref|XP_002525365.1| (e_value=2e-91) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G60460.1 (e_value=3e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22275600-22278886 FORWARD LENGTH=493;; (*ITAG) Solyc06g065620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37382750-37391688 transcript_region:SL2.40ch06:37382750..37391688+ functional_description:"F8A5.1 protein (AHRD V1 ***- O22692_ARATH)"; NbS00030550g0014.1 protein AED:0.32 eAED:0.32 QI:294|0.75|0.6|1|0.25|0.4|5|0|381; (*GB) gi|225430169|ref|XP_002284801.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 22 [Vitis vinifera];; (*SWP) sp|Q9SLA1|P2C22_ARATH (e_value=0.0) Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1;; (*TAIR) AT2G25620.1 (e_value=0.0) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc06g065610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37376494-37381443 transcript_region:SL2.40ch06:37376494..37381443+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00030550g0015.1 protein AED:0.67 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|76; (*ITAG) Solyc06g065610.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:37376494-37381443 transcript_region:SL2.40ch06:37376494..37381443+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00025182g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|349; (*GB) gi|147858660|emb|CAN80430.1| (e_value=4e-168) hypothetical protein VITISV_013812 [Vitis vinifera];; (*SWP) sp|Q9SZ83|Y4967_ARATH (e_value=1e-155) Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1;; (*TAIR) AT4G09670.1 (e_value=8e-157) | Symbols: | Oxidoreductase family protein | chr4:6107382-6109049 REVERSE LENGTH=362;; (*ITAG) Solyc04g072240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56836369-56838665 transcript_region:SL2.40ch04:56836369..56838665+ go_terms:GO:0009055,GO:0008746 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7LXC3_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0009055,GO:0008746 NbS00050597g0001.1 protein AED:0.27 eAED:0.27 QI:341|1|1|1|0.81|0.66|12|363|349; (*GB) gi|225435383|ref|XP_002282609.1| (e_value=2e-167) PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera];; (*SWP) sp|Q54P70|Y4757_DICDI (e_value=2e-24) OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2;; (*TAIR) AT5G04250.2 (e_value=3e-94) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc11g069810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51520907-51527993 transcript_region:SL2.40ch11:51520907..51527993- functional_description:"OTU domain containing protein (AHRD V1 *-*- D3B1E5_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00015476g0001.1 protein AED:0.00 eAED:0.00 QI:54|-1|0|1|-1|1|1|0|81 NbS00015476g0013.1 protein AED:0.19 eAED:0.19 QI:335|0.86|0.87|1|0.8|0.75|16|403|609; (*GB) gi|225436934|ref|XP_002275434.1| (e_value=0.0) PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera];; (*SWP) sp|P0CO78|GEM1_CRYNJ (e_value=4e-119) Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1;; (*TAIR) AT3G63150.1 (e_value=0.0) | Symbols: MIRO2, ATCBG | MIRO-related GTP-ase 2 | chr3:23329200-23332692 REVERSE LENGTH=643;; (*ITAG) Solyc09g065130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58595292-58603131 transcript_region:SL2.40ch09:58595292..58603131+ go_terms:GO:0003924 functional_description:"Mitochondrial Rho GTPase 1 (AHRD V1 **** B2WA10_PYRTR); contains Interpro domain(s) IPR013567 EF hand associated, type-2 "; GO:0003924 NbS00015476g0006.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|224085451|ref|XP_002307579.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NMR8|FAF3_ARATH (e_value=4e-24) Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1;; (*TAIR) AT5G19260.1 (e_value=3e-25) | Symbols: | Protein of unknown function (DUF3049) | chr5:6479494-6480360 REVERSE LENGTH=288;; (*ITAG) Solyc09g065140.1.1 (e_value=8e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58660863-58661594 transcript_region:SL2.40ch09:58660863..58661594- functional_description:"Unknown Protein (AHRD V1)"; NbS00015476g0025.1 protein AED:0.17 eAED:0.17 QI:147|0.8|0.72|0.90|1|1|11|0|835; (*GB) gi|225436930|ref|XP_002275196.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256371 [Vitis vinifera];; (*SWP) sp|P40983|YOR6_CALSR (e_value=6e-25) Uncharacterized protein in xynA 3'region (Fragment) OS=Caldicellulosiruptor sp. (strain Rt8B.4) PE=4 SV=1;; (*TAIR) AT1G03160.1 (e_value=0.0) | Symbols: FZL | FZO-like | chr1:761321-766053 FORWARD LENGTH=912;; (*ITAG) Solyc09g065160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58667016-58680192 transcript_region:SL2.40ch09:58667016..58680192- go_terms:GO:0009228,GO:0005525 functional_description:"Dynamin family protein (AHRD V1 *--- D0MDN4_RHOM4); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0009228,GO:0005525 NbS00025779g0019.1 protein AED:0.04 eAED:0.04 QI:234|1|0.75|1|0.33|0.25|4|42|144; (*ITAG) Solyc02g043820.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025779g0018.1 protein AED:0.24 eAED:0.24 QI:241|1|0.88|1|1|1|9|0|693; (*GB) gi|359487356|ref|XP_003633575.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100855398 [Vitis vinifera];; (*SWP) sp|Q9DDY9|PAB2A_XENLA (e_value=4e-16) Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1;; (*TAIR) AT3G12640.1 (e_value=3e-118) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:4014455-4017675 FORWARD LENGTH=638;; (*ITAG) Solyc01g086980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73656971-73667868 transcript_region:SL2.40ch01:73656971..73667868+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *-*- C9S619_VERA1); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00025779g0005.1 protein AED:0.43 eAED:0.77 QI:0|1|0.5|1|0|0.5|2|95|90 NbS00025779g0015.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|271; (*GB) gi|255544214|ref|XP_002513169.1| (e_value=4e-46) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12650.1 (e_value=6e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4017881-4018597 REVERSE LENGTH=238;; (*ITAG) Solyc03g115460.1.1 (e_value=5e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59213018-59213797 transcript_region:SL2.40ch03:59213018..59213797+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025779g0021.1 protein AED:0.45 eAED:0.45 QI:0|0|0.5|0.5|0|0.5|2|90|66 NbS00016968g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|332322102|emb|CCA65997.1| (e_value=5e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g056380.1.1 (e_value=3e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00016968g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|266|659; (*GB) gi|225460745|ref|XP_002268373.1| (e_value=0.0) PREDICTED: ABC transporter G family member 25-like [Vitis vinifera];; (*SWP) sp|Q84TH5|AB25G_ARATH (e_value=0.0) ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1;; (*TAIR) AT1G71960.1 (e_value=0.0) | Symbols: ABCG25, ATABCG25 | ATP-binding casette family G25 | chr1:27082587-27088163 REVERSE LENGTH=662;; (*ITAG) Solyc07g063400.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63093862-63097057 transcript_region:SL2.40ch07:63093862..63097057+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 9 (AHRD V1 ***- AB9G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00008939g0003.1 protein AED:0.08 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|173; (*GB) gi|147852242|emb|CAN80134.1| (e_value=6e-49) hypothetical protein VITISV_012033 [Vitis vinifera];; (*SWP) sp|Q9SFF9|GL17_ARATH (e_value=1e-46) Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1;; (*TAIR) AT3G05950.1 (e_value=1e-47) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc09g090010.2.1 (e_value=6e-76) genomic_reference:SL2.40ch09 gene_region:64931262-64932969 transcript_region:SL2.40ch09:64931262..64932969- go_terms:GO:0050162 functional_description:"Germin-like protein 12 (AHRD V1 ***- C6T5E1_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00008939g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|0.66|1|1|3|0|229; (*GB) gi|225450869|ref|XP_002284212.1| (e_value=3e-67) PREDICTED: germin-like protein subfamily 1 member 13-like [Vitis vinifera];; (*SWP) sp|Q9FIC6|GL117_ARATH (e_value=4e-61) Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1;; (*TAIR) AT5G39150.1 (e_value=3e-62) | Symbols: | RmlC-like cupins superfamily protein | chr5:15670008-15670789 REVERSE LENGTH=221;; (*ITAG) Solyc09g090020.2.1 (e_value=3e-111) genomic_reference:SL2.40ch09 gene_region:64935198-64937192 transcript_region:SL2.40ch09:64935198..64937192- go_terms:GO:0050162 functional_description:"Germin-like protein 5 (AHRD V1 ***- A8QK91_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00046961g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|125; (*ITAG) Solyc07g064210.2.1 (e_value=4e-36) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00027038g0006.1 protein AED:0.28 eAED:0.30 QI:0|0|0.12|1|0.28|0.12|8|238|602; (*GB) gi|22128587|gb|AAM52339.1| (e_value=0.0) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-105) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-104) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001491g0002.1 protein AED:0.25 eAED:0.25 QI:0|1|0.92|1|0.91|0.84|13|238|756; (*GB) gi|225443782|ref|XP_002266057.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Vitis vinifera];; (*SWP) sp|C0LGQ4|MRH1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1;; (*TAIR) AT4G18640.1 (e_value=0.0) | Symbols: MRH1 | Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678;; (*ITAG) Solyc02g021590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13946008-13952021 transcript_region:SL2.40ch02:13946008..13952021+ go_terms:GO:0005515,GO:0006468 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0006468 NbS00001491g0005.1 protein AED:0.33 eAED:0.37 QI:0|0.33|0.5|1|0.66|0.5|4|827|151; (*ITAG) Solyc02g071320.2.1 (e_value=5e-18) genomic_reference:SL2.40ch02 gene_region:35370359-35375355 transcript_region:SL2.40ch02:35370359..35375355- functional_description:"Unknown Protein (AHRD V1)"; NbS00023181g0003.1 protein AED:0.02 eAED:0.02 QI:344|1|1|1|0|0|2|304|419; (*GB) gi|329025152|gb|AEB71559.1| (e_value=0.0) CBL-interacting protein kinase [Solanum chacoense];; (*SWP) sp|Q9LZW4|CIPKE_ARATH (e_value=7e-144) CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1;; (*TAIR) AT5G01820.1 (e_value=5e-145) | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 | serine/threonine protein kinase 1 | chr5:313423-314751 REVERSE LENGTH=442;; (*ITAG) Solyc09g018280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14009433-14010764 transcript_region:SL2.40ch09:14009433..14010764+ go_terms:GO:0004683 functional_description:"Calcium/calmodulin-dependent protein kinase type 1 (AHRD V1 *-** KCC1A_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00038245g0015.1 protein AED:0.03 eAED:0.03 QI:318|0.8|1|1|0.6|0.66|6|134|207; (*GB) gi|255550546|ref|XP_002516323.1| (e_value=2e-82) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q2NKX8|ERC6L_HUMAN (e_value=6e-20) DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1;; (*TAIR) AT5G63950.1 (e_value=9e-69) | Symbols: CHR24 | chromatin remodeling 24 | chr5:25592160-25598405 REVERSE LENGTH=1090;; (*ITAG) Solyc01g068280.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:69804247-69818171 transcript_region:SL2.40ch01:69804247..69818171- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00038245g0014.1 protein AED:0.05 eAED:0.05 QI:221|1|1|1|1|1|9|471|702; (*GB) gi|224096079|ref|XP_002310531.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=2e-73) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT5G63940.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:25588254-25591229 FORWARD LENGTH=705;; (*ITAG) Solyc01g068270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69799290-69803691 transcript_region:SL2.40ch01:69799290..69803691+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00038245g0013.1 protein AED:0.57 eAED:0.57 QI:0|0.16|0|0.42|1|1|7|0|263; (*GB) gi|255554561|ref|XP_002518319.1| (e_value=1e-129) glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=8e-112) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=6e-113) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106350.2.1 (e_value=3e-151) genomic_reference:SL2.40ch01 gene_region:86040020-86047935 transcript_region:SL2.40ch01:86040020..86047935+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00029200g0005.1 protein AED:0.21 eAED:0.22 QI:0|1|0.66|1|1|1|6|0|396; (*GB) gi|225431531|ref|XP_002281774.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase ATXR5 [Vitis vinifera];; (*SWP) sp|Q8VZJ1|ATXR5_ARATH (e_value=4e-153) Histone-lysine N-methyltransferase ATXR5 OS=Arabidopsis thaliana GN=ATXR5 PE=2 SV=1;; (*TAIR) AT5G09790.2 (e_value=9e-165) | Symbols: ATXR5, SDG15 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 | chr5:3039204-3040970 REVERSE LENGTH=379;; (*ITAG) Solyc11g005730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:578504-582486 transcript_region:SL2.40ch11:578504..582486+ go_terms:GO:0008270 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 **-- D8L830_9POAL); contains Interpro domain(s) IPR001214 SET "; GO:0008270 NbS00027791g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.7|0.63|1|0.9|0.81|11|0|1128; (*GB) gi|225463358|ref|XP_002271185.1| (e_value=0.0) PREDICTED: ABC transporter B family member 9-like [Vitis vinifera];; (*SWP) sp|Q9M0M2|AB9B_ARATH (e_value=0.0) ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=2;; (*TAIR) AT4G18050.1 (e_value=0.0) | Symbols: PGP9 | P-glycoprotein 9 | chr4:10022205-10027280 FORWARD LENGTH=1236;; (*ITAG) Solyc03g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:581458-589104 transcript_region:SL2.40ch03:581458..589104+ go_terms:GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_DESPS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00027791g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.4|1|0.5|0.6|5|317|168; (*GB) gi|385653681|emb|CBL94669.1| (e_value=8e-76) eukaryotic translation initiation factor 4E, partial [Capsicum chinense];; (*SWP) sp|O23252|IF4E1_ARATH (e_value=5e-58) Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana GN=EIF4E1 PE=2 SV=1;; (*TAIR) AT4G18040.1 (e_value=4e-59) | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryotic translation initiation factor 4E | chr4:10016724-10018151 REVERSE LENGTH=235;; (*ITAG) Solyc03g005870.2.1 (e_value=3e-76) genomic_reference:SL2.40ch03 gene_region:590058-593520 transcript_region:SL2.40ch03:590058..593520+ go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- Q199B8_SOLLC); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00043998g0001.1 protein AED:0.49 eAED:0.49 QI:0|1|0.5|1|1|0|2|0|63; (*ITAG) Solyc07g005430.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:331099-334735 transcript_region:SL2.40ch07:331099..334735- functional_description:"Unknown Protein (AHRD V1)"; NbS00053601g0006.1 protein AED:0.46 eAED:0.47 QI:0|0|0|0.5|0|0.5|2|0|173; (*GB) gi|297739974|emb|CBI30156.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=2e-70) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc09g008370.1.1 (e_value=6e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1835385-1837232 transcript_region:SL2.40ch09:1835385..1837232+ functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00053601g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|4|0|798; (*GB) gi|359481931|ref|XP_002268663.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248651 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc09g008370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1835385-1837232 transcript_region:SL2.40ch09:1835385..1837232+ functional_description:"Nodulin-like protein (Fragment) (AHRD V1 ***- O81121_ARATH); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00025771g0014.1 protein AED:0.08 eAED:0.08 QI:5|1|1|1|0.66|0.71|7|728|482; (*GB) gi|225426168|ref|XP_002278930.1| (e_value=0.0) PREDICTED: probable polygalacturonase [Vitis vinifera];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=0.0) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23500.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12264640-12267074 FORWARD LENGTH=495;; (*ITAG) Solyc08g081480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61693642-61697010 transcript_region:SL2.40ch08:61693642..61697010+ go_terms:GO:0005975 functional_description:"Polygalacturonase-like protein (AHRD V1 **-- Q84LI7_FRAAN); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00025771g0009.1 protein AED:0.05 eAED:0.05 QI:230|1|1|1|0.8|0.83|6|306|380; (*GB) gi|21165527|dbj|BAB93531.1| (e_value=0.0) mitogen-activated protein kinase [Solanum tuberosum];; (*SWP) sp|Q39024|MPK4_ARATH (e_value=0.0) Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2;; (*TAIR) AT4G01370.1 (e_value=0.0) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc08g081490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61696989-61700296 transcript_region:SL2.40ch08:61696989..61700296- go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** Q8LT16_SOLTU); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00025771g0005.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.33|1|1|3|0|120; (*GB) gi|225426154|ref|XP_002278542.1| (e_value=2e-34) PREDICTED: uncharacterized protein LOC100258716 [Vitis vinifera];; (*TAIR) AT1G01490.2 (e_value=1e-24) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc01g095070.2.1 (e_value=9e-23) genomic_reference:SL2.40ch01 gene_region:78197040-78199740 transcript_region:SL2.40ch01:78197040..78199740+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00025771g0010.1 protein AED:0.20 eAED:0.20 QI:224|0.88|0.89|1|0.66|0.68|19|372|500; (*GB) gi|350536875|ref|NP_001234013.1| (e_value=0.0) monodehydroascorbate reductase [Solanum lycopersicum];; (*SWP) sp|P92947|MDARP_ARATH (e_value=0.0) Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3;; (*TAIR) AT1G63940.2 (e_value=0.0) | Symbols: MDAR6 | monodehydroascorbate reductase 6 | chr1:23730095-23733534 FORWARD LENGTH=493;; (*ITAG) Solyc08g081530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61722769-61729291 transcript_region:SL2.40ch08:61722769..61729291+ go_terms:GO:0005524 functional_description:"Reductase (AHRD V1 ***- B5HVX9_9ACTO); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0005524 NbS00044264g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.8|0.63|1|0.7|0.81|11|0|1087; (*GB) gi|225434215|ref|XP_002275762.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase 12 [Vitis vinifera];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT2G43900.1 (e_value=0.0) | Symbols: | Endonuclease/exonuclease/phosphatase family protein | chr2:18178801-18183823 REVERSE LENGTH=1316;; (*ITAG) Solyc08g014580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4700365-4706701 transcript_region:SL2.40ch08:4700365..4706701- go_terms:GO:0004437 functional_description:"Inositol-1,4,5-trisphosphate 5-phosphatase 1 (AHRD V1 *-** SYJ1_SCHPO); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00044264g0002.1 protein AED:0.15 eAED:0.15 QI:360|0.5|0.66|1|0.5|0.66|3|0|519; (*GB) gi|359478231|ref|XP_002279889.2| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=5e-120) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc08g014570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4696885-4699796 transcript_region:SL2.40ch08:4696885..4699796+ go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00009325g0007.1 protein AED:0.08 eAED:0.08 QI:688|1|1|1|0.16|0.14|7|114|92; (*GB) gi|255582765|ref|XP_002532159.1| (e_value=2e-28) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q8GWK7|BEE3_ARATH (e_value=6e-23) Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1;; (*TAIR) AT1G73830.1 (e_value=5e-24) | Symbols: BEE3 | BR enhanced expression 3 | chr1:27760027-27761346 FORWARD LENGTH=261;; (*ITAG) Solyc12g036470.1.1 (e_value=7e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31329027-31331264 transcript_region:SL2.40ch12:31329027..31331264+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00009325g0008.1 protein AED:0.13 eAED:0.13 QI:270|0.75|1|1|0.75|0.6|5|427|154; (*GB) gi|76160947|gb|ABA40437.1| (e_value=1e-91) 40S ribosomal protein S7-like protein [Solanum tuberosum];; (*SWP) sp|Q9C514|RS71_ARATH (e_value=2e-83) 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=1e-84) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc06g069090.2.1 (e_value=3e-94) genomic_reference:SL2.40ch06 gene_region:39269885-39272377 transcript_region:SL2.40ch06:39269885..39272377- go_terms:GO:0005840 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0005840 NbS00009325g0009.1 protein AED:0.19 eAED:0.19 QI:137|1|0.85|1|0.5|0.85|7|456|383; (*GB) gi|224121298|ref|XP_002318548.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73840.1 (e_value=6e-46) | Symbols: ESP1 | hydroxyproline-rich glycoprotein family protein | chr1:27763937-27766328 REVERSE LENGTH=388;; (*ITAG) Solyc03g119460.2.1 (e_value=5e-59) genomic_reference:SL2.40ch03 gene_region:62122428-62126103 transcript_region:SL2.40ch03:62122428..62126103- functional_description:"Cleavage stimulation factor like protein (AHRD V1 ***- Q9M9G6_ARATH)"; NbS00010943g0010.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|224127532|ref|XP_002329301.1| (e_value=3e-23) nbs-lrr resistance protein [Populus trichocarpa]; NbS00010943g0012.1 protein AED:0.31 eAED:0.44 QI:0|0|0|1|0|0|2|0|95; (*GB) gi|147771994|emb|CAN69057.1| (e_value=2e-38) hypothetical protein VITISV_022967 [Vitis vinifera];; (*SWP) sp|Q7Z7K6|CENPV_HUMAN (e_value=4e-21) Centromere protein V OS=Homo sapiens GN=CENPV PE=1 SV=1;; (*TAIR) AT5G16940.2 (e_value=3e-39) | Symbols: | carbon-sulfur lyases | chr5:5571797-5572204 REVERSE LENGTH=135;; (*ITAG) Solyc11g011450.1.1 (e_value=5e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4513091-4513516 transcript_region:SL2.40ch11:4513091..4513516+ go_terms:GO:0008152 functional_description:"Glutathione-dependent formaldehyde-activating GFA (AHRD V1 ***- B7K8C4_CYAP7); contains Interpro domain(s) IPR006913 Glutathione-dependent formaldehyde-activating, GFA "; GO:0008152 NbS00010943g0013.1 protein AED:0.26 eAED:0.89 QI:24|0|0|1|0|0|3|207|13 NbS00036291g0004.1 protein AED:0.08 eAED:0.08 QI:392|0.85|0.75|1|0.85|0.75|8|0|460; (*GB) gi|225426651|ref|XP_002281251.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242743 [Vitis vinifera];; (*TAIR) AT1G12420.1 (e_value=0.0) | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226673-4228917 REVERSE LENGTH=441;; (*ITAG) Solyc08g079650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60298413-60301319 transcript_region:SL2.40ch08:60298413..60301319- go_terms:GO:0008152 functional_description:"ACT domain containing protein expressed (AHRD V1 **-- Q10P43_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00024656g0004.1 protein AED:0.01 eAED:0.01 QI:98|0.66|0.75|1|0.66|0.5|4|892|870; (*GB) gi|359472612|ref|XP_002280971.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268019 [Vitis vinifera];; (*TAIR) AT1G70750.1 (e_value=2e-72) | Symbols: | Protein of unknown function, DUF593 | chr1:26680728-26683147 REVERSE LENGTH=749;; (*ITAG) Solyc04g007870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1544722-1548298 transcript_region:SL2.40ch04:1544722..1548298+ functional_description:"IFA-binding protein (AHRD V1 *--- Q9ZTZ4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00024656g0012.1 protein AED:0.27 eAED:0.30 QI:166|0.8|0.81|1|0.86|0.87|16|0|641; (*GB) gi|365222878|gb|AEW69791.1| (e_value=0.0) Hop-interacting protein THI028 [Solanum lycopersicum];; (*SWP) sp|Q8LBH2|CAP8_ARATH (e_value=0.0) Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2;; (*TAIR) AT2G01600.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr2:268975-272356 FORWARD LENGTH=571;; (*ITAG) Solyc04g007860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1532848-1539431 transcript_region:SL2.40ch04:1532848..1539431+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00024656g0014.1 protein AED:0.08 eAED:0.08 QI:223|1|0.87|1|0.42|0.37|8|0|296; (*GB) gi|359474781|ref|XP_002280163.2| (e_value=2e-115) PREDICTED: protein BCCIP homolog [Vitis vinifera];; (*SWP) sp|O64885|BCCIP_ARATH (e_value=2e-91) Protein BCCIP homolog OS=Arabidopsis thaliana GN=At2g44510 PE=1 SV=2;; (*TAIR) AT2G44510.1 (e_value=1e-92) | Symbols: | CDK inhibitor P21 binding protein | chr2:18377411-18379030 FORWARD LENGTH=326;; (*ITAG) Solyc04g007850.2.1 (e_value=5e-151) genomic_reference:SL2.40ch04 gene_region:1518553-1521840 transcript_region:SL2.40ch04:1518553..1521840- functional_description:"BCCIP homolog (AHRD V1 **-- C1BJX3_OSMMO)"; NbS00026906g0005.1 protein AED:0.09 eAED:0.09 QI:189|0.92|0.86|1|0.92|0.86|15|328|577; (*GB) gi|147784740|emb|CAN74796.1| (e_value=0.0) hypothetical protein VITISV_000290 [Vitis vinifera];; (*SWP) sp|Q3T0K2|TCPG_BOVIN (e_value=0.0) T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1;; (*TAIR) AT5G26360.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00001357g0001.1 protein AED:0.03 eAED:0.03 QI:0|0.64|0.53|1|1|1|15|0|1614; (*GB) gi|224138596|ref|XP_002326642.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6BCB4|SC16B_RABIT (e_value=2e-26) Protein transport protein Sec16B OS=Oryctolagus cuniculus GN=SEC16B PE=2 SV=1;; (*TAIR) AT5G47490.1 (e_value=0.0) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1919118-1928036 transcript_region:SL2.40ch08:1919118..1928036- go_terms:GO:0032259 functional_description:"COPII coat assembly protein SEC16 (AHRD V1 *-*- C5FKS9_NANOT)"; GO:0032259 NbS00001357g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|225440183|ref|XP_002278250.1| (e_value=4e-56) PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera];; (*SWP) sp|O09053|WRN_MOUSE (e_value=2e-15) Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3;; (*TAIR) AT3G12410.1 (e_value=3e-27) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc08g007350.1.1 (e_value=7e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00055607g0001.1 protein AED:0.24 eAED:0.24 QI:133|0.66|0.5|1|1|1|4|361|222; (*GB) gi|40748265|gb|AAR89617.1| (e_value=5e-117) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|P51427|RS52_ARATH (e_value=1e-109) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=1e-110) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc11g042610.1.1 (e_value=3e-128) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:32735585-32737640 transcript_region:SL2.40ch11:32735585..32737640+ go_terms:GO:0005840,GO:0015935 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00055607g0005.1 protein AED:0.34 eAED:0.34 QI:413|0.75|0.8|1|0.75|0.8|5|197|236; (*GB) gi|255574237|ref|XP_002528033.1| (e_value=1e-61) protein transporter, putative [Ricinus communis];; (*TAIR) AT1G71480.1 (e_value=1e-54) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr1:26932079-26933086 FORWARD LENGTH=216;; (*ITAG) Solyc11g042620.1.1 (e_value=3e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32758095-32768631 transcript_region:SL2.40ch11:32758095..32768631+ functional_description:"Nuclear transport factor 2 (NTF2)-like protein (AHRD V1 ***- Q67TV5_ORYSJ); contains Interpro domain(s) IPR009959 Protein of unknown function DUF1486 "; NbS00037322g0005.1 protein AED:0.28 eAED:0.31 QI:11|0|0|1|0|0|2|0|291; (*GB) gi|359485621|ref|XP_003633297.1| (e_value=8e-59) PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera];; (*SWP) sp|Q9SY75|PPR30_ARATH (e_value=5e-56) Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1;; (*TAIR) AT1G10330.1 (e_value=4e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:3388747-3390150 FORWARD LENGTH=467;; (*ITAG) Solyc01g005790.1.1 (e_value=1e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:505584-506960 transcript_region:SL2.40ch01:505584..506960- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KKP4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022525g0113.1 protein AED:0.18 eAED:0.18 QI:189|0.87|0.77|1|0.75|0.66|9|554|335 NbS00022525g0102.1 protein AED:0.10 eAED:0.13 QI:0|0.25|0|1|1|1|5|0|699 NbS00022525g0107.1 protein AED:0.61 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|72 NbS00013832g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|86 NbS00047330g0004.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|357117719|ref|XP_003560610.1| (e_value=8e-14) PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon];; (*ITAG) Solyc09g061850.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56131655-56132336 transcript_region:SL2.40ch09:56131655..56132336- functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00047330g0003.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|66; (*ITAG) Solyc09g020120.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:18455058-18455495 transcript_region:SL2.40ch09:18455058..18455495+ functional_description:"Far-red impaired response protein-like (AHRD V1 **-- Q67IU6_ORYSJ)"; NbS00047330g0104.1 protein AED:0.10 eAED:0.11 QI:68|0|0.5|1|1|1|2|0|272 NbC25181938g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|93; (*GB) gi|225436460|ref|XP_002274821.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100253409 [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=3e-41) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc11g066380.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49235503-49238383 transcript_region:SL2.40ch11:49235503..49238383+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00007201g0014.1 protein AED:0.41 eAED:0.49 QI:332|0|0.12|0.62|0.71|0.75|8|0|318; (*ITAG) Solyc01g081100.1.1 (e_value=7e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72947158-72948750 transcript_region:SL2.40ch01:72947158..72948750- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00007201g0016.1 protein AED:0.36 eAED:0.38 QI:27|0.7|0.81|1|0.6|0.54|11|582|379; (*GB) gi|145338065|ref|NP_187006.2| (e_value=1e-72) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G03560.1 (e_value=3e-75) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:853153-856486 REVERSE LENGTH=521;; (*ITAG) Solyc10g039430.1.1 (e_value=2e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21765574-21776202 transcript_region:SL2.40ch10:21765574..21776202- functional_description:"Unknown Protein (AHRD V1)"; NbS00007201g0015.1 protein AED:0.41 eAED:0.41 QI:183|0.75|0.6|1|0|0.6|5|0|155; (*GB) gi|255566026|ref|XP_002524001.1| (e_value=8e-67) calcium ion binding protein, putative [Ricinus communis];; (*TAIR) AT1G64850.1 (e_value=3e-61) | Symbols: | Calcium-binding EF hand family protein | chr1:24096548-24097574 REVERSE LENGTH=162;; (*ITAG) Solyc01g081190.2.1 (e_value=1e-73) genomic_reference:SL2.40ch01 gene_region:72994229-72995987 transcript_region:SL2.40ch01:72994229..72995987+ go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 **** D7KZ13_ARALY); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00007201g0003.1 protein AED:0.69 eAED:0.84 QI:0|0|0|0.25|1|1|8|0|244; (*GB) gi|297744804|emb|CBI38072.3| (e_value=4e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G03560.1 (e_value=3e-43) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:853153-856486 REVERSE LENGTH=521;; (*ITAG) Solyc02g063050.2.1 (e_value=1e-17) genomic_reference:SL2.40ch02 gene_region:29660810-29673796 transcript_region:SL2.40ch02:29660810..29673796+ functional_description:"Os05g0100900 protein (Fragment) (AHRD V1 *-*- Q0DLI2_ORYSJ)"; NbS00014723g0016.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|270; (*GB) gi|357453527|ref|XP_003597041.1| (e_value=8e-43) Blue copper protein [Medicago truncatula];; (*SWP) sp|Q41001|BCP_PEA (e_value=2e-20) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G32300.1 (e_value=3e-32) | Symbols: UCC1 | uclacyanin 1 | chr2:13722510-13723464 FORWARD LENGTH=261;; (*ITAG) Solyc07g052660.1.1 (e_value=1e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58437978-58438899 transcript_region:SL2.40ch07:58437978..58438899+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00014723g0015.1 protein AED:0.15 eAED:0.15 QI:169|0.8|0.66|1|0.8|0.66|6|409|946; (*GB) gi|255549331|ref|XP_002515719.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT1G05280.1 (e_value=1e-152) | Symbols: | Protein of unknown function (DUF604) | chr1:1535444-1537414 REVERSE LENGTH=461;; (*ITAG) Solyc07g052650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58433226-58435409 transcript_region:SL2.40ch07:58433226..58435409+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00014723g0021.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|152; (*GB) gi|297739325|emb|CBI28976.3| (e_value=4e-78) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=2e-62) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=1e-63) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc07g052670.2.1 (e_value=3e-96) genomic_reference:SL2.40ch07 gene_region:58439470-58444048 transcript_region:SL2.40ch07:58439470..58444048- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014623g0002.1 protein AED:0.18 eAED:0.18 QI:344|0.5|0.66|1|0.5|0.33|3|157|152; (*GB) gi|351728007|ref|NP_001237692.1| (e_value=1e-23) uncharacterized protein LOC100306366 precursor [Glycine max];; (*SWP) sp|Q9LFT5|EPFL1_ARATH (e_value=5e-19) EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=2 SV=1;; (*TAIR) AT5G10310.1 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3241666-3242127 REVERSE LENGTH=122;; (*ITAG) Solyc11g009040.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3166921-3168358 transcript_region:SL2.40ch11:3166921..3168358- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 1 (AHRD V1 *-*- EPFL1_ARATH)"; NbS00028718g0001.1 protein AED:0.17 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|128; (*GB) gi|76160947|gb|ABA40437.1| (e_value=3e-43) 40S ribosomal protein S7-like protein [Solanum tuberosum];; (*SWP) sp|Q9C514|RS71_ARATH (e_value=1e-41) 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=7e-43) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc06g069090.2.1 (e_value=6e-46) genomic_reference:SL2.40ch06 gene_region:39269885-39272377 transcript_region:SL2.40ch06:39269885..39272377- go_terms:GO:0005840 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0005840 NbS00018381g0010.1 protein AED:0.03 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|324; (*GB) gi|78191448|gb|ABB29945.1| (e_value=0.0) ADP/ATP translocator-like [Solanum tuberosum];; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=2e-156) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00018381g0003.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|224092109|ref|XP_002309476.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT1G54200.1 (e_value=1e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). | chr1:20235855-20236955 FORWARD LENGTH=366;; (*ITAG) Solyc08g062180.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:47848158-47849321 transcript_region:SL2.40ch08:47848158..47849321- functional_description:"Unknown Protein (AHRD V1)"; NbS00018381g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|1|1|1|5|0|400; (*GB) gi|224092105|ref|XP_002309475.1| (e_value=3e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7T6Y2|YR831_MIMIV (e_value=1e-39) Putative serine/threonine-protein kinase/receptor R831 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R831 PE=4 SV=2;; (*TAIR) AT4G38470.1 (e_value=2e-46) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc08g062140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:47692672-47697995 transcript_region:SL2.40ch08:47692672..47697995- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00037652g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.75|1|0.57|0.62|8|115|257; (*GB) gi|297736221|emb|CBI24859.3| (e_value=6e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|P74516|TRML_SYNY3 (e_value=9e-43) Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1;; (*TAIR) AT5G26880.2 (e_value=5e-107) | Symbols: | AGAMOUS-like 26 | chr5:9457950-9459190 REVERSE LENGTH=263;; (*ITAG) Solyc01g086900.2.1 (e_value=4e-151) genomic_reference:SL2.40ch01 gene_region:73577959-73585260 transcript_region:SL2.40ch01:73577959..73585260+ go_terms:GO:0006396 functional_description:"RNA methyltransferase TrmH group 2 (AHRD V1 *-*- Q3M884_ANAVT); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00012937g0014.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.66|0.4|0.5|6|0|868; (*GB) gi|225470299|ref|XP_002266405.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253287 [Vitis vinifera];; (*TAIR) AT1G12380.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:4214499-4216880 REVERSE LENGTH=793;; (*ITAG) Solyc08g079550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60220573-60223038 transcript_region:SL2.40ch08:60220573..60223038- functional_description:"HAT family dimerisation domain containing protein (AHRD V1 *-*- Q2QMZ1_ORYSJ)"; NbS00012937g0012.1 protein AED:0.18 eAED:0.18 QI:158|0.87|0.88|1|0.87|0.88|9|230|474; (*GB) gi|225470301|ref|XP_002266483.1| (e_value=0.0) PREDICTED: deoxyribodipyrimidine photo-lyase-like [Vitis vinifera];; (*SWP) sp|Q9SB00|PHR_ARATH (e_value=0.0) Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 PE=2 SV=1;; (*TAIR) AT1G12370.2 (e_value=0.0) | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206500-4208842 REVERSE LENGTH=496;; (*ITAG) Solyc08g079530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60206477-60209995 transcript_region:SL2.40ch08:60206477..60209995- go_terms:GO:0003913 functional_description:"Deoxyribodipyrimidine photolyase (AHRD V1 **** D6SS50_9DELT); contains Interpro domain(s) IPR008148 DNA photolyase, class 2 "; GO:0003913 NbS00012937g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.90|0.75|1|0.90|0.75|12|0|426; (*GB) gi|225448938|ref|XP_002272338.1| (e_value=0.0) PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera];; (*SWP) sp|Q9C5X3|KEULE_ARATH (e_value=0.0) SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2;; (*TAIR) AT1G12360.1 (e_value=0.0) | Symbols: KEU | Sec1/munc18-like (SM) proteins superfamily | chr1:4201172-4206144 FORWARD LENGTH=666;; (*ITAG) Solyc08g079520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60189768-60206202 transcript_region:SL2.40ch08:60189768..60206202+ go_terms:GO:0017075 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0017075 NbS00006110g0007.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.8|0.25|0.4|5|0|204; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-50) hypothetical protein [Nicotiana tabacum]; NbS00046064g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0.33|1|0.5|0.66|3|0|311; (*GB) gi|255549070|ref|XP_002515591.1| (e_value=2e-158) Inner membrane protein yrbE, putative [Ricinus communis];; (*SWP) sp|Q8L4R0|TGD1_ARATH (e_value=9e-159) Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1;; (*TAIR) AT1G19800.1 (e_value=7e-160) | Symbols: TGD1 | trigalactosyldiacylglycerol 1 | chr1:6846812-6847954 FORWARD LENGTH=350;; (*ITAG) Solyc01g100250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82087534-82089060 transcript_region:SL2.40ch01:82087534..82089060+ functional_description:"ABC transporter permease protein (AHRD V1 ***- Q08TD1_STIAU); contains Interpro domain(s) IPR003453 Protein of unknown function DUF140 "; NbS00046064g0002.1 protein AED:0.43 eAED:0.67 QI:0|0|0|1|1|1|4|0|90 NbS00051991g0005.1 protein AED:0.11 eAED:0.11 QI:341|0.87|0.88|1|1|1|9|310|518; (*GB) gi|57920902|gb|AAS90324.2| (e_value=0.0) 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=4e-143) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=3e-144) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc10g038080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:19375389-19384293 transcript_region:SL2.40ch10:19375389..19384293- go_terms:GO:0008152,GO:0005737,GO:0003855 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I "; GO:0008152,GO:0005737,GO:0003855 NbS00023242g0013.1 protein AED:0.26 eAED:0.26 QI:29|1|0.83|1|0.8|0.83|6|4|341; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=4e-160) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*TAIR) AT5G05680.1 (e_value=2e-136) | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810;; (*ITAG) Solyc11g008110.1.1 (e_value=6e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2307636-2318179 transcript_region:SL2.40ch11:2307636..2318179+ functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 **-- Q9FFK6_ARATH)"; NbS00023242g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|152; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=4e-30) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*TAIR) AT5G05680.1 (e_value=2e-24) | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810;; (*ITAG) Solyc11g020200.1.1 (e_value=3e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10415680-10417665 transcript_region:SL2.40ch11:10415680..10417665+ functional_description:"Nuclear pore complex protein-related protein (Fragment) (AHRD V1 ***- Q45NJ5_MEDSA)"; NbS00023242g0014.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.85|0.75|8|494|483; (*GB) gi|45260636|emb|CAD27417.1| (e_value=0.0) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|Q42569|C90A1_ARATH (e_value=0.0) Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1;; (*TAIR) AT5G05690.1 (e_value=0.0) | Symbols: CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1 | Cytochrome P450 superfamily protein | chr5:1702907-1706705 REVERSE LENGTH=472;; (*ITAG) Solyc06g051750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31793440-31800469 transcript_region:SL2.40ch06:31793440..31800469- go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00057278g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0|1|0.33|0.75|4|0|654; (*GB) gi|359490529|ref|XP_002267968.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263793 [Vitis vinifera];; (*SWP) sp|Q9QYI4|DJB12_MOUSE (e_value=1e-13) DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2;; (*TAIR) AT5G53150.1 (e_value=9e-130) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726;; (*ITAG) Solyc01g044270.2.1 (e_value=9e-128) genomic_reference:SL2.40ch01 gene_region:38117113-38120227 transcript_region:SL2.40ch01:38117113..38120227+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00020757g0009.1 protein AED:0.09 eAED:0.09 QI:28|0.66|0.75|1|0.33|0.25|4|0|304; (*GB) gi|225464966|ref|XP_002276360.1| (e_value=6e-124) PREDICTED: uncharacterized protein LOC100253478 [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=1e-108) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009480.2.1 (e_value=4e-157) genomic_reference:SL2.40ch01 gene_region:3702854-3706348 transcript_region:SL2.40ch01:3702854..3706348- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00020757g0010.1 protein AED:0.14 eAED:0.28 QI:0|0|0|1|0|0.14|7|0|225; (*GB) gi|108710656|gb|ABF98451.1| (e_value=3e-57) Oxysterol-binding protein, expressed [Oryza sativa Japonica Group];; (*SWP) sp|Q8L751|ORP1C_ARATH (e_value=1e-51) Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1;; (*TAIR) AT4G08180.1 (e_value=1e-52) | Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=814;; (*ITAG) Solyc12g010510.1.1 (e_value=1e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3512180-3515458 transcript_region:SL2.40ch12:3512180..3515458- go_terms:GO:0008202 functional_description:"Oxysterol-binding protein (AHRD V1 ***- A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008202 NbS00031559g0011.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0.66|1|0.5|0.66|3|430|141; (*GB) gi|357125783|ref|XP_003564569.1| (e_value=2e-87) PREDICTED: 40S ribosomal protein S15a-1-like [Brachypodium distachyon];; (*SWP) sp|P42798|R15A1_ARATH (e_value=7e-89) 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2;; (*TAIR) AT5G59850.1 (e_value=5e-90) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc03g121370.2.1 (e_value=2e-41) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00031559g0010.1 protein AED:0.05 eAED:0.05 QI:35|1|1|1|0.66|0.57|7|141|615; (*GB) gi|350537985|ref|NP_001233809.1| (e_value=0.0) monoterpene synthase 2 [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=0.0) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25830.1 (e_value=1e-170) | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600;; (*ITAG) Solyc01g105880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00046285g0006.1 protein AED:0.29 eAED:0.29 QI:50|0.91|0.84|1|0.75|0.69|13|0|373; (*GB) gi|225457961|ref|XP_002275256.1| (e_value=0.0) PREDICTED: BRCA1-A complex subunit BRE [Vitis vinifera];; (*SWP) sp|Q6DJ78|BRE_XENTR (e_value=6e-31) BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1;; (*TAIR) AT5G42470.1 (e_value=1e-158) | Symbols: | CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16982365-16984738 FORWARD LENGTH=382;; (*ITAG) Solyc04g081500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63039981-63045663 transcript_region:SL2.40ch04:63039981..63045663- go_terms:GO:0031593,GO:0005164 functional_description:"BRCA1-A complex subunit BRE (AHRD V1 ***- BRE_XENTR); contains Interpro domain(s) IPR010358 Brain and reproductive organ-expressed "; GO:0031593,GO:0005164 NbS00008458g0010.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.25|1|1|4|0|145 NbS00008458g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|193527444|gb|ACF19787.1| (e_value=6e-164) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-12) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=3e-13) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00008458g0031.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|0.5|4|0|429; (*GB) gi|255540805|ref|XP_002511467.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=1e-180) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008458g0029.1 protein AED:0.20 eAED:0.20 QI:188|1|1|1|1|1|3|299|90; (*GB) gi|4530585|gb|AAD22104.1| (e_value=2e-46) B12D protein [Ipomoea batatas];; (*TAIR) AT3G48140.1 (e_value=5e-37) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc03g113730.2.1 (e_value=5e-58) genomic_reference:SL2.40ch03 gene_region:57844615-57845617 transcript_region:SL2.40ch03:57844615..57845617+ functional_description:"B12D protein (AHRD V1 ***- Q9XHD5_IPOBA); contains Interpro domain(s) IPR010530 B12D "; NbS00008458g0021.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|3|0|237; (*GB) gi|225428969|ref|XP_002264153.1| (e_value=3e-54) PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=4e-43) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=3e-44) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=5e-66) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00008458g0008.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|397; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=2e-113) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=2e-100) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=1e-77) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008458g0023.1 protein AED:0.24 eAED:0.34 QI:0|0|0|0.5|1|1|4|0|273; (*GB) gi|359472798|ref|XP_002274984.2| (e_value=1e-94) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q56X05|PPR15_ARATH (e_value=5e-50) Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2;; (*TAIR) AT1G06150.1 (e_value=6e-50) | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322;; (*ITAG) Solyc06g066380.1.1 (e_value=3e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00008458g0037.1 protein AED:0.72 eAED:0.72 QI:43|0|0.33|0.33|1|0.66|3|0|64 NbS00008458g0005.1 protein AED:0.81 eAED:0.83 QI:0|0|0|1|1|1|2|0|260; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=2e-84) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=4e-74) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=9e-63) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=5e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008458g0033.1 protein AED:0.34 eAED:0.51 QI:0|0|0|1|0|0|3|0|184; (*GB) gi|296083063|emb|CBI22467.3| (e_value=7e-29) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=5e-14) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=4e-15) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=3e-38) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00008458g0030.1 protein AED:0.13 eAED:0.27 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|193527444|gb|ACF19787.1| (e_value=2e-35) NAC transcription factor [Nicotiana tabacum]; NbS00052125g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0|1|1|1|4|0|459; (*GB) gi|4322940|gb|AAD16139.1| (e_value=0.0) DNA-binding protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=2e-95) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=1e-96) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g012770.2.1 (e_value=1e-155) genomic_reference:SL2.40ch05 gene_region:5928753-5934454 transcript_region:SL2.40ch05:5928753..5934454+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00052125g0012.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|364; (*GB) gi|255562974|ref|XP_002522492.1| (e_value=6e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G26650.1 (e_value=2e-127) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9210335-9211342 FORWARD LENGTH=335;; (*ITAG) Solyc01g010990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6840132-6841662 transcript_region:SL2.40ch01:6840132..6841662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055320g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|0.75|0.6|5|340|305; (*GB) gi|297744012|emb|CBI36982.3| (e_value=3e-102) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G01935.1 (e_value=8e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:841102-842228 FORWARD LENGTH=256; NbS00029739g0004.1 protein AED:0.27 eAED:0.30 QI:0|0.66|0.25|1|1|1|4|0|478; (*GB) gi|359475902|ref|XP_002283433.2| (e_value=0.0) PREDICTED: protein TIC 55, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O49931|TIC55_PEA (e_value=0.0) Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1;; (*TAIR) AT2G24820.1 (e_value=0.0) | Symbols: TIC55-II | translocon at the inner envelope membrane of chloroplasts 55-II | chr2:10575038-10576829 FORWARD LENGTH=539;; (*ITAG) Solyc12g096550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63760005-63762826 transcript_region:SL2.40ch12:63760005..63762826- go_terms:GO:0055114 functional_description:"Pheophorbide a oxygenase family (AHRD V1 **-- B4VSS3_9CYAN); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0055114 NbS00029739g0006.1 protein AED:0.75 eAED:0.89 QI:0|0|0|0.33|1|0.66|3|0|162 NbS00031017g0009.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0.5|0.66|3|0|436; (*GB) gi|142942426|gb|ABO93000.1| (e_value=4e-136) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=1e-137) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G58400.1 (e_value=5e-26) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21696165-21699118 REVERSE LENGTH=900;; (*ITAG) Solyc05g007610.2.1 (e_value=3e-106) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00031017g0007.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|0|0.5|2|0|77 NbS00031017g0006.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|0|0|2|0|264; (*GB) gi|53793725|gb|AAU93588.1| (e_value=1e-50) late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=3e-52) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g007640.2.1 (e_value=7e-44) genomic_reference:SL2.40ch05 gene_region:2149733-2153957 transcript_region:SL2.40ch05:2149733..2153957+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00031017g0008.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|197; (*GB) gi|190607593|gb|ACE79459.1| (e_value=4e-63) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=6e-52) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=2e-15) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007350.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00061142g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|1|1|1|0.5|2|0|241; (*GB) gi|356549592|ref|XP_003543176.1| (e_value=1e-114) PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max];; (*SWP) sp|Q8W013|COMT1_CATRO (e_value=1e-40) Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1;; (*TAIR) AT3G53140.1 (e_value=1e-107) | Symbols: | O-methyltransferase family protein | chr3:19695692-19697355 FORWARD LENGTH=359;; (*ITAG) Solyc10g085830.1.1 (e_value=1e-137) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64223677-64226056 transcript_region:SL2.40ch10:64223677..64226056+ go_terms:GO:0008171 functional_description:"O-methyltransferase 1 (AHRD V1 ***- D7MTQ7_ARALY); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171 NbS00013549g0006.1 protein AED:0.22 eAED:0.24 QI:39|0.25|0|1|0.25|0.6|5|0|649; (*GB) gi|147818710|emb|CAN65039.1| (e_value=3e-89) hypothetical protein VITISV_009459 [Vitis vinifera];; (*TAIR) AT1G13940.1 (e_value=7e-21) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4762703-4765923 REVERSE LENGTH=1005;; (*ITAG) Solyc05g012640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5834062-5837811 transcript_region:SL2.40ch05:5834062..5837811- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00013549g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|343; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69360.1 (e_value=3e-54) | Symbols: | Plant protein of unknown function (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896;; (*ITAG) Solyc05g012640.2.1 (e_value=7e-121) genomic_reference:SL2.40ch05 gene_region:5834062-5837811 transcript_region:SL2.40ch05:5834062..5837811- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00034840g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|116778592|gb|ABK20926.1| (e_value=7e-17) unknown [Picea sitchensis];; (*SWP) sp|Q41073|NLTP_PINTA (e_value=8e-16) Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1;; (*ITAG) Solyc10g012110.1.1 (e_value=1e-33) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:4440329-4440950 transcript_region:SL2.40ch10:4440329..4440950- go_terms:GO:0005516 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A9NKV1_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516 NbS00042286g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|15144505|gb|AAK84472.1| (e_value=5e-17) unknown [Solanum lycopersicum];; (*ITAG) Solyc11g010680.2.1 (e_value=9e-20) genomic_reference:SL2.40ch11 gene_region:3721153-3724626 transcript_region:SL2.40ch11:3721153..3724626+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005322g0001.1 protein AED:0.34 eAED:0.57 QI:0|0|0|0.75|0|0|4|0|131; (*GB) gi|357436123|ref|XP_003588337.1| (e_value=1e-26) Ribosomal protein S10 [Medicago truncatula]; NbS00019898g0010.1 protein AED:0.33 eAED:0.33 QI:430|0|0.14|0.71|0.66|0.85|7|0|340; (*GB) gi|297812163|ref|XP_002873965.1| (e_value=5e-83) EMB2734 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=4e-29) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=7e-84) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-86) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00019898g0009.1 protein AED:0.74 eAED:0.84 QI:0|0|0|0.16|1|1|6|0|202; (*GB) gi|297746476|emb|CBI16532.3| (e_value=3e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19820.1 (e_value=8e-25) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00019898g0011.1 protein AED:0.46 eAED:0.86 QI:0|0|0|1|0.5|0.66|3|0|71; (*TAIR) AT5G19820.1 (e_value=1e-14) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00030917g0002.1 protein AED:0.33 eAED:0.33 QI:353|1|1|1|0.57|0.5|8|174|258; (*GB) gi|225443415|ref|XP_002268835.1| (e_value=2e-143) PREDICTED: E3 ubiquitin-protein ligase MARCH1 [Vitis vinifera];; (*TAIR) AT1G50440.3 (e_value=1e-121) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:18686099-18687646 FORWARD LENGTH=250;; (*ITAG) Solyc03g123950.2.1 (e_value=6e-128) genomic_reference:SL2.40ch03 gene_region:64693947-64697948 transcript_region:SL2.40ch03:64693947..64697948- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH2 (AHRD V1 *-*- B5XFT2_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00040567g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.6|1|0.75|0.8|5|0|502; (*GB) gi|85068618|gb|ABC69389.1| (e_value=0.0) CYP72A52v1 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc10g051020.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46848983-46854212 transcript_region:SL2.40ch10:46848983..46854212- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00028092g0004.1 protein AED:0.36 eAED:0.36 QI:0|0.6|0.33|1|1|1|6|0|450; (*GB) gi|555655|gb|AAA50196.1| (e_value=6e-121) DNA-binding protein [Nicotiana tabacum];; (*TAIR) AT3G18035.1 (e_value=5e-19) | Symbols: HON4 | winged-helix DNA-binding transcription factor family protein | chr3:6169384-6171558 REVERSE LENGTH=480;; (*ITAG) Solyc03g119130.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:61877151-61881943 transcript_region:SL2.40ch03:61877151..61881943+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H1 (AHRD V1 *-*- Q41025_PEA); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00009341g0006.1 protein AED:0.19 eAED:0.19 QI:346|1|0.66|1|0.6|0.5|6|0|656; (*GB) gi|225428969|ref|XP_002264153.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00018645g0012.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|1|1|3|0|501; (*GB) gi|255564910|ref|XP_002523448.1| (e_value=1e-157) cysteine protease, putative [Ricinus communis];; (*SWP) sp|P43156|CYSP_HEMSP (e_value=8e-110) Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1;; (*TAIR) AT5G45890.1 (e_value=1e-118) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47343277-47344539 transcript_region:SL2.40ch12:47343277..47344539+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00018645g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.28|0.12|1|0.85|0.75|8|0|600; (*GB) gi|255564908|ref|XP_002523447.1| (e_value=6e-129) cysteine protease, putative [Ricinus communis];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=3e-87) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G45890.1 (e_value=1e-92) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056000.1.1 (e_value=6e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47343277-47344539 transcript_region:SL2.40ch12:47343277..47344539+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00018645g0011.1 protein AED:0.16 eAED:0.16 QI:167|1|0.83|1|1|1|6|0|257; (*GB) gi|224114696|ref|XP_002316832.1| (e_value=3e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|P53980|YNB1_YEAST (e_value=2e-42) Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1;; (*TAIR) AT2G34090.2 (e_value=1e-113) | Symbols: MEE18 | maternal effect embryo arrest 18 | chr2:14396283-14399170 REVERSE LENGTH=471;; (*ITAG) Solyc02g076950.2.1 (e_value=2e-129) genomic_reference:SL2.40ch02 gene_region:36626803-36635169 transcript_region:SL2.40ch02:36626803..36635169+ functional_description:"UPF0052 domain protein (AHRD V1 **-- A1CBK9_ASPCL); contains Interpro domain(s) IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 "; NbS00018645g0015.1 protein AED:0.17 eAED:0.17 QI:99|1|1|1|0.71|0.75|8|453|188; (*GB) gi|225443825|ref|XP_002274261.1| (e_value=1e-94) PREDICTED: uncharacterized protein YNL011C [Vitis vinifera];; (*SWP) sp|P53980|YNB1_YEAST (e_value=3e-14) Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1;; (*TAIR) AT2G34090.1 (e_value=6e-88) | Symbols: MEE18 | maternal effect embryo arrest 18 | chr2:14396283-14399170 REVERSE LENGTH=445;; (*ITAG) Solyc02g076960.2.1 (e_value=5e-120) genomic_reference:SL2.40ch02 gene_region:36633710-36638787 transcript_region:SL2.40ch02:36633710..36638787+ go_terms:GO:0005515 functional_description:"UPF0052 domain protein (AHRD V1 **-- Q4WVM6_ASPFU); contains Interpro domain(s) IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 "; GO:0005515 NbS00034865g0007.1 protein AED:0.25 eAED:0.31 QI:0|0.5|0.33|1|0.75|0.88|9|0|563; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.2 (e_value=6e-157) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00060392g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|229; (*GB) gi|356566173|ref|XP_003551309.1| (e_value=3e-72) PREDICTED: UDP-glycosyltransferase 91A1-like [Glycine max];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=3e-57) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=7e-53) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc11g010810.1.1 (e_value=9e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3828764-3830176 transcript_region:SL2.40ch11:3828764..3830176+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00026348g0202.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|238 NbS00026348g0201.1 protein AED:0.31 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|184 NbS00026348g0208.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.2|0.8|0.75|0.8|5|0|508 NbS00049495g0016.1 protein AED:0.05 eAED:0.07 QI:0|0.33|0.25|1|0.66|0.5|4|0|256; (*GB) gi|255540961|ref|XP_002511545.1| (e_value=1e-120) aldose-1-epimerase, putative [Ricinus communis];; (*SWP) sp|Q8K157|GALM_MOUSE (e_value=8e-53) Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1;; (*TAIR) AT3G47800.1 (e_value=2e-122) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:17634971-17636998 FORWARD LENGTH=358;; (*ITAG) Solyc03g113030.2.1 (e_value=7e-150) genomic_reference:SL2.40ch03 gene_region:57379233-57381467 transcript_region:SL2.40ch03:57379233..57381467- go_terms:GO:0005975,GO:0019318 functional_description:"Aldose 1-epimerase-like protein (AHRD V1 ***- Q8LFH1_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005975,GO:0019318 NbS00049495g0014.1 protein AED:0.17 eAED:0.19 QI:45|0.84|0.92|1|0.76|0.78|14|450|682; (*GB) gi|225456715|ref|XP_002274303.1| (e_value=0.0) PREDICTED: ABC transporter A family member 7 [Vitis vinifera];; (*SWP) sp|Q9STT5|AB7A_ARATH (e_value=0.0) ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2;; (*TAIR) AT3G47780.1 (e_value=0.0) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935;; (*ITAG) Solyc03g113060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57405362-57413188 transcript_region:SL2.40ch03:57405362..57413188- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RFW2_SELML); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00049495g0015.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|4|0|180; (*GB) gi|225456715|ref|XP_002274303.1| (e_value=1e-104) PREDICTED: ABC transporter A family member 7 [Vitis vinifera];; (*SWP) sp|Q9STT5|AB7A_ARATH (e_value=3e-97) ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2;; (*TAIR) AT3G47780.1 (e_value=2e-98) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935;; (*ITAG) Solyc03g113060.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:57405362-57413188 transcript_region:SL2.40ch03:57405362..57413188- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RFW2_SELML); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00049495g0013.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.5|1|1|1|4|0|245; (*GB) gi|357462271|ref|XP_003601417.1| (e_value=9e-118) Vacuolar protein sorting [Medicago truncatula];; (*SWP) sp|Q9STT2|VPS29_ARATH (e_value=5e-103) Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1;; (*TAIR) AT3G47810.3 (e_value=3e-104) | Symbols: MAG1 | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:17637256-17639017 REVERSE LENGTH=190;; (*ITAG) Solyc03g113020.2.1 (e_value=4e-120) genomic_reference:SL2.40ch03 gene_region:57374726-57378948 transcript_region:SL2.40ch03:57374726..57378948+ go_terms:GO:0008565,GO:0042802 functional_description:"Vacuolar protein sorting 29 (AHRD V1 ***- B6SUM0_MAIZE); contains Interpro domain(s) IPR000979 Uncharacterised protein family UPF0025 "; GO:0008565,GO:0042802 NbS00005336g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.57|0.5|1|0.71|0.75|8|0|374; (*GB) gi|363807278|ref|NP_001242618.1| (e_value=2e-100) uncharacterized protein LOC100803766 [Glycine max];; (*SWP) sp|Q9FH76|ABAH3_ARATH (e_value=2e-27) Abscisic acid 8'-hydroxylase 3 OS=Arabidopsis thaliana GN=CYP707A3 PE=1 SV=1;; (*TAIR) AT1G19630.1 (e_value=6e-30) | Symbols: CYP722A1 | cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476;; (*ITAG) Solyc04g071150.2.1 (e_value=6e-125) genomic_reference:SL2.40ch04 gene_region:55668623-55672862 transcript_region:SL2.40ch04:55668623..55672862- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00005336g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|0.75|0.8|5|0|526; (*GB) gi|225463912|ref|XP_002266398.1| (e_value=0.0) PREDICTED: histidine decarboxylase-like [Vitis vinifera];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=1e-166) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=0.0) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc04g071140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55663674-55668653 transcript_region:SL2.40ch04:55663674..55668653+ go_terms:GO:0006468,GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0006468,GO:0019752,GO:0030170 NbS00006222g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.63|1|0.8|0.72|11|0|484; (*GB) gi|62822992|gb|AAY15214.1| (e_value=0.0) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=8e-115) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT5G06839.3 (e_value=1e-174) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g080410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61008679-61015000 transcript_region:SL2.40ch10:61008679..61015000- go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00010982g0109.1 protein AED:0.10 eAED:0.14 QI:0|0.25|0.2|1|0.25|0.4|5|483|798 NbS00005293g0008.1 protein AED:0.12 eAED:0.12 QI:174|0.71|0.87|0.87|0.85|0.75|8|142|265; (*GB) gi|357477153|ref|XP_003608862.1| (e_value=1e-132) Adenylate kinase B [Medicago truncatula];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=8e-134) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G63400.1 (e_value=8e-124) | Symbols: ADK1 | adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246;; (*ITAG) Solyc05g014980.2.1 (e_value=3e-143) genomic_reference:SL2.40ch05 gene_region:9188640-9193694 transcript_region:SL2.40ch05:9188640..9193694- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00005293g0007.1 protein AED:0.15 eAED:0.15 QI:267|0.92|1|1|1|1|15|1048|661; (*GB) gi|225425836|ref|XP_002266642.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase dhx8-like [Vitis vinifera];; (*SWP) sp|Q14562|DHX8_HUMAN (e_value=3e-166) ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1;; (*TAIR) AT1G27900.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700;; (*ITAG) Solyc05g015040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9724620-9743463 transcript_region:SL2.40ch05:9724620..9743463+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00010429g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|225426086|ref|XP_002272144.1| (e_value=2e-96) PREDICTED: disease resistance response protein 206-like [Vitis vinifera];; (*SWP) sp|P13240|DR206_PEA (e_value=7e-74) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT4G23690.1 (e_value=2e-61) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr4:12339152-12339715 REVERSE LENGTH=187;; (*ITAG) Solyc08g081790.1.1 (e_value=1e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61912629-61913198 transcript_region:SL2.40ch08:61912629..61913198- functional_description:"Dirigent protein (AHRD V1 ***- Q9SDR7_FORIN); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00007863g0013.1 protein AED:0.29 eAED:0.29 QI:0|0.88|0.7|1|0.44|0.6|10|0|484; (*GB) gi|356536226|ref|XP_003536640.1| (e_value=0.0) PREDICTED: sulfhydryl oxidase 1-like [Glycine max];; (*SWP) sp|Q8W4J3|QSOX1_ARATH (e_value=0.0) Sulfhydryl oxidase 1 OS=Arabidopsis thaliana GN=QSOX1 PE=2 SV=1;; (*TAIR) AT1G15020.2 (e_value=0.0) | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydryl oxidase 1 | chr1:5173341-5176105 REVERSE LENGTH=528;; (*ITAG) Solyc04g007610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1288587-1297443 transcript_region:SL2.40ch04:1288587..1297443- go_terms:GO:0045454,GO:0055114 functional_description:"Protein disulfide-isomerase (AHRD V1 *--- P93358_TOBAC); contains Interpro domain(s) IPR006863 Erv1/Alr "; GO:0045454,GO:0055114 NbS00007863g0012.1 protein AED:0.05 eAED:0.05 QI:335|1|0.87|1|0.42|0.5|8|0|263; (*GB) gi|225453082|ref|XP_002270912.1| (e_value=1e-93) PREDICTED: uncharacterized protein LOC100258737 [Vitis vinifera];; (*TAIR) AT2G01275.2 (e_value=1e-75) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259;; (*ITAG) Solyc04g007600.2.1 (e_value=3e-157) genomic_reference:SL2.40ch04 gene_region:1283981-1287563 transcript_region:SL2.40ch04:1283981..1287563+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00058914g0005.1 protein AED:0.04 eAED:0.07 QI:0|1|0.6|1|1|0.8|5|0|461; (*GB) gi|225448601|ref|XP_002278665.1| (e_value=0.0) PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Vitis vinifera];; (*SWP) sp|Q6DEL1|S38A7_DANRE (e_value=3e-22) Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1;; (*TAIR) AT3G56200.1 (e_value=3e-155) | Symbols: | Transmembrane amino acid transporter family protein | chr3:20850087-20851779 FORWARD LENGTH=435;; (*ITAG) Solyc05g052300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61718647-61720798 transcript_region:SL2.40ch05:61718647..61720798- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9HYI5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00058914g0003.1 protein AED:0.03 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|393; (*GB) gi|225443049|ref|XP_002269241.1| (e_value=2e-86) PREDICTED: F-box protein At5g07610 [Vitis vinifera];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=2e-59) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=2e-60) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc04g071270.1.1 (e_value=6e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55799722-55800912 transcript_region:SL2.40ch04:55799722..55800912- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00015162g0013.1 protein AED:0.23 eAED:0.24 QI:222|0.75|0.70|1|0.37|0.64|17|0|698; (*GB) gi|225455690|ref|XP_002265587.1| (e_value=0.0) PREDICTED: mitochondrial intermediate peptidase [Vitis vinifera];; (*SWP) sp|A6H611|MIPEP_MOUSE (e_value=7e-113) Mitochondrial intermediate peptidase OS=Mus musculus GN=Mipep PE=2 SV=1;; (*TAIR) AT5G51540.1 (e_value=0.0) | Symbols: | Zincin-like metalloproteases family protein | chr5:20932071-20936284 FORWARD LENGTH=706;; (*ITAG) Solyc03g083580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47077199-47090326 transcript_region:SL2.40ch03:47077199..47090326- go_terms:GO:0004222 functional_description:"Mitochondrial intermediate peptidase (AHRD V1 **-- Q17F93_AEDAE); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0004222 NbS00015162g0012.1 protein AED:0.33 eAED:0.34 QI:0|1|0|1|1|1|2|0|187; (*GB) gi|225455677|ref|XP_002264722.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100261162 [Vitis vinifera];; (*TAIR) AT5G51545.1 (e_value=4e-29) | Symbols: LPA2 | low psii accumulation2 | chr5:20936434-20937243 FORWARD LENGTH=185;; (*ITAG) Solyc03g083570.2.1 (e_value=6e-58) genomic_reference:SL2.40ch03 gene_region:47072182-47074974 transcript_region:SL2.40ch03:47072182..47074974- functional_description:"Unknown Protein (AHRD V1)"; NbS00015162g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|15242118|ref|NP_199968.1| (e_value=1e-136) protein EXORDIUM like 3 [Arabidopsis thaliana];; (*TAIR) AT5G51550.1 (e_value=3e-139) | Symbols: EXL3 | EXORDIUM like 3 | chr5:20939793-20940806 REVERSE LENGTH=337;; (*ITAG) Solyc06g034390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:20906143-20907183 transcript_region:SL2.40ch06:20906143..20907183- functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP0_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00034215g0001.1 protein AED:0.12 eAED:0.39 QI:63|-1|0|1|-1|1|1|0|50; (*GB) gi|131385|sp|P26320.1|PSBO_SOLTU (e_value=7e-24) RecName: Full=Oxygen-evolving enhancer protein 1, chloroplastic; Short=OEE1; AltName: Full=33 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=33 kDa thylakoid membrane protein; AltName: Full=OEC 33 kDa subunit; Flags: Precursor;; (*SWP) sp|P26320|PSBO_SOLTU (e_value=2e-25) Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1;; (*TAIR) AT5G66570.1 (e_value=2e-22) | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PS II oxygen-evolving complex 1 | chr5:26568744-26570124 FORWARD LENGTH=332;; (*ITAG) Solyc02g090030.2.1 (e_value=4e-26) genomic_reference:SL2.40ch02 gene_region:46276521-46278207 transcript_region:SL2.40ch02:46276521..46278207- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266 NbS00032738g0001.1 protein AED:0.00 eAED:0.00 QI:45|0|0.5|1|0|0.5|2|118|90; (*GB) gi|225458277|ref|XP_002282461.1| (e_value=1e-36) PREDICTED: dnaJ homolog subfamily C member 2 [Vitis vinifera];; (*TAIR) AT1G75250.1 (e_value=7e-28) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc12g089170.1.1 (e_value=6e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62729446-62729721 transcript_region:SL2.40ch12:62729446..62729721- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 ***- D7KSM0_ARALY); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00031330g0016.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|1|1|4|0|1173; (*GB) gi|356538575|ref|XP_003537778.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D3-like [Glycine max];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0.0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=0.0) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc08g005280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:210633-215145 transcript_region:SL2.40ch08:210633..215145+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00031330g0012.1 protein AED:0.39 eAED:0.39 QI:155|1|0.75|1|1|1|4|322|100; (*GB) gi|13548685|dbj|BAB40808.1| (e_value=3e-63) homolog of defender against apoptotic death 1 homolog [Nicotiana suaveolens x Nicotiana tabacum];; (*SWP) sp|Q9SMC4|DAD1_SOLLC (e_value=1e-62) Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1;; (*TAIR) AT2G35520.1 (e_value=4e-55) | Symbols: DAD2 | Defender against death (DAD family) protein | chr2:14921587-14922657 FORWARD LENGTH=115;; (*ITAG) Solyc08g076460.2.1 (e_value=9e-64) genomic_reference:SL2.40ch08 gene_region:57631953-57635858 transcript_region:SL2.40ch08:57631953..57635858+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like protein (AHRD V1 **-* A2I438_MACHI); contains Interpro domain(s) IPR003038 Defender against death DAD protein "; GO:0042802,GO:0004579 NbS00031330g0005.1 protein AED:0.23 eAED:0.23 QI:377|0.69|0.64|0.92|0.92|0.85|14|550|392; (*GB) gi|5381313|gb|AAD42938.1|AF084972_1 (e_value=9e-152) G-Box binding protein 2 [Catharanthus roseus];; (*SWP) sp|P23922|HBP1A_WHEAT (e_value=3e-42) Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G32150.1 (e_value=4e-116) | Symbols: bZIP68, AtbZIP68 | basic region/leucine zipper transcription factor 68 | chr1:11566022-11568317 FORWARD LENGTH=389;; (*ITAG) Solyc08g005290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:216588-227934 transcript_region:SL2.40ch08:216588..227934- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00021951g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.25|1|0|0|4|0|143; (*GB) gi|14715183|emb|CAC44080.1| (e_value=5e-56) putative MADS-domain transcription factor DEFH7 [Antirrhinum majus];; (*SWP) sp|O64645|SOC1_ARATH (e_value=2e-33) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=1e-34) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc03g019710.2.1 (e_value=7e-66) genomic_reference:SL2.40ch03 gene_region:6652676-6656225 transcript_region:SL2.40ch03:6652676..6656225+ go_terms:GO:0046982 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q5KT55_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0046982 NbS00058860g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.57|0.25|0.87|0.71|0.62|8|0|301; (*GB) gi|357520603|ref|XP_003630590.1| (e_value=2e-131) Signal recognition particle 68 kDa protein [Medicago truncatula];; (*SWP) sp|Q9UHB9|SRP68_HUMAN (e_value=7e-37) Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2;; (*TAIR) AT5G61970.1 (e_value=2e-132) | Symbols: | signal recognition particle-related / SRP-related | chr5:24888920-24893079 FORWARD LENGTH=605;; (*ITAG) Solyc03g093970.2.1 (e_value=2e-161) genomic_reference:SL2.40ch03 gene_region:49129109-49139275 transcript_region:SL2.40ch03:49129109..49139275+ go_terms:GO:0005047 functional_description:"Signal recognition particle 68 (AHRD V1 **** A2AAN1_MOUSE)"; GO:0005047 NbS00023673g0004.1 protein AED:0.12 eAED:0.12 QI:164|0.75|0.76|1|0.87|0.94|17|0|941; (*GB) gi|224053869|ref|XP_002298020.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81742|APBLC_ARATH (e_value=0.0) Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2;; (*TAIR) AT4G23460.1 (e_value=0.0) | Symbols: | Adaptin family protein | chr4:12243899-12248898 REVERSE LENGTH=893;; (*ITAG) Solyc08g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61549434-61558071 transcript_region:SL2.40ch08:61549434..61558071- go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit "; GO:0030276 NbS00040117g0006.1 protein AED:0.26 eAED:0.32 QI:0|0.57|0.62|1|0.71|0.87|8|226|220; (*GB) gi|94449004|gb|ABF19052.1| (e_value=9e-124) gamma-tubulin, partial [Nicotiana tabacum];; (*SWP) sp|P38557|TBG1_ARATH (e_value=6e-120) Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1;; (*TAIR) AT3G61650.1 (e_value=4e-121) | Symbols: TUBG1 | gamma-tubulin | chr3:22812601-22815011 REVERSE LENGTH=474;; (*ITAG) Solyc03g111380.2.1 (e_value=1e-125) genomic_reference:SL2.40ch03 gene_region:56018424-56026055 transcript_region:SL2.40ch03:56018424..56026055- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- C1BSD0_9MAXI); contains Interpro domain(s) IPR002454 Gamma tubulin "; GO:0005200 NbS00040117g0001.1 protein AED:0.34 eAED:0.34 QI:0|1|0.33|1|1|1|3|0|196; (*GB) gi|11414996|dbj|BAB18571.1| (e_value=2e-125) gamma-tubulin1 [Nicotiana tabacum];; (*SWP) sp|Q9XFG3|TBG_PHYPA (e_value=6e-125) Tubulin gamma chain OS=Physcomitrella patens subsp. patens GN=TUBG1 PE=3 SV=1;; (*TAIR) AT5G05620.1 (e_value=5e-121) | Symbols: TUBG2, ATGCP2, GCP2 | gamma-tubulin complex protein 2 | chr5:1679340-1681719 FORWARD LENGTH=474;; (*ITAG) Solyc03g111380.2.1 (e_value=1e-128) genomic_reference:SL2.40ch03 gene_region:56018424-56026055 transcript_region:SL2.40ch03:56018424..56026055- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- C1BSD0_9MAXI); contains Interpro domain(s) IPR002454 Gamma tubulin "; GO:0005200 NbS00018317g0005.1 protein AED:0.41 eAED:0.40 QI:0|0.4|0.16|0.66|0.8|0.83|6|0|223; (*GB) gi|34393752|dbj|BAC84952.1| (e_value=1e-94) PHCLF3 [Petunia x hybrida];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=3e-37) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=2e-38) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00004397g0015.1 protein AED:0.09 eAED:0.10 QI:263|0.76|0.68|1|0.85|0.81|22|313|1350; (*GB) gi|49615726|gb|AAT67045.1| (e_value=0.0) DNA mismatch repair protein [Petunia x hybrida];; (*SWP) sp|O04716|MSH6_ARATH (e_value=0.0) DNA mismatch repair protein Msh6-1 OS=Arabidopsis thaliana GN=MSH6-1 PE=2 SV=2;; (*TAIR) AT4G02070.1 (e_value=0.0) | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | chr4:906079-912930 FORWARD LENGTH=1324;; (*ITAG) Solyc01g079520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71091922-71101937 transcript_region:SL2.40ch01:71091922..71101937+ go_terms:GO:0032137 functional_description:"DNA mismatch repair protein muts (AHRD V1 ***- Q16P35_AEDAE); contains Interpro domain(s) IPR017261 DNA mismatch repair protein Msh6 "; GO:0032137 NbS00004397g0014.1 protein AED:0.13 eAED:0.13 QI:141|0.86|0.82|1|0.72|0.78|23|0|1717; (*GB) gi|225437555|ref|XP_002270469.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248563 [Vitis vinifera];; (*SWP) sp|Q921C3|BRWD1_MOUSE (e_value=7e-66) Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=2;; (*TAIR) AT2G47410.2 (e_value=0.0) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr2:19449133-19456991 FORWARD LENGTH=1519;; (*ITAG) Solyc01g079510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71069631-71090760 transcript_region:SL2.40ch01:71069631..71090760+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein-like (AHRD V1 *--- Q9FGX4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00004397g0003.1 protein AED:0.27 eAED:0.28 QI:62|0|0.5|1|0|0.5|2|0|203; (*GB) gi|357442283|ref|XP_003591419.1| (e_value=7e-53) Multidrug resistance protein ABC transporter family protein [Medicago truncatula];; (*TAIR) AT4G02090.1 (e_value=1e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 132 Blast hits to 132 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:923122-923730 FORWARD LENGTH=202;; (*ITAG) Solyc01g079550.2.1 (e_value=2e-99) genomic_reference:SL2.40ch01 gene_region:71128676-71129498 transcript_region:SL2.40ch01:71128676..71129498+ functional_description:"Multidrug resistance protein ABC transporter family protein (AHRD V1 ***- B9GSR7_POPTR)"; NbS00004397g0016.1 protein AED:0.36 eAED:0.36 QI:0|1|0.66|1|1|1|3|0|193; (*GB) gi|1549222|dbj|BAA13463.1| (e_value=1e-100) NtSar1 protein [Nicotiana tabacum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=7e-96) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=6e-97) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc06g009660.2.1 (e_value=5e-102) genomic_reference:SL2.40ch06 gene_region:3608115-3612636 transcript_region:SL2.40ch06:3608115..3612636+ go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00004397g0022.1 protein AED:0.34 eAED:0.39 QI:46|0.5|0.57|1|0.66|0.71|7|29|207; (*GB) gi|225437543|ref|XP_002275880.1| (e_value=6e-43) PREDICTED: uncharacterized protein LOC100260678 [Vitis vinifera];; (*TAIR) AT1G02610.1 (e_value=5e-26) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:553181-555854 REVERSE LENGTH=221;; (*ITAG) Solyc01g079530.2.1 (e_value=5e-86) genomic_reference:SL2.40ch01 gene_region:71102398-71104995 transcript_region:SL2.40ch01:71102398..71104995- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH6 (AHRD V1 *--- C1HD92_PARBA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00056291g0005.1 protein AED:0.34 eAED:0.34 QI:0|0.16|0|0.71|0.5|0.28|7|0|489; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-39) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g066930.1.1 (e_value=6e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00054758g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.62|1|0.85|0.87|8|0|342; (*GB) gi|350537521|ref|NP_001233786.1| (e_value=0.0) cyclin B2 [Solanum lycopersicum];; (*SWP) sp|P46277|CCNB1_MEDSV (e_value=4e-164) G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1;; (*TAIR) AT1G20610.1 (e_value=2e-137) | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429;; (*ITAG) Solyc03g032190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00010559g0003.1 protein AED:0.04 eAED:0.04 QI:240|0.83|0.85|0.85|0.83|0.71|7|0|186; (*GB) gi|225424031|ref|XP_002283449.1| (e_value=2e-115) PREDICTED: chaperone protein dnaJ 15 [Vitis vinifera];; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=1e-113) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=1e-114) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc05g009160.2.1 (e_value=6e-124) genomic_reference:SL2.40ch05 gene_region:3288278-3295690 transcript_region:SL2.40ch05:3288278..3295690+ go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00010559g0008.1 protein AED:0.29 eAED:0.29 QI:11|0.66|0.5|1|1|0.75|4|0|157; (*GB) gi|255572122|ref|XP_002527001.1| (e_value=1e-67) altered response to gravity (arg1), plant, putative [Ricinus communis];; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=1e-57) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=9e-59) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc04g007370.2.1 (e_value=8e-65) genomic_reference:SL2.40ch04 gene_region:1065839-1072643 transcript_region:SL2.40ch04:1065839..1072643- go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00010686g0021.1 protein AED:0.18 eAED:0.18 QI:171|1|0.87|1|1|1|8|0|500; (*GB) gi|359481363|ref|XP_002280929.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265508 [Vitis vinifera];; (*TAIR) AT5G60580.3 (e_value=1e-134) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc09g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1227123-1233091 transcript_region:SL2.40ch09:1227123..1233091- go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 **-- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00010686g0025.1 protein AED:0.01 eAED:0.01 QI:169|1|1|1|0.66|0.75|4|370|184; (*GB) gi|255565246|ref|XP_002523615.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G15530.3 (e_value=2e-17) | Symbols: | RING/U-box superfamily protein | chr2:6774150-6777068 FORWARD LENGTH=704;; (*ITAG) Solyc02g069760.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34159276-34162728 transcript_region:SL2.40ch02:34159276..34162728+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010686g0024.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|229|231; (*GB) gi|225438752|ref|XP_002278073.1| (e_value=9e-19) PREDICTED: uncharacterized protein LOC100247468 [Vitis vinifera];; (*TAIR) AT5G42940.1 (e_value=4e-15) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc02g069760.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34159276-34162728 transcript_region:SL2.40ch02:34159276..34162728+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010686g0034.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0|0.33|3|0|463; (*GB) gi|359481520|ref|XP_002275477.2| (e_value=2e-131) PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=1e-75) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT5G03150.1 (e_value=9e-77) | Symbols: JKD | C2H2-like zinc finger protein | chr5:745849-748678 FORWARD LENGTH=503;; (*ITAG) Solyc09g007550.2.1 (e_value=3e-178) genomic_reference:SL2.40ch09 gene_region:1151049-1153414 transcript_region:SL2.40ch09:1151049..1153414+ go_terms:GO:0003700,GO:0042803 functional_description:"Zinc finger family protein (AHRD V1 *--- D7M7Z8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0042803 NbS00010686g0002.1 protein AED:0.22 eAED:0.22 QI:354|0.63|0.66|0.91|1|1|12|576|577; (*GB) gi|225439966|ref|XP_002280841.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 20-like [Vitis vinifera];; (*SWP) sp|A1DMI8|CREC_NEOFI (e_value=1e-53) Probable catabolite repression protein creC OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=creC PE=3 SV=1;; (*TAIR) AT2G37160.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15609047-15612529 FORWARD LENGTH=544;; (*ITAG) Solyc09g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1218277-1226059 transcript_region:SL2.40ch09:1218277..1226059+ go_terms:GO:0005223 functional_description:"Wd-repeat protein (AHRD V1 **-- B0XIY9_CULQU); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005223 NbS00010686g0030.1 protein AED:0.23 eAED:0.23 QI:0|0.88|0.8|0.9|0.88|0.9|10|0|499; (*GB) gi|350538211|ref|NP_001234332.1| (e_value=0.0) P58IPK [Solanum lycopersicum];; (*SWP) sp|Q54M21|DNJC3_DICDI (e_value=4e-53) DnaJ homolog subfamily C member 3 homolog OS=Dictyostelium discoideum GN=dnajc3 PE=3 SV=1;; (*TAIR) AT5G03160.1 (e_value=0.0) | Symbols: ATP58IPK, P58IPK | homolog of mamallian P58IPK | chr5:750286-752671 FORWARD LENGTH=482;; (*ITAG) Solyc09g007630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1202699-1207893 transcript_region:SL2.40ch09:1202699..1207893+ go_terms:GO:0004860 functional_description:"Chaperone DnaJ (AHRD V1 *-*- C4JWN5_UNCRE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0004860 NbS00010686g0004.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|258; (*GB) gi|255557028|ref|XP_002519547.1| (e_value=2e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LEE9|FLA12_ARATH (e_value=4e-56) Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2;; (*TAIR) AT5G60490.1 (e_value=3e-57) | Symbols: FLA12 | FASCICLIN-like arabinogalactan-protein 12 | chr5:24325916-24326665 REVERSE LENGTH=249;; (*ITAG) Solyc09g007650.1.1 (e_value=1e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1212465-1213208 transcript_region:SL2.40ch09:1212465..1213208+ functional_description:"Fasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00010686g0005.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|455; (*GB) gi|224101835|ref|XP_002312439.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9Q6|SCP50_ARATH (e_value=4e-169) Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1;; (*TAIR) AT1G15000.1 (e_value=3e-170) | Symbols: scpl50 | serine carboxypeptidase-like 50 | chr1:5168613-5169947 FORWARD LENGTH=444;; (*ITAG) Solyc09g007640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1208268-1210947 transcript_region:SL2.40ch09:1208268..1210947+ go_terms:GO:0042802 functional_description:"Serine carboxypeptidase (AHRD V1 ***- A8HP98_CHLRE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802 NbS00010686g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|224; (*GB) gi|30841338|gb|AAO92753.1| (e_value=1e-66) arabinogalactan protein [Gossypium hirsutum];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=7e-62) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=5e-63) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc09g007660.1.1 (e_value=5e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1214595-1215314 transcript_region:SL2.40ch09:1214595..1215314+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00045453g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|166; (*GB) gi|225427074|ref|XP_002275856.1| (e_value=5e-102) PREDICTED: vacuolar protein sorting-associated protein 25 [Vitis vinifera];; (*SWP) sp|Q8VZC9|VPS25_ARATH (e_value=9e-95) Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1;; (*TAIR) AT4G19003.1 (e_value=6e-96) | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179;; (*ITAG) Solyc08g076130.2.1 (e_value=1e-108) genomic_reference:SL2.40ch08 gene_region:57326717-57332644 transcript_region:SL2.40ch08:57326717..57332644- go_terms:GO:0005515,GO:0004674 functional_description:"Vacuolar protein sorting protein 25 (AHRD V1 ***- B6SHU1_MAIZE); contains Interpro domain(s) IPR008570 ESCRT-II complex, vps25 subunit "; GO:0005515,GO:0004674 NbS00004459g0001.1 protein AED:0.23 eAED:0.23 QI:237|0.87|0.88|1|0.87|0.88|9|380|354; (*GB) gi|359496625|ref|XP_002263670.2| (e_value=0.0) PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera];; (*SWP) sp|P19446|MDHG_CITLA (e_value=0.0) Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT2G22780.1 (e_value=0.0) | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase 1 | chr2:9689995-9691923 REVERSE LENGTH=354;; (*ITAG) Solyc02g063490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30142872-30148026 transcript_region:SL2.40ch02:30142872..30148026- go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** B9S7S1_RICCO); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00004459g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|218; (*GB) gi|225432542|ref|XP_002277699.1| (e_value=5e-44) PREDICTED: basic 7S globulin-like [Vitis vinifera];; (*TAIR) AT1G03220.1 (e_value=1e-32) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc02g063480.2.1 (e_value=5e-104) genomic_reference:SL2.40ch02 gene_region:30141169-30142786 transcript_region:SL2.40ch02:30141169..30142786+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00000344g0001.1 protein AED:0.20 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|310892560|gb|ADP37422.1| (e_value=1e-59) ethylene-responsive-element-binding factor 7 [Petunia x hybrida];; (*SWP) sp|Q9LDE4|ERF83_ARATH (e_value=7e-19) Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1;; (*TAIR) AT3G20310.1 (e_value=6e-20) | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response factor 7 | chr3:7085957-7086691 REVERSE LENGTH=244;; (*ITAG) Solyc07g049490.1.1 (e_value=4e-60) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:57088001-57088597 transcript_region:SL2.40ch07:57088001..57088597+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00008322g0012.1 protein AED:0.24 eAED:0.24 QI:48|1|0.83|1|1|0.83|6|0|413; (*GB) gi|1709798|sp|P54778.1|PRS6B_SOLTU (e_value=0.0) RecName: Full=26S protease regulatory subunit 6B homolog;; (*SWP) sp|P54778|PRS6B_SOLTU (e_value=0.0) 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58290.1 (e_value=0.0) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44672378-44677754 transcript_region:SL2.40ch06:44672378..44677754- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00008322g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.5|1|0.8|0.66|6|0|576; (*GB) gi|225434311|ref|XP_002264896.1| (e_value=0.0) PREDICTED: root phototropism protein 2 [Vitis vinifera];; (*SWP) sp|Q682S0|RPT2_ARATH (e_value=0.0) Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2;; (*TAIR) AT2G30520.1 (e_value=0.0) | Symbols: RPT2 | Phototropic-responsive NPH3 family protein | chr2:13002920-13005573 REVERSE LENGTH=593;; (*ITAG) Solyc07g043130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54046301-54048727 transcript_region:SL2.40ch07:54046301..54048727- go_terms:GO:0005515 functional_description:"Os12g0117400 protein (Fragment) (AHRD V1 **-- Q0IQJ6_ORYSJ); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00054297g0004.1 protein AED:0.03 eAED:0.03 QI:639|1|1|1|1|1|2|606|135; (*GB) gi|224059180|ref|XP_002299755.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT1G52565.1 (e_value=2e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19580061-19580511 REVERSE LENGTH=129;; (*ITAG) Solyc03g116630.2.1 (e_value=2e-63) genomic_reference:SL2.40ch03 gene_region:60018861-60019985 transcript_region:SL2.40ch03:60018861..60019985+ functional_description:"Unknown Protein (AHRD V1)"; NbC24754989g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|0.5|0.66|3|0|80; (*GB) gi|378792623|pdb|4DI5|A (e_value=1e-43) Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline;; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=5e-45) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT1G70080.1 (e_value=4e-16) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:26394669-26397565 REVERSE LENGTH=611;; (*ITAG) Solyc01g101170.2.1 (e_value=9e-38) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00057822g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|232; (*GB) gi|356569754|ref|XP_003553061.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100781140 [Glycine max];; (*TAIR) AT1G50650.1 (e_value=2e-15) | Symbols: | Stigma-specific Stig1 family protein | chr1:18763773-18764297 REVERSE LENGTH=174;; (*ITAG) Solyc03g116450.1.1 (e_value=7e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59931693-59932295 transcript_region:SL2.40ch03:59931693..59932295- functional_description:"Stigma-specific protein Stig1 (AHRD V1 **-- A2Q6A5_MEDTR); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00062249g0007.1 protein AED:0.13 eAED:0.13 QI:142|1|1|1|0.8|0.72|11|561|361; (*GB) gi|359476730|ref|XP_002274448.2| (e_value=1e-155) PREDICTED: uncharacterized membrane protein YOL092W-like [Vitis vinifera];; (*SWP) sp|Q12010|YO092_YEAST (e_value=3e-11) Uncharacterized membrane protein YOL092W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL092W PE=1 SV=1;; (*TAIR) AT4G36850.1 (e_value=2e-139) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr4:17353415-17355822 REVERSE LENGTH=392;; (*ITAG) Solyc02g089890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46152628-46161078 transcript_region:SL2.40ch02:46152628..46161078- go_terms:GO:0006508,GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *-*- D3NY83_AZOS1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0006508,GO:0044237,GO:0008152 NbS00038200g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q9LIA8|UGDH1_ARATH (e_value=0.0) Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00024502g0001.1 protein AED:0.22 eAED:0.22 QI:533|1|0.88|1|1|1|9|304|549; (*GB) gi|189909329|gb|ACE60600.1| (e_value=0.0) mannan synthase [Coffea canephora];; (*SWP) sp|Q6UDF0|CSLA1_CYATE (e_value=0.0) Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=ManS PE=1 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00038884g0001.1 protein AED:0.16 eAED:0.17 QI:0|1|0.88|1|1|1|9|343|499; (*GB) gi|117622284|gb|ABK51386.1| (e_value=0.0) apyrase-like protein [Nicotiana tabacum];; (*SWP) sp|P52914|NTPA_PEA (e_value=2e-144) Nucleoside-triphosphatase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G18280.1 (e_value=0.0) | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578;; (*ITAG) Solyc12g096560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63765079-63769466 transcript_region:SL2.40ch12:63765079..63769466+ go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00038884g0006.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00015342g0001.1 protein AED:0.37 eAED:0.52 QI:0|0|0|1|1|1|2|195|140; (*GB) gi|224138060|ref|XP_002326508.1| (e_value=8e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g080890.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:72726646-72727265 transcript_region:SL2.40ch01:72726646..72727265+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011068g0005.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|0.6|0.66|6|0|224; (*GB) gi|223049408|gb|ACM80348.1| (e_value=2e-103) cysteine proteinase [Solanum lycopersicum];; (*SWP) sp|P43296|RD19A_ARATH (e_value=2e-84) Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=1e-85) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc01g110110.2.1 (e_value=5e-106) genomic_reference:SL2.40ch01 gene_region:88650256-88653173 transcript_region:SL2.40ch01:88650256..88653173+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbC25872399g0003.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|3|0|516; (*GB) gi|114193|sp|P27608.1|AROF_TOBAC (e_value=0.0) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1; AltName: Full=DAHP synthase 1; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 1; Flags: Precursor;; (*SWP) sp|P27608|AROF_TOBAC (e_value=0.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1;; (*TAIR) AT1G22410.1 (e_value=0.0) | Symbols: | Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527;; (*ITAG) Solyc04g074480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58061772-58065403 transcript_region:SL2.40ch04:58061772..58065403+ go_terms:GO:0005515,GO:0003849 functional_description:"3-deoxy-7-phosphoheptulonate synthase (Phospho-2-dehydro-3-deoxyheptonate aldolase) (DAHP synthetase class II) (AHRD V1 **** A4YX08_BRASO); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0005515,GO:0003849 NbS00051068g0003.1 protein AED:0.13 eAED:0.13 QI:196|1|1|1|0.75|0.8|5|148|146; (*GB) gi|76160980|gb|ABA40453.1| (e_value=1e-58) RNA binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=1e-47) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT4G13850.4 (e_value=3e-49) | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=129;; (*ITAG) Solyc05g053780.2.1 (e_value=4e-62) genomic_reference:SL2.40ch05 gene_region:62958028-62959831 transcript_region:SL2.40ch05:62958028..62959831+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein-like protein (AHRD V1 ***- Q3HVL3_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003676,GO:0000166 NbS00020676g0010.1 protein AED:0.07 eAED:0.45 QI:0|1|0.33|1|1|1|3|194|287; (*GB) gi|356548565|ref|XP_003542671.1| (e_value=5e-45) PREDICTED: uncharacterized protein LOC100784254 [Glycine max];; (*TAIR) AT5G20190.1 (e_value=4e-44) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6814093-6815171 FORWARD LENGTH=290;; (*ITAG) Solyc03g116670.2.1 (e_value=5e-43) genomic_reference:SL2.40ch03 gene_region:60036546-60038822 transcript_region:SL2.40ch03:60036546..60038822+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00020676g0014.1 protein AED:0.24 eAED:0.29 QI:3|0.42|0.12|1|0.57|0.62|8|0|423; (*GB) gi|225430291|ref|XP_002285138.1| (e_value=2e-59) PREDICTED: uncharacterized protein LOC100244101 [Vitis vinifera];; (*TAIR) AT4G32330.2 (e_value=5e-47) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr4:15609801-15611867 FORWARD LENGTH=436;; (*ITAG) Solyc08g059800.2.1 (e_value=3e-147) genomic_reference:SL2.40ch08 gene_region:42713283-42722705 transcript_region:SL2.40ch08:42713283..42722705+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00020676g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|117; (*ITAG) Solyc08g059800.2.1 (e_value=3e-29) genomic_reference:SL2.40ch08 gene_region:42713283-42722705 transcript_region:SL2.40ch08:42713283..42722705+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00020676g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|224144208|ref|XP_002325220.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g015940.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:6283275-6284559 transcript_region:SL2.40ch08:6283275..6284559+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 6 (AHRD V1 *-*- EPFL6_ARATH)"; NbS00012258g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|255585980|ref|XP_002533660.1| (e_value=4e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g007520.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1777779-1778240 transcript_region:SL2.40ch11:1777779..1778240+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047595g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|225423965|ref|XP_002279257.1| (e_value=3e-49) PREDICTED: ethylene-responsive transcription factor ERF118 [Vitis vinifera];; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=5e-24) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=3e-25) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc04g007180.1.1 (e_value=5e-125) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:874498-875505 transcript_region:SL2.40ch04:874498..875505+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00018969g0003.1 protein AED:0.00 eAED:0.00 QI:90|1|0.5|1|0|0|2|50|63; (*ITAG) Solyc09g008520.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:2003633-2012302 transcript_region:SL2.40ch09:2003633..2012302- go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--* B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00018969g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.6|1|1|1|5|0|399; (*GB) gi|297742349|emb|CBI34498.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNP2|GDL75_ARATH (e_value=1e-73) GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1;; (*TAIR) AT4G10950.1 (e_value=0.0) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc08g082490.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62435983-62437555 transcript_region:SL2.40ch08:62435983..62437555- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At5g08460 (AHRD V1 ***- GDL75_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00009113g0011.1 protein AED:0.38 eAED:0.43 QI:225|1|0.5|1|1|0.5|2|0|65; (*GB) gi|282848240|gb|ADB02901.1| (e_value=3e-27) protein transport protein SEC61 subunit gamma [Jatropha curcas];; (*SWP) sp|Q9SW34|S61G1_ARATH (e_value=1e-27) Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=2 SV=1;; (*TAIR) AT5G50460.1 (e_value=8e-29) | Symbols: | secE/sec61-gamma protein transport protein | chr5:20552168-20552509 REVERSE LENGTH=69; NbS00009113g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0.5|1|0|0.5|2|61|227; (*GB) gi|350540630|ref|NP_001234244.1| (e_value=5e-124) CONSTANS interacting protein 2a [Solanum lycopersicum];; (*SWP) sp|Q9SMP0|NFYC1_ARATH (e_value=3e-96) Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1;; (*TAIR) AT3G48590.1 (e_value=2e-97) | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor Y, subunit C1 | chr3:18008893-18009938 REVERSE LENGTH=234;; (*ITAG) Solyc03g110860.2.1 (e_value=1e-127) genomic_reference:SL2.40ch03 gene_region:55647896-55652698 transcript_region:SL2.40ch03:55647896..55652698+ go_terms:GO:0016563,GO:0003700 functional_description:"Nuclear transcription factor Y subunit C-1 (AHRD V1 **** B6SWV5_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0016563,GO:0003700 NbS00009113g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|86 NbS00029187g0010.1 protein AED:0.21 eAED:0.22 QI:0|0.71|0.5|0.87|0.85|0.87|8|0|490; (*GB) gi|225438617|ref|XP_002276726.1| (e_value=0.0) PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q9NQG5|RPR1B_HUMAN (e_value=6e-28) Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1;; (*TAIR) AT5G10060.1 (e_value=2e-135) | Symbols: | ENTH/VHS family protein | chr5:3145994-3148049 REVERSE LENGTH=469;; (*ITAG) Solyc04g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51624812-51630839 transcript_region:SL2.40ch04:51624812..51630839- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00029187g0006.1 protein AED:0.13 eAED:0.30 QI:389|0.8|0.5|1|0.8|0.66|6|0|796; (*GB) gi|359492431|ref|XP_002284257.2| (e_value=3e-96) PREDICTED: uncharacterized protein LOC100248897 [Vitis vinifera];; (*SWP) sp|Q9UKV3|ACINU_HUMAN (e_value=8e-18) Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens GN=ACIN1 PE=1 SV=2;; (*TAIR) AT4G39680.2 (e_value=2e-79) | Symbols: | SAP domain-containing protein | chr4:18414604-18416938 REVERSE LENGTH=633;; (*ITAG) Solyc04g072670.2.1 (e_value=2e-61) genomic_reference:SL2.40ch04 gene_region:57222954-57227125 transcript_region:SL2.40ch04:57222954..57227125- go_terms:GO:0003676 functional_description:"Apoptotic chromatin condensation inducer 1 (Fragment) (AHRD V1 *--- B8JJ88_MOUSE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00029187g0008.1 protein AED:0.00 eAED:0.00 QI:143|1|1|1|1|1|3|170|276; (*GB) gi|225438615|ref|XP_002281012.1| (e_value=1e-155) PREDICTED: uncharacterized oxidoreductase C23D3.11 [Vitis vinifera];; (*SWP) sp|Q09851|AYR1_SCHPO (e_value=2e-33) NADPH-dependent 1-acyldihydroxyacetone phosphate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ayr1 PE=2 SV=2;; (*TAIR) AT5G10050.1 (e_value=2e-135) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3144254-3145643 FORWARD LENGTH=279;; (*ITAG) Solyc04g054400.2.1 (e_value=2e-174) genomic_reference:SL2.40ch04 gene_region:51618048-51623875 transcript_region:SL2.40ch04:51618048..51623875+ go_terms:GO:0000140 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C6PMQ2_9CLOT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0000140 NbS00042956g0010.1 protein AED:0.11 eAED:0.13 QI:0|0.33|0.25|1|1|1|4|0|347; (*GB) gi|357518449|ref|XP_003629513.1| (e_value=4e-161) Major pollen allergen-like protein [Medicago truncatula];; (*SWP) sp|Q9C8G4|PLY4_ARATH (e_value=2e-89) Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1;; (*TAIR) AT5G09280.1 (e_value=3e-122) | Symbols: | Pectin lyase-like superfamily protein | chr5:2880423-2881597 REVERSE LENGTH=297;; (*ITAG) Solyc12g044750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45449215-45451171 transcript_region:SL2.40ch12:45449215..45451171- functional_description:"Pectate lyase family protein (AHRD V1 ***- D7M222_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; NbS00042956g0009.1 protein AED:0.18 eAED:0.18 QI:151|0.77|0.8|1|0.66|0.6|10|541|266; (*GB) gi|297743108|emb|CBI35975.3| (e_value=2e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0E2P1|2ABB_ORYSJ (e_value=8e-131) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1;; (*TAIR) AT1G17720.1 (e_value=9e-131) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=501;; (*ITAG) Solyc12g044800.1.1 (e_value=1e-142) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45580005-45590307 transcript_region:SL2.40ch12:45580005..45590307- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00042956g0011.1 protein AED:0.53 eAED:0.53 QI:0|0|0.33|1|1|0.66|3|18|78; (*GB) gi|343172874|gb|AEL99140.1| (e_value=7e-29) ubiquitin carboxyl-terminal hydrolase, partial [Silene latifolia];; (*SWP) sp|Q949Y0|UBP6_ARATH (e_value=1e-26) Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1;; (*TAIR) AT1G51710.2 (e_value=2e-28) | Symbols: UBP6 | ubiquitin-specific protease 6 | chr1:19175805-19179399 REVERSE LENGTH=443;; (*ITAG) Solyc12g044740.1.1 (e_value=7e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45436676-45448004 transcript_region:SL2.40ch12:45436676..45448004+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N1B6_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00058662g0007.1 protein AED:0.06 eAED:0.06 QI:128|0.85|0.75|1|0.85|0.87|8|617|342; (*GB) gi|225446402|ref|XP_002274667.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100254110 [Vitis vinifera];; (*SWP) sp|Q54HG4|RMP_DICDI (e_value=5e-20) RNA polymerase II subunit 5-mediating protein homolog OS=Dictyostelium discoideum GN=rmp PE=3 SV=2;; (*TAIR) AT1G03760.1 (e_value=3e-47) | Symbols: | Prefoldin chaperone subunit family protein | chr1:941211-943320 REVERSE LENGTH=391;; (*ITAG) Solyc07g053860.2.1 (e_value=1e-111) genomic_reference:SL2.40ch07 gene_region:59592688-59601226 transcript_region:SL2.40ch07:59592688..59601226+ go_terms:GO:0016272 functional_description:"Unconventional prefoldin RPB5 interactor (AHRD V1 *--- RMP_HUMAN); contains Interpro domain(s) IPR004127 Prefoldin alpha-like "; GO:0016272 NbS00006137g0004.1 protein AED:0.12 eAED:0.16 QI:0|1|0|1|1|1|2|0|299; (*GB) gi|255570777|ref|XP_002526341.1| (e_value=2e-54) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT5G07640.1 (e_value=2e-17) | Symbols: | RING/U-box superfamily protein | chr5:2414847-2415876 FORWARD LENGTH=316;; (*ITAG) Solyc06g005000.2.1 (e_value=3e-119) genomic_reference:SL2.40ch06 gene_region:3688-7998 transcript_region:SL2.40ch06:3688..7998+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00005033g0014.1 protein AED:0.05 eAED:0.05 QI:0|1|0.71|1|1|0.85|7|0|529; (*GB) gi|225445198|ref|XP_002280793.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249023 [Vitis vinifera];; (*SWP) sp|Q571G4|LIN54_MOUSE (e_value=2e-36) Protein lin-54 homolog OS=Mus musculus GN=Lin54 PE=2 SV=2;; (*TAIR) AT4G29000.1 (e_value=3e-171) | Symbols: | Tesmin/TSO1-like CXC domain-containing protein | chr4:14293957-14296602 FORWARD LENGTH=603;; (*ITAG) Solyc12g007180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1616773-1625594 transcript_region:SL2.40ch12:1616773..1625594- functional_description:"Tesmin/TSO1-like CXC domain-containing protein (AHRD V1 *--- Q54TZ5_DICDI); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbS00005033g0006.1 protein AED:0.10 eAED:0.18 QI:0|0|0|1|1|1|2|0|259; (*GB) gi|225445192|ref|XP_002284217.1| (e_value=8e-76) PREDICTED: cyclin-dependent kinase F-1 [Vitis vinifera];; (*SWP) sp|O80345|CDKF1_ARATH (e_value=4e-70) Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1;; (*TAIR) AT4G28980.1 (e_value=3e-71) | Symbols: CDKF;1, CAK1AT | CDK-activating kinase 1AT | chr4:14288471-14290102 FORWARD LENGTH=479;; (*ITAG) Solyc12g007200.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1629539-1632295 transcript_region:SL2.40ch12:1629539..1632295- go_terms:GO:0006468 functional_description:"Cell division protein kinase 20 (AHRD V1 *-*- CDK20_DANRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005033g0013.1 protein AED:0.23 eAED:0.24 QI:0|0.87|0.88|1|0.87|0.88|17|406|689; (*GB) gi|224142159|ref|XP_002324426.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPI6|AIM1_ARATH (e_value=0.0) Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1;; (*TAIR) AT4G29010.1 (e_value=0.0) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc12g007170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1605539-1615180 transcript_region:SL2.40ch12:1605539..1615180+ go_terms:GO:0050662,GO:0006631,GO:0008152,GO:0016491 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0050662,GO:0006631,GO:0008152,GO:0016491 NbS00010924g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|225458639|ref|XP_002282817.1| (e_value=6e-47) PREDICTED: transcription factor HEC1 [Vitis vinifera];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=4e-42) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=3e-43) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc02g090950.1.1 (e_value=5e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46991663-46992331 transcript_region:SL2.40ch02:46991663..46992331+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00010924g0001.1 protein AED:0.18 eAED:0.18 QI:124|-1|0|1|-1|1|1|0|120; (*GB) gi|37695575|gb|AAR00327.1| (e_value=5e-39) rapid alkalinization factor 3 [Solanum chacoense];; (*TAIR) AT5G67070.1 (e_value=5e-34) | Symbols: RALFL34 | ralf-like 34 | chr5:26768120-26768509 FORWARD LENGTH=129;; (*ITAG) Solyc02g090960.1.1 (e_value=6e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:46994717-46995070 transcript_region:SL2.40ch02:46994717..46995070+ go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 3 (AHRD V1 ***- Q6TF27_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00032762g0006.1 protein AED:0.04 eAED:0.05 QI:155|0.91|0.88|1|0.83|0.76|25|329|1367; (*GB) gi|356533261|ref|XP_003535184.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase tsuA-like [Glycine max];; (*SWP) sp|Q9NRP7|STK36_HUMAN (e_value=2e-103) Serine/threonine-protein kinase 36 OS=Homo sapiens GN=STK36 PE=1 SV=2;; (*TAIR) AT1G50240.2 (e_value=0.0) | Symbols: FU | Protein kinase family protein with ARM repeat domain | chr1:18607063-18614094 FORWARD LENGTH=1322;; (*ITAG) Solyc03g096890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:52698958-52711178 transcript_region:SL2.40ch03:52698958..52711178- go_terms:GO:0006468 functional_description:"Serine/threonine kinase (AHRD V1 *-*- C4Q278_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032762g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.33|1|1|3|0|169; (*GB) gi|224104321|ref|XP_002313395.1| (e_value=4e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58920.1 (e_value=3e-66) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23793239-23794014 FORWARD LENGTH=162;; (*ITAG) Solyc02g087650.2.1 (e_value=1e-82) genomic_reference:SL2.40ch02 gene_region:44594705-44595462 transcript_region:SL2.40ch02:44594705..44595462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013508g0010.1 protein AED:0.13 eAED:0.13 QI:220|0.8|1|1|1|1|6|944|568; (*GB) gi|225443427|ref|XP_002267835.1| (e_value=3e-176) PREDICTED: uncharacterized protein LOC100244378 [Vitis vinifera];; (*TAIR) AT1G78930.1 (e_value=2e-136) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29678285-29680648 REVERSE LENGTH=591;; (*ITAG) Solyc03g124040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64802905-64811982 transcript_region:SL2.40ch03:64802905..64811982- functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00013508g0014.1 protein AED:0.18 eAED:0.21 QI:0|0.66|0.28|0.85|0.5|0.57|7|0|466; (*GB) gi|297735686|emb|CBI18373.3| (e_value=2e-134) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13062.2 (e_value=2e-109) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:4184777-4187268 FORWARD LENGTH=440;; (*ITAG) Solyc03g124060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64826113-64832080 transcript_region:SL2.40ch03:64826113..64832080- functional_description:"Membrane related protein-like (AHRD V1 ***- B4FW40_MAIZE); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00060316g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|0|0|3|0|575; (*GB) gi|225432664|ref|XP_002278494.1| (e_value=8e-144) PREDICTED: uncharacterized protein LOC100259596 [Vitis vinifera];; (*TAIR) AT3G22430.1 (e_value=5e-126) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | chr3:7953455-7957605 FORWARD LENGTH=510;; (*ITAG) Solyc09g076040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63216517-63225104 transcript_region:SL2.40ch09:63216517..63225104+ functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 homolog (AHRD V1 *--- SGS3_ORYSJ); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00025882g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0|2|277|66; (*GB) gi|147815740|emb|CAN74874.1| (e_value=4e-15) hypothetical protein VITISV_038921 [Vitis vinifera];; (*TAIR) AT3G25670.1 (e_value=5e-15) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:9344532-9346301 REVERSE LENGTH=475;; (*ITAG) Solyc05g009990.2.1 (e_value=2e-23) genomic_reference:SL2.40ch05 gene_region:4190580-4192782 transcript_region:SL2.40ch05:4190580..4192782+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00051311g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|20149046|gb|AAM12778.1| (e_value=2e-46) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=6e-34) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=4e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110630.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:89028143-89028586 transcript_region:SL2.40ch01:89028143..89028586- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00051311g0001.1 protein AED:0.42 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=9e-45) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-33) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=5e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110780.1.1 (e_value=2e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89106505-89106765 transcript_region:SL2.40ch01:89106505..89106765- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00006356g0004.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|193; (*GB) gi|78191410|gb|ABB29926.1| (e_value=9e-102) fructose-bisphosphate aldolase-like [Solanum tuberosum];; (*SWP) sp|P29356|ALF_SPIOL (e_value=2e-88) Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT2G36460.1 (e_value=3e-91) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc10g083570.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62685138-62687861 transcript_region:SL2.40ch10:62685138..62687861- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q308A5_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00024097g0013.1 protein AED:0.18 eAED:0.18 QI:319|1|0.95|1|0.90|0.95|23|575|1542; (*GB) gi|297739617|emb|CBI29799.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXS6|INO80_ARATH (e_value=0.0) DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2;; (*TAIR) AT3G57300.1 (e_value=0.0) | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1507;; (*ITAG) Solyc04g016370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00024097g0012.1 protein AED:0.19 eAED:0.19 QI:71|1|1|1|1|1|8|12|315; (*GB) gi|255577729|ref|XP_002529740.1| (e_value=3e-178) ribosome biogenesis protein brix, putative [Ricinus communis];; (*SWP) sp|Q8UVY2|BRX1_XENLA (e_value=5e-85) Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1;; (*TAIR) AT3G15460.1 (e_value=3e-170) | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:5214279-5216188 REVERSE LENGTH=315;; (*ITAG) Solyc04g016380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7185956-7190322 transcript_region:SL2.40ch04:7185956..7190322- go_terms:GO:0005515 functional_description:"Ribosome biogenesis protein BRX1 (AHRD V1 ***- B3LIY5_YEAS1); contains Interpro domain(s) IPR007109 Brix domain "; GO:0005515 NbS00024097g0008.1 protein AED:0.33 eAED:0.34 QI:0|0.57|0.5|1|0.57|0.37|8|387|269; (*GB) gi|211906482|gb|ACJ11734.1| (e_value=7e-162) S-formylglutathione hydrolase [Gossypium hirsutum];; (*SWP) sp|Q8LAS8|SFGH_ARATH (e_value=2e-151) S-formylglutathione hydrolase OS=Arabidopsis thaliana GN=SFGH PE=1 SV=2;; (*TAIR) AT2G41530.1 (e_value=1e-152) | Symbols: ATSFGH, SFGH | S-formylglutathione hydrolase | chr2:17323656-17325430 REVERSE LENGTH=284;; (*ITAG) Solyc04g016360.2.1 (e_value=6e-176) genomic_reference:SL2.40ch04 gene_region:7158486-7165657 transcript_region:SL2.40ch04:7158486..7165657+ go_terms:GO:0018738 functional_description:"S-formylglutathione hydrolase (AHRD V1 **** D2D314_GOSHI); contains Interpro domain(s) IPR014186 S-formylglutathione hydrolase "; GO:0018738 NbS00054655g0004.1 protein AED:0.20 eAED:0.20 QI:103|0.83|0.85|1|0.83|0.85|7|293|643; (*GB) gi|225464083|ref|XP_002269250.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=8e-37) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT1G51580.1 (e_value=8e-91) | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621;; (*ITAG) Solyc01g106020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85761683-85768311 transcript_region:SL2.40ch01:85761683..85768311+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6U784_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00017537g0009.1 protein AED:0.43 eAED:0.57 QI:0|0|0.2|1|0|0.2|5|176|106; (*GB) gi|301601258|dbj|BAJ13301.1| (e_value=2e-29) autophagy 8 [Ipomoea nil];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=2e-28) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT4G21980.1 (e_value=4e-29) | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily protein | chr4:11655913-11656809 FORWARD LENGTH=122;; (*ITAG) Solyc07g064680.2.1 (e_value=3e-32) genomic_reference:SL2.40ch07 gene_region:63944779-63947783 transcript_region:SL2.40ch07:63944779..63947783+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00011916g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|232; (*ITAG) Solyc04g074620.1.1 (e_value=2e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00029367g0011.1 protein AED:0.03 eAED:0.03 QI:402|0.85|0.87|0.87|0.85|0.5|8|0|397; (*GB) gi|356516478|ref|XP_003526921.1| (e_value=4e-164) PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max];; (*TAIR) AT5G50970.1 (e_value=8e-149) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512;; (*ITAG) Solyc12g042200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42688645-42702623 transcript_region:SL2.40ch12:42688645..42702623+ functional_description:"U5 small nuclear ribonucleoprotein protein (AHRD V1 *--- C1BSR6_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00029367g0013.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.75|0.33|0.75|4|0|181; (*GB) gi|297826811|ref|XP_002881288.1| (e_value=2e-29) hypothetical protein ARALYDRAFT_902429 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G33550.1 (e_value=2e-31) | Symbols: | Homeodomain-like superfamily protein | chr2:14210180-14211487 REVERSE LENGTH=314;; (*ITAG) Solyc03g118230.1.1 (e_value=1e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61212267-61213419 transcript_region:SL2.40ch03:61212267..61213419+ go_terms:GO:0003700 functional_description:"Sh4 homologue protein (AHRD V1 *-*- B6ZKH4_ECHCG); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00029367g0004.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|297; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-22) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g066930.1.1 (e_value=2e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00002845g0016.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|0.66|1|1|3|0|306; (*GB) gi|225426655|ref|XP_002281296.1| (e_value=3e-92) PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=1e-41) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=7e-71) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc08g079720.2.1 (e_value=3e-124) genomic_reference:SL2.40ch08 gene_region:60369075-60370198 transcript_region:SL2.40ch08:60369075..60370198- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00002845g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|222822687|gb|ACM68456.1| (e_value=5e-63) stress-associated protein 6 [Solanum pennellii];; (*SWP) sp|Q6NNI8|SAP1_ARATH (e_value=4e-39) Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1;; (*TAIR) AT1G12440.2 (e_value=3e-40) | Symbols: | A20/AN1-like zinc finger family protein | chr1:4241816-4242322 REVERSE LENGTH=168;; (*ITAG) Solyc08g079700.1.1 (e_value=3e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:60343880-60344377 transcript_region:SL2.40ch08:60343880..60344377+ go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AHRD V1 ***- SAP7_ARATH); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00002845g0017.1 protein AED:0.24 eAED:0.25 QI:200|0.9|0.85|0.95|0.75|0.76|21|0|932; (*GB) gi|255537143|ref|XP_002509638.1| (e_value=0.0) Kinesin heavy chain, putative [Ricinus communis];; (*SWP) sp|Q5VQ09|ARK2_ORYSJ (e_value=0.0) Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1;; (*TAIR) AT1G12430.1 (e_value=0.0) | Symbols: PAK, ARK3 | armadillo repeat kinesin 3 | chr1:4234122-4238552 REVERSE LENGTH=919;; (*ITAG) Solyc08g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60352611-60364478 transcript_region:SL2.40ch08:60352611..60364478+ go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2W5Y5_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00055092g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|551; (*GB) gi|359476425|ref|XP_002263877.2| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q9FFE9|AAE6_ARATH (e_value=0.0) Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1;; (*TAIR) AT5G16340.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:5349255-5350907 REVERSE LENGTH=550;; (*ITAG) Solyc02g037490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21617137-21618795 transcript_region:SL2.40ch02:21617137..21618795- go_terms:GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00013632g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|290578583|gb|ADD51186.1| (e_value=1e-63) tumor-related protein [Vitis cinerea var. helleri x Vitis riparia];; (*SWP) sp|P13087|MIRA_RICDU (e_value=3e-43) Miraculin OS=Richadella dulcifica PE=1 SV=3;; (*TAIR) AT1G17860.1 (e_value=7e-45) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g098670.1.1 (e_value=4e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54409717-54410322 transcript_region:SL2.40ch03:54409717..54410322- go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz trypsin inhibitor (AHRD V1 **** B8Y888_TOBAC); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00013632g0006.1 protein AED:0.07 eAED:0.07 QI:52|1|0.75|1|1|1|4|190|234; (*GB) gi|56542469|gb|AAV92899.1| (e_value=3e-81) Avr9/Cf-9 rapidly elicited protein 140, partial [Nicotiana tabacum];; (*SWP) sp|Q9FTA0|GEML4_ARATH (e_value=1e-50) GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1;; (*TAIR) AT5G08350.1 (e_value=9e-52) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:2686417-2687175 REVERSE LENGTH=222;; (*ITAG) Solyc03g098660.2.1 (e_value=1e-117) genomic_reference:SL2.40ch03 gene_region:54407060-54408908 transcript_region:SL2.40ch03:54407060..54408908+ functional_description:"FIP1 (AHRD V1 **-- B6TFD3_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00009762g0006.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|746; (*GB) gi|225437596|ref|XP_002271113.1| (e_value=0.0) PREDICTED: receptor-like protein kinase ANXUR1-like [Vitis vinifera];; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=0.0) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=0.0) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc06g009540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3533330-3535993 transcript_region:SL2.40ch06:3533330..3535993- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00009762g0013.1 protein AED:0.15 eAED:0.19 QI:0|0|0|1|0.14|0.12|8|0|774; (*GB) gi|359479949|ref|XP_002270640.2| (e_value=5e-67) PREDICTED: DELLA protein GAI1-like [Vitis vinifera];; (*TAIR) AT2G47360.1 (e_value=2e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02570.1); Has 58 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19437820-19438731 FORWARD LENGTH=303;; (*ITAG) Solyc06g009610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3575306-3578741 transcript_region:SL2.40ch06:3575306..3578741+ functional_description:"GRAS transcription factor (Fragment) (AHRD V1 *--- A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00030730g0001.1 protein AED:0.39 eAED:0.53 QI:0|0|0|1|1|1|2|0|60 NbS00024489g0003.1 protein AED:0.13 eAED:0.14 QI:44|1|0.8|1|0.75|0.6|5|0|274; (*GB) gi|118486162|gb|ABK94924.1| (e_value=3e-53) unknown [Populus trichocarpa];; (*TAIR) AT3G12685.1 (e_value=2e-47) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr3:4029245-4030261 REVERSE LENGTH=213;; (*ITAG) Solyc01g005910.2.1 (e_value=5e-132) genomic_reference:SL2.40ch01 gene_region:595042-598983 transcript_region:SL2.40ch01:595042..598983+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 *--- B2A528_NATTJ); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00043806g0015.1 protein AED:0.12 eAED:0.12 QI:311|0.75|0.55|1|0.75|0.66|9|0|752; (*GB) gi|297742175|emb|CBI33962.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-126) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT4G25310.1 (e_value=5e-129) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12949753-12951138 FORWARD LENGTH=353;; (*ITAG) Solyc02g071500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35486559-35488699 transcript_region:SL2.40ch02:35486559..35488699- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00043806g0001.1 protein AED:0.22 eAED:0.25 QI:0|1|0.9|1|1|1|10|272|603; (*GB) gi|297740594|emb|CBI30776.3| (e_value=2e-113) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LS28|GTE12_ARATH (e_value=1e-32) Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2;; (*TAIR) AT5G46550.1 (e_value=1e-33) | Symbols: | DNA-binding bromodomain-containing protein | chr5:18884439-18886503 REVERSE LENGTH=494;; (*ITAG) Solyc02g071510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35489139-35493417 transcript_region:SL2.40ch02:35489139..35493417- functional_description:"Bromodomain-containing protein (AHRD V1 *--- D3B540_POLPA); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00044917g0002.1 protein AED:0.15 eAED:0.15 QI:1700|1|1|1|0.5|0.2|5|628|233; (*GB) gi|297739317|emb|CBI28968.3| (e_value=1e-101) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05280.1 (e_value=8e-88) | Symbols: | Protein of unknown function (DUF604) | chr1:1535444-1537414 REVERSE LENGTH=461;; (*ITAG) Solyc07g052650.1.1 (e_value=3e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58433226-58435409 transcript_region:SL2.40ch07:58433226..58435409+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00044917g0010.1 protein AED:0.23 eAED:0.29 QI:0|0|0|1|0.5|0.33|3|0|458; (*GB) gi|255563409|ref|XP_002522707.1| (e_value=5e-171) Protein cdcH, putative [Ricinus communis];; (*SWP) sp|P54774|CDC48_SOYBN (e_value=4e-109) Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1;; (*TAIR) AT3G53230.1 (e_value=5e-109) | Symbols: | ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815;; (*ITAG) Solyc01g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00007067g0003.1 protein AED:0.04 eAED:0.04 QI:339|1|1|1|0.6|0.5|6|415|262; (*GB) gi|370988685|dbj|BAL43556.1| (e_value=2e-91) type-A response regulator [Petunia x hybrida];; (*SWP) sp|O82798|ARR4_ARATH (e_value=2e-71) Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1;; (*TAIR) AT1G10470.1 (e_value=2e-72) | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regulator 4 | chr1:3442624-3443759 REVERSE LENGTH=259;; (*ITAG) Solyc05g006420.2.1 (e_value=3e-106) genomic_reference:SL2.40ch05 gene_region:1055803-1059192 transcript_region:SL2.40ch05:1055803..1059192+ go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 *-** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00007067g0110.1 protein AED:0.25 eAED:0.25 QI:85|1|1|1|0.9|0.90|11|268|375 NbS00007067g0114.1 protein AED:0.27 eAED:0.29 QI:0|0.62|0.44|0.88|0.62|0.44|9|0|508 NbS00007067g0112.1 protein AED:0.08 eAED:0.08 QI:127|0.66|0.5|1|0.66|0.5|4|222|337 NbS00011674g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|487; (*GB) gi|359475340|ref|XP_003631663.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 4-like [Vitis vinifera];; (*SWP) sp|Q9LN49|KCS4_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1;; (*TAIR) AT1G19440.1 (e_value=0.0) | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516;; (*ITAG) Solyc04g080450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00020251g0010.1 protein AED:0.03 eAED:0.03 QI:44|1|1|1|1|1|2|294|1100; (*GB) gi|357449695|ref|XP_003595124.1| (e_value=5e-91) Disease resistance RPP8-like protein [Medicago truncatula];; (*SWP) sp|Q8W474|DRL7_ARATH (e_value=9e-69) Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4;; (*TAIR) AT1G58390.1 (e_value=7e-70) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21690962-21693891 REVERSE LENGTH=907;; (*ITAG) Solyc03g005670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:481129-483926 transcript_region:SL2.40ch03:481129..483926+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00020251g0011.1 protein AED:0.03 eAED:0.03 QI:0|0.4|0.16|1|0|0.33|6|0|1048; (*GB) gi|224110616|ref|XP_002315579.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33420.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:14158782-14162304 FORWARD LENGTH=1039;; (*ITAG) Solyc03g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:451395-456304 transcript_region:SL2.40ch03:451395..456304- functional_description:"Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00018815g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|305; (*GB) gi|34811740|gb|AAQ82703.1| (e_value=0.0) potyviral capsid protein interacting protein 2b [Nicotiana tabacum];; (*SWP) sp|Q80Y75|DJB13_MOUSE (e_value=5e-76) DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1;; (*TAIR) AT1G10350.1 (e_value=4e-141) | Symbols: | DNAJ heat shock family protein | chr1:3393595-3394860 REVERSE LENGTH=349;; (*ITAG) Solyc05g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1449551-1452844 transcript_region:SL2.40ch05:1449551..1452844+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_THET8); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00018815g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|136; (*GB) gi|351734488|ref|NP_001236052.1| (e_value=8e-41) uncharacterized protein LOC100527691 [Glycine max];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=5e-35) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=4e-36) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc05g006860.2.1 (e_value=2e-72) genomic_reference:SL2.40ch05 gene_region:1482510-1483521 transcript_region:SL2.40ch05:1482510..1483521- go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00049607g0002.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|1|1|2|0|198; (*GB) gi|256274567|gb|ACU68503.1| (e_value=3e-42) WOX3 protein [Petunia x hybrida];; (*SWP) sp|Q9SIB4|WOX3_ARATH (e_value=2e-30) WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2 SV=1;; (*TAIR) AT2G28610.1 (e_value=1e-31) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072770.1.1 (e_value=2e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53058404-53060008 transcript_region:SL2.40ch11:53058404..53060008+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00035223g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|225464017|ref|XP_002265066.1| (e_value=5e-98) PREDICTED: uncharacterized protein LOC100260942 [Vitis vinifera];; (*TAIR) AT5G06990.1 (e_value=2e-86) | Symbols: | Protein of unknown function, DUF617 | chr5:2169699-2170484 FORWARD LENGTH=261;; (*ITAG) Solyc07g065420.1.1 (e_value=5e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64410110-64410823 transcript_region:SL2.40ch07:64410110..64410823- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00035223g0007.1 protein AED:0.41 eAED:0.42 QI:0|0.5|0|0.66|1|1|3|0|122; (*GB) gi|225455513|ref|XP_002265347.1| (e_value=2e-81) PREDICTED: 40S ribosomal protein S20-2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STY6|RS202_ARATH (e_value=2e-77) 40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1;; (*TAIR) AT3G47370.3 (e_value=2e-78) | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:17453671-17454437 REVERSE LENGTH=122;; (*ITAG) Solyc01g096590.2.1 (e_value=9e-79) genomic_reference:SL2.40ch01 gene_region:79418198-79420477 transcript_region:SL2.40ch01:79418198..79420477- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10 (AHRD V1 ***- RS10_CAMFF); contains Interpro domain(s) IPR005729 Ribosomal protein S10, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00033089g0007.1 protein AED:0.40 eAED:0.42 QI:27|0.75|0.4|1|0.75|0.4|5|0|233; (*GB) gi|225425579|ref|XP_002266223.1| (e_value=3e-109) PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera];; (*TAIR) AT1G23440.1 (e_value=3e-108) | Symbols: | Peptidase C15, pyroglutamyl peptidase I-like | chr1:8321940-8324019 FORWARD LENGTH=217;; (*ITAG) Solyc05g005200.2.1 (e_value=1e-126) genomic_reference:SL2.40ch05 gene_region:173412-177352 transcript_region:SL2.40ch05:173412..177352- go_terms:GO:0008233 functional_description:"Pyrrolidone-carboxylate peptidase (AHRD V1 **** B6SP89_MAIZE); contains Interpro domain(s) IPR000816 Peptidase C15, pyroglutamyl peptidase I "; GO:0008233 NbS00057395g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.57|0.12|0.62|1|0.87|8|0|799; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=8e-146) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00017587g0016.1 protein AED:0.43 eAED:0.45 QI:0|1|0.5|1|0|0|2|0|136; (*GB) gi|119675117|gb|ABL89185.1| (e_value=3e-55) squamosa promoter binding protein-like protein [Capsicum annuum];; (*SWP) sp|Q38741|SBP1_ANTMA (e_value=3e-47) Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1;; (*TAIR) AT3G15270.1 (e_value=1e-42) | Symbols: SPL5 | squamosa promoter binding protein-like 5 | chr3:5140624-5141256 REVERSE LENGTH=181;; (*ITAG) Solyc10g009080.2.1 (e_value=1e-67) genomic_reference:SL2.40ch10 gene_region:3108120-3110879 transcript_region:SL2.40ch10:3108120..3110879+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q0PY35_SOLLC); contains Interpro domain(s) IPR017238 Squamosa promoter-binding protein "; GO:0005634 NbS00017587g0018.1 protein AED:0.06 eAED:0.06 QI:153|1|1|1|0.8|0.83|6|1106|661; (*GB) gi|224125542|ref|XP_002329830.1| (e_value=8e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84VG7|C3H27_ARATH (e_value=6e-25) Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis thaliana GN=FES1 PE=2 SV=2;; (*TAIR) AT2G33835.1 (e_value=5e-26) | Symbols: FES1 | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:14312145-14314566 REVERSE LENGTH=587;; (*ITAG) Solyc03g006350.2.1 (e_value=8e-140) genomic_reference:SL2.40ch03 gene_region:943458-946178 transcript_region:SL2.40ch03:943458..946178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 27 (AHRD V1 *-*- C3H27_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00017587g0017.1 protein AED:0.07 eAED:0.10 QI:194|0.85|0.75|1|0.57|0.5|8|442|336; (*GB) gi|224125532|ref|XP_002329828.1| (e_value=1e-152) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54FE6|MCFS_DICDI (e_value=7e-52) Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1;; (*TAIR) AT2G33820.1 (e_value=2e-148) | Symbols: ATMBAC1, MBAC1 | Mitochondrial substrate carrier family protein | chr2:14306293-14308293 REVERSE LENGTH=311;; (*ITAG) Solyc10g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3110650-3114040 transcript_region:SL2.40ch10:3110650..3114040- go_terms:GO:0000064 functional_description:"Mitochondrial ornithine transporter (AHRD V1 **** Q16ZQ7_AEDAE); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0000064 NbS00017587g0019.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|381; (*GB) gi|379056252|dbj|BAL68166.1| (e_value=1e-110) ethylene response factor #111 [Nicotiana tabacum];; (*SWP) sp|Q40477|ERF4_TOBAC (e_value=4e-23) Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1;; (*TAIR) AT5G44210.1 (e_value=3e-24) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc10g009110.1.1 (e_value=2e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00004547g0002.1 protein AED:0.05 eAED:0.06 QI:0|0.75|0.4|1|1|1|5|0|446; (*GB) gi|3122572|sp|Q43644.1|NDUS1_SOLTU (e_value=0.0) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; AltName: Full=76 kDa mitochondrial complex I subunit; AltName: Full=Complex I-76kD; Short=CI-76kD; AltName: Full=NADH-ubiquinone oxidoreductase 76 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43644|NDUS1_SOLTU (e_value=0.0) NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G37510.1 (e_value=0.0) | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897490-14900352 FORWARD LENGTH=745;; (*ITAG) Solyc11g011470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4520459-4526103 transcript_region:SL2.40ch11:4520459..4526103- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 ***- B9T118_RICCO); contains Interpro domain(s) IPR010228 NADH:ubiquinone oxidoreductase, subunit G "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbS00004547g0015.1 protein AED:0.23 eAED:0.24 QI:0|0.92|0.85|1|0.84|0.92|14|0|577; (*GB) gi|225451381|ref|XP_002264144.1| (e_value=0.0) PREDICTED: nicastrin [Vitis vinifera];; (*SWP) sp|Q8GUM5|NICA_ARATH (e_value=0.0) Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1;; (*TAIR) AT3G52640.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=676;; (*ITAG) Solyc11g011480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4526911-4536134 transcript_region:SL2.40ch11:4526911..4536134- go_terms:GO:0031177,GO:0016021 functional_description:"Nicastrin (AHRD V1 ***- A8JFJ5_CHLRE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0031177,GO:0016021 NbS00004547g0019.1 protein AED:0.37 eAED:0.37 QI:0|1|0.75|1|0.33|0.25|4|324|121; (*GB) gi|350537617|ref|NP_001234557.1| (e_value=5e-52) ubiquitin conjugating enzyme 2 [Solanum lycopersicum];; (*SWP) sp|Q9SHI7|UBC34_ARATH (e_value=3e-31) Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1;; (*TAIR) AT1G17280.2 (e_value=3e-32) | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 | chr1:5917146-5919162 REVERSE LENGTH=237;; (*ITAG) Solyc06g063100.2.1 (e_value=3e-64) genomic_reference:SL2.40ch06 gene_region:36248969-36252485 transcript_region:SL2.40ch06:36248969..36252485+ go_terms:GO:0004842 functional_description:"Ubiquitin conjugating enzyme 2 (AHRD V1 **** Q94FU3_SOLLC); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00004547g0017.1 protein AED:0.41 eAED:0.49 QI:0|0.33|0.75|1|0|0.25|4|218|86 NbS00004547g0014.1 protein AED:0.54 eAED:0.71 QI:0|0|0|0.66|0.5|0.66|3|0|126; (*GB) gi|147863345|emb|CAN78361.1| (e_value=4e-24) hypothetical protein VITISV_023417 [Vitis vinifera];; (*SWP) sp|Q8GUM5|NICA_ARATH (e_value=6e-18) Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1;; (*TAIR) AT3G52640.1 (e_value=4e-19) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=676;; (*ITAG) Solyc11g011480.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4526911-4536134 transcript_region:SL2.40ch11:4526911..4536134- go_terms:GO:0031177,GO:0016021 functional_description:"Nicastrin (AHRD V1 ***- A8JFJ5_CHLRE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0031177,GO:0016021 NbS00004547g0007.1 protein AED:0.39 eAED:0.43 QI:0|0|0|1|1|1|2|0|290; (*GB) gi|12003386|gb|AAG43550.1|AF211532_1 (e_value=3e-66) Avr9/Cf-9 rapidly elicited protein 132 [Nicotiana tabacum];; (*SWP) sp|P0C035|ATL60_ARATH (e_value=1e-40) RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1;; (*TAIR) AT1G53820.1 (e_value=9e-42) | Symbols: | RING/U-box superfamily protein | chr1:20091491-20092423 FORWARD LENGTH=310;; (*ITAG) Solyc06g063110.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36253252-36254124 transcript_region:SL2.40ch06:36253252..36254124- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012443g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|419; (*GB) gi|255573101|ref|XP_002527480.1| (e_value=4e-29) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZF8|FB44_ARATH (e_value=3e-17) Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1;; (*TAIR) AT1G47790.1 (e_value=2e-18) | Symbols: | F-box and associated interaction domains-containing protein | chr1:17600004-17601173 REVERSE LENGTH=389;; (*ITAG) Solyc02g070620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00049029g0006.1 protein AED:0.12 eAED:0.12 QI:257|0.75|0.8|1|0.5|0.6|5|300|302; (*GB) gi|4097585|gb|AAD09518.1| (e_value=3e-101) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|O81025|P2A03_ARATH (e_value=3e-58) Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=6e-70) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc06g064920.1.1 (e_value=4e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36869170-36871075 transcript_region:SL2.40ch06:36869170..36871075+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 ***- Q3SX31_BOVIN); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00049029g0005.1 protein AED:0.23 eAED:0.91 QI:0|0|0|1|0|0|2|0|260; (*GB) gi|147775767|emb|CAN64799.1| (e_value=1e-114) hypothetical protein VITISV_017318 [Vitis vinifera];; (*SWP) sp|O82491|SPT16_ARATH (e_value=7e-110) FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1;; (*TAIR) AT4G10710.1 (e_value=6e-111) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101030.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:82651948-82655945 transcript_region:SL2.40ch01:82651948..82655945- go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00052057g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|260; (*GB) gi|147845949|emb|CAN82027.1| (e_value=9e-107) hypothetical protein VITISV_000612 [Vitis vinifera];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=7e-74) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=4e-72) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc03g121100.2.1 (e_value=3e-155) genomic_reference:SL2.40ch03 gene_region:63376129-63377332 transcript_region:SL2.40ch03:63376129..63377332- go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- O49855_SOYBN); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00001628g0001.1 protein AED:0.24 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|219; (*GB) gi|15209179|gb|AAK91897.1|AC091627_10 (e_value=3e-51) Hsp20/alpha crystallin family protein [Solanum demissum];; (*TAIR) AT2G27140.1 (e_value=1e-14) | Symbols: | HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224;; (*ITAG) Solyc01g009200.2.1 (e_value=4e-70) genomic_reference:SL2.40ch01 gene_region:3240198-3241560 transcript_region:SL2.40ch01:3240198..3241560- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K219_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00001628g0007.1 protein AED:0.11 eAED:0.12 QI:15|0.62|0.33|0.88|0.62|0.66|9|0|545; (*GB) gi|357443935|ref|XP_003592245.1| (e_value=3e-34) Double-stranded RNA binding protein [Medicago truncatula];; (*SWP) sp|Q9LJF5|DRB3_ARATH (e_value=9e-13) Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1;; (*TAIR) AT3G26932.2 (e_value=7e-14) | Symbols: DRB3 | dsRNA-binding protein 3 | chr3:9930460-9931714 REVERSE LENGTH=359;; (*ITAG) Solyc01g009190.1.1 (e_value=3e-121) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3237158-3239698 transcript_region:SL2.40ch01:3237158..3239698+ go_terms:GO:0005515,GO:0003725 functional_description:"Double-stranded RNA binding protein (AHRD V1 *-** A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005515,GO:0003725 NbS00053333g0004.1 protein AED:0.22 eAED:0.22 QI:4|0.66|0.5|1|0.44|0.4|10|0|555; (*GB) gi|225423893|ref|XP_002281668.1| (e_value=0.0) PREDICTED: Di-glucose binding protein with Leucine-rich repeat domain-like [Vitis vinifera];; (*SWP) sp|O64556|Y2923_ARATH (e_value=2e-22) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana GN=At2g19230 PE=2 SV=3;; (*TAIR) AT1G25570.1 (e_value=0.0) | Symbols: | Di-glucose binding protein with Leucine-rich repeat domain | chr1:8992183-8995430 REVERSE LENGTH=628;; (*ITAG) Solyc05g009800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4015410-4023011 transcript_region:SL2.40ch05:4015410..4023011- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00000341g0006.1 protein AED:0.03 eAED:0.03 QI:372|1|0.6|1|1|1|5|0|647; (*GB) gi|359496360|ref|XP_003635218.1| (e_value=0.0) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera];; (*SWP) sp|Q84JR9|TTL4_ARATH (e_value=1e-93) TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1;; (*TAIR) AT5G65160.1 (e_value=0.0) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g055000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52677997-52681378 transcript_region:SL2.40ch04:52677997..52681378- go_terms:GO:0030544 functional_description:"Tetratricopeptide repeat protein 4 homolog (AHRD V1 *--- TTC4_DICDI); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544 NbS00000341g0004.1 protein AED:0.27 eAED:0.27 QI:255|1|1|1|0.83|0.71|7|721|237; (*GB) gi|359496353|ref|XP_003635216.1| (e_value=1e-80) PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8LAL0|SCO12_ARATH (e_value=5e-63) Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1;; (*TAIR) AT4G39740.1 (e_value=4e-64) | Symbols: | Thioredoxin superfamily protein | chr4:18435586-18437095 REVERSE LENGTH=276;; (*ITAG) Solyc04g055010.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:52686505-52690885 transcript_region:SL2.40ch04:52686505..52690885- go_terms:GO:0008379,GO:0016531 functional_description:"Copper chaperone SCO1 (AHRD V1 *--* D3NSK1_AZOS1); contains Interpro domain(s) IPR003782 Copper chaperone SCO1/SenC "; GO:0008379,GO:0016531 NbS00005004g0004.1 protein AED:0.05 eAED:0.05 QI:213|0.83|0.85|1|0.16|0.42|7|348|194; (*GB) gi|1370276|emb|CAA65288.1| (e_value=8e-118) MADS-box protein [Nicotiana tabacum];; (*SWP) sp|Q07472|MADS1_PETHY (e_value=7e-118) Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1;; (*TAIR) AT3G54340.1 (e_value=5e-73) | Symbols: AP3, ATAP3 | K-box region and MADS-box transcription factor family protein | chr3:20119428-20121087 REVERSE LENGTH=232;; (*ITAG) Solyc04g081000.2.1 (e_value=5e-112) genomic_reference:SL2.40ch04 gene_region:62653318-62656888 transcript_region:SL2.40ch04:62653318..62656888+ go_terms:GO:0003677 functional_description:"MADS box transcription factor (AHRD V1 ***- Q8L5F5_DAUCA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0003677 NbS00005004g0109.1 protein AED:0.09 eAED:0.20 QI:29|0|0|0.8|0|0.4|5|0|445 NbS00005004g0110.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|3|0|399 NbS00033026g0010.1 protein AED:0.00 eAED:0.00 QI:128|1|1|1|1|1|2|95|395; (*GB) gi|357115694|ref|XP_003559621.1| (e_value=5e-21) PREDICTED: uncharacterized protein LOC100844020 [Brachypodium distachyon];; (*TAIR) AT5G04890.1 (e_value=3e-16) | Symbols: RTM2 | HSP20-like chaperones superfamily protein | chr5:1427217-1428390 FORWARD LENGTH=366;; (*ITAG) Solyc01g096960.2.1 (e_value=8e-149) genomic_reference:SL2.40ch01 gene_region:79722720-79724375 transcript_region:SL2.40ch01:79722720..79724375- functional_description:"22.7 kDa class IV heat shock protein (AHRD V1 *--- HSP41_PEA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00033026g0015.1 protein AED:0.21 eAED:0.22 QI:241|0.8|0.5|1|0.6|0.66|6|0|542; (*GB) gi|147801381|emb|CAN70287.1| (e_value=0.0) hypothetical protein VITISV_003927 [Vitis vinifera];; (*SWP) sp|Q15291|RBBP5_HUMAN (e_value=7e-76) Retinoblastoma-binding protein 5 OS=Homo sapiens GN=RBBP5 PE=1 SV=2;; (*TAIR) AT3G21060.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:7377822-7379942 FORWARD LENGTH=547;; (*ITAG) Solyc01g096950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79714818-79722380 transcript_region:SL2.40ch01:79714818..79722380+ go_terms:GO:0005515 functional_description:"Retinoblastoma-binding protein-like (AHRD V1 **-* Q9LJC6_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515 NbS00033026g0011.1 protein AED:0.23 eAED:0.24 QI:297|0.75|0.6|1|0.75|0.6|5|0|497; (*GB) gi|225459441|ref|XP_002285827.1| (e_value=1e-179) PREDICTED: vacuolar protein sorting-associated protein 9A isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=7e-155) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.1 (e_value=5e-156) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520;; (*ITAG) Solyc01g096990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00002369g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|356543078|ref|XP_003539990.1| (e_value=9e-35) PREDICTED: uncharacterized protein LOC100805066 [Glycine max];; (*TAIR) AT1G06340.1 (e_value=5e-32) | Symbols: | Plant Tudor-like protein | chr1:1933583-1933987 REVERSE LENGTH=134;; (*ITAG) Solyc06g072450.1.1 (e_value=6e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41080201-41080725 transcript_region:SL2.40ch06:41080201..41080725- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00002447g0005.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|679; (*GB) gi|255573374|ref|XP_002527613.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT3G29400.1 (e_value=0.0) | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo70 family protein E1 | chr3:11297339-11299315 REVERSE LENGTH=658;; (*ITAG) Solyc02g088800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45346206-45348185 transcript_region:SL2.40ch02:45346206..45348185- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00002447g0006.1 protein AED:0.16 eAED:0.17 QI:117|1|0.8|1|0.75|0.8|5|0|308; (*GB) gi|15822703|gb|AAL07518.1| (e_value=8e-67) RNA-binding protein precursor [Nicotiana tabacum];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=8e-31) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G61030.1 (e_value=1e-43) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00002447g0019.1 protein AED:0.23 eAED:0.23 QI:0|0.69|0.71|1|0.92|1|14|107|458; (*GB) gi|225451717|ref|XP_002279575.1| (e_value=0.0) PREDICTED: ribosome biogenesis protein WDR12 homolog [Vitis vinifera];; (*SWP) sp|A8IR43|WDR12_CHLRE (e_value=6e-64) Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2;; (*TAIR) AT5G15550.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:5059051-5062003 REVERSE LENGTH=433;; (*ITAG) Solyc01g111030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89203372-89208190 transcript_region:SL2.40ch01:89203372..89208190+ go_terms:GO:0005515,GO:0000166 functional_description:"Ribosome biogenesis protein ytm1 (AHRD V1 **-- C8V8H1_EMENI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00002447g0020.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0.33|3|0|254; (*GB) gi|224141477|ref|XP_002324098.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SGA8|U83A1_ARATH (e_value=5e-54) UDP-glycosyltransferase 83A1 OS=Arabidopsis thaliana GN=UGT83A1 PE=2 SV=1;; (*TAIR) AT3G02100.1 (e_value=4e-55) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:368840-370484 REVERSE LENGTH=464;; (*ITAG) Solyc02g088750.1.1 (e_value=2e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45304319-45306589 transcript_region:SL2.40ch02:45304319..45306589- go_terms:GO:0008194 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **** Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008194 NbS00002447g0004.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|255570300|ref|XP_002526110.1| (e_value=1e-23) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g088740.1.1 (e_value=1e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:45301650-45301943 transcript_region:SL2.40ch02:45301650..45301943+ functional_description:"Genomic DNA chromosome 5 TAC clone K3 (AHRD V1 ***- Q9FL84_ARATH)"; NbS00004372g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|402; (*GB) gi|225465249|ref|XP_002268014.1| (e_value=6e-167) PREDICTED: uncharacterized protein LOC100250508 [Vitis vinifera];; (*TAIR) AT1G10280.1 (e_value=9e-166) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3366795-3368739 REVERSE LENGTH=412;; (*ITAG) Solyc01g103150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83577505-83582190 transcript_region:SL2.40ch01:83577505..83582190+ functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00004372g0004.1 protein AED:0.10 eAED:0.25 QI:0|1|0|1|1|1|2|0|972; (*GB) gi|46095227|gb|AAS80150.1| (e_value=0.0) ACT11D09.4 [Cucumis melo];; (*SWP) sp|Q9SY69|PPR29_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1;; (*TAIR) AT1G10270.1 (e_value=0.0) | Symbols: GRP23 | glutamine-rich protein 23 | chr1:3363535-3366276 FORWARD LENGTH=913;; (*ITAG) Solyc01g103160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83583662-83587534 transcript_region:SL2.40ch01:83583662..83587534- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LST4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00004372g0007.1 protein AED:0.28 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|77 NbS00004372g0008.1 protein AED:0.72 eAED:0.81 QI:0|0|0|0.5|1|1|4|0|119 NbS00003357g0008.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.5|0.75|0.66|0.5|4|126|246; (*GB) gi|225428651|ref|XP_002281560.1| (e_value=3e-108) PREDICTED: uncharacterized protein LOC100243476 [Vitis vinifera];; (*TAIR) AT3G44150.1 (e_value=4e-104) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11800.1); Has 76 Blast hits to 75 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:15887617-15888728 FORWARD LENGTH=246;; (*ITAG) Solyc10g050450.1.1 (e_value=8e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45240476-45242855 transcript_region:SL2.40ch10:45240476..45242855+ functional_description:"Expp1 protein (AHRD V1 ***- B6T683_MAIZE)"; NbS00003357g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0.5|1|0|0.5|2|61|291; (*GB) gi|224103493|ref|XP_002313078.1| (e_value=2e-119) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49470.1 (e_value=9e-90) | Symbols: | Family of unknown function (DUF716) | chr1:18310554-18311462 FORWARD LENGTH=302;; (*ITAG) Solyc10g050430.1.1 (e_value=7e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45226981-45227862 transcript_region:SL2.40ch10:45226981..45227862+ go_terms:GO:0006810 functional_description:"Plant viral-response family protein (AHRD V1 **-- B6SQA7_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; GO:0006810 NbS00039716g0007.1 protein AED:0.41 eAED:0.41 QI:0|0.85|0.87|0.87|0.71|0.75|8|0|231; (*GB) gi|224128476|ref|XP_002329013.1| (e_value=6e-132) predicted protein [Populus trichocarpa];; (*TAIR) AT1G52510.1 (e_value=8e-126) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:19563039-19565260 REVERSE LENGTH=380;; (*ITAG) Solyc06g068220.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:38650988-38657598 transcript_region:SL2.40ch06:38650988..38657598+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KJH6_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00046162g0006.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|2|0|126; (*GB) gi|255586840|ref|XP_002534031.1| (e_value=1e-49) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70780.1 (e_value=7e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc02g091540.2.1 (e_value=2e-63) genomic_reference:SL2.40ch02 gene_region:47381016-47381951 transcript_region:SL2.40ch02:47381016..47381951+ functional_description:"Senescence-associated protein (AHRD V1 **-- B6UEV1_MAIZE)"; NbS00046162g0011.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0|2|0|135; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-17) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc00g027120.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00046162g0008.1 protein AED:0.37 eAED:0.44 QI:0|0|0|0.5|0|0|2|0|103 NbS00046162g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|0|0|2|0|96; (*GB) gi|54261828|gb|AAV31178.1| (e_value=3e-17) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc03g093100.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00014574g0013.1 protein AED:0.35 eAED:0.40 QI:274|0.6|0.5|1|0.4|0.5|6|148|173; (*GB) gi|255567174|ref|XP_002524568.1| (e_value=2e-25) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g082830.2.1 (e_value=2e-50) genomic_reference:SL2.40ch06 gene_region:44784361-44787512 transcript_region:SL2.40ch06:44784361..44787512- functional_description:"Iron-stress related protein (AHRD V1 ***- B4FBU5_MAIZE)"; NbS00014574g0012.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|79; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-15) hypothetical protein [Nicotiana tabacum]; NbS00014574g0020.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.75|4|0|174; (*GB) gi|224131954|ref|XP_002321219.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04039.1 (e_value=4e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 159 Blast hits to 159 proteins in 52 species: Archae - 0; Bacteria - 76; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:1333464-1334438 FORWARD LENGTH=199;; (*ITAG) Solyc09g018890.2.1 (e_value=5e-57) genomic_reference:SL2.40ch09 gene_region:17714897-17716024 transcript_region:SL2.40ch09:17714897..17716024+ functional_description:"Genome sequencing data contig C320 (AHRD V1 ***- A8YJ83_MICAE)"; NbS00014574g0021.1 protein AED:0.35 eAED:0.37 QI:0|0.45|0.25|0.91|0.36|0.41|12|0|351; (*GB) gi|356507058|ref|XP_003522288.1| (e_value=6e-146) PREDICTED: MLO-like protein 1-like [Glycine max];; (*SWP) sp|O49621|MLO1_ARATH (e_value=6e-133) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=5e-134) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc08g015870.2.1 (e_value=2e-131) genomic_reference:SL2.40ch08 gene_region:6074040-6078983 transcript_region:SL2.40ch08:6074040..6078983- go_terms:GO:0016021 functional_description:"MLO-like protein 7 (AHRD V1 ***- C6EWE8_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00014574g0018.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-24) hypothetical protein [Nicotiana tabacum]; NbS00014574g0016.1 protein AED:0.43 eAED:0.51 QI:0|0|0|1|0|0|2|0|62 NbS00025429g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|302143314|emb|CBI21875.3| (e_value=4e-88) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XIL9|PLRX3_ARATH (e_value=1e-63) Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1;; (*TAIR) AT4G28380.1 (e_value=3e-85) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:14039756-14040931 REVERSE LENGTH=391;; (*ITAG) Solyc07g053840.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59575435-59576559 transcript_region:SL2.40ch07:59575435..59576559+ go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00025429g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|313; (*GB) gi|126143476|dbj|BAF47277.1| (e_value=2e-148) lectin-receptor like protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9S9U1|LRK71_ARATH (e_value=2e-82) L-type lectin-domain containing receptor kinase VII.1 OS=Arabidopsis thaliana GN=LECRK71 PE=2 SV=1;; (*TAIR) AT4G04960.1 (e_value=1e-83) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr4:2533096-2535156 FORWARD LENGTH=686;; (*ITAG) Solyc02g078170.1.1 (e_value=2e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00001414g0006.1 protein AED:0.01 eAED:0.01 QI:26|1|0.8|1|1|1|5|0|198; (*GB) gi|224130228|ref|XP_002320784.1| (e_value=1e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|P93788|REMO_SOLTU (e_value=2e-41) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT2G45820.1 (e_value=3e-42) | Symbols: | Remorin family protein | chr2:18863147-18864576 REVERSE LENGTH=190;; (*ITAG) Solyc05g048820.2.1 (e_value=4e-51) genomic_reference:SL2.40ch05 gene_region:58663878-58666484 transcript_region:SL2.40ch05:58663878..58666484+ go_terms:GO:0005515,GO:0003677 functional_description:"Remorin 2 (AHRD V1 ***- Q9XEX9_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0005515,GO:0003677 NbS00001414g0009.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0.33|0|4|0|217; (*GB) gi|327412655|emb|CCA29116.1| (e_value=8e-15) putative MYB transcription factor [Rosa hybrid cultivar];; (*ITAG) Solyc01g094360.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:77639294-77641524 transcript_region:SL2.40ch01:77639294..77641524+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00001414g0002.1 protein AED:0.43 eAED:0.43 QI:0|0.66|0.71|0.85|1|1|7|33|360; (*GB) gi|255541534|ref|XP_002511831.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q6H7S2|RH8_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2;; (*TAIR) AT4G00660.1 (e_value=0.0) | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505;; (*ITAG) Solyc10g017530.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5410144-5419713 transcript_region:SL2.40ch10:5410144..5419713+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA Helicase (AHRD V1 **** Q7PDT0_PLAYO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00040802g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|334; (*GB) gi|350534726|ref|NP_001234668.1| (e_value=0.0) galactinol synthase [Solanum lycopersicum];; (*SWP) sp|Q9LSB1|GUX1_ARATH (e_value=9e-14) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1;; (*TAIR) AT2G47180.1 (e_value=0.0) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc02g084980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42590167-42591767 transcript_region:SL2.40ch02:42590167..42591767- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- C7G304_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00020804g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|225441002|ref|XP_002283652.1| (e_value=2e-100) PREDICTED: peroxiredoxin-2E, chloroplastic [Vitis vinifera];; (*SWP) sp|Q7F8S5|PR2E2_ORYSJ (e_value=1e-88) Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1;; (*TAIR) AT3G52960.1 (e_value=5e-89) | Symbols: | Thioredoxin superfamily protein | chr3:19639699-19640403 FORWARD LENGTH=234;; (*ITAG) Solyc10g083650.1.1 (e_value=2e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62763114-62763800 transcript_region:SL2.40ch10:62763114..62763800- go_terms:GO:0016491,GO:0045454 functional_description:"Peroxiredoxin ahpC/TSA family (AHRD V1 **-- Q1YGN4_MOBAS); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00020804g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.5|1|1|1|6|0|289; (*GB) gi|225441006|ref|XP_002283672.1| (e_value=3e-177) PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Vitis vinifera];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=2e-169) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=2e-170) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00020804g0010.1 protein AED:0.20 eAED:0.29 QI:0|0.36|0.41|0.91|0.90|0.91|12|77|321; (*GB) gi|18175728|gb|AAL59917.1| (e_value=2e-157) putative enolase (2-phospho-D-glycerate hydroylase) [Arabidopsis thaliana];; (*SWP) sp|P25696|ENO2_ARATH (e_value=1e-135) Bifunctional enolase 2/transcriptional activator OS=Arabidopsis thaliana GN=ENO2 PE=1 SV=1;; (*TAIR) AT2G36530.1 (e_value=8e-137) | Symbols: LOS2, ENO2 | Enolase | chr2:15321081-15323786 REVERSE LENGTH=444;; (*ITAG) Solyc10g085550.1.1 (e_value=7e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63996015-64000623 transcript_region:SL2.40ch10:63996015..64000623+ go_terms:GO:0000015 functional_description:"Enolase (AHRD V1 ***- C5J0G6_TOBAC); contains Interpro domain(s) IPR000941 Enolase "; GO:0000015 NbS00053758g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|0.75|4|0|223; (*GB) gi|224090695|ref|XP_002309063.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT2G29050.1 (e_value=1e-64) | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12478245-12480121 FORWARD LENGTH=389;; (*ITAG) Solyc09g010880.2.1 (e_value=8e-99) genomic_reference:SL2.40ch09 gene_region:4210208-4220467 transcript_region:SL2.40ch09:4210208..4220467- go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7LUM3_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00014537g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.8|0.83|6|688|306; (*GB) gi|359477935|ref|XP_003632043.1| (e_value=9e-101) PREDICTED: LOW QUALITY PROTEIN: Werner Syndrome-like exonuclease-like [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=1e-77) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT4G13870.2 (e_value=1e-78) | Symbols: WRNEXO | Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=288;; (*ITAG) Solyc09g092340.2.1 (e_value=2e-161) genomic_reference:SL2.40ch09 gene_region:66820687-66824709 transcript_region:SL2.40ch09:66820687..66824709- go_terms:GO:0008408 functional_description:"3&apos-5&apos exonuclease domain protein (AHRD V1 *-** D7IW34_9BACE); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0008408 NbS00014537g0002.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|1|1|3|0|84 NbS00014537g0006.1 protein AED:0.15 eAED:0.34 QI:0|0|0|1|0|0|3|0|156; (*ITAG) Solyc09g092350.1.1 (e_value=5e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:66825260-66825919 transcript_region:SL2.40ch09:66825260..66825919- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00024917g0004.1 protein AED:0.44 eAED:0.49 QI:0|0|0|1|0|0|2|0|27 NbS00044447g0006.1 protein AED:0.09 eAED:0.11 QI:361|0.5|0.66|1|1|1|3|0|279; (*GB) gi|350537881|ref|NP_001234571.1| (e_value=1e-87) homeodomain protein [Solanum lycopersicum];; (*SWP) sp|Q940J1|ATB16_ARATH (e_value=2e-40) Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2;; (*TAIR) AT4G40060.1 (e_value=2e-41) | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein 16 | chr4:18571682-18572774 REVERSE LENGTH=294;; (*ITAG) Solyc04g074700.2.1 (e_value=1e-111) genomic_reference:SL2.40ch04 gene_region:58209625-58212759 transcript_region:SL2.40ch04:58209625..58212759- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00038463g0006.1 protein AED:0.23 eAED:0.23 QI:292|1|1|1|1|1|4|385|146; (*GB) gi|388502304|gb|AFK39218.1| (e_value=6e-100) unknown [Lotus japonicus];; (*SWP) sp|Q9SVD7|UEV1D_ARATH (e_value=4e-97) Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1;; (*TAIR) AT3G52560.1 (e_value=3e-98) | Symbols: UEV1D-4, MMZ4, UEV1D | ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=146;; (*ITAG) Solyc10g083120.1.1 (e_value=4e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62310434-62314944 transcript_region:SL2.40ch10:62310434..62314944- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme family protein-like (AHRD V1 ***- Q3HVN0_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00038463g0004.1 protein AED:0.39 eAED:0.45 QI:0|0|0|1|1|1|3|0|107; (*GB) gi|147856870|emb|CAN79170.1| (e_value=5e-19) hypothetical protein VITISV_012166 [Vitis vinifera];; (*TAIR) AT3G11600.1 (e_value=1e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3667337-3667690 FORWARD LENGTH=117;; (*ITAG) Solyc01g007870.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:2032117-2032858 transcript_region:SL2.40ch01:2032117..2032858- functional_description:"Cyclin B-like protein (AHRD V1 *-*- Q5U8T5_9SOLA)"; NbS00002758g0009.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|1|1|3|0|592; (*GB) gi|30016894|gb|AAP03997.1| (e_value=3e-180) EIL1 [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=9e-69) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=6e-70) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc01g009170.2.1 (e_value=2e-139) genomic_reference:SL2.40ch01 gene_region:3203718-3206211 transcript_region:SL2.40ch01:3203718..3206211- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00002758g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0.22|1|0.37|0.44|9|0|617; (*GB) gi|114053441|gb|AAK91899.2|AC091627_12 (e_value=0.0) hypothetical protein SDM1_2t00007 [Solanum demissum];; (*SWP) sp|Q5XVF0|MEE12_ARATH (e_value=5e-113) TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Arabidopsis thaliana GN=MEE12 PE=1 SV=1;; (*TAIR) AT2G02955.1 (e_value=4e-114) | Symbols: MEE12 | maternal effect embryo arrest 12 | chr2:859592-861772 FORWARD LENGTH=666;; (*ITAG) Solyc11g071540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52057345-52061757 transcript_region:SL2.40ch11:52057345..52061757+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059402g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|527; (*GB) gi|225425734|ref|XP_002271313.1| (e_value=6e-169) PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZVG8|PPR60_ARATH (e_value=8e-151) Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1;; (*TAIR) AT1G26900.1 (e_value=6e-152) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:9319756-9321474 REVERSE LENGTH=572;; (*ITAG) Solyc01g010510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5508421-5510219 transcript_region:SL2.40ch01:5508421..5510219- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KPN1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00015150g0015.1 protein AED:0.17 eAED:0.18 QI:0|0.61|0.42|1|0.92|0.92|14|0|1668; (*GB) gi|225428344|ref|XP_002280001.1| (e_value=0.0) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Vitis vinifera];; (*SWP) sp|Q9Y6D6|BIG1_HUMAN (e_value=0.0) Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Homo sapiens GN=ARFGEF1 PE=1 SV=2;; (*TAIR) AT4G38200.1 (e_value=0.0) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:17915293-17922502 FORWARD LENGTH=1687;; (*ITAG) Solyc01g112350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90197517-90206578 transcript_region:SL2.40ch01:90197517..90206578+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 *--* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00015150g0016.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.66|0|0.33|3|0|329; (*GB) gi|225428354|ref|XP_002283202.1| (e_value=2e-112) PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=1e-90) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=8e-92) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g112320.2.1 (e_value=8e-155) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00015150g0022.1 protein AED:0.23 eAED:0.33 QI:0|0.77|0.5|1|0.77|0.8|10|421|515; (*GB) gi|359476996|ref|XP_002263596.2| (e_value=4e-122) PREDICTED: AT-rich interactive domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|Q940Y3|ARID3_ARATH (e_value=2e-104) AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1;; (*TAIR) AT2G17410.2 (e_value=3e-106) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr2:7559869-7563474 FORWARD LENGTH=780;; (*ITAG) Solyc04g082820.2.1 (e_value=9e-106) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00030909g0004.1 protein AED:0.15 eAED:0.17 QI:0|1|0.83|1|1|1|6|539|212; (*GB) gi|359484620|ref|XP_002277580.2| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100256095 [Vitis vinifera];; (*ITAG) Solyc07g042280.2.1 (e_value=1e-91) genomic_reference:SL2.40ch07 gene_region:52735104-52737234 transcript_region:SL2.40ch07:52735104..52737234+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001700g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|0.66|1|1|3|0|264; (*GB) gi|196259694|dbj|BAG68655.1| (e_value=9e-148) jasmonate ZIM-domain protein 1 [Nicotiana tabacum];; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=1e-38) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1;; (*TAIR) AT1G19180.1 (e_value=8e-40) | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253;; (*ITAG) Solyc12g009220.1.1 (e_value=9e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2502555-2504617 transcript_region:SL2.40ch12:2502555..2504617+ go_terms:GO:0005515 functional_description:"Jasmonate ZIM-domain protein 1 (AHRD V1 **-- A7XXZ0_SOLLC); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00001700g0013.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-20) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00001700g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|156571764|gb|ABU84809.1| (e_value=2e-71) putative dehydration-responsive element binding protein [Broussonetia papyrifera];; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=3e-57) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1;; (*TAIR) AT1G19210.1 (e_value=2e-58) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:6626973-6627530 REVERSE LENGTH=185;; (*ITAG) Solyc12g009240.1.1 (e_value=5e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2519864-2520610 transcript_region:SL2.40ch12:2519864..2520610- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001700g0014.1 protein AED:0.18 eAED:0.18 QI:86|1|1|1|1|1|12|306|406; (*GB) gi|6996560|emb|CAB75429.1| (e_value=0.0) oligouridylate binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=2e-63) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT1G17370.1 (e_value=0.0) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419;; (*ITAG) Solyc07g042180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52516019-52522887 transcript_region:SL2.40ch07:52516019..52522887- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **** A8N215_COPC7); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00013850g0003.1 protein AED:0.11 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|580; (*GB) gi|255586815|ref|XP_002534021.1| (e_value=9e-148) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G71850.1 (e_value=2e-141) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:27024875-27026287 REVERSE LENGTH=470;; (*ITAG) Solyc06g034230.1.1 (e_value=1e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20656809-20659051 transcript_region:SL2.40ch06:20656809..20659051- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00013322g0001.1 protein AED:0.16 eAED:0.17 QI:22|0.66|0.68|1|0.66|0.63|19|3007|1430; (*GB) gi|255541176|ref|XP_002511652.1| (e_value=0.0) nucleotidyltransferase, putative [Ricinus communis];; (*TAIR) AT4G00060.1 (e_value=0.0) | Symbols: MEE44 | Nucleotidyltransferase family protein | chr4:21437-27996 FORWARD LENGTH=1481;; (*ITAG) Solyc01g090860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76330161-76348155 transcript_region:SL2.40ch01:76330161..76348155+ go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 *--- TRF5_YEAST); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0016779 NbS00013322g0012.1 protein AED:0.24 eAED:0.24 QI:64|1|1|1|0.8|0.66|6|232|195; (*GB) gi|356506432|ref|XP_003521987.1| (e_value=4e-77) PREDICTED: putative Holliday junction resolvase-like [Glycine max];; (*TAIR) AT1G12244.1 (e_value=3e-59) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:4157719-4158893 FORWARD LENGTH=254;; (*ITAG) Solyc01g090880.2.1 (e_value=2e-109) genomic_reference:SL2.40ch01 gene_region:76350870-76353734 transcript_region:SL2.40ch01:76350870..76353734- go_terms:GO:0003676,GO:0005737,GO:0006139 functional_description:"Holliday junction resolvase (AHRD V1 ***- B6TEN1_MAIZE); contains Interpro domain(s) IPR005227 Resolvase, holliday junction-type, YqgF-like "; GO:0003676,GO:0005737,GO:0006139 NbS00000014g0221.1 protein AED:0.15 eAED:0.15 QI:64|0.88|0.77|1|0.70|0.71|35|268|1774 NbS00000014g0222.1 protein AED:0.72 eAED:0.89 QI:0|0.14|0|0.5|1|0.87|8|0|435 NbS00000014g0216.1 protein AED:0.15 eAED:0.15 QI:164|0.85|0.75|1|0.71|0.62|8|574|193 NbS00000014g0219.1 protein AED:0.30 eAED:0.36 QI:0|1|0.66|1|0.5|0.66|3|354|150 NbS00058449g0004.1 protein AED:0.26 eAED:0.26 QI:486|1|0.87|1|0.28|0.12|8|393|147; (*GB) gi|192910796|gb|ACF06506.1| (e_value=2e-29) RNA polymerase [Elaeis guineensis];; (*SWP) sp|Q923G2|RPAB3_MOUSE (e_value=5e-19) DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=2 SV=3;; (*TAIR) AT3G59600.1 (e_value=5e-26) | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146;; (*ITAG) Solyc01g081150.2.1 (e_value=4e-49) genomic_reference:SL2.40ch01 gene_region:72972619-72975564 transcript_region:SL2.40ch01:72972619..72975564- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 **** C3KGW8_ANOFI); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515,GO:0003899 NbS00032751g0026.1 protein AED:0.31 eAED:0.31 QI:169|0.66|0.75|1|0.33|0.5|4|411|313; (*GB) gi|6681351|dbj|BAA88668.1| (e_value=2e-174) ETAG-A3 [Solanum lycopersicum];; (*SWP) sp|Q38909|XTH28_ARATH (e_value=1e-141) Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1;; (*TAIR) AT1G14720.1 (e_value=1e-142) | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan endotransglucosylase/hydrolase 28 | chr1:5066806-5068466 REVERSE LENGTH=332;; (*ITAG) Solyc04g008210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1894160-1896580 transcript_region:SL2.40ch04:1894160..1896580+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 13 (AHRD V1 **** C0IRH2_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00032751g0025.1 protein AED:0.34 eAED:0.38 QI:0|0.5|0|1|0.5|0.33|3|0|291; (*GB) gi|225424442|ref|XP_002285121.1| (e_value=7e-102) PREDICTED: zinc finger protein 4-like [Vitis vinifera];; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=8e-47) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=6e-48) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc01g005130.2.1 (e_value=3e-121) genomic_reference:SL2.40ch01 gene_region:124758-125782 transcript_region:SL2.40ch01:124758..125782+ go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00032751g0029.1 protein AED:0.07 eAED:0.08 QI:0|0.25|0.4|1|0.25|0.2|5|0|448; (*GB) gi|225432118|ref|XP_002263668.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100-like [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=0.0) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G48100.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:17766921-17769625 FORWARD LENGTH=475;; (*ITAG) Solyc04g008230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1901661-1904764 transcript_region:SL2.40ch04:1901661..1904764- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- B6TYD6_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00032751g0015.1 protein AED:0.48 eAED:0.66 QI:0|1|0|1|1|1|2|0|61 NbS00032751g0027.1 protein AED:0.25 eAED:0.31 QI:7|0|0|1|0|0|4|0|163; (*GB) gi|351653939|ref|YP_004891665.1| (e_value=4e-41) ccsA gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12216|CCSA_TOBAC (e_value=2e-42) Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1;; (*ITAG) ATCG01040.1 (e_value=4e-28) | Symbols: YCF5 | Cytochrome C assembly protein | chrC:114461-115447 FORWARD LENGTH=328;; (*ITAG) Solyc11g021210.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13387102-13388041 transcript_region:SL2.40ch11:13387102..13388041+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis protein ccsA (AHRD V1 ***- CCSA_SOLLC); contains Interpro domain(s) IPR017562 Cytochrome c-type biogenesis protein CcsA "; GO:0016020 NbS00044260g0010.1 protein AED:0.77 eAED:0.91 QI:0|0|0|0.2|0.25|0.2|5|0|187 NbS00044260g0011.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|57014003|ref|YP_173474.1| (e_value=6e-21) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT1G35580.3 (e_value=4e-14) | Symbols: CINV1 | cytosolic invertase 1 | chr1:13123183-13124808 REVERSE LENGTH=460;; (*ITAG) Solyc00g021660.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00044260g0013.1 protein AED:0.35 eAED:0.57 QI:87|0|0|1|0|0|2|0|74; (*GB) gi|57014027|ref|YP_173498.1| (e_value=7e-17) hypothetical protein NitaMp161 [Nicotiana tabacum]; NbS00012090g0005.1 protein AED:0.18 eAED:0.18 QI:198|1|1|1|1|1|5|419|213; (*GB) gi|224133624|ref|XP_002327641.1| (e_value=4e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66090.1 (e_value=4e-72) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26425831-26426955 FORWARD LENGTH=210;; (*ITAG) Solyc02g083500.2.1 (e_value=7e-91) genomic_reference:SL2.40ch02 gene_region:41453013-41456494 transcript_region:SL2.40ch02:41453013..41456494+ go_terms:GO:0006950 functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 ***- Q9FKX3_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00012090g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|224994860|gb|ACN76552.1| (e_value=3e-29) putative plasma membrane intrinsic protein PIP family member 3 aquaporin [Cedrela odorata];; (*SWP) sp|P93004|PIP27_ARATH (e_value=8e-28) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=6e-29) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc02g083510.2.1 (e_value=1e-28) genomic_reference:SL2.40ch02 gene_region:41456730-41458872 transcript_region:SL2.40ch02:41456730..41458872- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q9FUC0_BRAOL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00034416g0005.1 protein AED:0.15 eAED:0.48 QI:0|0|0|1|0|0|5|0|377; (*GB) gi|312370165|gb|ADQ74440.1| (e_value=5e-71) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Physochlaina praealta];; (*SWP) sp|P04992|RBL_PETHY (e_value=3e-70) Ribulose bisphosphate carboxylase large chain OS=Petunia hybrida GN=rbcL PE=1 SV=1;; (*ITAG) ATCG00490.1 (e_value=2e-66) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=8e-71) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00028395g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|369; (*GB) gi|225441789|ref|XP_002283735.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Vitis vinifera];; (*SWP) sp|Q9FND7|PP410_ARATH (e_value=4e-121) Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1;; (*TAIR) AT5G40405.1 (e_value=3e-122) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16169315-16171153 FORWARD LENGTH=612;; (*ITAG) Solyc10g080220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60898450-60900728 transcript_region:SL2.40ch10:60898450..60900728+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028395g0003.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|4|0|197; (*ITAG) Solyc12g039050.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00029718g0002.1 protein AED:0.14 eAED:0.14 QI:132|1|1|1|0.5|0.66|3|220|229; (*GB) gi|7406997|gb|AAF61864.1|AF193771_1 (e_value=4e-144) DNA-binding protein 4 [Nicotiana tabacum];; (*SWP) sp|Q9LY00|WRK70_ARATH (e_value=1e-40) Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=2 SV=1;; (*TAIR) AT3G56400.1 (e_value=1e-41) | Symbols: WRKY70, ATWRKY70 | WRKY DNA-binding protein 70 | chr3:20909082-20910409 REVERSE LENGTH=294;; (*ITAG) Solyc09g015770.2.1 (e_value=3e-76) genomic_reference:SL2.40ch09 gene_region:10987958-10989890 transcript_region:SL2.40ch09:10987958..10989890- go_terms:GO:0003700 functional_description:"WRKY transcription factor 6 (AHRD V1 **** A7UGD3_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00025516g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|3|216|406; (*GB) gi|359480314|ref|XP_002270355.2| (e_value=0.0) PREDICTED: uncharacterized protein yqjG-like [Vitis vinifera];; (*SWP) sp|P42620|YQJG_ECOLI (e_value=2e-66) Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=1 SV=1;; (*TAIR) AT5G44000.1 (e_value=9e-174) | Symbols: | Glutathione S-transferase family protein | chr5:17702231-17703934 REVERSE LENGTH=399;; (*ITAG) Solyc06g083770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45391798-45394641 transcript_region:SL2.40ch06:45391798..45394641- go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** B6U900_MAIZE); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00025516g0001.1 protein AED:0.48 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|68 NbS00025516g0011.1 protein AED:0.14 eAED:0.17 QI:14|0.77|0.6|1|0.66|0.6|10|448|986; (*GB) gi|359480051|ref|XP_002270320.2| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase SUVR2-like [Vitis vinifera];; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=2e-139) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2;; (*TAIR) AT3G04380.1 (e_value=1e-140) | Symbols: SUVR4, SDG31 | SET-domain containing protein lysine methyltransferase family protein | chr3:1161602-1164539 FORWARD LENGTH=492;; (*ITAG) Solyc06g083760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45384714-45391381 transcript_region:SL2.40ch06:45384714..45391381+ go_terms:GO:0005634 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- Q0IEE2_AEDAE); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00036328g0004.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|255538182|ref|XP_002510156.1| (e_value=2e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g088640.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62358770-62360394 transcript_region:SL2.40ch12:62358770..62360394- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- C3QXY1_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00015772g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|323; (*GB) gi|224066893|ref|XP_002302266.1| (e_value=1e-166) predicted protein [Populus trichocarpa];; (*TAIR) AT1G22030.1 (e_value=1e-103) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7759337-7760415 REVERSE LENGTH=333;; (*ITAG) Solyc11g013330.1.1 (e_value=3e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6320973-6322514 transcript_region:SL2.40ch11:6320973..6322514+ functional_description:"F2E2.8 (AHRD V1 ***- Q9LM58_ARATH)"; NbS00030668g0001.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.25|1|1|4|0|251; (*ITAG) Solyc12g044970.1.1 (e_value=5e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001113g0017.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|0.5|2|0|99 NbS00001113g0012.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|6|0|233; (*GB) gi|356552460|ref|XP_003544585.1| (e_value=2e-15) PREDICTED: serine/threonine-protein kinase At5g01020-like [Glycine max];; (*SWP) sp|O49839|APK2A_ARATH (e_value=1e-13) Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=2 SV=1;; (*TAIR) AT1G14370.1 (e_value=1e-14) | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4915859-4917959 FORWARD LENGTH=426;; (*ITAG) Solyc01g106870.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:86350777-86353911 transcript_region:SL2.40ch01:86350777..86353911+ go_terms:GO:0006468 functional_description:"Receptor kinase 3 (AHRD V1 ***- Q948X3_BRACM); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00001113g0019.1 protein AED:0.15 eAED:0.15 QI:214|1|1|1|1|1|3|0|209; (*GB) gi|356521239|ref|XP_003529264.1| (e_value=4e-114) PREDICTED: putative glutamine amidotransferase YLR126C-like [Glycine max];; (*SWP) sp|Q12288|YL126_YEAST (e_value=2e-22) Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1;; (*TAIR) AT2G23970.1 (e_value=4e-78) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr2:10199698-10201081 FORWARD LENGTH=251;; (*ITAG) Solyc01g106060.2.1 (e_value=4e-147) genomic_reference:SL2.40ch01 gene_region:85803328-85806666 transcript_region:SL2.40ch01:85803328..85806666- go_terms:GO:0003824 functional_description:"Glutamine amidotransferase class-I (AHRD V1 **-- A2Q1P2_MEDTR); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0003824 NbS00001113g0016.1 protein AED:0.22 eAED:0.22 QI:270|1|1|1|1|0.94|19|121|526; (*GB) gi|225429271|ref|XP_002266390.1| (e_value=0.0) PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial [Vitis vinifera];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=0.0) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.1 (e_value=0.0) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977727-5981899 REVERSE LENGTH=607;; (*ITAG) Solyc01g106080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00001113g0014.1 protein AED:0.27 eAED:0.28 QI:286|0.83|0.84|1|0.94|0.94|19|398|782; (*GB) gi|359494701|ref|XP_002269774.2| (e_value=0.0) PREDICTED: dynamin-related protein 3A-like [Vitis vinifera];; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=0.0) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=0.0) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc01g106050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85782931-85793738 transcript_region:SL2.40ch01:85782931..85793738- go_terms:GO:0042803 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0042803 NbS00018330g0002.1 protein AED:0.21 eAED:0.22 QI:151|0.81|0.66|1|1|1|12|0|733; (*GB) gi|225452725|ref|XP_002277245.1| (e_value=0.0) PREDICTED: translation factor GUF1 homolog, mitochondrial [Vitis vinifera];; (*SWP) sp|B9RUN8|GUF1_RICCO (e_value=0.0) Translation factor GUF1 homolog, mitochondrial OS=Ricinus communis GN=RCOM_0855130 PE=3 SV=1;; (*TAIR) AT5G39900.1 (e_value=0.0) | Symbols: | Small GTP-binding protein | chr5:15976719-15978925 REVERSE LENGTH=663;; (*ITAG) Solyc03g058880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:23797823-23806755 transcript_region:SL2.40ch03:23797823..23806755+ go_terms:GO:0043022,GO:0003746 functional_description:"GTP-binding protein lepA (AHRD V1 **** C9LSH1_9FIRM); contains Interpro domain(s) IPR006297 GTP-binding protein LepA "; GO:0043022,GO:0003746 NbS00018330g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.33|0|1|0|0|4|0|234; (*GB) gi|730291|sp|P40972.1|PEL_TOBAC (e_value=9e-150) RecName: Full=Pectate lyase; Flags: Precursor;; (*SWP) sp|P40972|PLY_TOBAC (e_value=3e-151) Pectate lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=1e-77) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc03g058910.2.1 (e_value=1e-136) genomic_reference:SL2.40ch03 gene_region:23979789-23981523 transcript_region:SL2.40ch03:23979789..23981523+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** B6TPL1_MAIZE); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00018330g0009.1 protein AED:0.36 eAED:0.36 QI:20|1|1|1|0.5|0.6|5|585|142; (*GB) gi|13516451|dbj|BAB40310.1| (e_value=5e-98) ubiquitin-conjugating enzyme (E2) [Nicotiana tabacum];; (*SWP) sp|P42745|UBC2_ARATH (e_value=5e-98) Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1;; (*TAIR) AT2G02760.1 (e_value=4e-99) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc02g087750.2.1 (e_value=1e-100) genomic_reference:SL2.40ch02 gene_region:44634950-44640059 transcript_region:SL2.40ch02:44634950..44640059+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 ***- UBC2_WHEAT); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00018330g0010.1 protein AED:0.39 eAED:0.39 QI:0|0|0.25|0.25|0.66|0.75|4|360|204 NbS00038527g0003.1 protein AED:0.04 eAED:0.04 QI:235|1|1|1|1|1|2|209|253; (*GB) gi|224090927|ref|XP_002309119.1| (e_value=7e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09050.1 (e_value=1e-81) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr3:2764860-2765907 FORWARD LENGTH=258;; (*ITAG) Solyc10g085080.1.1 (e_value=2e-137) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63720057-63721795 transcript_region:SL2.40ch10:63720057..63721795- functional_description:"Unknown Protein (AHRD V1)"; NbS00002905g0009.1 protein AED:0.60 eAED:0.60 QI:174|0.6|0.33|0.83|0.6|0.5|6|0|88 NbS00002905g0008.1 protein AED:0.13 eAED:0.14 QI:0|0.36|0.33|0.91|0.72|0.66|12|27|1759; (*GB) gi|15418709|gb|AAG31013.1| (e_value=0.0) tospovirus resistance protein A [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=4e-98) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=6e-53) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc09g098130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00007526g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|124; (*GB) gi|297807339|ref|XP_002871553.1| (e_value=6e-24) hypothetical protein ARALYDRAFT_488135 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G24780.1 (e_value=6e-25) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr3:9049446-9051593 FORWARD LENGTH=715;; (*ITAG) Solyc01g009530.1.1 (e_value=7e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3784538-3785794 transcript_region:SL2.40ch01:3784538..3785794+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH)"; NbS00007526g0005.1 protein AED:0.00 eAED:0.00 QI:221|1|1|1|1|1|3|392|291; (*GB) gi|225468805|ref|XP_002263365.1| (e_value=2e-124) PREDICTED: GEM-like protein 5 [Vitis vinifera];; (*SWP) sp|Q9LYV6|GEML5_ARATH (e_value=3e-114) GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1;; (*TAIR) AT5G13200.1 (e_value=2e-115) | Symbols: | GRAM domain family protein | chr5:4207081-4208079 FORWARD LENGTH=272;; (*ITAG) Solyc08g078510.2.1 (e_value=1e-138) genomic_reference:SL2.40ch08 gene_region:59454948-59456978 transcript_region:SL2.40ch08:59454948..59456978- functional_description:"GRAM-containing/ABA-responsive protein (Fragment) (AHRD V1 *--- C6FBP1_PSEMZ); contains Interpro domain(s) IPR004182 GRAM "; NbS00039661g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|0.75|4|0|251; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-35) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc10g047840.1.1 (e_value=2e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015722g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.87|0.82|1|1|1|17|0|947; (*GB) gi|224105333|ref|XP_002313773.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9NW13|RBM28_HUMAN (e_value=6e-44) RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3;; (*TAIR) AT2G21440.1 (e_value=0.0) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:9173712-9179065 REVERSE LENGTH=1003;; (*ITAG) Solyc01g109990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88568486-88580603 transcript_region:SL2.40ch01:88568486..88580603+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 28 (AHRD V1 *--- B0X2T7_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00009161g0010.1 protein AED:0.11 eAED:0.12 QI:0|0.7|0.45|1|0.4|0.36|11|0|696; (*GB) gi|225447456|ref|XP_002266728.1| (e_value=0.0) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-176) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G04160.1 (e_value=0.0) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc12g011140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3975873-3981612 transcript_region:SL2.40ch12:3975873..3981612- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00009161g0005.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|100; (*GB) gi|16755592|gb|AAL28022.1| (e_value=6e-52) small GTPase Rab2 [Nicotiana tabacum];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=7e-51) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=5e-52) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc10g007700.2.1 (e_value=2e-54) genomic_reference:SL2.40ch10 gene_region:1953681-1958548 transcript_region:SL2.40ch10:1953681..1958548- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00013920g0003.1 protein AED:0.09 eAED:0.09 QI:72|0.88|0.9|1|0.55|0.5|10|148|788; (*GB) gi|359494848|ref|XP_002267221.2| (e_value=0.0) PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=7e-38) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G62340.1 (e_value=0.0) | Symbols: ALE1, ALE | PA-domain containing subtilase family protein | chr1:23051123-23055656 REVERSE LENGTH=832;; (*ITAG) Solyc03g078200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43719850-43725264 transcript_region:SL2.40ch03:43719850..43725264- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00013920g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|350538043|ref|NP_001234324.1| (e_value=7e-62) cysteine protease TDI-65 precursor [Solanum lycopersicum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=2e-43) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT5G43060.1 (e_value=3e-47) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc04g078540.2.1 (e_value=5e-66) genomic_reference:SL2.40ch04 gene_region:60836302-60840029 transcript_region:SL2.40ch04:60836302..60840029- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00034997g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.88|1|1|1|9|340|472; (*GB) gi|117622284|gb|ABK51386.1| (e_value=0.0) apyrase-like protein [Nicotiana tabacum];; (*SWP) sp|P52914|NTPA_PEA (e_value=7e-139) Nucleoside-triphosphatase OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G18280.1 (e_value=0.0) | Symbols: ATAPY2, APY2 | apyrase 2 | chr5:6050799-6054875 REVERSE LENGTH=578;; (*ITAG) Solyc12g096560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63765079-63769466 transcript_region:SL2.40ch12:63765079..63769466+ go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00038147g0003.1 protein AED:0.32 eAED:0.32 QI:309|1|0.62|1|1|1|8|0|497; (*GB) gi|255578868|ref|XP_002530288.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT5G60580.3 (e_value=5e-157) | Symbols: | RING/U-box superfamily protein | chr5:24354298-24356706 FORWARD LENGTH=487;; (*ITAG) Solyc06g016770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:9846556-9851018 transcript_region:SL2.40ch06:9846556..9851018+ go_terms:GO:0005515 functional_description:"Zinc finger family protein (AHRD V1 **-- D7MTV5_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00010147g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|132; (*ITAG) Solyc04g056740.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00010147g0001.1 protein AED:0.43 eAED:0.51 QI:611|0|0.33|0.66|1|1|3|0|73 NbS00060862g0002.1 protein AED:0.00 eAED:0.00 QI:30|1|1|1|0|0|2|163|35 NbS00060862g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0.66|1|0.5|0.66|3|281|85; (*GB) gi|384498138|gb|EIE88629.1| (e_value=4e-15) hypothetical protein RO3G_13340 [Rhizopus oryzae RA 99-880];; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=1e-12) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.2 (e_value=1e-13) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=142;; (*ITAG) Solyc12g009120.1.1 (e_value=6e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00031711g0004.1 protein AED:0.18 eAED:0.19 QI:0|0.93|0.81|0.93|0.86|0.93|16|0|717; (*GB) gi|129563703|gb|ABO31100.1| (e_value=0.0) ovule receptor-like kinase 28 [Solanum chacoense];; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.1 (e_value=0.0) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=719;; (*ITAG) Solyc03g123740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64528644-64537461 transcript_region:SL2.40ch03:64528644..64537461- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00000561g0019.1 protein AED:0.11 eAED:0.23 QI:0|0.2|0|1|0.2|0.16|6|0|392; (*GB) gi|19911171|dbj|BAB86912.1| (e_value=7e-92) putative cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=4e-60) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=4e-59) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=4e-168) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0020.1 protein AED:0.14 eAED:0.24 QI:0|0.14|0.12|1|0.14|0|8|0|380; (*GB) gi|19911171|dbj|BAB86912.1| (e_value=2e-91) putative cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=1e-69) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=3e-68) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=3e-151) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0024.1 protein AED:0.26 eAED:0.26 QI:0|0.2|0.16|1|0.4|0.33|6|0|466; (*GB) gi|242053687|ref|XP_002455989.1| (e_value=1e-82) hypothetical protein SORBIDRAFT_03g028560 [Sorghum bicolor];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=1e-59) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14630.1 (e_value=7e-83) | Symbols: CYP72A9 | cytochrome P450, family 72, subfamily A, polypeptide 9 | chr3:4917498-4919409 FORWARD LENGTH=508;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-133) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0025.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0.33|0.25|4|0|295; (*GB) gi|4376203|gb|AAB05376.3| (e_value=4e-98) putative cytochrome P-450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=3e-76) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14610.1 (e_value=7e-79) | Symbols: CYP72A7 | cytochrome P450, family 72, subfamily A, polypeptide 7 | chr3:4912565-4914503 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-152) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0021.1 protein AED:0.23 eAED:0.34 QI:0|0|0|1|0.2|0.16|6|0|324; (*GB) gi|19911171|dbj|BAB86912.1| (e_value=5e-70) putative cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=9e-59) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14680.1 (e_value=4e-56) | Symbols: CYP72A14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | chr3:4934478-4936462 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-121) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0026.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|4376203|gb|AAB05376.3| (e_value=7e-42) putative cytochrome P-450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9SHG5|C72C1_ARATH (e_value=2e-28) Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2;; (*TAIR) AT3G14690.1 (e_value=1e-30) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-74) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0022.1 protein AED:0.36 eAED:0.37 QI:0|1|0|1|0|0.5|2|0|152; (*GB) gi|4376203|gb|AAB05376.3| (e_value=5e-42) putative cytochrome P-450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q9SHG5|C72C1_ARATH (e_value=1e-29) Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2;; (*TAIR) AT1G17060.1 (e_value=8e-31) | Symbols: CYP72C1, SOB7 | cytochrome p450 72c1 | chr1:5832282-5835255 REVERSE LENGTH=476;; (*ITAG) Solyc07g043460.2.1 (e_value=1e-74) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0023.1 protein AED:0.39 eAED:0.48 QI:0|0|0|1|0.33|0.25|4|0|219; (*GB) gi|19911171|dbj|BAB86912.1| (e_value=6e-43) putative cytochrome P450 [Solanum tuberosum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=1e-27) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14680.1 (e_value=2e-33) | Symbols: CYP72A14 | cytochrome P450, family 72, subfamily A, polypeptide 14 | chr3:4934478-4936462 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-92) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00000561g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|4376203|gb|AAB05376.3| (e_value=1e-59) putative cytochrome P-450 [Nicotiana plumbaginifolia];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=3e-38) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14610.1 (e_value=3e-45) | Symbols: CYP72A7 | cytochrome P450, family 72, subfamily A, polypeptide 7 | chr3:4912565-4914503 FORWARD LENGTH=512;; (*ITAG) Solyc10g007880.2.1 (e_value=4e-41) genomic_reference:SL2.40ch10 gene_region:2080596-2083797 transcript_region:SL2.40ch10:2080596..2083797+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006578g0111.1 protein AED:0.10 eAED:0.20 QI:0|0.75|0.6|0.8|1|1|5|0|247 NbS00006578g0115.1 protein AED:0.30 eAED:0.30 QI:55|0.72|0.83|1|0.36|0.58|12|693|319 NbS00006578g0116.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|122 NbS00006578g0106.1 protein AED:0.42 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|134 NbS00027905g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.42|0.12|0.87|0.42|0.25|8|0|871; (*GB) gi|255567489|ref|XP_002524724.1| (e_value=0.0) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|O64782|SD129_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD1-29 OS=Arabidopsis thaliana GN=SD129 PE=1 SV=1;; (*TAIR) AT1G61380.1 (e_value=0.0) | Symbols: SD1-29 | S-domain-1 29 | chr1:22646277-22649401 REVERSE LENGTH=805;; (*ITAG) Solyc03g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1281367-1289556 transcript_region:SL2.40ch03:1281367..1289556+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00027905g0001.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|1|1|3|0|369; (*GB) gi|157932074|gb|ABW05088.1| (e_value=8e-81) ovate-like protein [Nicotiana tabacum];; (*TAIR) AT2G18500.1 (e_value=2e-28) | Symbols: ATOFP7, OFP7 | ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315;; (*ITAG) Solyc03g034100.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:10070572-10072340 transcript_region:SL2.40ch03:10070572..10072340+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00027905g0009.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|525|173; (*GB) gi|156070790|gb|ABU45202.1| (e_value=1e-70) unknown [Solanum bulbocastanum];; (*TAIR) AT4G36660.1 (e_value=7e-70) | Symbols: | Protein of unknown function (DUF1195) | chr4:17285953-17287281 REVERSE LENGTH=179;; (*ITAG) Solyc03g034090.2.1 (e_value=6e-96) genomic_reference:SL2.40ch03 gene_region:10063965-10069238 transcript_region:SL2.40ch03:10063965..10069238+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00060756g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0.5|0.66|3|0|163; (*GB) gi|255576895|ref|XP_002529333.1| (e_value=2e-63) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G32580.1 (e_value=2e-60) | Symbols: | Protein of unknown function (DUF1068) | chr2:13827849-13829135 FORWARD LENGTH=183;; (*ITAG) Solyc07g049730.2.1 (e_value=6e-92) genomic_reference:SL2.40ch07 gene_region:57398397-57402361 transcript_region:SL2.40ch07:57398397..57402361- functional_description:"TO62-3 (Fragment) (AHRD V1 *-*- Q3LVL2_TAROF); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00060756g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|320; (*GB) gi|15982240|emb|CAC91565.1| (e_value=0.0) hydroperoxide lyase [Nicotiana attenuata];; (*SWP) sp|Q96242|CP74A_ARATH (e_value=8e-75) Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3;; (*TAIR) AT4G15440.1 (e_value=9e-127) | Symbols: HPL1, CYP74B2 | hydroperoxide lyase 1 | chr4:8835869-8838462 FORWARD LENGTH=384;; (*ITAG) Solyc07g049690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57369720-57376439 transcript_region:SL2.40ch07:57369720..57376439+ go_terms:GO:0020037 functional_description:"Cytochrome P450"; GO:0020037 NbS00002790g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|193527444|gb|ACF19787.1| (e_value=2e-149) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=7e-11) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=5e-12) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=4e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00002790g0007.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|89; (*ITAG) Solyc01g107180.2.1 (e_value=4e-25) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00002790g0004.1 protein AED:0.42 eAED:0.61 QI:0|-1|0|1|-1|1|1|0|97 NbS00002790g0010.1 protein AED:0.23 eAED:0.31 QI:0|0|0|1|0|0|4|0|490; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=6e-47) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=5e-48) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g066380.1.1 (e_value=2e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00002790g0018.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|3|0|232; (*GB) gi|147819220|emb|CAN66911.1| (e_value=4e-46) hypothetical protein VITISV_035422 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=1e-33) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=8e-35) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=4e-76) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00002790g0011.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0|2|0|167; (*GB) gi|356536111|ref|XP_003536583.1| (e_value=2e-42) PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max];; (*SWP) sp|O80970|NPY2_ARATH (e_value=3e-31) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=2e-32) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=4e-51) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00032957g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|383; (*GB) gi|359482119|ref|XP_002276941.2| (e_value=2e-143) PREDICTED: uncharacterized protein LOC100267590 [Vitis vinifera];; (*TAIR) AT1G55370.2 (e_value=1e-86) | Symbols: NDF5 | NDH-dependent cyclic electron flow 5 | chr1:20674852-20676071 FORWARD LENGTH=354;; (*ITAG) Solyc03g062710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29342362-29343967 transcript_region:SL2.40ch03:29342362..29343967- go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein expressed (AHRD V1 **-- Q10CW2_ORYSJ); contains Interpro domain(s) IPR011013 Glycoside hydrolase-type carbohydrate-binding "; GO:0005975 NbS00032957g0006.1 protein AED:0.15 eAED:0.16 QI:406|0|0.33|0.66|0.5|0.66|3|0|604; (*GB) gi|255568936|ref|XP_002525438.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54385.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:20301289-20303048 REVERSE LENGTH=560;; (*ITAG) Solyc03g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29339799-29342210 transcript_region:SL2.40ch03:29339799..29342210+ go_terms:GO:0000398,GO:0005488 functional_description:"Binding protein (AHRD V1 *-*- D7L203_ARALY); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398,GO:0005488 NbS00007065g0014.1 protein AED:0.03 eAED:0.03 QI:219|1|1|1|1|1|7|523|461; (*GB) gi|224117360|ref|XP_002317553.1| (e_value=4e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=1e-62) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT3G20640.1 (e_value=1e-63) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454;; (*ITAG) Solyc07g063830.2.1 (e_value=6e-173) genomic_reference:SL2.40ch07 gene_region:63384804-63388585 transcript_region:SL2.40ch07:63384804..63388585- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00007065g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.66|1|1|1|9|0|796; (*GB) gi|224122858|ref|XP_002330381.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63374423-63378124 transcript_region:SL2.40ch07:63374423..63378124- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00007065g0015.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.22|1|0.37|0.44|9|0|634; (*GB) gi|359493715|ref|XP_002280938.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=9e-172) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=7e-173) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63340297-63343608 transcript_region:SL2.40ch07:63340297..63343608- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00017296g0004.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|0|0.5|2|305|313; (*GB) gi|225423499|ref|XP_002274432.1| (e_value=1e-172) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=5e-139) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=4e-140) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc12g096510.1.1 (e_value=3e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017296g0003.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|239; (*GB) gi|147798405|emb|CAN70142.1| (e_value=1e-110) hypothetical protein VITISV_032085 [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=2e-87) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=1e-88) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc01g104090.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:84319648-84321791 transcript_region:SL2.40ch01:84319648..84321791- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9F5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017296g0021.1 protein AED:0.01 eAED:0.01 QI:56|1|1|1|1|1|3|265|125; (*GB) gi|255566943|ref|XP_002524454.1| (e_value=4e-33) Early nodulin, putative [Ricinus communis];; (*SWP) sp|Q02921|NO93_SOYBN (e_value=4e-30) Early nodulin-93 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G25940.1 (e_value=2e-14) | Symbols: | early nodulin-related | chr5:9054252-9055151 REVERSE LENGTH=115;; (*ITAG) Solyc12g006680.1.1 (e_value=2e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:1144017-1145010 transcript_region:SL2.40ch12:1144017..1145010- functional_description:"Early nodulin 93 protein (AHRD V1 ***- A3FGC9_9ROSI); contains Interpro domain(s) IPR005050 Early nodulin 93 ENOD93 protein "; NbS00017296g0022.1 protein AED:0.03 eAED:0.03 QI:60|1|0.66|1|0.5|0.33|3|0|489; (*GB) gi|225445430|ref|XP_002285044.1| (e_value=0.0) PREDICTED: protein kinase PINOID 2-like [Vitis vinifera];; (*SWP) sp|Q64FQ2|PID2_ARATH (e_value=1e-180) Protein kinase PINOID 2 OS=Arabidopsis thaliana GN=PID2 PE=1 SV=1;; (*TAIR) AT2G26700.1 (e_value=0.0) | Symbols: PID2 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr2:11368613-11370951 FORWARD LENGTH=525;; (*ITAG) Solyc12g006690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1152815-1155108 transcript_region:SL2.40ch12:1152815..1155108- go_terms:GO:0004676 functional_description:"Kinase family protein (AHRD V1 **** D7LER6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004676 NbS00017296g0019.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|1|1|3|39|127; (*GB) gi|388521825|gb|AFK48974.1| (e_value=1e-37) unknown [Lotus japonicus];; (*TAIR) AT2G26695.1 (e_value=2e-32) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g006600.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1083786-1084309 transcript_region:SL2.40ch12:1083786..1084309+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00017296g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0|2|113|359; (*GB) gi|225445424|ref|XP_002285038.1| (e_value=3e-99) PREDICTED: uncharacterized protein LOC100247481 [Vitis vinifera];; (*TAIR) AT3G25910.1 (e_value=6e-70) | Symbols: | Protein of unknown function (DUF1644) | chr3:9489836-9490954 FORWARD LENGTH=372;; (*ITAG) Solyc12g006700.1.1 (e_value=4e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1165391-1166395 transcript_region:SL2.40ch12:1165391..1166395- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00017296g0020.1 protein AED:0.37 eAED:0.37 QI:0|0.25|0.4|0.8|0.25|0|5|209|212; (*GB) gi|2760836|gb|AAB95304.1| (e_value=5e-35) putative second messenger-dependent protein kinase [Arabidopsis thaliana];; (*SWP) sp|Q5R580|ZRAB2_PONAB (e_value=4e-11) Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1;; (*TAIR) AT2G26695.1 (e_value=9e-41) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr2:11365275-11365789 FORWARD LENGTH=138;; (*ITAG) Solyc12g011060.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3931559-3932709 transcript_region:SL2.40ch12:3931559..3932709+ go_terms:GO:0005622 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 ***- D7L4W6_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005622 NbS00027122g0009.1 protein AED:0.09 eAED:0.10 QI:150|0.57|0.62|0.87|0.42|0.37|8|498|303; (*GB) gi|359490078|ref|XP_002264821.2| (e_value=2e-120) PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera];; (*TAIR) AT5G51220.1 (e_value=2e-118) | Symbols: | ubiquinol-cytochrome C chaperone family protein | chr5:20821405-20823125 REVERSE LENGTH=281;; (*ITAG) Solyc06g034100.2.1 (e_value=2e-148) genomic_reference:SL2.40ch06 gene_region:20347654-20362103 transcript_region:SL2.40ch06:20347654..20362103+ functional_description:"Ubiquinol-cytochrome C chaperone family protein (AHRD V1 ***- D7MQY5_ARALY); contains Interpro domain(s) IPR007129 Ubiquinol-cytochrome C chaperone "; NbS00027122g0014.1 protein AED:0.18 eAED:0.18 QI:307|1|1|1|0.75|0.6|5|75|250; (*GB) gi|224053623|ref|XP_002297902.1| (e_value=4e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|B0CAZ0|DNAJ_ACAM1 (e_value=1e-15) Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G59610.1 (e_value=3e-63) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:24013165-24014954 FORWARD LENGTH=268;; (*ITAG) Solyc09g015360.2.1 (e_value=4e-86) genomic_reference:SL2.40ch09 gene_region:8605917-8609888 transcript_region:SL2.40ch09:8605917..8609888- go_terms:GO:0006457,GO:0031072 functional_description:"Co-chaperone protein DnaJ (AHRD V1 *-*- A7I1Z6_CAMHC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00027122g0001.1 protein AED:0.30 eAED:0.30 QI:162|1|0.9|1|0.88|0.8|10|525|389; (*GB) gi|224112821|ref|XP_002332699.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P53118|ROG1_YEAST (e_value=8e-12) Putative lipase ROG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ROG1 PE=1 SV=1;; (*TAIR) AT5G51180.2 (e_value=6e-170) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20797360-20799929 FORWARD LENGTH=357;; (*ITAG) Solyc05g052020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61505374-61513495 transcript_region:SL2.40ch05:61505374..61513495+ functional_description:"Serine esterase family protein (AHRD V1 **-- B6SYS8_MAIZE); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00050541g0011.1 protein AED:0.00 eAED:0.00 QI:346|1|1|1|0.5|0.66|3|776|277; (*GB) gi|224143813|ref|XP_002325083.1| (e_value=2e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9BU70|NAP1_HUMAN (e_value=8e-41) Nef-associated protein 1 OS=Homo sapiens GN=C9orf156 PE=1 SV=2;; (*TAIR) AT4G28020.1 (e_value=4e-115) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0066 (InterPro:IPR001378); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13933389-13935249 REVERSE LENGTH=351;; (*ITAG) Solyc11g007750.1.1 (e_value=1e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1975333-1977163 transcript_region:SL2.40ch11:1975333..1977163- functional_description:"Potassium-tellurite ethidium and proflavin transporter (AHRD V1 *--- C5S1A7_9PAST); contains Interpro domain(s) IPR001378 Uncharacterised protein family UPF0066 "; NbS00050541g0013.1 protein AED:0.15 eAED:0.15 QI:1134|0.90|0.75|1|0.72|0.66|12|247|343; (*GB) gi|350539745|ref|NP_001234519.1| (e_value=0.0) 3-phosphoinositide-dependent protein kinase-1 [Solanum lycopersicum];; (*SWP) sp|Q4V3C8|PDPK2_ARATH (e_value=1e-162) 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana GN=PDPK2 PE=1 SV=1;; (*TAIR) AT3G10540.1 (e_value=9e-164) | Symbols: | 3-phosphoinositide-dependent protein kinase | chr3:3289916-3292429 FORWARD LENGTH=486;; (*ITAG) Solyc11g007760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1978088-1983128 transcript_region:SL2.40ch11:1978088..1983128- go_terms:GO:0006468 functional_description:"Protein kinase 3 (AHRD V1 ***- D3BKW3_POLPA); contains Interpro domain(s) IPR015746 Protein Kinase-1, 3-phosphoinositide dependent "; GO:0006468 NbS00050541g0009.1 protein AED:0.20 eAED:0.20 QI:182|1|1|1|0.71|0.75|8|335|282; (*GB) gi|51971543|dbj|BAD44436.1| (e_value=7e-100) putative ribosome recycling factor [Arabidopsis thaliana];; (*SWP) sp|A9GGK7|RRF_SORC5 (e_value=2e-33) Ribosome-recycling factor OS=Sorangium cellulosum (strain So ce56) GN=frr PE=3 SV=1;; (*TAIR) AT3G01800.1 (e_value=3e-102) | Symbols: | Ribosome recycling factor | chr3:286020-287543 FORWARD LENGTH=267;; (*ITAG) Solyc11g007740.1.1 (e_value=8e-144) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1970357-1974751 transcript_region:SL2.40ch11:1970357..1974751+ go_terms:GO:0006412,GO:0005737 functional_description:"Ribosome-recycling factor (AHRD V1 ***- Q1K328_DESAC); contains Interpro domain(s) IPR015998 Ribosome recycling factor, bacterial-like "; GO:0006412,GO:0005737 NbS00041576g0003.1 protein AED:0.05 eAED:0.05 QI:257|0.83|0.71|1|1|1|7|244|242; (*GB) gi|255570278|ref|XP_002526099.1| (e_value=2e-52) Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) [Ricinus communis];; (*SWP) sp|Q9LLC1|BCCP2_ARATH (e_value=3e-45) Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=1 SV=1;; (*TAIR) AT5G15530.1 (e_value=2e-46) | Symbols: BCCP2, CAC1-B | biotin carboxyl carrier protein 2 | chr5:5038955-5040437 FORWARD LENGTH=255;; (*ITAG) Solyc06g069530.2.1 (e_value=3e-94) genomic_reference:SL2.40ch06 gene_region:39686045-39688714 transcript_region:SL2.40ch06:39686045..39688714- go_terms:GO:0003989,GO:0004642 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** Q7NZD6_CHRVO); contains Interpro domain(s) IPR001249 Acetyl-CoA biotin carboxyl carrier "; GO:0003989,GO:0004642 NbS00011387g0005.1 protein AED:0.76 eAED:0.87 QI:0|0|0|0.33|1|1|3|0|110 NbS00011387g0114.1 protein AED:0.02 eAED:0.02 QI:408|1|1|1|0.66|0.71|7|0|446 NbS00011387g0113.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|112 NbS00026508g0001.1 protein AED:0.46 eAED:0.55 QI:0|0|0|0.75|1|1|4|0|234; (*GB) gi|15237323|ref|NP_200110.1| (e_value=2e-47) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT5G52980.1 (e_value=5e-50) | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482329-21483642 REVERSE LENGTH=222;; (*ITAG) Solyc08g076770.2.1 (e_value=4e-61) genomic_reference:SL2.40ch08 gene_region:57864667-57866130 transcript_region:SL2.40ch08:57864667..57866130- functional_description:"Os02g0225300 protein (Fragment) (AHRD V1 *-*- Q0E2N4_ORYSJ)"; NbS00025528g0003.1 protein AED:0.40 eAED:0.48 QI:0|0|0|1|0|0|3|0|152; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-31) hypothetical protein [Nicotiana tabacum]; NbS00025528g0002.1 protein AED:0.40 eAED:0.47 QI:0|0|0|1|0|0|2|0|88 NbS00025528g0101.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|172 NbS00007930g0007.1 protein AED:0.04 eAED:0.05 QI:0|0.4|0.16|1|0.6|0.66|6|333|728; (*GB) gi|225443788|ref|XP_002266263.1| (e_value=8e-106) PREDICTED: uncharacterized protein LOC100253264 [Vitis vinifera];; (*TAIR) AT1G29240.1 (e_value=2e-22) | Symbols: | Protein of unknown function (DUF688) | chr1:10217023-10218924 REVERSE LENGTH=577;; (*ITAG) Solyc02g076680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36402192-36404946 transcript_region:SL2.40ch02:36402192..36404946- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00007930g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|359483753|ref|XP_002266308.2| (e_value=3e-28) PREDICTED: oryzain alpha chain-like [Vitis vinifera];; (*ITAG) Solyc02g076710.2.1 (e_value=2e-33) genomic_reference:SL2.40ch02 gene_region:36418834-36421805 transcript_region:SL2.40ch02:36418834..36421805- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00007930g0008.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|2|0|141 NbS00006957g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|200; (*GB) gi|255581728|ref|XP_002531666.1| (e_value=1e-64) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G43680.2 (e_value=6e-38) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. | chr5:17544074-17545354 FORWARD LENGTH=232;; (*ITAG) Solyc04g080950.2.1 (e_value=3e-109) genomic_reference:SL2.40ch04 gene_region:62601559-62605364 transcript_region:SL2.40ch04:62601559..62605364- functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG95_ARATH)"; NbS00042805g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-59) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=4e-41) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=6e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00042805g0009.1 protein AED:0.20 eAED:0.29 QI:0|0|0|0.75|0|0.5|4|0|296; (*GB) gi|147854984|emb|CAN82399.1| (e_value=4e-75) hypothetical protein VITISV_032215 [Vitis vinifera];; (*TAIR) AT1G29500.1 (e_value=5e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=8e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00042805g0008.1 protein AED:0.29 eAED:0.35 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-45) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=3e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00027581g0016.1 protein AED:0.04 eAED:0.07 QI:229|0|0.25|1|0.33|0.25|4|0|1407; (*GB) gi|145308227|gb|ABP57378.1| (e_value=0.0) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT5G39500.1 (e_value=0.0) | Symbols: GNL1, ERMO1 | GNOM-like 1 | chr5:15815274-15819910 FORWARD LENGTH=1443;; (*ITAG) Solyc02g088290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45008764-45014036 transcript_region:SL2.40ch02:45008764..45014036- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 *--- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00027581g0014.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|1|2|0|250; (*GB) gi|77403673|dbj|BAE46415.1| (e_value=1e-121) short chain dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q08632|SDR1_PICAB (e_value=3e-76) Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1;; (*TAIR) AT4G13180.1 (e_value=9e-92) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:7657373-7658164 REVERSE LENGTH=263;; (*ITAG) Solyc06g071060.1.1 (e_value=6e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40049808-40050596 transcript_region:SL2.40ch06:40049808..40050596+ go_terms:GO:0043621 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **-- D7L204_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621 NbS00027581g0017.1 protein AED:0.16 eAED:0.16 QI:701|1|1|1|1|1|5|4|178; (*GB) gi|225452895|ref|XP_002283961.1| (e_value=6e-24) PREDICTED: uncharacterized protein LOC100242230 [Vitis vinifera];; (*ITAG) Solyc02g088280.2.1 (e_value=5e-86) genomic_reference:SL2.40ch02 gene_region:45005916-45008073 transcript_region:SL2.40ch02:45005916..45008073+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058719g0004.1 protein AED:0.05 eAED:0.05 QI:42|0.66|0.75|1|1|1|4|290|529; (*GB) gi|224138080|ref|XP_002326513.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7KRY7|LAP4_DROME (e_value=5e-36) Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1;; (*TAIR) AT4G35470.1 (e_value=7e-143) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc08g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1548922-1552302 transcript_region:SL2.40ch08:1548922..1552302+ go_terms:GO:0008022,GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0008022,GO:0019903 NbS00041415g0007.1 protein AED:0.36 eAED:0.36 QI:469|0.33|0.5|0.5|0.66|1|4|0|182; (*GB) gi|225452380|ref|XP_002275670.1| (e_value=5e-94) PREDICTED: uncharacterized protein LOC100259507 [Vitis vinifera];; (*TAIR) AT5G14550.2 (e_value=7e-71) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4691633-4693732 REVERSE LENGTH=346;; (*ITAG) Solyc02g086550.2.1 (e_value=3e-114) genomic_reference:SL2.40ch02 gene_region:43791778-43797970 transcript_region:SL2.40ch02:43791778..43797970- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00030872g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|317; (*GB) gi|350538985|ref|NP_001234624.1| (e_value=0.0) 2-oxoglutarate-dependent dioxygenase [Solanum lycopersicum];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=9e-128) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=7e-129) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc12g006380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:888715-890946 transcript_region:SL2.40ch12:888715..890946- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00000762g0005.1 protein AED:0.13 eAED:0.13 QI:382|1|1|1|0|0.25|4|544|159; (*GB) gi|225449489|ref|XP_002283485.1| (e_value=2e-62) PREDICTED: elicitor-responsive protein 1 [Vitis vinifera];; (*SWP) sp|Q0JHU5|ERG1_ORYSJ (e_value=5e-50) Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1;; (*TAIR) AT3G55470.2 (e_value=8e-51) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:20564356-20566092 FORWARD LENGTH=155;; (*ITAG) Solyc04g011540.2.1 (e_value=7e-90) genomic_reference:SL2.40ch04 gene_region:3971870-3974807 transcript_region:SL2.40ch04:3971870..3974807+ functional_description:"Elicitor-responsive protein 1 (AHRD V1 **-- B6T411_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00000762g0004.1 protein AED:0.16 eAED:0.16 QI:395|0.66|1|1|0.33|0.5|4|291|197; (*ITAG) Solyc01g073870.2.1 (e_value=6e-24) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00006967g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|0.5|1|1|2|59|193; (*GB) gi|255561048|ref|XP_002521536.1| (e_value=6e-26) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT3G50930.1 (e_value=6e-22) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc02g062550.2.1 (e_value=4e-34) genomic_reference:SL2.40ch02 gene_region:28853140-28855308 transcript_region:SL2.40ch02:28853140..28855308- go_terms:GO:0042623,GO:0005515 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_HELPY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00006967g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|191; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-56) hypothetical protein [Nicotiana tabacum]; NbS00006967g0104.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|163 NbS00006967g0108.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|1|1|1|3|0|287 NbS00006967g0101.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|279 NbS00039595g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.25|1|1|4|0|558; (*GB) gi|224061883|ref|XP_002300646.1| (e_value=1e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=9e-71) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=7e-90) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00026631g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|258; (*GB) gi|242049138|ref|XP_002462313.1| (e_value=8e-123) hypothetical protein SORBIDRAFT_02g023660 [Sorghum bicolor];; (*SWP) sp|Q09850|ENG2_SCHPO (e_value=1e-23) Putative endo-1,3(4)-beta-glucanase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng2 PE=2 SV=1;; (*TAIR) AT5G15870.1 (e_value=3e-110) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc03g046200.1.1 (e_value=8e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15883134-15885335 transcript_region:SL2.40ch03:15883134..15885335- go_terms:GO:0016798 functional_description:"Endo-1 3-beta-glucanase (AHRD V1 ***- C5FLR9_NANOT); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00026631g0004.1 protein AED:0.33 eAED:0.40 QI:0|0|0|1|0|0|2|0|220; (*GB) gi|90657563|gb|ABD96863.1| (e_value=6e-56) hypothetical protein [Cleome spinosa];; (*TAIR) AT5G15870.1 (e_value=2e-50) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc03g046200.1.1 (e_value=8e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:15883134-15885335 transcript_region:SL2.40ch03:15883134..15885335- go_terms:GO:0016798 functional_description:"Endo-1 3-beta-glucanase (AHRD V1 ***- C5FLR9_NANOT); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00033673g0005.1 protein AED:0.05 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|152; (*ITAG) Solyc04g050030.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00033673g0006.1 protein AED:0.25 eAED:0.25 QI:66|0.87|0.77|1|0.62|0.55|9|178|206; (*GB) gi|302142499|emb|CBI19702.3| (e_value=3e-62) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66550.1 (e_value=2e-53) | Symbols: | Maf-like protein | chr5:26559752-26561162 REVERSE LENGTH=207;; (*ITAG) Solyc02g085290.2.1 (e_value=1e-87) genomic_reference:SL2.40ch02 gene_region:42809743-42814096 transcript_region:SL2.40ch02:42809743..42814096- go_terms:GO:0042802 functional_description:"Maf-like protein expressed (AHRD V1 ***- Q2R2T0_ORYSJ); contains Interpro domain(s) IPR003697 Maf-like protein "; GO:0042802 NbS00004717g0103.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|128 NbS00004717g0109.1 protein AED:0.18 eAED:0.18 QI:0|0|0.25|0.25|1|1|4|730|118 NbS00004717g0120.1 protein AED:0.23 eAED:0.28 QI:0|0|0.25|0.75|0.33|0.5|4|244|150 NbS00004717g0123.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|0.5|0.33|3|0|343 NbS00004717g0124.1 protein AED:0.28 eAED:0.29 QI:190|0.2|0.16|0.83|0|0|6|0|380 NbS00004717g0122.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|4|0|491 NbS00004717g0121.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|143 NbS00004717g0119.1 protein AED:0.15 eAED:0.18 QI:1|0|0|1|0|0|3|0|131 NbC25355161g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=6e-61) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*SWP) sp|P52409|E13B_WHEAT (e_value=5e-37) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT3G46570.1 (e_value=1e-44) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:17145797-17146867 REVERSE LENGTH=356;; (*ITAG) Solyc05g054440.2.1 (e_value=5e-69) genomic_reference:SL2.40ch05 gene_region:63513848-63517175 transcript_region:SL2.40ch05:63513848..63517175+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6TY63_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00054712g0008.1 protein AED:0.17 eAED:0.19 QI:0|0.5|0|1|0.5|0.33|3|0|184; (*GB) gi|225449232|ref|XP_002279987.1| (e_value=3e-115) PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Vitis vinifera];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=3e-111) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=2e-112) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=3e-117) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00054712g0007.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|79; (*GB) gi|296086106|emb|CBI31547.3| (e_value=4e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5XF09|PT311_ARATH (e_value=3e-34) Probable sugar phosphate/phosphate translocator At3g11320 OS=Arabidopsis thaliana GN=At3g11320 PE=2 SV=1;; (*TAIR) AT3G11320.1 (e_value=2e-35) | Symbols: | Nucleotide-sugar transporter family protein | chr3:3547017-3548539 REVERSE LENGTH=308;; (*ITAG) Solyc05g052790.2.1 (e_value=2e-36) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00027195g0013.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0.5|0.66|3|0|551; (*GB) gi|225442092|ref|XP_002272769.1| (e_value=0.0) PREDICTED: subtilisin-like protease isoform 1 [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-145) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc06g062950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00027195g0012.1 protein AED:0.40 eAED:0.42 QI:66|0|0|0.66|0.5|1|3|0|136; (*GB) gi|384498138|gb|EIE88629.1| (e_value=3e-16) hypothetical protein RO3G_13340 [Rhizopus oryzae RA 99-880];; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=2e-13) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.2 (e_value=4e-15) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=142;; (*ITAG) Solyc12g009120.1.1 (e_value=6e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00027195g0006.1 protein AED:0.43 eAED:0.50 QI:0|-1|0|1|-1|0|1|0|104; (*GB) gi|225442092|ref|XP_002272769.1| (e_value=3e-26) PREDICTED: subtilisin-like protease isoform 1 [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-15) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=3e-20) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc06g062950.1.1 (e_value=7e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00029705g0010.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0.5|0.33|3|108|134 NbS00029705g0011.1 protein AED:0.14 eAED:0.19 QI:308|1|0.66|1|1|1|3|0|388; (*GB) gi|255583865|ref|XP_002532683.1| (e_value=7e-136) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9ZNU2|NAC18_ARATH (e_value=7e-88) NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1;; (*TAIR) AT3G15510.1 (e_value=2e-111) | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain containing protein 2 | chr3:5243696-5245037 FORWARD LENGTH=364;; (*ITAG) Solyc07g063420.2.1 (e_value=6e-172) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00029705g0009.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|7|590|374; (*GB) gi|225461355|ref|XP_002284644.1| (e_value=1e-165) PREDICTED: uncharacterized protein LOC100253839 [Vitis vinifera];; (*SWP) sp|Q6CIY7|SYM1_KLULA (e_value=2e-17) Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1;; (*TAIR) AT1G52870.2 (e_value=1e-160) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr1:19685856-19687678 FORWARD LENGTH=366;; (*ITAG) Solyc07g063430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63130568-63134669 transcript_region:SL2.40ch07:63130568..63134669- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 *--- B0WWR6_CULQU); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00037686g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.22|0.88|0.37|0.33|9|0|344; (*GB) gi|225436687|ref|XP_002263127.1| (e_value=2e-104) PREDICTED: fatty acyl-CoA reductase 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=2e-80) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=1e-81) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067180.1.1 (e_value=5e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50014211-50020961 transcript_region:SL2.40ch11:50014211..50020961- go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00004615g0004.1 protein AED:0.07 eAED:0.07 QI:412|1|0.6|1|0.75|0.6|5|0|704; (*GB) gi|359474391|ref|XP_003631452.1| (e_value=1e-59) PREDICTED: uncharacterized protein LOC100852661 [Vitis vinifera];; (*TAIR) AT1G62530.2 (e_value=5e-20) | Symbols: | Plant protein of unknown function (DUF863) | chr1:23146332-23147386 REVERSE LENGTH=312;; (*ITAG) Solyc08g079030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59844908-59849011 transcript_region:SL2.40ch08:59844908..59849011- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00009618g0001.1 protein AED:0.17 eAED:0.17 QI:241|0.33|0.28|0.85|0.83|0.71|7|0|1056; (*GB) gi|157152684|gb|ABV24845.1| (e_value=0.0) RNA-dependent RNA polymerase [Nicotiana glutinosa];; (*SWP) sp|Q9LQV2|RDR1_ARATH (e_value=0.0) RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1;; (*TAIR) AT1G14790.1 (e_value=0.0) | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107;; (*ITAG) Solyc05g007510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2062303-2071146 transcript_region:SL2.40ch05:2062303..2071146- go_terms:GO:0003968 functional_description:"RNA-dependent RNA polymerase (AHRD V1 **** C1I213_NICGU); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003968 NbS00040218g0009.1 protein AED:0.02 eAED:0.02 QI:200|1|0.5|1|1|1|2|0|603; (*GB) gi|225435528|ref|XP_002283014.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265521 [Vitis vinifera];; (*TAIR) AT5G12900.1 (e_value=2e-163) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562;; (*ITAG) Solyc01g006690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1267165-1270752 transcript_region:SL2.40ch01:1267165..1270752- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00040218g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|255639485|gb|ACU20037.1| (e_value=3e-66) unknown [Glycine max];; (*SWP) sp|Q8CH62|ORAV1_MOUSE (e_value=2e-19) Oral cancer-overexpressed protein 1 homolog OS=Mus musculus GN=Oraov1 PE=2 SV=1;; (*TAIR) AT2G20830.2 (e_value=4e-34) | Symbols: | transferases;folic acid binding | chr2:8968370-8970479 REVERSE LENGTH=431;; (*ITAG) Solyc07g064840.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64060642-64061079 transcript_region:SL2.40ch07:64060642..64061079+ functional_description:"Oral cancer overexpressed protein 1 (AHRD V1 ***- B6SJ47_MAIZE); contains Interpro domain(s) IPR013179 Protein of unknown function DUF1715, eukaryotic "; NbS00040218g0008.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0.66|0.5|4|0|535; (*GB) gi|38045385|gb|AAR08677.1| (e_value=2e-88) EIL1 [Petunia x hybrida];; (*SWP) sp|O23116|EIL3_ARATH (e_value=9e-57) ETHYLENE INSENSITIVE 3-like 3 protein OS=Arabidopsis thaliana GN=EIL3 PE=1 SV=1;; (*TAIR) AT1G73730.1 (e_value=7e-58) | Symbols: EIL3, SLIM1, ATSLIM, AtEIL3 | ETHYLENE-INSENSITIVE3-like 3 | chr1:27730434-27732363 REVERSE LENGTH=567;; (*ITAG) Solyc01g014480.2.1 (e_value=1e-150) genomic_reference:SL2.40ch01 gene_region:13959370-13962121 transcript_region:SL2.40ch01:13959370..13962121- go_terms:GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 *-** D5L144_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0003700 NbS00020923g0003.1 protein AED:0.22 eAED:0.22 QI:206|0.9|0.90|1|0.7|0.72|11|314|496; (*GB) gi|359482241|ref|XP_002266914.2| (e_value=0.0) PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|P47082|AVT1_YEAST (e_value=3e-32) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT2G41190.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr2:17167561-17170145 REVERSE LENGTH=536;; (*ITAG) Solyc03g078150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:43677589-43684882 transcript_region:SL2.40ch03:43677589..43684882+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LGK0_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00006397g0014.1 protein AED:0.29 eAED:0.29 QI:272|0.87|0.88|1|0.75|0.66|9|271|332; (*GB) gi|225442563|ref|XP_002279072.1| (e_value=0.0) PREDICTED: peroxisome biogenesis protein 2 [Vitis vinifera];; (*SWP) sp|Q9CA86|PEX2_ARATH (e_value=2e-167) Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1;; (*TAIR) AT1G79810.1 (e_value=2e-168) | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein | chr1:30019944-30022156 FORWARD LENGTH=333;; (*ITAG) Solyc06g066570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38205217-38211891 transcript_region:SL2.40ch06:38205217..38211891+ go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 2 (AHRD V1 *-*- A8NXV9_COPC7); contains Interpro domain(s) IPR006845 Pex, N-terminal "; GO:0005515 NbS00006397g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|106 NbS00006397g0012.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|137; (*ITAG) Solyc06g011460.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00006397g0107.1 protein AED:0.06 eAED:0.08 QI:0|0.6|0.66|1|0.6|0.66|6|0|309 NbS00055175g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|224062677|ref|XP_002300872.1| (e_value=2e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=3e-35) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT5G50890.1 (e_value=1e-156) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc10g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1960324-1964209 transcript_region:SL2.40ch10:1960324..1964209+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00055175g0006.1 protein AED:0.17 eAED:0.18 QI:66|1|0.66|1|1|1|3|0|444; (*GB) gi|225446819|ref|XP_002279329.1| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 5 [Vitis vinifera];; (*SWP) sp|Q8C0L8|COG5_MOUSE (e_value=3e-56) Conserved oligomeric Golgi complex subunit 5 OS=Mus musculus GN=Cog5 PE=2 SV=3;; (*TAIR) AT1G67930.1 (e_value=0.0) | Symbols: | Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832;; (*ITAG) Solyc10g007720.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1967084-1974413 transcript_region:SL2.40ch10:1967084..1974413- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 5 (AHRD V1 ***- COG5_HUMAN); contains Interpro domain(s) IPR019465 Conserved oligomeric Golgi complex, subunit 5 "; GO:0005515 NbS00050197g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|0.5|2|0|150; (*GB) gi|10798750|dbj|BAB16427.1| (e_value=6e-81) NtEIG-E80 [Nicotiana tabacum];; (*TAIR) AT3G54040.1 (e_value=2e-57) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g086710.1.1 (e_value=7e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64793100-64793774 transcript_region:SL2.40ch10:64793100..64793774- functional_description:"PAR-1b protein (AHRD V1 ***- Q43588_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00038595g0001.1 protein AED:0.21 eAED:0.21 QI:238|0.87|0.88|1|0.87|0.88|9|379|354; (*GB) gi|359496625|ref|XP_002263670.2| (e_value=0.0) PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera];; (*SWP) sp|P19446|MDHG_CITLA (e_value=0.0) Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT2G22780.1 (e_value=0.0) | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase 1 | chr2:9689995-9691923 REVERSE LENGTH=354;; (*ITAG) Solyc02g063490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30142872-30148026 transcript_region:SL2.40ch02:30142872..30148026- go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** B9S7S1_RICCO); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00039438g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|20149044|gb|AAM12777.1| (e_value=1e-37) putative auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-29) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18020.1 (e_value=2e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5966305-5966580 REVERSE LENGTH=91;; (*ITAG) Solyc11g011680.1.1 (e_value=3e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4703254-4703532 transcript_region:SL2.40ch11:4703254..4703532+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00039438g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|20149052|gb|AAM12781.1| (e_value=1e-66) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=3e-40) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=3e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00039438g0010.1 protein AED:0.44 eAED:0.44 QI:0|0.33|0|0.75|0.66|0.75|4|0|191; (*GB) gi|359473443|ref|XP_002264500.2| (e_value=4e-47) PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=4e-26) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=3e-27) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=9e-79) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00039438g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|153; (*GB) gi|20149052|gb|AAM12781.1| (e_value=2e-60) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29500.1 (e_value=6e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00039438g0007.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|226; (*GB) gi|147846493|emb|CAN79513.1| (e_value=3e-79) hypothetical protein VITISV_014159 [Vitis vinifera];; (*TAIR) AT1G29500.1 (e_value=3e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=3e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00014659g0006.1 protein AED:0.20 eAED:0.20 QI:234|1|1|1|0.83|0.71|7|220|170; (*GB) gi|225442841|ref|XP_002285351.1| (e_value=1e-91) PREDICTED: monothiol glutaredoxin-S15, mitochondrial isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LBK6|GRS15_ARATH (e_value=1e-78) Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2;; (*TAIR) AT3G15660.2 (e_value=1e-79) | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169;; (*ITAG) Solyc06g067960.2.1 (e_value=5e-118) genomic_reference:SL2.40ch06 gene_region:38512806-38516407 transcript_region:SL2.40ch06:38512806..38516407- go_terms:GO:0046872 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7L4W4_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0046872 NbS00014659g0007.1 protein AED:0.13 eAED:0.14 QI:276|1|1|1|1|1|7|260|128; (*GB) gi|225442835|ref|XP_002285335.1| (e_value=4e-66) PREDICTED: acyl-protein thioesterase 2 [Vitis vinifera];; (*TAIR) AT3G15650.2 (e_value=2e-55) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:5306006-5307764 FORWARD LENGTH=274;; (*ITAG) Solyc06g067950.2.1 (e_value=3e-78) genomic_reference:SL2.40ch06 gene_region:38509716-38512582 transcript_region:SL2.40ch06:38509716..38512582+ go_terms:GO:0008474,GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0008474,GO:0004622 NbS00017032g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|1|2|572|177; (*ITAG) Solyc02g094450.2.1 (e_value=7e-30) genomic_reference:SL2.40ch02 gene_region:49548774-49551040 transcript_region:SL2.40ch02:49548774..49551040- functional_description:"Unknown Protein (AHRD V1)"; NbS00048409g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.75|1|1|4|0|137; (*GB) gi|151301852|gb|ABR92334.1| (e_value=3e-32) putative dienelactone hydrolase family protein [Salvia miltiorrhiza];; (*TAIR) AT3G23600.1 (e_value=1e-22) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239;; (*ITAG) Solyc01g080230.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:71951482-71953722 transcript_region:SL2.40ch01:71951482..71953722+ go_terms:GO:0016787 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0016787 NbS00021269g0004.1 protein AED:0.19 eAED:0.20 QI:60|0|0.5|1|0|0|2|0|109; (*ITAG) Solyc08g067650.1.1 (e_value=7e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:53861969-53862439 transcript_region:SL2.40ch08:53861969..53862439- functional_description:"Unknown Protein (AHRD V1)"; NbS00031620g0002.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|85 NbS00012362g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|0|0.5|2|0|199; (*GB) gi|255544119|ref|XP_002513122.1| (e_value=5e-88) glucose regulated repressor protein, putative [Ricinus communis];; (*SWP) sp|Q9QZH7|FXL20_RAT (e_value=5e-26) F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1;; (*TAIR) AT5G23340.1 (e_value=2e-89) | Symbols: | RNI-like superfamily protein | chr5:7856314-7857983 FORWARD LENGTH=405;; (*ITAG) Solyc04g008980.2.1 (e_value=2e-108) genomic_reference:SL2.40ch04 gene_region:2567073-2569411 transcript_region:SL2.40ch04:2567073..2569411- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein (AHRD V1 ***- C0S347_PARBP); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00004529g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.2|0.6|0.75|1|5|0|608; (*GB) gi|359480578|ref|XP_002284242.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g67385-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q66GP0|Y5738_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2;; (*TAIR) AT5G67385.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26884754-26887083 FORWARD LENGTH=604;; (*ITAG) Solyc02g092560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48190481-48194067 transcript_region:SL2.40ch02:48190481..48194067- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00007102g0019.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|383|177; (*GB) gi|359492419|ref|XP_002284335.2| (e_value=7e-63) PREDICTED: uncharacterized protein LOC100245365 [Vitis vinifera];; (*TAIR) AT1G77800.2 (e_value=2e-44) | Symbols: | PHD finger family protein | chr1:29253800-29260190 FORWARD LENGTH=1374;; (*ITAG) Solyc11g013530.1.1 (e_value=6e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6608300-6627616 transcript_region:SL2.40ch11:6608300..6627616+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7KUM9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00007102g0021.1 protein AED:0.08 eAED:0.09 QI:0|0.94|0.83|1|0.70|0.72|18|0|1354; (*GB) gi|255545554|ref|XP_002513837.1| (e_value=0.0) phd finger protein, putative [Ricinus communis];; (*SWP) sp|Q803A0|JADE1_DANRE (e_value=3e-31) Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1;; (*TAIR) AT1G77800.1 (e_value=2e-113) | Symbols: | PHD finger family protein | chr1:29253800-29260190 FORWARD LENGTH=1375;; (*ITAG) Solyc11g013530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6608300-6627616 transcript_region:SL2.40ch11:6608300..6627616+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7KUM9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00007102g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|76; (*GB) gi|255545552|ref|XP_002513836.1| (e_value=3e-45) Transmembrane protein 50A, putative [Ricinus communis];; (*TAIR) AT1G36980.1 (e_value=3e-45) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:14025084-14026727 FORWARD LENGTH=135;; (*ITAG) Solyc11g013550.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6653847-6662041 transcript_region:SL2.40ch11:6653847..6662041+ functional_description:"Transmembrane protein 50A (AHRD V1 ***- B6SZ92_MAIZE); contains Interpro domain(s) IPR007919 Uncharacterised protein family UPF0220 "; NbS00007102g0005.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|418; (*GB) gi|225441858|ref|XP_002278530.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Vitis vinifera];; (*SWP) sp|Q9SAJ5|PP133_ARATH (e_value=7e-148) Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1;; (*TAIR) AT1G79540.1 (e_value=5e-149) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29920334-29922676 REVERSE LENGTH=780;; (*ITAG) Solyc02g083780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41627837-41631881 transcript_region:SL2.40ch02:41627837..41631881- go_terms:GO:0016773 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016773 NbS00007102g0004.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|1|1|2|0|281; (*GB) gi|225441858|ref|XP_002278530.1| (e_value=7e-107) PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Vitis vinifera];; (*SWP) sp|Q9SAJ5|PP133_ARATH (e_value=6e-81) Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1;; (*TAIR) AT1G79540.1 (e_value=4e-82) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29920334-29922676 REVERSE LENGTH=780;; (*ITAG) Solyc02g083780.1.1 (e_value=4e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41627837-41631881 transcript_region:SL2.40ch02:41627837..41631881- go_terms:GO:0016773 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016773 NbS00007102g0009.1 protein AED:0.39 eAED:0.40 QI:0|0|0.25|0.5|1|1|4|1550|139 NbS00007102g0007.1 protein AED:0.09 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|225426615|ref|XP_002280751.1| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100266795 isoform 1 [Vitis vinifera];; (*TAIR) AT5G41960.1 (e_value=2e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16789760-16790868 FORWARD LENGTH=217;; (*ITAG) Solyc08g083030.2.1 (e_value=1e-33) genomic_reference:SL2.40ch08 gene_region:62787635-62790415 transcript_region:SL2.40ch08:62787635..62790415- functional_description:"Unknown Protein (AHRD V1)"; NbS00020425g0009.1 protein AED:0.26 eAED:0.26 QI:333|0.75|0.66|1|1|1|9|0|504; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=0.0) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=0.0) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.1 (e_value=0.0) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc12g042740.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00020425g0002.1 protein AED:0.06 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|225442885|ref|XP_002263563.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100244079 [Vitis vinifera];; (*TAIR) AT1G80450.1 (e_value=7e-19) | Symbols: | VQ motif-containing protein | chr1:30244155-30244688 REVERSE LENGTH=177;; (*ITAG) Solyc03g117500.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60698445-60698951 transcript_region:SL2.40ch03:60698445..60698951+ functional_description:"VQ motif-containing protein (AHRD V1 ***- D7KX58_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00024912g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|340; (*GB) gi|147811594|emb|CAN68183.1| (e_value=4e-133) hypothetical protein VITISV_028562 [Vitis vinifera];; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=1e-92) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G44970.1 (e_value=6e-84) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc11g007210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1628496-1629588 transcript_region:SL2.40ch11:1628496..1629588- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B4FSK9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00059593g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.8|1|1|1|5|207|277; (*GB) gi|296083733|emb|CBI23722.3| (e_value=2e-78) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04530.1 (e_value=5e-39) | Symbols: TPR4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1234456-1235895 REVERSE LENGTH=310;; (*ITAG) Solyc09g090930.2.1 (e_value=2e-148) genomic_reference:SL2.40ch09 gene_region:65677871-65682183 transcript_region:SL2.40ch09:65677871..65682183+ go_terms:GO:0005488,GO:0005622 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00059593g0005.1 protein AED:0.21 eAED:0.21 QI:386|1|1|1|0.87|0.88|9|535|469; (*GB) gi|296083732|emb|CBI23721.3| (e_value=1e-157) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=2e-19) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT5G43960.1 (e_value=1e-93) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450;; (*ITAG) Solyc09g090940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65682661-65689282 transcript_region:SL2.40ch09:65682661..65689282- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00016721g0007.1 protein AED:0.01 eAED:0.01 QI:448|1|1|1|1|1|6|384|376; (*GB) gi|225430605|ref|XP_002266463.1| (e_value=7e-92) PREDICTED: transcription repressor KAN1 [Vitis vinifera];; (*SWP) sp|Q93WJ9|KAN1_ARATH (e_value=2e-57) Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1;; (*TAIR) AT5G16560.1 (e_value=2e-58) | Symbols: KAN, KAN1 | Homeodomain-like superfamily protein | chr5:5407365-5411092 REVERSE LENGTH=403;; (*ITAG) Solyc05g051060.2.1 (e_value=2e-113) genomic_reference:SL2.40ch05 gene_region:60389537-60395010 transcript_region:SL2.40ch05:60389537..60395010- go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 *--* Q84NK2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00016721g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0.75|0.6|5|0|474; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=2e-77) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=2e-29) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=1e-23) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc05g043420.1.1 (e_value=6e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:55463046-55467606 transcript_region:SL2.40ch05:55463046..55467606- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00025354g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|210; (*ITAG) Solyc04g080640.1.1 (e_value=3e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:62343699-62344502 transcript_region:SL2.40ch04:62343699..62344502+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00001930g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.84|0.94|1|1|19|0|621; (*GB) gi|159906513|gb|ABI98682.2| (e_value=0.0) chloroplast NADP-malic enzyme precursor [Nicotiana tabacum];; (*SWP) sp|P37222|MAOC_SOLLC (e_value=0.0) NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G79750.1 (e_value=0.0) | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646;; (*ITAG) Solyc12g044600.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:45079934-45087825 transcript_region:SL2.40ch12:45079934..45087825+ go_terms:GO:0004473 functional_description:"NADP-dependent malic enzyme, chloroplastic (AHRD V1 ***- MAOC_FLAPR); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00035384g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|321; (*GB) gi|255565099|ref|XP_002523542.1| (e_value=4e-169) Endosomal P24A protein precursor, putative [Ricinus communis];; (*SWP) sp|Q66HG5|TM9S2_RAT (e_value=2e-78) Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1;; (*TAIR) AT5G35160.1 (e_value=4e-169) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=630;; (*ITAG) Solyc06g065830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37652162-37654282 transcript_region:SL2.40ch06:37652162..37654282- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 ***- B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00018697g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|0.5|0.33|3|0|227; (*GB) gi|225455706|ref|XP_002266571.1| (e_value=4e-116) PREDICTED: isoaspartyl peptidase/L-asparaginase 1 [Vitis vinifera];; (*SWP) sp|P30362|ASPG_LUPAR (e_value=2e-113) Isoaspartyl peptidase/L-asparaginase (Fragment) OS=Lupinus arboreus PE=2 SV=1;; (*TAIR) AT5G08100.2 (e_value=1e-112) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:2593242-2594138 REVERSE LENGTH=235;; (*ITAG) Solyc06g069400.2.1 (e_value=8e-133) genomic_reference:SL2.40ch06 gene_region:39550930-39555145 transcript_region:SL2.40ch06:39550930..39555145+ go_terms:GO:0003948 functional_description:"N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 *-** ASPG_ELIMR); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbS00018697g0006.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|0|0.5|2|0|71; (*GB) gi|357121217|ref|XP_003562317.1| (e_value=5e-31) PREDICTED: isoaspartyl peptidase/L-asparaginase 1-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|P30364|ASPG_LUPAN (e_value=2e-29) Isoaspartyl peptidase/L-asparaginase OS=Lupinus angustifolius PE=2 SV=1;; (*TAIR) AT5G08100.1 (e_value=4e-29) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr5:2593242-2594586 REVERSE LENGTH=315;; (*ITAG) Solyc06g069400.2.1 (e_value=4e-41) genomic_reference:SL2.40ch06 gene_region:39550930-39555145 transcript_region:SL2.40ch06:39550930..39555145+ go_terms:GO:0003948 functional_description:"N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase (AHRD V1 *-** ASPG_ELIMR); contains Interpro domain(s) IPR000246 Peptidase T2, asparaginase 2 "; GO:0003948 NbS00028643g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.33|0|4|0|408; (*GB) gi|225450460|ref|XP_002276666.1| (e_value=4e-41) PREDICTED: uncharacterized protein LOC100254519 [Vitis vinifera];; (*SWP) sp|Q9M069|E137_ARATH (e_value=1e-23) Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2;; (*TAIR) AT1G09460.1 (e_value=1e-34) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:3053901-3055090 FORWARD LENGTH=330;; (*ITAG) Solyc01g101120.2.1 (e_value=3e-100) genomic_reference:SL2.40ch01 gene_region:82731870-82734442 transcript_region:SL2.40ch01:82731870..82734442+ functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B4FGE4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00028643g0009.1 protein AED:0.38 eAED:0.38 QI:0|1|0.4|1|1|1|5|0|348; (*GB) gi|359487694|ref|XP_002276639.2| (e_value=3e-155) PREDICTED: uncharacterized protein LOC100259639 [Vitis vinifera];; (*TAIR) AT5G26770.1 (e_value=9e-125) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9407981-9409735 REVERSE LENGTH=335;; (*ITAG) Solyc01g101130.2.1 (e_value=5e-172) genomic_reference:SL2.40ch01 gene_region:82735376-82738361 transcript_region:SL2.40ch01:82735376..82738361- functional_description:"Plant IF-like protein (AHRD V1 ***- B6TAT2_MAIZE)"; NbS00028643g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|117; (*GB) gi|359806412|ref|NP_001240985.1| (e_value=9e-60) ras-related protein RABA5b-like [Glycine max];; (*SWP) sp|Q9SRS5|RAA5B_ARATH (e_value=4e-60) Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1;; (*TAIR) AT3G07410.1 (e_value=3e-61) | Symbols: AtRABA5b, RABA5b | RAB GTPase homolog A5B | chr3:2372485-2373482 REVERSE LENGTH=217;; (*ITAG) Solyc09g056340.2.1 (e_value=3e-68) genomic_reference:SL2.40ch09 gene_region:44378803-44381132 transcript_region:SL2.40ch09:44378803..44381132+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00040520g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|195; (*GB) gi|116332|sp|P29060.1|CHIA_TOBAC (e_value=2e-127) RecName: Full=Acidic endochitinase; Flags: Precursor;; (*SWP) sp|P29060|CHIA_TOBAC (e_value=6e-129) Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT5G24090.1 (e_value=2e-84) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc05g050130.2.1 (e_value=3e-122) genomic_reference:SL2.40ch05 gene_region:59255269-59257111 transcript_region:SL2.40ch05:59255269..59257111- go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00040520g0005.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|0|0|2|0|65; (*GB) gi|116332|sp|P29060.1|CHIA_TOBAC (e_value=2e-15) RecName: Full=Acidic endochitinase; Flags: Precursor;; (*SWP) sp|P29060|CHIA_TOBAC (e_value=7e-17) Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1;; (*ITAG) Solyc05g050130.2.1 (e_value=1e-14) genomic_reference:SL2.40ch05 gene_region:59255269-59257111 transcript_region:SL2.40ch05:59255269..59257111- go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 **-- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00027490g0007.1 protein AED:0.36 eAED:0.36 QI:0|1|0.83|1|0.8|0.66|6|212|395; (*GB) gi|296081787|emb|CBI20792.3| (e_value=3e-65) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FUD3|BZIP9_ARATH (e_value=1e-43) Basic leucine zipper 9 OS=Arabidopsis thaliana GN=BZIP9 PE=1 SV=1;; (*TAIR) AT5G24800.1 (e_value=9e-45) | Symbols: ATBZIP9, BZO2H2, BZIP9 | basic leucine zipper 9 | chr5:8515259-8516541 FORWARD LENGTH=277;; (*ITAG) Solyc08g006110.2.1 (e_value=2e-125) genomic_reference:SL2.40ch08 gene_region:849296-854274 transcript_region:SL2.40ch08:849296..854274- go_terms:GO:0046982,GO:0003677 functional_description:"Opaque 2 (Fragment) (AHRD V1 *--- Q84Y96_ZEAMM); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0003677 NbS00021738g0002.1 protein AED:0.16 eAED:0.17 QI:135|0.5|0.66|1|0|0.66|3|0|490; (*GB) gi|225449442|ref|XP_002283087.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate acyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9CAY3|GPAT5_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1;; (*TAIR) AT3G11430.1 (e_value=0.0) | Symbols: ATGPAT5, GPAT5 | glycerol-3-phosphate acyltransferase 5 | chr3:3595911-3597678 FORWARD LENGTH=502;; (*ITAG) Solyc04g011600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4029691-4031884 transcript_region:SL2.40ch04:4029691..4031884+ go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T011_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00016680g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|0|2|0|159; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc02g030330.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00016680g0002.1 protein AED:0.29 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|128; (*ITAG) Solyc11g006240.1.1 (e_value=1e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:992150-992518 transcript_region:SL2.40ch11:992150..992518- functional_description:"Unknown Protein (AHRD V1)"; NbS00003467g0022.1 protein AED:0.10 eAED:0.10 QI:119|0.66|0.5|1|0.33|0.75|4|0|769; (*GB) gi|365222938|gb|AEW69821.1| (e_value=0.0) Hop-interacting protein THI138 [Solanum lycopersicum];; (*SWP) sp|Q65JY4|MURE_BACLD (e_value=1e-101) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=murE PE=3 SV=1;; (*TAIR) AT1G63680.1 (e_value=0.0) | Symbols: ATMURE, PDE316, MURE | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases | chr1:23614461-23617247 FORWARD LENGTH=772;; (*ITAG) Solyc08g081170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61408719-61413145 transcript_region:SL2.40ch08:61408719..61413145+ go_terms:GO:0005515,GO:0008764 functional_description:"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase (AHRD V1 *-** D7UXP7_LISGR); contains Interpro domain(s) IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase "; GO:0005515,GO:0008764 NbS00003467g0014.1 protein AED:0.17 eAED:0.17 QI:19|1|1|1|1|1|2|25|65; (*GB) gi|297739883|emb|CBI30065.3| (e_value=9e-19) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10160.1 (e_value=5e-14) | Symbols: ATDFC, DFC, FPGS2 | DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625; NbS00003467g0013.1 protein AED:0.31 eAED:0.32 QI:683|0.83|0.76|1|0.41|0.53|13|0|163; (*GB) gi|224137770|ref|XP_002322647.1| (e_value=2e-48) folylpolyglutamate synthase [Populus trichocarpa];; (*SWP) sp|F4J2K2|FPGS2_ARATH (e_value=1e-41) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1;; (*TAIR) AT3G10160.1 (e_value=1e-42) | Symbols: ATDFC, DFC, FPGS2 | DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625;; (*ITAG) Solyc04g016550.2.1 (e_value=3e-42) genomic_reference:SL2.40ch04 gene_region:7371010-7380851 transcript_region:SL2.40ch04:7371010..7380851- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9IHV7_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00003467g0023.1 protein AED:0.36 eAED:0.36 QI:206|0.83|0.84|1|0.75|0.76|13|305|524; (*GB) gi|255537495|ref|XP_002509814.1| (e_value=0.0) Minor histocompatibility antigen H13, putative [Ricinus communis];; (*SWP) sp|Q5F383|SPP2B_CHICK (e_value=4e-43) Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1;; (*TAIR) AT1G63690.1 (e_value=0.0) | Symbols: ATSPPL2, SPPL2 | SIGNAL PEPTIDE PEPTIDASE-LIKE 2 | chr1:23618490-23622082 FORWARD LENGTH=540;; (*ITAG) Solyc08g081180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61415165-61423265 transcript_region:SL2.40ch08:61415165..61423265+ go_terms:GO:0008233 functional_description:"Signal peptide peptidase (AHRD V1 **** Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0008233 NbS00003467g0027.1 protein AED:0.40 eAED:0.40 QI:0|0.33|0|0.75|0.33|0.75|4|0|151; (*ITAG) Solyc04g016530.2.1 (e_value=4e-40) genomic_reference:SL2.40ch04 gene_region:7356030-7363750 transcript_region:SL2.40ch04:7356030..7363750- go_terms:GO:0003676,GO:0006281,GO:0005622 functional_description:"Exodeoxyribonuclease III (AHRD V1 *-*- B8DDX5_LISMH); contains Interpro domain(s) IPR000097 AP endonuclease, family 1 "; GO:0003676,GO:0006281,GO:0005622 NbS00003467g0026.1 protein AED:0.39 eAED:0.50 QI:0|0.5|0.33|1|0.5|0.33|3|0|102; (*GB) gi|357125452|ref|XP_003564408.1| (e_value=2e-37) PREDICTED: apurinic endonuclease-redox protein-like isoform 1 [Brachypodium distachyon];; (*SWP) sp|P45951|ARP_ARATH (e_value=2e-32) Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2;; (*TAIR) AT2G41460.2 (e_value=2e-34) | Symbols: ARP | apurinic endonuclease-redox protein | chr2:17285731-17288041 FORWARD LENGTH=403;; (*ITAG) Solyc04g016530.2.1 (e_value=3e-42) genomic_reference:SL2.40ch04 gene_region:7356030-7363750 transcript_region:SL2.40ch04:7356030..7363750- go_terms:GO:0003676,GO:0006281,GO:0005622 functional_description:"Exodeoxyribonuclease III (AHRD V1 *-*- B8DDX5_LISMH); contains Interpro domain(s) IPR000097 AP endonuclease, family 1 "; GO:0003676,GO:0006281,GO:0005622 NbS00003467g0028.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|339959595|gb|AEK25530.1| (e_value=6e-18) UDP-GlcNac-dolichyl-phosphate N-acetylglucosaminephosphotransferase [Solanum tuberosum];; (*ITAG) Solyc04g016520.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:7338776-7344302 transcript_region:SL2.40ch04:7338776..7344302- go_terms:GO:0003975 functional_description:"UDP-N-acetylglucosamine dolichyl phosphate N-acetylglucosamine-1-phosphate transferase (AHRD V1 **** Q8TGX0_ASPNG); contains Interpro domain(s) IPR018481 Glycosyl transferase, family 4, conserved region "; GO:0003975 NbS00030907g0010.1 protein AED:0.29 eAED:0.31 QI:116|0.8|0.66|1|0.8|1|6|0|116; (*GB) gi|388511273|gb|AFK43698.1| (e_value=1e-53) unknown [Medicago truncatula];; (*SWP) sp|Q8VZ37|AP3S_ARATH (e_value=1e-53) AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1;; (*TAIR) AT3G50860.1 (e_value=7e-55) | Symbols: | Clathrin adaptor complex small chain family protein | chr3:18902346-18903959 FORWARD LENGTH=166;; (*ITAG) Solyc02g085240.2.1 (e_value=9e-74) genomic_reference:SL2.40ch02 gene_region:42786010-42788435 transcript_region:SL2.40ch02:42786010..42788435+ go_terms:GO:0008565,GO:0030276 functional_description:"AP-3 complex subunit sigma-2 (AHRD V1 ***- B4FA26_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0008565,GO:0030276 NbS00030907g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.86|0.75|1|0.93|0.87|16|415|563; (*GB) gi|225430760|ref|XP_002266788.1| (e_value=0.0) PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q68FT3|PYRD2_RAT (e_value=2e-175) Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1;; (*TAIR) AT5G49555.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:20107411-20110602 REVERSE LENGTH=556;; (*ITAG) Solyc02g085250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42789344-42799166 transcript_region:SL2.40ch02:42789344..42799166- go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 **-- A6CBH0_9PLAN); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00060732g0002.1 protein AED:0.53 eAED:0.76 QI:1|0|0|1|0|0|2|86|49 NbS00000643g0012.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0.5|0.33|3|0|162; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-26) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g015800.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11015336-11017255 transcript_region:SL2.40ch09:11015336..11017255- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00000643g0011.1 protein AED:0.27 eAED:0.28 QI:1|0|0|1|0|0|3|0|241; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-82) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00012262g0005.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|324; (*GB) gi|350539617|ref|NP_001233966.1| (e_value=5e-146) TCP transcription factor 13 [Solanum lycopersicum];; (*SWP) sp|Q9C518|TCP8_ARATH (e_value=2e-53) Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1;; (*TAIR) AT1G58100.1 (e_value=1e-54) | Symbols: | TCP family transcription factor | chr1:21512680-21513885 REVERSE LENGTH=401;; (*ITAG) Solyc06g065190.1.1 (e_value=1e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37037216-37038193 transcript_region:SL2.40ch06:37037216..37038193- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00012262g0007.1 protein AED:0.21 eAED:0.21 QI:1257|0.6|0.5|1|0.8|0.66|6|847|682; (*GB) gi|288901116|gb|ADC68260.1| (e_value=0.0) neutral/alkaline invertase 2 [Hevea brasiliensis];; (*TAIR) AT4G09510.1 (e_value=0.0) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021312-6023310 REVERSE LENGTH=558;; (*ITAG) Solyc06g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37049546-37053685 transcript_region:SL2.40ch06:37049546..37053685- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00003146g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|197; (*GB) gi|225453362|ref|XP_002272263.1| (e_value=9e-35) PREDICTED: uclacyanin-2 [Vitis vinifera];; (*SWP) sp|Q41001|BCP_PEA (e_value=1e-27) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G60280.1 (e_value=7e-33) | Symbols: UCC3 | uclacyanin 3 | chr3:22279867-22280633 REVERSE LENGTH=222;; (*ITAG) Solyc01g090120.2.1 (e_value=6e-86) genomic_reference:SL2.40ch01 gene_region:75523181-75524585 transcript_region:SL2.40ch01:75523181..75524585- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6UB13_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00000854g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|0.66|0.5|0.33|3|0|216; (*GB) gi|356516464|ref|XP_003526914.1| (e_value=1e-111) PREDICTED: probable aquaporin PIP2-8-like [Glycine max];; (*SWP) sp|P93004|PIP27_ARATH (e_value=2e-112) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=2e-113) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc02g083510.2.1 (e_value=8e-113) genomic_reference:SL2.40ch02 gene_region:41456730-41458872 transcript_region:SL2.40ch02:41456730..41458872- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q9FUC0_BRAOL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00061895g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|0|1|0|88; (*GB) gi|197725474|gb|ACH72969.1| (e_value=2e-18) major latex-like protein [Panax ginseng];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=1e-13) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70840.1 (e_value=3e-13) | Symbols: MLP31 | MLP-like protein 31 | chr1:26713170-26714014 REVERSE LENGTH=171;; (*ITAG) Solyc09g005500.2.1 (e_value=4e-40) genomic_reference:SL2.40ch09 gene_region:339412-340474 transcript_region:SL2.40ch09:339412..340474+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00030399g0001.1 protein AED:0.09 eAED:0.13 QI:0|0.4|0.5|1|1|1|6|0|555; (*GB) gi|356523165|ref|XP_003530212.1| (e_value=0.0) PREDICTED: laccase-17-like [Glycine max];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g010990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4344657-4347241 transcript_region:SL2.40ch09:4344657..4347241+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00030399g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.33|1|0.6|0.66|6|0|551; (*GB) gi|224090738|ref|XP_002309069.1| (e_value=0.0) laccase 110c [Populus trichocarpa];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00022866g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|439 NbS00022866g0307.1 protein AED:0.23 eAED:0.23 QI:185|0.5|0.33|0.66|1|1|3|162|121 NbS00022866g0311.1 protein AED:0.39 eAED:0.67 QI:0|0|0|0.55|0.5|0.66|9|0|351 NbS00022866g0310.1 protein AED:0.45 eAED:0.81 QI:0|0|0|1|0|0.5|2|0|70 NbS00032246g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|224122102|ref|XP_002318753.1| (e_value=1e-37) SAUR family protein [Populus trichocarpa];; (*TAIR) AT5G50760.1 (e_value=7e-25) | Symbols: | SAUR-like auxin-responsive protein family | chr5:20644780-20645331 FORWARD LENGTH=183;; (*ITAG) Solyc03g097510.1.1 (e_value=2e-73) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:53290675-53291151 transcript_region:SL2.40ch03:53290675..53291151- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00041051g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.9|0.72|1|0.9|0.81|11|0|801; (*GB) gi|359495000|ref|XP_003634896.1| (e_value=0.0) PREDICTED: beta-galactosidase [Vitis vinifera];; (*SWP) sp|Q6LL68|BGAL_PHOPR (e_value=3e-166) Beta-galactosidase OS=Photobacterium profundum GN=lacZ PE=3 SV=1;; (*TAIR) AT3G54440.1 (e_value=0.0) | Symbols: | glycoside hydrolase family 2 protein | chr3:20148494-20157019 REVERSE LENGTH=1107;; (*ITAG) Solyc08g014480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4483718-4509241 transcript_region:SL2.40ch08:4483718..4509241- go_terms:GO:0005515 functional_description:"Beta Galactosidase-like protein (AHRD V1 ***- Q9M1I3_ARATH); contains Interpro domain(s) IPR006103 Glycoside hydrolase family 2, TIM barrel "; GO:0005515 NbS00041051g0010.1 protein AED:0.18 eAED:0.51 QI:0|0|0|1|1|0.5|2|0|200 NbS00041051g0009.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.2|1|0.8|5|0|194; (*GB) gi|225465868|ref|XP_002266400.1| (e_value=5e-80) PREDICTED: beta-galactosidase isoform 1 [Vitis vinifera];; (*SWP) sp|Q56307|BGAL_THEMA (e_value=3e-34) Beta-galactosidase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=lacZ PE=3 SV=2;; (*TAIR) AT3G54440.2 (e_value=6e-73) | Symbols: | glycoside hydrolase family 2 protein | chr3:20148494-20157019 REVERSE LENGTH=1108;; (*ITAG) Solyc08g014480.2.1 (e_value=3e-97) genomic_reference:SL2.40ch08 gene_region:4483718-4509241 transcript_region:SL2.40ch08:4483718..4509241- go_terms:GO:0005515 functional_description:"Beta Galactosidase-like protein (AHRD V1 ***- Q9M1I3_ARATH); contains Interpro domain(s) IPR006103 Glycoside hydrolase family 2, TIM barrel "; GO:0005515 NbS00011493g0005.1 protein AED:0.09 eAED:0.09 QI:31|0.81|0.66|1|0.72|0.75|12|193|452; (*GB) gi|296084918|emb|CBI28327.3| (e_value=3e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=5e-96) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT1G08320.3 (e_value=2e-151) | Symbols: TGA9, bZIP21 | bZIP transcription factor family protein | chr1:2622113-2627451 REVERSE LENGTH=481;; (*ITAG) Solyc06g074320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42332448-42338082 transcript_region:SL2.40ch06:42332448..42338082+ go_terms:GO:0005515,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 ***- Q93XM6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0003677 NbS00017309g0014.1 protein AED:0.22 eAED:0.22 QI:300|0.71|0.87|1|1|1|8|329|225; (*GB) gi|388500596|gb|AFK38364.1| (e_value=3e-121) unknown [Lotus japonicus];; (*SWP) sp|Q4PF70|GPN3_USTMA (e_value=3e-59) GPN-loop GTPase 3 homolog UM01243 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=UM01243 PE=3 SV=1;; (*TAIR) AT4G12790.5 (e_value=2e-99) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7517280-7518892 REVERSE LENGTH=271;; (*ITAG) Solyc09g020140.2.1 (e_value=9e-130) genomic_reference:SL2.40ch09 gene_region:18639148-18643856 transcript_region:SL2.40ch09:18639148..18643856- go_terms:GO:0005515 functional_description:"GPN-loop GTPase 3 (AHRD V1 ***- D3BV94_POLPA); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515 NbS00017309g0015.1 protein AED:0.45 eAED:0.46 QI:0|0.85|0.62|0.87|0.57|0.5|8|0|258; (*GB) gi|225434010|ref|XP_002272798.1| (e_value=5e-88) PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera];; (*TAIR) AT3G07565.1 (e_value=2e-84) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=258;; (*ITAG) Solyc09g020000.2.1 (e_value=8e-128) genomic_reference:SL2.40ch09 gene_region:18083123-18106956 transcript_region:SL2.40ch09:18083123..18106956- functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *-*- Q9SRQ9_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; NbS00017309g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.85|1|0.66|0.85|7|201|272; (*GB) gi|77999273|gb|ABB16983.1| (e_value=6e-133) unknown [Solanum tuberosum];; (*SWP) sp|Q6UNT2|RL5_CUCSA (e_value=3e-127) 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1;; (*TAIR) AT3G25520.1 (e_value=2e-125) | Symbols: ATL5, PGY3, OLI5, RPL5A | ribosomal protein L5 | chr3:9269573-9271327 REVERSE LENGTH=301;; (*ITAG) Solyc06g082870.2.1 (e_value=2e-140) genomic_reference:SL2.40ch06 gene_region:44805209-44808923 transcript_region:SL2.40ch06:44805209..44808923+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic "; GO:0005840 NbS00017309g0123.1 protein AED:0.09 eAED:0.12 QI:37|0.78|0.66|1|0.92|0.86|15|87|959 NbS00017309g0102.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.87|1|1|1|8|541|962 NbS00017309g0124.1 protein AED:0.14 eAED:0.16 QI:78|0.5|0.6|1|0|0.2|5|0|330 NbS00017309g0120.1 protein AED:0.41 eAED:0.41 QI:81|1|0.75|1|0.66|0.5|4|0|258 NbS00017309g0121.1 protein AED:0.10 eAED:0.10 QI:75|1|1|1|1|0.83|6|255|252 NbS00017309g0105.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|1|1|2|262|489 NbS00037611g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|6|0|239; (*GB) gi|224055797|ref|XP_002298658.1| (e_value=3e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64670.1 (e_value=9e-56) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr5:25852535-25853880 REVERSE LENGTH=281;; (*ITAG) Solyc02g081310.2.1 (e_value=2e-59) genomic_reference:SL2.40ch02 gene_region:39901020-39904709 transcript_region:SL2.40ch02:39901020..39904709- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 ***- D0P1Y0_PHYIN); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00005547g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.88|0.8|1|0.77|0.9|10|0|447; (*GB) gi|224121022|ref|XP_002330884.1| (e_value=6e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|O64882|BGL17_ARATH (e_value=5e-144) Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1;; (*TAIR) AT2G44480.1 (e_value=4e-145) | Symbols: BGLU17 | beta glucosidase 17 | chr2:18359780-18363001 FORWARD LENGTH=517;; (*ITAG) Solyc10g045240.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:27802696-27807712 transcript_region:SL2.40ch10:27802696..27807712+ go_terms:GO:0019137 functional_description:"Beta-glucosidase D4 (AHRD V1 ***- B2ZUU0_LOTJA); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0019137 NbS00016893g0007.1 protein AED:0.16 eAED:0.19 QI:0|0|0|1|0.5|0.66|3|0|532; (*GB) gi|124358348|gb|ABG37022.1| (e_value=0.0) serine protease [Nicotiana tabacum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=4e-110) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT3G14067.1 (e_value=5e-113) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc08g007610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2149473-2151776 transcript_region:SL2.40ch08:2149473..2151776+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00016893g0004.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|180; (*GB) gi|3413481|emb|CAA07250.1| (e_value=2e-86) serine protease [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-36) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=8e-38) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007670.1.1 (e_value=1e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2169906-2172140 transcript_region:SL2.40ch08:2169906..2172140+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00031045g0004.1 protein AED:0.19 eAED:0.19 QI:81|1|1|1|1|1|3|614|179; (*GB) gi|225423674|ref|XP_002276516.1| (e_value=2e-65) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic [Vitis vinifera];; (*SWP) sp|O81864|FK171_ARATH (e_value=9e-64) Peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP17-1 PE=2 SV=1;; (*TAIR) AT4G19830.1 (e_value=7e-65) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr4:10772579-10773933 REVERSE LENGTH=229;; (*ITAG) Solyc02g069130.2.1 (e_value=7e-89) genomic_reference:SL2.40ch02 gene_region:33663625-33667175 transcript_region:SL2.40ch02:33663625..33667175+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B1WW43_CYAA5); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00044384g0005.1 protein AED:0.24 eAED:0.29 QI:0|0|0|0.8|1|0.8|5|0|432; (*GB) gi|225445082|ref|XP_002280395.1| (e_value=3e-87) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|C0LGX3|HSL2_ARATH (e_value=6e-47) LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1;; (*TAIR) AT5G25930.1 (e_value=3e-80) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc12g008500.1.1 (e_value=5e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1915241-1918466 transcript_region:SL2.40ch12:1915241..1918466+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00011455g0005.1 protein AED:0.15 eAED:0.15 QI:193|1|1|1|1|1|3|444|85; (*GB) gi|225435317|ref|XP_002285144.1| (e_value=9e-34) PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera];; (*TAIR) AT2G28430.1 (e_value=2e-25) | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12159736-12160387 REVERSE LENGTH=85;; (*ITAG) Solyc11g069410.1.1 (e_value=3e-44) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51081439-51084930 transcript_region:SL2.40ch11:51081439..51084930+ functional_description:"Zinc finger C3HC4 type family protein expressed (AHRD V1 **-- Q7XDA5_ORYSJ)"; NbS00011455g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|140; (*GB) gi|359478345|ref|XP_003632110.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100853079 [Vitis vinifera];; (*TAIR) AT2G28410.1 (e_value=5e-17) | Symbols: | unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12156202-12156549 FORWARD LENGTH=115;; (*ITAG) Solyc11g069420.1.1 (e_value=5e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51086106-51086531 transcript_region:SL2.40ch11:51086106..51086531- functional_description:"Genomic DNA chromosome 5 P1 clone MUP24 (AHRD V1 -**- Q9FF54_ARATH)"; NbS00033105g0003.1 protein AED:0.35 eAED:0.47 QI:43|0.33|0.5|0.75|0|0|4|0|87; (*GB) gi|167963236|dbj|BAG09374.1| (e_value=3e-14) peroxisomal hydroxypyruvate reductase [Glycine max];; (*SWP) sp|P13443|DHGY_CUCSA (e_value=1e-15) Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1;; (*TAIR) AT1G68010.1 (e_value=2e-14) | Symbols: HPR, ATHPR1 | hydroxypyruvate reductase | chr1:25493418-25495720 FORWARD LENGTH=386;; (*ITAG) Solyc01g111630.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:89609244-89612993 transcript_region:SL2.40ch01:89609244..89612993+ go_terms:GO:0008266,GO:0030267 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 **** GHRB_YERPS); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008266,GO:0030267 NbS00040789g0008.1 protein AED:0.09 eAED:0.09 QI:145|1|1|1|0.8|0.66|6|889|224; (*GB) gi|225432945|ref|XP_002284360.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100258034 [Vitis vinifera];; (*TAIR) AT3G23090.1 (e_value=9e-21) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr3:8214533-8216983 REVERSE LENGTH=338;; (*ITAG) Solyc09g083400.2.1 (e_value=5e-106) genomic_reference:SL2.40ch09 gene_region:64451249-64453576 transcript_region:SL2.40ch09:64451249..64453576- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00002333g0002.1 protein AED:0.12 eAED:0.22 QI:0|0.66|0.25|1|1|1|4|0|529; (*GB) gi|255579416|ref|XP_002530552.1| (e_value=3e-119) hypothetical protein RCOM_1267370 [Ricinus communis];; (*TAIR) AT1G54380.1 (e_value=2e-77) | Symbols: | spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515;; (*ITAG) Solyc09g098560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67626581-67634305 transcript_region:SL2.40ch09:67626581..67634305+ go_terms:GO:0000398 functional_description:"Survival motor neuron containing protein (AHRD V1 ***- B6TZU2_MAIZE); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398 NbS00002333g0017.1 protein AED:0.04 eAED:0.05 QI:0|0.66|0.5|1|0.66|0.75|4|923|893; (*GB) gi|225428276|ref|XP_002279589.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Vitis vinifera];; (*SWP) sp|Q0WPZ6|PP158_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17140 OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1;; (*TAIR) AT2G17140.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7462820-7465740 FORWARD LENGTH=874;; (*ITAG) Solyc02g021020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:12012758-12016553 transcript_region:SL2.40ch02:12012758..12016553- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL0_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002333g0018.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|0.66|3|0|153; (*GB) gi|225433884|ref|XP_002265131.1| (e_value=1e-53) PREDICTED: uncharacterized protein LOC100268166 [Vitis vinifera];; (*TAIR) AT3G19810.1 (e_value=2e-51) | Symbols: | Protein of unknown function (DUF177) | chr3:6877756-6878812 REVERSE LENGTH=321;; (*ITAG) Solyc02g021050.2.1 (e_value=2e-67) genomic_reference:SL2.40ch02 gene_region:12092053-12098870 transcript_region:SL2.40ch02:12092053..12098870- functional_description:"Predicted metal-binding possibly nucleic acid-binding protein (AHRD V1 *-*- D4LSP3_9FIRM); contains Interpro domain(s) IPR003772 Protein of unknown function DUF177 "; NbS00016746g0012.1 protein AED:0.03 eAED:0.03 QI:140|1|1|1|1|1|2|2225|273; (*GB) gi|224137652|ref|XP_002327179.1| (e_value=3e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=3e-80) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=2e-94) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc01g102330.2.1 (e_value=1e-168) genomic_reference:SL2.40ch01 gene_region:82904754-82906445 transcript_region:SL2.40ch01:82904754..82906445- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D0TLQ4_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00016746g0013.1 protein AED:0.06 eAED:0.06 QI:187|1|1|1|1|1|2|478|761; (*ITAG) Solyc01g102310.2.1 (e_value=2e-110) genomic_reference:SL2.40ch01 gene_region:82889387-82892936 transcript_region:SL2.40ch01:82889387..82892936- functional_description:"Unknown Protein (AHRD V1)"; NbS00016746g0001.1 protein AED:0.28 eAED:0.30 QI:548|0.75|0.66|1|0.75|0.66|9|0|614; (*GB) gi|359487706|ref|XP_002276198.2| (e_value=4e-150) PREDICTED: transcription factor PIF3-like [Vitis vinifera];; (*SWP) sp|O80536|PIF3_ARATH (e_value=2e-46) Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1;; (*TAIR) AT1G09530.2 (e_value=1e-47) | Symbols: PIF3, POC1, PAP3 | phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524;; (*ITAG) Solyc01g102300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82883861-82888441 transcript_region:SL2.40ch01:82883861..82888441+ go_terms:GO:0003700,GO:0042802 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0042802 NbS00010069g0004.1 protein AED:0.00 eAED:0.00 QI:101|1|1|1|1|1|5|83|198; (*GB) gi|115459618|ref|NP_001053409.1| (e_value=5e-42) Os04g0533300 [Oryza sativa Japonica Group];; (*SWP) sp|P93788|REMO_SOLTU (e_value=2e-39) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=8e-38) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc03g025850.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:7627656-7630095 transcript_region:SL2.40ch03:7627656..7630095+ go_terms:GO:0003677 functional_description:"Remorin 1 (AHRD V1 ***- Q9XEX8_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00010069g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|1|0.33|0.25|4|0|168; (*GB) gi|225426860|ref|XP_002283482.1| (e_value=2e-66) PREDICTED: pollen-specific protein SF3 [Vitis vinifera];; (*SWP) sp|P29675|SF3_HELAN (e_value=1e-43) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT2G39900.1 (e_value=5e-63) | Symbols: | GATA type zinc finger transcription factor family protein | chr2:16659136-16660267 FORWARD LENGTH=200;; (*ITAG) Solyc08g080740.2.1 (e_value=3e-86) genomic_reference:SL2.40ch08 gene_region:61112325-61114470 transcript_region:SL2.40ch08:61112325..61114470- go_terms:GO:0008270 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- B5XFL5_SALSA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00029545g0012.1 protein AED:0.32 eAED:0.32 QI:0|0|0.5|1|1|1|2|4|116; (*GB) gi|147833360|emb|CAN72931.1| (e_value=4e-34) hypothetical protein VITISV_020613 [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=3e-23) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.2 (e_value=2e-22) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc01g090360.2.1 (e_value=9e-43) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00029545g0001.1 protein AED:0.35 eAED:0.37 QI:497|0|0.5|1|1|1|2|0|212; (*GB) gi|225446753|ref|XP_002282792.1| (e_value=2e-34) PREDICTED: non-specific lipid-transfer protein A-like [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=4e-29) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.2 (e_value=2e-25) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc01g090350.2.1 (e_value=9e-44) genomic_reference:SL2.40ch01 gene_region:75816344-75817104 transcript_region:SL2.40ch01:75816344..75817104- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00029545g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0.5|1|0|1|2|63|113; (*GB) gi|147833360|emb|CAN72931.1| (e_value=3e-37) hypothetical protein VITISV_020613 [Vitis vinifera];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=2e-28) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.1 (e_value=2e-28) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067568 FORWARD LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=3e-51) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00002390g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.4|0.16|1|0.2|0.33|6|0|247; (*GB) gi|255547924|ref|XP_002515019.1| (e_value=2e-96) protein binding protein, putative [Ricinus communis];; (*TAIR) AT5G01520.1 (e_value=1e-64) | Symbols: | RING/U-box superfamily protein | chr5:206797-208399 FORWARD LENGTH=242;; (*ITAG) Solyc05g014250.2.1 (e_value=3e-140) genomic_reference:SL2.40ch05 gene_region:8012512-8015024 transcript_region:SL2.40ch05:8012512..8015024+ go_terms:GO:0008270 functional_description:"Ring finger protein 141 (AHRD V1 *-*- Q28I63_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00046890g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|657; (*GB) gi|297735966|emb|CBI23940.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0.0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1;; (*TAIR) AT3G20580.1 (e_value=0.0) | Symbols: COBL10 | COBRA-like protein 10 precursor | chr3:7188063-7190416 REVERSE LENGTH=672;; (*ITAG) Solyc07g064200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63669570-63672071 transcript_region:SL2.40ch07:63669570..63672071+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00026403g0005.1 protein AED:0.15 eAED:0.16 QI:0|0.83|0.71|1|0.66|0.71|7|0|379; (*GB) gi|296081586|emb|CBI20591.3| (e_value=2e-128) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25870.1 (e_value=4e-114) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr2:11031159-11034302 FORWARD LENGTH=584;; (*ITAG) Solyc08g066180.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51785433-51796832 transcript_region:SL2.40ch08:51785433..51796832- go_terms:GO:0016020,GO:0008152,GO:0008270 functional_description:"HMP-PP phosphatase (AHRD V1 *--- COF_CITK8); contains Interpro domain(s) IPR013200 HAD superfamily hydrolase-like, type 3 "; GO:0016020,GO:0008152,GO:0008270 NbS00061472g0005.1 protein AED:0.27 eAED:0.28 QI:249|0.90|0.91|1|0.90|1|12|0|558; (*GB) gi|225434548|ref|XP_002277103.1| (e_value=0.0) PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00031498g0014.1 protein AED:0.13 eAED:0.13 QI:0|0.71|0.62|1|0.42|0.75|8|0|498; (*GB) gi|224069890|ref|XP_002303073.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=3e-79) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT3G07340.1 (e_value=3e-80) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:2341188-2343288 REVERSE LENGTH=456;; (*ITAG) Solyc09g057710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45826062-45828447 transcript_region:SL2.40ch09:45826062..45828447- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00031498g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.66|1|0.8|0.83|6|14|625; (*GB) gi|147856582|emb|CAN82493.1| (e_value=0.0) hypothetical protein VITISV_017203 [Vitis vinifera];; (*SWP) sp|Q9SRT3|CSLC6_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 6 OS=Arabidopsis thaliana GN=CSLC6 PE=1 SV=1;; (*TAIR) AT3G07330.1 (e_value=0.0) | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellulose-synthase-like C6 | chr3:2336121-2338942 REVERSE LENGTH=682;; (*ITAG) Solyc09g057640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45660053-45673808 transcript_region:SL2.40ch09:45660053..45673808+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00042487g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.5|1|1|1|6|0|244; (*GB) gi|11559260|dbj|BAB18760.1| (e_value=1e-146) beta-cyanoalanine synthase [Solanum tuberosum];; (*SWP) sp|P32260|CYSKP_SPIOL (e_value=6e-99) Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2;; (*TAIR) AT3G61440.1 (e_value=6e-137) | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368;; (*ITAG) Solyc10g012370.2.1 (e_value=4e-152) genomic_reference:SL2.40ch10 gene_region:5012119-5020595 transcript_region:SL2.40ch10:5012119..5020595- go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q76MX2_SOLTU); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00011638g0007.1 protein AED:0.09 eAED:0.10 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|375; (*GB) gi|297798950|ref|XP_002867359.1| (e_value=7e-93) integral membrane Yip1 family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q54RZ2|YIPF6_DICDI (e_value=6e-20) Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3 SV=2;; (*TAIR) AT2G18840.1 (e_value=8e-95) | Symbols: | Integral membrane Yip1 family protein | chr2:8158288-8159848 FORWARD LENGTH=281;; (*ITAG) Solyc07g018220.2.1 (e_value=1e-100) genomic_reference:SL2.40ch07 gene_region:9780819-9785964 transcript_region:SL2.40ch07:9780819..9785964- go_terms:GO:0017137 functional_description:"Yip1 domain containing protein expressed (AHRD V1 **-- D8L9M4_WHEAT); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00011638g0114.1 protein AED:0.12 eAED:0.12 QI:202|1|1|1|0.83|0.71|7|281|382 NbS00011638g0104.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|374 NbS00011638g0117.1 protein AED:0.08 eAED:0.19 QI:0|0|0|1|0|0|2|0|386 NbS00011638g0116.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|309 NbS00002958g0006.1 protein AED:0.02 eAED:0.02 QI:217|1|0.75|1|0.66|0.75|4|0|363; (*GB) gi|255539827|ref|XP_002510978.1| (e_value=5e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25170.1 (e_value=1e-38) | Symbols: | Uncharacterised conserved protein (UCP012943) | chr4:12909740-12911389 FORWARD LENGTH=344;; (*ITAG) Solyc03g093340.2.1 (e_value=6e-127) genomic_reference:SL2.40ch03 gene_region:48060313-48064135 transcript_region:SL2.40ch03:48060313..48064135+ functional_description:"Genomic DNA chromosome 5 TAC clone K11J9 (AHRD V1 *-*- Q9FKH0_ARATH)"; NbS00052036g0002.1 protein AED:0.17 eAED:0.19 QI:320|0.66|0.75|1|0.66|0.75|4|185|64 NbS00056925g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|0|0|2|0|75; (*GB) gi|222636716|gb|EEE66848.1| (e_value=2e-39) hypothetical protein OsJ_23635 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SK03|RAP27_ARATH (e_value=2e-35) Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2;; (*TAIR) AT2G28550.1 (e_value=1e-36) | Symbols: RAP2.7, TOE1 | related to AP2.7 | chr2:12226168-12228251 REVERSE LENGTH=449;; (*ITAG) Solyc10g084340.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63251955-63255101 transcript_region:SL2.40ch10:63251955..63255101- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00055598g0005.1 protein AED:0.05 eAED:0.06 QI:0|1|0.85|1|1|1|7|0|329; (*GB) gi|225459864|ref|XP_002285932.1| (e_value=1e-149) PREDICTED: uncharacterized protein LOC100247161 [Vitis vinifera];; (*TAIR) AT1G63610.1 (e_value=4e-134) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). | chr1:23583675-23585599 REVERSE LENGTH=340;; (*ITAG) Solyc04g082310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63614917-63618869 transcript_region:SL2.40ch04:63614917..63618869+ functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00055598g0006.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0|1|1|1|3|0|222; (*GB) gi|298111984|gb|ADI58371.1| (e_value=1e-134) pentatricopeptide repeat-containing protein [Capsicum annuum];; (*SWP) sp|Q9SGQ6|PP126_ARATH (e_value=1e-72) Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2;; (*TAIR) AT1G76280.1 (e_value=8e-74) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28617948-28622581 REVERSE LENGTH=773;; (*ITAG) Solyc04g082320.2.1 (e_value=4e-131) genomic_reference:SL2.40ch04 gene_region:63619395-63628091 transcript_region:SL2.40ch04:63619395..63628091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7RNT7_CAPAN); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001506g0003.1 protein AED:0.07 eAED:0.07 QI:290|0.94|0.89|1|0.72|0.78|19|1970|535; (*GB) gi|297742519|emb|CBI34668.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81635|ATK4_ARATH (e_value=3e-75) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT1G63640.1 (e_value=3e-168) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr1:23589234-23595139 REVERSE LENGTH=1071;; (*ITAG) Solyc08g081120.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61372363-61376666 transcript_region:SL2.40ch08:61372363..61376666- functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 ***- Q9CAC9_ARATH)"; NbS00017375g0002.1 protein AED:0.29 eAED:0.29 QI:152|1|1|1|0.5|0.4|5|677|157; (*GB) gi|224103657|ref|XP_002313142.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01640.2 (e_value=7e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr2:283085-284034 FORWARD LENGTH=156;; (*ITAG) Solyc12g056030.1.1 (e_value=4e-65) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:47353478-47357871 transcript_region:SL2.40ch12:47353478..47357871+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033932g0005.1 protein AED:0.17 eAED:0.17 QI:278|1|1|1|1|1|10|413|470; (*GB) gi|225434229|ref|XP_002275950.1| (e_value=1e-110) PREDICTED: uncharacterized protein LOC100259405 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8BN59|LARP6_MOUSE (e_value=6e-15) La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1;; (*TAIR) AT2G43970.1 (e_value=2e-86) | Symbols: | RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545;; (*ITAG) Solyc12g019000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:8936330-8948218 transcript_region:SL2.40ch12:8936330..8948218- go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"La-related protein 6 (AHRD V1 *--- LARP6_MOUSE); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0030529,GO:0000166 NbS00033932g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|225438710|ref|XP_002282456.1| (e_value=4e-18) PREDICTED: uncharacterized protein LOC100250717 [Vitis vinifera];; (*TAIR) AT4G33985.1 (e_value=3e-15) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc02g090840.2.1 (e_value=2e-29) genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00027957g0006.1 protein AED:0.00 eAED:0.00 QI:79|-1|0|1|-1|1|1|0|66; (*GB) gi|27544010|dbj|BAC54829.1| (e_value=4e-21) vacuolar processing enzyme-2 [Nicotiana tabacum];; (*ITAG) Solyc12g095910.1.1 (e_value=2e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63354423-63359472 transcript_region:SL2.40ch12:63354423..63359472+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-3 (AHRD V1 **-- Q852T0_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00049341g0006.1 protein AED:0.13 eAED:0.13 QI:37|1|1|1|1|1|5|357|199; (*GB) gi|224072433|ref|XP_002303730.1| (e_value=5e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11680.1 (e_value=3e-69) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WW-domain-binding protein (InterPro:IPR018826); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3759463-3760634 FORWARD LENGTH=207;; (*ITAG) Solyc01g008220.2.1 (e_value=4e-81) genomic_reference:SL2.40ch01 gene_region:2351732-2354922 transcript_region:SL2.40ch01:2351732..2354922- functional_description:"Arabinogalactan protein (AHRD V1 ***- B6SST2_MAIZE)"; NbS00049341g0007.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|0|0|3|0|161; (*GB) gi|334902911|gb|AEH25587.1| (e_value=2e-14) transposase [Solanum demissum];; (*ITAG) Solyc03g095560.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:50208925-50209659 transcript_region:SL2.40ch03:50208925..50209659+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00062065g0002.1 protein AED:0.23 eAED:0.31 QI:0|0|0|1|1|1|4|99|257; (*ITAG) Solyc12g015670.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5663236-5663709 transcript_region:SL2.40ch12:5663236..5663709+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016585g0006.1 protein AED:0.17 eAED:0.17 QI:208|1|0.77|1|0.87|0.88|9|35|1041; (*GB) gi|359472765|ref|XP_002276004.2| (e_value=0.0) PREDICTED: copper-transporting ATPase RAN1-like [Vitis vinifera];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=0.0) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=0.0) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00019989g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|0.5|0.33|3|712|106; (*GB) gi|224118830|ref|XP_002317917.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9B4|NDBAA_ARATH (e_value=6e-57) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1;; (*TAIR) AT1G49140.1 (e_value=5e-58) | Symbols: | Complex I subunit NDUFS6 | chr1:18177696-18178269 REVERSE LENGTH=107;; (*ITAG) Solyc12g036790.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:32765403-32770909 transcript_region:SL2.40ch12:32765403..32770909- functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 *-*- C1GT14_PARBA)"; NbS00002803g0001.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225461271|ref|XP_002284268.1| (e_value=3e-52) PREDICTED: calcium-binding protein PBP1 [Vitis vinifera];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=3e-34) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT5G54490.1 (e_value=2e-35) | Symbols: PBP1 | pinoid-binding protein 1 | chr5:22121458-22121841 FORWARD LENGTH=127;; (*ITAG) Solyc07g063690.1.1 (e_value=8e-69) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:63311902-63312243 transcript_region:SL2.40ch07:63311902..63312243- go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-* D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00054502g0002.1 protein AED:0.00 eAED:0.00 QI:97|-1|0|1|-1|1|1|0|133; (*GB) gi|125538539|gb|EAY84934.1| (e_value=7e-36) hypothetical protein OsI_06301 [Oryza sativa Indica Group];; (*TAIR) AT2G25590.1 (e_value=6e-36) | Symbols: | Plant Tudor-like protein | chr2:10891295-10893772 FORWARD LENGTH=381;; (*ITAG) Solyc11g007340.1.1 (e_value=5e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1716337-1718630 transcript_region:SL2.40ch11:1716337..1718630+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; GO:0003723 NbS00027077g0004.1 protein AED:0.02 eAED:0.02 QI:70|0.5|0.66|1|1|1|3|177|426; (*GB) gi|224116114|ref|XP_002332000.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=2e-124) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G30080.1 (e_value=2e-179) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:10551231-10553167 REVERSE LENGTH=408;; (*ITAG) Solyc02g070450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34763049-34764796 transcript_region:SL2.40ch02:34763049..34764796- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00001914g0003.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0|0.66|1|1|3|0|179; (*GB) gi|255569920|ref|XP_002525923.1| (e_value=1e-76) 60S ribosomal protein L7a, putative [Ricinus communis];; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-57) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G15790.2 (e_value=5e-61) | Symbols: | RING/U-box superfamily protein | chr5:5149800-5150964 FORWARD LENGTH=232;; (*ITAG) Solyc02g089240.2.1 (e_value=3e-84) genomic_reference:SL2.40ch02 gene_region:45681209-45686565 transcript_region:SL2.40ch02:45681209..45686565- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7KZF4_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00055403g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|147803489|emb|CAN70940.1| (e_value=3e-86) hypothetical protein VITISV_001966 [Vitis vinifera];; (*TAIR) AT4G26490.1 (e_value=4e-66) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr4:13380425-13381231 FORWARD LENGTH=268;; (*ITAG) Solyc07g065910.1.1 (e_value=5e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64721928-64722677 transcript_region:SL2.40ch07:64721928..64722677- functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 **-- Q9FKU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00055403g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|120; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00055403g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0.5|0.33|3|0|119; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010960g0005.1 protein AED:0.12 eAED:0.12 QI:171|1|0.85|1|0.83|1|7|0|487; (*GB) gi|359487802|ref|XP_002284554.2| (e_value=0.0) PREDICTED: probable Xaa-Pro aminopeptidase P-like [Vitis vinifera];; (*SWP) sp|D1ZKF3|AMPP1_SORMK (e_value=2e-94) Probable Xaa-Pro aminopeptidase P OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=AMPP PE=3 SV=1;; (*TAIR) AT3G05350.1 (e_value=0.0) | Symbols: | Metallopeptidase M24 family protein | chr3:1527103-1533843 REVERSE LENGTH=710;; (*ITAG) Solyc01g099110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81192109-81202257 transcript_region:SL2.40ch01:81192109..81202257- go_terms:GO:0016787,GO:0009987 functional_description:"Xaa-pro aminopeptidase (AHRD V1 **-- A1DF27_NEOFI); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0016787,GO:0009987 NbS00050533g0002.1 protein AED:0.03 eAED:0.03 QI:119|1|0.66|1|0.5|0.33|3|0|276; (*GB) gi|359486352|ref|XP_003633433.1| (e_value=7e-121) PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Vitis vinifera];; (*SWP) sp|Q9LYL9|Y3623_ARATH (e_value=2e-89) BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1;; (*TAIR) AT3G56230.1 (e_value=2e-90) | Symbols: | BTB/POZ domain-containing protein | chr3:20860899-20862135 REVERSE LENGTH=282;; (*ITAG) Solyc06g050860.2.1 (e_value=1e-158) genomic_reference:SL2.40ch06 gene_region:30197053-30200697 transcript_region:SL2.40ch06:30197053..30200697- go_terms:GO:0005515 functional_description:"Speckle-type poz protein (AHRD V1 *--- B0X7L3_CULQU); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00013594g0008.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|1|1|5|0|844; (*GB) gi|225430356|ref|XP_002285293.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261073 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9GPJ1|SKEL2_DROME (e_value=8e-14) Protein Skeletor, isoforms D/E OS=Drosophila melanogaster GN=Skeletor PE=1 SV=3;; (*TAIR) AT5G54830.1 (e_value=0.0) | Symbols: | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein | chr5:22273394-22276117 FORWARD LENGTH=907;; (*ITAG) Solyc06g065720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37551492-37554197 transcript_region:SL2.40ch06:37551492..37554197+ go_terms:GO:0004497 functional_description:"DOMON domain-containing protein (AHRD V1 **-- D7MUW8_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0004497 NbS00013594g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.70|0.81|0.90|0.96|0.93|32|323|1502; (*GB) gi|359475843|ref|XP_002282918.2| (e_value=0.0) PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=0.0) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=0.0) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc06g065730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37557813-37598461 transcript_region:SL2.40ch06:37557813..37598461+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00013594g0018.1 protein AED:0.38 eAED:0.38 QI:198|1|0.8|1|1|1|5|0|221; (*GB) gi|225430378|ref|XP_002285330.1| (e_value=3e-127) PREDICTED: Golgi SNARE 11 protein [Vitis vinifera];; (*SWP) sp|Q9LMP7|GOS11_ARATH (e_value=1e-121) Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana GN=GOS11 PE=2 SV=1;; (*TAIR) AT1G15880.1 (e_value=7e-123) | Symbols: GOS11, atgos11 | golgi snare 11 | chr1:5458718-5460089 REVERSE LENGTH=223;; (*ITAG) Solyc06g065740.2.1 (e_value=1e-158) genomic_reference:SL2.40ch06 gene_region:37599549-37605829 transcript_region:SL2.40ch06:37599549..37605829+ go_terms:GO:0000149 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 ***- B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149 NbS00013594g0004.1 protein AED:0.39 eAED:0.40 QI:0|0.33|0|0.75|1|1|4|0|155; (*GB) gi|255557465|ref|XP_002519763.1| (e_value=6e-38) Leucoanthocyanidin dioxygenase, putative [Ricinus communis];; (*SWP) sp|D4N502|DIOX3_PAPSO (e_value=2e-28) Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1;; (*TAIR) AT1G17020.1 (e_value=3e-29) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071430.2.1 (e_value=4e-49) genomic_reference:SL2.40ch02 gene_region:35460364-35462257 transcript_region:SL2.40ch02:35460364..35462257- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_ACTDE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00013594g0019.1 protein AED:0.02 eAED:0.02 QI:69|1|1|1|1|1|3|215|235; (*GB) gi|388502456|gb|AFK39294.1| (e_value=4e-80) unknown [Lotus japonicus];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=2e-16) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT4G31930.1 (e_value=8e-80) | Symbols: | Mitochondrial glycoprotein family protein | chr4:15449710-15450804 REVERSE LENGTH=234;; (*ITAG) Solyc06g065800.2.1 (e_value=2e-144) genomic_reference:SL2.40ch06 gene_region:37627029-37630530 transcript_region:SL2.40ch06:37627029..37630530- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7MAT7_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00013594g0022.1 protein AED:0.47 eAED:0.63 QI:0|0|0|1|0|0|2|0|71; (*GB) gi|224143285|ref|XP_002324904.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g065720.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37551492-37554197 transcript_region:SL2.40ch06:37551492..37554197+ go_terms:GO:0004497 functional_description:"DOMON domain-containing protein (AHRD V1 **-- D7MUW8_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0004497 NbS00049696g0008.1 protein AED:0.01 eAED:0.01 QI:49|1|1|1|0.66|0.75|4|686|204; (*GB) gi|6094014|sp|O82528.1|RL15_PETHY (e_value=4e-125) RecName: Full=60S ribosomal protein L15;; (*SWP) sp|O82528|RL15_PETHY (e_value=1e-126) 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1;; (*TAIR) AT4G16720.1 (e_value=4e-119) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204;; (*ITAG) Solyc06g064630.2.1 (e_value=2e-132) genomic_reference:SL2.40ch06 gene_region:36660253-36662744 transcript_region:SL2.40ch06:36660253..36662744- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbS00049696g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.7|0.54|1|0.9|0.81|11|0|489; (*GB) gi|359495505|ref|XP_002270943.2| (e_value=0.0) PREDICTED: sphingosine kinase B-like [Vitis vinifera];; (*SWP) sp|Q9NYA1|SPHK1_HUMAN (e_value=6e-40) Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1;; (*TAIR) AT4G21540.1 (e_value=0.0) | Symbols: SPHK1 | sphingosine kinase 1 | chr4:11459609-11462356 FORWARD LENGTH=485;; (*ITAG) Solyc02g079030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38231100-38238119 transcript_region:SL2.40ch02:38231100..38238119- go_terms:GO:0017050 functional_description:"Sphingosine kinase 1 (AHRD V1 **** Q28EJ9_XENTR); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00007816g0007.1 protein AED:0.05 eAED:0.00 QI:48|1|0.75|1|0.66|0.25|4|602|401; (*GB) gi|255553705|ref|XP_002517893.1| (e_value=1e-149) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=4e-28) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT5G53390.1 (e_value=3e-41) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:21656951-21659207 REVERSE LENGTH=486;; (*ITAG) Solyc07g053890.2.1 (e_value=1e-160) genomic_reference:SL2.40ch07 gene_region:59621150-59625735 transcript_region:SL2.40ch07:59621150..59625735+ functional_description:"O-acyltransferase WSD1 (AHRD V1 **-- WSD1_ARATH); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00007816g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|0|173; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=3e-32) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT4G32490.1 (e_value=7e-35) | Symbols: ENODL4, AtENODL4 | early nodulin-like protein 4 | chr4:15678811-15679556 REVERSE LENGTH=221;; (*ITAG) Solyc07g053880.1.1 (e_value=7e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00007816g0006.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.66|0.66|1|0.66|3|527|98 NbS00005122g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.33|1|0|0.33|3|30|76 NbS00031733g0016.1 protein AED:0.19 eAED:0.19 QI:116|0.66|0.5|1|0.66|0.75|4|206|228; (*GB) gi|242037057|ref|XP_002465923.1| (e_value=1e-14) hypothetical protein SORBIDRAFT_01g048290 [Sorghum bicolor];; (*SWP) sp|Q10S83|NLP1_ORYSJ (e_value=3e-15) Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1;; (*TAIR) AT4G24020.1 (e_value=7e-13) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g082750.2.1 (e_value=4e-21) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00031733g0005.1 protein AED:0.23 eAED:0.23 QI:271|0.75|0.8|1|0.75|0.6|5|141|142 NbS00031733g0003.1 protein AED:0.11 eAED:0.11 QI:308|1|1|1|0.6|0.5|6|180|488; (*GB) gi|225435520|ref|XP_002285555.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263843 [Vitis vinifera];; (*TAIR) AT4G12070.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7231941-7234272 FORWARD LENGTH=483;; (*ITAG) Solyc11g056620.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:44834269-44843471 transcript_region:SL2.40ch11:44834269..44843471- functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ)"; NbS00031733g0006.1 protein AED:0.87 eAED:0.88 QI:0|0|0|0.2|1|1|5|0|148 NbS00010449g0008.1 protein AED:0.14 eAED:0.14 QI:91|1|1|1|1|1|3|224|311; (*GB) gi|58257682|dbj|BAC53935.2| (e_value=4e-113) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=1e-36) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G60460.1 (e_value=3e-67) | Symbols: DUO1 | myb-like HTH transcriptional regulator family protein | chr3:22342429-22343491 REVERSE LENGTH=297;; (*ITAG) Solyc01g090530.1.1 (e_value=5e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75956882-75959366 transcript_region:SL2.40ch01:75956882..75959366+ go_terms:GO:0016563,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0016563,GO:0003700 NbS00014197g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|334; (*GB) gi|350536593|ref|NP_001234254.1| (e_value=0.0) NO APICAL MERISTEM [Solanum lycopersicum];; (*SWP) sp|O04017|NAC98_ARATH (e_value=4e-106) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT5G53950.1 (e_value=3e-107) | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr5:21901966-21903795 REVERSE LENGTH=375;; (*ITAG) Solyc07g062840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62708889-62711033 transcript_region:SL2.40ch07:62708889..62711033+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1D6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00004804g0006.1 protein AED:0.13 eAED:0.23 QI:27|0.28|0|1|0.42|0.25|8|0|800; (*GB) gi|147836211|emb|CAN75427.1| (e_value=0.0) hypothetical protein VITISV_003301 [Vitis vinifera];; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=3e-165) Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2;; (*TAIR) AT1G14650.2 (e_value=2e-166) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | chr1:5028077-5030520 FORWARD LENGTH=785;; (*ITAG) Solyc04g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:451734-456916 transcript_region:SL2.40ch04:451734..456916+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbS00021244g0002.1 protein AED:0.07 eAED:0.07 QI:165|0.8|0.83|1|0.8|0.66|6|122|314; (*GB) gi|15824408|gb|AAL09328.1|AF302806_1 (e_value=1e-133) steroleosin [Sesamum indicum];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=8e-32) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT5G50700.1 (e_value=6e-121) | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20623259-20624995 REVERSE LENGTH=349;; (*ITAG) Solyc03g097440.2.1 (e_value=2e-176) genomic_reference:SL2.40ch03 gene_region:53209998-53213148 transcript_region:SL2.40ch03:53209998..53213148+ go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00030505g0010.1 protein AED:0.16 eAED:0.16 QI:131|0.66|0.75|1|0.33|0.5|4|240|314; (*GB) gi|255586829|ref|XP_002534027.1| (e_value=3e-72) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=2e-30) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT1G49390.1 (e_value=6e-67) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:18279600-18280873 FORWARD LENGTH=348;; (*ITAG) Solyc10g076840.1.1 (e_value=6e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59131795-59139979 transcript_region:SL2.40ch10:59131795..59139979- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00030505g0013.1 protein AED:0.70 eAED:0.82 QI:0|0|0|0.66|0|0.33|3|0|112 NbS00030505g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|8|0|790; (*GB) gi|1103712|emb|CAA58700.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P21616|AVP_VIGRR (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc07g007600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2247006-2251786 transcript_region:SL2.40ch07:2247006..2251786- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00030505g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|376; (*GB) gi|325516252|gb|ADZ24704.1| (e_value=0.0) arogenate dehydrogenase 1 [Solanum pennellii];; (*SWP) sp|Q9LMR3|TYRA2_ARATH (e_value=5e-159) Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1;; (*TAIR) AT1G15710.1 (e_value=4e-160) | Symbols: | prephenate dehydrogenase family protein | chr1:5404505-5405581 FORWARD LENGTH=358;; (*ITAG) Solyc07g007590.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2239957-2241090 transcript_region:SL2.40ch07:2239957..2241090- go_terms:GO:0008152,GO:0006571 functional_description:"Prephenate dehydrogenase family protein (AHRD V1 ***- D7KDI5_ARALY); contains Interpro domain(s) IPR012070 Arogenate/prephenate dehydrogenase, plant "; GO:0008152,GO:0006571 NbS00003353g0002.1 protein AED:0.10 eAED:0.10 QI:2704|0|0.33|1|1|1|3|0|544; (*GB) gi|224110996|ref|XP_002333000.1| (e_value=5e-30) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q9LRR5|DRL21_ARATH (e_value=5e-11) Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1;; (*TAIR) AT1G69550.1 (e_value=4e-21) | Symbols: | disease resistance protein (TIR-NBS-LRR class) | chr1:26148836-26153374 REVERSE LENGTH=1400;; (*ITAG) Solyc10g085460.1.1 (e_value=6e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00003353g0018.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.4|1|0.75|0.8|5|0|476; (*GB) gi|225439683|ref|XP_002267365.1| (e_value=2e-100) PREDICTED: uncharacterized protein LOC100267140 [Vitis vinifera];; (*SWP) sp|Q9LNG5|PPP7L_ARATH (e_value=4e-16) Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1;; (*TAIR) AT2G25010.1 (e_value=2e-25) | Symbols: | Aminotransferase-like, plant mobile domain family protein | chr2:10631691-10633547 FORWARD LENGTH=509;; (*ITAG) Solyc10g085700.1.1 (e_value=5e-108) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64119318-64122588 transcript_region:SL2.40ch10:64119318..64122588+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 **-- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00003353g0005.1 protein AED:0.46 eAED:0.46 QI:0|1|0|1|1|1|2|0|113; (*GB) gi|225439673|ref|XP_002267193.1| (e_value=3e-56) PREDICTED: uncharacterized protein LOC100260206 [Vitis vinifera];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=2e-42) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=1e-43) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc10g085710.1.1 (e_value=2e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64123015-64129787 transcript_region:SL2.40ch10:64123015..64129787- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA18_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00003353g0024.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|184; (*GB) gi|224139348|ref|XP_002323068.1| (e_value=5e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=1e-48) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=9e-50) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc10g085710.1.1 (e_value=5e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64123015-64129787 transcript_region:SL2.40ch10:64123015..64129787- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA18_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00004651g0006.1 protein AED:0.23 eAED:0.23 QI:0|0.4|0.36|1|0.3|0.45|11|0|388; (*GB) gi|296088995|emb|CBI38698.3| (e_value=7e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MAM1|CIPK9_ARATH (e_value=2e-104) CBL-interacting serine/threonine-protein kinase 9 OS=Arabidopsis thaliana GN=CIPK9 PE=1 SV=2;; (*TAIR) AT1G01140.1 (e_value=1e-105) | Symbols: CIPK9, SnRK3.12, PKS6 | CBL-interacting protein kinase 9 | chr1:64398-67512 REVERSE LENGTH=447;; (*ITAG) Solyc05g047600.2.1 (e_value=4e-132) genomic_reference:SL2.40ch05 gene_region:58249286-58253191 transcript_region:SL2.40ch05:58249286..58253191- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 12 (AHRD V1 ***- A0MNJ9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00001452g0013.1 protein AED:0.54 eAED:0.54 QI:2|0.33|0.14|0.71|0.5|0.57|7|0|173; (*GB) gi|297842269|ref|XP_002889016.1| (e_value=3e-34) hypothetical protein ARALYDRAFT_895389 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=2e-35) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1;; (*TAIR) AT1G75220.1 (e_value=1e-36) | Symbols: | Major facilitator superfamily protein | chr1:28229412-28232606 REVERSE LENGTH=487;; (*ITAG) Solyc02g085170.2.1 (e_value=2e-45) genomic_reference:SL2.40ch02 gene_region:42731172-42736962 transcript_region:SL2.40ch02:42731172..42736962+ go_terms:GO:0015519 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00001452g0012.1 protein AED:0.09 eAED:0.09 QI:319|1|1|1|0.83|0.57|7|76|344; (*GB) gi|225428745|ref|XP_002285039.1| (e_value=0.0) PREDICTED: nodulation protein H [Vitis vinifera];; (*TAIR) AT2G15730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc01g108510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87573558-87580500 transcript_region:SL2.40ch01:87573558..87580500- functional_description:"Nodulation protein H (AHRD V1 ***- NOH4_RHIME)"; NbS00001452g0014.1 protein AED:0.14 eAED:0.14 QI:252|0.75|0.6|1|0.75|0.8|5|543|402; (*GB) gi|2708532|gb|AAB92518.1| (e_value=5e-177) putative RNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=2e-178) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*TAIR) AT3G19130.1 (e_value=6e-114) | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435;; (*ITAG) Solyc01g108500.2.1 (e_value=4e-167) genomic_reference:SL2.40ch01 gene_region:87565501-87571455 transcript_region:SL2.40ch01:87565501..87571455- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **-* PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00027425g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|224128474|ref|XP_002320341.1| (e_value=1e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZH8|OP164_ARATH (e_value=1e-35) Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1;; (*TAIR) AT3G62880.2 (e_value=9e-37) | Symbols: ATOEP16-4 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:23245103-23246002 REVERSE LENGTH=136;; (*ITAG) Solyc06g084550.2.1 (e_value=7e-69) genomic_reference:SL2.40ch06 gene_region:45923087-45926101 transcript_region:SL2.40ch06:45923087..45926101- go_terms:GO:0015450 functional_description:"Atoep16-4 (AHRD V1 ***- D7LTA7_ARALY); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00027425g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|0.8|0.5|0.6|5|0|285; (*GB) gi|224143022|ref|XP_002324822.1| (e_value=1e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|O52225|DPO1_THEFI (e_value=1e-39) DNA polymerase I, thermostable OS=Thermus filiformis GN=polA PE=1 SV=1;; (*TAIR) AT4G32700.2 (e_value=1e-142) | Symbols: | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154;; (*ITAG) Solyc08g068120.1.1 (e_value=2e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54406897-54423148 transcript_region:SL2.40ch08:54406897..54423148+ go_terms:GO:0005524,GO:0006260 functional_description:"DNA polymerase I family protein expressed (AHRD V1 ***- Q2QTK2_ORYSJ); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0005524,GO:0006260 NbS00025870g0006.1 protein AED:0.39 eAED:0.40 QI:0|1|0|1|1|1|3|0|201; (*ITAG) Solyc01g010440.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00025870g0005.1 protein AED:0.45 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|80; (*GB) gi|296086442|emb|CBI32031.3| (e_value=7e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27090.1 (e_value=5e-26) | Symbols: | glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420;; (*ITAG) Solyc01g010440.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00028647g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|355; (*GB) gi|147803361|emb|CAN71048.1| (e_value=2e-169) hypothetical protein VITISV_006741 [Vitis vinifera];; (*SWP) sp|Q9LZW3|PUB16_ARATH (e_value=3e-143) U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1;; (*TAIR) AT5G01830.1 (e_value=2e-144) | Symbols: | ARM repeat superfamily protein | chr5:320983-323007 FORWARD LENGTH=674;; (*ITAG) Solyc09g018230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:13637609-13639675 transcript_region:SL2.40ch09:13637609..13639675- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00028647g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|255554481|ref|XP_002518279.1| (e_value=1e-35) hypothetical protein RCOM_0815310 [Ricinus communis];; (*TAIR) AT1G06920.1 (e_value=7e-27) | Symbols: ATOFP4, OFP4 | ovate family protein 4 | chr1:2124854-2125801 REVERSE LENGTH=315;; (*ITAG) Solyc09g018200.1.1 (e_value=2e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:13537071-13537826 transcript_region:SL2.40ch09:13537071..13537826- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00028647g0003.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|147803361|emb|CAN71048.1| (e_value=5e-63) hypothetical protein VITISV_006741 [Vitis vinifera];; (*SWP) sp|Q9LZW3|PUB16_ARATH (e_value=2e-46) U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1;; (*TAIR) AT5G01830.1 (e_value=2e-47) | Symbols: | ARM repeat superfamily protein | chr5:320983-323007 FORWARD LENGTH=674;; (*ITAG) Solyc09g018230.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:13637609-13639675 transcript_region:SL2.40ch09:13637609..13639675- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00010877g0011.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0|1|0.33|0.5|4|0|494; (*GB) gi|224131638|ref|XP_002321140.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q92890|UFD1_HUMAN (e_value=1e-21) Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3;; (*TAIR) AT4G15420.1 (e_value=0.0) | Symbols: | Ubiquitin fusion degradation UFD1 family protein | chr4:8823822-8825949 FORWARD LENGTH=561;; (*ITAG) Solyc07g048120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56637380-56644852 transcript_region:SL2.40ch07:56637380..56644852+ go_terms:GO:0006508,GO:0006511 functional_description:"Ubiquitin fusion degradation protein 1 (AHRD V1 ***- C5FJE2_NANOT); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 "; GO:0006508,GO:0006511 NbS00010877g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|206; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-26) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=3e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010877g0012.1 protein AED:0.24 eAED:0.27 QI:0|0|0|0.75|0|0|4|0|229; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-71) hypothetical protein [Nicotiana tabacum]; NbS00025679g0101.1 protein AED:0.26 eAED:0.26 QI:299|0.91|0.92|1|0.83|0.76|13|1380|309 NbS00025679g0108.1 protein AED:0.28 eAED:0.28 QI:0|0.68|0.60|0.95|0.63|0.73|23|0|1039 NbS00015458g0012.1 protein AED:0.16 eAED:0.16 QI:415|1|0.81|1|0.8|0.90|11|0|337; (*GB) gi|225461961|ref|XP_002270197.1| (e_value=0.0) PREDICTED: SEC14-like protein 5 [Vitis vinifera];; (*SWP) sp|Q0V9N0|S14L5_XENTR (e_value=4e-18) SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1;; (*TAIR) AT1G55840.1 (e_value=1e-180) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:20873891-20876018 FORWARD LENGTH=325;; (*ITAG) Solyc11g012790.1.1 (e_value=2e-164) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5558186-5562111 transcript_region:SL2.40ch11:5558186..5562111- functional_description:"SEC14-like protein 1 (AHRD V1 **-- B6TAH4_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00015458g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|675; (*GB) gi|255563560|ref|XP_002522782.1| (e_value=0.0) Paramyosin, putative [Ricinus communis];; (*SWP) sp|Q9LVQ4|Y5586_ARATH (e_value=2e-149) WEB family protein At5g55860 OS=Arabidopsis thaliana GN=At5g55860 PE=2 SV=1;; (*TAIR) AT5G55860.1 (e_value=1e-150) | Symbols: | Plant protein of unknown function (DUF827) | chr5:22610146-22612166 FORWARD LENGTH=649;; (*ITAG) Solyc07g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64579556-64582510 transcript_region:SL2.40ch07:64579556..64582510+ functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q9LVQ4_ARATH); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00015458g0002.1 protein AED:0.35 eAED:0.35 QI:0|0.66|0.75|1|1|1|4|720|238; (*GB) gi|225461959|ref|XP_002270063.1| (e_value=3e-86) PREDICTED: uncharacterized protein LOC100258311 [Vitis vinifera];; (*SWP) sp|Q6FLQ5|AIM32_CANGA (e_value=8e-16) Altered inheritance of mitochondria protein 32 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=AIM32 PE=3 SV=1;; (*TAIR) AT4G26620.1 (e_value=1e-87) | Symbols: | Sucrase/ferredoxin-like family protein | chr4:13427599-13429877 REVERSE LENGTH=443;; (*ITAG) Solyc07g065690.2.1 (e_value=2e-114) genomic_reference:SL2.40ch07 gene_region:64588061-64591664 transcript_region:SL2.40ch07:64588061..64591664+ functional_description:"Sucrose cleavage protein-like (AHRD V1 **-- B6TKT6_MAIZE); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00015458g0006.1 protein AED:0.83 eAED:0.83 QI:37|0|0.5|0.5|1|0.5|2|0|54 NbS00007561g0006.1 protein AED:0.24 eAED:0.24 QI:379|0.62|0.44|1|0.5|0.55|9|0|480; (*GB) gi|359497127|ref|XP_003635430.1| (e_value=2e-104) PREDICTED: uncharacterized protein LOC100855167 [Vitis vinifera];; (*TAIR) AT5G67550.1 (e_value=8e-77) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26946908-26949112 REVERSE LENGTH=509;; (*ITAG) Solyc02g092340.2.1 (e_value=4e-116) genomic_reference:SL2.40ch02 gene_region:48020174-48022352 transcript_region:SL2.40ch02:48020174..48022352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014190g0004.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|394; (*GB) gi|224108926|ref|XP_002315018.1| (e_value=2e-155) predicted protein [Populus trichocarpa];; (*TAIR) AT2G03360.2 (e_value=8e-130) | Symbols: | Glycosyltransferase family 61 protein | chr2:1022287-1024273 REVERSE LENGTH=455;; (*ITAG) Solyc05g012660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5871174-5872877 transcript_region:SL2.40ch05:5871174..5872877+ go_terms:GO:0016757,GO:0006508 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ5_WHEAT); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757,GO:0006508 NbS00014190g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|595|226; (*GB) gi|225424977|ref|XP_002266182.1| (e_value=1e-89) PREDICTED: uncharacterized protein At5g01610 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=6e-49) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT2G03350.1 (e_value=1e-83) | Symbols: | Protein of unknown function, DUF538 | chr2:1019733-1021071 REVERSE LENGTH=179;; (*ITAG) Solyc05g012680.2.1 (e_value=9e-107) genomic_reference:SL2.40ch05 gene_region:5878699-5881106 transcript_region:SL2.40ch05:5878699..5881106+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00014190g0007.1 protein AED:0.39 eAED:0.39 QI:7|1|1|1|0.6|0.66|6|178|270; (*GB) gi|224112166|ref|XP_002316104.1| (e_value=9e-149) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03441|RMD1_YEAST (e_value=8e-11) Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1;; (*TAIR) AT1G69380.1 (e_value=6e-143) | Symbols: | Protein of unknown function (DUF155) | chr1:26081729-26083431 REVERSE LENGTH=373;; (*ITAG) Solyc05g012690.2.1 (e_value=4e-178) genomic_reference:SL2.40ch05 gene_region:5881436-5887946 transcript_region:SL2.40ch05:5881436..5887946- functional_description:"Sporulation protein RMD1 (AHRD V1 *--- C1GIQ5_PARBD); contains Interpro domain(s) IPR003734 Protein of unknown function DUF155 "; NbS00052719g0003.1 protein AED:0.00 eAED:0.00 QI:231|1|0.85|1|1|1|7|536|465; (*GB) gi|224117360|ref|XP_002317553.1| (e_value=1e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=3e-56) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT3G20640.1 (e_value=2e-57) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454;; (*ITAG) Solyc07g063830.2.1 (e_value=1e-169) genomic_reference:SL2.40ch07 gene_region:63384804-63388585 transcript_region:SL2.40ch07:63384804..63388585- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00025713g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.53|0.92|0.5|0.61|13|0|422; (*GB) gi|296085487|emb|CBI29219.3| (e_value=2e-128) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G19420.1 (e_value=1e-124) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075030.2.1 (e_value=2e-172) genomic_reference:SL2.40ch08 gene_region:56353726-56357296 transcript_region:SL2.40ch08:56353726..56357296- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00006675g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|1|1|3|416|592; (*GB) gi|225470260|ref|XP_002264285.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-associated protein 18 homolog [Vitis vinifera];; (*SWP) sp|Q9FMU5|UTP18_ARATH (e_value=0.0) U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1;; (*TAIR) AT5G14050.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4533539-4535179 FORWARD LENGTH=546;; (*ITAG) Solyc10g080180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60867892-60869391 transcript_region:SL2.40ch10:60867892..60869391- go_terms:GO:0005515,GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein 18 (AHRD V1 **-- D0MWK6_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00006675g0002.1 protein AED:0.17 eAED:0.20 QI:0|0.28|0|0.87|1|1|8|0|974; (*GB) gi|357933573|dbj|BAL15053.1| (e_value=0.0) glutamate receptor 2.6 [Solanum lycopersicum];; (*SWP) sp|Q8LGN0|GLR27_ARATH (e_value=0.0) Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3;; (*TAIR) AT2G29120.1 (e_value=0.0) | Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952;; (*ITAG) Solyc08g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00006675g0111.1 protein AED:0.19 eAED:0.20 QI:0|0.8|0.33|1|1|1|6|0|1081 NbS00006675g0104.1 protein AED:0.06 eAED:0.06 QI:56|0.8|0.66|1|0.8|0.66|6|0|941 NbS00006675g0115.1 protein AED:0.11 eAED:0.15 QI:1094|0.25|0.6|1|0.5|0.6|5|125|205 NbS00006675g0206.1 protein AED:0.11 eAED:0.11 QI:38|1|1|1|1|1|2|179|510 NbS00038095g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.6|1|1|0.8|5|0|138; (*GB) gi|147803520|emb|CAN66421.1| (e_value=3e-18) hypothetical protein VITISV_007981 [Vitis vinifera];; (*ITAG) Solyc06g071580.2.1 (e_value=3e-54) genomic_reference:SL2.40ch06 gene_region:40458951-40471817 transcript_region:SL2.40ch06:40458951..40471817+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00038095g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.9|0.72|1|1|1|11|0|397; (*GB) gi|225456973|ref|XP_002278685.1| (e_value=3e-169) PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=2e-46) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT1G19100.1 (e_value=1e-165) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663;; (*ITAG) Solyc06g071580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40458951-40471817 transcript_region:SL2.40ch06:40458951..40471817+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00034980g0004.1 protein AED:0.22 eAED:0.39 QI:0|0|0|1|0.66|0.5|4|0|144; (*GB) gi|255562595|ref|XP_002522303.1| (e_value=4e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G15730.1 (e_value=1e-55) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc02g090620.2.1 (e_value=1e-69) genomic_reference:SL2.40ch02 gene_region:46742319-46745553 transcript_region:SL2.40ch02:46742319..46745553- functional_description:"Unknown Protein (AHRD V1)"; NbS00009984g0010.1 protein AED:0.11 eAED:0.11 QI:333|0.85|0.90|1|1|1|21|446|1076; (*GB) gi|225449971|ref|XP_002272290.1| (e_value=0.0) PREDICTED: protein transport protein SEC31 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5R4F4|SC31A_PONAB (e_value=3e-126) Protein transport protein Sec31A OS=Pongo abelii GN=SEC31A PE=2 SV=1;; (*TAIR) AT3G63460.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:23431009-23437241 REVERSE LENGTH=1104;; (*ITAG) Solyc01g088020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74630101-74643687 transcript_region:SL2.40ch01:74630101..74643687+ go_terms:GO:0048306 functional_description:"Protein transport protein sec31 (AHRD V1 **-- C8V1I6_EMENI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0048306 NbS00009984g0009.1 protein AED:0.11 eAED:0.11 QI:96|1|1|1|0|0.66|3|147|230; (*GB) gi|224055063|ref|XP_002298410.1| (e_value=7e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|B6JY16|SLX1_SCHJY (e_value=1e-12) Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=slx1 PE=3 SV=1;; (*TAIR) AT5G43210.1 (e_value=9e-50) | Symbols: | Excinuclease ABC, C subunit, N-terminal | chr5:17347567-17348379 FORWARD LENGTH=170;; (*ITAG) Solyc01g088030.2.1 (e_value=9e-92) genomic_reference:SL2.40ch01 gene_region:74645626-74648995 transcript_region:SL2.40ch01:74645626..74648995+ go_terms:GO:0005622 functional_description:"Structure-specific endonuclease subunit slx1 (AHRD V1 *-*- D3PJZ8_9MAXI); contains Interpro domain(s) IPR000305 Excinuclease ABC, C subunit, N-terminal "; GO:0005622 NbS00028441g0014.1 protein AED:0.16 eAED:0.16 QI:473|0.75|0.6|1|0.75|0.8|5|364|577; (*GB) gi|255584852|ref|XP_002533142.1| (e_value=0.0) Tetratricopeptide repeat protein, putative [Ricinus communis];; (*SWP) sp|Q84JR9|TTL4_ARATH (e_value=3e-90) TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1;; (*TAIR) AT5G65160.1 (e_value=8e-177) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g055000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52677997-52681378 transcript_region:SL2.40ch04:52677997..52681378- go_terms:GO:0030544 functional_description:"Tetratricopeptide repeat protein 4 homolog (AHRD V1 *--- TTC4_DICDI); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544 NbS00028441g0012.1 protein AED:0.03 eAED:0.18 QI:0|0.66|0.75|1|0|0|4|238|292; (*GB) gi|255587559|ref|XP_002534311.1| (e_value=1e-134) succinate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9FJP9|DHSB3_ARATH (e_value=1e-123) Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=2 SV=1;; (*TAIR) AT5G65165.1 (e_value=8e-125) | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | chr5:26034515-26035922 REVERSE LENGTH=309;; (*ITAG) Solyc04g055020.1.1 (e_value=3e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52691322-52693892 transcript_region:SL2.40ch04:52691322..52693892- go_terms:GO:0000104 functional_description:"Iron sulfur subunit of succinate dehydrogenase (AHRD V1 **** Q9XGC8_MAIZE); contains Interpro domain(s) IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein "; GO:0000104 NbS00028441g0013.1 protein AED:0.37 eAED:0.37 QI:258|1|0.83|1|1|1|6|0|237; (*GB) gi|359496353|ref|XP_003635216.1| (e_value=5e-81) PREDICTED: protein SCO1 homolog 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8LAL0|SCO12_ARATH (e_value=3e-64) Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1;; (*TAIR) AT4G39740.1 (e_value=2e-65) | Symbols: | Thioredoxin superfamily protein | chr4:18435586-18437095 REVERSE LENGTH=276;; (*ITAG) Solyc04g055010.2.1 (e_value=1e-132) genomic_reference:SL2.40ch04 gene_region:52686505-52690885 transcript_region:SL2.40ch04:52686505..52690885- go_terms:GO:0008379,GO:0016531 functional_description:"Copper chaperone SCO1 (AHRD V1 *--* D3NSK1_AZOS1); contains Interpro domain(s) IPR003782 Copper chaperone SCO1/SenC "; GO:0008379,GO:0016531 NbS00017150g0014.1 protein AED:0.17 eAED:0.17 QI:41|1|0.5|1|1|1|2|0|268; (*GB) gi|255558562|ref|XP_002520306.1| (e_value=3e-147) ganglioside-induced differentiation-associated protein 1, 2 gdap, putative [Ricinus communis];; (*SWP) sp|O80662|TCHQD_ARATH (e_value=6e-140) Glutathione S-transferase TCHQD OS=Arabidopsis thaliana GN=TCHQD PE=2 SV=1;; (*TAIR) AT1G77290.2 (e_value=5e-141) | Symbols: | Glutathione S-transferase family protein | chr1:29038917-29039815 FORWARD LENGTH=266;; (*ITAG) Solyc04g057890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54159851-54162705 transcript_region:SL2.40ch04:54159851..54162705- functional_description:"Ganglioside-induced differentiation-associated protein 1 (AHRD V1 **-- Q78AN2_DANRE); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; NbS00017150g0004.1 protein AED:0.05 eAED:0.05 QI:55|1|1|1|0.83|0.71|7|537|331; (*GB) gi|317106688|dbj|BAJ53190.1| (e_value=3e-152) JMS09K11.8 [Jatropha curcas];; (*TAIR) AT1G21600.2 (e_value=9e-147) | Symbols: PTAC6 | plastid transcriptionally active 6 | chr1:7571514-7573782 REVERSE LENGTH=328;; (*ITAG) Solyc04g057870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54113945-54119907 transcript_region:SL2.40ch04:54113945..54119907+ functional_description:"Os11g0110100 protein (Fragment) (AHRD V1 ***- Q0IV61_ORYSJ)"; NbS00017150g0015.1 protein AED:0.12 eAED:0.12 QI:0|0.89|0.85|1|0.68|0.7|20|386|1597; (*GB) gi|302141761|emb|CBI18964.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2LAE1|ASHH2_ARATH (e_value=9e-144) Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1;; (*TAIR) AT1G77300.2 (e_value=2e-146) | Symbols: EFS, SDG8, ASHH2, LAZ2 | histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) | chr1:29040936-29048810 REVERSE LENGTH=1501;; (*ITAG) Solyc04g057880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54137198-54159396 transcript_region:SL2.40ch04:54137198..54159396+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K1E8_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0008270 NbS00041081g0013.1 protein AED:0.25 eAED:0.26 QI:0|0.8|0.5|1|0.8|0.66|6|0|274; (*GB) gi|224061829|ref|XP_002300619.1| (e_value=9e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=2e-45) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G33590.1 (e_value=8e-99) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14224622-14226365 FORWARD LENGTH=321;; (*ITAG) Solyc04g082780.2.1 (e_value=1e-138) genomic_reference:SL2.40ch04 gene_region:63922431-63926074 transcript_region:SL2.40ch04:63922431..63926074- go_terms:GO:0016621,GO:0004022 functional_description:"Cinnamoyl CoA reductase-like 1 (AHRD V1 **** D2IX48_9POAL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621,GO:0004022 NbS00041081g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.33|1|0.4|0.5|6|420|252; (*GB) gi|224061829|ref|XP_002300619.1| (e_value=2e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=9e-41) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G33590.1 (e_value=5e-93) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14224622-14226365 FORWARD LENGTH=321;; (*ITAG) Solyc04g082780.2.1 (e_value=4e-128) genomic_reference:SL2.40ch04 gene_region:63922431-63926074 transcript_region:SL2.40ch04:63922431..63926074- go_terms:GO:0016621,GO:0004022 functional_description:"Cinnamoyl CoA reductase-like 1 (AHRD V1 **** D2IX48_9POAL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621,GO:0004022 NbS00041081g0014.1 protein AED:0.37 eAED:0.38 QI:0|1|0|1|1|1|2|0|117; (*GB) gi|359491921|ref|XP_002273353.2| (e_value=3e-58) PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera];; (*SWP) sp|Q7T3I7|RBM38_XENLA (e_value=5e-33) RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2;; (*TAIR) AT1G76460.1 (e_value=6e-60) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28686932-28688506 REVERSE LENGTH=285;; (*ITAG) Solyc04g082770.2.1 (e_value=7e-63) genomic_reference:SL2.40ch04 gene_region:63917694-63921381 transcript_region:SL2.40ch04:63917694..63921381- go_terms:GO:0008266 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00019102g0007.1 protein AED:0.11 eAED:0.11 QI:113|1|1|1|0.77|0.9|10|316|492; (*GB) gi|225436687|ref|XP_002263127.1| (e_value=0.0) PREDICTED: fatty acyl-CoA reductase 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=2e-172) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=2e-173) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50014211-50020961 transcript_region:SL2.40ch11:50014211..50020961- go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00024531g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.88|0.8|1|1|1|10|0|571; (*GB) gi|27463709|gb|AAO15916.1| (e_value=0.0) neutral leucine aminopeptidase preprotein [Solanum lycopersicum];; (*SWP) sp|Q42876|AMPL2_SOLLC (e_value=0.0) Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1;; (*TAIR) AT4G30920.1 (e_value=0.0) | Symbols: | Cytosol aminopeptidase family protein | chr4:15046589-15049304 REVERSE LENGTH=583;; (*ITAG) Solyc12g010040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3180908-3187436 transcript_region:SL2.40ch12:3180908..3187436- go_terms:GO:0003779 functional_description:"Leucyl aminopeptidase (AHRD V1 ***- D7DWG6_NOSA0); contains Interpro domain(s) IPR011356 Peptidase M17, leucyl aminopeptidase IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal "; GO:0003779 NbS00024531g0002.1 protein AED:0.12 eAED:0.12 QI:1299|0.57|0.75|1|0.85|0.75|8|164|741; (*GB) gi|255577001|ref|XP_002529385.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1;; (*TAIR) AT5G57940.2 (e_value=0.0) | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated channel 5 | chr5:23457116-23460439 FORWARD LENGTH=717;; (*ITAG) Solyc12g010010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3144264-3150904 transcript_region:SL2.40ch12:3144264..3150904+ go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00024531g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|0|1|0|124; (*GB) gi|297821881|ref|XP_002878823.1| (e_value=8e-27) hypothetical protein ARALYDRAFT_481360 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=4e-28) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT2G25060.1 (e_value=3e-29) | Symbols: ENODL14, AtENODL14 | early nodulin-like protein 14 | chr2:10662308-10662930 FORWARD LENGTH=182;; (*ITAG) Solyc12g010000.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3137738-3138889 transcript_region:SL2.40ch12:3137738..3138889+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00057816g0001.1 protein AED:0.31 eAED:0.32 QI:0|0.75|0.2|1|1|1|5|0|293; (*GB) gi|350535372|ref|NP_001234703.1| (e_value=0.0) peptide deformylase 1A, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q9FUZ0|DEF1A_SOLLC (e_value=0.0) Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum GN=PDF1A PE=2 SV=1;; (*TAIR) AT1G15390.1 (e_value=7e-114) | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A | chr1:5294653-5295625 FORWARD LENGTH=269;; (*ITAG) Solyc07g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5626709-5629569 transcript_region:SL2.40ch07:5626709..5629569+ go_terms:GO:0042586 functional_description:"Peptide deformylase (AHRD V1 **** B9GKW9_POPTR); contains Interpro domain(s) IPR000181 Formylmethionine deformylase "; GO:0042586 NbS00017192g0001.1 protein AED:0.11 eAED:0.11 QI:569|0.71|0.75|1|1|1|8|288|303; (*GB) gi|356507258|ref|XP_003522386.1| (e_value=4e-118) PREDICTED: uncharacterized protein LOC100799543 [Glycine max];; (*TAIR) AT5G62960.1 (e_value=3e-106) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc06g071540.2.1 (e_value=1e-158) genomic_reference:SL2.40ch06 gene_region:40435464-40437509 transcript_region:SL2.40ch06:40435464..40437509+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00017192g0015.1 protein AED:0.26 eAED:0.31 QI:0|0.33|0.25|1|0|0.25|4|0|263; (*GB) gi|356513613|ref|XP_003525506.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100816653 [Glycine max];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=5e-21) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT4G18770.1 (e_value=4e-22) | Symbols: MYB98, AtMYB98 | myb domain protein 98 | chr4:10311068-10312557 FORWARD LENGTH=427;; (*ITAG) Solyc06g071520.1.1 (e_value=3e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40426984-40429093 transcript_region:SL2.40ch06:40426984..40429093+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00017192g0014.1 protein AED:0.34 eAED:0.34 QI:151|1|0.75|1|0.66|0.5|4|0|105; (*GB) gi|297737946|emb|CBI27147.3| (e_value=6e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96499|RL44_GOSHI (e_value=3e-59) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=9e-58) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00017192g0002.1 protein AED:0.37 eAED:0.69 QI:0|-1|0|1|-1|1|1|0|167; (*ITAG) Solyc06g071520.1.1 (e_value=4e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40426984-40429093 transcript_region:SL2.40ch06:40426984..40429093+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *-*- D7M9F3_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00037103g0006.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|1|1|2|0|127; (*GB) gi|38258219|sp|Q94G00.1|PIN1_MALDO (e_value=9e-68) RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1; Short=PPIase Pin1; AltName: Full=MdPin1; AltName: Full=Rotamase Pin1;; (*SWP) sp|Q94G00|PIN1_MALDO (e_value=3e-69) Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1;; (*TAIR) AT2G18040.1 (e_value=3e-65) | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 | chr2:7842346-7843537 FORWARD LENGTH=119;; (*ITAG) Solyc02g062250.2.1 (e_value=1e-70) genomic_reference:SL2.40ch02 gene_region:28434345-28439977 transcript_region:SL2.40ch02:28434345..28439977+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase C (AHRD V1 *--* PPIC_ECOLI); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0003755 NbS00031570g0001.1 protein AED:0.25 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|339; (*GB) gi|356554749|ref|XP_003545705.1| (e_value=9e-125) PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Glycine max];; (*SWP) sp|Q94B59|PP372_ARATH (e_value=3e-107) Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1;; (*TAIR) AT5G09450.1 (e_value=2e-108) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2941864-2943324 FORWARD LENGTH=409;; (*ITAG) Solyc10g047370.1.1 (e_value=1e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36110221-36114394 transcript_region:SL2.40ch10:36110221..36114394- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3C7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031570g0006.1 protein AED:0.43 eAED:0.55 QI:0|0|0|1|1|1|2|0|95; (*GB) gi|224141193|ref|XP_002323959.1| (e_value=9e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94B59|PP372_ARATH (e_value=7e-23) Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1;; (*TAIR) AT5G09450.1 (e_value=5e-24) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2941864-2943324 FORWARD LENGTH=409;; (*ITAG) Solyc10g047370.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36110221-36114394 transcript_region:SL2.40ch10:36110221..36114394- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3C7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025965g0001.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|0.5|1|1|4|0|434; (*GB) gi|302746499|gb|ADL62859.1| (e_value=1e-131) abscisic acid insensitive [Prunus armeniaca];; (*SWP) sp|Q9SJN0|ABI5_ARATH (e_value=2e-104) Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1;; (*TAIR) AT2G36270.1 (e_value=1e-105) | Symbols: ABI5, GIA1 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:15204980-15206571 REVERSE LENGTH=442;; (*ITAG) Solyc09g009490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2912187-2914306 transcript_region:SL2.40ch09:2912187..2914306- go_terms:GO:0016563 functional_description:"Bzip transcription factor (AHRD V1 *-** Q00M78_SOYBN); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563 NbS00041328g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|0.75|4|287|150; (*GB) gi|356534412|ref|XP_003535749.1| (e_value=4e-85) PREDICTED: proteasome subunit alpha type-5-like [Glycine max];; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=3e-86) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT1G53850.2 (e_value=9e-86) | Symbols: PAE1 | 20S proteasome alpha subunit E1 | chr1:20104131-20105792 REVERSE LENGTH=237;; (*ITAG) Solyc02g070510.2.1 (e_value=1e-87) genomic_reference:SL2.40ch02 gene_region:34815271-34822336 transcript_region:SL2.40ch02:34815271..34822336+ go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6TGU2_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00041328g0008.1 protein AED:0.29 eAED:0.30 QI:6|0.66|0.42|1|0.83|0.85|7|0|417; (*GB) gi|224082810|ref|XP_002306848.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91W34|CP058_MOUSE (e_value=2e-15) UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT2G31190.2 (e_value=0.0) | Symbols: RUS2 | Protein of unknown function, DUF647 | chr2:13291458-13293681 REVERSE LENGTH=432;; (*ITAG) Solyc05g026140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:39844008-39849166 transcript_region:SL2.40ch05:39844008..39849166+ functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00002578g0006.1 protein AED:0.27 eAED:0.29 QI:252|1|0.5|1|1|1|2|0|276; (*GB) gi|255553335|ref|XP_002517709.1| (e_value=4e-148) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=1e-145) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=9e-147) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=5e-178) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00002578g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|30013673|gb|AAP03879.1| (e_value=8e-42) Avr9/Cf-9 rapidly elicited protein 216 [Nicotiana tabacum];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=7e-27) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=5e-28) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=5e-85) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00002578g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.33|1|0.33|3|0|151; (*GB) gi|224126941|ref|XP_002319966.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7X996|CIPK2_ORYSJ (e_value=4e-69) CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1;; (*TAIR) AT5G07070.1 (e_value=6e-67) | Symbols: CIPK2, SnRK3.2 | CBL-interacting protein kinase 2 | chr5:2196743-2198113 REVERSE LENGTH=456;; (*ITAG) Solyc06g007430.1.1 (e_value=3e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1447079-1448515 transcript_region:SL2.40ch06:1447079..1448515+ go_terms:GO:0004711 functional_description:"CBL-interacting protein kinase 11 (AHRD V1 **** C4P7W0_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00034939g0010.1 protein AED:0.16 eAED:0.16 QI:283|1|1|1|0.93|0.93|16|194|666; (*GB) gi|193290710|gb|ACF17663.1| (e_value=0.0) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=0.0) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc08g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62279956-62289714 transcript_region:SL2.40ch08:62279956..62289714- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00034939g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.83|1|0.6|0.5|6|0|596; (*GB) gi|297742329|emb|CBI34478.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23840.1 (e_value=2e-150) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:12400379-12403190 FORWARD LENGTH=597;; (*ITAG) Solyc08g082270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62274283-62279603 transcript_region:SL2.40ch08:62274283..62279603+ go_terms:GO:0005515 functional_description:"Leucine-rich repeat domain protein (AHRD V1 **-- A6C938_9PLAN); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515 NbS00017335g0004.1 protein AED:0.07 eAED:0.08 QI:0|0.87|0.77|1|1|1|9|80|665; (*GB) gi|359486237|ref|XP_002264491.2| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G71530.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:26939766-26942306 FORWARD LENGTH=655;; (*ITAG) Solyc11g045610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:39047445-39052088 transcript_region:SL2.40ch11:39047445..39052088- go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00037343g0013.1 protein AED:0.10 eAED:0.10 QI:30|0.82|0.86|1|0.42|0.44|29|395|1410; (*GB) gi|302141822|emb|CBI19025.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A4L9P7|PDS5A_RAT (e_value=1e-49) Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1;; (*TAIR) AT1G77600.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:29152890-29162156 REVERSE LENGTH=1410;; (*ITAG) Solyc06g060380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34764560-34793492 transcript_region:SL2.40ch06:34764560..34793492+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 ***- PDS5A_RAT); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00037343g0008.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|138; (*GB) gi|222822695|gb|ACM68460.1| (e_value=2e-42) stress-associated protein 10 [Solanum pennellii];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=5e-36) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=4e-37) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=1e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00045408g0003.1 protein AED:0.18 eAED:0.18 QI:687|1|0.83|1|0.6|0.5|6|0|694; (*GB) gi|187940730|gb|ACD39466.1| (e_value=0.0) BEL29 protein [Solanum palustre];; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=7e-143) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=5e-144) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc01g007070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1602912-1606381 transcript_region:SL2.40ch01:1602912..1606381- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00050397g0008.1 protein AED:0.20 eAED:0.20 QI:551|0.9|0.90|1|0.6|0.54|11|554|202; (*GB) gi|296088791|emb|CBI38241.3| (e_value=2e-75) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G24200.2 (e_value=3e-63) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:8748095-8751166 REVERSE LENGTH=507;; (*ITAG) Solyc09g091570.2.1 (e_value=3e-94) genomic_reference:SL2.40ch09 gene_region:66169902-66176704 transcript_region:SL2.40ch09:66169902..66176704+ go_terms:GO:0042802,GO:0016491 functional_description:"Ubiquinone biosynthesis hydroxylase UbiH/UbiF/VisC/COQ6 family (AHRD V1 ***- D8KAW7_9GAMM); contains Interpro domain(s) IPR000689 Ubiquinone biosynthesis monooxygenase, COQ6-type "; GO:0042802,GO:0016491 NbS00033454g0006.1 protein AED:0.14 eAED:0.14 QI:312|0.33|0.3|0.9|0.22|0.3|10|0|1204; (*GB) gi|225425861|ref|XP_002266100.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244315 [Vitis vinifera];; (*TAIR) AT1G27850.1 (e_value=3e-141) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). | chr1:9699265-9703701 FORWARD LENGTH=1148;; (*ITAG) Solyc05g014640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8629401-8637373 transcript_region:SL2.40ch05:8629401..8637373- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00003482g0003.1 protein AED:0.23 eAED:0.23 QI:343|0.75|0.77|1|0.87|0.77|9|210|351; (*GB) gi|225454936|ref|XP_002277185.1| (e_value=3e-149) PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera];; (*SWP) sp|Q9BT17|MTG1_HUMAN (e_value=7e-27) Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2;; (*TAIR) AT4G10650.1 (e_value=4e-128) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:6574472-6576231 REVERSE LENGTH=377;; (*ITAG) Solyc12g099860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65169219-65173576 transcript_region:SL2.40ch12:65169219..65173576+ go_terms:GO:0005622 functional_description:"GTP-binding family protein (AHRD V1 ***- D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0005622 NbS00003482g0020.1 protein AED:0.34 eAED:0.34 QI:350|0.77|0.7|0.9|0.55|0.6|10|0|336; (*GB) gi|225454936|ref|XP_002277185.1| (e_value=1e-138) PREDICTED: ribosome biogenesis GTPase A [Vitis vinifera];; (*SWP) sp|A8FD69|RBGA_BACP2 (e_value=4e-27) Ribosome biogenesis GTPase A OS=Bacillus pumilus (strain SAFR-032) GN=rbgA PE=3 SV=1;; (*TAIR) AT4G10650.1 (e_value=3e-121) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:6574472-6576231 REVERSE LENGTH=377;; (*ITAG) Solyc12g099860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65169219-65173576 transcript_region:SL2.40ch12:65169219..65173576+ go_terms:GO:0005622 functional_description:"GTP-binding family protein (AHRD V1 ***- D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0005622 NbS00003482g0023.1 protein AED:0.06 eAED:0.15 QI:0|0|0|1|0|0.14|7|0|636; (*GB) gi|297745156|emb|CBI39148.3| (e_value=7e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=3e-13) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=2e-14) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g005480.2.1 (e_value=1e-62) genomic_reference:SL2.40ch09 gene_region:332487-334110 transcript_region:SL2.40ch09:332487..334110- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003482g0014.1 protein AED:0.16 eAED:0.18 QI:0|0|0|1|1|1|2|0|278; (*GB) gi|296089486|emb|CBI39305.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=3e-13) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=2e-14) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc11g012540.1.1 (e_value=3e-49) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009590g0204.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.25|1|1|4|0|209 NbS00009590g0203.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.2|0.8|1|1|5|0|517 NbS00009590g0209.1 protein AED:0.35 eAED:0.41 QI:0|0|0|1|0|0.33|3|0|179 NbS00009590g0206.1 protein AED:0.45 eAED:0.47 QI:0|0|0|0.75|1|1|4|0|190 NbS00009590g0208.1 protein AED:0.59 eAED:0.64 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|125 NbS00003651g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|147789754|emb|CAN67410.1| (e_value=3e-22) hypothetical protein VITISV_025621 [Vitis vinifera];; (*TAIR) AT5G06280.3 (e_value=5e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:1918379-1918849 REVERSE LENGTH=156;; (*ITAG) Solyc01g007770.2.1 (e_value=2e-74) genomic_reference:SL2.40ch01 gene_region:1927149-1927875 transcript_region:SL2.40ch01:1927149..1927875+ functional_description:"Genomic DNA chromosome 5 P1 clone MHF15 (AHRD V1 ***- Q9FNI0_ARATH)"; NbS00003651g0007.1 protein AED:0.20 eAED:0.22 QI:329|0.66|0.28|1|0.66|0.42|7|0|194; (*GB) gi|225440741|ref|XP_002281038.1| (e_value=3e-51) PREDICTED: HVA22-like protein j [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=1e-42) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.1 (e_value=1e-43) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015573-17016969 FORWARD LENGTH=296;; (*ITAG) Solyc10g082040.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62264261-62265744 transcript_region:SL2.40ch10:62264261..62265744- functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 **-- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00003651g0003.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|67 NbS00024430g0007.1 protein AED:0.38 eAED:0.38 QI:882|0.5|0.33|1|0.5|0.66|3|0|121; (*GB) gi|255581635|ref|XP_002531621.1| (e_value=6e-50) 50S ribosomal protein L15, putative [Ricinus communis];; (*SWP) sp|P25873|RK15_ARATH (e_value=5e-47) 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2;; (*TAIR) AT3G25920.1 (e_value=4e-48) | Symbols: RPL15 | ribosomal protein L15 | chr3:9491268-9492558 REVERSE LENGTH=277;; (*ITAG) Solyc05g009370.2.1 (e_value=6e-57) genomic_reference:SL2.40ch05 gene_region:3518447-3524365 transcript_region:SL2.40ch05:3518447..3524365- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 *-*- B4B3P1_9CHRO); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00024430g0002.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.75|1|1|4|0|101; (*GB) gi|255581635|ref|XP_002531621.1| (e_value=4e-44) 50S ribosomal protein L15, putative [Ricinus communis];; (*SWP) sp|P25873|RK15_ARATH (e_value=1e-41) 50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2;; (*TAIR) AT3G25920.1 (e_value=9e-43) | Symbols: RPL15 | ribosomal protein L15 | chr3:9491268-9492558 REVERSE LENGTH=277;; (*ITAG) Solyc05g009370.2.1 (e_value=6e-50) genomic_reference:SL2.40ch05 gene_region:3518447-3524365 transcript_region:SL2.40ch05:3518447..3524365- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 *-*- B4B3P1_9CHRO); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00026520g0006.1 protein AED:0.14 eAED:0.14 QI:478|1|1|1|0.72|0.58|12|308|728; (*GB) gi|359476988|ref|XP_002263237.2| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-179) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G10520.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr4:6499794-6502866 FORWARD LENGTH=756;; (*ITAG) Solyc02g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32840326-32844503 transcript_region:SL2.40ch02:32840326..32844503+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* C3VDI0_CARPA); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00026520g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|225431642|ref|XP_002263266.1| (e_value=2e-29) PREDICTED: uncharacterized protein LOC100241316 [Vitis vinifera];; (*TAIR) AT3G51500.1 (e_value=2e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19108353-19108703 FORWARD LENGTH=116;; (*ITAG) Solyc02g068290.1.1 (e_value=1e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32844801-32845202 transcript_region:SL2.40ch02:32844801..32845202- functional_description:"Unknown Protein (AHRD V1)"; NbS00042527g0008.1 protein AED:0.27 eAED:0.29 QI:197|0.77|0.73|1|0.77|0.84|19|181|910; (*GB) gi|225427356|ref|XP_002282657.1| (e_value=0.0) PREDICTED: lon protease homolog 2, peroxisomal [Vitis vinifera];; (*SWP) sp|O64948|LONP2_ARATH (e_value=0.0) Lon protease homolog 2, peroxisomal OS=Arabidopsis thaliana GN=LON2 PE=2 SV=1;; (*TAIR) AT5G47040.1 (e_value=0.0) | Symbols: LON2 | lon protease 2 | chr5:19093356-19098678 REVERSE LENGTH=888;; (*ITAG) Solyc08g077440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58492655-58502566 transcript_region:SL2.40ch08:58492655..58502566- go_terms:GO:0004176,GO:0070182 functional_description:"ATP-dependent protease La (AHRD V1 **** A7HC55_ANADF); contains Interpro domain(s) IPR004815 Peptidase S16, ATP-dependent protease La "; GO:0004176,GO:0070182 NbS00014063g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|113 NbS00025186g0004.1 protein AED:0.19 eAED:0.19 QI:146|0.8|0.83|1|1|1|6|531|398; (*GB) gi|166203413|gb|ABY84675.1| (e_value=0.0) multicopy suppressor of IRA1 [Nicotiana tabacum];; (*SWP) sp|O22466|MSI1_SOLLC (e_value=0.0) WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1;; (*TAIR) AT5G58230.1 (e_value=0.0) | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 repeat-like superfamily protein | chr5:23556112-23557994 FORWARD LENGTH=424;; (*ITAG) Solyc01g104510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84733582-84738514 transcript_region:SL2.40ch01:84733582..84738514- go_terms:GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042393 NbS00001129g0003.1 protein AED:0.55 eAED:0.80 QI:0|0.5|0|1|0.5|0.66|3|0|136; (*GB) gi|224122768|ref|XP_002330472.1| (e_value=3e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT5G63640.1 (e_value=1e-25) | Symbols: | ENTH/VHS/GAT family protein | chr5:25478935-25481221 FORWARD LENGTH=447;; (*ITAG) Solyc08g068370.2.1 (e_value=6e-15) genomic_reference:SL2.40ch08 gene_region:54667194-54678390 transcript_region:SL2.40ch08:54667194..54678390+ go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00019173g0009.1 protein AED:0.08 eAED:0.08 QI:341|1|1|1|1|1|4|360|375; (*GB) gi|4160300|emb|CAA09853.1| (e_value=0.0) cyclin D3.1 protein [Nicotiana tabacum];; (*SWP) sp|Q9FGQ7|CCD32_ARATH (e_value=5e-102) Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1;; (*TAIR) AT5G67260.1 (e_value=3e-103) | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836313-26837665 FORWARD LENGTH=367;; (*ITAG) Solyc01g107730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86939706-86941587 transcript_region:SL2.40ch01:86939706..86941587- go_terms:GO:0046982,GO:0005516 functional_description:"Cyclin (AHRD V1 ***- Q1XGF1_TOBAC); contains Interpro domain(s) IPR006671 Cyclin, N-terminal "; GO:0046982,GO:0005516 NbS00019173g0013.1 protein AED:0.11 eAED:0.24 QI:0|0.4|0.33|1|0.4|0.66|6|0|339; (*GB) gi|255555337|ref|XP_002518705.1| (e_value=3e-133) cysteine protease, putative [Ricinus communis];; (*SWP) sp|P25777|ORYB_ORYSJ (e_value=2e-119) Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2;; (*TAIR) AT5G43060.1 (e_value=8e-126) | Symbols: | Granulin repeat cysteine protease family protein | chr5:17269784-17272117 REVERSE LENGTH=463;; (*ITAG) Solyc01g107760.2.1 (e_value=9e-154) genomic_reference:SL2.40ch01 gene_region:86959457-86961934 transcript_region:SL2.40ch01:86959457..86961934- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00019173g0011.1 protein AED:0.32 eAED:0.32 QI:336|0.88|0.94|1|0.64|0.61|18|334|818; (*GB) gi|225428881|ref|XP_002285306.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246943 [Vitis vinifera];; (*SWP) sp|Q8T9S7|PTEN_DICDI (e_value=1e-50) Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1;; (*TAIR) AT3G19420.1 (e_value=0.0) | Symbols: ATPEN2, PEN2 | PTEN 2 | chr3:6731824-6735354 FORWARD LENGTH=611;; (*ITAG) Solyc01g107750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86949759-86958118 transcript_region:SL2.40ch01:86949759..86958118- go_terms:GO:0016311 functional_description:"Phosphatase and tensin-like A (AHRD V1 *--- C5IX04_APIME); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; GO:0016311 NbS00033831g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|224079910|ref|XP_002305969.1| (e_value=2e-95) hypothetical protein POPTRDRAFT_1076074 [Populus trichocarpa];; (*TAIR) AT5G15900.1 (e_value=2e-77) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089690.2.1 (e_value=1e-121) genomic_reference:SL2.40ch02 gene_region:46016378-46019118 transcript_region:SL2.40ch02:46016378..46019118+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00032645g0007.1 protein AED:0.38 eAED:0.75 QI:0|0|0|1|1|1|2|0|66 NbS00032645g0012.1 protein AED:0.23 eAED:0.23 QI:79|1|1|1|0.42|0.5|8|328|374; (*GB) gi|297746468|emb|CBI16524.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O05235|YUGF_BACSU (e_value=9e-17) Uncharacterized hydrolase yugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1;; (*TAIR) AT5G19850.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6709976-6711662 REVERSE LENGTH=359;; (*ITAG) Solyc12g098660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64432479-64436940 transcript_region:SL2.40ch12:64432479..64436940+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LZC3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00032645g0008.1 protein AED:0.27 eAED:0.27 QI:67|0.91|0.92|1|0.91|0.84|13|386|528; (*GB) gi|356527443|ref|XP_003532320.1| (e_value=0.0) PREDICTED: signal peptide peptidase-like 2B-like [Glycine max];; (*SWP) sp|Q5F383|SPP2B_CHICK (e_value=3e-57) Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1;; (*TAIR) AT1G05820.1 (e_value=0.0) | Symbols: SPPL5, ATSPPL5 | SIGNAL PEPTIDE PEPTIDASE-LIKE 5 | chr1:1749776-1753767 FORWARD LENGTH=536;; (*ITAG) Solyc12g098670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64437938-64445800 transcript_region:SL2.40ch12:64437938..64445800+ go_terms:GO:0016021 functional_description:"Signal peptide peptidase (AHRD V1 ***- Q9MA44_ARATH); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00037159g0003.1 protein AED:0.44 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|99; (*ITAG) Solyc11g068410.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00033511g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.72|0.66|0.83|0.90|0.83|12|171|535; (*GB) gi|359720702|gb|AEV54528.1| (e_value=0.0) aldehyde dehydrogenase ALDH2B4_V3 [Vitis vinifera];; (*SWP) sp|Q9SU63|AL2B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1;; (*TAIR) AT3G48000.1 (e_value=0.0) | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase 2B4 | chr3:17717082-17719843 REVERSE LENGTH=538;; (*ITAG) Solyc03g114150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58222807-58227323 transcript_region:SL2.40ch03:58222807..58227323+ go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** Q1AFF6_9ROSI); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00053503g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|111; (*GB) gi|78191426|gb|ABB29934.1| (e_value=4e-32) acidic ribosomal protein P1a-like [Solanum tuberosum];; (*SWP) sp|Q8LCW9|RLA11_ARATH (e_value=3e-25) 60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2;; (*TAIR) AT1G01100.4 (e_value=2e-26) | Symbols: | 60S acidic ribosomal protein family | chr1:50284-50954 REVERSE LENGTH=112;; (*ITAG) Solyc01g104370.2.1 (e_value=9e-34) genomic_reference:SL2.40ch01 gene_region:84525541-84526490 transcript_region:SL2.40ch01:84525541..84526490- go_terms:GO:0005515 functional_description:"60S acidic ribosomal protein P1 (AHRD V1 ***- B6T3C1_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005515 NbS00053503g0008.1 protein AED:0.11 eAED:0.11 QI:34|0.75|1|1|0.75|0.8|5|339|469; (*GB) gi|296084287|emb|CBI24675.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G37440.1 (e_value=8e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50040.1); Has 220 Blast hits to 205 proteins in 55 species: Archae - 0; Bacteria - 15; Metazoa - 50; Fungi - 11; Plants - 76; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink). | chr4:17601647-17603846 FORWARD LENGTH=471;; (*ITAG) Solyc01g104350.2.1 (e_value=2e-169) genomic_reference:SL2.40ch01 gene_region:84512955-84517727 transcript_region:SL2.40ch01:84512955..84517727+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008992g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|423; (*GB) gi|385843225|gb|AFI80906.1| (e_value=2e-116) putative transcription factor [Populus tomentosa];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=2e-81) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G09540.1 (e_value=8e-93) | Symbols: MYB61, ATMYB61 | myb domain protein 61 | chr1:3086333-3087689 FORWARD LENGTH=366;; (*ITAG) Solyc01g102340.2.1 (e_value=4e-179) genomic_reference:SL2.40ch01 gene_region:82925828-82927937 transcript_region:SL2.40ch01:82925828..82927937+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-like transcription factor (AHRD V1 *--- B8XPP3_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00057649g0004.1 protein AED:0.34 eAED:0.39 QI:0|0|0.33|1|1|1|3|0|213; (*GB) gi|356513323|ref|XP_003525363.1| (e_value=7e-63) PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-23) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=9e-25) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc03g114310.2.1 (e_value=1e-77) genomic_reference:SL2.40ch03 gene_region:58374824-58379605 transcript_region:SL2.40ch03:58374824..58379605+ go_terms:GO:0004715 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 **** PTK6_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004715 NbS00008377g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|5257560|gb|AAD41409.1|AF159562_1 (e_value=4e-65) cytosolic class II low molecular weight heat shock protein [Prunus dulcis];; (*SWP) sp|Q01545|HSP22_IPONI (e_value=2e-61) 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=4e-53) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062340.2.1 (e_value=1e-59) genomic_reference:SL2.40ch08 gene_region:48122173-48122945 transcript_region:SL2.40ch08:48122173..48122945- go_terms:GO:0051082 functional_description:"Class II small heat shock protein Le-HSP17.6 (AHRD V1 ***- Q96489_SOLLC); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00003826g0005.1 protein AED:0.03 eAED:0.03 QI:80|0.87|0.88|1|0.87|0.88|9|279|511; (*GB) gi|1345684|sp|P49317.1|CATA3_NICPL (e_value=0.0) RecName: Full=Catalase isozyme 3;; (*SWP) sp|P49317|CATA3_NICPL (e_value=0.0) Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN=CAT3 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc04g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63696861-63701335 transcript_region:SL2.40ch04:63696861..63701335+ go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** Q8L7J7_CAPAN); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00009487g0013.1 protein AED:0.19 eAED:0.19 QI:0|1|0.91|1|1|1|12|274|755; (*GB) gi|225451860|ref|XP_002278556.1| (e_value=0.0) PREDICTED: kanadaptin-like [Vitis vinifera];; (*SWP) sp|Q9BWU0|NADAP_HUMAN (e_value=5e-36) Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1;; (*TAIR) AT5G38840.1 (e_value=0.0) | Symbols: | SMAD/FHA domain-containing protein | chr5:15551329-15554846 FORWARD LENGTH=735;; (*ITAG) Solyc02g089360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45779148-45786379 transcript_region:SL2.40ch02:45779148..45786379- functional_description:"Nuclear inhibitor of protein phosphatase 1 (AHRD V1 *--- Q9V7W9_DROME); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00009487g0014.1 protein AED:0.25 eAED:0.51 QI:54|0.33|0.25|0.75|0.33|0.5|4|425|143; (*ITAG) Solyc09g083230.1.1 (e_value=8e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64287968-64289113 transcript_region:SL2.40ch09:64287968..64289113+ functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009487g0019.1 protein AED:0.18 eAED:0.18 QI:595|0.94|0.88|1|0.82|0.88|18|0|545; (*GB) gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY (e_value=0.0) RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; AltName: Full=NsRpoT-B; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2; Flags: Precursor;; (*SWP) sp|Q8VWF8|RPOT2_NICSY (e_value=0.0) DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2;; (*TAIR) AT5G15700.1 (e_value=0.0) | Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115793-5121609 REVERSE LENGTH=1011;; (*ITAG) Solyc02g089340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45764837-45773159 transcript_region:SL2.40ch02:45764837..45773159+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9G2A5_ORYSJ); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00009487g0018.1 protein AED:0.21 eAED:0.21 QI:173|0.5|1|1|0.5|0.66|3|329|136 NbS00009487g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|236; (*GB) gi|88933966|sp|Q8L6J3.2|RPO2B_TOBAC (e_value=1e-104) RecName: Full=DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial; AltName: Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2B; Flags: Precursor;; (*SWP) sp|Q8L6J3|RPO2B_TOBAC (e_value=3e-106) DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2;; (*TAIR) AT5G15700.2 (e_value=3e-58) | Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115572-5121609 REVERSE LENGTH=1051;; (*ITAG) Solyc02g089330.2.1 (e_value=1e-92) genomic_reference:SL2.40ch02 gene_region:45762800-45764795 transcript_region:SL2.40ch02:45762800..45764795+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q52GZ4_SPIOL); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0006350 NbS00014350g0004.1 protein AED:0.27 eAED:0.42 QI:0|0|0.25|1|0.33|0.5|4|0|185; (*ITAG) Solyc01g073870.2.1 (e_value=3e-25) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00014350g0003.1 protein AED:0.63 eAED:0.63 QI:57|0.5|0.33|0.66|0|0.33|3|0|55 NbS00048856g0002.1 protein AED:0.45 eAED:0.67 QI:0|0|0|1|1|1|3|0|115 NbS00012652g0007.1 protein AED:0.23 eAED:0.23 QI:373|0.66|0.68|0.89|0.5|0.57|19|306|628; (*GB) gi|356512163|ref|XP_003524790.1| (e_value=0.0) PREDICTED: CAS1 domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q96PB1|CASD1_HUMAN (e_value=7e-38) CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1;; (*TAIR) AT1G29890.2 (e_value=0.0) | Symbols: | O-acetyltransferase family protein | chr1:10463532-10467153 FORWARD LENGTH=584;; (*ITAG) Solyc02g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35176956-35184955 transcript_region:SL2.40ch02:35176956..35184955+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00024093g0013.1 protein AED:0.08 eAED:0.10 QI:9|0.5|0.28|1|0.5|0.57|7|0|366; (*GB) gi|10185719|gb|AAG14416.1|AF248538_1 (e_value=0.0) NTS1 protein [Nicotiana tabacum];; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=9e-80) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT1G02790.1 (e_value=1e-75) | Symbols: PGA4 | polygalacturonase 4 | chr1:610681-612225 REVERSE LENGTH=422;; (*ITAG) Solyc06g009200.2.1 (e_value=2e-175) genomic_reference:SL2.40ch06 gene_region:3145403-3148220 transcript_region:SL2.40ch06:3145403..3148220+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00024093g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|1|0.75|0.6|5|405|236; (*GB) gi|83284003|gb|ABC01909.1| (e_value=8e-115) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=1e-107) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=1e-108) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=7e-119) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00024093g0008.1 protein AED:0.13 eAED:0.13 QI:45|1|1|1|0.66|0.5|4|418|559; (*GB) gi|359479995|ref|XP_002271665.2| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Vitis vinifera];; (*SWP) sp|O81301|PME40_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1;; (*TAIR) AT4G02320.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518;; (*ITAG) Solyc06g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008144g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|297; (*GB) gi|225469257|ref|XP_002265575.1| (e_value=6e-72) PREDICTED: uncharacterized protein LOC100250319 [Vitis vinifera];; (*TAIR) AT3G07350.1 (e_value=5e-57) | Symbols: | Protein of unknown function (DUF506) | chr3:2347674-2348570 FORWARD LENGTH=298;; (*ITAG) Solyc06g007580.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1578789-1579688 transcript_region:SL2.40ch06:1578789..1579688+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00008144g0006.1 protein AED:0.24 eAED:0.24 QI:124|1|0.6|1|1|1|5|0|254; (*GB) gi|192913018|gb|ACF06617.1| (e_value=9e-99) 40S ribosomal protein S8 [Elaeis guineensis];; (*SWP) sp|P49199|RS8_ORYSJ (e_value=8e-99) 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=4e-94) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=6e-103) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00027282g0011.1 protein AED:0.33 eAED:0.33 QI:0|1|0|1|1|1|2|0|403; (*GB) gi|224053453|ref|XP_002297823.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=0.0) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc09g091400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66031095-66035023 transcript_region:SL2.40ch09:66031095..66035023- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00027282g0010.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|2|0|775; (*GB) gi|255554216|ref|XP_002518148.1| (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=0.0) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc09g091400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66031095-66035023 transcript_region:SL2.40ch09:66031095..66035023- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023460g0007.1 protein AED:0.29 eAED:0.34 QI:124|0.44|0.6|0.9|0.44|0.4|10|98|339; (*GB) gi|225470420|ref|XP_002273964.1| (e_value=3e-38) PREDICTED: protein LOL2 [Vitis vinifera];; (*SWP) sp|Q704V3|LOL5_ORYSJ (e_value=1e-26) Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1;; (*TAIR) AT4G21610.1 (e_value=1e-27) | Symbols: LOL2 | lsd one like 2 | chr4:11489069-11490300 FORWARD LENGTH=155;; (*ITAG) Solyc02g078270.2.1 (e_value=2e-67) genomic_reference:SL2.40ch02 gene_region:37592120-37597984 transcript_region:SL2.40ch02:37592120..37597984+ functional_description:"Zinc finger protein LSD1 (AHRD V1 *--- Q6QUK7_ORYSJ); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; NbS00023460g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|1|0.33|3|0|194; (*GB) gi|224132652|ref|XP_002321375.1| (e_value=5e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|A2Z3C4|6PGL4_ORYSI (e_value=2e-76) Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_031067 PE=3 SV=2;; (*TAIR) AT5G24400.1 (e_value=3e-71) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc07g066270.2.1 (e_value=5e-98) genomic_reference:SL2.40ch07 gene_region:64973786-64976784 transcript_region:SL2.40ch07:64973786..64976784- go_terms:GO:0017057 functional_description:"Glucosamine-6-phosphate deaminase (AHRD V1 ***- NAGB_ACHLI); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00018888g0009.1 protein AED:0.30 eAED:0.30 QI:220|1|0.91|1|0.63|0.66|12|483|267; (*GB) gi|218744536|dbj|BAH03477.1| (e_value=9e-162) secretory carrier-associated membrane protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9C6X2|SCAM4_ARATH (e_value=1e-132) Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1;; (*TAIR) AT1G32050.1 (e_value=7e-134) | Symbols: | SCAMP family protein | chr1:11528616-11530974 FORWARD LENGTH=264;; (*ITAG) Solyc08g076210.2.1 (e_value=2e-163) genomic_reference:SL2.40ch08 gene_region:57395919-57403348 transcript_region:SL2.40ch08:57395919..57403348+ go_terms:GO:0019904 functional_description:"Secretory carrier-associated membrane protein 2 (AHRD V1 ***- B7X6S6_TOBAC); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00018888g0008.1 protein AED:0.42 eAED:0.47 QI:0|0.87|0.77|1|0.62|0.88|9|39|206; (*GB) gi|218744536|dbj|BAH03477.1| (e_value=1e-117) secretory carrier-associated membrane protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9C6X2|SCAM4_ARATH (e_value=3e-92) Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1;; (*TAIR) AT1G32050.1 (e_value=2e-93) | Symbols: | SCAMP family protein | chr1:11528616-11530974 FORWARD LENGTH=264;; (*ITAG) Solyc08g076210.2.1 (e_value=2e-119) genomic_reference:SL2.40ch08 gene_region:57395919-57403348 transcript_region:SL2.40ch08:57395919..57403348+ go_terms:GO:0019904 functional_description:"Secretory carrier-associated membrane protein 2 (AHRD V1 ***- B7X6S6_TOBAC); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00018888g0101.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|1186|330 NbS00018888g0104.1 protein AED:0.55 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|147 NbS00018888g0112.1 protein AED:0.87 eAED:0.94 QI:0|0|0|0.66|0|0|3|0|164 NbS00038786g0002.1 protein AED:0.22 eAED:0.22 QI:290|1|1|1|0.89|0.85|20|385|1023; (*GB) gi|359474892|ref|XP_002276432.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0WLC6|PP349_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2;; (*TAIR) AT4G34830.1 (e_value=0.0) | Symbols: MRL1 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16599976-16605994 REVERSE LENGTH=1089;; (*ITAG) Solyc01g111020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89187941-89202033 transcript_region:SL2.40ch01:89187941..89202033- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038786g0009.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|20149046|gb|AAM12778.1| (e_value=2e-37) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=8e-26) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=7e-29) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110940.2.1 (e_value=5e-41) genomic_reference:SL2.40ch01 gene_region:89164789-89165620 transcript_region:SL2.40ch01:89164789..89165620+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00038786g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=1e-49) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=6e-36) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=4e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110940.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:89164789-89165620 transcript_region:SL2.40ch01:89164789..89165620+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00038786g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=9e-45) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=4e-36) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=1e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110920.2.1 (e_value=3e-53) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00038786g0016.1 protein AED:0.10 eAED:0.21 QI:51|0|0|1|0|0|3|0|216; (*GB) gi|309385615|gb|ADO66675.1| (e_value=3e-79) X intrinsic protein [Nicotiana sylvestris];; (*ITAG) Solyc01g111010.2.1 (e_value=8e-92) genomic_reference:SL2.40ch01 gene_region:89184158-89188515 transcript_region:SL2.40ch01:89184158..89188515+ go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 *-*- Q40266_MESCR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0016020 NbS00041871g0005.1 protein AED:0.31 eAED:0.31 QI:395|1|0.83|1|0.6|0.5|6|0|281; (*GB) gi|356525876|ref|XP_003531547.1| (e_value=7e-162) PREDICTED: probable protein phosphatase 2C 10-like [Glycine max];; (*SWP) sp|Q9S9Z7|P2C10_ARATH (e_value=8e-148) Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1;; (*TAIR) AT1G34750.1 (e_value=6e-149) | Symbols: | Protein phosphatase 2C family protein | chr1:12736386-12737727 REVERSE LENGTH=282;; (*ITAG) Solyc10g047290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35843120-35848085 transcript_region:SL2.40ch10:35843120..35848085+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00041871g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.33|1|0.5|0.33|3|318|124; (*GB) gi|169264928|dbj|BAG12304.1| (e_value=2e-35) 6b-interacting protein 2 [Nicotiana tabacum]; NbS00041871g0006.1 protein AED:0.36 eAED:0.53 QI:20|0.25|0|1|0.25|0.2|5|0|179; (*GB) gi|169264928|dbj|BAG12304.1| (e_value=4e-69) 6b-interacting protein 2 [Nicotiana tabacum]; NbS00024345g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|141; (*GB) gi|133711801|gb|ABO36619.1| (e_value=3e-36) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*TAIR) AT3G50180.1 (e_value=6e-15) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18604943-18607162 REVERSE LENGTH=588;; (*ITAG) Solyc10g079230.1.1 (e_value=5e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00030096g0008.1 protein AED:0.06 eAED:0.06 QI:71|0.66|0.5|1|0.33|0.5|4|217|313; (*GB) gi|225440256|ref|XP_002283980.1| (e_value=7e-83) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera];; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=2e-55) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT1G68070.1 (e_value=4e-61) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:25515412-25516767 REVERSE LENGTH=343;; (*ITAG) Solyc10g081110.1.1 (e_value=4e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61576840-61581704 transcript_region:SL2.40ch10:61576840..61581704- go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030096g0003.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|1|1|2|0|120; (*ITAG) Solyc10g081100.1.1 (e_value=2e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61573572-61575473 transcript_region:SL2.40ch10:61573572..61575473+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038001g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.85|0.87|1|0.57|0.37|8|400|570; (*GB) gi|21105746|gb|AAM34772.1|AF509872_1 (e_value=0.0) nam-like protein 9 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=3e-127) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G10500.1 (e_value=5e-131) | Symbols: anac053, NAC053 | NAC domain containing protein 53 | chr3:3271718-3273887 FORWARD LENGTH=549;; (*ITAG) Solyc05g055470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64249833-64254800 transcript_region:SL2.40ch05:64249833..64254800- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- A9PB02_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00038001g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|199 NbS00038001g0006.1 protein AED:0.22 eAED:0.22 QI:196|0.75|0.77|1|0.75|0.66|9|304|346; (*GB) gi|359486525|ref|XP_002264331.2| (e_value=1e-116) PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera];; (*SWP) sp|P57723|PCBP4_HUMAN (e_value=7e-14) Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1;; (*TAIR) AT5G04430.1 (e_value=7e-106) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc05g055450.2.1 (e_value=1e-166) genomic_reference:SL2.40ch05 gene_region:64240601-64247033 transcript_region:SL2.40ch05:64240601..64247033+ go_terms:GO:0003727 functional_description:"PolyrC-binding protein 2 (AHRD V1 **** B5X4N2_SALSA); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003727 NbS00034954g0006.1 protein AED:0.09 eAED:0.06 QI:1057|0.88|0.7|1|0.77|0.7|10|306|661; (*GB) gi|350536663|ref|NP_001234258.1| (e_value=0.0) potassium channel [Solanum lycopersicum];; (*SWP) sp|Q38998|AKT1_ARATH (e_value=0.0) Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2;; (*TAIR) AT2G26650.1 (e_value=0.0) | Symbols: AKT1, ATAKT1, KT1 | K+ transporter 1 | chr2:11331965-11336444 REVERSE LENGTH=857;; (*ITAG) Solyc12g006850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1258370-1264932 transcript_region:SL2.40ch12:1258370..1264932- go_terms:GO:0016020 functional_description:"Potassium channel (AHRD V1 ***- Q9LEG6_SOLLC); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016020 NbS00041607g0002.1 protein AED:0.42 eAED:0.43 QI:0|0|0|0.33|1|1|6|0|348; (*GB) gi|225438355|ref|XP_002273487.1| (e_value=1e-98) PREDICTED: uncharacterized protein LOC100243998 [Vitis vinifera];; (*TAIR) AT5G08750.2 (e_value=3e-88) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:2853066-2854343 FORWARD LENGTH=363; NbS00057258g0006.1 protein AED:0.25 eAED:0.26 QI:197|0.83|0.85|1|1|1|7|412|224; (*GB) gi|224136812|ref|XP_002326951.1| (e_value=9e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VY63|MPU12_ARATH (e_value=2e-116) Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana GN=At4g07390 PE=2 SV=1;; (*TAIR) AT4G07390.1 (e_value=2e-117) | Symbols: | Mannose-P-dolichol utilization defect 1 protein | chr4:4195750-4197317 FORWARD LENGTH=235;; (*ITAG) Solyc12g088660.1.1 (e_value=1e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62379483-62384655 transcript_region:SL2.40ch12:62379483..62384655- functional_description:"Mannose-P-dolichol utilization defect 1 protein (AHRD V1 ***- B6TBT4_MAIZE); contains Interpro domain(s) IPR016817 Mannose-P-dolichol utilization defect 1 protein "; NbS00001317g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.57|1|1|1|7|326|817; (*GB) gi|224068624|ref|XP_002302785.1| (e_value=5e-107) predicted protein [Populus trichocarpa];; (*TAIR) AT1G26540.1 (e_value=1e-50) | Symbols: | Agenet domain-containing protein | chr1:9167783-9170795 REVERSE LENGTH=695;; (*ITAG) Solyc01g079230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70832208-70839060 transcript_region:SL2.40ch01:70832208..70839060+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KQP5_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00005342g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|485; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=1e-75) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=3e-31) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083050.1.1 (e_value=8e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41193246-41194061 transcript_region:SL2.40ch02:41193246..41194061+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00021903g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|787; (*GB) gi|359482448|ref|XP_003632775.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14240.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:4741637-4743964 REVERSE LENGTH=775;; (*ITAG) Solyc03g123490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64371869-64374217 transcript_region:SL2.40ch03:64371869..64374217+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00021903g0019.1 protein AED:0.20 eAED:0.25 QI:0|1|0|1|0|0|2|0|143; (*GB) gi|255586772|ref|XP_002534004.1| (e_value=2e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G53903.1 (e_value=9e-22) | Symbols: | Protein of unknown function (DUF581) | chr1:20132363-20132842 FORWARD LENGTH=126;; (*ITAG) Solyc03g123460.2.1 (e_value=7e-63) genomic_reference:SL2.40ch03 gene_region:64358120-64359366 transcript_region:SL2.40ch03:64358120..64359366+ functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *--- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00021903g0010.1 protein AED:0.37 eAED:0.37 QI:760|0.5|1|1|0|0.33|3|447|127 NbS00021903g0020.1 protein AED:0.27 eAED:0.49 QI:0|0|0|0.66|0.5|0.66|3|0|137; (*GB) gi|242096256|ref|XP_002438618.1| (e_value=1e-46) hypothetical protein SORBIDRAFT_10g022910 [Sorghum bicolor];; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=1e-44) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT1G34110.1 (e_value=8e-46) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:12417331-12421246 REVERSE LENGTH=1072;; (*ITAG) Solyc12g056730.1.1 (e_value=5e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48170555-48174218 transcript_region:SL2.40ch12:48170555..48174218+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00021903g0014.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|68 NbS00021903g0008.1 protein AED:0.38 eAED:0.75 QI:0|0|0|0.75|1|1|4|0|152 NbS00021903g0021.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|259191129|gb|ACW03687.1| (e_value=4e-63) RNA polymerase beta subunit [Hydrangea macrophylla];; (*SWP) sp|A7Y3B6|RPOC1_IPOPU (e_value=1e-59) DNA-directed RNA polymerase subunit beta' OS=Ipomoea purpurea GN=rpoC1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=3e-58) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc08g028950.1.1 (e_value=9e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:21745068-21745779 transcript_region:SL2.40ch08:21745068..21745779- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta' (AHRD V1 ***- RPOC1_TOBAC); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0006350 NbS00021903g0016.1 protein AED:0.31 eAED:0.43 QI:0|0|0|1|0|0|2|0|132; (*GB) gi|53749448|gb|AAU90304.1| (e_value=4e-17) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc01g058430.1.1 (e_value=7e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:59357955-59361469 transcript_region:SL2.40ch01:59357955..59361469+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SKM2_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00021903g0013.1 protein AED:0.25 eAED:0.28 QI:0|0|0|1|0|0|2|0|84; (*ITAG) Solyc03g093100.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00021903g0015.1 protein AED:0.33 eAED:1.00 QI:36|0|0|1|0|0|3|501|18 NbS00014106g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225431988|ref|XP_002279066.1| (e_value=4e-45) PREDICTED: calmodulin-like [Vitis vinifera];; (*TAIR) AT5G49480.1 (e_value=2e-39) | Symbols: ATCP1, CP1 | Ca2+-binding protein 1 | chr5:20070812-20071294 FORWARD LENGTH=160;; (*ITAG) Solyc01g058720.2.1 (e_value=6e-59) genomic_reference:SL2.40ch01 gene_region:60821655-60822485 transcript_region:SL2.40ch01:60821655..60822485- go_terms:GO:0005509 functional_description:"NaCl-inducible Ca2+-binding protein (AHRD V1 **-* O22368_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011862g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|113 NbS00001966g0007.1 protein AED:0.35 eAED:0.37 QI:79|0.66|0.69|1|0.58|0.53|13|201|711; (*GB) gi|359489616|ref|XP_002267348.2| (e_value=8e-135) PREDICTED: (+)-neomenthol dehydrogenase-like [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=2e-131) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=2e-132) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094220.2.1 (e_value=5e-171) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00024975g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.88|1|1|1|9|369|479; (*GB) gi|225448217|ref|XP_002269498.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 3 [Vitis vinifera];; (*SWP) sp|Q9ET30|TM9S3_MOUSE (e_value=4e-154) Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1;; (*TAIR) AT1G10950.1 (e_value=0.0) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc01g103930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84168402-84175175 transcript_region:SL2.40ch01:84168402..84175175- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00006896g0004.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|142; (*ITAG) Solyc05g017840.2.1 (e_value=7e-19) genomic_reference:SL2.40ch05 gene_region:18466904-18469886 transcript_region:SL2.40ch05:18466904..18469886+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018248g0005.1 protein AED:0.19 eAED:0.19 QI:39|0.7|0.72|1|0.7|0.63|11|261|326; (*GB) gi|350535142|ref|NP_001234434.1| (e_value=0.0) gamma-glutamylhydrolase 1 precursor [Solanum lycopersicum];; (*SWP) sp|O65355|GGH_ARATH (e_value=1e-131) Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2;; (*TAIR) AT1G78680.1 (e_value=8e-133) | Symbols: ATGGH2, GGH2 | gamma-glutamyl hydrolase 2 | chr1:29593933-29596037 FORWARD LENGTH=347;; (*ITAG) Solyc07g062270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62274440-62278661 transcript_region:SL2.40ch07:62274440..62278661+ go_terms:GO:0034722 functional_description:"Gamma-glutamyl hydrolase 2 (AHRD V1 **** D7MX15_ARALY); contains Interpro domain(s) IPR015527 Peptidase C26, gamma-glutamyl hydrolase "; GO:0034722 NbS00016500g0005.1 protein AED:0.13 eAED:0.13 QI:443|1|1|1|0|0|3|338|37 NbS00016500g0006.1 protein AED:0.40 eAED:0.63 QI:47|0|0.25|1|0|0.25|4|410|25 NbS00027278g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.9|0.90|1|0.9|0.81|11|661|748; (*GB) gi|296083782|emb|CBI23999.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SJA1|UBP19_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana GN=UBP19 PE=2 SV=2;; (*TAIR) AT2G24640.1 (e_value=0.0) | Symbols: UBP19 | ubiquitin-specific protease 19 | chr2:10475613-10479341 REVERSE LENGTH=672;; (*ITAG) Solyc08g069050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55337003-55346093 transcript_region:SL2.40ch08:55337003..55346093- go_terms:GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7LIB1_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004197 NbS00027278g0007.1 protein AED:0.14 eAED:0.14 QI:203|0.75|0.8|1|0.5|0.4|5|623|168; (*GB) gi|359806759|ref|NP_001241556.1| (e_value=4e-63) uncharacterized protein LOC100793327 precursor [Glycine max];; (*SWP) sp|Q96518|PER16_ARATH (e_value=1e-59) Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2;; (*TAIR) AT2G18980.1 (e_value=9e-61) | Symbols: | Peroxidase superfamily protein | chr2:8233419-8235294 REVERSE LENGTH=323;; (*ITAG) Solyc08g069040.2.1 (e_value=3e-81) genomic_reference:SL2.40ch08 gene_region:55334671-55336365 transcript_region:SL2.40ch08:55334671..55336365+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** Q84UA9_ARTAN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00014627g0004.1 protein AED:0.06 eAED:0.06 QI:58|0|0.66|0.66|0|0|3|216|260; (*GB) gi|255578926|ref|XP_002530316.1| (e_value=2e-73) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT3G14250.1 (e_value=4e-48) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc01g110100.2.1 (e_value=9e-114) genomic_reference:SL2.40ch01 gene_region:88644859-88648051 transcript_region:SL2.40ch01:88644859..88648051+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00014627g0005.1 protein AED:0.18 eAED:0.18 QI:0|1|0.8|1|1|1|5|0|370; (*GB) gi|223049408|gb|ACM80348.1| (e_value=0.0) cysteine proteinase [Solanum lycopersicum];; (*SWP) sp|P43296|RD19A_ARATH (e_value=0.0) Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1;; (*TAIR) AT4G39090.1 (e_value=0.0) | Symbols: RD19, RD19A | Papain family cysteine protease | chr4:18215826-18217326 REVERSE LENGTH=368;; (*ITAG) Solyc01g110110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88650256-88653173 transcript_region:SL2.40ch01:88650256..88653173+ go_terms:GO:0004197 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-* D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00014627g0006.1 protein AED:0.47 eAED:0.57 QI:24|0|0|1|0|0.5|2|0|40 NbS00014627g0011.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|0|0|2|0|77 NbS00048350g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|242; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=1e-140) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-31) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G17700.1 (e_value=8e-85) | Symbols: | MATE efflux family protein | chr5:5831025-5833415 REVERSE LENGTH=497;; (*ITAG) Solyc10g081260.1.1 (e_value=4e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00048350g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|369; (*GB) gi|255544618|ref|XP_002513370.1| (e_value=5e-154) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G79220.1 (e_value=1e-122) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29799227-29800426 FORWARD LENGTH=399;; (*ITAG) Solyc02g067960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32612872-32614011 transcript_region:SL2.40ch02:32612872..32614011- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7KVZ3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00009537g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.33|1|0.6|0.5|6|257|695; (*GB) gi|297738216|emb|CBI27417.3| (e_value=4e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8MQR0|WIT2_ARATH (e_value=3e-92) WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1;; (*TAIR) AT1G68910.1 (e_value=2e-93) | Symbols: WIT2 | WPP domain-interacting protein 2 | chr1:25908234-25910485 REVERSE LENGTH=627;; (*ITAG) Solyc05g010590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4826860-4832345 transcript_region:SL2.40ch05:4826860..4832345- go_terms:GO:0042802 functional_description:"WPP domain-interacting tail-anchored protein 2 (AHRD V1 ***- WIT2_ARATH)"; GO:0042802 NbS00009537g0006.1 protein AED:0.66 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|180 NbS00003225g0006.1 protein AED:0.24 eAED:0.34 QI:49|0|0|0.66|0|0|3|0|118; (*GB) gi|57013893|ref|YP_173367.1| (e_value=5e-53) ribosomal protein S14 [Nicotiana tabacum];; (*SWP) sp|P14875|RT14_OENBE (e_value=8e-16) Ribosomal protein S14, mitochondrial OS=Oenothera berteriana GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=1e-13) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc09g050030.1.1 (e_value=5e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152232-32152420 transcript_region:SL2.40ch09:32152232..32152420- go_terms:GO:0005840 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A8TZK0_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0005840 NbS00023579g0005.1 protein AED:0.25 eAED:0.25 QI:170|1|1|1|1|1|3|352|140; (*GB) gi|356505124|ref|XP_003521342.1| (e_value=5e-47) PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Glycine max];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=2e-16) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G37510.1 (e_value=7e-41) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15743112-15744504 REVERSE LENGTH=142;; (*ITAG) Solyc10g084630.1.1 (e_value=8e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63403554-63405919 transcript_region:SL2.40ch10:63403554..63405919- go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 ***- B6TNV4_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00023579g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|187; (*GB) gi|225439882|ref|XP_002278904.1| (e_value=1e-52) PREDICTED: uncharacterized protein LOC100253357 [Vitis vinifera];; (*TAIR) AT3G53630.1 (e_value=2e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G18692.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19883986-19885568 FORWARD LENGTH=194;; (*ITAG) Solyc10g084620.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63400608-63402843 transcript_region:SL2.40ch10:63400608..63402843+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027056g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0|1|0|0|4|0|142; (*GB) gi|211906440|gb|ACJ11713.1| (e_value=3e-46) UDP-L-rhamnose synthase [Gossypium hirsutum];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=7e-38) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G63000.1 (e_value=3e-45) | Symbols: NRS/ER, UER1 | nucleotide-rhamnose synthase/epimerase-reductase | chr1:23342510-23343859 FORWARD LENGTH=301;; (*ITAG) Solyc08g080140.2.1 (e_value=5e-51) genomic_reference:SL2.40ch08 gene_region:60644754-60646888 transcript_region:SL2.40ch08:60644754..60646888+ go_terms:GO:0044237,GO:0008152 functional_description:"dTDP-4-dehydrorhamnose reductase (AHRD V1 **-- B6STR1_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00000267g0008.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0.42|1|0.16|0.42|7|729|429; (*GB) gi|318068176|gb|ADV36922.1| (e_value=0.0) gamma-tocopherol methyltransferase [Solanum tuberosum];; (*SWP) sp|Q6ZIK0|GTOMC_ORYSJ (e_value=3e-135) Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1;; (*TAIR) AT1G64970.1 (e_value=1e-132) | Symbols: G-TMT, TMT1, VTE4 | gamma-tocopherol methyltransferase | chr1:24134337-24135993 REVERSE LENGTH=348;; (*ITAG) Solyc08g076360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57497311-57501540 transcript_region:SL2.40ch08:57497311..57501540- go_terms:GO:0050342 functional_description:"Gamma-tocopherol methyltransferase (AHRD V1 **** Q1PBH9_SOLLC); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0050342 NbS00008651g0006.1 protein AED:0.23 eAED:0.23 QI:454|0.85|0.85|1|0.85|0.77|35|268|2164; (*GB) gi|38490651|gb|AAQ55288.2| (e_value=0.0) phytocalpain [Nicotiana benthamiana];; (*SWP) sp|Q11002|CANA_DROME (e_value=3e-56) Calpain-A OS=Drosophila melanogaster GN=CalpA PE=1 SV=2;; (*TAIR) AT1G55350.4 (e_value=0.0) | Symbols: DEK1, ATDEK1 | calpain-type cysteine protease family | chr1:20654463-20664501 REVERSE LENGTH=2151;; (*ITAG) Solyc12g100360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65458539-65483576 transcript_region:SL2.40ch12:65458539..65483576+ go_terms:GO:0006508,GO:0005622 functional_description:"Calpain-like protein (AHRD V1 ***- Q8RVL2_ARATH); contains Interpro domain(s) IPR001300 Peptidase C2, calpain "; GO:0006508,GO:0005622 NbS00014184g0008.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0|2|0|307; (*GB) gi|224075052|ref|XP_002304537.1| (e_value=1e-106) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=7e-84) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.2 (e_value=1e-85) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16640859 REVERSE LENGTH=742;; (*ITAG) Solyc02g071070.2.1 (e_value=1e-145) genomic_reference:SL2.40ch02 gene_region:35142603-35146386 transcript_region:SL2.40ch02:35142603..35146386+ go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00014184g0006.1 protein AED:0.34 eAED:0.37 QI:0|0|0|1|0|0|2|0|282; (*GB) gi|255537657|ref|XP_002509895.1| (e_value=9e-124) Na(+)/H(+) antiporter, putative [Ricinus communis];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=3e-117) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.2 (e_value=7e-119) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16640859 REVERSE LENGTH=742;; (*ITAG) Solyc02g071070.2.1 (e_value=6e-150) genomic_reference:SL2.40ch02 gene_region:35142603-35146386 transcript_region:SL2.40ch02:35142603..35146386+ go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00014184g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|3|0|231; (*GB) gi|186701211|gb|ACC91238.1| (e_value=1e-66) putative cation/hydrogen exchanger [Arabidopsis halleri];; (*SWP) sp|Q9SUQ7|CHX17_ARATH (e_value=2e-62) Cation/H(+) antiporter 17 OS=Arabidopsis thaliana GN=CHX17 PE=1 SV=1;; (*TAIR) AT4G23700.1 (e_value=1e-63) | Symbols: ATCHX17, CHX17 | cation/H+ exchanger 17 | chr4:12342534-12345616 REVERSE LENGTH=820;; (*ITAG) Solyc02g071070.2.1 (e_value=5e-84) genomic_reference:SL2.40ch02 gene_region:35142603-35146386 transcript_region:SL2.40ch02:35142603..35146386+ go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00010700g0001.1 protein AED:0.10 eAED:0.11 QI:230|0.57|0.53|0.86|1|1|15|0|1137; (*GB) gi|357501297|ref|XP_003620937.1| (e_value=0.0) Type I inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula];; (*SWP) sp|O80560|IP5PC_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1;; (*TAIR) AT2G43900.1 (e_value=0.0) | Symbols: | Endonuclease/exonuclease/phosphatase family protein | chr2:18178801-18183823 REVERSE LENGTH=1316;; (*ITAG) Solyc12g019080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9077732-9083860 transcript_region:SL2.40ch12:9077732..9083860- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00010700g0005.1 protein AED:0.42 eAED:0.42 QI:315|0.9|0.81|0.90|0.7|0.63|11|0|230; (*GB) gi|296087130|emb|CBI33504.3| (e_value=3e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9HXH0|SYV_PSEAE (e_value=4e-94) Valine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=valS PE=3 SV=1;; (*TAIR) AT5G16715.1 (e_value=3e-140) | Symbols: EMB2247 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr5:5485353-5493229 FORWARD LENGTH=974;; (*ITAG) Solyc12g019100.1.1 (e_value=6e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9114066-9123613 transcript_region:SL2.40ch12:9114066..9123613+ go_terms:GO:0005737 functional_description:"Valyl-tRNA synthetase (AHRD V1 ***- A7NGB2_ROSCS); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0005737 NbS00010700g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|1|0.66|0.75|4|0|550; (*GB) gi|147783618|emb|CAN68139.1| (e_value=0.0) hypothetical protein VITISV_035656 [Vitis vinifera];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-99) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT2G31820.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc12g019060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9071679-9076116 transcript_region:SL2.40ch12:9071679..9076116+ functional_description:"Ankyrin repeat domain protein (AHRD V1 *--- Q4EBT3_9RICK); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00061949g0001.1 protein AED:0.45 eAED:0.50 QI:0|0|0|1|1|1|2|0|115; (*GB) gi|6688560|emb|CAB65696.1| (e_value=2e-62) putative ferredoxin [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|P27788|FER3_MAIZE (e_value=9e-57) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=6e-51) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=7e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00035637g0014.1 protein AED:0.07 eAED:0.19 QI:0|0|0|1|0|0.25|4|0|661; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=0.0) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-46) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT3G46730.1 (e_value=1e-24) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc02g027080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00035637g0008.1 protein AED:0.30 eAED:0.35 QI:32|0.75|0.6|1|1|1|5|522|138; (*ITAG) Solyc12g009440.1.1 (e_value=2e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2711259-2714105 transcript_region:SL2.40ch12:2711259..2714105+ go_terms:GO:0006457 functional_description:"Bundle-sheath defective protein 2 family (AHRD V1 ***- D7LRE2_ARALY); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00035637g0012.1 protein AED:0.11 eAED:0.38 QI:70|1|0.66|1|0|0|3|58|55 NbS00035637g0015.1 protein AED:0.34 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|64 NbS00011714g0009.1 protein AED:0.06 eAED:0.09 QI:23|0.66|0|1|1|1|4|0|258; (*GB) gi|118482621|gb|ABK93230.1| (e_value=3e-122) unknown [Populus trichocarpa];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=2e-121) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=1e-122) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=9e-113) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00000856g0005.1 protein AED:0.42 eAED:0.44 QI:241|0|0.33|0.66|1|1|3|0|61; (*GB) gi|126238206|gb|ABO07414.1| (e_value=1e-19) SMC3 [Solanum lycopersicum];; (*ITAG) Solyc06g073780.2.1 (e_value=6e-22) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00003378g0012.1 protein AED:0.00 eAED:0.01 QI:229|1|0.5|1|1|1|2|0|458; (*GB) gi|350534446|ref|NP_001234141.1| (e_value=0.0) GTP cyclohydrolase I [Solanum lycopersicum];; (*SWP) sp|Q94465|GCH1_DICDI (e_value=2e-38) GTP cyclohydrolase 1 OS=Dictyostelium discoideum GN=gchA PE=1 SV=2;; (*TAIR) AT3G07270.1 (e_value=0.0) | Symbols: | GTP cyclohydrolase I | chr3:2315451-2317059 FORWARD LENGTH=466;; (*ITAG) Solyc06g083230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45029876-45033174 transcript_region:SL2.40ch06:45029876..45033174- go_terms:GO:0003934 functional_description:"GTP cyclohydrolase I (AHRD V1 **** Q8VYU3_SOLLC); contains Interpro domain(s) IPR001474 GTP cyclohydrolase I "; GO:0003934 NbS00003378g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|510|380; (*GB) gi|225458862|ref|XP_002283378.1| (e_value=2e-171) PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LSF5|PP254_ARATH (e_value=6e-160) Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1;; (*TAIR) AT3G25210.1 (e_value=4e-161) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9180348-9181487 FORWARD LENGTH=379;; (*ITAG) Solyc06g083200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45011661-45012800 transcript_region:SL2.40ch06:45011661..45012800- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q513_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003378g0004.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|255543194|ref|XP_002512660.1| (e_value=3e-100) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G23255.2 (e_value=5e-78) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. | chr3:8311795-8312947 FORWARD LENGTH=225;; (*ITAG) Solyc12g016210.1.1 (e_value=2e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6354251-6355473 transcript_region:SL2.40ch12:6354251..6355473- functional_description:"Unknown Protein (AHRD V1)"; NbS00003378g0010.1 protein AED:0.24 eAED:0.24 QI:542|0.88|0.9|1|0.55|0.5|10|251|317; (*GB) gi|225470035|ref|XP_002265228.1| (e_value=9e-93) PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera];; (*TAIR) AT4G13030.2 (e_value=3e-63) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7607400-7609656 FORWARD LENGTH=479;; (*ITAG) Solyc06g083220.2.1 (e_value=1e-140) genomic_reference:SL2.40ch06 gene_region:45024224-45029578 transcript_region:SL2.40ch06:45024224..45029578+ functional_description:"ATP binding protein (AHRD V1 *-*- B6TPV9_MAIZE)"; NbS00003378g0014.1 protein AED:0.34 eAED:0.34 QI:0|0.93|0.88|0.94|0.62|0.88|17|363|439; (*GB) gi|255580503|ref|XP_002531076.1| (e_value=0.0) mak, putative [Ricinus communis];; (*SWP) sp|P43294|MHK_ARATH (e_value=0.0) Serine/threonine-protein kinase MHK OS=Arabidopsis thaliana GN=MHK PE=2 SV=2;; (*TAIR) AT4G13020.1 (e_value=0.0) | Symbols: MHK | Protein kinase superfamily protein | chr4:7603947-7606812 FORWARD LENGTH=435;; (*ITAG) Solyc06g083210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45017429-45023473 transcript_region:SL2.40ch06:45017429..45023473+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- B7ZEB8_EUPRA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00043434g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|91 NbS00012690g0005.1 protein AED:0.15 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|376; (*GB) gi|224123202|ref|XP_002319019.1| (e_value=7e-127) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05330.1 (e_value=6e-93) | Symbols: ATN, ATTAN | cyclin family | chr3:1519162-1521159 REVERSE LENGTH=444;; (*ITAG) Solyc01g099270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81306624-81308855 transcript_region:SL2.40ch01:81306624..81308855- functional_description:"Microtubule binding protein (AHRD V1 ***- A6YTD5_CUCME)"; NbS00012690g0002.1 protein AED:0.21 eAED:0.21 QI:365|1|0.85|1|1|1|7|0|274; (*GB) gi|359487742|ref|XP_002280795.2| (e_value=9e-122) PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera];; (*TAIR) AT3G05345.1 (e_value=1e-104) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:1522449-1523847 REVERSE LENGTH=244;; (*ITAG) Solyc01g099260.2.1 (e_value=8e-155) genomic_reference:SL2.40ch01 gene_region:81302547-81306319 transcript_region:SL2.40ch01:81302547..81306319+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- A7J483_9EURY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00004436g0005.1 protein AED:0.39 eAED:0.39 QI:0|0.83|0.85|0.85|0.83|1|7|0|186; (*GB) gi|225454123|ref|XP_002269748.1| (e_value=5e-124) PREDICTED: cleavage and polyadenylation specificity factor subunit 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6DJE4|CPSF5_XENLA (e_value=4e-73) Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1;; (*TAIR) AT4G25550.1 (e_value=2e-118) | Symbols: | Cleavage/polyadenylation specificity factor, 25kDa subunit | chr4:13048519-13050873 FORWARD LENGTH=200;; (*ITAG) Solyc03g025880.2.1 (e_value=9e-129) genomic_reference:SL2.40ch03 gene_region:7657669-7669323 transcript_region:SL2.40ch03:7657669..7669323- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- B9EQF4_SALSA); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00000831g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|0.66|1|1|3|0|326; (*GB) gi|225463745|ref|XP_002265747.1| (e_value=2e-111) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LES3|AI5L2_ARATH (e_value=4e-94) ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1;; (*TAIR) AT3G56850.1 (e_value=3e-95) | Symbols: AREB3, DPBF3 | ABA-responsive element binding protein 3 | chr3:21046554-21047894 REVERSE LENGTH=297;; (*ITAG) Solyc10g081350.1.1 (e_value=6e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61775875-61780773 transcript_region:SL2.40ch10:61775875..61780773+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00000831g0017.1 protein AED:0.08 eAED:0.11 QI:404|0.25|0.2|1|0.5|0.4|5|0|764; (*GB) gi|147857558|emb|CAN82876.1| (e_value=3e-91) hypothetical protein VITISV_043530 [Vitis vinifera];; (*TAIR) AT5G17910.2 (e_value=3e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). | chr5:5927906-5932292 FORWARD LENGTH=1342;; (*ITAG) Solyc10g077000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59252848-59257424 transcript_region:SL2.40ch10:59252848..59257424+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)"; NbS00000831g0016.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|0.66|0.5|4|0|330; (*GB) gi|359480937|ref|XP_002270751.2| (e_value=3e-126) PREDICTED: random slug protein 5 [Vitis vinifera];; (*SWP) sp|Q9UU99|YJX4_SCHPO (e_value=1e-27) CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC23B6.04c PE=1 SV=1;; (*TAIR) AT1G22180.2 (e_value=2e-109) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:7828434-7829745 REVERSE LENGTH=314;; (*ITAG) Solyc09g098600.2.1 (e_value=2e-165) genomic_reference:SL2.40ch09 gene_region:67659741-67661263 transcript_region:SL2.40ch09:67659741..67661263+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00000831g0021.1 protein AED:0.13 eAED:0.13 QI:254|0.91|0.76|1|0.66|0.69|13|386|740; (*GB) gi|359480998|ref|XP_003632552.1| (e_value=2e-177) PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera];; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=8e-111) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT1G08680.4 (e_value=4e-112) | Symbols: ZIGA4 | ARF GAP-like zinc finger-containing protein ZIGA4 | chr1:2762820-2768387 FORWARD LENGTH=651;; (*ITAG) Solyc10g076990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59242945-59251017 transcript_region:SL2.40ch10:59242945..59251017+ go_terms:GO:0032312 functional_description:"Arf-GAP domain and FG repeats-containing protein 1 (AHRD V1 *--- AGFG1_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbS00000831g0018.1 protein AED:0.10 eAED:0.10 QI:119|1|1|1|0.5|0.66|3|979|235; (*GB) gi|255572893|ref|XP_002527378.1| (e_value=8e-81) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G56820.1 (e_value=1e-69) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:21040061-21041711 REVERSE LENGTH=220;; (*ITAG) Solyc10g076930.1.1 (e_value=2e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59216637-59218670 transcript_region:SL2.40ch10:59216637..59218670- functional_description:"Cupin RmlC-type (AHRD V1 ***- A2Q1Y8_MEDTR)"; NbS00000831g0026.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|135; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-32) hypothetical protein [Nicotiana tabacum]; NbS00024130g0006.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.42|1|0.16|0.28|7|607|171; (*ITAG) Solyc04g072880.2.1 (e_value=6e-38) genomic_reference:SL2.40ch04 gene_region:57425743-57431154 transcript_region:SL2.40ch04:57425743..57431154+ go_terms:GO:0008353 functional_description:"RNA polymerase II holoenzyme cyclin-like subunit (AHRD V1 **** SSN8_NEUCR); contains Interpro domain(s) IPR015432 Cyclin H "; GO:0008353 NbS00024130g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|225450863|ref|XP_002280365.1| (e_value=1e-61) PREDICTED: nuclear transcription factor Y subunit B-5 [Vitis vinifera];; (*SWP) sp|O04027|NFYB4_ARATH (e_value=2e-52) Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1;; (*TAIR) AT1G09030.1 (e_value=2e-53) | Symbols: NF-YB4 | nuclear factor Y, subunit B4 | chr1:2908611-2909030 REVERSE LENGTH=139;; (*ITAG) Solyc01g099320.2.1 (e_value=3e-70) genomic_reference:SL2.40ch01 gene_region:81371886-81372422 transcript_region:SL2.40ch01:81371886..81372422- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00021118g0003.1 protein AED:0.62 eAED:0.68 QI:0|0.5|0|1|0.5|1|3|0|122; (*GB) gi|313507398|gb|ADR65113.1| (e_value=1e-65) mevalonate 5-diphosphate decarboxylase [Catharanthus roseus];; (*SWP) sp|Q5U403|MVD1_DANRE (e_value=3e-28) Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1;; (*TAIR) AT2G38700.1 (e_value=2e-62) | Symbols: MVD1, ATMVD1 | mevalonate diphosphate decarboxylase 1 | chr2:16180918-16183785 REVERSE LENGTH=412;; (*ITAG) Solyc11g007020.1.1 (e_value=7e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1510020-1515652 transcript_region:SL2.40ch11:1510020..1515652+ go_terms:GO:0016310,GO:0008299 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 ***- Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0016310,GO:0008299 NbS00011825g0001.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|1|1|3|12|95; (*GB) gi|225456262|ref|XP_002283422.1| (e_value=1e-60) PREDICTED: brain protein 44-like protein isoform 1 [Vitis vinifera];; (*SWP) sp|Q9Y5U8|BR44L_HUMAN (e_value=4e-31) Brain protein 44-like protein OS=Homo sapiens GN=BRP44L PE=1 SV=1;; (*TAIR) AT5G20090.2 (e_value=8e-63) | Symbols: | Uncharacterised protein family (UPF0041) | chr5:6787246-6788000 REVERSE LENGTH=110;; (*ITAG) Solyc08g082760.2.1 (e_value=5e-68) genomic_reference:SL2.40ch08 gene_region:62622799-62624873 transcript_region:SL2.40ch08:62622799..62624873+ go_terms:GO:0005515 functional_description:"Brain protein 44-like protein (AHRD V1 ***- B6SX80_MAIZE); contains Interpro domain(s) IPR005336 Uncharacterised protein family UPF0041 "; GO:0005515 NbS00028222g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|0.8|1|6|0|548; (*GB) gi|225446879|ref|XP_002279893.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 15 [Vitis vinifera];; (*SWP) sp|Q8L4B0|GAUTF_ARATH (e_value=0.0) Probable galacturonosyltransferase 15 OS=Arabidopsis thaliana GN=GAUT15 PE=2 SV=1;; (*TAIR) AT3G58790.1 (e_value=0.0) | Symbols: GAUT15 | galacturonosyltransferase 15 | chr3:21742455-21745972 REVERSE LENGTH=540;; (*ITAG) Solyc07g055930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61175343-61181935 transcript_region:SL2.40ch07:61175343..61181935- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IA47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00028222g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.75|0.6|1|0.5|0.6|5|193|213; (*GB) gi|7271222|emb|CAB81558.1| (e_value=2e-104) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P25012|CCNB2_SOYBN (e_value=7e-71) G2/mitotic-specific cyclin S13-7 (Fragment) OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G26760.1 (e_value=1e-68) | Symbols: CYCB1;4 | Cyclin B1;4 | chr2:11401551-11403205 FORWARD LENGTH=387;; (*ITAG) Solyc01g009040.2.1 (e_value=5e-99) genomic_reference:SL2.40ch01 gene_region:3041736-3044740 transcript_region:SL2.40ch01:3041736..3044740+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbS00060350g0013.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|1|0.75|0.6|5|748|428; (*GB) gi|225460646|ref|XP_002266417.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267465 [Vitis vinifera];; (*TAIR) AT1G43580.1 (e_value=0.0) | Symbols: | Sphingomyelin synthetase family protein | chr1:16410673-16412612 REVERSE LENGTH=421;; (*ITAG) Solyc04g071550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56129194-56133184 transcript_region:SL2.40ch04:56129194..56133184+ functional_description:"Unknown Protein (AHRD V1)"; NbS00060350g0003.1 protein AED:0.32 eAED:0.32 QI:510|0.53|0.68|0.87|1|1|16|326|717; (*GB) gi|86440327|gb|ABC96116.1| (e_value=0.0) sterol glucosyltransferase [Withania somnifera];; (*SWP) sp|Q54IL5|UGT52_DICDI (e_value=3e-46) UDP-sugar-dependent glycosyltransferase 52 OS=Dictyostelium discoideum GN=ugt52 PE=2 SV=1;; (*TAIR) AT1G43620.3 (e_value=0.0) | Symbols: UGT80B1 | UDP-Glycosyltransferase superfamily protein | chr1:16425654-16429500 REVERSE LENGTH=615;; (*ITAG) Solyc04g071540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56116098-56126810 transcript_region:SL2.40ch04:56116098..56126810+ go_terms:GO:0016906 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 **** B6SKE1_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0016906 NbS00014173g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|1|1|15|0|760; (*GB) gi|255537317|ref|XP_002509725.1| (e_value=0.0) map3k delta-1 protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=2e-97) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G23050.2 (e_value=1e-133) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr4:12080112-12083708 FORWARD LENGTH=736;; (*ITAG) Solyc08g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2412322-2421171 transcript_region:SL2.40ch08:2412322..2421171+ go_terms:GO:0005515,GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004712 NbS00006134g0012.1 protein AED:0.07 eAED:0.07 QI:316|0.5|0.66|1|1|1|3|351|302; (*ITAG) Solyc07g038160.2.1 (e_value=1e-45) genomic_reference:SL2.40ch07 gene_region:42820920-42822735 transcript_region:SL2.40ch07:42820920..42822735+ go_terms:GO:0006355 functional_description:"GATA transcription factor 20 (AHRD V1 *-*- B6SS40_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00006134g0013.1 protein AED:0.15 eAED:0.15 QI:256|1|0.75|1|0.63|0.58|12|0|831; (*GB) gi|359484485|ref|XP_002279676.2| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100250764 [Vitis vinifera];; (*TAIR) AT5G56850.1 (e_value=4e-30) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:22985432-22987977 REVERSE LENGTH=551;; (*ITAG) Solyc07g039190.2.1 (e_value=2e-165) genomic_reference:SL2.40ch07 gene_region:42878759-42882589 transcript_region:SL2.40ch07:42878759..42882589- functional_description:"Unknown Protein (AHRD V1)"; NbS00006134g0015.1 protein AED:0.17 eAED:0.17 QI:87|0.66|0.5|1|0.66|0.75|4|708|138; (*GB) gi|255572965|ref|XP_002527413.1| (e_value=3e-17) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G55160.1 (e_value=1e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20578476-20579803 FORWARD LENGTH=188;; (*ITAG) Solyc07g038190.2.1 (e_value=2e-35) genomic_reference:SL2.40ch07 gene_region:42863698-42865756 transcript_region:SL2.40ch07:42863698..42865756- functional_description:"Unknown Protein (AHRD V1)"; NbS00003544g0004.1 protein AED:0.28 eAED:0.28 QI:215|0.6|0.66|1|1|1|6|225|421; (*GB) gi|225462507|ref|XP_002269087.1| (e_value=4e-135) PREDICTED: protein SRG1 [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=1e-109) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=1e-110) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071360.2.1 (e_value=7e-175) genomic_reference:SL2.40ch02 gene_region:35415823-35419393 transcript_region:SL2.40ch02:35415823..35419393- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00003544g0008.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.5|1|0|0.25|4|455|151; (*GB) gi|255575141|ref|XP_002528475.1| (e_value=3e-41) Leucoanthocyanidin dioxygenase, putative [Ricinus communis];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=5e-36) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=4e-37) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071380.2.1 (e_value=9e-60) genomic_reference:SL2.40ch02 gene_region:35430526-35435576 transcript_region:SL2.40ch02:35430526..35435576- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 3 (AHRD V1 **-- ACCO3_CUCME); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00003544g0011.1 protein AED:0.27 eAED:0.27 QI:0|0.25|0.2|1|0|0.4|5|0|271; (*GB) gi|225445513|ref|XP_002282179.1| (e_value=5e-65) PREDICTED: TBC1 domain family member 13 [Vitis vinifera];; (*SWP) sp|Q9URY3|YLOH_SCHPO (e_value=7e-14) TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=2 SV=4;; (*TAIR) AT4G13730.2 (e_value=5e-31) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:7970299-7973901 FORWARD LENGTH=408;; (*ITAG) Solyc02g071420.2.1 (e_value=2e-97) genomic_reference:SL2.40ch02 gene_region:35458259-35460585 transcript_region:SL2.40ch02:35458259..35460585+ go_terms:GO:0005515,GO:0005096 functional_description:"TBC1 domain family member 13 (AHRD V1 ***- D3BTH5_POLPA); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005515,GO:0005096 NbS00003544g0010.1 protein AED:0.33 eAED:0.40 QI:0|0.75|0.4|1|0|0.4|5|0|212; (*GB) gi|225445513|ref|XP_002282179.1| (e_value=2e-91) PREDICTED: TBC1 domain family member 13 [Vitis vinifera];; (*SWP) sp|Q9NVG8|TBC13_HUMAN (e_value=1e-47) TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3;; (*TAIR) AT4G13730.1 (e_value=2e-71) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:7970299-7974055 FORWARD LENGTH=449;; (*ITAG) Solyc02g071420.2.1 (e_value=5e-108) genomic_reference:SL2.40ch02 gene_region:35458259-35460585 transcript_region:SL2.40ch02:35458259..35460585+ go_terms:GO:0005515,GO:0005096 functional_description:"TBC1 domain family member 13 (AHRD V1 ***- D3BTH5_POLPA); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005515,GO:0005096 NbS00013896g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|128; (*GB) gi|296081725|emb|CBI20730.3| (e_value=5e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VYG3|GUN16_ARATH (e_value=8e-33) Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=6e-34) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=3e-40) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00013896g0019.1 protein AED:0.32 eAED:0.32 QI:0|1|0.75|1|1|1|4|0|243; (*GB) gi|224074293|ref|XP_002304342.1| (e_value=3e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23910.1 (e_value=3e-39) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10177902-10179789 FORWARD LENGTH=304;; (*ITAG) Solyc06g061280.2.1 (e_value=4e-114) genomic_reference:SL2.40ch06 gene_region:35665755-35668469 transcript_region:SL2.40ch06:35665755..35668469- go_terms:GO:0033729 functional_description:"Cinnamoyl-CoA reductase-like protein (AHRD V1 **** Q9M0B3_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00013896g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|195542260|gb|AAR87850.2| (e_value=6e-84) fertilization-related kinase 1 [Solanum chacoense];; (*SWP) sp|B2GUY1|PLK4_RAT (e_value=3e-20) Serine/threonine-protein kinase PLK4 OS=Rattus norvegicus GN=Plk4 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=9e-47) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065790.1.1 (e_value=4e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37624839-37625912 transcript_region:SL2.40ch06:37624839..37625912+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013896g0002.1 protein AED:0.15 eAED:0.13 QI:282|1|0.66|1|0|0|3|275|877; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LVQ5|PP432_ARATH (e_value=1e-86) Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2;; (*TAIR) AT5G55840.1 (e_value=9e-88) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22598038-22601688 FORWARD LENGTH=1136;; (*ITAG) Solyc03g118280.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013896g0006.1 protein AED:0.73 eAED:0.73 QI:0|-1|0|1|-1|1|1|0|101 NbS00013896g0020.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|3|0|301; (*GB) gi|195542260|gb|AAR87850.2| (e_value=5e-112) fertilization-related kinase 1 [Solanum chacoense];; (*SWP) sp|Q54C18|Y9452_DICDI (e_value=1e-21) Probable serine/threonine-protein kinase DDB_G0293276 OS=Dictyostelium discoideum GN=DDB_G0293276 PE=3 SV=1;; (*TAIR) AT3G50310.1 (e_value=9e-36) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc06g065660.1.1 (e_value=2e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00004426g0006.1 protein AED:0.24 eAED:0.25 QI:0|0.81|0.70|0.94|0.75|0.88|17|330|425; (*GB) gi|359473149|ref|XP_002282407.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243914 [Vitis vinifera];; (*TAIR) AT1G67850.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404;; (*ITAG) Solyc05g013660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6959238-6965258 transcript_region:SL2.40ch05:6959238..6965258- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TJT7_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00004426g0005.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|3|0|123; (*ITAG) Solyc05g013640.1.1 (e_value=2e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6944499-6944840 transcript_region:SL2.40ch05:6944499..6944840+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020161g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|82400146|gb|ABB72812.1| (e_value=3e-60) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=2e-61) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=4e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=4e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00020161g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0.85|1|1|1|7|209|534; (*GB) gi|162568918|gb|ABY19385.1| (e_value=0.0) pheophorbide A oxygenase 2 [Nicotiana tabacum];; (*SWP) sp|Q9FYC2|PAO_ARATH (e_value=0.0) Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1;; (*TAIR) AT3G44880.1 (e_value=0.0) | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr3:16383858-16386204 FORWARD LENGTH=537;; (*ITAG) Solyc11g066440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49284557-49288143 transcript_region:SL2.40ch11:49284557..49288143- go_terms:GO:0055114 functional_description:"Pheophorbide a oxygenase (Fragment) (AHRD V1 *--- D1MWF5_BRAOL); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0055114 NbS00020161g0004.1 protein AED:0.63 eAED:0.68 QI:0|0.5|0.33|0.66|1|1|3|0|80; (*GB) gi|45935115|gb|AAS79573.1| (e_value=2e-20) hypothetical protein [Ipomoea trifida];; (*TAIR) AT5G22875.2 (e_value=3e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:7651307-7651603 FORWARD LENGTH=69;; (*ITAG) Solyc11g066450.1.1 (e_value=5e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49289579-49289890 transcript_region:SL2.40ch11:49289579..49289890- functional_description:"Unknown Protein (AHRD V1)"; NbS00050990g0008.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0.5|2|0|278; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-58) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021791g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|416; (*GB) gi|225432378|ref|XP_002276628.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244223 [Vitis vinifera];; (*TAIR) AT5G18660.1 (e_value=0.0) | Symbols: PCB2 | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6220872-6222125 REVERSE LENGTH=417;; (*ITAG) Solyc01g067290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68104891-68106498 transcript_region:SL2.40ch01:68104891..68106498+ go_terms:GO:0051744 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C8RY11_9RHOB); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0051744 NbS00021791g0013.1 protein AED:0.14 eAED:0.15 QI:284|0.89|0.85|1|0.84|0.8|20|576|797; (*GB) gi|82470783|gb|ABB77428.1| (e_value=0.0) cullin 1-like protein C [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc01g067100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67853401-67862419 transcript_region:SL2.40ch01:67853401..67862419- go_terms:GO:0030332 functional_description:"Cullin 1-like protein C (AHRD V1 ***- A0ELU7_PETIN); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00021791g0015.1 protein AED:0.01 eAED:0.01 QI:66|1|1|1|1|1|3|71|203; (*GB) gi|351726435|ref|NP_001238662.1| (e_value=2e-42) CASP-like protein 7 [Glycine max];; (*SWP) sp|C6SVQ5|CSPL7_SOYBN (e_value=6e-44) CASP-like protein 7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G15610.1 (e_value=4e-38) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:8909162-8910641 FORWARD LENGTH=193;; (*ITAG) Solyc01g067300.2.1 (e_value=2e-78) genomic_reference:SL2.40ch01 gene_region:68108199-68112618 transcript_region:SL2.40ch01:68108199..68112618- functional_description:"UPF0497 membrane protein 13 (AHRD V1 ***- U497D_SOYBN); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00021791g0017.1 protein AED:0.19 eAED:0.19 QI:85|1|1|1|0.66|0.75|4|245|251; (*GB) gi|297736909|emb|CBI26110.3| (e_value=4e-88) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G15563.1 (e_value=2e-45) | Symbols: | unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8891771-8892348 FORWARD LENGTH=167;; (*ITAG) Solyc01g067280.2.1 (e_value=2e-146) genomic_reference:SL2.40ch01 gene_region:68082848-68085391 transcript_region:SL2.40ch01:68082848..68085391- functional_description:"F-box domain containing protein (AHRD V1 ***- B6T548_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048271g0002.1 protein AED:0.33 eAED:0.33 QI:0|1|0.85|1|1|1|7|231|438; (*GB) gi|224119626|ref|XP_002318120.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XEE9|ALG11_ARATH (e_value=0.0) GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG11 PE=1 SV=2;; (*TAIR) AT2G40190.1 (e_value=0.0) | Symbols: LEW3 | UDP-Glycosyltransferase superfamily protein | chr2:16785232-16787257 FORWARD LENGTH=463;; (*ITAG) Solyc10g076800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59085382-59089499 transcript_region:SL2.40ch10:59085382..59089499- go_terms:GO:0009058 functional_description:"Alpha-1 2-mannosyltransferase alg11 (AHRD V1 **-- B6SM36_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00048271g0001.1 protein AED:0.51 eAED:0.70 QI:0|0.33|0.25|1|1|1|4|0|115; (*GB) gi|297834836|ref|XP_002885300.1| (e_value=4e-23) hypothetical protein ARALYDRAFT_479436 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G19210.1 (e_value=3e-25) | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 | chr3:6652799-6658876 REVERSE LENGTH=910;; (*ITAG) Solyc04g056410.2.1 (e_value=2e-36) genomic_reference:SL2.40ch04 gene_region:53331546-53342670 transcript_region:SL2.40ch04:53331546..53342670+ go_terms:GO:0005524 functional_description:"DNA repair and recombination protein RAD54 (AHRD V1 **-- D0MQ92_PHYIN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00013770g0011.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|742; (*GB) gi|359491584|ref|XP_002279663.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255253 [Vitis vinifera];; (*SWP) sp|Q7Z494|NPHP3_HUMAN (e_value=2e-13) Nephrocystin-3 OS=Homo sapiens GN=NPHP3 PE=1 SV=1;; (*TAIR) AT1G27500.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9551629-9553654 REVERSE LENGTH=650;; (*ITAG) Solyc03g114320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58383943-58387290 transcript_region:SL2.40ch03:58383943..58387290+ go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SPN7_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00013770g0009.1 protein AED:0.27 eAED:0.27 QI:139|1|1|1|1|1|12|236|473; (*GB) gi|111227950|gb|ABH08964.1| (e_value=0.0) 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Nicotiana tabacum];; (*SWP) sp|Q9XES0|DXR_MENPI (e_value=0.0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2;; (*TAIR) AT5G62790.1 (e_value=0.0) | Symbols: DXR, PDE129 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | chr5:25214358-25217292 REVERSE LENGTH=477;; (*ITAG) Solyc03g114340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58400724-58406203 transcript_region:SL2.40ch03:58400724..58406203+ go_terms:GO:0030604,GO:0004412 functional_description:"1-deoxy-D-xylulose-5-phosphate reductoisomerase (AHRD V1 **** Q947C3_SOLLC); contains Interpro domain(s) IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase "; GO:0030604,GO:0004412 NbS00013770g0008.1 protein AED:0.35 eAED:0.35 QI:532|0.84|0.85|1|0.61|0.57|14|0|415; (*GB) gi|255540671|ref|XP_002511400.1| (e_value=8e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FXT6|PEX14_ARATH (e_value=1e-37) Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2;; (*TAIR) AT5G62810.1 (e_value=8e-39) | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220323-25223571 FORWARD LENGTH=507;; (*ITAG) Solyc06g071470.2.1 (e_value=8e-114) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00049501g0012.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|0|504; (*GB) gi|255563228|ref|XP_002522617.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G33600.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33590.1); Has 131 Blast hits to 131 proteins in 40 species: Archae - 0; Bacteria - 9; Metazoa - 12; Fungi - 24; Plants - 58; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | chr4:16144452-16145864 REVERSE LENGTH=470;; (*ITAG) Solyc10g047500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:36461789-36463293 transcript_region:SL2.40ch10:36461789..36463293+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049501g0008.1 protein AED:0.30 eAED:0.30 QI:7|0.33|0.5|1|1|1|4|0|405; (*GB) gi|356554749|ref|XP_003545705.1| (e_value=7e-134) PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial-like [Glycine max];; (*SWP) sp|Q94B59|PP372_ARATH (e_value=1e-122) Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1;; (*TAIR) AT5G09450.1 (e_value=1e-123) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:2941864-2943324 FORWARD LENGTH=409;; (*ITAG) Solyc10g047370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36110221-36114394 transcript_region:SL2.40ch10:36110221..36114394- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3C7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049501g0011.1 protein AED:0.28 eAED:0.51 QI:9|0|0|1|0|0.5|2|0|170; (*GB) gi|255563230|ref|XP_002522618.1| (e_value=1e-75) hypothetical protein RCOM_0884570 [Ricinus communis];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=7e-67) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT5G64330.1 (e_value=6e-68) | Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746;; (*ITAG) Solyc10g047530.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:36521301-36523609 transcript_region:SL2.40ch10:36521301..36523609+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbC23327443g0001.1 protein AED:0.00 eAED:0.00 QI:60|1|0.5|1|0|0|2|0|16 NbS00029754g0004.1 protein AED:0.25 eAED:0.26 QI:246|0.4|0.36|1|0.9|0.81|11|0|636; (*GB) gi|357454461|ref|XP_003597511.1| (e_value=5e-50) hypothetical protein MTR_2g098830 [Medicago truncatula];; (*TAIR) AT1G05950.1 (e_value=3e-33) | Symbols: | unknown protein; Has 50 Blast hits to 45 proteins in 14 species: Archae - 5; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:1804573-1807471 REVERSE LENGTH=627;; (*ITAG) Solyc07g066300.2.1 (e_value=1e-159) genomic_reference:SL2.40ch07 gene_region:64998856-65007477 transcript_region:SL2.40ch07:64998856..65007477+ functional_description:"Aleurone layer morphogenesis protein (AHRD V1 *-*- Q7XZV4_ORYSJ)"; NbS00022621g0107.1 protein AED:0.05 eAED:0.05 QI:43|1|1|1|1|1|3|59|368 NbS00022621g0108.1 protein AED:0.34 eAED:0.34 QI:466|1|1|1|0|0.25|4|0|53 NbS00022621g0102.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|133 NbS00024576g0009.1 protein AED:0.35 eAED:0.38 QI:0|0.5|0.42|1|0.16|0.42|7|0|209; (*GB) gi|302143294|emb|CBI21855.3| (e_value=1e-36) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUQ5|UBC25_ARATH (e_value=9e-30) Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1;; (*TAIR) AT3G15355.1 (e_value=7e-31) | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme 25 | chr3:5183858-5186669 FORWARD LENGTH=609;; (*ITAG) Solyc07g053960.2.1 (e_value=1e-53) genomic_reference:SL2.40ch07 gene_region:59681394-59685078 transcript_region:SL2.40ch07:59681394..59685078+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00024576g0010.1 protein AED:0.62 eAED:0.76 QI:0|0|0|0.5|0|0|2|0|82 NbS00017248g0002.1 protein AED:0.13 eAED:0.13 QI:383|1|1|1|0.75|0.6|5|360|572; (*GB) gi|356539537|ref|XP_003538254.1| (e_value=0.0) PREDICTED: peptide transporter PTR1-like [Glycine max];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=0.0) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=0.0) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc06g076750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44048734-44052728 transcript_region:SL2.40ch06:44048734..44052728- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00017248g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|147856803|emb|CAN79179.1| (e_value=4e-50) hypothetical protein VITISV_016730 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=5e-29) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT5G04110.1 (e_value=1e-36) | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112 REVERSE LENGTH=546;; (*ITAG) Solyc06g076710.1.1 (e_value=1e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:44018458-44020445 transcript_region:SL2.40ch06:44018458..44020445- functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR000949 ELM2 "; NbS00020202g0004.1 protein AED:0.11 eAED:0.11 QI:321|0.72|0.78|0.94|1|1|19|326|793; (*GB) gi|147768264|emb|CAN78128.1| (e_value=0.0) hypothetical protein VITISV_028758 [Vitis vinifera];; (*SWP) sp|Q07970|ATK1_ARATH (e_value=0.0) Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1;; (*TAIR) AT4G21270.1 (e_value=0.0) | Symbols: ATK1, KATA, KATAP | kinesin 1 | chr4:11329579-11333884 REVERSE LENGTH=793;; (*ITAG) Solyc07g064030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63553126-63558435 transcript_region:SL2.40ch07:63553126..63558435+ go_terms:GO:0008569 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9M0X6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008569 NbC25866576g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.8|1|0.88|0.9|10|378|321; (*GB) gi|224103039|ref|XP_002312899.1| (e_value=3e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|B0G107|SAMH1_DICDI (e_value=4e-38) Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1;; (*TAIR) AT5G40270.1 (e_value=1e-142) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc02g086900.2.1 (e_value=9e-173) genomic_reference:SL2.40ch02 gene_region:44070513-44077345 transcript_region:SL2.40ch02:44070513..44077345+ go_terms:GO:0003824 functional_description:"Metal-dependent phosphohydrolase HD domain-containing protein (AHRD V1 **-- D7MJA0_ARALY); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00021162g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.91|0.84|1|0.58|0.53|13|298|481; (*GB) gi|225441541|ref|XP_002280990.1| (e_value=0.0) PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera];; (*SWP) sp|Q8W0Z9|CCR4A_ARATH (e_value=0.0) Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1;; (*TAIR) AT3G58560.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:21650880-21653896 REVERSE LENGTH=602;; (*ITAG) Solyc10g078950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59912795-59921519 transcript_region:SL2.40ch10:59912795..59921519- functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 (AHRD V1 **-- D3TNH5_GLOMM); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00021162g0006.1 protein AED:0.10 eAED:0.10 QI:76|0.85|0.75|1|0.85|0.75|8|109|391; (*GB) gi|38488409|emb|CAE55204.1| (e_value=0.0) protein kinase 2 [Nicotiana tabacum];; (*SWP) sp|P93749|Y2197_ARATH (e_value=0.0) Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1;; (*TAIR) AT2G41970.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17520517-17522304 REVERSE LENGTH=365;; (*ITAG) Solyc10g078940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59908550-59910947 transcript_region:SL2.40ch10:59908550..59910947+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011054g0005.1 protein AED:0.25 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|81 NbS00017887g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|624; (*GB) gi|147866236|emb|CAN82042.1| (e_value=7e-79) hypothetical protein VITISV_033523 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=4e-60) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc05g008830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3057292-3060357 transcript_region:SL2.40ch05:3057292..3060357+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00000138g0005.1 protein AED:0.21 eAED:0.24 QI:24|0|0|1|0.5|0.33|3|0|811; (*GB) gi|224068540|ref|XP_002302767.1| (e_value=5e-143) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=1e-50) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=7e-52) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc01g079380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70972797-70974284 transcript_region:SL2.40ch01:70972797..70974284+ go_terms:GO:0003700,GO:0042803 functional_description:"GRAS transcription factor (Fragment) (AHRD V1 **-* A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0042803 NbS00000138g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|1|1|2|0|115; (*ITAG) Solyc01g079370.2.1 (e_value=7e-26) genomic_reference:SL2.40ch01 gene_region:70965876-70969622 transcript_region:SL2.40ch01:70965876..70969622+ functional_description:"GRAS transcription factor (Fragment) (AHRD V1 *--- A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00000138g0007.1 protein AED:0.46 eAED:0.48 QI:0|0|0|1|0|0|3|0|146; (*GB) gi|359480163|ref|XP_002270718.2| (e_value=3e-46) PREDICTED: uncharacterized protein LOC100267467 [Vitis vinifera];; (*TAIR) AT1G02570.1 (e_value=2e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02575.1); Has 108 Blast hits to 55 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:541380-542216 FORWARD LENGTH=278;; (*ITAG) Solyc01g079370.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:70965876-70969622 transcript_region:SL2.40ch01:70965876..70969622+ functional_description:"GRAS transcription factor (Fragment) (AHRD V1 *--- A2Q2Y2_MEDTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00006341g0014.1 protein AED:0.02 eAED:0.02 QI:275|1|1|1|0.6|0.5|6|359|220; (*GB) gi|225464234|ref|XP_002267063.1| (e_value=2e-138) PREDICTED: putative vesicle-associated membrane protein 726 isoform 1 [Vitis vinifera];; (*SWP) sp|O48850|VA725_ARATH (e_value=3e-130) Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2;; (*TAIR) AT2G32670.1 (e_value=2e-131) | Symbols: ATVAMP725, VAMP725 | vesicle-associated membrane protein 725 | chr2:13857941-13859346 FORWARD LENGTH=285;; (*ITAG) Solyc09g061620.2.1 (e_value=7e-148) genomic_reference:SL2.40ch09 gene_region:55703304-55707709 transcript_region:SL2.40ch09:55703304..55707709+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00006341g0006.1 protein AED:0.12 eAED:0.13 QI:84|0.66|0.75|1|1|1|4|0|269; (*GB) gi|224065324|ref|XP_002301774.1| (e_value=3e-128) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48850.1 (e_value=2e-111) | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19805576-19807699 REVERSE LENGTH=306;; (*ITAG) Solyc09g061700.2.1 (e_value=3e-158) genomic_reference:SL2.40ch09 gene_region:55792112-55794516 transcript_region:SL2.40ch09:55792112..55794516- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006341g0012.1 protein AED:0.13 eAED:0.13 QI:288|1|1|1|0.75|0.6|5|345|309; (*GB) gi|255560191|ref|XP_002521113.1| (e_value=2e-165) pantoate-beta-alanine ligase, putative [Ricinus communis];; (*SWP) sp|O24035|PANC_LOTJA (e_value=4e-159) Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3;; (*TAIR) AT5G48840.1 (e_value=5e-156) | Symbols: PANC, PTS, ATPTS | homolog of bacterial PANC | chr5:19803823-19805041 REVERSE LENGTH=310;; (*ITAG) Solyc09g061680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:55748435-55751717 transcript_region:SL2.40ch09:55748435..55751717- go_terms:GO:0004592,GO:0042803 functional_description:"Pantothenate synthetase (AHRD V1 ***- D2C4V4_THENR); contains Interpro domain(s) IPR003721 Pantoate-beta-alanine ligase "; GO:0004592,GO:0042803 NbS00005824g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|775; (*GB) gi|225442092|ref|XP_002272769.1| (e_value=0.0) PREDICTED: subtilisin-like protease isoform 1 [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc06g062950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00005824g0007.1 protein AED:0.07 eAED:0.10 QI:2678|0|0.33|1|0|0.33|3|195|108 NbS00005824g0008.1 protein AED:0.35 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|203; (*GB) gi|224119600|ref|XP_002331200.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72510.2 (e_value=4e-54) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc06g062960.1.1 (e_value=8e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36127141-36127632 transcript_region:SL2.40ch06:36127141..36127632- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00032740g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.4|1|1|1|5|385|1020; (*GB) gi|5757903|gb|AAD50631.1|AF122901_1 (e_value=0.0) phytochrome B2 [Solanum lycopersicum];; (*SWP) sp|P29130|PHYB_TOBAC (e_value=0.0) Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2;; (*TAIR) AT2G18790.1 (e_value=0.0) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc05g053410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62648223-62653411 transcript_region:SL2.40ch05:62648223..62653411- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B2"; GO:0042802,GO:0009883 NbS00036315g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|0|1|0|90 NbS00031877g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|1|1|1|6|0|167; (*GB) gi|147807231|emb|CAN75162.1| (e_value=3e-57) hypothetical protein VITISV_017383 [Vitis vinifera];; (*SWP) sp|Q1ECE0|VAP41_ARATH (e_value=2e-51) Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1;; (*TAIR) AT5G54110.1 (e_value=1e-52) | Symbols: ATMAMI, MAMI | membrane-associated mannitol-induced | chr5:21958356-21960367 FORWARD LENGTH=266;; (*ITAG) Solyc12g005390.1.1 (e_value=7e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:231873-235689 transcript_region:SL2.40ch12:231873..235689+ go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00031877g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.66|1|0.8|0.83|6|0|640; (*GB) gi|255569589|ref|XP_002525760.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q94AS9|CNGC4_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2;; (*TAIR) AT5G54250.3 (e_value=0.0) | Symbols: CNGC4 | cyclic nucleotide-gated cation channel 4 | chr5:22025684-22029971 REVERSE LENGTH=689;; (*ITAG) Solyc12g005400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:236128-242060 transcript_region:SL2.40ch12:236128..242060- functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00058804g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|77403667|dbj|BAE46412.1| (e_value=5e-49) Pre-mRNA splicing factor [Solanum tuberosum];; (*TAIR) AT4G31200.1 (e_value=3e-42) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650;; (*ITAG) Solyc10g083200.1.1 (e_value=9e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00011768g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|139; (*ITAG) Solyc06g073850.1.1 (e_value=6e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:41993432-41993875 transcript_region:SL2.40ch06:41993432..41993875- functional_description:"Unknown Protein (AHRD V1)"; NbS00057579g0001.1 protein AED:0.21 eAED:0.21 QI:139|0.5|0.33|1|1|1|3|0|601; (*GB) gi|225433302|ref|XP_002282386.1| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 [Vitis vinifera];; (*SWP) sp|Q9T0G7|SUVH9_ARATH (e_value=0.0) Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 OS=Arabidopsis thaliana GN=SUVH9 PE=2 SV=1;; (*TAIR) AT4G13460.2 (e_value=0.0) | Symbols: SDG22, SUVH9, SET22 | SU(VAR)3-9 homolog 9 | chr4:7824653-7826605 REVERSE LENGTH=650;; (*ITAG) Solyc12g096990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64019156-64021377 transcript_region:SL2.40ch12:64019156..64021377- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- Q6ZJS5_ORYSJ); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00057579g0005.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|0|0|2|0|119; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-30) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q76C99|RF1_ORYSI (e_value=2e-19) Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1;; (*TAIR) AT1G64583.1 (e_value=4e-17) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23987202-23988740 REVERSE LENGTH=512;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00057579g0006.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|0|0|3|0|80 NbS00037469g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|68 NbS00035290g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|255562154|ref|XP_002522085.1| (e_value=3e-52) mads box protein, putative [Ricinus communis];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-41) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=1e-42) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00005709g0009.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|1|1|3|0|604; (*GB) gi|225455149|ref|XP_002269623.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245198 [Vitis vinifera];; (*SWP) sp|Q6C315|ATG13_YARLI (e_value=2e-16) Autophagy-related protein 13 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG13 PE=3 SV=1;; (*TAIR) AT3G49590.1 (e_value=6e-141) | Symbols: | Autophagy-related protein 13 | chr3:18377892-18380104 FORWARD LENGTH=603;; (*ITAG) Solyc03g096790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52577946-52584548 transcript_region:SL2.40ch03:52577946..52584548+ functional_description:"Autophagy-related protein 13 (AHRD V1 *-*- C1GRW0_PARBA); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 "; NbS00060934g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|104; (*GB) gi|94983056|gb|ABF50233.1| (e_value=9e-50) AGAMOUS, partial [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q40885|AG_PETHY (e_value=9e-51) Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1;; (*TAIR) AT4G18960.1 (e_value=9e-43) | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252;; (*ITAG) Solyc02g071730.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00014201g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|110 NbS00012210g0004.1 protein AED:0.16 eAED:0.16 QI:157|1|1|1|1|1|4|340|295; (*GB) gi|3452719|dbj|BAA32518.1| (e_value=0.0) endo-xyloglucan transferase (EXGT) [Nicotiana tabacum];; (*SWP) sp|P93349|XTH_TOBAC (e_value=0.0) Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1;; (*TAIR) AT5G13870.1 (e_value=9e-161) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc01g099630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81570892-81573619 transcript_region:SL2.40ch01:81570892..81573619- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRG4_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase IPR008263 Glycoside hydrolase, family 16, active site "; GO:0016798 NbS00037604g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.4|1|0.25|0|5|0|292; (*GB) gi|297741297|emb|CBI32428.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q1G3M3|Y3918_ARATH (e_value=1e-33) B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=1e-34) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108120.2.1 (e_value=3e-89) genomic_reference:SL2.40ch01 gene_region:87238627-87242710 transcript_region:SL2.40ch01:87238627..87242710+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 *-*- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00056938g0008.1 protein AED:0.06 eAED:0.06 QI:86|1|1|1|1|1|9|246|319; (*GB) gi|224130454|ref|XP_002320841.1| (e_value=5e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|O49354|COQ3_ARATH (e_value=3e-147) Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COQ3 PE=2 SV=2;; (*TAIR) AT2G30920.1 (e_value=2e-148) | Symbols: ATCOQ3, EMB3002, COQ3 | coenzyme Q 3 | chr2:13157409-13159824 REVERSE LENGTH=322;; (*ITAG) Solyc07g055850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61089552-61095708 transcript_region:SL2.40ch07:61089552..61095708- go_terms:GO:0008152,GO:0006744 functional_description:"3-demethylubiquinone-9 3-methyltransferase (AHRD V1 ***- A1B582_PARDP); contains Interpro domain(s) IPR010233 Ubiquinone biosynthesis O-methyltransferase "; GO:0008152,GO:0006744 NbS00056938g0001.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|505; (*GB) gi|359485172|ref|XP_002280055.2| (e_value=3e-122) PREDICTED: LRR receptor-like serine/threonine-protein kinase ERECTA-like [Vitis vinifera];; (*SWP) sp|Q9SSD1|TMM_ARATH (e_value=2e-31) Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1;; (*TAIR) AT2G42800.1 (e_value=1e-109) | Symbols: AtRLP29, RLP29 | receptor like protein 29 | chr2:17808157-17809545 REVERSE LENGTH=462;; (*ITAG) Solyc10g007830.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2039278-2040606 transcript_region:SL2.40ch10:2039278..2040606+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00056938g0009.1 protein AED:0.10 eAED:0.10 QI:1040|0.66|0.71|1|0.5|0.57|7|310|238; (*GB) gi|225446726|ref|XP_002282527.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100252279 [Vitis vinifera];; (*TAIR) AT2G42780.2 (e_value=1e-40) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684). | chr2:17801037-17802646 FORWARD LENGTH=253;; (*ITAG) Solyc07g055830.2.1 (e_value=3e-95) genomic_reference:SL2.40ch07 gene_region:61078107-61080659 transcript_region:SL2.40ch07:61078107..61080659+ go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010684 RNA polymerase II transcription factor SIII, subunit A "; GO:0016021 NbS00009974g0006.1 protein AED:0.00 eAED:0.00 QI:186|1|1|1|0.25|0|5|210|129; (*GB) gi|225441927|ref|XP_002284555.1| (e_value=4e-30) PREDICTED: uncharacterized protein LOC100265785 isoform 2 [Vitis vinifera];; (*TAIR) AT5G04000.1 (e_value=7e-25) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1079305-1079732 REVERSE LENGTH=116;; (*ITAG) Solyc04g016420.2.1 (e_value=5e-59) genomic_reference:SL2.40ch04 gene_region:7227070-7229696 transcript_region:SL2.40ch04:7227070..7229696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009974g0002.1 protein AED:0.02 eAED:0.02 QI:86|0.75|0.8|1|0|0.2|5|1177|241; (*GB) gi|224814374|gb|ACN65408.1| (e_value=2e-126) cytokinin oxidase/dehydrogenase 1 [Solanum tuberosum];; (*SWP) sp|O22213|CKX1_ARATH (e_value=4e-80) Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1;; (*TAIR) AT2G41510.1 (e_value=3e-81) | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314626-17316861 FORWARD LENGTH=575;; (*ITAG) Solyc04g016430.2.1 (e_value=4e-128) genomic_reference:SL2.40ch04 gene_region:7229849-7232636 transcript_region:SL2.40ch04:7229849..7232636- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 **** C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00001283g0004.1 protein AED:0.19 eAED:0.19 QI:197|1|0.88|1|0.75|0.66|9|195|229; (*GB) gi|224057561|ref|XP_002299268.1| (e_value=1e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8CCA0|DCNL4_MOUSE (e_value=1e-37) DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1;; (*TAIR) AT1G15860.2 (e_value=5e-92) | Symbols: | Domain of unknown function (DUF298) | chr1:5455055-5456741 FORWARD LENGTH=227;; (*ITAG) Solyc07g005060.2.1 (e_value=1e-136) genomic_reference:SL2.40ch07 gene_region:104197-109310 transcript_region:SL2.40ch07:104197..109310+ go_terms:GO:0043130 functional_description:"DCN1-like protein 4 (AHRD V1 ***- B6TI85_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00025341g0004.1 protein AED:0.12 eAED:0.15 QI:33|0.33|0.25|1|0.66|0.5|4|0|418; (*GB) gi|255542420|ref|XP_002512273.1| (e_value=8e-66) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|O23530|SNC1_ARATH (e_value=2e-17) Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3;; (*TAIR) AT5G36930.2 (e_value=6e-42) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc02g032200.2.1 (e_value=1e-157) genomic_reference:SL2.40ch02 gene_region:18711443-18715788 transcript_region:SL2.40ch02:18711443..18715788+ go_terms:GO:0030275 functional_description:"Tir-lrr, resistance protein fragment"; GO:0030275 NbS00003549g0016.1 protein AED:0.01 eAED:0.01 QI:179|1|1|1|0|0.5|2|520|163; (*GB) gi|224077328|ref|XP_002305213.1| (e_value=6e-21) high mobility group family [Populus trichocarpa];; (*SWP) sp|Q00423|HMGYA_SOYBN (e_value=9e-14) HMG-Y-related protein A OS=Glycine max PE=2 SV=1;; (*ITAG) Solyc11g011160.1.1 (e_value=5e-54) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:4235818-4237261 transcript_region:SL2.40ch11:4235818..4237261- go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group protein (AHRD V1 *--- Q42461_CANGL); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00003549g0024.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0|0.33|3|0|144; (*GB) gi|357491991|ref|XP_003616283.1| (e_value=2e-45) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q9FHQ1|GDL80_ARATH (e_value=1e-44) GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1;; (*TAIR) AT5G37690.1 (e_value=9e-46) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:14973610-14976115 REVERSE LENGTH=356;; (*ITAG) Solyc11g011110.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4194854-4197731 transcript_region:SL2.40ch11:4194854..4197731- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g37690 (AHRD V1 ***- GDL80_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00003549g0005.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.77|0.88|1|1|9|271|256; (*GB) gi|37783300|gb|AAP41026.1| (e_value=2e-160) NTA15 protein [Nicotiana tabacum];; (*TAIR) AT1G66330.2 (e_value=7e-108) | Symbols: | senescence-associated family protein | chr1:24729880-24732144 REVERSE LENGTH=417;; (*ITAG) Solyc11g011170.1.1 (e_value=5e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4238113-4242599 transcript_region:SL2.40ch11:4238113..4242599- functional_description:"ATA15 protein (AHRD V1 **-- Q5K6K5_ARATH)"; NbS00003549g0023.1 protein AED:0.27 eAED:0.28 QI:0|0.25|0.2|1|1|1|5|191|565; (*GB) gi|147789025|emb|CAN75780.1| (e_value=1e-146) hypothetical protein VITISV_012424 [Vitis vinifera];; (*SWP) sp|Q9M2C8|PP291_ARATH (e_value=1e-122) Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1;; (*TAIR) AT3G61360.1 (e_value=1e-123) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22704630-22706126 REVERSE LENGTH=498;; (*ITAG) Solyc04g071280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:55805628-55807142 transcript_region:SL2.40ch04:55805628..55807142+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS86_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003549g0025.1 protein AED:0.18 eAED:0.18 QI:87|0.83|0.84|1|1|1|13|0|883; (*GB) gi|224079463|ref|XP_002305874.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P51612|XPC_MOUSE (e_value=2e-46) DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2;; (*TAIR) AT5G16630.2 (e_value=0.0) | Symbols: ATRAD4, RAD4 | DNA repair protein Rad4 family | chr5:5455325-5459461 FORWARD LENGTH=865;; (*ITAG) Solyc11g011150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4223823-4233792 transcript_region:SL2.40ch11:4223823..4233792+ go_terms:GO:0005634 functional_description:"DNA repair protein Rad4 family (AHRD V1 ***- D7M868_ARALY); contains Interpro domain(s) IPR004583 DNA repair protein Rad4 "; GO:0005634 NbS00003549g0020.1 protein AED:0.22 eAED:0.22 QI:754|1|1|1|0.6|0.83|6|328|457; (*GB) gi|1087073|gb|AAB34987.1| (e_value=0.0) calmodulin-binding heat-shock protein [Nicotiana tabacum];; (*TAIR) AT5G37710.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14979159-14981400 FORWARD LENGTH=436;; (*ITAG) Solyc11g011120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4202087-4208795 transcript_region:SL2.40ch11:4202087..4208795+ go_terms:GO:0006629,GO:0016042 functional_description:"Calmodulin-binding heat-shock protein (AHRD V1 **-- Q41251_TOBAC); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629,GO:0016042 NbS00010216g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|287; (*GB) gi|57012874|sp|Q9LW48.1|ERF5_NICSY (e_value=3e-131) RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NsERF4;; (*SWP) sp|Q9LW48|ERF5_NICSY (e_value=8e-133) Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=9e-61) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093550.1.1 (e_value=2e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00008746g0006.1 protein AED:0.24 eAED:0.26 QI:91|0.69|0.64|1|0.76|0.85|14|0|578; (*GB) gi|255551279|ref|XP_002516686.1| (e_value=0.0) Protein dom-3, putative [Ricinus communis];; (*SWP) sp|Q8RY73|DOM3Z_ARATH (e_value=0.0) Protein Dom3z homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1;; (*TAIR) AT4G17620.1 (e_value=0.0) | Symbols: | glycine-rich protein | chr4:9822005-9824859 FORWARD LENGTH=544;; (*ITAG) Solyc08g077750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58809674-58817252 transcript_region:SL2.40ch08:58809674..58817252- functional_description:"Protein rai1 (AHRD V1 *--- C8V0J5_EMENI); contains Interpro domain(s) IPR013961 RAI1 like "; NbS00008746g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|303; (*GB) gi|357493403|ref|XP_003616990.1| (e_value=1e-32) Receptor-like protein kinase [Medicago truncatula];; (*SWP) sp|Q9SD62|Y3471_ARATH (e_value=7e-19) Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1;; (*TAIR) AT3G11080.1 (e_value=3e-22) | Symbols: AtRLP35, RLP35 | receptor like protein 35 | chr3:3470481-3473312 FORWARD LENGTH=943;; (*ITAG) Solyc08g077740.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58806102-58808984 transcript_region:SL2.40ch08:58806102..58808984- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00006187g0005.1 protein AED:0.09 eAED:0.09 QI:158|1|1|1|0.5|1|5|382|376; (*GB) gi|359474503|ref|XP_002279644.2| (e_value=1e-123) PREDICTED: uncharacterized protein LOC100243688 [Vitis vinifera];; (*TAIR) AT1G32730.1 (e_value=1e-90) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:11841077-11842956 FORWARD LENGTH=327;; (*ITAG) Solyc08g077450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58516390-58524220 transcript_region:SL2.40ch08:58516390..58524220+ functional_description:"Electron carrier/ iron ion binding protein (AHRD V1 ***- D7KIB9_ARALY)"; NbS00006464g0008.1 protein AED:0.04 eAED:0.04 QI:61|0.85|0.75|1|0.85|0.75|8|72|455; (*GB) gi|2196453|dbj|BAA20425.1| (e_value=0.0) B-type cyclin [Nicotiana tabacum];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=3e-153) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT5G06150.1 (e_value=3e-119) | Symbols: CYC1BAT, CYCB1;2 | Cyclin family protein | chr5:1859542-1861570 REVERSE LENGTH=445;; (*ITAG) Solyc10g080950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61460663-61463015 transcript_region:SL2.40ch10:61460663..61463015+ go_terms:GO:0005634 functional_description:"Cyclin B-like protein (AHRD V1 ***- Q5U8T5_9SOLA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0005634 NbS00006464g0001.1 protein AED:0.20 eAED:0.29 QI:848|0.75|0.8|1|0.25|0.2|5|200|374; (*GB) gi|8928423|sp|Q9ZPN7.1|TBB4_ELEIN (e_value=0.0) RecName: Full=Tubulin beta-4 chain; AltName: Full=Beta-4-tubulin;; (*SWP) sp|Q9ZPN7|TBB4_ELEIN (e_value=0.0) Tubulin beta-4 chain OS=Eleusine indica GN=TUBB4 PE=2 SV=1;; (*TAIR) AT5G12250.1 (e_value=0.0) | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449;; (*ITAG) Solyc10g080940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61453818-61456401 transcript_region:SL2.40ch10:61453818..61456401- go_terms:GO:0005874,GO:0043234,GO:0016021 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HNJ2_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234,GO:0016021 NbS00002791g0002.1 protein AED:0.16 eAED:0.24 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|326200323|gb|ADZ52362.1| (e_value=1e-24) hypothetical chloroplast protein [Asclepias syriaca];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=7e-26) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-20) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=5e-27) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00002791g0110.1 protein AED:0.51 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|87 NbS00002791g0111.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|536 NbS00002791g0114.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|72 NbS00045549g0005.1 protein AED:0.21 eAED:0.21 QI:316|0.86|0.81|1|0.8|0.81|16|0|553; (*GB) gi|224108916|ref|XP_002315014.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|A7T167|GDAP2_NEMVE (e_value=7e-92) Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1;; (*TAIR) AT1G69340.1 (e_value=0.0) | Symbols: | appr-1-p processing enzyme family protein | chr1:26066298-26069644 FORWARD LENGTH=562;; (*ITAG) Solyc04g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:326470-332708 transcript_region:SL2.40ch04:326470..332708+ functional_description:"Appr-1-p processing domain protein (AHRD V1 *--- D5EGM7_AMICL); contains Interpro domain(s) IPR002589 Appr-1-p processing "; NbC24769987g0002.1 protein AED:0.01 eAED:0.01 QI:71|1|0.5|1|1|1|2|0|49; (*GB) gi|297745095|emb|CBI38934.3| (e_value=5e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G17250.1 (e_value=5e-18) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=4e-28) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00030364g0006.1 protein AED:0.04 eAED:0.04 QI:245|0.33|0.75|1|1|1|4|314|329; (*GB) gi|317106597|dbj|BAJ53105.1| (e_value=9e-21) JHL20J20.12 [Jatropha curcas];; (*ITAG) Solyc04g081730.2.1 (e_value=4e-112) genomic_reference:SL2.40ch04 gene_region:63257232-63260000 transcript_region:SL2.40ch04:63257232..63260000- functional_description:"Unknown Protein (AHRD V1)"; NbS00008325g0006.1 protein AED:0.23 eAED:0.27 QI:687|0.58|0.69|1|0.41|0.46|13|40|641; (*GB) gi|356508732|ref|XP_003523108.1| (e_value=2e-175) PREDICTED: transmembrane anterior posterior transformation protein 1 homolog isoform 1 [Glycine max];; (*SWP) sp|F4HVJ3|POD1_ARATH (e_value=7e-133) Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1;; (*TAIR) AT1G67960.1 (e_value=6e-134) | Symbols: | CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE LENGTH=624;; (*ITAG) Solyc06g051430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31337737-31342781 transcript_region:SL2.40ch06:31337737..31342781+ functional_description:"Transmembrane anterior posterior transformation protein 1 homolog (AHRD V1 *--- TAPT1_CHICK); contains Interpro domain(s) IPR008010 Membrane protein,Tapt1/CMV receptor "; NbS00059947g0009.1 protein AED:0.12 eAED:0.12 QI:110|1|1|1|1|0.85|7|681|360; (*GB) gi|255537131|ref|XP_002509632.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G12420.1 (e_value=5e-161) | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226673-4228917 REVERSE LENGTH=441;; (*ITAG) Solyc08g007540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2088002-2091501 transcript_region:SL2.40ch08:2088002..2091501- go_terms:GO:0008152 functional_description:"ACT domain containing protein expressed (AHRD V1 **-- Q10P43_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00059947g0007.1 protein AED:0.01 eAED:0.01 QI:303|1|1|1|1|1|2|283|305; (*GB) gi|225426655|ref|XP_002281296.1| (e_value=3e-96) PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=6e-40) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=6e-71) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc08g007560.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2106197-2107409 transcript_region:SL2.40ch08:2106197..2107409+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00026848g0006.1 protein AED:0.24 eAED:0.27 QI:20|0.42|0.37|1|0.28|0.37|8|1468|417; (*GB) gi|359474462|ref|XP_002276953.2| (e_value=9e-92) PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera];; (*SWP) sp|O82289|SRO1_ARATH (e_value=1e-63) Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana GN=SRO1 PE=1 SV=2;; (*TAIR) AT2G35510.1 (e_value=1e-64) | Symbols: SRO1 | similar to RCD one 1 | chr2:14916898-14919198 REVERSE LENGTH=568;; (*ITAG) Solyc06g066330.2.1 (e_value=7e-173) genomic_reference:SL2.40ch06 gene_region:38004636-38009075 transcript_region:SL2.40ch06:38004636..38009075+ go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q336N3_ORYSJ); contains Interpro domain(s) IPR004170 WWE domain "; GO:0003950 NbS00001358g0005.1 protein AED:0.42 eAED:0.45 QI:0|0.8|0.5|0.83|1|0.83|6|0|156; (*GB) gi|255543829|ref|XP_002512977.1| (e_value=1e-74) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=9e-71) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.1 (e_value=7e-72) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=559;; (*ITAG) Solyc01g110280.2.1 (e_value=6e-76) genomic_reference:SL2.40ch01 gene_region:88754913-88761700 transcript_region:SL2.40ch01:88754913..88761700- go_terms:GO:0016020 functional_description:"DNA-damage-inducible protein F (AHRD V1 **-- B4V9L8_9ACTO); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00057666g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|512; (*GB) gi|350538113|ref|NP_001234327.1| (e_value=0.0) GRAS10 protein [Solanum lycopersicum];; (*SWP) sp|Q9FYR7|SCL8_ARATH (e_value=2e-137) Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1;; (*TAIR) AT5G52510.1 (e_value=2e-138) | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307196-21309118 FORWARD LENGTH=640;; (*ITAG) Solyc03g025170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7005987-7007882 transcript_region:SL2.40ch03:7005987..7007882- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9H3H7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00000093g0004.1 protein AED:0.27 eAED:0.27 QI:367|1|0.75|1|0|0|4|346|92; (*GB) gi|224081363|ref|XP_002306383.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FN42|CLPP2_ARATH (e_value=5e-52) ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1;; (*TAIR) AT5G23140.1 (e_value=4e-53) | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease P7 | chr5:7783811-7784826 FORWARD LENGTH=241;; (*ITAG) Solyc04g009310.2.1 (e_value=9e-58) genomic_reference:SL2.40ch04 gene_region:2760682-2765405 transcript_region:SL2.40ch04:2760682..2765405+ go_terms:GO:0005515 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A5AL82_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515 NbS00000093g0014.1 protein AED:0.00 eAED:0.00 QI:399|1|1|1|1|1|4|358|209; (*GB) gi|359473688|ref|XP_003631348.1| (e_value=2e-107) PREDICTED: helicase SWR1-like [Vitis vinifera];; (*SWP) sp|Q60848|HELLS_MOUSE (e_value=4e-49) Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2;; (*TAIR) AT2G02090.1 (e_value=2e-109) | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:523481-526884 FORWARD LENGTH=763;; (*ITAG) Solyc02g014770.2.1 (e_value=6e-128) genomic_reference:SL2.40ch02 gene_region:9559617-9577970 transcript_region:SL2.40ch02:9559617..9577970+ go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 6 (AHRD V1 **-* CHD6_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00002736g0008.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|9|74|476; (*GB) gi|224058595|ref|XP_002299557.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=0.0) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.1 (e_value=0.0) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=472;; (*ITAG) Solyc08g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60891782-60894197 transcript_region:SL2.40ch08:60891782..60894197+ go_terms:GO:0020037,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0055114 NbS00002736g0002.1 protein AED:0.16 eAED:0.16 QI:24|0.94|0.95|1|0.52|0.5|20|1098|666; (*GB) gi|225426838|ref|XP_002276704.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266763 [Vitis vinifera];; (*SWP) sp|F4JP36|HAP2_ARATH (e_value=0.0) Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1;; (*TAIR) AT4G11720.1 (e_value=0.0) | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063291-7066784 FORWARD LENGTH=705;; (*ITAG) Solyc08g080450.1.1 (e_value=2e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60903285-60911855 transcript_region:SL2.40ch08:60903285..60911855- functional_description:"Generative cell specific-1 (Fragment) (AHRD V1 ***- Q2PGG4_CHLRE); contains Interpro domain(s) IPR018928 Generative cell specific-1, HAP2-GCS1 "; NbS00033435g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|135|153; (*GB) gi|359475298|ref|XP_003631642.1| (e_value=2e-25) PREDICTED: organ-specific protein S2-like [Vitis vinifera];; (*SWP) sp|P17772|OSS2_PEA (e_value=5e-13) Organ-specific protein S2 OS=Pisum sativum PE=2 SV=1;; (*ITAG) Solyc10g009150.2.1 (e_value=2e-36) genomic_reference:SL2.40ch10 gene_region:3151104-3152540 transcript_region:SL2.40ch10:3151104..3152540+ functional_description:"Organ-specific protein S2 (AHRD V1 ***- OSS2_PEA)"; NbS00005902g0020.1 protein AED:0.12 eAED:0.17 QI:54|0.71|0.5|1|0.14|0.25|8|0|308; (*GB) gi|350535549|ref|NP_001234200.1| (e_value=4e-163) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q9LW07|PGLR3_ARATH (e_value=6e-79) Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1;; (*TAIR) AT5G17200.1 (e_value=9e-83) | Symbols: | Pectin lyase-like superfamily protein | chr5:5653524-5655336 REVERSE LENGTH=421;; (*ITAG) Solyc08g060970.2.1 (e_value=5e-167) genomic_reference:SL2.40ch08 gene_region:43354428-43359171 transcript_region:SL2.40ch08:43354428..43359171- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **-* Q9ZPI8_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00005902g0008.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|1|1|4|0|424; (*GB) gi|14349251|dbj|BAB60720.1| (e_value=3e-135) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=1e-124) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21790.1 (e_value=2e-107) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7676927-7678414 REVERSE LENGTH=495;; (*ITAG) Solyc07g043150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54092928-54094376 transcript_region:SL2.40ch07:54092928..54094376+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00005902g0016.1 protein AED:0.26 eAED:0.35 QI:294|0.54|0.5|1|0.81|0.75|12|0|507; (*GB) gi|225430261|ref|XP_002285072.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis vinifera];; (*SWP) sp|Q9LFN6|RH56_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2;; (*TAIR) AT5G11200.3 (e_value=0.0) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3567389-3570686 FORWARD LENGTH=468;; (*ITAG) Solyc08g061000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43548025-43554331 transcript_region:SL2.40ch08:43548025..43554331- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q1HR75_AEDAE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00005902g0021.1 protein AED:0.06 eAED:0.17 QI:560|0|0|1|0|0|2|1053|123; (*GB) gi|342306018|dbj|BAK55745.1| (e_value=2e-28) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q40288|UFOG6_MANES (e_value=3e-20) Anthocyanidin 3-O-glucosyltransferase 6 (Fragment) OS=Manihot esculenta GN=GT6 PE=2 SV=1;; (*TAIR) AT4G15280.1 (e_value=9e-19) | Symbols: UGT71B5 | UDP-glucosyl transferase 71B5 | chr4:8719182-8720618 FORWARD LENGTH=478;; (*ITAG) Solyc07g043120.1.1 (e_value=1e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54031759-54033231 transcript_region:SL2.40ch07:54031759..54033231+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00007508g0009.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|0.66|3|0|136; (*GB) gi|2765240|emb|CAA73333.1| (e_value=9e-54) invertase inhibitor [Nicotiana tabacum];; (*SWP) sp|F4HWQ8|CVIF1_ARATH (e_value=4e-16) Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis thaliana GN=C/VIF1 PE=1 SV=1;; (*TAIR) AT1G47960.1 (e_value=3e-17) | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar inhibitor of fructosidase 1 | chr1:17681954-17683516 REVERSE LENGTH=205;; (*ITAG) Solyc12g099210.1.1 (e_value=5e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64777790-64778953 transcript_region:SL2.40ch12:64777790..64778953+ go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- O49908_TOBAC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00002764g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|297830052|ref|XP_002882908.1| (e_value=7e-60) hypothetical protein ARALYDRAFT_478927 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q22037|ROA1_CAEEL (e_value=7e-18) Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1;; (*TAIR) AT3G15010.2 (e_value=9e-62) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc12g014210.1.1 (e_value=4e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5054503-5055550 transcript_region:SL2.40ch12:5054503..5055550- go_terms:GO:0003688 functional_description:"RNA binding protein (AHRD V1 **-* B6TJJ4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003688 NbS00018537g0004.1 protein AED:0.21 eAED:0.21 QI:317|0.92|0.92|1|0.53|0.5|14|223|609; (*GB) gi|359472541|ref|XP_002274118.2| (e_value=0.0) PREDICTED: probable inactive purple acid phosphatase 1-like [Vitis vinifera];; (*SWP) sp|Q9LMX4|PPA1_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1;; (*TAIR) AT1G13750.1 (e_value=0.0) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4715490-4718091 REVERSE LENGTH=613;; (*ITAG) Solyc05g012260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5546798-5552510 transcript_region:SL2.40ch05:5546798..5552510- go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00020332g0004.1 protein AED:0.14 eAED:0.15 QI:0|0.75|0.4|1|0.75|0.8|5|0|885; (*GB) gi|225458279|ref|XP_002281409.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera];; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc12g089160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62709473-62712424 transcript_region:SL2.40ch12:62709473..62712424- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014218g0006.1 protein AED:0.22 eAED:0.22 QI:52|1|0.66|1|1|1|3|0|489; (*GB) gi|225439825|ref|XP_002274179.1| (e_value=0.0) PREDICTED: protein GPR107-like [Vitis vinifera];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=6e-68) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G18520.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:6145027-6146349 FORWARD LENGTH=440;; (*ITAG) Solyc09g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:641683-644775 transcript_region:SL2.40ch09:641683..644775+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00014218g0007.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|118; (*ITAG) Solyc09g005950.2.1 (e_value=4e-38) genomic_reference:SL2.40ch09 gene_region:657085-658361 transcript_region:SL2.40ch09:657085..658361- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein 1a (AHRD V1 ***- Q00MX6_MALDO); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00020899g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|0.83|0.8|0.5|6|0|811; (*GB) gi|255585740|ref|XP_002533551.1| (e_value=0.0) ubiquitin ligase protein cop1, putative [Ricinus communis];; (*SWP) sp|Q9LJR3|SPA3_ARATH (e_value=0.0) Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1;; (*TAIR) AT3G15354.1 (e_value=0.0) | Symbols: SPA3 | SPA1-related 3 | chr3:5169327-5172480 REVERSE LENGTH=837;; (*ITAG) Solyc07g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62912031-62920927 transcript_region:SL2.40ch07:62912031..62920927- go_terms:GO:0042802 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00014423g0113.1 protein AED:0.27 eAED:0.27 QI:302|0.6|1|1|0.8|1|6|0|349 NbS00014423g0101.1 protein AED:0.36 eAED:0.36 QI:319|1|0.5|1|1|1|2|0|171 NbS00024469g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|1|0.8|5|0|241; (*GB) gi|255545468|ref|XP_002513794.1| (e_value=2e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G44770.1 (e_value=2e-75) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16907834-16909409 REVERSE LENGTH=271;; (*ITAG) Solyc11g030390.1.1 (e_value=9e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:18274663-18277574 transcript_region:SL2.40ch11:18274663..18277574- functional_description:"MADS box interactor-like (AHRD V1 *-*- Q6K819_ORYSJ)"; NbS00025463g0012.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.45|0.90|0.5|0.63|11|0|509; (*GB) gi|255568877|ref|XP_002525409.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8W4S5|Y5371_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g63710 OS=Arabidopsis thaliana GN=At5g63710 PE=2 SV=1;; (*TAIR) AT5G63710.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25499475-25502598 FORWARD LENGTH=614;; (*ITAG) Solyc05g056370.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64848770-64852505 transcript_region:SL2.40ch05:64848770..64852505- go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00028044g0015.1 protein AED:0.39 eAED:0.60 QI:0|0|0|1|1|1|2|0|145; (*GB) gi|357436069|ref|XP_003588310.1| (e_value=1e-51) hypothetical protein MTR_1g005810 [Medicago truncatula];; (*ITAG) Solyc07g017930.1.1 (e_value=3e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00028044g0021.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0.5|2|0|127; (*GB) gi|57013924|ref|YP_173397.1| (e_value=8e-45) hypothetical protein NitaMp051 [Nicotiana tabacum];; (*SWP) sp|P92812|RM02_ORYSJ (e_value=5e-29) 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2;; (*ITAG) ATMG00560.1 (e_value=2e-27) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349; NbS00028044g0012.1 protein AED:0.44 eAED:0.44 QI:43|0|0|0.25|1|0.75|4|0|140; (*ITAG) Solyc00g047180.1.1 (e_value=1e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:13504696-13504953 transcript_region:SL2.40ch00:13504696..13504953- functional_description:"Unknown Protein (AHRD V1)"; NbS00028044g0007.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|83; (*GB) gi|89280682|ref|YP_514899.1| (e_value=1e-30) hypothetical protein LyesCp068 [Solanum lycopersicum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-30) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01000.1 (e_value=2e-16) | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436 FORWARD LENGTH=343;; (*ITAG) Solyc11g021310.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00028044g0019.1 protein AED:0.26 eAED:0.34 QI:0|0|0|1|0|0|5|0|449; (*GB) gi|57013924|ref|YP_173397.1| (e_value=1e-107) hypothetical protein NitaMp051 [Nicotiana tabacum];; (*ITAG) Solyc01g087480.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:74197002-74197268 transcript_region:SL2.40ch01:74197002..74197268+ functional_description:"Photosystem Q(B) protein (AHRD V1 ***- B6VJV1_VITVI)"; NbS00028044g0018.1 protein AED:0.24 eAED:0.28 QI:0|0|0|1|0|0|3|0|204; (*GB) gi|336092607|gb|AEI00925.1| (e_value=1e-96) cytochrome oxidase subunit I, partial [Saracha spinosa];; (*SWP) sp|P14578|COX1_ORYSJ (e_value=3e-94) Cytochrome c oxidase subunit 1 OS=Oryza sativa subsp. japonica GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=6e-95) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=6e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00012822g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|1|4|0|325; (*GB) gi|225459906|ref|XP_002263733.1| (e_value=0.0) PREDICTED: putative fructokinase-5-like [Vitis vinifera];; (*SWP) sp|O82616|SCRK5_ARATH (e_value=1e-180) Putative fructokinase-5 OS=Arabidopsis thaliana GN=At4g10260 PE=2 SV=1;; (*TAIR) AT4G10260.1 (e_value=0.0) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:6371486-6372770 REVERSE LENGTH=324;; (*ITAG) Solyc11g042850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34310825-34313337 transcript_region:SL2.40ch11:34310825..34313337- functional_description:"5-dehydro-2-deoxygluconokinase (AHRD V1 **-- IOLC_GEOTN); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00055875g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.71|1|0.83|0.85|7|0|398; (*GB) gi|255580851|ref|XP_002531245.1| (e_value=2e-177) sodium-bile acid cotransporter, putative [Ricinus communis];; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-54) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT1G78560.1 (e_value=4e-170) | Symbols: | Sodium Bile acid symporter family | chr1:29546846-29548764 REVERSE LENGTH=401;; (*ITAG) Solyc12g005410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:246939-249929 transcript_region:SL2.40ch12:246939..249929- go_terms:GO:0016020 functional_description:"Bile acid sodium symporter family protein (AHRD V1 ***- D7KVC3_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0016020 NbS00020089g0011.1 protein AED:0.35 eAED:0.37 QI:0|0.33|0|1|0.66|0.5|4|0|699; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=2e-60) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=6e-49) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=6e-41) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc03g117930.2.1 (e_value=2e-89) genomic_reference:SL2.40ch03 gene_region:60964198-60971730 transcript_region:SL2.40ch03:60964198..60971730+ go_terms:GO:0046982,GO:0042803 functional_description:"FRIGIDA (AHRD V1 ***- B0YZZ2_ARALP); contains Interpro domain(s) IPR012474 Frigida-like "; GO:0046982,GO:0042803 NbS00020089g0010.1 protein AED:0.24 eAED:0.20 QI:1606|1|0.72|1|1|0.90|11|0|640; (*GB) gi|28268680|dbj|BAC56865.1| (e_value=0.0) respiratory burst oxidase homolog [Nicotiana benthamiana];; (*SWP) sp|Q2HXL0|RBOHC_SOLTU (e_value=0.0) Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2;; (*TAIR) AT5G47910.1 (e_value=0.0) | Symbols: RBOHD, ATRBOHD | respiratory burst oxidase homologue D | chr5:19397585-19401768 FORWARD LENGTH=921;; (*ITAG) Solyc03g117980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61025937-61031702 transcript_region:SL2.40ch03:61025937..61031702+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00045105g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|189; (*GB) gi|225444135|ref|XP_002268361.1| (e_value=9e-77) PREDICTED: reticuline oxidase-like protein [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-26) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT2G34790.1 (e_value=2e-68) | Symbols: MEE23, EDA28 | FAD-binding Berberine family protein | chr2:14673998-14677237 REVERSE LENGTH=532;; (*ITAG) Solyc09g072660.2.1 (e_value=3e-91) genomic_reference:SL2.40ch09 gene_region:60769532-60771866 transcript_region:SL2.40ch09:60769532..60771866- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFP2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00016627g0012.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|1|1|2|0|320; (*GB) gi|224137730|ref|XP_002322631.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g079520.1.1 (e_value=8e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60380417-60382000 transcript_region:SL2.40ch10:60380417..60382000+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00016627g0008.1 protein AED:0.27 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|218; (*GB) gi|113205399|gb|AAU90302.2| (e_value=4e-19) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00016627g0006.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.5|1|1|2|0|147 NbS00016627g0013.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|0.75|1|1|4|0|194; (*GB) gi|359482219|ref|XP_003632733.1| (e_value=2e-67) PREDICTED: mitochondria fission 1 protein-like [Vitis vinifera];; (*TAIR) AT3G57090.1 (e_value=7e-64) | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170;; (*ITAG) Solyc10g079550.1.1 (e_value=9e-81) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60390237-60392568 transcript_region:SL2.40ch10:60390237..60392568- go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00012606g0010.1 protein AED:0.18 eAED:0.18 QI:141|0.5|0.57|1|0.5|0.28|7|0|727; (*GB) gi|14423763|sp|Q9M7J4.1|MFP1_TOBAC (e_value=0.0) RecName: Full=MAR-binding filament-like protein 1-1;; (*SWP) sp|Q9M7J4|MFP1_TOBAC (e_value=0.0) MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1;; (*TAIR) AT3G16000.1 (e_value=1e-102) | Symbols: MFP1 | MAR binding filament-like protein 1 | chr3:5431041-5433613 REVERSE LENGTH=726;; (*ITAG) Solyc03g120230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62741263-62746412 transcript_region:SL2.40ch03:62741263..62746412+ go_terms:GO:0003677 functional_description:"MAR-binding filament-like protein 1 (AHRD V1 **** MFP1_SOLLC); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0003677 NbS00012606g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.5|1|0|0|4|0|191; (*GB) gi|225442669|ref|XP_002284754.1| (e_value=9e-90) PREDICTED: protein SYS1 homolog [Vitis vinifera];; (*SWP) sp|Q55E69|SYS1_DICDI (e_value=5e-42) Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1;; (*TAIR) AT1G79990.1 (e_value=4e-76) | Symbols: | structural molecules | chr1:30084522-30091949 FORWARD LENGTH=1135;; (*ITAG) Solyc03g120240.2.1 (e_value=3e-111) genomic_reference:SL2.40ch03 gene_region:62746908-62751403 transcript_region:SL2.40ch03:62746908..62751403+ go_terms:GO:0005515 functional_description:"SYS1 homolog (AHRD V1 ***- C1BHJ4_ONCMY); contains Interpro domain(s) IPR019185 Integral membrane protein SYS1-related "; GO:0005515 NbS00002127g0004.1 protein AED:0.03 eAED:0.03 QI:700|1|1|1|0.55|0.6|10|646|390; (*GB) gi|297738661|emb|CBI27906.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q69NK8|C3H59_ORYSJ (e_value=9e-167) Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1;; (*TAIR) AT5G56900.1 (e_value=1e-166) | Symbols: | CwfJ-like family protein / zinc finger (CCCH-type) family protein | chr5:23019750-23021850 REVERSE LENGTH=404;; (*ITAG) Solyc12g008870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2199225-2202063 transcript_region:SL2.40ch12:2199225..2202063- go_terms:GO:0008270,GO:0003824 functional_description:"CwfJ domain-containing protein (AHRD V1 **-- B6JX79_SCHJY); contains Interpro domain(s) IPR006768 Protein similar to CwfJ, C-terminal 1 "; GO:0008270,GO:0003824 NbS00002127g0013.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0|1|0.75|0.6|5|0|493; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=0.0) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=0.0) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=0.0) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00002127g0009.1 protein AED:0.08 eAED:0.08 QI:220|1|1|1|1|1|10|348|431; (*GB) gi|21535793|emb|CAC85725.1| (e_value=0.0) putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum];; (*SWP) sp|Q8YXQ7|CARA_NOSS1 (e_value=2e-134) Carbamoyl-phosphate synthase small chain OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=carA PE=3 SV=1;; (*TAIR) AT3G27740.1 (e_value=0.0) | Symbols: CARA | carbamoyl phosphate synthetase A | chr3:10281470-10283792 REVERSE LENGTH=430;; (*ITAG) Solyc03g115630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59330578-59335551 transcript_region:SL2.40ch03:59330578..59335551+ go_terms:GO:0005515,GO:0016301 functional_description:"Carbamoyl-phosphate synthase small chain (AHRD V1 ***- B6TJA4_MAIZE); contains Interpro domain(s) IPR006274 Carbamoyl phosphate synthase, small subunit "; GO:0005515,GO:0016301 NbS00026498g0006.1 protein AED:0.37 eAED:0.37 QI:190|1|1|1|0.8|0.5|6|0|238; (*GB) gi|224087843|ref|XP_002308246.1| (e_value=4e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT3G51730.1 (e_value=2e-57) | Symbols: | saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213;; (*ITAG) Solyc10g085430.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63938424-63944280 transcript_region:SL2.40ch10:63938424..63944280+ go_terms:GO:0006629 functional_description:"Saposin (Fragment) (AHRD V1 *--- B8RJD6_CULTA); contains Interpro domain(s) IPR011001 Saposin-like "; GO:0006629 NbS00057223g0002.1 protein AED:0.44 eAED:0.60 QI:267|0|0.5|1|0|0.5|2|73|80 NbS00026597g0005.1 protein AED:0.26 eAED:0.26 QI:186|1|0.6|1|1|1|5|721|231; (*GB) gi|225469778|ref|XP_002274430.1| (e_value=3e-21) PREDICTED: uncharacterized protein LOC100261101 [Vitis vinifera];; (*TAIR) AT4G38100.1 (e_value=1e-16) | Symbols: | unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17887033-17888177 REVERSE LENGTH=193;; (*ITAG) Solyc11g010480.1.1 (e_value=1e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:3542067-3547598 transcript_region:SL2.40ch11:3542067..3547598+ functional_description:"Threonine endopeptidase (AHRD V1 *--- D7M9J7_ARALY)"; NbS00026597g0007.1 protein AED:0.24 eAED:0.30 QI:620|0|0.5|1|0|0|2|0|67 NbS00020489g0002.1 protein AED:0.07 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|531; (*GB) gi|225441660|ref|XP_002277043.1| (e_value=0.0) PREDICTED: tyrosine-specific transport protein-like [Vitis vinifera];; (*TAIR) AT2G33260.1 (e_value=4e-170) | Symbols: | Tryptophan/tyrosine permease | chr2:14100840-14102252 REVERSE LENGTH=436;; (*ITAG) Solyc10g078470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59610679-59612360 transcript_region:SL2.40ch10:59610679..59612360- go_terms:GO:0005302 functional_description:"Tyrosine-specific transport protein (AHRD V1 *-** D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; GO:0005302 NbS00020489g0012.1 protein AED:0.28 eAED:0.30 QI:198|0.66|0.53|1|0.83|0.76|13|0|392; (*GB) gi|225458860|ref|XP_002283369.1| (e_value=0.0) PREDICTED: chitobiosyldiphosphodolichol beta-mannosyltransferase-like [Vitis vinifera];; (*SWP) sp|P90522|ALG1_DICDI (e_value=5e-69) Chitobiosyldiphosphodolichol beta-mannosyltransferase OS=Dictyostelium discoideum GN=alg1 PE=2 SV=1;; (*TAIR) AT1G16570.1 (e_value=7e-156) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:5670763-5673423 REVERSE LENGTH=465;; (*ITAG) Solyc10g078480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59616092-59622007 transcript_region:SL2.40ch10:59616092..59622007- go_terms:GO:0009058 functional_description:"Chitobiosyldiphosphodolichol beta-mannosyltransferase (AHRD V1 ***- B0WIW8_CULQU); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00020489g0009.1 protein AED:0.36 eAED:0.36 QI:0|1|0.66|1|1|1|3|0|243; (*GB) gi|197723812|gb|ACH72790.1| (e_value=9e-96) small basic intrinsic protein 1-2 [Olea europaea];; (*SWP) sp|Q9ATM2|SIP12_MAIZE (e_value=2e-77) Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1;; (*TAIR) AT3G04090.1 (e_value=8e-66) | Symbols: SIP1;1, SIP1A | small and basic intrinsic protein 1A | chr3:1072340-1074031 REVERSE LENGTH=240;; (*ITAG) Solyc10g078490.1.1 (e_value=1e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59623304-59626910 transcript_region:SL2.40ch10:59623304..59626910- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B0X7V5_CULQU); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00033383g0008.1 protein AED:0.14 eAED:0.15 QI:474|0.5|0.18|0.90|0.4|0.36|11|0|1626; (*GB) gi|359486527|ref|XP_002274774.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240985 [Vitis vinifera];; (*TAIR) AT3G52250.1 (e_value=4e-95) | Symbols: | Duplicated homeodomain-like superfamily protein | chr3:19376629-19383100 FORWARD LENGTH=1656;; (*ITAG) Solyc04g049120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38848674-38858241 transcript_region:SL2.40ch04:38848674..38858241+ go_terms:GO:0003677 functional_description:"Nuclear receptor corepressor 2 (AHRD V1 *-*- Q19LF0_PIG); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00024247g0015.1 protein AED:0.18 eAED:0.18 QI:0|1|0.83|1|0.2|0.5|6|213|183; (*GB) gi|225463402|ref|XP_002273897.1| (e_value=3e-76) PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase isoform 1 [Vitis vinifera];; (*SWP) sp|Q60BH8|PHS_METCA (e_value=2e-23) Putative pterin-4-alpha-carbinolamine dehydratase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=MCA0497 PE=3 SV=1;; (*TAIR) AT1G29810.1 (e_value=5e-70) | Symbols: | Transcriptional coactivator/pterin dehydratase | chr1:10435606-10437406 REVERSE LENGTH=187;; (*ITAG) Solyc02g005510.2.1 (e_value=7e-61) genomic_reference:SL2.40ch02 gene_region:3472102-3474920 transcript_region:SL2.40ch02:3472102..3474920- go_terms:GO:0003713 functional_description:"Pterin-4-alpha-carbinolamine dehydratase (AHRD V1 ***- B6T9C1_MAIZE); contains Interpro domain(s) IPR001533 Transcriptional coactivator/pterin dehydratase "; GO:0003713 NbS00024247g0017.1 protein AED:0.18 eAED:0.24 QI:48|0.8|0.33|1|0.4|0.33|6|0|364; (*GB) gi|255548828|ref|XP_002515470.1| (e_value=8e-162) calcium ion binding protein, putative [Ricinus communis];; (*SWP) sp|Q8VCX5|MICU1_MOUSE (e_value=1e-32) Calcium uptake protein 1, mitochondrial OS=Mus musculus GN=Micu1 PE=2 SV=1;; (*TAIR) AT4G32060.1 (e_value=2e-149) | Symbols: | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498;; (*ITAG) Solyc06g018050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:12748792-12756956 transcript_region:SL2.40ch06:12748792..12756956+ go_terms:GO:0005515 functional_description:"Calcium-binding mitochondrial carrier protein (AHRD V1 **-* CMC_DICDI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00024247g0016.1 protein AED:0.32 eAED:0.35 QI:0|0.4|0.5|0.83|0.4|0.66|6|323|158; (*GB) gi|225463454|ref|XP_002275908.1| (e_value=2e-37) PREDICTED: high mobility group B protein 14 [Vitis vinifera];; (*SWP) sp|O64702|HMG14_ARATH (e_value=1e-19) High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14 PE=2 SV=2;; (*TAIR) AT2G34450.2 (e_value=1e-21) | Symbols: | HMG-box (high mobility group) DNA-binding family protein | chr2:14527918-14529448 REVERSE LENGTH=152; NbS00017884g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|441; (*GB) gi|225449284|ref|XP_002276823.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 85A1-like [Vitis vinifera];; (*SWP) sp|Q9LMF1|U85A3_ARATH (e_value=2e-101) UDP-glycosyltransferase 85A3 OS=Arabidopsis thaliana GN=UGT85A3 PE=2 SV=2;; (*TAIR) AT1G22380.1 (e_value=1e-102) | Symbols: AtUGT85A3, UGT85A3 | UDP-glucosyl transferase 85A3 | chr1:7900522-7902332 REVERSE LENGTH=488;; (*ITAG) Solyc05g052870.2.1 (e_value=2e-156) genomic_reference:SL2.40ch05 gene_region:62198443-62200532 transcript_region:SL2.40ch05:62198443..62200532+ go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **-* C6KI45_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00017884g0103.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|839 NbS00017884g0110.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|239 NbS00017884g0109.1 protein AED:0.28 eAED:0.36 QI:688|0|0.25|0.75|0|0|4|0|148 NbS00017884g0202.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|116 NbS00017884g0212.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.66|0.83|0.6|0.66|6|0|199 NbS00041664g0007.1 protein AED:0.24 eAED:0.24 QI:201|1|1|1|1|1|5|142|298; (*GB) gi|225428320|ref|XP_002282989.1| (e_value=1e-170) PREDICTED: phosphate carrier protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=7e-88) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT2G17270.1 (e_value=8e-156) | Symbols: PHT3;3 | phosphate transporter 3;3 | chr2:7510456-7512118 FORWARD LENGTH=309;; (*ITAG) Solyc03g032030.2.1 (e_value=9e-162) genomic_reference:SL2.40ch03 gene_region:8815863-8821682 transcript_region:SL2.40ch03:8815863..8821682- go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9H646_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00041664g0008.1 protein AED:0.25 eAED:0.25 QI:0|1|0.87|1|0.71|0.75|8|684|487; (*GB) gi|309401693|gb|ADO79932.1| (e_value=0.0) calcium-dependent protein kinase 10 [Nicotiana tabacum];; (*SWP) sp|A5A7I8|CDPK5_SOLTU (e_value=0.0) Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1;; (*TAIR) AT2G17290.1 (e_value=0.0) | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent protein kinase family protein | chr2:7517005-7519239 FORWARD LENGTH=544;; (*ITAG) Solyc01g112250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90084923-90090825 transcript_region:SL2.40ch01:90084923..90090825+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q7Y050_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00025562g0007.1 protein AED:0.19 eAED:0.21 QI:27|0.90|0.66|1|1|1|12|0|1007; (*GB) gi|359478673|ref|XP_002281895.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267264 [Vitis vinifera];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=2e-40) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT3G45630.1 (e_value=0.0) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:16748751-16753190 REVERSE LENGTH=989;; (*ITAG) Solyc06g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:204148-210621 transcript_region:SL2.40ch06:204148..210621+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0003676,GO:0008270,GO:0000166 NbS00025562g0005.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|160 NbS00028122g0009.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|460; (*GB) gi|225457211|ref|XP_002284021.1| (e_value=3e-153) PREDICTED: presenilin-like protein At2g29900-like [Vitis vinifera];; (*SWP) sp|Q9SIK7|PSNB_ARATH (e_value=6e-119) Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1;; (*TAIR) AT2G29900.1 (e_value=5e-120) | Symbols: PS2 | Presenilin-2 | chr2:12749837-12751030 FORWARD LENGTH=397;; (*ITAG) Solyc03g115080.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:58954563-58956937 transcript_region:SL2.40ch03:58954563..58956937- go_terms:GO:0016021 functional_description:"Presenilin family protein (AHRD V1 ***- D7LLE1_ARALY); contains Interpro domain(s) IPR001108 Peptidase A22A, presenilin "; GO:0016021 NbS00028122g0002.1 protein AED:0.04 eAED:0.04 QI:872|0|0.5|1|0|0.5|2|0|669; (*GB) gi|225457209|ref|XP_002280826.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265529 [Vitis vinifera];; (*TAIR) AT5G61010.2 (e_value=4e-162) | Symbols: ATEXO70E2, EXO70E2 | exocyst subunit exo70 family protein E2 | chr5:24554612-24556531 FORWARD LENGTH=639;; (*ITAG) Solyc03g115070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:58950667-58952574 transcript_region:SL2.40ch03:58950667..58952574+ go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_DROME); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00042556g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|357519157|ref|XP_003629867.1| (e_value=2e-47) Interferon-induced GTP-binding protein Mx [Medicago truncatula];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=5e-34) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=4e-35) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc04g072030.1.1 (e_value=1e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56696025-56698052 transcript_region:SL2.40ch04:56696025..56698052+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00042556g0005.1 protein AED:0.29 eAED:0.33 QI:0|0|0|0.66|0|0.33|3|0|127; (*GB) gi|297746445|emb|CBI16501.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55280.1 (e_value=7e-23) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr1:20623099-20624533 REVERSE LENGTH=390;; (*ITAG) Solyc01g005930.2.1 (e_value=8e-58) genomic_reference:SL2.40ch01 gene_region:606558-610602 transcript_region:SL2.40ch01:606558..610602+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013796g0008.1 protein AED:0.13 eAED:0.25 QI:0|0|0|1|0.16|0.28|7|0|753; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=6e-83) disease resistance protein BS2 [Capsicum chacoense];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=7e-45) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-34) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc08g005500.2.1 (e_value=1e-134) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00013796g0007.1 protein AED:0.45 eAED:0.71 QI:0|0|0|1|0|0|2|0|101; (*ITAG) Solyc08g005500.2.1 (e_value=4e-18) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00015419g0005.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.75|0.6|5|174|287; (*GB) gi|2114050|dbj|BAA20076.1| (e_value=0.0) water channel protein [Nicotiana excelsior];; (*SWP) sp|Q08451|PIP1_SOLLC (e_value=0.0) Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT4G00430.1 (e_value=0.0) | Symbols: TMP-C, PIP1;4, PIP1E | plasma membrane intrinsic protein 1;4 | chr4:186143-187531 REVERSE LENGTH=287;; (*ITAG) Solyc08g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00060736g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.6|0.5|1|1|1|6|0|306; (*GB) gi|224084676|ref|XP_002307384.1| (e_value=6e-126) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78150.2 (e_value=3e-104) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29404996-29406341 FORWARD LENGTH=274;; (*ITAG) Solyc04g073970.2.1 (e_value=6e-167) genomic_reference:SL2.40ch04 gene_region:57593055-57595973 transcript_region:SL2.40ch04:57593055..57595973+ functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbS00002124g0007.1 protein AED:0.17 eAED:0.30 QI:496|0|0.5|1|0|0.5|2|1096|198; (*GB) gi|255564699|ref|XP_002523344.1| (e_value=2e-72) protein with unknown function [Ricinus communis];; (*TAIR) AT2G46500.2 (e_value=2e-74) | Symbols: ATPI4K GAMMA 4, UBDK GAMMA 4, PI4K GAMMA 4 | phosphoinositide 4-kinase gamma 4 | chr2:19086741-19088534 REVERSE LENGTH=566;; (*ITAG) Solyc05g050590.2.1 (e_value=9e-116) genomic_reference:SL2.40ch05 gene_region:59890165-59893304 transcript_region:SL2.40ch05:59890165..59893304- go_terms:GO:0043008 functional_description:"Phosphatidylinositol 3-and 4-kinase family (Fragment) (AHRD V1 *--- A6N0X2_ORYSI); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0043008 NbS00015116g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|73|1097; (*GB) gi|359477838|ref|XP_002283031.2| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170-like [Vitis vinifera];; (*SWP) sp|Q9LVP0|Y5639_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1;; (*TAIR) AT5G63930.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25583006-25586392 FORWARD LENGTH=1102;; (*ITAG) Solyc12g098100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64091147-64095079 transcript_region:SL2.40ch12:64091147..64095079+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00053684g0004.1 protein AED:0.24 eAED:0.24 QI:275|0.5|0.66|1|1|1|3|356|117; (*GB) gi|10798750|dbj|BAB16427.1| (e_value=1e-76) NtEIG-E80 [Nicotiana tabacum];; (*TAIR) AT3G54040.1 (e_value=2e-29) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g086710.1.1 (e_value=6e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64793100-64793774 transcript_region:SL2.40ch10:64793100..64793774- functional_description:"PAR-1b protein (AHRD V1 ***- Q43588_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00035023g0007.1 protein AED:0.23 eAED:0.24 QI:0|0.66|0.57|1|0.55|0.57|19|310|919; (*GB) gi|359484002|ref|XP_002272177.2| (e_value=3e-152) PREDICTED: vacuolar protein sorting-associated protein 54-like [Vitis vinifera];; (*SWP) sp|Q9VLC0|VPS54_DROME (e_value=4e-46) Vacuolar protein sorting-associated protein 54 OS=Drosophila melanogaster GN=scat PE=1 SV=1;; (*TAIR) AT4G19490.2 (e_value=2e-127) | Symbols: ATVPS54, VPS54 | VPS54 | chr4:10616017-10622934 FORWARD LENGTH=1034;; (*ITAG) Solyc02g030110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15823759-15852111 transcript_region:SL2.40ch02:15823759..15852111+ go_terms:GO:0042147 functional_description:"Vacuolar protein sorting 54 family protein (AHRD V1 *-*- D3BE08_POLPA); contains Interpro domain(s) IPR012501 Vps54-like "; GO:0042147 NbS00035023g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|255578035|ref|XP_002529888.1| (e_value=1e-64) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G44530.1 (e_value=5e-45) | Symbols: | Subtilase family protein | chr5:17937931-17941193 FORWARD LENGTH=840;; (*ITAG) Solyc02g030120.1.1 (e_value=1e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:15866022-15866429 transcript_region:SL2.40ch02:15866022..15866429- go_terms:GO:0016020 functional_description:"Serine proteinase (Fragment) (AHRD V1 **-- Q43546_LILLO); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0016020 NbS00036995g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|158518418|sp|P83326.2|PMEI_ACTDE (e_value=3e-19) RecName: Full=Pectinesterase inhibitor; AltName: Full=AdPMEI; Short=PMEI; AltName: Full=Pectin methylesterase inhibitor; Flags: Precursor;; (*SWP) sp|P83326|PMEI_ACTDE (e_value=1e-20) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*ITAG) Solyc06g005460.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:479023-479583 transcript_region:SL2.40ch06:479023..479583+ go_terms:GO:0030599 functional_description:"Pectinesterase inhibitor (AHRD V1 ***- PMEI_ACTDE); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00036995g0008.1 protein AED:0.26 eAED:0.26 QI:447|1|1|1|1|1|10|169|694; (*GB) gi|225426757|ref|XP_002282540.1| (e_value=0.0) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=0.0) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.2 (e_value=0.0) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=700;; (*ITAG) Solyc12g056440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47720136-47731546 transcript_region:SL2.40ch12:47720136..47731546+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_DANRE); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0055085 NbS00054063g0003.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|248; (*GB) gi|170676236|gb|ACB30357.1| (e_value=2e-129) putative bZIP transcriptional activator [Capsicum annuum];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=2e-56) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=1e-57) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc06g060490.2.1 (e_value=8e-146) genomic_reference:SL2.40ch06 gene_region:34902984-34908825 transcript_region:SL2.40ch06:34902984..34908825- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00061157g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|225448962|ref|XP_002269306.1| (e_value=5e-88) PREDICTED: uncharacterized protein LOC100258145 [Vitis vinifera];; (*TAIR) AT2G39170.1 (e_value=2e-54) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc11g008310.1.1 (e_value=3e-148) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00004479g0003.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|224140703|ref|XP_002323718.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=3e-121) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=4e-117) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc11g010760.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00004479g0012.1 protein AED:0.01 eAED:0.01 QI:110|1|1|1|1|1|3|1457|410; (*GB) gi|255584043|ref|XP_002532766.1| (e_value=0.0) fructose-1,6-bisphosphatase, putative [Ricinus communis];; (*SWP) sp|P22418|F16P1_SPIOL (e_value=5e-87) Fructose-1,6-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=1 SV=2;; (*TAIR) AT5G64380.1 (e_value=0.0) | Symbols: | Inositol monophosphatase family protein | chr5:25741342-25743024 FORWARD LENGTH=404;; (*ITAG) Solyc01g106010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85756258-85758411 transcript_region:SL2.40ch01:85756258..85758411- go_terms:GO:0005975 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 ***- D3PE46_DEFDS); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0005975 NbS00004479g0011.1 protein AED:0.33 eAED:0.33 QI:123|0.94|0.83|1|0.88|0.77|18|306|681; (*GB) gi|365222862|gb|AEW69783.1| (e_value=4e-129) Hop-interacting protein THI008 [Solanum lycopersicum];; (*SWP) sp|Q8GXL7|GAT24_ARATH (e_value=3e-78) GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2;; (*TAIR) AT3G21175.2 (e_value=2e-81) | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295;; (*ITAG) Solyc01g106030.2.1 (e_value=9e-168) genomic_reference:SL2.40ch01 gene_region:85768997-85775706 transcript_region:SL2.40ch01:85768997..85775706+ go_terms:GO:0008431 functional_description:"Pseudo response regulator (AHRD V1 *--- B9N4C8_POPTR); contains Interpro domain(s) IPR010402 CCT domain "; GO:0008431 NbS00059923g0001.1 protein AED:0.23 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|304; (*GB) gi|255562524|ref|XP_002522268.1| (e_value=9e-82) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G17030.1 (e_value=4e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc03g006010.2.1 (e_value=1e-99) genomic_reference:SL2.40ch03 gene_region:683851-686834 transcript_region:SL2.40ch03:683851..686834+ functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00006736g0001.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.66|1|1|3|0|287; (*GB) gi|2160185|gb|AAB60748.1| (e_value=3e-53) Similar to S. pombe ISP4 (gb|D83992) [Arabidopsis thaliana];; (*SWP) sp|O04514|OPT2_ARATH (e_value=1e-54) Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2;; (*TAIR) AT1G09930.1 (e_value=1e-55) | Symbols: ATOPT2, OPT2 | oligopeptide transporter 2 | chr1:3227490-3230043 REVERSE LENGTH=734;; (*ITAG) Solyc04g076750.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00016390g0013.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|76; (*GB) gi|224062258|ref|XP_002300805.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|O22769|NDUV2_ARATH (e_value=1e-21) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3;; (*TAIR) AT4G02580.1 (e_value=1e-22) | Symbols: | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | chr4:1134586-1136906 FORWARD LENGTH=255;; (*ITAG) Solyc09g065830.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:59698544-59706751 transcript_region:SL2.40ch09:59698544..59706751- go_terms:GO:0008137,GO:0008270 functional_description:"NADH ubiquinone oxidoreductase subunit (AHRD V1 **** Q6V9B3_CHLRE); contains Interpro domain(s) IPR002023 NADH:ubiquinone oxidoreductase, 24 kDa subunit "; GO:0008137,GO:0008270 NbS00016390g0014.1 protein AED:0.41 eAED:0.41 QI:0|0.83|0.57|1|0.83|0.85|7|0|219; (*GB) gi|225437209|ref|XP_002281655.1| (e_value=3e-127) PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Vitis vinifera];; (*SWP) sp|O22769|NDUV2_ARATH (e_value=9e-126) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3;; (*TAIR) AT4G02580.1 (e_value=7e-127) | Symbols: | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | chr4:1134586-1136906 FORWARD LENGTH=255;; (*ITAG) Solyc09g065830.2.1 (e_value=2e-142) genomic_reference:SL2.40ch09 gene_region:59698544-59706751 transcript_region:SL2.40ch09:59698544..59706751- go_terms:GO:0008137,GO:0008270 functional_description:"NADH ubiquinone oxidoreductase subunit (AHRD V1 **** Q6V9B3_CHLRE); contains Interpro domain(s) IPR002023 NADH:ubiquinone oxidoreductase, 24 kDa subunit "; GO:0008137,GO:0008270 NbS00016390g0002.1 protein AED:0.73 eAED:0.75 QI:0|0|0|0.5|1|1|2|0|166 NbS00016390g0016.1 protein AED:0.18 eAED:0.18 QI:237|0.85|0.93|1|0.71|0.86|15|350|590; (*GB) gi|225437197|ref|XP_002275124.1| (e_value=0.0) PREDICTED: guanylate-binding protein 4-like [Vitis vinifera];; (*SWP) sp|Q96PP9|GBP4_HUMAN (e_value=3e-24) Guanylate-binding protein 4 OS=Homo sapiens GN=GBP4 PE=1 SV=2;; (*TAIR) AT2G38840.1 (e_value=0.0) | Symbols: | Guanylate-binding family protein | chr2:16227329-16232115 FORWARD LENGTH=602;; (*ITAG) Solyc09g065810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59678228-59689766 transcript_region:SL2.40ch09:59678228..59689766+ go_terms:GO:0005525 functional_description:"Guanylate-binding family protein (AHRD V1 ***- D7LCC4_ARALY); contains Interpro domain(s) IPR015900 Guanylate-binding protein-like, C-terminal "; GO:0005525 NbS00016390g0011.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.66|1|1|1|6|0|281; (*GB) gi|255559915|ref|XP_002520976.1| (e_value=1e-93) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|O22768|UNE12_ARATH (e_value=6e-77) Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2;; (*TAIR) AT4G02590.2 (e_value=5e-78) | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:1137968-1140306 REVERSE LENGTH=310;; (*ITAG) Solyc09g065820.2.1 (e_value=2e-123) genomic_reference:SL2.40ch09 gene_region:59693000-59697548 transcript_region:SL2.40ch09:59693000..59697548+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00059033g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0.33|0.66|0.5|0.66|3|216|575; (*ITAG) Solyc06g069630.2.1 (e_value=2e-87) genomic_reference:SL2.40ch06 gene_region:39748740-39752000 transcript_region:SL2.40ch06:39748740..39752000- functional_description:"Unknown Protein (AHRD V1)"; NbS00002592g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.5|1|1|1|4|737|367; (*GB) gi|350537551|ref|NP_001234554.1| (e_value=0.0) UDP-glucose:protein transglucosylase-like protein SlUPTG1 [Solanum lycopersicum];; (*SWP) sp|Q9SC19|UPTG1_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2;; (*TAIR) AT3G02230.1 (e_value=0.0) | Symbols: RGP1, ATRGP1 | reversibly glycosylated polypeptide 1 | chr3:415463-417304 FORWARD LENGTH=357;; (*ITAG) Solyc05g012070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5295089-5298245 transcript_region:SL2.40ch05:5295089..5298245- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00002592g0019.1 protein AED:0.25 eAED:0.25 QI:755|0.85|0.87|1|0.42|0.5|8|465|196; (*GB) gi|225423422|ref|XP_002273558.1| (e_value=8e-13) PREDICTED: uncharacterized protein LOC100268093 [Vitis vinifera];; (*ITAG) Solyc05g012060.2.1 (e_value=1e-91) genomic_reference:SL2.40ch05 gene_region:5283244-5294282 transcript_region:SL2.40ch05:5283244..5294282+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0005634 NbS00002592g0005.1 protein AED:0.59 eAED:0.61 QI:0|0|0|0.6|1|1|5|0|175; (*GB) gi|255541984|ref|XP_002512056.1| (e_value=9e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G26330.2 (e_value=5e-25) | Symbols: | DNA binding | chr1:9107625-9113520 FORWARD LENGTH=1194;; (*ITAG) Solyc05g012060.2.1 (e_value=2e-58) genomic_reference:SL2.40ch05 gene_region:5283244-5294282 transcript_region:SL2.40ch05:5283244..5294282+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0005634 NbS00002592g0017.1 protein AED:0.42 eAED:0.70 QI:66|0|0|1|0|0.5|2|0|165; (*ITAG) Solyc05g012060.2.1 (e_value=3e-25) genomic_reference:SL2.40ch05 gene_region:5283244-5294282 transcript_region:SL2.40ch05:5283244..5294282+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0005634 NbS00002592g0104.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|0.66|1|4|392|512 NbS00002592g0201.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|322 NbS00012106g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0.5|1|0|0.5|2|621|79; (*GB) gi|224103407|ref|XP_002313044.1| (e_value=4e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G75250.2 (e_value=9e-30) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28244463-28245453 REVERSE LENGTH=97;; (*ITAG) Solyc01g109690.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88340098-88340346 transcript_region:SL2.40ch01:88340098..88340346- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00012106g0017.1 protein AED:0.22 eAED:0.22 QI:73|1|1|1|0.5|0.66|3|227|193; (*GB) gi|255561120|ref|XP_002521572.1| (e_value=3e-14) late embryogenesis abundant, putative [Ricinus communis];; (*ITAG) Solyc02g085150.2.1 (e_value=1e-31) genomic_reference:SL2.40ch02 gene_region:42714721-42718030 transcript_region:SL2.40ch02:42714721..42718030+ functional_description:"LEA-like protein (AHRD V1 *-*- Q8L5P5_LILLO); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00012106g0018.1 protein AED:0.12 eAED:0.12 QI:1059|1|0.5|1|0|0|2|0|311; (*GB) gi|359476692|ref|XP_002266577.2| (e_value=2e-86) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=1e-50) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT2G18350.1 (e_value=1e-66) | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24 | chr2:7971122-7971910 REVERSE LENGTH=262;; (*ITAG) Solyc02g085160.1.1 (e_value=5e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42719425-42720306 transcript_region:SL2.40ch02:42719425..42720306- go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbS00018960g0010.1 protein AED:0.21 eAED:0.21 QI:338|1|1|1|1|1|4|481|298; (*GB) gi|225449655|ref|XP_002262808.1| (e_value=1e-180) PREDICTED: uncharacterized protein HI_0077 [Vitis vinifera];; (*SWP) sp|P43935|Y077_HAEIN (e_value=4e-24) Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1;; (*TAIR) AT5G04520.1 (e_value=1e-172) | Symbols: | Protein of unknown function DUF455 | chr5:1290012-1291063 REVERSE LENGTH=291;; (*ITAG) Solyc11g007710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1943133-1945777 transcript_region:SL2.40ch11:1943133..1945777+ functional_description:"DUF455 domain-containing protein (AHRD V1 **-- C1G075_PARBD); contains Interpro domain(s) IPR011197 Protein of unknown function UCP012318 "; NbS00018960g0013.1 protein AED:0.12 eAED:0.12 QI:157|1|1|1|0.4|0.5|6|191|343; (*GB) gi|225449647|ref|XP_002262699.1| (e_value=1e-155) PREDICTED: bark storage protein A [Vitis vinifera];; (*SWP) sp|Q07469|BSPA_POPDE (e_value=6e-55) Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1;; (*TAIR) AT4G24350.1 (e_value=2e-139) | Symbols: | Phosphorylase superfamily protein | chr4:12609637-12611328 FORWARD LENGTH=336;; (*ITAG) Solyc11g007730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1965559-1968416 transcript_region:SL2.40ch11:1965559..1968416- go_terms:GO:0009116 functional_description:"MTA/SAH nucleosidase / phosphatase (AHRD V1 *-*- C3G449_BACTU); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0009116 NbS00018960g0012.1 protein AED:0.27 eAED:0.27 QI:164|0.90|0.82|1|0.90|0.95|23|443|646; (*GB) gi|359486892|ref|XP_002262782.2| (e_value=0.0) PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q0WQF7|OPD21_ARATH (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2;; (*TAIR) AT3G52200.1 (e_value=0.0) | Symbols: LTA3 | Dihydrolipoamide acetyltransferase, long form protein | chr3:19360317-19366091 FORWARD LENGTH=637;; (*ITAG) Solyc11g007720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1946450-1963262 transcript_region:SL2.40ch11:1946450..1963262- go_terms:GO:0008152,GO:0045254 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0008152,GO:0045254 NbS00018960g0001.1 protein AED:0.28 eAED:0.28 QI:80|0.66|0.76|1|0.83|0.76|13|458|297; (*GB) gi|224109904|ref|XP_002315350.1| (e_value=3e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5HZ60|MCES2_ARATH (e_value=3e-114) mRNA cap guanine-N7 methyltransferase 2 OS=Arabidopsis thaliana GN=At3g52210 PE=2 SV=1;; (*TAIR) AT3G52210.1 (e_value=2e-115) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:19367035-19369293 FORWARD LENGTH=354;; (*ITAG) Solyc11g007700.1.1 (e_value=9e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1935876-1941661 transcript_region:SL2.40ch11:1935876..1941661- go_terms:GO:0006370 functional_description:"mRNA cap guanine-N7 methyltransferase (AHRD V1 ***- B4LRY5_DROVI); contains Interpro domain(s) IPR004971 mRNA capping enzyme, large subunit "; GO:0006370 NbS00000700g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.55|0.4|0.9|0.77|0.9|10|6|431; (*GB) gi|350537175|ref|NP_001233772.1| (e_value=1e-175) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=1e-117) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G32010.2 (e_value=1e-125) | Symbols: CVL1 | CVP2 like 1 | chr2:13625344-13628081 FORWARD LENGTH=594;; (*ITAG) Solyc06g054010.2.1 (e_value=2e-178) genomic_reference:SL2.40ch06 gene_region:33366025-33371121 transcript_region:SL2.40ch06:33366025..33371121+ go_terms:GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0046030 NbS00057716g0005.1 protein AED:0.01 eAED:0.01 QI:161|1|1|1|0.4|0.33|6|313|122; (*GB) gi|350540670|ref|NP_001234634.1| (e_value=3e-66) autophagy 8f [Solanum lycopersicum];; (*SWP) sp|Q8VYK7|ATG8F_ARATH (e_value=6e-63) Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1;; (*TAIR) AT4G16520.2 (e_value=5e-64) | Symbols: ATG8F | Ubiquitin-like superfamily protein | chr4:9306882-9308113 REVERSE LENGTH=121;; (*ITAG) Solyc08g078820.2.1 (e_value=1e-67) genomic_reference:SL2.40ch08 gene_region:59697047-59702300 transcript_region:SL2.40ch08:59697047..59702300+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00047296g0001.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|0|0.5|2|1308|482; (*GB) gi|224102573|ref|XP_002312730.1| (e_value=4e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=5e-37) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=4e-38) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc09g091710.1.1 (e_value=1e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00047296g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|219; (*GB) gi|255551517|ref|XP_002516804.1| (e_value=4e-29) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=1e-19) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=9e-21) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc01g067010.2.1 (e_value=6e-108) genomic_reference:SL2.40ch01 gene_region:67739472-67740945 transcript_region:SL2.40ch01:67739472..67740945+ functional_description:"F-box family protein (AHRD V1 **-- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00047296g0011.1 protein AED:0.21 eAED:0.21 QI:191|1|0.5|1|1|1|2|0|77; (*GB) gi|350534814|ref|NP_001233905.1| (e_value=2e-21) B2-type cyclin dependent kinase [Solanum lycopersicum];; (*SWP) sp|Q8LF80|CKB21_ARATH (e_value=1e-19) Cyclin-dependent kinase B2-1 OS=Arabidopsis thaliana GN=CDKB2-1 PE=1 SV=2;; (*TAIR) AT1G76540.1 (e_value=9e-21) | Symbols: CDKB2;1 | cyclin-dependent kinase B2;1 | chr1:28720554-28722351 REVERSE LENGTH=313;; (*ITAG) Solyc04g082840.2.1 (e_value=3e-24) genomic_reference:SL2.40ch04 gene_region:63962851-63964812 transcript_region:SL2.40ch04:63962851..63964812- go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** D0P087_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00047296g0013.1 protein AED:0.15 eAED:0.18 QI:0|0|0|1|0|0|3|0|478; (*GB) gi|356546253|ref|XP_003541544.1| (e_value=2e-158) PREDICTED: splicing factor 3B subunit 2-like [Glycine max];; (*SWP) sp|Q13435|SF3B2_HUMAN (e_value=5e-74) Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2;; (*TAIR) AT4G21660.1 (e_value=2e-145) | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584;; (*ITAG) Solyc02g078610.2.1 (e_value=2e-177) genomic_reference:SL2.40ch02 gene_region:37836635-37847031 transcript_region:SL2.40ch02:37836635..37847031+ go_terms:GO:0005515 functional_description:"Splicing factor 3b subunit 2 (AHRD V1 **-- Q80W39_MOUSE); contains Interpro domain(s) IPR007180 Protein of unknown function DUF382 "; GO:0005515 NbS00047296g0014.1 protein AED:0.40 eAED:0.49 QI:0|0|0|1|0|0|2|0|139; (*GB) gi|356549367|ref|XP_003543065.1| (e_value=1e-34) PREDICTED: splicing factor 3B subunit 2-like [Glycine max];; (*TAIR) AT4G21660.1 (e_value=8e-29) | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584;; (*ITAG) Solyc03g006520.2.1 (e_value=3e-41) genomic_reference:SL2.40ch03 gene_region:1094336-1102310 transcript_region:SL2.40ch03:1094336..1102310+ go_terms:GO:0005515 functional_description:"Splicing factor 3b subunit 2 (AHRD V1 **-- Q80W39_MOUSE); contains Interpro domain(s) IPR007180 Protein of unknown function DUF382 "; GO:0005515 NbS00025400g0001.1 protein AED:0.37 eAED:0.43 QI:0|0|0|1|1|1|2|0|79; (*GB) gi|225452346|ref|XP_002274411.1| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100268049 [Vitis vinifera];; (*TAIR) AT5G40460.1 (e_value=5e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202465-16202803 FORWARD LENGTH=112;; (*ITAG) Solyc02g067810.1.1 (e_value=7e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32502384-32502698 transcript_region:SL2.40ch02:32502384..32502698+ functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00017800g0013.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|1|0|0|3|0|310; (*GB) gi|359495774|ref|XP_002266886.2| (e_value=4e-108) PREDICTED: putative metallophosphoesterase At3g03305-like [Vitis vinifera];; (*SWP) sp|Q0WVZ1|Y3330_ARATH (e_value=1e-74) Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana GN=At3g03305 PE=2 SV=1;; (*TAIR) AT3G03305.1 (e_value=9e-76) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:775504-778271 REVERSE LENGTH=743;; (*ITAG) Solyc11g008570.1.1 (e_value=6e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2758333-2763542 transcript_region:SL2.40ch11:2758333..2763542+ go_terms:GO:0016787 functional_description:"Calcineurin-related phosphoesterase-like (AHRD V1 **-- Q5JLV7_ORYSJ); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00017800g0001.1 protein AED:0.42 eAED:0.51 QI:0|0|0|1|1|1|3|0|160; (*GB) gi|298205055|emb|CBI38351.3| (e_value=2e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WVZ1|Y3330_ARATH (e_value=3e-57) Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana GN=At3g03305 PE=2 SV=1;; (*TAIR) AT3G03305.1 (e_value=2e-58) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:775504-778271 REVERSE LENGTH=743;; (*ITAG) Solyc11g008570.1.1 (e_value=6e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2758333-2763542 transcript_region:SL2.40ch11:2758333..2763542+ go_terms:GO:0016787 functional_description:"Calcineurin-related phosphoesterase-like (AHRD V1 **-- Q5JLV7_ORYSJ); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00017800g0009.1 protein AED:0.15 eAED:0.15 QI:84|0.91|0.92|1|0.83|0.76|13|455|380; (*GB) gi|255547476|ref|XP_002514795.1| (e_value=0.0) Protein ariadne-1, putative [Ricinus communis];; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=0.0) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=0.0) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc11g008580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2764823-2775320 transcript_region:SL2.40ch11:2764823..2775320- go_terms:GO:0008270,GO:0005622 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270,GO:0005622 NbS00037651g0001.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|824; (*GB) gi|224068929|ref|XP_002302859.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZVN6|AP180_ARATH (e_value=8e-168) Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1;; (*TAIR) AT1G05020.1 (e_value=6e-169) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:1435384-1437345 REVERSE LENGTH=653;; (*ITAG) Solyc07g049380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56973785-56976016 transcript_region:SL2.40ch07:56973785..56976016- go_terms:GO:0005515 functional_description:"Clathrin assembly protein-like (AHRD V1 *-*- Q8LJJ6_ORYSJ); contains Interpro domain(s) IPR011417 ANTH "; GO:0005515 NbS00037651g0009.1 protein AED:0.03 eAED:0.03 QI:63|0.66|0.5|1|0.66|0.75|4|229|464; (*GB) gi|224109524|ref|XP_002333242.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=3e-98) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT2G05790.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:2199450-2201293 FORWARD LENGTH=472;; (*ITAG) Solyc07g049370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56967150-56969827 transcript_region:SL2.40ch07:56967150..56969827+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00037651g0004.1 protein AED:0.23 eAED:0.27 QI:0|0.33|0.5|1|1|1|4|0|413; (*GB) gi|359485610|ref|XP_002269303.2| (e_value=4e-98) PREDICTED: ATP-dependent helicase rhp16-like [Vitis vinifera];; (*SWP) sp|P31244|RAD16_YEAST (e_value=3e-22) DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1;; (*TAIR) AT1G05120.1 (e_value=4e-85) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc07g052100.2.1 (e_value=7e-156) genomic_reference:SL2.40ch07 gene_region:57966277-57974077 transcript_region:SL2.40ch07:57966277..57974077+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00004968g0008.1 protein AED:0.25 eAED:0.25 QI:64|1|1|1|0|1|2|348|460; (*GB) gi|297745361|emb|CBI40441.3| (e_value=3e-119) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=9e-70) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=7e-71) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc05g049960.2.1 (e_value=1e-174) genomic_reference:SL2.40ch05 gene_region:58951213-58958621 transcript_region:SL2.40ch05:58951213..58958621- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00003670g0004.1 protein AED:0.22 eAED:0.25 QI:138|0.83|0.69|1|1|1|13|0|725; (*GB) gi|156070780|gb|ABU45193.1| (e_value=0.0) unknown [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9CZT4|RPC5_MOUSE (e_value=2e-20) DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus GN=Polr3e PE=1 SV=2;; (*TAIR) AT5G49530.1 (e_value=2e-115) | Symbols: | SIN-like family protein | chr5:20100934-20104242 FORWARD LENGTH=689;; (*ITAG) Solyc08g078600.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59537321-59545380 transcript_region:SL2.40ch08:59537321..59545380- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit RPC5-like protein (AHRD V1 *-*- D0NBY8_PHYIN); contains Interpro domain(s) IPR006886 Sin-like protein conserved region "; GO:0005634 NbS00052235g0008.1 protein AED:0.09 eAED:0.09 QI:76|0.66|0.5|1|1|1|4|0|542; (*GB) gi|350537917|ref|NP_001234829.1| (e_value=0.0) ascorbate oxidase precursor [Solanum lycopersicum];; (*SWP) sp|P24792|ASO_CUCMA (e_value=0.0) L-ascorbate oxidase OS=Cucurbita maxima GN=AAO PE=1 SV=2;; (*TAIR) AT4G39830.1 (e_value=0.0) | Symbols: | Cupredoxin superfamily protein | chr4:18479103-18481184 FORWARD LENGTH=582;; (*ITAG) Solyc04g054690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52198899-52201343 transcript_region:SL2.40ch04:52198899..52201343- go_terms:GO:0005576,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants "; GO:0005576,GO:0055114 NbS00052235g0003.1 protein AED:0.48 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|127 NbS00010545g0005.1 protein AED:0.11 eAED:0.11 QI:198|1|1|1|0.5|0.6|5|370|177; (*GB) gi|255543701|ref|XP_002512913.1| (e_value=3e-95) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G21620.1 (e_value=9e-96) | Symbols: RD2 | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:9248749-9249986 FORWARD LENGTH=187;; (*ITAG) Solyc01g109710.2.1 (e_value=2e-101) genomic_reference:SL2.40ch01 gene_region:88361512-88364324 transcript_region:SL2.40ch01:88361512..88364324- go_terms:GO:0005515 functional_description:"Universal stress protein (AHRD V1 **-- B6SNQ1_MAIZE); contains Interpro domain(s) IPR006016 UspA "; GO:0005515 NbS00010545g0101.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|411 NbS00010545g0203.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|139 NbS00010545g0208.1 protein AED:0.63 eAED:0.63 QI:76|0.5|0|1|0|0.33|3|0|77 NbS00010545g0303.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|169 NbS00046739g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|60459393|gb|AAX20042.1| (e_value=3e-21) proline-rich protein [Capsicum annuum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=9e-14) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=2e-19) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc08g005960.1.1 (e_value=5e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:725778-726188 transcript_region:SL2.40ch08:725778..726188- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00008676g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.71|1|1|1|7|287|464; (*GB) gi|225423919|ref|XP_002282011.1| (e_value=0.0) PREDICTED: CTL-like protein DDB_G0274487 [Vitis vinifera];; (*SWP) sp|Q869R1|CTLHB_DICDI (e_value=3e-30) CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1;; (*TAIR) AT1G25500.2 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr1:8955437-8957793 REVERSE LENGTH=488;; (*ITAG) Solyc05g009670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3865942-3872602 transcript_region:SL2.40ch05:3865942..3872602- functional_description:"Choline transporter-like protein (AHRD V1 **-- Q6EP45_ORYSJ); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00022790g0005.1 protein AED:0.13 eAED:0.13 QI:252|1|1|1|1|1|3|273|183; (*GB) gi|351721561|ref|NP_001238493.1| (e_value=2e-81) uncharacterized protein LOC100305647 precursor [Glycine max];; (*TAIR) AT3G15480.1 (e_value=3e-64) | Symbols: | Protein of unknown function (DUF1218) | chr3:5226489-5227666 REVERSE LENGTH=175;; (*ITAG) Solyc12g013650.1.1 (e_value=1e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4494795-4496351 transcript_region:SL2.40ch12:4494795..4496351+ functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY3_SOLDU); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00042406g0003.1 protein AED:0.14 eAED:0.19 QI:51|0.33|0|0.75|0|0.25|4|0|258; (*GB) gi|224144626|ref|XP_002325354.1| (e_value=1e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYZ9|BAMT_ANTMA (e_value=3e-65) Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1;; (*TAIR) AT5G66430.1 (e_value=1e-68) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:26525410-26526799 REVERSE LENGTH=354;; (*ITAG) Solyc10g061840.1.1 (e_value=9e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:53145227-53146770 transcript_region:SL2.40ch10:53145227..53146770+ go_terms:GO:0008168 functional_description:"Carboxyl methyltransferase 4 (AHRD V1 ***- B0ZB58_HUMLU); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008168 NbS00034005g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|0.5|2|0|291; (*GB) gi|255564619|ref|XP_002523304.1| (e_value=4e-120) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01225.1 (e_value=1e-106) | Symbols: | NC domain-containing protein-related | chr1:96064-97242 FORWARD LENGTH=260;; (*ITAG) Solyc01g096150.2.1 (e_value=2e-145) genomic_reference:SL2.40ch01 gene_region:79016704-79020072 transcript_region:SL2.40ch01:79016704..79020072- go_terms:GO:0006468 functional_description:"NC domain-containing protein (AHRD V1 **-- A6MD14_9ORYZ); contains Interpro domain(s) IPR007053 NC "; GO:0006468 NbS00034005g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|1|1|6|0|498; (*GB) gi|225470958|ref|XP_002264499.1| (e_value=0.0) PREDICTED: aluminum-activated malate transporter 10 [Vitis vinifera];; (*SWP) sp|O23086|ALMTA_ARATH (e_value=6e-173) Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana GN=ALMT10 PE=2 SV=2;; (*TAIR) AT4G00910.1 (e_value=5e-174) | Symbols: | Aluminium activated malate transporter family protein | chr4:389370-391287 REVERSE LENGTH=497;; (*ITAG) Solyc01g096140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79013512-79015884 transcript_region:SL2.40ch01:79013512..79015884+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- C6EP55_SECCE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00043720g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|1|1|4|0|283; (*GB) gi|147834600|emb|CAN69652.1| (e_value=0.0) hypothetical protein VITISV_010537 [Vitis vinifera];; (*SWP) sp|P21616|AVP_VIGRR (e_value=2e-178) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=1e-177) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc01g100390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82195092-82200189 transcript_region:SL2.40ch01:82195092..82200189- go_terms:GO:0016020 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0016020 NbS00043720g0007.1 protein AED:0.29 eAED:0.31 QI:109|0.90|0.91|1|1|1|12|0|390; (*GB) gi|11131769|sp|Q40401.1|CALR_NICPL (e_value=0.0) RecName: Full=Calreticulin; Flags: Precursor;; (*SWP) sp|Q40401|CALR_NICPL (e_value=0.0) Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1;; (*TAIR) AT1G09210.1 (e_value=0.0) | Symbols: CRT1b, AtCRT1b | calreticulin 1b | chr1:2973217-2976655 REVERSE LENGTH=424;; (*ITAG) Solyc01g100380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82188573-82192180 transcript_region:SL2.40ch01:82188573..82192180- go_terms:GO:0005509 functional_description:"Calreticulin 2 calcium-binding protein (AHRD V1 **** A8HMC0_CHLRE); contains Interpro domain(s) IPR009169 Calreticulin "; GO:0005509 NbS00011276g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|353; (*GB) gi|147864762|emb|CAN84062.1| (e_value=8e-130) hypothetical protein VITISV_010661 [Vitis vinifera];; (*SWP) sp|Q9LZ19|PP364_ARATH (e_value=7e-112) Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2;; (*TAIR) AT5G04780.1 (e_value=5e-113) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1384540-1386447 FORWARD LENGTH=635;; (*ITAG) Solyc11g006700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1299179-1301047 transcript_region:SL2.40ch11:1299179..1301047- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011276g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|350534914|ref|NP_001234678.1| (e_value=3e-91) 40S ribosomal protein S17 [Solanum lycopersicum];; (*SWP) sp|P49215|RS17_SOLLC (e_value=1e-92) 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3;; (*TAIR) AT5G04800.4 (e_value=1e-78) | Symbols: | Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141;; (*ITAG) Solyc11g006690.1.1 (e_value=6e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1295503-1295937 transcript_region:SL2.40ch11:1295503..1295937- go_terms:GO:0005840 functional_description:"40S ribosomal protein S17-like protein (AHRD V1 ***- Q3HRX4_SOLTU); contains Interpro domain(s) IPR001210 Ribosomal protein S17e "; GO:0005840 NbS00011276g0009.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|255; (*GB) gi|225464414|ref|XP_002269452.1| (e_value=1e-119) PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Vitis vinifera];; (*SWP) sp|Q9LZ19|PP364_ARATH (e_value=1e-101) Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2;; (*TAIR) AT5G04780.1 (e_value=1e-102) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1384540-1386447 FORWARD LENGTH=635;; (*ITAG) Solyc11g006700.1.1 (e_value=1e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1299179-1301047 transcript_region:SL2.40ch11:1299179..1301047- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011276g0106.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|1|1|5|0|582 NbS00004321g0109.1 protein AED:0.14 eAED:0.14 QI:204|1|0.66|1|1|1|3|255|287 NbS00004321g0110.1 protein AED:0.18 eAED:0.20 QI:0|0.58|0.38|0.84|0.66|0.76|13|0|627 NbS00009218g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|411; (*GB) gi|225433491|ref|XP_002265088.1| (e_value=0.0) PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera];; (*SWP) sp|Q9LIS3|GAE6_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1;; (*TAIR) AT3G23820.1 (e_value=0.0) | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460;; (*ITAG) Solyc09g092330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66806933-66808291 transcript_region:SL2.40ch09:66806933..66808291- go_terms:GO:0042803 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0042803 NbS00016223g0016.1 protein AED:0.04 eAED:0.04 QI:206|1|0.5|1|1|1|2|0|117; (*GB) gi|357473981|ref|XP_003607275.1| (e_value=4e-20) Nucleoporin NUP188-like protein [Medicago truncatula];; (*TAIR) AT4G38760.1 (e_value=5e-18) | Symbols: | Protein of unknown function (DUF3414) | chr4:18085033-18096166 REVERSE LENGTH=1965;; (*ITAG) Solyc11g039890.1.1 (e_value=5e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:26895787-26897270 transcript_region:SL2.40ch11:26895787..26897270- functional_description:"Unknown Protein (AHRD V1)"; NbS00016223g0022.1 protein AED:0.07 eAED:0.08 QI:30|1|0.66|1|0.4|0.33|6|0|786; (*GB) gi|359474871|ref|XP_002277289.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264071 [Vitis vinifera];; (*TAIR) AT4G38760.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3414) | chr4:18085033-18096166 REVERSE LENGTH=1965;; (*ITAG) Solyc11g039870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:26842834-26852925 transcript_region:SL2.40ch11:26842834..26852925- functional_description:"Unknown Protein (AHRD V1)"; NbS00016223g0021.1 protein AED:0.22 eAED:0.23 QI:0|0.71|0.59|0.95|0.61|0.72|22|0|906; (*GB) gi|359474871|ref|XP_002277289.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264071 [Vitis vinifera];; (*TAIR) AT4G38760.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3414) | chr4:18085033-18096166 REVERSE LENGTH=1965;; (*ITAG) Solyc11g039880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:26862407-26888083 transcript_region:SL2.40ch11:26862407..26888083- functional_description:"Nucleoporin NUP188 homolog (AHRD V1 *-*- NU188_HUMAN)"; NbS00016223g0019.1 protein AED:0.36 eAED:0.36 QI:131|1|1|1|0.85|0.87|8|286|258; (*GB) gi|257815608|gb|ACV70142.1| (e_value=2e-118) putative translocon-associated protein alpha subunit [Jatropha curcas];; (*SWP) sp|P45434|SSRA_ARATH (e_value=4e-75) Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3;; (*TAIR) AT2G16595.1 (e_value=2e-82) | Symbols: | Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251;; (*ITAG) Solyc01g111150.2.1 (e_value=5e-144) genomic_reference:SL2.40ch01 gene_region:89273982-89278444 transcript_region:SL2.40ch01:89273982..89278444+ go_terms:GO:0005048 functional_description:"Translocon-associated protein alpha subunit (AHRD V1 ***- B6SRQ1_MAIZE); contains Interpro domain(s) IPR005595 Translocon-associated protein (TRAP), alpha subunit "; GO:0005048 NbS00040874g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|71 NbS00048480g0006.1 protein AED:0.01 eAED:0.01 QI:13|1|1|1|0.5|0.33|3|145|483; (*GB) gi|115304530|gb|ABI93819.1| (e_value=0.0) fatty acid 9/13-hydroperoxide lyase [Solanum pennellii];; (*SWP) sp|Q8W2N5|DES_TOBAC (e_value=0.0) 9-divinyl ether synthase OS=Nicotiana tabacum GN=DES1 PE=1 SV=1;; (*TAIR) AT5G42650.1 (e_value=1e-180) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc01g109150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87965068-87967143 transcript_region:SL2.40ch01:87965068..87967143+ go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00048480g0009.1 protein AED:0.22 eAED:0.22 QI:142|0.66|0.75|1|0.66|0.75|4|436|472; (*GB) gi|37992755|gb|AAR06584.1| (e_value=0.0) glycinamide ribonucleotide synthetase [Nicotiana tabacum];; (*SWP) sp|P52420|PUR2_ARATH (e_value=0.0) Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2;; (*TAIR) AT1G09830.1 (e_value=0.0) | Symbols: | Glycinamide ribonucleotide (GAR) synthetase | chr1:3192783-3194936 REVERSE LENGTH=532;; (*ITAG) Solyc01g103440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83817098-83820931 transcript_region:SL2.40ch01:83817098..83820931+ go_terms:GO:0009113,GO:0005524 functional_description:"Phosphoribosylamine--glycine ligase (AHRD V1 ***- D7KJV0_ARALY); contains Interpro domain(s) IPR000115 Phosphoribosylglycinamide synthetase "; GO:0009113,GO:0005524 NbS00038787g0010.1 protein AED:0.17 eAED:0.22 QI:51|0.85|0.5|1|0.85|0.75|8|0|270; (*GB) gi|302142185|emb|CBI19388.3| (e_value=7e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04472|NAT10_ARATH (e_value=6e-101) Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2;; (*TAIR) AT1G65550.1 (e_value=5e-102) | Symbols: | Xanthine/uracil permease family protein | chr1:24367694-24370800 REVERSE LENGTH=541;; (*ITAG) Solyc04g077720.1.1 (e_value=2e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60241708-60243594 transcript_region:SL2.40ch04:60241708..60243594- go_terms:GO:0022857 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0022857 NbS00038787g0009.1 protein AED:0.07 eAED:0.08 QI:25|0|0|1|0|0|2|0|509; (*GB) gi|302594419|gb|ADL59399.1| (e_value=0.0) HJTR2GH1 protein [Solanum hjertingii];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=2e-108) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-109) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g009290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2735950-2738484 transcript_region:SL2.40ch04:2735950..2738484- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00014285g0004.1 protein AED:0.23 eAED:0.23 QI:250|0.81|0.83|1|0.63|0.66|12|221|470; (*GB) gi|359491904|ref|XP_002270277.2| (e_value=0.0) PREDICTED: carboxypeptidase A2-like [Vitis vinifera];; (*TAIR) AT5G42320.1 (e_value=8e-168) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:16918651-16920845 REVERSE LENGTH=379;; (*ITAG) Solyc04g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63639764-63644861 transcript_region:SL2.40ch04:63639764..63644861- go_terms:GO:0006508 functional_description:"Carboxypeptidase B (AHRD V1 *-*- D3PJJ8_9MAXI); contains Interpro domain(s) IPR000834 Peptidase M14, carboxypeptidase A "; GO:0006508 NbS00050128g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.88|0.8|1|1|1|10|0|562; (*GB) gi|359495962|ref|XP_002267185.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-87) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT4G16650.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr4:9372727-9375910 FORWARD LENGTH=549;; (*ITAG) Solyc08g078540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59490820-59499346 transcript_region:SL2.40ch08:59490820..59499346- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00050128g0009.1 protein AED:0.14 eAED:0.17 QI:10|0.75|0.35|0.94|0.75|0.70|17|0|2064; (*GB) gi|359495964|ref|XP_002267137.2| (e_value=8e-137) PREDICTED: uncharacterized protein LOC100266068 [Vitis vinifera];; (*TAIR) AT4G17330.1 (e_value=1e-90) | Symbols: ATG2484-1, G2484-1 | G2484-1 protein | chr4:9689263-9697172 REVERSE LENGTH=2037;; (*ITAG) Solyc08g078530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59475846-59489783 transcript_region:SL2.40ch08:59475846..59489783+ go_terms:GO:0003723 functional_description:"Agenet domain containing protein expressed (AHRD V1 *-*- Q108Y7_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00035464g0007.1 protein AED:0.13 eAED:0.13 QI:385|1|1|1|0.81|0.91|12|373|623; (*GB) gi|83284015|gb|ABC01915.1| (e_value=0.0) vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum];; (*SWP) sp|P93026|VSR1_ARATH (e_value=0.0) Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2;; (*TAIR) AT3G52850.1 (e_value=0.0) | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623;; (*ITAG) Solyc09g015670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:10672771-10678948 transcript_region:SL2.40ch09:10672771..10678948- go_terms:GO:0005515,GO:0009940 functional_description:"Vacuolar sorting receptor (AHRD V1 **** Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005515,GO:0009940 NbS00035464g0006.1 protein AED:0.25 eAED:0.25 QI:97|0.5|0.71|1|0.83|0.71|7|754|381; (*GB) gi|225439699|ref|XP_002271868.1| (e_value=9e-91) PREDICTED: uncharacterized protein LOC100243025 [Vitis vinifera];; (*TAIR) AT2G38550.1 (e_value=4e-76) | Symbols: | Transmembrane proteins 14C | chr2:16132178-16134229 FORWARD LENGTH=335;; (*ITAG) Solyc09g015650.2.1 (e_value=8e-132) genomic_reference:SL2.40ch09 gene_region:10580626-10587349 transcript_region:SL2.40ch09:10580626..10587349+ go_terms:GO:0016020,GO:0004867 functional_description:"Non-green plastid inner envelope membrane protein (AHRD V1 ***- Q39364_BRAOL); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020,GO:0004867 NbS00035666g0004.1 protein AED:0.05 eAED:0.12 QI:0|0.83|0.57|1|0.66|0.71|7|0|258; (*GB) gi|359479812|ref|XP_002272463.2| (e_value=8e-88) PREDICTED: uncharacterized protein LOC100261429 [Vitis vinifera];; (*TAIR) AT1G03180.1 (e_value=2e-81) | Symbols: | unknown protein; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:773543-775179 FORWARD LENGTH=265;; (*ITAG) Solyc09g065110.2.1 (e_value=3e-137) genomic_reference:SL2.40ch09 gene_region:58574808-58579573 transcript_region:SL2.40ch09:58574808..58579573- functional_description:"Unknown Protein (AHRD V1)"; NbS00010570g0005.1 protein AED:0.15 eAED:0.17 QI:0|1|0.5|1|1|0.75|4|0|310; (*GB) gi|384157481|gb|AFH68208.1| (e_value=8e-112) transcription factor bHLH [Vitis amurensis];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=1e-79) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=1e-80) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc00g050430.2.1 (e_value=4e-148) genomic_reference:SL2.40ch00 gene_region:13663836-13666165 transcript_region:SL2.40ch00:13663836..13666165+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00019082g0001.1 protein AED:0.04 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|193527442|gb|ACF19786.1| (e_value=1e-89) NAC transcription factor [Nicotiana tabacum];; (*TAIR) AT4G36160.1 (e_value=5e-13) | Symbols: ANAC076, VND2, NAC076 | NAC domain containing protein 76 | chr4:17110877-17112891 REVERSE LENGTH=377;; (*ITAG) Solyc07g053680.1.1 (e_value=4e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59444350-59444996 transcript_region:SL2.40ch07:59444350..59444996- go_terms:GO:0045449 functional_description:"NAC domain-containing protein 67 (AHRD V1 ***- B6T3X1_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00002540g0004.1 protein AED:0.10 eAED:0.10 QI:195|0.25|0.6|1|0|0.2|5|171|476; (*GB) gi|17065916|emb|CAC80883.1| (e_value=0.0) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O23976|C76B1_HELTU (e_value=2e-170) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45570.1 (e_value=2e-146) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc02g065220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30965998-30968282 transcript_region:SL2.40ch02:30965998..30968282- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002540g0114.1 protein AED:0.05 eAED:0.05 QI:105|1|1|1|1|1|6|52|406 NbS00002540g0115.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|1|1|6|0|413 NbS00002540g0111.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|207 NbS00002540g0123.1 protein AED:0.37 eAED:0.37 QI:43|0.83|0.71|1|0.66|0.85|7|246|241 NbS00002540g0110.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|115 NbS00022206g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.93|0.81|1|0.93|0.93|16|0|784; (*GB) gi|359482963|ref|XP_003632867.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=5e-133) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT3G14205.1 (e_value=0.0) | Symbols: | Phosphoinositide phosphatase family protein | chr3:4716008-4720524 REVERSE LENGTH=808;; (*ITAG) Solyc03g123520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64397000-64404700 transcript_region:SL2.40ch03:64397000..64404700+ go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- C1H752_PARBA); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00022206g0004.1 protein AED:0.74 eAED:1.00 QI:71|0|0|1|0|0.5|2|0|46 NbS00012941g0012.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|224; (*GB) gi|57013965|ref|YP_173437.1| (e_value=3e-55) hypothetical protein NitaMp099 [Nicotiana tabacum]; NbS00012941g0008.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|109; (*ITAG) Solyc12g035300.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:24234129-24238443 transcript_region:SL2.40ch12:24234129..24238443- functional_description:"Unknown Protein (AHRD V1)"; NbS00012941g0009.1 protein AED:0.16 eAED:0.43 QI:0|0|0|1|0|0|2|0|123; (*GB) gi|57013968|ref|YP_173440.1| (e_value=1e-45) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00012941g0010.1 protein AED:0.46 eAED:0.51 QI:0|0|0|0.5|0|0|2|0|120; (*GB) gi|57013966|ref|YP_173438.1| (e_value=4e-34) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00022723g0005.1 protein AED:0.07 eAED:0.07 QI:135|1|1|1|1|1|4|359|337; (*GB) gi|350536431|ref|NP_001234758.1| (e_value=1e-129) CycD3;3 protein [Solanum lycopersicum];; (*SWP) sp|P42753|CCD31_ARATH (e_value=1e-74) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=9e-76) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc12g088650.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62370474-62372895 transcript_region:SL2.40ch12:62370474..62372895- go_terms:GO:0005634 functional_description:"Cyclin D (AHRD V1 ***- Q8GZU3_9ROSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005634 NbS00019284g0008.1 protein AED:0.24 eAED:0.24 QI:147|0.87|0.77|1|0.87|0.88|9|0|475; (*GB) gi|328461717|gb|AEB15968.1| (e_value=0.0) ABA 8'-hydroxylase CYPA4 variant 1 [Solanum tuberosum];; (*SWP) sp|Q9LJK2|ABAH4_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4 PE=2 SV=2;; (*TAIR) AT3G19270.1 (e_value=0.0) | Symbols: CYP707A4 | cytochrome P450, family 707, subfamily A, polypeptide 4 | chr3:6673885-6676400 REVERSE LENGTH=468;; (*ITAG) Solyc01g108210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87331575-87335081 transcript_region:SL2.40ch01:87331575..87335081+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00005869g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|0.5|2|0|194; (*GB) gi|297744440|emb|CBI37702.3| (e_value=8e-65) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=1e-54) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.1 (e_value=1e-55) | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E | chr4:16836384-16839345 REVERSE LENGTH=710;; (*ITAG) Solyc01g112300.2.1 (e_value=5e-89) genomic_reference:SL2.40ch01 gene_region:90130869-90137919 transcript_region:SL2.40ch01:90130869..90137919+ go_terms:GO:0016020,GO:0055085 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00035163g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.85|0.8|0.93|0.92|0.86|15|198|844; (*GB) gi|297736168|emb|CBI24206.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6DRN3|NOC3L_DANRE (e_value=8e-71) Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2 SV=1;; (*TAIR) AT1G79150.1 (e_value=0.0) | Symbols: | binding | chr1:29772716-29777874 REVERSE LENGTH=830;; (*ITAG) Solyc04g074090.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57694657-57705371 transcript_region:SL2.40ch04:57694657..57705371- go_terms:GO:0005488 functional_description:"Nucleolar complex protein 3 homolog (AHRD V1 ***- NOC3L_DANRE); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; GO:0005488 NbS00004749g0003.1 protein AED:0.24 eAED:0.24 QI:63|1|0.5|1|0|0|2|0|92 NbS00004749g0005.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|0.5|0.66|3|0|80 NbS00027624g0002.1 protein AED:0.01 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|678; (*GB) gi|224099859|ref|XP_002311648.1| (e_value=3e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63978474-63981232 transcript_region:SL2.40ch09:63978474..63981232+ go_terms:GO:0020037,GO:0055114 functional_description:"related to Populus trichocarpa predicted protein XM_002311612.1"; GO:0020037,GO:0055114 NbS00027624g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|989; (*GB) gi|225432830|ref|XP_002279629.1| (e_value=0.0) PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=0.0) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc07g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00031815g0011.1 protein AED:0.00 eAED:0.00 QI:213|1|1|1|1|1|2|335|218; (*GB) gi|365222932|gb|AEW69818.1| (e_value=9e-37) Hop-interacting protein THI121 [Solanum lycopersicum];; (*TAIR) AT4G27310.1 (e_value=7e-32) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc07g053140.2.1 (e_value=4e-55) genomic_reference:SL2.40ch07 gene_region:58916635-58917931 transcript_region:SL2.40ch07:58916635..58917931+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00031815g0012.1 protein AED:0.45 eAED:0.69 QI:0|0.33|0.28|0.85|0.16|0.28|7|0|303; (*GB) gi|42566266|ref|NP_192233.2| (e_value=3e-36) frataxin [Arabidopsis thaliana];; (*SWP) sp|Q9ZR07|FRDA_ARATH (e_value=9e-38) Frataxin, mitochondrial OS=Arabidopsis thaliana GN=FH PE=2 SV=2;; (*TAIR) AT4G03240.1 (e_value=7e-39) | Symbols: ATFH, FH | frataxin homolog | chr4:1423685-1424758 REVERSE LENGTH=187;; (*ITAG) Solyc07g053150.2.1 (e_value=2e-43) genomic_reference:SL2.40ch07 gene_region:58924678-58929922 transcript_region:SL2.40ch07:58924678..58929922- go_terms:GO:0008198,GO:0034986 functional_description:"Protein cyaY (AHRD V1 *-*- A8EZC3_RICCK); contains Interpro domain(s) IPR001794 Frataxin, subgroup "; GO:0008198,GO:0034986 NbS00032430g0003.1 protein AED:0.00 eAED:0.00 QI:196|1|1|1|0|0.33|3|0|44 NbS00032430g0001.1 protein AED:0.30 eAED:0.77 QI:0|0|0.5|1|0|0.5|2|33|73; (*TAIR) AT1G14610.1 (e_value=3e-13) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=8e-15) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00037350g0003.1 protein AED:0.31 eAED:0.31 QI:2|0.5|0.33|1|0|0.33|3|137|177; (*GB) gi|40288318|gb|AAR84197.1| (e_value=5e-55) putative 6 repeat proteinase inhibitor [Nicotiana attenuata];; (*SWP) sp|O49146|IP22_CAPAN (e_value=4e-29) Wound-induced proteinase inhibitor 2 OS=Capsicum annuum GN=PIN2 PE=2 SV=1;; (*ITAG) Solyc11g020990.1.1 (e_value=4e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13167991-13169189 transcript_region:SL2.40ch11:13167991..13169189+ go_terms:GO:0004867 functional_description:"Proteinase inhibitor II (AHRD V1 ***- B3F0C1_TOBAC); contains Interpro domain(s) IPR003465 Proteinase inhibitor I20, Pin2 "; GO:0004867 NbS00031002g0001.1 protein AED:0.29 eAED:0.70 QI:303|0|0|1|1|1|2|0|74; (*GB) gi|42557351|dbj|BAD11071.1| (e_value=6e-28) hin1 like protein [Capsicum chinense];; (*TAIR) AT3G11650.1 (e_value=6e-16) | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676264-3676986 REVERSE LENGTH=240;; (*ITAG) Solyc10g081980.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62218431-62223520 transcript_region:SL2.40ch10:62218431..62223520+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00045530g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.87|0.88|1|0.87|0.77|9|296|997; (*GB) gi|224100929|ref|XP_002312072.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54JE4|ODO1_DICDI (e_value=0.0) 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1;; (*TAIR) AT3G55410.1 (e_value=0.0) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00045530g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.66|1|0|0|6|0|282; (*GB) gi|224100927|ref|XP_002312071.1| (e_value=4e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=8e-30) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT2G39510.1 (e_value=2e-100) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr2:16491358-16493085 REVERSE LENGTH=374;; (*ITAG) Solyc04g011340.2.1 (e_value=1e-153) genomic_reference:SL2.40ch04 gene_region:3817607-3821614 transcript_region:SL2.40ch04:3817607..3821614- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00045530g0007.1 protein AED:0.49 eAED:0.65 QI:78|0.33|0|0.75|1|1|4|0|85; (*GB) gi|18447915|dbj|BAB84323.1| (e_value=9e-54) ras-related protein RAB8-2 [Nicotiana tabacum];; (*SWP) sp|P28186|RAE1C_ARATH (e_value=2e-44) Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1;; (*TAIR) AT3G46060.3 (e_value=1e-45) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216;; (*ITAG) Solyc04g011360.2.1 (e_value=3e-53) genomic_reference:SL2.40ch04 gene_region:3839267-3844110 transcript_region:SL2.40ch04:3839267..3844110- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C362_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00059260g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|359490920|ref|XP_002272298.2| (e_value=5e-120) PREDICTED: uncharacterized protein LOC100264587 [Vitis vinifera];; (*TAIR) AT5G23100.1 (e_value=9e-89) | Symbols: | Protein of unknown function, DUF617 | chr5:7753557-7754390 FORWARD LENGTH=277;; (*ITAG) Solyc03g114390.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00005351g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225430953|ref|XP_002271562.1| (e_value=6e-37) PREDICTED: auxin-induced protein X10A-like [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=2e-25) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18020.1 (e_value=4e-30) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5966305-5966580 REVERSE LENGTH=91;; (*ITAG) Solyc01g110830.2.1 (e_value=7e-52) genomic_reference:SL2.40ch01 gene_region:89123930-89124416 transcript_region:SL2.40ch01:89123930..89124416- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00005351g0008.1 protein AED:0.33 eAED:0.49 QI:0|0|0|0.6|1|1|5|0|163; (*GB) gi|388329752|gb|AFK29267.1| (e_value=1e-32) small auxin-up protein 81 [Solanum lycopersicum];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=2e-28) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=7e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc01g110890.1.1 (e_value=1e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89146268-89146570 transcript_region:SL2.40ch01:89146268..89146570- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00005351g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|424; (*GB) gi|255543769|ref|XP_002512947.1| (e_value=7e-124) ubiquitin-protein ligase, putative [Ricinus communis];; (*TAIR) AT4G39140.5 (e_value=6e-87) | Symbols: | RING/U-box superfamily protein | chr4:18229637-18231282 REVERSE LENGTH=429;; (*ITAG) Solyc01g109910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88514255-88518882 transcript_region:SL2.40ch01:88514255..88518882+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00005351g0001.1 protein AED:0.28 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|180; (*GB) gi|225428392|ref|XP_002283605.1| (e_value=2e-16) PREDICTED: late embryogenesis abundant protein-like [Vitis vinifera];; (*SWP) sp|P21298|DHLE_RAPSA (e_value=3e-14) Late embryogenesis abundant protein OS=Raphanus sativus PE=2 SV=1;; (*TAIR) AT4G39130.1 (e_value=2e-13) | Symbols: | Dehydrin family protein | chr4:18228183-18228844 REVERSE LENGTH=151;; (*ITAG) Solyc01g109920.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:88520599-88521868 transcript_region:SL2.40ch01:88520599..88521868+ go_terms:GO:0009415 functional_description:"Dehydrin (AHRD V1 *-*- Q6YL18_BRAJU); contains Interpro domain(s) IPR000167 Dehydrin "; GO:0009415 NbS00003440g0013.1 protein AED:0.11 eAED:0.11 QI:165|1|1|1|0.8|0.83|6|506|319; (*GB) gi|357520899|ref|XP_003630738.1| (e_value=1e-171) Protein phosphatase 1 regulatory subunit [Medicago truncatula];; (*SWP) sp|Q15435|PP1R7_HUMAN (e_value=1e-51) Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1;; (*TAIR) AT5G19680.1 (e_value=1e-165) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:6649663-6651564 FORWARD LENGTH=328;; (*ITAG) Solyc05g018150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20085823-20099634 transcript_region:SL2.40ch05:20085823..20099634+ go_terms:GO:0005515,GO:0008599 functional_description:"Phosphatase 1 regulatory subunit 7 (AHRD V1 **-* C1C4C3_RANCA); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515,GO:0008599 NbS00003440g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.42|1|0.83|0.71|7|588|1091; (*GB) gi|225445128|ref|XP_002280525.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267936 [Vitis vinifera];; (*TAIR) AT2G20010.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:8637977-8640830 REVERSE LENGTH=834;; (*ITAG) Solyc05g018180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20178597-20183914 transcript_region:SL2.40ch05:20178597..20183914- functional_description:"Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00040169g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|224129508|ref|XP_002328734.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=3e-33) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=3e-34) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g103030.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00061416g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|224066917|ref|XP_002302278.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=3e-20) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT2G13820.1 (e_value=2e-21) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:5774295-5776279 REVERSE LENGTH=169;; (*ITAG) Solyc01g105010.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00051800g0001.1 protein AED:0.01 eAED:0.01 QI:123|0|0.5|1|0|0.5|2|390|360; (*GB) gi|255558716|ref|XP_002520382.1| (e_value=7e-157) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G58800.1 (e_value=2e-128) | Symbols: | unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21748562-21749596 FORWARD LENGTH=344;; (*ITAG) Solyc07g055940.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:61188419-61189444 transcript_region:SL2.40ch07:61188419..61189444+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 ***- Q019U2_OSTTA)"; NbS00051800g0010.1 protein AED:0.12 eAED:0.12 QI:48|1|1|1|1|1|3|312|310; (*GB) gi|255637883|gb|ACU19260.1| (e_value=2e-26) unknown [Glycine max];; (*TAIR) AT2G42840.1 (e_value=2e-24) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306;; (*ITAG) Solyc07g055950.2.1 (e_value=1e-54) genomic_reference:SL2.40ch07 gene_region:61193403-61195377 transcript_region:SL2.40ch07:61193403..61195377- functional_description:"Meiosis 5 (AHRD V1 *-*- B6T5X0_MAIZE)"; NbS00051800g0004.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|4|0|201; (*ITAG) Solyc11g011540.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024853g0025.1 protein AED:0.24 eAED:0.25 QI:0|0.85|0.87|1|0.71|0.87|8|674|324; (*GB) gi|356544872|ref|XP_003540871.1| (e_value=1e-165) PREDICTED: uncharacterized protein LOC100780118 [Glycine max];; (*TAIR) AT5G61670.2 (e_value=2e-162) | Symbols: | Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. | chr5:24783629-24785201 FORWARD LENGTH=307;; (*ITAG) Solyc03g093830.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:48957437-48962293 transcript_region:SL2.40ch03:48957437..48962293+ functional_description:"Chaperone protein dnaJ-like (AHRD V1 **-- Q6H3Y3_ORYSJ)"; NbS00024853g0021.1 protein AED:0.33 eAED:0.33 QI:125|1|1|1|1|1|6|446|290; (*GB) gi|225454880|ref|XP_002278790.1| (e_value=1e-119) PREDICTED: UPF0406 protein C16orf57 homolog [Vitis vinifera];; (*SWP) sp|Q91W78|CP057_MOUSE (e_value=1e-24) UPF0406 protein C16orf57 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G51170.1 (e_value=4e-109) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20793906-20795330 REVERSE LENGTH=285;; (*ITAG) Solyc03g093880.2.1 (e_value=3e-147) genomic_reference:SL2.40ch03 gene_region:48989314-48993935 transcript_region:SL2.40ch03:48989314..48993935+ go_terms:GO:0005515 functional_description:"UPF0406 protein C16orf57 homolog (AHRD V1 *-*- CP057_MOUSE); contains Interpro domain(s) IPR019146 Unidentified protein family UPF0406 "; GO:0005515 NbS00024853g0024.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|267; (*GB) gi|224145547|ref|XP_002325681.1| (e_value=2e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=1e-45) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=2e-48) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc03g093890.2.1 (e_value=4e-89) genomic_reference:SL2.40ch03 gene_region:48994736-48996204 transcript_region:SL2.40ch03:48994736..48996204- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00024853g0028.1 protein AED:0.12 eAED:0.12 QI:0|0.73|0.5|0.87|0.8|0.87|16|0|838; (*GB) gi|359490106|ref|XP_002277737.2| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase pcrA-like [Vitis vinifera];; (*SWP) sp|P64319|PCRA_STAAN (e_value=3e-60) ATP-dependent DNA helicase pcrA OS=Staphylococcus aureus (strain N315) GN=pcrA PE=1 SV=1;; (*TAIR) AT4G25120.1 (e_value=0.0) | Symbols: SRS2, ATSRS2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12890694-12898309 FORWARD LENGTH=1149;; (*ITAG) Solyc03g093850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48970475-48976133 transcript_region:SL2.40ch03:48970475..48976133- go_terms:GO:0005515,GO:0043138 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** B9DMT1_STACT); contains Interpro domain(s) IPR000212 DNA helicase, UvrD/REP type "; GO:0005515,GO:0043138 NbS00024853g0022.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.44|0.66|0.75|0.77|9|0|240; (*GB) gi|255539935|ref|XP_002511032.1| (e_value=1e-86) ATP-dependent DNA helicase pcrA, putative [Ricinus communis];; (*TAIR) AT4G25120.1 (e_value=5e-81) | Symbols: SRS2, ATSRS2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12890694-12898309 FORWARD LENGTH=1149;; (*ITAG) Solyc03g093840.1.1 (e_value=7e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48962675-48968719 transcript_region:SL2.40ch03:48962675..48968719- functional_description:"UvrD helicase (AHRD V1 **-- D9IV51_HORVD)"; NbS00048221g0011.1 protein AED:0.11 eAED:0.11 QI:11|1|1|1|1|1|3|474|171; (*GB) gi|296086532|emb|CBI32121.3| (e_value=7e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G23890.2 (e_value=6e-31) | Symbols: | NHL domain-containing protein | chr1:8438900-8440803 REVERSE LENGTH=400;; (*ITAG) Solyc05g005770.2.1 (e_value=4e-62) genomic_reference:SL2.40ch05 gene_region:586976-590980 transcript_region:SL2.40ch05:586976..590980- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KNK1_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00048221g0009.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|107; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-43) hypothetical protein [Nicotiana tabacum]; NbS00048221g0012.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0.33|3|0|287; (*GB) gi|225424715|ref|XP_002265272.1| (e_value=5e-33) PREDICTED: uncharacterized protein LOC100243227 [Vitis vinifera];; (*TAIR) AT1G23890.2 (e_value=5e-31) | Symbols: | NHL domain-containing protein | chr1:8438900-8440803 REVERSE LENGTH=400;; (*ITAG) Solyc05g005770.2.1 (e_value=1e-116) genomic_reference:SL2.40ch05 gene_region:586976-590980 transcript_region:SL2.40ch05:586976..590980- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KNK1_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00048221g0014.1 protein AED:0.15 eAED:0.16 QI:235|0.83|0.71|1|1|1|7|0|558; (*GB) gi|255560011|ref|XP_002521024.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70280.2 (e_value=9e-179) | Symbols: | NHL domain-containing protein | chr1:26466086-26468471 REVERSE LENGTH=509;; (*ITAG) Solyc05g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:582377-585803 transcript_region:SL2.40ch05:582377..585803+ functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KY00_ARALY); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00048221g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|84 NbS00020339g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.82|0.72|0.94|0.82|0.77|18|306|609; (*GB) gi|297746379|emb|CBI16435.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5V6|TOP6B_ARATH (e_value=0.0) DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1;; (*TAIR) AT3G20780.1 (e_value=0.0) | Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670;; (*ITAG) Solyc01g014490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:13976404-13992385 transcript_region:SL2.40ch01:13976404..13992385- go_terms:GO:0042802 functional_description:"Type II DNA topoisomerase VI subunit B (AHRD V1 ***- C1MLZ8_MICPS); contains Interpro domain(s) IPR015320 DNA topoisomerase VI, subunit B, transducer "; GO:0042802 NbS00032760g0005.1 protein AED:0.33 eAED:0.33 QI:0|0.75|0.8|0.8|0|0|5|324|142; (*GB) gi|224131826|ref|XP_002321188.1| (e_value=1e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07760.2 (e_value=4e-80) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2476723-2477947 FORWARD LENGTH=125;; (*ITAG) Solyc12g006160.1.1 (e_value=5e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:705507-710106 transcript_region:SL2.40ch12:705507..710106- functional_description:"Downward leaf curling protein (AHRD V1 ***- B3XZN9_CUCME); contains Interpro domain(s) IPR011510 Sterile alpha motif homology 2 "; NbS00007943g0004.1 protein AED:0.20 eAED:0.21 QI:0|1|0.83|1|1|1|6|442|666; (*GB) gi|225431541|ref|XP_002275497.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q6LA54|YF48_SCHPO (e_value=4e-47) Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H5.08c PE=1 SV=2;; (*TAIR) AT5G53500.1 (e_value=6e-122) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:21726167-21728524 REVERSE LENGTH=654;; (*ITAG) Solyc11g005710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:566242-568819 transcript_region:SL2.40ch11:566242..568819+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MSZ0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00024298g0005.1 protein AED:0.13 eAED:0.15 QI:51|1|0|1|1|1|2|0|153; (*GB) gi|3551838|gb|AAC63273.1| (e_value=3e-99) SKP1-like protein [Nicotiana clevelandii];; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=2e-80) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=2e-81) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=3e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00007049g0003.1 protein AED:0.31 eAED:0.31 QI:36|1|1|1|1|1|3|368|111; (*GB) gi|12585429|sp|O82703.1|VATG2_TOBAC (e_value=4e-52) RecName: Full=V-type proton ATPase subunit G 2; Short=V-ATPase subunit G 2; AltName: Full=Vacuolar proton pump subunit G 2;; (*SWP) sp|O82703|VATG2_TOBAC (e_value=1e-53) V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1;; (*TAIR) AT3G01390.2 (e_value=1e-33) | Symbols: VMA10, AVMA10 | vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110;; (*ITAG) Solyc05g056020.2.1 (e_value=6e-51) genomic_reference:SL2.40ch05 gene_region:64553061-64555134 transcript_region:SL2.40ch05:64553061..64555134+ go_terms:GO:0008553 functional_description:"V-type proton ATPase subunit G 2 (AHRD V1 **** VATG2_TOBAC); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0008553 NbS00057994g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|225456453|ref|XP_002280749.1| (e_value=5e-50) PREDICTED: uncharacterized protein LOC100245808 [Vitis vinifera];; (*TAIR) AT3G48800.1 (e_value=7e-34) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:18095825-18096661 REVERSE LENGTH=278;; (*ITAG) Solyc03g097760.2.1 (e_value=1e-56) genomic_reference:SL2.40ch03 gene_region:53553289-53554295 transcript_region:SL2.40ch03:53553289..53554295+ functional_description:"Sterile alpha motif domain-containing protein (AHRD V1 ***- D7M2C0_ARALY)"; NbS00057994g0006.1 protein AED:0.30 eAED:0.37 QI:88|0.75|0.8|1|1|1|5|0|190; (*GB) gi|359488447|ref|XP_002274610.2| (e_value=7e-64) PREDICTED: translocon-associated protein subunit beta isoform 2 [Vitis vinifera];; (*TAIR) AT5G14030.4 (e_value=9e-57) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc03g097750.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:53549599-53552392 transcript_region:SL2.40ch03:53549599..53552392+ go_terms:GO:0005515,GO:0005048 functional_description:"Translocon-associated protein subunit beta (AHRD V1 *-*- D3BIF7_POLPA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0005515,GO:0005048 NbS00057994g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|81176294|ref|YP_398371.1| (e_value=2e-23) ribosomal protein L23 [Lactuca sativa];; (*SWP) sp|Q332R6|RK23_LACSA (e_value=6e-25) 50S ribosomal protein L23, chloroplastic OS=Lactuca sativa GN=rpl23-A PE=3 SV=1;; (*ITAG) ATCG01300.1 (e_value=2e-24) | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=93;; (*ITAG) Solyc01g007630.2.1 (e_value=3e-24) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00009397g0014.1 protein AED:0.27 eAED:0.33 QI:0|0.66|0.42|1|0.5|0.57|7|0|337; (*GB) gi|7387809|sp|O49204.1|KAPS_CATRO (e_value=1e-115) RecName: Full=Adenylyl-sulfate kinase, chloroplastic; AltName: Full=ATP adenosine-5'-phosphosulfate 3'-phosphotransferase; AltName: Full=Adenosine-5'-phosphosulfate kinase; Short=APS kinase; Flags: Precursor;; (*SWP) sp|O49204|KAPS_CATRO (e_value=3e-117) Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1;; (*TAIR) AT2G14750.1 (e_value=3e-96) | Symbols: APK, AKN1, ATAKN1, APK1 | APS kinase | chr2:6314128-6315501 FORWARD LENGTH=276;; (*ITAG) Solyc02g064650.2.1 (e_value=2e-148) genomic_reference:SL2.40ch02 gene_region:30310743-30315618 transcript_region:SL2.40ch02:30310743..30315618- go_terms:GO:0004020 functional_description:"Adenylyl-sulfate kinase (AHRD V1 **** C6TL96_SOYBN); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0004020 NbS00009397g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|255554967|ref|XP_002518521.1| (e_value=1e-32) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092400.1.1 (e_value=5e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48050886-48051464 transcript_region:SL2.40ch02:48050886..48051464+ go_terms:GO:0006468 functional_description:"Harpin-induced protein (AHRD V1 ***- B6TNZ1_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; GO:0006468 NbS00009397g0012.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|132; (*GB) gi|359480545|ref|XP_003632487.1| (e_value=7e-24) PREDICTED: uncharacterized protein LOC100855004 [Vitis vinifera];; (*TAIR) AT3G49890.1 (e_value=7e-19) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18499296-18500501 FORWARD LENGTH=220;; (*ITAG) Solyc02g092390.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:48048053-48050432 transcript_region:SL2.40ch02:48048053..48050432+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009397g0010.1 protein AED:0.76 eAED:0.76 QI:0|0|0.5|0.5|0|0.25|4|175|225; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-15) predicted protein [Populus trichocarpa]; NbS00058120g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|0.33|0.75|4|39|109; (*GB) gi|147773557|emb|CAN63274.1| (e_value=2e-43) hypothetical protein VITISV_000398 [Vitis vinifera];; (*TAIR) AT3G06550.1 (e_value=3e-36) | Symbols: | O-acetyltransferase family protein | chr3:2039317-2042664 REVERSE LENGTH=545;; (*ITAG) Solyc01g058270.2.1 (e_value=9e-54) genomic_reference:SL2.40ch01 gene_region:58780420-58787167 transcript_region:SL2.40ch01:58780420..58787167+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbC24156043g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0|2|0|66; (*GB) gi|297745890|emb|CBI15946.3| (e_value=4e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07210.1 (e_value=2e-34) | Symbols: | Ribosomal protein S18 | chr1:2215320-2216668 FORWARD LENGTH=261;; (*ITAG) Solyc10g084700.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63454624-63456888 transcript_region:SL2.40ch10:63454624..63456888+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 family (AHRD V1 ***- D7KH00_ARALY); contains Interpro domain(s) IPR001648 Ribosomal protein S18 "; GO:0005840 NbS00060203g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|314; (*GB) gi|12003376|gb|AAG43545.1|AF211527_1 (e_value=6e-106) Avr9/Cf-9 rapidly elicited protein 1 [Nicotiana tabacum];; (*SWP) sp|O80341|EF102_ARATH (e_value=4e-41) Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G47230.1 (e_value=3e-42) | Symbols: ERF5, ATERF-5, ATERF5 | ethylene responsive element binding factor 5 | chr5:19180072-19180974 FORWARD LENGTH=300;; (*ITAG) Solyc08g078190.1.1 (e_value=7e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59192455-59193423 transcript_region:SL2.40ch08:59192455..59193423+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00010222g0004.1 protein AED:0.23 eAED:0.47 QI:24|0|0|1|0|0.2|5|0|271; (*ITAG) Solyc01g059760.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010222g0006.1 protein AED:0.50 eAED:0.54 QI:0|0|0|1|0|0|2|0|191; (*ITAG) Solyc08g016290.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00010222g0005.1 protein AED:0.47 eAED:0.60 QI:0|0|0|1|0|0|2|0|68 NbS00020473g0001.1 protein AED:0.17 eAED:0.17 QI:27|-1|0|1|-1|1|1|0|180; (*GB) gi|380706600|gb|AFD97530.1| (e_value=7e-54) BAP1 [Vitis vinifera];; (*SWP) sp|Q58FX0|BAP2_ARATH (e_value=3e-29) BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1;; (*TAIR) AT2G45760.1 (e_value=2e-30) | Symbols: BAP2, BAL | BON association protein 2 | chr2:18847125-18847748 REVERSE LENGTH=207;; (*ITAG) Solyc01g091590.2.1 (e_value=5e-89) genomic_reference:SL2.40ch01 gene_region:76943808-76944592 transcript_region:SL2.40ch01:76943808..76944592+ go_terms:GO:0005515,GO:0005543 functional_description:"SRC2 protein (AHRD V1 ***- A7XAJ8_9CONI); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; GO:0005515,GO:0005543 NbS00020473g0002.1 protein AED:0.15 eAED:0.15 QI:254|0.77|0.9|0.9|0.88|0.8|10|233|379; (*GB) gi|334683129|emb|CBX87930.1| (e_value=0.0) equilibrative nucleoside transporter 3 [Solanum tuberosum];; (*TAIR) AT4G05120.1 (e_value=4e-164) | Symbols: ENT3, FUR1, ATENT3 | Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418;; (*ITAG) Solyc02g014430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:7760649-7762916 transcript_region:SL2.40ch02:7760649..7762916- go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H200_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0005337 NbC25370632g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|225428229|ref|XP_002279305.1| (e_value=9e-53) PREDICTED: uncharacterized protein LOC100267542 [Vitis vinifera];; (*TAIR) AT1G29510.1 (e_value=7e-40) | Symbols: SAUR68 | SAUR-like auxin-responsive protein family | chr1:10322683-10323114 FORWARD LENGTH=143;; (*ITAG) Solyc10g052550.1.1 (e_value=3e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:48392221-48392655 transcript_region:SL2.40ch10:48392221..48392655- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00051104g0003.1 protein AED:0.15 eAED:0.15 QI:81|0.66|0.5|1|1|1|4|0|479; (*GB) gi|224145473|ref|XP_002325655.1| (e_value=5e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BX32|SLX1_MOUSE (e_value=1e-33) Structure-specific endonuclease subunit SLX1 OS=Mus musculus GN=Slx1b PE=2 SV=1;; (*TAIR) AT2G30350.2 (e_value=2e-82) | Symbols: | Excinuclease ABC, C subunit, N-terminal | chr2:12934237-12935742 REVERSE LENGTH=368;; (*ITAG) Solyc09g031790.2.1 (e_value=3e-114) genomic_reference:SL2.40ch09 gene_region:23880678-23882417 transcript_region:SL2.40ch09:23880678..23882417- go_terms:GO:0005622 functional_description:"Structure-specific endonuclease subunit slx1 (AHRD V1 *-*- D3PJZ8_9MAXI); contains Interpro domain(s) IPR000305 Excinuclease ABC, C subunit, N-terminal "; GO:0005622 NbS00005234g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|0.5|0.33|3|0|105; (*ITAG) Solyc07g055110.2.1 (e_value=2e-14) genomic_reference:SL2.40ch07 gene_region:60564252-60565631 transcript_region:SL2.40ch07:60564252..60565631- functional_description:"Unknown Protein (AHRD V1)"; NbC24951450g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|108 NbS00006235g0009.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0.33|0.5|4|0|724; (*GB) gi|242055561|ref|XP_002456926.1| (e_value=4e-127) hypothetical protein SORBIDRAFT_03g045670 [Sorghum bicolor];; (*SWP) sp|P52835|F3ST_FLABI (e_value=5e-92) Flavonol 3-sulfotransferase OS=Flaveria bidentis PE=2 SV=1;; (*TAIR) AT5G07010.1 (e_value=1e-89) | Symbols: ATST2A, ST2A | sulfotransferase 2A | chr5:2174960-2176039 REVERSE LENGTH=359;; (*ITAG) Solyc03g114800.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58740135-58741085 transcript_region:SL2.40ch03:58740135..58741085- go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7LZW5_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00040524g0006.1 protein AED:0.37 eAED:0.37 QI:103|0.66|1|1|0.33|0.25|4|359|152; (*GB) gi|255543302|ref|XP_002512714.1| (e_value=2e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G47870.1 (e_value=1e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19384555-19385808 REVERSE LENGTH=199;; (*ITAG) Solyc11g040110.1.1 (e_value=7e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28511470-28516022 transcript_region:SL2.40ch11:28511470..28516022- functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- B6ST86_MAIZE)"; NbS00026300g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|1|1|3|0|541; (*GB) gi|357517451|ref|XP_003629014.1| (e_value=0.0) GMC-type oxidoreductase, putative [Medicago truncatula];; (*SWP) sp|O65709|FAO4A_ARATH (e_value=0.0) Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=2 SV=2;; (*TAIR) AT4G19380.1 (e_value=0.0) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:10568427-10572288 REVERSE LENGTH=726;; (*ITAG) Solyc08g075240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56537027-56542613 transcript_region:SL2.40ch08:56537027..56542613+ go_terms:GO:0009055,GO:0046577 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00026300g0006.1 protein AED:0.17 eAED:0.17 QI:244|1|0.8|1|0.25|0.4|5|0|259; (*GB) gi|225427627|ref|XP_002272494.1| (e_value=4e-84) PREDICTED: uncharacterized protein LOC100266665 [Vitis vinifera];; (*TAIR) AT4G19390.1 (e_value=2e-77) | Symbols: | Uncharacterised protein family (UPF0114) | chr4:10574903-10576355 REVERSE LENGTH=273;; (*ITAG) Solyc08g075280.2.1 (e_value=5e-138) genomic_reference:SL2.40ch08 gene_region:56546932-56549850 transcript_region:SL2.40ch08:56546932..56549850+ functional_description:"Uncharacterized membrane protein (AHRD V1 *-*- A5GLU3_SYNPW); contains Interpro domain(s) IPR005134 Uncharacterised protein family UPF0114 "; NbS00038795g0005.1 protein AED:0.04 eAED:0.06 QI:0|0.2|0|1|0.4|0.16|6|0|1113; (*GB) gi|359492322|ref|XP_002278001.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Vitis vinifera];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=0.0) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc04g064940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55209281-55212860 transcript_region:SL2.40ch04:55209281..55212860- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014503g0004.1 protein AED:0.29 eAED:0.29 QI:240|1|0.8|1|0.75|0.4|5|0|429; (*GB) gi|225460668|ref|XP_002267914.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera];; (*SWP) sp|Q75HX5|TLP8_ORYSJ (e_value=0.0) Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1;; (*TAIR) AT1G76900.2 (e_value=0.0) | Symbols: AtTLP1, TLP1 | tubby like protein 1 | chr1:28882741-28884377 FORWARD LENGTH=455;; (*ITAG) Solyc04g071440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56014601-56018182 transcript_region:SL2.40ch04:56014601..56018182+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 8 (AHRD V1 ***- TLP8_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00022314g0007.1 protein AED:0.60 eAED:0.64 QI:0|0.42|0.37|0.75|1|1|8|0|249; (*GB) gi|225428065|ref|XP_002279626.1| (e_value=2e-84) PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera];; (*SWP) sp|Q54CU7|TPC2L_DICDI (e_value=3e-36) Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1;; (*TAIR) AT2G20930.1 (e_value=2e-80) | Symbols: | SNARE-like superfamily protein | chr2:9000790-9001656 REVERSE LENGTH=140;; (*ITAG) Solyc01g111690.2.1 (e_value=2e-89) genomic_reference:SL2.40ch01 gene_region:89642932-89646885 transcript_region:SL2.40ch01:89642932..89646885+ go_terms:GO:0006810,GO:0005622 functional_description:"Trafficking protein particle complex subunit 2-like protein (AHRD V1 ***- D0N1W2_PHYIN); contains Interpro domain(s) IPR006722 Sedlin "; GO:0006810,GO:0005622 NbS00022314g0010.1 protein AED:0.15 eAED:0.15 QI:160|0.8|0.68|1|0.8|0.68|16|195|904; (*GB) gi|3914467|sp|P93768.1|PSMD3_TOBAC (e_value=0.0) RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 3; Short=26S proteasome subunit S3; AltName: Full=26S proteasome regulatory subunit RPN3; AltName: Full=Nuclear antigen 21D7;; (*SWP) sp|P93768|PSMD3_TOBAC (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1;; (*TAIR) AT1G75990.1 (e_value=0.0) | Symbols: | PAM domain (PCI/PINT associated module) protein | chr1:28524623-28526718 REVERSE LENGTH=487;; (*ITAG) Solyc01g111710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89651034-89655488 transcript_region:SL2.40ch01:89651034..89655488- go_terms:GO:0005515 functional_description:"26S proteasome non-ATPase regulatory subunit 3 (AHRD V1 ***- B6TBG8_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515 NbS00022314g0015.1 protein AED:0.23 eAED:0.37 QI:0|0|0|0.6|0.75|0.4|5|0|457; (*GB) gi|297744586|emb|CBI37848.3| (e_value=2e-38) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g111720.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:89656389-89663337 transcript_region:SL2.40ch01:89656389..89663337- go_terms:GO:0006413 functional_description:"Translation initiation factor IF-3 (AHRD V1 *-*- D4YMH3_9MICO); contains Interpro domain(s) IPR001288 Translation initiation factor 3 "; GO:0006413 NbS00041031g0005.1 protein AED:0.25 eAED:0.25 QI:172|0.62|0.66|1|0.37|0.66|9|874|864; (*GB) gi|356557709|ref|XP_003547155.1| (e_value=5e-48) PREDICTED: zinc finger CCCH domain-containing protein 27-like [Glycine max];; (*SWP) sp|Q84VG7|C3H27_ARATH (e_value=3e-21) Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis thaliana GN=FES1 PE=2 SV=2;; (*TAIR) AT2G33835.1 (e_value=2e-22) | Symbols: FES1 | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:14312145-14314566 REVERSE LENGTH=587;; (*ITAG) Solyc03g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:943458-946178 transcript_region:SL2.40ch03:943458..946178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 27 (AHRD V1 *-*- C3H27_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00004921g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|0.66|0.5|0.66|3|2933|102; (*GB) gi|224109984|ref|XP_002315376.1| (e_value=6e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G51560.1 (e_value=2e-29) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr1:19119900-19121859 REVERSE LENGTH=392;; (*ITAG) Solyc06g063290.2.1 (e_value=5e-32) genomic_reference:SL2.40ch06 gene_region:36385129-36391488 transcript_region:SL2.40ch06:36385129..36391488+ go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 ***- D8DKZ3_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00004921g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-13) hypothetical protein [Nicotiana tabacum]; NbS00004921g0014.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.57|0.85|1|1|7|0|392; (*GB) gi|255561818|ref|XP_002521918.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LK31|Y3272_ARATH (e_value=5e-158) Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1;; (*TAIR) AT1G51540.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115702-19117381 FORWARD LENGTH=415;; (*ITAG) Solyc03g123910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64662295-64666735 transcript_region:SL2.40ch03:64662295..64666735- go_terms:GO:0005515 functional_description:"Kelch-like protein 20 (AHRD V1 ***- KLH20_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00004921g0001.1 protein AED:0.35 eAED:0.37 QI:0|0|0.5|1|0|0.5|2|355|84; (*GB) gi|225470664|ref|XP_002268964.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100260603 isoform 1 [Vitis vinifera];; (*TAIR) AT4G30010.1 (e_value=1e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14672947-14673219 FORWARD LENGTH=90;; (*ITAG) Solyc06g063310.1.1 (e_value=8e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36402097-36402360 transcript_region:SL2.40ch06:36402097..36402360- functional_description:"Fiber protein Fb15 (Fragment) (AHRD V1 ***- B4UW72_ARAHY)"; NbS00004921g0019.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.6|1|0.75|1|5|0|538; (*GB) gi|255544532|ref|XP_002513327.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=0.0) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=0.0) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc03g123920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64668191-64674499 transcript_region:SL2.40ch03:64668191..64674499- functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00055340g0002.1 protein AED:0.25 eAED:0.25 QI:639|1|0.5|1|0|0|2|0|171; (*GB) gi|255586451|ref|XP_002533870.1| (e_value=1e-50) Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=2e-20) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=1e-21) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g047950.1.1 (e_value=3e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56497775-56499412 transcript_region:SL2.40ch07:56497775..56499412+ go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00055340g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|224131790|ref|XP_002321179.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=0.0) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=0.0) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g047950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56497775-56499412 transcript_region:SL2.40ch07:56497775..56499412+ go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00020007g0004.1 protein AED:0.32 eAED:0.38 QI:0|0.5|0|1|0|0.33|3|0|332; (*GB) gi|359482026|ref|XP_002275955.2| (e_value=1e-69) PREDICTED: B3 domain-containing protein At2g36080-like [Vitis vinifera];; (*SWP) sp|Q8GYJ2|Y2608_ARATH (e_value=2e-61) B3 domain-containing protein At2g36080 OS=Arabidopsis thaliana GN=ARF31 PE=2 SV=1;; (*TAIR) AT2G36080.1 (e_value=1e-62) | Symbols: | AP2/B3-like transcriptional factor family protein | chr2:15148612-15151411 REVERSE LENGTH=244;; (*ITAG) Solyc09g010230.1.1 (e_value=3e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3624972-3628689 transcript_region:SL2.40ch09:3624972..3628689+ go_terms:GO:0003700 functional_description:"Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00061353g0004.1 protein AED:0.02 eAED:0.02 QI:235|1|1|1|1|1|4|464|194; (*GB) gi|225444877|ref|XP_002281464.1| (e_value=6e-48) PREDICTED: uncharacterized protein LOC100256150 [Vitis vinifera];; (*TAIR) AT5G57000.2 (e_value=4e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 141 Blast hits to 104 proteins in 24 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 8; Plants - 82; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr5:23063870-23065203 REVERSE LENGTH=186;; (*ITAG) Solyc12g008950.1.1 (e_value=8e-89) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:2253605-2257549 transcript_region:SL2.40ch12:2253605..2257549- functional_description:"At1g17490/F1L3_4 (AHRD V1 *-*- Q9LNQ6_ARATH)"; NbS00016872g0001.1 protein AED:0.19 eAED:0.45 QI:0|0|0|1|1|1|3|0|89; (*ITAG) Solyc02g082240.1.1 (e_value=1e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:40517470-40517907 transcript_region:SL2.40ch02:40517470..40517907+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024932g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0.5|0.33|3|0|289; (*GB) gi|57013948|ref|YP_173421.1| (e_value=3e-102) hypothetical protein NitaMp079 [Nicotiana tabacum];; (*SWP) sp|P26863|RT01_MARPO (e_value=1e-16) Ribosomal protein S1, mitochondrial OS=Marchantia polymorpha GN=RPS1 PE=3 SV=2; NbS00041248g0003.1 protein AED:0.30 eAED:0.32 QI:0|1|0|1|0|0|2|0|93; (*ITAG) Solyc05g006610.2.1 (e_value=1e-17) genomic_reference:SL2.40ch05 gene_region:1261047-1263904 transcript_region:SL2.40ch05:1261047..1263904+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041248g0002.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|111; (*ITAG) Solyc08g044370.1.1 (e_value=9e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00041248g0001.1 protein AED:0.76 eAED:0.79 QI:0|0|0|0.4|1|1|5|0|261; (*ITAG) Solyc10g047840.1.1 (e_value=3e-11) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00021811g0005.1 protein AED:0.12 eAED:0.12 QI:180|0.4|0.5|0.83|1|1|6|227|588; (*GB) gi|351728011|ref|NP_001238204.1| (e_value=2e-19) NAC domain protein [Glycine max];; (*SWP) sp|O49255|NAC29_ARATH (e_value=1e-19) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=9e-21) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc04g005610.2.1 (e_value=6e-21) genomic_reference:SL2.40ch04 gene_region:405228-406898 transcript_region:SL2.40ch04:405228..406898+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00022904g0005.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0.33|0.25|4|0|281; (*GB) gi|297738046|emb|CBI27247.3| (e_value=2e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3ECB8|PP128_ARATH (e_value=8e-31) Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1;; (*TAIR) AT1G77170.1 (e_value=6e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28998133-28999536 REVERSE LENGTH=467;; (*ITAG) Solyc06g066380.1.1 (e_value=2e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00022904g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|255541938|ref|XP_002512033.1| (e_value=1e-19) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc06g066380.1.1 (e_value=9e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00022904g0006.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|144; (*GB) gi|297738046|emb|CBI27247.3| (e_value=1e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5G1T1|PP272_ARATH (e_value=1e-37) Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1;; (*TAIR) AT3G49170.1 (e_value=8e-39) | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18226954-18229600 REVERSE LENGTH=850;; (*ITAG) Solyc06g066380.1.1 (e_value=8e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00007461g0014.1 protein AED:0.05 eAED:0.05 QI:464|1|0.66|1|1|1|3|0|194; (*GB) gi|225447803|ref|XP_002266820.1| (e_value=1e-81) PREDICTED: NAC domain-containing protein 68 [Vitis vinifera];; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=7e-28) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G64530.1 (e_value=4e-74) | Symbols: ANAC104, XND1 | xylem NAC domain 1 | chr5:25795360-25796699 FORWARD LENGTH=187;; (*ITAG) Solyc01g104900.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:84978258-84979448 transcript_region:SL2.40ch01:84978258..84979448- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GZS1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00007461g0020.1 protein AED:0.13 eAED:0.15 QI:129|0.90|0.95|1|0.61|0.72|22|593|620; (*GB) gi|356525902|ref|XP_003531560.1| (e_value=0.0) PREDICTED: C2 domain-containing protein C31G5.15-like [Glycine max];; (*SWP) sp|O14111|PSD3_SCHPO (e_value=4e-69) Phosphatidylserine decarboxylase proenzyme 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psd3 PE=2 SV=2;; (*TAIR) AT5G57190.1 (e_value=0.0) | Symbols: PSD2 | phosphatidylserine decarboxylase 2 | chr5:23171531-23175364 REVERSE LENGTH=635;; (*ITAG) Solyc01g104880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84952632-84968242 transcript_region:SL2.40ch01:84952632..84968242- go_terms:GO:0004609 functional_description:"Phosphatidylserine decarboxylase proenzyme 2 (AHRD V1 **** D3AWK7_POLPA); contains Interpro domain(s) IPR005221 Phosphatidylserine decarboxylase "; GO:0004609 NbS00007461g0022.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|647; (*GB) gi|255565550|ref|XP_002523765.1| (e_value=0.0) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=6e-173) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1;; (*TAIR) AT1G03050.1 (e_value=5e-174) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599;; (*ITAG) Solyc01g104870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84950354-84952688 transcript_region:SL2.40ch01:84950354..84952688+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00007461g0018.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|4|0|305; (*GB) gi|19698450|gb|AAL93153.1|AF485267_1 (e_value=1e-167) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=4e-158) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=1e-158) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc01g104860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84946050-84948029 transcript_region:SL2.40ch01:84946050..84948029+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00007461g0012.1 protein AED:0.42 eAED:0.48 QI:0|0|0.5|1|1|1|4|228|62 NbS00049277g0005.1 protein AED:0.15 eAED:0.17 QI:0|0.83|0.68|0.96|0.75|0.72|25|0|1385; (*GB) gi|297738490|emb|CBI27735.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=1e-177) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT3G43300.1 (e_value=0.0) | Symbols: ATMIN7, BEN1 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1758;; (*ITAG) Solyc12g017830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00026688g0013.1 protein AED:0.32 eAED:0.32 QI:240|0.9|1|1|0.8|0.81|11|288|356; (*GB) gi|6996560|emb|CAB75429.1| (e_value=0.0) oligouridylate binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=6e-52) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT1G17370.1 (e_value=6e-164) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419;; (*ITAG) Solyc07g042180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52516019-52522887 transcript_region:SL2.40ch07:52516019..52522887- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **** A8N215_COPC7); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00026688g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|206; (*GB) gi|389986095|gb|AFL46165.1| (e_value=4e-139) jasmonate ZIM domain protein a [Nicotiana attenuata];; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=4e-43) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1;; (*TAIR) AT1G19180.1 (e_value=3e-44) | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253;; (*ITAG) Solyc07g042170.2.1 (e_value=9e-94) genomic_reference:SL2.40ch07 gene_region:52508186-52509386 transcript_region:SL2.40ch07:52508186..52509386+ go_terms:GO:0005515 functional_description:"Jasmonate ZIM-domain protein 3 (AHRD V1 **-- B3Y563_TOBAC); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00008524g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|213; (*GB) gi|255553949|ref|XP_002518015.1| (e_value=2e-97) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FVV1|GDL28_ARATH (e_value=6e-85) GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1;; (*TAIR) AT1G71250.1 (e_value=5e-86) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26860125-26861582 FORWARD LENGTH=374;; (*ITAG) Solyc11g043110.1.1 (e_value=4e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34833475-34835605 transcript_region:SL2.40ch11:34833475..34835605+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00008524g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|565; (*GB) gi|359493257|ref|XP_002272758.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-76) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G35510.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:13071486-13074675 FORWARD LENGTH=568;; (*ITAG) Solyc04g045470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:32668954-32691178 transcript_region:SL2.40ch04:32668954..32691178+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 ***- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00008524g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.6|0.5|1|0.6|0.66|6|220|422; (*GB) gi|224126053|ref|XP_002319744.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-69) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G33110.1 (e_value=3e-166) | Symbols: | MATE efflux family protein | chr1:12005084-12008618 FORWARD LENGTH=494;; (*ITAG) Solyc10g080340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60942982-60946419 transcript_region:SL2.40ch10:60942982..60946419- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KIF9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00002536g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|0|1|2|0|280; (*GB) gi|66476206|gb|AAY51377.1| (e_value=1e-141) PH4 [Petunia x hybrida];; (*SWP) sp|Q38850|MYB5_ARATH (e_value=2e-83) Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1;; (*TAIR) AT3G13540.1 (e_value=1e-84) | Symbols: ATMYB5, MYB5 | myb domain protein 5 | chr3:4420239-4421443 FORWARD LENGTH=249;; (*ITAG) Solyc01g005660.1.1 (e_value=7e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:460050-461945 transcript_region:SL2.40ch01:460050..461945+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb transcription factor (AHRD V1 **-- Q6Q789_VITVI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00002536g0010.1 protein AED:0.09 eAED:0.10 QI:73|0.83|0.85|1|0.5|0.28|7|232|218; (*GB) gi|359478461|ref|XP_002285716.2| (e_value=4e-116) PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8-like [Vitis vinifera];; (*SWP) sp|Q84MC2|LOG8_ARATH (e_value=4e-98) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1;; (*TAIR) AT5G11950.2 (e_value=3e-99) | Symbols: | Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216;; (*ITAG) Solyc01g005680.2.1 (e_value=1e-123) genomic_reference:SL2.40ch01 gene_region:472491-477313 transcript_region:SL2.40ch01:472491..477313+ functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00002536g0003.1 protein AED:0.21 eAED:0.29 QI:1000|0.5|0.66|1|0|0.33|3|1328|97 NbS00002536g0004.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|1|1|2|0|179; (*GB) gi|224053741|ref|XP_002297956.1| (e_value=4e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RX01|Y3567_ARATH (e_value=5e-36) BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1;; (*TAIR) AT4G10800.1 (e_value=4e-39) | Symbols: | BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD LENGTH=283;; (*ITAG) Solyc01g005670.2.1 (e_value=4e-106) genomic_reference:SL2.40ch01 gene_region:465032-467636 transcript_region:SL2.40ch01:465032..467636+ functional_description:"Disease resistance protein (AHRD V1 ***- D1GEG2_BRARP)"; NbS00060283g0006.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0.5|0.33|3|0|620; (*GB) gi|255540705|ref|XP_002511417.1| (e_value=0.0) Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis];; (*SWP) sp|P92990|JP650_ARATH (e_value=0.0) Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2;; (*TAIR) AT1G70370.2 (e_value=0.0) | Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626;; (*ITAG) Solyc03g114240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58327331-58329622 transcript_region:SL2.40ch03:58327331..58329622- go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- C1PI55_ARATH); contains Interpro domain(s) IPR004873 BURP "; GO:0004650 NbS00008632g0008.1 protein AED:0.11 eAED:0.15 QI:965|0.55|0.6|1|0.22|0.5|10|929|344; (*GB) gi|359490401|ref|XP_002279763.2| (e_value=2e-134) PREDICTED: uncharacterized protein LOC100265879 [Vitis vinifera];; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=2e-66) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT5G62090.2 (e_value=3e-111) | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816;; (*ITAG) Solyc03g026190.2.1 (e_value=5e-115) genomic_reference:SL2.40ch03 gene_region:7965135-7970790 transcript_region:SL2.40ch03:7965135..7970790- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00011561g0007.1 protein AED:0.30 eAED:0.30 QI:293|1|1|1|0.25|0.4|5|322|199; (*GB) gi|225436815|ref|XP_002270246.1| (e_value=6e-33) PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera];; (*SWP) sp|F6HQ26|RU1C_VITVI (e_value=2e-34) U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1;; (*TAIR) AT4G03120.1 (e_value=2e-32) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:1385747-1387331 FORWARD LENGTH=207;; (*ITAG) Solyc01g067830.2.1 (e_value=3e-49) genomic_reference:SL2.40ch01 gene_region:69193053-69197389 transcript_region:SL2.40ch01:69193053..69197389- go_terms:GO:0005634,GO:0008270 functional_description:"U1 small nuclear ribonucleoprotein C protein (AHRD V1 *-*- C1MKH9_MICPS); contains Interpro domain(s) IPR013085 Zinc finger, U1-C type "; GO:0005634,GO:0008270 NbS00011561g0006.1 protein AED:0.09 eAED:0.09 QI:427|0.88|0.8|1|1|1|10|268|745; (*GB) gi|194396283|gb|ACF60511.1| (e_value=0.0) 1-D-deoxyxylulose 5-phosphate synthase [Nicotiana tabacum];; (*SWP) sp|O78328|DXS_CAPAN (e_value=0.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1;; (*TAIR) AT4G15560.1 (e_value=0.0) | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717;; (*ITAG) Solyc01g067890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69258969-69263260 transcript_region:SL2.40ch01:69258969..69263260- go_terms:GO:0016114,GO:0008152 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 1 (AHRD V1 ***- C7U110_SOLLC); contains Interpro domain(s) IPR005474 Transketolase, N-terminal IPR005475 Transketolase, central region IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0016114,GO:0008152 NbS00035717g0012.1 protein AED:0.14 eAED:0.14 QI:191|1|1|1|0.75|0.6|5|1848|214; (*GB) gi|255550347|ref|XP_002516224.1| (e_value=3e-116) bacterioferritin comigratory protein, putative [Ricinus communis];; (*SWP) sp|Q6QPJ6|PRXQ_POPJC (e_value=4e-116) Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1;; (*TAIR) AT3G26060.1 (e_value=4e-97) | Symbols: ATPRX Q | Thioredoxin superfamily protein | chr3:9524807-9526123 FORWARD LENGTH=216;; (*ITAG) Solyc07g042440.2.1 (e_value=8e-132) genomic_reference:SL2.40ch07 gene_region:52904495-52907327 transcript_region:SL2.40ch07:52904495..52907327- go_terms:GO:0008379 functional_description:"Alkyl hydroperoxide reductase/Thiol specific antioxidant family protein (AHRD V1 **-- B0C2Q1_ACAM1); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379 NbS00035717g0015.1 protein AED:0.19 eAED:0.21 QI:0|0.84|0.64|1|0.53|0.64|14|0|940; (*GB) gi|225444627|ref|XP_002277540.1| (e_value=0.0) PREDICTED: respiratory burst oxidase homolog protein E [Vitis vinifera];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=0.0) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.1 (e_value=0.0) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=926;; (*ITAG) Solyc07g042460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52919322-52925426 transcript_region:SL2.40ch07:52919322..52925426- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein E (AHRD V1 **** B2D0N7_HORVD); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00035717g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.5|1|0.8|1|6|0|560; (*GB) gi|225444635|ref|XP_002277560.1| (e_value=0.0) PREDICTED: probable flavin-containing monooxygenase 1 [Vitis vinifera];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=0.0) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=0.0) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g042430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:52901895-52904375 transcript_region:SL2.40ch07:52901895..52904375+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase (AHRD V1 **** C1GPZ2_PARBA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00035717g0002.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|1|1|2|0|110; (*GB) gi|224068546|ref|XP_002326142.1| (e_value=5e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19240.1 (e_value=1e-20) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6649562-6650384 REVERSE LENGTH=104;; (*ITAG) Solyc07g042450.2.1 (e_value=3e-34) genomic_reference:SL2.40ch07 gene_region:52917306-52918672 transcript_region:SL2.40ch07:52917306..52918672+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029887g0013.1 protein AED:0.13 eAED:0.13 QI:57|0.5|0.4|0.6|1|1|5|508|151; (*GB) gi|255541620|ref|XP_002511874.1| (e_value=8e-62) Sialin, putative [Ricinus communis];; (*SWP) sp|Q9SDI4|PHT41_ORYSJ (e_value=1e-53) Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1;; (*TAIR) AT4G00370.1 (e_value=1e-43) | Symbols: ANTR2, PHT4;4 | Major facilitator superfamily protein | chr4:163153-166111 REVERSE LENGTH=541;; (*ITAG) Solyc01g094720.2.1 (e_value=5e-65) genomic_reference:SL2.40ch01 gene_region:77913332-77919557 transcript_region:SL2.40ch01:77913332..77919557+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00029887g0010.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0.5|1|0.66|0.75|4|295|589; (*GB) gi|225456232|ref|XP_002283101.1| (e_value=0.0) PREDICTED: origin recognition complex subunit 5-like [Vitis vinifera];; (*SWP) sp|Q9WUV0|ORC5_MOUSE (e_value=6e-30) Origin recognition complex subunit 5 OS=Mus musculus GN=Orc5 PE=2 SV=1;; (*TAIR) AT4G29910.1 (e_value=6e-176) | Symbols: ORC5, ATORC5 | origin recognition complex protein 5 | chr4:14628154-14630055 REVERSE LENGTH=534;; (*ITAG) Solyc01g094760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77938693-77941753 transcript_region:SL2.40ch01:77938693..77941753- go_terms:GO:0042802 functional_description:"Origin recognition complex 5 subunit (AHRD V1 ***- Q6EWX0_ARATH)"; GO:0042802 NbS00029887g0011.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|309; (*GB) gi|359489625|ref|XP_002275132.2| (e_value=2e-105) PREDICTED: uncharacterized protein LOC100244782 [Vitis vinifera];; (*TAIR) AT4G00355.2 (e_value=1e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:155207-156090 FORWARD LENGTH=266;; (*ITAG) Solyc01g094770.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:77943220-77947201 transcript_region:SL2.40ch01:77943220..77947201- functional_description:"Unknown Protein (AHRD V1)"; NbS00029887g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|86; (*GB) gi|225454276|ref|XP_002275895.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100256823 [Vitis vinifera];; (*TAIR) AT2G46000.1 (e_value=1e-20) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208;; (*ITAG) Solyc10g012400.2.1 (e_value=6e-33) genomic_reference:SL2.40ch10 gene_region:5079720-5081923 transcript_region:SL2.40ch10:5079720..5081923+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029887g0002.1 protein AED:0.12 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|538; (*GB) gi|224130296|ref|XP_002320802.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|O23066|C86A2_ARATH (e_value=0.0) Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1;; (*TAIR) AT2G45970.1 (e_value=0.0) | Symbols: CYP86A8, LCR | cytochrome P450, family 86, subfamily A, polypeptide 8 | chr2:18912548-18914161 REVERSE LENGTH=537;; (*ITAG) Solyc01g094750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77933793-77935620 transcript_region:SL2.40ch01:77933793..77935620- go_terms:GO:0008393,GO:0019825 functional_description:"Cytochrome P450"; GO:0008393,GO:0019825 NbS00058196g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|0|0|2|198|135; (*GB) gi|332322089|emb|CCA65980.1| (e_value=2e-36) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00048034g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=2e-74) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT2G21100.1 (e_value=4e-49) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:9048687-9049336 REVERSE LENGTH=187;; (*ITAG) Solyc02g032040.1.1 (e_value=3e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:18059156-18059731 transcript_region:SL2.40ch02:18059156..18059731+ functional_description:"Disease resistance response protein (AHRD V1 ***- A8IXC7_BRACM); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00023232g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.87|0.77|1|0.87|0.66|9|0|585; (*GB) gi|11558256|emb|CAC17796.1| (e_value=0.0) microtubule-associated protein MAP65-1c [Nicotiana tabacum];; (*SWP) sp|Q9FLP0|MA651_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1;; (*TAIR) AT5G55230.1 (e_value=0.0) | Symbols: ATMAP65-1, MAP65-1 | microtubule-associated proteins 65-1 | chr5:22402716-22405182 FORWARD LENGTH=587;; (*ITAG) Solyc07g064970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64141117-64144666 transcript_region:SL2.40ch07:64141117..64144666+ go_terms:GO:0008017,GO:0046983 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017,GO:0046983 NbC25425791g0001.1 protein AED:0.22 eAED:0.22 QI:12|0|0|0.5|1|1|2|0|88; (*GB) gi|225461024|ref|XP_002278686.1| (e_value=1e-47) PREDICTED: uncharacterized protein LOC100241838 [Vitis vinifera];; (*TAIR) AT4G27020.1 (e_value=1e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064440.2.1 (e_value=1e-51) genomic_reference:SL2.40ch07 gene_region:63821907-63828376 transcript_region:SL2.40ch07:63821907..63828376+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00009315g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0|2|57|23 NbS00011364g0002.1 protein AED:0.30 eAED:0.33 QI:0|0.33|0|0.75|1|1|4|0|99; (*GB) gi|225457023|ref|XP_002282635.1| (e_value=4e-23) PREDICTED: putative exosome complex component rrp40 [Vitis vinifera];; (*ITAG) Solyc06g071460.2.1 (e_value=4e-28) genomic_reference:SL2.40ch06 gene_region:40355335-40359897 transcript_region:SL2.40ch06:40355335..40359897+ go_terms:GO:0005515 functional_description:"Exosome complex exonuclease RRP40 (AHRD V1 ***- B6TDY7_MAIZE)"; GO:0005515 NbS00011364g0005.1 protein AED:0.38 eAED:0.38 QI:250|0.76|0.57|1|0.53|0.57|14|0|462; (*GB) gi|147779655|emb|CAN67215.1| (e_value=1e-118) hypothetical protein VITISV_005839 [Vitis vinifera];; (*SWP) sp|Q9FXT6|PEX14_ARATH (e_value=1e-81) Peroxisomal membrane protein PEX14 OS=Arabidopsis thaliana GN=PEX14 PE=1 SV=2;; (*TAIR) AT5G62810.1 (e_value=8e-83) | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220323-25223571 FORWARD LENGTH=507;; (*ITAG) Solyc06g071470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00013158g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|224106187|ref|XP_002314077.1| (e_value=1e-32) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q7EZT1|NAC67_ORYSJ (e_value=5e-28) NAC domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=NAC67 PE=2 SV=1;; (*TAIR) AT1G77450.1 (e_value=7e-28) | Symbols: anac032, NAC032 | NAC domain containing protein 32 | chr1:29100029-29100981 FORWARD LENGTH=253;; (*ITAG) Solyc10g083450.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62570813-62573756 transcript_region:SL2.40ch10:62570813..62573756- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HNX9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00029348g0013.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.66|0.77|0.87|0.88|9|6|255; (*GB) gi|255544786|ref|XP_002513454.1| (e_value=2e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G12920.1 (e_value=2e-38) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4077917-4082585 REVERSE LENGTH=537;; (*ITAG) Solyc11g045510.1.1 (e_value=5e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:38012784-38020943 transcript_region:SL2.40ch11:38012784..38020943+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q019D3_OSTTA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00029348g0005.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|132; (*ITAG) Solyc07g032700.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00000910g0009.1 protein AED:0.05 eAED:0.05 QI:193|1|0.5|1|1|1|2|0|144; (*GB) gi|30687628|ref|NP_850297.1| (e_value=3e-63) intron-binding protein aquarius [Arabidopsis thaliana];; (*SWP) sp|Q8CFQ3|AQR_MOUSE (e_value=1e-15) Intron-binding protein aquarius OS=Mus musculus GN=Aqr PE=2 SV=2;; (*TAIR) AT2G38770.1 (e_value=7e-66) | Symbols: EMB2765 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16203185-16210253 REVERSE LENGTH=1509;; (*ITAG) Solyc01g068480.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:70111269-70125144 transcript_region:SL2.40ch01:70111269..70125144+ functional_description:"Embryo defective 2765 (Fragment) (AHRD V1 *-*- D3U0D1_9MAGN)"; NbS00000910g0007.1 protein AED:0.17 eAED:0.17 QI:275|1|1|1|1|1|5|115|217; (*GB) gi|225438299|ref|XP_002270204.1| (e_value=6e-58) PREDICTED: uncharacterized protein LOC100262774 [Vitis vinifera];; (*TAIR) AT3G15750.1 (e_value=5e-32) | Symbols: | Essential protein Yae1, N-terminal | chr3:5335089-5336184 FORWARD LENGTH=199;; (*ITAG) Solyc01g068450.2.1 (e_value=5e-90) genomic_reference:SL2.40ch01 gene_region:70089237-70090777 transcript_region:SL2.40ch01:70089237..70090777+ functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW04_ARATH); contains Interpro domain(s) IPR019191 Essential protein Yae1, N-terminal "; NbS00000910g0012.1 protein AED:0.11 eAED:0.16 QI:0|0|0|1|0|0|2|0|805; (*GB) gi|255544079|ref|XP_002513102.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G38800.1 (e_value=4e-30) | Symbols: | Plant calmodulin-binding protein-related | chr2:16216999-16218837 FORWARD LENGTH=612;; (*ITAG) Solyc01g068460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70091158-70094189 transcript_region:SL2.40ch01:70091158..70094189- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *-*- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00016637g0007.1 protein AED:0.01 eAED:0.01 QI:155|1|1|1|1|1|2|908|421; (*GB) gi|224080937|ref|XP_002306237.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10058|YAM3_SCHPO (e_value=3e-32) Putative oxidoreductase C1F5.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F5.03c PE=2 SV=1;; (*TAIR) AT5G67290.1 (e_value=2e-168) | Symbols: | FAD-dependent oxidoreductase family protein | chr5:26848419-26849755 REVERSE LENGTH=406;; (*ITAG) Solyc03g044190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12411174-12414872 transcript_region:SL2.40ch03:12411174..12414872+ go_terms:GO:0005515 functional_description:"FAD-dependent oxidoreductase (AHRD V1 **-- A8ISJ7_CHLRE); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0005515 NbS00016637g0009.1 protein AED:0.21 eAED:0.26 QI:0|0|0|1|0.33|0.5|4|0|162; (*GB) gi|2414570|emb|CAB16317.1| (e_value=2e-44) cysteine proteinase precursor [Nicotiana tabacum];; (*SWP) sp|P43297|RD21A_ARATH (e_value=7e-29) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT3G19390.1 (e_value=4e-30) | Symbols: | Granulin repeat cysteine protease family protein | chr3:6723024-6724768 FORWARD LENGTH=452;; (*ITAG) Solyc03g044230.1.1 (e_value=5e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:12460872-12464307 transcript_region:SL2.40ch03:12460872..12464307- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00003893g0016.1 protein AED:0.16 eAED:0.19 QI:0|0.69|0.57|1|0.53|0.64|14|196|770; (*GB) gi|359489005|ref|XP_002278669.2| (e_value=0.0) PREDICTED: phosphate transporter PHO1 homolog 9-like [Vitis vinifera];; (*SWP) sp|Q9LJW0|PHO19_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 9 OS=Arabidopsis thaliana GN=PHO1-H9 PE=2 SV=1;; (*TAIR) AT3G29060.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr3:11044990-11048465 REVERSE LENGTH=800;; (*ITAG) Solyc02g088220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44955291-44959097 transcript_region:SL2.40ch02:44955291..44959097- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00003893g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|155; (*GB) gi|47825035|gb|AAT38805.1| (e_value=3e-23) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g020600.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:11737919-11739538 transcript_region:SL2.40ch11:11737919..11739538- functional_description:"Unknown Protein (AHRD V1)"; NbS00003893g0015.1 protein AED:0.25 eAED:0.25 QI:274|0.66|0.57|1|0.66|0.85|7|0|858; (*GB) gi|255545438|ref|XP_002513779.1| (e_value=2e-92) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q0V9R3|DI3L2_XENTR (e_value=7e-28) DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1;; (*TAIR) AT1G77680.1 (e_value=2e-70) | Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055;; (*ITAG) Solyc11g013030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00003893g0017.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|130; (*GB) gi|225459503|ref|XP_002285842.1| (e_value=8e-35) PREDICTED: uncharacterized protein LOC100262661 [Vitis vinifera];; (*TAIR) AT4G08240.1 (e_value=4e-32) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:5194713-5195756 FORWARD LENGTH=136;; (*ITAG) Solyc11g013020.1.1 (e_value=3e-66) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5885626-5887917 transcript_region:SL2.40ch11:5885626..5887917- functional_description:"Unknown Protein (AHRD V1)"; NbS00034659g0007.1 protein AED:0.16 eAED:0.16 QI:135|0.8|0.90|1|0.8|0.90|11|140|406; (*GB) gi|224110276|ref|XP_002315469.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q75L42|CIPKH_ORYSJ (e_value=9e-175) CBL-interacting protein kinase 17 OS=Oryza sativa subsp. japonica GN=CIPK17 PE=2 SV=1;; (*TAIR) AT3G17510.1 (e_value=1e-173) | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein kinase 1 | chr3:5989309-5992627 REVERSE LENGTH=444;; (*ITAG) Solyc05g053210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62492663-62497604 transcript_region:SL2.40ch05:62492663..62497604+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 1 (AHRD V1 **** A0MNI9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00034659g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.83|1|0.63|0.58|12|541|529; (*GB) gi|224110276|ref|XP_002315469.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWC9|CIPK1_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2;; (*TAIR) AT3G17510.1 (e_value=0.0) | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein kinase 1 | chr3:5989309-5992627 REVERSE LENGTH=444;; (*ITAG) Solyc05g053210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62492663-62497604 transcript_region:SL2.40ch05:62492663..62497604+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 1 (AHRD V1 **** A0MNI9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00046634g0011.1 protein AED:0.17 eAED:0.18 QI:0|0.33|0.25|1|0.33|0.25|4|558|447; (*GB) gi|225423497|ref|XP_002274401.1| (e_value=5e-107) PREDICTED: probable inactive purple acid phosphatase 2 [Vitis vinifera];; (*SWP) sp|Q9LMG7|PPA2_ARATH (e_value=5e-89) Probable inactive purple acid phosphatase 2 OS=Arabidopsis thaliana GN=PAP2 PE=2 SV=1;; (*TAIR) AT1G13900.1 (e_value=4e-90) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4753494-4755554 REVERSE LENGTH=656;; (*ITAG) Solyc04g005450.2.1 (e_value=8e-116) genomic_reference:SL2.40ch04 gene_region:310785-314269 transcript_region:SL2.40ch04:310785..314269- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 *-** B0WRM8_CULQU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00046634g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|473; (*GB) gi|2081604|dbj|BAA19926.1| (e_value=0.0) PEThy; ZPT4-2 [Petunia x hybrida];; (*TAIR) AT1G26610.1 (e_value=2e-59) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc04g005440.1.1 (e_value=2e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:307618-309297 transcript_region:SL2.40ch04:307618..309297+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00046634g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|225423493|ref|XP_002274352.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera];; (*SWP) sp|Q9SIL5|PP165_ARATH (e_value=1e-110) Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1;; (*TAIR) AT2G20540.1 (e_value=8e-112) | Symbols: MEF21 | mitochondrial editing factor 21 | chr2:8844160-8845764 FORWARD LENGTH=534;; (*ITAG) Solyc04g005460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:318155-319747 transcript_region:SL2.40ch04:318155..319747- go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00046634g0001.1 protein AED:0.20 eAED:0.20 QI:135|0.25|0.4|1|0.75|0.6|5|0|201; (*GB) gi|225423537|ref|XP_002271714.1| (e_value=1e-15) PREDICTED: uncharacterized protein LOC100249028 [Vitis vinifera];; (*TAIR) AT1G13920.1 (e_value=3e-13) | Symbols: | Remorin family protein | chr1:4758188-4759754 FORWARD LENGTH=345;; (*ITAG) Solyc05g012550.2.1 (e_value=1e-40) genomic_reference:SL2.40ch05 gene_region:5785174-5787462 transcript_region:SL2.40ch05:5785174..5787462+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00015315g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.33|0.66|0.6|0.5|6|0|337; (*GB) gi|356553583|ref|XP_003545134.1| (e_value=3e-96) PREDICTED: uncharacterized protein LOC100799085 [Glycine max];; (*TAIR) AT2G30900.1 (e_value=6e-90) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055730.2.1 (e_value=1e-112) genomic_reference:SL2.40ch07 gene_region:60985840-60988132 transcript_region:SL2.40ch07:60985840..60988132+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00042221g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.94|1|0.76|0.83|18|63|642; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=0.0) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=3e-104) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc06g068590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38903301-38910601 transcript_region:SL2.40ch06:38903301..38910601+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017953g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|261; (*GB) gi|121663827|dbj|BAF44533.1| (e_value=1e-139) class IV chitinase [Nicotiana tabacum];; (*SWP) sp|Q7Y1Z0|CHI5_ORYSJ (e_value=7e-97) Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1;; (*TAIR) AT3G54420.1 (e_value=5e-101) | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of carrot EP3-3 chitinase | chr3:20145935-20147034 FORWARD LENGTH=273;; (*ITAG) Solyc04g072000.2.1 (e_value=7e-130) genomic_reference:SL2.40ch04 gene_region:56659743-56661631 transcript_region:SL2.40ch04:56659743..56661631- go_terms:GO:0008843 functional_description:"Chitinase (AHRD V1 ***- D0QU15_LACSA); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0008843 NbS00017953g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|3|0|186; (*GB) gi|255555093|ref|XP_002518584.1| (e_value=8e-45) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LK57|PP226_ARATH (e_value=6e-38) Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1;; (*TAIR) AT3G13160.1 (e_value=5e-39) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4229994-4231178 REVERSE LENGTH=394;; (*ITAG) Solyc02g079830.1.1 (e_value=2e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017953g0011.1 protein AED:0.30 eAED:0.30 QI:137|1|0.5|1|0|0.25|4|291|125; (*GB) gi|388498074|gb|AFK37103.1| (e_value=1e-41) unknown [Lotus japonicus];; (*SWP) sp|O04421|SRP14_ARATH (e_value=7e-41) Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2;; (*TAIR) AT2G43640.2 (e_value=6e-42) | Symbols: | Signal recognition particle, SRP9/SRP14 subunit | chr2:18097614-18098619 REVERSE LENGTH=121; NbS00017953g0013.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|249; (*GB) gi|121663827|dbj|BAF44533.1| (e_value=3e-145) class IV chitinase [Nicotiana tabacum];; (*SWP) sp|O04138|CHI4_ORYSJ (e_value=7e-114) Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2;; (*TAIR) AT3G54420.1 (e_value=3e-113) | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of carrot EP3-3 chitinase | chr3:20145935-20147034 FORWARD LENGTH=273;; (*ITAG) Solyc06g053380.2.1 (e_value=2e-144) genomic_reference:SL2.40ch06 gene_region:32618593-32620289 transcript_region:SL2.40ch06:32618593..32620289- go_terms:GO:0008843 functional_description:"Chitinase (AHRD V1 ***- D0QU15_LACSA); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0008843 NbS00013769g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|0|2|0|360; (*GB) gi|10998537|gb|AAG25966.1|AF302082_1 (e_value=0.0) cytokinin-regulated kinase 1 [Nicotiana tabacum];; (*SWP) sp|Q9FIJ6|ACCR4_ARATH (e_value=3e-124) Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1;; (*TAIR) AT5G47850.1 (e_value=2e-125) | Symbols: CCR4 | CRINKLY4 related 4 | chr5:19378803-19381058 REVERSE LENGTH=751;; (*ITAG) Solyc11g020230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:10541737-10544073 transcript_region:SL2.40ch11:10541737..10544073- go_terms:GO:0004672,GO:0042803 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672,GO:0042803 NbS00025147g0002.1 protein AED:0.22 eAED:0.22 QI:362|1|1|1|0.66|0.71|7|222|190; (*GB) gi|255575247|ref|XP_002528527.1| (e_value=1e-65) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT1G76520.2 (e_value=3e-57) | Symbols: | Auxin efflux carrier family protein | chr1:28715384-28717289 FORWARD LENGTH=390;; (*ITAG) Solyc03g031990.2.1 (e_value=6e-105) genomic_reference:SL2.40ch03 gene_region:8759273-8764184 transcript_region:SL2.40ch03:8759273..8764184- go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00012491g0001.1 protein AED:0.06 eAED:0.06 QI:510|1|1|1|0.71|0.5|8|225|391; (*GB) gi|359482283|ref|XP_002264701.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like [Vitis vinifera];; (*SWP) sp|Q93ZG7|RH38_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2;; (*TAIR) AT3G53110.1 (e_value=0.0) | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496;; (*ITAG) Solyc10g085790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64195607-64200611 transcript_region:SL2.40ch10:64195607..64200611+ go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00012491g0009.1 protein AED:0.22 eAED:0.22 QI:151|1|1|1|0.66|0.75|4|331|161; (*GB) gi|297734936|emb|CBI17170.3| (e_value=5e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G45050.3 (e_value=2e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16476023-16477107 FORWARD LENGTH=158;; (*ITAG) Solyc04g007410.2.1 (e_value=3e-59) genomic_reference:SL2.40ch04 gene_region:1091223-1093103 transcript_region:SL2.40ch04:1091223..1093103- functional_description:"Os06g0731300 protein (Fragment) (AHRD V1 *-*- Q0D996_ORYSJ)"; NbS00017026g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|42374767|gb|AAS13437.1| (e_value=3e-70) rapid alkalinization factor preproprotein [Nicotiana attenuata];; (*TAIR) AT4G15800.1 (e_value=2e-38) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc01g099520.2.1 (e_value=2e-66) genomic_reference:SL2.40ch01 gene_region:81501401-81502283 transcript_region:SL2.40ch01:81501401..81502283- go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00024416g0012.1 protein AED:0.22 eAED:0.29 QI:0|0|0|0.9|0.77|0.7|10|0|1266; (*GB) gi|125587883|gb|EAZ28547.1| (e_value=0.0) hypothetical protein OsJ_12529 [Oryza sativa Japonica Group];; (*SWP) sp|O75643|U520_HUMAN (e_value=1e-121) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=4e-174) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=1e-157) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00024416g0015.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0|1|0|0|4|0|491; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=7e-176) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=2e-52) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=2e-152) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00024416g0006.1 protein AED:0.27 eAED:0.45 QI:0|0|0|1|1|1|2|0|138 NbS00024416g0013.1 protein AED:0.04 eAED:0.04 QI:175|1|0.75|1|1|1|4|460|499; (*GB) gi|225458301|ref|XP_002282736.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 7 [Vitis vinifera];; (*SWP) sp|Q9M069|E137_ARATH (e_value=8e-159) Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2;; (*TAIR) AT2G16230.1 (e_value=4e-166) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:7035463-7038326 REVERSE LENGTH=503;; (*ITAG) Solyc04g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62091008-62094221 transcript_region:SL2.40ch04:62091008..62094221- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T289_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00028880g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|379056260|dbj|BAL68170.1| (e_value=4e-93) ethylene response factor #206 [Nicotiana tabacum];; (*ITAG) Solyc10g009110.1.1 (e_value=8e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00049090g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|3|0|149; (*GB) gi|225438097|ref|XP_002277335.1| (e_value=8e-35) PREDICTED: serine/threonine-protein kinase 19 [Vitis vinifera];; (*TAIR) AT2G20495.1 (e_value=9e-30) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:8833180-8835034 FORWARD LENGTH=282;; (*ITAG) Solyc06g008350.2.1 (e_value=8e-41) genomic_reference:SL2.40ch06 gene_region:2221135-2228530 transcript_region:SL2.40ch06:2221135..2228530+ functional_description:"Serine/threonine-protein kinase 19 (AHRD V1 ***- B6TW02_MAIZE); contains Interpro domain(s) IPR018865 Serine-threonine protein kinase 19 "; NbS00023978g0004.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.25|1|1|4|0|167; (*GB) gi|224064484|ref|XP_002301499.1| (e_value=4e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|P37880|SYRC_CRIGR (e_value=7e-35) Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS PE=2 SV=1;; (*TAIR) AT1G66530.1 (e_value=5e-57) | Symbols: | Arginyl-tRNA synthetase, class Ic | chr1:24819064-24822277 REVERSE LENGTH=590;; (*ITAG) Solyc12g008570.1.1 (e_value=8e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1956456-1966721 transcript_region:SL2.40ch12:1956456..1966721+ go_terms:GO:0006420,GO:0005737 functional_description:"Arginyl-tRNA synthetase (AHRD V1 ***- O23247_ARATH); contains Interpro domain(s) IPR001278 Arginyl-tRNA synthetase, class Ic "; GO:0006420,GO:0005737 NbS00033693g0011.1 protein AED:0.32 eAED:0.32 QI:8|1|0.66|1|1|1|3|0|145; (*GB) gi|297736877|emb|CBI26078.3| (e_value=3e-101) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q65WT0|BD31B_ORYSJ (e_value=9e-98) Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica GN=Os05g0446300 PE=2 SV=1;; (*TAIR) AT4G21110.1 (e_value=1e-95) | Symbols: | G10 family protein | chr4:11267673-11268774 FORWARD LENGTH=145;; (*ITAG) Solyc09g009300.2.1 (e_value=3e-107) genomic_reference:SL2.40ch09 gene_region:2673382-2677553 transcript_region:SL2.40ch09:2673382..2677553- go_terms:GO:0001965 functional_description:"BUD31 homolog (AHRD V1 **-- C1C3X0_RANCA); contains Interpro domain(s) IPR001748 G10 protein "; GO:0001965 NbS00033693g0009.1 protein AED:0.34 eAED:0.34 QI:212|1|0.87|1|0.57|0.62|8|0|321; (*GB) gi|225452545|ref|XP_002275234.1| (e_value=5e-107) PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SQK3|EM506_ARATH (e_value=4e-96) Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1;; (*TAIR) AT5G40160.1 (e_value=3e-97) | Symbols: EMB139, EMB506 | Ankyrin repeat family protein | chr5:16062726-16064301 REVERSE LENGTH=315;; (*ITAG) Solyc09g009290.2.1 (e_value=4e-160) genomic_reference:SL2.40ch09 gene_region:2668872-2673354 transcript_region:SL2.40ch09:2668872..2673354+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein (AHRD V1 **-- B4F7X1_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00031594g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0.2|1|0.5|0.4|5|0|489; (*GB) gi|359484714|ref|XP_002264041.2| (e_value=2e-72) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera];; (*SWP) sp|Q42371|ERECT_ARATH (e_value=3e-15) LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1;; (*TAIR) AT1G74190.1 (e_value=3e-41) | Symbols: AtRLP15, RLP15 | receptor like protein 15 | chr1:27902590-27906158 REVERSE LENGTH=965;; (*ITAG) Solyc11g011180.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4245081-4248862 transcript_region:SL2.40ch11:4245081..4248862- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00031594g0002.1 protein AED:0.43 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|359484712|ref|XP_002264681.2| (e_value=3e-37) PREDICTED: serine/threonine-protein kinase BRI1-like 1-like [Vitis vinifera];; (*SWP) sp|Q9SHI3|RLP2_ARATH (e_value=3e-20) Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1;; (*TAIR) AT1G74170.1 (e_value=9e-22) | Symbols: AtRLP13, RLP13 | receptor like protein 13 | chr1:27891555-27895441 REVERSE LENGTH=1000;; (*ITAG) Solyc04g014400.2.1 (e_value=9e-31) genomic_reference:SL2.40ch04 gene_region:4642331-4650160 transcript_region:SL2.40ch04:4642331..4650160- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00024277g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|83 NbS00024277g0006.1 protein AED:0.04 eAED:0.04 QI:12|1|1|1|1|1|2|218|352; (*GB) gi|225459168|ref|XP_002285717.1| (e_value=1e-152) PREDICTED: purine permease 3 [Vitis vinifera];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=1e-118) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=1e-119) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc06g035420.1.1 (e_value=9e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20994030-20996006 transcript_region:SL2.40ch06:20994030..20996006- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00000630g0009.1 protein AED:0.12 eAED:0.12 QI:251|1|0.75|1|1|1|4|0|465; (*GB) gi|224141333|ref|XP_002324028.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9EPI1|XYLT1_RAT (e_value=9e-19) Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1;; (*TAIR) AT5G15050.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc02g087550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44534583-44538659 transcript_region:SL2.40ch02:44534583..44538659- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 (AHRD V1 *--* GCNT4_DANRE); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00052846g0002.1 protein AED:0.07 eAED:0.07 QI:187|1|1|1|1|1|4|546|288; (*GB) gi|350535901|ref|NP_001234475.1| (e_value=0.0) xyloglucan endotransglucosylase-hydrolase XTH7 [Solanum lycopersicum];; (*SWP) sp|Q8LF99|XTH6_ARATH (e_value=6e-166) Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2;; (*TAIR) AT5G65730.1 (e_value=5e-167) | Symbols: XTH6 | xyloglucan endotransglucosylase/hydrolase 6 | chr5:26299080-26300290 FORWARD LENGTH=292;; (*ITAG) Solyc02g091920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47711950-47713581 transcript_region:SL2.40ch02:47711950..47713581+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q2MK81_9ROSA); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00000492g0007.1 protein AED:0.06 eAED:0.06 QI:114|0|0.4|0.8|0.25|0.2|5|509|340; (*GB) gi|147797970|emb|CAN67266.1| (e_value=1e-69) hypothetical protein VITISV_028729 [Vitis vinifera];; (*SWP) sp|Q9LT84|U496M_ARATH (e_value=1e-46) UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2;; (*TAIR) AT3G19330.1 (e_value=1e-47) | Symbols: | Protein of unknown function (DUF677) | chr3:6699423-6700772 FORWARD LENGTH=382;; (*ITAG) Solyc01g005480.2.1 (e_value=6e-133) genomic_reference:SL2.40ch01 gene_region:333096-336980 transcript_region:SL2.40ch01:333096..336980+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00000492g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.6|0.5|1|0.6|0.5|6|293|501; (*GB) gi|224138406|ref|XP_002322806.1| (e_value=0.0) iaa-amino acid hydrolase 4 [Populus trichocarpa];; (*SWP) sp|Q851L5|ILL3_ORYSJ (e_value=8e-165) IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=2e-162) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc01g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:337908-340586 transcript_region:SL2.40ch01:337908..340586- go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 ***- B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0016787,GO:0008152 NbS00051058g0004.1 protein AED:0.21 eAED:0.21 QI:115|0|0.5|1|1|1|2|0|156; (*GB) gi|225453046|ref|XP_002267312.1| (e_value=4e-50) PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera];; (*TAIR) AT5G28490.1 (e_value=2e-51) | Symbols: LSH1 | Protein of unknown function (DUF640) | chr5:10454541-10455113 REVERSE LENGTH=190;; (*ITAG) Solyc05g055020.2.1 (e_value=6e-60) genomic_reference:SL2.40ch05 gene_region:63942586-63944841 transcript_region:SL2.40ch05:63942586..63944841- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00014120g0008.1 protein AED:0.46 eAED:0.64 QI:0|0|0|0.55|0.62|0.66|9|0|517; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-24) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=8e-47) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00014120g0118.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|0.5|2|0|454 NbS00014120g0119.1 protein AED:0.38 eAED:0.45 QI:64|0.33|0.25|1|0.66|0.75|4|470|114 NbS00014120g0121.1 protein AED:0.04 eAED:0.09 QI:38|0.5|0.33|1|1|1|3|0|208 NbS00014120g0105.1 protein AED:0.28 eAED:0.28 QI:631|1|0.5|1|1|1|2|0|244 NbS00014120g0117.1 protein AED:0.30 eAED:0.30 QI:129|0.5|0.33|1|1|1|3|0|316 NbS00014120g0103.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.4|1|1|5|0|127 NbS00015071g0012.1 protein AED:0.18 eAED:0.19 QI:267|0.36|0.33|1|0.54|0.5|12|0|1035; (*GB) gi|302141847|emb|CBI19050.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8IYB7|DI3L2_HUMAN (e_value=2e-59) DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4;; (*TAIR) AT1G77680.1 (e_value=3e-127) | Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055;; (*ITAG) Solyc11g013030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00015071g0001.1 protein AED:0.16 eAED:0.20 QI:0|1|0.5|1|0|0|2|132|663; (*GB) gi|225430918|ref|XP_002270435.1| (e_value=2e-96) PREDICTED: protein KRI1 homolog [Vitis vinifera];; (*SWP) sp|Q6DRJ4|KRI1_DANRE (e_value=6e-13) Protein KRI1 homolog OS=Danio rerio GN=kri1 PE=2 SV=1;; (*TAIR) AT3G24080.2 (e_value=5e-58) | Symbols: | KRR1 family protein | chr3:8695191-8697107 REVERSE LENGTH=630;; (*ITAG) Solyc07g064350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63761602-63763458 transcript_region:SL2.40ch07:63761602..63763458- functional_description:"Protein KRI1 homolog (AHRD V1 *--- KRI1_BOVIN); contains Interpro domain(s) IPR007851 KRR1 interacting protein 1, subgroup "; NbS00015071g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.14|1|0.33|0.28|7|0|968; (*GB) gi|147784458|emb|CAN72729.1| (e_value=0.0) hypothetical protein VITISV_029567 [Vitis vinifera];; (*SWP) sp|O65238|Y5537_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2;; (*TAIR) AT5G35370.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr5:13588564-13591182 REVERSE LENGTH=872;; (*ITAG) Solyc04g015460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5667893-5670819 transcript_region:SL2.40ch04:5667893..5670819+ go_terms:GO:0005515 functional_description:"S-receptor kinase (AHRD V1 ***- Q9FZP3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00015071g0010.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.66|0|0.33|3|0|109 NbS00015071g0105.1 protein AED:0.11 eAED:0.11 QI:307|0.66|0.76|1|0.41|0.53|13|179|691 NbS00029719g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0.33|1|1|1|3|0|194; (*GB) gi|224141911|ref|XP_002324304.1| (e_value=1e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|O49377|VA711_ARATH (e_value=1e-123) Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2;; (*TAIR) AT4G32150.1 (e_value=1e-124) | Symbols: VAMP711, ATVAMP711 | vesicle-associated membrane protein 711 | chr4:15526407-15527651 REVERSE LENGTH=219;; (*ITAG) Solyc06g065950.2.1 (e_value=2e-134) genomic_reference:SL2.40ch06 gene_region:37723806-37727182 transcript_region:SL2.40ch06:37723806..37727182- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7C (AHRD V1 **-- D7MAR2_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00029719g0003.1 protein AED:0.53 eAED:0.99 QI:66|0|0|0.5|0|0|2|0|76 NbS00010048g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=1e-69) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=3e-40) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc03g032230.1.1 (e_value=3e-138) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9028748-9029764 transcript_region:SL2.40ch03:9028748..9029764+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00010048g0007.1 protein AED:0.09 eAED:0.09 QI:237|1|1|1|0.9|0.90|11|270|426; (*GB) gi|350537521|ref|NP_001233786.1| (e_value=0.0) cyclin B2 [Solanum lycopersicum];; (*SWP) sp|P46277|CCNB1_MEDSV (e_value=0.0) G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1;; (*TAIR) AT1G20610.1 (e_value=1e-174) | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429;; (*ITAG) Solyc03g032190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00010048g0009.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0|0|3|0|235; (*GB) gi|255557494|ref|XP_002519777.1| (e_value=1e-70) 50S ribosomal protein L16, putative [Ricinus communis];; (*SWP) sp|Q33BZ5|RK16_NICTO (e_value=1e-54) 50S ribosomal protein L16, chloroplastic OS=Nicotiana tomentosiformis GN=rpl16 PE=3 SV=1;; (*ITAG) ATCG00790.1 (e_value=7e-50) | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652 REVERSE LENGTH=135;; (*ITAG) Solyc01g007590.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:1877388-1878459 transcript_region:SL2.40ch01:1877388..1878459- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L14 chloroplastic (AHRD V1 ***- D3WBB8_9BORA); contains Interpro domain(s) IPR005745 Ribosomal protein L14, bacterial-type "; GO:0005840,GO:0015934 NbS00010048g0010.1 protein AED:0.43 eAED:0.58 QI:0|0|0|1|0|0|2|0|89; (*GB) gi|57013920|ref|YP_173393.1| (e_value=6e-17) hypothetical protein NitaMp047 [Nicotiana tabacum]; NbS00030315g0007.1 protein AED:0.22 eAED:0.26 QI:0|0.5|0.66|1|1|1|3|567|296; (*GB) gi|225433744|ref|XP_002267358.1| (e_value=3e-22) PREDICTED: F-box protein CPR30 [Vitis vinifera];; (*ITAG) Solyc11g012540.1.1 (e_value=4e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030315g0009.1 protein AED:0.33 eAED:0.34 QI:0|0.33|0|0.75|0.33|0.5|4|0|176; (*GB) gi|388497846|gb|AFK36989.1| (e_value=6e-13) unknown [Medicago truncatula];; (*TAIR) AT4G16380.1 (e_value=8e-11) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:9254638-9255955 FORWARD LENGTH=254;; (*ITAG) Solyc05g054210.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:63317491-63319450 transcript_region:SL2.40ch05:63317491..63319450- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00030315g0008.1 protein AED:0.32 eAED:0.61 QI:0|0|0|1|0|0|3|0|124 NbS00018200g0002.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.2|1|1|5|0|384 NbS00018200g0008.1 protein AED:0.38 eAED:0.41 QI:0|0.33|0.5|1|1|1|4|218|186 NbS00035586g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|316|102; (*GB) gi|224103445|ref|XP_002313060.1| (e_value=4e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT4G36720.1 (e_value=1e-14) | Symbols: HVA22K | HVA22-like protein K | chr4:17307769-17309668 FORWARD LENGTH=200;; (*ITAG) Solyc03g110920.2.1 (e_value=1e-40) genomic_reference:SL2.40ch03 gene_region:55700438-55706941 transcript_region:SL2.40ch03:55700438..55706941- go_terms:GO:0005515 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 *--- C3KJ86_ANOFI); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0005515 NbS00035586g0006.1 protein AED:0.16 eAED:0.16 QI:157|1|0.66|1|0|0|3|0|77; (*GB) gi|359475272|ref|XP_002280949.2| (e_value=4e-32) PREDICTED: HVA22-like protein k-like [Vitis vinifera];; (*SWP) sp|Q6NLY8|HA22K_ARATH (e_value=4e-27) HVA22-like protein k OS=Arabidopsis thaliana GN=HVA22K PE=2 SV=1;; (*TAIR) AT4G36720.1 (e_value=3e-28) | Symbols: HVA22K | HVA22-like protein K | chr4:17307769-17309668 FORWARD LENGTH=200;; (*ITAG) Solyc03g110920.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:55700438-55706941 transcript_region:SL2.40ch03:55700438..55706941- go_terms:GO:0005515 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 *--- C3KJ86_ANOFI); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0005515 NbS00035586g0008.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|59 NbS00035586g0009.1 protein AED:0.28 eAED:0.38 QI:0|0|0|1|0|0|3|0|129 NbS00024339g0014.1 protein AED:0.08 eAED:0.17 QI:0|0.25|0.2|1|0.5|0.4|5|361|502; (*GB) gi|225430840|ref|XP_002273483.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254794 [Vitis vinifera];; (*TAIR) AT4G36790.1 (e_value=3e-180) | Symbols: | Major facilitator superfamily protein | chr4:17336360-17338304 FORWARD LENGTH=489;; (*ITAG) Solyc02g063020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29620807-29622938 transcript_region:SL2.40ch02:29620807..29622938+ go_terms:GO:0005351 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 ***- A4FJQ9_SACEN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00024339g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|80 NbS00024339g0004.1 protein AED:0.11 eAED:0.12 QI:210|0.76|0.78|1|0.92|0.85|14|944|659; (*GB) gi|359488395|ref|XP_002279583.2| (e_value=9e-123) PREDICTED: uncharacterized protein LOC100265150 [Vitis vinifera];; (*SWP) sp|Q96GN5|CDA7L_HUMAN (e_value=1e-26) Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2;; (*TAIR) AT1G67780.1 (e_value=1e-55) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 protein | chr1:25412816-25415530 FORWARD LENGTH=512;; (*ITAG) Solyc02g063060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29676109-29681253 transcript_region:SL2.40ch02:29676109..29681253- functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- Q28DP7_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00024339g0015.1 protein AED:0.24 eAED:0.25 QI:0|0.4|0.33|1|0.2|0.16|6|203|273; (*GB) gi|356567180|ref|XP_003551799.1| (e_value=4e-80) PREDICTED: uncharacterized protein LOC100786993 [Glycine max];; (*TAIR) AT3G02500.1 (e_value=3e-60) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16030.1); Has 49 Blast hits to 49 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:519364-521628 FORWARD LENGTH=293;; (*ITAG) Solyc02g063030.2.1 (e_value=3e-120) genomic_reference:SL2.40ch02 gene_region:29625469-29629342 transcript_region:SL2.40ch02:29625469..29629342- functional_description:"LuxR family transcriptional regulator (Fragment) (AHRD V1 *-*- D9ZBL3_9CARY)"; NbS00002978g0001.1 protein AED:0.24 eAED:0.53 QI:78|0|0|1|0|0|2|0|41 NbS00002978g0102.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|282 NbS00002978g0108.1 protein AED:0.05 eAED:0.05 QI:0|0.71|0.62|1|0.71|0.87|8|0|604 NbS00061431g0001.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|225441106|ref|XP_002264566.1| (e_value=2e-42) PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera];; (*TAIR) AT3G53140.1 (e_value=2e-42) | Symbols: | O-methyltransferase family protein | chr3:19695692-19697355 FORWARD LENGTH=359;; (*ITAG) Solyc10g085830.1.1 (e_value=1e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64223677-64226056 transcript_region:SL2.40ch10:64223677..64226056+ go_terms:GO:0008171 functional_description:"O-methyltransferase 1 (AHRD V1 ***- D7MTQ7_ARALY); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171 NbC26057631g0003.1 protein AED:0.63 eAED:0.86 QI:0|0|0|1|1|1|2|0|71; (*ITAG) Solyc06g082810.2.1 (e_value=3e-13) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbS00055904g0002.1 protein AED:0.38 eAED:0.39 QI:22|1|0.5|1|1|0.5|2|0|154; (*GB) gi|296082572|emb|CBI21577.3| (e_value=2e-68) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=9e-66) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.5 (e_value=1e-68) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16798332 REVERSE LENGTH=542;; (*ITAG) Solyc03g032040.2.1 (e_value=8e-79) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00002249g0002.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|177|369 NbS00002249g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|411 NbS00002249g0007.1 protein AED:0.20 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|405; (*GB) gi|225428272|ref|XP_002279565.1| (e_value=4e-71) PREDICTED: zinc finger protein ZAT3 [Vitis vinifera];; (*SWP) sp|O65499|ZAT3_ARATH (e_value=1e-60) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT4G35280.1 (e_value=8e-62) | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283 REVERSE LENGTH=284;; (*ITAG) Solyc06g060480.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34901141-34901950 transcript_region:SL2.40ch06:34901141..34901950- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00027222g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|268|514; (*GB) gi|225426178|ref|XP_002279187.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267372 [Vitis vinifera];; (*TAIR) AT5G41460.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524;; (*ITAG) Solyc08g081420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61656175-61659800 transcript_region:SL2.40ch08:61656175..61659800- go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00004728g0002.1 protein AED:0.00 eAED:0.00 QI:49|1|0.5|1|0|0|2|83|310; (*GB) gi|11994207|dbj|BAB01310.1| (e_value=2e-86) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=3e-88) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=2e-89) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc04g009170.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2671422-2672351 transcript_region:SL2.40ch04:2671422..2672351+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004728g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|350539934|ref|NP_001234581.1| (e_value=5e-112) TCP transcription factor 14 [Solanum lycopersicum];; (*SWP) sp|Q9FMX2|TCP7_ARATH (e_value=8e-73) Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1;; (*TAIR) AT5G23280.1 (e_value=6e-74) | Symbols: | TCP family transcription factor | chr5:7843017-7843769 FORWARD LENGTH=250;; (*ITAG) Solyc04g009180.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2687517-2688317 transcript_region:SL2.40ch04:2687517..2688317+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00060287g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.75|1|1|0.75|4|0|365; (*GB) gi|2605891|gb|AAC28947.1| (e_value=0.0) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=6e-155) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=6e-145) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g096730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63866593-63868349 transcript_region:SL2.40ch12:63866593..63868349+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- O22610_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00060287g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|1|0.66|0.5|4|0|679; (*GB) gi|225434429|ref|XP_002277574.1| (e_value=0.0) PREDICTED: cation/H(+) antiporter 3-like [Vitis vinifera];; (*SWP) sp|Q9FYC1|CHX4_ARATH (e_value=1e-133) Cation/H(+) antiporter 4 OS=Arabidopsis thaliana GN=CHX4 PE=2 SV=1;; (*TAIR) AT3G44900.1 (e_value=1e-134) | Symbols: ATCHX4, CHX4 | cation/H+ exchanger 4 | chr3:16388724-16391360 FORWARD LENGTH=817;; (*ITAG) Solyc12g036260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30201103-30203583 transcript_region:SL2.40ch12:30201103..30203583+ go_terms:GO:0016021 functional_description:"Cation/H(+) antiporter 4 (AHRD V1 ***- CHX4_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0016021 NbS00011224g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.2|0|0.72|0.5|0.45|11|0|839; (*GB) gi|224129520|ref|XP_002328737.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=4e-13) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=2e-28) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc02g021260.1.1 (e_value=1e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:13096096-13102938 transcript_region:SL2.40ch02:13096096..13102938+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 *-*- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00011224g0008.1 protein AED:0.28 eAED:0.35 QI:0|0|0|0.4|0.75|0.8|5|0|328; (*GB) gi|147787893|emb|CAN71750.1| (e_value=4e-23) hypothetical protein VITISV_040593 [Vitis vinifera];; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=4e-16) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=3e-17) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc02g065350.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:31128527-31130662 transcript_region:SL2.40ch02:31128527..31130662+ go_terms:GO:0003700,GO:0016564 functional_description:"B3 domain-containing transcription factor VRN1 (AHRD V1 *-** VRN1_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700,GO:0016564 NbS00031503g0005.1 protein AED:0.21 eAED:0.21 QI:230|1|1|1|1|1|3|272|191; (*GB) gi|225435694|ref|XP_002283442.1| (e_value=3e-57) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Vitis vinifera];; (*TAIR) AT2G44300.1 (e_value=9e-49) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc01g005990.2.1 (e_value=1e-86) genomic_reference:SL2.40ch01 gene_region:653649-655542 transcript_region:SL2.40ch01:653649..655542- functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9REN2_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00031503g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|224076008|ref|XP_002304870.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19860.1 (e_value=4e-43) | Symbols: | Protein of unknown function, DUF538 | chr5:6714533-6715837 REVERSE LENGTH=181;; (*ITAG) Solyc01g005980.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:650449-652528 transcript_region:SL2.40ch01:650449..652528- functional_description:"POT family domain containing protein expressed (AHRD V1 *-*- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00005781g0011.1 protein AED:0.01 eAED:0.01 QI:163|1|0.5|1|0|0|2|93|55 NbS00005781g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|154; (*GB) gi|334902911|gb|AEH25587.1| (e_value=5e-31) transposase [Solanum demissum];; (*ITAG) Solyc03g095560.1.1 (e_value=7e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:50208925-50209659 transcript_region:SL2.40ch03:50208925..50209659+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00005781g0003.1 protein AED:0.16 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|326 NbS00005781g0012.1 protein AED:0.37 eAED:0.37 QI:115|0.28|0.37|0.62|0.57|0.75|8|0|327; (*GB) gi|33667908|gb|AAQ24533.1| (e_value=4e-44) P18 [Solanum chacoense];; (*SWP) sp|O64644|SAP18_ARATH (e_value=7e-36) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=5e-37) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=8e-47) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ go_terms:GO:0003714 functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "; GO:0003714 NbS00052867g0004.1 protein AED:0.46 eAED:0.48 QI:0|0.66|0.5|0.75|0|0.25|4|265|169 NbS00016538g0002.1 protein AED:0.42 eAED:0.42 QI:0|1|0.66|1|1|1|6|0|166; (*GB) gi|225469994|ref|XP_002277989.1| (e_value=1e-113) PREDICTED: transmembrane protein 111 [Vitis vinifera];; (*SWP) sp|Q7SXW4|TM111_DANRE (e_value=4e-42) Transmembrane protein 111 OS=Danio rerio GN=tmem111 PE=2 SV=1;; (*TAIR) AT4G12590.1 (e_value=3e-114) | Symbols: | Protein of unknown function DUF106, transmembrane | chr4:7451291-7452976 REVERSE LENGTH=246;; (*ITAG) Solyc05g054100.2.1 (e_value=6e-117) genomic_reference:SL2.40ch05 gene_region:63220642-63224589 transcript_region:SL2.40ch05:63220642..63224589- go_terms:GO:0005515 functional_description:"Transmembrane protein 111 (AHRD V1 **-- TM111_DANRE); contains Interpro domain(s) IPR008568 Protein of unknown function DUF850, transmembrane eukaryotic "; GO:0005515 NbS00016538g0006.1 protein AED:0.45 eAED:0.70 QI:0|0|0|1|1|1|2|0|95; (*GB) gi|346464853|gb|AEO32271.1| (e_value=4e-24) hypothetical protein [Amblyomma maculatum];; (*TAIR) AT4G12590.1 (e_value=1e-23) | Symbols: | Protein of unknown function DUF106, transmembrane | chr4:7451291-7452976 REVERSE LENGTH=246;; (*ITAG) Solyc05g054100.2.1 (e_value=2e-27) genomic_reference:SL2.40ch05 gene_region:63220642-63224589 transcript_region:SL2.40ch05:63220642..63224589- go_terms:GO:0005515 functional_description:"Transmembrane protein 111 (AHRD V1 **-- TM111_DANRE); contains Interpro domain(s) IPR008568 Protein of unknown function DUF850, transmembrane eukaryotic "; GO:0005515 NbS00016538g0010.1 protein AED:0.21 eAED:0.21 QI:1503|0.5|0.71|1|0.16|0|7|449|200; (*GB) gi|255559080|ref|XP_002520562.1| (e_value=4e-46) ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis];; (*SWP) sp|Q3TIX9|SNUT2_MOUSE (e_value=6e-15) U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2;; (*TAIR) AT4G22285.1 (e_value=3e-47) | Symbols: | Ubiquitin C-terminal hydrolases superfamily protein | chr4:11779063-11781898 REVERSE LENGTH=541;; (*ITAG) Solyc02g068480.2.1 (e_value=1e-50) genomic_reference:SL2.40ch02 gene_region:32994749-33000085 transcript_region:SL2.40ch02:32994749..33000085- go_terms:GO:0005515,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7ME50_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0005515,GO:0004197 NbS00016538g0011.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|4|0|210; (*GB) gi|89473698|gb|ABD72661.1| (e_value=3e-143) pollen tube RhoGDI2 [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=8e-89) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=6e-90) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc05g054110.2.1 (e_value=2e-129) genomic_reference:SL2.40ch05 gene_region:63227023-63231557 transcript_region:SL2.40ch05:63227023..63231557+ go_terms:GO:0005094 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 **** Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005094 NbS00014058g0015.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.57|0.85|0.66|0.71|7|174|165; (*GB) gi|356538962|ref|XP_003537969.1| (e_value=3e-66) PREDICTED: protein phosphatase methylesterase 1-like [Glycine max];; (*SWP) sp|Q6CGE1|PPME1_YARLI (e_value=8e-26) Protein phosphatase methylesterase 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PPE1 PE=3 SV=1;; (*TAIR) AT4G10050.1 (e_value=1e-63) | Symbols: | esterase/lipase/thioesterase family protein | chr4:6284620-6287186 REVERSE LENGTH=350;; (*ITAG) Solyc11g042430.1.1 (e_value=4e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:31790631-31799565 transcript_region:SL2.40ch11:31790631..31799565- go_terms:GO:0051721,GO:0051722 functional_description:"Protein phosphatase methylesterase 1 (AHRD V1 **** B6TIL5_MAIZE); contains Interpro domain(s) IPR016812 Protein phosphatase methylesterase, eukaryotic "; GO:0051721,GO:0051722 NbS00014058g0004.1 protein AED:0.02 eAED:0.08 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|147767785|emb|CAN66974.1| (e_value=3e-76) hypothetical protein VITISV_022076 [Vitis vinifera];; (*SWP) sp|Q9FNN7|PP371_ARATH (e_value=2e-65) Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1;; (*TAIR) AT5G08510.1 (e_value=1e-66) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:2753099-2754731 FORWARD LENGTH=511;; (*ITAG) Solyc01g104090.2.1 (e_value=1e-48) genomic_reference:SL2.40ch01 gene_region:84319648-84321791 transcript_region:SL2.40ch01:84319648..84321791- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9F5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014058g0016.1 protein AED:0.27 eAED:0.27 QI:174|0.66|0.75|1|0.33|0.25|4|133|133; (*GB) gi|357126228|ref|XP_003564790.1| (e_value=1e-66) PREDICTED: cytochrome c-like [Brachypodium distachyon];; (*SWP) sp|P00052|CYC_VIGRR (e_value=5e-65) Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1;; (*TAIR) AT1G22840.1 (e_value=1e-64) | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:8079384-8080286 FORWARD LENGTH=114;; (*ITAG) Solyc11g042420.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:31786354-31788004 transcript_region:SL2.40ch11:31786354..31788004+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00014058g0014.1 protein AED:0.31 eAED:0.31 QI:244|0.90|0.83|1|1|1|12|0|407; (*GB) gi|225427147|ref|XP_002277288.1| (e_value=2e-174) PREDICTED: WD repeat-containing protein 74 [Vitis vinifera];; (*SWP) sp|Q58D06|WDR74_BOVIN (e_value=4e-24) WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1;; (*TAIR) AT1G29320.1 (e_value=3e-153) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:10255355-10258238 FORWARD LENGTH=468;; (*ITAG) Solyc08g008160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2626584-2636165 transcript_region:SL2.40ch08:2626584..2636165- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 74 (AHRD V1 *--- C1BRU4_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00036576g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.66|1|0.4|0.83|6|18|958; (*GB) gi|224073436|ref|XP_002304095.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=4e-56) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT1G74180.1 (e_value=6e-150) | Symbols: AtRLP14, RLP14 | receptor like protein 14 | chr1:27897197-27900908 REVERSE LENGTH=976;; (*ITAG) Solyc11g011180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4245081-4248862 transcript_region:SL2.40ch11:4245081..4248862- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00036576g0009.1 protein AED:0.26 eAED:0.28 QI:0|0.33|0.2|1|0.22|0.2|10|0|606; (*GB) gi|224073436|ref|XP_002304095.1| (e_value=5e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=9e-35) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT1G74190.1 (e_value=1e-67) | Symbols: AtRLP15, RLP15 | receptor like protein 15 | chr1:27902590-27906158 REVERSE LENGTH=965;; (*ITAG) Solyc11g011180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4245081-4248862 transcript_region:SL2.40ch11:4245081..4248862- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00036576g0011.1 protein AED:0.00 eAED:0.00 QI:48|1|1|1|0|0.33|3|393|82; (*GB) gi|359477318|ref|XP_003631963.1| (e_value=2e-27) PREDICTED: uncharacterized protein LOC100852500 [Vitis vinifera];; (*TAIR) AT5G18920.1 (e_value=5e-26) | Symbols: | Cox19-like CHCH family protein | chr5:6310095-6310623 FORWARD LENGTH=77; NbS00036576g0008.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|224113693|ref|XP_002332513.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SYQ8|CLV1_ARATH (e_value=5e-14) Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3;; (*TAIR) AT1G74180.1 (e_value=8e-27) | Symbols: AtRLP14, RLP14 | receptor like protein 14 | chr1:27897197-27900908 REVERSE LENGTH=976;; (*ITAG) Solyc11g011180.1.1 (e_value=5e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4245081-4248862 transcript_region:SL2.40ch11:4245081..4248862- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00047042g0004.1 protein AED:0.14 eAED:0.19 QI:80|0.75|0.69|1|0.66|0.69|13|0|523; (*GB) gi|356515685|ref|XP_003526529.1| (e_value=0.0) PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=7e-21) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09910.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc04g014430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4665390-4670951 transcript_region:SL2.40ch04:4665390..4670951- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00013315g0006.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|84 NbS00013315g0002.1 protein AED:0.07 eAED:0.09 QI:0|0|0.5|1|0|0.5|2|59|376; (*GB) gi|147788330|emb|CAN63309.1| (e_value=2e-45) hypothetical protein VITISV_017174 [Vitis vinifera];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=3e-24) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT3G02340.1 (e_value=4e-36) | Symbols: | RING/U-box superfamily protein | chr3:477032-478261 FORWARD LENGTH=409;; (*ITAG) Solyc02g065650.1.1 (e_value=3e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31384757-31385950 transcript_region:SL2.40ch02:31384757..31385950- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_BOVIN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00043191g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.33|0.83|1|1|6|535|166; (*GB) gi|255580004|ref|XP_002530836.1| (e_value=8e-79) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26840.2 (e_value=7e-68) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43910.1). | chr2:11447346-11448871 REVERSE LENGTH=326;; (*ITAG) Solyc01g008700.2.1 (e_value=4e-87) genomic_reference:SL2.40ch01 gene_region:2746555-2751492 transcript_region:SL2.40ch01:2746555..2751492- functional_description:"cDNA clone 001-102-C05 full insert sequence (AHRD V1 **-- B7E7M9_ORYSJ)"; NbS00013020g0011.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|143; (*GB) gi|77552617|gb|ABA95414.1| (e_value=4e-25) transposon protein, putative, unclassified [Oryza sativa Japonica Group];; (*SWP) sp|Q9SWG3|FAR1_ARATH (e_value=6e-19) Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1;; (*TAIR) AT4G15090.1 (e_value=5e-20) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827;; (*ITAG) Solyc11g018650.1.1 (e_value=3e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8853241-8853468 transcript_region:SL2.40ch11:8853241..8853468- functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 **-- FRS8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00013020g0010.1 protein AED:0.71 eAED:0.76 QI:0|0|0|0.66|0.5|0.66|3|0|153 NbS00020909g0010.1 protein AED:0.00 eAED:0.05 QI:25|1|0.5|1|1|1|2|79|145; (*GB) gi|255579757|ref|XP_002530717.1| (e_value=7e-49) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|P59468|LBD24_ARATH (e_value=1e-46) LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1;; (*TAIR) AT3G26660.1 (e_value=1e-47) | Symbols: LBD24 | LOB domain-containing protein 24 | chr3:9797136-9797610 REVERSE LENGTH=121;; (*ITAG) Solyc06g064540.1.1 (e_value=4e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:36602085-36602944 transcript_region:SL2.40ch06:36602085..36602944- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00020909g0009.1 protein AED:0.27 eAED:0.35 QI:0|1|0|1|1|1|2|0|338; (*GB) gi|255569070|ref|XP_002525504.1| (e_value=6e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G10080.1 (e_value=1e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13530.1); Has 120 Blast hits to 114 proteins in 21 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 12; Plants - 100; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:6300454-6302560 REVERSE LENGTH=325;; (*ITAG) Solyc07g063050.1.1 (e_value=7e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:62863155-62863988 transcript_region:SL2.40ch07:62863155..62863988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020909g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|359493576|ref|XP_003634629.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q00874|DR100_ARATH (e_value=6e-39) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT1G33590.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:12177788-12179221 FORWARD LENGTH=477;; (*ITAG) Solyc10g052880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49565421-49566857 transcript_region:SL2.40ch10:49565421..49566857+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00020909g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|383; (*GB) gi|255543106|ref|XP_002512616.1| (e_value=2e-121) interferon-induced GTP-binding protein mx, putative [Ricinus communis];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=4e-101) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=3e-102) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc04g072030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56696025-56698052 transcript_region:SL2.40ch04:56696025..56698052+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbC23727185g0001.1 protein AED:0.09 eAED:0.09 QI:10|1|0|1|0|0|2|0|57 NbS00008760g0105.1 protein AED:0.37 eAED:0.37 QI:56|1|0.75|1|1|1|4|0|177 NbS00008760g0215.1 protein AED:0.06 eAED:0.06 QI:232|0.75|0.8|1|0.25|0.2|5|292|161 NbS00008760g0203.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|402 NbS00008760g0206.1 protein AED:0.30 eAED:0.30 QI:319|0.77|1|1|1|1|10|353|374 NbS00008760g0210.1 protein AED:0.37 eAED:0.38 QI:58|1|0.75|1|1|1|4|0|178 NbS00017883g0003.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|198; (*GB) gi|238909247|gb|ACR77745.1| (e_value=1e-46) cytochrome oxidase subunit 2 [Capsicum annuum];; (*SWP) sp|P05491|COX2_SOYBN (e_value=2e-42) Cytochrome c oxidase subunit 2 OS=Glycine max GN=COX2 PE=3 SV=2;; (*ITAG) ATMG00160.1 (e_value=7e-42) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=4e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbS00030511g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.86|0.83|0.95|0.82|0.87|24|357|890; (*GB) gi|224127228|ref|XP_002320019.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9R1C7|PR40A_MOUSE (e_value=5e-42) Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1;; (*TAIR) AT1G44910.2 (e_value=0.0) | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | chr1:16975930-16982647 FORWARD LENGTH=926;; (*ITAG) Solyc11g044340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35464518-35474836 transcript_region:SL2.40ch11:35464518..35474836- go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 **-- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00034043g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0.94|1|0.75|0.82|17|0|956; (*GB) gi|292677821|dbj|BAI99252.1| (e_value=0.0) trehalose 6-phosphate synthase [Nicotiana tabacum];; (*SWP) sp|Q9SYM4|TPS1_ARATH (e_value=0.0) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1;; (*TAIR) AT1G78580.1 (e_value=0.0) | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552495-29557482 REVERSE LENGTH=942;; (*ITAG) Solyc07g062140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62163652-62177066 transcript_region:SL2.40ch07:62163652..62177066- go_terms:GO:0003825 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR012766 Alpha,alpha-trehalose-phosphate synthase "; GO:0003825 NbS00034043g0017.1 protein AED:0.17 eAED:0.20 QI:0|0.25|0|1|0.25|0.2|5|0|740; (*GB) gi|225461808|ref|XP_002285634.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc07g062130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62160950-62163332 transcript_region:SL2.40ch07:62160950..62163332+ go_terms:GO:0050377,GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-** B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050377,GO:0010280 NbS00034043g0016.1 protein AED:0.31 eAED:0.31 QI:316|1|0.8|1|0.75|0.8|5|0|311; (*GB) gi|332371924|dbj|BAK22412.1| (e_value=1e-153) NAD kinase [Nicotiana benthamiana];; (*SWP) sp|Q500Y9|NADHK_ARATH (e_value=2e-133) NADH kinase OS=Arabidopsis thaliana GN=NADK3 PE=1 SV=1;; (*TAIR) AT1G78590.1 (e_value=1e-134) | Symbols: NADK3, ATNADK-3 | NAD(H) kinase 3 | chr1:29564343-29566128 FORWARD LENGTH=317;; (*ITAG) Solyc07g062150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62185205-62189970 transcript_region:SL2.40ch07:62185205..62189970+ go_terms:GO:0042736,GO:0003951 functional_description:"ATP-NAD kinase-like protein (AHRD V1 **** B4YIN2_9EURY); contains Interpro domain(s) IPR016064 ATP-NAD kinase, PpnK-type "; GO:0042736,GO:0003951 NbS00043814g0002.1 protein AED:0.00 eAED:0.00 QI:101|1|1|1|0|0|5|222|300; (*GB) gi|359475342|ref|XP_003631664.1| (e_value=3e-112) PREDICTED: putative aminoacrylate hydrolase RutD-like isoform 1 [Vitis vinifera];; (*TAIR) AT2G18360.1 (e_value=1e-105) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:7976848-7979221 REVERSE LENGTH=313;; (*ITAG) Solyc01g109720.2.1 (e_value=4e-171) genomic_reference:SL2.40ch01 gene_region:88365648-88367749 transcript_region:SL2.40ch01:88365648..88367749- go_terms:GO:0003824 functional_description:"Hydrolase-like (AHRD V1 ***- Q5VNP5_ORYSJ); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00008511g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|66274401|gb|AAY43976.1| (e_value=4e-64) glycine rich protein-interacting protein [Nicotiana tabacum];; (*ITAG) Solyc12g006260.1.1 (e_value=5e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:774625-775032 transcript_region:SL2.40ch12:774625..775032- functional_description:"Glycine rich protein-interacting protein (AHRD V1 ***- Q4U602_TOBAC)"; NbS00019701g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.90|0.83|1|0.54|0.66|12|664|387; (*GB) gi|225430880|ref|XP_002269581.1| (e_value=8e-62) PREDICTED: protein DA1-related 1-like [Vitis vinifera];; (*SWP) sp|Q8W4F0|DAR1_ARATH (e_value=2e-61) Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3;; (*TAIR) AT4G36860.1 (e_value=2e-62) | Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553;; (*ITAG) Solyc01g105180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85211483-85216375 transcript_region:SL2.40ch01:85211483..85216375+ go_terms:GO:0043130 functional_description:"LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR)"; GO:0043130 NbS00006800g0012.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|0.75|1|1|4|0|181; (*GB) gi|356576263|ref|XP_003556252.1| (e_value=9e-76) PREDICTED: uncharacterized protein LOC100782087 [Glycine max];; (*TAIR) AT1G04560.1 (e_value=5e-77) | Symbols: | AWPM-19-like family protein | chr1:1245070-1245888 FORWARD LENGTH=186;; (*ITAG) Solyc05g053160.2.1 (e_value=2e-87) genomic_reference:SL2.40ch05 gene_region:62438344-62440293 transcript_region:SL2.40ch05:62438344..62440293- functional_description:"Plasma membrane associated protein (AHRD V1 ***- B6SJ93_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00010438g0009.1 protein AED:0.12 eAED:0.12 QI:142|1|1|1|1|1|6|443|243; (*GB) gi|115485231|ref|NP_001067759.1| (e_value=1e-155) Os11g0312400 [Oryza sativa Japonica Group];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=4e-157) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G63400.1 (e_value=5e-148) | Symbols: ADK1 | adenylate kinase 1 | chr5:25393274-25394817 REVERSE LENGTH=246;; (*ITAG) Solyc03g111200.2.1 (e_value=4e-169) genomic_reference:SL2.40ch03 gene_region:55891362-55895244 transcript_region:SL2.40ch03:55891362..55895244- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00006459g0008.1 protein AED:0.02 eAED:0.02 QI:101|1|1|1|1|1|2|63|227; (*GB) gi|37147908|gb|AAQ88401.1| (e_value=2e-63) HD-ZIP [Capsicum annuum];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=2e-32) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.2 (e_value=1e-33) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=256;; (*ITAG) Solyc06g053220.2.1 (e_value=6e-92) genomic_reference:SL2.40ch06 gene_region:32439567-32440801 transcript_region:SL2.40ch06:32439567..32440801- go_terms:GO:0006265,GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- B8YIB0_MIRJA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006265,GO:0005634,GO:0006355,GO:0045449 NbS00006459g0005.1 protein AED:0.65 eAED:0.65 QI:0|0.25|0|0.4|1|1|5|0|67; (*SWP) sp|Q42202|RL40B_ARATH (e_value=8e-15) Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana GN=RPL40B PE=1 SV=2;; (*TAIR) AT3G52590.1 (e_value=6e-16) | Symbols: UBQ1, EMB2167, ERD16, HAP4 | ubiquitin extension protein 1 | chr3:19505668-19506681 FORWARD LENGTH=128;; (*ITAG) Solyc08g008590.2.1 (e_value=5e-16) genomic_reference:SL2.40ch08 gene_region:2962192-2966912 transcript_region:SL2.40ch08:2962192..2966912+ go_terms:GO:0043008 functional_description:"Ubiquitin (AHRD V1 ***- C0SFI2_PARBP); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0043008 NbS00009440g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.61|0.92|1|1|13|0|466; (*GB) gi|255545164|ref|XP_002513643.1| (e_value=2e-178) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LTD8|Y5279_ARATH (e_value=4e-170) DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2;; (*TAIR) AT5G52790.1 (e_value=3e-171) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr5:21391740-21394327 REVERSE LENGTH=500;; (*ITAG) Solyc03g007570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:2124725-2127909 transcript_region:SL2.40ch03:2124725..2127909- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_SALTY); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00008563g0004.1 protein AED:0.32 eAED:0.32 QI:922|0.77|0.9|0.9|0.88|0.8|10|0|188; (*GB) gi|255561642|ref|XP_002521831.1| (e_value=5e-70) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G35470.1 (e_value=7e-57) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr1:13051636-13054922 REVERSE LENGTH=465;; (*ITAG) Solyc03g033380.2.1 (e_value=8e-97) genomic_reference:SL2.40ch03 gene_region:9216291-9232662 transcript_region:SL2.40ch03:9216291..9232662- go_terms:GO:0008536 functional_description:"Ran-binding protein 9 (AHRD V1 **-* B6UAR9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008536 NbS00008563g0009.1 protein AED:0.19 eAED:0.20 QI:0|0.86|0.78|1|0.77|0.86|23|0|909; (*GB) gi|359485642|ref|XP_002271447.2| (e_value=0.0) PREDICTED: protein argonaute 16-like [Vitis vinifera];; (*SWP) sp|Q6YSJ5|AGO16_ORYSJ (e_value=0.0) Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2;; (*TAIR) AT2G27040.2 (e_value=0.0) | Symbols: AGO4 | Argonaute family protein | chr2:11536795-11541503 REVERSE LENGTH=924;; (*ITAG) Solyc07g049500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57093533-57104122 transcript_region:SL2.40ch07:57093533..57104122- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00008499g0018.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.6|1|0.5|0.6|5|0|111; (*GB) gi|193290666|gb|ACF17641.1| (e_value=3e-55) putative branched-chain alpha-keto acid dehydrogenase E1 beta subunit [Capsicum annuum];; (*SWP) sp|P21839|ODBB_BOVIN (e_value=6e-30) 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2;; (*TAIR) AT3G13450.1 (e_value=3e-53) | Symbols: DIN4 | Transketolase family protein | chr3:4382340-4384295 REVERSE LENGTH=358;; (*ITAG) Solyc01g028900.2.1 (e_value=4e-56) genomic_reference:SL2.40ch01 gene_region:33896708-33906524 transcript_region:SL2.40ch01:33896708..33906524- go_terms:GO:0008152 functional_description:"1-deoxy-D-xylulose-5-phosphate synthase (AHRD V1 **-- DXS_DESAP); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0008152 NbS00008499g0019.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.66|1|1|3|0|106 NbS00008499g0008.1 protein AED:0.77 eAED:0.93 QI:12|0|0.33|0.66|1|1|3|0|148; (*GB) gi|225452161|ref|XP_002263932.1| (e_value=3e-32) PREDICTED: protein TPLATE-like [Vitis vinifera];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=5e-29) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=4e-30) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=5e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00008499g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|232; (*GB) gi|57013999|ref|YP_173470.1| (e_value=4e-128) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=1e-98) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=4e-104) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=2e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00061360g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|8|395|248; (*GB) gi|29839371|sp|Q8RX97.1|FRI1_TOBAC (e_value=5e-169) RecName: Full=Ferritin-1, chloroplastic; AltName: Full=NtFer1; Flags: Precursor;; (*SWP) sp|Q8RX97|FRI1_TOBAC (e_value=2e-170) Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1;; (*TAIR) AT2G40300.1 (e_value=1e-119) | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831501-16833214 REVERSE LENGTH=259;; (*ITAG) Solyc06g050980.2.1 (e_value=3e-140) genomic_reference:SL2.40ch06 gene_region:30550363-30552503 transcript_region:SL2.40ch06:30550363..30552503+ go_terms:GO:0008198,GO:0042802 functional_description:"Ferritin (AHRD V1 ***- Q308A9_SOLTU); contains Interpro domain(s) IPR001519 Ferritin, N-terminal "; GO:0008198,GO:0042802 NbS00021399g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|0.33|0.5|4|0|190; (*GB) gi|76573371|gb|ABA46790.1| (e_value=7e-128) 60S ribosomal protein L13a-like protein [Solanum tuberosum];; (*SWP) sp|Q9FKC0|R13A4_ARATH (e_value=3e-118) 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1;; (*TAIR) AT5G48760.2 (e_value=2e-119) | Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206;; (*ITAG) Solyc12g098330.1.1 (e_value=4e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64219819-64222066 transcript_region:SL2.40ch12:64219819..64222066+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00055396g0012.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|0.57|0.75|8|769|1586; (*GB) gi|359477348|ref|XP_002278432.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247619 [Vitis vinifera];; (*TAIR) AT1G05380.2 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr1:1577231-1582190 FORWARD LENGTH=1138;; (*ITAG) Solyc09g076010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63191720-63202894 transcript_region:SL2.40ch09:63191720..63202894+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00055396g0010.1 protein AED:0.22 eAED:0.22 QI:71|0.5|0.71|1|1|1|7|164|251; (*GB) gi|255552189|ref|XP_002517139.1| (e_value=4e-88) imidazoleglycerol-phosphate dehydratase his7, putative [Ricinus communis];; (*SWP) sp|Q43072|HIS7_PEA (e_value=4e-87) Imidazoleglycerol-phosphate dehydratase OS=Pisum sativum GN=HIS3 PE=2 SV=1;; (*TAIR) AT4G14910.3 (e_value=6e-88) | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr4:8528441-8530105 REVERSE LENGTH=282;; (*ITAG) Solyc09g076020.2.1 (e_value=1e-128) genomic_reference:SL2.40ch09 gene_region:63204638-63210368 transcript_region:SL2.40ch09:63204638..63210368+ go_terms:GO:0004424 functional_description:"Imidazoleglycerol-phosphate dehydratase (AHRD V1 **** B9RTS0_RICCO); contains Interpro domain(s) IPR000807 Imidazole glycerol-phosphate dehydratase "; GO:0004424 NbS00055396g0004.1 protein AED:0.28 eAED:0.28 QI:188|0.4|0.5|1|0.8|0.83|6|251|205; (*GB) gi|225432660|ref|XP_002282406.1| (e_value=4e-68) PREDICTED: uncharacterized protein LOC100259756 isoform 1 [Vitis vinifera];; (*TAIR) AT1G05385.1 (e_value=4e-65) | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa protein-related | chr1:1582747-1583648 REVERSE LENGTH=199;; (*ITAG) Solyc09g076030.2.1 (e_value=7e-84) genomic_reference:SL2.40ch09 gene_region:63211160-63214384 transcript_region:SL2.40ch09:63211160..63214384- functional_description:"Chromosome 04 contig 1 DNA sequence (AHRD V1 *-*- Q01AH6_OSTTA)"; NbS00009187g0007.1 protein AED:0.17 eAED:0.16 QI:0|0.77|0.6|0.9|0.88|0.9|10|0|613; (*GB) gi|296082998|emb|CBI22299.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6KC79|NIPBL_HUMAN (e_value=9e-29) Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2;; (*TAIR) AT5G15540.1 (e_value=0.0) | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846;; (*ITAG) Solyc03g059420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:27055070-27066970 transcript_region:SL2.40ch03:27055070..27066970+ go_terms:GO:0008270,GO:0005488 functional_description:"Sister chromatid cohesion 2 (AHRD V1 **-- D7M7D7_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00037375g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|87 NbS00021635g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|377656755|gb|AFB73931.1| (e_value=8e-83) LAT52-like protein [Lycium barbarum];; (*SWP) sp|P13447|LAT52_SOLLC (e_value=3e-81) Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1;; (*TAIR) AT1G29140.1 (e_value=2e-18) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr1:10179029-10179811 FORWARD LENGTH=171;; (*ITAG) Solyc10g007270.2.1 (e_value=2e-82) genomic_reference:SL2.40ch10 gene_region:1680589-1682164 transcript_region:SL2.40ch10:1680589..1682164- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006040 Allergen Ole e 1, conserved site "; GO:0005615 NbS00014940g0018.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|0|0|3|0|335; (*GB) gi|255555559|ref|XP_002518816.1| (e_value=2e-179) gibberellin 20-oxidase, putative [Ricinus communis];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=6e-123) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.1 (e_value=4e-124) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11306601 FORWARD LENGTH=338;; (*ITAG) Solyc04g008670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2314687-2317056 transcript_region:SL2.40ch04:2314687..2317056+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **** B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00014940g0015.1 protein AED:0.19 eAED:0.20 QI:221|0.95|0.77|1|0.90|0.95|22|289|1422; (*GB) gi|296086345|emb|CBI31934.3| (e_value=6e-179) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G03150.1 (e_value=4e-90) | Symbols: emb1579 | ATP/GTP-binding protein family | chr2:952313-959004 FORWARD LENGTH=1340;; (*ITAG) Solyc04g008680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2318621-2333205 transcript_region:SL2.40ch04:2318621..2333205+ go_terms:GO:0005509 functional_description:"Cell division cycle and apoptosis regulator protein 1 (AHRD V1 *--- B0XGS6_CULQU); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00014940g0006.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|225458380|ref|XP_002281805.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100262482 [Vitis vinifera];; (*ITAG) Solyc04g079910.2.1 (e_value=7e-51) genomic_reference:SL2.40ch04 gene_region:61818808-61820555 transcript_region:SL2.40ch04:61818808..61820555- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00014940g0016.1 protein AED:0.15 eAED:0.15 QI:400|1|1|1|0.66|0.5|4|228|367; (*GB) gi|356538611|ref|XP_003537795.1| (e_value=8e-13) PREDICTED: uncharacterized protein LOC100796529 [Glycine max];; (*ITAG) Solyc04g009160.2.1 (e_value=3e-180) genomic_reference:SL2.40ch04 gene_region:2660331-2668727 transcript_region:SL2.40ch04:2660331..2668727- functional_description:"Unknown Protein (AHRD V1)"; NbS00014940g0017.1 protein AED:0.36 eAED:0.36 QI:359|0.6|0.66|1|0.6|0.83|6|0|244; (*GB) gi|359473668|ref|XP_002272777.2| (e_value=4e-62) PREDICTED: uncharacterized protein LOC100261483 [Vitis vinifera];; (*TAIR) AT1G60670.2 (e_value=4e-48) | Symbols: | Protein of unknown function (DUF3755) | chr1:22344099-22347140 FORWARD LENGTH=254;; (*ITAG) Solyc04g008690.2.1 (e_value=9e-92) genomic_reference:SL2.40ch04 gene_region:2333617-2343002 transcript_region:SL2.40ch04:2333617..2343002- functional_description:"cDNA clone J013057D02 full insert sequence (AHRD V1 **-- B7EBX1_ORYSJ)"; NbS00027865g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|0.66|0.5|0.66|3|0|76 NbC24153167g0001.1 protein AED:0.05 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|359483726|ref|XP_002266522.2| (e_value=1e-46) PREDICTED: dof zinc finger protein DOF1.5-like [Vitis vinifera];; (*SWP) sp|P68350|DOF15_ARATH (e_value=4e-35) Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1;; (*TAIR) AT1G29160.1 (e_value=3e-36) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:10183797-10184324 REVERSE LENGTH=175;; (*ITAG) Solyc02g076850.1.1 (e_value=5e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36554226-36554717 transcript_region:SL2.40ch02:36554226..36554717+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00016866g0001.1 protein AED:0.21 eAED:0.21 QI:447|1|1|1|0.87|0.82|17|622|842; (*GB) gi|417488|sp|P32811.1|PHSH_SOLTU (e_value=0.0) RecName: Full=Alpha-glucan phosphorylase, H isozyme; AltName: Full=Starch phosphorylase H;; (*SWP) sp|P32811|PHSH_SOLTU (e_value=0.0) Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G46970.1 (e_value=0.0) | Symbols: ATPHS2, PHS2 | alpha-glucan phosphorylase 2 | chr3:17301625-17306111 REVERSE LENGTH=841;; (*ITAG) Solyc09g031970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:25052011-25067170 transcript_region:SL2.40ch09:25052011..25067170+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9HP81_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00051535g0006.1 protein AED:0.27 eAED:0.58 QI:0|0|0|1|0|0.5|2|0|65 NbS00051535g0007.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.5|0|0|2|0|89 NbS00010696g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|365222904|gb|AEW69804.1| (e_value=4e-49) Hop-interacting protein THI043 [Solanum lycopersicum];; (*TAIR) AT5G14970.1 (e_value=1e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 579 Blast hits to 397 proteins in 95 species: Archae - 0; Bacteria - 294; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:4847368-4848760 FORWARD LENGTH=355;; (*ITAG) Solyc02g087340.2.1 (e_value=7e-52) genomic_reference:SL2.40ch02 gene_region:44349601-44352908 transcript_region:SL2.40ch02:44349601..44352908+ functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00010696g0007.1 protein AED:0.70 eAED:0.83 QI:0|0|0|0.25|0|0.5|4|0|112 NbS00022735g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|255571859|ref|XP_002526872.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O04203|HSPR2_ARATH (e_value=5e-173) Nematode resistance protein-like HSPRO2 OS=Arabidopsis thaliana GN=HSPRO2 PE=1 SV=1;; (*TAIR) AT2G40000.1 (e_value=3e-174) | Symbols: HSPRO2, ATHSPRO2 | ortholog of sugar beet HS1 PRO-1 2 | chr2:16700649-16701956 REVERSE LENGTH=435; NbS00031919g0007.1 protein AED:0.05 eAED:0.05 QI:67|1|0.8|1|1|1|5|0|380; (*GB) gi|255546301|ref|XP_002514210.1| (e_value=0.0) Pectinesterase PPE8B precursor, putative [Ricinus communis];; (*SWP) sp|Q8VYZ3|PME53_ARATH (e_value=0.0) Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1;; (*TAIR) AT5G19730.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383;; (*ITAG) Solyc12g008530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1935700-1941362 transcript_region:SL2.40ch12:1935700..1941362- go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9RKG6_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00031919g0008.1 protein AED:0.06 eAED:0.06 QI:9|1|0.66|1|0.5|0.66|3|0|433; (*GB) gi|359484332|ref|XP_002280341.2| (e_value=5e-105) PREDICTED: uncharacterized protein LOC100245766 [Vitis vinifera];; (*TAIR) AT3G16490.1 (e_value=1e-56) | Symbols: IQD26 | IQ-domain 26 | chr3:5603962-5605489 REVERSE LENGTH=389;; (*ITAG) Solyc12g008520.1.1 (e_value=2e-150) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1931971-1934807 transcript_region:SL2.40ch12:1931971..1934807+ functional_description:"Calmodulin-binding family protein (AHRD V1 **-- Q9ZU28_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00043497g0006.1 protein AED:0.19 eAED:0.20 QI:0|1|0.87|1|1|1|8|0|397; (*GB) gi|2493810|sp|Q42946.1|HEM6_TOBAC (e_value=0.0) RecName: Full=Coproporphyrinogen-III oxidase, chloroplastic; Short=Coprogen oxidase; Short=Coproporphyrinogenase; Flags: Precursor;; (*SWP) sp|Q42946|HEM6_TOBAC (e_value=0.0) Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1;; (*TAIR) AT1G03475.1 (e_value=0.0) | Symbols: LIN2, HEMF1, ATCPO-I | Coproporphyrinogen III oxidase | chr1:869302-871175 REVERSE LENGTH=386;; (*ITAG) Solyc10g005110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:96242-103626 transcript_region:SL2.40ch10:96242..103626- go_terms:GO:0042803 functional_description:"Coproporphyrinogen III oxidase aerobic (AHRD V1 ***- A9DTF4_9FLAO); contains Interpro domain(s) IPR001260 Coproporphyrinogen III oxidase "; GO:0042803 NbS00043497g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|554; (*GB) gi|128592|sp|P29162.1|ASOL_TOBAC (e_value=0.0) RecName: Full=L-ascorbate oxidase homolog; AltName: Full=Pollen-specific protein NTP303; Flags: Precursor;; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55560.1 (e_value=0.0) | Symbols: sks14 | SKU5 similar 14 | chr1:20754474-20756527 REVERSE LENGTH=549;; (*ITAG) Solyc01g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:46194291-46196312 transcript_region:SL2.40ch01:46194291..46196312+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0055114 NbS00012472g0001.1 protein AED:0.16 eAED:0.16 QI:2355|1|0.66|1|0|0|3|721|137; (*GB) gi|356572813|ref|XP_003554560.1| (e_value=1e-47) PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like isoform 2 [Glycine max];; (*SWP) sp|O22899|DHX15_ARATH (e_value=2e-47) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1;; (*TAIR) AT2G47250.1 (e_value=1e-48) | Symbols: | RNA helicase family protein | chr2:19399923-19402981 REVERSE LENGTH=729;; (*ITAG) Solyc01g079250.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:70850920-70856753 transcript_region:SL2.40ch01:70850920..70856753- go_terms:GO:0004004 functional_description:"mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00018588g0004.1 protein AED:0.20 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|393; (*GB) gi|255547716|ref|XP_002514915.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FYF9|FB76_ARATH (e_value=8e-162) F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1;; (*TAIR) AT1G67340.1 (e_value=6e-163) | Symbols: | HCP-like superfamily protein with MYND-type zinc finger | chr1:25230323-25231622 FORWARD LENGTH=379;; (*ITAG) Solyc05g015420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10484003-10485747 transcript_region:SL2.40ch05:10484003..10485747- go_terms:GO:0005488,GO:0008270 functional_description:"MYND finger family protein expressed (AHRD V1 ***- Q2R448_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0008270 NbS00058382g0003.1 protein AED:0.07 eAED:0.18 QI:0|1|0|1|0.5|0.66|3|0|266; (*GB) gi|78191424|gb|ABB29933.1| (e_value=4e-116) P0 ribosomal protein-like [Solanum tuberosum];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=4e-114) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G11250.1 (e_value=2e-109) | Symbols: | Ribosomal protein L10 family protein | chr3:3521453-3522826 FORWARD LENGTH=323;; (*ITAG) Solyc05g054580.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:63611603-63614235 transcript_region:SL2.40ch05:63611603..63614235- go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7L9V8_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00023364g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|270; (*GB) gi|356506977|ref|XP_003522249.1| (e_value=2e-64) PREDICTED: protein NDR1-like [Glycine max];; (*TAIR) AT5G11890.1 (e_value=2e-37) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287;; (*ITAG) Solyc12g095980.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63414202-63415041 transcript_region:SL2.40ch12:63414202..63415041+ functional_description:"Harpin-induced 1 (AHRD V1 **-- A2Q440_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00023364g0004.1 protein AED:0.30 eAED:0.30 QI:393|0.75|0.8|1|0.5|0.8|5|0|303; (*GB) gi|2500518|sp|Q40465.1|IF411_TOBAC (e_value=3e-143) RecName: Full=Eukaryotic initiation factor 4A-11; Short=eIF-4A-11; AltName: Full=ATP-dependent RNA helicase eIF4A-11;; (*SWP) sp|Q40465|IF411_TOBAC (e_value=1e-144) Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=2e-132) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc08g062800.2.1 (e_value=4e-145) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00034458g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|0.75|0.66|0.75|4|155|375; (*GB) gi|350535953|ref|NP_001234478.1| (e_value=0.0) xyloglucan endotransglucosylase-hydrolase XTH9 precursor [Solanum lycopersicum];; (*SWP) sp|Q38911|XTH15_ARATH (e_value=4e-124) Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1;; (*TAIR) AT4G14130.1 (e_value=3e-125) | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase 15 | chr4:8137161-8138196 REVERSE LENGTH=289;; (*ITAG) Solyc07g055990.2.1 (e_value=2e-164) genomic_reference:SL2.40ch07 gene_region:61215070-61217037 transcript_region:SL2.40ch07:61215070..61217037+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 **** C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00023006g0106.1 protein AED:0.21 eAED:0.21 QI:39|1|1|1|1|1|7|338|199 NbS00023006g0209.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.5|0.83|0.4|0.66|6|11|364 NbS00047358g0008.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0.5|2|0|121; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=3e-17) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g005980.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3916175-3916960 transcript_region:SL2.40ch00:3916175..3916960+ functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00047358g0007.1 protein AED:0.37 eAED:0.37 QI:0|1|0.88|1|0.62|0.55|9|0|315; (*GB) gi|225460897|ref|XP_002278722.1| (e_value=0.0) PREDICTED: cell differentiation protein RCD1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q6P819|RCD1_XENTR (e_value=5e-142) Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1;; (*TAIR) AT3G20800.1 (e_value=0.0) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc12g014400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; NbS00034913g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|343; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=1e-53) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=1e-31) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc03g032230.1.1 (e_value=5e-95) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9028748-9029764 transcript_region:SL2.40ch03:9028748..9029764+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00017107g0011.1 protein AED:0.33 eAED:0.33 QI:0|1|0.33|1|1|0.33|3|0|146; (*GB) gi|359491022|ref|XP_003634205.1| (e_value=5e-79) PREDICTED: uncharacterized protein LOC100853969 [Vitis vinifera];; (*TAIR) AT1G18180.1 (e_value=1e-67) | Symbols: | Protein of unknown function (DUF1295) | chr1:6255903-6257737 FORWARD LENGTH=305;; (*ITAG) Solyc03g118830.2.1 (e_value=9e-91) genomic_reference:SL2.40ch03 gene_region:61682845-61687726 transcript_region:SL2.40ch03:61682845..61687726- go_terms:GO:0016021 functional_description:"Conserved transmembrane protein (AHRD V1 **-- A0PNM5_MYCUA); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00017107g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|712; (*GB) gi|225441965|ref|XP_002271048.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g18020-like [Vitis vinifera];; (*SWP) sp|Q9LSK8|PP240_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g18020 OS=Arabidopsis thaliana GN=At3g18020 PE=2 SV=1;; (*TAIR) AT3G18020.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:6165449-6167515 FORWARD LENGTH=688;; (*ITAG) Solyc03g118790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61665749-61668104 transcript_region:SL2.40ch03:61665749..61668104+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Y6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017107g0014.1 protein AED:0.20 eAED:0.20 QI:261|1|1|1|1|1|9|552|361; (*GB) gi|356544204|ref|XP_003540544.1| (e_value=5e-162) PREDICTED: splicing factor 3B subunit 4-like [Glycine max];; (*SWP) sp|Q15427|SF3B4_HUMAN (e_value=9e-115) Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1;; (*TAIR) AT2G18510.1 (e_value=7e-153) | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:8031554-8033517 REVERSE LENGTH=363;; (*ITAG) Solyc03g118800.2.1 (e_value=1e-168) genomic_reference:SL2.40ch03 gene_region:61670164-61674250 transcript_region:SL2.40ch03:61670164..61674250+ go_terms:GO:0017091 functional_description:"Polyadenylate-binding protein (AHRD V1 *--* B6K6T8_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0017091 NbS00017107g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0.5|1|0|0.5|2|261|166; (*GB) gi|14423648|sp|Q9M7R0.1|ALL8_OLEEU (e_value=3e-63) RecName: Full=Calcium-binding allergen Ole e 8; AltName: Full=PCA18/PCA23; AltName: Allergen=Ole e 8;; (*SWP) sp|Q9M7R0|ALL8_OLEEU (e_value=8e-65) Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1;; (*TAIR) AT1G18210.2 (e_value=7e-57) | Symbols: | Calcium-binding EF-hand family protein | chr1:6268273-6268785 REVERSE LENGTH=170;; (*ITAG) Solyc03g118810.1.1 (e_value=4e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:61676281-61676775 transcript_region:SL2.40ch03:61676281..61676775+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D8TKN5_VOLCA); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00017107g0016.1 protein AED:0.10 eAED:0.34 QI:224|0.81|0.58|1|0.63|0.91|12|207|702; (*GB) gi|357521611|ref|XP_003631094.1| (e_value=3e-133) Golgin candidate [Medicago truncatula];; (*SWP) sp|B0F9L7|GOGC2_ARATH (e_value=7e-117) Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1;; (*TAIR) AT1G18190.1 (e_value=5e-118) | Symbols: GC2 | golgin candidate 2 | chr1:6257963-6261325 REVERSE LENGTH=668; NbS00007847g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|162; (*GB) gi|225432240|ref|XP_002270819.1| (e_value=6e-82) PREDICTED: 50S ribosomal protein L18, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SX68|RK18_ARATH (e_value=9e-77) 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1;; (*TAIR) AT1G48350.1 (e_value=7e-78) | Symbols: | Ribosomal L18p/L5e family protein | chr1:17867269-17868215 FORWARD LENGTH=170;; (*ITAG) Solyc12g098890.1.1 (e_value=9e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64598713-64601622 transcript_region:SL2.40ch12:64598713..64601622- go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6TYR5_MAIZE); contains Interpro domain(s) IPR004389 Ribosomal protein L18, bacterial "; GO:0005840 NbS00007847g0008.1 protein AED:0.10 eAED:0.10 QI:290|1|1|1|0|0.5|2|375|77; (*GB) gi|225432216|ref|XP_002270027.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100254553 [Vitis vinifera];; (*ITAG) Solyc12g098880.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64597137-64597519 transcript_region:SL2.40ch12:64597137..64597519+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007847g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|209 NbS00035947g0002.1 protein AED:0.34 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|258; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-48) hypothetical protein [Nicotiana tabacum]; NbS00000823g0004.1 protein AED:0.11 eAED:0.15 QI:0|0.86|0.81|1|0.93|0.93|16|242|1123; (*GB) gi|225432997|ref|XP_002280814.1| (e_value=0.0) PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Vitis vinifera];; (*SWP) sp|Q9FIY7|SM3L3_ARATH (e_value=0.0) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1;; (*TAIR) AT5G43530.1 (e_value=0.0) | Symbols: | Helicase protein with RING/U-box domain | chr5:17489327-17494830 FORWARD LENGTH=1277;; (*ITAG) Solyc03g005460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:349801-357078 transcript_region:SL2.40ch03:349801..357078- go_terms:GO:0004842 functional_description:"DNA helicase (AHRD V1 **-- C4R4A1_PICPG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004842 NbS00001533g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|225446615|ref|XP_002280666.1| (e_value=6e-92) PREDICTED: uncharacterized protein LOC100266079 [Vitis vinifera];; (*TAIR) AT2G42610.2 (e_value=6e-82) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc10g008000.1.1 (e_value=6e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2170166-2170702 transcript_region:SL2.40ch10:2170166..2170702+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00001533g0008.1 protein AED:0.43 eAED:0.43 QI:0|0.45|0.41|0.5|0.54|0.75|12|0|237; (*GB) gi|77999279|gb|ABB16986.1| (e_value=3e-123) unknown [Solanum tuberosum];; (*SWP) sp|O23708|PSA2A_ARATH (e_value=7e-122) Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1;; (*TAIR) AT1G16470.2 (e_value=6e-123) | Symbols: PAB1 | proteasome subunit PAB1 | chr1:5623122-5625439 FORWARD LENGTH=235;; (*ITAG) Solyc10g008010.2.1 (e_value=2e-126) genomic_reference:SL2.40ch10 gene_region:2177130-2182889 transcript_region:SL2.40ch10:2177130..2182889+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38M52_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00001533g0106.1 protein AED:0.02 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|117 NbS00001533g0128.1 protein AED:0.24 eAED:0.24 QI:141|1|1|1|0.57|0.75|8|544|299 NbS00001533g0127.1 protein AED:0.27 eAED:0.27 QI:4|1|1|1|0.5|0.66|3|64|84 NbS00001533g0130.1 protein AED:0.26 eAED:0.31 QI:217|0.81|0.75|1|0.81|0.75|12|0|646 NbS00001533g0131.1 protein AED:0.46 eAED:0.66 QI:0|0|0|1|0|0|3|0|120 NbS00019211g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.5|1|0.33|0.25|4|118|1049; (*GB) gi|339790463|dbj|BAK52388.1| (e_value=0.0) leucine rich repeat receptor protein kinase CLAVATA1 [Solanum lycopersicum];; (*SWP) sp|O49545|BAME1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT5G65700.2 (e_value=0.0) | Symbols: BAM1 | Leucine-rich receptor-like protein kinase family protein | chr5:26281826-26284945 FORWARD LENGTH=1003;; (*ITAG) Solyc02g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47648877-47652967 transcript_region:SL2.40ch02:47648877..47652967+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00019211g0006.1 protein AED:0.09 eAED:0.09 QI:539|0.91|0.76|1|0.83|0.84|13|414|494; (*GB) gi|359480516|ref|XP_002265425.2| (e_value=4e-82) PREDICTED: uncharacterized protein LOC100241361 [Vitis vinifera];; (*TAIR) AT2G22720.3 (e_value=1e-26) | Symbols: | SPT2 chromatin protein | chr2:9658182-9660532 FORWARD LENGTH=569;; (*ITAG) Solyc03g043760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11279379-11283447 transcript_region:SL2.40ch03:11279379..11283447+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- Q53MP6_ORYSJ); contains Interpro domain(s) IPR013256 Chromatin SPT2 "; NbS00002953g0001.1 protein AED:0.28 eAED:0.29 QI:0|1|0.85|1|1|1|7|0|304; (*GB) gi|225453066|ref|XP_002269177.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha [Vitis vinifera];; (*SWP) sp|Q06190|P2R3A_HUMAN (e_value=3e-95) Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Homo sapiens GN=PPP2R3A PE=1 SV=1;; (*TAIR) AT1G54450.1 (e_value=0.0) | Symbols: | Calcium-binding EF-hand family protein | chr1:20336570-20339535 REVERSE LENGTH=535;; (*ITAG) Solyc05g054980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63906795-63915747 transcript_region:SL2.40ch05:63906795..63915747- go_terms:GO:0005509 functional_description:"Protein phosphatase 2A regulatory subunit B&apos-like protein (AHRD V1 ***- Q56WJ0_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00022618g0001.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|193; (*GB) gi|225440213|ref|XP_002283659.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100255095 [Vitis vinifera];; (*TAIR) AT3G56880.1 (e_value=3e-16) | Symbols: | VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245;; (*ITAG) Solyc10g077130.1.1 (e_value=2e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59327643-59328260 transcript_region:SL2.40ch10:59327643..59328260+ functional_description:"Atcambp25-binding protein OF (AHRD V1 ***- D7LGI4_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00030299g0004.1 protein AED:0.16 eAED:0.16 QI:309|0.91|0.84|1|0.75|0.61|13|335|636; (*GB) gi|297738089|emb|CBI27290.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LMX4|PPA1_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1;; (*TAIR) AT1G13750.1 (e_value=0.0) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4715490-4718091 REVERSE LENGTH=613;; (*ITAG) Solyc05g012260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5546798-5552510 transcript_region:SL2.40ch05:5546798..5552510- go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbC24086542g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|224106776|ref|XP_002314281.1| (e_value=6e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60700.1 (e_value=3e-31) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc06g075100.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:42989149-42992794 transcript_region:SL2.40ch06:42989149..42992794+ go_terms:GO:0016757 functional_description:"Glycosyl transferase family 2 protein (AHRD V1 **-* B5RHS8_MUSBA)"; GO:0016757 NbS00023903g0007.1 protein AED:0.02 eAED:0.02 QI:0|0.8|0.5|1|0.8|0.66|6|0|624; (*GB) gi|225456106|ref|XP_002281466.1| (e_value=0.0) PREDICTED: 66 kDa stress protein [Vitis vinifera];; (*SWP) sp|P90587|WD66_PHYPO (e_value=1e-161) 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1;; (*TAIR) AT3G18060.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609;; (*ITAG) Solyc03g119090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61843010-61849696 transcript_region:SL2.40ch03:61843010..61849696- go_terms:GO:0003779,GO:0000166 functional_description:"WD repeat-containing protein 1 (AHRD V1 ***- B5X1Z0_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0003779,GO:0000166 NbS00023903g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0.5|0.66|3|0|149; (*GB) gi|224133196|ref|XP_002321507.1| (e_value=3e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XFK7|MFT_ARATH (e_value=2e-67) Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1;; (*TAIR) AT1G18100.1 (e_value=2e-68) | Symbols: E12A11, MFT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:6228049-6230110 REVERSE LENGTH=173;; (*ITAG) Solyc03g119100.1.1 (e_value=3e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61852159-61853792 transcript_region:SL2.40ch03:61852159..61853792- go_terms:GO:0008429 functional_description:"Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT07_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; GO:0008429 NbS00041525g0007.1 protein AED:0.03 eAED:0.03 QI:136|1|1|1|1|1|3|127|430; (*GB) gi|224143803|ref|XP_002336081.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=1e-76) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT1G52770.1 (e_value=3e-175) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:19656009-19657546 FORWARD LENGTH=454;; (*ITAG) Solyc03g119960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62531674-62533441 transcript_region:SL2.40ch03:62531674..62533441- go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L4V2_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00041525g0006.1 protein AED:0.16 eAED:0.16 QI:239|1|1|1|1|1|5|352|631; (*GB) gi|6226239|sp|O24381.2|TLC1_SOLTU (e_value=0.0) RecName: Full=Plastidic ATP/ADP-transporter;; (*SWP) sp|O24381|TLC1_SOLTU (e_value=0.0) Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT1G80300.1 (e_value=0.0) | Symbols: NTT1, ATNTT1 | nucleotide transporter 1 | chr1:30191954-30194280 FORWARD LENGTH=624;; (*ITAG) Solyc03g119970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62535671-62539365 transcript_region:SL2.40ch03:62535671..62539365- go_terms:GO:0005515 functional_description:"ADP ATP carrier protein (AHRD V1 ***- Q3KMV6_CHLTA); contains Interpro domain(s) IPR004667 ADP/ATP carrier protein "; GO:0005515 NbS00008012g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|0.66|1|1|3|0|447; (*GB) gi|224132860|ref|XP_002327898.1| (e_value=5e-170) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=2e-136) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G03840.1 (e_value=2e-137) | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506;; (*ITAG) Solyc07g053570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59307855-59310428 transcript_region:SL2.40ch07:59307855..59310428- go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MN23_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00002812g0002.1 protein AED:0.14 eAED:0.14 QI:165|1|1|1|0.62|0.66|9|309|349; (*GB) gi|29826242|gb|AAO91861.1| (e_value=0.0) TGB12K interacting protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9SAR5|AKR2_ARATH (e_value=1e-146) Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2;; (*TAIR) AT2G17390.1 (e_value=3e-149) | Symbols: AKR2B | ankyrin repeat-containing 2B | chr2:7555870-7557743 FORWARD LENGTH=344;; (*ITAG) Solyc01g104170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84393496-84398307 transcript_region:SL2.40ch01:84393496..84398307- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 ***- B6TNC0_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00002812g0013.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.28|1|1|1|7|597|182; (*GB) gi|225445152|ref|XP_002284033.1| (e_value=2e-58) PREDICTED: 7SK snRNA methylphosphate capping enzyme [Vitis vinifera];; (*SWP) sp|Q7L2J0|MEPCE_HUMAN (e_value=2e-27) 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1;; (*TAIR) AT5G51130.1 (e_value=3e-59) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20781896-20783901 FORWARD LENGTH=318;; (*ITAG) Solyc05g050000.2.1 (e_value=3e-85) genomic_reference:SL2.40ch05 gene_region:58997556-59001737 transcript_region:SL2.40ch05:58997556..59001737- go_terms:GO:0004652 functional_description:"Bicoid-interacting 3 domain-containing protein (Fragment) (AHRD V1 *-*- C6F7A2_PSEMZ); contains Interpro domain(s) IPR010675 Bicoid-interacting 3 "; GO:0004652 NbS00002812g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|357512049|ref|XP_003626313.1| (e_value=1e-34) Elongation of fatty acids protein [Medicago truncatula];; (*TAIR) AT3G06470.1 (e_value=3e-35) | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278;; (*ITAG) Solyc07g018250.1.1 (e_value=8e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:9896474-9897304 transcript_region:SL2.40ch07:9896474..9897304+ go_terms:GO:0009922 functional_description:"Elongation of very long chain fatty acids protein AAEL008004 (AHRD V1 **** C1BRC3_9MAXI); contains Interpro domain(s) IPR002076 GNS1/SUR4 membrane protein "; GO:0009922 NbS00002812g0011.1 protein AED:0.23 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|192; (*GB) gi|224070493|ref|XP_002303158.1| (e_value=7e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q555E8|Y4669_DICDI (e_value=2e-16) Putative elongation of fatty acids protein DDB_G0274669 OS=Dictyostelium discoideum GN=DDB_G0274669 PE=3 SV=1;; (*TAIR) AT3G06470.1 (e_value=2e-44) | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278;; (*ITAG) Solyc10g046830.1.1 (e_value=4e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:32942286-32943083 transcript_region:SL2.40ch10:32942286..32943083+ go_terms:GO:0009922 functional_description:"Elongation of very long chain fatty acids protein 4 (AHRD V1 *-** B0W3U8_CULQU); contains Interpro domain(s) IPR002076 GNS1/SUR4 membrane protein "; GO:0009922 NbS00038338g0010.1 protein AED:0.06 eAED:0.06 QI:264|0.71|0.87|1|0.85|0.75|8|298|936; (*GB) gi|225444746|ref|XP_002278147.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244043 [Vitis vinifera];; (*SWP) sp|O74999|RAD7_SCHPO (e_value=1e-14) DNA repair protein rhp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp7 PE=2 SV=1;; (*TAIR) AT2G06040.1 (e_value=4e-170) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762;; (*ITAG) Solyc07g041760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51460855-51465488 transcript_region:SL2.40ch07:51460855..51465488+ functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00038338g0013.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.33|3|0|409; (*GB) gi|297738569|emb|CBI27814.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=5e-97) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=4e-98) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc04g076330.1.1 (e_value=2e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58837499-58839319 transcript_region:SL2.40ch04:58837499..58839319+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00038338g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225444744|ref|XP_002278128.1| (e_value=4e-13) PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Vitis vinifera];; (*ITAG) Solyc04g076330.1.1 (e_value=6e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58837499-58839319 transcript_region:SL2.40ch04:58837499..58839319+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00038338g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|185; (*GB) gi|297738568|emb|CBI27813.3| (e_value=4e-77) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G42725.1 (e_value=1e-42) | Symbols: | Putative membrane lipoprotein | chr3:14843082-14843690 REVERSE LENGTH=202;; (*ITAG) Solyc07g041770.1.1 (e_value=4e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51468490-51469116 transcript_region:SL2.40ch07:51468490..51469116- functional_description:"Unknown Protein (AHRD V1)"; NbS00038338g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.6|1|0.75|0.6|5|278|183; (*GB) gi|356547937|ref|XP_003542361.1| (e_value=4e-77) PREDICTED: uncharacterized protein LOC100798363 [Glycine max];; (*SWP) sp|P54928|IMP3_SOLLC (e_value=7e-14) Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1;; (*TAIR) AT2G06010.1 (e_value=4e-75) | Symbols: ORG4 | OBP3-responsive gene 4 | chr2:2336841-2338391 FORWARD LENGTH=188;; (*ITAG) Solyc07g041780.2.1 (e_value=3e-95) genomic_reference:SL2.40ch07 gene_region:51472575-51474556 transcript_region:SL2.40ch07:51472575..51474556- functional_description:"OBP3-responsive gene 4 (AHRD V1 **-- D7L9C5_ARALY)"; NbS00006465g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=1e-134) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT5G22070.1 (e_value=2e-121) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:7308255-7309343 FORWARD LENGTH=362;; (*ITAG) Solyc11g006470.1.1 (e_value=2e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1157226-1159480 transcript_region:SL2.40ch11:1157226..1159480+ go_terms:GO:0005840 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005840 NbS00019427g0002.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.25|0.75|0.66|0.5|4|0|278; (*GB) gi|34393752|dbj|BAC84952.1| (e_value=3e-67) PHCLF3 [Petunia x hybrida];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=1e-23) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=8e-25) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=2e-63) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00020973g0012.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|0.5|0.33|3|0|290; (*GB) gi|224065631|ref|XP_002301893.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|O64798|Y1747_ARATH (e_value=4e-28) Inactive serine/threonine-protein kinase At1g67470 OS=Arabidopsis thaliana GN=At1g67470 PE=2 SV=1;; (*TAIR) AT3G57700.1 (e_value=1e-39) | Symbols: | Protein kinase superfamily protein | chr3:21384917-21385939 FORWARD LENGTH=340;; (*ITAG) Solyc06g060690.2.1 (e_value=3e-79) genomic_reference:SL2.40ch06 gene_region:35101221-35102882 transcript_region:SL2.40ch06:35101221..35102882- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00020973g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.77|1|0.87|1|9|0|545; (*GB) gi|3676296|gb|AAD03392.1| (e_value=0.0) mitochondrial ATPase beta subunit [Nicotiana sylvestris];; (*SWP) sp|P17614|ATPBM_NICPL (e_value=0.0) ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1;; (*TAIR) AT5G08680.1 (e_value=0.0) | Symbols: | ATP synthase alpha/beta family protein | chr5:2821992-2824683 FORWARD LENGTH=559;; (*ITAG) Solyc05g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2805741-2809779 transcript_region:SL2.40ch05:2805741..2809779- go_terms:GO:0005507 functional_description:"ATP synthase subunit beta (AHRD V1 ***- O82722_NICSY); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0005507 NbS00020973g0008.1 protein AED:0.31 eAED:0.31 QI:128|1|1|1|1|1|5|474|307; (*GB) gi|225424144|ref|XP_002283966.1| (e_value=6e-144) PREDICTED: fruit protein pKIWI502 [Vitis vinifera];; (*SWP) sp|P43394|K502_ACTDE (e_value=4e-92) Fruit protein pKIWI502 OS=Actinidia deliciosa GN=pKIWI502 PE=2 SV=1;; (*TAIR) AT1G15140.1 (e_value=1e-135) | Symbols: | FAD/NAD(P)-binding oxidoreductase | chr1:5210403-5212137 REVERSE LENGTH=295;; (*ITAG) Solyc05g008450.2.1 (e_value=3e-168) genomic_reference:SL2.40ch05 gene_region:2800495-2805716 transcript_region:SL2.40ch05:2800495..2805716- go_terms:GO:0005507 functional_description:"Oxidoreductase FAD/NAD(P)-binding domain protein (AHRD V1 **-* B8JDQ6_ANAD2); contains Interpro domain(s) IPR001433 Oxidoreductase FAD/NAD(P)-binding "; GO:0005507 NbS00028362g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|0.5|2|0|159; (*GB) gi|256274567|gb|ACU68503.1| (e_value=6e-32) WOX3 protein [Petunia x hybrida];; (*SWP) sp|Q9SIB4|WOX3_ARATH (e_value=1e-27) WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2 SV=1;; (*TAIR) AT2G28610.1 (e_value=1e-28) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072770.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53058404-53060008 transcript_region:SL2.40ch11:53058404..53060008+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00025980g0008.1 protein AED:0.18 eAED:0.18 QI:0|1|0.9|1|1|1|10|348|308; (*GB) gi|225433688|ref|XP_002266909.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera];; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2;; (*TAIR) AT1G10840.1 (e_value=0.0) | Symbols: TIF3H1 | translation initiation factor 3 subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337;; (*ITAG) Solyc12g098680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64446795-64452106 transcript_region:SL2.40ch12:64446795..64452106+ functional_description:"Eukaryotic translation initiation factor 3 subunit 3 (AHRD V1 ***- B6SHE0_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00025980g0009.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|0|0.33|3|0|1035; (*GB) gi|225433686|ref|XP_002265846.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Vitis vinifera];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G28040.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr3:10435139-10438268 FORWARD LENGTH=1016;; (*ITAG) Solyc09g098290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67431841-67435522 transcript_region:SL2.40ch09:67431841..67435522- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00016346g0007.1 protein AED:0.15 eAED:0.17 QI:0|0.33|0.28|0.85|0.16|0.28|7|41|377; (*GB) gi|225450157|ref|XP_002279882.1| (e_value=4e-151) PREDICTED: E3 ubiquitin-protein ligase makorin-like [Vitis vinifera];; (*SWP) sp|E0X9N4|C3H69_ARATH (e_value=5e-133) Zinc finger CCCH domain-containing protein 69 OS=Arabidopsis thaliana GN=At3g63550 PE=3 SV=1;; (*TAIR) AT3G08505.1 (e_value=6e-99) | Symbols: | zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr3:2580603-2582043 REVERSE LENGTH=323;; (*ITAG) Solyc01g087030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73707290-73715081 transcript_region:SL2.40ch01:73707290..73715081- go_terms:GO:0005515,GO:0003682 functional_description:"Makorin RING finger protein (AHRD V1 ***- Q7X7W8_PEA); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005515,GO:0003682 NbS00016534g0008.1 protein AED:0.58 eAED:0.58 QI:0|0.66|0|1|1|1|4|0|154; (*GB) gi|297737264|emb|CBI26465.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g013880.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4667669-4679426 transcript_region:SL2.40ch12:4667669..4679426- go_terms:GO:0005664 functional_description:"Origin recognition complex subunit 3 (AHRD V1 ***- Q945C6_MAIZE); contains Interpro domain(s) IPR010748 Origin recognition complex subunit 3, N-terminal "; GO:0005664 NbS00016534g0006.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.85|1|1|7|0|639; (*GB) gi|356523290|ref|XP_003530273.1| (e_value=2e-166) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=8e-130) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=6e-131) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc07g018190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9675923-9679700 transcript_region:SL2.40ch07:9675923..9679700- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbC26188271g0001.1 protein AED:0.10 eAED:0.36 QI:0|0|0|1|0|0|2|0|175 NbS00017041g0011.1 protein AED:0.24 eAED:0.24 QI:333|1|1|1|1|1|4|288|111; (*GB) gi|357452077|ref|XP_003596315.1| (e_value=6e-63) Ubiquitin domain-containing protein [Medicago truncatula];; (*SWP) sp|Q4V8W7|UBTD1_DANRE (e_value=3e-28) Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1;; (*TAIR) AT1G53400.1 (e_value=6e-63) | Symbols: | Ubiquitin domain-containing protein | chr1:19925009-19926400 FORWARD LENGTH=114;; (*ITAG) Solyc03g006020.2.1 (e_value=3e-75) genomic_reference:SL2.40ch03 gene_region:687640-692338 transcript_region:SL2.40ch03:687640..692338- go_terms:GO:0005515 functional_description:"Ubiquitin domain containing 1 (AHRD V1 ***- B6T693_MAIZE)"; GO:0005515 NbS00017041g0015.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|113; (*GB) gi|327493267|gb|AEA86340.1| (e_value=3e-11) BES1/BZR1-like protein [Solanum nigrum];; (*ITAG) Solyc03g005990.2.1 (e_value=6e-15) genomic_reference:SL2.40ch03 gene_region:667344-672399 transcript_region:SL2.40ch03:667344..672399- go_terms:GO:0030528 functional_description:"BES1/BZR1 homolog protein 4 (AHRD V1 **-- BEH4_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00017041g0016.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|0.5|2|0|102; (*GB) gi|225443710|ref|XP_002267082.1| (e_value=1e-29) PREDICTED: BES1/BZR1 homolog protein 4 [Vitis vinifera];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=2e-22) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=2e-23) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc03g005990.2.1 (e_value=2e-50) genomic_reference:SL2.40ch03 gene_region:667344-672399 transcript_region:SL2.40ch03:667344..672399- go_terms:GO:0030528 functional_description:"BES1/BZR1 homolog protein 4 (AHRD V1 **-- BEH4_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00017041g0010.1 protein AED:0.00 eAED:0.00 QI:1203|1|1|1|1|1|2|214|405; (*GB) gi|5821138|dbj|BAA83711.1| (e_value=0.0) heat shock factor [Nicotiana tabacum];; (*SWP) sp|O49403|HFA4A_ARATH (e_value=2e-101) Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1;; (*TAIR) AT4G18880.1 (e_value=2e-102) | Symbols: AT-HSFA4A, HSF A4A | heat shock transcription factor A4A | chr4:10347769-10349051 REVERSE LENGTH=401;; (*ITAG) Solyc03g006000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:678142-679948 transcript_region:SL2.40ch03:678142..679948+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00017041g0012.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.5|1|0.66|0.5|4|174|491; (*GB) gi|255562524|ref|XP_002522268.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G17030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc03g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:683851-686834 transcript_region:SL2.40ch03:683851..686834+ functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00054109g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|57013940|ref|YP_173413.1| (e_value=1e-95) hypothetical protein NitaMp069 [Nicotiana tabacum]; NbS00011045g0004.1 protein AED:0.09 eAED:0.18 QI:0|0|0|0.8|0.25|0.2|5|0|303; (*ITAG) Solyc11g044900.1.1 (e_value=2e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36343055-36356066 transcript_region:SL2.40ch11:36343055..36356066+ functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 *--- TRF5_ASHGO)"; NbS00011045g0211.1 protein AED:0.28 eAED:0.28 QI:359|1|1|1|1|1|7|386|774 NbS00011045g0202.1 protein AED:0.19 eAED:0.19 QI:219|0.73|0.79|0.95|0.95|0.91|24|0|1378 NbS00011045g0212.1 protein AED:0.29 eAED:0.29 QI:0|0.37|0.33|0.77|0.37|0.33|9|0|568 NbS00010863g0005.1 protein AED:0.38 eAED:0.39 QI:256|0.8|0.83|1|0|0|6|0|125; (*GB) gi|356558389|ref|XP_003547489.1| (e_value=3e-59) PREDICTED: uncharacterized protein LOC100814053 [Glycine max];; (*TAIR) AT4G26060.1 (e_value=7e-52) | Symbols: | Ribosomal protein L18ae family | chr4:13214972-13215955 REVERSE LENGTH=133;; (*ITAG) Solyc07g041010.2.1 (e_value=8e-76) genomic_reference:SL2.40ch07 gene_region:48851789-48854684 transcript_region:SL2.40ch07:48851789..48854684+ functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 ***- Q9LTR7_ARATH)"; NbS00010863g0006.1 protein AED:0.10 eAED:0.10 QI:186|0.83|0.85|1|0.83|0.71|7|277|321; (*GB) gi|225444834|ref|XP_002280767.1| (e_value=2e-97) PREDICTED: uncharacterized protein LOC100252615 [Vitis vinifera];; (*TAIR) AT2G19385.1 (e_value=3e-78) | Symbols: | zinc ion binding | chr2:8387149-8388581 FORWARD LENGTH=275;; (*ITAG) Solyc07g041020.2.1 (e_value=5e-145) genomic_reference:SL2.40ch07 gene_region:48856332-48860674 transcript_region:SL2.40ch07:48856332..48860674- go_terms:GO:0008270 functional_description:"Cell growth-regulating nucleolar protein (AHRD V1 *--- C1BWD8_ESOLU); contains Interpro domain(s) IPR014898 Zinc finger, C2H2, LYAR-type "; GO:0008270 NbS00018199g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|0.5|1|0.5|4|0|171; (*GB) gi|224096596|ref|XP_002310665.1| (e_value=6e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19740.1 (e_value=9e-57) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993;; (*ITAG) Solyc02g014350.2.1 (e_value=4e-79) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00057566g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.66|1|1|1|9|0|1177; (*GB) gi|359477035|ref|XP_002265701.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265343 [Vitis vinifera];; (*SWP) sp|Q5ZI89|TPC11_CHICK (e_value=2e-23) Trafficking protein particle complex subunit 11 OS=Gallus gallus GN=TRAPPC11 PE=2 SV=1;; (*TAIR) AT5G65950.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190;; (*ITAG) Solyc02g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40562681-40571418 transcript_region:SL2.40ch02:40562681..40571418+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY7_ARATH); contains Interpro domain(s) IPR012880 Protein of unknown function DUF1683, C-terminal "; NbS00023597g0004.1 protein AED:0.16 eAED:0.17 QI:7|0.5|0|1|0.5|0.33|3|0|764; (*GB) gi|147804659|emb|CAN73342.1| (e_value=0.0) hypothetical protein VITISV_042406 [Vitis vinifera];; (*SWP) sp|P49961|ENTP1_HUMAN (e_value=2e-34) Ectonucleoside triphosphate diphosphohydrolase 1 OS=Homo sapiens GN=ENTPD1 PE=1 SV=1;; (*TAIR) AT4G19180.1 (e_value=0.0) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr4:10485518-10487868 REVERSE LENGTH=740;; (*ITAG) Solyc05g052490.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61845448-61849046 transcript_region:SL2.40ch05:61845448..61849046- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 *--- Q6DC46_DANRE); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00040367g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|350537499|ref|NP_001234040.1| (e_value=3e-55) steroid 5 alpha reductase DET2 [Solanum lycopersicum];; (*SWP) sp|Q38944|DET2_ARATH (e_value=7e-38) Probable steroid reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=2 SV=2;; (*TAIR) AT2G38050.1 (e_value=5e-39) | Symbols: DET2, DWF6, ATDET2 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:15921303-15922176 REVERSE LENGTH=262;; (*ITAG) Solyc10g086500.1.1 (e_value=6e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64629234-64630007 transcript_region:SL2.40ch10:64629234..64630007+ go_terms:GO:0016020,GO:0016021 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein expressed (AHRD V1 ***- Q53NE6_ORYSJ); contains Interpro domain(s) IPR016636 3-oxo-5-alpha-steroid 4-dehydrogenase IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0016020,GO:0016021 NbS00059953g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=7e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=7e-31) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=6e-32) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc03g025520.2.1 (e_value=3e-39) genomic_reference:SL2.40ch03 gene_region:7288938-7290880 transcript_region:SL2.40ch03:7288938..7290880+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735,GO:0003723 NbS00045828g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|225463934|ref|XP_002266212.1| (e_value=0.0) PREDICTED: DELLA protein RGL2 [Vitis vinifera];; (*SWP) sp|Q9S7H5|SCL21_ARATH (e_value=3e-53) Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1;; (*TAIR) AT2G04890.1 (e_value=2e-54) | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720575-1721816 REVERSE LENGTH=413;; (*ITAG) Solyc11g017100.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7898735-7900165 transcript_region:SL2.40ch11:7898735..7900165- functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbC23512151g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|0|1|0|78; (*GB) gi|380294407|gb|AFD50698.1| (e_value=2e-50) actin, partial [Plectranthus hilliardiae x Plectranthus saccatus];; (*SWP) sp|P93371|ACT5_TOBAC (e_value=1e-48) Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=3e-48) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=3e-49) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbC25874502g0003.1 protein AED:0.44 eAED:0.74 QI:16|0|0.5|1|1|1|2|0|62 NbS00012986g0002.1 protein AED:0.73 eAED:0.76 QI:0|0|0|0.42|1|0.71|7|0|147 NbS00012986g0001.1 protein AED:0.25 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|171 NbS00038868g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|66; (*ITAG) Solyc07g054810.1.1 (e_value=6e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60316175-60316363 transcript_region:SL2.40ch07:60316175..60316363+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027007g0006.1 protein AED:0.38 eAED:0.38 QI:251|1|0.66|1|1|1|3|0|446; (*GB) gi|325516246|gb|ADZ24701.1| (e_value=0.0) 4-hydroxyphenylpyruvate dioxygenase 2 [Solanum pennellii];; (*SWP) sp|O23920|HPPD_DAUCA (e_value=0.0) 4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G06570.1 (e_value=0.0) | Symbols: PDS1, HPD | phytoene desaturation 1 | chr1:2012015-2013543 REVERSE LENGTH=473;; (*ITAG) Solyc05g041200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:49398356-49402874 transcript_region:SL2.40ch05:49398356..49402874- go_terms:GO:0003868,GO:0016763 functional_description:"4-hydroxyphenylpyruvate dioxygenase (AHRD V1 **** B7X935_HEVBR); contains Interpro domain(s) IPR005956 4-hydroxyphenylpyruvate dioxygenase "; GO:0003868,GO:0016763 NbC26129345g0003.1 protein AED:0.20 eAED:0.20 QI:215|1|0.66|1|0|0.33|3|65|14 NbS00028172g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|551; (*GB) gi|225456926|ref|XP_002278116.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Vitis vinifera];; (*SWP) sp|Q9C7V5|PP104_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1;; (*TAIR) AT1G64310.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=552;; (*ITAG) Solyc03g112420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56874284-56875951 transcript_region:SL2.40ch03:56874284..56875951+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KSS5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00028172g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|224121738|ref|XP_002318660.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FML4|LOB_ARATH (e_value=3e-69) Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1;; (*TAIR) AT5G63090.4 (e_value=3e-70) | Symbols: LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH=186;; (*ITAG) Solyc03g112430.1.1 (e_value=2e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56889858-56890448 transcript_region:SL2.40ch03:56889858..56890448- functional_description:"LOB domain protein 1 (AHRD V1 ***- B2KKZ3_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00006196g0005.1 protein AED:0.22 eAED:0.22 QI:60|1|1|1|1|1|2|275|84; (*ITAG) Solyc06g061230.2.1 (e_value=2e-38) genomic_reference:SL2.40ch06 gene_region:35620304-35620987 transcript_region:SL2.40ch06:35620304..35620987+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009632 Putative metallocarboxypeptidase inhibitor "; NbS00006196g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|250; (*GB) gi|225427207|ref|XP_002278180.1| (e_value=3e-51) PREDICTED: uncharacterized protein LOC100248947 [Vitis vinifera];; (*TAIR) AT2G35230.1 (e_value=1e-31) | Symbols: IKU1 | VQ motif-containing protein | chr2:14842871-14844079 FORWARD LENGTH=402;; (*ITAG) Solyc06g061190.1.1 (e_value=8e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35583227-35584333 transcript_region:SL2.40ch06:35583227..35584333- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7KHM1_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00019373g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.55|0.5|1|0.88|0.8|10|957|1092; (*GB) gi|356560284|ref|XP_003548423.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800527 [Glycine max];; (*TAIR) AT3G61690.1 (e_value=0.0) | Symbols: | nucleotidyltransferases | chr3:22828349-22833477 FORWARD LENGTH=1303;; (*ITAG) Solyc01g095730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78684669-78697111 transcript_region:SL2.40ch01:78684669..78697111+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00019373g0002.1 protein AED:0.24 eAED:0.48 QI:614|0|0.5|1|0|0.5|2|0|93 NbS00023802g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.25|0.2|0.4|1|1|5|249|108; (*GB) gi|357495421|ref|XP_003617999.1| (e_value=4e-13) Periodic tryptophan protein-like protein [Medicago truncatula];; (*ITAG) Solyc04g005330.2.1 (e_value=4e-26) genomic_reference:SL2.40ch04 gene_region:241155-247975 transcript_region:SL2.40ch04:241155..247975- go_terms:GO:0005515 functional_description:"Periodic tryptophan protein 1 homolog (AHRD V1 **-- C1BVG9_9MAXI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00023802g0004.1 protein AED:0.54 eAED:0.54 QI:0|1|0|1|1|0.5|2|0|100; (*GB) gi|224068133|ref|XP_002302670.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT4G00820.1 (e_value=2e-15) | Symbols: iqd17 | IQ-domain 17 | chr4:349300-351307 FORWARD LENGTH=534;; (*ITAG) Solyc08g083240.2.1 (e_value=8e-35) genomic_reference:SL2.40ch08 gene_region:62923263-62925544 transcript_region:SL2.40ch08:62923263..62925544- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00035287g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.8|1|1|0.8|5|386|335; (*GB) gi|224135845|ref|XP_002327318.1| (e_value=2e-11) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g053320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59112881-59116171 transcript_region:SL2.40ch07:59112881..59116171+ functional_description:"Fiber protein Fb32 (AHRD V1 *-*- Q6UA04_GOSBA)"; NbS00035287g0010.1 protein AED:0.06 eAED:0.07 QI:0|0.66|0.5|1|0.66|0.5|4|0|401; (*GB) gi|224146480|ref|XP_002326021.1| (e_value=9e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55990.1 (e_value=2e-85) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc07g053330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59117025-59118922 transcript_region:SL2.40ch07:59117025..59118922- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00004133g0005.1 protein AED:0.03 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.33|3|10|372; (*GB) gi|359482026|ref|XP_002275955.2| (e_value=1e-77) PREDICTED: B3 domain-containing protein At2g36080-like [Vitis vinifera];; (*SWP) sp|Q9FNI3|Y5625_ARATH (e_value=5e-60) B3 domain-containing protein At5g06250 OS=Arabidopsis thaliana GN=At5g06250 PE=2 SV=1;; (*TAIR) AT5G06250.2 (e_value=4e-61) | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:1892714-1894058 REVERSE LENGTH=282;; (*ITAG) Solyc09g010230.1.1 (e_value=1e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3624972-3628689 transcript_region:SL2.40ch09:3624972..3628689+ go_terms:GO:0003700 functional_description:"Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00023712g0004.1 protein AED:0.11 eAED:0.16 QI:0|0|0|0.66|0.5|0.33|3|0|620; (*GB) gi|225457590|ref|XP_002273276.1| (e_value=0.0) PREDICTED: F-box/kelch-repeat protein At5g42350-like [Vitis vinifera];; (*SWP) sp|Q9FII2|FK117_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1;; (*TAIR) AT5G42350.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:16932106-16933797 FORWARD LENGTH=563;; (*ITAG) Solyc04g082580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63811989-63815217 transcript_region:SL2.40ch04:63811989..63815217- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTF5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00051747g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|251; (*GB) gi|15234272|ref|NP_194508.1| (e_value=8e-62) Calcium-binding EF hand family protein [Arabidopsis thaliana];; (*TAIR) AT4G27790.1 (e_value=2e-64) | Symbols: | Calcium-binding EF hand family protein | chr4:13850066-13851488 FORWARD LENGTH=345;; (*ITAG) Solyc06g052040.2.1 (e_value=1e-77) genomic_reference:SL2.40ch06 gene_region:32195087-32196001 transcript_region:SL2.40ch06:32195087..32196001- functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7MDR7_ARALY)"; NbS00040253g0004.1 protein AED:0.28 eAED:0.28 QI:63|0.91|1|1|0.75|0.84|13|354|385; (*GB) gi|225454328|ref|XP_002277525.1| (e_value=0.0) PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera];; (*SWP) sp|Q8RX88|FACE1_ARATH (e_value=0.0) CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1;; (*TAIR) AT4G01320.1 (e_value=0.0) | Symbols: ATSTE24, STE24 | Peptidase family M48 family protein | chr4:545905-549002 FORWARD LENGTH=424;; (*ITAG) Solyc01g094930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78090601-78100660 transcript_region:SL2.40ch01:78090601..78100660+ go_terms:GO:0016020 functional_description:"CAAX prenyl protease 1 (AHRD V1 ***- B4FBL0_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00032073g0009.1 protein AED:0.34 eAED:0.34 QI:30|1|1|1|1|1|8|272|233; (*GB) gi|224072751|ref|XP_002303863.1| (e_value=2e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|O09101|PIGF_MOUSE (e_value=5e-19) Phosphatidylinositol-glycan biosynthesis class F protein OS=Mus musculus GN=Pigf PE=1 SV=1;; (*TAIR) AT1G16040.1 (e_value=1e-67) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:5504747-5506456 FORWARD LENGTH=226;; (*ITAG) Solyc03g117650.2.1 (e_value=5e-120) genomic_reference:SL2.40ch03 gene_region:60787314-60791258 transcript_region:SL2.40ch03:60787314..60791258+ go_terms:GO:0016021 functional_description:"Glycosylphosphatidylinositol anchor biosynthesis protein 11 (AHRD V1 ***- B4FCF2_MAIZE); contains Interpro domain(s) IPR009580 GPI biosynthesis protein Pig-F "; GO:0016021 NbS00032073g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|393; (*GB) gi|224072745|ref|XP_002303860.1| (e_value=2e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|O22040|ANP1_ARATH (e_value=2e-37) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT4G36950.1 (e_value=7e-80) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc03g117640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60782770-60783987 transcript_region:SL2.40ch03:60782770..60783987- go_terms:GO:0042802 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_DANRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042802 NbS00032073g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|19878|emb|CAA44820.1| (e_value=0.0) heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|P26413|HSP70_SOYBN (e_value=0.0) Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1;; (*TAIR) AT1G16030.1 (e_value=0.0) | Symbols: Hsp70b | heat shock protein 70B | chr1:5502386-5504326 REVERSE LENGTH=646;; (*ITAG) Solyc03g117630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60777610-60779574 transcript_region:SL2.40ch03:60777610..60779574- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00032073g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|128; (*ITAG) Solyc03g117620.2.1 (e_value=1e-41) genomic_reference:SL2.40ch03 gene_region:60775354-60776507 transcript_region:SL2.40ch03:60775354..60776507- go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 *-*- Q801X9_CARAU); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00032073g0011.1 protein AED:0.49 eAED:0.63 QI:0|0|0|0.66|0|0|3|0|139; (*GB) gi|19878|emb|CAA44820.1| (e_value=6e-26) heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|Q9S9N1|HSP7E_ARATH (e_value=3e-22) Heat shock 70 kDa protein 5 OS=Arabidopsis thaliana GN=HSP70-5 PE=2 SV=1;; (*TAIR) AT1G16030.1 (e_value=2e-23) | Symbols: Hsp70b | heat shock protein 70B | chr1:5502386-5504326 REVERSE LENGTH=646;; (*ITAG) Solyc03g117630.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60777610-60779574 transcript_region:SL2.40ch03:60777610..60779574- go_terms:GO:0051082,GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082,GO:0005524 NbS00041405g0013.1 protein AED:0.10 eAED:0.14 QI:0|1|0.33|1|0|0|3|31|78 NbS00041405g0012.1 protein AED:0.19 eAED:0.19 QI:163|1|1|1|1|1|10|430|310; (*GB) gi|77745499|gb|ABB02648.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|O24412|PSD7_ARATH (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1;; (*TAIR) AT5G05780.1 (e_value=0.0) | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit 8A | chr5:1735862-1738176 FORWARD LENGTH=308;; (*ITAG) Solyc01g008370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2477506-2483463 transcript_region:SL2.40ch01:2477506..2483463- go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J8V5_CHLRE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515,GO:0004175 NbS00041405g0017.1 protein AED:0.38 eAED:0.51 QI:188|0|0.5|1|1|1|2|0|65 NbS00041405g0019.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|1|0.66|0.5|4|0|228; (*GB) gi|350539303|ref|NP_001234386.1| (e_value=1e-101) L19 ribosomal protein-like [Solanum lycopersicum];; (*SWP) sp|P82413|RK19_SPIOL (e_value=6e-23) 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2;; (*TAIR) AT4G11630.1 (e_value=4e-52) | Symbols: | Ribosomal protein L19 family protein | chr4:7019793-7021068 FORWARD LENGTH=225;; (*ITAG) Solyc01g008340.2.1 (e_value=2e-104) genomic_reference:SL2.40ch01 gene_region:2463094-2470694 transcript_region:SL2.40ch01:2463094..2470694+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L19 (AHRD V1 *-*- B6T8M1_MAIZE); contains Interpro domain(s) IPR001857 Ribosomal protein L19 "; GO:0005840 NbS00041405g0014.1 protein AED:0.21 eAED:0.21 QI:51|1|1|1|1|1|2|338|124; (*GB) gi|356554173|ref|XP_003545423.1| (e_value=5e-66) PREDICTED: pre-mRNA branch site p14-like protein-like [Glycine max];; (*SWP) sp|Q9FMP4|PM14_ARATH (e_value=2e-61) Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1;; (*TAIR) AT5G12190.1 (e_value=1e-62) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3940731-3941105 REVERSE LENGTH=124;; (*ITAG) Solyc01g008360.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:2474504-2476439 transcript_region:SL2.40ch01:2474504..2476439+ go_terms:GO:0005515 functional_description:"Pre-mRNA branch site p14-like protein (AHRD V1 **-- B6T0W0_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00047956g0004.1 protein AED:0.49 eAED:0.51 QI:0|0.5|0|0.66|1|0.66|3|0|142; (*GB) gi|225460024|ref|XP_002271789.1| (e_value=1e-64) PREDICTED: 33 kDa ribonucleoprotein, chloroplastic [Vitis vinifera];; (*SWP) sp|Q09442|SF3B4_CAEEL (e_value=2e-16) Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2;; (*TAIR) AT4G10110.1 (e_value=2e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:6309606-6310809 REVERSE LENGTH=173;; (*ITAG) Solyc11g039950.1.1 (e_value=2e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:27843122-27851091 transcript_region:SL2.40ch11:27843122..27851091+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor 3B subunit 4 (AHRD V1 *--- Q22R82_TETTH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00061731g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|351724057|ref|NP_001238068.1| (e_value=6e-55) uncharacterized protein LOC100305876 [Glycine max];; (*SWP) sp|Q9LYC6|GRC11_ARATH (e_value=8e-51) Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1;; (*TAIR) AT3G62950.1 (e_value=6e-52) | Symbols: | Thioredoxin superfamily protein | chr3:23266303-23266614 FORWARD LENGTH=103;; (*ITAG) Solyc06g008750.1.1 (e_value=7e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2669060-2669368 transcript_region:SL2.40ch06:2669060..2669368+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9I9W1_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00051321g0002.1 protein AED:0.01 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|238; (*GB) gi|225444740|ref|XP_002278959.1| (e_value=1e-96) PREDICTED: uncharacterized protein LOC100256155 [Vitis vinifera];; (*TAIR) AT3G42725.1 (e_value=4e-47) | Symbols: | Putative membrane lipoprotein | chr3:14843082-14843690 REVERSE LENGTH=202;; (*ITAG) Solyc07g041770.1.1 (e_value=1e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:51468490-51469116 transcript_region:SL2.40ch07:51468490..51469116- functional_description:"Unknown Protein (AHRD V1)"; NbS00051321g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|0.66|0.5|0.33|3|0|325; (*GB) gi|297738827|emb|CBI28072.3| (e_value=7e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19650.1 (e_value=7e-17) | Symbols: ATOFP8, OFP8 | ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221;; (*ITAG) Solyc08g068170.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54495235-54496749 transcript_region:SL2.40ch08:54495235..54496749- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SHS0_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00007118g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.94|0.89|19|309|843; (*GB) gi|45479746|gb|AAS66760.1| (e_value=0.0) PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris];; (*SWP) sp|Q6AST1|HOX32_ORYSJ (e_value=0.0) Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1;; (*TAIR) AT2G34710.1 (e_value=0.0) | Symbols: PHB, ATHB14, ATHB-14, PHB-1D | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr2:14639548-14643993 REVERSE LENGTH=852;; (*ITAG) Solyc02g024070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15627267-15633567 transcript_region:SL2.40ch02:15627267..15633567+ go_terms:GO:0005515,GO:0003677 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0005515,GO:0003677 NbS00007411g0004.1 protein AED:0.51 eAED:0.85 QI:0|0|0|1|1|1|2|0|101 NbC23562928g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|68; (*ITAG) Solyc01g073980.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00057057g0009.1 protein AED:0.14 eAED:0.15 QI:0|1|0.66|1|1|1|3|369|549; (*GB) gi|225441959|ref|XP_002264087.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254979 isoform 1 [Vitis vinifera];; (*TAIR) AT5G50420.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:20530453-20532635 REVERSE LENGTH=566;; (*ITAG) Solyc06g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36260867-36264210 transcript_region:SL2.40ch06:36260867..36264210+ functional_description:"Protein-O-fucosyltransferase-like protein (AHRD V1 ***- D8RI05_SELML); contains Interpro domain(s) IPR019378 GDP-fucose protein O-fucosyltransferase "; NbS00057057g0008.1 protein AED:0.21 eAED:0.21 QI:57|1|1|1|0.83|0.71|7|106|592; (*GB) gi|359482584|ref|XP_002270971.2| (e_value=2e-164) PREDICTED: uncharacterized protein LOC100241217 [Vitis vinifera];; (*TAIR) AT1G53800.1 (e_value=3e-132) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink). | chr1:20081888-20084320 FORWARD LENGTH=568;; (*ITAG) Solyc03g123700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64510534-64516747 transcript_region:SL2.40ch03:64510534..64516747+ go_terms:GO:0004519 functional_description:"NUMOD3 motif family protein expressed (AHRD V1 *--- Q109Y3_ORYSJ); contains Interpro domain(s) IPR003611 Intron-encoded nuclease 2 "; GO:0004519 NbS00057057g0013.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.36|0.72|1|1|11|0|398; (*GB) gi|224137776|ref|XP_002326437.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=0.0) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=0.0) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00057057g0002.1 protein AED:0.49 eAED:0.49 QI:0|1|0.5|1|1|1|2|0|89; (*ITAG) Solyc03g123710.2.1 (e_value=1e-35) genomic_reference:SL2.40ch03 gene_region:64516714-64517267 transcript_region:SL2.40ch03:64516714..64517267- functional_description:"Unknown Protein (AHRD V1)"; NbS00015517g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|268; (*GB) gi|171190270|gb|ACB42441.1| (e_value=2e-155) aquaporin PIP2;4 [Gossypium hirsutum];; (*SWP) sp|P93004|PIP27_ARATH (e_value=7e-155) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=5e-156) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc02g083510.2.1 (e_value=3e-160) genomic_reference:SL2.40ch02 gene_region:41456730-41458872 transcript_region:SL2.40ch02:41456730..41458872- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q9FUC0_BRAOL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00015517g0005.1 protein AED:0.26 eAED:0.26 QI:195|0.14|0.37|0.87|1|1|8|0|330; (*GB) gi|255580629|ref|XP_002531137.1| (e_value=2e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G66090.1 (e_value=8e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26425831-26426955 FORWARD LENGTH=210;; (*ITAG) Solyc02g083500.2.1 (e_value=5e-26) genomic_reference:SL2.40ch02 gene_region:41453013-41456494 transcript_region:SL2.40ch02:41453013..41456494+ go_terms:GO:0006950 functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 ***- Q9FKX3_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00015517g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|63; (*GB) gi|356539846|ref|XP_003538404.1| (e_value=3e-30) PREDICTED: uncharacterized protein LOC100810219 [Glycine max];; (*TAIR) AT3G03341.1 (e_value=1e-31) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:790338-790556 REVERSE LENGTH=72;; (*ITAG) Solyc02g091390.2.1 (e_value=3e-34) genomic_reference:SL2.40ch02 gene_region:47265725-47266148 transcript_region:SL2.40ch02:47265725..47266148- functional_description:"Little protein 1 (AHRD V1 ***- B4UWC1_ARAHY)"; NbS00015517g0012.1 protein AED:0.27 eAED:0.32 QI:0|0.25|0.2|1|0.25|0.2|5|0|196; (*GB) gi|118487601|gb|ABK95626.1| (e_value=2e-67) unknown [Populus trichocarpa];; (*SWP) sp|Q43872|PER64_ARATH (e_value=1e-51) Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1;; (*TAIR) AT5G42180.1 (e_value=9e-53) | Symbols: | Peroxidase superfamily protein | chr5:16852702-16854021 FORWARD LENGTH=317;; (*ITAG) Solyc02g083490.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:41449952-41451309 transcript_region:SL2.40ch02:41449952..41451309+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** A9PGX3_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00039914g0004.1 protein AED:0.30 eAED:0.31 QI:0|1|0.75|1|1|0.75|4|0|300; (*GB) gi|359490076|ref|XP_002264669.2| (e_value=0.0) PREDICTED: WD repeat-containing protein WRAP73 [Vitis vinifera];; (*SWP) sp|Q9P2S5|WRP73_HUMAN (e_value=5e-109) WD repeat-containing protein WRAP73 OS=Homo sapiens GN=WRAP73 PE=2 SV=1;; (*TAIR) AT5G07590.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:2401712-2403731 REVERSE LENGTH=458;; (*ITAG) Solyc03g093490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48279419-48282209 transcript_region:SL2.40ch03:48279419..48282209+ go_terms:GO:0005515 functional_description:"WD-repeat protein (AHRD V1 ***- Q6V5I1_SISIR); contains Interpro domain(s) IPR011044 Quinoprotein amine dehydrogenase, beta chain-like "; GO:0005515 NbS00016303g0012.1 protein AED:0.17 eAED:0.17 QI:321|1|1|1|0.83|0.71|7|891|428; (*GB) gi|224062095|ref|XP_002300752.1| (e_value=3e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKE6|CCT15_ARATH (e_value=2e-112) Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2;; (*TAIR) AT5G45190.1 (e_value=1e-113) | Symbols: | Cyclin family protein | chr5:18277808-18280733 REVERSE LENGTH=579;; (*ITAG) Solyc07g032480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:39099382-39103804 transcript_region:SL2.40ch07:39099382..39103804- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin family protein (AHRD V1 *-** D7MKU7_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515,GO:0016538 NbS00016303g0009.1 protein AED:0.17 eAED:0.18 QI:173|0.86|0.81|1|0.53|0.5|16|247|529; (*GB) gi|1840114|gb|AAC49942.1| (e_value=0.0) ADP-glucose pyrophosphorylase large subunit [Solanum lycopersicum];; (*SWP) sp|P55242|GLGL2_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1;; (*TAIR) AT1G27680.1 (e_value=0.0) | Symbols: APL2 | ADPGLC-PPase large subunit | chr1:9631630-9634450 FORWARD LENGTH=518;; (*ITAG) Solyc07g019440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:11193230-11198353 transcript_region:SL2.40ch07:11193230..11198353- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** P93223_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00016303g0007.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|718; (*GB) gi|359489475|ref|XP_002267721.2| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis vinifera];; (*SWP) sp|Q8L838|COG4_ARATH (e_value=0.0) Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1;; (*TAIR) AT4G01400.2 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr4:573098-575648 REVERSE LENGTH=738;; (*ITAG) Solyc07g056010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61233825-61238820 transcript_region:SL2.40ch07:61233825..61238820- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 4 (AHRD V1 ***- COG4_ARATH); contains Interpro domain(s) IPR013167 COG4 transport "; GO:0005515 NbS00016303g0003.1 protein AED:0.16 eAED:0.16 QI:296|0.87|0.77|1|0.62|0.44|9|424|434; (*GB) gi|359492691|ref|XP_002281534.2| (e_value=2e-157) PREDICTED: inositol-pentakisphosphate 2-kinase-like [Vitis vinifera];; (*SWP) sp|Q93YN9|IPPK_ARATH (e_value=1e-128) Inositol-pentakisphosphate 2-kinase OS=Arabidopsis thaliana GN=IPK1 PE=1 SV=1;; (*TAIR) AT5G42810.1 (e_value=1e-129) | Symbols: ATIPK1, IPK1 | inositol-pentakisphosphate 2-kinase 1 | chr5:17167073-17169337 FORWARD LENGTH=451;; (*ITAG) Solyc04g080670.2.1 (e_value=2e-156) genomic_reference:SL2.40ch04 gene_region:62374139-62376875 transcript_region:SL2.40ch04:62374139..62376875+ go_terms:GO:0035299 functional_description:"Inositol pentakisphosphate 2-kinase (AHRD V1 **** A7X641_SOYBN); contains Interpro domain(s) IPR018009 Inositol-pentakisphosphate 2-kinase, metazoa "; GO:0035299 NbS00002783g0003.1 protein AED:0.07 eAED:0.07 QI:145|1|0.8|1|1|1|5|0|375; (*GB) gi|297742940|emb|CBI35807.3| (e_value=8e-143) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SSA7|GLIP5_ARATH (e_value=1e-132) GDSL esterase/lipase 5 OS=Arabidopsis thaliana GN=GLIP5 PE=2 SV=2;; (*TAIR) AT1G53920.1 (e_value=9e-134) | Symbols: GLIP5 | GDSL-motif lipase 5 | chr1:20137725-20139637 FORWARD LENGTH=385;; (*ITAG) Solyc12g049550.1.1 (e_value=1e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46635474-46642016 transcript_region:SL2.40ch12:46635474..46642016- go_terms:GO:0016298 functional_description:"GDSL esterase/lipase 5 (AHRD V1 **** GLIP5_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298 NbS00017173g0006.1 protein AED:0.02 eAED:0.02 QI:288|1|1|1|0.83|0.71|7|336|592; (*GB) gi|224089756|ref|XP_002308808.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55600.3 (e_value=3e-149) | Symbols: | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr5:22522232-22524796 REVERSE LENGTH=663;; (*ITAG) Solyc07g065370.2.1 (e_value=4e-158) genomic_reference:SL2.40ch07 gene_region:64381656-64386573 transcript_region:SL2.40ch07:64381656..64386573- go_terms:GO:0003677,GO:0003723 functional_description:"Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *--- Q69J33_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003677,GO:0003723 NbS00027157g0003.1 protein AED:0.21 eAED:0.30 QI:0|1|0.5|1|1|1|2|114|300; (*GB) gi|4206787|gb|AAD11808.1| (e_value=0.0) syntaxin-related protein Nt-syr1 [Nicotiana tabacum];; (*SWP) sp|Q9ZSD4|SY121_ARATH (e_value=9e-143) Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1;; (*TAIR) AT3G11820.2 (e_value=2e-144) | Symbols: SYP121, AT-SYR1, ATSYP121, SYR1, ATSYR1, PEN1 | syntaxin of plants 121 | chr3:3729540-3730775 REVERSE LENGTH=315;; (*ITAG) Solyc01g006950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1516340-1518150 transcript_region:SL2.40ch01:1516340..1518150- go_terms:GO:0043495 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0043495 NbS00008460g0004.1 protein AED:0.22 eAED:0.22 QI:297|0.85|0.8|1|0.85|0.8|15|0|684; (*GB) gi|49523567|emb|CAF18245.1| (e_value=0.0) STYLOSA protein [Antirrhinum majus];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=0.0) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT4G32551.1 (e_value=0.0) | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931;; (*ITAG) Solyc06g065640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37426162-37437607 transcript_region:SL2.40ch06:37426162..37437607+ go_terms:GO:0046982,GO:0016564 functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046982,GO:0016564 NbS00039259g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|0|0|2|0|244; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=4e-21) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006170.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00044308g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|171854647|dbj|BAG16513.1| (e_value=0.0) flavonoid glucoyltransferase UGT73E2 [Antirrhinum majus];; (*SWP) sp|Q9ZQ99|U73C1_ARATH (e_value=0.0) UDP-glycosyltransferase 73C1 OS=Arabidopsis thaliana GN=UGT73C1 PE=2 SV=1;; (*TAIR) AT2G36750.1 (e_value=0.0) | Symbols: UGT73C1 | UDP-glucosyl transferase 73C1 | chr2:15410531-15412006 REVERSE LENGTH=491;; (*ITAG) Solyc10g085870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64238811-64240271 transcript_region:SL2.40ch10:64238811..64240271+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00003105g0015.1 protein AED:0.13 eAED:0.15 QI:367|0.8|0.83|1|0.8|0.66|6|218|725; (*GB) gi|356508614|ref|XP_003523050.1| (e_value=0.0) PREDICTED: HIPL1 protein-like [Glycine max];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=0.0) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=0.0) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc03g113490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57669071-57672798 transcript_region:SL2.40ch03:57669071..57672798+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00003105g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.5|0.83|1|0.83|6|0|531; (*GB) gi|255540865|ref|XP_002511497.1| (e_value=0.0) HIPL1 protein precursor, putative [Ricinus communis];; (*SWP) sp|Q94F08|HIPL2_ARATH (e_value=0.0) HIPL2 protein OS=Arabidopsis thaliana GN=HIPL2 PE=1 SV=2;; (*TAIR) AT5G62630.1 (e_value=0.0) | Symbols: HIPL2 | hipl2 protein precursor | chr5:25143719-25146390 REVERSE LENGTH=696;; (*ITAG) Solyc03g113470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57661790-57664014 transcript_region:SL2.40ch03:57661790..57664014+ go_terms:GO:0003824 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *-*- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0003824 NbS00003105g0016.1 protein AED:0.24 eAED:0.25 QI:0|0.83|0.69|1|0.91|0.92|13|0|751; (*GB) gi|255540861|ref|XP_002511495.1| (e_value=0.0) tRNA ligase, putative [Ricinus communis];; (*TAIR) AT1G18950.1 (e_value=0.0) | Symbols: | DDT domain superfamily | chr1:6546539-6551549 FORWARD LENGTH=750;; (*ITAG) Solyc03g113500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57675977-57687123 transcript_region:SL2.40ch03:57675977..57687123+ go_terms:GO:0004812 functional_description:"Aminoacyl-tRNA synthetase (AHRD V1 **-* Q2PF39_TRIPR)"; GO:0004812 NbS00003105g0017.1 protein AED:0.19 eAED:0.22 QI:45|0.5|0.33|1|0.5|0.33|3|0|259; (*GB) gi|225443429|ref|XP_002269450.1| (e_value=2e-68) PREDICTED: uncharacterized protein LOC100263288 [Vitis vinifera];; (*TAIR) AT1G16770.2 (e_value=5e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 103 Blast hits to 103 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 65; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:5738135-5739110 FORWARD LENGTH=276;; (*ITAG) Solyc03g113510.1.1 (e_value=1e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57687718-57688765 transcript_region:SL2.40ch03:57687718..57688765- functional_description:"Contig An16c0080 complete genome (AHRD V1 ***- A2R766_ASPNC)"; NbS00038462g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.83|0.71|1|0.66|0.57|7|0|697; (*GB) gi|297811623|ref|XP_002873695.1| (e_value=0.0) cyclic nucleotide-gated ion channel 18 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LEQ3|CNG18_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1;; (*TAIR) AT5G14870.1 (e_value=0.0) | Symbols: CNGC18, ATCNGC18 | cyclic nucleotide-gated channel 18 | chr5:4808268-4810897 REVERSE LENGTH=706;; (*ITAG) Solyc07g006510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1308919-1317697 transcript_region:SL2.40ch07:1308919..1317697+ go_terms:GO:0005216,GO:0030551 functional_description:"Cyclic nucleotide-gated ion channel 18 (AHRD V1 **** D7M6N7_ARALY); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005216,GO:0030551 NbS00038462g0008.1 protein AED:0.17 eAED:0.17 QI:78|0.63|0.5|1|0.63|0.66|12|160|484; (*GB) gi|225452510|ref|XP_002274863.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SU63|AL2B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1;; (*TAIR) AT3G48000.1 (e_value=0.0) | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase 2B4 | chr3:17717082-17719843 REVERSE LENGTH=538;; (*ITAG) Solyc02g086970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44113673-44117588 transcript_region:SL2.40ch02:44113673..44117588- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 **** Q84V96_LOTCO); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00049567g0004.1 protein AED:0.10 eAED:0.12 QI:24|1|1|1|0.57|0.75|8|189|299; (*GB) gi|224062103|ref|XP_002300756.1| (e_value=3e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0J185|ABAH3_ORYSJ (e_value=2e-54) Abscisic acid 8'-hydroxylase 3 OS=Oryza sativa subsp. japonica GN=CYP707A7 PE=2 SV=1;; (*TAIR) AT1G19630.1 (e_value=2e-121) | Symbols: CYP722A1 | cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476;; (*ITAG) Solyc04g080650.2.1 (e_value=2e-150) genomic_reference:SL2.40ch04 gene_region:62354246-62358818 transcript_region:SL2.40ch04:62354246..62358818- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005973g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|224102859|ref|XP_002312831.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52525.1 (e_value=8e-22) | Symbols: ATOFP6, OFP6 | ovate family protein 6 | chr3:19475159-19475638 FORWARD LENGTH=159;; (*ITAG) Solyc11g068780.1.1 (e_value=6e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:50496070-50496483 transcript_region:SL2.40ch11:50496070..50496483- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SZV1_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00024958g0003.1 protein AED:0.32 eAED:0.32 QI:220|1|0.33|1|1|1|3|0|161; (*GB) gi|225439213|ref|XP_002276082.1| (e_value=7e-56) PREDICTED: uncharacterized protein LOC100241525 [Vitis vinifera];; (*TAIR) AT5G17840.1 (e_value=1e-44) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr5:5895879-5897055 REVERSE LENGTH=154;; (*ITAG) Solyc10g081380.1.1 (e_value=3e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61790717-61792527 transcript_region:SL2.40ch10:61790717..61792527- go_terms:GO:0006457 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00006473g0001.1 protein AED:0.30 eAED:0.31 QI:210|0.42|0.5|1|1|1|8|0|643; (*GB) gi|29467228|dbj|BAC67060.1| (e_value=0.0) DNA methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LXE5|DRM1_ARATH (e_value=1e-137) DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2;; (*TAIR) AT5G15380.1 (e_value=7e-139) | Symbols: DRM1 | domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624;; (*ITAG) Solyc02g062740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00007772g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|1|1|3|0|217; (*GB) gi|224077728|ref|XP_002305382.1| (e_value=1e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4JL84|MYB59_ARATH (e_value=3e-41) Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2;; (*TAIR) AT3G30210.1 (e_value=8e-56) | Symbols: ATMYB121, MYB121 | myb domain protein 121 | chr3:11838567-11840313 FORWARD LENGTH=276;; (*ITAG) Solyc02g089190.1.1 (e_value=8e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45645551-45646453 transcript_region:SL2.40ch02:45645551..45646453+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LRU5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00019005g0007.1 protein AED:0.04 eAED:0.04 QI:114|1|1|1|1|1|4|433|228; (*GB) gi|297739911|emb|CBI30093.3| (e_value=2e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8XGH1|RPAB1_CAEBR (e_value=6e-30) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1;; (*TAIR) AT3G57080.1 (e_value=2e-75) | Symbols: RPB5B, NRPE5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:21125878-21127470 FORWARD LENGTH=222;; (*ITAG) Solyc04g040170.2.1 (e_value=6e-129) genomic_reference:SL2.40ch04 gene_region:31083618-31092516 transcript_region:SL2.40ch04:31083618..31092516+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I (AHRD V1 ***- C1FYH2_PARBD); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00011865g0004.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|225457136|ref|XP_002280359.1| (e_value=2e-82) PREDICTED: peroxidase 65 [Vitis vinifera];; (*SWP) sp|O48677|PER6_ARATH (e_value=4e-67) Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1;; (*TAIR) AT1G24110.1 (e_value=3e-68) | Symbols: | Peroxidase superfamily protein | chr1:8527838-8528818 FORWARD LENGTH=326;; (*ITAG) Solyc05g006230.1.1 (e_value=4e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:896569-897576 transcript_region:SL2.40ch05:896569..897576+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** B2D2H2_BRAOL); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00011865g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.88|0.9|1|0.88|0.8|10|493|370; (*GB) gi|356501218|ref|XP_003519423.1| (e_value=5e-177) PREDICTED: chaperone protein dnaJ 16-like [Glycine max];; (*SWP) sp|Q8VXV4|DNJ16_ARATH (e_value=7e-159) Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1;; (*TAIR) AT1G24120.1 (e_value=6e-160) | Symbols: ARL1 | ARG1-like 1 | chr1:8529283-8531946 REVERSE LENGTH=436;; (*ITAG) Solyc05g006240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:898981-903747 transcript_region:SL2.40ch05:898981..903747- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 16 (AHRD V1 ***- B6THE8_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00011865g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.75|1|1|1|4|239|382; (*GB) gi|225424779|ref|XP_002269424.1| (e_value=4e-180) PREDICTED: IAA-amino acid hydrolase ILR1-like 4-like [Vitis vinifera];; (*SWP) sp|Q84XG9|ILL1_ORYSI (e_value=4e-117) IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1;; (*TAIR) AT1G51760.1 (e_value=9e-118) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc05g006220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:883041-887278 transcript_region:SL2.40ch05:883041..887278- go_terms:GO:0010179 functional_description:"IAA-amino acid hydrolase (AHRD V1 **** D5FTH2_POPTO); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00011865g0010.1 protein AED:0.30 eAED:0.30 QI:237|1|1|1|0.5|0.33|3|326|124; (*GB) gi|225425511|ref|XP_002266305.1| (e_value=3e-45) PREDICTED: uncharacterized protein At4g28440 isoform 2 [Vitis vinifera];; (*SWP) sp|O49453|Y4844_ARATH (e_value=3e-35) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT1G23750.1 (e_value=2e-47) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:8400638-8401171 FORWARD LENGTH=137;; (*ITAG) Solyc05g005510.2.1 (e_value=9e-43) genomic_reference:SL2.40ch05 gene_region:368271-370985 transcript_region:SL2.40ch05:368271..370985+ functional_description:"DNA-binding related protein (Fragment) (AHRD V1 ***- A9XNX9_9MYRT); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00056558g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.6|1|0.5|0.6|5|0|268; (*GB) gi|225453971|ref|XP_002280288.1| (e_value=7e-115) PREDICTED: uncharacterized protein LOC100248806 [Vitis vinifera];; (*TAIR) AT3G60670.1 (e_value=7e-81) | Symbols: | PLATZ transcription factor family protein | chr3:22424695-22426074 REVERSE LENGTH=245;; (*ITAG) Solyc01g091000.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:76462988-76464294 transcript_region:SL2.40ch01:76462988..76464294- go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 **-* D7KGI2_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0008270 NbS00061465g0006.1 protein AED:0.15 eAED:0.16 QI:10|0.77|0.6|1|0.88|0.7|10|0|454; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G22620.2 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=597;; (*ITAG) Solyc11g011310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4355386-4362151 transcript_region:SL2.40ch11:4355386..4362151+ go_terms:GO:0030246 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246 NbS00023762g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.71|1|1|1|7|0|368; (*GB) gi|359484870|ref|XP_002273046.2| (e_value=1e-154) PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Vitis vinifera];; (*SWP) sp|Q94AN4|AP2L1_ARATH (e_value=8e-99) AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1;; (*TAIR) AT1G16060.1 (e_value=6e-100) | Symbols: ADAP | ARIA-interacting double AP2 domain protein | chr1:5508563-5511609 FORWARD LENGTH=345;; (*ITAG) Solyc12g010490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3501040-3504574 transcript_region:SL2.40ch12:3501040..3504574+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00000801g0007.1 protein AED:0.22 eAED:0.22 QI:194|0.78|0.93|1|0.5|0.66|15|226|309; (*GB) gi|297849754|ref|XP_002892758.1| (e_value=6e-176) hypothetical protein ARALYDRAFT_471515 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8T2Q6|CAPTD_DICDI (e_value=1e-11) Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein 4 OS=Dictyostelium discoideum GN=captD PE=3 SV=1;; (*TAIR) AT1G13560.1 (e_value=2e-178) | Symbols: AAPT1, ATAAPT1 | aminoalcoholphosphotransferase 1 | chr1:4638834-4641691 REVERSE LENGTH=389;; (*ITAG) Solyc05g010440.1.1 (e_value=3e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4683101-4684618 transcript_region:SL2.40ch05:4683101..4684618+ functional_description:"CDP-alcohol phosphatidyltransferase (AHRD V1 **-- D3BS60_POLPA)"; NbS00000801g0008.1 protein AED:0.25 eAED:0.28 QI:70|0.85|0.87|1|0.57|0.87|8|241|310; (*GB) gi|225423785|ref|XP_002279949.1| (e_value=6e-109) PREDICTED: uncharacterized protein LOC100256033 isoform 1 [Vitis vinifera];; (*TAIR) AT1G26180.1 (e_value=4e-104) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD LENGTH=289;; (*ITAG) Solyc00g127670.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16688667-16689988 transcript_region:SL2.40ch00:16688667..16689988- functional_description:"Membrane protein (AHRD V1 ***- B6TDF9_MAIZE)"; NbS00057446g0004.1 protein AED:0.28 eAED:0.30 QI:48|0.6|0.5|1|0.6|0.66|6|0|443; (*GB) gi|225447793|ref|XP_002266692.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 8-like [Vitis vinifera];; (*SWP) sp|Q75HX5|TLP8_ORYSJ (e_value=0.0) Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1;; (*TAIR) AT1G43640.1 (e_value=0.0) | Symbols: AtTLP5, TLP5 | tubby like protein 5 | chr1:16439619-16441253 REVERSE LENGTH=429;; (*ITAG) Solyc01g104670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84851303-84854182 transcript_region:SL2.40ch01:84851303..84854182- go_terms:GO:0008020 functional_description:"Tubby-like F-box protein 8 (AHRD V1 ***- TLP8_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0008020 NbS00059056g0005.1 protein AED:0.30 eAED:0.31 QI:232|0.8|0.66|1|0.8|0.83|6|0|508; (*GB) gi|255550387|ref|XP_002516244.1| (e_value=0.0) polygalacturonase, putative [Ricinus communis];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=5e-122) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G42950.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:15015383-15017800 FORWARD LENGTH=484;; (*ITAG) Solyc07g042160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52473909-52486990 transcript_region:SL2.40ch07:52473909..52486990+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbC25707272g0001.1 protein AED:0.09 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|200 NbS00004070g0005.1 protein AED:0.21 eAED:0.41 QI:42|0|0|1|0.66|0.5|4|0|215; (*GB) gi|356516912|ref|XP_003527136.1| (e_value=5e-31) PREDICTED: protein FAM116A-like [Glycine max];; (*TAIR) AT1G73930.2 (e_value=5e-25) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:27795347-27797534 REVERSE LENGTH=623;; (*ITAG) Solyc03g119750.2.1 (e_value=3e-40) genomic_reference:SL2.40ch03 gene_region:62351226-62356072 transcript_region:SL2.40ch03:62351226..62356072- go_terms:GO:0005515 functional_description:"Family with sequence similarity 116 member B (Fragment) (AHRD V1 *--- A6X8I4_HUMAN); contains Interpro domain(s) IPR012860 Protein of unknown function DUF1630 "; GO:0005515 NbS00030359g0003.1 protein AED:0.17 eAED:0.18 QI:445|0.91|0.94|1|0.59|0.60|38|0|1410; (*GB) gi|116047943|gb|ABJ53197.1| (e_value=0.0) myosin XI-2 [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G43900.3 (e_value=0.0) | Symbols: MYA2 | myosin 2 | chr5:17657241-17667413 REVERSE LENGTH=1565;; (*ITAG) Solyc06g008090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1959559-1982019 transcript_region:SL2.40ch06:1959559..1982019- go_terms:GO:0060001 functional_description:"Myosin XI-2 (AHRD V1 ***- B0CN59_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00013638g0001.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|1|1|3|0|340; (*GB) gi|356504953|ref|XP_003521257.1| (e_value=1e-121) PREDICTED: putative nuclease HARBI1-like [Glycine max];; (*TAIR) AT3G63270.1 (e_value=2e-87) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23375932-23377398 REVERSE LENGTH=396;; (*ITAG) Solyc06g084150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45660099-45662380 transcript_region:SL2.40ch06:45660099..45662380- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00013638g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.81|0.91|1|0.90|0.83|12|3457|618; (*GB) gi|296085238|emb|CBI28733.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=0.0) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=0.0) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc06g084140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45654970-45659056 transcript_region:SL2.40ch06:45654970..45659056+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 1 (AHRD V1 **** SUT1_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00060047g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|0|0.25|4|112|324; (*GB) gi|224125822|ref|XP_002319683.1| (e_value=4e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|P10107|ANXA1_MOUSE (e_value=9e-38) Annexin A1 OS=Mus musculus GN=Anxa1 PE=1 SV=2;; (*TAIR) AT2G38760.1 (e_value=1e-26) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc04g078820.2.1 (e_value=1e-28) genomic_reference:SL2.40ch04 gene_region:61081296-61085434 transcript_region:SL2.40ch04:61081296..61085434+ go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00060047g0005.1 protein AED:0.17 eAED:0.17 QI:256|1|1|1|1|1|10|414|351; (*GB) gi|357501685|ref|XP_003621131.1| (e_value=0.0) V-type proton ATPase subunit d2 [Medicago truncatula];; (*SWP) sp|Q9LHA4|VA0D2_ARATH (e_value=0.0) V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1;; (*TAIR) AT3G28715.1 (e_value=0.0) | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10778025-10780350 FORWARD LENGTH=351;; (*ITAG) Solyc10g081530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61897645-61902538 transcript_region:SL2.40ch10:61897645..61902538- go_terms:GO:0033179,GO:0033177 functional_description:"V-type proton ATPase subunit d 1 (AHRD V1 ***- D3PHZ2_9MAXI); contains Interpro domain(s) IPR016727 ATPase, V0 complex, subunit D "; GO:0033179,GO:0033177 NbS00010117g0002.1 protein AED:0.32 eAED:0.49 QI:0|0|0|1|0|0|3|0|124; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-23) hypothetical protein [Nicotiana tabacum]; NbS00045952g0002.1 protein AED:0.31 eAED:0.31 QI:41|0.4|0.66|1|0.2|0.5|6|245|284; (*GB) gi|147790859|emb|CAN61730.1| (e_value=1e-54) hypothetical protein VITISV_019858 [Vitis vinifera];; (*TAIR) AT1G18600.1 (e_value=7e-27) | Symbols: ATRBL12, RBL12 | RHOMBOID-like protein 12 | chr1:6400647-6402587 FORWARD LENGTH=336;; (*ITAG) Solyc12g038590.1.1 (e_value=1e-58) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:36033434-36038370 transcript_region:SL2.40ch12:36033434..36038370+ go_terms:GO:0016021 functional_description:"Rhomboid protease (AHRD V1 *--- B3LIC5_YEAS1); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00003380g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|20020|emb|CAA44226.1| (e_value=5e-90) ribosomal protein L12-1a [Nicotiana tabacum];; (*SWP) sp|P24929|RK12_TOBAC (e_value=2e-91) 50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1;; (*TAIR) AT3G27850.1 (e_value=1e-58) | Symbols: RPL12-C | ribosomal protein L12-C | chr3:10324905-10325468 FORWARD LENGTH=187;; (*ITAG) Solyc02g086730.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43937531-43938103 transcript_region:SL2.40ch02:43937531..43938103+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-C (AHRD V1 ***- Q8LBJ7_ARATH); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00003380g0017.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.66|1|0.4|0.33|6|459|120; (*GB) gi|255567339|ref|XP_002524649.1| (e_value=1e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G14710.1 (e_value=2e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3 (InterPro:IPR018788); Has 120 Blast hits to 120 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr5:4746465-4747776 FORWARD LENGTH=124;; (*ITAG) Solyc02g086780.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:43975823-43976920 transcript_region:SL2.40ch02:43975823..43976920+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018788 Proteasome assembly chaperone 3 "; NbS00003380g0002.1 protein AED:0.21 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|608; (*GB) gi|225452432|ref|XP_002274197.1| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100267992 [Vitis vinifera];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=6e-12) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT5G40340.1 (e_value=3e-54) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:16131654-16134680 REVERSE LENGTH=1008;; (*ITAG) Solyc02g086750.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00003380g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|225452432|ref|XP_002274197.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100267992 [Vitis vinifera];; (*TAIR) AT3G27860.1 (e_value=4e-19) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:10326128-10328086 FORWARD LENGTH=652;; (*ITAG) Solyc02g086750.1.1 (e_value=2e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00003380g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|224060041|ref|XP_002300032.1| (e_value=6e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G14690.1 (e_value=4e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01516.1); Has 86 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 2; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4733862-4734515 REVERSE LENGTH=217;; (*ITAG) Solyc02g086760.1.1 (e_value=5e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43949745-43950413 transcript_region:SL2.40ch02:43949745..43950413- functional_description:"Unknown Protein (AHRD V1)"; NbS00003380g0006.1 protein AED:0.27 eAED:0.27 QI:769|0.95|0.95|1|0.9|0.85|21|304|663; (*GB) gi|225452442|ref|XP_002277585.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264532 [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=2e-117) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT5G14720.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4748212-4752642 REVERSE LENGTH=674;; (*ITAG) Solyc02g086790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43977942-43987261 transcript_region:SL2.40ch02:43977942..43987261- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003380g0018.1 protein AED:0.29 eAED:0.29 QI:202|1|1|1|1|1|5|251|363; (*GB) gi|346680627|gb|AEO45117.1| (e_value=3e-139) cinnamoyl-CoA reductase [Betula platyphylla];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=9e-25) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT5G14700.1 (e_value=1e-111) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368;; (*ITAG) Solyc02g086770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43960980-43964372 transcript_region:SL2.40ch02:43960980..43964372- go_terms:GO:0016621 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 **** Q9LYJ0_ARATH); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0016621 NbS00003380g0115.1 protein AED:0.12 eAED:0.12 QI:355|0.66|0.85|1|0.33|0.42|7|134|238 NbS00003380g0102.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|279 NbS00003380g0111.1 protein AED:0.18 eAED:0.18 QI:0|0.9|0.72|1|0.8|0.81|11|0|1235 NbS00003380g0113.1 protein AED:0.20 eAED:0.20 QI:170|1|1|1|1|1|8|290|428 NbS00003380g0105.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|2|0|681 NbS00052920g0004.1 protein AED:0.24 eAED:0.24 QI:395|0.90|0.83|1|0.63|0.75|12|0|749; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=2e-135) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=2e-101) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc09g091120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65814321-65825428 transcript_region:SL2.40ch09:65814321..65825428- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00043636g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|297740232|emb|CBI30414.3| (e_value=1e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M331|PTR45_ARATH (e_value=2e-12) Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2;; (*TAIR) AT3G53960.1 (e_value=1e-13) | Symbols: | Major facilitator superfamily protein | chr3:19978306-19980886 REVERSE LENGTH=602;; (*ITAG) Solyc10g084950.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00043636g0010.1 protein AED:0.39 eAED:0.49 QI:129|0.75|0.6|1|0.5|0.4|5|0|114; (*GB) gi|167600636|gb|ABZ89178.1| (e_value=6e-51) hypothetical protein 46C02.4 [Coffea canephora];; (*SWP) sp|Q2TBP7|MYCBP_BOVIN (e_value=6e-18) C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3;; (*TAIR) AT2G14045.2 (e_value=2e-42) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:5907133-5908154 FORWARD LENGTH=122;; (*ITAG) Solyc04g009840.2.1 (e_value=2e-60) genomic_reference:SL2.40ch04 gene_region:3163517-3167544 transcript_region:SL2.40ch04:3163517..3167544+ functional_description:"C-Myc-binding protein (AHRD V1 ***- B4FK57_MAIZE)"; NbC23283848g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|225735250|gb|ACO25602.1| (e_value=2e-40) protein kinase-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=6e-31) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=4e-32) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc08g059730.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42426759-42429185 transcript_region:SL2.40ch08:42426759..42429185+ go_terms:GO:0030246,GO:0004672 functional_description:"S-receptor kinase -like protein (AHRD V1 **** O49361_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0030246,GO:0004672 NbS00032668g0001.1 protein AED:0.24 eAED:0.24 QI:0|1|0.6|1|1|1|5|0|755; (*GB) gi|225436013|ref|XP_002273628.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264970 isoform 1 [Vitis vinifera];; (*TAIR) AT2G27090.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr2:11567691-11570345 REVERSE LENGTH=743;; (*ITAG) Solyc09g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:743380-748421 transcript_region:SL2.40ch09:743380..748421+ functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00032668g0008.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|0|0|2|143|303; (*GB) gi|224131754|ref|XP_002328100.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27080.2 (e_value=2e-78) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260;; (*ITAG) Solyc01g009160.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:3172415-3173564 transcript_region:SL2.40ch01:3172415..3173564- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00011044g0013.1 protein AED:0.09 eAED:0.09 QI:46|1|0.5|1|0|0|2|1|27 NbS00011044g0020.1 protein AED:0.13 eAED:0.13 QI:309|1|1|1|0.75|0.8|5|594|280; (*GB) gi|21261784|emb|CAD32500.1| (e_value=0.0) protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum];; (*SWP) sp|O80507|CSK2E_ARATH (e_value=5e-149) Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1;; (*TAIR) AT2G44680.1 (e_value=4e-150) | Symbols: CKB4 | casein kinase II beta subunit 4 | chr2:18426898-18428166 REVERSE LENGTH=283;; (*ITAG) Solyc01g088740.2.1 (e_value=1e-169) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00011044g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|501; (*GB) gi|225423470|ref|XP_002274151.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g69290 [Vitis vinifera];; (*SWP) sp|P0C7R4|PP110_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1;; (*TAIR) AT1G69290.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26047372-26049348 REVERSE LENGTH=658;; (*ITAG) Solyc01g088750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75275866-75278282 transcript_region:SL2.40ch01:75275866..75278282- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWX2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011044g0019.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|0|0.5|2|0|232; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-65) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00011044g0018.1 protein AED:0.38 eAED:0.61 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00011044g0006.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|1|1|3|0|97; (*GB) gi|297739575|emb|CBI29757.3| (e_value=6e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g103960.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:84197683-84209378 transcript_region:SL2.40ch01:84197683..84209378+ go_terms:GO:0043138 functional_description:"ATP-dependent DNA helicase Q1 (AHRD V1 *-** C1GRE2_PARBA); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0043138 NbS00011044g0003.1 protein AED:0.11 eAED:0.11 QI:168|1|1|1|0.5|0.33|3|124|368; (*GB) gi|356522976|ref|XP_003530118.1| (e_value=2e-105) PREDICTED: cytochrome P450 734A6-like [Glycine max];; (*SWP) sp|B9X287|C7346_ORYSJ (e_value=4e-67) Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6 PE=2 SV=1;; (*TAIR) AT5G24910.1 (e_value=4e-87) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc01g088760.2.1 (e_value=2e-152) genomic_reference:SL2.40ch01 gene_region:75279011-75281183 transcript_region:SL2.40ch01:75279011..75281183+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00043679g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|122 NbS00016662g0005.1 protein AED:0.14 eAED:0.14 QI:129|1|1|1|1|1|7|172|340; (*GB) gi|14280354|gb|AAK57535.1| (e_value=0.0) branched-chain amino acid aminotransferase [Capsicum annuum];; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=6e-150) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=5e-151) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc07g021630.2.1 (e_value=2e-175) genomic_reference:SL2.40ch07 gene_region:20382871-20389446 transcript_region:SL2.40ch07:20382871..20389446- go_terms:GO:0004084 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 **** Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0004084 NbS00013208g0005.1 protein AED:0.16 eAED:0.16 QI:40|0.83|0.85|1|0.83|0.85|7|452|600; (*GB) gi|225445031|ref|XP_002280190.1| (e_value=0.0) PREDICTED: gamma-glutamyltranspeptidase 1 [Vitis vinifera];; (*SWP) sp|Q60928|GGT1_MOUSE (e_value=5e-118) Gamma-glutamyltranspeptidase 1 OS=Mus musculus GN=Ggt1 PE=1 SV=1;; (*TAIR) AT4G29210.1 (e_value=0.0) | Symbols: GGT3, GGT4 | gamma-glutamyl transpeptidase 4 | chr4:14400990-14403319 FORWARD LENGTH=637;; (*ITAG) Solyc12g008640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2017171-2020585 transcript_region:SL2.40ch12:2017171..2020585- go_terms:GO:0003840 functional_description:"Gamma-glutamyltransferase-like protein (AHRD V1 ***- Q9M0G0_ARATH); contains Interpro domain(s) IPR000101 Gamma-glutamyltranspeptidase "; GO:0003840 NbS00015581g0008.1 protein AED:0.22 eAED:0.22 QI:205|0.77|0.78|1|0.72|0.78|19|811|442; (*GB) gi|225459166|ref|XP_002283963.1| (e_value=4e-175) PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q38813|DNAJ1_ARATH (e_value=4e-139) Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2;; (*TAIR) AT1G28210.1 (e_value=3e-140) | Symbols: ATJ1 | DNAJ heat shock family protein | chr1:9854598-9859884 FORWARD LENGTH=408;; (*ITAG) Solyc01g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73062943-73079541 transcript_region:SL2.40ch01:73062943..73079541- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TA99_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00030877g0008.1 protein AED:0.16 eAED:0.16 QI:124|1|1|1|0.84|0.78|14|373|674; (*GB) gi|255553045|ref|XP_002517565.1| (e_value=0.0) Boron transporter, putative [Ricinus communis];; (*SWP) sp|Q9XI23|BOR4_ARATH (e_value=0.0) Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1;; (*TAIR) AT1G15460.1 (e_value=0.0) | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683;; (*ITAG) Solyc03g120020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62586853-62591867 transcript_region:SL2.40ch03:62586853..62591867+ go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0005452 NbS00030877g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.42|0.71|1|1|7|0|557; (*GB) gi|350539573|ref|NP_001233940.1| (e_value=0.0) castasterone 26-hydroxylase [Solanum lycopersicum];; (*SWP) sp|O48786|C734A_ARATH (e_value=0.0) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=0.0) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc03g120060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62611911-62620038 transcript_region:SL2.40ch03:62611911..62620038+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00045571g0011.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.85|0.87|8|189|241; (*GB) gi|76573375|gb|ABA46792.1| (e_value=5e-165) triosphosphate isomerase-like protein [Solanum tuberosum];; (*SWP) sp|P48491|TPIS_ARATH (e_value=1e-145) Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2;; (*TAIR) AT3G55440.1 (e_value=8e-147) | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254;; (*ITAG) Solyc06g005490.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:504176-510469 transcript_region:SL2.40ch06:504176..510469+ go_terms:GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** Q3HRV9_SOLTU); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0004807 NbS00045571g0012.1 protein AED:0.00 eAED:0.00 QI:182|1|0.33|1|1|1|3|0|323; (*GB) gi|225449539|ref|XP_002283687.1| (e_value=1e-100) PREDICTED: uncharacterized protein LOC100251328 [Vitis vinifera];; (*TAIR) AT2G39650.1 (e_value=4e-79) | Symbols: | Protein of unknown function (DUF506) | chr2:16528094-16529274 REVERSE LENGTH=291;; (*ITAG) Solyc06g005480.2.1 (e_value=3e-167) genomic_reference:SL2.40ch06 gene_region:488230-492767 transcript_region:SL2.40ch06:488230..492767- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B4FP41_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00008443g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|255538050|ref|XP_002510090.1| (e_value=5e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G59590.1 (e_value=8e-18) | Symbols: ZCF37 | ZCF37 | chr1:21887860-21888495 FORWARD LENGTH=211;; (*ITAG) Solyc04g077810.1.1 (e_value=2e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60294924-60295664 transcript_region:SL2.40ch04:60294924..60295664+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018705g0024.1 protein AED:0.19 eAED:0.21 QI:0|0.33|0.23|0.69|0.75|0.76|13|0|545; (*GB) gi|356538341|ref|XP_003537662.1| (e_value=4e-138) PREDICTED: phospholipase D delta-like isoform 3 [Glycine max];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=4e-135) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.1 (e_value=3e-136) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=868;; (*ITAG) Solyc02g061850.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00018705g0023.1 protein AED:0.30 eAED:0.31 QI:0|0.66|0.75|1|0.33|0.75|4|388|71; (*GB) gi|242050850|ref|XP_002463169.1| (e_value=7e-39) hypothetical protein SORBIDRAFT_02g039000 [Sorghum bicolor];; (*SWP) sp|O82221|RUXG_ARATH (e_value=6e-38) Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1;; (*TAIR) AT2G23930.1 (e_value=5e-39) | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182353-10183026 FORWARD LENGTH=80;; (*ITAG) Solyc11g006820.1.1 (e_value=3e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1390382-1392866 transcript_region:SL2.40ch11:1390382..1392866- functional_description:"Small nuclear ribonucleoprotein G (AHRD V1 ***- B6SK31_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00018705g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|71 NbS00000818g0003.1 protein AED:0.24 eAED:0.25 QI:402|0.6|0.54|0.90|0.7|0.63|11|0|1052; (*GB) gi|147845501|emb|CAN80611.1| (e_value=0.0) hypothetical protein VITISV_035392 [Vitis vinifera];; (*SWP) sp|Q8CCN5|BCAS3_MOUSE (e_value=8e-37) Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2;; (*TAIR) AT1G54710.1 (e_value=0.0) | Symbols: ATATG18H, ATG18H | homolog of yeast autophagy 18 (ATG18) H | chr1:20417019-20420733 REVERSE LENGTH=927;; (*ITAG) Solyc01g098430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80701693-80711358 transcript_region:SL2.40ch01:80701693..80711358- functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00018192g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|259; (*GB) gi|147827528|emb|CAN73028.1| (e_value=1e-76) hypothetical protein VITISV_031107 [Vitis vinifera];; (*SWP) sp|Q9STX9|TIP51_ARATH (e_value=5e-62) Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1;; (*TAIR) AT3G47440.1 (e_value=4e-63) | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1 | chr3:17482054-17482987 FORWARD LENGTH=256;; (*ITAG) Solyc03g093230.2.1 (e_value=2e-112) genomic_reference:SL2.40ch03 gene_region:47871665-47872979 transcript_region:SL2.40ch03:47871665..47872979+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q39956_HELAN); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00018192g0006.1 protein AED:0.24 eAED:0.25 QI:0|0.91|0.92|1|0.91|0.84|13|132|542; (*GB) gi|302140656|gb|ADK95138.1| (e_value=0.0) nitric oxide-associated protein 1 [Nicotiana attenuata];; (*SWP) sp|Q6YPG5|NOS_ORYSJ (e_value=0.0) Putative nitric oxide synthase OS=Oryza sativa subsp. japonica GN=Os02g0104700 PE=3 SV=1;; (*TAIR) AT3G47450.2 (e_value=0.0) | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:17483195-17486249 REVERSE LENGTH=561;; (*ITAG) Solyc03g093240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47874481-47880681 transcript_region:SL2.40ch03:47874481..47880681+ go_terms:GO:0003924 functional_description:"GTP-binding protein YqeH (AHRD V1 **-- C6VPQ3_LACPJ); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0003924 NbS00018973g0006.1 protein AED:0.31 eAED:0.31 QI:119|0.90|0.83|0.91|0.90|0.91|12|0|477; (*GB) gi|359480030|ref|XP_002272358.2| (e_value=0.0) PREDICTED: TBC1 domain family member 25-like [Vitis vinifera];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=1e-32) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT2G20440.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:8811034-8813251 REVERSE LENGTH=425;; (*ITAG) Solyc09g066420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60429072-60441494 transcript_region:SL2.40ch09:60429072..60441494- go_terms:GO:0051103,GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q7TPU5_MOUSE); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0051103,GO:0005622 NbS00042404g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|266; (*GB) gi|225427177|ref|XP_002277740.1| (e_value=4e-73) PREDICTED: RING-H2 finger protein ATL29 [Vitis vinifera];; (*SWP) sp|O49691|ATL29_ARATH (e_value=3e-60) RING-H2 finger protein ATL29 OS=Arabidopsis thaliana GN=ATL29 PE=2 SV=1;; (*TAIR) AT4G17920.1 (e_value=2e-61) | Symbols: | RING/U-box superfamily protein | chr4:9963221-9964090 REVERSE LENGTH=289;; (*ITAG) Solyc08g076800.2.1 (e_value=4e-113) genomic_reference:SL2.40ch08 gene_region:57874533-57875579 transcript_region:SL2.40ch08:57874533..57875579+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00037700g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|597; (*GB) gi|225464722|ref|XP_002264062.1| (e_value=0.0) PREDICTED: ATPase WRNIP1-like [Vitis vinifera];; (*SWP) sp|Q8CG07|WRIP1_RAT (e_value=1e-139) ATPase WRNIP1 OS=Rattus norvegicus GN=Wrnip1 PE=2 SV=1;; (*TAIR) AT1G24290.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:8612650-8614227 REVERSE LENGTH=525;; (*ITAG) Solyc03g118320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61288521-61290272 transcript_region:SL2.40ch03:61288521..61290272+ go_terms:GO:0043142,GO:0043130 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 *--* RUVB_CHLSY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0043142,GO:0043130 NbS00057663g0004.1 protein AED:0.34 eAED:0.34 QI:2|0.77|0.8|1|0.77|0.8|10|255|287; (*GB) gi|82621136|gb|ABB86256.1| (e_value=4e-170) eukaryotic translation initiation factor 2 beta subunit-like [Solanum tuberosum];; (*SWP) sp|O24473|IF2B_WHEAT (e_value=3e-137) Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1;; (*TAIR) AT5G20920.3 (e_value=3e-130) | Symbols: EIF2 BETA | eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=268;; (*ITAG) Solyc06g082580.2.1 (e_value=6e-173) genomic_reference:SL2.40ch06 gene_region:44640508-44646549 transcript_region:SL2.40ch06:44640508..44646549- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 beta subunit-like (AHRD V1 **** Q2V9B2_SOLTU); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0005515,GO:0003743 NbS00009986g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|93; (*GB) gi|297824487|ref|XP_002880126.1| (e_value=1e-18) mtACP-1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P53665|ACPM1_ARATH (e_value=6e-20) Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1;; (*TAIR) AT2G44620.1 (e_value=5e-21) | Symbols: MTACP-1, MTACP1 | mitochondrial acyl carrier protein 1 | chr2:18414320-18415065 FORWARD LENGTH=122;; (*ITAG) Solyc01g088570.2.1 (e_value=3e-38) genomic_reference:SL2.40ch01 gene_region:75108128-75111768 transcript_region:SL2.40ch01:75108128..75111768+ go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- B9SKH3_RICCO); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00009986g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.8|1|0.5|0.8|5|272|426; (*GB) gi|225453254|ref|XP_002265990.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256535 [Vitis vinifera];; (*TAIR) AT2G44640.1 (e_value=2e-155) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3769 (InterPro:IPR022244); BEST Arabidopsis thaliana protein match is: pigment defective 320 (TAIR:AT3G06960.1); Has 49 Blast hits to 48 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:18417286-18419063 FORWARD LENGTH=451;; (*ITAG) Solyc01g088600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75126461-75132206 transcript_region:SL2.40ch01:75126461..75132206+ functional_description:"PDE320 (AHRD V1 ***- D7L613_ARALY)"; NbS00009986g0012.1 protein AED:0.51 eAED:0.64 QI:0|0|0|0.57|0.5|0.57|7|0|278; (*GB) gi|225453283|ref|XP_002269021.1| (e_value=7e-55) PREDICTED: uncharacterized protein LOC100263389 [Vitis vinifera];; (*TAIR) AT1G02180.1 (e_value=1e-39) | Symbols: | ferredoxin-related | chr1:413619-414505 REVERSE LENGTH=226;; (*ITAG) Solyc01g088620.2.1 (e_value=1e-76) genomic_reference:SL2.40ch01 gene_region:75136486-75139507 transcript_region:SL2.40ch01:75136486..75139507+ functional_description:"Ferredoxin-like (AHRD V1 ***- Q6EP30_ORYSJ)"; NbS00009986g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|145; (*GB) gi|1616628|emb|CAA56643.1| (e_value=2e-55) sts15 [Solanum tuberosum];; (*SWP) sp|Q8GT41|PLA1_PLAAC (e_value=1e-19) Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1;; (*ITAG) Solyc01g088590.2.1 (e_value=2e-65) genomic_reference:SL2.40ch01 gene_region:75117950-75118668 transcript_region:SL2.40ch01:75117950..75118668- go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- A7IZL0_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00009986g0013.1 protein AED:0.52 eAED:0.52 QI:27|1|0.5|1|1|0.75|4|135|19 NbS00017812g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|193527444|gb|ACF19787.1| (e_value=3e-155) NAC transcription factor [Nicotiana tabacum];; (*TAIR) AT5G04410.1 (e_value=9e-12) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=5e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00017812g0002.1 protein AED:0.15 eAED:0.16 QI:0|0|0.5|1|0|0.5|2|1403|222; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C8Q7|PP369_ARATH (e_value=1e-32) Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1;; (*TAIR) AT5G08305.1 (e_value=1e-33) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:2670134-2671738 REVERSE LENGTH=534;; (*ITAG) Solyc06g066380.1.1 (e_value=7e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00017812g0015.1 protein AED:0.24 eAED:0.24 QI:272|1|1|1|1|1|3|310|90; (*GB) gi|4530585|gb|AAD22104.1| (e_value=2e-46) B12D protein [Ipomoea batatas];; (*TAIR) AT3G48140.1 (e_value=3e-36) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc03g113730.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:57844615-57845617 transcript_region:SL2.40ch03:57844615..57845617+ functional_description:"B12D protein (AHRD V1 ***- Q9XHD5_IPOBA); contains Interpro domain(s) IPR010530 B12D "; NbS00017812g0007.1 protein AED:0.38 eAED:0.58 QI:0|0|0|1|1|1|2|0|199; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=6e-101) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=2e-90) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=2e-71) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=1e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017812g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|177; (*GB) gi|225440183|ref|XP_002278250.1| (e_value=4e-52) PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=4e-16) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT4G13870.1 (e_value=2e-17) | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=285;; (*ITAG) Solyc10g078200.1.1 (e_value=1e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59393409-59394026 transcript_region:SL2.40ch10:59393409..59394026+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00045194g0002.1 protein AED:0.09 eAED:0.27 QI:0|0|0|1|0|0|2|0|118 NbS00016810g0006.1 protein AED:0.00 eAED:0.00 QI:135|1|1|1|1|1|2|112|81; (*GB) gi|225459040|ref|XP_002285628.1| (e_value=3e-17) PREDICTED: uncharacterized protein LOC100243668 [Vitis vinifera];; (*TAIR) AT2G38465.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:16106393-16106810 REVERSE LENGTH=84; NbS00016810g0001.1 protein AED:0.30 eAED:0.30 QI:332|0.83|0.57|1|0.83|0.57|7|0|309; (*GB) gi|343409100|gb|AEM23830.1| (e_value=3e-99) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=4e-62) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT1G70080.1 (e_value=6e-39) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:26394669-26397565 REVERSE LENGTH=611;; (*ITAG) Solyc07g051940.2.1 (e_value=2e-102) genomic_reference:SL2.40ch07 gene_region:57815208-57818076 transcript_region:SL2.40ch07:57815208..57818076- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00045597g0006.1 protein AED:0.29 eAED:0.29 QI:122|1|0.8|1|1|1|5|0|322; (*GB) gi|255561675|ref|XP_002521847.1| (e_value=4e-63) Armadillo repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q28DS3|RN170_XENTR (e_value=9e-21) RING finger protein 170 OS=Xenopus tropicalis GN=rnf170 PE=2 SV=1;; (*TAIR) AT4G33940.1 (e_value=8e-69) | Symbols: | RING/U-box superfamily protein | chr4:16266085-16267612 FORWARD LENGTH=262;; (*ITAG) Solyc01g103980.2.1 (e_value=7e-150) genomic_reference:SL2.40ch01 gene_region:84215760-84219412 transcript_region:SL2.40ch01:84215760..84219412+ go_terms:GO:0008270 functional_description:"RING finger protein 170 (AHRD V1 *-*- B5X7S9_SALSA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00045597g0007.1 protein AED:0.11 eAED:0.14 QI:0|0.58|0.69|0.92|0.75|0.76|13|329|1276; (*GB) gi|359486036|ref|XP_002267907.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253141 [Vitis vinifera];; (*TAIR) AT1G22930.1 (e_value=0.0) | Symbols: | T-complex protein 11 | chr1:8117521-8121854 FORWARD LENGTH=1131;; (*ITAG) Solyc01g103990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84219864-84227006 transcript_region:SL2.40ch01:84219864..84227006- functional_description:"T-complex protein 11 (AHRD V1 ***- D7KML1_ARALY); contains Interpro domain(s) IPR008862 T-complex 11 "; NbS00030128g0001.1 protein AED:0.12 eAED:0.19 QI:0|0.75|0.8|1|0|0|5|305|91 NbS00009309g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|791; (*GB) gi|359486440|ref|XP_002275845.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g59700-like [Vitis vinifera];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=0.0) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=0.0) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc05g054860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63814538-63816973 transcript_region:SL2.40ch05:63814538..63816973+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00005801g0010.1 protein AED:0.04 eAED:0.04 QI:317|1|1|1|0.5|0.33|3|268|152; (*GB) gi|225433045|ref|XP_002284723.1| (e_value=3e-56) PREDICTED: CASP-like protein At3g23200 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L7R5|CSPLG_ARATH (e_value=4e-49) CASP-like protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1;; (*TAIR) AT3G23200.1 (e_value=3e-50) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:8281659-8282603 FORWARD LENGTH=152;; (*ITAG) Solyc09g089850.2.1 (e_value=4e-77) genomic_reference:SL2.40ch09 gene_region:64832564-64835830 transcript_region:SL2.40ch09:64832564..64835830+ functional_description:"UPF0497 membrane protein At3g23200 (AHRD V1 ***- U497J_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00005801g0001.1 protein AED:0.35 eAED:0.35 QI:0|1|1|1|1|1|2|5|200; (*GB) gi|225433035|ref|XP_002284663.1| (e_value=3e-87) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=7e-80) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=5e-81) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g089770.2.1 (e_value=5e-111) genomic_reference:SL2.40ch09 gene_region:64808312-64809468 transcript_region:SL2.40ch09:64808312..64809468+ go_terms:GO:0010302,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0009815 NbS00005801g0013.1 protein AED:0.43 eAED:0.51 QI:0|0|0|1|0|0|2|0|89; (*ITAG) Solyc09g089770.2.1 (e_value=3e-29) genomic_reference:SL2.40ch09 gene_region:64808312-64809468 transcript_region:SL2.40ch09:64808312..64809468+ go_terms:GO:0010302,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0009815 NbS00015465g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|15217591|ref|NP_171702.1| (e_value=0.0) UDP-D-glucuronate 4-epimerase 2 [Arabidopsis thaliana];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=0.0) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc03g083550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47036392-47037612 transcript_region:SL2.40ch03:47036392..47037612- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00015465g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|0.6|0.66|6|580|167; (*GB) gi|224120234|ref|XP_002318279.1| (e_value=7e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVA7|ICLN_ARATH (e_value=2e-22) Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana GN=At5g62290 PE=2 SV=1;; (*TAIR) AT5G62290.2 (e_value=8e-25) | Symbols: | nucleotide-sensitive chloride conductance regulator (ICln) family protein | chr5:25019568-25020972 FORWARD LENGTH=228;; (*ITAG) Solyc03g083540.2.1 (e_value=2e-44) genomic_reference:SL2.40ch03 gene_region:47028518-47035641 transcript_region:SL2.40ch03:47028518..47035641+ go_terms:GO:0005216 functional_description:"Methylosome subunit pICln (AHRD V1 ***- B4FU22_MAIZE); contains Interpro domain(s) IPR003521 Nucleotide-sensitive chloride conductance regulator "; GO:0005216 NbS00043331g0005.1 protein AED:0.01 eAED:0.02 QI:0|0|0.5|1|0|0|2|0|114; (*GB) gi|57013930|ref|YP_173403.1| (e_value=3e-73) ribosomal protein S13 [Nicotiana tabacum];; (*SWP) sp|P05488|RT13_TOBAC (e_value=8e-75) Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2;; (*TAIR) AT1G77750.1 (e_value=2e-14) | Symbols: | Ribosomal protein S13/S18 family | chr1:29230346-29231490 REVERSE LENGTH=154;; (*ITAG) Solyc11g056310.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43097177-43097491 transcript_region:SL2.40ch11:43097177..43097491- go_terms:GO:0003676,GO:0005840 functional_description:"30S ribosomal protein S13 (AHRD V1 ***- D3L425_9BACT); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003676,GO:0005840 NbS00015183g0004.1 protein AED:0.20 eAED:0.21 QI:0|0.6|0.16|1|0.2|0.33|6|0|227; (*GB) gi|359486373|ref|XP_002277384.2| (e_value=2e-101) PREDICTED: uncharacterized protein LOC100262072 [Vitis vinifera];; (*TAIR) AT2G40320.1 (e_value=7e-103) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052440.1.1 (e_value=1e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61804940-61808986 transcript_region:SL2.40ch05:61804940..61808986- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00015183g0005.1 protein AED:0.36 eAED:0.60 QI:0|0|0.5|1|1|0.5|2|0|109; (*GB) gi|357492809|ref|XP_003616693.1| (e_value=5e-28) CCP [Medicago truncatula];; (*TAIR) AT2G40320.1 (e_value=8e-27) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052440.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61804940-61808986 transcript_region:SL2.40ch05:61804940..61808986- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00029045g0011.1 protein AED:0.12 eAED:0.12 QI:192|1|0.66|1|1|1|3|0|346; (*GB) gi|10798760|dbj|BAB16432.1| (e_value=0.0) WRKY transcription factor NtEIG-D48 [Nicotiana tabacum];; (*SWP) sp|Q9STX0|WRKY7_ARATH (e_value=5e-86) Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1;; (*TAIR) AT4G24240.1 (e_value=4e-87) | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein 7 | chr4:12571930-12573446 FORWARD LENGTH=353;; (*ITAG) Solyc04g078550.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60852591-60854416 transcript_region:SL2.40ch04:60852591..60854416+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- A7UGC9_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00029045g0013.1 protein AED:0.15 eAED:0.23 QI:0|0|0|1|0.25|0.4|5|0|388; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-92) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc03g044360.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00029045g0012.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|1|1|3|0|139; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g015800.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11015336-11017255 transcript_region:SL2.40ch09:11015336..11017255- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00000520g0010.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0.5|2|0|607; (*GB) gi|224055319|ref|XP_002298478.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RE70|INT3_PONAB (e_value=1e-87) Integrator complex subunit 3 OS=Pongo abelii GN=INTS3 PE=2 SV=1;; (*TAIR) AT4G14590.1 (e_value=6e-172) | Symbols: emb2739 | embryo defective 2739 | chr4:8374391-8375962 FORWARD LENGTH=508;; (*ITAG) Solyc06g071630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40506198-40507703 transcript_region:SL2.40ch06:40506198..40507703- functional_description:"Integrator complex subunit 3 homolog (AHRD V1 ***- INT3_DROMO); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00000520g0011.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|63 NbS00000520g0002.1 protein AED:0.23 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|224134020|ref|XP_002327736.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUB8|SKI22_ARATH (e_value=2e-35) F-box protein SKIP22 OS=Arabidopsis thaliana GN=SKIP22 PE=1 SV=1;; (*TAIR) AT1G23780.1 (e_value=1e-36) | Symbols: | F-box family protein | chr1:8407053-8408480 REVERSE LENGTH=475;; (*ITAG) Solyc01g006990.2.1 (e_value=2e-145) genomic_reference:SL2.40ch01 gene_region:1556952-1559079 transcript_region:SL2.40ch01:1556952..1559079- go_terms:GO:0003779 functional_description:"F-box family protein (AHRD V1 ***- D7KNJ0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0003779 NbS00000520g0003.1 protein AED:0.36 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|356534264|ref|XP_003535677.1| (e_value=2e-16) PREDICTED: F-box protein SKIP22-like [Glycine max];; (*ITAG) Solyc01g006990.2.1 (e_value=4e-47) genomic_reference:SL2.40ch01 gene_region:1556952-1559079 transcript_region:SL2.40ch01:1556952..1559079- go_terms:GO:0003779 functional_description:"F-box family protein (AHRD V1 ***- D7KNJ0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0003779 NbS00021153g0003.1 protein AED:0.23 eAED:0.38 QI:213|0|0.5|1|0|0.5|2|0|91 NbS00021153g0006.1 protein AED:0.15 eAED:0.21 QI:178|0.75|0.8|1|0.25|0.2|5|344|271; (*GB) gi|357449361|ref|XP_003594957.1| (e_value=4e-77) NifU-like protein [Medicago truncatula];; (*SWP) sp|Q84RQ7|NIFU3_ARATH (e_value=9e-67) NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1;; (*TAIR) AT4G25910.1 (e_value=7e-68) | Symbols: NFU3, ATCNFU3 | NFU domain protein 3 | chr4:13164128-13165094 FORWARD LENGTH=236;; (*ITAG) Solyc05g044630.2.1 (e_value=5e-95) genomic_reference:SL2.40ch05 gene_region:56380935-56383356 transcript_region:SL2.40ch05:56380935..56383356+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_ACIAD); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00006916g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0.5|1|0|0.5|2|453|176; (*GB) gi|225437416|ref|XP_002271045.1| (e_value=3e-70) PREDICTED: uncharacterized protein LOC100265898 [Vitis vinifera];; (*TAIR) AT1G02816.1 (e_value=2e-64) | Symbols: | Protein of unknown function, DUF538 | chr1:621637-622137 FORWARD LENGTH=166;; (*ITAG) Solyc09g075220.1.1 (e_value=2e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:62491051-62491602 transcript_region:SL2.40ch09:62491051..62491602- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00006916g0006.1 protein AED:0.00 eAED:0.00 QI:274|1|1|1|1|1|2|219|99; (*GB) gi|76573297|gb|ABA46753.1| (e_value=9e-28) unknown [Solanum tuberosum];; (*ITAG) Solyc09g075210.2.1 (e_value=4e-29) genomic_reference:SL2.40ch09 gene_region:62481770-62483310 transcript_region:SL2.40ch09:62481770..62483310+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant protein 5 (AHRD V1 ***- Q1HGG0_9ROSI); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 "; GO:0006950 NbS00006916g0008.1 protein AED:0.32 eAED:0.41 QI:51|0|0|0.33|0.4|0.5|6|0|275; (*GB) gi|47825035|gb|AAT38805.1| (e_value=2e-36) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=2e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032688g0008.1 protein AED:0.00 eAED:0.00 QI:80|1|1|1|1|1|2|125|145; (*ITAG) Solyc09g091390.2.1 (e_value=3e-17) genomic_reference:SL2.40ch09 gene_region:66023489-66024501 transcript_region:SL2.40ch09:66023489..66024501- functional_description:"Unknown Protein (AHRD V1)"; NbS00032688g0007.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|109 NbS00032688g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.57|0.37|0.75|0.28|0.25|8|0|1056; (*GB) gi|297741907|emb|CBI33342.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04650.1 (e_value=0.0) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:1294893-1298903 REVERSE LENGTH=997;; (*ITAG) Solyc09g091370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66013727-66018641 transcript_region:SL2.40ch09:66013727..66018641- functional_description:"At1g04650-like protein (Fragment) (AHRD V1 *-*- C0JC61_9BRAS)"; NbS00001120g0002.1 protein AED:0.39 eAED:0.39 QI:152|0|0.5|0.5|1|1|2|0|62 NbS00009452g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.54|1|0.3|0.27|11|0|613; (*GB) gi|346983342|emb|CCD33018.1| (e_value=0.0) 8-hydroxy-copalyl diphosphate synthase [Nicotiana tabacum];; (*SWP) sp|O04408|KSA_PEA (e_value=3e-174) Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G02780.1 (e_value=3e-152) | Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802;; (*ITAG) Solyc08g005710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:565586-570966 transcript_region:SL2.40ch08:565586..570966+ go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U6_9ORYZ); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00049356g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|896; (*GB) gi|364285559|gb|AEW48197.1| (e_value=0.0) disease resistance protein RGH3 [Solanum x edinense];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=6e-95) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=5e-64) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc12g009450.1.1 (e_value=4e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00049356g0004.1 protein AED:0.17 eAED:0.31 QI:0|0|0|1|0|0|5|0|323; (*GB) gi|364285559|gb|AEW48197.1| (e_value=1e-53) disease resistance protein RGH3 [Solanum x edinense];; (*SWP) sp|Q6L439|R1A4_SOLDE (e_value=7e-13) Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2;; (*ITAG) Solyc12g009460.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2723092-2725815 transcript_region:SL2.40ch12:2723092..2725815+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbC25532326g0003.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|1|0.5|4|0|103; (*GB) gi|226505236|ref|NP_001150076.1| (e_value=3e-46) LOC100283705 [Zea mays];; (*SWP) sp|Q75KU4|CNBL4_ORYSJ (e_value=1e-44) Calcineurin B-like protein 4 OS=Oryza sativa subsp. japonica GN=CBL4 PE=1 SV=1;; (*TAIR) AT1G64480.1 (e_value=4e-42) | Symbols: CBL8 | calcineurin B-like protein 8 | chr1:23948028-23949751 REVERSE LENGTH=214;; (*ITAG) Solyc08g065330.2.1 (e_value=1e-43) genomic_reference:SL2.40ch08 gene_region:50446717-50455805 transcript_region:SL2.40ch08:50446717..50455805+ go_terms:GO:0005515 functional_description:"Calcineurin B-like protein 06 (AHRD V1 ***- C4P7Z3_VITVI); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005515 NbS00030965g0004.1 protein AED:0.44 eAED:0.44 QI:27|0.33|0.25|1|0|0|4|217|91; (*TAIR) AT1G18410.1 (e_value=9e-13) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:6336528-6342460 REVERSE LENGTH=1140;; (*ITAG) Solyc12g036810.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:32899136-32904401 transcript_region:SL2.40ch12:32899136..32904401+ go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 *-*- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00030965g0005.1 protein AED:0.09 eAED:0.09 QI:67|1|1|1|0|0.33|3|286|283; (*GB) gi|225451371|ref|XP_002263857.1| (e_value=3e-112) PREDICTED: cysteine-rich repeat secretory protein 60-like [Vitis vinifera];; (*SWP) sp|Q0WPN8|CRR60_ARATH (e_value=9e-96) Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1;; (*TAIR) AT5G37660.1 (e_value=4e-97) | Symbols: PDLP7 | plasmodesmata-located protein 7 | chr5:14959842-14961379 FORWARD LENGTH=288;; (*ITAG) Solyc11g011000.1.1 (e_value=7e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4035720-4037923 transcript_region:SL2.40ch11:4035720..4037923+ functional_description:"Cysteine-rich repeat secretory protein 60 (AHRD V1 ***- CRR60_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00030965g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|28207685|gb|AAO32066.1| (e_value=2e-64) Erwinia induced protein 2 [Solanum tuberosum];; (*TAIR) AT5G17190.1 (e_value=1e-61) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5652310-5652702 FORWARD LENGTH=130;; (*ITAG) Solyc11g011010.1.1 (e_value=2e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4040728-4041120 transcript_region:SL2.40ch11:4040728..4041120+ functional_description:"Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)"; NbS00051045g0006.1 protein AED:0.25 eAED:0.25 QI:92|1|0.85|1|0.83|1|7|0|386; (*GB) gi|359492400|ref|XP_002285845.2| (e_value=9e-162) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-69) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G08300.1 (e_value=6e-156) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:5245024-5248153 FORWARD LENGTH=373;; (*ITAG) Solyc11g012930.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5776686-5779737 transcript_region:SL2.40ch11:5776686..5779737+ go_terms:GO:0016020 functional_description:"Nodulin family protein (AHRD V1 ***- A7L2Z5_GOSHI); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbC26325369g0001.1 protein AED:0.43 eAED:0.43 QI:0|0|0.33|0.83|1|1|6|0|156; (*GB) gi|297727021|ref|NP_001175874.1| (e_value=7e-14) Os09g0462901 [Oryza sativa Japonica Group];; (*SWP) sp|Q8L9Y0|SCP25_ARATH (e_value=8e-11) Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=4e-16) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g108450.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:87539763-87543344 transcript_region:SL2.40ch01:87539763..87543344- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00052708g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|398; (*GB) gi|224095660|ref|XP_002310427.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9HDC9|APMAP_HUMAN (e_value=1e-54) Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2;; (*TAIR) AT3G59530.2 (e_value=0.0) | Symbols: LAP3 | Calcium-dependent phosphotriesterase superfamily protein | chr3:21993710-21995164 FORWARD LENGTH=403;; (*ITAG) Solyc03g053130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20272424-20274176 transcript_region:SL2.40ch03:20272424..20274176- go_terms:GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- Q58L86_BRANA); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00052708g0008.1 protein AED:0.18 eAED:0.20 QI:47|0|0.33|1|0|0|3|324|648; (*GB) gi|225426090|ref|XP_002276602.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255255 [Vitis vinifera];; (*SWP) sp|Q9SZ67|WRK19_ARATH (e_value=1e-54) Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1;; (*TAIR) AT1G64140.1 (e_value=3e-179) | Symbols: | BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). | chr1:23804069-23806009 REVERSE LENGTH=646;; (*ITAG) Solyc08g081760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:61891120-61893165 transcript_region:SL2.40ch08:61891120..61893165- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00002524g0010.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|0|0.5|2|0|577; (*GB) gi|225441064|ref|XP_002277923.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Vitis vinifera];; (*SWP) sp|Q9FFN1|PP363_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1;; (*TAIR) AT5G03800.1 (e_value=0.0) | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1010894-1013584 REVERSE LENGTH=896;; (*ITAG) Solyc01g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80488056-80490928 transcript_region:SL2.40ch01:80488056..80490928- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002524g0009.1 protein AED:0.30 eAED:0.30 QI:16|0.33|0.42|1|1|1|7|0|537; (*GB) gi|255542430|ref|XP_002512278.1| (e_value=0.0) Serine/threonine-protein kinase cdk9, putative [Ricinus communis];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=572;; (*ITAG) Solyc01g098160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80491793-80500920 transcript_region:SL2.40ch01:80491793..80500920- go_terms:GO:0005515 functional_description:"Cell division protein kinase 12 (AHRD V1 ***- CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00002524g0004.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|227; (*GB) gi|225441064|ref|XP_002277923.1| (e_value=1e-89) PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Vitis vinifera];; (*SWP) sp|Q9FFN1|PP363_ARATH (e_value=2e-70) Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1;; (*TAIR) AT5G03800.1 (e_value=1e-71) | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1010894-1013584 REVERSE LENGTH=896;; (*ITAG) Solyc01g098150.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:80488056-80490928 transcript_region:SL2.40ch01:80488056..80490928- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00016348g0004.1 protein AED:0.04 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|413; (*GB) gi|225460684|ref|XP_002266948.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253756 [Vitis vinifera];; (*TAIR) AT2G31290.2 (e_value=0.0) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:13344151-13345398 FORWARD LENGTH=415;; (*ITAG) Solyc04g071290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55811077-55818764 transcript_region:SL2.40ch04:55811077..55818764+ go_terms:GO:0016020,GO:0005622 functional_description:"Mitochondrial substrate carrier (Fragment) (AHRD V1 *-*- B3VXY3_POPTN); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0016020,GO:0005622 NbS00016348g0003.1 protein AED:0.31 eAED:0.49 QI:0|0|0|1|0|0|2|0|143; (*GB) gi|255539871|ref|XP_002511000.1| (e_value=9e-15) hypothetical protein RCOM_1501190 [Ricinus communis];; (*ITAG) Solyc04g071270.1.1 (e_value=8e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55799722-55800912 transcript_region:SL2.40ch04:55799722..55800912- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC24852409g0002.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|0.5|0|3|0|137; (*GB) gi|225456475|ref|XP_002284543.1| (e_value=5e-36) PREDICTED: auxin response factor 2 [Vitis vinifera];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=6e-27) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=5e-28) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=4e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00048536g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|358; (*GB) gi|83283995|gb|ABC01905.1| (e_value=0.0) fructose-bisphosphate aldolase-like protein [Solanum tuberosum];; (*SWP) sp|P17784|ALF_ORYSJ (e_value=0.0) Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2;; (*TAIR) AT2G36460.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc09g009260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2643600-2645801 transcript_region:SL2.40ch09:2643600..2645801- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q2PYX3_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00018185g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|375; (*GB) gi|225458313|ref|XP_002281510.1| (e_value=2e-169) PREDICTED: uncharacterized protein LOC100257372 [Vitis vinifera];; (*TAIR) AT5G66740.1 (e_value=3e-152) | Symbols: | Protein of unknown function (DUF620) | chr5:26647114-26648558 FORWARD LENGTH=370;; (*ITAG) Solyc07g022840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:22795953-22797361 transcript_region:SL2.40ch07:22795953..22797361+ functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00018185g0003.1 protein AED:0.35 eAED:0.49 QI:0|0|0|0.75|1|1|4|0|155; (*GB) gi|75172033|sp|Q9FPN0.1|NEC1_PETHY (e_value=7e-18) RecName: Full=Bidirectional sugar transporter NEC1; AltName: Full=NEC1;; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=2e-19) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT2G39060.1 (e_value=1e-14) | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family protein | chr2:16306818-16308206 REVERSE LENGTH=258; NbS00058341g0003.1 protein AED:0.17 eAED:0.35 QI:0|0|0|1|0|0|4|0|295; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-95) hypothetical protein [Nicotiana tabacum]; NbS00058341g0004.1 protein AED:0.25 eAED:0.60 QI:55|0|0|1|0|0|3|0|67 NbS00009125g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|184; (*GB) gi|334902911|gb|AEH25587.1| (e_value=2e-21) transposase [Solanum demissum];; (*ITAG) Solyc04g025250.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18317784-18321583 transcript_region:SL2.40ch04:18317784..18321583+ go_terms:GO:0003677 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00009125g0003.1 protein AED:0.24 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|289; (*GB) gi|190333406|gb|ACE73696.1| (e_value=1e-117) DREB4 [Nicotiana tabacum];; (*SWP) sp|Q9M0L0|DRE1A_ARATH (e_value=2e-68) Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2;; (*TAIR) AT4G25480.1 (e_value=2e-69) | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018353-13019003 REVERSE LENGTH=216;; (*ITAG) Solyc03g026270.1.1 (e_value=1e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8091698-8092315 transcript_region:SL2.40ch03:8091698..8092315+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00009125g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|233 NbS00017548g0003.1 protein AED:0.42 eAED:0.96 QI:0|0|0|1|1|1|2|0|80 NbS00017548g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0|0.33|3|3485|724; (*GB) gi|224124974|ref|XP_002319471.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FXB9|PPR84_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1;; (*TAIR) AT1G56690.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:21253817-21255931 FORWARD LENGTH=704;; (*ITAG) Solyc06g064600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36648027-36650566 transcript_region:SL2.40ch06:36648027..36650566+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038560g0006.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|0|0|4|0|223; (*GB) gi|297734149|emb|CBI15396.3| (e_value=3e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G23100.1 (e_value=4e-70) | Symbols: | Protein of unknown function, DUF617 | chr5:7753557-7754390 FORWARD LENGTH=277;; (*ITAG) Solyc03g114390.1.1 (e_value=3e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00004297g0014.1 protein AED:0.08 eAED:0.09 QI:51|0.76|0.83|0.94|0.70|0.77|18|565|938; (*GB) gi|255560015|ref|XP_002521026.1| (e_value=0.0) AP-1 complex subunit gamma-2, putative [Ricinus communis];; (*SWP) sp|Q9ZUI6|AP1G2_ARATH (e_value=0.0) AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2;; (*TAIR) AT1G60070.1 (e_value=0.0) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc04g025870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22707259-22748403 transcript_region:SL2.40ch04:22707259..22748403- go_terms:GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0030276 NbS00004297g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.25|1|0.66|0.75|4|0|503; (*GB) gi|147861933|emb|CAN78769.1| (e_value=0.0) hypothetical protein VITISV_024248 [Vitis vinifera];; (*SWP) sp|Q9LRA7|TPS9_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=1 SV=1;; (*TAIR) AT1G23870.1 (e_value=0.0) | Symbols: ATTPS9, TPS9 | trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867;; (*ITAG) Solyc04g025940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:23182327-23185531 transcript_region:SL2.40ch04:23182327..23185531+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00004297g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|284; (*GB) gi|147861933|emb|CAN78769.1| (e_value=8e-133) hypothetical protein VITISV_024248 [Vitis vinifera];; (*SWP) sp|Q0WUI9|TPS8_ARATH (e_value=1e-130) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 OS=Arabidopsis thaliana GN=TPS8 PE=2 SV=1;; (*TAIR) AT1G70290.1 (e_value=8e-132) | Symbols: ATTPS8, TPS8, ATTPSC | trehalose-6-phosphatase synthase S8 | chr1:26471286-26474078 REVERSE LENGTH=856;; (*ITAG) Solyc04g025940.2.1 (e_value=5e-144) genomic_reference:SL2.40ch04 gene_region:23182327-23185531 transcript_region:SL2.40ch04:23182327..23185531+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00010549g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|0.5|0.33|3|0|335; (*GB) gi|224082564|ref|XP_002306743.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=7e-38) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1;; (*TAIR) AT1G29860.1 (e_value=5e-39) | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein 71 | chr1:10454482-10455652 FORWARD LENGTH=282;; (*ITAG) Solyc12g011200.1.1 (e_value=4e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4045306-4047487 transcript_region:SL2.40ch12:4045306..4047487- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 ***- C9DI18_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010549g0012.1 protein AED:0.21 eAED:0.27 QI:0|1|0.5|1|0.66|1|4|0|234; (*GB) gi|302143542|emb|CBI22103.3| (e_value=3e-47) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g011190.1.1 (e_value=1e-111) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4033785-4039022 transcript_region:SL2.40ch12:4033785..4039022+ functional_description:"Nodule inception protein (Fragment) (AHRD V1 *--- A9DLX6_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00044928g0002.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0|0|2|0|270; (*GB) gi|224091104|ref|XP_002309180.1| (e_value=6e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01840.1 (e_value=1e-23) | Symbols: ATOFP1, OFP1 | ovate family protein 1 | chr5:324552-325364 FORWARD LENGTH=270;; (*ITAG) Solyc09g018200.1.1 (e_value=5e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:13537071-13537826 transcript_region:SL2.40ch09:13537071..13537826- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00001780g0020.1 protein AED:0.29 eAED:0.33 QI:11|0.28|0.37|1|0.42|0.62|8|0|458; (*GB) gi|359493612|ref|XP_003634635.1| (e_value=6e-42) PREDICTED: uncharacterized protein LOC100264164 [Vitis vinifera];; (*TAIR) AT1G53210.1 (e_value=4e-31) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc12g014110.1.1 (e_value=5e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4926721-4930465 transcript_region:SL2.40ch12:4926721..4930465+ go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00001780g0013.1 protein AED:0.33 eAED:0.34 QI:0|0.75|0.66|1|0.75|0.66|9|384|237; (*GB) gi|8131905|gb|AAF73132.1|AF149017_1 (e_value=1e-122) homogentisate 1,2-dioxygenase [Solanum lycopersicum];; (*SWP) sp|Q5VRH4|HGD_ORYSJ (e_value=5e-111) Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1;; (*TAIR) AT5G54080.2 (e_value=1e-111) | Symbols: HGO | homogentisate 1,2-dioxygenase | chr5:21945920-21948070 FORWARD LENGTH=461;; (*ITAG) Solyc12g014100.1.1 (e_value=2e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4918492-4923176 transcript_region:SL2.40ch12:4918492..4923176+ go_terms:GO:0042802 functional_description:"Homogentisate 1 2-dioxygenase (AHRD V1 ***- D7MTP0_ARALY); contains Interpro domain(s) IPR005708 Homogentisate 1,2-dioxygenase "; GO:0042802 NbS00001780g0019.1 protein AED:0.40 eAED:0.49 QI:202|0|0.33|1|0|0.33|3|0|145; (*GB) gi|8131905|gb|AAF73132.1|AF149017_1 (e_value=6e-57) homogentisate 1,2-dioxygenase [Solanum lycopersicum];; (*SWP) sp|Q9ZRA2|HGD_ARATH (e_value=8e-42) Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2;; (*TAIR) AT5G54080.2 (e_value=6e-43) | Symbols: HGO | homogentisate 1,2-dioxygenase | chr5:21945920-21948070 FORWARD LENGTH=461;; (*ITAG) Solyc12g014100.1.1 (e_value=5e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4918492-4923176 transcript_region:SL2.40ch12:4918492..4923176+ go_terms:GO:0042802 functional_description:"Homogentisate 1 2-dioxygenase (AHRD V1 ***- D7MTP0_ARALY); contains Interpro domain(s) IPR005708 Homogentisate 1,2-dioxygenase "; GO:0042802 NbS00001780g0021.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.8|1|0.75|0.6|5|514|410; (*GB) gi|350536789|ref|NP_001234265.1| (e_value=1e-170) uncharacterized protein LOC100505457 [Solanum lycopersicum];; (*ITAG) Solyc12g014120.1.1 (e_value=5e-100) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4931940-4933799 transcript_region:SL2.40ch12:4931940..4933799- functional_description:"Unknown Protein (AHRD V1)"; NbS00041132g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.5|1|1|1|4|449|561; (*GB) gi|377652303|dbj|BAL63045.1| (e_value=0.0) peptidyl serine alpha-galactosyltransferase [Nicotiana tabacum];; (*TAIR) AT3G01720.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:262412-265608 REVERSE LENGTH=802;; (*ITAG) Solyc05g008260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2641082-2648464 transcript_region:SL2.40ch05:2641082..2648464- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q00Y41_OSTTA)"; NbS00024323g0001.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0.33|0.66|1|1|3|0|409; (*GB) gi|255557295|ref|XP_002519678.1| (e_value=4e-175) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=3e-108) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G30080.1 (e_value=1e-164) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:10551231-10553167 REVERSE LENGTH=408;; (*ITAG) Solyc02g070450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34763049-34764796 transcript_region:SL2.40ch02:34763049..34764796- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00014692g0020.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.69|1|0.66|0.61|13|398|484; (*GB) gi|225434716|ref|XP_002281136.1| (e_value=0.0) PREDICTED: cytosolic enolase 3-like [Vitis vinifera];; (*SWP) sp|Q9ZW34|ENO3_ARATH (e_value=0.0) Cytosolic enolase 3 OS=Arabidopsis thaliana GN=ENO3 PE=2 SV=1;; (*TAIR) AT2G29560.1 (e_value=0.0) | Symbols: ENOC | cytosolic enolase | chr2:12646635-12649694 FORWARD LENGTH=475;; (*ITAG) Solyc06g076650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43991430-44000411 transcript_region:SL2.40ch06:43991430..44000411+ go_terms:GO:0004634 functional_description:"Enolase (AHRD V1 ***- A9P9U5_POPTR); contains Interpro domain(s) IPR000941 Enolase "; GO:0004634 NbS00014692g0022.1 protein AED:0.16 eAED:0.16 QI:202|1|1|1|0.75|0.6|5|106|264; (*GB) gi|10946427|gb|AAG24908.1|AF305075_1 (e_value=0.0) proliferating cell nuclear antigen [Nicotiana benthamiana];; (*SWP) sp|O82797|PCNA_TOBAC (e_value=0.0) Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA PE=2 SV=1;; (*TAIR) AT2G29570.1 (e_value=0.0) | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264;; (*ITAG) Solyc06g076660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44000768-44002482 transcript_region:SL2.40ch06:44000768..44002482- go_terms:GO:0032183,GO:0032405 functional_description:"Proliferating cell nuclear antigen (AHRD V1 ***- Q8H0Q1_SOLLC); contains Interpro domain(s) IPR000730 Proliferating cell nuclear antigen, PCNA "; GO:0032183,GO:0032405 NbS00014692g0021.1 protein AED:0.29 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|157; (*GB) gi|225434724|ref|XP_002281319.1| (e_value=1e-49) PREDICTED: uncharacterized protein LOC100255366 [Vitis vinifera];; (*TAIR) AT5G52370.1 (e_value=1e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21260558-21261203 REVERSE LENGTH=142;; (*ITAG) Solyc06g076620.2.1 (e_value=1e-80) genomic_reference:SL2.40ch06 gene_region:43975609-43979126 transcript_region:SL2.40ch06:43975609..43979126- functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 ***- Q9FHC3_ARATH)"; NbS00029218g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.83|0.85|1|0.83|0.71|7|796|560; (*GB) gi|225435708|ref|XP_002283489.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera];; (*SWP) sp|Q2R1M8|RH52C_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1;; (*TAIR) AT3G58570.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21657099-21660352 FORWARD LENGTH=646;; (*ITAG) Solyc01g005960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00029218g0015.1 protein AED:0.66 eAED:0.82 QI:0|0|0|0.5|0|0.5|2|0|64 NbS00029218g0017.1 protein AED:0.34 eAED:0.38 QI:0|0|0|0.66|0|0.66|3|0|190; (*ITAG) Solyc10g047890.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00029218g0018.1 protein AED:0.59 eAED:0.72 QI:0|0|0|0.8|0.25|0|5|0|190 NbS00061487g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|0.66|1|1|3|0|92 NbS00059813g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.4|0.33|6|1866|292; (*GB) gi|1350821|sp|P49314.1|ROC2_NICPL (e_value=5e-145) RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor;; (*SWP) sp|P49314|ROC2_NICPL (e_value=2e-146) 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT2G37220.1 (e_value=2e-90) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15634980-15636331 REVERSE LENGTH=289;; (*ITAG) Solyc10g086150.1.1 (e_value=2e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64403180-64404803 transcript_region:SL2.40ch10:64403180..64404803- go_terms:GO:0043047 functional_description:"Single-stranded DNA binding protein (AHRD V1 **-* Q8W214_SOLTU); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0043047 NbS00059813g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|0.75|0.33|0.25|4|0|430; (*GB) gi|255556994|ref|XP_002519530.1| (e_value=1e-173) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LYW0|Y5325_ARATH (e_value=1e-94) BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1;; (*TAIR) AT5G03250.1 (e_value=9e-96) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:774591-776855 FORWARD LENGTH=592;; (*ITAG) Solyc09g007820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1348239-1351133 transcript_region:SL2.40ch09:1348239..1351133+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00059813g0008.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|0.5|0.66|3|0|61 NbS00059813g0005.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|208 NbS00038191g0003.1 protein AED:0.38 eAED:0.40 QI:0|0.2|0.33|0.83|0.2|0.5|6|716|169 NbS00007298g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|0.8|0.83|6|0|921; (*GB) gi|2648032|emb|CAA04707.1| (e_value=0.0) alpha-glucosidase [Solanum tuberosum];; (*SWP) sp|Q94502|GANAB_DICDI (e_value=0.0) Neutral alpha-glucosidase AB OS=Dictyostelium discoideum GN=modA PE=3 SV=1;; (*TAIR) AT5G63840.1 (e_value=0.0) | Symbols: RSW3, PSL5 | Glycosyl hydrolases family 31 protein | chr5:25545056-25548922 FORWARD LENGTH=921;; (*ITAG) Solyc04g049070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38473202-38481643 transcript_region:SL2.40ch04:38473202..38481643- go_terms:GO:0004558 functional_description:"Alpha glucosidase II (AHRD V1 **** Q70AC6_SOLLC); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00023756g0012.1 protein AED:0.14 eAED:0.14 QI:221|0.82|0.77|1|0.88|0.83|18|0|947; (*GB) gi|255551695|ref|XP_002516893.1| (e_value=0.0) always early, putative [Ricinus communis];; (*SWP) sp|Q6A332|ALY3_ARATH (e_value=0.0) Protein ALWAYS EARLY 3 OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1;; (*TAIR) AT3G21430.2 (e_value=0.0) | Symbols: ATALY3, ALY3 | DNA binding | chr3:7544800-7552841 REVERSE LENGTH=1132;; (*ITAG) Solyc01g067560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68741651-68761610 transcript_region:SL2.40ch01:68741651..68761610- go_terms:GO:0003677 functional_description:"Always early protein 3 (AHRD V1 **-- D7L0S7_ARALY); contains Interpro domain(s) IPR010561 DIRP "; GO:0003677 NbS00023756g0011.1 protein AED:0.36 eAED:0.36 QI:182|0.75|0.6|1|0.75|0.8|5|288|190; (*GB) gi|255551697|ref|XP_002516894.1| (e_value=3e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G18540.2 (e_value=2e-27) | Symbols: | unknown protein; Has 1784 Blast hits to 634 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 1013; Fungi - 200; Plants - 288; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink). | chr5:6153924-6155877 FORWARD LENGTH=166;; (*ITAG) Solyc01g067580.2.1 (e_value=3e-33) genomic_reference:SL2.40ch01 gene_region:68775027-68778067 transcript_region:SL2.40ch01:68775027..68778067- functional_description:"Unknown Protein (AHRD V1)"; NbS00048528g0002.1 protein AED:0.00 eAED:0.00 QI:60|1|1|1|1|1|2|325|821; (*GB) gi|343171942|gb|AEL98675.1| (e_value=5e-14) winged-helix DNA-binding transcription factor family protein, partial [Silene latifolia];; (*ITAG) Solyc11g013580.1.1 (e_value=9e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6773893-6774552 transcript_region:SL2.40ch11:6773893..6774552+ go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634 NbS00005919g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|1|1|3|0|756; (*GB) gi|356524700|ref|XP_003530966.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At1g48480-like isoform 1 [Glycine max];; (*SWP) sp|Q9LP77|Y1848_ARATH (e_value=0.0) Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1;; (*TAIR) AT1G48480.1 (e_value=0.0) | Symbols: RKL1 | receptor-like kinase 1 | chr1:17918475-17920743 FORWARD LENGTH=655;; (*ITAG) Solyc06g068910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39111671-39115135 transcript_region:SL2.40ch06:39111671..39115135+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00005919g0016.1 protein AED:0.17 eAED:0.17 QI:324|0.93|0.81|1|0.8|0.93|16|0|1220; (*GB) gi|255585466|ref|XP_002533426.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=2e-94) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT3G17850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:6109854-6116245 REVERSE LENGTH=1296;; (*ITAG) Solyc06g068920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39115798-39135153 transcript_region:SL2.40ch06:39115798..39135153- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q6L6R7_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00043435g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|186; (*GB) gi|226501744|ref|NP_001149080.1| (e_value=2e-53) anther-specific proline-rich protein APG precursor [Zea mays];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=3e-49) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=2e-50) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071700.2.1 (e_value=4e-109) genomic_reference:SL2.40ch02 gene_region:35644262-35647481 transcript_region:SL2.40ch02:35644262..35647481+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00005472g0001.1 protein AED:0.35 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|111; (*GB) gi|224113161|ref|XP_002316411.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g071710.1.1 (e_value=4e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:41328764-41329111 transcript_region:SL2.40ch03:41328764..41329111- functional_description:"Self-pruning interacting protein 1 (AHRD V1 ***- Q9FR57_SOLLC)"; NbS00031134g0006.1 protein AED:0.06 eAED:0.06 QI:187|1|1|1|0.5|0.33|3|719|880; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=0.0) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=3e-89) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G53350.1 (e_value=1e-70) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc10g047320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:36037309-36040424 transcript_region:SL2.40ch10:36037309..36040424- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00031134g0004.1 protein AED:0.26 eAED:0.36 QI:0|0|0|1|1|1|5|0|389; (*GB) gi|225448417|ref|XP_002271819.1| (e_value=2e-29) PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q9LQ54|DRL12_ARATH (e_value=7e-22) Probable disease resistance protein At1g59620 OS=Arabidopsis thaliana GN=At1g59620 PE=2 SV=3;; (*TAIR) AT1G59620.1 (e_value=6e-25) | Symbols: CW9 | Disease resistance protein (CC-NBS-LRR class) family | chr1:21902627-21905527 FORWARD LENGTH=842;; (*ITAG) Solyc03g005650.1.1 (e_value=3e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:465276-467974 transcript_region:SL2.40ch03:465276..467974- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00031134g0011.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0.33|3|0|237; (*GB) gi|357449695|ref|XP_003595124.1| (e_value=3e-29) Disease resistance RPP8-like protein [Medicago truncatula];; (*SWP) sp|P0C8S1|RP8L2_ARATH (e_value=9e-22) Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1;; (*TAIR) AT1G53350.1 (e_value=6e-23) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc03g005650.1.1 (e_value=6e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:465276-467974 transcript_region:SL2.40ch03:465276..467974- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00031134g0012.1 protein AED:0.34 eAED:0.38 QI:0|0|0|1|0|0|2|0|230; (*ITAG) Solyc03g005640.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:457646-459016 transcript_region:SL2.40ch03:457646..459016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00052706g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.92|0.78|1|0.53|0.71|14|0|952; (*GB) gi|147775817|emb|CAN75924.1| (e_value=0.0) hypothetical protein VITISV_029516 [Vitis vinifera];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=3e-73) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT2G21300.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862;; (*ITAG) Solyc01g110380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88860841-88867416 transcript_region:SL2.40ch01:88860841..88867416+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00052706g0002.1 protein AED:0.63 eAED:0.63 QI:159|0|0.25|0.5|1|1|4|0|71 NbS00008866g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.66|1|1|3|0|499; (*GB) gi|255578108|ref|XP_002529924.1| (e_value=8e-125) Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=4e-52) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=3e-108) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g064820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64029373-64030845 transcript_region:SL2.40ch07:64029373..64030845- go_terms:GO:0004711 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00011539g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|364; (*GB) gi|289976573|gb|ADD21635.1| (e_value=0.0) matrix metalloprotease 1 [Nicotiana benthamiana];; (*SWP) sp|P29136|MEP1_SOYBN (e_value=4e-84) Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT1G24140.1 (e_value=1e-146) | Symbols: | Matrixin family protein | chr1:8536131-8537285 REVERSE LENGTH=384;; (*ITAG) Solyc04g005050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:47516-48619 transcript_region:SL2.40ch04:47516..48619+ go_terms:GO:0004222 functional_description:"Matrix metalloproteinase (AHRD V1 **-- B7TVN4_PINTA); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin "; GO:0004222 NbS00007725g0020.1 protein AED:0.16 eAED:0.20 QI:958|0|0.66|1|0|0.66|3|211|89 NbS00007725g0017.1 protein AED:0.34 eAED:0.34 QI:261|0.85|1|1|0.57|0.87|8|499|261; (*GB) gi|15485610|emb|CAC67407.1| (e_value=3e-142) Clp protease 2 proteolytic subunit [Solanum lycopersicum];; (*SWP) sp|Q9S834|CLPP5_ARATH (e_value=4e-140) ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1;; (*TAIR) AT1G02560.1 (e_value=3e-141) | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP protease 5 | chr1:538000-539805 FORWARD LENGTH=298;; (*ITAG) Solyc01g100520.2.1 (e_value=5e-145) genomic_reference:SL2.40ch01 gene_region:82287668-82292399 transcript_region:SL2.40ch01:82287668..82292399- go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- Q93YH0_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site "; GO:0006508 NbS00007725g0014.1 protein AED:0.31 eAED:0.36 QI:0|0.54|0.33|1|0.81|0.66|12|619|449; (*GB) gi|224123972|ref|XP_002330255.1| (e_value=5e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q68FQ7|RPAP3_RAT (e_value=1e-23) RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1;; (*TAIR) AT1G56440.1 (e_value=1e-56) | Symbols: TPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21138765-21141482 REVERSE LENGTH=476;; (*ITAG) Solyc10g045540.1.1 (e_value=4e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30022962-30037990 transcript_region:SL2.40ch10:30022962..30037990+ go_terms:GO:0005488 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- O42205_XENLA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001796g0101.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|351 NbS00001796g0102.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|130 NbS00043774g0001.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.25|1|1|1|4|0|533; (*GB) gi|146395463|gb|ABQ28669.1| (e_value=0.0) beta-fructofuranosidase [Solanum lycopersicum];; (*TAIR) AT4G34860.2 (e_value=0.0) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00043774g0006.1 protein AED:0.17 eAED:0.17 QI:117|1|0.66|1|1|1|6|550|142; (*GB) gi|168049922|ref|XP_001777410.1| (e_value=1e-82) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q84WL9|AP2S_ARATH (e_value=3e-80) AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2 SV=1;; (*TAIR) AT1G47830.1 (e_value=2e-81) | Symbols: | SNARE-like superfamily protein | chr1:17613346-17614784 REVERSE LENGTH=142;; (*ITAG) Solyc04g081410.2.1 (e_value=2e-85) genomic_reference:SL2.40ch04 gene_region:62993458-62996523 transcript_region:SL2.40ch04:62993458..62996523+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit sigma-1 (AHRD V1 ***- B5X5Q9_SALSA); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0030276 NbS00010310g0007.1 protein AED:0.23 eAED:0.23 QI:294|0.7|0.63|1|0.6|0.54|11|232|350; (*GB) gi|359494044|ref|XP_002279814.2| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=1e-167) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.1 (e_value=2e-169) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=404;; (*ITAG) Solyc07g064670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63938407-63943118 transcript_region:SL2.40ch07:63938407..63943118+ go_terms:GO:0008499 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0008499 NbS00010310g0002.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|1|1|2|0|230; (*GB) gi|222637125|gb|EEE67257.1| (e_value=3e-98) hypothetical protein OsJ_24423 [Oryza sativa Japonica Group];; (*SWP) sp|P0C1M0|ATPG_MAIZE (e_value=1e-77) ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1;; (*TAIR) AT1G15700.1 (e_value=2e-74) | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit protein | chr1:5402629-5403789 REVERSE LENGTH=386;; (*ITAG) Solyc02g080540.1.1 (e_value=4e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ go_terms:GO:0030234 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0030234 NbS00012798g0006.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.2|1|1|5|0|189; (*GB) gi|124359796|gb|ABD33026.2| (e_value=3e-29) Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula];; (*SWP) sp|Q9ZVC9|FRS3_ARATH (e_value=5e-23) Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2;; (*TAIR) AT2G27110.3 (e_value=3e-24) | Symbols: FRS3 | FAR1-related sequence 3 | chr2:11576969-11580259 REVERSE LENGTH=706;; (*ITAG) Solyc01g096850.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:79605422-79610949 transcript_region:SL2.40ch01:79605422..79610949- go_terms:GO:0006310,GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 3 (AHRD V1 ***- FRS3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0006310,GO:0008270 NbS00016190g0006.1 protein AED:0.21 eAED:0.22 QI:0|0.83|0.69|0.92|0.58|0.61|13|0|583; (*GB) gi|255557731|ref|XP_002519895.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|C0LGF4|FEI1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1;; (*TAIR) AT1G31420.1 (e_value=0.0) | Symbols: FEI1 | Leucine-rich repeat protein kinase family protein | chr1:11250360-11253516 FORWARD LENGTH=592;; (*ITAG) Solyc08g074760.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56067158-56077961 transcript_region:SL2.40ch08:56067158..56077961+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002023g0004.1 protein AED:0.26 eAED:0.27 QI:0|1|0.6|1|1|1|5|0|143; (*GB) gi|225444838|ref|XP_002279095.1| (e_value=3e-72) PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like [Vitis vinifera];; (*SWP) sp|Q6DJE4|CPSF5_XENLA (e_value=3e-37) Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1;; (*TAIR) AT4G29820.1 (e_value=2e-71) | Symbols: CFIM-25, ATCFIM-25 | homolog of CFIM-25 | chr4:14596047-14597317 REVERSE LENGTH=222;; (*ITAG) Solyc07g041000.2.1 (e_value=3e-79) genomic_reference:SL2.40ch07 gene_region:48812782-48815986 transcript_region:SL2.40ch07:48812782..48815986- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- C9SP81_VERA1); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00014385g0105.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0.94|1|18|315|832 NbS00014385g0102.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|115 NbS00027452g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|350539681|ref|NP_001233987.1| (e_value=3e-69) pathogenesis-related genes transcriptional activator PTI5 [Solanum lycopersicum];; (*SWP) sp|O04681|PTI5_SOLLC (e_value=9e-71) Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1;; (*TAIR) AT3G23240.1 (e_value=7e-31) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc02g077370.1.1 (e_value=6e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36901000-36901485 transcript_region:SL2.40ch02:36901000..36901485- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 ***- B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00027452g0013.1 protein AED:0.07 eAED:0.22 QI:0|0|0|0.66|1|0.66|3|0|399; (*GB) gi|255568351|ref|XP_002525150.1| (e_value=7e-18) LOB, putative [Ricinus communis];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=2e-16) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=1e-17) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc02g077380.1.1 (e_value=5e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36904300-36906665 transcript_region:SL2.40ch02:36904300..36906665- functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00027452g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|224116378|ref|XP_002331967.1| (e_value=3e-44) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8VY90|EF105_ARATH (e_value=4e-21) Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=3e-22) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc02g077360.1.1 (e_value=1e-77) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:36895267-36896043 transcript_region:SL2.40ch02:36895267..36896043+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00027452g0010.1 protein AED:0.10 eAED:0.10 QI:126|1|1|1|1|1|7|47|197; (*GB) gi|224116372|ref|XP_002331966.1| (e_value=3e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41253|RAC13_GOSHI (e_value=3e-123) Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1;; (*TAIR) AT5G45970.1 (e_value=1e-122) | Symbols: ARAC2, RAC2, ROP7, ATRAC2, ATROP7 | RAC-like 2 | chr5:18643761-18645758 FORWARD LENGTH=201;; (*ITAG) Solyc02g077400.2.1 (e_value=5e-132) genomic_reference:SL2.40ch02 gene_region:36927453-36929460 transcript_region:SL2.40ch02:36927453..36929460- go_terms:GO:0003924 functional_description:"Rac-like GTP binding protein (AHRD V1 **-- Q9S821_PHYPA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00001292g0001.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|392; (*GB) gi|255578331|ref|XP_002530032.1| (e_value=1e-29) hypothetical protein RCOM_0793640 [Ricinus communis];; (*ITAG) Solyc05g013540.1.1 (e_value=3e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:6814092-6815252 transcript_region:SL2.40ch05:6814092..6815252+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor ERF086 (AHRD V1 *-*- D7LXW6_ARALY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00020307g0017.1 protein AED:0.10 eAED:0.10 QI:240|1|1|1|0.16|0.28|7|223|416; (*GB) gi|356503336|ref|XP_003520466.1| (e_value=1e-177) PREDICTED: probable S-acyltransferase At5g05070-like [Glycine max];; (*SWP) sp|Q5PNZ1|ZDH21_ARATH (e_value=6e-157) Probable S-acyltransferase At5g05070 OS=Arabidopsis thaliana GN=At5g05070 PE=2 SV=1;; (*TAIR) AT5G05070.1 (e_value=4e-158) | Symbols: | DHHC-type zinc finger family protein | chr5:1496896-1498441 FORWARD LENGTH=413;; (*ITAG) Solyc10g077060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59293072-59295242 transcript_region:SL2.40ch10:59293072..59295242- go_terms:GO:0008270 functional_description:"Palmitoyltransferase akr1 (AHRD V1 *-*- AKR1_ASPOR); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00020307g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.25|0.75|0.66|0.25|4|0|741; (*GB) gi|75249421|sp|Q93YF5.1|SUVH1_TOBAC (e_value=0.0) RecName: Full=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; AltName: Full=Histone H3-K9 methyltransferase 1; Short=H3-K9-HMTase 1; AltName: Full=NtSet1; AltName: Full=Suppressor of variegation 3-9 homolog protein 1; Short=Su(var)3-9 homolog protein 1;; (*SWP) sp|Q93YF5|SUVH1_TOBAC (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1;; (*TAIR) AT1G73100.1 (e_value=1e-172) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669;; (*ITAG) Solyc10g077070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59300620-59302764 transcript_region:SL2.40ch10:59300620..59302764- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00020307g0015.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|5|335|404; (*GB) gi|225440242|ref|XP_002283892.1| (e_value=0.0) PREDICTED: magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6SJV8|CRD1_GOSHI (e_value=0.0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2;; (*TAIR) AT3G56940.1 (e_value=0.0) | Symbols: CRD1, CHL27, ACSF | dicarboxylate diiron protein, putative (Crd1) | chr3:21076594-21078269 FORWARD LENGTH=409;; (*ITAG) Solyc10g077040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59277929-59280410 transcript_region:SL2.40ch10:59277929..59280410- go_terms:GO:0003677,GO:0048529 functional_description:"Magnesium-protoporphyrin IX monomethyl ester (AHRD V1 **** B9SCF8_RICCO); contains Interpro domain(s) IPR008434 Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase "; GO:0003677,GO:0048529 NbS00020307g0014.1 protein AED:0.21 eAED:0.21 QI:513|0.5|0.57|0.85|0.33|0.42|7|55|570; (*GB) gi|147844780|emb|CAN79042.1| (e_value=9e-176) hypothetical protein VITISV_043755 [Vitis vinifera];; (*SWP) sp|Q9M1K5|ZDH13_ARATH (e_value=1e-161) Probable S-acyltransferase At3g56930 OS=Arabidopsis thaliana GN=At3g56930 PE=2 SV=1;; (*TAIR) AT3G56930.1 (e_value=8e-163) | Symbols: | DHHC-type zinc finger family protein | chr3:21073805-21075873 FORWARD LENGTH=477;; (*ITAG) Solyc10g077050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59281500-59287466 transcript_region:SL2.40ch10:59281500..59287466- go_terms:GO:0008270 functional_description:"Palmitoyltransferase erf2 (AHRD V1 ***- C1GFP3_PARBD); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00028994g0004.1 protein AED:0.07 eAED:0.14 QI:0|0.4|0.16|1|0.2|0.66|6|0|345; (*GB) gi|25815120|emb|CAD29291.1| (e_value=5e-158) alcohol NADP+ oxidoreductase [Solanum tuberosum];; (*SWP) sp|P93257|MTDH_MESCR (e_value=5e-127) Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=3e-112) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011340.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbC23472458g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|254029103|gb|ACT53396.1| (e_value=1e-42) phenylalanine ammonia-lyase [Ageratina adenophora];; (*SWP) sp|P45733|PAL3_TOBAC (e_value=4e-43) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=8e-42) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc10g086180.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00009040g0001.1 protein AED:0.12 eAED:0.12 QI:885|0.90|0.91|1|1|1|12|256|740; (*GB) gi|255540649|ref|XP_002511389.1| (e_value=0.0) Boron transporter, putative [Ricinus communis];; (*SWP) sp|Q9M1P7|BOR2_ARATH (e_value=0.0) Probable boron transporter 2 OS=Arabidopsis thaliana GN=BOR2 PE=2 SV=1;; (*TAIR) AT3G62270.1 (e_value=0.0) | Symbols: | HCO3- transporter family | chr3:23042528-23045633 REVERSE LENGTH=703;; (*ITAG) Solyc06g071500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40411871-40416435 transcript_region:SL2.40ch06:40411871..40416435+ go_terms:GO:0080139 functional_description:"Boron transporter (AHRD V1 **-* A5JUZ5_9ROSI); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0080139 NbS00016251g0001.1 protein AED:0.33 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|213; (*ITAG) Solyc03g043900.1.1 (e_value=6e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:11578703-11579314 transcript_region:SL2.40ch03:11578703..11579314- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 **-- D7LSY0_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00050070g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|90|107; (*GB) gi|225423629|ref|XP_002274983.1| (e_value=2e-38) PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera];; (*SWP) sp|Q9PTX2|CIRBP_LITCT (e_value=6e-15) Cold-inducible RNA-binding protein OS=Lithobates catesbeiana GN=cirbp PE=2 SV=1;; (*TAIR) AT4G20030.1 (e_value=1e-35) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:10846362-10847246 FORWARD LENGTH=152;; (*ITAG) Solyc02g068440.2.1 (e_value=1e-64) genomic_reference:SL2.40ch02 gene_region:32968903-32972526 transcript_region:SL2.40ch02:32968903..32972526- go_terms:GO:0008266 functional_description:"RNA binding protein (AHRD V1 *-** B6U487_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00050070g0008.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.85|0.87|8|304|308; (*GB) gi|356530227|ref|XP_003533684.1| (e_value=9e-139) PREDICTED: choline-phosphate cytidylyltransferase B-like [Glycine max];; (*SWP) sp|Q9Y5K3|PCY1B_HUMAN (e_value=9e-76) Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1;; (*TAIR) AT4G15130.1 (e_value=7e-127) | Symbols: ATCCT2, CCT2 | phosphorylcholine cytidylyltransferase2 | chr4:8637793-8639388 FORWARD LENGTH=304;; (*ITAG) Solyc02g068430.2.1 (e_value=1e-158) genomic_reference:SL2.40ch02 gene_region:32957930-32965109 transcript_region:SL2.40ch02:32957930..32965109- go_terms:GO:0004306,GO:0004105 functional_description:"Choline-phosphate cytidylyltransferase B (AHRD V1 **** B4F7T8_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306,GO:0004105 NbS00008804g0006.1 protein AED:0.28 eAED:0.31 QI:638|0.7|0.81|1|0.8|0.81|11|0|597; (*GB) gi|297737752|emb|CBI26953.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=1e-136) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT1G17980.1 (e_value=0.0) | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:6187742-6191418 REVERSE LENGTH=713;; (*ITAG) Solyc05g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2934132-2942578 transcript_region:SL2.40ch05:2934132..2942578+ go_terms:GO:0005515 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR014492 Poly(A) polymerase "; GO:0005515 NbS00010802g0003.1 protein AED:0.01 eAED:0.01 QI:319|1|1|1|1|1|3|31|842; (*GB) gi|225440714|ref|XP_002275038.1| (e_value=0.0) PREDICTED: chaperone protein ClpB1-like [Vitis vinifera];; (*TAIR) AT3G52490.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc01g007260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1820455-1824077 transcript_region:SL2.40ch01:1820455..1824077- go_terms:GO:0019538 functional_description:"Os04g0416500 protein (Fragment) (AHRD V1 ***- Q0JDA8_ORYSJ); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00010802g0107.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|726 NbS00014695g0014.1 protein AED:0.12 eAED:0.13 QI:0|0|0|0.66|0.5|0.66|3|0|546; (*GB) gi|224131316|ref|XP_002321054.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G02990.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr4:1322158-1323783 FORWARD LENGTH=541;; (*ITAG) Solyc04g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:411094-414033 transcript_region:SL2.40ch04:411094..414033- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M3B1_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00014695g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.25|1|0|0|4|333|196; (*GB) gi|356516996|ref|XP_003527176.1| (e_value=1e-72) PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 3 [Glycine max];; (*TAIR) AT5G57950.1 (e_value=2e-71) | Symbols: | 26S proteasome regulatory subunit, putative | chr5:23460765-23462128 FORWARD LENGTH=227;; (*ITAG) Solyc07g005640.2.1 (e_value=3e-96) genomic_reference:SL2.40ch07 gene_region:514281-518373 transcript_region:SL2.40ch07:514281..518373+ go_terms:GO:0003713,GO:0043425 functional_description:"26S proteasome non-ATPase regulatory subunit 9 (AHRD V1 ***- B6TN44_MAIZE); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0003713,GO:0043425 NbS00014695g0010.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|3|0|125; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-18) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc07g019640.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:12619514-12621171 transcript_region:SL2.40ch07:12619514..12621171- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00036285g0007.1 protein AED:0.01 eAED:0.01 QI:25|1|0.5|1|1|1|2|0|149; (*GB) gi|225444195|ref|XP_002270180.1| (e_value=9e-41) PREDICTED: alpha N-terminal protein methyltransferase 1-like, partial [Vitis vinifera];; (*SWP) sp|Q5PP70|NTM1_ARATH (e_value=4e-36) Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1;; (*TAIR) AT5G44450.1 (e_value=3e-37) | Symbols: | methyltransferases | chr5:17914360-17916017 REVERSE LENGTH=334;; (*ITAG) Solyc02g021700.2.1 (e_value=1e-61) genomic_reference:SL2.40ch02 gene_region:14281494-14294175 transcript_region:SL2.40ch02:14281494..14294175- go_terms:GO:0005515,GO:0008276 functional_description:"Alpha N-terminal protein methyltransferase 1 (AHRD V1 **** NTM1_ARATH); contains Interpro domain(s) IPR008576 Protein of unknown function DUF858, methyltransferase-like "; GO:0005515,GO:0008276 NbS00053010g0005.1 protein AED:0.20 eAED:0.20 QI:272|1|0.9|1|1|1|10|307|529; (*GB) gi|225436397|ref|XP_002272121.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=1e-81) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G22850.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:7633717-7636298 REVERSE LENGTH=493;; (*ITAG) Solyc11g066620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49476659-49482053 transcript_region:SL2.40ch11:49476659..49482053+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M1J9_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00053010g0006.1 protein AED:0.24 eAED:0.24 QI:148|1|0.88|1|0.75|0.55|9|615|198; (*GB) gi|82623439|gb|ABB87134.1| (e_value=3e-99) RNA binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q6GL69|MK67I_XENTR (e_value=3e-26) MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1;; (*TAIR) AT5G04600.1 (e_value=8e-67) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222;; (*ITAG) Solyc06g074720.2.1 (e_value=4e-95) genomic_reference:SL2.40ch06 gene_region:42639045-42643117 transcript_region:SL2.40ch06:42639045..42643117+ go_terms:GO:0005515,GO:0003723 functional_description:"MKI67 FHA domain-interacting nucleolar phosphoprotein-like (AHRD V1 **-- B6THB2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00014897g0007.1 protein AED:0.04 eAED:0.04 QI:316|0.94|0.88|1|0.94|0.88|18|380|1646; (*GB) gi|359481576|ref|XP_002278416.2| (e_value=0.0) PREDICTED: transcription elongation factor SPT6-like [Vitis vinifera];; (*SWP) sp|Q7KZ85|SPT6H_HUMAN (e_value=5e-147) Transcription elongation factor SPT6 OS=Homo sapiens GN=SUPT6H PE=1 SV=2;; (*TAIR) AT1G65440.3 (e_value=0.0) | Symbols: GTB1 | global transcription factor group B1 | chr1:24306988-24314302 REVERSE LENGTH=1454;; (*ITAG) Solyc10g081020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61522744-61532431 transcript_region:SL2.40ch10:61522744..61532431- go_terms:GO:0006357,GO:0003723,GO:0006139 functional_description:"Transcription elongation factor SPT6 (AHRD V1 ***- A8NF94_COPC7); contains Interpro domain(s) IPR017072 Transcription elongation factor Spt6 "; GO:0006357,GO:0003723,GO:0006139 NbS00014897g0008.1 protein AED:0.26 eAED:0.27 QI:189|1|0.75|1|1|1|4|0|488; (*GB) gi|225440197|ref|XP_002283542.1| (e_value=4e-123) PREDICTED: uncharacterized protein LOC100248215 [Vitis vinifera];; (*TAIR) AT3G56590.1 (e_value=5e-98) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:20965105-20967675 FORWARD LENGTH=477;; (*ITAG) Solyc10g081010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61515798-61520273 transcript_region:SL2.40ch10:61515798..61520273- functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 ***- Q5JLQ2_ORYSJ)"; NbS00011203g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.66|0.66|0.5|0.66|3|0|119; (*GB) gi|224085111|ref|XP_002307496.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1ZXK3|LSM3_DICDI (e_value=5e-22) Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1;; (*TAIR) AT1G76860.1 (e_value=1e-26) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98;; (*ITAG) Solyc11g005370.1.1 (e_value=2e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:296498-299974 transcript_region:SL2.40ch11:296498..299974- functional_description:"Small nuclear ribonucleoprotein LsM3 (AHRD V1 **-- D3TPY5_GLOMM); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00022293g0003.1 protein AED:0.00 eAED:0.00 QI:21|1|1|1|1|1|3|5|110; (*GB) gi|255561640|ref|XP_002521830.1| (e_value=1e-50) vacuolar ATP synthase subunit G plant, putative [Ricinus communis];; (*SWP) sp|Q9SP55|VATG_CITLI (e_value=1e-38) V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1;; (*TAIR) AT4G25950.1 (e_value=4e-36) | Symbols: VATG3 | vacuolar ATP synthase G3 | chr4:13173815-13174324 REVERSE LENGTH=108;; (*ITAG) Solyc02g078190.2.1 (e_value=3e-61) genomic_reference:SL2.40ch02 gene_region:37531770-37533050 transcript_region:SL2.40ch02:37531770..37533050- go_terms:GO:0046961 functional_description:"V-type proton ATPase subunit G (AHRD V1 **** VATG_CITLI); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0046961 NbS00004022g0005.1 protein AED:0.29 eAED:0.37 QI:0|0.75|0.55|1|1|1|9|0|354; (*GB) gi|359486525|ref|XP_002264331.2| (e_value=3e-138) PREDICTED: RNA-binding protein Nova-1-like [Vitis vinifera];; (*SWP) sp|Q2PFW9|NOVA1_MACFA (e_value=4e-17) RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2 SV=1;; (*TAIR) AT5G04430.1 (e_value=1e-121) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc11g007940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2168262-2174193 transcript_region:SL2.40ch11:2168262..2174193+ go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 3 (AHRD V1 ***- Q6AY48_RAT); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00045224g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0|0.33|3|0|477; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=2e-59) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q84W80|FBL42_ARATH (e_value=2e-26) F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2;; (*TAIR) AT3G03360.1 (e_value=1e-27) | Symbols: | F-box/RNI-like superfamily protein | chr3:795218-796918 FORWARD LENGTH=481;; (*ITAG) Solyc08g005320.2.1 (e_value=2e-138) genomic_reference:SL2.40ch08 gene_region:246373-250090 transcript_region:SL2.40ch08:246373..250090+ go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR006566 FBD-like "; GO:0004842 NbS00045224g0008.1 protein AED:0.25 eAED:0.25 QI:319|1|0.87|1|0.71|0.87|8|1385|213; (*GB) gi|224138688|ref|XP_002326665.1| (e_value=3e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7W2|NUDT8_ARATH (e_value=9e-44) Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2;; (*TAIR) AT5G47240.1 (e_value=7e-45) | Symbols: atnudt8, NUDT8 | nudix hydrolase homolog 8 | chr5:19183806-19185467 FORWARD LENGTH=369;; (*ITAG) Solyc08g007240.2.1 (e_value=6e-95) genomic_reference:SL2.40ch08 gene_region:1824235-1828359 transcript_region:SL2.40ch08:1824235..1828359+ go_terms:GO:0051287,GO:0047631 functional_description:"Hydrolase NUDIX family protein (AHRD V1 **-- Q2A9R5_BRAOL); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00015211g0014.1 protein AED:0.19 eAED:0.19 QI:532|1|1|1|0.5|0.57|7|519|202; (*GB) gi|225442030|ref|XP_002269039.1| (e_value=1e-63) PREDICTED: dnaJ homolog subfamily B member 7 [Vitis vinifera];; (*SWP) sp|Q0III6|DNJB6_BOVIN (e_value=3e-13) DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1;; (*TAIR) AT3G14200.1 (e_value=6e-51) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4712881-4714361 REVERSE LENGTH=230;; (*ITAG) Solyc03g123560.2.1 (e_value=7e-68) genomic_reference:SL2.40ch03 gene_region:64425770-64428377 transcript_region:SL2.40ch03:64425770..64428377+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- B4FBY1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00015211g0017.1 protein AED:0.26 eAED:0.30 QI:0|0.57|0.6|0.86|0.64|0.6|15|296|511; (*GB) gi|297738451|emb|CBI27652.3| (e_value=6e-136) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67370.1 (e_value=8e-115) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=2e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00015211g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|2|137|150; (*GB) gi|225442022|ref|XP_002268705.1| (e_value=2e-64) PREDICTED: 17.4 kDa class III heat shock protein [Vitis vinifera];; (*SWP) sp|Q9SYG1|HS174_ARATH (e_value=2e-45) 17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1;; (*TAIR) AT1G54050.1 (e_value=2e-46) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20179558-20180122 REVERSE LENGTH=155;; (*ITAG) Solyc03g123540.2.1 (e_value=4e-63) genomic_reference:SL2.40ch03 gene_region:64419768-64420397 transcript_region:SL2.40ch03:64419768..64420397- functional_description:"class II heat shock protein (AHRD V1 ***- B6U175_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00015211g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.25|1|1|1|4|0|306; (*GB) gi|359482879|ref|XP_002271332.2| (e_value=2e-109) PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Vitis vinifera];; (*SWP) sp|Q54I81|EI2BA_DICDI (e_value=6e-21) Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1;; (*TAIR) AT1G72340.1 (e_value=6e-102) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr1:27236898-27238482 FORWARD LENGTH=382;; (*ITAG) Solyc12g049580.1.1 (e_value=1e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46664001-46668223 transcript_region:SL2.40ch12:46664001..46668223- go_terms:GO:0044237 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- MTNA_CLOTH); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0044237 NbS00031554g0005.1 protein AED:0.12 eAED:0.20 QI:0|0.5|0|1|1|0.66|3|0|216; (*GB) gi|365818557|gb|AEX00367.1| (e_value=7e-61) IAA29 [Solanum lycopersicum];; (*SWP) sp|Q93WC4|IAA29_ARATH (e_value=9e-19) Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2;; (*TAIR) AT4G32280.1 (e_value=7e-20) | Symbols: IAA29 | indole-3-acetic acid inducible 29 | chr4:15583479-15584628 FORWARD LENGTH=251;; (*ITAG) Solyc08g021820.2.1 (e_value=1e-63) genomic_reference:SL2.40ch08 gene_region:9926828-9928295 transcript_region:SL2.40ch08:9926828..9928295- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00034324g0005.1 protein AED:0.21 eAED:0.32 QI:57|0|0|0.8|0.25|0.2|5|0|238; (*GB) gi|296082001|emb|CBI21006.3| (e_value=8e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=1e-29) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.2 (e_value=7e-25) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16041864 REVERSE LENGTH=359;; (*ITAG) Solyc09g065740.1.1 (e_value=5e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59619493-59622604 transcript_region:SL2.40ch09:59619493..59622604+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00013839g0010.1 protein AED:0.07 eAED:0.08 QI:21|0.75|0.4|1|0.75|0.8|5|0|395; (*GB) gi|225444665|ref|XP_002277239.1| (e_value=0.0) PREDICTED: probable polygalacturonase [Vitis vinifera];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=6e-86) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G42950.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:15015383-15017800 FORWARD LENGTH=484;; (*ITAG) Solyc07g042160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52473909-52486990 transcript_region:SL2.40ch07:52473909..52486990+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00013839g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|506; (*GB) gi|255571417|ref|XP_002526656.1| (e_value=0.0) importin beta-1, putative [Ricinus communis];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=1e-106) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT3G08943.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00013839g0002.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|166; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=4e-79) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q14974|IMB1_HUMAN (e_value=3e-29) Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2;; (*TAIR) AT3G08947.1 (e_value=4e-75) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=7e-84) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00001827g0004.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|350535509|ref|NP_001233942.1| (e_value=1e-150) ureF protein [Solanum lycopersicum];; (*SWP) sp|B7K911|UREF_CYAP7 (e_value=1e-15) Urease accessory protein UreF OS=Cyanothece sp. (strain PCC 7424) GN=ureF PE=3 SV=1;; (*TAIR) AT1G21840.1 (e_value=1e-115) | Symbols: UREF | urease accessory protein F | chr1:7666859-7667581 FORWARD LENGTH=240;; (*ITAG) Solyc03g031430.1.1 (e_value=2e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:8265682-8266410 transcript_region:SL2.40ch03:8265682..8266410+ go_terms:GO:0006807 functional_description:"Urease accessory protein UreF (AHRD V1 ***- Q8H1P4_SOYBN); contains Interpro domain(s) IPR002639 Urease accessory protein UreF "; GO:0006807 NbS00001827g0006.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.33|1|1|1|3|218|336; (*GB) gi|255539599|ref|XP_002510864.1| (e_value=7e-137) Peroxidase 66 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LT91|PER66_ARATH (e_value=1e-128) Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1;; (*TAIR) AT5G51890.1 (e_value=7e-130) | Symbols: | Peroxidase superfamily protein | chr5:21091163-21092335 REVERSE LENGTH=322;; (*ITAG) Solyc03g006810.2.1 (e_value=5e-154) genomic_reference:SL2.40ch03 gene_region:1320783-1322165 transcript_region:SL2.40ch03:1320783..1322165+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** D7MRK0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00001827g0003.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|454; (*GB) gi|225469324|ref|XP_002267983.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248586 [Vitis vinifera];; (*SWP) sp|Q16P90|MOCO3_AEDAE (e_value=4e-12) Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1;; (*TAIR) AT5G51920.1 (e_value=3e-124) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:21097202-21098914 REVERSE LENGTH=570;; (*ITAG) Solyc03g031420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8258407-8260182 transcript_region:SL2.40ch03:8258407..8260182+ go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 ***- C0S2Y3_PARBP); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00001827g0005.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|350539964|ref|NP_001233826.1| (e_value=3e-135) TCP transcription factor 21 [Solanum lycopersicum];; (*SWP) sp|Q9LT89|TCP19_ARATH (e_value=2e-64) Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1;; (*TAIR) AT5G51910.2 (e_value=1e-65) | Symbols: | TCP family transcription factor | chr5:21094704-21095585 REVERSE LENGTH=293;; (*ITAG) Solyc03g006800.1.1 (e_value=6e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1316456-1317436 transcript_region:SL2.40ch03:1316456..1317436+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00001827g0002.1 protein AED:0.35 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|224134691|ref|XP_002321884.1| (e_value=7e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51920.1 (e_value=4e-45) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:21097202-21098914 REVERSE LENGTH=570;; (*ITAG) Solyc03g031420.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8258407-8260182 transcript_region:SL2.40ch03:8258407..8260182+ go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 ***- C0S2Y3_PARBP); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00001827g0014.1 protein AED:0.45 eAED:0.52 QI:0|0|0|0.6|1|1|5|0|174; (*ITAG) Solyc02g043820.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005925g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.14|0.57|0.5|0.57|7|0|402; (*GB) gi|225439558|ref|XP_002264808.1| (e_value=5e-40) PREDICTED: uncharacterized protein LOC100267149 [Vitis vinifera];; (*TAIR) AT3G11000.1 (e_value=3e-35) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:3448442-3450283 FORWARD LENGTH=488;; (*ITAG) Solyc06g050610.1.1 (e_value=2e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:29813695-29815506 transcript_region:SL2.40ch06:29813695..29815506- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00005925g0010.1 protein AED:0.29 eAED:0.29 QI:29|0.87|0.66|0.88|0.75|0.88|9|0|286; (*GB) gi|359486366|ref|XP_002278151.2| (e_value=3e-92) PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase-like [Vitis vinifera];; (*TAIR) AT3G56130.1 (e_value=6e-63) | Symbols: | biotin/lipoyl attachment domain-containing protein | chr3:20826852-20829007 FORWARD LENGTH=281;; (*ITAG) Solyc06g050590.2.1 (e_value=4e-141) genomic_reference:SL2.40ch06 gene_region:29782773-29788444 transcript_region:SL2.40ch06:29782773..29788444- go_terms:GO:0005488 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-*- D3PS72_MEIRD); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005488 NbS00005925g0111.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|812 NbS00005925g0103.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|220 NbS00005925g0113.1 protein AED:0.10 eAED:0.10 QI:436|1|1|1|1|1|5|401|543 NbS00005925g0115.1 protein AED:0.09 eAED:0.49 QI:0|0|0|1|0|0|2|0|162 NbS00005925g0201.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|481 NbS00005925g0203.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.33|1|1|3|0|67 NbS00029733g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|131 NbS00001734g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.84|0.85|1|0.84|0.85|14|279|376; (*GB) gi|147821410|emb|CAN63505.1| (e_value=9e-161) hypothetical protein VITISV_011680 [Vitis vinifera];; (*SWP) sp|P83291|NCB5R_ARATH (e_value=4e-150) NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=At5g20080 PE=1 SV=2;; (*TAIR) AT5G20080.1 (e_value=3e-151) | Symbols: | FAD/NAD(P)-binding oxidoreductase | chr5:6782708-6786360 FORWARD LENGTH=328;; (*ITAG) Solyc05g018520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22136142-22152397 transcript_region:SL2.40ch05:22136142..22152397- go_terms:GO:0004128 functional_description:"NADH-cytochrome b5 reductase-like protein (AHRD V1 **** B6TCK3_MAIZE); contains Interpro domain(s) IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase "; GO:0004128 NbS00030640g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|533; (*GB) gi|323149965|gb|ADX33332.1| (e_value=0.0) cinnamate-4-hydroxylase 1 [Petunia x hybrida];; (*SWP) sp|Q42797|TCMO_SOYBN (e_value=0.0) Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=0.0) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00016421g0013.1 protein AED:0.18 eAED:0.19 QI:39|0.57|0.5|1|0.85|0.75|8|0|1111; (*GB) gi|225428063|ref|XP_002277945.1| (e_value=0.0) PREDICTED: probable ubiquitin-conjugating enzyme E2 23-like [Vitis vinifera];; (*SWP) sp|Q9ZVX1|UBC23_ARATH (e_value=0.0) Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1;; (*TAIR) AT2G16920.1 (e_value=0.0) | Symbols: UBC23, PFU2 | ubiquitin-conjugating enzyme 23 | chr2:7334559-7338827 REVERSE LENGTH=1102;; (*ITAG) Solyc01g111680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89632344-89639237 transcript_region:SL2.40ch01:89632344..89639237- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 22 (AHRD V1 ***- D7L888_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00016421g0012.1 protein AED:0.18 eAED:0.27 QI:1181|0.85|0.66|1|0.85|0.73|15|0|591; (*GB) gi|225428067|ref|XP_002279715.1| (e_value=0.0) PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera];; (*SWP) sp|Q06364|PSMD3_DAUCA (e_value=0.0) Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2;; (*TAIR) AT1G20200.1 (e_value=0.0) | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488;; (*ITAG) Solyc01g111700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89647160-89650036 transcript_region:SL2.40ch01:89647160..89650036- go_terms:GO:0005515 functional_description:"26S proteasome non-ATPase regulatory subunit 3 (AHRD V1 ***- B6TAE2_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515 NbS00016421g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.71|0.85|0.5|0.57|7|282|203; (*GB) gi|225428065|ref|XP_002279626.1| (e_value=1e-92) PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera];; (*SWP) sp|Q54CU7|TPC2L_DICDI (e_value=2e-42) Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1;; (*TAIR) AT2G20930.1 (e_value=5e-87) | Symbols: | SNARE-like superfamily protein | chr2:9000790-9001656 REVERSE LENGTH=140;; (*ITAG) Solyc01g111690.2.1 (e_value=2e-97) genomic_reference:SL2.40ch01 gene_region:89642932-89646885 transcript_region:SL2.40ch01:89642932..89646885+ go_terms:GO:0006810,GO:0005622 functional_description:"Trafficking protein particle complex subunit 2-like protein (AHRD V1 ***- D0N1W2_PHYIN); contains Interpro domain(s) IPR006722 Sedlin "; GO:0006810,GO:0005622 NbS00005103g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|578; (*GB) gi|255542798|ref|XP_002512462.1| (e_value=0.0) Pectinesterase PPE8B precursor, putative [Ricinus communis];; (*SWP) sp|Q9M9W7|PME22_ARATH (e_value=0.0) Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1;; (*TAIR) AT3G05620.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=543;; (*ITAG) Solyc01g099960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81815430-81817654 transcript_region:SL2.40ch01:81815430..81817654- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RFE3_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00005103g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.77|1|0.62|0.66|9|280|631; (*GB) gi|224123030|ref|XP_002318976.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=5e-116) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1;; (*TAIR) AT5G27920.1 (e_value=0.0) | Symbols: | F-box family protein | chr5:9942063-9944507 REVERSE LENGTH=642;; (*ITAG) Solyc01g099970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81818175-81824371 transcript_region:SL2.40ch01:81818175..81824371- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00017158g0009.1 protein AED:0.17 eAED:0.20 QI:7|0.71|0.59|1|0.61|0.54|22|344|872; (*GB) gi|225443168|ref|XP_002264313.1| (e_value=0.0) PREDICTED: ABC transporter C family member 13-like [Vitis vinifera];; (*SWP) sp|Q9SKX0|AB13C_ARATH (e_value=0.0) ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3;; (*TAIR) AT2G07680.1 (e_value=0.0) | Symbols: ATMRP11, MRP11, ABCC13 | multidrug resistance-associated protein 11 | chr2:3514774-3522491 FORWARD LENGTH=1404;; (*ITAG) Solyc03g117540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60717946-60738473 transcript_region:SL2.40ch03:60717946..60738473+ go_terms:GO:0008559 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9I191_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0008559 NbS00017158g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|327; (*GB) gi|225442902|ref|XP_002263600.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266426 [Vitis vinifera];; (*TAIR) AT1G52530.1 (e_value=3e-173) | Symbols: | CONTAINS InterPro DOMAIN/s: Hus1-like protein (InterPro:IPR007150); Has 129 Blast hits to 128 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 57; Fungi - 10; Plants - 47; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:19569045-19570004 FORWARD LENGTH=319;; (*ITAG) Solyc03g117530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60714421-60715329 transcript_region:SL2.40ch03:60714421..60715329+ functional_description:"Checkpoint protein HUS1 (AHRD V1 ***- HUS1_HUMAN); contains Interpro domain(s) IPR007150 Hus1-like protein "; NbS00018398g0003.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.66|0.5|0.66|3|0|215; (*GB) gi|26224736|gb|AAN76362.1| (e_value=2e-31) serpin-like protein, partial [Citrus x paradisi];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=2e-24) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT2G35580.1 (e_value=6e-26) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr2:14933828-14935482 REVERSE LENGTH=374;; (*ITAG) Solyc04g079440.2.1 (e_value=7e-36) genomic_reference:SL2.40ch04 gene_region:61536285-61539279 transcript_region:SL2.40ch04:61536285..61539279- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00012751g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.25|0.5|1|1|4|0|91; (*GB) gi|224063132|ref|XP_002301006.1| (e_value=4e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CA23|UFM1_ARATH (e_value=5e-50) Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1;; (*TAIR) AT1G77710.1 (e_value=4e-51) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206750-29207895 FORWARD LENGTH=93;; (*ITAG) Solyc08g075780.2.1 (e_value=3e-52) genomic_reference:SL2.40ch08 gene_region:57060353-57063186 transcript_region:SL2.40ch08:57060353..57063186+ go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier 1 (AHRD V1 ***- B6SXA8_MAIZE); contains Interpro domain(s) IPR005375 Ubiquitin-like, Ufm1 "; GO:0005515 NbS00026095g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|4|536|202; (*GB) gi|76573299|gb|ABA46754.1| (e_value=3e-134) unknown [Solanum tuberosum];; (*SWP) sp|Q95RC0|NAA30_DROME (e_value=1e-55) N-alpha-acetyltransferase 30 OS=Drosophila melanogaster GN=CG11412 PE=2 SV=1;; (*TAIR) AT2G38130.2 (e_value=5e-99) | Symbols: ATMAK3 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:15978639-15980145 REVERSE LENGTH=190;; (*ITAG) Solyc09g091980.2.1 (e_value=5e-135) genomic_reference:SL2.40ch09 gene_region:66517949-66522458 transcript_region:SL2.40ch09:66517949..66522458- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 30, NatC catalytic subunit (AHRD V1 **** NAA30_DROME); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00009114g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|148372140|gb|ABQ63001.1| (e_value=6e-81) WIN1-like protein [Populus trichocarpa];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=2e-19) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=2e-20) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc02g088310.1.1 (e_value=6e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45026638-45028664 transcript_region:SL2.40ch02:45026638..45028664+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2/ERF domain-containing transcription factor (AHRD V1 ***- B9IK18_POPTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00009114g0008.1 protein AED:0.19 eAED:0.19 QI:90|0.85|0.87|1|0.57|0.75|8|72|367; (*GB) gi|357487309|ref|XP_003613942.1| (e_value=4e-116) hypothetical protein MTR_5g042910 [Medicago truncatula];; (*TAIR) AT3G29180.2 (e_value=4e-104) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc02g088320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45032710-45036500 transcript_region:SL2.40ch02:45032710..45036500+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00009114g0013.1 protein AED:0.11 eAED:0.11 QI:130|0.9|0.90|1|0.7|0.72|11|421|478; (*GB) gi|42539899|gb|AAS18877.1| (e_value=0.0) SNF1-related protein kinase alpha subunit [Nicotiana attenuata];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.2 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-34143 REVERSE LENGTH=535;; (*ITAG) Solyc02g067030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31839840-31851609 transcript_region:SL2.40ch02:31839840..31851609- go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase catalytic subunit alpha-2 (AHRD V1 **** D1LWW2_SACKO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00009114g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|0.33|1|0.5|0.66|3|0|123 NbS00045199g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|225457534|ref|XP_002270383.1| (e_value=5e-174) PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=3e-95) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G68470.1 (e_value=2e-157) | Symbols: | Exostosin family protein | chr1:25676545-25678267 REVERSE LENGTH=455;; (*ITAG) Solyc02g014140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:6489569-6490966 transcript_region:SL2.40ch02:6489569..6490966+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbC24381833g0002.1 protein AED:0.04 eAED:0.40 QI:92|0|0|1|1|0.5|2|0|52; (*GB) gi|225441621|ref|XP_002281952.1| (e_value=3e-18) PREDICTED: uncharacterized protein LOC100267624 [Vitis vinifera];; (*TAIR) AT3G03940.1 (e_value=7e-21) | Symbols: | Protein kinase family protein | chr3:1014412-1018244 REVERSE LENGTH=701;; (*ITAG) Solyc10g080700.1.1 (e_value=5e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00030470g0013.1 protein AED:0.09 eAED:0.09 QI:205|0.33|0.5|1|0.33|0.25|4|0|634; (*GB) gi|255537079|ref|XP_002509606.1| (e_value=0.0) leucine rich repeat receptor kinase, putative [Ricinus communis];; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=2e-48) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT4G22730.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:11941384-11943696 FORWARD LENGTH=688;; (*ITAG) Solyc08g079460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60147887-60152431 transcript_region:SL2.40ch08:60147887..60152431+ go_terms:GO:0004702 functional_description:"Receptor like kinase, RLK"; GO:0004702 NbS00030470g0015.1 protein AED:0.37 eAED:0.37 QI:77|1|0.87|1|1|0.87|8|0|380; (*GB) gi|296082853|emb|CBI22154.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PC62|SPG21_DANRE (e_value=4e-73) Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1;; (*TAIR) AT4G12230.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:7284645-7287348 FORWARD LENGTH=392;; (*ITAG) Solyc08g079450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60133637-60141950 transcript_region:SL2.40ch08:60133637..60141950+ go_terms:GO:0042609 functional_description:"Maspardin (AHRD V1 ***- B6TRT5_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0042609 NbS00030470g0011.1 protein AED:0.09 eAED:0.09 QI:287|1|1|1|0.8|0.66|6|255|393; (*GB) gi|356497167|ref|XP_003517434.1| (e_value=1e-163) PREDICTED: LOW QUALITY PROTEIN: putative transferase CAF17 homolog, mitochondrial-like [Glycine max];; (*SWP) sp|Q4P7A4|CAF17_USTMA (e_value=8e-42) Putative transferase CAF17, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CAF17 PE=3 SV=1;; (*TAIR) AT4G12130.1 (e_value=4e-163) | Symbols: | Glycine cleavage T-protein family | chr4:7263640-7265425 FORWARD LENGTH=393;; (*ITAG) Solyc08g079470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60152858-60158284 transcript_region:SL2.40ch08:60152858..60158284- go_terms:GO:0005737 functional_description:"tRNA-modifying protein ygfZ (AHRD V1 *-*- YGFZ_SALTY); contains Interpro domain(s) IPR017703 Folate-binding, YgfZ "; GO:0005737 NbS00000181g0015.1 protein AED:0.28 eAED:0.28 QI:416|0.66|0.5|0.75|1|1|4|0|171; (*GB) gi|225427140|ref|XP_002278687.1| (e_value=6e-33) PREDICTED: uncharacterized protein LOC100252266 [Vitis vinifera];; (*TAIR) AT5G46850.3 (e_value=2e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). | chr5:19010852-19012010 FORWARD LENGTH=299;; (*ITAG) Solyc08g076570.2.1 (e_value=5e-53) genomic_reference:SL2.40ch08 gene_region:57702045-57704680 transcript_region:SL2.40ch08:57702045..57704680- go_terms:GO:0005789 functional_description:"Phosphatidylinositol-glycan biosynthesis class X protein (AHRD V1 **-- PIGX_HUMAN); contains Interpro domain(s) IPR013233 PIG-X/PBN1 "; GO:0005789 NbS00000181g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.57|1|0.5|0.42|7|11|297; (*GB) gi|78191096|gb|ABB29875.1| (e_value=6e-87) respiratory burst oxidase protein [Nicotiana tabacum];; (*SWP) sp|Q9FJD6|RBOHH_ARATH (e_value=3e-65) Putative respiratory burst oxidase homolog protein H OS=Arabidopsis thaliana GN=RBOHH PE=3 SV=1;; (*TAIR) AT5G60010.1 (e_value=2e-66) | Symbols: | ferric reductase-like transmembrane component family protein | chr5:24160456-24164755 FORWARD LENGTH=886;; (*ITAG) Solyc11g072800.1.1 (e_value=2e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53080287-53084638 transcript_region:SL2.40ch11:53080287..53084638- go_terms:GO:0016020,GO:0016021,GO:0005509,GO:0055114 functional_description:"NADPH oxidase (AHRD V1 ***- Q8W4X7_TOBAC); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016020,GO:0016021,GO:0005509,GO:0055114 NbS00000181g0003.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|3|0|526; (*GB) gi|225447917|ref|XP_002267176.1| (e_value=8e-59) PREDICTED: mitogen-activated protein kinase kinase kinase 2 [Vitis vinifera];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=4e-34) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=5e-51) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc08g076490.2.1 (e_value=2e-154) genomic_reference:SL2.40ch08 gene_region:57660690-57663299 transcript_region:SL2.40ch08:57660690..57663299- go_terms:GO:0042803 functional_description:"Protein kinase-like protein (AHRD V1 ***- Q9SND6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00042123g0001.1 protein AED:0.03 eAED:0.03 QI:155|1|1|1|0.5|0.33|3|507|1082; (*GB) gi|255572272|ref|XP_002527075.1| (e_value=0.0) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-172) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=8e-174) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g068820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001254g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|1|1|1|4|330|431; (*GB) gi|356556382|ref|XP_003546505.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100807621 [Glycine max];; (*TAIR) AT3G16200.1 (e_value=0.0) | Symbols: | unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:5491619-5493605 REVERSE LENGTH=456;; (*ITAG) Solyc03g120490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62926123-62930230 transcript_region:SL2.40ch03:62926123..62930230+ functional_description:"Genomic DNA chromosome 3 P1 clone MYA6 (AHRD V1 ***- Q9LU25_ARATH)"; NbS00001254g0008.1 protein AED:0.13 eAED:0.40 QI:0|0|0|1|0|0|3|0|125 NbS00013245g0007.1 protein AED:0.10 eAED:0.10 QI:374|1|0.90|1|0.9|0.81|11|0|1214; (*GB) gi|224128678|ref|XP_002329063.1| (e_value=0.0) aminophospholipid ATPase [Populus trichocarpa];; (*SWP) sp|Q9LNQ4|ALA4_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 4 OS=Arabidopsis thaliana GN=ALA4 PE=1 SV=2;; (*TAIR) AT1G17500.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:6018757-6023201 FORWARD LENGTH=1216;; (*ITAG) Solyc03g121810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63905200-63910005 transcript_region:SL2.40ch03:63905200..63910005+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 **** C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00013245g0006.1 protein AED:0.32 eAED:0.32 QI:122|1|0.66|1|1|1|6|260|181; (*GB) gi|350534688|ref|NP_001233898.1| (e_value=2e-112) nonclathrin coat protein zeta1-COP [Solanum lycopersicum];; (*SWP) sp|Q940S5|COPZ1_ARATH (e_value=2e-89) Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1;; (*TAIR) AT1G60970.1 (e_value=1e-90) | Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177;; (*ITAG) Solyc03g121800.2.1 (e_value=4e-115) genomic_reference:SL2.40ch03 gene_region:63900340-63903757 transcript_region:SL2.40ch03:63900340..63903757+ go_terms:GO:0030117,GO:0006810 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- B6UH71_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0030117,GO:0006810 NbS00027842g0008.1 protein AED:0.07 eAED:0.12 QI:0|0.25|0|0.8|0.25|0.4|5|0|488; (*GB) gi|255545882|ref|XP_002514001.1| (e_value=4e-174) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G33590.1 (e_value=4e-116) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33600.1); Has 126 Blast hits to 126 proteins in 35 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 21; Plants - 62; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr4:16142585-16143985 REVERSE LENGTH=466;; (*ITAG) Solyc04g074930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58420420-58422122 transcript_region:SL2.40ch04:58420420..58422122+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027842g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|359492001|ref|XP_002285053.2| (e_value=2e-29) PREDICTED: F-box protein GID2-like [Vitis vinifera];; (*SWP) sp|Q9STX3|GID2_ARATH (e_value=3e-25) F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1;; (*TAIR) AT4G24210.1 (e_value=2e-26) | Symbols: SLY1 | F-box family protein | chr4:12563658-12564113 FORWARD LENGTH=151;; (*ITAG) Solyc04g078390.1.1 (e_value=3e-60) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:60724432-60725082 transcript_region:SL2.40ch04:60724432..60725082+ functional_description:"F-box protein (AHRD V1 *-*- A3RJX0_GOSHI); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021573g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|316; (*GB) gi|148540329|gb|ABQ85893.1| (e_value=3e-70) ERF transcription factor [Pisum sativum];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=2e-27) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=1e-28) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc10g078610.1.1 (e_value=9e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59698868-59699743 transcript_region:SL2.40ch10:59698868..59699743- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1B (AHRD V1 *-*- ERF92_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00021573g0008.1 protein AED:0.18 eAED:0.18 QI:122|1|1|1|1|1|4|451|322; (*GB) gi|365222922|gb|AEW69813.1| (e_value=6e-138) Hop-interacting protein THI113 [Solanum lycopersicum];; (*TAIR) AT2G39050.1 (e_value=4e-72) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:16303427-16305336 FORWARD LENGTH=317;; (*ITAG) Solyc01g010750.2.1 (e_value=5e-141) genomic_reference:SL2.40ch01 gene_region:5783031-5788195 transcript_region:SL2.40ch01:5783031..5788195- functional_description:"Stress responsive protein (AHRD V1 *--- B6STP1_MAIZE); contains Interpro domain(s) IPR008997 Ricin B-related lectin "; NbS00021573g0006.1 protein AED:0.22 eAED:0.63 QI:88|1|0.5|1|0|0|2|0|439; (*GB) gi|133711808|gb|ABO36626.1| (e_value=3e-39) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-17) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=2e-18) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc10g079220.2.1 (e_value=5e-42) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00021573g0029.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.8|0.25|0.2|5|0|590; (*GB) gi|359480504|ref|XP_002262746.2| (e_value=9e-63) PREDICTED: uncharacterized protein LOC100249503 [Vitis vinifera];; (*TAIR) AT4G40020.1 (e_value=1e-17) | Symbols: | Myosin heavy chain-related protein | chr4:18553453-18555300 REVERSE LENGTH=615;; (*ITAG) Solyc07g009520.1.1 (e_value=4e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:4664560-4666330 transcript_region:SL2.40ch07:4664560..4666330+ functional_description:"Myosin-like protein (AHRD V1 *-*- Q8W3G8_ORYSA)"; NbS00021573g0018.1 protein AED:0.44 eAED:0.46 QI:451|0.5|0.8|1|0.5|0.4|5|0|141; (*GB) gi|359477912|ref|XP_002270244.2| (e_value=7e-29) PREDICTED: RNA-binding protein 40-like [Vitis vinifera];; (*TAIR) AT1G09230.1 (e_value=4e-28) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2979637-2982563 REVERSE LENGTH=442;; (*ITAG) Solyc01g110820.2.1 (e_value=2e-53) genomic_reference:SL2.40ch01 gene_region:89111597-89117577 transcript_region:SL2.40ch01:89111597..89117577- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 40 (AHRD V1 *-*- RBM40_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00021573g0003.1 protein AED:0.59 eAED:0.59 QI:0|-1|0|1|-1|1|1|0|77 NbS00021573g0028.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|102 NbS00021573g0027.1 protein AED:0.22 eAED:0.72 QI:0|0|0|1|0|0|2|0|140 NbS00024916g0001.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.16|1|1|6|0|156 NbS00039764g0002.1 protein AED:0.15 eAED:0.17 QI:0|0.5|0.44|1|1|1|9|0|487; (*GB) gi|255571976|ref|XP_002526929.1| (e_value=2e-90) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8IYW5|RN168_HUMAN (e_value=6e-12) E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1;; (*TAIR) AT3G27330.1 (e_value=2e-44) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:10116950-10120516 REVERSE LENGTH=913;; (*ITAG) Solyc02g067970.2.1 (e_value=5e-127) genomic_reference:SL2.40ch02 gene_region:32614978-32617264 transcript_region:SL2.40ch02:32614978..32617264- go_terms:GO:0008270 functional_description:"Tripartite motif-containing 25 (AHRD V1 *--- Q6P7B3_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00039764g0012.1 protein AED:0.64 eAED:0.53 QI:33|0.28|0|0.75|0.57|0.75|8|0|396; (*GB) gi|357504249|ref|XP_003622413.1| (e_value=1e-65) GPI inositol-deacylase [Medicago truncatula];; (*TAIR) AT3G27325.1 (e_value=1e-51) | Symbols: | hydrolases, acting on ester bonds | chr3:10096224-10102087 FORWARD LENGTH=1085;; (*ITAG) Solyc02g093770.2.1 (e_value=2e-71) genomic_reference:SL2.40ch02 gene_region:49064946-49077850 transcript_region:SL2.40ch02:49064946..49077850- go_terms:GO:0031227 functional_description:"GPI inositol-deacylase (AHRD V1 *-*- C5FP83_NANOT); contains Interpro domain(s) IPR012908 PGAP1-like "; GO:0031227 NbS00039764g0011.1 protein AED:0.07 eAED:0.08 QI:0|0.33|0|1|0.66|0.5|4|0|519; (*GB) gi|225452208|ref|XP_002270991.1| (e_value=0.0) PREDICTED: UPF0392 protein RCOM_0530710-like [Vitis vinifera];; (*SWP) sp|B9SLR1|Y231_RICCO (e_value=0.0) UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0530710 PE=3 SV=1;; (*TAIR) AT5G40720.1 (e_value=2e-178) | Symbols: | Domain of unknown function (DUF23) | chr5:16298063-16299893 FORWARD LENGTH=583;; (*ITAG) Solyc02g093750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49060046-49062184 transcript_region:SL2.40ch02:49060046..49062184+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00036615g0005.1 protein AED:0.14 eAED:0.14 QI:293|0.2|0.16|1|0|0|6|0|543; (*GB) gi|224100445|ref|XP_002311879.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc04g005790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:500464-507053 transcript_region:SL2.40ch04:500464..507053- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00016036g0005.1 protein AED:0.17 eAED:0.17 QI:177|1|0.8|1|0.75|0.6|5|0|619; (*GB) gi|133711805|gb|ABO36623.1| (e_value=0.0) putative RNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q5SNN4|C3H40_ORYSJ (e_value=0.0) Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa subsp. japonica GN=Os06g0170500 PE=2 SV=1;; (*TAIR) AT1G07360.1 (e_value=0.0) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481;; (*ITAG) Solyc04g017710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7786866-7792144 transcript_region:SL2.40ch04:7786866..7792144+ go_terms:GO:0048306 functional_description:"Pre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0048306 NbS00023083g0003.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|225452847|ref|XP_002283702.1| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100259485 [Vitis vinifera];; (*SWP) sp|P0C8Q9|Y5902_ARATH (e_value=2e-14) Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3;; (*TAIR) AT5G15260.1 (e_value=7e-34) | Symbols: | Ribosomal protein L34e superfamily protein | chr5:4953646-4954350 REVERSE LENGTH=234;; (*ITAG) Solyc02g088040.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44837645-44838319 transcript_region:SL2.40ch02:44837645..44838319- go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7LAI5_ARALY); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0005840 NbS00023083g0004.1 protein AED:0.00 eAED:0.00 QI:195|1|1|1|1|1|2|413|464; (*GB) gi|225452849|ref|XP_002283706.1| (e_value=6e-151) PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera];; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=3e-85) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=2e-86) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc02g088070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44845106-44848336 transcript_region:SL2.40ch02:44845106..44848336+ go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00029211g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.63|1|0.7|0.81|11|0|680; (*GB) gi|297737936|emb|CBI27137.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M995|GUN5_ARATH (e_value=0.0) Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1;; (*TAIR) AT1G48930.1 (e_value=0.0) | Symbols: AtGH9C1, GH9C1 | glycosyl hydrolase 9C1 | chr1:18101782-18104587 REVERSE LENGTH=627;; (*ITAG) Solyc02g014220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:6688560-6692345 transcript_region:SL2.40ch02:6688560..6692345+ go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00043545g0009.1 protein AED:0.25 eAED:0.25 QI:143|0.87|0.77|1|0.75|0.66|9|417|276; (*GB) gi|225444205|ref|XP_002270834.1| (e_value=5e-115) PREDICTED: ribose-5-phosphate isomerase A [Vitis vinifera];; (*SWP) sp|Q5FQ98|RPIA_GLUOX (e_value=1e-22) Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans (strain 621H) GN=rpiA PE=3 SV=1;; (*TAIR) AT5G44520.1 (e_value=2e-92) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:17934610-17936441 REVERSE LENGTH=296;; (*ITAG) Solyc02g069620.2.1 (e_value=1e-152) genomic_reference:SL2.40ch02 gene_region:34035676-34038248 transcript_region:SL2.40ch02:34035676..34038248- go_terms:GO:0009052 functional_description:"Ribose 5-phosphate isomerase-like (AHRD V1 ***- Q2LC22_9ASTR); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0009052 NbS00043545g0007.1 protein AED:0.27 eAED:0.27 QI:156|1|1|1|0.85|0.75|8|374|291; (*GB) gi|225444159|ref|XP_002270662.1| (e_value=0.0) PREDICTED: coatomer subunit epsilon-1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SA78|COPE1_ARATH (e_value=9e-180) Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1;; (*TAIR) AT1G30630.1 (e_value=0.0) | Symbols: | Coatomer epsilon subunit | chr1:10858546-10860173 REVERSE LENGTH=292;; (*ITAG) Solyc02g030250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16152752-16160121 transcript_region:SL2.40ch02:16152752..16160121- go_terms:GO:0005515 functional_description:"Coatomer protein epsilon subunit family protein (AHRD V1 ***- D7KFM4_ARALY); contains Interpro domain(s) IPR006822 Coatomer, epsilon subunit "; GO:0005515 NbS00008982g0006.1 protein AED:0.14 eAED:0.14 QI:172|0.75|0.77|1|1|1|9|0|548; (*GB) gi|359475690|ref|XP_003631732.1| (e_value=0.0) PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|A1AK01|SYC_PELPD (e_value=4e-145) Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379) GN=cysS PE=3 SV=1;; (*TAIR) AT5G38830.1 (e_value=0.0) | Symbols: | Cysteinyl-tRNA synthetase, class Ia family protein | chr5:15545764-15548094 REVERSE LENGTH=511;; (*ITAG) Solyc05g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3328877-3333922 transcript_region:SL2.40ch05:3328877..3333922- go_terms:GO:0004817 functional_description:"Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia "; GO:0004817 NbS00010699g0008.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0|0|2|0|115; (*GB) gi|118926|sp|P22242.1|DRPE_CRAPL (e_value=7e-42) RecName: Full=Desiccation-related protein PCC13-62; Flags: Precursor;; (*SWP) sp|P22242|DRPE_CRAPL (e_value=2e-43) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=6e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc05g053350.2.1 (e_value=5e-53) genomic_reference:SL2.40ch05 gene_region:62620520-62623062 transcript_region:SL2.40ch05:62620520..62623062+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00004963g0010.1 protein AED:0.13 eAED:0.13 QI:183|1|0.66|1|1|1|3|0|416; (*GB) gi|10432446|emb|CAC10358.1| (e_value=0.0) protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|P49598|P2C37_ARATH (e_value=6e-135) Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1;; (*TAIR) AT3G11410.1 (e_value=5e-136) | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 2CA | chr3:3584181-3585649 REVERSE LENGTH=399;; (*ITAG) Solyc05g052980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62296077-62297965 transcript_region:SL2.40ch05:62296077..62297965- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00005195g0009.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.66|1|0.4|0.5|6|0|215; (*GB) gi|124484389|dbj|BAF46305.1| (e_value=1e-63) pectinacetylesterase family protein [Ipomoea nil];; (*TAIR) AT4G19420.2 (e_value=3e-58) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc08g074990.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56294723-56297646 transcript_region:SL2.40ch08:56294723..56297646+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00005195g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|72 NbS00005195g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.88|0.7|1|0.55|0.5|10|265|365; (*GB) gi|296085488|emb|CBI29220.3| (e_value=1e-170) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8MS41|CCR4D_ARATH (e_value=2e-134) Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 PE=2 SV=1;; (*TAIR) AT1G31500.1 (e_value=2e-142) | Symbols: | DNAse I-like superfamily protein | chr1:11273821-11276534 REVERSE LENGTH=388;; (*ITAG) Solyc08g075010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56313651-56324720 transcript_region:SL2.40ch08:56313651..56324720- go_terms:GO:0016787 functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector (AHRD V1 **-- D6RLR7_COPC7); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0016787 NbS00034822g0001.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|117 NbS00001380g0008.1 protein AED:0.34 eAED:0.40 QI:36|0.54|0.58|1|0.63|0.66|12|651|410; (*GB) gi|296088515|emb|CBI37506.3| (e_value=1e-56) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G30590.1 (e_value=2e-38) | Symbols: | RNA polymerase I specific transcription initiation factor RRN3 protein | chr1:10835976-10839524 REVERSE LENGTH=604;; (*ITAG) Solyc02g082340.2.1 (e_value=3e-67) genomic_reference:SL2.40ch02 gene_region:40610636-40618232 transcript_region:SL2.40ch02:40610636..40618232- go_terms:GO:0003701 functional_description:"RNA polymerase I-specific transcription initiation factor RRN3 (AHRD V1 **** RRN3_MOUSE); contains Interpro domain(s) IPR007991 RNA polymerase I specific transcription initiation factor RRN3 "; GO:0003701 NbS00061373g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.57|1|0.16|0.57|7|0|282; (*GB) gi|356538021|ref|XP_003537503.1| (e_value=4e-73) PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like [Glycine max];; (*SWP) sp|Q9FEF8|FBRL1_ARATH (e_value=1e-71) rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1;; (*TAIR) AT5G52470.1 (e_value=1e-72) | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin 1 | chr5:21294290-21296509 FORWARD LENGTH=308;; (*ITAG) Solyc03g025270.2.1 (e_value=9e-75) genomic_reference:SL2.40ch03 gene_region:7084840-7087888 transcript_region:SL2.40ch03:7084840..7087888- go_terms:GO:0030515 functional_description:"rRNA 2&apos-O-methyltransferase fibrillarin (AHRD V1 ***- B6JX17_SCHJY); contains Interpro domain(s) IPR000692 Fibrillarin "; GO:0030515 NbS00061373g0010.1 protein AED:0.14 eAED:0.14 QI:93|1|0.33|1|0|0|3|0|691; (*GB) gi|147866080|emb|CAN80959.1| (e_value=9e-95) hypothetical protein VITISV_037562 [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=1e-56) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=1e-57) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc05g049960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58951213-58958621 transcript_region:SL2.40ch05:58951213..58958621- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00061373g0009.1 protein AED:0.62 eAED:0.62 QI:0|0|0|1|0|0|2|0|72 NbS00038210g0001.1 protein AED:0.30 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|195; (*GB) gi|225450539|ref|XP_002277347.1| (e_value=3e-87) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=1e-52) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=7e-54) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc01g100790.1.1 (e_value=1e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000368g0008.1 protein AED:0.40 eAED:0.71 QI:0|0|0.33|1|1|0.66|3|0|95 NbS00000368g0005.1 protein AED:0.49 eAED:0.54 QI:0|0|0|1|0|0|3|0|148; (*GB) gi|255565107|ref|XP_002523546.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g007080.1.1 (e_value=4e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:1852512-1852784 transcript_region:SL2.40ch07:1852512..1852784+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000368g0009.1 protein AED:0.33 eAED:0.39 QI:0|0|0|1|0|0|2|0|68 NbS00001165g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|1|1|2|386|164; (*GB) gi|76161012|gb|ABA40469.1| (e_value=1e-112) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=1e-101) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=8e-103) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=1e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00013476g0004.1 protein AED:0.00 eAED:0.00 QI:295|1|1|1|1|1|5|178|914; (*GB) gi|356555040|ref|XP_003545847.1| (e_value=0.0) PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max];; (*SWP) sp|Q9DCD2|SYF1_MOUSE (e_value=0.0) Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1;; (*TAIR) AT5G28740.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:10780774-10783772 FORWARD LENGTH=917;; (*ITAG) Solyc01g086990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73674808-73683304 transcript_region:SL2.40ch01:73674808..73683304+ go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SYF1 (AHRD V1 ***- C0HB68_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00015816g0009.1 protein AED:0.22 eAED:0.22 QI:159|1|0.66|1|1|1|3|0|194; (*GB) gi|4887018|gb|AAD32145.1|AF123507_1 (e_value=1e-116) Nt-iaa4.5 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24542|AX22D_VIGRR (e_value=2e-87) Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1;; (*TAIR) AT5G43700.1 (e_value=5e-79) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g065850.2.1 (e_value=7e-92) genomic_reference:SL2.40ch09 gene_region:59713336-59714551 transcript_region:SL2.40ch09:59713336..59714551- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00015816g0008.1 protein AED:0.30 eAED:0.30 QI:0|1|0.6|1|1|1|5|0|307; (*GB) gi|224082730|ref|XP_002306816.1| (e_value=2e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX99|OSB1_ARATH (e_value=1e-25) Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1;; (*TAIR) AT1G47720.1 (e_value=1e-26) | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261;; (*ITAG) Solyc09g065840.2.1 (e_value=1e-178) genomic_reference:SL2.40ch09 gene_region:59709509-59713431 transcript_region:SL2.40ch09:59709509..59713431+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding protein (AHRD V1 **** D7KGI0_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003697 NbS00018226g0008.1 protein AED:0.08 eAED:0.08 QI:240|1|0.83|1|0.8|0.66|6|0|372; (*GB) gi|359492423|ref|XP_002284303.2| (e_value=2e-124) PREDICTED: uncharacterized rhomboid protein AN10929-like [Vitis vinifera];; (*SWP) sp|Q6GMF8|RHDF1_DANRE (e_value=7e-12) Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1;; (*TAIR) AT1G77860.1 (e_value=5e-94) | Symbols: KOM | Rhomboid-related intramembrane serine protease family protein | chr1:29282643-29284458 REVERSE LENGTH=351;; (*ITAG) Solyc11g013320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6297116-6299646 transcript_region:SL2.40ch11:6297116..6299646+ go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 ***- D7KPC1_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00018226g0009.1 protein AED:0.21 eAED:0.27 QI:0|0.5|0.33|1|0.5|0.66|3|0|328; (*GB) gi|225459431|ref|XP_002285824.1| (e_value=2e-101) PREDICTED: protein grpE [Vitis vinifera];; (*SWP) sp|Q3ANN0|GRPE_SYNSC (e_value=1e-34) Protein grpE OS=Synechococcus sp. (strain CC9605) GN=grpE PE=3 SV=1;; (*TAIR) AT1G36390.2 (e_value=3e-61) | Symbols: | Co-chaperone GrpE family protein | chr1:13701811-13703524 REVERSE LENGTH=279;; (*ITAG) Solyc11g013390.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6377812-6379689 transcript_region:SL2.40ch11:6377812..6379689- go_terms:GO:0005739 functional_description:"GrpE protein homolog (AHRD V1 *-*- B9GUH1_POPTR); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005739 NbS00001513g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=2e-55) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=6e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=3e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00001513g0007.1 protein AED:0.08 eAED:0.08 QI:1077|1|1|1|0|0|3|53|52 NbS00001513g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|575; (*GB) gi|147792200|emb|CAN62034.1| (e_value=8e-171) hypothetical protein VITISV_014731 [Vitis vinifera];; (*SWP) sp|F4K1B1|RPAP2_ARATH (e_value=1e-52) Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1;; (*TAIR) AT5G26760.2 (e_value=1e-53) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:9403869-9407170 REVERSE LENGTH=735;; (*ITAG) Solyc01g101010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82636054-82642167 transcript_region:SL2.40ch01:82636054..82642167- functional_description:"AGAP008431-PA (Fragment) (AHRD V1 *-*- A7UUL5_ANOGA); contains Interpro domain(s) IPR007308 Protein of unknown function DUF408 "; NbS00017144g0008.1 protein AED:0.11 eAED:0.11 QI:64|1|1|1|1|1|5|178|379; (*GB) gi|225424651|ref|XP_002282372.1| (e_value=0.0) PREDICTED: GDSL esterase/lipase At3g26430-like [Vitis vinifera];; (*SWP) sp|Q9LIN2|GDL53_ARATH (e_value=0.0) GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1;; (*TAIR) AT3G26430.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:9674419-9675889 FORWARD LENGTH=380;; (*ITAG) Solyc05g013680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6982588-6984952 transcript_region:SL2.40ch05:6982588..6984952- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At3g26430 (AHRD V1 ***- GDL53_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00017144g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.66|1|0.90|0.91|12|0|383; (*GB) gi|359473149|ref|XP_002282407.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243914 [Vitis vinifera];; (*TAIR) AT1G13000.2 (e_value=2e-165) | Symbols: | Protein of unknown function (DUF707) | chr1:4436402-4438693 REVERSE LENGTH=401;; (*ITAG) Solyc05g013650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6953265-6955654 transcript_region:SL2.40ch05:6953265..6955654- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00017144g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.88|1|1|1|9|0|620; (*GB) gi|225424657|ref|XP_002282396.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249068 [Vitis vinifera];; (*TAIR) AT1G67840.1 (e_value=0.0) | Symbols: CSK | chloroplast sensor kinase | chr1:25434156-25436839 FORWARD LENGTH=611;; (*ITAG) Solyc05g013670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6973420-6980126 transcript_region:SL2.40ch05:6973420..6980126- go_terms:GO:0005524,GO:0016301 functional_description:"ATP binding protein (AHRD V1 **** B6SY20_MAIZE); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524,GO:0016301 NbS00018097g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0.5|1|1|1|2|0|174; (*GB) gi|359473025|ref|XP_003631233.1| (e_value=3e-64) PREDICTED: uncharacterized protein LOC100266416 [Vitis vinifera];; (*TAIR) AT1G13530.1 (e_value=4e-46) | Symbols: | Protein of unknown function (DUF1262) | chr1:4633740-4635129 REVERSE LENGTH=385;; (*ITAG) Solyc05g010460.2.1 (e_value=5e-81) genomic_reference:SL2.40ch05 gene_region:4703441-4705121 transcript_region:SL2.40ch05:4703441..4705121- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00018097g0004.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|0|0|3|0|112; (*GB) gi|224101603|ref|XP_002312349.1| (e_value=4e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13500.1 (e_value=7e-16) | Symbols: | Protein of unknown function (DUF1262) | chr1:4627789-4629169 REVERSE LENGTH=386;; (*ITAG) Solyc05g010470.2.1 (e_value=1e-43) genomic_reference:SL2.40ch05 gene_region:4706112-4707923 transcript_region:SL2.40ch05:4706112..4707923- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00005767g0003.1 protein AED:0.07 eAED:0.07 QI:530|1|1|1|0.75|0.6|5|221|579; (*GB) gi|255566995|ref|XP_002524480.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9SZY4|PTR27_ARATH (e_value=0.0) Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1;; (*TAIR) AT2G26690.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577;; (*ITAG) Solyc01g096880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79634561-79638218 transcript_region:SL2.40ch01:79634561..79638218- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00020316g0011.1 protein AED:0.09 eAED:0.09 QI:9|0.7|0.36|1|0.9|0.90|11|0|848; (*GB) gi|255544856|ref|XP_002513489.1| (e_value=0.0) origin recognition complex subunit, putative [Ricinus communis];; (*SWP) sp|O16810|ORC1_DROME (e_value=3e-64) Origin recognition complex subunit 1 OS=Drosophila melanogaster GN=Orc1 PE=1 SV=2;; (*TAIR) AT4G14700.1 (e_value=3e-177) | Symbols: ATORC1A, ORC1A | origin recognition complex 1 | chr4:8422236-8424665 FORWARD LENGTH=809;; (*ITAG) Solyc03g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1013878-1021515 transcript_region:SL2.40ch03:1013878..1021515- go_terms:GO:0010385 functional_description:"Origin recognition complex subunit 1 (AHRD V1 **-- Q945C8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0010385 NbS00020316g0014.1 protein AED:0.00 eAED:0.00 QI:2028|1|1|1|1|1|2|2255|227; (*GB) gi|389607304|dbj|BAM17523.1| (e_value=7e-110) N' tobamovirus resistance protein, partial [Nicotiana tabacum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=5e-33) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=3e-34) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g007630.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00024736g0006.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.28|1|0.66|0.85|7|0|310; (*GB) gi|118486481|gb|ABK95080.1| (e_value=4e-99) unknown [Populus trichocarpa];; (*TAIR) AT5G16520.1 (e_value=5e-76) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbS00024736g0007.1 protein AED:0.43 eAED:0.49 QI:18|0.5|0.33|1|0|0|3|0|224; (*GB) gi|224128948|ref|XP_002329006.1| (e_value=8e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16520.1 (e_value=1e-77) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=3e-110) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbS00008935g0001.1 protein AED:0.16 eAED:0.17 QI:873|0.91|0.76|1|1|1|13|0|1039; (*GB) gi|359491503|ref|XP_003634285.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100854850 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-99) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G73660.1 (e_value=0.0) | Symbols: | protein tyrosine kinase family protein | chr1:27692247-27696718 REVERSE LENGTH=1030;; (*ITAG) Solyc06g068980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39180022-39189671 transcript_region:SL2.40ch06:39180022..39189671- go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712,GO:0004709 NbS00008935g0002.1 protein AED:0.20 eAED:0.20 QI:206|0.75|0.66|1|0.87|0.88|9|0|274; (*GB) gi|297734310|emb|CBI15557.3| (e_value=2e-82) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73650.2 (e_value=4e-75) | Symbols: | Protein of unknown function (DUF1295) | chr1:27688549-27690165 REVERSE LENGTH=291;; (*ITAG) Solyc06g068970.2.1 (e_value=3e-84) genomic_reference:SL2.40ch06 gene_region:39177246-39179596 transcript_region:SL2.40ch06:39177246..39179596- go_terms:GO:0016021 functional_description:"Conserved transmembrane protein (AHRD V1 **-- A0PNM5_MYCUA); contains Interpro domain(s) IPR010721 Protein of unknown function DUF1295 "; GO:0016021 NbS00008935g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|224068340|ref|XP_002302713.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VI10|SMD2_DROME (e_value=2e-46) Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=3 SV=1;; (*TAIR) AT3G62840.2 (e_value=8e-70) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:23235727-23236615 REVERSE LENGTH=108;; (*ITAG) Solyc09g075130.2.1 (e_value=5e-71) genomic_reference:SL2.40ch09 gene_region:62428848-62432417 transcript_region:SL2.40ch09:62428848..62432417- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein-like protein (AHRD V1 ***- Q8L3W7_ARATH); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00024294g0008.1 protein AED:0.18 eAED:0.18 QI:150|1|1|1|0.8|0.66|6|266|133; (*GB) gi|445612|prf||1909359A (e_value=1e-82) ribosomal protein S19;; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=6e-80) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=4e-81) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=3e-86) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00024294g0009.1 protein AED:0.45 eAED:0.49 QI:298|0.25|0.46|0.84|0.33|0.53|13|0|310; (*GB) gi|296085205|emb|CBI28700.3| (e_value=9e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SY03|FB219_ARATH (e_value=2e-16) F-box protein At4g02760 OS=Arabidopsis thaliana GN=At4g02760 PE=2 SV=2;; (*TAIR) AT4G02760.3 (e_value=8e-18) | Symbols: | RNI-like superfamily protein | chr4:1224336-1227857 REVERSE LENGTH=551; NbS00024294g0101.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|163 NbS00027068g0009.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|721; (*GB) gi|224087429|ref|XP_002308163.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|O80933|SCL9_ARATH (e_value=0.0) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc10g086530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64646687-64648972 transcript_region:SL2.40ch10:64646687..64648972+ functional_description:"GRAS family transcription factor (AHRD V1 **-- B9HBM9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00027068g0023.1 protein AED:0.18 eAED:0.18 QI:108|1|0.88|1|0.5|0.33|9|0|513; (*GB) gi|225440364|ref|XP_002270472.1| (e_value=1e-180) PREDICTED: uncharacterized protein LOC100256181 [Vitis vinifera];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=1e-82) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT5G02320.2 (e_value=9e-124) | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548;; (*ITAG) Solyc09g010820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00027068g0002.1 protein AED:0.18 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|576; (*GB) gi|224123678|ref|XP_002319139.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFQ4|PP383_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2;; (*TAIR) AT5G15010.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4857241-4858959 FORWARD LENGTH=572;; (*ITAG) Solyc07g025250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26966772-26968418 transcript_region:SL2.40ch07:26966772..26968418- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027068g0020.1 protein AED:0.10 eAED:0.10 QI:474|1|1|1|0|0.33|3|345|74; (*GB) gi|332429340|gb|AEE69071.1| (e_value=9e-33) expansin-4 [Petunia hybrid cultivar];; (*SWP) sp|Q852A1|EXPA7_ORYSJ (e_value=2e-29) Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1;; (*TAIR) AT5G02260.1 (e_value=2e-30) | Symbols: ATEXPA9, EXP9, ATEXP9, ATHEXP ALPHA 1.10, EXPA9 | expansin A9 | chr5:463224-464840 FORWARD LENGTH=258;; (*ITAG) Solyc10g086520.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64635036-64636416 transcript_region:SL2.40ch10:64635036..64636416- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00027068g0025.1 protein AED:0.16 eAED:0.16 QI:329|0.66|0.56|0.93|0.66|0.56|16|0|1447; (*GB) gi|225434891|ref|XP_002283273.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VZI8|FTSHA_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1;; (*TAIR) AT1G07510.1 (e_value=0.0) | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-2309380 FORWARD LENGTH=813;; (*ITAG) Solyc10g086550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64658970-64670325 transcript_region:SL2.40ch10:64658970..64670325- go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog 3 (AHRD V1 *--- FTSH3_SYNY3); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00027068g0022.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|365|245; (*GB) gi|225440398|ref|XP_002268453.1| (e_value=4e-55) PREDICTED: uncharacterized protein LOC100264843 [Vitis vinifera];; (*ITAG) Solyc10g086560.1.1 (e_value=3e-122) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:64674861-64677116 transcript_region:SL2.40ch10:64674861..64677116- functional_description:"Unknown Protein (AHRD V1)"; NbS00017832g0008.1 protein AED:0.03 eAED:0.03 QI:95|0.5|0.66|1|0.5|0.66|3|368|267; (*GB) gi|356530229|ref|XP_003533685.1| (e_value=7e-98) PREDICTED: probable S-acyltransferase At3g18620-like [Glycine max];; (*SWP) sp|Q9LIH7|ZDHC7_ARATH (e_value=2e-84) Probable S-acyltransferase At3g18620 OS=Arabidopsis thaliana GN=At3g18620 PE=2 SV=1;; (*TAIR) AT3G18620.1 (e_value=1e-85) | Symbols: | DHHC-type zinc finger family protein | chr3:6408849-6410716 FORWARD LENGTH=345;; (*ITAG) Solyc04g009380.1.1 (e_value=4e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2807742-2815384 transcript_region:SL2.40ch04:2807742..2815384+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00017832g0009.1 protein AED:0.15 eAED:0.15 QI:1256|0|0.5|1|1|1|2|0|90; (*ITAG) Solyc12g039050.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00014973g0006.1 protein AED:0.28 eAED:0.28 QI:76|0.5|0.55|1|0.37|0.55|9|621|345; (*GB) gi|224072665|ref|XP_002303829.1| (e_value=5e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LBL5|PRT1_ARATH (e_value=2e-51) E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2;; (*TAIR) AT3G24800.1 (e_value=2e-52) | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795 FORWARD LENGTH=410;; (*ITAG) Solyc09g091790.2.1 (e_value=5e-149) genomic_reference:SL2.40ch09 gene_region:66354922-66361692 transcript_region:SL2.40ch09:66354922..66361692- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase PRT1 (AHRD V1 **-* PRT1_ARATH); contains Interpro domain(s) IPR000433 Zinc finger, ZZ-type "; GO:0004842 NbS00010468g0005.1 protein AED:0.07 eAED:0.16 QI:0|0|0|1|0|0|3|0|340; (*GB) gi|224143539|ref|XP_002324990.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19650.1 (e_value=1e-21) | Symbols: ATOFP8, OFP8 | ovate family protein 8 | chr5:6639632-6640297 REVERSE LENGTH=221;; (*ITAG) Solyc08g068170.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54495235-54496749 transcript_region:SL2.40ch08:54495235..54496749- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SHS0_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00039336g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.6|1|0.5|0.6|5|0|295; (*GB) gi|5381253|dbj|BAA82306.1| (e_value=8e-170) peroxidase [Nicotiana tabacum];; (*SWP) sp|A7NY33|PER4_VITVI (e_value=1e-136) Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1;; (*TAIR) AT5G05340.1 (e_value=2e-135) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc06g050440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29541578-29543891 transcript_region:SL2.40ch06:29541578..29543891- go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q9XIV9_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00039336g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|246; (*GB) gi|356576105|ref|XP_003556174.1| (e_value=2e-110) PREDICTED: uncharacterized protein LOC100784044 [Glycine max];; (*TAIR) AT1G22750.4 (e_value=4e-72) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1475 (InterPro:IPR009943); Has 186 Blast hits to 155 proteins in 21 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). | chr1:8050911-8052714 FORWARD LENGTH=257;; (*ITAG) Solyc04g072050.2.1 (e_value=1e-139) genomic_reference:SL2.40ch04 gene_region:56701049-56708339 transcript_region:SL2.40ch04:56701049..56708339- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009943 Protein of unknown function DUF1475 "; NbS00004695g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|3|0|255; (*GB) gi|22128591|gb|AAM52341.1| (e_value=1e-106) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9LQ14|PPR96_ARATH (e_value=1e-44) Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2;; (*TAIR) AT1G62930.1 (e_value=1e-45) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23306534-23308423 FORWARD LENGTH=629;; (*ITAG) Solyc06g007850.2.1 (e_value=8e-96) genomic_reference:SL2.40ch06 gene_region:1750049-1752394 transcript_region:SL2.40ch06:1750049..1752394- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00004695g0006.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|225 NbS00004695g0016.1 protein AED:0.43 eAED:0.54 QI:0|0|0.33|0.66|1|1|3|273|68 NbS00004695g0011.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|0|0|2|0|214; (*GB) gi|22128589|gb|AAM52340.1| (e_value=2e-61) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=3e-21) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-22) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00004695g0015.1 protein AED:0.47 eAED:0.50 QI:0|0|0|1|0|0|2|0|79; (*ITAG) Solyc06g007280.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00059003g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|55859472|emb|CAI05932.1| (e_value=7e-60) leafy cotyledon 1-like protein [Helianthus annuus];; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=2e-57) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=9e-59) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc04g015060.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5258000-5260765 transcript_region:SL2.40ch04:5258000..5260765+ go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-*- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00010488g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.61|1|0.75|0.84|13|232|848; (*GB) gi|224066026|ref|XP_002301999.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=2e-64) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT2G21300.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862;; (*ITAG) Solyc04g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62704486-62709603 transcript_region:SL2.40ch04:62704486..62709603+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00010488g0003.1 protein AED:0.29 eAED:0.29 QI:135|0|0.5|0.5|1|1|2|0|88 NbS00010488g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.42|0.37|1|0.71|0.62|8|0|784; (*GB) gi|224085790|ref|XP_002307697.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIG9|ARC6_ARATH (e_value=1e-128) Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1;; (*TAIR) AT5G42480.1 (e_value=1e-129) | Symbols: ARC6 | Chaperone DnaJ-domain superfamily protein | chr5:16985295-16988332 FORWARD LENGTH=801;; (*ITAG) Solyc04g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62709760-62714561 transcript_region:SL2.40ch04:62709760..62714561- go_terms:GO:0005515 functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 *--- B2J6V8_NOSP7); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005515 NbS00023329g0014.1 protein AED:0.17 eAED:0.17 QI:227|1|1|1|1|1|4|342|397; (*GB) gi|356571785|ref|XP_003554053.1| (e_value=0.0) PREDICTED: xylosyltransferase 1-like [Glycine max];; (*SWP) sp|Q9H1B5|XYLT2_HUMAN (e_value=4e-26) Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2;; (*TAIR) AT3G03690.1 (e_value=6e-177) | Symbols: UNE7 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:911494-913643 REVERSE LENGTH=378;; (*ITAG) Solyc10g079490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60351738-60356549 transcript_region:SL2.40ch10:60351738..60356549- go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00023329g0019.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.66|1|1|0.83|6|0|563; (*GB) gi|10047219|dbj|BAB13368.1| (e_value=0.0) L-galactono-1,4-lactone dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SU56|GLDH_ARATH (e_value=0.0) L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1;; (*TAIR) AT3G47930.1 (e_value=0.0) | Symbols: ATGLDH, GLDH | L-galactono-1,4-lactone dehydrogenase | chr3:17684500-17687426 FORWARD LENGTH=610;; (*ITAG) Solyc10g079470.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:60341212-60348821 transcript_region:SL2.40ch10:60341212..60348821- go_terms:GO:0016633,GO:0080049 functional_description:"L-galactono-1,4-lactone dehydrogenase"; GO:0016633,GO:0080049 NbS00023329g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|2|0|555; (*GB) gi|224086873|ref|XP_002307990.1| (e_value=5e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=2e-13) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G50120.1 (e_value=9e-40) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc10g079520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60380417-60382000 transcript_region:SL2.40ch10:60380417..60382000+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00023329g0002.1 protein AED:0.24 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|289; (*GB) gi|11133025|sp|Q43578.1|LCYB_TOBAC (e_value=0.0) RecName: Full=Lycopene beta cyclase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q43578|LCYB_TOBAC (e_value=0.0) Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=1 SV=1;; (*TAIR) AT3G10230.1 (e_value=6e-129) | Symbols: LYC | lycopene cyclase | chr3:3164340-3165845 REVERSE LENGTH=501;; (*ITAG) Solyc10g079480.1.1 (e_value=1e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60349353-60350855 transcript_region:SL2.40ch10:60349353..60350855+ go_terms:GO:0016117 functional_description:"Lycopene beta-cyclase 2"; GO:0016117 NbS00023329g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|11133025|sp|Q43578.1|LCYB_TOBAC (e_value=1e-146) RecName: Full=Lycopene beta cyclase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q43578|LCYB_TOBAC (e_value=4e-148) Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=1 SV=1;; (*TAIR) AT3G10230.2 (e_value=5e-135) | Symbols: LYC | lycopene cyclase | chr3:3164340-3165449 REVERSE LENGTH=369;; (*ITAG) Solyc04g040190.1.1 (e_value=6e-144) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:31103654-31105156 transcript_region:SL2.40ch04:31103654..31105156- go_terms:GO:0016117 functional_description:"Lycopene beta-cyclase 1"; GO:0016117 NbS00033697g0002.1 protein AED:0.46 eAED:0.46 QI:73|0.66|0.25|0.75|0|0|4|0|134; (*GB) gi|225441207|ref|XP_002270931.1| (e_value=3e-70) PREDICTED: zinc finger protein 593-like [Vitis vinifera];; (*SWP) sp|B0BLT0|ZN593_XENTR (e_value=4e-17) Zinc finger protein 593 OS=Xenopus tropicalis GN=znf593 PE=2 SV=1;; (*TAIR) AT2G36930.1 (e_value=2e-61) | Symbols: | zinc finger (C2H2 type) family protein | chr2:15510002-15511347 REVERSE LENGTH=198;; (*ITAG) Solyc09g008230.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:1681078-1684790 transcript_region:SL2.40ch09:1681078..1684790+ go_terms:GO:0003714 functional_description:"Zinc finger protein 593 (Fragment) (AHRD V1 **-- B2L5L2_XENBO); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0003714 NbS00003217g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|147836973|emb|CAN74757.1| (e_value=1e-75) hypothetical protein VITISV_026412 [Vitis vinifera];; (*SWP) sp|Q9S7N7|PSAG_ARATH (e_value=2e-65) Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1;; (*TAIR) AT1G55670.1 (e_value=1e-66) | Symbols: PSAG | photosystem I subunit G | chr1:20802874-20803356 REVERSE LENGTH=160;; (*ITAG) Solyc07g066150.1.1 (e_value=1e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64869442-64869882 transcript_region:SL2.40ch07:64869442..64869882+ go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit V (AHRD V1 ***- B6U534_MAIZE); contains Interpro domain(s) IPR017494 Photosystem I reaction center, PsaG, plant "; GO:0016020 NbS00003217g0014.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|133 NbS00003217g0012.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|1|1|2|0|91; (*GB) gi|206204096|gb|ACI05900.1| (e_value=5e-34) kinase-like protein pac.x.5.14 [Platanus x acerifolia];; (*SWP) sp|Q9SD62|Y3471_ARATH (e_value=1e-29) Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1;; (*TAIR) AT3G47110.1 (e_value=7e-31) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17347103-17350296 REVERSE LENGTH=1025;; (*ITAG) Solyc04g009040.2.1 (e_value=4e-33) genomic_reference:SL2.40ch04 gene_region:2600952-2604337 transcript_region:SL2.40ch04:2600952..2604337- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00018262g0017.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.6|1|0.75|0.6|5|0|758; (*GB) gi|225430073|ref|XP_002281782.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259547 [Vitis vinifera];; (*TAIR) AT5G25590.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr5:8906684-8909847 REVERSE LENGTH=775;; (*ITAG) Solyc08g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54382711-54391510 transcript_region:SL2.40ch08:54382711..54391510- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 **-- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00018262g0007.1 protein AED:0.28 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|90 NbS00018262g0015.1 protein AED:0.03 eAED:0.03 QI:191|1|0.95|1|0.95|0.90|22|0|2009; (*GB) gi|296081899|emb|CBI20904.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O75417|DPOLQ_HUMAN (e_value=8e-167) DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2;; (*TAIR) AT4G32700.2 (e_value=0.0) | Symbols: | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154;; (*ITAG) Solyc08g068120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54406897-54423148 transcript_region:SL2.40ch08:54406897..54423148+ go_terms:GO:0005524,GO:0006260 functional_description:"DNA polymerase I family protein expressed (AHRD V1 ***- Q2QTK2_ORYSJ); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0005524,GO:0006260 NbS00018262g0003.1 protein AED:0.25 eAED:0.25 QI:45|1|1|1|0.66|0.5|4|538|131; (*GB) gi|124028605|gb|ABM89110.1| (e_value=1e-79) truncated hemoglobin [Populus tremula x Populus tremuloides];; (*SWP) sp|O31607|TRHBO_BACSU (e_value=1e-16) Group 2 truncated hemoglobin yjbI OS=Bacillus subtilis (strain 168) GN=yjbI PE=1 SV=1;; (*TAIR) AT4G32690.1 (e_value=7e-79) | Symbols: GLB3, ATGLB3 | hemoglobin 3 | chr4:15765486-15766862 FORWARD LENGTH=175;; (*ITAG) Solyc08g068070.2.1 (e_value=5e-89) genomic_reference:SL2.40ch08 gene_region:54369971-54375358 transcript_region:SL2.40ch08:54369971..54375358+ go_terms:GO:0005344 functional_description:"Globin (AHRD V1 ***- C8WRW6_ALIAD); contains Interpro domain(s) IPR001486 Globin, truncated bacterial-like "; GO:0005344 NbS00034440g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|293; (*GB) gi|225440870|ref|XP_002276587.1| (e_value=4e-67) PREDICTED: uncharacterized protein LOC100244210 [Vitis vinifera];; (*TAIR) AT2G36220.1 (e_value=2e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15192556-15193347 FORWARD LENGTH=263;; (*ITAG) Solyc09g009840.1.1 (e_value=2e-139) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:3332891-3333757 transcript_region:SL2.40ch09:3332891..3333757- functional_description:"Calcium/calmodulin protein kinase (AHRD V1 *-*- Q84ZT8_TOBAC)"; NbS00034440g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|409; (*GB) gi|225440868|ref|XP_002276568.1| (e_value=2e-136) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=2e-23) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G03870.1 (e_value=1e-81) | Symbols: | Glutaredoxin family protein | chr5:1035813-1036967 REVERSE LENGTH=384;; (*ITAG) Solyc09g009860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3350085-3351284 transcript_region:SL2.40ch09:3350085..3351284+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LWU7_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00034440g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0|2|0|105; (*GB) gi|297740120|emb|CBI30302.3| (e_value=8e-37) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=2e-16) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT3G52720.1 (e_value=8e-35) | Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhydrase 1 | chr3:19538804-19541116 REVERSE LENGTH=284;; (*ITAG) Solyc09g009830.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:3327427-3330192 transcript_region:SL2.40ch09:3327427..3330192+ go_terms:GO:0004089 functional_description:"Carbonic anhydrase (Carbonate dehydratase) (AHRD V1 **** C1DTU5_SULAA); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0004089 NbS00031297g0014.1 protein AED:0.09 eAED:0.12 QI:181|0.55|0.7|0.9|0.55|0.3|10|608|929; (*GB) gi|255580768|ref|XP_002531205.1| (e_value=4e-157) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5PNS0|Y3228_ARATH (e_value=2e-35) PHD finger protein At3g20280 OS=Arabidopsis thaliana GN=At3g20280 PE=2 SV=1;; (*TAIR) AT1G50620.1 (e_value=3e-77) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:18748537-18751005 FORWARD LENGTH=629;; (*ITAG) Solyc07g065000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64167086-64172953 transcript_region:SL2.40ch07:64167086..64172953- go_terms:GO:0003677,GO:0008270 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--- KDM5B_MOUSE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00031297g0020.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.87|0.87|0.85|0.75|8|464|255; (*GB) gi|357494735|ref|XP_003617656.1| (e_value=4e-180) Serine/threonine protein phosphatase [Medicago truncatula];; (*SWP) sp|P48528|PPX2_ARATH (e_value=1e-179) Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2;; (*TAIR) AT5G55260.1 (e_value=1e-180) | Symbols: PPX2, PPX-2 | protein phosphatase X 2 | chr5:22416808-22418621 FORWARD LENGTH=305;; (*ITAG) Solyc07g065020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64179982-64186849 transcript_region:SL2.40ch07:64179982..64186849- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I197_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00031297g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|1|1|1|4|0|249; (*GB) gi|356524295|ref|XP_003530765.1| (e_value=1e-122) PREDICTED: LOW QUALITY PROTEIN: indole-3-acetate O-methyltransferase 1-like [Glycine max];; (*SWP) sp|Q9FLN8|IAMT1_ARATH (e_value=2e-88) Indole-3-acetate O-methyltransferase 1 OS=Arabidopsis thaliana GN=IAMT1 PE=1 SV=1;; (*TAIR) AT5G55250.2 (e_value=4e-90) | Symbols: IAMT1 | IAA carboxylmethyltransferase 1 | chr5:22407589-22410291 REVERSE LENGTH=348;; (*ITAG) Solyc07g064990.2.1 (e_value=3e-115) genomic_reference:SL2.40ch07 gene_region:64155555-64158080 transcript_region:SL2.40ch07:64155555..64158080- go_terms:GO:0051749,GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase-like protein (AHRD V1 **** Q8LAR1_ARATH); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0051749,GO:0008757 NbS00031297g0019.1 protein AED:0.33 eAED:0.33 QI:158|1|1|1|0.66|0.57|7|268|496; (*GB) gi|224131712|ref|XP_002321159.1| (e_value=4e-173) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9MAU5|Y1049_ARATH (e_value=6e-162) Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1;; (*TAIR) AT1G04970.1 (e_value=4e-163) | Symbols: | lipid-binding serum glycoprotein family protein | chr1:1411216-1413431 FORWARD LENGTH=488;; (*ITAG) Solyc07g065010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64173852-64179193 transcript_region:SL2.40ch07:64173852..64179193- go_terms:GO:0008289 functional_description:"Bactericidal permeability-increasing protein (AHRD V1 ***- Q4KTY6_ICTPU); contains Interpro domain(s) IPR017942 Lipid-binding serum glycoprotein, N-terminal "; GO:0008289 NbS00042885g0003.1 protein AED:0.25 eAED:0.31 QI:0|1|0.5|1|1|1|4|0|262; (*GB) gi|224088842|ref|XP_002308564.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|P51273|YCF36_PORPU (e_value=2e-37) Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1;; (*TAIR) AT5G11840.1 (e_value=4e-103) | Symbols: | Protein of unknown function (DUF1230) | chr5:3813610-3814805 REVERSE LENGTH=265;; (*ITAG) Solyc08g065260.2.1 (e_value=7e-163) genomic_reference:SL2.40ch08 gene_region:50351037-50355960 transcript_region:SL2.40ch08:50351037..50355960+ functional_description:"Ycf36 protein (AHRD V1 *-*- Q55866_SYNY3); contains Interpro domain(s) IPR009631 Protein of unknown function DUF1230 "; NbS00060991g0004.1 protein AED:0.12 eAED:0.12 QI:479|1|1|1|1|1|3|278|152; (*GB) gi|225433045|ref|XP_002284723.1| (e_value=4e-56) PREDICTED: CASP-like protein At3g23200 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L7R5|CSPLG_ARATH (e_value=2e-48) CASP-like protein At3g23200 OS=Arabidopsis thaliana GN=At3g23200 PE=2 SV=1;; (*TAIR) AT3G23200.1 (e_value=1e-49) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:8281659-8282603 FORWARD LENGTH=152;; (*ITAG) Solyc09g089850.2.1 (e_value=7e-76) genomic_reference:SL2.40ch09 gene_region:64832564-64835830 transcript_region:SL2.40ch09:64832564..64835830+ functional_description:"UPF0497 membrane protein At3g23200 (AHRD V1 ***- U497J_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00014841g0008.1 protein AED:0.20 eAED:0.20 QI:581|1|1|1|0.87|1|9|717|261; (*GB) gi|224063629|ref|XP_002301236.1| (e_value=4e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54YW1|ELMOA_DICDI (e_value=1e-29) ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1;; (*TAIR) AT3G60260.4 (e_value=6e-162) | Symbols: | ELMO/CED-12 family protein | chr3:22274303-22276839 FORWARD LENGTH=266;; (*ITAG) Solyc01g089980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75451177-75457993 transcript_region:SL2.40ch01:75451177..75457993- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein (AHRD V1 ***- Q16Y60_AEDAE); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00014841g0007.1 protein AED:0.11 eAED:0.11 QI:158|1|1|1|1|1|4|153|148; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=2e-98) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=5e-100) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=8e-87) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=2e-97) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00019247g0014.1 protein AED:0.01 eAED:0.01 QI:436|1|1|1|1|1|3|144|222; (*GB) gi|224053402|ref|XP_002297801.1| (e_value=1e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=2e-64) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G80690.1 (e_value=1e-99) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:30329283-30330524 REVERSE LENGTH=227;; (*ITAG) Solyc03g117100.2.1 (e_value=1e-129) genomic_reference:SL2.40ch03 gene_region:60404176-60405950 transcript_region:SL2.40ch03:60404176..60405950+ functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00019247g0012.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|255572763|ref|XP_002527314.1| (e_value=6e-44) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q39262|ZFP3_ARATH (e_value=1e-25) Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1;; (*TAIR) AT5G25160.1 (e_value=1e-26) | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687524-8688231 FORWARD LENGTH=235;; (*ITAG) Solyc03g117070.1.1 (e_value=3e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60387755-60388444 transcript_region:SL2.40ch03:60387755..60388444+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00019247g0023.1 protein AED:0.07 eAED:0.07 QI:126|0.75|0.6|1|0|0.4|5|0|1021; (*GB) gi|225443088|ref|XP_002271967.1| (e_value=0.0) PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis vinifera];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=6e-41) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G80680.1 (e_value=0.0) | Symbols: SAR3, MOS3, PRE, NUP96 | SUPPRESSOR OF AUXIN RESISTANCE 3 | chr1:30324219-30328489 FORWARD LENGTH=1046;; (*ITAG) Solyc03g117120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60419258-60426888 transcript_region:SL2.40ch03:60419258..60426888- go_terms:GO:0015288 functional_description:"Nucleoporin (Fragment) (AHRD V1 *--- Q677F1_HYAOR); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0015288 NbS00019247g0022.1 protein AED:0.23 eAED:0.26 QI:0|0.88|0.8|1|0.77|0.7|10|266|214; (*GB) gi|359482420|ref|XP_003632772.1| (e_value=1e-113) PREDICTED: DCN1-like protein 4 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8CCA0|DCNL4_MOUSE (e_value=4e-35) DCN1-like protein 4 OS=Mus musculus GN=Dcun1d4 PE=2 SV=1;; (*TAIR) AT1G15860.2 (e_value=2e-105) | Symbols: | Domain of unknown function (DUF298) | chr1:5455055-5456741 FORWARD LENGTH=227;; (*ITAG) Solyc03g117110.2.1 (e_value=8e-132) genomic_reference:SL2.40ch03 gene_region:60411910-60417276 transcript_region:SL2.40ch03:60411910..60417276- go_terms:GO:0043130 functional_description:"DCN1-like protein 4 (AHRD V1 ***- B6TI85_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00019247g0020.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|3|0|251; (*GB) gi|225443095|ref|XP_002274018.1| (e_value=7e-78) PREDICTED: uncharacterized protein At2g39795, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8W487|YB95_ARATH (e_value=2e-16) Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=1 SV=1;; (*TAIR) AT1G15870.1 (e_value=2e-66) | Symbols: | Mitochondrial glycoprotein family protein | chr1:5457153-5458245 FORWARD LENGTH=242;; (*ITAG) Solyc03g117080.2.1 (e_value=1e-130) genomic_reference:SL2.40ch03 gene_region:60392756-60395276 transcript_region:SL2.40ch03:60392756..60395276- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7KDK7_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00019247g0021.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|0.75|0.6|5|329|234; (*GB) gi|225443092|ref|XP_002273577.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100243908 [Vitis vinifera];; (*TAIR) AT1G80980.1 (e_value=5e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80700.1); Has 477 Blast hits to 341 proteins in 85 species: Archae - 2; Bacteria - 44; Metazoa - 78; Fungi - 37; Plants - 42; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). | chr1:30422184-30423440 REVERSE LENGTH=214;; (*ITAG) Solyc03g117090.2.1 (e_value=8e-80) genomic_reference:SL2.40ch03 gene_region:60395706-60401093 transcript_region:SL2.40ch03:60395706..60401093- functional_description:"Unknown Protein (AHRD V1)"; NbS00020595g0001.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|0.6|0.66|6|0|198; (*GB) gi|255576571|ref|XP_002529176.1| (e_value=4e-123) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LQI7|CIA30_ARATH (e_value=2e-117) Probable complex I intermediate-associated protein 30 OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2;; (*TAIR) AT1G17350.1 (e_value=1e-118) | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated protein 30 | chr1:5942391-5944272 FORWARD LENGTH=227;; (*ITAG) Solyc11g005060.1.1 (e_value=6e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:55055-59721 transcript_region:SL2.40ch11:55055..59721- functional_description:"Complex I intermediate-associated protein 30 (AHRD V1 ***- B6C4T5_9GAMM); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 "; NbS00038135g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|335; (*GB) gi|225466219|ref|XP_002267209.1| (e_value=3e-146) PREDICTED: flavonol sulfotransferase-like [Vitis vinifera];; (*SWP) sp|P52839|SOT12_ARATH (e_value=3e-112) Cytosolic sulfotransferase 12 OS=Arabidopsis thaliana GN=SOT12 PE=1 SV=2;; (*TAIR) AT2G03760.1 (e_value=2e-113) | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12, SOT12 | sulphotransferase 12 | chr2:1149475-1150455 REVERSE LENGTH=326;; (*ITAG) Solyc05g011870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbS00038135g0005.1 protein AED:0.13 eAED:0.27 QI:0|0|0|0.5|0|0.5|2|0|127; (*GB) gi|255541932|ref|XP_002512030.1| (e_value=1e-38) Flavonol 4'-sulfotransferase, putative [Ricinus communis];; (*SWP) sp|P52839|SOT12_ARATH (e_value=2e-34) Cytosolic sulfotransferase 12 OS=Arabidopsis thaliana GN=SOT12 PE=1 SV=2;; (*TAIR) AT2G03760.1 (e_value=1e-35) | Symbols: ST, ATST1, RAR047, ST1, AtSOT1, AtSOT12, SOT12 | sulphotransferase 12 | chr2:1149475-1150455 REVERSE LENGTH=326;; (*ITAG) Solyc05g011870.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbC25332356g0001.1 protein AED:0.01 eAED:0.01 QI:88|1|0.5|1|0|0.5|2|0|96; (*GB) gi|225440360|ref|XP_002270444.1| (e_value=1e-37) PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera];; (*TAIR) AT5G02370.1 (e_value=2e-30) | Symbols: | ATP binding microtubule motor family protein | chr5:503444-506388 FORWARD LENGTH=628;; (*ITAG) Solyc09g010810.2.1 (e_value=3e-56) genomic_reference:SL2.40ch09 gene_region:4096964-4103593 transcript_region:SL2.40ch09:4096964..4103593- go_terms:GO:0003677,GO:0003777 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L7B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0003677,GO:0003777 NbS00011494g0009.1 protein AED:0.06 eAED:0.06 QI:715|0.81|0.91|1|0.90|0.91|12|295|1686; (*GB) gi|359472635|ref|XP_003631178.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: 1-phosphatidylinositol-3-phosphate 5-kinase-like [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=3e-63) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT1G71010.1 (e_value=0.0) | Symbols: FAB1C | FORMS APLOID AND BINUCLEATE CELLS 1C | chr1:26782839-26788712 FORWARD LENGTH=1648;; (*ITAG) Solyc04g007650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1324630-1333026 transcript_region:SL2.40ch04:1324630..1333026- go_terms:GO:0044267,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0044267,GO:0046488 NbS00011494g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|374; (*GB) gi|356530752|ref|XP_003533944.1| (e_value=2e-130) PREDICTED: uncharacterized protein LOC100793489 [Glycine max];; (*TAIR) AT2G01410.1 (e_value=3e-130) | Symbols: | NHL domain-containing protein | chr2:175209-176372 REVERSE LENGTH=387;; (*ITAG) Solyc04g007660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1354361-1355470 transcript_region:SL2.40ch04:1354361..1355470- functional_description:"SMP-30/Gluconolaconase/LRE domain protein (AHRD V1 ***- A5FD91_FLAJ1); contains Interpro domain(s) IPR013658 SMP-30/Gluconolaconase/LRE-like region "; NbS00011494g0007.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.33|1|1|6|0|230; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-22) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc00g212260.1.1 (e_value=1e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19159730-19164604 transcript_region:SL2.40ch00:19159730..19164604+ functional_description:"GH3 family protein (AHRD V1 *-*- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; NbS00046504g0015.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|1|0.66|0.5|4|0|560; (*GB) gi|356557461|ref|XP_003547034.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=3e-178) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc11g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53193873-53196270 transcript_region:SL2.40ch11:53193873..53196270- functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00046504g0013.1 protein AED:0.16 eAED:0.16 QI:138|0.84|0.75|1|0.73|0.8|20|185|760; (*GB) gi|225435112|ref|XP_002284524.1| (e_value=0.0) PREDICTED: E3 UFM1-protein ligase 1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|B9FM64|UFL1_ORYSJ (e_value=0.0) E3 UFM1-protein ligase 1 homolog OS=Oryza sativa subsp. japonica GN=Os05g0117600 PE=3 SV=1;; (*TAIR) AT3G46220.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611); Has 559 Blast hits to 533 proteins in 154 species: Archae - 3; Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50; Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:16979174-16983970 FORWARD LENGTH=804;; (*ITAG) Solyc11g072950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53186161-53193294 transcript_region:SL2.40ch11:53186161..53193294- go_terms:GO:0005515 functional_description:"E3 UFM1-protein ligase 1 homolog (AHRD V1 ***- UFL1_ARATH); contains Interpro domain(s) IPR018611 Protein of unknown function DUF2042 "; GO:0005515 NbS00046504g0014.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.84|0.92|0.58|0.76|13|820|682; (*GB) gi|75268416|sp|Q52JK6.1|VIP2_NICBE (e_value=0.0) RecName: Full=Probable NOT transcription complex subunit VIP2; AltName: Full=Protein VIRE2 INTERACTING PROTEIN2; Short=NbVIP2;; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=0.0) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*TAIR) AT1G07705.2 (e_value=0.0) | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2382090-2385856 FORWARD LENGTH=614;; (*ITAG) Solyc11g072940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53178457-53185286 transcript_region:SL2.40ch11:53178457..53185286+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00041717g0002.1 protein AED:0.02 eAED:0.04 QI:65|1|0.5|1|1|1|2|0|157; (*GB) gi|224062011|ref|XP_002300710.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g081390.2.1 (e_value=2e-24) genomic_reference:SL2.40ch04 gene_region:62982388-62984072 transcript_region:SL2.40ch04:62982388..62984072- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00024653g0007.1 protein AED:0.13 eAED:0.14 QI:209|0.92|0.85|1|0.61|0.57|14|265|362; (*GB) gi|224109848|ref|XP_002315332.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4QSC8|SGO1_MAIZE (e_value=3e-17) Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1;; (*TAIR) AT5G04320.2 (e_value=1e-29) | Symbols: | Shugoshin C terminus | chr5:1209613-1212376 FORWARD LENGTH=470;; (*ITAG) Solyc11g008090.1.1 (e_value=4e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2288710-2290634 transcript_region:SL2.40ch11:2288710..2290634- functional_description:"Shugoshin-1 (AHRD V1 ***- B6TQG1_MAIZE)"; NbS00024653g0008.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|74; (*GB) gi|57013900|ref|YP_173374.1| (e_value=4e-20) hypothetical protein NitaMp027 [Nicotiana tabacum]; NbS00007703g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|179; (*GB) gi|332322086|emb|CCA65978.1| (e_value=5e-14) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc11g056280.1.1 (e_value=3e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43083869-43084036 transcript_region:SL2.40ch11:43083869..43084036+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035803g0002.1 protein AED:0.15 eAED:0.15 QI:260|1|1|1|1|1|7|236|692; (*GB) gi|255564615|ref|XP_002523302.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=0.0) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT3G18750.3 (e_value=0.0) | Symbols: WNK6 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567;; (*ITAG) Solyc01g096170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79028423-79033644 transcript_region:SL2.40ch01:79028423..79033644+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00035803g0003.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|1|1|2|0|116; (*GB) gi|356522494|ref|XP_003529881.1| (e_value=2e-32) PREDICTED: protein yippee-like At4g27745-like [Glycine max];; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=2e-26) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=2e-27) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc01g096170.2.1 (e_value=4e-35) genomic_reference:SL2.40ch01 gene_region:79028423-79033644 transcript_region:SL2.40ch01:79028423..79033644+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00035803g0015.1 protein AED:0.12 eAED:0.15 QI:121|0.22|0.3|1|0.55|0.6|10|187|1641; (*GB) gi|225470962|ref|XP_002264541.1| (e_value=0.0) PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Vitis vinifera];; (*SWP) sp|Q9LNJ9|FKGP_ARATH (e_value=0.0) Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis thaliana GN=FKGP PE=1 SV=2;; (*TAIR) AT1G01220.1 (e_value=0.0) | Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91750-95552 FORWARD LENGTH=1055;; (*ITAG) Solyc01g096160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79020486-79027406 transcript_region:SL2.40ch01:79020486..79027406- go_terms:GO:0016310,GO:0005737 functional_description:"Predicted kinase (AHRD V1 *-*- Q2W8E8_MAGSA); contains Interpro domain(s) IPR012887 L-fucokinase "; GO:0016310,GO:0005737 NbS00038890g0005.1 protein AED:0.30 eAED:0.32 QI:0|0.75|0.6|1|0.5|0.8|5|0|114; (*GB) gi|224138464|ref|XP_002326609.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=3e-76) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=2e-77) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=2e-78) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbS00045418g0003.1 protein AED:0.27 eAED:0.34 QI:0|0.5|0.33|1|1|1|3|267|70; (*ITAG) Solyc11g070120.1.1 (e_value=3e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51731688-51736038 transcript_region:SL2.40ch11:51731688..51736038+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00022030g0001.1 protein AED:0.29 eAED:0.35 QI:233|0.5|0.66|1|0|0.33|3|0|339; (*GB) gi|224088059|ref|XP_002308310.1| (e_value=7e-79) predicted protein [Populus trichocarpa];; (*TAIR) AT3G24740.2 (e_value=1e-56) | Symbols: | Protein of unknown function (DUF1644) | chr3:9032397-9033461 FORWARD LENGTH=354;; (*ITAG) Solyc06g067970.1.1 (e_value=1e-145) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38517926-38518774 transcript_region:SL2.40ch06:38517926..38518774- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00026842g0006.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|84 NbS00026842g0010.1 protein AED:0.08 eAED:0.08 QI:540|1|1|1|1|1|9|302|527; (*GB) gi|189909329|gb|ACE60600.1| (e_value=0.0) mannan synthase [Coffea canephora];; (*SWP) sp|Q6UDF0|CSLA1_CYATE (e_value=0.0) Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=ManS PE=1 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00026842g0009.1 protein AED:0.24 eAED:0.24 QI:98|1|0.8|1|1|1|5|0|365; (*GB) gi|356570770|ref|XP_003553557.1| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100795652 [Glycine max];; (*TAIR) AT5G60800.1 (e_value=1e-31) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc09g008200.2.1 (e_value=2e-61) genomic_reference:SL2.40ch09 gene_region:1652980-1655416 transcript_region:SL2.40ch09:1652980..1655416- go_terms:GO:0005507 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q10RN8_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbC25294182g0003.1 protein AED:0.17 eAED:0.17 QI:31|1|0.6|1|1|1|5|0|213; (*GB) gi|76803519|gb|ABA55732.1| (e_value=4e-146) ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum];; (*SWP) sp|Q9FH76|ABAH3_ARATH (e_value=6e-125) Abscisic acid 8'-hydroxylase 3 OS=Arabidopsis thaliana GN=CYP707A3 PE=1 SV=1;; (*TAIR) AT5G45340.1 (e_value=5e-126) | Symbols: CYP707A3 | cytochrome P450, family 707, subfamily A, polypeptide 3 | chr5:18368977-18370909 REVERSE LENGTH=463;; (*ITAG) Solyc08g005610.2.1 (e_value=7e-149) genomic_reference:SL2.40ch08 gene_region:477231-479683 transcript_region:SL2.40ch08:477231..479683+ go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00006567g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|359485349|ref|XP_003633262.1| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100852705 [Vitis vinifera];; (*ITAG) Solyc07g045060.1.1 (e_value=4e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:55479705-55480016 transcript_region:SL2.40ch07:55479705..55480016+ go_terms:GO:0005516 functional_description:"Auxin responsive protein (AHRD V1 ***- Q75GP8_ORYSJ); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00032768g0001.1 protein AED:0.52 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|356517184|ref|XP_003527269.1| (e_value=2e-42) PREDICTED: xylem cysteine proteinase 2-like [Glycine max];; (*SWP) sp|O65493|XCP1_ARATH (e_value=2e-38) Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1;; (*TAIR) AT4G35350.1 (e_value=1e-39) | Symbols: XCP1 | xylem cysteine peptidase 1 | chr4:16810529-16811875 FORWARD LENGTH=355;; (*ITAG) Solyc12g094700.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63186285-63189004 transcript_region:SL2.40ch12:63186285..63189004+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00052623g0012.1 protein AED:0.11 eAED:0.11 QI:79|1|0.8|1|0.25|0.2|5|0|296; (*GB) gi|255568792|ref|XP_002525367.1| (e_value=6e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70480.1 (e_value=2e-82) | Symbols: | Domain of unknown function (DUF220) | chr1:26562304-26563608 FORWARD LENGTH=320;; (*ITAG) Solyc01g008010.2.1 (e_value=5e-134) genomic_reference:SL2.40ch01 gene_region:2180444-2185087 transcript_region:SL2.40ch01:2180444..2185087+ functional_description:"Os09g0327550 protein (Fragment) (AHRD V1 *-*- C7J753_ORYSJ); contains Interpro domain(s) IPR003863 Protein of unknown function DUF220 "; NbS00052623g0008.1 protein AED:0.17 eAED:0.17 QI:125|1|0.5|1|1|1|2|0|18 NbS00052623g0007.1 protein AED:0.24 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|416; (*GB) gi|334683127|emb|CBX87929.1| (e_value=0.0) equilibrative nucleoside transporter 1 [Solanum tuberosum];; (*SWP) sp|A1L272|S29A4_DANRE (e_value=1e-38) Equilibrative nucleoside transporter 4 OS=Danio rerio GN=slc29a4 PE=2 SV=1;; (*TAIR) AT1G70330.1 (e_value=0.0) | Symbols: ENT1,AT, ENT1 | equilibrative nucleotide transporter 1 | chr1:26502920-26504360 FORWARD LENGTH=450;; (*ITAG) Solyc01g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2185118-2189315 transcript_region:SL2.40ch01:2185118..2189315- go_terms:GO:0010174 functional_description:"Equilibrative nucleoside transporter 1 (AHRD V1 **** Q4W6L4_ORYSJ); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0010174 NbS00019560g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|122|182; (*GB) gi|225455388|ref|XP_002272899.1| (e_value=5e-64) PREDICTED: germin-like protein 11-1 [Vitis vinifera];; (*SWP) sp|Q2R352|GL111_ORYSJ (e_value=8e-52) Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1;; (*TAIR) AT5G61750.1 (e_value=1e-50) | Symbols: | RmlC-like cupins superfamily protein | chr5:24812804-24813436 REVERSE LENGTH=210;; (*ITAG) Solyc07g065330.2.1 (e_value=9e-101) genomic_reference:SL2.40ch07 gene_region:64364298-64365651 transcript_region:SL2.40ch07:64364298..64365651- go_terms:GO:0050162 functional_description:"Germin-like protein 15 (AHRD V1 ***- C7S8C9_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00019560g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|38350581|gb|AAR18403.1| (e_value=2e-140) serine acetyltransferase [Nicotiana plumbaginifolia];; (*SWP) sp|Q39218|SAT3_ARATH (e_value=1e-68) Serine acetyltransferase 3, mitochondrial OS=Arabidopsis thaliana GN=SAT3 PE=1 SV=3;; (*TAIR) AT3G13110.1 (e_value=9e-70) | Symbols: ATSERAT2;2, SAT-1, SAT-A, SAT3, SAT-M, SERAT2;2 | serine acetyltransferase 2;2 | chr3:4214939-4216114 REVERSE LENGTH=391;; (*ITAG) Solyc07g065340.1.1 (e_value=5e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64367108-64368103 transcript_region:SL2.40ch07:64367108..64368103- go_terms:GO:0009001 functional_description:"Serine acetyltransferase (AHRD V1 **** Q39533_CITLA); contains Interpro domain(s) IPR005881 Serine O-acetyltransferase "; GO:0009001 NbS00006859g0018.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0|1|0.66|0.75|4|0|312; (*GB) gi|225429448|ref|XP_002277081.1| (e_value=6e-126) PREDICTED: uncharacterized protein LOC100260976 [Vitis vinifera];; (*TAIR) AT4G32960.1 (e_value=1e-105) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:15908785-15910141 REVERSE LENGTH=264;; (*ITAG) Solyc12g095920.1.1 (e_value=1e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63360272-63364478 transcript_region:SL2.40ch12:63360272..63364478- functional_description:"BRCA1-A complex subunit MERIT40 (AHRD V1 ***- MRI40_XENTR)"; NbS00006859g0025.1 protein AED:0.12 eAED:0.13 QI:0|1|0.66|1|1|1|9|0|469; (*GB) gi|39748726|emb|CAE84598.1| (e_value=0.0) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=0.0) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51149160-51151397 transcript_region:SL2.40ch08:51149160..51151397+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00006859g0026.1 protein AED:0.13 eAED:0.13 QI:0|1|0.88|1|0.87|0.88|9|0|469; (*GB) gi|39748726|emb|CAE84598.1| (e_value=0.0) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49044|VPE_VICSA (e_value=0.0) Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1;; (*TAIR) AT4G32940.1 (e_value=4e-179) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51198895-51202956 transcript_region:SL2.40ch08:51198895..51202956+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00006859g0019.1 protein AED:0.11 eAED:0.16 QI:0|0.87|0.66|1|0.87|0.77|9|0|709; (*GB) gi|224141589|ref|XP_002324150.1| (e_value=2e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XGZ9|P2C72_ARATH (e_value=5e-86) Probable protein phosphatase 2C 72 OS=Arabidopsis thaliana GN=At5g26010 PE=2 SV=2;; (*TAIR) AT5G26010.1 (e_value=4e-87) | Symbols: | Protein phosphatase 2C family protein | chr5:9085512-9087372 REVERSE LENGTH=331;; (*ITAG) Solyc08g065500.1.1 (e_value=1e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:50841687-50843264 transcript_region:SL2.40ch08:50841687..50843264+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 *-** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00006859g0022.1 protein AED:0.53 eAED:0.52 QI:0|0.5|0.2|0.8|0.75|0.8|5|0|375; (*GB) gi|296081610|emb|CBI20615.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G20430.1 (e_value=2e-39) | Symbols: | CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:7121480-7123074 FORWARD LENGTH=265;; (*ITAG) Solyc04g080350.2.1 (e_value=3e-110) genomic_reference:SL2.40ch04 gene_region:62155165-62158474 transcript_region:SL2.40ch04:62155165..62158474+ functional_description:"Genomic DNA chromosome 3 P1 clone MQC12 (AHRD V1 ***- Q9LTP9_ARATH); contains Interpro domain(s) IPR019385 Phosphorylated adapter RNA export protein, RNA-binding domain "; NbS00006859g0027.1 protein AED:0.26 eAED:0.32 QI:0|0|0|1|0|0|4|0|152; (*ITAG) Solyc05g023850.1.1 (e_value=3e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29603236-29604099 transcript_region:SL2.40ch05:29603236..29604099- functional_description:"Gag-pol polyprotein (AHRD V1 ***- Q710T7_POPDE)"; NbS00004572g0010.1 protein AED:0.00 eAED:0.00 QI:658|1|0.5|1|1|1|2|0|658; (*GB) gi|147845950|emb|CAN82028.1| (e_value=0.0) hypothetical protein VITISV_000613 [Vitis vinifera];; (*SWP) sp|Q9ZU27|PPR76_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1;; (*TAIR) AT1G51965.1 (e_value=0.0) | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:19312078-19314145 REVERSE LENGTH=650;; (*ITAG) Solyc03g121110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63382273-63385549 transcript_region:SL2.40ch03:63382273..63385549- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00004572g0012.1 protein AED:0.18 eAED:0.18 QI:107|1|1|1|0.68|0.64|17|619|603; (*GB) gi|297743168|emb|CBI36035.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q48761|RADA_LISMO (e_value=1e-101) DNA repair protein RadA homolog OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=radA PE=3 SV=2;; (*TAIR) AT5G50340.1 (e_value=0.0) | Symbols: | ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases | chr5:20491635-20495830 REVERSE LENGTH=587;; (*ITAG) Solyc03g121120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63385722-63395284 transcript_region:SL2.40ch03:63385722..63395284- go_terms:GO:0008233 functional_description:"DNA repair protein radA (AHRD V1 ***- D4YAY4_BACTR); contains Interpro domain(s) IPR004504 DNA repair protein RadA "; GO:0008233 NbS00004572g0014.1 protein AED:0.04 eAED:0.07 QI:0|0.25|0.2|1|0.25|0.4|5|0|569; (*GB) gi|255549776|ref|XP_002515939.1| (e_value=6e-133) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=1e-59) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT1G52080.1 (e_value=4e-80) | Symbols: AR791 | actin binding protein family | chr1:19369788-19371862 FORWARD LENGTH=573;; (*ITAG) Solyc03g121140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63401284-63403745 transcript_region:SL2.40ch03:63401284..63403745+ go_terms:GO:0003779 functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; GO:0003779 NbS00012243g0006.1 protein AED:0.09 eAED:0.09 QI:216|0.66|0.75|1|1|1|4|238|124; (*GB) gi|118486587|gb|ABK95132.1| (e_value=7e-26) unknown [Populus trichocarpa];; (*TAIR) AT4G16770.1 (e_value=4e-21) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9434571-9437168 REVERSE LENGTH=325;; (*ITAG) Solyc06g060800.2.1 (e_value=2e-34) genomic_reference:SL2.40ch06 gene_region:35217666-35228843 transcript_region:SL2.40ch06:35217666..35228843- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase (AHRD V1 **-* D7FYW8_ECTSI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00012243g0009.1 protein AED:0.26 eAED:0.26 QI:1553|0.2|0.16|0.5|0.2|0|6|0|182; (*TAIR) AT2G30110.1 (e_value=2e-13) | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activating enzyme 1 | chr2:12852632-12857369 REVERSE LENGTH=1080;; (*ITAG) Solyc06g007320.2.1 (e_value=2e-13) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00012243g0010.1 protein AED:0.26 eAED:0.26 QI:424|0.85|0.87|1|0.85|0.87|8|415|256; (*GB) gi|359475282|ref|XP_003631634.1| (e_value=4e-95) PREDICTED: nogo-B receptor-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q96E22|NGBR_HUMAN (e_value=2e-12) Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=2 SV=1;; (*TAIR) AT1G11755.1 (e_value=3e-74) | Symbols: LEW1 | Undecaprenyl pyrophosphate synthetase family protein | chr1:3969987-3971488 REVERSE LENGTH=254;; (*ITAG) Solyc06g060810.2.1 (e_value=1e-126) genomic_reference:SL2.40ch06 gene_region:35229657-35235002 transcript_region:SL2.40ch06:35229657..35235002- go_terms:GO:0045547 functional_description:"Nogo-B receptor (AHRD V1 **-- B5X0Q7_SALSA); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00027708g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|228; (*GB) gi|24745940|dbj|BAC23048.1| (e_value=6e-113) citrate binding protein [Solanum tuberosum];; (*SWP) sp|Q39962|CBPR_HEVBR (e_value=4e-70) Citrate-binding protein OS=Hevea brasiliensis GN=CBP PE=1 SV=1;; (*ITAG) Solyc11g005480.1.1 (e_value=9e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:380298-381152 transcript_region:SL2.40ch11:380298..381152- functional_description:"Citrate binding protein (AHRD V1 ***- Q8H9C1_SOLTU); contains Interpro domain(s) IPR014895 Alginate lyase 2 "; NbS00027708g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|444; (*GB) gi|224126893|ref|XP_002329499.1| (e_value=2e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5Q0H2|FLA19_ARATH (e_value=1e-17) Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana GN=FLA19 PE=2 SV=2;; (*TAIR) AT1G15190.1 (e_value=8e-19) | Symbols: | Fasciclin-like arabinogalactan family protein | chr1:5227275-5228021 FORWARD LENGTH=248;; (*ITAG) Solyc11g005490.1.1 (e_value=2e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:383445-384278 transcript_region:SL2.40ch11:383445..384278+ functional_description:"Fasciclin-like arabinogalactan protein 18 (AHRD V1 *-*- A9XTM3_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00025818g0003.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|3|0|277; (*GB) gi|224067096|ref|XP_002302353.1| (e_value=4e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSL1|BH093_ARATH (e_value=5e-34) Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1 SV=1;; (*TAIR) AT5G65640.1 (e_value=4e-35) | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237137-26238904 FORWARD LENGTH=351;; (*ITAG) Solyc00g050430.2.1 (e_value=1e-74) genomic_reference:SL2.40ch00 gene_region:13663836-13666165 transcript_region:SL2.40ch00:13663836..13666165+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00060521g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|234|499; (*GB) gi|224142461|ref|XP_002324576.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL56|GLPT5_ARATH (e_value=0.0) Putative glycerol-3-phosphate transporter 5 OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=2;; (*TAIR) AT2G13100.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:5390206-5391764 FORWARD LENGTH=493;; (*ITAG) Solyc12g010440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3468203-3470212 transcript_region:SL2.40ch12:3468203..3470212+ go_terms:GO:0055085 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 ***- C4YY87_9RICK); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00000851g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.71|1|0.83|1|7|209|529; (*GB) gi|225451525|ref|XP_002274990.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265179 [Vitis vinifera];; (*TAIR) AT3G26950.1 (e_value=0.0) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9941202-9943411 REVERSE LENGTH=548;; (*ITAG) Solyc02g082210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40480822-40485201 transcript_region:SL2.40ch02:40480822..40485201- functional_description:"Genomic DNA chromosome 3 P1 clone MOJ10 (AHRD V1 ***- Q9LSE0_ARATH)"; NbS00000810g0017.1 protein AED:0.33 eAED:0.37 QI:276|0.66|0.5|1|0.33|0.75|4|0|166; (*GB) gi|356545685|ref|XP_003541267.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100793586 [Glycine max];; (*TAIR) AT2G18910.1 (e_value=2e-36) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:8193016-8194131 REVERSE LENGTH=131;; (*ITAG) Solyc07g006960.2.1 (e_value=1e-60) genomic_reference:SL2.40ch07 gene_region:1778497-1782064 transcript_region:SL2.40ch07:1778497..1782064- functional_description:"Actin associated protein (AHRD V1 *-*- B6SI05_MAIZE)"; NbS00000810g0014.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0.33|1|0|0.33|3|0|366; (*GB) gi|225446136|ref|XP_002270766.1| (e_value=6e-114) PREDICTED: uncharacterized protein LOC100256441 [Vitis vinifera];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=2e-61) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=1e-76) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc07g006750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1589096-1591496 transcript_region:SL2.40ch07:1589096..1591496- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000810g0015.1 protein AED:0.19 eAED:0.21 QI:0|0.28|0.12|1|1|1|8|0|992; (*GB) gi|225446134|ref|XP_002270697.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266729 [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=5e-47) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G57610.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr5:23325307-23329099 FORWARD LENGTH=1054;; (*ITAG) Solyc07g006760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1599263-1605156 transcript_region:SL2.40ch07:1599263..1605156- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0004712 NbS00000810g0016.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|1|2|0|129; (*GB) gi|225445996|ref|XP_002267083.1| (e_value=2e-51) PREDICTED: UPF0414 transmembrane protein C20orf30 homolog [Vitis vinifera];; (*TAIR) AT4G29850.1 (e_value=8e-50) | Symbols: | Eukaryotic protein of unknown function (DUF872) | chr4:14601818-14602874 REVERSE LENGTH=103;; (*ITAG) Solyc07g006950.2.1 (e_value=2e-62) genomic_reference:SL2.40ch07 gene_region:1775934-1776806 transcript_region:SL2.40ch07:1775934..1776806+ functional_description:"UPF0414 transmembrane protein C20orf30 homolog (AHRD V1 ***- B5X9I3_SALSA); contains Interpro domain(s) IPR008590 Uncharacterised protein family UPF0414 "; NbS00000810g0006.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|133; (*GB) gi|147856633|emb|CAN82456.1| (e_value=6e-58) hypothetical protein VITISV_010028 [Vitis vinifera];; (*TAIR) AT5G57610.1 (e_value=7e-52) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr5:23325307-23329099 FORWARD LENGTH=1054;; (*ITAG) Solyc07g006760.2.1 (e_value=1e-67) genomic_reference:SL2.40ch07 gene_region:1599263-1605156 transcript_region:SL2.40ch07:1599263..1605156- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0004712 NbS00000403g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|346; (*GB) gi|225458380|ref|XP_002281805.1| (e_value=3e-138) PREDICTED: uncharacterized protein LOC100262482 [Vitis vinifera];; (*SWP) sp|Q08BI9|MCU_DANRE (e_value=3e-12) Calcium uniporter protein, mitochondrial OS=Danio rerio GN=mcu PE=2 SV=1;; (*TAIR) AT2G23790.1 (e_value=2e-84) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc04g079910.2.1 (e_value=5e-169) genomic_reference:SL2.40ch04 gene_region:61818808-61820555 transcript_region:SL2.40ch04:61818808..61820555- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00000403g0011.1 protein AED:0.17 eAED:0.18 QI:37|0.71|0.77|1|0.76|0.86|22|411|813; (*GB) gi|225438527|ref|XP_002279361.1| (e_value=0.0) PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera];; (*SWP) sp|Q9XIK4|U202A_ARATH (e_value=0.0) UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2;; (*TAIR) AT1G10490.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00039924g0004.1 protein AED:0.23 eAED:0.23 QI:294|0.86|0.93|0.93|0.8|0.81|16|194|779; (*GB) gi|359477212|ref|XP_002273166.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258488 [Vitis vinifera];; (*TAIR) AT4G16180.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr4:9165365-9170323 REVERSE LENGTH=820;; (*ITAG) Solyc01g058730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:60842920-60852142 transcript_region:SL2.40ch01:60842920..60852142- functional_description:"Os03g0310500 protein (Fragment) (AHRD V1 *-*- Q0DSF8_ORYSJ)"; NbS00024799g0002.1 protein AED:0.41 eAED:0.41 QI:312|0.25|0.2|0.6|1|1|5|0|96 NbS00024799g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|216; (*GB) gi|224140297|ref|XP_002323519.1| (e_value=4e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09290.1 (e_value=1e-14) | Symbols: TAC1 | telomerase activator1 | chr3:2856141-2856659 FORWARD LENGTH=172;; (*ITAG) Solyc09g011110.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4451097-4451645 transcript_region:SL2.40ch09:4451097..4451645- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTZ1_ZEAMP); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00059319g0004.1 protein AED:0.08 eAED:0.08 QI:107|1|0.5|1|1|1|2|0|70; (*GB) gi|359495513|ref|XP_003635008.1| (e_value=2e-22) PREDICTED: DNA replication licensing factor MCM6 [Vitis vinifera];; (*TAIR) AT5G44635.1 (e_value=8e-21) | Symbols: MCM6 | minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831;; (*ITAG) Solyc02g082180.2.1 (e_value=2e-37) genomic_reference:SL2.40ch02 gene_region:40461974-40467518 transcript_region:SL2.40ch02:40461974..40467518+ go_terms:GO:0042802 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2TWS7_ASPOR); contains Interpro domain(s) IPR008049 MCM protein 6 "; GO:0042802 NbS00051367g0003.1 protein AED:0.21 eAED:0.26 QI:108|0|0.33|1|0|0|3|0|209; (*GB) gi|255553599|ref|XP_002517840.1| (e_value=2e-25) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZWA8|FLA9_ARATH (e_value=1e-21) Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1;; (*TAIR) AT1G03870.1 (e_value=8e-23) | Symbols: FLA9 | FASCICLIN-like arabinoogalactan 9 | chr1:982625-983368 REVERSE LENGTH=247;; (*ITAG) Solyc07g053540.1.1 (e_value=3e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59285266-59286009 transcript_region:SL2.40ch07:59285266..59286009+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 4 (AHRD V1 ***- A9XTK9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00034642g0001.1 protein AED:0.21 eAED:0.21 QI:545|0.88|1|1|1|1|10|183|498; (*GB) gi|225440554|ref|XP_002276280.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23823099 REVERSE LENGTH=489;; (*ITAG) Solyc09g011750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5045721-5050019 transcript_region:SL2.40ch09:5045721..5050019+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00034642g0002.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|199; (*GB) gi|224098210|ref|XP_002311136.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55230.1 (e_value=9e-58) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:20471824-20472744 FORWARD LENGTH=306;; (*ITAG) Solyc05g054780.1.1 (e_value=4e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63765664-63766338 transcript_region:SL2.40ch05:63765664..63766338- functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00034642g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.6|0.8|0.5|0.6|5|439|74; (*GB) gi|350537255|ref|NP_001234286.1| (e_value=4e-35) small zinc finger-like protein [Solanum lycopersicum];; (*SWP) sp|Q9ZW33|TIM10_ARATH (e_value=3e-25) Mitochondrial import inner membrane translocase subunit Tim10 OS=Arabidopsis thaliana GN=TIM10 PE=2 SV=1;; (*TAIR) AT2G29530.2 (e_value=2e-26) | Symbols: TIM10 | Tim10/DDP family zinc finger protein | chr2:12641026-12642243 REVERSE LENGTH=83;; (*ITAG) Solyc09g011760.2.1 (e_value=8e-38) genomic_reference:SL2.40ch09 gene_region:5050091-5055758 transcript_region:SL2.40ch09:5050091..5055758- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim10 (AHRD V1 ***- TIM10_ARATH); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbC24325668g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|86; (*SWP) sp|A0A382|NU5C_COFAR (e_value=3e-14) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Coffea arabica GN=ndhF PE=3 SV=1; NbS00007471g0009.1 protein AED:0.03 eAED:0.03 QI:32|1|1|1|0|0.5|2|12|145; (*GB) gi|255567699|ref|XP_002524828.1| (e_value=2e-45) bcr-associated protein, bap, putative [Ricinus communis];; (*TAIR) AT5G42570.1 (e_value=2e-40) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc10g053910.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:49688839-49689368 transcript_region:SL2.40ch10:49688839..49689368+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00052242g0004.1 protein AED:0.29 eAED:0.30 QI:0|0.77|0.6|1|0.33|0.4|10|0|355; (*GB) gi|296085488|emb|CBI29220.3| (e_value=3e-164) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8MS41|CCR4D_ARATH (e_value=1e-130) Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 PE=2 SV=1;; (*TAIR) AT1G31500.1 (e_value=2e-138) | Symbols: | DNAse I-like superfamily protein | chr1:11273821-11276534 REVERSE LENGTH=388;; (*ITAG) Solyc08g075010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56313651-56324720 transcript_region:SL2.40ch08:56313651..56324720- go_terms:GO:0016787 functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector (AHRD V1 **-- D6RLR7_COPC7); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0016787 NbS00035220g0205.1 protein AED:0.95 eAED:0.95 QI:0|0|0|0.25|1|1|4|0|86 NbS00012172g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|379056254|dbj|BAL68167.1| (e_value=8e-73) ethylene response factor #116 [Nicotiana tabacum];; (*SWP) sp|Q94ID6|ERF81_ARATH (e_value=1e-31) Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1;; (*TAIR) AT1G28360.1 (e_value=9e-33) | Symbols: ERF12, ATERF12 | ERF domain protein 12 | chr1:9951934-9952503 FORWARD LENGTH=189;; (*ITAG) Solyc02g077840.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37265510-37265974 transcript_region:SL2.40ch02:37265510..37265974- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 **** C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00014903g0003.1 protein AED:0.36 eAED:0.36 QI:359|0.66|0.75|0.75|0.66|1|4|0|195; (*GB) gi|359473668|ref|XP_002272777.2| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100261483 [Vitis vinifera];; (*TAIR) AT1G60670.1 (e_value=1e-36) | Symbols: | Protein of unknown function (DUF3755) | chr1:22344099-22346773 FORWARD LENGTH=201;; (*ITAG) Solyc04g008690.2.1 (e_value=8e-85) genomic_reference:SL2.40ch04 gene_region:2333617-2343002 transcript_region:SL2.40ch04:2333617..2343002- functional_description:"cDNA clone J013057D02 full insert sequence (AHRD V1 **-- B7EBX1_ORYSJ)"; NbS00014948g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|143; (*GB) gi|255547081|ref|XP_002514598.1| (e_value=1e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G15740.1 (e_value=1e-54) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc06g069380.2.1 (e_value=4e-75) genomic_reference:SL2.40ch06 gene_region:39519052-39522714 transcript_region:SL2.40ch06:39519052..39522714- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00027317g0008.1 protein AED:0.32 eAED:0.32 QI:353|0.6|0.5|1|0.6|0.5|6|0|254; (*GB) gi|60265618|gb|AAX15956.1| (e_value=1e-161) cinnamyl alcohol dehydrogenase 1 [Nicotiana tabacum];; (*SWP) sp|P51110|DFRA_VITVI (e_value=8e-48) Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1;; (*TAIR) AT5G19440.1 (e_value=2e-124) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326;; (*ITAG) Solyc01g008530.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:2630977-2641984 transcript_region:SL2.40ch01:2630977..2641984- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- B9HNY0_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00027317g0007.1 protein AED:0.22 eAED:0.22 QI:48|0.81|0.91|0.91|0.36|0.5|12|170|353; (*GB) gi|296082650|emb|CBI21655.3| (e_value=3e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q682D3|XRCC2_ARATH (e_value=1e-77) DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana GN=XRCC2 PE=2 SV=2;; (*TAIR) AT5G64520.2 (e_value=3e-79) | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair cross complementing 2 (XRCC2) | chr5:25788069-25790242 FORWARD LENGTH=342;; (*ITAG) Solyc01g008520.2.1 (e_value=5e-177) genomic_reference:SL2.40ch01 gene_region:2620843-2629758 transcript_region:SL2.40ch01:2620843..2629758+ functional_description:"DNA repair protein XRCC2 (AHRD V1 ***- XRCC2_HUMAN)"; NbS00027317g0002.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|82 NbS00014793g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.5|1|1|1|4|229|473; (*GB) gi|225428336|ref|XP_002283140.1| (e_value=0.0) PREDICTED: aminoacylase-1-like [Vitis vinifera];; (*SWP) sp|Q55DP8|ACY1_DICDI (e_value=2e-117) Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1;; (*TAIR) AT4G38220.1 (e_value=0.0) | Symbols: | Peptidase M20/M25/M40 family protein | chr4:17925251-17926919 FORWARD LENGTH=430;; (*ITAG) Solyc01g112280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90105382-90109100 transcript_region:SL2.40ch01:90105382..90109100- go_terms:GO:0004046 functional_description:"Succinyl-diaminopimelate desuccinylase (AHRD V1 **-- DAPE_MAGSA); contains Interpro domain(s) IPR010159 N-acyl-L-amino-acid amidohydrolase "; GO:0004046 NbS00009845g0001.1 protein AED:0.05 eAED:0.07 QI:8|0.5|0.66|1|0|0|3|96|211; (*GB) gi|225434972|ref|XP_002283955.1| (e_value=2e-48) PREDICTED: uncharacterized protein At3g17950 [Vitis vinifera];; (*TAIR) AT5G02440.1 (e_value=3e-11) | Symbols: | unknown protein; Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:531066-532725 FORWARD LENGTH=176;; (*ITAG) Solyc11g066010.1.1 (e_value=4e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:48730159-48733045 transcript_region:SL2.40ch11:48730159..48733045+ functional_description:"CM0545.320.nc protein (AHRD V1 ***- B0BLB0_LOTJA)"; NbS00025687g0002.1 protein AED:0.12 eAED:0.14 QI:0|0.25|0|1|0|0|5|0|359; (*GB) gi|225469542|ref|XP_002270331.1| (e_value=2e-111) PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=2e-99) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=1e-99) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=5e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00060954g0007.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.75|0.33|0.25|4|0|718; (*GB) gi|255552969|ref|XP_002517527.1| (e_value=0.0) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=0.0) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=0.0) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00008506g0008.1 protein AED:0.30 eAED:0.53 QI:0|0|0|1|0|0|3|0|210; (*GB) gi|791143|emb|CAA60171.1| (e_value=1e-89) ribosomal protein L5 [Solanum tuberosum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=4e-85) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=3e-81) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc07g040970.1.1 (e_value=5e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00008506g0007.1 protein AED:0.50 eAED:0.79 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=7e-33) Maturase [Medicago truncatula];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=4e-29) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*ITAG) ATMG01275.1 (e_value=2e-25) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325; NbS00009976g0004.1 protein AED:0.01 eAED:0.03 QI:47|1|0.5|1|0|0|2|0|244; (*GB) gi|255574145|ref|XP_002527988.1| (e_value=6e-115) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G31330.1 (e_value=1e-107) | Symbols: | Protein of unknown function, DUF599 | chr4:15202354-15203151 FORWARD LENGTH=239;; (*ITAG) Solyc08g006100.2.1 (e_value=6e-128) genomic_reference:SL2.40ch08 gene_region:845007-846530 transcript_region:SL2.40ch08:845007..846530+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00009976g0005.1 protein AED:0.08 eAED:0.08 QI:444|0.66|0.5|1|0.66|0.5|4|861|148; (*GB) gi|30678211|ref|NP_171696.2| (e_value=8e-80) peptidyl-prolyl cis-trans isomerase-like 3 [Arabidopsis thaliana];; (*SWP) sp|P0CP86|PPIL3_CRYNJ (e_value=2e-57) Peptidyl-prolyl cis-trans isomerase-like 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CYP10 PE=3 SV=1;; (*TAIR) AT1G01940.1 (e_value=2e-82) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:323082-324719 FORWARD LENGTH=160;; (*ITAG) Solyc08g006090.2.1 (e_value=1e-81) genomic_reference:SL2.40ch08 gene_region:833901-839601 transcript_region:SL2.40ch08:833901..839601+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9LPC7_ARATH); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00037492g0014.1 protein AED:0.00 eAED:0.00 QI:0|1|0.83|1|0.6|0.66|6|0|353; (*GB) gi|225452304|ref|XP_002272292.1| (e_value=0.0) PREDICTED: glucuronokinase 1 [Vitis vinifera];; (*SWP) sp|Q93ZC9|GLAK1_ARATH (e_value=0.0) Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1;; (*TAIR) AT3G01640.1 (e_value=0.0) | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362;; (*ITAG) Solyc02g093440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold "; GO:0004335 NbS00037492g0013.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.87|0.87|0.42|0.5|8|245|276; (*GB) gi|350540662|ref|NP_001233847.1| (e_value=3e-149) carbonic anhydrase [Solanum lycopersicum];; (*SWP) sp|P27141|CAHC_TOBAC (e_value=2e-131) Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G01500.3 (e_value=2e-117) | Symbols: CA1 | carbonic anhydrase 1 | chr3:195173-197873 REVERSE LENGTH=336;; (*ITAG) Solyc02g067750.2.1 (e_value=5e-152) genomic_reference:SL2.40ch02 gene_region:32439990-32442359 transcript_region:SL2.40ch02:32439990..32442359- go_terms:GO:0005515,GO:0004089 functional_description:"Carbonic anhydrase (AHRD V1 ***- B1VK36_SOLLC); contains Interpro domain(s) IPR001765 Carbonic anhydrase "; GO:0005515,GO:0004089 NbS00037492g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.84|0.78|0.85|0.69|0.85|14|0|433; (*GB) gi|224140869|ref|XP_002323801.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTY6|UKL5_ARATH (e_value=0.0) Uridine kinase-like protein 5 OS=Arabidopsis thaliana GN=UKL5 PE=2 SV=1;; (*TAIR) AT3G27440.1 (e_value=0.0) | Symbols: UKL5 | uridine kinase-like 5 | chr3:10155555-10157931 FORWARD LENGTH=465;; (*ITAG) Solyc02g067880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32548167-32551632 transcript_region:SL2.40ch02:32548167..32551632- go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9IJL7_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00033141g0006.1 protein AED:0.24 eAED:0.26 QI:159|0.86|0.87|1|0.8|0.75|16|0|831; (*GB) gi|296088557|emb|CBI37548.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O19922|FTSH_CYACA (e_value=1e-81) ATP-dependent zinc metalloprotease FtsH OS=Cyanidium caldarium GN=ftsH PE=3 SV=1;; (*TAIR) AT5G64580.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr5:25817391-25821465 REVERSE LENGTH=855;; (*ITAG) Solyc04g063360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54590862-54606336 transcript_region:SL2.40ch04:54590862..54606336+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_CYACA); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00059835g0004.1 protein AED:0.17 eAED:0.33 QI:97|0|0.66|1|0.5|0.33|3|516|160; (*GB) gi|76573299|gb|ABA46754.1| (e_value=3e-39) unknown [Solanum tuberosum];; (*SWP) sp|Q0IHH1|NAA30_XENLA (e_value=2e-13) N-alpha-acetyltransferase 30 OS=Xenopus laevis GN=naa30 PE=2 SV=1;; (*TAIR) AT2G38130.2 (e_value=4e-22) | Symbols: ATMAK3 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:15978639-15980145 REVERSE LENGTH=190;; (*ITAG) Solyc09g091980.2.1 (e_value=3e-40) genomic_reference:SL2.40ch09 gene_region:66517949-66522458 transcript_region:SL2.40ch09:66517949..66522458- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 30, NatC catalytic subunit (AHRD V1 **** NAA30_DROME); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00010028g0011.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0.33|0.5|4|0|607; (*GB) gi|350535491|ref|NP_001234709.1| (e_value=0.0) peptide N-glycanase precursor [Solanum lycopersicum];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=0.0) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=0.0) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc10g007330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1729750-1731516 transcript_region:SL2.40ch10:1729750..1731516- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- C0NA72_AJECG)"; NbS00010028g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.62|0.66|1|0.37|0.44|9|271|452; (*GB) gi|225461677|ref|XP_002285458.1| (e_value=0.0) PREDICTED: rab3 GTPase-activating protein non-catalytic subunit [Vitis vinifera];; (*SWP) sp|Q8BMG7|RBGPR_MOUSE (e_value=2e-15) Rab3 GTPase-activating protein non-catalytic subunit OS=Mus musculus GN=Rab3gap2 PE=1 SV=2;; (*TAIR) AT3G14910.1 (e_value=0.0) | Symbols: | unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr3:5015432-5017566 FORWARD LENGTH=455;; (*ITAG) Solyc07g062450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62408537-62412999 transcript_region:SL2.40ch07:62408537..62412999+ functional_description:"RAB3 GTPase activating protein subunit 2 (Non-catalytic) (AHRD V1 ***- A6H8V0_HUMAN)"; NbS00030395g0002.1 protein AED:0.12 eAED:0.13 QI:300|0|0.5|1|0|0.5|2|0|1008; (*GB) gi|255541548|ref|XP_002511838.1| (e_value=0.0) synaptotagmin, putative [Ricinus communis];; (*TAIR) AT4G11610.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc01g094410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77672093-77675555 transcript_region:SL2.40ch01:77672093..77675555+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00030395g0009.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|375; (*GB) gi|357470793|ref|XP_003605681.1| (e_value=2e-171) Ripening-related protein [Medicago truncatula];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=4e-57) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc01g094450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:77686184-77688875 transcript_region:SL2.40ch01:77686184..77688875+ functional_description:"Ripening-related protein 3 (AHRD V1 *--- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00003136g0009.1 protein AED:0.27 eAED:0.27 QI:119|1|0.90|1|1|1|11|0|370; (*GB) gi|225448631|ref|XP_002274357.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262145 [Vitis vinifera];; (*TAIR) AT3G10970.1 (e_value=5e-179) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:3433276-3436077 REVERSE LENGTH=365;; (*ITAG) Solyc06g050310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29410401-29418396 transcript_region:SL2.40ch06:29410401..29418396- go_terms:GO:0008152 functional_description:"Phosphatase/phosphohexomutase HAD superfamily (AHRD V1 **-- B3DWY3_METI4); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00018806g0004.1 protein AED:0.21 eAED:0.21 QI:319|0.66|0.75|1|1|1|4|226|321; (*GB) gi|19698450|gb|AAL93153.1|AF485267_1 (e_value=2e-174) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=3e-153) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=3e-154) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc01g104860.2.1 (e_value=3e-180) genomic_reference:SL2.40ch01 gene_region:84946050-84948029 transcript_region:SL2.40ch01:84946050..84948029+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00022671g0017.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0.66|0.66|0|0.66|3|0|113; (*GB) gi|348659075|gb|AEP82775.1| (e_value=2e-42) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=4e-27) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*ITAG) Solyc04g054380.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:51572819-51575927 transcript_region:SL2.40ch04:51572819..51575927- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00022671g0002.1 protein AED:0.49 eAED:0.49 QI:292|1|0.5|1|0|0.5|2|230|123; (*GB) gi|296082523|emb|CBI21528.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G21860.1 (e_value=1e-21) | Symbols: | violaxanthin de-epoxidase-related | chr2:9318333-9319990 REVERSE LENGTH=522;; (*ITAG) Solyc04g051610.2.1 (e_value=6e-40) genomic_reference:SL2.40ch04 gene_region:50055286-50057216 transcript_region:SL2.40ch04:50055286..50057216- functional_description:"Violaxanthin de-epoxidase-related protein (AHRD V1 ***- A8J136_CHLRE)"; NbS00022671g0012.1 protein AED:0.22 eAED:0.22 QI:73|1|1|1|0.76|0.85|14|125|530; (*GB) gi|296082524|emb|CBI21529.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54E29|THG1_DICDI (e_value=1e-70) Probable tRNA(His) guanylyltransferase OS=Dictyostelium discoideum GN=thg1 PE=3 SV=1;; (*TAIR) AT2G31580.1 (e_value=0.0) | Symbols: | tRNAHis guanylyltransferase | chr2:13441137-13445837 REVERSE LENGTH=567;; (*ITAG) Solyc04g051600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50039582-50055249 transcript_region:SL2.40ch04:50039582..50055249+ go_terms:GO:0005515,GO:0008193 functional_description:"tRNA(His) guanylyltransferase (AHRD V1 *-** C1GHL3_PARBD); contains Interpro domain(s) IPR007537 tRNAHis guanylyltransferase "; GO:0005515,GO:0008193 NbS00022671g0015.1 protein AED:0.23 eAED:0.25 QI:5|0.25|0.2|1|0|0|5|0|254; (*GB) gi|348659075|gb|AEP82775.1| (e_value=3e-75) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=3e-53) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT1G70080.1 (e_value=2e-24) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:26394669-26397565 REVERSE LENGTH=611;; (*ITAG) Solyc04g051620.1.1 (e_value=3e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50057599-50060555 transcript_region:SL2.40ch04:50057599..50060555- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00022671g0001.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|348659075|gb|AEP82775.1| (e_value=2e-67) terpene synthase [Solanum lycopersicum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=2e-40) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=3e-28) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc04g051620.1.1 (e_value=9e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50057599-50060555 transcript_region:SL2.40ch04:50057599..50060555- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00004170g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|190 NbS00001595g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.88|0.8|1|1|1|10|221|356; (*GB) gi|225426146|ref|XP_002278325.1| (e_value=4e-100) PREDICTED: uncharacterized protein LOC100246733 isoform 1 [Vitis vinifera];; (*TAIR) AT1G63980.2 (e_value=1e-77) | Symbols: | D111/G-patch domain-containing protein | chr1:23740646-23743054 FORWARD LENGTH=389;; (*ITAG) Solyc08g081580.2.1 (e_value=2e-174) genomic_reference:SL2.40ch08 gene_region:61757506-61762501 transcript_region:SL2.40ch08:61757506..61762501+ go_terms:GO:0005622 functional_description:"Pin2-interacting protein X1 (AHRD V1 *--- C1BXV6_ESOLU); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00001595g0016.1 protein AED:0.27 eAED:0.32 QI:11|0.57|0.37|1|0.42|0.37|8|0|232; (*GB) gi|30696943|ref|NP_176582.2| (e_value=1e-122) meiotic recombination protein SPO11-2 [Arabidopsis thaliana];; (*SWP) sp|Q9M4A1|SPO12_ARATH (e_value=3e-124) Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana GN=SPO11-2 PE=1 SV=1;; (*TAIR) AT1G63990.1 (e_value=2e-125) | Symbols: SPO11-2 | sporulation 11-2 | chr1:23743323-23745351 REVERSE LENGTH=383;; (*ITAG) Solyc08g081590.1.1 (e_value=5e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61763619-61765821 transcript_region:SL2.40ch08:61763619..61765821- go_terms:GO:0003918 functional_description:"DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** D3S4S1_METSF); contains Interpro domain(s) IPR002815 Spo11/DNA topoisomerase VI, subunit A "; GO:0003918 NbS00001595g0001.1 protein AED:0.16 eAED:0.44 QI:72|1|0.5|1|0|0.5|2|0|85 NbS00001595g0014.1 protein AED:0.26 eAED:0.35 QI:0|0|0|1|0|0|4|0|230; (*GB) gi|225426142|ref|XP_002278221.1| (e_value=8e-34) PREDICTED: WRKY transcription factor 22-like [Vitis vinifera];; (*SWP) sp|Q9SUS1|WRK29_ARATH (e_value=7e-26) Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1;; (*TAIR) AT4G23550.1 (e_value=5e-27) | Symbols: WRKY29, ATWRKY29 | WRKY family transcription factor | chr4:12291831-12293088 FORWARD LENGTH=304;; (*ITAG) Solyc08g081610.2.1 (e_value=1e-72) genomic_reference:SL2.40ch08 gene_region:61773941-61776031 transcript_region:SL2.40ch08:61773941..61776031+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00039094g0006.1 protein AED:0.23 eAED:0.23 QI:79|1|0.81|1|0.8|0.81|11|0|430; (*GB) gi|356565950|ref|XP_003551198.1| (e_value=1e-84) PREDICTED: ubiquitin-like-specific protease 1D-like [Glycine max];; (*SWP) sp|Q2PS26|ULP1D_ARATH (e_value=5e-65) Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1;; (*TAIR) AT1G60220.1 (e_value=4e-66) | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1:22208332-22211910 FORWARD LENGTH=584;; (*ITAG) Solyc05g005630.2.1 (e_value=2e-178) genomic_reference:SL2.40ch05 gene_region:440809-452678 transcript_region:SL2.40ch05:440809..452678+ go_terms:GO:0016929 functional_description:"Sentrin/SUMO-specific protease 15 (AHRD V1 *-** Q6IE03_MOUSE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbS00043614g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|0.75|1|1|4|0|236; (*GB) gi|225462507|ref|XP_002269087.1| (e_value=5e-75) PREDICTED: protein SRG1 [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=5e-66) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=4e-67) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071490.2.1 (e_value=9e-111) genomic_reference:SL2.40ch02 gene_region:35483359-35485607 transcript_region:SL2.40ch02:35483359..35485607- go_terms:GO:0051213 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0051213 NbS00029547g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|147811934|emb|CAN72574.1| (e_value=3e-78) hypothetical protein VITISV_036367 [Vitis vinifera];; (*SWP) sp|Q39237|TGA1_ARATH (e_value=2e-16) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT3G14880.2 (e_value=2e-61) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:5006565-5007689 FORWARD LENGTH=237;; (*ITAG) Solyc07g062380.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62370217-62371096 transcript_region:SL2.40ch07:62370217..62371096+ functional_description:"BZIP transcription factor (AHRD V1 ***- Q8W5R8_ORYSA)"; NbS00061004g0005.1 protein AED:0.24 eAED:0.24 QI:213|0.87|0.77|1|0.62|0.44|9|265|312; (*GB) gi|225423905|ref|XP_002281785.1| (e_value=7e-140) PREDICTED: uncharacterized protein LOC100247534 [Vitis vinifera];; (*TAIR) AT1G29700.1 (e_value=1e-122) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:10385196-10386906 REVERSE LENGTH=350;; (*ITAG) Solyc03g111700.2.1 (e_value=3e-158) genomic_reference:SL2.40ch03 gene_region:56405682-56409087 transcript_region:SL2.40ch03:56405682..56409087+ functional_description:"Inactivated Zn-dependent hydrolase of the beta-lactamase fold (AHRD V1 ***- B5ILK8_9CHRO)"; NbS00036852g0003.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|664; (*GB) gi|225425194|ref|XP_002264953.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259218 [Vitis vinifera];; (*SWP) sp|O35250|EXOC7_MOUSE (e_value=6e-20) Exocyst complex component 7 OS=Mus musculus GN=Exoc7 PE=1 SV=2;; (*TAIR) AT5G13150.1 (e_value=0.0) | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo70 family protein C1 | chr5:4172969-4174930 REVERSE LENGTH=653;; (*ITAG) Solyc01g009880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4413095-4415237 transcript_region:SL2.40ch01:4413095..4415237+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00036852g0018.1 protein AED:0.24 eAED:0.29 QI:0|0|0|0.83|0.63|0.5|12|0|411; (*GB) gi|356511518|ref|XP_003524472.1| (e_value=7e-116) PREDICTED: uncharacterized protein LOC100786679 [Glycine max];; (*SWP) sp|Q8BMD7|MORC4_MOUSE (e_value=1e-15) MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2;; (*TAIR) AT5G50780.1 (e_value=6e-103) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc01g009920.1.1 (e_value=3e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:4490206-4495395 transcript_region:SL2.40ch01:4490206..4495395- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00036852g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|225425184|ref|XP_002264542.1| (e_value=2e-51) PREDICTED: glutaredoxin-C1-like [Vitis vinifera];; (*SWP) sp|Q6K609|GRXC3_ORYSJ (e_value=2e-42) Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1;; (*TAIR) AT5G14070.1 (e_value=1e-39) | Symbols: ROXY2 | Thioredoxin superfamily protein | chr5:4541915-4542337 FORWARD LENGTH=140;; (*ITAG) Solyc01g009890.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:4424607-4424999 transcript_region:SL2.40ch01:4424607..4424999+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9GZC7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00036852g0002.1 protein AED:0.12 eAED:0.14 QI:0|0.85|0.62|1|1|1|8|0|381; (*GB) gi|224053531|ref|XP_002297859.1| (e_value=1e-159) predicted protein [Populus trichocarpa];; (*SWP) sp|Q02979|GDE1_YEAST (e_value=6e-42) Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1;; (*TAIR) AT3G02040.1 (e_value=2e-143) | Symbols: SRG3 | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361;; (*ITAG) Solyc01g009870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4404419-4408651 transcript_region:SL2.40ch01:4404419..4408651- go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphodiester phosphodiesterase GDE1 (AHRD V1 ***- B2WNF5_PYRTR); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase "; GO:0006629,GO:0006071 NbS00036852g0017.1 protein AED:0.54 eAED:0.85 QI:0|0|0|0.4|0.75|0.8|5|0|159 NbS00048640g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.87|1|0.71|0.87|8|304|357; (*GB) gi|225455930|ref|XP_002276201.1| (e_value=5e-98) PREDICTED: uncharacterized protein LOC100259501 [Vitis vinifera];; (*TAIR) AT1G50910.1 (e_value=1e-58) | Symbols: | unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). | chr1:18867083-18869839 REVERSE LENGTH=500;; (*ITAG) Solyc07g064300.2.1 (e_value=1e-171) genomic_reference:SL2.40ch07 gene_region:63733504-63738297 transcript_region:SL2.40ch07:63733504..63738297+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048640g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|255538578|ref|XP_002510354.1| (e_value=8e-141) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=4e-128) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=3e-129) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc07g064310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63738696-63739817 transcript_region:SL2.40ch07:63738696..63739817- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00014735g0030.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|0.5|2|0|200; (*GB) gi|2493046|sp|Q40089.1|ATP4_IPOBA (e_value=6e-129) RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor;; (*SWP) sp|Q40089|ATP4_IPOBA (e_value=2e-130) ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G47030.1 (e_value=4e-108) | Symbols: | ATPase, F1 complex, delta/epsilon subunit | chr5:19090384-19092034 FORWARD LENGTH=203;; (*ITAG) Solyc03g095190.2.1 (e_value=7e-129) genomic_reference:SL2.40ch03 gene_region:49598390-49602085 transcript_region:SL2.40ch03:49598390..49602085- go_terms:GO:0008270,GO:0016887 functional_description:"ATP synthase epsilon chain (AHRD V1 ***- A3UHR9_9RHOB); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0008270,GO:0016887 NbS00014735g0031.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.44|0.88|0.5|0.66|9|20|348; (*GB) gi|12229785|sp|O04937.1|DHEA_NICPL (e_value=0.0) RecName: Full=Glutamate dehydrogenase A; Short=GDH A;; (*SWP) sp|O04937|DHEA_NICPL (e_value=0.0) Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1;; (*TAIR) AT5G07440.2 (e_value=1e-179) | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2356153-2358012 FORWARD LENGTH=411;; (*ITAG) Solyc03g094010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49163343-49166873 transcript_region:SL2.40ch03:49163343..49166873- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q94IA5_BRANA); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00014735g0022.1 protein AED:0.27 eAED:0.32 QI:0|0.8|0.5|1|0.8|0.83|6|0|297; (*GB) gi|77999259|gb|ABB16976.1| (e_value=1e-163) GTP-binding-like protein [Solanum tuberosum];; (*SWP) sp|Q38906|TOC34_ARATH (e_value=3e-129) Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2;; (*TAIR) AT5G05000.1 (e_value=3e-130) | Symbols: TOC34, ATTOC34, OEP34 | translocon at the outer envelope membrane of chloroplasts 34 | chr5:1474262-1475772 REVERSE LENGTH=313;; (*ITAG) Solyc05g052160.2.1 (e_value=1e-164) genomic_reference:SL2.40ch05 gene_region:61599303-61602074 transcript_region:SL2.40ch05:61599303..61602074- go_terms:GO:0005525,GO:0003924 functional_description:"Translocase of chloroplast 34 (AHRD V1 **-- B6TBT7_MAIZE); contains Interpro domain(s) IPR005688 Chloroplast protein import component Toc34 "; GO:0005525,GO:0003924 NbS00014735g0028.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.4|1|0.5|0.4|5|0|360; (*GB) gi|269996495|gb|ACZ57582.1| (e_value=4e-141) Ole e 11.0101 allergen precursor [Olea europaea];; (*SWP) sp|Q84WM7|PPME1_ARATH (e_value=4e-129) Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1;; (*TAIR) AT1G69940.1 (e_value=3e-130) | Symbols: ATPPME1, PPME1 | Pectin lyase-like superfamily protein | chr1:26343549-26344971 REVERSE LENGTH=361;; (*ITAG) Solyc05g052110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61574729-61579471 transcript_region:SL2.40ch05:61574729..61579471- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8VPP5_OLEEU); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00014735g0033.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.75|1|0.66|0.75|4|0|310; (*GB) gi|225454952|ref|XP_002280421.1| (e_value=2e-136) PREDICTED: metacaspase-1 [Vitis vinifera];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=2e-122) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=2e-123) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc05g052130.2.1 (e_value=2e-156) genomic_reference:SL2.40ch05 gene_region:61588398-61590820 transcript_region:SL2.40ch05:61588398..61590820+ go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00014735g0025.1 protein AED:0.42 eAED:0.42 QI:0|0|0.33|0.66|0.5|0.66|3|116|200 NbS00014735g0034.1 protein AED:0.14 eAED:0.23 QI:0|0|0|1|0|0|5|0|243; (*GB) gi|255539965|ref|XP_002511047.1| (e_value=1e-80) caspase, putative [Ricinus communis];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=2e-75) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=2e-76) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc05g052130.2.1 (e_value=6e-90) genomic_reference:SL2.40ch05 gene_region:61588398-61590820 transcript_region:SL2.40ch05:61588398..61590820+ go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00025223g0019.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.57|1|0.83|0.71|7|0|899; (*GB) gi|225440346|ref|XP_002270206.1| (e_value=0.0) PREDICTED: WD repeat-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=1e-52) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT2G37670.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:15797384-15800536 REVERSE LENGTH=903;; (*ITAG) Solyc10g086430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64577978-64581524 transcript_region:SL2.40ch10:64577978..64581524+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00025223g0018.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.6|0.75|0.6|5|0|591; (*GB) gi|108864706|gb|ABG22609.1| (e_value=0.0) Heat shock cognate 70 kDa protein, putative, expressed [Oryza sativa Japonica Group];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT5G02500.1 (e_value=0.0) | Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651;; (*ITAG) Solyc10g086410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:64561395-64564764 transcript_region:SL2.40ch10:64561395..64564764+ go_terms:GO:0051082 functional_description:"Heat shock protein 70-3 (AHRD V1 ***- Q67BD0_TOBAC); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbS00025223g0014.1 protein AED:0.37 eAED:0.37 QI:0|1|0.33|1|1|0.66|3|0|136; (*GB) gi|51490663|emb|CAG26902.1| (e_value=3e-63) ALY protein [Nicotiana benthamiana];; (*SWP) sp|Q86V81|THOC4_HUMAN (e_value=3e-16) THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3;; (*TAIR) AT5G59950.2 (e_value=2e-35) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140629-24141504 FORWARD LENGTH=178;; (*ITAG) Solyc10g086400.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00025223g0001.1 protein AED:0.06 eAED:0.07 QI:0|1|0.5|1|0|0|2|361|452; (*GB) gi|11611667|gb|AAG39002.1|AF213399_1 (e_value=0.0) SLT1 protein [Nicotiana tabacum];; (*TAIR) AT2G37570.1 (e_value=0.0) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc10g086420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64566624-64568126 transcript_region:SL2.40ch10:64566624..64568126- go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0006508 NbS00026830g0003.1 protein AED:0.04 eAED:0.08 QI:0|0|0|1|1|1|2|0|316; (*ITAG) Solyc04g077960.1.1 (e_value=1e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:60414629-60416069 transcript_region:SL2.40ch04:60414629..60416069- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B5AEK3_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00026830g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|539; (*GB) gi|297738882|emb|CBI28127.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93YV6|2A5I_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1;; (*TAIR) AT5G25510.1 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr5:8882728-8884325 REVERSE LENGTH=500;; (*ITAG) Solyc12g006920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1339136-1341924 transcript_region:SL2.40ch12:1339136..1341924- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00010212g0011.1 protein AED:0.14 eAED:0.14 QI:287|1|1|1|0.5|0.33|3|230|322; (*GB) gi|225467167|ref|XP_002269291.1| (e_value=3e-153) PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=1e-101) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=9e-103) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc11g009050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3176495-3178519 transcript_region:SL2.40ch11:3176495..3178519+ functional_description:"F-box protein-like (AHRD V1 ***- Q67X80_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00010212g0010.1 protein AED:0.19 eAED:0.19 QI:163|0.8|0.83|1|1|1|6|416|193; (*GB) gi|224081120|ref|XP_002306300.1| (e_value=4e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=1e-29) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G65260.1 (e_value=3e-81) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc11g009090.1.1 (e_value=1e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3204621-3209644 transcript_region:SL2.40ch11:3204621..3209644- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00010212g0012.1 protein AED:0.19 eAED:0.19 QI:259|0.5|0.33|1|0.5|0|3|0|132; (*GB) gi|296085645|emb|CBI29444.3| (e_value=8e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFT5|EPFL1_ARATH (e_value=9e-16) EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana GN=EPFL1 PE=2 SV=1;; (*TAIR) AT5G10310.1 (e_value=7e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3241666-3242127 REVERSE LENGTH=122;; (*ITAG) Solyc11g009040.1.1 (e_value=9e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3166921-3168358 transcript_region:SL2.40ch11:3166921..3168358- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 1 (AHRD V1 *-*- EPFL1_ARATH)"; NbS00024478g0004.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|414; (*GB) gi|225433306|ref|XP_002285524.1| (e_value=7e-22) PREDICTED: uncharacterized protein LOC100263152 [Vitis vinifera];; (*TAIR) AT5G05210.2 (e_value=5e-15) | Symbols: | Surfeit locus protein 6 | chr5:1548398-1549534 FORWARD LENGTH=378;; (*ITAG) Solyc02g082130.1.1 (e_value=4e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40430556-40431629 transcript_region:SL2.40ch02:40430556..40431629- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007019 Surfeit locus 6 "; NbS00024478g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|1|1|5|952|403; (*GB) gi|225424952|ref|XP_002263612.1| (e_value=5e-175) PREDICTED: uncharacterized protein LOC100256507 [Vitis vinifera];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=4e-50) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G44680.1 (e_value=3e-143) | Symbols: | DNA glycosylase superfamily protein | chr5:18024461-18025893 REVERSE LENGTH=353;; (*ITAG) Solyc02g082120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40419675-40422095 transcript_region:SL2.40ch02:40419675..40422095+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6TPB7_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00008175g0101.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|132 NbS00008175g0102.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|135 NbS00008175g0107.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|74 NbS00008175g0109.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|0.33|0.5|4|0|157 NbS00009119g0012.1 protein AED:0.00 eAED:0.00 QI:123|1|1|1|1|1|2|420|92; (*GB) gi|356512369|ref|XP_003524892.1| (e_value=9e-41) PREDICTED: probable signal peptidase complex subunit 1-like [Glycine max];; (*SWP) sp|Q944J0|SPCS1_ARATH (e_value=3e-35) Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1;; (*TAIR) AT4G40042.1 (e_value=2e-38) | Symbols: | Microsomal signal peptidase 12 kDa subunit (SPC12) | chr4:18559289-18559570 FORWARD LENGTH=93;; (*ITAG) Solyc03g005740.1.1 (e_value=4e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:519948-520190 transcript_region:SL2.40ch03:519948..520190- go_terms:GO:0043022 functional_description:"Signal peptidase complex subunit 1 (AHRD V1 ***- B6SJA3_MAIZE); contains Interpro domain(s) IPR009542 Microsomal signal peptidase 12 kDa subunit "; GO:0043022 NbS00009119g0010.1 protein AED:0.25 eAED:0.28 QI:268|0.64|0.66|0.93|0.78|0.8|15|289|608; (*GB) gi|255574875|ref|XP_002528344.1| (e_value=0.0) 3-isopropylmalate dehydratase, putative [Ricinus communis];; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=0.0) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=0.0) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00009119g0015.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|600; (*GB) gi|225433273|ref|XP_002282144.1| (e_value=5e-107) PREDICTED: uncharacterized protein LOC100256206 [Vitis vinifera];; (*TAIR) AT2G33320.1 (e_value=1e-66) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr2:14119526-14121334 REVERSE LENGTH=602;; (*ITAG) Solyc12g096970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64007906-64009952 transcript_region:SL2.40ch12:64007906..64009952+ functional_description:"C2 domain-containing protein (AHRD V1 *--- D7LFS6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00012062g0001.1 protein AED:0.30 eAED:0.30 QI:235|1|1|1|0.6|0.16|6|134|117; (*GB) gi|225444037|ref|XP_002282043.1| (e_value=4e-25) PREDICTED: nuclear transcription factor Y subunit A-7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84JP1|NFYA7_ARATH (e_value=5e-20) Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1;; (*TAIR) AT1G30500.2 (e_value=4e-21) | Symbols: NF-YA7 | nuclear factor Y, subunit A7 | chr1:10804736-10805896 REVERSE LENGTH=190;; (*ITAG) Solyc02g069860.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:34253995-34260017 transcript_region:SL2.40ch02:34253995..34260017- go_terms:GO:0016566 functional_description:"Nuclear transcription factor Y subunit A-7 (AHRD V1 ***- B6TY54_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0016566 NbS00003258g0001.1 protein AED:0.30 eAED:0.32 QI:0|0.88|0.8|1|1|1|10|441|490; (*GB) gi|255561152|ref|XP_002521588.1| (e_value=0.0) amine oxidase, putative [Ricinus communis];; (*SWP) sp|Q9SKX5|PAO2_ARATH (e_value=0.0) Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1;; (*TAIR) AT2G43020.1 (e_value=0.0) | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 | chr2:17891945-17894440 FORWARD LENGTH=490;; (*ITAG) Solyc07g043590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54852900-54859105 transcript_region:SL2.40ch07:54852900..54859105+ go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00025316g0002.1 protein AED:0.13 eAED:0.16 QI:664|0.5|0.33|1|1|1|3|0|532; (*GB) gi|359472829|ref|XP_002273534.2| (e_value=2e-77) PREDICTED: squamosa promoter-binding-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=1e-43) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=1e-44) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc05g012040.2.1 (e_value=8e-128) genomic_reference:SL2.40ch05 gene_region:5268986-5273711 transcript_region:SL2.40ch05:5268986..5273711+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00036294g0005.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|1|1|4|413|131; (*GB) gi|224114948|ref|XP_002316900.1| (e_value=3e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6MD00|KDSB_PARUW (e_value=1e-33) 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1;; (*TAIR) AT1G53000.1 (e_value=3e-80) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=7e-88) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00036294g0006.1 protein AED:0.14 eAED:0.39 QI:62|1|0|1|1|1|2|0|49; (*GB) gi|356514754|ref|XP_003526068.1| (e_value=3e-24) PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase-like [Glycine max];; (*TAIR) AT1G53000.1 (e_value=1e-25) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=6e-26) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00029940g0009.1 protein AED:0.36 eAED:0.36 QI:205|1|1|1|0.5|0.66|3|523|275; (*GB) gi|225448932|ref|XP_002267178.1| (e_value=6e-80) PREDICTED: heterogeneous nuclear ribonucleoprotein G [Vitis vinifera];; (*SWP) sp|P49311|GRP2_SINAL (e_value=3e-21) Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1;; (*TAIR) AT5G04280.1 (e_value=4e-48) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr5:1192461-1195413 FORWARD LENGTH=310;; (*ITAG) Solyc03g071560.2.1 (e_value=1e-118) genomic_reference:SL2.40ch03 gene_region:41147503-41156677 transcript_region:SL2.40ch03:41147503..41156677+ go_terms:GO:0008143,GO:0003730 functional_description:"RNA-binding protein-like (AHRD V1 *-** Q8RWN5_ARATH); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008143,GO:0003730 NbS00029940g0008.1 protein AED:0.15 eAED:0.15 QI:331|1|1|1|0.75|0.6|5|284|492; (*GB) gi|315272010|gb|ADU02586.1| (e_value=0.0) pectate lyase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q9SCP2|PLY12_ARATH (e_value=0.0) Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2;; (*TAIR) AT5G04310.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:1203356-1207352 REVERSE LENGTH=518;; (*ITAG) Solyc03g071570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:41156587-41160750 transcript_region:SL2.40ch03:41156587..41160750- go_terms:GO:0016829 functional_description:"Pectate lyase-like protein (AHRD V1 **** Q6U6I9_BRANA); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00029940g0007.1 protein AED:0.25 eAED:0.25 QI:217|1|1|1|0|0.16|6|436|203; (*GB) gi|225448962|ref|XP_002269306.1| (e_value=1e-63) PREDICTED: uncharacterized protein LOC100258145 [Vitis vinifera];; (*TAIR) AT2G39170.1 (e_value=3e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc11g008310.1.1 (e_value=5e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00041830g0006.1 protein AED:0.13 eAED:0.13 QI:71|0.83|0.69|1|0.58|0.46|13|159|683; (*GB) gi|255571240|ref|XP_002526570.1| (e_value=5e-160) brca1 associated ring domain, putative [Ricinus communis];; (*SWP) sp|Q8RXD4|BRCA1_ARATH (e_value=4e-77) Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1;; (*TAIR) AT1G04020.1 (e_value=1e-136) | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=714;; (*ITAG) Solyc06g008210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2089179-2096386 transcript_region:SL2.40ch06:2089179..2096386- go_terms:GO:0003713,GO:0003677 functional_description:"Breast cancer type 1 susceptibility protein homolog (Fragment) (AHRD V1 *--- A5A751_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713,GO:0003677 NbS00041830g0007.1 protein AED:0.37 eAED:0.37 QI:0|1|0.85|1|1|1|7|0|460; (*GB) gi|4519671|dbj|BAA75684.1| (e_value=3e-171) WERBP-1 [Nicotiana tabacum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-33) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=4e-92) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc06g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2083305-2088344 transcript_region:SL2.40ch06:2083305..2088344+ go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- B4F7W7_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00019070g0001.1 protein AED:0.23 eAED:0.25 QI:497|0|0.5|1|0|0.5|2|0|251; (*GB) gi|225461411|ref|XP_002282248.1| (e_value=7e-76) PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Vitis vinifera];; (*SWP) sp|Q8GUK7|RMA3_ARATH (e_value=1e-44) E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=8e-46) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc10g006960.1.1 (e_value=4e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1383858-1384559 transcript_region:SL2.40ch10:1383858..1384559- go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00019070g0002.1 protein AED:0.29 eAED:0.29 QI:434|0|0.5|1|0|1|2|821|108; (*GB) gi|312231978|gb|ADQ53450.1| (e_value=2e-61) plastid thioredoxin M precursor [Nicotiana tabacum];; (*SWP) sp|Q9SEU6|TRXM4_ARATH (e_value=7e-55) Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2;; (*TAIR) AT3G15360.1 (e_value=5e-56) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc10g006970.2.1 (e_value=2e-66) genomic_reference:SL2.40ch10 gene_region:1387299-1389937 transcript_region:SL2.40ch10:1387299..1389937- go_terms:GO:0008047 functional_description:"Thioredoxin m (AHRD V1 ***- B9HZV8_POPTR); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0008047 NbS00019070g0006.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|72 NbS00019070g0015.1 protein AED:0.40 eAED:0.57 QI:0|0|0|1|0|0|3|0|83 NbS00010897g0001.1 protein AED:0.24 eAED:0.24 QI:175|1|1|1|0.5|0.33|3|396|116; (*GB) gi|225436532|ref|XP_002277230.1| (e_value=5e-46) PREDICTED: SNF1-related protein kinase regulatory subunit beta-3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZUU8|KINB3_ARATH (e_value=3e-33) SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1;; (*TAIR) AT2G28060.1 (e_value=2e-34) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr2:11950174-11950618 REVERSE LENGTH=114;; (*ITAG) Solyc06g010260.2.1 (e_value=2e-57) genomic_reference:SL2.40ch06 gene_region:5577524-5578199 transcript_region:SL2.40ch06:5577524..5578199- go_terms:GO:0005515 functional_description:"5'-AMP-activated protein kinase subunit beta-2 (AHRD V1 *-*- AAKB2_HUMAN); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0005515 NbS00033518g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|802; (*GB) gi|356600306|gb|AET22504.1| (e_value=6e-136) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=4e-89) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=3e-72) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g008070.2.1 (e_value=2e-137) genomic_reference:SL2.40ch05 gene_region:2500501-2503179 transcript_region:SL2.40ch05:2500501..2503179+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00033518g0009.1 protein AED:0.16 eAED:0.16 QI:224|1|0.81|1|0.9|0.90|11|0|646; (*GB) gi|224129082|ref|XP_002320496.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O94580|YQ77_SCHPO (e_value=1e-26) Ubiquitin and WLM domain-containing protein C1442.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.07c PE=2 SV=1;; (*TAIR) AT5G35690.1 (e_value=3e-137) | Symbols: | CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13865027-13868117 REVERSE LENGTH=603;; (*ITAG) Solyc12g005980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:600882-605360 transcript_region:SL2.40ch12:600882..605360- functional_description:"Zinc ion binding protein (AHRD V1 *--- C6HA87_AJECH); contains Interpro domain(s) IPR013536 WLM "; NbS00033518g0006.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|183; (*GB) gi|379056248|dbj|BAL68164.1| (e_value=2e-95) ethylene response factor #44 [Nicotiana tabacum];; (*SWP) sp|Q9MAI5|ERF79_ARATH (e_value=1e-17) Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1;; (*TAIR) AT1G53170.1 (e_value=1e-18) | Symbols: ATERF-8, ATERF8, ERF8 | ethylene response factor 8 | chr1:19821539-19822096 REVERSE LENGTH=185;; (*ITAG) Solyc12g005960.1.1 (e_value=1e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:591366-591947 transcript_region:SL2.40ch12:591366..591947- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007618g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|225432502|ref|XP_002279802.1| (e_value=5e-124) PREDICTED: guanylate kinase isoform 1 [Vitis vinifera];; (*SWP) sp|Q3ZWD8|KGUA_DEHSC (e_value=3e-57) Guanylate kinase OS=Dehalococcoides sp. (strain CBDB1) GN=gmk PE=3 SV=1;; (*TAIR) AT3G06200.1 (e_value=1e-108) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:1877678-1878526 FORWARD LENGTH=282;; (*ITAG) Solyc11g005900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:714120-715034 transcript_region:SL2.40ch11:714120..715034- go_terms:GO:0006163 functional_description:"Guanylate kinase family protein expressed (AHRD V1 ***- Q10M74_ORYSJ); contains Interpro domain(s) IPR017665 Guanylate kinase, sub-group "; GO:0006163 NbS00007618g0010.1 protein AED:0.26 eAED:0.30 QI:0|0.76|0.83|1|0.58|0.66|18|67|1262; (*GB) gi|224130570|ref|XP_002328322.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMJ0|P4KB1_ARATH (e_value=0.0) Phosphatidylinositol 4-kinase beta 1 OS=Arabidopsis thaliana GN=PI4KBETA1 PE=1 SV=1;; (*TAIR) AT5G64070.1 (e_value=0.0) | Symbols: PI-4KBETA1, PI4KBETA1 | phosphatidylinositol 4-OH kinase beta1 | chr5:25637492-25643902 REVERSE LENGTH=1121;; (*ITAG) Solyc11g005910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:718677-739662 transcript_region:SL2.40ch11:718677..739662+ go_terms:GO:0005515,GO:0004430 functional_description:"Phosphatidylinositol kinase (AHRD V1 **** B9V0T3_ORYRU); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0005515,GO:0004430 NbS00054318g0006.1 protein AED:0.23 eAED:0.23 QI:158|1|0.83|1|1|1|6|241|212; (*GB) gi|28192427|gb|AAL71857.1| (e_value=6e-145) dehydroascorbate reductase [Nicotiana tabacum];; (*SWP) sp|Q9FRL8|DHAR2_ARATH (e_value=5e-115) Glutathione S-transferase DHAR2 OS=Arabidopsis thaliana GN=DHAR2 PE=1 SV=1;; (*TAIR) AT1G75270.1 (e_value=4e-116) | Symbols: DHAR2 | dehydroascorbate reductase 2 | chr1:28250255-28251237 REVERSE LENGTH=213;; (*ITAG) Solyc05g054760.2.1 (e_value=2e-136) genomic_reference:SL2.40ch05 gene_region:63753656-63758079 transcript_region:SL2.40ch05:63753656..63758079- go_terms:GO:0045174 functional_description:"Dehydroascorbate reductase (Fragment) (AHRD V1 ***- Q1G0W3_SOLLC); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0045174 NbS00054318g0007.1 protein AED:0.21 eAED:0.21 QI:0|0.93|0.94|1|0.87|0.94|17|250|706; (*GB) gi|356502440|ref|XP_003520027.1| (e_value=0.0) PREDICTED: sulfate transporter 4.1, chloroplastic-like [Glycine max];; (*SWP) sp|Q8GYH8|SUT42_ARATH (e_value=0.0) Probable sulfate transporter 4.2 OS=Arabidopsis thaliana GN=SULTR4;2 PE=2 SV=2;; (*TAIR) AT3G12520.1 (e_value=0.0) | Symbols: SULTR4;2 | sulfate transporter 4;2 | chr3:3967976-3971891 REVERSE LENGTH=677;; (*ITAG) Solyc05g054740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63739210-63747859 transcript_region:SL2.40ch05:63739210..63747859+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00002324g0003.1 protein AED:0.60 eAED:0.89 QI:62|0|0|0.33|0|0|3|196|97; (*GB) gi|224116680|ref|XP_002317364.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g061780.2.1 (e_value=2e-38) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00002324g0109.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|354 NbS00002324g0110.1 protein AED:0.17 eAED:0.29 QI:262|0|0.5|1|1|1|2|0|79 NbS00005031g0013.1 protein AED:0.16 eAED:0.17 QI:229|0.5|0.66|1|1|1|3|238|464; (*GB) gi|195963550|gb|ACG59943.1| (e_value=0.0) metacaspase type II [Nicotiana tabacum];; (*SWP) sp|O64517|MCA4_ARATH (e_value=0.0) Metacaspase-4 OS=Arabidopsis thaliana GN=AMC4 PE=1 SV=1;; (*TAIR) AT1G79340.1 (e_value=0.0) | Symbols: AtMC4, MC4 | metacaspase 4 | chr1:29842849-29844368 FORWARD LENGTH=418;; (*ITAG) Solyc09g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67309562-67312625 transcript_region:SL2.40ch09:67309562..67312625- go_terms:GO:0004197 functional_description:"Metacaspase 7 (AHRD V1 ***- D7KWG9_ARALY); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0004197 NbS00005031g0019.1 protein AED:0.01 eAED:0.01 QI:6|1|1|1|1|1|5|353|213; (*GB) gi|359478054|ref|XP_002268535.2| (e_value=2e-97) PREDICTED: transcription factor bHLH128 [Vitis vinifera];; (*SWP) sp|Q8H102|BH128_ARATH (e_value=5e-65) Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1;; (*TAIR) AT1G05805.1 (e_value=4e-66) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1744843-1747427 FORWARD LENGTH=362;; (*ITAG) Solyc09g098110.2.1 (e_value=4e-146) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00005031g0024.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|508; (*GB) gi|224109096|ref|XP_002315082.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=0.0) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=0.0) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc05g053860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63042284-63044388 transcript_region:SL2.40ch05:63042284..63044388+ go_terms:GO:0005351,GO:0015226 functional_description:"Solute carrier family 22 member 5 (Predicted) (AHRD V1 ***- B3RF59_SORAR); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015226 NbS00005031g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|161; (*GB) gi|159517157|gb|ABW97846.1| (e_value=2e-51) MYC [Nicotiana tabacum];; (*ITAG) Solyc09g098110.2.1 (e_value=2e-39) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00005031g0023.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|350|102; (*GB) gi|225462315|ref|XP_002266781.1| (e_value=3e-53) PREDICTED: uncharacterized protein LOC100246650 [Vitis vinifera];; (*TAIR) AT1G79390.1 (e_value=3e-48) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29863465-29864276 REVERSE LENGTH=126;; (*ITAG) Solyc09g098140.2.1 (e_value=1e-63) genomic_reference:SL2.40ch09 gene_region:67306143-67309514 transcript_region:SL2.40ch09:67306143..67309514+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005031g0002.1 protein AED:0.13 eAED:0.13 QI:436|1|1|1|1|1|2|372|89; (*GB) gi|350537409|ref|NP_001234292.1| (e_value=2e-46) pirin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=6e-48) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT2G43120.1 (e_value=7e-35) | Symbols: | RmlC-like cupins superfamily protein | chr2:17927339-17928871 FORWARD LENGTH=321;; (*ITAG) Solyc09g098160.2.1 (e_value=4e-49) genomic_reference:SL2.40ch09 gene_region:67314368-67316427 transcript_region:SL2.40ch09:67314368..67316427+ go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00008803g0015.1 protein AED:0.35 eAED:0.35 QI:0|0|0.33|1|1|1|3|239|413; (*GB) gi|225735180|gb|ACO25567.1| (e_value=0.0) protein kinase-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=1e-158) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=1e-159) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=4e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00008803g0010.1 protein AED:0.17 eAED:0.19 QI:180|0.11|0|0.8|0.44|0.4|10|0|1734; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=0.0) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=6e-131) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=3e-53) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g013280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00002501g0005.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|1|1|2|0|69; (*GB) gi|255559482|ref|XP_002520761.1| (e_value=6e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G06080.2 (e_value=1e-19) | Symbols: | Plant protein of unknown function (DUF828) | chr3:1834959-1837524 REVERSE LENGTH=469;; (*ITAG) Solyc09g065030.2.1 (e_value=2e-29) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002501g0013.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|0.5|0.66|3|0|70; (*GB) gi|224066517|ref|XP_002302119.1| (e_value=5e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19160.1 (e_value=4e-18) | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 | chr5:6430725-6432456 FORWARD LENGTH=464;; (*ITAG) Solyc09g065030.2.1 (e_value=2e-30) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002501g0002.1 protein AED:0.11 eAED:0.13 QI:0|1|0.83|1|1|1|6|0|421; (*GB) gi|255559478|ref|XP_002520759.1| (e_value=8e-144) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LS23|ALMTD_ARATH (e_value=4e-76) Aluminum-activated malate transporter 13 OS=Arabidopsis thaliana GN=ALMT13 PE=2 SV=1;; (*TAIR) AT5G46600.1 (e_value=3e-77) | Symbols: | Aluminium activated malate transporter family protein | chr5:18907849-18910742 REVERSE LENGTH=539;; (*ITAG) Solyc09g065070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58474183-58477833 transcript_region:SL2.40ch09:58474183..58477833- go_terms:GO:0008509 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 **-* Q6EPG5_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0008509 NbS00002501g0012.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.25|0.75|1|1|4|138|108 NbS00002501g0014.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|296086732|emb|CBI32367.3| (e_value=9e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G19160.1 (e_value=2e-45) | Symbols: TBL11 | TRICHOME BIREFRINGENCE-LIKE 11 | chr5:6430725-6432456 FORWARD LENGTH=464;; (*ITAG) Solyc09g065030.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002501g0203.1 protein AED:0.41 eAED:0.41 QI:306|0.4|0.5|0.66|0.8|0.66|6|146|128 NbS00022696g0007.1 protein AED:0.16 eAED:0.22 QI:0|0|0|0.75|0|0|4|0|278; (*GB) gi|224113879|ref|XP_002316602.1| (e_value=3e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1PED9|FBL63_ARATH (e_value=1e-18) F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1;; (*TAIR) AT3G59190.1 (e_value=7e-20) | Symbols: | F-box/RNI-like superfamily protein | chr3:21884740-21886101 FORWARD LENGTH=388;; (*ITAG) Solyc07g064260.2.1 (e_value=1e-96) genomic_reference:SL2.40ch07 gene_region:63701666-63705606 transcript_region:SL2.40ch07:63701666..63705606+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 *-*- D7LTH7_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515 NbS00037378g0010.1 protein AED:0.08 eAED:0.09 QI:312|0.66|0.85|1|0.66|0.85|7|784|680; (*GB) gi|225444798|ref|XP_002278397.1| (e_value=0.0) PREDICTED: phospholipid:diacylglycerol acyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=0.0) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=0.0) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc07g041210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49315985-49322286 transcript_region:SL2.40ch07:49315985..49322286- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** A6R763_AJECN); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00037378g0001.1 protein AED:0.11 eAED:0.11 QI:614|1|1|1|0.33|0.25|4|221|354; (*GB) gi|147780466|emb|CAN62547.1| (e_value=6e-158) hypothetical protein VITISV_000759 [Vitis vinifera];; (*SWP) sp|Q8GZ92|BRXL4_ARATH (e_value=2e-121) Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1;; (*TAIR) AT5G20540.1 (e_value=1e-122) | Symbols: ATBRXL4, BRX-LIKE4, BRXL4 | BREVIS RADIX-like 4 | chr5:6947943-6951760 FORWARD LENGTH=384;; (*ITAG) Solyc07g041230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49459203-49463605 transcript_region:SL2.40ch07:49459203..49463605+ functional_description:"Protein Brevis radix-like 4 (AHRD V1 ***- BRXL4_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; NbS00033328g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|431; (*GB) gi|225438450|ref|XP_002277064.1| (e_value=4e-180) PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|Q7Z2H8|S36A1_HUMAN (e_value=1e-30) Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1;; (*TAIR) AT2G42005.1 (e_value=2e-174) | Symbols: | Transmembrane amino acid transporter family protein | chr2:17531323-17532564 REVERSE LENGTH=413;; (*ITAG) Solyc10g048180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:39912242-39913525 transcript_region:SL2.40ch10:39912242..39913525+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00033328g0002.1 protein AED:0.09 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|255562220|ref|XP_002522118.1| (e_value=3e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G14660.1 (e_value=5e-19) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). | chr2:6272506-6272982 FORWARD LENGTH=158;; (*ITAG) Solyc10g048190.1.1 (e_value=9e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:39967120-39967536 transcript_region:SL2.40ch10:39967120..39967536+ functional_description:"Ubiquinol-Cytochrome c reductase iron-sulfur subunit (AHRD V1 **-- B6B5V9_9RHOB); contains Interpro domain(s) IPR002740 Uncharacterised protein family UPF0310 "; NbS00035172g0006.1 protein AED:0.02 eAED:0.02 QI:58|1|0.5|1|0.66|0.75|4|0|271; (*GB) gi|296088981|emb|CBI38684.3| (e_value=2e-37) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g009320.2.1 (e_value=9e-82) genomic_reference:SL2.40ch10 gene_region:3390698-3395700 transcript_region:SL2.40ch10:3390698..3395700- functional_description:"Unknown Protein (AHRD V1)"; NbS00035172g0007.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|193; (*GB) gi|28261781|ref|NP_783294.1| (e_value=3e-81) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=8e-83) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-65) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-83) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00049974g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.88|1|0.87|0.88|9|0|510; (*GB) gi|225435868|ref|XP_002263865.1| (e_value=0.0) PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera];; (*SWP) sp|O81027|HMGCL_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2;; (*TAIR) AT2G26800.2 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:11429192-11432290 REVERSE LENGTH=468;; (*ITAG) Solyc11g065070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47453918-47458087 transcript_region:SL2.40ch11:47453918..47458087+ go_terms:GO:0008152,GO:0003824,GO:0004419 functional_description:"Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase "; GO:0008152,GO:0003824,GO:0004419 NbS00018023g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|1|4|510|435; (*GB) gi|297845476|ref|XP_002890619.1| (e_value=2e-95) hypothetical protein ARALYDRAFT_472693 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G27090.1 (e_value=2e-97) | Symbols: | glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420;; (*ITAG) Solyc01g010440.2.1 (e_value=7e-168) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00019480g0005.1 protein AED:0.10 eAED:0.11 QI:0|1|0.7|1|1|1|10|7|889; (*GB) gi|225439827|ref|XP_002274246.1| (e_value=0.0) PREDICTED: phosphatidate phosphatase LPIN3-like [Vitis vinifera];; (*SWP) sp|Q92539|LPIN2_HUMAN (e_value=5e-67) Phosphatidate phosphatase LPIN2 OS=Homo sapiens GN=LPIN2 PE=1 SV=1;; (*TAIR) AT3G09560.3 (e_value=0.0) | Symbols: | Lipin family protein | chr3:2934953-2938673 REVERSE LENGTH=904;; (*ITAG) Solyc09g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:629824-638022 transcript_region:SL2.40ch09:629824..638022- go_terms:GO:0008195 functional_description:"Mg2+-dependent phosphatidate (PA) phosphatase catalyzes the dephosphorylation of PA to yield diacylglycerol and Pi responsible for de novo lipid synthesis homologous to mammalian lipin 1 (AHRD V1 *--* D6VZY7_YEAST); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; GO:0008195 NbS00042832g0009.1 protein AED:0.19 eAED:0.19 QI:108|1|0.83|1|0.4|0.33|6|127|470; (*GB) gi|357521093|ref|XP_003630835.1| (e_value=2e-42) B3 domain-containing protein [Medicago truncatula];; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=1e-28) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=1e-29) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc02g065350.2.1 (e_value=1e-138) genomic_reference:SL2.40ch02 gene_region:31128527-31130662 transcript_region:SL2.40ch02:31128527..31130662+ go_terms:GO:0003700,GO:0016564 functional_description:"B3 domain-containing transcription factor VRN1 (AHRD V1 *-** VRN1_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700,GO:0016564 NbS00042832g0002.1 protein AED:0.25 eAED:0.25 QI:1|0.77|0.7|1|0.88|0.9|10|0|609; (*GB) gi|296087683|emb|CBI34939.3| (e_value=2e-172) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q499P8|CP058_RAT (e_value=3e-19) UPF0420 protein C16orf58 homolog OS=Rattus norvegicus PE=2 SV=1;; (*TAIR) AT2G23470.1 (e_value=1e-150) | Symbols: RUS4 | Protein of unknown function, DUF647 | chr2:9999105-10001398 REVERSE LENGTH=520;; (*ITAG) Solyc02g065360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31132192-31137027 transcript_region:SL2.40ch02:31132192..31137027+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 *--- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbS00042832g0008.1 protein AED:0.01 eAED:0.01 QI:150|1|0.8|1|1|1|5|0|178; (*GB) gi|297745696|emb|CBI40981.3| (e_value=9e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G37090.1 (e_value=2e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17477338-17478559 FORWARD LENGTH=186;; (*ITAG) Solyc02g065370.2.1 (e_value=2e-75) genomic_reference:SL2.40ch02 gene_region:31137485-31139994 transcript_region:SL2.40ch02:31137485..31139994- functional_description:"Unknown Protein (AHRD V1)"; NbS00000673g0025.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.71|1|0.66|0.71|7|341|346; (*GB) gi|224057294|ref|XP_002299205.1| (e_value=6e-89) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g096400.2.1 (e_value=6e-99) genomic_reference:SL2.40ch01 gene_region:79261734-79268461 transcript_region:SL2.40ch01:79261734..79268461+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000673g0020.1 protein AED:0.34 eAED:0.34 QI:0|0|0.33|0.66|0.5|0.33|3|128|91; (*ITAG) Solyc10g049480.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00000673g0008.1 protein AED:0.41 eAED:0.72 QI:0|0.5|0.33|1|1|1|3|295|671; (*GB) gi|68300841|gb|AAY89359.1| (e_value=3e-76) RNA polymerase IV largest subunit [Solanum lycopersicum];; (*SWP) sp|Q5D869|NRPE1_ARATH (e_value=1e-55) DNA-directed RNA polymerase E subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1;; (*TAIR) AT2G40030.1 (e_value=9e-57) | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976;; (*ITAG) Solyc01g096390.2.1 (e_value=6e-131) genomic_reference:SL2.40ch01 gene_region:79236257-79259834 transcript_region:SL2.40ch01:79236257..79259834+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- D7LEE8_ARALY); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0006350 NbS00000673g0003.1 protein AED:0.07 eAED:0.08 QI:924|0.87|0.88|1|0.87|0.88|9|569|630; (*GB) gi|225465856|ref|XP_002265532.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 6-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFB8|PI5K6_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1;; (*TAIR) AT3G07960.1 (e_value=0.0) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:2535274-2538090 FORWARD LENGTH=715;; (*ITAG) Solyc01g096410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79270399-79274213 transcript_region:SL2.40ch01:79270399..79274213- go_terms:GO:0006508,GO:0046488,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0006508,GO:0046488,GO:0016308 NbS00000673g0023.1 protein AED:0.15 eAED:0.15 QI:392|1|1|1|0.5|0.33|3|263|195; (*GB) gi|224053250|ref|XP_002297737.1| (e_value=3e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H9D2|NQR_SOLTU (e_value=6e-102) NAD(P)H:quinone oxidoreductase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G27890.1 (e_value=2e-92) | Symbols: NQR | NADPH:quinone oxidoreductase | chr3:10350807-10351938 REVERSE LENGTH=196;; (*ITAG) Solyc01g096420.2.1 (e_value=5e-116) genomic_reference:SL2.40ch01 gene_region:79283757-79285091 transcript_region:SL2.40ch01:79283757..79285091+ functional_description:"Predicted NADPH-dependent FMN reductase (AHRD V1 ***- Q0W0S0_UNCMA); contains Interpro domain(s) IPR005025 NADPH-dependent FMN reductase "; NbS00000673g0007.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|443; (*GB) gi|359497788|ref|XP_002273247.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=4e-102) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=3e-103) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc01g096440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79289995-79292085 transcript_region:SL2.40ch01:79289995..79292085- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000673g0004.1 protein AED:0.22 eAED:0.22 QI:113|1|0.66|1|1|1|3|0|209; (*GB) gi|75153341|sp|Q8H9D2.1|NQR_SOLTU (e_value=1e-100) RecName: Full=NAD(P)H:quinone oxidoreductase; Short=NAD(P)H:QR;; (*SWP) sp|Q8H9D2|NQR_SOLTU (e_value=3e-102) NAD(P)H:quinone oxidoreductase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G27890.1 (e_value=1e-85) | Symbols: NQR | NADPH:quinone oxidoreductase | chr3:10350807-10351938 REVERSE LENGTH=196;; (*ITAG) Solyc01g096430.2.1 (e_value=5e-106) genomic_reference:SL2.40ch01 gene_region:79285952-79288255 transcript_region:SL2.40ch01:79285952..79288255- functional_description:"Predicted NADPH-dependent FMN reductase (AHRD V1 ***- Q0W0S0_UNCMA); contains Interpro domain(s) IPR005025 NADPH-dependent FMN reductase "; NbS00004543g0006.1 protein AED:0.32 eAED:0.32 QI:166|0.66|0.75|1|0|0.25|4|183|125 NbS00035752g0005.1 protein AED:0.31 eAED:0.31 QI:154|1|1|1|1|1|6|528|216; (*GB) gi|224081120|ref|XP_002306300.1| (e_value=2e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=1e-44) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G10350.1 (e_value=1e-108) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3255674-3257746 REVERSE LENGTH=217;; (*ITAG) Solyc11g009090.1.1 (e_value=5e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3204621-3209644 transcript_region:SL2.40ch11:3204621..3209644- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00035752g0006.1 protein AED:0.20 eAED:0.20 QI:526|1|1|1|1|1|2|265|320; (*GB) gi|225467167|ref|XP_002269291.1| (e_value=2e-150) PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZPE4|FBW2_ARATH (e_value=4e-102) F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1;; (*TAIR) AT4G08980.5 (e_value=3e-103) | Symbols: FBW2 | F-BOX WITH WD-40 2 | chr4:5758993-5760108 FORWARD LENGTH=317;; (*ITAG) Solyc11g009050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3176495-3178519 transcript_region:SL2.40ch11:3176495..3178519+ functional_description:"F-box protein-like (AHRD V1 ***- Q67X80_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023955g0006.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|3|387|292; (*GB) gi|118490007|gb|ABK96797.1| (e_value=4e-150) NAC domain protein NAC2 [Solanum tuberosum];; (*SWP) sp|O49255|NAC29_ARATH (e_value=5e-108) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=3e-109) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc05g007770.2.1 (e_value=6e-155) genomic_reference:SL2.40ch05 gene_region:2229720-2231644 transcript_region:SL2.40ch05:2229720..2231644+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00001659g0009.1 protein AED:0.31 eAED:0.31 QI:115|1|1|1|0.76|0.85|14|22|456; (*GB) gi|93209557|gb|ABF00136.1| (e_value=0.0) SNI1 [Solanum tuberosum];; (*TAIR) AT4G18470.1 (e_value=2e-100) | Symbols: SNI1 | negative regulator of systemic acquired resistance (SNI1) | chr4:10192984-10195511 FORWARD LENGTH=432;; (*ITAG) Solyc02g077320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36863515-36871818 transcript_region:SL2.40ch02:36863515..36871818- go_terms:GO:0016564 functional_description:"SNI1 (AHRD V1 ***- Q0ZFU7_SOLTU)"; GO:0016564 NbS00001659g0005.1 protein AED:0.11 eAED:0.11 QI:144|0.75|0.8|1|0.75|0.8|5|644|199; (*GB) gi|225443543|ref|XP_002277279.1| (e_value=1e-67) PREDICTED: GDSL esterase/lipase At5g45950-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FJ41|GDL85_ARATH (e_value=4e-48) GDSL esterase/lipase At5g45950 OS=Arabidopsis thaliana GN=At5g45950 PE=2 SV=1;; (*TAIR) AT5G45950.1 (e_value=3e-49) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18634155-18636512 FORWARD LENGTH=357;; (*ITAG) Solyc02g077330.2.1 (e_value=5e-97) genomic_reference:SL2.40ch02 gene_region:36880285-36883853 transcript_region:SL2.40ch02:36880285..36883853+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45950 (AHRD V1 ***- GDL85_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00001659g0011.1 protein AED:0.26 eAED:0.28 QI:0|0.83|0.71|1|1|1|7|553|193; (*GB) gi|225443539|ref|XP_002277179.1| (e_value=7e-79) PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase-like [Vitis vinifera];; (*SWP) sp|Q54EY1|DTD_DICDI (e_value=6e-48) D-tyrosyl-tRNA(Tyr) deacylase OS=Dictyostelium discoideum GN=dtd PE=3 SV=1;; (*TAIR) AT4G18460.1 (e_value=7e-79) | Symbols: | D-Tyr-tRNA(Tyr) deacylase family protein | chr4:10195763-10196679 REVERSE LENGTH=153;; (*ITAG) Solyc02g077310.2.1 (e_value=2e-91) genomic_reference:SL2.40ch02 gene_region:36859619-36863340 transcript_region:SL2.40ch02:36859619..36863340+ go_terms:GO:0051500,GO:0004045 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** B9N9M7_POPTR); contains Interpro domain(s) IPR003732 D-tyrosyl-tRNA(Tyr) deacylase "; GO:0051500,GO:0004045 NbS00010647g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.66|3|4|67; (*GB) gi|356525740|ref|XP_003531481.1| (e_value=7e-18) PREDICTED: DCN1-like protein 2-like [Glycine max];; (*TAIR) AT3G12760.1 (e_value=7e-18) | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250;; (*ITAG) Solyc12g017310.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6539479-6542269 transcript_region:SL2.40ch12:6539479..6542269- functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; NbS00010647g0005.1 protein AED:0.19 eAED:0.19 QI:1160|1|0.94|1|0.76|0.72|18|0|617; (*GB) gi|225462238|ref|XP_002263178.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SAJ3|FTSHC_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 12, chloroplastic OS=Arabidopsis thaliana GN=FTSH12 PE=2 SV=2;; (*TAIR) AT1G79560.1 (e_value=0.0) | Symbols: EMB156, EMB36, EMB1047, FTSH12 | FTSH protease 12 | chr1:29926976-29932308 FORWARD LENGTH=1008;; (*ITAG) Solyc02g079000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38187088-38202855 transcript_region:SL2.40ch02:38187088..38202855+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00010647g0008.1 protein AED:0.55 eAED:0.85 QI:0|0.25|0|0.8|1|1|5|0|126; (*ITAG) Solyc02g079000.2.1 (e_value=1e-16) genomic_reference:SL2.40ch02 gene_region:38187088-38202855 transcript_region:SL2.40ch02:38187088..38202855+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00009098g0010.1 protein AED:0.06 eAED:0.06 QI:86|1|1|1|1|1|2|125|214; (*GB) gi|224122374|ref|XP_002330607.1| (e_value=4e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6K5Q0|GL21_ORYSJ (e_value=1e-101) Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1;; (*TAIR) AT3G05950.1 (e_value=1e-88) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc10g078840.1.1 (e_value=3e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00009098g0011.1 protein AED:0.31 eAED:0.31 QI:212|0.75|0.8|1|0.5|0.6|5|294|257; (*GB) gi|255536977|ref|XP_002509555.1| (e_value=1e-114) Phosducin, putative [Ricinus communis];; (*SWP) sp|Q8MR62|VIAF1_DROME (e_value=7e-34) Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1;; (*TAIR) AT5G14240.1 (e_value=3e-102) | Symbols: | Thioredoxin superfamily protein | chr5:4596223-4597568 REVERSE LENGTH=256;; (*ITAG) Solyc10g078830.1.1 (e_value=1e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59847571-59851518 transcript_region:SL2.40ch10:59847571..59851518+ functional_description:"Phosducin-like protein 3 (AHRD V1 ***- B4FF90_MAIZE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00009098g0013.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.25|4|0|313; (*GB) gi|296088367|emb|CBI36812.3| (e_value=7e-104) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6K5P8|GL23_ORYSJ (e_value=5e-80) Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1;; (*TAIR) AT5G39110.1 (e_value=8e-71) | Symbols: | RmlC-like cupins superfamily protein | chr5:15657802-15658584 REVERSE LENGTH=222;; (*ITAG) Solyc10g078840.1.1 (e_value=1e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00000797g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.5|0.83|0.6|0.66|6|0|185 NbS00000797g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|105 NbS00025021g0003.1 protein AED:0.01 eAED:0.01 QI:47|1|1|1|1|1|2|166|581; (*GB) gi|224128446|ref|XP_002320332.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXK7|PME41_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2;; (*TAIR) AT4G02330.1 (e_value=0.0) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573;; (*ITAG) Solyc09g075330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00015128g0018.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|147; (*GB) gi|255586932|ref|XP_002534066.1| (e_value=8e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G06510.1 (e_value=6e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). | chr1:1992389-1993583 FORWARD LENGTH=277;; (*ITAG) Solyc10g007730.2.1 (e_value=6e-55) genomic_reference:SL2.40ch10 gene_region:1977115-1980047 transcript_region:SL2.40ch10:1977115..1980047+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015128g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|162; (*ITAG) Solyc10g007730.2.1 (e_value=3e-30) genomic_reference:SL2.40ch10 gene_region:1977115-1980047 transcript_region:SL2.40ch10:1977115..1980047+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015128g0005.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|709; (*GB) gi|225463201|ref|XP_002267837.1| (e_value=0.0) PREDICTED: PHD finger protein At1g33420 [Vitis vinifera];; (*SWP) sp|Q9C810|Y1342_ARATH (e_value=0.0) PHD finger protein At1g33420 OS=Arabidopsis thaliana GN=At1g33420 PE=1 SV=1;; (*TAIR) AT1G33420.1 (e_value=0.0) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:12121063-12123346 REVERSE LENGTH=697;; (*ITAG) Solyc04g007270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:983517-987368 transcript_region:SL2.40ch04:983517..987368+ go_terms:GO:0003677 functional_description:"PHD finger family protein (AHRD V1 **-- D7KII6_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00015128g0016.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|199; (*GB) gi|224116742|ref|XP_002331866.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G29820.2 (e_value=3e-28) | Symbols: | Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540;; (*ITAG) Solyc10g007740.2.1 (e_value=1e-36) genomic_reference:SL2.40ch10 gene_region:1981130-1985036 transcript_region:SL2.40ch10:1981130..1985036- go_terms:GO:0051103 functional_description:"Mg2+ transporter protein CorA family protein (AHRD V1 *-*- D0D0F5_9RHOB)"; GO:0051103 NbS00037540g0010.1 protein AED:0.16 eAED:0.16 QI:381|1|1|1|0.89|0.85|20|220|740; (*GB) gi|350539411|ref|NP_001234648.1| (e_value=0.0) GcpE [Solanum lycopersicum];; (*SWP) sp|F4K0E8|ISPG_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1;; (*TAIR) AT5G60600.1 (e_value=0.0) | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr5:24359447-24363274 FORWARD LENGTH=741;; (*ITAG) Solyc11g069380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51063324-51069419 transcript_region:SL2.40ch11:51063324..51069419+ go_terms:GO:0044237,GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (AHRD V1 ***- A9ZN14_HEVBR); contains Interpro domain(s) IPR017178 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical "; GO:0044237,GO:0055114 NbS00037540g0007.1 protein AED:0.03 eAED:0.03 QI:147|0.8|1|1|0.8|0.66|6|452|279; (*GB) gi|224059112|ref|XP_002299721.1| (e_value=9e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S3D1|BH068_ARATH (e_value=6e-25) Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2;; (*TAIR) AT4G29100.1 (e_value=5e-26) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341140-14344575 FORWARD LENGTH=407;; (*ITAG) Solyc03g120530.2.1 (e_value=5e-75) genomic_reference:SL2.40ch03 gene_region:62953941-62958187 transcript_region:SL2.40ch03:62953941..62958187+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00037540g0008.1 protein AED:0.23 eAED:0.43 QI:0|0|0.16|1|0|0.16|6|145|206; (*GB) gi|225442563|ref|XP_002279072.1| (e_value=2e-47) PREDICTED: peroxisome biogenesis protein 2 [Vitis vinifera];; (*SWP) sp|Q9CA86|PEX2_ARATH (e_value=5e-45) Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1;; (*TAIR) AT1G79810.1 (e_value=4e-46) | Symbols: TED3, PEX2, ATPEX2 | Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein | chr1:30019944-30022156 FORWARD LENGTH=333;; (*ITAG) Solyc06g066570.2.1 (e_value=5e-49) genomic_reference:SL2.40ch06 gene_region:38205217-38211891 transcript_region:SL2.40ch06:38205217..38211891+ go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 2 (AHRD V1 *-*- A8NXV9_COPC7); contains Interpro domain(s) IPR006845 Pex, N-terminal "; GO:0005515 NbS00037540g0009.1 protein AED:0.53 eAED:0.69 QI:0|0|0|0.66|0|0|3|0|69 NbS00001237g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|255683546|gb|ACU27362.1| (e_value=2e-84) superman [Nicotiana tabacum];; (*SWP) sp|Q38895|SUP_ARATH (e_value=1e-22) Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1;; (*TAIR) AT3G23130.1 (e_value=8e-24) | Symbols: SUP, FON1, FLO10 | C2H2 and C2HC zinc fingers superfamily protein | chr3:8242504-8243118 FORWARD LENGTH=204;; (*ITAG) Solyc09g089590.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64669031-64669624 transcript_region:SL2.40ch09:64669031..64669624+ go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00005998g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|142; (*GB) gi|225453114|ref|XP_002272293.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100255386 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=2e-45) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G22990.1 (e_value=2e-61) | Symbols: HIPP22 | Heavy metal transport/detoxification superfamily protein | chr1:8139221-8140045 FORWARD LENGTH=152;; (*ITAG) Solyc02g091300.2.1 (e_value=2e-74) genomic_reference:SL2.40ch02 gene_region:47214338-47215294 transcript_region:SL2.40ch02:47214338..47215294+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00005998g0006.1 protein AED:0.12 eAED:0.12 QI:24|0.5|0.33|1|0|0.33|3|308|121 NbS00057863g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|145; (*GB) gi|225423839|ref|XP_002278396.1| (e_value=1e-53) PREDICTED: nudix hydrolase 1 [Vitis vinifera];; (*SWP) sp|Q9CA40|NUDT1_ARATH (e_value=3e-45) Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1;; (*TAIR) AT1G68760.1 (e_value=2e-46) | Symbols: ATNUDT1, ATNUDX1, NUDX1 | nudix hydrolase 1 | chr1:25829090-25829607 FORWARD LENGTH=147;; (*ITAG) Solyc00g128870.2.1 (e_value=3e-75) genomic_reference:SL2.40ch00 gene_region:16727160-16728659 transcript_region:SL2.40ch00:16727160..16728659+ go_terms:GO:0016787 functional_description:"Nudix hydrolase 1 (AHRD V1 ***- A6ANR4_VIBHA); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00000662g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.6|1|0.25|0.6|5|0|316; (*GB) gi|359482294|ref|XP_002284087.2| (e_value=2e-167) PREDICTED: GDSL esterase/lipase At5g03820-like [Vitis vinifera];; (*SWP) sp|Q9LZC5|GDL73_ARATH (e_value=1e-144) GDSL esterase/lipase At5g03820 OS=Arabidopsis thaliana GN=At5g03820 PE=3 SV=1;; (*TAIR) AT5G03820.1 (e_value=1e-145) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr5:1015803-1017251 REVERSE LENGTH=354;; (*ITAG) Solyc10g085740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64141402-64143991 transcript_region:SL2.40ch10:64141402..64143991- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g03820 (AHRD V1 ***- GDL73_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00000662g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.5|1|0.6|0.66|6|510|321; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=3e-155) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZSS6|THD1_ARATH (e_value=2e-137) Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=1e-138) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=6e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00000662g0009.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|379; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=5e-143) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=1e-120) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=9e-122) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc10g083750.1.1 (e_value=1e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62830767-62834436 transcript_region:SL2.40ch10:62830767..62834436- go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00012132g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.66|1|0.5|0.33|3|204|675; (*GB) gi|224069764|ref|XP_002326408.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9C5|Y1680_ARATH (e_value=7e-113) Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1;; (*TAIR) AT2G36570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15335583-15337725 FORWARD LENGTH=672;; (*ITAG) Solyc09g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2279079-2281897 transcript_region:SL2.40ch09:2279079..2281897- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00002180g0001.1 protein AED:0.03 eAED:0.03 QI:73|0|0.5|1|0|0.5|2|528|224; (*GB) gi|225433914|ref|XP_002267960.1| (e_value=4e-83) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=8e-26) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT3G59470.2 (e_value=2e-68) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr3:21979099-21980097 REVERSE LENGTH=251;; (*ITAG) Solyc06g073200.2.1 (e_value=3e-38) genomic_reference:SL2.40ch06 gene_region:41496753-41499357 transcript_region:SL2.40ch06:41496753..41499357+ functional_description:"Far-red impaired responsive family protein (AHRD V1 **-- D7LWD6_ARALY); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00002180g0103.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|150 NbS00002180g0110.1 protein AED:0.20 eAED:0.20 QI:127|0.66|0.75|1|1|1|4|551|235 NbS00020325g0002.1 protein AED:0.09 eAED:0.35 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=3e-52) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=8e-54) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-53) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=6e-55) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00033985g0014.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|0.75|0.66|0.75|4|0|369; (*GB) gi|255577954|ref|XP_002529849.1| (e_value=5e-132) Adaptin ear-binding coat-associated protein, putative [Ricinus communis];; (*SWP) sp|Q681Q7|Y1390_ARATH (e_value=3e-104) Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1;; (*TAIR) AT1G03900.1 (e_value=2e-105) | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 | chr1:991252-992852 FORWARD LENGTH=272;; (*ITAG) Solyc09g066490.2.1 (e_value=1e-159) genomic_reference:SL2.40ch09 gene_region:60502769-60505289 transcript_region:SL2.40ch09:60502769..60505289- go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 2 (AHRD V1 **** B4FAZ6_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00033985g0008.1 protein AED:0.24 eAED:0.28 QI:216|0.6|0.33|1|0.6|0.66|6|0|263; (*GB) gi|4204313|gb|AAD10694.1| (e_value=1e-116) Hypothetical protein [Arabidopsis thaliana];; (*SWP) sp|Q9XF19|AB21I_ARATH (e_value=8e-110) ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1;; (*TAIR) AT5G44110.1 (e_value=6e-111) | Symbols: ATPOP1, ATNAP2, POP1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:17754222-17755672 REVERSE LENGTH=282;; (*ITAG) Solyc09g066470.2.1 (e_value=2e-136) genomic_reference:SL2.40ch09 gene_region:60487510-60491353 transcript_region:SL2.40ch09:60487510..60491353- go_terms:GO:0015424 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- CBIO2_STRPF); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015424 NbS00033985g0013.1 protein AED:0.13 eAED:0.15 QI:0|0.3|0.27|1|0.7|0.72|11|352|1159; (*GB) gi|255577952|ref|XP_002529848.1| (e_value=0.0) DNA repair and recombination protein RAD26, putative [Ricinus communis];; (*SWP) sp|P40352|RAD26_YEAST (e_value=0.0) DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1 SV=1;; (*TAIR) AT2G18760.1 (e_value=0.0) | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129154-8133502 FORWARD LENGTH=1187;; (*ITAG) Solyc09g066480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60493554-60502291 transcript_region:SL2.40ch09:60493554..60502291+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--- CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00058683g0009.1 protein AED:0.03 eAED:0.03 QI:218|0.83|0.71|1|0.66|0.42|7|0|297; (*GB) gi|147841260|emb|CAN75612.1| (e_value=2e-50) hypothetical protein VITISV_022290 [Vitis vinifera];; (*TAIR) AT5G38720.1 (e_value=3e-42) | Symbols: | unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). | chr5:15508417-15510472 REVERSE LENGTH=306;; (*ITAG) Solyc02g089600.2.1 (e_value=1e-86) genomic_reference:SL2.40ch02 gene_region:45940297-45945305 transcript_region:SL2.40ch02:45940297..45945305+ functional_description:"Ribosomal RNA-processing protein 7 homolog A (AHRD V1 *-*- RRP7A_HUMAN)"; NbS00058683g0011.1 protein AED:0.13 eAED:0.21 QI:364|0.5|0.33|1|1|1|3|401|362; (*GB) gi|164431178|gb|ABY55855.1| (e_value=0.0) S-adenosylmethionine decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|Q96471|DCAM_IPONI (e_value=0.0) S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1;; (*TAIR) AT3G02470.4 (e_value=4e-153) | Symbols: | S-adenosylmethionine decarboxylase | chr3:510223-511323 FORWARD LENGTH=366;; (*ITAG) Solyc02g089610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45946477-45947565 transcript_region:SL2.40ch02:45946477..45947565- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00058683g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|26453298|dbj|BAC43722.1| (e_value=4e-16) unknown protein [Arabidopsis thaliana];; (*TAIR) AT4G04885.1 (e_value=9e-19) | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808;; (*ITAG) Solyc12g094490.1.1 (e_value=5e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63044375-63052170 transcript_region:SL2.40ch12:63044375..63052170+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR008942 ENTH/VHS "; GO:0005622 NbS00003276g0005.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|211|350; (*GB) gi|384081620|ref|NP_001244914.1| (e_value=1e-144) adenylate isopentenyltransferase [Solanum lycopersicum];; (*SWP) sp|Q5GHF7|IPT_HUMLU (e_value=4e-102) Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1;; (*TAIR) AT1G68460.1 (e_value=3e-98) | Symbols: ATIPT1, IPT1 | isopentenyltransferase 1 | chr1:25668976-25670049 REVERSE LENGTH=357;; (*ITAG) Solyc04g007240.1.1 (e_value=6e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:942579-943556 transcript_region:SL2.40ch04:942579..943556+ go_terms:GO:0004811,GO:0009824 functional_description:"tRNA dimethylallyltransferase (AHRD V1 **** D6W2X4_YEAST); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0004811,GO:0009824 NbS00004945g0008.1 protein AED:0.26 eAED:0.26 QI:4|0|0.5|1|0|0.5|2|16|472; (*GB) gi|255565615|ref|XP_002523797.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=0.0) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc11g068350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50183235-50186105 transcript_region:SL2.40ch11:50183235..50186105+ functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00018999g0012.1 protein AED:0.20 eAED:0.20 QI:237|1|1|1|1|1|4|133|281; (*GB) gi|225469372|ref|XP_002263193.1| (e_value=4e-110) PREDICTED: homeobox-leucine zipper protein HAT4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q05466|HAT4_ARATH (e_value=2e-86) Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1;; (*TAIR) AT4G16780.1 (e_value=1e-87) | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein 2 | chr4:9449291-9450604 FORWARD LENGTH=284;; (*ITAG) Solyc06g060830.2.1 (e_value=2e-125) genomic_reference:SL2.40ch06 gene_region:35241162-35243058 transcript_region:SL2.40ch06:35241162..35243058- go_terms:GO:0043565,GO:0042803 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q40781_PIMBR); contains Interpro domain(s) IPR006712 HD-ZIP protein, N-terminal "; GO:0043565,GO:0042803 NbS00018999g0015.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|3|0|360; (*GB) gi|224074191|ref|XP_002304294.1| (e_value=4e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g060820.1.1 (e_value=9e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35238214-35239365 transcript_region:SL2.40ch06:35238214..35239365+ functional_description:"Glycoprotein homolog (AHRD V1 *-*- Q8LCM1_ARATH)"; NbS00026938g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.8|0.66|1|1|1|6|0|654; (*GB) gi|350535242|ref|NP_001234184.1| (e_value=0.0) auxin efflux facilitator SlPIN4 [Solanum lycopersicum];; (*SWP) sp|Q9S7Z8|PIN3_ARATH (e_value=0.0) Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1;; (*TAIR) AT1G70940.1 (e_value=0.0) | Symbols: PIN3, ATPIN3 | Auxin efflux carrier family protein | chr1:26743170-26745871 FORWARD LENGTH=640;; (*ITAG) Solyc05g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2482150-2485589 transcript_region:SL2.40ch05:2482150..2485589+ go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier (AHRD V1 **** D6RT10_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00002918g0005.1 protein AED:0.06 eAED:0.06 QI:115|0.85|1|1|1|1|8|320|289; (*GB) gi|224055555|ref|XP_002298537.1| (e_value=3e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NV31|WDR82_DANRE (e_value=2e-68) WD repeat-containing protein 82 OS=Danio rerio GN=wdr82 PE=2 SV=1;; (*TAIR) AT5G14530.1 (e_value=4e-157) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4684782-4686865 REVERSE LENGTH=330;; (*ITAG) Solyc12g035360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:24407410-24424040 transcript_region:SL2.40ch12:24407410..24424040+ go_terms:GO:0005515,GO:0042800 functional_description:"Histone H3 methyltransferase complex and RNA cleavage factor II complex subunit SWD2 (AHRD V1 **-* A9SRV1_PHYPA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0042800 NbS00019204g0002.1 protein AED:0.11 eAED:0.11 QI:342|1|0.5|1|1|1|2|0|276; (*GB) gi|118482189|gb|ABK93023.1| (e_value=1e-65) unknown [Populus trichocarpa];; (*TAIR) AT4G35070.2 (e_value=8e-51) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:16694576-16695387 FORWARD LENGTH=210;; (*ITAG) Solyc01g111610.2.1 (e_value=5e-82) genomic_reference:SL2.40ch01 gene_region:89593868-89594786 transcript_region:SL2.40ch01:89593868..89594786+ functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY)"; NbS00025289g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|152 NbS00045085g0005.1 protein AED:0.11 eAED:0.15 QI:33|0.85|0.62|1|0.71|0.75|8|0|250; (*GB) gi|225454716|ref|XP_002271887.1| (e_value=2e-134) PREDICTED: V-type proton ATPase subunit H-like [Vitis vinifera];; (*SWP) sp|Q9LX65|VATH_ARATH (e_value=4e-123) V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1;; (*TAIR) AT3G42050.1 (e_value=3e-124) | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441;; (*ITAG) Solyc07g005940.2.1 (e_value=6e-147) genomic_reference:SL2.40ch07 gene_region:776212-784540 transcript_region:SL2.40ch07:776212..784540- go_terms:GO:0005515 functional_description:"Vacuolar ATPase subunit H protein (AHRD V1 ***- B6SIW6_MAIZE); contains Interpro domain(s) IPR004908 ATPase, V1 complex, subunit H "; GO:0005515 NbS00059955g0001.1 protein AED:0.28 eAED:0.28 QI:746|1|0.5|1|0|0.5|2|0|281; (*GB) gi|225433730|ref|XP_002269673.1| (e_value=6e-109) PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q2V3H0|PP322_ARATH (e_value=4e-33) Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2;; (*TAIR) AT1G04590.1 (e_value=5e-88) | Symbols: | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:1258760-1261411 REVERSE LENGTH=381;; (*ITAG) Solyc04g056370.2.1 (e_value=1e-149) genomic_reference:SL2.40ch04 gene_region:53301563-53306177 transcript_region:SL2.40ch04:53301563..53306177- functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 *-*- PP332_ARATH)"; NbS00004746g0010.1 protein AED:0.16 eAED:0.18 QI:0|0.33|0|1|0.66|0.5|4|0|568; (*GB) gi|224059300|ref|XP_002299814.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=2e-18) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT1G07230.1 (e_value=0.0) | Symbols: NPC1 | non-specific phospholipase C1 | chr1:2220509-2222778 REVERSE LENGTH=533;; (*ITAG) Solyc09g020190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19185577-19189409 transcript_region:SL2.40ch09:19185577..19189409+ go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7KH02_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00004746g0103.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|378 NbS00009070g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|224091659|ref|XP_002309319.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46490.1 (e_value=1e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19079457-19079861 FORWARD LENGTH=134;; (*ITAG) Solyc07g007050.1.1 (e_value=8e-44) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1832990-1833349 transcript_region:SL2.40ch07:1832990..1833349+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009070g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|657; (*GB) gi|255565099|ref|XP_002523542.1| (e_value=0.0) Endosomal P24A protein precursor, putative [Ricinus communis];; (*SWP) sp|Q4KLL4|TM9S4_RAT (e_value=2e-154) Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT5G35160.2 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658;; (*ITAG) Solyc07g007030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1814999-1816972 transcript_region:SL2.40ch07:1814999..1816972- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 ***- B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00009070g0012.1 protein AED:0.12 eAED:0.12 QI:204|0.87|0.77|1|0.75|0.88|9|0|867; (*GB) gi|255565101|ref|XP_002523543.1| (e_value=7e-143) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q29RR5|TFP11_BOVIN (e_value=2e-11) Tuftelin-interacting protein 11 OS=Bos taurus GN=TFIP11 PE=2 SV=2;; (*TAIR) AT3G09850.1 (e_value=1e-104) | Symbols: | D111/G-patch domain-containing protein | chr3:3023397-3025742 REVERSE LENGTH=781;; (*ITAG) Solyc07g007040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1819149-1827662 transcript_region:SL2.40ch07:1819149..1827662- go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger CCCH-type with G patch domain-containing protein (AHRD V1 *--- ZGPAT_NEMVE); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0003676,GO:0005622 NbS00056686g0002.1 protein AED:0.01 eAED:0.01 QI:534|0|0.5|1|0|0.5|2|661|492; (*GB) gi|225427963|ref|XP_002277549.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Vitis vinifera];; (*SWP) sp|Q9SKQ4|PP167_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1;; (*TAIR) AT2G21090.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:9045695-9047488 REVERSE LENGTH=597;; (*ITAG) Solyc01g098480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80745537-80747732 transcript_region:SL2.40ch01:80745537..80747732- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LKZ8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00056686g0012.1 protein AED:0.21 eAED:0.20 QI:0|0.85|0.75|1|1|1|8|0|508; (*GB) gi|225427967|ref|XP_002277572.1| (e_value=0.0) PREDICTED: methyltransferase-like protein 16-like [Vitis vinifera];; (*SWP) sp|Q6DC64|MET16_DANRE (e_value=3e-66) Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2 SV=1;; (*TAIR) AT2G21070.1 (e_value=0.0) | Symbols: FIO1 | methyltransferases | chr2:9040940-9043136 FORWARD LENGTH=483;; (*ITAG) Solyc01g098460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80738870-80744394 transcript_region:SL2.40ch01:80738870..80744394+ go_terms:GO:0008168 functional_description:"Ribosomal RNA large subunit methyltransferase F (AHRD V1 ***- D0KHS1_PECWW); contains Interpro domain(s) IPR017182 S-adenosyl-L-methionine dependent methyltransferase, Mett10D, predicted "; GO:0008168 NbS00056686g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.84|0.94|0.83|0.78|19|276|495; (*GB) gi|298205028|emb|CBI34335.3| (e_value=9e-158) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3ECP7|ERDL5_ARATH (e_value=5e-145) Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2;; (*TAIR) AT1G54730.2 (e_value=4e-146) | Symbols: | Major facilitator superfamily protein | chr1:20424471-20429978 FORWARD LENGTH=470;; (*ITAG) Solyc01g098490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80751588-80755732 transcript_region:SL2.40ch01:80751588..80755732+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2 facilitated glucose transporter member 8 (AHRD V1 ***- B6SSR3_MAIZE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00024422g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|225460195|ref|XP_002279765.1| (e_value=7e-107) PREDICTED: uncharacterized protein LOC100255018 [Vitis vinifera];; (*TAIR) AT1G33800.1 (e_value=3e-102) | Symbols: | Protein of unknown function (DUF579) | chr1:12261480-12262456 FORWARD LENGTH=297;; (*ITAG) Solyc06g064800.1.1 (e_value=6e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36770123-36770917 transcript_region:SL2.40ch06:36770123..36770917+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00024422g0005.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|0|0|2|0|219; (*GB) gi|190607699|gb|ACE79508.1| (e_value=3e-33) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q6L439|R1A4_SOLDE (e_value=1e-19) Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=7e-17) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00038352g0004.1 protein AED:0.06 eAED:0.07 QI:0|0.25|0.2|1|0.25|0.4|5|0|514; (*GB) gi|359481952|ref|XP_002284018.2| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-176) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=2e-177) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc09g008720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2157113-2159992 transcript_region:SL2.40ch09:2157113..2159992+ go_terms:GO:0003824 functional_description:"Ethylene receptor (AHRD V1 *--- C0ILN8_COFCA); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00015515g0001.1 protein AED:0.19 eAED:0.19 QI:309|1|1|1|0.2|0.33|6|404|277; (*GB) gi|147766634|emb|CAN71843.1| (e_value=5e-131) hypothetical protein VITISV_036263 [Vitis vinifera];; (*SWP) sp|Q5XF11|FB248_ARATH (e_value=1e-94) F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1;; (*TAIR) AT4G35930.1 (e_value=1e-95) | Symbols: | F-box family protein | chr4:17019482-17020744 FORWARD LENGTH=321;; (*ITAG) Solyc03g033390.2.1 (e_value=1e-172) genomic_reference:SL2.40ch03 gene_region:9242801-9245006 transcript_region:SL2.40ch03:9242801..9245006+ functional_description:"F-box family protein (AHRD V1 *-*- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035051g0004.1 protein AED:0.28 eAED:0.28 QI:174|0.87|0.88|1|0.75|0.66|9|0|318; (*GB) gi|147828008|emb|CAN70796.1| (e_value=2e-122) hypothetical protein VITISV_029203 [Vitis vinifera];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=2e-99) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=2e-100) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc05g054230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63334861-63342158 transcript_region:SL2.40ch05:63334861..63342158- go_terms:GO:0008083 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008083 NbS00000529g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|121730616|ref|ZP_01682799.1| (e_value=1e-20) fatty oxidation complex alpha subunit [Vibrio cholerae V52]; NbS00000529g0002.1 protein AED:0.44 eAED:0.48 QI:0|0.66|0.5|1|1|1|4|0|104; (*GB) gi|224068340|ref|XP_002302713.1| (e_value=7e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VI10|SMD2_DROME (e_value=3e-46) Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=3 SV=1;; (*TAIR) AT3G62840.2 (e_value=9e-68) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:23235727-23236615 REVERSE LENGTH=108;; (*ITAG) Solyc09g075130.2.1 (e_value=2e-68) genomic_reference:SL2.40ch09 gene_region:62428848-62432417 transcript_region:SL2.40ch09:62428848..62432417- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein-like protein (AHRD V1 ***- Q8L3W7_ARATH); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00056549g0006.1 protein AED:0.34 eAED:0.34 QI:328|1|0.5|1|1|1|2|0|322; (*GB) gi|225429514|ref|XP_002279110.1| (e_value=0.0) PREDICTED: probable ADP,ATP carrier protein At5g56450 [Vitis vinifera];; (*SWP) sp|Q9FM86|ADT5_ARATH (e_value=1e-169) Probable ADP,ATP carrier protein At5g56450 OS=Arabidopsis thaliana GN=At5g56450 PE=2 SV=1;; (*TAIR) AT5G56450.1 (e_value=9e-171) | Symbols: | Mitochondrial substrate carrier family protein | chr5:22858772-22859764 REVERSE LENGTH=330;; (*ITAG) Solyc08g063010.2.1 (e_value=6e-148) genomic_reference:SL2.40ch08 gene_region:49711891-49713577 transcript_region:SL2.40ch08:49711891..49713577- go_terms:GO:0005471 functional_description:"ADP,ATP carrier protein 1, mitochondrial (AHRD V1 *-** ADT1_WHEAT); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00056549g0009.1 protein AED:0.22 eAED:0.22 QI:636|0.83|0.71|1|0.83|1|7|221|169; (*GB) gi|372477765|gb|AEX97077.1| (e_value=7e-26) nucleosome assembly protein [Malus x domestica];; (*TAIR) AT2G19480.3 (e_value=4e-18) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc08g063000.2.1 (e_value=1e-33) genomic_reference:SL2.40ch08 gene_region:49708954-49712049 transcript_region:SL2.40ch08:49708954..49712049+ go_terms:GO:0003677,GO:0042393 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0003677,GO:0042393 NbS00022406g0003.1 protein AED:0.25 eAED:0.25 QI:324|0.5|0.66|1|0.5|0.66|3|0|89; (*GB) gi|359480658|ref|XP_002278458.2| (e_value=2e-20) PREDICTED: small RNA degrading nuclease 3-like [Vitis vinifera];; (*TAIR) AT3G50100.1 (e_value=5e-13) | Symbols: SDN1 | small RNA degrading nuclease 1 | chr3:18578411-18580594 FORWARD LENGTH=409;; (*ITAG) Solyc10g084160.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63151765-63156391 transcript_region:SL2.40ch10:63151765..63156391+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease (AHRD V1 *-*- C0S8V0_PARBP); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00022406g0109.1 protein AED:0.46 eAED:0.46 QI:8|0.33|0|0.75|1|0.75|4|0|141 NbS00022406g0104.1 protein AED:0.65 eAED:0.69 QI:28|0.33|0.5|0.75|1|1|4|0|119 NbS00022406g0110.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.4|0.8|0|0.2|5|0|262 NbS00022406g0212.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0|1|2|0|311 NbS00022406g0209.1 protein AED:0.14 eAED:0.14 QI:233|1|1|1|1|1|4|419|272 NbS00010998g0008.1 protein AED:0.22 eAED:0.27 QI:289|0.5|0.42|1|0.33|0.42|7|0|256; (*GB) gi|305690311|gb|ADM64536.1| (e_value=2e-142) Arp2/3 complex p35 subunit [Nicotiana tabacum];; (*TAIR) AT1G30825.1 (e_value=4e-98) | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318;; (*ITAG) Solyc11g068610.1.1 (e_value=3e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50339390-50346971 transcript_region:SL2.40ch11:50339390..50346971+ go_terms:GO:0005200 functional_description:"Actin related protein 2/3 complex subunit 2 (AHRD V1 ***- D8RD91_SELML); contains Interpro domain(s) IPR007188 Arp2/3 complex, 34kDa subunit p34-Arc "; GO:0005200 NbS00026545g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.75|0|0.5|4|186|45 NbS00026545g0006.1 protein AED:0.37 eAED:0.47 QI:24|0.5|0.2|1|1|1|5|0|146; (*GB) gi|297740118|emb|CBI30300.3| (e_value=2e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SR77|HBPL1_ARATH (e_value=8e-30) Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1;; (*TAIR) AT3G10130.1 (e_value=6e-31) | Symbols: | SOUL heme-binding family protein | chr3:3131122-3133158 REVERSE LENGTH=309;; (*ITAG) Solyc10g083350.1.1 (e_value=3e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62513911-62518059 transcript_region:SL2.40ch10:62513911..62518059- functional_description:"Soul heme-binding family protein (AHRD V1 ***- D7L8V8_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; NbS00026545g0008.1 protein AED:0.35 eAED:0.35 QI:1569|0.5|0.66|1|1|1|3|0|345; (*GB) gi|225441650|ref|XP_002282324.1| (e_value=4e-105) PREDICTED: uncharacterized protein LOC100248614 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-31) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G04030.1 (e_value=7e-82) | Symbols: | Homeodomain-like superfamily protein | chr3:1042920-1044574 REVERSE LENGTH=388;; (*ITAG) Solyc10g083340.1.1 (e_value=2e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62499912-62502205 transcript_region:SL2.40ch10:62499912..62502205+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like (AHRD V1 *--- Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00050609g0005.1 protein AED:0.10 eAED:0.10 QI:490|1|1|1|1|1|6|439|270; (*GB) gi|147789805|emb|CAN62935.1| (e_value=2e-98) hypothetical protein VITISV_008845 [Vitis vinifera];; (*SWP) sp|Q66GR3|BH130_ARATH (e_value=4e-69) Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1;; (*TAIR) AT2G42280.1 (e_value=3e-70) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359;; (*ITAG) Solyc10g079050.1.1 (e_value=4e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60004857-60007346 transcript_region:SL2.40ch10:60004857..60007346- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00050609g0006.1 protein AED:0.12 eAED:0.14 QI:0|0.83|0.76|1|0.58|0.92|13|818|351; (*GB) gi|321265874|gb|ADW78251.1| (e_value=1e-176) squalene synthase [Withania somnifera];; (*SWP) sp|P53800|FDFT_NICBE (e_value=2e-174) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=2e-157) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc10g079060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60011312-60014883 transcript_region:SL2.40ch10:60011312..60014883- go_terms:GO:0009058,GO:0016021 functional_description:"Squalene synthase (AHRD V1 ***- Q9XF02_CAPAN); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0009058,GO:0016021 NbS00039947g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|225460662|ref|XP_002267096.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257198 isoform 1 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=3e-154) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc12g056550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47861646-47862782 transcript_region:SL2.40ch12:47861646..47862782+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00060323g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|139; (*GB) gi|255586840|ref|XP_002534031.1| (e_value=4e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70780.1 (e_value=3e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc02g091540.2.1 (e_value=1e-54) genomic_reference:SL2.40ch02 gene_region:47381016-47381951 transcript_region:SL2.40ch02:47381016..47381951+ functional_description:"Senescence-associated protein (AHRD V1 **-- B6UEV1_MAIZE)"; NbS00040803g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|3|0|642; (*GB) gi|15418714|gb|AAG31017.1| (e_value=9e-23) tospovirus resistance protein E [Solanum lycopersicum];; (*SWP) sp|P04464|CALM_WHEAT (e_value=6e-16) Calmodulin OS=Triticum aestivum PE=1 SV=3;; (*TAIR) AT3G43810.1 (e_value=3e-16) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc09g064680.1.1 (e_value=6e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:57622457-57624959 transcript_region:SL2.40ch09:57622457..57624959- go_terms:GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006915 NbS00040803g0010.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|357; (*GB) gi|15418710|gb|AAG31014.1| (e_value=3e-95) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=4e-79) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-53) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00026784g0008.1 protein AED:0.38 eAED:0.38 QI:50|0.85|0.80|1|0.5|0.57|21|458|691; (*GB) gi|350539637|ref|NP_001234742.1| (e_value=0.0) embryonic flower 2 [Solanum lycopersicum];; (*SWP) sp|Q8L6Y4|EMF2_ARATH (e_value=0.0) Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2;; (*TAIR) AT5G51230.1 (e_value=0.0) | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=631;; (*ITAG) Solyc03g093640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48624958-48655114 transcript_region:SL2.40ch03:48624958..48655114- go_terms:GO:0005515,GO:0003700 functional_description:"Polycomb group protein EMBRYONIC FLOWER 2 (AHRD V1 **-- EMF2_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00058896g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.33|0.5|1|0.66|0.75|4|301|223; (*GB) gi|225427441|ref|XP_002267479.1| (e_value=9e-49) PREDICTED: protein BREVIS RADIX [Vitis vinifera];; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=2e-47) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=1e-48) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc08g005460.2.1 (e_value=2e-78) genomic_reference:SL2.40ch08 gene_region:340586-346968 transcript_region:SL2.40ch08:340586..346968+ go_terms:GO:0042802,GO:0015250 functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; GO:0042802,GO:0015250 NbS00058896g0002.1 protein AED:0.18 eAED:0.18 QI:1159|0.94|1|1|0.94|0.89|19|599|472; (*GB) gi|359474639|ref|XP_002265359.2| (e_value=0.0) PREDICTED: cyclin-dependent kinase F-4-like [Vitis vinifera];; (*SWP) sp|Q6Z8C8|CDKF4_ORYSJ (e_value=0.0) Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1;; (*TAIR) AT4G19110.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:10454770-10457468 REVERSE LENGTH=461;; (*ITAG) Solyc08g005470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:347999-354065 transcript_region:SL2.40ch08:347999..354065- go_terms:GO:0005524 functional_description:"Cell division protein kinase 7 (AHRD V1 ***- CDK7_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005524 NbS00008257g0115.1 protein AED:0.38 eAED:0.38 QI:216|0.90|1|1|1|1|12|542|464 NbS00008257g0309.1 protein AED:0.16 eAED:0.16 QI:120|1|0.84|1|0.75|0.61|13|0|548 NbS00008257g0413.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.83|0.6|0.33|6|0|774 NbS00008257g0403.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|131 NbS00039972g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.4|0.33|1|0.4|0.66|6|444|533; (*GB) gi|164666156|gb|ABA56495.2| (e_value=0.0) transcription factor WRKY2 [Capsicum annuum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=1e-129) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=1e-130) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g012770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5928753-5934454 transcript_region:SL2.40ch05:5928753..5934454+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00039972g0006.1 protein AED:0.24 eAED:0.24 QI:216|0.9|0.81|1|0.7|0.72|11|130|490; (*GB) gi|356497938|ref|XP_003517813.1| (e_value=2e-170) PREDICTED: uncharacterized protein LOC100794541 [Glycine max];; (*TAIR) AT3G29180.2 (e_value=3e-149) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc05g012780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5938364-5941007 transcript_region:SL2.40ch05:5938364..5941007- functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00020255g0001.1 protein AED:0.05 eAED:0.05 QI:193|1|0.5|1|0|0|2|0|520; (*GB) gi|359473131|ref|XP_002282072.2| (e_value=2e-136) PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis vinifera];; (*TAIR) AT1G13190.1 (e_value=5e-64) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4499633-4501354 FORWARD LENGTH=573;; (*ITAG) Solyc05g013970.2.1 (e_value=1e-136) genomic_reference:SL2.40ch05 gene_region:7472163-7474324 transcript_region:SL2.40ch05:7472163..7474324+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- B5X2I3_SALSA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00020255g0010.1 protein AED:0.10 eAED:0.10 QI:542|0.55|0.6|0.9|0.44|0.5|10|280|742; (*GB) gi|225424570|ref|XP_002282089.1| (e_value=0.0) PREDICTED: oxysterol-binding protein-related protein 1D-like [Vitis vinifera];; (*SWP) sp|Q9SAF0|ORP1D_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 1D OS=Arabidopsis thaliana GN=ORP1D PE=2 SV=1;; (*TAIR) AT1G13170.1 (e_value=0.0) | Symbols: ORP1D | OSBP(oxysterol binding protein)-related protein 1D | chr1:4488826-4492278 REVERSE LENGTH=816;; (*ITAG) Solyc05g013960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7434048-7442037 transcript_region:SL2.40ch05:7434048..7442037+ go_terms:GO:0008142 functional_description:"Oxysterol-binding family protein (AHRD V1 **** D7KQC6_ARALY); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008142 NbS00039707g0003.1 protein AED:0.37 eAED:0.37 QI:0|0.6|0.83|1|1|1|6|591|446; (*GB) gi|3116212|dbj|BAA25921.1| (e_value=0.0) NTH23 [Nicotiana tabacum];; (*SWP) sp|P48000|KNAT3_ARATH (e_value=3e-145) Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1;; (*TAIR) AT5G25220.2 (e_value=2e-146) | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736208-8738087 FORWARD LENGTH=419;; (*ITAG) Solyc08g041820.2.1 (e_value=4e-165) genomic_reference:SL2.40ch08 gene_region:27254177-27258528 transcript_region:SL2.40ch08:27254177..27258528+ go_terms:GO:0005515 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00040411g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|356529801|ref|XP_003533476.1| (e_value=2e-60) PREDICTED: uncharacterized protein LOC100787678 [Glycine max];; (*TAIR) AT5G45320.1 (e_value=4e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18362354-18363053 REVERSE LENGTH=198;; (*ITAG) Solyc08g075230.1.1 (e_value=3e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56515261-56515857 transcript_region:SL2.40ch08:56515261..56515857- functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 ***- Q9FKU2_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00051543g0003.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|356556072|ref|XP_003546351.1| (e_value=8e-48) PREDICTED: major allergen Pru ar 1-like [Glycine max];; (*SWP) sp|O50001|PRU1_PRUAR (e_value=1e-35) Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1;; (*ITAG) Solyc03g117460.1.1 (e_value=3e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60667287-60667842 transcript_region:SL2.40ch03:60667287..60667842+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q43550_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00039419g0014.1 protein AED:0.26 eAED:0.28 QI:0|0.54|0.41|1|0.27|0.25|12|440|463; (*GB) gi|225442799|ref|XP_002285259.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242968 [Vitis vinifera];; (*TAIR) AT1G80280.1 (e_value=1e-168) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:30183839-30186141 REVERSE LENGTH=647;; (*ITAG) Solyc06g067890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38469559-38475823 transcript_region:SL2.40ch06:38469559..38475823+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7KX74_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00039419g0012.1 protein AED:0.10 eAED:0.10 QI:42|0.5|0.33|1|0.5|0.33|3|0|348; (*GB) gi|255553049|ref|XP_002517567.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11420.1 (e_value=3e-167) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc06g067910.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38479523-38482938 transcript_region:SL2.40ch06:38479523..38482938- functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00039419g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|1|0.66|3|0|308; (*GB) gi|225453772|ref|XP_002270342.1| (e_value=1e-72) PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1-like [Vitis vinifera];; (*TAIR) AT1G01930.1 (e_value=4e-38) | Symbols: | zinc finger protein-related | chr1:320041-322809 REVERSE LENGTH=580;; (*ITAG) Solyc01g091510.2.1 (e_value=7e-111) genomic_reference:SL2.40ch01 gene_region:76895097-76901949 transcript_region:SL2.40ch01:76895097..76901949- go_terms:GO:0005622 functional_description:"Ankyrin repeat and zinc finger domain containing protein 1 (AHRD V1 ***- B2WH31_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005622 NbS00039419g0013.1 protein AED:0.19 eAED:0.26 QI:0|0.71|0.5|1|0.57|0.5|8|0|292; (*GB) gi|7547401|gb|AAB28813.2| (e_value=4e-178) cytochrome c1 precursor [Solanum tuberosum];; (*SWP) sp|P25076|CY11_SOLTU (e_value=2e-178) Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1;; (*TAIR) AT5G40810.1 (e_value=2e-157) | Symbols: | Cytochrome C1 family | chr5:16340200-16342327 FORWARD LENGTH=307;; (*ITAG) Solyc12g042920.1.1 (e_value=7e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43815509-43821918 transcript_region:SL2.40ch12:43815509..43821918+ go_terms:GO:0020037 functional_description:"Cytochrome c1 (AHRD V1 ***- Q9FKS5_ARATH); contains Interpro domain(s) IPR002326 Cytochrome c1 "; GO:0020037 NbC24222145g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|89032979|gb|ABD59797.1| (e_value=5e-50) phenylalanine ammonia-lyase [Arnebia euchroma];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=4e-50) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=2e-48) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc09g007910.2.1 (e_value=3e-50) genomic_reference:SL2.40ch09 gene_region:1429132-1437334 transcript_region:SL2.40ch09:1429132..1437334+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00008749g0006.1 protein AED:0.09 eAED:0.09 QI:63|1|1|1|1|1|7|148|446; (*GB) gi|325516250|gb|ADZ24703.1| (e_value=0.0) tyrosine aminotransferase 2 [Solanum pennellii];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=6e-179) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=4e-180) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59464896-59468538 transcript_region:SL2.40ch07:59464896..59468538- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase-like protein (AHRD V1 **** Q9LVY1_ARATH); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00008749g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0|0.5|1|1|4|0|154; (*GB) gi|225441914|ref|XP_002278785.1| (e_value=4e-55) PREDICTED: DNA helicase INO80-like [Vitis vinifera];; (*SWP) sp|Q8RXS6|INO80_ARATH (e_value=1e-42) DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2;; (*TAIR) AT3G57300.2 (e_value=7e-44) | Symbols: INO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1540;; (*ITAG) Solyc04g016370.2.1 (e_value=3e-59) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00038895g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|356552029|ref|XP_003544374.1| (e_value=8e-79) PREDICTED: cyclin-J18-like [Glycine max];; (*SWP) sp|Q9C5X2|CCJ18_ARATH (e_value=2e-70) Cyclin-J18 OS=Arabidopsis thaliana GN=CYCJ18 PE=2 SV=2;; (*TAIR) AT2G01905.1 (e_value=1e-71) | Symbols: CYCJ18 | cyclin J18 | chr2:410373-413477 FORWARD LENGTH=234;; (*ITAG) Solyc04g078500.1.1 (e_value=6e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60823616-60824311 transcript_region:SL2.40ch04:60823616..60824311+ functional_description:"Cyclin J18 (AHRD V1 ***- D7LPW9_ARALY); contains Interpro domain(s) IPR013763 Cyclin-related "; NbS00038895g0003.1 protein AED:0.22 eAED:0.35 QI:90|0|0|1|0|0|3|0|152; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-45) hypothetical protein [Nicotiana tabacum]; NbS00031867g0006.1 protein AED:0.11 eAED:0.14 QI:0|0.33|0|0.75|1|1|4|0|400; (*GB) gi|225444211|ref|XP_002276337.1| (e_value=5e-130) PREDICTED: patatin group A-3 [Vitis vinifera];; (*TAIR) AT2G39220.1 (e_value=1e-90) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc10g078530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59645667-59647481 transcript_region:SL2.40ch10:59645667..59647481- go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00031867g0011.1 protein AED:0.03 eAED:0.03 QI:195|1|0.85|1|0.5|0.28|7|454|258; (*GB) gi|359482117|ref|XP_003632714.1| (e_value=2e-133) PREDICTED: PHD finger protein ING2-like [Vitis vinifera];; (*SWP) sp|B3H615|ING2_ARATH (e_value=4e-123) PHD finger protein ING2 OS=Arabidopsis thaliana GN=ING2 PE=1 SV=1;; (*TAIR) AT1G54390.3 (e_value=3e-124) | Symbols: ING2 | PHD finger protein-related | chr1:20305061-20306943 REVERSE LENGTH=262;; (*ITAG) Solyc10g078520.1.1 (e_value=1e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59637763-59641139 transcript_region:SL2.40ch10:59637763..59641139+ go_terms:GO:0008270 functional_description:"Inhibitor of growth protein 4 (AHRD V1 ***- C3KHB0_ANOFI); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00007724g0006.1 protein AED:0.00 eAED:0.00 QI:161|1|1|1|1|1|2|367|333; (*GB) gi|225464680|ref|XP_002275506.1| (e_value=1e-40) PREDICTED: probable membrane-associated kinase regulator 2-like [Vitis vinifera];; (*SWP) sp|Q9SH58|MAKR2_ARATH (e_value=3e-18) Probable membrane-associated kinase regulator 2 OS=Arabidopsis thaliana GN=MAKR2 PE=2 SV=1;; (*TAIR) AT1G64080.1 (e_value=2e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink). | chr1:23785230-23786557 REVERSE LENGTH=411;; (*ITAG) Solyc03g007700.1.1 (e_value=4e-140) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:2229811-2230734 transcript_region:SL2.40ch03:2229811..2230734+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007724g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|255545130|ref|XP_002513626.1| (e_value=2e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G46150.1 (e_value=3e-14) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00007724g0004.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|59 NbS00011701g0010.1 protein AED:0.11 eAED:0.11 QI:329|1|1|1|0.66|0.75|4|330|314; (*GB) gi|379055945|emb|CCG06554.1| (e_value=0.0) E3 ubiquitin ligase [Lotus japonicus];; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc03g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00011701g0014.1 protein AED:0.15 eAED:0.16 QI:0|0.75|0.64|0.88|0.81|0.82|17|0|572; (*GB) gi|307135876|gb|ADN33742.1| (e_value=0.0) ATP-dependent clp protease ATP-binding subunit clpx [Cucumis melo subsp. melo];; (*SWP) sp|A4XTZ6|CLPX_PSEMY (e_value=8e-132) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1;; (*TAIR) AT5G53350.1 (e_value=0.0) | Symbols: CLPX | CLP protease regulatory subunit X | chr5:21644060-21647503 FORWARD LENGTH=579;; (*ITAG) Solyc03g083250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46645114-46653685 transcript_region:SL2.40ch03:46645114..46653685+ go_terms:GO:0004176 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 **** B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0004176 NbS00011701g0013.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|647; (*GB) gi|225455374|ref|XP_002272755.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Vitis vinifera];; (*SWP) sp|Q9M3A8|PP273_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1;; (*TAIR) AT3G49240.1 (e_value=0.0) | Symbols: emb1796 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18256086-18257975 FORWARD LENGTH=629;; (*ITAG) Solyc03g083280.2.1 (e_value=2e-133) genomic_reference:SL2.40ch03 gene_region:46666655-46668863 transcript_region:SL2.40ch03:46666655..46668863- go_terms:GO:0005515,GO:0005524 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005515,GO:0005524 NbS00053095g0007.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0.33|1|1|1|3|0|361; (*GB) gi|225438801|ref|XP_002283225.1| (e_value=3e-174) PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera];; (*SWP) sp|Q6P1R4|DUS1L_HUMAN (e_value=3e-67) tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1;; (*TAIR) AT5G67220.1 (e_value=2e-157) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr5:26820276-26821926 REVERSE LENGTH=423;; (*ITAG) Solyc03g044270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12574009-12578579 transcript_region:SL2.40ch03:12574009..12578579- go_terms:GO:0005515,GO:0017150 functional_description:"tRNA-dihydrouridine synthase 1-like protein (AHRD V1 **** D3BAF6_POLPA); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0005515,GO:0017150 NbS00053095g0008.1 protein AED:0.41 eAED:0.41 QI:288|0.66|0.75|1|0.66|0.25|4|0|49; (*GB) gi|388503580|gb|AFK39856.1| (e_value=5e-19) unknown [Lotus japonicus];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=5e-18) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=4e-19) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc03g044260.2.1 (e_value=4e-22) genomic_reference:SL2.40ch03 gene_region:12566720-12571878 transcript_region:SL2.40ch03:12566720..12571878+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00020618g0008.1 protein AED:0.05 eAED:0.09 QI:0|0.25|0|0.8|0.5|0.4|5|0|518; (*GB) gi|299893504|gb|ADJ57933.1| (e_value=0.0) cytochrome P450 [Solanum torvum];; (*SWP) sp|P37124|C77A2_SOLME (e_value=0.0) Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1;; (*TAIR) AT5G04660.1 (e_value=0.0) | Symbols: CYP77A4 | cytochrome P450, family 77, subfamily A, polypeptide 4 | chr5:1336049-1337587 FORWARD LENGTH=512;; (*ITAG) Solyc05g055400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64202129-64204627 transcript_region:SL2.40ch05:64202129..64204627- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00020618g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|1|1|0|0|3|173|194; (*GB) gi|225449738|ref|XP_002270953.1| (e_value=7e-80) PREDICTED: RING-H2 finger protein ATL38 [Vitis vinifera];; (*SWP) sp|Q9SN27|ATL59_ARATH (e_value=6e-18) E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1;; (*TAIR) AT4G10160.1 (e_value=4e-19) | Symbols: | RING/U-box superfamily protein | chr4:6336023-6337301 FORWARD LENGTH=225;; (*ITAG) Solyc05g055390.2.1 (e_value=8e-112) genomic_reference:SL2.40ch05 gene_region:64196853-64201334 transcript_region:SL2.40ch05:64196853..64201334+ go_terms:GO:0005515,GO:0004842 functional_description:"Ring finger protein (AHRD V1 *-*- D7FY13_ECTSI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00009197g0006.1 protein AED:0.22 eAED:0.22 QI:172|1|1|1|0.66|0.57|7|446|493; (*GB) gi|225435008|ref|XP_002281203.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248378 [Vitis vinifera];; (*TAIR) AT3G46450.1 (e_value=5e-172) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486;; (*ITAG) Solyc06g075980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43563647-43569037 transcript_region:SL2.40ch06:43563647..43569037- go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein (AHRD V1 **-- B6U4K1_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00009197g0109.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|805 NbS00009197g0102.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|103 NbS00034501g0003.1 protein AED:0.22 eAED:0.22 QI:114|1|1|1|1|1|4|326|135; (*GB) gi|255573541|ref|XP_002527695.1| (e_value=2e-58) glutaredoxin-1, grx1, putative [Ricinus communis];; (*SWP) sp|Q8LFQ6|GRXC4_ARATH (e_value=3e-59) Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2;; (*TAIR) AT5G20500.1 (e_value=2e-60) | Symbols: | Glutaredoxin family protein | chr5:6938652-6939665 FORWARD LENGTH=135;; (*ITAG) Solyc11g069860.1.1 (e_value=3e-70) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51566625-51571040 transcript_region:SL2.40ch11:51566625..51571040+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- Q8S3L1_9ROSI); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0045454 NbS00047418g0008.1 protein AED:0.13 eAED:0.13 QI:404|1|0.85|1|0.83|0.57|7|0|330; (*GB) gi|255545652|ref|XP_002513886.1| (e_value=0.0) phosphoglycerate mutase, putative [Ricinus communis];; (*SWP) sp|Q6MEW4|GPMA_PARUW (e_value=2e-99) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Protochlamydia amoebophila (strain UWE25) GN=gpmA PE=3 SV=1;; (*TAIR) AT1G22170.1 (e_value=2e-165) | Symbols: | Phosphoglycerate mutase family protein | chr1:7826603-7828055 FORWARD LENGTH=334;; (*ITAG) Solyc04g072800.2.1 (e_value=3e-160) genomic_reference:SL2.40ch04 gene_region:57368160-57370526 transcript_region:SL2.40ch04:57368160..57370526+ go_terms:GO:0046538,GO:0019901 functional_description:"2 3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 **** D1R850_9CHLA); contains Interpro domain(s) IPR005952 Phosphoglycerate mutase 1 "; GO:0046538,GO:0019901 NbS00047418g0005.1 protein AED:0.27 eAED:0.28 QI:251|0.5|0.57|0.85|0.5|0.57|7|333|371; (*GB) gi|255545658|ref|XP_002513889.1| (e_value=2e-149) transporter, putative [Ricinus communis];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=8e-30) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G22180.2 (e_value=5e-127) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:7828434-7829745 REVERSE LENGTH=314;; (*ITAG) Solyc04g072810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57370862-57376125 transcript_region:SL2.40ch04:57370862..57376125- go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00060544g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.5|0.66|3|338|97; (*GB) gi|297845346|ref|XP_002890554.1| (e_value=1e-51) hypothetical protein ARALYDRAFT_472563 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P34893|CH10_ARATH (e_value=2e-52) 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=2 SV=1;; (*TAIR) AT1G14980.1 (e_value=2e-53) | Symbols: CPN10 | chaperonin 10 | chr1:5165930-5166654 REVERSE LENGTH=98;; (*ITAG) Solyc05g056390.2.1 (e_value=7e-63) genomic_reference:SL2.40ch05 gene_region:64858695-64859957 transcript_region:SL2.40ch05:64858695..64859957+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 ***- O24186_ORYSA); contains Interpro domain(s) IPR001476 Chaperonin Cpn10 "; GO:0051087 NbS00030797g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|224082910|ref|XP_002306888.1| (e_value=6e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=8e-21) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=5e-46) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc04g080740.1.1 (e_value=1e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62438744-62439187 transcript_region:SL2.40ch04:62438744..62439187+ go_terms:GO:0046982 functional_description:"BZIP transcription factor family protein (AHRD V1 **-- D7KSN7_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0046982 NbC24291329g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|255542002|ref|XP_002512065.1| (e_value=9e-18) SP1L, putative [Ricinus communis];; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=5e-13) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=4e-14) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc05g012160.2.1 (e_value=5e-33) genomic_reference:SL2.40ch05 gene_region:5356573-5358187 transcript_region:SL2.40ch05:5356573..5358187- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00004778g0003.1 protein AED:0.44 eAED:0.45 QI:0|1|0.33|1|1|0.66|3|0|142; (*GB) gi|357521263|ref|XP_003630920.1| (e_value=1e-76) Ubiquitin-conjugating enzyme E2 variant 1B [Medicago truncatula];; (*SWP) sp|Q93YP0|UEV1A_ARATH (e_value=7e-73) Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1;; (*TAIR) AT1G23260.1 (e_value=5e-74) | Symbols: MMZ1, UEV1A | MMS ZWEI homologue 1 | chr1:8257209-8258573 REVERSE LENGTH=158;; (*ITAG) Solyc04g007970.2.1 (e_value=4e-85) genomic_reference:SL2.40ch04 gene_region:1622530-1631005 transcript_region:SL2.40ch04:1622530..1631005- go_terms:GO:0042803 functional_description:"Ubiquitin-conjugating enzyme E2 variant 1 (AHRD V1 ***- B6T4J0_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0042803 NbS00030247g0013.1 protein AED:0.32 eAED:0.34 QI:10|0.85|0.86|1|0.92|0.93|15|0|569; (*GB) gi|224055474|ref|XP_002298511.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96PB1|CASD1_HUMAN (e_value=5e-51) CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1;; (*TAIR) AT2G34410.2 (e_value=0.0) | Symbols: | O-acetyltransferase family protein | chr2:14518719-14522053 FORWARD LENGTH=540;; (*ITAG) Solyc02g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35176956-35184955 transcript_region:SL2.40ch02:35176956..35184955+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00030247g0012.1 protein AED:0.09 eAED:0.09 QI:141|1|1|1|0.5|0.66|3|355|353; (*GB) gi|255557405|ref|XP_002519733.1| (e_value=2e-70) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q93WV4|WRK71_ARATH (e_value=3e-53) Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1;; (*TAIR) AT1G29860.1 (e_value=2e-54) | Symbols: WRKY71, ATWRKY71 | WRKY DNA-binding protein 71 | chr1:10454482-10455652 FORWARD LENGTH=282;; (*ITAG) Solyc02g071130.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:35189131-35190735 transcript_region:SL2.40ch02:35189131..35190735- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 ***- C9DI18_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00030980g0002.1 protein AED:0.14 eAED:0.24 QI:0|0|0|1|1|0.5|2|0|150; (*GB) gi|57013949|ref|YP_173349.1| (e_value=1e-56) NADH dehydrogenase subunit 5 [Nicotiana tabacum];; (*SWP) sp|P29388|NU5M_ARATH (e_value=4e-52) NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana GN=ND5 PE=2 SV=3;; (*ITAG) ATMG00665.1 (e_value=5e-46) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669;; (*ITAG) Solyc00g013140.1.1 (e_value=4e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10682531-10684357 transcript_region:SL2.40ch00:10682531..10684357- go_terms:GO:0055114 functional_description:"NADH dehydrogenase subunit 5 (Fragment) (AHRD V1 ***- A1XJP5_SIMCH); contains Interpro domain(s) IPR003945 NADH-plastoquinone oxidoreductase, chain 5 "; GO:0055114 NbS00013370g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|225435279|ref|XP_002285068.1| (e_value=6e-79) PREDICTED: fasciclin-like arabinogalactan protein 11-like [Vitis vinifera];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=3e-70) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=3e-71) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc06g075220.1.1 (e_value=1e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43067777-43068526 transcript_region:SL2.40ch06:43067777..43068526+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 5 (AHRD V1 ***- A9XTL0_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00014051g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|255553335|ref|XP_002517709.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=0.0) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00022023g0014.1 protein AED:0.07 eAED:0.07 QI:524|0.8|0.5|1|0.6|0.5|6|0|905; (*GB) gi|359488171|ref|XP_002280570.2| (e_value=2e-150) PREDICTED: uncharacterized protein LOC100263470 [Vitis vinifera];; (*TAIR) AT1G67040.1 (e_value=4e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.3); Has 89 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25019105-25021922 REVERSE LENGTH=826;; (*ITAG) Solyc02g086130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43474986-43479696 transcript_region:SL2.40ch02:43474986..43479696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022023g0015.1 protein AED:0.28 eAED:0.29 QI:621|0.92|0.85|1|0.92|0.85|14|362|544; (*GB) gi|8347244|gb|AAF74566.1|AF215852_1 (e_value=0.0) hexose transporter [Nicotiana tabacum];; (*SWP) sp|Q56ZZ7|PLST4_ARATH (e_value=0.0) Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2;; (*TAIR) AT5G16150.3 (e_value=0.0) | Symbols: GLT1, PGLCT | plastidic GLC translocator | chr5:5272904-5275678 FORWARD LENGTH=546;; (*ITAG) Solyc02g086160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43489233-43498866 transcript_region:SL2.40ch02:43489233..43498866+ go_terms:GO:0015519 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00022023g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|147799839|emb|CAN61843.1| (e_value=4e-51) hypothetical protein VITISV_004818 [Vitis vinifera];; (*TAIR) AT1G67035.2 (e_value=8e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38300.1). | chr1:25018173-25018862 FORWARD LENGTH=229;; (*ITAG) Solyc02g086140.1.1 (e_value=2e-101) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43480007-43480693 transcript_region:SL2.40ch02:43480007..43480693- functional_description:"Genomic DNA chromosome 5 P1 clone MSI17 (AHRD V1 ***- Q9FKN3_ARATH)"; NbS00022023g0019.1 protein AED:0.59 eAED:0.64 QI:71|0.25|0.22|0.77|0.62|0.55|9|0|242; (*GB) gi|224079329|ref|XP_002305823.1| (e_value=1e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M5P4|CRS2_MAIZE (e_value=3e-116) Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1;; (*TAIR) AT5G16140.2 (e_value=4e-116) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:5270308-5271517 REVERSE LENGTH=240;; (*ITAG) Solyc02g086150.2.1 (e_value=2e-91) genomic_reference:SL2.40ch02 gene_region:43481159-43484960 transcript_region:SL2.40ch02:43481159..43484960- go_terms:GO:0005515,GO:0004045 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 **** D7M817_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515,GO:0004045 NbS00050910g0003.1 protein AED:0.11 eAED:0.11 QI:44|0.66|0.25|1|1|1|4|0|419; (*GB) gi|8778860|gb|AAF79859.1|AC000348_12 (e_value=3e-78) T7N9.20 [Arabidopsis thaliana];; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=5e-59) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=4e-60) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g006750.2.1 (e_value=3e-82) genomic_reference:SL2.40ch05 gene_region:1381588-1382811 transcript_region:SL2.40ch05:1381588..1382811+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase 1 (AHRD V1 **** C8KH57_DIOKA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00010373g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|429; (*GB) gi|225432856|ref|XP_002283882.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100251040 isoform 1 [Vitis vinifera];; (*TAIR) AT3G22970.1 (e_value=3e-98) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc06g053910.2.1 (e_value=4e-159) genomic_reference:SL2.40ch06 gene_region:33294347-33296503 transcript_region:SL2.40ch06:33294347..33296503- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00000948g0004.1 protein AED:0.06 eAED:0.08 QI:0|0.66|0.25|1|0.33|0.25|4|0|345; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=2e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96330|FLS1_ARATH (e_value=3e-32) Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1;; (*TAIR) AT5G08640.2 (e_value=2e-33) | Symbols: FLS1 | flavonol synthase 1 | chr5:2804009-2805175 FORWARD LENGTH=336;; (*ITAG) Solyc03g116290.1.1 (e_value=5e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59822418-59824195 transcript_region:SL2.40ch03:59822418..59824195+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 **-* G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00008399g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.66|1|1|1|3|0|139; (*GB) gi|356539002|ref|XP_003537989.1| (e_value=6e-56) PREDICTED: uncharacterized protein C20orf24 homolog [Glycine max];; (*SWP) sp|Q9CQT9|CT024_MOUSE (e_value=1e-20) Uncharacterized protein C20orf24 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G59410.1 (e_value=3e-54) | Symbols: | Rab5-interacting family protein | chr5:23959761-23960730 REVERSE LENGTH=130;; (*ITAG) Solyc06g076260.2.1 (e_value=4e-70) genomic_reference:SL2.40ch06 gene_region:43767995-43772373 transcript_region:SL2.40ch06:43767995..43772373- go_terms:GO:0005515 functional_description:"C20orf24 homolog (AHRD V1 **-- C1BLD2_OSMMO); contains Interpro domain(s) IPR010742 Rab5-interacting "; GO:0005515 NbS00018036g0014.1 protein AED:0.05 eAED:0.05 QI:193|0.5|0.33|1|0.5|0.33|3|348|128; (*GB) gi|359479174|ref|XP_003632230.1| (e_value=1e-82) PREDICTED: calmodulin-related protein isoform 4 [Vitis vinifera];; (*SWP) sp|P48976|CALM_MALDO (e_value=8e-84) Calmodulin OS=Malus domestica GN=CAM PE=3 SV=2;; (*TAIR) AT3G43810.1 (e_value=6e-85) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=5e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00018036g0010.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.33|3|0|407; (*GB) gi|225425902|ref|XP_002271378.1| (e_value=5e-123) PREDICTED: signal recognition particle 72 kDa protein [Vitis vinifera];; (*SWP) sp|P33731|SRP72_CANFA (e_value=9e-19) Signal recognition particle 72 kDa protein OS=Canis familiaris GN=SRP72 PE=1 SV=3;; (*TAIR) AT1G67680.1 (e_value=2e-107) | Symbols: | SRP72 RNA-binding domain | chr1:25365962-25368464 REVERSE LENGTH=664;; (*ITAG) Solyc11g062270.1.1 (e_value=1e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46260806-46267465 transcript_region:SL2.40ch11:46260806..46267465+ go_terms:GO:0005047 functional_description:"Signal recognition particle protein (SRP72) (AHRD V1 *-** Q5CNY3_CRYHO); contains Interpro domain(s) IPR013699 Signal recognition particle, SRP72 subunit, RNA-binding "; GO:0005047 NbS00018036g0009.1 protein AED:0.43 eAED:0.43 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|245; (*GB) gi|42540596|gb|AAS19201.1| (e_value=3e-143) GAL83 [Nicotiana attenuata];; (*SWP) sp|Q84VQ1|KINB1_ARATH (e_value=7e-98) SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1;; (*TAIR) AT5G21170.1 (e_value=5e-99) | Symbols: AKINBETA1 | 5'-AMP-activated protein kinase beta-2 subunit protein | chr5:7205718-7208239 FORWARD LENGTH=283;; (*ITAG) Solyc12g099970.1.1 (e_value=3e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65242252-65245386 transcript_region:SL2.40ch12:65242252..65245386+ go_terms:GO:0019901 functional_description:"5-amp-activated protein kinase beta subunit (AHRD V1 **** Q17IU7_AEDAE); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00017997g0001.1 protein AED:0.35 eAED:0.48 QI:212|1|0.66|1|0|0|3|0|33; (*ITAG) Solyc10g074490.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57364037-57368763 transcript_region:SL2.40ch10:57364037..57368763- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00017997g0106.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.33|1|1|1|3|223|347 NbS00017997g0205.1 protein AED:0.34 eAED:0.34 QI:226|1|0.75|1|0.66|0.5|4|224|168 NbS00017997g0212.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.16|1|1|6|0|183 NbS00017997g0215.1 protein AED:0.04 eAED:0.04 QI:120|1|1|1|0.75|0.8|5|732|204 NbS00017997g0203.1 protein AED:0.04 eAED:0.07 QI:0|0.8|0.16|1|1|1|6|0|825 NbS00008972g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|87 NbS00009748g0005.1 protein AED:0.14 eAED:0.14 QI:139|0.71|0.75|1|0.57|0.62|8|89|486; (*GB) gi|1777921|gb|AAB40608.1| (e_value=0.0) glutamate decarboxylase [Nicotiana tabacum];; (*SWP) sp|Q07346|DCE_PETHY (e_value=0.0) Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1;; (*TAIR) AT2G02010.1 (e_value=0.0) | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474375-476495 REVERSE LENGTH=493;; (*ITAG) Solyc11g011920.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4848830-4855228 transcript_region:SL2.40ch11:4848830..4855228- go_terms:GO:0006536,GO:0030170,GO:0019752 functional_description:"Glutamate decarboxylase (AHRD V1 ***- Q8LKR4_TOBAC); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0006536,GO:0030170,GO:0019752 NbS00009748g0101.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|600 NbS00041978g0005.1 protein AED:0.20 eAED:0.20 QI:220|0.89|0.9|1|0.89|0.9|20|312|762; (*GB) gi|356545299|ref|XP_003541081.1| (e_value=0.0) PREDICTED: phospholipase A-2-activating protein-like [Glycine max];; (*SWP) sp|P27612|PLAP_MOUSE (e_value=6e-98) Phospholipase A-2-activating protein OS=Mus musculus GN=Plaa PE=2 SV=4;; (*TAIR) AT3G18860.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6501774-6508352 FORWARD LENGTH=760;; (*ITAG) Solyc01g109350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88074430-88092656 transcript_region:SL2.40ch01:88074430..88092656- go_terms:GO:0043130 functional_description:"WD-40 repeat-containing protein (AHRD V1 **-- D2VK35_NAEGR); contains Interpro domain(s) IPR013535 PUL "; GO:0043130 NbS00018496g0001.1 protein AED:0.38 eAED:0.54 QI:0|0|0|1|1|1|2|0|64; (*GB) gi|225441581|ref|XP_002281530.1| (e_value=4e-25) PREDICTED: 40S ribosomal protein S28-like [Vitis vinifera];; (*SWP) sp|P46302|RS28_MAIZE (e_value=8e-22) 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1;; (*TAIR) AT5G64140.1 (e_value=7e-22) | Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64;; (*ITAG) Solyc10g078630.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbC23994419g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|0|1|0|63; (*GB) gi|147818474|emb|CAN74119.1| (e_value=1e-21) hypothetical protein VITISV_002050 [Vitis vinifera];; (*TAIR) AT3G62920.1 (e_value=8e-22) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23260717-23261171 FORWARD LENGTH=80;; (*ITAG) Solyc09g074620.2.1 (e_value=7e-38) genomic_reference:SL2.40ch09 gene_region:61937997-61940486 transcript_region:SL2.40ch09:61937997..61940486- functional_description:"Unknown Protein (AHRD V1)"; NbS00050037g0002.1 protein AED:0.28 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|201; (*GB) gi|296088981|emb|CBI38684.3| (e_value=5e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g009320.2.1 (e_value=2e-23) genomic_reference:SL2.40ch10 gene_region:3390698-3395700 transcript_region:SL2.40ch10:3390698..3395700- functional_description:"Unknown Protein (AHRD V1)"; NbS00002044g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|273; (*GB) gi|226872|prf||1609235A (e_value=3e-155) chlorophyll a/b binding protein;; (*SWP) sp|P27522|CB13_SOLLC (e_value=4e-156) Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1;; (*TAIR) AT1G61520.3 (e_value=2e-149) | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700152-22701149 FORWARD LENGTH=273;; (*ITAG) Solyc12g011280.1.1 (e_value=1e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4139454-4140793 transcript_region:SL2.40ch12:4139454..4140793- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 8, chloroplastic (AHRD V1 ***- CB13_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00002044g0008.1 protein AED:0.19 eAED:0.19 QI:375|1|1|1|0.5|0.57|7|290|211; (*GB) gi|356555789|ref|XP_003546212.1| (e_value=2e-134) PREDICTED: ras-related protein RABB1c-like [Glycine max];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=1e-135) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=1e-136) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc10g007700.2.1 (e_value=3e-136) genomic_reference:SL2.40ch10 gene_region:1953681-1958548 transcript_region:SL2.40ch10:1953681..1958548- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00034563g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.8|0.72|1|0.8|0.63|11|0|691; (*GB) gi|224133454|ref|XP_002328046.1| (e_value=4e-176) aminotransferase family protein [Populus trichocarpa];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=3e-152) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=2e-153) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59459841-59463049 transcript_region:SL2.40ch07:59459841..59463049- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00034563g0008.1 protein AED:0.37 eAED:0.64 QI:0|0|0|0.5|0|0|4|0|106 NbS00055362g0004.1 protein AED:0.09 eAED:0.09 QI:74|1|1|1|1|1|5|372|397; (*GB) gi|27752361|gb|AAO19451.1| (e_value=0.0) glucose-6-phosphate/phosphate translocator 2 [Solanum tuberosum];; (*SWP) sp|Q94B38|GPT2_ARATH (e_value=2e-178) Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2;; (*TAIR) AT1G61800.1 (e_value=1e-179) | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388;; (*ITAG) Solyc05g045670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56569409-56572667 transcript_region:SL2.40ch05:56569409..56572667+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** Q84Y17_SOLTU); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00018555g0003.1 protein AED:0.22 eAED:0.22 QI:119|1|1|1|1|1|5|969|159; (*GB) gi|78100187|sp|P69039.1|IF5A1_NICPL (e_value=1e-114) RecName: Full=Eukaryotic translation initiation factor 5A-1; Short=eIF-5A-1; AltName: Full=eIF-4D;; (*SWP) sp|P69040|IF5A1_TOBAC (e_value=3e-116) Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1;; (*TAIR) AT1G13950.1 (e_value=2e-101) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc03g115650.2.1 (e_value=5e-112) genomic_reference:SL2.40ch03 gene_region:59340664-59343595 transcript_region:SL2.40ch03:59340664..59343595+ go_terms:GO:0003743,GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A "; GO:0003743,GO:0047485 NbS00019287g0006.1 protein AED:0.19 eAED:0.20 QI:0|0.83|0.42|0.85|1|1|7|0|436; (*GB) gi|357438945|ref|XP_003589749.1| (e_value=0.0) Type II inositol-1,4,5-trisphosphate 5-phosphatase [Medicago truncatula];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=6e-85) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc01g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82959-86723 transcript_region:SL2.40ch01:82959..86723- go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00019287g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.7|1|1|1|10|0|603; (*GB) gi|255561807|ref|XP_002521913.1| (e_value=0.0) PLE, putative [Ricinus communis];; (*SWP) sp|Q9SIS3|MA656_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1;; (*TAIR) AT2G01910.1 (e_value=0.0) | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated protein (MAP65/ASE1) family protein | chr2:417191-420182 FORWARD LENGTH=608;; (*ITAG) Solyc01g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67325-72180 transcript_region:SL2.40ch01:67325..72180- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** C0J9Z7_ORYNI); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00019287g0005.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|224099617|ref|XP_002311553.1| (e_value=7e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FRH3|CAP13_ARATH (e_value=1e-108) Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=2 SV=1;; (*TAIR) AT1G25240.1 (e_value=1e-109) | Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846361 FORWARD LENGTH=376;; (*ITAG) Solyc01g005070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:65457-66982 transcript_region:SL2.40ch01:65457..66982+ go_terms:GO:0005488 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TYB1_MAIZE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00019287g0013.1 protein AED:0.13 eAED:0.13 QI:826|1|1|1|0.5|0.33|9|327|267; (*GB) gi|357519249|ref|XP_003629913.1| (e_value=8e-20) ATP synthase subunit-like protein [Medicago truncatula];; (*ITAG) Solyc01g073870.2.1 (e_value=4e-119) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00019287g0012.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|129; (*GB) gi|57013966|ref|YP_173438.1| (e_value=3e-24) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00021959g0006.1 protein AED:0.23 eAED:0.28 QI:0|0.6|0.43|1|0.53|0.5|16|0|845; (*GB) gi|225442523|ref|XP_002278786.1| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera];; (*SWP) sp|Q67JH0|FTSH3_SYMTH (e_value=8e-92) ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum GN=ftsH3 PE=3 SV=1;; (*TAIR) AT3G16290.1 (e_value=0.0) | Symbols: EMB2083 | AAA-type ATPase family protein | chr3:5521187-5524995 REVERSE LENGTH=876;; (*ITAG) Solyc12g044400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44759933-44772028 transcript_region:SL2.40ch12:44759933..44772028- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00008579g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|225470986|ref|XP_002265503.1| (e_value=2e-32) PREDICTED: MADS-box transcription factor 27 [Vitis vinifera];; (*SWP) sp|Q6Z6W2|MAD57_ORYSJ (e_value=5e-33) MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2;; (*TAIR) AT2G14210.1 (e_value=3e-33) | Symbols: ANR1, AGL44 | AGAMOUS-like 44 | chr2:6018841-6023585 FORWARD LENGTH=234;; (*ITAG) Solyc02g091550.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00002635g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|225431723|ref|XP_002268447.1| (e_value=3e-15) PREDICTED: uncharacterized protein LOC100253295 [Vitis vinifera];; (*TAIR) AT3G06890.1 (e_value=3e-13) | Symbols: | unknown protein; Has 91 Blast hits to 91 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2176949-2177335 FORWARD LENGTH=128;; (*ITAG) Solyc12g099500.1.1 (e_value=1e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64967836-64968195 transcript_region:SL2.40ch12:64967836..64968195- functional_description:"Unknown Protein (AHRD V1)"; NbS00047968g0009.1 protein AED:0.12 eAED:0.12 QI:122|1|0.83|1|1|1|6|0|452; (*GB) gi|359490478|ref|XP_002273113.2| (e_value=0.0) PREDICTED: uncharacterized membrane protein yjcL-like [Vitis vinifera];; (*SWP) sp|O31634|YJCL_BACSU (e_value=4e-46) Uncharacterized membrane protein yjcL OS=Bacillus subtilis (strain 168) GN=yjcL PE=4 SV=1;; (*TAIR) AT5G52540.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF819) | chr5:21321672-21323702 REVERSE LENGTH=461;; (*ITAG) Solyc07g007970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2660220-2667792 transcript_region:SL2.40ch07:2660220..2667792+ functional_description:"Conserved membrane protein YjcL (AHRD V1 **-- D1Y6F9_9BACT); contains Interpro domain(s) IPR008537 Protein of unknown function DUF819 "; NbS00047968g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.66|0.83|0.8|0.66|6|264|287; (*GB) gi|225454759|ref|XP_002274164.1| (e_value=5e-126) PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera];; (*TAIR) AT4G17720.1 (e_value=9e-111) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc03g097110.2.1 (e_value=2e-143) genomic_reference:SL2.40ch03 gene_region:52892623-52898264 transcript_region:SL2.40ch03:52892623..52898264- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00049949g0003.1 protein AED:0.13 eAED:0.13 QI:207|0.5|0.6|1|1|1|5|176|603; (*GB) gi|257831433|gb|ACV71017.1| (e_value=0.0) UPA17 [Capsicum annuum];; (*TAIR) AT2G22840.1 (e_value=1e-88) | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530;; (*ITAG) Solyc04g077510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60063410-60066582 transcript_region:SL2.40ch04:60063410..60066582+ go_terms:GO:0005515,GO:0016563 functional_description:"Growth regulating factor 1 (Fragment) (AHRD V1 *--- A6MZS4_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005515,GO:0016563 NbS00018865g0002.1 protein AED:0.03 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|255557421|ref|XP_002519741.1| (e_value=6e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29820.2 (e_value=3e-52) | Symbols: | Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540;; (*ITAG) Solyc02g021490.1.1 (e_value=2e-114) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:13682623-13683318 transcript_region:SL2.40ch02:13682623..13683318- functional_description:"Unknown Protein (AHRD V1)"; NbS00018865g0005.1 protein AED:0.69 eAED:0.80 QI:0|1|0.5|1|1|1|2|7|251; (*GB) gi|359483816|ref|XP_002271436.2| (e_value=6e-12) PREDICTED: uncharacterized protein LOC100245309 [Vitis vinifera];; (*ITAG) Solyc02g071320.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:35370359-35375355 transcript_region:SL2.40ch02:35370359..35375355- functional_description:"Unknown Protein (AHRD V1)"; NbS00008601g0003.1 protein AED:0.18 eAED:0.18 QI:86|0.5|0.33|0.66|1|0.66|3|0|171; (*GB) gi|359481242|ref|XP_002266872.2| (e_value=6e-15) PREDICTED: uncharacterized protein LOC100241389 [Vitis vinifera];; (*TAIR) AT2G38500.1 (e_value=4e-15) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:16117610-16119041 REVERSE LENGTH=356; NbS00051004g0004.1 protein AED:0.15 eAED:0.15 QI:439|1|0.8|1|0.88|0.8|10|0|510; (*GB) gi|45387415|gb|AAS60198.1| (e_value=0.0) hexokinase 6 [Nicotiana tabacum];; (*SWP) sp|Q9LPS1|HXK3_ARATH (e_value=0.0) Hexokinase-3 OS=Arabidopsis thaliana GN=At1g50460 PE=1 SV=1;; (*TAIR) AT1G50460.1 (e_value=0.0) | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:18694031-18697429 FORWARD LENGTH=498;; (*ITAG) Solyc11g065220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47666953-47671142 transcript_region:SL2.40ch11:47666953..47671142+ go_terms:GO:0006096,GO:0005975 functional_description:"Hexokinase 6 (AHRD V1 ***- Q6Q8A0_TOBAC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0006096,GO:0005975 NbS00005786g0004.1 protein AED:0.24 eAED:0.24 QI:44|0.5|0.2|0.8|0.75|0.8|5|0|166; (*GB) gi|225452057|ref|XP_002283938.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100258368 [Vitis vinifera];; (*SWP) sp|F4IQJ2|ELP5_ARATH (e_value=3e-32) Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1 SV=1;; (*TAIR) AT2G18410.2 (e_value=6e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992203 FORWARD LENGTH=306;; (*ITAG) Solyc02g086100.2.1 (e_value=1e-82) genomic_reference:SL2.40ch02 gene_region:43456529-43462769 transcript_region:SL2.40ch02:43456529..43462769+ functional_description:"Dermal papilla-derived protein 6 homolog (AHRD V1 *-*- DERP6_DANRE); contains Interpro domain(s) IPR019519 Histone acetylation protein 2 "; NbS00005786g0106.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.33|3|0|318 NbS00009118g0004.1 protein AED:0.21 eAED:0.22 QI:421|0.86|0.86|1|0.78|0.78|38|0|1530; (*GB) gi|116047943|gb|ABJ53197.1| (e_value=0.0) myosin XI-2 [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G43900.3 (e_value=0.0) | Symbols: MYA2 | myosin 2 | chr5:17657241-17667413 REVERSE LENGTH=1565;; (*ITAG) Solyc09g064200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56914491-56934722 transcript_region:SL2.40ch09:56914491..56934722- go_terms:GO:0042803 functional_description:"Myosin XI-2 (AHRD V1 ***- B0CN59_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00026924g0004.1 protein AED:0.10 eAED:0.10 QI:406|0.70|0.76|0.92|0.91|0.88|25|517|1864; (*GB) gi|224069798|ref|XP_002303042.1| (e_value=0.0) hypothetical protein POPTRDRAFT_756271 [Populus trichocarpa];; (*SWP) sp|Q8CHI8|EP400_MOUSE (e_value=7e-12) E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=3;; (*TAIR) AT3G24870.1 (e_value=0.0) | Symbols: | Helicase/SANT-associated, DNA binding protein | chr3:9075237-9084278 REVERSE LENGTH=1907;; (*ITAG) Solyc09g060080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53116687-53137092 transcript_region:SL2.40ch09:53116687..53137092+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00041586g0011.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0.5|0.33|3|0|238; (*GB) gi|359482322|ref|XP_002277233.2| (e_value=1e-72) PREDICTED: uncharacterized protein LOC100249368 [Vitis vinifera];; (*TAIR) AT3G52910.1 (e_value=2e-50) | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 | chr3:19616177-19618268 REVERSE LENGTH=380;; (*ITAG) Solyc09g009200.1.1 (e_value=1e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2558721-2562818 transcript_region:SL2.40ch09:2558721..2562818- go_terms:GO:0005634 functional_description:"Growth-regulating factor 10 (AHRD V1 *--- B9VHC3_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00041586g0010.1 protein AED:0.41 eAED:0.41 QI:2|0.84|0.85|0.92|0.61|0.64|14|0|522; (*GB) gi|2764396|emb|CAA03846.1| (e_value=0.0) starch branching enzyme II, SBE-II [Solanum tuberosum];; (*SWP) sp|Q9LZS3|GLGB2_ARATH (e_value=0.0) 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1;; (*TAIR) AT5G03650.1 (e_value=0.0) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805;; (*ITAG) Solyc09g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2539818-2558047 transcript_region:SL2.40ch09:2539818..2558047+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme II (AHRD V1 **** P93691_WHEAT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00024261g0009.1 protein AED:0.19 eAED:0.19 QI:341|1|0.85|1|0.84|0.78|14|0|875; (*GB) gi|359485142|ref|XP_002279792.2| (e_value=0.0) PREDICTED: protein MEI2-like 2-like [Vitis vinifera];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc10g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00024261g0008.1 protein AED:0.23 eAED:0.23 QI:114|0.83|0.57|1|0.66|0.85|7|0|313; (*GB) gi|359485140|ref|XP_002279775.2| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Vitis vinifera];; (*SWP) sp|Q9XGA1|KPRS4_SPIOL (e_value=0.0) Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1;; (*TAIR) AT2G42910.1 (e_value=0.0) | Symbols: | Phosphoribosyltransferase family protein | chr2:17856396-17858394 FORWARD LENGTH=337;; (*ITAG) Solyc07g056330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61527121-61530768 transcript_region:SL2.40ch07:61527121..61530768+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- D7LJE3_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00000813g0003.1 protein AED:0.18 eAED:0.18 QI:168|1|0.85|1|1|1|7|300|507; (*GB) gi|350534958|ref|NP_001234424.1| (e_value=0.0) uncharacterized protein LOC543899 [Solanum lycopersicum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=9e-100) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT4G25640.2 (e_value=0.0) | Symbols: DTX35 | detoxifying efflux carrier 35 | chr4:13076576-13078965 REVERSE LENGTH=514;; (*ITAG) Solyc03g025200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7048049-7053945 transcript_region:SL2.40ch03:7048049..7053945+ go_terms:GO:0005215 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_PHOLL); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00011600g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|0.66|0.5|0.66|3|124|109 NbS00002260g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0.33|0.25|4|147|383; (*GB) gi|255538718|ref|XP_002510424.1| (e_value=2e-142) Jasmonate O-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9SBK6|JMT_BRARP (e_value=5e-120) Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1;; (*TAIR) AT1G19640.1 (e_value=1e-120) | Symbols: JMT | jasmonic acid carboxyl methyltransferase | chr1:6789166-6791708 REVERSE LENGTH=389;; (*ITAG) Solyc04g080660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62360960-62365239 transcript_region:SL2.40ch04:62360960..62365239- go_terms:GO:0030795 functional_description:"Carboxyl methyltransferase 4 (AHRD V1 **** B0ZB58_HUMLU); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0030795 NbS00008661g0001.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225442609|ref|XP_002284468.1| (e_value=1e-38) PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P16180|RR17_ARATH (e_value=3e-33) 30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=2 SV=1;; (*TAIR) AT1G79850.1 (e_value=2e-34) | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S17 | chr1:30041473-30041922 REVERSE LENGTH=149;; (*ITAG) Solyc03g120630.2.1 (e_value=2e-52) genomic_reference:SL2.40ch03 gene_region:63028075-63029073 transcript_region:SL2.40ch03:63028075..63029073- go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 *-*- D8JV24_HYPDA); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00033514g0004.1 protein AED:0.26 eAED:0.29 QI:212|0|0.5|1|1|1|2|0|248; (*GB) gi|356556997|ref|XP_003546805.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100793632 [Glycine max];; (*TAIR) AT1G79160.1 (e_value=3e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779862-29780668 REVERSE LENGTH=239;; (*ITAG) Solyc07g066570.2.1 (e_value=8e-72) genomic_reference:SL2.40ch07 gene_region:65187912-65188759 transcript_region:SL2.40ch07:65187912..65188759- functional_description:">F3O9.30 (AHRD V1 ***- Q9SA48_ARATH)"; NbS00050269g0001.1 protein AED:0.03 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|125987960|dbj|BAF47120.1| (e_value=1e-93) translationally controlled tumor protein like protein [Nicotiana tabacum];; (*SWP) sp|Q9XHL7|TCTP_TOBAC (e_value=6e-92) Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1;; (*TAIR) AT3G16640.1 (e_value=2e-70) | Symbols: TCTP | translationally controlled tumor protein | chr3:5669709-5670729 REVERSE LENGTH=168;; (*ITAG) Solyc01g099780.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:81681050-81683267 transcript_region:SL2.40ch01:81681050..81683267+ go_terms:GO:0005515 functional_description:"Translationally-controlled tumor protein homolog (AHRD V1 ***- B5XDL0_SALSA); contains Interpro domain(s) IPR001983 Translationally controlled tumour-associated TCTP "; GO:0005515 NbS00050269g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|0.8|1|1|5|0|513; (*GB) gi|224133752|ref|XP_002321652.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O15736|TIPD_DICDI (e_value=4e-74) Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1;; (*TAIR) AT5G50230.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20448632-20450855 REVERSE LENGTH=509;; (*ITAG) Solyc03g111740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56438480-56443877 transcript_region:SL2.40ch03:56438480..56443877- go_terms:GO:0005515 functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AXY5_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00026885g0002.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.33|1|1|3|0|168; (*GB) gi|255571259|ref|XP_002526579.1| (e_value=1e-51) hypothetical protein RCOM_1603380 [Ricinus communis];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=5e-30) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT1G65910.1 (e_value=5e-49) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g036430.1.1 (e_value=2e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21468369-21472137 transcript_region:SL2.40ch02:21468369..21472137+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00026885g0004.1 protein AED:0.32 eAED:0.44 QI:0|0|0|1|1|1|2|0|60 NbS00007531g0009.1 protein AED:0.12 eAED:0.12 QI:938|1|1|1|0.73|0.87|16|325|377; (*GB) gi|356565093|ref|XP_003550779.1| (e_value=0.0) PREDICTED: CAS1 domain-containing protein 1-like [Glycine max];; (*SWP) sp|Q96PB1|CASD1_HUMAN (e_value=4e-53) CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1;; (*TAIR) AT3G06550.3 (e_value=0.0) | Symbols: | O-acetyltransferase family protein | chr3:2039317-2042664 REVERSE LENGTH=544;; (*ITAG) Solyc01g058270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:58780420-58787167 transcript_region:SL2.40ch01:58780420..58787167+ go_terms:GO:0016413 functional_description:"CAS1 domain containing 1 (AHRD V1 **-- B0W8N6_CULQU); contains Interpro domain(s) IPR012419 Cas1p-like "; GO:0016413 NbS00021654g0001.1 protein AED:0.04 eAED:0.04 QI:261|1|0.5|1|0|0|2|0|561; (*GB) gi|225447488|ref|XP_002264832.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266500 [Vitis vinifera];; (*TAIR) AT4G12700.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04280.1); Has 136 Blast hits to 136 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr4:7482643-7484328 REVERSE LENGTH=561;; (*ITAG) Solyc07g045210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55647405-55649153 transcript_region:SL2.40ch07:55647405..55649153- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00021654g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|321149997|gb|ADW66146.1| (e_value=2e-79) RING-H2 zinc finger protein [Solanum nigrum];; (*SWP) sp|Q9ZU51|RHA2B_ARATH (e_value=4e-14) Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2;; (*TAIR) AT2G04240.2 (e_value=7e-45) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162;; (*ITAG) Solyc07g045190.1.1 (e_value=9e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55644301-55644666 transcript_region:SL2.40ch07:55644301..55644666+ go_terms:GO:0005515 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q30D22_PONTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00028625g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|1|1|2|728|107; (*GB) gi|296083068|emb|CBI22472.3| (e_value=3e-47) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UBN7|HDAC6_HUMAN (e_value=5e-19) Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2;; (*TAIR) AT2G14830.2 (e_value=7e-42) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6363893 FORWARD LENGTH=146;; (*ITAG) Solyc10g049650.1.1 (e_value=3e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41800373-41803147 transcript_region:SL2.40ch10:41800373..41803147- go_terms:GO:0005634,GO:0008270 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *--- Q1RL25_CIOIN); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0005634,GO:0008270 NbS00001717g0003.1 protein AED:0.06 eAED:0.06 QI:47|1|1|1|0.4|0.16|6|217|568; (*GB) gi|225435092|ref|XP_002284473.1| (e_value=0.0) PREDICTED: laccase-17 [Vitis vinifera];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5237938-5240382 transcript_region:SL2.40ch09:5237938..5240382+ go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- O24042_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00050537g0002.1 protein AED:0.56 eAED:0.91 QI:0|0|0|0.33|1|1|3|0|225 NbS00002821g0002.1 protein AED:0.09 eAED:0.09 QI:58|0.75|0.77|1|0.75|0.66|9|571|442; (*GB) gi|5734587|emb|CAB52797.1| (e_value=0.0) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=3e-64) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT4G28220.1 (e_value=0.0) | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13993078-13995651 FORWARD LENGTH=571;; (*ITAG) Solyc10g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2704288-2710170 transcript_region:SL2.40ch10:2704288..2710170+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00002821g0009.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|0|0|2|0|63 NbS00002821g0115.1 protein AED:0.31 eAED:0.31 QI:93|0.2|0.16|0.83|0.6|0.5|6|0|265 NbS00002821g0114.1 protein AED:0.09 eAED:0.09 QI:196|1|0.92|1|0.58|0.76|13|0|491 NbS00002821g0104.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|254 NbS00008758g0012.1 protein AED:0.13 eAED:0.13 QI:120|0.75|0.69|0.92|0.66|0.61|13|0|562; (*GB) gi|359491497|ref|XP_002278082.2| (e_value=0.0) PREDICTED: exonuclease 1-like [Vitis vinifera];; (*SWP) sp|Q8L6Z7|EXO1_ARATH (e_value=4e-83) Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2;; (*TAIR) AT1G18090.1 (e_value=3e-176) | Symbols: | 5'-3' exonuclease family protein | chr1:6224539-6227715 FORWARD LENGTH=577;; (*ITAG) Solyc03g119070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61833430-61837082 transcript_region:SL2.40ch03:61833430..61837082+ go_terms:GO:0008409,GO:0003690 functional_description:"Flap structure-specific endonuclease (AHRD V1 *--- FEN_PYRAE); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0008409,GO:0003690 NbS00008758g0008.1 protein AED:0.16 eAED:0.16 QI:45|0.88|1|1|0.88|0.8|10|395|471; (*GB) gi|350538893|ref|NP_001234620.1| (e_value=0.0) beta-mannosidase enzyme precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV33|BGL44_ARATH (e_value=0.0) Beta-glucosidase 44 OS=Arabidopsis thaliana GN=BGLU44 PE=2 SV=1;; (*TAIR) AT3G18080.1 (e_value=0.0) | Symbols: BGLU44 | B-S glucosidase 44 | chr3:6191586-6194124 FORWARD LENGTH=512;; (*ITAG) Solyc03g119080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61837300-61840225 transcript_region:SL2.40ch03:61837300..61840225- go_terms:GO:0080083 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0080083 NbS00008758g0007.1 protein AED:0.20 eAED:0.20 QI:45|0.77|0.8|1|1|1|10|345|507; (*GB) gi|350538893|ref|NP_001234620.1| (e_value=0.0) beta-mannosidase enzyme precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV33|BGL44_ARATH (e_value=0.0) Beta-glucosidase 44 OS=Arabidopsis thaliana GN=BGLU44 PE=2 SV=1;; (*TAIR) AT3G18080.1 (e_value=0.0) | Symbols: BGLU44 | B-S glucosidase 44 | chr3:6191586-6194124 FORWARD LENGTH=512;; (*ITAG) Solyc03g119080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61837300-61840225 transcript_region:SL2.40ch03:61837300..61840225- go_terms:GO:0080083 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0080083 NbS00000469g0017.1 protein AED:0.02 eAED:0.02 QI:542|1|1|1|1|1|5|489|355; (*GB) gi|297742528|emb|CBI34677.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G63470.1 (e_value=6e-53) | Symbols: | AT hook motif DNA-binding family protein | chr1:23536831-23538863 REVERSE LENGTH=378;; (*ITAG) Solyc08g080960.2.1 (e_value=3e-125) genomic_reference:SL2.40ch08 gene_region:61254917-61259864 transcript_region:SL2.40ch08:61254917..61259864- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00000469g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|224067882|ref|XP_002302580.1| (e_value=3e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6H5X0|RIP2_ORYSJ (e_value=5e-32) Putative ripening-related protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0637000 PE=3 SV=1;; (*ITAG) Solyc08g080950.1.1 (e_value=1e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61253941-61254360 transcript_region:SL2.40ch08:61253941..61254360- functional_description:"Ripening-related protein 3 (AHRD V1 **-- RIP3_ORYSJ); contains Interpro domain(s) IPR009009 Barwin-related endoglucanase "; NbS00000469g0022.1 protein AED:0.12 eAED:0.12 QI:103|0.8|0.83|1|0.8|0.66|6|299|231; (*GB) gi|20138338|sp|Q9FXS3.1|GPX4_TOBAC (e_value=8e-117) RecName: Full=Probable phospholipid hydroperoxide glutathione peroxidase; Short=PHGPx; AltName: Full=Nt-SubC08;; (*SWP) sp|Q9FXS3|GPX4_TOBAC (e_value=2e-118) Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G11600.1 (e_value=2e-96) | Symbols: ATGPX6, PHGPX, LSC803, GPX6 | glutathione peroxidase 6 | chr4:7010021-7011330 REVERSE LENGTH=232;; (*ITAG) Solyc08g080940.2.1 (e_value=2e-137) genomic_reference:SL2.40ch08 gene_region:61250698-61253731 transcript_region:SL2.40ch08:61250698..61253731+ go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- Q4VY91_CAPCH); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00000469g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|224058539|ref|XP_002299537.1| (e_value=7e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=2e-20) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G63450.1 (e_value=7e-63) | Symbols: RHS8 | root hair specific 8 | chr1:23532523-23534517 FORWARD LENGTH=664;; (*ITAG) Solyc08g080930.1.1 (e_value=4e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61247589-61249547 transcript_region:SL2.40ch08:61247589..61249547+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 *--- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00000469g0024.1 protein AED:0.31 eAED:0.37 QI:0|0|0|0.75|0|0.25|4|0|207; (*GB) gi|297742531|emb|CBI34680.3| (e_value=2e-90) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=8e-51) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT1G63450.1 (e_value=3e-82) | Symbols: RHS8 | root hair specific 8 | chr1:23532523-23534517 FORWARD LENGTH=664;; (*ITAG) Solyc08g080930.1.1 (e_value=2e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61247589-61249547 transcript_region:SL2.40ch08:61247589..61249547+ go_terms:GO:0016757 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 *--- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00000469g0020.1 protein AED:0.43 eAED:0.44 QI:0|0.33|0|1|0.33|0.5|4|0|290; (*GB) gi|255570655|ref|XP_002526282.1| (e_value=8e-122) phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis];; (*SWP) sp|Q9SWE5|HAL3A_ARATH (e_value=7e-116) Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1;; (*TAIR) AT3G18030.1 (e_value=5e-117) | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like protein A | chr3:6167883-6168629 REVERSE LENGTH=209;; (*ITAG) Solyc08g080920.2.1 (e_value=3e-134) genomic_reference:SL2.40ch08 gene_region:61245090-61246265 transcript_region:SL2.40ch08:61245090..61246265+ go_terms:GO:0004633 functional_description:"Phosphopantothenoylcysteine decarboxylase (AHRD V1 **-* B4FCR1_MAIZE); contains Interpro domain(s) IPR003382 Flavoprotein "; GO:0004633 NbS00004880g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|151; (*GB) gi|225446345|ref|XP_002272406.1| (e_value=2e-31) PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=4e-21) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT5G56170.1 (e_value=8e-32) | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | chr5:22736072-22737108 FORWARD LENGTH=168;; (*ITAG) Solyc10g008360.2.1 (e_value=4e-39) genomic_reference:SL2.40ch10 gene_region:2487795-2489641 transcript_region:SL2.40ch10:2487795..2489641- functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00013364g0008.1 protein AED:0.57 eAED:0.66 QI:0|1|0|1|1|0.5|2|0|136; (*GB) gi|255544510|ref|XP_002513316.1| (e_value=2e-57) hypothetical protein RCOM_1573710 [Ricinus communis];; (*TAIR) AT3G20270.3 (e_value=7e-46) | Symbols: | lipid-binding serum glycoprotein family protein | chr3:7067779-7070866 FORWARD LENGTH=722;; (*ITAG) Solyc03g123970.1.1 (e_value=9e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64716187-64717511 transcript_region:SL2.40ch03:64716187..64717511+ functional_description:"Lipid-binding serum glycoprotein family protein (AHRD V1 *-*- D7LAX8_ARALY)"; NbS00060971g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|0|0|3|0|248; (*GB) gi|297744162|emb|CBI37132.3| (e_value=3e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04017|NAC98_ARATH (e_value=2e-36) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT4G28530.2 (e_value=6e-61) | Symbols: anac074, NAC074 | NAC domain containing protein 74 | chr4:14090725-14094603 REVERSE LENGTH=315;; (*ITAG) Solyc09g025310.2.1 (e_value=9e-80) genomic_reference:SL2.40ch09 gene_region:19323700-19328080 transcript_region:SL2.40ch09:19323700..19328080- go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRP6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00055366g0003.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|68 NbS00001531g0006.1 protein AED:0.22 eAED:0.22 QI:155|1|1|1|0.25|0.2|5|172|436; (*GB) gi|359484849|ref|XP_002275774.2| (e_value=0.0) PREDICTED: APO protein 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8W4A5|APO2_ARATH (e_value=0.0) APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1;; (*TAIR) AT5G57930.2 (e_value=0.0) | Symbols: APO2 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:23454690-23456354 FORWARD LENGTH=443;; (*ITAG) Solyc07g005570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:451950-457148 transcript_region:SL2.40ch07:451950..457148- functional_description:"APO protein 2, chloroplastic (AHRD V1 ***- APO2_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00016654g0014.1 protein AED:0.12 eAED:0.12 QI:109|1|1|1|1|1|4|309|318; (*GB) gi|356572746|ref|XP_003554527.1| (e_value=0.0) PREDICTED: epoxide hydrolase 2-like [Glycine max];; (*SWP) sp|P34913|HYES_HUMAN (e_value=3e-55) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT4G02340.1 (e_value=7e-175) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc06g009170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3108490-3113302 transcript_region:SL2.40ch06:3108490..3113302+ go_terms:GO:0004301 functional_description:"Epoxide hydrolase 1 (AHRD V1 **** D8L7V7_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00016654g0003.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|4|0|278; (*ITAG) Solyc00g005870.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3435133-3436360 transcript_region:SL2.40ch00:3435133..3436360- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00016654g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|225437416|ref|XP_002271045.1| (e_value=2e-48) PREDICTED: uncharacterized protein LOC100265898 [Vitis vinifera];; (*TAIR) AT4G02370.1 (e_value=1e-49) | Symbols: | Protein of unknown function, DUF538 | chr4:1042458-1042961 FORWARD LENGTH=167;; (*ITAG) Solyc06g009150.1.1 (e_value=1e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3095005-3095484 transcript_region:SL2.40ch06:3095005..3095484- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00016654g0019.1 protein AED:0.27 eAED:0.30 QI:0|0.33|0|1|0.33|0.5|4|0|566; (*GB) gi|224128446|ref|XP_002320332.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXK7|PME41_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2;; (*TAIR) AT4G02330.1 (e_value=0.0) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573;; (*ITAG) Solyc06g009180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3114053-3119562 transcript_region:SL2.40ch06:3114053..3119562- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00016654g0012.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|98; (*ITAG) Solyc00g005860.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3434263-3434662 transcript_region:SL2.40ch00:3434263..3434662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049933g0006.1 protein AED:0.43 eAED:0.49 QI:43|0.73|0.62|1|0.73|0.81|16|0|503; (*GB) gi|359484562|ref|XP_002284044.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=8e-169) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28880.1 (e_value=0.0) | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251351-14254048 FORWARD LENGTH=415;; (*ITAG) Solyc12g007280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1688953-1693741 transcript_region:SL2.40ch12:1688953..1693741+ go_terms:GO:0006468 functional_description:"Casein kinase 1-like protein 4 (AHRD V1 ***- Q8LPI7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00049933g0007.1 protein AED:0.66 eAED:0.80 QI:53|0|0.5|1|0|0|2|0|63 NbS00058430g0005.1 protein AED:0.14 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|383|194; (*GB) gi|242043990|ref|XP_002459866.1| (e_value=3e-91) hypothetical protein SORBIDRAFT_02g012590 [Sorghum bicolor];; (*SWP) sp|Q38867|CP19C_ARATH (e_value=3e-87) Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=2 SV=2;; (*TAIR) AT3G56070.2 (e_value=2e-88) | Symbols: ROC2 | rotamase cyclophilin 2 | chr3:20806987-20807517 REVERSE LENGTH=176;; (*ITAG) Solyc11g006070.1.1 (e_value=6e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:861867-862328 transcript_region:SL2.40ch11:861867..862328- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B5LWR0_ZIZJJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00058430g0004.1 protein AED:0.28 eAED:0.28 QI:100|1|0.8|1|0.75|1|5|0|389; (*GB) gi|326367383|gb|ADZ55301.1| (e_value=3e-172) hypothetical protein MA17P03.8 [Coffea arabica];; (*TAIR) AT3G04560.1 (e_value=1e-146) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). | chr3:1227506-1229338 REVERSE LENGTH=417;; (*ITAG) Solyc11g006080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:864350-870452 transcript_region:SL2.40ch11:864350..870452- functional_description:"Unknown Protein (AHRD V1)"; NbS00030602g0010.1 protein AED:0.13 eAED:0.13 QI:60|0.5|0.33|1|1|1|3|0|266; (*GB) gi|94962424|gb|ABF48527.1| (e_value=2e-133) cell wall peroxidase [Capsicum annuum];; (*SWP) sp|Q02200|PERX_NICSY (e_value=1e-79) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=1e-55) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=6e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00030602g0015.1 protein AED:0.16 eAED:0.16 QI:112|0.5|0.4|1|0.5|0.4|5|0|288; (*GB) gi|94962424|gb|ABF48527.1| (e_value=9e-160) cell wall peroxidase [Capsicum annuum];; (*SWP) sp|Q02200|PERX_NICSY (e_value=4e-148) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=6e-101) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00030602g0003.1 protein AED:0.00 eAED:0.00 QI:426|-1|0|1|-1|1|1|0|398; (*GB) gi|255554202|ref|XP_002518141.1| (e_value=1e-68) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=1e-33) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50150.1 (e_value=1e-50) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18595809-18597551 REVERSE LENGTH=509;; (*ITAG) Solyc01g057260.2.1 (e_value=4e-112) genomic_reference:SL2.40ch01 gene_region:53150800-53153577 transcript_region:SL2.40ch01:53150800..53153577+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00030602g0011.1 protein AED:0.31 eAED:0.31 QI:95|0.83|0.84|1|0.5|0.69|13|420|304; (*GB) gi|224059266|ref|XP_002299797.1| (e_value=3e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|B1HV79|PSUG_LYSSC (e_value=2e-78) Pseudouridine-5'-phosphate glycosidase OS=Lysinibacillus sphaericus (strain C3-41) GN=psuG PE=3 SV=1;; (*TAIR) AT1G50510.1 (e_value=7e-135) | Symbols: | indigoidine synthase A family protein | chr1:18716578-18719060 FORWARD LENGTH=330;; (*ITAG) Solyc11g033260.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:22911369-22918625 transcript_region:SL2.40ch11:22911369..22918625- functional_description:"Pseudouridine-5&apos-phosphate glycosidase (AHRD V1 ***- A4SJG3_AERS4); contains Interpro domain(s) IPR007342 Indigoidine synthase A like protein "; NbS00006266g0008.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|0.66|0|0|3|0|143; (*GB) gi|269974844|gb|ACZ55219.1| (e_value=1e-81) S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Nicotiana alata];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=9e-46) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT1G19640.1 (e_value=1e-28) | Symbols: JMT | jasmonic acid carboxyl methyltransferase | chr1:6789166-6791708 REVERSE LENGTH=389;; (*ITAG) Solyc09g091550.2.1 (e_value=5e-62) genomic_reference:SL2.40ch09 gene_region:66150433-66153022 transcript_region:SL2.40ch09:66150433..66153022+ go_terms:GO:0008757 functional_description:"Salicylic acid carboxyl methyltransferase (AHRD V1 **** C3VIX6_9ASTR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00006266g0007.1 protein AED:0.48 eAED:0.57 QI:0|0|0|0.66|1|1|3|0|116; (*GB) gi|269974850|gb|ACZ55222.1| (e_value=2e-44) S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Nicotiana sylvestris];; (*ITAG) Solyc09g091540.1.1 (e_value=3e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66141921-66144017 transcript_region:SL2.40ch09:66141921..66144017+ go_terms:GO:0008757 functional_description:"Salicylic acid carboxyl methyltransferase (AHRD V1 **** C3VIX6_9ASTR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00006266g0112.1 protein AED:0.00 eAED:0.00 QI:594|1|1|1|1|1|2|340|142 NbS00006266g0111.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0|0.5|0.66|0.5|4|0|238 NbS00006266g0104.1 protein AED:0.22 eAED:0.22 QI:1198|0.78|0.7|1|0.89|0.8|20|447|513 NbS00007090g0012.1 protein AED:0.07 eAED:0.07 QI:136|1|1|1|0.66|0.5|4|147|280; (*GB) gi|83778375|gb|ABC47128.1| (e_value=7e-146) beta expansin 2 precursor [Solanum tuberosum];; (*SWP) sp|Q7XT40|EXB15_ORYSJ (e_value=2e-83) Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2;; (*TAIR) AT1G65680.1 (e_value=1e-83) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273;; (*ITAG) Solyc03g093390.2.1 (e_value=1e-143) genomic_reference:SL2.40ch03 gene_region:48101735-48103600 transcript_region:SL2.40ch03:48101735..48103600- go_terms:GO:0005576 functional_description:"Expansin protein (AHRD V1 ***- Q14F61_WHEAT); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00007090g0013.1 protein AED:0.05 eAED:0.09 QI:27|0.71|0.25|1|0.71|0.5|8|0|827; (*GB) gi|147834284|emb|CAN69656.1| (e_value=5e-103) hypothetical protein VITISV_013005 [Vitis vinifera];; (*SWP) sp|Q9FGN8|DYAD_ARATH (e_value=2e-91) Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2;; (*TAIR) AT5G51330.1 (e_value=1e-92) | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858752-20861680 REVERSE LENGTH=639;; (*ITAG) Solyc03g093370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:48086463-48090464 transcript_region:SL2.40ch03:48086463..48090464- functional_description:"Protein DYAD (AHRD V1 ***- DYAD_ARATH)"; NbS00007090g0001.1 protein AED:0.28 eAED:0.28 QI:538|0.87|0.77|1|0.62|0.55|9|0|230; (*GB) gi|225443041|ref|XP_002268950.1| (e_value=2e-109) PREDICTED: 8-amino-7-oxononanoate synthase [Vitis vinifera];; (*SWP) sp|A3DBD5|BIOF_CLOTH (e_value=1e-37) Putative 8-amino-7-oxononanoate synthase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=bioF PE=3 SV=1;; (*TAIR) AT5G04620.1 (e_value=2e-112) | Symbols: ATBIOF, BIOF | biotin F | chr5:1328004-1329934 FORWARD LENGTH=343;; (*ITAG) Solyc06g034150.2.1 (e_value=1e-128) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00015343g0001.1 protein AED:0.05 eAED:0.05 QI:1219|1|0.88|1|0.87|0.77|9|86|721; (*GB) gi|356542909|ref|XP_003539907.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 53-like [Glycine max];; (*SWP) sp|Q10M00|C3H22_ORYSJ (e_value=3e-162) Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2;; (*TAIR) AT3G51950.2 (e_value=7e-92) | Symbols: | Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:19278244-19280407 REVERSE LENGTH=540;; (*ITAG) Solyc01g088100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74721207-74725442 transcript_region:SL2.40ch01:74721207..74725442+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 22 (AHRD V1 ***- C3H22_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00018950g0007.1 protein AED:0.17 eAED:0.18 QI:0|1|0.5|1|0.66|0.75|4|376|405; (*GB) gi|225431984|ref|XP_002273100.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 42 [Vitis vinifera];; (*SWP) sp|Q0V7V2|P2C42_ARATH (e_value=0.0) Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1;; (*TAIR) AT3G17090.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:5826984-5829327 FORWARD LENGTH=384;; (*ITAG) Solyc06g065920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37702882-37707679 transcript_region:SL2.40ch06:37702882..37707679- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L6A8_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00018950g0008.1 protein AED:0.29 eAED:0.49 QI:0|0|0|1|0.5|0.66|3|0|322; (*GB) gi|255548830|ref|XP_002515471.1| (e_value=1e-135) heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis];; (*TAIR) AT2G25290.3 (e_value=3e-121) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc06g065910.2.1 (e_value=1e-168) genomic_reference:SL2.40ch06 gene_region:37697428-37699660 transcript_region:SL2.40ch06:37697428..37699660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT4_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00018950g0009.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|3|0|279; (*GB) gi|307136298|gb|ADN34122.1| (e_value=6e-78) heat shock protein 70 [Cucumis melo subsp. melo];; (*TAIR) AT2G25290.3 (e_value=8e-68) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc06g065910.2.1 (e_value=2e-124) genomic_reference:SL2.40ch06 gene_region:37697428-37699660 transcript_region:SL2.40ch06:37697428..37699660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT4_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00023919g0001.1 protein AED:0.26 eAED:0.31 QI:0|0.16|0.28|1|1|1|7|662|795; (*GB) gi|224080432|ref|XP_002306134.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=8e-19) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=6e-20) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062240.1.1 (e_value=5e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46229703-46231982 transcript_region:SL2.40ch11:46229703..46231982+ functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; NbS00023919g0007.1 protein AED:0.59 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|295; (*ITAG) Solyc11g062240.1.1 (e_value=7e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46229703-46231982 transcript_region:SL2.40ch11:46229703..46231982+ functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; NbC25892755g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|224065198|ref|XP_002301712.1| (e_value=3e-75) histone 2 [Populus trichocarpa];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-76) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT3G45980.1 (e_value=2e-76) | Symbols: H2B, HTB9 | Histone superfamily protein | chr3:16897492-16897944 REVERSE LENGTH=150;; (*ITAG) Solyc06g005390.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:401311-401754 transcript_region:SL2.40ch06:401311..401754+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- D7LK79_ARALY); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00010183g0008.1 protein AED:0.04 eAED:0.06 QI:0|0.5|0.66|1|0.5|0.66|3|574|97; (*ITAG) Solyc01g080590.2.1 (e_value=3e-17) genomic_reference:SL2.40ch01 gene_region:72343989-72345930 transcript_region:SL2.40ch01:72343989..72345930- functional_description:"Unknown Protein (AHRD V1)"; NbS00010183g0009.1 protein AED:0.08 eAED:0.08 QI:390|0.87|1|1|0.87|0.77|9|48|434; (*GB) gi|225436851|ref|XP_002271734.1| (e_value=0.0) PREDICTED: LEC14B homolog [Vitis vinifera];; (*SWP) sp|O24467|LE14B_PRUAR (e_value=0.0) LEC14B homolog OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT4G03020.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493;; (*ITAG) Solyc01g080690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72441864-72448982 transcript_region:SL2.40ch01:72441864..72448982+ go_terms:GO:0008134 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 *--* TAF5_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0008134 NbS00010183g0010.1 protein AED:0.17 eAED:0.18 QI:0|0.91|0.92|1|1|1|13|308|387; (*GB) gi|297736937|emb|CBI26138.3| (e_value=1e-174) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LBI9|EDL16_ARATH (e_value=4e-149) Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2;; (*TAIR) AT5G18840.1 (e_value=3e-150) | Symbols: | Major facilitator superfamily protein | chr5:6282954-6286399 FORWARD LENGTH=482;; (*ITAG) Solyc01g080680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72437121-72440809 transcript_region:SL2.40ch01:72437121..72440809+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00014402g0013.1 protein AED:0.00 eAED:0.00 QI:70|1|1|1|1|1|3|284|303; (*GB) gi|225432004|ref|XP_002279385.1| (e_value=2e-55) PREDICTED: probable WRKY transcription factor 48 [Vitis vinifera];; (*SWP) sp|Q9FGZ4|WRK48_ARATH (e_value=1e-41) Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1;; (*TAIR) AT5G49520.1 (e_value=8e-43) | Symbols: WRKY48, ATWRKY48 | WRKY DNA-binding protein 48 | chr5:20090890-20092867 FORWARD LENGTH=399;; (*ITAG) Solyc05g053380.2.1 (e_value=7e-58) genomic_reference:SL2.40ch05 gene_region:62631053-62633674 transcript_region:SL2.40ch05:62631053..62633674- go_terms:GO:0045449 functional_description:"WRKY transcription factor 31 (AHRD V1 *-*- C9DI20_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00014402g0012.1 protein AED:0.14 eAED:0.15 QI:0|0.83|0.71|1|0.66|0.57|7|513|205; (*GB) gi|225432002|ref|XP_002279358.1| (e_value=1e-94) PREDICTED: probable prefoldin subunit 3 [Vitis vinifera];; (*SWP) sp|P57741|PFD3_ARATH (e_value=3e-92) Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1;; (*TAIR) AT5G49510.2 (e_value=2e-93) | Symbols: PFD3 | prefoldin 3 | chr5:20080729-20082456 FORWARD LENGTH=195;; (*ITAG) Solyc05g053390.2.1 (e_value=3e-105) genomic_reference:SL2.40ch05 gene_region:62636005-62641398 transcript_region:SL2.40ch05:62636005..62641398- go_terms:GO:0015631 functional_description:"Prefoldin subunit 3 (AHRD V1 ***- B6TKE7_MAIZE); contains Interpro domain(s) IPR016655 Prefoldin, subunit 3 "; GO:0015631 NbS00016941g0008.1 protein AED:0.36 eAED:0.37 QI:318|0.77|0.7|0.9|0.55|0.5|10|0|326; (*GB) gi|255582121|ref|XP_002531855.1| (e_value=7e-107) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9VUQ8|DCN1L_DROME (e_value=9e-24) DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=1 SV=2;; (*TAIR) AT3G28970.1 (e_value=3e-86) | Symbols: AAR3 | Domain of unknown function (DUF298) | chr3:10987970-10989782 REVERSE LENGTH=295;; (*ITAG) Solyc02g088010.2.1 (e_value=2e-169) genomic_reference:SL2.40ch02 gene_region:44817260-44822308 transcript_region:SL2.40ch02:44817260..44822308- functional_description:"DCN1-like protein 1 (AHRD V1 *-*- C1BQG1_9MAXI); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; NbS00016941g0002.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|8|0|789; (*GB) gi|57015403|sp|Q43847.3|SSY2_SOLTU (e_value=0.0) RecName: Full=Granule-bound starch synthase 2, chloroplastic/amyloplastic; AltName: Full=Granule-bound starch synthase II; Short=GBSS-II; Short=SS II; Flags: Precursor;; (*SWP) sp|Q43847|SSY2_SOLTU (e_value=0.0) Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3;; (*TAIR) AT3G01180.1 (e_value=0.0) | Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792;; (*ITAG) Solyc02g088000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44808426-44814838 transcript_region:SL2.40ch02:44808426..44814838+ go_terms:GO:0004373,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 **** D5MJP6_9BACT); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0004373,GO:0005515 NbS00016941g0010.1 protein AED:0.23 eAED:0.40 QI:0|0.33|0|1|0|0|4|0|332; (*GB) gi|225452841|ref|XP_002278445.1| (e_value=3e-53) PREDICTED: uncharacterized protein LOC100266209 [Vitis vinifera];; (*TAIR) AT3G01175.1 (e_value=1e-26) | Symbols: | Protein of unknown function (DUF1666) | chr3:59484-60845 FORWARD LENGTH=401;; (*ITAG) Solyc02g087990.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:44800007-44803417 transcript_region:SL2.40ch02:44800007..44803417+ functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; NbS00016941g0011.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|146; (*ITAG) Solyc02g087990.2.1 (e_value=1e-48) genomic_reference:SL2.40ch02 gene_region:44800007-44803417 transcript_region:SL2.40ch02:44800007..44803417+ functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; NbS00051853g0001.1 protein AED:0.20 eAED:0.20 QI:278|0|0.5|1|0|0|2|0|101; (*GB) gi|255551438|ref|XP_002516765.1| (e_value=3e-38) wall-associated kinase, putative [Ricinus communis];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-30) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT5G38210.1 (e_value=1e-32) | Symbols: | Protein kinase family protein | chr5:15261035-15265376 FORWARD LENGTH=686;; (*ITAG) Solyc02g086270.2.1 (e_value=4e-46) genomic_reference:SL2.40ch02 gene_region:43557735-43566755 transcript_region:SL2.40ch02:43557735..43566755- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024960g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0.5|2|0|130; (*ITAG) Solyc08g044310.1.1 (e_value=5e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00008948g0005.1 protein AED:0.13 eAED:0.14 QI:2150|0|0.33|0.66|1|1|3|0|75 NbS00008948g0006.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|1|1|2|0|118; (*GB) gi|224097152|ref|XP_002310854.1| (e_value=5e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94G00|PIN1_MALDO (e_value=2e-69) Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1;; (*TAIR) AT2G18040.1 (e_value=2e-64) | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 | chr2:7842346-7843537 FORWARD LENGTH=119;; (*ITAG) Solyc01g110530.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:88959394-88962414 transcript_region:SL2.40ch01:88959394..88962414- go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase C (AHRD V1 *--* PPIC_ECOLI); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0003755 NbS00013971g0001.1 protein AED:0.01 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|147782355|emb|CAN61307.1| (e_value=3e-36) hypothetical protein VITISV_035681 [Vitis vinifera];; (*SWP) sp|Q5RM09|Y1592_ARATH (e_value=8e-12) B3 domain-containing protein At1g05920 OS=Arabidopsis thaliana GN=At1g05920 PE=2 SV=1;; (*TAIR) AT1G05920.1 (e_value=6e-13) | Symbols: | Domain of unknown function (DUF313) | chr1:1797044-1797991 FORWARD LENGTH=315;; (*ITAG) Solyc08g006130.1.1 (e_value=7e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:864469-865427 transcript_region:SL2.40ch08:864469..865427- functional_description:"B3 domain-containing protein At1g05920 (AHRD V1 *-*- Y1592_ARATH); contains Interpro domain(s) IPR005508 Protein of unknown function DUF313 "; NbS00002573g0003.1 protein AED:0.47 eAED:0.47 QI:218|0|0.5|0.5|0|0.5|2|0|66 NbS00020984g0002.1 protein AED:0.37 eAED:0.53 QI:349|0|0.25|1|1|1|4|0|76 NbS00003345g0010.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|0.5|0|0.5|2|223|122 NbS00003345g0002.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|224117042|ref|XP_002331815.1| (e_value=8e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT2G42610.2 (e_value=1e-75) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc12g014260.1.1 (e_value=9e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5085293-5085910 transcript_region:SL2.40ch12:5085293..5085910- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00003345g0009.1 protein AED:0.17 eAED:0.17 QI:147|1|1|1|0.75|0.6|5|555|139; (*GB) gi|109288140|gb|ABG29113.1| (e_value=2e-94) multiprotein bridging factor 1b [Solanum lycopersicum];; (*SWP) sp|Q9LXT3|MBF1B_ARATH (e_value=3e-81) Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1;; (*TAIR) AT3G58680.1 (e_value=2e-82) | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142;; (*ITAG) Solyc12g014290.1.1 (e_value=4e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5099925-5102018 transcript_region:SL2.40ch12:5099925..5102018+ go_terms:GO:0003713 functional_description:"Multiprotein bridging factor 1b (AHRD V1 ***- Q152U8_SOLLC); contains Interpro domain(s) IPR001387 Helix-turn-helix type 3 "; GO:0003713 NbS00003345g0003.1 protein AED:0.22 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|606; (*GB) gi|350535491|ref|NP_001234709.1| (e_value=0.0) peptide N-glycanase precursor [Solanum lycopersicum];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=0.0) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=0.0) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc10g007330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1729750-1731516 transcript_region:SL2.40ch10:1729750..1731516- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- C0NA72_AJECG)"; NbS00007435g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|369; (*GB) gi|225428558|ref|XP_002281050.1| (e_value=1e-158) PREDICTED: UPF0496 protein At4g34320-like [Vitis vinifera];; (*SWP) sp|Q9SYZ7|U496A_ARATH (e_value=9e-143) UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1 SV=1;; (*TAIR) AT4G34320.1 (e_value=6e-144) | Symbols: | Protein of unknown function (DUF677) | chr4:16422436-16423824 FORWARD LENGTH=374;; (*ITAG) Solyc01g109380.2.1 (e_value=2e-179) genomic_reference:SL2.40ch01 gene_region:88111929-88113295 transcript_region:SL2.40ch01:88111929..88113295- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00007435g0005.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|88; (*ITAG) Solyc07g032700.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00007435g0015.1 protein AED:0.10 eAED:0.12 QI:80|0.71|0.62|0.87|0.57|0.5|8|227|510; (*GB) gi|255556131|ref|XP_002519100.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-107) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=2e-152) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc01g109320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88057676-88060117 transcript_region:SL2.40ch01:88057676..88060117- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00007435g0002.1 protein AED:0.16 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|319; (*GB) gi|357475469|ref|XP_003608020.1| (e_value=2e-42) hypothetical protein MTR_4g086620 [Medicago truncatula];; (*TAIR) AT2G15760.1 (e_value=3e-32) | Symbols: | Protein of unknown function (DUF1645) | chr2:6865807-6866754 REVERSE LENGTH=315;; (*ITAG) Solyc03g112700.1.1 (e_value=6e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57115377-57116369 transcript_region:SL2.40ch03:57115377..57116369- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00007435g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.42|0.25|0.87|0.71|0.62|8|0|416; (*GB) gi|225428709|ref|XP_002281840.1| (e_value=4e-166) PREDICTED: armadillo repeat-containing protein 6 [Vitis vinifera];; (*SWP) sp|Q8BNU0|ARMC6_MOUSE (e_value=2e-19) Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2 SV=1;; (*TAIR) AT4G33945.1 (e_value=2e-133) | Symbols: | ARM repeat superfamily protein | chr4:16268119-16270514 FORWARD LENGTH=464;; (*ITAG) Solyc11g044870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36267509-36275539 transcript_region:SL2.40ch11:36267509..36275539+ go_terms:GO:0005488 functional_description:"Armadillo repeat containing 6 (AHRD V1 ***- Q6DF37_XENTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00041304g0007.1 protein AED:0.01 eAED:0.01 QI:332|1|1|1|0.5|0.33|3|268|176; (*GB) gi|225434726|ref|XP_002279995.1| (e_value=7e-50) PREDICTED: uncharacterized protein LOC100267406 [Vitis vinifera];; (*TAIR) AT3G54040.1 (e_value=2e-36) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc01g099920.2.1 (e_value=1e-73) genomic_reference:SL2.40ch01 gene_region:81799477-81800865 transcript_region:SL2.40ch01:81799477..81800865- functional_description:"Photoassimilate-responsive protein PAR-1b-like protein (AHRD V1 ***- Q9LCZ9_ARATH); contains Interpro domain(s) IPR009489 PAR1 "; NbS00041304g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.75|1|1|1|4|10|173; (*ITAG) Solyc01g099930.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:81802250-81804990 transcript_region:SL2.40ch01:81802250..81804990- functional_description:"Pectinesterase (Fragment) (AHRD V1 *-*- D7U9X3_VITVI)"; NbS00013220g0003.1 protein AED:0.15 eAED:0.15 QI:228|1|0.88|1|1|1|9|0|661; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=0.0) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=0.0) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=0.0) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbC26177011g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|265|270; (*GB) gi|225438213|ref|XP_002265055.1| (e_value=2e-126) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera];; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=3e-22) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT3G49750.1 (e_value=4e-107) | Symbols: AtRLP44, RLP44 | receptor like protein 44 | chr3:18450604-18451428 REVERSE LENGTH=274;; (*ITAG) Solyc02g092040.1.1 (e_value=5e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47827762-47828565 transcript_region:SL2.40ch02:47827762..47828565- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00013590g0012.1 protein AED:0.21 eAED:0.21 QI:296|0.4|0.83|1|0.6|0.66|6|233|193; (*GB) gi|351727491|ref|NP_001235371.1| (e_value=9e-83) uncharacterized protein LOC100499740 [Glycine max];; (*SWP) sp|Q43463|RAB7_SOYBN (e_value=9e-84) Ras-related protein Rab7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G22740.1 (e_value=4e-81) | Symbols: RAB7, ATRABG3B, RAB75, RABG3B | RAB GTPase homolog G3B | chr1:8049247-8050494 FORWARD LENGTH=203;; (*ITAG) Solyc04g051680.2.1 (e_value=2e-111) genomic_reference:SL2.40ch04 gene_region:50130142-50133500 transcript_region:SL2.40ch04:50130142..50133500- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00013590g0004.1 protein AED:0.14 eAED:0.14 QI:134|0.96|0.96|1|0.73|0.66|27|1484|581; (*GB) gi|225438527|ref|XP_002279361.1| (e_value=0.0) PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera];; (*SWP) sp|Q9XIK4|U202A_ARATH (e_value=0.0) UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2;; (*TAIR) AT1G10490.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00032401g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|154; (*ITAG) Solyc02g024010.1.1 (e_value=4e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:15496664-15497113 transcript_region:SL2.40ch02:15496664..15497113+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016645g0001.1 protein AED:0.22 eAED:0.23 QI:134|1|0.66|1|1|1|3|0|275; (*GB) gi|225441987|ref|XP_002271218.1| (e_value=9e-102) PREDICTED: uncharacterized protein LOC100260045 [Vitis vinifera];; (*TAIR) AT1G53860.1 (e_value=3e-35) | Symbols: | Remorin family protein | chr1:20107165-20109458 REVERSE LENGTH=442;; (*ITAG) Solyc03g123590.2.1 (e_value=9e-154) genomic_reference:SL2.40ch03 gene_region:64452687-64455651 transcript_region:SL2.40ch03:64452687..64455651+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KLC3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00016645g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|126; (*GB) gi|297742931|emb|CBI35798.3| (e_value=3e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G53860.1 (e_value=4e-22) | Symbols: | Remorin family protein | chr1:20107165-20109458 REVERSE LENGTH=442;; (*ITAG) Solyc03g123590.2.1 (e_value=3e-71) genomic_reference:SL2.40ch03 gene_region:64452687-64455651 transcript_region:SL2.40ch03:64452687..64455651+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KLC3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00028616g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|365; (*GB) gi|359489228|ref|XP_002269069.2| (e_value=3e-66) PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Vitis vinifera];; (*SWP) sp|Q9LY41|ATL4_ARATH (e_value=8e-54) E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4 PE=1 SV=1;; (*TAIR) AT3G60220.1 (e_value=6e-55) | Symbols: ATL4, TL4 | TOXICOS EN LEVADURA 4 | chr3:22254790-22255794 REVERSE LENGTH=334;; (*ITAG) Solyc01g088630.1.1 (e_value=4e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75146240-75147346 transcript_region:SL2.40ch01:75146240..75147346- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017120g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|239736613|gb|ACS13013.1| (e_value=1e-32) PsbA [Oryza sativa];; (*SWP) sp|A8SE40|PSBA_CERDE (e_value=1e-32) Photosystem Q(B) protein OS=Ceratophyllum demersum GN=psbA PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=1e-33) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=9e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00005490g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|552; (*GB) gi|147804721|emb|CAN62778.1| (e_value=0.0) hypothetical protein VITISV_031212 [Vitis vinifera];; (*SWP) sp|Q5RDY2|TM9S4_PONAB (e_value=7e-116) Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1;; (*TAIR) AT5G35160.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=630;; (*ITAG) Solyc06g065830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37652162-37654282 transcript_region:SL2.40ch06:37652162..37654282- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 ***- B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00020408g0002.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|0|0|3|0|81; (*ITAG) Solyc06g073160.2.1 (e_value=3e-18) genomic_reference:SL2.40ch06 gene_region:41461216-41466739 transcript_region:SL2.40ch06:41461216..41466739- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 *-*- Q9FM45_ARATH)"; NbS00020408g0003.1 protein AED:0.42 eAED:0.62 QI:0|0|0|1|0|0|2|0|64 NbS00028398g0001.1 protein AED:0.03 eAED:0.10 QI:1431|0.66|0.75|1|0|0.25|4|319|52 NbS00024406g0014.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|0|0|2|0|65; (*GB) gi|357488567|ref|XP_003614571.1| (e_value=6e-34) Prefoldin subunit [Medicago truncatula];; (*TAIR) AT1G29990.1 (e_value=4e-35) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=1e-37) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631,GO:0051087 NbS00024406g0017.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|0.5|0.33|3|0|772; (*GB) gi|15418714|gb|AAG31017.1| (e_value=1e-136) tospovirus resistance protein E [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-103) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=7e-60) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=2e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00024406g0008.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.4|1|1|5|0|758; (*GB) gi|15418710|gb|AAG31014.1| (e_value=9e-102) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=1e-82) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=2e-58) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc06g064760.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00024406g0006.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|1|1|3|0|313; (*GB) gi|85068616|gb|ABC69388.1| (e_value=9e-177) CYP92B2v2 [Nicotiana tabacum];; (*SWP) sp|Q9SBQ9|F3PH_PETHY (e_value=6e-48) Flavonoid 3'-monooxygenase OS=Petunia hybrida GN=CYP75B2 PE=2 SV=1;; (*TAIR) AT5G36220.1 (e_value=1e-45) | Symbols: CYP81D1, CYP91A1 | cytochrome p450 81d1 | chr5:14253827-14256015 REVERSE LENGTH=502;; (*ITAG) Solyc11g030730.1.1 (e_value=1e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:19662451-19664018 transcript_region:SL2.40ch11:19662451..19664018- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00024406g0001.1 protein AED:0.27 eAED:0.29 QI:0|1|0.6|1|1|1|5|0|351; (*GB) gi|6692816|dbj|BAA89423.1| (e_value=6e-157) allyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q39173|P2_ARATH (e_value=4e-149) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT5G16990.1 (e_value=3e-150) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343;; (*ITAG) Solyc11g030720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:19656366-19661819 transcript_region:SL2.40ch11:19656366..19661819+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* D6H3R6_STAAU); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00047838g0016.1 protein AED:0.21 eAED:0.21 QI:336|0.9|1|1|1|1|11|212|324; (*GB) gi|157042735|gb|ABV02019.1| (e_value=0.0) 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P69834|ISPD_ARATH (e_value=5e-134) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1;; (*TAIR) AT2G02500.1 (e_value=4e-135) | Symbols: ISPD, ATMEPCT, MCT | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:671054-673124 REVERSE LENGTH=302;; (*ITAG) Solyc01g102820.2.1 (e_value=1e-171) genomic_reference:SL2.40ch01 gene_region:83279474-83284682 transcript_region:SL2.40ch01:83279474..83284682- go_terms:GO:0008299 functional_description:"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (AHRD V1 ***- A9ZN09_HEVBR); contains Interpro domain(s) IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase "; GO:0008299 NbS00047838g0018.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.42|1|0.83|0.71|7|0|780; (*GB) gi|359486198|ref|XP_002268959.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera];; (*SWP) sp|P09122|DPO3X_BACSU (e_value=5e-46) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT2G02480.1 (e_value=0.0) | Symbols: STI | AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218;; (*ITAG) Solyc01g102810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83273087-83279273 transcript_region:SL2.40ch01:83273087..83279273+ go_terms:GO:0009360,GO:0006468,GO:0006260 functional_description:"DNA polymerase III gamma and tau subunit (AHRD V1 *-*- B5IJD5_9CHRO); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0006468,GO:0006260 NbS00047838g0004.1 protein AED:0.46 eAED:0.46 QI:0|0|0.5|1|0|1|2|282|71; (*GB) gi|224129818|ref|XP_002328810.1| (e_value=3e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9R9|NDB3B_ARATH (e_value=7e-28) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=2 SV=1;; (*TAIR) AT1G14450.1 (e_value=5e-29) | Symbols: | NADH dehydrogenase (ubiquinone)s | chr1:4947337-4947558 REVERSE LENGTH=73;; (*ITAG) Solyc01g102830.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:83288462-83289299 transcript_region:SL2.40ch01:83288462..83289299+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047838g0020.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|546; (*GB) gi|359486198|ref|XP_002268959.2| (e_value=7e-126) PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera];; (*TAIR) AT2G02480.1 (e_value=8e-116) | Symbols: STI | AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218;; (*ITAG) Solyc01g102810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83273087-83279273 transcript_region:SL2.40ch01:83273087..83279273+ go_terms:GO:0009360,GO:0006468,GO:0006260 functional_description:"DNA polymerase III gamma and tau subunit (AHRD V1 *-*- B5IJD5_9CHRO); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0006468,GO:0006260 NbS00007835g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|388514861|gb|AFK45492.1| (e_value=1e-21) unknown [Lotus japonicus];; (*ITAG) Solyc06g054470.1.1 (e_value=2e-33) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33725929-33726480 transcript_region:SL2.40ch06:33725929..33726480- functional_description:"Unknown Protein (AHRD V1)"; NbS00007835g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0.71|1|0.66|0.85|7|0|373; (*GB) gi|255575124|ref|XP_002528467.1| (e_value=9e-151) Auxin-induced protein 5NG4, putative [Ricinus communis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=9e-65) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT2G39510.1 (e_value=1e-144) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr2:16491358-16493085 REVERSE LENGTH=374;; (*ITAG) Solyc06g031710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:17498615-17501330 transcript_region:SL2.40ch06:17498615..17501330+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00007018g0006.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.75|0.33|0|4|0|383; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=6e-76) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=3e-71) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=2e-45) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=1e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00007018g0007.1 protein AED:0.14 eAED:0.49 QI:0|0.5|0.66|1|0|0|3|78|109; (*GB) gi|359476259|ref|XP_002279425.2| (e_value=6e-36) PREDICTED: putative methyltransferase NSUN5-like [Vitis vinifera];; (*TAIR) AT5G26180.2 (e_value=6e-28) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:9149253-9152595 FORWARD LENGTH=567;; (*ITAG) Solyc08g062560.2.1 (e_value=8e-43) genomic_reference:SL2.40ch08 gene_region:48597719-48608086 transcript_region:SL2.40ch08:48597719..48608086- go_terms:GO:0005515,GO:0016434 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-** B5YF43_DICT6); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0005515,GO:0016434 NbS00058955g0004.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.25|1|0.33|0.75|4|0|661; (*GB) gi|225444365|ref|XP_002264920.1| (e_value=0.0) PREDICTED: COBRA-like protein 10 [Vitis vinifera];; (*SWP) sp|Q9LJU0|CBL10_ARATH (e_value=0.0) COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1;; (*TAIR) AT3G20580.1 (e_value=0.0) | Symbols: COBL10 | COBRA-like protein 10 precursor | chr3:7188063-7190416 REVERSE LENGTH=672;; (*ITAG) Solyc10g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1056386-1059210 transcript_region:SL2.40ch10:1056386..1059210- functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00011279g0010.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|1|1|6|0|279; (*GB) gi|296086628|emb|CBI32263.3| (e_value=8e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=1e-95) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT5G13170.1 (e_value=1e-91) | Symbols: SAG29, SWEET15, AtSWEET15 | senescence-associated gene 29 | chr5:4181331-4183171 REVERSE LENGTH=292;; (*ITAG) Solyc09g074530.2.1 (e_value=4e-142) genomic_reference:SL2.40ch09 gene_region:61857563-61859113 transcript_region:SL2.40ch09:61857563..61859113+ go_terms:GO:0016021 functional_description:"MTN3 (AHRD V1 **-- B6T9U6_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00011279g0008.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|581; (*GB) gi|254028670|gb|ACT53268.1| (e_value=0.0) transport inhibitor response 1 [Nicotiana tabacum];; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=0.0) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2;; (*TAIR) AT3G62980.1 (e_value=0.0) | Symbols: TIR1 | F-box/RNI-like superfamily protein | chr3:23273479-23276181 REVERSE LENGTH=594;; (*ITAG) Solyc09g074520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00011279g0013.1 protein AED:0.22 eAED:0.38 QI:0|1|0|1|1|1|2|0|210; (*GB) gi|357478597|ref|XP_003609584.1| (e_value=2e-36) hypothetical protein MTR_4g118810 [Medicago truncatula];; (*SWP) sp|C6TBD0|CSPL6_SOYBN (e_value=1e-35) CASP-like protein 6 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G15630.1 (e_value=5e-30) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:8917527-8918683 FORWARD LENGTH=190;; (*ITAG) Solyc09g074550.2.1 (e_value=3e-66) genomic_reference:SL2.40ch09 gene_region:61869245-61870751 transcript_region:SL2.40ch09:61869245..61870751+ go_terms:GO:0005515 functional_description:"UPF0497 membrane protein 6 (AHRD V1 ***- U4976_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; GO:0005515 NbS00011279g0011.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|77 NbS00008878g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|359488847|ref|XP_003633831.1| (e_value=9e-31) PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Vitis vinifera];; (*TAIR) AT4G30400.1 (e_value=1e-12) | Symbols: | RING/U-box superfamily protein | chr4:14867068-14868486 FORWARD LENGTH=472;; (*ITAG) Solyc02g086950.1.1 (e_value=7e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44109658-44110131 transcript_region:SL2.40ch02:44109658..44110131+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008878g0006.1 protein AED:0.25 eAED:0.28 QI:0|0.8|0.66|1|0.8|0.66|6|315|371; (*GB) gi|225452496|ref|XP_002279099.1| (e_value=4e-155) PREDICTED: uncharacterized protein LOC100247524 [Vitis vinifera];; (*TAIR) AT5G14790.1 (e_value=1e-123) | Symbols: | ARM repeat superfamily protein | chr5:4784058-4785508 FORWARD LENGTH=346;; (*ITAG) Solyc02g086940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44106511-44108900 transcript_region:SL2.40ch02:44106511..44108900+ go_terms:GO:0005488 functional_description:"FAM179B protein (Fragment) (AHRD V1 *--- Q6P183_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00012584g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|370; (*GB) gi|231610|sp|P29790.1|ATPG_TOBAC (e_value=0.0) RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P29790|ATPG_TOBAC (e_value=0.0) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1;; (*TAIR) AT4G04640.1 (e_value=0.0) | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373;; (*ITAG) Solyc02g080540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ go_terms:GO:0030234 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0030234 NbS00012584g0009.1 protein AED:0.22 eAED:0.22 QI:285|0.87|0.82|1|0.75|0.82|17|0|1250; (*GB) gi|350538959|ref|NP_001234623.1| (e_value=0.0) starch synthase III [Solanum lycopersicum];; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=0.0) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1;; (*TAIR) AT1G11720.2 (e_value=0.0) | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094;; (*ITAG) Solyc02g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39335872-39353189 transcript_region:SL2.40ch02:39335872..39353189+ go_terms:GO:0009011 functional_description:"Glycogen synthase (AHRD V1 *-** D4ZXV2_SPIPL); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0009011 NbS00012584g0010.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|117; (*ITAG) Solyc02g080550.1.1 (e_value=3e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39328981-39329289 transcript_region:SL2.40ch02:39328981..39329289- functional_description:"Unknown Protein (AHRD V1)"; NbS00012584g0011.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|0|0|3|0|126; (*ITAG) Solyc02g080560.1.1 (e_value=1e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39332307-39332603 transcript_region:SL2.40ch02:39332307..39332603- functional_description:"Unknown Protein (AHRD V1)"; NbS00042310g0006.1 protein AED:0.18 eAED:0.20 QI:106|0.85|0.75|1|0.42|0.5|8|0|705; (*GB) gi|224140525|ref|XP_002323633.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6DFF6|KLH20_XENLA (e_value=6e-29) Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1;; (*TAIR) AT5G01660.1 (e_value=1e-173) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc09g015120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8040621-8045731 transcript_region:SL2.40ch09:8040621..8045731+ functional_description:"Kelch-like protein (AHRD V1 *-*- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00018105g0008.1 protein AED:0.00 eAED:0.00 QI:312|1|1|1|1|1|2|66|119; (*ITAG) Solyc09g015450.2.1 (e_value=4e-21) genomic_reference:SL2.40ch09 gene_region:8795936-8796733 transcript_region:SL2.40ch09:8795936..8796733- functional_description:"Unknown Protein (AHRD V1)"; NbS00018105g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|0|0|2|0|87; (*ITAG) Solyc09g015430.2.1 (e_value=8e-42) genomic_reference:SL2.40ch09 gene_region:8760115-8760776 transcript_region:SL2.40ch09:8760115..8760776- functional_description:"Unknown Protein (AHRD V1)"; NbS00018105g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.83|1|1|1|6|0|510; (*GB) gi|224139248|ref|XP_002323019.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01590.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr5:224249-226620 FORWARD LENGTH=527;; (*ITAG) Solyc09g013100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5502022-5508000 transcript_region:SL2.40ch09:5502022..5508000+ functional_description:"RNA binding protein (AHRD V1 *-*- Q3LWF1_BIGNA)"; NbS00015192g0001.1 protein AED:0.07 eAED:0.07 QI:371|1|1|1|0|0|4|1917|86; (*GB) gi|225424164|ref|XP_002284050.1| (e_value=5e-27) PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Vitis vinifera];; (*TAIR) AT5G13240.1 (e_value=9e-25) | Symbols: | transcription regulators | chr5:4225261-4227152 REVERSE LENGTH=224;; (*ITAG) Solyc05g008400.2.1 (e_value=1e-31) genomic_reference:SL2.40ch05 gene_region:2769541-2773239 transcript_region:SL2.40ch05:2769541..2773239+ go_terms:GO:0016564 functional_description:"Repressor of RNA polymerase III transcription MAF1 (AHRD V1 **** B6TPC2_MAIZE); contains Interpro domain(s) IPR017152 RNA polymerase III transcriptional repressor, MAF1 "; GO:0016564 NbS00055159g0005.1 protein AED:0.29 eAED:0.30 QI:0|0.5|0|1|1|1|3|0|284; (*GB) gi|350539793|ref|NP_001234530.1| (e_value=5e-38) WRKY transcription factor [Solanum lycopersicum];; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=6e-19) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.2 (e_value=2e-22) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281;; (*ITAG) Solyc10g009550.2.1 (e_value=4e-74) genomic_reference:SL2.40ch10 gene_region:3672838-3674913 transcript_region:SL2.40ch10:3672838..3674913- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- D3YEX5_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00041527g0004.1 protein AED:0.33 eAED:0.33 QI:169|1|1|1|0.83|0.69|13|632|195; (*GB) gi|255576513|ref|XP_002529148.1| (e_value=3e-102) Transmembrane protein TPARL, putative [Ricinus communis];; (*SWP) sp|Q9C6M1|GDT14_ARATH (e_value=9e-98) GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1;; (*TAIR) AT1G25520.1 (e_value=7e-99) | Symbols: | Uncharacterized protein family (UPF0016) | chr1:8962324-8964173 FORWARD LENGTH=230;; (*ITAG) Solyc05g009690.2.1 (e_value=1e-122) genomic_reference:SL2.40ch05 gene_region:3885603-3891659 transcript_region:SL2.40ch05:3885603..3891659+ go_terms:GO:0005515 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0005515 NbS00015502g0019.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0.33|1|1|1|3|0|426; (*GB) gi|359474468|ref|XP_002277716.2| (e_value=5e-103) PREDICTED: zinc finger CCCH domain-containing protein 12-like [Vitis vinifera];; (*SWP) sp|Q84UQ3|C3H56_ORYSJ (e_value=1e-71) Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1;; (*TAIR) AT1G32360.1 (e_value=1e-68) | Symbols: | Zinc finger (CCCH-type) family protein | chr1:11673325-11675162 FORWARD LENGTH=384;; (*ITAG) Solyc06g072720.2.1 (e_value=3e-133) genomic_reference:SL2.40ch06 gene_region:41239040-41242945 transcript_region:SL2.40ch06:41239040..41242945- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 56 (AHRD V1 ***- C3H56_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00015502g0012.1 protein AED:0.25 eAED:0.38 QI:81|0.5|0.66|1|0|0|3|0|80; (*GB) gi|116788059|gb|ABK24740.1| (e_value=9e-20) unknown [Picea sitchensis];; (*SWP) sp|P93654|SYP22_ARATH (e_value=1e-16) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=1e-17) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc06g072760.2.1 (e_value=1e-28) genomic_reference:SL2.40ch06 gene_region:41260813-41262392 transcript_region:SL2.40ch06:41260813..41262392- go_terms:GO:0005484 functional_description:"Syntaxin (AHRD V1 ***- Q8LJR4_SOYBN); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00015502g0002.1 protein AED:0.01 eAED:0.01 QI:205|0|0.5|1|0|1|2|1053|503; (*GB) gi|225454755|ref|XP_002273949.1| (e_value=1e-162) PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera];; (*SWP) sp|Q84T61|HSFA1_ORYSJ (e_value=4e-126) Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1;; (*TAIR) AT5G16820.2 (e_value=5e-118) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc06g072750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41255352-41258348 transcript_region:SL2.40ch06:41255352..41258348+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00015502g0017.1 protein AED:0.27 eAED:0.27 QI:708|0.83|1|1|1|1|7|373|459; (*GB) gi|6682871|dbj|BAA88922.1| (e_value=0.0) sigma factor [Nicotiana tabacum];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=2e-31) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G64860.1 (e_value=1e-158) | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502;; (*ITAG) Solyc06g072710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41233970-41238889 transcript_region:SL2.40ch06:41233970..41238889+ go_terms:GO:0005515 functional_description:"RNA polymerase sigma factor (AHRD V1 ***- Q8S9D0_GUITH); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0005515 NbS00015502g0003.1 protein AED:0.33 eAED:0.37 QI:0|0|0|1|1|1|3|0|337; (*GB) gi|225427161|ref|XP_002279736.1| (e_value=6e-111) PREDICTED: inositol-tetrakisphosphate 1-kinase 1-like [Vitis vinifera];; (*SWP) sp|Q9SBA5|ITPK1_ARATH (e_value=1e-94) Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=1e-95) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc06g072740.1.1 (e_value=3e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41252095-41253048 transcript_region:SL2.40ch06:41252095..41253048+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00016831g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0.33|3|0|200; (*GB) gi|221220532|gb|ACM08927.1| (e_value=4e-97) Tubulin beta-2C chain [Salmo salar];; (*SWP) sp|P29514|TBB6_ARATH (e_value=6e-76) Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1;; (*TAIR) AT5G12250.1 (e_value=5e-77) | Symbols: TUB6 | beta-6 tubulin | chr5:3961317-3962971 REVERSE LENGTH=449;; (*ITAG) Solyc03g118760.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:61639783-61641544 transcript_region:SL2.40ch03:61639783..61641544- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HNJ2_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00007134g0019.1 protein AED:0.13 eAED:0.20 QI:0|0.8|0.66|1|0.8|0.66|6|0|332; (*GB) gi|225433839|ref|XP_002263125.1| (e_value=0.0) PREDICTED: biotin synthase [Vitis vinifera];; (*SWP) sp|P54967|BIOB_ARATH (e_value=0.0) Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1;; (*TAIR) AT2G43360.1 (e_value=0.0) | Symbols: BIO2, BIOB | Radical SAM superfamily protein | chr2:18010918-18013129 REVERSE LENGTH=378;; (*ITAG) Solyc06g073470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41670079-41675597 transcript_region:SL2.40ch06:41670079..41675597- go_terms:GO:0008270,GO:0004076 functional_description:"Biotin synthase (AHRD V1 **** Q09JZ3_BRARP); contains Interpro domain(s) IPR002684 Biotin synthase "; GO:0008270,GO:0004076 NbS00007134g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|621; (*GB) gi|225433795|ref|XP_002273517.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266921 [Vitis vinifera];; (*TAIR) AT2G43250.1 (e_value=0.0) | Symbols: | unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17977619-17979496 FORWARD LENGTH=625;; (*ITAG) Solyc06g073490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41684992-41686917 transcript_region:SL2.40ch06:41684992..41686917- go_terms:GO:0006468 functional_description:"Unknown Protein (AHRD V1)"; GO:0006468 NbS00007134g0015.1 protein AED:0.30 eAED:0.30 QI:192|0.88|1|1|0.88|0.8|10|190|344; (*GB) gi|255579398|ref|XP_002530543.1| (e_value=7e-144) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5T1Q4|S35F1_HUMAN (e_value=7e-55) Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2;; (*TAIR) AT3G59310.1 (e_value=7e-128) | Symbols: | Eukaryotic protein of unknown function (DUF914) | chr3:21922316-21924313 REVERSE LENGTH=332;; (*ITAG) Solyc06g073520.2.1 (e_value=8e-174) genomic_reference:SL2.40ch06 gene_region:41703273-41710440 transcript_region:SL2.40ch06:41703273..41710440- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member F1 (AHRD V1 **-- B6U001_MAIZE); contains Interpro domain(s) IPR009262 Protein of unknown function DUF914, eukaryotic "; GO:0022857 NbS00007134g0001.1 protein AED:0.32 eAED:0.32 QI:249|0.90|0.83|1|1|1|12|191|472; (*GB) gi|224069026|ref|XP_002302882.1| (e_value=5e-170) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=6e-34) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT3G59300.1 (e_value=8e-140) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:21918667-21921877 FORWARD LENGTH=459;; (*ITAG) Solyc06g073500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41689633-41698876 transcript_region:SL2.40ch06:41689633..41698876+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012909g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.85|1|0.83|0.71|7|328|440; (*GB) gi|147862095|emb|CAN80883.1| (e_value=1e-101) hypothetical protein VITISV_018652 [Vitis vinifera];; (*TAIR) AT5G12930.1 (e_value=1e-64) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4083155-4085222 REVERSE LENGTH=439;; (*ITAG) Solyc11g056640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:44980200-44984263 transcript_region:SL2.40ch11:44980200..44984263- functional_description:"Unknown Protein (AHRD V1)"; NbS00033131g0004.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|487; (*GB) gi|224056785|ref|XP_002299022.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=6e-141) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30760.1 (e_value=5e-172) | Symbols: | FAD-binding Berberine family protein | chr1:10918321-10920441 FORWARD LENGTH=534;; (*ITAG) Solyc02g070110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34521770-34523362 transcript_region:SL2.40ch02:34521770..34523362- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00033131g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.83|1|0.6|0.5|6|198|549; (*GB) gi|225444143|ref|XP_002268764.1| (e_value=0.0) PREDICTED: patellin-4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=2e-154) Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2;; (*TAIR) AT1G30690.2 (e_value=1e-155) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540;; (*ITAG) Solyc02g070210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34552976-34555462 transcript_region:SL2.40ch02:34552976..34555462- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C6HEF9_AJECH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00033131g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|0.8|0.83|6|337|159; (*GB) gi|356533161|ref|XP_003535136.1| (e_value=3e-63) PREDICTED: uncharacterized protein LOC100814805 [Glycine max];; (*TAIR) AT1G30660.1 (e_value=4e-58) | Symbols: | nucleic acid binding;nucleic acid binding | chr1:10876853-10879017 FORWARD LENGTH=337;; (*ITAG) Solyc02g070220.2.1 (e_value=1e-79) genomic_reference:SL2.40ch02 gene_region:34557704-34563659 transcript_region:SL2.40ch02:34557704..34563659- functional_description:"DNA primase/helicase (AHRD V1 **-- C3QJ18_9BACE); contains Interpro domain(s) IPR006154 Toprim domain, subgroup "; NbS00012287g0005.1 protein AED:0.20 eAED:0.21 QI:0|1|0|1|0.5|0.66|3|0|209; (*GB) gi|224072753|ref|XP_002303864.1| (e_value=2e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80940.1 (e_value=1e-77) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:30410959-30411943 FORWARD LENGTH=213;; (*ITAG) Solyc03g117670.2.1 (e_value=1e-116) genomic_reference:SL2.40ch03 gene_region:60801295-60803799 transcript_region:SL2.40ch03:60801295..60803799+ functional_description:"Snf1-related kinase interacting protein SKI2 (AHRD V1 *-*- A3KLL3_PHYPA)"; NbS00012287g0006.1 protein AED:0.28 eAED:0.29 QI:0|1|0.83|1|1|1|6|0|530; (*GB) gi|225445774|ref|XP_002274694.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251901 [Vitis vinifera];; (*TAIR) AT2G24100.1 (e_value=3e-150) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466;; (*ITAG) Solyc03g117680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60804015-60807706 transcript_region:SL2.40ch03:60804015..60807706- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00008313g0015.1 protein AED:0.08 eAED:0.08 QI:241|0.87|0.77|1|0.87|0.77|9|263|508; (*GB) gi|224102697|ref|XP_002312781.1| (e_value=5e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT1G27070.1 (e_value=4e-90) | Symbols: | 5'-AMP-activated protein kinase-related | chr1:9396945-9399225 REVERSE LENGTH=532;; (*ITAG) Solyc05g006930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1531674-1536511 transcript_region:SL2.40ch05:1531674..1536511+ functional_description:"5'-AMP-activated protein kinase subunit beta-2 (AHRD V1 *--- AAKB2_RAT)"; NbS00008313g0016.1 protein AED:0.25 eAED:0.26 QI:255|1|0.5|1|1|1|2|0|331; (*GB) gi|358248114|ref|NP_001240072.1| (e_value=5e-105) uncharacterized protein LOC100813905 [Glycine max];; (*TAIR) AT2G02590.1 (e_value=3e-96) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:704977-706494 FORWARD LENGTH=324;; (*ITAG) Solyc05g006970.2.1 (e_value=1e-145) genomic_reference:SL2.40ch05 gene_region:1552685-1555321 transcript_region:SL2.40ch05:1552685..1555321+ functional_description:"Small multidrug export protein (AHRD V1 *-*- D0GL52_9FUSO); contains Interpro domain(s) IPR009577 Putative small multi-drug export "; NbS00008313g0019.1 protein AED:0.16 eAED:0.16 QI:129|1|1|1|1|1|2|908|225; (*GB) gi|356498160|ref|XP_003517921.1| (e_value=2e-51) PREDICTED: uncharacterized protein At1g27050-like [Glycine max];; (*SWP) sp|P0CJ66|Y1705_ARATH (e_value=1e-46) Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1;; (*TAIR) AT1G27050.1 (e_value=1e-47) | Symbols: ATHB54, HB54 | homeobox protein 54 | chr1:9393706-9394408 FORWARD LENGTH=205;; (*ITAG) Solyc05g006960.2.1 (e_value=1e-119) genomic_reference:SL2.40ch05 gene_region:1549755-1551692 transcript_region:SL2.40ch05:1549755..1551692- go_terms:GO:0003676 functional_description:"Homeobox-leucine zipper protein ATHB-54 (AHRD V1 ***- ATB54_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00008313g0017.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.62|0.55|9|156|439; (*GB) gi|225424889|ref|XP_002269566.1| (e_value=2e-154) PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|Q80YD6|SRGEF_MOUSE (e_value=3e-33) Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2;; (*TAIR) AT1G27060.1 (e_value=1e-144) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr1:9395023-9396673 FORWARD LENGTH=386;; (*ITAG) Solyc05g006940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1536690-1542139 transcript_region:SL2.40ch05:1536690..1542139- go_terms:GO:0005087,GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087,GO:0008536 NbS00008313g0027.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|0.33|0.5|4|0|290; (*GB) gi|255558238|ref|XP_002520146.1| (e_value=7e-94) homeobox protein, putative [Ricinus communis];; (*SWP) sp|Q02283|HAT5_ARATH (e_value=1e-41) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=9e-43) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc05g006980.2.1 (e_value=9e-153) genomic_reference:SL2.40ch05 gene_region:1561232-1563997 transcript_region:SL2.40ch05:1561232..1563997- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0043565 NbS00008313g0020.1 protein AED:0.47 eAED:0.87 QI:0|0|0|1|0|0|3|0|82 NbS00044174g0006.1 protein AED:0.11 eAED:0.11 QI:164|1|1|1|0.66|0.7|10|532|1113; (*GB) gi|359479942|ref|XP_002270203.2| (e_value=2e-131) PREDICTED: BRCT domain-containing protein At4g02110-like [Vitis vinifera];; (*SWP) sp|O04251|Y4211_ARATH (e_value=8e-102) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT4G02110.1 (e_value=6e-103) | Symbols: | transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329;; (*ITAG) Solyc06g009680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3623643-3632157 transcript_region:SL2.40ch06:3623643..3632157- go_terms:GO:0008270,GO:0005622 functional_description:"BRCT domain-containing protein (AHRD V1 *--- C5FMN4_NANOT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00044174g0009.1 protein AED:0.11 eAED:0.12 QI:0|0.33|0.25|0.75|1|1|4|0|597; (*GB) gi|356505620|ref|XP_003521588.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800231 [Glycine max];; (*TAIR) AT4G02100.1 (e_value=0.0) | Symbols: | Heat shock protein DnaJ with tetratricopeptide repeat | chr4:930228-932049 FORWARD LENGTH=546;; (*ITAG) Solyc01g079580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71185958-71188543 transcript_region:SL2.40ch01:71185958..71188543+ go_terms:GO:0005488,GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7LGN0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0031072 NbS00048674g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|75150330|sp|Q8GSM7.1|HCT_TOBAC (e_value=7e-45) RecName: Full=Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase; AltName: Full=Hydroxycinnamoyl transferase;; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=2e-46) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=6e-35) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=4e-44) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00048674g0009.1 protein AED:0.06 eAED:0.06 QI:59|1|1|1|1|1|5|365|490; (*GB) gi|224098656|ref|XP_002311231.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55990.1 (e_value=0.0) | Symbols: ESK1, TBL29 | Plant protein of unknown function (DUF828) | chr3:20780410-20782931 FORWARD LENGTH=487;; (*ITAG) Solyc06g051350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31152315-31155133 transcript_region:SL2.40ch06:31152315..31155133- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00006636g0002.1 protein AED:0.15 eAED:0.23 QI:0|0|0|1|1|1|2|0|1190; (*GB) gi|296090042|emb|CBI39861.3| (e_value=1e-60) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G56240.1 (e_value=3e-27) | Symbols: | BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:22760088-22763539 REVERSE LENGTH=986;; (*ITAG) Solyc07g066200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64894379-64899799 transcript_region:SL2.40ch07:64894379..64899799- functional_description:"Genomic DNA chromosome 5 TAC clone K24C1 (AHRD V1 *-*- Q9FH15_ARATH)"; NbS00006636g0003.1 protein AED:0.45 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|224061663|ref|XP_002300592.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT5G56240.2 (e_value=5e-13) | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1). | chr5:22760088-22763539 REVERSE LENGTH=987;; (*ITAG) Solyc07g066200.2.1 (e_value=1e-72) genomic_reference:SL2.40ch07 gene_region:64894379-64899799 transcript_region:SL2.40ch07:64894379..64899799- functional_description:"Genomic DNA chromosome 5 TAC clone K24C1 (AHRD V1 *-*- Q9FH15_ARATH)"; NbS00033833g0001.1 protein AED:0.00 eAED:0.00 QI:222|1|1|1|0.5|0.33|3|402|204; (*GB) gi|225458509|ref|XP_002284218.1| (e_value=6e-88) PREDICTED: uncharacterized protein LOC100255850 [Vitis vinifera];; (*TAIR) AT5G06430.1 (e_value=1e-73) | Symbols: | Thioredoxin superfamily protein | chr5:1963580-1964251 REVERSE LENGTH=194;; (*ITAG) Solyc10g006520.2.1 (e_value=3e-121) genomic_reference:SL2.40ch10 gene_region:1092969-1095461 transcript_region:SL2.40ch10:1092969..1095461- functional_description:"Thioredoxin-like protein (AHRD V1 *-*- Q8YZA9_ANASP); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00007366g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.9|0.90|1|0.9|0.90|11|246|505; (*GB) gi|225461399|ref|XP_002284849.1| (e_value=0.0) PREDICTED: nucleolar GTP-binding protein 2-like [Vitis vinifera];; (*SWP) sp|Q99LH1|NOG2_MOUSE (e_value=2e-176) Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=2;; (*TAIR) AT1G52980.1 (e_value=0.0) | Symbols: | GTP-binding family protein | chr1:19737493-19740201 FORWARD LENGTH=576;; (*ITAG) Solyc07g063270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63008778-63014711 transcript_region:SL2.40ch07:63008778..63014711- go_terms:GO:0005515,GO:0003924 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B6TMG1_MAIZE); contains Interpro domain(s) IPR012971 NGP1, N-terminal "; GO:0005515,GO:0003924 NbS00037871g0005.1 protein AED:0.08 eAED:0.08 QI:172|0.76|0.71|1|0.76|0.85|14|412|982; (*GB) gi|255549649|ref|XP_002515876.1| (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis];; (*SWP) sp|Q9C585|UBP8_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2;; (*TAIR) AT5G22030.1 (e_value=0.0) | Symbols: UBP8 | ubiquitin-specific protease 8 | chr5:7290155-7296344 REVERSE LENGTH=913;; (*ITAG) Solyc06g073930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42048669-42061206 transcript_region:SL2.40ch06:42048669..42061206- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9RQ57_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00033057g0001.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|289; (*ITAG) Solyc09g059560.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50448836-50449258 transcript_region:SL2.40ch09:50448836..50449258+ go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00033057g0009.1 protein AED:0.20 eAED:0.23 QI:0|0.11|0.1|0.6|0.33|0.5|10|0|692; (*GB) gi|255583311|ref|XP_002532418.1| (e_value=1e-120) Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=5e-19) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33830.1 (e_value=1e-104) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16220324-16222676 REVERSE LENGTH=576;; (*ITAG) Solyc11g043160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34983630-34987897 transcript_region:SL2.40ch11:34983630..34987897- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00000877g0020.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.63|1|0.5|0.54|11|804|915; (*GB) gi|359478824|ref|XP_002283784.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257047 [Vitis vinifera];; (*SWP) sp|Q9BVG8|KIFC3_HUMAN (e_value=2e-61) Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4;; (*TAIR) AT1G55550.1 (e_value=3e-143) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:20748915-20752862 FORWARD LENGTH=859;; (*ITAG) Solyc01g049820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:41683950-41688584 transcript_region:SL2.40ch01:41683950..41688584- functional_description:"Unknown Protein (AHRD V1)"; NbS00000877g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|0.83|0.8|0.66|6|939|307; (*GB) gi|296085803|emb|CBI31127.3| (e_value=3e-131) unnamed protein product [Vitis vinifera];; (*SWP) sp|B3QUL4|FOLD_CHLT3 (e_value=5e-74) Bifunctional protein FolD OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=folD PE=3 SV=1;; (*TAIR) AT2G38660.3 (e_value=1e-119) | Symbols: | Amino acid dehydrogenase family protein | chr2:16166392-16168194 FORWARD LENGTH=352;; (*ITAG) Solyc01g094280.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:77576917-77580139 transcript_region:SL2.40ch01:77576917..77580139- go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00000877g0018.1 protein AED:0.25 eAED:0.25 QI:0|0|0.5|1|0|0|2|335|274; (*GB) gi|225435834|ref|XP_002283791.1| (e_value=4e-113) PREDICTED: pentatricopeptide repeat-containing protein At5g56310 [Vitis vinifera];; (*SWP) sp|Q9FMA1|PP433_ARATH (e_value=2e-92) Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1;; (*TAIR) AT5G56310.1 (e_value=2e-93) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22802322-22803914 FORWARD LENGTH=530;; (*ITAG) Solyc01g049810.2.1 (e_value=6e-159) genomic_reference:SL2.40ch01 gene_region:41678686-41680567 transcript_region:SL2.40ch01:41678686..41680567+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00000877g0011.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|1|1|5|0|241; (*GB) gi|147774370|emb|CAN72395.1| (e_value=2e-120) hypothetical protein VITISV_041199 [Vitis vinifera];; (*SWP) sp|Q9SKZ1|PUR_ARATH (e_value=4e-108) Transcription factor Pur-alpha 1 OS=Arabidopsis thaliana GN=PURA1 PE=1 SV=2;; (*TAIR) AT2G32080.1 (e_value=3e-109) | Symbols: PUR ALPHA-1 | purin-rich alpha 1 | chr2:13642716-13644036 REVERSE LENGTH=296;; (*ITAG) Solyc01g049680.2.1 (e_value=9e-78) genomic_reference:SL2.40ch01 gene_region:40894134-40895807 transcript_region:SL2.40ch01:40894134..40895807- go_terms:GO:0003676 functional_description:"Transcriptional activator protein Pur-alpha (AHRD V1 *-*- C1BSV9_9MAXI); contains Interpro domain(s) IPR006628 PUR-alpha/beta/gamma, DNA/RNA-binding "; GO:0003676 NbS00000877g0022.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|0.5|0.33|3|0|77 NbS00050263g0003.1 protein AED:0.44 eAED:0.65 QI:54|0|0|1|0|0|2|0|85 NbS00017241g0008.1 protein AED:0.08 eAED:0.19 QI:562|0.88|0.8|1|0.66|0.7|10|0|1134; (*GB) gi|296084430|emb|CBI24989.3| (e_value=8e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10650.1 (e_value=1e-39) | Symbols: | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309;; (*ITAG) Solyc05g055110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64055678-64062066 transcript_region:SL2.40ch05:64055678..64062066+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017241g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|147777086|emb|CAN70065.1| (e_value=2e-18) hypothetical protein VITISV_015730 [Vitis vinifera];; (*TAIR) AT3G10650.1 (e_value=2e-12) | Symbols: | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309;; (*ITAG) Solyc05g055130.1.1 (e_value=2e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:64063330-64063620 transcript_region:SL2.40ch05:64063330..64063620+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017241g0005.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|59 NbS00002086g0003.1 protein AED:0.35 eAED:0.35 QI:146|0.66|0.75|1|0.66|0.5|4|0|153; (*GB) gi|431908|emb|CAA53782.1| (e_value=3e-51) transcription factor [Nicotiana tabacum];; (*SWP) sp|O64645|SOC1_ARATH (e_value=5e-42) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=4e-43) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc08g080100.2.1 (e_value=6e-37) genomic_reference:SL2.40ch08 gene_region:60586947-60598079 transcript_region:SL2.40ch08:60586947..60598079- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00027014g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|356538405|ref|XP_003537694.1| (e_value=8e-46) PREDICTED: RING-H2 finger protein ATL8-like [Glycine max];; (*SWP) sp|Q8LC69|ATL8_ARATH (e_value=2e-43) RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2;; (*TAIR) AT1G76410.1 (e_value=2e-44) | Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185;; (*ITAG) Solyc02g082420.2.1 (e_value=2e-71) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00044787g0007.1 protein AED:0.27 eAED:0.30 QI:164|0.54|0.66|0.91|0.72|0.66|12|502|584; (*GB) gi|242097170|ref|XP_002439075.1| (e_value=3e-118) hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor];; (*SWP) sp|Q5Z5A8|P2SAF_ORYSJ (e_value=2e-118) Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1;; (*TAIR) AT5G23120.1 (e_value=6e-115) | Symbols: HCF136 | photosystem II stability/assembly factor, chloroplast (HCF136) | chr5:7778154-7780463 FORWARD LENGTH=403;; (*ITAG) Solyc02g014150.2.1 (e_value=1e-112) genomic_reference:SL2.40ch02 gene_region:6519093-6531932 transcript_region:SL2.40ch02:6519093..6531932+ go_terms:GO:0005515 functional_description:"Photosystem II stability/assembly factor Ycf48-like protein (AHRD V1 **-- B0C6T3_ACAM1); contains Interpro domain(s) IPR016705 Photosystem II stability/assembly factor, HCF136 "; GO:0005515 NbS00029730g0006.1 protein AED:0.29 eAED:0.29 QI:261|1|0.5|1|1|0.75|4|0|549; (*GB) gi|255584380|ref|XP_002532924.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT5G04500.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc11g007770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1988294-1993338 transcript_region:SL2.40ch11:1988294..1993338- go_terms:GO:0031227 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0031227 NbS00029730g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|356535533|ref|XP_003536299.1| (e_value=2e-158) PREDICTED: uncharacterized protein LOC100789310 [Glycine max];; (*SWP) sp|Q9Y169|EXT2_DROME (e_value=7e-35) Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1;; (*TAIR) AT5G04500.1 (e_value=4e-139) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc11g007770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1988294-1993338 transcript_region:SL2.40ch11:1988294..1993338- go_terms:GO:0031227 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0031227 NbS00041284g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|0.66|0.5|4|432|477; (*GB) gi|18253083|dbj|BAB83948.1| (e_value=0.0) CIG1 [Nicotiana tabacum];; (*SWP) sp|Q6NKX1|PROD2_ARATH (e_value=8e-169) Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1;; (*TAIR) AT5G38710.1 (e_value=6e-170) | Symbols: | Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476;; (*ITAG) Solyc02g089630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45957682-45960380 transcript_region:SL2.40ch02:45957682..45960380- go_terms:GO:0005515,GO:0004657 functional_description:"Proline dehydrogenase (AHRD V1 **** A1E289_ACTDE); contains Interpro domain(s) IPR015659 Proline oxidase "; GO:0005515,GO:0004657 NbS00015481g0001.1 protein AED:0.12 eAED:0.13 QI:0|1|0|1|1|1|2|0|509; (*GB) gi|225431902|ref|XP_002276533.1| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q8VZF1|AEE7_ARATH (e_value=0.0) Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1;; (*TAIR) AT3G16910.1 (e_value=0.0) | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | chr3:5773231-5775411 REVERSE LENGTH=569;; (*ITAG) Solyc12g099360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64880055-64882904 transcript_region:SL2.40ch12:64880055..64882904+ go_terms:GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858 NbS00013283g0010.1 protein AED:0.19 eAED:0.19 QI:241|0.85|0.86|1|0.42|0.53|15|207|600; (*GB) gi|225423763|ref|XP_002277216.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257645 [Vitis vinifera];; (*TAIR) AT1G50120.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:18562302-18566015 FORWARD LENGTH=532;; (*ITAG) Solyc11g019960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9826267-9837968 transcript_region:SL2.40ch11:9826267..9837968- functional_description:"Retrograde Golgi transport protein RGP1 homolog (AHRD V1 *--- RGP1_HUMAN); contains Interpro domain(s) IPR014756 Immunoglobulin E-set "; NbS00013283g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|12|404|486; (*GB) gi|296084832|emb|CBI27714.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O35704|SPTC1_MOUSE (e_value=2e-117) Serine palmitoyltransferase 1 OS=Mus musculus GN=Sptlc1 PE=2 SV=2;; (*TAIR) AT4G36480.2 (e_value=0.0) | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain base1 | chr4:17218598-17221124 FORWARD LENGTH=482;; (*ITAG) Solyc11g019950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:9815596-9821179 transcript_region:SL2.40ch11:9815596..9821179- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase (AHRD V1 **-- D3L310_9BACT); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00061960g0001.1 protein AED:0.14 eAED:0.14 QI:34|1|0.5|1|0|0|2|0|120 NbS00015672g0008.1 protein AED:0.22 eAED:0.25 QI:218|0.66|0.75|1|1|1|4|0|348; (*GB) gi|227809536|gb|ACP40987.1| (e_value=0.0) cytokinin oxidase/dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9LY71|CKX6_ARATH (e_value=2e-162) Cytokinin dehydrogenase 6 OS=Arabidopsis thaliana GN=CKX6 PE=2 SV=2;; (*TAIR) AT3G63440.1 (e_value=1e-163) | Symbols: ATCKX6, CKX6, ATCKX7 | cytokinin oxidase/dehydrogenase 6 | chr3:23424291-23426265 FORWARD LENGTH=533;; (*ITAG) Solyc01g088160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74771691-74773978 transcript_region:SL2.40ch01:74771691..74773978- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase (AHRD V1 **** C3VPM6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00010887g0002.1 protein AED:0.21 eAED:0.25 QI:0|1|0|1|1|1|2|0|127; (*GB) gi|255557465|ref|XP_002519763.1| (e_value=7e-57) Leucoanthocyanidin dioxygenase, putative [Ricinus communis];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=2e-45) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=1e-46) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071430.2.1 (e_value=3e-65) genomic_reference:SL2.40ch02 gene_region:35460364-35462257 transcript_region:SL2.40ch02:35460364..35462257- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_ACTDE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00049794g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.44|0.88|0.37|0.44|9|0|435; (*GB) gi|109649528|gb|ABG36709.1| (e_value=0.0) cytochrome P450 CYP85A1 [Nicotiana tabacum];; (*SWP) sp|Q43147|C85A1_SOLLC (e_value=0.0) Cytochrome P450 85A1 OS=Solanum lycopersicum GN=CYP85A1 PE=2 SV=1;; (*TAIR) AT5G38970.1 (e_value=0.0) | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassinosteroid-6-oxidase 1 | chr5:15594935-15597774 REVERSE LENGTH=465;; (*ITAG) Solyc02g089160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45622003-45624825 transcript_region:SL2.40ch02:45622003..45624825+ go_terms:GO:0004497 functional_description:"Cytochrome P450"; GO:0004497 NbS00049794g0005.1 protein AED:0.86 eAED:0.94 QI:0|0|0|0.33|0.75|0.88|9|0|201; (*GB) gi|356501644|ref|XP_003519634.1| (e_value=1e-18) PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Glycine max];; (*TAIR) AT3G13180.1 (e_value=1e-19) | Symbols: | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein | chr3:4236326-4239966 REVERSE LENGTH=523;; (*ITAG) Solyc12g015710.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5687873-5695832 transcript_region:SL2.40ch12:5687873..5695832- go_terms:GO:0006355 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 ***- D5H7I5_SALRM); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0006355 NbS00020798g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.66|1|1|3|0|263; (*GB) gi|93115319|gb|ABE98328.1| (e_value=1e-21) SRC2-like protein [Capsicum annuum];; (*ITAG) Solyc01g099390.2.1 (e_value=5e-46) genomic_reference:SL2.40ch01 gene_region:81426019-81427337 transcript_region:SL2.40ch01:81426019..81427337- go_terms:GO:0005515 functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J6_NICBE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005515 NbS00036379g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|334902911|gb|AEH25587.1| (e_value=1e-19) transposase [Solanum demissum];; (*ITAG) Solyc04g039710.1.1 (e_value=5e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00036379g0008.1 protein AED:0.13 eAED:0.13 QI:30|1|1|1|0.75|0.8|5|191|367; (*GB) gi|225460231|ref|XP_002278194.1| (e_value=0.0) PREDICTED: GDSL esterase/lipase At1g33811 [Vitis vinifera];; (*SWP) sp|Q8L5Z1|GDL17_ARATH (e_value=0.0) GDSL esterase/lipase At1g33811 OS=Arabidopsis thaliana GN=At1g33811 PE=2 SV=1;; (*TAIR) AT1G33811.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:12267918-12269690 FORWARD LENGTH=370;; (*ITAG) Solyc11g031960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:20742972-20745484 transcript_region:SL2.40ch11:20742972..20745484- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g33811 (AHRD V1 ***- GDL17_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00021429g0001.1 protein AED:0.06 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|180; (*GB) gi|42570018|ref|NP_671802.2| (e_value=1e-31) Mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=6e-33) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=3e-34) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g028150.1.1 (e_value=5e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00021429g0008.1 protein AED:0.30 eAED:0.30 QI:333|0.88|0.9|1|0.55|0.6|10|206|479; (*GB) gi|30687791|ref|NP_850312.1| (e_value=9e-179) transmembrane amino acid transporter-like protein [Arabidopsis thaliana];; (*SWP) sp|P47082|AVT1_YEAST (e_value=5e-31) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT2G39130.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr2:16323171-16326744 REVERSE LENGTH=550;; (*ITAG) Solyc11g008440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2646308-2649734 transcript_region:SL2.40ch11:2646308..2649734+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter (AHRD V1 **** B9HLH9_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00021429g0009.1 protein AED:0.30 eAED:0.30 QI:117|1|1|1|0.25|0.6|5|199|192; (*GB) gi|359486613|ref|XP_002273467.2| (e_value=1e-69) PREDICTED: thioredoxin-like 3-2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8VZT6|TRL32_ARATH (e_value=1e-64) Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1;; (*TAIR) AT5G04260.1 (e_value=1e-65) | Symbols: WCRKC2 | WCRKC thioredoxin 2 | chr5:1178901-1180022 REVERSE LENGTH=192;; (*ITAG) Solyc11g008450.1.1 (e_value=4e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2650642-2654582 transcript_region:SL2.40ch11:2650642..2654582+ go_terms:GO:0045454 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7LXH0_ARALY); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00051435g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|2246454|gb|AAB62808.1| (e_value=0.0) S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum];; (*SWP) sp|Q39227|SMT2_ARATH (e_value=0.0) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=0.0) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc01g111830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00020130g0009.1 protein AED:0.00 eAED:0.00 QI:196|1|1|1|1|1|3|144|143; (*GB) gi|357495041|ref|XP_003617809.1| (e_value=4e-49) hypothetical protein MTR_5g095700 [Medicago truncatula];; (*TAIR) AT5G55640.1 (e_value=6e-44) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22533244-22533923 REVERSE LENGTH=149;; (*ITAG) Solyc07g065480.2.1 (e_value=4e-82) genomic_reference:SL2.40ch07 gene_region:64435447-64438935 transcript_region:SL2.40ch07:64435447..64438935- functional_description:"Unknown Protein (AHRD V1)"; NbS00020130g0010.1 protein AED:0.14 eAED:0.14 QI:116|0.8|0.83|1|0.6|0.83|6|409|412; (*GB) gi|224056451|ref|XP_002298863.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P87131|CYSK2_SCHPO (e_value=4e-101) Cysteine synthase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cys12 PE=2 SV=1;; (*TAIR) AT1G55880.1 (e_value=0.0) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr1:20899292-20901140 REVERSE LENGTH=421;; (*ITAG) Solyc07g065470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64431786-64435368 transcript_region:SL2.40ch07:64431786..64435368+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** A5B2H2_VITVI); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0004124 NbS00031881g0014.1 protein AED:0.17 eAED:0.18 QI:95|0|0.5|1|1|1|2|0|213; (*GB) gi|27805638|sp|Q94EG3.1|NEC1_NICLS (e_value=4e-138) RecName: Full=Nectarin-1; AltName: Full=Superoxide dismutase [Mn]; Flags: Precursor;; (*SWP) sp|Q94EG3|NEC1_NICLS (e_value=1e-139) Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=3e-83) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102380.2.1 (e_value=3e-99) genomic_reference:SL2.40ch01 gene_region:82973903-82974888 transcript_region:SL2.40ch01:82973903..82974888+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O64439_SOLLC); contains Interpro domain(s) IPR019780 Germin, manganese binding site "; GO:0045735,GO:0048046 NbS00031881g0012.1 protein AED:0.17 eAED:0.19 QI:0|0.4|0.36|0.81|1|1|11|176|742; (*GB) gi|255555843|ref|XP_002518957.1| (e_value=5e-106) transporter, putative [Ricinus communis];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=4e-28) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G10390.2 (e_value=8e-91) | Symbols: | Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041;; (*ITAG) Solyc02g093330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48807406-48814692 transcript_region:SL2.40ch02:48807406..48814692+ go_terms:GO:0005215 functional_description:"Nup98 (Fragment) (AHRD V1 *--- A1YK38_DROME); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00031881g0013.1 protein AED:0.32 eAED:0.40 QI:33|0.33|0.25|1|1|1|4|0|189; (*ITAG) Solyc02g093330.2.1 (e_value=2e-11) genomic_reference:SL2.40ch02 gene_region:48807406-48814692 transcript_region:SL2.40ch02:48807406..48814692+ go_terms:GO:0005215 functional_description:"Nup98 (Fragment) (AHRD V1 *--- A1YK38_DROME); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00031881g0006.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|224056703|ref|XP_002298981.1| (e_value=8e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=2e-13) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G10390.2 (e_value=1e-34) | Symbols: | Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041;; (*ITAG) Solyc02g093330.2.1 (e_value=1e-42) genomic_reference:SL2.40ch02 gene_region:48807406-48814692 transcript_region:SL2.40ch02:48807406..48814692+ go_terms:GO:0005215 functional_description:"Nup98 (Fragment) (AHRD V1 *--- A1YK38_DROME); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00056807g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|450; (*GB) gi|3283996|gb|AAC25423.1| (e_value=0.0) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|P28582|CDPK_DAUCA (e_value=5e-169) Calcium-dependent protein kinase OS=Daucus carota PE=2 SV=2;; (*TAIR) AT4G04720.1 (e_value=8e-164) | Symbols: CPK21 | calcium-dependent protein kinase 21 | chr4:2394817-2397631 REVERSE LENGTH=531;; (*ITAG) Solyc03g031670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00056807g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.4|0.6|1|1|5|0|188; (*GB) gi|3283996|gb|AAC25423.1| (e_value=3e-131) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|O49717|CDPKF_ARATH (e_value=4e-114) Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1;; (*TAIR) AT4G21940.1 (e_value=3e-115) | Symbols: CPK15 | calcium-dependent protein kinase 15 | chr4:11640847-11643387 FORWARD LENGTH=554;; (*ITAG) Solyc03g031670.2.1 (e_value=1e-126) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00020178g0010.1 protein AED:0.01 eAED:0.01 QI:194|0.83|0.71|1|0.66|0.85|7|911|224; (*GB) gi|356505805|ref|XP_003521680.1| (e_value=7e-99) PREDICTED: uncharacterized protein LOC100527010 [Glycine max];; (*TAIR) AT3G60810.1 (e_value=8e-86) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 444 Blast hits to 444 proteins in 143 species: Archae - 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). | chr3:22470579-22471756 FORWARD LENGTH=214;; (*ITAG) Solyc01g091360.2.1 (e_value=4e-131) genomic_reference:SL2.40ch01 gene_region:76760306-76762718 transcript_region:SL2.40ch01:76760306..76762718+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00VP3_OSTTA); contains Interpro domain(s) IPR010865 Protein of unknown function DUF1499 "; NbS00020178g0001.1 protein AED:0.06 eAED:0.06 QI:7|1|1|1|1|1|11|443|614; (*GB) gi|225462092|ref|XP_002271499.1| (e_value=4e-130) PREDICTED: uncharacterized protein LOC100267010 [Vitis vinifera];; (*SWP) sp|Q93ZG9|FKB53_ARATH (e_value=4e-44) Peptidyl-prolyl cis-trans isomerase FKBP53 OS=Arabidopsis thaliana GN=FKBP53 PE=1 SV=1;; (*TAIR) AT4G25340.1 (e_value=3e-45) | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN 53 | chr4:12959657-12962632 REVERSE LENGTH=477;; (*ITAG) Solyc01g091340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76744237-76752129 transcript_region:SL2.40ch01:76744237..76752129+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q7VAT7_PROMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00020178g0011.1 protein AED:0.09 eAED:0.10 QI:242|0.90|0.91|1|0.72|0.83|12|172|698; (*GB) gi|359489412|ref|XP_002273349.2| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase 2 subunit KU80-like [Vitis vinifera];; (*SWP) sp|Q75IP6|KU80_ORYSJ (e_value=0.0) ATP-dependent DNA helicase 2 subunit KU80 OS=Oryza sativa subsp. japonica GN=KU80 PE=1 SV=1;; (*TAIR) AT1G48050.1 (e_value=0.0) | Symbols: KU80, ATKU80 | Ku80 family protein | chr1:17723498-17726859 FORWARD LENGTH=680;; (*ITAG) Solyc01g091350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76753032-76759212 transcript_region:SL2.40ch01:76753032..76759212- go_terms:GO:0003691 functional_description:"ATP-dependent DNA helicase 2 subunit KU80 (AHRD V1 **-* KU80_ARATH); contains Interpro domain(s) IPR016194 Spen Paralogue and Orthologue C-terminal-like "; GO:0003691 NbS00020989g0004.1 protein AED:0.14 eAED:0.14 QI:266|1|1|1|1|1|3|241|247; (*GB) gi|4584429|emb|CAB40742.1| (e_value=5e-178) aquaglyceroporin [Nicotiana tabacum];; (*SWP) sp|O82316|TIP41_ARATH (e_value=1e-121) Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1;; (*TAIR) AT2G25810.1 (e_value=1e-122) | Symbols: TIP4;1 | tonoplast intrinsic protein 4;1 | chr2:11012658-11013906 FORWARD LENGTH=249;; (*ITAG) Solyc08g066840.2.1 (e_value=6e-174) genomic_reference:SL2.40ch08 gene_region:52920998-52923265 transcript_region:SL2.40ch08:52920998..52923265- go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- O65860_PICAB); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00011705g0006.1 protein AED:0.24 eAED:0.29 QI:0|0.66|0.25|1|0.33|0.25|4|418|228; (*GB) gi|224080788|ref|XP_002306230.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27590.1 (e_value=3e-54) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11777768-11779777 REVERSE LENGTH=372;; (*ITAG) Solyc06g074380.2.1 (e_value=2e-74) genomic_reference:SL2.40ch06 gene_region:42391661-42395489 transcript_region:SL2.40ch06:42391661..42395489- functional_description:"Methyltransferase domain family (AHRD V1 ***- B5JXE3_9GAMM)"; NbS00036252g0022.1 protein AED:0.09 eAED:0.25 QI:0|0|0|0.66|0.5|0.66|3|0|377; (*GB) gi|359806246|ref|NP_001241212.1| (e_value=3e-138) uncharacterized protein LOC100809651 [Glycine max];; (*SWP) sp|Q9FVS1|FBK23_ARATH (e_value=3e-68) F-box/kelch-repeat protein At1g57790 OS=Arabidopsis thaliana GN=At1g57790 PE=2 SV=1;; (*TAIR) AT1G57790.1 (e_value=2e-69) | Symbols: | F-box family protein | chr1:21404578-21405636 REVERSE LENGTH=352;; (*ITAG) Solyc09g009870.2.1 (e_value=3e-121) genomic_reference:SL2.40ch09 gene_region:3356180-3359366 transcript_region:SL2.40ch09:3356180..3359366+ functional_description:"F-box protein family-like (AHRD V1 ***- Q6ZLE2_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00036252g0007.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|1|1|2|0|619; (*GB) gi|359482011|ref|XP_002276416.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460-like [Vitis vinifera];; (*SWP) sp|Q9CAY1|PP223_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1;; (*TAIR) AT3G11460.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3608250-3610121 FORWARD LENGTH=623;; (*ITAG) Solyc09g009950.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3409650-3411653 transcript_region:SL2.40ch09:3409650..3411653+ go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LAN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00036252g0024.1 protein AED:0.04 eAED:0.04 QI:67|1|1|1|0|0.33|3|146|106; (*GB) gi|388500732|gb|AFK38432.1| (e_value=4e-51) unknown [Lotus japonicus];; (*TAIR) AT4G18590.1 (e_value=2e-45) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:10236524-10236940 FORWARD LENGTH=106;; (*ITAG) Solyc09g009900.2.1 (e_value=5e-64) genomic_reference:SL2.40ch09 gene_region:3382755-3386531 transcript_region:SL2.40ch09:3382755..3386531- go_terms:GO:0005515 functional_description:"Pollen-specific protein - like (AHRD V1 ***- O49527_ARATH); contains Interpro domain(s) IPR013970 Replication factor A protein 3 "; GO:0005515 NbS00036252g0028.1 protein AED:0.06 eAED:0.06 QI:341|0.66|1|1|0.66|0.75|4|298|455; (*GB) gi|3695059|gb|AAC62624.1| (e_value=1e-130) rac GTPase activating protein 1 [Lotus japonicus];; (*TAIR) AT5G22400.1 (e_value=3e-118) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466;; (*ITAG) Solyc09g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3418544-3423024 transcript_region:SL2.40ch09:3418544..3423024- go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00036252g0004.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|76 NbS00036252g0033.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.88|1|0.75|0.88|9|410|588; (*GB) gi|225440860|ref|XP_002276489.1| (e_value=0.0) PREDICTED: ABC transporter B family member 29, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LZB8|AB29B_ARATH (e_value=0.0) ABC transporter B family member 29, chloroplastic OS=Arabidopsis thaliana GN=ABCB29 PE=1 SV=1;; (*TAIR) AT5G03910.1 (e_value=0.0) | Symbols: ATATH12, ATH12 | ABC2 homolog 12 | chr5:1054313-1057105 REVERSE LENGTH=634;; (*ITAG) Solyc09g009910.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3386287-3395367 transcript_region:SL2.40ch09:3386287..3395367- go_terms:GO:0005381 functional_description:"Lipid A ABC transporter permease/ATP-binding protein (AHRD V1 **** D3L345_9BACT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0005381 NbS00036252g0035.1 protein AED:0.23 eAED:0.23 QI:142|0.92|0.92|1|0.84|0.85|14|346|515; (*GB) gi|224138482|ref|XP_002322825.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P37107|SR54C_ARATH (e_value=0.0) Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1;; (*TAIR) AT5G03940.1 (e_value=0.0) | Symbols: FFC, 54CP, CPSRP54, SRP54CP | chloroplast signal recognition particle 54 kDa subunit | chr5:1060265-1063257 REVERSE LENGTH=564;; (*ITAG) Solyc09g009940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3401811-3408955 transcript_region:SL2.40ch09:3401811..3408955- go_terms:GO:0003924 functional_description:"Signal recognition particle protein (AHRD V1 ***- B0CBK0_ACAM1); contains Interpro domain(s) IPR004780 Signal recognition particle, SRP "; GO:0003924 NbS00036252g0034.1 protein AED:0.18 eAED:0.25 QI:0|0|0|1|0|0.2|5|0|334; (*TAIR) AT4G14103.1 (e_value=6e-11) | Symbols: | F-box/RNI-like superfamily protein | chr4:8126948-8128305 FORWARD LENGTH=381;; (*ITAG) Solyc09g009920.1.1 (e_value=4e-116) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3397388-3398827 transcript_region:SL2.40ch09:3397388..3398827- functional_description:"F-box family protein (AHRD V1 ***- D7MLR5_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00036252g0023.1 protein AED:0.29 eAED:0.29 QI:690|1|1|1|0.77|0.7|10|245|485; (*GB) gi|225464938|ref|XP_002275366.1| (e_value=0.0) PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Vitis vinifera];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=6e-40) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT3G52660.2 (e_value=1e-156) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471;; (*ITAG) Solyc09g009890.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3372431-3376679 transcript_region:SL2.40ch09:3372431..3376679- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- B8N3I8_ASPFN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00036252g0036.1 protein AED:0.33 eAED:0.35 QI:3|0.33|0.4|1|0.33|0.6|10|413|301; (*GB) gi|359482492|ref|XP_002274180.2| (e_value=4e-114) PREDICTED: uncharacterized protein LOC100241207 [Vitis vinifera];; (*TAIR) AT3G11470.1 (e_value=4e-85) | Symbols: | 4'-phosphopantetheinyl transferase superfamily | chr3:3610261-3612094 REVERSE LENGTH=300;; (*ITAG) Solyc09g009960.2.1 (e_value=1e-160) genomic_reference:SL2.40ch09 gene_region:3412363-3416452 transcript_region:SL2.40ch09:3412363..3416452- go_terms:GO:0009059 functional_description:"4&apos-phosphopantetheinyl transferase family protein (AHRD V1 ***- D7LAN4_ARALY); contains Interpro domain(s) IPR008278 4'-phosphopantetheinyl transferase "; GO:0009059 NbS00036252g0030.1 protein AED:0.06 eAED:0.16 QI:0|0|0|1|0|0|3|0|417; (*ITAG) Solyc09g009920.1.1 (e_value=1e-144) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3397388-3398827 transcript_region:SL2.40ch09:3397388..3398827- functional_description:"F-box family protein (AHRD V1 ***- D7MLR5_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00028744g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.55|0.6|0.9|0.33|0.7|10|0|271; (*GB) gi|225464479|ref|XP_002271673.1| (e_value=6e-136) PREDICTED: uncharacterized protein LOC100247339 [Vitis vinifera];; (*TAIR) AT5G23870.2 (e_value=2e-116) | Symbols: | Pectinacetylesterase family protein | chr5:8045958-8049999 REVERSE LENGTH=436;; (*ITAG) Solyc03g025600.2.1 (e_value=6e-148) genomic_reference:SL2.40ch03 gene_region:7376053-7384703 transcript_region:SL2.40ch03:7376053..7384703+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbC25671424g0003.1 protein AED:0.38 eAED:0.39 QI:0|1|0.33|1|1|0.66|3|0|69; (*GB) gi|27923880|sp|P59234|YIPL_SOLTU (e_value=7e-44) Protein yippee-like;; (*SWP) sp|P59234|YIPL_SOLTU (e_value=2e-45) Protein yippee-like OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G40110.1 (e_value=4e-38) | Symbols: | Yippee family putative zinc-binding protein | chr2:16748159-16749357 FORWARD LENGTH=130;; (*ITAG) Solyc03g096080.2.1 (e_value=5e-47) genomic_reference:SL2.40ch03 gene_region:51376491-51382146 transcript_region:SL2.40ch03:51376491..51382146+ go_terms:GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0008270 NbS00000139g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|646; (*GB) gi|255547197|ref|XP_002514656.1| (e_value=1e-105) hypothetical protein RCOM_1469830 [Ricinus communis];; (*TAIR) AT5G61040.1 (e_value=1e-68) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24562431-24564395 REVERSE LENGTH=590;; (*ITAG) Solyc03g115100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58960421-58964830 transcript_region:SL2.40ch03:58960421..58964830- functional_description:"Unknown Protein (AHRD V1)"; NbS00000139g0008.1 protein AED:0.13 eAED:0.13 QI:49|1|0.85|1|0.66|0.71|7|140|521; (*GB) gi|255547207|ref|XP_002514661.1| (e_value=3e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G61120.1 (e_value=2e-19) | Symbols: | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:24582486-24585030 REVERSE LENGTH=426;; (*ITAG) Solyc03g115160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59007750-59010706 transcript_region:SL2.40ch03:59007750..59010706- functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q2QSD0_ORYSJ)"; NbS00000139g0007.1 protein AED:0.24 eAED:0.24 QI:362|1|0.88|1|1|1|9|573|324; (*GB) gi|543867|sp|P26360.2|ATPG3_IPOBA (e_value=0.0) RecName: Full=ATP synthase subunit gamma, mitochondrial; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P26360|ATPG3_IPOBA (e_value=0.0) ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2;; (*TAIR) AT2G33040.1 (e_value=0.0) | Symbols: ATP3 | gamma subunit of Mt ATP synthase | chr2:14018978-14021047 REVERSE LENGTH=325;; (*ITAG) Solyc03g115110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58968179-58972603 transcript_region:SL2.40ch03:58968179..58972603- go_terms:GO:0005515 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B9SZS3_RICCO); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0005515 NbS00017698g0005.1 protein AED:0.21 eAED:0.23 QI:0|0.2|0|0.66|1|1|6|0|416; (*GB) gi|324331817|gb|ADY38689.1| (e_value=0.0) actin [Camellia sinensis];; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00017698g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.77|0.8|10|683|335; (*GB) gi|224109522|ref|XP_002315224.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y673|ALG5_HUMAN (e_value=9e-87) Dolichyl-phosphate beta-glucosyltransferase OS=Homo sapiens GN=ALG5 PE=1 SV=1;; (*TAIR) AT2G39630.1 (e_value=6e-176) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:16522008-16524561 REVERSE LENGTH=336;; (*ITAG) Solyc05g054460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63531889-63536711 transcript_region:SL2.40ch05:63531889..63536711+ go_terms:GO:0004581,GO:0004576 functional_description:"Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (AHRD V1 **** ARNC_SERP5); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0004581,GO:0004576 NbS00060536g0002.1 protein AED:0.25 eAED:0.27 QI:0|0|0|0.75|0|0.25|4|0|247; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-33) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc10g047840.1.1 (e_value=6e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00023715g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.88|1|1|0.88|1|10|398|285; (*GB) gi|255581073|ref|XP_002531352.1| (e_value=0.0) ribosomal RNA methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9UET6|RRMJ1_HUMAN (e_value=2e-92) Putative ribosomal RNA methyltransferase 1 OS=Homo sapiens GN=FTSJ1 PE=1 SV=2;; (*TAIR) AT5G01230.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:92789-95380 REVERSE LENGTH=309;; (*ITAG) Solyc09g014320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5836883-5845280 transcript_region:SL2.40ch09:5836883..5845280- go_terms:GO:0008650 functional_description:"Ribosomal RNA large subunit methyltransferase J family protein (AHRD V1 **** A7APJ4_BABBO); contains Interpro domain(s) IPR015507 Ribosomal RNA methyltransferase J "; GO:0008650 NbS00005257g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|52 NbS00030404g0006.1 protein AED:0.03 eAED:0.03 QI:40|1|1|1|1|1|5|197|364; (*GB) gi|356576489|ref|XP_003556363.1| (e_value=4e-157) PREDICTED: uncharacterized protein LOC100796923 [Glycine max];; (*TAIR) AT1G04280.1 (e_value=3e-152) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1143643-1146541 REVERSE LENGTH=534;; (*ITAG) Solyc06g053810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33165093-33169631 transcript_region:SL2.40ch06:33165093..33169631+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00029529g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|57014003|ref|YP_173474.1| (e_value=5e-39) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=1e-21) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc06g065210.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:37049546-37053685 transcript_region:SL2.40ch06:37049546..37053685- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00001440g0006.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|193527448|gb|ACF19789.1| (e_value=3e-19) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00001440g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|292; (*GB) gi|193527448|gb|ACF19789.1| (e_value=3e-13) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=4e-45) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00001440g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|393; (*GB) gi|193527448|gb|ACF19789.1| (e_value=4e-17) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=3e-50) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00061512g0004.1 protein AED:0.09 eAED:0.09 QI:163|1|0.5|1|0|0|2|0|33 NbS00061512g0001.1 protein AED:0.30 eAED:0.30 QI:0|1|0.6|1|1|1|5|0|230; (*GB) gi|225465191|ref|XP_002263798.1| (e_value=8e-110) PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera];; (*SWP) sp|Q8GWR3|QKIL5_ARATH (e_value=2e-87) KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1;; (*TAIR) AT1G09660.1 (e_value=2e-88) | Symbols: | RNA-binding KH domain-containing protein | chr1:3128032-3130791 REVERSE LENGTH=298;; (*ITAG) Solyc01g103410.2.1 (e_value=2e-150) genomic_reference:SL2.40ch01 gene_region:83770913-83781702 transcript_region:SL2.40ch01:83770913..83781702- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6T8Q7_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00061512g0002.1 protein AED:0.46 eAED:0.77 QI:0|0|0|0.85|1|1|7|0|137 NbS00024914g0002.1 protein AED:0.10 eAED:0.10 QI:39|1|1|1|0.87|0.77|9|113|673; (*GB) gi|378747581|gb|AFC36404.1| (e_value=0.0) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00024914g0008.1 protein AED:0.25 eAED:0.30 QI:0|0.62|0.44|1|0.62|0.77|9|0|404; (*GB) gi|378747581|gb|AFC36404.1| (e_value=0.0) ABCG1 [Petunia x hybrida];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=3e-113) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=2e-114) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00024914g0009.1 protein AED:0.44 eAED:0.45 QI:0|0|0|1|0|0|2|0|112; (*GB) gi|378747581|gb|AFC36404.1| (e_value=8e-26) ABCG1 [Petunia x hybrida];; (*ITAG) Solyc01g105450.2.1 (e_value=4e-26) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00024914g0101.1 protein AED:0.06 eAED:0.06 QI:251|1|0.5|1|0|0|2|0|98 NbS00024914g0110.1 protein AED:0.06 eAED:0.07 QI:0|1|0.83|1|1|1|6|309|591 NbS00024914g0113.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|154 NbS00019114g0002.1 protein AED:0.39 eAED:0.44 QI:0|0|0|1|1|1|2|0|80; (*ITAG) Solyc03g119320.1.1 (e_value=3e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:62016429-62017130 transcript_region:SL2.40ch03:62016429..62017130- functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00019114g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|357452371|ref|XP_003596462.1| (e_value=2e-17) hypothetical protein MTR_2g077840 [Medicago truncatula];; (*TAIR) AT2G07820.1 (e_value=3e-16) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:3457213-3457479 REVERSE LENGTH=88; NbS00016666g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|255537543|ref|XP_002509838.1| (e_value=1e-59) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9SUS5|RHA1B_ARATH (e_value=2e-22) E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1;; (*TAIR) AT3G61460.1 (e_value=3e-52) | Symbols: BRH1 | brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170;; (*ITAG) Solyc08g081370.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61596346-61596843 transcript_region:SL2.40ch08:61596346..61596843- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q30D22_PONTR); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00038957g0004.1 protein AED:0.31 eAED:0.31 QI:139|1|0.77|1|0.87|0.88|9|0|320; (*GB) gi|255542730|ref|XP_002512428.1| (e_value=4e-173) ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis];; (*SWP) sp|Q8L770|CLPR3_ARATH (e_value=6e-165) ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1;; (*TAIR) AT1G09130.2 (e_value=5e-166) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2940063-2942217 REVERSE LENGTH=330;; (*ITAG) Solyc01g099690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81616423-81624919 transcript_region:SL2.40ch01:81616423..81624919+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- B9RFA9_RICCO); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00023439g0002.1 protein AED:0.23 eAED:0.23 QI:251|0.75|0.61|1|0.91|0.84|13|27|379; (*GB) gi|506534|emb|CAA50374.1| (e_value=2e-153) protein kinase [Nicotiana tabacum];; (*SWP) sp|Q6BLJ9|CBK1_DEBHA (e_value=4e-53) Serine/threonine-protein kinase CBK1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CBK1 PE=3 SV=2;; (*TAIR) AT4G14350.2 (e_value=4e-116) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:8256449-8259934 REVERSE LENGTH=551;; (*ITAG) Solyc06g008330.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:2204254-2211375 transcript_region:SL2.40ch06:2204254..2211375- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00009960g0011.1 protein AED:0.13 eAED:0.13 QI:225|0.57|0.62|0.87|1|1|8|0|665; (*GB) gi|225429224|ref|XP_002263530.1| (e_value=0.0) PREDICTED: oligopeptide transporter 4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FME8|OPT4_ARATH (e_value=0.0) Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1;; (*TAIR) AT5G64410.1 (e_value=0.0) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc04g076780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59248010-59253947 transcript_region:SL2.40ch04:59248010..59253947- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00009960g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|259; (*ITAG) Solyc10g047880.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009960g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.33|1|1|3|0|92; (*GB) gi|302824418|ref|XP_002993852.1| (e_value=7e-25) hypothetical protein SELMODRAFT_137672 [Selaginella moellendorffii];; (*SWP) sp|Q9FME8|OPT4_ARATH (e_value=7e-24) Oligopeptide transporter 4 OS=Arabidopsis thaliana GN=OPT4 PE=2 SV=1;; (*TAIR) AT5G64410.1 (e_value=6e-25) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc04g076760.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59239550-59242872 transcript_region:SL2.40ch04:59239550..59242872+ go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00015397g0001.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|293; (*GB) gi|225434443|ref|XP_002273069.1| (e_value=1e-106) PREDICTED: N-alpha-acetyltransferase 25, NatB auxiliary subunit [Vitis vinifera];; (*TAIR) AT5G58450.1 (e_value=1e-68) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057920.2.1 (e_value=1e-147) genomic_reference:SL2.40ch09 gene_region:47851951-47865894 transcript_region:SL2.40ch09:47851951..47865894+ functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 *--- NAA25_RAT); contains Interpro domain(s) IPR019183 N-acetyltransferase B complex, non-catalytic subunit "; NbS00029657g0009.1 protein AED:0.00 eAED:0.00 QI:56|1|1|1|1|1|2|184|88; (*GB) gi|225458776|ref|XP_002285141.1| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100257455 [Vitis vinifera];; (*SWP) sp|Q948Z4|SNAK1_SOLTU (e_value=4e-36) Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1;; (*TAIR) AT5G59845.1 (e_value=3e-36) | Symbols: | Gibberellin-regulated family protein | chr5:24111443-24111808 FORWARD LENGTH=89;; (*ITAG) Solyc12g042520.1.1 (e_value=1e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43316208-43316606 transcript_region:SL2.40ch12:43316208..43316606+ functional_description:"Gibberellin-regulated family protein (AHRD V1 **-- D7MT35_ARALY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00029657g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|0.33|3|0|311; (*GB) gi|58257682|dbj|BAC53935.2| (e_value=2e-163) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|A2WW87|GAM1_ORYSI (e_value=1e-36) Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G60460.1 (e_value=3e-71) | Symbols: DUO1 | myb-like HTH transcriptional regulator family protein | chr3:22342429-22343491 REVERSE LENGTH=297;; (*ITAG) Solyc10g019260.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:12672810-12674303 transcript_region:SL2.40ch10:12672810..12674303+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB family transcription factor-like (AHRD V1 *--- Q9LHS6_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00058027g0001.1 protein AED:0.09 eAED:0.20 QI:0|0|0|1|0|0|2|0|198 NbS00010078g0005.1 protein AED:0.01 eAED:0.01 QI:166|1|1|1|1|1|3|449|265; (*GB) gi|3790355|dbj|BAA33971.1| (e_value=0.0) chitinase 134 [Nicotiana tabacum];; (*SWP) sp|Q05537|CHID_SOLLC (e_value=1e-156) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1;; (*TAIR) AT3G12500.1 (e_value=2e-125) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g061770.2.1 (e_value=1e-169) genomic_reference:SL2.40ch02 gene_region:27867963-27869757 transcript_region:SL2.40ch02:27867963..27869757+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00005923g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|225450557|ref|XP_002277523.1| (e_value=6e-56) PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera];; (*TAIR) AT5G48350.1 (e_value=7e-15) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:19593566-19594165 FORWARD LENGTH=199;; (*ITAG) Solyc01g100680.1.1 (e_value=3e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82418305-82418913 transcript_region:SL2.40ch01:82418305..82418913+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00005923g0002.1 protein AED:0.20 eAED:0.21 QI:317|0.66|0.75|1|0|0|4|458|200; (*GB) gi|296089791|emb|CBI39610.3| (e_value=3e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g100690.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:82421716-82425412 transcript_region:SL2.40ch01:82421716..82425412+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005923g0006.1 protein AED:0.15 eAED:0.15 QI:428|0.66|0.75|0.75|0.33|0.25|4|0|103; (*GB) gi|225450553|ref|XP_002281765.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100257949 [Vitis vinifera];; (*TAIR) AT5G26800.1 (e_value=5e-17) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9425224-9426485 FORWARD LENGTH=112;; (*ITAG) Solyc01g100700.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:82425684-82429183 transcript_region:SL2.40ch01:82425684..82429183- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019083 IGR protein motif "; NbS00033627g0001.1 protein AED:0.01 eAED:0.01 QI:63|0|0.5|1|0|0.5|2|0|382; (*GB) gi|225447791|ref|XP_002266605.1| (e_value=4e-154) PREDICTED: uncharacterized protein LOC100252142 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=1e-107) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc01g104660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84847443-84849446 transcript_region:SL2.40ch01:84847443..84849446- functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00033627g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.6|0.8|0.5|0.6|5|435|284; (*GB) gi|225447787|ref|XP_002266344.1| (e_value=4e-38) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5-like [Vitis vinifera];; (*TAIR) AT5G44080.1 (e_value=9e-18) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:17738787-17739734 REVERSE LENGTH=315;; (*ITAG) Solyc01g104650.2.1 (e_value=4e-73) genomic_reference:SL2.40ch01 gene_region:84842345-84845885 transcript_region:SL2.40ch01:84842345..84845885+ go_terms:GO:0016563,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **** Q53UC6_WHEAT); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0010843 NbS00046305g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|225435138|ref|XP_002281676.1| (e_value=7e-82) PREDICTED: chitinase 2-like [Vitis vinifera];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=2e-63) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072830.1.1 (e_value=6e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53108033-53108953 transcript_region:SL2.40ch11:53108033..53108953+ go_terms:GO:0005975 functional_description:"Chitinase 2 (AHRD V1 ***- B6U7J7_MAIZE); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00001451g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|225429169|ref|XP_002271290.1| (e_value=3e-69) PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=8e-53) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=6e-54) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=4e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00001451g0010.1 protein AED:0.00 eAED:0.00 QI:103|1|1|1|1|1|2|83|180; (*GB) gi|6855476|dbj|BAA90481.1| (e_value=6e-71) phytocyanin-related protein [Ipomoea nil];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-45) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT4G31840.1 (e_value=5e-50) | Symbols: ENODL15, AtENODL15 | early nodulin-like protein 15 | chr4:15401798-15402426 FORWARD LENGTH=177;; (*ITAG) Solyc08g006790.2.1 (e_value=1e-88) genomic_reference:SL2.40ch08 gene_region:1346646-1348052 transcript_region:SL2.40ch08:1346646..1348052- go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00001451g0011.1 protein AED:0.00 eAED:0.00 QI:99|1|1|1|1|1|2|66|180; (*GB) gi|6855476|dbj|BAA90481.1| (e_value=1e-72) phytocyanin-related protein [Ipomoea nil];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=3e-44) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT4G31840.1 (e_value=2e-50) | Symbols: ENODL15, AtENODL15 | early nodulin-like protein 15 | chr4:15401798-15402426 FORWARD LENGTH=177;; (*ITAG) Solyc08g006790.2.1 (e_value=2e-90) genomic_reference:SL2.40ch08 gene_region:1346646-1348052 transcript_region:SL2.40ch08:1346646..1348052- go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00002586g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=2e-88) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-63) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=9e-65) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=6e-90) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00002586g0010.1 protein AED:0.19 eAED:0.19 QI:72|0.66|0.75|1|0.33|0.25|4|0|427; (*GB) gi|224142389|ref|XP_002324541.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G46220.1 (e_value=7e-158) | Symbols: | Protein of unknown function (DUF616) | chr5:18738827-18741964 FORWARD LENGTH=462;; (*ITAG) Solyc08g016620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:7981559-7984912 transcript_region:SL2.40ch08:7981559..7984912- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00002586g0009.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|85 NbS00041473g0010.1 protein AED:0.25 eAED:0.25 QI:200|0.75|0.66|1|0.87|0.88|9|126|295; (*GB) gi|225431301|ref|XP_002276296.1| (e_value=3e-85) PREDICTED: thioredoxin domain-containing protein 9 [Vitis vinifera];; (*SWP) sp|Q71A37|PHLP3_DICDI (e_value=5e-29) Phosducin-like protein 3 OS=Dictyostelium discoideum GN=phlp3 PE=2 SV=1;; (*TAIR) AT5G66410.1 (e_value=6e-81) | Symbols: PLP3b | phosducin-like protein 3 homolog | chr5:26519909-26521459 FORWARD LENGTH=230;; (*ITAG) Solyc02g062540.2.1 (e_value=6e-90) genomic_reference:SL2.40ch02 gene_region:28824062-28828907 transcript_region:SL2.40ch02:28824062..28828907- go_terms:GO:0048487 functional_description:"Thioredoxin domain containing 9 (AHRD V1 *--- Q5M8C7_RAT); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00041473g0007.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|4|0|162; (*GB) gi|154311853|ref|XP_001555255.1| (e_value=1e-34) conserved hypothetical protein [Botryotinia fuckeliana B05.10];; (*SWP) sp|O04450|TCPE_ARATH (e_value=1e-23) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.2 (e_value=6e-25) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8687660 REVERSE LENGTH=459;; (*ITAG) Solyc05g013990.2.1 (e_value=1e-27) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00041473g0009.1 protein AED:0.88 eAED:0.90 QI:0|0|0|0.33|1|1|3|0|134 NbS00041473g0014.1 protein AED:0.44 eAED:0.54 QI:35|0|0.5|1|0|0|4|0|201; (*GB) gi|255564577|ref|XP_002523284.1| (e_value=3e-35) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G43190.1 (e_value=2e-17) | Symbols: | ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=296;; (*ITAG) Solyc09g007370.2.1 (e_value=8e-70) genomic_reference:SL2.40ch09 gene_region:965176-969869 transcript_region:SL2.40ch09:965176..969869- go_terms:GO:0005655,GO:0030677 functional_description:"Ribonuclease P protein subunit p29 (AHRD V1 *-*- C1BL44_OSMMO); contains Interpro domain(s) IPR016848 Ribonuclease P/MRP, p29 subunit, eukaryotic "; GO:0005655,GO:0030677 NbS00039872g0001.1 protein AED:0.35 eAED:0.39 QI:0|1|0.33|1|1|1|3|0|140; (*GB) gi|225461564|ref|XP_002282834.1| (e_value=4e-50) PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera];; (*TAIR) AT3G15110.1 (e_value=6e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:5084394-5085823 REVERSE LENGTH=266;; (*ITAG) Solyc10g007120.2.1 (e_value=3e-76) genomic_reference:SL2.40ch10 gene_region:1522518-1524789 transcript_region:SL2.40ch10:1522518..1524789+ functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 *-*- Q9LIM4_ARATH)"; NbS00039872g0011.1 protein AED:0.27 eAED:0.27 QI:150|0.9|0.72|0.90|0.8|0.90|11|0|598; (*GB) gi|302142941|emb|CBI20236.3| (e_value=3e-136) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G18380.1 (e_value=1e-122) | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=348;; (*ITAG) Solyc10g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1526435-1535042 transcript_region:SL2.40ch10:1526435..1535042- go_terms:GO:0006355 functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 *-*- Q0DC52_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00039872g0010.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|2|0|158; (*GB) gi|225461564|ref|XP_002282834.1| (e_value=8e-33) PREDICTED: uncharacterized protein LOC100267434 [Vitis vinifera];; (*TAIR) AT3G15110.1 (e_value=6e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:5084394-5085823 REVERSE LENGTH=266;; (*ITAG) Solyc10g007120.2.1 (e_value=3e-76) genomic_reference:SL2.40ch10 gene_region:1522518-1524789 transcript_region:SL2.40ch10:1522518..1524789+ functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 *-*- Q9LIM4_ARATH)"; NbS00059651g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|0|0.5|2|0|241; (*GB) gi|255563723|ref|XP_002522863.1| (e_value=3e-61) Early nodulin 55-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-33) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT3G20570.1 (e_value=2e-46) | Symbols: ENODL9, AtENODL9 | early nodulin-like protein 9 | chr3:7186754-7187453 REVERSE LENGTH=203;; (*ITAG) Solyc07g064240.2.1 (e_value=2e-88) genomic_reference:SL2.40ch07 gene_region:63687022-63688523 transcript_region:SL2.40ch07:63687022..63688523+ go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR14_SOLPE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00011404g0005.1 protein AED:0.17 eAED:0.17 QI:169|1|0.8|1|0.75|0.6|5|0|567; (*GB) gi|147858202|emb|CAN83927.1| (e_value=0.0) hypothetical protein VITISV_031037 [Vitis vinifera];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc10g024490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:14779518-14782394 transcript_region:SL2.40ch10:14779518..14782394- go_terms:GO:0042936,GO:0015112 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936,GO:0015112 NbS00009713g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.6|1|0.5|0.6|5|229|264; (*GB) gi|225459718|ref|XP_002284727.1| (e_value=5e-107) PREDICTED: uncharacterized protein LOC100252353 [Vitis vinifera];; (*TAIR) AT1G44000.1 (e_value=1e-86) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11911.1); Has 216 Blast hits to 212 proteins in 76 species: Archae - 0; Bacteria - 96; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:16708201-16709521 REVERSE LENGTH=260;; (*ITAG) Solyc04g063240.2.1 (e_value=2e-160) genomic_reference:SL2.40ch04 gene_region:54500968-54505277 transcript_region:SL2.40ch04:54500968..54505277+ functional_description:"Senescence-inducible chloroplast stay-green protein 1 (AHRD V1 **-- B6SRJ2_MAIZE)"; NbS00054532g0007.1 protein AED:0.13 eAED:0.13 QI:1322|1|1|1|0.5|0.66|3|448|305; (*GB) gi|37572443|dbj|BAC98491.1| (e_value=5e-142) AG-motif binding protein-1 [Nicotiana tabacum];; (*SWP) sp|O82632|GATA9_ARATH (e_value=7e-40) GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2 SV=1;; (*TAIR) AT4G32890.1 (e_value=6e-41) | Symbols: GATA9 | GATA transcription factor 9 | chr4:15875598-15876615 FORWARD LENGTH=308;; (*ITAG) Solyc04g015360.2.1 (e_value=2e-144) genomic_reference:SL2.40ch04 gene_region:5562886-5565490 transcript_region:SL2.40ch04:5562886..5565490- go_terms:GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00054532g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.82|0.77|1|0.94|0.88|18|339|824; (*GB) gi|58618123|gb|AAW80628.1| (e_value=0.0) phosphoinositide 3-kinase [Nicotiana tabacum];; (*SWP) sp|P42347|PI3K1_SOYBN (e_value=0.0) Phosphatidylinositol 3-kinase, root isoform OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G60490.1 (e_value=0.0) | Symbols: ATVPS34, VPS34, PI3K | vacuolar protein sorting 34 | chr1:22285792-22290190 REVERSE LENGTH=814;; (*ITAG) Solyc04g015350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5548786-5561202 transcript_region:SL2.40ch04:5548786..5561202+ go_terms:GO:0016303 functional_description:"Phosphatidylinositol 3-kinase (AHRD V1 **** Q8GUA6_MEDTR); contains Interpro domain(s) IPR008290 Phosphatidylinositol 3-kinase, Vps34 type "; GO:0016303 NbS00039789g0004.1 protein AED:0.00 eAED:0.00 QI:94|1|1|1|1|1|2|275|84 NbS00032876g0004.1 protein AED:0.33 eAED:0.34 QI:147|0.83|0.84|1|0.58|0.61|13|21|329; (*GB) gi|225440874|ref|XP_002282520.1| (e_value=2e-130) PREDICTED: uncharacterized protein LOC100261348 [Vitis vinifera];; (*TAIR) AT5G03880.1 (e_value=1e-112) | Symbols: | Thioredoxin family protein | chr5:1038674-1041453 REVERSE LENGTH=339;; (*ITAG) Solyc09g009820.2.1 (e_value=7e-139) genomic_reference:SL2.40ch09 gene_region:3308057-3320608 transcript_region:SL2.40ch09:3308057..3320608+ go_terms:GO:0045454 functional_description:"Glutathione S-transferase domain protein (AHRD V1 *--- C6RLV9_ACIRA); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0045454 NbS00024459g0004.1 protein AED:0.34 eAED:0.34 QI:245|1|1|1|1|1|5|366|238; (*GB) gi|225443853|ref|XP_002276026.1| (e_value=2e-125) PREDICTED: GDSL esterase/lipase At5g45920 isoform 1 [Vitis vinifera];; (*SWP) sp|Q6NMR9|GDL84_ARATH (e_value=4e-122) GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1;; (*TAIR) AT5G45920.1 (e_value=3e-123) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:18622822-18624677 FORWARD LENGTH=241;; (*ITAG) Solyc02g077220.2.1 (e_value=6e-151) genomic_reference:SL2.40ch02 gene_region:36794632-36799697 transcript_region:SL2.40ch02:36794632..36799697- go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6THH7_MAIZE); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00032396g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.61|1|0.66|0.69|13|1116|747; (*GB) gi|225447492|ref|XP_002267265.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245992 [Vitis vinifera];; (*TAIR) AT3G07660.1 (e_value=1e-84) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc07g045230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55658476-55669122 transcript_region:SL2.40ch07:55658476..55669122- functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 *--- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00034628g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|616; (*GB) gi|350535739|ref|NP_001234722.1| (e_value=0.0) LeTIR [Solanum lycopersicum];; (*SWP) sp|Q9LTX2|TIR1L_ARATH (e_value=0.0) Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1;; (*TAIR) AT5G49980.1 (e_value=0.0) | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334420-20336531 REVERSE LENGTH=619;; (*ITAG) Solyc04g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58453329-58456206 transcript_region:SL2.40ch04:58453329..58456206- functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00008298g0002.1 protein AED:0.31 eAED:0.31 QI:476|1|1|1|0.71|0.5|8|126|205; (*GB) gi|255547548|ref|XP_002514831.1| (e_value=4e-76) Aspartic proteinase Asp1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=2e-52) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=7e-62) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc05g055800.2.1 (e_value=3e-107) genomic_reference:SL2.40ch05 gene_region:64441581-64448715 transcript_region:SL2.40ch05:64441581..64448715- go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7KF83_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00008298g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|70; (*ITAG) Solyc06g011460.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00008298g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.25|0|0.6|1|1|5|0|165; (*GB) gi|242087433|ref|XP_002439549.1| (e_value=2e-28) hypothetical protein SORBIDRAFT_09g012290 [Sorghum bicolor];; (*TAIR) AT1G79790.2 (e_value=3e-22) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:30016987-30017904 REVERSE LENGTH=198;; (*ITAG) Solyc05g055820.2.1 (e_value=4e-38) genomic_reference:SL2.40ch05 gene_region:64451860-64453633 transcript_region:SL2.40ch05:64451860..64453633+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase (AHRD V1 ***- D6A5G5_9ACTO); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00008298g0015.1 protein AED:0.33 eAED:0.36 QI:0|0.5|0.6|1|0.5|0.6|5|468|450; (*GB) gi|224144954|ref|XP_002325473.1| (e_value=4e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=1e-138) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=1e-139) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc05g055790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64438039-64441321 transcript_region:SL2.40ch05:64438039..64441321+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- Q4L0F8_MEDSA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00008512g0025.1 protein AED:0.08 eAED:0.11 QI:76|0.6|0.33|1|0.6|0.83|6|0|734; (*GB) gi|255561423|ref|XP_002521722.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17550.1 (e_value=6e-108) | Symbols: | unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | chr2:7634495-7637212 REVERSE LENGTH=779;; (*ITAG) Solyc03g032110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8898732-8902636 transcript_region:SL2.40ch03:8898732..8902636- functional_description:"Unknown Protein (AHRD V1)"; NbS00008512g0019.1 protein AED:0.11 eAED:0.11 QI:146|0.85|0.75|1|0.85|0.75|8|1453|137; (*GB) gi|1052956|gb|AAC50019.1| (e_value=1e-47) high mobility group protein 2 HMG2 [Ipomoea nil];; (*SWP) sp|P40619|HMGL_IPONI (e_value=1e-48) HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1;; (*TAIR) AT1G20696.2 (e_value=4e-37) | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147;; (*ITAG) Solyc02g082700.2.1 (e_value=1e-46) genomic_reference:SL2.40ch02 gene_region:40932829-40934370 transcript_region:SL2.40ch02:40932829..40934370- go_terms:GO:0003682,GO:0030527 functional_description:"High mobility group protein (AHRD V1 **-- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003682,GO:0030527 NbS00008512g0023.1 protein AED:0.16 eAED:0.16 QI:183|1|1|1|0.85|1|8|627|550; (*GB) gi|255561391|ref|XP_002521706.1| (e_value=0.0) plant ubiquilin, putative [Ricinus communis];; (*SWP) sp|Q9NIF3|UBQL_DICDI (e_value=1e-54) Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1;; (*TAIR) AT2G17200.1 (e_value=2e-168) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc03g032160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8939357-8949528 transcript_region:SL2.40ch03:8939357..8949528- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00008512g0004.1 protein AED:0.14 eAED:0.14 QI:46|1|0.5|1|0|0.5|2|0|265; (*GB) gi|359476979|ref|XP_002280225.2| (e_value=1e-126) PREDICTED: epithelial splicing regulatory protein 2-like [Vitis vinifera];; (*SWP) sp|Q8K0G8|ESRP2_MOUSE (e_value=3e-29) Epithelial splicing regulatory protein 2 OS=Mus musculus GN=Esrp2 PE=2 SV=1;; (*TAIR) AT5G66010.1 (e_value=3e-96) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26399612-26400753 FORWARD LENGTH=255;; (*ITAG) Solyc00g007070.2.1 (e_value=3e-143) genomic_reference:SL2.40ch00 gene_region:6691363-6693677 transcript_region:SL2.40ch00:6691363..6693677- go_terms:GO:0017025,GO:0003729 functional_description:"Heterogeneous nuclear ribonucleoprotein H1 (AHRD V1 **-- Q8C2Q7_MOUSE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0017025,GO:0003729 NbS00008512g0026.1 protein AED:0.23 eAED:0.23 QI:296|0.8|0.66|1|0.8|1|6|285|395; (*GB) gi|255561407|ref|XP_002521714.1| (e_value=0.0) serine/threonine-protein kinase cx32, putative [Ricinus communis];; (*SWP) sp|P27450|CX32_ARATH (e_value=3e-146) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.1 (e_value=4e-153) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=414;; (*ITAG) Solyc03g032150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8933725-8938894 transcript_region:SL2.40ch03:8933725..8938894+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00019637g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=1e-21) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006170.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00019637g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.25|1|1|4|0|204; (*GB) gi|224069800|ref|XP_002326417.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=6e-39) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT5G03620.1 (e_value=6e-49) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:918738-921874 FORWARD LENGTH=766;; (*ITAG) Solyc09g009750.1.1 (e_value=4e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3234041-3240688 transcript_region:SL2.40ch09:3234041..3240688+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00032954g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.37|0.22|0.77|0.37|0.55|9|0|457; (*GB) gi|225425577|ref|XP_002266600.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=2e-110) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT5G14650.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:4724509-4726328 FORWARD LENGTH=435;; (*ITAG) Solyc07g015870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5629512-5634447 transcript_region:SL2.40ch07:5629512..5634447- go_terms:GO:0005975 functional_description:"Polygalacturonase 1 (AHRD V1 ***- C0SPH4_PRUPE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00032954g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|4|0|276; (*GB) gi|350535372|ref|NP_001234703.1| (e_value=0.0) peptide deformylase 1A, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q9FUZ0|DEF1A_SOLLC (e_value=0.0) Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum GN=PDF1A PE=2 SV=1;; (*TAIR) AT1G15390.1 (e_value=4e-112) | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A | chr1:5294653-5295625 FORWARD LENGTH=269;; (*ITAG) Solyc07g015860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:5626709-5629569 transcript_region:SL2.40ch07:5626709..5629569+ go_terms:GO:0042586 functional_description:"Peptide deformylase (AHRD V1 **** B9GKW9_POPTR); contains Interpro domain(s) IPR000181 Formylmethionine deformylase "; GO:0042586 NbS00032954g0014.1 protein AED:0.43 eAED:0.44 QI:0|0.5|0|1|0|0.33|3|0|118; (*GB) gi|60592662|dbj|BAD90927.1| (e_value=6e-45) phospholipase A2 [Nicotiana tabacum];; (*SWP) sp|Q8S8N6|PLA2A_ARATH (e_value=3e-32) Phospholipase A2-alpha OS=Arabidopsis thaliana GN=PLA2-ALPHA PE=1 SV=1;; (*TAIR) AT2G06925.1 (e_value=2e-33) | Symbols: ATSPLA2-ALPHA, PLA2-ALPHA | Phospholipase A2 family protein | chr2:2842475-2843212 REVERSE LENGTH=148;; (*ITAG) Solyc07g014730.2.1 (e_value=7e-42) genomic_reference:SL2.40ch07 gene_region:5197542-5201173 transcript_region:SL2.40ch07:5197542..5201173+ go_terms:GO:0004623 functional_description:"Phospholipase A2 (AHRD V1 **** Q5CCT8_TOBAC); contains Interpro domain(s) IPR016090 Phospholipase A2 "; GO:0004623 NbS00001256g0004.1 protein AED:0.01 eAED:0.01 QI:301|1|1|1|1|1|8|325|317; (*GB) gi|358248376|ref|NP_001240127.1| (e_value=3e-165) uncharacterized protein LOC100808796 [Glycine max];; (*SWP) sp|Q9ZPQ3|GEK1_ARATH (e_value=1e-160) D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2;; (*TAIR) AT2G03800.1 (e_value=9e-162) | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317;; (*ITAG) Solyc06g069390.2.1 (e_value=4e-164) genomic_reference:SL2.40ch06 gene_region:39540431-39546469 transcript_region:SL2.40ch06:39540431..39546469- go_terms:GO:0051499 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** DTDA_ARCFU); contains Interpro domain(s) IPR018033 Uncharacterized conserved protein UCP016210 "; GO:0051499 NbS00011874g0008.1 protein AED:0.07 eAED:0.07 QI:281|0.83|0.57|1|0.83|0.71|7|0|390; (*GB) gi|225435772|ref|XP_002285729.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267227 isoform 1 [Vitis vinifera];; (*TAIR) AT1G55360.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr1:20666526-20668502 REVERSE LENGTH=422;; (*ITAG) Solyc01g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:382300-385329 transcript_region:SL2.40ch01:382300..385329+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00011874g0009.1 protein AED:0.22 eAED:0.22 QI:188|1|1|1|0.86|0.87|16|495|402; (*GB) gi|1708402|sp|P50218.1|IDHC_TOBAC (e_value=0.0) RecName: Full=Isocitrate dehydrogenase [NADP]; Short=IDH; AltName: Full=IDP; AltName: Full=NADP(+)-specific ICDH; AltName: Full=Oxalosuccinate decarboxylase;; (*SWP) sp|P50218|IDHC_TOBAC (e_value=0.0) Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G65930.1 (e_value=0.0) | Symbols: cICDH | cytosolic NADP+-dependent isocitrate dehydrogenase | chr1:24539088-24541861 FORWARD LENGTH=410;; (*ITAG) Solyc01g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:394402-399248 transcript_region:SL2.40ch01:394402..399248+ go_terms:GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- D2D324_GOSHI); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0055114 NbS00037606g0003.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.33|0.66|1|1|3|43|125; (*ITAG) Solyc11g027870.1.1 (e_value=6e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:15646640-15654343 transcript_region:SL2.40ch11:15646640..15654343- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007512 Protein of unknown function DUF543 "; NbS00006001g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.25|0.2|1|0.25|0.2|5|0|829; (*GB) gi|255581111|ref|XP_002531370.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G28780.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc11g066140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48915034-48918418 transcript_region:SL2.40ch11:48915034..48918418+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016874g0008.1 protein AED:0.01 eAED:0.01 QI:182|1|1|1|0.5|0.33|3|169|154; (*GB) gi|225423730|ref|XP_002278252.1| (e_value=1e-90) PREDICTED: glycine cleavage system H protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q39732|GCSH_FLAAN (e_value=2e-71) Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1;; (*TAIR) AT2G35120.1 (e_value=7e-83) | Symbols: | Single hybrid motif superfamily protein | chr2:14805913-14807274 REVERSE LENGTH=156;; (*ITAG) Solyc02g068740.2.1 (e_value=3e-91) genomic_reference:SL2.40ch02 gene_region:33249523-33253471 transcript_region:SL2.40ch02:33249523..33253471- go_terms:GO:0019464,GO:0005960 functional_description:"Glycine cleavage system H protein 1 (AHRD V1 ***- B6UHJ7_MAIZE); contains Interpro domain(s) IPR017453 Glycine cleavage H-protein, subgroup "; GO:0019464,GO:0005960 NbS00016874g0001.1 protein AED:0.19 eAED:0.20 QI:489|0.5|0.66|1|0|0.66|3|144|131; (*GB) gi|224134394|ref|XP_002321809.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA16|P2A09_ARATH (e_value=3e-19) Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana GN=PP2A9 PE=2 SV=1;; (*TAIR) AT1G10155.1 (e_value=5e-22) | Symbols: ATPP2-A10, PP2-A10 | phloem protein 2-A10 | chr1:3327637-3328448 REVERSE LENGTH=184;; (*ITAG) Solyc02g031740.2.1 (e_value=2e-48) genomic_reference:SL2.40ch02 gene_region:17541404-17542497 transcript_region:SL2.40ch02:17541404..17542497+ go_terms:GO:0030246 functional_description:"phloem lectin (AHRD V1 ***- Q8L5A9_CUCSA)"; GO:0030246 NbS00005921g0013.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.85|1|1|1|7|284|608; (*GB) gi|297739526|emb|CBI29708.3| (e_value=3e-117) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q07442|BDF2_YEAST (e_value=2e-15) Bromodomain-containing factor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BDF2 PE=1 SV=1;; (*TAIR) AT1G58025.1 (e_value=2e-67) | Symbols: | DNA-binding bromodomain-containing protein | chr1:21458219-21461757 REVERSE LENGTH=572;; (*ITAG) Solyc01g103570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83902094-83910528 transcript_region:SL2.40ch01:83902094..83910528- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein-like (AHRD V1 *-** Q5VPG9_ORYSJ); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00005921g0001.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|226; (*ITAG) Solyc01g103550.1.1 (e_value=3e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83894425-83895360 transcript_region:SL2.40ch01:83894425..83895360- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRN3_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00005921g0006.1 protein AED:0.36 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|357444935|ref|XP_003592745.1| (e_value=2e-16) MADS-box transcription factor [Medicago truncatula];; (*TAIR) AT3G05860.2 (e_value=3e-16) | Symbols: | MADS-box transcription factor family protein | chr3:1751655-1752355 REVERSE LENGTH=207;; (*ITAG) Solyc01g103550.1.1 (e_value=7e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83894425-83895360 transcript_region:SL2.40ch01:83894425..83895360- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRN3_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00005921g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|224119990|ref|XP_002331110.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02430.1 (e_value=9e-57) | Symbols: | Protein of unknown function (DUF679) | chr3:499360-500019 FORWARD LENGTH=219;; (*ITAG) Solyc01g103580.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:83913684-83914709 transcript_region:SL2.40ch01:83913684..83914709+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00005921g0018.1 protein AED:0.20 eAED:0.23 QI:0|0.83|0.71|1|0.83|0.85|7|660|524; (*GB) gi|297739524|emb|CBI29706.3| (e_value=2e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0VCZ3|YTHD2_BOVIN (e_value=2e-58) YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1;; (*TAIR) AT1G09810.1 (e_value=7e-97) | Symbols: ECT11 | evolutionarily conserved C-terminal region 11 | chr1:3181138-3183354 REVERSE LENGTH=470;; (*ITAG) Solyc01g103540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83887917-83893923 transcript_region:SL2.40ch01:83887917..83893923+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *-*- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00005921g0017.1 protein AED:0.25 eAED:0.25 QI:79|1|1|1|0.77|0.9|10|482|402; (*GB) gi|225448126|ref|XP_002263416.1| (e_value=0.0) PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera];; (*SWP) sp|B5ZN21|TRUA_RHILW (e_value=3e-45) tRNA pseudouridine synthase A OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=truA PE=3 SV=1;; (*TAIR) AT1G09800.1 (e_value=2e-167) | Symbols: | Pseudouridine synthase family protein | chr1:3177121-3180336 REVERSE LENGTH=372;; (*ITAG) Solyc01g103560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83896521-83901778 transcript_region:SL2.40ch01:83896521..83901778+ go_terms:GO:0009451 functional_description:"tRNA pseudouridine synthase A (AHRD V1 ***- D6ZZF1_STAND); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009451 NbS00051702g0007.1 protein AED:0.31 eAED:0.31 QI:210|0.33|0.75|1|0.66|0.75|4|0|178; (*GB) gi|370988687|dbj|BAL43557.1| (e_value=3e-67) type-A response regulator [Petunia x hybrida];; (*SWP) sp|O80366|ARR9_ARATH (e_value=6e-38) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=4e-39) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc10g079700.1.1 (e_value=8e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60528398-60530156 transcript_region:SL2.40ch10:60528398..60530156+ go_terms:GO:0006355 functional_description:"Response regulator 6 (AHRD V1 ***- Q9FRY9_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00021083g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|0|1|2|0|125; (*GB) gi|313586591|gb|ADR71306.1| (e_value=3e-79) 50S ribosomal protein L20 [Hevea brasiliensis];; (*SWP) sp|B6IPJ8|RL20_RHOCS (e_value=5e-44) 50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1;; (*TAIR) AT1G16740.1 (e_value=1e-73) | Symbols: | Ribosomal protein L20 | chr1:5727773-5728950 FORWARD LENGTH=126;; (*ITAG) Solyc02g069840.2.1 (e_value=3e-88) genomic_reference:SL2.40ch02 gene_region:34246378-34250461 transcript_region:SL2.40ch02:34246378..34250461+ go_terms:GO:0003735 functional_description:"50S ribosomal protein L20 (AHRD V1 ***- B9GNB5_POPTR); contains Interpro domain(s) IPR005812 Ribosomal protein L20, bacterial-type "; GO:0003735 NbS00021083g0007.1 protein AED:0.31 eAED:0.31 QI:98|1|1|1|0.75|0.6|5|328|107; (*GB) gi|350535172|ref|NP_001234180.1| (e_value=2e-46) 40S ribosomal protein S25 [Solanum lycopersicum];; (*SWP) sp|P46301|RS25_SOLLC (e_value=4e-48) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1;; (*TAIR) AT4G34555.1 (e_value=5e-43) | Symbols: | Ribosomal protein S25 family protein | chr4:16504381-16505339 REVERSE LENGTH=108;; (*ITAG) Solyc10g052660.1.1 (e_value=3e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48687984-48689698 transcript_region:SL2.40ch10:48687984..48689698- go_terms:GO:0003735 functional_description:"40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE); contains Interpro domain(s) IPR004977 Ribosomal protein S25 "; GO:0003735 NbS00058979g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.53|0.84|0.66|0.76|13|0|481; (*GB) gi|297735464|emb|CBI17904.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54GS1|CL16A_DICDI (e_value=5e-65) Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943 PE=3 SV=1;; (*TAIR) AT3G28430.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:10657441-10662404 REVERSE LENGTH=837;; (*ITAG) Solyc07g018100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9172636-9186689 transcript_region:SL2.40ch07:9172636..9186689- functional_description:"GOP-1 (Fragment) (AHRD V1 *--- Q95UF8_CAEEL); contains Interpro domain(s) IPR019155 Protein of unknown function FPL "; NbS00002859g0002.1 protein AED:0.01 eAED:0.01 QI:4037|1|1|1|1|1|3|273|140; (*GB) gi|356512776|ref|XP_003525092.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100815419 [Glycine max];; (*TAIR) AT3G52860.1 (e_value=2e-23) | Symbols: | unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:19591998-19592741 REVERSE LENGTH=156;; (*ITAG) Solyc08g074670.2.1 (e_value=3e-56) genomic_reference:SL2.40ch08 gene_region:55991207-55993576 transcript_region:SL2.40ch08:55991207..55993576+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002859g0011.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|169; (*GB) gi|225427572|ref|XP_002268442.1| (e_value=2e-75) PREDICTED: ankyrin-2 [Vitis vinifera];; (*SWP) sp|Q02357|ANK1_MOUSE (e_value=1e-13) Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2;; (*TAIR) AT5G61230.1 (e_value=2e-71) | Symbols: | Ankyrin repeat family protein | chr5:24628254-24628778 FORWARD LENGTH=174;; (*ITAG) Solyc08g005910.2.1 (e_value=3e-99) genomic_reference:SL2.40ch08 gene_region:695142-697652 transcript_region:SL2.40ch08:695142..697652+ go_terms:GO:0008381 functional_description:"Ankyrin repeat domain protein (AHRD V1 *-*- C0R3F1_WOLWR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00002859g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|216; (*GB) gi|359474775|ref|XP_002266735.2| (e_value=4e-44) PREDICTED: trihelix transcription factor GT-3b-like [Vitis vinifera];; (*ITAG) Solyc08g005900.2.1 (e_value=1e-83) genomic_reference:SL2.40ch08 gene_region:686812-693281 transcript_region:SL2.40ch08:686812..693281- go_terms:GO:0003677 functional_description:"Zinc finger and SCAN domain containing 29 (Predicted) (AHRD V1 *--- A9X1B1_PAPAN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00002859g0014.1 protein AED:0.39 eAED:0.70 QI:0|0.33|0|0.75|0.33|0.75|4|0|132; (*GB) gi|359488195|ref|XP_002272597.2| (e_value=2e-14) PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera];; (*ITAG) Solyc03g118950.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:61759053-61760339 transcript_region:SL2.40ch03:61759053..61760339+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein 3 (AHRD V1 ***- D7LRB5_ARALY); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00036025g0004.1 protein AED:0.17 eAED:0.27 QI:0|0|0|1|1|1|2|0|203 NbS00036025g0002.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|87; (*ITAG) Solyc01g006050.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:729095-730484 transcript_region:SL2.40ch01:729095..730484- functional_description:"Plant viral-response family protein (AHRD V1 **-- B6SQA7_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00031783g0009.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0|1|0|0|3|0|289; (*GB) gi|356560751|ref|XP_003548651.1| (e_value=5e-109) PREDICTED: uncharacterized protein LOC100790149 [Glycine max];; (*TAIR) AT5G41460.1 (e_value=8e-97) | Symbols: | Protein of unknown function (DUF604) | chr5:16589724-16592197 REVERSE LENGTH=524;; (*ITAG) Solyc01g094990.2.1 (e_value=4e-139) genomic_reference:SL2.40ch01 gene_region:78133228-78136084 transcript_region:SL2.40ch01:78133228..78136084+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00031783g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0.5|0.33|3|0|169; (*GB) gi|255541672|ref|XP_002511900.1| (e_value=4e-33) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT1G01570.1 (e_value=3e-31) | Symbols: | Protein of unknown function (DUF604) | chr1:205176-207435 FORWARD LENGTH=478;; (*ITAG) Solyc01g094990.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:78133228-78136084 transcript_region:SL2.40ch01:78133228..78136084+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00031783g0007.1 protein AED:0.04 eAED:0.04 QI:74|1|1|1|1|1|4|684|252; (*GB) gi|297745341|emb|CBI40421.3| (e_value=8e-107) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G46100.1 (e_value=3e-96) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr2:18953326-18954467 FORWARD LENGTH=240;; (*ITAG) Solyc01g095000.2.1 (e_value=4e-140) genomic_reference:SL2.40ch01 gene_region:78136105-78137562 transcript_region:SL2.40ch01:78136105..78137562- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q019E6_OSTTA)"; NbS00014159g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.84|0.71|1|0.84|0.85|14|0|582; (*GB) gi|193290728|gb|ACF17672.1| (e_value=0.0) putative pyruvate dehydrogenase E3 subunit [Capsicum annuum];; (*SWP) sp|P72740|DLDH_SYNY3 (e_value=1e-172) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lpdA PE=1 SV=3;; (*TAIR) AT3G16950.2 (e_value=0.0) | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase 1 | chr3:5786508-5790383 REVERSE LENGTH=623;; (*ITAG) Solyc01g100360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82177485-82184781 transcript_region:SL2.40ch01:82177485..82184781- go_terms:GO:0005737,GO:0055114 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- B5LAW5_CAPAN); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005737,GO:0055114 NbS00044754g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|118481295|gb|ABK92591.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT5G51550.1 (e_value=2e-178) | Symbols: EXL3 | EXORDIUM like 3 | chr5:20939793-20940806 REVERSE LENGTH=337;; (*ITAG) Solyc03g083560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:47058250-47059299 transcript_region:SL2.40ch03:47058250..47059299+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP0_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00044754g0004.1 protein AED:0.39 eAED:0.40 QI:0|1|0|1|0|0.5|2|0|187; (*GB) gi|225455677|ref|XP_002264722.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100261162 [Vitis vinifera];; (*TAIR) AT5G51545.1 (e_value=9e-29) | Symbols: LPA2 | low psii accumulation2 | chr5:20936434-20937243 FORWARD LENGTH=185;; (*ITAG) Solyc03g083570.2.1 (e_value=4e-59) genomic_reference:SL2.40ch03 gene_region:47072182-47074974 transcript_region:SL2.40ch03:47072182..47074974- functional_description:"Unknown Protein (AHRD V1)"; NbS00059924g0006.1 protein AED:0.17 eAED:0.17 QI:474|0.5|0.33|1|0.5|0.66|3|85|230; (*GB) gi|352856148|gb|AEQ62798.1| (e_value=6e-127) methionine sulfoxide reducatase [Solanum melongena];; (*SWP) sp|P54153|MSRA_SOLLC (e_value=3e-127) Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1;; (*TAIR) AT5G61640.1 (e_value=1e-91) | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide reductase 1 | chr5:24775107-24776147 FORWARD LENGTH=202;; (*ITAG) Solyc03g111720.2.1 (e_value=2e-128) genomic_reference:SL2.40ch03 gene_region:56431489-56432545 transcript_region:SL2.40ch03:56431489..56432545+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D7E9W5_METEZ); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00059924g0005.1 protein AED:0.04 eAED:0.04 QI:355|1|1|1|0.75|0.6|5|197|361; (*GB) gi|172052260|gb|ACB70409.1| (e_value=0.0) cysteine protease [Nicotiana tabacum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=0.0) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=4e-171) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00048738g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|1|1|1|3|0|631; (*GB) gi|302143694|emb|CBI22555.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SUQ3|Y4374_ARATH (e_value=4e-172) Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1;; (*TAIR) AT4G23740.1 (e_value=3e-173) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:12367063-12369159 FORWARD LENGTH=638;; (*ITAG) Solyc08g081940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62017281-62021205 transcript_region:SL2.40ch08:62017281..62021205+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00048738g0003.1 protein AED:0.44 eAED:0.54 QI:0|0|0|1|1|1|3|0|113; (*GB) gi|255545076|ref|XP_002513599.1| (e_value=3e-75) ubiquitin-conjugating enzyme E2, putative [Ricinus communis];; (*SWP) sp|P35132|UBC9_ARATH (e_value=3e-70) SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1;; (*TAIR) AT4G27960.1 (e_value=2e-71) | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | chr4:13916065-13917203 REVERSE LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=3e-73) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00048738g0008.1 protein AED:0.28 eAED:0.28 QI:110|1|1|1|1|1|4|352|220; (*GB) gi|225462707|ref|XP_002267282.1| (e_value=3e-110) PREDICTED: myosin IB heavy chain [Vitis vinifera];; (*SWP) sp|P34092|MYOB_DICDI (e_value=1e-15) Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2;; (*TAIR) AT5G53310.1 (e_value=7e-90) | Symbols: | myosin heavy chain-related | chr5:21634657-21636094 FORWARD LENGTH=210;; (*ITAG) Solyc03g007480.2.1 (e_value=1e-137) genomic_reference:SL2.40ch03 gene_region:2052867-2055919 transcript_region:SL2.40ch03:2052867..2055919+ go_terms:GO:0016459 functional_description:"Myosin (AHRD V1 ***- D2UY43_NAEGR); contains Interpro domain(s) IPR010926 Myosin tail 2 "; GO:0016459 NbS00010716g0003.1 protein AED:0.40 eAED:0.40 QI:162|0.92|0.85|1|0.84|0.85|14|0|377; (*GB) gi|350535697|ref|NP_001233952.1| (e_value=0.0) protein tyrosine phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9FEB5|DSP4_ARATH (e_value=1e-166) Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis thaliana GN=DSP4 PE=1 SV=1;; (*TAIR) AT3G52180.1 (e_value=8e-168) | Symbols: ATPTPKIS1, DSP4, SEX4, ATSEX4 | dual specificity protein phosphatase (DsPTP1) family protein | chr3:19349884-19353459 REVERSE LENGTH=379;; (*ITAG) Solyc11g007830.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2048363-2053398 transcript_region:SL2.40ch11:2048363..2053398+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual-specificity protein-like phosphatase 3 (AHRD V1 ***- Q3S4H5_MAIZE); contains Interpro domain(s) IPR000387 Dual-specific/protein-tyrosine phosphatase, conserved region IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00039520g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|354; (*GB) gi|225449969|ref|XP_002271281.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase-like protein At3g51990 [Vitis vinifera];; (*SWP) sp|Q9SV05|CCR35_ARATH (e_value=1e-136) Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1;; (*TAIR) AT3G51990.1 (e_value=1e-137) | Symbols: | Protein kinase superfamily protein | chr3:19287989-19289077 FORWARD LENGTH=362;; (*ITAG) Solyc01g088050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74660522-74662433 transcript_region:SL2.40ch01:74660522..74662433+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00021288g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|307135946|gb|ADN33807.1| (e_value=3e-22) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00026138g0009.1 protein AED:0.14 eAED:0.19 QI:790|0.4|0.5|1|0.4|0.33|6|470|852; (*GB) gi|225449685|ref|XP_002265036.1| (e_value=4e-150) PREDICTED: uncharacterized protein LOC100266152 [Vitis vinifera];; (*TAIR) AT5G04670.1 (e_value=2e-100) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr5:1337998-1340884 REVERSE LENGTH=766;; (*ITAG) Solyc07g053190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58972424-58976581 transcript_region:SL2.40ch07:58972424..58976581+ functional_description:"Nucleic acid binding protein (AHRD V1 *--- D7M9R5_ARALY); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; NbS00026138g0008.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.5|1|1|2|0|208; (*GB) gi|357453589|ref|XP_003597072.1| (e_value=2e-80) hypothetical protein MTR_2g089350 [Medicago truncatula];; (*TAIR) AT1G11360.4 (e_value=4e-79) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3822171-3822899 REVERSE LENGTH=242;; (*ITAG) Solyc07g053200.2.1 (e_value=8e-98) genomic_reference:SL2.40ch07 gene_region:58978053-58979412 transcript_region:SL2.40ch07:58978053..58979412- go_terms:GO:0006950 functional_description:"Universal stress protein (Usp) (AHRD V1 **-- A2Q2X4_MEDTR); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00026138g0004.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|350538093|ref|NP_001234582.1| (e_value=4e-30) calcium-dependent protein kinase CDPK1 [Solanum lycopersicum];; (*SWP) sp|P53683|CDPK2_ORYSJ (e_value=8e-13) Calcium-dependent protein kinase isoform 2 OS=Oryza sativa subsp. japonica GN=CPK2 PE=2 SV=2;; (*TAIR) AT3G20410.1 (e_value=1e-13) | Symbols: CPK9 | calmodulin-domain protein kinase 9 | chr3:7116388-7118824 FORWARD LENGTH=541;; (*ITAG) Solyc07g064610.2.1 (e_value=6e-33) genomic_reference:SL2.40ch07 gene_region:63903803-63909109 transcript_region:SL2.40ch07:63903803..63909109+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q944W9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00005740g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|398; (*GB) gi|225440797|ref|XP_002276044.1| (e_value=8e-98) PREDICTED: F-box protein At2g27310 [Vitis vinifera];; (*SWP) sp|Q9SIH5|FB322_ARATH (e_value=9e-83) Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At2g36090 PE=2 SV=1;; (*TAIR) AT2G36090.1 (e_value=7e-84) | Symbols: | F-box family protein | chr2:15158631-15159584 FORWARD LENGTH=317;; (*ITAG) Solyc10g083230.1.1 (e_value=7e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62412475-62413650 transcript_region:SL2.40ch10:62412475..62413650+ functional_description:"F-box family protein (AHRD V1 ***- B9MYU0_POPTR)"; NbS00042982g0002.1 protein AED:0.75 eAED:0.81 QI:0|0|0|0.66|1|1|3|0|89 NbS00030632g0004.1 protein AED:0.08 eAED:0.08 QI:278|0.8|0.83|1|1|1|6|425|305; (*GB) gi|356496649|ref|XP_003517178.1| (e_value=7e-112) PREDICTED: protein AF-9 homolog [Glycine max];; (*SWP) sp|Q755P0|AF9_ASHGO (e_value=1e-31) Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1;; (*TAIR) AT5G45600.2 (e_value=6e-101) | Symbols: GAS41 | YEATS family protein | chr5:18488059-18489666 FORWARD LENGTH=267;; (*ITAG) Solyc02g084000.2.1 (e_value=2e-167) genomic_reference:SL2.40ch02 gene_region:41800229-41803502 transcript_region:SL2.40ch02:41800229..41803502+ go_terms:GO:0005515,GO:0004402 functional_description:"YEATS domain-containing protein (AHRD V1 **-- C1EEG0_9CHLO); contains Interpro domain(s) IPR005033 YEATS "; GO:0005515,GO:0004402 NbS00013930g0007.1 protein AED:0.05 eAED:0.05 QI:114|0.90|0.91|1|1|1|12|706|598; (*GB) gi|11878280|gb|AAG40879.1|AF321497_1 (e_value=0.0) phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Nicotiana tabacum];; (*SWP) sp|Q0AW31|PUR9_SYNWW (e_value=2e-163) Bifunctional purine biosynthesis protein PurH OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=purH PE=3 SV=1;; (*TAIR) AT2G35040.1 (e_value=0.0) | Symbols: | AICARFT/IMPCHase bienzyme family protein | chr2:14765347-14768269 REVERSE LENGTH=596;; (*ITAG) Solyc08g075160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56470989-56477178 transcript_region:SL2.40ch08:56470989..56477178+ go_terms:GO:0004643,GO:0003937 functional_description:"Bifunctional purine biosynthesis protein purH (AHRD V1 ***- D4Q5I3_LISMO); contains Interpro domain(s) IPR002695 AICARFT/IMPCHase bienzyme "; GO:0004643,GO:0003937 NbS00013930g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.83|0.92|1|0.91|0.92|13|273|408; (*GB) gi|225423637|ref|XP_002276048.1| (e_value=0.0) PREDICTED: probable UDP-N-acetylglucosamine pyrophosphorylase [Vitis vinifera];; (*SWP) sp|O64765|UAP1_ARATH (e_value=0.0) Probable UDP-N-acetylglucosamine pyrophosphorylase OS=Arabidopsis thaliana GN=At2g35020 PE=2 SV=1;; (*TAIR) AT1G31070.2 (e_value=0.0) | Symbols: GlcNAc1pUT1 | N-acetylglucosamine-1-phosphate uridylyltransferase 1 | chr1:11084951-11088361 FORWARD LENGTH=505;; (*ITAG) Solyc02g068530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33060678-33069001 transcript_region:SL2.40ch02:33060678..33069001+ go_terms:GO:0003977 functional_description:"UDP-N-acetylglucosamine pyrophosphorylase (AHRD V1 **** B6T8T3_MAIZE); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0003977 NbS00013930g0008.1 protein AED:0.19 eAED:0.19 QI:90|0|0|0.66|0.4|0.5|6|0|477; (*GB) gi|350284769|gb|AEQ27756.1| (e_value=2e-61) receptor-like protein [Malus x domestica];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=1e-35) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=9e-41) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc02g068540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33072798-33074500 transcript_region:SL2.40ch02:33072798..33074500+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00044711g0008.1 protein AED:0.11 eAED:0.11 QI:186|0.86|0.75|1|0.73|0.87|16|148|1430; (*GB) gi|297739782|emb|CBI29964.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q15393|SF3B3_HUMAN (e_value=2e-24) Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4;; (*TAIR) AT3G11960.1 (e_value=0.0) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:3786431-3793160 FORWARD LENGTH=1379;; (*ITAG) Solyc10g080630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61180672-61193578 transcript_region:SL2.40ch10:61180672..61193578- go_terms:GO:0005634 functional_description:"DNA damage-binding protein 1 (AHRD V1 *--- C0H989_SALSA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005634 NbS00047135g0003.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|1|0.66|3|0|485; (*GB) gi|170676246|gb|ACB30362.1| (e_value=0.0) transcription factor [Capsicum annuum];; (*TAIR) AT5G54630.1 (e_value=3e-168) | Symbols: | zinc finger protein-related | chr5:22192607-22194260 REVERSE LENGTH=472;; (*ITAG) Solyc07g063970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63520045-63522798 transcript_region:SL2.40ch07:63520045..63522798- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00060306g0004.1 protein AED:0.06 eAED:0.06 QI:83|0.75|0.6|1|0.25|0.4|5|66|310; (*GB) gi|359488343|ref|XP_002283020.2| (e_value=3e-134) PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Vitis vinifera];; (*SWP) sp|P51110|DFRA_VITVI (e_value=2e-23) Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1;; (*TAIR) AT5G14700.1 (e_value=1e-56) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:4740502-4743327 REVERSE LENGTH=368;; (*ITAG) Solyc02g089770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46055433-46058696 transcript_region:SL2.40ch02:46055433..46058696+ go_terms:GO:0004022,GO:0045551 functional_description:"Dihydroflavonol-4-reductase (AHRD V1 ***- B6TK03_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022,GO:0045551 NbS00024032g0001.1 protein AED:0.46 eAED:0.46 QI:0|1|0.5|1|1|1|2|0|127; (*GB) gi|38258219|sp|Q94G00.1|PIN1_MALDO (e_value=4e-67) RecName: Full=Peptidyl-prolyl cis-trans isomerase Pin1; Short=PPIase Pin1; AltName: Full=MdPin1; AltName: Full=Rotamase Pin1;; (*SWP) sp|Q94G00|PIN1_MALDO (e_value=1e-68) Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1;; (*TAIR) AT2G18040.1 (e_value=1e-64) | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 | chr2:7842346-7843537 FORWARD LENGTH=119;; (*ITAG) Solyc02g062250.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:28434345-28439977 transcript_region:SL2.40ch02:28434345..28439977+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase C (AHRD V1 *--* PPIC_ECOLI); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0003755 NbS00024032g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|138; (*GB) gi|77999293|gb|ABB16993.1| (e_value=1e-92) unknown [Solanum tuberosum];; (*SWP) sp|P46297|RS23_FRAAN (e_value=7e-93) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=4e-90) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=3e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00015253g0007.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|365222884|gb|AEW69794.1| (e_value=2e-80) Hop-interacting protein THI031 [Solanum lycopersicum];; (*TAIR) AT5G40690.1 (e_value=9e-45) | Symbols: | CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16290770-16291402 FORWARD LENGTH=210;; (*ITAG) Solyc02g093710.1.1 (e_value=4e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49040402-49040977 transcript_region:SL2.40ch02:49040402..49040977+ functional_description:"Genomic DNA chromosome 3 TAC clone K1G2 (AHRD V1 *-*- Q9LTZ3_ARATH)"; NbS00015253g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|544; (*GB) gi|225452208|ref|XP_002270991.1| (e_value=0.0) PREDICTED: UPF0392 protein RCOM_0530710-like [Vitis vinifera];; (*SWP) sp|B9SLR1|Y231_RICCO (e_value=0.0) UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0530710 PE=3 SV=1;; (*TAIR) AT5G40720.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF23) | chr5:16298063-16299893 FORWARD LENGTH=583;; (*ITAG) Solyc02g093750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49060046-49062184 transcript_region:SL2.40ch02:49060046..49062184+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00015253g0019.1 protein AED:0.08 eAED:0.09 QI:0|1|0.66|1|1|1|6|0|403; (*GB) gi|255571976|ref|XP_002526929.1| (e_value=3e-103) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8IYW5|RN168_HUMAN (e_value=6e-13) E3 ubiquitin-protein ligase RNF168 OS=Homo sapiens GN=RNF168 PE=1 SV=1;; (*TAIR) AT3G27330.1 (e_value=9e-48) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:10116950-10120516 REVERSE LENGTH=913;; (*ITAG) Solyc02g093760.2.1 (e_value=1e-176) genomic_reference:SL2.40ch02 gene_region:49062523-49064595 transcript_region:SL2.40ch02:49062523..49064595- go_terms:GO:0008270 functional_description:"Tripartite motif-containing 25 (AHRD V1 *--- Q6P7B3_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00015253g0018.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|269; (*GB) gi|359488652|ref|XP_002271033.2| (e_value=1e-99) PREDICTED: myb-related protein 315-like [Vitis vinifera];; (*SWP) sp|P81394|MYB15_ANTMA (e_value=3e-73) Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1;; (*TAIR) AT5G14340.1 (e_value=1e-81) | Symbols: AtMYB40, MYB40 | myb domain protein 40 | chr5:4623367-4624779 FORWARD LENGTH=263;; (*ITAG) Solyc02g093740.2.1 (e_value=4e-133) genomic_reference:SL2.40ch02 gene_region:49050918-49052171 transcript_region:SL2.40ch02:49050918..49052171- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00015253g0020.1 protein AED:0.19 eAED:0.20 QI:159|0.69|0.78|0.92|0.69|0.57|14|192|744; (*GB) gi|255571970|ref|XP_002526926.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G27325.1 (e_value=0.0) | Symbols: | hydrolases, acting on ester bonds | chr3:10096224-10102087 FORWARD LENGTH=1085;; (*ITAG) Solyc02g093770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49064946-49077850 transcript_region:SL2.40ch02:49064946..49077850- go_terms:GO:0031227 functional_description:"GPI inositol-deacylase (AHRD V1 *-*- C5FP83_NANOT); contains Interpro domain(s) IPR012908 PGAP1-like "; GO:0031227 NbS00015253g0017.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.4|0.9|1|1|10|251|791; (*GB) gi|224055665|ref|XP_002298592.1| (e_value=4e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27350.1 (e_value=1e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast hits to 202 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr3:10126238-10127600 FORWARD LENGTH=274;; (*ITAG) Solyc02g093720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49041484-49045270 transcript_region:SL2.40ch02:49041484..49045270- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00044629g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.55|1|1|1|9|0|810; (*GB) gi|255550522|ref|XP_002516311.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L7V3|PMTQ_ARATH (e_value=0.0) Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1;; (*TAIR) AT5G64030.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829;; (*ITAG) Solyc05g056580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64972779-64977121 transcript_region:SL2.40ch05:64972779..64977121- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00044629g0006.1 protein AED:0.71 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|59 NbS00061951g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|224134687|ref|XP_002321883.1| (e_value=1e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62150.1 (e_value=2e-34) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr5:24958325-24958633 FORWARD LENGTH=102;; (*ITAG) Solyc03g026370.1.1 (e_value=8e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8185407-8185742 transcript_region:SL2.40ch03:8185407..8185742+ go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7MLA8_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00049843g0014.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0.33|3|0|609; (*GB) gi|255541460|ref|XP_002511794.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|O22193|PUB4_ARATH (e_value=1e-11) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT2G45720.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:18834468-18836129 FORWARD LENGTH=553;; (*ITAG) Solyc01g091740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77085765-77088074 transcript_region:SL2.40ch01:77085765..77088074- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LD78_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00049843g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.28|0.85|1|1|7|0|273; (*GB) gi|255541462|ref|XP_002511795.1| (e_value=3e-143) peroxisomal biogenesis factor, putative [Ricinus communis];; (*SWP) sp|O80845|PX11D_ARATH (e_value=4e-137) Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2;; (*TAIR) AT2G45740.3 (e_value=3e-138) | Symbols: PEX11D | peroxin 11D | chr2:18839865-18841102 FORWARD LENGTH=236;; (*ITAG) Solyc10g017850.2.1 (e_value=1e-145) genomic_reference:SL2.40ch10 gene_region:6046481-6049651 transcript_region:SL2.40ch10:6046481..6049651+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-1 (AHRD V1 ***- PX111_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00049843g0017.1 protein AED:0.34 eAED:0.39 QI:0|0.2|0.09|1|0.2|0.27|11|132|599; (*GB) gi|297741102|emb|CBI31833.3| (e_value=3e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=3e-48) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=2e-49) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc01g091710.2.1 (e_value=1e-143) genomic_reference:SL2.40ch01 gene_region:77067916-77072922 transcript_region:SL2.40ch01:77067916..77072922+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)"; NbS00049843g0016.1 protein AED:0.46 eAED:0.58 QI:0|1|0|1|0|1|2|0|140; (*GB) gi|224067844|ref|XP_002302561.1| (e_value=1e-25) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=2e-15) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=2e-16) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc01g091710.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:77067916-77072922 transcript_region:SL2.40ch01:77067916..77072922+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)"; NbS00028995g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|363; (*GB) gi|225454298|ref|XP_002276925.1| (e_value=1e-77) PREDICTED: WRKY transcription factor 22 [Vitis vinifera];; (*SWP) sp|O04609|WRK22_ARATH (e_value=1e-57) WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1;; (*TAIR) AT4G01250.1 (e_value=1e-58) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc01g095100.2.1 (e_value=2e-142) genomic_reference:SL2.40ch01 gene_region:78259686-78261279 transcript_region:SL2.40ch01:78259686..78261279+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00035480g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|1|1|1|6|590|296; (*GB) gi|77999240|gb|ABB16967.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P37707|B2_DAUCA (e_value=7e-88) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G27090.1 (e_value=1e-138) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:9990020-9991407 FORWARD LENGTH=296;; (*ITAG) Solyc02g094130.2.1 (e_value=5e-169) genomic_reference:SL2.40ch02 gene_region:49340142-49343204 transcript_region:SL2.40ch02:49340142..49343204- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00015720g0001.1 protein AED:0.26 eAED:0.64 QI:0|0|0|1|0|0|2|0|193; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-27) hypothetical protein [Nicotiana tabacum]; NbS00015720g0002.1 protein AED:0.32 eAED:0.45 QI:0|0|0|1|0|0|3|0|152; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-26) hypothetical protein [Nicotiana tabacum]; NbS00034225g0003.1 protein AED:0.09 eAED:0.09 QI:235|0.88|0.94|1|0.88|0.89|19|380|1077; (*GB) gi|75253426|sp|Q66WV0.1|RBR1_NICBE (e_value=0.0) RecName: Full=Retinoblastoma-related protein 1; Short=NbRBR1;; (*SWP) sp|Q66WV0|RBR1_NICBE (e_value=0.0) Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1 PE=2 SV=1;; (*TAIR) AT3G12280.2 (e_value=0.0) | Symbols: RBR1 | retinoblastoma-related 1 | chr3:3913671-3918433 REVERSE LENGTH=1012;; (*ITAG) Solyc09g091280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65919886-65926437 transcript_region:SL2.40ch09:65919886..65926437+ go_terms:GO:0008134 functional_description:"Retinoblastoma-related protein 1 (AHRD V1 ***- Q9M7J0_9ROSI); contains Interpro domain(s) IPR002720 Retinoblastoma-associated protein, A-box "; GO:0008134 NbS00036177g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|500; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=0.0) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=0.0) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00014586g0013.1 protein AED:0.12 eAED:0.12 QI:184|0|0.5|1|1|0.5|2|255|58 NbS00014586g0017.1 protein AED:0.15 eAED:0.15 QI:157|0.85|0.62|1|0.85|0.87|8|0|675; (*GB) gi|297742068|emb|CBI33855.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UBS8|RNF14_HUMAN (e_value=3e-52) E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1 SV=1;; (*TAIR) AT1G32340.1 (e_value=0.0) | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-11666037 REVERSE LENGTH=688;; (*ITAG) Solyc08g005150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:97549-104036 transcript_region:SL2.40ch08:97549..104036+ go_terms:GO:0003713,GO:0004842 functional_description:"Ubiquitin ligase (AHRD V1 **-* B3G3Y7_ADIVA); contains Interpro domain(s) IPR006575 RWD "; GO:0003713,GO:0004842 NbS00014586g0001.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|1|1|2|0|324; (*GB) gi|356538160|ref|XP_003537572.1| (e_value=6e-79) PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Glycine max];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=1e-65) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT4G38150.2 (e_value=1e-66) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17901211-17902119 REVERSE LENGTH=302;; (*ITAG) Solyc12g096140.1.1 (e_value=1e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63520457-63521479 transcript_region:SL2.40ch12:63520457..63521479- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014586g0011.1 protein AED:0.43 eAED:0.43 QI:152|0.75|0.6|0.8|1|1|5|0|110; (*GB) gi|15217447|ref|NP_177894.1| (e_value=2e-51) ubiquitin-fold modifier 1 [Arabidopsis thaliana];; (*SWP) sp|Q9CA23|UFM1_ARATH (e_value=5e-53) Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=2 SV=1;; (*TAIR) AT1G77710.1 (e_value=4e-54) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206750-29207895 FORWARD LENGTH=93;; (*ITAG) Solyc08g075780.2.1 (e_value=4e-53) genomic_reference:SL2.40ch08 gene_region:57060353-57063186 transcript_region:SL2.40ch08:57060353..57063186+ go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier 1 (AHRD V1 ***- B6SXA8_MAIZE); contains Interpro domain(s) IPR005375 Ubiquitin-like, Ufm1 "; GO:0005515 NbS00014586g0014.1 protein AED:0.01 eAED:0.01 QI:439|1|0.83|1|0.8|0.66|6|202|317; (*GB) gi|225427441|ref|XP_002267479.1| (e_value=5e-130) PREDICTED: protein BREVIS RADIX [Vitis vinifera];; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=1e-108) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=9e-110) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc12g096110.1.1 (e_value=3e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63509764-63511639 transcript_region:SL2.40ch12:63509764..63511639+ functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; NbS00014586g0016.1 protein AED:0.38 eAED:0.80 QI:0|0|0|1|0|0|2|0|75 NbS00058977g0002.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|196; (*GB) gi|255578595|ref|XP_002530159.1| (e_value=3e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G36026.1 (e_value=3e-35) | Symbols: | Ovate family protein | chr2:15127265-15127816 FORWARD LENGTH=183;; (*ITAG) Solyc01g007800.2.1 (e_value=3e-90) genomic_reference:SL2.40ch01 gene_region:1955327-1956217 transcript_region:SL2.40ch01:1955327..1956217+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SZV1_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00002893g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.66|1|1|3|0|109 NbS00044304g0005.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0|1|2|0|174; (*GB) gi|225449989|ref|XP_002273592.1| (e_value=3e-102) PREDICTED: N-alpha-acetyltransferase 11 [Vitis vinifera];; (*SWP) sp|Q3UX61|NAA11_MOUSE (e_value=3e-71) N-alpha-acetyltransferase 11 OS=Mus musculus GN=Naa11 PE=2 SV=1;; (*TAIR) AT5G13780.1 (e_value=7e-99) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:4447610-4448603 REVERSE LENGTH=192;; (*ITAG) Solyc01g087900.2.1 (e_value=7e-108) genomic_reference:SL2.40ch01 gene_region:74528983-74532682 transcript_region:SL2.40ch01:74528983..74532682- go_terms:GO:0004596,GO:0042802 functional_description:"N-alpha-acetyltransferase 20, NatB catalytic subunit (AHRD V1 **** NAA20_DICDI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596,GO:0042802 NbS00032878g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|495; (*GB) gi|225426063|ref|XP_002275970.1| (e_value=0.0) PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera];; (*SWP) sp|P21577|6PGD_SYNE7 (e_value=0.0) 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4;; (*TAIR) AT5G41670.2 (e_value=0.0) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr5:16665647-16667110 REVERSE LENGTH=487;; (*ITAG) Solyc12g056120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47444899-47446389 transcript_region:SL2.40ch12:47444899..47446389+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 ***- Q9FFR3_ARATH); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00055412g0007.1 protein AED:0.09 eAED:0.09 QI:171|0.66|0.85|1|0.83|0.85|7|265|407; (*GB) gi|45387409|gb|AAS60195.1| (e_value=0.0) hexokinase 4a [Nicotiana tabacum];; (*SWP) sp|P93834|HXK2_ARATH (e_value=0.0) Hexokinase-2 OS=Arabidopsis thaliana GN=HXK2 PE=1 SV=1;; (*TAIR) AT2G19860.1 (e_value=0.0) | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570818-8573762 FORWARD LENGTH=502;; (*ITAG) Solyc12g008510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1919482-1924150 transcript_region:SL2.40ch12:1919482..1924150- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q4PS97_SOLLC); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0004340 NbS00055412g0008.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.8|0.25|0.4|5|0|976; (*GB) gi|225445082|ref|XP_002280395.1| (e_value=0.0) PREDICTED: receptor-like protein kinase HSL1-like [Vitis vinifera];; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=8e-158) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G25930.1 (e_value=0.0) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc12g008500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1915241-1918466 transcript_region:SL2.40ch12:1915241..1918466+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00005672g0006.1 protein AED:0.12 eAED:0.14 QI:0|1|0.5|1|0|0|2|473|616; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=0.0) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=0.0) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc05g053090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005672g0019.1 protein AED:0.19 eAED:0.19 QI:0|0.72|0.58|1|0.72|0.66|12|273|682; (*GB) gi|356547867|ref|XP_003542326.1| (e_value=0.0) PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00005672g0018.1 protein AED:0.22 eAED:0.29 QI:0|0|0|1|0.33|0.5|4|0|263; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=6e-40) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80933|SCL9_ARATH (e_value=1e-32) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=1e-33) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc05g053090.1.1 (e_value=5e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005672g0016.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|1|1|2|0|70; (*ITAG) Solyc05g053050.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:62350957-62351181 transcript_region:SL2.40ch05:62350957..62351181- functional_description:"Unknown Protein (AHRD V1)"; NbS00005672g0007.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=5e-24) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80933|SCL9_ARATH (e_value=7e-13) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=5e-14) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc05g053090.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005672g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=1e-21) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O80933|SCL9_ARATH (e_value=1e-14) Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1;; (*TAIR) AT2G37650.1 (e_value=1e-15) | Symbols: | GRAS family transcription factor | chr2:15792623-15794779 FORWARD LENGTH=718;; (*ITAG) Solyc05g053090.1.1 (e_value=7e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005672g0004.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|580; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-148) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-147) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00005672g0014.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|106 NbS00005096g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.57|1|0.66|0.57|7|236|570; (*GB) gi|225448311|ref|XP_002264923.1| (e_value=3e-82) PREDICTED: uncharacterized protein LOC100257088 [Vitis vinifera];; (*TAIR) AT5G64170.1 (e_value=3e-23) | Symbols: | dentin sialophosphoprotein-related | chr5:25672904-25675445 REVERSE LENGTH=566;; (*ITAG) Solyc01g105120.2.1 (e_value=2e-137) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00005096g0018.1 protein AED:0.19 eAED:0.19 QI:0|0.28|0.25|0.87|0.28|0.37|8|0|306; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=3e-148) EBP1 [Solanum tuberosum];; (*SWP) sp|P50580|PA2G4_MOUSE (e_value=7e-54) Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3;; (*TAIR) AT3G51800.3 (e_value=2e-133) | Symbols: ATG2 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385;; (*ITAG) Solyc06g007200.2.1 (e_value=4e-159) genomic_reference:SL2.40ch06 gene_region:1270929-1276535 transcript_region:SL2.40ch06:1270929..1276535+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00005096g0013.1 protein AED:0.27 eAED:0.31 QI:86|0.33|0.5|1|0.33|0.5|4|383|210; (*GB) gi|225448313|ref|XP_002265235.1| (e_value=6e-46) PREDICTED: uncharacterized protein LOC100251961 [Vitis vinifera];; (*TAIR) AT5G64160.1 (e_value=7e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25670941-25672318 FORWARD LENGTH=227;; (*ITAG) Solyc10g047220.1.1 (e_value=2e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:35685596-35689949 transcript_region:SL2.40ch10:35685596..35689949+ functional_description:"Genomic DNA chromosome 5 P1 clone MHJ24 (AHRD V1 ***- Q9FMI4_ARATH)"; NbS00005096g0015.1 protein AED:0.33 eAED:0.49 QI:0|0.14|0.12|0.25|1|1|8|233|753; (*GB) gi|296089959|emb|CBI39778.3| (e_value=7e-92) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G07660.1 (e_value=3e-16) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc07g045230.2.1 (e_value=4e-27) genomic_reference:SL2.40ch07 gene_region:55658476-55669122 transcript_region:SL2.40ch07:55658476..55669122- functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 *--- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00020488g0019.1 protein AED:0.27 eAED:0.27 QI:0|0.37|0.22|0.88|0.62|0.66|9|0|374; (*GB) gi|224086024|ref|XP_002307782.1| (e_value=1e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-42) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G76270.1 (e_value=5e-163) | Symbols: | O-fucosyltransferase family protein | chr1:28613554-28616537 REVERSE LENGTH=572;; (*ITAG) Solyc12g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64260052-64263538 transcript_region:SL2.40ch12:64260052..64263538+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00020488g0021.1 protein AED:0.29 eAED:0.28 QI:0|0.91|0.84|1|0.91|0.84|13|244|429; (*GB) gi|297848730|ref|XP_002892246.1| (e_value=1e-176) ubiquitin-associated /TS-N domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G04850.1 (e_value=2e-178) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc12g098420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00020488g0022.1 protein AED:0.30 eAED:0.30 QI:326|1|1|1|0.57|0.75|8|373|169; (*GB) gi|351726864|ref|NP_001236629.1| (e_value=5e-117) uncharacterized protein LOC100527736 [Glycine max];; (*SWP) sp|O96625|ARPC4_DICDI (e_value=6e-83) Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum GN=arcD PE=1 SV=1;; (*TAIR) AT4G14147.1 (e_value=5e-116) | Symbols: ARPC4 | protein binding | chr4:8154079-8156246 REVERSE LENGTH=169;; (*ITAG) Solyc12g098430.1.1 (e_value=3e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64274593-64279444 transcript_region:SL2.40ch12:64274593..64279444+ go_terms:GO:0030674,GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 4 (AHRD V1 **** A2XP21_ORYSI); contains Interpro domain(s) IPR008384 ARP23 complex 20 kDa subunit "; GO:0030674,GO:0051015 NbS00020488g0006.1 protein AED:0.28 eAED:0.31 QI:0|0.5|0|1|1|1|3|0|333; (*GB) gi|224065399|ref|XP_002301798.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=4e-13) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1;; (*TAIR) AT3G25070.1 (e_value=3e-14) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc12g098440.1.1 (e_value=7e-177) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:64280961-64285394 transcript_region:SL2.40ch12:64280961..64285394+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0X0_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00020488g0020.1 protein AED:0.42 eAED:0.83 QI:34|1|0.33|1|0|0|3|173|75 NbS00020488g0031.1 protein AED:0.25 eAED:0.25 QI:167|0.75|0.77|0.88|0.62|0.44|9|0|284; (*GB) gi|357462735|ref|XP_003601649.1| (e_value=5e-84) Magnesium transporter NIPA2 [Medicago truncatula];; (*SWP) sp|Q5R7Q3|NIPA2_PONAB (e_value=5e-38) Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1;; (*TAIR) AT3G23870.1 (e_value=2e-81) | Symbols: | Protein of unknown function (DUF803) | chr3:8620253-8621755 FORWARD LENGTH=335;; (*ITAG) Solyc12g098450.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64286848-64290731 transcript_region:SL2.40ch12:64286848..64290731- functional_description:"DUF803 domain membrane protein (AHRD V1 **-- Q4WRL6_ASPFU); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00020488g0010.1 protein AED:0.51 eAED:0.60 QI:0|0|0|0.6|1|1|5|0|163 NbS00042984g0008.1 protein AED:0.06 eAED:0.23 QI:539|0.62|0.66|1|0.75|0.55|9|591|1588; (*GB) gi|297733909|emb|CBI15156.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9BY12|SCAPE_HUMAN (e_value=3e-17) S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens GN=SCAPER PE=1 SV=1;; (*ITAG) Solyc03g115510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59233081-59241441 transcript_region:SL2.40ch03:59233081..59241441+ functional_description:"S phase cyclin A-associated protein in the endoplasmic reticulum (AHRD V1 *--- SCAPE_HUMAN)"; NbS00042984g0006.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|0.5|0|0|2|344|87 NbS00008537g0005.1 protein AED:0.22 eAED:0.22 QI:256|0.96|0.96|1|0.87|0.84|33|639|1119; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=0.0) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.2 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1115;; (*ITAG) Solyc11g006320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1032998-1053714 transcript_region:SL2.40ch11:1032998..1053714- go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00010450g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|230; (*GB) gi|3256372|dbj|BAA29064.1| (e_value=2e-110) heat shock protein 26 (Type I) [Nicotiana tabacum];; (*SWP) sp|P30222|HS22C_PETHY (e_value=5e-99) Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1;; (*TAIR) AT4G27670.1 (e_value=2e-58) | Symbols: HSP21 | heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227;; (*ITAG) Solyc03g082420.2.1 (e_value=7e-94) genomic_reference:SL2.40ch03 gene_region:45898742-45899828 transcript_region:SL2.40ch03:45898742..45899828- functional_description:"Heat shock protein (AHRD V1 ***- A9QVH3_9FABA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00010450g0001.1 protein AED:0.07 eAED:0.33 QI:0|0.33|0|1|1|1|4|0|588; (*GB) gi|359490734|ref|XP_002271355.2| (e_value=1e-68) PREDICTED: uncharacterized protein LOC100250422 [Vitis vinifera];; (*TAIR) AT5G53660.1 (e_value=2e-35) | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 | chr5:21794636-21795929 FORWARD LENGTH=365;; (*ITAG) Solyc03g082430.1.1 (e_value=6e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:45902716-45904451 transcript_region:SL2.40ch03:45902716..45904451- go_terms:GO:0005634 functional_description:"Growth-regulating factor 4 (AHRD V1 *--- Q6ZIK5_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00010450g0003.1 protein AED:0.20 eAED:0.21 QI:0|0.66|0.7|1|0.88|0.8|10|270|364; (*GB) gi|225455232|ref|XP_002272223.1| (e_value=4e-117) PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera];; (*TAIR) AT1G32790.1 (e_value=1e-110) | Symbols: CID11 | CTC-interacting domain 11 | chr1:11875174-11877188 REVERSE LENGTH=358;; (*ITAG) Solyc03g082390.2.1 (e_value=7e-177) genomic_reference:SL2.40ch03 gene_region:45884107-45891169 transcript_region:SL2.40ch03:45884107..45891169+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein (AHRD V1 *-** Q1PFP3_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00010450g0011.1 protein AED:0.65 eAED:0.65 QI:68|0|0|0.5|0|0|2|0|49; (*ITAG) Solyc03g082400.2.1 (e_value=7e-14) genomic_reference:SL2.40ch03 gene_region:45892861-45898769 transcript_region:SL2.40ch03:45892861..45898769+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein (AHRD V1 *-** D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515,GO:0003723 NbS00002808g0024.1 protein AED:0.06 eAED:0.06 QI:300|1|1|1|0.62|0.44|9|220|337; (*GB) gi|359477685|ref|XP_002285459.2| (e_value=5e-105) PREDICTED: oxidation resistance protein 1-like [Vitis vinifera];; (*SWP) sp|Q8N573|OXR1_HUMAN (e_value=8e-20) Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2;; (*TAIR) AT2G05590.2 (e_value=1e-85) | Symbols: | TLD-domain containing nucleolar protein | chr2:2067196-2068951 FORWARD LENGTH=303;; (*ITAG) Solyc09g090670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65469158-65473532 transcript_region:SL2.40ch09:65469158..65473532- functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00002808g0027.1 protein AED:0.22 eAED:0.22 QI:145|0.85|0.85|1|0.65|0.66|21|492|482; (*GB) gi|1730181|sp|P54243.1|G6PI_OENME (e_value=0.0) RecName: Full=Glucose-6-phosphate isomerase, cytosolic; Short=GPI; AltName: Full=Phosphoglucose isomerase; Short=PGI; AltName: Full=Phosphohexose isomerase; Short=PHI;; (*SWP) sp|P54243|G6PI_OENME (e_value=0.0) Glucose-6-phosphate isomerase, cytosolic OS=Oenothera mexicana GN=PGIC PE=3 SV=1;; (*TAIR) AT5G42740.1 (e_value=0.0) | Symbols: | Sugar isomerase (SIS) family protein | chr5:17136080-17140622 FORWARD LENGTH=560;; (*ITAG) Solyc12g014380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5260573-5274052 transcript_region:SL2.40ch12:5260573..5274052+ go_terms:GO:0004347 functional_description:"Glucose-6-phosphate isomerase 1"; GO:0004347 NbS00002808g0030.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0.5|2|0|136; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=2e-60) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=1e-27) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=6e-23) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g088060.2.1 (e_value=4e-26) genomic_reference:SL2.40ch01 gene_region:74665132-74670971 transcript_region:SL2.40ch01:74665132..74670971- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00002808g0029.1 protein AED:0.56 eAED:0.79 QI:0|0|0|0.75|0.66|0.75|4|0|129 NbS00002808g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.66|1|0|0.66|3|349|300; (*GB) gi|356576446|ref|XP_003556342.1| (e_value=9e-99) PREDICTED: cysteine-rich repeat secretory protein 3-like [Glycine max];; (*SWP) sp|Q6NM73|CRR3_ARATH (e_value=1e-94) Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1;; (*TAIR) AT1G04520.1 (e_value=8e-96) | Symbols: PDLP2 | plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307;; (*ITAG) Solyc09g090680.2.1 (e_value=1e-123) genomic_reference:SL2.40ch09 gene_region:65477278-65479423 transcript_region:SL2.40ch09:65477278..65479423+ go_terms:GO:0030001 functional_description:"Cysteine-rich repeat secretory protein 3 (AHRD V1 ***- CRR3_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0030001 NbS00002808g0033.1 protein AED:0.14 eAED:0.14 QI:0|1|0.94|1|0.88|0.94|18|425|576; (*GB) gi|225433255|ref|XP_002285452.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 72 [Vitis vinifera];; (*SWP) sp|Q94BR4|PR19A_ARATH (e_value=0.0) Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1;; (*TAIR) AT1G04510.1 (e_value=0.0) | Symbols: MAC3A | MOS4-associated complex 3A | chr1:1226749-1230592 FORWARD LENGTH=523;; (*ITAG) Solyc09g090660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65460983-65469080 transcript_region:SL2.40ch09:65460983..65469080+ go_terms:GO:0042802 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042802 NbS00002808g0028.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|4|0|422; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=4e-177) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=8e-33) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=2e-29) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g076000.2.1 (e_value=2e-31) genomic_reference:SL2.40ch08 gene_region:57228860-57232981 transcript_region:SL2.40ch08:57228860..57232981+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00012831g0004.1 protein AED:0.39 eAED:0.43 QI:0|0|0|1|0|0.33|3|0|135; (*GB) gi|359481952|ref|XP_002284018.2| (e_value=2e-38) PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=5e-34) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=4e-35) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc10g085730.1.1 (e_value=4e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64138348-64140976 transcript_region:SL2.40ch10:64138348..64140976+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00012831g0005.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.33|1|1|3|0|112 NbS00012831g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|121; (*GB) gi|255575457|ref|XP_002528630.1| (e_value=2e-26) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=5e-23) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=4e-24) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc10g085730.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64138348-64140976 transcript_region:SL2.40ch10:64138348..64140976+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbC23785213g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|288550932|gb|ADC53072.1| (e_value=2e-57) actin [Cucurbita pepo];; (*SWP) sp|P24902|ACT_PINCO (e_value=1e-58) Actin (Fragment) OS=Pinus contorta PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=2e-56) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=8e-57) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00061446g0005.1 protein AED:0.04 eAED:0.04 QI:263|0.8|0.66|1|0.6|0.66|6|126|1481; (*GB) gi|255542460|ref|XP_002512293.1| (e_value=3e-59) Protein FRIGIDA, putative [Ricinus communis];; (*TAIR) AT5G48385.1 (e_value=1e-27) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc01g098240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80581581-80588427 transcript_region:SL2.40ch01:80581581..80588427+ functional_description:"RNA polymerase Rpb1 C-terminal repeat domain-containing protein (AHRD V1 *--- C5GU31_AJEDR); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00000007g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.16|0|0.42|0.33|0.28|7|0|443; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-152) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=6e-69) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=5e-70) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00013873g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0.66|1|4|118|382; (*GB) gi|359475821|ref|XP_002285150.2| (e_value=8e-97) PREDICTED: uncharacterized protein LOC100266444 [Vitis vinifera];; (*TAIR) AT4G32295.1 (e_value=1e-64) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15592960-15594080 FORWARD LENGTH=238;; (*ITAG) Solyc08g059700.1.1 (e_value=3e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:41957744-41959043 transcript_region:SL2.40ch08:41957744..41959043+ functional_description:"Genomic DNA chromosome 3 P1 clone MUJ8 (AHRD V1 ***- Q9LRN2_ARATH)"; NbS00013873g0007.1 protein AED:0.10 eAED:0.10 QI:882|0.5|0.6|1|0.5|0.4|5|0|230; (*GB) gi|255569710|ref|XP_002525819.1| (e_value=1e-85) 2-oxoglutarate/malate translocator, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q41364|SOT1_SPIOL (e_value=5e-38) 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1;; (*TAIR) AT5G64290.1 (e_value=8e-84) | Symbols: DCT, DIT2.1 | dicarboxylate transport 2.1 | chr5:25714495-25716642 REVERSE LENGTH=563;; (*ITAG) Solyc11g010290.1.1 (e_value=2e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3367406-3372067 transcript_region:SL2.40ch11:3367406..3372067- go_terms:GO:0015367 functional_description:"2-oxoglutarate/malate translocator (AHRD V1 **-* Q9FMF7_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0015367 NbS00056685g0004.1 protein AED:0.42 eAED:0.42 QI:0|0.8|0.66|0.83|0.4|0.5|6|342|156; (*GB) gi|255575056|ref|XP_002528433.1| (e_value=2e-75) ubiquitin-conjugating enzyme E2 G, putative [Ricinus communis];; (*SWP) sp|Q42540|UBC7_ARATH (e_value=7e-74) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1;; (*TAIR) AT5G59300.1 (e_value=2e-74) | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919868-23921304 REVERSE LENGTH=203;; (*ITAG) Solyc05g054540.2.1 (e_value=3e-79) genomic_reference:SL2.40ch05 gene_region:63586295-63589962 transcript_region:SL2.40ch05:63586295..63589962+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00046415g0004.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.28|0.71|1|1|7|0|389; (*GB) gi|359476159|ref|XP_002275514.2| (e_value=7e-53) PREDICTED: uncharacterized protein LOC100257795 [Vitis vinifera];; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=2e-22) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT1G20890.1 (e_value=2e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76480.2); Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7266088-7267060 REVERSE LENGTH=197;; (*ITAG) Solyc08g066030.2.1 (e_value=5e-88) genomic_reference:SL2.40ch08 gene_region:51705680-51709716 transcript_region:SL2.40ch08:51705680..51709716+ functional_description:"Unknown Protein (AHRD V1)"; NbS00060773g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|186; (*GB) gi|359491250|ref|XP_002279799.2| (e_value=7e-78) PREDICTED: uncharacterized protein LOC100241599 [Vitis vinifera];; (*TAIR) AT5G62840.1 (e_value=5e-73) | Symbols: | Phosphoglycerate mutase family protein | chr5:25228296-25229672 REVERSE LENGTH=297;; (*ITAG) Solyc03g114250.2.1 (e_value=1e-97) genomic_reference:SL2.40ch03 gene_region:58333902-58335830 transcript_region:SL2.40ch03:58333902..58335830+ go_terms:GO:0003824 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 **-- B6TTB7_MAIZE); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003824 NbS00004150g0012.1 protein AED:0.20 eAED:0.20 QI:0|0|0.33|1|0|0|3|0|535; (*GB) gi|225432412|ref|XP_002276957.1| (e_value=8e-70) PREDICTED: uncharacterized protein LOC100244334 [Vitis vinifera];; (*TAIR) AT3G06340.3 (e_value=2e-47) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920607-1922628 REVERSE LENGTH=673;; (*ITAG) Solyc01g067780.1.1 (e_value=1e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00004150g0013.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|0.33|0|4|0|329; (*GB) gi|224107425|ref|XP_002314476.1| (e_value=6e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g067780.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00004150g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.71|0.5|1|0.85|0.75|8|0|581; (*GB) gi|225432386|ref|XP_002276606.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g54610 [Vitis vinifera];; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G54610.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:20393962-20396902 REVERSE LENGTH=572;; (*ITAG) Solyc01g067640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68901650-68907289 transcript_region:SL2.40ch01:68901650..68907289+ go_terms:GO:0005515 functional_description:"Cell division protein kinase 12 (AHRD V1 ***- CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00004150g0014.1 protein AED:0.42 eAED:0.47 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|357478569|ref|XP_003609570.1| (e_value=6e-41) DnaJ homolog subfamily B member [Medicago truncatula];; (*TAIR) AT5G18730.1 (e_value=8e-35) | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6247611-6249197 FORWARD LENGTH=528;; (*ITAG) Solyc01g067780.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00044758g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.5|1|0.66|0.75|4|169|104 NbS00044758g0008.1 protein AED:0.11 eAED:0.11 QI:117|0.6|0.83|1|1|1|6|500|543; (*GB) gi|147846709|emb|CAN80639.1| (e_value=6e-29) hypothetical protein VITISV_026888 [Vitis vinifera];; (*ITAG) Solyc04g016290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7074883-7078461 transcript_region:SL2.40ch04:7074883..7078461+ go_terms:GO:0006353 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011112 Rho termination factor, N-terminal "; GO:0006353 NbS00009583g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|225434205|ref|XP_002279785.1| (e_value=5e-114) PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis vinifera];; (*SWP) sp|A4QND5|NIP7_XENTR (e_value=4e-80) 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1;; (*TAIR) AT4G15770.1 (e_value=3e-110) | Symbols: | RNA binding | chr4:8978060-8978623 FORWARD LENGTH=187;; (*ITAG) Solyc01g098100.2.1 (e_value=2e-134) genomic_reference:SL2.40ch01 gene_region:80462444-80463233 transcript_region:SL2.40ch01:80462444..80463233+ go_terms:GO:0005515 functional_description:"60S ribosome subunit biogenesis protein NIP7 (AHRD V1 ***- B4FKM9_MAIZE); contains Interpro domain(s) IPR016686 Ribosome biogenesis factor, NIP7 "; GO:0005515 NbS00026795g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|0.33|3|0|124; (*GB) gi|224118602|ref|XP_002317861.1| (e_value=5e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVI6|RLK90_ARATH (e_value=5e-19) Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1;; (*TAIR) AT3G17840.1 (e_value=4e-20) | Symbols: RLK902 | receptor-like kinase 902 | chr3:6106092-6108430 FORWARD LENGTH=647;; (*ITAG) Solyc03g118510.2.1 (e_value=2e-23) genomic_reference:SL2.40ch03 gene_region:61406457-61409311 transcript_region:SL2.40ch03:61406457..61409311+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00026795g0005.1 protein AED:0.27 eAED:0.27 QI:240|0.85|0.87|1|1|1|8|799|319; (*GB) gi|255554769|ref|XP_002518422.1| (e_value=1e-165) 50S ribosomal protein L4, putative [Ricinus communis];; (*SWP) sp|Q2W2J2|RL4_MAGSA (e_value=1e-59) 50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1;; (*TAIR) AT2G20060.1 (e_value=9e-164) | Symbols: | Ribosomal protein L4/L1 family | chr2:8659384-8661227 FORWARD LENGTH=300;; (*ITAG) Solyc12g088730.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62423490-62429208 transcript_region:SL2.40ch12:62423490..62429208+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- Q8LE97_ARATH); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0003735,GO:0005515 NbS00049206g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|314; (*GB) gi|147792168|emb|CAN77499.1| (e_value=5e-89) hypothetical protein VITISV_002404 [Vitis vinifera];; (*TAIR) AT1G07730.2 (e_value=2e-85) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:2397527-2398696 REVERSE LENGTH=389;; (*ITAG) Solyc06g075630.2.1 (e_value=4e-138) genomic_reference:SL2.40ch06 gene_region:43397564-43399083 transcript_region:SL2.40ch06:43397564..43399083- functional_description:"Dirigent-like protein (AHRD V1 ***- B6TVE6_MAIZE); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010944g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|481; (*GB) gi|198400349|gb|ACH87183.1| (e_value=2e-60) unknown protein [Camellia sinensis];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=2e-26) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT4G31980.1 (e_value=5e-47) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | chr4:15464905-15469204 FORWARD LENGTH=680;; (*ITAG) Solyc01g057260.2.1 (e_value=7e-93) genomic_reference:SL2.40ch01 gene_region:53150800-53153577 transcript_region:SL2.40ch01:53150800..53153577+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00054087g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|160; (*GB) gi|62183960|gb|AAX73301.1| (e_value=2e-92) putative ribosomal-protein S6 kinase-like protein [Solanum lycopersicum];; (*SWP) sp|Q39030|KPK2_ARATH (e_value=4e-57) Serine/threonine-protein kinase AtPK2/AtPK19 OS=Arabidopsis thaliana GN=ATPK2 PE=1 SV=2;; (*TAIR) AT3G08720.2 (e_value=3e-58) | Symbols: ATPK19, ATPK2 | serine/threonine protein kinase 2 | chr3:2648625-2650407 REVERSE LENGTH=471;; (*ITAG) Solyc06g071210.2.1 (e_value=3e-95) genomic_reference:SL2.40ch06 gene_region:40195864-40199946 transcript_region:SL2.40ch06:40195864..40199946+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase 2 alpha (AHRD V1 **** KS6AA_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00054087g0007.1 protein AED:0.14 eAED:0.14 QI:206|0.83|0.57|1|0.83|0.71|7|0|769; (*GB) gi|359487602|ref|XP_002278667.2| (e_value=0.0) PREDICTED: probable glutamyl-tRNA synthetase, cytoplasmic-like isoform 1 [Vitis vinifera];; (*SWP) sp|O13775|SYEC_SCHPO (e_value=0.0) Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1 SV=1;; (*TAIR) AT5G26710.1 (e_value=0.0) | Symbols: | Glutamyl/glutaminyl-tRNA synthetase, class Ic | chr5:9305673-9308247 FORWARD LENGTH=719;; (*ITAG) Solyc01g102410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82987257-82996076 transcript_region:SL2.40ch01:82987257..82996076- go_terms:GO:0006412,GO:0005737,GO:0004867 functional_description:"Glutaminyl-tRNA synthetase (AHRD V1 ***- A8BEZ0_GIALA); contains Interpro domain(s) IPR004526 Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic "; GO:0006412,GO:0005737,GO:0004867 NbS00013170g0012.1 protein AED:0.00 eAED:0.00 QI:47|1|1|1|0|0.5|2|332|74; (*GB) gi|20149060|gb|AAM12785.1| (e_value=2e-25) unknown [Capsicum annuum];; (*SWP) sp|Q9M373|AGP20_ARATH (e_value=4e-21) Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1;; (*TAIR) AT3G61640.1 (e_value=3e-22) | Symbols: AGP20, AtAGP20 | arabinogalactan protein 20 | chr3:22810283-22810629 REVERSE LENGTH=74;; (*ITAG) Solyc10g011730.2.1 (e_value=1e-29) genomic_reference:SL2.40ch10 gene_region:3981694-3982655 transcript_region:SL2.40ch10:3981694..3982655+ go_terms:GO:0005160 functional_description:"Arabinogalactan peptide 20 (AHRD V1 ***- AGP20_ARATH); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 "; GO:0005160 NbS00013170g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|224064167|ref|XP_002301396.1| (e_value=8e-51) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9M374|CRF6_ARATH (e_value=4e-36) Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1;; (*TAIR) AT3G61630.1 (e_value=3e-37) | Symbols: CRF6 | cytokinin response factor 6 | chr3:22805274-22806221 FORWARD LENGTH=315;; (*ITAG) Solyc01g095500.2.1 (e_value=5e-107) genomic_reference:SL2.40ch01 gene_region:78502748-78503807 transcript_region:SL2.40ch01:78502748..78503807+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00013170g0016.1 protein AED:0.18 eAED:0.19 QI:0|1|0.83|1|0.6|1|6|0|282; (*GB) gi|225454448|ref|XP_002276620.1| (e_value=9e-89) PREDICTED: solute carrier family 25 member 39-like [Vitis vinifera];; (*SWP) sp|Q4V8K4|S2539_RAT (e_value=1e-15) Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1;; (*TAIR) AT2G46320.1 (e_value=4e-76) | Symbols: | Mitochondrial substrate carrier family protein | chr2:19015998-19018020 FORWARD LENGTH=361;; (*ITAG) Solyc01g095510.2.1 (e_value=7e-142) genomic_reference:SL2.40ch01 gene_region:78512086-78519591 transcript_region:SL2.40ch01:78512086..78519591+ go_terms:GO:0005384,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005384,GO:0016530 NbS00013170g0013.1 protein AED:0.37 eAED:0.37 QI:21|0|0.5|1|0|0|2|0|81; (*GB) gi|2735258|gb|AAB93865.1| (e_value=7e-25) protein kinase, partial [Solanum lycopersicum];; (*ITAG) Solyc01g095510.2.1 (e_value=3e-15) genomic_reference:SL2.40ch01 gene_region:78512086-78519591 transcript_region:SL2.40ch01:78512086..78519591+ go_terms:GO:0005384,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005384,GO:0016530 NbS00060489g0004.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.33|0.83|0.4|0.66|6|0|160; (*GB) gi|225447520|ref|XP_002266987.1| (e_value=2e-60) PREDICTED: nudix hydrolase 2-like [Vitis vinifera];; (*SWP) sp|Q6NPD7|NUD10_ARATH (e_value=2e-53) Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1;; (*TAIR) AT4G25434.1 (e_value=2e-54) | Symbols: ATNUDT10, NUDT10 | nudix hydrolase homolog 10 | chr4:13004043-13005771 REVERSE LENGTH=277;; (*ITAG) Solyc05g016690.2.1 (e_value=4e-66) genomic_reference:SL2.40ch05 gene_region:17845583-17849239 transcript_region:SL2.40ch05:17845583..17849239- go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00000020g0003.1 protein AED:0.16 eAED:0.16 QI:930|1|1|1|0.33|0|4|558|56; (*GB) gi|16215471|emb|CAC82999.1| (e_value=2e-28) calcium-dependent protein kinase 3 [Nicotiana tabacum];; (*SWP) sp|Q38870|CDPK2_ARATH (e_value=3e-26) Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1;; (*TAIR) AT3G10660.1 (e_value=3e-27) | Symbols: CPK2, ATCPK2 | calmodulin-domain protein kinase cdpk isoform 2 | chr3:3331599-3334268 REVERSE LENGTH=646;; (*ITAG) Solyc11g006370.1.1 (e_value=9e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1080169-1085490 transcript_region:SL2.40ch11:1080169..1085490+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 3 (AHRD V1 **** Q93YF3_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00030738g0003.1 protein AED:0.06 eAED:0.06 QI:221|1|1|1|1|1|9|594|705; (*GB) gi|224096079|ref|XP_002310531.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAL8|PEK13_ARATH (e_value=4e-73) Proline-rich receptor-like protein kinase PERK13 OS=Arabidopsis thaliana GN=PERK13 PE=2 SV=1;; (*TAIR) AT5G63940.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:25588254-25591229 FORWARD LENGTH=705;; (*ITAG) Solyc01g068270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69799290-69803691 transcript_region:SL2.40ch01:69799290..69803691+ go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00054583g0002.1 protein AED:0.36 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|68; (*ITAG) Solyc07g053950.1.1 (e_value=1e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:59673972-59674514 transcript_region:SL2.40ch07:59673972..59674514- functional_description:"Unknown Protein (AHRD V1)"; NbS00054583g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|1616628|emb|CAA56643.1| (e_value=3e-66) sts15 [Solanum tuberosum];; (*SWP) sp|Q8GT41|PLA1_PLAAC (e_value=2e-23) Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1;; (*TAIR) AT5G46940.1 (e_value=3e-13) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:19058230-19058760 REVERSE LENGTH=176;; (*ITAG) Solyc01g088590.2.1 (e_value=5e-85) genomic_reference:SL2.40ch01 gene_region:75117950-75118668 transcript_region:SL2.40ch01:75117950..75118668- go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- A7IZL0_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00053679g0004.1 protein AED:0.19 eAED:0.19 QI:317|1|0.77|1|0.75|0.88|9|0|343; (*GB) gi|225440073|ref|XP_002282450.1| (e_value=4e-135) PREDICTED: transcription factor-like protein DPB [Vitis vinifera];; (*SWP) sp|Q9FNY2|DPB_ARATH (e_value=1e-118) Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1;; (*TAIR) AT5G03415.1 (e_value=1e-119) | Symbols: DPB, ATDPB | Transcription factor DP | chr5:842842-845200 FORWARD LENGTH=385;; (*ITAG) Solyc10g078430.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59571654-59579911 transcript_region:SL2.40ch10:59571654..59579911+ go_terms:GO:0003700,GO:0046982 functional_description:"Transcription factor Dp-1 (AHRD V1 **** B6UDG0_MAIZE); contains Interpro domain(s) IPR016556 Transcription factor DP, subgroup "; GO:0003700,GO:0046982 NbS00029904g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.87|0.66|1|1|0.88|9|0|796; (*GB) gi|225425842|ref|XP_002265505.1| (e_value=0.0) PREDICTED: lipoxygenase 6, choloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAG3|LOX6_ARATH (e_value=0.0) Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1;; (*TAIR) AT1G67560.1 (e_value=0.0) | Symbols: LOX6 | PLAT/LH2 domain-containing lipoxygenase family protein | chr1:25319926-25324117 FORWARD LENGTH=917;; (*ITAG) Solyc05g014790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8966270-8971035 transcript_region:SL2.40ch05:8966270..8971035- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** B9RMJ4_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00020771g0001.1 protein AED:0.26 eAED:0.27 QI:0|0.75|0.72|0.96|0.87|0.84|25|322|745; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*SWP) sp|P0A9H7|CFA_ECOLI (e_value=2e-24) Cyclopropane-fatty-acyl-phospholipid synthase OS=Escherichia coli (strain K12) GN=cfa PE=1 SV=2;; (*TAIR) AT3G23530.1 (e_value=0.0) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00020771g0009.1 protein AED:0.26 eAED:0.29 QI:0|0|0|0.66|0.5|0.33|3|0|183; (*ITAG) Solyc09g090530.2.1 (e_value=3e-40) genomic_reference:SL2.40ch09 gene_region:65377168-65379292 transcript_region:SL2.40ch09:65377168..65379292+ functional_description:"At1g04030 (Fragment) (AHRD V1 *-*- Q1W7K0_9SOLA)"; NbS00020771g0010.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|473; (*GB) gi|147791134|emb|CAN68016.1| (e_value=1e-115) hypothetical protein VITISV_025150 [Vitis vinifera];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=2e-52) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT4G14300.1 (e_value=2e-103) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:8231179-8232785 FORWARD LENGTH=411;; (*ITAG) Solyc09g090520.2.1 (e_value=1e-140) genomic_reference:SL2.40ch09 gene_region:65370536-65373745 transcript_region:SL2.40ch09:65370536..65373745- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00041141g0002.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|76; (*GB) gi|147837078|emb|CAN72480.1| (e_value=4e-14) hypothetical protein VITISV_019320 [Vitis vinifera];; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=2e-14) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT5G06100.1 (e_value=5e-15) | Symbols: MYB33, ATMYB33 | myb domain protein 33 | chr5:1838555-1839997 FORWARD LENGTH=451;; (*ITAG) Solyc07g054960.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60445125-60446521 transcript_region:SL2.40ch07:60445125..60446521- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00041141g0006.1 protein AED:0.08 eAED:0.12 QI:0|0.75|0.44|1|0.75|0.55|9|0|730; (*GB) gi|255571949|ref|XP_002526916.1| (e_value=0.0) phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=0.0) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc12g019880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:12065920-12068792 transcript_region:SL2.40ch12:12065920..12068792- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00041141g0005.1 protein AED:0.09 eAED:0.18 QI:21|0|0|1|0|0|4|0|343; (*GB) gi|381148024|gb|AFF60302.1| (e_value=4e-144) xyloglucanase-specific endoglucanase inhibitor [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=1e-35) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=5e-63) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079940.2.1 (e_value=1e-140) genomic_reference:SL2.40ch01 gene_region:71605615-71607811 transcript_region:SL2.40ch01:71605615..71607811- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00044895g0007.1 protein AED:0.34 eAED:0.34 QI:0|1|0.87|1|1|0.87|8|283|401; (*GB) gi|359495820|ref|XP_003635099.1| (e_value=0.0) PREDICTED: cysteine protease ATG4-like [Vitis vinifera];; (*SWP) sp|A2Q1V6|ATG4_MEDTR (e_value=2e-167) Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1;; (*TAIR) AT3G59950.1 (e_value=2e-161) | Symbols: | Peptidase family C54 protein | chr3:22144468-22146887 REVERSE LENGTH=477;; (*ITAG) Solyc01g006230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:853672-859412 transcript_region:SL2.40ch01:853672..859412+ go_terms:GO:0005515,GO:0004197 functional_description:"Cysteine protease (AHRD V1 **** A8NLD6_COPC7); contains Interpro domain(s) IPR005078 Peptidase C54 "; GO:0005515,GO:0004197 NbS00044895g0008.1 protein AED:0.12 eAED:0.25 QI:0|0|0|1|0|0|3|0|123; (*ITAG) Solyc01g006240.2.1 (e_value=3e-47) genomic_reference:SL2.40ch01 gene_region:860311-861340 transcript_region:SL2.40ch01:860311..861340- go_terms:GO:0005529 functional_description:"Myrosinase-binding protein-like At3g16440 (AHRD V1 **-* MB32_ARATH); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00013368g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.6|0.33|1|0.6|0.66|6|0|354; (*GB) gi|296083926|emb|CBI24314.3| (e_value=2e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12290.1 (e_value=4e-104) | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974374-3978066 REVERSE LENGTH=602;; (*ITAG) Solyc01g009030.2.1 (e_value=3e-160) genomic_reference:SL2.40ch01 gene_region:3025820-3038891 transcript_region:SL2.40ch01:3025820..3038891+ functional_description:"Nuclear control of ATPase protein (AHRD V1 *--- C9SK53_VERA1); contains Interpro domain(s) IPR013946 Nuclear control of ATP synthase 2 "; NbS00045350g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|394; (*GB) gi|224099625|ref|XP_002311555.1| (e_value=2e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=8e-68) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT2G01940.1 (e_value=1e-137) | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445;; (*ITAG) Solyc01g005060.2.1 (e_value=7e-158) genomic_reference:SL2.40ch01 gene_region:58680-61050 transcript_region:SL2.40ch01:58680..61050- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00025485g0005.1 protein AED:0.24 eAED:0.24 QI:223|0.77|0.7|1|0.55|0.5|10|0|209; (*GB) gi|356523306|ref|XP_003530281.1| (e_value=2e-86) PREDICTED: UPF0420 protein-like [Glycine max];; (*SWP) sp|Q86K80|U420_DICDI (e_value=3e-15) UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1;; (*TAIR) AT5G01510.1 (e_value=1e-80) | Symbols: RUS5 | Protein of unknown function, DUF647 | chr5:201702-205151 FORWARD LENGTH=509;; (*ITAG) Solyc09g005230.2.1 (e_value=1e-110) genomic_reference:SL2.40ch09 gene_region:175107-180103 transcript_region:SL2.40ch09:175107..180103- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; NbS00028148g0006.1 protein AED:0.18 eAED:0.18 QI:471|1|1|1|0.85|0.81|22|23|989; (*GB) gi|11066033|gb|AAG28426.1|AF194945_1 (e_value=0.0) cytosolic aconitase [Nicotiana tabacum];; (*SWP) sp|P49608|ACOC_CUCMA (e_value=0.0) Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1;; (*TAIR) AT2G05710.1 (e_value=0.0) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc12g005860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:490745-498964 transcript_region:SL2.40ch12:490745..498964- go_terms:GO:0008152 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_BACWK); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0008152 NbS00028148g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|3|0|213; (*GB) gi|357471259|ref|XP_003605914.1| (e_value=4e-74) Transparent testa 12 protein [Medicago truncatula];; (*SWP) sp|Q9LUH2|ALF5_ARATH (e_value=2e-23) MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=1e-72) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc12g005850.1.1 (e_value=4e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:481937-488981 transcript_region:SL2.40ch12:481937..488981- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00001907g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|149 NbS00001907g0115.1 protein AED:0.08 eAED:0.10 QI:115|1|0.66|1|1|1|6|0|451 NbS00001907g0118.1 protein AED:0.24 eAED:0.24 QI:0|1|0.9|1|1|1|10|383|385 NbS00001907g0117.1 protein AED:0.27 eAED:0.27 QI:125|0.66|0.42|0.85|0.16|0.42|7|0|765 NbS00001907g0121.1 protein AED:0.73 eAED:0.73 QI:17|0.33|0.25|0.5|1|0.75|4|0|80 NbS00001907g0125.1 protein AED:0.17 eAED:0.18 QI:284|1|0.66|1|0|0.66|3|0|465 NbS00017057g0008.1 protein AED:0.27 eAED:0.27 QI:562|1|0.8|1|0.25|0|5|461|193; (*GB) gi|296087592|emb|CBI34848.3| (e_value=3e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=2e-11) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G27550.1 (e_value=2e-48) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:10208010-10209899 REVERSE LENGTH=491;; (*ITAG) Solyc07g047900.2.1 (e_value=6e-79) genomic_reference:SL2.40ch07 gene_region:56430159-56433693 transcript_region:SL2.40ch07:56430159..56433693- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00017057g0002.1 protein AED:0.19 eAED:0.19 QI:76|1|0.5|1|1|0.5|2|0|358; (*GB) gi|359488819|ref|XP_002272340.2| (e_value=0.0) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Vitis vinifera];; (*SWP) sp|Q02527|MGAT3_RAT (e_value=9e-18) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT3G27540.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr3:10205489-10206888 FORWARD LENGTH=390;; (*ITAG) Solyc12g035470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25089211-25090913 transcript_region:SL2.40ch12:25089211..25090913+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7M6J9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00030716g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|86 NbS00037031g0004.1 protein AED:0.24 eAED:0.24 QI:234|1|1|1|1|1|3|55|287; (*GB) gi|225453740|ref|XP_002269833.1| (e_value=3e-141) PREDICTED: F-box protein PP2-A13 [Vitis vinifera];; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=1e-130) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=1e-131) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc01g091700.2.1 (e_value=1e-177) genomic_reference:SL2.40ch01 gene_region:77059070-77061042 transcript_region:SL2.40ch01:77059070..77061042+ go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00047365g0009.1 protein AED:0.08 eAED:0.08 QI:168|0.83|0.84|1|0.75|0.61|13|312|495; (*GB) gi|225441629|ref|XP_002282088.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit theta [Vitis vinifera];; (*SWP) sp|Q552J0|TCPQ_DICDI (e_value=0.0) T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1;; (*TAIR) AT3G03960.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:1024432-1027604 FORWARD LENGTH=549;; (*ITAG) Solyc01g088080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74678732-74687543 transcript_region:SL2.40ch01:74678732..74687543+ go_terms:GO:0042623,GO:0051082 functional_description:"T-complex protein theta subunit (AHRD V1 ***- A8IF08_CHLRE); contains Interpro domain(s) IPR012721 T-complex protein 1, theta subunit "; GO:0042623,GO:0051082 NbS00047365g0008.1 protein AED:0.21 eAED:0.22 QI:0|0.8|0.66|1|1|1|6|0|507; (*GB) gi|156763846|emb|CAO99125.1| (e_value=0.0) putative esterase [Nicotiana tabacum];; (*TAIR) AT5G13800.1 (e_value=0.0) | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-4454141 REVERSE LENGTH=484;; (*ITAG) Solyc01g088090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74688575-74691916 transcript_region:SL2.40ch01:74688575..74691916- go_terms:GO:0080124 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M5W5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080124 NbS00034193g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.88|0.8|1|0.88|0.8|10|0|743; (*GB) gi|225457879|ref|XP_002269753.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=3e-139) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc04g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00034193g0007.1 protein AED:0.15 eAED:0.23 QI:45|0|0|1|0|0|5|0|427; (*GB) gi|60327204|gb|AAX19025.1| (e_value=1e-112) Hcr2-p3 [Solanum pimpinellifolium];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-52) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05660.1 (e_value=2e-72) | Symbols: AtRLP33, RLP33 | receptor like protein 33 | chr3:1649258-1652001 REVERSE LENGTH=875;; (*ITAG) Solyc12g100030.1.1 (e_value=4e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65271557-65274358 transcript_region:SL2.40ch12:65271557..65274358+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00016938g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|91 NbS00016938g0011.1 protein AED:0.24 eAED:0.24 QI:297|0.25|0.4|1|0.5|0.4|5|0|738; (*GB) gi|359483710|ref|XP_002265582.2| (e_value=3e-156) PREDICTED: wall-associated receptor kinase 5-like [Vitis vinifera];; (*SWP) sp|Q9C9L5|WAKLH_ARATH (e_value=6e-105) Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1;; (*TAIR) AT1G69730.1 (e_value=5e-106) | Symbols: | Wall-associated kinase family protein | chr1:26228703-26231339 REVERSE LENGTH=792;; (*ITAG) Solyc07g007020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1807863-1812535 transcript_region:SL2.40ch07:1807863..1812535- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00019850g0008.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|1|1|2|0|222; (*GB) gi|170676236|gb|ACB30357.1| (e_value=1e-79) putative bZIP transcriptional activator [Capsicum annuum];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=6e-27) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=5e-28) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc06g060490.2.1 (e_value=4e-95) genomic_reference:SL2.40ch06 gene_region:34902984-34908825 transcript_region:SL2.40ch06:34902984..34908825- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00019850g0009.1 protein AED:0.10 eAED:0.13 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|224141719|ref|XP_002324212.1| (e_value=1e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT2G25770.2 (e_value=2e-53) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr2:10992987-10993490 FORWARD LENGTH=167;; (*ITAG) Solyc08g066420.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52265221-52265730 transcript_region:SL2.40ch08:52265221..52265730+ functional_description:"Lachrymatory-factor synthase (AHRD V1 ***- B6UBY7_MAIZE); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00033410g0002.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|93; (*GB) gi|225427810|ref|XP_002270504.1| (e_value=7e-56) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-18) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=1e-49) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc01g110570.2.1 (e_value=3e-58) genomic_reference:SL2.40ch01 gene_region:88986574-88987218 transcript_region:SL2.40ch01:88986574..88987218- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00007101g0011.1 protein AED:0.03 eAED:0.03 QI:402|1|1|1|0.69|0.85|14|808|895; (*GB) gi|359475950|ref|XP_002279319.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CTR1-like [Vitis vinifera];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=6e-112) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G11850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:3816632-3821024 REVERSE LENGTH=880;; (*ITAG) Solyc08g065250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50338759-50349315 transcript_region:SL2.40ch08:50338759..50349315+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7M4D4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004709 NbS00007101g0012.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.8|1|1|1|15|492|1014; (*GB) gi|3334200|sp|O49954.1|GCSP_SOLTU (e_value=0.0) RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor;; (*SWP) sp|O49954|GCSP_SOLTU (e_value=0.0) Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1;; (*TAIR) AT2G26080.1 (e_value=0.0) | Symbols: AtGLDP2, GLDP2 | glycine decarboxylase P-protein 2 | chr2:11109330-11113786 REVERSE LENGTH=1044;; (*ITAG) Solyc08g065220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50293331-50300381 transcript_region:SL2.40ch08:50293331..50300381+ go_terms:GO:0004375 functional_description:"Glycine dehydrogenase P protein (AHRD V1 **** Q6V9T1_ORYSJ); contains Interpro domain(s) IPR003437 Glycine cleavage system P-protein "; GO:0004375 NbS00007101g0013.1 protein AED:0.37 eAED:0.37 QI:0|1|0.33|1|1|1|3|0|214; (*GB) gi|224088842|ref|XP_002308564.1| (e_value=2e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|P51273|YCF36_PORPU (e_value=4e-23) Uncharacterized protein ycf36 OS=Porphyra purpurea GN=ycf36 PE=3 SV=1;; (*TAIR) AT5G11840.1 (e_value=2e-82) | Symbols: | Protein of unknown function (DUF1230) | chr5:3813610-3814805 REVERSE LENGTH=265;; (*ITAG) Solyc08g065260.2.1 (e_value=2e-129) genomic_reference:SL2.40ch08 gene_region:50351037-50355960 transcript_region:SL2.40ch08:50351037..50355960+ functional_description:"Ycf36 protein (AHRD V1 *-*- Q55866_SYNY3); contains Interpro domain(s) IPR009631 Protein of unknown function DUF1230 "; NbS00056458g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|222; (*GB) gi|255563945|ref|XP_002522972.1| (e_value=3e-122) ubiquitin-conjugating enzyme variant, putative [Ricinus communis];; (*SWP) sp|A6QLM0|TM189_BOVIN (e_value=1e-16) Transmembrane protein 189 OS=Bos taurus GN=TMEM189 PE=2 SV=1;; (*TAIR) AT4G27030.1 (e_value=8e-114) | Symbols: FAD4, FADA | fatty acid desaturase A | chr4:13571951-13572922 FORWARD LENGTH=323;; (*ITAG) Solyc07g064410.1.1 (e_value=4e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63807705-63808703 transcript_region:SL2.40ch07:63807705..63808703- functional_description:"Ubiquitin-conjugating enzyme-like protein (AHRD V1 *--- A4HBP2_LEIBR); contains Interpro domain(s) IPR019547 Kua-ubiquitin conjugating enzyme hybrid, localisation "; NbS00056458g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|0.66|1|1|3|0|179; (*GB) gi|255563941|ref|XP_002522970.1| (e_value=4e-105) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G27020.1 (e_value=2e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:13568604-13571381 REVERSE LENGTH=523;; (*ITAG) Solyc07g064440.2.1 (e_value=2e-108) genomic_reference:SL2.40ch07 gene_region:63821907-63828376 transcript_region:SL2.40ch07:63821907..63828376+ functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00031459g0006.1 protein AED:0.35 eAED:0.35 QI:200|1|1|1|0.75|0.6|5|268|113; (*GB) gi|28193048|emb|CAD58628.1| (e_value=2e-73) SUI1 protein [Coffea arabica];; (*SWP) sp|Q0D5W6|SUI1_ORYSJ (e_value=3e-72) Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1;; (*TAIR) AT4G27130.1 (e_value=8e-71) | Symbols: | Translation initiation factor SUI1 family protein | chr4:13604814-13605525 REVERSE LENGTH=113;; (*ITAG) Solyc07g064150.2.1 (e_value=9e-78) genomic_reference:SL2.40ch07 gene_region:63638382-63639895 transcript_region:SL2.40ch07:63638382..63639895+ go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00031744g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.87|0.88|1|0.81|0.82|17|494|783; (*GB) gi|225435195|ref|XP_002282009.1| (e_value=0.0) PREDICTED: vacuolar proton translocating ATPase 100 kDa subunit [Vitis vinifera];; (*SWP) sp|Q8AVM5|VPP1_XENLA (e_value=0.0) V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1;; (*TAIR) AT2G28520.1 (e_value=0.0) | Symbols: VHA-A1 | vacuolar proton ATPase A1 | chr2:12210026-12215532 FORWARD LENGTH=817;; (*ITAG) Solyc11g072530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52801154-52811218 transcript_region:SL2.40ch11:52801154..52811218+ go_terms:GO:0033177 functional_description:"V-type proton ATPase subunit a (AHRD V1 ***- VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0033177 NbS00031744g0001.1 protein AED:0.37 eAED:0.38 QI:158|0.75|0.77|1|1|1|9|0|333; (*GB) gi|267821836|gb|ACY79503.1| (e_value=7e-169) arogenate dehydratase 2 [Petunia x hybrida];; (*SWP) sp|Q9SSE7|AROD2_ARATH (e_value=1e-86) Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1;; (*TAIR) AT3G07630.2 (e_value=7e-88) | Symbols: ADT2 | arogenate dehydratase 2 | chr3:2435457-2437530 FORWARD LENGTH=381;; (*ITAG) Solyc11g072520.1.1 (e_value=8e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52792685-52798706 transcript_region:SL2.40ch11:52792685..52798706+ go_terms:GO:0008152,GO:0009094 functional_description:"Prephenate dehydratase (AHRD V1 ***- B7X943_HEVBR); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0008152,GO:0009094 NbS00037352g0005.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|197; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-24) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=5e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00037352g0006.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|0|0|3|0|131 NbS00006930g0021.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0|1|0.5|0.33|3|0|190; (*GB) gi|297737761|emb|CBI26962.3| (e_value=2e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01170.2 (e_value=4e-83) | Symbols: BAT1 | bidirectional amino acid transporter 1 | chr2:102364-104157 REVERSE LENGTH=437;; (*ITAG) Solyc05g008760.2.1 (e_value=9e-95) genomic_reference:SL2.40ch05 gene_region:2991698-2994463 transcript_region:SL2.40ch05:2991698..2994463- go_terms:GO:0016020 functional_description:"Amino acid permease (AHRD V1 ***- B6SYL4_MAIZE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00006930g0022.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.33|1|0.8|0.66|6|256|591; (*GB) gi|68300884|gb|AAY89374.1| (e_value=0.0) beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=0.0) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=0.0) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc09g091030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65730190-65735790 transcript_region:SL2.40ch09:65730190..65735790+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** E0AE02_SOLLC); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00006930g0019.1 protein AED:0.20 eAED:0.19 QI:153|1|0.83|1|0.8|0.83|6|428|455; (*GB) gi|225427065|ref|XP_002275168.1| (e_value=4e-149) PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q54NQ0|PSD13_DICDI (e_value=2e-64) 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1;; (*TAIR) AT4G19006.1 (e_value=3e-138) | Symbols: | Proteasome component (PCI) domain protein | chr4:10409349-10411347 REVERSE LENGTH=386;; (*ITAG) Solyc05g053140.2.1 (e_value=5e-155) genomic_reference:SL2.40ch05 gene_region:62417721-62424738 transcript_region:SL2.40ch05:62417721..62424738- go_terms:GO:0005515 functional_description:"26S proteasome non-ATPase regulatory subunit 13 (AHRD V1 ***- B6TA88_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00006930g0014.1 protein AED:0.17 eAED:0.19 QI:605|0|0.5|1|0|0|2|0|77 NbS00006930g0023.1 protein AED:0.20 eAED:0.20 QI:332|0.92|0.8|1|0.78|0.8|15|618|835; (*GB) gi|296088263|emb|CBI35771.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A2AH22|AMRA1_MOUSE (e_value=1e-28) Activating molecule in BECN1-regulated autophagy protein 1 OS=Mus musculus GN=Ambra1 PE=1 SV=1;; (*TAIR) AT1G04140.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr1:1075984-1080321 REVERSE LENGTH=790;; (*ITAG) Solyc05g053130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62380994-62396966 transcript_region:SL2.40ch05:62380994..62396966+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7K7B4_CYAP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00006930g0018.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|174; (*GB) gi|41619324|gb|AAS10076.1| (e_value=4e-19) MYB transcription factor [Arabidopsis thaliana];; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=4e-17) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT4G13480.1 (e_value=6e-21) | Symbols: AtMYB79, MYB79 | myb domain protein 79 | chr4:7836675-7837653 FORWARD LENGTH=261;; (*ITAG) Solyc05g053150.1.1 (e_value=4e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62426466-62427630 transcript_region:SL2.40ch05:62426466..62427630- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R074_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00042355g0004.1 protein AED:0.06 eAED:0.06 QI:288|0.5|0.6|1|0.25|0.4|5|351|164; (*GB) gi|147856607|emb|CAN82472.1| (e_value=1e-52) hypothetical protein VITISV_039788 [Vitis vinifera];; (*SWP) sp|Q5E971|TMEDA_BOVIN (e_value=1e-12) Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1;; (*TAIR) AT1G09580.1 (e_value=1e-50) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc11g013000.1.1 (e_value=1e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5850497-5854023 transcript_region:SL2.40ch11:5850497..5854023+ go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00048876g0007.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0|3|0|714; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=0.0) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=3e-144) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00009849g0025.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|490; (*GB) gi|388510290|gb|AFK43211.1| (e_value=2e-108) unknown [Lotus japonicus];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=6e-85) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT5G64790.1 (e_value=1e-95) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:25902713-25904559 FORWARD LENGTH=485;; (*ITAG) Solyc04g011730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4184455-4186832 transcript_region:SL2.40ch04:4184455..4186832- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00009849g0026.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0.66|0.25|4|0|554; (*GB) gi|148909961|gb|ABR18065.1| (e_value=8e-142) unknown [Picea sitchensis];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-119) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=2e-127) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc01g091920.2.1 (e_value=3e-127) genomic_reference:SL2.40ch01 gene_region:77214251-77216739 transcript_region:SL2.40ch01:77214251..77216739- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00009849g0024.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0.5|2|0|339; (*GB) gi|388510290|gb|AFK43211.1| (e_value=4e-73) unknown [Lotus japonicus];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=2e-58) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT4G17180.1 (e_value=6e-66) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:9646541-9648045 FORWARD LENGTH=475;; (*ITAG) Solyc04g011730.2.1 (e_value=3e-156) genomic_reference:SL2.40ch04 gene_region:4184455-4186832 transcript_region:SL2.40ch04:4184455..4186832- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00009849g0013.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|62241075|dbj|BAD93694.1| (e_value=2e-20) acyltransferase-like protein [Nicotiana tabacum];; (*ITAG) Solyc05g039950.1.1 (e_value=4e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:47480105-47482311 transcript_region:SL2.40ch05:47480105..47482311- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00009849g0022.1 protein AED:0.35 eAED:0.36 QI:471|0.95|0.91|1|0.56|0.62|24|0|645; (*GB) gi|350539637|ref|NP_001234742.1| (e_value=0.0) embryonic flower 2 [Solanum lycopersicum];; (*SWP) sp|Q8L6Y4|EMF2_ARATH (e_value=0.0) Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2;; (*TAIR) AT5G51230.1 (e_value=0.0) | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=631;; (*ITAG) Solyc03g093640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48624958-48655114 transcript_region:SL2.40ch03:48624958..48655114- go_terms:GO:0005515,GO:0003700 functional_description:"Polycomb group protein EMBRYONIC FLOWER 2 (AHRD V1 **-- EMF2_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00009849g0023.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|114; (*ITAG) Solyc04g011720.2.1 (e_value=8e-23) genomic_reference:SL2.40ch04 gene_region:4178949-4181437 transcript_region:SL2.40ch04:4178949..4181437- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00009849g0028.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|0|0|2|0|66; (*ITAG) Solyc09g059680.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00011933g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|0.6|1|1|5|335|183; (*GB) gi|298204564|emb|CBI23839.3| (e_value=1e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q90515|TMEDA_TAKRU (e_value=1e-16) Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1;; (*TAIR) AT1G57620.1 (e_value=9e-55) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:21342863-21344581 FORWARD LENGTH=212;; (*ITAG) Solyc10g045640.1.1 (e_value=4e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30428760-30438125 transcript_region:SL2.40ch10:30428760..30438125- go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00011933g0013.1 protein AED:0.17 eAED:0.17 QI:1|1|0.75|1|1|0.75|4|0|279; (*GB) gi|225448041|ref|XP_002273537.1| (e_value=1e-166) PREDICTED: uncharacterized protein LOC100246257 [Vitis vinifera];; (*TAIR) AT5G24690.1 (e_value=2e-146) | Symbols: | Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521;; (*ITAG) Solyc10g045620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30367528-30369544 transcript_region:SL2.40ch10:30367528..30369544- functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 ***- Q0INW6_ORYSJ)"; NbS00011933g0011.1 protein AED:0.16 eAED:0.34 QI:0|0|0|1|1|0.75|4|0|229; (*GB) gi|298204572|emb|CBI23847.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24690.1 (e_value=1e-26) | Symbols: | Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521;; (*ITAG) Solyc10g045630.1.1 (e_value=7e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30369672-30376590 transcript_region:SL2.40ch10:30369672..30376590- functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *-*- Q9FIR5_ARATH)"; NbS00027850g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|224104365|ref|XP_002313412.1| (e_value=2e-37) copper transporter [Populus trichocarpa];; (*SWP) sp|Q8GWP3|COPT6_ARATH (e_value=3e-29) Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1;; (*TAIR) AT2G26975.1 (e_value=2e-30) | Symbols: | Ctr copper transporter family | chr2:11512992-11513429 FORWARD LENGTH=145;; (*ITAG) Solyc10g084980.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63653579-63655433 transcript_region:SL2.40ch10:63653579..63655433- go_terms:GO:0016021 functional_description:"Copper transporter (AHRD V1 *-*- B9HC68_POPTR); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0016021 NbS00027850g0005.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|885; (*GB) gi|255539306|ref|XP_002510718.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G42550.1 (e_value=0.0) | Symbols: PMI1 | plastid movement impaired1 | chr1:15977131-15979734 FORWARD LENGTH=843;; (*ITAG) Solyc10g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:965024-971538 transcript_region:SL2.40ch10:965024..971538+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046916g0001.1 protein AED:0.30 eAED:0.31 QI:0|1|0.85|1|1|1|7|0|329; (*GB) gi|225459864|ref|XP_002285932.1| (e_value=1e-153) PREDICTED: uncharacterized protein LOC100247161 [Vitis vinifera];; (*TAIR) AT1G63610.1 (e_value=8e-136) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14910.1); Has 537 Blast hits to 411 proteins in 100 species: Archae - 0; Bacteria - 231; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink). | chr1:23583675-23585599 REVERSE LENGTH=340;; (*ITAG) Solyc04g082310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63614917-63618869 transcript_region:SL2.40ch04:63614917..63618869+ functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00046916g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.93|1|0.85|0.73|15|459|844; (*GB) gi|298111984|gb|ADI58371.1| (e_value=0.0) pentatricopeptide repeat-containing protein [Capsicum annuum];; (*SWP) sp|Q9SGQ6|PP126_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2;; (*TAIR) AT1G76280.3 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28617948-28622581 REVERSE LENGTH=801;; (*ITAG) Solyc04g082320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63619395-63628091 transcript_region:SL2.40ch04:63619395..63628091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7RNT7_CAPAN); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046916g0010.1 protein AED:0.21 eAED:0.21 QI:101|0.85|0.90|1|0.8|0.80|21|397|703; (*GB) gi|225457538|ref|XP_002270499.1| (e_value=0.0) PREDICTED: pre-rRNA-processing protein TSR1 homolog [Vitis vinifera];; (*SWP) sp|Q5XGY1|TSR1_XENLA (e_value=1e-108) Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1;; (*TAIR) AT1G42440.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). | chr1:15895528-15899939 REVERSE LENGTH=793;; (*ITAG) Solyc04g082330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63629294-63637973 transcript_region:SL2.40ch04:63629294..63637973- go_terms:GO:0005515 functional_description:"Pre-rRNA-processing protein TSR1 (AHRD V1 *-*- D0MZI1_PHYIN); contains Interpro domain(s) IPR007034 Protein of unknown function DUF663 "; GO:0005515 NbS00005787g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|255541005|ref|XP_002511567.1| (e_value=4e-21) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*ITAG) Solyc06g069900.2.1 (e_value=2e-23) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00005787g0005.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|6|0|418; (*GB) gi|356500447|ref|XP_003519043.1| (e_value=4e-166) PREDICTED: LOW QUALITY PROTEIN: protein kinase 2B, chloroplastic-like [Glycine max];; (*SWP) sp|O49840|APK2B_ARATH (e_value=7e-161) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=5e-162) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc12g077390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:56895545-56897576 transcript_region:SL2.40ch12:56895545..56897576- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005787g0006.1 protein AED:0.43 eAED:0.58 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|356508566|ref|XP_003523026.1| (e_value=5e-14) PREDICTED: sexual differentiation process protein isp7-like [Glycine max];; (*ITAG) Solyc06g069900.2.1 (e_value=9e-15) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00014154g0007.1 protein AED:0.35 eAED:0.35 QI:103|0.8|0.66|1|0.8|0.83|6|0|227; (*GB) gi|224119366|ref|XP_002318054.1| (e_value=5e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FM04|GDL88_ARATH (e_value=2e-117) GDSL esterase/lipase At5g62930 OS=Arabidopsis thaliana GN=At5g62930 PE=2 SV=3;; (*TAIR) AT5G62930.1 (e_value=1e-118) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:25254912-25256357 FORWARD LENGTH=242;; (*ITAG) Solyc06g071510.2.1 (e_value=5e-135) genomic_reference:SL2.40ch06 gene_region:40420011-40424876 transcript_region:SL2.40ch06:40420011..40424876+ go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6TVA2_MAIZE); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00013263g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.25|0.2|0.8|0.5|0.2|5|0|170; (*GB) gi|224108313|ref|XP_002314801.1| (e_value=4e-59) predicted protein [Populus trichocarpa];; (*TAIR) AT1G70900.1 (e_value=8e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23110.4); Has 57 Blast hits to 57 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26732456-26733637 FORWARD LENGTH=244;; (*ITAG) Solyc04g007730.2.1 (e_value=1e-65) genomic_reference:SL2.40ch04 gene_region:1405640-1410539 transcript_region:SL2.40ch04:1405640..1410539- functional_description:"Unknown Protein (AHRD V1)"; NbS00048016g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|394; (*GB) gi|225459193|ref|XP_002284024.1| (e_value=1e-101) PREDICTED: RING-H2 finger protein ATL11 [Vitis vinifera];; (*SWP) sp|Q84W40|ATL11_ARATH (e_value=3e-77) RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2;; (*TAIR) AT1G72200.1 (e_value=2e-78) | Symbols: | RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404;; (*ITAG) Solyc04g074820.1.1 (e_value=6e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58337260-58338441 transcript_region:SL2.40ch04:58337260..58338441+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024226g0003.1 protein AED:0.32 eAED:0.32 QI:220|1|1|1|0.2|0.16|6|387|195; (*GB) gi|224063359|ref|XP_002301111.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDK1|TRAD1_MOUSE (e_value=2e-25) TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1;; (*TAIR) AT1G09920.1 (e_value=9e-86) | Symbols: | TRAF-type zinc finger-related | chr1:3224863-3226860 REVERSE LENGTH=192;; (*ITAG) Solyc04g076670.2.1 (e_value=1e-129) genomic_reference:SL2.40ch04 gene_region:59151714-59156914 transcript_region:SL2.40ch04:59151714..59156914- go_terms:GO:0008270 functional_description:"TRAF type zinc finger domain containing 1 (AHRD V1 **-- B6T8M5_MAIZE); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00008818g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.71|0.85|0.66|0.57|7|351|625; (*GB) gi|350536717|ref|NP_001234773.1| (e_value=5e-146) WRKY72-like protein [Solanum lycopersicum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=3e-57) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=2e-58) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc06g070990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39985716-39990128 transcript_region:SL2.40ch06:39985716..39990128- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00018956g0019.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.14|0.85|0.83|0.85|7|0|1184; (*GB) gi|464380|sp|P33530.1|PHYA1_TOBAC (e_value=0.0) RecName: Full=Phytochrome A1;; (*SWP) sp|P33530|PHYA1_TOBAC (e_value=0.0) Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1;; (*TAIR) AT1G09570.1 (e_value=0.0) | Symbols: PHYA, FHY2, FRE1, HY8 | phytochrome A | chr1:3095498-3099216 REVERSE LENGTH=1122;; (*ITAG) Solyc10g044670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:22854459-22859333 transcript_region:SL2.40ch10:22854459..22859333+ go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome A"; GO:0042802,GO:0009883 NbS00018956g0018.1 protein AED:0.27 eAED:0.28 QI:0|0.43|0.29|0.94|0.62|0.58|17|162|1275; (*GB) gi|255555843|ref|XP_002518957.1| (e_value=2e-77) transporter, putative [Ricinus communis];; (*SWP) sp|P52948|NUP98_HUMAN (e_value=3e-23) Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4;; (*TAIR) AT1G10390.2 (e_value=5e-69) | Symbols: | Nucleoporin autopeptidase | chr1:3407265-3412045 REVERSE LENGTH=1041;; (*ITAG) Solyc02g093330.2.1 (e_value=9e-113) genomic_reference:SL2.40ch02 gene_region:48807406-48814692 transcript_region:SL2.40ch02:48807406..48814692+ go_terms:GO:0005215 functional_description:"Nup98 (Fragment) (AHRD V1 *--- A1YK38_DROME); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0005215 NbS00018956g0020.1 protein AED:0.42 eAED:0.44 QI:0|1|0|1|1|0|2|0|205; (*GB) gi|40949663|gb|AAR97545.1| (e_value=5e-123) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=7e-116) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT3G62020.1 (e_value=4e-102) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc01g102400.2.1 (e_value=5e-122) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00018956g0024.1 protein AED:0.45 eAED:0.61 QI:72|0|0|1|0|1|2|66|27 NbS00038244g0004.1 protein AED:0.12 eAED:0.12 QI:847|1|1|1|0.5|0.4|5|295|462; (*GB) gi|225449953|ref|XP_002271029.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(P)+] [Vitis vinifera];; (*SWP) sp|Q3V7H1|GPDA_ACIAD (e_value=2e-15) Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter sp. (strain ADP1) GN=gpsA PE=3 SV=1;; (*TAIR) AT2G41540.3 (e_value=0.0) | Symbols: GPDHC1 | 6-phosphogluconate dehydrogenase family protein | chr2:17326801-17328654 FORWARD LENGTH=462;; (*ITAG) Solyc01g088150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74757326-74761670 transcript_region:SL2.40ch01:74757326..74761670- go_terms:GO:0004367,GO:0051287 functional_description:"Glycerol-3-phosphate dehydrogenase-like protein (AHRD V1 **** Q8S2G5_ORYSJ); contains Interpro domain(s) IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004367,GO:0051287 NbS00042037g0004.1 protein AED:0.00 eAED:0.00 QI:131|1|1|1|1|1|3|100|222; (*GB) gi|225438505|ref|XP_002279024.1| (e_value=3e-82) PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera];; (*SWP) sp|Q9SVB7|WRK13_ARATH (e_value=6e-51) Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1;; (*TAIR) AT4G39410.1 (e_value=5e-52) | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding protein 13 | chr4:18332937-18334789 REVERSE LENGTH=304;; (*ITAG) Solyc04g051540.2.1 (e_value=9e-103) genomic_reference:SL2.40ch04 gene_region:49935987-49940182 transcript_region:SL2.40ch04:49935987..49940182- go_terms:GO:0045449 functional_description:"WRKY family transcription factor (AHRD V1 *-*- D7LBR5_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00003718g0005.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|1|1|2|0|78 NbS00003718g0001.1 protein AED:0.33 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|104; (*ITAG) Solyc12g044970.1.1 (e_value=3e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003718g0006.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|185; (*ITAG) Solyc06g050740.1.1 (e_value=9e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30014138-30015077 transcript_region:SL2.40ch06:30014138..30015077+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00037916g0013.1 protein AED:0.23 eAED:0.26 QI:0|0.75|0.6|1|0.5|0.6|5|436|316; (*GB) gi|225447787|ref|XP_002266344.1| (e_value=8e-59) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5-like [Vitis vinifera];; (*SWP) sp|P42777|GBF4_ARATH (e_value=5e-28) G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1;; (*TAIR) AT1G03970.1 (e_value=4e-29) | Symbols: GBF4 | G-box binding factor 4 | chr1:1018237-1019049 FORWARD LENGTH=270;; (*ITAG) Solyc01g104650.2.1 (e_value=4e-91) genomic_reference:SL2.40ch01 gene_region:84842345-84845885 transcript_region:SL2.40ch01:84842345..84845885+ go_terms:GO:0016563,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **** Q53UC6_WHEAT); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0010843 NbS00037916g0015.1 protein AED:0.26 eAED:0.27 QI:85|0.94|0.9|1|0.78|0.85|20|0|775; (*GB) gi|225461912|ref|XP_002265434.1| (e_value=0.0) PREDICTED: probable helicase DDB_G0274399-like [Vitis vinifera];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=0.0) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT4G15570.1 (e_value=0.0) | Symbols: MAA3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8893043-8898858 FORWARD LENGTH=818;; (*ITAG) Solyc01g104640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84828311-84840249 transcript_region:SL2.40ch01:84828311..84840249+ functional_description:"Helicase (AHRD V1 *--- D3B244_POLPA)"; NbS00037916g0017.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|0|0|3|0|403; (*GB) gi|225447791|ref|XP_002266605.1| (e_value=3e-133) PREDICTED: uncharacterized protein LOC100252142 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=3e-96) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc01g104660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84847443-84849446 transcript_region:SL2.40ch01:84847443..84849446- functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbC25737819g0004.1 protein AED:0.01 eAED:0.01 QI:186|1|1|1|0.5|0.33|3|110|200; (*GB) gi|313929929|gb|ADR83703.1| (e_value=3e-108) nicotinamidase [Nicotiana tabacum];; (*SWP) sp|P45743|DHBB_BACSU (e_value=5e-26) Isochorismatase OS=Bacillus subtilis (strain 168) GN=dhbB PE=1 SV=1;; (*TAIR) AT5G23230.1 (e_value=2e-98) | Symbols: NIC2 | nicotinamidase 2 | chr5:7826005-7826601 REVERSE LENGTH=198;; (*ITAG) Solyc01g007920.2.1 (e_value=2e-133) genomic_reference:SL2.40ch01 gene_region:2114064-2117367 transcript_region:SL2.40ch01:2114064..2117367+ go_terms:GO:0008152 functional_description:"Isochorismatase family protein (AHRD V1 ***- B5IAW4_ACIB4); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008152 NbS00027954g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0.8|1|0.5|0.8|5|660|236; (*GB) gi|359495710|ref|XP_003635067.1| (e_value=3e-98) PREDICTED: uncharacterized protein LOC100246768 isoform 1 [Vitis vinifera];; (*TAIR) AT1G11380.1 (e_value=8e-79) | Symbols: | PLAC8 family protein | chr1:3832695-3833921 FORWARD LENGTH=254;; (*ITAG) Solyc02g079390.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:38547493-38550058 transcript_region:SL2.40ch02:38547493..38550058- functional_description:"Uncharacterized Cys-rich domain (AHRD V1 **-- Q2HTU7_MEDTR); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00027954g0008.1 protein AED:0.26 eAED:0.26 QI:176|1|1|1|0|0.5|2|526|304; (*GB) gi|225469908|ref|XP_002272953.1| (e_value=0.0) PREDICTED: nitric oxide synthase-interacting protein [Vitis vinifera];; (*SWP) sp|Q6P829|NOSIP_XENTR (e_value=7e-43) Nitric oxide synthase-interacting protein OS=Xenopus tropicalis GN=nosip PE=2 SV=1;; (*TAIR) AT1G61620.1 (e_value=5e-158) | Symbols: | phosphoinositide binding | chr1:22737653-22739209 FORWARD LENGTH=310;; (*ITAG) Solyc02g079400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38554066-38556783 transcript_region:SL2.40ch02:38554066..38556783- go_terms:GO:0005515 functional_description:"Nitric oxide synthase interacting protein (AHRD V1 ***- B6TCA5_MAIZE); contains Interpro domain(s) IPR016818 Nitric oxide synthase-interacting "; GO:0005515 NbS00008163g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|0.5|0.33|3|0|169; (*GB) gi|297746213|emb|CBI16269.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|O32472|PHAJ_AERPU (e_value=2e-24) (R)-specific enoyl-CoA hydratase OS=Aeromonas punctata GN=phaJ PE=1 SV=1;; (*TAIR) AT5G60335.1 (e_value=2e-59) | Symbols: | Thioesterase superfamily protein | chr5:24273879-24274551 REVERSE LENGTH=166;; (*ITAG) Solyc06g075000.2.1 (e_value=8e-87) genomic_reference:SL2.40ch06 gene_region:42926032-42927908 transcript_region:SL2.40ch06:42926032..42927908+ go_terms:GO:0008152 functional_description:"MaoC-like dehydratase (AHRD V1 ***- A8JHQ8_CHLRE); contains Interpro domain(s) IPR002539 MaoC-like dehydratase "; GO:0008152 NbS00008163g0012.1 protein AED:0.09 eAED:0.09 QI:0|0.92|0.85|1|0.61|0.71|14|288|1091; (*GB) gi|224072546|ref|XP_002303777.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9FF46|AB28G_ARATH (e_value=0.0) ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1;; (*TAIR) AT5G60740.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr5:24425824-24430269 REVERSE LENGTH=1109;; (*ITAG) Solyc06g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42933238-42941877 transcript_region:SL2.40ch06:42933238..42941877+ go_terms:GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 28 (AHRD V1 ***- AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00008163g0009.1 protein AED:0.25 eAED:0.37 QI:0|0|0.5|1|1|1|2|75|153 NbS00008163g0010.1 protein AED:0.09 eAED:0.09 QI:186|0.87|0.88|1|1|1|9|300|633; (*GB) gi|359479362|ref|XP_002277357.2| (e_value=0.0) PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P21239|RUB1_BRANA (e_value=0.0) RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2;; (*TAIR) AT2G28000.1 (e_value=0.0) | Symbols: CPN60A, CH-CPN60A, SLP | chaperonin-60alpha | chr2:11926603-11929184 FORWARD LENGTH=586;; (*ITAG) Solyc06g075010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42927697-42932331 transcript_region:SL2.40ch06:42927697..42932331- go_terms:GO:0042623 functional_description:"chaperonin (AHRD V1 ***- B2IXD2_NOSP7); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0042623 NbS00031300g0006.1 protein AED:0.14 eAED:0.14 QI:109|1|1|1|0.78|0.86|15|0|353; (*GB) gi|225433446|ref|XP_002285679.1| (e_value=0.0) PREDICTED: probable DNA primase large subunit [Vitis vinifera];; (*SWP) sp|Q84WJ2|PRI2_ARATH (e_value=3e-175) Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2;; (*TAIR) AT1G67320.2 (e_value=3e-176) | Symbols: | DNA primase, large subunit family | chr1:25205520-25208966 REVERSE LENGTH=454;; (*ITAG) Solyc04g045530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:32864100-32873431 transcript_region:SL2.40ch04:32864100..32873431+ go_terms:GO:0003896 functional_description:"DNA primase large subunit (AHRD V1 **** B5X2T9_SALSA); contains Interpro domain(s) IPR016558 DNA primase, large subunit, eukaryotic "; GO:0003896 NbS00033188g0005.1 protein AED:0.13 eAED:0.13 QI:421|1|1|1|0.5|0.6|5|109|524; (*GB) gi|255538442|ref|XP_002510286.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=0.0) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc04g079560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61576505-61581504 transcript_region:SL2.40ch04:61576505..61581504+ go_terms:GO:0015171 functional_description:"Lysine/histidine transporter (AHRD V1 **** B9MVJ1_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00017272g0002.1 protein AED:0.35 eAED:0.35 QI:0|1|1|1|0.71|0.62|8|262|281; (*GB) gi|359491921|ref|XP_002273353.2| (e_value=1e-84) PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera];; (*SWP) sp|Q9I8B3|RB24B_XENLA (e_value=2e-33) RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1;; (*TAIR) AT1G76460.1 (e_value=2e-79) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28686932-28688506 REVERSE LENGTH=285;; (*ITAG) Solyc02g082270.2.1 (e_value=9e-172) genomic_reference:SL2.40ch02 gene_region:40551327-40555793 transcript_region:SL2.40ch02:40551327..40555793+ go_terms:GO:0008266 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00060161g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|357; (*GB) gi|63253080|dbj|BAD98314.1| (e_value=1e-159) peroxidase [Nicotiana tabacum];; (*SWP) sp|P12437|PERX_SOLTU (e_value=5e-153) Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT5G05340.1 (e_value=6e-63) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc02g079510.2.1 (e_value=4e-153) genomic_reference:SL2.40ch02 gene_region:38622413-38624805 transcript_region:SL2.40ch02:38622413..38624805- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q50LG4_TOBAC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00008957g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.85|0.62|1|0.71|0.87|8|0|722; (*GB) gi|255571949|ref|XP_002526916.1| (e_value=0.0) phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=0.0) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc10g078460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59606606-59609733 transcript_region:SL2.40ch10:59606606..59609733+ go_terms:GO:0016308,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308,GO:0046488 NbS00025126g0006.1 protein AED:0.20 eAED:0.20 QI:30|0.89|0.8|1|0.89|0.9|20|0|944; (*GB) gi|225432808|ref|XP_002279408.1| (e_value=0.0) PREDICTED: protein argonaute 10-like [Vitis vinifera];; (*SWP) sp|Q9XGW1|AGO10_ARATH (e_value=0.0) Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1;; (*TAIR) AT5G43810.2 (e_value=0.0) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc09g082830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63888767-63895211 transcript_region:SL2.40ch09:63888767..63895211- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00000377g0006.1 protein AED:0.13 eAED:0.13 QI:405|1|1|1|1|1|3|412|182; (*GB) gi|224078856|ref|XP_002305655.1| (e_value=3e-46) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q8GX77|FB316_ARATH (e_value=3e-32) F-box protein At1g61340 OS=Arabidopsis thaliana GN=At1g61340 PE=2 SV=1;; (*TAIR) AT1G61340.1 (e_value=2e-33) | Symbols: | F-box family protein | chr1:22628526-22629741 FORWARD LENGTH=185;; (*ITAG) Solyc10g005480.2.1 (e_value=2e-98) genomic_reference:SL2.40ch10 gene_region:353240-354912 transcript_region:SL2.40ch10:353240..354912- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000377g0005.1 protein AED:0.37 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|76 NbS00000377g0202.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|480 NbS00000377g0210.1 protein AED:0.02 eAED:0.02 QI:184|1|1|1|1|1|2|463|137 NbS00000377g0213.1 protein AED:0.06 eAED:0.08 QI:0|0.33|0|1|0.33|0.5|4|0|496 NbS00018051g0015.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|1|1|2|447|430; (*GB) gi|357518653|ref|XP_003629615.1| (e_value=1e-127) Microfibrillar-associated protein [Medicago truncatula];; (*SWP) sp|P55080|MFAP1_CHICK (e_value=2e-28) Microfibrillar-associated protein 1 OS=Gallus gallus GN=MFAP1 PE=2 SV=1;; (*TAIR) AT5G17900.1 (e_value=3e-111) | Symbols: | microfibrillar-associated protein-related | chr5:5925144-5926690 FORWARD LENGTH=435;; (*ITAG) Solyc01g100500.2.1 (e_value=1e-165) genomic_reference:SL2.40ch01 gene_region:82265025-82268871 transcript_region:SL2.40ch01:82265025..82268871- go_terms:GO:0005576 functional_description:"Microfibrillar-associated protein 1 (AHRD V1 *-*- C1BVS1_9MAXI); contains Interpro domain(s) IPR009730 Micro-fibrillar-associated 1, C-terminal "; GO:0005576 NbS00018051g0013.1 protein AED:0.01 eAED:0.01 QI:9|0.75|0.6|1|0.75|0.8|5|0|329; (*GB) gi|4589449|dbj|BAA76750.1| (e_value=0.0) KN1-type homeobox protein [Nicotiana tabacum];; (*SWP) sp|Q9FP29|KNOS1_ORYSJ (e_value=2e-94) Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1;; (*TAIR) AT1G70510.1 (e_value=7e-76) | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis thaliana 2 | chr1:26576635-26582145 FORWARD LENGTH=310;; (*ITAG) Solyc01g100510.2.1 (e_value=1e-145) genomic_reference:SL2.40ch01 gene_region:82275127-82279577 transcript_region:SL2.40ch01:82275127..82279577- go_terms:GO:0005515 functional_description:"Knotted-like homeobox protein (AHRD V1 ***- Q49RB7_POPTO); contains Interpro domain(s) IPR001356 Homeobox IPR005539 ELK IPR017970 Homeobox, conserved site "; GO:0005515 NbS00018051g0014.1 protein AED:0.57 eAED:0.64 QI:69|0|0.5|1|0|0|2|90|58 NbS00018051g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|317; (*GB) gi|27151627|sp|Q9XGI7.1|NAS_SOLLC (e_value=0.0) RecName: Full=Nicotianamine synthase; AltName: Full=Chloronerva; AltName: Full=S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase;; (*SWP) sp|Q9XGI7|NAS_SOLLC (e_value=0.0) Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1;; (*TAIR) AT1G09240.1 (e_value=6e-136) | Symbols: NAS3, ATNAS3 | nicotianamine synthase 3 | chr1:2984950-2985912 FORWARD LENGTH=320;; (*ITAG) Solyc01g100490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82262052-82263287 transcript_region:SL2.40ch01:82262052..82263287+ go_terms:GO:0030418 functional_description:"Nicotianamine synthase (AHRD V1 ***- A3DUI9_MALXI); contains Interpro domain(s) IPR004298 Nicotianamine synthase "; GO:0030418 NbS00058607g0003.1 protein AED:0.22 eAED:0.22 QI:21|1|0|1|1|1|3|0|608; (*GB) gi|1200256|emb|CAA62476.1| (e_value=0.0) stpk1 protein kinase [Solanum tuberosum];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=0.0) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT3G27580.2 (e_value=0.0) | Symbols: ATPK7 | Protein kinase superfamily protein | chr3:10217671-10219484 REVERSE LENGTH=578;; (*ITAG) Solyc02g093360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48831308-48835273 transcript_region:SL2.40ch02:48831308..48835273+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00032304g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.83|1|0.6|0.83|6|427|432; (*GB) gi|302144145|emb|CBI23250.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=9e-157) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT1G61900.3 (e_value=3e-159) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). | chr1:22882508-22884722 REVERSE LENGTH=429;; (*ITAG) Solyc03g031680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8424137-8428711 transcript_region:SL2.40ch03:8424137..8428711+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00008073g0004.1 protein AED:0.02 eAED:0.07 QI:0|0.5|0.42|1|0.66|0.71|7|0|780; (*GB) gi|225443962|ref|XP_002280109.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein C24H6.13-like [Vitis vinifera];; (*SWP) sp|Q03516|RSN1_YEAST (e_value=4e-16) Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1;; (*TAIR) AT1G30360.1 (e_value=0.0) | Symbols: ERD4 | Early-responsive to dehydration stress protein (ERD4) | chr1:10715892-10718799 FORWARD LENGTH=724;; (*ITAG) Solyc08g023440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16571646-16577518 transcript_region:SL2.40ch08:16571646..16577518- go_terms:GO:0016020 functional_description:"Early-responsive to dehydration 4 (AHRD V1 **-- D7KET4_ARALY); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00030519g0018.1 protein AED:0.02 eAED:0.05 QI:262|1|0.5|1|1|1|2|0|495; (*GB) gi|356533171|ref|XP_003535141.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100820136 [Glycine max];; (*TAIR) AT1G64890.1 (e_value=1e-165) | Symbols: | Major facilitator superfamily protein | chr1:24109752-24111165 FORWARD LENGTH=442;; (*ITAG) Solyc03g097310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53083768-53086379 transcript_region:SL2.40ch03:53083768..53086379+ go_terms:GO:0005215 functional_description:"Transporter folate-biopterin transporter (AHRD V1 **** B6TI36_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00030519g0019.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|156; (*GB) gi|255566058|ref|XP_002524017.1| (e_value=3e-53) transcription regulator, putative [Ricinus communis];; (*TAIR) AT5G17560.1 (e_value=1e-46) | Symbols: | BolA-like family protein | chr5:5788474-5789671 FORWARD LENGTH=177;; (*ITAG) Solyc03g097360.2.1 (e_value=2e-94) genomic_reference:SL2.40ch03 gene_region:53122339-53128233 transcript_region:SL2.40ch03:53122339..53128233+ functional_description:"BolA-like (AHRD V1 ***- Q67VQ4_ORYSJ); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00030519g0020.1 protein AED:0.17 eAED:0.17 QI:67|1|1|1|1|1|5|295|336; (*GB) gi|356508829|ref|XP_003523156.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100787932 [Glycine max];; (*TAIR) AT5G63530.2 (e_value=1e-58) | Symbols: ATFP3, FP3 | farnesylated protein 3 | chr5:25433423-25435614 FORWARD LENGTH=340;; (*ITAG) Solyc03g097380.2.1 (e_value=1e-79) genomic_reference:SL2.40ch03 gene_region:53164694-53166669 transcript_region:SL2.40ch03:53164694..53166669+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q7XG81_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00030519g0030.1 protein AED:0.02 eAED:0.02 QI:175|0.71|0.75|1|0.71|0.75|8|393|1038; (*GB) gi|225454589|ref|XP_002264216.1| (e_value=0.0) PREDICTED: DNA-binding protein SMUBP-2 [Vitis vinifera];; (*SWP) sp|P38935|SMBP2_HUMAN (e_value=8e-101) DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3;; (*TAIR) AT5G35970.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:14119060-14123078 REVERSE LENGTH=961;; (*ITAG) Solyc03g097370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53129345-53136544 transcript_region:SL2.40ch03:53129345..53136544- go_terms:GO:0043141 functional_description:"DNA helicase-like (AHRD V1 **** Q9FGC2_ARATH); contains Interpro domain(s) IPR003593 ATPase, AAA+ type, core "; GO:0043141 NbS00030519g0029.1 protein AED:0.25 eAED:0.28 QI:0|0.8|0.81|1|0.73|0.75|16|439|852; (*GB) gi|225454595|ref|XP_002267912.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240775 [Vitis vinifera];; (*SWP) sp|Q9P6P3|PPK15_SCHPO (e_value=9e-109) Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1;; (*TAIR) AT5G35980.1 (e_value=0.0) | Symbols: YAK1 | yeast YAK1-related gene 1 | chr5:14128551-14135984 FORWARD LENGTH=956;; (*ITAG) Solyc03g097350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53098342-53117767 transcript_region:SL2.40ch03:53098342..53117767- go_terms:GO:0016301 functional_description:"Kinase family protein (AHRD V1 **** D7MHY5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00030519g0003.1 protein AED:0.33 eAED:0.33 QI:406|0.85|0.87|1|0.57|0.62|8|607|230; (*GB) gi|6682869|dbj|BAA88921.1| (e_value=6e-134) sigma factor [Nicotiana tabacum];; (*TAIR) AT1G64860.1 (e_value=1e-43) | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502;; (*ITAG) Solyc03g097320.2.1 (e_value=3e-113) genomic_reference:SL2.40ch03 gene_region:53086650-53091036 transcript_region:SL2.40ch03:53086650..53091036- go_terms:GO:0005515 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 ***- B0C890_ACAM1); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0005515 NbS00033288g0003.1 protein AED:0.36 eAED:0.36 QI:158|1|0.66|1|1|1|3|0|356; (*GB) gi|113205160|gb|ABI34275.1| (e_value=1e-101) hypothetical protein LES1_20t00015 [Solanum lycopersicum];; (*SWP) sp|O95628|CNOT4_HUMAN (e_value=7e-11) CCR4-NOT transcription complex subunit 4 OS=Homo sapiens GN=CNOT4 PE=1 SV=3;; (*TAIR) AT5G62910.1 (e_value=2e-55) | Symbols: | RING/U-box superfamily protein | chr5:25250830-25252015 FORWARD LENGTH=327;; (*ITAG) Solyc03g113700.2.1 (e_value=2e-129) genomic_reference:SL2.40ch03 gene_region:57821433-57823256 transcript_region:SL2.40ch03:57821433..57823256+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00053625g0005.1 protein AED:0.27 eAED:0.27 QI:214|1|1|1|1|1|5|354|219; (*GB) gi|255557303|ref|XP_002519682.1| (e_value=2e-110) Calcyclin-binding protein, putative [Ricinus communis];; (*SWP) sp|Q6AYK6|CYBP_RAT (e_value=1e-24) Calcyclin-binding protein OS=Rattus norvegicus GN=Cacybp PE=1 SV=1;; (*TAIR) AT1G30070.1 (e_value=4e-101) | Symbols: | SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=222;; (*ITAG) Solyc08g016670.2.1 (e_value=2e-131) genomic_reference:SL2.40ch08 gene_region:8356898-8360520 transcript_region:SL2.40ch08:8356898..8360520+ go_terms:GO:0042803 functional_description:"Calcyclin-binding protein (AHRD V1 ***- B4FGY0_MAIZE); contains Interpro domain(s) IPR007699 SGS "; GO:0042803 NbS00053625g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|78; (*GB) gi|255557281|ref|XP_002519671.1| (e_value=2e-13) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G34585.1 (e_value=3e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14568227-14568472 REVERSE LENGTH=81;; (*ITAG) Solyc02g070470.1.1 (e_value=1e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34792055-34792288 transcript_region:SL2.40ch02:34792055..34792288- functional_description:"Unknown Protein (AHRD V1)"; NbS00021674g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.5|1|0.8|0.66|6|0|570; (*GB) gi|283131246|dbj|BAI63295.1| (e_value=0.0) double WRKY type transfactor [Nicotiana benthamiana];; (*SWP) sp|Q8S8P5|WRK33_ARATH (e_value=5e-119) Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2;; (*TAIR) AT2G38470.1 (e_value=4e-120) | Symbols: WRKY33, ATWRKY33 | WRKY DNA-binding protein 33 | chr2:16108476-16110539 FORWARD LENGTH=519;; (*ITAG) Solyc09g014990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7395473-7398361 transcript_region:SL2.40ch09:7395473..7398361+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY-like transcription factor (AHRD V1 **** Q06B53_SOLPE); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00021674g0006.1 protein AED:0.75 eAED:1.00 QI:0|0|0|0.66|0|0|3|0|187 NbS00026695g0008.1 protein AED:0.27 eAED:0.27 QI:570|0.6|0.66|1|0.8|0.66|6|0|467; (*GB) gi|224133996|ref|XP_002327730.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5Z8P0|P2C60_ORYSJ (e_value=0.0) Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1;; (*TAIR) AT3G51370.1 (e_value=9e-178) | Symbols: | Protein phosphatase 2C family protein | chr3:19070054-19071975 FORWARD LENGTH=379;; (*ITAG) Solyc03g033340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9193147-9197708 transcript_region:SL2.40ch03:9193147..9197708- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B6SYG9_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00026695g0007.1 protein AED:0.11 eAED:0.11 QI:225|1|1|1|0.66|1|4|616|239; (*GB) gi|301070456|gb|ADK55590.1| (e_value=3e-132) plastid NEP interaction protein [Nicotiana benthamiana];; (*SWP) sp|Q8GT75|NIP1_ARATH (e_value=3e-113) NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2;; (*TAIR) AT4G35840.1 (e_value=2e-114) | Symbols: | RING/U-box superfamily protein | chr4:16981083-16982266 FORWARD LENGTH=236;; (*ITAG) Solyc03g033330.2.1 (e_value=2e-136) genomic_reference:SL2.40ch03 gene_region:9190493-9193073 transcript_region:SL2.40ch03:9190493..9193073+ go_terms:GO:0005515 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00026695g0006.1 protein AED:0.34 eAED:0.47 QI:0|0|0|0.66|1|1|3|0|300; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=5e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00033380g0001.1 protein AED:0.04 eAED:0.08 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|224115672|ref|XP_002332114.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|O23624|FPF1_ARATH (e_value=4e-29) Flowering-promoting factor 1 OS=Arabidopsis thaliana GN=FPF1 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=3e-30) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066950.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:67624735-67625055 transcript_region:SL2.40ch01:67624735..67625055- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00027688g0014.1 protein AED:0.18 eAED:0.18 QI:0|0.4|0.16|1|0.6|0.66|6|350|658; (*GB) gi|225457188|ref|XP_002280600.1| (e_value=0.0) PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=3e-41) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT1G27210.1 (e_value=3e-113) | Symbols: | ARM repeat superfamily protein | chr1:9455669-9457917 REVERSE LENGTH=625;; (*ITAG) Solyc03g113680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57797860-57801879 transcript_region:SL2.40ch03:57797860..57801879- go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 **-- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00027688g0003.1 protein AED:0.48 eAED:0.55 QI:76|1|0.5|1|0|0|2|0|74; (*GB) gi|350535903|ref|NP_001234731.1| (e_value=1e-22) 5-formyltetrahydrofolate cycloligase [Solanum lycopersicum];; (*TAIR) AT5G13050.2 (e_value=7e-24) | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase | chr5:4137262-4138711 REVERSE LENGTH=214;; (*ITAG) Solyc03g113590.2.1 (e_value=3e-25) genomic_reference:SL2.40ch03 gene_region:57721492-57728469 transcript_region:SL2.40ch03:57721492..57728469- go_terms:GO:0030272 functional_description:"5-formyltetrahydrofolate cyclo-ligase (AHRD V1 **** B9I331_POPTR); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0030272 NbS00027688g0016.1 protein AED:0.05 eAED:0.05 QI:17|0.66|0.25|1|0.33|0.5|4|0|603; (*GB) gi|255540837|ref|XP_002511483.1| (e_value=0.0) hypothetical protein RCOM_1512920 [Ricinus communis];; (*TAIR) AT1G74830.1 (e_value=1e-143) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc03g113600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57730078-57733020 transcript_region:SL2.40ch03:57730078..57733020+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00001386g0008.1 protein AED:0.10 eAED:0.10 QI:245|0.85|0.6|1|0.71|0.73|15|0|1650; (*GB) gi|147788261|emb|CAN65296.1| (e_value=0.0) hypothetical protein VITISV_042325 [Vitis vinifera];; (*SWP) sp|P34756|FAB1_YEAST (e_value=4e-64) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT1G34260.1 (e_value=1e-169) | Symbols: FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A | chr1:12485967-12491799 FORWARD LENGTH=1456;; (*ITAG) Solyc11g013830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7245429-7255518 transcript_region:SL2.40ch11:7245429..7255518+ go_terms:GO:0016308,GO:0035091 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 *-** D7KK53_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0016308,GO:0035091 NbS00001581g0012.1 protein AED:0.09 eAED:0.10 QI:0|1|0.6|1|0.75|0.8|5|0|220; (*GB) gi|242044476|ref|XP_002460109.1| (e_value=3e-117) hypothetical protein SORBIDRAFT_02g022890 [Sorghum bicolor];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=2e-114) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=2e-115) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc01g010770.2.1 (e_value=2e-135) genomic_reference:SL2.40ch01 gene_region:5825560-5828696 transcript_region:SL2.40ch01:5825560..5828696- go_terms:GO:0005515 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00001581g0008.1 protein AED:0.16 eAED:0.16 QI:431|0.83|0.85|1|1|1|7|514|504; (*GB) gi|359473277|ref|XP_003631281.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Vitis vinifera];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001581g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.66|1|1|1|6|0|270; (*GB) gi|161788874|dbj|BAF95071.1| (e_value=4e-156) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42056|VDAC2_SOLTU (e_value=2e-152) Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=1e-110) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc01g010760.2.1 (e_value=4e-151) genomic_reference:SL2.40ch01 gene_region:5821504-5825600 transcript_region:SL2.40ch01:5821504..5825600+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00049483g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|13492674|gb|AAK28303.1|AF346431_1 (e_value=0.0) phenylpropanoid:glucosyltransferase 1, partial [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=7e-128) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=4e-113) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=2e-168) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00049483g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|213; (*GB) gi|13492674|gb|AAK28303.1|AF346431_1 (e_value=1e-143) phenylpropanoid:glucosyltransferase 1, partial [Nicotiana tabacum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=4e-70) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=6e-67) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=4e-130) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00006506g0017.1 protein AED:0.30 eAED:0.43 QI:0|0|0.5|1|0.66|0.5|4|0|174; (*GB) gi|255547401|ref|XP_002514758.1| (e_value=7e-44) membrane associated ring finger 1,8, putative [Ricinus communis];; (*TAIR) AT3G47550.1 (e_value=3e-38) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr3:17523841-17524942 FORWARD LENGTH=232;; (*ITAG) Solyc06g069780.2.1 (e_value=1e-60) genomic_reference:SL2.40ch06 gene_region:39845997-39849671 transcript_region:SL2.40ch06:39845997..39849671+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00006506g0016.1 protein AED:0.10 eAED:0.10 QI:259|1|1|1|0.66|0.5|4|315|176; (*GB) gi|359478760|ref|XP_003632167.1| (e_value=3e-78) PREDICTED: ataxin-7-like protein 3-like [Vitis vinifera];; (*TAIR) AT5G58575.1 (e_value=7e-65) | Symbols: | CONTAINS InterPro DOMAIN/s: Sgf11, transcriptional regulation (InterPro:IPR013246); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23674399-23675224 FORWARD LENGTH=181;; (*ITAG) Solyc06g082160.2.1 (e_value=1e-90) genomic_reference:SL2.40ch06 gene_region:44360379-44364956 transcript_region:SL2.40ch06:44360379..44364956- functional_description:"SAGA-associated factor 11 homolog (AHRD V1 *-*- SGF11_ANOGA); contains Interpro domain(s) IPR013246 Sgf11, transcriptional regulation "; NbS00006506g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|225434506|ref|XP_002278362.1| (e_value=3e-92) PREDICTED: uncharacterized protein At5g39865 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=6e-38) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G58530.1 (e_value=5e-69) | Symbols: | Glutaredoxin family protein | chr5:23660428-23661249 FORWARD LENGTH=273;; (*ITAG) Solyc06g082180.1.1 (e_value=3e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44376262-44377026 transcript_region:SL2.40ch06:44376262..44377026- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7MQE6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00006506g0018.1 protein AED:0.30 eAED:0.30 QI:133|1|0.66|1|0|0.66|3|0|103; (*GB) gi|16516823|emb|CAD10105.1| (e_value=3e-54) Gip1-like protein [Petunia x hybrida];; (*SWP) sp|Q6NMQ7|GASA6_ARATH (e_value=7e-42) Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1;; (*TAIR) AT1G74670.1 (e_value=5e-43) | Symbols: | Gibberellin-regulated family protein | chr1:28053378-28053893 FORWARD LENGTH=101;; (*ITAG) Solyc03g116060.2.1 (e_value=1e-57) genomic_reference:SL2.40ch03 gene_region:59623782-59625317 transcript_region:SL2.40ch03:59623782..59625317- functional_description:"Gibberellin-regulated protein (AHRD V1 **-- B4UW77_ARAHY); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; NbS00004442g0001.1 protein AED:0.14 eAED:0.14 QI:240|1|0.66|1|0.5|0.33|3|0|630; (*GB) gi|224144920|ref|XP_002325462.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT5G36100.1 (e_value=3e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65090.3); Has 57 Blast hits to 49 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:14191711-14193654 REVERSE LENGTH=295;; (*ITAG) Solyc04g051280.2.1 (e_value=5e-163) genomic_reference:SL2.40ch04 gene_region:49423099-49426805 transcript_region:SL2.40ch04:49423099..49426805- functional_description:"F16G16.9 protein (Fragment) (AHRD V1 *-*- Q9SS51_ARATH)"; NbS00004442g0005.1 protein AED:0.29 eAED:0.44 QI:0|0|0|1|0|0|2|0|130; (*ITAG) Solyc04g050030.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00015854g0020.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|1|0.5|0.66|3|0|188; (*GB) gi|255565693|ref|XP_002523836.1| (e_value=3e-128) Vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|Q9FMR5|VA714_ARATH (e_value=2e-121) Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1;; (*TAIR) AT5G22360.1 (e_value=1e-122) | Symbols: ATVAMP714, VAMP714 | vesicle-associated membrane protein 714 | chr5:7404379-7405654 REVERSE LENGTH=221;; (*ITAG) Solyc06g074250.2.1 (e_value=4e-131) genomic_reference:SL2.40ch06 gene_region:42290491-42294509 transcript_region:SL2.40ch06:42290491..42294509- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7C (AHRD V1 **-- D7MAR2_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00015854g0014.1 protein AED:0.21 eAED:0.25 QI:307|0.5|0.54|0.90|0.6|0.72|11|0|600; (*GB) gi|255565701|ref|XP_002523840.1| (e_value=9e-164) expressed protein, putative [Ricinus communis];; (*SWP) sp|Q3U2S4|OTUD5_MOUSE (e_value=4e-51) OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2;; (*TAIR) AT2G27350.2 (e_value=3e-130) | Symbols: | OTU-like cysteine protease family protein | chr2:11699780-11702363 REVERSE LENGTH=505;; (*ITAG) Solyc06g074220.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42278140-42285465 transcript_region:SL2.40ch06:42278140..42285465- functional_description:"OTU domain containing protein (AHRD V1 *-*- D3BI79_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00015854g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|325516278|gb|ADZ24717.1| (e_value=8e-134) lycopene b-cyclase [Solanum pennellii];; (*SWP) sp|Q9M424|NXS_SOLTU (e_value=3e-134) Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1;; (*TAIR) AT3G10230.2 (e_value=3e-86) | Symbols: LYC | lycopene cyclase | chr3:3164340-3165449 REVERSE LENGTH=369;; (*ITAG) Solyc06g074240.1.1 (e_value=2e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:42288127-42289623 transcript_region:SL2.40ch06:42288127..42289623- go_terms:GO:0016117 functional_description:"Chromoplast-specific lycopene beta-cyclase"; GO:0016117 NbS00015854g0006.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|105; (*GB) gi|225464888|ref|XP_002273638.1| (e_value=4e-22) PREDICTED: casparian strip membrane protein VIT_06s0080g00840 [Vitis vinifera];; (*SWP) sp|A7QF77|CASP1_VITVI (e_value=1e-23) Casparian strip membrane protein VIT_06s0080g00840 OS=Vitis vinifera GN=VIT_06s0080g00840 PE=2 SV=1;; (*TAIR) AT2G36100.1 (e_value=5e-21) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206;; (*ITAG) Solyc06g074230.2.1 (e_value=4e-29) genomic_reference:SL2.40ch06 gene_region:42286087-42287160 transcript_region:SL2.40ch06:42286087..42287160- functional_description:"UPF0497 membrane protein 1 (AHRD V1 ***- U4971_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00004063g0002.1 protein AED:0.20 eAED:0.21 QI:487|1|0.5|1|0|0.5|2|0|436; (*GB) gi|255541766|ref|XP_002511947.1| (e_value=0.0) Protein UNUSUAL FLORAL ORGANS, putative [Ricinus communis];; (*SWP) sp|Q9M310|FBK77_ARATH (e_value=0.0) F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1;; (*TAIR) AT3G61590.2 (e_value=0.0) | Symbols: HWS | Galactose oxidase/kelch repeat superfamily protein | chr3:22792914-22794149 FORWARD LENGTH=411;; (*ITAG) Solyc01g095370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78411389-78412809 transcript_region:SL2.40ch01:78411389..78412809+ go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9I8S9_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00004063g0004.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|209 NbS00055742g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0.66|0.75|4|0|337; (*GB) gi|187942401|gb|ACD40009.1| (e_value=0.0) SBP1 [Nicotiana alata];; (*TAIR) AT1G45976.1 (e_value=4e-120) | Symbols: SBP1 | S-ribonuclease binding protein 1 | chr1:17199371-17200680 FORWARD LENGTH=325;; (*ITAG) Solyc04g078760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61012052-61014556 transcript_region:SL2.40ch04:61012052..61014556+ go_terms:GO:0008270 functional_description:"Protein binding protein (AHRD V1 ***- D7KWR9_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00054694g0005.1 protein AED:0.11 eAED:0.11 QI:177|1|0|1|1|1|2|0|323; (*GB) gi|224094697|ref|XP_002310201.1| (e_value=2e-119) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A43|BEH2_ARATH (e_value=4e-85) BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1;; (*TAIR) AT1G19350.3 (e_value=2e-81) | Symbols: BES1, BZR2 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:6688680-6690165 FORWARD LENGTH=357;; (*ITAG) Solyc02g063010.2.1 (e_value=1e-148) genomic_reference:SL2.40ch02 gene_region:29608266-29610489 transcript_region:SL2.40ch02:29608266..29610489- go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00015867g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0.33|0.25|4|0|145; (*GB) gi|118485882|gb|ABK94787.1| (e_value=2e-26) unknown [Populus trichocarpa];; (*SWP) sp|Q949S5|P2B11_ARATH (e_value=1e-21) F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1;; (*TAIR) AT1G80110.1 (e_value=9e-23) | Symbols: ATPP2-B11, PP2-B11 | phloem protein 2-B11 | chr1:30135466-30136767 FORWARD LENGTH=257;; (*ITAG) Solyc10g051160.1.1 (e_value=1e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:47126920-47127962 transcript_region:SL2.40ch10:47126920..47127962+ go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00003965g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|445; (*GB) gi|356500248|ref|XP_003518945.1| (e_value=8e-179) PREDICTED: uncharacterized protein LOC100807134 [Glycine max];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=2e-18) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT4G03100.1 (e_value=1e-168) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr4:1374361-1375913 FORWARD LENGTH=430;; (*ITAG) Solyc09g074340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61638622-61643762 transcript_region:SL2.40ch09:61638622..61643762+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00003965g0007.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0|0|2|0|525; (*GB) gi|225436831|ref|XP_002270535.1| (e_value=0.0) PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Vitis vinifera];; (*SWP) sp|Q5F3D7|UTP15_CHICK (e_value=2e-94) U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus GN=UTP15 PE=2 SV=1;; (*TAIR) AT2G47990.1 (e_value=0.0) | Symbols: SWA1, EDA13, EDA19 | transducin family protein / WD-40 repeat family protein | chr2:19637010-19638602 REVERSE LENGTH=530;; (*ITAG) Solyc05g010480.2.1 (e_value=2e-152) genomic_reference:SL2.40ch05 gene_region:4709782-4711597 transcript_region:SL2.40ch05:4709782..4711597- go_terms:GO:0030515 functional_description:"U3 small nucleolar RNA-associated protein 15 homolog (AHRD V1 **-- B5X2W0_SALSA); contains Interpro domain(s) IPR018983 U3 small nucleolar RNA-associated protein 15, C-terminal "; GO:0030515 NbS00015069g0016.1 protein AED:0.20 eAED:0.20 QI:0|0.25|0|1|0.25|0.6|5|0|216; (*GB) gi|225442747|ref|XP_002284968.1| (e_value=1e-102) PREDICTED: gibberellin 20 oxidase 3 [Vitis vinifera];; (*SWP) sp|Q39111|GAOX2_ARATH (e_value=1e-19) Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1;; (*TAIR) AT1G52820.1 (e_value=2e-88) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19669216-19670321 FORWARD LENGTH=317;; (*ITAG) Solyc06g066830.2.1 (e_value=4e-115) genomic_reference:SL2.40ch06 gene_region:38417340-38419231 transcript_region:SL2.40ch06:38417340..38419231- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL08_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00015069g0014.1 protein AED:0.25 eAED:0.25 QI:178|1|1|1|0|0|2|0|113; (*GB) gi|15219097|ref|NP_175689.1| (e_value=5e-31) oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana];; (*TAIR) AT1G52800.1 (e_value=1e-33) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067860.2.1 (e_value=2e-60) genomic_reference:SL2.40ch06 gene_region:38448249-38449744 transcript_region:SL2.40ch06:38448249..38449744- go_terms:GO:0016706 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 **** Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00015069g0012.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|210; (*GB) gi|378747452|gb|AFC36356.1| (e_value=4e-56) 2-oxoglutarate-dependent dioxygenase [Salvia miltiorrhiza];; (*SWP) sp|P54928|IMP3_SOLLC (e_value=2e-13) Inositol monophosphatase 3 OS=Solanum lycopersicum GN=IMP3 PE=2 SV=1;; (*TAIR) AT1G52790.1 (e_value=3e-41) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19662194-19663301 REVERSE LENGTH=310;; (*ITAG) Solyc06g067870.2.1 (e_value=2e-75) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00015069g0015.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|77; (*GB) gi|225442757|ref|XP_002280670.1| (e_value=4e-22) PREDICTED: gibberellin 3-beta-dioxygenase 3 [Vitis vinifera];; (*TAIR) AT1G52800.1 (e_value=3e-23) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067860.2.1 (e_value=3e-42) genomic_reference:SL2.40ch06 gene_region:38448249-38449744 transcript_region:SL2.40ch06:38448249..38449744- go_terms:GO:0016706 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 **** Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00009449g0002.1 protein AED:0.34 eAED:0.34 QI:103|1|0.8|1|1|1|5|0|181; (*GB) gi|10799832|emb|CAC12883.1| (e_value=7e-120) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42795|RL111_ARATH (e_value=6e-118) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2;; (*TAIR) AT2G42740.1 (e_value=4e-119) | Symbols: RPL16A | ribosomal protein large subunit 16A | chr2:17791794-17792946 FORWARD LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=5e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00009449g0001.1 protein AED:0.00 eAED:0.00 QI:332|1|0.5|1|0|0.5|2|0|481; (*GB) gi|225454807|ref|XP_002274300.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915-like [Vitis vinifera];; (*SWP) sp|P0C043|PP318_ARATH (e_value=1e-166) Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1;; (*TAIR) AT5G46680.1 (e_value=4e-151) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:18941118-18942524 FORWARD LENGTH=468;; (*ITAG) Solyc07g055220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60656922-60658304 transcript_region:SL2.40ch07:60656922..60658304- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRB7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009449g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|224117972|ref|XP_002331526.1| (e_value=2e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01840.1 (e_value=5e-14) | Symbols: ATOFP1, OFP1 | ovate family protein 1 | chr5:324552-325364 FORWARD LENGTH=270;; (*ITAG) Solyc07g055240.1.1 (e_value=4e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60663461-60663967 transcript_region:SL2.40ch07:60663461..60663967- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00029032g0001.1 protein AED:0.33 eAED:0.33 QI:74|0.66|0.5|0.75|1|1|4|0|272; (*GB) gi|359473357|ref|XP_002269530.2| (e_value=1e-58) PREDICTED: uncharacterized protein LOC100255052 [Vitis vinifera];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-15) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT1G69580.1 (e_value=7e-40) | Symbols: | Homeodomain-like superfamily protein | chr1:26172127-26173612 FORWARD LENGTH=336;; (*ITAG) Solyc05g007890.2.1 (e_value=1e-94) genomic_reference:SL2.40ch05 gene_region:2340432-2342446 transcript_region:SL2.40ch05:2340432..2342446+ go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 *--* Q6H510_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00029032g0006.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.3|0.55|0.5|10|0|321; (*ITAG) Solyc01g080740.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:72480055-72487019 transcript_region:SL2.40ch01:72480055..72487019- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010486g0002.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|210 NbS00040503g0004.1 protein AED:0.15 eAED:0.16 QI:510|0.66|0.25|1|1|1|4|0|175; (*GB) gi|225464063|ref|XP_002269289.1| (e_value=6e-41) PREDICTED: uncharacterized protein C6C3.02c [Vitis vinifera];; (*TAIR) AT5G64400.1 (e_value=3e-34) | Symbols: | CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25748922-25750182 FORWARD LENGTH=144;; (*ITAG) Solyc10g047650.1.1 (e_value=6e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:37017583-37019644 transcript_region:SL2.40ch10:37017583..37019644+ go_terms:GO:0005515 functional_description:"p8MTCP1 (AHRD V1 ***- B6TKB9_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0005515 NbS00007379g0010.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|0.5|0.6|5|0|327; (*GB) gi|225433847|ref|XP_002263742.1| (e_value=1e-106) PREDICTED: probable inositol transporter 1 [Vitis vinifera];; (*SWP) sp|Q8VZR6|INT1_ARATH (e_value=4e-107) Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1;; (*TAIR) AT2G43330.1 (e_value=3e-108) | Symbols: ATINT1, INT1 | inositol transporter 1 | chr2:18001135-18003854 FORWARD LENGTH=509;; (*ITAG) Solyc06g073420.2.1 (e_value=3e-133) genomic_reference:SL2.40ch06 gene_region:41638998-41644448 transcript_region:SL2.40ch06:41638998..41644448+ go_terms:GO:0005366 functional_description:"Myo-inositol transporter 2 (AHRD V1 **** ITR2_SCHPO); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366 NbS00007379g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.8|1|0.75|1|5|396|238; (*GB) gi|225433856|ref|XP_002264306.1| (e_value=3e-68) PREDICTED: gamma-secretase subunit APH1-like [Vitis vinifera];; (*SWP) sp|Q8L9G7|APH1_ARATH (e_value=2e-68) Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2;; (*TAIR) AT2G31440.1 (e_value=1e-69) | Symbols: | INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:13399309-13400971 REVERSE LENGTH=250;; (*ITAG) Solyc06g073410.2.1 (e_value=5e-73) genomic_reference:SL2.40ch06 gene_region:41630217-41636100 transcript_region:SL2.40ch06:41630217..41636100+ go_terms:GO:0016021 functional_description:"Gamma-secretase subunit APH-1B (AHRD V1 ***- B6TH01_MAIZE); contains Interpro domain(s) IPR009294 Aph-1 "; GO:0016021 NbS00013054g0005.1 protein AED:0.03 eAED:0.03 QI:183|0.8|0.81|1|0.6|0.54|11|402|689; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=4e-157) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=9e-59) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT5G66850.1 (e_value=5e-137) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc04g079400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61503685-61508549 transcript_region:SL2.40ch04:61503685..61508549- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00022158g0001.1 protein AED:0.12 eAED:0.12 QI:344|1|1|1|0.73|0.62|16|153|959; (*GB) gi|19570247|dbj|BAB86283.1| (e_value=0.0) kinesin-like protein NACK1 [Nicotiana tabacum];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=1e-86) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT1G18370.1 (e_value=0.0) | Symbols: HIK, ATNACK1, NACK1 | ATP binding microtubule motor family protein | chr1:6319732-6323820 REVERSE LENGTH=974;; (*ITAG) Solyc03g119220.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61925706-61931501 transcript_region:SL2.40ch03:61925706..61931501- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L5J2_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00029012g0001.1 protein AED:0.10 eAED:0.10 QI:332|1|1|1|0.88|0.8|10|667|429; (*GB) gi|255538354|ref|XP_002510242.1| (e_value=0.0) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9FX08|P2C12_ARATH (e_value=0.0) Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1;; (*TAIR) AT1G47380.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428;; (*ITAG) Solyc04g079120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61298550-61303970 transcript_region:SL2.40ch04:61298550..61303970- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein expressed (AHRD V1 ***- Q94LH3_ORYSJ); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00029012g0016.1 protein AED:0.32 eAED:0.36 QI:0|0.83|0.71|1|0.33|0.42|7|447|294; (*GB) gi|225458579|ref|XP_002284610.1| (e_value=3e-117) PREDICTED: uncharacterized protein LOC100248838 [Vitis vinifera];; (*TAIR) AT4G33380.1 (e_value=2e-105) | Symbols: | unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:16072064-16074605 FORWARD LENGTH=328;; (*ITAG) Solyc07g025390.2.1 (e_value=3e-158) genomic_reference:SL2.40ch07 gene_region:27933206-27941079 transcript_region:SL2.40ch07:27933206..27941079- functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 *--- A8HX99_CHLRE)"; NbS00029012g0018.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|1|1|3|0|209; (*GB) gi|302142374|emb|CBI19577.3| (e_value=1e-46) unnamed protein product [Vitis vinifera];; (*SWP) sp|D0EL35|CTC1_ARATH (e_value=5e-20) CST complex subunit CTC1 OS=Arabidopsis thaliana GN=CTC1 PE=1 SV=2;; (*TAIR) AT4G09680.1 (e_value=3e-21) | Symbols: CTC1, ATCTC1 | conserved telomere maintenance component 1 | chr4:6116819-6123017 FORWARD LENGTH=1274; NbS00029012g0013.1 protein AED:0.23 eAED:0.23 QI:97|0.70|0.77|0.94|0.82|0.83|18|575|706; (*GB) gi|225458521|ref|XP_002284264.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262703 [Vitis vinifera];; (*TAIR) AT5G36210.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:14248202-14253272 REVERSE LENGTH=730;; (*ITAG) Solyc04g049630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41776714-41794055 transcript_region:SL2.40ch04:41776714..41794055- go_terms:GO:0008233 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 **** B7K7L2_CYAP7); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0008233 NbS00041866g0006.1 protein AED:0.01 eAED:0.01 QI:165|1|1|1|0|0.5|2|19|75; (*TAIR) AT5G55850.1 (e_value=2e-15) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc02g093670.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:49011572-49013000 transcript_region:SL2.40ch02:49011572..49013000+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- B6SJI8_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00032418g0004.1 protein AED:0.30 eAED:0.30 QI:147|0.83|0.85|1|0.66|0.71|7|0|452; (*GB) gi|297741622|emb|CBI32754.3| (e_value=9e-49) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G17460.1 (e_value=9e-20) | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546 FORWARD LENGTH=604;; (*ITAG) Solyc09g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1461588-1472231 transcript_region:SL2.40ch09:1461588..1472231- go_terms:GO:0003677,GO:0045449 functional_description:"Telomere repeat-binding protein 5 (AHRD V1 *-*- TRP5_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00019715g0004.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.4|0.5|0.8|5|0|197 NbS00023459g0002.1 protein AED:0.32 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|437; (*ITAG) Solyc01g073980.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00023459g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|357163432|ref|XP_003579729.1| (e_value=1e-44) PREDICTED: LOW QUALITY PROTEIN: histone H3.2-like [Brachypodium distachyon];; (*SWP) sp|Q76MV0|H32_TOBAC (e_value=5e-46) Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1;; (*TAIR) AT5G65360.1 (e_value=4e-47) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=3e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00045885g0004.1 protein AED:0.06 eAED:0.06 QI:18|0|0.66|0.66|1|1|3|56|163; (*GB) gi|225458565|ref|XP_002284571.1| (e_value=7e-55) PREDICTED: patatin group A-3 [Vitis vinifera];; (*SWP) sp|Q3YJS9|PT3K1_SOLTU (e_value=6e-23) Patatin-3-Kuras 1 OS=Solanum tuberosum GN=pat3-k1 PE=1 SV=1;; (*TAIR) AT2G26560.1 (e_value=8e-46) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079240.2.1 (e_value=5e-73) genomic_reference:SL2.40ch04 gene_region:61350800-61354292 transcript_region:SL2.40ch04:61350800..61354292- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00006019g0001.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.25|1|1|4|0|92 NbS00006019g0007.1 protein AED:0.35 eAED:0.44 QI:0|0.25|0.2|1|0.25|0.4|5|184|114 NbS00055217g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|286; (*GB) gi|297740605|emb|CBI30787.3| (e_value=9e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39224|SRG1_ARATH (e_value=6e-100) Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1;; (*TAIR) AT1G17020.1 (e_value=4e-101) | Symbols: SRG1, ATSRG1 | senescence-related gene 1 | chr1:5820258-5821741 FORWARD LENGTH=358;; (*ITAG) Solyc02g071430.2.1 (e_value=2e-99) genomic_reference:SL2.40ch02 gene_region:35460364-35462257 transcript_region:SL2.40ch02:35460364..35462257- go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_ACTDE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00013165g0006.1 protein AED:0.11 eAED:0.11 QI:247|1|1|1|0.66|0.7|10|613|960; (*GB) gi|359496309|ref|XP_002264751.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HOS1-like [Vitis vinifera];; (*SWP) sp|Q84JU6|HOS1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase HOS1 OS=Arabidopsis thaliana GN=HOS1 PE=1 SV=1;; (*TAIR) AT2G39810.1 (e_value=0.0) | Symbols: HOS1 | ubiquitin-protein ligases | chr2:16612941-16617802 FORWARD LENGTH=927;; (*ITAG) Solyc08g078320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59296206-59304933 transcript_region:SL2.40ch08:59296206..59304933+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase HOS1 (AHRD V1 **** HOS1_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00035391g0002.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|495|207; (*GB) gi|365222894|gb|AEW69799.1| (e_value=1e-134) Hop-interacting protein THI037 [Solanum lycopersicum];; (*SWP) sp|Q7ZUL9|MGRN1_DANRE (e_value=4e-30) Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1;; (*TAIR) AT3G06140.1 (e_value=9e-76) | Symbols: | RING/U-box superfamily protein | chr3:1856993-1858777 REVERSE LENGTH=359;; (*ITAG) Solyc01g080080.2.1 (e_value=3e-102) genomic_reference:SL2.40ch01 gene_region:71755260-71756339 transcript_region:SL2.40ch01:71755260..71756339- go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00035391g0005.1 protein AED:0.20 eAED:0.21 QI:0|0.33|0|0.75|0|0|4|0|410; (*GB) gi|356521947|ref|XP_003529611.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100804757 [Glycine max];; (*TAIR) AT3G06130.2 (e_value=1e-41) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:1853193-1854673 REVERSE LENGTH=349;; (*ITAG) Solyc01g080070.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:71732658-71735333 transcript_region:SL2.40ch01:71732658..71735333- go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- B6TJ24_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00016149g0006.1 protein AED:0.80 eAED:0.87 QI:0|0|0|0.5|0.33|0.5|4|0|230 NbS00016149g0007.1 protein AED:0.21 eAED:0.32 QI:0|0|0|1|0|0|2|0|117 NbS00026337g0115.1 protein AED:0.03 eAED:0.03 QI:143|0.66|0.5|1|1|1|4|228|580 NbS00026337g0112.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.5|0.33|3|0|659 NbS00026337g0113.1 protein AED:0.38 eAED:0.46 QI:0|1|0.5|1|1|1|2|0|214 NbS00026337g0114.1 protein AED:0.34 eAED:0.59 QI:0|0|0|1|0|0|2|0|136 NbS00033540g0004.1 protein AED:0.44 eAED:0.77 QI:70|0.5|0.2|1|1|0.8|5|0|99; (*GB) gi|225437963|ref|XP_002271401.1| (e_value=4e-47) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SK66|NDUA9_ARATH (e_value=2e-45) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2 SV=2;; (*TAIR) AT2G20360.1 (e_value=1e-46) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402;; (*ITAG) Solyc09g064450.2.1 (e_value=5e-49) genomic_reference:SL2.40ch09 gene_region:57326433-57337506 transcript_region:SL2.40ch09:57326433..57337506+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (Ubiquinone) (AHRD V1 **** D7FUY2_ECTSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005515,GO:0008137 NbS00013257g0019.1 protein AED:0.20 eAED:0.23 QI:0|0.33|0|1|0.33|0.25|4|0|597; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=0.0) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=0.0) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=0.0) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc03g093140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47765031-47767076 transcript_region:SL2.40ch03:47765031..47767076- go_terms:GO:0005351,GO:0015169 functional_description:"MFS family major facilitator transporter glycerol-3-phosphate cation symporter (AHRD V1 **** C9PNR4_9PAST); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00013257g0018.1 protein AED:0.22 eAED:0.26 QI:0|0.66|0.6|1|0.77|0.7|10|1|422; (*GB) gi|297795951|ref|XP_002865860.1| (e_value=2e-121) hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q3SX41|LC7L3_BOVIN (e_value=2e-40) Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1;; (*TAIR) AT5G51410.3 (e_value=2e-122) | Symbols: | LUC7 N_terminus domain-containing protein | chr5:20881821-20883577 REVERSE LENGTH=334;; (*ITAG) Solyc03g093160.2.1 (e_value=6e-141) genomic_reference:SL2.40ch03 gene_region:47808883-47814643 transcript_region:SL2.40ch03:47808883..47814643- go_terms:GO:0050733,GO:0019899 functional_description:"LUC7-like 2 (AHRD V1 *--- Q6NVN5_XENTR); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0050733,GO:0019899 NbS00013257g0015.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|2|0|273; (*GB) gi|255539783|ref|XP_002510956.1| (e_value=2e-98) peroxisomal biogenesis factor, putative [Ricinus communis];; (*SWP) sp|Q7XU74|PX114_ORYSJ (e_value=3e-83) Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2;; (*TAIR) AT3G47430.1 (e_value=3e-82) | Symbols: PEX11B | peroxin 11B | chr3:17480798-17481692 FORWARD LENGTH=227;; (*ITAG) Solyc03g093180.1.1 (e_value=3e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:47830010-47830684 transcript_region:SL2.40ch03:47830010..47830684+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-4 (AHRD V1 ***- PX114_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00035419g0008.1 protein AED:0.18 eAED:0.19 QI:0|0.53|0.5|0.92|0.53|0.57|14|0|1051; (*GB) gi|225460139|ref|XP_002275897.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C9I3|PP115_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1;; (*TAIR) AT1G71460.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:26928247-26930316 REVERSE LENGTH=689;; (*ITAG) Solyc07g052590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58387932-58389956 transcript_region:SL2.40ch07:58387932..58389956- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00035419g0009.1 protein AED:0.30 eAED:0.30 QI:246|0.87|1|1|1|1|9|360|283; (*GB) gi|225447340|ref|XP_002280526.1| (e_value=2e-139) PREDICTED: peroxisome biogenesis protein 22 [Vitis vinifera];; (*SWP) sp|Q9LSX7|PEX22_ARATH (e_value=7e-119) Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1;; (*TAIR) AT3G21865.1 (e_value=6e-120) | Symbols: PEX22 | peroxin 22 | chr3:7701308-7703218 REVERSE LENGTH=283;; (*ITAG) Solyc07g052600.2.1 (e_value=1e-167) genomic_reference:SL2.40ch07 gene_region:58391039-58399838 transcript_region:SL2.40ch07:58391039..58399838- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 **-- Q9LSX7_ARATH)"; GO:0005515 NbS00020601g0006.1 protein AED:0.15 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|745; (*GB) gi|225433177|ref|XP_002281549.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Vitis vinifera];; (*SWP) sp|P0C898|PP232_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1;; (*TAIR) AT3G15130.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:5097153-5099222 REVERSE LENGTH=689;; (*ITAG) Solyc07g006990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1792963-1795020 transcript_region:SL2.40ch07:1792963..1795020+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9F5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00020601g0020.1 protein AED:0.28 eAED:0.28 QI:496|1|1|1|0.57|0.37|8|279|382; (*GB) gi|297735438|emb|CBI17878.3| (e_value=2e-161) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=2e-16) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT5G55950.1 (e_value=1e-132) | Symbols: | Nucleotide/sugar transporter family protein | chr5:22658411-22660253 REVERSE LENGTH=398;; (*ITAG) Solyc07g006910.2.1 (e_value=1e-180) genomic_reference:SL2.40ch07 gene_region:1761390-1764642 transcript_region:SL2.40ch07:1761390..1764642- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00020601g0016.1 protein AED:0.30 eAED:0.49 QI:0|0.6|0.33|0.83|0.6|0.83|6|0|427; (*GB) gi|255573531|ref|XP_002527690.1| (e_value=1e-176) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G20590.1 (e_value=2e-170) | Symbols: TBL5 | TRICHOME BIREFRINGENCE-LIKE 5 | chr5:6963517-6966006 FORWARD LENGTH=485;; (*ITAG) Solyc07g006920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1765581-1769248 transcript_region:SL2.40ch07:1765581..1769248- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00020601g0021.1 protein AED:0.04 eAED:0.04 QI:0|0.83|0.57|0.85|0.66|0.71|7|0|613; (*GB) gi|350534996|ref|NP_001234170.1| (e_value=0.0) auxin efflux facilitator SlPIN2 [Solanum lycopersicum];; (*SWP) sp|Q9LU77|PIN2_ARATH (e_value=0.0) Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2;; (*TAIR) AT5G57090.1 (e_value=0.0) | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | Auxin efflux carrier family protein | chr5:23100765-23104456 FORWARD LENGTH=647;; (*ITAG) Solyc07g006900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1755020-1757837 transcript_region:SL2.40ch07:1755020..1757837+ go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier protein (AHRD V1 **** Q84YG8_MEDTR); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00020601g0001.1 protein AED:0.11 eAED:0.16 QI:0|0|0|1|1|1|3|0|439; (*GB) gi|296086240|emb|CBI31681.3| (e_value=2e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=2e-26) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=2e-27) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc07g006930.1.1 (e_value=4e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1770787-1772328 transcript_region:SL2.40ch07:1770787..1772328+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 *--- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00027369g0006.1 protein AED:0.33 eAED:0.34 QI:114|1|0|1|1|1|3|398|151; (*GB) gi|255544630|ref|XP_002513376.1| (e_value=2e-51) Peroxidase 57 precursor, putative [Ricinus communis];; (*SWP) sp|O81755|PER48_ARATH (e_value=3e-23) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=2e-24) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc02g085930.2.1 (e_value=1e-71) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00027369g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|181; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=2e-114) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=5e-116) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=3e-92) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=2e-112) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00053887g0005.1 protein AED:0.12 eAED:0.12 QI:523|0.94|0.94|1|0.94|0.89|19|116|1006; (*GB) gi|11066033|gb|AAG28426.1|AF194945_1 (e_value=0.0) cytosolic aconitase [Nicotiana tabacum];; (*SWP) sp|P49608|ACOC_CUCMA (e_value=0.0) Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1;; (*TAIR) AT2G05710.1 (e_value=0.0) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc12g005860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:490745-498964 transcript_region:SL2.40ch12:490745..498964- go_terms:GO:0008152 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_BACWK); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0008152 NbS00023363g0007.1 protein AED:0.00 eAED:0.00 QI:60|1|1|1|1|1|2|287|378; (*GB) gi|356565414|ref|XP_003550935.1| (e_value=1e-136) PREDICTED: probable purine permease 11-like [Glycine max];; (*SWP) sp|O49725|PUP10_ARATH (e_value=1e-111) Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=1e-112) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc08g077380.2.1 (e_value=6e-149) genomic_reference:SL2.40ch08 gene_region:58422237-58424301 transcript_region:SL2.40ch08:58422237..58424301- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00023363g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|224126577|ref|XP_002329589.1| (e_value=5e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GT41|PLA1_PLAAC (e_value=1e-34) Putative invertase inhibitor OS=Platanus acerifolia PE=1 SV=1;; (*TAIR) AT5G38610.1 (e_value=2e-30) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:15460845-15461444 REVERSE LENGTH=199;; (*ITAG) Solyc08g077400.1.1 (e_value=8e-81) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:58438147-58439198 transcript_region:SL2.40ch08:58438147..58439198- go_terms:GO:0030599 functional_description:"Invertase inhibitor (AHRD V1 ***- A7IZL0_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00028369g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|154; (*ITAG) Solyc08g078360.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59352176-59352790 transcript_region:SL2.40ch08:59352176..59352790- functional_description:"Unknown Protein (AHRD V1)"; NbS00006505g0014.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|0.5|0.33|3|0|675; (*GB) gi|225440318|ref|XP_002269811.1| (e_value=7e-103) PREDICTED: uncharacterized protein LOC100266589 [Vitis vinifera];; (*TAIR) AT3G09450.1 (e_value=2e-67) | Symbols: | CONTAINS InterPro DOMAIN/s: Fusaric acid resistance protein, conserved region (InterPro:IPR006726); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28780.1); Has 503 Blast hits to 494 proteins in 215 species: Archae - 0; Bacteria - 423; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr3:2907548-2910091 FORWARD LENGTH=775;; (*ITAG) Solyc10g084720.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63463824-63467514 transcript_region:SL2.40ch10:63463824..63467514- functional_description:"Unknown Protein (AHRD V1)"; NbS00006505g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.5|4|0|849; (*GB) gi|225440318|ref|XP_002269811.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266589 [Vitis vinifera];; (*TAIR) AT2G28780.1 (e_value=1e-144) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc10g084720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63463824-63467514 transcript_region:SL2.40ch10:63463824..63467514- functional_description:"Unknown Protein (AHRD V1)"; NbS00006505g0015.1 protein AED:0.00 eAED:0.01 QI:0|0|0|1|0|0|2|0|1323; (*GB) gi|374095605|gb|AEY85030.1| (e_value=0.0) putative 5-oxoprolinase [Camellia sinensis];; (*SWP) sp|Q9FIZ7|OPLA_ARATH (e_value=0.0) 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1;; (*TAIR) AT5G37830.1 (e_value=0.0) | Symbols: OXP1 | oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266;; (*ITAG) Solyc09g010560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3920997-3924803 transcript_region:SL2.40ch09:3920997..3924803- go_terms:GO:0017168 functional_description:"5-oxoprolinase (ATP-hydrolyzing) (AHRD V1 **** Q1JWC8_DESAC); contains Interpro domain(s) IPR003692 Hydantoinase B/oxoprolinase "; GO:0017168 NbS00039168g0004.1 protein AED:0.26 eAED:0.28 QI:281|0.75|0.69|1|0.25|0.46|13|0|545; (*GB) gi|359476820|ref|XP_002265520.2| (e_value=0.0) PREDICTED: MLO17 protein [Vitis vinifera];; (*SWP) sp|O23693|MLO4_ARATH (e_value=9e-115) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=7e-116) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc02g083720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41596474-41602413 transcript_region:SL2.40ch02:41596474..41602413- go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00010366g0002.1 protein AED:0.06 eAED:0.12 QI:0|0.25|0|1|1|1|5|399|750; (*GB) gi|359480844|ref|XP_002276745.2| (e_value=3e-118) PREDICTED: uncharacterized protein LOC100252593 [Vitis vinifera];; (*SWP) sp|Q9UKV3|ACINU_HUMAN (e_value=4e-18) Apoptotic chromatin condensation inducer in the nucleus OS=Homo sapiens GN=ACIN1 PE=1 SV=2;; (*TAIR) AT4G39680.2 (e_value=7e-71) | Symbols: | SAP domain-containing protein | chr4:18414604-18416938 REVERSE LENGTH=633;; (*ITAG) Solyc04g072670.2.1 (e_value=1e-58) genomic_reference:SL2.40ch04 gene_region:57222954-57227125 transcript_region:SL2.40ch04:57222954..57227125- go_terms:GO:0003676 functional_description:"Apoptotic chromatin condensation inducer 1 (Fragment) (AHRD V1 *--- B8JJ88_MOUSE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00010366g0207.1 protein AED:0.29 eAED:0.30 QI:244|0.66|0.5|1|0.66|0.25|4|0|188 NbS00010366g0315.1 protein AED:0.04 eAED:0.04 QI:87|1|0.87|1|1|1|8|0|454 NbS00010366g0317.1 protein AED:0.07 eAED:0.07 QI:0|0.25|0.11|0.66|0.87|0.88|9|0|2119 NbS00010366g0316.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|643|111 NbS00010366g0301.1 protein AED:0.15 eAED:0.33 QI:0|0|0|1|1|1|2|0|135 NbS00053744g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|99|448; (*GB) gi|224101373|ref|XP_002312252.1| (e_value=2e-102) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=6e-35) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT1G69560.1 (e_value=7e-75) | Symbols: MYB105, LOF2, ATMYB105 | myb domain protein 105 | chr1:26157755-26158906 FORWARD LENGTH=330;; (*ITAG) Solyc05g007870.1.1 (e_value=5e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2312616-2314591 transcript_region:SL2.40ch05:2312616..2314591+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9C5P9_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00021375g0001.1 protein AED:0.06 eAED:0.06 QI:40|0.66|0.5|0.75|1|1|4|0|377; (*GB) gi|1168322|sp|P30168.2|ACT6_SOLTU (e_value=0.0) RecName: Full=Actin-71;; (*SWP) sp|P30168|ACT6_SOLTU (e_value=0.0) Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2;; (*TAIR) AT3G53750.1 (e_value=0.0) | Symbols: ACT3 | actin 3 | chr3:19915924-19917371 FORWARD LENGTH=377;; (*ITAG) Solyc10g086460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64597752-64599548 transcript_region:SL2.40ch10:64597752..64599548+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q9SAR7_STRAF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00003617g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.72|1|1|1|11|0|635; (*GB) gi|297741763|emb|CBI32992.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-44) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G62330.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:23046965-23050053 FORWARD LENGTH=652;; (*ITAG) Solyc02g081080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39732298-39737392 transcript_region:SL2.40ch02:39732298..39737392+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00003617g0008.1 protein AED:0.21 eAED:0.21 QI:185|1|1|1|0.5|0.8|5|239|215; (*GB) gi|363814276|ref|NP_001242778.1| (e_value=1e-131) uncharacterized protein LOC100800993 [Glycine max];; (*SWP) sp|Q3UHR0|BAHC1_MOUSE (e_value=1e-11) BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2;; (*TAIR) AT4G22140.2 (e_value=6e-129) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc07g049210.2.1 (e_value=9e-126) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00011216g0015.1 protein AED:0.10 eAED:0.14 QI:0|0.33|0|1|0.33|0.5|4|0|651; (*GB) gi|224126989|ref|XP_002319979.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL63|Y5410_ARATH (e_value=1e-119) Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1;; (*TAIR) AT5G24100.1 (e_value=9e-121) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:8149216-8151191 FORWARD LENGTH=614;; (*ITAG) Solyc09g030450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:20327369-20330437 transcript_region:SL2.40ch09:20327369..20330437- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00011216g0014.1 protein AED:0.14 eAED:0.14 QI:240|0.83|0.71|1|0.5|0.28|7|0|588; (*GB) gi|225439115|ref|XP_002266425.1| (e_value=4e-158) PREDICTED: uncharacterized protein LOC100267210 [Vitis vinifera];; (*TAIR) AT3G08670.1 (e_value=1e-69) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). | chr3:2633946-2636536 FORWARD LENGTH=567;; (*ITAG) Solyc06g054690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33932161-33935931 transcript_region:SL2.40ch06:33932161..33935931- functional_description:"Transposon protein CACTA En/Spm sub-class (AHRD V1 *--- B6SWV7_MAIZE)"; NbS00011216g0013.1 protein AED:0.29 eAED:0.43 QI:114|0.63|0.65|0.95|0.63|0.5|20|0|761; (*GB) gi|224087896|ref|XP_002308260.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT2G38580.1 (e_value=6e-29) | Symbols: | Mitochondrial ATP synthase D chain-related protein | chr2:16138838-16142371 FORWARD LENGTH=482;; (*ITAG) Solyc09g016940.2.1 (e_value=2e-167) genomic_reference:SL2.40ch09 gene_region:11825120-11842285 transcript_region:SL2.40ch09:11825120..11842285+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011216g0104.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|183 NbS00011216g0101.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|201 NbS00011216g0110.1 protein AED:0.38 eAED:0.38 QI:278|1|1|1|0.25|0.4|5|507|152 NbS00011216g0113.1 protein AED:0.12 eAED:0.13 QI:20|0|0|1|0.5|0.33|3|0|972 NbS00007694g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|4|0|378; (*GB) gi|222350813|dbj|BAH19346.1| (e_value=0.0) S locus glycoprotein like protein [Nicotiana tabacum];; (*SWP) sp|O81832|Y4729_ARATH (e_value=7e-103) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=5e-104) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc02g030300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16184082-16189781 transcript_region:SL2.40ch02:16184082..16189781+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00007694g0012.1 protein AED:0.12 eAED:0.12 QI:119|1|1|1|1|1|4|107|267; (*GB) gi|358249262|ref|NP_001239764.1| (e_value=1e-117) uncharacterized protein LOC100807450 [Glycine max];; (*TAIR) AT3G26710.1 (e_value=6e-111) | Symbols: CCB1 | cofactor assembly of complex C | chr3:9813550-9814606 FORWARD LENGTH=267;; (*ITAG) Solyc02g005210.2.1 (e_value=8e-154) genomic_reference:SL2.40ch02 gene_region:1578394-1580335 transcript_region:SL2.40ch02:1578394..1580335- functional_description:"CPLD51 protein required for cyt b6 assembly (AHRD V1 **-- D8LHH2_ECTSI)"; NbS00007694g0013.1 protein AED:0.41 eAED:0.60 QI:0|0|0|1|0|0|3|0|184; (*GB) gi|255575980|ref|XP_002528886.1| (e_value=1e-40) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|O81906|B120_ARATH (e_value=3e-25) G-type lectin S-receptor-like serine/threonine-protein kinase B120 OS=Arabidopsis thaliana GN=B120 PE=1 SV=1;; (*TAIR) AT4G21390.1 (e_value=3e-26) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc02g030300.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:16184082-16189781 transcript_region:SL2.40ch02:16184082..16189781+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00040639g0001.1 protein AED:0.06 eAED:0.10 QI:491|1|0.5|1|0|0|2|0|112 NbS00003256g0006.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|255571423|ref|XP_002526659.1| (e_value=8e-72) transcription factor, putative [Ricinus communis];; (*ITAG) Solyc09g018460.1.1 (e_value=3e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14933729-14935231 transcript_region:SL2.40ch09:14933729..14935231- functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00003256g0005.1 protein AED:0.26 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|89474468|gb|ABD72961.1| (e_value=4e-60) GRAS5 [Solanum lycopersicum];; (*ITAG) Solyc09g018460.1.1 (e_value=4e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14933729-14935231 transcript_region:SL2.40ch09:14933729..14935231- functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00003256g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|1|0.8|0.5|6|262|1085; (*GB) gi|38142359|dbj|BAD00983.1| (e_value=0.0) ubiquitin activating enzyme 1 [Nicotiana tabacum];; (*SWP) sp|P92974|UBE12_ARATH (e_value=0.0) Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1;; (*TAIR) AT5G06460.1 (e_value=0.0) | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme 2 | chr5:1970239-1974382 FORWARD LENGTH=1077;; (*ITAG) Solyc09g018450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14926834-14932901 transcript_region:SL2.40ch09:14926834..14932901+ go_terms:GO:0004842 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 **** Q75VJ8_TOBAC); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0004842 NbS00003256g0015.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|0.5|2|0|127; (*ITAG) Solyc07g021740.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00003256g0016.1 protein AED:0.29 eAED:0.36 QI:41|0|0|0.4|0.5|0.4|5|0|334; (*GB) gi|147774565|emb|CAN72282.1| (e_value=1e-16) hypothetical protein VITISV_043941 [Vitis vinifera];; (*ITAG) Solyc11g011540.1.1 (e_value=8e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00034518g0001.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|0|0|2|0|210; (*GB) gi|142942523|gb|ABO93014.1| (e_value=6e-128) putative sterol desaturase [Solanum tuberosum];; (*SWP) sp|Q8VYI1|SBH1_ARATH (e_value=6e-119) Sphingoid base hydroxylase 1 OS=Arabidopsis thaliana GN=SBH1 PE=2 SV=1;; (*TAIR) AT1G69640.1 (e_value=5e-120) | Symbols: SBH1 | sphingoid base hydroxylase 1 | chr1:26193933-26195466 REVERSE LENGTH=260;; (*ITAG) Solyc01g010860.2.1 (e_value=4e-140) genomic_reference:SL2.40ch01 gene_region:6302978-6307253 transcript_region:SL2.40ch01:6302978..6307253+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 *--* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00034518g0009.1 protein AED:0.22 eAED:0.24 QI:7|0.57|0.37|1|0.71|0.62|8|0|656; (*GB) gi|142942405|gb|ABO92980.1| (e_value=0.0) putative methyltransferase [Solanum tuberosum];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc01g010870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6308707-6315760 transcript_region:SL2.40ch01:6308707..6315760- functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00056722g0005.1 protein AED:0.12 eAED:0.14 QI:0|1|0.5|1|1|1|2|311|287; (*GB) gi|147853033|emb|CAN81258.1| (e_value=7e-116) hypothetical protein VITISV_000965 [Vitis vinifera];; (*SWP) sp|Q8LEA8|EID1_ARATH (e_value=2e-106) Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2;; (*TAIR) AT4G02440.1 (e_value=1e-107) | Symbols: EID1 | F-box family protein | chr4:1072555-1073565 FORWARD LENGTH=336;; (*ITAG) Solyc09g075080.2.1 (e_value=8e-146) genomic_reference:SL2.40ch09 gene_region:62390490-62393444 transcript_region:SL2.40ch09:62390490..62393444- go_terms:GO:0005515,GO:0004842 functional_description:"Phytochrome A-associated F-box protein (AHRD V1 ***- EID1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00024363g0104.1 protein AED:0.14 eAED:0.18 QI:0|0.33|0.14|1|0.16|0.14|7|0|264 NbS00002673g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|780; (*GB) gi|255567891|ref|XP_002524923.1| (e_value=0.0) LIM domain kinase, putative [Ricinus communis];; (*SWP) sp|C0LGS3|Y4372_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1;; (*TAIR) AT4G37250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:17527789-17530191 REVERSE LENGTH=768;; (*ITAG) Solyc02g092940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48488587-48492016 transcript_region:SL2.40ch02:48488587..48492016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbC23986161g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|350538889|ref|NP_001234108.1| (e_value=2e-47) phospholipase PLDb2 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=2e-40) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=2e-41) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc01g091910.2.1 (e_value=5e-50) genomic_reference:SL2.40ch01 gene_region:77200212-77210933 transcript_region:SL2.40ch01:77200212..77210933- go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00027138g0007.1 protein AED:0.29 eAED:0.30 QI:0|0.6|0.66|1|0.8|0.83|6|219|437; (*GB) gi|225435758|ref|XP_002285721.1| (e_value=0.0) PREDICTED: tubulin alpha-1 chain [Vitis vinifera];; (*SWP) sp|Q02245|TBA5_MAIZE (e_value=0.0) Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1;; (*TAIR) AT5G19780.1 (e_value=0.0) | Symbols: TUA5 | tubulin alpha-5 | chr5:6687212-6688926 FORWARD LENGTH=450;; (*ITAG) Solyc04g077020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00027138g0008.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|0|0.33|3|0|249; (*GB) gi|255583670|ref|XP_002532589.1| (e_value=3e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g005640.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:446769-454457 transcript_region:SL2.40ch01:446769..454457+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00040142g0005.1 protein AED:0.07 eAED:0.12 QI:0|0.57|0.37|1|0.42|0.37|8|0|484; (*GB) gi|255584317|ref|XP_002532894.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|O65718|CNGC2_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1;; (*TAIR) AT5G15410.2 (e_value=0.0) | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide-regulated ion channel family protein | chr5:5003460-5006512 REVERSE LENGTH=725;; (*ITAG) Solyc02g088560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45186246-45190069 transcript_region:SL2.40ch02:45186246..45190069- go_terms:GO:0005222 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005222 NbS00001676g0017.1 protein AED:0.05 eAED:0.05 QI:298|0.77|0.9|1|0.77|0.7|10|711|505; (*GB) gi|225438942|ref|XP_002279446.1| (e_value=0.0) PREDICTED: major facilitator superfamily domain-containing protein 5 [Vitis vinifera];; (*TAIR) AT2G23093.1 (e_value=1e-158) | Symbols: | Major facilitator superfamily protein | chr2:9832193-9834416 FORWARD LENGTH=449;; (*ITAG) Solyc02g092660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48247968-48253873 transcript_region:SL2.40ch02:48247968..48253873+ functional_description:"Major facilitator superfamily domain-containing protein (AHRD V1 ***- C9SAV7_VERA1); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00001676g0001.1 protein AED:0.08 eAED:0.09 QI:265|1|0.5|1|0|0|2|0|334; (*GB) gi|147772915|emb|CAN71564.1| (e_value=4e-115) hypothetical protein VITISV_007567 [Vitis vinifera];; (*TAIR) AT4G33890.2 (e_value=2e-67) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:16250057-16251085 FORWARD LENGTH=342;; (*ITAG) Solyc02g064710.2.1 (e_value=5e-178) genomic_reference:SL2.40ch02 gene_region:30401767-30403081 transcript_region:SL2.40ch02:30401767..30403081+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 ***- B9DHZ5_ARATH)"; NbS00001676g0005.1 protein AED:0.30 eAED:0.30 QI:278|0.66|0.75|0.75|0.66|0.75|4|244|83 NbS00001676g0002.1 protein AED:0.03 eAED:0.03 QI:346|0.75|0.8|1|1|1|5|516|632; (*GB) gi|255584886|ref|XP_002533158.1| (e_value=0.0) Root phototropism protein, putative [Ricinus communis];; (*SWP) sp|Q66GP0|Y5738_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2;; (*TAIR) AT5G67385.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26884754-26887083 FORWARD LENGTH=604;; (*ITAG) Solyc02g064720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30403624-30407634 transcript_region:SL2.40ch02:30403624..30407634- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00001676g0003.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.2|1|1|5|0|149; (*GB) gi|356541669|ref|XP_003539296.1| (e_value=4e-21) PREDICTED: uncharacterized protein At2g23090 [Glycine max];; (*SWP) sp|O64818|Y2309_ARATH (e_value=3e-21) Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1;; (*TAIR) AT2G23090.1 (e_value=2e-22) | Symbols: | Uncharacterised protein family SERF | chr2:9829657-9830274 REVERSE LENGTH=78;; (*ITAG) Solyc02g064730.2.1 (e_value=5e-24) genomic_reference:SL2.40ch02 gene_region:30412691-30418734 transcript_region:SL2.40ch02:30412691..30418734- functional_description:"Expressed protein having alternate splicing products (AHRD V1 *--- Q75KB8_ORYSJ); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 "; NbC24125786g0002.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|0|0|2|0|72; (*GB) gi|52851174|emb|CAH58635.1| (e_value=5e-46) Ubiquitin-conjugating enzyme [Plantago major];; (*SWP) sp|Q8S920|UBC5A_ORYSJ (e_value=2e-45) Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica GN=UBC5A PE=2 SV=1;; (*TAIR) AT1G64230.5 (e_value=6e-46) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=190;; (*ITAG) Solyc02g083570.2.1 (e_value=1e-50) genomic_reference:SL2.40ch02 gene_region:41507853-41509331 transcript_region:SL2.40ch02:41507853..41509331- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00036536g0003.1 protein AED:0.17 eAED:0.18 QI:0|0.33|0|1|1|1|4|0|636; (*GB) gi|225435343|ref|XP_002285243.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262081 [Vitis vinifera];; (*TAIR) AT5G60700.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc06g075100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42989149-42992794 transcript_region:SL2.40ch06:42989149..42992794+ go_terms:GO:0016757 functional_description:"Glycosyl transferase family 2 protein (AHRD V1 **-* B5RHS8_MUSBA)"; GO:0016757 NbS00036536g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0|2|72|71 NbS00036536g0007.1 protein AED:0.41 eAED:0.49 QI:0|0|0|1|0|0|3|0|170; (*GB) gi|297746272|emb|CBI16328.3| (e_value=6e-39) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g075100.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:42989149-42992794 transcript_region:SL2.40ch06:42989149..42992794+ go_terms:GO:0016757 functional_description:"Glycosyl transferase family 2 protein (AHRD V1 **-* B5RHS8_MUSBA)"; GO:0016757 NbS00021064g0209.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|0.5|0.33|3|0|355 NbS00032823g0008.1 protein AED:0.19 eAED:0.19 QI:81|0|0.5|0.5|1|1|2|0|65 NbS00032823g0015.1 protein AED:0.27 eAED:0.30 QI:0|0.66|0.25|1|0.33|0.5|4|0|475; (*GB) gi|224096536|ref|XP_002310648.1| (e_value=3e-163) predicted protein [Populus trichocarpa];; (*TAIR) AT5G23240.1 (e_value=5e-152) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:7826857-7828534 REVERSE LENGTH=465;; (*ITAG) Solyc02g014860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:10421855-10423865 transcript_region:SL2.40ch02:10421855..10423865+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- D2QAE1_BIFDB); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00032823g0012.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|140; (*GB) gi|224094081|ref|XP_002310072.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|P83877|TXN4A_MOUSE (e_value=2e-90) Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1;; (*TAIR) AT5G08290.1 (e_value=2e-102) | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD LENGTH=142;; (*ITAG) Solyc02g014870.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:10424377-10430192 transcript_region:SL2.40ch02:10424377..10430192- go_terms:GO:0005515 functional_description:"Mitosis protein dim1 (AHRD V1 **-- B6T4C6_MAIZE); contains Interpro domain(s) IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP "; GO:0005515 NbS00032823g0014.1 protein AED:0.32 eAED:0.32 QI:227|0.83|0.85|1|0.83|0.57|7|466|322; (*GB) gi|350537933|ref|NP_001234574.1| (e_value=0.0) succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [Solanum lycopersicum];; (*SWP) sp|Q6DQL1|SUCA2_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT5G23250.1 (e_value=1e-169) | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341;; (*ITAG) Solyc02g005350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2285566-2310956 transcript_region:SL2.40ch02:2285566..2310956- go_terms:GO:0005507 functional_description:"Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit "; GO:0005507 NbS00000620g0006.1 protein AED:0.57 eAED:0.57 QI:62|0|0.25|0.75|1|1|4|95|320; (*GB) gi|113205445|gb|AAW28576.2| (e_value=2e-13) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00000620g0004.1 protein AED:0.03 eAED:0.06 QI:0|0|0|1|0|0|2|0|106; (*ITAG) Solyc02g062450.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:28623171-28623580 transcript_region:SL2.40ch02:28623171..28623580- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00013025g0004.1 protein AED:0.02 eAED:0.02 QI:358|1|0.66|1|0.5|0.66|3|0|148; (*GB) gi|302142083|emb|CBI19286.3| (e_value=1e-61) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G58250.2 (e_value=1e-58) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2655;; (*ITAG) Solyc04g076550.2.1 (e_value=4e-75) genomic_reference:SL2.40ch04 gene_region:59043537-59058841 transcript_region:SL2.40ch04:59043537..59058841- functional_description:"Genomic DNA chromosome 5 TAC clone K2I5 (AHRD V1 **-- Q9LTA5_ARATH)"; NbS00030555g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|493; (*GB) gi|297738682|emb|CBI27927.3| (e_value=1e-179) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29560.1 (e_value=3e-139) | Symbols: | CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:14504421-14505999 REVERSE LENGTH=493;; (*ITAG) Solyc07g026640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:30035959-30039094 transcript_region:SL2.40ch07:30035959..30039094+ functional_description:"Fanconi anemia E (AHRD V1 *-*- Q1X871_DANRE)"; NbS00030555g0010.1 protein AED:0.28 eAED:0.28 QI:158|1|1|1|0.75|0.66|9|438|311; (*GB) gi|255546163|ref|XP_002514141.1| (e_value=1e-167) methyltransferase, putative [Ricinus communis];; (*TAIR) AT4G29590.1 (e_value=7e-150) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:14512736-14514404 REVERSE LENGTH=317;; (*ITAG) Solyc07g025520.2.1 (e_value=7e-160) genomic_reference:SL2.40ch07 gene_region:28770990-28778367 transcript_region:SL2.40ch07:28770990..28778367- go_terms:GO:0008152 functional_description:"Methyltransferase type 11 (AHRD V1 ***- B8GB91_CHLAD); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00030555g0013.1 protein AED:0.01 eAED:0.01 QI:122|1|1|1|1|1|3|174|301; (*GB) gi|350537429|ref|NP_001234037.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase [Solanum lycopersicum];; (*SWP) sp|Q9ZUN4|ACCO1_ARATH (e_value=3e-150) 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana GN=ACO1 PE=2 SV=1;; (*TAIR) AT2G19590.1 (e_value=2e-151) | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8476239-8477354 REVERSE LENGTH=310;; (*ITAG) Solyc07g026650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:30139957-30141385 transcript_region:SL2.40ch07:30139957..30141385- go_terms:GO:0045431,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **** Q6A1K7_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431,GO:0009815 NbS00030555g0016.1 protein AED:0.19 eAED:0.19 QI:317|0.5|0.66|1|0.5|0.33|3|345|257; (*GB) gi|224088023|ref|XP_002308295.1| (e_value=8e-115) predicted protein [Populus trichocarpa];; (*TAIR) AT2G19580.1 (e_value=4e-106) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270;; (*ITAG) Solyc07g025510.2.1 (e_value=8e-139) genomic_reference:SL2.40ch07 gene_region:28737718-28740341 transcript_region:SL2.40ch07:28737718..28740341+ go_terms:GO:0016021 functional_description:"Senescence-associated protein 5 (AHRD V1 ***- O81655_HEMSP); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00035447g0002.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0|2|0|68 NbS00006136g0008.1 protein AED:0.25 eAED:0.25 QI:92|1|0.85|1|0.66|0.85|7|0|385; (*GB) gi|153805698|gb|ABS52574.1| (e_value=1e-160) nodulin family protein [Gossypium hirsutum];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-70) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G08300.1 (e_value=1e-154) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:5245024-5248153 FORWARD LENGTH=373;; (*ITAG) Solyc11g012930.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5776686-5779737 transcript_region:SL2.40ch11:5776686..5779737+ go_terms:GO:0016020 functional_description:"Nodulin family protein (AHRD V1 ***- A7L2Z5_GOSHI); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00005758g0001.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|143; (*ITAG) Solyc06g065150.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37019237-37020178 transcript_region:SL2.40ch06:37019237..37020178+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00005758g0004.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|158; (*GB) gi|115531880|gb|ABJ09706.1| (e_value=6e-24) calcineurin B-like protein 3 [Populus euphratica];; (*SWP) sp|Q75LU8|CNBL3_ORYSJ (e_value=5e-24) Calcineurin B-like protein 3 OS=Oryza sativa subsp. japonica GN=CBL3 PE=1 SV=1;; (*TAIR) AT4G26570.1 (e_value=1e-24) | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | chr4:13408608-13409998 REVERSE LENGTH=226;; (*ITAG) Solyc07g065820.2.1 (e_value=5e-26) genomic_reference:SL2.40ch07 gene_region:64652286-64656394 transcript_region:SL2.40ch07:64652286..64656394+ go_terms:GO:0004723 functional_description:"Calcineurin B (AHRD V1 ***- Q8L7F6_PEA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0004723 NbS00000376g0011.1 protein AED:0.27 eAED:0.27 QI:180|1|0.83|1|1|1|6|0|272; (*GB) gi|255576737|ref|XP_002529256.1| (e_value=6e-178) ER lumen protein retaining receptor, putative [Ricinus communis];; (*SWP) sp|P48583|ERD2_CAEEL (e_value=9e-29) ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2;; (*TAIR) AT4G38790.1 (e_value=7e-170) | Symbols: | ER lumen protein retaining receptor family protein | chr4:18111426-18112977 FORWARD LENGTH=273;; (*ITAG) Solyc01g111090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89231575-89237853 transcript_region:SL2.40ch01:89231575..89237853- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor family protein (AHRD V1 ***- D7LL09_ARALY); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00000376g0014.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0|1|1|0.75|4|0|309; (*GB) gi|359474889|ref|XP_002276626.2| (e_value=3e-152) PREDICTED: COBRA-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q6Z4G8|COBL1_ORYSJ (e_value=4e-103) COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=7e-100) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc01g111050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89212418-89215551 transcript_region:SL2.40ch01:89212418..89215551+ functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00000376g0016.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|0|0|3|0|293; (*GB) gi|255576739|ref|XP_002529257.1| (e_value=2e-168) Chalcone synthase, putative [Ricinus communis];; (*SWP) sp|P08894|CHSA_PETHY (e_value=1e-76) Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1;; (*TAIR) AT4G34850.1 (e_value=5e-167) | Symbols: LAP5 | Chalcone and stilbene synthase family protein | chr4:16608349-16609720 FORWARD LENGTH=392;; (*ITAG) Solyc01g111070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89223425-89225729 transcript_region:SL2.40ch01:89223425..89225729+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase family protein (AHRD V1 ***- Q460V0_ARATH); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008415,GO:0008152,GO:0009058 NbS00000376g0013.1 protein AED:0.35 eAED:0.35 QI:0|1|0.87|1|0.85|1|8|385|265; (*GB) gi|224105257|ref|XP_002313743.1| (e_value=3e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T0I8|MTN1_ARATH (e_value=2e-123) 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 OS=Arabidopsis thaliana GN=MTN1 PE=1 SV=1;; (*TAIR) AT4G38800.1 (e_value=1e-124) | Symbols: ATMTN1, ATMTAN1, MTN1, MTAN1 | methylthioadenosine nucleosidase 1 | chr4:18113355-18114996 REVERSE LENGTH=267;; (*ITAG) Solyc01g111060.2.1 (e_value=1e-157) genomic_reference:SL2.40ch01 gene_region:89216546-89222824 transcript_region:SL2.40ch01:89216546..89222824+ go_terms:GO:0008930 functional_description:"5&apos-methylthioadenosine/S-adenosylhomocysteine nucleosidase (AHRD V1 **** D4FIY6_STAEP); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0008930 NbS00000006g0002.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|0|0|2|0|72 NbS00019431g0006.1 protein AED:0.06 eAED:0.06 QI:520|1|1|1|0.87|0.77|9|313|452; (*GB) gi|225446219|ref|XP_002263443.1| (e_value=0.0) PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82730|MGDG2_ARATH (e_value=0.0) Monogalactosyldiacylglycerol synthase 2, chloroplastic OS=Arabidopsis thaliana GN=MGD2 PE=1 SV=1;; (*TAIR) AT5G20410.1 (e_value=0.0) | Symbols: MGD2, ATMGD2 | monogalactosyldiacylglycerol synthase 2 | chr5:6896765-6898581 FORWARD LENGTH=468;; (*ITAG) Solyc12g009820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3016425-3020241 transcript_region:SL2.40ch12:3016425..3020241- go_terms:GO:0009247,GO:0030259 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-- C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0009247,GO:0030259 NbS00019431g0023.1 protein AED:0.08 eAED:0.08 QI:949|1|1|1|0.44|0.3|10|247|246; (*GB) gi|297805048|ref|XP_002870408.1| (e_value=2e-146) ATPAP26/PAP26 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=9e-146) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1;; (*TAIR) AT5G34850.1 (e_value=7e-147) | Symbols: ATPAP26, PAP26 | purple acid phosphatase 26 | chr5:13108475-13111217 REVERSE LENGTH=475;; (*ITAG) Solyc12g009800.1.1 (e_value=5e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3005117-3008886 transcript_region:SL2.40ch12:3005117..3008886- go_terms:GO:0016787,GO:0046872 functional_description:"Purple acid phosphatase 3 (AHRD V1 ***- Q6J5M8_SOLTU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0016787,GO:0046872 NbS00019431g0018.1 protein AED:0.10 eAED:0.10 QI:210|1|1|1|1|1|3|399|185; (*GB) gi|359487723|ref|XP_003633637.1| (e_value=1e-99) PREDICTED: LOW QUALITY PROTEIN: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Vitis vinifera];; (*SWP) sp|Q5I0K7|ALG13_RAT (e_value=9e-35) UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1;; (*TAIR) AT4G16710.2 (e_value=4e-86) | Symbols: | glycosyltransferase family protein 28 | chr4:9398818-9399618 FORWARD LENGTH=176;; (*ITAG) Solyc12g009810.1.1 (e_value=1e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3011434-3014084 transcript_region:SL2.40ch12:3011434..3014084- go_terms:GO:0030259 functional_description:"UDP-N-acetylglucosamine transferase subunit alg13 (AHRD V1 **-- C1BGJ4_ONCMY); contains Interpro domain(s) IPR007235 Glycosyl transferase, family 28, C-terminal "; GO:0030259 NbS00019431g0015.1 protein AED:0.69 eAED:0.87 QI:0|0|0|0.44|1|1|9|0|579 NbS00019431g0027.1 protein AED:0.20 eAED:0.20 QI:312|0.90|0.91|1|0.72|0.83|12|434|549; (*GB) gi|224120508|ref|XP_002331065.1| (e_value=0.0) plant synaptotagmin [Populus trichocarpa];; (*SWP) sp|Q5FWL4|EST2A_XENLA (e_value=3e-27) Extended synaptotagmin-2-A OS=Xenopus laevis GN=esyt2-a PE=2 SV=1;; (*TAIR) AT1G05500.1 (e_value=0.0) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc12g009790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2996761-3004035 transcript_region:SL2.40ch12:2996761..3004035+ functional_description:"Synaptotagmin-7 (AHRD V1 *--- SYT7_HUMAN); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00019431g0025.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.75|0.33|0.25|4|0|104; (*GB) gi|357458459|ref|XP_003599510.1| (e_value=4e-36) Serine carboxypeptidase-like protein [Medicago truncatula];; (*SWP) sp|Q0WRX3|SCP40_ARATH (e_value=1e-33) Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=1e-34) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g087950.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:74556171-74558727 transcript_region:SL2.40ch01:74556171..74558727- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00019431g0026.1 protein AED:0.45 eAED:0.49 QI:46|0|0|1|0|0|3|0|209; (*GB) gi|356531641|ref|XP_003534385.1| (e_value=3e-38) PREDICTED: serine carboxypeptidase-like 40-like isoform 3 [Glycine max];; (*SWP) sp|O23364|SCP30_ARATH (e_value=1e-20) Putative serine carboxypeptidase-like 30 OS=Arabidopsis thaliana GN=SCPL30 PE=2 SV=2;; (*TAIR) AT5G23210.3 (e_value=8e-24) | Symbols: SCPL34 | serine carboxypeptidase-like 34 | chr5:7810892-7814608 FORWARD LENGTH=459;; (*ITAG) Solyc01g087920.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74544356-74546453 transcript_region:SL2.40ch01:74544356..74546453- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00032545g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|384038813|gb|AFH57997.1| (e_value=0.0) chloroplast PsbO1 precursor [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=0.0) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g065400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31151784-31154764 transcript_region:SL2.40ch02:31151784..31154764+ go_terms:GO:0008266,GO:0005515 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266,GO:0005515 NbS00032545g0008.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|668; (*GB) gi|225462250|ref|XP_002263297.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g20230 [Vitis vinifera];; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=3e-177) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2;; (*TAIR) AT1G20230.1 (e_value=2e-178) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7009570-7011852 FORWARD LENGTH=760;; (*ITAG) Solyc02g065410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31155025-31157082 transcript_region:SL2.40ch02:31155025..31157082- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00034791g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.73|0.68|1|1|1|16|447|608; (*GB) gi|1762130|gb|AAB39827.1| (e_value=0.0) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|Q9LJE4|CPNB2_ARATH (e_value=0.0) Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1;; (*TAIR) AT3G13470.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00010922g0004.1 protein AED:0.34 eAED:0.35 QI:417|0.9|0.85|1|0.95|0.90|21|0|779; (*GB) gi|255552337|ref|XP_002517213.1| (e_value=0.0) chloride channel clc, putative [Ricinus communis];; (*SWP) sp|P92943|CLCD_ARATH (e_value=0.0) Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2;; (*TAIR) AT5G26240.1 (e_value=0.0) | Symbols: CLC-D, ATCLC-D | chloride channel D | chr5:9189622-9194347 FORWARD LENGTH=792;; (*ITAG) Solyc09g075800.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62913980-62927024 transcript_region:SL2.40ch09:62913980..62927024+ go_terms:GO:0005515,GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005515,GO:0005247 NbS00057303g0004.1 protein AED:0.29 eAED:0.30 QI:0|0.8|0.5|1|0.8|0.83|6|0|268; (*GB) gi|224117478|ref|XP_002317584.1| (e_value=7e-132) predicted protein [Populus trichocarpa];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=5e-62) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT5G54840.1 (e_value=1e-108) | Symbols: ATSGP1, SGP1 | Ras-related small GTP-binding family protein | chr5:22276611-22278328 REVERSE LENGTH=288;; (*ITAG) Solyc07g064290.2.1 (e_value=1e-147) genomic_reference:SL2.40ch07 gene_region:63720022-63724236 transcript_region:SL2.40ch07:63720022..63724236- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-21 (AHRD V1 *-*- C1BQH4_9MAXI); contains Interpro domain(s) IPR013684 Miro-like "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00005390g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|73; (*ITAG) Solyc06g084300.1.1 (e_value=1e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:45771321-45771512 transcript_region:SL2.40ch06:45771321..45771512- functional_description:"Unknown Protein (AHRD V1)"; NbS00005390g0013.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.6|1|0.5|0.6|5|643|455; (*GB) gi|225436992|ref|XP_002272356.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249456 [Vitis vinifera];; (*TAIR) AT3G06080.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF828) | chr3:1834959-1837524 REVERSE LENGTH=469;; (*ITAG) Solyc06g084290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45765445-45770016 transcript_region:SL2.40ch06:45765445..45770016- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00005390g0012.1 protein AED:0.37 eAED:0.37 QI:218|1|1|1|1|1|4|363|114; (*GB) gi|296086730|emb|CBI32365.3| (e_value=4e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|P62315|SMD1_MOUSE (e_value=2e-44) Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1;; (*TAIR) AT4G02840.1 (e_value=4e-63) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116;; (*ITAG) Solyc09g064660.2.1 (e_value=5e-65) genomic_reference:SL2.40ch09 gene_region:57577967-57581962 transcript_region:SL2.40ch09:57577967..57581962+ go_terms:GO:0005515,GO:0003729 functional_description:"Small nuclear ribonucleoprotein Sm D1 (AHRD V1 ***- B6TXH2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0003729 NbS00031527g0002.1 protein AED:0.15 eAED:0.15 QI:0|0.82|0.77|1|1|1|18|27|1848; (*GB) gi|225428013|ref|XP_002278408.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase UPL3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=0.0) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc01g111530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89516519-89527791 transcript_region:SL2.40ch01:89516519..89527791+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00031527g0003.1 protein AED:0.19 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|356540815|ref|XP_003538880.1| (e_value=7e-46) PREDICTED: thaumatin-like protein 1-like [Glycine max];; (*SWP) sp|P50699|TLPH_ARATH (e_value=4e-28) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT4G36010.2 (e_value=1e-42) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr4:17039472-17040976 REVERSE LENGTH=301;; (*ITAG) Solyc02g083790.2.1 (e_value=2e-59) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00010234g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.66|1|0|0|3|25|110; (*GB) gi|296083708|emb|CBI23697.3| (e_value=5e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23510.1 (e_value=7e-20) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=4e-32) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00010234g0003.1 protein AED:0.20 eAED:0.20 QI:154|1|0.5|1|1|1|4|0|294; (*GB) gi|350538187|ref|NP_001233819.1| (e_value=7e-169) xyloglucan endotransglucosylase-hydrolase XTH6 precursor [Solanum lycopersicum];; (*SWP) sp|P93046|XTH31_ARATH (e_value=9e-132) Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2;; (*TAIR) AT3G44990.1 (e_value=7e-133) | Symbols: XTR8, ATXTR8, XTH31 | xyloglucan endo-transglycosylase-related 8 | chr3:16447280-16448678 REVERSE LENGTH=293;; (*ITAG) Solyc11g066270.1.1 (e_value=1e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49084774-49086878 transcript_region:SL2.40ch11:49084774..49086878+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 9 (AHRD V1 ***- C0IRI2_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00023967g0003.1 protein AED:0.13 eAED:0.13 QI:80|0.75|0.8|1|1|1|5|484|327; (*GB) gi|225427185|ref|XP_002279685.1| (e_value=7e-84) PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis vinifera];; (*SWP) sp|P19684|ROC5_NICSY (e_value=9e-26) 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT2G35410.1 (e_value=4e-70) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14898341-14899590 FORWARD LENGTH=308;; (*ITAG) Solyc08g076840.2.1 (e_value=3e-132) genomic_reference:SL2.40ch08 gene_region:57908316-57911467 transcript_region:SL2.40ch08:57908316..57911467- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-- PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00023967g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|346; (*GB) gi|224071365|ref|XP_002303424.1| (e_value=3e-85) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LF64|ATL52_ARATH (e_value=1e-56) RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1;; (*TAIR) AT5G17600.1 (e_value=9e-58) | Symbols: | RING/U-box superfamily protein | chr5:5800029-5801117 REVERSE LENGTH=362;; (*ITAG) Solyc08g076830.1.1 (e_value=2e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:57905210-57906235 transcript_region:SL2.40ch08:57905210..57906235- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00049326g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|187; (*GB) gi|334145743|gb|AEF98451.1| (e_value=8e-30) BRANCHED1A isoform 2 [Solanum lycopersicum];; (*SWP) sp|Q93WI2|TB1_MAIZE (e_value=2e-21) Transcription factor TEOSINTE BRANCHED 1 OS=Zea mays GN=TB1 PE=2 SV=2;; (*TAIR) AT1G67260.2 (e_value=3e-21) | Symbols: TCP1 | TCP family transcription factor | chr1:25168152-25169307 REVERSE LENGTH=351;; (*ITAG) Solyc03g119770.2.1 (e_value=5e-32) genomic_reference:SL2.40ch03 gene_region:62381910-62383042 transcript_region:SL2.40ch03:62381910..62383042+ functional_description:"CYCLOIDEA-like (Fragment) (AHRD V1 *-*- Q2TKW2_9DIPS); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00037122g0006.1 protein AED:0.13 eAED:0.13 QI:219|0.93|0.90|0.96|0.93|0.96|33|0|1756; (*GB) gi|296089990|emb|CBI39809.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6NRP2|PSME4_XENLA (e_value=8e-37) Proteasome activator complex subunit 4 OS=Xenopus laevis GN=psme4 PE=2 SV=1;; (*TAIR) AT3G13330.1 (e_value=0.0) | Symbols: PA200 | proteasome activating protein 200 | chr3:4319804-4330061 REVERSE LENGTH=1816;; (*ITAG) Solyc07g066030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64790060-64810056 transcript_region:SL2.40ch07:64790060..64810056- go_terms:GO:0005488 functional_description:"Proteasome activator subunit 4-like (AHRD V1 **-- Q5Z876_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00037122g0005.1 protein AED:0.48 eAED:0.71 QI:0|0|0|0.66|0|0|3|0|93 NbS00007855g0003.1 protein AED:0.16 eAED:0.35 QI:0|0|0|1|0|0|3|0|95; (*GB) gi|351722731|ref|NP_001237510.1| (e_value=1e-13) uncharacterized protein LOC100499891 [Glycine max];; (*SWP) sp|P35134|UBC11_ARATH (e_value=2e-13) Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2;; (*TAIR) AT1G64230.5 (e_value=2e-15) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=190;; (*ITAG) Solyc03g007470.2.1 (e_value=3e-15) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00008036g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|1269; (*GB) gi|297735221|emb|CBI17583.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=3e-45) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT2G23770.1 (e_value=2e-152) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr2:10120242-10122080 REVERSE LENGTH=612;; (*ITAG) Solyc02g089900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46162355-46164292 transcript_region:SL2.40ch02:46162355..46164292+ go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM35_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00031437g0007.1 protein AED:0.09 eAED:0.10 QI:19|0|0|1|0|0.33|3|0|382; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=1e-94) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=8e-92) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34131.1 (e_value=4e-44) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc12g009910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3077787-3079182 transcript_region:SL2.40ch12:3077787..3079182+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00031437g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|446; (*GB) gi|356504765|ref|XP_003521165.1| (e_value=7e-120) PREDICTED: zeatin O-glucosyltransferase-like [Glycine max];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=7e-119) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=6e-52) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc12g009940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3100447-3101829 transcript_region:SL2.40ch12:3100447..3101829- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 *-*- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00031437g0006.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|165; (*GB) gi|6226510|sp|Q9ZSK5.1|ZOG_PHALU (e_value=2e-50) RecName: Full=Zeatin O-glucosyltransferase; AltName: Full=Trans-zeatin O-beta-D-glucosyltransferase;; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=6e-52) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G34138.1 (e_value=6e-34) | Symbols: UGT73B1 | UDP-glucosyl transferase 73B1 | chr4:16348267-16349858 REVERSE LENGTH=488;; (*ITAG) Solyc12g009940.1.1 (e_value=3e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3100447-3101829 transcript_region:SL2.40ch12:3100447..3101829- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 *-*- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00053677g0003.1 protein AED:0.43 eAED:0.60 QI:0|0.66|0.25|0.75|0.66|1|4|0|119; (*GB) gi|356572126|ref|XP_003554221.1| (e_value=6e-50) PREDICTED: DNA-3-methyladenine glycosylase-like [Glycine max];; (*SWP) sp|Q39147|3MG_ARATH (e_value=9e-46) DNA-3-methyladenine glycosylase OS=Arabidopsis thaliana GN=MAG PE=2 SV=1;; (*TAIR) AT3G12040.1 (e_value=7e-47) | Symbols: | DNA-3-methyladenine glycosylase (MAG) | chr3:3835349-3836781 REVERSE LENGTH=254;; (*ITAG) Solyc10g080560.1.1 (e_value=6e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61124345-61128371 transcript_region:SL2.40ch10:61124345..61128371+ go_terms:GO:0008725 functional_description:"DNA-3-methyladenine glycosylase (AHRD V1 **** B6U4R7_MAIZE); contains Interpro domain(s) IPR003180 Methylpurine-DNA glycosylase (MPG) "; GO:0008725 NbS00020781g0004.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|72; (*GB) gi|308081499|ref|NP_001183546.1| (e_value=2e-42) uncharacterized protein LOC100502113 [Zea mays];; (*SWP) sp|Q402E1|H32_LILLO (e_value=9e-44) Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3;; (*TAIR) AT5G65360.1 (e_value=8e-45) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc01g079110.2.1 (e_value=5e-45) genomic_reference:SL2.40ch01 gene_region:70680757-70681377 transcript_region:SL2.40ch01:70680757..70681377+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00020781g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|70; (*ITAG) Solyc01g086810.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:73512780-73515962 transcript_region:SL2.40ch01:73512780..73515962- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00038009g0015.1 protein AED:0.07 eAED:0.07 QI:661|0.83|0.85|1|0.83|0.85|7|306|357; (*GB) gi|297736893|emb|CBI26094.3| (e_value=1e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q1PEM5|PERK3_ARATH (e_value=5e-50) Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2;; (*TAIR) AT3G26700.1 (e_value=5e-93) | Symbols: | Protein kinase superfamily protein | chr3:9810669-9812356 FORWARD LENGTH=380;; (*ITAG) Solyc01g067510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68630191-68632873 transcript_region:SL2.40ch01:68630191..68632873+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM36_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00038009g0001.1 protein AED:0.29 eAED:0.30 QI:259|1|0.5|1|0|0|2|0|114; (*GB) gi|356527392|ref|XP_003532295.1| (e_value=7e-30) PREDICTED: uncharacterized protein LOC100786413 [Glycine max];; (*TAIR) AT5G09270.2 (e_value=4e-27) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:2879680-2880015 FORWARD LENGTH=111;; (*ITAG) Solyc06g054590.2.1 (e_value=1e-49) genomic_reference:SL2.40ch06 gene_region:33812052-33814150 transcript_region:SL2.40ch06:33812052..33814150+ functional_description:"Os01g0861000 protein (Fragment) (AHRD V1 *-*- Q0JHI8_ORYSJ)"; NbS00038009g0014.1 protein AED:0.30 eAED:0.30 QI:302|1|0.91|1|0.72|0.91|12|0|472; (*GB) gi|225432352|ref|XP_002275193.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma [Vitis vinifera];; (*SWP) sp|Q9JK24|P2R3C_MOUSE (e_value=1e-82) Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2;; (*TAIR) AT5G18580.1 (e_value=0.0) | Symbols: FASS, TON2, EMB40, FS1, GDO, FASS 2 | tonneau 2 (TON2) | chr5:6175154-6178214 FORWARD LENGTH=480;; (*ITAG) Solyc01g067500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68612561-68622917 transcript_region:SL2.40ch01:68612561..68622917+ go_terms:GO:0005515 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (AHRD V1 ***- P2R3C_RAT); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00038009g0006.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|61 NbS00017432g0014.1 protein AED:0.02 eAED:0.03 QI:0|0.91|0.84|1|0.5|0.61|13|559|977; (*GB) gi|350536633|ref|NP_001234768.1| (e_value=0.0) TCTR2 protein [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=8e-114) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G08720.1 (e_value=0.0) | Symbols: EDR1, ATEDR1 | Protein kinase superfamily protein | chr1:2774089-2779077 FORWARD LENGTH=933;; (*ITAG) Solyc01g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80387053-80397552 transcript_region:SL2.40ch01:80387053..80397552+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 *-** D7M4D4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004709 NbS00017432g0010.1 protein AED:0.16 eAED:0.15 QI:0|0.33|0|1|0.66|0.75|4|0|278; (*GB) gi|225451207|ref|XP_002271613.1| (e_value=4e-83) PREDICTED: uncharacterized N-acetyltransferase p20-like [Vitis vinifera];; (*TAIR) AT3G22560.1 (e_value=4e-61) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr3:7998915-7999442 REVERSE LENGTH=175;; (*ITAG) Solyc01g098010.2.1 (e_value=2e-97) genomic_reference:SL2.40ch01 gene_region:80401808-80402876 transcript_region:SL2.40ch01:80401808..80402876- go_terms:GO:0008152 functional_description:"Acetyltransferase GNAT family protein expressed (AHRD V1 ***- Q852L7_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00000078g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|3|0|138; (*GB) gi|332322089|emb|CCA65980.1| (e_value=3e-21) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00049711g0001.1 protein AED:0.16 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|745|190; (*GB) gi|225442227|ref|XP_002278010.1| (e_value=2e-68) PREDICTED: mitochondrial import inner membrane translocase subunit tim23-like [Vitis vinifera];; (*TAIR) AT1G72750.1 (e_value=2e-51) | Symbols: ATTIM23-2, TIM23-2 | translocase inner membrane subunit 23-2 | chr1:27383577-27384143 FORWARD LENGTH=188;; (*ITAG) Solyc03g121860.1.1 (e_value=4e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63956258-63956830 transcript_region:SL2.40ch03:63956258..63956830- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit tim23 (AHRD V1 ***- B6T238_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00006101g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|225454115|ref|XP_002269352.1| (e_value=4e-61) PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZTZ7|KEA1_ARATH (e_value=2e-57) K(+) efflux antiporter 1, chloroplastic OS=Arabidopsis thaliana GN=KEA1 PE=1 SV=2;; (*TAIR) AT1G01790.1 (e_value=2e-58) | Symbols: KEA1, ATKEA1 | K+ efflux antiporter 1 | chr1:284781-290869 FORWARD LENGTH=1193;; (*ITAG) Solyc01g094290.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00045461g0014.1 protein AED:0.17 eAED:0.17 QI:0|0.83|0.57|1|0.83|0.85|7|0|619; (*GB) gi|3127045|gb|AAC39455.1| (e_value=0.0) bHLH transcription factor JAF13 [Petunia x hybrida];; (*SWP) sp|Q9FN69|GL3_ARATH (e_value=2e-156) Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1;; (*TAIR) AT5G41315.1 (e_value=1e-157) | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:16529457-16532866 FORWARD LENGTH=637;; (*ITAG) Solyc08g081140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61386802-61391666 transcript_region:SL2.40ch08:61386802..61391666+ go_terms:GO:0003700,GO:0042802 functional_description:"Myc-like anthocyanin regulatory protein (AHRD V1 ***- Q675M5_9ASTE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00045461g0017.1 protein AED:0.11 eAED:0.12 QI:0|0.57|0.25|1|0.71|0.5|8|0|819; (*GB) gi|224130284|ref|XP_002320799.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT2G45900.1 (e_value=4e-25) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:18886069-18888674 REVERSE LENGTH=720;; (*ITAG) Solyc08g081160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61399696-61403558 transcript_region:SL2.40ch08:61399696..61403558- functional_description:"( related) (AHRD V1 *-*- Q2HTJ8_MEDTR)"; NbS00045461g0012.1 protein AED:0.26 eAED:0.26 QI:0|0.37|0.22|0.88|0.5|0.55|9|0|559; (*GB) gi|225426434|ref|XP_002274590.1| (e_value=0.0) PREDICTED: GMP synthase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|Q89N53|GUAA_BRAJA (e_value=2e-154) GMP synthase [glutamine-hydrolyzing] OS=Bradyrhizobium japonicum (strain USDA 110) GN=guaA PE=3 SV=1;; (*TAIR) AT1G63660.1 (e_value=0.0) | Symbols: | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative | chr1:23604127-23607080 REVERSE LENGTH=534;; (*ITAG) Solyc08g081150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61392906-61396045 transcript_region:SL2.40ch08:61392906..61396045- go_terms:GO:0019899 functional_description:"GMP synthase (AHRD V1 ***- D3KZU2_9BACT); contains Interpro domain(s) IPR001674 GMP synthase, C-terminal "; GO:0019899 NbS00008140g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|255557315|ref|XP_002519688.1| (e_value=2e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G46230.1 (e_value=3e-40) | Symbols: | Protein of unknown function, DUF538 | chr5:18742593-18743024 REVERSE LENGTH=143;; (*ITAG) Solyc02g070500.1.1 (e_value=7e-62) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34810672-34811115 transcript_region:SL2.40ch02:34810672..34811115+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00008140g0001.1 protein AED:0.27 eAED:0.27 QI:195|0|0.5|1|0|0.5|2|0|383; (*GB) gi|356576581|ref|XP_003556409.1| (e_value=2e-163) PREDICTED: uncharacterized protein Rv2715/MT2788-like [Glycine max];; (*SWP) sp|O05235|YUGF_BACSU (e_value=6e-21) Uncharacterized hydrolase yugF OS=Bacillus subtilis (strain 168) GN=yugF PE=3 SV=1;; (*TAIR) AT5G38520.1 (e_value=2e-150) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15421605-15423234 FORWARD LENGTH=362;; (*ITAG) Solyc02g070490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34802037-34804618 transcript_region:SL2.40ch02:34802037..34804618- functional_description:"Alpha/beta hydrolase fold (AHRD V1 ***- B6SU76_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00000590g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.6|0.8|1|1|5|286|276; (*GB) gi|44917153|dbj|BAD12177.1| (e_value=0.0) 14-3-3 e-2 protein [Nicotiana tabacum];; (*SWP) sp|O49997|1433E_TOBAC (e_value=3e-170) 14-3-3-like protein E OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G38480.1 (e_value=1e-164) | Symbols: GRF3, RCI1 | general regulatory factor 3 | chr5:15410277-15411285 FORWARD LENGTH=255;; (*ITAG) Solyc03g034180.2.1 (e_value=8e-176) genomic_reference:SL2.40ch03 gene_region:10153209-10155317 transcript_region:SL2.40ch03:10153209..10155317- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00000590g0013.1 protein AED:0.08 eAED:0.18 QI:0|0.5|0|1|0.5|0.33|3|0|238; (*GB) gi|297802282|ref|XP_002869025.1| (e_value=1e-64) minor allergen [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P0A8G8|WRBA_SHIFL (e_value=1e-31) Flavoprotein WrbA OS=Shigella flexneri GN=wrbA PE=3 SV=2;; (*TAIR) AT4G36750.1 (e_value=1e-66) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc03g034140.2.1 (e_value=9e-74) genomic_reference:SL2.40ch03 gene_region:10112093-10115080 transcript_region:SL2.40ch03:10112093..10115080+ go_terms:GO:0010181,GO:0050625 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0010181,GO:0050625 NbS00000590g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.87|0.88|1|1|1|9|247|273; (*GB) gi|225451976|ref|XP_002283351.1| (e_value=1e-104) PREDICTED: thylakoid membrane protein slr0575 [Vitis vinifera];; (*SWP) sp|Q55403|Y575_SYNY3 (e_value=5e-27) Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1;; (*TAIR) AT5G38660.1 (e_value=2e-98) | Symbols: APE1 | acclimation of photosynthesis to environment | chr5:15473285-15475497 REVERSE LENGTH=286;; (*ITAG) Solyc03g034170.2.1 (e_value=2e-124) genomic_reference:SL2.40ch03 gene_region:10147034-10152883 transcript_region:SL2.40ch03:10147034..10152883+ functional_description:"Uncharacterized conserved membrane protein (AHRD V1 *--- A5GSC9_SYNR3)"; NbS00059792g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|247; (*GB) gi|226088538|dbj|BAH37015.1| (e_value=1e-156) NtRab11D [Nicotiana tabacum];; (*SWP) sp|Q40522|RB11D_TOBAC (e_value=1e-157) Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1;; (*TAIR) AT5G65270.1 (e_value=5e-137) | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226;; (*ITAG) Solyc11g010100.1.1 (e_value=3e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00059792g0009.1 protein AED:0.33 eAED:0.41 QI:0|0|0.25|1|0.33|0.75|4|184|251; (*GB) gi|224089553|ref|XP_002308753.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g015120.2.1 (e_value=2e-46) genomic_reference:SL2.40ch04 gene_region:5290310-5292227 transcript_region:SL2.40ch04:5290310..5292227+ functional_description:"U-box domain containing protein expressed (AHRD V1 *--- Q10T52_ORYSJ)"; NbS00021882g0005.1 protein AED:0.06 eAED:0.06 QI:204|1|1|1|0.83|0.85|7|266|639; (*GB) gi|225430488|ref|XP_002285526.1| (e_value=0.0) PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera];; (*SWP) sp|A5D7E2|TM9S4_BOVIN (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2;; (*TAIR) AT5G25100.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:8648374-8651015 REVERSE LENGTH=644;; (*ITAG) Solyc08g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1356285-1362353 transcript_region:SL2.40ch08:1356285..1362353- go_terms:GO:0005515 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 ***- B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515 NbS00022556g0005.1 protein AED:0.30 eAED:0.30 QI:197|0.66|0.5|1|0.33|0.5|4|0|442; (*GB) gi|297744154|emb|CBI37124.3| (e_value=5e-129) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G06210.1 (e_value=4e-103) | Symbols: | ENTH/VHS/GAT family protein | chr1:1897567-1898986 FORWARD LENGTH=383;; (*ITAG) Solyc09g025240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19262373-19270577 transcript_region:SL2.40ch09:19262373..19270577- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein hse1 (AHRD V1 *--- C5JNH1_AJEDS); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00025492g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|504; (*GB) gi|224078428|ref|XP_002305539.1| (e_value=3e-51) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q3EBZ2|SKI23_ARATH (e_value=5e-35) F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1;; (*TAIR) AT2G17030.1 (e_value=3e-36) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399108-7400650 FORWARD LENGTH=407;; (*ITAG) Solyc02g083170.2.1 (e_value=7e-152) genomic_reference:SL2.40ch02 gene_region:41252010-41253969 transcript_region:SL2.40ch02:41252010..41253969+ functional_description:"F-box family protein (AHRD V1 ***- B9MX86_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00014580g0017.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|1171; (*GB) gi|359483612|ref|XP_002272319.2| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=0.0) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g070890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35066723-35070830 transcript_region:SL2.40ch02:35066723..35070830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014580g0007.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|1|2|0|277; (*GB) gi|147767796|emb|CAN76054.1| (e_value=1e-75) hypothetical protein VITISV_036406 [Vitis vinifera];; (*SWP) sp|Q9ASX9|BH144_ARATH (e_value=1e-27) Transcription factor bHLH144 OS=Arabidopsis thaliana GN=BHLH144 PE=1 SV=1;; (*TAIR) AT1G29950.2 (e_value=1e-28) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10493461-10494216 FORWARD LENGTH=251;; (*ITAG) Solyc02g070880.1.1 (e_value=2e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35058721-35059461 transcript_region:SL2.40ch02:35058721..35059461+ go_terms:GO:0030528 functional_description:"BHLH1 transcription factor (AHRD V1 **** D6BP02_HEVBR); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0030528 NbS00014580g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|337; (*GB) gi|3036946|dbj|BAA25391.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=9e-174) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00014580g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|265; (*GB) gi|3036944|dbj|BAA25389.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=4e-177) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00014580g0005.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|3036944|dbj|BAA25389.1| (e_value=1e-167) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27493|CB22_TOBAC (e_value=3e-168) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-154) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071000.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35097630-35098427 transcript_region:SL2.40ch02:35097630..35098427+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41425_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00014580g0019.1 protein AED:0.00 eAED:0.00 QI:59|1|1|1|1|1|4|264|122; (*GB) gi|351722033|ref|NP_001236462.1| (e_value=3e-29) uncharacterized protein LOC100306539 precursor [Glycine max];; (*SWP) sp|P52409|E13B_WHEAT (e_value=4e-19) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT2G43660.2 (e_value=4e-25) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr2:18103818-18104545 REVERSE LENGTH=123;; (*ITAG) Solyc10g007510.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1843471-1845356 transcript_region:SL2.40ch10:1843471..1845356+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 ***- B6T324_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00014580g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|0.75|1|1|4|0|195; (*GB) gi|255557373|ref|XP_002519717.1| (e_value=6e-70) mitochondrial inner membrane protease subunit, putative [Ricinus communis];; (*SWP) sp|Q96LU5|IMP1L_HUMAN (e_value=5e-32) Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1;; (*TAIR) AT1G53530.1 (e_value=2e-53) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19978249-19979778 FORWARD LENGTH=168;; (*ITAG) Solyc02g070870.2.1 (e_value=3e-101) genomic_reference:SL2.40ch02 gene_region:35048115-35049836 transcript_region:SL2.40ch02:35048115..35049836- go_terms:GO:0004252,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 1 (AHRD V1 ***- B6T7U7_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004252,GO:0004222 NbS00022855g0004.1 protein AED:0.23 eAED:0.23 QI:307|1|1|1|0|0|3|0|294; (*GB) gi|224053549|ref|XP_002297867.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13250.1 (e_value=1e-28) | Symbols: | RING finger protein | chr5:4234486-4241615 FORWARD LENGTH=387;; (*ITAG) Solyc01g009720.1.1 (e_value=6e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3999505-4000841 transcript_region:SL2.40ch01:3999505..4000841- functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LC67_ARALY)"; NbS00055088g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0.83|1|0.8|0.66|6|214|262; (*GB) gi|169589|gb|AAA33847.1| (e_value=4e-118) spliceosomal protein [Solanum tuberosum];; (*SWP) sp|O22922|RU2B1_ARATH (e_value=5e-91) U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1;; (*TAIR) AT2G30260.1 (e_value=4e-92) | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B | chr2:12905557-12907434 REVERSE LENGTH=232;; (*ITAG) Solyc06g082360.2.1 (e_value=3e-114) genomic_reference:SL2.40ch06 gene_region:44492823-44498415 transcript_region:SL2.40ch06:44492823..44498415- go_terms:GO:0005515 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 ***- A8QKB2_MUSSP); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00014412g0005.1 protein AED:0.06 eAED:0.08 QI:0|0|0|1|1|1|2|0|131; (*ITAG) Solyc06g051220.1.1 (e_value=6e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30915454-30915834 transcript_region:SL2.40ch06:30915454..30915834- functional_description:"Unknown Protein (AHRD V1)"; NbS00014412g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=3e-44) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=8e-46) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-44) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=6e-47) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00014412g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|213; (*GB) gi|42559164|sp|O80360.1|RK3_TOBAC (e_value=2e-131) RecName: Full=50S ribosomal protein L3, chloroplastic; Flags: Precursor;; (*SWP) sp|O80360|RK3_TOBAC (e_value=7e-133) 50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=2 SV=1;; (*TAIR) AT2G43030.1 (e_value=1e-114) | Symbols: | Ribosomal protein L3 family protein | chr2:17894898-17895713 FORWARD LENGTH=271;; (*ITAG) Solyc06g051200.2.1 (e_value=3e-130) genomic_reference:SL2.40ch06 gene_region:30883415-30885789 transcript_region:SL2.40ch06:30883415..30885789+ go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3 (AHRD V1 ***- D7LJX0_ARALY); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00028193g0001.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|1|1|2|0|132; (*GB) gi|89276297|gb|ABD66505.1| (e_value=1e-85) actin depolymerizing factor 3 [Gossypium hirsutum];; (*SWP) sp|Q9FVI1|ADF2_PETHY (e_value=1e-82) Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1;; (*TAIR) AT5G59880.1 (e_value=1e-80) | Symbols: ADF3 | actin depolymerizing factor 3 | chr5:24120382-24121628 FORWARD LENGTH=139;; (*ITAG) Solyc06g005360.2.1 (e_value=4e-91) genomic_reference:SL2.40ch06 gene_region:372206-374775 transcript_region:SL2.40ch06:372206..374775+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 3 (AHRD V1 **** A1XJ46_GOSHI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00058070g0006.1 protein AED:0.00 eAED:0.00 QI:40|1|1|1|1|0.8|5|655|171; (*GB) gi|225437402|ref|XP_002268231.1| (e_value=8e-47) PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera];; (*TAIR) AT4G02400.1 (e_value=6e-34) | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr4:1054243-1057884 FORWARD LENGTH=855;; (*ITAG) Solyc09g005760.2.1 (e_value=6e-66) genomic_reference:SL2.40ch09 gene_region:527331-535057 transcript_region:SL2.40ch09:527331..535057+ go_terms:GO:0032040 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 *-*- B6K6T5_SCHJY); contains Interpro domain(s) IPR006709 Small-subunit processome, Utp14 "; GO:0032040 NbS00061791g0005.1 protein AED:0.35 eAED:0.35 QI:0|0.53|0.5|0.85|1|0.92|14|496|408; (*GB) gi|10798638|emb|CAC12819.1| (e_value=0.0) cysteine synthase [Nicotiana tabacum];; (*SWP) sp|Q43317|CYSK_CITLA (e_value=9e-150) Cysteine synthase OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT4G14880.4 (e_value=6e-144) | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322;; (*ITAG) Solyc01g097920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80358782-80365636 transcript_region:SL2.40ch01:80358782..80365636+ go_terms:GO:0008152,GO:0006535 functional_description:"Cysteine synthase (AHRD V1 ***- Q9FSF5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0008152,GO:0006535 NbS00061791g0008.1 protein AED:0.38 eAED:0.38 QI:70|0.5|0.66|0.66|1|1|3|0|81; (*GB) gi|255538610|ref|XP_002510370.1| (e_value=4e-29) deoxyuridine 5'-triphosphate nucleotidohydrolase, putative [Ricinus communis];; (*SWP) sp|P32518|DUT_SOLLC (e_value=1e-30) Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G46940.1 (e_value=7e-29) | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr3:17288367-17288867 REVERSE LENGTH=166;; (*ITAG) Solyc01g097970.2.1 (e_value=8e-36) genomic_reference:SL2.40ch01 gene_region:80384178-80385328 transcript_region:SL2.40ch01:80384178..80385328+ go_terms:GO:0046080 functional_description:"Deoxyuridine 5&apos-triphosphate nucleotidohydrolase (AHRD V1 ***- C1E7B9_9CHLO); contains Interpro domain(s) IPR008181 DeoxyUTP pyrophosphatase subfamily 1 "; GO:0046080 NbS00061791g0012.1 protein AED:0.15 eAED:0.22 QI:93|0.5|0.33|1|0.5|0.33|3|0|208; (*GB) gi|356535137|ref|XP_003536105.1| (e_value=1e-28) PREDICTED: late embryogenesis abundant protein D-34-like [Glycine max];; (*SWP) sp|P09444|LEA34_GOSHI (e_value=4e-22) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT5G27980.1 (e_value=3e-28) | Symbols: | Seed maturation protein | chr5:10015883-10016676 REVERSE LENGTH=192;; (*ITAG) Solyc01g097960.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:80376043-80378272 transcript_region:SL2.40ch01:80376043..80378272- functional_description:"Late embryogenesis abundant protein D-34 (AHRD V1 **-- B6UH67_MAIZE); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbS00005247g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|81; (*ITAG) Solyc03g071760.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00005639g0003.1 protein AED:0.11 eAED:0.11 QI:298|0.62|0.77|0.77|0.87|0.88|9|278|471; (*GB) gi|225432602|ref|XP_002277920.1| (e_value=1e-116) PREDICTED: cyclin-T1-4 [Vitis vinifera];; (*SWP) sp|Q2RAC5|CCT13_ORYSJ (e_value=2e-46) Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2;; (*TAIR) AT4G19600.1 (e_value=1e-45) | Symbols: CYCT1;4 | Cyclin family protein | chr4:10673619-10676532 FORWARD LENGTH=541;; (*ITAG) Solyc09g075760.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:62880222-62885972 transcript_region:SL2.40ch09:62880222..62885972+ go_terms:GO:0005515,GO:0004693 functional_description:"Cyclin T1 (AHRD V1 **** Q6EEW1_MEDTR); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; GO:0005515,GO:0004693 NbS00040697g0001.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|357484339|ref|XP_003612457.1| (e_value=1e-86) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q9C6R9|PPR66_ARATH (e_value=3e-66) Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1;; (*TAIR) AT1G31790.1 (e_value=2e-67) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11394744-11395973 REVERSE LENGTH=409;; (*ITAG) Solyc08g075500.2.1 (e_value=1e-168) genomic_reference:SL2.40ch08 gene_region:56823699-56825538 transcript_region:SL2.40ch08:56823699..56825538- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014858g0007.1 protein AED:0.08 eAED:0.08 QI:11|1|1|1|1|1|2|78|84; (*GB) gi|350539691|ref|NP_001234246.1| (e_value=5e-14) proteinase inhibitor type-2 CEVI57 precursor [Solanum lycopersicum];; (*SWP) sp|Q43502|IP23_SOLLC (e_value=1e-15) Proteinase inhibitor type-2 CEVI57 OS=Solanum lycopersicum GN=CEVI57 PE=2 SV=1;; (*ITAG) Solyc06g061210.2.1 (e_value=1e-23) genomic_reference:SL2.40ch06 gene_region:35598485-35601822 transcript_region:SL2.40ch06:35598485..35601822- go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00014858g0006.1 protein AED:0.09 eAED:0.09 QI:430|1|1|1|0.75|1|5|334|920; (*GB) gi|255578890|ref|XP_002530298.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|O22864|NLP8_ARATH (e_value=0.0) Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1;; (*TAIR) AT2G43500.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr2:18062715-18066450 FORWARD LENGTH=947;; (*ITAG) Solyc08g013900.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3261272-3266583 transcript_region:SL2.40ch08:3261272..3266583- go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DME9_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00014858g0008.1 protein AED:0.12 eAED:0.25 QI:0|0|0|1|0|0|2|0|87 NbS00014858g0105.1 protein AED:0.17 eAED:0.18 QI:0|0.66|0.28|1|0.33|0.42|7|0|581 NbS00014858g0108.1 protein AED:0.44 eAED:0.81 QI:0|0|0|1|0|0.5|2|0|59 NbS00033608g0006.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|118 NbS00033608g0005.1 protein AED:0.23 eAED:0.33 QI:0|0|0|1|1|1|4|0|452; (*GB) gi|255585507|ref|XP_002533445.1| (e_value=6e-130) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|O24585|CRI4_MAIZE (e_value=9e-116) Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1;; (*TAIR) AT3G59420.1 (e_value=4e-111) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=6e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00033608g0004.1 protein AED:0.63 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|258; (*GB) gi|225433874|ref|XP_002264936.1| (e_value=5e-26) PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera];; (*SWP) sp|Q9LX29|ACR4_ARATH (e_value=2e-21) Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1;; (*TAIR) AT3G59420.1 (e_value=1e-22) | Symbols: ACR4, CR4 | crinkly4 | chr3:21959871-21962558 REVERSE LENGTH=895;; (*ITAG) Solyc11g044940.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:36424223-36426880 transcript_region:SL2.40ch11:36424223..36426880- go_terms:GO:0004872,GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004872,GO:0006468 NbS00033608g0014.1 protein AED:0.15 eAED:0.15 QI:391|0.91|0.92|1|0.83|0.84|13|534|354; (*GB) gi|170676822|gb|ACB30546.1| (e_value=0.0) putative lysophosphatidic acid acyltransferase [Ricinus communis];; (*SWP) sp|Q53EU6|GPAT3_HUMAN (e_value=5e-74) Glycerol-3-phosphate acyltransferase 3 OS=Homo sapiens GN=AGPAT9 PE=1 SV=2;; (*TAIR) AT5G60620.1 (e_value=0.0) | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase 9 | chr5:24367266-24369647 FORWARD LENGTH=376;; (*ITAG) Solyc08g082340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62324773-62331770 transcript_region:SL2.40ch08:62324773..62331770+ go_terms:GO:0004366,GO:0005515 functional_description:"Glycerol-3-phosphate acyltransferase 3 (AHRD V1 **** GPAT3_HUMAN); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0005515 NbS00003968g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|97; (*GB) gi|225457662|ref|XP_002275896.1| (e_value=9e-55) PREDICTED: uncharacterized protein LOC100259899 isoform 1 [Vitis vinifera];; (*TAIR) AT2G33585.1 (e_value=1e-45) | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14223403-14224167 REVERSE LENGTH=193;; (*ITAG) Solyc04g082800.2.1 (e_value=5e-56) genomic_reference:SL2.40ch04 gene_region:63934734-63935589 transcript_region:SL2.40ch04:63934734..63935589+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003968g0013.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|293; (*GB) gi|255539338|ref|XP_002510734.1| (e_value=3e-44) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=3e-33) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT1G76500.1 (e_value=2e-37) | Symbols: SOB3, AHL29 | Predicted AT-hook DNA-binding family protein | chr1:28705532-28706440 FORWARD LENGTH=302;; (*ITAG) Solyc04g082810.2.1 (e_value=6e-44) genomic_reference:SL2.40ch04 gene_region:63940809-63941997 transcript_region:SL2.40ch04:63940809..63941997+ go_terms:GO:0003680,GO:0003690 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680,GO:0003690 NbS00003968g0014.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.55|0.88|1|0.88|9|621|222; (*GB) gi|346230643|gb|AEO22030.1| (e_value=5e-109) ARID and Hsp20 domains containing protein [Lotus japonicus];; (*SWP) sp|Q0WNR6|ARID5_ARATH (e_value=1e-100) AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=2 SV=1;; (*TAIR) AT1G76510.2 (e_value=9e-102) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr1:28708927-28712498 REVERSE LENGTH=434;; (*ITAG) Solyc04g082820.2.1 (e_value=1e-140) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00003968g0015.1 protein AED:0.23 eAED:0.27 QI:0|0.6|0.33|0.66|0.6|0.33|6|0|428; (*GB) gi|255539340|ref|XP_002510735.1| (e_value=1e-34) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q940Y3|ARID3_ARATH (e_value=1e-34) AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1;; (*TAIR) AT2G17410.1 (e_value=9e-36) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr2:7559869-7563474 FORWARD LENGTH=786;; (*ITAG) Solyc04g082820.2.1 (e_value=1e-131) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00011278g0013.1 protein AED:0.14 eAED:0.14 QI:185|0.57|0.75|1|0.71|0.75|8|646|293; (*GB) gi|317106728|dbj|BAJ53224.1| (e_value=1e-163) JHL06P13.3 [Jatropha curcas];; (*SWP) sp|Q9LFN6|RH56_ARATH (e_value=8e-160) DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2;; (*TAIR) AT5G11170.2 (e_value=1e-162) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr5:3554272-3556646 FORWARD LENGTH=344;; (*ITAG) Solyc08g061000.2.1 (e_value=3e-168) genomic_reference:SL2.40ch08 gene_region:43548025-43554331 transcript_region:SL2.40ch08:43548025..43554331- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q1HR75_AEDAE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00011278g0014.1 protein AED:0.07 eAED:0.14 QI:0|0.8|0.75|1|0.6|0.56|16|543|716; (*GB) gi|225430251|ref|XP_002282599.1| (e_value=0.0) PREDICTED: lactation elevated protein 1 [Vitis vinifera];; (*SWP) sp|Q3V384|LACE1_MOUSE (e_value=4e-43) Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1;; (*TAIR) AT2G25530.1 (e_value=0.0) | Symbols: | AFG1-like ATPase family protein | chr2:10863059-10866597 FORWARD LENGTH=655;; (*ITAG) Solyc06g066090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37815304-37826469 transcript_region:SL2.40ch06:37815304..37826469+ go_terms:GO:0016887 functional_description:"AFG1-family ATPase (AHRD V1 *-** D1CU44_9RHIZ); contains Interpro domain(s) IPR005654 ATPase, AFG1-like "; GO:0016887 NbS00011278g0004.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|0|0|2|92|233; (*GB) gi|357478059|ref|XP_003609315.1| (e_value=8e-126) Solute carrier family 35 member C2 [Medicago truncatula];; (*SWP) sp|Q9SUV2|PT432_ARATH (e_value=1e-121) Probable sugar phosphate/phosphate translocator At4g32390 OS=Arabidopsis thaliana GN=At4g32390 PE=2 SV=1;; (*TAIR) AT4G32390.1 (e_value=9e-123) | Symbols: | Nucleotide-sugar transporter family protein | chr4:15636550-15637602 FORWARD LENGTH=350;; (*ITAG) Solyc08g060940.1.1 (e_value=1e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:43005135-43006190 transcript_region:SL2.40ch08:43005135..43006190- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00011278g0005.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|602; (*GB) gi|359476124|ref|XP_002282605.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=1e-166) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=1e-167) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc06g066080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37811983-37813806 transcript_region:SL2.40ch06:37811983..37813806- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00011278g0018.1 protein AED:0.22 eAED:0.22 QI:213|1|1|1|0.75|1|5|391|127; (*GB) gi|255548958|ref|XP_002515535.1| (e_value=4e-64) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O22969|Y2416_ARATH (e_value=3e-60) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT2G34160.1 (e_value=2e-61) | Symbols: | Alba DNA/RNA-binding protein | chr2:14426283-14427220 FORWARD LENGTH=130;; (*ITAG) Solyc06g066100.2.1 (e_value=7e-87) genomic_reference:SL2.40ch06 gene_region:37826995-37830559 transcript_region:SL2.40ch06:37826995..37830559- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00003354g0008.1 protein AED:0.15 eAED:0.16 QI:112|0.94|0.89|1|0.83|0.84|19|334|754; (*GB) gi|255538978|ref|XP_002510554.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9ZRZ8|RH28_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1;; (*TAIR) AT4G16630.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr4:9362176-9366449 REVERSE LENGTH=789;; (*ITAG) Solyc04g081580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63118443-63124879 transcript_region:SL2.40ch04:63118443..63124879+ go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00003354g0011.1 protein AED:0.28 eAED:0.33 QI:0|0|0|0.75|0|0.25|4|0|321; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-49) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g097030.2.1 (e_value=1e-11) genomic_reference:SL2.40ch01 gene_region:79765927-79769298 transcript_region:SL2.40ch01:79765927..79769298- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SR14_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00003354g0013.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|4|0|1045; (*GB) gi|255538980|ref|XP_002510555.1| (e_value=9e-121) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24200.1 (e_value=4e-54) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr4:12556927-12559929 REVERSE LENGTH=1000;; (*ITAG) Solyc12g089320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62888275-62891286 transcript_region:SL2.40ch12:62888275..62891286- functional_description:"Bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *-*- Q6Z809_ORYSJ)"; NbS00003354g0010.1 protein AED:0.42 eAED:0.84 QI:0|0|0|1|0|0|4|0|93 NbS00007165g0005.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0|0.66|1|1|3|0|91; (*ITAG) Solyc10g074840.1.1 (e_value=3e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:57866678-57867705 transcript_region:SL2.40ch10:57866678..57867705- functional_description:"Unknown Protein (AHRD V1)"; NbS00026516g0013.1 protein AED:0.29 eAED:0.29 QI:0|1|0.66|1|1|1|3|0|178; (*GB) gi|297746263|emb|CBI16319.3| (e_value=5e-91) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SKN3|CSPL6_ARATH (e_value=2e-87) CASP-like protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1;; (*TAIR) AT2G28370.1 (e_value=1e-88) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:12132092-12133447 FORWARD LENGTH=179;; (*ITAG) Solyc11g069480.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51157067-51160290 transcript_region:SL2.40ch11:51157067..51160290- functional_description:"UPF0497 membrane protein At2g28370 (AHRD V1 ***- U4977_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00026516g0019.1 protein AED:0.21 eAED:0.21 QI:0|0.94|0.94|1|0.82|0.83|18|236|839; (*GB) gi|297746262|emb|CBI16318.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SE43|REV_ARATH (e_value=0.0) Homeobox-leucine zipper protein REVOLUTA OS=Arabidopsis thaliana GN=REV PE=1 SV=2;; (*TAIR) AT5G60690.1 (e_value=0.0) | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr5:24397734-24401933 FORWARD LENGTH=842;; (*ITAG) Solyc11g069470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51150759-51156271 transcript_region:SL2.40ch11:51150759..51156271+ go_terms:GO:0006355,GO:0045449 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0006355,GO:0045449 NbS00026516g0015.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|3|0|157; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-44) hypothetical protein [Nicotiana tabacum]; NbS00026516g0017.1 protein AED:0.37 eAED:0.42 QI:25|0|0|1|0|0|3|0|104 NbS00038767g0008.1 protein AED:0.24 eAED:0.24 QI:286|1|0.83|1|0.8|0.66|6|0|817; (*GB) gi|225465743|ref|XP_002264820.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255521 [Vitis vinifera];; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc12g006420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:903491-908840 transcript_region:SL2.40ch12:903491..908840- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00038767g0011.1 protein AED:0.19 eAED:0.26 QI:0|0.5|0.42|1|0.83|0.85|7|0|312; (*GB) gi|225444161|ref|XP_002270765.1| (e_value=5e-136) PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=7e-132) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=6e-133) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc12g006410.1.1 (e_value=4e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:898344-901102 transcript_region:SL2.40ch12:898344..901102- go_terms:GO:0006012,GO:0044237,GO:0008152 functional_description:"UDP-glucose 4-epimerase (AHRD V1 ***- B3XXH6_9BACT); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0006012,GO:0044237,GO:0008152 NbS00038767g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|111; (*GB) gi|255560048|ref|XP_002521042.1| (e_value=1e-15) UDP-glucosyltransferase, putative [Ricinus communis];; (*ITAG) Solyc12g006430.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00038767g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|69; (*ITAG) Solyc12g006400.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:895890-896690 transcript_region:SL2.40ch12:895890..896690+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003295g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|225428418|ref|XP_002283820.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100264004 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=2e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc01g109800.2.1 (e_value=4e-52) genomic_reference:SL2.40ch01 gene_region:88423490-88424684 transcript_region:SL2.40ch01:88423490..88424684+ functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 *-*- Q9FJZ5_ARATH)"; NbS00003295g0108.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|0|0.5|2|0|86 NbS00012869g0001.1 protein AED:0.00 eAED:0.00 QI:3042|1|0.5|1|0|0.5|2|0|139; (*GB) gi|147794453|emb|CAN64859.1| (e_value=1e-27) hypothetical protein VITISV_030494 [Vitis vinifera];; (*TAIR) AT4G09830.1 (e_value=2e-13) | Symbols: | Uncharacterised conserved protein UCP009193 | chr4:6188866-6190591 FORWARD LENGTH=191;; (*ITAG) Solyc12g056630.1.1 (e_value=1e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47968363-47975402 transcript_region:SL2.40ch12:47968363..47975402- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00012869g0006.1 protein AED:0.36 eAED:0.50 QI:29|0|0|1|0|0|3|0|114; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-19) hypothetical protein [Nicotiana tabacum]; NbS00024190g0010.1 protein AED:0.01 eAED:0.01 QI:143|1|1|1|1|1|2|306|207; (*GB) gi|75278818|sp|O80363.1|RK17_TOBAC (e_value=5e-132) RecName: Full=50S ribosomal protein L17, chloroplastic; AltName: Full=CL17; Flags: Precursor;; (*SWP) sp|O80363|RK17_TOBAC (e_value=1e-133) 50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1;; (*TAIR) AT3G54210.1 (e_value=2e-96) | Symbols: | Ribosomal protein L17 family protein | chr3:20067672-20068385 REVERSE LENGTH=211;; (*ITAG) Solyc06g082760.2.1 (e_value=8e-128) genomic_reference:SL2.40ch06 gene_region:44743556-44745679 transcript_region:SL2.40ch06:44743556..44745679- go_terms:GO:0005840 functional_description:"50S ribosomal protein L17 (AHRD V1 ***- B4FZB4_MAIZE); contains Interpro domain(s) IPR000456 Ribosomal protein L17 "; GO:0005840 NbS00024190g0015.1 protein AED:0.08 eAED:0.10 QI:0|0|0|0.83|0.4|0.33|6|0|1441; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00024190g0017.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|1|0.66|3|0|124; (*GB) gi|388507834|gb|AFK41983.1| (e_value=3e-36) unknown [Medicago truncatula];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=2e-37) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=1e-38) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc06g082740.2.1 (e_value=6e-62) genomic_reference:SL2.40ch06 gene_region:44739001-44741078 transcript_region:SL2.40ch06:44739001..44741078+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00024190g0016.1 protein AED:0.45 eAED:0.52 QI:0|0|0|1|0|0|4|0|191; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=3e-76) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*SWP) sp|O75643|U520_HUMAN (e_value=3e-56) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=9e-72) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=7e-60) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00018298g0016.1 protein AED:0.26 eAED:0.26 QI:312|0.84|0.71|1|0.76|0.71|14|0|628; (*GB) gi|225435323|ref|XP_002285170.1| (e_value=0.0) PREDICTED: vacuolar fusion protein MON1 homolog A [Vitis vinifera];; (*SWP) sp|Q86VX9|MON1A_HUMAN (e_value=7e-75) Vacuolar fusion protein MON1 homolog A OS=Homo sapiens GN=MON1A PE=1 SV=2;; (*TAIR) AT2G28390.1 (e_value=0.0) | Symbols: | SAND family protein | chr2:12139836-12143375 REVERSE LENGTH=607;; (*ITAG) Solyc03g115810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59451563-59462697 transcript_region:SL2.40ch03:59451563..59462697+ functional_description:"Vacuolar fusion protein mon1 (AHRD V1 ***- C5JTA2_AJEDS); contains Interpro domain(s) IPR004353 Vacuolar fusion protein MON1 "; NbS00018298g0010.1 protein AED:0.30 eAED:0.32 QI:496|1|0.75|1|0.33|0.5|4|0|173; (*GB) gi|296090449|emb|CBI40268.3| (e_value=6e-75) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=2e-59) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT4G34215.2 (e_value=2e-60) | Symbols: | Domain of unknown function (DUF303) | chr4:16380203-16381192 REVERSE LENGTH=260;; (*ITAG) Solyc06g073240.2.1 (e_value=8e-90) genomic_reference:SL2.40ch06 gene_region:41521151-41523182 transcript_region:SL2.40ch06:41521151..41523182- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00018298g0020.1 protein AED:0.46 eAED:0.46 QI:0|0.83|0.57|0.85|0.83|0.71|7|0|229; (*GB) gi|2499728|sp|Q43843.1|RPE_SOLTU (e_value=3e-163) RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor;; (*SWP) sp|Q43843|RPE_SOLTU (e_value=7e-165) Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G61410.2 (e_value=2e-155) | Symbols: RPE | D-ribulose-5-phosphate-3-epimerase | chr5:24684085-24685836 REVERSE LENGTH=281;; (*ITAG) Solyc03g115820.2.1 (e_value=1e-165) genomic_reference:SL2.40ch03 gene_region:59463075-59469502 transcript_region:SL2.40ch03:59463075..59469502- go_terms:GO:0005515 functional_description:"Ribulose-5-phosphate-3-epimerase (AHRD V1 ***- Q8S4X2_PEA); contains Interpro domain(s) IPR000056 Ribulose-phosphate 3-epimerase "; GO:0005515 NbS00059141g0006.1 protein AED:0.13 eAED:0.15 QI:0|0.6|0.33|1|1|1|6|0|443; (*GB) gi|225452938|ref|XP_002284191.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268024 isoform 1 [Vitis vinifera];; (*TAIR) AT3G01060.1 (e_value=0.0) | Symbols: | unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). | chr3:16831-18782 REVERSE LENGTH=455;; (*ITAG) Solyc03g013240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:3967763-3971439 transcript_region:SL2.40ch03:3967763..3971439+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q01H71_OSTTA)"; NbS00059141g0009.1 protein AED:0.53 eAED:0.89 QI:0|0|0|0.75|1|1|4|0|121; (*GB) gi|255570226|ref|XP_002526073.1| (e_value=3e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G29280.1 (e_value=4e-20) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11236705-11237947 REVERSE LENGTH=178;; (*ITAG) Solyc03g013250.2.1 (e_value=9e-26) genomic_reference:SL2.40ch03 gene_region:3978727-3980731 transcript_region:SL2.40ch03:3978727..3980731- functional_description:"Genomic DNA chromosome 3 P1 clone MMF24 (AHRD V1 ***- Q9LHJ6_ARATH)"; NbS00050217g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.6|1|0.5|0.4|5|184|333; (*GB) gi|350535805|ref|NP_001234470.1| (e_value=0.0) xyloglucan endotransglucosylase-hydrolase XTH5 precursor [Solanum lycopersicum];; (*SWP) sp|Q38908|XTH30_ARATH (e_value=2e-139) Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2;; (*TAIR) AT1G32170.1 (e_value=1e-140) | Symbols: XTR4, XTH30 | xyloglucan endotransglucosylase/hydrolase 30 | chr1:11575434-11577776 FORWARD LENGTH=343;; (*ITAG) Solyc01g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72898947-72902179 transcript_region:SL2.40ch01:72898947..72902179+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 14 (AHRD V1 **** C0IRH3_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00031845g0002.1 protein AED:0.00 eAED:0.00 QI:40|1|1|1|0.5|0.66|3|215|292; (*GB) gi|224055615|ref|XP_002298567.1| (e_value=8e-145) predicted protein [Populus trichocarpa];; (*TAIR) AT3G01660.1 (e_value=1e-123) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:245532-246432 FORWARD LENGTH=273;; (*ITAG) Solyc02g093550.2.1 (e_value=9e-175) genomic_reference:SL2.40ch02 gene_region:48960510-48961856 transcript_region:SL2.40ch02:48960510..48961856+ go_terms:GO:0008152 functional_description:"Methyltransferase type 11 (AHRD V1 ***- C7QSM0_CYAP0); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00044961g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|108; (*GB) gi|225432558|ref|XP_002280998.1| (e_value=3e-37) PREDICTED: 3-ketodihydrosphingosine reductase [Vitis vinifera];; (*TAIR) AT5G19200.1 (e_value=3e-35) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6458995-6460690 FORWARD LENGTH=331;; (*ITAG) Solyc06g054340.1.1 (e_value=2e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33633622-33634588 transcript_region:SL2.40ch06:33633622..33634588- go_terms:GO:0004668 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A9B3A1_HERA2); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004668 NbS00036198g0002.1 protein AED:0.12 eAED:0.12 QI:0|1|0.83|1|1|1|6|342|672; (*GB) gi|296089890|emb|CBI39709.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G55600.3 (e_value=0.0) | Symbols: | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr5:22522232-22524796 REVERSE LENGTH=663;; (*ITAG) Solyc07g065370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64381656-64386573 transcript_region:SL2.40ch07:64381656..64386573- go_terms:GO:0003677,GO:0003723 functional_description:"Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *--- Q69J33_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003677,GO:0003723 NbS00036198g0001.1 protein AED:0.11 eAED:0.13 QI:0|0.5|0.33|1|1|1|3|0|148; (*GB) gi|350538565|ref|NP_001234349.1| (e_value=5e-86) zinc transporter-like precursor [Solanum lycopersicum];; (*SWP) sp|Q94EG9|ZIP11_ARATH (e_value=2e-63) Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1;; (*TAIR) AT1G55910.1 (e_value=2e-64) | Symbols: ZIP11 | zinc transporter 11 precursor | chr1:20906161-20907225 FORWARD LENGTH=326;; (*ITAG) Solyc07g065380.2.1 (e_value=1e-88) genomic_reference:SL2.40ch07 gene_region:64388616-64391033 transcript_region:SL2.40ch07:64388616..64391033- go_terms:GO:0008324 functional_description:"Zinc transporter 2 (AHRD V1 **** B6UH65_MAIZE); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0008324 NbS00036198g0011.1 protein AED:0.07 eAED:0.08 QI:0|0.6|0.33|1|0.6|0.5|6|0|360; (*GB) gi|255563450|ref|XP_002522727.1| (e_value=1e-132) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FM79|PME62_ARATH (e_value=9e-121) Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1;; (*TAIR) AT5G55590.1 (e_value=7e-122) | Symbols: QRT1 | Pectin lyase-like superfamily protein | chr5:22519911-22521699 FORWARD LENGTH=380;; (*ITAG) Solyc07g065360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64378881-64381522 transcript_region:SL2.40ch07:64378881..64381522+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S9Q8_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00019867g0010.1 protein AED:0.09 eAED:0.13 QI:0|0.5|0|1|1|1|3|0|183; (*ITAG) Solyc12g021200.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:14782226-14783429 transcript_region:SL2.40ch12:14782226..14783429- functional_description:"Protein binding protein (AHRD V1 *-*- B6TVD0_MAIZE)"; NbS00019867g0006.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|1|1|2|0|283; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=6e-108) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=2e-56) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G14470.1 (e_value=8e-31) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc05g043420.1.1 (e_value=5e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:55463046-55467606 transcript_region:SL2.40ch05:55463046..55467606- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00019867g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|115381106|gb|ABI96217.1| (e_value=7e-34) NBS-LRR resistance protein-like protein [Solanum lycopersicum];; (*ITAG) Solyc06g008790.2.1 (e_value=1e-36) genomic_reference:SL2.40ch06 gene_region:2722296-2726237 transcript_region:SL2.40ch06:2722296..2726237+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00019867g0004.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.4|1|1|5|0|114 NbS00026847g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.42|1|0.33|0.28|7|0|399; (*GB) gi|224134987|ref|XP_002327539.1| (e_value=0.0) cytochrome P450 probable 6-deoxoteasterone to 3-dehydro 6-deoxoteasterone or teasterone to 3-dehydro teasterone [Populus trichocarpa];; (*SWP) sp|Q94IA6|C90D1_ARATH (e_value=8e-159) 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=CYP90D1 PE=2 SV=1;; (*TAIR) AT3G13730.1 (e_value=6e-160) | Symbols: CYP90D1 | cytochrome P450, family 90, subfamily D, polypeptide 1 | chr3:4498330-4500836 REVERSE LENGTH=491;; (*ITAG) Solyc03g121510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63651958-63655007 transcript_region:SL2.40ch03:63651958..63655007- go_terms:GO:0016709,GO:0019825 functional_description:"Cytochrome P450"; GO:0016709,GO:0019825 NbS00026847g0004.1 protein AED:0.39 eAED:0.40 QI:0|1|0.66|1|1|1|3|0|188; (*GB) gi|388521193|gb|AFK48658.1| (e_value=3e-44) unknown [Lotus japonicus];; (*TAIR) AT1G55160.2 (e_value=2e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:20578804-20579803 FORWARD LENGTH=137;; (*ITAG) Solyc03g121520.2.1 (e_value=7e-57) genomic_reference:SL2.40ch03 gene_region:63658315-63662290 transcript_region:SL2.40ch03:63658315..63662290- functional_description:"Unknown Protein (AHRD V1)"; NbS00007542g0005.1 protein AED:0.32 eAED:0.32 QI:316|1|1|1|0.88|0.8|10|389|450; (*GB) gi|225459348|ref|XP_002285804.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=8e-37) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT1G78070.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:29355219-29358368 FORWARD LENGTH=449;; (*ITAG) Solyc04g072890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57438553-57443981 transcript_region:SL2.40ch04:57438553..57443981+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KN06_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00034897g0005.1 protein AED:0.08 eAED:0.19 QI:0|0|0|1|0|0.2|5|0|437; (*GB) gi|75248609|sp|Q8W1E0.1|R1A_SOLDE (e_value=3e-114) RecName: Full=Late blight resistance protein R1-A; Short=Protein R1;; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=9e-116) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=2e-16) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g007350.1.1 (e_value=2e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00037999g0007.1 protein AED:0.26 eAED:0.28 QI:0|0|0.5|1|0|0.5|2|0|708; (*GB) gi|110559308|gb|ABG75910.1| (e_value=0.0) phenylalanine ammonia-lyase 1 [Nicotiana attenuata];; (*SWP) sp|P45733|PAL3_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G37040.1 (e_value=0.0) | Symbols: PAL1, ATPAL1 | PHE ammonia lyase 1 | chr2:15557602-15560237 REVERSE LENGTH=725;; (*ITAG) Solyc10g086180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00017901g0005.1 protein AED:0.08 eAED:0.08 QI:529|1|1|1|1|1|6|161|907; (*GB) gi|357933575|dbj|BAL15054.1| (e_value=0.0) glutamate receptor 3.1 [Solanum lycopersicum];; (*SWP) sp|Q9SDQ4|GLR37_ARATH (e_value=0.0) Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2;; (*TAIR) AT2G32400.1 (e_value=0.0) | Symbols: GLR5, GLR3.7, ATGLR3.7 | glutamate receptor 5 | chr2:13752665-13756233 REVERSE LENGTH=921;; (*ITAG) Solyc07g052390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58227013-58231762 transcript_region:SL2.40ch07:58227013..58231762+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9GU65_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00017901g0003.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|4|0|94 NbS00003407g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.62|0.87|1|1|8|173|262; (*GB) gi|225429402|ref|XP_002275382.1| (e_value=1e-172) PREDICTED: serine/threonine-protein kinase Aurora-1 [Vitis vinifera];; (*SWP) sp|Q9M077|AUR1_ARATH (e_value=3e-165) Serine/threonine-protein kinase Aurora-1 OS=Arabidopsis thaliana GN=AUR1 PE=2 SV=1;; (*TAIR) AT4G32830.1 (e_value=3e-166) | Symbols: AtAUR1, AUR1 | ataurora1 | chr4:15842557-15844354 FORWARD LENGTH=294;; (*ITAG) Solyc12g095870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63323065-63326198 transcript_region:SL2.40ch12:63323065..63326198+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 6 (AHRD V1 ***- B5X2V6_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003407g0008.1 protein AED:0.29 eAED:0.33 QI:0|0.77|0.7|1|0.88|0.8|10|0|392; (*GB) gi|356507939|ref|XP_003522720.1| (e_value=0.0) PREDICTED: 6-phosphofructokinase 3-like [Glycine max];; (*SWP) sp|Q94AA4|K6PF3_ARATH (e_value=0.0) 6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1;; (*TAIR) AT4G26270.1 (e_value=0.0) | Symbols: PFK3 | phosphofructokinase 3 | chr4:13301094-13304030 REVERSE LENGTH=489;; (*ITAG) Solyc12g095880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63327094-63335562 transcript_region:SL2.40ch12:63327094..63335562- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00003407g0113.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|297 NbS00003407g0112.1 protein AED:0.23 eAED:0.23 QI:382|1|1|1|0.87|0.77|9|71|388 NbS00006545g0010.1 protein AED:0.23 eAED:0.25 QI:184|0.5|0.57|1|0.5|0.57|7|14|385; (*GB) gi|297743651|emb|CBI36534.3| (e_value=6e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LLY4|LPAT1_BRANA (e_value=5e-114) 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic OS=Brassica napus GN=LPAT1 PE=2 SV=1;; (*TAIR) AT4G30580.1 (e_value=4e-109) | Symbols: ATS2, EMB1995, LPAT1 | Phospholipid/glycerol acyltransferase family protein | chr4:14932515-14934489 REVERSE LENGTH=356;; (*ITAG) Solyc07g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:458171-464650 transcript_region:SL2.40ch07:458171..464650+ go_terms:GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** A0LIN1_SYNFM); contains Interpro domain(s) IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase "; GO:0003841 NbS00006545g0009.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|1|6|0|759; (*GB) gi|255577001|ref|XP_002529385.1| (e_value=0.0) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q8RWS9|CNGC5_ARATH (e_value=0.0) Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1;; (*TAIR) AT5G57940.3 (e_value=0.0) | Symbols: ATCNGC5, CNGC5 | cyclic nucleotide gated channel 5 | chr5:23457116-23460439 FORWARD LENGTH=710;; (*ITAG) Solyc07g005590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:481459-487527 transcript_region:SL2.40ch07:481459..487527+ go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00043745g0008.1 protein AED:0.07 eAED:0.08 QI:0|0.2|0.33|0.83|0.4|0.33|6|0|321; (*GB) gi|356562798|ref|XP_003549655.1| (e_value=3e-14) PREDICTED: uncharacterized protein LOC100801800 [Glycine max];; (*ITAG) Solyc06g071140.2.1 (e_value=5e-24) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00043745g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.68|0.64|1|1|1|17|0|1696; (*GB) gi|225456629|ref|XP_002266656.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256959 [Vitis vinifera];; (*SWP) sp|Q8BL06|UBP54_MOUSE (e_value=2e-34) Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2;; (*TAIR) AT3G47890.1 (e_value=0.0) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc06g071120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40097356-40108564 transcript_region:SL2.40ch06:40097356..40108564+ go_terms:GO:0006511,GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q10RB2_ORYSJ); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00044578g0001.1 protein AED:0.01 eAED:0.01 QI:14|1|0.5|1|0|0|2|49|20 NbS00029939g0004.1 protein AED:0.10 eAED:0.10 QI:136|0.85|0.62|1|0.71|0.75|8|0|374; (*GB) gi|225449388|ref|XP_002282470.1| (e_value=7e-159) PREDICTED: X-linked retinitis pigmentosa GTPase regulator [Vitis vinifera];; (*SWP) sp|Q9UII4|HERC5_HUMAN (e_value=2e-12) E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2;; (*TAIR) AT3G55580.1 (e_value=5e-129) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:20612766-20615730 FORWARD LENGTH=488;; (*ITAG) Solyc05g052950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62268456-62274027 transcript_region:SL2.40ch05:62268456..62274027- go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 *--- B9PXR3_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00012874g0007.1 protein AED:0.75 eAED:0.75 QI:250|0|0.5|0.5|0|0|2|0|39 NbS00013836g0001.1 protein AED:0.16 eAED:0.16 QI:89|0.85|0.87|1|0.85|0.87|8|0|339; (*GB) gi|325516268|gb|ADZ24712.1| (e_value=0.0) anthranilate phosphoribosyltransferase [Solanum pennellii];; (*SWP) sp|Q02166|TRPD_ARATH (e_value=2e-150) Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G17990.1 (e_value=2e-151) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444;; (*ITAG) Solyc06g071550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40439408-40443221 transcript_region:SL2.40ch06:40439408..40443221+ go_terms:GO:0004048,GO:0005515 functional_description:"Anthranilate phosphoribosyltransferase (AHRD V1 **** A8IBN0_CHLRE); contains Interpro domain(s) IPR005940 Anthranilate phosphoribosyl transferase "; GO:0004048,GO:0005515 NbS00014929g0007.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|93; (*ITAG) Solyc08g048080.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37782633-37782920 transcript_region:SL2.40ch08:37782633..37782920- functional_description:"Unknown Protein (AHRD V1)"; NbS00014929g0013.1 protein AED:0.06 eAED:0.06 QI:395|1|1|1|1|1|7|456|351; (*GB) gi|224121586|ref|XP_002330737.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7M1|B3GTE_ARATH (e_value=2e-179) Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1;; (*TAIR) AT1G53290.1 (e_value=2e-180) | Symbols: | Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345;; (*ITAG) Solyc07g062590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62505718-62512422 transcript_region:SL2.40ch07:62505718..62512422- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00014929g0016.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.55|1|0.5|0.33|9|0|1181; (*GB) gi|356546822|ref|XP_003541821.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100795889 [Glycine max];; (*SWP) sp|Q6PDQ2|CHD4_MOUSE (e_value=2e-11) Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1;; (*TAIR) AT3G14980.1 (e_value=2e-115) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr3:5039931-5044811 REVERSE LENGTH=1189;; (*ITAG) Solyc07g062600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62512447-62519706 transcript_region:SL2.40ch07:62512447..62519706- go_terms:GO:0023034,GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0023034,GO:0008270 NbS00009360g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|149; (*TAIR) AT4G19100.1 (e_value=5e-16) | Symbols: PAM68 | Protein of unknown function (DUF3464) | chr4:10453453-10454359 FORWARD LENGTH=214;; (*ITAG) Solyc12g096100.1.1 (e_value=5e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63499162-63499743 transcript_region:SL2.40ch12:63499162..63499743+ functional_description:"ABC-type Co2+ transport system permease component (AHRD V1 *--- B6TSG4_MAIZE)"; NbS00057688g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|3|0|610; (*GB) gi|255586271|ref|XP_002533788.1| (e_value=7e-162) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|B3H672|PP317_ARATH (e_value=1e-129) Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1;; (*TAIR) AT4G17616.1 (e_value=8e-131) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:9819608-9821632 FORWARD LENGTH=674;; (*ITAG) Solyc04g072150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56770029-56772164 transcript_region:SL2.40ch04:56770029..56772164+ functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002408g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|0|206; (*GB) gi|76573371|gb|ABA46790.1| (e_value=1e-144) 60S ribosomal protein L13a-like protein [Solanum tuberosum];; (*SWP) sp|Q9FKC0|R13A4_ARATH (e_value=4e-135) 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1;; (*TAIR) AT5G48760.2 (e_value=3e-136) | Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206;; (*ITAG) Solyc12g098330.1.1 (e_value=1e-147) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64219819-64222066 transcript_region:SL2.40ch12:64219819..64222066+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00002408g0007.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.66|0|0|3|0|212; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-64) hypothetical protein [Nicotiana tabacum]; NbS00057357g0003.1 protein AED:0.10 eAED:0.14 QI:0|0|0|1|0|0|3|0|250; (*GB) gi|224114621|ref|XP_002316812.1| (e_value=9e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT2G42760.1 (e_value=1e-16) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc07g055270.1.1 (e_value=6e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:60677501-60678196 transcript_region:SL2.40ch07:60677501..60678196- functional_description:"Unknown Protein (AHRD V1)"; NbS00056256g0003.1 protein AED:0.34 eAED:0.35 QI:0|1|0.5|1|1|1|4|0|215; (*GB) gi|225448679|ref|XP_002280180.1| (e_value=3e-95) PREDICTED: transcription factor RF2b [Vitis vinifera];; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=3e-64) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT1G06850.1 (e_value=4e-61) | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper 52 | chr1:2105233-2106518 FORWARD LENGTH=337;; (*ITAG) Solyc06g048630.2.1 (e_value=7e-127) genomic_reference:SL2.40ch06 gene_region:27901278-27907435 transcript_region:SL2.40ch06:27901278..27907435- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LF63_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00022810g0004.1 protein AED:0.25 eAED:0.36 QI:0|0|0.5|1|0|0.5|2|56|80 NbS00027031g0005.1 protein AED:0.33 eAED:0.38 QI:0|0|0|0.5|0|0.25|4|0|203; (*GB) gi|359497481|ref|XP_003635533.1| (e_value=1e-77) PREDICTED: LOB domain-containing protein 36-like, partial [Vitis vinifera];; (*SWP) sp|Q9FKZ3|LBD36_ARATH (e_value=9e-71) LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1;; (*TAIR) AT5G66870.1 (e_value=7e-72) | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 | chr5:26706621-26707562 FORWARD LENGTH=313;; (*ITAG) Solyc02g090410.2.1 (e_value=8e-83) genomic_reference:SL2.40ch02 gene_region:46548143-46550041 transcript_region:SL2.40ch02:46548143..46550041- functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00002222g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|224142933|ref|XP_002324785.1| (e_value=1e-57) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q84QC2|ERF17_ARATH (e_value=2e-44) Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1;; (*TAIR) AT1G19210.1 (e_value=2e-45) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:6626973-6627530 REVERSE LENGTH=185;; (*ITAG) Solyc06g054630.1.1 (e_value=1e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33847023-33847736 transcript_region:SL2.40ch06:33847023..33847736+ go_terms:GO:0005840,GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005840,GO:0003677,GO:0006355 NbS00019375g0003.1 protein AED:0.23 eAED:0.26 QI:114|0.77|0.7|1|0.77|0.8|10|234|360; (*GB) gi|255566855|ref|XP_002524411.1| (e_value=9e-167) methionine aminopeptidase, putative [Ricinus communis];; (*SWP) sp|Q9FV52|AMP1B_ARATH (e_value=3e-159) Methionine aminopeptidase 1B, chloroplastic OS=Arabidopsis thaliana GN=MAP1B PE=2 SV=2;; (*TAIR) AT1G13270.1 (e_value=2e-160) | Symbols: MAP1C, MAP1B | methionine aminopeptidase 1B | chr1:4544999-4547155 FORWARD LENGTH=369;; (*ITAG) Solyc05g009780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3973339-3980949 transcript_region:SL2.40ch05:3973339..3980949- go_terms:GO:0070006 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9SEJ2_RICCO); contains Interpro domain(s) IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 "; GO:0070006 NbS00017939g0003.1 protein AED:0.09 eAED:0.09 QI:319|0.5|0.6|1|0|0.4|5|0|302; (*GB) gi|4160298|emb|CAA09852.1| (e_value=6e-164) cyclin D2.1 protein [Nicotiana tabacum];; (*SWP) sp|Q6YXH8|CCD41_ORYSJ (e_value=2e-49) Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2;; (*TAIR) AT2G22490.1 (e_value=1e-46) | Symbols: CYCD2;1, ATCYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873 REVERSE LENGTH=361;; (*ITAG) Solyc05g051410.2.1 (e_value=2e-109) genomic_reference:SL2.40ch05 gene_region:60859090-60861492 transcript_region:SL2.40ch05:60859090..60861492+ go_terms:GO:0005515 functional_description:"Cyclin D2 (AHRD V1 ***- Q8L6U0_DAUCA); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515 NbS00028656g0005.1 protein AED:0.36 eAED:0.36 QI:133|0.8|0.62|1|0.86|0.75|16|0|481; (*GB) gi|334702289|gb|AEG89704.1| (e_value=0.0) polypyrimidine tract-binding protein 6 [Solanum tuberosum];; (*SWP) sp|Q6ICX4|PTBP3_ARATH (e_value=0.0) Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1;; (*TAIR) AT1G43190.2 (e_value=0.0) | Symbols: PTB3 | polypyrimidine tract-binding protein 3 | chr1:16275432-16278185 REVERSE LENGTH=432;; (*ITAG) Solyc10g080720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61253555-61258258 transcript_region:SL2.40ch10:61253555..61258258- go_terms:GO:0003676,GO:0000166 functional_description:"Polypyrimidine tract binding protein 1 (AHRD V1 **-- Q9BUQ0_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbC25663662g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|77; (*GB) gi|14031051|gb|AAK52085.1| (e_value=3e-28) peroxidase [Nicotiana tabacum];; (*SWP) sp|Q96512|PER9_ARATH (e_value=4e-26) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1;; (*TAIR) AT1G44970.1 (e_value=3e-27) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc04g080760.2.1 (e_value=6e-32) genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00027918g0003.1 protein AED:0.04 eAED:0.05 QI:0|0.85|0.75|1|1|1|8|364|710; (*GB) gi|224058512|ref|XP_002299533.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G11560.1 (e_value=0.0) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587;; (*ITAG) Solyc08g081050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00042015g0004.1 protein AED:0.13 eAED:0.13 QI:235|0.9|0.90|1|0.8|0.90|11|212|659; (*GB) gi|24785191|dbj|BAC23059.1| (e_value=3e-149) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9ZPY6|ARFK_ARATH (e_value=6e-54) Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3;; (*TAIR) AT2G46530.1 (e_value=3e-55) | Symbols: ARF11 | auxin response factor 11 | chr2:19104993-19108029 FORWARD LENGTH=601;; (*ITAG) Solyc05g056040.2.1 (e_value=2e-149) genomic_reference:SL2.40ch05 gene_region:64568906-64574482 transcript_region:SL2.40ch05:64568906..64574482- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 14 (AHRD V1 *-*- D9HNU1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005634,GO:0006355 NbS00005288g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.4|1|0.5|0.6|5|384|309; (*GB) gi|357509969|ref|XP_003625273.1| (e_value=3e-38) hypothetical protein MTR_7g093350 [Medicago truncatula];; (*TAIR) AT2G42040.1 (e_value=4e-19) | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17543282-17545063 FORWARD LENGTH=269;; (*ITAG) Solyc10g080530.1.1 (e_value=3e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61096979-61099234 transcript_region:SL2.40ch10:61096979..61099234- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR014977 WRC "; NbS00005288g0011.1 protein AED:0.10 eAED:0.11 QI:14|0|0|1|0|0|4|0|522; (*GB) gi|359493418|ref|XP_002280278.2| (e_value=7e-177) PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Vitis vinifera];; (*SWP) sp|Q9FG33|LRKS5_ARATH (e_value=2e-150) Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana GN=LECRKS5 PE=2 SV=1;; (*TAIR) AT5G06740.1 (e_value=2e-151) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=652;; (*ITAG) Solyc10g080510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61084309-61086321 transcript_region:SL2.40ch10:61084309..61086321- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00005288g0012.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|3|0|122; (*GB) gi|224055691|ref|XP_002298605.1| (e_value=5e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8MR62|VIAF1_DROME (e_value=3e-26) Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1;; (*TAIR) AT5G14240.1 (e_value=4e-44) | Symbols: | Thioredoxin superfamily protein | chr5:4596223-4597568 REVERSE LENGTH=256;; (*ITAG) Solyc10g078830.1.1 (e_value=3e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59847571-59851518 transcript_region:SL2.40ch10:59847571..59851518+ functional_description:"Phosducin-like protein 3 (AHRD V1 ***- B4FF90_MAIZE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00025436g0012.1 protein AED:0.11 eAED:0.17 QI:0|0.33|0|1|0.33|0.25|4|0|157; (*GB) gi|297734737|emb|CBI16971.3| (e_value=5e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV87|BRN2_ARATH (e_value=1e-97) Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1;; (*TAIR) AT4G10350.1 (e_value=8e-99) | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing protein 70 | chr4:6415287-6416829 REVERSE LENGTH=341;; (*ITAG) Solyc06g063430.1.1 (e_value=1e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36497407-36500202 transcript_region:SL2.40ch06:36497407..36500202- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1Q0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00025436g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.28|0.37|0.87|1|1|8|191|343; (*GB) gi|224125950|ref|XP_002319716.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21720.1 (e_value=1e-81) | Symbols: | Plant protein of unknown function (DUF639) | chr2:9273696-9276802 FORWARD LENGTH=734;; (*ITAG) Solyc04g007290.2.1 (e_value=2e-103) genomic_reference:SL2.40ch04 gene_region:1002835-1007848 transcript_region:SL2.40ch04:1002835..1007848- functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00048173g0003.1 protein AED:0.08 eAED:0.08 QI:155|0.75|0.8|1|0.25|0.2|5|331|264; (*GB) gi|224090051|ref|XP_002308922.1| (e_value=3e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=2e-142) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=1e-143) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=5e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00012515g0018.1 protein AED:0.31 eAED:0.31 QI:345|0.83|0.85|1|0.83|0.57|7|317|312; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=3e-73) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=8e-56) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=6e-57) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc02g064630.2.1 (e_value=3e-93) genomic_reference:SL2.40ch02 gene_region:30298568-30306185 transcript_region:SL2.40ch02:30298568..30306185+ go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone-like protein (Fragment) (AHRD V1 *--- Q93VE8_FRILI); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00012515g0006.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|0.33|3|0|124; (*ITAG) Solyc02g092290.2.1 (e_value=5e-26) genomic_reference:SL2.40ch02 gene_region:47989385-47994458 transcript_region:SL2.40ch02:47989385..47994458+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein At5g02910 (AHRD V1 ***- FBL79_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00012515g0017.1 protein AED:0.46 eAED:0.83 QI:0|0|0|1|0|0.5|2|0|124 NbS00012515g0023.1 protein AED:0.28 eAED:0.28 QI:49|0.28|0.25|0.75|0.71|0.75|8|0|631; (*GB) gi|255568609|ref|XP_002525278.1| (e_value=0.0) GTP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FJW6|PP451_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=2 SV=2;; (*TAIR) AT5G67570.1 (e_value=0.0) | Symbols: EMB246, DG1, EMB1408 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26952352-26955480 FORWARD LENGTH=798;; (*ITAG) Solyc02g092310.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47997870-48001877 transcript_region:SL2.40ch02:47997870..48001877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L2Y3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012515g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|224129696|ref|XP_002328780.1| (e_value=3e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|P41189|RL7_LIBAF (e_value=6e-18) 50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1;; (*TAIR) AT4G37660.1 (e_value=2e-45) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr4:17695543-17696046 FORWARD LENGTH=167;; (*ITAG) Solyc02g092300.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47996516-47997016 transcript_region:SL2.40ch02:47996516..47997016- go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00012515g0020.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|204; (*ITAG) Solyc02g092290.2.1 (e_value=2e-42) genomic_reference:SL2.40ch02 gene_region:47989385-47994458 transcript_region:SL2.40ch02:47989385..47994458+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein At5g02910 (AHRD V1 ***- FBL79_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00020993g0005.1 protein AED:0.09 eAED:0.09 QI:143|1|1|1|1|1|15|539|527; (*GB) gi|255551749|ref|XP_002516920.1| (e_value=0.0) protein arginine n-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q7XI75|CARM1_ORYSJ (e_value=0.0) Probable histone-arginine methyltransferase CARM1 OS=Oryza sativa subsp. japonica GN=CARM1 PE=2 SV=1;; (*TAIR) AT3G06930.2 (e_value=0.0) | Symbols: ATPRMT4B, PRMT4B | protein arginine methyltransferase 4B | chr3:2185469-2189296 REVERSE LENGTH=535;; (*ITAG) Solyc12g099560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65004438-65013415 transcript_region:SL2.40ch12:65004438..65013415- functional_description:"Arginine N-methyltransferase family protein (AHRD V1 ***- D7L611_ARALY)"; NbS00052607g0002.1 protein AED:0.08 eAED:0.08 QI:294|1|1|1|0|0.5|2|428|233; (*GB) gi|255583924|ref|XP_002532710.1| (e_value=7e-131) n6-DNA-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9Y5N5|HEMK2_HUMAN (e_value=2e-47) HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=3;; (*TAIR) AT3G13440.1 (e_value=1e-117) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:4378338-4379347 FORWARD LENGTH=278;; (*ITAG) Solyc12g100070.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65290244-65290834 transcript_region:SL2.40ch12:65290244..65290834- go_terms:GO:0032259,GO:0008168 functional_description:"Methyltransferase (AHRD V1 ***- A6ZYA0_YEAS7); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0032259,GO:0008168 NbS00058008g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|175; (*GB) gi|225438968|ref|XP_002284296.1| (e_value=1e-56) PREDICTED: LOB domain-containing protein 38 [Vitis vinifera];; (*SWP) sp|Q9SN23|LBD38_ARATH (e_value=5e-51) LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1;; (*TAIR) AT3G49940.1 (e_value=4e-52) | Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247;; (*ITAG) Solyc02g092550.2.1 (e_value=4e-72) genomic_reference:SL2.40ch02 gene_region:48182706-48183792 transcript_region:SL2.40ch02:48182706..48183792+ functional_description:"LOB domain protein 38 (AHRD V1 ***- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00060320g0001.1 protein AED:0.23 eAED:0.23 QI:705|0.87|0.88|1|0.75|0.66|9|0|323; (*GB) gi|225443375|ref|XP_002267010.1| (e_value=2e-126) PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q5XET6|PUS3_ARATH (e_value=6e-117) RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1;; (*TAIR) AT1G78910.1 (e_value=5e-118) | Symbols: | Pseudouridine synthase family protein | chr1:29665269-29667557 FORWARD LENGTH=478;; (*ITAG) Solyc07g042750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53587283-53591073 transcript_region:SL2.40ch07:53587283..53591073+ go_terms:GO:0009982 functional_description:"Pseudouridine synthase family protein (AHRD V1 **** D7L9Z2_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009982 NbS00003286g0009.1 protein AED:0.12 eAED:0.12 QI:585|1|0.9|1|1|1|10|0|999; (*GB) gi|225437714|ref|XP_002273228.1| (e_value=0.0) PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=0.0) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=0.0) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc01g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00003286g0012.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0.25|0.4|5|0|209; (*GB) gi|359472960|ref|XP_003631221.1| (e_value=6e-91) PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase isoform 2 [Vitis vinifera];; (*SWP) sp|Q84KP0|DFRA_PYRCO (e_value=2e-27) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1;; (*TAIR) AT1G68540.2 (e_value=4e-81) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:25720066-25721282 FORWARD LENGTH=294;; (*ITAG) Solyc01g068080.2.1 (e_value=2e-87) genomic_reference:SL2.40ch01 gene_region:69511671-69514962 transcript_region:SL2.40ch01:69511671..69514962- go_terms:GO:0044237,GO:0008152 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7MD06_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00003286g0013.1 protein AED:0.20 eAED:0.28 QI:0|0|0|0.57|0.66|0.57|7|0|349; (*GB) gi|224088994|ref|XP_002335068.1| (e_value=9e-118) predicted protein [Populus trichocarpa];; (*TAIR) AT2G47010.2 (e_value=2e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc01g068130.2.1 (e_value=1e-122) genomic_reference:SL2.40ch01 gene_region:69627835-69631398 transcript_region:SL2.40ch01:69627835..69631398- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00011231g0005.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0.4|1|0.5|0.6|5|0|293; (*GB) gi|255544630|ref|XP_002513376.1| (e_value=3e-94) Peroxidase 57 precursor, putative [Ricinus communis];; (*SWP) sp|O81755|PER48_ARATH (e_value=2e-60) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=4e-53) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc02g085930.2.1 (e_value=9e-143) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00057662g0004.1 protein AED:0.24 eAED:0.24 QI:342|0.71|0.62|1|0.71|0.62|8|309|305; (*GB) gi|350534656|ref|NP_001234152.1| (e_value=0.0) cytosolic malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|Q08062|MDHC_MAIZE (e_value=0.0) Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2;; (*TAIR) AT5G43330.1 (e_value=7e-177) | Symbols: | Lactate/malate dehydrogenase family protein | chr5:17390552-17392449 FORWARD LENGTH=332;; (*ITAG) Solyc01g090710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76110717-76113403 transcript_region:SL2.40ch01:76110717..76113403+ go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase, cytoplasmic (AHRD V1 **** MDHC_ORYSJ); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00060254g0001.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|1|1|2|0|359; (*GB) gi|1786140|dbj|BAA19113.1| (e_value=5e-75) tapetum-specific zinc finger protein 1 [Petunia x hybrida];; (*TAIR) AT5G56200.1 (e_value=1e-14) | Symbols: | C2H2 type zinc finger transcription factor family | chr5:22747768-22749249 FORWARD LENGTH=493;; (*ITAG) Solyc07g066160.1.1 (e_value=5e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64873053-64874048 transcript_region:SL2.40ch07:64873053..64874048- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MD22_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00023863g0001.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|2|0|197; (*GB) gi|225444639|ref|XP_002276089.1| (e_value=6e-74) PREDICTED: 21 kDa protein-like [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-45) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G20740.1 (e_value=8e-60) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:7025867-7026484 REVERSE LENGTH=205;; (*ITAG) Solyc07g042390.1.1 (e_value=6e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:52852235-52852798 transcript_region:SL2.40ch07:52852235..52852798- go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00023863g0103.1 protein AED:0.22 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|179 NbS00013787g0006.1 protein AED:0.01 eAED:0.03 QI:0|1|0|1|0|1|2|0|188; (*GB) gi|225453046|ref|XP_002267312.1| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera];; (*TAIR) AT2G31160.1 (e_value=4e-72) | Symbols: LSH3 | Protein of unknown function (DUF640) | chr2:13277903-13278562 FORWARD LENGTH=219;; (*ITAG) Solyc06g083860.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:45448018-45450744 transcript_region:SL2.40ch06:45448018..45450744- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 *-*- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00043986g0003.1 protein AED:0.04 eAED:0.04 QI:166|1|1|1|1|1|6|18|451; (*GB) gi|224069890|ref|XP_002303073.1| (e_value=4e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRT2|BH062_ARATH (e_value=4e-35) Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=8e-37) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc06g083170.2.1 (e_value=4e-133) genomic_reference:SL2.40ch06 gene_region:44995035-44997756 transcript_region:SL2.40ch06:44995035..44997756+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00020531g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|729; (*GB) gi|326367387|gb|ADZ55305.1| (e_value=0.0) serine protease [Coffea arabica];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc02g072280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36145951-36148143 transcript_region:SL2.40ch02:36145951..36148143- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00020531g0029.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|0.66|1|1|3|0|245; (*GB) gi|156720465|dbj|BAF76883.1| (e_value=5e-99) H2B histone-fold-like protein [Nicotiana tabacum];; (*ITAG) Solyc02g072260.2.1 (e_value=2e-94) genomic_reference:SL2.40ch02 gene_region:36137372-36139809 transcript_region:SL2.40ch02:36137372..36139809+ go_terms:GO:0006353 functional_description:"H2B histone-fold-like protein (Fragment) (AHRD V1 ***- A7VMP7_TOBAC); contains Interpro domain(s) IPR011112 Rho termination factor, N-terminal "; GO:0006353 NbS00020531g0009.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|338; (*GB) gi|307136193|gb|ADN34032.1| (e_value=1e-131) leucine-rich repeat family protein [Cucumis melo subsp. melo];; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=4e-19) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT4G18760.1 (e_value=4e-92) | Symbols: AtRLP51, RLP51 | receptor like protein 51 | chr4:10308163-10309458 REVERSE LENGTH=431;; (*ITAG) Solyc02g072250.1.1 (e_value=6e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36134785-36135969 transcript_region:SL2.40ch02:36134785..36135969+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00020531g0032.1 protein AED:0.12 eAED:0.12 QI:0|0.90|0.83|0.91|1|1|12|0|382; (*GB) gi|359483773|ref|XP_003633016.1| (e_value=0.0) PREDICTED: shaggy-related protein kinase eta-like [Vitis vinifera];; (*SWP) sp|Q39011|KSG7_ARATH (e_value=0.0) Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2;; (*TAIR) AT4G18710.1 (e_value=0.0) | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein kinase superfamily protein | chr4:10296474-10298913 FORWARD LENGTH=380;; (*ITAG) Solyc02g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36164733-36171575 transcript_region:SL2.40ch02:36164733..36171575+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00020531g0037.1 protein AED:0.13 eAED:0.15 QI:108|0.66|0.5|1|0.73|0.75|16|0|963; (*GB) gi|359483534|ref|XP_002269610.2| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Vitis vinifera];; (*SWP) sp|Q8LPK5|CESA8_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1;; (*TAIR) AT4G18780.1 (e_value=0.0) | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose synthase family protein | chr4:10312846-10316719 REVERSE LENGTH=985;; (*ITAG) Solyc02g072240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36127210-36131873 transcript_region:SL2.40ch02:36127210..36131873+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6J8W9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00020531g0031.1 protein AED:0.18 eAED:0.18 QI:0|0.81|0.83|1|0.63|0.75|12|572|412; (*GB) gi|255562464|ref|XP_002522238.1| (e_value=6e-145) wd40 protein, putative [Ricinus communis];; (*SWP) sp|Q54BI5|WDR53_DICDI (e_value=1e-24) WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum GN=wdr53 PE=3 SV=1;; (*TAIR) AT5G45760.1 (e_value=4e-147) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:18561121-18563005 FORWARD LENGTH=360;; (*ITAG) Solyc02g072230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36118068-36126069 transcript_region:SL2.40ch02:36118068..36126069+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2IZJ6_NOSP7); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00020531g0035.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.25|1|0.66|0.75|4|0|676; (*GB) gi|147776333|emb|CAN72034.1| (e_value=2e-158) hypothetical protein VITISV_000078 [Vitis vinifera];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-87) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=1e-88) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g072400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00020531g0013.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|255645392|gb|ACU23192.1| (e_value=4e-38) unknown [Glycine max];; (*TAIR) AT2G42760.1 (e_value=2e-19) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc02g072210.1.1 (e_value=1e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:36103196-36103873 transcript_region:SL2.40ch02:36103196..36103873+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020531g0012.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|302143457|emb|CBI22018.3| (e_value=3e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42760.1 (e_value=4e-17) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). | chr2:17796382-17797185 REVERSE LENGTH=267;; (*ITAG) Solyc02g072220.1.1 (e_value=1e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:36107992-36108651 transcript_region:SL2.40ch02:36107992..36108651+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020531g0033.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|174; (*GB) gi|225735204|gb|ACO25579.1| (e_value=2e-75) protein kinase-coding resistance protein [Nicotiana repanda];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-33) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47090.1 (e_value=9e-35) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17341512-17344645 REVERSE LENGTH=1009;; (*ITAG) Solyc02g072400.1.1 (e_value=1e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00020531g0034.1 protein AED:0.47 eAED:0.56 QI:0|0|0|1|0|0.5|2|0|80; (*ITAG) Solyc02g072400.1.1 (e_value=1e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00051184g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|242; (*GB) gi|40644130|emb|CAC83765.1| (e_value=5e-154) allene oxide cyclase [Nicotiana tabacum];; (*SWP) sp|Q9LS01|AOC3_ARATH (e_value=8e-87) Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1;; (*TAIR) AT3G25780.1 (e_value=6e-88) | Symbols: AOC3 | allene oxide cyclase 3 | chr3:9409362-9410409 FORWARD LENGTH=258;; (*ITAG) Solyc02g085730.2.1 (e_value=7e-134) genomic_reference:SL2.40ch02 gene_region:43109536-43111867 transcript_region:SL2.40ch02:43109536..43111867+ go_terms:GO:0046423 functional_description:"Allene oxide cyclase (AHRD V1 **** Q9LEG5_SOLLC); contains Interpro domain(s) IPR009410 Allene oxide cyclase "; GO:0046423 NbS00039819g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|5|0|339; (*GB) gi|359491256|ref|XP_003634250.1| (e_value=1e-51) PREDICTED: receptor-like protein kinase HSL1 [Vitis vinifera];; (*SWP) sp|Q9FHK7|Y5516_ARATH (e_value=2e-23) Probable leucine-rich repeat receptor-like protein kinase At5g05160 OS=Arabidopsis thaliana GN=At5g05160 PE=1 SV=1;; (*TAIR) AT5G05160.1 (e_value=2e-24) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:1528000-1530017 FORWARD LENGTH=640;; (*ITAG) Solyc03g114080.1.1 (e_value=3e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58180200-58182571 transcript_region:SL2.40ch03:58180200..58182571+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00014628g0006.1 protein AED:0.00 eAED:0.00 QI:65|1|1|1|1|1|3|251|130; (*GB) gi|225451743|ref|XP_002280026.1| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100244709 isoform 1 [Vitis vinifera];; (*TAIR) AT3G02120.1 (e_value=5e-13) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr3:377122-377577 FORWARD LENGTH=126;; (*ITAG) Solyc02g088830.2.1 (e_value=1e-37) genomic_reference:SL2.40ch02 gene_region:45367997-45368704 transcript_region:SL2.40ch02:45367997..45368704+ functional_description:"F1C9.9 protein (AHRD V1 *-*- Q9SGB0_ARATH)"; NbS00014628g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.25|0.2|0.8|0|0.4|5|634|380; (*GB) gi|147803535|emb|CAN77667.1| (e_value=5e-24) hypothetical protein VITISV_038105 [Vitis vinifera];; (*TAIR) AT2G03630.1 (e_value=5e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:1103205-1103963 FORWARD LENGTH=252;; (*ITAG) Solyc02g088840.2.1 (e_value=2e-100) genomic_reference:SL2.40ch02 gene_region:45371895-45373561 transcript_region:SL2.40ch02:45371895..45373561+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027567g0001.1 protein AED:0.14 eAED:0.18 QI:0|1|0|1|1|1|2|0|143 NbS00045720g0001.1 protein AED:0.12 eAED:0.13 QI:366|0.8|0.66|1|0.8|0.66|6|560|299; (*GB) gi|224099853|ref|XP_002311645.1| (e_value=2e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=5e-38) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT5G43830.1 (e_value=9e-130) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr5:17622593-17624239 REVERSE LENGTH=251;; (*ITAG) Solyc09g082780.2.1 (e_value=2e-161) genomic_reference:SL2.40ch09 gene_region:63852368-63856111 transcript_region:SL2.40ch09:63852368..63856111+ functional_description:"Asparagine synthetase B (AHRD V1 *-*- A1JQ99_YERE8)"; NbS00045720g0006.1 protein AED:0.26 eAED:0.27 QI:78|1|0.85|1|0.92|0.92|14|0|332; (*GB) gi|224107947|ref|XP_002314664.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96449|DMC1_SOYBN (e_value=0.0) Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G22880.1 (e_value=0.0) | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51) family protein | chr3:8097948-8100740 REVERSE LENGTH=344;; (*ITAG) Solyc09g082790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63856759-63860520 transcript_region:SL2.40ch09:63856759..63860520- go_terms:GO:0005515,GO:0005634,GO:0006259,GO:0017111 functional_description:"DNA repair and recombination protein RAD51 (AHRD V1 **-- A9CT16_ENTBH); contains Interpro domain(s) IPR011940 Meiotic recombinase Dmc1 "; GO:0005515,GO:0005634,GO:0006259,GO:0017111 NbS00045147g0003.1 protein AED:0.38 eAED:0.38 QI:183|1|1|1|1|1|5|311|116; (*GB) gi|13548685|dbj|BAB40808.1| (e_value=2e-76) homolog of defender against apoptotic death 1 homolog [Nicotiana suaveolens x Nicotiana tabacum];; (*SWP) sp|Q9SMC4|DAD1_SOLLC (e_value=6e-73) Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1;; (*TAIR) AT2G35520.1 (e_value=5e-66) | Symbols: DAD2 | Defender against death (DAD family) protein | chr2:14921587-14922657 FORWARD LENGTH=115;; (*ITAG) Solyc08g076460.2.1 (e_value=4e-74) genomic_reference:SL2.40ch08 gene_region:57631953-57635858 transcript_region:SL2.40ch08:57631953..57635858+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like protein (AHRD V1 **-* A2I438_MACHI); contains Interpro domain(s) IPR003038 Defender against death DAD protein "; GO:0042802,GO:0004579 NbS00036476g0010.1 protein AED:0.27 eAED:0.27 QI:207|0.8|0.93|1|0.93|0.93|16|421|516; (*GB) gi|356546253|ref|XP_003541544.1| (e_value=0.0) PREDICTED: splicing factor 3B subunit 2-like [Glycine max];; (*SWP) sp|Q13435|SF3B2_HUMAN (e_value=1e-94) Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2;; (*TAIR) AT4G21660.1 (e_value=0.0) | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584;; (*ITAG) Solyc02g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37836635-37847031 transcript_region:SL2.40ch02:37836635..37847031+ go_terms:GO:0005515 functional_description:"Splicing factor 3b subunit 2 (AHRD V1 **-- Q80W39_MOUSE); contains Interpro domain(s) IPR007180 Protein of unknown function DUF382 "; GO:0005515 NbS00036476g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|0.66|0.5|4|0|249; (*GB) gi|297736528|emb|CBI25399.3| (e_value=3e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42920.1 (e_value=1e-12) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:17858705-17860384 FORWARD LENGTH=559;; (*ITAG) Solyc07g062820.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62696420-62698273 transcript_region:SL2.40ch07:62696420..62698273+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein PPR1106-17 (AHRD V1 ***- B6SWY6_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00047378g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.9|0.90|1|0.9|0.90|11|3|723; (*GB) gi|255561268|ref|XP_002521645.1| (e_value=0.0) arsenite-resistance protein, putative [Ricinus communis];; (*SWP) sp|Q9ZVD0|SRRT_ARATH (e_value=0.0) Serrate RNA effector molecule OS=Arabidopsis thaliana GN=SE PE=1 SV=2;; (*TAIR) AT2G27100.1 (e_value=0.0) | Symbols: SE | C2H2 zinc-finger protein SERRATE (SE) | chr2:11572587-11576357 FORWARD LENGTH=720;; (*ITAG) Solyc01g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3095457-3108637 transcript_region:SL2.40ch01:3095457..3108637- go_terms:GO:0005515,GO:0003700 functional_description:"Serrate RNA effector molecule homolog (AHRD V1 *-*- SRRT_DROWI)"; GO:0005515,GO:0003700 NbS00047378g0008.1 protein AED:0.23 eAED:0.23 QI:130|1|0.8|1|1|1|5|164|209; (*GB) gi|255571479|ref|XP_002526687.1| (e_value=2e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G21530.1 (e_value=2e-45) | Symbols: | SMAD/FHA domain-containing protein | chr2:9219372-9220464 FORWARD LENGTH=209;; (*ITAG) Solyc01g009080.2.1 (e_value=6e-111) genomic_reference:SL2.40ch01 gene_region:3091052-3093978 transcript_region:SL2.40ch01:3091052..3093978+ functional_description:"FHA domain containing protein (AHRD V1 ***- B6TP39_MAIZE); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00005332g0008.1 protein AED:0.35 eAED:0.38 QI:198|1|0.87|1|0.85|0.75|8|0|301; (*GB) gi|77999259|gb|ABB16976.1| (e_value=0.0) GTP-binding-like protein [Solanum tuberosum];; (*SWP) sp|Q41009|TOC34_PEA (e_value=6e-151) Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1;; (*TAIR) AT5G05000.1 (e_value=7e-151) | Symbols: TOC34, ATTOC34, OEP34 | translocon at the outer envelope membrane of chloroplasts 34 | chr5:1474262-1475772 REVERSE LENGTH=313;; (*ITAG) Solyc05g052160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61599303-61602074 transcript_region:SL2.40ch05:61599303..61602074- go_terms:GO:0005525,GO:0003924 functional_description:"Translocase of chloroplast 34 (AHRD V1 **-- B6TBT7_MAIZE); contains Interpro domain(s) IPR005688 Chloroplast protein import component Toc34 "; GO:0005525,GO:0003924 NbS00005332g0011.1 protein AED:0.36 eAED:0.42 QI:0|0.5|0|1|0|0|3|0|143; (*GB) gi|297744965|emb|CBI38557.3| (e_value=4e-44) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=7e-28) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT5G27570.1 (e_value=2e-28) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:9734896-9736131 REVERSE LENGTH=411;; (*ITAG) Solyc03g095210.1.1 (e_value=6e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49620743-49622751 transcript_region:SL2.40ch03:49620743..49622751- go_terms:GO:0004872 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00005332g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.66|0.5|0.66|3|0|702; (*GB) gi|225433712|ref|XP_002266503.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O81908|PPR2_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2;; (*TAIR) AT1G02060.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:360918-363050 REVERSE LENGTH=710;; (*ITAG) Solyc03g095200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49617776-49619908 transcript_region:SL2.40ch03:49617776..49619908+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP47_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00035237g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.33|3|0|492; (*GB) gi|147856334|emb|CAN81778.1| (e_value=1e-88) hypothetical protein VITISV_034283 [Vitis vinifera];; (*TAIR) AT1G29760.1 (e_value=2e-64) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr1:10422381-10424116 FORWARD LENGTH=526;; (*ITAG) Solyc07g062230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62243794-62246227 transcript_region:SL2.40ch07:62243794..62246227+ functional_description:"Seipin (AHRD V1 *-*- Q5BIQ8_BOVIN); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00036807g0001.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|63 NbS00049395g0007.1 protein AED:0.11 eAED:0.11 QI:32|1|1|1|0.37|0.55|9|659|150; (*GB) gi|359484823|ref|XP_002272377.2| (e_value=8e-48) PREDICTED: HD domain-containing protein 2 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|P87242|YC0H_SCHPO (e_value=8e-28) HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4G3.17 PE=2 SV=1;; (*TAIR) AT1G26160.1 (e_value=3e-47) | Symbols: | Metal-dependent phosphohydrolase | chr1:9044784-9046945 REVERSE LENGTH=258;; (*ITAG) Solyc07g006200.2.1 (e_value=8e-62) genomic_reference:SL2.40ch07 gene_region:1027967-1032985 transcript_region:SL2.40ch07:1027967..1032985- go_terms:GO:0005515 functional_description:"HD domain containing protein (AHRD V1 ***- B6TWI3_MAIZE); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0005515 NbS00049395g0002.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.33|1|1|3|0|196; (*GB) gi|255559120|ref|XP_002520582.1| (e_value=4e-46) cytosolic purine 5-nucleotidase, putative [Ricinus communis];; (*SWP) sp|Q75K12|NT5D_DICDI (e_value=5e-15) 5'-nucleotidase domain-containing protein DDB_G0275467 OS=Dictyostelium discoideum GN=DDB_G0275467 PE=3 SV=1;; (*TAIR) AT2G23890.1 (e_value=1e-45) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553;; (*ITAG) Solyc07g006190.2.1 (e_value=3e-66) genomic_reference:SL2.40ch07 gene_region:1015061-1025947 transcript_region:SL2.40ch07:1015061..1025947- go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-nucleotidase (AHRD V1 **** D3B8C8_POLPA); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00028329g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|0.5|1|1|2|465|172; (*ITAG) Solyc04g025130.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18068631-18069119 transcript_region:SL2.40ch04:18068631..18069119+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028329g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.87|0.77|0.88|1|0.77|9|0|360; (*GB) gi|225425362|ref|XP_002269102.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255874 [Vitis vinifera];; (*TAIR) AT5G47860.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1350) | chr5:19381656-19384310 FORWARD LENGTH=431;; (*ITAG) Solyc01g008070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2211926-2218945 transcript_region:SL2.40ch01:2211926..2218945+ functional_description:"Alpha/beta superfamily hydrolase (AHRD V1 *--- D0CIF5_9SYNE); contains Interpro domain(s) IPR010765 Protein of unknown function DUF1350 "; NbS00022590g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|91 NbS00022590g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|332322086|emb|CCA65978.1| (e_value=2e-25) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00060796g0001.1 protein AED:0.09 eAED:0.09 QI:213|0|0.5|1|0|0.5|2|0|188; (*GB) gi|255560892|ref|XP_002521459.1| (e_value=4e-77) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q8L8Q3|LBD25_ARATH (e_value=4e-67) LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3;; (*TAIR) AT3G27650.1 (e_value=3e-68) | Symbols: LBD25 | LOB domain-containing protein 25 | chr3:10238731-10240346 FORWARD LENGTH=159;; (*ITAG) Solyc02g067800.2.1 (e_value=4e-75) genomic_reference:SL2.40ch02 gene_region:32489780-32491755 transcript_region:SL2.40ch02:32489780..32491755+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 1 (AHRD V1 ***- B2KKZ3_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00037496g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.33|1|0.2|0.33|6|241|828; (*GB) gi|356529414|ref|XP_003533287.1| (e_value=2e-107) PREDICTED: uncharacterized protein LOC100798960 [Glycine max];; (*ITAG) Solyc03g098630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00037496g0012.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|198; (*ITAG) Solyc03g098630.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00037496g0007.1 protein AED:0.28 eAED:0.28 QI:48|0.44|0.4|0.9|0.44|0.6|10|292|413; (*GB) gi|225454536|ref|XP_002281960.1| (e_value=5e-102) PREDICTED: DNA-binding protein RHL1 isoform 1 [Vitis vinifera];; (*SWP) sp|O81242|RHL1_ARATH (e_value=2e-76) DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1;; (*TAIR) AT1G48380.2 (e_value=8e-79) | Symbols: RHL1, HYP7 | root hair initiation protein root hairless 1 (RHL1) | chr1:17877637-17879203 REVERSE LENGTH=386;; (*ITAG) Solyc03g098620.2.1 (e_value=4e-145) genomic_reference:SL2.40ch03 gene_region:54371525-54378181 transcript_region:SL2.40ch03:54371525..54378181+ go_terms:GO:0005515,GO:0003677 functional_description:"DNA-binding protein RHL1 (AHRD V1 **-* RHL1_ARATH)"; GO:0005515,GO:0003677 NbS00039258g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.6|1|0.75|0.8|5|0|289; (*GB) gi|350538717|ref|NP_001234612.1| (e_value=0.0) cinnamoyl-CoA reductase [Solanum lycopersicum];; (*SWP) sp|P51104|DFRA_DIACA (e_value=5e-62) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1;; (*TAIR) AT1G15950.1 (e_value=1e-150) | Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reductase 1 | chr1:5478855-5481915 FORWARD LENGTH=344;; (*ITAG) Solyc06g068440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38793903-38796517 transcript_region:SL2.40ch06:38793903..38796517+ go_terms:GO:0016621 functional_description:"Cinnamoyl-CoA reductase (AHRD V1 **** Q4U1I5_SOLLC); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621 NbS00057578g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0|0.33|3|0|167; (*GB) gi|94692107|gb|ABF46823.1| (e_value=2e-99) putative tubulin alpha-1 chain [Fagus sylvatica];; (*SWP) sp|Q96460|TBA2_HORVU (e_value=2e-98) Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1;; (*TAIR) AT4G14960.1 (e_value=1e-99) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc08g006890.2.1 (e_value=3e-101) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00005652g0003.1 protein AED:0.76 eAED:0.88 QI:96|0|0|0.28|0.66|0.71|7|0|214 NbS00014721g0001.1 protein AED:0.38 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|416; (*GB) gi|225426466|ref|XP_002270815.1| (e_value=5e-130) PREDICTED: wall-associated receptor kinase-like 10-like [Vitis vinifera];; (*SWP) sp|B3LFC0|Y1332_ARATH (e_value=1e-100) Probable receptor-like protein kinase At1g33260 OS=Arabidopsis thaliana GN=At1g33260 PE=2 SV=1;; (*TAIR) AT1G33260.2 (e_value=1e-102) | Symbols: | Protein kinase superfamily protein | chr1:12064796-12066114 FORWARD LENGTH=348;; (*ITAG) Solyc07g062170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62198918-62200276 transcript_region:SL2.40ch07:62198918..62200276- go_terms:GO:0006468,GO:0016021 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016021 NbS00017632g0005.1 protein AED:0.40 eAED:0.44 QI:0|0|0.5|1|0|0|2|248|84 NbS00017632g0003.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|225447245|ref|XP_002272845.1| (e_value=6e-33) PREDICTED: uncharacterized protein LOC100261846 [Vitis vinifera];; (*TAIR) AT1G52855.1 (e_value=5e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19683137-19683343 REVERSE LENGTH=68;; (*ITAG) Solyc07g054470.1.1 (e_value=1e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60113746-60113952 transcript_region:SL2.40ch07:60113746..60113952- functional_description:"Unknown Protein (AHRD V1)"; NbS00010495g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.86|0.93|0.93|0.73|0.81|16|352|560; (*GB) gi|302141720|emb|CBI18923.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=0.0) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.5 (e_value=0.0) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494;; (*ITAG) Solyc01g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00010495g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|1|1|5|87|422; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5PNS9|P2C64_ARATH (e_value=0.0) Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00055677g0008.1 protein AED:0.17 eAED:0.17 QI:66|0.8|0.5|1|0.8|0.33|6|0|930; (*GB) gi|225458279|ref|XP_002281409.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Vitis vinifera];; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc12g089160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62709473-62712424 transcript_region:SL2.40ch12:62709473..62712424- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00055677g0002.1 protein AED:0.12 eAED:0.12 QI:34|0|0.5|1|0|0.5|2|246|218; (*GB) gi|224070174|ref|XP_002303129.1| (e_value=1e-109) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42760.1 (e_value=8e-97) | Symbols: | Leucine carboxyl methyltransferase | chr5:17148953-17150105 FORWARD LENGTH=348; NbS00060881g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|270|152; (*GB) gi|109289919|gb|AAP45172.2| (e_value=1e-65) hypothetical protein SBB1_14t00021 [Solanum bulbocastanum];; (*ITAG) Solyc12g096070.1.1 (e_value=1e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63486942-63490380 transcript_region:SL2.40ch12:63486942..63490380+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 5 (AHRD V1 **-- Q6AWY4_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00040332g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.75|1|0.66|0.75|4|29|340; (*GB) gi|7705206|gb|AAB32591.2| (e_value=0.0) MybSt1 [Solanum tuberosum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-32) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G47390.1 (e_value=8e-132) | Symbols: | myb-like transcription factor family protein | chr5:19227001-19228546 FORWARD LENGTH=365;; (*ITAG) Solyc08g078340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59322077-59325106 transcript_region:SL2.40ch08:59322077..59325106+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q2A9C4_BRAOL); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00035541g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|8886726|gb|AAF80560.1|AF192486_1 (e_value=0.0) omega-6 fatty acid desaturase [Sesamum indicum];; (*SWP) sp|P48631|FD6E2_SOYBN (e_value=2e-179) Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1;; (*TAIR) AT3G12120.2 (e_value=1e-178) | Symbols: FAD2 | fatty acid desaturase 2 | chr3:3860592-3861743 REVERSE LENGTH=383;; (*ITAG) Solyc01g006430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1033539-1035178 transcript_region:SL2.40ch01:1033539..1035178- go_terms:GO:0042389 functional_description:"Omega-6 fatty acid desaturase (AHRD V1 **** Q461Q1_HEVBR); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00035541g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|15231362|ref|NP_190203.1| (e_value=3e-25) Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT3G46170.1 (e_value=7e-28) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:16952723-16953589 REVERSE LENGTH=288;; (*ITAG) Solyc12g100220.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65362962-65363931 transcript_region:SL2.40ch12:65362962..65363931+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **-- B1M654_METRJ); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00027256g0003.1 protein AED:0.17 eAED:0.17 QI:15|0.75|0.6|1|1|0.8|5|0|536; (*GB) gi|356567464|ref|XP_003551939.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=2e-23) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT3G26100.2 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr3:9538063-9540149 FORWARD LENGTH=532;; (*ITAG) Solyc05g014030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7532703-7535318 transcript_region:SL2.40ch05:7532703..7535318- go_terms:GO:0003682 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 **-- Q8MP76_DICDI); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0003682 NbS00037685g0002.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|505; (*GB) gi|224143170|ref|XP_002336002.1| (e_value=3e-156) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|P98188|C94A2_VICSA (e_value=7e-148) Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1;; (*TAIR) AT3G48520.1 (e_value=6e-113) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc09g066150.1.1 (e_value=1e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60174324-60175832 transcript_region:SL2.40ch09:60174324..60175832+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00011329g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.2|1|1|1|5|0|464; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00011329g0008.1 protein AED:0.10 eAED:0.10 QI:158|0.75|0.8|1|0.75|0.6|5|108|499; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00011329g0005.1 protein AED:0.87 eAED:0.90 QI:0|0|0|0.4|1|1|5|0|151 NbS00032243g0016.1 protein AED:0.09 eAED:0.09 QI:420|0.75|0.8|1|1|1|5|418|248; (*GB) gi|301070456|gb|ADK55590.1| (e_value=1e-121) plastid NEP interaction protein [Nicotiana benthamiana];; (*SWP) sp|Q8GT74|NIP2_ARATH (e_value=8e-97) NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1 SV=1;; (*TAIR) AT2G17730.1 (e_value=6e-98) | Symbols: NIP2 | NEP-interacting protein 2 | chr2:7704142-7705312 FORWARD LENGTH=241;; (*ITAG) Solyc02g062040.2.1 (e_value=3e-141) genomic_reference:SL2.40ch02 gene_region:28194736-28197111 transcript_region:SL2.40ch02:28194736..28197111- go_terms:GO:0005515 functional_description:"RING finger-like (AHRD V1 *-*- Q5Z6V1_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00032243g0023.1 protein AED:0.26 eAED:0.26 QI:215|1|1|1|0.88|0.9|10|352|483; (*GB) gi|225457901|ref|XP_002271105.1| (e_value=1e-161) PREDICTED: uncharacterized protein LOC100259195 [Vitis vinifera];; (*SWP) sp|Q5R5R4|RUFY2_PONAB (e_value=2e-12) RUN and FYVE domain-containing protein 2 OS=Pongo abelii GN=RUFY2 PE=2 SV=1;; (*TAIR) AT1G20110.1 (e_value=3e-150) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc02g062000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28157260-28164320 transcript_region:SL2.40ch02:28157260..28164320- go_terms:GO:0005515,GO:0035091 functional_description:"RUN and FYVE domain-containing protein 1 (AHRD V1 *--- B0WS48_CULQU); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00032243g0017.1 protein AED:0.41 eAED:0.42 QI:0|0.57|0.62|0.87|0.85|0.87|8|0|181; (*GB) gi|115110983|gb|ABI84104.1| (e_value=3e-101) GTP-binding Rop/Rac GTPase [Petunia integrifolia subsp. inflata];; (*SWP) sp|P92978|RAC11_ARATH (e_value=7e-99) Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2;; (*TAIR) AT3G51300.1 (e_value=5e-100) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g062020.2.1 (e_value=4e-109) genomic_reference:SL2.40ch02 gene_region:28182920-28187850 transcript_region:SL2.40ch02:28182920..28187850- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00032243g0025.1 protein AED:0.04 eAED:0.04 QI:1|0.5|0.33|0.66|0.5|0.66|3|173|544; (*GB) gi|85068628|gb|ABC69394.1| (e_value=0.0) CYP71D47v1 [Nicotiana tabacum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=9e-134) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc02g062030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28192771-28194362 transcript_region:SL2.40ch02:28192771..28194362+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032243g0024.1 protein AED:0.39 eAED:0.39 QI:1|0|0|1|0|0|3|0|139; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042420.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43129413-43132685 transcript_region:SL2.40ch12:43129413..43132685- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00000623g0009.1 protein AED:0.09 eAED:0.09 QI:183|0.77|0.78|1|0.88|0.84|19|0|800; (*GB) gi|260505494|gb|ACX42226.1| (e_value=0.0) heat shock protein 90 [Ipomoea nil];; (*SWP) sp|P51819|HSP83_IPONI (e_value=5e-164) Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1;; (*TAIR) AT2G04030.1 (e_value=0.0) | Symbols: CR88, EMB1956, HSP90.5, Hsp88.1, AtHsp90.5 | Chaperone protein htpG family protein | chr2:1281983-1285909 FORWARD LENGTH=780;; (*ITAG) Solyc05g010670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4883167-4891847 transcript_region:SL2.40ch05:4883167..4891847- go_terms:GO:0005524 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_MYXXD); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524 NbS00004276g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|225440506|ref|XP_002272579.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100254612 [Vitis vinifera];; (*TAIR) AT2G37880.1 (e_value=7e-75) | Symbols: | Protein of unknown function, DUF617 | chr2:15860705-15861448 FORWARD LENGTH=247;; (*ITAG) Solyc09g011350.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4686265-4687011 transcript_region:SL2.40ch09:4686265..4687011+ functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TGK3_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00004276g0009.1 protein AED:0.15 eAED:0.16 QI:0|0.85|0.75|1|0.85|0.87|8|839|448; (*GB) gi|225440504|ref|XP_002272506.1| (e_value=9e-156) PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera];; (*TAIR) AT2G37860.3 (e_value=1e-143) | Symbols: LCD1 | Protein of unknown function (DUF3411) | chr2:15856952-15858793 FORWARD LENGTH=432;; (*ITAG) Solyc09g011340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4674684-4681714 transcript_region:SL2.40ch09:4674684..4681714+ functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; NbS00059902g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|461; (*GB) gi|302142171|emb|CBI19374.3| (e_value=9e-77) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10720.1 (e_value=1e-52) | Symbols: | BSD domain-containing protein | chr1:3562964-3564446 FORWARD LENGTH=429;; (*ITAG) Solyc07g022920.2.1 (e_value=6e-163) genomic_reference:SL2.40ch07 gene_region:23328209-23340163 transcript_region:SL2.40ch07:23328209..23340163- functional_description:"BSD domain containing protein expressed (AHRD V1 ***- Q851F1_ORYSJ); contains Interpro domain(s) IPR005607 BSD "; NbS00010464g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|147 NbS00003904g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.77|0.6|1|0.22|0.4|10|810|840; (*GB) gi|359478824|ref|XP_002283784.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257047 [Vitis vinifera];; (*SWP) sp|Q9BVG8|KIFC3_HUMAN (e_value=8e-64) Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=4;; (*TAIR) AT1G55550.1 (e_value=8e-153) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:20748915-20752862 FORWARD LENGTH=859;; (*ITAG) Solyc01g049820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:41683950-41688584 transcript_region:SL2.40ch01:41683950..41688584- functional_description:"Unknown Protein (AHRD V1)"; NbS00003904g0016.1 protein AED:0.19 eAED:0.19 QI:176|1|1|1|0.5|1|3|371|124; (*GB) gi|255560493|ref|XP_002521261.1| (e_value=3e-75) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9UTE8|IES6_SCHPO (e_value=5e-22) Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ies6 PE=2 SV=1;; (*TAIR) AT4G38495.1 (e_value=7e-62) | Symbols: | CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:18007466-18008025 REVERSE LENGTH=124;; (*ITAG) Solyc06g007480.2.1 (e_value=1e-86) genomic_reference:SL2.40ch06 gene_region:1485693-1489824 transcript_region:SL2.40ch06:1485693..1489824+ functional_description:"INO80 complex subunit (AHRD V1 *-*- A6ZQQ6_YEAS7); contains Interpro domain(s) IPR013272 YL1 nuclear, C-terminal "; NbS00003904g0014.1 protein AED:0.64 eAED:0.75 QI:0|0|0.33|0.66|0|0|3|0|85 NbS00003904g0017.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|573; (*GB) gi|147774372|emb|CAN72397.1| (e_value=2e-178) hypothetical protein VITISV_041201 [Vitis vinifera];; (*SWP) sp|Q9FMA1|PP433_ARATH (e_value=2e-134) Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1;; (*TAIR) AT5G56310.1 (e_value=2e-135) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22802322-22803914 FORWARD LENGTH=530;; (*ITAG) Solyc01g049810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:41678686-41680567 transcript_region:SL2.40ch01:41678686..41680567+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00000124g0005.1 protein AED:0.29 eAED:0.29 QI:367|0.77|0.7|1|0.66|0.7|10|0|827; (*GB) gi|255581359|ref|XP_002531489.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q9FY75|POT7_ARATH (e_value=0.0) Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2;; (*TAIR) AT5G09400.1 (e_value=0.0) | Symbols: KUP7 | K+ uptake permease 7 | chr5:2916377-2920604 FORWARD LENGTH=858;; (*ITAG) Solyc10g047270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35783789-35806046 transcript_region:SL2.40ch10:35783789..35806046+ go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00000124g0101.1 protein AED:0.24 eAED:0.24 QI:419|0.8|0.66|1|0.6|0.5|6|0|286 NbS00000124g0103.1 protein AED:0.67 eAED:0.87 QI:0|0|0|0.66|1|1|3|0|186 NbS00028192g0003.1 protein AED:0.23 eAED:0.27 QI:0|0|0|0.66|1|1|3|0|147; (*GB) gi|224069160|ref|XP_002326289.1| (e_value=5e-55) copper transporter [Populus trichocarpa];; (*SWP) sp|Q93VM8|COPT5_ARATH (e_value=2e-47) Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1;; (*TAIR) AT5G20650.1 (e_value=1e-48) | Symbols: COPT5 | copper transporter 5 | chr5:6985481-6985921 REVERSE LENGTH=146;; (*ITAG) Solyc02g082080.1.1 (e_value=3e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40382591-40383040 transcript_region:SL2.40ch02:40382591..40383040- go_terms:GO:0015088 functional_description:"High affinity copper uptake protein (AHRD V1 **** Q8QH07_DANRE); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0015088 NbS00028192g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.75|1|0.66|0.75|4|213|405; (*GB) gi|225429710|ref|XP_002280196.1| (e_value=1e-161) PREDICTED: serine/threonine-protein kinase At5g01020 [Vitis vinifera];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=5e-112) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G05940.1 (e_value=1e-140) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc08g061250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45514851-45516921 transcript_region:SL2.40ch08:45514851..45516921+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00028192g0008.1 protein AED:0.28 eAED:0.32 QI:99|0.7|0.63|1|0.3|0.45|11|0|323; (*GB) gi|225429712|ref|XP_002281957.1| (e_value=7e-168) PREDICTED: G-protein coupled receptor 1 [Vitis vinifera];; (*SWP) sp|O04714|GCR1_ARATH (e_value=4e-151) G-protein coupled receptor 1 OS=Arabidopsis thaliana GN=GCR1 PE=1 SV=1;; (*TAIR) AT1G48270.1 (e_value=3e-152) | Symbols: GCR1 | G-protein-coupled receptor 1 | chr1:17828314-17830214 REVERSE LENGTH=326;; (*ITAG) Solyc08g061260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45542294-45550193 transcript_region:SL2.40ch08:45542294..45550193+ go_terms:GO:0005515 functional_description:"G-protein-coupled receptor 1 (AHRD V1 ***- D7KC35_ARALY); contains Interpro domain(s) IPR000848 cAMP-type GPCR "; GO:0005515 NbS00030942g0003.1 protein AED:0.04 eAED:0.04 QI:110|1|1|1|1|1|3|167|287; (*GB) gi|147839228|emb|CAN65690.1| (e_value=1e-119) hypothetical protein VITISV_022466 [Vitis vinifera];; (*SWP) sp|O80494|P2B15_ARATH (e_value=7e-87) F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2;; (*TAIR) AT1G09155.1 (e_value=5e-88) | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B15 | chr1:2949831-2950842 REVERSE LENGTH=289;; (*ITAG) Solyc01g099990.2.1 (e_value=9e-165) genomic_reference:SL2.40ch01 gene_region:81840818-81842579 transcript_region:SL2.40ch01:81840818..81842579- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00022860g0009.1 protein AED:0.00 eAED:0.00 QI:214|1|1|1|1|1|5|259|421; (*GB) gi|255569078|ref|XP_002525508.1| (e_value=4e-134) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q8RX37|P2C02_ARATH (e_value=4e-87) Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1;; (*TAIR) AT1G07160.1 (e_value=3e-88) | Symbols: | Protein phosphatase 2C family protein | chr1:2198155-2199678 REVERSE LENGTH=380;; (*ITAG) Solyc06g082080.2.1 (e_value=5e-93) genomic_reference:SL2.40ch06 gene_region:44304768-44306777 transcript_region:SL2.40ch06:44304768..44306777+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00015326g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|255557215|ref|XP_002519638.1| (e_value=1e-53) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q8LF89|GRXC8_ARATH (e_value=2e-33) Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2;; (*TAIR) AT5G14070.1 (e_value=2e-34) | Symbols: ROXY2 | Thioredoxin superfamily protein | chr5:4541915-4542337 FORWARD LENGTH=140;; (*ITAG) Solyc08g036570.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:25745969-25746349 transcript_region:SL2.40ch08:25745969..25746349- go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9GF65_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00020711g0003.1 protein AED:0.35 eAED:0.54 QI:0|0|0|1|0|0|2|0|125; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-15) hypothetical protein [Nicotiana tabacum]; NbS00027687g0006.1 protein AED:0.24 eAED:0.24 QI:161|0.9|0.81|1|0.7|0.81|11|604|455; (*GB) gi|224068935|ref|XP_002326235.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G36630.1 (e_value=4e-177) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:15352767-15355050 REVERSE LENGTH=459;; (*ITAG) Solyc09g008780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2206511-2210995 transcript_region:SL2.40ch09:2206511..2210995+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 *-*- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00003161g0001.1 protein AED:0.21 eAED:0.34 QI:0|0|0|1|1|1|2|0|201; (*GB) gi|224081417|ref|XP_002306402.1| (e_value=7e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12870.1 (e_value=2e-72) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4094417-4095037 REVERSE LENGTH=206;; (*ITAG) Solyc07g066540.1.1 (e_value=6e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65158649-65159251 transcript_region:SL2.40ch07:65158649..65159251+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003161g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0.33|0.25|4|0|229; (*GB) gi|296081493|emb|CBI20016.3| (e_value=7e-101) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=5e-89) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G56145.1 (e_value=6e-94) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:21008225-21013934 REVERSE LENGTH=1012;; (*ITAG) Solyc07g066550.2.1 (e_value=4e-112) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00046794g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.8|0.5|1|1|1|6|0|438; (*GB) gi|271278821|emb|CAY85529.1| (e_value=0.0) Cop11 protein [Carica papaya];; (*SWP) sp|P45432|CSN1_ARATH (e_value=0.0) COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2;; (*TAIR) AT3G61140.1 (e_value=0.0) | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr3:22626335-22628895 FORWARD LENGTH=441;; (*ITAG) Solyc01g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77004990-77009999 transcript_region:SL2.40ch01:77004990..77009999- go_terms:GO:0031995 functional_description:"COP9 signalosome complex subunit 1 (AHRD V1 ***- B6THB6_MAIZE); contains Interpro domain(s) IPR019585 26S proteasome, regulatory subunit Rpn7 "; GO:0031995 NbS00032317g0001.1 protein AED:0.40 eAED:0.41 QI:0|1|0.8|1|1|1|5|0|211; (*GB) gi|262192723|gb|ACY30431.1| (e_value=2e-131) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q15428|SF3A2_HUMAN (e_value=1e-73) Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2;; (*TAIR) AT2G32600.1 (e_value=2e-122) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:13833779-13835525 REVERSE LENGTH=277;; (*ITAG) Solyc09g008470.2.1 (e_value=4e-133) genomic_reference:SL2.40ch09 gene_region:1916797-1921294 transcript_region:SL2.40ch09:1916797..1921294+ go_terms:GO:0005634,GO:0008270 functional_description:"Splicing factor 3a subunit 2 (AHRD V1 ***- D8U746_VOLCA); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00032317g0010.1 protein AED:0.13 eAED:0.13 QI:280|0.88|0.7|1|0.66|0.7|10|0|845; (*GB) gi|225441143|ref|XP_002265706.1| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 9-like [Vitis vinifera];; (*SWP) sp|Q8L850|PI5K9_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana GN=PIP5K9 PE=1 SV=2;; (*TAIR) AT3G09920.3 (e_value=0.0) | Symbols: PIP5K9 | phosphatidyl inositol monophosphate 5 kinase | chr3:3040426-3043676 REVERSE LENGTH=815;; (*ITAG) Solyc09g008480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1921241-1929572 transcript_region:SL2.40ch09:1921241..1929572- go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase 9 (AHRD V1 ***- B6SXI7_MAIZE); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00028422g0012.1 protein AED:0.07 eAED:0.07 QI:13|0.5|0.33|1|0|0|3|0|263; (*GB) gi|356537435|ref|XP_003537233.1| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100810879 [Glycine max];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=2e-14) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT5G02750.1 (e_value=2e-32) | Symbols: | RING/U-box superfamily protein | chr5:620101-620952 FORWARD LENGTH=283;; (*ITAG) Solyc09g007060.2.1 (e_value=3e-98) genomic_reference:SL2.40ch09 gene_region:712078-714475 transcript_region:SL2.40ch09:712078..714475+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00028422g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|662; (*GB) gi|225439799|ref|XP_002273893.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Vitis vinifera];; (*SWP) sp|Q9ZUT5|PP191_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1;; (*TAIR) AT2G37310.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15665102-15667075 REVERSE LENGTH=657;; (*ITAG) Solyc09g007050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:707483-709438 transcript_region:SL2.40ch09:707483..709438+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJR5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00028422g0011.1 protein AED:0.24 eAED:0.26 QI:18|0.56|0.58|1|0.81|0.82|17|0|800; (*GB) gi|147794019|emb|CAN60112.1| (e_value=1e-150) hypothetical protein VITISV_018380 [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-58) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=7e-83) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc09g007030.2.1 (e_value=2e-159) genomic_reference:SL2.40ch09 gene_region:694635-701527 transcript_region:SL2.40ch09:694635..701527+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- D8PT11_SCHCO); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00028422g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|4|0|372; (*GB) gi|297741566|emb|CBI32698.3| (e_value=6e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LFI1|PP280_ARATH (e_value=8e-91) Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1;; (*TAIR) AT3G53360.1 (e_value=6e-92) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19784502-19786808 FORWARD LENGTH=768;; (*ITAG) Solyc09g007040.1.1 (e_value=2e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:703220-705475 transcript_region:SL2.40ch09:703220..705475- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUH3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00028422g0015.1 protein AED:0.54 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|109; (*GB) gi|147784524|emb|CAN61725.1| (e_value=8e-14) hypothetical protein VITISV_032420 [Vitis vinifera];; (*ITAG) Solyc09g007040.1.1 (e_value=9e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:703220-705475 transcript_region:SL2.40ch09:703220..705475- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUH3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00016106g0015.1 protein AED:0.17 eAED:0.17 QI:231|0.66|0.62|0.93|0.8|0.75|16|0|1493; (*GB) gi|359473809|ref|XP_002264994.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254102 [Vitis vinifera];; (*TAIR) AT1G24300.1 (e_value=5e-74) | Symbols: | GYF domain-containing protein | chr1:8614515-8620420 REVERSE LENGTH=1495;; (*ITAG) Solyc05g015920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12975786-12984207 transcript_region:SL2.40ch05:12975786..12984207- functional_description:"GYF domain-containing protein (AHRD V1 ***- D7KBQ1_ARALY); contains Interpro domain(s) IPR003169 GYF "; NbS00016106g0016.1 protein AED:0.13 eAED:0.15 QI:267|0.81|0.75|1|0.81|0.66|12|518|597; (*GB) gi|332371918|dbj|BAK22409.1| (e_value=0.0) glucose-6-phosphate dehydrogenase [Nicotiana benthamiana];; (*SWP) sp|Q43793|G6PDC_TOBAC (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G13110.1 (e_value=0.0) | Symbols: G6PD2 | glucose-6-phosphate dehydrogenase 2 | chr5:4158952-4161640 FORWARD LENGTH=596;; (*ITAG) Solyc05g015950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13085212-13089624 transcript_region:SL2.40ch05:13085212..13089624- go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** Q8H9C8_SOLTU); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00011684g0105.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|125 NbS00011684g0109.1 protein AED:0.27 eAED:0.27 QI:217|0.75|0.55|1|1|1|9|0|754 NbS00025554g0005.1 protein AED:0.22 eAED:0.30 QI:0|0.2|0|1|0.2|0|6|0|354; (*GB) gi|61223199|gb|AAX40666.1| (e_value=3e-129) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=1e-78) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=6e-53) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc12g006570.1.1 (e_value=5e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00025554g0003.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|85; (*GB) gi|61223199|gb|AAX40666.1| (e_value=1e-31) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H2|TPSVS_VITVI (e_value=4e-16) Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1;; (*TAIR) AT5G48110.1 (e_value=2e-15) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr5:19501157-19504357 REVERSE LENGTH=575;; (*ITAG) Solyc07g051940.2.1 (e_value=9e-35) genomic_reference:SL2.40ch07 gene_region:57815208-57818076 transcript_region:SL2.40ch07:57815208..57818076- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00057237g0008.1 protein AED:0.33 eAED:0.34 QI:0|0.28|0.25|0.87|0.28|0.62|8|0|410; (*GB) gi|224133440|ref|XP_002321568.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62570.1 (e_value=2e-39) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113940.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:58039947-58042453 transcript_region:SL2.40ch03:58039947..58042453+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00007283g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|0|1|0|351; (*GB) gi|296082044|emb|CBI21049.3| (e_value=2e-141) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G32290.1 (e_value=2e-133) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:15589839-15590993 REVERSE LENGTH=384;; (*ITAG) Solyc04g009760.1.1 (e_value=9e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:3075183-3076217 transcript_region:SL2.40ch04:3075183..3076217- go_terms:GO:0005515 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00012603g0007.1 protein AED:0.46 eAED:0.46 QI:13|0|0.16|0.33|0.4|0.5|6|0|393; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=6e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC25811941g0003.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|2|0|214; (*GB) gi|255545508|ref|XP_002513814.1| (e_value=9e-107) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G75710.1 (e_value=3e-70) | Symbols: | C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462;; (*ITAG) Solyc11g013220.1.1 (e_value=2e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6128095-6131640 transcript_region:SL2.40ch11:6128095..6131640+ go_terms:GO:0005622 functional_description:"Os04g0690100 protein (Fragment) (AHRD V1 ***- Q0J8S4_ORYSJ)"; GO:0005622 NbS00008902g0016.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|1|0.66|3|0|150; (*ITAG) Solyc06g050740.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:30014138-30015077 transcript_region:SL2.40ch06:30014138..30015077+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00008902g0015.1 protein AED:0.22 eAED:0.22 QI:72|0.87|1|1|1|1|9|620|436; (*GB) gi|255567389|ref|XP_002524674.1| (e_value=0.0) Sphingosine kinase, putative [Ricinus communis];; (*SWP) sp|Q86KF9|SPHKA_DICDI (e_value=3e-34) Sphingosine kinase A OS=Dictyostelium discoideum GN=sgkA PE=2 SV=2;; (*TAIR) AT4G21540.1 (e_value=1e-178) | Symbols: SPHK1 | sphingosine kinase 1 | chr4:11459609-11462356 FORWARD LENGTH=485;; (*ITAG) Solyc02g079030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38231100-38238119 transcript_region:SL2.40ch02:38231100..38238119- go_terms:GO:0017050 functional_description:"Sphingosine kinase 1 (AHRD V1 **** Q28EJ9_XENTR); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00008902g0014.1 protein AED:0.31 eAED:0.32 QI:0|0.72|0.5|1|0.54|0.58|12|0|844; (*GB) gi|224076806|ref|XP_002305001.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0D5G4|Y7633_ORYSJ (e_value=1e-171) B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2;; (*TAIR) AT4G32010.1 (e_value=2e-141) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc02g079020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38216434-38227691 transcript_region:SL2.40ch02:38216434..38227691- go_terms:GO:0005515,GO:0003700,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0003700,GO:0016564 NbS00008902g0017.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|116; (*ITAG) Solyc03g034340.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00022814g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|11|643|486; (*GB) gi|224081597|ref|XP_002306462.1| (e_value=0.0) CPK related kinase 5 [Populus trichocarpa];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT3G50530.1 (e_value=0.0) | Symbols: CRK | CDPK-related kinase | chr3:18753833-18756487 FORWARD LENGTH=601;; (*ITAG) Solyc01g108400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87497215-87503003 transcript_region:SL2.40ch01:87497215..87503003+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 **** Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00010728g0004.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|0|0|3|0|219 NbS00038933g0001.1 protein AED:0.70 eAED:0.85 QI:0|0|0|0.66|1|1|3|0|222 NbS00038933g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.66|0|0|3|0|180; (*GB) gi|357489585|ref|XP_003615080.1| (e_value=3e-52) Polygalacturonase [Medicago truncatula];; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=2e-46) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT1G17150.1 (e_value=2e-47) | Symbols: | Pectin lyase-like superfamily protein | chr1:5865707-5867495 FORWARD LENGTH=402;; (*ITAG) Solyc01g009640.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3880652-3883446 transcript_region:SL2.40ch01:3880652..3883446- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- C0JAE6_9ORYZ); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00038933g0008.1 protein AED:0.42 eAED:0.84 QI:0|0|0|0.66|0|0|3|0|69 NbS00011742g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|259453|gb|AAB24078.1| (e_value=3e-41) lipid body membrane protein [Daucus carota];; (*SWP) sp|Q9SS98|OLEO5_ARATH (e_value=3e-31) Oleosin 5 OS=Arabidopsis thaliana GN=At3g01570 PE=1 SV=1;; (*TAIR) AT3G01570.1 (e_value=2e-32) | Symbols: | Oleosin family protein | chr3:222152-222778 REVERSE LENGTH=183;; (*ITAG) Solyc02g086490.2.1 (e_value=5e-46) genomic_reference:SL2.40ch02 gene_region:43743121-43743933 transcript_region:SL2.40ch02:43743121..43743933+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q43123_DAUCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00050976g0005.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|64 NbS00050976g0007.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|172; (*GB) gi|225428906|ref|XP_002285382.1| (e_value=2e-32) PREDICTED: uncharacterized protein LOC100250399 [Vitis vinifera];; (*TAIR) AT2G15270.1 (e_value=3e-28) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). | chr2:6637967-6639252 FORWARD LENGTH=194;; (*ITAG) Solyc01g107610.2.1 (e_value=3e-45) genomic_reference:SL2.40ch01 gene_region:86866986-86870073 transcript_region:SL2.40ch01:86866986..86870073+ functional_description:"PRKR interacting protein 1 (AHRD V1 *-*- B6TNU4_MAIZE); contains Interpro domain(s) IPR009548 Protein of unknown function DUF1168 "; NbS00050976g0001.1 protein AED:0.35 eAED:0.35 QI:0|0.83|0.71|0.85|0.83|0.71|7|467|250; (*GB) gi|225428904|ref|XP_002285375.1| (e_value=2e-91) PREDICTED: reticulon family protein-like [Vitis vinifera];; (*SWP) sp|Q9LT71|RTNLK_ARATH (e_value=3e-67) Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1;; (*TAIR) AT3G19460.1 (e_value=2e-68) | Symbols: | Reticulon family protein | chr3:6747600-6748904 FORWARD LENGTH=200;; (*ITAG) Solyc01g107620.2.1 (e_value=3e-132) genomic_reference:SL2.40ch01 gene_region:86871262-86877432 transcript_region:SL2.40ch01:86871262..86877432+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7L3K1_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbC26143923g0005.1 protein AED:0.16 eAED:0.19 QI:0|0.77|0.7|1|0.77|0.8|10|555|557; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q56078|BGLX_SALTY (e_value=5e-47) Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX PE=3 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc06g073760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41905608-41910016 transcript_region:SL2.40ch06:41905608..41910016+ go_terms:GO:0009044 functional_description:"Beta-D-glucosidase (AHRD V1 **** O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00016703g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|444; (*GB) gi|224083705|ref|XP_002307092.1| (e_value=7e-117) predicted protein [Populus trichocarpa];; (*TAIR) AT4G39840.1 (e_value=4e-116) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 20719 Blast hits to 6096 proteins in 607 species: Archae - 22; Bacteria - 3243; Metazoa - 4364; Fungi - 2270; Plants - 237; Viruses - 128; Other Eukaryotes - 10455 (source: NCBI BLink). | chr4:18485268-18486623 FORWARD LENGTH=451;; (*ITAG) Solyc03g078640.1.1 (e_value=5e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44805863-44807317 transcript_region:SL2.40ch03:44805863..44807317- functional_description:"Unknown Protein (AHRD V1)"; NbS00059216g0005.1 protein AED:0.06 eAED:0.06 QI:498|1|1|1|0.4|0.5|6|156|276; (*GB) gi|225426874|ref|XP_002283557.1| (e_value=2e-157) PREDICTED: general transcription factor IIE subunit 2 [Vitis vinifera];; (*SWP) sp|Q54KJ8|T2EB_DICDI (e_value=2e-17) General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1;; (*TAIR) AT4G20330.1 (e_value=9e-117) | Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:10982683-10984039 REVERSE LENGTH=286;; (*ITAG) Solyc06g064890.2.1 (e_value=6e-154) genomic_reference:SL2.40ch06 gene_region:36836320-36839870 transcript_region:SL2.40ch06:36836320..36839870- functional_description:"Transcription initiation factor IIE subunit beta (AHRD V1 ***- B6JXL9_SCHJY); contains Interpro domain(s) IPR017935 Transcription factor TFIIE beta subunit-like, DNA-binding "; NbS00013574g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|225427824|ref|XP_002275925.1| (e_value=6e-130) PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930-like [Vitis vinifera];; (*SWP) sp|Q9STE1|PP333_ARATH (e_value=9e-59) Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1;; (*TAIR) AT4G21300.1 (e_value=7e-60) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11336479-11339052 FORWARD LENGTH=857;; (*ITAG) Solyc10g054730.1.1 (e_value=1e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51283241-51284677 transcript_region:SL2.40ch10:51283241..51284677- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013574g0006.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|64; (*GB) gi|225427810|ref|XP_002270504.1| (e_value=4e-19) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*TAIR) AT4G38860.1 (e_value=5e-17) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18130357-18130674 FORWARD LENGTH=105;; (*ITAG) Solyc04g081270.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62890273-62890599 transcript_region:SL2.40ch04:62890273..62890599- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00013574g0008.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0|2|0|99; (*GB) gi|224080532|ref|XP_002306153.1| (e_value=1e-21) SAUR family protein [Populus trichocarpa];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=9e-18) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G03840.1 (e_value=4e-21) | Symbols: | SAUR-like auxin-responsive protein family | chr3:981258-981545 FORWARD LENGTH=95;; (*ITAG) Solyc11g011720.1.1 (e_value=8e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4710076-4710354 transcript_region:SL2.40ch11:4710076..4710354+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00026964g0003.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|224132728|ref|XP_002327866.1| (e_value=8e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=2e-66) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=2e-67) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc06g083000.1.1 (e_value=4e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44867806-44868255 transcript_region:SL2.40ch06:44867806..44868255- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00026964g0007.1 protein AED:0.36 eAED:0.39 QI:0|0.5|0.66|1|0|0|3|125|140; (*GB) gi|357504857|ref|XP_003622717.1| (e_value=3e-25) Ferredoxin [Medicago truncatula];; (*TAIR) AT3G07480.1 (e_value=3e-26) | Symbols: | 2Fe-2S ferredoxin-like superfamily protein | chr3:2389026-2389505 FORWARD LENGTH=159;; (*ITAG) Solyc06g007630.1.1 (e_value=5e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1644026-1644511 transcript_region:SL2.40ch06:1644026..1644511+ go_terms:GO:0009055 functional_description:"Ferredoxin (AHRD V1 ***- B6TR21_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00054136g0013.1 protein AED:0.35 eAED:0.37 QI:0|1|0.25|1|0.66|0.5|4|0|181; (*GB) gi|83778371|gb|ABC47126.1| (e_value=2e-97) expansin-like protein precursor [Solanum tuberosum];; (*SWP) sp|Q9SVE5|EXLA2_ARATH (e_value=2e-74) Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1;; (*TAIR) AT4G38400.1 (e_value=1e-75) | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 | expansin-like A2 | chr4:17978675-17979665 REVERSE LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=1e-99) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00054136g0009.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|1|1|2|0|287; (*GB) gi|255544079|ref|XP_002513102.1| (e_value=4e-56) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G38800.1 (e_value=8e-21) | Symbols: | Plant calmodulin-binding protein-related | chr2:16216999-16218837 FORWARD LENGTH=612;; (*ITAG) Solyc01g068460.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:70091158-70094189 transcript_region:SL2.40ch01:70091158..70094189- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *-*- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00054136g0004.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|274; (*GB) gi|225438297|ref|XP_002272395.1| (e_value=5e-44) PREDICTED: uncharacterized protein LOC100247519 [Vitis vinifera];; (*TAIR) AT2G38800.1 (e_value=9e-31) | Symbols: | Plant calmodulin-binding protein-related | chr2:16216999-16218837 FORWARD LENGTH=612;; (*ITAG) Solyc01g068460.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:70091158-70094189 transcript_region:SL2.40ch01:70091158..70094189- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *-*- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00054136g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|115; (*ITAG) Solyc01g068460.2.1 (e_value=6e-35) genomic_reference:SL2.40ch01 gene_region:70091158-70094189 transcript_region:SL2.40ch01:70091158..70094189- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *-*- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00054136g0010.1 protein AED:0.14 eAED:0.14 QI:84|1|1|1|0.75|0.8|5|535|170; (*GB) gi|225438299|ref|XP_002270204.1| (e_value=1e-52) PREDICTED: uncharacterized protein LOC100262774 [Vitis vinifera];; (*TAIR) AT3G15750.1 (e_value=9e-33) | Symbols: | Essential protein Yae1, N-terminal | chr3:5335089-5336184 FORWARD LENGTH=199;; (*ITAG) Solyc01g068450.2.1 (e_value=1e-72) genomic_reference:SL2.40ch01 gene_region:70089237-70090777 transcript_region:SL2.40ch01:70089237..70090777+ functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW04_ARATH); contains Interpro domain(s) IPR019191 Essential protein Yae1, N-terminal "; NbS00039552g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|688; (*GB) gi|357443673|ref|XP_003592114.1| (e_value=2e-91) GT-2 factor [Medicago truncatula];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=7e-80) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76890.2 (e_value=5e-81) | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like superfamily protein | chr1:28873211-28875203 REVERSE LENGTH=575;; (*ITAG) Solyc04g071360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55934673-55937721 transcript_region:SL2.40ch04:55934673..55937721+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK04_9ASPA); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00039552g0009.1 protein AED:0.84 eAED:0.84 QI:53|0|0.25|0.25|1|1|4|0|59 NbS00039552g0112.1 protein AED:0.20 eAED:0.21 QI:31|0|0.5|1|1|1|2|369|479 NbS00001330g0003.1 protein AED:0.26 eAED:0.32 QI:262|0.90|0.83|1|0.72|0.66|12|390|358; (*GB) gi|225434453|ref|XP_002273518.1| (e_value=7e-127) PREDICTED: probable protein phosphatase 2C 26 [Vitis vinifera];; (*SWP) sp|O64730|P2C26_ARATH (e_value=7e-115) Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170 PE=2 SV=2;; (*TAIR) AT2G30170.1 (e_value=5e-116) | Symbols: | Protein phosphatase 2C family protein | chr2:12879802-12881474 REVERSE LENGTH=298;; (*ITAG) Solyc06g007350.2.1 (e_value=5e-163) genomic_reference:SL2.40ch06 gene_region:1383164-1387979 transcript_region:SL2.40ch06:1383164..1387979+ go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00022857g0008.1 protein AED:0.10 eAED:0.16 QI:27|0|0.2|1|0.25|0.4|5|630|365; (*GB) gi|302142715|emb|CBI19918.3| (e_value=4e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LLL8|XSP1_ARATH (e_value=1e-34) Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1;; (*TAIR) AT1G20150.1 (e_value=2e-61) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr1:6987332-6990361 REVERSE LENGTH=780;; (*ITAG) Solyc01g006660.1.1 (e_value=9e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1249071-1255565 transcript_region:SL2.40ch01:1249071..1255565- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8LAE1_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00022857g0002.1 protein AED:0.16 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|359493640|ref|XP_002282675.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Vitis vinifera];; (*SWP) sp|Q56X05|PPR15_ARATH (e_value=4e-179) Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2;; (*TAIR) AT1G06150.1 (e_value=2e-171) | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322;; (*ITAG) Solyc05g009400.1.1 (e_value=8e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3549555-3551952 transcript_region:SL2.40ch05:3549555..3551952+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LNV1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006894g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|345; (*GB) gi|147805357|emb|CAN71956.1| (e_value=9e-172) hypothetical protein VITISV_009884 [Vitis vinifera];; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=4e-145) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=3e-146) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc09g009470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2898056-2899315 transcript_region:SL2.40ch09:2898056..2899315+ functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00055808g0004.1 protein AED:0.04 eAED:0.04 QI:99|0.83|0.85|1|0.66|0.71|7|380|332; (*GB) gi|39598908|gb|AAR28998.1| (e_value=0.0) CMV 1a interacting protein 1 [Nicotiana tabacum];; (*ITAG) Solyc10g008020.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2183877-2189041 transcript_region:SL2.40ch10:2183877..2189041+ go_terms:GO:0008152 functional_description:"Methyltransferase (AHRD V1 *-*- B8H501_CAUCN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00018083g0006.1 protein AED:0.24 eAED:0.24 QI:139|1|1|1|0.7|0.72|11|658|767; (*GB) gi|225442611|ref|XP_002284502.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Vitis vinifera];; (*SWP) sp|P46607|HGL2_ARATH (e_value=0.0) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.1 (e_value=0.0) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747;; (*ITAG) Solyc03g120620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00018083g0004.1 protein AED:0.99 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|108 NbS00018083g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|225442609|ref|XP_002284468.1| (e_value=6e-35) PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P16180|RR17_ARATH (e_value=7e-33) 30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=2 SV=1;; (*TAIR) AT1G79850.1 (e_value=6e-34) | Symbols: RPS17, CS17, PRPS17 | ribosomal protein S17 | chr1:30041473-30041922 REVERSE LENGTH=149;; (*ITAG) Solyc03g120630.2.1 (e_value=1e-48) genomic_reference:SL2.40ch03 gene_region:63028075-63029073 transcript_region:SL2.40ch03:63028075..63029073- go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 *-*- D8JV24_HYPDA); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00028687g0010.1 protein AED:0.17 eAED:0.18 QI:0|0.66|0.25|1|0.66|0.75|4|0|430; (*GB) gi|255549902|ref|XP_002516002.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G16200.1 (e_value=0.0) | Symbols: | unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr3:5491619-5493605 REVERSE LENGTH=456;; (*ITAG) Solyc03g120490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62926123-62930230 transcript_region:SL2.40ch03:62926123..62930230+ functional_description:"Genomic DNA chromosome 3 P1 clone MYA6 (AHRD V1 ***- Q9LU25_ARATH)"; NbS00028687g0011.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|1|3|0|242; (*GB) gi|12006841|gb|AAG44945.1|AF290618_1 (e_value=1e-122) putative delta TIP [Nicotiana glauca];; (*SWP) sp|Q41951|TIP21_ARATH (e_value=2e-100) Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2;; (*TAIR) AT3G16240.1 (e_value=2e-101) | Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250;; (*ITAG) Solyc12g044330.1.1 (e_value=8e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:44709498-44710732 transcript_region:SL2.40ch12:44709498..44710732+ go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00028687g0012.1 protein AED:0.13 eAED:0.13 QI:222|0.75|0.76|1|0.41|0.53|13|445|466; (*GB) gi|255549898|ref|XP_002516000.1| (e_value=6e-161) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9D8Z1|ASCC1_MOUSE (e_value=5e-19) Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1;; (*TAIR) AT3G16230.2 (e_value=5e-147) | Symbols: | Predicted eukaryotic LigT | chr3:5500563-5503303 FORWARD LENGTH=449;; (*ITAG) Solyc03g120480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62916470-62924788 transcript_region:SL2.40ch03:62916470..62924788- go_terms:GO:0006265,GO:0005737,GO:0003723,GO:0005622 functional_description:"Activating signal cointegrator 1 complex subunit 1 (AHRD V1 *--- C3KHG7_ANOFI); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0006265,GO:0005737,GO:0003723,GO:0005622 NbS00028687g0017.1 protein AED:0.26 eAED:0.26 QI:164|0.5|0.42|1|0.33|0.42|7|0|373; (*GB) gi|365818555|gb|AEX00366.1| (e_value=7e-124) IAA27 [Solanum lycopersicum];; (*SWP) sp|Q9ZSY8|IAA27_ARATH (e_value=7e-73) Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1;; (*TAIR) AT4G29080.1 (e_value=6e-74) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305;; (*ITAG) Solyc03g120500.2.1 (e_value=1e-126) genomic_reference:SL2.40ch03 gene_region:62930712-62932827 transcript_region:SL2.40ch03:62930712..62932827- go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00021797g0103.1 protein AED:0.35 eAED:0.35 QI:337|1|0.66|1|1|1|3|0|459 NbS00002387g0009.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|603; (*GB) gi|255579150|ref|XP_002530422.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc04g015130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5292846-5295967 transcript_region:SL2.40ch04:5292846..5295967- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00002387g0010.1 protein AED:0.04 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|272; (*GB) gi|224089553|ref|XP_002308753.1| (e_value=4e-81) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47740.1 (e_value=9e-49) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=244;; (*ITAG) Solyc04g015120.2.1 (e_value=7e-135) genomic_reference:SL2.40ch04 gene_region:5290310-5292227 transcript_region:SL2.40ch04:5290310..5292227+ functional_description:"U-box domain containing protein expressed (AHRD V1 *--- Q10T52_ORYSJ)"; NbS00002387g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|1|0.33|0.5|4|0|289; (*GB) gi|224089553|ref|XP_002308753.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47740.1 (e_value=3e-36) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr5:19338688-19339683 FORWARD LENGTH=244;; (*ITAG) Solyc04g015120.2.1 (e_value=7e-117) genomic_reference:SL2.40ch04 gene_region:5290310-5292227 transcript_region:SL2.40ch04:5290310..5292227+ functional_description:"U-box domain containing protein expressed (AHRD V1 *--- Q10T52_ORYSJ)"; NbS00058085g0004.1 protein AED:0.13 eAED:1.00 QI:88|0|0|1|0|0|2|59|14 NbS00001427g0014.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|1010; (*GB) gi|225433686|ref|XP_002265846.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Vitis vinifera];; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G28040.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr3:10435139-10438268 FORWARD LENGTH=1016;; (*ITAG) Solyc09g098290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67431841-67435522 transcript_region:SL2.40ch09:67431841..67435522- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00001427g0013.1 protein AED:0.19 eAED:0.20 QI:0|0.5|0.42|1|0.66|0.71|7|0|373; (*GB) gi|224130352|ref|XP_002328587.1| (e_value=3e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=2e-71) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT1G70500.1 (e_value=3e-133) | Symbols: | Pectin lyase-like superfamily protein | chr1:26566579-26568729 REVERSE LENGTH=468;; (*ITAG) Solyc09g098270.2.1 (e_value=8e-163) genomic_reference:SL2.40ch09 gene_region:67421613-67424776 transcript_region:SL2.40ch09:67421613..67424776+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9SLP3_CUCSA); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00001427g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.90|0.91|0.91|0.81|0.83|12|348|336; (*GB) gi|225433688|ref|XP_002266909.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera];; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2;; (*TAIR) AT1G10840.1 (e_value=0.0) | Symbols: TIF3H1 | translation initiation factor 3 subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337;; (*ITAG) Solyc09g098280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67425417-67431175 transcript_region:SL2.40ch09:67425417..67431175+ go_terms:GO:0032403 functional_description:"Eukaryotic translation initiation factor 3 subunit 3 (AHRD V1 ***- B4FR57_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0032403 NbS00050578g0003.1 protein AED:0.06 eAED:0.06 QI:185|1|1|1|1|1|3|199|244; (*GB) gi|445113|prf||1908418A (e_value=4e-126) acid phosphatase 1;; (*SWP) sp|P27061|PPA1_SOLLC (e_value=2e-127) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=1e-96) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc06g034110.2.1 (e_value=4e-129) genomic_reference:SL2.40ch06 gene_region:20378718-20384076 transcript_region:SL2.40ch06:20378718..20384076+ go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00038458g0006.1 protein AED:0.31 eAED:0.31 QI:1155|0.25|0.4|1|0.75|0.8|5|0|368; (*GB) gi|255541240|ref|XP_002511684.1| (e_value=7e-151) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G45260.1 (e_value=2e-133) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=4e-164) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00015729g0002.1 protein AED:0.30 eAED:0.89 QI:0|0|0|1|0|0|2|0|117 NbS00019410g0001.1 protein AED:0.29 eAED:0.30 QI:351|0.57|0.75|1|0.85|0.75|8|258|326; (*GB) gi|359476007|ref|XP_002280887.2| (e_value=3e-76) PREDICTED: dehydrogenase/reductase SDR family member on chromosome X-like [Vitis vinifera];; (*TAIR) AT5G04070.1 (e_value=2e-73) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1102238-1104192 FORWARD LENGTH=359;; (*ITAG) Solyc09g010150.2.1 (e_value=7e-115) genomic_reference:SL2.40ch09 gene_region:3521393-3529854 transcript_region:SL2.40ch09:3521393..3529854+ go_terms:GO:0004745,GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LXF4_ARALY); contains Interpro domain(s) IPR002198 Short-chain dehydrogenase/reductase SDR "; GO:0004745,GO:0046983 NbS00019410g0008.1 protein AED:0.35 eAED:0.39 QI:0|0.66|0.75|1|0|0.25|4|310|114; (*GB) gi|388502212|gb|AFK39172.1| (e_value=2e-64) unknown [Lotus japonicus];; (*SWP) sp|Q9AST6|VSP55_ARATH (e_value=1e-32) Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1;; (*TAIR) AT3G11530.2 (e_value=3e-65) | Symbols: | Vacuolar protein sorting 55 (VPS55) family protein | chr3:3628801-3629885 REVERSE LENGTH=113;; (*ITAG) Solyc09g010170.2.1 (e_value=6e-71) genomic_reference:SL2.40ch09 gene_region:3548667-3552545 transcript_region:SL2.40ch09:3548667..3552545- functional_description:"Vacuolar protein sorting 55 containing protein (AHRD V1 ***- A6N1U6_ORYSI); contains Interpro domain(s) IPR007262 Vacuolar protein sorting 55 "; NbS00019410g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|349; (*GB) gi|332322090|emb|CCA65981.1| (e_value=7e-33) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=1e-12) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426;; (*ITAG) Solyc00g005980.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3916175-3916960 transcript_region:SL2.40ch00:3916175..3916960+ functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00021331g0001.1 protein AED:0.35 eAED:0.35 QI:202|0.75|0.8|1|0.75|0.8|5|0|313; (*GB) gi|222159969|gb|ACM47318.1| (e_value=1e-108) putative zinc ion binding protein [Capsicum annuum];; (*SWP) sp|Q9ZT42|RHF2A_ARATH (e_value=2e-47) E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1;; (*TAIR) AT5G22000.3 (e_value=1e-48) | Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375;; (*ITAG) Solyc06g073860.1.1 (e_value=9e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41998917-42000551 transcript_region:SL2.40ch06:41998917..42000551+ functional_description:"RING-H2 zinc finger protein (Fragment) (AHRD V1 *-*- A1IW10_9LAMI)"; NbS00021331g0012.1 protein AED:0.19 eAED:0.19 QI:79|1|0.66|1|0.6|0.83|6|304|114; (*GB) gi|255562011|ref|XP_002522014.1| (e_value=4e-70) DNA-directed RNA polymerase II, putative [Ricinus communis];; (*SWP) sp|Q9D7M8|RPB4_MOUSE (e_value=1e-21) DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2;; (*TAIR) AT5G09920.1 (e_value=1e-68) | Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 | RNA polymerase II, Rpb4, core protein | chr5:3096276-3097370 FORWARD LENGTH=138;; (*ITAG) Solyc06g073870.2.1 (e_value=5e-80) genomic_reference:SL2.40ch06 gene_region:42002858-42005584 transcript_region:SL2.40ch06:42002858..42005584- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit RPB4 (AHRD V1 **** B9EP00_SALSA); contains Interpro domain(s) IPR006590 RNA polymerase II, Rpb4, core "; GO:0003899 NbS00021331g0010.1 protein AED:0.27 eAED:0.27 QI:158|1|1|1|1|1|3|404|148; (*GB) gi|313586603|gb|ADR71312.1| (e_value=1e-82) hypothetical protein 33 [Hevea brasiliensis];; (*TAIR) AT1G08480.1 (e_value=7e-71) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2684340-2685395 FORWARD LENGTH=142;; (*ITAG) Solyc06g073900.2.1 (e_value=6e-94) genomic_reference:SL2.40ch06 gene_region:42011100-42014951 transcript_region:SL2.40ch06:42011100..42014951- functional_description:"Unknown Protein (AHRD V1)"; NbS00032448g0006.1 protein AED:0.03 eAED:0.03 QI:237|1|1|1|0.87|0.77|9|87|1076; (*GB) gi|225452142|ref|XP_002270234.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266440 [Vitis vinifera];; (*TAIR) AT3G01810.3 (e_value=5e-179) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921;; (*ITAG) Solyc03g005060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46988-52259 transcript_region:SL2.40ch03:46988..52259- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00032448g0007.1 protein AED:0.35 eAED:0.35 QI:139|1|1|1|1|0.75|4|384|283; (*GB) gi|77999238|gb|ABB16966.1| (e_value=6e-160) adenylate kinase family-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=2e-43) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT3G01820.1 (e_value=9e-76) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:293981-295357 REVERSE LENGTH=263;; (*ITAG) Solyc03g005050.2.1 (e_value=2e-159) genomic_reference:SL2.40ch03 gene_region:44287-46883 transcript_region:SL2.40ch03:44287..46883+ go_terms:GO:0006139 functional_description:"Adenylate kinase family-like protein (AHRD V1 ***- Q38JG0_SOLTU); contains Interpro domain(s) IPR000850 Adenylate kinase "; GO:0006139 NbS00057449g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|591; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=5e-177) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=5e-148) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=4e-149) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00018092g0004.1 protein AED:0.16 eAED:0.18 QI:245|0.71|0.75|1|1|1|8|0|292; (*GB) gi|365222934|gb|AEW69819.1| (e_value=5e-161) Hop-interacting protein THI129 [Solanum lycopersicum];; (*SWP) sp|Q8L7U5|BSL1_ARATH (e_value=7e-149) Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=2;; (*TAIR) AT4G03080.1 (e_value=6e-150) | Symbols: BSL1 | BRI1 suppressor 1 (BSU1)-like 1 | chr4:1359935-1365166 REVERSE LENGTH=881;; (*ITAG) Solyc09g074320.2.1 (e_value=3e-164) genomic_reference:SL2.40ch09 gene_region:61594259-61607705 transcript_region:SL2.40ch09:61594259..61607705+ go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I9Z0_POPTR); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00018092g0006.1 protein AED:0.26 eAED:0.26 QI:172|1|1|1|1|1|12|47|359; (*GB) gi|356511013|ref|XP_003524226.1| (e_value=0.0) PREDICTED: protein tas-like [Glycine max];; (*SWP) sp|P0A9T5|TAS_SHIFL (e_value=4e-85) Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1;; (*TAIR) AT1G04420.1 (e_value=8e-96) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc09g074310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61586638-61590738 transcript_region:SL2.40ch09:61586638..61590738+ go_terms:GO:0004033 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 **** Q2R0H4_ORYSJ); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0004033 NbS00002360g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|1|1|8|0|501; (*GB) gi|255541684|ref|XP_002511906.1| (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT1G01540.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:195980-198383 FORWARD LENGTH=472;; (*ITAG) Solyc01g094940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78103755-78107420 transcript_region:SL2.40ch01:78103755..78107420+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00002360g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.83|0.76|0.92|0.75|0.92|13|362|386; (*GB) gi|225454328|ref|XP_002277525.1| (e_value=0.0) PREDICTED: CAAX prenyl protease 1 homolog [Vitis vinifera];; (*SWP) sp|Q8RX88|FACE1_ARATH (e_value=0.0) CAAX prenyl protease 1 homolog OS=Arabidopsis thaliana GN=FACE1 PE=1 SV=1;; (*TAIR) AT4G01320.1 (e_value=0.0) | Symbols: ATSTE24, STE24 | Peptidase family M48 family protein | chr4:545905-549002 FORWARD LENGTH=424;; (*ITAG) Solyc01g094930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78090601-78100660 transcript_region:SL2.40ch01:78090601..78100660+ go_terms:GO:0016020 functional_description:"CAAX prenyl protease 1 (AHRD V1 ***- B4FBL0_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00019607g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|62 NbS00056459g0004.1 protein AED:0.20 eAED:0.20 QI:146|1|0.85|1|1|1|7|406|393; (*GB) gi|225454022|ref|XP_002281030.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259142 [Vitis vinifera];; (*TAIR) AT2G45320.1 (e_value=2e-180) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18684182-18686107 REVERSE LENGTH=392;; (*ITAG) Solyc08g006610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1210665-1214986 transcript_region:SL2.40ch08:1210665..1214986+ functional_description:"Os06g0571300 protein (Fragment) (AHRD V1 *-*- Q0DBE4_ORYSJ)"; NbS00014126g0105.1 protein AED:0.15 eAED:0.16 QI:224|0.84|0.66|1|0.92|0.85|27|0|1030 NbS00038117g0006.1 protein AED:0.08 eAED:0.10 QI:0|0.83|0.57|1|0.5|0.57|7|0|1465; (*GB) gi|296085997|emb|CBI31438.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6BDA0|ELF6_ARATH (e_value=0.0) Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1;; (*TAIR) AT5G04240.1 (e_value=0.0) | Symbols: ELF6 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340;; (*ITAG) Solyc04g028560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:28612676-28615872 transcript_region:SL2.40ch04:28612676..28615872- go_terms:GO:0003700 functional_description:"Zinc finger transcription factor (AHRD V1 *-** Q7K9G4_DROME); contains Interpro domain(s) IPR013087 Zinc finger, C2H2-type/integrase, DNA-binding "; GO:0003700 NbS00038117g0005.1 protein AED:0.48 eAED:0.70 QI:0|0|0|0.66|1|1|3|0|73 NbS00026008g0003.1 protein AED:0.26 eAED:0.26 QI:130|1|1|1|1|1|6|514|394; (*GB) gi|164459314|gb|ABY57764.1| (e_value=0.0) extracellular Ca2+ sensing receptor [Nicotiana tabacum];; (*SWP) sp|Q9FN48|CAS_ARATH (e_value=2e-174) Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT5G23060.1 (e_value=2e-175) | Symbols: CaS | calcium sensing receptor | chr5:7736760-7738412 REVERSE LENGTH=387;; (*ITAG) Solyc03g114450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58501298-58504565 transcript_region:SL2.40ch03:58501298..58504565+ functional_description:"Extracellular calcium sensing receptor (AHRD V1 ***- C7BCU7_LIQFO); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00039554g0002.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.16|1|1|1|6|0|334; (*GB) gi|225448176|ref|XP_002266061.1| (e_value=2e-98) PREDICTED: uncharacterized membrane protein At4g06598 [Vitis vinifera];; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=3e-34) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G58110.2 (e_value=2e-59) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=6e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00018718g0001.1 protein AED:0.17 eAED:0.17 QI:494|0.71|0.5|1|0.71|0.62|8|0|825; (*GB) gi|225432728|ref|XP_002282919.1| (e_value=0.0) PREDICTED: probable RNA helicase SDE3 [Vitis vinifera];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=0.0) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=0.0) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00018718g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.25|0|0.8|0.5|0.6|5|0|294; (*GB) gi|351727671|ref|NP_001235889.1| (e_value=1e-37) uncharacterized protein LOC100500289 precursor [Glycine max];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=2e-12) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=2e-29) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc06g054070.2.1 (e_value=1e-56) genomic_reference:SL2.40ch06 gene_region:33408127-33408933 transcript_region:SL2.40ch06:33408127..33408933+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- C6T196_SOYBN); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00018718g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.25|1|0.66|0.75|4|0|228; (*GB) gi|356534201|ref|XP_003535646.1| (e_value=6e-45) PREDICTED: non-specific lipid-transfer protein-like protein At2g13820-like [Glycine max];; (*TAIR) AT1G05450.2 (e_value=2e-33) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:1600004-1601086 FORWARD LENGTH=205;; (*ITAG) Solyc06g054030.2.1 (e_value=5e-73) genomic_reference:SL2.40ch06 gene_region:33389461-33390372 transcript_region:SL2.40ch06:33389461..33390372- functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00051234g0004.1 protein AED:0.15 eAED:0.15 QI:230|0.90|0.83|1|1|1|12|0|389; (*GB) gi|225432498|ref|XP_002277442.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257995 [Vitis vinifera];; (*SWP) sp|P54567|YQKD_BACSU (e_value=9e-14) Uncharacterized protein yqkD OS=Bacillus subtilis (strain 168) GN=yqkD PE=4 SV=1;; (*TAIR) AT4G14290.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:8225547-8230057 REVERSE LENGTH=558;; (*ITAG) Solyc01g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72007308-72026968 transcript_region:SL2.40ch01:72007308..72026968- functional_description:"Alpha/beta hydrolase (AHRD V1 *--- C4IIG9_CLOBU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00050693g0001.1 protein AED:0.01 eAED:0.01 QI:429|1|1|1|0.75|0.6|5|603|388; (*GB) gi|224109644|ref|XP_002315265.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=0.0) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00004694g0008.1 protein AED:0.26 eAED:0.26 QI:112|0.94|0.78|1|0.88|0.84|19|0|918; (*GB) gi|351721667|ref|NP_001237473.1| (e_value=0.0) aspartokinase-homoserine dehydrogenase [Glycine max];; (*SWP) sp|P37142|AKH_DAUCA (e_value=0.0) Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1;; (*TAIR) AT4G19710.2 (e_value=0.0) | Symbols: AK-HSDH II, AK-HSDH | aspartate kinase-homoserine dehydrogenase ii | chr4:10725229-10729536 FORWARD LENGTH=916;; (*ITAG) Solyc06g064550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36609568-36619733 transcript_region:SL2.40ch06:36609568..36619733+ go_terms:GO:0004072,GO:0004412 functional_description:"Aspartokinase-homoserine dehydrogenase (AHRD V1 **** O63067_SOYBN); contains Interpro domain(s) IPR001341 Aspartate kinase region "; GO:0004072,GO:0004412 NbS00025811g0001.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|338190111|gb|AEI84329.1| (e_value=2e-75) lectin-domain receptor-like kinase [Nicotiana attenuata];; (*SWP) sp|Q39688|EP1G_DAUCA (e_value=4e-12) Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1;; (*TAIR) AT1G78860.1 (e_value=5e-15) | Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr1:29646168-29647499 REVERSE LENGTH=443;; (*ITAG) Solyc07g055690.1.1 (e_value=3e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60956155-60957501 transcript_region:SL2.40ch07:60956155..60957501- go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein S6 (AHRD V1 **-- SLSG6_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00025811g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|175; (*GB) gi|338190111|gb|AEI84329.1| (e_value=1e-87) lectin-domain receptor-like kinase [Nicotiana attenuata];; (*ITAG) Solyc07g055690.1.1 (e_value=2e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60956155-60957501 transcript_region:SL2.40ch07:60956155..60957501- go_terms:GO:0005529 functional_description:"S-locus-specific glycoprotein S6 (AHRD V1 **-- SLSG6_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00046245g0001.1 protein AED:0.29 eAED:0.48 QI:0|0|0.5|1|0|0|2|442|69 NbS00022614g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0|1|1|1|2|0|204; (*GB) gi|224092444|ref|XP_002309613.1| (e_value=3e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11280.1 (e_value=9e-90) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3597321-3598347 FORWARD LENGTH=209;; (*ITAG) Solyc03g116470.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59937028-59938028 transcript_region:SL2.40ch03:59937028..59938028- functional_description:"Unknown Protein (AHRD V1)"; NbS00024092g0008.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|0|0.5|2|196|182; (*GB) gi|319433439|gb|ADV57637.1| (e_value=1e-49) copper binding protein 2 [Gossypium hirsutum];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=4e-14) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT3G27200.1 (e_value=2e-20) | Symbols: | Cupredoxin superfamily protein | chr3:10043738-10044340 REVERSE LENGTH=174;; (*ITAG) Solyc11g012130.1.1 (e_value=1e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5057082-5059179 transcript_region:SL2.40ch11:5057082..5059179+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00024092g0009.1 protein AED:0.12 eAED:0.15 QI:0|0.86|0.79|1|0.86|0.95|24|297|1193; (*GB) gi|225433841|ref|XP_002263182.1| (e_value=0.0) PREDICTED: isoleucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q54YD4|SYIC_DICDI (e_value=0.0) Probable isoleucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=ileS PE=3 SV=1;; (*TAIR) AT4G10320.1 (e_value=0.0) | Symbols: | tRNA synthetase class I (I, L, M and V) family protein | chr4:6397526-6404509 REVERSE LENGTH=1190;; (*ITAG) Solyc11g012140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5060237-5076822 transcript_region:SL2.40ch11:5060237..5076822- go_terms:GO:0005737 functional_description:"Isoleucyl-tRNA synthetase (AHRD V1 ***- Q6PGU7_DANRE); contains Interpro domain(s) IPR002300 Aminoacyl-tRNA synthetase, class Ia IPR002301 Isoleucyl-tRNA synthetase, class Ia IPR018353 Isoleucyl-tRNA synthetase "; GO:0005737 NbS00019519g0003.1 protein AED:0.17 eAED:0.17 QI:32|0.87|1|1|1|1|9|507|372; (*GB) gi|356550390|ref|XP_003543570.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100817202 [Glycine max];; (*TAIR) AT2G19160.1 (e_value=5e-173) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr2:8310921-8313595 FORWARD LENGTH=394;; (*ITAG) Solyc07g008940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3946263-3952169 transcript_region:SL2.40ch07:3946263..3952169- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00005165g0004.1 protein AED:0.08 eAED:0.08 QI:572|1|0.85|1|0.66|0.57|7|0|760; (*GB) gi|73624749|gb|AAZ79232.1| (e_value=0.0) putative xylanase Xyn1 [Nicotiana tabacum];; (*SWP) sp|P36917|XYNA_THESA (e_value=2e-35) Endo-1,4-beta-xylanase A OS=Thermoanaerobacter saccharolyticum GN=xynA PE=1 SV=1;; (*TAIR) AT1G58370.1 (e_value=0.0) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc12g088210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62093027-62098315 transcript_region:SL2.40ch12:62093027..62098315+ go_terms:GO:0016798,GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016798,GO:0005975 NbS00005165g0001.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|359492540|ref|XP_003634427.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100854033 [Vitis vinifera];; (*ITAG) Solyc12g088300.1.1 (e_value=5e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:62183704-62185290 transcript_region:SL2.40ch12:62183704..62185290- functional_description:"Unknown Protein (AHRD V1)"; NbS00005165g0011.1 protein AED:0.29 eAED:0.29 QI:245|1|1|1|1|1|11|359|818; (*GB) gi|359491950|ref|XP_003634345.1| (e_value=0.0) PREDICTED: cirhin-like [Vitis vinifera];; (*SWP) sp|Q969X6|CIR1A_HUMAN (e_value=5e-47) Cirhin OS=Homo sapiens GN=CIRH1A PE=1 SV=1;; (*TAIR) AT4G07410.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:4201465-4205136 REVERSE LENGTH=815;; (*ITAG) Solyc12g088290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62172387-62180578 transcript_region:SL2.40ch12:62172387..62180578+ functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00010629g0007.1 protein AED:0.23 eAED:0.23 QI:322|1|1|1|0.66|0.71|7|250|194; (*GB) gi|225445842|ref|XP_002277907.1| (e_value=4e-71) PREDICTED: UPF0133 protein Synpcc7942_0464 [Vitis vinifera];; (*SWP) sp|Q8GMT0|Y464_SYNE7 (e_value=2e-20) UPF0133 protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2;; (*TAIR) AT4G30620.1 (e_value=1e-70) | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr4:14948724-14950035 REVERSE LENGTH=180;; (*ITAG) Solyc08g006780.2.1 (e_value=8e-96) genomic_reference:SL2.40ch08 gene_region:1340597-1346293 transcript_region:SL2.40ch08:1340597..1346293+ functional_description:"Complex interacting protein 9 (AHRD V1 ***- Q8LDX3_ARATH); contains Interpro domain(s) IPR004401 Uncharacterised protein family UPF0133 "; NbS00010629g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|47|206; (*GB) gi|6855476|dbj|BAA90481.1| (e_value=6e-68) phytocyanin-related protein [Ipomoea nil];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-43) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT4G31840.1 (e_value=1e-49) | Symbols: ENODL15, AtENODL15 | early nodulin-like protein 15 | chr4:15401798-15402426 FORWARD LENGTH=177;; (*ITAG) Solyc08g006790.2.1 (e_value=1e-86) genomic_reference:SL2.40ch08 gene_region:1346646-1348052 transcript_region:SL2.40ch08:1346646..1348052- go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00018275g0001.1 protein AED:0.29 eAED:0.86 QI:0|1|0.5|1|0|0|2|109|455; (*GB) gi|255561699|ref|XP_002521859.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19120.1 (e_value=0.0) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:6609678-6611018 REVERSE LENGTH=446;; (*ITAG) Solyc07g040960.1.1 (e_value=7e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00003910g0012.1 protein AED:0.13 eAED:0.13 QI:403|1|1|1|0.9|0.90|11|332|760; (*GB) gi|255575263|ref|XP_002528535.1| (e_value=0.0) Cucumisin precursor, putative [Ricinus communis];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-176) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G10520.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr4:6499794-6502866 FORWARD LENGTH=756;; (*ITAG) Solyc02g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32840326-32844503 transcript_region:SL2.40ch02:32840326..32844503+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* C3VDI0_CARPA); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00003910g0013.1 protein AED:0.46 eAED:0.59 QI:9|0.5|0|1|0.5|0.66|3|0|97 NbS00003910g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|299; (*GB) gi|224056731|ref|XP_002298995.1| (e_value=3e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPU9|VITH1_ARATH (e_value=1e-22) Vacuolar iron transporter homolog 1 OS=Arabidopsis thaliana GN=At1g21140 PE=2 SV=1;; (*TAIR) AT1G21140.1 (e_value=1e-23) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr1:7404464-7405066 FORWARD LENGTH=200;; (*ITAG) Solyc02g068260.1.1 (e_value=5e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32824828-32825673 transcript_region:SL2.40ch02:32824828..32825673- functional_description:"Integral membrane protein (AHRD V1 *-*- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00003910g0001.1 protein AED:0.36 eAED:0.36 QI:78|1|0.5|1|0|0.5|2|0|147; (*GB) gi|225431642|ref|XP_002263266.1| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100241316 [Vitis vinifera];; (*TAIR) AT3G51500.1 (e_value=7e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19108353-19108703 FORWARD LENGTH=116;; (*ITAG) Solyc02g068290.1.1 (e_value=4e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32844801-32845202 transcript_region:SL2.40ch02:32844801..32845202- functional_description:"Unknown Protein (AHRD V1)"; NbS00003910g0014.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|174; (*GB) gi|225431386|ref|XP_002279284.1| (e_value=9e-61) PREDICTED: uncharacterized protein LOC100266100 [Vitis vinifera];; (*TAIR) AT3G51510.1 (e_value=1e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:19109118-19109842 FORWARD LENGTH=181;; (*ITAG) Solyc02g068270.2.1 (e_value=3e-84) genomic_reference:SL2.40ch02 gene_region:32826573-32829585 transcript_region:SL2.40ch02:32826573..32829585- functional_description:"Unknown Protein (AHRD V1)"; NbS00003910g0018.1 protein AED:0.82 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|96 NbS00007984g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.85|1|1|1|7|0|429; (*GB) gi|350536037|ref|NP_001234738.1| (e_value=0.0) PYD1A protein [Solanum lycopersicum];; (*SWP) sp|P25889|PREA_ECOLI (e_value=9e-82) NAD-dependent dihydropyrimidine dehydrogenase subunit PreA OS=Escherichia coli (strain K12) GN=preA PE=1 SV=3;; (*TAIR) AT3G17810.1 (e_value=0.0) | Symbols: PYD1 | pyrimidine 1 | chr3:6094279-6096289 FORWARD LENGTH=426;; (*ITAG) Solyc03g097910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53734853-53738896 transcript_region:SL2.40ch03:53734853..53738896- go_terms:GO:0017113 functional_description:"Dihydroorotate dehydrogenase family protein (AHRD V1 **** D7L7W7_ARALY); contains Interpro domain(s) IPR005720 Dihydroorotate dehydrogenase, class 1, core "; GO:0017113 NbS00008730g0007.1 protein AED:0.16 eAED:0.16 QI:219|0.6|0.5|1|1|1|6|0|259; (*GB) gi|193290676|gb|ACF17646.1| (e_value=4e-170) putative caffeoyl-CoA 3-O-methyltransferase [Capsicum annuum];; (*SWP) sp|Q42945|CAMT6_TOBAC (e_value=2e-171) Caffeoyl-CoA O-methyltransferase 6 OS=Nicotiana tabacum GN=CCOAOMT6 PE=2 SV=1;; (*TAIR) AT4G34050.1 (e_value=1e-155) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc01g107910.2.1 (e_value=1e-167) genomic_reference:SL2.40ch01 gene_region:87057221-87058641 transcript_region:SL2.40ch01:87057221..87058641- go_terms:GO:0042409 functional_description:"Caffeoyl CoA 3-O-methyltransferase (AHRD V1 **** Q5I2D1_9ROSI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00008730g0101.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|418 NbS00008730g0216.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|0.5|0.33|3|62|309 NbS00008730g0202.1 protein AED:0.27 eAED:0.27 QI:319|0.75|0.8|1|0.75|0.6|5|0|696 NbS00008730g0217.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|0.8|0.66|0.4|10|0|459 NbS00008730g0205.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|416 NbS00031315g0003.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|1|2|0|308; (*GB) gi|161334558|gb|ABX60975.1| (e_value=0.0) TPK1 [Nicotiana tabacum];; (*SWP) sp|Q9SVV6|TPK3_ARATH (e_value=8e-137) Two-pore potassium channel 3 OS=Arabidopsis thaliana GN=TPK3 PE=2 SV=1;; (*TAIR) AT4G18160.1 (e_value=6e-138) | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated outward rectifying K+ channel 6 | chr4:10055696-10057546 FORWARD LENGTH=436;; (*ITAG) Solyc02g071140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35206691-35213915 transcript_region:SL2.40ch02:35206691..35213915- go_terms:GO:0015271 functional_description:"Outward rectifying potassium channel (AHRD V1 **** B9I109_POPTR); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271 NbS00007199g0005.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|1|1|1|3|0|141; (*GB) gi|297733891|emb|CBI15138.3| (e_value=1e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G07950.1 (e_value=6e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540530-2542047 REVERSE LENGTH=303;; (*ITAG) Solyc06g069510.2.1 (e_value=6e-72) genomic_reference:SL2.40ch06 gene_region:39676146-39681903 transcript_region:SL2.40ch06:39676146..39681903- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 ***- Q9SD89_ARATH)"; NbS00007199g0004.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.33|0|0.33|3|0|188; (*ITAG) Solyc06g069530.2.1 (e_value=8e-16) genomic_reference:SL2.40ch06 gene_region:39686045-39688714 transcript_region:SL2.40ch06:39686045..39688714- go_terms:GO:0003989,GO:0004642 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** Q7NZD6_CHRVO); contains Interpro domain(s) IPR001249 Acetyl-CoA biotin carboxyl carrier "; GO:0003989,GO:0004642 NbS00002057g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|310; (*GB) gi|147792168|emb|CAN77499.1| (e_value=7e-90) hypothetical protein VITISV_002404 [Vitis vinifera];; (*TAIR) AT1G07730.2 (e_value=3e-86) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:2397527-2398696 REVERSE LENGTH=389;; (*ITAG) Solyc06g075630.2.1 (e_value=3e-137) genomic_reference:SL2.40ch06 gene_region:43397564-43399083 transcript_region:SL2.40ch06:43397564..43399083- functional_description:"Dirigent-like protein (AHRD V1 ***- B6TVE6_MAIZE); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00002057g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|5|135|594; (*GB) gi|224061607|ref|XP_002300564.1| (e_value=1e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT4G20900.1 (e_value=7e-93) | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11184103-11185844 REVERSE LENGTH=450;; (*ITAG) Solyc06g075640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43400106-43403274 transcript_region:SL2.40ch06:43400106..43403274+ go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *--- B1Q393_BRAOT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00002057g0008.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|252; (*GB) gi|351722853|ref|NP_001238026.1| (e_value=2e-139) nodulin-26 [Glycine max];; (*SWP) sp|O82598|TIP13_ARATH (e_value=1e-130) Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1;; (*TAIR) AT4G01470.1 (e_value=8e-132) | Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 | tonoplast intrinsic protein 1;3 | chr4:625092-625850 REVERSE LENGTH=252;; (*ITAG) Solyc06g075650.2.1 (e_value=1e-152) genomic_reference:SL2.40ch06 gene_region:43405284-43406388 transcript_region:SL2.40ch06:43405284..43406388+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- D6BRE1_9ROSI); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00007548g0004.1 protein AED:0.30 eAED:0.30 QI:435|0.5|0.66|1|0.5|0.33|3|146|58 NbS00033135g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|0.5|1|1|2|0|187; (*GB) gi|224093184|ref|XP_002309823.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43235.1 (e_value=1e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17968910-17970822 REVERSE LENGTH=437;; (*ITAG) Solyc09g098530.2.1 (e_value=2e-78) genomic_reference:SL2.40ch09 gene_region:67604986-67611760 transcript_region:SL2.40ch09:67604986..67611760+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033135g0001.1 protein AED:0.31 eAED:0.31 QI:418|0.75|0.84|1|0.83|0.69|13|461|323; (*GB) gi|359478080|ref|XP_003632066.1| (e_value=0.0) PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Vitis vinifera];; (*SWP) sp|Q8GY97|CSTR2_ARATH (e_value=1e-176) CMP-sialic acid transporter 2 OS=Arabidopsis thaliana GN=At2g43240 PE=2 SV=1;; (*TAIR) AT2G43240.1 (e_value=1e-177) | Symbols: | Nucleotide-sugar transporter family protein | chr2:17971280-17975300 REVERSE LENGTH=406;; (*ITAG) Solyc09g098520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67591633-67604989 transcript_region:SL2.40ch09:67591633..67604989+ go_terms:GO:0005338 functional_description:"Nucleotide-sugar transporter UDP N-acetylglucosamine-like signal peptide 9 or more transmembrane domains (Fragment) (AHRD V1 *-** Q5CU24_CRYPV); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005338 NbS00033463g0004.1 protein AED:0.66 eAED:0.87 QI:0|0|0|0.8|1|1|5|0|219 NbS00036982g0001.1 protein AED:0.09 eAED:0.09 QI:246|1|1|1|0.57|0.37|8|182|381; (*GB) gi|359480559|ref|XP_003632492.1| (e_value=8e-152) PREDICTED: BTB/POZ and TAZ domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q9FJX5|BT4_ARATH (e_value=7e-137) BTB/POZ and TAZ domain-containing protein 4 OS=Arabidopsis thaliana GN=BT4 PE=1 SV=1;; (*TAIR) AT5G67480.1 (e_value=5e-138) | Symbols: BT4, ATBT4 | BTB and TAZ domain protein 4 | chr5:26931055-26932496 REVERSE LENGTH=372;; (*ITAG) Solyc02g092460.2.1 (e_value=1e-170) genomic_reference:SL2.40ch02 gene_region:48088459-48090055 transcript_region:SL2.40ch02:48088459..48090055+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- B5X432_SALSA); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00010264g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|284; (*GB) gi|129560505|dbj|BAF48803.1| (e_value=1e-130) wound-responsive AP2 like factor 1 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=3e-31) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=2e-32) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc01g108240.2.1 (e_value=8e-93) genomic_reference:SL2.40ch01 gene_region:87368287-87369574 transcript_region:SL2.40ch01:87368287..87369574+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00010264g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|1|2|0|641; (*GB) gi|37223342|gb|AAQ90244.1| (e_value=0.0) DEM2 [Solanum lycopersicum];; (*SWP) sp|P40781|CYPR4_CYNCA (e_value=0.0) Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1;; (*TAIR) AT3G19240.1 (e_value=0.0) | Symbols: | Vacuolar import/degradation, Vid27-related protein | chr3:6664383-6666423 FORWARD LENGTH=648;; (*ITAG) Solyc01g108250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87382869-87386126 transcript_region:SL2.40ch01:87382869..87386126+ functional_description:"Vacuolar import and degradation protein VID27 (AHRD V1 *--- B3LP56_YEAS1); contains Interpro domain(s) IPR013863 Vacuolar import and degradation, Vid27-related "; NbS00018534g0011.1 protein AED:0.11 eAED:0.12 QI:0|1|0.75|1|1|1|4|0|395; (*GB) gi|13123657|gb|AAK12935.1|AF323103_1 (e_value=2e-137) phosphatase-like protein Mtc923 [Medicago truncatula];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=3e-111) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=3e-120) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc07g049260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56851098-56854907 transcript_region:SL2.40ch07:56851098..56854907- go_terms:GO:0043130 functional_description:"UBX domain-containing protein 1 (AHRD V1 **-- C8V7E9_EMENI); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00018534g0017.1 protein AED:0.13 eAED:0.13 QI:214|0.84|1|1|0.69|0.78|14|530|326; (*GB) gi|224115922|ref|XP_002317160.1| (e_value=3e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41141|PFPB_RICCO (e_value=5e-153) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1;; (*TAIR) AT1G12000.1 (e_value=3e-149) | Symbols: | Phosphofructokinase family protein | chr1:4050159-4053727 REVERSE LENGTH=566;; (*ITAG) Solyc07g049280.2.1 (e_value=4e-179) genomic_reference:SL2.40ch07 gene_region:56858846-56866428 transcript_region:SL2.40ch07:56858846..56866428- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D0TAW1_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00018534g0010.1 protein AED:0.24 eAED:0.24 QI:51|1|1|1|1|1|4|343|135; (*GB) gi|255568699|ref|XP_002525321.1| (e_value=5e-56) glycine-rich RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=8e-22) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT3G08000.1 (e_value=9e-45) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2555034-2555829 REVERSE LENGTH=143;; (*ITAG) Solyc07g049270.2.1 (e_value=4e-72) genomic_reference:SL2.40ch07 gene_region:56856850-56858387 transcript_region:SL2.40ch07:56856850..56858387- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00018534g0012.1 protein AED:0.13 eAED:0.13 QI:276|1|0.8|1|0.25|0.6|5|1082|216; (*GB) gi|225447109|ref|XP_002273680.1| (e_value=6e-147) PREDICTED: BAH and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera];; (*TAIR) AT4G22140.2 (e_value=3e-135) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc07g049210.2.1 (e_value=4e-155) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00013637g0011.1 protein AED:0.22 eAED:0.19 QI:131|0.88|0.7|0.9|0.88|0.9|10|0|413; (*GB) gi|224068394|ref|XP_002302735.1| (e_value=4e-165) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2YDC9|PDCD2_BOVIN (e_value=2e-64) Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1;; (*TAIR) AT4G02220.1 (e_value=4e-149) | Symbols: | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418;; (*ITAG) Solyc08g076440.2.1 (e_value=9e-130) genomic_reference:SL2.40ch08 gene_region:57613660-57618139 transcript_region:SL2.40ch08:57613660..57618139+ go_terms:GO:0005515 functional_description:"Programmed cell death protein 2 (AHRD V1 ***- B6TEZ7_MAIZE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0005515 NbS00013637g0008.1 protein AED:0.27 eAED:0.28 QI:0|0.66|0.28|1|0.66|0.71|7|0|289; (*GB) gi|363814414|ref|NP_001242844.1| (e_value=4e-110) uncharacterized protein LOC100791538 [Glycine max];; (*SWP) sp|Q9FVR6|Y1222_ARATH (e_value=9e-98) Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1;; (*TAIR) AT1G32220.1 (e_value=7e-99) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:11608038-11609591 FORWARD LENGTH=296;; (*ITAG) Solyc08g076450.2.1 (e_value=3e-125) genomic_reference:SL2.40ch08 gene_region:57621720-57626642 transcript_region:SL2.40ch08:57621720..57626642- go_terms:GO:0044237,GO:0008152 functional_description:"3-beta hydroxysteroid dehydrogenase/isomerase family protein (AHRD V1 **-- B6TV09_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00024148g0013.1 protein AED:0.00 eAED:0.03 QI:0|0|0|1|1|1|2|0|1059; (*GB) gi|17064774|gb|AAL32541.1| (e_value=0.0) Unknown protein [Arabidopsis thaliana];; (*SWP) sp|Q8W4N3|UBP2_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2;; (*TAIR) AT1G04860.1 (e_value=0.0) | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease 2 | chr1:1369306-1372290 REVERSE LENGTH=961;; (*ITAG) Solyc09g091930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66480425-66485545 transcript_region:SL2.40ch09:66480425..66485545- go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-** B9GFW8_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00024148g0011.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|185; (*GB) gi|225433524|ref|XP_002267551.1| (e_value=5e-36) PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 2 [Vitis vinifera];; (*SWP) sp|Q8VYE5|E1312_ARATH (e_value=2e-15) Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1;; (*TAIR) AT4G13600.1 (e_value=1e-32) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr4:7911179-7912892 REVERSE LENGTH=231;; (*ITAG) Solyc09g091920.2.1 (e_value=7e-45) genomic_reference:SL2.40ch09 gene_region:66475576-66478070 transcript_region:SL2.40ch09:66475576..66478070- functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00024148g0012.1 protein AED:0.06 eAED:0.06 QI:0|1|0.85|1|0.83|1|7|0|552; (*GB) gi|145839433|gb|ABP96799.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SFU3|PPA15_ARATH (e_value=0.0) Purple acid phosphatase 15 OS=Arabidopsis thaliana GN=PAP15 PE=1 SV=1;; (*TAIR) AT3G07130.1 (e_value=0.0) | Symbols: ATPAP15, PAP15 | purple acid phosphatase 15 | chr3:2255763-2257981 REVERSE LENGTH=532;; (*ITAG) Solyc09g091910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66470168-66474547 transcript_region:SL2.40ch09:66470168..66474547+ go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** A5YBN1_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00032406g0004.1 protein AED:0.38 eAED:0.45 QI:25|0.33|0.25|0.75|0.66|0.75|4|0|76 NbS00032406g0003.1 protein AED:0.51 eAED:0.51 QI:10|1|0|1|1|1|2|0|53 NbS00015420g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.62|1|1|1|8|0|835; (*GB) gi|27529836|dbj|BAC53933.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT2G42320.2 (e_value=0.0) | Symbols: | nucleolar protein gar2-related | chr2:17628102-17630657 FORWARD LENGTH=669;; (*ITAG) Solyc03g051790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:18795546-18800624 transcript_region:SL2.40ch03:18795546..18800624+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00015420g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.6|0.8|1|0.6|5|0|183; (*GB) gi|255560215|ref|XP_002521125.1| (e_value=1e-119) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q8NJS1|ATG26_LEPMC (e_value=1e-27) Sterol 3-beta-glucosyltransferase OS=Leptosphaeria maculans GN=ATG26 PE=3 SV=1;; (*TAIR) AT3G07020.1 (e_value=5e-113) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2217841-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc06g007980.2.1 (e_value=2e-123) genomic_reference:SL2.40ch06 gene_region:1835086-1845250 transcript_region:SL2.40ch06:1835086..1845250+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00036785g0006.1 protein AED:0.27 eAED:0.32 QI:267|0.88|0.8|1|0.77|0.6|10|263|336; (*GB) gi|356572914|ref|XP_003554610.1| (e_value=0.0) PREDICTED: uncharacterized protein At1g09340, chloroplastic-like [Glycine max];; (*SWP) sp|Q9SA52|CP41B_ARATH (e_value=0.0) Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1;; (*TAIR) AT1G09340.1 (e_value=0.0) | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding | chr1:3015473-3018035 FORWARD LENGTH=378;; (*ITAG) Solyc06g073260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41530107-41533923 transcript_region:SL2.40ch06:41530107..41533923- go_terms:GO:0008266,GO:0003729 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- C7QWY4_CYAP0); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008266,GO:0003729 NbS00003600g0001.1 protein AED:0.22 eAED:0.22 QI:200|0.83|0.76|1|0.95|0.92|25|0|831; (*GB) gi|224127228|ref|XP_002320019.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O75400|PR40A_HUMAN (e_value=5e-32) Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2;; (*TAIR) AT1G44910.2 (e_value=5e-128) | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | chr1:16975930-16982647 FORWARD LENGTH=926;; (*ITAG) Solyc07g022760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:21372129-21404998 transcript_region:SL2.40ch07:21372129..21404998- go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_MOUSE); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00045716g0014.1 protein AED:0.10 eAED:0.10 QI:224|1|1|1|0.94|0.94|18|861|573; (*GB) gi|147856500|emb|CAN78641.1| (e_value=0.0) hypothetical protein VITISV_031740 [Vitis vinifera];; (*SWP) sp|Q93ZM7|CH60C_ARATH (e_value=0.0) Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2;; (*TAIR) AT3G13860.1 (e_value=0.0) | Symbols: HSP60-3A | heat shock protein 60-3A | chr3:4561704-4565133 REVERSE LENGTH=572;; (*ITAG) Solyc03g121640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63788759-63796170 transcript_region:SL2.40ch03:63788759..63796170+ go_terms:GO:0005524,GO:0005507 functional_description:"chaperonin (AHRD V1 ***- D3NRF5_AZOS1); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0005524,GO:0005507 NbS00045716g0010.1 protein AED:0.10 eAED:0.10 QI:1392|0.8|0.66|1|0.8|0.66|6|293|267; (*GB) gi|255543180|ref|XP_002512653.1| (e_value=3e-19) hypothetical protein RCOM_1438010 [Ricinus communis];; (*TAIR) AT3G62300.2 (e_value=2e-16) | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 | chr3:23054247-23057081 FORWARD LENGTH=723;; (*ITAG) Solyc03g121650.2.1 (e_value=9e-64) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00045716g0012.1 protein AED:0.32 eAED:0.35 QI:0|0.66|0.42|1|0.83|0.85|7|0|650; (*GB) gi|297744010|emb|CBI36980.3| (e_value=5e-13) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G09320.1 (e_value=6e-11) | Symbols: | agenet domain-containing protein | chr1:3010270-3012228 REVERSE LENGTH=517;; (*ITAG) Solyc03g121650.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00017103g0005.1 protein AED:0.22 eAED:0.22 QI:119|0.83|0.84|1|0.66|0.69|13|435|459; (*GB) gi|359476844|ref|XP_003631898.1| (e_value=0.0) PREDICTED: probable serine protease EDA2-like [Vitis vinifera];; (*SWP) sp|Q1PF50|EDA2_ARATH (e_value=0.0) Probable serine protease EDA2 OS=Arabidopsis thaliana GN=EDA2 PE=2 SV=2;; (*TAIR) AT4G36195.3 (e_value=0.0) | Symbols: | Serine carboxypeptidase S28 family protein | chr4:17127202-17129787 FORWARD LENGTH=488;; (*ITAG) Solyc03g033620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9480412-9491781 transcript_region:SL2.40ch03:9480412..9491781+ go_terms:GO:0004185 functional_description:"Serine carboxypeptidase S28 family protein (AHRD V1 **-* D7MBN8_ARALY); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00012887g0002.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|294; (*GB) gi|225453529|ref|XP_002278670.1| (e_value=4e-34) PREDICTED: zinc finger protein ZAT9-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9M202|ZAT9_ARATH (e_value=3e-19) Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1;; (*TAIR) AT3G60580.1 (e_value=2e-20) | Symbols: | C2H2-like zinc finger protein | chr3:22394007-22394873 FORWARD LENGTH=288;; (*ITAG) Solyc08g078590.1.1 (e_value=8e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59532391-59533236 transcript_region:SL2.40ch08:59532391..59533236- go_terms:GO:0005622 functional_description:"Zinc finger protein-like (AHRD V1 *-*- Q9M202_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00012887g0001.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|2|0|263; (*GB) gi|1786138|dbj|BAA19112.1| (e_value=3e-59) PEThy;ZPT3-1 [Petunia x hybrida];; (*ITAG) Solyc06g005180.1.1 (e_value=3e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:198092-199318 transcript_region:SL2.40ch06:198092..199318- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MD22_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00028535g0004.1 protein AED:0.40 eAED:0.51 QI:0|0.5|0.33|1|1|1|3|0|111; (*GB) gi|119367477|gb|ABL67654.1| (e_value=2e-51) putative H-type thioredoxin [Citrus hybrid cultivar];; (*SWP) sp|Q43636|TRXH_RICCO (e_value=1e-51) Thioredoxin H-type OS=Ricinus communis PE=3 SV=1;; (*TAIR) AT3G51030.1 (e_value=1e-47) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc02g084710.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:42394410-42396096 transcript_region:SL2.40ch02:42394410..42396096+ go_terms:GO:0045454 functional_description:"Thioredoxin h1 (AHRD V1 ***- A8HTK0_SOYBN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00026097g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|3|0|427; (*GB) gi|359479301|ref|XP_002266911.2| (e_value=2e-160) PREDICTED: scarecrow-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q9LPR8|SCL3_ARATH (e_value=1e-139) Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1;; (*TAIR) AT1G50420.1 (e_value=8e-141) | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482;; (*ITAG) Solyc12g099900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65187350-65188756 transcript_region:SL2.40ch12:65187350..65188756+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B9NHP2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00026097g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|193; (*ITAG) Solyc11g065520.1.1 (e_value=9e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00002065g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|384; (*GB) gi|225460662|ref|XP_002267096.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257198 isoform 1 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=3e-160) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc12g056550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47861646-47862782 transcript_region:SL2.40ch12:47861646..47862782+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00002065g0010.1 protein AED:0.23 eAED:0.23 QI:197|1|1|1|0|0.5|2|227|148; (*GB) gi|255566608|ref|XP_002524288.1| (e_value=6e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G76770.1 (e_value=4e-20) | Symbols: | HSP20-like chaperones superfamily protein | chr1:28813569-28814378 FORWARD LENGTH=244;; (*ITAG) Solyc04g071490.2.1 (e_value=7e-38) genomic_reference:SL2.40ch04 gene_region:56070977-56072202 transcript_region:SL2.40ch04:56070977..56072202+ functional_description:"Cell envelope integrity inner membrane protein TolA (AHRD V1 *-*- B6TVC4_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00033802g0003.1 protein AED:0.29 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|257; (*GB) gi|356515955|ref|XP_003526662.1| (e_value=4e-14) PREDICTED: uncharacterized protein LOC100796235 [Glycine max];; (*TAIR) AT1G76980.1 (e_value=1e-12) | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28926466-28927242 REVERSE LENGTH=258;; (*ITAG) Solyc08g080860.2.1 (e_value=1e-59) genomic_reference:SL2.40ch08 gene_region:61208256-61210051 transcript_region:SL2.40ch08:61208256..61210051- functional_description:"Unknown Protein (AHRD V1)"; NbS00033802g0004.1 protein AED:0.11 eAED:0.12 QI:127|0.90|0.83|1|0.81|0.91|12|0|592; (*GB) gi|45476407|dbj|BAD12556.1| (e_value=0.0) RIO kinase [Nicotiana tabacum];; (*SWP) sp|Q54VD8|RIO1_DICDI (e_value=1e-136) Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum GN=rio1 PE=3 SV=1;; (*TAIR) AT5G37350.1 (e_value=0.0) | Symbols: | Serine/threonine-protein kinase Rio1 | chr5:14793037-14795828 FORWARD LENGTH=531;; (*ITAG) Solyc08g080850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61201523-61207660 transcript_region:SL2.40ch08:61201523..61207660+ go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase RIO1 (AHRD V1 **** Q75XU7_TOBAC); contains Interpro domain(s) IPR017407 Serine/threonine-protein kinase Rio1 "; GO:0004672 NbS00020341g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|429; (*GB) gi|255578300|ref|XP_002530017.1| (e_value=2e-88) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=3e-19) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=3e-20) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc02g088310.1.1 (e_value=4e-106) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45026638-45028664 transcript_region:SL2.40ch02:45026638..45028664+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2/ERF domain-containing transcription factor (AHRD V1 ***- B9IK18_POPTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00020341g0001.1 protein AED:0.26 eAED:0.26 QI:180|0.7|0.72|0.90|1|1|11|255|733; (*GB) gi|359489011|ref|XP_002278752.2| (e_value=0.0) PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera];; (*SWP) sp|Q06538|YL241_YEAST (e_value=8e-23) Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1;; (*TAIR) AT3G01100.1 (e_value=0.0) | Symbols: HYP1, ATHYP1 | hypothetical protein 1 | chr3:35013-38176 REVERSE LENGTH=703;; (*ITAG) Solyc02g088300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45016695-45024991 transcript_region:SL2.40ch02:45016695..45024991+ go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00020341g0006.1 protein AED:0.17 eAED:0.17 QI:143|1|1|1|0.9|0.81|11|408|511; (*GB) gi|42539899|gb|AAS18877.1| (e_value=0.0) SNF1-related protein kinase alpha subunit [Nicotiana attenuata];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=0.0) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.2 (e_value=0.0) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-34143 REVERSE LENGTH=535;; (*ITAG) Solyc02g067030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31839840-31851609 transcript_region:SL2.40ch02:31839840..31851609- go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase catalytic subunit alpha-2 (AHRD V1 **** D1LWW2_SACKO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00029814g0003.1 protein AED:0.11 eAED:0.11 QI:1347|1|1|1|0.75|0.77|9|300|586; (*GB) gi|359496170|ref|XP_002270005.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256311 [Vitis vinifera];; (*TAIR) AT1G28240.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581;; (*ITAG) Solyc03g006430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1029435-1035364 transcript_region:SL2.40ch03:1029435..1035364+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00001794g0005.1 protein AED:0.34 eAED:0.36 QI:0|0.66|0.71|1|0.83|0.85|7|0|280; (*GB) gi|225464726|ref|XP_002264202.1| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100265576 [Vitis vinifera];; (*TAIR) AT5G44600.1 (e_value=8e-66) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:17989867-17991519 FORWARD LENGTH=333;; (*ITAG) Solyc08g013720.2.1 (e_value=2e-119) genomic_reference:SL2.40ch08 gene_region:3084903-3091682 transcript_region:SL2.40ch08:3084903..3091682+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU06_ARATH)"; NbS00001794g0006.1 protein AED:0.36 eAED:0.38 QI:0|0.75|0.4|1|1|1|5|0|287; (*GB) gi|380702814|gb|AFD96389.1| (e_value=1e-175) nodulin 26-like intrinsic protein [Solanum tuberosum];; (*SWP) sp|Q9SV84|NIP51_ARATH (e_value=3e-136) Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1;; (*TAIR) AT4G10380.1 (e_value=2e-137) | Symbols: NIP5;1, NLM6, NLM8 | NOD26-like intrinsic protein 5;1 | chr4:6431530-6434510 REVERSE LENGTH=304;; (*ITAG) Solyc08g013730.2.1 (e_value=1e-176) genomic_reference:SL2.40ch08 gene_region:3092331-3096242 transcript_region:SL2.40ch08:3092331..3096242- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00001794g0009.1 protein AED:0.37 eAED:0.41 QI:0|0|0|1|0|0|2|0|87 NbS00052900g0001.1 protein AED:0.05 eAED:0.14 QI:0|0|0|1|1|1|2|0|407; (*GB) gi|255543288|ref|XP_002512707.1| (e_value=5e-169) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=5e-29) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=4e-141) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc11g040150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28610740-28616082 transcript_region:SL2.40ch11:28610740..28616082- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00051378g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|330; (*GB) gi|225436331|ref|XP_002268230.1| (e_value=7e-143) PREDICTED: uncharacterized protein LOC100255180 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=2e-101) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00027404g0011.1 protein AED:0.07 eAED:0.08 QI:0|1|0.8|1|1|1|5|0|602; (*GB) gi|255565409|ref|XP_002523695.1| (e_value=0.0) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=0.0) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=0.0) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc11g069090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50759436-50762771 transcript_region:SL2.40ch11:50759436..50762771+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C0NDN3_AJECG); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00027404g0012.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|0.75|4|0|194; (*GB) gi|225435249|ref|XP_002284989.1| (e_value=7e-132) PREDICTED: proteasome subunit beta type-4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q7DLR9|PSB4_ARATH (e_value=3e-125) Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2;; (*TAIR) AT1G56450.1 (e_value=2e-126) | Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246;; (*ITAG) Solyc11g069150.1.1 (e_value=1e-139) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50834495-50838333 transcript_region:SL2.40ch11:50834495..50838333- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9IKM7_POPTR); contains Interpro domain(s) IPR016295 Proteasome endopeptidase complex, beta subunit "; GO:0005839 NbS00027404g0001.1 protein AED:0.25 eAED:0.33 QI:37|0|0.66|1|0|0.33|3|210|144; (*GB) gi|297734928|emb|CBI17162.3| (e_value=2e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G45020.1 (e_value=1e-38) | Symbols: | Ribosomal L18p/L5e family protein | chr3:16469167-16469568 REVERSE LENGTH=133;; (*ITAG) Solyc11g069080.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50755322-50755516 transcript_region:SL2.40ch11:50755322..50755516- functional_description:"Os09g0549700 protein (Fragment) (AHRD V1 ***- C7J776_ORYSJ)"; NbS00025827g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0.87|1|0.85|0.75|8|0|292; (*GB) gi|224142221|ref|XP_002324457.1| (e_value=4e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5JNC0|COQ5_ORYSJ (e_value=2e-159) 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1;; (*TAIR) AT5G57300.3 (e_value=5e-160) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23208705-23210611 REVERSE LENGTH=288;; (*ITAG) Solyc01g081470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73186474-73193591 transcript_region:SL2.40ch01:73186474..73193591- go_terms:GO:0008168 functional_description:"Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (AHRD V1 ***- D0N8X4_PHYIN); contains Interpro domain(s) IPR004033 UbiE/COQ5 methyltransferase "; GO:0008168 NbS00025827g0012.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|2|340|163 NbS00025827g0010.1 protein AED:0.27 eAED:0.28 QI:0|0.83|0.85|1|1|1|7|116|296; (*GB) gi|296090185|emb|CBI40004.3| (e_value=2e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|P73161|TRMB_SYNY3 (e_value=2e-31) tRNA (guanine-N(7)-)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trmB PE=3 SV=2;; (*TAIR) AT5G17660.1 (e_value=3e-92) | Symbols: | tRNA (guanine-N-7) methyltransferase | chr5:5818778-5820811 REVERSE LENGTH=312;; (*ITAG) Solyc01g081460.2.1 (e_value=1e-148) genomic_reference:SL2.40ch01 gene_region:73180915-73185697 transcript_region:SL2.40ch01:73180915..73185697- go_terms:GO:0006400 functional_description:"tRNA (guanine-N(7)-)-methyltransferase (AHRD V1 ***- D8G8F8_9CYAN); contains Interpro domain(s) IPR003358 tRNA (guanine-N-7) methyltransferase "; GO:0006400 NbS00020825g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0|3|164|48 NbS00020825g0007.1 protein AED:0.35 eAED:0.35 QI:840|1|1|1|0.25|0.8|5|0|130; (*GB) gi|297734175|emb|CBI15422.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G18460.1 (e_value=3e-32) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:6352682-6355971 FORWARD LENGTH=701;; (*ITAG) Solyc12g038160.1.1 (e_value=4e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34524304-34530987 transcript_region:SL2.40ch12:34524304..34530987+ go_terms:GO:0016298 functional_description:"Lipase family protein (AHRD V1 **** D7KRN7_ARALY); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0016298 NbS00060093g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.83|1|1|1|6|454|300; (*GB) gi|297820170|ref|XP_002877968.1| (e_value=1e-127) ATVAMP727 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9M376|VA727_ARATH (e_value=2e-128) Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1;; (*TAIR) AT3G54300.2 (e_value=2e-129) | Symbols: ATVAMP727, VAMP727 | vesicle-associated membrane protein 727 | chr3:20108355-20110127 REVERSE LENGTH=240;; (*ITAG) Solyc11g006780.1.1 (e_value=3e-144) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1363332-1367317 transcript_region:SL2.40ch11:1363332..1367317+ go_terms:GO:0016021,GO:0006810 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0016021,GO:0006810 NbS00005463g0006.1 protein AED:0.17 eAED:0.19 QI:0|0|0|0.66|0|0.33|3|0|213; (*GB) gi|147779795|emb|CAN62295.1| (e_value=1e-59) hypothetical protein VITISV_019973 [Vitis vinifera];; (*SWP) sp|Q9FT54|GTE6_ARATH (e_value=5e-41) Transcription factor GTE6 OS=Arabidopsis thaliana GN=GTE6 PE=2 SV=1;; (*TAIR) AT3G52280.1 (e_value=4e-42) | Symbols: GTE6 | general transcription factor group E6 | chr3:19389103-19391289 REVERSE LENGTH=369;; (*ITAG) Solyc09g090370.2.1 (e_value=2e-77) genomic_reference:SL2.40ch09 gene_region:65243091-65247723 transcript_region:SL2.40ch09:65243091..65247723+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00019236g0008.1 protein AED:0.22 eAED:0.22 QI:43|0.94|0.84|1|0.61|0.52|19|428|848; (*GB) gi|255539136|ref|XP_002510633.1| (e_value=0.0) scythe/bat3, putative [Ricinus communis];; (*SWP) sp|P46379|BAG6_HUMAN (e_value=3e-13) Large proline-rich protein BAG6 OS=Homo sapiens GN=BAG6 PE=1 SV=2;; (*TAIR) AT5G42220.1 (e_value=2e-158) | Symbols: | Ubiquitin-like superfamily protein | chr5:16872962-16877455 FORWARD LENGTH=879;; (*ITAG) Solyc04g082160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63530305-63538908 transcript_region:SL2.40ch04:63530305..63538908+ go_terms:GO:0043008 functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0043008 NbS00020522g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|356571087|ref|XP_003553712.1| (e_value=7e-30) PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max];; (*SWP) sp|Q9SRX4|PME7_ARATH (e_value=1e-26) Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1;; (*TAIR) AT1G02810.1 (e_value=8e-28) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc01g099950.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81810135-81812985 transcript_region:SL2.40ch01:81810135..81812985- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00028118g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|71 NbS00010685g0001.1 protein AED:0.22 eAED:0.22 QI:174|0.75|0.8|1|1|1|5|314|323; (*GB) gi|6692816|dbj|BAA89423.1| (e_value=0.0) allyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q39173|P2_ARATH (e_value=3e-164) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT5G16990.1 (e_value=2e-165) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343;; (*ITAG) Solyc12g096760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63880129-63883680 transcript_region:SL2.40ch12:63880129..63883680+ go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-- Q5HE18_STAAC); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0055114 NbS00048975g0006.1 protein AED:0.23 eAED:0.24 QI:300|0.88|0.85|1|0.65|0.70|27|0|1040; (*GB) gi|225430750|ref|XP_002266705.1| (e_value=0.0) PREDICTED: nucleolar protein 6-like [Vitis vinifera];; (*SWP) sp|Q6NRY2|NOL6_XENLA (e_value=2e-110) Nucleolar protein 6 OS=Xenopus laevis GN=nol6 PE=2 SV=2;; (*TAIR) AT1G63810.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nrap protein (InterPro:IPR005554); Has 396 Blast hits to 382 proteins in 182 species: Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | chr1:23669690-23675542 REVERSE LENGTH=1053;; (*ITAG) Solyc02g085230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42772382-42784801 transcript_region:SL2.40ch02:42772382..42784801- functional_description:"Nucleolar protein 6 (AHRD V1 ***- B0WP83_CULQU); contains Interpro domain(s) IPR005554 Nrap protein "; NbS00003076g0009.1 protein AED:0.23 eAED:0.23 QI:72|0.66|0.75|1|0.66|0.5|4|337|264; (*GB) gi|359495755|ref|XP_002267846.2| (e_value=1e-44) PREDICTED: ycf20-like protein [Vitis vinifera];; (*SWP) sp|O80813|YC20L_ARATH (e_value=1e-33) Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2;; (*TAIR) AT1G65420.1 (e_value=1e-34) | Symbols: NPQ7 | Protein of unknown function (DUF565) | chr1:24297669-24298374 REVERSE LENGTH=197;; (*ITAG) Solyc03g063060.2.1 (e_value=2e-79) genomic_reference:SL2.40ch03 gene_region:30456583-30465240 transcript_region:SL2.40ch03:30456583..30465240+ functional_description:"Ycf20-like protein (AHRD V1 ***- YC20L_ARATH); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00003076g0008.1 protein AED:0.07 eAED:0.07 QI:59|1|1|1|0.77|0.9|10|335|884; (*GB) gi|225448992|ref|XP_002273503.1| (e_value=0.0) PREDICTED: pumilio homolog 4 [Vitis vinifera];; (*SWP) sp|Q9SS47|PUM4_ARATH (e_value=0.0) Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2;; (*TAIR) AT3G10360.1 (e_value=0.0) | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3211276-3215144 REVERSE LENGTH=1003;; (*ITAG) Solyc11g008490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2668081-2673243 transcript_region:SL2.40ch11:2668081..2673243+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio-like (AHRD V1 *-*- Q6K9R1_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00003076g0007.1 protein AED:0.20 eAED:0.20 QI:69|0|0.5|1|1|1|2|344|65; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=1e-19) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=4e-21) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=7e-18) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc05g055640.2.1 (e_value=2e-22) genomic_reference:SL2.40ch05 gene_region:64354473-64356655 transcript_region:SL2.40ch05:64354473..64356655+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0003735 NbS00020113g0015.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0|2|640|359; (*GB) gi|225462434|ref|XP_002264354.1| (e_value=8e-140) PREDICTED: uncharacterized protein LOC100241929 [Vitis vinifera];; (*TAIR) AT3G52060.2 (e_value=2e-126) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:19310987-19312027 REVERSE LENGTH=346;; (*ITAG) Solyc06g073970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42111866-42112939 transcript_region:SL2.40ch06:42111866..42112939- go_terms:GO:0005515 functional_description:"AT5G22070 protein (Fragment) (AHRD V1 ***- B9DHZ2_ARATH); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00020113g0014.1 protein AED:0.26 eAED:0.31 QI:0|0.68|0.58|0.94|0.5|0.47|17|0|681; (*GB) gi|225462440|ref|XP_002264614.1| (e_value=0.0) PREDICTED: serine/threonine-protein phosphatase BSL3-like [Vitis vinifera];; (*SWP) sp|Q9SHS7|BSL3_ARATH (e_value=0.0) Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2;; (*TAIR) AT2G27210.1 (e_value=0.0) | Symbols: BSL3 | BRI1 suppressor 1 (BSU1)-like 3 | chr2:11630188-11636182 FORWARD LENGTH=1006;; (*ITAG) Solyc06g073960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42095905-42107056 transcript_region:SL2.40ch06:42095905..42107056- go_terms:GO:0004722,GO:0005515 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9DFZ9_ARATH); contains Interpro domain(s) IPR012391 Serine/threonine protein phosphatase, BSU1 "; GO:0004722,GO:0005515 NbS00020113g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|82623403|gb|ABB87116.1| (e_value=1e-34) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=5e-27) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=4e-28) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00020113g0016.1 protein AED:0.38 eAED:0.51 QI:0|0.25|0|0.8|0|0.2|5|0|195; (*GB) gi|37700327|gb|AAR00617.1| (e_value=2e-24) hypothetical protein [Oryza sativa Japonica Group];; (*ITAG) Solyc03g096750.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:52543139-52546327 transcript_region:SL2.40ch03:52543139..52546327- go_terms:GO:0008270 functional_description:"Os07g0102900 protein (Fragment) (AHRD V1 *-*- Q0D974_ORYSJ); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00020113g0004.1 protein AED:0.44 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|94 NbS00038689g0004.1 protein AED:0.42 eAED:0.44 QI:0|0.2|0.16|0.83|0.4|0.5|6|0|242; (*GB) gi|222622725|gb|EEE56857.1| (e_value=6e-118) hypothetical protein OsJ_06480 [Oryza sativa Japonica Group];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=9e-117) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=7e-118) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc06g074300.2.1 (e_value=9e-127) genomic_reference:SL2.40ch06 gene_region:42312797-42316469 transcript_region:SL2.40ch06:42312797..42316469- go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00023370g0001.1 protein AED:0.02 eAED:0.02 QI:90|0|0.5|1|0|0.5|2|217|120; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=6e-45) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=3e-46) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G51590.1 (e_value=8e-22) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc10g076200.1.1 (e_value=4e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58376302-58376748 transcript_region:SL2.40ch10:58376302..58376748+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGH2_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00054691g0001.1 protein AED:0.16 eAED:0.16 QI:32|0.33|0.25|1|1|1|4|0|585; (*GB) gi|86212377|gb|ABC87761.1| (e_value=0.0) JAR1-like protein [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00004254g0101.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|106 NbS00004254g0104.1 protein AED:0.16 eAED:0.23 QI:0|0|0|1|0|0|4|0|261 NbS00004254g0210.1 protein AED:0.25 eAED:0.25 QI:146|0.5|0.8|1|0.5|0.8|5|0|221 NbS00013402g0001.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|120; (*ITAG) Solyc02g089460.1.1 (e_value=5e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45850987-45851292 transcript_region:SL2.40ch02:45850987..45851292- functional_description:"Unknown Protein (AHRD V1)"; NbC23947432g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|0|1|0|62; (*GB) gi|1587958|prf||2207375E (e_value=4e-35) phytochrome;; (*SWP) sp|P93528|PHYC_SORBI (e_value=2e-32) Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1;; (*TAIR) AT5G35840.1 (e_value=1e-29) | Symbols: PHYC | phytochrome C | chr5:14008049-14011619 FORWARD LENGTH=1111;; (*ITAG) Solyc07g045480.2.1 (e_value=8e-35) genomic_reference:SL2.40ch07 gene_region:55934576-55945063 transcript_region:SL2.40ch07:55934576..55945063+ go_terms:GO:0005515,GO:0004673 functional_description:"Phytochrome F"; GO:0005515,GO:0004673 NbS00011338g0012.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|0.83|1|1|6|24|338; (*GB) gi|255562580|ref|XP_002522296.1| (e_value=5e-125) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q9SYM4|TPS1_ARATH (e_value=9e-104) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1;; (*TAIR) AT1G78580.1 (e_value=7e-105) | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552495-29557482 REVERSE LENGTH=942;; (*ITAG) Solyc02g071590.1.1 (e_value=2e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35565304-35582603 transcript_region:SL2.40ch02:35565304..35582603- go_terms:GO:0003825 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR012766 Alpha,alpha-trehalose-phosphate synthase "; GO:0003825 NbS00011338g0017.1 protein AED:0.16 eAED:0.16 QI:84|0.6|0.66|1|0.6|0.66|6|265|312; (*GB) gi|60459375|gb|AAX20033.1| (e_value=0.0) GDSL-lipase protein [Capsicum annuum];; (*SWP) sp|Q9FK75|GDL82_ARATH (e_value=1e-154) GDSL esterase/lipase At5g45670 OS=Arabidopsis thaliana GN=At5g45670 PE=2 SV=1;; (*TAIR) AT5G45670.1 (e_value=1e-155) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18528600-18530164 FORWARD LENGTH=362;; (*ITAG) Solyc02g071610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35588862-35591358 transcript_region:SL2.40ch02:35588862..35591358+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45670 (AHRD V1 ***- GDL82_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00011338g0016.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.66|0.83|0.8|0.66|6|161|400; (*GB) gi|71143481|gb|AAZ23955.1| (e_value=0.0) GDSL-lipase 1 [Capsicum annuum];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=0.0) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35594738-35596912 transcript_region:SL2.40ch02:35594738..35596912+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00004550g0007.1 protein AED:0.13 eAED:0.13 QI:407|1|0.97|1|0.86|0.89|39|698|1562; (*GB) gi|116047947|gb|ABJ53199.1| (e_value=0.0) myosin XI-K [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G20490.1 (e_value=0.0) | Symbols: XIK, ATXIK, XI-17 | Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545;; (*ITAG) Solyc07g041150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49203508-49220064 transcript_region:SL2.40ch07:49203508..49220064+ go_terms:GO:0060001 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00004550g0106.1 protein AED:0.11 eAED:0.11 QI:531|1|1|1|0.5|0.4|5|419|371 NbS00004550g0111.1 protein AED:0.28 eAED:0.28 QI:0|0.88|0.8|1|0.77|0.8|10|387|307 NbS00004550g0113.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|301 NbS00045357g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0|2|0|61; (*ITAG) Solyc03g123960.2.1 (e_value=3e-18) genomic_reference:SL2.40ch03 gene_region:64704384-64715097 transcript_region:SL2.40ch03:64704384..64715097+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026632g0004.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|1|1|5|317|471; (*GB) gi|57157621|dbj|BAD83779.1| (e_value=0.0) tryptophan synthase beta subunit [Polygonum tinctorium];; (*SWP) sp|O50046|TRPB_CAMAC (e_value=0.0) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1;; (*TAIR) AT5G54810.1 (e_value=0.0) | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan synthase beta-subunit 1 | chr5:22264805-22266738 REVERSE LENGTH=470;; (*ITAG) Solyc10g006400.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1014935-1019360 transcript_region:SL2.40ch10:1014935..1019360+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0004834 NbS00014422g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.75|1|1|4|0|381; (*GB) gi|224089537|ref|XP_002308749.1| (e_value=1e-138) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47790.1 (e_value=6e-120) | Symbols: | SMAD/FHA domain-containing protein | chr5:19351396-19352579 FORWARD LENGTH=369;; (*ITAG) Solyc04g015170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5350550-5353424 transcript_region:SL2.40ch04:5350550..5353424+ functional_description:"Nuclear inhibitor of protein phosphatase 1 (AHRD V1 *--- Q9V7W9_DROME); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00014422g0024.1 protein AED:0.27 eAED:0.27 QI:238|0.87|0.88|1|0.75|0.88|9|624|295; (*GB) gi|1351271|sp|P48496.1|TPIC_SPIOL (e_value=8e-161) RecName: Full=Triosephosphate isomerase, chloroplastic; Short=TIM; Short=Triose-phosphate isomerase; Flags: Precursor;; (*SWP) sp|P48496|TPIC_SPIOL (e_value=2e-162) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1;; (*TAIR) AT2G21170.1 (e_value=2e-148) | Symbols: TIM, PDTPI | triosephosphate isomerase | chr2:9071047-9073106 REVERSE LENGTH=315;; (*ITAG) Solyc01g111120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89253979-89260194 transcript_region:SL2.40ch01:89253979..89260194- go_terms:GO:0005515,GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** D6N3G7_GOSHI); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0005515,GO:0004807 NbS00014422g0006.1 protein AED:0.36 eAED:0.39 QI:183|0.8|0.33|1|1|1|6|0|349; (*GB) gi|224080584|ref|XP_002306170.1| (e_value=4e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT23|BH121_ARATH (e_value=1e-76) Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1;; (*TAIR) AT3G19860.2 (e_value=7e-78) | Symbols: bHLH121 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6903842-6905863 FORWARD LENGTH=337;; (*ITAG) Solyc01g111130.2.1 (e_value=1e-163) genomic_reference:SL2.40ch01 gene_region:89262003-89265946 transcript_region:SL2.40ch01:89262003..89265946- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014422g0022.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.81|0.83|12|281|336; (*GB) gi|255576717|ref|XP_002529246.1| (e_value=7e-175) Protein FAM50A, putative [Ricinus communis];; (*SWP) sp|Q69JZ7|XCT_ORYSJ (e_value=2e-174) Protein XAP5 CIRCADIAN TIMEKEEPER OS=Oryza sativa subsp. japonica GN=XCT PE=2 SV=1;; (*TAIR) AT2G21150.1 (e_value=1e-167) | Symbols: XCT | XAP5 family protein | chr2:9065397-9067921 FORWARD LENGTH=337;; (*ITAG) Solyc01g111140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89267732-89273059 transcript_region:SL2.40ch01:89267732..89273059+ go_terms:GO:0005634 functional_description:"Protein FAM50 homolog (AHRD V1 *--- FAM50_DROPS); contains Interpro domain(s) IPR007005 XAP5 protein "; GO:0005634 NbS00014422g0020.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|258; (*GB) gi|3402282|emb|CAA04449.1| (e_value=5e-85) proline-rich protein [Solanum tuberosum];; (*TAIR) AT4G38770.1 (e_value=2e-34) | Symbols: PRP4, ATPRP4 | proline-rich protein 4 | chr4:18097009-18098448 REVERSE LENGTH=448;; (*ITAG) Solyc10g054900.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51531598-51532532 transcript_region:SL2.40ch10:51531598..51532532+ functional_description:"Proline-rich protein (AHRD V1 ***- Q9M6T7_NICGL); contains Interpro domain(s) IPR010616 Protein of unknown function DUF1210 "; NbS00014422g0026.1 protein AED:0.28 eAED:0.28 QI:7|1|0.87|1|0.85|0.75|8|347|257; (*GB) gi|225427923|ref|XP_002275216.1| (e_value=1e-109) PREDICTED: translocon-associated protein subunit alpha [Vitis vinifera];; (*SWP) sp|P45434|SSRA_ARATH (e_value=1e-73) Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3;; (*TAIR) AT2G16595.1 (e_value=1e-79) | Symbols: | Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251;; (*ITAG) Solyc01g111150.2.1 (e_value=3e-144) genomic_reference:SL2.40ch01 gene_region:89273982-89278444 transcript_region:SL2.40ch01:89273982..89278444+ go_terms:GO:0005048 functional_description:"Translocon-associated protein alpha subunit (AHRD V1 ***- B6SRQ1_MAIZE); contains Interpro domain(s) IPR005595 Translocon-associated protein (TRAP), alpha subunit "; GO:0005048 NbS00014422g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|169930141|gb|ACB05668.1| (e_value=5e-109) cyclophilin [Capsicum annuum];; (*SWP) sp|P21568|CYPH_SOLLC (e_value=2e-106) Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1;; (*TAIR) AT2G21130.1 (e_value=2e-92) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:9055619-9056143 REVERSE LENGTH=174;; (*ITAG) Solyc01g111170.2.1 (e_value=2e-107) genomic_reference:SL2.40ch01 gene_region:89284136-89285146 transcript_region:SL2.40ch01:89284136..89285146+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00014422g0027.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|62 NbS00041118g0006.1 protein AED:0.08 eAED:0.08 QI:362|0|1|1|0|1|2|224|63; (*GB) gi|224082206|ref|XP_002306602.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=7e-19) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.2 (e_value=4e-20) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6867742-6869114 FORWARD LENGTH=384;; (*ITAG) Solyc01g096990.2.1 (e_value=5e-24) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00041118g0007.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.75|0|0|4|0|454; (*GB) gi|225439765|ref|XP_002273310.1| (e_value=6e-137) PREDICTED: uncharacterized protein LOC100249946 [Vitis vinifera];; (*ITAG) Solyc04g014240.1.1 (e_value=2e-177) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4542851-4544056 transcript_region:SL2.40ch04:4542851..4544056+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053418g0005.1 protein AED:0.06 eAED:0.09 QI:0|0.66|0.57|1|0.83|0.71|7|0|887; (*GB) gi|147817663|emb|CAN64499.1| (e_value=0.0) hypothetical protein VITISV_043672 [Vitis vinifera];; (*TAIR) AT3G58650.1 (e_value=2e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). | chr3:21696349-21699219 REVERSE LENGTH=820;; (*ITAG) Solyc01g060410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:63709452-63713187 transcript_region:SL2.40ch01:63709452..63713187+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030034g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|0|166; (*GB) gi|14031051|gb|AAK52085.1| (e_value=2e-76) peroxidase [Nicotiana tabacum];; (*SWP) sp|Q96512|PER9_ARATH (e_value=1e-68) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1;; (*TAIR) AT1G44970.1 (e_value=8e-70) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc04g080760.2.1 (e_value=4e-82) genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00034241g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|270309004|dbj|BAI52955.1| (e_value=2e-77) calcium-binding EF-hand protein [Citrullus lanatus subsp. vulgaris];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=1e-73) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=7e-75) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc05g050750.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60029606-60030058 transcript_region:SL2.40ch05:60029606..60030058- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00015813g0015.1 protein AED:0.06 eAED:0.06 QI:272|0.90|0.83|1|0.72|0.75|12|163|1005; (*GB) gi|359483996|ref|XP_002271515.2| (e_value=0.0) PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=0.0) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G30810.2 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:10938139-10941505 REVERSE LENGTH=819;; (*ITAG) Solyc02g069740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34130140-34138107 transcript_region:SL2.40ch02:34130140..34138107+ go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--- KDM5B_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00015813g0013.1 protein AED:0.12 eAED:0.12 QI:307|1|0.85|1|0.83|0.71|7|390|177; (*GB) gi|388521485|gb|AFK48804.1| (e_value=3e-75) unknown [Lotus japonicus];; (*SWP) sp|Q6ASS2|LOL3_ORYSJ (e_value=3e-60) Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1;; (*TAIR) AT4G20380.7 (e_value=3e-54) | Symbols: LSD1 | LSD1 zinc finger family protein | chr4:11005012-11006438 FORWARD LENGTH=189;; (*ITAG) Solyc02g069720.2.1 (e_value=5e-87) genomic_reference:SL2.40ch02 gene_region:34117564-34122011 transcript_region:SL2.40ch02:34117564..34122011+ go_terms:GO:0003700 functional_description:"Zinc finger protein LSD1 (AHRD V1 **-- Q8W195_BRAOL); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type "; GO:0003700 NbS00015813g0014.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|214; (*GB) gi|356556491|ref|XP_003546558.1| (e_value=3e-68) PREDICTED: CASP-like protein 9-like [Glycine max];; (*SWP) sp|B9SV63|CSPLC_RICCO (e_value=2e-66) CASP-like protein RCOM_0770240 OS=Ricinus communis GN=RCOM_0770240 PE=2 SV=1;; (*TAIR) AT5G44550.1 (e_value=6e-59) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:17942100-17943174 REVERSE LENGTH=197;; (*ITAG) Solyc02g069730.2.1 (e_value=7e-101) genomic_reference:SL2.40ch02 gene_region:34122815-34124375 transcript_region:SL2.40ch02:34122815..34124375+ functional_description:"UPF0497 membrane protein 15 (AHRD V1 ***- U497F_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00015813g0016.1 protein AED:0.12 eAED:0.12 QI:0|1|0.75|1|0.42|0.37|8|307|350; (*GB) gi|118486233|gb|ABK94958.1| (e_value=4e-179) unknown [Populus trichocarpa];; (*SWP) sp|A7MCT6|EKI2_MOUSE (e_value=3e-59) Ethanolamine kinase 2 OS=Mus musculus GN=Etnk2 PE=1 SV=1;; (*TAIR) AT1G74320.1 (e_value=2e-172) | Symbols: | Protein kinase superfamily protein | chr1:27941192-27942903 FORWARD LENGTH=350;; (*ITAG) Solyc02g069750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34139654-34148857 transcript_region:SL2.40ch02:34139654..34148857- go_terms:GO:0004103 functional_description:"Choline/ethanolamine kinase (AHRD V1 **** B6TU35_MAIZE); contains Interpro domain(s) IPR002573 Choline/ethanolamine kinase "; GO:0004103 NbS00059820g0005.1 protein AED:0.38 eAED:0.38 QI:0|0.33|0|0.5|0.33|0.5|4|0|171; (*GB) gi|356548561|ref|XP_003542669.1| (e_value=1e-76) PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Glycine max];; (*SWP) sp|A4FUD3|U5S1_BOVIN (e_value=7e-61) 116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1;; (*TAIR) AT1G06220.1 (e_value=1e-76) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987;; (*ITAG) Solyc07g007210.2.1 (e_value=5e-81) genomic_reference:SL2.40ch07 gene_region:1950540-1956871 transcript_region:SL2.40ch07:1950540..1956871+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor like protein (AHRD V1 **** Q9LNC5_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515,GO:0003746 NbS00059820g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|220; (*GB) gi|376008196|gb|AFB18311.1| (e_value=5e-59) F-box protein [Citrus clementina];; (*SWP) sp|Q5EAF6|FB336_ARATH (e_value=5e-17) Probable F-box protein At5g04010 OS=Arabidopsis thaliana GN=NSFBx PE=2 SV=1;; (*TAIR) AT5G04010.1 (e_value=4e-18) | Symbols: | F-box family protein | chr5:1080205-1081068 REVERSE LENGTH=287;; (*ITAG) Solyc04g017670.2.1 (e_value=4e-108) genomic_reference:SL2.40ch04 gene_region:7750281-7751611 transcript_region:SL2.40ch04:7750281..7751611+ functional_description:"F-box family protein (AHRD V1 ***- B9H9G5_POPTR)"; NbS00031055g0004.1 protein AED:0.02 eAED:0.02 QI:264|1|1|1|1|1|3|223|299; (*GB) gi|48209882|gb|AAT40488.1| (e_value=1e-163) putative DNA-binding protein [Solanum demissum];; (*SWP) sp|Q8LC03|ATB13_ARATH (e_value=6e-120) Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2;; (*TAIR) AT1G69780.1 (e_value=5e-121) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294;; (*ITAG) Solyc05g007180.2.1 (e_value=4e-167) genomic_reference:SL2.40ch05 gene_region:1796893-1799609 transcript_region:SL2.40ch05:1796893..1799609+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0043565 NbS00057295g0001.1 protein AED:0.15 eAED:0.20 QI:147|0.75|0.69|1|0.91|0.84|13|344|382; (*GB) gi|350537825|ref|NP_001234056.1| (e_value=0.0) malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|O48902|MDHP_MEDSA (e_value=0.0) Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1;; (*TAIR) AT5G58330.1 (e_value=4e-168) | Symbols: | lactate/malate dehydrogenase family protein | chr5:23580010-23582287 REVERSE LENGTH=443;; (*ITAG) Solyc11g007990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2198505-2203902 transcript_region:SL2.40ch11:2198505..2203902+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q5NE17_SOLLC); contains Interpro domain(s) IPR011273 Malate dehydrogenase, NADP-dependent, plants "; GO:0030060 NbS00009443g0002.1 protein AED:0.13 eAED:0.13 QI:872|1|0.90|1|0.8|0.72|11|0|771; (*GB) gi|350539483|ref|NP_001234657.1| (e_value=0.0) cutin deficient 2 [Solanum lycopersicum];; (*SWP) sp|Q0WV12|ANL2_ARATH (e_value=0.0) Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1;; (*TAIR) AT4G00730.1 (e_value=0.0) | Symbols: ANL2, AHDP | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:299741-304103 REVERSE LENGTH=802;; (*ITAG) Solyc01g091630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76982217-76987692 transcript_region:SL2.40ch01:76982217..76987692- go_terms:GO:0030528 functional_description:"Homeobox-leucine zipper protein ATHB-9 (AHRD V1 *-*- ATBH9_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0030528 NbS00009443g0017.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|8|265|599; (*GB) gi|225453730|ref|XP_002272714.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT13 [Vitis vinifera];; (*SWP) sp|Q93W95|PMTD_ARATH (e_value=0.0) Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1;; (*TAIR) AT4G00740.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:307815-310298 REVERSE LENGTH=600;; (*ITAG) Solyc01g091640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76996514-77003708 transcript_region:SL2.40ch01:76996514..77003708- functional_description:"Dehydration responsive protein (AHRD V1 ***- C0JJG7_SOYBN); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00009443g0018.1 protein AED:0.32 eAED:0.33 QI:0|0.42|0.37|0.87|0.85|0.87|8|0|500; (*GB) gi|271278821|emb|CAY85529.1| (e_value=0.0) Cop11 protein [Carica papaya];; (*SWP) sp|P45432|CSN1_ARATH (e_value=0.0) COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1 PE=1 SV=2;; (*TAIR) AT3G61140.1 (e_value=0.0) | Symbols: FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr3:22626335-22628895 FORWARD LENGTH=441;; (*ITAG) Solyc01g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77004990-77009999 transcript_region:SL2.40ch01:77004990..77009999- go_terms:GO:0031995 functional_description:"COP9 signalosome complex subunit 1 (AHRD V1 ***- B6THB6_MAIZE); contains Interpro domain(s) IPR019585 26S proteasome, regulatory subunit Rpn7 "; GO:0031995 NbS00037769g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.33|1|1|1|3|0|330; (*GB) gi|75315324|sp|Q9XIV8.1|PERN1_TOBAC (e_value=0.0) RecName: Full=Peroxidase N1; AltName: Full=Peroxidase B2; AltName: Full=Peroxidase B3; Flags: Precursor;; (*SWP) sp|Q9XIV8|PERN1_TOBAC (e_value=0.0) Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1;; (*TAIR) AT2G41480.1 (e_value=2e-142) | Symbols: | Peroxidase superfamily protein | chr2:17296986-17298729 REVERSE LENGTH=341;; (*ITAG) Solyc01g105070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85115112-85116901 transcript_region:SL2.40ch01:85115112..85116901+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43499_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00019716g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|224141719|ref|XP_002324212.1| (e_value=1e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|P59082|LFS_ALLCE (e_value=3e-14) Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1;; (*TAIR) AT2G25770.2 (e_value=9e-62) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr2:10992987-10993490 FORWARD LENGTH=167;; (*ITAG) Solyc08g066420.1.1 (e_value=8e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52265221-52265730 transcript_region:SL2.40ch08:52265221..52265730+ functional_description:"Lachrymatory-factor synthase (AHRD V1 ***- B6UBY7_MAIZE); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00006167g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|0.5|2|0|190; (*GB) gi|224068374|ref|XP_002302729.1| (e_value=6e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT2G47540.1 (e_value=6e-35) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:19505901-19506504 FORWARD LENGTH=173;; (*ITAG) Solyc09g075410.2.1 (e_value=7e-73) genomic_reference:SL2.40ch09 gene_region:62620316-62622122 transcript_region:SL2.40ch09:62620316..62622122+ functional_description:"Proline-rich protein (AHRD V1 **-- Q9LZJ7_ARATH); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00006167g0110.1 protein AED:0.33 eAED:0.34 QI:0|0.85|0.68|1|0.66|0.63|22|0|800 NbS00006167g0112.1 protein AED:0.04 eAED:0.16 QI:0|0|0|1|0|0|2|0|390 NbS00047144g0006.1 protein AED:0.27 eAED:0.29 QI:0|1|0.75|1|1|1|4|0|456; (*GB) gi|359481059|ref|XP_003632562.1| (e_value=2e-133) PREDICTED: uncharacterized protein LOC100254761 isoform 2 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=1e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc11g006410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1122705-1126488 transcript_region:SL2.40ch11:1122705..1126488+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbS00047144g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|400; (*GB) gi|255566187|ref|XP_002524081.1| (e_value=1e-129) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04860.1 (e_value=5e-101) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1411760-1414459 REVERSE LENGTH=782;; (*ITAG) Solyc11g006410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1122705-1126488 transcript_region:SL2.40ch11:1122705..1126488+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbS00000285g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|5257560|gb|AAD41409.1|AF159562_1 (e_value=4e-65) cytosolic class II low molecular weight heat shock protein [Prunus dulcis];; (*SWP) sp|Q01545|HSP22_IPONI (e_value=2e-61) 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=7e-53) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062340.2.1 (e_value=1e-59) genomic_reference:SL2.40ch08 gene_region:48122173-48122945 transcript_region:SL2.40ch08:48122173..48122945- go_terms:GO:0051082 functional_description:"Class II small heat shock protein Le-HSP17.6 (AHRD V1 ***- Q96489_SOLLC); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00000285g0015.1 protein AED:0.26 eAED:0.31 QI:69|0.9|0.72|1|0.9|0.90|11|0|321; (*GB) gi|224579303|gb|ACN58229.1| (e_value=0.0) thiosulfate:cyanide sulfurtransferase-like protein [Solanum lycopersicum];; (*SWP) sp|O64530|STR1_ARATH (e_value=0.0) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.1 (e_value=0.0) | Symbols: ST1, ATMST1, MST1, ATRDH1, STR1 | mercaptopyruvate sulfurtransferase 1 | chr1:29800824-29803679 FORWARD LENGTH=379;; (*ITAG) Solyc02g078990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38173616-38185542 transcript_region:SL2.40ch02:38173616..38185542+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792,GO:0016784 NbS00000285g0016.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|0.8|1|6|0|401; (*GB) gi|2499498|sp|Q42962.1|PGKY_TOBAC (e_value=0.0) RecName: Full=Phosphoglycerate kinase, cytosolic;; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=0.0) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=0.0) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00043749g0014.1 protein AED:0.42 eAED:0.65 QI:283|0|0.5|1|1|1|2|0|100 NbS00043749g0013.1 protein AED:0.39 eAED:0.40 QI:0|0.62|0.44|0.88|0.87|0.88|9|0|569; (*GB) gi|225470654|ref|XP_002268214.1| (e_value=1e-157) PREDICTED: uncharacterized protein LOC100258883 [Vitis vinifera];; (*SWP) sp|A8KBL7|MEL2A_DANRE (e_value=2e-13) Methyltransferase-like protein 2-A OS=Danio rerio GN=mettl2a PE=2 SV=1;; (*TAIR) AT2G26200.1 (e_value=8e-153) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11152875-11156330 FORWARD LENGTH=565;; (*ITAG) Solyc08g062770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49090923-49107311 transcript_region:SL2.40ch08:49090923..49107311+ functional_description:"Methyltransferase-like protein 6 (AHRD V1 *-*- B5X6R8_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00043749g0004.1 protein AED:0.46 eAED:0.46 QI:0|0.4|0.66|1|1|1|6|0|191; (*GB) gi|255550085|ref|XP_002516093.1| (e_value=1e-52) Actin-binding protein ABP140, putative [Ricinus communis];; (*SWP) sp|Q6AXU8|METL6_RAT (e_value=5e-27) Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1;; (*TAIR) AT2G26200.1 (e_value=2e-45) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11152875-11156330 FORWARD LENGTH=565;; (*ITAG) Solyc08g062770.2.1 (e_value=3e-69) genomic_reference:SL2.40ch08 gene_region:49090923-49107311 transcript_region:SL2.40ch08:49090923..49107311+ functional_description:"Methyltransferase-like protein 6 (AHRD V1 *-*- B5X6R8_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00043749g0005.1 protein AED:0.45 eAED:0.82 QI:0|0|0|1|1|1|3|0|210; (*ITAG) Solyc01g094420.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00004282g0013.1 protein AED:0.07 eAED:0.07 QI:415|1|0.85|1|1|1|7|0|666; (*GB) gi|225443956|ref|XP_002272405.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 20 [Vitis vinifera];; (*SWP) sp|A7XDQ9|B3GTK_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1;; (*TAIR) AT4G21060.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr4:11242003-11244860 FORWARD LENGTH=684;; (*ITAG) Solyc02g070400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34706503-34714522 transcript_region:SL2.40ch02:34706503..34714522- go_terms:GO:0046872,GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0046872,GO:0016020,GO:0005529 NbS00004282g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0|1|0.66|0.75|4|0|363; (*GB) gi|134303286|gb|ABO70986.1| (e_value=0.0) gibberellin 2-oxidase 5 [Nicotiana tabacum];; (*SWP) sp|Q9XG83|G2OX_PHACN (e_value=3e-142) Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1;; (*TAIR) AT1G30040.1 (e_value=8e-133) | Symbols: ATGA2OX2, GA2OX2 | gibberellin 2-oxidase | chr1:10537769-10539570 FORWARD LENGTH=341;; (*ITAG) Solyc02g070430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34734811-34736850 transcript_region:SL2.40ch02:34734811..34736850- go_terms:GO:0045544,GO:0004062 functional_description:"Gibberellin 2-oxidase 1 (AHRD V1 **** A7LCJ5_SOLTU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0004062 NbS00004282g0014.1 protein AED:0.30 eAED:0.30 QI:15|0.5|0.69|0.84|1|1|13|188|487; (*GB) gi|359483871|ref|XP_002276286.2| (e_value=0.0) PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera];; (*SWP) sp|A0JMA9|KATL2_XENTR (e_value=4e-106) Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1;; (*TAIR) AT2G34560.2 (e_value=5e-164) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14560266-14562695 FORWARD LENGTH=393;; (*ITAG) Solyc02g070440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34752452-34759726 transcript_region:SL2.40ch02:34752452..34759726+ go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit A (AHRD V1 **-* D0P3C9_PHYIN); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00007814g0010.1 protein AED:0.39 eAED:0.39 QI:271|0.4|0.33|1|0.8|0.83|6|224|247; (*GB) gi|224104393|ref|XP_002313422.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55530.1 (e_value=4e-20) | Symbols: SDIR1 | RING/U-box superfamily protein | chr3:20595300-20597188 REVERSE LENGTH=273;; (*ITAG) Solyc06g005630.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:692091-694915 transcript_region:SL2.40ch06:692091..694915- go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase arkadia (AHRD V1 *-** RN111_XENTR); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0004842 NbS00007814g0011.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|0|0|3|0|174; (*GB) gi|255559034|ref|XP_002520540.1| (e_value=4e-39) zinc transporter, putative [Ricinus communis];; (*SWP) sp|Q94EG9|ZIP11_ARATH (e_value=1e-24) Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1;; (*TAIR) AT1G55910.1 (e_value=9e-26) | Symbols: ZIP11 | zinc transporter 11 precursor | chr1:20906161-20907225 FORWARD LENGTH=326;; (*ITAG) Solyc06g005620.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:678159-680743 transcript_region:SL2.40ch06:678159..680743- go_terms:GO:0005375 functional_description:"Zinc transporter (AHRD V1 **** Q9AWG7_MEDTR); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0005375 NbS00017171g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|296084381|emb|CBI24769.3| (e_value=1e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57500.1 (e_value=2e-52) | Symbols: | Galactosyltransferase family protein | chr5:23286406-23287525 REVERSE LENGTH=318;; (*ITAG) Solyc07g044820.1.1 (e_value=1e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55193162-55194049 transcript_region:SL2.40ch07:55193162..55194049+ go_terms:GO:0016020,GO:0006810 functional_description:"Beta-1 3-galactosyltransferase pvg3 (AHRD V1 **-- B6JXP2_SCHJY); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0006810 NbS00017171g0006.1 protein AED:0.25 eAED:0.27 QI:0|0.6|0.16|1|0.6|0.5|6|0|184; (*GB) gi|224139604|ref|XP_002323190.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q28FI8|NEUFC_XENTR (e_value=7e-25) Neuferricin OS=Xenopus tropicalis GN=cyb5d2 PE=2 SV=1;; (*TAIR) AT4G14965.1 (e_value=1e-84) | Symbols: AtMAPR4, MAPR4 | membrane-associated progesterone binding protein 4 | chr4:8551356-8553368 FORWARD LENGTH=245;; (*ITAG) Solyc07g044830.2.1 (e_value=1e-107) genomic_reference:SL2.40ch07 gene_region:55200188-55206864 transcript_region:SL2.40ch07:55200188..55206864+ go_terms:GO:0005515 functional_description:"Membrane-associated progesterone receptor component 1 (AHRD V1 *--- B2WEU6_PYRTR); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0005515 NbS00007521g0004.1 protein AED:0.25 eAED:0.43 QI:0|0|0|1|0|0.5|2|0|179; (*ITAG) Solyc07g009200.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:4244968-4245528 transcript_region:SL2.40ch07:4244968..4245528- functional_description:"Unknown Protein (AHRD V1)"; NbS00007521g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|352090595|gb|AEQ61808.1| (e_value=4e-37) NBS-LRR class disease resistance protein [Sesamum indicum];; (*SWP) sp|Q6L406|R1B19_SOLDE (e_value=1e-21) Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-22) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc07g009180.1.1 (e_value=6e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00004693g0001.1 protein AED:0.00 eAED:0.00 QI:226|-1|1|1|-1|1|1|0|87; (*GB) gi|359497161|ref|XP_002270046.2| (e_value=4e-34) PREDICTED: uncharacterized protein LOC100261774 [Vitis vinifera];; (*TAIR) AT3G07400.1 (e_value=2e-30) | Symbols: | lipase class 3 family protein | chr3:2367456-2372238 FORWARD LENGTH=1003;; (*ITAG) Solyc09g056350.2.1 (e_value=9e-50) genomic_reference:SL2.40ch09 gene_region:44381484-44404029 transcript_region:SL2.40ch09:44381484..44404029- go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7L6K1_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00041857g0004.1 protein AED:0.27 eAED:0.27 QI:222|1|1|1|0.5|0.6|5|542|174; (*GB) gi|224134755|ref|XP_002321898.1| (e_value=4e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52200.1 (e_value=2e-20) | Symbols: | phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191;; (*ITAG) Solyc03g025980.2.1 (e_value=3e-56) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00019004g0013.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|0.75|0.66|0.5|4|0|331; (*GB) gi|225444361|ref|XP_002264829.1| (e_value=4e-149) PREDICTED: tryptophan synthase beta chain 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O50046|TRPB_CAMAC (e_value=5e-123) Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1;; (*TAIR) AT5G28237.1 (e_value=1e-137) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr5:10207477-10213542 REVERSE LENGTH=465;; (*ITAG) Solyc10g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:234474-236768 transcript_region:SL2.40ch10:234474..236768+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0004834 NbS00019004g0003.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|1|1|2|0|200; (*GB) gi|113205445|gb|AAW28576.2| (e_value=2e-11) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00019004g0012.1 protein AED:0.12 eAED:0.15 QI:224|1|0.9|1|1|1|10|0|338; (*GB) gi|255554947|ref|XP_002518511.1| (e_value=2e-180) Adenosine deaminase, putative [Ricinus communis];; (*SWP) sp|Q6DHV7|ADAL_HUMAN (e_value=2e-70) Adenosine deaminase-like protein OS=Homo sapiens GN=ADAL PE=2 SV=2;; (*TAIR) AT4G04880.1 (e_value=5e-168) | Symbols: | adenosine/AMP deaminase family protein | chr4:2465055-2467103 REVERSE LENGTH=355;; (*ITAG) Solyc10g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:223309-228141 transcript_region:SL2.40ch10:223309..228141- go_terms:GO:0004000 functional_description:"Adenosine deaminase-like protein (Predicted) (AHRD V1 **** B2KIP2_RHIFE); contains Interpro domain(s) IPR001365 Adenosine/AMP deaminase "; GO:0004000 NbS00028346g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|189; (*GB) gi|224057482|ref|XP_002299237.1| (e_value=2e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54G07|SLMO_DICDI (e_value=2e-30) Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1;; (*TAIR) AT5G13070.1 (e_value=7e-112) | Symbols: | MSF1-like family protein | chr5:4148216-4149062 FORWARD LENGTH=183;; (*ITAG) Solyc12g100050.1.1 (e_value=4e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65284796-65285353 transcript_region:SL2.40ch12:65284796..65285353- functional_description:"Slowmo homolog 2 (AHRD V1 **-- B5XGX8_SALSA); contains Interpro domain(s) IPR006797 PRELI/MSF1 "; NbS00001341g0005.1 protein AED:0.09 eAED:0.09 QI:190|0.84|0.92|1|0.61|0.5|14|365|521; (*GB) gi|224131042|ref|XP_002320987.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=2e-16) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=3e-126) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc06g084590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45950566-45959677 transcript_region:SL2.40ch06:45950566..45959677+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_HUMAN); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00001341g0006.1 protein AED:0.15 eAED:0.15 QI:189|0.87|0.55|1|0.87|1|9|599|406; (*GB) gi|255548531|ref|XP_002515322.1| (e_value=0.0) Aminotransferase ybdL, putative [Ricinus communis];; (*SWP) sp|Q16773|KAT1_HUMAN (e_value=2e-84) Kynurenine--oxoglutarate transaminase 1 OS=Homo sapiens GN=CCBL1 PE=1 SV=1;; (*TAIR) AT1G77670.1 (e_value=3e-99) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:29189043-29190901 REVERSE LENGTH=440;; (*ITAG) Solyc11g013170.1.1 (e_value=2e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6035007-6043373 transcript_region:SL2.40ch11:6035007..6043373+ go_terms:GO:0009058,GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- Q67UZ0_ORYSJ); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00005070g0018.1 protein AED:0.11 eAED:0.11 QI:294|0.71|0.62|0.87|1|1|8|0|331; (*GB) gi|359480159|ref|XP_002276396.2| (e_value=3e-130) PREDICTED: protein fat-free homolog [Vitis vinifera];; (*SWP) sp|Q5ZJ25|FFR_CHICK (e_value=4e-30) Protein fat-free homolog OS=Gallus gallus GN=FFR PE=2 SV=1;; (*TAIR) AT4G02030.1 (e_value=1e-112) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780;; (*ITAG) Solyc01g079490.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:71038694-71056506 transcript_region:SL2.40ch01:71038694..71056506+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0042802 NbS00005070g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.86|0.75|0.93|0.73|0.62|16|392|722; (*GB) gi|255548461|ref|XP_002515287.1| (e_value=0.0) DNA replication licensing factor MCM7, putative [Ricinus communis];; (*SWP) sp|P43299|PROL_ARATH (e_value=0.0) Protein PROLIFERA OS=Arabidopsis thaliana GN=PRL PE=1 SV=2;; (*TAIR) AT4G02060.2 (e_value=0.0) | Symbols: PRL | Minichromosome maintenance (MCM2/3/5) family protein | chr4:901484-905297 FORWARD LENGTH=716;; (*ITAG) Solyc01g079500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71059737-71065826 transcript_region:SL2.40ch01:71059737..71065826+ go_terms:GO:0043140 functional_description:"DNA replication licensing factor (AHRD V1 **** Q2U020_ASPOR); contains Interpro domain(s) IPR008050 MCM protein 7 "; GO:0043140 NbS00005070g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|1617197|emb|CAA96569.1| (e_value=3e-53) CP12 [Nicotiana tabacum];; (*SWP) sp|Q9LZP9|CP122_ARATH (e_value=4e-33) Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1;; (*TAIR) AT3G62410.1 (e_value=3e-34) | Symbols: CP12-2, CP12 | CP12 domain-containing protein 2 | chr3:23091006-23091401 FORWARD LENGTH=131;; (*ITAG) Solyc01g079470.2.1 (e_value=2e-53) genomic_reference:SL2.40ch01 gene_region:71027262-71027968 transcript_region:SL2.40ch01:71027262..71027968+ go_terms:GO:0005515 functional_description:"CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12 "; GO:0005515 NbS00005070g0015.1 protein AED:0.45 eAED:0.53 QI:0|0|0|1|1|1|2|0|62; (*GB) gi|388520653|gb|AFK48388.1| (e_value=4e-28) unknown [Lotus japonicus];; (*SWP) sp|Q9LZQ0|CX5C2_ARATH (e_value=2e-28) Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1;; (*TAIR) AT5G61310.4 (e_value=2e-29) | Symbols: | Cytochrome c oxidase subunit Vc family protein | chr5:24653543-24653737 REVERSE LENGTH=64;; (*ITAG) Solyc01g079420.2.1 (e_value=9e-34) genomic_reference:SL2.40ch01 gene_region:71005941-71009193 transcript_region:SL2.40ch01:71005941..71009193+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 *-*- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc "; GO:0005746 NbS00005070g0014.1 protein AED:0.20 eAED:0.20 QI:2131|1|0.87|1|0.6|0.56|16|0|338; (*GB) gi|255548453|ref|XP_002515283.1| (e_value=5e-178) dipeptidyl-peptidase, putative [Ricinus communis];; (*SWP) sp|Q10MJ1|CGEP_ORYSJ (e_value=6e-171) Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa subsp. japonica GN=GEP PE=2 SV=1;; (*TAIR) AT2G47390.1 (e_value=4e-170) | Symbols: | Prolyl oligopeptidase family protein | chr2:19442278-19446253 REVERSE LENGTH=961;; (*ITAG) Solyc01g079450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71013718-71023830 transcript_region:SL2.40ch01:71013718..71023830- go_terms:GO:0006508 functional_description:"Peptidase S9 prolyl oligopeptidase active site domain protein (AHRD V1 ***- B4SK00_STRM5); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0006508 NbS00005070g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|10241920|dbj|BAB13719.1| (e_value=2e-97) TBZF [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=2e-30) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G62420.1 (e_value=4e-47) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc01g079480.2.1 (e_value=3e-95) genomic_reference:SL2.40ch01 gene_region:71029166-71030328 transcript_region:SL2.40ch01:71029166..71030328- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* Q1HW69_CAPAN); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00005070g0027.1 protein AED:0.14 eAED:0.28 QI:0|0|0|1|0|0|3|0|191; (*GB) gi|296086365|emb|CBI31954.3| (e_value=8e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G56423.1 (e_value=2e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21129075-21130558 FORWARD LENGTH=270;; (*ITAG) Solyc01g079460.2.1 (e_value=6e-69) genomic_reference:SL2.40ch01 gene_region:71024681-71025697 transcript_region:SL2.40ch01:71024681..71025697- functional_description:"Unknown Protein (AHRD V1)"; NbS00005070g0028.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|127; (*GB) gi|357129263|ref|XP_003566284.1| (e_value=6e-71) PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase-like [Brachypodium distachyon];; (*SWP) sp|Q54EY1|DTD_DICDI (e_value=1e-40) D-tyrosyl-tRNA(Tyr) deacylase OS=Dictyostelium discoideum GN=dtd PE=3 SV=1;; (*TAIR) AT4G18460.1 (e_value=5e-70) | Symbols: | D-Tyr-tRNA(Tyr) deacylase family protein | chr4:10195763-10196679 REVERSE LENGTH=153;; (*ITAG) Solyc02g077310.2.1 (e_value=2e-81) genomic_reference:SL2.40ch02 gene_region:36859619-36863340 transcript_region:SL2.40ch02:36859619..36863340+ go_terms:GO:0051500,GO:0004045 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** B9N9M7_POPTR); contains Interpro domain(s) IPR003732 D-tyrosyl-tRNA(Tyr) deacylase "; GO:0051500,GO:0004045 NbS00027166g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.33|1|1|1|3|0|521; (*GB) gi|24430421|dbj|BAC22609.1| (e_value=0.0) 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=5e-61) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT5G10770.1 (e_value=3e-159) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474;; (*ITAG) Solyc08g067100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53220701-53224702 transcript_region:SL2.40ch08:53220701..53224702- go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA51_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00037921g0004.1 protein AED:0.22 eAED:0.22 QI:941|1|1|1|0.71|0.62|8|336|252; (*GB) gi|225459083|ref|XP_002283809.1| (e_value=9e-150) PREDICTED: argininosuccinate lyase [Vitis vinifera];; (*SWP) sp|A8Z066|ARLY_STAAT (e_value=3e-74) Argininosuccinate lyase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=argH PE=3 SV=1;; (*TAIR) AT5G10920.1 (e_value=3e-138) | Symbols: | L-Aspartase-like family protein | chr5:3441805-3443892 FORWARD LENGTH=517;; (*ITAG) Solyc04g076320.2.1 (e_value=1e-166) genomic_reference:SL2.40ch04 gene_region:58832132-58836418 transcript_region:SL2.40ch04:58832132..58836418- go_terms:GO:0004056 functional_description:"Argininosuccinate lyase (AHRD V1 **** O23637_ARATH); contains Interpro domain(s) IPR009049 Argininosuccinate lyase "; GO:0004056 NbS00037921g0009.1 protein AED:0.07 eAED:0.07 QI:212|0.88|0.88|1|0.92|0.85|27|7|1229; (*GB) gi|359492491|ref|XP_002283825.2| (e_value=0.0) PREDICTED: chromosome-associated kinesin KIF4-like [Vitis vinifera];; (*SWP) sp|Q91784|KIF4_XENLA (e_value=1e-105) Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1;; (*TAIR) AT5G60930.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24515398-24522511 REVERSE LENGTH=1294;; (*ITAG) Solyc04g076310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58822688-58832133 transcript_region:SL2.40ch04:58822688..58832133+ go_terms:GO:0005515,GO:0003774 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9FME7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0003774 NbS00040038g0001.1 protein AED:0.25 eAED:0.59 QI:68|0|0|1|0|0|2|0|73 NbS00005431g0006.1 protein AED:0.12 eAED:0.12 QI:361|0.5|0.33|1|1|1|3|0|455; (*GB) gi|225430802|ref|XP_002267872.1| (e_value=0.0) PREDICTED: probable polyol transporter 6 [Vitis vinifera];; (*SWP) sp|Q8GXR2|PLT6_ARATH (e_value=0.0) Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2;; (*TAIR) AT4G36670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:17287680-17289483 REVERSE LENGTH=493;; (*ITAG) Solyc02g062890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:29413171-29414595 transcript_region:SL2.40ch02:29413171..29414595- go_terms:GO:0005366,GO:0015519 functional_description:"Myo-inositol transporter 2 (AHRD V1 **** ITR2_SCHPO); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366,GO:0015519 NbS00005431g0005.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|156070795|gb|ABU45207.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*SWP) sp|Q9M065|PP352_ARATH (e_value=4e-166) Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1;; (*TAIR) AT4G36680.1 (e_value=3e-167) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17292479-17293717 REVERSE LENGTH=412;; (*ITAG) Solyc02g062910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:29425706-29426956 transcript_region:SL2.40ch02:29425706..29426956- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBF2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005431g0010.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.25|1|1|4|0|203; (*GB) gi|302319017|gb|ADL14698.1| (e_value=7e-50) WIPK, partial [Nicotiana obtusifolia];; (*SWP) sp|Q07176|MMK1_MEDSA (e_value=5e-45) Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1;; (*TAIR) AT2G43790.1 (e_value=5e-46) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc06g005170.2.1 (e_value=1e-49) genomic_reference:SL2.40ch06 gene_region:192235-195321 transcript_region:SL2.40ch06:192235..195321+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 3 (AHRD V1 **** Q84MI4_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00005431g0015.1 protein AED:0.58 eAED:0.61 QI:27|0.25|0.33|0.66|0.87|0.77|9|0|172; (*GB) gi|357470349|ref|XP_003605459.1| (e_value=7e-27) Splicing factor U2af large subunit B [Medicago truncatula];; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=3e-27) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT1G60900.1 (e_value=4e-16) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc02g062920.2.1 (e_value=6e-24) genomic_reference:SL2.40ch02 gene_region:29438210-29447611 transcript_region:SL2.40ch02:29438210..29447611+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00036264g0012.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.71|0.85|0.83|0.57|7|335|546; (*GB) gi|156763846|emb|CAO99125.1| (e_value=0.0) putative esterase [Nicotiana tabacum];; (*TAIR) AT5G13800.1 (e_value=0.0) | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-4454141 REVERSE LENGTH=484;; (*ITAG) Solyc01g088090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74688575-74691916 transcript_region:SL2.40ch01:74688575..74691916- go_terms:GO:0080124 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M5W5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080124 NbS00036264g0011.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|118; (*GB) gi|224115582|ref|XP_002332092.1| (e_value=4e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LKJ1|HIBC1_ARATH (e_value=2e-22) 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1;; (*TAIR) AT5G65940.1 (e_value=2e-23) | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | chr5:26376830-26379161 REVERSE LENGTH=378;; (*ITAG) Solyc05g032680.2.1 (e_value=2e-62) genomic_reference:SL2.40ch05 gene_region:43421776-43423564 transcript_region:SL2.40ch05:43421776..43423564- functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR)"; NbC25950798g0005.1 protein AED:0.70 eAED:0.94 QI:0|0|0|0.77|1|1|9|0|237; (*GB) gi|359477563|ref|XP_002283373.2| (e_value=7e-128) PREDICTED: dymeclin-like [Vitis vinifera];; (*SWP) sp|Q5ZLW3|DYM_CHICK (e_value=1e-47) Dymeclin OS=Gallus gallus GN=DYM PE=2 SV=1;; (*TAIR) AT1G04200.1 (e_value=5e-109) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dymeclin (InterPro:IPR019142); Has 395 Blast hits to 389 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 262; Fungi - 21; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:1109676-1113875 FORWARD LENGTH=732;; (*ITAG) Solyc09g082680.2.1 (e_value=1e-137) genomic_reference:SL2.40ch09 gene_region:63797368-63807682 transcript_region:SL2.40ch09:63797368..63807682+ go_terms:GO:0005515 functional_description:"Dymeclin (AHRD V1 ***- DYM_CHICK); contains Interpro domain(s) IPR019142 Dymeclin "; GO:0005515 NbC23882543g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=5e-35) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=3e-19) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*ITAG) Solyc06g008450.2.1 (e_value=1e-36) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00019849g0001.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|417; (*GB) gi|225429902|ref|XP_002281088.1| (e_value=2e-130) PREDICTED: F-box only protein 13-like [Vitis vinifera];; (*SWP) sp|Q9SMZ3|FBX13_ARATH (e_value=4e-111) F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2;; (*TAIR) AT4G33160.1 (e_value=3e-112) | Symbols: | F-box family protein | chr4:15994160-15995533 FORWARD LENGTH=457;; (*ITAG) Solyc08g067300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53582569-53583813 transcript_region:SL2.40ch08:53582569..53583813- go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9HCN7_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00019849g0006.1 protein AED:0.54 eAED:1.00 QI:88|0|0|0.5|0|0|2|56|11 NbS00013138g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|258; (*GB) gi|193290702|gb|ACF17659.1| (e_value=1e-127) putative 3-isopropylmalate dehydrogenase small subunit [Capsicum annuum];; (*SWP) sp|B5YHE5|LEUD_THEYD (e_value=7e-25) 3-isopropylmalate dehydratase small subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuD PE=3 SV=1;; (*TAIR) AT2G43090.1 (e_value=9e-99) | Symbols: | Aconitase/3-isopropylmalate dehydratase protein | chr2:17918957-17919712 FORWARD LENGTH=251;; (*ITAG) Solyc06g060790.1.1 (e_value=1e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35203918-35204688 transcript_region:SL2.40ch06:35203918..35204688- go_terms:GO:0016836 functional_description:"3-isopropylmalate dehydratase small subunit (AHRD V1 ***- Q9ZW85_ARATH); contains Interpro domain(s) IPR011827 3-isopropylmalate dehydratase, small subunit, subgroup "; GO:0016836 NbS00047104g0001.1 protein AED:0.43 eAED:0.45 QI:0|0.25|0.2|1|1|1|5|0|266; (*GB) gi|224115274|ref|XP_002332204.1| (e_value=6e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|Q568H3|MD2L2_DANRE (e_value=9e-20) Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio GN=mad2l2 PE=2 SV=1;; (*TAIR) AT1G16590.1 (e_value=6e-86) | Symbols: REV7, ATREV7 | DNA-binding HORMA family protein | chr1:5673886-5674890 FORWARD LENGTH=215;; (*ITAG) Solyc09g098220.2.1 (e_value=3e-122) genomic_reference:SL2.40ch09 gene_region:67348049-67349611 transcript_region:SL2.40ch09:67348049..67349611+ go_terms:GO:0005515 functional_description:"Mitotic spindle checkpoint component mad2 (AHRD V1 ***- MAD2_SCHPO); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0005515 NbS00047104g0008.1 protein AED:0.43 eAED:0.54 QI:0|0|0|1|1|1|2|0|93; (*ITAG) Solyc09g098210.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67341278-67344165 transcript_region:SL2.40ch09:67341278..67344165+ go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00047104g0004.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|1|1|2|0|127 NbS00047104g0002.1 protein AED:0.76 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|363; (*GB) gi|224115270|ref|XP_002332203.1| (e_value=8e-172) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79120.1 (e_value=1e-153) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:29767314-29768555 REVERSE LENGTH=413;; (*ITAG) Solyc01g079430.2.1 (e_value=3e-36) genomic_reference:SL2.40ch01 gene_region:71010601-71012028 transcript_region:SL2.40ch01:71010601..71012028- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00025154g0009.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|0|181; (*GB) gi|158564576|gb|ABW74476.1| (e_value=2e-39) unknown [Paeonia suffruticosa];; (*TAIR) AT1G68490.1 (e_value=2e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc04g007220.2.1 (e_value=3e-65) genomic_reference:SL2.40ch04 gene_region:913039-915859 transcript_region:SL2.40ch04:913039..915859- functional_description:"Unknown Protein (AHRD V1)"; NbS00025154g0012.1 protein AED:0.47 eAED:0.53 QI:0|0|0|0.5|0.33|0.5|4|0|163; (*ITAG) Solyc00g212260.1.1 (e_value=1e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19159730-19164604 transcript_region:SL2.40ch00:19159730..19164604+ functional_description:"GH3 family protein (AHRD V1 *-*- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; NbS00025154g0011.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.33|1|0.66|3|0|110 NbS00055998g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|151; (*ITAG) Solyc08g082380.1.1 (e_value=6e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62374897-62375325 transcript_region:SL2.40ch08:62374897..62375325- functional_description:"Unknown Protein (AHRD V1)"; NbS00011461g0012.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|0.5|1|3|0|152; (*GB) gi|257831437|gb|ACV71019.1| (e_value=6e-67) UPA19 [Capsicum annuum];; (*SWP) sp|Q6PDY2|AEDO_MOUSE (e_value=3e-11) 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2;; (*TAIR) AT5G15120.1 (e_value=4e-50) | Symbols: | Protein of unknown function (DUF1637) | chr5:4898814-4900351 FORWARD LENGTH=293;; (*ITAG) Solyc02g067440.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:32204041-32207715 transcript_region:SL2.40ch02:32204041..32207715- go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B4F886_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00011461g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|0.66|1|1|3|0|477; (*GB) gi|30013667|gb|AAP03876.1| (e_value=4e-135) Avr9/Cf-9 rapidly elicited protein 126 [Nicotiana tabacum];; (*SWP) sp|Q9LXG8|WRK72_ARATH (e_value=1e-52) Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1;; (*TAIR) AT5G15130.1 (e_value=9e-54) | Symbols: WRKY72, ATWRKY72 | WRKY DNA-binding protein 72 | chr5:4904426-4906879 FORWARD LENGTH=548;; (*ITAG) Solyc02g067430.2.1 (e_value=5e-146) genomic_reference:SL2.40ch02 gene_region:32190832-32193017 transcript_region:SL2.40ch02:32190832..32193017- go_terms:GO:0045449 functional_description:"WRKY transcription factor 73 (AHRD V1 *-*- Q6IEK8_ORYSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00011461g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.75|1|0.85|0.75|8|0|821; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=0.0) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=2e-163) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc03g058890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:23968073-23970799 transcript_region:SL2.40ch03:23968073..23970799+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LQ55_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00011461g0014.1 protein AED:0.55 eAED:0.57 QI:12|0|0.33|0.66|0.2|0.33|6|45|166; (*GB) gi|255572799|ref|XP_002527332.1| (e_value=1e-18) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q8GU89|PDR4_ORYSJ (e_value=9e-18) Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=8e-19) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc05g018510.2.1 (e_value=7e-25) genomic_reference:SL2.40ch05 gene_region:22096967-22107681 transcript_region:SL2.40ch05:22096967..22107681+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 32 (AHRD V1 ***- AB32G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00013144g0003.1 protein AED:0.04 eAED:0.04 QI:146|1|1|1|1|1|8|317|284; (*GB) gi|224120374|ref|XP_002331032.1| (e_value=2e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL54|DNAJ6_ARATH (e_value=6e-116) Chaperone protein dnaJ 6 OS=Arabidopsis thaliana GN=ATJ6 PE=1 SV=1;; (*TAIR) AT5G06910.1 (e_value=4e-117) | Symbols: ATJ6 | J-domain protein 6 | chr5:2140598-2142525 FORWARD LENGTH=284;; (*ITAG) Solyc10g079090.1.1 (e_value=9e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60035807-60039291 transcript_region:SL2.40ch10:60035807..60039291+ go_terms:GO:0030544 functional_description:"Chaperone protein dnaJ 6 (AHRD V1 ***- B6TT74_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544 NbS00056058g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.25|1|0.66|0.75|4|344|143 NbS00056058g0005.1 protein AED:0.62 eAED:0.71 QI:0|0.33|0|0.75|0.66|0.5|4|0|108; (*GB) gi|296083579|emb|CBI23570.3| (e_value=7e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G25150.2 (e_value=2e-28) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc06g007780.2.1 (e_value=1e-50) genomic_reference:SL2.40ch06 gene_region:1728885-1733953 transcript_region:SL2.40ch06:1728885..1733953+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00013543g0007.1 protein AED:0.06 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.66|3|0|305; (*GB) gi|225453610|ref|XP_002267383.1| (e_value=2e-121) PREDICTED: NAC domain-containing protein 43-like [Vitis vinifera];; (*SWP) sp|Q84WP6|NAC43_ARATH (e_value=3e-105) NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2;; (*TAIR) AT2G46770.1 (e_value=2e-106) | Symbols: NST1, ANAC043 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr2:19220917-19222822 REVERSE LENGTH=365;; (*ITAG) Solyc10g005010.2.1 (e_value=2e-136) genomic_reference:SL2.40ch10 gene_region:11300-12389 transcript_region:SL2.40ch10:11300..12389- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRQ5_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00013543g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|255548019|ref|XP_002515066.1| (e_value=8e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G61920.1 (e_value=5e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22932638-22933201 REVERSE LENGTH=187;; (*ITAG) Solyc10g005020.2.1 (e_value=3e-97) genomic_reference:SL2.40ch10 gene_region:21051-22778 transcript_region:SL2.40ch10:21051..22778- functional_description:"Unknown Protein (AHRD V1)"; NbS00015518g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.4|0.8|0.75|0.8|5|449|212; (*GB) gi|225447109|ref|XP_002273680.1| (e_value=5e-141) PREDICTED: BAH and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera];; (*TAIR) AT4G22140.2 (e_value=2e-127) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc05g042030.2.1 (e_value=3e-147) genomic_reference:SL2.40ch05 gene_region:53639308-53647040 transcript_region:SL2.40ch05:53639308..53647040+ go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00032885g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|0.75|0.66|0.5|4|0|238; (*ITAG) Solyc12g036870.1.1 (e_value=3e-104) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:33008773-33009822 transcript_region:SL2.40ch12:33008773..33009822+ functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 *-*- Q9FFJ8_ARATH)"; NbS00054750g0003.1 protein AED:0.23 eAED:0.23 QI:171|1|1|1|0.66|0.5|10|534|566; (*GB) gi|255561959|ref|XP_002521988.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G28910.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:10930633-10932575 REVERSE LENGTH=535;; (*ITAG) Solyc06g036640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:23689659-23694752 transcript_region:SL2.40ch06:23689659..23694752- functional_description:"Coatomer (AHRD V1 ***- Q6K992_ORYSJ)"; NbS00059269g0007.1 protein AED:0.03 eAED:0.03 QI:402|0.85|0.87|1|0.85|0.75|8|1097|728; (*GB) gi|225455320|ref|XP_002271917.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245187 [Vitis vinifera];; (*SWP) sp|Q498F0|WDR44_XENLA (e_value=8e-50) WD repeat-containing protein 44 OS=Xenopus laevis GN=wdr44 PE=2 SV=1;; (*TAIR) AT5G24320.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc03g082870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46322576-46326439 transcript_region:SL2.40ch03:46322576..46326439+ go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7MSZ0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00059269g0009.1 protein AED:0.20 eAED:0.20 QI:309|0.5|0.33|0.66|0|0.66|3|0|69 NbS00059269g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|573; (*GB) gi|253740260|gb|ACT34764.1| (e_value=0.0) subtilisin-like protease preproenzyme [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-134) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=3e-149) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc04g078740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61000501-61003148 transcript_region:SL2.40ch04:61000501..61003148+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q38708_ALNGL); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00059269g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|253740260|gb|ACT34764.1| (e_value=2e-80) subtilisin-like protease preproenzyme [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-30) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=8e-37) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc04g078740.2.1 (e_value=4e-81) genomic_reference:SL2.40ch04 gene_region:61000501-61003148 transcript_region:SL2.40ch04:61000501..61003148+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q38708_ALNGL); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00038419g0006.1 protein AED:0.05 eAED:0.05 QI:117|1|0.90|1|0.8|0.81|11|154|483; (*GB) gi|1064929|emb|CAA63543.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q9C6Y3|CCA11_ARATH (e_value=3e-167) Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1;; (*TAIR) AT1G44110.1 (e_value=3e-168) | Symbols: CYCA1;1 | Cyclin A1;1 | chr1:16775035-16777182 REVERSE LENGTH=460;; (*ITAG) Solyc11g005090.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:69680-73275 transcript_region:SL2.40ch11:69680..73275- go_terms:GO:0005634 functional_description:"Cyclin A1 (AHRD V1 ***- Q9XGI5_SOLLC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00038419g0007.1 protein AED:0.00 eAED:0.03 QI:0|0|0|1|0|0|2|0|762; (*GB) gi|297845142|ref|XP_002890452.1| (e_value=0.0) hypothetical protein ARALYDRAFT_472406 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q3A097|TOLB_PELCD (e_value=2e-15) Protein TolB OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tolB PE=3 SV=1;; (*TAIR) AT1G21680.1 (e_value=0.0) | Symbols: | DPP6 N-terminal domain-like protein | chr1:7613028-7615148 FORWARD LENGTH=706;; (*ITAG) Solyc11g005080.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:67045-69072 transcript_region:SL2.40ch11:67045..69072+ functional_description:"Protein tolB (AHRD V1 *-*- D5MJZ0_9BACT); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbC26082683g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=2e-71) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9FI40|BAHD1_ARATH (e_value=3e-46) BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1;; (*TAIR) AT3G26040.1 (e_value=4e-62) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=3e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00000997g0114.1 protein AED:0.16 eAED:0.16 QI:0|0.2|0|0.66|0.6|0.5|6|0|366 NbS00000997g0115.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.25|1|0.33|0.25|4|0|102 NbS00000997g0103.1 protein AED:0.46 eAED:0.54 QI:0|0|0|0.16|1|1|12|0|859 NbS00000997g0113.1 protein AED:0.09 eAED:0.18 QI:103|0|0.33|0.66|0.5|0.66|3|0|37 NbS00022928g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|245; (*GB) gi|40644130|emb|CAC83765.1| (e_value=1e-135) allene oxide cyclase [Nicotiana tabacum];; (*SWP) sp|Q9LS01|AOC3_ARATH (e_value=1e-82) Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1;; (*TAIR) AT3G25780.1 (e_value=9e-84) | Symbols: AOC3 | allene oxide cyclase 3 | chr3:9409362-9410409 FORWARD LENGTH=258;; (*ITAG) Solyc02g085730.2.1 (e_value=8e-119) genomic_reference:SL2.40ch02 gene_region:43109536-43111867 transcript_region:SL2.40ch02:43109536..43111867+ go_terms:GO:0046423 functional_description:"Allene oxide cyclase (AHRD V1 **** Q9LEG5_SOLLC); contains Interpro domain(s) IPR009410 Allene oxide cyclase "; GO:0046423 NbS00008806g0002.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|1|2|104|41; (*ITAG) Solyc01g106810.2.1 (e_value=6e-19) genomic_reference:SL2.40ch01 gene_region:86327276-86330864 transcript_region:SL2.40ch01:86327276..86330864- functional_description:"Unknown Protein (AHRD V1)"; NbS00010523g0001.1 protein AED:0.13 eAED:0.14 QI:0|0.80|0.68|1|1|1|22|0|1481; (*GB) gi|75331994|sp|Q949G3.1|PDR1_NICPL (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NpPDR1;; (*SWP) sp|Q949G3|PDR1_NICPL (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66270226-66277538 transcript_region:SL2.40ch09:66270226..66277538+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00009550g0008.1 protein AED:0.34 eAED:0.39 QI:526|0.75|0.8|1|0.5|0.6|5|0|97; (*GB) gi|225459158|ref|XP_002285712.1| (e_value=3e-36) PREDICTED: bet1-like protein At4g14600 [Vitis vinifera];; (*SWP) sp|Q8VXX9|BETL1_ARATH (e_value=1e-33) Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1;; (*TAIR) AT4G14600.1 (e_value=8e-35) | Symbols: | Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137;; (*ITAG) Solyc04g074940.2.1 (e_value=1e-50) genomic_reference:SL2.40ch04 gene_region:58422233-58425274 transcript_region:SL2.40ch04:58422233..58425274- go_terms:GO:0005484 functional_description:"Bet1-like protein At4g14600 (AHRD V1 **-- BETL1_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00009550g0009.1 protein AED:0.41 eAED:1.00 QI:0|0|0|1|1|1|2|0|149 NbS00043685g0004.1 protein AED:0.24 eAED:0.24 QI:129|1|0.81|1|0.6|0.63|11|0|368; (*GB) gi|359476820|ref|XP_002265520.2| (e_value=2e-160) PREDICTED: MLO17 protein [Vitis vinifera];; (*SWP) sp|O23693|MLO4_ARATH (e_value=5e-105) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=3e-106) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc02g083720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41596474-41602413 transcript_region:SL2.40ch02:41596474..41602413- go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00062085g0003.1 protein AED:0.29 eAED:0.33 QI:0|0.75|0.6|1|1|1|5|0|244; (*GB) gi|195970356|gb|ACG60665.1| (e_value=1e-113) basic helix-loop-helix protein [Nicotiana tabacum];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=6e-93) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=4e-94) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc10g006510.2.1 (e_value=6e-120) genomic_reference:SL2.40ch10 gene_region:1086687-1090586 transcript_region:SL2.40ch10:1086687..1090586- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00019202g0010.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|399; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=0.0) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=1e-153) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00019202g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|225459249|ref|XP_002285764.1| (e_value=4e-148) PREDICTED: uncharacterized protein LOC100253906 [Vitis vinifera];; (*TAIR) AT4G08950.1 (e_value=2e-112) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58000263-58001192 transcript_region:SL2.40ch04:58000263..58001192- functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00019202g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.25|1|1|1|4|0|263; (*GB) gi|10945669|gb|AAG24642.1|AF308737_1 (e_value=1e-65) J1P [Daucus carota];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-60) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=6e-55) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=1e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00001438g0003.1 protein AED:0.25 eAED:0.26 QI:0|1|0.5|1|1|1|4|0|526; (*GB) gi|255561576|ref|XP_002521798.1| (e_value=0.0) Patellin-5, putative [Ricinus communis];; (*SWP) sp|Q56Z59|PATL3_ARATH (e_value=0.0) Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2;; (*TAIR) AT1G72160.1 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:27153823-27155609 REVERSE LENGTH=490;; (*ITAG) Solyc11g027880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:15706357-15709426 transcript_region:SL2.40ch11:15706357..15709426+ go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- SFH5_YARLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00001438g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=2e-13) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc05g021350.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00000681g0007.1 protein AED:0.27 eAED:0.27 QI:10|1|1|1|1|1|6|255|416; (*GB) gi|24745927|dbj|BAC23045.1| (e_value=0.0) monooxygenase [Solanum tuberosum];; (*SWP) sp|Q9F131|3HBH1_PSEAC (e_value=1e-17) 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1;; (*TAIR) AT5G05320.1 (e_value=7e-125) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:1575093-1576679 REVERSE LENGTH=406;; (*ITAG) Solyc12g013690.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4532510-4535243 transcript_region:SL2.40ch12:4532510..4535243- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00000681g0006.1 protein AED:0.29 eAED:0.30 QI:89|0.75|0.88|1|0.75|0.77|9|282|301; (*GB) gi|358248282|ref|NP_001239854.1| (e_value=7e-62) uncharacterized protein LOC100818986 [Glycine max];; (*TAIR) AT1G20220.1 (e_value=4e-50) | Symbols: | Alba DNA/RNA-binding protein | chr1:7005090-7007285 REVERSE LENGTH=315;; (*ITAG) Solyc04g081880.2.1 (e_value=2e-51) genomic_reference:SL2.40ch04 gene_region:63335224-63339615 transcript_region:SL2.40ch04:63335224..63339615- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_RAT); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00003078g0019.1 protein AED:0.11 eAED:0.11 QI:0|1|0.92|1|0.75|0.84|13|0|416; (*GB) gi|359490377|ref|XP_002263340.2| (e_value=0.0) PREDICTED: flap endonuclease GEN-like 2-like [Vitis vinifera];; (*SWP) sp|Q9M2Z3|GENL2_ARATH (e_value=0.0) Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2 SV=2;; (*TAIR) AT3G48900.2 (e_value=0.0) | Symbols: | single-stranded DNA endonuclease family protein | chr3:18131854-18136239 FORWARD LENGTH=600;; (*ITAG) Solyc03g025900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7694511-7700542 transcript_region:SL2.40ch03:7694511..7700542- go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-*- A8NTE4_COPC7); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00003078g0014.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0|1|2|25|81; (*GB) gi|297745210|emb|CBI40290.3| (e_value=1e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G00585.1 (e_value=2e-43) | Symbols: | unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:251157-252284 REVERSE LENGTH=88;; (*ITAG) Solyc03g025910.2.1 (e_value=5e-46) genomic_reference:SL2.40ch03 gene_region:7702186-7707084 transcript_region:SL2.40ch03:7702186..7707084- functional_description:"Unknown Protein (AHRD V1)"; NbS00003078g0021.1 protein AED:0.17 eAED:0.17 QI:355|0.78|0.73|0.93|0.78|0.93|15|0|1176; (*GB) gi|49615728|gb|AAT67046.1| (e_value=0.0) DNA mismatch repair protein [Petunia x hybrida];; (*SWP) sp|O65607|MSH3_ARATH (e_value=0.0) DNA mismatch repair protein Msh3 OS=Arabidopsis thaliana GN=MSH3 PE=2 SV=2;; (*TAIR) AT4G25540.1 (e_value=0.0) | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081;; (*ITAG) Solyc03g025890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7671920-7692944 transcript_region:SL2.40ch03:7671920..7692944+ go_terms:GO:0032357,GO:0032137 functional_description:"DNA mismatch repair protein mutS (AHRD V1 **** B0K9L5_THEP3); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0032357,GO:0032137 NbS00003078g0004.1 protein AED:0.22 eAED:0.22 QI:2775|1|0.5|1|1|1|2|0|304; (*GB) gi|255539483|ref|XP_002510806.1| (e_value=1e-177) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2Z5|FBL53_ARATH (e_value=2e-145) F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1;; (*TAIR) AT3G48880.2 (e_value=1e-146) | Symbols: | RNI-like superfamily protein | chr3:18127873-18129008 FORWARD LENGTH=309;; (*ITAG) Solyc03g025920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7714580-7716038 transcript_region:SL2.40ch03:7714580..7716038+ functional_description:"F-box family protein (AHRD V1 ***- D7LS19_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012208g0006.1 protein AED:0.29 eAED:0.29 QI:0|0.81|0.83|1|0.90|0.83|12|337|485; (*GB) gi|224129218|ref|XP_002320530.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P94026|RBCMT_TOBAC (e_value=8e-21) Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1;; (*TAIR) AT3G07670.1 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr3:2451651-2454617 FORWARD LENGTH=504;; (*ITAG) Solyc07g045310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55728979-55739148 transcript_region:SL2.40ch07:55728979..55739148+ go_terms:GO:0009507 functional_description:"SET domain-containing protein (AHRD V1 ***- D7L6N3_ARALY); contains Interpro domain(s) IPR011192 Rubisco methyltransferase "; GO:0009507 NbS00012208g0003.1 protein AED:0.15 eAED:0.48 QI:0|0|0|1|1|1|2|0|91; (*ITAG) Solyc08g005060.2.1 (e_value=1e-18) genomic_reference:SL2.40ch08 gene_region:48135-51527 transcript_region:SL2.40ch08:48135..51527- go_terms:GO:0050897 functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- Q9LEH5_HORVU)"; GO:0050897 NbS00012208g0125.1 protein AED:0.09 eAED:0.09 QI:249|1|1|1|1|1|3|420|173 NbS00012208g0124.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|6|236|262 NbS00012208g0131.1 protein AED:0.22 eAED:0.36 QI:299|0|0.16|1|0|0.16|6|0|589 NbS00012208g0122.1 protein AED:0.69 eAED:0.70 QI:0|0|0|0.5|1|1|2|0|59 NbS00012208g0110.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.4|0.8|1|1|5|0|247 NbS00012208g0127.1 protein AED:0.24 eAED:0.24 QI:319|0.90|0.91|1|1|1|12|456|582 NbS00032372g0010.1 protein AED:0.10 eAED:0.17 QI:0|0.25|0|0.8|0.5|0.6|5|0|401; (*GB) gi|225445939|ref|XP_002263886.1| (e_value=9e-140) PREDICTED: APO protein 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FH50|APO3_ARATH (e_value=2e-78) APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1;; (*TAIR) AT5G61930.2 (e_value=2e-79) | Symbols: APO3 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:24866230-24867665 REVERSE LENGTH=402;; (*ITAG) Solyc09g009400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2840443-2842868 transcript_region:SL2.40ch09:2840443..2842868- functional_description:"APO protein 1, chloroplastic (AHRD V1 ***- APO1_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00032372g0009.1 protein AED:0.22 eAED:0.22 QI:92|0.9|0.72|1|0.8|0.81|11|329|452; (*GB) gi|50400860|sp|Q43497.1|MDAR_SOLLC (e_value=0.0) RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase;; (*SWP) sp|Q43497|MDAR_SOLLC (e_value=0.0) Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1;; (*TAIR) AT3G52880.1 (e_value=0.0) | Symbols: ATMDAR1, MDAR1 | monodehydroascorbate reductase 1 | chr3:19601477-19604366 REVERSE LENGTH=434;; (*ITAG) Solyc09g009390.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2835367-2840425 transcript_region:SL2.40ch09:2835367..2840425+ go_terms:GO:0016656 functional_description:"Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0016656 NbS00032372g0001.1 protein AED:0.17 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|255575685|ref|XP_002528742.1| (e_value=1e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G52740.1 (e_value=2e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546446-19546868 REVERSE LENGTH=140;; (*ITAG) Solyc09g009420.1.1 (e_value=4e-49) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:2856789-2857253 transcript_region:SL2.40ch09:2856789..2857253- functional_description:"Unknown Protein (AHRD V1)"; NbS00014941g0006.1 protein AED:0.16 eAED:0.17 QI:239|0.82|0.70|1|0.73|0.75|24|320|1403; (*GB) gi|296086345|emb|CBI31934.3| (e_value=5e-161) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G03150.1 (e_value=3e-85) | Symbols: emb1579 | ATP/GTP-binding protein family | chr2:952313-959004 FORWARD LENGTH=1340;; (*ITAG) Solyc04g008680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2318621-2333205 transcript_region:SL2.40ch04:2318621..2333205+ go_terms:GO:0005509 functional_description:"Cell division cycle and apoptosis regulator protein 1 (AHRD V1 *--- B0XGS6_CULQU); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00014941g0003.1 protein AED:0.63 eAED:0.72 QI:35|0|0|0.66|1|0.66|3|0|50 NbS00034618g0001.1 protein AED:0.10 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|158; (*ITAG) Solyc11g007520.1.1 (e_value=4e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1777779-1778240 transcript_region:SL2.40ch11:1777779..1778240+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010065g0006.1 protein AED:0.14 eAED:0.14 QI:148|1|1|1|0.71|0.66|15|323|520; (*GB) gi|225447129|ref|XP_002274603.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 1 [Vitis vinifera];; (*SWP) sp|Q9SHZ3|NAT1_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1;; (*TAIR) AT2G05760.1 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr2:2180978-2183710 FORWARD LENGTH=520;; (*ITAG) Solyc07g049320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56900908-56905495 transcript_region:SL2.40ch07:56900908..56905495+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9IAJ7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00013496g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.88|0.8|1|0.88|0.8|10|0|512; (*GB) gi|225446724|ref|XP_002278150.1| (e_value=0.0) PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|E0CTY1|GATA_VITVI (e_value=0.0) Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATA PE=3 SV=1;; (*TAIR) AT3G25660.1 (e_value=0.0) | Symbols: | Amidase family protein | chr3:9339640-9342044 REVERSE LENGTH=537;; (*ITAG) Solyc10g007840.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2047380-2052961 transcript_region:SL2.40ch10:2047380..2052961- go_terms:GO:0050567 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A8YF31_MICAE); contains Interpro domain(s) IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit "; GO:0050567 NbS00013496g0002.1 protein AED:0.57 eAED:0.76 QI:0|0|0|0.6|1|1|5|0|121 NbS00013496g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|3|0|105; (*GB) gi|343424521|gb|AEM24937.1| (e_value=7e-46) thionin-like protein [Nicotiana tabacum];; (*ITAG) Solyc10g007870.2.1 (e_value=1e-20) genomic_reference:SL2.40ch10 gene_region:2075626-2077518 transcript_region:SL2.40ch10:2075626..2077518+ functional_description:"Tumor-related protein (AHRD V1 ***- Q40447_9SOLA)"; NbS00057002g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|0.77|0.8|10|603|384; (*GB) gi|302143834|emb|CBI22695.3| (e_value=4e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LF97|ASK21_ARATH (e_value=1e-109) SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1;; (*TAIR) AT3G61415.2 (e_value=1e-111) | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22723052-22725577 REVERSE LENGTH=349;; (*ITAG) Solyc03g025420.2.1 (e_value=9e-160) genomic_reference:SL2.40ch03 gene_region:7222074-7228283 transcript_region:SL2.40ch03:7222074..7228283+ go_terms:GO:0004842 functional_description:"SCF ubiquitin ligase skp1 component (AHRD V1 *--* D3TMR7_GLOMM); contains Interpro domain(s) IPR001232 SKP1 component "; GO:0004842 NbS00057002g0006.1 protein AED:0.21 eAED:0.25 QI:3|0.88|0.8|1|0.88|0.8|10|463|674; (*GB) gi|225464505|ref|XP_002272128.1| (e_value=1e-178) PREDICTED: uncharacterized protein LOC100262848 [Vitis vinifera];; (*TAIR) AT4G25610.1 (e_value=7e-115) | Symbols: | C2H2-like zinc finger protein | chr4:13063801-13066860 FORWARD LENGTH=586;; (*ITAG) Solyc03g025440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7231513-7236551 transcript_region:SL2.40ch03:7231513..7236551- go_terms:GO:0003676 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MFZ1_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676 NbS00005385g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|154; (*GB) gi|255568643|ref|XP_002525295.1| (e_value=1e-24) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092190.1.1 (e_value=7e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47935076-47935537 transcript_region:SL2.40ch02:47935076..47935537+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016972 Uncharacterised conserved protein UCP031279 "; NbS00005385g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|255568643|ref|XP_002525295.1| (e_value=6e-45) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092190.1.1 (e_value=5e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47935076-47935537 transcript_region:SL2.40ch02:47935076..47935537+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016972 Uncharacterised conserved protein UCP031279 "; NbS00005385g0016.1 protein AED:0.37 eAED:0.87 QI:0|0|0|1|1|1|4|0|205 NbS00022311g0013.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|442; (*GB) gi|224109096|ref|XP_002315082.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SA38|OCT3_ARATH (e_value=0.0) Organic cation/carnitine transporter 3 OS=Arabidopsis thaliana GN=OCT3 PE=2 SV=1;; (*TAIR) AT1G16390.1 (e_value=0.0) | Symbols: ATOCT3, 3-Oct | organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518;; (*ITAG) Solyc05g053860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63042284-63044388 transcript_region:SL2.40ch05:63042284..63044388+ go_terms:GO:0005351,GO:0015226 functional_description:"Solute carrier family 22 member 5 (Predicted) (AHRD V1 ***- B3RF59_SORAR); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015226 NbS00022311g0011.1 protein AED:0.19 eAED:0.33 QI:0|0.5|0.4|1|0.5|0.2|5|0|253; (*GB) gi|224128910|ref|XP_002320451.1| (e_value=2e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43110.1 (e_value=7e-61) | Symbols: | unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr2:17922067-17924291 FORWARD LENGTH=288;; (*ITAG) Solyc05g053880.2.1 (e_value=3e-77) genomic_reference:SL2.40ch05 gene_region:63058550-63062825 transcript_region:SL2.40ch05:63058550..63062825+ functional_description:"cDNA FLJ42396 fis clone ASTRO2001107 (AHRD V1 *-*- B3KW72_HUMAN)"; NbS00022311g0012.1 protein AED:0.08 eAED:0.08 QI:212|1|1|1|0.7|0.72|11|173|446; (*GB) gi|224112337|ref|XP_002316157.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=4e-147) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT1G79380.1 (e_value=2e-170) | Symbols: | Ca(2)-dependent phospholipid-binding protein (Copine) family | chr1:29860812-29863023 FORWARD LENGTH=401;; (*ITAG) Solyc05g053870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63050870-63056412 transcript_region:SL2.40ch05:63050870..63056412- go_terms:GO:0008270 functional_description:"Copine I-like protein (AHRD V1 ***- Q6YYC5_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0008270 NbS00022311g0003.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|370; (*GB) gi|359477998|ref|XP_003632051.1| (e_value=1e-148) PREDICTED: UDP-glycosyltransferase 92A1-like [Vitis vinifera];; (*SWP) sp|Q9LXV0|U92A1_ARATH (e_value=2e-85) UDP-glycosyltransferase 92A1 OS=Arabidopsis thaliana GN=UGT92A1 PE=2 SV=1;; (*TAIR) AT5G12890.1 (e_value=2e-86) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4069658-4071124 REVERSE LENGTH=488;; (*ITAG) Solyc05g053890.1.1 (e_value=4e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63063554-63065233 transcript_region:SL2.40ch05:63063554..63065233- go_terms:GO:0080044 functional_description:"Glucosyltransferase-like protein (AHRD V1 *-** Q9LXV0_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00023999g0008.1 protein AED:0.43 eAED:0.52 QI:0|0|0.5|1|1|1|4|22|106; (*GB) gi|255576088|ref|XP_002528939.1| (e_value=2e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35736.2 (e_value=4e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). | chr2:15023084-15023254 REVERSE LENGTH=56;; (*ITAG) Solyc08g078790.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59675360-59675533 transcript_region:SL2.40ch08:59675360..59675533- functional_description:"Unknown Protein (AHRD V1)"; NbS00023999g0007.1 protein AED:0.26 eAED:0.35 QI:0|0|0|1|1|1|3|0|585; (*GB) gi|224071537|ref|XP_002303507.1| (e_value=5e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT5G47580.1 (e_value=2e-87) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19294948-19297194 REVERSE LENGTH=748;; (*ITAG) Solyc08g078780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59666621-59670212 transcript_region:SL2.40ch08:59666621..59670212+ functional_description:"AT5g47580/MNJ7_17 (AHRD V1 ***- Q9FGJ9_ARATH)"; NbS00035173g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|77; (*GB) gi|255559619|ref|XP_002520829.1| (e_value=3e-37) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g050870.2.1 (e_value=1e-45) genomic_reference:SL2.40ch06 gene_region:30207438-30207966 transcript_region:SL2.40ch06:30207438..30207966- functional_description:"Hypoxia induced protein conserved region containing protein expressed (AHRD V1 ***- Q2QYP0_ORYSJ)"; NbS00057738g0006.1 protein AED:0.28 eAED:0.29 QI:173|0.5|0.66|1|0.5|0.66|3|223|127; (*GB) gi|350537967|ref|NP_001233808.1| (e_value=5e-59) dihydroneopterin aldolase [Solanum lycopersicum];; (*SWP) sp|Q9SF23|FOLB1_ARATH (e_value=5e-42) Dihydroneopterin aldolase OS=Arabidopsis thaliana GN=FOLB1 PE=1 SV=1;; (*TAIR) AT3G11750.1 (e_value=4e-43) | Symbols: FOLB1 | Dihydroneopterin aldolase | chr3:3715071-3715904 REVERSE LENGTH=146;; (*ITAG) Solyc10g079830.1.1 (e_value=9e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60640242-60641421 transcript_region:SL2.40ch10:60640242..60641421+ go_terms:GO:0005515,GO:0004150 functional_description:"Dihydroneopterin aldolase (AHRD V1 **** Q6TFM2_SOLLC); contains Interpro domain(s) IPR006156 Dihydroneopterin aldolase family "; GO:0005515,GO:0004150 NbS00025421g0004.1 protein AED:0.19 eAED:0.19 QI:73|1|1|1|1|1|3|303|307; (*GB) gi|224079209|ref|XP_002305794.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20670.1 (e_value=3e-70) | Symbols: | Protein of unknown function (DUF506) | chr2:8912163-8913472 REVERSE LENGTH=294;; (*ITAG) Solyc03g006410.2.1 (e_value=1e-152) genomic_reference:SL2.40ch03 gene_region:1009242-1011978 transcript_region:SL2.40ch03:1009242..1011978+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00055940g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.33|1|0.5|0.66|3|0|89; (*GB) gi|225427991|ref|XP_002277796.1| (e_value=3e-42) PREDICTED: actin-depolymerizing factor 5 [Vitis vinifera];; (*SWP) sp|Q9ZNT3|ADF5_ARATH (e_value=3e-38) Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1;; (*TAIR) AT2G16700.1 (e_value=2e-39) | Symbols: ADF5, ATADF5 | actin depolymerizing factor 5 | chr2:7244717-7245467 FORWARD LENGTH=143;; (*ITAG) Solyc01g111380.2.1 (e_value=5e-42) genomic_reference:SL2.40ch01 gene_region:89410321-89411406 transcript_region:SL2.40ch01:89410321..89411406+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 5 (AHRD V1 **** A1XJ48_GOSHI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00004508g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|61|442; (*GB) gi|347953954|gb|AEP33597.1| (e_value=0.0) CBL-interacting protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9LZW4|CIPKE_ARATH (e_value=2e-165) CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1;; (*TAIR) AT5G01820.1 (e_value=2e-166) | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 | serine/threonine protein kinase 1 | chr5:313423-314751 REVERSE LENGTH=442;; (*ITAG) Solyc09g018280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14009433-14010764 transcript_region:SL2.40ch09:14009433..14010764+ go_terms:GO:0004683 functional_description:"Calcium/calmodulin-dependent protein kinase type 1 (AHRD V1 *-** KCC1A_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00004508g0011.1 protein AED:0.25 eAED:0.27 QI:360|0.6|0.65|0.96|0.6|0.57|26|107|918; (*GB) gi|225439600|ref|XP_002265851.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265424 [Vitis vinifera];; (*SWP) sp|Q3A2G9|DDL_PELCD (e_value=3e-12) D-alanine--D-alanine ligase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ddl PE=3 SV=1;; (*TAIR) AT3G08840.2 (e_value=0.0) | Symbols: | D-alanine--D-alanine ligase family | chr3:2679648-2686157 REVERSE LENGTH=937;; (*ITAG) Solyc10g085390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63913446-63922066 transcript_region:SL2.40ch10:63913446..63922066- go_terms:GO:0005524,GO:0005618,GO:0009252 functional_description:"D-alanine--D-alanine ligase family (AHRD V1 ***- D7L782_ARALY); contains Interpro domain(s) IPR013817 Pre-ATP-grasp fold "; GO:0005524,GO:0005618,GO:0009252 NbS00004508g0013.1 protein AED:0.18 eAED:0.18 QI:308|1|1|1|1|1|2|366|213; (*GB) gi|388504720|gb|AFK40426.1| (e_value=4e-107) unknown [Lotus japonicus];; (*SWP) sp|Q9LZX1|LOR15_ARATH (e_value=1e-94) Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1;; (*TAIR) AT5G01750.2 (e_value=8e-96) | Symbols: | Protein of unknown function (DUF567) | chr5:290034-291109 FORWARD LENGTH=217;; (*ITAG) Solyc10g085420.1.1 (e_value=2e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63936550-63937877 transcript_region:SL2.40ch10:63936550..63937877+ functional_description:"Os03g0816700 protein (Fragment) (AHRD V1 ***- Q0DMC9_ORYSJ); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00004508g0002.1 protein AED:0.38 eAED:0.38 QI:0|1|0.8|1|1|1|5|191|252; (*GB) gi|224087843|ref|XP_002308246.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT3G51730.1 (e_value=4e-56) | Symbols: | saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213;; (*ITAG) Solyc10g085430.1.1 (e_value=6e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63938424-63944280 transcript_region:SL2.40ch10:63938424..63944280+ go_terms:GO:0006629 functional_description:"Saposin (Fragment) (AHRD V1 *--- B8RJD6_CULTA); contains Interpro domain(s) IPR011001 Saposin-like "; GO:0006629 NbS00007265g0011.1 protein AED:0.28 eAED:0.28 QI:377|1|1|1|0.8|0.83|6|196|492; (*GB) gi|359492495|ref|XP_002283801.2| (e_value=3e-80) PREDICTED: uncharacterized protein LOC100245507 [Vitis vinifera];; (*TAIR) AT1G09710.1 (e_value=4e-48) | Symbols: | Homeodomain-like superfamily protein | chr1:3141119-3144232 FORWARD LENGTH=610;; (*ITAG) Solyc12g087970.1.1 (e_value=2e-167) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61905636-61913972 transcript_region:SL2.40ch12:61905636..61913972- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6R0D2_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00007265g0003.1 protein AED:0.34 eAED:0.34 QI:449|0.5|0.66|0.66|0.5|0.33|3|0|164; (*GB) gi|224063327|ref|XP_002301098.1| (e_value=2e-66) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g087960.1.1 (e_value=1e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:61902124-61904077 transcript_region:SL2.40ch12:61902124..61904077+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007265g0102.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|246 NbS00057060g0004.1 protein AED:0.13 eAED:0.13 QI:26|0.66|0.6|1|0.44|0.4|10|0|521; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=4e-163) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|O22040|ANP1_ARATH (e_value=1e-62) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=4e-144) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc02g065110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30847497-30852710 transcript_region:SL2.40ch02:30847497..30852710- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00015554g0005.1 protein AED:0.06 eAED:0.06 QI:272|1|1|1|0.62|0.66|9|267|526; (*GB) gi|359473485|ref|XP_003631305.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera];; (*SWP) sp|Q9CAA9|BH049_ARATH (e_value=3e-103) Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=3e-106) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc05g010610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4848664-4852023 transcript_region:SL2.40ch05:4848664..4852023+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00003541g0006.1 protein AED:0.02 eAED:0.02 QI:96|1|0.83|1|0.6|0.5|6|0|233; (*GB) gi|225442262|ref|XP_002279256.1| (e_value=2e-90) PREDICTED: uncharacterized protein LOC100242891 [Vitis vinifera];; (*SWP) sp|P74327|MRNC_SYNY3 (e_value=7e-22) Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3 SV=1;; (*TAIR) AT1G55140.1 (e_value=6e-80) | Symbols: | Ribonuclease III family protein | chr1:20572503-20574332 REVERSE LENGTH=237;; (*ITAG) Solyc03g121530.2.1 (e_value=6e-135) genomic_reference:SL2.40ch03 gene_region:63663788-63669237 transcript_region:SL2.40ch03:63663788..63669237+ go_terms:GO:0006396 functional_description:"Ribonuclease III (AHRD V1 ***- A2Q464_MEDTR); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00060414g0001.1 protein AED:0.00 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|435; (*GB) gi|225430850|ref|XP_002273885.1| (e_value=2e-93) PREDICTED: UPF0496 protein At4g34320-like [Vitis vinifera];; (*SWP) sp|Q10QE9|U496A_ORYSJ (e_value=4e-93) UPF0496 protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0199100 PE=2 SV=1;; (*TAIR) AT4G34320.1 (e_value=3e-88) | Symbols: | Protein of unknown function (DUF677) | chr4:16422436-16423824 FORWARD LENGTH=374;; (*ITAG) Solyc11g039740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:25529511-25530671 transcript_region:SL2.40ch11:25529511..25530671+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00003206g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|225449204|ref|XP_002276050.1| (e_value=0.0) PREDICTED: uncharacterized acetyltransferase At3g50280-like [Vitis vinifera];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=2e-59) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT2G39980.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16688437-16689885 REVERSE LENGTH=482;; (*ITAG) Solyc05g052680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62040079-62041452 transcript_region:SL2.40ch05:62040079..62041452- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00010229g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|662; (*GB) gi|224082530|ref|XP_002306730.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FX24|PPR71_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2;; (*TAIR) AT1G34160.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:12441393-12443225 FORWARD LENGTH=581;; (*ITAG) Solyc04g072170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56779293-56781017 transcript_region:SL2.40ch04:56779293..56781017+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJF2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00010229g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0.33|1|1|1|3|0|285; (*GB) gi|363814537|ref|NP_001242157.1| (e_value=3e-148) uncharacterized protein LOC100795462 [Glycine max];; (*SWP) sp|Q9AST3|SBH2_ARATH (e_value=3e-114) Sphingoid base hydroxylase 2 OS=Arabidopsis thaliana GN=SBH2 PE=2 SV=1;; (*TAIR) AT1G14290.1 (e_value=2e-115) | Symbols: SBH2 | sphingoid base hydroxylase 2 | chr1:4880307-4881784 REVERSE LENGTH=259;; (*ITAG) Solyc05g007460.2.1 (e_value=2e-124) genomic_reference:SL2.40ch05 gene_region:2030433-2034096 transcript_region:SL2.40ch05:2030433..2034096+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 **-* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00010229g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|1|0.5|0.8|5|395|162; (*GB) gi|350539529|ref|NP_001234685.1| (e_value=2e-64) ripening regulated protein DDTFR8 [Solanum lycopersicum];; (*SWP) sp|Q6YYB0|Y8359_ORYSJ (e_value=3e-32) Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1;; (*TAIR) AT4G02450.2 (e_value=4e-25) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc04g072160.2.1 (e_value=5e-68) genomic_reference:SL2.40ch04 gene_region:56774062-56776799 transcript_region:SL2.40ch04:56774062..56776799- functional_description:"Prostaglandin E synthase 3 (AHRD V1 **-- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00004155g0014.1 protein AED:0.02 eAED:0.02 QI:104|0.5|0.33|1|0.5|0.33|3|0|585; (*GB) gi|255537876|ref|XP_002510003.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=4e-54) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G58340.1 (e_value=0.0) | Symbols: ZF14 | MATE efflux family protein | chr1:21653162-21655117 FORWARD LENGTH=532;; (*ITAG) Solyc04g076950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59485478-59487628 transcript_region:SL2.40ch04:59485478..59487628- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00004155g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|282154858|dbj|BAI60050.1| (e_value=7e-95) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q9FE59|SUC4_ARATH (e_value=1e-70) Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2;; (*TAIR) AT1G09960.1 (e_value=1e-71) | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter 4 | chr1:3244258-3246718 FORWARD LENGTH=510;; (*ITAG) Solyc04g076960.2.1 (e_value=2e-96) genomic_reference:SL2.40ch04 gene_region:59497251-59504210 transcript_region:SL2.40ch04:59497251..59504210- go_terms:GO:0008506 functional_description:"Sucrose transporter (AHRD V1 **** Q9FVJ6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00004155g0002.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|4|0|319; (*GB) gi|282154858|dbj|BAI60050.1| (e_value=0.0) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q9FE59|SUC4_ARATH (e_value=2e-119) Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2;; (*TAIR) AT1G09960.1 (e_value=1e-120) | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter 4 | chr1:3244258-3246718 FORWARD LENGTH=510;; (*ITAG) Solyc04g076960.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59497251-59504210 transcript_region:SL2.40ch04:59497251..59504210- go_terms:GO:0008506 functional_description:"Sucrose transporter (AHRD V1 **** Q9FVJ6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00006952g0006.1 protein AED:0.06 eAED:0.06 QI:115|1|1|1|0.83|1|7|271|472; (*GB) gi|359488145|ref|XP_002265933.2| (e_value=6e-157) PREDICTED: MATE efflux family protein 5-like [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=1e-136) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G71140.1 (e_value=5e-151) | Symbols: | MATE efflux family protein | chr1:26824762-26826748 FORWARD LENGTH=485;; (*ITAG) Solyc02g063260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29900789-29904504 transcript_region:SL2.40ch02:29900789..29904504- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWCT); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00006952g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|128 NbC26133540g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.87|1|1|1|8|86|725; (*GB) gi|359480500|ref|XP_002269388.2| (e_value=0.0) PREDICTED: ABC transporter G family member 11-like [Vitis vinifera];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc05g051530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61038164-61040595 transcript_region:SL2.40ch05:61038164..61040595- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00026426g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.8|1|1|0.8|5|0|211; (*GB) gi|255543867|ref|XP_002512996.1| (e_value=9e-108) Salt-tolerance protein, putative [Ricinus communis];; (*SWP) sp|Q9SYM2|STHY_ARATH (e_value=3e-26) Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2;; (*TAIR) AT4G38960.1 (e_value=1e-80) | Symbols: | B-box type zinc finger family protein | chr4:18161576-18163045 FORWARD LENGTH=183;; (*ITAG) Solyc01g110370.2.1 (e_value=1e-142) genomic_reference:SL2.40ch01 gene_region:88848214-88852895 transcript_region:SL2.40ch01:88848214..88852895- go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 3 (AHRD V1 *--- COL3_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbC26242571g0003.1 protein AED:0.05 eAED:0.05 QI:114|1|1|1|0.25|0.6|5|771|157; (*GB) gi|1762945|gb|AAC49975.1| (e_value=9e-70) ORF; able to induce HR-like lesions [Nicotiana tabacum];; (*TAIR) AT4G14420.1 (e_value=2e-56) | Symbols: | HR-like lesion-inducing protein-related | chr4:8302171-8303738 REVERSE LENGTH=158;; (*ITAG) Solyc03g005470.2.1 (e_value=3e-69) genomic_reference:SL2.40ch03 gene_region:366040-369863 transcript_region:SL2.40ch03:366040..369863+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6T757_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00042677g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.5|1|1|1|6|0|1046; (*GB) gi|359478617|ref|XP_003632146.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=2e-111) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT3G46780.1 (e_value=3e-153) | Symbols: PTAC16 | plastid transcriptionally active 16 | chr3:17228766-17231021 FORWARD LENGTH=510;; (*ITAG) Solyc06g005700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:756439-758247 transcript_region:SL2.40ch06:756439..758247+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00048129g0006.1 protein AED:0.02 eAED:0.09 QI:0|1|0.57|1|0.83|0.85|7|0|652; (*GB) gi|255540049|ref|XP_002511089.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT5G50970.1 (e_value=2e-164) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512;; (*ITAG) Solyc12g042200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42688645-42702623 transcript_region:SL2.40ch12:42688645..42702623+ functional_description:"U5 small nuclear ribonucleoprotein protein (AHRD V1 *--- C1BSR6_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00008942g0016.1 protein AED:0.15 eAED:0.15 QI:0|0.69|0.64|1|0.84|0.92|14|0|604; (*GB) gi|255583034|ref|XP_002532285.1| (e_value=0.0) fimbrin, putative [Ricinus communis];; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G35700.1 (e_value=0.0) | Symbols: FIM2, FIM5 | fimbrin-like protein 2 | chr5:13872833-13876432 REVERSE LENGTH=687;; (*ITAG) Solyc07g049600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57259712-57265543 transcript_region:SL2.40ch07:57259712..57265543- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00008942g0015.1 protein AED:0.10 eAED:0.10 QI:0|1|0.6|1|1|1|5|0|513; (*GB) gi|225446991|ref|XP_002268472.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At2g04740-like [Vitis vinifera];; (*SWP) sp|Q9SJ85|Y2474_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2;; (*TAIR) AT2G04740.1 (e_value=0.0) | Symbols: | ankyrin repeat family protein | chr2:1657137-1659563 FORWARD LENGTH=578;; (*ITAG) Solyc07g049590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57248597-57253470 transcript_region:SL2.40ch07:57248597..57253470+ go_terms:GO:0005515 functional_description:"Ankyrin repeat and BTB/POZ domain protein (AHRD V1 *-*- A1CMQ3_ASPCL); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00008942g0009.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.6|1|1|5|0|305; (*GB) gi|356574438|ref|XP_003555354.1| (e_value=2e-72) PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Glycine max];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=2e-19) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT5G62220.1 (e_value=1e-42) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=4e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00008942g0001.1 protein AED:0.51 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|255583036|ref|XP_002532286.1| (e_value=1e-17) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SJ85|Y2474_ARATH (e_value=2e-17) BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana GN=At2g04740 PE=2 SV=2;; (*TAIR) AT2G04740.1 (e_value=1e-18) | Symbols: | ankyrin repeat family protein | chr2:1657137-1659563 FORWARD LENGTH=578;; (*ITAG) Solyc07g049590.2.1 (e_value=2e-25) genomic_reference:SL2.40ch07 gene_region:57248597-57253470 transcript_region:SL2.40ch07:57248597..57253470+ go_terms:GO:0005515 functional_description:"Ankyrin repeat and BTB/POZ domain protein (AHRD V1 *-*- A1CMQ3_ASPCL); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00039679g0005.1 protein AED:0.24 eAED:0.24 QI:172|1|0.87|1|0.71|0.62|8|273|360; (*GB) gi|147790324|emb|CAN61200.1| (e_value=7e-161) hypothetical protein VITISV_003214 [Vitis vinifera];; (*SWP) sp|C1BK83|SEH1_OSMMO (e_value=8e-33) Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1;; (*TAIR) AT1G64350.1 (e_value=3e-142) | Symbols: SEH1H | Transducin/WD40 repeat-like superfamily protein | chr1:23881582-23883073 FORWARD LENGTH=326;; (*ITAG) Solyc08g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62159102-62164303 transcript_region:SL2.40ch08:62159102..62164303+ functional_description:"Transport protein SEC13 (AHRD V1 ***- C1GD28_PARBD); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00039679g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.5|1|0.33|0.25|4|0|360; (*GB) gi|209978913|gb|ACJ04728.1| (e_value=2e-109) WRKY transcription factor-30 [Capsicum annuum];; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=2e-40) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.1 (e_value=1e-41) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=313;; (*ITAG) Solyc08g082110.2.1 (e_value=2e-173) genomic_reference:SL2.40ch08 gene_region:62164391-62166398 transcript_region:SL2.40ch08:62164391..62166398- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0019900 NbS00013385g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|224085437|ref|XP_002307575.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|A4ZDL6|GNK2_GINBI (e_value=2e-15) Antifungal protein ginkbilobin-2 OS=Ginkgo biloba GN=GNK2 PE=1 SV=1;; (*ITAG) Solyc04g026140.1.1 (e_value=3e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:24676006-24676422 transcript_region:SL2.40ch04:24676006..24676422- functional_description:"Embryo-abundant protein (Fragment) (AHRD V1 **-- Q3I3Y8_PICGL)"; NbS00013563g0018.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.4|1|1|1|5|214|345; (*GB) gi|224116342|ref|XP_002317274.1| (e_value=1e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=3e-25) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT1G61740.1 (e_value=2e-55) | Symbols: | Sulfite exporter TauE/SafE family protein | chr1:22798365-22801020 REVERSE LENGTH=458;; (*ITAG) Solyc02g079980.2.1 (e_value=1e-94) genomic_reference:SL2.40ch02 gene_region:38924299-38926747 transcript_region:SL2.40ch02:38924299..38926747- go_terms:GO:0005515 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0005515 NbS00013563g0027.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.5|1|0.6|0.66|6|0|271; (*GB) gi|350534450|ref|NP_001234653.1| (e_value=2e-164) phosphosulfolactate synthase-related protein [Solanum lycopersicum];; (*TAIR) AT4G21320.1 (e_value=3e-133) | Symbols: HSA32 | Aldolase-type TIM barrel family protein | chr4:11340492-11341732 FORWARD LENGTH=286;; (*ITAG) Solyc02g079930.2.1 (e_value=4e-167) genomic_reference:SL2.40ch02 gene_region:38895029-38898734 transcript_region:SL2.40ch02:38895029..38898734- go_terms:GO:0019295,GO:0008152 functional_description:"Phosphosulfolactate synthase (AHRD V1 ***- Q1ASZ8_RUBXD); contains Interpro domain(s) IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA "; GO:0019295,GO:0008152 NbS00013563g0028.1 protein AED:0.10 eAED:0.18 QI:0|1|0|1|1|1|2|0|471; (*GB) gi|359497553|ref|XP_002272624.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244205 [Vitis vinifera];; (*TAIR) AT5G54630.1 (e_value=3e-124) | Symbols: | zinc finger protein-related | chr5:22192607-22194260 REVERSE LENGTH=472;; (*ITAG) Solyc02g079920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38890126-38892256 transcript_region:SL2.40ch02:38890126..38892256- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013563g0003.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.5|1|1|1|4|0|212; (*GB) gi|384038829|gb|AFH58005.1| (e_value=4e-111) chloroplast PsbQ1 precursor [Nicotiana benthamiana];; (*SWP) sp|Q41932|PSBQ2_ARATH (e_value=5e-62) Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2;; (*TAIR) AT4G05180.1 (e_value=4e-63) | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230;; (*ITAG) Solyc02g079950.2.1 (e_value=4e-102) genomic_reference:SL2.40ch02 gene_region:38907616-38909519 transcript_region:SL2.40ch02:38907616..38909519- go_terms:GO:0019898 functional_description:"Oxygen-evolving enhancer protein 3 (AHRD V1 ***- Q7Y1T5_PEA); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "; GO:0019898 NbS00013563g0024.1 protein AED:0.20 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|173; (*GB) gi|15233592|ref|NP_193862.1| (e_value=4e-62) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G21310.1 (e_value=9e-65) | Symbols: | Protein of unknown function (DUF1218) | chr4:11339134-11339787 REVERSE LENGTH=168;; (*ITAG) Solyc02g079940.2.1 (e_value=8e-92) genomic_reference:SL2.40ch02 gene_region:38905889-38907292 transcript_region:SL2.40ch02:38905889..38907292+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00013563g0022.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.33|1|0.6|0.66|6|0|306; (*GB) gi|359497014|ref|XP_002273184.2| (e_value=4e-80) PREDICTED: transcription factor ILR3-like [Vitis vinifera];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=1e-64) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=9e-66) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc02g079970.2.1 (e_value=2e-144) genomic_reference:SL2.40ch02 gene_region:38920797-38923810 transcript_region:SL2.40ch02:38920797..38923810+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00013563g0023.1 protein AED:0.30 eAED:0.30 QI:93|1|1|1|1|1|3|636|126; (*GB) gi|4928460|gb|AAD33596.1|AF133127_1 (e_value=1e-57) thioredoxin h [Hevea brasiliensis];; (*SWP) sp|Q8LDI5|CXXS1_ARATH (e_value=5e-48) Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2;; (*TAIR) AT1G11530.1 (e_value=4e-49) | Symbols: ATCXXS1, CXXS1 | C-terminal cysteine residue is changed to a serine 1 | chr1:3874518-3875311 FORWARD LENGTH=118;; (*ITAG) Solyc02g079960.2.1 (e_value=1e-75) genomic_reference:SL2.40ch02 gene_region:38911296-38915191 transcript_region:SL2.40ch02:38911296..38915191+ go_terms:GO:0045454 functional_description:"Thioredoxin h (AHRD V1 ***- Q9XF70_HEVBR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00025701g0011.1 protein AED:0.15 eAED:0.15 QI:79|0.73|0.70|1|0.82|0.79|24|0|965; (*GB) gi|297734872|emb|CBI17106.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q851R2|MEL1_ORYSJ (e_value=0.0) Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1;; (*TAIR) AT2G27880.1 (e_value=0.0) | Symbols: AGO5 | Argonaute family protein | chr2:11871488-11876712 FORWARD LENGTH=997;; (*ITAG) Solyc06g074730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42661355-42667953 transcript_region:SL2.40ch06:42661355..42667953+ go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00025701g0010.1 protein AED:0.14 eAED:0.14 QI:268|0.89|0.95|0.95|0.78|0.9|20|252|975; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=0.0) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=0.0) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=0.0) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc06g074740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42668546-42679343 transcript_region:SL2.40ch06:42668546..42679343- go_terms:GO:0008017 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR017986 WD40 repeat, region "; GO:0008017 NbS00040293g0004.1 protein AED:0.04 eAED:0.04 QI:735|1|1|1|0.83|0.71|7|368|361; (*GB) gi|297746360|emb|CBI16416.3| (e_value=1e-81) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C690|BH122_ARATH (e_value=7e-48) Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1;; (*TAIR) AT1G51140.1 (e_value=6e-49) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943802-18945613 REVERSE LENGTH=379;; (*ITAG) Solyc11g056650.1.1 (e_value=3e-158) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:45024809-45027346 transcript_region:SL2.40ch11:45024809..45027346- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00044021g0003.1 protein AED:0.08 eAED:0.15 QI:0|0|0|1|1|1|3|0|236; (*GB) gi|115445821|ref|NP_001046690.1| (e_value=2e-100) Os02g0321900 [Oryza sativa Japonica Group];; (*SWP) sp|P59230|R10A2_ARATH (e_value=1e-100) 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1;; (*TAIR) AT2G27530.2 (e_value=8e-102) | Symbols: PGY1 | Ribosomal protein L1p/L10e family | chr2:11763443-11764570 REVERSE LENGTH=216;; (*ITAG) Solyc06g074300.2.1 (e_value=4e-110) genomic_reference:SL2.40ch06 gene_region:42312797-42316469 transcript_region:SL2.40ch06:42312797..42316469- go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00030577g0007.1 protein AED:0.00 eAED:0.00 QI:19|1|0.75|1|0.33|0.25|4|241|326; (*GB) gi|224075000|ref|XP_002304512.1| (e_value=3e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41380.1 (e_value=9e-52) | Symbols: | CCT motif family protein | chr5:16562129-16563553 REVERSE LENGTH=307;; (*ITAG) Solyc08g081350.2.1 (e_value=3e-135) genomic_reference:SL2.40ch08 gene_region:61584925-61587145 transcript_region:SL2.40ch08:61584925..61587145- functional_description:"Constans-like protein (AHRD V1 *--- Q7Y1T8_BRANA); contains Interpro domain(s) IPR010402 CCT domain "; NbS00041686g0004.1 protein AED:0.08 eAED:0.08 QI:149|1|0.9|1|1|1|10|196|221; (*GB) gi|359484516|ref|XP_002283092.2| (e_value=3e-119) PREDICTED: meiotic nuclear division protein 1 homolog [Vitis vinifera];; (*SWP) sp|Q8GYD2|MND1_ARATH (e_value=2e-111) Meiotic nuclear division protein 1 homolog OS=Arabidopsis thaliana GN=MND1 PE=1 SV=1;; (*TAIR) AT4G29170.1 (e_value=1e-112) | Symbols: ATMND1 | Mnd1 family protein | chr4:14382985-14385128 FORWARD LENGTH=230;; (*ITAG) Solyc12g008680.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2056414-2062039 transcript_region:SL2.40ch12:2056414..2062039+ go_terms:GO:0042802 functional_description:"Meiotic nuclear division protein 1 homolog (AHRD V1 ***- C1C1M1_9MAXI); contains Interpro domain(s) IPR005647 Meiotic nuclear division protein 1 "; GO:0042802 NbS00041686g0006.1 protein AED:0.34 eAED:0.43 QI:0|0|0.5|1|1|1|2|237|61; (*GB) gi|356520850|ref|XP_003529073.1| (e_value=3e-18) PREDICTED: arabinogalactan peptide 20-like [Glycine max];; (*SWP) sp|Q9FK16|AGP22_ARATH (e_value=2e-14) Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1;; (*TAIR) AT5G53250.1 (e_value=1e-15) | Symbols: AGP22, ATAGP22 | arabinogalactan protein 22 | chr5:21603715-21604007 FORWARD LENGTH=63;; (*ITAG) Solyc01g095520.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:78520328-78520863 transcript_region:SL2.40ch01:78520328..78520863- go_terms:GO:0005160 functional_description:"Arabinogalactan peptide 16 (AHRD V1 **-- AGP16_ARATH); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 "; GO:0005160 NbS00023613g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|0.5|0.6|5|0|325; (*GB) gi|297740481|emb|CBI30663.3| (e_value=1e-74) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FXJ2|GDL7_ARATH (e_value=1e-73) GDSL esterase/lipase At1g28580 OS=Arabidopsis thaliana GN=At1g28580 PE=2 SV=1;; (*TAIR) AT1G28580.1 (e_value=1e-74) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10044603-10046379 REVERSE LENGTH=390;; (*ITAG) Solyc10g008710.2.1 (e_value=2e-146) genomic_reference:SL2.40ch10 gene_region:2775631-2779084 transcript_region:SL2.40ch10:2775631..2779084- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28610 (AHRD V1 **** GDL10_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00013800g0009.1 protein AED:0.02 eAED:0.02 QI:238|1|1|1|0.5|0.66|3|394|151; (*GB) gi|146220096|gb|ABQ11262.1| (e_value=1e-107) mago nashi-like protein 1 [Physalis pubescens];; (*SWP) sp|P49030|MGN_ORYSJ (e_value=2e-99) Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2;; (*TAIR) AT1G02140.1 (e_value=3e-97) | Symbols: MEE63, MAGO, HAP1 | mago nashi family protein | chr1:403467-404401 REVERSE LENGTH=150;; (*ITAG) Solyc03g093680.2.1 (e_value=4e-107) genomic_reference:SL2.40ch03 gene_region:48763706-48768132 transcript_region:SL2.40ch03:48763706..48768132+ go_terms:GO:0032183 functional_description:"Mago nashi-like protein 2 (AHRD V1 ***- A5H9J2_9SOLA); contains Interpro domain(s) IPR004023 Mago nashi protein "; GO:0032183 NbS00013800g0006.1 protein AED:0.24 eAED:0.24 QI:44|1|0.5|1|1|1|2|0|250; (*GB) gi|344227185|gb|AEN03272.1| (e_value=2e-128) methionine sulfoxide reductase A4 [Solanum lycopersicum];; (*SWP) sp|Q9SEC2|MSRA_LACSA (e_value=1e-125) Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1;; (*TAIR) AT4G25130.1 (e_value=6e-116) | Symbols: PMSR4 | peptide met sulfoxide reductase 4 | chr4:12898802-12899998 REVERSE LENGTH=258;; (*ITAG) Solyc03g093690.2.1 (e_value=3e-131) genomic_reference:SL2.40ch03 gene_region:48771078-48774007 transcript_region:SL2.40ch03:48771078..48774007+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 **** D2B4D8_STRRD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00049774g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0|0.33|3|431|93; (*GB) gi|388514825|gb|AFK45474.1| (e_value=2e-29) unknown [Medicago truncatula];; (*TAIR) AT4G17670.1 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF581) | chr4:9833948-9834663 REVERSE LENGTH=159;; (*ITAG) Solyc08g077480.2.1 (e_value=7e-36) genomic_reference:SL2.40ch08 gene_region:58599749-58601339 transcript_region:SL2.40ch08:58599749..58601339+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00061444g0005.1 protein AED:0.08 eAED:0.14 QI:0|0.8|0.5|1|0.6|0.66|6|0|555; (*GB) gi|85068618|gb|ABC69389.1| (e_value=0.0) CYP72A52v1 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=2e-175) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc10g051020.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46848983-46854212 transcript_region:SL2.40ch10:46848983..46854212- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00049878g0004.1 protein AED:0.46 eAED:0.46 QI:0|0.5|0|0.66|0.5|0.33|3|0|145; (*GB) gi|82621170|gb|ABB86273.1| (e_value=1e-73) cytoplasmic ribosomal protein S13-like [Solanum tuberosum];; (*SWP) sp|P62302|RS13_SOYBN (e_value=3e-74) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=6e-74) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00049878g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0.33|0.66|0.5|0.66|3|466|67 NbS00007501g0002.1 protein AED:0.27 eAED:0.29 QI:0|0.87|0.66|1|1|1|9|0|467; (*GB) gi|225427599|ref|XP_002270781.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264895 [Vitis vinifera];; (*TAIR) AT4G19160.2 (e_value=2e-167) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10477772-10479947 FORWARD LENGTH=453;; (*ITAG) Solyc08g075520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56838057-56842836 transcript_region:SL2.40ch08:56838057..56842836- functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00035911g0001.1 protein AED:0.54 eAED:0.89 QI:0|0|0|0.5|1|1|4|0|99 NbS00017934g0005.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|5|349|637; (*GB) gi|7652766|gb|AAB96765.2| (e_value=0.0) ethylene receptor ERS homolog [Nicotiana tabacum];; (*SWP) sp|O81122|ETR1_MALDO (e_value=0.0) Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1;; (*TAIR) AT2G40940.1 (e_value=0.0) | Symbols: ERS1, ERS | ethylene response sensor 1 | chr2:17084635-17086819 REVERSE LENGTH=613;; (*ITAG) Solyc09g075440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62631866-62639953 transcript_region:SL2.40ch09:62631866..62639953- go_terms:GO:0051740 functional_description:"Ethylene receptor (AHRD V1 **** Q41341_SOLLC); contains Interpro domain(s) IPR005467 Signal transduction histidine kinase, core "; GO:0051740 NbS00051811g0004.1 protein AED:0.20 eAED:0.20 QI:206|0.9|0.81|1|0.8|0.72|11|498|540; (*GB) gi|255545394|ref|XP_002513757.1| (e_value=0.0) chlorophyll synthase, putative [Ricinus communis];; (*SWP) sp|Q9MBA1|CAO_ARATH (e_value=0.0) Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1;; (*TAIR) AT1G44446.1 (e_value=0.0) | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr1:16848664-16851152 REVERSE LENGTH=536;; (*ITAG) Solyc06g060310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34673695-34677472 transcript_region:SL2.40ch06:34673695..34677472- go_terms:GO:0010277 functional_description:"Chlorophyllide a oxygenase (AHRD V1 **** B6TZB6_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0010277 NbS00014855g0014.1 protein AED:0.01 eAED:0.01 QI:237|1|1|1|0.5|0.66|3|375|143; (*GB) gi|357495041|ref|XP_003617809.1| (e_value=1e-44) hypothetical protein MTR_5g095700 [Medicago truncatula];; (*TAIR) AT5G55640.1 (e_value=1e-36) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22533244-22533923 REVERSE LENGTH=149;; (*ITAG) Solyc07g065480.2.1 (e_value=9e-71) genomic_reference:SL2.40ch07 gene_region:64435447-64438935 transcript_region:SL2.40ch07:64435447..64438935- functional_description:"Unknown Protein (AHRD V1)"; NbS00014855g0016.1 protein AED:0.12 eAED:0.12 QI:491|1|1|1|0.9|0.90|11|326|462; (*GB) gi|224143034|ref|XP_002324827.1| (e_value=1e-127) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18950.1 (e_value=6e-87) | Symbols: | DDT domain superfamily | chr1:6546539-6551549 FORWARD LENGTH=750;; (*ITAG) Solyc08g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54352106-54359570 transcript_region:SL2.40ch08:54352106..54359570+ functional_description:"Os07g0193600 protein (Fragment) (AHRD V1 **-- Q0D802_ORYSJ)"; NbS00014855g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-17) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=8e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00014855g0005.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|125; (*GB) gi|257831445|gb|ACV71023.1| (e_value=3e-25) UPA24 [Capsicum annuum];; (*ITAG) Solyc07g065460.1.1 (e_value=7e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64428630-64428974 transcript_region:SL2.40ch07:64428630..64428974- functional_description:"UPA24 (AHRD V1 *-*- C8YZB6_CAPAN)"; NbS00014855g0015.1 protein AED:0.11 eAED:0.12 QI:119|0.66|0.71|1|0.33|0.42|7|424|320; (*GB) gi|255563512|ref|XP_002522758.1| (e_value=2e-128) cysteine synthase, putative [Ricinus communis];; (*SWP) sp|Q54CN7|CYSK_DICDI (e_value=2e-79) Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1;; (*TAIR) AT1G55880.1 (e_value=3e-108) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr1:20899292-20901140 REVERSE LENGTH=421;; (*ITAG) Solyc07g065470.2.1 (e_value=1e-126) genomic_reference:SL2.40ch07 gene_region:64431786-64435368 transcript_region:SL2.40ch07:64431786..64435368+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** A5B2H2_VITVI); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0004124 NbS00009219g0006.1 protein AED:0.02 eAED:0.02 QI:111|1|1|1|1|1|3|282|167; (*GB) gi|288559134|sp|A1XGB4.1|PIMP1_CAPAN (e_value=7e-71) RecName: Full=CASP-like protein PIMP1; AltName: Full=Pathogen-induced membrane protein 1; Short=CaPIMP1;; (*SWP) sp|A1XGB4|PIMP1_CAPAN (e_value=2e-72) CASP-like protein PIMP1 OS=Capsicum annuum GN=PIMP1 PE=2 SV=1;; (*TAIR) AT2G39530.1 (e_value=5e-27) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16498659-16499401 REVERSE LENGTH=178;; (*ITAG) Solyc04g011490.2.1 (e_value=5e-71) genomic_reference:SL2.40ch04 gene_region:3923552-3925091 transcript_region:SL2.40ch04:3923552..3925091+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO)"; NbS00009219g0009.1 protein AED:0.31 eAED:0.31 QI:0|0.25|0.2|0.8|0.75|1|5|332|300 NbC24520157g0001.1 protein AED:0.00 eAED:0.00 QI:6|-1|0|1|-1|1|1|0|158; (*GB) gi|21535791|emb|CAC85727.1| (e_value=7e-92) putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum];; (*SWP) sp|Q55756|CARB_SYNY3 (e_value=2e-73) Carbamoyl-phosphate synthase large chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=carB PE=3 SV=2;; (*TAIR) AT1G29900.1 (e_value=1e-91) | Symbols: CARB | carbamoyl phosphate synthetase B | chr1:10468164-10471976 FORWARD LENGTH=1187;; (*ITAG) Solyc06g075340.2.1 (e_value=8e-95) genomic_reference:SL2.40ch06 gene_region:43154986-43160636 transcript_region:SL2.40ch06:43154986..43160636- go_terms:GO:0004087 functional_description:"Carbamoyl-phosphate synthase large chain (AHRD V1 **** D7AI57_GEOSK); contains Interpro domain(s) IPR006275 Carbamoyl phosphate synthase, large subunit, glutamine-dependent "; GO:0004087 NbS00029843g0005.1 protein AED:0.08 eAED:0.08 QI:247|0.72|0.66|1|0.54|0.5|12|0|1530; (*GB) gi|225449724|ref|XP_002267310.1| (e_value=3e-135) PREDICTED: transcriptional activator DEMETER-like [Vitis vinifera];; (*SWP) sp|Q8LK56|DME_ARATH (e_value=3e-61) Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2;; (*TAIR) AT5G04560.1 (e_value=2e-62) | Symbols: DME | HhH-GPD base excision DNA repair family protein | chr5:1310671-1318091 FORWARD LENGTH=1729;; (*ITAG) Solyc11g007580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1814235-1823255 transcript_region:SL2.40ch11:1814235..1823255- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"HhH-GPD family protein (AHRD V1 *--- D1CFH3_THET1); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00055573g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.6|0.5|1|0.6|0.83|6|0|353; (*GB) gi|224118626|ref|XP_002317867.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66HG4|GALM_RAT (e_value=5e-85) Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1;; (*TAIR) AT3G17940.1 (e_value=3e-179) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:6143707-6145244 REVERSE LENGTH=341;; (*ITAG) Solyc03g118650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61575132-61577276 transcript_region:SL2.40ch03:61575132..61577276+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose 1-epimerase-like protein (AHRD V1 **** Q9LVH6_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00055573g0006.1 protein AED:0.33 eAED:0.34 QI:0|0.77|0.8|1|0.55|0.7|10|439|365; (*GB) gi|224133236|ref|XP_002321517.1| (e_value=7e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RF33|DSCR3_PONAB (e_value=2e-52) Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1;; (*TAIR) AT1G48550.1 (e_value=3e-130) | Symbols: | Vacuolar protein sorting-associated protein 26 | chr1:17950792-17952645 REVERSE LENGTH=327;; (*ITAG) Solyc03g118660.2.1 (e_value=1e-167) genomic_reference:SL2.40ch03 gene_region:61578571-61582874 transcript_region:SL2.40ch03:61578571..61582874- go_terms:GO:0030904 functional_description:"Down syndrome critical region protein (AHRD V1 ***- Q17H45_AEDAE); contains Interpro domain(s) IPR005377 Vacuolar protein sorting-associated protein 26 "; GO:0030904 NbS00029318g0010.1 protein AED:0.29 eAED:0.29 QI:171|0.84|0.85|1|0.76|0.78|14|572|481; (*GB) gi|356507058|ref|XP_003522288.1| (e_value=0.0) PREDICTED: MLO-like protein 1-like [Glycine max];; (*SWP) sp|O49621|MLO1_ARATH (e_value=0.0) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=0.0) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc08g015870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6074040-6078983 transcript_region:SL2.40ch08:6074040..6078983- go_terms:GO:0016021 functional_description:"MLO-like protein 7 (AHRD V1 ***- C6EWE8_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00029318g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|96; (*ITAG) Solyc07g021740.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00029806g0012.1 protein AED:0.28 eAED:0.28 QI:150|0.9|0.81|0.90|0.8|0.72|11|0|576; (*GB) gi|225461656|ref|XP_002285438.1| (e_value=0.0) PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9FZ49|ALG9_ARATH (e_value=0.0) Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG9 PE=1 SV=1;; (*TAIR) AT1G16900.1 (e_value=0.0) | Symbols: | Alg9-like mannosyltransferase family | chr1:5779262-5782303 REVERSE LENGTH=570;; (*ITAG) Solyc07g062540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62457887-62462873 transcript_region:SL2.40ch07:62457887..62462873+ go_terms:GO:0004169,GO:0005529 functional_description:"Alpha-1 2-mannosyltransferase (AHRD V1 **-* C5G7Q7_AJEDR); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0004169,GO:0005529 NbS00029806g0011.1 protein AED:0.09 eAED:0.09 QI:123|1|1|1|0.6|0.83|6|253|468; (*GB) gi|359493604|ref|XP_002283120.2| (e_value=0.0) PREDICTED: UDP-N-acetylglucosamine 1-carboxyvinyltransferase-like [Vitis vinifera];; (*SWP) sp|Q3A949|MURA2_CARHZ (e_value=2e-137) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=murA2 PE=3 SV=1;; (*ITAG) Solyc07g062550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62463024-62467530 transcript_region:SL2.40ch07:62463024..62467530- go_terms:GO:0019277,GO:0016765,GO:0003824 functional_description:"UDP-N-acetylglucosamine 1-carboxyvinyltransferase (AHRD V1 ***- B1XJX8_SYNP2); contains Interpro domain(s) IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase "; GO:0019277,GO:0016765,GO:0003824 NbS00051173g0001.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|1|1|2|0|135; (*ITAG) Solyc12g044790.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45540588-45541745 transcript_region:SL2.40ch12:45540588..45541745+ functional_description:"F-box family protein (AHRD V1 *-*- D7LXD8_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00055986g0001.1 protein AED:0.04 eAED:0.06 QI:30|1|0.83|1|1|1|6|856|250; (*GB) gi|224133476|ref|XP_002321577.1| (e_value=4e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=2e-132) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=1e-133) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g026400.1.1 (e_value=1e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:16569293-16581104 transcript_region:SL2.40ch12:16569293..16581104+ go_terms:GO:0006508,GO:0003824 functional_description:"Serine protease (AHRD V1 ***- D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0006508,GO:0003824 NbS00016964g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|307135946|gb|ADN33807.1| (e_value=6e-36) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00016964g0005.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|154; (*GB) gi|225440474|ref|XP_002272505.1| (e_value=3e-77) PREDICTED: CASP-like protein At3g53850 [Vitis vinifera];; (*SWP) sp|Q945M8|CSPLI_ARATH (e_value=3e-66) CASP-like protein At3g53850 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1;; (*TAIR) AT3G53850.1 (e_value=2e-67) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:19948262-19948994 REVERSE LENGTH=154;; (*ITAG) Solyc09g011230.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:4562138-4566157 transcript_region:SL2.40ch09:4562138..4566157- functional_description:"UPF0497 membrane protein At3g53850 (AHRD V1 ***- U497L_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00042465g0006.1 protein AED:0.37 eAED:0.38 QI:0|0.6|0.66|1|0.6|0.83|6|277|375; (*GB) gi|170271|gb|AAA34085.1| (e_value=0.0) DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9FX53|TGT1_ARATH (e_value=2e-150) Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1;; (*TAIR) AT1G13450.1 (e_value=1e-151) | Symbols: GT-1 | Homeodomain-like superfamily protein | chr1:4612999-4615115 REVERSE LENGTH=406;; (*ITAG) Solyc12g077540.1.1 (e_value=5e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:58439095-58451736 transcript_region:SL2.40ch12:58439095..58451736- go_terms:GO:0003677 functional_description:"DNA-binding protein (AHRD V1 **-- Q7DMS9_TOBAC); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00001365g0003.1 protein AED:0.05 eAED:0.05 QI:109|1|0.75|1|1|1|4|270|980; (*GB) gi|359488670|ref|XP_002273438.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 41-like [Vitis vinifera];; (*SWP) sp|Q9LVX1|C3H41_ARATH (e_value=8e-176) Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1;; (*TAIR) AT3G27700.2 (e_value=6e-177) | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE LENGTH=908;; (*ITAG) Solyc12g035250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:24097531-24101454 transcript_region:SL2.40ch12:24097531..24101454- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 41 (AHRD V1 **-- C3H41_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00028108g0003.1 protein AED:0.30 eAED:0.32 QI:0|0.85|0.62|1|0.85|0.75|8|0|337; (*GB) gi|18041548|gb|AAL54858.1| (e_value=0.0) tetratricoredoxin [Nicotiana tabacum];; (*SWP) sp|Q8VWG7|TDX_ARATH (e_value=3e-118) TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1;; (*TAIR) AT3G17880.2 (e_value=1e-119) | Symbols: HIP, ATTDX, ATHIP2, TDX | tetraticopeptide domain-containing thioredoxin | chr3:6123534-6126113 FORWARD LENGTH=373;; (*ITAG) Solyc03g118550.2.1 (e_value=4e-176) genomic_reference:SL2.40ch03 gene_region:61487486-61491647 transcript_region:SL2.40ch03:61487486..61491647+ go_terms:GO:0030544 functional_description:"Thioredoxin h2 (AHRD V1 *-*- A1BLP7_MEDTR); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0030544 NbS00021363g0002.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|0|0.5|2|705|567; (*GB) gi|359489740|ref|XP_002264036.2| (e_value=0.0) PREDICTED: exportin-2-like [Vitis vinifera];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=0.0) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=0.0) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00021363g0003.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|147795654|emb|CAN67739.1| (e_value=0.0) hypothetical protein VITISV_016128 [Vitis vinifera];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=5e-173) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=4e-174) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00051191g0002.1 protein AED:0.56 eAED:0.56 QI:0|0.16|0|0.28|1|1|7|0|185; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=6e-48) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=3e-41) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094620.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49781139-49787966 transcript_region:SL2.40ch02:49781139..49787966- functional_description:"Unknown Protein (AHRD V1)"; NbS00017308g0020.1 protein AED:0.57 eAED:0.60 QI:0|0|0|0.75|0.33|0.5|4|0|165; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-26) hypothetical protein [Nicotiana tabacum]; NbS00017308g0017.1 protein AED:0.11 eAED:0.11 QI:0|1|0.9|1|0.77|0.7|10|652|456; (*GB) gi|225463946|ref|XP_002268010.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera];; (*TAIR) AT3G04650.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:1262017-1264343 FORWARD LENGTH=486;; (*ITAG) Solyc01g097160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79868250-79874975 transcript_region:SL2.40ch01:79868250..79874975+ go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B7G7N7_PHATR); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00017308g0018.1 protein AED:0.36 eAED:0.36 QI:300|1|1|1|1|1|3|299|153; (*GB) gi|351722004|ref|NP_001236717.1| (e_value=1e-72) uncharacterized protein LOC100305790 [Glycine max];; (*SWP) sp|Q8GY31|CDC25_ARATH (e_value=3e-70) Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana GN=CDC25 PE=1 SV=1;; (*TAIR) AT5G03455.1 (e_value=2e-71) | Symbols: CDC25, ARATH;CDC25, ACR2 | Rhodanese/Cell cycle control phosphatase superfamily protein | chr5:862592-863949 FORWARD LENGTH=146;; (*ITAG) Solyc01g097140.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:79858882-79862630 transcript_region:SL2.40ch01:79858882..79862630+ go_terms:GO:0004725 functional_description:"Dual-specificity tyrosine-phosphatase CDC25 (AHRD V1 **** Q10SX6_ORYSJ); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004725 NbS00017308g0019.1 protein AED:0.40 eAED:0.40 QI:0|1|0.66|1|1|1|6|0|415; (*GB) gi|198400339|gb|ACH87178.1| (e_value=5e-94) unknown protein [Camellia sinensis];; (*TAIR) AT1G54460.1 (e_value=6e-45) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr1:20340907-20342900 REVERSE LENGTH=338;; (*ITAG) Solyc01g097120.2.1 (e_value=6e-165) genomic_reference:SL2.40ch01 gene_region:79849857-79853064 transcript_region:SL2.40ch01:79849857..79853064+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00017308g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|143; (*ITAG) Solyc01g097170.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:79879394-79880238 transcript_region:SL2.40ch01:79879394..79880238+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041187g0002.1 protein AED:0.04 eAED:0.04 QI:189|1|0.66|1|0.5|0.66|3|0|179; (*GB) gi|255553127|ref|XP_002517606.1| (e_value=1e-93) lactoylglutathione lyase, putative [Ricinus communis];; (*TAIR) AT1G80160.1 (e_value=3e-92) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc03g116530.2.1 (e_value=3e-105) genomic_reference:SL2.40ch03 gene_region:59966079-59967384 transcript_region:SL2.40ch03:59966079..59967384- go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbC25835968g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|45 NbS00001100g0027.1 protein AED:0.09 eAED:0.09 QI:222|0|1|1|0|0.5|2|240|105; (*GB) gi|224082206|ref|XP_002306602.1| (e_value=9e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=8e-20) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.2 (e_value=4e-21) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6867742-6869114 FORWARD LENGTH=384;; (*ITAG) Solyc01g096990.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00001100g0019.1 protein AED:0.13 eAED:0.13 QI:0|0.87|0.88|1|1|1|9|335|668; (*GB) gi|225464505|ref|XP_002272128.1| (e_value=1e-163) PREDICTED: uncharacterized protein LOC100262848 [Vitis vinifera];; (*TAIR) AT4G25610.1 (e_value=1e-103) | Symbols: | C2H2-like zinc finger protein | chr4:13063801-13066860 FORWARD LENGTH=586;; (*ITAG) Solyc03g025440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7231513-7236551 transcript_region:SL2.40ch03:7231513..7236551- go_terms:GO:0003676 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MFZ1_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676 NbS00001100g0021.1 protein AED:0.13 eAED:0.13 QI:57|0.33|0.5|1|0.66|0.5|4|0|209; (*GB) gi|27529856|dbj|BAC53943.1| (e_value=2e-91) DnaJ homolog [Nicotiana tabacum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-84) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=4e-80) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=2e-98) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00001100g0023.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|0|521; (*GB) gi|255545230|ref|XP_002513676.1| (e_value=0.0) arsenite transport protein, putative [Ricinus communis];; (*SWP) sp|Q54GU0|ARSB_DICDI (e_value=4e-57) Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1;; (*TAIR) AT1G02260.1 (e_value=0.0) | Symbols: | Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502;; (*ITAG) Solyc06g036100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22211265-22213759 transcript_region:SL2.40ch06:22211265..22213759- go_terms:GO:0015446 functional_description:"Citrate transporter family protein (AHRD V1 ***- B6U1B5_MAIZE); contains Interpro domain(s) IPR004680 Divalent ion symporter "; GO:0015446 NbS00001100g0010.1 protein AED:0.36 eAED:0.36 QI:0|0.25|0|0.6|1|1|5|0|246; (*GB) gi|359482965|ref|XP_003632868.1| (e_value=5e-35) PREDICTED: polyphosphoinositide phosphatase-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=2e-19) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT3G14205.1 (e_value=2e-35) | Symbols: | Phosphoinositide phosphatase family protein | chr3:4716008-4720524 REVERSE LENGTH=808;; (*ITAG) Solyc03g123520.2.1 (e_value=7e-54) genomic_reference:SL2.40ch03 gene_region:64397000-64404700 transcript_region:SL2.40ch03:64397000..64404700+ go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- C1H752_PARBA); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00001100g0032.1 protein AED:0.20 eAED:0.21 QI:11|1|0.81|1|1|0.90|11|0|843; (*GB) gi|224137054|ref|XP_002322482.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=3e-88) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT1G63700.1 (e_value=0.0) | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily protein | chr1:23625208-23629031 REVERSE LENGTH=883;; (*ITAG) Solyc06g036080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22156308-22166784 transcript_region:SL2.40ch06:22156308..22166784- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00001100g0003.1 protein AED:0.24 eAED:0.24 QI:284|0.85|1|1|0.71|0.62|8|516|279; (*GB) gi|302143834|emb|CBI22695.3| (e_value=1e-124) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LF97|ASK21_ARATH (e_value=4e-110) SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1;; (*TAIR) AT3G61415.2 (e_value=1e-111) | Symbols: ASK21, SK21 | SKP1-like 21 | chr3:22723052-22725577 REVERSE LENGTH=349;; (*ITAG) Solyc06g036070.2.1 (e_value=2e-147) genomic_reference:SL2.40ch06 gene_region:22139329-22147147 transcript_region:SL2.40ch06:22139329..22147147- go_terms:GO:0004842 functional_description:"SCF ubiquitin ligase skp1 component (AHRD V1 *--* D3TMR7_GLOMM); contains Interpro domain(s) IPR001232 SKP1 component "; GO:0004842 NbS00020275g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|298|461; (*GB) gi|82697975|gb|ABB89022.1| (e_value=0.0) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q8LED9|CXE16_ARATH (e_value=0.0) Probable carboxylesterase 16 OS=Arabidopsis thaliana GN=CXE16 PE=2 SV=1;; (*TAIR) AT5G14310.1 (e_value=0.0) | Symbols: AtCXE16, CXE16 | carboxyesterase 16 | chr5:4615592-4617422 FORWARD LENGTH=446;; (*ITAG) Solyc02g093790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49084876-49088035 transcript_region:SL2.40ch02:49084876..49088035- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU8_ACTDE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00029424g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|599; (*GB) gi|225438898|ref|XP_002283886.1| (e_value=0.0) PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Vitis vinifera];; (*SWP) sp|O82333|GH31_ARATH (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1;; (*TAIR) AT2G14960.1 (e_value=0.0) | Symbols: GH3.1 | Auxin-responsive GH3 family protein | chr2:6451659-6453670 REVERSE LENGTH=590;; (*ITAG) Solyc02g092820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48369709-48372206 transcript_region:SL2.40ch02:48369709..48372206- go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00029424g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|97; (*GB) gi|388514149|gb|AFK45136.1| (e_value=6e-15) unknown [Medicago truncatula];; (*TAIR) AT2G15000.5 (e_value=3e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 80 Blast hits to 80 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6481839-6482316 REVERSE LENGTH=101;; (*ITAG) Solyc02g092830.2.1 (e_value=4e-40) genomic_reference:SL2.40ch02 gene_region:48380827-48386599 transcript_region:SL2.40ch02:48380827..48386599- functional_description:"Unknown Protein (AHRD V1)"; NbS00029424g0010.1 protein AED:0.09 eAED:0.09 QI:317|0.66|0.25|1|0.33|0.5|4|0|140; (*GB) gi|224136848|ref|XP_002326960.1| (e_value=7e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24204.3 (e_value=7e-22) | Symbols: | RING/U-box superfamily protein | chr4:12562069-12562815 REVERSE LENGTH=178;; (*ITAG) Solyc02g092810.2.1 (e_value=5e-60) genomic_reference:SL2.40ch02 gene_region:48351756-48352986 transcript_region:SL2.40ch02:48351756..48352986- go_terms:GO:0008270 functional_description:"RNA-binding protein MEX3C (AHRD V1 *-*- MEX3C_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00046729g0003.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|458; (*GB) gi|224139884|ref|XP_002323324.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41640.1 (e_value=0.0) | Symbols: | Glycosyltransferase family 61 protein | chr2:17360654-17362391 FORWARD LENGTH=500;; (*ITAG) Solyc04g016180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6913776-6916202 transcript_region:SL2.40ch04:6913776..6916202- go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ6_MEDTR); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757 NbS00008583g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|356; (*GB) gi|255560357|ref|XP_002521194.1| (e_value=1e-121) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q8RX37|P2C02_ARATH (e_value=1e-107) Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1;; (*TAIR) AT1G07160.1 (e_value=8e-109) | Symbols: | Protein phosphatase 2C family protein | chr1:2198155-2199678 REVERSE LENGTH=380;; (*ITAG) Solyc05g052520.2.1 (e_value=1e-145) genomic_reference:SL2.40ch05 gene_region:61892748-61895062 transcript_region:SL2.40ch05:61892748..61895062- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q3V656_SOLTU); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00008583g0108.1 protein AED:0.00 eAED:0.00 QI:110|1|1|1|1|1|2|152|92 NbS00008583g0111.1 protein AED:0.25 eAED:0.27 QI:0|0.73|0.69|0.94|0.76|0.79|39|0|1581 NbC24277801g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|729623|sp|Q03685.1|BIP5_TOBAC (e_value=1e-77) RecName: Full=Luminal-binding protein 5; Short=BiP 5; AltName: Full=78 kDa glucose-regulated protein homolog 5; Short=GRP-78-5; Flags: Precursor;; (*SWP) sp|Q03685|BIP5_TOBAC (e_value=3e-79) Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=3e-77) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc08g082820.2.1 (e_value=5e-79) genomic_reference:SL2.40ch08 gene_region:62655311-62659585 transcript_region:SL2.40ch08:62655311..62659585+ go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00013950g0029.1 protein AED:0.02 eAED:0.02 QI:83|1|1|1|1|1|2|71|194; (*GB) gi|255545840|ref|XP_002513980.1| (e_value=5e-48) Blue copper protein precursor, putative [Ricinus communis];; (*SWP) sp|Q41001|BCP_PEA (e_value=7e-45) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT1G72230.1 (e_value=3e-38) | Symbols: | Cupredoxin superfamily protein | chr1:27188287-27189093 FORWARD LENGTH=181;; (*ITAG) Solyc04g074740.2.1 (e_value=1e-62) genomic_reference:SL2.40ch04 gene_region:58263727-58265967 transcript_region:SL2.40ch04:58263727..58265967- go_terms:GO:0009055 functional_description:"Blue copper-like protein (AHRD V1 *--- A3F8V0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00013950g0027.1 protein AED:0.03 eAED:0.03 QI:227|1|1|1|0.8|0.83|6|312|328; (*GB) gi|225459199|ref|XP_002284035.1| (e_value=2e-134) PREDICTED: uncharacterized protein LOC100266077 [Vitis vinifera];; (*TAIR) AT4G09060.1 (e_value=7e-93) | Symbols: | unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:5797781-5800253 REVERSE LENGTH=341;; (*ITAG) Solyc04g074760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58274803-58279656 transcript_region:SL2.40ch04:58274803..58279656- functional_description:"SKIP interacting protein 16 (AHRD V1 *-*- B8Q8A2_ORYSI)"; NbS00013950g0026.1 protein AED:0.12 eAED:0.12 QI:221|1|1|1|1|1|5|145|205; (*ITAG) Solyc04g074770.2.1 (e_value=1e-86) genomic_reference:SL2.40ch04 gene_region:58285246-58286944 transcript_region:SL2.40ch04:58285246..58286944- functional_description:"Unknown Protein (AHRD V1)"; NbS00013950g0033.1 protein AED:0.15 eAED:0.15 QI:119|0.75|0.6|1|0.5|0.6|5|0|303; (*GB) gi|147769276|emb|CAN61580.1| (e_value=3e-70) hypothetical protein VITISV_008033 [Vitis vinifera];; (*SWP) sp|P19682|ROC3_NICSY (e_value=1e-17) 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G09040.1 (e_value=9e-61) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:5795075-5797315 REVERSE LENGTH=304;; (*ITAG) Solyc04g074750.2.1 (e_value=2e-123) genomic_reference:SL2.40ch04 gene_region:58271847-58273865 transcript_region:SL2.40ch04:58271847..58273865- go_terms:GO:0008266 functional_description:"Polyadenylate-binding protein 1-A (AHRD V1 **-* PAP1A_DICDI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00013950g0030.1 protein AED:0.26 eAED:0.26 QI:222|0.8|0.83|1|0.4|0.33|6|0|275; (*GB) gi|225432108|ref|XP_002262955.1| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100251180 [Vitis vinifera];; (*SWP) sp|Q75UQ2|CFDP1_RAT (e_value=6e-14) Craniofacial development protein 1 OS=Rattus norvegicus GN=Cfdp1 PE=2 SV=1;; (*TAIR) AT5G30490.2 (e_value=1e-41) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr5:11612199-11614271 FORWARD LENGTH=236;; (*ITAG) Solyc04g074800.2.1 (e_value=1e-119) genomic_reference:SL2.40ch04 gene_region:58301851-58303918 transcript_region:SL2.40ch04:58301851..58303918- functional_description:"Craniofacial development protein 1 (AHRD V1 ***- B6T6E2_MAIZE); contains Interpro domain(s) IPR011421 Craniofacial development protein 1/Bucentaur "; NbS00013950g0036.1 protein AED:0.27 eAED:0.47 QI:0|0|0|1|0|0.5|2|0|150 NbS00013950g0035.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.5|0|0|2|0|138; (*GB) gi|302142008|emb|CBI19211.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=2e-14) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT1G72220.1 (e_value=1e-15) | Symbols: | RING/U-box superfamily protein | chr1:27184388-27185629 REVERSE LENGTH=413;; (*ITAG) Solyc04g074790.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58300270-58301271 transcript_region:SL2.40ch04:58300270..58301271+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033221g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|104 NbS00028453g0008.1 protein AED:0.11 eAED:0.11 QI:130|0.8|0.81|1|0.66|0.75|16|421|779; (*GB) gi|225433316|ref|XP_002282504.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Vitis vinifera];; (*SWP) sp|A3AVH5|RH13_ORYSJ (e_value=0.0) DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2;; (*TAIR) AT3G16840.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5738020-5743042 REVERSE LENGTH=826;; (*ITAG) Solyc09g090740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65522093-65531328 transcript_region:SL2.40ch09:65522093..65531328- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** Q7Z4X3_HUMAN); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00056493g0010.1 protein AED:0.38 eAED:0.38 QI:247|0.85|1|1|0.14|0.12|8|38|169; (*GB) gi|225453664|ref|XP_002268438.1| (e_value=6e-54) PREDICTED: protein arv1 homolog [Vitis vinifera];; (*SWP) sp|Q9HDX5|ARV1_SCHPO (e_value=6e-15) Protein arv1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arv1 PE=2 SV=3;; (*TAIR) AT1G01020.2 (e_value=6e-40) | Symbols: ARV1 | Arv1-like protein | chr1:7315-8666 REVERSE LENGTH=191;; (*ITAG) Solyc11g008790.1.1 (e_value=3e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2971603-2976450 transcript_region:SL2.40ch11:2971603..2976450+ functional_description:"ARV1 (AHRD V1 ***- Q5MK24_ARATH); contains Interpro domain(s) IPR007290 Arv1-like protein "; NbS00056493g0001.1 protein AED:0.41 eAED:0.48 QI:0|0.5|0.6|1|0.75|0.6|5|473|136; (*GB) gi|224128085|ref|XP_002320240.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01510.1 (e_value=2e-20) | Symbols: ARV2 | Arv1-like protein | chr4:642755-644190 FORWARD LENGTH=228;; (*ITAG) Solyc11g008790.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2971603-2976450 transcript_region:SL2.40ch11:2971603..2976450+ functional_description:"ARV1 (AHRD V1 ***- Q5MK24_ARATH); contains Interpro domain(s) IPR007290 Arv1-like protein "; NbS00013169g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|0.66|3|0|232; (*GB) gi|359486650|ref|XP_002279604.2| (e_value=7e-79) PREDICTED: uncharacterized protein LOC100254673 [Vitis vinifera];; (*TAIR) AT5G39990.1 (e_value=3e-63) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:16004494-16006428 FORWARD LENGTH=447;; (*ITAG) Solyc04g010290.2.1 (e_value=4e-151) genomic_reference:SL2.40ch04 gene_region:3618701-3622866 transcript_region:SL2.40ch04:3618701..3622866+ go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00013169g0008.1 protein AED:0.24 eAED:0.24 QI:210|1|1|1|0.33|0.42|7|436|280; (*GB) gi|225451641|ref|XP_002277244.1| (e_value=2e-141) PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Vitis vinifera];; (*SWP) sp|O82768|HIS2_ARATH (e_value=4e-136) Histidine biosynthesis bifunctional protein hisIE, chloroplastic OS=Arabidopsis thaliana GN=At1g31860 PE=2 SV=1;; (*TAIR) AT1G31860.1 (e_value=3e-137) | Symbols: AT-IE, HISN2 | histidine biosynthesis bifunctional protein (HISIE) | chr1:11434250-11436530 REVERSE LENGTH=281;; (*ITAG) Solyc10g005930.1.1 (e_value=7e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:722719-725047 transcript_region:SL2.40ch10:722719..725047- go_terms:GO:0004636,GO:0004635 functional_description:"Phosphoribosyl-AMP cyclohydrolase (AHRD V1 *-** Q1IX38_DEIGD); contains Interpro domain(s) IPR002496 Phosphoribosyl-AMP cyclohydrolase "; GO:0004636,GO:0004635 NbS00014998g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.83|0.57|1|0.66|0.57|7|0|574; (*GB) gi|359493612|ref|XP_003634635.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264164 [Vitis vinifera];; (*TAIR) AT1G53210.1 (e_value=0.0) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc07g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62603490-62608714 transcript_region:SL2.40ch07:62603490..62608714- go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00014998g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|1|1|1|5|0|370; (*GB) gi|350536789|ref|NP_001234265.1| (e_value=2e-78) uncharacterized protein LOC100505457 [Solanum lycopersicum];; (*ITAG) Solyc12g014120.1.1 (e_value=1e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4931940-4933799 transcript_region:SL2.40ch12:4931940..4933799- functional_description:"Unknown Protein (AHRD V1)"; NbS00014998g0012.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|0.5|0.66|3|0|132; (*GB) gi|225431924|ref|XP_002277060.1| (e_value=7e-17) PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera];; (*TAIR) AT5G49430.1 (e_value=2e-15) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr5:20037338-20045454 REVERSE LENGTH=1677;; (*ITAG) Solyc01g060040.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:62265462-62270575 transcript_region:SL2.40ch01:62265462..62270575- go_terms:GO:0000166 functional_description:"Bromodomain and WD repeat-containing protein 1 (Predicted) (AHRD V1 *-*- B4USY4_OTOGA); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0000166 NbS00014998g0101.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|456 NbS00060013g0004.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|303; (*GB) gi|255580545|ref|XP_002531097.1| (e_value=7e-31) hypothetical protein RCOM_1417730 [Ricinus communis];; (*SWP) sp|Q94F39|AFP3_ARATH (e_value=1e-25) Ninja-family protein AFP3 OS=Arabidopsis thaliana GN=AFP3 PE=1 SV=1;; (*TAIR) AT3G07250.1 (e_value=1e-27) | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr3:2300579-2308305 REVERSE LENGTH=1294;; (*ITAG) Solyc06g083290.1.1 (e_value=5e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45053180-45053386 transcript_region:SL2.40ch06:45053180..45053386+ functional_description:"Ninja-family protein 2 (AHRD V1 ***- NNJA2_WHEAT); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; NbS00060013g0002.1 protein AED:0.39 eAED:0.78 QI:104|0|0.5|1|0|0.5|2|0|173 NbS00006612g0022.1 protein AED:0.33 eAED:0.53 QI:0|0.42|0.12|1|0.28|0.25|8|0|269; (*GB) gi|357118416|ref|XP_003560951.1| (e_value=2e-56) PREDICTED: omega-amidase NIT2-like [Brachypodium distachyon];; (*SWP) sp|Q28IE5|NIT2_XENTR (e_value=2e-32) Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1;; (*TAIR) AT5G12040.1 (e_value=7e-54) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr5:3885162-3887772 FORWARD LENGTH=369;; (*ITAG) Solyc06g064880.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:36832717-36835834 transcript_region:SL2.40ch06:36832717..36835834+ go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 2 (AHRD V1 **-* D3BLP1_POLPA); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00006612g0001.1 protein AED:0.22 eAED:0.22 QI:313|1|1|1|0.66|0.75|4|1139|104; (*GB) gi|255553647|ref|XP_002517864.1| (e_value=9e-53) 20 kD nuclear cap binding protein, putative [Ricinus communis];; (*SWP) sp|Q9XFD1|NCBP2_ARATH (e_value=3e-51) Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1;; (*TAIR) AT5G44200.2 (e_value=2e-52) | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 | chr5:17802062-17803875 REVERSE LENGTH=257;; (*ITAG) Solyc02g062620.2.1 (e_value=2e-54) genomic_reference:SL2.40ch02 gene_region:28927635-28944665 transcript_region:SL2.40ch02:28927635..28944665- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 2 (AHRD V1 **** B6SNB6_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0000339 NbS00006612g0024.1 protein AED:0.28 eAED:0.34 QI:0|0.8|0.66|1|0.4|0.5|6|0|263; (*GB) gi|255545468|ref|XP_002513794.1| (e_value=7e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G44770.1 (e_value=1e-92) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits to 81 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16907834-16909409 REVERSE LENGTH=271;; (*ITAG) Solyc11g030380.1.1 (e_value=1e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:18204804-18209264 transcript_region:SL2.40ch11:18204804..18209264- functional_description:"MADS box interactor-like (AHRD V1 *-*- Q6K819_ORYSJ)"; NbS00034351g0002.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.33|1|0|0.33|3|483|123; (*GB) gi|224139940|ref|XP_002323350.1| (e_value=6e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G13570.1 (e_value=3e-18) | Symbols: SCL30A, At-SCL30A | SC35-like splicing factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262;; (*ITAG) Solyc01g005820.2.1 (e_value=8e-20) genomic_reference:SL2.40ch01 gene_region:537499-541732 transcript_region:SL2.40ch01:537499..541732+ go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 4 (AHRD V1 *--- B6U7F9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00031296g0007.1 protein AED:0.09 eAED:0.09 QI:157|1|1|1|1|1|12|365|340; (*GB) gi|51949802|gb|AAU14833.1| (e_value=0.0) adenosine kinase isoform 2S [Nicotiana tabacum];; (*SWP) sp|Q9LZG0|ADK2_ARATH (e_value=0.0) Adenosine kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=1 SV=1;; (*TAIR) AT5G03300.1 (e_value=0.0) | Symbols: ADK2 | adenosine kinase 2 | chr5:796573-798997 FORWARD LENGTH=345;; (*ITAG) Solyc10g086190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64429085-64433301 transcript_region:SL2.40ch10:64429085..64433301+ go_terms:GO:0006166 functional_description:"Adenosine kinase (AHRD V1 ***- D2D2Z6_GOSHI); contains Interpro domain(s) IPR001805 Adenosine kinase "; GO:0006166 NbS00008449g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|85; (*GB) gi|356519926|ref|XP_003528619.1| (e_value=1e-29) PREDICTED: disease resistance response protein 206-like [Glycine max];; (*ITAG) Solyc01g059900.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:62040825-62041421 transcript_region:SL2.40ch01:62040825..62041421+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YR04_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00008449g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|359478529|ref|XP_003632127.1| (e_value=4e-51) PREDICTED: uncharacterized protein LOC100251809 isoform 1 [Vitis vinifera];; (*TAIR) AT1G07020.1 (e_value=1e-23) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:2155319-2155884 REVERSE LENGTH=147;; (*ITAG) Solyc03g098130.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:53913515-53914599 transcript_region:SL2.40ch03:53913515..53914599- functional_description:"Unknown Protein (AHRD V1)"; NbS00024286g0011.1 protein AED:0.36 eAED:0.45 QI:122|0.75|0.8|1|0.75|0.8|5|0|166; (*GB) gi|225440524|ref|XP_002275314.1| (e_value=3e-22) PREDICTED: uncharacterized protein LOC100252790 isoform 1 [Vitis vinifera];; (*TAIR) AT5G02020.1 (e_value=3e-17) | Symbols: SIS | Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). | chr5:386557-387921 REVERSE LENGTH=149;; (*ITAG) Solyc05g052890.2.1 (e_value=6e-62) genomic_reference:SL2.40ch05 gene_region:62215390-62217617 transcript_region:SL2.40ch05:62215390..62217617- functional_description:"Unknown Protein (AHRD V1)"; NbS00024286g0013.1 protein AED:0.09 eAED:0.21 QI:0|0|0|1|0|0|3|0|189; (*GB) gi|255566524|ref|XP_002524247.1| (e_value=1e-94) protein with unknown function [Ricinus communis];; (*SWP) sp|Q40193|RB11C_LOTJA (e_value=7e-90) Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=7e-91) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc03g079900.2.1 (e_value=2e-105) genomic_reference:SL2.40ch03 gene_region:45334174-45335900 transcript_region:SL2.40ch03:45334174..45335900+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00024286g0106.1 protein AED:0.24 eAED:0.24 QI:208|0.8|0.72|1|0.4|0.45|11|0|491 NbS00015560g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|57013968|ref|YP_173440.1| (e_value=1e-61) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00036442g0005.1 protein AED:0.23 eAED:0.23 QI:592|0.90|0.91|1|0.90|0.83|12|380|314; (*GB) gi|224129218|ref|XP_002320530.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7SXS7|SETD3_DANRE (e_value=6e-19) Histone-lysine N-methyltransferase setd3 OS=Danio rerio GN=setd3 PE=1 SV=1;; (*TAIR) AT3G07670.1 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr3:2451651-2454617 FORWARD LENGTH=504;; (*ITAG) Solyc07g045310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55728979-55739148 transcript_region:SL2.40ch07:55728979..55739148+ go_terms:GO:0009507 functional_description:"SET domain-containing protein (AHRD V1 ***- D7L6N3_ARALY); contains Interpro domain(s) IPR011192 Rubisco methyltransferase "; GO:0009507 NbS00026280g0011.1 protein AED:0.05 eAED:0.05 QI:68|1|1|1|1|1|3|399|342; (*GB) gi|359490251|ref|XP_002267774.2| (e_value=8e-86) PREDICTED: probable receptor-like protein kinase At5g39020-like [Vitis vinifera];; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=1e-22) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT5G53110.1 (e_value=4e-24) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc02g081480.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:40008799-40010960 transcript_region:SL2.40ch02:40008799..40010960+ go_terms:GO:0006468 functional_description:"Receptor kinase (AHRD V1 ***- Q9SWF1_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00026280g0010.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0.66|0.75|4|0|334; (*GB) gi|359476463|ref|XP_003631844.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100853048 [Vitis vinifera];; (*TAIR) AT3G02680.1 (e_value=1e-32) | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome 1 | chr3:576378-579226 FORWARD LENGTH=542;; (*ITAG) Solyc02g081520.2.1 (e_value=6e-137) genomic_reference:SL2.40ch02 gene_region:40021708-40034066 transcript_region:SL2.40ch02:40021708..40034066- go_terms:GO:0005622 functional_description:"Nibrin (AHRD V1 *--- Q3SZL4_BOVIN); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0005622 NbS00026280g0012.1 protein AED:0.16 eAED:0.22 QI:0|0|0|1|0|0.33|3|0|619; (*GB) gi|359495102|ref|XP_002263106.2| (e_value=1e-151) PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-75) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=5e-85) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc02g079610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38702972-38704500 transcript_region:SL2.40ch02:38702972..38704500+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00026949g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.89|1|1|1|19|584|1030; (*GB) gi|225434343|ref|XP_002276484.1| (e_value=0.0) PREDICTED: insulin-degrading enzyme-like [Vitis vinifera];; (*SWP) sp|Q24K02|IDE_BOVIN (e_value=8e-171) Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1;; (*TAIR) AT1G06900.1 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) family protein | chr1:2115155-2120635 REVERSE LENGTH=1024;; (*ITAG) Solyc02g043860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22693123-22723451 transcript_region:SL2.40ch02:22693123..22723451- go_terms:GO:0042803 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q8CGB9_MOUSE); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0042803 NbS00050375g0005.1 protein AED:0.08 eAED:0.08 QI:334|1|1|1|1|1|4|221|680; (*GB) gi|224056240|ref|XP_002298771.1| (e_value=3e-129) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08760.1 (e_value=6e-37) | Symbols: | Plant protein of unknown function (DUF936) | chr1:2805478-2808409 FORWARD LENGTH=748;; (*ITAG) Solyc01g107120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86503184-86506038 transcript_region:SL2.40ch01:86503184..86506038+ functional_description:"Legume lectin beta domain (AHRD V1 *-*- A2Q3C0_MEDTR); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00002444g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.95|0.90|1|0.42|0.54|22|405|652; (*GB) gi|359494635|ref|XP_002264188.2| (e_value=1e-167) PREDICTED: putative cyclin-B3-1-like [Vitis vinifera];; (*SWP) sp|Q9SA32|CCB31_ARATH (e_value=5e-132) Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=3 SV=2;; (*TAIR) AT1G16330.1 (e_value=1e-133) | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587391 REVERSE LENGTH=648;; (*ITAG) Solyc07g066660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65246054-65259212 transcript_region:SL2.40ch07:65246054..65259212+ go_terms:GO:0005634 functional_description:"Cyclin B2 (AHRD V1 *-*- B6TRI7_MAIZE); contains Interpro domain(s) IPR006671 Cyclin, N-terminal "; GO:0005634 NbS00002444g0006.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|0|0|2|0|37 NbS00025499g0009.1 protein AED:0.18 eAED:0.18 QI:298|1|1|1|0.91|0.92|13|171|565; (*GB) gi|356562953|ref|XP_003549732.1| (e_value=0.0) PREDICTED: extended synaptotagmin-1-like isoform 1 [Glycine max];; (*SWP) sp|Q5DTI8|ESYT3_MOUSE (e_value=6e-34) Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2;; (*TAIR) AT1G05500.1 (e_value=0.0) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc07g007680.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2323848-2335317 transcript_region:SL2.40ch07:2323848..2335317- functional_description:"Plant synaptotagmin (AHRD V1 **-- B9N719_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00025499g0008.1 protein AED:0.26 eAED:0.26 QI:245|1|0.87|1|1|1|8|0|454; (*GB) gi|47716657|gb|AAT37528.1| (e_value=0.0) purple acid phosphatase 3 [Solanum tuberosum];; (*SWP) sp|Q949Y3|PPA26_ARATH (e_value=0.0) Bifunctional purple acid phosphatase 26 OS=Arabidopsis thaliana GN=PAP26 PE=1 SV=1;; (*TAIR) AT5G34850.1 (e_value=0.0) | Symbols: ATPAP26, PAP26 | purple acid phosphatase 26 | chr5:13108475-13111217 REVERSE LENGTH=475;; (*ITAG) Solyc07g007670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2316679-2323829 transcript_region:SL2.40ch07:2316679..2323829+ go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase 3 (AHRD V1 **** Q6J5M8_SOLTU); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00051036g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|493; (*GB) gi|224139824|ref|XP_002323294.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q42798|C93A1_SOYBN (e_value=0.0) Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1;; (*TAIR) AT5G06900.1 (e_value=5e-156) | Symbols: CYP93D1 | cytochrome P450, family 93, subfamily D, polypeptide 1 | chr5:2136160-2137925 REVERSE LENGTH=507;; (*ITAG) Solyc01g010260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5060341-5062538 transcript_region:SL2.40ch01:5060341..5062538+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00051036g0009.1 protein AED:0.35 eAED:0.35 QI:404|1|0.66|1|1|1|3|0|258; (*GB) gi|224091437|ref|XP_002309251.1| (e_value=1e-157) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06370.1 (e_value=1e-150) | Symbols: | NC domain-containing protein-related | chr5:1947299-1948432 REVERSE LENGTH=259;; (*ITAG) Solyc01g007110.2.1 (e_value=1e-170) genomic_reference:SL2.40ch01 gene_region:1660222-1663543 transcript_region:SL2.40ch01:1660222..1663543+ functional_description:"NC domain-containing protein (AHRD V1 **-- D7LZP9_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00051036g0005.1 protein AED:0.12 eAED:0.12 QI:49|-1|0|1|-1|0|1|0|53; (*ITAG) Solyc00g313030.1.1 (e_value=6e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032241g0001.1 protein AED:0.17 eAED:0.17 QI:158|1|0.8|1|0.75|0.6|5|0|273; (*GB) gi|359473523|ref|XP_003631314.1| (e_value=6e-125) PREDICTED: uncharacterized protein At2g02148-like [Vitis vinifera];; (*SWP) sp|Q56XX3|Y2215_ARATH (e_value=6e-99) Uncharacterized protein At2g02148 OS=Arabidopsis thaliana GN=At2g02148 PE=2 SV=1;; (*TAIR) AT2G02148.1 (e_value=5e-100) | Symbols: | unknown protein. | chr2:547389-549316 REVERSE LENGTH=432;; (*ITAG) Solyc04g008560.2.1 (e_value=2e-172) genomic_reference:SL2.40ch04 gene_region:2173271-2179828 transcript_region:SL2.40ch04:2173271..2179828- go_terms:GO:0008152 functional_description:"Unknown Protein (AHRD V1)"; GO:0008152 NbS00001227g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|0.66|0.75|4|0|123; (*GB) gi|6671194|gb|AAF23127.1|AF198389_1 (e_value=3e-22) cystatin [Solanum lycopersicum];; (*SWP) sp|Q10992|CYTA_HELAN (e_value=4e-20) Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT3G12490.1 (e_value=1e-15) | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3:3960523-3961777 REVERSE LENGTH=201;; (*ITAG) Solyc01g009020.2.1 (e_value=6e-25) genomic_reference:SL2.40ch01 gene_region:3021936-3024369 transcript_region:SL2.40ch01:3021936..3024369- go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q2VY67_9ERIC); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00001227g0004.1 protein AED:0.02 eAED:0.02 QI:78|0.5|0.66|1|1|1|3|13|377; (*GB) gi|310813975|gb|ADP30799.1| (e_value=0.0) nicotine uptake permease 2 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=2e-103) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=1e-104) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00028802g0013.1 protein AED:0.17 eAED:0.18 QI:0|1|0.75|1|0.66|0.75|4|390|192; (*GB) gi|357487425|ref|XP_003614000.1| (e_value=4e-52) hypothetical protein MTR_5g043580 [Medicago truncatula];; (*TAIR) AT2G03420.1 (e_value=2e-42) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170;; (*ITAG) Solyc05g012600.2.1 (e_value=2e-79) genomic_reference:SL2.40ch05 gene_region:5809514-5811188 transcript_region:SL2.40ch05:5809514..5811188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028802g0012.1 protein AED:0.20 eAED:0.20 QI:48|1|0|1|1|0.5|2|0|50; (*GB) gi|255542108|ref|XP_002512118.1| (e_value=6e-18) ankyrin repeat-containing protein, putative [Ricinus communis];; (*TAIR) AT2G03430.1 (e_value=6e-18) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc05g012590.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:5805482-5808679 transcript_region:SL2.40ch05:5805482..5808679+ go_terms:GO:0008134 functional_description:"Ankyrin repeat and KH domain-containing protein 1 (AHRD V1 **-- ANKH1_HUMAN); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00028802g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.87|0.66|1|0.5|0.66|9|0|314; (*GB) gi|255542114|ref|XP_002512121.1| (e_value=7e-141) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G03390.1 (e_value=2e-123) | Symbols: | uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330;; (*ITAG) Solyc05g012620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5826134-5829446 transcript_region:SL2.40ch05:5826134..5829446+ go_terms:GO:0006289 functional_description:"Hemimethylated DNA binding protein (AHRD V1 *-*- B0T8J4_CAUSK); contains Interpro domain(s) IPR011722 Hemimethylated DNA-binding region "; GO:0006289 NbS00002921g0017.1 protein AED:0.01 eAED:0.04 QI:0|0.8|0.66|1|1|1|6|138|471; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*TAIR) AT5G46640.1 (e_value=1e-57) | Symbols: | AT hook motif DNA-binding family protein | chr5:18924670-18926292 FORWARD LENGTH=386;; (*ITAG) Solyc08g077030.2.1 (e_value=3e-129) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00002921g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|155; (*GB) gi|224126295|ref|XP_002329519.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17960.1 (e_value=8e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9971154-9972227 FORWARD LENGTH=154;; (*ITAG) Solyc08g077040.2.1 (e_value=7e-71) genomic_reference:SL2.40ch08 gene_region:58148198-58152220 transcript_region:SL2.40ch08:58148198..58152220+ functional_description:"Genomic DNA chromosome 5 BAC clone F10E10 (AHRD V1 *-*- Q9FG56_ARATH)"; NbS00034336g0013.1 protein AED:0.09 eAED:0.09 QI:169|0.66|0.25|1|0.33|0.5|4|0|365; (*GB) gi|356503992|ref|XP_003520783.1| (e_value=6e-42) PREDICTED: uncharacterized protein LOC100809473 [Glycine max];; (*SWP) sp|Q9M069|E137_ARATH (e_value=2e-24) Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2;; (*TAIR) AT1G09460.1 (e_value=6e-37) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:3053901-3055090 FORWARD LENGTH=330;; (*ITAG) Solyc01g101120.2.1 (e_value=4e-88) genomic_reference:SL2.40ch01 gene_region:82731870-82734442 transcript_region:SL2.40ch01:82731870..82734442+ functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B4FGE4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00034336g0009.1 protein AED:0.10 eAED:0.10 QI:57|0.92|1|1|0.84|0.85|14|424|593; (*GB) gi|225450462|ref|XP_002276683.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase haspin-like [Vitis vinifera];; (*SWP) sp|Q2KIP2|HASP_BOVIN (e_value=7e-46) Serine/threonine-protein kinase haspin OS=Bos taurus GN=GSG2 PE=2 SV=1;; (*TAIR) AT1G09450.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3049066-3052858 FORWARD LENGTH=599;; (*ITAG) Solyc01g101110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82721364-82727829 transcript_region:SL2.40ch01:82721364..82727829+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase Haspin (AHRD V1 *--- B6JWA5_SCHJY); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00034336g0011.1 protein AED:0.29 eAED:0.29 QI:0|1|0.4|1|1|1|5|0|348; (*GB) gi|359487694|ref|XP_002276639.2| (e_value=1e-154) PREDICTED: uncharacterized protein LOC100259639 [Vitis vinifera];; (*TAIR) AT5G26770.1 (e_value=1e-126) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9407981-9409735 REVERSE LENGTH=335;; (*ITAG) Solyc01g101130.2.1 (e_value=5e-173) genomic_reference:SL2.40ch01 gene_region:82735376-82738361 transcript_region:SL2.40ch01:82735376..82738361- functional_description:"Plant IF-like protein (AHRD V1 ***- B6TAT2_MAIZE)"; NbS00028265g0005.1 protein AED:0.22 eAED:0.22 QI:331|1|1|1|0|0.5|2|278|281; (*GB) gi|50346893|gb|AAT75153.1| (e_value=1e-136) short-chain dehydrogenase/reductase [Solanum tuberosum];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=3e-116) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=2e-117) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc04g071940.2.1 (e_value=1e-138) genomic_reference:SL2.40ch04 gene_region:56541320-56546303 transcript_region:SL2.40ch04:56541320..56546303- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00028265g0003.1 protein AED:0.30 eAED:0.36 QI:90|1|0.5|1|1|0.5|2|595|174; (*GB) gi|359493155|ref|XP_003634525.1| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100854917 [Vitis vinifera];; (*TAIR) AT1G22790.2 (e_value=7e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:8070271-8071292 FORWARD LENGTH=216;; (*ITAG) Solyc04g071970.2.1 (e_value=6e-92) genomic_reference:SL2.40ch04 gene_region:56571411-56574425 transcript_region:SL2.40ch04:56571411..56574425- functional_description:"Light stress-responsive one-helix protein-like (AHRD V1 ***- Q5ZC72_ORYSJ)"; NbS00027907g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.2|1|1|5|0|258; (*ITAG) Solyc00g005870.1.1 (e_value=7e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3435133-3436360 transcript_region:SL2.40ch00:3435133..3436360- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00027907g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.25|1|1|4|0|216; (*GB) gi|198250343|gb|ACH85188.1| (e_value=1e-18) main allergen 15 kDa oleosin [Sesamum indicum];; (*SWP) sp|Q43284|OLEO3_ARATH (e_value=5e-19) Oleosin 14.9 kDa OS=Arabidopsis thaliana GN=OL3 PE=2 SV=2;; (*TAIR) AT5G51210.1 (e_value=4e-20) | Symbols: OLEO3 | oleosin3 | chr5:20820171-20820706 FORWARD LENGTH=141;; (*ITAG) Solyc06g060840.1.1 (e_value=1e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35259037-35259441 transcript_region:SL2.40ch06:35259037..35259441+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q2TM28_COFCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00027907g0002.1 protein AED:0.24 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|255571065|ref|XP_002526483.1| (e_value=4e-16) Flavonol 4'-sulfotransferase, putative [Ricinus communis];; (*TAIR) AT2G03770.1 (e_value=4e-13) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:1150871-1151845 REVERSE LENGTH=324;; (*ITAG) Solyc03g093620.1.1 (e_value=1e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48598697-48599680 transcript_region:SL2.40ch03:48598697..48599680- go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7KQF7_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00005152g0006.1 protein AED:0.00 eAED:0.00 QI:111|1|1|1|0.5|0.33|3|349|194; (*GB) gi|77416921|gb|ABA81856.1| (e_value=2e-133) unknown [Solanum tuberosum];; (*SWP) sp|P49209|RL91_ARATH (e_value=8e-122) 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3;; (*TAIR) AT1G33140.1 (e_value=6e-123) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc08g014550.2.1 (e_value=4e-138) genomic_reference:SL2.40ch08 gene_region:4642663-4644841 transcript_region:SL2.40ch08:4642663..4644841+ go_terms:GO:0003735 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 "; GO:0003735 NbS00005152g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|1|0|0.25|4|0|346; (*GB) gi|297824381|ref|XP_002880073.1| (e_value=3e-128) hypothetical protein ARALYDRAFT_903792 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=2e-100) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43880.1 (e_value=5e-130) | Symbols: | Pectin lyase-like superfamily protein | chr2:18173034-18174482 FORWARD LENGTH=394;; (*ITAG) Solyc08g014560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4650562-4654908 transcript_region:SL2.40ch08:4650562..4654908+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00002518g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.87|0.85|0.97|0.65|0.85|42|0|1574; (*GB) gi|255574420|ref|XP_002528123.1| (e_value=0.0) 1,3-beta-glucan synthase, putative [Ricinus communis];; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=0.0) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2;; (*TAIR) AT3G07160.1 (e_value=0.0) | Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890;; (*ITAG) Solyc01g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:934429-952385 transcript_region:SL2.40ch01:934429..952385- go_terms:GO:0016757 functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8TE42_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00002518g0004.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|1|1|3|0|262; (*GB) gi|356576887|ref|XP_003556561.1| (e_value=5e-34) PREDICTED: uncharacterized protein LOC100810934 [Glycine max];; (*TAIR) AT5G19900.1 (e_value=1e-35) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g015020.2.1 (e_value=1e-35) genomic_reference:SL2.40ch01 gene_region:16607107-16609448 transcript_region:SL2.40ch01:16607107..16609448+ functional_description:"PRLI-interacting factor A (Fragment) (AHRD V1 *-*- Q9FUB4_ARATH)"; NbS00002518g0009.1 protein AED:0.34 eAED:0.50 QI:337|0|0.33|1|0|0|3|0|117 NbS00060330g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|209; (*GB) gi|334902911|gb|AEH25587.1| (e_value=9e-29) transposase [Solanum demissum];; (*ITAG) Solyc04g039710.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00016529g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.8|0.83|1|0.2|0.33|6|2123|212; (*GB) gi|171191094|gb|ACB45099.1| (e_value=5e-37) putative lectin receptor kinase-like protein [Citrus limon];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=3e-38) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=3e-39) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc07g053120.2.1 (e_value=2e-61) genomic_reference:SL2.40ch07 gene_region:58892560-58896857 transcript_region:SL2.40ch07:58892560..58896857- go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 *-** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00012338g0006.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0|1|0|0.5|4|0|156; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=1e-98) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=1e-86) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=1e-87) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00012338g0004.1 protein AED:0.46 eAED:0.50 QI:0|0.25|0|0.8|1|1|5|0|89; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=4e-41) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=6e-20) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=4e-21) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00000993g0108.1 protein AED:0.30 eAED:0.31 QI:0|0.33|0|1|1|1|4|0|169 NbS00000993g0102.1 protein AED:0.12 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|99 NbS00027267g0012.1 protein AED:0.02 eAED:0.02 QI:15|0.5|0|1|0.5|0.33|3|0|1141; (*GB) gi|225444822|ref|XP_002279012.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249046 [Vitis vinifera];; (*TAIR) AT5G20610.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc07g041180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49295574-49299106 transcript_region:SL2.40ch07:49295574..49299106+ go_terms:GO:0006306,GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0006306,GO:0016998 NbS00027267g0011.1 protein AED:0.10 eAED:0.19 QI:0|0.66|0.42|0.85|0.83|0.85|7|0|317; (*GB) gi|380863128|gb|AFF18857.1| (e_value=5e-103) spermidine synthase, partial [Dimocarpus longan];; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=5e-97) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.2 (e_value=3e-98) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591070 REVERSE LENGTH=332;; (*ITAG) Solyc07g041300.1.1 (e_value=8e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:49559423-49563100 transcript_region:SL2.40ch07:49559423..49563100- go_terms:GO:0016768,GO:0010487 functional_description:"Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0016768,GO:0010487 NbS00027267g0010.1 protein AED:0.27 eAED:0.27 QI:385|1|1|1|0.71|0.87|8|477|375; (*GB) gi|225444824|ref|XP_002280579.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein C776.05-like [Vitis vinifera];; (*SWP) sp|O94673|YG75_SCHPO (e_value=1e-33) Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.05 PE=2 SV=1;; (*TAIR) AT5G35460.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13672598-13674546 FORWARD LENGTH=381;; (*ITAG) Solyc07g041160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49272644-49276387 transcript_region:SL2.40ch07:49272644..49276387- functional_description:"Uncharacterized membrane protein C776.05 (AHRD V1 **-- YG75_SCHPO)"; NbS00053043g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|0.66|3|0|571; (*GB) gi|255571071|ref|XP_002526486.1| (e_value=9e-147) 1-phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=2e-18) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT4G17080.1 (e_value=9e-116) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr4:9601570-9603815 FORWARD LENGTH=513;; (*ITAG) Solyc10g061960.1.1 (e_value=3e-163) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54554571-54559270 transcript_region:SL2.40ch10:54554571..54559270+ go_terms:GO:0042302 functional_description:"MORN repeat-containing protein (AHRD V1 *--- A4WSX3_RHOS5); contains Interpro domain(s) IPR003409 MORN motif "; GO:0042302 NbS00046588g0003.1 protein AED:0.15 eAED:0.21 QI:72|0.4|0.33|1|1|1|6|0|325; (*GB) gi|255565132|ref|XP_002523558.1| (e_value=1e-137) Patatin precursor, putative [Ricinus communis];; (*SWP) sp|Q2MY56|PATD2_SOLTU (e_value=8e-64) Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G26560.1 (e_value=3e-99) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407;; (*ITAG) Solyc04g079240.2.1 (e_value=2e-114) genomic_reference:SL2.40ch04 gene_region:61350800-61354292 transcript_region:SL2.40ch04:61350800..61354292- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00018594g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|0.66|3|0|626; (*GB) gi|83281193|dbj|BAD15110.2| (e_value=0.0) similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum];; (*SWP) sp|Q2R1U4|CK5P1_ORYSJ (e_value=0.0) CDK5RAP1-like protein OS=Oryza sativa subsp. japonica GN=Os11g0592800 PE=2 SV=1;; (*TAIR) AT4G36390.1 (e_value=0.0) | Symbols: | Methylthiotransferase | chr4:17194746-17197054 REVERSE LENGTH=640;; (*ITAG) Solyc02g084750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42428791-42433753 transcript_region:SL2.40ch02:42428791..42433753- go_terms:GO:0042808 functional_description:"(Dimethylallyl)adenosine tRNA methylthiotransferase miaB (AHRD V1 ***- MIAB_SALRD); contains Interpro domain(s) IPR006463 tRNA-i(6)A37 modification enzyme MiaB "; GO:0042808 NbS00018594g0004.1 protein AED:0.29 eAED:0.29 QI:144|0.90|0.91|1|0.90|0.83|12|339|341; (*GB) gi|255560994|ref|XP_002521509.1| (e_value=2e-164) folate carrier protein, putative [Ricinus communis];; (*SWP) sp|Q8BMG8|MFTC_MOUSE (e_value=3e-69) Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1;; (*TAIR) AT5G66380.1 (e_value=3e-156) | Symbols: ATFOLT1, FOLT1 | folate transporter 1 | chr5:26513645-26515533 REVERSE LENGTH=308;; (*ITAG) Solyc02g084770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42445259-42451999 transcript_region:SL2.40ch02:42445259..42451999- go_terms:GO:0008517 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q6AVS9_ORYSJ); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0008517 NbS00018594g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0.5|1|0|0.5|2|88|111; (*GB) gi|224094877|ref|XP_002310275.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G70190.2 (e_value=2e-17) | Symbols: | Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like | chr1:26430616-26431242 FORWARD LENGTH=208;; (*ITAG) Solyc02g088760.2.1 (e_value=3e-27) genomic_reference:SL2.40ch02 gene_region:45308225-45311023 transcript_region:SL2.40ch02:45308225..45311023- go_terms:GO:0005840 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005840 NbS00018594g0002.1 protein AED:0.36 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|138; (*ITAG) Solyc02g088760.2.1 (e_value=8e-45) genomic_reference:SL2.40ch02 gene_region:45308225-45311023 transcript_region:SL2.40ch02:45308225..45311023- go_terms:GO:0005840 functional_description:"50S ribosomal protein L12-2 (AHRD V1 ***- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005840 NbS00018594g0009.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.25|1|1|4|0|152; (*GB) gi|326498999|dbj|BAK05990.1| (e_value=3e-22) predicted protein [Hordeum vulgare subsp. vulgare];; (*ITAG) Solyc08g007350.1.1 (e_value=8e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00018594g0020.1 protein AED:0.34 eAED:0.34 QI:154|0.8|0.83|1|0.4|0.66|6|337|124; (*GB) gi|148841111|gb|ABR14728.1| (e_value=2e-67) ubiquitin conjugating enzyme [Gossypium hirsutum];; (*SWP) sp|Q9FMM0|UBC18_ARATH (e_value=1e-63) Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1;; (*TAIR) AT5G42990.1 (e_value=1e-64) | Symbols: UBC18 | ubiquitin-conjugating enzyme 18 | chr5:17244206-17245904 REVERSE LENGTH=161;; (*ITAG) Solyc02g084760.2.1 (e_value=4e-68) genomic_reference:SL2.40ch02 gene_region:42439595-42444201 transcript_region:SL2.40ch02:42439595..42444201+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00042991g0008.1 protein AED:0.25 eAED:0.25 QI:34|0.90|0.58|1|0.63|0.75|12|529|663; (*GB) gi|359484370|ref|XP_002281316.2| (e_value=6e-157) PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera];; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=1e-21) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT4G13350.2 (e_value=3e-60) | Symbols: NIG | NSP (nuclear shuttle protein)-interacting GTPase | chr4:7770170-7773321 REVERSE LENGTH=602;; (*ITAG) Solyc12g006990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1421085-1429147 transcript_region:SL2.40ch12:1421085..1429147- go_terms:GO:0005525,GO:0003924 functional_description:"Arf GTPase activating protein (AHRD V1 *--* D3B391_POLPA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0005525,GO:0003924 NbS00042991g0009.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0|4|0|749; (*GB) gi|224143492|ref|XP_002324974.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHF1|LRX4_ARATH (e_value=2e-180) Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1;; (*TAIR) AT3G24480.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:8901154-8902638 REVERSE LENGTH=494;; (*ITAG) Solyc12g006980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1411568-1413751 transcript_region:SL2.40ch12:1411568..1413751+ go_terms:GO:0004675 functional_description:"Leucine-rich repeat receptor-like protein kinase PEPR2 (AHRD V1 *--* PEPR2_ARATH); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0004675 NbS00028097g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.69|0.5|0.92|1|1|14|0|2752; (*GB) gi|359473525|ref|XP_003631315.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265010 [Vitis vinifera];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=3e-52) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT1G65810.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1050;; (*ITAG) Solyc03g006480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1060111-1071427 transcript_region:SL2.40ch03:1060111..1071427- go_terms:GO:0016787 functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY); contains Interpro domain(s) IPR014016 Helicase, superfamily 1, UvrD-related "; GO:0016787 NbS00028097g0009.1 protein AED:0.12 eAED:0.13 QI:11|0|0|1|0|0|2|0|165; (*GB) gi|225446795|ref|XP_002283251.1| (e_value=7e-32) PREDICTED: NAC domain-containing protein 42 [Vitis vinifera];; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=1e-28) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=8e-30) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc07g045030.2.1 (e_value=7e-40) genomic_reference:SL2.40ch07 gene_region:55436220-55441033 transcript_region:SL2.40ch07:55436220..55441033+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00056618g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|3|0|418; (*GB) gi|307136193|gb|ADN34032.1| (e_value=7e-110) leucine-rich repeat family protein [Cucumis melo subsp. melo];; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=1e-16) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT4G18760.1 (e_value=7e-86) | Symbols: AtRLP51, RLP51 | receptor like protein 51 | chr4:10308163-10309458 REVERSE LENGTH=431;; (*ITAG) Solyc02g072250.1.1 (e_value=4e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36134785-36135969 transcript_region:SL2.40ch02:36134785..36135969+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00008215g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.4|0.16|1|1|1|6|0|767; (*GB) gi|350534654|ref|NP_001233896.1| (e_value=0.0) trehalose-6-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9ZV48|TPS11_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 11 OS=Arabidopsis thaliana GN=TPS11 PE=2 SV=1;; (*TAIR) AT2G18700.1 (e_value=0.0) | Symbols: ATTPS11, TPS11, ATTPSB | trehalose phosphatase/synthase 11 | chr2:8109043-8111799 FORWARD LENGTH=862;; (*ITAG) Solyc07g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1301353-1304574 transcript_region:SL2.40ch07:1301353..1304574+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** D2REU5_ARCPA); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00000156g0017.1 protein AED:0.09 eAED:0.11 QI:0|0.85|0.62|1|1|1|8|0|419; (*GB) gi|255553564|ref|XP_002517823.1| (e_value=8e-146) Polygalacturonase precursor, putative [Ricinus communis];; (*SWP) sp|P35336|PGLR_ACTDE (e_value=2e-138) Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1;; (*TAIR) AT3G07970.1 (e_value=3e-130) | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439;; (*ITAG) Solyc01g087280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73976402-73980711 transcript_region:SL2.40ch01:73976402..73980711+ go_terms:GO:0004650 functional_description:"Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0004650 NbS00000156g0020.1 protein AED:0.30 eAED:0.30 QI:173|0.92|1|1|0.76|0.78|14|466|463; (*GB) gi|350538577|ref|NP_001233838.1| (e_value=0.0) carotenoid cleavage dioxygenase 1-2 [Solanum lycopersicum];; (*SWP) sp|Q84KG5|CCD_CROSA (e_value=0.0) Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1;; (*TAIR) AT3G63520.1 (e_value=0.0) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538;; (*ITAG) Solyc01g087260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73957796-73970716 transcript_region:SL2.40ch01:73957796..73970716- go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase 1B"; GO:0045549 NbS00010047g0001.1 protein AED:0.22 eAED:0.22 QI:148|0.8|0.83|1|0.8|0.66|6|673|336; (*GB) gi|356543538|ref|XP_003540217.1| (e_value=5e-122) PREDICTED: splicing factor U2af small subunit A-like [Glycine max];; (*SWP) sp|Q9FMY5|U2AFB_ARATH (e_value=4e-104) Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=3e-105) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc11g066830.1.1 (e_value=2e-130) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00010860g0012.1 protein AED:0.19 eAED:0.19 QI:202|1|0.33|1|0.5|0.66|3|0|161; (*GB) gi|225439213|ref|XP_002276082.1| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100241525 [Vitis vinifera];; (*TAIR) AT5G17840.1 (e_value=1e-45) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr5:5895879-5897055 REVERSE LENGTH=154;; (*ITAG) Solyc10g081380.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61790717-61792527 transcript_region:SL2.40ch10:61790717..61792527- go_terms:GO:0006457 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00010860g0013.1 protein AED:0.34 eAED:0.34 QI:142|0.8|0.83|1|0.6|0.66|6|274|148; (*GB) gi|255569472|ref|XP_002525703.1| (e_value=6e-59) HSP90 co-chaperone, putative [Ricinus communis];; (*SWP) sp|Q6ID70|Y3377_ARATH (e_value=3e-51) Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1;; (*TAIR) AT3G03773.1 (e_value=2e-52) | Symbols: | HSP20-like chaperones superfamily protein | chr3:951885-953490 FORWARD LENGTH=150;; (*ITAG) Solyc10g081360.1.1 (e_value=2e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61781989-61786030 transcript_region:SL2.40ch10:61781989..61786030- functional_description:"Tyrosine phosphatase-like protein ptplad1 (AHRD V1 **-- B9EMH6_SALSA); contains Interpro domain(s) IPR017447 CS "; NbS00010860g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|0|305; (*GB) gi|359487036|ref|XP_003633507.1| (e_value=4e-98) PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LES3|AI5L2_ARATH (e_value=2e-67) ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1;; (*TAIR) AT3G56850.1 (e_value=2e-68) | Symbols: AREB3, DPBF3 | ABA-responsive element binding protein 3 | chr3:21046554-21047894 REVERSE LENGTH=297;; (*ITAG) Solyc10g081350.1.1 (e_value=2e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61775875-61780773 transcript_region:SL2.40ch10:61775875..61780773+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00010860g0014.1 protein AED:0.05 eAED:0.05 QI:88|1|1|1|1|1|5|242|88; (*GB) gi|225468340|ref|XP_002272246.1| (e_value=5e-54) PREDICTED: probable small nuclear ribonucleoprotein F [Vitis vinifera];; (*SWP) sp|Q9SUM2|RUXF_ARATH (e_value=7e-53) Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1;; (*TAIR) AT4G30220.1 (e_value=5e-54) | Symbols: RUXF | small nuclear ribonucleoprotein F | chr4:14803100-14804259 REVERSE LENGTH=88;; (*ITAG) Solyc10g081370.1.1 (e_value=7e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61786900-61789542 transcript_region:SL2.40ch10:61786900..61789542+ go_terms:GO:0005634 functional_description:"Small nuclear ribonucleoprotein F (AHRD V1 **-- B6TPP2_MAIZE); contains Interpro domain(s) IPR016487 Small nuclear ribonucleoprotein SmF "; GO:0005634 NbS00009358g0004.1 protein AED:0.37 eAED:0.38 QI:0|0.83|0.69|0.92|1|1|13|0|477; (*GB) gi|46095233|gb|AAP79443.2| (e_value=0.0) glycerol-3-phosphate acyltransferase [Capsicum annuum];; (*SWP) sp|Q39639|PLSB_CUCSA (e_value=0.0) Glycerol-3-phosphate acyltransferase, chloroplastic OS=Cucumis sativus PE=2 SV=1;; (*TAIR) AT1G32200.2 (e_value=0.0) | Symbols: ATS1, ACT1 | phospholipid/glycerol acyltransferase family protein | chr1:11602223-11605001 REVERSE LENGTH=459;; (*ITAG) Solyc08g076470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57639436-57652592 transcript_region:SL2.40ch08:57639436..57652592+ go_terms:GO:0004366 functional_description:"Glycerol-3-phosphate acyltransferase (AHRD V1 **** Q7XYH5_CAPAN); contains Interpro domain(s) IPR016222 Glycerol-3-phosphate O-acyltransferase "; GO:0004366 NbS00001287g0006.1 protein AED:0.04 eAED:0.06 QI:0|0.4|0.33|1|0.4|0.16|6|0|549; (*GB) gi|255554891|ref|XP_002518483.1| (e_value=4e-133) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g031660.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:8390034-8394716 transcript_region:SL2.40ch03:8390034..8394716- functional_description:"Unknown Protein (AHRD V1)"; NbS00009305g0001.1 protein AED:0.00 eAED:0.00 QI:152|0|0.5|1|0|1|2|40|327; (*GB) gi|7839365|gb|AAF70243.1|AF213968_1 (e_value=0.0) S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum];; (*SWP) sp|Q55467|CHLM_SYNY3 (e_value=3e-87) Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=chlM PE=3 SV=1;; (*TAIR) AT4G25080.5 (e_value=5e-146) | Symbols: CHLM | magnesium-protoporphyrin IX methyltransferase | chr4:12877015-12878128 FORWARD LENGTH=312;; (*ITAG) Solyc03g118240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61214116-61216115 transcript_region:SL2.40ch03:61214116..61216115- go_terms:GO:0046406 functional_description:"Magnesium-protoporphyrin ix methyltransferase (AHRD V1 **** D7MGJ7_ARALY); contains Interpro domain(s) IPR010251 Magnesium protoporphyrin O-methyltransferase "; GO:0046406 NbS00009305g0012.1 protein AED:0.11 eAED:0.11 QI:190|0.5|0.2|1|0.25|0.6|5|419|921; (*GB) gi|359475765|ref|XP_002273555.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIT7|PP442_ARATH (e_value=1e-167) Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1;; (*TAIR) AT5G61990.1 (e_value=8e-169) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24900186-24903110 REVERSE LENGTH=974;; (*ITAG) Solyc03g118280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009305g0003.1 protein AED:0.09 eAED:0.09 QI:319|0.85|0.80|0.95|1|1|21|656|822; (*GB) gi|224072473|ref|XP_002303749.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5W7F2|AGD3_ARATH (e_value=0.0) ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1;; (*TAIR) AT5G13300.1 (e_value=0.0) | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827;; (*ITAG) Solyc03g118260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61224742-61239157 transcript_region:SL2.40ch03:61224742..61239157+ go_terms:GO:0005515 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--- AGAP3_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0005515 NbS00043109g0004.1 protein AED:0.26 eAED:0.26 QI:153|0.89|0.85|1|0.78|0.8|20|0|533; (*GB) gi|225462352|ref|XP_002265957.1| (e_value=0.0) PREDICTED: CTP synthase [Vitis vinifera];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=0.0) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT1G30820.1 (e_value=0.0) | Symbols: | CTP synthase family protein | chr1:10945251-10948825 REVERSE LENGTH=600;; (*ITAG) Solyc02g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40468742-40474353 transcript_region:SL2.40ch02:40468742..40474353+ go_terms:GO:0003883,GO:0042802 functional_description:"CTP synthase (AHRD V1 **** B6U7R1_MAIZE); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0003883,GO:0042802 NbS00028964g0002.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|0|0|2|468|162; (*GB) gi|302774715|ref|XP_002970774.1| (e_value=2e-35) hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=7e-30) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=5e-31) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc10g081880.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62143415-62146156 transcript_region:SL2.40ch10:62143415..62146156- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00034710g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|146 NbS00034710g0005.1 protein AED:0.05 eAED:0.08 QI:86|1|0.5|1|1|1|2|148|148; (*GB) gi|347990630|gb|AEP40484.1| (e_value=1e-62) manganese tolerance protein 2 [Beta vulgaris subsp. maritima];; (*SWP) sp|Q9SAJ7|MTP9_ARATH (e_value=1e-58) Metal tolerance protein 9 OS=Arabidopsis thaliana GN=MTP9 PE=2 SV=2;; (*TAIR) AT1G79520.1 (e_value=1e-59) | Symbols: | Cation efflux family protein | chr1:29912369-29914515 REVERSE LENGTH=402;; (*ITAG) Solyc10g005500.2.1 (e_value=2e-62) genomic_reference:SL2.40ch10 gene_region:414474-416809 transcript_region:SL2.40ch10:414474..416809- go_terms:GO:0016020 functional_description:"Cation diffusion facilitator 9 (AHRD V1 **-- Q84ND5_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00003675g0015.1 protein AED:0.06 eAED:0.07 QI:0|1|0|1|1|0|2|0|467; (*GB) gi|125526501|gb|EAY74615.1| (e_value=5e-28) hypothetical protein OsI_02503 [Oryza sativa Indica Group];; (*SWP) sp|Q657C0|HFA6B_ORYSJ (e_value=2e-29) Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1;; (*TAIR) AT5G03720.1 (e_value=8e-27) | Symbols: AT-HSFA3, HSFA3 | heat shock transcription factor A3 | chr5:971913-973683 REVERSE LENGTH=412;; (*ITAG) Solyc02g079180.1.1 (e_value=2e-121) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38366347-38367682 transcript_region:SL2.40ch02:38366347..38367682- go_terms:GO:0005634 functional_description:"Heat shock transcription factor 1 (AHRD V1 *-*- Q008S1_MEDSA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005634 NbS00003675g0003.1 protein AED:0.08 eAED:0.08 QI:352|0.8|0.81|1|0.9|0.81|11|382|547; (*GB) gi|388505494|gb|AFK40813.1| (e_value=0.0) unknown [Lotus japonicus];; (*SWP) sp|F2Z699|NDH2_YARLI (e_value=2e-103) External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1;; (*TAIR) AT4G05020.1 (e_value=0.0) | Symbols: NDB2 | NAD(P)H dehydrogenase B2 | chr4:2572752-2576222 FORWARD LENGTH=582;; (*ITAG) Solyc02g079170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38360060-38365669 transcript_region:SL2.40ch02:38360060..38365669+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00003675g0004.1 protein AED:0.11 eAED:0.13 QI:0|0|0|1|1|1|2|0|404; (*GB) gi|255567409|ref|XP_002524684.1| (e_value=2e-11) hypothetical protein RCOM_1095870 [Ricinus communis];; (*ITAG) Solyc02g079160.2.1 (e_value=6e-33) genomic_reference:SL2.40ch02 gene_region:38350501-38351740 transcript_region:SL2.40ch02:38350501..38351740+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003675g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.62|0.55|0.88|1|1|9|186|592; (*GB) gi|302144182|emb|CBI23309.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9BUJ2|HNRL1_HUMAN (e_value=8e-70) Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo sapiens GN=HNRNPUL1 PE=1 SV=2;; (*ITAG) Solyc02g079140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38325262-38330901 transcript_region:SL2.40ch02:38325262..38330901- functional_description:"Heterogeneous nuclear ribonucleoprotein U-like protein 1 (AHRD V1 *-*- B6UCI9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; NbS00003675g0006.1 protein AED:0.80 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|142 NbS00001031g0006.1 protein AED:0.33 eAED:0.33 QI:249|0.5|0.55|1|0.75|0.88|9|0|479; (*GB) gi|225424297|ref|XP_002284658.1| (e_value=1e-149) PREDICTED: uncharacterized protein LOC100264607 isoform 1 [Vitis vinifera];; (*TAIR) AT1G70770.2 (e_value=1e-139) | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:26688622-26691185 REVERSE LENGTH=610;; (*ITAG) Solyc05g026540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:41738472-41744946 transcript_region:SL2.40ch05:41738472..41744946+ functional_description:"Transmembrane protein 214 (AHRD V1 *-*- TM214_BOVIN)"; NbS00036633g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.5|1|1|1|4|0|334; (*GB) gi|53749440|gb|AAU90296.1| (e_value=0.0) Putative pyridine nucleotide-disulphide oxidoreductase, identical [Solanum demissum];; (*SWP) sp|Q54NS8|AIFB_DICDI (e_value=9e-40) Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1;; (*TAIR) AT3G44190.1 (e_value=2e-144) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367;; (*ITAG) Solyc11g071990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52375127-52377545 transcript_region:SL2.40ch11:52375127..52377545+ functional_description:"Nitric oxide reductase FlRd-NAD(+) reductase (AHRD V1 **-- NORW_VIBFM); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; NbS00022383g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.57|0.5|1|0.42|0.5|8|458|412; (*GB) gi|356543574|ref|XP_003540235.1| (e_value=2e-102) PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max];; (*SWP) sp|Q66GI4|PP179_ARATH (e_value=2e-68) Pentatricopeptide repeat-containing protein At2g32230, mitochondrial OS=Arabidopsis thaliana GN=At2g32230 PE=2 SV=1;; (*TAIR) AT2G16650.1 (e_value=1e-96) | Symbols: PRORP2 | proteinaceous RNase P 2 | chr2:7215937-7218061 REVERSE LENGTH=528;; (*ITAG) Solyc06g074400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42410551-42418219 transcript_region:SL2.40ch06:42410551..42418219- go_terms:GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial (AHRD V1 **-- PP179_ARATH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00054117g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|359494589|ref|XP_002270779.2| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100261047 [Vitis vinifera];; (*TAIR) AT1G72250.2 (e_value=2e-26) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr1:27192902-27198118 FORWARD LENGTH=1203;; (*ITAG) Solyc12g011290.1.1 (e_value=7e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4145546-4151148 transcript_region:SL2.40ch12:4145546..4151148+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00000984g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|4|0|507; (*GB) gi|255551981|ref|XP_002517035.1| (e_value=0.0) acyltransferase, putative [Ricinus communis];; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=7e-179) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=6e-180) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc05g013220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6279749-6282303 transcript_region:SL2.40ch05:6279749..6282303- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00043813g0010.1 protein AED:0.02 eAED:0.02 QI:53|1|1|1|0.9|0.90|11|472|952; (*GB) gi|359497108|ref|XP_002269337.2| (e_value=0.0) PREDICTED: DNA repair endonuclease UVH1-like [Vitis vinifera];; (*SWP) sp|Q9LKI5|XPF_ARATH (e_value=0.0) DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2;; (*TAIR) AT5G41150.1 (e_value=0.0) | Symbols: UVH1, ATRAD1, RAD1 | Restriction endonuclease, type II-like superfamily protein | chr5:16473044-16476919 REVERSE LENGTH=956;; (*ITAG) Solyc08g077800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58874072-58880667 transcript_region:SL2.40ch08:58874072..58880667+ go_terms:GO:0000014 functional_description:"DNA repair endonuclease XPF (AHRD V1 **-* C1J9L6_LIZAU); contains Interpro domain(s) IPR006166 DNA repair nuclease, XPF-type/Helicase "; GO:0000014 NbS00043813g0009.1 protein AED:0.05 eAED:0.06 QI:0|1|0.8|1|1|1|5|0|566; (*GB) gi|356513779|ref|XP_003525587.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like [Glycine max];; (*SWP) sp|Q9SQZ0|CAAT7_ARATH (e_value=1e-151) Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1;; (*TAIR) AT3G10600.1 (e_value=1e-152) | Symbols: CAT7 | cationic amino acid transporter 7 | chr3:3313969-3317162 FORWARD LENGTH=584;; (*ITAG) Solyc08g077820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58892678-58895481 transcript_region:SL2.40ch08:58892678..58895481- go_terms:GO:0015326,GO:0005289 functional_description:"Cationic amino acid transporter (AHRD V1 **** B9HVV3_POPTR); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0015326,GO:0005289 NbS00043813g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|113205274|gb|ABI34321.1| (e_value=7e-21) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00016880g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|110 NbS00016880g0009.1 protein AED:0.22 eAED:0.24 QI:0|0.83|0.83|1|0.76|0.87|31|0|1143; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=0.0) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.2 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1115;; (*ITAG) Solyc05g055090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00004822g0004.1 protein AED:0.11 eAED:0.13 QI:1701|0.5|0.71|1|0.5|0.71|7|315|516; (*GB) gi|225447223|ref|XP_002277857.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 52 [Vitis vinifera];; (*SWP) sp|Q8GY60|P2C52_ARATH (e_value=0.0) Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1;; (*TAIR) AT4G03415.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:1503789-1505510 REVERSE LENGTH=468;; (*ITAG) Solyc07g054300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59978549-59982341 transcript_region:SL2.40ch07:59978549..59982341+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00010973g0003.1 protein AED:0.12 eAED:0.12 QI:275|1|0.88|1|1|1|18|212|599; (*GB) gi|255554262|ref|XP_002518171.1| (e_value=0.0) chaperonin-60kD, ch60, putative [Ricinus communis];; (*SWP) sp|Q05046|CH62_CUCMA (e_value=0.0) Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1;; (*TAIR) AT3G23990.1 (e_value=0.0) | Symbols: HSP60, HSP60-3B | heat shock protein 60 | chr3:8669013-8672278 FORWARD LENGTH=577;; (*ITAG) Solyc05g053470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62706122-62712174 transcript_region:SL2.40ch05:62706122..62712174+ go_terms:GO:0005524,GO:0005507 functional_description:"chaperonin (AHRD V1 ***- D2LE93_RHOVA); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0005524,GO:0005507 NbS00038315g0005.1 protein AED:0.03 eAED:0.03 QI:599|1|1|1|1|1|2|430|500; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=7e-123) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=5e-124) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc04g054220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51178522-51181311 transcript_region:SL2.40ch04:51178522..51181311- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00048393g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.6|1|0.5|0.6|5|616|139; (*GB) gi|5669654|gb|AAD46412.1|AF096262_1 (e_value=3e-78) ER6 protein [Solanum lycopersicum];; (*TAIR) AT1G09740.1 (e_value=4e-57) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3154603-3155834 FORWARD LENGTH=171;; (*ITAG) Solyc04g076200.2.1 (e_value=6e-71) genomic_reference:SL2.40ch04 gene_region:58724666-58728561 transcript_region:SL2.40ch04:58724666..58728561- go_terms:GO:0003677 functional_description:"Universal stress protein family protein (AHRD V1 **-- D7LAT3_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0003677 NbS00059781g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|730; (*GB) gi|37964399|gb|AAR06252.1| (e_value=0.0) stigma/style ABC transporter [Nicotiana tabacum];; (*SWP) sp|Q9M2V7|AB16G_ARATH (e_value=0.0) ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2;; (*TAIR) AT3G55090.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr3:20416342-20418552 REVERSE LENGTH=736;; (*ITAG) Solyc04g010200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3520574-3522730 transcript_region:SL2.40ch04:3520574..3522730+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 6 (AHRD V1 ***- AB6G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00060391g0005.1 protein AED:0.29 eAED:0.28 QI:193|0.66|0.85|1|1|1|7|229|523; (*GB) gi|297744586|emb|CBI37848.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G34360.1 (e_value=4e-29) | Symbols: | translation initiation factor 3 (IF-3) family protein | chr1:12542986-12546025 FORWARD LENGTH=520;; (*ITAG) Solyc01g111720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89656389-89663337 transcript_region:SL2.40ch01:89656389..89663337- go_terms:GO:0006413 functional_description:"Translation initiation factor IF-3 (AHRD V1 *-*- D4YMH3_9MICO); contains Interpro domain(s) IPR001288 Translation initiation factor 3 "; GO:0006413 NbS00035246g0001.1 protein AED:0.06 eAED:0.06 QI:1648|0|0.5|1|0|1|2|0|127; (*GB) gi|224119828|ref|XP_002331171.1| (e_value=3e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54EH2|RPAB1_DICDI (e_value=1e-44) DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2;; (*TAIR) AT3G22320.1 (e_value=6e-76) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=4e-82) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00035246g0002.1 protein AED:0.00 eAED:0.00 QI:170|1|1|1|1|1|2|658|249; (*GB) gi|37572445|dbj|BAC98492.1| (e_value=9e-81) AG-motif binding protein-2 [Nicotiana tabacum];; (*SWP) sp|Q8LAU9|GATA1_ARATH (e_value=3e-40) GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2;; (*TAIR) AT3G24050.1 (e_value=2e-41) | Symbols: GATA1 | GATA transcription factor 1 | chr3:8686060-8687462 FORWARD LENGTH=274;; (*ITAG) Solyc05g053500.2.1 (e_value=1e-78) genomic_reference:SL2.40ch05 gene_region:62725404-62728002 transcript_region:SL2.40ch05:62725404..62728002+ go_terms:GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00036037g0001.1 protein AED:0.27 eAED:0.54 QI:0|0|0.5|1|0|0|2|106|77 NbS00008404g0015.1 protein AED:0.44 eAED:0.48 QI:0|0|0|0.4|0.5|0.6|5|0|258; (*ITAG) Solyc05g018090.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:20013530-20016331 transcript_region:SL2.40ch05:20013530..20016331- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_PONAB); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00008404g0017.1 protein AED:0.01 eAED:0.01 QI:100|1|0.87|1|0.57|0.62|8|279|876; (*GB) gi|359492711|ref|XP_002280739.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254089 [Vitis vinifera];; (*SWP) sp|Q99L90|MCRS1_MOUSE (e_value=3e-12) Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1;; (*TAIR) AT3G54350.3 (e_value=2e-73) | Symbols: emb1967 | Forkhead-associated (FHA) domain-containing protein | chr3:20122298-20126031 REVERSE LENGTH=702;; (*ITAG) Solyc07g032510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:39239627-39259864 transcript_region:SL2.40ch07:39239627..39259864+ functional_description:"Microspherule protein 1 (AHRD V1 *-*- Q5BJR5_RAT); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00008404g0016.1 protein AED:0.06 eAED:0.11 QI:0|0|0|1|0|0|3|0|130; (*ITAG) Solyc03g044840.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00035197g0001.1 protein AED:0.00 eAED:0.00 QI:454|1|1|1|0|0|3|285|36 NbS00032405g0006.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.33|1|1|3|0|122 NbS00032405g0003.1 protein AED:0.09 eAED:0.11 QI:1192|0.33|0.75|1|0|0.25|4|881|116; (*ITAG) Solyc03g083000.2.1 (e_value=3e-33) genomic_reference:SL2.40ch03 gene_region:46392787-46395384 transcript_region:SL2.40ch03:46392787..46395384+ functional_description:"AT2G46550 protein (Fragment) (AHRD V1 *-*- B9DHY8_ARATH)"; NbS00032405g0013.1 protein AED:0.17 eAED:0.17 QI:239|0.75|0.77|1|0.62|0.44|9|217|318; (*GB) gi|255561848|ref|XP_002521933.1| (e_value=5e-139) carboxylesterase np, putative [Ricinus communis];; (*TAIR) AT5G53050.3 (e_value=1e-134) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:21510534-21513432 REVERSE LENGTH=396;; (*ITAG) Solyc03g083010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46396642-46403381 transcript_region:SL2.40ch03:46396642..46403381+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MSC9_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00032405g0012.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|0|0|2|0|88; (*ITAG) Solyc08g044370.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00043877g0004.1 protein AED:0.00 eAED:0.00 QI:125|1|1|1|1|1|3|32|502; (*GB) gi|356510814|ref|XP_003524129.1| (e_value=0.0) PREDICTED: polygalacturonase QRT3-like [Glycine max];; (*SWP) sp|O49432|QRT3_ARATH (e_value=8e-123) Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1;; (*TAIR) AT4G20040.1 (e_value=3e-179) | Symbols: | Pectin lyase-like superfamily protein | chr4:10847348-10848963 REVERSE LENGTH=483;; (*ITAG) Solyc02g068410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32938286-32942722 transcript_region:SL2.40ch02:32938286..32942722+ go_terms:GO:0004650 functional_description:"AT4G20050-like protein (Fragment) (AHRD V1 *-*- D6PQZ2_9BRAS); contains Interpro domain(s) IPR011050 Pectin lyase fold/virulence factor "; GO:0004650 NbS00043877g0005.1 protein AED:0.24 eAED:0.30 QI:0|0|0|1|1|1|2|0|163; (*GB) gi|224074133|ref|XP_002304266.1| (e_value=1e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLC6|ATL73_ARATH (e_value=3e-22) RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1;; (*TAIR) AT5G05280.1 (e_value=3e-23) | Symbols: | RING/U-box superfamily protein | chr5:1565509-1566039 REVERSE LENGTH=176;; (*ITAG) Solyc06g049030.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00023820g0007.1 protein AED:0.11 eAED:0.13 QI:0|0.66|0.57|1|0.5|0.57|7|113|343; (*GB) gi|350535657|ref|NP_001234206.1| (e_value=0.0) fructokinase [Solanum lycopersicum];; (*SWP) sp|Q0JGZ6|SCRK1_ORYSJ (e_value=9e-136) Fructokinase-1 OS=Oryza sativa subsp. japonica GN=FRK1 PE=1 SV=2;; (*TAIR) AT5G51830.1 (e_value=9e-162) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:21069709-21071450 FORWARD LENGTH=343;; (*ITAG) Solyc10g017620.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5496344-5499545 transcript_region:SL2.40ch10:5496344..5499545+ go_terms:GO:0006014 functional_description:"5-dehydro-2-deoxygluconokinase 1 (AHRD V1 **-- IOLC1_BACCZ); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0006014 NbS00023820g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|75; (*GB) gi|19380|emb|CAA43168.1| (e_value=5e-36) TDR3 [Solanum lycopersicum];; (*SWP) sp|Q38838|AGL14_ARATH (e_value=1e-35) Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2;; (*TAIR) AT4G11880.1 (e_value=1e-36) | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143512-7147108 FORWARD LENGTH=221;; (*ITAG) Solyc10g017640.1.1 (e_value=9e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5505761-5505946 transcript_region:SL2.40ch10:5505761..5505946- go_terms:GO:0005634 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00027087g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|1|1|5|0|521; (*GB) gi|197690586|emb|CAQ58420.1| (e_value=0.0) sucrose transporter [Nicotiana tabacum];; (*SWP) sp|Q03411|SUT_SPIOL (e_value=0.0) Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT1G22710.1 (e_value=0.0) | Symbols: SUC2, SUT1, ATSUC2 | sucrose-proton symporter 2 | chr1:8030911-8032970 REVERSE LENGTH=512;; (*ITAG) Solyc11g017010.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7760827-7764617 transcript_region:SL2.40ch11:7760827..7764617+ go_terms:GO:0005887,GO:0016021 functional_description:"Sucrose transporter (AHRD V1 ***- A8E0N3_TOBAC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0005887,GO:0016021 NbS00014278g0010.1 protein AED:0.06 eAED:0.21 QI:0|0|0|1|0|0.5|2|0|80; (*GB) gi|1536937|emb|CAA61300.1| (e_value=1e-12) NTM19 [Nicotiana tabacum]; NbS00014278g0009.1 protein AED:0.16 eAED:0.16 QI:234|0.76|0.88|0.88|0.64|0.83|18|439|402; (*GB) gi|225431029|ref|XP_002279875.1| (e_value=0.0) PREDICTED: protein pelota [Vitis vinifera];; (*SWP) sp|Q58DV0|PELO_BOVIN (e_value=2e-131) Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2;; (*TAIR) AT4G27650.1 (e_value=0.0) | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1) family protein | chr4:13803459-13807556 REVERSE LENGTH=378;; (*ITAG) Solyc04g009810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3117554-3125731 transcript_region:SL2.40ch04:3117554..3125731- go_terms:GO:0005515 functional_description:"Pelota homolog (AHRD V1 ***- C3KIY5_ANOFI); contains Interpro domain(s) IPR004405 Probable translation factor pelota "; GO:0005515 NbS00031960g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|153; (*ITAG) Solyc05g044470.1.1 (e_value=2e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:55706701-55707216 transcript_region:SL2.40ch05:55706701..55707216- go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00031960g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|147841887|emb|CAN65217.1| (e_value=2e-103) hypothetical protein VITISV_024689 [Vitis vinifera];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=5e-49) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=1e-80) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051930.1.1 (e_value=5e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57797942-57799054 transcript_region:SL2.40ch07:57797942..57799054+ go_terms:GO:0004691 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00031960g0004.1 protein AED:0.39 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|224131610|ref|XP_002321133.1| (e_value=5e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05100.1 (e_value=7e-30) | Symbols: MAPKKK18 | mitogen-activated protein kinase kinase kinase 18 | chr1:1469679-1470698 FORWARD LENGTH=339;; (*ITAG) Solyc07g051920.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57792333-57793301 transcript_region:SL2.40ch07:57792333..57793301+ go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00021646g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.71|1|0.83|0.71|7|0|494; (*GB) gi|297306778|dbj|BAJ08391.1| (e_value=0.0) fucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LJK1|FUT11_ARATH (e_value=0.0) Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1;; (*TAIR) AT3G19280.1 (e_value=0.0) | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltransferase 11 | chr3:6681409-6683801 REVERSE LENGTH=501;; (*ITAG) Solyc01g108110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00021646g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|255555481|ref|XP_002518777.1| (e_value=4e-34) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g108170.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:87304636-87305554 transcript_region:SL2.40ch01:87304636..87305554- functional_description:"Unknown Protein (AHRD V1)"; NbS00021646g0008.1 protein AED:0.11 eAED:0.11 QI:35|1|1|1|0|0|3|483|170; (*GB) gi|359475374|ref|XP_003631671.1| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100854865 [Vitis vinifera];; (*SWP) sp|Q93YN0|SCO2_ARATH (e_value=7e-61) Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2 PE=1 SV=1;; (*TAIR) AT3G19220.1 (e_value=6e-62) | Symbols: CYO1, SCO2 | protein disulfide isomerases | chr3:6659207-6660488 FORWARD LENGTH=187;; (*ITAG) Solyc01g108200.2.1 (e_value=1e-68) genomic_reference:SL2.40ch01 gene_region:87316198-87320141 transcript_region:SL2.40ch01:87316198..87320141- functional_description:"cDNA clone J013057C16 full insert sequence (AHRD V1 *-*- B7F5R8_ORYSJ)"; NbS00008191g0006.1 protein AED:0.01 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|142; (*ITAG) Solyc07g064210.2.1 (e_value=7e-41) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00040543g0011.1 protein AED:0.12 eAED:0.12 QI:662|1|1|1|0.33|0.25|4|372|73; (*ITAG) Solyc02g085930.2.1 (e_value=7e-19) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00040543g0010.1 protein AED:0.25 eAED:0.26 QI:0|0.25|0.4|1|1|1|5|0|608; (*GB) gi|13925884|gb|AAK49455.1|AF304375_1 (e_value=0.0) cellulose synthase D-like protein [Nicotiana alata];; (*SWP) sp|Q9SZL9|CSLD4_ARATH (e_value=0.0) Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1;; (*TAIR) AT4G38190.1 (e_value=0.0) | Symbols: ATCSLD4, CSLD4 | cellulose synthase like D4 | chr4:17910096-17913641 REVERSE LENGTH=1111;; (*ITAG) Solyc10g074620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57489208-57495102 transcript_region:SL2.40ch10:57489208..57495102+ go_terms:GO:0016020 functional_description:"Cellulose synthase D-like protein (AHRD V1 ***- Q93XQ0_NICAL); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00040543g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|0.5|0.33|3|0|544; (*GB) gi|13925884|gb|AAK49455.1|AF304375_1 (e_value=0.0) cellulose synthase D-like protein [Nicotiana alata];; (*SWP) sp|Q9SZL9|CSLD4_ARATH (e_value=0.0) Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1;; (*TAIR) AT4G38190.1 (e_value=0.0) | Symbols: ATCSLD4, CSLD4 | cellulose synthase like D4 | chr4:17910096-17913641 REVERSE LENGTH=1111;; (*ITAG) Solyc10g074620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57489208-57495102 transcript_region:SL2.40ch10:57489208..57495102+ go_terms:GO:0016020 functional_description:"Cellulose synthase D-like protein (AHRD V1 ***- Q93XQ0_NICAL); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00013877g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-50) IS10 transposase, putative [Solanum lycopersicum];; (*TAIR) AT5G14890.1 (e_value=5e-28) | Symbols: | NHL domain-containing protein | chr5:4818056-4821534 FORWARD LENGTH=754;; (*ITAG) Solyc03g114130.1.1 (e_value=6e-80) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:58203101-58203526 transcript_region:SL2.40ch03:58203101..58203526+ functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"; NbS00013877g0007.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|193527444|gb|ACF19787.1| (e_value=4e-125) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-11) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=8e-13) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g114260.1.1 (e_value=3e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00013877g0019.1 protein AED:0.05 eAED:0.05 QI:152|1|1|1|0|0|3|202|182; (*GB) gi|225457085|ref|XP_002280078.1| (e_value=7e-67) PREDICTED: ribonuclease 3 [Vitis vinifera];; (*TAIR) AT1G24450.1 (e_value=1e-57) | Symbols: NFD2 | Ribonuclease III family protein | chr1:8664201-8665077 FORWARD LENGTH=191;; (*ITAG) Solyc03g114120.2.1 (e_value=5e-107) genomic_reference:SL2.40ch03 gene_region:58199564-58200593 transcript_region:SL2.40ch03:58199564..58200593+ go_terms:GO:0006396 functional_description:"Ribonuclease III (AHRD V1 ***- D9Y3M1_9BURK); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00013877g0020.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.4|1|0.75|0.6|5|0|1056; (*GB) gi|51989474|gb|AAU21243.1| (e_value=0.0) putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana];; (*SWP) sp|O82504|RDR2_ARATH (e_value=0.0) RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=2 SV=1;; (*TAIR) AT4G11130.1 (e_value=0.0) | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 | chr4:6780522-6784390 FORWARD LENGTH=1133;; (*ITAG) Solyc03g114140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58204901-58210600 transcript_region:SL2.40ch03:58204901..58210600- go_terms:GO:0003676 functional_description:"Rna-dependent RNA polymerase (AHRD V1 ***- B9IEP4_POPTR); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbS00058104g0003.1 protein AED:0.31 eAED:0.31 QI:443|1|0.8|1|0.75|0.6|5|252|395; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5PNS9|P2C64_ARATH (e_value=0.0) Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00022551g0001.1 protein AED:0.14 eAED:0.19 QI:2129|0.75|0.84|1|0.66|0.61|13|367|421; (*GB) gi|255549046|ref|XP_002515579.1| (e_value=3e-103) 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9T0K7|HIBC6_ARATH (e_value=8e-96) 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2;; (*TAIR) AT4G13360.1 (e_value=6e-97) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:7775133-7777701 FORWARD LENGTH=421;; (*ITAG) Solyc05g018410.1.1 (e_value=4e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20741151-20746674 transcript_region:SL2.40ch05:20741151..20746674- go_terms:GO:0003860 functional_description:"Enoyl-CoA hydratase (AHRD V1 **** A3WX21_9BRAD)"; GO:0003860 NbS00004065g0005.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0.33|1|0|0.33|3|0|460; (*GB) gi|359476719|ref|XP_002271958.2| (e_value=2e-103) PREDICTED: uncharacterized protein LOC100263342 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=4e-101) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT3G50700.1 (e_value=4e-105) | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840945-18842829 FORWARD LENGTH=452;; (*ITAG) Solyc08g063040.2.1 (e_value=3e-140) genomic_reference:SL2.40ch08 gene_region:49787174-49790203 transcript_region:SL2.40ch08:49787174..49790203+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00049715g0005.1 protein AED:0.18 eAED:0.18 QI:3|1|0.85|1|0.83|0.85|7|325|502; (*GB) gi|255561873|ref|XP_002521945.1| (e_value=1e-176) Poly(rC)-binding protein, putative [Ricinus communis];; (*SWP) sp|O19048|PCBP1_RABIT (e_value=2e-17) Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2 SV=1;; (*TAIR) AT3G04610.1 (e_value=5e-156) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc01g097010.2.1 (e_value=1e-163) genomic_reference:SL2.40ch01 gene_region:79734182-79760765 transcript_region:SL2.40ch01:79734182..79760765+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00049715g0007.1 protein AED:0.39 eAED:0.59 QI:122|0|0.33|1|0.5|0.66|3|0|68; (*ITAG) Solyc01g097020.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:79761366-79764565 transcript_region:SL2.40ch01:79761366..79764565- functional_description:"Unknown Protein (AHRD V1)"; NbS00005028g0005.1 protein AED:0.11 eAED:0.11 QI:202|1|1|1|0.91|0.92|13|71|502; (*GB) gi|225432520|ref|XP_002280174.1| (e_value=0.0) PREDICTED: DUF21 domain-containing protein At4g14240 [Vitis vinifera];; (*SWP) sp|Q67XQ0|Y4424_ARATH (e_value=0.0) DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1;; (*TAIR) AT4G14240.1 (e_value=0.0) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr4:8204712-8207273 REVERSE LENGTH=494;; (*ITAG) Solyc01g080160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71859758-71868013 transcript_region:SL2.40ch01:71859758..71868013+ functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00036709g0009.1 protein AED:0.11 eAED:0.17 QI:0|0.57|0.37|1|0|0.12|8|0|456; (*GB) gi|147786913|emb|CAN68895.1| (e_value=5e-139) hypothetical protein VITISV_026039 [Vitis vinifera];; (*SWP) sp|Q6IV77|TAZ_MACMU (e_value=1e-26) Tafazzin OS=Macaca mulatta GN=TAZ PE=2 SV=1;; (*TAIR) AT3G05510.1 (e_value=7e-104) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr3:1595576-1598074 FORWARD LENGTH=448;; (*ITAG) Solyc01g099710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81633557-81636870 transcript_region:SL2.40ch01:81633557..81636870+ go_terms:GO:0008152 functional_description:"Tafazzin (AHRD V1 *-*- Q6PUS0_DANRE); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0008152 NbS00036709g0010.1 protein AED:0.26 eAED:0.26 QI:77|1|1|1|0.77|0.9|10|736|310; (*GB) gi|296089696|emb|CBI39515.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82631|CAPZA_ARATH (e_value=1e-164) F-actin-capping protein subunit alpha OS=Arabidopsis thaliana GN=At3g05520 PE=2 SV=2;; (*TAIR) AT3G05520.2 (e_value=8e-165) | Symbols: | Subunits of heterodimeric actin filament capping protein Capz superfamily | chr3:1598611-1601437 FORWARD LENGTH=382;; (*ITAG) Solyc01g099720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81637724-81646326 transcript_region:SL2.40ch01:81637724..81646326+ go_terms:GO:0003779 functional_description:"Alpha subunit of F-actin capping protein (AHRD V1 **** D7L3V5_ARALY); contains Interpro domain(s) IPR018315 F-actin capping protein, alpha subunit, actin binding "; GO:0003779 NbS00036709g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|67; (*ITAG) Solyc09g015810.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11026684-11029498 transcript_region:SL2.40ch09:11026684..11029498+ functional_description:"PIF-like transposase (AHRD V1 *--- Q1WIR8_DAUCA)"; NbS00021086g0006.1 protein AED:0.13 eAED:0.13 QI:176|0.95|0.96|1|0.83|0.88|25|6|927; (*GB) gi|225450013|ref|XP_002272410.1| (e_value=0.0) PREDICTED: structural maintenance of chromosomes protein 5 [Vitis vinifera];; (*SWP) sp|Q8CG46|SMC5_MOUSE (e_value=8e-97) Structural maintenance of chromosomes protein 5 OS=Mus musculus GN=Smc5 PE=2 SV=1;; (*TAIR) AT5G15920.1 (e_value=0.0) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053;; (*ITAG) Solyc01g087720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74386246-74416833 transcript_region:SL2.40ch01:74386246..74416833+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes family protein (AHRD V1 ***- D7M7H7_ARALY); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00008352g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|475; (*GB) gi|167859969|emb|CAP58707.1| (e_value=0.0) putative polyol transported protein 2 [Hevea brasiliensis];; (*SWP) sp|Q8VZ80|PLT5_ARATH (e_value=0.0) Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2;; (*TAIR) AT3G18830.1 (e_value=0.0) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539;; (*ITAG) Solyc01g109460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88167522-88170694 transcript_region:SL2.40ch01:88167522..88170694+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_RAT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00008352g0109.1 protein AED:0.16 eAED:0.17 QI:0|1|0.77|1|0.62|0.66|9|0|508 NbS00027320g0007.1 protein AED:0.22 eAED:0.29 QI:0|0|0|1|0|0|4|0|218; (*GB) gi|224099087|ref|XP_002311369.1| (e_value=4e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=1e-25) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT3G06490.1 (e_value=1e-51) | Symbols: MYB108, AtMYB108, BOS1 | myb domain protein 108 | chr3:2004298-2006358 FORWARD LENGTH=323;; (*ITAG) Solyc01g057910.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:57222003-57223704 transcript_region:SL2.40ch01:57222003..57223704+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q39550_CRAPL); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00018301g0012.1 protein AED:0.36 eAED:0.36 QI:164|0.88|0.8|0.9|0.66|0.7|10|0|394; (*GB) gi|359475471|ref|XP_002268406.2| (e_value=0.0) PREDICTED: triacylglycerol lipase 1-like [Vitis vinifera];; (*SWP) sp|Q71DJ5|LIP1_ARATH (e_value=2e-175) Triacylglycerol lipase 1 OS=Arabidopsis thaliana GN=LIP1 PE=1 SV=1;; (*TAIR) AT2G15230.1 (e_value=1e-176) | Symbols: ATLIP1, LIP1 | lipase 1 | chr2:6612666-6615204 FORWARD LENGTH=393;; (*ITAG) Solyc11g032200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:22402372-22422484 transcript_region:SL2.40ch11:22402372..22422484+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0006629 NbS00012732g0004.1 protein AED:0.12 eAED:0.20 QI:0|0|0|1|0.25|0.2|5|0|272; (*GB) gi|224125338|ref|XP_002319561.1| (e_value=4e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=2e-53) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=2e-54) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc12g087860.1.1 (e_value=8e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033799g0001.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|1872; (*GB) gi|255553749|ref|XP_002517915.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9ZT82|CALSC_ARATH (e_value=0.0) Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1;; (*TAIR) AT4G03550.1 (e_value=0.0) | Symbols: ATGSL05, GSL05, ATGSL5, PMR4, GSL5 | glucan synthase-like 5 | chr4:1573513-1579195 FORWARD LENGTH=1780;; (*ITAG) Solyc07g053980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59711693-59718531 transcript_region:SL2.40ch07:59711693..59718531- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00038737g0015.1 protein AED:0.14 eAED:0.14 QI:608|0.25|0.2|1|0|0|5|0|612; (*GB) gi|356560648|ref|XP_003548602.1| (e_value=6e-22) PREDICTED: ethylene-responsive transcription factor CRF4-like [Glycine max];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=1e-20) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=8e-22) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc01g008890.2.1 (e_value=3e-68) genomic_reference:SL2.40ch01 gene_region:2910164-2911724 transcript_region:SL2.40ch01:2910164..2911724- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00038737g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.4|1|1|1|5|0|311; (*GB) gi|225435985|ref|XP_002272310.1| (e_value=4e-149) PREDICTED: protein kinase 2B, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O49839|APK2A_ARATH (e_value=1e-127) Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=2 SV=1;; (*TAIR) AT1G14370.1 (e_value=9e-129) | Symbols: APK2A, PBL2 | protein kinase 2A | chr1:4915859-4917959 FORWARD LENGTH=426;; (*ITAG) Solyc01g008870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2892754-2895697 transcript_region:SL2.40ch01:2892754..2895697- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00038737g0014.1 protein AED:0.25 eAED:0.26 QI:1304|0.91|0.84|1|0.91|0.84|13|413|374; (*GB) gi|255583653|ref|XP_002532581.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q2V452|CIPK3_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2;; (*TAIR) AT2G26980.3 (e_value=0.0) | Symbols: CIPK3 | CBL-interacting protein kinase 3 | chr2:11515234-11518205 REVERSE LENGTH=441;; (*ITAG) Solyc01g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2877780-2883889 transcript_region:SL2.40ch01:2877780..2883889+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 18 (AHRD V1 ***- C4P7W7_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00034918g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.64|0.73|1|0.64|0.6|15|804|829; (*GB) gi|225440376|ref|XP_002266667.1| (e_value=0.0) PREDICTED: uncharacterized ribonuclease sll1290-like [Vitis vinifera];; (*SWP) sp|P73177|RN2H_SYNY3 (e_value=2e-91) Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1;; (*TAIR) AT5G02250.1 (e_value=0.0) | Symbols: EMB2730, RNR1, ATMTRNASEII | Ribonuclease II/R family protein | chr5:454902-459063 FORWARD LENGTH=803;; (*ITAG) Solyc09g010870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4200163-4209478 transcript_region:SL2.40ch09:4200163..4209478- go_terms:GO:0000175 functional_description:"Exoribonuclease R/ribonuclease II (AHRD V1 **-* A5GLA4_SYNPW); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00001373g0015.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|0|578; (*GB) gi|60101707|gb|AAX13972.1| (e_value=0.0) pectin methylesterase [Nicotiana tabacum];; (*SWP) sp|Q3E8Z8|PME28_ARATH (e_value=0.0) Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1;; (*TAIR) AT5G27870.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:9878991-9881806 REVERSE LENGTH=732;; (*ITAG) Solyc01g066360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:66629166-66631615 transcript_region:SL2.40ch01:66629166..66631615+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q4G2Z0_TOBAC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00001373g0014.1 protein AED:0.25 eAED:0.25 QI:0|0.87|0.64|1|0.75|0.82|17|0|866; (*GB) gi|225431788|ref|XP_002271622.1| (e_value=0.0) PREDICTED: acyl-CoA dehydrogenase family member 10 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8K370|ACD10_MOUSE (e_value=0.0) Acyl-CoA dehydrogenase family member 10 OS=Mus musculus GN=Acad10 PE=2 SV=1;; (*TAIR) AT3G06810.1 (e_value=0.0) | Symbols: IBR3 | acyl-CoA dehydrogenase-related | chr3:2146534-2150654 FORWARD LENGTH=824;; (*ITAG) Solyc01g066310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:66350478-66359005 transcript_region:SL2.40ch01:66350478..66359005+ go_terms:GO:0003995 functional_description:"Acyl-CoA dehydrogenase (AHRD V1 *-** A6F634_9ALTE); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0003995 NbS00001373g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|701; (*GB) gi|60101707|gb|AAX13972.1| (e_value=0.0) pectin methylesterase [Nicotiana tabacum];; (*SWP) sp|Q43043|PME_PETIN (e_value=4e-144) Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1;; (*TAIR) AT3G05610.1 (e_value=8e-140) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669;; (*ITAG) Solyc01g066420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:66687232-66689209 transcript_region:SL2.40ch01:66687232..66689209- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q4G2Z0_TOBAC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008373g0007.1 protein AED:0.28 eAED:0.38 QI:254|0.6|0.5|0.83|1|1|6|0|181; (*GB) gi|255580872|ref|XP_002531255.1| (e_value=8e-68) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8N573|OXR1_HUMAN (e_value=3e-12) Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2;; (*TAIR) AT4G39870.2 (e_value=2e-60) | Symbols: | TLD-domain containing nucleolar protein | chr4:18502234-18504275 FORWARD LENGTH=394;; (*ITAG) Solyc04g055180.2.1 (e_value=1e-86) genomic_reference:SL2.40ch04 gene_region:52940795-52945381 transcript_region:SL2.40ch04:52940795..52945381+ functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00018854g0005.1 protein AED:0.25 eAED:0.25 QI:359|0.9|0.72|1|0.9|0.81|11|406|964; (*GB) gi|255553993|ref|XP_002518037.1| (e_value=0.0) Phosphoenolpyruvate carboxylase, putative [Ricinus communis];; (*SWP) sp|Q02909|CAPP1_SOYBN (e_value=0.0) Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1;; (*TAIR) AT1G53310.3 (e_value=0.0) | Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 | phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967;; (*ITAG) Solyc07g055060.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60510756-60518074 transcript_region:SL2.40ch07:60510756..60518074- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- O23946_GOSHI); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00007155g0013.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|392; (*GB) gi|224105097|ref|XP_002313685.1| (e_value=4e-154) predicted protein [Populus trichocarpa];; (*SWP) sp|O22265|SR43C_ARATH (e_value=7e-118) Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2;; (*TAIR) AT2G47450.1 (e_value=6e-119) | Symbols: CAO, CPSRP43 | chloroplast signal recognition particle component (CAO) | chr2:19472781-19473902 FORWARD LENGTH=373;; (*ITAG) Solyc02g087400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44430154-44431260 transcript_region:SL2.40ch02:44430154..44431260+ go_terms:GO:0042802 functional_description:"Ankyrin repeat domain containing protein (AHRD V1 *--- B2WQ30_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042802 NbS00007155g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.85|0.62|1|0.85|0.87|8|0|1227; (*GB) gi|359488881|ref|XP_003633838.1| (e_value=0.0) PREDICTED: ABC transporter B family member 15-like [Vitis vinifera];; (*SWP) sp|Q9LHD1|AB15B_ARATH (e_value=0.0) ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1;; (*TAIR) AT3G28345.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc02g087410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44432190-44438477 transcript_region:SL2.40ch02:44432190..44438477- go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00018008g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|65; (*GB) gi|51557995|gb|AAU06579.1| (e_value=4e-38) eukaryotic initiation factor iso4E [Nicotiana tabacum];; (*SWP) sp|O04663|IF4E2_ARATH (e_value=4e-20) Eukaryotic translation initiation factor 4E-2 OS=Arabidopsis thaliana GN=EIF4E2 PE=1 SV=2;; (*TAIR) AT5G35620.2 (e_value=2e-21) | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2, eIFiso4E | Eukaryotic initiation factor 4E protein | chr5:13825570-13826331 REVERSE LENGTH=167;; (*ITAG) Solyc09g090580.2.1 (e_value=3e-36) genomic_reference:SL2.40ch09 gene_region:65410646-65414029 transcript_region:SL2.40ch09:65410646..65414029- go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E-2 (AHRD V1 ***- B6UD29_MAIZE); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00015645g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|4|0|359; (*GB) gi|283766073|gb|ADB28437.1| (e_value=1e-155) acyltransferase [Capsicum annuum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=7e-43) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=1e-43) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc02g081760.1.1 (e_value=1e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40162825-40164247 transcript_region:SL2.40ch02:40162825..40164247+ go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00007720g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|32493106|gb|AAP85544.1| (e_value=2e-68) putative DIM-like protein [Glycine max];; (*SWP) sp|P83877|TXN4A_MOUSE (e_value=7e-63) Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1;; (*TAIR) AT5G08290.1 (e_value=1e-70) | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD LENGTH=142;; (*ITAG) Solyc04g009230.2.1 (e_value=2e-70) genomic_reference:SL2.40ch04 gene_region:2708580-2711693 transcript_region:SL2.40ch04:2708580..2711693- go_terms:GO:0005515 functional_description:"Mitosis protein dim1 (AHRD V1 **-- B6T4C6_MAIZE); contains Interpro domain(s) IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP "; GO:0005515 NbS00007720g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|214; (*GB) gi|224085437|ref|XP_002307575.1| (e_value=9e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g026140.1.1 (e_value=2e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:24676006-24676422 transcript_region:SL2.40ch04:24676006..24676422- functional_description:"Embryo-abundant protein (Fragment) (AHRD V1 **-- Q3I3Y8_PICGL)"; NbS00056276g0001.1 protein AED:0.20 eAED:0.23 QI:0|0.5|0.4|1|1|1|5|0|364; (*GB) gi|359482307|ref|XP_002277445.2| (e_value=2e-89) PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera];; (*SWP) sp|Q9ZQW8|U2AFA_ORYSJ (e_value=2e-80) Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=4e-81) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc10g083640.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62756425-62760116 transcript_region:SL2.40ch10:62756425..62760116- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00004609g0003.1 protein AED:0.07 eAED:0.07 QI:486|0.83|1|1|0.16|0.42|7|267|153; (*GB) gi|95103172|gb|ABF51526.1| (e_value=2e-45) MADS box transcription factor [Populus tomentosa];; (*SWP) sp|O82743|AGL19_ARATH (e_value=2e-44) Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1;; (*TAIR) AT4G22950.1 (e_value=2e-45) | Symbols: AGL19, GL19 | AGAMOUS-like 19 | chr4:12023946-12027421 REVERSE LENGTH=219;; (*ITAG) Solyc08g080100.2.1 (e_value=2e-61) genomic_reference:SL2.40ch08 gene_region:60586947-60598079 transcript_region:SL2.40ch08:60586947..60598079- go_terms:GO:0005515,GO:0003700 functional_description:"MADS box transcription factor (AHRD V1 **** C3PTE7_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00004609g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|108; (*ITAG) Solyc03g082750.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:46183274-46183810 transcript_region:SL2.40ch03:46183274..46183810- go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 *-*- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00004609g0117.1 protein AED:0.07 eAED:0.07 QI:548|0.66|1|1|1|1|4|302|256 NbS00004609g0112.1 protein AED:0.15 eAED:0.15 QI:311|1|1|1|0.63|0.75|12|4|690 NbS00004609g0114.1 protein AED:0.22 eAED:0.22 QI:0|0.55|0.6|0.8|0.77|0.9|10|0|852 NbS00004609g0115.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|298 NbS00004609g0105.1 protein AED:0.46 eAED:0.50 QI:0|-1|0|1|-1|1|1|0|106 NbS00052740g0003.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0|3|0|264; (*GB) gi|225435530|ref|XP_002283018.1| (e_value=2e-35) PREDICTED: UDP-glycosyltransferase 92A1 [Vitis vinifera];; (*ITAG) Solyc11g061980.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45792676-45794377 transcript_region:SL2.40ch11:45792676..45794377- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00037309g0003.1 protein AED:0.30 eAED:0.47 QI:0|0.5|0.14|0.85|1|1|7|0|333; (*GB) gi|297745033|emb|CBI38625.3| (e_value=8e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8Z4|HEAT1_ARATH (e_value=7e-121) Uncharacterized protein At3g06530 OS=Arabidopsis thaliana GN=At3g06530 PE=2 SV=3;; (*TAIR) AT3G06530.3 (e_value=3e-122) | Symbols: | ARM repeat superfamily protein | chr3:2022596-2033637 FORWARD LENGTH=2188;; (*ITAG) Solyc03g093480.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48226050-48252855 transcript_region:SL2.40ch03:48226050..48252855- go_terms:GO:0005515 functional_description:"U3 small nucleolar RNA-associated protein 10 (AHRD V1 *--- C8VGG5_EMENI); contains Interpro domain(s) IPR012954 BP28, C-terminal "; GO:0005515 NbS00016188g0007.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|467; (*GB) gi|359476350|ref|XP_002283782.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|Q15034|HERC3_HUMAN (e_value=7e-17) Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1;; (*TAIR) AT5G11580.1 (e_value=5e-142) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:3718913-3721125 FORWARD LENGTH=553;; (*ITAG) Solyc08g066570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:52507401-52508681 transcript_region:SL2.40ch08:52507401..52508681+ go_terms:GO:0005087 functional_description:"Regulator of chromosome condensation RCC1 domain-containing protein (AHRD V1 **-- B9QKU8_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005087 NbS00016188g0008.1 protein AED:0.17 eAED:0.17 QI:76|1|0.94|1|0.77|0.73|19|0|718; (*GB) gi|225429930|ref|XP_002283798.1| (e_value=0.0) PREDICTED: nuclear pore complex protein Nup85 [Vitis vinifera];; (*SWP) sp|Q8RXH2|NUP85_ARATH (e_value=0.0) Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85 PE=2 SV=1;; (*TAIR) AT4G32910.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15881364-15885210 FORWARD LENGTH=716;; (*ITAG) Solyc08g066580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52512630-52530812 transcript_region:SL2.40ch08:52512630..52530812- functional_description:"Nuclear pore complex protein Nup85 (AHRD V1 **-- NUP85_MOUSE); contains Interpro domain(s) IPR011502 Nucleoporin, Nup85-like "; NbS00060967g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|1|1|6|0|593; (*GB) gi|225450232|ref|XP_002266606.1| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-50) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G44500.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:18374447-18376435 FORWARD LENGTH=573;; (*ITAG) Solyc01g086640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73378678-73382504 transcript_region:SL2.40ch01:73378678..73382504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00060967g0006.1 protein AED:0.08 eAED:0.08 QI:449|1|1|1|1|1|5|772|376; (*GB) gi|359487374|ref|XP_003633580.1| (e_value=0.0) PREDICTED: siroheme synthase-like [Vitis vinifera];; (*SWP) sp|Q6F8G6|CYSG_ACIAD (e_value=7e-74) Siroheme synthase OS=Acinetobacter sp. (strain ADP1) GN=cysG PE=3 SV=1;; (*TAIR) AT5G40850.1 (e_value=0.0) | Symbols: UPM1 | urophorphyrin methylase 1 | chr5:16367205-16368724 FORWARD LENGTH=369;; (*ITAG) Solyc01g086650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73383501-73387568 transcript_region:SL2.40ch01:73383501..73387568- go_terms:GO:0008152,GO:0006779,GO:0055114 functional_description:"Siroheme synthase (AHRD V1 ***- A3LD64_PSEAE); contains Interpro domain(s) IPR006366 Uroporphyrin-III C-methyltransferase, C-terminal "; GO:0008152,GO:0006779,GO:0055114 NbS00057161g0004.1 protein AED:0.05 eAED:0.05 QI:307|0.66|0.5|1|0.33|0.25|4|608|639; (*GB) gi|45935134|gb|AAS79592.1| (e_value=0.0) putative non-phototropic hypocotyl 3-like protein [Ipomoea trifida];; (*SWP) sp|Q9FYC8|Y3482_ARATH (e_value=0.0) BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana GN=At3g44820 PE=2 SV=2;; (*TAIR) AT3G44820.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:16361864-16364411 REVERSE LENGTH=651;; (*ITAG) Solyc11g066730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49612094-49617915 transcript_region:SL2.40ch11:49612094..49617915+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00014991g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|100; (*GB) gi|359807123|ref|NP_001241349.1| (e_value=4e-46) uncharacterized protein LOC100785611 [Glycine max];; (*SWP) sp|Q9ZQG8|FER3_ARATH (e_value=4e-37) Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1;; (*TAIR) AT2G27510.1 (e_value=3e-38) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g006910.1.1 (e_value=3e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1431026-1431403 transcript_region:SL2.40ch11:1431026..1431403- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00014991g0008.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|141; (*GB) gi|225450250|ref|XP_002268769.1| (e_value=1e-43) PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Vitis vinifera];; (*ITAG) Solyc11g006930.1.1 (e_value=6e-62) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1441581-1445054 transcript_region:SL2.40ch11:1441581..1445054+ go_terms:GO:0009059 functional_description:"4&apos-phosphopantetheinyl transferase (AHRD V1 ***- B8EMK9_METSB); contains Interpro domain(s) IPR008278 4'-phosphopantetheinyl transferase "; GO:0009059 NbS00014991g0007.1 protein AED:0.30 eAED:0.30 QI:160|1|1|1|1|1|3|244|123; (*GB) gi|209484093|gb|ACI47521.1| (e_value=2e-71) iron-sulfer cluster scaffold protein ISA1, partial [Eucalyptus grandis];; (*SWP) sp|Q8LBM4|ISAM1_ARATH (e_value=3e-69) Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2;; (*TAIR) AT2G16710.1 (e_value=2e-70) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137;; (*ITAG) Solyc11g006920.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1435246-1438449 transcript_region:SL2.40ch11:1435246..1438449+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein erpA (AHRD V1 ***- ERPA_ALHEH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; GO:0016226 NbC25993797g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|201; (*GB) gi|375968535|gb|AFB17976.1| (e_value=3e-51) Rx-like protein, partial [Solanum acaule];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=1e-47) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=4e-32) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g012740.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5910570-5914278 transcript_region:SL2.40ch05:5910570..5914278- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00012414g0027.1 protein AED:0.01 eAED:0.04 QI:0|0.5|0.33|1|1|1|3|0|330; (*GB) gi|255541746|ref|XP_002511937.1| (e_value=2e-86) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G46220.1 (e_value=2e-79) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr2:18979655-18980557 FORWARD LENGTH=241;; (*ITAG) Solyc01g095270.2.1 (e_value=1e-155) genomic_reference:SL2.40ch01 gene_region:78352723-78355979 transcript_region:SL2.40ch01:78352723..78355979+ functional_description:"SOUL heme-binding protein-like (AHRD V1 *-*- D7G9H5_ECTSI); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00012414g0018.1 protein AED:0.23 eAED:0.23 QI:0|0.57|0.87|0.87|1|1|8|292|206; (*GB) gi|224130438|ref|XP_002320837.1| (e_value=7e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RFQ0|FCF1_PONAB (e_value=7e-67) rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1;; (*TAIR) AT2G46230.1 (e_value=2e-89) | Symbols: | PIN domain-like family protein | chr2:18984459-18985850 REVERSE LENGTH=196;; (*ITAG) Solyc03g121130.2.1 (e_value=6e-105) genomic_reference:SL2.40ch03 gene_region:63397250-63400822 transcript_region:SL2.40ch03:63397250..63400822+ go_terms:GO:0016563 functional_description:"rRNA-processing protein FCF1 homolog (AHRD V1 ***- B5X7B1_SALSA); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; GO:0016563 NbS00012414g0029.1 protein AED:0.03 eAED:0.03 QI:451|0.88|0.6|1|0.88|0.9|10|0|784; (*GB) gi|359489827|ref|XP_002276292.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262009 [Vitis vinifera];; (*TAIR) AT4G01210.1 (e_value=0.0) | Symbols: | glycosyl transferase family 1 protein | chr4:507738-512362 REVERSE LENGTH=1031;; (*ITAG) Solyc01g095300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78377389-78387204 transcript_region:SL2.40ch01:78377389..78387204+ go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** D2LJY9_RHOVA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00012414g0023.1 protein AED:0.10 eAED:0.10 QI:291|1|1|1|1|1|4|408|362; (*GB) gi|255541750|ref|XP_002511939.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54RP0|AGTA_DICDI (e_value=3e-13) UDP-galactose:fucoside alpha-3-galactosyltransferase OS=Dictyostelium discoideum GN=agtA PE=1 SV=1;; (*TAIR) AT4G01220.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr4:513431-515648 REVERSE LENGTH=360;; (*ITAG) Solyc01g095290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78363145-78367864 transcript_region:SL2.40ch01:78363145..78367864+ go_terms:GO:0035252 functional_description:"1 3-alpha-D-xylosyltransferase (AHRD V1 **-* Q9ZSJ2_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0035252 NbS00012414g0031.1 protein AED:0.13 eAED:0.13 QI:351|1|0.88|1|0.75|0.88|9|341|305; (*GB) gi|255541748|ref|XP_002511938.1| (e_value=1e-149) Protein ABIL1, putative [Ricinus communis];; (*SWP) sp|Q8S8M5|ABIL1_ARATH (e_value=2e-121) Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=1 SV=1;; (*TAIR) AT2G46225.1 (e_value=1e-122) | Symbols: ABIL1 | ABI-1-like 1 | chr2:18982113-18984074 FORWARD LENGTH=298;; (*ITAG) Solyc01g095280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78357902-78362529 transcript_region:SL2.40ch01:78357902..78362529+ go_terms:GO:0005515 functional_description:"Protein ABIL1 (AHRD V1 **-- B6TCZ2_MAIZE)"; GO:0005515 NbS00012414g0002.1 protein AED:0.41 eAED:0.75 QI:0|0.66|0|1|1|1|4|0|286; (*GB) gi|359489827|ref|XP_002276292.2| (e_value=6e-144) PREDICTED: uncharacterized protein LOC100262009 [Vitis vinifera];; (*TAIR) AT4G01210.1 (e_value=6e-127) | Symbols: | glycosyl transferase family 1 protein | chr4:507738-512362 REVERSE LENGTH=1031;; (*ITAG) Solyc01g095300.2.1 (e_value=1e-167) genomic_reference:SL2.40ch01 gene_region:78377389-78387204 transcript_region:SL2.40ch01:78377389..78387204+ go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** D2LJY9_RHOVA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00012414g0026.1 protein AED:0.16 eAED:0.35 QI:0|0|0|1|0|0|3|0|135; (*GB) gi|290489532|gb|ADD31150.1| (e_value=1e-22) RNA polymerase beta'' subunit protein [Aucuba japonica];; (*SWP) sp|Q33C48|RPOC2_NICTO (e_value=2e-22) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tomentosiformis GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=4e-23) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc01g017350.1.1 (e_value=4e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23939347-23939876 transcript_region:SL2.40ch01:23939347..23939876- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW65_CORFO)"; NbS00007089g0009.1 protein AED:0.02 eAED:0.02 QI:169|1|0.66|1|1|0.66|3|0|167; (*GB) gi|296086711|emb|CBI32346.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23590.1 (e_value=1e-49) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc09g064780.2.1 (e_value=7e-85) genomic_reference:SL2.40ch09 gene_region:57766534-57778114 transcript_region:SL2.40ch09:57766534..57778114+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00007089g0008.1 protein AED:0.21 eAED:0.21 QI:80|1|0|1|1|0.5|2|187|15 NbS00007089g0004.1 protein AED:0.36 eAED:0.69 QI:0|0|0|1|1|0.5|2|0|66; (*GB) gi|296086711|emb|CBI32346.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G23590.1 (e_value=2e-27) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc09g064780.2.1 (e_value=7e-36) genomic_reference:SL2.40ch09 gene_region:57766534-57778114 transcript_region:SL2.40ch09:57766534..57778114+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00025385g0006.1 protein AED:0.01 eAED:0.01 QI:67|1|1|1|1|1|2|160|397; (*GB) gi|148611499|gb|ABQ95989.1| (e_value=0.0) phospholipase A1 [Capsicum annuum];; (*SWP) sp|O49523|DSEL_ARATH (e_value=9e-155) Phospholipase A1-IIgamma OS=Arabidopsis thaliana GN=DSEL PE=1 SV=1;; (*TAIR) AT4G18550.1 (e_value=7e-156) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36656468-36657997 transcript_region:SL2.40ch02:36656468..36657997+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00025385g0005.1 protein AED:0.02 eAED:0.02 QI:149|1|1|1|1|1|2|163|348; (*GB) gi|350535639|ref|NP_001233949.1| (e_value=7e-172) phytophthora-inhibited protease 1 [Solanum lycopersicum];; (*SWP) sp|P43156|CYSP_HEMSP (e_value=2e-97) Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1;; (*TAIR) AT2G27420.1 (e_value=3e-101) | Symbols: | Cysteine proteinases superfamily protein | chr2:11726311-11727519 REVERSE LENGTH=348;; (*ITAG) Solyc02g077040.2.1 (e_value=1e-174) genomic_reference:SL2.40ch02 gene_region:36690627-36692270 transcript_region:SL2.40ch02:36690627..36692270+ go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase 5 (AHRD V1 **-* CPR5_CAEEL); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0030984,GO:0004197 NbS00028825g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.75|0.2|1|0.75|0.6|5|0|513; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=0.0) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=0.0) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=0.0) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00028825g0007.1 protein AED:0.11 eAED:0.11 QI:220|1|1|1|0.88|0.9|10|351|432; (*GB) gi|21535793|emb|CAC85725.1| (e_value=0.0) putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum];; (*SWP) sp|Q8YXQ7|CARA_NOSS1 (e_value=8e-134) Carbamoyl-phosphate synthase small chain OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=carA PE=3 SV=1;; (*TAIR) AT3G27740.1 (e_value=0.0) | Symbols: CARA | carbamoyl phosphate synthetase A | chr3:10281470-10283792 REVERSE LENGTH=430;; (*ITAG) Solyc03g115630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59330578-59335551 transcript_region:SL2.40ch03:59330578..59335551+ go_terms:GO:0005515,GO:0016301 functional_description:"Carbamoyl-phosphate synthase small chain (AHRD V1 ***- B6TJA4_MAIZE); contains Interpro domain(s) IPR006274 Carbamoyl phosphate synthase, small subunit "; GO:0005515,GO:0016301 NbS00013768g0004.1 protein AED:0.18 eAED:0.25 QI:0|1|0.8|1|1|1|5|0|216; (*GB) gi|359483478|ref|XP_002269427.2| (e_value=8e-100) PREDICTED: uncharacterized oxidoreductase C663.09c-like [Vitis vinifera];; (*TAIR) AT4G20760.1 (e_value=8e-91) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:11129043-11130541 FORWARD LENGTH=298;; (*ITAG) Solyc02g023990.2.1 (e_value=2e-117) genomic_reference:SL2.40ch02 gene_region:15395931-15402452 transcript_region:SL2.40ch02:15395931..15402452+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **-- A1WVI4_HALHL); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00034088g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|78; (*GB) gi|93004717|gb|ABD93550.2| (e_value=2e-45) inward rectifier potassium channel-like protein [Nicotiana tomentosiformis];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=1e-23) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=8e-25) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=9e-39) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00057957g0003.1 protein AED:0.54 eAED:0.59 QI:0|0|0|0.33|0.5|0.66|3|0|137 NbS00057957g0004.1 protein AED:0.40 eAED:0.43 QI:0|0|0|0.5|0|0|2|0|168; (*ITAG) Solyc09g072960.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61130227-61131414 transcript_region:SL2.40ch09:61130227..61131414- functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00011972g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|161; (*ITAG) Solyc01g006790.2.1 (e_value=2e-53) genomic_reference:SL2.40ch01 gene_region:1360587-1361317 transcript_region:SL2.40ch01:1360587..1361317+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011972g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|0.6|1|1|5|0|281; (*GB) gi|218184498|gb|EEC66925.1| (e_value=4e-66) hypothetical protein OsI_33530 [Oryza sativa Indica Group];; (*TAIR) AT4G39810.1 (e_value=3e-39) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr4:18474608-18475735 REVERSE LENGTH=255;; (*ITAG) Solyc12g036220.1.1 (e_value=9e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:29868498-29873746 transcript_region:SL2.40ch12:29868498..29873746+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00011972g0104.1 protein AED:0.26 eAED:0.26 QI:210|1|1|1|0.76|0.57|14|347|440 NbS00011972g0201.1 protein AED:0.05 eAED:0.05 QI:265|0|0.5|1|0|0.5|2|171|406 NbS00011972g0311.1 protein AED:0.14 eAED:0.14 QI:0|1|0.85|1|0.83|0.85|7|174|633 NbS00011972g0310.1 protein AED:0.15 eAED:0.15 QI:240|1|1|1|0.85|0.75|8|208|444 NbS00011972g0309.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|90 NbS00044503g0007.1 protein AED:0.19 eAED:0.19 QI:38|1|0.5|1|0|0|2|0|100; (*GB) gi|255576589|ref|XP_002529185.1| (e_value=2e-58) snare protein sec22, putative [Ricinus communis];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=4e-58) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=3e-59) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=7e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00044503g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|272; (*GB) gi|6635236|dbj|BAA88636.1| (e_value=2e-122) elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=3e-40) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05660.1 (e_value=4e-54) | Symbols: AtRLP33, RLP33 | receptor like protein 33 | chr3:1649258-1652001 REVERSE LENGTH=875;; (*ITAG) Solyc12g100010.1.1 (e_value=3e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65259171-65263375 transcript_region:SL2.40ch12:65259171..65263375+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00044503g0011.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|57014003|ref|YP_173474.1| (e_value=4e-63) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=1e-37) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc04g081440.2.1 (e_value=2e-37) genomic_reference:SL2.40ch04 gene_region:63008173-63012837 transcript_region:SL2.40ch04:63008173..63012837- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00044503g0009.1 protein AED:0.39 eAED:0.53 QI:0|0|0|1|0|0|2|0|135; (*GB) gi|30013677|gb|AAP03881.1| (e_value=8e-29) Avr9/Cf-9 rapidly elicited protein 275 [Nicotiana tabacum];; (*TAIR) AT1G45616.1 (e_value=4e-14) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc12g100010.1.1 (e_value=9e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65259171-65263375 transcript_region:SL2.40ch12:65259171..65263375+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00058147g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=4e-43) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*ITAG) Solyc11g064770.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46991577-46994693 transcript_region:SL2.40ch11:46991577..46994693- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00009243g0015.1 protein AED:0.14 eAED:0.20 QI:0|0|0|1|0.5|0.66|3|0|177; (*GB) gi|358635024|dbj|BAL22345.1| (e_value=2e-48) oxidoreductase [Ipomoea batatas];; (*TAIR) AT3G13610.1 (e_value=5e-37) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc01g044550.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:39693876-39694433 transcript_region:SL2.40ch01:39693876..39694433+ functional_description:"Anthocyanidin synthase (AHRD V1 **-- O22583_MATIN)"; NbS00009243g0002.1 protein AED:0.23 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|264; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-22) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=6e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009243g0004.1 protein AED:0.27 eAED:0.32 QI:0|0.11|0.2|0.9|1|1|10|0|547; (*GB) gi|225435708|ref|XP_002283489.1| (e_value=9e-175) PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera];; (*SWP) sp|Q75HJ0|RH37_ORYSJ (e_value=7e-152) DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1;; (*TAIR) AT2G42520.1 (e_value=4e-148) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633;; (*ITAG) Solyc01g005960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00009243g0013.1 protein AED:0.38 eAED:0.38 QI:296|0|0|0.66|0.5|0.66|3|0|87; (*GB) gi|255543927|ref|XP_002513026.1| (e_value=6e-29) NADH dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9LHI0|NDUA6_ARATH (e_value=1e-26) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1;; (*TAIR) AT3G12260.1 (e_value=1e-27) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr3:3909252-3910337 REVERSE LENGTH=133;; (*ITAG) Solyc01g022750.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:32937521-32944195 transcript_region:SL2.40ch01:32937521..32944195- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** B5G1U3_TAEGU); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0008137 NbS00009243g0018.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|67 NbS00009243g0019.1 protein AED:0.11 eAED:0.68 QI:0|0|0|1|0|0|2|0|97 NbS00036916g0011.1 protein AED:0.25 eAED:0.27 QI:0|0.71|0.6|0.93|0.85|0.86|15|0|506; (*GB) gi|380042380|gb|AFD33354.1| (e_value=0.0) acyl-activating enzyme 10 [Cannabis sativa];; (*SWP) sp|Q8H151|AAE13_ARATH (e_value=0.0) Malonate--CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1;; (*TAIR) AT3G16170.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:5476490-5480128 FORWARD LENGTH=544;; (*ITAG) Solyc12g044300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44635849-44639534 transcript_region:SL2.40ch12:44635849..44639534+ go_terms:GO:0016878 functional_description:"Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II (AHRD V1 **** C7MWS2_SACVD); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016878 NbS00036916g0010.1 protein AED:0.04 eAED:0.04 QI:109|0.66|0.5|1|0.66|0.5|4|0|586; (*GB) gi|225442569|ref|XP_002279092.1| (e_value=0.0) PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g044310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44643352-44647348 transcript_region:SL2.40ch12:44643352..44647348- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00056670g0001.1 protein AED:0.66 eAED:0.67 QI:0|0.5|0.66|0.66|1|1|3|0|87; (*GB) gi|118485495|gb|ABK94602.1| (e_value=9e-37) unknown [Populus trichocarpa];; (*TAIR) AT3G52040.1 (e_value=6e-36) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19304368-19304802 REVERSE LENGTH=90;; (*ITAG) Solyc01g087880.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:74513038-74515849 transcript_region:SL2.40ch01:74513038..74515849+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015549g0009.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|70; (*ITAG) ATMG00510.1 (e_value=2e-14) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=1e-14) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00015549g0012.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0|2|29|199; (*GB) gi|356557001|ref|XP_003546807.1| (e_value=2e-73) PREDICTED: uncharacterized protein LOC100794678 [Glycine max];; (*TAIR) AT2G36000.1 (e_value=2e-65) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:15117181-15118182 FORWARD LENGTH=333;; (*ITAG) Solyc01g007750.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:1911479-1912823 transcript_region:SL2.40ch01:1911479..1912823+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00015549g0011.1 protein AED:0.22 eAED:0.26 QI:80|0.85|0.8|1|0.57|0.6|15|0|503; (*GB) gi|297740186|emb|CBI30368.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNY0|E2FA_ARATH (e_value=1e-142) Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1;; (*TAIR) AT2G36010.1 (e_value=1e-145) | Symbols: E2F3, ATE2FA | E2F transcription factor 3 | chr2:15119688-15122893 FORWARD LENGTH=483;; (*ITAG) Solyc01g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1916300-1921403 transcript_region:SL2.40ch01:1916300..1921403+ go_terms:GO:0003700,GO:0003714 functional_description:"Transcription factor E2F (AHRD V1 **** Q9LEL4_DAUCA); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003700,GO:0003714 NbS00030821g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|0.83|0.6|0.83|6|0|202; (*GB) gi|225446283|ref|XP_002269268.1| (e_value=1e-79) PREDICTED: uncharacterized methyltransferase WBSCR22 [Vitis vinifera];; (*SWP) sp|Q9CY21|WBS22_MOUSE (e_value=3e-39) Uncharacterized methyltransferase WBSCR22 OS=Mus musculus GN=Wbscr22 PE=2 SV=1;; (*TAIR) AT5G57280.1 (e_value=9e-67) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23204533-23206485 FORWARD LENGTH=289;; (*ITAG) Solyc06g072250.2.1 (e_value=5e-88) genomic_reference:SL2.40ch06 gene_region:40902229-40906959 transcript_region:SL2.40ch06:40902229..40906959+ go_terms:GO:0016435 functional_description:"Methyltransferase WBSCR22 (AHRD V1 **-* B6TAS9_MAIZE); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016435 NbS00030821g0012.1 protein AED:0.17 eAED:0.28 QI:0|0.33|0.14|0.85|0.33|0.14|7|0|609; (*GB) gi|356529414|ref|XP_003533287.1| (e_value=2e-95) PREDICTED: uncharacterized protein LOC100798960 [Glycine max];; (*TAIR) AT1G15030.1 (e_value=9e-22) | Symbols: | Protein of unknown function (DUF789) | chr1:5177895-5179853 FORWARD LENGTH=360;; (*ITAG) Solyc03g098630.2.1 (e_value=2e-150) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00030821g0011.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|158; (*ITAG) Solyc03g098630.2.1 (e_value=4e-23) genomic_reference:SL2.40ch03 gene_region:54378741-54385923 transcript_region:SL2.40ch03:54378741..54385923- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00030821g0010.1 protein AED:0.13 eAED:1.00 QI:31|0|0|1|0|0|2|239|70 NbS00000479g0119.1 protein AED:0.10 eAED:0.10 QI:206|0.90|0.95|0.95|0.81|0.78|23|603|1881 NbS00000479g0101.1 protein AED:0.12 eAED:0.12 QI:197|0.94|0.78|1|0.83|0.89|19|0|541 NbS00000479g0120.1 protein AED:0.17 eAED:0.17 QI:268|1|0.88|1|0.87|0.77|9|0|638 NbS00000479g0114.1 protein AED:0.40 eAED:0.50 QI:0|0|0|1|1|1|2|0|79 NbS00000479g0117.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|229 NbS00000479g0115.1 protein AED:0.86 eAED:0.93 QI:0|0|0|1|1|1|2|0|131 NbS00035452g0004.1 protein AED:0.36 eAED:0.58 QI:0|0|0|0.5|0.2|0.5|6|0|289; (*GB) gi|57014024|ref|YP_173495.1| (e_value=1e-21) hypothetical protein NitaMp158 [Nicotiana tabacum]; NbS00021191g0005.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0.5|2|0|299; (*GB) gi|255558372|ref|XP_002520213.1| (e_value=7e-23) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g006320.2.1 (e_value=9e-162) genomic_reference:SL2.40ch05 gene_region:967042-972249 transcript_region:SL2.40ch05:967042..972249- functional_description:"SAM domain family protein (AHRD V1 *--- B6TW56_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00021191g0003.1 protein AED:0.37 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|118 NbS00056166g0006.1 protein AED:0.20 eAED:0.20 QI:411|0.94|0.95|1|0.89|0.95|20|697|572; (*GB) gi|225444959|ref|XP_002282458.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera];; (*SWP) sp|Q9ZUN3|KEA4_ARATH (e_value=0.0) K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2;; (*TAIR) AT2G19600.1 (e_value=0.0) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc07g026670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:30206942-30221961 transcript_region:SL2.40ch07:30206942..30221961+ go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 **** Q46EP4_METBF); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00009942g0001.1 protein AED:0.20 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|225470930|ref|XP_002264990.1| (e_value=5e-26) PREDICTED: uncharacterized protein At4g00950 [Vitis vinifera];; (*TAIR) AT4G00950.1 (e_value=3e-11) | Symbols: MEE47 | Protein of unknown function (DUF688) | chr4:405984-407087 REVERSE LENGTH=291;; (*ITAG) Solyc01g096080.2.1 (e_value=4e-84) genomic_reference:SL2.40ch01 gene_region:78952509-78954988 transcript_region:SL2.40ch01:78952509..78954988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019784g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|1|1|3|0|89; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00033546g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|197; (*GB) gi|242092794|ref|XP_002436887.1| (e_value=5e-62) hypothetical protein SORBIDRAFT_10g010580 [Sorghum bicolor];; (*SWP) sp|Q6H677|EXB14_ORYSJ (e_value=1e-57) Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1;; (*TAIR) AT2G45110.1 (e_value=6e-58) | Symbols: ATEXPB4, EXPB4, ATHEXP BETA 1.1 | expansin B4 | chr2:18599575-18601237 FORWARD LENGTH=259;; (*ITAG) Solyc07g049540.1.1 (e_value=2e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57160827-57162596 transcript_region:SL2.40ch07:57160827..57162596- go_terms:GO:0005576 functional_description:"Expansin-b5 (AHRD V1 ***- D7LRS2_ARALY); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00026563g0001.1 protein AED:0.16 eAED:0.16 QI:72|0.5|0.66|1|1|1|3|213|423; (*GB) gi|55375996|gb|AAV50009.1| (e_value=6e-131) anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica];; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=2e-92) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G67150.1 (e_value=1e-104) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:26795880-26797226 REVERSE LENGTH=448;; (*ITAG) Solyc02g093180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48696065-48698021 transcript_region:SL2.40ch02:48696065..48698021- go_terms:GO:0016740 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 3 (AHRD V1 **-- Q00M87_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00058255g0001.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.66|1|1|3|0|67; (*ITAG) Solyc12g019720.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00042064g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.68|0.47|1|0.87|0.94|17|336|683; (*GB) gi|359477374|ref|XP_002284013.2| (e_value=0.0) PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8R146|APEH_MOUSE (e_value=1e-65) Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=2;; (*TAIR) AT4G14570.1 (e_value=4e-168) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc03g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:196973-204060 transcript_region:SL2.40ch03:196973..204060- go_terms:GO:0004252 functional_description:"Prolyl endopeptidase (AHRD V1 *-** C0NUP9_AJECG); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00030549g0007.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|169; (*ITAG) Solyc10g049530.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00030549g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|356498377|ref|XP_003518029.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100803756 [Glycine max];; (*TAIR) AT5G41980.1 (e_value=3e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16793765-16794889 FORWARD LENGTH=374;; (*ITAG) Solyc10g049530.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00055676g0002.1 protein AED:0.02 eAED:0.05 QI:0|1|0|1|1|1|2|0|243; (*GB) gi|224134607|ref|XP_002321864.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN95|BH055_ARATH (e_value=1e-12) Transcription factor bHLH55 OS=Arabidopsis thaliana GN=BHLH55 PE=2 SV=1;; (*TAIR) AT1G12540.1 (e_value=9e-14) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:4272960-4273980 FORWARD LENGTH=257;; (*ITAG) Solyc07g062200.1.1 (e_value=1e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:62223268-62226571 transcript_region:SL2.40ch07:62223268..62226571- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor bHLH126 (AHRD V1 *-*- BH126_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00059052g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|255538794|ref|XP_002510462.1| (e_value=6e-54) Dehydration-responsive element-binding protein 2G, putative [Ricinus communis];; (*SWP) sp|Q9LQZ2|DRE2D_ARATH (e_value=2e-46) Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1;; (*TAIR) AT1G75490.1 (e_value=2e-47) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:28336045-28336665 FORWARD LENGTH=206;; (*ITAG) Solyc04g080910.1.1 (e_value=7e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62552994-62553740 transcript_region:SL2.40ch04:62552994..62553740+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00059052g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|145; (*GB) gi|155573899|gb|ABU24346.1| (e_value=2e-30) mitochondrial alternative oxidase AOX1a [Nicotiana glutinosa];; (*SWP) sp|Q41224|AOX1_TOBAC (e_value=2e-29) Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1;; (*TAIR) AT3G22370.1 (e_value=1e-16) | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354;; (*ITAG) Solyc08g005550.2.1 (e_value=2e-45) genomic_reference:SL2.40ch08 gene_region:408345-410739 transcript_region:SL2.40ch08:408345..410739+ go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** C1I1U5_NICGU); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00059052g0010.1 protein AED:0.14 eAED:0.14 QI:185|1|1|1|1|1|2|1700|549; (*GB) gi|255557699|ref|XP_002519879.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|P37034|Y1691_LEGPH (e_value=2e-14) Uncharacterized transporter lpg1691 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=lpg1691 PE=3 SV=2;; (*TAIR) AT1G31830.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc08g005540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:397461-402431 transcript_region:SL2.40ch08:397461..402431- go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME9_9ASTR); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00023879g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|147765323|emb|CAN76049.1| (e_value=5e-15) hypothetical protein VITISV_019381 [Vitis vinifera];; (*TAIR) AT3G02340.1 (e_value=4e-14) | Symbols: | RING/U-box superfamily protein | chr3:477032-478261 FORWARD LENGTH=409;; (*ITAG) Solyc11g011570.1.1 (e_value=5e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4638052-4639160 transcript_region:SL2.40ch11:4638052..4639160- go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_DANRE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00023879g0006.1 protein AED:0.12 eAED:0.12 QI:1385|1|1|1|1|1|3|315|125; (*GB) gi|224099981|ref|XP_002311696.1| (e_value=3e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q08935|ROC1_NICSY (e_value=9e-27) 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G60000.1 (e_value=5e-62) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:22093678-22094540 REVERSE LENGTH=258;; (*ITAG) Solyc09g090960.2.1 (e_value=3e-82) genomic_reference:SL2.40ch09 gene_region:65690701-65693271 transcript_region:SL2.40ch09:65690701..65693271- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 **-* Q8SMH8_PERAE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00009361g0014.1 protein AED:0.12 eAED:0.12 QI:248|1|1|1|1|1|2|244|137; (*GB) gi|225444442|ref|XP_002271195.1| (e_value=2e-62) PREDICTED: 15.4 kDa class V heat shock protein [Vitis vinifera];; (*SWP) sp|O49710|HS154_ARATH (e_value=1e-34) 15.4 kDa class V heat shock protein OS=Arabidopsis thaliana GN=HSP15.4 PE=2 SV=1;; (*TAIR) AT4G21870.1 (e_value=1e-35) | Symbols: | HSP20-like chaperones superfamily protein | chr4:11603756-11604285 REVERSE LENGTH=134;; (*ITAG) Solyc02g080410.2.1 (e_value=1e-85) genomic_reference:SL2.40ch02 gene_region:39217663-39218499 transcript_region:SL2.40ch02:39217663..39218499- functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00009361g0018.1 protein AED:0.27 eAED:0.27 QI:0|1|0.83|1|0.8|1|6|0|245; (*GB) gi|388509296|gb|AFK42714.1| (e_value=5e-156) unknown [Lotus japonicus];; (*SWP) sp|Q9ZS88|DER22_ARATH (e_value=1e-151) Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1;; (*TAIR) AT4G04860.1 (e_value=1e-152) | Symbols: DER2.2 | DERLIN-2.2 | chr4:2460135-2461378 FORWARD LENGTH=244;; (*ITAG) Solyc02g080380.2.1 (e_value=7e-165) genomic_reference:SL2.40ch02 gene_region:39193132-39200387 transcript_region:SL2.40ch02:39193132..39200387- go_terms:GO:0042288 functional_description:"Derlin-2 (AHRD V1 ***- B6TKJ7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0042288 NbS00009361g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.92|0.77|1|0.80|0.88|27|307|1778; (*GB) gi|357480257|ref|XP_003610414.1| (e_value=0.0) Abnormal spindle-like microcephaly-associated protein-like protein [Medicago truncatula];; (*SWP) sp|Q8CJ27|ASPM_MOUSE (e_value=5e-77) Abnormal spindle-like microcephaly-associated protein homolog OS=Mus musculus GN=Aspm PE=2 SV=2;; (*TAIR) AT4G21820.1 (e_value=0.0) | Symbols: | binding;calmodulin binding | chr4:11577558-11583871 FORWARD LENGTH=1255;; (*ITAG) Solyc02g080390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39205897-39215832 transcript_region:SL2.40ch02:39205897..39215832+ functional_description:"Abnormal spindle-like microcephaly-associated protein (Fragment) (AHRD V1 *-*- B6UL97_HYLME); contains Interpro domain(s) IPR016146 Calponin-homology "; NbS00009361g0020.1 protein AED:0.37 eAED:0.52 QI:0|0.55|0.6|0.9|0|0.2|10|0|328; (*GB) gi|74038605|dbj|BAE43836.1| (e_value=1e-134) tobamovirus multiplication 1 [Nicotiana tabacum];; (*TAIR) AT4G21790.1 (e_value=6e-106) | Symbols: TOM1, ATTOM1 | tobamovirus multiplication 1 | chr4:11569924-11572163 FORWARD LENGTH=291;; (*ITAG) Solyc02g080370.2.1 (e_value=5e-130) genomic_reference:SL2.40ch02 gene_region:39185287-39192371 transcript_region:SL2.40ch02:39185287..39192371+ go_terms:GO:0005515 functional_description:"Tobamovirus multiplication protein (Fragment) (AHRD V1 ***- B0ZZ80_ARAHY); contains Interpro domain(s) IPR009457 Protein of unknown function DUF1084 "; GO:0005515 NbS00005945g0010.1 protein AED:0.29 eAED:0.29 QI:264|1|0.66|1|1|1|3|0|181; (*GB) gi|56797587|emb|CAI38917.1| (e_value=3e-119) putative WRKY transcription factor 10 [Nicotiana tabacum];; (*SWP) sp|Q8VWQ5|WRK50_ARATH (e_value=4e-36) Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1;; (*TAIR) AT5G26170.1 (e_value=3e-37) | Symbols: WRKY50, ATWRKY50 | WRKY DNA-binding protein 50 | chr5:9147176-9148128 REVERSE LENGTH=173;; (*ITAG) Solyc08g062490.2.1 (e_value=3e-84) genomic_reference:SL2.40ch08 gene_region:48364804-48366524 transcript_region:SL2.40ch08:48364804..48366524+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 16 (AHRD V1 **** C9DI05_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00005945g0012.1 protein AED:0.05 eAED:0.10 QI:6|1|0.5|1|1|1|2|197|1112; (*GB) gi|147772892|emb|CAN73665.1| (e_value=0.0) hypothetical protein VITISV_012140 [Vitis vinifera];; (*TAIR) AT5G26160.1 (e_value=2e-149) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink). | chr5:9143269-9146312 FORWARD LENGTH=976;; (*ITAG) Solyc08g062500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48366574-48370063 transcript_region:SL2.40ch08:48366574..48370063- functional_description:"Unknown Protein (AHRD V1)"; NbS00005945g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.25|0.75|1|1|4|0|162; (*GB) gi|343887284|dbj|BAK61830.1| (e_value=1e-52) NOL1/NOP2/sun family protein [Citrus unshiu];; (*TAIR) AT5G26180.2 (e_value=1e-47) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:9149253-9152595 FORWARD LENGTH=567;; (*ITAG) Solyc08g062560.2.1 (e_value=4e-70) genomic_reference:SL2.40ch08 gene_region:48597719-48608086 transcript_region:SL2.40ch08:48597719..48608086- go_terms:GO:0005515,GO:0016434 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-** B5YF43_DICT6); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0005515,GO:0016434 NbS00039475g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|71; (*ITAG) Solyc01g008070.2.1 (e_value=2e-21) genomic_reference:SL2.40ch01 gene_region:2211926-2218945 transcript_region:SL2.40ch01:2211926..2218945+ functional_description:"Alpha/beta superfamily hydrolase (AHRD V1 *--- D0CIF5_9SYNE); contains Interpro domain(s) IPR010765 Protein of unknown function DUF1350 "; NbS00039475g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|44|84 NbS00011503g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|0.75|0.8|5|372|122; (*GB) gi|81074849|gb|ABB55377.1| (e_value=2e-78) transcription factor NF-Y CCAAT-binding-like protein-like [Solanum tuberosum];; (*SWP) sp|Q67XJ2|NFYBA_ARATH (e_value=1e-53) Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1;; (*TAIR) AT3G53340.1 (e_value=1e-54) | Symbols: NF-YB10 | nuclear factor Y, subunit B10 | chr3:19774667-19775991 REVERSE LENGTH=176;; (*ITAG) Solyc04g049910.2.1 (e_value=3e-80) genomic_reference:SL2.40ch04 gene_region:43871375-43875010 transcript_region:SL2.40ch04:43871375..43875010+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6UBN3_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00020044g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|359480682|ref|XP_002277488.2| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100259450 [Vitis vinifera];; (*TAIR) AT5G66800.1 (e_value=4e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26671433-26672116 FORWARD LENGTH=183;; (*ITAG) Solyc02g065020.1.1 (e_value=1e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:30718020-30718665 transcript_region:SL2.40ch02:30718020..30718665+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025101g0006.1 protein AED:0.16 eAED:0.16 QI:84|1|0.5|1|1|0.5|2|0|120; (*GB) gi|224133736|ref|XP_002321648.1| (e_value=8e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=1e-17) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=8e-19) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc07g007930.2.1 (e_value=1e-16) genomic_reference:SL2.40ch07 gene_region:2591006-2595679 transcript_region:SL2.40ch07:2591006..2595679+ go_terms:GO:0006508 functional_description:"Alkaline alpha galactosidase 2 (AHRD V1 **-- Q575Z7_MAIZE); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0006508 NbS00025101g0003.1 protein AED:0.21 eAED:0.27 QI:0|0.2|0.16|1|0.4|0.5|6|90|212; (*GB) gi|224133736|ref|XP_002321648.1| (e_value=4e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=2e-58) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=2e-59) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc03g058970.2.1 (e_value=2e-53) genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase "; NbS00001933g0003.1 protein AED:0.09 eAED:0.13 QI:134|0|0.5|1|0|0.5|2|0|435; (*GB) gi|224120822|ref|XP_002330960.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SN86|MDHP_ARATH (e_value=0.0) Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1;; (*TAIR) AT3G47520.1 (e_value=0.0) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403;; (*ITAG) Solyc03g115990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59594180-59595418 transcript_region:SL2.40ch03:59594180..59595418+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** O48906_MEDSA); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00001933g0016.1 protein AED:0.21 eAED:0.22 QI:0|0.87|0.88|1|0.81|0.82|17|271|843; (*GB) gi|255554308|ref|XP_002518194.1| (e_value=0.0) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT4G13550.1 (e_value=0.0) | Symbols: | triglyceride lipases;triglyceride lipases | chr4:7871251-7876160 REVERSE LENGTH=715;; (*ITAG) Solyc09g091050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65737600-65747718 transcript_region:SL2.40ch09:65737600..65747718+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00001933g0005.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.5|1|1|2|0|304 NbS00001933g0008.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|63 NbS00001933g0015.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0.5|2|0|221; (*GB) gi|296088269|emb|CBI35777.3| (e_value=7e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g091060.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:65747962-65748767 transcript_region:SL2.40ch09:65747962..65748767- functional_description:"Unknown Protein (AHRD V1)"; NbS00029429g0011.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|1|1|2|0|486; (*GB) gi|255588032|ref|XP_002534483.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=6e-35) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT5G57480.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23279406-23280968 REVERSE LENGTH=520;; (*ITAG) Solyc12g055810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47162272-47164724 transcript_region:SL2.40ch12:47162272..47164724+ go_terms:GO:0005524,GO:0017111 functional_description:"AAA-ATPase (AHRD V1 **-- C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00054185g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.62|0.55|1|0.75|0.77|9|0|833; (*GB) gi|350536569|ref|NP_001234509.1| (e_value=0.0) phospholipase PLDb1 [Solanum lycopersicum];; (*SWP) sp|P93733|PLDB1_ARATH (e_value=0.0) Phospholipase D beta 1 OS=Arabidopsis thaliana GN=PLDBETA1 PE=2 SV=4;; (*TAIR) AT2G42010.1 (e_value=0.0) | Symbols: PLDBETA1, PLDBETA | phospholipase D beta 1 | chr2:17533018-17537990 REVERSE LENGTH=1083;; (*ITAG) Solyc08g080130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60635932-60641390 transcript_region:SL2.40ch08:60635932..60641390+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00015995g0006.1 protein AED:0.17 eAED:0.25 QI:0|0|0|1|0|0|5|0|294; (*GB) gi|53749448|gb|AAU90304.1| (e_value=6e-39) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc04g071390.1.1 (e_value=4e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00015995g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|144; (*ITAG) Solyc12g062880.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011394g0009.1 protein AED:0.38 eAED:0.38 QI:101|0.5|1|1|1|1|3|155|95; (*GB) gi|242096746|ref|XP_002438863.1| (e_value=3e-35) hypothetical protein SORBIDRAFT_10g027440 [Sorghum bicolor];; (*TAIR) AT1G05205.1 (e_value=2e-36) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1509352-1510249 REVERSE LENGTH=91;; (*ITAG) Solyc07g052420.2.1 (e_value=3e-37) genomic_reference:SL2.40ch07 gene_region:58253247-58259534 transcript_region:SL2.40ch07:58253247..58259534- functional_description:"Chromosome 15 contig 1 DNA sequence (AHRD V1 ***- Q00UQ3_OSTTA)"; NbS00011394g0010.1 protein AED:0.29 eAED:0.62 QI:0|0|0|0.66|0|0.33|3|0|128; (*GB) gi|255544272|ref|XP_002513198.1| (e_value=2e-17) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*TAIR) AT3G52140.3 (e_value=1e-15) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr3:19333232-19341295 FORWARD LENGTH=1396;; (*ITAG) Solyc01g086750.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:73460546-73476879 transcript_region:SL2.40ch01:73460546..73476879- go_terms:GO:0003743 functional_description:"Protein TIF31 homolog (AHRD V1 ***- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0003743 NbS00005088g0007.1 protein AED:0.05 eAED:0.11 QI:0|0|0|1|0|0.2|5|0|292; (*GB) gi|343409100|gb|AEM23830.1| (e_value=7e-93) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=5e-60) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT5G23960.1 (e_value=5e-43) | Symbols: ATTPS21, TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=547;; (*ITAG) Solyc07g051940.2.1 (e_value=8e-86) genomic_reference:SL2.40ch07 gene_region:57815208-57818076 transcript_region:SL2.40ch07:57815208..57818076- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00005088g0102.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|448 NbS00005088g0110.1 protein AED:0.03 eAED:0.04 QI:188|1|0.5|1|1|1|2|0|415 NbS00005088g0104.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.25|1|1|4|0|205 NbS00002996g0006.1 protein AED:0.22 eAED:0.23 QI:45|0.5|0.66|1|0.5|0.66|3|0|180; (*GB) gi|147773702|emb|CAN76459.1| (e_value=3e-48) hypothetical protein VITISV_010827 [Vitis vinifera];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=8e-42) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT1G68320.1 (e_value=8e-47) | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286;; (*ITAG) Solyc05g009230.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3372023-3373258 transcript_region:SL2.40ch05:3372023..3373258- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9C9G7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002996g0005.1 protein AED:0.16 eAED:0.16 QI:154|0.95|1|1|1|1|22|392|758; (*GB) gi|225453336|ref|XP_002270305.1| (e_value=0.0) PREDICTED: glutaminyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|P52780|SYQ_LUPLU (e_value=0.0) Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=2;; (*TAIR) AT1G25350.1 (e_value=0.0) | Symbols: OVA9 | glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative | chr1:8889280-8894205 REVERSE LENGTH=795;; (*ITAG) Solyc05g009220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3360296-3369634 transcript_region:SL2.40ch05:3360296..3369634+ go_terms:GO:0032183,GO:0042802 functional_description:"Glutaminyl-tRNA synthetase (AHRD V1 ***- B6UC34_MAIZE); contains Interpro domain(s) IPR004514 Glutaminyl-tRNA synthetase, class Ic "; GO:0032183,GO:0042802 NbS00032299g0005.1 protein AED:0.28 eAED:0.29 QI:20|0.92|0.73|1|0.85|0.86|15|0|606; (*GB) gi|41176619|gb|AAR99599.1| (e_value=0.0) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q8RXD9|DPE2_ARATH (e_value=0.0) 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1;; (*TAIR) AT2G40840.1 (e_value=0.0) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00005444g0003.1 protein AED:0.24 eAED:0.38 QI:0|0|0|1|0|0.33|3|0|255; (*GB) gi|255569458|ref|XP_002525696.1| (e_value=9e-65) set domain protein, putative [Ricinus communis];; (*SWP) sp|Q9SRV2|SUVR3_ARATH (e_value=2e-62) Histone-lysine N-methyltransferase SUVR3 OS=Arabidopsis thaliana GN=SUVR3 PE=2 SV=3;; (*TAIR) AT3G03750.2 (e_value=8e-67) | Symbols: SUVR3, SDG20 | SET domain protein 20 | chr3:939976-941511 FORWARD LENGTH=354;; (*ITAG) Solyc01g068370.2.1 (e_value=8e-106) genomic_reference:SL2.40ch01 gene_region:69968261-69972501 transcript_region:SL2.40ch01:69968261..69972501- go_terms:GO:0046974,GO:0047485 functional_description:"Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 (AHRD V1 **** EHMT2_HUMAN); contains Interpro domain(s) IPR001214 SET "; GO:0046974,GO:0047485 NbS00044297g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|2|432|432; (*GB) gi|225436208|ref|XP_002268337.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245378 [Vitis vinifera];; (*TAIR) AT5G17640.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr5:5811047-5812429 REVERSE LENGTH=432;; (*ITAG) Solyc01g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73157517-73159360 transcript_region:SL2.40ch01:73157517..73159360- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00044297g0009.1 protein AED:0.18 eAED:0.18 QI:180|0.96|0.92|1|0.84|0.92|26|0|2144; (*GB) gi|359489093|ref|XP_002271177.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252352 [Vitis vinifera];; (*ITAG) Solyc01g081430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73136984-73157200 transcript_region:SL2.40ch01:73136984..73157200+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- Q108V0_ORYSJ)"; NbS00014361g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|320; (*GB) gi|356565297|ref|XP_003550878.1| (e_value=2e-74) PREDICTED: MATE efflux family protein DTX1-like [Glycine max];; (*SWP) sp|Q8GXM8|MATE7_ARATH (e_value=7e-18) MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1;; (*TAIR) AT4G23030.1 (e_value=2e-60) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc08g080310.1.1 (e_value=7e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60786990-60788474 transcript_region:SL2.40ch08:60786990..60788474+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00016475g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|469; (*GB) gi|147799808|emb|CAN68359.1| (e_value=0.0) hypothetical protein VITISV_029196 [Vitis vinifera];; (*SWP) sp|Q9C8K7|FBK21_ARATH (e_value=5e-171) F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1;; (*TAIR) AT1G51550.1 (e_value=4e-172) | Symbols: | Kelch repeat-containing F-box family protein | chr1:19117646-19119291 REVERSE LENGTH=478;; (*ITAG) Solyc06g063300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36393612-36399129 transcript_region:SL2.40ch06:36393612..36399129+ go_terms:GO:0004842 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00016475g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|273; (*GB) gi|302398747|gb|ADL36668.1| (e_value=8e-43) COL domain class transcription factor [Malus x domestica];; (*TAIR) AT4G27310.1 (e_value=1e-12) | Symbols: | B-box type zinc finger family protein | chr4:13675853-13676616 FORWARD LENGTH=223;; (*ITAG) Solyc06g063280.1.1 (e_value=4e-85) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:36373261-36374046 transcript_region:SL2.40ch06:36373261..36374046+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *-*- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00016475g0012.1 protein AED:0.27 eAED:0.28 QI:0|0.77|0.6|1|0.66|0.7|10|0|376; (*GB) gi|224100515|ref|XP_002311906.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G51560.1 (e_value=0.0) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr1:19119900-19121859 REVERSE LENGTH=392;; (*ITAG) Solyc06g063290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36385129-36391488 transcript_region:SL2.40ch06:36385129..36391488+ go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 ***- D8DKZ3_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00016854g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.66|1|1|3|0|359; (*GB) gi|419789|pir||S31196 (e_value=0.0) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=4e-156) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=3e-157) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc08g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62979638-62981391 transcript_region:SL2.40ch08:62979638..62981391- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00016854g0015.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|0.66|0.57|7|212|480; (*GB) gi|225426550|ref|XP_002272230.1| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100244469 [Vitis vinifera];; (*TAIR) AT1G32810.2 (e_value=1e-57) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:11881810-11885843 FORWARD LENGTH=1068;; (*ITAG) Solyc08g083290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62958692-62969194 transcript_region:SL2.40ch08:62958692..62969194+ functional_description:"Location of EST 206I21T7 gb|N37185 (AHRD V1 *-*- Q9MAQ7_ARATH)"; NbS00016854g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.85|0.73|0.93|0.78|0.6|15|0|930; (*GB) gi|359473972|ref|XP_002279130.2| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera];; (*SWP) sp|Q93Y01|UBP9_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1;; (*TAIR) AT4G10590.1 (e_value=0.0) | Symbols: UBP10 | ubiquitin-specific protease 10 | chr4:6538919-6543272 REVERSE LENGTH=910;; (*ITAG) Solyc08g083300.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62970183-62979608 transcript_region:SL2.40ch08:62970183..62979608+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9RYW0_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0004197 NbS00016854g0016.1 protein AED:0.26 eAED:0.26 QI:0|0.77|0.8|1|0.66|0.6|10|77|345; (*GB) gi|225426554|ref|XP_002272348.1| (e_value=4e-157) PREDICTED: alcohol dehydrogenase-like 3 [Vitis vinifera];; (*SWP) sp|A1L4Y2|ADHL3_ARATH (e_value=2e-135) Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1;; (*TAIR) AT1G32780.1 (e_value=1e-136) | Symbols: | GroES-like zinc-binding dehydrogenase family protein | chr1:11869977-11872595 REVERSE LENGTH=394;; (*ITAG) Solyc08g083280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62949774-62952151 transcript_region:SL2.40ch08:62949774..62952151+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** B6TDN5_MAIZE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00019124g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|113; (*GB) gi|225427377|ref|XP_002282974.1| (e_value=1e-50) PREDICTED: 60S ribosomal protein L37a-like [Vitis vinifera];; (*SWP) sp|Q5QM99|RL37A_ORYSJ (e_value=5e-51) 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=3 SV=1;; (*TAIR) AT3G10950.1 (e_value=2e-51) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:3423893-3424566 FORWARD LENGTH=92;; (*ITAG) Solyc08g077710.2.1 (e_value=5e-55) genomic_reference:SL2.40ch08 gene_region:58783853-58784750 transcript_region:SL2.40ch08:58783853..58784750+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0003735,GO:0005515 NbS00019124g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|504; (*GB) gi|359474508|ref|XP_003631483.1| (e_value=2e-165) PREDICTED: MORN repeat-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=1e-27) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT4G17080.1 (e_value=1e-152) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr4:9601570-9603815 FORWARD LENGTH=513;; (*ITAG) Solyc08g077730.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58788938-58793059 transcript_region:SL2.40ch08:58788938..58793059- go_terms:GO:0042302 functional_description:"1-phosphatidylinositol-4-phosphate 5-kinase-like protein (AHRD V1 *--- Q67UY9_ORYSJ); contains Interpro domain(s) IPR003409 MORN motif "; GO:0042302 NbS00021799g0007.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|0.33|0.25|4|0|475; (*GB) gi|86279654|gb|ABC94482.1| (e_value=0.0) putative taxane 13-alpha-hydroxylase cytochrome P450 [Artemisia annua];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=5e-150) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=2e-142) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc07g042880.1.1 (e_value=1e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53723939-53726909 transcript_region:SL2.40ch07:53723939..53726909+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00051208g0004.1 protein AED:0.28 eAED:0.31 QI:0|0.66|0.6|1|0.77|0.8|10|242|583; (*GB) gi|118486445|gb|ABK95062.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q8W4H1|GAT26_ARATH (e_value=1e-127) GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1;; (*TAIR) AT4G17570.3 (e_value=1e-133) | Symbols: GATA26 | GATA transcription factor 26 | chr4:9784329-9786974 REVERSE LENGTH=514;; (*ITAG) Solyc08g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1747750-1754041 transcript_region:SL2.40ch08:1747750..1754041- go_terms:GO:0006355 functional_description:"GATA transcription factor 29 (AHRD V1 *-*- B4FZE9_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00029307g0003.1 protein AED:0.00 eAED:0.00 QI:188|1|1|1|0|0.5|2|253|381; (*GB) gi|359483608|ref|XP_002274345.2| (e_value=2e-107) PREDICTED: probable purine permease 10-like [Vitis vinifera];; (*SWP) sp|O49726|PUP9_ARATH (e_value=5e-103) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=3e-102) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc02g071090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35154902-35157324 transcript_region:SL2.40ch02:35154902..35157324- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00034398g0005.1 protein AED:0.12 eAED:0.13 QI:0|0.6|0.63|0.90|0.8|0.63|11|340|558; (*GB) gi|225459806|ref|XP_002285912.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit beta [Vitis vinifera];; (*SWP) sp|Q4R6F8|TCPB_MACFA (e_value=0.0) T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3;; (*TAIR) AT5G20890.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527;; (*ITAG) Solyc11g069000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50652125-50657452 transcript_region:SL2.40ch11:50652125..50657452- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit beta (AHRD V1 ***- B6T8X5_MAIZE); contains Interpro domain(s) IPR012716 T-complex protein 1, beta subunit "; GO:0044267,GO:0006457 NbS00006476g0007.1 protein AED:0.38 eAED:0.39 QI:0|0.76|0.81|0.96|0.76|0.74|27|309|910; (*GB) gi|350538577|ref|NP_001233838.1| (e_value=0.0) carotenoid cleavage dioxygenase 1-2 [Solanum lycopersicum];; (*SWP) sp|Q84KG5|CCD_CROSA (e_value=0.0) Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1;; (*TAIR) AT3G63520.1 (e_value=0.0) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538;; (*ITAG) Solyc01g087260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73957796-73970716 transcript_region:SL2.40ch01:73957796..73970716- go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase 1B"; GO:0045549 NbS00034790g0017.1 protein AED:0.36 eAED:0.36 QI:35|0.66|0.75|1|0|0.25|4|0|184; (*GB) gi|224077174|ref|XP_002305164.1| (e_value=7e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67080.1 (e_value=6e-49) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc02g063170.2.1 (e_value=1e-74) genomic_reference:SL2.40ch02 gene_region:29819149-29821714 transcript_region:SL2.40ch02:29819149..29821714+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00034790g0001.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|318; (*GB) gi|224079321|ref|XP_002305820.1| (e_value=3e-161) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9HFU4|MPI_CRYNJ (e_value=1e-77) Mannose-6-phosphate isomerase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=MAN1 PE=3 SV=2;; (*TAIR) AT3G02570.1 (e_value=9e-141) | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomerase, type I | chr3:543463-545478 REVERSE LENGTH=432;; (*ITAG) Solyc02g063220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29847338-29852456 transcript_region:SL2.40ch02:29847338..29852456- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 2"; GO:0004476 NbS00034790g0018.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.2|0.8|0.75|0.4|5|0|344; (*GB) gi|225452045|ref|XP_002280375.1| (e_value=3e-123) PREDICTED: UDP-N-acetylenolpyruvoylglucosamine reductase [Vitis vinifera];; (*SWP) sp|Q6MAQ1|MURB_PARUW (e_value=4e-74) UDP-N-acetylenolpyruvoylglucosamine reductase OS=Protochlamydia amoebophila (strain UWE25) GN=murB PE=3 SV=1;; (*ITAG) Solyc02g063190.2.1 (e_value=2e-89) genomic_reference:SL2.40ch02 gene_region:29822235-29823190 transcript_region:SL2.40ch02:29822235..29823190- go_terms:GO:0055114,GO:0050660 functional_description:"UDP-N-acetylenolpyruvoylglucosamine reductase (AHRD V1 *-*- D1R942_9CHLA); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0055114,GO:0050660 NbS00034790g0019.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|540; (*GB) gi|147769371|emb|CAN72496.1| (e_value=3e-109) hypothetical protein VITISV_010511 [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=4e-66) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=3e-67) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc07g006770.2.1 (e_value=5e-110) genomic_reference:SL2.40ch07 gene_region:1617784-1621648 transcript_region:SL2.40ch07:1617784..1621648- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00034790g0021.1 protein AED:0.37 eAED:0.39 QI:0|1|0|1|0.5|0.33|3|0|389; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=5e-112) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-79) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=1e-80) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g006030.2.1 (e_value=8e-107) genomic_reference:SL2.40ch03 gene_region:712130-717082 transcript_region:SL2.40ch03:712130..717082- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00034790g0020.1 protein AED:0.48 eAED:0.60 QI:0|0|0|1|0|0.5|2|0|138; (*GB) gi|298204751|emb|CBI25249.3| (e_value=7e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g063210.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29844094-29846209 transcript_region:SL2.40ch02:29844094..29846209- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00048324g0002.1 protein AED:0.17 eAED:0.18 QI:521|0.5|0.66|1|0|0|3|868|148; (*GB) gi|350537681|ref|NP_001234304.1| (e_value=4e-87) phosphoenolpyruvate carboxylase kinase 2 [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=8e-67) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.2 (e_value=1e-68) | Symbols: PPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753150 FORWARD LENGTH=276;; (*ITAG) Solyc06g053620.2.1 (e_value=7e-90) genomic_reference:SL2.40ch06 gene_region:32942713-32944228 transcript_region:SL2.40ch06:32942713..32944228- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00048324g0010.1 protein AED:0.46 eAED:0.71 QI:19|0|0.66|1|1|1|3|89|91 NbS00023484g0015.1 protein AED:0.27 eAED:0.27 QI:282|0.75|0.6|1|0.75|0.8|5|0|262; (*GB) gi|255546215|ref|XP_002514167.1| (e_value=7e-91) o-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9C5D7|CAMT3_ARATH (e_value=1e-86) Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1;; (*TAIR) AT4G26220.1 (e_value=8e-88) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232;; (*ITAG) Solyc04g063210.2.1 (e_value=3e-117) genomic_reference:SL2.40ch04 gene_region:54468419-54470438 transcript_region:SL2.40ch04:54468419..54470438- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A0SDG2_9CONI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00023484g0012.1 protein AED:0.10 eAED:0.10 QI:1402|0.75|0.8|1|0.5|0.6|5|282|216; (*GB) gi|224122628|ref|XP_002330529.1| (e_value=7e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5D7|CAMT3_ARATH (e_value=3e-98) Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1;; (*TAIR) AT4G26220.1 (e_value=2e-99) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232;; (*ITAG) Solyc03g032220.2.1 (e_value=2e-114) genomic_reference:SL2.40ch03 gene_region:9015738-9018668 transcript_region:SL2.40ch03:9015738..9018668- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A2PZD5_IPONI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00023484g0003.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.6|1|1|5|0|605; (*GB) gi|359496086|ref|XP_003635148.1| (e_value=9e-38) PREDICTED: uncharacterized protein LOC100853163 [Vitis vinifera];; (*TAIR) AT5G04730.1 (e_value=5e-22) | Symbols: | Ankyrin-repeat containing protein | chr5:1364101-1367303 REVERSE LENGTH=603;; (*ITAG) Solyc09g098050.2.1 (e_value=3e-80) genomic_reference:SL2.40ch09 gene_region:67235158-67238245 transcript_region:SL2.40ch09:67235158..67238245+ functional_description:"Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Y5262_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00015724g0005.1 protein AED:0.19 eAED:0.19 QI:3|1|0.5|1|1|1|2|174|69; (*GB) gi|357518259|ref|XP_003629418.1| (e_value=1e-26) Epoxide hydrolase [Medicago truncatula];; (*TAIR) AT4G36610.1 (e_value=2e-23) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17265545-17267274 REVERSE LENGTH=317;; (*ITAG) Solyc02g085180.2.1 (e_value=8e-32) genomic_reference:SL2.40ch02 gene_region:42736730-42739537 transcript_region:SL2.40ch02:42736730..42739537- go_terms:GO:0003824 functional_description:"Catalytic/ hydrolase (AHRD V1 **** B6TJ32_MAIZE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00015724g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0.88|1|1|1|18|0|484; (*GB) gi|225430744|ref|XP_002266704.1| (e_value=0.0) PREDICTED: sugar transporter ERD6-like 6 [Vitis vinifera];; (*SWP) sp|Q93YP9|ERDL4_ARATH (e_value=0.0) Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1;; (*TAIR) AT1G19450.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:6731671-6734633 REVERSE LENGTH=488;; (*ITAG) Solyc02g085170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42731172-42736962 transcript_region:SL2.40ch02:42731172..42736962+ go_terms:GO:0015519 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00053141g0003.1 protein AED:0.37 eAED:0.37 QI:41|0|0.66|1|0|0.66|3|348|236; (*GB) gi|87244453|gb|ABD34618.1| (e_value=8e-136) green ripe-like 1 [Solanum tuberosum];; (*SWP) sp|F4ITL6|RTE1_ARATH (e_value=9e-90) Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1;; (*TAIR) AT2G26070.1 (e_value=7e-91) | Symbols: RTE1 | Protein of unknown function (DUF778) | chr2:11105741-11106607 REVERSE LENGTH=250;; (*ITAG) Solyc08g065320.2.1 (e_value=2e-138) genomic_reference:SL2.40ch08 gene_region:50439456-50440648 transcript_region:SL2.40ch08:50439456..50440648+ functional_description:"Transmembrane protein 222 (Fragment) (AHRD V1 *--- Q5SSD9_HUMAN); contains Interpro domain(s) IPR008496 Protein of unknown function DUF778 "; NbS00000386g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|288; (*GB) gi|333805715|gb|AEF98448.1| (e_value=2e-78) BRANCHED1A isoform 2 [Solanum tuberosum];; (*SWP) sp|A1YKT1|TCP18_ARATH (e_value=5e-25) Transcription factor TCP18 OS=Arabidopsis thaliana GN=TCP18 PE=2 SV=1;; (*TAIR) AT3G18550.2 (e_value=7e-27) | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcription factor | chr3:6383769-6385604 FORWARD LENGTH=429;; (*ITAG) Solyc03g119770.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:62381910-62383042 transcript_region:SL2.40ch03:62381910..62383042+ functional_description:"CYCLOIDEA-like (Fragment) (AHRD V1 *-*- Q2TKW2_9DIPS); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00000386g0007.1 protein AED:0.24 eAED:0.24 QI:170|1|0.92|1|0.76|0.92|14|335|466; (*GB) gi|225455850|ref|XP_002273782.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera];; (*TAIR) AT1G73950.1 (e_value=0.0) | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:27800126-27804476 REVERSE LENGTH=466;; (*ITAG) Solyc03g119760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62357400-62371990 transcript_region:SL2.40ch03:62357400..62371990- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 4 (Predicted) (AHRD V1 *--- B0KWH9_CALJA); contains Interpro domain(s) IPR019396 Transmembrane Fragile-X-F-associated protein "; GO:0008270 NbS00001219g0013.1 protein AED:0.01 eAED:0.01 QI:97|1|1|1|0.5|0.66|3|96|349; (*GB) gi|225446871|ref|XP_002283883.1| (e_value=5e-53) PREDICTED: uncharacterized protein LOC100259123 [Vitis vinifera];; (*TAIR) AT2G42840.1 (e_value=2e-47) | Symbols: PDF1 | protodermal factor 1 | chr2:17826327-17827426 REVERSE LENGTH=306;; (*ITAG) Solyc12g011010.1.1 (e_value=3e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3870609-3872065 transcript_region:SL2.40ch12:3870609..3872065- functional_description:"Meiosis 5 (AHRD V1 *-*- B6T5X0_MAIZE)"; NbS00001219g0012.1 protein AED:0.21 eAED:0.21 QI:205|1|1|1|0.5|0.66|3|6|51 NbS00001219g0008.1 protein AED:0.25 eAED:0.25 QI:122|1|1|1|0.91|0.92|13|428|511; (*GB) gi|225446893|ref|XP_002284064.1| (e_value=0.0) PREDICTED: citrate synthase, glyoxysomal [Vitis vinifera];; (*SWP) sp|Q9LXS6|CISY2_ARATH (e_value=0.0) Citrate synthase 2, peroxisomal OS=Arabidopsis thaliana GN=CSY2 PE=2 SV=1;; (*TAIR) AT3G58750.1 (e_value=0.0) | Symbols: CSY2 | citrate synthase 2 | chr3:21724564-21727458 REVERSE LENGTH=514;; (*ITAG) Solyc12g011000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3858049-3864969 transcript_region:SL2.40ch12:3858049..3864969- go_terms:GO:0005737,GO:0006099,GO:0044262 functional_description:"Citrate synthase (AHRD V1 ***- B9IFM7_POPTR); contains Interpro domain(s) IPR010953 Citrate synthase, type II "; GO:0005737,GO:0006099,GO:0044262 NbS00001219g0018.1 protein AED:0.28 eAED:0.31 QI:0|1|0.8|1|0.75|0.8|5|457|338; (*GB) gi|225446869|ref|XP_002283859.1| (e_value=2e-128) PREDICTED: uncharacterized protein LOC100252338 [Vitis vinifera];; (*SWP) sp|P54452|YQEG_BACSU (e_value=9e-12) Uncharacterized protein yqeG OS=Bacillus subtilis (strain 168) GN=yqeG PE=4 SV=1;; (*TAIR) AT3G58830.1 (e_value=4e-106) | Symbols: | haloacid dehalogenase (HAD) superfamily protein | chr3:21755172-21756637 REVERSE LENGTH=343;; (*ITAG) Solyc12g011020.1.1 (e_value=3e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3877790-3880867 transcript_region:SL2.40ch12:3877790..3880867- functional_description:"Had superfamily (Subfamily iiia) phosphatase (AHRD V1 *-*- B5YDI1_DICT6); contains Interpro domain(s) IPR010021 HAD-superfamily phosphatase, subfamily IIIA "; NbS00015460g0004.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|367; (*GB) gi|255538966|ref|XP_002510548.1| (e_value=2e-133) Zeamatin precursor, putative [Ricinus communis];; (*SWP) sp|P83332|TLP1_PRUPE (e_value=1e-72) Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1;; (*TAIR) AT1G75800.1 (e_value=3e-120) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330;; (*ITAG) Solyc04g081550.2.1 (e_value=1e-171) genomic_reference:SL2.40ch04 gene_region:63087808-63090225 transcript_region:SL2.40ch04:63087808..63090225+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00002269g0003.1 protein AED:0.16 eAED:0.16 QI:198|1|1|1|0.71|0.75|8|333|226; (*GB) gi|351726060|ref|NP_001235834.1| (e_value=5e-84) uncharacterized protein LOC100305725 [Glycine max];; (*SWP) sp|Q9SHC8|VAP12_ARATH (e_value=3e-77) Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1;; (*TAIR) AT2G45140.1 (e_value=2e-78) | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611029-18612971 FORWARD LENGTH=239;; (*ITAG) Solyc06g034220.2.1 (e_value=3e-123) genomic_reference:SL2.40ch06 gene_region:20648201-20654157 transcript_region:SL2.40ch06:20648201..20654157+ go_terms:GO:0046982 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0046982 NbS00003794g0021.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|328; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=9e-108) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q7XJ98|KATAM_ARATH (e_value=2e-58) Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1;; (*TAIR) AT5G62220.1 (e_value=5e-104) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00003794g0019.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|62; (*ITAG) Solyc07g049630.1.1 (e_value=3e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:57284651-57285037 transcript_region:SL2.40ch07:57284651..57285037+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003794g0020.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|205; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=8e-55) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=9e-35) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=5e-50) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc07g049610.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:57276175-57277638 transcript_region:SL2.40ch07:57276175..57277638- go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RAJ4_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00006873g0005.1 protein AED:0.51 eAED:0.51 QI:0|0|0|1|1|1|2|0|109; (*GB) gi|218195479|gb|EEC77906.1| (e_value=5e-22) hypothetical protein OsI_17230 [Oryza sativa Indica Group];; (*SWP) sp|O64747|WRK35_ARATH (e_value=8e-23) Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1;; (*TAIR) AT2G34830.1 (e_value=6e-24) | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding protein 35 | chr2:14693839-14696378 REVERSE LENGTH=427;; (*ITAG) Solyc02g021680.2.1 (e_value=3e-24) genomic_reference:SL2.40ch02 gene_region:14206227-14209227 transcript_region:SL2.40ch02:14206227..14209227+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 37 (AHRD V1 *-*- Q6IEP4_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00006873g0006.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|93 NbS00006873g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|1|0.66|3|274|103 NbS00006873g0002.1 protein AED:0.19 eAED:0.19 QI:204|1|1|1|0.85|0.75|8|396|512; (*GB) gi|255555937|ref|XP_002519004.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G32080.1 (e_value=0.0) | Symbols: | membrane protein, putative | chr1:11537572-11539756 REVERSE LENGTH=512;; (*ITAG) Solyc08g076290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57425191-57429464 transcript_region:SL2.40ch08:57425191..57429464- go_terms:GO:0016020 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007300 LrgB-like protein "; GO:0016020 NbS00006873g0013.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|107; (*GB) gi|85068632|gb|ABC69396.1| (e_value=4e-15) CYP71D48v2 [Nicotiana tabacum];; (*ITAG) Solyc08g076250.1.1 (e_value=4e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:57418381-57420194 transcript_region:SL2.40ch08:57418381..57420194+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006873g0014.1 protein AED:0.38 eAED:0.60 QI:44|0|0|1|0|0|2|0|78; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=2e-15) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=7e-17) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*ITAG) Solyc04g083140.1.1 (e_value=9e-18) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00009273g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|0|345; (*GB) gi|224111802|ref|XP_002315983.1| (e_value=2e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96519|PER11_ARATH (e_value=1e-164) Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1;; (*TAIR) AT1G68850.1 (e_value=1e-165) | Symbols: | Peroxidase superfamily protein | chr1:25883806-25885177 REVERSE LENGTH=336;; (*ITAG) Solyc05g010330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4476583-4479812 transcript_region:SL2.40ch05:4476583..4479812+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00009273g0010.1 protein AED:0.15 eAED:0.21 QI:106|0|0.4|1|0.5|0.6|5|510|279; (*GB) gi|122245645|sp|Q33DL3.1|CFI_TOBAC (e_value=6e-107) RecName: Full=Chalcone--flavonone isomerase; Short=Chalcone isomerase;; (*SWP) sp|Q33DL3|CFI_TOBAC (e_value=2e-108) Chalcone--flavonone isomerase OS=Nicotiana tabacum GN=CHI PE=2 SV=1;; (*TAIR) AT3G55120.1 (e_value=4e-48) | Symbols: TT5, A11, CFI | Chalcone-flavanone isomerase family protein | chr3:20430248-20431415 REVERSE LENGTH=246;; (*ITAG) Solyc05g010320.2.1 (e_value=7e-73) genomic_reference:SL2.40ch05 gene_region:4465276-4467913 transcript_region:SL2.40ch05:4465276..4467913+ go_terms:GO:0042398,GO:0009813 functional_description:"Chalcone--flavonone isomerase (AHRD V1 ***- D7LV11_ARALY); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398,GO:0009813 NbS00009273g0012.1 protein AED:0.32 eAED:0.96 QI:0|0|0|1|0|0|2|0|66 NbS00035708g0008.1 protein AED:0.29 eAED:0.29 QI:154|0.6|0.5|1|0.8|0.66|6|0|482; (*GB) gi|225429039|ref|XP_002268333.1| (e_value=0.0) PREDICTED: magnesium transporter MRS2-3-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LJN2|MRS23_ARATH (e_value=1e-142) Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=1 SV=1;; (*TAIR) AT3G19640.1 (e_value=1e-143) | Symbols: MGT4, MRS2-3 | magnesium transporter 4 | chr3:6820969-6823104 FORWARD LENGTH=484;; (*ITAG) Solyc01g106900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86369662-86378019 transcript_region:SL2.40ch01:86369662..86378019+ go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-3 (AHRD V1 **** MRS23_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00035708g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|255583383|ref|XP_002532452.1| (e_value=4e-32) mads box protein, putative [Ricinus communis];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=1e-20) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=1e-21) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106700.2.1 (e_value=2e-83) genomic_reference:SL2.40ch01 gene_region:86228943-86229953 transcript_region:SL2.40ch01:86228943..86229953+ go_terms:GO:0017075 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q75V01_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00003222g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=7e-33) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006090.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00003222g0006.1 protein AED:0.21 eAED:0.31 QI:0|0|0|0.75|0.33|0.75|4|0|182; (*GB) gi|356519782|ref|XP_003528548.1| (e_value=4e-31) PREDICTED: uncharacterized protein LOC100785682 [Glycine max];; (*TAIR) AT5G16780.1 (e_value=4e-29) | Symbols: DOT2, MDF | SART-1 family | chr5:5517784-5521566 REVERSE LENGTH=820;; (*ITAG) Solyc11g008470.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2660109-2664044 transcript_region:SL2.40ch11:2660109..2664044+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- B0WPY3_CULQU); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00003222g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|283 NbS00003222g0103.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|570 NbS00025028g0005.1 protein AED:0.07 eAED:0.07 QI:274|1|1|1|1|1|3|378|226; (*GB) gi|225452132|ref|XP_002262897.1| (e_value=2e-69) PREDICTED: uncharacterized protein At3g27210-like [Vitis vinifera];; (*SWP) sp|Q9LK32|Y3721_ARATH (e_value=4e-12) Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1;; (*TAIR) AT3G01860.1 (e_value=2e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:302869-304329 FORWARD LENGTH=223;; (*ITAG) Solyc03g005030.2.1 (e_value=5e-96) genomic_reference:SL2.40ch03 gene_region:35970-38929 transcript_region:SL2.40ch03:35970..38929- functional_description:"Unknown Protein (AHRD V1)"; NbS00027454g0003.1 protein AED:0.04 eAED:0.04 QI:196|1|1|1|1|1|5|179|295; (*GB) gi|225454759|ref|XP_002274164.1| (e_value=3e-118) PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera];; (*TAIR) AT4G17720.1 (e_value=2e-104) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc06g072770.2.1 (e_value=7e-149) genomic_reference:SL2.40ch06 gene_region:41263197-41266916 transcript_region:SL2.40ch06:41263197..41266916+ go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00036078g0001.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.33|1|1|1|3|0|223; (*GB) gi|118488325|gb|ABK95981.1| (e_value=2e-107) unknown [Populus trichocarpa];; (*SWP) sp|F4ITL6|RTE1_ARATH (e_value=3e-96) Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1;; (*TAIR) AT2G26070.1 (e_value=2e-97) | Symbols: RTE1 | Protein of unknown function (DUF778) | chr2:11105741-11106607 REVERSE LENGTH=250;; (*ITAG) Solyc01g104340.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84508287-84509191 transcript_region:SL2.40ch01:84508287..84509191+ go_terms:GO:0005515 functional_description:"Transmembrane protein 222 (Fragment) (AHRD V1 **-- Q5SSC2_HUMAN); contains Interpro domain(s) IPR008496 Protein of unknown function DUF778 "; GO:0005515 NbS00017431g0006.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0|0.33|3|238|92 NbS00017431g0002.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|736; (*GB) gi|359492699|ref|XP_002280968.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera];; (*SWP) sp|Q9FXH1|PPR52_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1;; (*TAIR) AT1G19720.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:6819926-6822610 REVERSE LENGTH=894;; (*ITAG) Solyc04g080830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62501648-62505187 transcript_region:SL2.40ch04:62501648..62505187- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017431g0005.1 protein AED:0.38 eAED:0.38 QI:0|0.75|0.8|1|0.75|0.6|5|237|504; (*GB) gi|227809538|gb|ACP40988.1| (e_value=0.0) cytokinin oxidase/dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q67YU0|CKX5_ARATH (e_value=0.0) Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1;; (*TAIR) AT1G75450.1 (e_value=0.0) | Symbols: CKX5, ATCKX5, ATCKX6 | cytokinin oxidase 5 | chr1:28315248-28318064 REVERSE LENGTH=540;; (*ITAG) Solyc04g080820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62485178-62490693 transcript_region:SL2.40ch04:62485178..62490693- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase (AHRD V1 **** C3VPM7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00019673g0006.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|12963415|gb|AAK11255.1|AF329729_1 (e_value=2e-82) regulator of gene silencing [Nicotiana tabacum];; (*SWP) sp|Q8RYK0|CML31_ORYSJ (e_value=5e-30) Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=8e-29) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc11g071760.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52225377-52225973 transcript_region:SL2.40ch11:52225377..52225973- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00019673g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|681; (*GB) gi|225431663|ref|XP_002265210.1| (e_value=0.0) PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q7Z2Z2|ETUD1_HUMAN (e_value=1e-119) Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2;; (*TAIR) AT3G22980.1 (e_value=0.0) | Symbols: | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:8160269-8163316 REVERSE LENGTH=1015;; (*ITAG) Solyc11g071770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52229263-52232337 transcript_region:SL2.40ch11:52229263..52232337- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor Tu family protein (AHRD V1 **** D7L2H7_ARALY); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00019673g0009.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|12963415|gb|AAK11255.1|AF329729_1 (e_value=5e-83) regulator of gene silencing [Nicotiana tabacum];; (*SWP) sp|Q9FIH9|CML37_ARATH (e_value=8e-35) Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1;; (*TAIR) AT5G42380.1 (e_value=6e-36) | Symbols: CML39, CML37 | calmodulin like 37 | chr5:16942758-16943315 REVERSE LENGTH=185;; (*ITAG) Solyc11g071760.1.1 (e_value=1e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52225377-52225973 transcript_region:SL2.40ch11:52225377..52225973- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00019673g0015.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0.5|0.33|3|0|330; (*GB) gi|297835306|ref|XP_002885535.1| (e_value=0.0) elongation factor Tu family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O74945|RIA1_SCHPO (e_value=9e-87) Ribosome assembly protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ria1 PE=2 SV=1;; (*TAIR) AT3G22980.1 (e_value=0.0) | Symbols: | Ribosomal protein S5/Elongation factor G/III/V family protein | chr3:8160269-8163316 REVERSE LENGTH=1015;; (*ITAG) Solyc11g071770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52229263-52232337 transcript_region:SL2.40ch11:52229263..52232337- go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor Tu family protein (AHRD V1 **** D7L2H7_ARALY); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005515,GO:0003746 NbS00028155g0018.1 protein AED:0.26 eAED:0.26 QI:1337|0.94|1|1|0.94|0.78|19|274|307; (*GB) gi|147856346|emb|CAN81781.1| (e_value=1e-141) hypothetical protein VITISV_019910 [Vitis vinifera];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=4e-123) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=3e-124) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106340.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:86031605-86039647 transcript_region:SL2.40ch01:86031605..86039647+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00028155g0016.1 protein AED:0.32 eAED:0.34 QI:403|0.95|0.90|1|0.8|0.76|21|16|645; (*GB) gi|255554561|ref|XP_002518319.1| (e_value=0.0) glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=0.0) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=0.0) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86051299-86059178 transcript_region:SL2.40ch01:86051299..86059178+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00028155g0017.1 protein AED:0.36 eAED:0.36 QI:164|0.61|0.71|1|0.53|0.57|14|41|445; (*GB) gi|147856346|emb|CAN81781.1| (e_value=1e-73) hypothetical protein VITISV_019910 [Vitis vinifera];; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=3e-61) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=3e-62) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106330.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:86019080-86030855 transcript_region:SL2.40ch01:86019080..86030855+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- Q5L059_GEOKA); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00028155g0021.1 protein AED:0.25 eAED:0.31 QI:0|0|0|1|0.5|0.66|3|0|106; (*GB) gi|730558|sp|P41098.1|RL34_TOBAC (e_value=3e-39) RecName: Full=60S ribosomal protein L34;; (*SWP) sp|P41098|RL34_TOBAC (e_value=1e-40) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G69620.1 (e_value=1e-39) | Symbols: RPL34 | ribosomal protein L34 | chr1:26189900-26191081 FORWARD LENGTH=119;; (*ITAG) Solyc05g007560.2.1 (e_value=3e-40) genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00002342g0015.1 protein AED:0.09 eAED:0.09 QI:16|1|1|1|0.8|0.90|11|206|424; (*GB) gi|359491879|ref|XP_002273598.2| (e_value=0.0) PREDICTED: probable inactive serine/threonine-protein kinase bub1 [Vitis vinifera];; (*SWP) sp|Q54CV5|BUB1_DICDI (e_value=8e-32) Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1;; (*TAIR) AT2G33560.2 (e_value=1e-155) | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited by benzymidazol 1) | chr2:14213810-14215918 REVERSE LENGTH=396;; (*ITAG) Solyc04g082900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63987936-63992486 transcript_region:SL2.40ch04:63987936..63992486- functional_description:"Mitotic checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- BUB1_MOUSE); contains Interpro domain(s) IPR013212 Mad3/BUB1 homology region 1 "; NbS00002342g0002.1 protein AED:0.11 eAED:0.18 QI:180|0.33|0.25|1|1|1|4|141|285; (*GB) gi|156712750|dbj|BAF76429.1| (e_value=3e-120) basic region leucine zipper protein [Nicotiana tabacum];; (*ITAG) Solyc04g082890.2.1 (e_value=5e-79) genomic_reference:SL2.40ch04 gene_region:63984560-63987078 transcript_region:SL2.40ch04:63984560..63987078- go_terms:GO:0003700 functional_description:"BZIP transcription factor protein (AHRD V1 **** B2CM16_SOLCH); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003700 NbS00002342g0006.1 protein AED:0.15 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|306; (*GB) gi|224086130|ref|XP_002307825.1| (e_value=4e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMY5|U2AFB_ARATH (e_value=3e-112) Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=2e-113) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc10g083640.1.1 (e_value=3e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62756425-62760116 transcript_region:SL2.40ch10:62756425..62760116- go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 *-*- B6T3Q5_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00002342g0018.1 protein AED:0.21 eAED:0.21 QI:368|1|0.94|1|1|1|19|0|616; (*GB) gi|129881|sp|P21342.1|PFPA_SOLTU (e_value=0.0) RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase;; (*SWP) sp|P21342|PFPA_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G76550.1 (e_value=0.0) | Symbols: | Phosphofructokinase family protein | chr1:28722900-28726929 REVERSE LENGTH=617;; (*ITAG) Solyc04g082880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63978067-63983995 transcript_region:SL2.40ch04:63978067..63983995- go_terms:GO:0005515 functional_description:"Diphosphate--fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- C8PT93_9SPIO); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005515 NbS00002342g0020.1 protein AED:0.24 eAED:0.25 QI:0|0.6|0.5|0.83|1|1|6|1378|182; (*ITAG) Solyc11g010560.1.1 (e_value=4e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00014603g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.6|0.8|1|1|5|88|216; (*GB) gi|359479518|ref|XP_002274218.2| (e_value=9e-130) PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=2e-130) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=2e-131) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc01g009520.2.1 (e_value=4e-141) genomic_reference:SL2.40ch01 gene_region:3780910-3784239 transcript_region:SL2.40ch01:3780910..3784239+ go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00014603g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0.5|1|1|1|2|254|506; (*GB) gi|22128587|gb|AAM52339.1| (e_value=0.0) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-133) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-132) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00014603g0007.1 protein AED:0.47 eAED:0.67 QI:4|0|0.33|0.66|1|0.66|3|4|73 NbS00014603g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|255565603|ref|XP_002523791.1| (e_value=7e-41) catalytic, putative [Ricinus communis];; (*TAIR) AT5G22460.2 (e_value=3e-29) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:7443659-7445269 REVERSE LENGTH=340;; (*ITAG) Solyc11g067260.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50079836-50084792 transcript_region:SL2.40ch11:50079836..50084792+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00028780g0005.1 protein AED:0.31 eAED:0.32 QI:10|0.5|0.33|1|0.5|0.66|3|0|574; (*GB) gi|359481502|ref|XP_002274593.2| (e_value=4e-83) PREDICTED: uncharacterized protein LOC100248303 [Vitis vinifera];; (*TAIR) AT3G53540.1 (e_value=3e-45) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805-19850670 REVERSE LENGTH=924;; (*ITAG) Solyc09g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:521012-526426 transcript_region:SL2.40ch09:521012..526426+ functional_description:"Os03g0819700 protein (Fragment) (AHRD V1 *-*- Q0DMA9_ORYSJ)"; NbS00028780g0002.1 protein AED:0.32 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|494; (*GB) gi|359481502|ref|XP_002274593.2| (e_value=7e-63) PREDICTED: uncharacterized protein LOC100248303 [Vitis vinifera];; (*TAIR) AT3G53540.1 (e_value=3e-43) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805-19850670 REVERSE LENGTH=924;; (*ITAG) Solyc09g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:521012-526426 transcript_region:SL2.40ch09:521012..526426+ functional_description:"Os03g0819700 protein (Fragment) (AHRD V1 *-*- Q0DMA9_ORYSJ)"; NbS00003244g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|357; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=7e-112) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*SWP) sp|O22042|M3K3_ARATH (e_value=2e-41) Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana GN=ANP3 PE=1 SV=1;; (*TAIR) AT4G36950.1 (e_value=2e-105) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc02g090980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47010791-47011858 transcript_region:SL2.40ch02:47010791..47011858+ go_terms:GO:0042803 functional_description:"Protein serine/threonine kinase (AHRD V1 ***- D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00003894g0016.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|218; (*GB) gi|57013999|ref|YP_173470.1| (e_value=1e-102) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=5e-85) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=6e-87) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=1e-104) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00003894g0004.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|127; (*GB) gi|225458988|ref|XP_002285581.1| (e_value=1e-83) PREDICTED: ubiquitin-fold modifier-conjugating enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SXC8|UFC1_ARATH (e_value=4e-84) Ubiquitin-fold modifier-conjugating enzyme 1 OS=Arabidopsis thaliana GN=At1g27530 PE=2 SV=1;; (*TAIR) AT1G27530.1 (e_value=3e-85) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr1:9562761-9563887 REVERSE LENGTH=174;; (*ITAG) Solyc04g076890.2.1 (e_value=6e-90) genomic_reference:SL2.40ch04 gene_region:59417369-59419011 transcript_region:SL2.40ch04:59417369..59419011- go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier-conjugating enzyme 1 (AHRD V1 ***- UFC1_ARATH); contains Interpro domain(s) IPR014806 Ubiquitin-fold modifier-conjugating enzyme 1 "; GO:0005515 NbS00003894g0008.1 protein AED:0.77 eAED:0.86 QI:0|0|0|1|1|1|2|0|88 NbS00003894g0001.1 protein AED:0.14 eAED:0.87 QI:62|0|0.5|1|0|0.5|2|188|102 NbS00003894g0015.1 protein AED:0.39 eAED:0.46 QI:0|0|0|1|0|0|3|0|139; (*GB) gi|57013999|ref|YP_173470.1| (e_value=3e-45) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=1e-26) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=7e-31) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00003894g0014.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|63; (*GB) gi|357436015|ref|XP_003588283.1| (e_value=1e-16) Cytochrome c biogenesis [Medicago truncatula];; (*SWP) sp|P93286|CCMF_ARATH (e_value=4e-16) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=2e-18) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=1e-18) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00026950g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.78|0.8|0.9|0.94|0.95|20|276|850; (*GB) gi|224057898|ref|XP_002299379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2KIZ8|MCM6_BOVIN (e_value=0.0) DNA replication licensing factor MCM6 OS=Bos taurus GN=MCM6 PE=2 SV=1;; (*TAIR) AT5G44635.1 (e_value=0.0) | Symbols: MCM6 | minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831;; (*ITAG) Solyc02g082180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40461974-40467518 transcript_region:SL2.40ch02:40461974..40467518+ go_terms:GO:0042802 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2TWS7_ASPOR); contains Interpro domain(s) IPR008049 MCM protein 6 "; GO:0042802 NbS00018857g0003.1 protein AED:0.13 eAED:0.13 QI:237|1|1|1|0.71|0.75|8|143|470; (*GB) gi|27597239|dbj|BAC55157.1| (e_value=0.0) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SDZ9|PPAF2_IPOBA (e_value=0.0) Purple acid phosphatase 2 OS=Ipomoea batatas GN=PAP2 PE=1 SV=1;; (*TAIR) AT2G16430.2 (e_value=0.0) | Symbols: PAP10, ATPAP10 | purple acid phosphatase 10 | chr2:7120502-7122772 REVERSE LENGTH=468;; (*ITAG) Solyc01g110060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88618467-88622227 transcript_region:SL2.40ch01:88618467..88622227- go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** Q84KZ2_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00002340g0005.1 protein AED:0.07 eAED:0.07 QI:26|1|1|1|0.75|0.6|5|142|515; (*GB) gi|359494406|ref|XP_003634774.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: secologanin synthase-like [Vitis vinifera];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g061980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62064805-62071501 transcript_region:SL2.40ch07:62064805..62071501+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00046138g0004.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|0.5|0.33|3|0|333; (*GB) gi|225440183|ref|XP_002278250.1| (e_value=8e-40) PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera];; (*TAIR) AT3G12410.1 (e_value=3e-18) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc08g007350.1.1 (e_value=2e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00002626g0020.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|6|53|837; (*GB) gi|225433189|ref|XP_002281630.1| (e_value=0.0) PREDICTED: kinesin-like protein KIF11-like [Vitis vinifera];; (*SWP) sp|P28025|KI11B_XENLA (e_value=5e-35) Kinesin-like protein KIF11-B OS=Xenopus laevis GN=kif11-b PE=1 SV=2;; (*TAIR) AT4G14330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8244228-8247286 FORWARD LENGTH=869;; (*ITAG) Solyc03g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:446878-450640 transcript_region:SL2.40ch03:446878..450640- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- O23291_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00002626g0024.1 protein AED:0.07 eAED:0.07 QI:181|0.5|0.4|1|0.75|0.8|5|0|1013; (*GB) gi|224110616|ref|XP_002315579.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33420.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:14158782-14162304 FORWARD LENGTH=1039;; (*ITAG) Solyc03g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:451395-456304 transcript_region:SL2.40ch03:451395..456304- functional_description:"Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00002626g0018.1 protein AED:0.21 eAED:0.26 QI:240|0|0|0.87|0.28|0.25|8|0|1443; (*GB) gi|357449695|ref|XP_003595124.1| (e_value=2e-63) Disease resistance RPP8-like protein [Medicago truncatula];; (*SWP) sp|Q9FJK8|RP8L4_ARATH (e_value=1e-49) Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1;; (*TAIR) AT5G48620.1 (e_value=9e-51) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc03g005650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:465276-467974 transcript_region:SL2.40ch03:465276..467974- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00002626g0021.1 protein AED:0.26 eAED:0.30 QI:0|0|0|1|0|0|2|0|263; (*ITAG) Solyc03g005640.1.1 (e_value=9e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:457646-459016 transcript_region:SL2.40ch03:457646..459016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00014212g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|87; (*ITAG) Solyc10g012110.1.1 (e_value=5e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:4440329-4440950 transcript_region:SL2.40ch10:4440329..4440950- go_terms:GO:0005516 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A9NKV1_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516 NbS00014212g0006.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0.66|0.5|4|0|145; (*ITAG) Solyc02g044000.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:23812712-23818954 transcript_region:SL2.40ch02:23812712..23818954- functional_description:"ABC transporter C family member 14 (AHRD V1 *-*- AB14C_ARATH); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00014212g0008.1 protein AED:0.52 eAED:0.52 QI:0|0.25|0.2|0.4|1|1|5|161|246 NbS00014212g0010.1 protein AED:0.26 eAED:0.41 QI:0|0.4|0.16|0.83|0.4|0.33|6|0|233; (*GB) gi|18057100|gb|AAL58123.1|AC092697_11 (e_value=8e-41) hypothetical protein [Oryza sativa Japonica Group];; (*TAIR) AT4G23470.3 (e_value=4e-41) | Symbols: | PLAC8 family protein | chr4:12249289-12251079 FORWARD LENGTH=233;; (*ITAG) Solyc10g012080.2.1 (e_value=6e-45) genomic_reference:SL2.40ch10 gene_region:4409840-4412640 transcript_region:SL2.40ch10:4409840..4412640- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbC26301229g0003.1 protein AED:0.56 eAED:0.56 QI:234|1|0.33|1|1|1|3|0|23 NbS00015374g0004.1 protein AED:0.22 eAED:0.22 QI:55|0.5|0|0.66|0.5|0.33|3|98|22 NbS00015374g0001.1 protein AED:0.11 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|433; (*ITAG) Solyc11g039800.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004497g0007.1 protein AED:0.19 eAED:0.24 QI:0|0.25|0.2|0.8|0.75|0.8|5|0|240; (*GB) gi|358346689|ref|XP_003637398.1| (e_value=4e-121) RING finger protein [Medicago truncatula];; (*TAIR) AT3G47160.1 (e_value=5e-94) | Symbols: | RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245;; (*ITAG) Solyc10g009020.2.1 (e_value=4e-138) genomic_reference:SL2.40ch10 gene_region:3049888-3053583 transcript_region:SL2.40ch10:3049888..3053583+ go_terms:GO:0008270 functional_description:"Ring finger protein 141 (AHRD V1 *-*- Q28I63_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004497g0008.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.66|0.5|0.33|3|0|223; (*GB) gi|89280673|ref|YP_514890.1| (e_value=1e-37) ribosomal protein S3 [Solanum lycopersicum];; (*SWP) sp|Q2MI62|RR3_SOLLC (e_value=3e-39) 30S ribosomal protein S3, chloroplastic OS=Solanum lycopersicum GN=rps3 PE=3 SV=1;; (*ITAG) ATCG00800.1 (e_value=2e-39) | Symbols: | structural constituent of ribosome | chrC:82826-83482 REVERSE LENGTH=218;; (*ITAG) Solyc01g007610.2.1 (e_value=2e-30) genomic_reference:SL2.40ch01 gene_region:1879619-1881527 transcript_region:SL2.40ch01:1879619..1881527- go_terms:GO:0005840,GO:0015934,GO:0015935,GO:0003723 functional_description:"30S ribosomal protein S3 chloroplastic (AHRD V1 ***- D3WBD9_9BORA); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial "; GO:0005840,GO:0015934,GO:0015935,GO:0003723 NbS00047963g0002.1 protein AED:0.22 eAED:0.45 QI:52|0.57|0.37|1|0|0|8|0|149; (*GB) gi|40287534|gb|AAR83881.1| (e_value=1e-66) glutamine synthetase gln1-3 [Capsicum annuum];; (*SWP) sp|P12424|GLNA_NICPL (e_value=3e-66) Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT1G66200.3 (e_value=7e-65) | Symbols: GSR2, GLN1;2 | glutamine synthase clone F11 | chr1:24655520-24657520 REVERSE LENGTH=365;; (*ITAG) Solyc11g011380.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4456053-4460206 transcript_region:SL2.40ch11:4456053..4460206+ go_terms:GO:0006807,GO:0003824 functional_description:"Glutamine synthetase (AHRD V1 ***- Q42950_TOBAC); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0006807,GO:0003824 NbS00028772g0004.1 protein AED:0.28 eAED:0.28 QI:28|1|0.90|1|0.7|0.72|11|0|345; (*GB) gi|296082387|emb|CBI21392.3| (e_value=9e-174) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G34090.1 (e_value=6e-144) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16328051-16330110 REVERSE LENGTH=330;; (*ITAG) Solyc02g093170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48685606-48688686 transcript_region:SL2.40ch02:48685606..48688686- functional_description:"Cyclin delta-3 (AHRD V1 **-- Q94JY0_ARATH)"; NbS00028772g0002.1 protein AED:0.06 eAED:0.06 QI:412|1|0.87|1|0.42|0.37|8|0|1076; (*GB) gi|147791289|emb|CAN65607.1| (e_value=0.0) hypothetical protein VITISV_042269 [Vitis vinifera];; (*SWP) sp|Q9SLN1|FPP7_ARATH (e_value=1e-130) Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=2 SV=2;; (*TAIR) AT2G23360.1 (e_value=8e-132) | Symbols: | Plant protein of unknown function (DUF869) | chr2:9949420-9952727 FORWARD LENGTH=898;; (*ITAG) Solyc02g093160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48680222-48685593 transcript_region:SL2.40ch02:48680222..48685593+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00021053g0001.1 protein AED:0.36 eAED:0.44 QI:0|0|0|0.66|1|1|3|0|144; (*GB) gi|356543197|ref|XP_003540049.1| (e_value=2e-67) PREDICTED: uncharacterized protein LOC100790931 [Glycine max];; (*TAIR) AT5G54530.1 (e_value=2e-61) | Symbols: | Protein of unknown function, DUF538 | chr5:22152781-22154201 FORWARD LENGTH=161;; (*ITAG) Solyc07g063860.2.1 (e_value=5e-86) genomic_reference:SL2.40ch07 gene_region:63449867-63450950 transcript_region:SL2.40ch07:63449867..63450950+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbC24015739g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|0|1|0|105; (*GB) gi|224107249|ref|XP_002314421.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4J2|MPK16_ARATH (e_value=8e-56) Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2;; (*TAIR) AT5G19010.1 (e_value=6e-57) | Symbols: MPK16 | mitogen-activated protein kinase 16 | chr5:6345096-6347676 REVERSE LENGTH=567;; (*ITAG) Solyc01g080240.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:71971471-71978931 transcript_region:SL2.40ch01:71971471..71978931+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 16 (AHRD V1 **** D7LYJ6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00013734g0001.1 protein AED:0.20 eAED:0.21 QI:45|0.6|0.83|1|0.6|0.5|6|965|186; (*GB) gi|225463552|ref|XP_002267156.1| (e_value=8e-84) PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera];; (*SWP) sp|Q8W206|CSN6A_ARATH (e_value=3e-80) COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2;; (*TAIR) AT5G56280.1 (e_value=2e-81) | Symbols: CSN6A | COP9 signalosome subunit 6A | chr5:22783617-22785530 REVERSE LENGTH=317;; (*ITAG) Solyc10g005660.2.1 (e_value=6e-86) genomic_reference:SL2.40ch10 gene_region:536061-541079 transcript_region:SL2.40ch10:536061..541079+ go_terms:GO:0005515 functional_description:"COP9 signalosome subunit 6 (AHRD V1 ***- Q2A0N7_ORYSA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00013734g0008.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|335|204; (*GB) gi|255576633|ref|XP_002529206.1| (e_value=3e-101) Regulator of ribonuclease activity A, putative [Ricinus communis];; (*SWP) sp|Q9FH13|RRAA3_ARATH (e_value=4e-96) Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1;; (*TAIR) AT5G56260.1 (e_value=3e-97) | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:22775549-22776049 REVERSE LENGTH=166;; (*ITAG) Solyc04g008280.2.1 (e_value=7e-85) genomic_reference:SL2.40ch04 gene_region:1954623-1957620 transcript_region:SL2.40ch04:1954623..1957620+ go_terms:GO:0008757 functional_description:"Regulator of ribonuclease activity A (AHRD V1 ***- B6T0A4_MAIZE); contains Interpro domain(s) IPR010203 Ribonuclease E inhibitor RraA "; GO:0008757 NbS00047693g0003.1 protein AED:0.01 eAED:0.03 QI:0|1|0|1|1|1|2|0|387; (*GB) gi|68131790|gb|AAY85179.1| (e_value=2e-50) fiber expressed protein [Gossypium hirsutum];; (*TAIR) AT1G61260.1 (e_value=3e-30) | Symbols: | Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344;; (*ITAG) Solyc02g079010.2.1 (e_value=7e-79) genomic_reference:SL2.40ch02 gene_region:38213825-38215181 transcript_region:SL2.40ch02:38213825..38215181+ functional_description:"Cotton fiber expressed protein 1 (AHRD V1 ***- O81373_GOSHI); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00004072g0004.1 protein AED:0.19 eAED:0.19 QI:162|0.90|0.83|1|0.90|0.83|12|466|362; (*GB) gi|224075619|ref|XP_002304710.1| (e_value=2e-107) predicted protein [Populus trichocarpa];; (*TAIR) AT3G24160.1 (e_value=4e-75) | Symbols: PMP | putative type 1 membrane protein | chr3:8726241-8729023 FORWARD LENGTH=364;; (*ITAG) Solyc09g091820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66379415-66385414 transcript_region:SL2.40ch09:66379415..66385414+ functional_description:"AT3g24160/MUJ8_16 (AHRD V1 ***- Q9ZSJ7_ARATH)"; NbS00047300g0006.1 protein AED:0.67 eAED:0.67 QI:81|0.33|0|0.75|0.66|0.5|4|0|160; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=6e-38) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00055828g0006.1 protein AED:0.34 eAED:0.39 QI:0|0.33|0.25|1|1|1|4|0|227; (*GB) gi|225432171|ref|XP_002267959.1| (e_value=1e-123) PREDICTED: [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q00972|BCKD_RAT (e_value=1e-29) [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2;; (*TAIR) AT3G06483.1 (e_value=3e-115) | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366;; (*ITAG) Solyc01g057210.2.1 (e_value=8e-136) genomic_reference:SL2.40ch01 gene_region:52729784-52733591 transcript_region:SL2.40ch01:52729784..52733591+ go_terms:GO:0004740 functional_description:"Pyruvate dehydrogenase kinase (AHRD V1 **** Q700B0_CICAR); contains Interpro domain(s) IPR018955 Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial "; GO:0004740 NbS00022214g0011.1 protein AED:0.30 eAED:0.31 QI:416|0|0.33|1|1|1|3|0|876; (*GB) gi|255586545|ref|XP_002533909.1| (e_value=1e-55) hypothetical protein RCOM_0237030 [Ricinus communis];; (*TAIR) AT2G46380.1 (e_value=8e-18) | Symbols: | Protein of unknown function (DUF3133) | chr2:19039377-19042171 FORWARD LENGTH=768;; (*ITAG) Solyc01g095590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00022214g0002.1 protein AED:0.40 eAED:0.44 QI:0|0.25|0|1|1|1|5|0|529; (*GB) gi|359475162|ref|XP_003631603.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g18840-like [Vitis vinifera];; (*SWP) sp|Q9LHN5|PP242_ARATH (e_value=4e-144) Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1;; (*TAIR) AT3G18840.2 (e_value=3e-145) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:6496198-6498234 FORWARD LENGTH=678;; (*ITAG) Solyc01g095600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78575599-78578845 transcript_region:SL2.40ch01:78575599..78578845+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00022214g0017.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|0.66|1|4|0|273; (*GB) gi|307136361|gb|ADN34175.1| (e_value=1e-97) hypothetical protein [Cucumis melo subsp. melo];; (*TAIR) AT3G61670.1 (e_value=5e-78) | Symbols: | Protein of unknown function (DUF3133) | chr3:22819052-22821870 FORWARD LENGTH=790;; (*ITAG) Solyc01g095590.2.1 (e_value=3e-137) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00022214g0015.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0.5|2|0|116; (*ITAG) Solyc01g095590.2.1 (e_value=6e-40) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00022214g0014.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|0|0.5|2|0|79; (*ITAG) Solyc01g095590.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:78569250-78574582 transcript_region:SL2.40ch01:78569250..78574582+ functional_description:"Extra-large G-protein-like (AHRD V1 ***- Q6K2T0_ORYSJ)"; NbS00042577g0007.1 protein AED:0.06 eAED:0.06 QI:123|1|1|1|1|1|4|404|184; (*GB) gi|225442793|ref|XP_002285244.1| (e_value=1e-101) PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit isoform 1 [Vitis vinifera];; (*SWP) sp|O14046|VATO_SCHPO (e_value=6e-52) Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=2 SV=1;; (*TAIR) AT4G32530.1 (e_value=4e-98) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr4:15693399-15694958 REVERSE LENGTH=180;; (*ITAG) Solyc08g067480.2.1 (e_value=5e-111) genomic_reference:SL2.40ch08 gene_region:53706433-53711129 transcript_region:SL2.40ch08:53706433..53711129- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00042577g0006.1 protein AED:0.34 eAED:0.34 QI:0|1|0.75|1|1|1|4|165|427; (*GB) gi|225430163|ref|XP_002282242.1| (e_value=0.0) PREDICTED: 6-hydroxynicotinate 3-monooxygenase [Vitis vinifera];; (*TAIR) AT5G11330.1 (e_value=1e-168) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:3617342-3618861 REVERSE LENGTH=408;; (*ITAG) Solyc08g067470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53702695-53705401 transcript_region:SL2.40ch08:53702695..53705401+ go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding (AHRD V1 ***- Q39G60_BURS3); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00001225g0004.1 protein AED:0.17 eAED:0.17 QI:145|0.75|0.8|1|0.75|1|5|291|196; (*GB) gi|385653681|emb|CBL94669.1| (e_value=9e-110) eukaryotic translation initiation factor 4E, partial [Capsicum chinense];; (*SWP) sp|O81481|IF4E1_MAIZE (e_value=5e-91) Eukaryotic translation initiation factor 4E-1 OS=Zea mays PE=2 SV=1;; (*TAIR) AT4G18040.1 (e_value=2e-87) | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryotic translation initiation factor 4E | chr4:10016724-10018151 REVERSE LENGTH=235;; (*ITAG) Solyc03g005870.2.1 (e_value=3e-111) genomic_reference:SL2.40ch03 gene_region:590058-593520 transcript_region:SL2.40ch03:590058..593520+ go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- Q199B8_SOLLC); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00026127g0012.1 protein AED:0.10 eAED:0.09 QI:0|0.55|0.4|1|1|1|10|1047|668; (*GB) gi|297745690|emb|CBI40975.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=4e-18) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=3e-19) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc08g029090.2.1 (e_value=3e-70) genomic_reference:SL2.40ch08 gene_region:22654683-22657391 transcript_region:SL2.40ch08:22654683..22657391+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g18960 (AHRD V1 *-*- Y3896_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00026127g0018.1 protein AED:0.28 eAED:0.28 QI:202|1|0.5|1|1|1|2|0|128; (*GB) gi|255646760|gb|ACU23853.1| (e_value=7e-59) unknown [Glycine max];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=9e-43) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT2G17040.1 (e_value=2e-57) | Symbols: anac036, NAC036 | NAC domain containing protein 36 | chr2:7407123-7408120 FORWARD LENGTH=276;; (*ITAG) Solyc02g061780.2.1 (e_value=7e-78) genomic_reference:SL2.40ch02 gene_region:27874513-27876587 transcript_region:SL2.40ch02:27874513..27876587- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM35_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00026127g0013.1 protein AED:0.33 eAED:0.33 QI:181|0.8|0.83|1|0|0.16|6|344|209; (*GB) gi|359496350|ref|XP_002270981.2| (e_value=2e-76) PREDICTED: probable S-acyltransferase At3g51390 [Vitis vinifera];; (*SWP) sp|Q7XA86|ZDH11_ARATH (e_value=1e-45) Probable S-acyltransferase At3g51390 OS=Arabidopsis thaliana GN=At3g51390 PE=2 SV=1;; (*TAIR) AT3G51390.1 (e_value=9e-47) | Symbols: | DHHC-type zinc finger family protein | chr3:19075718-19077966 FORWARD LENGTH=340;; (*ITAG) Solyc02g061810.2.1 (e_value=8e-94) genomic_reference:SL2.40ch02 gene_region:27893905-27903308 transcript_region:SL2.40ch02:27893905..27903308- go_terms:GO:0008270 functional_description:"Palmitoyltransferase (AHRD V1 *-*- A6ZY88_YEAS7); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00026127g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|403; (*GB) gi|225433742|ref|XP_002267271.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263505 [Vitis vinifera];; (*TAIR) AT5G48040.1 (e_value=4e-162) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:19470461-19471729 FORWARD LENGTH=422;; (*ITAG) Solyc11g019970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9879980-9884297 transcript_region:SL2.40ch11:9879980..9884297- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00026127g0015.1 protein AED:0.39 eAED:0.39 QI:64|0.5|0.66|1|1|1|3|304|129; (*GB) gi|225438387|ref|XP_002275126.1| (e_value=1e-42) PREDICTED: RNA polymerase II transcriptional coactivator KIWI [Vitis vinifera];; (*SWP) sp|O65154|KIWI_ARATH (e_value=3e-36) RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1;; (*TAIR) AT5G09250.1 (e_value=2e-37) | Symbols: KIWI | ssDNA-binding transcriptional regulator | chr5:2875421-2876368 REVERSE LENGTH=107;; (*ITAG) Solyc02g061790.2.1 (e_value=3e-63) genomic_reference:SL2.40ch02 gene_region:27884732-27888000 transcript_region:SL2.40ch02:27884732..27888000+ go_terms:GO:0003713,GO:0003697 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 **** C1BJV8_OSMMO); contains Interpro domain(s) IPR003173 Transcriptional coactivator p15 "; GO:0003713,GO:0003697 NbS00013286g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.9|1|0.77|0.9|10|493|392; (*GB) gi|255536979|ref|XP_002509556.1| (e_value=0.0) 26S proteasome regulatory subunit S3, putative [Ricinus communis];; (*SWP) sp|Q8W575|CSN3_ARATH (e_value=1e-158) COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2;; (*TAIR) AT5G14250.1 (e_value=1e-159) | Symbols: COP13, CSN3, FUS11 | Proteasome component (PCI) domain protein | chr5:4597970-4600561 FORWARD LENGTH=429;; (*ITAG) Solyc02g093920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49186630-49191575 transcript_region:SL2.40ch02:49186630..49191575- go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 3 (AHRD V1 ***- B6TEU1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00013286g0012.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|0.66|0|0.33|3|0|173 NbS00013286g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|3|0|731; (*GB) gi|224055775|ref|XP_002298647.1| (e_value=0.0) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q8S4W7|GAI1_VITVI (e_value=6e-91) DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1;; (*TAIR) AT1G66350.1 (e_value=5e-87) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc02g094340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49472579-49475075 transcript_region:SL2.40ch02:49472579..49475075+ functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 *--- A1YWW2_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00013286g0013.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.42|1|0.83|0.85|7|174|397; (*GB) gi|296090252|emb|CBI40071.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LK31|Y3272_ARATH (e_value=6e-166) Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1;; (*TAIR) AT1G51540.1 (e_value=2e-176) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115702-19117381 FORWARD LENGTH=415;; (*ITAG) Solyc02g093910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49183590-49186451 transcript_region:SL2.40ch02:49183590..49186451+ go_terms:GO:0005515 functional_description:"Kelch repeat-containing protein-like (AHRD V1 ***- Q6ZK44_ORYSJ); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00010955g0010.1 protein AED:0.03 eAED:0.03 QI:369|1|1|1|0.75|1|5|756|169; (*GB) gi|359487530|ref|XP_003633609.1| (e_value=6e-58) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q5FWN8|DNJ6A_XENLA (e_value=1e-18) DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-a PE=2 SV=1;; (*TAIR) AT1G56300.1 (e_value=2e-48) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:21079022-21080168 REVERSE LENGTH=156;; (*ITAG) Solyc01g100230.2.1 (e_value=1e-98) genomic_reference:SL2.40ch01 gene_region:82041782-82043997 transcript_region:SL2.40ch01:82041782..82043997- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6U761_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00010955g0011.1 protein AED:0.19 eAED:0.19 QI:324|0.7|0.81|1|0.7|0.63|11|389|521; (*GB) gi|224123924|ref|XP_002330243.1| (e_value=2e-130) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25800.2 (e_value=2e-91) | Symbols: | Calmodulin-binding protein | chr4:13125224-13127765 FORWARD LENGTH=601;; (*ITAG) Solyc01g100240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82072030-82076462 transcript_region:SL2.40ch01:82072030..82076462- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7L2U6_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00012225g0016.1 protein AED:0.07 eAED:0.07 QI:537|0.81|0.83|1|0.81|0.83|12|269|881; (*GB) gi|359482516|ref|XP_002275886.2| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=6e-172) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT5G56890.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23010801-23015559 REVERSE LENGTH=1113;; (*ITAG) Solyc03g121610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63753788-63759520 transcript_region:SL2.40ch03:63753788..63759520- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00012225g0017.1 protein AED:0.05 eAED:0.05 QI:737|0.83|0.85|1|0.66|0.71|7|328|589; (*GB) gi|297743084|emb|CBI35951.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S746|HTH_ARATH (e_value=0.0) Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1;; (*TAIR) AT1G72970.1 (e_value=0.0) | Symbols: HTH, EDA17 | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27452872-27455706 FORWARD LENGTH=594;; (*ITAG) Solyc06g062600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35912143-35916844 transcript_region:SL2.40ch06:35912143..35916844+ go_terms:GO:0046593 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0046593 NbS00012225g0018.1 protein AED:0.10 eAED:0.10 QI:391|0.95|0.95|1|0.90|0.86|23|553|808; (*GB) gi|297743083|emb|CBI35950.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93042|RHD3_ARATH (e_value=0.0) Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1;; (*TAIR) AT3G13870.1 (e_value=0.0) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802;; (*ITAG) Solyc03g121590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63727316-63737352 transcript_region:SL2.40ch03:63727316..63737352+ go_terms:GO:0031177 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0031177 NbS00012225g0110.1 protein AED:0.05 eAED:0.05 QI:231|1|0.85|1|1|1|7|617|639 NbS00012225g0113.1 protein AED:0.13 eAED:0.13 QI:199|0.70|0.72|0.88|0.70|0.83|18|318|519 NbS00012225g0111.1 protein AED:0.13 eAED:0.14 QI:0|0.75|0.8|1|1|1|5|223|348 NbS00012225g0112.1 protein AED:0.17 eAED:0.17 QI:722|0.94|0.94|1|1|1|19|559|828 NbS00056949g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|224102439|ref|XP_002312677.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94C27|FB84_ARATH (e_value=4e-22) F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1;; (*TAIR) AT1G70590.1 (e_value=3e-23) | Symbols: | F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351;; (*ITAG) Solyc05g013410.2.1 (e_value=2e-30) genomic_reference:SL2.40ch05 gene_region:6480260-6484488 transcript_region:SL2.40ch05:6480260..6484488+ go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *-*- A0L961_MAGSM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00056949g0004.1 protein AED:0.11 eAED:0.11 QI:310|1|1|1|1|1|6|980|151; (*GB) gi|255542502|ref|XP_002512314.1| (e_value=2e-77) Histidine-containing phosphotransfer protein, putative [Ricinus communis];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=1e-59) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=1e-60) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g098400.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:80683099-80684846 transcript_region:SL2.40ch01:80683099..80684846- go_terms:GO:0009927 functional_description:"Histidine phosphotransfer protein (AHRD V1 **** B9I823_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00041215g0001.1 protein AED:0.21 eAED:0.21 QI:278|0.92|0.85|1|1|1|14|0|799; (*GB) gi|224116526|ref|XP_002317323.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7G188|FIMB1_ARATH (e_value=0.0) Fimbrin-1 OS=Arabidopsis thaliana GN=FIM1 PE=1 SV=2;; (*TAIR) AT4G26700.2 (e_value=0.0) | Symbols: ATFIM1, FIM1 | fimbrin 1 | chr4:13463760-13467426 FORWARD LENGTH=687;; (*ITAG) Solyc07g065080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64209707-64216564 transcript_region:SL2.40ch07:64209707..64216564- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00008448g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|0.6|1|1|1|5|0|327; (*GB) gi|225463960|ref|XP_002270792.1| (e_value=1e-83) PREDICTED: uncharacterized protein LOC100261576 [Vitis vinifera];; (*TAIR) AT3G04590.2 (e_value=3e-59) | Symbols: | AT hook motif DNA-binding family protein | chr3:1239245-1241603 REVERSE LENGTH=411;; (*ITAG) Solyc11g006190.1.1 (e_value=2e-131) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:934195-941588 transcript_region:SL2.40ch11:934195..941588- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 14 (AHRD V1 ***- Q9SR16_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00007005g0011.1 protein AED:0.19 eAED:0.19 QI:257|1|1|1|0.33|0.25|4|518|68; (*GB) gi|359495921|ref|XP_003635115.1| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100854245 [Vitis vinifera];; (*TAIR) AT3G07568.1 (e_value=4e-18) | Symbols: | unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2416494-2417752 REVERSE LENGTH=68;; (*ITAG) Solyc08g014020.2.1 (e_value=4e-28) genomic_reference:SL2.40ch08 gene_region:3514271-3519633 transcript_region:SL2.40ch08:3514271..3519633- functional_description:"MLP3.2 protein (AHRD V1 ***- Q9SSF3_ARATH)"; NbS00007005g0012.1 protein AED:0.29 eAED:0.29 QI:143|1|1|1|0.6|0.83|6|323|294; (*GB) gi|225447131|ref|XP_002274696.1| (e_value=7e-161) PREDICTED: uncharacterized protein LOC100244748 [Vitis vinifera];; (*TAIR) AT2G32980.1 (e_value=2e-144) | Symbols: | unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). | chr2:13997569-13999715 REVERSE LENGTH=296;; (*ITAG) Solyc08g013990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3397948-3408923 transcript_region:SL2.40ch08:3397948..3408923- functional_description:"HAUS augmin-like complex subunit 2 (AHRD V1 *-*- HAUS2_HUMAN)"; NbS00007005g0014.1 protein AED:0.03 eAED:0.03 QI:437|1|1|1|0.83|1|7|440|234; (*GB) gi|225434010|ref|XP_002272798.1| (e_value=8e-65) PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera];; (*TAIR) AT3G07565.3 (e_value=6e-62) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=259;; (*ITAG) Solyc08g013980.2.1 (e_value=7e-129) genomic_reference:SL2.40ch08 gene_region:3394296-3397841 transcript_region:SL2.40ch08:3394296..3397841+ functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *--- Q9SRQ9_ARATH)"; NbS00007005g0013.1 protein AED:0.19 eAED:0.20 QI:272|0.8|0.81|1|0.4|0.45|11|433|542; (*GB) gi|296081345|emb|CBI17691.3| (e_value=2e-167) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67550.1 (e_value=3e-51) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26946908-26949112 REVERSE LENGTH=509;; (*ITAG) Solyc08g014010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3508330-3513774 transcript_region:SL2.40ch08:3508330..3513774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001059g0005.1 protein AED:0.25 eAED:0.25 QI:263|0.85|0.75|1|0.85|0.87|8|0|739; (*GB) gi|225464503|ref|XP_002272091.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 33-like [Vitis vinifera];; (*SWP) sp|Q8GUH1|PUB33_ARATH (e_value=4e-164) U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2;; (*TAIR) AT2G45910.1 (e_value=3e-165) | Symbols: | U-box domain-containing protein kinase family protein | chr2:18894520-18898212 FORWARD LENGTH=834;; (*ITAG) Solyc03g025450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7242406-7250906 transcript_region:SL2.40ch03:7242406..7250906- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00003185g0004.1 protein AED:0.39 eAED:0.39 QI:167|1|1|1|0|0.5|2|364|268; (*GB) gi|388496142|gb|AFK36137.1| (e_value=3e-85) unknown [Lotus japonicus];; (*TAIR) AT1G56423.1 (e_value=2e-83) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21129075-21130558 FORWARD LENGTH=270;; (*ITAG) Solyc01g100480.2.1 (e_value=2e-132) genomic_reference:SL2.40ch01 gene_region:82248236-82253849 transcript_region:SL2.40ch01:82248236..82253849+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002367g0012.1 protein AED:0.13 eAED:0.15 QI:36|0.69|0.71|0.92|1|1|14|157|644; (*GB) gi|5822270|pdb|1QGN|A (e_value=0.0) Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum;; (*SWP) sp|P55217|METB_ARATH (e_value=0.0) Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3;; (*TAIR) AT3G01120.1 (e_value=0.0) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00002367g0011.1 protein AED:0.17 eAED:0.17 QI:239|1|1|1|1|1|3|148|415; (*GB) gi|20563|emb|CAA78386.1| (e_value=0.0) protein 1 [Petunia x hybrida];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=1e-67) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G15310.1 (e_value=2e-111) | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein 16 | chr5:4974894-4976106 FORWARD LENGTH=326;; (*ITAG) Solyc02g088190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44930481-44932830 transcript_region:SL2.40ch02:44930481..44932830+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R098_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002367g0009.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|359806636|ref|NP_001241021.1| (e_value=1e-20) uncharacterized protein LOC100792209 [Glycine max];; (*ITAG) Solyc02g067160.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:31932761-31939826 transcript_region:SL2.40ch02:31932761..31939826- functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00002367g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|78 NbS00002367g0016.1 protein AED:0.27 eAED:0.27 QI:1367|0.87|0.88|1|0.62|0.66|9|157|455; (*GB) gi|255549898|ref|XP_002516000.1| (e_value=3e-101) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9D8Z1|ASCC1_MOUSE (e_value=6e-20) Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1;; (*TAIR) AT3G16230.3 (e_value=9e-92) | Symbols: | Predicted eukaryotic LigT | chr3:5500991-5503303 FORWARD LENGTH=409;; (*ITAG) Solyc03g120480.2.1 (e_value=2e-114) genomic_reference:SL2.40ch03 gene_region:62916470-62924788 transcript_region:SL2.40ch03:62916470..62924788- go_terms:GO:0006265,GO:0005737,GO:0003723,GO:0005622 functional_description:"Activating signal cointegrator 1 complex subunit 1 (AHRD V1 *--- C3KHG7_ANOFI); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0006265,GO:0005737,GO:0003723,GO:0005622 NbS00002367g0008.1 protein AED:0.81 eAED:0.85 QI:0|0|0|0.5|1|1|4|0|96 NbS00002367g0017.1 protein AED:0.33 eAED:0.66 QI:0|0|0|1|0|0|2|0|59; (*SWP) sp|P49689|RS30_ARATH (e_value=2e-15) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=1e-16) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=1e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00013795g0001.1 protein AED:0.01 eAED:0.07 QI:0|0|0|1|1|1|2|0|474; (*GB) gi|224112943|ref|XP_002316340.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13620.1 (e_value=5e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4385385-4386373 REVERSE LENGTH=301;; (*ITAG) Solyc04g049860.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:43000816-43003126 transcript_region:SL2.40ch04:43000816..43003126- functional_description:"Unknown Protein (AHRD V1)"; NbS00013795g0005.1 protein AED:0.70 eAED:0.73 QI:0|0|0|1|1|1|2|0|84 NbS00059573g0001.1 protein AED:0.03 eAED:0.03 QI:329|1|1|1|0.8|0.66|6|614|293; (*GB) gi|83283975|gb|ABC01895.1| (e_value=9e-177) transporter-like protein [Solanum tuberosum];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=3e-36) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G75170.2 (e_value=4e-163) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc04g080290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62123183-62125819 transcript_region:SL2.40ch04:62123183..62125819+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00059573g0002.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|1|2|0|303; (*GB) gi|225458293|ref|XP_002282654.1| (e_value=1e-133) PREDICTED: uncharacterized protein At1g01500-like [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=2e-42) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G75180.3 (e_value=1e-105) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:28216150-28217911 REVERSE LENGTH=315;; (*ITAG) Solyc04g080300.2.1 (e_value=2e-168) genomic_reference:SL2.40ch04 gene_region:62125971-62129677 transcript_region:SL2.40ch04:62125971..62129677- functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00004687g0002.1 protein AED:0.25 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|224071656|ref|XP_002303550.1| (e_value=7e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|O64495|SDD1_ARATH (e_value=1e-22) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT5G51750.1 (e_value=8e-25) | Symbols: ATSBT1.3, SBT1.3 | subtilase 1.3 | chr5:21020266-21022608 FORWARD LENGTH=780;; (*ITAG) Solyc02g072330.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36179426-36181612 transcript_region:SL2.40ch02:36179426..36181612- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00004687g0019.1 protein AED:0.08 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|367; (*GB) gi|359485451|ref|XP_002276944.2| (e_value=2e-89) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=7e-43) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=5e-44) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc02g072400.1.1 (e_value=7e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00004687g0013.1 protein AED:0.28 eAED:0.28 QI:315|0.91|0.84|1|0.83|0.76|13|0|385; (*GB) gi|359483773|ref|XP_003633016.1| (e_value=0.0) PREDICTED: shaggy-related protein kinase eta-like [Vitis vinifera];; (*SWP) sp|Q39011|KSG7_ARATH (e_value=0.0) Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2;; (*TAIR) AT4G18710.1 (e_value=0.0) | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein kinase superfamily protein | chr4:10296474-10298913 FORWARD LENGTH=380;; (*ITAG) Solyc02g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36164733-36171575 transcript_region:SL2.40ch02:36164733..36171575+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00004687g0014.1 protein AED:0.24 eAED:0.30 QI:0|0.5|0.63|1|0.4|0.45|11|289|489; (*GB) gi|255562452|ref|XP_002522232.1| (e_value=1e-157) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|C0LGU5|Y5457_ARATH (e_value=9e-132) Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1;; (*TAIR) AT5G45780.1 (e_value=7e-133) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:18566946-18569625 REVERSE LENGTH=614;; (*ITAG) Solyc02g072310.2.1 (e_value=3e-165) genomic_reference:SL2.40ch02 gene_region:36173934-36178716 transcript_region:SL2.40ch02:36173934..36178716+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004687g0018.1 protein AED:0.29 eAED:0.49 QI:63|1|0|1|0|0.5|2|0|59; (*GB) gi|297735447|emb|CBI17887.3| (e_value=5e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g072400.1.1 (e_value=6e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00018343g0015.1 protein AED:0.08 eAED:0.08 QI:673|0.5|0.6|1|0.5|0.4|5|294|1004; (*GB) gi|224131750|ref|XP_002328099.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT2G27060.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11551288-11554577 FORWARD LENGTH=1020;; (*ITAG) Solyc09g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:752491-757062 transcript_region:SL2.40ch09:752491..757062- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018343g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|56542461|gb|AAV92895.1| (e_value=5e-87) Avr9/Cf-9 rapidly elicited protein 76, partial [Nicotiana tabacum];; (*TAIR) AT2G27080.2 (e_value=5e-77) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260;; (*ITAG) Solyc01g009160.2.1 (e_value=4e-110) genomic_reference:SL2.40ch01 gene_region:3172415-3173564 transcript_region:SL2.40ch01:3172415..3173564- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00018343g0016.1 protein AED:0.22 eAED:0.22 QI:0|1|0.6|1|0.75|1|5|0|800; (*GB) gi|255561286|ref|XP_002521654.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G27090.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr2:11567691-11570345 REVERSE LENGTH=743;; (*ITAG) Solyc09g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:743380-748421 transcript_region:SL2.40ch09:743380..748421+ functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00018110g0003.1 protein AED:0.26 eAED:0.26 QI:172|0.71|0.75|1|1|1|8|640|570; (*GB) gi|224081475|ref|XP_002306425.1| (e_value=3e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9NIF3|UBQL_DICDI (e_value=3e-53) Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1;; (*TAIR) AT2G17200.1 (e_value=2e-134) | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551;; (*ITAG) Solyc03g032160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8939357-8949528 transcript_region:SL2.40ch03:8939357..8949528- go_terms:GO:0019900 functional_description:"Ubiquilin-1 (AHRD V1 *--- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; GO:0019900 NbS00002929g0001.1 protein AED:0.31 eAED:0.31 QI:0|0.87|0.77|1|1|1|9|0|319; (*GB) gi|307135970|gb|ADN33829.1| (e_value=0.0) naphthoate synthase [Cucumis melo subsp. melo];; (*SWP) sp|Q8GYN9|MENB_ARATH (e_value=0.0) 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2;; (*TAIR) AT1G60550.1 (e_value=0.0) | Symbols: ECHID, DHNS | enoyl-CoA hydratase/isomerase D | chr1:22305988-22308092 REVERSE LENGTH=337;; (*ITAG) Solyc05g005180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:164806-168556 transcript_region:SL2.40ch05:164806..168556+ go_terms:GO:0008152,GO:0009234 functional_description:"Naphthoate synthase (AHRD V1 ***- A8I2W2_CHLRE); contains Interpro domain(s) IPR010198 Naphthoate synthase "; GO:0008152,GO:0009234 NbS00002929g0002.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|0|0|2|0|263 NbS00045659g0004.1 protein AED:0.41 eAED:0.71 QI:0|0|0|0.66|1|1|3|0|92; (*GB) gi|57013933|ref|YP_173406.1| (e_value=7e-22) hypothetical protein NitaMp062 [Nicotiana tabacum]; NbS00005698g0011.1 protein AED:0.14 eAED:0.17 QI:0|0.4|0.16|1|0.8|0.83|6|0|663; (*GB) gi|255543088|ref|XP_002512607.1| (e_value=2e-20) hypothetical protein RCOM_1437240 [Ricinus communis];; (*ITAG) Solyc04g050960.2.1 (e_value=9e-160) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00005698g0014.1 protein AED:0.03 eAED:0.03 QI:150|1|1|1|1|1|3|437|303; (*GB) gi|224089414|ref|XP_002308717.1| (e_value=2e-114) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q3E6P4|FB95_ARATH (e_value=6e-83) F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1;; (*TAIR) AT2G02240.1 (e_value=4e-84) | Symbols: MEE66 | F-box family protein | chr2:592359-593602 REVERSE LENGTH=320;; (*ITAG) Solyc04g050990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48423112-48425767 transcript_region:SL2.40ch04:48423112..48425767- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00005698g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|1|1|4|0|515; (*GB) gi|356524523|ref|XP_003530878.1| (e_value=5e-153) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=4e-151) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=3e-152) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc04g050970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48331995-48334528 transcript_region:SL2.40ch04:48331995..48334528- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 **** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00005698g0004.1 protein AED:0.42 eAED:0.59 QI:0|0|0|1|1|1|2|0|94; (*GB) gi|255684842|gb|ACU27910.1| (e_value=2e-21) actin [Populus nigra];; (*SWP) sp|Q96292|ACT2_ARATH (e_value=3e-21) Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1;; (*TAIR) AT3G18780.1 (e_value=1e-22) | Symbols: ACT2, DER1, LSR2, ENL2 | actin 2 | chr3:6475535-6476728 FORWARD LENGTH=371;; (*ITAG) Solyc01g104770.2.1 (e_value=4e-22) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00005698g0017.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|109; (*GB) gi|379319768|gb|AFC98748.1| (e_value=2e-32) actin, partial [Halocnemum strobilaceum];; (*SWP) sp|P93375|ACT7_TOBAC (e_value=2e-30) Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=3e-30) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc01g104770.2.1 (e_value=6e-30) genomic_reference:SL2.40ch01 gene_region:84897783-84900619 transcript_region:SL2.40ch01:84897783..84900619- go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q6F4H4_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00005698g0206.1 protein AED:0.34 eAED:0.34 QI:6|0.6|0.66|1|1|1|6|0|286 NbS00005698g0208.1 protein AED:0.50 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|198 NbS00005698g0212.1 protein AED:0.27 eAED:0.38 QI:0|0.62|0.33|1|0.75|0.66|9|0|647 NbS00017571g0004.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|75107093|sp|P82411.1|PSRP6_SPIOL (e_value=6e-17) RecName: Full=50S ribosomal protein 6, chloroplastic; AltName: Full=CL25; AltName: Full=Plastid-specific 50S ribosomal protein 6; Short=PSRP-6; Flags: Precursor;; (*SWP) sp|P82411|PSRP6_SPIOL (e_value=2e-18) 50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1;; (*TAIR) AT5G17870.1 (e_value=2e-18) | Symbols: PSRP6 | plastid-specific 50S ribosomal protein 6 | chr5:5907817-5908137 FORWARD LENGTH=106;; (*ITAG) Solyc04g077130.1.1 (e_value=5e-53) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:59671130-59671465 transcript_region:SL2.40ch04:59671130..59671465- functional_description:"50S ribosomal protein 6, chloroplastic (AHRD V1 ***- PSRP6_ARATH)"; NbS00017571g0015.1 protein AED:0.11 eAED:0.11 QI:103|1|1|1|1|1|4|3839|549; (*GB) gi|224063405|ref|XP_002301130.1| (e_value=1e-129) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=2e-50) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.3 (e_value=5e-52) | Symbols: AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615748 FORWARD LENGTH=570;; (*ITAG) Solyc04g077100.2.1 (e_value=6e-155) genomic_reference:SL2.40ch04 gene_region:59650175-59651874 transcript_region:SL2.40ch04:59650175..59651874+ go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q336N3_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00017571g0016.1 protein AED:0.28 eAED:0.29 QI:402|0.88|0.8|1|0.77|0.9|10|854|339; (*GB) gi|225458958|ref|XP_002285550.1| (e_value=5e-155) PREDICTED: inositol-tetrakisphosphate 1-kinase 2 [Vitis vinifera];; (*SWP) sp|Q9SUG3|ITPK2_ARATH (e_value=3e-147) Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2;; (*TAIR) AT4G08170.2 (e_value=2e-148) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr4:5163707-5167000 REVERSE LENGTH=353;; (*ITAG) Solyc04g077120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59664715-59670763 transcript_region:SL2.40ch04:59664715..59670763+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 3 (AHRD V1 **** B6TDJ5_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00017571g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|138 NbS00015906g0003.1 protein AED:0.03 eAED:0.03 QI:189|1|1|1|1|1|4|116|905; (*GB) gi|255542716|ref|XP_002512421.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9MA60|FH11_ARATH (e_value=0.0) Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1;; (*TAIR) AT3G05470.1 (e_value=0.0) | Symbols: | Actin-binding FH2 (formin homology 2) family protein | chr3:1579667-1582547 REVERSE LENGTH=884;; (*ITAG) Solyc01g099650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81593305-81596806 transcript_region:SL2.40ch01:81593305..81596806+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00057860g0001.1 protein AED:0.20 eAED:0.24 QI:0|0.28|0|1|1|1|8|0|751; (*GB) gi|302143445|emb|CBI22006.3| (e_value=2e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=3e-53) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=3e-54) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc06g006040.1.1 (e_value=3e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00050208g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|356571949|ref|XP_003554133.1| (e_value=3e-114) PREDICTED: uncharacterized protein At5g39865-like [Glycine max];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=5e-48) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT3G57070.1 (e_value=3e-80) | Symbols: | Glutaredoxin family protein | chr3:21124174-21125427 FORWARD LENGTH=417;; (*ITAG) Solyc10g079560.1.1 (e_value=3e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60395656-60396960 transcript_region:SL2.40ch10:60395656..60396960- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LH54_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00000781g0018.1 protein AED:0.06 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|482; (*GB) gi|255547590|ref|XP_002514852.1| (e_value=1e-120) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9FG77|WRKY2_ARATH (e_value=7e-84) Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1;; (*TAIR) AT5G56270.1 (e_value=5e-85) | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein 2 | chr5:22780816-22783137 FORWARD LENGTH=687;; (*ITAG) Solyc04g056360.2.1 (e_value=1e-137) genomic_reference:SL2.40ch04 gene_region:53281612-53283583 transcript_region:SL2.40ch04:53281612..53283583- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 78 (AHRD V1 *-** Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00000781g0003.1 protein AED:0.19 eAED:0.20 QI:614|1|0.5|1|0|0|2|0|138; (*GB) gi|224090805|ref|XP_002309089.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2V3H0|PP322_ARATH (e_value=4e-16) Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2;; (*TAIR) AT1G04590.1 (e_value=6e-53) | Symbols: | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:1258760-1261411 REVERSE LENGTH=381;; (*ITAG) Solyc04g056370.2.1 (e_value=2e-80) genomic_reference:SL2.40ch04 gene_region:53301563-53306177 transcript_region:SL2.40ch04:53301563..53306177- functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 *-*- PP332_ARATH)"; NbS00000781g0016.1 protein AED:0.27 eAED:0.27 QI:226|1|1|1|0.66|0.57|7|521|292; (*GB) gi|13603406|dbj|BAB40973.1| (e_value=0.0) isopentenyl diphosphate isomerase 1 [Nicotiana tabacum];; (*SWP) sp|O48965|IDI2_CAMAC (e_value=5e-158) Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1;; (*TAIR) AT5G16440.1 (e_value=2e-152) | Symbols: IPP1 | isopentenyl diphosphate isomerase 1 | chr5:5371765-5373575 FORWARD LENGTH=291;; (*ITAG) Solyc04g056390.2.1 (e_value=2e-176) genomic_reference:SL2.40ch04 gene_region:53311908-53315677 transcript_region:SL2.40ch04:53311908..53315677- go_terms:GO:0004452,GO:0042802 functional_description:"Isopentenyl-diphosphate delta-isomerase (AHRD V1 **** Q84RZ8_9GENT); contains Interpro domain(s) IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 "; GO:0004452,GO:0042802 NbS00000781g0019.1 protein AED:0.01 eAED:0.04 QI:0|1|0|1|1|1|2|0|429; (*GB) gi|225430975|ref|XP_002272148.1| (e_value=3e-124) PREDICTED: uncharacterized protein LOC100263320 [Vitis vinifera];; (*TAIR) AT5G16460.1 (e_value=8e-98) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr5:5377085-5378533 REVERSE LENGTH=368;; (*ITAG) Solyc04g056380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53308208-53312047 transcript_region:SL2.40ch04:53308208..53312047+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 **-- Q9FFD9_ARATH); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00053024g0001.1 protein AED:0.06 eAED:0.06 QI:324|1|0.75|1|1|1|4|0|414; (*GB) gi|225448952|ref|XP_002268818.1| (e_value=0.0) PREDICTED: probable pectate lyase 12 [Vitis vinifera];; (*SWP) sp|Q93Z04|PLY13_ARATH (e_value=0.0) Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1;; (*TAIR) AT5G04310.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:1203356-1207352 REVERSE LENGTH=518;; (*ITAG) Solyc03g071570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:41156587-41160750 transcript_region:SL2.40ch03:41156587..41160750- go_terms:GO:0016829 functional_description:"Pectate lyase-like protein (AHRD V1 **** Q6U6I9_BRANA); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00014722g0007.1 protein AED:0.05 eAED:0.05 QI:140|0.5|0.4|0.6|1|1|5|0|394; (*GB) gi|113205160|gb|ABI34275.1| (e_value=9e-80) hypothetical protein LES1_20t00015 [Solanum lycopersicum];; (*TAIR) AT5G62910.1 (e_value=3e-44) | Symbols: | RING/U-box superfamily protein | chr5:25250830-25252015 FORWARD LENGTH=327;; (*ITAG) Solyc03g113700.2.1 (e_value=1e-131) genomic_reference:SL2.40ch03 gene_region:57821433-57823256 transcript_region:SL2.40ch03:57821433..57823256+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00000095g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.93|0.94|1|0.81|0.76|17|59|671; (*GB) gi|224108599|ref|XP_002333368.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L831|NUDT3_ARATH (e_value=0.0) Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1;; (*TAIR) AT1G79690.1 (e_value=0.0) | Symbols: atnudt3, NUDT3 | nudix hydrolase homolog 3 | chr1:29985360-29990171 FORWARD LENGTH=772;; (*ITAG) Solyc08g075390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56687214-56708030 transcript_region:SL2.40ch08:56687214..56708030- go_terms:GO:0005515 functional_description:"Isopentenyl-diphosphate delta-isomerase family protein (AHRD V1 *--- B1KWZ7_CLOBM); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0005515 NbS00027806g0001.1 protein AED:0.12 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|113205244|gb|AAT39318.2| (e_value=8e-37) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00027806g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.8|0.8|0.25|0.4|5|2137|75 NbS00027806g0002.1 protein AED:0.20 eAED:0.51 QI:0|0|0|1|1|1|2|0|106; (*GB) gi|319992787|emb|CBJ55932.1| (e_value=5e-26) ethylene response factor 2.1 [Bupleurum kaoi];; (*SWP) sp|O80338|EF101_ARATH (e_value=3e-26) Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1;; (*TAIR) AT5G47220.1 (e_value=2e-27) | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive element binding factor 2 | chr5:19172023-19172754 REVERSE LENGTH=243;; (*ITAG) Solyc08g078180.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00001884g0004.1 protein AED:0.17 eAED:0.21 QI:675|0.37|0.33|1|0.12|0.33|9|0|357; (*GB) gi|359485471|ref|XP_002277992.2| (e_value=5e-60) PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Vitis vinifera];; (*SWP) sp|Q8H184|PT106_ARATH (e_value=4e-47) Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1;; (*TAIR) AT1G06470.2 (e_value=3e-48) | Symbols: | Nucleotide/sugar transporter family protein | chr1:1970726-1973540 FORWARD LENGTH=414;; (*ITAG) Solyc07g055700.2.1 (e_value=2e-95) genomic_reference:SL2.40ch07 gene_region:60959511-60969153 transcript_region:SL2.40ch07:60959511..60969153- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (Fragment) (AHRD V1 *--- Q5GMH1_MOUSE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00022770g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|447; (*GB) gi|1040729|emb|CAA60621.1| (e_value=0.0) delta-8 sphingolipid desaturase [Helianthus annuus];; (*SWP) sp|A4UVI1|FADS1_PAPAN (e_value=3e-41) Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00041168g0003.1 protein AED:0.16 eAED:0.16 QI:128|1|0.88|1|0.75|0.77|9|0|311; (*GB) gi|225440684|ref|XP_002274764.1| (e_value=2e-153) PREDICTED: thylakoid ADP,ATP carrier protein, chloroplastic [Vitis vinifera];; (*SWP) sp|O65023|EAAC_ARATH (e_value=9e-139) Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=2;; (*TAIR) AT3G51870.1 (e_value=7e-140) | Symbols: | Mitochondrial substrate carrier family protein | chr3:19243978-19246611 FORWARD LENGTH=381;; (*ITAG) Solyc09g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:183245-189258 transcript_region:SL2.40ch09:183245..189258- go_terms:GO:0005347,GO:0015228 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C6HT14_AJECH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005347,GO:0015228 NbS00024405g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.71|1|0.66|0.71|7|545|283; (*GB) gi|359475183|ref|XP_002282418.2| (e_value=8e-132) PREDICTED: O-acyltransferase WSD1-like [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=6e-30) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT1G72110.1 (e_value=3e-42) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr1:27129253-27131354 REVERSE LENGTH=479;; (*ITAG) Solyc01g107900.2.1 (e_value=4e-169) genomic_reference:SL2.40ch01 gene_region:87046163-87051415 transcript_region:SL2.40ch01:87046163..87051415- functional_description:"Acyltransferase WS/DGAT/MGAT family protein (AHRD V1 **-- A7NLM3_ROSCS); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00025997g0010.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|0|0|2|29|146; (*GB) gi|225444293|ref|XP_002263584.1| (e_value=3e-69) PREDICTED: uncharacterized protein LOC100250418 [Vitis vinifera];; (*TAIR) AT1G11915.1 (e_value=2e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4021830-4023084 FORWARD LENGTH=329;; (*ITAG) Solyc02g080900.2.1 (e_value=1e-79) genomic_reference:SL2.40ch02 gene_region:39586431-39587905 transcript_region:SL2.40ch02:39586431..39587905+ functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 **-- Q9FGR6_ARATH)"; NbS00025997g0011.1 protein AED:0.25 eAED:0.25 QI:134|0.5|0.66|1|0|0.66|3|0|489; (*GB) gi|225449442|ref|XP_002283087.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate acyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9CAY3|GPAT5_ARATH (e_value=0.0) Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1;; (*TAIR) AT3G11430.1 (e_value=0.0) | Symbols: ATGPAT5, GPAT5 | glycerol-3-phosphate acyltransferase 5 | chr3:3595911-3597678 FORWARD LENGTH=502;; (*ITAG) Solyc04g011600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4029691-4031884 transcript_region:SL2.40ch04:4029691..4031884+ go_terms:GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9T011_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0003841 NbS00054170g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.25|1|0.33|0.75|4|60|264; (*GB) gi|255575665|ref|XP_002528732.1| (e_value=3e-70) catalytic, putative [Ricinus communis];; (*TAIR) AT3G48410.1 (e_value=6e-59) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17925786-17928100 REVERSE LENGTH=385;; (*ITAG) Solyc09g009500.2.1 (e_value=9e-84) genomic_reference:SL2.40ch09 gene_region:2918891-2924458 transcript_region:SL2.40ch09:2918891..2924458- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00054170g0003.1 protein AED:0.80 eAED:0.88 QI:0|0|0|0.5|1|1|4|0|86 NbS00054170g0007.1 protein AED:0.26 eAED:0.30 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|11466000|ref|NP_054542.1| (e_value=1e-45) Ycf2 [Nicotiana tabacum];; (*SWP) sp|P09976|YCF2_TOBAC (e_value=3e-47) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=8e-40) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-45) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00005402g0013.1 protein AED:0.29 eAED:0.30 QI:0|1|0.66|1|1|1|6|0|341; (*GB) gi|350537875|ref|NP_001233803.1| (e_value=0.0) pto-interacting protein 1 [Solanum lycopersicum];; (*SWP) sp|Q41328|PTI1_SOLLC (e_value=0.0) Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2;; (*TAIR) AT3G17410.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:5956601-5958882 FORWARD LENGTH=364;; (*ITAG) Solyc05g053230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62504704-62508914 transcript_region:SL2.40ch05:62504704..62508914- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** C6ZRR6_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005402g0012.1 protein AED:0.17 eAED:0.17 QI:183|0.90|1|1|0.72|0.75|12|538|429; (*GB) gi|224110276|ref|XP_002315469.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWC9|CIPK1_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 1 OS=Arabidopsis thaliana GN=CIPK1 PE=1 SV=2;; (*TAIR) AT3G17510.1 (e_value=0.0) | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein kinase 1 | chr3:5989309-5992627 REVERSE LENGTH=444;; (*ITAG) Solyc05g053210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62492663-62497604 transcript_region:SL2.40ch05:62492663..62497604+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 1 (AHRD V1 **** A0MNI9_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00005402g0011.1 protein AED:0.36 eAED:0.36 QI:84|0.75|0.4|1|0.5|0.4|5|0|168; (*GB) gi|224110264|ref|XP_002315466.1| (e_value=5e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|O42877|FCF2_SCHPO (e_value=3e-17) rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf2 PE=2 SV=1;; (*TAIR) AT5G30495.1 (e_value=5e-59) | Symbols: | Fcf2 pre-rRNA processing protein | chr5:11380190-11381391 FORWARD LENGTH=196;; (*ITAG) Solyc05g053220.2.1 (e_value=1e-94) genomic_reference:SL2.40ch05 gene_region:62501221-62503686 transcript_region:SL2.40ch05:62501221..62503686+ functional_description:"rRNA-processing protein FCF2 (AHRD V1 *--- B2VVS0_PYRTR); contains Interpro domain(s) IPR014810 Fcf2 pre-rRNA processing "; NbS00000052g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|536; (*GB) gi|255090918|gb|ACU00619.1| (e_value=0.0) penetration and arbuscule morphogenesis protein [Petunia x hybrida];; (*SWP) sp|Q4UMH6|Y381_RICFE (e_value=5e-39) Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1;; (*TAIR) AT5G13530.1 (e_value=3e-25) | Symbols: KEG | protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1625;; (*ITAG) Solyc10g081500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61878337-61880805 transcript_region:SL2.40ch10:61878337..61880805+ go_terms:GO:0005198 functional_description:"Ankyrin repeat protein (AHRD V1 ***- A1DAS1_NEOFI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005198 NbS00000052g0007.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|91 NbS00000052g0004.1 protein AED:0.00 eAED:0.37 QI:106|-1|0|1|-1|1|1|104|122 NbS00000052g0009.1 protein AED:0.38 eAED:0.38 QI:161|0.2|0.16|0.66|1|0.83|6|0|141; (*GB) gi|238480134|ref|NP_001154686.1| (e_value=4e-22) double-stranded-RNA-binding protein 4 [Arabidopsis thaliana];; (*SWP) sp|Q8H1D4|DRB4_ARATH (e_value=1e-23) Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1;; (*TAIR) AT3G62800.3 (e_value=1e-24) | Symbols: | double-stranded-RNA-binding protein 4 | chr3:23225749-23227163 REVERSE LENGTH=329;; (*ITAG) Solyc01g056620.2.1 (e_value=2e-40) genomic_reference:SL2.40ch01 gene_region:47922648-47930463 transcript_region:SL2.40ch01:47922648..47930463+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- B5BUY7_ARATH); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00024973g0008.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|0|0|2|0|232; (*GB) gi|224095750|ref|XP_002310464.1| (e_value=5e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJ45|CCU11_ARATH (e_value=1e-73) Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1;; (*TAIR) AT3G21870.1 (e_value=1e-74) | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704813 REVERSE LENGTH=210;; (*ITAG) Solyc07g052610.2.1 (e_value=9e-125) genomic_reference:SL2.40ch07 gene_region:58400621-58402141 transcript_region:SL2.40ch07:58400621..58402141- go_terms:GO:0005515 functional_description:"Cyclin (AHRD V1 *-*- D8UD80_VOLCA); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515 NbS00058903g0005.1 protein AED:0.10 eAED:0.10 QI:152|0.82|0.83|1|0.94|0.94|18|410|567; (*GB) gi|356567330|ref|XP_003551874.1| (e_value=0.0) PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic [Glycine max];; (*SWP) sp|Q9SZ30|HIS5_ARATH (e_value=0.0) Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana GN=At4g26900 PE=1 SV=1;; (*TAIR) AT4G26900.1 (e_value=0.0) | Symbols: AT-HF, HISN4 | HIS HF | chr4:13515514-13519608 FORWARD LENGTH=592;; (*ITAG) Solyc07g064810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64017771-64025505 transcript_region:SL2.40ch07:64017771..64025505- go_terms:GO:0000107 functional_description:"Imidazole glycerol phosphate synthase subunit hisF (AHRD V1 *-** D2RFM3_ARCPA); contains Interpro domain(s) IPR014640 Imidazole glycerol phosphate synthase HisHF "; GO:0000107 NbS00002679g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.6|1|1|1|5|0|650; (*GB) gi|225424193|ref|XP_002280520.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 10-like [Vitis vinifera];; (*SWP) sp|Q9C9A6|PUB10_ARATH (e_value=0.0) U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1;; (*TAIR) AT1G71020.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:26790825-26793105 REVERSE LENGTH=628;; (*ITAG) Solyc05g008230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2622044-2626422 transcript_region:SL2.40ch05:2622044..2626422- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 11 (AHRD V1 **-- PUB11_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00002679g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|217; (*GB) gi|225424195|ref|XP_002284189.1| (e_value=1e-70) PREDICTED: uncharacterized protein At1g66480 [Vitis vinifera];; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=2e-42) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT2G01340.1 (e_value=2e-53) | Symbols: At17.1 | Encodes a protein whose expression is responsive to nematode infection. | chr2:164014-165068 FORWARD LENGTH=215;; (*ITAG) Solyc05g008210.2.1 (e_value=1e-95) genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)"; NbS00011020g0003.1 protein AED:0.18 eAED:0.19 QI:163|0.66|0.28|1|1|1|7|0|894; (*GB) gi|297736440|emb|CBI25311.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5R5F1|PRPF3_PONAB (e_value=8e-54) U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1;; (*TAIR) AT1G28060.1 (e_value=0.0) | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786;; (*ITAG) Solyc06g036580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:23374815-23378066 transcript_region:SL2.40ch06:23374815..23378066- go_terms:GO:0005515 functional_description:"U4/U6 small nuclear ribonucleoprotein Prp3 (AHRD V1 ***- C1N1Y8_MICPS); contains Interpro domain(s) IPR013881 Pre-mRNA-splicing factor 3 "; GO:0005515 NbS00058769g0001.1 protein AED:0.15 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|195 NbS00006176g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.33|0.66|1|1|3|0|230; (*GB) gi|225425424|ref|XP_002278036.1| (e_value=4e-80) PREDICTED: REF/SRPP-like protein At1g67360-like [Vitis vinifera];; (*SWP) sp|Q9FYF7|Y1736_ARATH (e_value=3e-68) REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1;; (*TAIR) AT1G67360.1 (e_value=2e-69) | Symbols: | Rubber elongation factor protein (REF) | chr1:25237072-25237913 REVERSE LENGTH=240;; (*ITAG) Solyc05g015390.2.1 (e_value=8e-140) genomic_reference:SL2.40ch05 gene_region:10448358-10450024 transcript_region:SL2.40ch05:10448358..10450024+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00006176g0101.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|138 NbS00006176g0103.1 protein AED:0.08 eAED:0.08 QI:1428|0.75|0.77|0.88|1|1|9|0|486 NbS00021968g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|108; (*GB) gi|359475334|ref|XP_003631660.1| (e_value=3e-31) PREDICTED: dnaJ homolog subfamily C member 2-like [Vitis vinifera];; (*TAIR) AT4G39250.1 (e_value=6e-31) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc12g089190.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62746778-62748217 transcript_region:SL2.40ch12:62746778..62748217- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00037305g0014.1 protein AED:0.11 eAED:0.11 QI:292|0.75|0.8|1|0.75|0.6|5|187|308; (*GB) gi|255547550|ref|XP_002514832.1| (e_value=2e-128) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G65230.1 (e_value=5e-118) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr1:24229167-24230764 FORWARD LENGTH=286;; (*ITAG) Solyc04g056580.2.1 (e_value=2e-152) genomic_reference:SL2.40ch04 gene_region:53690198-53692659 transcript_region:SL2.40ch04:53690198..53692659+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YK5_OSTTA)"; NbS00037305g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|3|0|129; (*GB) gi|292630750|sp|D1I234.1|DRE2_VITVI (e_value=2e-20) RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog;; (*SWP) sp|D1I234|DRE2_VITVI (e_value=6e-22) Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1;; (*TAIR) AT5G18400.1 (e_value=2e-16) | Symbols: | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | chr5:6092955-6094566 REVERSE LENGTH=269;; (*ITAG) Solyc03g119420.2.1 (e_value=5e-51) genomic_reference:SL2.40ch03 gene_region:62090764-62095229 transcript_region:SL2.40ch03:62090764..62095229+ go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00037305g0019.1 protein AED:0.23 eAED:0.23 QI:282|0.82|0.94|1|0.47|0.72|18|35|486; (*GB) gi|15982206|emb|CAC83608.1| (e_value=0.0) Na+/H+ antiporter, isoform 2 [Solanum lycopersicum];; (*SWP) sp|Q8RWU6|NHX6_ARATH (e_value=0.0) Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3;; (*TAIR) AT1G79610.1 (e_value=0.0) | Symbols: ATNHX6, NHX6 | Na+/H+ antiporter 6 | chr1:29953089-29957070 REVERSE LENGTH=535;; (*ITAG) Solyc04g056600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53709811-53725589 transcript_region:SL2.40ch04:53709811..53725589- go_terms:GO:0015385,GO:0015386 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q93YH1_SOLLC); contains Interpro domain(s) IPR018409 Na+/H+ exchanger, isoform 5/6/8, conserved region "; GO:0015385,GO:0015386 NbS00037305g0018.1 protein AED:0.32 eAED:0.34 QI:378|0.63|0.75|1|0.72|0.83|12|0|486; (*GB) gi|255547548|ref|XP_002514831.1| (e_value=0.0) Aspartic proteinase Asp1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=6e-140) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=6e-161) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc04g056590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53693242-53702994 transcript_region:SL2.40ch04:53693242..53702994- go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7KF83_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00008970g0007.1 protein AED:0.14 eAED:0.15 QI:609|0.84|0.80|1|0.56|0.69|26|0|1122; (*GB) gi|116047949|gb|ABJ53200.1| (e_value=0.0) myosin VIII-1 [Nicotiana benthamiana];; (*SWP) sp|Q9Y4I1|MYO5A_HUMAN (e_value=0.0) Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2;; (*TAIR) AT3G19960.1 (e_value=0.0) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc02g020910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:11008922-11043707 transcript_region:SL2.40ch02:11008922..11043707+ go_terms:GO:0060001 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00048900g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|296; (*GB) gi|2081604|dbj|BAA19926.1| (e_value=8e-96) PEThy; ZPT4-2 [Petunia x hybrida];; (*TAIR) AT1G26610.1 (e_value=2e-20) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc01g010410.2.1 (e_value=1e-120) genomic_reference:SL2.40ch01 gene_region:5311121-5313481 transcript_region:SL2.40ch01:5311121..5313481+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00048900g0007.1 protein AED:0.37 eAED:0.40 QI:0|1|0|1|0|0|2|0|159; (*GB) gi|1786146|dbj|BAA20137.1| (e_value=5e-26) ZPT4-3 [Petunia x hybrida];; (*ITAG) Solyc01g010410.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:5311121-5313481 transcript_region:SL2.40ch01:5311121..5313481+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00048900g0001.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|164; (*GB) gi|1786146|dbj|BAA20137.1| (e_value=4e-30) ZPT4-3 [Petunia x hybrida];; (*TAIR) AT1G26610.1 (e_value=2e-12) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc04g005440.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:307618-309297 transcript_region:SL2.40ch04:307618..309297+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00030502g0001.1 protein AED:0.01 eAED:0.01 QI:225|1|1|1|0|0|3|214|67 NbS00060073g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|224117654|ref|XP_002331598.1| (e_value=7e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59980.1 (e_value=1e-13) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:22154528-22155570 REVERSE LENGTH=273;; (*ITAG) Solyc08g015960.2.1 (e_value=9e-64) genomic_reference:SL2.40ch08 gene_region:6322020-6329392 transcript_region:SL2.40ch08:6322020..6329392+ go_terms:GO:0000049 functional_description:"Methionyl-tRNA synthetase (AHRD V1 *-*- B6T3D4_MAIZE); contains Interpro domain(s) IPR002547 tRNA-binding region "; GO:0000049 NbS00017703g0008.1 protein AED:0.18 eAED:0.18 QI:101|1|1|1|1|1|3|287|198; (*GB) gi|388517015|gb|AFK46569.1| (e_value=1e-59) unknown [Medicago truncatula];; (*TAIR) AT4G22320.1 (e_value=3e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc11g012090.1.1 (e_value=2e-89) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5022333-5025981 transcript_region:SL2.40ch11:5022333..5025981- functional_description:"Unknown Protein (AHRD V1)"; NbS00017703g0002.1 protein AED:0.21 eAED:0.21 QI:68|0.5|0.55|0.77|1|1|9|0|390; (*GB) gi|357480429|ref|XP_003610500.1| (e_value=2e-96) Acyl-protein thioesterase [Medicago truncatula];; (*SWP) sp|P0CL94|APTH1_CRYNJ (e_value=2e-27) Acyl-protein thioesterase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNF02430 PE=3 SV=1;; (*TAIR) AT4G22300.1 (e_value=9e-87) | Symbols: SOBER1 | carboxylesterases | chr4:11787560-11789252 REVERSE LENGTH=262;; (*ITAG) Solyc11g012070.1.1 (e_value=8e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5009272-5013900 transcript_region:SL2.40ch11:5009272..5013900- go_terms:GO:0016787 functional_description:"Acyl-protein thioesterase 1 (AHRD V1 **-- B6U7L3_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0016787 NbS00017703g0007.1 protein AED:0.34 eAED:0.34 QI:23|0.75|0.8|1|1|1|5|377|159; (*GB) gi|388499020|gb|AFK37576.1| (e_value=4e-67) unknown [Lotus japonicus];; (*SWP) sp|O95563|BR44_HUMAN (e_value=2e-32) Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1;; (*TAIR) AT4G22310.1 (e_value=8e-67) | Symbols: | Uncharacterised protein family (UPF0041) | chr4:11791443-11792638 FORWARD LENGTH=108;; (*ITAG) Solyc11g012080.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5015463-5019291 transcript_region:SL2.40ch11:5015463..5019291+ functional_description:"Brain protein 44 (AHRD V1 **-- B4FWA7_MAIZE); contains Interpro domain(s) IPR005336 Uncharacterised protein family UPF0041 "; NbS00004682g0006.1 protein AED:0.08 eAED:0.08 QI:6|0.66|0.25|1|0.66|0.75|4|0|412; (*GB) gi|31323445|gb|AAP47024.1|AF375965_1 (e_value=0.0) bell-like homeodomain protein 1, partial [Solanum lycopersicum];; (*SWP) sp|Q1PFD1|BLH11_ARATH (e_value=5e-84) BEL1-like homeodomain protein 11 OS=Arabidopsis thaliana GN=BLH11 PE=2 SV=1;; (*TAIR) AT1G75430.1 (e_value=4e-85) | Symbols: BLH11 | BEL1-like homeodomain 11 | chr1:28308121-28309517 REVERSE LENGTH=290;; (*ITAG) Solyc04g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62460512-62462135 transcript_region:SL2.40ch04:62460512..62462135- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 11 (AHRD V1 **-- BLH11_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00043171g0012.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|57013880|ref|YP_173354.1| (e_value=5e-66) maturase-related protein [Nicotiana tabacum];; (*SWP) sp|P0A3U1|LTRA_LACLM (e_value=9e-17) Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1;; (*ITAG) ATMG00520.1 (e_value=2e-60) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00043171g0005.1 protein AED:0.22 eAED:0.22 QI:117|1|0.5|1|1|1|2|0|147; (*GB) gi|225440069|ref|XP_002277086.1| (e_value=3e-39) PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|P62371|SYH_LEPIC (e_value=3e-15) Histidine--tRNA ligase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=hisS PE=3 SV=1;; (*TAIR) AT3G46100.1 (e_value=9e-39) | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486;; (*ITAG) Solyc03g119280.2.1 (e_value=3e-55) genomic_reference:SL2.40ch03 gene_region:61963971-61972631 transcript_region:SL2.40ch03:61963971..61972631- go_terms:GO:0003879,GO:0030234 functional_description:"Histidyl-tRNA synthetase 1 (AHRD V1 ***- D7LWN6_ARALY); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0003879,GO:0030234 NbS00043171g0017.1 protein AED:0.18 eAED:0.19 QI:0|0.74|0.67|0.92|0.55|0.60|28|0|1984; (*GB) gi|225455984|ref|XP_002278705.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera];; (*SWP) sp|Q5R6Y0|HBS1L_PONAB (e_value=3e-110) HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1;; (*TAIR) AT3G18290.1 (e_value=0.0) | Symbols: EMB2454, BTS | zinc finger protein-related | chr3:6274308-6280174 FORWARD LENGTH=1254;; (*ITAG) Solyc03g119300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61996468-62009300 transcript_region:SL2.40ch03:61996468..62009300+ go_terms:GO:0004872,GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0004872,GO:0008270 NbS00020897g0011.1 protein AED:0.15 eAED:0.15 QI:131|1|1|1|1|1|4|337|268; (*GB) gi|350536411|ref|NP_001234501.1| (e_value=1e-153) psi14A protein [Solanum lycopersicum];; (*SWP) sp|Q67YC0|PPSP1_ARATH (e_value=6e-127) Inorganic pyrophosphatase 1 OS=Arabidopsis thaliana GN=PS2 PE=1 SV=1;; (*TAIR) AT1G73010.1 (e_value=5e-128) | Symbols: ATPS2, PS2 | phosphate starvation-induced gene 2 | chr1:27464780-27466180 REVERSE LENGTH=295;; (*ITAG) Solyc03g121420.2.1 (e_value=6e-176) genomic_reference:SL2.40ch03 gene_region:63588511-63589972 transcript_region:SL2.40ch03:63588511..63589972+ go_terms:GO:0003824 functional_description:"Phosphatase (AHRD V1 ***- D2V497_NAEGR); contains Interpro domain(s) IPR016965 Pyridoxal phosphate phosphatase, PHOSPHO2 "; GO:0003824 NbS00020897g0012.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|218; (*GB) gi|255550832|ref|XP_002516464.1| (e_value=3e-106) NADH-plastoquinone oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q43844|NDUS7_SOLTU (e_value=6e-104) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=5e-102) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=4e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00020897g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc02g077730.2.1 (e_value=2e-26) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020897g0013.1 protein AED:0.24 eAED:0.25 QI:376|1|0.92|1|0.92|0.92|14|0|517; (*GB) gi|225442335|ref|XP_002280910.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera];; (*SWP) sp|Q39247|2ABB_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=0.0) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc03g121410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63565537-63573588 transcript_region:SL2.40ch03:63565537..63573588- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00015049g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|205; (*GB) gi|255557913|ref|XP_002519985.1| (e_value=4e-83) receptor protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=3e-59) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT1G79620.1 (e_value=4e-70) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:29957633-29962174 REVERSE LENGTH=971;; (*ITAG) Solyc10g085670.1.1 (e_value=7e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64098873-64104331 transcript_region:SL2.40ch10:64098873..64104331- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00027779g0002.1 protein AED:0.10 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|127; (*GB) gi|302142692|emb|CBI19895.3| (e_value=4e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SYQ8|CLV1_ARATH (e_value=6e-52) Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3;; (*TAIR) AT1G75820.1 (e_value=4e-53) | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich receptor-like protein kinase family protein | chr1:28463631-28466652 REVERSE LENGTH=980;; (*ITAG) Solyc04g081590.2.1 (e_value=2e-66) genomic_reference:SL2.40ch04 gene_region:63126375-63130644 transcript_region:SL2.40ch04:63126375..63130644- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00005724g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|550; (*GB) gi|359486629|ref|XP_002278924.2| (e_value=0.0) PREDICTED: putative UPF0481 protein At3g02645-like [Vitis vinifera];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=3e-160) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=2e-161) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc06g068340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38728981-38730819 transcript_region:SL2.40ch06:38728981..38730819+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 **-- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00005724g0005.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.2|1|1|5|0|162 NbS00037243g0004.1 protein AED:0.14 eAED:0.14 QI:20|1|0.87|1|1|1|8|286|630; (*GB) gi|225445848|ref|XP_002278056.1| (e_value=0.0) PREDICTED: signal recognition particle receptor subunit alpha [Vitis vinifera];; (*SWP) sp|Q9DBG7|SRPR_MOUSE (e_value=8e-116) Signal recognition particle receptor subunit alpha OS=Mus musculus GN=Srpr PE=1 SV=1;; (*TAIR) AT4G30600.1 (e_value=0.0) | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634;; (*ITAG) Solyc12g009990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3132677-3136254 transcript_region:SL2.40ch12:3132677..3136254+ go_terms:GO:0017111,GO:0006614,GO:0005785 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1GCL3_PARBD); contains Interpro domain(s) IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal "; GO:0017111,GO:0006614,GO:0005785 NbS00037243g0003.1 protein AED:0.75 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|62 NbS00018090g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|0.5|1|1|2|0|115; (*GB) gi|255566866|ref|XP_002524416.1| (e_value=5e-27) 60S acidic ribosomal protein P1, putative [Ricinus communis];; (*SWP) sp|P52855|RLA1_MAIZE (e_value=5e-24) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=4e-27) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00027912g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|80; (*GB) gi|4105786|gb|AAD02550.1| (e_value=4e-22) PGPS/D8 [Petunia x hybrida];; (*ITAG) Solyc10g045580.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:30075326-30075478 transcript_region:SL2.40ch10:30075326..30075478+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 ***- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc "; GO:0005746 NbS00027912g0013.1 protein AED:0.36 eAED:0.36 QI:0|0.6|0.33|0.83|0.8|0.83|6|0|184; (*GB) gi|18378982|ref|NP_563657.1| (e_value=1e-95) ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana];; (*SWP) sp|Q9S834|CLPP5_ARATH (e_value=3e-97) ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1;; (*TAIR) AT1G02560.1 (e_value=2e-98) | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP protease 5 | chr1:538000-539805 FORWARD LENGTH=298;; (*ITAG) Solyc01g100520.2.1 (e_value=2e-95) genomic_reference:SL2.40ch01 gene_region:82287668-82292399 transcript_region:SL2.40ch01:82287668..82292399- go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- Q93YH0_SOLLC); contains Interpro domain(s) IPR018215 Peptidase S14, ClpP, active site "; GO:0006508 NbS00027912g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|321; (*GB) gi|27151627|sp|Q9XGI7.1|NAS_SOLLC (e_value=0.0) RecName: Full=Nicotianamine synthase; AltName: Full=Chloronerva; AltName: Full=S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase;; (*SWP) sp|Q9XGI7|NAS_SOLLC (e_value=0.0) Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1;; (*TAIR) AT1G09240.1 (e_value=6e-137) | Symbols: NAS3, ATNAS3 | nicotianamine synthase 3 | chr1:2984950-2985912 FORWARD LENGTH=320;; (*ITAG) Solyc01g100490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82262052-82263287 transcript_region:SL2.40ch01:82262052..82263287+ go_terms:GO:0030418 functional_description:"Nicotianamine synthase (AHRD V1 ***- A3DUI9_MALXI); contains Interpro domain(s) IPR004298 Nicotianamine synthase "; GO:0030418 NbS00008861g0002.1 protein AED:0.04 eAED:0.04 QI:525|0.75|0.8|1|0|0|5|2760|503; (*GB) gi|147784524|emb|CAN61725.1| (e_value=0.0) hypothetical protein VITISV_032420 [Vitis vinifera];; (*SWP) sp|Q9LFI1|PP280_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1;; (*TAIR) AT3G53360.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19784502-19786808 FORWARD LENGTH=768;; (*ITAG) Solyc09g007040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:703220-705475 transcript_region:SL2.40ch09:703220..705475- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUH3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00008861g0018.1 protein AED:0.07 eAED:0.07 QI:13|0.5|0.33|1|0|0|3|0|263; (*GB) gi|224088615|ref|XP_002308497.1| (e_value=9e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=3e-14) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT5G02750.1 (e_value=3e-37) | Symbols: | RING/U-box superfamily protein | chr5:620101-620952 FORWARD LENGTH=283;; (*ITAG) Solyc09g007060.2.1 (e_value=4e-107) genomic_reference:SL2.40ch09 gene_region:712078-714475 transcript_region:SL2.40ch09:712078..714475+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00008861g0019.1 protein AED:0.15 eAED:0.17 QI:22|0.78|0.62|1|0.69|0.70|24|0|1149; (*GB) gi|255584146|ref|XP_002532813.1| (e_value=0.0) Bipolar kinesin KRP-130, putative [Ricinus communis];; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc09g007030.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:694635-701527 transcript_region:SL2.40ch09:694635..701527+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- D8PT11_SCHCO); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00008861g0006.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|1|1|3|0|576; (*GB) gi|225439799|ref|XP_002273893.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Vitis vinifera];; (*SWP) sp|Q9ZUT5|PP191_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1;; (*TAIR) AT2G37310.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:15665102-15667075 REVERSE LENGTH=657;; (*ITAG) Solyc09g007050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:707483-709438 transcript_region:SL2.40ch09:707483..709438+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJR5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00020124g0001.1 protein AED:0.16 eAED:0.19 QI:0|0.58|0.61|1|1|1|13|0|648; (*GB) gi|359484258|ref|XP_002276918.2| (e_value=0.0) PREDICTED: beta-galactosidase 7-like [Vitis vinifera];; (*SWP) sp|Q9C6W4|BGA15_ARATH (e_value=0.0) Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1;; (*TAIR) AT1G31740.1 (e_value=0.0) | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908 REVERSE LENGTH=786;; (*ITAG) Solyc07g042220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52608232-52612572 transcript_region:SL2.40ch07:52608232..52612572+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9RR68_RICCO); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00003430g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|151 NbS00003430g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|207; (*GB) gi|1346736|sp|P49173.1|NIP1_NICAL (e_value=9e-138) RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein;; (*SWP) sp|P49173|NIP1_NICAL (e_value=3e-139) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37820.1 (e_value=1e-91) | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein 4;2 | chr5:15050261-15051542 FORWARD LENGTH=283;; (*ITAG) Solyc02g091420.2.1 (e_value=1e-110) genomic_reference:SL2.40ch02 gene_region:47291512-47293127 transcript_region:SL2.40ch02:47291512..47293127- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00003430g0014.1 protein AED:0.16 eAED:0.18 QI:1391|0.82|0.83|1|0.69|0.75|24|0|1012; (*GB) gi|297828818|ref|XP_002882291.1| (e_value=0.0) hypothetical protein ARALYDRAFT_477585 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=0.0) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=0.0) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc02g091410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47268452-47288648 transcript_region:SL2.40ch02:47268452..47288648- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00002343g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|37993665|gb|AAR06918.1| (e_value=0.0) UDP-glycosyltransferase 91D1 [Stevia rebaudiana];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=3e-178) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=1e-162) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00056330g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.66|1|1|1|6|0|380; (*GB) gi|225450661|ref|XP_002282985.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 5 [Vitis vinifera];; (*SWP) sp|O80492|P2C05_ARATH (e_value=7e-178) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=5e-179) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00009879g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.33|1|1|3|0|537; (*GB) gi|111481711|gb|ABC25060.2| (e_value=0.0) ZTL [Ipomoea nil];; (*SWP) sp|Q94BT6|ADO1_ARATH (e_value=0.0) Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2;; (*TAIR) AT5G57360.1 (e_value=0.0) | Symbols: ZTL, LKP1, ADO1, FKL2 | Galactose oxidase/kelch repeat superfamily protein | chr5:23241597-23244256 FORWARD LENGTH=609;; (*ITAG) Solyc07g017750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7937097-7939889 transcript_region:SL2.40ch07:7937097..7939889+ go_terms:GO:0005515 functional_description:"Flavin-binding kelch domain F box protein (AHRD V1 **-* D7KVS5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00009879g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|111481711|gb|ABC25060.2| (e_value=3e-28) ZTL [Ipomoea nil];; (*SWP) sp|Q94BT6|ADO1_ARATH (e_value=5e-23) Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2;; (*TAIR) AT5G57360.1 (e_value=4e-24) | Symbols: ZTL, LKP1, ADO1, FKL2 | Galactose oxidase/kelch repeat superfamily protein | chr5:23241597-23244256 FORWARD LENGTH=609;; (*ITAG) Solyc07g017740.2.1 (e_value=5e-38) genomic_reference:SL2.40ch07 gene_region:7924102-7927333 transcript_region:SL2.40ch07:7924102..7927333+ go_terms:GO:0007165 functional_description:"PAS (AHRD V1 *--- A2Q1M3_MEDTR); contains Interpro domain(s) IPR000014 PAS "; GO:0007165 NbS00014576g0007.1 protein AED:0.19 eAED:0.25 QI:0|0.44|0.4|0.8|0.88|1|10|501|509; (*GB) gi|224098028|ref|XP_002311109.1| (e_value=6e-108) global transcription factor group [Populus trichocarpa];; (*SWP) sp|Q84XV2|GTE1_ARATH (e_value=7e-80) Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1;; (*TAIR) AT2G34900.1 (e_value=5e-81) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386;; (*ITAG) Solyc09g090370.2.1 (e_value=1e-129) genomic_reference:SL2.40ch09 gene_region:65243091-65247723 transcript_region:SL2.40ch09:65243091..65247723+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00024090g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0|2|0|242; (*GB) gi|224103439|ref|XP_002313057.1| (e_value=3e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49330.1 (e_value=1e-61) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:18250043-18251038 FORWARD LENGTH=331;; (*ITAG) Solyc09g090450.1.1 (e_value=3e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65310473-65311249 transcript_region:SL2.40ch09:65310473..65311249- functional_description:"Unknown Protein (AHRD V1)"; NbS00030547g0009.1 protein AED:0.06 eAED:0.06 QI:289|0.83|0.85|1|0.83|0.85|7|380|229; (*GB) gi|225429494|ref|XP_002278305.1| (e_value=3e-124) PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Vitis vinifera];; (*SWP) sp|Q84MC2|LOG8_ARATH (e_value=7e-122) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 OS=Arabidopsis thaliana GN=LOG8 PE=1 SV=1;; (*TAIR) AT5G11950.2 (e_value=5e-123) | Symbols: | Putative lysine decarboxylase family protein | chr5:3855072-3856815 FORWARD LENGTH=216;; (*ITAG) Solyc08g062820.2.1 (e_value=3e-150) genomic_reference:SL2.40ch08 gene_region:49347014-49349711 transcript_region:SL2.40ch08:49347014..49349711- go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00030547g0010.1 protein AED:0.04 eAED:0.04 QI:608|0.83|0.85|1|1|1|7|374|335; (*GB) gi|147866674|emb|CAN83681.1| (e_value=0.0) hypothetical protein VITISV_003846 [Vitis vinifera];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=6e-62) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT1G14560.1 (e_value=3e-150) | Symbols: | Mitochondrial substrate carrier family protein | chr1:4981300-4983082 FORWARD LENGTH=331;; (*ITAG) Solyc08g062860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49439890-49446984 transcript_region:SL2.40ch08:49439890..49446984+ go_terms:GO:0015228 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0015228 NbS00030547g0002.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|255550075|ref|XP_002516088.1| (e_value=2e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g062840.1.1 (e_value=1e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:49385961-49386674 transcript_region:SL2.40ch08:49385961..49386674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030547g0013.1 protein AED:0.10 eAED:0.10 QI:0|0|0.5|1|0|0|2|166|102; (*GB) gi|225442219|ref|XP_002277637.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100267009 [Vitis vinifera];; (*TAIR) AT5G11970.1 (e_value=1e-23) | Symbols: | Protein of unknown function (DUF3511) | chr5:3863289-3863606 REVERSE LENGTH=105;; (*ITAG) Solyc08g062810.1.1 (e_value=2e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:49305657-49305980 transcript_region:SL2.40ch08:49305657..49305980+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042689g0001.1 protein AED:0.23 eAED:0.56 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|133711808|gb|ABO36626.1| (e_value=5e-42) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=6e-18) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=5e-19) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc10g079220.2.1 (e_value=9e-45) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00019179g0001.1 protein AED:0.19 eAED:0.36 QI:0|0.5|0|1|1|1|3|0|288; (*GB) gi|255567234|ref|XP_002524598.1| (e_value=2e-43) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SSE5|COL9_ARATH (e_value=8e-20) Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1;; (*TAIR) AT3G07650.4 (e_value=6e-21) | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-2443901 FORWARD LENGTH=372;; (*ITAG) Solyc12g006240.1.1 (e_value=6e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:756961-761422 transcript_region:SL2.40ch12:756961..761422- go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005515,GO:0003700 NbS00023448g0013.1 protein AED:0.14 eAED:0.15 QI:505|1|0.5|1|1|1|2|0|224; (*GB) gi|255568563|ref|XP_002525255.1| (e_value=6e-79) LOB domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FN11|LBD37_ARATH (e_value=8e-71) LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1;; (*TAIR) AT5G67420.1 (e_value=6e-72) | Symbols: LBD37, ASL39 | LOB domain-containing protein 37 | chr5:26904576-26905415 REVERSE LENGTH=250;; (*ITAG) Solyc01g107190.2.1 (e_value=1e-137) genomic_reference:SL2.40ch01 gene_region:86579758-86580843 transcript_region:SL2.40ch01:86579758..86580843+ functional_description:"LOB domain protein 38 (AHRD V1 *-*- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00023448g0012.1 protein AED:0.21 eAED:0.21 QI:349|1|0.66|1|0.2|0.33|6|0|657; (*GB) gi|225428969|ref|XP_002264153.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera];; (*SWP) sp|O80970|NPY2_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana GN=NPY2 PE=2 SV=1;; (*TAIR) AT2G14820.1 (e_value=0.0) | Symbols: NPY2 | Phototropic-responsive NPH3 family protein | chr2:6358864-6361300 FORWARD LENGTH=634;; (*ITAG) Solyc01g107180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00023448g0017.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|0|0|2|0|271; (*GB) gi|87116459|dbj|BAE79382.1| (e_value=6e-20) unnamed protein product [Ipomoea batatas]; NbS00023448g0018.1 protein AED:0.85 eAED:0.85 QI:0|0|0.5|0.5|0|0|2|17|77 NbS00028425g0001.1 protein AED:0.29 eAED:0.31 QI:0|1|0.5|1|0|0|2|261|345; (*GB) gi|255565325|ref|XP_002523654.1| (e_value=4e-135) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G19950.1 (e_value=1e-123) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809977-10810942 FORWARD LENGTH=321;; (*ITAG) Solyc02g031830.1.1 (e_value=2e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:17755466-17756437 transcript_region:SL2.40ch02:17755466..17756437+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042812g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.4|0.6|0.25|0.4|5|0|173; (*GB) gi|255560414|ref|XP_002521222.1| (e_value=2e-60) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G67080.1 (e_value=2e-61) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc03g034240.2.1 (e_value=3e-64) genomic_reference:SL2.40ch03 gene_region:10209124-10213889 transcript_region:SL2.40ch03:10209124..10213889- go_terms:GO:0034020 functional_description:"Chromosome 18 contig 1 DNA sequence (AHRD V1 *-*- Q00SF3_OSTTA)"; GO:0034020 NbS00042812g0008.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|4|386|180; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=3e-119) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=8e-121) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=2e-94) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=4e-118) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00020515g0007.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0|2|0|92 NbS00020515g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|255568343|ref|XP_002525146.1| (e_value=4e-36) Transcription factor RF2a, putative [Ricinus communis];; (*TAIR) AT2G42380.1 (e_value=5e-30) | Symbols: ATBZIP34, BZIP34 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17647205-17648660 REVERSE LENGTH=310;; (*ITAG) Solyc07g053450.2.1 (e_value=2e-58) genomic_reference:SL2.40ch07 gene_region:59219093-59221036 transcript_region:SL2.40ch07:59219093..59221036- go_terms:GO:0016563,GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 **** D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0016563,GO:0003677 NbS00013614g0004.1 protein AED:0.04 eAED:0.04 QI:436|1|1|1|0.85|0.75|8|731|252; (*GB) gi|225456507|ref|XP_002284683.1| (e_value=1e-116) PREDICTED: pre-rRNA-processing protein ESF2 [Vitis vinifera];; (*SWP) sp|A3LVD5|ESF2_PICST (e_value=3e-41) Pre-rRNA-processing protein ESF2 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=ESF2 PE=3 SV=2;; (*TAIR) AT3G56510.2 (e_value=6e-96) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:20944348-20946235 REVERSE LENGTH=257;; (*ITAG) Solyc10g008130.2.1 (e_value=1e-148) genomic_reference:SL2.40ch10 gene_region:2270922-2273383 transcript_region:SL2.40ch10:2270922..2273383+ go_terms:GO:0016251 functional_description:"Pre-rRNA-processing protein ESF2 (AHRD V1 ***- D0MVG4_PHYIN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0016251 NbS00014535g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|224068388|ref|XP_002302734.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FI53|FUM2_ARATH (e_value=0.0) Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1;; (*TAIR) AT5G50950.2 (e_value=0.0) | Symbols: FUM2 | FUMARASE 2 | chr5:20729687-20733636 FORWARD LENGTH=499;; (*ITAG) Solyc09g075450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62645088-62653706 transcript_region:SL2.40ch09:62645088..62653706- go_terms:GO:0005515 functional_description:"Fumarate hydratase class II (AHRD V1 ***- C5GAL1_AJEDR); contains Interpro domain(s) IPR005677 Fumarate hydratase, class II "; GO:0005515 NbS00014535g0007.1 protein AED:0.17 eAED:0.17 QI:165|0.8|1|1|0.6|0.5|6|423|570; (*GB) gi|225424936|ref|XP_002271193.1| (e_value=1e-99) PREDICTED: protein IQ-DOMAIN 31 [Vitis vinifera];; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=2e-68) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G74690.1 (e_value=2e-69) | Symbols: IQD31 | IQ-domain 31 | chr1:28061498-28063924 REVERSE LENGTH=587;; (*ITAG) Solyc05g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1694652-1699497 transcript_region:SL2.40ch05:1694652..1699497+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T984_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00029825g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225447429|ref|XP_002281878.1| (e_value=9e-44) PREDICTED: calcium-binding protein PBP1 [Vitis vinifera];; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=2e-32) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G27280.1 (e_value=1e-34) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc07g053050.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:58824712-58825062 transcript_region:SL2.40ch07:58824712..58825062- go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 **-- A7E7G2_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00035467g0013.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.75|1|1|1|4|625|223; (*GB) gi|297798872|ref|XP_002867320.1| (e_value=7e-28) hypothetical protein ARALYDRAFT_328625 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8L9A0|RM21_ARATH (e_value=3e-30) 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1;; (*TAIR) AT4G30930.1 (e_value=2e-31) | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270;; (*ITAG) Solyc02g078200.2.1 (e_value=3e-73) genomic_reference:SL2.40ch02 gene_region:37533967-37538228 transcript_region:SL2.40ch02:37533967..37538228+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L21 (AHRD V1 *-*- B6TJJ8_MAIZE); contains Interpro domain(s) IPR001787 Ribosomal protein L21 "; GO:0005840 NbS00035467g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.5|1|1|1|6|0|774; (*GB) gi|170282492|gb|ACB12194.1| (e_value=0.0) PHO2 [Nicotiana benthamiana];; (*SWP) sp|Q8VY10|UBC24_ARATH (e_value=3e-178) Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1;; (*TAIR) AT2G33770.1 (e_value=2e-179) | Symbols: UBC24, ATUBC24, PHO2 | phosphate 2 | chr2:14277785-14281482 REVERSE LENGTH=907;; (*ITAG) Solyc02g078210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37547439-37553218 transcript_region:SL2.40ch02:37547439..37553218+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 22 (AHRD V1 ***- D7L888_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00017259g0010.1 protein AED:0.07 eAED:0.07 QI:254|1|0.92|1|0.61|0.57|14|0|905; (*GB) gi|350535751|ref|NP_001234467.1| (e_value=0.0) aminodeoxychorismate synthase/glutamine amidotransferase [Solanum lycopersicum];; (*SWP) sp|P32483|PABS_STRGR (e_value=6e-148) Para-aminobenzoate synthase OS=Streptomyces griseus GN=pab PE=3 SV=1;; (*TAIR) AT2G28880.1 (e_value=0.0) | Symbols: emb1997, ADCS | para-aminobenzoate (PABA) synthase family protein | chr2:12398937-12403108 REVERSE LENGTH=919;; (*ITAG) Solyc04g049360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:40766130-40778394 transcript_region:SL2.40ch04:40766130..40778394- go_terms:GO:0005515,GO:0046820 functional_description:"4-amino-4-deoxychorismate synthase component I (AHRD V1 **** D9W9C0_STRHY); contains Interpro domain(s) IPR005802 Para-aminobenzoate synthase, component I "; GO:0005515,GO:0046820 NbS00017259g0011.1 protein AED:0.10 eAED:0.10 QI:232|0.25|0.4|0.6|0.75|0.8|5|0|103; (*GB) gi|310697414|gb|ADP06662.1| (e_value=1e-17) auxin response factor 13-1 [Solanum lycopersicum];; (*ITAG) Solyc05g056040.2.1 (e_value=3e-20) genomic_reference:SL2.40ch05 gene_region:64568906-64574482 transcript_region:SL2.40ch05:64568906..64574482- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 14 (AHRD V1 *-*- D9HNU1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005634,GO:0006355 NbS00017259g0009.1 protein AED:0.65 eAED:0.72 QI:0|1|0|1|0|0|2|0|84; (*GB) gi|24785191|dbj|BAC23059.1| (e_value=6e-22) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9ZPY6|ARFK_ARATH (e_value=3e-20) Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3;; (*TAIR) AT2G46530.3 (e_value=2e-21) | Symbols: ARF11 | auxin response factor 11 | chr2:19105112-19108029 FORWARD LENGTH=622;; (*ITAG) Solyc05g056040.2.1 (e_value=1e-23) genomic_reference:SL2.40ch05 gene_region:64568906-64574482 transcript_region:SL2.40ch05:64568906..64574482- go_terms:GO:0005634,GO:0006355 functional_description:"Auxin response factor 14 (AHRD V1 *-*- D9HNU1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005634,GO:0006355 NbS00011574g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|69; (*GB) gi|6626173|gb|AAF19524.1|AF213464_1 (e_value=3e-35) cysteine-rich protein [Nicotiana tabacum];; (*ITAG) Solyc09g065450.2.1 (e_value=2e-18) genomic_reference:SL2.40ch09 gene_region:59150782-59151825 transcript_region:SL2.40ch09:59150782..59151825- functional_description:"Cysteine-rich protein (AHRD V1 ***- Q9SDN7_TOBAC); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00044533g0005.1 protein AED:0.26 eAED:0.26 QI:166|1|1|1|1|1|13|440|550; (*GB) gi|224094979|ref|XP_002310313.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYN6|K6PF5_ARATH (e_value=0.0) 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1;; (*TAIR) AT2G22480.1 (e_value=0.0) | Symbols: PFK5 | phosphofructokinase 5 | chr2:9545670-9548414 FORWARD LENGTH=537;; (*ITAG) Solyc04g014270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4578308-4586276 transcript_region:SL2.40ch04:4578308..4586276+ go_terms:GO:0003872 functional_description:"Phosphofructokinase family protein (AHRD V1 **** D7LE10_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0003872 NbS00044533g0002.1 protein AED:0.27 eAED:0.37 QI:0|0|0|1|1|1|2|0|136; (*ITAG) Solyc04g013200.1.1 (e_value=8e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4495150-4495647 transcript_region:SL2.40ch04:4495150..4495647- functional_description:"Unknown Protein (AHRD V1)"; NbS00022610g0110.1 protein AED:0.06 eAED:0.06 QI:901|0.66|0.92|0.92|0.91|0.92|13|236|775 NbS00022610g0109.1 protein AED:0.13 eAED:0.13 QI:372|0|0.2|0.4|1|1|5|0|117 NbS00022610g0119.1 protein AED:0.34 eAED:0.43 QI:0|0|0|0.5|0|0.5|4|0|233 NbS00022610g0117.1 protein AED:0.41 eAED:0.57 QI:54|1|0|1|0|0|2|0|43 NbS00022610g0104.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|485 NbS00022610g0122.1 protein AED:0.38 eAED:0.39 QI:56|1|0|1|1|0|2|0|192 NbS00025300g0001.1 protein AED:0.15 eAED:0.15 QI:204|0.93|0.94|1|0.81|0.82|17|324|613; (*GB) gi|255579273|ref|XP_002530482.1| (e_value=0.0) succinate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|O82663|DHSA1_ARATH (e_value=0.0) Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1;; (*TAIR) AT5G66760.1 (e_value=0.0) | Symbols: SDH1-1 | succinate dehydrogenase 1-1 | chr5:26653776-26657224 FORWARD LENGTH=634;; (*ITAG) Solyc02g085350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42847985-42855215 transcript_region:SL2.40ch02:42847985..42855215- go_terms:GO:0000104 functional_description:"Succinate dehydrogenase flavoprotein subunit (AHRD V1 **** B8CCT7_THAPS); contains Interpro domain(s) IPR011281 Succinate dehydrogenase, flavoprotein subunit "; GO:0000104 NbS00017083g0005.1 protein AED:0.09 eAED:0.09 QI:63|0.87|0.82|1|0.81|0.76|17|148|682; (*GB) gi|225444694|ref|XP_002277754.1| (e_value=0.0) PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis vinifera];; (*SWP) sp|Q9FT72|RQL3_ARATH (e_value=0.0) ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana GN=RECQL3 PE=1 SV=1;; (*TAIR) AT4G35740.1 (e_value=0.0) | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase family protein | chr4:16936233-16940172 FORWARD LENGTH=713;; (*ITAG) Solyc07g042010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52175947-52191240 transcript_region:SL2.40ch07:52175947..52191240- go_terms:GO:0017116 functional_description:"ATP-dependent DNA helicase (AHRD V1 *-** D8G648_9CYAN); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0017116 NbS00043372g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|402; (*GB) gi|339521619|gb|AEJ84000.1| (e_value=0.0) CONSTANS protein [Nicotiana tabacum];; (*SWP) sp|Q96502|COL2_ARATH (e_value=6e-99) Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1;; (*TAIR) AT3G02380.1 (e_value=5e-100) | Symbols: COL2, ATCOL2 | CONSTANS-like 2 | chr3:487438-488624 REVERSE LENGTH=347;; (*ITAG) Solyc02g089540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45900821-45903523 transcript_region:SL2.40ch02:45900821..45903523- go_terms:GO:0003700,GO:0042802 functional_description:"Tomato CONSTANS-like 1"; GO:0003700,GO:0042802 NbS00043372g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.81|1|1|1|11|0|568; (*GB) gi|224077568|ref|XP_002305306.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFS4|NIK1_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1;; (*TAIR) AT5G16000.1 (e_value=0.0) | Symbols: NIK1 | NSP-interacting kinase 1 | chr5:5224264-5227003 FORWARD LENGTH=638;; (*ITAG) Solyc02g089550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45911202-45914547 transcript_region:SL2.40ch02:45911202..45914547- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00043372g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|18399803|ref|NP_565518.1| (e_value=4e-31) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT2G21820.1 (e_value=8e-34) | Symbols: | unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9302983-9303219 REVERSE LENGTH=78;; (*ITAG) Solyc03g046380.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16382951-16383193 transcript_region:SL2.40ch03:16382951..16383193+ functional_description:"Seed maturation protein PM41 (AHRD V1 ***- Q9SWB2_SOYBN)"; NbS00013974g0009.1 protein AED:0.06 eAED:0.08 QI:0|0.76|0.71|1|0.84|0.71|14|0|1540; (*GB) gi|224099783|ref|XP_002311616.1| (e_value=2e-142) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94KE2|TIC_ARATH (e_value=3e-62) Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2;; (*TAIR) AT3G22380.2 (e_value=2e-63) | Symbols: TIC | time for coffee | chr3:7913181-7918967 FORWARD LENGTH=1555;; (*ITAG) Solyc09g075830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62958838-62965734 transcript_region:SL2.40ch09:62958838..62965734+ functional_description:"Time for coffee (AHRD V1 *--- D7L1P0_ARALY)"; NbS00013974g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|116; (*ITAG) Solyc09g059390.2.1 (e_value=3e-28) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00028104g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|225453588|ref|XP_002263524.1| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100262678 [Vitis vinifera];; (*ITAG) Solyc10g009280.2.1 (e_value=7e-48) genomic_reference:SL2.40ch10 gene_region:3267235-3271023 transcript_region:SL2.40ch10:3267235..3271023- go_terms:GO:0003713 functional_description:"Calcium-responsive transcription coactivator (AHRD V1 *--* CREST_RAT); contains Interpro domain(s) IPR007726 SSXT "; GO:0003713 NbS00048273g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|296087695|emb|CBI34951.3| (e_value=7e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G14890.1 (e_value=7e-32) | Symbols: | NHL domain-containing protein | chr5:4818056-4821534 FORWARD LENGTH=754;; (*ITAG) Solyc02g087030.1.1 (e_value=2e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:44154224-44154673 transcript_region:SL2.40ch02:44154224..44154673+ functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"; NbS00017076g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|296; (*GB) gi|317106677|dbj|BAJ53180.1| (e_value=3e-75) JHL18I08.14 [Jatropha curcas];; (*TAIR) AT1G75520.1 (e_value=3e-68) | Symbols: SRS5 | SHI-related sequence 5 | chr1:28351779-28353179 REVERSE LENGTH=346;; (*ITAG) Solyc04g080970.2.1 (e_value=2e-81) genomic_reference:SL2.40ch04 gene_region:62620623-62622236 transcript_region:SL2.40ch04:62620623..62622236- functional_description:"Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00017076g0012.1 protein AED:0.16 eAED:0.16 QI:351|0.83|0.84|1|0.72|0.73|19|179|749; (*GB) gi|255538810|ref|XP_002510470.1| (e_value=0.0) vacuolar proton atpase, putative [Ricinus communis];; (*SWP) sp|Q8AVM5|VPP1_XENLA (e_value=1e-172) V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1;; (*TAIR) AT4G39080.1 (e_value=0.0) | Symbols: VHA-A3 | vacuolar proton ATPase A3 | chr4:18209513-18214752 FORWARD LENGTH=821;; (*ITAG) Solyc07g032080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:34607239-34620262 transcript_region:SL2.40ch07:34607239..34620262+ go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00017076g0015.1 protein AED:0.24 eAED:0.32 QI:0|0|0|1|0.4|0.33|6|0|425; (*GB) gi|113205445|gb|AAW28576.2| (e_value=6e-33) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc00g105750.1.1 (e_value=3e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15950858-15953790 transcript_region:SL2.40ch00:15950858..15953790+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00017076g0014.1 protein AED:0.79 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|65 NbS00062036g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|607; (*GB) gi|255563560|ref|XP_002522782.1| (e_value=1e-81) Paramyosin, putative [Ricinus communis];; (*SWP) sp|Q9FWW5|Y1215_ARATH (e_value=2e-52) WEB family protein At1g12150 OS=Arabidopsis thaliana GN=At1g12150 PE=2 SV=1;; (*TAIR) AT1G12150.1 (e_value=2e-53) | Symbols: | Plant protein of unknown function (DUF827) | chr1:4123530-4125328 REVERSE LENGTH=548;; (*ITAG) Solyc04g015110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5283852-5286177 transcript_region:SL2.40ch04:5283852..5286177+ functional_description:"Myosin heavy chain-like protein (Fragment) (AHRD V1 *--- Q5K5B1_ORYSA); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbC24872723g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|161702915|gb|ABX76298.1| (e_value=2e-118) sexual organ expressed protein [Nicotiana alata];; (*SWP) sp|P58515|SPI2_SOLTU (e_value=1e-32) Serine protease inhibitor 2 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G17860.1 (e_value=4e-20) | Symbols: | Kunitz family trypsin and protease inhibitor protein | chr1:6149343-6149933 FORWARD LENGTH=196;; (*ITAG) Solyc03g019690.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:6639686-6640339 transcript_region:SL2.40ch03:6639686..6640339- go_terms:GO:0004867,GO:0015066 functional_description:"Kunitz-type protease inhibitor (AHRD V1 **** Q3S477_SOLTU); contains Interpro domain(s) IPR002160 Proteinase inhibitor I3, Kunitz legume "; GO:0004867,GO:0015066 NbS00020907g0001.1 protein AED:0.35 eAED:0.36 QI:164|0.85|1|1|0.85|0.75|8|397|332; (*GB) gi|78708888|gb|ABB47863.1| (e_value=2e-96) Chaperone protein dnaJ 13, putative, expressed [Oryza sativa Japonica Group];; (*SWP) sp|Q39079|DNJ13_ARATH (e_value=2e-64) Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2;; (*TAIR) AT2G35720.1 (e_value=2e-65) | Symbols: OWL1 | DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD LENGTH=538;; (*ITAG) Solyc08g078660.2.1 (e_value=2e-99) genomic_reference:SL2.40ch08 gene_region:59591348-59605081 transcript_region:SL2.40ch08:59591348..59605081+ go_terms:GO:0005515 functional_description:"Chaperone protein dnaJ 13 (AHRD V1 ***- B6T7S1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005515 NbS00020907g0007.1 protein AED:0.69 eAED:0.74 QI:0|0|0|0.5|0|0|2|0|79; (*GB) gi|225426989|ref|XP_002270066.1| (e_value=7e-26) PREDICTED: chaperone protein dnaJ 13 [Vitis vinifera];; (*SWP) sp|Q39079|DNJ13_ARATH (e_value=2e-24) Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2;; (*TAIR) AT2G35720.1 (e_value=1e-25) | Symbols: OWL1 | DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD LENGTH=538;; (*ITAG) Solyc08g078660.2.1 (e_value=2e-32) genomic_reference:SL2.40ch08 gene_region:59591348-59605081 transcript_region:SL2.40ch08:59591348..59605081+ go_terms:GO:0005515 functional_description:"Chaperone protein dnaJ 13 (AHRD V1 ***- B6T7S1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005515 NbS00047876g0004.1 protein AED:0.25 eAED:0.25 QI:22|0.66|0.6|0.9|0.88|0.8|10|0|1039; (*GB) gi|296083697|emb|CBI23686.3| (e_value=4e-130) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q24562|U2AF2_DROME (e_value=4e-24) Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster GN=U2af50 PE=2 SV=1;; (*TAIR) AT2G33435.1 (e_value=9e-47) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:14166037-14169492 FORWARD LENGTH=979;; (*ITAG) Solyc09g090420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65285691-65295560 transcript_region:SL2.40ch09:65285691..65295560- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor u2af large subunit (AHRD V1 *-*- Q17H60_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00058991g0002.1 protein AED:0.35 eAED:0.35 QI:87|1|0.66|1|0|0|3|114|337; (*GB) gi|225445424|ref|XP_002285038.1| (e_value=2e-107) PREDICTED: uncharacterized protein LOC100247481 [Vitis vinifera];; (*TAIR) AT3G25910.1 (e_value=1e-75) | Symbols: | Protein of unknown function (DUF1644) | chr3:9489836-9490954 FORWARD LENGTH=372;; (*ITAG) Solyc12g006700.1.1 (e_value=3e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1165391-1166395 transcript_region:SL2.40ch12:1165391..1166395- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbC25369236g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|362; (*GB) gi|224059892|ref|XP_002300009.1| (e_value=8e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=1e-58) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=1e-59) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc01g106160.1.1 (e_value=2e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85861185-85863347 transcript_region:SL2.40ch01:85861185..85863347- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00058031g0002.1 protein AED:0.00 eAED:0.00 QI:207|0.66|0.75|1|0|0|4|190|77; (*GB) gi|187611217|gb|ACD13788.1| (e_value=6e-19) starch synthase V precursor [Solanum tuberosum]; NbS00040096g0014.1 protein AED:0.09 eAED:0.12 QI:0|0.5|0.42|1|0.5|0.71|7|461|900; (*GB) gi|359492369|ref|XP_002284600.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248990 [Vitis vinifera];; (*TAIR) AT1G21651.1 (e_value=0.0) | Symbols: | zinc ion binding | chr1:7601061-7604152 REVERSE LENGTH=811;; (*ITAG) Solyc11g005030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45150-48236 transcript_region:SL2.40ch11:45150..48236- functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AUL0_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00040096g0015.1 protein AED:0.17 eAED:0.17 QI:116|0.74|0.78|0.93|0.83|0.84|32|643|1101; (*GB) gi|302141769|emb|CBI18972.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|D8WUA4|SECA2_ARATH (e_value=0.0) Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1;; (*TAIR) AT1G21650.2 (e_value=0.0) | Symbols: SECA2 | Preprotein translocase SecA family protein | chr1:7592891-7600590 REVERSE LENGTH=1058;; (*ITAG) Solyc11g005020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28149-44175 transcript_region:SL2.40ch11:28149..44175- go_terms:GO:0006886,GO:0016020 functional_description:"Protein translocase subunit secA (AHRD V1 ***- B9GTZ6_POPTR); contains Interpro domain(s) IPR000185 SecA protein "; GO:0006886,GO:0016020 NbS00040096g0016.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|0|0|4|265|99; (*GB) gi|225465010|ref|XP_002264665.1| (e_value=3e-35) PREDICTED: protein KRTCAP2 homolog [Vitis vinifera];; (*TAIR) AT1G77350.2 (e_value=5e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:29070497-29071545 FORWARD LENGTH=122;; (*ITAG) Solyc11g005000.1.1 (e_value=8e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:8301-11298 transcript_region:SL2.40ch11:8301..11298- functional_description:"Keratinocytes-associated protein 2 (AHRD V1 ***- B6SJ34_MAIZE); contains Interpro domain(s) IPR018614 Protein of unknown function KRTCAP2 "; NbS00040096g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|560; (*GB) gi|224082334|ref|XP_002306651.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04086|Y1105_ARATH (e_value=0.0) Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1;; (*TAIR) AT1G11050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3681892-3683769 FORWARD LENGTH=625;; (*ITAG) Solyc01g104050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84290143-84292557 transcript_region:SL2.40ch01:84290143..84292557- go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM41_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00040096g0021.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0|1|0.5|0.66|3|0|205; (*GB) gi|225458581|ref|XP_002282636.1| (e_value=3e-106) PREDICTED: origin recognition complex subunit 2-like [Vitis vinifera];; (*SWP) sp|Q38899|ORC2_ARATH (e_value=2e-87) Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1;; (*TAIR) AT2G37560.2 (e_value=5e-89) | Symbols: ORC2, ATORC2 | origin recognition complex second largest subunit 2 | chr2:15759568-15761116 FORWARD LENGTH=345;; (*ITAG) Solyc06g073510.2.1 (e_value=2e-130) genomic_reference:SL2.40ch06 gene_region:41699563-41703139 transcript_region:SL2.40ch06:41699563..41703139+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 2 (AHRD V1 ***- Q9XFD6_ORYSJ); contains Interpro domain(s) IPR007220 Origin recognition complex subunit 2 "; GO:0042802 NbS00053678g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|1|1|5|0|277; (*GB) gi|356510802|ref|XP_003524123.1| (e_value=9e-141) PREDICTED: SAL1 phosphatase-like [Glycine max];; (*SWP) sp|Q42546|DPNP1_ARATH (e_value=8e-135) SAL1 phosphatase OS=Arabidopsis thaliana GN=SAL1 PE=1 SV=1;; (*TAIR) AT5G63980.1 (e_value=9e-136) | Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 | Inositol monophosphatase family protein | chr5:25609840-25611802 FORWARD LENGTH=407;; (*ITAG) Solyc05g056490.2.1 (e_value=2e-178) genomic_reference:SL2.40ch05 gene_region:64907109-64913076 transcript_region:SL2.40ch05:64907109..64913076- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0008441 NbS00053678g0011.1 protein AED:0.17 eAED:0.17 QI:270|0.75|0.66|1|0.87|0.88|9|196|430; (*GB) gi|225431715|ref|XP_002265166.1| (e_value=0.0) PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial [Vitis vinifera];; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=1e-126) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT5G09300.1 (e_value=0.0) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886797 REVERSE LENGTH=472;; (*ITAG) Solyc05g056480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64903038-64907010 transcript_region:SL2.40ch05:64903038..64907010+ go_terms:GO:0003826 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 **** D6YUM5_WADCW); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003826 NbS00042047g0014.1 protein AED:0.03 eAED:0.03 QI:199|1|0.6|1|0.25|0.2|5|0|255; (*GB) gi|297735929|emb|CBI18705.3| (e_value=1e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G51140.1 (e_value=1e-109) | Symbols: | Protein of unknown function (DUF3353) | chr3:18998182-18999437 FORWARD LENGTH=278;; (*ITAG) Solyc02g062350.2.1 (e_value=5e-164) genomic_reference:SL2.40ch02 gene_region:28534146-28538817 transcript_region:SL2.40ch02:28534146..28538817- go_terms:GO:0010181 functional_description:"Heat shock protein DnaJ domain protein (AHRD V1 **-- D7DZS3_NOSA0)"; GO:0010181 NbS00042047g0013.1 protein AED:0.12 eAED:0.13 QI:0|1|0.76|1|1|1|13|0|1000; (*GB) gi|356540801|ref|XP_003538873.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100802226 [Glycine max];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=5e-87) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT5G66310.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063;; (*ITAG) Solyc02g062330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:28520744-28525737 transcript_region:SL2.40ch02:28520744..28525737- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00042047g0015.1 protein AED:0.19 eAED:0.19 QI:212|1|0.83|1|1|1|6|0|395; (*GB) gi|4827251|dbj|BAA77604.1| (e_value=0.0) plastidic aldolase NPALDP1 [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc02g062340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28530062-28532470 transcript_region:SL2.40ch02:28530062..28532470- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q9SXX4_NICPA); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00042047g0017.1 protein AED:0.45 eAED:0.54 QI:0|0|0.33|1|0|0.33|3|80|115 NbS00009901g0006.1 protein AED:0.22 eAED:0.22 QI:74|0.8|1|1|0.8|0.83|6|394|298; (*GB) gi|388520373|gb|AFK48248.1| (e_value=8e-173) unknown [Lotus japonicus];; (*SWP) sp|Q84TF0|AKRCA_ARATH (e_value=5e-167) Aldo-keto reductase family 4 member C10 OS=Arabidopsis thaliana GN=AKR4C10 PE=1 SV=1;; (*TAIR) AT2G37790.1 (e_value=4e-168) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:15838838-15840752 FORWARD LENGTH=314;; (*ITAG) Solyc09g011240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4573233-4578442 transcript_region:SL2.40ch09:4573233..4578442+ go_terms:GO:0032866,GO:0032867 functional_description:"Reductase 2 (AHRD V1 **** Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00009901g0007.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|113; (*ITAG) Solyc10g049530.1.1 (e_value=8e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00009901g0105.1 protein AED:0.19 eAED:0.29 QI:0|0.33|0.5|1|1|1|4|534|205 NbS00009901g0201.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|181 NbS00009901g0207.1 protein AED:0.19 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|206 NbS00030757g0004.1 protein AED:0.24 eAED:0.24 QI:189|1|1|1|1|1|7|399|437; (*GB) gi|225453238|ref|XP_002265039.1| (e_value=0.0) PREDICTED: protoheme IX farnesyltransferase, mitochondrial [Vitis vinifera];; (*SWP) sp|O64886|COX10_ARATH (e_value=1e-174) Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis thaliana GN=COX10 PE=2 SV=4;; (*TAIR) AT2G44520.1 (e_value=1e-175) | Symbols: COX10 | cytochrome c oxidase 10 | chr2:18379660-18381731 FORWARD LENGTH=431;; (*ITAG) Solyc01g080860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72686531-72695319 transcript_region:SL2.40ch01:72686531..72695319- go_terms:GO:0016021 functional_description:"Protoheme IX farnesyltransferase (AHRD V1 ***- B6TRR8_MAIZE); contains Interpro domain(s) IPR006369 Protohaem IX farnesyltransferase "; GO:0016021 NbS00031329g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|97 NbS00046183g0009.1 protein AED:0.19 eAED:0.19 QI:262|0.75|0.8|1|0.5|0.6|5|497|285; (*GB) gi|224137202|ref|XP_002327067.1| (e_value=4e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=9e-22) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT2G38740.1 (e_value=2e-99) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:16194639-16195995 REVERSE LENGTH=244;; (*ITAG) Solyc08g013840.2.1 (e_value=6e-160) genomic_reference:SL2.40ch08 gene_region:3180472-3183463 transcript_region:SL2.40ch08:3180472..3183463+ go_terms:GO:0005515,GO:0003850 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 (AHRD V1 **-- B2IYD2_NOSP7); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0003850 NbS00061263g0003.1 protein AED:0.31 eAED:0.31 QI:298|0.85|0.87|1|0.14|0.37|8|0|289; (*GB) gi|350538651|ref|NP_001234353.1| (e_value=5e-177) SNF1-related kinase [Solanum lycopersicum];; (*SWP) sp|A2YNT8|SAPK2_ORYSI (e_value=3e-149) Serine/threonine-protein kinase SAPK2 OS=Oryza sativa subsp. indica GN=SAPK2 PE=2 SV=2;; (*TAIR) AT1G78290.3 (e_value=3e-140) | Symbols: | Protein kinase superfamily protein | chr1:29457457-29458909 REVERSE LENGTH=343;; (*ITAG) Solyc04g012160.2.1 (e_value=1e-179) genomic_reference:SL2.40ch04 gene_region:4446264-4449928 transcript_region:SL2.40ch04:4446264..4449928+ go_terms:GO:0006970,GO:0006468 functional_description:"Serine-threonine protein kinase (AHRD V1 ***- Q09VQ1_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006970,GO:0006468 NbS00060685g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|268; (*GB) gi|359497794|ref|XP_003635644.1| (e_value=9e-61) PREDICTED: uncharacterized protein LOC100852909 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=8e-39) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083090.1.1 (e_value=4e-123) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41201725-41202534 transcript_region:SL2.40ch02:41201725..41202534+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00060685g0001.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|218; (*GB) gi|359497469|ref|XP_003635528.1| (e_value=8e-51) PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=6e-29) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083090.1.1 (e_value=6e-128) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41201725-41202534 transcript_region:SL2.40ch02:41201725..41202534+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00060685g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0.33|0.66|1|1|3|18|69 NbS00018642g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.61|1|0.83|0.84|13|0|488; (*GB) gi|294440430|gb|ADE74632.1| (e_value=0.0) aspartic protease 1 [Nicotiana tabacum];; (*SWP) sp|Q42456|ASPR1_ORYSJ (e_value=0.0) Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc01g101240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82818855-82824013 transcript_region:SL2.40ch01:82818855..82824013+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **** ASPRX_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00018833g0004.1 protein AED:0.33 eAED:0.36 QI:0|0.5|0.66|1|0.5|0.66|3|464|71 NbS00018833g0003.1 protein AED:0.38 eAED:0.38 QI:0|0.25|0.2|0.6|0.25|0.6|5|306|84 NbS00024445g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.66|0.75|4|0|319; (*GB) gi|313906952|gb|ADR83568.1| (e_value=8e-143) putative Myb103 transcription factor [Lycium barbarum];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=3e-37) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G56110.1 (e_value=9e-78) | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb domain protein 103 | chr5:22719191-22720664 FORWARD LENGTH=320;; (*ITAG) Solyc10g005760.1.1 (e_value=2e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:612159-614054 transcript_region:SL2.40ch10:612159..614054- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00024445g0004.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.2|1|1|5|0|161; (*GB) gi|225462060|ref|XP_002275924.1| (e_value=1e-19) PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera];; (*TAIR) AT3G13310.1 (e_value=2e-18) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4310827-4311300 REVERSE LENGTH=157;; (*ITAG) Solyc07g065960.1.1 (e_value=7e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64759664-64760149 transcript_region:SL2.40ch07:64759664..64760149- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 ***- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00005837g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|0.75|0.8|5|2|722; (*GB) gi|224078834|ref|XP_002305646.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55G83|ABKC_DICDI (e_value=7e-82) Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1;; (*TAIR) AT1G11390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc03g006660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1233241-1241413 transcript_region:SL2.40ch03:1233241..1241413+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--* ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00026826g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.66|1|0.5|0.66|3|0|161; (*GB) gi|147798859|emb|CAN68046.1| (e_value=3e-60) hypothetical protein VITISV_017723 [Vitis vinifera];; (*SWP) sp|P29675|SF3_HELAN (e_value=3e-30) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT2G39900.1 (e_value=3e-49) | Symbols: | GATA type zinc finger transcription factor family protein | chr2:16659136-16660267 FORWARD LENGTH=200;; (*ITAG) Solyc08g007940.2.1 (e_value=2e-69) genomic_reference:SL2.40ch08 gene_region:2443295-2446883 transcript_region:SL2.40ch08:2443295..2446883+ go_terms:GO:0042802 functional_description:"LIM domain protein 2b (AHRD V1 **-- B1PVT0_TOBAC); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00021058g0002.1 protein AED:0.59 eAED:0.78 QI:0|0.5|0|1|1|1|3|0|470; (*GB) gi|225470340|ref|XP_002267812.1| (e_value=1e-128) PREDICTED: uncharacterized protein LOC100248155 [Vitis vinifera];; (*ITAG) Solyc02g078470.2.1 (e_value=9e-60) genomic_reference:SL2.40ch02 gene_region:37715585-37718968 transcript_region:SL2.40ch02:37715585..37718968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021058g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|380; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=1e-129) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=8e-85) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT5G53750.1 (e_value=1e-89) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc02g078480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00013747g0006.1 protein AED:0.05 eAED:0.05 QI:307|1|0.5|1|1|0.5|2|0|79 NbS00013747g0007.1 protein AED:0.15 eAED:0.15 QI:27|1|0.94|1|0.94|0.94|19|0|714; (*GB) gi|225446449|ref|XP_002277029.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 1A [Vitis vinifera];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=0.0) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=0.0) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00007733g0004.1 protein AED:0.22 eAED:0.22 QI:218|1|1|1|0.85|0.87|8|330|371; (*GB) gi|225427089|ref|XP_002276604.1| (e_value=2e-162) PREDICTED: autophagy protein 5-like [Vitis vinifera];; (*SWP) sp|Q9FFI2|ATG5_ARATH (e_value=7e-147) Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1;; (*TAIR) AT5G17290.1 (e_value=6e-148) | Symbols: ATG5, APG5, ATATG5 | autophagy protein Apg5 family | chr5:5687160-5689821 REVERSE LENGTH=337;; (*ITAG) Solyc02g036380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21379877-21394103 transcript_region:SL2.40ch02:21379877..21394103+ go_terms:GO:0005215 functional_description:"Autophagy protein 5 (AHRD V1 ***- Q3MQ01_MAIZE); contains Interpro domain(s) IPR007239 Autophagy-related protein 5 "; GO:0005215 NbS00052950g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|683; (*GB) gi|359479007|ref|XP_002281519.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248374 [Vitis vinifera];; (*TAIR) AT2G39380.1 (e_value=4e-153) | Symbols: ATEXO70H2, EXO70H2 | exocyst subunit exo70 family protein H2 | chr2:16447096-16449009 REVERSE LENGTH=637;; (*ITAG) Solyc06g005280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:289806-291602 transcript_region:SL2.40ch06:289806..291602+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00006316g0011.1 protein AED:0.11 eAED:0.13 QI:0|0.69|0.57|0.92|0.76|0.71|14|386|844; (*GB) gi|359491950|ref|XP_003634345.1| (e_value=0.0) PREDICTED: cirhin-like [Vitis vinifera];; (*SWP) sp|Q969X6|CIR1A_HUMAN (e_value=6e-38) Cirhin OS=Homo sapiens GN=CIRH1A PE=1 SV=1;; (*TAIR) AT4G07410.1 (e_value=0.0) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:4201465-4205136 REVERSE LENGTH=815;; (*ITAG) Solyc04g077680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60204549-60211710 transcript_region:SL2.40ch04:60204549..60211710+ go_terms:GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00027328g0001.1 protein AED:0.10 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|650; (*GB) gi|359483659|ref|XP_002274224.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q84VG6|PP160_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2;; (*TAIR) AT2G17525.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7624178-7626058 FORWARD LENGTH=626;; (*ITAG) Solyc09g061760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:55904414-55906300 transcript_region:SL2.40ch09:55904414..55906300+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022357g0004.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.27|1|0.8|0.72|11|0|415; (*GB) gi|355329948|dbj|BAL14273.1| (e_value=0.0) FK506-binding protein [Nicotiana tabacum];; (*SWP) sp|Q38931|FKB62_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=0.0) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc09g057660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:45713887-45718078 transcript_region:SL2.40ch09:45713887..45718078- go_terms:GO:0048156 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0048156 NbS00062009g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.4|0.33|0.5|1|1|6|739|384; (*GB) gi|224060110|ref|XP_002300042.1| (e_value=2e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|C1A3Y1|PNP_GEMAT (e_value=2e-24) Polyribonucleotide nucleotidyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=pnp PE=3 SV=1;; (*TAIR) AT5G14580.1 (e_value=7e-98) | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991;; (*ITAG) Solyc02g086600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43834786-43843201 transcript_region:SL2.40ch02:43834786..43843201- go_terms:GO:0003729 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- Q1PVN2_9BACT); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0003729 NbS00000317g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|355; (*GB) gi|356545419|ref|XP_003541140.1| (e_value=2e-134) PREDICTED: probable purine permease 5-like [Glycine max];; (*SWP) sp|Q9ZUH3|PUP5_ARATH (e_value=9e-124) Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2;; (*TAIR) AT2G24220.2 (e_value=7e-125) | Symbols: PUP5 | purine permease 5 | chr2:10300603-10301688 FORWARD LENGTH=361;; (*ITAG) Solyc07g005660.2.1 (e_value=6e-147) genomic_reference:SL2.40ch07 gene_region:536448-539294 transcript_region:SL2.40ch07:536448..539294+ go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00023165g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|156; (*ITAG) Solyc02g080560.1.1 (e_value=4e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39332307-39332603 transcript_region:SL2.40ch02:39332307..39332603- functional_description:"Unknown Protein (AHRD V1)"; NbS00023165g0006.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|0.5|0.66|3|0|164; (*ITAG) Solyc02g080550.1.1 (e_value=3e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39328981-39329289 transcript_region:SL2.40ch02:39328981..39329289- functional_description:"Unknown Protein (AHRD V1)"; NbS00023165g0008.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|394; (*GB) gi|231610|sp|P29790.1|ATPG_TOBAC (e_value=0.0) RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P29790|ATPG_TOBAC (e_value=0.0) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1;; (*TAIR) AT4G04640.1 (e_value=0.0) | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373;; (*ITAG) Solyc02g080540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ go_terms:GO:0030234 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0030234 NbS00031457g0009.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|3|367|120 NbS00031457g0010.1 protein AED:0.06 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|558|984; (*GB) gi|255583160|ref|XP_002532346.1| (e_value=0.0) gamma-tubulin complex component, putative [Ricinus communis];; (*SWP) sp|Q96CW5|GCP3_HUMAN (e_value=2e-56) Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2;; (*TAIR) AT5G06680.1 (e_value=0.0) | Symbols: SPC98, ATGCP3, ATSPC98, GCP3 | spindle pole body component 98 | chr5:2056741-2059369 FORWARD LENGTH=838;; (*ITAG) Solyc09g009140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2480875-2483999 transcript_region:SL2.40ch09:2480875..2483999+ go_terms:GO:0043015 functional_description:"Gamma-tubulin complex component 3 (AHRD V1 **** A8NXM0_COPC7); contains Interpro domain(s) IPR015697 Gamma tubulin complex protein 3 "; GO:0043015 NbS00031457g0011.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|6|0|1070; (*GB) gi|359481979|ref|XP_002277320.2| (e_value=6e-165) PREDICTED: uncharacterized protein LOC100251089 [Vitis vinifera];; (*SWP) sp|O94913|PCF11_HUMAN (e_value=3e-20) Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3;; (*TAIR) AT2G36480.1 (e_value=6e-74) | Symbols: | ENTH/VHS family protein | chr2:15303114-15306274 REVERSE LENGTH=830;; (*ITAG) Solyc09g009120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2454280-2462187 transcript_region:SL2.40ch09:2454280..2462187+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; GO:0005622 NbS00044475g0010.1 protein AED:0.03 eAED:0.04 QI:338|0.8|0.66|1|0.8|0.66|6|445|604; (*GB) gi|224074629|ref|XP_002304401.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45290.2 (e_value=1e-35) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=546;; (*ITAG) Solyc08g075080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56402802-56409281 transcript_region:SL2.40ch08:56402802..56409281+ go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00044475g0008.1 protein AED:0.28 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|361; (*GB) gi|224089615|ref|XP_002308780.1| (e_value=3e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=9e-47) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=5e-62) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc06g051320.2.1 (e_value=3e-57) genomic_reference:SL2.40ch06 gene_region:31052523-31054682 transcript_region:SL2.40ch06:31052523..31054682+ go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00026663g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.9|0.90|1|0.9|0.90|11|0|1241; (*GB) gi|225465113|ref|XP_002270446.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 5-like [Vitis vinifera];; (*SWP) sp|Q9SGG3|ALA5_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 5 OS=Arabidopsis thaliana GN=ALA5 PE=2 SV=1;; (*TAIR) AT1G72700.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:27366910-27371491 FORWARD LENGTH=1228;; (*ITAG) Solyc06g062780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35995146-36001096 transcript_region:SL2.40ch06:35995146..36001096+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00026663g0006.1 protein AED:0.33 eAED:0.33 QI:623|0.88|0.9|1|0.33|0.5|10|229|150; (*GB) gi|356555851|ref|XP_003546243.1| (e_value=1e-59) PREDICTED: uncharacterized protein LOC100800683 [Glycine max];; (*TAIR) AT5G45170.1 (e_value=5e-62) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18270555-18273129 REVERSE LENGTH=372;; (*ITAG) Solyc02g069410.2.1 (e_value=1e-82) genomic_reference:SL2.40ch02 gene_region:33885107-33893316 transcript_region:SL2.40ch02:33885107..33893316- functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 *-*- Q10I42_ORYSJ)"; NbS00010907g0004.1 protein AED:0.15 eAED:0.26 QI:0|0|0|1|0|0|5|0|334; (*GB) gi|209954709|dbj|BAG80545.1| (e_value=1e-110) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q0WW21|U75C1_ARATH (e_value=7e-44) UDP-glycosyltransferase 75C1 OS=Arabidopsis thaliana GN=UGT75C1 PE=2 SV=2;; (*TAIR) AT4G14090.1 (e_value=5e-45) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:8122434-8123804 REVERSE LENGTH=456;; (*ITAG) Solyc12g098600.1.1 (e_value=3e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64390524-64391915 transcript_region:SL2.40ch12:64390524..64391915+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00010907g0003.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|0|0|2|0|70; (*GB) gi|209954709|dbj|BAG80545.1| (e_value=4e-15) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*ITAG) Solyc12g098600.1.1 (e_value=1e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64390524-64391915 transcript_region:SL2.40ch12:64390524..64391915+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00015232g0001.1 protein AED:0.24 eAED:0.24 QI:57|1|1|1|0.5|0.71|7|108|593; (*GB) gi|359482584|ref|XP_002270971.2| (e_value=2e-164) PREDICTED: uncharacterized protein LOC100241217 [Vitis vinifera];; (*TAIR) AT1G53800.1 (e_value=4e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink). | chr1:20081888-20084320 FORWARD LENGTH=568;; (*ITAG) Solyc03g123700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64510534-64516747 transcript_region:SL2.40ch03:64510534..64516747+ go_terms:GO:0004519 functional_description:"NUMOD3 motif family protein expressed (AHRD V1 *--- Q109Y3_ORYSJ); contains Interpro domain(s) IPR003611 Intron-encoded nuclease 2 "; GO:0004519 NbS00023061g0006.1 protein AED:0.68 eAED:0.69 QI:0|0.5|0|0.66|0.5|0.66|3|0|227; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=4e-31) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=6e-18) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=5e-19) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc01g095390.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:78423741-78426862 transcript_region:SL2.40ch01:78423741..78426862+ functional_description:"SKIP interacting protein 7 (Fragment) (AHRD V1 *-*- B8Q893_ORYSI)"; NbS00023061g0007.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|504; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=4e-75) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=1e-29) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G64180.1 (e_value=9e-32) | Symbols: | intracellular protein transport protein USO1-related | chr1:23821640-23824193 FORWARD LENGTH=593;; (*ITAG) Solyc01g095390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78423741-78426862 transcript_region:SL2.40ch01:78423741..78426862+ functional_description:"SKIP interacting protein 7 (Fragment) (AHRD V1 *-*- B8Q893_ORYSI)"; NbS00028136g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|277; (*GB) gi|93115321|gb|ABE98329.1| (e_value=2e-48) SRC2-like protein [Nicotiana benthamiana];; (*TAIR) AT1G09070.1 (e_value=5e-27) | Symbols: SRC2, (AT)SRC2 | soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324;; (*ITAG) Solyc08g028990.1.1 (e_value=2e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:21927524-21928318 transcript_region:SL2.40ch08:21927524..21928318- go_terms:GO:0005515 functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J6_NICBE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0005515 NbS00028136g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|0.66|3|0|284; (*GB) gi|147797908|emb|CAN69464.1| (e_value=7e-116) hypothetical protein VITISV_023045 [Vitis vinifera];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=3e-91) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT3G62730.1 (e_value=4e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23208003-23209436 REVERSE LENGTH=317;; (*ITAG) Solyc09g014310.2.1 (e_value=7e-157) genomic_reference:SL2.40ch09 gene_region:5821687-5823749 transcript_region:SL2.40ch09:5821687..5823749+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00028136g0013.1 protein AED:0.25 eAED:0.25 QI:168|1|1|1|1|1|3|0|111; (*GB) gi|81076822|gb|ABB55398.1| (e_value=6e-32) 40S ribosomal protein S10-like [Solanum tuberosum];; (*SWP) sp|Q9FFS8|RS102_ARATH (e_value=9e-29) 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1;; (*TAIR) AT5G41520.2 (e_value=3e-30) | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr5:16609377-16610203 REVERSE LENGTH=134;; (*ITAG) Solyc01g099670.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:81603519-81605647 transcript_region:SL2.40ch01:81603519..81605647- functional_description:"40S ribosomal protein S10-like (AHRD V1 ***- Q2XTB2_SOLTU); contains Interpro domain(s) IPR005326 Plectin/S10, N-terminal "; NbS00056501g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|22001520|sp|P58905.1|AMT11_SOLLC (e_value=0.0) RecName: Full=Ammonium transporter 1 member 1; AltName: Full=LeAMT1;1;; (*SWP) sp|P58905|AMT11_SOLLC (e_value=0.0) Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1;; (*TAIR) AT4G13510.1 (e_value=0.0) | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter 1;1 | chr4:7858220-7859725 FORWARD LENGTH=501;; (*ITAG) Solyc09g090730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65513401-65514873 transcript_region:SL2.40ch09:65513401..65514873- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** Q09J80_9ROSI); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00034827g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|18654477|gb|AAL35363.2|AF442385_1 (e_value=4e-42) thioredoxin peroxidase [Capsicum annuum];; (*SWP) sp|Q9XEX2|PRX2B_ARATH (e_value=2e-39) Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1;; (*TAIR) AT1G65980.1 (e_value=2e-40) | Symbols: TPX1 | thioredoxin-dependent peroxidase 1 | chr1:24559524-24560753 REVERSE LENGTH=162;; (*ITAG) Solyc07g020860.2.1 (e_value=2e-44) genomic_reference:SL2.40ch07 gene_region:14295272-14300912 transcript_region:SL2.40ch07:14295272..14300912+ go_terms:GO:0008379 functional_description:"Peroxiredoxin (AHRD V1 **-- D2D300_GOSHI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0008379 NbS00009033g0002.1 protein AED:0.14 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|126; (*ITAG) Solyc01g066710.2.1 (e_value=9e-35) genomic_reference:SL2.40ch01 gene_region:67263535-67264166 transcript_region:SL2.40ch01:67263535..67264166- functional_description:"Unknown Protein (AHRD V1)"; NbS00012824g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|610; (*GB) gi|350539565|ref|NP_001233936.1| (e_value=0.0) Lyk10 precursor [Solanum lycopersicum];; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=4e-31) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT2G33580.1 (e_value=3e-61) | Symbols: | Protein kinase superfamily protein | chr2:14219848-14221842 REVERSE LENGTH=664;; (*ITAG) Solyc02g065520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31264977-31266830 transcript_region:SL2.40ch02:31264977..31266830+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase 5 (AHRD V1 *-*- RLK5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012824g0020.1 protein AED:0.08 eAED:0.15 QI:0|0|0|1|0.25|0.2|5|0|566; (*GB) gi|356551072|ref|XP_003543902.1| (e_value=2e-151) PREDICTED: uncharacterized protein LOC100814731 [Glycine max];; (*TAIR) AT5G15900.1 (e_value=3e-133) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089670.2.1 (e_value=4e-170) genomic_reference:SL2.40ch02 gene_region:46007409-46009631 transcript_region:SL2.40ch02:46007409..46009631+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00012824g0016.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0.5|0|3|0|544; (*GB) gi|225430876|ref|XP_002269506.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66631-like [Vitis vinifera];; (*SWP) sp|B3H4P1|PP450_ARATH (e_value=2e-165) Pentatricopeptide repeat-containing protein At5g66631 OS=Arabidopsis thaliana GN=At5g66631 PE=2 SV=1;; (*TAIR) AT5G66631.1 (e_value=1e-166) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26596207-26598192 FORWARD LENGTH=661;; (*ITAG) Solyc02g065510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31261193-31263154 transcript_region:SL2.40ch02:31261193..31263154+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KH82_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012824g0018.1 protein AED:0.00 eAED:0.00 QI:15|1|1|1|0.5|0.33|3|534|356; (*GB) gi|225430862|ref|XP_002269182.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase-like 2-like [Vitis vinifera];; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=8e-163) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=6e-164) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc02g065530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31269461-31270781 transcript_region:SL2.40ch02:31269461..31270781- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00012824g0005.1 protein AED:0.28 eAED:0.28 QI:306|0.5|0.66|1|0|0.33|3|62|220; (*GB) gi|224808570|gb|ACN63363.1| (e_value=1e-102) RING zinc finger protein 1 [Capsicum annuum];; (*SWP) sp|Q09463|RNF5_CAEEL (e_value=4e-28) RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1;; (*TAIR) AT1G19310.1 (e_value=1e-57) | Symbols: | RING/U-box superfamily protein | chr1:6676424-6677104 REVERSE LENGTH=226;; (*ITAG) Solyc02g065540.1.1 (e_value=4e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31274287-31274952 transcript_region:SL2.40ch02:31274287..31274952- go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 ***- B6TLS1_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012824g0008.1 protein AED:0.39 eAED:0.39 QI:16|0.33|0.25|0.5|1|1|4|0|177 NbS00024222g0008.1 protein AED:0.12 eAED:0.13 QI:0|0.81|0.5|1|1|1|12|0|1818; (*GB) gi|240254462|ref|NP_179241.4| (e_value=0.0) DNA binding / nucleic acid binding / protein binding / zinc ion binding protein [Arabidopsis thaliana];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=0.0) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46217108-46227554 transcript_region:SL2.40ch11:46217108..46227554+ go_terms:GO:0005634,GO:0008270 functional_description:"Novel protein containing a PHD-finger domain (Fragment) (AHRD V1 *--- Q07G27_XENTR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00024222g0011.1 protein AED:0.10 eAED:0.15 QI:0|0|0.25|1|0.33|0.25|4|671|691; (*GB) gi|359478743|ref|XP_002282912.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SJZ3|PP169_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1;; (*TAIR) AT2G22410.1 (e_value=0.0) | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681;; (*ITAG) Solyc11g062250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46236463-46238538 transcript_region:SL2.40ch11:46236463..46238538+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LE02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003071g0008.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|13492674|gb|AAK28303.1|AF346431_1 (e_value=5e-103) phenylpropanoid:glucosyltransferase 1, partial [Nicotiana tabacum];; (*SWP) sp|Q8W491|U73B3_ARATH (e_value=2e-67) UDP-glycosyltransferase 73B3 OS=Arabidopsis thaliana GN=UGT73B3 PE=2 SV=1;; (*TAIR) AT4G34131.1 (e_value=1e-68) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=9e-96) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00003071g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|1685005|gb|AAB36653.1| (e_value=1e-63) immediate-early salicylate-induced glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=2e-32) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT4G34135.1 (e_value=3e-32) | Symbols: UGT73B2 | UDP-glucosyltransferase 73B2 | chr4:16345476-16347016 REVERSE LENGTH=483;; (*ITAG) Solyc01g107820.2.1 (e_value=1e-62) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00003071g0007.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|381; (*GB) gi|1685003|gb|AAB36652.1| (e_value=0.0) immediate-early salicylate-induced glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=8e-159) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34135.1 (e_value=2e-150) | Symbols: UGT73B2 | UDP-glucosyltransferase 73B2 | chr4:16345476-16347016 REVERSE LENGTH=483;; (*ITAG) Solyc01g107820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00003071g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|476; (*GB) gi|1685005|gb|AAB36653.1| (e_value=0.0) immediate-early salicylate-induced glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8H0F2|ANGT_GENTR (e_value=0.0) Anthocyanin 3'-O-beta-glucosyltransferase OS=Gentiana triflora PE=1 SV=1;; (*TAIR) AT4G34131.1 (e_value=0.0) | Symbols: UGT73B3 | UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481;; (*ITAG) Solyc01g107820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86993487-86995355 transcript_region:SL2.40ch01:86993487..86995355- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00035810g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.57|0.37|1|1|1|8|1058|460; (*GB) gi|350538763|ref|NP_001234870.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=3e-81) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G37440.1 (e_value=2e-109) | Symbols: | DNAse I-like superfamily protein | chr2:15719230-15721885 FORWARD LENGTH=479;; (*ITAG) Solyc02g087430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44457106-44459778 transcript_region:SL2.40ch02:44457106..44459778- go_terms:GO:0004445 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004445 NbS00035810g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|349; (*GB) gi|359491397|ref|XP_002282158.2| (e_value=4e-129) PREDICTED: WD repeat-containing protein 85 isoform 3 [Vitis vinifera];; (*SWP) sp|Q55C80|WDR85_DICDI (e_value=9e-40) WD repeat-containing protein 85 homolog OS=Dictyostelium discoideum GN=wdr85 PE=3 SV=1;; (*TAIR) AT5G63010.1 (e_value=2e-110) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:25281739-25282967 FORWARD LENGTH=343;; (*ITAG) Solyc05g012320.1.1 (e_value=1e-124) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5585354-5586434 transcript_region:SL2.40ch05:5585354..5586434- go_terms:GO:0000166 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MND7_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00008051g0011.1 protein AED:0.42 eAED:0.42 QI:58|1|0.5|1|1|1|2|0|172; (*ITAG) Solyc12g013540.1.1 (e_value=2e-94) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4393942-4396738 transcript_region:SL2.40ch12:4393942..4396738+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014411g0015.1 protein AED:0.15 eAED:0.16 QI:558|0.90|0.91|1|0.27|0.41|12|831|240; (*GB) gi|291482264|emb|CBK55654.1| (e_value=2e-101) sulphate transporter [Astragalus racemosus];; (*SWP) sp|Q9LW86|SUT34_ARATH (e_value=3e-99) Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1;; (*TAIR) AT3G15990.1 (e_value=2e-100) | Symbols: SULTR3;4 | sulfate transporter 3;4 | chr3:5427081-5430679 FORWARD LENGTH=653;; (*ITAG) Solyc03g120250.2.1 (e_value=2e-95) genomic_reference:SL2.40ch03 gene_region:62751314-62755593 transcript_region:SL2.40ch03:62751314..62755593- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00014411g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.66|1|1|3|0|276; (*GB) gi|225442665|ref|XP_002279835.1| (e_value=6e-113) PREDICTED: uncharacterized protein LOC100244623 [Vitis vinifera];; (*TAIR) AT3G24490.1 (e_value=8e-65) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr3:8911022-8912023 FORWARD LENGTH=333;; (*ITAG) Solyc12g043090.1.1 (e_value=5e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44199930-44201057 transcript_region:SL2.40ch12:44199930..44201057+ functional_description:"Transcription factor (AHRD V1 *--- D7L9U5_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00014411g0027.1 protein AED:0.31 eAED:0.35 QI:33|0.11|0|1|0.44|0.5|10|0|763; (*GB) gi|255562613|ref|XP_002522312.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*TAIR) AT3G50590.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00014411g0036.1 protein AED:0.22 eAED:0.22 QI:406|0.87|0.92|1|0.83|0.88|25|199|921; (*GB) gi|297743300|emb|CBI36167.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C827|COB22_ARATH (e_value=0.0) Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1;; (*TAIR) AT1G52360.1 (e_value=0.0) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc12g043000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44043014-44056386 transcript_region:SL2.40ch12:44043014..44056386- go_terms:GO:0030117 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- Q0CXS2_ASPTN); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0030117 NbS00014411g0038.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0|1|1|1|3|0|313; (*GB) gi|359497319|ref|XP_002268917.2| (e_value=3e-48) PREDICTED: uncharacterized protein LOC100256691, partial [Vitis vinifera];; (*TAIR) AT4G37080.3 (e_value=9e-24) | Symbols: | Protein of unknown function, DUF547 | chr4:17473719-17476716 FORWARD LENGTH=610;; (*ITAG) Solyc02g090580.2.1 (e_value=4e-130) genomic_reference:SL2.40ch02 gene_region:46702603-46706286 transcript_region:SL2.40ch02:46702603..46706286- functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00014411g0041.1 protein AED:0.27 eAED:0.29 QI:284|0.25|0.11|0.88|0.75|0.66|9|0|684; (*GB) gi|225442663|ref|XP_002279821.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Vitis vinifera];; (*SWP) sp|Q9LW84|PP236_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1;; (*TAIR) AT3G16010.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:5434142-5436244 FORWARD LENGTH=642;; (*ITAG) Solyc12g043100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44204386-44207375 transcript_region:SL2.40ch12:44204386..44207375- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4Z8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014411g0031.1 protein AED:0.35 eAED:0.35 QI:898|0.5|0.33|0.66|0.5|0.66|3|0|181; (*GB) gi|388496124|gb|AFK36128.1| (e_value=4e-79) unknown [Lotus japonicus];; (*SWP) sp|Q55E69|SYS1_DICDI (e_value=3e-32) Protein SYS1 homolog OS=Dictyostelium discoideum GN=sys1 PE=3 SV=1;; (*TAIR) AT1G79990.1 (e_value=2e-64) | Symbols: | structural molecules | chr1:30084522-30091949 FORWARD LENGTH=1135;; (*ITAG) Solyc03g120240.2.1 (e_value=7e-83) genomic_reference:SL2.40ch03 gene_region:62746908-62751403 transcript_region:SL2.40ch03:62746908..62751403+ go_terms:GO:0005515 functional_description:"SYS1 homolog (AHRD V1 ***- C1BHJ4_ONCMY); contains Interpro domain(s) IPR019185 Integral membrane protein SYS1-related "; GO:0005515 NbS00014411g0037.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.5|1|0.66|1|4|0|195; (*GB) gi|224094414|ref|XP_002310156.1| (e_value=1e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT4G37080.3 (e_value=1e-88) | Symbols: | Protein of unknown function, DUF547 | chr4:17473719-17476716 FORWARD LENGTH=610;; (*ITAG) Solyc02g090580.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:46702603-46706286 transcript_region:SL2.40ch02:46702603..46706286- functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00014411g0039.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|0|0|2|0|59 NbS00016237g0004.1 protein AED:0.32 eAED:0.32 QI:374|1|1|1|1|1|6|420|184; (*GB) gi|82621166|gb|ABB86271.1| (e_value=4e-98) adenine phosphoribosyltransferase-like [Solanum tuberosum];; (*SWP) sp|P31166|APT1_ARATH (e_value=1e-87) Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2;; (*TAIR) AT1G27450.1 (e_value=8e-89) | Symbols: APT1, ATAPT1 | adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243;; (*ITAG) Solyc04g077970.2.1 (e_value=3e-99) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00002552g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|1|0|0.2|5|0|343; (*GB) gi|225460935|ref|XP_002277934.1| (e_value=4e-107) PREDICTED: GDSL esterase/lipase At5g55050 [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=5e-94) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=4e-95) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064730.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63980703-63984441 transcript_region:SL2.40ch07:63980703..63984441+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00002552g0102.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|112 NbS00002552g0107.1 protein AED:0.29 eAED:0.54 QI:30|0|0|1|0|0|3|0|229 NbS00046720g0007.1 protein AED:0.29 eAED:0.29 QI:373|0.83|0.71|1|0.83|0.71|7|0|322; (*GB) gi|255561100|ref|XP_002521562.1| (e_value=6e-163) alpha/beta hydrolase, putative [Ricinus communis];; (*SWP) sp|P19076|DMPD_PSEUF (e_value=2e-16) 2-hydroxymuconate semialdehyde hydrolase OS=Pseudomonas sp. (strain CF600) GN=dmpD PE=3 SV=1;; (*TAIR) AT4G36530.2 (e_value=2e-147) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17240120-17241770 REVERSE LENGTH=378;; (*ITAG) Solyc02g062610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28904287-28909252 transcript_region:SL2.40ch02:28904287..28909252- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MBG9_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00046720g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|528; (*GB) gi|147860004|emb|CAN81045.1| (e_value=7e-139) hypothetical protein VITISV_006763 [Vitis vinifera];; (*SWP) sp|Q9LYU9|PP378_ARATH (e_value=1e-89) Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1;; (*TAIR) AT5G13270.1 (e_value=9e-91) | Symbols: RARE1 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4246954-4249212 REVERSE LENGTH=752;; (*ITAG) Solyc09g015370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:8609967-8612054 transcript_region:SL2.40ch09:8609967..8612054+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00008792g0005.1 protein AED:0.17 eAED:0.19 QI:0|0.33|0.25|1|0|0|4|281|608; (*GB) gi|350538029|ref|NP_001234835.1| (e_value=0.0) polygalacturonase-1 non-catalytic subunit beta precursor [Solanum lycopersicum];; (*SWP) sp|Q40161|GP1_SOLLC (e_value=0.0) Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1;; (*TAIR) AT1G70370.2 (e_value=0.0) | Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626;; (*ITAG) Solyc05g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:402750-405238 transcript_region:SL2.40ch05:402750..405238+ go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- C1PI44_ARATH); contains Interpro domain(s) IPR004873 BURP "; GO:0004650 NbS00018804g0015.1 protein AED:0.32 eAED:0.36 QI:0|0.33|0.25|1|1|1|4|0|257; (*GB) gi|359495755|ref|XP_002267846.2| (e_value=6e-56) PREDICTED: ycf20-like protein [Vitis vinifera];; (*SWP) sp|O80813|YC20L_ARATH (e_value=3e-41) Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2;; (*TAIR) AT1G65420.1 (e_value=2e-42) | Symbols: NPQ7 | Protein of unknown function (DUF565) | chr1:24297669-24298374 REVERSE LENGTH=197;; (*ITAG) Solyc03g063060.2.1 (e_value=3e-90) genomic_reference:SL2.40ch03 gene_region:30456583-30465240 transcript_region:SL2.40ch03:30456583..30465240+ functional_description:"Ycf20-like protein (AHRD V1 ***- YC20L_ARATH); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00018804g0018.1 protein AED:0.05 eAED:0.05 QI:59|1|1|1|0.88|0.9|10|348|883; (*GB) gi|255580219|ref|XP_002530940.1| (e_value=0.0) pumilio, putative [Ricinus communis];; (*SWP) sp|Q9SS47|PUM4_ARATH (e_value=0.0) Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2;; (*TAIR) AT3G10360.1 (e_value=0.0) | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3211276-3215144 REVERSE LENGTH=1003;; (*ITAG) Solyc11g008490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2668081-2673243 transcript_region:SL2.40ch11:2668081..2673243+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio-like (AHRD V1 *-*- Q6K9R1_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00018804g0019.1 protein AED:0.23 eAED:0.66 QI:0|0|0|1|0|0|2|0|61 NbS00017337g0004.1 protein AED:0.37 eAED:0.61 QI:0|0|0|1|1|1|2|0|189; (*GB) gi|225441803|ref|XP_002277885.1| (e_value=5e-17) PREDICTED: uncharacterized protein LOC100250289 [Vitis vinifera];; (*TAIR) AT3G57500.1 (e_value=3e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21281980-21282351 FORWARD LENGTH=123;; (*ITAG) Solyc04g015540.1.1 (e_value=9e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:5774950-5775312 transcript_region:SL2.40ch04:5774950..5775312- functional_description:"Unknown Protein (AHRD V1)"; NbS00017337g0005.1 protein AED:0.20 eAED:0.21 QI:112|0.66|0.25|1|0|0.25|4|963|76 NbS00017337g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|310; (*GB) gi|357438275|ref|XP_003589413.1| (e_value=2e-12) hypothetical protein MTR_1g023970 [Medicago truncatula];; (*ITAG) Solyc08g048060.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37762313-37763576 transcript_region:SL2.40ch08:37762313..37763576- functional_description:"Unknown Protein (AHRD V1)"; NbS00003980g0003.1 protein AED:0.24 eAED:0.24 QI:267|1|1|1|1|1|11|31|559; (*GB) gi|225458968|ref|XP_002285560.1| (e_value=0.0) PREDICTED: xylulose kinase [Vitis vinifera];; (*SWP) sp|Q3SYZ6|XYLB_BOVIN (e_value=1e-153) Xylulose kinase OS=Bos taurus GN=XYLB PE=2 SV=1;; (*TAIR) AT5G49650.1 (e_value=0.0) | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152898-20155574 FORWARD LENGTH=558;; (*ITAG) Solyc04g077040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59592018-59597624 transcript_region:SL2.40ch04:59592018..59597624- go_terms:GO:0004856 functional_description:"Xylulose kinase (AHRD V1 ***- D7MPD2_ARALY); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0004856 NbS00016243g0001.1 protein AED:0.17 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225444185|ref|XP_002269497.1| (e_value=2e-51) PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera];; (*SWP) sp|P10975|NLTPC_RICCO (e_value=3e-48) Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2;; (*TAIR) AT3G51590.1 (e_value=1e-19) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00016243g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.83|1|0.4|0.5|6|349|915; (*GB) gi|75104359|sp|Q5BQN5.1|WAP_SOLLC (e_value=0.0) RecName: Full=WPP domain-associated protein;; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=0.0) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT2G34730.1 (e_value=3e-80) | Symbols: | myosin heavy chain-related | chr2:14654611-14657443 FORWARD LENGTH=825;; (*ITAG) Solyc02g024000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15419890-15424604 transcript_region:SL2.40ch02:15419890..15424604- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00016243g0102.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|150 NbS00016243g0108.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|1|1|3|0|316 NbS00016243g0109.1 protein AED:0.38 eAED:0.38 QI:152|1|1|1|0.25|0.33|9|0|331 NbS00016243g0202.1 protein AED:0.05 eAED:0.06 QI:154|0.66|0.57|1|0.66|0.42|7|0|928 NbS00016243g0203.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|265 NbS00016243g0208.1 protein AED:0.10 eAED:0.19 QI:0|0|0|1|0|0|2|0|143 NbS00027410g0009.1 protein AED:0.04 eAED:0.04 QI:159|0|0.66|0.66|0|0.33|3|330|162; (*GB) gi|242081241|ref|XP_002445389.1| (e_value=5e-47) hypothetical protein SORBIDRAFT_07g015050 [Sorghum bicolor];; (*TAIR) AT5G38060.1 (e_value=1e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:15189490-15189964 FORWARD LENGTH=134;; (*ITAG) Solyc02g063300.2.1 (e_value=2e-80) genomic_reference:SL2.40ch02 gene_region:29942317-29945540 transcript_region:SL2.40ch02:29942317..29945540+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027410g0014.1 protein AED:0.20 eAED:0.20 QI:110|0.5|0.33|0.66|1|1|3|0|104 NbS00027410g0011.1 protein AED:0.35 eAED:0.35 QI:353|1|1|1|1|1|3|390|192; (*GB) gi|224065218|ref|XP_002301722.1| (e_value=5e-110) silencing group A protein [Populus trichocarpa];; (*SWP) sp|Q9LS09|ASF1B_ARATH (e_value=1e-100) Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1;; (*TAIR) AT5G38110.1 (e_value=1e-101) | Symbols: SGA1, SGA01, ASF1B | anti- silencing function 1b | chr5:15208643-15210064 FORWARD LENGTH=218;; (*ITAG) Solyc02g091110.2.1 (e_value=1e-118) genomic_reference:SL2.40ch02 gene_region:47097884-47100605 transcript_region:SL2.40ch02:47097884..47100605- go_terms:GO:0042393 functional_description:"Histone chaperone ASF1-like protein (AHRD V1 **** D0NV04_PHYIN); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00027410g0008.1 protein AED:0.45 eAED:0.45 QI:0|0.5|0.57|0.85|1|0.85|7|0|316; (*GB) gi|225462811|ref|XP_002267248.1| (e_value=2e-25) PREDICTED: uncharacterized protein LOC100266821 [Vitis vinifera];; (*TAIR) AT1G60640.2 (e_value=8e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:22337534-22339513 REVERSE LENGTH=340;; (*ITAG) Solyc02g063280.2.1 (e_value=8e-66) genomic_reference:SL2.40ch02 gene_region:29931694-29934377 transcript_region:SL2.40ch02:29931694..29934377+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019682g0003.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=1e-84) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G65870.1 (e_value=2e-61) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189;; (*ITAG) Solyc10g055190.1.1 (e_value=5e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51917042-51917611 transcript_region:SL2.40ch10:51917042..51917611+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YQZ7_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00019682g0007.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|1|1|2|0|112; (*ITAG) Solyc08g048200.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:38280858-38282373 transcript_region:SL2.40ch08:38280858..38282373+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00019682g0012.1 protein AED:0.51 eAED:0.53 QI:0|0|0|1|0|0.5|2|0|62; (*ITAG) Solyc12g062880.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019682g0010.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|153; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019682g0011.1 protein AED:0.38 eAED:0.43 QI:0|0|0|1|0|0|4|0|148; (*ITAG) Solyc01g059760.1.1 (e_value=5e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00008343g0002.1 protein AED:0.10 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|97; (*ITAG) Solyc02g080450.1.1 (e_value=8e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39240054-39240401 transcript_region:SL2.40ch02:39240054..39240401+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013824g0006.1 protein AED:0.42 eAED:0.46 QI:0|0.66|0.71|1|0.83|0.85|7|346|123; (*GB) gi|225443558|ref|XP_002277729.1| (e_value=3e-21) PREDICTED: 28 kDa heat- and acid-stable phosphoprotein isoform 1 [Vitis vinifera];; (*TAIR) AT5G46020.1 (e_value=1e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: Casein kinase substrate, phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18663075-18664629 REVERSE LENGTH=164;; (*ITAG) Solyc02g077410.2.1 (e_value=5e-25) genomic_reference:SL2.40ch02 gene_region:36930997-36935490 transcript_region:SL2.40ch02:36930997..36935490- functional_description:"heat-and acid-stable phosphoprotein (AHRD V1 *-*- B5X267_SALSA); contains Interpro domain(s) IPR019380 Casein kinase substrate, phosphoprotein PP28 "; NbS00015402g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.64|0.4|0.93|1|1|15|0|946; (*GB) gi|359477548|ref|XP_002279154.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261336 [Vitis vinifera];; (*SWP) sp|A1Z9E2|LIN54_DROME (e_value=3e-19) Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1 SV=1;; (*TAIR) AT4G14770.1 (e_value=5e-110) | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2 | chr4:8481522-8484825 REVERSE LENGTH=674;; (*ITAG) Solyc09g082500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63614809-63621319 transcript_region:SL2.40ch09:63614809..63621319+ go_terms:GO:0003700 functional_description:"Tesmin/TSO1-like CXC domain containing protein expressed (AHRD V1 *--- Q10G99_ORYSJ); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; GO:0003700 NbS00001508g0011.1 protein AED:0.15 eAED:0.15 QI:232|0.8|0.72|1|0.7|0.63|11|196|606; (*GB) gi|297734977|emb|CBI17339.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MBA3|RAD17_ARATH (e_value=1e-159) Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1;; (*TAIR) AT5G66130.1 (e_value=9e-161) | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 | chr5:26434236-26437091 FORWARD LENGTH=599;; (*ITAG) Solyc02g083600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41525867-41532585 transcript_region:SL2.40ch02:41525867..41532585+ go_terms:GO:0005634,GO:0017111 functional_description:"Replication factor C large subunit (AHRD V1 *--- D4GSN1_HALVD); contains Interpro domain(s) IPR004582 Checkpoint protein Rad24 "; GO:0005634,GO:0017111 NbS00001508g0001.1 protein AED:0.06 eAED:0.06 QI:230|0.85|0.75|1|1|1|8|371|414; (*GB) gi|350539107|ref|NP_001233863.1| (e_value=0.0) dehydroquinate synthase [Solanum lycopersicum];; (*SWP) sp|B8GPV3|AROB_THISH (e_value=9e-131) 3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1;; (*TAIR) AT5G66120.2 (e_value=0.0) | Symbols: | 3-dehydroquinate synthase, putative | chr5:26431516-26433649 REVERSE LENGTH=442;; (*ITAG) Solyc02g083590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41515715-41520837 transcript_region:SL2.40ch02:41515715..41520837- go_terms:GO:0008797 functional_description:"Dehydroquinate synthase (AHRD V1 ***- Q8RU74_SOLLC); contains Interpro domain(s) IPR016037 3-dehydroquinate synthase AroB, subgroup "; GO:0008797 NbS00001508g0014.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.75|1|1|1|4|0|611; (*GB) gi|255577526|ref|XP_002529641.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51290.2 (e_value=3e-167) | Symbols: | Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) | chr3:19039980-19044215 FORWARD LENGTH=798;; (*ITAG) Solyc02g083610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41533936-41536777 transcript_region:SL2.40ch02:41533936..41536777- go_terms:GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00001508g0125.1 protein AED:0.19 eAED:0.19 QI:191|0.87|0.88|1|0.87|0.77|9|217|295 NbS00001508g0126.1 protein AED:0.05 eAED:0.08 QI:0|0.75|0.6|1|0.75|0.6|5|0|522 NbS00001508g0115.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|1|1|3|0|357 NbS00001508g0116.1 protein AED:0.13 eAED:0.13 QI:1520|0.84|0.96|0.96|0.80|0.70|27|232|494 NbS00001508g0121.1 protein AED:0.18 eAED:0.18 QI:201|1|1|1|0.5|0.66|3|420|89 NbS00001508g0128.1 protein AED:0.21 eAED:0.22 QI:0|0.76|0.71|0.92|0.84|0.78|14|0|1239 NbS00046336g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|215; (*GB) gi|359478224|ref|XP_003632089.1| (e_value=9e-85) PREDICTED: cytochrome P450 76C1-like [Vitis vinifera];; (*SWP) sp|O64637|C76C2_ARATH (e_value=2e-53) Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1;; (*TAIR) AT4G12310.1 (e_value=1e-70) | Symbols: CYP706A5 | cytochrome P450, family 706, subfamily A, polypeptide 5 | chr4:7310598-7312522 REVERSE LENGTH=520;; (*ITAG) Solyc08g079420.2.1 (e_value=1e-109) genomic_reference:SL2.40ch08 gene_region:60118494-60120898 transcript_region:SL2.40ch08:60118494..60120898+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00046336g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|262192729|gb|ACY30434.1| (e_value=5e-74) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q8L9T5|ATL2_ARATH (e_value=5e-47) RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2;; (*TAIR) AT3G16720.1 (e_value=4e-48) | Symbols: ATL2, TL2 | TOXICOS EN LEVADURA 2 | chr3:5692880-5693794 FORWARD LENGTH=304;; (*ITAG) Solyc01g066430.2.1 (e_value=3e-109) genomic_reference:SL2.40ch01 gene_region:66714715-66716016 transcript_region:SL2.40ch01:66714715..66716016- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00025523g0004.1 protein AED:0.39 eAED:0.39 QI:9|1|0.33|1|1|0.66|3|0|73; (*GB) gi|255557651|ref|XP_002519855.1| (e_value=5e-35) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT4G19040.1 (e_value=8e-36) | Symbols: EDR2 | ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=718;; (*ITAG) Solyc12g096050.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63462666-63475970 transcript_region:SL2.40ch12:63462666..63475970- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00050187g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.6|1|1|1|5|0|405; (*GB) gi|350535863|ref|NP_001234473.1| (e_value=0.0) (1-4)-beta-mannan endohydrolase precursor [Solanum lycopersicum];; (*SWP) sp|Q6YM50|MAN5_SOLLC (e_value=0.0) Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=1e-154) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc06g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36573747-36576564 transcript_region:SL2.40ch06:36573747..36576564+ go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- D2S259_HALTV); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00003459g0006.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|541; (*GB) gi|225433680|ref|XP_002265738.1| (e_value=1e-159) PREDICTED: uncharacterized protein LOC100266927 [Vitis vinifera];; (*TAIR) AT5G62990.1 (e_value=1e-139) | Symbols: emb1692 | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:25277828-25279312 FORWARD LENGTH=494;; (*ITAG) Solyc10g045490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:29623054-29624472 transcript_region:SL2.40ch10:29623054..29624472+ go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00061782g0001.1 protein AED:0.00 eAED:0.03 QI:53|1|0.66|1|0|0.33|3|703|400; (*GB) gi|225424693|ref|XP_002263653.1| (e_value=3e-122) PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera];; (*SWP) sp|Q8CCF0|PRP31_MOUSE (e_value=1e-57) U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3;; (*TAIR) AT1G60170.1 (e_value=2e-105) | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485;; (*ITAG) Solyc08g078430.2.1 (e_value=1e-136) genomic_reference:SL2.40ch08 gene_region:59406043-59410273 transcript_region:SL2.40ch08:59406043..59410273- go_terms:GO:0005515,GO:0043021 functional_description:"Pre-mRNA processing ribonucleoprotein binding region-containing protein (AHRD V1 **-* A7AUH1_BABBO); contains Interpro domain(s) IPR019175 Prp31 C-terminal "; GO:0005515,GO:0043021 NbS00059742g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|514; (*GB) gi|225444133|ref|XP_002268281.1| (e_value=3e-170) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-124) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20820.1 (e_value=7e-155) | Symbols: | FAD-binding Berberine family protein | chr4:11150160-11151758 FORWARD LENGTH=532;; (*ITAG) Solyc02g022860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:14975134-14976711 transcript_region:SL2.40ch02:14975134..14976711+ go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFI0_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00019443g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.85|0.75|8|646|499; (*GB) gi|255538254|ref|XP_002510192.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|Q3EDL4|Y1154_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2;; (*TAIR) AT4G02630.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:1151683-1153161 FORWARD LENGTH=492;; (*ITAG) Solyc12g088750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62445460-62448701 transcript_region:SL2.40ch12:62445460..62448701+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q0WPA7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00033640g0007.1 protein AED:0.37 eAED:0.37 QI:32|0.57|0.5|0.75|0.42|0.62|8|0|338; (*GB) gi|357447557|ref|XP_003594054.1| (e_value=2e-131) Somatic embryogenesis receptor kinase [Medicago truncatula];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=5e-114) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G18910.1 (e_value=3e-129) | Symbols: | Protein kinase superfamily protein | chr5:6306994-6309396 REVERSE LENGTH=511;; (*ITAG) Solyc06g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33729298-33732840 transcript_region:SL2.40ch06:33729298..33732840+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033640g0001.1 protein AED:0.44 eAED:0.44 QI:95|1|1|1|1|1|2|6|56; (*ITAG) Solyc06g054480.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:33729298-33732840 transcript_region:SL2.40ch06:33729298..33732840+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00016211g0113.1 protein AED:0.15 eAED:0.16 QI:0|0.66|0.5|0.75|1|1|4|0|490 NbS00016211g0114.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0|0|3|0|834 NbS00025760g0008.1 protein AED:0.34 eAED:0.35 QI:6|0|0.33|1|0|0.33|3|467|550; (*GB) gi|225436849|ref|XP_002270788.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Vitis vinifera];; (*SWP) sp|O49343|PP177_ARATH (e_value=6e-147) Pentatricopeptide repeat-containing protein At2g30780 OS=Arabidopsis thaliana GN=At2g30780 PE=2 SV=1;; (*TAIR) AT2G30780.1 (e_value=4e-148) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:13116547-13118059 FORWARD LENGTH=452;; (*ITAG) Solyc07g053060.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58831095-58833870 transcript_region:SL2.40ch07:58831095..58833870- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HRN6_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00043460g0010.1 protein AED:0.10 eAED:0.10 QI:115|0.94|0.89|1|0.88|0.89|19|333|762; (*GB) gi|255538978|ref|XP_002510554.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9ZRZ8|RH28_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1;; (*TAIR) AT4G16630.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr4:9362176-9366449 REVERSE LENGTH=789;; (*ITAG) Solyc04g081580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63118443-63124879 transcript_region:SL2.40ch04:63118443..63124879+ go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LTF9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00043460g0011.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0.5|0.66|3|0|977; (*GB) gi|255538980|ref|XP_002510555.1| (e_value=5e-119) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24200.1 (e_value=1e-50) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr4:12556927-12559929 REVERSE LENGTH=1000;; (*ITAG) Solyc12g089320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62888275-62891286 transcript_region:SL2.40ch12:62888275..62891286- functional_description:"Bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *-*- Q6Z809_ORYSJ)"; NbS00006189g0002.1 protein AED:0.15 eAED:0.15 QI:148|0.9|0.90|1|0.9|0.81|11|2183|251; (*GB) gi|356541727|ref|XP_003539325.1| (e_value=8e-53) PREDICTED: F-box-like/WD repeat-containing protein ebi-like [Glycine max];; (*SWP) sp|Q4R8H1|TBL1X_MACFA (e_value=1e-20) F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1;; (*TAIR) AT5G67320.1 (e_value=3e-43) | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613;; (*ITAG) Solyc12g088630.1.1 (e_value=4e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62348964-62353663 transcript_region:SL2.40ch12:62348964..62353663+ go_terms:GO:0010843,GO:0003714 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MKQ9_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0010843,GO:0003714 NbS00035960g0005.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|177; (*GB) gi|270267863|gb|ACZ65511.1| (e_value=1e-107) Tap46 [Nicotiana benthamiana];; (*SWP) sp|Q8LDQ4|TAP46_ARATH (e_value=2e-72) PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2;; (*TAIR) AT5G53000.1 (e_value=1e-73) | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485654-21487869 REVERSE LENGTH=405;; (*ITAG) Solyc01g006110.2.1 (e_value=3e-98) genomic_reference:SL2.40ch01 gene_region:766543-772337 transcript_region:SL2.40ch01:766543..772337- go_terms:GO:0008601 functional_description:"PP2A regulatory subunit TAP46 (AHRD V1 **-- B6TVR5_MAIZE); contains Interpro domain(s) IPR007304 TAP42-like protein "; GO:0008601 NbS00035960g0008.1 protein AED:0.25 eAED:0.33 QI:0|0.23|0.21|0.78|0.61|0.64|14|0|492; (*GB) gi|169977312|emb|CAQ18903.1| (e_value=8e-158) chromomethylase [Nicotiana sylvestris];; (*SWP) sp|Q94F88|CMT3_ARATH (e_value=2e-72) DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana GN=CMT3 PE=1 SV=2;; (*TAIR) AT1G69770.1 (e_value=1e-73) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839;; (*ITAG) Solyc12g100330.1.1 (e_value=2e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65430879-65437290 transcript_region:SL2.40ch12:65430879..65437290+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** B9GLJ3_POPTR); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00009139g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|96; (*GB) gi|225460382|ref|XP_002266531.1| (e_value=4e-37) PREDICTED: uncharacterized protein LOC100261433 [Vitis vinifera];; (*TAIR) AT1G72170.1 (e_value=1e-31) | Symbols: | Domain of unknown function (DUF543) | chr1:27156403-27157516 FORWARD LENGTH=102;; (*ITAG) Solyc11g027870.1.1 (e_value=1e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:15646640-15654343 transcript_region:SL2.40ch11:15646640..15654343- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007512 Protein of unknown function DUF543 "; NbS00001621g0005.1 protein AED:0.10 eAED:0.17 QI:7|0|0|1|0.16|0.14|7|0|547; (*GB) gi|37781360|gb|AAP44394.1| (e_value=2e-174) nematode resistance-like protein [Solanum tuberosum];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=7e-32) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G45250.1 (e_value=1e-26) | Symbols: RPS4 | Disease resistance protein (TIR-NBS-LRR class) family | chr5:18321914-18326022 REVERSE LENGTH=1217;; (*ITAG) Solyc07g055380.1.1 (e_value=8e-179) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60757923-60760984 transcript_region:SL2.40ch07:60757923..60760984- go_terms:GO:0004872 functional_description:"Nbs-lrr, resistance protein"; GO:0004872 NbS00001621g0003.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|0.5|2|0|181; (*GB) gi|37781278|gb|AAP44391.1| (e_value=1e-47) nematode resistance-like protein [Solanum tuberosum];; (*SWP) sp|O23530|SNC1_ARATH (e_value=3e-13) Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3;; (*TAIR) AT5G17880.1 (e_value=7e-18) | Symbols: CSA1 | disease resistance protein (TIR-NBS-LRR class) | chr5:5908874-5913096 REVERSE LENGTH=1197;; (*ITAG) Solyc07g055380.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60757923-60760984 transcript_region:SL2.40ch07:60757923..60760984- go_terms:GO:0004872 functional_description:"Nbs-lrr, resistance protein"; GO:0004872 NbS00022959g0006.1 protein AED:0.32 eAED:0.32 QI:293|0.93|1|1|1|1|17|355|474; (*GB) gi|255538660|ref|XP_002510395.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9FRL3|ERDL6_ARATH (e_value=0.0) Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1;; (*TAIR) AT1G75220.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:28229412-28232606 REVERSE LENGTH=487;; (*ITAG) Solyc12g089180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62736297-62742836 transcript_region:SL2.40ch12:62736297..62742836- go_terms:GO:0016020,GO:0031177,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0031177,GO:0016021 NbS00022959g0008.1 protein AED:0.35 eAED:0.52 QI:0|0|0|1|0|0|3|0|167; (*GB) gi|290487696|gb|ADD30232.1| (e_value=9e-52) ribosomal protein L2 [Berberidopsis corallina];; (*SWP) sp|Q0ZIX7|RK2_VITVI (e_value=3e-53) 50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=1e-50) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=3e-52) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00022959g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|0|0|3|0|139; (*GB) gi|108773168|ref|YP_635678.1| (e_value=8e-37) ribosomal protein L22 [Solanum tuberosum];; (*SWP) sp|Q2VEE1|RK22_SOLTU (e_value=2e-38) 50S ribosomal protein L22, chloroplastic OS=Solanum tuberosum GN=rpl22 PE=3 SV=1;; (*ITAG) ATCG00810.1 (e_value=3e-31) | Symbols: RPL22 | ribosomal protein L22 | chrC:83467-83949 REVERSE LENGTH=160;; (*ITAG) Solyc01g007610.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:1879619-1881527 transcript_region:SL2.40ch01:1879619..1881527- go_terms:GO:0005840,GO:0015934,GO:0015935,GO:0003723 functional_description:"30S ribosomal protein S3 chloroplastic (AHRD V1 ***- D3WBD9_9BORA); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial "; GO:0005840,GO:0015934,GO:0015935,GO:0003723 NbS00052633g0004.1 protein AED:0.24 eAED:0.24 QI:481|0.71|0.5|1|0.57|0.5|8|0|333; (*GB) gi|297817814|ref|XP_002876790.1| (e_value=4e-89) hypothetical protein ARALYDRAFT_904415 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-57) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=2e-91) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc06g048940.2.1 (e_value=9e-120) genomic_reference:SL2.40ch06 gene_region:28496228-28500434 transcript_region:SL2.40ch06:28496228..28500434+ go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00026948g0014.1 protein AED:0.03 eAED:0.06 QI:124|0.7|0.54|1|0.8|0.72|11|206|1030; (*GB) gi|225458631|ref|XP_002284804.1| (e_value=0.0) PREDICTED: THO complex subunit 5 homolog [Vitis vinifera];; (*SWP) sp|Q6NY52|THOC5_DANRE (e_value=2e-22) THO complex subunit 5 homolog OS=Danio rerio GN=thoc5 PE=2 SV=1;; (*TAIR) AT5G42920.2 (e_value=0.0) | Symbols: THO5, AtTHO5 | THO complex, subunit 5 | chr5:17206310-17209522 REVERSE LENGTH=819;; (*ITAG) Solyc04g078830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61086208-61093163 transcript_region:SL2.40ch04:61086208..61093163+ functional_description:"THO complex subunit 5 homolog (AHRD V1 *-*- THOC5_DANRE); contains Interpro domain(s) IPR019163 THO complex, subunit 5 "; NbS00026948g0015.1 protein AED:0.03 eAED:0.09 QI:0|0.66|0.25|1|0.33|0.5|4|0|310; (*GB) gi|350539299|ref|NP_001233874.1| (e_value=1e-93) protein DCL, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q42463|DCL_SOLLC (e_value=4e-95) Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1;; (*TAIR) AT1G45230.1 (e_value=2e-72) | Symbols: | Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219;; (*ITAG) Solyc04g078850.2.1 (e_value=2e-96) genomic_reference:SL2.40ch04 gene_region:61103300-61107755 transcript_region:SL2.40ch04:61103300..61107755- functional_description:"DNA-directed RNA polymerase (Fragment) (AHRD V1 *-*- Q5D868_SPIOL)"; NbS00026948g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.25|1|1|4|0|435; (*GB) gi|350538377|ref|NP_001234596.1| (e_value=0.0) AREB-like protein [Solanum lycopersicum];; (*SWP) sp|Q9M7Q4|AI5L5_ARATH (e_value=3e-89) ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1;; (*TAIR) AT1G45249.1 (e_value=3e-90) | Symbols: ABF2, AREB1, ATAREB1 | abscisic acid responsive elements-binding factor 2 | chr1:17165420-17167415 REVERSE LENGTH=416;; (*ITAG) Solyc04g078840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61094101-61097408 transcript_region:SL2.40ch04:61094101..61097408- go_terms:GO:0003700,GO:0010843 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700,GO:0010843 NbS00027331g0006.1 protein AED:0.06 eAED:0.06 QI:80|1|1|1|0.42|0.5|8|262|530; (*GB) gi|224109926|ref|XP_002315357.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc05g055410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64209316-64213691 transcript_region:SL2.40ch05:64209316..64213691- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C6 glycosyltransferase family 2 (AHRD V1 **-* A6N4C3_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00027331g0005.1 protein AED:0.10 eAED:0.10 QI:323|0.71|0.62|0.87|0.71|0.62|8|0|712; (*GB) gi|255584380|ref|XP_002532924.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9Y169|EXT2_DROME (e_value=6e-33) Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1;; (*TAIR) AT5G04500.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc05g055420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64216268-64222017 transcript_region:SL2.40ch05:64216268..64222017- go_terms:GO:0016757 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0016757 NbS00008113g0005.1 protein AED:0.22 eAED:0.24 QI:125|0.5|0.6|0.8|0.75|0.6|5|0|299; (*GB) gi|225434618|ref|XP_002279321.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera];; (*SWP) sp|Q9SD61|C3H42_ARATH (e_value=4e-61) Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1;; (*TAIR) AT3G47120.1 (e_value=3e-62) | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:17351334-17352769 REVERSE LENGTH=352;; (*ITAG) Solyc03g119430.2.1 (e_value=5e-138) genomic_reference:SL2.40ch03 gene_region:62095946-62099039 transcript_region:SL2.40ch03:62095946..62099039- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q9Y6G0_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00007841g0011.1 protein AED:0.05 eAED:0.05 QI:154|1|1|1|0.83|0.84|13|313|541; (*GB) gi|356498779|ref|XP_003518226.1| (e_value=0.0) PREDICTED: T-complex protein 1 subunit theta-like [Glycine max];; (*SWP) sp|Q552J0|TCPQ_DICDI (e_value=0.0) T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1;; (*TAIR) AT3G03960.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:1024432-1027604 FORWARD LENGTH=549;; (*ITAG) Solyc01g088080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74678732-74687543 transcript_region:SL2.40ch01:74678732..74687543+ go_terms:GO:0042623,GO:0051082 functional_description:"T-complex protein theta subunit (AHRD V1 ***- A8IF08_CHLRE); contains Interpro domain(s) IPR012721 T-complex protein 1, theta subunit "; GO:0042623,GO:0051082 NbS00007841g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|3|0|446; (*GB) gi|147844250|emb|CAN82122.1| (e_value=5e-113) hypothetical protein VITISV_009093 [Vitis vinifera];; (*SWP) sp|Q7XA42|RGA1_SOLBU (e_value=2e-57) Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=7e-49) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g088060.2.1 (e_value=2e-152) genomic_reference:SL2.40ch01 gene_region:74665132-74670971 transcript_region:SL2.40ch01:74665132..74670971- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00007841g0014.1 protein AED:0.26 eAED:0.26 QI:15|0.8|0.5|1|0.8|0.66|6|0|542; (*GB) gi|156763846|emb|CAO99125.1| (e_value=0.0) putative esterase [Nicotiana tabacum];; (*TAIR) AT5G13800.1 (e_value=0.0) | Symbols: PPH, CRN1 | pheophytinase | chr5:4452063-4454141 REVERSE LENGTH=484;; (*ITAG) Solyc01g088090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74688575-74691916 transcript_region:SL2.40ch01:74688575..74691916- go_terms:GO:0080124 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M5W5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080124 NbS00007841g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|147844250|emb|CAN82122.1| (e_value=2e-36) hypothetical protein VITISV_009093 [Vitis vinifera];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=3e-14) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=2e-15) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g088060.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:74665132-74670971 transcript_region:SL2.40ch01:74665132..74670971- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00021490g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|368; (*GB) gi|359497575|ref|XP_003635570.1| (e_value=2e-118) PREDICTED: probable F-box protein At4g22030-like [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=6e-79) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G04480.1 (e_value=2e-86) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398;; (*ITAG) Solyc02g080850.1.1 (e_value=5e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39542836-39544104 transcript_region:SL2.40ch02:39542836..39544104+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00021490g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.4|0.5|0.83|0|0.16|6|231|152; (*GB) gi|255554829|ref|XP_002518452.1| (e_value=2e-45) peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=5e-35) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G04470.1 (e_value=4e-36) | Symbols: PMP22 | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:2227963-2229226 REVERSE LENGTH=190;; (*ITAG) Solyc03g031600.2.1 (e_value=8e-59) genomic_reference:SL2.40ch03 gene_region:8366728-8371789 transcript_region:SL2.40ch03:8366728..8371789- go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein PMP22 (AHRD V1 ***- B6TFH7_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00015350g0007.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|1|1|3|0|364; (*GB) gi|350535823|ref|NP_001233959.1| (e_value=0.0) SNF4 protein [Solanum lycopersicum];; (*SWP) sp|Q9XI37|PV42A_ARATH (e_value=1e-126) SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1;; (*TAIR) AT1G15330.1 (e_value=8e-128) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:5274368-5275499 FORWARD LENGTH=352;; (*ITAG) Solyc06g068160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38629781-38631465 transcript_region:SL2.40ch06:38629781..38631465- functional_description:"5&apos-AMP-activated protein kinase subunit gamma-3 (AHRD V1 **-- B1PM77_SHEEP); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00015350g0008.1 protein AED:0.21 eAED:0.21 QI:113|0.4|0.5|1|0|0.33|6|102|196; (*GB) gi|297743473|emb|CBI36340.3| (e_value=1e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G32270.1 (e_value=4e-16) | Symbols: | Ubiquitin-like superfamily protein | chr4:15575015-15576360 REVERSE LENGTH=239;; (*ITAG) Solyc06g068170.1.1 (e_value=1e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:38632567-38635545 transcript_region:SL2.40ch06:38632567..38635545- functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- C1C3V0_RANCA)"; NbS00036640g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|77 NbS00044296g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|424|449; (*GB) gi|260177086|gb|ACX33886.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8VZ59|YUC6_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1;; (*TAIR) AT5G25620.1 (e_value=0.0) | Symbols: YUC6 | Flavin-binding monooxygenase family protein | chr5:8935520-8938224 REVERSE LENGTH=417;; (*ITAG) Solyc08g068160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54471769-54474827 transcript_region:SL2.40ch08:54471769..54474827- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00006382g0012.1 protein AED:0.20 eAED:0.20 QI:364|1|1|1|1|1|3|214|262; (*GB) gi|164507175|gb|ABY59789.1| (e_value=0.0) methyl jasmonate esterase [Nicotiana attenuata];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=2e-78) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23610.1 (e_value=1e-81) | Symbols: ATMES3, MES3 | methyl esterase 3 | chr2:10044410-10046403 REVERSE LENGTH=263;; (*ITAG) Solyc03g044790.2.1 (e_value=5e-164) genomic_reference:SL2.40ch03 gene_region:14505298-14507543 transcript_region:SL2.40ch03:14505298..14507543- go_terms:GO:0080031,GO:0080030 functional_description:"Alpha-hydroxynitrile lyase (AHRD V1 **-- O49897_MANES); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00006382g0013.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|498; (*GB) gi|17065916|emb|CAC80883.1| (e_value=0.0) geraniol 10-hydroxylase [Catharanthus roseus];; (*SWP) sp|O23976|C76B1_HELTU (e_value=1e-159) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45570.1 (e_value=3e-149) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc02g090300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46462377-46464211 transcript_region:SL2.40ch02:46462377..46464211+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006382g0006.1 protein AED:0.53 eAED:0.72 QI:213|0.25|0.4|0.6|0.75|0.6|5|0|161 NbS00043295g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|0.87|1|1|1|8|124|444; (*GB) gi|39748726|emb|CAE84598.1| (e_value=0.0) putative legumain [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=6e-171) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=4e-166) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51198895-51202956 transcript_region:SL2.40ch08:51198895..51202956+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00043295g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|0.62|0.66|9|0|419; (*GB) gi|40809674|emb|CAB42650.2| (e_value=0.0) putative preprolegumain [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=6e-160) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=2e-160) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:51300723-51303058 transcript_region:SL2.40ch08:51300723..51303058- go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme (AHRD V1 **-- Q9SMD0_SOLLC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00043295g0002.1 protein AED:0.27 eAED:0.31 QI:72|0.66|0.6|1|1|1|10|0|512; (*GB) gi|27544008|dbj|BAC54828.1| (e_value=0.0) vacuolar processing enzyme-1b [Nicotiana tabacum];; (*SWP) sp|P49043|VPE_CITSI (e_value=0.0) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=0.0) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50956613-50962513 transcript_region:SL2.40ch08:50956613..50962513- go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00001164g0003.1 protein AED:0.14 eAED:0.14 QI:202|1|1|1|0.8|0.72|11|445|556; (*GB) gi|147862940|emb|CAN83206.1| (e_value=0.0) hypothetical protein VITISV_019937 [Vitis vinifera];; (*SWP) sp|Q3TIX9|SNUT2_MOUSE (e_value=2e-156) U4/U6.U5 tri-snRNP-associated protein 2 OS=Mus musculus GN=Usp39 PE=2 SV=2;; (*TAIR) AT4G22285.1 (e_value=0.0) | Symbols: | Ubiquitin C-terminal hydrolases superfamily protein | chr4:11779063-11781898 REVERSE LENGTH=541;; (*ITAG) Solyc02g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32994749-33000085 transcript_region:SL2.40ch02:32994749..33000085- go_terms:GO:0005515,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7ME50_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0005515,GO:0004197 NbS00004364g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|147809620|emb|CAN66643.1| (e_value=1e-17) hypothetical protein VITISV_034771 [Vitis vinifera];; (*ITAG) Solyc05g009340.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3485275-3485631 transcript_region:SL2.40ch05:3485275..3485631- functional_description:"Unknown Protein (AHRD V1)"; NbS00042663g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|0.8|1|1|1|5|430|452; (*GB) gi|81074755|gb|ABB55373.1| (e_value=0.0) polygalacturonase-like protein-like [Solanum tuberosum];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=6e-141) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G16850.1 (e_value=2e-180) | Symbols: | Pectin lyase-like superfamily protein | chr3:5748692-5750981 FORWARD LENGTH=455;; (*ITAG) Solyc09g075460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62664675-62668645 transcript_region:SL2.40ch09:62664675..62668645+ go_terms:GO:0005975 functional_description:"Polygalacturonase-like protein-like (AHRD V1 ***- Q2XTD7_SOLTU); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00042663g0011.1 protein AED:0.18 eAED:0.23 QI:38|0|0|1|0|0|4|0|288; (*GB) gi|255578719|ref|XP_002530218.1| (e_value=3e-57) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LKR4|FRS10_ARATH (e_value=3e-28) Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2;; (*TAIR) AT5G28530.1 (e_value=2e-29) | Symbols: FRS10 | FAR1-related sequence 10 | chr5:10525078-10527300 REVERSE LENGTH=685;; (*ITAG) Solyc07g045520.2.1 (e_value=6e-30) genomic_reference:SL2.40ch07 gene_region:55960774-55963655 transcript_region:SL2.40ch07:55960774..55963655+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00019239g0001.1 protein AED:0.15 eAED:0.21 QI:0|0.33|0.25|1|0|0|4|0|199; (*GB) gi|147839228|emb|CAN65690.1| (e_value=1e-49) hypothetical protein VITISV_022466 [Vitis vinifera];; (*SWP) sp|O80494|P2B15_ARATH (e_value=5e-34) F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2;; (*TAIR) AT1G09155.1 (e_value=4e-35) | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B15 | chr1:2949831-2950842 REVERSE LENGTH=289;; (*ITAG) Solyc01g099990.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:81840818-81842579 transcript_region:SL2.40ch01:81840818..81842579- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00018426g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|132; (*ITAG) Solyc06g071760.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:40588092-40588433 transcript_region:SL2.40ch06:40588092..40588433+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018426g0019.1 protein AED:0.09 eAED:0.09 QI:260|0.87|0.77|1|0.87|0.77|9|27|903; (*GB) gi|337732515|gb|AEI71779.1| (e_value=0.0) JOKA2 [Nicotiana tabacum];; (*SWP) sp|Q5RC94|NBR1_PONAB (e_value=1e-19) Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1;; (*TAIR) AT4G24690.1 (e_value=1e-118) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704;; (*ITAG) Solyc03g112230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56747879-56752208 transcript_region:SL2.40ch03:56747879..56752208- go_terms:GO:0008270 functional_description:"ZZ type zinc finger domain-containing protein (Fragment) (AHRD V1 *--- C1GFD2_PARBD); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0008270 NbS00018426g0020.1 protein AED:0.17 eAED:0.17 QI:11|0.85|0.62|1|0.57|0.62|8|274|484; (*GB) gi|225456896|ref|XP_002277527.1| (e_value=0.0) PREDICTED: MATE efflux family protein 7 [Vitis vinifera];; (*SWP) sp|Q9SIA1|MATE8_ARATH (e_value=7e-121) MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=2 SV=2;; (*TAIR) AT5G52450.1 (e_value=7e-174) | Symbols: | MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486;; (*ITAG) Solyc03g112250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56768280-56770473 transcript_region:SL2.40ch03:56768280..56770473- go_terms:GO:0015559 functional_description:"Multidrug and toxin extrusion protein 1 (AHRD V1 **-- S47A1_MOUSE); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00018426g0005.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|107; (*ITAG) Solyc03g112200.1.1 (e_value=9e-12) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:56739563-56740318 transcript_region:SL2.40ch03:56739563..56740318- functional_description:"Unknown Protein (AHRD V1)"; NbS00018426g0004.1 protein AED:0.38 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|107; (*GB) gi|359491203|ref|XP_003634240.1| (e_value=5e-15) PREDICTED: uncharacterized protein LOC100855230 [Vitis vinifera];; (*ITAG) Solyc03g112210.1.1 (e_value=1e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:56741857-56742135 transcript_region:SL2.40ch03:56741857..56742135- functional_description:"Unknown Protein (AHRD V1)"; NbS00018426g0024.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0.5|0.66|3|0|829; (*GB) gi|225456884|ref|XP_002277390.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9STK5|PP269_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1;; (*TAIR) AT3G48250.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17870064-17871929 REVERSE LENGTH=621;; (*ITAG) Solyc03g112190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00045721g0004.1 protein AED:0.03 eAED:0.03 QI:167|1|1|1|1|1|8|459|785; (*GB) gi|224065579|ref|XP_002301867.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN50|PMTS_ARATH (e_value=0.0) Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1;; (*TAIR) AT1G19430.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:6724669-6727533 REVERSE LENGTH=724;; (*ITAG) Solyc04g080360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62159805-62164799 transcript_region:SL2.40ch04:62159805..62164799- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00024025g0006.1 protein AED:0.16 eAED:0.16 QI:307|1|1|1|0.75|0.6|5|180|362; (*GB) gi|255541750|ref|XP_002511939.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G01220.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr4:513431-515648 REVERSE LENGTH=360;; (*ITAG) Solyc01g095290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78363145-78367864 transcript_region:SL2.40ch01:78363145..78367864+ go_terms:GO:0035252 functional_description:"1 3-alpha-D-xylosyltransferase (AHRD V1 **-* Q9ZSJ2_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0035252 NbS00024025g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0.88|1|0.5|0.55|9|279|279; (*GB) gi|255541748|ref|XP_002511938.1| (e_value=4e-132) Protein ABIL1, putative [Ricinus communis];; (*SWP) sp|Q8S8M5|ABIL1_ARATH (e_value=7e-105) Protein ABIL1 OS=Arabidopsis thaliana GN=ABIL1 PE=1 SV=1;; (*TAIR) AT2G46225.1 (e_value=5e-106) | Symbols: ABIL1 | ABI-1-like 1 | chr2:18982113-18984074 FORWARD LENGTH=298;; (*ITAG) Solyc01g095280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78357902-78362529 transcript_region:SL2.40ch01:78357902..78362529+ go_terms:GO:0005515 functional_description:"Protein ABIL1 (AHRD V1 **-- B6TCZ2_MAIZE)"; GO:0005515 NbS00017720g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|0.37|0.22|9|279|401; (*GB) gi|296086080|emb|CBI31521.3| (e_value=2e-144) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54970.1 (e_value=3e-103) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr3:20368329-20370070 REVERSE LENGTH=353;; (*ITAG) Solyc04g049890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:43847175-43852499 transcript_region:SL2.40ch04:43847175..43852499+ go_terms:GO:0008152 functional_description:"Os02g0252600 protein (Fragment) (AHRD V1 *-*- Q0E2C2_ORYSJ); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00050466g0010.1 protein AED:0.28 eAED:0.28 QI:79|0.88|0.83|1|0.88|0.94|18|320|640; (*GB) gi|359476856|ref|XP_002267687.2| (e_value=0.0) PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera];; (*SWP) sp|Q8TE76|MORC4_HUMAN (e_value=6e-55) MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2;; (*TAIR) AT4G36280.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:17165513-17169277 REVERSE LENGTH=626;; (*ITAG) Solyc02g084700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42376256-42390153 transcript_region:SL2.40ch02:42376256..42390153- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00050466g0013.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0|0.75|0.33|0.5|4|0|197; (*GB) gi|57014021|ref|YP_173492.1| (e_value=3e-15) hypothetical protein NitaMp155 [Nicotiana tabacum];; (*ITAG) Solyc00g014860.1.1 (e_value=2e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11074683-11074992 transcript_region:SL2.40ch00:11074683..11074992- functional_description:"Unknown Protein (AHRD V1)"; NbS00050466g0015.1 protein AED:0.24 eAED:0.60 QI:0|0|0|0.66|0|0|3|0|149; (*ITAG) Solyc00g014840.1.1 (e_value=7e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11072542-11072883 transcript_region:SL2.40ch00:11072542..11072883+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050466g0014.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|57014020|ref|YP_173491.1| (e_value=5e-36) hypothetical protein NitaMp154 [Nicotiana tabacum];; (*ITAG) Solyc00g014850.1.1 (e_value=9e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:11073759-11074070 transcript_region:SL2.40ch00:11073759..11074070- functional_description:"ORF86 (AHRD V1 ***- B6VJY4_VITVI)"; NbS00007653g0002.1 protein AED:0.80 eAED:0.80 QI:73|0|0.5|0.5|0|0.5|2|0|33 NbS00041795g0001.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|1|1|3|0|99 NbS00023202g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|8|0|445; (*GB) gi|5734587|emb|CAB52797.1| (e_value=0.0) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=8e-55) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT4G28220.1 (e_value=0.0) | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13993078-13995651 FORWARD LENGTH=571;; (*ITAG) Solyc10g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2704288-2710170 transcript_region:SL2.40ch10:2704288..2710170+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00046633g0002.1 protein AED:0.19 eAED:0.19 QI:196|0.42|0.5|0.75|1|1|8|0|363; (*GB) gi|255582681|ref|XP_002532119.1| (e_value=2e-131) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P73555|Y875_SYNY3 (e_value=2e-39) Uncharacterized membrane protein sll0875 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0875 PE=3 SV=1;; (*TAIR) AT1G78620.1 (e_value=8e-125) | Symbols: | Protein of unknown function DUF92, transmembrane | chr1:29573862-29575758 REVERSE LENGTH=333;; (*ITAG) Solyc07g062180.2.1 (e_value=7e-175) genomic_reference:SL2.40ch07 gene_region:62209162-62213598 transcript_region:SL2.40ch07:62209162..62213598- functional_description:"Predicted membrane protein (AHRD V1 ***- A2C1C4_PROM1); contains Interpro domain(s) IPR002794 Protein of unknown function DUF92, transmembrane "; NbS00006978g0002.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|0|0.5|2|0|192; (*GB) gi|359476911|ref|XP_003631909.1| (e_value=1e-78) PREDICTED: LOW QUALITY PROTEIN: medium-chain-fatty-acid--CoA ligase-like [Vitis vinifera];; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=4e-70) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=3e-71) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc02g082870.2.1 (e_value=4e-92) genomic_reference:SL2.40ch02 gene_region:41097342-41100068 transcript_region:SL2.40ch02:41097342..41100068+ go_terms:GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208 NbS00013023g0015.1 protein AED:0.20 eAED:0.20 QI:82|0.8|1|1|1|1|6|146|352; (*GB) gi|38503237|sp|Q9SC80.1|DHYS_TOBAC (e_value=0.0) RecName: Full=Deoxyhypusine synthase;; (*SWP) sp|Q9SC80|DHYS_TOBAC (e_value=0.0) Deoxyhypusine synthase OS=Nicotiana tabacum GN=DHS1 PE=2 SV=1;; (*TAIR) AT5G05920.1 (e_value=0.0) | Symbols: DHS, EDA22 | deoxyhypusine synthase | chr5:1777781-1779699 REVERSE LENGTH=368;; (*ITAG) Solyc02g080800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39508646-39513817 transcript_region:SL2.40ch02:39508646..39513817- go_terms:GO:0005515 functional_description:"Deoxyhypusine synthase (AHRD V1 ***- Q5ZN61_9ASTE); contains Interpro domain(s) IPR002773 Deoxyhypusine synthase "; GO:0005515 NbS00013023g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|1|1|3|0|406; (*GB) gi|1707878|sp|P54260.1|GCST_SOLTU (e_value=0.0) RecName: Full=Aminomethyltransferase, mitochondrial; AltName: Full=Glycine cleavage system T protein; Short=GCVT; Flags: Precursor;; (*SWP) sp|P54260|GCST_SOLTU (e_value=0.0) Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1;; (*TAIR) AT1G11860.3 (e_value=0.0) | Symbols: | Glycine cleavage T-protein family | chr1:4001801-4003245 FORWARD LENGTH=408;; (*ITAG) Solyc02g080810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39515754-39519204 transcript_region:SL2.40ch02:39515754..39519204- go_terms:GO:0004375,GO:0005515,GO:0031405 functional_description:"Aminomethyltransferase (AHRD V1 ***- C6TF02_SOYBN); contains Interpro domain(s) IPR006223 Glycine cleavage system T protein "; GO:0004375,GO:0005515,GO:0031405 NbS00013023g0016.1 protein AED:0.27 eAED:0.27 QI:1083|0.8|1|1|0.8|0.83|6|608|120; (*GB) gi|302144121|emb|CBI23226.3| (e_value=2e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G62250.1 (e_value=1e-70) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22995615-22997003 REVERSE LENGTH=267;; (*ITAG) Solyc02g080780.2.1 (e_value=2e-79) genomic_reference:SL2.40ch02 gene_region:39487698-39491256 transcript_region:SL2.40ch02:39487698..39491256- functional_description:"Unknown Protein (AHRD V1)"; NbS00013023g0023.1 protein AED:0.31 eAED:0.31 QI:225|1|1|1|0.5|0.57|7|498|185; (*GB) gi|255554829|ref|XP_002518452.1| (e_value=3e-86) peroxisomal membrane protein 2, pxmp2, putative [Ricinus communis];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=2e-67) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G14305.1 (e_value=2e-72) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:8235335-8236605 REVERSE LENGTH=185;; (*ITAG) Solyc02g080820.2.1 (e_value=4e-105) genomic_reference:SL2.40ch02 gene_region:39520175-39524606 transcript_region:SL2.40ch02:39520175..39524606+ go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein PMP22 (AHRD V1 ***- B6UFM9_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00013023g0022.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|3|0|380; (*GB) gi|359483416|ref|XP_002266376.2| (e_value=1e-116) PREDICTED: probable F-box protein At4g22030 [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=8e-80) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G04480.1 (e_value=2e-84) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398;; (*ITAG) Solyc02g080830.1.1 (e_value=1e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39529511-39530758 transcript_region:SL2.40ch02:39529511..39530758+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00013023g0024.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0|2|0|284 NbS00030614g0009.1 protein AED:0.04 eAED:0.04 QI:196|1|0.8|1|1|0.8|5|235|908; (*GB) gi|356521349|ref|XP_003529319.1| (e_value=0.0) PREDICTED: mutS2 protein-like isoform 1 [Glycine max];; (*SWP) sp|P73625|MUTS2_SYNY3 (e_value=2e-117) MutS2 protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mutSB PE=3 SV=1;; (*TAIR) AT1G65070.2 (e_value=0.0) | Symbols: | DNA mismatch repair protein MutS, type 2 | chr1:24173047-24176244 REVERSE LENGTH=876;; (*ITAG) Solyc02g078390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37664523-37669636 transcript_region:SL2.40ch02:37664523..37669636- go_terms:GO:0045005,GO:0006298 functional_description:"MutS2 protein (AHRD V1 ***- B0JH18_MICAN); contains Interpro domain(s) IPR005747 DNA mismatch repair protein MutS, type 2 "; GO:0045005,GO:0006298 NbS00030614g0010.1 protein AED:0.05 eAED:0.05 QI:337|0.66|0.75|1|0.33|0.25|4|2426|226; (*GB) gi|76160988|gb|ABA40457.1| (e_value=2e-130) TSJT1-like protein [Solanum tuberosum];; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=2e-106) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT4G27450.1 (e_value=4e-49) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr4:13727665-13728683 REVERSE LENGTH=250;; (*ITAG) Solyc02g078380.2.1 (e_value=4e-134) genomic_reference:SL2.40ch02 gene_region:37662239-37663693 transcript_region:SL2.40ch02:37662239..37663693- functional_description:"Aluminum-induced protein-like protein (AHRD V1 **-- Q8S2R9_THEHA)"; NbS00030614g0005.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|135258|sp|P24804|TA29_TOBAC (e_value=7e-81) Anther-specific protein TA-29;; (*SWP) sp|P24804|TA29_TOBAC (e_value=2e-82) Anther-specific protein TA-29 OS=Nicotiana tabacum GN=TA-29 PE=2 SV=1;; (*ITAG) Solyc02g078370.1.1 (e_value=9e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37660706-37661650 transcript_region:SL2.40ch02:37660706..37661650+ functional_description:"Anther-specific protein TA-29 (AHRD V1 ***- TA29_TOBAC)"; NbS00030614g0004.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|135258|sp|P24804|TA29_TOBAC (e_value=3e-82) Anther-specific protein TA-29;; (*SWP) sp|P24804|TA29_TOBAC (e_value=8e-84) Anther-specific protein TA-29 OS=Nicotiana tabacum GN=TA-29 PE=2 SV=1;; (*ITAG) Solyc02g078370.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37660706-37661650 transcript_region:SL2.40ch02:37660706..37661650+ functional_description:"Anther-specific protein TA-29 (AHRD V1 ***- TA29_TOBAC)"; NbS00032183g0007.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|1|2|0|338; (*GB) gi|224099843|ref|XP_002311642.1| (e_value=3e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=1e-117) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1;; (*TAIR) AT3G22830.1 (e_value=1e-118) | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription factor A6B | chr3:8078981-8080895 FORWARD LENGTH=406;; (*ITAG) Solyc09g082670.2.1 (e_value=5e-122) genomic_reference:SL2.40ch09 gene_region:63781968-63784228 transcript_region:SL2.40ch09:63781968..63784228+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00032183g0008.1 protein AED:0.13 eAED:0.13 QI:20|0.66|0.5|1|0.66|0.75|4|0|169; (*GB) gi|14625425|dbj|BAB61919.1| (e_value=2e-97) calmodulin NtCaM13 [Nicotiana tabacum];; (*SWP) sp|O23320|CML8_ARATH (e_value=1e-81) Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=2 SV=1;; (*TAIR) AT4G14640.1 (e_value=7e-83) | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397800-8399996 FORWARD LENGTH=151;; (*ITAG) Solyc06g053930.2.1 (e_value=4e-98) genomic_reference:SL2.40ch06 gene_region:33328449-33330360 transcript_region:SL2.40ch06:33328449..33330360+ go_terms:GO:0005516 functional_description:"Calmodulin (AHRD V1 **** Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005516 NbS00032183g0010.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|0|0|3|0|110; (*GB) gi|351653928|ref|YP_004891651.1| (e_value=1e-44) ycf2 gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P09976|YCF2_TOBAC (e_value=3e-46) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=1e-42) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-46) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00006582g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|225434889|ref|XP_002280733.1| (e_value=3e-151) PREDICTED: uncharacterized protein LOC100255385 [Vitis vinifera];; (*TAIR) AT5G59500.1 (e_value=5e-136) | Symbols: | protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases | chr5:23986024-23987214 FORWARD LENGTH=396;; (*ITAG) Solyc07g007700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2356283-2357485 transcript_region:SL2.40ch07:2356283..2357485+ functional_description:"Isoprenylcysteine carboxyl methyltransferase (AHRD V1 *-*- B3QS90_CHLT3)"; NbS00006582g0003.1 protein AED:0.29 eAED:0.29 QI:38|0.83|1|1|1|1|7|336|242; (*GB) gi|109390024|gb|ABG29731.1| (e_value=8e-169) RNA export 1 [Nicotiana benthamiana];; (*SWP) sp|Q38942|RAE1L_ARATH (e_value=2e-143) Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2;; (*TAIR) AT1G80670.1 (e_value=1e-144) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:30320809-30323543 REVERSE LENGTH=349;; (*ITAG) Solyc10g047000.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:34606639-34615943 transcript_region:SL2.40ch10:34606639..34615943- go_terms:GO:0008017 functional_description:"mRNA export factor (AHRD V1 **-- B5X9N9_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008017 NbS00006582g0002.1 protein AED:0.91 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|103 NbS00012218g0012.1 protein AED:0.17 eAED:0.17 QI:254|1|1|1|1|0.85|7|0|319; (*GB) gi|304650830|gb|ADM47437.1| (e_value=0.0) ornithine aminotransferase [Nicotiana tabacum];; (*SWP) sp|Q54JP5|OAT_DICDI (e_value=2e-125) Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1;; (*TAIR) AT5G46180.1 (e_value=9e-179) | Symbols: DELTA-OAT | ornithine-delta-aminotransferase | chr5:18718766-18721271 REVERSE LENGTH=475;; (*ITAG) Solyc08g048450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:40074084-40085852 transcript_region:SL2.40ch08:40074084..40085852- go_terms:GO:0004587 functional_description:"Ornithine-oxo-acid transaminase (AHRD V1 **** A8CF49_BRACM); contains Interpro domain(s) IPR010164 Ornithine aminotransferase "; GO:0004587 NbS00012218g0011.1 protein AED:0.65 eAED:0.65 QI:0|0.5|0|0.66|1|1|3|0|157; (*GB) gi|304650830|gb|ADM47437.1| (e_value=4e-102) ornithine aminotransferase [Nicotiana tabacum];; (*SWP) sp|P07991|OAT_YEAST (e_value=7e-34) Ornithine aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAR2 PE=1 SV=2;; (*TAIR) AT5G46180.1 (e_value=2e-69) | Symbols: DELTA-OAT | ornithine-delta-aminotransferase | chr5:18718766-18721271 REVERSE LENGTH=475;; (*ITAG) Solyc08g048450.2.1 (e_value=2e-100) genomic_reference:SL2.40ch08 gene_region:40074084-40085852 transcript_region:SL2.40ch08:40074084..40085852- go_terms:GO:0004587 functional_description:"Ornithine-oxo-acid transaminase (AHRD V1 **** A8CF49_BRACM); contains Interpro domain(s) IPR010164 Ornithine aminotransferase "; GO:0004587 NbS00059961g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|317|154; (*GB) gi|224106463|ref|XP_002314174.1| (e_value=4e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVC9|RLA32_ARATH (e_value=3e-30) 60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1;; (*TAIR) AT5G57290.1 (e_value=2e-31) | Symbols: | 60S acidic ribosomal protein family | chr5:23207049-23207835 REVERSE LENGTH=120;; (*ITAG) Solyc07g009330.2.1 (e_value=1e-41) genomic_reference:SL2.40ch07 gene_region:4378704-4380091 transcript_region:SL2.40ch07:4378704..4380091- go_terms:GO:0005840 functional_description:"60S acidic ribosomal protein P3 (AHRD V1 ***- B4G1B3_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00015312g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|4|225|237; (*GB) gi|341865452|dbj|BAK53859.1| (e_value=2e-131) quinone reductase [Nicotiana benthamiana];; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=6e-55) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G27270.1 (e_value=6e-122) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=4e-123) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00015312g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.87|1|0.71|0.5|8|352|455; (*GB) gi|359496230|ref|XP_003635184.1| (e_value=6e-122) PREDICTED: transcription factor bHLH123-like [Vitis vinifera];; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=3e-54) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT3G20640.1 (e_value=2e-55) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454;; (*ITAG) Solyc02g079760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38783027-38785687 transcript_region:SL2.40ch02:38783027..38785687- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00015582g0008.1 protein AED:0.11 eAED:0.11 QI:162|0.8|0.83|1|0.6|0.83|6|433|350; (*GB) gi|187761607|dbj|BAG31942.1| (e_value=0.0) MAP kinase [Nicotiana benthamiana];; (*SWP) sp|Q40531|NTF6_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF6 OS=Nicotiana tabacum GN=NTF6 PE=2 SV=1;; (*TAIR) AT1G07880.2 (e_value=0.0) | Symbols: ATMPK13 | Protein kinase superfamily protein | chr1:2434193-2435712 REVERSE LENGTH=363;; (*ITAG) Solyc11g072630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52945837-52949594 transcript_region:SL2.40ch11:52945837..52949594+ go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase (AHRD V1 ***- Q8LT15_SOLTU); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0006468 NbS00022503g0012.1 protein AED:0.20 eAED:0.21 QI:0|0.33|0.25|1|1|1|4|0|370; (*GB) gi|225453600|ref|XP_002264721.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 1-like [Vitis vinifera];; (*SWP) sp|Q9MAM3|KCS1_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1;; (*TAIR) AT1G01120.1 (e_value=0.0) | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57392-58978 REVERSE LENGTH=528;; (*ITAG) Solyc10g009240.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3233896-3236001 transcript_region:SL2.40ch10:3233896..3236001- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00022503g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|159895659|gb|ABX10440.1| (e_value=3e-61) 3-ketoacyl-CoA synthase 10 [Gossypium hirsutum];; (*SWP) sp|Q9MAM3|KCS1_ARATH (e_value=5e-49) 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1;; (*TAIR) AT1G01120.1 (e_value=4e-50) | Symbols: KCS1 | 3-ketoacyl-CoA synthase 1 | chr1:57392-58978 REVERSE LENGTH=528;; (*ITAG) Solyc10g009240.2.1 (e_value=8e-69) genomic_reference:SL2.40ch10 gene_region:3233896-3236001 transcript_region:SL2.40ch10:3233896..3236001- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00027817g0005.1 protein AED:0.13 eAED:0.20 QI:0|0|0|1|0.5|0.66|3|0|517; (*GB) gi|225433680|ref|XP_002265738.1| (e_value=7e-152) PREDICTED: uncharacterized protein LOC100266927 [Vitis vinifera];; (*TAIR) AT5G62990.1 (e_value=6e-139) | Symbols: emb1692 | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:25277828-25279312 FORWARD LENGTH=494;; (*ITAG) Solyc10g045490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:29623054-29624472 transcript_region:SL2.40ch10:29623054..29624472+ go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00027387g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.33|0|1|0|0|4|0|193; (*GB) gi|39573544|dbj|BAD04063.1| (e_value=2e-44) high-affinity nitrate transporter [Prunus persica];; (*SWP) sp|Q9LXH0|NRT26_ARATH (e_value=7e-40) High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1;; (*TAIR) AT3G45060.1 (e_value=5e-41) | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate transporter 2.6 | chr3:16477671-16479386 REVERSE LENGTH=542;; (*ITAG) Solyc11g069750.1.1 (e_value=9e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00027387g0001.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.66|1|1|3|0|285; (*GB) gi|30698516|dbj|BAC76606.1| (e_value=1e-45) putative high affinity nitrate transporter [Phragmites australis];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=5e-45) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=4e-46) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc11g069750.1.1 (e_value=5e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00027387g0010.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|350539245|ref|NP_001234127.1| (e_value=7e-22) NRT2;3 protein [Solanum lycopersicum];; (*SWP) sp|Q9FJH7|NRT23_ARATH (e_value=3e-22) High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1;; (*TAIR) AT5G60780.1 (e_value=2e-23) | Symbols: ATNRT2.3, NRT2.3 | nitrate transporter 2.3 | chr5:24450839-24452756 FORWARD LENGTH=539;; (*ITAG) Solyc11g069750.1.1 (e_value=8e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00005718g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.6|1|0.75|1|5|0|474; (*GB) gi|359489368|ref|XP_003633913.1| (e_value=0.0) PREDICTED: rho GTPase-activating protein 4-like [Vitis vinifera];; (*SWP) sp|Q54Y72|GACA_DICDI (e_value=3e-22) Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1;; (*TAIR) AT2G46710.1 (e_value=5e-151) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr2:19192105-19194656 FORWARD LENGTH=455;; (*ITAG) Solyc01g096360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79201448-79205523 transcript_region:SL2.40ch01:79201448..79205523+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 ***- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbC26124128g0002.1 protein AED:0.16 eAED:0.16 QI:41|0|0|0.66|1|0.66|3|0|141; (*GB) gi|224090151|ref|XP_002308945.1| (e_value=6e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT3G57440.1 (e_value=6e-16) | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21258732-21260249 FORWARD LENGTH=241;; (*ITAG) Solyc04g015730.1.1 (e_value=2e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:6022644-6024631 transcript_region:SL2.40ch04:6022644..6024631- functional_description:"Unknown Protein (AHRD V1)"; NbS00019359g0004.1 protein AED:0.00 eAED:0.00 QI:47|1|1|1|0|0.33|3|0|130; (*GB) gi|356577071|ref|XP_003556652.1| (e_value=4e-31) PREDICTED: homeobox-leucine zipper protein ATHB-17-like [Glycine max];; (*SWP) sp|Q0JKX1|HOX3_ORYSJ (e_value=1e-24) Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1;; (*TAIR) AT2G01430.1 (e_value=8e-25) | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine zipper protein 17 | chr2:187798-190369 REVERSE LENGTH=275;; (*ITAG) Solyc05g008050.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2470506-2473261 transcript_region:SL2.40ch05:2470506..2473261+ go_terms:GO:0008134,GO:0004842 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 *-*- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0008134,GO:0004842 NbS00058221g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|379056248|dbj|BAL68164.1| (e_value=2e-68) ethylene response factor #44 [Nicotiana tabacum];; (*SWP) sp|O80340|ERF78_ARATH (e_value=4e-15) Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1;; (*TAIR) AT3G15210.1 (e_value=3e-16) | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene responsive element binding factor 4 | chr3:5121472-5122140 FORWARD LENGTH=222;; (*ITAG) Solyc12g005960.1.1 (e_value=5e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:591366-591947 transcript_region:SL2.40ch12:591366..591947- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00050988g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|112; (*ITAG) Solyc09g011430.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4757131-4757559 transcript_region:SL2.40ch09:4757131..4757559+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050988g0006.1 protein AED:0.40 eAED:0.46 QI:63|1|0.75|1|0.66|0.75|4|62|106; (*GB) gi|388513781|gb|AFK44952.1| (e_value=3e-60) unknown [Medicago truncatula];; (*SWP) sp|Q21568|NH2L1_CAEEL (e_value=2e-50) NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1;; (*TAIR) AT4G22380.1 (e_value=2e-60) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:11812041-11812922 REVERSE LENGTH=128;; (*ITAG) Solyc09g092080.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:66580614-66583077 transcript_region:SL2.40ch09:66580614..66583077+ go_terms:GO:0005515,GO:0030515 functional_description:"50S ribosomal protein L7Ae (AHRD V1 **-- B2WJB2_PYRTR); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0005515,GO:0030515 NbS00050988g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|297718792|gb|ADI50287.1| (e_value=0.0) plastid RNA-binding protein 1 [Nicotiana benthamiana];; (*SWP) sp|O80792|RH33_ARATH (e_value=6e-15) Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis thaliana GN=RH33 PE=2 SV=1;; (*TAIR) AT2G37920.1 (e_value=3e-66) | Symbols: emb1513 | copper ion transmembrane transporters | chr2:15869269-15870024 REVERSE LENGTH=251;; (*ITAG) Solyc09g011410.2.1 (e_value=1e-134) genomic_reference:SL2.40ch09 gene_region:4748484-4750762 transcript_region:SL2.40ch09:4748484..4750762- go_terms:GO:0006306 functional_description:"Plastid RNA-binding protein 1 (AHRD V1 ***- D9J062_NICBE)"; GO:0006306 NbS00059935g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|129; (*ITAG) Solyc08g005370.1.1 (e_value=5e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:279332-282745 transcript_region:SL2.40ch08:279332..282745+ functional_description:"F-box family protein (AHRD V1 *-*- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033712g0010.1 protein AED:0.19 eAED:0.32 QI:0|0|0|0.57|0.66|0.57|7|0|363; (*GB) gi|297746396|emb|CBI16452.3| (e_value=3e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G51130.1 (e_value=7e-55) | Symbols: | Nse4, component of Smc5/6 DNA repair complex | chr1:18939480-18941560 REVERSE LENGTH=403;; (*ITAG) Solyc12g041890.1.1 (e_value=1e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40943251-40945691 transcript_region:SL2.40ch12:40943251..40945691- functional_description:"Non-structural maintenance of chromosome element 4 (AHRD V1 *--- B6K0D9_SCHJY); contains Interpro domain(s) IPR014854 Nse4 "; NbS00033712g0007.1 protein AED:0.18 eAED:0.18 QI:21|0.9|0.81|1|1|1|11|0|418; (*GB) gi|2204236|emb|CAA74176.1| (e_value=0.0) enoyl-ACP reductase [Nicotiana tabacum];; (*SWP) sp|P80030|FABI_BRANA (e_value=7e-161) Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2;; (*TAIR) AT2G05990.2 (e_value=1e-165) | Symbols: MOD1, ENR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:2322876-2324867 FORWARD LENGTH=390;; (*ITAG) Solyc01g006450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1058119-1063305 transcript_region:SL2.40ch01:1058119..1063305+ go_terms:GO:0008152,GO:0055114 functional_description:"Enoyl reductase (AHRD V1 ***- P93062_BRANA); contains Interpro domain(s) IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) "; GO:0008152,GO:0055114 NbS00012333g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|250; (*GB) gi|225433296|ref|XP_002282334.1| (e_value=3e-57) PREDICTED: uncharacterized protein LOC100247798 [Vitis vinifera];; (*TAIR) AT4G13450.1 (e_value=4e-37) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr4:7815146-7815904 REVERSE LENGTH=219;; (*ITAG) Solyc09g090850.2.1 (e_value=1e-120) genomic_reference:SL2.40ch09 gene_region:65597148-65598544 transcript_region:SL2.40ch09:65597148..65598544+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- A8IXV1_BRACM); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00012333g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|448; (*GB) gi|224111952|ref|XP_002316034.1| (e_value=1e-86) GRAS family transcription factor [Populus trichocarpa];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=2e-33) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=2e-34) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc01g059960.1.1 (e_value=9e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:62180467-62182194 transcript_region:SL2.40ch01:62180467..62182194+ go_terms:GO:0003700,GO:0042803 functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 **-- A1YWM9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0042803 NbS00012333g0014.1 protein AED:0.13 eAED:0.16 QI:0|0.7|0.72|1|0.5|0.54|11|456|571; (*GB) gi|255574863|ref|XP_002528338.1| (e_value=0.0) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative [Ricinus communis];; (*SWP) sp|B9SQR9|GATB_RICCO (e_value=0.0) Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial OS=Ricinus communis GN=GATB PE=3 SV=1;; (*TAIR) AT1G48520.1 (e_value=0.0) | Symbols: GATB | GLU-ADT subunit B | chr1:17940185-17942540 FORWARD LENGTH=550;; (*ITAG) Solyc09g090840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65590245-65596715 transcript_region:SL2.40ch09:65590245..65596715+ go_terms:GO:0008135,GO:0050567 functional_description:"Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (AHRD V1 ***- D4ZRW8_SPIPL); contains Interpro domain(s) IPR004413 Glutamyl-tRNA(Gln) amidotransferase, B subunit "; GO:0008135,GO:0050567 NbS00012333g0016.1 protein AED:0.23 eAED:0.23 QI:154|1|1|1|0.5|0.6|5|496|140; (*GB) gi|357439809|ref|XP_003590182.1| (e_value=6e-46) hypothetical protein MTR_1g045660 [Medicago truncatula];; (*TAIR) AT1G04555.1 (e_value=5e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1242743-1243949 FORWARD LENGTH=152;; (*ITAG) Solyc09g090820.2.1 (e_value=2e-70) genomic_reference:SL2.40ch09 gene_region:65582435-65586123 transcript_region:SL2.40ch09:65582435..65586123- functional_description:"Unknown Protein (AHRD V1)"; NbS00012333g0109.1 protein AED:0.36 eAED:0.36 QI:0|0.5|0.33|1|0|0.33|3|208|92 NbS00012333g0111.1 protein AED:0.17 eAED:0.17 QI:158|0.83|1|1|0.66|0.71|7|220|258 NbS00009332g0010.1 protein AED:0.13 eAED:0.13 QI:146|1|0.8|1|1|1|5|0|1013; (*GB) gi|359473951|ref|XP_003631380.1| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: protein NLP7-like [Vitis vinifera];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=0.0) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=0.0) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g008410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2829724-2834799 transcript_region:SL2.40ch08:2829724..2834799+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER15_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00009332g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|1|1|3|0|158; (*GB) gi|225426236|ref|XP_002263697.1| (e_value=2e-34) PREDICTED: bidirectional sugar transporter SWEET4 [Vitis vinifera];; (*SWP) sp|A2YZ24|SWT7B_ORYSI (e_value=2e-27) Bidirectional sugar transporter SWEET7b OS=Oryza sativa subsp. indica GN=SWEET7B PE=3 SV=1;; (*TAIR) AT4G10850.1 (e_value=8e-26) | Symbols: SWEET7, AtSWEET7 | Nodulin MtN3 family protein | chr4:6675068-6676718 FORWARD LENGTH=258;; (*ITAG) Solyc08g082770.2.1 (e_value=8e-48) genomic_reference:SL2.40ch08 gene_region:62627026-62629694 transcript_region:SL2.40ch08:62627026..62629694- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LYT4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00009332g0011.1 protein AED:0.16 eAED:0.21 QI:0|0.77|0.7|1|0.88|0.9|10|139|756; (*GB) gi|255574532|ref|XP_002528177.1| (e_value=3e-123) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G80000.2 (e_value=5e-48) | Symbols: | CASC3/Barentsz eIF4AIII binding | chr1:30093195-30096742 FORWARD LENGTH=605;; (*ITAG) Solyc03g120300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62789061-62795056 transcript_region:SL2.40ch03:62789061..62795056+ functional_description:"Glycine-rich protein-like (AHRD V1 ***- Q5ZB64_ORYSJ); contains Interpro domain(s) IPR018545 CASC3/Barentsz eIF4AIII binding "; NbS00000412g0003.1 protein AED:0.31 eAED:0.67 QI:0|0|0|1|0|0|2|0|70 NbS00009586g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|262; (*GB) gi|47825035|gb|AAT38805.1| (e_value=6e-35) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc11g056510.1.1 (e_value=2e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017410g0014.1 protein AED:0.01 eAED:0.01 QI:228|1|0.5|1|1|1|2|0|197; (*GB) gi|147833683|emb|CAN62089.1| (e_value=4e-65) hypothetical protein VITISV_030649 [Vitis vinifera];; (*TAIR) AT1G59710.1 (e_value=3e-57) | Symbols: | Protein of unknown function (DUF569) | chr1:21938623-21939673 FORWARD LENGTH=300;; (*ITAG) Solyc05g006780.2.1 (e_value=2e-98) genomic_reference:SL2.40ch05 gene_region:1400482-1407165 transcript_region:SL2.40ch05:1400482..1407165+ functional_description:"NPH3 domain containing protein-like (AHRD V1 *-*- Q8GVF8_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00017410g0011.1 protein AED:0.40 eAED:0.40 QI:0|0.84|0.85|1|0.38|0.57|14|255|412; (*GB) gi|255558276|ref|XP_002520165.1| (e_value=1e-150) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27150.1 (e_value=9e-57) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9429177-9432068 FORWARD LENGTH=468;; (*ITAG) Solyc05g006760.2.1 (e_value=2e-94) genomic_reference:SL2.40ch05 gene_region:1385245-1391269 transcript_region:SL2.40ch05:1385245..1391269+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 38 (AHRD V1 ***- TTC38_XENTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017410g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|225424867|ref|XP_002268965.1| (e_value=7e-20) PREDICTED: probable serine/threonine-protein kinase At1g18390 [Vitis vinifera];; (*TAIR) AT1G69910.1 (e_value=2e-22) | Symbols: | Protein kinase superfamily protein | chr1:26330166-26332076 FORWARD LENGTH=636;; (*ITAG) Solyc05g006770.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:1391932-1394125 transcript_region:SL2.40ch05:1391932..1394125- functional_description:"Kinase family protein (AHRD V1 *-*- D7MVR5_ARALY)"; NbS00017410g0015.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|2|0|660; (*GB) gi|225424867|ref|XP_002268965.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase At1g18390 [Vitis vinifera];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=2e-75) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G69910.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:26330166-26332076 FORWARD LENGTH=636;; (*ITAG) Solyc05g006770.2.1 (e_value=7e-90) genomic_reference:SL2.40ch05 gene_region:1391932-1394125 transcript_region:SL2.40ch05:1391932..1394125- functional_description:"Kinase family protein (AHRD V1 *-*- D7MVR5_ARALY)"; NbS00025274g0003.1 protein AED:0.31 eAED:0.31 QI:211|0.57|0.62|0.87|0.85|0.87|8|0|345; (*GB) gi|225432945|ref|XP_002284360.1| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100258034 [Vitis vinifera];; (*TAIR) AT3G23090.1 (e_value=5e-41) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr3:8214533-8216983 REVERSE LENGTH=338;; (*ITAG) Solyc06g053780.2.1 (e_value=4e-130) genomic_reference:SL2.40ch06 gene_region:33126272-33128573 transcript_region:SL2.40ch06:33126272..33128573+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00055358g0003.1 protein AED:0.22 eAED:0.33 QI:168|0|0.25|1|0.33|0.25|4|0|246; (*GB) gi|255548624|ref|XP_002515368.1| (e_value=2e-39) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8H2D1|REM8_ARATH (e_value=1e-29) B3 domain-containing protein REM8 OS=Arabidopsis thaliana GN=REM8 PE=2 SV=1;; (*TAIR) AT4G31680.1 (e_value=8e-31) | Symbols: | Transcriptional factor B3 family protein | chr4:15340289-15342080 REVERSE LENGTH=462;; (*ITAG) Solyc08g006240.1.1 (e_value=2e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00016144g0005.1 protein AED:0.04 eAED:0.04 QI:90|1|0.66|1|0|0|3|0|790; (*GB) gi|255564875|ref|XP_002523431.1| (e_value=4e-179) monovalent cation:proton antiporter, putative [Ricinus communis];; (*SWP) sp|Q9FFB8|CHX3_ARATH (e_value=5e-145) Cation/H(+) antiporter 3 OS=Arabidopsis thaliana GN=CHX3 PE=2 SV=1;; (*TAIR) AT5G22900.1 (e_value=4e-146) | Symbols: ATCHX3, CHX3 | cation/H+ exchanger 3 | chr5:7657224-7659868 FORWARD LENGTH=822;; (*ITAG) Solyc05g052320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61733284-61737230 transcript_region:SL2.40ch05:61733284..61737230+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 3 (AHRD V1 **** CHX3_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00021205g0007.1 protein AED:0.19 eAED:0.24 QI:143|0.8|0.72|1|0.6|0.63|11|263|410; (*GB) gi|302142251|emb|CBI19454.3| (e_value=7e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6AYU1|MO4L1_RAT (e_value=2e-44) Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1;; (*TAIR) AT4G37280.1 (e_value=3e-99) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc04g078400.2.1 (e_value=8e-137) genomic_reference:SL2.40ch04 gene_region:60737092-60744774 transcript_region:SL2.40ch04:60737092..60744774+ go_terms:GO:0047485 functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR008676 MRG "; GO:0047485 NbS00021205g0008.1 protein AED:0.33 eAED:0.33 QI:174|1|0.5|1|1|1|4|0|133; (*GB) gi|225459158|ref|XP_002285712.1| (e_value=2e-66) PREDICTED: bet1-like protein At4g14600 [Vitis vinifera];; (*SWP) sp|Q8VXX9|BETL1_ARATH (e_value=2e-61) Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1;; (*TAIR) AT4G14600.1 (e_value=1e-62) | Symbols: | Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137;; (*ITAG) Solyc04g074940.2.1 (e_value=2e-86) genomic_reference:SL2.40ch04 gene_region:58422233-58425274 transcript_region:SL2.40ch04:58422233..58425274- go_terms:GO:0005484 functional_description:"Bet1-like protein At4g14600 (AHRD V1 **-- BETL1_ARATH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00012286g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.5|1|1|1|8|496|702; (*GB) gi|147814811|emb|CAN72342.1| (e_value=0.0) hypothetical protein VITISV_029506 [Vitis vinifera];; (*TAIR) AT1G34550.1 (e_value=0.0) | Symbols: EMB2756 | Protein of unknown function (DUF616) | chr1:12647088-12652646 REVERSE LENGTH=735;; (*ITAG) Solyc11g017420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8334616-8349849 transcript_region:SL2.40ch11:8334616..8349849- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00012286g0005.1 protein AED:0.16 eAED:0.33 QI:0|0|0|1|0|0|4|0|210; (*ITAG) Solyc11g017410.1.1 (e_value=2e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:8332456-8333391 transcript_region:SL2.40ch11:8332456..8333391+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004772g0016.1 protein AED:0.16 eAED:0.19 QI:0|0.2|0.16|1|0|0.16|6|0|314; (*GB) gi|255572666|ref|XP_002527266.1| (e_value=2e-73) lipoxygenase, putative [Ricinus communis];; (*SWP) sp|O22507|LOX17_SOLTU (e_value=2e-55) Probable linoleate 9S-lipoxygenase 7 OS=Solanum tuberosum GN=LOX1.7 PE=2 SV=1;; (*TAIR) AT3G22400.1 (e_value=2e-56) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc09g055890.2.1 (e_value=1e-143) genomic_reference:SL2.40ch09 gene_region:41661108-41663614 transcript_region:SL2.40ch09:41661108..41663614+ go_terms:GO:0046872,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- B9SMP7_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0046872,GO:0055114 NbS00004772g0011.1 protein AED:0.21 eAED:0.24 QI:0|0|0|0.75|0.33|0.25|4|0|658; (*GB) gi|225441635|ref|XP_002276958.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262437 [Vitis vinifera];; (*TAIR) AT1G54385.2 (e_value=5e-179) | Symbols: | ARM repeat superfamily protein | chr1:20301289-20303048 REVERSE LENGTH=560;; (*ITAG) Solyc03g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29339799-29342210 transcript_region:SL2.40ch03:29339799..29342210+ go_terms:GO:0000398,GO:0005488 functional_description:"Binding protein (AHRD V1 *-*- D7L203_ARALY); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398,GO:0005488 NbS00004772g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|0.5|0.33|3|0|376; (*GB) gi|359482119|ref|XP_002276941.2| (e_value=6e-141) PREDICTED: uncharacterized protein LOC100267590 [Vitis vinifera];; (*TAIR) AT1G55370.2 (e_value=6e-82) | Symbols: NDF5 | NDH-dependent cyclic electron flow 5 | chr1:20674852-20676071 FORWARD LENGTH=354;; (*ITAG) Solyc03g062710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29342362-29343967 transcript_region:SL2.40ch03:29342362..29343967- go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein expressed (AHRD V1 **-- Q10CW2_ORYSJ); contains Interpro domain(s) IPR011013 Glycoside hydrolase-type carbohydrate-binding "; GO:0005975 NbS00004772g0019.1 protein AED:0.20 eAED:0.31 QI:3|0.2|0|1|0.8|0.66|6|0|444; (*GB) gi|297739755|emb|CBI29937.3| (e_value=1e-176) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y5A9|YTHD2_HUMAN (e_value=9e-60) YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2;; (*TAIR) AT3G13460.1 (e_value=9e-144) | Symbols: ECT2 | evolutionarily conserved C-terminal region 2 | chr3:4385274-4388220 REVERSE LENGTH=667;; (*ITAG) Solyc01g028860.2.1 (e_value=8e-172) genomic_reference:SL2.40ch01 gene_region:33625778-33629920 transcript_region:SL2.40ch01:33625778..33629920- go_terms:GO:0005515 functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005515 NbS00004772g0008.1 protein AED:0.35 eAED:0.35 QI:0|1|0.33|1|1|1|3|0|353; (*GB) gi|225441631|ref|XP_002282103.1| (e_value=1e-167) PREDICTED: uncharacterized protein LOC100252010 [Vitis vinifera];; (*TAIR) AT1G64770.1 (e_value=1e-134) | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron flow 1 | chr1:24057549-24059415 FORWARD LENGTH=348;; (*ITAG) Solyc03g062720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29344306-29346072 transcript_region:SL2.40ch03:29344306..29346072- go_terms:GO:0005975 functional_description:"Galactose mutarotase-like (AHRD V1 **-- A2Q5N9_MEDTR); contains Interpro domain(s) IPR011013 Glycoside hydrolase-type carbohydrate-binding "; GO:0005975 NbS00004772g0018.1 protein AED:0.17 eAED:0.37 QI:63|0|0|1|0|0|2|0|95 NbS00035734g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.7|0.63|1|0.4|0.54|11|0|363; (*GB) gi|339959595|gb|AEK25530.1| (e_value=0.0) UDP-GlcNac-dolichyl-phosphate N-acetylglucosaminephosphotransferase [Solanum tuberosum];; (*SWP) sp|P0CD61|GPT_DICDI (e_value=3e-77) UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Dictyostelium discoideum GN=alg7 PE=3 SV=1;; (*TAIR) AT2G41490.1 (e_value=4e-160) | Symbols: GPT | UDP-glcnac-adolichol phosphate glcnac-1-p-transferase | chr2:17301762-17304030 FORWARD LENGTH=431;; (*ITAG) Solyc04g016520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7338776-7344302 transcript_region:SL2.40ch04:7338776..7344302- go_terms:GO:0003975 functional_description:"UDP-N-acetylglucosamine dolichyl phosphate N-acetylglucosamine-1-phosphate transferase (AHRD V1 **** Q8TGX0_ASPNG); contains Interpro domain(s) IPR018481 Glycosyl transferase, family 4, conserved region "; GO:0003975 NbS00035734g0006.1 protein AED:0.23 eAED:0.34 QI:0|1|0.4|1|1|1|5|0|572; (*GB) gi|225441355|ref|XP_002276914.1| (e_value=0.0) PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like [Vitis vinifera];; (*SWP) sp|O22212|PRP4_ARATH (e_value=0.0) U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1;; (*TAIR) AT2G41500.1 (e_value=0.0) | Symbols: LIS, EMB2776 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | chr2:17304319-17306855 REVERSE LENGTH=554;; (*ITAG) Solyc04g016510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7335360-7338722 transcript_region:SL2.40ch04:7335360..7338722+ go_terms:GO:0045505 functional_description:"Guanine nucleotide-binding protein subunit beta-4 (AHRD V1 *--* GBB4_HUMAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00003985g0014.1 protein AED:0.03 eAED:0.03 QI:73|0.66|1|1|0.33|0.25|4|31|203; (*GB) gi|356513896|ref|XP_003525644.1| (e_value=6e-70) PREDICTED: uncharacterized protein LOC100801011 [Glycine max];; (*TAIR) AT1G48960.1 (e_value=3e-63) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:18112552-18113550 FORWARD LENGTH=219;; (*ITAG) Solyc03g119840.2.1 (e_value=5e-84) genomic_reference:SL2.40ch03 gene_region:62451425-62454082 transcript_region:SL2.40ch03:62451425..62454082- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KDY5_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00003985g0013.1 protein AED:0.21 eAED:0.22 QI:24|0.90|0.83|1|0.63|0.75|12|1065|600; (*GB) gi|224099297|ref|XP_002311428.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R4R4|LS14A_PONAB (e_value=2e-17) Protein LSM14 homolog A OS=Pongo abelii GN=LSM14A PE=2 SV=1;; (*TAIR) AT1G26110.2 (e_value=6e-37) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc06g069280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39428427-39437309 transcript_region:SL2.40ch06:39428427..39437309- functional_description:"Protein LSM14 homolog A (AHRD V1 *--- LS14A_PONAB); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00040228g0005.1 protein AED:0.16 eAED:0.16 QI:118|0.83|0.84|1|0.75|0.69|13|229|964; (*GB) gi|225442543|ref|XP_002278956.1| (e_value=0.0) PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Vitis vinifera];; (*SWP) sp|Q9GL73|RNZ2_GORGO (e_value=1e-59) Zinc phosphodiesterase ELAC protein 2 OS=Gorilla gorilla gorilla GN=ELAC2 PE=2 SV=1;; (*TAIR) AT3G16260.1 (e_value=0.0) | Symbols: TRZ4 | tRNAse Z4 | chr3:5509397-5513118 FORWARD LENGTH=942;; (*ITAG) Solyc03g120470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62903860-62913100 transcript_region:SL2.40ch03:62903860..62913100- go_terms:GO:0042781 functional_description:"Aquaporin (AHRD V1 *-*- O81186_VERFO); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0042781 NbS00023256g0006.1 protein AED:0.03 eAED:0.03 QI:345|1|1|1|0.66|0.75|4|211|599; (*GB) gi|257831433|gb|ACV71017.1| (e_value=0.0) UPA17 [Capsicum annuum];; (*TAIR) AT4G37740.1 (e_value=9e-69) | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 | chr4:17725533-17727609 REVERSE LENGTH=535;; (*ITAG) Solyc04g077510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60063410-60066582 transcript_region:SL2.40ch04:60063410..60066582+ go_terms:GO:0005515,GO:0016563 functional_description:"Growth regulating factor 1 (Fragment) (AHRD V1 *--- A6MZS4_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005515,GO:0016563 NbS00023256g0008.1 protein AED:0.50 eAED:0.61 QI:0|0|0|1|0|0|3|0|92 NbS00043951g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0.8|1|1|1|5|270|719; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*SWP) sp|Q6ZSG1|RN165_HUMAN (e_value=5e-13) RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1;; (*TAIR) AT5G42940.1 (e_value=5e-78) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc04g078680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60972448-60976501 transcript_region:SL2.40ch04:60972448..60976501+ go_terms:GO:0031177,GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0031177,GO:0008270 NbS00003783g0008.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|554|664; (*GB) gi|359485444|ref|XP_002276750.2| (e_value=2e-75) PREDICTED: uncharacterized protein LOC100245463 [Vitis vinifera];; (*TAIR) AT2G30990.2 (e_value=6e-64) | Symbols: | Protein of unknown function (DUF688) | chr2:13187776-13189761 REVERSE LENGTH=593;; (*ITAG) Solyc07g055140.2.1 (e_value=1e-176) genomic_reference:SL2.40ch07 gene_region:60598618-60600299 transcript_region:SL2.40ch07:60598618..60600299+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007789 Protein of unknown function DUF688 "; NbS00003783g0007.1 protein AED:0.10 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|119 NbS00058576g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|166; (*GB) gi|42557351|dbj|BAD11071.1| (e_value=2e-59) hin1 like protein [Capsicum chinense];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=5e-23) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT5G06320.1 (e_value=2e-36) | Symbols: NHL3 | NDR1/HIN1-like 3 | chr5:1931016-1931711 REVERSE LENGTH=231;; (*ITAG) Solyc01g007240.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:1808368-1809054 transcript_region:SL2.40ch01:1808368..1809054+ functional_description:"NHL3 (Fragment) (AHRD V1 **-- B0ZVP8_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00059544g0003.1 protein AED:0.02 eAED:0.09 QI:0|0|0|1|0|0|2|0|253; (*GB) gi|224123636|ref|XP_002330170.1| (e_value=3e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJ45|GDL83_ARATH (e_value=8e-36) GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana GN=At5g45910 PE=2 SV=1;; (*TAIR) AT5G45910.1 (e_value=6e-37) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18620420-18622264 REVERSE LENGTH=372;; (*ITAG) Solyc01g108640.1.1 (e_value=2e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00032333g0003.1 protein AED:0.03 eAED:0.03 QI:90|1|1|1|1|1|3|266|165; (*GB) gi|255586787|ref|XP_002534010.1| (e_value=7e-87) ARF GTPase activator, putative [Ricinus communis];; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=1e-42) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT1G73580.1 (e_value=6e-79) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:27654841-27655518 FORWARD LENGTH=168;; (*ITAG) Solyc02g091520.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:47368403-47370047 transcript_region:SL2.40ch02:47368403..47370047- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KRJ5_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00061362g0004.1 protein AED:0.11 eAED:0.11 QI:95|1|1|1|1|1|4|594|124; (*GB) gi|15239430|ref|NP_197927.1| (e_value=9e-64) ubiquinol-cytochrome c reductase subunit 7 [Arabidopsis thaliana];; (*SWP) sp|P48502|QCR7_SOLTU (e_value=7e-61) Cytochrome b-c1 complex subunit 7 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G25450.1 (e_value=2e-66) | Symbols: | Cytochrome bd ubiquinol oxidase, 14kDa subunit | chr5:8857036-8857849 FORWARD LENGTH=122;; (*ITAG) Solyc08g067020.2.1 (e_value=2e-63) genomic_reference:SL2.40ch08 gene_region:53114215-53119237 transcript_region:SL2.40ch08:53114215..53119237+ go_terms:GO:0006122 functional_description:"Ubiquinol-cytochrome c reductase complex protein (AHRD V1 ***- B6UBZ9_MAIZE); contains Interpro domain(s) IPR003197 Cytochrome bd ubiquinol oxidase, 14 kDa subunit "; GO:0006122 NbS00023253g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|255584856|ref|XP_002533144.1| (e_value=1e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G22180.1 (e_value=6e-21) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:9428969-9429844 FORWARD LENGTH=291;; (*ITAG) Solyc04g054960.1.1 (e_value=7e-109) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:52645525-52646292 transcript_region:SL2.40ch04:52645525..52646292- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 ***- Q2QY99_ORYSJ)"; NbS00023253g0005.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|0.66|0.5|0.66|3|0|175; (*GB) gi|356572948|ref|XP_003554627.1| (e_value=4e-22) PREDICTED: topless-related protein 3-like [Glycine max];; (*ITAG) Solyc01g100050.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00015202g0009.1 protein AED:0.18 eAED:0.18 QI:109|0.75|0.8|1|1|1|5|214|380; (*GB) gi|60656565|gb|AAX33300.1| (e_value=7e-132) pyruvate decarboxylase 1 [Petunia x hybrida];; (*SWP) sp|A2Y5L9|PDC1_ORYSI (e_value=7e-113) Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1;; (*TAIR) AT4G33070.1 (e_value=9e-122) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr4:15952519-15954676 REVERSE LENGTH=607;; (*ITAG) Solyc10g076510.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58830186-58832733 transcript_region:SL2.40ch10:58830186..58832733- go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase (AHRD V1 **** B0ZS79_PRUAR); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00015202g0012.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|0|0.5|2|0|540; (*GB) gi|34761800|gb|AAQ82053.1| (e_value=2e-139) verticillium wilt disease resistance protein precursor [Solanum torvum];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-64) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G33060.1 (e_value=1e-81) | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808;; (*ITAG) Solyc10g076500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58808007-58810535 transcript_region:SL2.40ch10:58808007..58810535- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00015202g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0|1|1|0.66|3|0|236; (*GB) gi|357506081|ref|XP_003623329.1| (e_value=4e-102) Ammonium transporter 3 member [Medicago truncatula];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=1e-84) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=5e-82) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc10g076480.1.1 (e_value=3e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58796692-58799491 transcript_region:SL2.40ch10:58796692..58799491+ go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9HCZ0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00015202g0013.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|5|0|385; (*GB) gi|34761800|gb|AAQ82053.1| (e_value=1e-107) verticillium wilt disease resistance protein precursor [Solanum torvum];; (*SWP) sp|Q9M2Z1|BAME2_ARATH (e_value=2e-23) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1;; (*TAIR) AT1G45616.1 (e_value=2e-33) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc09g005080.1.1 (e_value=9e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:48645-52064 transcript_region:SL2.40ch09:48645..52064- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00021709g0005.1 protein AED:0.27 eAED:0.27 QI:208|0.75|0.88|1|0.5|0.44|9|304|415; (*GB) gi|225435464|ref|XP_002285466.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase family 3 member F1 [Vitis vinifera];; (*SWP) sp|Q70E96|AL3F1_ARATH (e_value=3e-149) Aldehyde dehydrogenase family 3 member F1 OS=Arabidopsis thaliana GN=ALDH3F1 PE=2 SV=2;; (*TAIR) AT4G36250.1 (e_value=2e-150) | Symbols: ALDH3F1 | aldehyde dehydrogenase 3F1 | chr4:17151029-17153381 FORWARD LENGTH=484;; (*ITAG) Solyc01g011510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:9530257-9544389 transcript_region:SL2.40ch01:9530257..9544389+ go_terms:GO:0055114 functional_description:"Aldehyde dehydrogenase (AHRD V1 ***- Q71LY7_ORYSI); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0055114 NbS00000066g0015.1 protein AED:0.00 eAED:0.00 QI:154|1|1|1|0|0.5|2|353|86 NbS00000066g0014.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|1|1|5|526|333; (*GB) gi|363806694|ref|NP_001242010.1| (e_value=3e-115) uncharacterized protein LOC100796450 [Glycine max];; (*SWP) sp|P37707|B2_DAUCA (e_value=4e-105) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G42050.1 (e_value=6e-106) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:16815630-16816932 FORWARD LENGTH=349;; (*ITAG) Solyc08g082610.2.1 (e_value=7e-162) genomic_reference:SL2.40ch08 gene_region:62494812-62498149 transcript_region:SL2.40ch08:62494812..62498149- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00000066g0020.1 protein AED:0.28 eAED:0.28 QI:65|0.4|0.16|1|0.2|0.33|6|0|563; (*GB) gi|73624747|gb|AAZ79231.1| (e_value=0.0) cellulose synthase-like protein CslG [Nicotiana tabacum];; (*SWP) sp|Q8VYR4|CSLG2_ARATH (e_value=2e-116) Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1;; (*TAIR) AT4G24000.1 (e_value=1e-117) | Symbols: ATCSLG2, CSLG2 | cellulose synthase like G2 | chr4:12462142-12465471 FORWARD LENGTH=722;; (*ITAG) Solyc08g082640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62536639-62541440 transcript_region:SL2.40ch08:62536639..62541440+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IMB3_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00000066g0017.1 protein AED:0.07 eAED:0.07 QI:3|1|1|1|1|1|3|176|136; (*GB) gi|15236980|ref|NP_192830.1| (e_value=7e-51) RNA polymerase II transcriptional coactivator KELP [Arabidopsis thaliana];; (*SWP) sp|O65155|KELP_ARATH (e_value=2e-52) RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1;; (*TAIR) AT4G10920.2 (e_value=2e-53) | Symbols: KELP | transcriptional coactivator p15 (PC4) family protein (KELP) | chr4:6697894-6699103 REVERSE LENGTH=165;; (*ITAG) Solyc08g082580.2.1 (e_value=8e-61) genomic_reference:SL2.40ch08 gene_region:62481272-62484580 transcript_region:SL2.40ch08:62481272..62484580+ go_terms:GO:0030528,GO:0005515 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 *-*- B9EM37_SALSA); contains Interpro domain(s) IPR017415 RNA polymerase II transcriptional coactivator KELP "; GO:0030528,GO:0005515 NbS00000066g0024.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|242; (*GB) gi|255537841|ref|XP_002509987.1| (e_value=9e-107) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93YV9|SKIP8_ARATH (e_value=4e-98) F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1;; (*TAIR) AT4G10925.3 (e_value=3e-99) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr4:6702987-6704283 REVERSE LENGTH=231;; (*ITAG) Solyc08g082560.2.1 (e_value=5e-144) genomic_reference:SL2.40ch08 gene_region:62472243-62478469 transcript_region:SL2.40ch08:62472243..62478469+ functional_description:"F-box family protein (AHRD V1 ***- B9GXK0_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000066g0023.1 protein AED:0.16 eAED:0.19 QI:0|0.33|0|1|0|0.5|4|0|130; (*GB) gi|356513275|ref|XP_003525339.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100810596 [Glycine max];; (*TAIR) AT5G42070.1 (e_value=7e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16819118-16820119 REVERSE LENGTH=164;; (*ITAG) Solyc08g082570.2.1 (e_value=1e-36) genomic_reference:SL2.40ch08 gene_region:62478591-62480879 transcript_region:SL2.40ch08:62478591..62480879+ functional_description:"CccP Conserved Cys-containing protein (IC) (AHRD V1 *-*- Q01E94_OSTTA)"; NbS00000066g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|1|1|2|0|388; (*GB) gi|225426284|ref|XP_002266905.1| (e_value=8e-128) PREDICTED: uncharacterized protein LOC100247840 [Vitis vinifera];; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=1e-27) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT1G64500.1 (e_value=2e-90) | Symbols: | Glutaredoxin family protein | chr1:23953270-23954376 FORWARD LENGTH=368;; (*ITAG) Solyc08g082590.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:62486093-62488178 transcript_region:SL2.40ch08:62486093..62488178+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7KS91_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00059617g0008.1 protein AED:0.08 eAED:0.11 QI:0|1|0.66|1|1|1|3|0|522; (*GB) gi|225427794|ref|XP_002269363.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255631 [Vitis vinifera];; (*SWP) sp|Q69IL4|RF2A_ORYSJ (e_value=4e-29) Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=8e-133) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc01g110480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88940597-88943622 transcript_region:SL2.40ch01:88940597..88943622+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 *-*- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00059617g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|519; (*GB) gi|37983539|gb|AAR06289.1| (e_value=0.0) 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum];; (*SWP) sp|P52418|PUR1_SOYBN (e_value=0.0) Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1;; (*TAIR) AT2G16570.1 (e_value=0.0) | Symbols: ATASE, ATASE1, ASE1 | GLN phosphoribosyl pyrophosphate amidotransferase 1 | chr2:7180424-7182124 REVERSE LENGTH=566;; (*ITAG) Solyc01g110520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88954731-88956779 transcript_region:SL2.40ch01:88954731..88956779- go_terms:GO:0004044 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 *-*- GLMS_METKA); contains Interpro domain(s) IPR005854 Amidophosphoribosyl transferase "; GO:0004044 NbS00019528g0011.1 protein AED:0.44 eAED:0.44 QI:0|0|0.5|1|0|0|2|264|66; (*GB) gi|147842469|emb|CAN63142.1| (e_value=5e-23) hypothetical protein VITISV_034576 [Vitis vinifera];; (*TAIR) AT2G36840.1 (e_value=1e-14) | Symbols: | ACT-like superfamily protein | chr2:15451834-15453550 REVERSE LENGTH=410; NbS00008776g0005.1 protein AED:0.11 eAED:0.12 QI:0|1|1|1|1|1|4|370|463; (*GB) gi|58200405|gb|AAW66458.1| (e_value=0.0) Fas-associated factor 1-like protein [Capsicum annuum];; (*SWP) sp|Q6GQ69|FAF2B_XENLA (e_value=4e-47) FAS-associated factor 2-B OS=Xenopus laevis GN=faf2-b PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=0.0) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc08g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62766921-62770902 transcript_region:SL2.40ch08:62766921..62770902+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 **-- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbS00016556g0001.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|255545852|ref|XP_002513986.1| (e_value=5e-56) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=1e-46) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=1e-47) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc12g087860.1.1 (e_value=7e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030705g0001.1 protein AED:0.09 eAED:0.09 QI:804|1|1|1|0.87|0.88|9|653|500; (*GB) gi|359473485|ref|XP_003631305.1| (e_value=4e-180) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera];; (*SWP) sp|Q9CAA9|BH049_ARATH (e_value=1e-100) Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=7e-103) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc05g010610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4848664-4852023 transcript_region:SL2.40ch05:4848664..4852023+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00030705g0004.1 protein AED:0.37 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|69 NbS00026718g0004.1 protein AED:0.24 eAED:0.26 QI:158|0.75|0.8|1|0.75|0.8|5|341|249; (*GB) gi|30697556|ref|NP_564903.3| (e_value=2e-110) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G67700.2 (e_value=4e-113) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:25374295-25375810 FORWARD LENGTH=231;; (*ITAG) Solyc05g014310.2.1 (e_value=1e-139) genomic_reference:SL2.40ch05 gene_region:8116107-8118432 transcript_region:SL2.40ch05:8116107..8118432- functional_description:"Metalloendopeptidase family-saccharolysin & thimet oligopeptidase (ISS) (AHRD V1 *-*- Q01G48_OSTTA)"; NbS00026718g0006.1 protein AED:0.16 eAED:0.36 QI:0|0|0|1|0|0|2|0|110; (*ITAG) Solyc05g014290.2.1 (e_value=8e-17) genomic_reference:SL2.40ch05 gene_region:8093800-8095104 transcript_region:SL2.40ch05:8093800..8095104- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00037864g0003.1 protein AED:0.12 eAED:0.12 QI:215|0.87|0.88|1|0.37|0.44|9|285|598; (*GB) gi|356519419|ref|XP_003528370.1| (e_value=1e-174) PREDICTED: katanin p60 ATPase-containing subunit-like [Glycine max];; (*SWP) sp|Q9SEX2|KTNA1_ARATH (e_value=1e-169) Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1;; (*TAIR) AT1G80350.1 (e_value=8e-171) | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523;; (*ITAG) Solyc11g050880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:41663097-41667358 transcript_region:SL2.40ch11:41663097..41667358+ go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 **-- B6TID9_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00037864g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc00g313030.1.1 (e_value=5e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043294g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|0.77|0.8|10|201|372; (*GB) gi|297744297|emb|CBI37267.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5B4C9|ATG26_EMENI (e_value=4e-50) Sterol 3-beta-glucosyltransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg26 PE=3 SV=1;; (*TAIR) AT3G07020.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2217841-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc04g051150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:48879825-48894993 transcript_region:SL2.40ch04:48879825..48894993+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00045077g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.81|0.91|12|331|560; (*GB) gi|225462348|ref|XP_002269152.1| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 37 [Vitis vinifera];; (*SWP) sp|Q941Q3|C3H37_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1;; (*TAIR) AT3G12680.1 (e_value=0.0) | Symbols: HUA1 | floral homeotic protein (HUA1) | chr3:4025276-4028999 REVERSE LENGTH=524;; (*ITAG) Solyc12g017410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6660084-6668349 transcript_region:SL2.40ch12:6660084..6668349- go_terms:GO:0003723 functional_description:"Zinc finger CCCH domain-containing protein 37 (AHRD V1 ***- C3H37_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003723 NbS00002073g0003.1 protein AED:0.20 eAED:0.20 QI:206|0.8|0.83|1|1|1|6|386|326; (*GB) gi|350538545|ref|NP_001234092.1| (e_value=0.0) sorbitol related enzyme [Solanum lycopersicum];; (*SWP) sp|Q1PSI9|IDND_VITVI (e_value=0.0) L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2;; (*TAIR) AT5G51970.2 (e_value=0.0) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:21111820-21113284 FORWARD LENGTH=364;; (*ITAG) Solyc01g006510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1093865-1098227 transcript_region:SL2.40ch01:1093865..1098227+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"L-threonine 3-dehydrogenase (AHRD V1 ***- TDH_ANADF); contains Interpro domain(s) IPR002328 Alcohol dehydrogenase, zinc-containing, conserved site "; GO:0008152,GO:0016491,GO:0055114 NbS00035848g0001.1 protein AED:0.21 eAED:0.38 QI:0|0|0|1|0|0|4|0|123; (*ITAG) Solyc07g019500.2.1 (e_value=2e-39) genomic_reference:SL2.40ch07 gene_region:11851886-11852770 transcript_region:SL2.40ch07:11851886..11852770+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035503g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|432; (*GB) gi|224138190|ref|XP_002322752.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O80437|GPAT6_ARATH (e_value=2e-135) Glycerol-3-phosphate acyltransferase 6 OS=Arabidopsis thaliana GN=GPAT6 PE=1 SV=1;; (*TAIR) AT2G38110.1 (e_value=1e-136) | Symbols: ATGPAT6, GPAT6 | glycerol-3-phosphate acyltransferase 6 | chr2:15952816-15955364 REVERSE LENGTH=501;; (*ITAG) Solyc04g005840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:538803-541051 transcript_region:SL2.40ch04:538803..541051+ go_terms:GO:0004366,GO:0003841 functional_description:"ER glycerol-phosphate acyltransferase (AHRD V1 **** B9S2F2_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0003841 NbS00020717g0002.1 protein AED:0.16 eAED:0.30 QI:0|0|0.5|1|0|0|2|0|114; (*GB) gi|357435983|ref|XP_003588267.1| (e_value=4e-27) hypothetical protein MTR_1g005080 [Medicago truncatula];; (*ITAG) Solyc00g013190.1.1 (e_value=1e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10692250-10692603 transcript_region:SL2.40ch00:10692250..10692603- functional_description:"Unknown Protein (AHRD V1)"; NbS00001541g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0.33|1|1|1|3|0|300; (*GB) gi|186511064|ref|NP_191030.3| (e_value=4e-92) putative inorganic phosphate transporter 1-7 [Arabidopsis thaliana];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=1e-93) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=9e-95) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g034200.1.1 (e_value=2e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20519555-20521159 transcript_region:SL2.40ch06:20519555..20521159+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00057029g0001.1 protein AED:0.34 eAED:0.43 QI:30|-1|0|1|-1|1|1|0|64; (*GB) gi|117107|sp|P19173.3|COX5C_IPOBA (e_value=1e-34) RecName: Full=Cytochrome c oxidase subunit 5C; AltName: Full=Cytochrome c oxidase polypeptide Vc;; (*SWP) sp|P19173|COX5C_IPOBA (e_value=3e-36) Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3;; (*TAIR) AT5G40382.1 (e_value=2e-31) | Symbols: | Cytochrome c oxidase subunit Vc family protein | chr5:16155486-16155683 REVERSE LENGTH=65;; (*ITAG) Solyc01g079420.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:71005941-71009193 transcript_region:SL2.40ch01:71005941..71009193+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 *-*- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc "; GO:0005746 NbS00057029g0002.1 protein AED:0.12 eAED:0.13 QI:0|0.73|0.75|0.93|1|1|16|538|903; (*GB) gi|359488677|ref|XP_002273777.2| (e_value=0.0) PREDICTED: polyribonucleotide nucleotidyltransferase-like [Vitis vinifera];; (*SWP) sp|B3DZ86|PNP_METI4 (e_value=4e-131) Polyribonucleotide nucleotidyltransferase OS=Methylacidiphilum infernorum (isolate V4) GN=pnp PE=3 SV=2;; (*TAIR) AT5G14580.1 (e_value=0.0) | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991;; (*ITAG) Solyc02g086600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43834786-43843201 transcript_region:SL2.40ch02:43834786..43843201- go_terms:GO:0003729 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- Q1PVN2_9BACT); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0003729 NbS00020748g0007.1 protein AED:0.36 eAED:0.37 QI:0|0.64|0.66|0.86|0.85|0.8|15|0|555; (*GB) gi|587562|emb|CAA56520.1| (e_value=0.0) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|P29677|MPPA_SOLTU (e_value=0.0) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.1 (e_value=2e-174) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323692-19326771 REVERSE LENGTH=503;; (*ITAG) Solyc12g008630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00028020g0102.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|124 NbS00018738g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.91|1|1|1|12|780|533; (*GB) gi|225435336|ref|XP_002285216.1| (e_value=0.0) PREDICTED: protein-tyrosine sulfotransferase [Vitis vinifera];; (*SWP) sp|Q3EDG5|TPST_ARATH (e_value=0.0) Protein-tyrosine sulfotransferase OS=Arabidopsis thaliana GN=TPST PE=1 SV=3;; (*TAIR) AT1G08030.1 (e_value=0.0) | Symbols: TPST | tyrosylprotein sulfotransferase | chr1:2489575-2492741 REVERSE LENGTH=500;; (*ITAG) Solyc11g069520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51214912-51221662 transcript_region:SL2.40ch11:51214912..51221662- functional_description:"Protein-tyrosine sulfotransferase (AHRD V1 ***- TPST_ARATH)"; NbS00018738g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|0.66|1|1|3|0|306; (*GB) gi|12711287|emb|CAC28528.1| (e_value=0.0) GATA-1 zinc finger protein [Nicotiana tabacum];; (*SWP) sp|Q6DBP8|GAT11_ARATH (e_value=7e-42) GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1;; (*TAIR) AT1G08010.2 (e_value=5e-43) | Symbols: GATA11 | GATA transcription factor 11 | chr1:2486202-2487402 REVERSE LENGTH=303;; (*ITAG) Solyc11g069510.1.1 (e_value=1e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51208122-51211616 transcript_region:SL2.40ch11:51208122..51211616- go_terms:GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00030849g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|296083323|emb|CBI22959.3| (e_value=5e-13) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G06780.1 (e_value=2e-15) | Symbols: | glycine-rich protein | chr3:2143634-2144239 FORWARD LENGTH=201;; (*ITAG) Solyc07g055660.2.1 (e_value=5e-25) genomic_reference:SL2.40ch07 gene_region:60945365-60946499 transcript_region:SL2.40ch07:60945365..60946499+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030849g0008.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|5|0|234; (*GB) gi|34809445|gb|AAQ82660.1| (e_value=2e-124) Pto-like serine/threonine kinase [Capsicum chinense];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=3e-103) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=2e-104) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=3e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00059466g0005.1 protein AED:0.13 eAED:0.13 QI:432|1|1|1|0|0.33|3|165|503; (*GB) gi|224082690|ref|XP_002306797.1| (e_value=9e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=5e-111) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G03840.1 (e_value=4e-112) | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506;; (*ITAG) Solyc09g065670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59497857-59502755 transcript_region:SL2.40ch09:59497857..59502755+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MN23_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00008254g0011.1 protein AED:0.19 eAED:0.19 QI:30|0.8|0.83|1|1|1|6|431|462; (*GB) gi|81074755|gb|ABB55373.1| (e_value=0.0) polygalacturonase-like protein-like [Solanum tuberosum];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=2e-140) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G16850.1 (e_value=7e-180) | Symbols: | Pectin lyase-like superfamily protein | chr3:5748692-5750981 FORWARD LENGTH=455;; (*ITAG) Solyc09g075460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62664675-62668645 transcript_region:SL2.40ch09:62664675..62668645+ go_terms:GO:0005975 functional_description:"Polygalacturonase-like protein-like (AHRD V1 ***- Q2XTD7_SOLTU); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00008254g0010.1 protein AED:0.23 eAED:0.24 QI:23|0.4|0.16|1|0.8|0.5|6|0|418; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=0.0) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-169) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-170) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00008254g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=3e-56) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=4e-24) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=3e-25) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=5e-52) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00036540g0006.1 protein AED:0.01 eAED:0.01 QI:73|1|0.87|1|0.57|0.62|8|489|194; (*GB) gi|225437229|ref|XP_002281971.1| (e_value=4e-94) PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis vinifera];; (*SWP) sp|Q9Y535|RPC8_HUMAN (e_value=6e-33) DNA-directed RNA polymerase III subunit RPC8 OS=Homo sapiens GN=POLR3H PE=1 SV=1;; (*TAIR) AT1G06790.1 (e_value=2e-83) | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087645-2089287 FORWARD LENGTH=204;; (*ITAG) Solyc07g006250.2.1 (e_value=1e-55) genomic_reference:SL2.40ch07 gene_region:1052734-1054730 transcript_region:SL2.40ch07:1052734..1054730+ functional_description:"DNA-directed RNA polymerase III subunit RPC8 (AHRD V1 ***- RPC8_HUMAN); contains Interpro domain(s) IPR013238 RNA polymerase III, subunit Rpc25 "; NbS00036540g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|1|0|0|3|0|313; (*GB) gi|297745814|emb|CBI15870.3| (e_value=5e-122) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22918|GDL41_ARATH (e_value=1e-99) GDSL esterase/lipase At2g30220 OS=Arabidopsis thaliana GN=At2g30220 PE=2 SV=1;; (*TAIR) AT2G30220.1 (e_value=7e-101) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:12891266-12892537 REVERSE LENGTH=358;; (*ITAG) Solyc04g007440.1.1 (e_value=1e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1108529-1111896 transcript_region:SL2.40ch04:1108529..1111896+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g58430 (AHRD V1 ***- GDL23_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00036540g0004.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|135 NbS00008789g0010.1 protein AED:0.16 eAED:0.16 QI:973|0|1|1|1|1|2|155|125 NbS00008789g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.9|0.63|1|0.4|0.36|11|0|533; (*GB) gi|350539607|ref|NP_001233960.1| (e_value=0.0) mitogen-activated protein kinase 14 [Solanum lycopersicum];; (*SWP) sp|Q9C9U4|MPK15_ARATH (e_value=0.0) Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3;; (*TAIR) AT1G73670.1 (e_value=0.0) | Symbols: ATMPK15, MPK15 | MAP kinase 15 | chr1:27700212-27703168 FORWARD LENGTH=576;; (*ITAG) Solyc04g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1389688-1396477 transcript_region:SL2.40ch04:1389688..1396477- go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase (AHRD V1 ***- Q1W2K7_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008789g0102.1 protein AED:0.04 eAED:0.04 QI:281|1|1|1|0.83|0.71|7|632|619 NbS00008789g0104.1 protein AED:0.22 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|145 NbS00054198g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.85|0.37|1|0.71|0.87|8|0|798; (*GB) gi|359473569|ref|XP_002265426.2| (e_value=3e-158) PREDICTED: uncharacterized protein LOC100254476 [Vitis vinifera];; (*TAIR) AT3G01810.2 (e_value=3e-116) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink). | chr3:289218-292375 FORWARD LENGTH=859;; (*ITAG) Solyc02g092870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48405997-48410328 transcript_region:SL2.40ch02:48405997..48410328- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00054198g0006.1 protein AED:0.07 eAED:0.15 QI:0|0.5|0.4|1|0.25|0.2|5|15|216; (*GB) gi|255567917|ref|XP_002524936.1| (e_value=5e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092880.2.1 (e_value=2e-58) genomic_reference:SL2.40ch02 gene_region:48412380-48413638 transcript_region:SL2.40ch02:48412380..48413638- functional_description:"Unknown Protein (AHRD V1)"; NbS00045356g0109.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|0.75|1|1|4|0|398 NbS00020685g0013.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|1|1|3|258|138; (*GB) gi|224125566|ref|XP_002329836.1| (e_value=3e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g077720.2.1 (e_value=5e-44) genomic_reference:SL2.40ch02 gene_region:37183372-37184656 transcript_region:SL2.40ch02:37183372..37184656+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020685g0001.1 protein AED:0.17 eAED:0.17 QI:158|0.42|0.75|0.75|0.85|0.75|8|2165|209; (*ITAG) Solyc02g077690.2.1 (e_value=1e-36) genomic_reference:SL2.40ch02 gene_region:37157811-37162830 transcript_region:SL2.40ch02:37157811..37162830+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020685g0015.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|1|1|2|0|167; (*GB) gi|110826035|gb|ABH01084.1| (e_value=3e-37) putative ROX1 [Nicotiana tabacum];; (*ITAG) Solyc02g077710.1.1 (e_value=3e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37172109-37173137 transcript_region:SL2.40ch02:37172109..37173137+ functional_description:"E6-2 protein kinase (AHRD V1 *-*- B6E139_GOSHI)"; NbS00023042g0004.1 protein AED:0.08 eAED:0.08 QI:113|1|1|1|0.33|0.28|7|318|198; (*GB) gi|224108295|ref|XP_002314792.1| (e_value=1e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAB7|PXG4_ARATH (e_value=1e-71) Probable peroxygenase 4 OS=Arabidopsis thaliana GN=PXG4 PE=1 SV=1;; (*TAIR) AT1G70670.1 (e_value=7e-73) | Symbols: | Caleosin-related family protein | chr1:26644830-26645970 FORWARD LENGTH=195;; (*ITAG) Solyc01g005400.2.1 (e_value=8e-112) genomic_reference:SL2.40ch01 gene_region:280019-283591 transcript_region:SL2.40ch01:280019..283591+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00014638g0006.1 protein AED:0.20 eAED:0.20 QI:37|1|1|1|0.5|0.66|3|341|247; (*GB) gi|114145390|dbj|BAF30984.1| (e_value=3e-145) basic helix-loop-helix protein [Nicotiana tabacum];; (*SWP) sp|Q9FIX5|BH092_ARATH (e_value=2e-31) Transcription factor bHLH92 OS=Arabidopsis thaliana GN=BHLH92 PE=2 SV=1;; (*TAIR) AT5G43650.1 (e_value=2e-32) | Symbols: BHLH92 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:17533310-17534758 REVERSE LENGTH=247;; (*ITAG) Solyc09g083360.2.1 (e_value=5e-97) genomic_reference:SL2.40ch09 gene_region:64419034-64421479 transcript_region:SL2.40ch09:64419034..64421479+ go_terms:GO:0003700 functional_description:"Basic helix-loop-helix protein (AHRD V1 ***- Q0KK48_TOBAC); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014638g0001.1 protein AED:0.17 eAED:0.17 QI:694|0|0.5|1|0|1|2|375|107; (*GB) gi|255551941|ref|XP_002517015.1| (e_value=1e-65) 40S ribosomal protein S15, putative [Ricinus communis];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=4e-66) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09510.1 (e_value=2e-62) | Symbols: | Ribosomal protein S19 family protein | chr5:2955698-2956554 REVERSE LENGTH=152;; (*ITAG) Solyc06g053820.2.1 (e_value=6e-68) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00014638g0107.1 protein AED:0.01 eAED:0.01 QI:58|1|1|1|1|1|2|304|182 NbS00005622g0014.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|288; (*GB) gi|90656516|gb|ABD96607.1| (e_value=0.0) xyloglucan endotransglucosylase XET1 [Capsicum annuum];; (*SWP) sp|Q38911|XTH15_ARATH (e_value=3e-128) Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1;; (*TAIR) AT4G14130.1 (e_value=2e-129) | Symbols: XTR7, XTH15 | xyloglucan endotransglucosylase/hydrolase 15 | chr4:8137161-8138196 REVERSE LENGTH=289;; (*ITAG) Solyc12g017240.1.1 (e_value=7e-178) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6426369-6427448 transcript_region:SL2.40ch12:6426369..6427448- go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 ***- C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00005622g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|0.5|0|3|0|301; (*GB) gi|350535953|ref|NP_001234478.1| (e_value=5e-130) xyloglucan endotransglucosylase-hydrolase XTH9 precursor [Solanum lycopersicum];; (*SWP) sp|Q8LG58|XTH16_ARATH (e_value=5e-95) Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2;; (*TAIR) AT3G23730.1 (e_value=4e-96) | Symbols: XTH16 | xyloglucan endotransglucosylase/hydrolase 16 | chr3:8550222-8551248 FORWARD LENGTH=291;; (*ITAG) Solyc07g055990.2.1 (e_value=6e-142) genomic_reference:SL2.40ch07 gene_region:61215070-61217037 transcript_region:SL2.40ch07:61215070..61217037+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 **** C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00005622g0012.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.5|1|1|2|0|116 NbS00005622g0015.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|0|0|2|0|93; (*ITAG) Solyc01g111490.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00041345g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|350539147|ref|NP_001234377.1| (e_value=4e-52) DNAJ-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=3e-27) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT2G17880.1 (e_value=4e-30) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160;; (*ITAG) Solyc04g081530.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63070273-63070740 transcript_region:SL2.40ch04:63070273..63070740+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SUM8_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00052540g0007.1 protein AED:0.07 eAED:0.07 QI:227|1|0.9|1|1|1|10|148|833; (*GB) gi|359482496|ref|XP_002274314.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248075 [Vitis vinifera];; (*TAIR) AT3G13990.2 (e_value=6e-169) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:4625708-4630383 REVERSE LENGTH=847;; (*ITAG) Solyc12g049230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46080723-46092167 transcript_region:SL2.40ch12:46080723..46092167+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q69NN2_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00053044g0007.1 protein AED:0.21 eAED:0.22 QI:16|1|0.75|1|1|1|4|788|404; (*GB) gi|356547575|ref|XP_003542186.1| (e_value=1e-160) PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Glycine max];; (*SWP) sp|Q9LUA9|COL10_ARATH (e_value=7e-121) Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1;; (*TAIR) AT5G48250.1 (e_value=6e-122) | Symbols: | B-box type zinc finger protein with CCT domain | chr5:19561719-19563113 REVERSE LENGTH=373;; (*ITAG) Solyc07g045180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55614263-55620975 transcript_region:SL2.40ch07:55614263..55620975+ go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005515,GO:0003700 NbS00053044g0008.1 protein AED:0.18 eAED:0.18 QI:103|1|1|1|0.71|0.87|8|547|319; (*GB) gi|224129238|ref|XP_002320535.1| (e_value=6e-85) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48240.1 (e_value=6e-82) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr5:19559301-19561153 FORWARD LENGTH=309;; (*ITAG) Solyc05g005730.2.1 (e_value=4e-104) genomic_reference:SL2.40ch05 gene_region:537018-540764 transcript_region:SL2.40ch05:537018..540764+ functional_description:"RRP15-like protein (AHRD V1 *-*- C1C024_9MAXI); contains Interpro domain(s) IPR012459 Protein of unknown function DUF1665 "; NbS00032437g0002.1 protein AED:0.44 eAED:0.67 QI:8|0|0|1|0|0|2|0|151; (*GB) gi|296083215|emb|CBI22851.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G49540.1 (e_value=4e-25) | Symbols: | Rab5-interacting family protein | chr5:20104804-20105609 REVERSE LENGTH=114;; (*ITAG) Solyc01g058280.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:58787500-58791252 transcript_region:SL2.40ch01:58787500..58791252- functional_description:"Transmembrane protein 93 (AHRD V1 ***- B0WGS0_CULQU); contains Interpro domain(s) IPR008504 Protein of unknown function DUF786 "; NbS00020946g0009.1 protein AED:0.20 eAED:0.20 QI:143|0.90|0.91|1|0.63|0.58|12|139|257; (*GB) gi|297740356|emb|CBI30538.3| (e_value=3e-144) unnamed protein product [Vitis vinifera];; (*SWP) sp|P53078|SDT1_YEAST (e_value=3e-16) Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDT1 PE=1 SV=1;; (*TAIR) AT5G02230.2 (e_value=1e-119) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:449132-450507 FORWARD LENGTH=280;; (*ITAG) Solyc09g010940.2.1 (e_value=5e-152) genomic_reference:SL2.40ch09 gene_region:4278272-4282087 transcript_region:SL2.40ch09:4278272..4282087- go_terms:GO:0016787,GO:0008152 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 ***- D5QKK7_METTR); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0016787,GO:0008152 NbS00020946g0008.1 protein AED:0.03 eAED:0.03 QI:199|1|1|1|1|1|3|0|263; (*GB) gi|225440394|ref|XP_002270859.1| (e_value=1e-77) PREDICTED: probable WRKY transcription factor 49 [Vitis vinifera];; (*SWP) sp|Q9FHR7|WRK49_ARATH (e_value=3e-40) Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1;; (*TAIR) AT5G43290.1 (e_value=2e-41) | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding protein 49 | chr5:17371987-17373083 REVERSE LENGTH=274;; (*ITAG) Solyc09g010960.2.1 (e_value=4e-117) genomic_reference:SL2.40ch09 gene_region:4315614-4317328 transcript_region:SL2.40ch09:4315614..4317328- go_terms:GO:0045449 functional_description:"WRKY transcription factor 17 (AHRD V1 *-*- Q7E0X2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010002g0011.1 protein AED:0.06 eAED:0.06 QI:110|0|0.5|0.5|1|1|4|300|184; (*GB) gi|147845835|emb|CAN82190.1| (e_value=4e-23) hypothetical protein VITISV_031115 [Vitis vinifera];; (*TAIR) AT3G27160.1 (e_value=9e-21) | Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183;; (*ITAG) Solyc03g110930.2.1 (e_value=8e-35) genomic_reference:SL2.40ch03 gene_region:55709877-55712968 transcript_region:SL2.40ch03:55709877..55712968+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S21, chloroplastic (Fragment) (AHRD V1 *--- RR21_SPIOL); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00010002g0009.1 protein AED:0.30 eAED:0.30 QI:277|0.77|0.8|1|1|1|10|652|373; (*GB) gi|224119594|ref|XP_002318112.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ASX5|Y5520_ARATH (e_value=2e-22) Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1 SV=1;; (*TAIR) AT5G50330.1 (e_value=2e-105) | Symbols: | Protein kinase superfamily protein | chr5:20485406-20488563 REVERSE LENGTH=479;; (*ITAG) Solyc03g110940.2.1 (e_value=1e-142) genomic_reference:SL2.40ch03 gene_region:55715212-55723689 transcript_region:SL2.40ch03:55715212..55723689+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-- ADCK1_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00010002g0014.1 protein AED:0.42 eAED:0.81 QI:0|0|0|1|0|0.25|4|0|162; (*ITAG) Solyc06g069500.2.1 (e_value=5e-14) genomic_reference:SL2.40ch06 gene_region:39664520-39673451 transcript_region:SL2.40ch06:39664520..39673451+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00010002g0015.1 protein AED:0.51 eAED:0.93 QI:0|0|0|0.5|1|1|2|0|165; (*ITAG) Solyc06g069500.2.1 (e_value=8e-28) genomic_reference:SL2.40ch06 gene_region:39664520-39673451 transcript_region:SL2.40ch06:39664520..39673451+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00010002g0105.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|610 NbS00010002g0101.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|601 NbS00010002g0119.1 protein AED:0.28 eAED:0.28 QI:74|0.83|0.85|1|0.83|0.85|7|336|221 NbS00010002g0116.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|198|170 NbS00010002g0103.1 protein AED:0.02 eAED:0.03 QI:161|1|0.5|1|0|0|2|0|377 NbS00010002g0109.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|61 NbS00002674g0006.1 protein AED:0.33 eAED:0.33 QI:149|1|0.75|1|0|0.25|4|401|114; (*GB) gi|225431922|ref|XP_002276956.1| (e_value=3e-77) PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis vinifera];; (*SWP) sp|Q32P73|RPB9_BOVIN (e_value=3e-48) DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=2 SV=1;; (*TAIR) AT3G16980.1 (e_value=5e-76) | Symbols: NRPB9A, NRPD9A, NRPE9A | RNA polymerases M/15 Kd subunit | chr3:5794526-5795699 FORWARD LENGTH=114;; (*ITAG) Solyc05g053430.2.1 (e_value=6e-85) genomic_reference:SL2.40ch05 gene_region:62659706-62663709 transcript_region:SL2.40ch05:62659706..62663709- go_terms:GO:0004672,GO:0003899 functional_description:"DNA-directed RNA polymerase subunit (AHRD V1 **** A5AGZ7_VITVI); contains Interpro domain(s) IPR001529 DNA-directed RNA polymerase, M/15 kDa subunit "; GO:0004672,GO:0003899 NbS00002674g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|255556358|ref|XP_002519213.1| (e_value=2e-79) DELLA protein RGL1, putative [Ricinus communis];; (*SWP) sp|Q8GXW1|RGL2_ARATH (e_value=1e-37) DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2;; (*TAIR) AT3G03450.1 (e_value=9e-39) | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547;; (*ITAG) Solyc05g053420.1.1 (e_value=2e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62658203-62659621 transcript_region:SL2.40ch05:62658203..62659621+ go_terms:GO:0003700 functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 **-- A1YWR4_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005246g0007.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.5|1|1|2|171|135 NbS00005246g0006.1 protein AED:0.04 eAED:0.04 QI:113|1|1|1|1|1|4|204|566; (*GB) gi|319993027|emb|CBY44654.1| (e_value=0.0) pectin methyl esterase [Solanum tuberosum];; (*SWP) sp|P09607|PME21_SOLLC (e_value=0.0) Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2;; (*TAIR) AT1G11580.1 (e_value=0.0) | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557;; (*ITAG) Solyc07g064190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63666825-63668703 transcript_region:SL2.40ch07:63666825..63668703+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RXQ4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00050773g0007.1 protein AED:0.32 eAED:0.32 QI:95|0.66|0.71|1|0.66|0.57|7|910|368; (*GB) gi|77999240|gb|ABB16967.1| (e_value=7e-79) unknown [Solanum tuberosum];; (*SWP) sp|Q9XF19|AB21I_ARATH (e_value=3e-42) ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1;; (*TAIR) AT3G27090.1 (e_value=8e-51) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:9990020-9991407 FORWARD LENGTH=296;; (*ITAG) Solyc02g068120.2.1 (e_value=1e-72) genomic_reference:SL2.40ch02 gene_region:32736345-32741058 transcript_region:SL2.40ch02:32736345..32741058- functional_description:"Gda-1 (AHRD V1 **-- B6TDG4_MAIZE); contains Interpro domain(s) IPR013089 Kelch related "; NbS00007859g0001.1 protein AED:0.36 eAED:0.44 QI:5|0.83|0.71|1|1|1|7|0|172; (*GB) gi|255548513|ref|XP_002515313.1| (e_value=3e-76) ctp synthase, putative [Ricinus communis];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=3e-29) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT4G02120.1 (e_value=1e-72) | Symbols: | CTP synthase family protein | chr4:940873-944097 FORWARD LENGTH=556;; (*ITAG) Solyc01g079650.2.1 (e_value=2e-84) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00019344g0003.1 protein AED:0.38 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|79; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=2e-45) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|Q9C9M7|CDKD2_ARATH (e_value=6e-44) Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1;; (*TAIR) AT1G66750.1 (e_value=5e-45) | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4 | CDK-activating kinase 4 | chr1:24894775-24897015 FORWARD LENGTH=348;; (*ITAG) Solyc08g081280.2.1 (e_value=6e-50) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007935g0004.1 protein AED:0.18 eAED:0.20 QI:374|0.81|0.83|1|0.90|0.91|12|449|673; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=0.0) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=0.0) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc05g017980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19336286-19343775 transcript_region:SL2.40ch05:19336286..19343775+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00049839g0002.1 protein AED:0.44 eAED:0.64 QI:0|0|0|0.66|1|1|3|0|97 NbS00012788g0005.1 protein AED:0.00 eAED:0.00 QI:177|1|1|1|1|1|2|237|354; (*GB) gi|297740387|emb|CBI30569.3| (e_value=5e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80928|DOF24_ARATH (e_value=7e-46) Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1;; (*TAIR) AT2G37590.1 (e_value=6e-47) | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one finger 2.4 | chr2:15769292-15770497 FORWARD LENGTH=330;; (*ITAG) Solyc10g086440.1.1 (e_value=3e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64586878-64588156 transcript_region:SL2.40ch10:64586878..64588156- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00032150g0002.1 protein AED:0.47 eAED:0.59 QI:282|0.5|0.66|1|0|0|3|0|54 NbS00032150g0005.1 protein AED:0.44 eAED:0.54 QI:0|0.75|0.4|1|0.5|0.8|5|0|156; (*GB) gi|34452085|gb|AAQ72499.1| (e_value=8e-68) MADS-box protein 14 [Petunia x hybrida];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=5e-33) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT3G57230.1 (e_value=2e-32) | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240;; (*ITAG) Solyc02g091550.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00032150g0004.1 protein AED:0.50 eAED:1.00 QI:0|0|0|0.75|0.66|0.75|4|0|76 NbS00009600g0008.1 protein AED:0.04 eAED:0.04 QI:93|1|1|1|1|1|3|513|161; (*GB) gi|83283959|gb|ABC01887.1| (e_value=4e-53) unknown [Solanum tuberosum];; (*ITAG) Solyc08g076520.2.1 (e_value=2e-61) genomic_reference:SL2.40ch08 gene_region:57672699-57674073 transcript_region:SL2.40ch08:57672699..57674073+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023562g0010.1 protein AED:0.08 eAED:0.08 QI:39|0.9|0.81|1|1|1|11|209|543; (*GB) gi|356534629|ref|XP_003535855.1| (e_value=0.0) PREDICTED: carboxyl-terminal-processing protease-like [Glycine max];; (*SWP) sp|P42784|CTPA_SYNP2 (e_value=2e-76) Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ctpA PE=3 SV=2;; (*TAIR) AT3G57680.1 (e_value=0.0) | Symbols: | Peptidase S41 family protein | chr3:21381054-21383629 FORWARD LENGTH=519;; (*ITAG) Solyc03g059260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:25561139-25565934 transcript_region:SL2.40ch03:25561139..25565934- go_terms:GO:0004252 functional_description:"Carboxyl-terminal-processing protease (AHRD V1 ***- B6T6L2_MAIZE); contains Interpro domain(s) IPR004447 Peptidase S41A, C-terminal protease "; GO:0004252 NbS00023562g0004.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|63 NbS00037083g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0|3|0|179; (*GB) gi|351653888|ref|YP_004891613.1| (e_value=2e-53) accD gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|P12219|ACCD_TOBAC (e_value=5e-55) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Nicotiana tabacum GN=accD PE=1 SV=2;; (*ITAG) ATCG00500.1 (e_value=1e-24) | Symbols: ACCD | acetyl-CoA carboxylase carboxyl transferase subunit beta | chrC:57075-58541 FORWARD LENGTH=488;; (*ITAG) Solyc01g007340.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:1854314-1856231 transcript_region:SL2.40ch01:1854314..1856231+ go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (AHRD V1 ***- ACCD_EPIVI); contains Interpro domain(s) IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit "; GO:0009317,GO:0016874 NbS00006191g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|83284003|gb|ABC01909.1| (e_value=2e-50) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9SRX2|RL191_ARATH (e_value=1e-45) 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1;; (*TAIR) AT1G02780.1 (e_value=8e-47) | Symbols: emb2386 | Ribosomal protein L19e family protein | chr1:608120-609391 REVERSE LENGTH=214;; (*ITAG) Solyc09g075430.2.1 (e_value=4e-53) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00006191g0005.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.25|1|1|4|0|67 NbS00038316g0007.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0.33|3|0|244; (*GB) gi|350534958|ref|NP_001234424.1| (e_value=7e-138) uncharacterized protein LOC543899 [Solanum lycopersicum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=8e-34) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT4G25640.1 (e_value=2e-95) | Symbols: ATDTX35, FFT, DTX35 | detoxifying efflux carrier 35 | chr4:13076953-13078965 REVERSE LENGTH=488;; (*ITAG) Solyc03g025190.2.1 (e_value=1e-140) genomic_reference:SL2.40ch03 gene_region:7043560-7046813 transcript_region:SL2.40ch03:7043560..7046813+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00038316g0002.1 protein AED:0.41 eAED:0.43 QI:0|0.5|0|1|1|1|3|0|107; (*GB) gi|350534958|ref|NP_001234424.1| (e_value=2e-43) uncharacterized protein LOC543899 [Solanum lycopersicum];; (*TAIR) AT4G00350.1 (e_value=2e-36) | Symbols: | MATE efflux family protein | chr4:151978-153988 FORWARD LENGTH=542;; (*ITAG) Solyc03g025190.2.1 (e_value=5e-46) genomic_reference:SL2.40ch03 gene_region:7043560-7046813 transcript_region:SL2.40ch03:7043560..7046813+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00038324g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|3|0|572; (*GB) gi|225439819|ref|XP_002277271.1| (e_value=7e-175) PREDICTED: ABC transporter G family member 2 [Vitis vinifera];; (*SWP) sp|Q9ZUT0|AB2G_ARATH (e_value=2e-159) ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1;; (*TAIR) AT2G37360.1 (e_value=1e-160) | Symbols: | ABC-2 type transporter family protein | chr2:15673555-15675822 REVERSE LENGTH=755;; (*ITAG) Solyc09g005970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:665866-668082 transcript_region:SL2.40ch09:665866..668082+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 2 (AHRD V1 ***- AB2G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00038324g0007.1 protein AED:0.33 eAED:0.33 QI:123|1|0.75|1|1|1|4|0|225; (*GB) gi|297741515|emb|CBI32647.3| (e_value=9e-86) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G53490.1 (e_value=1e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19832666-19834024 FORWARD LENGTH=225;; (*ITAG) Solyc10g084500.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63331214-63333028 transcript_region:SL2.40ch10:63331214..63333028- functional_description:"Unknown Protein (AHRD V1)"; NbS00011535g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|276|982; (*GB) gi|255537884|ref|XP_002510007.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=0.0) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G09970.1 (e_value=0.0) | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like protein kinase family protein | chr1:3252408-3255428 FORWARD LENGTH=976;; (*ITAG) Solyc04g076990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59540573-59542894 transcript_region:SL2.40ch04:59540573..59542894+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00039243g0006.1 protein AED:0.34 eAED:0.40 QI:0|0|0|0.25|0.57|0.5|8|0|463; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00001592g0014.1 protein AED:0.06 eAED:0.06 QI:295|0.92|0.85|1|0.92|0.85|14|789|760; (*GB) gi|350536529|ref|NP_001234763.1| (e_value=0.0) alkaline alpha-galactosidase seed imbibition protein [Solanum lycopersicum];; (*SWP) sp|Q84VX0|RFS1_ARATH (e_value=0.0) Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1;; (*TAIR) AT1G55740.1 (e_value=0.0) | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835507-20838707 REVERSE LENGTH=754;; (*ITAG) Solyc07g065980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64766853-64771778 transcript_region:SL2.40ch07:64766853..64771778+ go_terms:GO:0004553 functional_description:"Alkaline alpha galactosidase I (AHRD V1 **-- Q3Y5A3_CUCSA); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0004553 NbS00001592g0001.1 protein AED:0.17 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|209; (*ITAG) Solyc07g065990.1.1 (e_value=2e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64771924-64772565 transcript_region:SL2.40ch07:64771924..64772565+ go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00001592g0015.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|397|175; (*GB) gi|356552398|ref|XP_003544555.1| (e_value=9e-31) PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=3e-17) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT3G13310.1 (e_value=6e-27) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4310827-4311300 REVERSE LENGTH=157;; (*ITAG) Solyc07g065970.1.1 (e_value=2e-65) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:64762245-64762739 transcript_region:SL2.40ch07:64762245..64762739- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SS19_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00009800g0012.1 protein AED:0.08 eAED:0.08 QI:292|1|0.88|1|0.62|0.77|9|212|662; (*GB) gi|225459683|ref|XP_002285887.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT10 [Vitis vinifera];; (*SWP) sp|Q94KE1|PMTA_ARATH (e_value=0.0) Probable methyltransferase PMT10 OS=Arabidopsis thaliana GN=At1g77260 PE=2 SV=1;; (*TAIR) AT1G77260.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29023961-29026699 REVERSE LENGTH=655;; (*ITAG) Solyc04g058180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54409406-54414910 transcript_region:SL2.40ch04:54409406..54414910- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00009800g0014.1 protein AED:0.35 eAED:0.35 QI:0|0.8|0.5|1|0.6|0.83|6|0|192; (*GB) gi|255558526|ref|XP_002520288.1| (e_value=1e-75) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5M990|TTC33_XENLA (e_value=1e-20) Tetratricopeptide repeat protein 33 OS=Xenopus laevis GN=ttc33 PE=2 SV=1;; (*TAIR) AT1G77230.1 (e_value=5e-60) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29016129-29017873 FORWARD LENGTH=218;; (*ITAG) Solyc04g058200.2.1 (e_value=9e-109) genomic_reference:SL2.40ch04 gene_region:54444395-54449597 transcript_region:SL2.40ch04:54444395..54449597- go_terms:GO:0005488 functional_description:"TPR repeat protein (AHRD V1 *-*- Q6SES8_9BACT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009800g0013.1 protein AED:0.29 eAED:0.29 QI:79|1|0.75|1|0.33|0.5|4|0|271; (*GB) gi|302141752|emb|CBI18955.3| (e_value=8e-31) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g058190.2.1 (e_value=4e-103) genomic_reference:SL2.40ch04 gene_region:54429175-54443676 transcript_region:SL2.40ch04:54429175..54443676+ go_terms:GO:0003677 functional_description:"Lysine-specific demethylase 5D (AHRD V1 *--- KDM5D_CANFA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00003715g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|4|0|451; (*GB) gi|359472818|ref|XP_002274047.2| (e_value=4e-19) PREDICTED: uncharacterized protein LOC100267943 [Vitis vinifera];; (*TAIR) AT2G03630.2 (e_value=3e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:1103205-1103863 FORWARD LENGTH=198;; (*ITAG) Solyc01g010280.2.1 (e_value=2e-92) genomic_reference:SL2.40ch01 gene_region:5078701-5080261 transcript_region:SL2.40ch01:5078701..5080261- functional_description:"Unknown Protein (AHRD V1)"; NbS00002696g0006.1 protein AED:0.24 eAED:0.26 QI:0|0.55|0.6|1|0.55|0.7|10|277|442; (*GB) gi|356574920|ref|XP_003555591.1| (e_value=4e-172) PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2-like [Glycine max];; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=2e-158) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT3G05140.1 (e_value=1e-159) | Symbols: RBK2 | ROP binding protein kinases 2 | chr3:1435817-1437800 REVERSE LENGTH=460;; (*ITAG) Solyc01g098440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80719926-80724116 transcript_region:SL2.40ch01:80719926..80724116- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005723g0011.1 protein AED:0.16 eAED:0.16 QI:60|0.5|0.33|1|1|1|3|34|322; (*GB) gi|297745177|emb|CBI39169.3| (e_value=2e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G54380.1 (e_value=1e-33) | Symbols: | spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515;; (*ITAG) Solyc09g098560.2.1 (e_value=2e-142) genomic_reference:SL2.40ch09 gene_region:67626581-67634305 transcript_region:SL2.40ch09:67626581..67634305+ go_terms:GO:0000398 functional_description:"Survival motor neuron containing protein (AHRD V1 ***- B6TZU2_MAIZE); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398 NbS00005723g0012.1 protein AED:0.30 eAED:0.30 QI:14|0.85|0.5|1|0.85|0.75|8|0|398; (*GB) gi|255579414|ref|XP_002530551.1| (e_value=0.0) Serine/threonine-protein kinase PBS1, putative [Ricinus communis];; (*SWP) sp|B9DFG5|PTI13_ARATH (e_value=0.0) PTI1-like tyrosine-protein kinase 3 OS=Arabidopsis thaliana GN=PTI13 PE=1 SV=1;; (*TAIR) AT3G59350.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:21932930-21934883 FORWARD LENGTH=408;; (*ITAG) Solyc12g098820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64535368-64540452 transcript_region:SL2.40ch12:64535368..64540452+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00061529g0002.1 protein AED:0.00 eAED:0.00 QI:167|1|1|1|0|0.5|2|271|229; (*GB) gi|297734258|emb|CBI15505.3| (e_value=2e-100) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G18215.1 (e_value=2e-94) | Symbols: | Protein of unknown function, DUF599 | chr3:6240968-6242358 FORWARD LENGTH=244;; (*ITAG) Solyc12g040460.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:39416807-39418997 transcript_region:SL2.40ch12:39416807..39418997- functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00024762g0004.1 protein AED:0.01 eAED:0.01 QI:200|1|1|1|1|1|2|613|171; (*GB) gi|356576079|ref|XP_003556162.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100776918 [Glycine max];; (*TAIR) AT1G34000.1 (e_value=9e-52) | Symbols: OHP2 | one-helix protein 2 | chr1:12358151-12358902 REVERSE LENGTH=172;; (*ITAG) Solyc04g071930.2.1 (e_value=3e-69) genomic_reference:SL2.40ch04 gene_region:56538553-56540723 transcript_region:SL2.40ch04:56538553..56540723- functional_description:"One helix protein 2 (AHRD V1 **-- B9H7V8_POPTR)"; NbS00047553g0004.1 protein AED:0.17 eAED:0.50 QI:0|0|0|1|1|1|2|0|445; (*GB) gi|147783945|emb|CAN74687.1| (e_value=6e-78) hypothetical protein VITISV_020417 [Vitis vinifera];; (*TAIR) AT3G62630.1 (e_value=3e-65) | Symbols: | Protein of unknown function (DUF1645) | chr3:23163937-23165079 REVERSE LENGTH=380;; (*ITAG) Solyc01g100310.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:82140047-82141429 transcript_region:SL2.40ch01:82140047..82141429+ functional_description:"Calmodulin-binding protein (AHRD V1 *-*- D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00004026g0003.1 protein AED:0.83 eAED:0.89 QI:0|0|0|0.2|1|1|5|0|108 NbS00027880g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.4|1|1|1|5|0|958; (*GB) gi|225429750|ref|XP_002282410.1| (e_value=0.0) PREDICTED: coatomer subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=0.0) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=0.0) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00047431g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|113205178|gb|ABI34284.1| (e_value=1e-79) hypothetical protein SDM1_23t00005 [Solanum demissum];; (*TAIR) AT1G07910.2 (e_value=6e-24) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072430.1.1 (e_value=2e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52692556-52696179 transcript_region:SL2.40ch11:52692556..52696179- functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 *-*- Q0WZC1_WHEAT)"; NbS00047431g0002.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.16|1|1|6|0|218; (*GB) gi|388604525|gb|AFK76482.1| (e_value=6e-58) tRNA ligase [Solanum melongena];; (*TAIR) AT1G07910.2 (e_value=4e-55) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072420.1.1 (e_value=8e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52667898-52692241 transcript_region:SL2.40ch11:52667898..52692241- go_terms:GO:0004113,GO:0003972,GO:0051731 functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 **-* Q0WZC1_WHEAT)"; GO:0004113,GO:0003972,GO:0051731 NbS00036157g0005.1 protein AED:0.13 eAED:0.14 QI:288|0.9|0.95|1|0.95|0.90|21|600|767; (*GB) gi|82470783|gb|ABB77428.1| (e_value=0.0) cullin 1-like protein C [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc01g067100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67853401-67862419 transcript_region:SL2.40ch01:67853401..67862419- go_terms:GO:0030332 functional_description:"Cullin 1-like protein C (AHRD V1 ***- A0ELU7_PETIN); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00023373g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|0|2|0|178; (*GB) gi|77745483|gb|ABB02640.1| (e_value=3e-111) unknown [Solanum tuberosum];; (*SWP) sp|Q9ZU52|ALFC3_ARATH (e_value=6e-107) Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1;; (*TAIR) AT2G01140.1 (e_value=5e-108) | Symbols: | Aldolase superfamily protein | chr2:95006-96491 REVERSE LENGTH=391;; (*ITAG) Solyc05g008600.2.1 (e_value=5e-114) genomic_reference:SL2.40ch05 gene_region:2916906-2920232 transcript_region:SL2.40ch05:2916906..2920232- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B9SJY9_RICCO); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00054475g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|224087579|ref|XP_002308192.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|O82012|HSP12_SOLPE (e_value=7e-49) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT2G29500.1 (e_value=7e-43) | Symbols: | HSP20-like chaperones superfamily protein | chr2:12633279-12633740 REVERSE LENGTH=153;; (*ITAG) Solyc06g076570.1.1 (e_value=3e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43954001-43954465 transcript_region:SL2.40ch06:43954001..43954465+ functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00011812g0110.1 protein AED:0.10 eAED:0.10 QI:189|1|1|1|0.5|0.33|3|285|264 NbS00011812g0109.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.83|1|1|1|6|143|391 NbS00058166g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.33|1|1|0.66|3|0|307; (*GB) gi|255557204|ref|XP_002519633.1| (e_value=0.0) fructose-bisphosphate aldolase, putative [Ricinus communis];; (*SWP) sp|P46256|ALF1_PEA (e_value=0.0) Fructose-bisphosphate aldolase, cytoplasmic isozyme 1 OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT4G26530.2 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr4:13391566-13392937 FORWARD LENGTH=358;; (*ITAG) Solyc07g065900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64716198-64718891 transcript_region:SL2.40ch07:64716198..64718891+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- A9PEE1_POPTR); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00058166g0005.1 protein AED:0.31 eAED:0.31 QI:237|1|0.93|1|0.86|0.81|16|0|468; (*GB) gi|225463508|ref|XP_002263911.1| (e_value=0.0) PREDICTED: uridine kinase-like protein 4 [Vitis vinifera];; (*SWP) sp|Q8VYB2|UKL3_ARATH (e_value=0.0) Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1;; (*TAIR) AT1G55810.3 (e_value=0.0) | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861273-20864003 FORWARD LENGTH=466;; (*ITAG) Solyc07g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00017574g0006.1 protein AED:0.01 eAED:0.01 QI:336|1|1|1|1|1|2|330|180; (*GB) gi|255646088|gb|ACU23531.1| (e_value=7e-53) unknown [Glycine max];; (*SWP) sp|P25803|CYSEP_PHAVU (e_value=8e-54) Vignain OS=Phaseolus vulgaris PE=2 SV=2;; (*TAIR) AT3G48340.1 (e_value=5e-54) | Symbols: | Cysteine proteinases superfamily protein | chr3:17897739-17899074 FORWARD LENGTH=361;; (*ITAG) Solyc02g077050.2.1 (e_value=2e-90) genomic_reference:SL2.40ch02 gene_region:36695971-36697471 transcript_region:SL2.40ch02:36695971..36697471+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00017574g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|186; (*ITAG) Solyc00g027140.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12390165-12393585 transcript_region:SL2.40ch00:12390165..12393585- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00016933g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|262; (*GB) gi|147782355|emb|CAN61307.1| (e_value=2e-19) hypothetical protein VITISV_035681 [Vitis vinifera];; (*ITAG) Solyc01g080610.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:72349907-72353281 transcript_region:SL2.40ch01:72349907..72353281- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005508 Protein of unknown function DUF313 "; NbS00043955g0003.1 protein AED:0.15 eAED:0.16 QI:0|0.8|0.66|1|1|1|6|0|264; (*GB) gi|78191406|gb|ABB29924.1| (e_value=9e-89) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P48006|EF1D1_ARATH (e_value=1e-80) Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2;; (*TAIR) AT1G30230.2 (e_value=5e-83) | Symbols: | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 | chr1:10639286-10640601 FORWARD LENGTH=260;; (*ITAG) Solyc07g016150.2.1 (e_value=2e-95) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00032824g0017.1 protein AED:0.11 eAED:0.11 QI:774|1|1|1|1|1|10|289|1045; (*GB) gi|255541700|ref|XP_002511914.1| (e_value=0.0) hypothetical protein RCOM_1616500 [Ricinus communis];; (*TAIR) AT4G01290.2 (e_value=2e-84) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). | chr4:538213-543282 REVERSE LENGTH=990;; (*ITAG) Solyc01g095020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78145830-78159352 transcript_region:SL2.40ch01:78145830..78159352+ functional_description:"cDNA clone J023132J12 full insert sequence (AHRD V1 ***- B7EL27_ORYSJ)"; NbS00032824g0008.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|161; (*GB) gi|225463450|ref|XP_002272654.1| (e_value=1e-18) PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=7e-16) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=5e-17) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g060310.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:62962406-62965103 transcript_region:SL2.40ch01:62962406..62965103+ go_terms:GO:0005515,GO:0003677 functional_description:"MADS-box transcription factor (AHRD V1 *-*- Q9SEE0_PICAB); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003677 NbS00032824g0016.1 protein AED:0.22 eAED:0.24 QI:178|0.83|0.85|1|1|1|7|301|655; (*GB) gi|28804252|dbj|BAC58020.1| (e_value=0.0) angustifolia [Ipomoea nil];; (*SWP) sp|O23702|CTBP_ARATH (e_value=0.0) C-terminal binding protein AN OS=Arabidopsis thaliana GN=AN PE=1 SV=1;; (*TAIR) AT1G01510.1 (e_value=0.0) | Symbols: AN | NAD(P)-binding Rossmann-fold superfamily protein | chr1:187235-189836 FORWARD LENGTH=636;; (*ITAG) Solyc01g095040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78171634-78177463 transcript_region:SL2.40ch01:78171634..78177463- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate/hydroxypyruvate reductase B (AHRD V1 *--- GHRB_SERP5); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00032824g0015.1 protein AED:0.25 eAED:0.25 QI:131|0.66|0.85|1|0.66|0.71|7|490|317; (*GB) gi|359489639|ref|XP_003633954.1| (e_value=2e-83) PREDICTED: transcription factor ASG4-like [Vitis vinifera];; (*SWP) sp|Q6R0H0|ASG4_ARATH (e_value=6e-59) Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1;; (*TAIR) AT5G52660.2 (e_value=2e-64) | Symbols: | Homeodomain-like superfamily protein | chr5:21359423-21362037 REVERSE LENGTH=331;; (*ITAG) Solyc01g095030.2.1 (e_value=3e-170) genomic_reference:SL2.40ch01 gene_region:78162225-78170005 transcript_region:SL2.40ch01:78162225..78170005- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR87_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00057538g0004.1 protein AED:0.34 eAED:0.34 QI:47|1|0|1|1|0.5|2|0|116; (*GB) gi|170792414|emb|CAP08387.1| (e_value=1e-63) Ppx-GppA phosphatase protein (exopolyphosphatase) [Capsicum annuum];; (*TAIR) AT1G09195.2 (e_value=1e-38) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). | chr1:2968137-2971457 REVERSE LENGTH=600;; (*ITAG) Solyc01g100260.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:82089176-82095527 transcript_region:SL2.40ch01:82089176..82095527+ functional_description:"Guanosine-5&apos-triphosphate 3&apos-diphosphate pyrophosphatase (AHRD V1 **-- D8MKR7_9ENTR); contains Interpro domain(s) IPR003695 Ppx/GppA phosphatase "; NbS00029897g0011.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.6|1|0.5|0.2|5|0|206; (*GB) gi|225461038|ref|XP_002281399.1| (e_value=6e-123) PREDICTED: trafficking protein particle complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q5ZI57|TPPC3_CHICK (e_value=7e-62) Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1;; (*TAIR) AT5G54750.1 (e_value=3e-118) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc01g096530.2.1 (e_value=6e-127) genomic_reference:SL2.40ch01 gene_region:79366553-79369764 transcript_region:SL2.40ch01:79366553..79369764+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6U299_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00029897g0007.1 protein AED:0.28 eAED:0.28 QI:171|1|1|1|1|1|7|581|190; (*GB) gi|224075876|ref|XP_002304808.1| (e_value=2e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C1I3|PPIH_RHIO9 (e_value=1e-92) Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp7 PE=3 SV=1;; (*TAIR) AT2G38730.1 (e_value=3e-117) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr2:16192579-16194038 REVERSE LENGTH=199;; (*ITAG) Solyc01g096520.2.1 (e_value=4e-130) genomic_reference:SL2.40ch01 gene_region:79361269-79366355 transcript_region:SL2.40ch01:79361269..79366355+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B9GX77_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00029897g0006.1 protein AED:0.69 eAED:0.79 QI:0|0.5|0|1|1|1|3|0|126; (*GB) gi|359487136|ref|XP_002262850.2| (e_value=8e-51) PREDICTED: uncharacterized protein LOC100248009 [Vitis vinifera];; (*TAIR) AT5G06970.1 (e_value=8e-43) | Symbols: | Protein of unknown function (DUF810) | chr5:2158431-2166004 REVERSE LENGTH=1101;; (*ITAG) Solyc01g096540.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:79369999-79389913 transcript_region:SL2.40ch01:79369999..79389913- functional_description:"AT5g06970/MOJ9_14 (AHRD V1 **-- Q8RX56_ARATH); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00004310g0005.1 protein AED:0.20 eAED:0.22 QI:0|0.5|0.2|0.8|1|1|5|0|289; (*GB) gi|1173257|sp|P46300.1|RS4_SOLTU (e_value=1e-166) RecName: Full=40S ribosomal protein S4;; (*SWP) sp|P46300|RS4_SOLTU (e_value=4e-168) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=5e-163) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc02g070350.2.1 (e_value=1e-170) genomic_reference:SL2.40ch02 gene_region:34687926-34690148 transcript_region:SL2.40ch02:34687926..34690148+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00004310g0016.1 protein AED:0.26 eAED:0.29 QI:0|1|0|1|1|1|2|0|302; (*GB) gi|30697080|ref|NP_200656.2| (e_value=8e-125) glucan endo-1,3-beta-glucosidase 9 [Arabidopsis thaliana];; (*SWP) sp|Q9FGH4|E139_ARATH (e_value=2e-126) Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1;; (*TAIR) AT5G58480.1 (e_value=2e-127) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23641227-23642826 REVERSE LENGTH=476;; (*ITAG) Solyc07g017730.2.1 (e_value=1e-72) genomic_reference:SL2.40ch07 gene_region:7882255-7885616 transcript_region:SL2.40ch07:7882255..7885616+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SWD3_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00004310g0023.1 protein AED:0.38 eAED:0.45 QI:0|0|0|1|0|0.33|3|0|148; (*GB) gi|356569494|ref|XP_003552935.1| (e_value=1e-46) PREDICTED: glucan endo-1,3-beta-glucosidase 9-like [Glycine max];; (*SWP) sp|Q9FGH4|E139_ARATH (e_value=2e-31) Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1;; (*TAIR) AT5G58480.1 (e_value=1e-32) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23641227-23642826 REVERSE LENGTH=476;; (*ITAG) Solyc04g015190.2.1 (e_value=2e-21) genomic_reference:SL2.40ch04 gene_region:5371233-5375212 transcript_region:SL2.40ch04:5371233..5375212- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00004310g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.4|1|1|5|0|256; (*ITAG) Solyc08g044310.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00004310g0018.1 protein AED:0.35 eAED:0.50 QI:0|0|0|1|0|0.33|3|0|124; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-20) hypothetical protein [Nicotiana tabacum]; NbS00004310g0019.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|137 NbS00004310g0021.1 protein AED:0.48 eAED:0.71 QI:0|0|0|0.5|0|0|2|0|68; (*GB) gi|57013883|ref|YP_173357.1| (e_value=3e-15) hypothetical protein NitaMp009 [Nicotiana tabacum]; NbS00059445g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|224131652|ref|XP_002328075.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g074550.2.1 (e_value=4e-45) genomic_reference:SL2.40ch06 gene_region:42521995-42525107 transcript_region:SL2.40ch06:42521995..42525107+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001680g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|113205384|gb|ABI34371.1| (e_value=8e-11) Gag/pol polyprotein, 3'-partial, putative [Solanum demissum]; NbS00059263g0003.1 protein AED:0.10 eAED:0.10 QI:276|0.5|0.66|1|0|0|3|210|284; (*GB) gi|359482322|ref|XP_002277233.2| (e_value=8e-32) PREDICTED: uncharacterized protein LOC100249368 [Vitis vinifera];; (*TAIR) AT2G36400.1 (e_value=7e-18) | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 | chr2:15270300-15272617 REVERSE LENGTH=398;; (*ITAG) Solyc09g009200.1.1 (e_value=7e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2558721-2562818 transcript_region:SL2.40ch09:2558721..2562818- go_terms:GO:0005634 functional_description:"Growth-regulating factor 10 (AHRD V1 *--- B9VHC3_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00019581g0008.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|162; (*GB) gi|255545480|ref|XP_002513800.1| (e_value=2e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G48200.1 (e_value=3e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17797070-17797852 REVERSE LENGTH=118;; (*ITAG) Solyc11g012890.1.1 (e_value=2e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5667348-5673104 transcript_region:SL2.40ch11:5667348..5673104- functional_description:"Unknown Protein (AHRD V1)"; NbS00019581g0012.1 protein AED:0.21 eAED:0.21 QI:169|0.87|0.88|1|0.62|0.66|9|470|371; (*GB) gi|225427324|ref|XP_002282232.1| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q42583|KPRS2_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2;; (*TAIR) AT1G32380.1 (e_value=0.0) | Symbols: PRS2 | phosphoribosyl pyrophosphate (PRPP) synthase 2 | chr1:11682033-11684229 FORWARD LENGTH=400;; (*ITAG) Solyc08g077200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00001136g0003.1 protein AED:0.55 eAED:0.75 QI:0|0|0|0.6|1|0.8|5|0|115; (*GB) gi|356535240|ref|XP_003536156.1| (e_value=2e-21) PREDICTED: protein pelota-like [Glycine max];; (*TAIR) AT4G27650.1 (e_value=3e-21) | Symbols: PEL1 | Eukaryotic release factor 1 (eRF1) family protein | chr4:13803459-13807556 REVERSE LENGTH=378;; (*ITAG) Solyc04g009810.2.1 (e_value=5e-25) genomic_reference:SL2.40ch04 gene_region:3117554-3125731 transcript_region:SL2.40ch04:3117554..3125731- go_terms:GO:0005515 functional_description:"Pelota homolog (AHRD V1 ***- C3KIY5_ANOFI); contains Interpro domain(s) IPR004405 Probable translation factor pelota "; GO:0005515 NbS00037908g0006.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.6|0.25|0.2|5|0|282; (*ITAG) Solyc01g059760.1.1 (e_value=7e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00016550g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|359491995|ref|XP_003634351.1| (e_value=6e-62) PREDICTED: probable NAD(P)H-dependent oxidoreductase 1-like [Vitis vinifera];; (*SWP) sp|P26690|6DCS_SOYBN (e_value=1e-43) NAD(P)H-dependent 6'-deoxychalcone synthase OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G59960.1 (e_value=1e-43) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326;; (*ITAG) Solyc12g042470.1.1 (e_value=4e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43212589-43216070 transcript_region:SL2.40ch12:43212589..43216070+ go_terms:GO:0032866,GO:0032867 functional_description:"Reductase 2 (AHRD V1 **** Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00027286g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.84|1|0.83|0.84|13|35|810; (*GB) gi|147836503|emb|CAN77600.1| (e_value=0.0) hypothetical protein VITISV_008038 [Vitis vinifera];; (*TAIR) AT1G65470.1 (e_value=4e-117) | Symbols: FAS1, NFB2 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=815;; (*ITAG) Solyc11g008670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2849753-2857214 transcript_region:SL2.40ch11:2849753..2857214+ functional_description:"At1g65470/F5I14_33 (Fragment) (AHRD V1 *-*- Q9SXY0_ARATH)"; NbS00041140g0007.1 protein AED:0.25 eAED:0.28 QI:7|0.66|0.42|1|0.83|0.71|7|0|527; (*GB) gi|225457130|ref|XP_002280322.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255354 [Vitis vinifera];; (*TAIR) AT5G62570.2 (e_value=2e-145) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00041140g0002.1 protein AED:0.07 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|193527444|gb|ACF19787.1| (e_value=9e-70) NAC transcription factor [Nicotiana tabacum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=2e-13) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=1e-14) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc03g062670.1.1 (e_value=2e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:29295085-29295933 transcript_region:SL2.40ch03:29295085..29295933+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IDF8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00011924g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0|0.33|3|0|463; (*GB) gi|224139318|ref|XP_002323053.1| (e_value=9e-169) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=2e-13) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT3G51710.1 (e_value=1e-125) | Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr3:19182484-19183996 FORWARD LENGTH=476;; (*ITAG) Solyc09g018490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:15065179-15067581 transcript_region:SL2.40ch09:15065179..15067581+ go_terms:GO:0005529 functional_description:"D-mannose binding lectin family protein expressed (AHRD V1 *--- Q2RAY8_ORYSJ); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00011924g0111.1 protein AED:0.13 eAED:0.13 QI:404|1|0.95|1|1|1|22|416|1403 NbS00011924g0112.1 protein AED:0.26 eAED:0.28 QI:84|0.83|0.71|1|1|1|7|0|592 NbS00022623g0006.1 protein AED:0.16 eAED:0.16 QI:182|0.84|0.88|1|0.72|0.73|26|695|1153; (*GB) gi|359479902|ref|XP_002267361.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260666 [Vitis vinifera];; (*SWP) sp|B2RYN7|SPAST_RAT (e_value=1e-47) Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1;; (*TAIR) AT4G02480.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc06g084530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00054953g0004.1 protein AED:0.12 eAED:0.12 QI:252|0.6|0.83|1|0.6|0.5|6|248|454; (*GB) gi|225434028|ref|XP_002273850.1| (e_value=0.0) PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Vitis vinifera];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=3e-82) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT2G30700.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13082033-13084384 REVERSE LENGTH=480;; (*ITAG) Solyc11g045330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37536502-37544737 transcript_region:SL2.40ch11:37536502..37544737+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00006603g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|388827901|gb|AFK79033.1| (e_value=0.0) glycosyltransferase UGT1 [Bupleurum chinense];; (*SWP) sp|Q9ZVX4|U90A1_ARATH (e_value=3e-160) UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1 PE=2 SV=1;; (*TAIR) AT2G16890.2 (e_value=2e-161) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:7316938-7319022 FORWARD LENGTH=478;; (*ITAG) Solyc02g067690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32395157-32396864 transcript_region:SL2.40ch02:32395157..32396864- go_terms:GO:0080044 functional_description:"Glucosyltransferase-like protein (AHRD V1 **** Q9LEQ4_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00006603g0102.1 protein AED:0.10 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|196 NbS00006603g0106.1 protein AED:0.32 eAED:0.33 QI:0|1|0.33|1|1|1|3|0|160 NbS00006603g0104.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|181 NbS00006603g0103.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|78 NbS00006603g0114.1 protein AED:0.37 eAED:0.48 QI:58|1|0.33|1|0.5|0.33|3|0|95 NbC24081849g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|92 NbS00004414g0010.1 protein AED:0.00 eAED:0.00 QI:149|1|1|1|1|1|2|350|235 NbS00004414g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.2|0.16|0.33|1|1|6|0|206; (*GB) gi|5640113|emb|CAB51545.1| (e_value=6e-67) vacuolar processing enzyme [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|P49043|VPE_CITSI (e_value=9e-63) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=8e-62) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc08g065690.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:51149160-51151397 transcript_region:SL2.40ch08:51149160..51151397+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-1b (AHRD V1 **-- Q852T2_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00023065g0005.1 protein AED:0.03 eAED:0.03 QI:62|1|1|1|1|1|2|164|320; (*GB) gi|225458569|ref|XP_002284585.1| (e_value=1e-142) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9SX78|CXE2_ARATH (e_value=1e-131) Probable carboxylesterase 2 OS=Arabidopsis thaliana GN=CXE2 PE=2 SV=1;; (*TAIR) AT1G47480.1 (e_value=1e-132) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314;; (*ITAG) Solyc04g079190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61337920-61339311 transcript_region:SL2.40ch04:61337920..61339311+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00032037g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|541; (*GB) gi|225445078|ref|XP_002280364.1| (e_value=0.0) PREDICTED: multidrug and toxin extrusion protein 1-like [Vitis vinifera];; (*SWP) sp|A1L1P9|S47A1_DANRE (e_value=5e-70) Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1;; (*TAIR) AT4G29140.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr4:14369148-14370746 FORWARD LENGTH=532;; (*ITAG) Solyc04g076950.2.1 (e_value=7e-180) genomic_reference:SL2.40ch04 gene_region:59485478-59487628 transcript_region:SL2.40ch04:59485478..59487628- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00024665g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|225426596|ref|XP_002280209.1| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100242761 [Vitis vinifera];; (*TAIR) AT4G24130.1 (e_value=1e-60) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc08g083090.1.1 (e_value=2e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62825827-62826291 transcript_region:SL2.40ch08:62825827..62826291+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00014746g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.42|1|0.5|0.57|7|0|1737; (*GB) gi|225461549|ref|XP_002282706.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243511 [Vitis vinifera];; (*SWP) sp|P40340|TBP7_YEAST (e_value=3e-90) Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YTA7 PE=1 SV=2;; (*TAIR) AT3G15120.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5088487-5095482 REVERSE LENGTH=1954;; (*ITAG) Solyc07g062760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62673364-62677821 transcript_region:SL2.40ch07:62673364..62677821+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 4 homolog (AHRD V1 *--- PRS4_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00014746g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|162; (*GB) gi|225461543|ref|XP_002282682.1| (e_value=1e-45) PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Vitis vinifera];; (*SWP) sp|Q9FN29|ATB52_ARATH (e_value=2e-28) Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1;; (*TAIR) AT5G53980.1 (e_value=2e-29) | Symbols: ATHB52, HB52 | homeobox protein 52 | chr5:21914087-21914557 FORWARD LENGTH=156;; (*ITAG) Solyc07g062790.1.1 (e_value=5e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62685896-62686420 transcript_region:SL2.40ch07:62685896..62686420- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- Q9XH73_PRUAR); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00014746g0010.1 protein AED:0.23 eAED:0.23 QI:123|1|1|1|0.85|0.75|8|292|242; (*GB) gi|359493638|ref|XP_002282690.2| (e_value=3e-105) PREDICTED: E3 SUMO-protein ligase MMS21-like [Vitis vinifera];; (*SWP) sp|Q8GYH7|NSE2_ARATH (e_value=3e-83) E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1 SV=1;; (*TAIR) AT3G15150.1 (e_value=2e-84) | Symbols: HPY2, MMS21, ATMMS21 | RING/U-box superfamily protein | chr3:5102210-5104082 REVERSE LENGTH=249;; (*ITAG) Solyc07g062780.2.1 (e_value=7e-143) genomic_reference:SL2.40ch07 gene_region:62681796-62685236 transcript_region:SL2.40ch07:62681796..62685236- go_terms:GO:0019789 functional_description:"E3 SUMO-protein ligase NSE2 (AHRD V1 **** C3KJP6_ANOFI); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0019789 NbS00057546g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|291; (*GB) gi|359489978|ref|XP_002270380.2| (e_value=8e-145) PREDICTED: uncharacterized protein At1g28695 [Vitis vinifera];; (*SWP) sp|Q3E6Y3|Y1869_ARATH (e_value=1e-107) Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1;; (*TAIR) AT1G28710.3 (e_value=2e-114) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:10086850-10088025 REVERSE LENGTH=340;; (*ITAG) Solyc03g094120.2.1 (e_value=1e-177) genomic_reference:SL2.40ch03 gene_region:49320521-49322475 transcript_region:SL2.40ch03:49320521..49322475- functional_description:"Os03g0849800 protein (Fragment) (AHRD V1 *--- Q0DLS4_ORYSJ)"; NbS00015706g0002.1 protein AED:0.34 eAED:0.51 QI:0|0|0|0.4|1|1|5|0|312; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-26) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc03g034340.1.1 (e_value=3e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00000343g0012.1 protein AED:0.18 eAED:0.18 QI:91|0.85|0.8|1|0.85|0.73|15|189|640; (*GB) gi|359489351|ref|XP_002269115.2| (e_value=8e-136) PREDICTED: uncharacterized protein LOC100254125 [Vitis vinifera];; (*TAIR) AT2G46915.1 (e_value=2e-129) | Symbols: | Protein of unknown function (DUF3754) | chr2:19274018-19277707 REVERSE LENGTH=708;; (*ITAG) Solyc10g007530.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1851352-1852833 transcript_region:SL2.40ch10:1851352..1852833+ functional_description:"Genomic DNA chromosome 3 P1 clone MLD14 (AHRD V1 ***- Q9LT83_ARATH)"; NbS00000343g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|632; (*GB) gi|255563298|ref|XP_002522652.1| (e_value=1e-43) dnajc14 protein, putative [Ricinus communis];; (*TAIR) AT5G64360.4 (e_value=1e-43) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=464;; (*ITAG) Solyc11g006170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:918328-920277 transcript_region:SL2.40ch11:918328..920277- go_terms:GO:0016021,GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0016021,GO:0031072 NbS00000343g0013.1 protein AED:0.74 eAED:0.88 QI:0|0|0|0.66|0.4|0.66|6|0|205; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=6e-19) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*TAIR) AT5G65960.1 (e_value=3e-18) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=2e-28) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00047479g0015.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|1|1|6|126|558; (*GB) gi|118486577|gb|ABK95127.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT5G32470.1 (e_value=0.0) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc09g064510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57382052-57386217 transcript_region:SL2.40ch09:57382052..57386217+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- Q117V2_TRIEI); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00047479g0016.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|2|0|604; (*GB) gi|255590183|ref|XP_002535195.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9M0G7|PXL2_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1;; (*TAIR) AT4G28650.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr4:14144155-14147276 REVERSE LENGTH=1013;; (*ITAG) Solyc09g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57401662-57405016 transcript_region:SL2.40ch09:57401662..57405016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00047479g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|255590183|ref|XP_002535195.1| (e_value=2e-178) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FRS6|PXL1_ARATH (e_value=2e-142) Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1;; (*TAIR) AT1G08590.1 (e_value=2e-143) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:2718859-2721948 FORWARD LENGTH=1029;; (*ITAG) Solyc09g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57401662-57405016 transcript_region:SL2.40ch09:57401662..57405016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00047479g0021.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.6|1|0.5|0.6|5|420|282; (*GB) gi|365818533|gb|AEX00355.1| (e_value=2e-75) IAA12 [Solanum lycopersicum];; (*SWP) sp|Q38831|IAA13_ARATH (e_value=6e-42) Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2;; (*TAIR) AT2G33310.2 (e_value=4e-43) | Symbols: IAA13 | auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=247;; (*ITAG) Solyc09g064530.2.1 (e_value=4e-78) genomic_reference:SL2.40ch09 gene_region:57405511-57410723 transcript_region:SL2.40ch09:57405511..57410723- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00001217g0008.1 protein AED:0.23 eAED:0.23 QI:46|0.83|0.71|1|0.66|0.85|7|0|495; (*GB) gi|225449917|ref|XP_002268974.1| (e_value=8e-152) PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Vitis vinifera];; (*SWP) sp|Q9FPS3|UBP24_ARATH (e_value=2e-136) Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1;; (*TAIR) AT4G30890.3 (e_value=1e-137) | Symbols: UBP24 | ubiquitin-specific protease 24 | chr4:15036383-15038825 REVERSE LENGTH=551;; (*ITAG) Solyc11g065210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47642992-47649719 transcript_region:SL2.40ch11:47642992..47649719+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9DGE6_ARATH); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00001217g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.5|0.83|1|1|6|0|176; (*GB) gi|255544950|ref|XP_002513536.1| (e_value=6e-108) ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis];; (*SWP) sp|Q9LJZ5|UBC19_ARATH (e_value=2e-98) Ubiquitin-conjugating enzyme E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1;; (*TAIR) AT3G20060.1 (e_value=2e-99) | Symbols: UBC19 | ubiquitin-conjugating enzyme19 | chr3:7002927-7004283 REVERSE LENGTH=181;; (*ITAG) Solyc11g065190.1.1 (e_value=2e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47601564-47603523 transcript_region:SL2.40ch11:47601564..47603523- go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 ***- C1IJE7_9CNID); contains Interpro domain(s) IPR015582 Ubiquitin-conjugating enzyme E2 H10 "; GO:0016567,GO:0043687 NbS00060293g0007.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|3|0|653; (*GB) gi|3183991|emb|CAA06414.1| (e_value=7e-178) P69F protein [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=3e-85) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=1e-88) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc08g079860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60460267-60462504 transcript_region:SL2.40ch08:60460267..60462504+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00060293g0005.1 protein AED:0.51 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|4200340|emb|CAA76727.1| (e_value=4e-31) P69D protein [Solanum lycopersicum];; (*ITAG) Solyc08g079850.1.1 (e_value=8e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60454659-60456902 transcript_region:SL2.40ch08:60454659..60456902- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0004252 NbS00060293g0008.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|682; (*GB) gi|3183991|emb|CAA06414.1| (e_value=0.0) P69F protein [Solanum lycopersicum];; (*SWP) sp|O64495|SDD1_ARATH (e_value=8e-167) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=6e-168) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g079850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60454659-60456902 transcript_region:SL2.40ch08:60454659..60456902- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related IPR000209 Peptidase S8 and S53, subtilisin, kexin, sedolisin "; GO:0004252 NbS00035402g0004.1 protein AED:0.23 eAED:0.23 QI:455|1|1|1|0.6|0.33|6|233|259; (*GB) gi|225454751|ref|XP_002273780.1| (e_value=2e-117) PREDICTED: N-alpha-acetyltransferase 60-like [Vitis vinifera];; (*SWP) sp|A8E5V7|NAA60_XENTR (e_value=2e-18) N-alpha-acetyltransferase 60 OS=Xenopus tropicalis GN=naa60 PE=2 SV=1;; (*TAIR) AT5G16800.2 (e_value=1e-98) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:5524509-5526295 REVERSE LENGTH=270;; (*ITAG) Solyc03g097140.2.1 (e_value=2e-142) genomic_reference:SL2.40ch03 gene_region:52917017-52920378 transcript_region:SL2.40ch03:52917017..52920378+ go_terms:GO:0008152 functional_description:"N-acetyltransferase 15 (AHRD V1 ***- D3PJE2_9MAXI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00035402g0005.1 protein AED:0.29 eAED:0.63 QI:0|0|0|1|0|0|2|0|75; (*ITAG) Solyc12g056710.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48159524-48160596 transcript_region:SL2.40ch12:48159524..48160596- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00045327g0003.1 protein AED:0.06 eAED:0.06 QI:554|1|1|1|1|1|7|192|581; (*GB) gi|16215475|emb|CAC83000.1| (e_value=0.0) calcium-dependent protein kinase 2 [Nicotiana benthamiana];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=0.0) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=0.0) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc04g009800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3108503-3114299 transcript_region:SL2.40ch04:3108503..3114299- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q93YF4_TOBAC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00043744g0006.1 protein AED:0.53 eAED:0.53 QI:100|0.5|0.66|0.66|0.5|0.66|3|0|114; (*GB) gi|356538958|ref|XP_003537967.1| (e_value=6e-18) PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Glycine max];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=4e-14) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT4G00710.1 (e_value=4e-18) | Symbols: BSK3 | BR-signaling kinase 3 | chr4:290807-293096 FORWARD LENGTH=489;; (*ITAG) Solyc09g011750.2.1 (e_value=3e-21) genomic_reference:SL2.40ch09 gene_region:5045721-5050019 transcript_region:SL2.40ch09:5045721..5050019+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00018988g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.5|0.75|0.42|0.62|8|0|283; (*GB) gi|225423767|ref|XP_002277238.1| (e_value=1e-140) PREDICTED: uncharacterized protein LOC100252512 [Vitis vinifera];; (*SWP) sp|P28737|MSP1_YEAST (e_value=4e-39) Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2;; (*TAIR) AT1G50140.2 (e_value=1e-132) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:18569921-18578663 REVERSE LENGTH=981;; (*ITAG) Solyc02g014350.2.1 (e_value=6e-158) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00018988g0009.1 protein AED:0.37 eAED:0.41 QI:0|0.8|0.5|0.83|1|1|6|0|225; (*GB) gi|297605428|ref|NP_001057200.2| (e_value=9e-102) Os06g0225900 [Oryza sativa Japonica Group];; (*SWP) sp|Q7ZZ25|ATD1A_DANRE (e_value=7e-33) ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2;; (*TAIR) AT1G50140.2 (e_value=9e-98) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:18569921-18578663 REVERSE LENGTH=981;; (*ITAG) Solyc02g014350.2.1 (e_value=3e-108) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00018988g0011.1 protein AED:0.80 eAED:0.80 QI:0|0.16|0|0.28|1|1|7|0|246; (*GB) gi|225423767|ref|XP_002277238.1| (e_value=2e-67) PREDICTED: uncharacterized protein LOC100252512 [Vitis vinifera];; (*TAIR) AT3G19740.1 (e_value=2e-60) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993;; (*ITAG) Solyc02g014350.2.1 (e_value=2e-106) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00029621g0001.1 protein AED:0.18 eAED:0.18 QI:134|0.83|0.8|0.96|0.83|0.8|25|1164|697; (*GB) gi|224063307|ref|XP_002301088.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8C0D4|RHG12_MOUSE (e_value=2e-14) Rho GTPase-activating protein 12 OS=Mus musculus GN=Arhgap12 PE=1 SV=2;; (*TAIR) AT4G24580.1 (e_value=0.0) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00007679g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|4|0|305; (*GB) gi|255550217|ref|XP_002516159.1| (e_value=5e-167) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q86UW6|N4BP2_HUMAN (e_value=9e-14) NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2;; (*TAIR) AT2G26280.1 (e_value=1e-145) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbS00007679g0003.1 protein AED:0.45 eAED:1.00 QI:89|0|0|1|1|0.5|2|0|45 NbS00022096g0003.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.66|1|0.8|1|6|0|336; (*GB) gi|255562306|ref|XP_002522160.1| (e_value=3e-141) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G56750.1 (e_value=2e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018326-21020192 REVERSE LENGTH=403;; (*ITAG) Solyc10g078400.1.1 (e_value=4e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59552414-59557141 transcript_region:SL2.40ch10:59552414..59557141+ functional_description:"Os03g0366700 protein (Fragment) (AHRD V1 *-*- Q0DRP4_ORYSJ)"; NbS00020163g0005.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.33|0.5|0.66|3|0|120 NbS00020163g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|0|0|2|0|410; (*GB) gi|329025152|gb|AEB71559.1| (e_value=0.0) CBL-interacting protein kinase [Solanum chacoense];; (*SWP) sp|Q9LZW4|CIPKE_ARATH (e_value=2e-163) CBL-interacting serine/threonine-protein kinase 14 OS=Arabidopsis thaliana GN=CIPK14 PE=1 SV=1;; (*TAIR) AT5G01820.1 (e_value=1e-164) | Symbols: ATSR1, SnRK3.15, CIPK14, ATCIPK14, SR1 | serine/threonine protein kinase 1 | chr5:313423-314751 REVERSE LENGTH=442;; (*ITAG) Solyc09g018280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:14009433-14010764 transcript_region:SL2.40ch09:14009433..14010764+ go_terms:GO:0004683 functional_description:"Calcium/calmodulin-dependent protein kinase type 1 (AHRD V1 *-** KCC1A_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00040679g0001.1 protein AED:0.03 eAED:0.03 QI:460|1|0.66|1|0.5|0.33|3|174|595; (*GB) gi|359480504|ref|XP_002262746.2| (e_value=4e-116) PREDICTED: uncharacterized protein LOC100249503 [Vitis vinifera];; (*SWP) sp|F4I8B9|Y1501_ARATH (e_value=4e-19) Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1;; (*TAIR) AT4G40020.1 (e_value=6e-50) | Symbols: | Myosin heavy chain-related protein | chr4:18553453-18555300 REVERSE LENGTH=615;; (*ITAG) Solyc11g010210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3280166-3281911 transcript_region:SL2.40ch11:3280166..3281911- functional_description:"SKIP interacting protein 3 (Fragment) (AHRD V1 *-*- B8Q889_ORYSI)"; NbS00033707g0003.1 protein AED:0.36 eAED:0.37 QI:89|0.25|0.2|1|1|1|5|0|376; (*GB) gi|358349085|ref|XP_003638570.1| (e_value=2e-123) Chaperone protein dnaJ [Medicago truncatula];; (*SWP) sp|P59910|DJB13_HUMAN (e_value=2e-50) DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1;; (*TAIR) AT4G28480.2 (e_value=8e-117) | Symbols: | DNAJ heat shock family protein | chr4:14073310-14075091 FORWARD LENGTH=290;; (*ITAG) Solyc09g005350.2.1 (e_value=6e-146) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00038361g0001.1 protein AED:0.23 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|65; (*GB) gi|350535449|ref|NP_001233939.1| (e_value=5e-21) 60S ribosomal protein L38 [Solanum lycopersicum];; (*SWP) sp|P46291|RL38_SOLLC (e_value=2e-22) 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1;; (*TAIR) AT3G59540.1 (e_value=2e-19) | Symbols: | Ribosomal L38e protein family | chr3:21995897-21996742 REVERSE LENGTH=69;; (*ITAG) Solyc03g058990.1.1 (e_value=9e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:24638649-24638894 transcript_region:SL2.40ch03:24638649..24638894+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L38 (AHRD V1 ***- D7LK18_ARALY); contains Interpro domain(s) IPR002675 Ribosomal protein L38e "; GO:0003735 NbS00005213g0016.1 protein AED:0.34 eAED:0.34 QI:657|0.83|0.71|1|0.33|0|7|0|237; (*GB) gi|225457032|ref|XP_002282743.1| (e_value=6e-22) PREDICTED: peroxisomal membrane protein PEX14 [Vitis vinifera];; (*ITAG) Solyc06g071470.2.1 (e_value=1e-68) genomic_reference:SL2.40ch06 gene_region:40360357-40367087 transcript_region:SL2.40ch06:40360357..40367087+ go_terms:GO:0008565,GO:0005515 functional_description:"Peroxisomal membrane protein PEX14 (AHRD V1 *-*- PEX14_CRILO); contains Interpro domain(s) IPR006785 Peroxisome membrane anchor protein Pex14p, N-terminal "; GO:0008565,GO:0005515 NbS00005213g0002.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|1|1|4|0|104; (*GB) gi|225457023|ref|XP_002282635.1| (e_value=5e-57) PREDICTED: putative exosome complex component rrp40 [Vitis vinifera];; (*SWP) sp|O13903|RRP40_SCHPO (e_value=6e-20) Exosome complex component rrp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp40 PE=2 SV=1;; (*TAIR) AT2G25355.1 (e_value=5e-50) | Symbols: | PNAS-3 related | chr2:10801391-10803591 FORWARD LENGTH=241;; (*ITAG) Solyc06g071460.2.1 (e_value=5e-67) genomic_reference:SL2.40ch06 gene_region:40355335-40359897 transcript_region:SL2.40ch06:40355335..40359897+ go_terms:GO:0005515 functional_description:"Exosome complex exonuclease RRP40 (AHRD V1 ***- B6TDY7_MAIZE)"; GO:0005515 NbS00005213g0017.1 protein AED:0.36 eAED:0.57 QI:17|0|0|0.5|0.14|0.12|8|0|347; (*GB) gi|18394597|ref|NP_564050.1| (e_value=1e-17) transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana];; (*TAIR) AT1G18340.1 (e_value=3e-20) | Symbols: | basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301;; (*ITAG) Solyc06g071450.2.1 (e_value=4e-51) genomic_reference:SL2.40ch06 gene_region:40349161-40354500 transcript_region:SL2.40ch06:40349161..40354500- go_terms:GO:0016251,GO:0008353 functional_description:"RNA polymerase II transcription factor B subunit 4 (AHRD V1 **** B6K6N1_SCHJY); contains Interpro domain(s) IPR004600 Transcription factor Tfb4 "; GO:0016251,GO:0008353 NbS00031186g0007.1 protein AED:0.27 eAED:0.27 QI:45|0.68|0.70|0.94|0.56|0.58|17|248|738; (*GB) gi|255575849|ref|XP_002528822.1| (e_value=0.0) xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis];; (*SWP) sp|Q8S403|PHO1_ARATH (e_value=0.0) Phosphate transporter PHO1 OS=Arabidopsis thaliana GN=PHO1 PE=2 SV=1;; (*TAIR) AT3G23430.1 (e_value=0.0) | Symbols: PHO1, ATPHO1 | phosphate 1 | chr3:8387818-8393242 REVERSE LENGTH=782;; (*ITAG) Solyc09g090360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65211853-65222388 transcript_region:SL2.40ch09:65211853..65222388- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00031186g0010.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0.33|3|0|195; (*GB) gi|225433197|ref|XP_002285334.1| (e_value=7e-84) PREDICTED: long-chain-alcohol oxidase FAO1 [Vitis vinifera];; (*SWP) sp|B5WWZ8|FAO1_LOTJA (e_value=7e-78) Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1;; (*TAIR) AT1G03990.1 (e_value=1e-72) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr1:1024847-1027616 FORWARD LENGTH=758;; (*ITAG) Solyc09g090350.2.1 (e_value=2e-112) genomic_reference:SL2.40ch09 gene_region:65206809-65211763 transcript_region:SL2.40ch09:65206809..65211763+ go_terms:GO:0009055,GO:0046577 functional_description:"Oxidoreductase (AHRD V1 ***- B6SXM3_MAIZE); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00031186g0011.1 protein AED:0.34 eAED:0.75 QI:0|0|0|1|0.5|0.66|3|0|173; (*GB) gi|147770729|emb|CAN71289.1| (e_value=3e-44) hypothetical protein VITISV_019349 [Vitis vinifera];; (*SWP) sp|B5WWZ8|FAO1_LOTJA (e_value=4e-38) Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1;; (*TAIR) AT3G23410.1 (e_value=3e-38) | Symbols: ATFAO3, FAO3 | fatty alcohol oxidase 3 | chr3:8382860-8386024 FORWARD LENGTH=746;; (*ITAG) Solyc09g090350.2.1 (e_value=2e-62) genomic_reference:SL2.40ch09 gene_region:65206809-65211763 transcript_region:SL2.40ch09:65206809..65211763+ go_terms:GO:0009055,GO:0046577 functional_description:"Oxidoreductase (AHRD V1 ***- B6SXM3_MAIZE); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00031186g0009.1 protein AED:0.42 eAED:0.69 QI:0|0|0|1|0|0|2|0|86 NbS00032143g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|441; (*GB) gi|357528936|gb|AET80688.1| (e_value=0.0) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=1e-169) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=1e-73) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc06g074710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42628659-42629993 transcript_region:SL2.40ch06:42628659..42629993- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-* B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00003872g0010.1 protein AED:0.18 eAED:0.19 QI:13|0.33|0.28|1|0.5|0.42|7|0|1063; (*GB) gi|67515354|gb|AAY68206.1| (e_value=0.0) RNA polymerase IV second largest subunit [Solanum lycopersicum];; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=0.0) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=0.0) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00003872g0205.1 protein AED:0.22 eAED:0.22 QI:108|1|1|1|0.5|0.33|3|0|353 NbS00025754g0004.1 protein AED:0.03 eAED:0.03 QI:186|0.77|0.5|1|0.88|0.8|10|0|339; (*GB) gi|225423792|ref|XP_002277492.1| (e_value=7e-179) PREDICTED: importin-9-like [Vitis vinifera];; (*SWP) sp|Q91YE6|IPO9_MOUSE (e_value=2e-50) Importin-9 OS=Mus musculus GN=Ipo9 PE=1 SV=3;; (*TAIR) AT1G26170.1 (e_value=3e-166) | Symbols: | ARM repeat superfamily protein | chr1:9047539-9054438 REVERSE LENGTH=1022;; (*ITAG) Solyc05g010160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4337028-4352097 transcript_region:SL2.40ch05:4337028..4352097+ go_terms:GO:0006886,GO:0005488,GO:0006355 functional_description:"Importin 9 (AHRD V1 ***- Q4G0B8_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488,GO:0006355 NbS00010115g0007.1 protein AED:0.28 eAED:0.28 QI:136|0.93|0.94|1|0.68|0.58|17|160|452; (*GB) gi|53854350|gb|AAU95618.1| (e_value=0.0) cytosolic acetoacetyl-coenzyme A thiolase [Nicotiana tabacum];; (*SWP) sp|Q8S4Y1|THIC1_ARATH (e_value=0.0) Acetyl-CoA acetyltransferase, cytosolic 1 OS=Arabidopsis thaliana GN=AAT1 PE=2 SV=1;; (*TAIR) AT5G48230.2 (e_value=0.0) | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolase 2 | chr5:19552570-19555122 REVERSE LENGTH=403;; (*ITAG) Solyc07g045350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55772647-55779165 transcript_region:SL2.40ch07:55772647..55779165- go_terms:GO:0003985 functional_description:"Acetyl-CoA C-acetyltransferase protein (AHRD V1 **** D3YN47_9ERIC); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00010115g0008.1 protein AED:0.31 eAED:0.35 QI:198|0.5|0.33|1|0.5|0.33|3|0|80; (*GB) gi|255582868|ref|XP_002532206.1| (e_value=2e-25) NOI, putative [Ricinus communis];; (*TAIR) AT2G04410.1 (e_value=1e-24) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr2:1534012-1535040 REVERSE LENGTH=73;; (*ITAG) Solyc07g045340.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:55765795-55769600 transcript_region:SL2.40ch07:55765795..55769600- functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00010115g0112.1 protein AED:0.00 eAED:0.00 QI:267|1|1|1|0|0.33|3|585|143 NbS00010115g0105.1 protein AED:0.45 eAED:0.45 QI:28|1|0.5|1|0|0|2|0|270 NbS00010115g0108.1 protein AED:0.42 eAED:0.50 QI:0|0|0|1|1|1|3|0|65 NbS00010115g0107.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.5|1|1|2|0|84 NbS00010115g0114.1 protein AED:0.25 eAED:0.26 QI:0|0.94|0.94|1|1|1|18|392|713 NbS00010115g0113.1 protein AED:0.42 eAED:0.42 QI:0|0.33|0|0.75|0.33|0.5|4|0|98 NbS00021920g0009.1 protein AED:0.00 eAED:0.00 QI:486|1|1|1|0.33|0.25|4|339|465; (*GB) gi|224107951|ref|XP_002314666.1| (e_value=6e-175) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14750.1 (e_value=5e-81) | Symbols: IQD19 | IQ-domain 19 | chr4:8470449-8471903 FORWARD LENGTH=387;; (*ITAG) Solyc09g082560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63677616-63679791 transcript_region:SL2.40ch09:63677616..63679791- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6SW62_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00021920g0010.1 protein AED:0.30 eAED:0.39 QI:127|1|0.5|1|0|0|2|290|29 NbS00055728g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.83|0.71|1|0.83|0.71|7|0|728; (*GB) gi|255555687|ref|XP_002518879.1| (e_value=0.0) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q9XSC3|WDR44_BOVIN (e_value=1e-51) WD repeat-containing protein 44 OS=Bos taurus GN=WDR44 PE=1 SV=1;; (*TAIR) AT5G24320.1 (e_value=4e-169) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694;; (*ITAG) Solyc08g008490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2876847-2880673 transcript_region:SL2.40ch08:2876847..2880673- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00026203g0010.1 protein AED:0.17 eAED:0.17 QI:223|0.6|0.83|1|0.6|0.83|6|350|312; (*GB) gi|255538206|ref|XP_002510168.1| (e_value=1e-108) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G60060.1 (e_value=9e-51) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr1:22139282-22141585 FORWARD LENGTH=386;; (*ITAG) Solyc04g078520.2.1 (e_value=5e-151) genomic_reference:SL2.40ch04 gene_region:60830112-60832261 transcript_region:SL2.40ch04:60830112..60832261+ functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *-*- Y1615_ARATH)"; NbS00026203g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|160; (*GB) gi|356496931|ref|XP_003517318.1| (e_value=2e-77) PREDICTED: protein RER1A-like [Glycine max];; (*SWP) sp|O48670|RER1A_ARATH (e_value=4e-65) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=3e-66) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc04g078510.2.1 (e_value=6e-94) genomic_reference:SL2.40ch04 gene_region:60824846-60828559 transcript_region:SL2.40ch04:60824846..60828559+ go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00017662g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|224125906|ref|XP_002329746.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=2e-28) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT1G14440.2 (e_value=6e-32) | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31 | chr1:4939076-4940014 REVERSE LENGTH=312;; (*ITAG) Solyc03g098060.1.1 (e_value=4e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53852914-53853453 transcript_region:SL2.40ch03:53852914..53853453- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 3 (Fragment) (AHRD V1 **-- B0LK11_ESCCA); contains Interpro domain(s) IPR006455 Homeobox domain, ZF-HD class "; GO:0003700 NbS00017662g0011.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|0|140; (*GB) gi|350536977|ref|NP_001234786.1| (e_value=1e-85) calmodulin [Solanum lycopersicum];; (*SWP) sp|P27161|CALM_SOLLC (e_value=4e-87) Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=5e-84) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc03g098050.2.1 (e_value=2e-88) genomic_reference:SL2.40ch03 gene_region:53844509-53847335 transcript_region:SL2.40ch03:53844509..53847335+ go_terms:GO:0005516,GO:0005509 functional_description:"Calmodulin 3 protein (AHRD V1 **** Q712P2_CAPAN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005516,GO:0005509 NbS00011486g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.42|1|0.83|0.85|7|307|688; (*GB) gi|21358787|gb|AAM47025.1| (e_value=0.0) nam-like protein 1 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=8e-47) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G49530.1 (e_value=9e-83) | Symbols: ANAC062, NTL6, NAC062 | NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469;; (*ITAG) Solyc06g073050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00011486g0006.1 protein AED:0.28 eAED:0.28 QI:250|1|1|1|1|1|5|185|432; (*GB) gi|255560590|ref|XP_002521309.1| (e_value=0.0) IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis];; (*SWP) sp|O81641|ILL3_ARATH (e_value=0.0) IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsis thaliana GN=ILL3 PE=2 SV=1;; (*TAIR) AT5G54140.1 (e_value=0.0) | Symbols: ILL3 | IAA-leucine-resistant (ILR1)-like 3 | chr5:21965833-21967834 FORWARD LENGTH=428;; (*ITAG) Solyc06g073060.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41401609-41405851 transcript_region:SL2.40ch06:41401609..41405851+ go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 6 (AHRD V1 **** A9PG36_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00038440g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|0.66|1|1|3|0|69; (*GB) gi|357488567|ref|XP_003614571.1| (e_value=5e-37) Prefoldin subunit [Medicago truncatula];; (*SWP) sp|Q9VW56|PFD6_DROME (e_value=3e-16) Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1;; (*TAIR) AT1G29990.1 (e_value=4e-38) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=1e-40) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631,GO:0051087 NbS00038440g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|98|481; (*GB) gi|359486369|ref|XP_002273875.2| (e_value=0.0) PREDICTED: laccase-12-like [Vitis vinifera];; (*SWP) sp|Q9FLB5|LAC12_ARATH (e_value=0.0) Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1;; (*TAIR) AT5G05390.1 (e_value=0.0) | Symbols: LAC12 | laccase 12 | chr5:1594753-1597042 FORWARD LENGTH=565;; (*ITAG) Solyc05g052340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61741956-61744207 transcript_region:SL2.40ch05:61741956..61744207- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9ZP47_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00030448g0001.1 protein AED:0.18 eAED:0.18 QI:936|1|0.88|1|0.5|0.33|9|202|412; (*GB) gi|225425664|ref|XP_002269607.1| (e_value=0.0) PREDICTED: beta-1,3-galactosyltransferase 15 [Vitis vinifera];; (*SWP) sp|Q8L7F9|B3GTF_ARATH (e_value=0.0) Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1;; (*TAIR) AT1G26810.1 (e_value=0.0) | Symbols: GALT1 | galactosyltransferase1 | chr1:9286862-9289327 REVERSE LENGTH=643;; (*ITAG) Solyc05g007930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2352505-2356069 transcript_region:SL2.40ch05:2352505..2356069- go_terms:GO:0010488 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 **** D8SVH6_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0010488 NbS00025090g0008.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|0.71|0.62|8|613|362; (*GB) gi|158147058|gb|ABW22630.1| (e_value=6e-167) bHLH transcription factor Upa20 [Capsicum annuum];; (*SWP) sp|Q93W88|BH137_ARATH (e_value=4e-55) Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1;; (*TAIR) AT5G50915.2 (e_value=3e-56) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:20710764-20712252 REVERSE LENGTH=286;; (*ITAG) Solyc03g097820.1.1 (e_value=2e-148) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53591976-53594125 transcript_region:SL2.40ch03:53591976..53594125- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00025090g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|8|0|290; (*GB) gi|255543599|ref|XP_002512862.1| (e_value=2e-174) vacuolar ATP synthase subunit C, putative [Ricinus communis];; (*SWP) sp|Q9SDS7|VATC_ARATH (e_value=3e-167) V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1;; (*TAIR) AT1G12840.1 (e_value=2e-168) | Symbols: DET3, ATVHA-C | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375;; (*ITAG) Solyc03g097790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53564540-53576586 transcript_region:SL2.40ch03:53564540..53576586+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit C (AHRD V1 **** VATC_ARATH); contains Interpro domain(s) IPR004907 ATPase, V1 complex, subunit C "; GO:0005515,GO:0046961 NbS00025090g0006.1 protein AED:0.29 eAED:0.30 QI:0|1|0.33|1|1|0.66|3|0|81; (*GB) gi|225451579|ref|XP_002275510.1| (e_value=4e-42) PREDICTED: V-type proton ATPase subunit C [Vitis vinifera];; (*SWP) sp|Q9SDS7|VATC_ARATH (e_value=2e-39) V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1;; (*TAIR) AT1G12840.1 (e_value=2e-40) | Symbols: DET3, ATVHA-C | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375;; (*ITAG) Solyc03g097800.2.1 (e_value=1e-54) genomic_reference:SL2.40ch03 gene_region:53574481-53576681 transcript_region:SL2.40ch03:53574481..53576681+ go_terms:GO:0033180 functional_description:"V-type proton ATPase subunit C (AHRD V1 ***- VATC_ARATH); contains Interpro domain(s) IPR004907 ATPase, V1 complex, subunit C "; GO:0033180 NbS00059018g0004.1 protein AED:0.19 eAED:0.22 QI:0|0.71|0.37|1|0.57|0.62|8|0|792; (*GB) gi|1103712|emb|CAA58700.1| (e_value=0.0) inorganic pyrophosphatase [Nicotiana tabacum];; (*SWP) sp|P21616|AVP_VIGRR (e_value=0.0) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.1 (e_value=0.0) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc07g007600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2247006-2251786 transcript_region:SL2.40ch07:2247006..2251786- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00049220g0010.1 protein AED:0.35 eAED:0.35 QI:33|1|1|1|0.25|0.4|5|327|111; (*GB) gi|359474728|ref|XP_003631523.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100854852 [Vitis vinifera];; (*ITAG) Solyc12g096170.1.1 (e_value=6e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63534733-63538542 transcript_region:SL2.40ch12:63534733..63538542- functional_description:"Unknown Protein (AHRD V1)"; NbS00049220g0003.1 protein AED:0.35 eAED:0.35 QI:127|0.88|0.8|1|0.77|0.7|10|5|208; (*GB) gi|242060618|ref|XP_002451598.1| (e_value=8e-134) hypothetical protein SORBIDRAFT_04g004420 [Sorghum bicolor];; (*SWP) sp|Q567B1|OTU1_DANRE (e_value=2e-63) Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1;; (*TAIR) AT1G50670.1 (e_value=7e-131) | Symbols: | OTU-like cysteine protease family protein | chr1:18775086-18776552 REVERSE LENGTH=208;; (*ITAG) Solyc07g064590.2.1 (e_value=4e-133) genomic_reference:SL2.40ch07 gene_region:63891191-63895627 transcript_region:SL2.40ch07:63891191..63895627+ go_terms:GO:0004843 functional_description:"Ubiquitin thioesterase OTU1 (AHRD V1 **** B0XED2_CULQU); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0004843 NbS00061196g0005.1 protein AED:0.13 eAED:0.13 QI:524|0.83|0.85|1|0.83|0.71|7|262|531; (*GB) gi|225448697|ref|XP_002275231.1| (e_value=1e-152) PREDICTED: uncharacterized protein LOC100267305 [Vitis vinifera];; (*TAIR) AT5G05240.1 (e_value=4e-66) | Symbols: | Uncharacterised conserved protein (UCP030365) | chr5:1554023-1556230 REVERSE LENGTH=530;; (*ITAG) Solyc06g048970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28609817-28613929 transcript_region:SL2.40ch06:28609817..28613929- functional_description:"At2g40630/T2P4.2 (AHRD V1 *-*- Q94EI6_ARATH)"; NbS00005525g0007.1 protein AED:0.07 eAED:0.07 QI:665|0.84|0.78|1|0.69|0.57|14|875|1459; (*GB) gi|359476736|ref|XP_002269759.2| (e_value=0.0) PREDICTED: histone-lysine N-methyltransferase SUVR5-like [Vitis vinifera];; (*SWP) sp|O64827|SUVR5_ARATH (e_value=0.0) Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3;; (*TAIR) AT2G23740.2 (e_value=0.0) | Symbols: | nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding | chr2:10098213-10103229 FORWARD LENGTH=1382;; (*ITAG) Solyc02g089970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46223245-46232507 transcript_region:SL2.40ch02:46223245..46232507- go_terms:GO:0005634,GO:0005622 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- B0XIT7_CULQU); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0005622 NbS00005525g0005.1 protein AED:0.31 eAED:0.44 QI:0|0|0|1|1|1|4|439|108 NbS00018430g0003.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|272; (*GB) gi|359482860|ref|XP_003632855.1| (e_value=1e-54) PREDICTED: dof zinc finger protein DOF1.7-like [Vitis vinifera];; (*SWP) sp|O82155|DOF17_ARATH (e_value=2e-33) Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1;; (*TAIR) AT1G51700.1 (e_value=2e-34) | Symbols: ADOF1, DOF1 | DOF zinc finger protein 1 | chr1:19174266-19174850 FORWARD LENGTH=194;; (*ITAG) Solyc03g121400.1.1 (e_value=4e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63559109-63559741 transcript_region:SL2.40ch03:63559109..63559741- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 4 (AHRD V1 *-*- A5HWF3_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00054224g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.6|1|1|1|10|0|654; (*GB) gi|193290650|gb|ACF17633.1| (e_value=0.0) putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Capsicum annuum];; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=0.0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=0.0) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc09g013080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5484876-5491347 transcript_region:SL2.40ch09:5484876..5491347- go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- B7KJL9_CYAP7); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00049841g0003.1 protein AED:0.15 eAED:0.15 QI:302|0.77|0.9|1|0.11|0.3|10|1290|454; (*GB) gi|297739485|emb|CBI29667.3| (e_value=5e-118) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=3e-50) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT5G63700.1 (e_value=3e-80) | Symbols: | zinc ion binding;DNA binding | chr5:25493934-25497632 REVERSE LENGTH=602;; (*ITAG) Solyc01g103250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83659592-83668821 transcript_region:SL2.40ch01:83659592..83668821+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase NSD3 (AHRD V1 *--- NSD3_HUMAN); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00049236g0001.1 protein AED:0.27 eAED:0.29 QI:332|0|0.5|1|0|1|2|0|377; (*GB) gi|224100751|ref|XP_002311998.1| (e_value=3e-173) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39120.1 (e_value=3e-155) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:16321794-16322957 FORWARD LENGTH=387;; (*ITAG) Solyc10g079160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60090902-60092131 transcript_region:SL2.40ch10:60090902..60092131+ go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00049236g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.4|1|0.25|0|5|0|875; (*GB) gi|225441817|ref|XP_002278051.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Vitis vinifera];; (*SWP) sp|O22938|Y2182_ARATH (e_value=0.0) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT2G41820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:17447170-17449914 FORWARD LENGTH=890;; (*ITAG) Solyc10g079170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60094152-60097061 transcript_region:SL2.40ch10:60094152..60097061- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00049236g0008.1 protein AED:0.18 eAED:0.49 QI:76|0|0|1|0|0|3|0|119; (*GB) gi|24285904|gb|AAL14199.1| (e_value=4e-25) cysteine proteinase precursor [Ipomoea batatas];; (*TAIR) AT5G45890.1 (e_value=2e-13) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056020.1.1 (e_value=4e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47348883-47350234 transcript_region:SL2.40ch12:47348883..47350234+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00000433g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|110826035|gb|ABH01084.1| (e_value=2e-13) putative ROX1 [Nicotiana tabacum];; (*ITAG) Solyc02g077710.1.1 (e_value=4e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37172109-37173137 transcript_region:SL2.40ch02:37172109..37173137+ functional_description:"E6-2 protein kinase (AHRD V1 *-*- B6E139_GOSHI)"; NbS00000433g0014.1 protein AED:0.09 eAED:0.09 QI:0|1|0.6|1|1|1|5|0|623; (*GB) gi|359496904|ref|XP_003635366.1| (e_value=2e-127) PREDICTED: uncharacterized protein LOC100266951 [Vitis vinifera];; (*SWP) sp|Q1PEB4|Y4498_ARATH (e_value=3e-105) Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1;; (*TAIR) AT4G04980.1 (e_value=8e-105) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G11070.1); Has 23100 Blast hits to 15699 proteins in 1063 species: Archae - 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants - 3181; Viruses - 958; Other Eukaryotes - 5007 (source: NCBI BLink). | chr4:2544210-2547893 REVERSE LENGTH=880;; (*ITAG) Solyc10g009140.2.1 (e_value=1e-166) genomic_reference:SL2.40ch10 gene_region:3141186-3146147 transcript_region:SL2.40ch10:3141186..3146147- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00000433g0013.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|104; (*GB) gi|296088897|emb|CBI38446.3| (e_value=1e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g009140.2.1 (e_value=1e-40) genomic_reference:SL2.40ch10 gene_region:3141186-3146147 transcript_region:SL2.40ch10:3141186..3146147- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00000433g0001.1 protein AED:0.16 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|178 NbS00000433g0010.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.25|0.33|0.25|4|0|108; (*GB) gi|42539899|gb|AAS18877.1| (e_value=3e-23) SNF1-related protein kinase alpha subunit [Nicotiana attenuata];; (*ITAG) Solyc02g067030.2.1 (e_value=2e-20) genomic_reference:SL2.40ch02 gene_region:31839840-31851609 transcript_region:SL2.40ch02:31839840..31851609- go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase catalytic subunit alpha-2 (AHRD V1 **** D1LWW2_SACKO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00004173g0007.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|609; (*GB) gi|2916727|emb|CAA73103.1| (e_value=0.0) polyphenol oxidase [Nicotiana tabacum];; (*SWP) sp|Q06355|PPOB_SOLTU (e_value=0.0) Catechol oxidase B, chloroplastic (Fragment) OS=Solanum tuberosum PE=2 SV=1;; (*ITAG) Solyc08g074620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:55911248-55913011 transcript_region:SL2.40ch08:55911248..55913011+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00010796g0011.1 protein AED:0.01 eAED:0.01 QI:48|1|1|1|1|1|3|356|396; (*GB) gi|74267246|dbj|BAE44121.1| (e_value=0.0) protein phosphatase 2C [Nicotiana benthamiana];; (*SWP) sp|O80871|P2C25_ARATH (e_value=1e-120) Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1;; (*TAIR) AT2G30020.1 (e_value=1e-121) | Symbols: | Protein phosphatase 2C family protein | chr2:12814437-12815904 FORWARD LENGTH=396;; (*ITAG) Solyc06g007190.2.1 (e_value=8e-166) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00010796g0008.1 protein AED:0.21 eAED:0.21 QI:161|1|0.75|1|1|1|4|0|160; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=4e-92) EBP1 [Solanum tuberosum];; (*SWP) sp|Q1ZXG4|PRLA_DICDI (e_value=6e-38) Proliferation-associated protein A OS=Dictyostelium discoideum GN=prlA PE=2 SV=1;; (*TAIR) AT3G51800.3 (e_value=8e-87) | Symbols: ATG2 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385;; (*ITAG) Solyc06g082090.2.1 (e_value=4e-95) genomic_reference:SL2.40ch06 gene_region:44317047-44320702 transcript_region:SL2.40ch06:44317047..44320702+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00013386g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.33|3|0|299; (*GB) gi|224139188|ref|XP_002326790.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25190.1 (e_value=1e-37) | Symbols: QWRF7 | Family of unknown function (DUF566) | chr4:12914400-12916001 REVERSE LENGTH=394;; (*ITAG) Solyc05g051650.1.1 (e_value=5e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61181368-61184805 transcript_region:SL2.40ch05:61181368..61184805- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *--- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00013386g0005.1 protein AED:0.23 eAED:0.30 QI:0|0|0|1|0|0|7|0|638; (*GB) gi|255539821|ref|XP_002510975.1| (e_value=0.0) Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=2e-168) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=2e-169) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc05g051640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61175509-61181215 transcript_region:SL2.40ch05:61175509..61181215+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00013386g0004.1 protein AED:0.43 eAED:0.72 QI:0|0|0|1|0|0|2|0|137; (*GB) gi|359490050|ref|XP_002268598.2| (e_value=4e-28) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=1e-14) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=8e-16) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc05g051640.2.1 (e_value=8e-42) genomic_reference:SL2.40ch05 gene_region:61175509-61181215 transcript_region:SL2.40ch05:61175509..61181215+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006898g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|113; (*GB) gi|3047057|gb|AAC83146.1| (e_value=4e-58) 1-aminocyclopropane-1-carboxylate synthase [Nicotiana glutinosa];; (*SWP) sp|Q07262|1A1C_TOBAC (e_value=1e-56) 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=3e-40) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc01g095080.2.1 (e_value=4e-52) genomic_reference:SL2.40ch01 gene_region:78214067-78216996 transcript_region:SL2.40ch01:78214067..78216996- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00006898g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|0.66|1|1|3|376|81 NbS00029431g0005.1 protein AED:0.27 eAED:0.29 QI:0|0.33|0|0.75|0.66|0.75|4|0|135; (*GB) gi|116047953|gb|ABJ53202.1| (e_value=2e-82) myosin VIII-B [Nicotiana benthamiana];; (*SWP) sp|Q02440|MYO5A_CHICK (e_value=3e-22) Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1;; (*TAIR) AT3G19960.1 (e_value=2e-51) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc07g063590.2.1 (e_value=8e-73) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00029431g0009.1 protein AED:0.49 eAED:0.47 QI:89|0.5|0|1|1|0.66|3|0|109; (*GB) gi|116047953|gb|ABJ53202.1| (e_value=7e-66) myosin VIII-B [Nicotiana benthamiana];; (*TAIR) AT5G54280.1 (e_value=2e-26) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22044715 REVERSE LENGTH=1030;; (*ITAG) Solyc07g063590.2.1 (e_value=7e-54) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00029431g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|1|1|3|277|265; (*GB) gi|115794|sp|P27489.1|CB23_SOLLC (e_value=4e-177) RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic; AltName: Full=LHCII type III CAB-13; Flags: Precursor;; (*SWP) sp|P27489|CB23_SOLLC (e_value=1e-178) Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1;; (*TAIR) AT5G54270.1 (e_value=2e-168) | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorophyll B-binding protein 3 | chr5:22038424-22039383 FORWARD LENGTH=265;; (*ITAG) Solyc07g063600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63262431-63264147 transcript_region:SL2.40ch07:63262431..63264147- go_terms:GO:0005198 functional_description:"Chlorophyll a-b binding protein 13, chloroplastic (AHRD V1 ***- CB23_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005198 NbS00032547g0001.1 protein AED:0.65 eAED:0.81 QI:0|0|0|0.6|1|1|5|0|106; (*GB) gi|345561937|gb|EGX45009.1| (e_value=7e-20) hypothetical protein AOL_s00173g110 [Arthrobotrys oligospora ATCC 24927];; (*SWP) sp|P0CM16|ARF_CRYNJ (e_value=4e-21) ADP-ribosylation factor OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ARF PE=1 SV=1;; (*TAIR) AT2G47170.1 (e_value=9e-21) | Symbols: ARF1A1C | Ras-related small GTP-binding family protein | chr2:19367264-19368518 FORWARD LENGTH=181;; (*ITAG) Solyc01g100870.2.1 (e_value=4e-21) genomic_reference:SL2.40ch01 gene_region:82530325-82533925 transcript_region:SL2.40ch01:82530325..82533925- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q9M7P4_CAPAN); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00052287g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|0|2|0|238; (*ITAG) Solyc01g005880.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:585801-586844 transcript_region:SL2.40ch01:585801..586844+ functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC)"; NbS00018136g0015.1 protein AED:0.03 eAED:0.03 QI:621|1|1|1|0.75|0.6|5|25|451; (*GB) gi|225459334|ref|XP_002284180.1| (e_value=5e-161) PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera];; (*SWP) sp|Q9SIN1|TTL3_ARATH (e_value=2e-92) Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2;; (*TAIR) AT5G65160.1 (e_value=1e-141) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g073940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57543061-57545105 transcript_region:SL2.40ch04:57543061..57545105- go_terms:GO:0030544,GO:0051082 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MT84_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544,GO:0051082 NbS00018136g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|358008884|gb|AET99101.1| (e_value=6e-82) dehydration-responsive element-binding protein DREB4 [Solanum tuberosum];; (*SWP) sp|Q8H1E4|RAP24_ARATH (e_value=2e-55) Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1;; (*TAIR) AT1G78080.1 (e_value=1e-56) | Symbols: RAP2.4 | related to AP2 4 | chr1:29364790-29365794 FORWARD LENGTH=334;; (*ITAG) Solyc12g056980.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48419085-48420098 transcript_region:SL2.40ch12:48419085..48420098+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018136g0014.1 protein AED:0.27 eAED:0.27 QI:147|1|1|1|1|1|2|140|99 NbS00011356g0009.1 protein AED:0.16 eAED:0.16 QI:30|1|1|1|1|1|2|243|478; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=0.0) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=0.0) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00029480g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.75|4|0|413; (*GB) gi|260177086|gb|ACX33886.1| (e_value=7e-171) flavin monooxygenase-like protein [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8VZ59|YUC6_ARATH (e_value=3e-146) Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1;; (*TAIR) AT5G25620.1 (e_value=2e-147) | Symbols: YUC6 | Flavin-binding monooxygenase family protein | chr5:8935520-8938224 REVERSE LENGTH=417;; (*ITAG) Solyc08g068160.1.1 (e_value=1e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54471769-54474827 transcript_region:SL2.40ch08:54471769..54474827- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00032194g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|301; (*GB) gi|255552463|ref|XP_002517275.1| (e_value=7e-81) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=1e-21) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G10760.1 (e_value=5e-69) | Symbols: | Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335;; (*ITAG) Solyc10g078310.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59464367-59465239 transcript_region:SL2.40ch10:59464367..59465239- go_terms:GO:0045449 functional_description:"Two-component response regulator ARR11 (AHRD V1 *--- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00032194g0002.1 protein AED:0.29 eAED:0.40 QI:0|0.28|0.37|0.87|0.85|0.75|8|491|311; (*GB) gi|356503365|ref|XP_003520480.1| (e_value=3e-68) PREDICTED: cell division cycle protein 48 homolog AF_1297-like [Glycine max];; (*SWP) sp|Q9LET7|CI111_ARATH (e_value=1e-58) Calmodulin-interacting protein 111 OS=Arabidopsis thaliana GN=CIP111 PE=1 SV=1;; (*TAIR) AT3G56690.1 (e_value=1e-59) | Symbols: CIP111 | Cam interacting protein 111 | chr3:20993869-20998531 REVERSE LENGTH=1022;; (*ITAG) Solyc10g078320.1.1 (e_value=2e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59468277-59476018 transcript_region:SL2.40ch10:59468277..59476018- go_terms:GO:0005524,GO:0017111 functional_description:"AAA family ATPase CDC48 subfamily (AHRD V1 *--- D7D9J0_STAHD); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00037706g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|311; (*GB) gi|225451367|ref|XP_002263590.1| (e_value=2e-124) PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Vitis vinifera];; (*SWP) sp|O04491|PPR26_ARATH (e_value=2e-111) Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1;; (*TAIR) AT1G09680.1 (e_value=1e-112) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3134107-3135930 REVERSE LENGTH=607;; (*ITAG) Solyc11g011410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4479440-4480882 transcript_region:SL2.40ch11:4479440..4480882+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJT0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00037706g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.9|0.9|0.88|0.9|10|769|643; (*GB) gi|296089117|emb|CBI38820.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LE59|GAUT1_ARATH (e_value=0.0) Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1;; (*TAIR) AT3G61130.1 (e_value=0.0) | Symbols: GAUT1, LGT1 | galacturonosyltransferase 1 | chr3:22622399-22625514 FORWARD LENGTH=673;; (*ITAG) Solyc01g093970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77312543-77315441 transcript_region:SL2.40ch01:77312543..77315441+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9IC41_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00001574g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.90|0.83|1|0.90|0.83|12|671|1077; (*GB) gi|225452572|ref|XP_002275511.1| (e_value=0.0) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=2e-114) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1;; (*TAIR) AT3G01370.1 (e_value=0.0) | Symbols: ATCFM2, CFM2 | CRM family member 2 | chr3:139033-143477 FORWARD LENGTH=1011;; (*ITAG) Solyc02g087250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0010181,GO:0003723 NbS00001574g0003.1 protein AED:0.47 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|134 NbS00001574g0005.1 protein AED:0.51 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|67 NbS00029768g0014.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|2|0|204; (*GB) gi|225429628|ref|XP_002280811.1| (e_value=1e-67) PREDICTED: solute carrier family 25 member 44-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q54VX4|MCFJ_DICDI (e_value=8e-16) Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1;; (*TAIR) AT1G72820.1 (e_value=3e-64) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27403457-27404506 FORWARD LENGTH=349;; (*ITAG) Solyc12g096030.1.1 (e_value=4e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63449427-63450461 transcript_region:SL2.40ch12:63449427..63450461+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00029768g0015.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|0.5|0.33|3|0|210; (*GB) gi|147797622|emb|CAN62946.1| (e_value=4e-49) hypothetical protein VITISV_002231 [Vitis vinifera];; (*TAIR) AT5G26200.1 (e_value=4e-40) | Symbols: | Mitochondrial substrate carrier family protein | chr5:9157268-9158296 FORWARD LENGTH=342;; (*ITAG) Solyc12g096030.1.1 (e_value=8e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63449427-63450461 transcript_region:SL2.40ch12:63449427..63450461+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00029768g0017.1 protein AED:0.08 eAED:0.08 QI:0|0.69|0.78|1|0.61|0.71|14|388|488; (*GB) gi|255557651|ref|XP_002519855.1| (e_value=0.0) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT4G19040.1 (e_value=0.0) | Symbols: EDR2 | ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=718;; (*ITAG) Solyc12g096050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63462666-63475970 transcript_region:SL2.40ch12:63462666..63475970- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00029768g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.4|0.66|1|1|1|6|338|279; (*GB) gi|224142915|ref|XP_002324777.1| (e_value=1e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=1e-95) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=1e-96) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc12g096040.1.1 (e_value=1e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63453325-63461014 transcript_region:SL2.40ch12:63453325..63461014- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00014798g0004.1 protein AED:0.25 eAED:0.39 QI:0|0|0|1|0|0|3|0|170; (*GB) gi|356550364|ref|XP_003543557.1| (e_value=4e-58) PREDICTED: probable E3 ubiquitin-protein ligase ARI7-like [Glycine max];; (*SWP) sp|Q8W468|ARI8_ARATH (e_value=9e-58) Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1;; (*TAIR) AT1G65430.1 (e_value=7e-59) | Symbols: ARI8, ATARI8 | IBR domain-containing protein | chr1:24301165-24306159 REVERSE LENGTH=567;; (*ITAG) Solyc06g073340.2.1 (e_value=2e-61) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00004213g0009.1 protein AED:0.11 eAED:0.11 QI:0|1|0.83|1|1|0.83|6|0|298; (*GB) gi|19913109|emb|CAC84547.1| (e_value=0.0) dicarboxylate/tricarboxylate carrier [Nicotiana tabacum];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=2e-70) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=5e-180) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00004213g0008.1 protein AED:0.24 eAED:0.25 QI:65|0.83|0.76|1|1|0.92|13|0|406; (*GB) gi|225429993|ref|XP_002284059.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259497 [Vitis vinifera];; (*TAIR) AT5G25770.1 (e_value=3e-163) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:8969308-8971389 REVERSE LENGTH=360;; (*ITAG) Solyc05g041530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:51247533-51252637 transcript_region:SL2.40ch05:51247533..51252637+ functional_description:"Dienelactone hydrolase domain protein (AHRD V1 *--- C3HWX7_BACTU)"; NbS00004213g0103.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|128 NbS00004213g0102.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|1045 NbS00004213g0109.1 protein AED:0.16 eAED:0.17 QI:0|0.83|0.94|1|0.94|0.89|19|495|1066 NbS00004213g0104.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|132 NbS00004213g0112.1 protein AED:0.27 eAED:1.00 QI:40|0|0|1|0|0|3|386|24 NbS00004213g0202.1 protein AED:0.26 eAED:0.27 QI:465|0.33|0.75|1|0|0.25|4|387|137 NbS00004213g0211.1 protein AED:0.08 eAED:0.08 QI:237|1|1|1|0.66|0.6|10|279|579 NbS00004213g0201.1 protein AED:0.13 eAED:0.13 QI:212|1|0.5|1|0|0|2|0|734 NbS00004213g0314.1 protein AED:0.17 eAED:0.17 QI:234|1|1|1|0.73|0.81|16|589|704 NbS00004213g0315.1 protein AED:0.62 eAED:0.85 QI:0|0|0|0.66|1|1|3|0|93 NbS00004213g0301.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|339 NbS00029028g0012.1 protein AED:0.14 eAED:0.14 QI:74|1|0.75|1|0.57|0.75|8|0|259; (*GB) gi|224058786|ref|XP_002299630.1| (e_value=4e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6N069|NAA16_HUMAN (e_value=1e-84) N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Homo sapiens GN=NAA16 PE=1 SV=2;; (*TAIR) AT1G80410.1 (e_value=2e-163) | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897;; (*ITAG) Solyc06g066790.2.1 (e_value=6e-175) genomic_reference:SL2.40ch06 gene_region:38353956-38371497 transcript_region:SL2.40ch06:38353956..38371497+ go_terms:GO:0005515,GO:0004596 functional_description:"N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V1 **-* NAA16_MOUSE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0004596 NbS00029028g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.94|0.88|1|0.88|0.77|18|589|629; (*GB) gi|255552957|ref|XP_002517521.1| (e_value=0.0) NMDA receptor-regulated protein, putative [Ricinus communis];; (*SWP) sp|Q5R4J9|NAA15_PONAB (e_value=7e-97) N-alpha-acetyltransferase 15, NatA auxiliary subunit OS=Pongo abelii GN=NAA15 PE=2 SV=1;; (*TAIR) AT1G80410.1 (e_value=0.0) | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897;; (*ITAG) Solyc06g066790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38353956-38371497 transcript_region:SL2.40ch06:38353956..38371497+ go_terms:GO:0005515,GO:0004596 functional_description:"N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V1 **-* NAA16_MOUSE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0004596 NbS00029028g0011.1 protein AED:0.17 eAED:0.17 QI:239|1|1|1|0.83|1|7|296|365; (*GB) gi|255552955|ref|XP_002517520.1| (e_value=2e-112) DNA-repair protein xrcc1, putative [Ricinus communis];; (*SWP) sp|Q60596|XRCC1_MOUSE (e_value=2e-23) DNA repair protein XRCC1 OS=Mus musculus GN=Xrcc1 PE=1 SV=2;; (*TAIR) AT1G80420.3 (e_value=2e-105) | Symbols: ATXRCC1 | BRCT domain-containing DNA repair protein | chr1:30235444-30237163 REVERSE LENGTH=353;; (*ITAG) Solyc06g066780.2.1 (e_value=3e-168) genomic_reference:SL2.40ch06 gene_region:38347900-38352894 transcript_region:SL2.40ch06:38347900..38352894+ go_terms:GO:0005622 functional_description:"DNA repair protein like XRCC1 (AHRD V1 ***- Q0WPZ1_ARATH); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00018281g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.6|1|0.5|0.4|5|0|537; (*GB) gi|356495939|ref|XP_003516828.1| (e_value=0.0) PREDICTED: probable nitrite transporter At1g68570-like [Glycine max];; (*SWP) sp|Q9SX20|PTR18_ARATH (e_value=0.0) Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1;; (*TAIR) AT1G68570.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:25746811-25750110 FORWARD LENGTH=596;; (*ITAG) Solyc05g009500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3668010-3672604 transcript_region:SL2.40ch05:3668010..3672604- go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00018281g0016.1 protein AED:0.28 eAED:0.28 QI:287|0.75|0.8|1|0.25|0.2|5|179|192; (*GB) gi|147854311|emb|CAN79113.1| (e_value=1e-43) hypothetical protein VITISV_007009 [Vitis vinifera];; (*SWP) sp|Q9C7N4|GDL15_ARATH (e_value=5e-33) GDSL esterase/lipase At1g29670 OS=Arabidopsis thaliana GN=At1g29670 PE=2 SV=1;; (*TAIR) AT1G29670.1 (e_value=4e-34) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10375843-10377717 FORWARD LENGTH=363;; (*ITAG) Solyc02g071710.2.1 (e_value=2e-79) genomic_reference:SL2.40ch02 gene_region:35660897-35664118 transcript_region:SL2.40ch02:35660897..35664118+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00018281g0005.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|1|1|2|0|135 NbS00018281g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|122 NbS00032602g0005.1 protein AED:0.28 eAED:0.28 QI:47|1|1|1|1|1|7|450|354; (*GB) gi|302143284|emb|CBI21845.3| (e_value=2e-149) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03687.1 (e_value=3e-125) | Symbols: | DTW domain-containing protein | chr1:918308-920306 FORWARD LENGTH=381;; (*ITAG) Solyc07g054070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59780797-59788230 transcript_region:SL2.40ch07:59780797..59788230- functional_description:"DTW domain-containing protein-like (AHRD V1 *-*- Q5Z9X7_ORYSJ); contains Interpro domain(s) IPR005636 DTW "; NbS00014707g0008.1 protein AED:0.10 eAED:0.10 QI:578|0.57|0.6|0.8|0.21|0.26|15|1003|416; (*GB) gi|359485471|ref|XP_002277992.2| (e_value=4e-82) PREDICTED: probable sugar phosphate/phosphate translocator At1g06470-like [Vitis vinifera];; (*SWP) sp|Q8H184|PT106_ARATH (e_value=2e-65) Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1;; (*TAIR) AT1G06470.2 (e_value=2e-66) | Symbols: | Nucleotide/sugar transporter family protein | chr1:1970726-1973540 FORWARD LENGTH=414;; (*ITAG) Solyc07g055700.2.1 (e_value=3e-143) genomic_reference:SL2.40ch07 gene_region:60959511-60969153 transcript_region:SL2.40ch07:60959511..60969153- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (Fragment) (AHRD V1 *--- Q5GMH1_MOUSE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00001246g0005.1 protein AED:0.41 eAED:0.52 QI:0|0|0|1|1|1|2|0|91 NbS00001246g0002.1 protein AED:0.09 eAED:0.09 QI:51|1|0.87|1|0.85|0.75|8|485|411; (*GB) gi|225459530|ref|XP_002284460.1| (e_value=2e-64) PREDICTED: uncharacterized protein LOC100259114 [Vitis vinifera];; (*TAIR) AT4G08310.1 (e_value=1e-48) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone domain CHZ (InterPro:IPR019098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2); Has 53711 Blast hits to 33687 proteins in 1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303; Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes - 15245 (source: NCBI BLink). | chr4:5249047-5252139 REVERSE LENGTH=504;; (*ITAG) Solyc11g012920.1.1 (e_value=6e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5707278-5715062 transcript_region:SL2.40ch11:5707278..5715062- functional_description:"AT4G08310 protein (Fragment) (AHRD V1 ***- B9DFL6_ARATH); contains Interpro domain(s) IPR019098 Histone chaperone domain CHZ "; NbS00022424g0003.1 protein AED:0.09 eAED:0.09 QI:189|1|1|1|0.5|0.57|7|907|227; (*GB) gi|225449629|ref|XP_002279556.1| (e_value=2e-85) PREDICTED: psbP-like protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|O80634|PPL2_ARATH (e_value=5e-80) PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2 PE=1 SV=2;; (*TAIR) AT2G39470.2 (e_value=4e-81) | Symbols: PPL2 | PsbP-like protein 2 | chr2:16476335-16477653 FORWARD LENGTH=230;; (*ITAG) Solyc10g054420.1.1 (e_value=4e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50836162-50837363 transcript_region:SL2.40ch10:50836162..50837363+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- A0YXJ6_LYNSP); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0019898 NbS00033705g0004.1 protein AED:0.17 eAED:0.19 QI:0|0.83|0.42|1|0.83|0.85|7|0|350; (*GB) gi|359492991|ref|XP_002283617.2| (e_value=0.0) PREDICTED: lariat debranching enzyme [Vitis vinifera];; (*SWP) sp|Q94K01|DBR1_ARATH (e_value=3e-172) Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1;; (*TAIR) AT4G31770.1 (e_value=2e-173) | Symbols: ATDBR1, DBR1 | debranching enzyme 1 | chr4:15370296-15372422 REVERSE LENGTH=418;; (*ITAG) Solyc07g017640.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7715733-7722729 transcript_region:SL2.40ch07:7715733..7722729+ go_terms:GO:0008419 functional_description:"Lariat debranching enzyme (AHRD V1 **** B6U6X4_MAIZE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0008419 NbS00028528g0004.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|282; (*ITAG) Solyc12g088380.1.1 (e_value=2e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62234887-62236626 transcript_region:SL2.40ch12:62234887..62236626+ functional_description:"Helix-loop-helix DNA-binding domain containing protein (AHRD V1 *--- Q2QMV9_ORYSJ)"; NbS00021873g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.2|0.16|0.83|0.2|0.5|6|0|195; (*ITAG) Solyc01g073870.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00021873g0014.1 protein AED:0.15 eAED:0.18 QI:0|0|0|0.5|0|0.5|2|0|132 NbS00021873g0006.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|142; (*GB) gi|224090791|ref|XP_002309083.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=1e-19) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT2G37740.1 (e_value=2e-20) | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 | chr2:15827706-15828620 REVERSE LENGTH=304;; (*ITAG) Solyc09g089590.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64669031-64669624 transcript_region:SL2.40ch09:64669031..64669624+ go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00021873g0013.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|110; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-30) hypothetical protein [Nicotiana tabacum]; NbS00008405g0008.1 protein AED:0.18 eAED:0.20 QI:0|0.84|0.81|1|0.80|0.77|27|0|1523; (*GB) gi|297738490|emb|CBI27735.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=3e-161) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT3G43300.1 (e_value=0.0) | Symbols: ATMIN7, BEN1 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1758;; (*ITAG) Solyc12g017830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbC23264274g0001.1 protein AED:0.01 eAED:0.01 QI:15|1|0.5|1|0|0|2|0|37 NbS00006921g0003.1 protein AED:0.27 eAED:0.27 QI:56|0.87|0.88|1|0.5|0.44|9|236|477; (*GB) gi|356550768|ref|XP_003543756.1| (e_value=2e-178) PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670-like [Glycine max];; (*SWP) sp|Q5XF57|Y5576_ARATH (e_value=7e-148) Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1;; (*TAIR) AT5G57670.2 (e_value=5e-149) | Symbols: | Protein kinase superfamily protein | chr5:23360531-23363694 REVERSE LENGTH=579;; (*ITAG) Solyc07g006620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1479714-1488055 transcript_region:SL2.40ch07:1479714..1488055+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021302g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|61 NbS00002083g0006.1 protein AED:0.07 eAED:0.09 QI:687|0|0.5|1|0|0.5|2|658|116; (*ITAG) Solyc06g011460.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00002083g0005.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|74 NbS00002083g0008.1 protein AED:0.27 eAED:0.27 QI:214|0.66|0.5|0.75|0.66|0.75|4|0|185; (*GB) gi|224116504|ref|XP_002317317.1| (e_value=4e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|O04147|CPD_ARATH (e_value=2e-47) Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1;; (*TAIR) AT4G18930.1 (e_value=1e-48) | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370797-10371885 FORWARD LENGTH=181;; (*ITAG) Solyc02g071750.2.1 (e_value=5e-108) genomic_reference:SL2.40ch02 gene_region:35697767-35702148 transcript_region:SL2.40ch02:35697767..35702148- go_terms:GO:0004112,GO:0005622 functional_description:"Cyclic phosphodiesterase (AHRD V1 ***- D7M9D2_ARALY); contains Interpro domain(s) IPR012386 2 , 3 cyclic phosphodiesterase, plant "; GO:0004112,GO:0005622 NbS00005568g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|514; (*GB) gi|359478335|ref|XP_002282251.2| (e_value=2e-158) PREDICTED: uncharacterized protein LOC100248459 [Vitis vinifera];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=2e-101) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT5G03150.1 (e_value=2e-102) | Symbols: JKD | C2H2-like zinc finger protein | chr5:745849-748678 FORWARD LENGTH=503;; (*ITAG) Solyc06g075250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43081875-43084376 transcript_region:SL2.40ch06:43081875..43084376- go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU4_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00023343g0001.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.66|1|1|1|9|33|515; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=5e-137) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|Q39008|M3K1_ARATH (e_value=1e-42) Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=1e-120) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc02g090430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46568708-46573422 transcript_region:SL2.40ch02:46568708..46573422+ go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00035600g0003.1 protein AED:0.30 eAED:0.30 QI:0|0.2|0|1|0.2|0.16|6|0|296; (*GB) gi|293332789|ref|NP_001169463.1| (e_value=1e-55) uncharacterized protein LOC100383334 [Zea mays];; (*SWP) sp|P37287|PIGA_HUMAN (e_value=1e-20) Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1;; (*TAIR) AT3G45100.2 (e_value=2e-35) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00035600g0004.1 protein AED:0.37 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|93; (*GB) gi|225425746|ref|XP_002276549.1| (e_value=2e-39) PREDICTED: transcription factor bHLH135 [Vitis vinifera];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=1e-28) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G26945.1 (e_value=1e-37) | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9351571-9352474 FORWARD LENGTH=94;; (*ITAG) Solyc05g007210.2.1 (e_value=1e-45) genomic_reference:SL2.40ch05 gene_region:1820613-1822267 transcript_region:SL2.40ch05:1820613..1822267- go_terms:GO:0005634,GO:0045449 functional_description:"DNA-binding protein-like (AHRD V1 ***- Q9FLE9_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00009236g0010.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.8|0.5|0.6|5|0|550; (*GB) gi|15418710|gb|AAG31014.1| (e_value=1e-98) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=1e-71) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=6e-55) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc09g098130.1.1 (e_value=7e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:67301675-67305412 transcript_region:SL2.40ch09:67301675..67305412+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009236g0008.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc12g099650.1.1 (e_value=4e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65050922-65051263 transcript_region:SL2.40ch12:65050922..65051263+ functional_description:"Photosystem II 5 kDa protein, chloroplastic (AHRD V1 ***- PST2_GOSHI)"; NbS00009236g0011.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.66|1|1|1|6|122|238; (*GB) gi|359473203|ref|XP_002265544.2| (e_value=5e-120) PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera];; (*SWP) sp|Q54XX1|SRPRB_DICDI (e_value=4e-20) Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1;; (*TAIR) AT5G05670.1 (e_value=3e-111) | Symbols: | signal recognition particle binding | chr5:1695916-1697534 REVERSE LENGTH=260;; (*ITAG) Solyc11g043150.1.1 (e_value=4e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34946955-34953284 transcript_region:SL2.40ch11:34946955..34953284- go_terms:GO:0005525 functional_description:"Signal recognition particle receptor beta subunit-like protein (AHRD V1 **-- Q0WRZ7_ARATH); contains Interpro domain(s) IPR019009 Signal recognition particle receptor, beta subunit "; GO:0005525 NbS00014105g0004.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|82; (*GB) gi|47497035|dbj|BAD19088.1| (e_value=5e-27) putative 60S ribosomal protein L39 [Oryza sativa Japonica Group];; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=3e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=8e-28) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=7e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00014105g0011.1 protein AED:0.07 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|424; (*GB) gi|255539637|ref|XP_002510883.1| (e_value=6e-114) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q9FLI3|P2C75_ARATH (e_value=1e-93) Probable protein phosphatase 2C 75 OS=Arabidopsis thaliana GN=AHG1 PE=2 SV=1;; (*TAIR) AT5G51760.1 (e_value=1e-94) | Symbols: AHG1 | Protein phosphatase 2C family protein | chr5:21026916-21028912 FORWARD LENGTH=416;; (*ITAG) Solyc03g006960.2.1 (e_value=2e-132) genomic_reference:SL2.40ch03 gene_region:1520013-1522985 transcript_region:SL2.40ch03:1520013..1522985- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00014105g0009.1 protein AED:0.12 eAED:0.12 QI:0|0|0.25|0.75|0.33|0|4|292|81 NbS00014105g0002.1 protein AED:0.24 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|381; (*GB) gi|359490239|ref|XP_002271104.2| (e_value=3e-92) PREDICTED: receptor-like serine/threonine-protein kinase At2g45590-like [Vitis vinifera];; (*SWP) sp|O64639|Y2559_ARATH (e_value=2e-76) Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1;; (*TAIR) AT2G45590.1 (e_value=2e-77) | Symbols: | Protein kinase superfamily protein | chr2:18786725-18788776 FORWARD LENGTH=683;; (*ITAG) Solyc03g006920.2.1 (e_value=1e-169) genomic_reference:SL2.40ch03 gene_region:1487731-1490949 transcript_region:SL2.40ch03:1487731..1490949- go_terms:GO:0006468 functional_description:"Receptor kinase-like protein (AHRD V1 ***- Q9STJ8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014105g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|224134603|ref|XP_002321863.1| (e_value=7e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|O64639|Y2559_ARATH (e_value=1e-86) Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1;; (*TAIR) AT2G45590.1 (e_value=8e-88) | Symbols: | Protein kinase superfamily protein | chr2:18786725-18788776 FORWARD LENGTH=683;; (*ITAG) Solyc03g006920.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:1487731-1490949 transcript_region:SL2.40ch03:1487731..1490949- go_terms:GO:0006468 functional_description:"Receptor kinase-like protein (AHRD V1 ***- Q9STJ8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016050g0009.1 protein AED:0.12 eAED:0.12 QI:418|1|1|1|0.83|0.71|7|55|360; (*GB) gi|255537663|ref|XP_002509898.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g056150.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47466156-47469182 transcript_region:SL2.40ch12:47466156..47469182+ go_terms:GO:0042318 functional_description:"Peptidase C45 acyl-coenzyme A/6-aminopenicillanic acid acyl-transferase (AHRD V1 **-- B6THR2_MAIZE); contains Interpro domain(s) IPR005079 Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase "; GO:0042318 NbS00016050g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|1|1|0.75|4|0|705; (*GB) gi|224053817|ref|XP_002297994.1| (e_value=2e-176) cation proton exchanger [Populus trichocarpa];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=9e-174) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.2 (e_value=8e-176) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16640859 REVERSE LENGTH=742;; (*ITAG) Solyc12g056160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47478031-47481044 transcript_region:SL2.40ch12:47478031..47481044+ go_terms:GO:0016021 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 ***- CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0016021 NbS00018168g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|654; (*GB) gi|359485428|ref|XP_002276142.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g58590-like [Vitis vinifera];; (*SWP) sp|Q0WN01|PP286_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2;; (*TAIR) AT3G58590.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:21666262-21668487 FORWARD LENGTH=741;; (*ITAG) Solyc07g053380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59157996-59160257 transcript_region:SL2.40ch07:59157996..59160257- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LW55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029309g0005.1 protein AED:0.18 eAED:0.19 QI:0|0.92|0.86|1|0.92|0.93|15|443|638; (*GB) gi|255552860|ref|XP_002517473.1| (e_value=0.0) structure-specific recognition protein, putative [Ricinus communis];; (*SWP) sp|Q39601|SSRP1_CATRO (e_value=0.0) FACT complex subunit SSRP1 OS=Catharanthus roseus GN=SSRP1 PE=2 SV=1;; (*TAIR) AT3G28730.1 (e_value=0.0) | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group | chr3:10784954-10788498 FORWARD LENGTH=646;; (*ITAG) Solyc02g087710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44607055-44613931 transcript_region:SL2.40ch02:44607055..44613931- go_terms:GO:0042393 functional_description:"FACT complex subunit SSRP1 (AHRD V1 **-- C0HB78_SALSA); contains Interpro domain(s) IPR000969 Structure-specific recognition protein "; GO:0042393 NbS00029309g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|0.66|0.25|4|0|425; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=0.0) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=2e-144) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc02g087670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00042613g0005.1 protein AED:0.21 eAED:0.21 QI:256|0.75|0.4|1|0.75|0.6|5|0|495; (*GB) gi|296089714|emb|CBI39533.3| (e_value=8e-125) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80494|P2B15_ARATH (e_value=1e-72) F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2;; (*TAIR) AT1G09155.1 (e_value=1e-73) | Symbols: AtPP2-B15, PP2-B15 | phloem protein 2-B15 | chr1:2949831-2950842 REVERSE LENGTH=289;; (*ITAG) Solyc01g100010.2.1 (e_value=1e-148) genomic_reference:SL2.40ch01 gene_region:81848944-81850943 transcript_region:SL2.40ch01:81848944..81850943- go_terms:GO:0030246 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246 NbS00024643g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.44|0.36|0.52|0.77|0.84|19|295|918; (*GB) gi|297739742|emb|CBI29924.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O75175|CNOT3_HUMAN (e_value=5e-51) CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1;; (*TAIR) AT5G18230.1 (e_value=4e-145) | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=843;; (*ITAG) Solyc12g019860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:11996511-12027840 transcript_region:SL2.40ch12:11996511..12027840+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 3 (AHRD V1 *-*- Q7ZVL4_DANRE); contains Interpro domain(s) IPR012270 CCR4-NOT complex, subunit 3/ 5 "; GO:0005634 NbS00057462g0008.1 protein AED:0.25 eAED:0.25 QI:0|1|0.57|1|1|1|7|0|401; (*GB) gi|224088208|ref|XP_002308371.1| (e_value=2e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-32) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G06800.1 (e_value=2e-72) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g078720.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00057462g0007.1 protein AED:0.59 eAED:0.60 QI:0|0|0|0.5|0.66|0.5|4|0|190; (*GB) gi|224088208|ref|XP_002308371.1| (e_value=4e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06800.1 (e_value=6e-22) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g078720.1.1 (e_value=4e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00020576g0012.1 protein AED:0.25 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|484; (*GB) gi|359488622|ref|XP_003633791.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257639 [Vitis vinifera];; (*SWP) sp|Q8NB46|ANR52_HUMAN (e_value=4e-16) Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Homo sapiens GN=ANKRD52 PE=1 SV=3;; (*TAIR) AT3G01750.1 (e_value=1e-112) | Symbols: | Ankyrin repeat family protein | chr3:270615-272691 FORWARD LENGTH=664;; (*ITAG) Solyc03g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60385-67905 transcript_region:SL2.40ch03:60385..67905- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 *-*- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00020576g0003.1 protein AED:0.39 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|224055673|ref|XP_002298596.1| (e_value=1e-114) predicted protein [Populus trichocarpa];; (*TAIR) AT3G01750.1 (e_value=5e-102) | Symbols: | Ankyrin repeat family protein | chr3:270615-272691 FORWARD LENGTH=664;; (*ITAG) Solyc03g005090.2.1 (e_value=9e-130) genomic_reference:SL2.40ch03 gene_region:60385-67905 transcript_region:SL2.40ch03:60385..67905- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 *-*- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00020576g0013.1 protein AED:0.43 eAED:0.47 QI:0|0.66|0.25|1|0.66|0.75|4|0|185; (*ITAG) Solyc03g097080.2.1 (e_value=4e-64) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00007016g0004.1 protein AED:0.00 eAED:0.00 QI:323|1|1|1|0.75|0.8|5|240|616; (*GB) gi|224078834|ref|XP_002305646.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55G83|ABKC_DICDI (e_value=8e-74) Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1;; (*TAIR) AT1G11390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc02g084400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42094686-42099504 transcript_region:SL2.40ch02:42094686..42099504- go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 **-- ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00007016g0020.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.66|1|0.8|0.83|6|0|391; (*GB) gi|4827251|dbj|BAA77604.1| (e_value=0.0) plastidic aldolase NPALDP1 [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc02g084440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42111042-42113547 transcript_region:SL2.40ch02:42111042..42113547- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q9SXX4_NICPA); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00007016g0006.1 protein AED:0.50 eAED:0.75 QI:0|0|0|0.5|1|1|4|0|188 NbS00007016g0018.1 protein AED:0.18 eAED:0.20 QI:380|0.75|0.8|1|0.25|0.4|5|526|194; (*GB) gi|359476640|ref|XP_003631872.1| (e_value=1e-94) PREDICTED: probable salt tolerance-like protein At1g78600-like [Vitis vinifera];; (*SWP) sp|Q9SYM2|STHY_ARATH (e_value=7e-27) Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2;; (*TAIR) AT4G38960.1 (e_value=1e-72) | Symbols: | B-box type zinc finger family protein | chr4:18161576-18163045 FORWARD LENGTH=183;; (*ITAG) Solyc01g110370.2.1 (e_value=1e-82) genomic_reference:SL2.40ch01 gene_region:88848214-88852895 transcript_region:SL2.40ch01:88848214..88852895- go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 3 (AHRD V1 *--- COL3_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbC24508356g0003.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|46092520|dbj|BAD14380.1| (e_value=5e-43) hypothetical protein [Solanum melongena];; (*TAIR) AT1G03350.1 (e_value=2e-17) | Symbols: | BSD domain-containing protein | chr1:822834-824246 REVERSE LENGTH=470;; (*ITAG) Solyc09g074060.2.1 (e_value=6e-53) genomic_reference:SL2.40ch09 gene_region:61255344-61256749 transcript_region:SL2.40ch09:61255344..61256749- functional_description:"BSD domain containing 1 (AHRD V1 *-*- A9JT15_DANRE); contains Interpro domain(s) IPR005607 BSD "; NbS00006569g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.5|0.75|1|1|4|226|114; (*GB) gi|255559488|ref|XP_002520764.1| (e_value=5e-61) small nuclear ribonucleoprotein sm d1, putative [Ricinus communis];; (*SWP) sp|P62315|SMD1_MOUSE (e_value=3e-44) Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1;; (*TAIR) AT4G02840.1 (e_value=9e-63) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116;; (*ITAG) Solyc09g064660.2.1 (e_value=1e-65) genomic_reference:SL2.40ch09 gene_region:57577967-57581962 transcript_region:SL2.40ch09:57577967..57581962+ go_terms:GO:0005515,GO:0003729 functional_description:"Small nuclear ribonucleoprotein Sm D1 (AHRD V1 ***- B6TXH2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0003729 NbS00027704g0006.1 protein AED:0.37 eAED:0.40 QI:0|0|0|0.75|0.33|0.25|4|0|181; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027704g0004.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|77 NbS00002120g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|463; (*GB) gi|296086090|emb|CBI31531.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=3e-65) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT2G39980.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16688437-16689885 REVERSE LENGTH=482;; (*ITAG) Solyc05g052670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62027455-62028840 transcript_region:SL2.40ch05:62027455..62028840- go_terms:GO:0016747 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 1 (AHRD V1 **-- Q00M72_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00002120g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|1|0.5|4|0|176; (*GB) gi|224109362|ref|XP_002315172.1| (e_value=1e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|O04202|EIF3F_ARATH (e_value=5e-61) Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1;; (*TAIR) AT2G39990.1 (e_value=4e-62) | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293;; (*ITAG) Solyc05g052690.2.1 (e_value=1e-83) genomic_reference:SL2.40ch05 gene_region:62044294-62048361 transcript_region:SL2.40ch05:62044294..62048361- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 5 (AHRD V1 ***- B4FRD9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00002120g0001.1 protein AED:0.34 eAED:0.62 QI:0|0|0|0.33|1|1|6|0|395; (*GB) gi|113205171|gb|AAT40519.2| (e_value=1e-16) hypothetical protein SDM1_22t00007 [Solanum demissum];; (*ITAG) Solyc07g064380.2.1 (e_value=3e-21) genomic_reference:SL2.40ch07 gene_region:63785152-63791807 transcript_region:SL2.40ch07:63785152..63791807- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbC26210069g0005.1 protein AED:0.30 eAED:0.31 QI:226|0.5|0.71|1|0.5|0.85|7|256|297; (*GB) gi|225451641|ref|XP_002277244.1| (e_value=2e-124) PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Vitis vinifera];; (*SWP) sp|O82768|HIS2_ARATH (e_value=3e-123) Histidine biosynthesis bifunctional protein hisIE, chloroplastic OS=Arabidopsis thaliana GN=At1g31860 PE=2 SV=1;; (*TAIR) AT1G31860.1 (e_value=2e-124) | Symbols: AT-IE, HISN2 | histidine biosynthesis bifunctional protein (HISIE) | chr1:11434250-11436530 REVERSE LENGTH=281;; (*ITAG) Solyc10g005930.1.1 (e_value=6e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:722719-725047 transcript_region:SL2.40ch10:722719..725047- go_terms:GO:0004636,GO:0004635 functional_description:"Phosphoribosyl-AMP cyclohydrolase (AHRD V1 *-** Q1IX38_DEIGD); contains Interpro domain(s) IPR002496 Phosphoribosyl-AMP cyclohydrolase "; GO:0004636,GO:0004635 NbS00002992g0004.1 protein AED:0.18 eAED:0.18 QI:125|1|1|1|0.8|0.83|6|376|191; (*GB) gi|76160947|gb|ABA40437.1| (e_value=1e-130) 40S ribosomal protein S7-like protein [Solanum tuberosum];; (*SWP) sp|Q9ZNS1|RS7_AVIMR (e_value=1e-115) 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=3e-114) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc06g069090.2.1 (e_value=5e-133) genomic_reference:SL2.40ch06 gene_region:39269885-39272377 transcript_region:SL2.40ch06:39269885..39272377- go_terms:GO:0005840 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0005840 NbS00032223g0004.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|225446424|ref|XP_002274948.1| (e_value=2e-116) PREDICTED: zinc finger CCCH domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q9ZWA1|C3H2_ARATH (e_value=7e-78) Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1;; (*TAIR) AT1G03790.1 (e_value=5e-79) | Symbols: SOM | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:954589-955770 FORWARD LENGTH=393;; (*ITAG) Solyc07g053750.1.1 (e_value=2e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59504676-59505929 transcript_region:SL2.40ch07:59504676..59505929- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 2 (AHRD V1 *-*- C3H2_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00032223g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|57012875|sp|Q9LW49.1|ERF4_NICSY (e_value=6e-131) RecName: Full=Ethylene-responsive transcription factor 4; AltName: Full=Ethylene-responsive element-binding factor 3; Short=EREBP-3; AltName: Full=Ethylene-responsive element-binding factor 4 homolog; AltName: Full=NsERF3;; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=2e-132) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1;; (*TAIR) AT5G44210.1 (e_value=1e-25) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc07g053740.1.1 (e_value=3e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59491419-59492096 transcript_region:SL2.40ch07:59491419..59492096+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00032223g0003.1 protein AED:0.33 eAED:0.33 QI:183|1|1|1|1|1|5|352|286; (*GB) gi|224133470|ref|XP_002328050.1| (e_value=3e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93YW5|P2C58_ARATH (e_value=1e-128) Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1;; (*TAIR) AT4G28400.1 (e_value=1e-129) | Symbols: | Protein phosphatase 2C family protein | chr4:14048499-14050118 FORWARD LENGTH=283;; (*ITAG) Solyc07g053760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59516057-59518480 transcript_region:SL2.40ch07:59516057..59518480- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00044996g0003.1 protein AED:0.20 eAED:0.20 QI:140|0.83|0.71|0.85|0.5|0.71|7|0|195; (*GB) gi|298204919|emb|CBI34226.3| (e_value=5e-118) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66L33|MK16A_XENLA (e_value=8e-68) Protein MAK16 homolog A OS=Xenopus laevis GN=mak16-a PE=2 SV=1;; (*TAIR) AT1G23280.1 (e_value=2e-109) | Symbols: | MAK16 protein-related | chr1:8260865-8262650 REVERSE LENGTH=303;; (*ITAG) Solyc01g005810.2.1 (e_value=2e-130) genomic_reference:SL2.40ch01 gene_region:530323-534729 transcript_region:SL2.40ch01:530323..534729+ functional_description:"Mak16 protein (AHRD V1 *-*- Q2HUC0_MEDTR); contains Interpro domain(s) IPR006958 Mak16 protein "; NbS00046516g0001.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|181; (*GB) gi|255553389|ref|XP_002517736.1| (e_value=9e-77) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=6e-73) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=1e-50) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc03g059160.1.1 (e_value=5e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:25212208-25219003 transcript_region:SL2.40ch03:25212208..25219003+ functional_description:"CASTOR protein (Fragment) (AHRD V1 ***- Q1A3R7_SOYBN)"; NbS00024985g0010.1 protein AED:0.05 eAED:0.05 QI:729|1|1|1|0.83|0.71|7|960|281; (*GB) gi|158145803|gb|ABW22133.1| (e_value=3e-99) putative At5g37260-like protein [Solanum peruvianum];; (*SWP) sp|Q6R0H1|LHY_ARATH (e_value=7e-31) Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2;; (*TAIR) AT5G17300.1 (e_value=5e-53) | Symbols: RVE1 | Homeodomain-like superfamily protein | chr5:5690435-5692435 REVERSE LENGTH=387;; (*ITAG) Solyc02g036370.2.1 (e_value=1e-103) genomic_reference:SL2.40ch02 gene_region:21309276-21311945 transcript_region:SL2.40ch02:21309276..21311945- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR85_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00024985g0003.1 protein AED:0.30 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|365222950|gb|AEW69827.1| (e_value=0.0) Hop-interacting protein THI142 [Solanum lycopersicum];; (*TAIR) AT1G62390.1 (e_value=5e-137) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g081200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39832231-39834567 transcript_region:SL2.40ch02:39832231..39834567- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT1_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024985g0002.1 protein AED:0.41 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|182; (*GB) gi|365222950|gb|AEW69827.1| (e_value=3e-75) Hop-interacting protein THI142 [Solanum lycopersicum];; (*SWP) sp|Q91Z38|TTC1_MOUSE (e_value=4e-14) Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1;; (*TAIR) AT1G62390.1 (e_value=2e-67) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g081200.1.1 (e_value=7e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39832231-39834567 transcript_region:SL2.40ch02:39832231..39834567- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT1_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024985g0004.1 protein AED:0.37 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|280; (*GB) gi|365222950|gb|AEW69827.1| (e_value=1e-105) Hop-interacting protein THI142 [Solanum lycopersicum];; (*TAIR) AT1G62390.1 (e_value=7e-86) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g081200.1.1 (e_value=7e-130) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39832231-39834567 transcript_region:SL2.40ch02:39832231..39834567- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT1_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024985g0012.1 protein AED:0.11 eAED:0.11 QI:264|1|1|1|1|1|4|245|319; (*GB) gi|350539175|ref|NP_001233867.1| (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase [Solanum lycopersicum];; (*SWP) sp|P31237|ACCO_ACTDE (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1;; (*TAIR) AT1G05010.1 (e_value=6e-166) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc02g081190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39828688-39830393 transcript_region:SL2.40ch02:39828688..39830393+ go_terms:GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q9ZWP2_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00013157g0008.1 protein AED:0.10 eAED:0.10 QI:550|1|0.5|1|1|1|2|0|655; (*GB) gi|224058453|ref|XP_002299517.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAJ9|Y1385_ARATH (e_value=1e-161) BTB/POZ domain-containing protein At1g63850 OS=Arabidopsis thaliana GN=At1g63850 PE=1 SV=1;; (*TAIR) AT1G63850.1 (e_value=8e-163) | Symbols: | BTB/POZ domain-containing protein | chr1:23696962-23698708 FORWARD LENGTH=548;; (*ITAG) Solyc08g081380.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61613291-61616090 transcript_region:SL2.40ch08:61613291..61616090+ go_terms:GO:0005515 functional_description:"At5g63850-like protein (Fragment) (AHRD V1 *-*- Q3YI76_ARALY); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00013157g0007.1 protein AED:0.05 eAED:0.14 QI:0|0.66|0.5|1|1|1|4|134|165; (*GB) gi|297742223|emb|CBI34372.3| (e_value=2e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q99288|DET1_YEAST (e_value=7e-22) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=5e-51) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc08g081390.2.1 (e_value=2e-93) genomic_reference:SL2.40ch08 gene_region:61616212-61618829 transcript_region:SL2.40ch08:61616212..61618829- go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 *-*- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00043523g0015.1 protein AED:0.15 eAED:0.15 QI:278|1|1|1|0.83|0.71|7|523|297; (*GB) gi|350537971|ref|NP_001234320.1| (e_value=1e-127) protein ASC1 [Solanum lycopersicum];; (*SWP) sp|Q9M6A3|ASC1_SOLLC (e_value=4e-129) Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2;; (*TAIR) AT3G25540.1 (e_value=8e-106) | Symbols: LAG1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr3:9274752-9276261 FORWARD LENGTH=310;; (*ITAG) Solyc03g114600.2.1 (e_value=1e-129) genomic_reference:SL2.40ch03 gene_region:58592692-58594435 transcript_region:SL2.40ch03:58592692..58594435- go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00043523g0020.1 protein AED:0.21 eAED:0.21 QI:0|1|0.90|1|1|1|11|466|662; (*GB) gi|225455758|ref|XP_002269501.1| (e_value=0.0) PREDICTED: uridine-cytidine kinase C [Vitis vinifera];; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=1e-125) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT1G73980.1 (e_value=0.0) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:27820292-27823527 REVERSE LENGTH=643;; (*ITAG) Solyc03g114580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58573165-58583411 transcript_region:SL2.40ch03:58573165..58583411- go_terms:GO:0006171,GO:0008152,GO:0016773 functional_description:"Uridine kinase (AHRD V1 *-*- C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0006171,GO:0008152,GO:0016773 NbS00043523g0017.1 protein AED:0.20 eAED:0.20 QI:252|1|1|1|1|1|6|385|342; (*GB) gi|255541908|ref|XP_002512018.1| (e_value=0.0) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|P57760|STK16_RAT (e_value=1e-53) Serine/threonine-protein kinase 16 OS=Rattus norvegicus GN=Stk16 PE=2 SV=2;; (*TAIR) AT5G08160.1 (e_value=0.0) | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625903-2627942 REVERSE LENGTH=347;; (*ITAG) Solyc03g114590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58588643-58592578 transcript_region:SL2.40ch03:58588643..58592578+ go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q8L9Q3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00043523g0018.1 protein AED:0.36 eAED:0.36 QI:0|0.45|0.5|0.91|0.45|0.41|12|116|453; (*GB) gi|356519188|ref|XP_003528255.1| (e_value=6e-155) PREDICTED: LOW QUALITY PROTEIN: acetyl-coenzyme A synthetase-like [Glycine max];; (*SWP) sp|F4KBF3|AAE17_ARATH (e_value=3e-104) Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1;; (*TAIR) AT5G23050.1 (e_value=2e-105) | Symbols: AAE17 | acyl-activating enzyme 17 | chr5:7731513-7735399 REVERSE LENGTH=721;; (*ITAG) Solyc03g114460.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:58506023-58517475 transcript_region:SL2.40ch03:58506023..58517475+ go_terms:GO:0030729,GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0030729,GO:0003987 NbS00002898g0022.1 protein AED:0.13 eAED:0.13 QI:0|0.58|0.38|1|0.58|0.61|13|0|678; (*GB) gi|359475077|ref|XP_002275411.2| (e_value=0.0) PREDICTED: tRNA-dihydrouridine synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9T0J6|DUS3L_ARATH (e_value=0.0) tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=2 SV=2;; (*TAIR) AT4G38890.1 (e_value=0.0) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr4:18135909-18139100 REVERSE LENGTH=691;; (*ITAG) Solyc01g110490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88946070-88950914 transcript_region:SL2.40ch01:88946070..88950914+ go_terms:GO:0008152,GO:0008270,GO:0055114 functional_description:"tRNA-dihydrouridine synthase 3-like (AHRD V1 ***- B5X496_SALSA); contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase "; GO:0008152,GO:0008270,GO:0055114 NbS00002898g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|255538892|ref|XP_002510511.1| (e_value=1e-58) Auxin-induced protein 6B, putative [Ricinus communis];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=5e-15) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G75590.1 (e_value=3e-49) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28383250-28383714 REVERSE LENGTH=154;; (*ITAG) Solyc01g110560.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:88974036-88974893 transcript_region:SL2.40ch01:88974036..88974893+ go_terms:GO:0005516 functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00002898g0021.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.75|1|0.66|0.75|4|0|526; (*GB) gi|225427794|ref|XP_002269363.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255631 [Vitis vinifera];; (*SWP) sp|Q69IL4|RF2A_ORYSJ (e_value=1e-27) Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=2e-119) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc01g110480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88940597-88943622 transcript_region:SL2.40ch01:88940597..88943622+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 *-*- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00002898g0023.1 protein AED:0.40 eAED:0.61 QI:162|0.33|0.5|1|0|0|4|0|85; (*ITAG) Solyc01g110540.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:88964018-88966597 transcript_region:SL2.40ch01:88964018..88966597+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002898g0020.1 protein AED:0.04 eAED:0.04 QI:61|0.66|0.75|1|1|1|4|334|256; (*GB) gi|255543903|ref|XP_002513014.1| (e_value=2e-81) Ribosome-binding factor A, putative [Ricinus communis];; (*SWP) sp|O65693|RBFA_ARATH (e_value=4e-80) Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2;; (*TAIR) AT4G34730.1 (e_value=3e-81) | Symbols: | ribosome-binding factor A family protein | chr4:16570019-16571274 REVERSE LENGTH=215;; (*ITAG) Solyc01g110550.2.1 (e_value=4e-121) genomic_reference:SL2.40ch01 gene_region:88966945-88970984 transcript_region:SL2.40ch01:88966945..88970984- go_terms:GO:0003723 functional_description:"Ribosome-binding factor A (AHRD V1 **** B6TDG2_MAIZE); contains Interpro domain(s) IPR000238 Ribosome-binding factor A "; GO:0003723 NbS00002898g0003.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|494; (*GB) gi|37983539|gb|AAR06289.1| (e_value=0.0) 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum];; (*SWP) sp|P52418|PUR1_SOYBN (e_value=0.0) Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1;; (*TAIR) AT4G34740.1 (e_value=0.0) | Symbols: ATASE2, CIA1, ATPURF2, ASE2 | GLN phosphoribosyl pyrophosphate amidotransferase 2 | chr4:16574894-16576579 REVERSE LENGTH=561;; (*ITAG) Solyc01g110520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88954731-88956779 transcript_region:SL2.40ch01:88954731..88956779- go_terms:GO:0004044 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 *-*- GLMS_METKA); contains Interpro domain(s) IPR005854 Amidophosphoribosyl transferase "; GO:0004044 NbS00002898g0024.1 protein AED:0.27 eAED:0.27 QI:136|1|1|1|0|0.5|2|325|114; (*GB) gi|224097152|ref|XP_002310854.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94G00|PIN1_MALDO (e_value=1e-65) Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1;; (*TAIR) AT2G18040.1 (e_value=4e-60) | Symbols: PIN1AT | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 | chr2:7842346-7843537 FORWARD LENGTH=119;; (*ITAG) Solyc01g110530.2.1 (e_value=8e-72) genomic_reference:SL2.40ch01 gene_region:88959394-88962414 transcript_region:SL2.40ch01:88959394..88962414- go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase C (AHRD V1 *--* PPIC_ECOLI); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type "; GO:0003755 NbS00025846g0010.1 protein AED:0.25 eAED:0.34 QI:0|0.14|0|0.62|0.42|0.62|8|0|210; (*GB) gi|356511754|ref|XP_003524588.1| (e_value=1e-94) PREDICTED: replication factor C subunit 3-like [Glycine max];; (*SWP) sp|Q2TBV1|RFC3_BOVIN (e_value=3e-46) Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1;; (*TAIR) AT5G27740.1 (e_value=5e-94) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc01g020440.2.1 (e_value=3e-103) genomic_reference:SL2.40ch01 gene_region:30867272-30881047 transcript_region:SL2.40ch01:30867272..30881047- go_terms:GO:0005515,GO:0003689 functional_description:"Replication factor C subunit 5 (AHRD V1 ***- B6T5I0_MAIZE); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005515,GO:0003689 NbS00025846g0007.1 protein AED:0.69 eAED:0.69 QI:0|1|0|1|1|1|2|0|97; (*GB) gi|255569476|ref|XP_002525705.1| (e_value=2e-50) BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis];; (*SWP) sp|Q9SE95|FIP2_ARATH (e_value=3e-44) FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1;; (*TAIR) AT5G55000.2 (e_value=3e-45) | Symbols: FIP2 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein | chr5:22318644-22321599 FORWARD LENGTH=298;; (*ITAG) Solyc10g076860.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59148140-59170739 transcript_region:SL2.40ch10:59148140..59170739+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- Q55D73_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00051460g0001.1 protein AED:0.11 eAED:0.11 QI:43|1|0|1|0|0|2|0|38 NbS00035685g0001.1 protein AED:0.26 eAED:0.33 QI:0|0|0|1|1|1|2|0|167; (*ITAG) Solyc04g005480.1.1 (e_value=4e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:323321-323833 transcript_region:SL2.40ch04:323321..323833- functional_description:"Unknown Protein (AHRD V1)"; NbS00035685g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|0.75|0.6|5|1267|272; (*GB) gi|255542104|ref|XP_002512116.1| (e_value=1e-33) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G13920.1 (e_value=6e-19) | Symbols: | Remorin family protein | chr1:4758188-4759754 FORWARD LENGTH=345;; (*ITAG) Solyc04g005470.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:321164-322741 transcript_region:SL2.40ch04:321164..322741+ functional_description:"Remorin family protein (AHRD V1 *-*- D7KBE9_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00027213g0001.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|98; (*GB) gi|311893257|dbj|BAJ25798.1| (e_value=2e-34) putative non-specific lipid-transfer protein type 2 subfamily [Nicotiana tabacum];; (*SWP) sp|P82353|NLTP2_PRUAR (e_value=5e-29) Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1;; (*TAIR) AT3G18280.1 (e_value=4e-33) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:6267102-6267392 FORWARD LENGTH=96;; (*ITAG) Solyc02g086310.1.1 (e_value=7e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43581253-43581537 transcript_region:SL2.40ch02:43581253..43581537- go_terms:GO:0006869 functional_description:"Lipid transfer protein (AHRD V1 ***- Q42158_ARATH); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00001038g0005.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.33|1|1|3|0|71 NbS00001038g0006.1 protein AED:0.00 eAED:0.00 QI:250|1|1|1|1|1|2|112|289; (*GB) gi|225456495|ref|XP_002280924.1| (e_value=2e-46) PREDICTED: ethylene-responsive transcription factor ERF114-like [Vitis vinifera];; (*SWP) sp|Q9FH54|EF114_ARATH (e_value=2e-39) Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1;; (*TAIR) AT5G61890.1 (e_value=1e-40) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:24852639-24853744 REVERSE LENGTH=248;; (*ITAG) Solyc12g042210.1.1 (e_value=8e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:42707005-42708328 transcript_region:SL2.40ch12:42707005..42708328+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00001038g0002.1 protein AED:0.32 eAED:0.32 QI:0|0.85|0.8|0.93|1|1|15|0|543; (*GB) gi|356527466|ref|XP_003532331.1| (e_value=0.0) PREDICTED: protein BONZAI 1-like [Glycine max];; (*SWP) sp|Q941L3|BON1_ARATH (e_value=0.0) Protein BONZAI 1 OS=Arabidopsis thaliana GN=BON1 PE=1 SV=2;; (*TAIR) AT5G61910.4 (e_value=0.0) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24855908-24863729 REVERSE LENGTH=1346;; (*ITAG) Solyc03g118200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61188206-61198586 transcript_region:SL2.40ch03:61188206..61198586- go_terms:GO:0005544 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544 NbS00034294g0007.1 protein AED:0.02 eAED:0.02 QI:300|1|0.75|1|0.66|0.75|4|313|469; (*GB) gi|225460779|ref|XP_002274589.1| (e_value=4e-150) PREDICTED: uncharacterized protein LOC100267443 [Vitis vinifera];; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=6e-56) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=3e-125) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc11g012470.1.1 (e_value=2e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5302951-5305498 transcript_region:SL2.40ch11:5302951..5305498- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00034294g0003.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|534; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=0.0) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9M0M5|SCL13_ARATH (e_value=0.0) Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2;; (*TAIR) AT4G17230.1 (e_value=0.0) | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529;; (*ITAG) Solyc04g014830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:5064579-5066240 transcript_region:SL2.40ch04:5064579..5066240- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00015371g0005.1 protein AED:0.14 eAED:0.14 QI:12|0.33|0.25|0.75|0.66|0.5|4|0|328; (*GB) gi|225468729|ref|XP_002271512.1| (e_value=1e-114) PREDICTED: uncharacterized protein LOC100266157 [Vitis vinifera];; (*TAIR) AT5G14090.1 (e_value=6e-44) | Symbols: | unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:4547230-4549214 FORWARD LENGTH=358;; (*ITAG) Solyc05g015880.2.1 (e_value=3e-161) genomic_reference:SL2.40ch05 gene_region:12616663-12619235 transcript_region:SL2.40ch05:12616663..12619235- functional_description:"Genomic DNA chromosome 5 P1 clone MUA22 (AHRD V1 ***- Q9FMU1_ARATH)"; NbS00015304g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|1|1|12|0|889; (*GB) gi|350539537|ref|NP_001234176.1| (e_value=1e-159) PI-phospholipase C PLC5 [Solanum lycopersicum];; (*SWP) sp|Q8GV43|PLCD6_ARATH (e_value=1e-143) Phosphoinositide phospholipase C 6 OS=Arabidopsis thaliana GN=PLC6 PE=2 SV=2;; (*TAIR) AT2G40116.1 (e_value=9e-145) | Symbols: | Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613;; (*ITAG) Solyc03g096070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:51366833-51373415 transcript_region:SL2.40ch03:51366833..51373415- go_terms:GO:0004629 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (Phosphoinositide-specific phospholipase c) (AHRD V1 *-** O49950_SOLTU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0004629 NbS00015304g0011.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|0.5|0.66|3|0|157; (*GB) gi|224140423|ref|XP_002323582.1| (e_value=4e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|D4N500|DIOX1_PAPSO (e_value=2e-30) Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1;; (*TAIR) AT5G05600.1 (e_value=4e-57) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc03g096050.2.1 (e_value=4e-67) genomic_reference:SL2.40ch03 gene_region:51317291-51320454 transcript_region:SL2.40ch03:51317291..51320454+ go_terms:GO:0016706,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-* ACCO1_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0009815 NbS00015304g0010.1 protein AED:0.50 eAED:0.53 QI:0|1|0|1|1|0.5|2|0|71 NbS00015304g0014.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|62 NbS00051580g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|297814634|ref|XP_002875200.1| (e_value=5e-38) hypothetical protein ARALYDRAFT_484241 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G11810.1 (e_value=4e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03330.1); Has 141 Blast hits to 141 proteins in 21 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3727819-3728865 FORWARD LENGTH=348;; (*ITAG) Solyc04g005530.2.1 (e_value=7e-61) genomic_reference:SL2.40ch04 gene_region:352495-353967 transcript_region:SL2.40ch04:352495..353967- functional_description:"Unknown Protein (AHRD V1)"; NbS00051580g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.88|1|0.62|0.77|9|0|620; (*GB) gi|225462949|ref|XP_002268416.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At1g69420-like [Vitis vinifera];; (*SWP) sp|Q9C533|ZDHC1_ARATH (e_value=0.0) Probable S-acyltransferase At1g69420 OS=Arabidopsis thaliana GN=At1g69420 PE=2 SV=2;; (*TAIR) AT1G69420.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr1:26093690-26096736 FORWARD LENGTH=596;; (*ITAG) Solyc05g012790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5958825-5964747 transcript_region:SL2.40ch05:5958825..5964747+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00038099g0003.1 protein AED:0.00 eAED:0.00 QI:95|1|1|1|1|1|2|158|81; (*ITAG) Solyc10g074840.1.1 (e_value=7e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:57866678-57867705 transcript_region:SL2.40ch10:57866678..57867705- functional_description:"Unknown Protein (AHRD V1)"; NbS00010588g0003.1 protein AED:0.33 eAED:0.34 QI:0|0.5|0|1|1|1|3|0|508; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=2e-51) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q84W80|FBL42_ARATH (e_value=3e-20) F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2;; (*TAIR) AT3G03360.1 (e_value=2e-21) | Symbols: | F-box/RNI-like superfamily protein | chr3:795218-796918 FORWARD LENGTH=481;; (*ITAG) Solyc08g005320.2.1 (e_value=1e-128) genomic_reference:SL2.40ch08 gene_region:246373-250090 transcript_region:SL2.40ch08:246373..250090+ go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR006566 FBD-like "; GO:0004842 NbS00010588g0017.1 protein AED:0.31 eAED:0.34 QI:0|0.5|0.2|1|0|0.2|5|0|435; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=3e-43) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q84W80|FBL42_ARATH (e_value=5e-24) F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2;; (*TAIR) AT3G03360.1 (e_value=4e-25) | Symbols: | F-box/RNI-like superfamily protein | chr3:795218-796918 FORWARD LENGTH=481;; (*ITAG) Solyc08g015710.1.1 (e_value=2e-124) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:5202181-5204843 transcript_region:SL2.40ch08:5202181..5204843- go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00010588g0005.1 protein AED:0.55 eAED:0.55 QI:0|0|0.2|0.6|1|1|5|0|162; (*ITAG) Solyc08g005310.2.1 (e_value=3e-14) genomic_reference:SL2.40ch08 gene_region:235686-244594 transcript_region:SL2.40ch08:235686..244594+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00010588g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.66|1|0.5|0.66|3|125|344; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=3e-21) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q501G5|FB250_ARATH (e_value=3e-16) F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2 SV=1;; (*TAIR) AT5G03100.1 (e_value=2e-17) | Symbols: | F-box/RNI-like superfamily protein | chr5:726832-727980 FORWARD LENGTH=307;; (*ITAG) Solyc08g015710.1.1 (e_value=4e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:5202181-5204843 transcript_region:SL2.40ch08:5202181..5204843- go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00023087g0004.1 protein AED:0.31 eAED:0.31 QI:0|0|0.5|1|0|0|2|347|154; (*GB) gi|255539923|ref|XP_002511026.1| (e_value=9e-57) cyclin-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|O80513|CCU41_ARATH (e_value=4e-43) Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1;; (*TAIR) AT2G44740.1 (e_value=3e-44) | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-18443304 REVERSE LENGTH=202;; (*ITAG) Solyc01g089850.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:75337760-75340187 transcript_region:SL2.40ch01:75337760..75340187- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator Pho80 (AHRD V1 **** B6QI37_PENMQ); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00023087g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|140 NbS00014997g0006.1 protein AED:0.37 eAED:0.37 QI:179|0.8|1|1|0.6|0.66|6|185|195; (*GB) gi|4774163|dbj|BAA77508.1| (e_value=2e-95) F1-ATP synthase delta subunit [Ipomoea batatas];; (*SWP) sp|P22778|ATPO_IPOBA (e_value=5e-96) ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G13450.1 (e_value=2e-61) | Symbols: ATP5 | delta subunit of Mt ATP synthase | chr5:4310558-4311941 REVERSE LENGTH=238;; (*ITAG) Solyc01g087120.2.1 (e_value=6e-121) genomic_reference:SL2.40ch01 gene_region:73799914-73805436 transcript_region:SL2.40ch01:73799914..73805436+ go_terms:GO:0045261 functional_description:"F1-ATP synthase delta subunit (AHRD V1 ***- Q9SXX1_IPOBA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00015040g0006.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|0.5|0.66|3|0|551; (*GB) gi|225427155|ref|XP_002277531.1| (e_value=0.0) PREDICTED: (R)-mandelonitrile lyase-like [Vitis vinifera];; (*SWP) sp|Q9SSM2|MDLL_ARATH (e_value=0.0) (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1;; (*TAIR) AT1G73050.1 (e_value=0.0) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc03g123820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00015040g0002.1 protein AED:0.38 eAED:0.41 QI:0|0|0|0.5|1|1|4|0|104; (*GB) gi|297741557|emb|CBI32689.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46297|RS23_FRAAN (e_value=5e-22) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT3G09680.1 (e_value=3e-21) | Symbols: | Ribosomal protein S12/S23 family protein | chr3:2969197-2970291 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=1e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00039330g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|581; (*GB) gi|224111722|ref|XP_002315953.1| (e_value=5e-155) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=2e-117) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G25510.1 (e_value=8e-148) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:8959372-8960823 REVERSE LENGTH=483;; (*ITAG) Solyc05g009680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3876692-3878140 transcript_region:SL2.40ch05:3876692..3878140- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00050818g0001.1 protein AED:0.35 eAED:0.35 QI:0|0|0.5|1|1|1|2|0|156; (*GB) gi|294440434|gb|ADE74634.1| (e_value=3e-95) early responsive to dehydration 1 protein [Nicotiana tabacum];; (*SWP) sp|Q94AR4|CID2_ARATH (e_value=2e-16) Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1;; (*TAIR) AT2G41430.5 (e_value=1e-27) | Symbols: ERD15 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163;; (*ITAG) Solyc10g079820.1.1 (e_value=2e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60636659-60637440 transcript_region:SL2.40ch10:60636659..60637440+ functional_description:"Early response to dehydration 15-like protein (Fragment) (AHRD V1 **-- Q5MED0_PSEMZ); contains Interpro domain(s) IPR009818 Ataxin-2, C-terminal "; NbS00050818g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|367; (*GB) gi|133711806|gb|ABO36624.1| (e_value=3e-124) hypothetical protein LYC_68t000008 [Solanum lycopersicum];; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=5e-63) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=4e-64) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc10g079180.2.1 (e_value=6e-127) genomic_reference:SL2.40ch10 gene_region:60104390-60105346 transcript_region:SL2.40ch10:60104390..60105346- go_terms:GO:0003824 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00018272g0005.1 protein AED:0.10 eAED:0.10 QI:33|1|0.33|1|1|1|3|0|109; (*GB) gi|192910796|gb|ACF06506.1| (e_value=1e-53) RNA polymerase [Elaeis guineensis];; (*SWP) sp|Q54YW8|RPAB3_DICDI (e_value=3e-26) DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1;; (*TAIR) AT1G54250.1 (e_value=2e-47) | Symbols: ATRPABC16.5, NRPB8A, NRPE8A | RNA polymerase Rpb8 | chr1:20255210-20256335 FORWARD LENGTH=146;; (*ITAG) Solyc03g031690.2.1 (e_value=9e-73) genomic_reference:SL2.40ch03 gene_region:8431329-8435751 transcript_region:SL2.40ch03:8431329..8435751- go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 ***- B9EM78_SALSA); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515 NbS00018272g0008.1 protein AED:0.19 eAED:0.19 QI:151|1|1|1|0.75|0.6|5|169|343; (*GB) gi|188474277|gb|ACD49738.1| (e_value=3e-153) BURP domain-containing protein [Solanum tuberosum];; (*SWP) sp|Q08298|RD22_ARATH (e_value=2e-85) Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1;; (*TAIR) AT5G25610.1 (e_value=1e-86) | Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392;; (*ITAG) Solyc08g068150.2.1 (e_value=2e-148) genomic_reference:SL2.40ch08 gene_region:54447024-54449867 transcript_region:SL2.40ch08:54447024..54449867- functional_description:"BURP domain-containing protein (AHRD V1 **-- B2ZPK7_SOLLC); contains Interpro domain(s) IPR004873 BURP "; NbS00026473g0006.1 protein AED:0.26 eAED:0.27 QI:0|0.85|0.76|1|0.75|0.80|21|0|1144; (*GB) gi|296081171|emb|CBI18197.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=0.0) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G76850.1 (e_value=0.0) | Symbols: SEC5A | exocyst complex component sec5 | chr1:28848013-28854282 FORWARD LENGTH=1090;; (*ITAG) Solyc04g071350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55866523-55892059 transcript_region:SL2.40ch04:55866523..55892059+ functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q6PGY8_DANRE)"; NbS00058026g0008.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|181; (*GB) gi|225440510|ref|XP_002272651.1| (e_value=2e-68) PREDICTED: mitochondrial substrate carrier family protein B [Vitis vinifera];; (*SWP) sp|Q6NUK1|SCMC1_HUMAN (e_value=4e-19) Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2;; (*TAIR) AT3G53940.1 (e_value=1e-62) | Symbols: | Mitochondrial substrate carrier family protein | chr3:19971258-19973564 REVERSE LENGTH=365;; (*ITAG) Solyc09g011360.2.1 (e_value=5e-83) genomic_reference:SL2.40ch09 gene_region:4697445-4700991 transcript_region:SL2.40ch09:4697445..4700991- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10NJ7_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00058026g0001.1 protein AED:0.14 eAED:0.14 QI:293|1|1|1|0.5|0.4|5|397|503; (*GB) gi|297740294|emb|CBI30476.3| (e_value=6e-151) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZM8|BLH9_ARATH (e_value=5e-97) BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana GN=BLH9 PE=1 SV=1;; (*TAIR) AT5G02030.1 (e_value=4e-98) | Symbols: LSN, PNY, HB-6, BLR, RPL, BLH9, VAN | POX (plant homeobox) family protein | chr5:395754-398872 FORWARD LENGTH=575;; (*ITAG) Solyc09g011380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4709685-4715117 transcript_region:SL2.40ch09:4709685..4715117- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 9 (AHRD V1 *--- BLH9_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00008162g0002.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|357436671|ref|XP_003588611.1| (e_value=3e-24) Auxin-induced protein 6B [Medicago truncatula];; (*TAIR) AT4G31320.1 (e_value=2e-21) | Symbols: | SAUR-like auxin-responsive protein family | chr4:15193993-15194562 REVERSE LENGTH=189;; (*ITAG) Solyc03g124020.1.1 (e_value=7e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64779168-64779734 transcript_region:SL2.40ch03:64779168..64779734+ go_terms:GO:0005516 functional_description:"SAUR family protein (AHRD V1 ***- B9HK23_POPTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00008162g0010.1 protein AED:0.23 eAED:0.64 QI:0|0.16|0.28|0.85|0.83|0.85|7|84|510; (*GB) gi|255544500|ref|XP_002513311.1| (e_value=1e-175) splicing endonuclease positive effector sen1, putative [Ricinus communis];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=4e-59) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT1G16800.1 (e_value=2e-167) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:5745523-5755263 REVERSE LENGTH=2127;; (*ITAG) Solyc03g124010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64763157-64776914 transcript_region:SL2.40ch03:64763157..64776914+ functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY)"; NbS00008162g0009.1 protein AED:0.32 eAED:0.32 QI:0|0.92|0.86|1|0.78|0.8|15|810|450; (*GB) gi|118486611|gb|ABK95143.1| (e_value=6e-157) unknown [Populus trichocarpa];; (*TAIR) AT1G78915.1 (e_value=4e-129) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29667729-29671081 REVERSE LENGTH=385;; (*ITAG) Solyc03g124030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64780565-64800802 transcript_region:SL2.40ch03:64780565..64800802- go_terms:GO:0005488 functional_description:"TPR repeat protein (AHRD V1 *--- A0ZBH5_NODSP); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00038599g0001.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|1|1|5|0|899; (*GB) gi|224112162|ref|XP_002316103.1| (e_value=5e-141) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69360.1 (e_value=2e-80) | Symbols: | Plant protein of unknown function (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896;; (*ITAG) Solyc05g012640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5834062-5837811 transcript_region:SL2.40ch05:5834062..5837811- functional_description:"T7.1 protein (AHRD V1 *-*- Q9FZE6_ARATH); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00010383g0011.1 protein AED:0.00 eAED:0.00 QI:178|1|0.66|1|0|0|3|611|93; (*GB) gi|255578827|ref|XP_002530268.1| (e_value=1e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G65032.1 (e_value=2e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:24158895-24159170 REVERSE LENGTH=91;; (*ITAG) Solyc01g081120.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:72958906-72961480 transcript_region:SL2.40ch01:72958906..72961480- functional_description:"F16G16.3 protein (Fragment) (AHRD V1 ***- Q9SS56_ARATH)"; NbS00010383g0034.1 protein AED:0.12 eAED:0.26 QI:310|0.4|0.5|1|0.2|0.33|6|0|315; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-47) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=6e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00010383g0035.1 protein AED:0.28 eAED:0.28 QI:113|0.75|0.8|1|0|0.4|5|599|127; (*GB) gi|225434042|ref|XP_002274171.1| (e_value=7e-23) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q54YW8|RPAB3_DICDI (e_value=8e-16) DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1;; (*TAIR) AT3G59600.1 (e_value=9e-21) | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146;; (*ITAG) Solyc01g081150.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:72972619-72975564 transcript_region:SL2.40ch01:72972619..72975564- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 **** C3KGW8_ANOFI); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515,GO:0003899 NbS00010383g0036.1 protein AED:0.36 eAED:0.36 QI:0|0.8|0.66|0.83|0.6|0.83|6|393|178; (*GB) gi|225434042|ref|XP_002274171.1| (e_value=8e-28) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit rpabc3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q923G2|RPAB3_MOUSE (e_value=4e-17) DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=2 SV=3;; (*TAIR) AT3G59600.1 (e_value=8e-25) | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146;; (*ITAG) Solyc01g081150.2.1 (e_value=7e-45) genomic_reference:SL2.40ch01 gene_region:72972619-72975564 transcript_region:SL2.40ch01:72972619..72975564- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 **** C3KGW8_ANOFI); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515,GO:0003899 NbS00010383g0032.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.5|1|0.8|0.83|6|358|110; (*GB) gi|225463830|ref|XP_002264489.1| (e_value=6e-47) PREDICTED: uncharacterized protein LOC100248442 [Vitis vinifera];; (*TAIR) AT5G17610.1 (e_value=1e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5804011-5805045 FORWARD LENGTH=121;; (*ITAG) Solyc01g081200.2.1 (e_value=1e-63) genomic_reference:SL2.40ch01 gene_region:72996226-73000334 transcript_region:SL2.40ch01:72996226..73000334- functional_description:"Unknown Protein (AHRD V1)"; NbS00010383g0031.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|0.66|1|1|3|0|581; (*GB) gi|359489466|ref|XP_002266823.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g17580-like [Vitis vinifera];; (*SWP) sp|Q9LF66|Y5758_ARATH (e_value=6e-124) BTB/POZ domain-containing protein At5g17580 OS=Arabidopsis thaliana GN=At5g17580 PE=2 SV=1;; (*TAIR) AT5G17580.1 (e_value=5e-125) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:5795302-5797031 FORWARD LENGTH=548;; (*ITAG) Solyc06g073480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41679362-41681452 transcript_region:SL2.40ch06:41679362..41681452+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L161_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00010383g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0.66|1|1|1|3|593|148; (*GB) gi|255566026|ref|XP_002524001.1| (e_value=4e-77) calcium ion binding protein, putative [Ricinus communis];; (*TAIR) AT1G64850.1 (e_value=1e-69) | Symbols: | Calcium-binding EF hand family protein | chr1:24096548-24097574 REVERSE LENGTH=162;; (*ITAG) Solyc01g081190.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:72994229-72995987 transcript_region:SL2.40ch01:72994229..72995987+ go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 **** D7KZ13_ARALY); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00010383g0003.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|99 NbS00022543g0006.1 protein AED:0.21 eAED:0.21 QI:509|0.87|0.88|1|0.62|0.66|9|316|401; (*GB) gi|350535469|ref|NP_001234452.1| (e_value=8e-168) APETALA2-like protein [Solanum lycopersicum];; (*SWP) sp|P47927|AP2_ARATH (e_value=9e-125) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=7e-126) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc03g044300.2.1 (e_value=2e-170) genomic_reference:SL2.40ch03 gene_region:12742062-12746690 transcript_region:SL2.40ch03:12742062..12746690+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00012024g0012.1 protein AED:0.19 eAED:0.19 QI:316|0.8|0.83|1|0.2|0.5|6|351|336; (*GB) gi|359481589|ref|XP_002282804.2| (e_value=2e-176) PREDICTED: uncharacterized protein LOC100263058 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=6e-161) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc09g009530.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2936861-2939724 transcript_region:SL2.40ch09:2936861..2939724- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00012024g0008.1 protein AED:0.20 eAED:0.20 QI:411|0.77|0.7|1|0.66|0.6|10|285|745; (*GB) gi|359481589|ref|XP_002282804.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263058 [Vitis vinifera];; (*TAIR) AT3G48410.1 (e_value=4e-168) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:17925786-17928100 REVERSE LENGTH=385;; (*ITAG) Solyc09g009500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2918891-2924458 transcript_region:SL2.40ch09:2918891..2924458- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00024955g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|123 NbS00024955g0007.1 protein AED:0.49 eAED:0.51 QI:0|0|0|0.33|0.5|0.33|3|0|225 NbS00044271g0001.1 protein AED:0.35 eAED:0.37 QI:0|0|0.5|1|1|1|2|728|96; (*GB) gi|147767977|emb|CAN60218.1| (e_value=2e-22) hypothetical protein VITISV_006612 [Vitis vinifera];; (*TAIR) AT3G42170.1 (e_value=2e-15) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc10g007810.2.1 (e_value=5e-46) genomic_reference:SL2.40ch10 gene_region:2028853-2031189 transcript_region:SL2.40ch10:2028853..2031189- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00061002g0003.1 protein AED:0.21 eAED:0.21 QI:170|1|1|1|1|1|2|598|255; (*GB) gi|37572445|dbj|BAC98492.1| (e_value=4e-90) AG-motif binding protein-2 [Nicotiana tabacum];; (*SWP) sp|Q8LAU9|GATA1_ARATH (e_value=1e-41) GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2;; (*TAIR) AT3G24050.1 (e_value=8e-43) | Symbols: GATA1 | GATA transcription factor 1 | chr3:8686060-8687462 FORWARD LENGTH=274;; (*ITAG) Solyc05g053500.2.1 (e_value=6e-100) genomic_reference:SL2.40ch05 gene_region:62725404-62728002 transcript_region:SL2.40ch05:62725404..62728002+ go_terms:GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00001496g0009.1 protein AED:0.16 eAED:0.16 QI:26|1|0.66|1|0.4|0.33|6|0|302; (*GB) gi|296082445|emb|CBI21450.3| (e_value=2e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G39810.1 (e_value=2e-111) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr4:18474608-18475735 REVERSE LENGTH=255;; (*ITAG) Solyc04g054720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52241988-52243313 transcript_region:SL2.40ch04:52241988..52243313+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00001496g0006.1 protein AED:0.20 eAED:0.20 QI:159|1|1|1|0.8|0.72|11|232|480; (*GB) gi|350540010|ref|NP_001234609.1| (e_value=0.0) prephenate aminotransferase [Solanum lycopersicum];; (*SWP) sp|Q9SIE1|PAT_ARATH (e_value=0.0) Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Arabidopsis thaliana GN=PAT PE=1 SV=2;; (*TAIR) AT2G22250.1 (e_value=0.0) | Symbols: ATAAT, AAT, MEE17 | aspartate aminotransferase | chr2:9458011-9460028 REVERSE LENGTH=428;; (*ITAG) Solyc04g054710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52233788-52240192 transcript_region:SL2.40ch04:52233788..52240192+ go_terms:GO:0004069,GO:0042803 functional_description:"Aspartate aminotransferase (AHRD V1 **** B6TK79_MAIZE); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004069,GO:0042803 NbS00054741g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.66|1|0|0|3|448|68 NbS00011113g0002.1 protein AED:0.16 eAED:0.29 QI:0|0|0|1|1|1|3|0|233; (*GB) gi|224152016|ref|XP_002337181.1| (e_value=7e-84) predicted protein [Populus trichocarpa];; (*TAIR) AT4G08950.1 (e_value=1e-80) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=4e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00011113g0005.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|1|1|2|0|294; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=0.0) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=4e-132) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=2e-180) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00002001g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|194475604|gb|ACF74549.1| (e_value=0.0) RAV [Nicotiana tabacum];; (*SWP) sp|Q9ZWM9|RAV1_ARATH (e_value=2e-140) AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1;; (*TAIR) AT1G13260.1 (e_value=1e-141) | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542386-4543420 FORWARD LENGTH=344;; (*ITAG) Solyc05g009790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3987084-3988271 transcript_region:SL2.40ch05:3987084..3988271- go_terms:GO:0003677,GO:0016564 functional_description:"Transcription factor (AHRD V1 *-** D6MKM9_9ASPA); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00009747g0002.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|538|682; (*GB) gi|356527151|ref|XP_003532176.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100813702 [Glycine max];; (*TAIR) AT5G55670.2 (e_value=4e-47) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22544669-22546801 REVERSE LENGTH=585;; (*ITAG) Solyc07g065510.2.1 (e_value=2e-95) genomic_reference:SL2.40ch07 gene_region:64458536-64462192 transcript_region:SL2.40ch07:64458536..64462192- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA binding protein (AHRD V1 *-*- B7SDF0_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00009747g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|0|0.5|2|0|235; (*GB) gi|255580369|ref|XP_002531012.1| (e_value=4e-70) ccaat-binding transcription factor subunit A, putative [Ricinus communis];; (*SWP) sp|O23310|NFYB3_ARATH (e_value=8e-71) Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1;; (*TAIR) AT4G14540.1 (e_value=6e-72) | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161;; (*ITAG) Solyc07g065500.1.1 (e_value=5e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64453920-64454468 transcript_region:SL2.40ch07:64453920..64454468- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00009747g0010.1 protein AED:0.29 eAED:0.29 QI:239|0.90|0.83|1|0.90|0.83|12|335|671; (*GB) gi|225461906|ref|XP_002266659.1| (e_value=3e-76) PREDICTED: uncharacterized protein LOC100249691 [Vitis vinifera];; (*SWP) sp|Q6AXS3|DEK_RAT (e_value=3e-13) Protein DEK OS=Rattus norvegicus GN=Dek PE=2 SV=1;; (*TAIR) AT5G55660.1 (e_value=1e-55) | Symbols: | DEK domain-containing chromatin associated protein | chr5:22539375-22543142 FORWARD LENGTH=778;; (*ITAG) Solyc07g065490.2.1 (e_value=7e-96) genomic_reference:SL2.40ch07 gene_region:64446017-64453329 transcript_region:SL2.40ch07:64446017..64453329+ functional_description:"Dek protein (AHRD V1 *--- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00008501g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.63|0.75|1|0.90|0.83|12|8|440; (*GB) gi|162461247|ref|NP_001105215.1| (e_value=8e-110) nucleosome/chromatin assembly factor group A [Zea mays];; (*SWP) sp|O59797|YCO6_SCHPO (e_value=1e-33) Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1;; (*TAIR) AT4G26110.2 (e_value=9e-106) | Symbols: NAP1;1 | nucleosome assembly protein1;1 | chr4:13232712-13235060 FORWARD LENGTH=359;; (*ITAG) Solyc06g062690.2.1 (e_value=4e-95) genomic_reference:SL2.40ch06 gene_region:35958537-35962580 transcript_region:SL2.40ch06:35958537..35962580- go_terms:GO:0003677 functional_description:"Nucleosome assembly protein 1-like protein 4 (AHRD V1 ***- Q70Z16_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0003677 NbS00008501g0015.1 protein AED:0.16 eAED:0.16 QI:69|1|0.91|1|0.72|0.58|12|209|408; (*GB) gi|350538543|ref|NP_001233836.1| (e_value=0.0) succinic semialdehyde reductase isofom2 [Solanum lycopersicum];; (*SWP) sp|Q5ZLS7|GLYR1_CHICK (e_value=3e-78) Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1;; (*TAIR) AT1G17650.1 (e_value=2e-165) | Symbols: GLYR2, GR2 | glyoxylate reductase 2 | chr1:6069594-6071964 REVERSE LENGTH=358;; (*ITAG) Solyc03g121720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63848472-63854092 transcript_region:SL2.40ch03:63848472..63854092+ go_terms:GO:0003858,GO:0030267 functional_description:"2-hydroxy-3-oxopropionate reductase (AHRD V1 **-* B6T4X5_MAIZE); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0003858,GO:0030267 NbS00008501g0017.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0.33|3|0|239; (*GB) gi|385282634|gb|AFI57904.1| (e_value=4e-82) cell wall invertase 1 [Prunus persica];; (*SWP) sp|Q70XE6|6FEH_BETVU (e_value=1e-67) Fructan 6-exohydrolase OS=Beta vulgaris GN=6-FEH PE=1 SV=1;; (*TAIR) AT3G13790.2 (e_value=1e-68) | Symbols: ATBFRUCT1 | Glycosyl hydrolases family 32 protein | chr3:4533084-4535831 REVERSE LENGTH=581;; (*ITAG) Solyc03g121680.1.1 (e_value=2e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:63829454-63831980 transcript_region:SL2.40ch03:63829454..63831980+ go_terms:GO:0004564,GO:0031219 functional_description:"Beta-fructofuranosidase (AHRD V1 **-* Q7XA49_SOYBN); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004564,GO:0031219 NbS00008501g0016.1 protein AED:0.35 eAED:0.36 QI:0|1|0|1|1|1|2|0|170; (*GB) gi|298239758|gb|ADI70684.1| (e_value=2e-103) cell wall invertase INV5, partial [Nicotiana tabacum];; (*SWP) sp|Q43866|INV1_ARATH (e_value=6e-57) Beta-fructofuranosidase, insoluble isoenzyme CWINV1 OS=Arabidopsis thaliana GN=CWINV1 PE=1 SV=1;; (*TAIR) AT3G13790.1 (e_value=4e-58) | Symbols: ATCWINV1, ATBFRUCT1 | Glycosyl hydrolases family 32 protein | chr3:4533084-4535831 REVERSE LENGTH=584;; (*ITAG) Solyc03g121680.1.1 (e_value=1e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:63829454-63831980 transcript_region:SL2.40ch03:63829454..63831980+ go_terms:GO:0004564,GO:0031219 functional_description:"Beta-fructofuranosidase (AHRD V1 **-* Q7XA49_SOYBN); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004564,GO:0031219 NbS00046641g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|350535412|ref|NP_001234193.1| (e_value=3e-64) MFP1 attachment factor 1 [Solanum lycopersicum];; (*SWP) sp|Q9M7N6|MAF1_SOLLC (e_value=8e-66) MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1;; (*TAIR) AT1G47200.1 (e_value=5e-41) | Symbols: WPP2 | WPP domain protein 2 | chr1:17298181-17298723 REVERSE LENGTH=180;; (*ITAG) Solyc04g078380.1.1 (e_value=5e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60707481-60707939 transcript_region:SL2.40ch04:60707481..60707939+ go_terms:GO:0005515 functional_description:"MFP1 attachment factor 1 (AHRD V1 **-- Q9M7N4_SOYBN)"; GO:0005515 NbS00001069g0003.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|2|0|126; (*GB) gi|225426596|ref|XP_002280209.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100242761 [Vitis vinifera];; (*TAIR) AT4G24130.1 (e_value=7e-41) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc08g083090.1.1 (e_value=1e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62825827-62826291 transcript_region:SL2.40ch08:62825827..62826291+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00007322g0001.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|0|0|2|203|136; (*GB) gi|300681467|emb|CBH32561.1| (e_value=8e-79) histone H3, expressed [Triticum aestivum];; (*SWP) sp|P68428|H32_WHEAT (e_value=3e-80) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=2e-81) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00007322g0010.1 protein AED:0.24 eAED:0.24 QI:159|1|1|1|0.25|0.4|5|341|181; (*GB) gi|10799832|emb|CAC12883.1| (e_value=8e-121) ribosomal protein L11-like [Nicotiana tabacum];; (*SWP) sp|P42795|RL111_ARATH (e_value=6e-119) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2;; (*TAIR) AT2G42740.1 (e_value=5e-120) | Symbols: RPL16A | ribosomal protein large subunit 16A | chr2:17791794-17792946 FORWARD LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=6e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00007322g0002.1 protein AED:0.27 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|304; (*ITAG) Solyc01g073980.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00059664g0011.1 protein AED:0.20 eAED:0.25 QI:0|0.4|0.5|0.83|0.4|0.5|6|303|280; (*ITAG) Solyc02g005360.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00059664g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0.5|0.66|3|0|511; (*GB) gi|224126859|ref|XP_002319944.1| (e_value=0.0) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9ZR09|FDL25_ARATH (e_value=3e-135) Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana GN=At4g03220 PE=4 SV=1;; (*TAIR) AT4G03220.1 (e_value=2e-136) | Symbols: | Protein with RNI-like/FBD-like domains | chr4:1417472-1419148 FORWARD LENGTH=498;; (*ITAG) Solyc07g053040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58818029-58820449 transcript_region:SL2.40ch07:58818029..58820449- functional_description:"F-box family protein (AHRD V1 ***- B9I6J7_POPTR); contains Interpro domain(s) IPR013596 FBD "; NbS00059664g0010.1 protein AED:0.45 eAED:0.73 QI:0|0|0|1|0|0|4|0|159; (*SWP) sp|P12222|YCF1_TOBAC (e_value=6e-13) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2; NbS00059664g0009.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|0|0|3|0|128; (*GB) gi|290489044|gb|ADD30906.1| (e_value=1e-27) putative RF1 protein [Ilex cornuta];; (*SWP) sp|Q2MI42|YCF1_SOLLC (e_value=5e-27) Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=4e-21) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc12g036550.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31729071-31729508 transcript_region:SL2.40ch12:31729071..31729508+ functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- D7P347_SYZCU); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00047782g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.92|0.85|1|0.84|0.78|14|160|690; (*GB) gi|350537769|ref|NP_001234565.1| (e_value=0.0) sulfate transporter 1 [Solanum lycopersicum];; (*SWP) sp|Q9FEP7|SUT13_ARATH (e_value=0.0) Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=0.0) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc10g047170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35425026-35428142 transcript_region:SL2.40ch10:35425026..35428142- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00047782g0007.1 protein AED:0.03 eAED:0.03 QI:26|1|1|1|1|1|3|637|191; (*GB) gi|49204581|dbj|BAD24657.1| (e_value=2e-45) xylogen protein 1 [Zinnia elegans];; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=3e-37) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT2G13820.1 (e_value=2e-38) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:5774295-5776279 REVERSE LENGTH=169;; (*ITAG) Solyc01g105010.2.1 (e_value=5e-64) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00047782g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|378; (*GB) gi|225447887|ref|XP_002273325.1| (e_value=1e-136) PREDICTED: uncharacterized protein LOC100257164 [Vitis vinifera];; (*TAIR) AT5G64090.1 (e_value=1e-121) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25648069-25649415 FORWARD LENGTH=448;; (*ITAG) Solyc10g047210.1.1 (e_value=3e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35670364-35670867 transcript_region:SL2.40ch10:35670364..35670867+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018619 Hyccin "; NbS00054942g0003.1 protein AED:0.31 eAED:0.31 QI:254|1|1|1|1|1|6|256|211; (*GB) gi|16755592|gb|AAL28022.1| (e_value=2e-142) small GTPase Rab2 [Nicotiana tabacum];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=1e-140) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=8e-142) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc10g007700.2.1 (e_value=3e-144) genomic_reference:SL2.40ch10 gene_region:1953681-1958548 transcript_region:SL2.40ch10:1953681..1958548- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00030464g0004.1 protein AED:0.25 eAED:0.25 QI:160|0.93|0.87|1|0.86|0.81|16|363|516; (*GB) gi|365222878|gb|AEW69791.1| (e_value=0.0) Hop-interacting protein THI028 [Solanum lycopersicum];; (*SWP) sp|Q8LBH2|CAP8_ARATH (e_value=0.0) Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2;; (*TAIR) AT2G01600.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr2:268975-272356 FORWARD LENGTH=571;; (*ITAG) Solyc04g007860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1532848-1539431 transcript_region:SL2.40ch04:1532848..1539431+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00011898g0006.1 protein AED:0.13 eAED:0.13 QI:443|0.6|0.5|1|0.2|0.16|6|408|247; (*GB) gi|147834515|emb|CAN72000.1| (e_value=6e-54) hypothetical protein VITISV_032712 [Vitis vinifera];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=8e-51) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=6e-52) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc12g040870.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40886048-40887708 transcript_region:SL2.40ch12:40886048..40887708- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 ***- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00038888g0007.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|78191400|gb|ABB29921.1| (e_value=8e-57) unknown [Solanum tuberosum];; (*SWP) sp|O50003|RL12_PRUAR (e_value=3e-54) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=7e-54) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc11g069440.1.1 (e_value=9e-60) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51106221-51106721 transcript_region:SL2.40ch11:51106221..51106721- go_terms:GO:0005840 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005840 NbS00038888g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|224139046|ref|XP_002326754.1| (e_value=4e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31940.1 (e_value=3e-31) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=1e-48) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00038888g0009.1 protein AED:0.24 eAED:0.24 QI:180|0.92|0.92|1|0.69|0.78|14|334|478; (*GB) gi|225448900|ref|XP_002264719.1| (e_value=0.0) PREDICTED: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=1e-143) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT5G04420.3 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:1246867-1249455 REVERSE LENGTH=514;; (*ITAG) Solyc11g007960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2181483-2185661 transcript_region:SL2.40ch11:2181483..2185661+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 3 (AHRD V1 **-- D3PFJ0_9MAXI); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00040528g0004.1 protein AED:0.07 eAED:0.07 QI:304|1|1|1|1|1|6|467|417; (*GB) gi|224095800|ref|XP_002310485.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q964D8|BUP1_DICDI (e_value=1e-177) Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1;; (*TAIR) AT5G64370.1 (e_value=0.0) | Symbols: BETA-UP, PYD3 | beta-ureidopropionase | chr5:25739264-25741031 FORWARD LENGTH=408;; (*ITAG) Solyc10g047630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:36972309-36976176 transcript_region:SL2.40ch10:36972309..36976176+ go_terms:GO:0003837 functional_description:"Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (AHRD V1 **-- C7PTC3_CHIPD); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0003837 NbS00042314g0003.1 protein AED:0.45 eAED:0.45 QI:0|1|0.66|1|0.5|0.66|3|0|112; (*GB) gi|225452332|ref|XP_002273651.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100262706 [Vitis vinifera];; (*TAIR) AT5G40500.1 (e_value=5e-42) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16227984-16228518 FORWARD LENGTH=123;; (*ITAG) Solyc02g093350.2.1 (e_value=4e-65) genomic_reference:SL2.40ch02 gene_region:48823830-48828106 transcript_region:SL2.40ch02:48823830..48828106+ functional_description:"Homology to unknown gene (AHRD V1 *-*- Q00ZA5_OSTTA)"; NbS00016147g0004.1 protein AED:0.13 eAED:0.13 QI:106|1|0.85|1|1|1|7|0|431; (*GB) gi|225449184|ref|XP_002278923.1| (e_value=3e-180) PREDICTED: uncharacterized protein LOC100240981 [Vitis vinifera];; (*TAIR) AT5G13610.1 (e_value=2e-150) | Symbols: | Protein of unknown function (DUF155) | chr5:4383073-4384808 FORWARD LENGTH=402;; (*ITAG) Solyc04g049850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42827134-42836304 transcript_region:SL2.40ch04:42827134..42836304+ go_terms:GO:0005975 functional_description:"Uncharacterized conserved protein (AHRD V1 *--- Q2S8S5_HAHCH); contains Interpro domain(s) IPR003734 Protein of unknown function DUF155 "; GO:0005975 NbS00032342g0003.1 protein AED:0.23 eAED:0.23 QI:329|0.91|0.95|1|0.82|0.83|24|203|919; (*GB) gi|147789985|emb|CAN59846.1| (e_value=0.0) hypothetical protein VITISV_004513 [Vitis vinifera];; (*SWP) sp|Q9C827|COB22_ARATH (e_value=0.0) Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1;; (*TAIR) AT1G52360.1 (e_value=0.0) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc12g043000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44043014-44056386 transcript_region:SL2.40ch12:44043014..44056386- go_terms:GO:0030117 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- Q0CXS2_ASPTN); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0030117 NbS00023023g0010.1 protein AED:0.18 eAED:0.24 QI:0|0.85|0.5|1|0.28|0.5|8|0|326; (*GB) gi|357487269|ref|XP_003613922.1| (e_value=2e-94) Notum-like protein [Medicago truncatula];; (*SWP) sp|Q6P988|NOTUM_HUMAN (e_value=6e-20) Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=1e-90) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc12g019440.1.1 (e_value=2e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:10282504-10286033 transcript_region:SL2.40ch12:10282504..10286033+ functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; NbS00019845g0009.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|1|1|2|0|235; (*GB) gi|225442885|ref|XP_002263563.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100244079 [Vitis vinifera];; (*TAIR) AT1G80450.1 (e_value=2e-20) | Symbols: | VQ motif-containing protein | chr1:30244155-30244688 REVERSE LENGTH=177;; (*ITAG) Solyc03g117500.1.1 (e_value=6e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60698445-60698951 transcript_region:SL2.40ch03:60698445..60698951+ functional_description:"VQ motif-containing protein (AHRD V1 ***- D7KX58_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00037440g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|387; (*GB) gi|357528933|gb|AET80687.1| (e_value=4e-142) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=3e-29) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=8e-47) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g010980.1.1 (e_value=3e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3842393-3843730 transcript_region:SL2.40ch12:3842393..3843730- go_terms:GO:0016747 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X7_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00022726g0002.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|65 NbS00022726g0003.1 protein AED:0.19 eAED:0.24 QI:8|-1|0|1|-1|0|1|0|199; (*GB) gi|385139871|gb|AFI41909.1| (e_value=8e-47) putative transcription factor [Petunia x hybrida];; (*SWP) sp|Q9SBV6|CYCLD_ANTML (e_value=2e-23) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1;; (*TAIR) AT1G68800.1 (e_value=2e-23) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc06g069240.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39396681-39398027 transcript_region:SL2.40ch06:39396681..39398027+ functional_description:"Teosinte-branched-like protein (Fragment) (AHRD V1 *-*- Q9FNU7_POPTR); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00025112g0002.1 protein AED:0.34 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|109; (*ITAG) Solyc11g069980.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00001620g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|356533511|ref|XP_003535307.1| (e_value=3e-19) PREDICTED: uncharacterized protein LOC100787526 [Glycine max];; (*ITAG) Solyc01g102420.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83003378-83003704 transcript_region:SL2.40ch01:83003378..83003704+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029599g0004.1 protein AED:0.01 eAED:0.01 QI:328|1|1|1|1|1|3|250|159; (*GB) gi|147790626|emb|CAN59826.1| (e_value=6e-41) hypothetical protein VITISV_016657 [Vitis vinifera];; (*TAIR) AT2G44300.1 (e_value=2e-40) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18307468-18308286 REVERSE LENGTH=204;; (*ITAG) Solyc01g073680.2.1 (e_value=2e-60) genomic_reference:SL2.40ch01 gene_region:70294954-70296553 transcript_region:SL2.40ch01:70294954..70296553- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- C6TMC6_SOYBN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00031992g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|605; (*GB) gi|225470922|ref|XP_002264409.1| (e_value=0.0) PREDICTED: transcription factor bHLH13 [Vitis vinifera];; (*SWP) sp|Q9LNJ5|BH013_ARATH (e_value=0.0) Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1;; (*TAIR) AT1G01260.3 (e_value=0.0) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590;; (*ITAG) Solyc01g096050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78903296-78905572 transcript_region:SL2.40ch01:78903296..78905572- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00024556g0004.1 protein AED:0.03 eAED:0.07 QI:56|0|0|0.66|1|1|3|0|768; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|O82491|SPT16_ARATH (e_value=0.0) FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82651948-82655945 transcript_region:SL2.40ch01:82651948..82655945- go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00007021g0008.1 protein AED:0.39 eAED:0.41 QI:3|1|0.66|1|0.5|0.66|3|340|90; (*GB) gi|255569209|ref|XP_002525573.1| (e_value=1e-43) Exportin-7, putative [Ricinus communis];; (*SWP) sp|Q704U0|XPO7A_XENLA (e_value=1e-26) Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1;; (*TAIR) AT5G06120.2 (e_value=1e-44) | Symbols: | ARM repeat superfamily protein | chr5:1845309-1852601 FORWARD LENGTH=1052;; (*ITAG) Solyc01g056520.2.1 (e_value=1e-54) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00007021g0116.1 protein AED:0.24 eAED:0.24 QI:0|0.85|0.62|1|0.85|0.87|8|0|270 NbS00007021g0115.1 protein AED:0.26 eAED:0.34 QI:0|0|0.33|1|1|1|3|428|90 NbS00029772g0006.1 protein AED:0.16 eAED:0.19 QI:252|0.5|0.57|0.85|0.5|0.42|7|0|1124; (*GB) gi|147790037|emb|CAN60525.1| (e_value=0.0) hypothetical protein VITISV_000522 [Vitis vinifera];; (*SWP) sp|Q0WSY2|FPP4_ARATH (e_value=0.0) Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1;; (*TAIR) AT1G19835.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF869) | chr1:6856212-6859513 REVERSE LENGTH=982;; (*ITAG) Solyc04g081260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62875381-62880736 transcript_region:SL2.40ch04:62875381..62880736+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00013051g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.42|1|1|1|7|0|964; (*GB) gi|147856912|emb|CAN80761.1| (e_value=0.0) hypothetical protein VITISV_014604 [Vitis vinifera];; (*TAIR) AT5G48390.1 (e_value=0.0) | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19612078-19615363 FORWARD LENGTH=936;; (*ITAG) Solyc09g042760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:30101647-30105131 transcript_region:SL2.40ch09:30101647..30105131+ functional_description:"ZIP4/SPO22 (AHRD V1 **-- A5Y6I6_ARATH); contains Interpro domain(s) IPR013940 Meiosis specific protein SPO22 "; NbS00013051g0008.1 protein AED:0.27 eAED:0.29 QI:11|1|0.33|1|1|0.66|3|0|569; (*GB) gi|82621112|gb|ABB86244.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-25) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc06g007640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1647012-1649536 transcript_region:SL2.40ch06:1647012..1649536- functional_description:"FRIGIDA-LIKE 2 (AHRD V1 *-*- A0SWL0_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00013051g0118.1 protein AED:0.19 eAED:0.19 QI:232|1|1|1|0.83|0.92|13|2216|397 NbS00013051g0117.1 protein AED:0.32 eAED:0.33 QI:709|0.42|0.5|0.87|0.42|0.37|8|0|257 NbS00013051g0121.1 protein AED:0.38 eAED:0.38 QI:0|0.25|0.4|1|0.75|0.6|5|284|447 NbS00013051g0120.1 protein AED:0.31 eAED:0.31 QI:0|0.7|0.45|0.81|1|0.90|11|0|289 NbS00013051g0119.1 protein AED:0.35 eAED:0.39 QI:412|1|0.88|1|0.62|0.66|9|0|319 NbS00000554g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|15235952|ref|NP_194296.1| (e_value=1e-59) PPPDE putative thiol peptidase family protein [Arabidopsis thaliana];; (*SWP) sp|Q5PQ09|PPDE1_XENLA (e_value=3e-15) Desumoylating isopeptidase 2 OS=Xenopus laevis GN=pppde1 PE=2 SV=1;; (*TAIR) AT4G25660.1 (e_value=2e-62) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:13083677-13084989 FORWARD LENGTH=255;; (*ITAG) Solyc02g082060.1.1 (e_value=3e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40374340-40374981 transcript_region:SL2.40ch02:40374340..40374981- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00000554g0116.1 protein AED:0.13 eAED:0.14 QI:0|1|0.71|1|0.66|1|7|0|1048 NbS00000554g0114.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|1|1|3|0|306 NbS00000554g0112.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|1|1|3|0|193 NbC24940971g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|0|0|2|0|67; (*ITAG) Solyc04g008370.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2012438-2014971 transcript_region:SL2.40ch04:2012438..2014971+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0019199,GO:0004674 NbS00029815g0004.1 protein AED:0.17 eAED:0.18 QI:0|0.8|0.5|1|1|1|6|0|306; (*GB) gi|224086078|ref|XP_002307806.1| (e_value=2e-148) predicted protein [Populus trichocarpa];; (*SWP) sp|P12859|G3PB_PEA (e_value=5e-148) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2;; (*TAIR) AT1G42970.1 (e_value=4e-145) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc04g082630.2.1 (e_value=4e-153) genomic_reference:SL2.40ch04 gene_region:63844019-63847151 transcript_region:SL2.40ch04:63844019..63847151- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 **** B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00007341g0013.1 protein AED:0.16 eAED:0.16 QI:107|1|1|1|1|1|2|147|225; (*GB) gi|317106610|dbj|BAJ53117.1| (e_value=6e-101) JHL07K02.7 [Jatropha curcas];; (*SWP) sp|Q67YC9|Y4141_ARATH (e_value=1e-83) Uncharacterized protein At4g14100 OS=Arabidopsis thaliana GN=At4g14100 PE=2 SV=1;; (*TAIR) AT3G23760.1 (e_value=9e-88) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:8562965-8564640 REVERSE LENGTH=194;; (*ITAG) Solyc03g118120.2.1 (e_value=3e-123) genomic_reference:SL2.40ch03 gene_region:61132331-61133501 transcript_region:SL2.40ch03:61132331..61133501+ go_terms:GO:0016757 functional_description:"Transferase transferring glycosyl groups (AHRD V1 **-* D7MH74_ARALY)"; GO:0016757 NbS00007341g0015.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|0|313; (*GB) gi|225447731|ref|XP_002277858.1| (e_value=8e-164) PREDICTED: (+)-neomenthol dehydrogenase [Vitis vinifera];; (*SWP) sp|Q28960|CBR1_PIG (e_value=3e-63) Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3;; (*TAIR) AT5G51030.1 (e_value=9e-163) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314;; (*ITAG) Solyc03g118100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61125398-61127888 transcript_region:SL2.40ch03:61125398..61127888- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 *-*- DHRS7_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00007341g0016.1 protein AED:0.16 eAED:0.16 QI:311|1|1|1|0.5|0.4|5|271|161; (*GB) gi|118485870|gb|ABK94782.1| (e_value=2e-62) unknown [Populus trichocarpa];; (*TAIR) AT5G51010.1 (e_value=1e-54) | Symbols: | Rubredoxin-like superfamily protein | chr5:20744615-20745344 FORWARD LENGTH=154;; (*ITAG) Solyc03g118130.2.1 (e_value=4e-73) genomic_reference:SL2.40ch03 gene_region:61134543-61136309 transcript_region:SL2.40ch03:61134543..61136309- go_terms:GO:0046872 functional_description:"Rubredoxin-like protein (AHRD V1 *--- A8JGB1_CHLRE); contains Interpro domain(s) IPR004039 Rubredoxin-type Fe(Cys)4 protein "; GO:0046872 NbS00007341g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.33|0.25|0.75|1|1|4|0|106; (*GB) gi|296088155|emb|CBI35625.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G51040.3 (e_value=5e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631). | chr5:20750700-20751790 FORWARD LENGTH=197;; (*ITAG) Solyc03g118110.2.1 (e_value=8e-54) genomic_reference:SL2.40ch03 gene_region:61127336-61132194 transcript_region:SL2.40ch03:61127336..61132194+ functional_description:"Succinate dehydrogenase assembly factor 2, mitochondrial (AHRD V1 *--- SDHF2_CAEBR); contains Interpro domain(s) IPR005631 Protein of unknown function DUF339 "; NbS00007341g0014.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.25|1|0.66|0.75|4|0|498; (*GB) gi|225456523|ref|XP_002284731.1| (e_value=0.0) PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Vitis vinifera];; (*SWP) sp|Q66L49|SCMC1_DANRE (e_value=4e-97) Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1;; (*TAIR) AT5G51050.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:20753381-20755714 FORWARD LENGTH=487;; (*ITAG) Solyc03g118090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61114407-61118294 transcript_region:SL2.40ch03:61114407..61118294- go_terms:GO:0005509 functional_description:"Calcium-binding mitochondrial carrier protein SCaMC-1 (AHRD V1 **** B5X2X8_SALSA); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005509 NbS00046882g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.42|1|0.33|0.42|7|332|415; (*GB) gi|255555467|ref|XP_002518770.1| (e_value=7e-167) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|Q9ZQR3|Y2451_ARATH (e_value=2e-31) Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1;; (*TAIR) AT3G19230.1 (e_value=1e-140) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6661088-6663519 REVERSE LENGTH=519;; (*ITAG) Solyc01g108270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87389527-87393072 transcript_region:SL2.40ch01:87389527..87393072+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00046882g0007.1 protein AED:0.13 eAED:0.13 QI:125|0.5|0|1|0.5|0.33|3|0|339; (*GB) gi|357475403|ref|XP_003607987.1| (e_value=8e-103) Calmodulin-like protein [Medicago truncatula];; (*SWP) sp|Q9ZQE6|CML1_ARATH (e_value=3e-60) Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1;; (*TAIR) AT2G15680.1 (e_value=2e-61) | Symbols: | Calcium-binding EF-hand family protein | chr2:6831024-6831587 FORWARD LENGTH=187;; (*ITAG) Solyc01g108190.2.1 (e_value=6e-117) genomic_reference:SL2.40ch01 gene_region:87315276-87316549 transcript_region:SL2.40ch01:87315276..87316549- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q67TZ4_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00039537g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|84; (*ITAG) Solyc11g056280.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43083869-43084036 transcript_region:SL2.40ch11:43083869..43084036+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020065g0004.1 protein AED:0.00 eAED:0.00 QI:297|1|1|1|1|1|3|183|251; (*GB) gi|255584505|ref|XP_002532981.1| (e_value=5e-96) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g023510.1.1 (e_value=9e-85) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:16967002-16967463 transcript_region:SL2.40ch08:16967002..16967463+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012091g0002.1 protein AED:0.64 eAED:0.81 QI:0|0|0.16|0.5|0|0|6|147|191 NbS00015876g0007.1 protein AED:0.07 eAED:0.07 QI:590|1|0.66|1|1|1|3|393|653; (*GB) gi|225448982|ref|XP_002270524.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 14 [Vitis vinifera];; (*SWP) sp|Q8VZ40|PUB14_ARATH (e_value=0.0) U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1;; (*TAIR) AT3G54850.1 (e_value=0.0) | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20321524-20323848 FORWARD LENGTH=632;; (*ITAG) Solyc11g008390.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2592403-2595079 transcript_region:SL2.40ch11:2592403..2595079- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 14 (AHRD V1 **-- PUB14_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00015876g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.57|0.5|0.87|1|1|8|230|637; (*GB) gi|225448978|ref|XP_002273219.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SS48|SDP6_ARATH (e_value=0.0) Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial OS=Arabidopsis thaliana GN=SDP6 PE=1 SV=1;; (*TAIR) AT3G10370.1 (e_value=0.0) | Symbols: SDP6 | FAD-dependent oxidoreductase family protein | chr3:3216502-3219027 FORWARD LENGTH=629;; (*ITAG) Solyc11g008380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2582420-2589330 transcript_region:SL2.40ch11:2582420..2589330- go_terms:GO:0004368 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** B0EVL7_BOMMO); contains Interpro domain(s) IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004368 NbS00015876g0004.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|129; (*ITAG) Solyc11g012550.1.1 (e_value=8e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5357146-5365080 transcript_region:SL2.40ch11:5357146..5365080+ functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00004610g0006.1 protein AED:0.00 eAED:0.00 QI:182|1|1|1|1|1|3|193|991; (*GB) gi|225462943|ref|XP_002267746.1| (e_value=0.0) PREDICTED: protein argonaute 7-like [Vitis vinifera];; (*SWP) sp|Q9C793|AGO7_ARATH (e_value=0.0) Protein argonaute 7 OS=Arabidopsis thaliana GN=AGO7 PE=2 SV=1;; (*TAIR) AT1G69440.1 (e_value=0.0) | Symbols: AGO7, ZIP | Argonaute family protein | chr1:26101565-26105016 REVERSE LENGTH=990;; (*ITAG) Solyc01g010970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6612318-6616335 transcript_region:SL2.40ch01:6612318..6616335+ go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00004610g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|65; (*GB) gi|15223027|ref|NP_172854.1| (e_value=2e-30) emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT1G14010.1 (e_value=5e-33) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:4800385-4801790 REVERSE LENGTH=212;; (*ITAG) Solyc04g005570.2.1 (e_value=1e-34) genomic_reference:SL2.40ch04 gene_region:379991-382905 transcript_region:SL2.40ch04:379991..382905- go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00000476g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|593; (*GB) gi|147866064|emb|CAN80963.1| (e_value=0.0) hypothetical protein VITISV_005607 [Vitis vinifera];; (*TAIR) AT3G09520.1 (e_value=0.0) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00000476g0009.1 protein AED:0.24 eAED:0.30 QI:0|0.75|0.8|1|0.75|0.8|5|541|291; (*GB) gi|118483499|gb|ABK93648.1| (e_value=2e-144) unknown [Populus trichocarpa];; (*SWP) sp|Q9C8G4|PLY4_ARATH (e_value=1e-47) Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1;; (*TAIR) AT3G55140.1 (e_value=1e-137) | Symbols: | Pectin lyase-like superfamily protein | chr3:20438819-20440225 FORWARD LENGTH=331;; (*ITAG) Solyc09g005850.2.1 (e_value=3e-157) genomic_reference:SL2.40ch09 gene_region:591874-597023 transcript_region:SL2.40ch09:591874..597023- go_terms:GO:0030570 functional_description:"Pectate lyase 1 (AHRD V1 **** B3SXR0_HEVBR); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0030570 NbS00005230g0007.1 protein AED:0.00 eAED:0.00 QI:4356|1|1|1|0|0|2|66|66 NbS00005230g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.6|1|1|0.8|5|0|672; (*GB) gi|255547420|ref|XP_002514767.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8WTW3|COG1_HUMAN (e_value=3e-16) Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1;; (*TAIR) AT5G16300.4 (e_value=0.0) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr5:5338125-5342186 FORWARD LENGTH=1035;; (*ITAG) Solyc03g120700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63049230-63059597 transcript_region:SL2.40ch03:63049230..63059597+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 1 (AHRD V1 **-- COG1_MOUSE); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0005515 NbS00005230g0001.1 protein AED:0.37 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|350; (*GB) gi|334187714|ref|NP_001190320.1| (e_value=2e-133) Vps51/Vps67 family (components of vesicular transport) protein [Arabidopsis thaliana];; (*SWP) sp|Q9Z160|COG1_MOUSE (e_value=3e-24) Conserved oligomeric Golgi complex subunit 1 OS=Mus musculus GN=Cog1 PE=2 SV=3;; (*TAIR) AT5G16300.4 (e_value=4e-136) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr5:5338125-5342186 FORWARD LENGTH=1035;; (*ITAG) Solyc03g120700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63049230-63059597 transcript_region:SL2.40ch03:63049230..63059597+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 1 (AHRD V1 **-- COG1_MOUSE); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0005515 NbC25331100g0001.1 protein AED:0.00 eAED:0.00 QI:84|-1|0|1|-1|1|1|0|113; (*GB) gi|417371|sp|Q03461.1|NLTP2_TOBAC (e_value=3e-50) RecName: Full=Non-specific lipid-transfer protein 2; Short=LTP 2; Flags: Precursor;; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=9e-52) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=1e-20) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075110.1.1 (e_value=1e-44) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:58157020-58157628 transcript_region:SL2.40ch10:58157020..58157628- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen "; GO:0006869 NbS00060358g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|184; (*GB) gi|225455244|ref|XP_002271388.1| (e_value=1e-71) PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Vitis vinifera];; (*SWP) sp|Q9FZ59|PEPR2_ARATH (e_value=1e-36) Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1;; (*TAIR) AT1G17750.1 (e_value=7e-38) | Symbols: PEPR2, AtPEPR2 | PEP1 receptor 2 | chr1:6106656-6110008 FORWARD LENGTH=1088;; (*ITAG) Solyc03g082470.2.1 (e_value=9e-94) genomic_reference:SL2.40ch03 gene_region:45939634-45943468 transcript_region:SL2.40ch03:45939634..45943468+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00011252g0004.1 protein AED:0.53 eAED:0.54 QI:0|0.6|0.16|0.83|0.4|0.83|6|0|206; (*GB) gi|224104939|ref|XP_002313626.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54K66|PNO1_DICDI (e_value=3e-15) RNA-binding protein pno1 OS=Dictyostelium discoideum GN=pno1 PE=3 SV=1;; (*TAIR) AT3G44050.1 (e_value=5e-28) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:15818738-15824792 FORWARD LENGTH=1263;; (*ITAG) Solyc11g071730.1.1 (e_value=4e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52210463-52220734 transcript_region:SL2.40ch11:52210463..52220734+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LXV6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00020935g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|254; (*GB) gi|147852004|emb|CAN80190.1| (e_value=2e-52) hypothetical protein VITISV_042373 [Vitis vinifera];; (*TAIR) AT5G11890.1 (e_value=2e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287;; (*ITAG) Solyc11g069970.1.1 (e_value=4e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51649333-51650118 transcript_region:SL2.40ch11:51649333..51650118- functional_description:"Harpin-induced 1 (AHRD V1 ***- A2Q440_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00005543g0006.1 protein AED:0.18 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|390; (*GB) gi|356566032|ref|XP_003551239.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100799507 [Glycine max];; (*TAIR) AT2G30090.1 (e_value=1e-121) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:12843583-12845597 REVERSE LENGTH=386;; (*ITAG) Solyc02g064690.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:30347644-30349884 transcript_region:SL2.40ch02:30347644..30349884- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q7EYF5_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00048220g0003.1 protein AED:0.08 eAED:0.08 QI:242|1|0.92|1|0.91|0.92|13|593|685; (*GB) gi|359483452|ref|XP_002270330.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera];; (*SWP) sp|P43254|COP1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT2G32950.1 (e_value=0.0) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc11g011980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4927052-4931762 transcript_region:SL2.40ch11:4927052..4931762- go_terms:GO:0008270 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00025591g0005.1 protein AED:0.46 eAED:0.50 QI:0|0|0|1|1|1|3|0|198 NbS00001625g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|18409685|ref|NP_566972.1| (e_value=8e-19) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G52740.1 (e_value=2e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19546446-19546868 REVERSE LENGTH=140;; (*ITAG) Solyc11g068380.1.1 (e_value=2e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50220274-50221120 transcript_region:SL2.40ch11:50220274..50221120+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001625g0005.1 protein AED:0.35 eAED:0.35 QI:238|1|1|1|0.5|0.66|3|993|72; (*GB) gi|1174870|sp|P46270.1|QCR9_SOLTU (e_value=8e-36) RecName: Full=Cytochrome b-c1 complex subunit 9; AltName: Full=Complex III subunit 9; AltName: Full=Complex III subunit X; AltName: Full=Ubiquinol-cytochrome c reductase complex 8.0 kDa protein;; (*SWP) sp|P46270|QCR9_SOLTU (e_value=2e-37) Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G52730.1 (e_value=3e-37) | Symbols: | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | chr3:19543146-19544167 REVERSE LENGTH=72;; (*ITAG) Solyc11g068400.1.1 (e_value=2e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50223989-50227276 transcript_region:SL2.40ch11:50223989..50227276- go_terms:GO:0005740 functional_description:"Ubiquinol-cytochrome C reductase (AHRD V1 ***- D6BQN0_9ROSI); contains Interpro domain(s) IPR008027 Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like "; GO:0005740 NbS00031709g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|67973218|gb|AAY84146.1| (e_value=1e-24) lipid transfer protein [Catharanthus roseus];; (*SWP) sp|Q39950|NLTP_HELAN (e_value=2e-23) Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=9e-20) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc08g067550.1.1 (e_value=9e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:53771506-53771892 transcript_region:SL2.40ch08:53771506..53771892+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q93YX9_DAVIN); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbC25365687g0001.1 protein AED:0.15 eAED:0.63 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|350538321|ref|NP_001234849.1| (e_value=9e-54) hexose transporter 1 [Solanum lycopersicum];; (*SWP) sp|Q41144|STC_RICCO (e_value=4e-53) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=2e-53) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=2e-56) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00006607g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|84 NbS00006607g0113.1 protein AED:0.31 eAED:0.31 QI:0|0.16|0|0.85|0.16|0.14|7|0|363 NbS00006607g0110.1 protein AED:0.38 eAED:0.38 QI:181|0.87|1|1|1|0.88|9|405|243 NbS00006607g0102.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|236 NbS00006607g0107.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|79 NbS00003514g0015.1 protein AED:0.07 eAED:0.07 QI:476|0.69|0.57|0.85|0.46|0.42|14|0|1057; (*GB) gi|255567441|ref|XP_002524700.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G21430.1 (e_value=1e-130) | Symbols: B160 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr4:11407835-11412159 REVERSE LENGTH=927;; (*ITAG) Solyc02g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38484926-38494133 transcript_region:SL2.40ch02:38484926..38494133- go_terms:GO:0032454,GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbS00003514g0014.1 protein AED:0.10 eAED:0.10 QI:235|0.88|0.8|1|0.88|0.8|10|284|428; (*GB) gi|224076733|ref|XP_002304988.1| (e_value=0.0) equilibrative nucleoside transporter [Populus trichocarpa];; (*TAIR) AT4G05120.1 (e_value=0.0) | Symbols: ENT3, FUR1, ATENT3 | Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418;; (*ITAG) Solyc02g079310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38499778-38501745 transcript_region:SL2.40ch02:38499778..38501745- go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H1Z9_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0005337 NbS00003514g0004.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|145; (*ITAG) Solyc02g079320.2.1 (e_value=6e-38) genomic_reference:SL2.40ch02 gene_region:38503969-38505268 transcript_region:SL2.40ch02:38503969..38505268- functional_description:"Unknown Protein (AHRD V1)"; NbS00003514g0016.1 protein AED:0.08 eAED:0.09 QI:0|0.66|0.25|1|0.66|0.75|4|0|251; (*GB) gi|28200388|gb|AAO31791.1| (e_value=2e-81) SP2G [Solanum lycopersicum];; (*SWP) sp|Q9XFK7|MFT_ARATH (e_value=3e-47) Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1;; (*TAIR) AT1G18100.1 (e_value=2e-48) | Symbols: E12A11, MFT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:6228049-6230110 REVERSE LENGTH=173;; (*ITAG) Solyc02g079290.2.1 (e_value=4e-84) genomic_reference:SL2.40ch02 gene_region:38483107-38484365 transcript_region:SL2.40ch02:38483107..38484365+ go_terms:GO:0008429 functional_description:"SELF PRUNING 2G"; GO:0008429 NbS00012844g0004.1 protein AED:0.13 eAED:0.16 QI:29|0.66|0.5|1|0.33|0.25|4|0|334; (*GB) gi|255536801|ref|XP_002509467.1| (e_value=2e-102) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20670.1 (e_value=9e-76) | Symbols: | Protein of unknown function (DUF506) | chr2:8912163-8913472 REVERSE LENGTH=294;; (*ITAG) Solyc02g078150.2.1 (e_value=2e-147) genomic_reference:SL2.40ch02 gene_region:37508378-37509790 transcript_region:SL2.40ch02:37508378..37509790+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00003036g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|1|1|2|0|233; (*GB) gi|378747452|gb|AFC36356.1| (e_value=1e-112) 2-oxoglutarate-dependent dioxygenase [Salvia miltiorrhiza];; (*SWP) sp|Q9SVS8|G3OX3_ARATH (e_value=2e-13) Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1;; (*TAIR) AT1G52790.1 (e_value=3e-85) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19662194-19663301 REVERSE LENGTH=310;; (*ITAG) Solyc06g067870.2.1 (e_value=2e-156) genomic_reference:SL2.40ch06 gene_region:38454720-38457123 transcript_region:SL2.40ch06:38454720..38457123- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL06_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00049466g0001.1 protein AED:0.30 eAED:0.41 QI:0|0|0|1|1|1|2|0|127 NbS00058850g0008.1 protein AED:0.35 eAED:0.37 QI:0|1|0.66|1|0|0.33|3|0|124; (*GB) gi|359488259|ref|XP_002280667.2| (e_value=5e-15) PREDICTED: uncharacterized protein LOC100249788 [Vitis vinifera];; (*ITAG) Solyc02g086170.2.1 (e_value=2e-48) genomic_reference:SL2.40ch02 gene_region:43498956-43501326 transcript_region:SL2.40ch02:43498956..43501326- functional_description:"Unknown Protein (AHRD V1)"; NbS00058850g0005.1 protein AED:0.29 eAED:0.29 QI:607|0.93|0.87|1|0.8|0.75|16|368|544; (*GB) gi|8347244|gb|AAF74566.1|AF215852_1 (e_value=0.0) hexose transporter [Nicotiana tabacum];; (*SWP) sp|Q56ZZ7|PLST4_ARATH (e_value=0.0) Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2;; (*TAIR) AT5G16150.3 (e_value=0.0) | Symbols: GLT1, PGLCT | plastidic GLC translocator | chr5:5272904-5275678 FORWARD LENGTH=546;; (*ITAG) Solyc02g086160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43489233-43498866 transcript_region:SL2.40ch02:43489233..43498866+ go_terms:GO:0015519 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00015184g0004.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|1|1|2|0|133; (*GB) gi|147787190|emb|CAN66834.1| (e_value=6e-23) hypothetical protein VITISV_030892 [Vitis vinifera];; (*ITAG) Solyc11g005460.1.1 (e_value=1e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:374639-378429 transcript_region:SL2.40ch11:374639..378429+ go_terms:GO:0008565 functional_description:"VHS domain-containing protein (AHRD V1 **-- D7MPR1_ARALY); contains Interpro domain(s) IPR004152 GAT "; GO:0008565 NbS00013766g0001.1 protein AED:0.44 eAED:0.55 QI:0|0|0|0.75|0|0|4|0|84; (*GB) gi|13384058|gb|AAK21253.1|AF335240_1 (e_value=5e-30) MADS-box transcription factor FBP22 [Petunia x hybrida];; (*SWP) sp|O64645|SOC1_ARATH (e_value=4e-24) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=3e-25) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc03g006830.2.1 (e_value=7e-35) genomic_reference:SL2.40ch03 gene_region:1331841-1343493 transcript_region:SL2.40ch03:1331841..1343493+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00000292g0001.1 protein AED:0.34 eAED:0.35 QI:269|1|0.5|1|0|0|2|0|170; (*GB) gi|296084365|emb|CBI24753.3| (e_value=2e-53) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24450.1 (e_value=8e-51) | Symbols: | Transcription factor IIIC, subunit 5 | chr5:8348780-8353130 FORWARD LENGTH=554;; (*ITAG) Solyc12g011180.1.1 (e_value=9e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4021936-4033273 transcript_region:SL2.40ch12:4021936..4033273- functional_description:"General transcription factor 3C polypeptide 5 (AHRD V1 *-*- TF3C5_HUMAN); contains Interpro domain(s) IPR019136 Transcription factor IIIC, subunit 5 "; NbS00000292g0009.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0|0|2|0|329; (*GB) gi|225434223|ref|XP_002275875.1| (e_value=5e-71) PREDICTED: transcription factor tau subunit sfc1-like [Vitis vinifera];; (*SWP) sp|Q9Y5Q8|TF3C5_HUMAN (e_value=2e-13) General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2;; (*TAIR) AT5G24450.1 (e_value=9e-56) | Symbols: | Transcription factor IIIC, subunit 5 | chr5:8348780-8353130 FORWARD LENGTH=554;; (*ITAG) Solyc12g011180.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4021936-4033273 transcript_region:SL2.40ch12:4021936..4033273- functional_description:"General transcription factor 3C polypeptide 5 (AHRD V1 *-*- TF3C5_HUMAN); contains Interpro domain(s) IPR019136 Transcription factor IIIC, subunit 5 "; NbS00054465g0003.1 protein AED:0.27 eAED:0.27 QI:993|0.85|0.75|0.87|1|1|8|0|530; (*GB) gi|296084463|emb|CBI25022.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WMY5|PP365_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1;; (*TAIR) AT5G04810.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:1390049-1393760 FORWARD LENGTH=952;; (*ITAG) Solyc11g006680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1285136-1294394 transcript_region:SL2.40ch11:1285136..1294394- go_terms:GO:0003676,GO:0000166 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LY59_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00054465g0002.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.6|1|1|5|0|125; (*GB) gi|297806463|ref|XP_002871115.1| (e_value=8e-33) pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q0WMY5|PP365_ARATH (e_value=6e-33) Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1;; (*TAIR) AT5G04810.1 (e_value=5e-34) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:1390049-1393760 FORWARD LENGTH=952;; (*ITAG) Solyc11g006680.1.1 (e_value=2e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1285136-1294394 transcript_region:SL2.40ch11:1285136..1294394- go_terms:GO:0003676,GO:0000166 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LY59_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00043363g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.88|0.8|1|0.55|0.5|10|110|492; (*GB) gi|1786115|gb|AAB41107.1| (e_value=0.0) phosphoinositide-specific phospholipase C [Vigna unguiculata];; (*SWP) sp|Q56W08|PLCD3_ARATH (e_value=9e-161) Phosphoinositide phospholipase C 3 OS=Arabidopsis thaliana GN=PLC3 PE=2 SV=1;; (*TAIR) AT4G38530.1 (e_value=7e-162) | Symbols: ATPLC1, PLC1 | phospholipase C1 | chr4:18020708-18022898 FORWARD LENGTH=564;; (*ITAG) Solyc06g051620.2.1 (e_value=1e-155) genomic_reference:SL2.40ch06 gene_region:31659606-31666640 transcript_region:SL2.40ch06:31659606..31666640- go_terms:GO:0004435 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (Phosphoinositide-specific phospholipase c) (AHRD V1 *-** O49950_SOLTU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0004435 NbS00024930g0011.1 protein AED:0.18 eAED:0.18 QI:310|0.83|0.76|1|0.91|0.76|13|511|858; (*GB) gi|359485142|ref|XP_002279792.2| (e_value=0.0) PREDICTED: protein MEI2-like 2-like [Vitis vinifera];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc10g007770.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00024930g0006.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|225446853|ref|XP_002283729.1| (e_value=6e-84) PREDICTED: uncharacterized protein LOC100257403 [Vitis vinifera];; (*TAIR) AT2G42900.1 (e_value=2e-50) | Symbols: | Plant basic secretory protein (BSP) family protein | chr2:17854599-17855429 FORWARD LENGTH=276;; (*ITAG) Solyc10g007750.1.1 (e_value=3e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1990697-1991530 transcript_region:SL2.40ch10:1990697..1991530+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007541 Plant Basic Secretory Protein "; NbS00024930g0010.1 protein AED:0.25 eAED:0.25 QI:50|1|1|1|1|1|7|455|321; (*GB) gi|359485140|ref|XP_002279775.2| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 4-like [Vitis vinifera];; (*SWP) sp|Q680A5|KPRS4_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsis thaliana GN=PRS4 PE=2 SV=2;; (*TAIR) AT2G42910.1 (e_value=0.0) | Symbols: | Phosphoribosyltransferase family protein | chr2:17856396-17858394 FORWARD LENGTH=337;; (*ITAG) Solyc10g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1994533-1999282 transcript_region:SL2.40ch10:1994533..1999282+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase 4 (AHRD V1 ***- D7LJE3_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00025406g0004.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.66|0|0.33|3|0|73; (*ITAG) Solyc01g059760.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00025406g0006.1 protein AED:0.79 eAED:0.89 QI:0|0|0|0.25|1|1|4|0|196 NbS00025406g0005.1 protein AED:0.28 eAED:0.41 QI:0|0|0|1|0|0|2|0|75 NbS00031184g0007.1 protein AED:0.20 eAED:0.20 QI:307|1|1|1|1|1|13|187|610; (*GB) gi|148923087|gb|ABR18801.1| (e_value=0.0) kinase-associated protein phosphatase 1 [Solanum peruvianum];; (*SWP) sp|P46014|P2C70_ARATH (e_value=0.0) Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2;; (*TAIR) AT5G19280.1 (e_value=0.0) | Symbols: KAPP, RAG1 | kinase associated protein phosphatase | chr5:6488450-6493182 FORWARD LENGTH=581;; (*ITAG) Solyc01g079720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71336146-71351250 transcript_region:SL2.40ch01:71336146..71351250- go_terms:GO:0004721,GO:0019901 functional_description:"Kinase-associated protein phosphatase 1 (AHRD V1 **** A6N8J3_SOLPE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004721,GO:0019901 NbS00019638g0010.1 protein AED:0.25 eAED:0.25 QI:268|0.5|0.4|1|0.5|0.8|5|0|422; (*GB) gi|225465455|ref|XP_002267492.1| (e_value=1e-164) PREDICTED: solute carrier family 35 member F5 [Vitis vinifera];; (*TAIR) AT3G07080.1 (e_value=3e-138) | Symbols: | EamA-like transporter family | chr3:2241360-2242934 FORWARD LENGTH=438;; (*ITAG) Solyc09g061320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54256324-54260377 transcript_region:SL2.40ch09:54256324..54260377- go_terms:GO:0005515,GO:0022857 functional_description:"Solute carrier family 35 member F4 (AHRD V1 **-- C0HBH8_SALSA); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0005515,GO:0022857 NbS00019638g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0.5|1|1|0.5|2|248|188; (*GB) gi|297744348|emb|CBI37318.3| (e_value=4e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G07090.1 (e_value=1e-53) | Symbols: | PPPDE putative thiol peptidase family protein | chr3:2243153-2244476 REVERSE LENGTH=265;; (*ITAG) Solyc09g061310.2.1 (e_value=4e-83) genomic_reference:SL2.40ch09 gene_region:54244078-54246052 transcript_region:SL2.40ch09:54244078..54246052+ functional_description:"PPPDE peptidase domain containing 2a (AHRD V1 *--- Q6PC81_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00010292g0003.1 protein AED:0.68 eAED:0.68 QI:21|0|0|0.33|1|1|3|0|153; (*GB) gi|297734902|emb|CBI17136.3| (e_value=1e-44) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=1e-13) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc11g066380.1.1 (e_value=2e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49235503-49238383 transcript_region:SL2.40ch11:49235503..49238383+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00022558g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.78|0.8|0.93|0.78|0.8|15|77|665; (*GB) gi|255568418|ref|XP_002525183.1| (e_value=0.0) DNA replication licensing factor MCM8, putative [Ricinus communis];; (*SWP) sp|Q9CWV1|MCM8_MOUSE (e_value=3e-138) DNA replication licensing factor MCM8 OS=Mus musculus GN=Mcm8 PE=2 SV=3;; (*TAIR) AT3G09660.1 (e_value=0.0) | Symbols: MCM8 | minichromosome maintenance 8 | chr3:2961314-2966166 REVERSE LENGTH=777;; (*ITAG) Solyc09g007330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:920490-930153 transcript_region:SL2.40ch09:920490..930153- go_terms:GO:0043140 functional_description:"DNA replication licensing factor MCM6 (AHRD V1 **** B3LHP9_YEAS1); contains Interpro domain(s) IPR001208 DNA-dependent ATPase MCM "; GO:0043140 NbS00022558g0007.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|0|0|2|0|773; (*GB) gi|225439751|ref|XP_002273172.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SF38|PP222_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1;; (*TAIR) AT3G09650.1 (e_value=0.0) | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2958704-2961040 FORWARD LENGTH=778;; (*ITAG) Solyc09g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:917949-920536 transcript_region:SL2.40ch09:917949..920536+ go_terms:GO:0003729,GO:0008270 functional_description:"Pentatricopeptide repeat protein (AHRD V1 *-*- A7BJL0_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003729,GO:0008270 NbS00017381g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.42|0.25|0.87|0.14|0.25|8|0|289; (*GB) gi|213495900|gb|ACJ49170.1| (e_value=1e-91) protection of telomeres 1 protein [Nicotiana tabacum];; (*SWP) sp|Q6NKX5|POT1B_ARATH (e_value=7e-35) Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1;; (*TAIR) AT5G06310.1 (e_value=5e-36) | Symbols: AtPOT1b | Nucleic acid-binding, OB-fold-like protein | chr5:1928468-1930795 FORWARD LENGTH=454;; (*ITAG) Solyc02g070300.2.1 (e_value=5e-90) genomic_reference:SL2.40ch02 gene_region:34660820-34669876 transcript_region:SL2.40ch02:34660820..34669876+ go_terms:GO:0000784 functional_description:"Protection of telomeres 1 protein (AHRD V1 ***- B7T1K5_SOLTU); contains Interpro domain(s) IPR011564 Telomere end binding protein "; GO:0000784 NbS00017381g0009.1 protein AED:0.21 eAED:0.21 QI:87|0.83|0.57|1|1|1|7|0|573; (*GB) gi|225457648|ref|XP_002275451.1| (e_value=5e-156) PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera];; (*SWP) sp|Q84JG2|SWI3B_ARATH (e_value=4e-117) SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1;; (*TAIR) AT2G33610.1 (e_value=3e-118) | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 | chr2:14229023-14231149 FORWARD LENGTH=469;; (*ITAG) Solyc04g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63911634-63915550 transcript_region:SL2.40ch04:63911634..63915550- go_terms:GO:0042802 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_MOUSE); contains Interpro domain(s) IPR007526 SWIRM "; GO:0042802 NbS00017381g0012.1 protein AED:0.27 eAED:0.32 QI:0|0|0|1|0|0.2|5|0|242; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-20) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00022745g0014.1 protein AED:0.03 eAED:0.03 QI:174|1|1|1|0.75|0.8|5|221|254; (*GB) gi|225427282|ref|XP_002278917.1| (e_value=2e-140) PREDICTED: expansin-like B1 [Vitis vinifera];; (*SWP) sp|Q850K7|EXLB1_ORYSJ (e_value=7e-107) Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2;; (*TAIR) AT4G17030.1 (e_value=5e-59) | Symbols: ATEXLB1, EXPR, AT-EXPR, ATEXPR1, ATHEXP BETA 3.1, EXLB1 | expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250;; (*ITAG) Solyc08g077330.2.1 (e_value=2e-172) genomic_reference:SL2.40ch08 gene_region:58389533-58391046 transcript_region:SL2.40ch08:58389533..58391046- go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A2ICD7_CUNLA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00022745g0017.1 protein AED:0.11 eAED:0.11 QI:0|1|0.93|1|0.85|0.86|15|0|610; (*GB) gi|225427288|ref|XP_002281722.1| (e_value=0.0) PREDICTED: dynamin-related protein 1E isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=0.0) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=0.0) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc08g077360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58405875-58412355 transcript_region:SL2.40ch08:58405875..58412355- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00022745g0019.1 protein AED:0.23 eAED:0.23 QI:356|1|1|1|0.75|0.8|5|271|251; (*GB) gi|363807864|ref|NP_001242699.1| (e_value=3e-133) uncharacterized protein LOC100802762 [Glycine max];; (*SWP) sp|Q9X0Y1|P1254_THEMA (e_value=1e-18) Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1;; (*TAIR) AT2G38740.1 (e_value=4e-118) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:16194639-16195995 REVERSE LENGTH=244;; (*ITAG) Solyc08g077350.2.1 (e_value=2e-158) genomic_reference:SL2.40ch08 gene_region:58402411-58405715 transcript_region:SL2.40ch08:58402411..58405715+ go_terms:GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 (AHRD V1 **-* B2IYD2_NOSP7); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787 NbS00022745g0022.1 protein AED:0.25 eAED:0.25 QI:0|0.86|0.68|0.93|0.93|0.87|16|0|1021; (*GB) gi|255584486|ref|XP_002532972.1| (e_value=0.0) RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q6DDU9|RBM5B_XENLA (e_value=3e-14) RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1;; (*TAIR) AT3G54230.2 (e_value=0.0) | Symbols: SUA | suppressor of abi3-5 | chr3:20073872-20080142 FORWARD LENGTH=1008;; (*ITAG) Solyc08g077310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58375403-58385976 transcript_region:SL2.40ch08:58375403..58385976+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"RNA-binding protein (AHRD V1 *--- C5JJR9_AJEDS); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166,GO:0005622 NbS00022745g0020.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|130 NbS00022745g0021.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|543; (*GB) gi|225427280|ref|XP_002278897.1| (e_value=1e-177) PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=2e-112) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=2e-113) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc08g077320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58386450-58388369 transcript_region:SL2.40ch08:58386450..58388369+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017898g0003.1 protein AED:0.23 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|346; (*GB) gi|255559953|ref|XP_002520995.1| (e_value=2e-148) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|O04336|WRK21_ARATH (e_value=6e-98) Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1;; (*TAIR) AT2G30590.1 (e_value=5e-99) | Symbols: WRKY21 | WRKY DNA-binding protein 21 | chr2:13033891-13035303 FORWARD LENGTH=380;; (*ITAG) Solyc09g066010.2.1 (e_value=2e-166) genomic_reference:SL2.40ch09 gene_region:59882612-59884663 transcript_region:SL2.40ch09:59882612..59884663+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 25 (AHRD V1 ***- C9DI14_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00015784g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|435; (*GB) gi|224127878|ref|XP_002320186.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G01430.1 (e_value=4e-169) | Symbols: TBL25 | TRICHOME BIREFRINGENCE-LIKE 25 | chr1:156953-158536 REVERSE LENGTH=456;; (*ITAG) Solyc01g095610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78581914-78585268 transcript_region:SL2.40ch01:78581914..78585268+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00015784g0007.1 protein AED:0.38 eAED:0.48 QI:0|0.5|0.66|1|0|0.33|3|148|73 NbS00007763g0005.1 protein AED:0.00 eAED:0.00 QI:144|1|1|1|0.75|0.6|5|310|88; (*GB) gi|225443562|ref|XP_002277951.1| (e_value=2e-40) PREDICTED: transcription elongation factor 1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LHP0|ELOF1_ORYSJ (e_value=1e-40) Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1;; (*TAIR) AT5G46030.1 (e_value=7e-36) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120;; (*ITAG) Solyc02g077440.2.1 (e_value=2e-40) genomic_reference:SL2.40ch02 gene_region:36959365-36961353 transcript_region:SL2.40ch02:36959365..36961353+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbC26078486g0002.1 protein AED:0.19 eAED:0.19 QI:24|1|0.5|1|1|1|2|0|290; (*GB) gi|7688355|emb|CAB89831.1| (e_value=5e-65) Dof zinc finger protein [Solanum tuberosum];; (*SWP) sp|Q9LZ56|DOF51_ARATH (e_value=4e-40) Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1;; (*TAIR) AT5G02460.1 (e_value=3e-41) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:539549-541058 REVERSE LENGTH=399;; (*ITAG) Solyc11g066050.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48809723-48810871 transcript_region:SL2.40ch11:48809723..48810871- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 ***- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00008023g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|317; (*GB) gi|257831435|gb|ACV71018.1| (e_value=2e-72) UPA18 [Capsicum annuum];; (*TAIR) AT1G07310.1 (e_value=3e-45) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:2247775-2248833 REVERSE LENGTH=352;; (*ITAG) Solyc09g082950.1.1 (e_value=6e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64034680-64035654 transcript_region:SL2.40ch09:64034680..64035654+ functional_description:"C2 domain-containing protein-like (AHRD V1 *--- Q8W0F9_ORYSJ); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00015871g0004.1 protein AED:0.01 eAED:0.01 QI:43|1|1|1|1|1|2|205|93; (*GB) gi|147801609|emb|CAN74549.1| (e_value=1e-18) hypothetical protein VITISV_011099 [Vitis vinifera];; (*ITAG) Solyc07g054700.2.1 (e_value=1e-16) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00015871g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|129; (*ITAG) Solyc03g093900.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00017585g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|1|1|4|0|417; (*GB) gi|342837524|dbj|BAK57343.1| (e_value=0.0) actin1 [Morella rubra];; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00040124g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|224054544|ref|XP_002298313.1| (e_value=4e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=6e-20) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G24840.1 (e_value=5e-21) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc04g056550.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53648375-53648923 transcript_region:SL2.40ch04:53648375..53648923- go_terms:GO:0003700 functional_description:"MADS-box transcription factor 25 (AHRD V1 **** MAD25_ORYSJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003700 NbS00040124g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|87 NbS00009124g0005.1 protein AED:0.19 eAED:0.20 QI:324|0.57|0.5|1|0.57|0.5|8|0|876; (*GB) gi|225445605|ref|XP_002282408.1| (e_value=0.0) PREDICTED: CCR4-NOT transcription complex subunit 10-like [Vitis vinifera];; (*SWP) sp|Q5XIA4|CNOTA_RAT (e_value=3e-52) CCR4-NOT transcription complex subunit 10 OS=Rattus norvegicus GN=Cnot10 PE=2 SV=1;; (*TAIR) AT5G35430.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:13662077-13665735 FORWARD LENGTH=786;; (*ITAG) Solyc07g007890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2555369-2565293 transcript_region:SL2.40ch07:2555369..2565293- go_terms:GO:0005515 functional_description:"CCR4-NOT transcription complex subunit 10 (AHRD V1 *-*- Q28FZ8_XENTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00015941g0003.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.75|1|0.66|0.5|4|396|267; (*GB) gi|255577954|ref|XP_002529849.1| (e_value=6e-124) Adaptin ear-binding coat-associated protein, putative [Ricinus communis];; (*SWP) sp|Q681Q7|Y1390_ARATH (e_value=1e-98) Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1;; (*TAIR) AT1G03900.1 (e_value=7e-100) | Symbols: ATNAP4, NAP4 | non-intrinsic ABC protein 4 | chr1:991252-992852 FORWARD LENGTH=272;; (*ITAG) Solyc06g008340.2.1 (e_value=4e-143) genomic_reference:SL2.40ch06 gene_region:2216005-2219508 transcript_region:SL2.40ch06:2216005..2219508- go_terms:GO:0005515,GO:0042626 functional_description:"Adaptin ear-binding coat-associated protein 2 (AHRD V1 **** B4FAZ6_MAIZE); contains Interpro domain(s) IPR012466 Adaptin ear-binding coat-associated protein 1 NECAP-1 "; GO:0005515,GO:0042626 NbS00015225g0001.1 protein AED:0.19 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|82621168|gb|ABB86272.1| (e_value=4e-15) unknown [Solanum tuberosum];; (*ITAG) Solyc03g119480.2.1 (e_value=3e-17) genomic_reference:SL2.40ch03 gene_region:62133397-62134846 transcript_region:SL2.40ch03:62133397..62134846+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008487g0003.1 protein AED:0.05 eAED:0.05 QI:52|1|1|1|1|1|6|138|492; (*GB) gi|73918031|gb|AAZ93631.1| (e_value=0.0) endo-beta-1,4-glucanase [Nicotiana tabacum];; (*SWP) sp|Q9C9H5|GUN9_ARATH (e_value=0.0) Endoglucanase 9 OS=Arabidopsis thaliana GN=CEL3 PE=1 SV=1;; (*TAIR) AT1G71380.1 (e_value=0.0) | Symbols: ATGH9B3, ATCEL3, CEL3 | cellulase 3 | chr1:26899989-26901749 REVERSE LENGTH=484;; (*ITAG) Solyc11g040340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30549361-30551528 transcript_region:SL2.40ch11:30549361..30551528- go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00059393g0001.1 protein AED:0.22 eAED:0.22 QI:204|0.66|0.5|1|1|1|4|0|287; (*GB) gi|388502234|gb|AFK39183.1| (e_value=5e-116) unknown [Lotus japonicus];; (*SWP) sp|O23403|PPD1_ARATH (e_value=9e-109) PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1;; (*TAIR) AT4G15510.1 (e_value=7e-110) | Symbols: | Photosystem II reaction center PsbP family protein | chr4:8860701-8862529 FORWARD LENGTH=287;; (*ITAG) Solyc01g106090.2.1 (e_value=4e-173) genomic_reference:SL2.40ch01 gene_region:85840962-85843969 transcript_region:SL2.40ch01:85840962..85843969+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 *-*- B8HJK6_CYAP4); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0019898 NbS00059393g0003.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|224103841|ref|XP_002313215.1| (e_value=9e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g106100.2.1 (e_value=8e-56) genomic_reference:SL2.40ch01 gene_region:85844348-85845751 transcript_region:SL2.40ch01:85844348..85845751- functional_description:"DUF593-containing protein 2 (AHRD V1 ***- B0F6T0_MEDTR); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00059393g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|255554605|ref|XP_002518341.1| (e_value=2e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106100.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:85844348-85845751 transcript_region:SL2.40ch01:85844348..85845751- functional_description:"DUF593-containing protein 2 (AHRD V1 ***- B0F6T0_MEDTR); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00005714g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|350535226|ref|NP_001234695.1| (e_value=2e-65) ethylene responsive element binding protein [Solanum lycopersicum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=8e-57) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=6e-58) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc09g089930.1.1 (e_value=8e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64891312-64892034 transcript_region:SL2.40ch09:64891312..64892034+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00026065g0006.1 protein AED:0.24 eAED:0.24 QI:121|0.81|0.91|1|0.90|0.91|12|384|439; (*GB) gi|193290700|gb|ACF17658.1| (e_value=0.0) putative 3-isopropylmalate dehydrogenase large subunit [Capsicum annuum];; (*SWP) sp|P93832|LEU32_ARATH (e_value=0.0) 3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=1 SV=1;; (*TAIR) AT1G80560.1 (e_value=0.0) | Symbols: ATIMD2, IMD2 | isopropylmalate dehydrogenase 2 | chr1:30287833-30290126 FORWARD LENGTH=405;; (*ITAG) Solyc05g009030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3194068-3201893 transcript_region:SL2.40ch05:3194068..3201893- go_terms:GO:0003862 functional_description:"3-isopropylmalate dehydrogenase (AHRD V1 **** B5LAV1_CAPAN); contains Interpro domain(s) IPR004429 Isopropylmalate dehydrogenase "; GO:0003862 NbS00021870g0009.1 protein AED:0.18 eAED:0.18 QI:3|0.88|0.7|1|0.88|0.9|10|0|350; (*SWP) sp|Q39011|KSG7_ARATH (e_value=0.0) Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2;; (*TAIR) AT4G18710.1 (e_value=0.0) | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein kinase superfamily protein | chr4:10296474-10298913 FORWARD LENGTH=380;; (*ITAG) Solyc02g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36164733-36171575 transcript_region:SL2.40ch02:36164733..36171575+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00021870g0008.1 protein AED:0.29 eAED:0.30 QI:0|1|0|1|1|1|2|0|196; (*TAIR) AT2G34200.1 (e_value=2e-21) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:14441105-14441882 FORWARD LENGTH=222;; (*ITAG) Solyc03g006060.2.1 (e_value=1e-82) genomic_reference:SL2.40ch03 gene_region:748380-751167 transcript_region:SL2.40ch03:748380..751167- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *--- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00058142g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.25|1|1|1|4|0|243; (*SWP) sp|Q9SJE8|ALMT2_ARATH (e_value=1e-76) Aluminum-activated malate transporter 2 OS=Arabidopsis thaliana GN=ALMT2 PE=2 SV=2;; (*TAIR) AT1G08440.1 (e_value=9e-78) | Symbols: | Aluminium activated malate transporter family protein | chr1:2663027-2665343 FORWARD LENGTH=501;; (*ITAG) Solyc11g068970.1.1 (e_value=5e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50629856-50633071 transcript_region:SL2.40ch11:50629856..50633071+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00061764g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|481; (*TAIR) AT3G23160.1 (e_value=8e-90) | Symbols: | Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531;; (*ITAG) Solyc10g084880.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:63580319-63582004 transcript_region:SL2.40ch10:63580319..63582004- functional_description:"Avr9/Cf-9 rapidly elicited protein 137 (AHRD V1 ***- Q9FQZ2_TOBAC); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00029260g0003.1 protein AED:0.23 eAED:0.23 QI:158|0.83|0.71|1|0.66|0.57|7|0|441; (*TAIR) AT1G73805.1 (e_value=6e-130) | Symbols: | Calmodulin binding protein-like | chr1:27745761-27749178 REVERSE LENGTH=451;; (*ITAG) Solyc03g119250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61943066-61945914 transcript_region:SL2.40ch03:61943066..61945914- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** Q9FKL6_ARATH); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00019012g0005.1 protein AED:0.00 eAED:0.00 QI:65|1|1|1|1|1|2|8|336; (*ITAG) Solyc03g096750.1.1 (e_value=1e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:52543139-52546327 transcript_region:SL2.40ch03:52543139..52546327- go_terms:GO:0008270 functional_description:"Os07g0102900 protein (Fragment) (AHRD V1 *-*- Q0D974_ORYSJ); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00019012g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|210; (*SWP) sp|P0C8Q9|Y5902_ARATH (e_value=1e-22) Uncharacterized protein At5g19025 OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=3;; (*TAIR) AT3G01170.1 (e_value=4e-70) | Symbols: | Ribosomal protein L34e superfamily protein | chr3:58043-58690 FORWARD LENGTH=215;; (*ITAG) Solyc02g067250.1.1 (e_value=3e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32018101-32018754 transcript_region:SL2.40ch02:32018101..32018754+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7LAI5_ARALY); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0005840 NbS00040744g0010.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|201|154; (*ITAG) Solyc06g008150.2.1 (e_value=4e-16) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00040744g0001.1 protein AED:0.10 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|287; (*ITAG) Solyc01g109820.1.1 (e_value=9e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88433260-88434129 transcript_region:SL2.40ch01:88433260..88434129- go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *-*- B9QDQ8_TOXGO); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00042716g0005.1 protein AED:0.00 eAED:0.00 QI:223|1|1|1|1|1|4|758|170; (*TAIR) AT3G09980.1 (e_value=2e-50) | Symbols: | Family of unknown function (DUF662) | chr3:3069358-3071145 FORWARD LENGTH=178;; (*ITAG) Solyc10g083520.1.1 (e_value=1e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62639481-62640898 transcript_region:SL2.40ch10:62639481..62640898+ functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00019960g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|161; (*ITAG) Solyc05g041440.2.1 (e_value=4e-31) genomic_reference:SL2.40ch05 gene_region:50947911-50949818 transcript_region:SL2.40ch05:50947911..50949818- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH)"; GO:0005515 NbS00019960g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|116; (*ITAG) Solyc05g041470.2.1 (e_value=2e-32) genomic_reference:SL2.40ch05 gene_region:50961226-50966509 transcript_region:SL2.40ch05:50961226..50966509- functional_description:"Transient receptor potential cation channel subfamily A member 1 homolog (AHRD V1 *--- TRPA1_CAEEL); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00006446g0005.1 protein AED:0.06 eAED:0.06 QI:230|0.66|0.85|1|0.33|0.57|7|556|403; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=3e-102) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=2e-103) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc06g008600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2502832-2509577 transcript_region:SL2.40ch06:2502832..2509577+ go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00028368g0107.1 protein AED:0.07 eAED:0.07 QI:965|1|0.83|1|0.8|0.66|6|0|241 NbS00028368g0108.1 protein AED:0.28 eAED:1.00 QI:0|0|0|1|0|0|2|0|103 NbS00012500g0004.1 protein AED:0.18 eAED:0.18 QI:73|1|0.83|1|1|1|6|304|428; (*SWP) sp|Q5U2S3|ZUFSP_RAT (e_value=1e-31) Zinc finger with UFM1-specific peptidase domain protein OS=Rattus norvegicus GN=Zufsp PE=2 SV=1;; (*TAIR) AT5G24680.1 (e_value=5e-100) | Symbols: | Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | chr5:8453666-8455358 FORWARD LENGTH=399;; (*ITAG) Solyc06g072970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41362400-41365291 transcript_region:SL2.40ch06:41362400..41365291- functional_description:"Zinc finger with UFM1-specific peptidase domain (Fragment) (AHRD V1 *-*- D8KW51_ZONAL); contains Interpro domain(s) IPR012462 Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 "; NbS00012500g0019.1 protein AED:0.02 eAED:0.03 QI:0|0.83|0.85|1|0.66|0.71|7|0|1012; (*SWP) sp|Q8LPK2|AB2B_ARATH (e_value=0.0) ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3;; (*TAIR) AT4G25960.1 (e_value=0.0) | Symbols: PGP2 | P-glycoprotein 2 | chr4:13177438-13183425 FORWARD LENGTH=1273;; (*ITAG) Solyc06g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00012500g0020.1 protein AED:0.06 eAED:0.06 QI:117|1|1|1|1|1|4|178|220; (*ITAG) Solyc06g072930.2.1 (e_value=2e-100) genomic_reference:SL2.40ch06 gene_region:41344913-41346744 transcript_region:SL2.40ch06:41344913..41346744+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012500g0021.1 protein AED:0.22 eAED:0.24 QI:35|0.75|0.4|1|0.75|0.6|5|0|377; (*SWP) sp|Q9C6L8|ALMT4_ARATH (e_value=2e-149) Aluminum-activated malate transporter 4 OS=Arabidopsis thaliana GN=ALMT4 PE=3 SV=1;; (*TAIR) AT1G25480.1 (e_value=1e-150) | Symbols: | Aluminium activated malate transporter family protein | chr1:8948467-8950876 FORWARD LENGTH=548;; (*ITAG) Solyc06g072920.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41342430-41343928 transcript_region:SL2.40ch06:41342430..41343928+ go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 **-- Q5Z6M5_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00012500g0006.1 protein AED:0.44 eAED:0.54 QI:0|0|0|0.5|1|1|4|0|196; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=4e-28) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=3e-29) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc06g072950.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41354896-41355647 transcript_region:SL2.40ch06:41354896..41355647+ go_terms:GO:0016021 functional_description:"ABC transporter-like protein (AHRD V1 ***- Q2V606_BRACM); contains Interpro domain(s) IPR017940 ABC transporter integral membrane type 1 "; GO:0016021 NbS00023144g0001.1 protein AED:0.11 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|134; (*SWP) sp|P14009|14KD_DAUCA (e_value=1e-20) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=4e-23) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc08g079190.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59986130-59986546 transcript_region:SL2.40ch08:59986130..59986546- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6T836_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00051159g0011.1 protein AED:0.23 eAED:0.23 QI:49|1|0.71|1|0.66|0.71|7|29|222; (*TAIR) AT1G02610.1 (e_value=2e-61) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:553181-555854 REVERSE LENGTH=221;; (*ITAG) Solyc01g079530.2.1 (e_value=9e-123) genomic_reference:SL2.40ch01 gene_region:71102398-71104995 transcript_region:SL2.40ch01:71102398..71104995- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH6 (AHRD V1 *--- C1HD92_PARBA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00051159g0012.1 protein AED:0.03 eAED:0.23 QI:133|0|0.5|1|0|0|2|0|84 NbS00051159g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.42|0.37|0.87|0.57|0.37|8|386|885; (*SWP) sp|Q6RI45|BRWD3_HUMAN (e_value=3e-19) Bromodomain and WD repeat-containing protein 3 OS=Homo sapiens GN=BRWD3 PE=1 SV=2;; (*TAIR) AT5G49430.1 (e_value=4e-115) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr5:20037338-20045454 REVERSE LENGTH=1677;; (*ITAG) Solyc01g079510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71069631-71090760 transcript_region:SL2.40ch01:71069631..71090760+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein-like (AHRD V1 *--- Q9FGX4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00051159g0016.1 protein AED:0.16 eAED:0.16 QI:9|0.81|0.60|1|0.72|0.73|23|266|1237; (*SWP) sp|O04716|MSH6_ARATH (e_value=0.0) DNA mismatch repair protein Msh6-1 OS=Arabidopsis thaliana GN=MSH6-1 PE=2 SV=2;; (*TAIR) AT4G02070.1 (e_value=0.0) | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | chr4:906079-912930 FORWARD LENGTH=1324;; (*ITAG) Solyc01g079520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71091922-71101937 transcript_region:SL2.40ch01:71091922..71101937+ go_terms:GO:0032137 functional_description:"DNA mismatch repair protein muts (AHRD V1 ***- Q16P35_AEDAE); contains Interpro domain(s) IPR017261 DNA mismatch repair protein Msh6 "; GO:0032137 NbS00022237g0009.1 protein AED:0.19 eAED:0.19 QI:732|0.5|0.44|0.88|0.87|0.77|9|240|409; (*TAIR) AT1G50620.1 (e_value=3e-18) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:18748537-18751005 FORWARD LENGTH=629;; (*ITAG) Solyc07g065000.2.1 (e_value=3e-100) genomic_reference:SL2.40ch07 gene_region:64167086-64172953 transcript_region:SL2.40ch07:64167086..64172953- go_terms:GO:0003677,GO:0008270 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--- KDM5B_MOUSE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00022237g0017.1 protein AED:0.30 eAED:0.30 QI:343|0.75|0.66|0.88|0.75|0.66|9|0|279; (*SWP) sp|P48528|PPX2_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2;; (*TAIR) AT5G55260.1 (e_value=0.0) | Symbols: PPX2, PPX-2 | protein phosphatase X 2 | chr5:22416808-22418621 FORWARD LENGTH=305;; (*ITAG) Solyc07g065020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64179982-64186849 transcript_region:SL2.40ch07:64179982..64186849- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I197_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00022237g0016.1 protein AED:0.33 eAED:0.34 QI:281|0.66|0.85|1|0.5|0.71|7|260|502; (*SWP) sp|Q9MAU5|Y1049_ARATH (e_value=2e-161) Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1;; (*TAIR) AT1G04970.1 (e_value=1e-162) | Symbols: | lipid-binding serum glycoprotein family protein | chr1:1411216-1413431 FORWARD LENGTH=488;; (*ITAG) Solyc07g065010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64173852-64179193 transcript_region:SL2.40ch07:64173852..64179193- go_terms:GO:0008289 functional_description:"Bactericidal permeability-increasing protein (AHRD V1 ***- Q4KTY6_ICTPU); contains Interpro domain(s) IPR017942 Lipid-binding serum glycoprotein, N-terminal "; GO:0008289 NbS00000213g0008.1 protein AED:0.05 eAED:0.05 QI:235|1|1|1|0.66|0.57|7|187|1087; (*SWP) sp|Q94AI4|METL1_ARATH (e_value=4e-142) Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=1 SV=1;; (*TAIR) AT4G09980.1 (e_value=0.0) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963;; (*ITAG) Solyc05g056220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64723434-64730469 transcript_region:SL2.40ch05:64723434..64730469- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00000213g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|407; (*SWP) sp|C0LGV0|Y5487_ARATH (e_value=3e-25) Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1;; (*TAIR) AT3G57120.1 (e_value=3e-127) | Symbols: | Protein kinase superfamily protein | chr3:21139099-21140469 FORWARD LENGTH=456;; (*ITAG) Solyc05g056200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:64713968-64715290 transcript_region:SL2.40ch05:64713968..64715290+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM30_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00015170g0013.1 protein AED:0.20 eAED:0.24 QI:0|0|0|0.33|0|0.33|3|0|375; (*ITAG) Solyc02g083190.1.1 (e_value=8e-105) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:41259040-41260329 transcript_region:SL2.40ch02:41259040..41260329+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00015170g0012.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|199; (*SWP) sp|Q7JUR6|GDAP2_DROME (e_value=3e-16) Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1;; (*TAIR) AT4G35750.1 (e_value=1e-120) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr4:16940865-16941674 REVERSE LENGTH=202;; (*ITAG) Solyc02g083250.2.1 (e_value=6e-137) genomic_reference:SL2.40ch02 gene_region:41284337-41285558 transcript_region:SL2.40ch02:41284337..41285558- functional_description:"Cellular retinaldehyde-binding/triple function C-terminal (AHRD V1 **-- B6SN40_MAIZE); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00015170g0001.1 protein AED:0.13 eAED:0.13 QI:253|1|1|1|0.75|0.6|5|368|204; (*SWP) sp|Q8GXB1|U548_ARATH (e_value=2e-104) UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1;; (*TAIR) AT2G17695.3 (e_value=2e-105) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1990 (InterPro:IPR018960). | chr2:7684214-7685009 REVERSE LENGTH=205;; (*ITAG) Solyc02g083180.2.1 (e_value=5e-134) genomic_reference:SL2.40ch02 gene_region:41254139-41255995 transcript_region:SL2.40ch02:41254139..41255995- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018960 Domain of unknown function DUF1990 "; NbS00000517g0006.1 protein AED:0.03 eAED:0.03 QI:0|0.25|0.2|1|1|1|5|0|618; (*SWP) sp|Q9LFB8|PTR5_ARATH (e_value=3e-174) Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1;; (*TAIR) AT5G01180.1 (e_value=2e-175) | Symbols: PTR5, ATPTR5 | peptide transporter 5 | chr5:61257-63240 REVERSE LENGTH=570;; (*ITAG) Solyc12g089230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62774318-62783414 transcript_region:SL2.40ch12:62774318..62783414+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_HUMAN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0016021 NbS00027121g0005.1 protein AED:0.32 eAED:0.32 QI:460|0.9|0.90|1|0.9|0.81|11|368|365; (*SWP) sp|Q9SUG3|ITPK2_ARATH (e_value=6e-127) Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2;; (*TAIR) AT4G08170.2 (e_value=5e-128) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr4:5163707-5167000 REVERSE LENGTH=353;; (*ITAG) Solyc12g088200.1.1 (e_value=7e-178) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62086971-62091994 transcript_region:SL2.40ch12:62086971..62091994+ go_terms:GO:0047325,GO:0005622 functional_description:"Inositol-tetrakisphosphate 1-kinase 3 (AHRD V1 ***- B4FHJ7_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0047325,GO:0005622 NbS00028294g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.75|0.55|1|0.75|0.66|9|0|537; (*SWP) sp|Q00624|ASOL_BRANA (e_value=0.0) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc04g082140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63511091-63515964 transcript_region:SL2.40ch04:63511091..63515964- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00054404g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|179; (*SWP) sp|Q9LIG6|NIFU4_ARATH (e_value=5e-85) NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1;; (*TAIR) AT3G20970.1 (e_value=4e-86) | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | chr3:7348277-7350069 FORWARD LENGTH=283;; (*ITAG) Solyc11g007120.1.1 (e_value=2e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1576541-1580907 transcript_region:SL2.40ch11:1576541..1580907+ go_terms:GO:0005515,GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_HAMD5); contains Interpro domain(s) IPR017065 HIRA-interacting protein 5 "; GO:0005515,GO:0005198 NbS00054404g0009.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0.42|1|0.66|0.42|7|0|315; (*TAIR) AT2G16980.1 (e_value=4e-15) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380525 FORWARD LENGTH=408;; (*ITAG) Solyc11g007130.1.1 (e_value=2e-116) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1583358-1588068 transcript_region:SL2.40ch11:1583358..1588068+ go_terms:GO:0016020,GO:0055085 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- C6ASI0_RHILS); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0055085 NbS00013988g0013.1 protein AED:0.06 eAED:0.08 QI:38|0.5|0.6|1|0.25|0.2|5|283|440; (*ITAG) Solyc03g111500.2.1 (e_value=1e-158) genomic_reference:SL2.40ch03 gene_region:56155588-56162558 transcript_region:SL2.40ch03:56155588..56162558- go_terms:GO:0005737,GO:0006355 functional_description:"B3 domain-containing protein Os01g0905400 (AHRD V1 *-*- Y1054_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005737,GO:0006355 NbS00013988g0012.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|0|0|2|32|118 NbS00013988g0014.1 protein AED:0.31 eAED:0.34 QI:0|0.79|0.6|0.96|0.58|0.68|25|0|741; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=0.0) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=0.0) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56209301-56240154 transcript_region:SL2.40ch03:56209301..56240154+ functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00048055g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|0|840; (*TAIR) AT5G41790.1 (e_value=2e-30) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc08g008260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2692144-2695984 transcript_region:SL2.40ch08:2692144..2695984+ functional_description:"Genomic DNA chromosome 5 TAC clone K16L22 (AHRD V1 *-*- Q9FJ36_ARATH)"; NbS00048055g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|87 NbS00012839g0003.1 protein AED:0.02 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|883; (*TAIR) AT5G41790.1 (e_value=5e-38) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc12g056060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47378490-47381135 transcript_region:SL2.40ch12:47378490..47381135- functional_description:"Genomic DNA chromosome 5 TAC clone K16L22 (AHRD V1 *-*- Q9FJ36_ARATH)"; NbS00012839g0011.1 protein AED:0.12 eAED:0.21 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|472; (*SWP) sp|Q9BZJ0|CRNL1_HUMAN (e_value=6e-167) Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4;; (*TAIR) AT5G41770.1 (e_value=0.0) | Symbols: | crooked neck protein, putative / cell cycle protein, putative | chr5:16718021-16720936 FORWARD LENGTH=705;; (*ITAG) Solyc12g056080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47407415-47416435 transcript_region:SL2.40ch12:47407415..47416435+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-splicing factor CLF1 (AHRD V1 ***- C5JTS1_AJEDS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00024581g0110.1 protein AED:0.40 eAED:0.40 QI:341|0.8|0.66|0.83|0.4|0.5|6|0|268 NbS00024581g0105.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.33|1|1|3|0|260 NbS00001170g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|185; (*SWP) sp|Q9USM7|TIM23_SCHPO (e_value=1e-13) Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tim23 PE=2 SV=1;; (*TAIR) AT1G72750.1 (e_value=4e-66) | Symbols: ATTIM23-2, TIM23-2 | translocase inner membrane subunit 23-2 | chr1:27383577-27384143 FORWARD LENGTH=188;; (*ITAG) Solyc12g049220.1.1 (e_value=1e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46073318-46073875 transcript_region:SL2.40ch12:46073318..46073875- go_terms:GO:0005743 functional_description:"Mitochondrial import inner membrane translocase subunit tim23 (AHRD V1 ***- B6T238_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00008357g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.4|0.25|0.2|5|0|521; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=4e-130) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=3e-131) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc03g117520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60711082-60712938 transcript_region:SL2.40ch03:60711082..60712938+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00019558g0008.1 protein AED:0.20 eAED:0.22 QI:0|0.76|0.78|1|0.76|0.78|14|258|809; (*SWP) sp|P93024|ARFE_ARATH (e_value=0.0) Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3;; (*TAIR) AT1G19850.1 (e_value=0.0) | Symbols: MP, ARF5, IAA24 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr1:6887353-6891182 FORWARD LENGTH=902;; (*ITAG) Solyc04g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62818343-62823877 transcript_region:SL2.40ch04:62818343..62823877- go_terms:GO:0005515,GO:0010843 functional_description:"Auxin response factor 5 (AHRD V1 ***- D9IVB5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005515,GO:0010843 NbS00051752g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|1297; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=0.0) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc05g007230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1866501-1870352 transcript_region:SL2.40ch05:1866501..1870352- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00002287g0007.1 protein AED:0.30 eAED:0.30 QI:85|1|1|1|1|1|5|269|148; (*SWP) sp|Q852S5|NDK2_TOBAC (e_value=2e-80) Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1;; (*TAIR) AT5G63310.1 (e_value=2e-73) | Symbols: NDPK2, NDPK1A, NDPK IA IA, NDPK IA, ATNDPK2 | nucleoside diphosphate kinase 2 | chr5:25372122-25373838 REVERSE LENGTH=231;; (*ITAG) Solyc06g071960.2.1 (e_value=3e-83) genomic_reference:SL2.40ch06 gene_region:40715662-40718800 transcript_region:SL2.40ch06:40715662..40718800- go_terms:GO:0004550 functional_description:"Nucleoside diphosphate kinase (AHRD V1 **** B9RAM1_RICCO); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0004550 NbS00002287g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|364; (*SWP) sp|Q9S845|GONS3_ARATH (e_value=0.0) GDP-mannose transporter GONST3 OS=Arabidopsis thaliana GN=GONST3 PE=2 SV=1;; (*TAIR) AT1G76340.1 (e_value=0.0) | Symbols: GONST3 | golgi nucleotide sugar transporter 3 | chr1:28635188-28636306 REVERSE LENGTH=372;; (*ITAG) Solyc06g071950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40714305-40715258 transcript_region:SL2.40ch06:40714305..40715258+ functional_description:"At5g19980 (Fragment) (AHRD V1 ***- Q84L08_ARATH)"; NbS00002287g0003.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|529; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=3e-26) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT3G28580.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:10715736-10717238 FORWARD LENGTH=500;; (*ITAG) Solyc05g007470.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2038021-2039981 transcript_region:SL2.40ch05:2038021..2039981+ go_terms:GO:0016887 functional_description:"AAA-ATPase (AHRD V1 **-* C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00007336g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|345; (*SWP) sp|Q08296|PPOF_SOLLC (e_value=1e-129) Polyphenol oxidase F, chloroplastic OS=Solanum lycopersicum PE=3 SV=1;; (*ITAG) Solyc08g074650.2.1 (e_value=1e-117) genomic_reference:SL2.40ch08 gene_region:55950288-55952114 transcript_region:SL2.40ch08:55950288..55952114- go_terms:GO:0008152 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR002227 Tyrosinase "; GO:0008152 NbS00007336g0006.1 protein AED:0.17 eAED:0.17 QI:780|0.75|0.82|0.88|0.75|0.70|17|342|697; (*SWP) sp|Q54IL5|UGT52_DICDI (e_value=2e-64) UDP-sugar-dependent glycosyltransferase 52 OS=Dictyostelium discoideum GN=ugt52 PE=2 SV=1;; (*TAIR) AT1G43620.3 (e_value=0.0) | Symbols: UGT80B1 | UDP-Glycosyltransferase superfamily protein | chr1:16425654-16429500 REVERSE LENGTH=615;; (*ITAG) Solyc04g071540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56116098-56126810 transcript_region:SL2.40ch04:56116098..56126810+ go_terms:GO:0016906 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 **** B6SKE1_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0016906 NbS00014660g0003.1 protein AED:0.02 eAED:0.02 QI:1180|0.8|0.66|1|1|1|6|526|677; (*TAIR) AT1G36990.1 (e_value=8e-16) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581;; (*ITAG) Solyc01g104540.2.1 (e_value=5e-122) genomic_reference:SL2.40ch01 gene_region:84760416-84766136 transcript_region:SL2.40ch01:84760416..84766136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031720g0011.1 protein AED:0.00 eAED:0.00 QI:203|1|0.66|1|0.5|0.66|3|0|419; (*TAIR) AT2G23060.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:9812839-9814633 REVERSE LENGTH=413;; (*ITAG) Solyc02g092490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48123158-48125698 transcript_region:SL2.40ch02:48123158..48125698- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q7EYF5_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00009811g0002.1 protein AED:0.19 eAED:0.19 QI:287|1|1|1|0|0|3|168|71 NbS00009811g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|106 NbS00018885g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|129 NbS00018885g0006.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.5|1|1|2|0|70 NbS00018885g0008.1 protein AED:0.73 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|94 NbS00018885g0010.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0|0|2|0|138; (*ITAG) Solyc03g116270.2.1 (e_value=3e-33) genomic_reference:SL2.40ch03 gene_region:59818699-59820103 transcript_region:SL2.40ch03:59818699..59820103+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 8 (AHRD V1 **** G2OX8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00045996g0004.1 protein AED:0.33 eAED:0.35 QI:39|0.8|0.5|1|1|1|6|0|389; (*SWP) sp|P35684|RL3_ORYSJ (e_value=0.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G61580.1 (e_value=0.0) | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720833-22722402 REVERSE LENGTH=390;; (*ITAG) Solyc01g103510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83859723-83864398 transcript_region:SL2.40ch01:83859723..83864398- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3-like (AHRD V1 ***- Q2VCJ2_SOLTU); contains Interpro domain(s) IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00019537g0006.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|68 NbS00019537g0010.1 protein AED:0.19 eAED:0.19 QI:192|1|1|1|0.62|0.77|9|266|568; (*SWP) sp|Q4FE47|XB35_ARATH (e_value=4e-106) Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1;; (*TAIR) AT3G23280.2 (e_value=8e-113) | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis thaliana | chr3:8321588-8324109 FORWARD LENGTH=438;; (*ITAG) Solyc06g008500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2391924-2399431 transcript_region:SL2.40ch06:2391924..2399431- go_terms:GO:0008270 functional_description:"Ankyrin repeat-containing protein (AHRD V1 *-*- D2Y4N3_TOBAC); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00019537g0009.1 protein AED:0.03 eAED:0.03 QI:161|1|0.75|1|0.66|0.75|4|0|292; (*SWP) sp|Q84TE6|NAC22_ARATH (e_value=1e-64) NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2;; (*TAIR) AT4G28530.1 (e_value=6e-91) | Symbols: anac074, NAC074 | NAC domain containing protein 74 | chr4:14090725-14094603 REVERSE LENGTH=352;; (*ITAG) Solyc06g008360.2.1 (e_value=2e-154) genomic_reference:SL2.40ch06 gene_region:2253973-2260316 transcript_region:SL2.40ch06:2253973..2260316+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GRP6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00025060g0003.1 protein AED:0.16 eAED:0.16 QI:311|1|0.5|1|1|1|2|0|299; (*TAIR) AT3G15115.1 (e_value=4e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53180.1); Has 47 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:5086219-5087352 REVERSE LENGTH=339;; (*ITAG) Solyc07g062740.2.1 (e_value=3e-120) genomic_reference:SL2.40ch07 gene_region:62659720-62662289 transcript_region:SL2.40ch07:62659720..62662289- functional_description:"Unknown Protein (AHRD V1)"; NbS00030289g0011.1 protein AED:0.04 eAED:0.05 QI:0|1|0.5|1|1|1|2|258|642; (*SWP) sp|Q3E991|Y5269_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4;; (*TAIR) AT3G42880.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633;; (*ITAG) Solyc12g009190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2481771-2484251 transcript_region:SL2.40ch12:2481771..2484251- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00030289g0014.1 protein AED:0.15 eAED:0.15 QI:179|0.25|0.4|0.8|0.5|0.4|5|0|210; (*SWP) sp|P13869|CB12_PETHY (e_value=2e-84) Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1;; (*TAIR) AT1G19150.1 (e_value=6e-114) | Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270;; (*ITAG) Solyc12g009200.1.1 (e_value=5e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2485058-2487651 transcript_region:SL2.40ch12:2485058..2487651- go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 ***- CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00030289g0017.1 protein AED:0.27 eAED:0.27 QI:0|0.77|0.6|1|1|1|10|0|381; (*SWP) sp|P23381|SYWC_HUMAN (e_value=2e-157) Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2;; (*TAIR) AT3G04600.3 (e_value=0.0) | Symbols: | Nucleotidylyl transferase superfamily protein | chr3:1243152-1245958 FORWARD LENGTH=402;; (*ITAG) Solyc08g074410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55693755-55701940 transcript_region:SL2.40ch08:55693755..55701940+ go_terms:GO:0005515,GO:0004830 functional_description:"Tryptophanyl-tRNA synthetase (AHRD V1 **** B6T773_MAIZE); contains Interpro domain(s) IPR002306 Tryptophanyl-tRNA synthetase, class Ib "; GO:0005515,GO:0004830 NbS00030289g0016.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|0.66|3|0|194; (*TAIR) AT1G19130.1 (e_value=7e-95) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | chr1:6609545-6610555 REVERSE LENGTH=192;; (*ITAG) Solyc12g009180.1.1 (e_value=7e-132) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2477766-2480583 transcript_region:SL2.40ch12:2477766..2480583- functional_description:"Cupin superfamily (DUF985) (AHRD V1 ***- D9YHB2_9DELT); contains Interpro domain(s) IPR009327 Protein of unknown function DUF985 "; NbS00041386g0010.1 protein AED:0.15 eAED:0.15 QI:502|1|1|1|1|1|6|318|312; (*SWP) sp|A2Z7B3|GME1_ORYSI (e_value=0.0) GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1;; (*TAIR) AT5G28840.2 (e_value=0.0) | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377;; (*ITAG) Solyc01g097340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79999429-80002633 transcript_region:SL2.40ch01:79999429..80002633+ go_terms:GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase family protein-like protein (AHRD V1 ***- Q2XPW6_SOLTU); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00041386g0015.1 protein AED:0.23 eAED:0.25 QI:0|0.66|0.42|1|0.5|0.57|7|0|480; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=6e-123) Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2;; (*TAIR) AT5G28770.2 (e_value=1e-60) | Symbols: BZO2H3 | bZIP transcription factor family protein | chr5:10796648-10798147 REVERSE LENGTH=314;; (*ITAG) Solyc01g097330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79990166-79995989 transcript_region:SL2.40ch01:79990166..79995989+ go_terms:GO:0046982,GO:0003677 functional_description:"Opaque 2 (Fragment) (AHRD V1 *--- Q84YB2_ZEAPE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0003677 NbS00041386g0011.1 protein AED:0.28 eAED:0.28 QI:76|1|0.75|1|0.66|1|4|0|328; (*TAIR) AT5G28830.1 (e_value=4e-107) | Symbols: | calcium-binding EF hand family protein | chr5:10856801-10858394 FORWARD LENGTH=324;; (*ITAG) Solyc01g097350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80004734-80009186 transcript_region:SL2.40ch01:80004734..80009186- functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7M6Y9_ARALY)"; NbS00021263g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|4|0|246; (*SWP) sp|P07506|COX1_SOYBN (e_value=3e-133) Cytochrome c oxidase subunit 1 OS=Glycine max GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=6e-130) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=4e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00021263g0007.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.66|1|1|3|0|121; (*ITAG) ATMG00570.1 (e_value=5e-13) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc05g023970.1.1 (e_value=6e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:30154180-30154559 transcript_region:SL2.40ch05:30154180..30154559+ functional_description:"Transport membrane protein (Fragment) (AHRD V1 **-- D7RMX4_SILLA)"; NbS00022643g0006.1 protein AED:0.01 eAED:0.01 QI:501|0|0.66|0.66|1|1|3|976|128 NbS00022643g0003.1 protein AED:0.38 eAED:0.38 QI:0|0.4|0.16|0.66|1|1|6|0|178; (*SWP) sp|Q7DLR9|PSB4_ARATH (e_value=2e-97) Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2;; (*TAIR) AT1G56450.1 (e_value=1e-98) | Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246;; (*ITAG) Solyc11g069150.1.1 (e_value=3e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50834495-50838333 transcript_region:SL2.40ch11:50834495..50838333- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9IKM7_POPTR); contains Interpro domain(s) IPR016295 Proteasome endopeptidase complex, beta subunit "; GO:0005839 NbS00019394g0008.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0.5|2|0|261; (*TAIR) AT5G42680.2 (e_value=1e-97) | Symbols: | Protein of unknown function, DUF617 | chr5:17114640-17115356 FORWARD LENGTH=238;; (*ITAG) Solyc12g088930.1.1 (e_value=4e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62564010-62564834 transcript_region:SL2.40ch12:62564010..62564834+ functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U390_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00019394g0004.1 protein AED:0.26 eAED:0.26 QI:560|0.85|0.87|1|0.42|0.25|8|0|507; (*SWP) sp|Q9LJ64|PLRX1_ARATH (e_value=6e-157) Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1;; (*TAIR) AT3G19020.1 (e_value=4e-158) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6559174-6562044 REVERSE LENGTH=956;; (*ITAG) Solyc12g088950.1.1 (e_value=1e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62573865-62576020 transcript_region:SL2.40ch12:62573865..62576020- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00061029g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|396; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=4e-40) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT5G10770.1 (e_value=1e-60) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474;; (*ITAG) Solyc08g068860.2.1 (e_value=9e-131) genomic_reference:SL2.40ch08 gene_region:55144723-55147163 transcript_region:SL2.40ch08:55144723..55147163- go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JAB4_ORYCO); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00007017g0015.1 protein AED:0.08 eAED:0.08 QI:72|1|1|1|0.62|0.66|9|1077|261; (*SWP) sp|Q2PS26|ULP1D_ARATH (e_value=6e-100) Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1;; (*TAIR) AT1G60220.1 (e_value=4e-101) | Symbols: OTS1, ULP1D | UB-like protease 1D | chr1:22208332-22211910 FORWARD LENGTH=584;; (*ITAG) Solyc04g026200.2.1 (e_value=1e-162) genomic_reference:SL2.40ch04 gene_region:25106257-25136392 transcript_region:SL2.40ch04:25106257..25136392+ go_terms:GO:0016929 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-** B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbS00007017g0004.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|136; (*TAIR) AT1G23530.1 (e_value=3e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70470.1); Has 38 Blast hits to 38 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:8345861-8346430 FORWARD LENGTH=189;; (*ITAG) Solyc04g026250.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:25294639-25295031 transcript_region:SL2.40ch04:25294639..25295031- functional_description:"Unknown Protein (AHRD V1)"; NbS00007017g0016.1 protein AED:0.00 eAED:0.00 QI:66|1|1|1|1|1|3|182|314; (*SWP) sp|Q60V51|LE767_CAEBR (e_value=6e-59) Putative steroid dehydrogenase let-767 OS=Caenorhabditis briggsae GN=let-767 PE=3 SV=1;; (*TAIR) AT1G67730.1 (e_value=6e-119) | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318;; (*ITAG) Solyc02g093640.2.1 (e_value=9e-122) genomic_reference:SL2.40ch02 gene_region:49003652-49006247 transcript_region:SL2.40ch02:49003652..49006247- go_terms:GO:0045703 functional_description:"3-ketoacyl-CoA reductase 1 (AHRD V1 **-- Q0VH88_GOSHI); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0045703 NbS00042945g0001.1 protein AED:0.40 eAED:0.40 QI:0|0.71|0.75|1|1|1|8|207|276; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-45) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G65380.1 (e_value=2e-110) | Symbols: | MATE efflux family protein | chr5:26123241-26126352 REVERSE LENGTH=486;; (*ITAG) Solyc11g010380.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3451737-3457412 transcript_region:SL2.40ch11:3451737..3457412- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7MN36_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00000549g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.4|0.8|0|0.2|5|0|378; (*SWP) sp|O82291|PAP3_ARATH (e_value=3e-110) Probable plastid-lipid-associated protein 3, chloroplastic OS=Arabidopsis thaliana GN=PAP3 PE=1 SV=1;; (*TAIR) AT2G35490.1 (e_value=2e-111) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376;; (*ITAG) Solyc08g076480.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57653458-57656810 transcript_region:SL2.40ch08:57653458..57656810+ go_terms:GO:0009507 functional_description:"Plastid lipid-associated protein 3, chloroplastic (AHRD V1 **-- PAP3_BRACM); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00000549g0002.1 protein AED:0.19 eAED:0.19 QI:0|0.6|0.83|1|1|1|6|767|609; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=6e-119) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.1 (e_value=5e-120) | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615894 FORWARD LENGTH=589;; (*ITAG) Solyc08g076420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57594964-57603672 transcript_region:SL2.40ch08:57594964..57603672- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00044545g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|175; (*TAIR) AT3G12650.1 (e_value=3e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4017881-4018597 REVERSE LENGTH=238;; (*ITAG) Solyc03g115460.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59213018-59213797 transcript_region:SL2.40ch03:59213018..59213797+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003603g0005.1 protein AED:0.00 eAED:0.00 QI:252|1|1|1|0.5|0.33|3|374|134 NbS00003603g0017.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|292; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-42) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=6e-77) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc08g079720.2.1 (e_value=4e-137) genomic_reference:SL2.40ch08 gene_region:60369075-60370198 transcript_region:SL2.40ch08:60369075..60370198- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00003603g0016.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|196; (*ITAG) Solyc01g056950.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00003603g0006.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|166; (*SWP) sp|Q6NNI8|SAP1_ARATH (e_value=9e-48) Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1;; (*TAIR) AT1G12440.2 (e_value=7e-49) | Symbols: | A20/AN1-like zinc finger family protein | chr1:4241816-4242322 REVERSE LENGTH=168;; (*ITAG) Solyc08g079700.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:60343880-60344377 transcript_region:SL2.40ch08:60343880..60344377+ go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AHRD V1 ***- SAP7_ARATH); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00003603g0020.1 protein AED:0.21 eAED:0.23 QI:193|0.88|0.66|1|0.64|0.66|18|0|916; (*SWP) sp|Q9FZ06|ARK3_ARATH (e_value=0.0) Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1;; (*TAIR) AT1G12430.1 (e_value=0.0) | Symbols: PAK, ARK3 | armadillo repeat kinesin 3 | chr1:4234122-4238552 REVERSE LENGTH=919;; (*ITAG) Solyc08g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60352611-60364478 transcript_region:SL2.40ch08:60352611..60364478+ go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2W5Y5_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00003603g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc07g042790.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53607997-53618970 transcript_region:SL2.40ch07:53607997..53618970+ functional_description:"Helicase-like protein (AHRD V1 ***- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00003603g0023.1 protein AED:0.45 eAED:0.46 QI:0|0|0.14|0.71|0.16|0.28|7|0|242; (*ITAG) Solyc01g017840.1.1 (e_value=4e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25767392-25769612 transcript_region:SL2.40ch01:25767392..25769612+ functional_description:"subunit of replication protein A (AHRD V1 *-*- A6BLP0_IPONI); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like "; NbS00058945g0008.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0|1|0.25|0|5|0|799; (*SWP) sp|Q9LMJ1|CHX14_ARATH (e_value=0.0) Cation/H(+) antiporter 14 OS=Arabidopsis thaliana GN=CHX14 PE=2 SV=1;; (*TAIR) AT1G06970.1 (e_value=0.0) | Symbols: CHX14, ATCHX14 | cation/hydrogen exchanger 14 | chr1:2138109-2140818 FORWARD LENGTH=829;; (*ITAG) Solyc06g082230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44432943-44435972 transcript_region:SL2.40ch06:44432943..44435972+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 14 (AHRD V1 **** CHX14_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00058945g0001.1 protein AED:0.25 eAED:0.26 QI:0|0.8|0.5|1|1|1|6|0|457; (*TAIR) AT5G58470.2 (e_value=1e-51) | Symbols: TAF15b | TBP-associated factor 15B | chr5:23638566-23640854 REVERSE LENGTH=422;; (*ITAG) Solyc06g082220.2.1 (e_value=7e-95) genomic_reference:SL2.40ch06 gene_region:44426967-44431355 transcript_region:SL2.40ch06:44426967..44431355+ go_terms:GO:0003676,GO:0000166 functional_description:"HIV-1 Tat specific factor 1 (Fragment) (AHRD V1 *--- Q5H918_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00009722g0008.1 protein AED:0.15 eAED:0.15 QI:59|0.75|0.70|1|0.68|0.76|17|351|838; (*SWP) sp|Q5YDB5|CPL2_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3;; (*TAIR) AT5G01270.1 (e_value=0.0) | Symbols: CPL2, ATCPL2 | carboxyl-terminal domain (ctd) phosphatase-like 2 | chr5:108163-112143 REVERSE LENGTH=770;; (*ITAG) Solyc09g014440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6049484-6059985 transcript_region:SL2.40ch09:6049484..6059985- go_terms:GO:0004647,GO:0019204 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 2 (AHRD V1 **** CPL2_ARATH); contains Interpro domain(s) IPR004274 NLI interacting factor "; GO:0004647,GO:0019204 NbS00009722g0007.1 protein AED:0.09 eAED:0.10 QI:129|1|0.8|1|1|1|5|0|422; (*TAIR) AT5G01260.2 (e_value=3e-48) | Symbols: | Carbohydrate-binding-like fold | chr5:105367-107045 FORWARD LENGTH=385;; (*ITAG) Solyc09g014400.2.1 (e_value=7e-165) genomic_reference:SL2.40ch09 gene_region:6028037-6031223 transcript_region:SL2.40ch09:6028037..6031223+ go_terms:GO:0030246,GO:0005975 functional_description:"Alpha-amylase (AHRD V1 *--- B9LEH8_CHLSY); contains Interpro domain(s) IPR002044 Glycoside hydrolase, carbohydrate-binding "; GO:0030246,GO:0005975 NbS00002587g0008.1 protein AED:0.12 eAED:0.12 QI:293|0.5|0.33|1|0.5|0.33|3|426|656; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=4e-160) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=3e-161) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc07g005170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:172887-174857 transcript_region:SL2.40ch07:172887..174857- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002587g0006.1 protein AED:0.19 eAED:0.19 QI:604|1|1|1|0.4|0.54|11|229|366; (*SWP) sp|Q2TA14|PCP_BOVIN (e_value=4e-102) Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1;; (*TAIR) AT2G24280.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc07g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:182494-187318 transcript_region:SL2.40ch07:182494..187318- go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00002587g0012.1 protein AED:0.42 eAED:0.50 QI:0|0.2|0.33|1|1|1|6|156|209; (*TAIR) AT2G24290.1 (e_value=5e-74) | Symbols: | Protein of unknown function (DUF1068) | chr2:10338779-10339859 FORWARD LENGTH=173;; (*ITAG) Solyc07g005180.2.1 (e_value=2e-107) genomic_reference:SL2.40ch07 gene_region:176824-181975 transcript_region:SL2.40ch07:176824..181975- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00045092g0002.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|187; (*ITAG) Solyc02g031990.1.1 (e_value=9e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:17967127-17967675 transcript_region:SL2.40ch02:17967127..17967675+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045092g0003.1 protein AED:0.40 eAED:0.50 QI:0|0|0|1|0|0|2|0|100; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-38) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=4e-17) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc02g011830.1.1 (e_value=3e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4989079-4989282 transcript_region:SL2.40ch02:4989079..4989282- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- B2XWI7_FAGEA)"; NbS00006900g0014.1 protein AED:0.21 eAED:0.21 QI:371|1|1|1|1|1|2|561|217; (*SWP) sp|Q40521|RB11B_TOBAC (e_value=1e-150) Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1;; (*TAIR) AT5G60860.1 (e_value=3e-137) | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1F | chr5:24484750-24485565 FORWARD LENGTH=217;; (*ITAG) Solyc12g014080.1.1 (e_value=6e-151) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4894053-4896737 transcript_region:SL2.40ch12:4894053..4896737- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00006900g0013.1 protein AED:0.34 eAED:0.34 QI:0|0.62|0.55|0.88|0.62|0.88|9|34|380; (*SWP) sp|Q9C5J6|IPT9_ARATH (e_value=4e-96) tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1;; (*TAIR) AT5G20040.2 (e_value=3e-97) | Symbols: ATIPT9, IPT9 | isopentenyltransferase 9 | chr5:6767939-6770980 REVERSE LENGTH=459;; (*ITAG) Solyc12g014190.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5034317-5040335 transcript_region:SL2.40ch12:5034317..5040335- go_terms:GO:0008033 functional_description:"tRNA dimethylallyltransferase (AHRD V1 ***- D6YRN6_WADCW); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0008033 NbS00006900g0016.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0|2|0|396; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=3e-29) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT1G45616.1 (e_value=6e-39) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc07g005150.1.1 (e_value=3e-150) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00000887g0012.1 protein AED:0.09 eAED:0.09 QI:158|0.8|0.66|1|0.4|0.33|6|0|761; (*SWP) sp|Q9M3B6|PKP4_ARATH (e_value=0.0) Plastidial pyruvate kinase 4, chloroplastic OS=Arabidopsis thaliana GN=PKP4 PE=2 SV=1;; (*TAIR) AT3G49160.1 (e_value=0.0) | Symbols: | pyruvate kinase family protein | chr3:18222132-18224415 REVERSE LENGTH=710;; (*ITAG) Solyc06g051930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32087235-32092835 transcript_region:SL2.40ch06:32087235..32092835- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase family protein (AHRD V1 ***- D7LSF1_ARALY); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00024103g0001.1 protein AED:0.36 eAED:0.36 QI:25|1|1|1|1|1|2|425|126; (*SWP) sp|Q93Z92|RING4_ARATH (e_value=3e-20) E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1;; (*TAIR) AT4G32600.1 (e_value=7e-49) | Symbols: | RING/U-box superfamily protein | chr4:15724010-15725737 FORWARD LENGTH=453;; (*ITAG) Solyc08g067770.2.1 (e_value=2e-74) genomic_reference:SL2.40ch08 gene_region:54003474-54009576 transcript_region:SL2.40ch08:54003474..54009576+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024410g0004.1 protein AED:0.06 eAED:0.06 QI:144|1|0.8|1|0.5|0.4|5|0|253; (*SWP) sp|O82314|U082_ARATH (e_value=3e-85) Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana GN=At2g25830 PE=2 SV=2;; (*TAIR) AT2G25830.1 (e_value=2e-86) | Symbols: | YebC-related | chr2:11019091-11021665 REVERSE LENGTH=331;; (*ITAG) Solyc08g066640.2.1 (e_value=2e-128) genomic_reference:SL2.40ch08 gene_region:52611681-52619230 transcript_region:SL2.40ch08:52611681..52619230+ go_terms:GO:0005515 functional_description:"UPF0082 protein yeeN (AHRD V1 **-- YEEN_SALPA); contains Interpro domain(s) IPR002876 Protein of unknown function DUF28 "; GO:0005515 NbS00025913g0013.1 protein AED:0.12 eAED:0.19 QI:0|0.33|0.1|1|0.22|0.4|10|0|1083; (*TAIR) AT5G64420.1 (e_value=0.0) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00025913g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|613; (*SWP) sp|Q7Y214|GTE7_ARATH (e_value=2e-94) Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1;; (*TAIR) AT5G65630.1 (e_value=2e-95) | Symbols: GTE7 | global transcription factor group E7 | chr5:26226311-26228257 REVERSE LENGTH=590;; (*ITAG) Solyc01g106280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85985054-85987923 transcript_region:SL2.40ch01:85985054..85987923- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *--* D7KG11_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00025913g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|0.66|0|0.33|3|0|82 NbS00010759g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.2|1|1|5|0|250; (*SWP) sp|P16148|PLZ12_LUPPO (e_value=1e-65) Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1;; (*TAIR) AT5G51570.1 (e_value=1e-63) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:20949511-20951234 FORWARD LENGTH=292;; (*ITAG) Solyc03g007190.2.1 (e_value=4e-67) genomic_reference:SL2.40ch03 gene_region:1764428-1769612 transcript_region:SL2.40ch03:1764428..1769612- go_terms:GO:0005515 functional_description:"SPFH domain / Band 7 family protein (AHRD V1 *--- Q6L4B0_SOLDE); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005515 NbS00010759g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|86 NbS00010759g0004.1 protein AED:0.16 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|74; (*ITAG) Solyc02g090590.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:46723344-46723592 transcript_region:SL2.40ch02:46723344..46723592- functional_description:"Unknown Protein (AHRD V1)"; NbS00034396g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.79|0.68|0.92|0.79|0.76|25|0|1527; (*TAIR) AT1G55350.4 (e_value=0.0) | Symbols: DEK1, ATDEK1 | calpain-type cysteine protease family | chr1:20654463-20664501 REVERSE LENGTH=2151;; (*ITAG) Solyc12g100360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65458539-65483576 transcript_region:SL2.40ch12:65458539..65483576+ go_terms:GO:0006508,GO:0005622 functional_description:"Calpain-like protein (AHRD V1 ***- Q8RVL2_ARATH); contains Interpro domain(s) IPR001300 Peptidase C2, calpain "; GO:0006508,GO:0005622 NbS00057883g0006.1 protein AED:0.18 eAED:0.18 QI:92|1|0|1|1|0.33|3|0|124; (*ITAG) Solyc09g008260.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:1729051-1737560 transcript_region:SL2.40ch09:1729051..1737560+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057883g0005.1 protein AED:0.26 eAED:0.26 QI:78|0|0.5|1|1|1|2|156|42 NbS00025972g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.72|0.58|0.91|0.72|0.83|12|0|628; (*SWP) sp|Q05609|CTR1_ARATH (e_value=9e-83) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G49470.3 (e_value=0.0) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr5:20063616-20068311 FORWARD LENGTH=770;; (*ITAG) Solyc01g059860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61725129-61733391 transcript_region:SL2.40ch01:61725129..61733391- go_terms:GO:0000160,GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7L5X4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0006355,GO:0007165 NbS00044840g0008.1 protein AED:0.31 eAED:0.31 QI:163|0.83|0.71|1|0.66|0.85|7|0|230; (*SWP) sp|Q9SF29|SYP71_ARATH (e_value=1e-97) Syntaxin-71 OS=Arabidopsis thaliana GN=SYP71 PE=1 SV=1;; (*TAIR) AT3G09740.1 (e_value=8e-99) | Symbols: SYP71, ATSYP71 | syntaxin of plants 71 | chr3:2989615-2991354 FORWARD LENGTH=266;; (*ITAG) Solyc10g084210.1.1 (e_value=3e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63171958-63176335 transcript_region:SL2.40ch10:63171958..63176335- go_terms:GO:0016020 functional_description:"Syntaxin-71 (AHRD V1 ***- C0L7E7_ANNCH); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0016020 NbS00001058g0004.1 protein AED:0.09 eAED:0.09 QI:222|0.85|1|1|0.85|0.75|8|86|613; (*TAIR) AT3G13600.1 (e_value=0.0) | Symbols: | calmodulin-binding family protein | chr3:4445102-4447383 FORWARD LENGTH=605;; (*ITAG) Solyc01g005800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:512638-515352 transcript_region:SL2.40ch01:512638..515352- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 *--* B6U0B7_MAIZE)"; GO:0005516 NbS00005785g0013.1 protein AED:0.08 eAED:0.08 QI:46|1|0.66|1|0|0|3|0|107; (*SWP) sp|Q9NG98|TOP3A_DROME (e_value=3e-22) DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha PE=2 SV=2;; (*TAIR) AT5G63920.1 (e_value=2e-48) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926;; (*ITAG) Solyc05g014740.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8877537-8884992 transcript_region:SL2.40ch05:8877537..8884992- go_terms:GO:0005694 functional_description:"DNA topoisomerase (AHRD V1 *-*- B9H4K8_POPTR); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0005694 NbS00005785g0009.1 protein AED:0.33 eAED:0.33 QI:11|0.5|0.66|0.66|0.5|0.33|3|23|47 NbS00005785g0014.1 protein AED:0.19 eAED:0.36 QI:0|0.5|0.44|0.77|0.25|0.44|9|0|254; (*SWP) sp|O70157|TOP3A_MOUSE (e_value=1e-32) DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1;; (*TAIR) AT5G63920.1 (e_value=7e-91) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926;; (*ITAG) Solyc05g014730.1.1 (e_value=5e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8869485-8876960 transcript_region:SL2.40ch05:8869485..8876960- go_terms:GO:0005694 functional_description:"DNA topoisomerase (AHRD V1 ***- B9H4K8_POPTR); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0005694 NbS00033675g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|3|657|249; (*SWP) sp|Q9C554|EXPA1_ARATH (e_value=3e-93) Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1;; (*TAIR) AT1G69530.2 (e_value=3e-94) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143051 FORWARD LENGTH=250;; (*ITAG) Solyc05g007830.2.1 (e_value=9e-105) genomic_reference:SL2.40ch05 gene_region:2281207-2283177 transcript_region:SL2.40ch05:2281207..2283177+ go_terms:GO:0005199 functional_description:"Expansin 2 (AHRD V1 ***- Q9FUM2_PRUAV); contains Interpro domain(s) IPR002963 Expansin "; GO:0005199 NbS00033675g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|197; (*SWP) sp|Q93Z27|CML45_ARATH (e_value=3e-26) Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1;; (*TAIR) AT5G39670.1 (e_value=2e-27) | Symbols: | Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204;; (*ITAG) Solyc02g088090.1.1 (e_value=1e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44857193-44857738 transcript_region:SL2.40ch02:44857193..44857738+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00033675g0013.1 protein AED:0.20 eAED:0.20 QI:278|0.5|0.33|0.66|0.5|0.66|3|131|38 NbS00033675g0008.1 protein AED:0.02 eAED:0.02 QI:66|1|0.5|1|1|1|2|0|139; (*ITAG) Solyc03g044840.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00014873g0019.1 protein AED:0.03 eAED:0.03 QI:85|0.8|0.83|1|0.6|0.83|6|40|256; (*TAIR) AT5G27730.1 (e_value=6e-70) | Symbols: | Protein of unknown function (DUF1624) | chr5:9820311-9822868 FORWARD LENGTH=472;; (*ITAG) Solyc01g099750.2.1 (e_value=3e-96) genomic_reference:SL2.40ch01 gene_region:81661020-81665918 transcript_region:SL2.40ch01:81661020..81665918+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00014873g0017.1 protein AED:0.19 eAED:0.19 QI:77|1|1|1|0.83|0.85|7|59|341; (*TAIR) AT5G27710.1 (e_value=5e-144) | Symbols: | unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:9813069-9815018 FORWARD LENGTH=335;; (*ITAG) Solyc01g099700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81626226-81632773 transcript_region:SL2.40ch01:81626226..81632773+ functional_description:"Os07g0673000 protein (Fragment) (AHRD V1 ***- Q0D3Q5_ORYSJ)"; NbS00014873g0016.1 protein AED:0.21 eAED:0.21 QI:198|1|1|1|0.66|0.85|7|29|471; (*SWP) sp|Q6IV77|TAZ_MACMU (e_value=4e-44) Tafazzin OS=Macaca mulatta GN=TAZ PE=2 SV=1;; (*TAIR) AT3G05510.1 (e_value=2e-173) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr3:1595576-1598074 FORWARD LENGTH=448;; (*ITAG) Solyc01g099710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81633557-81636870 transcript_region:SL2.40ch01:81633557..81636870+ go_terms:GO:0008152 functional_description:"Tafazzin (AHRD V1 *-*- Q6PUS0_DANRE); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0008152 NbS00014873g0014.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.85|0.85|1|1|7|397|172; (*SWP) sp|Q43582|LSM4_TOBAC (e_value=2e-72) Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G27720.1 (e_value=5e-61) | Symbols: emb1644 | Small nuclear ribonucleoprotein family protein | chr5:9815904-9817304 FORWARD LENGTH=129;; (*ITAG) Solyc01g099740.2.1 (e_value=6e-69) genomic_reference:SL2.40ch01 gene_region:81647861-81661025 transcript_region:SL2.40ch01:81647861..81661025+ functional_description:"Small nuclear ribonucleoprotein sm (AHRD V1 *--- Q17AC0_AEDAE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00014873g0015.1 protein AED:0.25 eAED:0.25 QI:77|1|1|1|0.7|0.72|11|708|310; (*SWP) sp|O82631|CAPZA_ARATH (e_value=9e-165) F-actin-capping protein subunit alpha OS=Arabidopsis thaliana GN=At3g05520 PE=2 SV=2;; (*TAIR) AT3G05520.1 (e_value=6e-166) | Symbols: | Subunits of heterodimeric actin filament capping protein Capz superfamily | chr3:1598611-1601134 FORWARD LENGTH=308;; (*ITAG) Solyc01g099720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81637724-81646326 transcript_region:SL2.40ch01:81637724..81646326+ go_terms:GO:0003779 functional_description:"Alpha subunit of F-actin capping protein (AHRD V1 **** D7L3V5_ARALY); contains Interpro domain(s) IPR018315 F-actin capping protein, alpha subunit, actin binding "; GO:0003779 NbS00014873g0024.1 protein AED:0.26 eAED:0.26 QI:148|0.7|0.90|1|0.9|0.81|11|583|415; (*SWP) sp|Q8L770|CLPR3_ARATH (e_value=2e-163) ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1;; (*TAIR) AT1G09130.2 (e_value=2e-164) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2940063-2942217 REVERSE LENGTH=330;; (*ITAG) Solyc01g099690.2.1 (e_value=1e-178) genomic_reference:SL2.40ch01 gene_region:81616423-81624919 transcript_region:SL2.40ch01:81616423..81624919+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- B9RFA9_RICCO); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00017181g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.71|1|0.83|0.85|7|419|331; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=7e-36) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G40240.1 (e_value=1e-58) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:16082325-16084466 REVERSE LENGTH=368;; (*ITAG) Solyc02g087050.2.1 (e_value=1e-161) genomic_reference:SL2.40ch02 gene_region:44163113-44166397 transcript_region:SL2.40ch02:44163113..44166397+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7MJA5_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00049745g0010.1 protein AED:0.37 eAED:0.37 QI:0|0|0.25|0.75|0|0.5|4|479|113; (*SWP) sp|Q84Y95|GRS14_ARATH (e_value=5e-52) Monothiol glutaredoxin-S14, chloroplastic OS=Arabidopsis thaliana GN=GRXS14 PE=1 SV=2;; (*TAIR) AT3G54900.1 (e_value=4e-53) | Symbols: CXIP1, ATGRXCP | CAX interacting protein 1 | chr3:20341850-20342371 REVERSE LENGTH=173;; (*ITAG) Solyc02g082200.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:40474471-40478745 transcript_region:SL2.40ch02:40474471..40478745+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- A9LC71_PTEVI); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0045454 NbS00049745g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|0|0|2|0|48 NbS00049745g0009.1 protein AED:0.27 eAED:0.27 QI:0|0.71|0.62|1|0.85|0.87|8|209|542; (*TAIR) AT3G26950.1 (e_value=0.0) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9941202-9943411 REVERSE LENGTH=548;; (*ITAG) Solyc02g082210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40480822-40485201 transcript_region:SL2.40ch02:40480822..40485201- functional_description:"Genomic DNA chromosome 3 P1 clone MOJ10 (AHRD V1 ***- Q9LSE0_ARATH)"; NbS00031038g0009.1 protein AED:0.04 eAED:0.05 QI:0|0.85|0.62|1|0.57|0.62|8|0|474; (*SWP) sp|Q5RBU7|PCP_PONAB (e_value=7e-91) Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1;; (*TAIR) AT5G22860.1 (e_value=3e-169) | Symbols: | Serine carboxypeptidase S28 family protein | chr5:7639511-7642945 REVERSE LENGTH=502;; (*ITAG) Solyc11g066590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49446302-49452689 transcript_region:SL2.40ch11:49446302..49452689+ go_terms:GO:0006508 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-- Q9FLH1_ARATH); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0006508 NbS00031038g0003.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.25|1|1|4|0|94 NbS00031038g0002.1 protein AED:0.79 eAED:0.90 QI:0|0|0|0.22|1|1|9|0|173 NbS00031038g0010.1 protein AED:0.29 eAED:0.55 QI:0|0|0|1|0|0|3|0|97 NbS00031038g0013.1 protein AED:0.51 eAED:0.69 QI:0|0|0|0.66|0|0|3|0|95; (*ITAG) Solyc05g045730.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00035306g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|110; (*ITAG) Solyc11g018570.1.1 (e_value=1e-32) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:8739998-8740713 transcript_region:SL2.40ch11:8739998..8740713- functional_description:"Unknown Protein (AHRD V1)"; NbS00035306g0002.1 protein AED:0.40 eAED:0.40 QI:0|1|0.66|1|1|1|3|0|251; (*SWP) sp|B8EK41|RL25_METSB (e_value=3e-23) 50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1;; (*TAIR) AT4G23620.1 (e_value=2e-114) | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr4:12315016-12316659 REVERSE LENGTH=264;; (*ITAG) Solyc11g018560.1.1 (e_value=7e-146) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8721428-8726834 transcript_region:SL2.40ch11:8721428..8726834+ go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L25 (AHRD V1 ***- D2LIE4_RHOVA); contains Interpro domain(s) IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "; GO:0005840,GO:0006412 NbS00058080g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|253; (*TAIR) AT1G59590.1 (e_value=5e-35) | Symbols: ZCF37 | ZCF37 | chr1:21887860-21888495 FORWARD LENGTH=211;; (*ITAG) Solyc04g077810.1.1 (e_value=2e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60294924-60295664 transcript_region:SL2.40ch04:60294924..60295664+ functional_description:"Unknown Protein (AHRD V1)"; NbC23422795g0001.1 protein AED:0.03 eAED:0.03 QI:67|1|0.5|1|0|0|2|0|23 NbS00003816g0031.1 protein AED:0.19 eAED:0.22 QI:260|0.75|0.77|1|0.62|0.77|9|182|351; (*TAIR) AT5G38380.1 (e_value=2e-138) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:15345660-15348217 FORWARD LENGTH=361;; (*ITAG) Solyc02g086060.2.1 (e_value=6e-86) genomic_reference:SL2.40ch02 gene_region:43426173-43428661 transcript_region:SL2.40ch02:43426173..43428661- functional_description:"cDNA clone 002-113-H04 full insert sequence (AHRD V1 ***- B7EZJ3_ORYSJ)"; NbS00003816g0021.1 protein AED:0.22 eAED:0.22 QI:186|1|1|1|1|1|5|121|439; (*SWP) sp|Q54PA0|MPI_DICDI (e_value=4e-96) Probable mannose-6-phosphate isomerase OS=Dictyostelium discoideum GN=mpi PE=3 SV=1;; (*TAIR) AT3G02570.1 (e_value=8e-179) | Symbols: MEE31, PMI1 | Mannose-6-phosphate isomerase, type I | chr3:543463-545478 REVERSE LENGTH=432;; (*ITAG) Solyc02g086090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43444795-43448837 transcript_region:SL2.40ch02:43444795..43448837- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 1.1"; GO:0004476 NbS00003816g0029.1 protein AED:0.42 eAED:0.42 QI:15|1|0.75|1|0.66|0.5|4|114|97; (*TAIR) AT1G67060.1 (e_value=2e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc02g086110.2.1 (e_value=9e-63) genomic_reference:SL2.40ch02 gene_region:43460933-43465151 transcript_region:SL2.40ch02:43460933..43465151- functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00003816g0003.1 protein AED:0.45 eAED:0.52 QI:0|1|0.5|1|1|1|4|0|75; (*TAIR) AT1G67060.1 (e_value=3e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc03g034250.2.1 (e_value=3e-27) genomic_reference:SL2.40ch03 gene_region:10215436-10222829 transcript_region:SL2.40ch03:10215436..10222829- functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00003816g0024.1 protein AED:0.11 eAED:0.11 QI:0|1|0.8|1|0.75|0.6|5|508|218; (*SWP) sp|F4IQJ2|ELP5_ARATH (e_value=2e-61) Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1 SV=1;; (*TAIR) AT2G18410.1 (e_value=1e-62) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992588 FORWARD LENGTH=374;; (*ITAG) Solyc02g086100.2.1 (e_value=4e-124) genomic_reference:SL2.40ch02 gene_region:43456529-43462769 transcript_region:SL2.40ch02:43456529..43462769+ functional_description:"Dermal papilla-derived protein 6 homolog (AHRD V1 *-*- DERP6_DANRE); contains Interpro domain(s) IPR019519 Histone acetylation protein 2 "; NbS00003816g0023.1 protein AED:0.11 eAED:0.11 QI:427|1|0.75|1|1|1|4|421|264; (*TAIR) AT3G57360.1 (e_value=3e-80) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:21225571-21226621 FORWARD LENGTH=254;; (*ITAG) Solyc10g079310.1.1 (e_value=1e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60188601-60190173 transcript_region:SL2.40ch10:60188601..60190173+ functional_description:"tRNA-splicing endonuclease subunit sen54 (AHRD V1 *-*- B6JWH8_SCHJY)"; NbS00003816g0025.1 protein AED:0.18 eAED:0.18 QI:67|1|0.5|1|1|1|4|0|166; (*SWP) sp|F4IQJ2|ELP5_ARATH (e_value=5e-44) Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1 SV=1;; (*TAIR) AT2G18410.2 (e_value=3e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:7990768-7992203 FORWARD LENGTH=306;; (*ITAG) Solyc02g086100.2.1 (e_value=2e-94) genomic_reference:SL2.40ch02 gene_region:43456529-43462769 transcript_region:SL2.40ch02:43456529..43462769+ functional_description:"Dermal papilla-derived protein 6 homolog (AHRD V1 *-*- DERP6_DANRE); contains Interpro domain(s) IPR019519 Histone acetylation protein 2 "; NbS00003816g0035.1 protein AED:0.27 eAED:0.27 QI:128|0.85|0.75|1|0.71|0.75|8|0|331; (*TAIR) AT5G38360.1 (e_value=2e-104) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:15332289-15333556 REVERSE LENGTH=239;; (*ITAG) Solyc02g086080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43441149-43444197 transcript_region:SL2.40ch02:43441149..43444197+ functional_description:"Alpha/beta hydrolase fold (AHRD V1 ***- A1T9R4_MYCVP); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00003816g0018.1 protein AED:0.45 eAED:0.45 QI:0|0|0.33|1|1|1|3|0|124; (*TAIR) AT1G67080.1 (e_value=1e-17) | Symbols: ABA4 | abscisic acid (aba)-deficient 4 | chr1:25045405-25046681 REVERSE LENGTH=220;; (*ITAG) Solyc02g086050.2.1 (e_value=4e-22) genomic_reference:SL2.40ch02 gene_region:43422137-43425124 transcript_region:SL2.40ch02:43422137..43425124+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00030406g0001.1 protein AED:0.00 eAED:0.02 QI:189|1|0.5|1|0|0.5|2|0|527; (*SWP) sp|Q9SYK1|PPR11_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana GN=At1g05600 PE=2 SV=1;; (*TAIR) AT1G05600.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1672161-1673675 FORWARD LENGTH=504;; (*ITAG) Solyc07g045380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55815203-55820247 transcript_region:SL2.40ch07:55815203..55820247+ go_terms:GO:0016192 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KF62_ARALY); contains Interpro domain(s) IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat "; GO:0016192 NbS00000829g0015.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|248; (*TAIR) AT3G24020.1 (e_value=3e-124) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:8678827-8679558 FORWARD LENGTH=243;; (*ITAG) Solyc12g097090.1.1 (e_value=1e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64071732-64073176 transcript_region:SL2.40ch12:64071732..64073176+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 ***- Q0WPQ6_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00000829g0018.1 protein AED:0.09 eAED:0.15 QI:0|0.7|0.54|1|0.5|0.45|11|0|317; (*SWP) sp|Q13530|SERC3_HUMAN (e_value=9e-20) Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2;; (*TAIR) AT2G33205.1 (e_value=5e-145) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr2:14070987-14073211 REVERSE LENGTH=422;; (*ITAG) Solyc09g091200.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65866538-65869942 transcript_region:SL2.40ch09:65866538..65869942+ go_terms:GO:0016020 functional_description:"Serine incorporator 1 (AHRD V1 **-- B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0016020 NbS00000829g0016.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|216|319; (*SWP) sp|Q811B1|XYLT1_MOUSE (e_value=2e-14) Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1;; (*TAIR) AT3G24040.1 (e_value=1e-144) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:8681118-8683211 REVERSE LENGTH=417;; (*ITAG) Solyc09g091230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65875209-65879093 transcript_region:SL2.40ch09:65875209..65879093+ go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00000829g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|271; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=6e-27) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=5e-28) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc09g091220.1.1 (e_value=5e-106) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65872959-65874155 transcript_region:SL2.40ch09:65872959..65874155- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000829g0021.1 protein AED:0.39 eAED:0.42 QI:0|0.77|0.8|1|0.77|0.8|10|24|319; (*SWP) sp|Q9T0H9|GDT12_ARATH (e_value=7e-144) GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2;; (*TAIR) AT4G13590.1 (e_value=5e-145) | Symbols: | Uncharacterized protein family (UPF0016) | chr4:7901369-7903792 REVERSE LENGTH=359;; (*ITAG) Solyc09g091240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65879330-65885874 transcript_region:SL2.40ch09:65879330..65885874- go_terms:GO:0016020 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9GMI0_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0016020 NbS00019358g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|157; (*TAIR) AT4G04630.1 (e_value=2e-25) | Symbols: | Protein of unknown function, DUF584 | chr4:2332163-2332669 REVERSE LENGTH=168;; (*ITAG) Solyc02g080580.1.1 (e_value=3e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39357037-39357504 transcript_region:SL2.40ch02:39357037..39357504+ functional_description:"Nuclear protein (AHRD V1 *-*- B6U7S5_MAIZE); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00019358g0002.1 protein AED:0.05 eAED:0.05 QI:133|0.8|0.83|1|0|0|6|1474|168 NbS00028218g0004.1 protein AED:0.13 eAED:0.13 QI:320|1|0.92|1|0.75|0.69|13|498|716; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=3e-88) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT1G63700.1 (e_value=0.0) | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily protein | chr1:23625208-23629031 REVERSE LENGTH=883;; (*ITAG) Solyc03g025360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7174598-7181522 transcript_region:SL2.40ch03:7174598..7181522+ go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00016765g0002.1 protein AED:0.08 eAED:0.08 QI:276|1|0.5|1|0|0|2|0|520; (*SWP) sp|Q9SAK4|SSDH_ARATH (e_value=0.0) Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2;; (*TAIR) AT1G79440.1 (e_value=0.0) | Symbols: ALDH5F1, SSADH1, SSADH | aldehyde dehydrogenase 5F1 | chr1:29882525-29887275 REVERSE LENGTH=528;; (*ITAG) Solyc09g090700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:65491141-65492709 transcript_region:SL2.40ch09:65491141..65492709- go_terms:GO:0004777 functional_description:"Succinate semialdehyde dehydrogenase (AHRD V1 **** B6TPI6_MAIZE); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004777 NbS00016765g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.5|0.75|0.66|0.75|4|0|351; (*TAIR) AT4G13330.1 (e_value=6e-134) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:7754248-7755837 REVERSE LENGTH=428;; (*ITAG) Solyc09g090690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65487436-65490341 transcript_region:SL2.40ch09:65487436..65490341- functional_description:"Unknown Protein (AHRD V1)"; NbS00016765g0008.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0|2|0|67 NbS00039821g0001.1 protein AED:0.26 eAED:0.27 QI:444|0.5|0.57|0.85|0.5|0.42|7|0|428; (*SWP) sp|Q9C952|CPSF3_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1;; (*TAIR) AT1G61010.3 (e_value=0.0) | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693;; (*ITAG) Solyc07g049480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57077978-57086643 transcript_region:SL2.40ch07:57077978..57086643+ go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B5X1A0_SALSA); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00049334g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.45|1|0.8|0.72|11|0|1041; (*TAIR) AT2G25660.1 (e_value=0.0) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54091438-54109140 transcript_region:SL2.40ch08:54091438..54109140- functional_description:"Homology to unknown gene (AHRD V1 **-- Q016Y8_OSTTA); contains Interpro domain(s) IPR007452 Protein of unknown function DUF490 "; NbS00049334g0002.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|205; (*SWP) sp|Q9ZR14|Y4317_ARATH (e_value=6e-21) Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1;; (*TAIR) AT4G03170.1 (e_value=5e-22) | Symbols: | AP2/B3-like transcriptional factor family protein | chr4:1400832-1401584 FORWARD LENGTH=250;; (*ITAG) Solyc12g007300.1.1 (e_value=3e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1699431-1700138 transcript_region:SL2.40ch12:1699431..1700138+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g20600 (AHRD V1 *-*- Y1060_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00038438g0008.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|1|1|2|0|132; (*SWP) sp|O81148|PSA4_ARATH (e_value=3e-92) Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1;; (*TAIR) AT3G22110.1 (e_value=2e-93) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=8e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00038438g0009.1 protein AED:0.25 eAED:0.31 QI:0|0.5|0.66|1|0|0|3|0|95; (*ITAG) Solyc08g080840.1.1 (e_value=1e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:61192691-61194635 transcript_region:SL2.40ch08:61192691..61194635+ functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00038438g0010.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|77 NbS00047836g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|190; (*TAIR) AT1G72750.1 (e_value=4e-52) | Symbols: ATTIM23-2, TIM23-2 | translocase inner membrane subunit 23-2 | chr1:27383577-27384143 FORWARD LENGTH=188;; (*ITAG) Solyc03g121860.1.1 (e_value=3e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63956258-63956830 transcript_region:SL2.40ch03:63956258..63956830- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit tim23 (AHRD V1 ***- B6T238_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00047836g0010.1 protein AED:0.28 eAED:0.28 QI:184|1|1|1|0.8|1|6|468|275; (*SWP) sp|F4I7L1|TRB4_ARATH (e_value=7e-61) Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2;; (*TAIR) AT1G17520.1 (e_value=8e-62) | Symbols: | Homeodomain-like/winged-helix DNA-binding family protein | chr1:6024959-6027224 REVERSE LENGTH=296;; (*ITAG) Solyc03g121840.2.1 (e_value=7e-91) genomic_reference:SL2.40ch03 gene_region:63928744-63935288 transcript_region:SL2.40ch03:63928744..63935288- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone H1-like protein (AHRD V1 *-*- Q8W119_MAIZE); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00047836g0015.1 protein AED:0.17 eAED:0.17 QI:273|1|1|1|0.94|0.94|19|533|546; (*SWP) sp|Q8RWN9|OPD22_ARATH (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2;; (*TAIR) AT3G13930.1 (e_value=0.0) | Symbols: | Dihydrolipoamide acetyltransferase, long form protein | chr3:4596240-4600143 FORWARD LENGTH=539;; (*ITAG) Solyc07g006790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1637797-1645252 transcript_region:SL2.40ch07:1637797..1645252+ go_terms:GO:0004742,GO:0005507 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0004742,GO:0005507 NbS00047836g0014.1 protein AED:0.28 eAED:0.28 QI:56|0.85|0.62|1|0.42|0.62|8|0|305; (*SWP) sp|Q8TCB7|METL6_HUMAN (e_value=2e-42) Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2;; (*TAIR) AT2G26200.1 (e_value=1e-67) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11152875-11156330 FORWARD LENGTH=565;; (*ITAG) Solyc03g121870.2.1 (e_value=5e-131) genomic_reference:SL2.40ch03 gene_region:63958575-63961893 transcript_region:SL2.40ch03:63958575..63961893+ go_terms:GO:0004402 functional_description:"Methyltransferase-like protein (AHRD V1 ***- B6K6V3_SCHJY); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0004402 NbS00034386g0006.1 protein AED:0.19 eAED:0.19 QI:261|1|1|1|1|1|6|485|207; (*SWP) sp|Q99728|BARD1_HUMAN (e_value=4e-18) BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1 PE=1 SV=2;; (*TAIR) AT3G09890.1 (e_value=2e-74) | Symbols: | Ankyrin repeat family protein | chr3:3032678-3034158 FORWARD LENGTH=206;; (*ITAG) Solyc09g008450.2.1 (e_value=2e-109) genomic_reference:SL2.40ch09 gene_region:1901483-1905512 transcript_region:SL2.40ch09:1901483..1905512+ go_terms:GO:0005200 functional_description:"Ankyrin repeat domain protein (AHRD V1 **-- C0FAG4_9RICK); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005200 NbS00034386g0007.1 protein AED:0.26 eAED:0.26 QI:322|0.8|1|1|0.8|0.66|6|295|189; (*SWP) sp|O49841|RAC2A_ARATH (e_value=9e-102) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=7e-103) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc09g008460.2.1 (e_value=1e-113) genomic_reference:SL2.40ch09 gene_region:1905656-1911197 transcript_region:SL2.40ch09:1905656..1911197- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00023043g0003.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|107; (*ITAG) Solyc07g056600.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61736549-61736878 transcript_region:SL2.40ch07:61736549..61736878+ functional_description:"Tobacco rattle virus-induced protein variant 2 (AHRD V1 **-- Q5PXT0_ARATH); contains Interpro domain(s) IPR008889 VQ "; NbS00029207g0004.1 protein AED:0.24 eAED:0.25 QI:165|0.8|0.66|1|0.6|0.83|6|0|225; (*SWP) sp|O24150|CAMT3_TOBAC (e_value=2e-158) Caffeoyl-CoA O-methyltransferase 3 OS=Nicotiana tabacum GN=CCOAOMT3 PE=2 SV=2;; (*TAIR) AT4G34050.1 (e_value=1e-137) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc02g093250.2.1 (e_value=9e-157) genomic_reference:SL2.40ch02 gene_region:48750642-48751998 transcript_region:SL2.40ch02:48750642..48751998- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A8IFQ7_SOLLC); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00050383g0010.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0.5|2|201|416; (*SWP) sp|Q94F39|AFP3_ARATH (e_value=9e-37) Ninja-family protein AFP3 OS=Arabidopsis thaliana GN=AFP3 PE=1 SV=1;; (*TAIR) AT3G29575.4 (e_value=7e-38) | Symbols: AFP3 | ABI five binding protein 3 | chr3:11382416-11383657 REVERSE LENGTH=231;; (*ITAG) Solyc04g005380.2.1 (e_value=2e-94) genomic_reference:SL2.40ch04 gene_region:272481-276895 transcript_region:SL2.40ch04:272481..276895+ go_terms:GO:0005515 functional_description:"Ninja-family protein Os03g0214200 (AHRD V1 ***- NNJA1_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; GO:0005515 NbS00011839g0005.1 protein AED:0.51 eAED:0.53 QI:0|0.5|0.28|0.71|0.5|0.42|7|0|204; (*SWP) sp|Q5M755|PAP7_ARATH (e_value=3e-74) Probable plastid-lipid-associated protein 7, chloroplastic OS=Arabidopsis thaliana GN=PAP7 PE=2 SV=1;; (*TAIR) AT5G09820.1 (e_value=1e-75) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr5:3056219-3057380 REVERSE LENGTH=259;; (*ITAG) Solyc11g005340.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:269717-272662 transcript_region:SL2.40ch11:269717..272662- go_terms:GO:0009507 functional_description:"PAP fibrillin family protein (AHRD V1 **-- B5W0K3_SPIMA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00004866g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|195; (*ITAG) Solyc09g073040.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:61206677-61207922 transcript_region:SL2.40ch09:61206677..61207922+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004866g0003.1 protein AED:0.13 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|203; (*ITAG) Solyc09g074040.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61224706-61225332 transcript_region:SL2.40ch09:61224706..61225332+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005011g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|476; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=5e-27) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT2G46620.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491;; (*ITAG) Solyc03g082640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46100818-46102242 transcript_region:SL2.40ch03:46100818..46102242+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00020067g0003.1 protein AED:0.26 eAED:0.49 QI:0|0|0.5|1|0|0|2|186|140 NbS00020067g0002.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.14|1|1|7|0|377; (*ITAG) Solyc12g062880.1.1 (e_value=3e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00020067g0001.1 protein AED:0.27 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|95; (*ITAG) Solyc00g027120.1.1 (e_value=7e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00046962g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc11g063480.1.1 (e_value=3e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00046962g0004.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|0|0.66|3|0|216; (*SWP) sp|Q04716|RT03_PETHY (e_value=9e-51) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=3e-46) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc00g171810.2.1 (e_value=2e-33) genomic_reference:SL2.40ch00 gene_region:18050017-18051583 transcript_region:SL2.40ch00:18050017..18051583- go_terms:GO:0045263 functional_description:"ATP synthase subunit a (AHRD V1 ***- Q45KQ5_CAPAN); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0045263 NbS00043617g0005.1 protein AED:0.12 eAED:0.19 QI:198|0|0|1|1|1|2|0|100; (*TAIR) AT2G23690.1 (e_value=8e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc01g109250.2.1 (e_value=9e-52) genomic_reference:SL2.40ch01 gene_region:88009744-88010619 transcript_region:SL2.40ch01:88009744..88010619+ go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 **-- B6SLK0_MAIZE)"; GO:0005515 NbS00043617g0009.1 protein AED:0.06 eAED:0.06 QI:220|1|1|1|0.88|0.8|10|383|550; (*TAIR) AT5G66600.3 (e_value=3e-121) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26578315 REVERSE LENGTH=614;; (*ITAG) Solyc01g109270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88018018-88020994 transcript_region:SL2.40ch01:88018018..88020994- functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00043617g0008.1 protein AED:0.38 eAED:0.38 QI:133|1|0|1|1|1|2|0|289; (*SWP) sp|Q9XII1|PDV2_ARATH (e_value=2e-58) Plastid division protein PDV2 OS=Arabidopsis thaliana GN=PDV2 PE=1 SV=1;; (*TAIR) AT2G16070.2 (e_value=1e-59) | Symbols: PDV2 | plastid division2 | chr2:6984072-6985356 REVERSE LENGTH=307;; (*ITAG) Solyc01g109260.2.1 (e_value=3e-154) genomic_reference:SL2.40ch01 gene_region:88011651-88016271 transcript_region:SL2.40ch01:88011651..88016271- go_terms:GO:0005515 functional_description:"At2g16070/F7H1.9 (AHRD V1 ***- Q93ZL0_ARATH)"; GO:0005515 NbS00011471g0011.1 protein AED:0.70 eAED:0.90 QI:0|0|0|1|1|1|2|0|133; (*TAIR) AT5G62570.1 (e_value=2e-23) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113920.2.1 (e_value=6e-32) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00011471g0003.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|132 NbS00020684g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|145; (*TAIR) AT2G38500.1 (e_value=5e-19) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:16117610-16119041 REVERSE LENGTH=356; NbS00032307g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.83|0.76|0.92|1|1|13|0|823; (*SWP) sp|Q8VY16|CDP1_ARATH (e_value=0.0) Plastid division protein CDP1, chloroplastic OS=Arabidopsis thaliana GN=CDP1 PE=1 SV=2;; (*TAIR) AT3G19180.1 (e_value=0.0) | Symbols: ARC6H, PARC6, ATCDP1, CDP1 | paralog of ARC6 | chr3:6632810-6636953 FORWARD LENGTH=819;; (*ITAG) Solyc03g098610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54355155-54363385 transcript_region:SL2.40ch03:54355155..54363385- go_terms:GO:0043621 functional_description:"Genomic DNA chromosome 3 P1 clone MVI11 (AHRD V1 **-- Q9LJL2_ARATH)"; GO:0043621 NbS00013252g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.71|0.75|1|0.85|0.87|8|407|263; (*TAIR) AT3G51610.1 (e_value=6e-82) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:19139715-19141986 REVERSE LENGTH=230;; (*ITAG) Solyc03g118520.2.1 (e_value=4e-52) genomic_reference:SL2.40ch03 gene_region:61422856-61423498 transcript_region:SL2.40ch03:61422856..61423498+ functional_description:"Unknown Protein (AHRD V1)"; NbS00051625g0002.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|1|1|2|0|365; (*SWP) sp|Q9SYZ7|U496A_ARATH (e_value=2e-152) UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1 SV=1;; (*TAIR) AT4G34320.1 (e_value=1e-153) | Symbols: | Protein of unknown function (DUF677) | chr4:16422436-16423824 FORWARD LENGTH=374;; (*ITAG) Solyc01g109380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88111929-88113295 transcript_region:SL2.40ch01:88111929..88113295- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00029249g0004.1 protein AED:0.38 eAED:0.39 QI:0|0.5|0.28|0.85|0.83|1|7|0|237; (*TAIR) AT4G39970.1 (e_value=6e-97) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:18536678-18538429 REVERSE LENGTH=316;; (*ITAG) Solyc11g009020.1.1 (e_value=5e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3160364-3163079 transcript_region:SL2.40ch11:3160364..3163079- go_terms:GO:0005515,GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 **** Q10I42_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016787 NbS00041626g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.85|0.86|1|0.78|0.86|15|419|659; (*SWP) sp|Q112K0|SYD_TRIEI (e_value=0.0) Aspartate--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101) GN=aspS PE=3 SV=1;; (*TAIR) AT4G33760.1 (e_value=0.0) | Symbols: | tRNA synthetase class II (D, K and N) family protein | chr4:16189285-16193260 REVERSE LENGTH=664;; (*ITAG) Solyc01g106740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86238959-86250524 transcript_region:SL2.40ch01:86238959..86250524- go_terms:GO:0004815,GO:0005515 functional_description:"Aspartyl-tRNA synthetase (AHRD V1 **** D8FUD3_9CYAN); contains Interpro domain(s) IPR004524 Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type "; GO:0004815,GO:0005515 NbS00027729g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|330; (*SWP) sp|Q9C5D2|FBL4_ARATH (e_value=2e-11) F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1;; (*TAIR) AT5G40470.1 (e_value=2e-75) | Symbols: | RNI-like superfamily protein | chr5:16208255-16209745 REVERSE LENGTH=496;; (*ITAG) Solyc02g086440.2.1 (e_value=2e-98) genomic_reference:SL2.40ch02 gene_region:43683988-43686819 transcript_region:SL2.40ch02:43683988..43686819+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027729g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|0.5|2|824|117; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=6e-20) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G03620.1 (e_value=2e-35) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=3e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00011746g0004.1 protein AED:0.04 eAED:0.04 QI:226|1|1|1|0.83|0.71|7|286|791; (*SWP) sp|Q9LXA8|BXL6_ARATH (e_value=0.0) Probable beta-D-xylosidase 6 OS=Arabidopsis thaliana GN=BXL6 PE=2 SV=1;; (*TAIR) AT5G10560.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:3336335-3339351 REVERSE LENGTH=792;; (*ITAG) Solyc02g091680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47492981-47497119 transcript_region:SL2.40ch02:47492981..47497119- go_terms:GO:0046556,GO:0009044 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0046556,GO:0009044 NbS00010665g0003.1 protein AED:0.22 eAED:0.22 QI:178|0.8|1|1|0.2|0.16|6|582|143; (*SWP) sp|Q8LCA1|TMP14_ARATH (e_value=2e-21) Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2;; (*TAIR) AT1G52220.1 (e_value=1e-36) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=156;; (*ITAG) Solyc06g066620.2.1 (e_value=3e-68) genomic_reference:SL2.40ch06 gene_region:38256435-38259214 transcript_region:SL2.40ch06:38256435..38259214- functional_description:"Threonine endopeptidase (AHRD V1 *--- B6SNJ7_MAIZE)"; NbS00054101g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|457; (*SWP) sp|Q6DYE5|U496K_ARATH (e_value=2e-26) UPF0496 protein At1g20180 OS=Arabidopsis thaliana GN=At1g20180 PE=2 SV=2;; (*TAIR) AT1G20180.1 (e_value=2e-27) | Symbols: | Protein of unknown function (DUF677) | chr1:6996354-6997779 FORWARD LENGTH=390;; (*ITAG) Solyc12g056570.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47872452-47873507 transcript_region:SL2.40ch12:47872452..47873507+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00054101g0004.1 protein AED:0.00 eAED:0.00 QI:24|1|0.5|1|0|0|2|0|306; (*TAIR) AT1G76780.1 (e_value=6e-11) | Symbols: | HSP20-like chaperones superfamily protein | chr1:28816641-28822256 FORWARD LENGTH=1871;; (*ITAG) Solyc04g071490.2.1 (e_value=3e-78) genomic_reference:SL2.40ch04 gene_region:56070977-56072202 transcript_region:SL2.40ch04:56070977..56072202+ functional_description:"Cell envelope integrity inner membrane protein TolA (AHRD V1 *-*- B6TVC4_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00042884g0004.1 protein AED:0.22 eAED:0.22 QI:19|0.66|0.14|1|0.66|0.57|7|0|488; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=1e-32) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=9e-34) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc02g065350.2.1 (e_value=8e-150) genomic_reference:SL2.40ch02 gene_region:31128527-31130662 transcript_region:SL2.40ch02:31128527..31130662+ go_terms:GO:0003700,GO:0016564 functional_description:"B3 domain-containing transcription factor VRN1 (AHRD V1 *-** VRN1_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700,GO:0016564 NbS00059584g0001.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|1|1|3|0|114; (*SWP) sp|P85076|PME_ACTDE (e_value=3e-21) Pectinesterase OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G02810.1 (e_value=1e-16) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc06g009190.2.1 (e_value=2e-24) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00018631g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|327; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=5e-131) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.3 (e_value=4e-56) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc10g079320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60193754-60195241 transcript_region:SL2.40ch10:60193754..60195241- go_terms:GO:0080043,GO:0015020 functional_description:"Glucosyltransferase-5 (AHRD V1 *-** Q8S9A4_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0015020 NbS00033926g0004.1 protein AED:0.05 eAED:0.05 QI:241|1|1|1|0.92|0.85|14|366|502; (*SWP) sp|Q9C9P4|KASC2_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1;; (*TAIR) AT1G74960.3 (e_value=0.0) | Symbols: FAB1 | fatty acid biosynthesis 1 | chr1:28152564-28155948 REVERSE LENGTH=541;; (*ITAG) Solyc12g009260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2537941-2544921 transcript_region:SL2.40ch12:2537941..2544921+ go_terms:GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase II (AHRD V1 **** Q9Z6Z0_CHLPN); contains Interpro domain(s) IPR000794 Beta-ketoacyl synthase "; GO:0004315 NbS00038439g0004.1 protein AED:0.31 eAED:0.31 QI:512|1|0.5|1|1|1|2|0|377; (*TAIR) AT5G58730.1 (e_value=4e-134) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:23723627-23725324 REVERSE LENGTH=353;; (*ITAG) Solyc06g076950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44215180-44219042 transcript_region:SL2.40ch06:44215180..44219042+ go_terms:GO:0016301 functional_description:"Carbohydrate kinase PfkB (AHRD V1 **** B6TDQ7_MAIZE); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00055565g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.71|1|0.83|0.71|7|281|504; (*SWP) sp|B7GIR2|OBG_ANOFW (e_value=1e-44) GTPase obg OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=obg PE=3 SV=1;; (*TAIR) AT1G07615.1 (e_value=3e-143) | Symbols: | GTP-binding protein Obg/CgtA | chr1:2342277-2344200 REVERSE LENGTH=493;; (*ITAG) Solyc04g058140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54386648-54390144 transcript_region:SL2.40ch04:54386648..54390144+ go_terms:GO:0005515,GO:0003924 functional_description:"GTPase obg (AHRD V1 *-** Q09CR7_STIAU); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0005515,GO:0003924 NbS00055565g0005.1 protein AED:0.20 eAED:0.20 QI:298|0.5|0.33|1|1|1|3|202|73; (*SWP) sp|Q40410|MT2_NICPL (e_value=5e-26) Metallothionein-like protein type 2 OS=Nicotiana plumbaginifolia PE=3 SV=1;; (*ITAG) Solyc06g076140.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:43665663-43666838 transcript_region:SL2.40ch06:43665663..43666838+ go_terms:GO:0005507 functional_description:"Metallothionein-like protein (AHRD V1 ***- A9YTZ3_SOLTU); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0005507 NbS00055565g0008.1 protein AED:0.16 eAED:0.61 QI:0|0|0|1|0|0|2|0|66 NbS00019991g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|60 NbS00019991g0002.1 protein AED:0.32 eAED:0.47 QI:0|0|0|1|0|0|2|0|91; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=1e-25) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT1G66480.1 (e_value=9e-27) | Symbols: | plastid movement impaired 2 | chr1:24805770-24807405 REVERSE LENGTH=225;; (*ITAG) Solyc05g008210.2.1 (e_value=3e-38) genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)"; NbS00060778g0003.1 protein AED:0.20 eAED:0.21 QI:174|1|0.66|1|1|1|3|0|415; (*SWP) sp|Q9FIW5|NAC94_ARATH (e_value=6e-59) Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=2 SV=1;; (*TAIR) AT2G02450.1 (e_value=2e-107) | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC domain containing protein 35 | chr2:648044-650649 FORWARD LENGTH=379;; (*ITAG) Solyc01g102740.2.1 (e_value=4e-135) genomic_reference:SL2.40ch01 gene_region:83236708-83238761 transcript_region:SL2.40ch01:83236708..83238761+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9GVP9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00014373g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|666|155; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=3e-81) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=3e-82) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=4e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00013198g0004.1 protein AED:0.28 eAED:0.29 QI:0|0.37|0.33|0.88|0.87|1|9|0|369; (*SWP) sp|Q8GXE6|AKT6_ARATH (e_value=1e-13) Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2;; (*TAIR) AT4G18950.1 (e_value=2e-49) | Symbols: | Integrin-linked protein kinase family | chr4:10375685-10378129 FORWARD LENGTH=459;; (*ITAG) Solyc02g091160.2.1 (e_value=2e-93) genomic_reference:SL2.40ch02 gene_region:47136636-47138672 transcript_region:SL2.40ch02:47136636..47138672+ go_terms:GO:0030506 functional_description:"Ankyrin repeat domain-containing protein 50 (AHRD V1 **-* ANR50_HUMAN); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00013198g0005.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|111; (*ITAG) Solyc09g059680.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00013198g0007.1 protein AED:0.26 eAED:0.50 QI:85|0|0|1|0|0|2|0|64; (*ITAG) Solyc04g050030.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00024946g0001.1 protein AED:0.31 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|123; (*SWP) sp|Q1KXS1|RK16_HELAN (e_value=1e-51) 50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1;; (*ITAG) ATCG00790.1 (e_value=5e-49) | Symbols: RPL16 | ribosomal protein L16 | chrC:81189-82652 REVERSE LENGTH=135;; (*ITAG) Solyc01g007600.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:1878019-1878953 transcript_region:SL2.40ch01:1878019..1878953- go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L16 chloroplastic (AHRD V1 ***- D3WCG3_NEROL); contains Interpro domain(s) IPR000114 Ribosomal protein L16 "; GO:0005840,GO:0006412 NbS00024946g0208.1 protein AED:0.22 eAED:0.43 QI:0|0.42|0.25|0.62|0.71|0.75|8|0|210 NbS00030714g0003.1 protein AED:0.05 eAED:0.05 QI:182|1|1|1|0|0|2|228|146; (*SWP) sp|Q9LUL6|ATL61_ARATH (e_value=1e-14) Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana GN=ATL61 PE=3 SV=1;; (*TAIR) AT3G14320.1 (e_value=8e-16) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr3:4777731-4778345 REVERSE LENGTH=204;; (*ITAG) Solyc01g088440.2.1 (e_value=3e-59) genomic_reference:SL2.40ch01 gene_region:75005293-75005942 transcript_region:SL2.40ch01:75005293..75005942- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00041601g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|164; (*SWP) sp|Q9ZT50|RHA2A_ARATH (e_value=1e-16) E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1;; (*TAIR) AT3G61460.1 (e_value=4e-19) | Symbols: BRH1 | brassinosteroid-responsive RING-H2 | chr3:22741701-22742213 REVERSE LENGTH=170;; (*ITAG) Solyc04g054370.1.1 (e_value=3e-105) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:51515152-51515649 transcript_region:SL2.40ch04:51515152..51515649- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- B5X4J4_SALSA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00042052g0005.1 protein AED:0.39 eAED:0.39 QI:152|1|0.8|1|0|0.2|5|0|134; (*TAIR) AT1G12790.1 (e_value=9e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4359597-4361222 REVERSE LENGTH=250;; (*ITAG) Solyc06g064560.2.1 (e_value=3e-56) genomic_reference:SL2.40ch06 gene_region:36619949-36622784 transcript_region:SL2.40ch06:36619949..36622784- functional_description:"DNA ligase-like protein (AHRD V1 ***- Q8L9H8_ARATH); contains Interpro domain(s) IPR010994 RuvA domain 2-like "; NbS00011189g0008.1 protein AED:0.07 eAED:0.07 QI:71|1|1|1|0.71|0.75|8|193|523; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=5e-119) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT5G53390.1 (e_value=1e-162) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:21656951-21659207 REVERSE LENGTH=486;; (*ITAG) Solyc10g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3495360-3501746 transcript_region:SL2.40ch10:3495360..3501746+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- Q124V7_POLSJ); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00011189g0101.1 protein AED:0.09 eAED:0.09 QI:32|0.66|0.5|1|0.66|0.5|4|0|329 NbS00011189g0106.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|398 NbS00030809g0001.1 protein AED:0.32 eAED:0.94 QI:0|0|0|0.5|1|1|4|0|91 NbS00059147g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|174; (*SWP) sp|Q9LUB6|SNE_ARATH (e_value=3e-41) F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1;; (*TAIR) AT5G48170.1 (e_value=2e-42) | Symbols: SLY2 | F-box family protein | chr5:19532729-19533202 REVERSE LENGTH=157;; (*ITAG) Solyc05g040040.1.1 (e_value=5e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:48096955-48097413 transcript_region:SL2.40ch05:48096955..48097413+ functional_description:"F-box protein GID2 (AHRD V1 ***- B6SU06_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00050872g0004.1 protein AED:0.35 eAED:0.35 QI:74|0.90|0.83|1|0.81|0.91|12|0|418; (*SWP) sp|Q42593|APXT_ARATH (e_value=0.0) L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2;; (*TAIR) AT1G77490.1 (e_value=0.0) | Symbols: TAPX | thylakoidal ascorbate peroxidase | chr1:29117688-29120046 FORWARD LENGTH=426;; (*ITAG) Solyc11g018550.2.1 (e_value=0.0) genomic_reference:SL2.40ch11 gene_region:8668547-8674999 transcript_region:SL2.40ch11:8668547..8674999+ go_terms:GO:0016688,GO:0004130,GO:0005247 functional_description:"Thylakoid-bound ascorbate peroxidase 6"; GO:0016688,GO:0004130,GO:0005247 NbS00002807g0006.1 protein AED:0.22 eAED:0.23 QI:0|0.88|0.7|0.9|0.66|0.7|10|0|345; (*TAIR) AT2G31040.1 (e_value=4e-144) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc12g010870.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3785577-3790200 transcript_region:SL2.40ch12:3785577..3790200+ functional_description:"ATP synthase I-like protein (AHRD V1 ***- A8HNA8_CHLRE)"; NbS00002807g0002.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|319; (*TAIR) AT3G58630.1 (e_value=1e-69) | Symbols: | sequence-specific DNA binding transcription factors | chr3:21683928-21685771 REVERSE LENGTH=321;; (*ITAG) Solyc12g010890.1.1 (e_value=3e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3792736-3796034 transcript_region:SL2.40ch12:3792736..3796034- functional_description:"Transcription factor (AHRD V1 **-- D7LW59_ARALY)"; NbS00009291g0004.1 protein AED:0.11 eAED:0.12 QI:416|0.5|0.4|1|0.5|0.6|5|0|412; (*SWP) sp|Q7XUC5|P2C43_ORYSJ (e_value=5e-165) Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584300 PE=2 SV=2;; (*TAIR) AT5G06750.3 (e_value=2e-158) | Symbols: | Protein phosphatase 2C family protein | chr5:2086403-2088245 REVERSE LENGTH=393;; (*ITAG) Solyc10g078820.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59833900-59836380 transcript_region:SL2.40ch10:59833900..59836380- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2c-like protein (AHRD V1 ***- Q8S2S5_THEHA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00037174g0004.1 protein AED:0.21 eAED:0.22 QI:0|0.5|0.42|0.71|0.83|0.85|7|0|590; (*TAIR) AT5G62570.2 (e_value=2e-138) | Symbols: | Calmodulin binding protein-like | chr5:25114934-25116967 FORWARD LENGTH=494;; (*ITAG) Solyc03g113920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00028903g0006.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0|0|2|0|157; (*SWP) sp|Q8H1D2|WOX5_ARATH (e_value=5e-49) WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana GN=WOX5 PE=2 SV=1;; (*TAIR) AT3G11260.1 (e_value=4e-50) | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:3527606-3528263 FORWARD LENGTH=182;; (*ITAG) Solyc03g096300.2.1 (e_value=3e-62) genomic_reference:SL2.40ch03 gene_region:51765697-51766273 transcript_region:SL2.40ch03:51765697..51766273- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 5 (AHRD V1 ***- B6TXK2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00004227g0111.1 protein AED:0.01 eAED:0.01 QI:94|1|1|1|1|1|3|139|114 NbS00004227g0113.1 protein AED:0.03 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|226 NbS00004227g0112.1 protein AED:0.53 eAED:0.53 QI:0|0|0.25|0.25|1|1|4|250|109 NbS00031166g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|478; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=4e-50) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=3e-51) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc02g069800.1.1 (e_value=1e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34203354-34204361 transcript_region:SL2.40ch02:34203354..34204361- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU6_ACTCH); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00031166g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|0.5|0|0.5|2|1703|171 NbS00014687g0005.1 protein AED:0.26 eAED:0.27 QI:0|0|0|1|0.33|0.5|4|0|362; (*SWP) sp|Q64LD2|WDR25_HUMAN (e_value=8e-36) WD repeat-containing protein 25 OS=Homo sapiens GN=WDR25 PE=1 SV=3;; (*TAIR) AT5G54520.1 (e_value=3e-111) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22146781-22149089 REVERSE LENGTH=457;; (*ITAG) Solyc04g009360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2793909-2799625 transcript_region:SL2.40ch04:2793909..2799625- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MUA3_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00014687g0004.1 protein AED:0.33 eAED:0.33 QI:244|1|1|1|0.6|0.5|6|278|222; (*TAIR) AT3G19900.1 (e_value=3e-79) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3067 (InterPro:IPR021420); Has 276 Blast hits to 276 proteins in 83 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). | chr3:6922852-6924557 REVERSE LENGTH=222;; (*ITAG) Solyc04g009370.2.1 (e_value=2e-143) genomic_reference:SL2.40ch04 gene_region:2800746-2806524 transcript_region:SL2.40ch04:2800746..2806524- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q013I8_OSTTA)"; NbS00034812g0010.1 protein AED:0.16 eAED:0.16 QI:228|0.87|0.77|1|0.87|0.88|9|277|345; (*SWP) sp|P71019|FABD_BACSU (e_value=5e-47) Malonyl CoA-acyl carrier protein transacylase OS=Bacillus subtilis (strain 168) GN=fabD PE=3 SV=2;; (*TAIR) AT2G30200.1 (e_value=1e-164) | Symbols: | catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding | chr2:12883162-12885482 REVERSE LENGTH=393;; (*ITAG) Solyc01g006980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1552093-1555934 transcript_region:SL2.40ch01:1552093..1555934+ go_terms:GO:0008152,GO:0006633 functional_description:"Malonyl CoA-acyl carrier protein transacylase containing protein expressed (AHRD V1 ***- Q10MS3_ORYSJ); contains Interpro domain(s) IPR004410 Malonyl CoA-acyl carrier protein transacylase "; GO:0008152,GO:0006633 NbS00034812g0009.1 protein AED:0.23 eAED:0.25 QI:203|0.8|0.68|1|0.66|0.68|16|0|726; (*SWP) sp|C0LGE0|Y1765_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1;; (*TAIR) AT1G07650.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359817-2366423 REVERSE LENGTH=1014;; (*ITAG) Solyc07g055810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61058927-61068788 transcript_region:SL2.40ch07:61058927..61068788+ go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00002982g0008.1 protein AED:0.16 eAED:0.16 QI:196|0.93|0.93|1|0.8|0.81|16|479|400; (*SWP) sp|P50218|IDHC_TOBAC (e_value=0.0) Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G65930.1 (e_value=0.0) | Symbols: cICDH | cytosolic NADP+-dependent isocitrate dehydrogenase | chr1:24539088-24541861 FORWARD LENGTH=410;; (*ITAG) Solyc01g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:394402-399248 transcript_region:SL2.40ch01:394402..399248+ go_terms:GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- D2D324_GOSHI); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0055114 NbS00002982g0002.1 protein AED:0.19 eAED:0.19 QI:279|0.85|0.75|1|0.85|0.75|8|0|386; (*TAIR) AT1G55360.1 (e_value=0.0) | Symbols: | Protein of Unknown Function (DUF239) | chr1:20666526-20668502 REVERSE LENGTH=422;; (*ITAG) Solyc01g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:382300-385329 transcript_region:SL2.40ch01:382300..385329+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbC25907003g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|356; (*SWP) sp|P52711|CBP23_HORVU (e_value=2e-95) Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1;; (*TAIR) AT2G35770.1 (e_value=1e-90) | Symbols: scpl28 | serine carboxypeptidase-like 28 | chr2:15034179-15036497 REVERSE LENGTH=462;; (*ITAG) Solyc01g108470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87551524-87554480 transcript_region:SL2.40ch01:87551524..87554480- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00011579g0006.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|131 NbS00011579g0021.1 protein AED:0.18 eAED:0.18 QI:92|0.90|0.91|1|0.72|0.75|12|333|282; (*SWP) sp|Q10442|YDE9_SCHPO (e_value=2e-41) Uncharacterized mitochondrial carrier C12B10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12B10.09 PE=2 SV=1;; (*TAIR) AT4G39460.2 (e_value=7e-145) | Symbols: SAMC1 | S-adenosylmethionine carrier 1 | chr4:18356093-18358596 REVERSE LENGTH=325;; (*ITAG) Solyc04g051580.2.1 (e_value=5e-174) genomic_reference:SL2.40ch04 gene_region:50020620-50028376 transcript_region:SL2.40ch04:50020620..50028376- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00011579g0023.1 protein AED:0.15 eAED:0.15 QI:93|0.92|0.88|1|0.65|0.66|27|0|3176; (*SWP) sp|Q55GD2|Y8328_DICDI (e_value=3e-22) Protein DDB_G0268328 OS=Dictyostelium discoideum GN=DDB_G0268328 PE=4 SV=1;; (*TAIR) AT4G39420.2 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18339731-18354701 FORWARD LENGTH=3184;; (*ITAG) Solyc04g051570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50007678-50019459 transcript_region:SL2.40ch04:50007678..50019459+ functional_description:"AT4G39450-like protein (Fragment) (AHRD V1 *--- D6PRI6_9BRAS)"; NbS00011579g0022.1 protein AED:0.08 eAED:0.15 QI:0|0.25|0|1|0.25|0.2|5|0|462; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=3e-128) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT2G19440.1 (e_value=5e-130) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:8418164-8419806 REVERSE LENGTH=478;; (*ITAG) Solyc04g051590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50029511-50032123 transcript_region:SL2.40ch04:50029511..50032123+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00006329g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.75|0.75|0|0.5|4|669|89 NbS00006329g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|445; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=6e-28) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=5e-29) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc03g117270.1.1 (e_value=2e-156) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:60500607-60501878 transcript_region:SL2.40ch03:60500607..60501878+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006329g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|555; (*SWP) sp|P0C897|Y3264_ARATH (e_value=3e-157) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=3e-158) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc03g117260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60495433-60497189 transcript_region:SL2.40ch03:60495433..60497189+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 **-- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00006329g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|436; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=3e-38) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=3e-39) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc03g117270.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:60500607-60501878 transcript_region:SL2.40ch03:60500607..60501878+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016349g0007.1 protein AED:0.22 eAED:0.24 QI:0|0.5|0.4|1|0.25|0.4|5|0|487; (*TAIR) AT3G20300.1 (e_value=1e-165) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc11g012000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4951033-4953728 transcript_region:SL2.40ch11:4951033..4953728+ functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00016349g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|176; (*ITAG) Solyc06g059790.2.1 (e_value=8e-15) genomic_reference:SL2.40ch06 gene_region:34079809-34080659 transcript_region:SL2.40ch06:34079809..34080659+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** A9NJW5_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00036767g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|366|116; (*TAIR) AT1G48200.1 (e_value=3e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17797070-17797852 REVERSE LENGTH=118;; (*ITAG) Solyc11g012890.1.1 (e_value=4e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5667348-5673104 transcript_region:SL2.40ch11:5667348..5673104- functional_description:"Unknown Protein (AHRD V1)"; NbS00006698g0008.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.6|0.8|1|1|5|0|397; (*SWP) sp|P48979|PGLR_PRUPE (e_value=0.0) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=2e-162) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g096730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63866593-63868349 transcript_region:SL2.40ch12:63866593..63868349+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- O22610_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00006698g0004.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|109 NbS00006698g0002.1 protein AED:0.41 eAED:0.41 QI:63|0|0.5|1|0|0.5|2|0|269; (*SWP) sp|Q9ASS4|Y5838_ARATH (e_value=3e-53) Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1;; (*TAIR) AT5G48380.1 (e_value=2e-54) | Symbols: BIR1 | BAK1-interacting receptor-like kinase 1 | chr5:19604584-19606532 REVERSE LENGTH=620;; (*ITAG) Solyc12g096710.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63859697-63863710 transcript_region:SL2.40ch12:63859697..63863710+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006698g0011.1 protein AED:0.45 eAED:0.50 QI:0|0|0|0.6|1|1|5|0|141; (*ITAG) Solyc12g096800.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63910259-63911638 transcript_region:SL2.40ch12:63910259..63911638- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-- Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00006698g0025.1 protein AED:0.42 eAED:0.84 QI:0|0|0|1|0|0|3|0|130 NbS00006698g0024.1 protein AED:0.44 eAED:0.83 QI:0|0|0|1|0|0|2|0|92 NbS00003747g0010.1 protein AED:0.17 eAED:0.19 QI:0|0|0|0.8|0.25|0.2|5|0|872; (*TAIR) AT5G01030.2 (e_value=2e-21) | Symbols: | Protein of unknown function (DUF3527) | chr5:10638-13003 FORWARD LENGTH=744;; (*ITAG) Solyc09g011720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003747g0005.1 protein AED:0.35 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|83; (*TAIR) AT3G09250.1 (e_value=2e-23) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr3:2839080-2840294 FORWARD LENGTH=244;; (*ITAG) Solyc09g011730.2.1 (e_value=1e-35) genomic_reference:SL2.40ch09 gene_region:5012208-5015671 transcript_region:SL2.40ch09:5012208..5015671- functional_description:"3-dehydroquinate dehydratase (AHRD V1 *--- B5HIA9_STRPR)"; NbS00060746g0005.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|4|0|333; (*SWP) sp|Q9LYN0|PR1B1_ARATH (e_value=7e-63) PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1;; (*TAIR) AT3G56110.2 (e_value=5e-64) | Symbols: PRA1.B1 | prenylated RAB acceptor 1.B1 | chr3:20822228-20822857 REVERSE LENGTH=209;; (*ITAG) Solyc06g050570.1.1 (e_value=9e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:29767594-29768250 transcript_region:SL2.40ch06:29767594..29768250- functional_description:"Prenylated rab acceptor family protein (AHRD V1 ***- D7LVC4_ARALY); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00009541g0006.1 protein AED:0.20 eAED:0.20 QI:270|0.96|0.96|1|0.92|0.92|26|170|898; (*SWP) sp|O23461|ARAK_ARATH (e_value=0.0) L-arabinokinase OS=Arabidopsis thaliana GN=ARA1 PE=1 SV=1;; (*TAIR) AT4G16130.1 (e_value=0.0) | Symbols: ARA1, ISA1, ATISA1 | arabinose kinase | chr4:9120875-9127656 FORWARD LENGTH=1039;; (*ITAG) Solyc00g011890.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:10333916-10350566 transcript_region:SL2.40ch00:10333916..10350566- go_terms:GO:0004335,GO:0009702 functional_description:"Galactokinase like protein (AHRD V1 **** O23461_ARATH); contains Interpro domain(s) IPR012369 Galactokinase, glycosyltransferase "; GO:0004335,GO:0009702 NbS00015439g0005.1 protein AED:0.03 eAED:0.09 QI:79|1|0.75|1|0.71|0.62|8|0|435; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-90) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G04160.1 (e_value=0.0) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc07g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00015439g0004.1 protein AED:0.38 eAED:0.48 QI:557|0.5|0.66|1|0|0.66|3|0|82; (*ITAG) Solyc06g060380.2.1 (e_value=8e-15) genomic_reference:SL2.40ch06 gene_region:34764560-34793492 transcript_region:SL2.40ch06:34764560..34793492+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 ***- PDS5A_RAT); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00021532g0012.1 protein AED:0.23 eAED:0.23 QI:207|1|0.92|1|0.91|0.84|13|644|404; (*SWP) sp|Q9NQ29|LUC7L_HUMAN (e_value=7e-23) Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1;; (*TAIR) AT5G17440.1 (e_value=2e-178) | Symbols: | LUC7 related protein | chr5:5749849-5753415 FORWARD LENGTH=404;; (*ITAG) Solyc05g056280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64772180-64781152 transcript_region:SL2.40ch05:64772180..64781152+ go_terms:GO:0003729 functional_description:"RNA-binding protein Luc7-like 2 (AHRD V1 **** B6TXA2_MAIZE); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0003729 NbS00021532g0013.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|1|0.5|1|3|0|257; (*SWP) sp|Q42533|BCCP1_ARATH (e_value=2e-13) Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=BCCP1 PE=1 SV=2;; (*TAIR) AT5G16390.2 (e_value=8e-15) | Symbols: CAC1, CAC1A, BCCP, BCCP1, CAC1-A, BCCP-1 | chloroplastic acetylcoenzyme A carboxylase 1 | chr5:5361554-5363020 REVERSE LENGTH=254;; (*ITAG) Solyc05g056290.2.1 (e_value=2e-53) genomic_reference:SL2.40ch05 gene_region:64781643-64787587 transcript_region:SL2.40ch05:64781643..64787587+ go_terms:GO:0003989 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-** B9Z6D8_9NEIS); contains Interpro domain(s) IPR000089 Biotin/lipoyl attachment IPR001882 Biotin-binding site "; GO:0003989 NbS00021532g0017.1 protein AED:0.46 eAED:0.48 QI:0|0.5|0.33|1|1|1|3|0|80; (*SWP) sp|Q9XFH8|TRXF1_ARATH (e_value=3e-40) Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2;; (*TAIR) AT3G02730.1 (e_value=2e-41) | Symbols: TRXF1, ATF1 | thioredoxin F-type 1 | chr3:588570-589591 REVERSE LENGTH=178;; (*ITAG) Solyc05g056300.2.1 (e_value=3e-48) genomic_reference:SL2.40ch05 gene_region:64787697-64790265 transcript_region:SL2.40ch05:64787697..64790265- go_terms:GO:0008047 functional_description:"Thioredoxin-like protein (AHRD V1 *-*- D8UJJ9_VOLCA); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0008047 NbS00021532g0018.1 protein AED:0.42 eAED:0.63 QI:0|0|0|1|0.5|0.66|3|0|141; (*ITAG) Solyc05g056300.2.1 (e_value=2e-30) genomic_reference:SL2.40ch05 gene_region:64787697-64790265 transcript_region:SL2.40ch05:64787697..64790265- go_terms:GO:0008047 functional_description:"Thioredoxin-like protein (AHRD V1 *-*- D8UJJ9_VOLCA); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0008047 NbS00023763g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|160; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=9e-39) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.2 (e_value=6e-40) | Symbols: DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=809;; (*ITAG) Solyc08g006600.2.1 (e_value=3e-61) genomic_reference:SL2.40ch08 gene_region:1188325-1206669 transcript_region:SL2.40ch08:1188325..1206669- go_terms:GO:0003924 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00023763g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|0.75|1|1|4|0|153; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=1e-69) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=8e-71) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc08g006600.2.1 (e_value=8e-85) genomic_reference:SL2.40ch08 gene_region:1188325-1206669 transcript_region:SL2.40ch08:1188325..1206669- go_terms:GO:0003924 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00034363g0006.1 protein AED:0.14 eAED:0.14 QI:128|1|0.75|1|0.33|0.5|4|0|845; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=2e-95) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT5G17790.1 (e_value=2e-96) | Symbols: VAR3 | zinc finger (Ran-binding) family protein | chr5:5869810-5872671 REVERSE LENGTH=758;; (*ITAG) Solyc01g057780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56763262-56769231 transcript_region:SL2.40ch01:56763262..56769231- go_terms:GO:0005515 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 **-- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005515 NbS00034363g0003.1 protein AED:0.32 eAED:0.35 QI:0|1|0.88|1|1|1|9|224|277; (*SWP) sp|A1DHW1|NCB5R_NEOFI (e_value=5e-92) NADH-cytochrome b5 reductase 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=cbr1 PE=3 SV=2;; (*TAIR) AT5G17770.1 (e_value=2e-168) | Symbols: ATCBR, CBR1, CBR | NADH:cytochrome B5 reductase 1 | chr5:5864543-5866495 REVERSE LENGTH=281;; (*ITAG) Solyc10g081440.1.1 (e_value=2e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61822969-61825835 transcript_region:SL2.40ch10:61822969..61825835- go_terms:GO:0055114 functional_description:"NADH cytochrome b5 reductase (AHRD V1 ***- Q5PY86_VERFO); contains Interpro domain(s) IPR008333 Oxidoreductase FAD-binding region "; GO:0055114 NbS00034363g0005.1 protein AED:0.41 eAED:0.45 QI:0|0.4|0.33|0.83|1|1|6|228|150; (*SWP) sp|Q9ASS7|CAAT2_ARATH (e_value=1e-18) Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1;; (*TAIR) AT1G58030.1 (e_value=9e-20) | Symbols: CAT2 | cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635;; (*ITAG) Solyc10g081460.1.1 (e_value=7e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61835895-61843695 transcript_region:SL2.40ch10:61835895..61843695- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C3GEP6_BACTU); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00034363g0001.1 protein AED:0.21 eAED:0.22 QI:334|1|0.6|1|1|1|5|0|438; (*SWP) sp|Q8H3C9|ILL7_ORYSJ (e_value=5e-177) IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=1e-171) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc06g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33677809-33682268 transcript_region:SL2.40ch06:33677809..33682268- go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 **** B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00015113g0102.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|605 NbS00000162g0001.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|91; (*TAIR) AT3G52770.1 (e_value=3e-13) | Symbols: ZPR3 | protein binding | chr3:19557891-19558094 REVERSE LENGTH=67;; (*ITAG) Solyc11g007100.1.1 (e_value=3e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1565412-1565645 transcript_region:SL2.40ch11:1565412..1565645- functional_description:"Unknown Protein (AHRD V1)"; NbS00000162g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.87|0.55|0.88|0.62|0.77|9|0|475; (*SWP) sp|B9RAJ0|DNPEP_RICCO (e_value=0.0) Probable aspartyl aminopeptidase OS=Ricinus communis GN=RCOM_1506700 PE=2 SV=2;; (*TAIR) AT5G04710.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:1357273-1360128 REVERSE LENGTH=526;; (*ITAG) Solyc11g007090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1557511-1565120 transcript_region:SL2.40ch11:1557511..1565120+ go_terms:GO:0005773 functional_description:"Aspartyl aminopeptidase (AHRD V1 ***- Q9LZ26_ARATH); contains Interpro domain(s) IPR001948 Peptidase M18, aminopeptidase I "; GO:0005773 NbS00000162g0009.1 protein AED:0.20 eAED:0.78 QI:0|0|0|1|0|0|2|0|85 NbS00059228g0003.1 protein AED:0.20 eAED:0.26 QI:0|0.5|0.4|1|0.75|0.8|5|0|355; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=4e-148) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=2e-160) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc10g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:220068-222525 transcript_region:SL2.40ch10:220068..222525+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00015037g0006.1 protein AED:0.30 eAED:0.30 QI:90|0.5|0.4|1|1|1|5|518|819; (*SWP) sp|Q9LRA7|TPS9_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=1 SV=1;; (*TAIR) AT1G23870.1 (e_value=0.0) | Symbols: ATTPS9, TPS9 | trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867;; (*ITAG) Solyc05g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:574848-578018 transcript_region:SL2.40ch05:574848..578018+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00015037g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|117; (*SWP) sp|Q9M2E8|HDG1_ARATH (e_value=5e-23) Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1;; (*TAIR) AT3G61150.1 (e_value=3e-24) | Symbols: HDG1, HD-GL2-1 | homeodomain GLABROUS 1 | chr3:22630769-22634875 FORWARD LENGTH=808;; (*ITAG) Solyc11g022420.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13860001-13866988 transcript_region:SL2.40ch11:13860001..13866988+ go_terms:GO:0003700,GO:0043565 functional_description:"Homeodomain-containing transcription factor FWA (AHRD V1 **-* B5BQ02_ARASU); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700,GO:0043565 NbS00019052g0001.1 protein AED:0.01 eAED:0.01 QI:41|1|1|1|0.75|0.6|5|328|286; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=4e-55) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=3e-56) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc01g096300.2.1 (e_value=5e-149) genomic_reference:SL2.40ch01 gene_region:79143339-79147617 transcript_region:SL2.40ch01:79143339..79147617- functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00019052g0004.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.66|1|1|3|0|72; (*ITAG) Solyc09g059680.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00019052g0009.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|112; (*ITAG) Solyc08g048200.1.1 (e_value=5e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:38280858-38282373 transcript_region:SL2.40ch08:38280858..38282373+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00019052g0002.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|1|1|2|0|204; (*ITAG) Solyc01g049970.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:42750080-42753902 transcript_region:SL2.40ch01:42750080..42753902- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00041567g0012.1 protein AED:0.09 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.5|4|0|540; (*SWP) sp|Q9SQU6|PP216_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1;; (*TAIR) AT3G06430.1 (e_value=0.0) | Symbols: EMB2750 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1956658-1958240 REVERSE LENGTH=486;; (*ITAG) Solyc12g098990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64654400-64657233 transcript_region:SL2.40ch12:64654400..64657233+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041567g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|531; (*SWP) sp|P43281|METK2_SOLLC (e_value=0.0) S-adenosylmethionine synthase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1;; (*TAIR) AT1G02500.2 (e_value=0.0) | Symbols: SAM1, SAM-1, MAT1, AtSAM1 | S-adenosylmethionine synthetase 1 | chr1:519037-520218 FORWARD LENGTH=393;; (*ITAG) Solyc12g099000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64658262-64659443 transcript_region:SL2.40ch12:64658262..64659443- go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00041567g0009.1 protein AED:0.36 eAED:0.74 QI:0|0|0|0.66|0.4|0.5|6|0|531; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=3e-41) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G14470.1 (e_value=3e-41) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc02g084450.2.1 (e_value=1e-58) genomic_reference:SL2.40ch02 gene_region:42119897-42122641 transcript_region:SL2.40ch02:42119897..42122641+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00009619g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|449; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-106) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G65550.1 (e_value=4e-53) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26198410-26199810 REVERSE LENGTH=466;; (*ITAG) Solyc11g007480.1.1 (e_value=5e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1758242-1759603 transcript_region:SL2.40ch11:1758242..1759603- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *--- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00009619g0006.1 protein AED:0.16 eAED:0.16 QI:388|1|1|1|1|1|2|256|244; (*SWP) sp|O22230|HSFB3_ARATH (e_value=8e-59) Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1;; (*TAIR) AT2G41690.1 (e_value=6e-60) | Symbols: AT-HSFB3, HSFB3 | heat shock transcription factor B3 | chr2:17381723-17382577 FORWARD LENGTH=244;; (*ITAG) Solyc10g079380.1.1 (e_value=3e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60254409-60255720 transcript_region:SL2.40ch10:60254409..60255720+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 ***- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00009619g0111.1 protein AED:0.33 eAED:0.33 QI:0|0.77|0.8|1|0.77|0.8|10|238|289 NbS00009619g0201.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|701 NbS00009619g0207.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.66|0|0|3|0|101 NbS00010062g0016.1 protein AED:0.11 eAED:0.11 QI:45|0.83|0.71|1|0.66|0.85|7|355|435; (*TAIR) AT1G48580.1 (e_value=1e-44) | Symbols: | unknown protein; Has 91 Blast hits to 91 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:17958403-17960610 REVERSE LENGTH=454;; (*ITAG) Solyc03g118700.2.1 (e_value=8e-159) genomic_reference:SL2.40ch03 gene_region:61604850-61608020 transcript_region:SL2.40ch03:61604850..61608020- functional_description:"cDNA FLJ75470 (AHRD V1 *-*- A8K7A9_HUMAN)"; NbS00010062g0002.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|1|1|2|0|297; (*ITAG) Solyc06g072430.1.1 (e_value=3e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41073324-41074445 transcript_region:SL2.40ch06:41073324..41074445+ go_terms:GO:0006915 functional_description:"Bcl-2-associated athanogene-like protein (AHRD V1 *-*- D1MIX4_VITVI); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00010062g0013.1 protein AED:0.32 eAED:0.32 QI:171|1|1|1|0.66|0.85|7|293|406; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=4e-37) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT1G48570.1 (e_value=4e-118) | Symbols: | zinc finger (Ran-binding) family protein | chr1:17955455-17957661 REVERSE LENGTH=455;; (*ITAG) Solyc03g118680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61591314-61595702 transcript_region:SL2.40ch03:61591314..61595702- go_terms:GO:0005488 functional_description:"Zinc finger protein (AHRD V1 *--- B6SYQ8_MAIZE); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00010062g0019.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.5|1|0.8|0.83|6|0|596; (*SWP) sp|Q9UBV2|SE1L1_HUMAN (e_value=5e-77) Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3;; (*TAIR) AT1G18260.1 (e_value=0.0) | Symbols: | HCP-like superfamily protein | chr1:6279047-6282008 REVERSE LENGTH=678;; (*ITAG) Solyc03g118670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61583911-61590920 transcript_region:SL2.40ch03:61583911..61590920+ go_terms:GO:0005515 functional_description:"Protein sel-1 homolog 2 (AHRD V1 **-- SE1L2_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00010062g0014.1 protein AED:0.24 eAED:0.24 QI:0|0.90|1|1|1|1|12|467|544; (*SWP) sp|Q9LVH5|OE64C_ARATH (e_value=0.0) Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1;; (*TAIR) AT3G17970.1 (e_value=0.0) | Symbols: atToc64-III, TOC64-III | translocon at the outer membrane of chloroplasts 64-III | chr3:6148030-6151794 FORWARD LENGTH=589;; (*ITAG) Solyc03g118690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61596849-61604695 transcript_region:SL2.40ch03:61596849..61604695+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00041509g0008.1 protein AED:0.39 eAED:0.41 QI:69|0.8|0.75|1|0.66|0.81|16|0|570; (*SWP) sp|Q9LZS3|GLGB2_ARATH (e_value=0.0) 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1;; (*TAIR) AT5G03650.1 (e_value=0.0) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805;; (*ITAG) Solyc09g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2539818-2558047 transcript_region:SL2.40ch09:2539818..2558047+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme II (AHRD V1 **** P93691_WHEAT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00007251g0005.1 protein AED:0.05 eAED:0.11 QI:27|1|0.5|1|1|1|2|0|105; (*TAIR) AT2G47980.1 (e_value=3e-44) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=8e-59) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00007251g0006.1 protein AED:0.58 eAED:0.58 QI:0|0|0|1|0|0|2|0|122; (*TAIR) AT2G47980.1 (e_value=1e-13) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=5e-43) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00019925g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|73; (*SWP) sp|Q9SSK9|MLP28_ARATH (e_value=2e-17) MLP-like protein 28 OS=Arabidopsis thaliana GN=MLP28 PE=1 SV=1;; (*TAIR) AT1G70830.5 (e_value=1e-19) | Symbols: MLP28 | MLP-like protein 28 | chr1:26710203-26711395 REVERSE LENGTH=173;; (*ITAG) Solyc09g005500.2.1 (e_value=1e-33) genomic_reference:SL2.40ch09 gene_region:339412-340474 transcript_region:SL2.40ch09:339412..340474+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00029084g0007.1 protein AED:0.09 eAED:0.15 QI:0|0.6|0.16|1|0.4|0.5|6|0|360; (*SWP) sp|Q9C9J0|LHTL5_ARATH (e_value=6e-118) Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2;; (*TAIR) AT1G71680.1 (e_value=4e-119) | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944671-26946731 FORWARD LENGTH=448;; (*ITAG) Solyc02g093860.2.1 (e_value=4e-108) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00029084g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|0|0.33|3|0|235; (*SWP) sp|A4QL19|PSAA_DRANE (e_value=2e-104) Photosystem I P700 chlorophyll a apoprotein A1 OS=Draba nemorosa GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=3e-105) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc10g017900.1.1 (e_value=9e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6078979-6079658 transcript_region:SL2.40ch10:6078979..6079658+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein (AHRD V1 ***- B9RL08_RICCO); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00029084g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|82; (*SWP) sp|Q332X8|PSAA_LACSA (e_value=2e-44) Photosystem I P700 chlorophyll a apoprotein A1 OS=Lactuca sativa GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=7e-44) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc12g033040.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22375310-22375922 transcript_region:SL2.40ch12:22375310..22375922+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D2KLK3_OLEEU); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00033379g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.9|0.81|1|0.8|0.81|11|467|647; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=8e-124) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT1G26190.1 (e_value=0.0) | Symbols: | Phosphoribulokinase / Uridine kinase family | chr1:9057285-9060433 REVERSE LENGTH=674;; (*ITAG) Solyc05g010340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4488286-4494949 transcript_region:SL2.40ch05:4488286..4494949+ go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0016301 NbS00016114g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|101; (*SWP) sp|O82255|GRC13_ARATH (e_value=7e-48) Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1;; (*TAIR) AT2G47880.1 (e_value=5e-49) | Symbols: | Glutaredoxin family protein | chr2:19605124-19605432 FORWARD LENGTH=102;; (*ITAG) Solyc06g008760.1.1 (e_value=8e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2680655-2680960 transcript_region:SL2.40ch06:2680655..2680960+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B3F8F2_SOLTU); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00016114g0105.1 protein AED:0.07 eAED:0.07 QI:667|1|1|1|0.66|0.5|4|530|183 NbS00016114g0106.1 protein AED:0.19 eAED:0.19 QI:270|1|1|1|1|1|2|347|211 NbS00015873g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0.66|0.5|4|0|258; (*SWP) sp|Q6H677|EXB14_ORYSJ (e_value=8e-69) Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1;; (*TAIR) AT1G65680.1 (e_value=9e-63) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273;; (*ITAG) Solyc01g090820.1.1 (e_value=5e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76287385-76288548 transcript_region:SL2.40ch01:76287385..76288548+ go_terms:GO:0005576 functional_description:"Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00015873g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|349; (*ITAG) Solyc05g050860.1.1 (e_value=1e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60224551-60225996 transcript_region:SL2.40ch05:60224551..60225996+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00049229g0003.1 protein AED:0.16 eAED:0.17 QI:0|0.75|0.84|1|0.75|0.84|13|213|711; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=8e-25) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT5G03540.1 (e_value=0.0) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc11g006620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00025418g0004.1 protein AED:0.11 eAED:0.11 QI:236|1|1|1|0.78|1|15|280|555; (*SWP) sp|O22757|MLO8_ARATH (e_value=0.0) MLO-like protein 8 OS=Arabidopsis thaliana GN=MLO8 PE=2 SV=2;; (*TAIR) AT2G17480.1 (e_value=0.0) | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO family protein | chr2:7590559-7593768 REVERSE LENGTH=593;; (*ITAG) Solyc00g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6816892-6823417 transcript_region:SL2.40ch00:6816892..6823417+ go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00046659g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|156; (*ITAG) Solyc02g084650.2.1 (e_value=3e-66) genomic_reference:SL2.40ch02 gene_region:42320739-42322410 transcript_region:SL2.40ch02:42320739..42322410+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019180 Oxidoreductase-like protein, N-terminal "; NbS00014890g0004.1 protein AED:0.01 eAED:0.01 QI:191|1|1|1|1|1|3|628|126; (*SWP) sp|B8E2G7|RS16_DICTD (e_value=4e-20) 30S ribosomal protein S16 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rpsP PE=3 SV=1;; (*TAIR) AT5G56940.1 (e_value=9e-61) | Symbols: | Ribosomal protein S16 family protein | chr5:23030879-23032200 FORWARD LENGTH=135;; (*ITAG) Solyc07g008660.2.1 (e_value=5e-72) genomic_reference:SL2.40ch07 gene_region:3593472-3596877 transcript_region:SL2.40ch07:3593472..3596877- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S16 (AHRD V1 ***- B3IWG3_SOLLC); contains Interpro domain(s) IPR000307 Ribosomal protein S16 "; GO:0003735,GO:0005515 NbS00035374g0009.1 protein AED:0.07 eAED:0.07 QI:367|1|1|1|1|1|3|738|233; (*SWP) sp|Q9SN28|ATL7_ARATH (e_value=5e-48) RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1;; (*TAIR) AT4G10150.1 (e_value=4e-49) | Symbols: | RING/U-box superfamily protein | chr4:6328136-6329558 FORWARD LENGTH=236;; (*ITAG) Solyc06g064440.2.1 (e_value=6e-79) genomic_reference:SL2.40ch06 gene_region:36514027-36517636 transcript_region:SL2.40ch06:36514027..36517636- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00035374g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|270; (*SWP) sp|Q84WF5|VAMPL_ARATH (e_value=2e-71) Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1;; (*TAIR) AT4G10170.2 (e_value=8e-79) | Symbols: | SNARE-like superfamily protein | chr4:6344587-6345351 FORWARD LENGTH=254;; (*ITAG) Solyc06g064430.1.1 (e_value=3e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36510375-36511100 transcript_region:SL2.40ch06:36510375..36511100- go_terms:GO:0006810 functional_description:"Vesicle-associated membrane protein 724 (AHRD V1 *--- VA724_ARATH); contains Interpro domain(s) IPR011012 Longin-like "; GO:0006810 NbS00035374g0008.1 protein AED:0.10 eAED:0.10 QI:81|1|1|1|0.88|0.8|10|308|445; (*SWP) sp|Q96EY9|ADAT3_HUMAN (e_value=4e-17) tRNA-specific adenosine deaminase-like protein 3 OS=Homo sapiens GN=ADAT3 PE=1 SV=1;; (*TAIR) AT5G24670.1 (e_value=1e-142) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:8448880-8451046 FORWARD LENGTH=400;; (*ITAG) Solyc03g026100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7892790-7893986 transcript_region:SL2.40ch03:7892790..7893986- go_terms:GO:0046982,GO:0008251 functional_description:"tRNA-specific adenosine deaminase-like protein 3 (AHRD V1 *-** C1BNE2_9MAXI); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0046982,GO:0008251 NbS00050534g0006.1 protein AED:0.19 eAED:0.19 QI:63|0.33|0.25|1|0.33|0.25|4|0|456; (*SWP) sp|Q94EG3|NEC1_NICLS (e_value=3e-106) Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=1e-88) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102380.2.1 (e_value=3e-123) genomic_reference:SL2.40ch01 gene_region:82973903-82974888 transcript_region:SL2.40ch01:82973903..82974888+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O64439_SOLLC); contains Interpro domain(s) IPR019780 Germin, manganese binding site "; GO:0045735,GO:0048046 NbS00011147g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.83|1|1|1|6|0|638; (*TAIR) AT3G48670.2 (e_value=0.0) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647;; (*ITAG) Solyc06g051810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31973284-31982663 transcript_region:SL2.40ch06:31973284..31982663- functional_description:"X1 (Fragment) (AHRD V1 **-- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00011147g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0|1|1|0.75|4|0|282; (*SWP) sp|O48818|EXPA4_ARATH (e_value=5e-141) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=4e-142) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g051800.2.1 (e_value=3e-160) genomic_reference:SL2.40ch06 gene_region:31967807-31969622 transcript_region:SL2.40ch06:31967807..31969622- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- O04359_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00025909g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|0.85|1|1|1|7|0|712; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G63770.1 (e_value=0.0) | Symbols: ATDGK2, DGK2 | diacylglycerol kinase 2 | chr5:25519293-25522404 FORWARD LENGTH=712;; (*ITAG) Solyc05g056420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64867635-64872244 transcript_region:SL2.40ch05:64867635..64872244- go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 1 (AHRD V1 **** A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0004143 NbS00010015g0012.1 protein AED:0.30 eAED:0.33 QI:231|0.66|0.76|0.92|0.75|0.69|13|305|569; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=0.0) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT4G36690.4 (e_value=0.0) | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, large subunit, splicing factor | chr4:17294139-17297609 REVERSE LENGTH=551;; (*ITAG) Solyc02g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29438210-29447611 transcript_region:SL2.40ch02:29438210..29447611+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00010015g0013.1 protein AED:0.58 eAED:0.69 QI:64|0|0.33|1|0|0.33|3|82|21 NbS00010015g0019.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0|0|3|243|88 NbS00010015g0015.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|65|211; (*SWP) sp|O23208|ATB40_ARATH (e_value=5e-66) Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=3;; (*TAIR) AT4G36740.1 (e_value=4e-67) | Symbols: HB-5, ATHB40, HB40 | homeobox protein 40 | chr4:17314649-17316314 REVERSE LENGTH=216;; (*ITAG) Solyc02g085630.2.1 (e_value=1e-88) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00010015g0018.1 protein AED:0.19 eAED:0.19 QI:215|1|1|1|0.81|0.83|12|247|341; (*SWP) sp|P42774|GBF1_ARATH (e_value=3e-80) G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2;; (*TAIR) AT4G36730.2 (e_value=2e-82) | Symbols: GBF1 | G-box binding factor 1 | chr4:17309850-17311752 REVERSE LENGTH=313;; (*ITAG) Solyc02g062950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29468111-29477847 transcript_region:SL2.40ch02:29468111..29477847- go_terms:GO:0005515,GO:0043565 functional_description:"G-box binding factor (AHRD V1 **** Q43449_SOYBN); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0005515,GO:0043565 NbS00007878g0003.1 protein AED:0.00 eAED:0.00 QI:204|1|1|1|1|1|2|275|90; (*ITAG) Solyc04g078030.2.1 (e_value=3e-26) genomic_reference:SL2.40ch04 gene_region:60480081-60481202 transcript_region:SL2.40ch04:60480081..60481202- functional_description:"Unknown Protein (AHRD V1)"; NbS00025007g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|511; (*SWP) sp|Q9M202|ZAT9_ARATH (e_value=5e-14) Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1;; (*TAIR) AT1G26610.1 (e_value=3e-65) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc05g012490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5730302-5731897 transcript_region:SL2.40ch05:5730302..5731897+ go_terms:GO:0003700 functional_description:"Zinc finger protein-like (AHRD V1 *-*- Q9M202_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013412g0007.1 protein AED:0.09 eAED:0.09 QI:8|1|1|1|1|1|2|344|253 NbS00009620g0006.1 protein AED:0.41 eAED:0.49 QI:0|0|0|0.33|0.5|0.66|3|0|133; (*ITAG) Solyc03g034340.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009620g0005.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.25|0|0.25|4|0|177 NbS00052378g0004.1 protein AED:0.41 eAED:0.44 QI:0|0|0|0.5|0|0|2|0|66 NbS00014015g0005.1 protein AED:0.29 eAED:0.29 QI:191|0.90|0.91|1|0.72|0.75|12|0|411; (*SWP) sp|P40222|TXLNA_HUMAN (e_value=2e-19) Alpha-taxilin OS=Homo sapiens GN=TXLNA PE=1 SV=3;; (*TAIR) AT5G50840.1 (e_value=2e-120) | Symbols: | CONTAINS InterPro DOMAIN/s: Taxilin (InterPro:IPR019132); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20685903-20688739 FORWARD LENGTH=404;; (*ITAG) Solyc04g047750.2.1 (e_value=2e-53) genomic_reference:SL2.40ch04 gene_region:36138730-36144091 transcript_region:SL2.40ch04:36138730..36144091+ functional_description:"Alpha-taxilin (AHRD V1 ***- B6TZ42_MAIZE); contains Interpro domain(s) IPR019132 Taxilin "; NbS00028652g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|131; (*SWP) sp|Q3E6Y3|Y1869_ARATH (e_value=1e-43) Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1;; (*TAIR) AT1G28700.1 (e_value=3e-47) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:10083773-10084958 REVERSE LENGTH=338;; (*ITAG) Solyc03g094120.2.1 (e_value=9e-74) genomic_reference:SL2.40ch03 gene_region:49320521-49322475 transcript_region:SL2.40ch03:49320521..49322475- functional_description:"Os03g0849800 protein (Fragment) (AHRD V1 *--- Q0DLS4_ORYSJ)"; NbS00036050g0016.1 protein AED:0.37 eAED:0.37 QI:0|0.37|0.11|1|0.12|0|9|0|477; (*SWP) sp|O81905|SD18_ARATH (e_value=2e-96) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=1e-97) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc02g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38748428-38751481 transcript_region:SL2.40ch02:38748428..38751481- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00036050g0011.1 protein AED:0.10 eAED:0.10 QI:35|1|1|1|1|1|7|229|831; (*SWP) sp|Q9ZT07|RKS1_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3;; (*TAIR) AT1G11340.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:3814116-3817420 REVERSE LENGTH=901;; (*ITAG) Solyc02g079640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38732627-38735517 transcript_region:SL2.40ch02:38732627..38735517+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR000858 S-locus glycoprotein "; GO:0004674 NbS00036050g0013.1 protein AED:0.26 eAED:0.31 QI:0|0.14|0.12|0.87|0.71|0.5|8|0|580; (*SWP) sp|Q9LSQ6|PBP1_ARATH (e_value=1e-28) Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1;; (*TAIR) AT4G28590.1 (e_value=1e-80) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331;; (*ITAG) Solyc02g079730.2.1 (e_value=3e-165) genomic_reference:SL2.40ch02 gene_region:38759779-38761649 transcript_region:SL2.40ch02:38759779..38761649+ functional_description:"Thioredoxin family protein (AHRD V1 ***- B6TC88_MAIZE)"; NbS00036050g0015.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|3|0|228; (*SWP) sp|O64477|Y2913_ARATH (e_value=4e-20) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=3e-21) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc02g079710.2.1 (e_value=7e-67) genomic_reference:SL2.40ch02 gene_region:38748428-38751481 transcript_region:SL2.40ch02:38748428..38751481- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00036050g0017.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|68 NbS00014449g0008.1 protein AED:0.14 eAED:0.14 QI:26|0.71|0.62|1|0.42|0.37|8|469|313; (*TAIR) AT5G01660.1 (e_value=6e-34) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc10g076330.1.1 (e_value=7e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58574547-58578026 transcript_region:SL2.40ch10:58574547..58578026+ functional_description:"Kelch-like protein (AHRD V1 ***- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00014449g0006.1 protein AED:0.31 eAED:0.32 QI:217|0.58|0.53|1|0.91|0.84|13|0|581; (*SWP) sp|Q84K71|MATE2_ARATH (e_value=8e-151) MATE efflux family protein 2, chloroplastic OS=Arabidopsis thaliana GN=DTX44 PE=2 SV=1;; (*TAIR) AT2G38330.1 (e_value=6e-152) | Symbols: | MATE efflux family protein | chr2:16064571-16067318 FORWARD LENGTH=521;; (*ITAG) Solyc10g085340.1.1 (e_value=9e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63874534-63878713 transcript_region:SL2.40ch10:63874534..63878713+ go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7LLI9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00024280g0013.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.33|3|0|387; (*TAIR) AT1G17030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47010.2); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:5822487-5824424 FORWARD LENGTH=502;; (*ITAG) Solyc07g062090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62135492-62137556 transcript_region:SL2.40ch07:62135492..62137556- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00024280g0009.1 protein AED:0.22 eAED:0.22 QI:292|0.87|0.88|1|0.87|0.88|9|307|550; (*SWP) sp|Q9LUC3|MPK19_ARATH (e_value=0.0) Mitogen-activated protein kinase 19 OS=Arabidopsis thaliana GN=MPK19 PE=2 SV=2;; (*TAIR) AT3G14720.1 (e_value=0.0) | Symbols: ATMPK19, MPK19 | MAP kinase 19 | chr3:4946057-4948906 FORWARD LENGTH=598;; (*ITAG) Solyc10g007500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1832683-1838376 transcript_region:SL2.40ch10:1832683..1838376- go_terms:GO:0006468 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 ***- B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024280g0011.1 protein AED:0.04 eAED:0.49 QI:0|0|0|0.66|0.5|0.33|3|0|252; (*TAIR) AT3G14760.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4956440-4957045 FORWARD LENGTH=168;; (*ITAG) Solyc10g007490.1.1 (e_value=2e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:1828352-1829774 transcript_region:SL2.40ch10:1828352..1829774- functional_description:"Unknown Protein (AHRD V1)"; NbS00004484g0008.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.75|0|0.25|4|0|298; (*ITAG) Solyc01g067030.2.1 (e_value=5e-53) genomic_reference:SL2.40ch01 gene_region:67757131-67758593 transcript_region:SL2.40ch01:67757131..67758593- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00002277g0001.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|64 NbS00016436g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|423; (*SWP) sp|Q8BG32|PSD11_MOUSE (e_value=5e-134) 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3;; (*TAIR) AT1G29150.1 (e_value=0.0) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419;; (*ITAG) Solyc05g013030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6145882-6147153 transcript_region:SL2.40ch05:6145882..6147153+ go_terms:GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0004175 NbS00022954g0007.1 protein AED:0.07 eAED:0.08 QI:185|0.5|0.2|1|0.25|0.2|5|0|739; (*SWP) sp|Q9FIE3|VIN3_ARATH (e_value=3e-93) Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2;; (*TAIR) AT4G30200.3 (e_value=2e-176) | Symbols: VEL1, VIL2 | vernalization5/VIN3-like | chr4:14786852-14790070 REVERSE LENGTH=702;; (*ITAG) Solyc07g018270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9970191-9981371 transcript_region:SL2.40ch07:9970191..9981371+ functional_description:"Vernalization insensitive 3 (Fragment) (AHRD V1 *--- C4PFF9_BRARC); contains Interpro domain(s) IPR003961 Fibronectin, type III "; NbS00022954g0008.1 protein AED:0.29 eAED:0.48 QI:178|0|0.33|1|1|0.66|3|391|28 NbS00047949g0002.1 protein AED:0.32 eAED:0.32 QI:209|1|1|1|0.16|0.14|7|269|199; (*SWP) sp|Q99MM4|TRAD1_RAT (e_value=5e-23) TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2;; (*TAIR) AT1G09920.1 (e_value=3e-86) | Symbols: | TRAF-type zinc finger-related | chr1:3224863-3226860 REVERSE LENGTH=192;; (*ITAG) Solyc04g076670.2.1 (e_value=6e-135) genomic_reference:SL2.40ch04 gene_region:59151714-59156914 transcript_region:SL2.40ch04:59151714..59156914- go_terms:GO:0008270 functional_description:"TRAF type zinc finger domain containing 1 (AHRD V1 **-- B6T8M5_MAIZE); contains Interpro domain(s) IPR001293 Zinc finger, TRAF-type "; GO:0008270 NbS00031623g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|115 NbS00031623g0002.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|297; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=3e-45) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=2e-46) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc12g008350.1.1 (e_value=5e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1759910-1760809 transcript_region:SL2.40ch12:1759910..1760809+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00033909g0009.1 protein AED:0.27 eAED:0.28 QI:0|0.2|0.16|0.83|0.8|0.5|6|0|269; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=3e-60) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT1G19170.1 (e_value=3e-130) | Symbols: | Pectin lyase-like superfamily protein | chr1:6616777-6618875 FORWARD LENGTH=506;; (*ITAG) Solyc12g009210.1.1 (e_value=7e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2490735-2496842 transcript_region:SL2.40ch12:2490735..2496842+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00006132g0009.1 protein AED:0.11 eAED:0.11 QI:127|1|1|1|1|1|15|1023|569; (*SWP) sp|P72740|DLDH_SYNY3 (e_value=0.0) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lpdA PE=1 SV=3;; (*TAIR) AT3G16950.1 (e_value=0.0) | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase 1 | chr3:5786761-5790383 REVERSE LENGTH=570;; (*ITAG) Solyc01g100360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82177485-82184781 transcript_region:SL2.40ch01:82177485..82184781- go_terms:GO:0005737,GO:0055114 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- B5LAW5_CAPAN); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005737,GO:0055114 NbS00006132g0006.1 protein AED:0.43 eAED:0.47 QI:0|0|0.25|0.75|1|1|4|530|106 NbS00052312g0003.1 protein AED:0.18 eAED:0.29 QI:0|0|0|1|1|1|2|0|120; (*ITAG) Solyc06g069740.1.1 (e_value=9e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39824282-39824839 transcript_region:SL2.40ch06:39824282..39824839- go_terms:GO:0005515,GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515,GO:0005509 NbS00052312g0004.1 protein AED:0.28 eAED:0.28 QI:166|1|0.66|1|0.5|0.66|3|0|250; (*SWP) sp|P27521|CA4_ARATH (e_value=1e-154) Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1;; (*TAIR) AT3G47470.1 (e_value=9e-156) | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251;; (*ITAG) Solyc06g069730.2.1 (e_value=2e-172) genomic_reference:SL2.40ch06 gene_region:39822568-39823763 transcript_region:SL2.40ch06:39822568..39823763+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 ***- CA4_ARATH); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00014519g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|106; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=2e-45) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=9e-43) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066980.2.1 (e_value=3e-60) genomic_reference:SL2.40ch01 gene_region:67684096-67684727 transcript_region:SL2.40ch01:67684096..67684727- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00014519g0005.1 protein AED:0.31 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|323; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=1e-131) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=9e-133) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014519g0003.1 protein AED:0.45 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|239; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=3e-50) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=2e-51) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=3e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014519g0004.1 protein AED:0.42 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|244; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=1e-82) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=8e-84) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=9e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011507g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|298; (*SWP) sp|Q39688|EP1G_DAUCA (e_value=3e-97) Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1;; (*TAIR) AT1G78830.1 (e_value=1e-85) | Symbols: | Curculin-like (mannose-binding) lectin family protein | chr1:29637141-29638508 REVERSE LENGTH=455;; (*ITAG) Solyc07g062480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62424905-62425798 transcript_region:SL2.40ch07:62424905..62425798- go_terms:GO:0005529 functional_description:"S-locus glycoprotein (Fragment) (AHRD V1 *--- Q84KU4_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00011507g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|298; (*SWP) sp|Q39688|EP1G_DAUCA (e_value=2e-87) Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1;; (*TAIR) AT1G78850.1 (e_value=3e-79) | Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr1:29642072-29643397 REVERSE LENGTH=441;; (*ITAG) Solyc07g062480.1.1 (e_value=1e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62424905-62425798 transcript_region:SL2.40ch07:62424905..62425798- go_terms:GO:0005529 functional_description:"S-locus glycoprotein (Fragment) (AHRD V1 *--- Q84KU4_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00008286g0004.1 protein AED:0.25 eAED:0.25 QI:13|0.92|0.93|1|0.92|0.93|15|399|707; (*SWP) sp|P0CO78|GEM1_CRYNJ (e_value=5e-137) Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1;; (*TAIR) AT3G63150.1 (e_value=0.0) | Symbols: MIRO2, ATCBG | MIRO-related GTP-ase 2 | chr3:23329200-23332692 REVERSE LENGTH=643;; (*ITAG) Solyc09g065130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58595292-58603131 transcript_region:SL2.40ch09:58595292..58603131+ go_terms:GO:0003924 functional_description:"Mitochondrial Rho GTPase 1 (AHRD V1 **** B2WA10_PYRTR); contains Interpro domain(s) IPR013567 EF hand associated, type-2 "; GO:0003924 NbS00046028g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|284; (*SWP) sp|P43287|PIP22_ARATH (e_value=8e-168) Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2;; (*TAIR) AT2G37170.1 (e_value=6e-169) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc09g007760.2.1 (e_value=6e-170) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00046028g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.85|0.86|1|0.57|0.73|15|0|505; (*SWP) sp|Q5ZLD7|VPS53_CHICK (e_value=5e-58) Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus GN=VPS53 PE=2 SV=1;; (*TAIR) AT1G50500.1 (e_value=0.0) | Symbols: HIT1, ATVPS53, VPS53 | Membrane trafficking VPS53 family protein | chr1:18708217-18715597 REVERSE LENGTH=828;; (*ITAG) Solyc04g049490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41235273-41255192 transcript_region:SL2.40ch04:41235273..41255192+ go_terms:GO:0005215 functional_description:"Vacuolar protein sorting-associated protein 53 (AHRD V1 **-- D0NTZ4_PHYIN); contains Interpro domain(s) IPR007234 Vps53-like, N-terminal "; GO:0005215 NbS00008774g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|207; (*TAIR) AT1G05420.1 (e_value=6e-21) | Symbols: ATOFP12, OFP12 | ovate family protein 12 | chr1:1590073-1590753 FORWARD LENGTH=226;; (*ITAG) Solyc09g082080.1.1 (e_value=2e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:63313130-63313765 transcript_region:SL2.40ch09:63313130..63313765- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6UEQ7_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00050320g0012.1 protein AED:0.03 eAED:0.03 QI:198|0.75|0.8|1|0.75|0.8|5|131|582; (*SWP) sp|Q9SIN1|TTL3_ARATH (e_value=5e-97) Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2;; (*TAIR) AT5G65160.1 (e_value=1e-135) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g073940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57543061-57545105 transcript_region:SL2.40ch04:57543061..57545105- go_terms:GO:0030544,GO:0051082 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MT84_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544,GO:0051082 NbS00000487g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.84|0.75|1|0.89|0.85|20|0|1210; (*SWP) sp|Q9C0X8|RRP12_SCHPO (e_value=3e-32) Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB8E5.07c PE=2 SV=1;; (*TAIR) AT4G23540.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:12280547-12286420 REVERSE LENGTH=1131;; (*ITAG) Solyc04g015940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6462961-6486905 transcript_region:SL2.40ch04:6462961..6486905+ go_terms:GO:0005488 functional_description:"Ribosomal RNA-processing protein (AHRD V1 *--- C1GNI2_PARBA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00039178g0020.1 protein AED:0.19 eAED:0.19 QI:155|1|1|1|1|1|4|307|193; (*SWP) sp|Q6PC19|SSU72_DANRE (e_value=6e-69) RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1;; (*TAIR) AT1G73820.1 (e_value=9e-121) | Symbols: | Ssu72-like family protein | chr1:27755740-27757158 REVERSE LENGTH=193;; (*ITAG) Solyc03g097990.2.1 (e_value=3e-138) genomic_reference:SL2.40ch03 gene_region:53797571-53802108 transcript_region:SL2.40ch03:53797571..53802108- go_terms:GO:0042802,GO:0004725 functional_description:"RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (AHRD V1 **** C1BX60_ESOLU); contains Interpro domain(s) IPR006811 RNA polymerase II subunit A "; GO:0042802,GO:0004725 NbS00039178g0021.1 protein AED:0.22 eAED:0.22 QI:0|0.83|0.57|1|0.83|0.71|7|576|866; (*SWP) sp|P93163|GPA2_SOYBN (e_value=3e-42) Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1;; (*TAIR) AT1G31930.3 (e_value=0.0) | Symbols: XLG3 | extra-large GTP-binding protein 3 | chr1:11465832-11468961 FORWARD LENGTH=848;; (*ITAG) Solyc03g097980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53790071-53796491 transcript_region:SL2.40ch03:53790071..53796491- go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00039178g0004.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|350; (*TAIR) AT2G27660.1 (e_value=2e-53) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc03g097960.1.1 (e_value=3e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53783330-53784391 transcript_region:SL2.40ch03:53783330..53784391- go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0019992,GO:0020037 NbS00039178g0024.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|164; (*SWP) sp|Q9FJP3|RK29_ARATH (e_value=7e-58) 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1;; (*TAIR) AT5G65220.1 (e_value=5e-59) | Symbols: | Ribosomal L29 family protein | chr5:26061301-26062506 FORWARD LENGTH=173;; (*ITAG) Solyc03g097950.2.1 (e_value=2e-85) genomic_reference:SL2.40ch03 gene_region:53779606-53781960 transcript_region:SL2.40ch03:53779606..53781960+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L29 (AHRD V1 ***- B6TS58_MAIZE); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0005840 NbS00039178g0030.1 protein AED:0.25 eAED:0.27 QI:64|0.90|0.83|1|0.54|0.66|12|130|715; (*SWP) sp|Q9M8S6|SKOR_ARATH (e_value=0.0) Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1;; (*TAIR) AT3G02850.1 (e_value=0.0) | Symbols: SKOR | STELAR K+ outward rectifier | chr3:619701-623473 REVERSE LENGTH=828;; (*ITAG) Solyc03g097940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53768344-53779007 transcript_region:SL2.40ch03:53768344..53779007+ go_terms:GO:0005242 functional_description:"Potassium channel (AHRD V1 **** O04242_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005242 NbS00039178g0023.1 protein AED:0.29 eAED:0.29 QI:181|1|0.75|1|0.33|0.5|4|282|129; (*TAIR) AT3G17780.1 (e_value=7e-59) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated 31-like (TAIR:AT1G48440.1); Has 102 Blast hits to 102 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6087016-6088128 FORWARD LENGTH=129;; (*ITAG) Solyc03g097970.2.1 (e_value=8e-81) genomic_reference:SL2.40ch03 gene_region:53785982-53789328 transcript_region:SL2.40ch03:53785982..53789328+ go_terms:GO:0005515 functional_description:"Erwinia induced protein 2 (AHRD V1 ***- B4FAP8_MAIZE)"; GO:0005515 NbS00038016g0001.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0.45|1|1|1|11|0|1837; (*SWP) sp|P34756|FAB1_YEAST (e_value=2e-77) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc03g123570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64438202-64447839 transcript_region:SL2.40ch03:64438202..64447839+ go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-* D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbS00018566g0006.1 protein AED:0.18 eAED:0.38 QI:0|0|0|1|0.5|0.6|5|0|145; (*SWP) sp|Q54CM0|PPT3_DICDI (e_value=1e-16) Palmitoyl-protein thioesterase 3 OS=Dictyostelium discoideum GN=ppt3 PE=3 SV=1;; (*TAIR) AT3G60340.2 (e_value=4e-46) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc08g078260.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59249310-59252580 transcript_region:SL2.40ch08:59249310..59252580+ go_terms:GO:0008474 functional_description:"Palmitoyl protein thioesterase family protein (AHRD V1 **** D7LRP2_ARALY); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00006472g0002.1 protein AED:0.00 eAED:0.00 QI:403|1|1|1|0|0|2|270|76 NbS00035593g0004.1 protein AED:0.00 eAED:0.00 QI:41|1|1|1|0.33|0.25|4|21|223; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=3e-59) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61810.1 (e_value=1e-48) | Symbols: BGLU45 | beta-glucosidase 45 | chr1:22830035-22832813 FORWARD LENGTH=520;; (*ITAG) Solyc07g063370.2.1 (e_value=2e-106) genomic_reference:SL2.40ch07 gene_region:63074862-63078665 transcript_region:SL2.40ch07:63074862..63078665- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00036156g0003.1 protein AED:0.00 eAED:0.00 QI:258|1|1|1|1|1|2|71|431; (*SWP) sp|Q9LSF1|OXI1_ARATH (e_value=3e-155) Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana GN=OXI1 PE=1 SV=1;; (*TAIR) AT3G25250.1 (e_value=2e-156) | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr3:9195566-9196949 FORWARD LENGTH=421;; (*ITAG) Solyc09g056430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:44700279-44701562 transcript_region:SL2.40ch09:44700279..44701562- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MVG5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032254g0001.1 protein AED:0.09 eAED:0.09 QI:407|0.85|0.75|1|1|1|8|247|219; (*SWP) sp|Q54T49|APT11_DICDI (e_value=2e-24) Acyl-protein thioesterase 1 homolog 1 OS=Dictyostelium discoideum GN=DDB_G0282005 PE=2 SV=1;; (*TAIR) AT5G20060.3 (e_value=6e-104) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6776800-6779447 FORWARD LENGTH=252;; (*ITAG) Solyc06g067950.2.1 (e_value=1e-133) genomic_reference:SL2.40ch06 gene_region:38509716-38512582 transcript_region:SL2.40ch06:38509716..38512582+ go_terms:GO:0008474,GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0008474,GO:0004622 NbS00032254g0009.1 protein AED:0.21 eAED:0.21 QI:184|0.83|0.85|1|0.5|0.57|7|220|163; (*SWP) sp|Q8LBK6|GRS15_ARATH (e_value=1e-71) Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2;; (*TAIR) AT3G15660.2 (e_value=8e-73) | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169;; (*ITAG) Solyc06g067960.2.1 (e_value=2e-108) genomic_reference:SL2.40ch06 gene_region:38512806-38516407 transcript_region:SL2.40ch06:38512806..38516407- go_terms:GO:0046872 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7L4W4_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0046872 NbS00032254g0003.1 protein AED:0.33 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|269; (*TAIR) AT3G25910.1 (e_value=6e-38) | Symbols: | Protein of unknown function (DUF1644) | chr3:9489836-9490954 FORWARD LENGTH=372;; (*ITAG) Solyc06g067970.1.1 (e_value=1e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38517926-38518774 transcript_region:SL2.40ch06:38517926..38518774- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00054634g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|162; (*SWP) sp|Q8VYI9|NLTL5_ARATH (e_value=8e-15) Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=2e-37) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g082280.2.1 (e_value=1e-81) genomic_reference:SL2.40ch09 gene_region:63458128-63460205 transcript_region:SL2.40ch09:63458128..63460205- functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q5MJA5_CAPAN); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00022024g0003.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0|0|2|0|229; (*TAIR) AT5G14280.1 (e_value=5e-90) | Symbols: | DNA-binding storekeeper protein-related | chr5:4609123-4611444 FORWARD LENGTH=572;; (*ITAG) Solyc02g068010.2.1 (e_value=1e-108) genomic_reference:SL2.40ch02 gene_region:32650164-32651779 transcript_region:SL2.40ch02:32650164..32651779- go_terms:GO:0016021 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *-*- Q5IRD2_9ROSI); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00050669g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|3|317|298; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=4e-152) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=3e-153) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc09g008820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2243656-2248916 transcript_region:SL2.40ch09:2243656..2248916- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00035857g0003.1 protein AED:0.16 eAED:0.16 QI:92|1|1|1|0.66|0.57|7|245|366; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-49) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G64700.1 (e_value=1e-110) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:25865190-25866845 REVERSE LENGTH=359;; (*ITAG) Solyc00g052940.2.1 (e_value=1e-142) genomic_reference:SL2.40ch00 gene_region:13784266-13787465 transcript_region:SL2.40ch00:13784266..13787465- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 **-- B6TIX8_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00057969g0003.1 protein AED:0.03 eAED:0.03 QI:104|1|1|1|1|1|4|72|469; (*SWP) sp|Q42881|1A13_SOLLC (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1;; (*TAIR) AT4G37770.1 (e_value=0.0) | Symbols: ACS8 | 1-amino-cyclopropane-1-carboxylate synthase 8 | chr4:17752222-17753925 FORWARD LENGTH=469;; (*ITAG) Solyc03g043890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11536608-11538987 transcript_region:SL2.40ch03:11536608..11538987+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM0_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00011168g0004.1 protein AED:0.06 eAED:0.06 QI:290|1|0.88|1|1|1|9|343|829; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc11g069720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51412028-51417585 transcript_region:SL2.40ch11:51412028..51417585+ go_terms:GO:0016787,GO:0005524,GO:0005975,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0005975,GO:0017111,GO:0005488 NbS00018760g0004.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.66|0.83|0.8|0.83|6|135|311; (*SWP) sp|Q41640|RAB7_VIGAC (e_value=2e-107) Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1;; (*TAIR) AT4G09720.1 (e_value=3e-99) | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A | chr4:6133101-6134959 FORWARD LENGTH=206;; (*ITAG) Solyc04g072060.2.1 (e_value=5e-116) genomic_reference:SL2.40ch04 gene_region:56710003-56720195 transcript_region:SL2.40ch04:56710003..56720195- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-7a (AHRD V1 ***- C1C1X4_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00014833g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|200; (*SWP) sp|O23044|PER3_ARATH (e_value=9e-95) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=7e-96) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=7e-117) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00001158g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|283; (*TAIR) AT5G11540.1 (e_value=8e-144) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr5:3703002-3704981 REVERSE LENGTH=585;; (*ITAG) Solyc08g068420.2.1 (e_value=1e-178) genomic_reference:SL2.40ch08 gene_region:54775107-54778506 transcript_region:SL2.40ch08:54775107..54778506- go_terms:GO:0016020,GO:0050660 functional_description:"FAD-linked oxidoreductase (AHRD V1 ***- C7Q9M7_CATAD); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00038021g0006.1 protein AED:0.07 eAED:0.07 QI:127|1|1|1|1|1|3|117|149; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=3e-26) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=2e-27) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc01g100220.2.1 (e_value=4e-56) genomic_reference:SL2.40ch01 gene_region:82030138-82031017 transcript_region:SL2.40ch01:82030138..82031017- go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00038021g0005.1 protein AED:0.08 eAED:0.08 QI:151|1|0.77|1|1|1|9|0|562; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc08g041890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00038021g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|228; (*SWP) sp|Q8LD27|PSB6_ARATH (e_value=1e-41) Proteasome subunit beta type-6 OS=Arabidopsis thaliana GN=PBA1 PE=1 SV=2;; (*TAIR) AT4G31300.3 (e_value=1e-42) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233;; (*ITAG) Solyc07g016200.2.1 (e_value=3e-40) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00033560g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|0.5|1|1|4|0|533; (*TAIR) AT2G46550.1 (e_value=9e-66) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19112264-19113457 REVERSE LENGTH=397;; (*ITAG) Solyc01g096100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78959267-78963672 transcript_region:SL2.40ch01:78959267..78963672- functional_description:"AT2G46550 protein (Fragment) (AHRD V1 ***- B9DHY8_ARATH)"; NbS00033560g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.81|0.70|1|0.87|0.88|17|173|1544; (*SWP) sp|Q6PNC0|DMXL1_MOUSE (e_value=4e-34) DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1;; (*TAIR) AT2G46560.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:19115570-19125856 REVERSE LENGTH=2513;; (*ITAG) Solyc01g096110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78967477-78987548 transcript_region:SL2.40ch01:78967477..78987548- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 *--- A1CP90_ASPCL); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00033560g0012.1 protein AED:0.04 eAED:0.47 QI:53|0.33|0.5|1|0.33|0.25|4|0|472; (*TAIR) AT2G46560.1 (e_value=6e-76) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:19115570-19125856 REVERSE LENGTH=2513;; (*ITAG) Solyc01g096110.2.1 (e_value=5e-134) genomic_reference:SL2.40ch01 gene_region:78967477-78987548 transcript_region:SL2.40ch01:78967477..78987548- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 *--- A1CP90_ASPCL); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00003134g0012.1 protein AED:0.18 eAED:0.18 QI:296|0.71|0.75|1|0.14|0.25|8|349|251 NbS00003134g0013.1 protein AED:0.23 eAED:0.37 QI:0|0|0.33|0.66|0|0|3|498|153; (*SWP) sp|P19173|COX5C_IPOBA (e_value=5e-25) Cytochrome c oxidase subunit 5C OS=Ipomoea batatas GN=COX5C PE=1 SV=3;; (*TAIR) AT5G40382.1 (e_value=6e-22) | Symbols: | Cytochrome c oxidase subunit Vc family protein | chr5:16155486-16155683 REVERSE LENGTH=65;; (*ITAG) Solyc01g079420.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:71005941-71009193 transcript_region:SL2.40ch01:71005941..71009193+ go_terms:GO:0005746 functional_description:"Cytochrome c oxidase subunit VC family protein (AHRD V1 *-*- D7LT63_ARALY); contains Interpro domain(s) IPR008432 Cytochrome c oxidase subunit Vc "; GO:0005746 NbS00003134g0014.1 protein AED:0.13 eAED:0.13 QI:0|0.62|0.66|0.88|0.62|0.55|9|173|325; (*SWP) sp|Q02166|TRPD_ARATH (e_value=6e-141) Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G17990.1 (e_value=4e-142) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444;; (*ITAG) Solyc12g035190.1.1 (e_value=4e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23790104-23797675 transcript_region:SL2.40ch12:23790104..23797675+ go_terms:GO:0008152,GO:0000162 functional_description:"Anthranilate phosphoribosyltransferase (AHRD V1 ***- A8IBN0_CHLRE); contains Interpro domain(s) IPR005940 Anthranilate phosphoribosyl transferase "; GO:0008152,GO:0000162 NbS00003134g0011.1 protein AED:0.32 eAED:0.33 QI:0|0.75|0.33|0.88|0.75|0.66|9|0|720; (*SWP) sp|P46942|DB10_NICSY (e_value=0.0) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G01540.1 (e_value=0.0) | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=618;; (*ITAG) Solyc12g035130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23233712-23239726 transcript_region:SL2.40ch12:23233712..23239726+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00003134g0103.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|186 NbS00003134g0111.1 protein AED:0.28 eAED:0.28 QI:211|0.91|0.92|1|0.91|0.84|13|41|409 NbS00003134g0212.1 protein AED:0.20 eAED:0.20 QI:129|1|1|1|0.66|1|4|284|176 NbS00003134g0203.1 protein AED:0.15 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|209 NbS00014360g0011.1 protein AED:0.16 eAED:0.16 QI:403|0.5|0.2|1|0|0.4|5|0|190; (*TAIR) AT4G24090.1 (e_value=4e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr4:12512742-12514467 FORWARD LENGTH=308;; (*ITAG) Solyc08g083010.2.1 (e_value=3e-75) genomic_reference:SL2.40ch08 gene_region:62781441-62784381 transcript_region:SL2.40ch08:62781441..62784381+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q00TF3_OSTTA)"; NbS00014360g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|377; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=2e-16) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=2e-17) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc10g009450.1.1 (e_value=7e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:3546604-3547668 transcript_region:SL2.40ch10:3546604..3547668+ functional_description:"F-box family protein (AHRD V1 **-- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00014360g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.62|1|0.71|0.75|8|394|325; (*SWP) sp|Q505J9|ATAD1_RAT (e_value=2e-82) ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus GN=Atad1 PE=1 SV=1;; (*TAIR) AT5G53540.1 (e_value=6e-151) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403;; (*ITAG) Solyc08g083020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62784688-62787084 transcript_region:SL2.40ch08:62784688..62787084- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 **-- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00056919g0001.1 protein AED:0.17 eAED:0.17 QI:148|0.8|0.83|1|0.8|0.83|6|459|79; (*SWP) sp|A1XQR9|RUXE_PIG (e_value=1e-33) Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1;; (*TAIR) AT4G30330.1 (e_value=1e-43) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88;; (*ITAG) Solyc03g098470.2.1 (e_value=3e-46) genomic_reference:SL2.40ch03 gene_region:54202388-54206465 transcript_region:SL2.40ch03:54202388..54206465- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein E (AHRD V1 ***- B6SXC3_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00000464g0007.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0|0|3|0|213 NbS00000464g0008.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|106; (*ITAG) Solyc09g015800.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11015336-11017255 transcript_region:SL2.40ch09:11015336..11017255- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00058144g0001.1 protein AED:0.30 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|88; (*ITAG) Solyc01g102430.2.1 (e_value=2e-21) genomic_reference:SL2.40ch01 gene_region:83005452-83005896 transcript_region:SL2.40ch01:83005452..83005896- functional_description:"Unknown Protein (AHRD V1)"; NbS00019892g0009.1 protein AED:0.28 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|155; (*TAIR) AT4G22320.2 (e_value=2e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1). | chr4:11793129-11794596 REVERSE LENGTH=237;; (*ITAG) Solyc04g014710.2.1 (e_value=3e-74) genomic_reference:SL2.40ch04 gene_region:4972023-4976850 transcript_region:SL2.40ch04:4972023..4976850- functional_description:"cDNA clone 002-156-B04 full insert sequence (AHRD V1 *-*- B7F1Y4_ORYSJ)"; NbS00019892g0001.1 protein AED:0.18 eAED:0.18 QI:331|1|0.5|1|0|0|2|0|159; (*SWP) sp|O65373|BAG5_ARATH (e_value=2e-42) BAG family molecular chaperone regulator 5, mitochondrial OS=Arabidopsis thaliana GN=BAG5 PE=1 SV=1;; (*TAIR) AT1G12060.1 (e_value=1e-43) | Symbols: ATBAG5, BAG5 | BCL-2-associated athanogene 5 | chr1:4076334-4076981 FORWARD LENGTH=215;; (*ITAG) Solyc04g014740.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:5000220-5000519 transcript_region:SL2.40ch04:5000220..5000519+ go_terms:GO:0006915 functional_description:"Bcl-2-associated athanogene-like protein (AHRD V1 *-*- D1MIX4_VITVI); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbC25928883g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|80; (*TAIR) AT1G64850.1 (e_value=4e-33) | Symbols: | Calcium-binding EF hand family protein | chr1:24096548-24097574 REVERSE LENGTH=162;; (*ITAG) Solyc10g061870.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:53266087-53269421 transcript_region:SL2.40ch10:53266087..53269421- go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 **** D7KZ13_ARALY); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00035980g0005.1 protein AED:0.15 eAED:0.16 QI:69|0.6|0.33|1|0.8|0.83|6|0|662; (*TAIR) AT4G15820.1 (e_value=1e-21) | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). | chr4:8992970-8995022 FORWARD LENGTH=460;; (*ITAG) Solyc01g080760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72490432-72498057 transcript_region:SL2.40ch01:72490432..72498057- functional_description:"Unknown Protein (AHRD V1)"; NbS00035980g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.6|1|1|1|5|134|239; (*TAIR) AT4G15830.1 (e_value=8e-75) | Symbols: | ARM repeat superfamily protein | chr4:8995285-8996548 REVERSE LENGTH=296;; (*ITAG) Solyc01g080750.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:72488752-72490161 transcript_region:SL2.40ch01:72488752..72490161+ go_terms:GO:0005488 functional_description:"HEAT repeat family protein (AHRD V1 **-- B4FX70_MAIZE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00017033g0010.1 protein AED:0.23 eAED:0.23 QI:414|0.95|0.95|1|0.71|0.68|22|948|586; (*SWP) sp|Q922D4|PP6R3_MOUSE (e_value=8e-63) Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus GN=Ppp6r3 PE=1 SV=1;; (*TAIR) AT3G45190.1 (e_value=0.0) | Symbols: | SIT4 phosphatase-associated family protein | chr3:16541994-16548161 REVERSE LENGTH=789;; (*ITAG) Solyc06g075160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43026955-43036498 transcript_region:SL2.40ch06:43026955..43036498- functional_description:"Serine/threonine-protein phosphatase 6 regulatory subunit 3 (AHRD V1 *--- SAPS3_HUMAN); contains Interpro domain(s) IPR007587 SIT4 phosphatase-associated protein "; NbS00025510g0002.1 protein AED:0.03 eAED:0.03 QI:59|1|1|1|1|1|2|553|416; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=9e-27) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT3G50930.1 (e_value=1e-121) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc02g084910.2.1 (e_value=7e-165) genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbC24481635g0001.1 protein AED:0.17 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|84; (*SWP) sp|Q9C7U5|E132_ARATH (e_value=2e-42) Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2;; (*TAIR) AT1G66250.1 (e_value=1e-43) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24693063-24695416 FORWARD LENGTH=505;; (*ITAG) Solyc04g007910.2.1 (e_value=5e-50) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00005426g0004.1 protein AED:0.01 eAED:0.01 QI:158|1|1|1|0|0.5|2|256|231; (*TAIR) AT2G15220.1 (e_value=1e-83) | Symbols: | Plant basic secretory protein (BSP) family protein | chr2:6608689-6609366 FORWARD LENGTH=225;; (*ITAG) Solyc01g107520.2.1 (e_value=1e-143) genomic_reference:SL2.40ch01 gene_region:86809122-86810084 transcript_region:SL2.40ch01:86809122..86810084+ functional_description:"PBSP domain-containing protein (AHRD V1 **-- C9S7G7_VERA1); contains Interpro domain(s) IPR007541 Plant Basic Secretory Protein "; NbS00005426g0113.1 protein AED:0.00 eAED:0.00 QI:287|0.5|0.33|1|0.5|0.33|3|775|247 NbS00005426g0112.1 protein AED:0.33 eAED:0.33 QI:89|0|0.5|1|0|0|2|0|73 NbS00039785g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.4|1|0.88|0.8|10|0|585; (*SWP) sp|Q08891|FACR2_ARATH (e_value=0.0) Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2;; (*TAIR) AT3G11980.1 (e_value=0.0) | Symbols: MS2, FAR2 | Jojoba acyl CoA reductase-related male sterility protein | chr3:3814484-3816927 FORWARD LENGTH=616;; (*ITAG) Solyc03g051960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19429392-19432048 transcript_region:SL2.40ch03:19429392..19432048+ go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **-* Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00039785g0005.1 protein AED:0.20 eAED:0.20 QI:281|1|1|1|1|1|8|145|407; (*SWP) sp|Q9P6N5|DS1PP_SCHPO (e_value=7e-18) Dihydrosphingosine 1-phosphate phosphatase C823.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.11 PE=2 SV=1;; (*TAIR) AT3G58490.1 (e_value=0.0) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr3:21633065-21635057 FORWARD LENGTH=416;; (*ITAG) Solyc03g051970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19432177-19436424 transcript_region:SL2.40ch03:19432177..19436424- go_terms:GO:0016020 functional_description:"Sphingosine-1-phosphate phosphatase (AHRD V1 *-*- A8P551_COPC7); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020 NbS00029696g0012.1 protein AED:0.22 eAED:0.26 QI:35|0.6|0.83|1|1|1|6|330|543; (*TAIR) AT1G30320.1 (e_value=4e-81) | Symbols: | Remorin family protein | chr1:10680348-10682852 FORWARD LENGTH=509;; (*ITAG) Solyc08g045640.2.1 (e_value=3e-114) genomic_reference:SL2.40ch08 gene_region:35144163-35146943 transcript_region:SL2.40ch08:35144163..35146943+ go_terms:GO:0003677 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *--* Q42051_ARATH); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00029696g0013.1 protein AED:0.18 eAED:0.18 QI:165|0.66|0.75|1|0.66|0.5|4|367|116; (*TAIR) AT4G18400.1 (e_value=3e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10170024-10171221 REVERSE LENGTH=107;; (*ITAG) Solyc08g022120.2.1 (e_value=5e-35) genomic_reference:SL2.40ch08 gene_region:12254716-12257910 transcript_region:SL2.40ch08:12254716..12257910- functional_description:"Unknown Protein (AHRD V1)"; NbS00029696g0014.1 protein AED:0.15 eAED:0.20 QI:0|0.66|0.57|1|0.83|0.57|7|0|335; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=2e-158) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1;; (*TAIR) AT1G72280.1 (e_value=2e-159) | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469;; (*ITAG) Solyc07g056390.2.1 (e_value=9e-165) genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 "; GO:0015035 NbS00037845g0001.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|1|1|2|0|227; (*SWP) sp|Q9M1K3|SIP21_ARATH (e_value=2e-68) Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1;; (*TAIR) AT3G56950.1 (e_value=2e-69) | Symbols: SIP2;1, SIP2 | small and basic intrinsic protein 2;1 | chr3:21078586-21079644 REVERSE LENGTH=237;; (*ITAG) Solyc01g056720.2.1 (e_value=7e-90) genomic_reference:SL2.40ch01 gene_region:49182437-49192481 transcript_region:SL2.40ch01:49182437..49192481- go_terms:GO:0015250 functional_description:"Aquaporin SIP12 (AHRD V1 ***- D8FSL5_GOSHI); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00037845g0004.1 protein AED:0.13 eAED:0.13 QI:506|1|1|1|0.85|0.75|8|307|622; (*SWP) sp|Q38870|CDPK2_ARATH (e_value=0.0) Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1;; (*TAIR) AT3G10660.1 (e_value=0.0) | Symbols: CPK2, ATCPK2 | calmodulin-domain protein kinase cdpk isoform 2 | chr3:3331599-3334268 REVERSE LENGTH=646;; (*ITAG) Solyc10g081740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62082038-62086600 transcript_region:SL2.40ch10:62082038..62086600- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium dependent protein kinase 1 (AHRD V1 ***- B9HVI0_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00038519g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.4|1|0.75|0.8|5|0|607; (*SWP) sp|P29057|HMDH1_HEVBR (e_value=0.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=0.0) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40528275-40531424 transcript_region:SL2.40ch02:40528275..40531424- go_terms:GO:0042282 functional_description:"Hydroxy-methylglutaryl-coenzyme A reductase (AHRD V1 **** O48624_TOBAC); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00025315g0004.1 protein AED:0.42 eAED:0.42 QI:116|0.66|0.75|1|0.33|0.25|4|0|180; (*TAIR) AT2G20725.1 (e_value=7e-37) | Symbols: | CAAX amino terminal protease family protein | chr2:8934113-8935426 REVERSE LENGTH=301; NbS00020268g0004.1 protein AED:0.37 eAED:0.37 QI:100|1|1|1|1|1|6|421|274; (*SWP) sp|P31166|APT1_ARATH (e_value=1e-89) Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2;; (*TAIR) AT1G27450.1 (e_value=1e-90) | Symbols: APT1, ATAPT1 | adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243;; (*ITAG) Solyc04g077970.2.1 (e_value=4e-131) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00029884g0007.1 protein AED:0.42 eAED:0.42 QI:293|0.5|0.66|1|0.5|0.66|3|0|68; (*SWP) sp|Q4V8W7|UBTD1_DANRE (e_value=2e-14) Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1;; (*TAIR) AT1G53400.1 (e_value=7e-34) | Symbols: | Ubiquitin domain-containing protein | chr1:19925009-19926400 FORWARD LENGTH=114;; (*ITAG) Solyc03g006020.2.1 (e_value=5e-36) genomic_reference:SL2.40ch03 gene_region:687640-692338 transcript_region:SL2.40ch03:687640..692338- go_terms:GO:0005515 functional_description:"Ubiquitin domain containing 1 (AHRD V1 ***- B6T693_MAIZE)"; GO:0005515 NbS00029884g0006.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|157; (*SWP) sp|O04904|PYRC_ARATH (e_value=1e-70) Dihydroorotase, mitochondrial OS=Arabidopsis thaliana GN=PYR4 PE=2 SV=1;; (*TAIR) AT4G22930.1 (e_value=9e-72) | Symbols: PYR4, DHOASE | pyrimidin 4 | chr4:12019315-12021200 FORWARD LENGTH=377; NbS00027139g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|174; (*SWP) sp|P48978|PGLR_MALDO (e_value=7e-35) Polygalacturonase OS=Malus domestica PE=2 SV=1;; (*TAIR) AT2G43890.1 (e_value=4e-35) | Symbols: | Pectin lyase-like superfamily protein | chr2:18176924-18178390 FORWARD LENGTH=392;; (*ITAG) Solyc12g009420.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2697739-2702193 transcript_region:SL2.40ch12:2697739..2702193- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **** O81246_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00053605g0004.1 protein AED:0.04 eAED:0.04 QI:290|0.33|0.75|0.75|0|0|4|338|31 NbS00055512g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|104; (*TAIR) AT5G41761.1 (e_value=4e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc07g065410.1.1 (e_value=3e-38) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64402753-64403058 transcript_region:SL2.40ch07:64402753..64403058+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039818g0008.1 protein AED:0.14 eAED:0.14 QI:236|1|0.8|1|0.5|0.6|5|0|189; (*SWP) sp|O49841|RAC2A_ARATH (e_value=1e-94) Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1;; (*TAIR) AT5G03530.1 (e_value=1e-95) | Symbols: ATRAB ALPHA, ATRAB, ATRAB18B, ATRABC2A, RABC2A | RAB GTPase homolog C2A | chr5:885741-887061 REVERSE LENGTH=210;; (*ITAG) Solyc11g008020.1.1 (e_value=3e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2238213-2241626 transcript_region:SL2.40ch11:2238213..2241626+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TSE5_MAIZE); contains Interpro domain(s) IPR015598 Rab18 "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00039818g0011.1 protein AED:0.16 eAED:0.19 QI:0|0.12|0.11|1|0.25|0.44|9|0|434; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=2e-91) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT5G66920.1 (e_value=1e-93) | Symbols: sks17 | SKU5 similar 17 | chr5:26722963-26725370 FORWARD LENGTH=546;; (*ITAG) Solyc11g008030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2243066-2250910 transcript_region:SL2.40ch11:2243066..2250910+ go_terms:GO:0055114 functional_description:"Laccase-16 (AHRD V1 **-- LAC16_ARATH); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00000989g0009.1 protein AED:0.01 eAED:0.01 QI:73|1|1|1|1|1|2|183|138; (*TAIR) AT4G27590.1 (e_value=2e-49) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:13771224-13771790 FORWARD LENGTH=156;; (*ITAG) Solyc03g080110.2.1 (e_value=3e-65) genomic_reference:SL2.40ch03 gene_region:45559184-45560658 transcript_region:SL2.40ch03:45559184..45560658+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 *-*- B6TZ00_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00000989g0010.1 protein AED:0.06 eAED:0.07 QI:0|1|0|1|1|0.5|2|0|114; (*TAIR) AT5G24580.2 (e_value=4e-39) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=318;; (*ITAG) Solyc03g080100.2.1 (e_value=9e-47) genomic_reference:SL2.40ch03 gene_region:45553244-45555756 transcript_region:SL2.40ch03:45553244..45555756+ go_terms:GO:0030001 functional_description:"Copper-translocating P-type ATPase (AHRD V1 *--- Q3JHP1_BURP1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00000989g0012.1 protein AED:0.25 eAED:0.25 QI:0|1|0|1|0|0|2|0|274 NbS00025619g0001.1 protein AED:0.20 eAED:0.20 QI:355|1|1|1|0.87|0.77|9|355|285; (*SWP) sp|Q8W593|LGUC_ARATH (e_value=0.0) Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=2 SV=1;; (*TAIR) AT1G67280.1 (e_value=0.0) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350;; (*ITAG) Solyc12g007310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1701339-1705392 transcript_region:SL2.40ch12:1701339..1705392- go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase (AHRD V1 **** B6SSK1_MAIZE); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0004462 NbS00007572g0004.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|392; (*SWP) sp|O24575|DCAM_MAIZE (e_value=2e-137) S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1;; (*TAIR) AT3G02470.4 (e_value=1e-121) | Symbols: | S-adenosylmethionine decarboxylase | chr3:510223-511323 FORWARD LENGTH=366;; (*ITAG) Solyc01g010050.2.1 (e_value=4e-117) genomic_reference:SL2.40ch01 gene_region:4683610-4687162 transcript_region:SL2.40ch01:4683610..4687162+ go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00007572g0002.1 protein AED:0.18 eAED:0.18 QI:39|1|1|1|0.75|0.77|9|505|384; (*SWP) sp|O80866|ORP1A_ARATH (e_value=1e-119) Oxysterol-binding protein-related protein 1A OS=Arabidopsis thaliana GN=ORP1A PE=2 SV=1;; (*TAIR) AT2G31020.1 (e_value=9e-121) | Symbols: ORP1A | OSBP(oxysterol binding protein)-related protein 1A | chr2:13201668-13204682 FORWARD LENGTH=760;; (*ITAG) Solyc07g006100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:946720-955495 transcript_region:SL2.40ch07:946720..955495- go_terms:GO:0035091,GO:0008142 functional_description:"Oxysterol-binding protein (AHRD V1 **** A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0035091,GO:0008142 NbS00007572g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|0.5|2|0|109; (*TAIR) AT4G30550.1 (e_value=2e-42) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr4:14925618-14926713 FORWARD LENGTH=249;; (*ITAG) Solyc07g006090.1.1 (e_value=6e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:942872-945412 transcript_region:SL2.40ch07:942872..945412+ go_terms:GO:0003824 functional_description:"GMP synthase (AHRD V1 ***- B9SQW3_RICCO); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0003824 NbS00018215g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.66|1|1|1|9|0|703; (*SWP) sp|Q9SAB1|HSP7Q_ARATH (e_value=0.0) Heat shock 70 kDa protein 16 OS=Arabidopsis thaliana GN=HSP70-16 PE=2 SV=1;; (*TAIR) AT1G11660.1 (e_value=0.0) | Symbols: | heat shock protein 70 (Hsp 70) family protein | chr1:3921056-3924347 FORWARD LENGTH=763;; (*ITAG) Solyc02g080470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39251685-39263151 transcript_region:SL2.40ch02:39251685..39263151+ go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00013024g0003.1 protein AED:0.16 eAED:0.17 QI:4|1|0|1|1|0|2|0|102; (*ITAG) Solyc04g051270.1.1 (e_value=3e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49377497-49378668 transcript_region:SL2.40ch04:49377497..49378668+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_SOYBN)"; NbS00027349g0025.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|323; (*SWP) sp|Q9LSZ0|APO4_ARATH (e_value=2e-128) APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2;; (*TAIR) AT3G21740.1 (e_value=2e-129) | Symbols: APO4 | Arabidopsis thaliana protein of unknown function (DUF794) | chr3:7662542-7663638 REVERSE LENGTH=337;; (*ITAG) Solyc04g080060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61950021-61953775 transcript_region:SL2.40ch04:61950021..61953775+ functional_description:"APO protein 4, mitochondrial (AHRD V1 ***- APO4_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00027349g0005.1 protein AED:0.35 eAED:0.58 QI:38|1|0.5|1|0|0|2|300|113 NbS00027349g0023.1 protein AED:0.04 eAED:0.09 QI:270|0.5|0.33|1|1|1|3|0|441; (*TAIR) AT1G19360.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:6690672-6692211 REVERSE LENGTH=428;; (*ITAG) Solyc04g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61956665-61959216 transcript_region:SL2.40ch04:61956665..61959216- go_terms:GO:0005783 functional_description:"Glycosyltransferase family 77 protein (AHRD V1 ***- C1N277_MICPS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00027349g0020.1 protein AED:0.10 eAED:0.10 QI:122|0.8|0.83|1|1|1|6|0|812; (*SWP) sp|P93422|SYH_ORYSJ (e_value=0.0) Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2;; (*TAIR) AT3G02760.1 (e_value=0.0) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:597588-600650 REVERSE LENGTH=883;; (*ITAG) Solyc01g102800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83261245-83268236 transcript_region:SL2.40ch01:83261245..83268236+ go_terms:GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 functional_description:"Histidyl-tRNA synthetase (AHRD V1 *-*- Q52NV4_HUMAN); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 NbS00027349g0010.1 protein AED:0.10 eAED:0.10 QI:835|0.88|0.9|1|0.77|0.7|10|19|563; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=6e-34) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT1G75100.1 (e_value=5e-65) | Symbols: JAC1 | J-domain protein required for chloroplast accumulation response 1 | chr1:28191108-28193769 REVERSE LENGTH=651;; (*ITAG) Solyc04g080040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61925931-61931565 transcript_region:SL2.40ch04:61925931..61931565- go_terms:GO:0005515 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B6QFU5_PENMQ); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005515 NbS00027349g0028.1 protein AED:0.31 eAED:0.32 QI:79|0.63|0.66|1|0.63|0.66|12|433|420; (*SWP) sp|Q55B06|SPXS1_DICDI (e_value=2e-36) SPX and EXS domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0271664 PE=3 SV=2;; (*TAIR) AT5G35730.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr5:13893941-13896821 FORWARD LENGTH=457;; (*ITAG) Solyc04g080050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61932459-61945517 transcript_region:SL2.40ch04:61932459..61945517- go_terms:GO:0016021 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0016021 NbS00050728g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.25|0.75|0|0.25|4|0|186; (*SWP) sp|Q8GYH6|RTNLP_ARATH (e_value=4e-49) Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1;; (*TAIR) AT3G10915.1 (e_value=2e-51) | Symbols: | Reticulon family protein | chr3:3416573-3417497 REVERSE LENGTH=162;; (*ITAG) Solyc06g049060.2.1 (e_value=3e-56) genomic_reference:SL2.40ch06 gene_region:28826494-28832938 transcript_region:SL2.40ch06:28826494..28832938- go_terms:GO:0005783 functional_description:"Reticulon (AHRD V1 ***- B6TG01_MAIZE); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00050728g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.33|1|1|1|3|393|234; (*SWP) sp|Q0DHB7|EXPA4_ORYSJ (e_value=1e-85) Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1;; (*TAIR) AT1G26770.1 (e_value=8e-84) | Symbols: ATEXPA10, AT-EXP10, ATEXP10, ATHEXP ALPHA 1.1, EXP10, EXPA10 | expansin A10 | chr1:9259805-9260792 FORWARD LENGTH=249;; (*ITAG) Solyc06g049050.2.1 (e_value=9e-96) genomic_reference:SL2.40ch06 gene_region:28822198-28823964 transcript_region:SL2.40ch06:28822198..28823964+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- O82625_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00061523g0002.1 protein AED:0.08 eAED:0.08 QI:114|0|1|1|0|1|2|159|94; (*ITAG) Solyc06g068170.1.1 (e_value=9e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:38632567-38635545 transcript_region:SL2.40ch06:38632567..38635545- functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- C1C3V0_RANCA)"; NbS00054003g0001.1 protein AED:0.02 eAED:0.06 QI:80|1|0.5|1|0|0|2|0|722; (*SWP) sp|Q9FLD8|PP408_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1;; (*TAIR) AT5G39980.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16001036-16003072 REVERSE LENGTH=678;; (*ITAG) Solyc02g087560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44542817-44544814 transcript_region:SL2.40ch02:44542817..44544814+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJE2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00054003g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|0|0.5|2|0|117; (*SWP) sp|Q9STS6|LBD27_ARATH (e_value=1e-31) LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1;; (*TAIR) AT3G47870.1 (e_value=1e-32) | Symbols: SCP, LBD27 | LOB domain-containing protein 27 | chr3:17660021-17661007 REVERSE LENGTH=328;; (*ITAG) Solyc02g087570.1.1 (e_value=6e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44545431-44545802 transcript_region:SL2.40ch02:44545431..44545802- go_terms:GO:0005515 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00030615g0019.1 protein AED:0.07 eAED:0.07 QI:298|1|1|1|1|1|7|250|727; (*SWP) sp|Q54NM9|STT3_DICDI (e_value=0.0) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 OS=Dictyostelium discoideum GN=stt3 PE=3 SV=1;; (*TAIR) AT1G34130.1 (e_value=0.0) | Symbols: STT3B | staurosporin and temperature sensitive 3-like b | chr1:12430000-12432985 FORWARD LENGTH=735;; (*ITAG) Solyc03g098600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54347680-54353815 transcript_region:SL2.40ch03:54347680..54353815- go_terms:GO:0016020 functional_description:"Oligosaccharyl transferase STT3 subunit (AHRD V1 ***- B6T514_MAIZE); contains Interpro domain(s) IPR003674 Oligosaccharyl transferase, STT3 subunit "; GO:0016020 NbS00030615g0020.1 protein AED:0.05 eAED:0.11 QI:91|0.66|0.57|1|0.5|0.42|7|0|255; (*SWP) sp|Q0WQQ1|AGD15_ARATH (e_value=1e-64) Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1;; (*TAIR) AT3G17660.1 (e_value=1e-65) | Symbols: AGD15 | ARF-GAP domain 15 | chr3:6037717-6039092 FORWARD LENGTH=232;; (*ITAG) Solyc03g098500.2.1 (e_value=8e-121) genomic_reference:SL2.40ch03 gene_region:54231302-54233918 transcript_region:SL2.40ch03:54231302..54233918- go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00030615g0007.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|137 NbS00030615g0022.1 protein AED:0.00 eAED:0.00 QI:74|1|1|1|1|1|2|962|286; (*ITAG) Solyc03g098530.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:54265283-54266270 transcript_region:SL2.40ch03:54265283..54266270+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030615g0002.1 protein AED:0.16 eAED:0.27 QI:0|1|0.5|1|0|0|2|389|398; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=4e-61) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=3e-62) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc03g098590.2.1 (e_value=4e-105) genomic_reference:SL2.40ch03 gene_region:54343599-54347276 transcript_region:SL2.40ch03:54343599..54347276+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030615g0025.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|921; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=2e-105) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=2e-106) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc03g098580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54338126-54340698 transcript_region:SL2.40ch03:54338126..54340698+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010035g0002.1 protein AED:0.02 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|441|346; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=2e-163) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=2e-164) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc02g089880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46149036-46150509 transcript_region:SL2.40ch02:46149036..46150509+ go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00010035g0006.1 protein AED:0.75 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|67 NbS00010035g0007.1 protein AED:0.18 eAED:0.24 QI:15|0|0|1|0|0|2|0|244; (*SWP) sp|Q99942|RNF5_HUMAN (e_value=3e-26) E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1;; (*TAIR) AT2G23780.1 (e_value=9e-65) | Symbols: | RING/U-box superfamily protein | chr2:10123551-10124234 REVERSE LENGTH=227;; (*ITAG) Solyc02g089870.1.1 (e_value=3e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:46144086-46144748 transcript_region:SL2.40ch02:46144086..46144748+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 **-- B6TLS1_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024074g0004.1 protein AED:0.18 eAED:0.18 QI:330|1|0.87|1|0.85|0.87|8|0|821; (*SWP) sp|Q8VZI8|FTSHA_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1;; (*TAIR) AT1G07510.1 (e_value=0.0) | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-2309380 FORWARD LENGTH=813;; (*ITAG) Solyc09g010950.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4306434-4314668 transcript_region:SL2.40ch09:4306434..4314668- go_terms:GO:0051082,GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_BACSU); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0051082,GO:0004176 NbS00024074g0002.1 protein AED:0.00 eAED:0.00 QI:186|-1|0|1|-1|1|1|0|70 NbS00039420g0006.1 protein AED:0.13 eAED:0.15 QI:0|0.8|0.5|1|1|1|6|0|306; (*TAIR) AT4G16830.2 (e_value=8e-25) | Symbols: | Hyaluronan / mRNA binding family | chr4:9470979-9472308 FORWARD LENGTH=265;; (*ITAG) Solyc08g007220.2.1 (e_value=5e-71) genomic_reference:SL2.40ch08 gene_region:1786907-1790103 transcript_region:SL2.40ch08:1786907..1790103- go_terms:GO:0003723 functional_description:"Nuclear RNA binding protein (Fragment) (AHRD V1 **** Q9SQ56_TOBAC); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; GO:0003723 NbS00017357g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|166; (*SWP) sp|O50003|RL12_PRUAR (e_value=6e-108) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=1e-105) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=4e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00021748g0005.1 protein AED:0.12 eAED:0.12 QI:915|0.6|0.5|1|0.6|0.66|6|265|100; (*SWP) sp|Q9LVU1|VAP21_ARATH (e_value=9e-25) Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1;; (*TAIR) AT5G47180.2 (e_value=7e-26) | Symbols: | Plant VAMP (vesicle-associated membrane protein) family protein | chr5:19161384-19163265 REVERSE LENGTH=220;; (*ITAG) Solyc08g007200.2.1 (e_value=5e-46) genomic_reference:SL2.40ch08 gene_region:1768260-1774340 transcript_region:SL2.40ch08:1768260..1774340- go_terms:GO:0046982 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MPW2_ARALY); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0046982 NbS00021748g0008.1 protein AED:0.01 eAED:0.04 QI:17|0|0|1|0|0|2|0|584; (*SWP) sp|Q9T048|DRL27_ARATH (e_value=1e-103) Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1;; (*TAIR) AT4G27190.1 (e_value=9e-105) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13620977-13623934 REVERSE LENGTH=985;; (*ITAG) Solyc08g013970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3370576-3373318 transcript_region:SL2.40ch08:3370576..3373318+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00032205g0008.1 protein AED:0.25 eAED:0.25 QI:180|1|1|1|0.6|0.66|6|259|341; (*TAIR) AT3G58830.1 (e_value=2e-112) | Symbols: | haloacid dehalogenase (HAD) superfamily protein | chr3:21755172-21756637 REVERSE LENGTH=343;; (*ITAG) Solyc07g055980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61203405-61207625 transcript_region:SL2.40ch07:61203405..61207625- go_terms:GO:0003824 functional_description:"HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 (AHRD V1 *-*- B1I3D3_DESAP); contains Interpro domain(s) IPR010021 HAD-superfamily phosphatase, subfamily IIIA "; GO:0003824 NbS00032205g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|482; (*SWP) sp|Q6WG30|T5H_TAXCU (e_value=2e-102) Taxadiene 5-alpha hydroxylase OS=Taxus cuspidata PE=1 SV=2;; (*TAIR) AT2G42850.1 (e_value=0.0) | Symbols: CYP718 | cytochrome P450, family 718 | chr2:17831662-17833309 FORWARD LENGTH=485;; (*ITAG) Solyc07g055970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61200877-61202548 transcript_region:SL2.40ch07:61200877..61202548+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00047459g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.36|1|0.7|0.72|11|360|2209; (*TAIR) AT2G22125.1 (e_value=0.0) | Symbols: CSI1 | binding | chr2:9406793-9414223 FORWARD LENGTH=2150;; (*ITAG) Solyc04g054480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51734576-51744000 transcript_region:SL2.40ch04:51734576..51744000+ go_terms:GO:0005488 functional_description:"C2 domain-containing protein-like (AHRD V1 *-*- Q67UI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00024429g0019.1 protein AED:0.05 eAED:0.08 QI:0|1|0.5|1|0|0|2|0|329; (*SWP) sp|Q55DP8|ACY1_DICDI (e_value=6e-64) Aminoacylase-1 OS=Dictyostelium discoideum GN=acy1 PE=2 SV=1;; (*TAIR) AT1G44820.1 (e_value=5e-157) | Symbols: | Peptidase M20/M25/M40 family protein | chr1:16926351-16928354 FORWARD LENGTH=438;; (*ITAG) Solyc11g012970.1.1 (e_value=8e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5799780-5805190 transcript_region:SL2.40ch11:5799780..5805190+ go_terms:GO:0008152,GO:0005737 functional_description:"Aminoacylase-1 (AHRD V1 ***- B6TNG9_MAIZE); contains Interpro domain(s) IPR010159 N-acyl-L-amino-acid amidohydrolase "; GO:0008152,GO:0005737 NbS00024429g0004.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|239; (*SWP) sp|Q9SFE4|ERF12_ARATH (e_value=5e-30) Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1;; (*TAIR) AT1G21910.1 (e_value=4e-31) | Symbols: DREB26 | Integrase-type DNA-binding superfamily protein | chr1:7696655-7697347 FORWARD LENGTH=230;; (*ITAG) Solyc11g012980.1.1 (e_value=3e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5825005-5825664 transcript_region:SL2.40ch11:5825005..5825664+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 9 (AHRD V1 *-*- ERF80_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00024429g0016.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|63 NbS00051296g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|0.5|2|91|69; (*ITAG) Solyc08g082160.2.1 (e_value=5e-39) genomic_reference:SL2.40ch08 gene_region:62189308-62190294 transcript_region:SL2.40ch08:62189308..62190294- functional_description:"Unknown Protein (AHRD V1)"; NbS00036048g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|497; (*TAIR) AT1G27100.1 (e_value=1e-148) | Symbols: | Actin cross-linking protein | chr1:9407557-9411074 REVERSE LENGTH=519;; (*ITAG) Solyc05g006790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1411394-1414339 transcript_region:SL2.40ch05:1411394..1414339+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 *--- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00036048g0012.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.25|1|0.33|0.25|4|0|457; (*TAIR) AT1G27100.1 (e_value=1e-143) | Symbols: | Actin cross-linking protein | chr1:9407557-9411074 REVERSE LENGTH=519;; (*ITAG) Solyc05g006780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1400482-1407165 transcript_region:SL2.40ch05:1400482..1407165+ functional_description:"NPH3 domain containing protein-like (AHRD V1 *-*- Q8GVF8_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00036048g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|487; (*SWP) sp|Q0WQW5|PPR85_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2;; (*TAIR) AT1G59720.1 (e_value=0.0) | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21939868-21941784 REVERSE LENGTH=638;; (*ITAG) Solyc05g006800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1416310-1418118 transcript_region:SL2.40ch05:1416310..1418118- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00000740g0121.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.66|1|0.6|0.83|6|67|241 NbS00000740g0117.1 protein AED:0.30 eAED:0.30 QI:230|1|1|1|1|1|7|501|246 NbS00000740g0119.1 protein AED:0.02 eAED:0.02 QI:27|1|1|1|1|1|2|96|439 NbS00000055g0014.1 protein AED:0.17 eAED:0.22 QI:0|0|0|1|0.4|0.16|6|0|485; (*TAIR) AT4G13370.1 (e_value=1e-72) | Symbols: | Plant protein of unknown function (DUF936) | chr4:7777916-7780334 REVERSE LENGTH=673;; (*ITAG) Solyc12g007020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1459084-1462279 transcript_region:SL2.40ch12:1459084..1462279+ functional_description:"cDNA clone J033084B06 full insert sequence (AHRD V1 *-*- B7ESP0_ORYSJ); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00000055g0006.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc12g007020.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1459084-1462279 transcript_region:SL2.40ch12:1459084..1462279+ functional_description:"cDNA clone J033084B06 full insert sequence (AHRD V1 *-*- B7ESP0_ORYSJ); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00000055g0003.1 protein AED:0.19 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|643; (*TAIR) AT1G42550.1 (e_value=0.0) | Symbols: PMI1 | plastid movement impaired1 | chr1:15977131-15979734 FORWARD LENGTH=843;; (*ITAG) Solyc10g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:965024-971538 transcript_region:SL2.40ch10:965024..971538+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000055g0016.1 protein AED:0.31 eAED:0.31 QI:271|0.5|0.33|1|0.5|0.66|3|0|153; (*TAIR) AT3G54040.1 (e_value=1e-35) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g086710.1.1 (e_value=6e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64793100-64793774 transcript_region:SL2.40ch10:64793100..64793774- functional_description:"PAR-1b protein (AHRD V1 ***- Q43588_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00000055g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|265; (*TAIR) AT1G42550.1 (e_value=2e-62) | Symbols: PMI1 | plastid movement impaired1 | chr1:15977131-15979734 FORWARD LENGTH=843;; (*ITAG) Solyc10g006330.2.1 (e_value=6e-147) genomic_reference:SL2.40ch10 gene_region:965024-971538 transcript_region:SL2.40ch10:965024..971538+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028553g0009.1 protein AED:0.06 eAED:0.06 QI:639|1|1|1|0.85|1|8|469|519; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-85) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G15740.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508;; (*ITAG) Solyc03g114730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58687413-58692533 transcript_region:SL2.40ch03:58687413..58692533- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00028553g0008.1 protein AED:0.19 eAED:0.19 QI:293|0.9|0.72|1|1|1|11|16|546; (*SWP) sp|Q9LEZ3|BIM1_ARATH (e_value=7e-97) Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2;; (*TAIR) AT5G08130.4 (e_value=6e-98) | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2609571 REVERSE LENGTH=529;; (*ITAG) Solyc03g114720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58678064-58684162 transcript_region:SL2.40ch03:58678064..58684162+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor BIM2 (AHRD V1 *-** B6SVP6_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00024874g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|310; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=2e-13) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G62380.1 (e_value=9e-15) | Symbols: VND6, ANAC101, NAC101 | NAC-domain protein 101 | chr5:25050684-25051858 FORWARD LENGTH=348;; (*ITAG) Solyc03g062670.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:29295085-29295933 transcript_region:SL2.40ch03:29295085..29295933+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9IDF8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00016969g0001.1 protein AED:0.24 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|251; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=4e-67) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=3e-68) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc05g005790.2.1 (e_value=4e-128) genomic_reference:SL2.40ch05 gene_region:611266-613735 transcript_region:SL2.40ch05:611266..613735- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016969g0017.1 protein AED:0.38 eAED:0.38 QI:98|1|0.83|1|1|1|6|0|400; (*TAIR) AT1G23890.2 (e_value=4e-78) | Symbols: | NHL domain-containing protein | chr1:8438900-8440803 REVERSE LENGTH=400;; (*ITAG) Solyc05g005770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:586976-590980 transcript_region:SL2.40ch05:586976..590980- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KNK1_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00016969g0003.1 protein AED:0.30 eAED:0.69 QI:0|0|0|1|1|1|2|0|96 NbS00016969g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|236; (*SWP) sp|Q8Z7N9|WRBA_SALTI (e_value=5e-39) Flavoprotein WrbA OS=Salmonella typhi GN=wrbA PE=3 SV=3;; (*TAIR) AT4G27270.1 (e_value=3e-98) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=1e-104) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00016969g0024.1 protein AED:0.11 eAED:0.11 QI:131|0.9|0.81|0.90|1|1|11|0|418; (*SWP) sp|O04630|SYTM_ARATH (e_value=0.0) Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3;; (*TAIR) AT5G26830.1 (e_value=0.0) | Symbols: | Threonyl-tRNA synthetase | chr5:9437351-9441568 FORWARD LENGTH=709;; (*ITAG) Solyc05g005800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:614255-624929 transcript_region:SL2.40ch05:614255..624929+ go_terms:GO:0042803 functional_description:"Threonyl-tRNA synthetase (AHRD V1 ***- Q17LW8_AEDAE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0042803 NbS00016969g0019.1 protein AED:0.18 eAED:0.18 QI:0|0.73|0.75|0.85|0.94|0.9|20|502|878; (*SWP) sp|Q9ZUI6|AP1G2_ARATH (e_value=0.0) AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2;; (*TAIR) AT1G60070.1 (e_value=0.0) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc05g005780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:593461-608931 transcript_region:SL2.40ch05:593461..608931+ go_terms:GO:0042802,GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0042802,GO:0030276 NbS00016969g0021.1 protein AED:0.20 eAED:0.21 QI:0|0.83|0.57|0.85|0.83|1|7|0|483; (*TAIR) AT1G23880.1 (e_value=0.0) | Symbols: | NHL domain-containing protein | chr1:8436125-8438636 FORWARD LENGTH=545;; (*ITAG) Solyc05g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:582377-585803 transcript_region:SL2.40ch05:582377..585803+ functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7KY00_ARALY); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00023375g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|0|1|2|0|324; (*SWP) sp|Q9FZ96|PUP1_ARATH (e_value=4e-92) Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1;; (*TAIR) AT1G28230.1 (e_value=3e-93) | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862200-9864554 REVERSE LENGTH=356;; (*ITAG) Solyc12g087870.1.1 (e_value=2e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00059716g0003.1 protein AED:0.21 eAED:0.21 QI:230|1|1|1|0|0.5|4|2075|109 NbS00050749g0004.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|88 NbS00050749g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|497; (*TAIR) AT5G01710.1 (e_value=2e-173) | Symbols: | methyltransferases | chr5:263709-265250 REVERSE LENGTH=513;; (*ITAG) Solyc06g007380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1412600-1414042 transcript_region:SL2.40ch06:1412600..1414042- functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00050749g0007.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0|1|0.5|0.66|3|0|762; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=9e-171) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=7e-172) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=6e-174) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00014698g0003.1 protein AED:0.06 eAED:0.06 QI:6|1|1|1|0|0.33|3|87|285; (*SWP) sp|P50699|TLPH_ARATH (e_value=2e-77) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT1G77700.1 (e_value=2e-131) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:29204747-29206217 FORWARD LENGTH=356;; (*ITAG) Solyc11g013300.1.1 (e_value=1e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6250399-6253767 transcript_region:SL2.40ch11:6250399..6253767- functional_description:"Thaumatin-like protein 12104-13574 (AHRD V1 **-- Q9CA24_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00013980g0010.1 protein AED:0.17 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|198; (*ITAG) Solyc02g050130.1.1 (e_value=4e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:24452287-24452865 transcript_region:SL2.40ch02:24452287..24452865+ functional_description:"Polyprotein (AHRD V1 **-- Q9SXQ4_ARATH)"; NbS00013980g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.2|1|0.75|0.8|5|0|587; (*SWP) sp|P09960|LKHA4_HUMAN (e_value=3e-112) Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2;; (*TAIR) AT5G13520.1 (e_value=0.0) | Symbols: | peptidase M1 family protein | chr5:4342117-4344571 REVERSE LENGTH=616;; (*ITAG) Solyc04g049720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:42386347-42391422 transcript_region:SL2.40ch04:42386347..42391422+ go_terms:GO:0004222,GO:0070006 functional_description:"Leukotriene-A4 hydrolase-like protein (AHRD V1 ***- Q9FY49_ARATH); contains Interpro domain(s) IPR001930 Peptidase M1, membrane alanine aminopeptidase "; GO:0004222,GO:0070006 NbS00013980g0015.1 protein AED:0.35 eAED:0.35 QI:0|0.88|0.9|0.9|0.88|1|10|252|306; (*SWP) sp|P36151|YK50_YEAST (e_value=3e-32) Uncharacterized protein YKR070W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKR070W PE=1 SV=1;; (*TAIR) AT3G45740.1 (e_value=3e-135) | Symbols: | hydrolase family protein / HAD-superfamily protein | chr3:16790830-16793280 FORWARD LENGTH=376;; (*ITAG) Solyc06g075540.2.1 (e_value=5e-134) genomic_reference:SL2.40ch06 gene_region:43294894-43300401 transcript_region:SL2.40ch06:43294894..43300401+ go_terms:GO:0008808 functional_description:"Phosphatidyl synthase (AHRD V1 **-* B2WIU8_PYRTR); contains Interpro domain(s) IPR006353 HAD-superfamily hydrolase, subfamily IIA, CECR5 "; GO:0008808 NbS00013980g0009.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|83 NbS00037225g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.8|1|1|1|5|393|320; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-83) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=5e-78) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc04g009770.2.1 (e_value=2e-92) genomic_reference:SL2.40ch04 gene_region:3081668-3086277 transcript_region:SL2.40ch04:3081668..3086277+ go_terms:GO:0051082 functional_description:"DNAJ chaperone (AHRD V1 ***- Q1HR50_AEDAE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00025277g0007.1 protein AED:0.36 eAED:0.39 QI:0|0.5|0.4|1|0.25|0.2|5|559|152; (*TAIR) AT5G57230.1 (e_value=3e-64) | Symbols: | Thioredoxin superfamily protein | chr5:23190572-23191485 FORWARD LENGTH=160;; (*ITAG) Solyc07g008910.2.1 (e_value=3e-70) genomic_reference:SL2.40ch07 gene_region:3899866-3904841 transcript_region:SL2.40ch07:3899866..3904841+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00053943g0006.1 protein AED:0.60 eAED:0.61 QI:40|0|0|0.5|1|0.5|2|0|60 NbS00053943g0001.1 protein AED:0.91 eAED:0.91 QI:0|-1|0|1|-1|1|1|0|111 NbS00053943g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|87 NbS00016523g0001.1 protein AED:0.06 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|244; (*SWP) sp|Q9LUJ5|EBP2_ARATH (e_value=3e-69) Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1;; (*TAIR) AT3G22660.1 (e_value=2e-70) | Symbols: | rRNA processing protein-related | chr3:8016237-8017118 REVERSE LENGTH=293;; (*ITAG) Solyc01g006170.2.1 (e_value=8e-84) genomic_reference:SL2.40ch01 gene_region:809135-810275 transcript_region:SL2.40ch01:809135..810275- go_terms:GO:0005515 functional_description:"rRNA processing protein ebna1-binding protein-related (AHRD V1 *--* C4QG91_SCHMA); contains Interpro domain(s) IPR008610 Eukaryotic rRNA processing "; GO:0005515 NbS00016523g0005.1 protein AED:0.12 eAED:0.12 QI:154|0.9|0.95|0.95|0.9|0.95|21|287|879; (*SWP) sp|Q8LPU5|CMT3_MAIZE (e_value=0.0) DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2 SV=1;; (*TAIR) AT1G69770.1 (e_value=0.0) | Symbols: CMT3 | chromomethylase 3 | chr1:26248496-26253519 REVERSE LENGTH=839;; (*ITAG) Solyc12g100330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65430879-65437290 transcript_region:SL2.40ch12:65430879..65437290+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** B9GLJ3_POPTR); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00019874g0005.1 protein AED:0.15 eAED:0.17 QI:15|0.66|0.57|1|0.83|1|7|0|473; (*SWP) sp|Q9LXJ0|FTZ22_ARATH (e_value=0.0) Cell division protein FtsZ homolog 2-2, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-2 PE=1 SV=1;; (*TAIR) AT3G52750.1 (e_value=0.0) | Symbols: FTSZ2-2 | Tubulin/FtsZ family protein | chr3:19549841-19552435 REVERSE LENGTH=473;; (*ITAG) Solyc09g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2862256-2879815 transcript_region:SL2.40ch09:2862256..2879815- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B0BYG5_ACAM1); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00019874g0007.1 protein AED:0.29 eAED:0.68 QI:0|0|0|1|1|1|2|0|81 NbS00003912g0020.1 protein AED:0.12 eAED:0.18 QI:0|0|0|0.75|0.66|0.5|4|0|248; (*SWP) sp|Q08069|RS8_MAIZE (e_value=9e-72) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=4e-70) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=6e-72) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00003912g0018.1 protein AED:0.44 eAED:0.57 QI:147|0.5|0.66|1|0|0.33|3|0|56 NbS00003912g0019.1 protein AED:0.44 eAED:0.83 QI:73|0|0.5|1|0|0.5|2|0|22 NbS00003912g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|78; (*SWP) sp|Q9LYC6|GRC11_ARATH (e_value=2e-32) Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1;; (*TAIR) AT3G62950.1 (e_value=2e-33) | Symbols: | Thioredoxin superfamily protein | chr3:23266303-23266614 FORWARD LENGTH=103;; (*ITAG) Solyc09g074580.1.1 (e_value=3e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61920745-61921053 transcript_region:SL2.40ch09:61920745..61921053- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9W1_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00003912g0007.1 protein AED:0.33 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|134; (*ITAG) Solyc08g016290.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00003912g0022.1 protein AED:0.31 eAED:0.47 QI:0|0|0|1|0|0|2|0|123 NbS00028953g0001.1 protein AED:0.08 eAED:0.08 QI:14|0|0|1|0|0|3|0|99; (*ITAG) Solyc06g043280.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:26933813-26933968 transcript_region:SL2.40ch06:26933813..26933968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057856g0001.1 protein AED:0.11 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|411; (*SWP) sp|Q9S7H5|SCL21_ARATH (e_value=2e-49) Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1;; (*TAIR) AT2G04890.1 (e_value=2e-50) | Symbols: SCL21 | SCARECROW-like 21 | chr2:1720575-1721816 REVERSE LENGTH=413;; (*ITAG) Solyc11g017100.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7898735-7900165 transcript_region:SL2.40ch11:7898735..7900165- functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00000939g0004.1 protein AED:0.19 eAED:0.19 QI:453|0|0.66|0.66|1|1|3|1656|283; (*SWP) sp|Q9FM86|ADT5_ARATH (e_value=8e-40) Probable ADP,ATP carrier protein At5g56450 OS=Arabidopsis thaliana GN=At5g56450 PE=2 SV=1;; (*TAIR) AT5G56450.1 (e_value=6e-41) | Symbols: | Mitochondrial substrate carrier family protein | chr5:22858772-22859764 REVERSE LENGTH=330;; (*ITAG) Solyc08g063030.2.1 (e_value=2e-63) genomic_reference:SL2.40ch08 gene_region:49720348-49723736 transcript_region:SL2.40ch08:49720348..49723736- go_terms:GO:0016020,GO:0005743 functional_description:"ADP,ATP carrier protein 1, mitochondrial (AHRD V1 *-*- ADT1_MAIZE); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00000939g0014.1 protein AED:0.03 eAED:0.03 QI:133|1|1|1|0.8|0.66|6|112|446; (*SWP) sp|P54772|DCHS_SOLLC (e_value=0.0) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=2e-179) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g066240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51931722-51934106 transcript_region:SL2.40ch08:51931722..51934106+ go_terms:GO:0019752,GO:0030170 functional_description:"Decarboxylase family protein (AHRD V1 ***- A7GHE9_CLOBL); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0019752,GO:0030170 NbS00000939g0016.1 protein AED:0.18 eAED:0.18 QI:160|1|1|1|0.9|0.90|11|227|365; (*SWP) sp|O59797|YCO6_SCHPO (e_value=5e-44) Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1;; (*TAIR) AT2G19480.3 (e_value=7e-128) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc08g063000.2.1 (e_value=3e-165) genomic_reference:SL2.40ch08 gene_region:49708954-49712049 transcript_region:SL2.40ch08:49708954..49712049+ go_terms:GO:0003677,GO:0042393 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0003677,GO:0042393 NbS00022722g0008.1 protein AED:0.06 eAED:0.07 QI:206|0.75|0.4|1|0.5|0.2|5|0|1087; (*SWP) sp|O67588|CLPB_AQUAE (e_value=2e-12) Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB PE=3 SV=1;; (*TAIR) AT5G57710.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr5:23384794-23388052 FORWARD LENGTH=990;; (*ITAG) Solyc07g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1345087-1349250 transcript_region:SL2.40ch07:1345087..1349250- functional_description:"Chaperone protein ClpB (AHRD V1 *--- C7HTI8_9FIRM)"; NbS00058317g0004.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|0|446; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=2e-38) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT5G52430.1 (e_value=1e-83) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:21283093-21285045 REVERSE LENGTH=438;; (*ITAG) Solyc08g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61459572-61463990 transcript_region:SL2.40ch08:61459572..61463990- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7MRR7_ARALY)"; NbS00005481g0001.1 protein AED:0.09 eAED:0.09 QI:202|1|0.83|1|1|1|6|0|331; (*SWP) sp|Q5XF57|Y5576_ARATH (e_value=5e-120) Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1;; (*TAIR) AT2G18890.1 (e_value=4e-165) | Symbols: | Protein kinase superfamily protein | chr2:8184027-8186685 FORWARD LENGTH=392;; (*ITAG) Solyc07g018140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9291230-9296325 transcript_region:SL2.40ch07:9291230..9296325- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00045253g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.69|1|1|1|13|318|630; (*SWP) sp|Q3T0K2|TCPG_BOVIN (e_value=0.0) T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1;; (*TAIR) AT5G26360.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00004283g0009.1 protein AED:0.01 eAED:0.01 QI:29|1|0.75|1|0.66|0.5|4|567|130; (*TAIR) AT5G17610.1 (e_value=4e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5804011-5805045 FORWARD LENGTH=121;; (*ITAG) Solyc01g081200.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:72996226-73000334 transcript_region:SL2.40ch01:72996226..73000334- functional_description:"Unknown Protein (AHRD V1)"; NbS00043173g0003.1 protein AED:0.16 eAED:0.16 QI:136|1|1|1|0.75|0.6|5|381|143; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=2e-72) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=2e-73) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=7e-84) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00016788g0001.1 protein AED:0.09 eAED:0.09 QI:114|1|1|1|0.5|0.4|5|81|218; (*SWP) sp|P0A9P9|IDNO_ECOLI (e_value=3e-23) Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1;; (*TAIR) AT3G55290.1 (e_value=5e-85) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:20502653-20503730 FORWARD LENGTH=280;; (*ITAG) Solyc10g078360.1.1 (e_value=9e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59509321-59510895 transcript_region:SL2.40ch10:59509321..59510895- go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00017028g0003.1 protein AED:0.03 eAED:0.03 QI:177|1|1|1|1|1|2|254|353; (*SWP) sp|O80928|DOF24_ARATH (e_value=5e-45) Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana GN=DOF2.4 PE=2 SV=1;; (*TAIR) AT2G37590.1 (e_value=4e-46) | Symbols: ATDOF2.4, DOF2.4 | DNA binding with one finger 2.4 | chr2:15769292-15770497 FORWARD LENGTH=330;; (*ITAG) Solyc09g010680.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:3999004-4000745 transcript_region:SL2.40ch09:3999004..4000745+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00059519g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|111|420; (*SWP) sp|P08894|CHSA_PETHY (e_value=0.0) Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1;; (*TAIR) AT5G13930.1 (e_value=0.0) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc09g091510.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66123066-66125217 transcript_region:SL2.40ch09:66123066..66125217+ go_terms:GO:0008152,GO:0008415,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- Q56I79_9SOLN); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008152,GO:0008415,GO:0009058 NbS00059519g0009.1 protein AED:0.05 eAED:0.05 QI:169|0|0.5|1|0|0|2|70|317; (*SWP) sp|P08894|CHSA_PETHY (e_value=0.0) Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1;; (*TAIR) AT5G13930.1 (e_value=0.0) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc05g053550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62779402-62781543 transcript_region:SL2.40ch05:62779402..62781543+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- C5IWS6_NICAL); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008415,GO:0008152,GO:0009058 NbS00059519g0005.1 protein AED:0.28 eAED:0.30 QI:0|0.2|0.16|0.83|1|1|6|0|240; (*SWP) sp|P41095|RLA0_ORYSJ (e_value=1e-65) 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3;; (*TAIR) AT3G09200.1 (e_value=3e-65) | Symbols: | Ribosomal protein L10 family protein | chr3:2823364-2825020 REVERSE LENGTH=320;; (*ITAG) Solyc09g091520.1.1 (e_value=2e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66128811-66131811 transcript_region:SL2.40ch09:66128811..66131811+ go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7LEE5_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00029487g0009.1 protein AED:0.28 eAED:0.35 QI:0|0|0.5|1|0|0|2|0|228; (*SWP) sp|Q9ZZT8|CYB_PEA (e_value=2e-113) Cytochrome b OS=Pisum sativum GN=MT-CYB PE=3 SV=1;; (*ITAG) ATMG00220.1 (e_value=1e-112) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=1e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00029487g0014.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0.5|2|0|94; (*SWP) sp|P51409|RM05_SOLTU (e_value=1e-44) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=5e-39) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=2e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00029487g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|170; (*SWP) sp|P46300|RS4_SOLTU (e_value=7e-65) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=2e-64) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc04g016350.1.1 (e_value=5e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:7142894-7143686 transcript_region:SL2.40ch04:7142894..7143686- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00029487g0010.1 protein AED:0.30 eAED:0.41 QI:0|0|0|1|0|0|2|0|210; (*SWP) sp|P09843|CYB_OENBE (e_value=1e-116) Cytochrome b OS=Oenothera berteriana GN=MT-CYB PE=2 SV=4;; (*ITAG) ATMG00220.1 (e_value=3e-122) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=9e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00029487g0013.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|180; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-44) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=3e-44) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc07g040970.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00029487g0012.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|3|0|146; (*SWP) sp|Q01300|NU1M_PETHY (e_value=1e-43) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*ITAG) ATMG01275.1 (e_value=5e-39) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325; NbS00029487g0011.1 protein AED:0.06 eAED:0.41 QI:0|0|0|1|0|0|2|0|129; (*SWP) sp|Q2L907|PSAA_GOSHI (e_value=8e-51) Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium hirsutum GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=3e-51) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc12g032980.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22322054-22322554 transcript_region:SL2.40ch12:22322054..22322554+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A2 (AHRD V1 ***- B2LMJ2_GUIAB); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00000890g0012.1 protein AED:0.23 eAED:0.25 QI:1208|0.85|0.87|1|0.85|0.87|8|0|314; (*SWP) sp|O26680|DHQS_METTH (e_value=1e-75) 3-dehydroquinate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_580 PE=3 SV=2;; (*TAIR) AT3G28760.1 (e_value=3e-133) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). | chr3:10793126-10795304 REVERSE LENGTH=422;; (*ITAG) Solyc03g058860.2.1 (e_value=6e-169) genomic_reference:SL2.40ch03 gene_region:23704625-23713141 transcript_region:SL2.40ch03:23704625..23713141- functional_description:"3-dehydroquinate synthase (AHRD V1 ***- B4FYZ3_MAIZE); contains Interpro domain(s) IPR002812 3-dehydroquinate synthase, prokaryotic-type "; NbS00000890g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|395; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=4e-88) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT3G28850.1 (e_value=3e-89) | Symbols: | Glutaredoxin family protein | chr3:10848669-10849955 FORWARD LENGTH=428;; (*ITAG) Solyc02g087850.1.1 (e_value=8e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44693201-44694460 transcript_region:SL2.40ch02:44693201..44694460+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LM49_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00000890g0014.1 protein AED:0.37 eAED:0.38 QI:593|0.83|0.71|1|0.5|0.42|7|0|264; (*SWP) sp|Q8L4D8|IQD31_ARATH (e_value=6e-26) Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1;; (*TAIR) AT1G74690.1 (e_value=5e-27) | Symbols: IQD31 | IQ-domain 31 | chr1:28061498-28063924 REVERSE LENGTH=587;; (*ITAG) Solyc02g087760.2.1 (e_value=1e-85) genomic_reference:SL2.40ch02 gene_region:44643248-44648496 transcript_region:SL2.40ch02:44643248..44648496+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6U6R2_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00004376g0006.1 protein AED:0.44 eAED:0.44 QI:0|0.75|0.6|0.8|0.25|0.6|5|0|153; (*SWP) sp|Q55DQ5|MED7_DICDI (e_value=4e-33) Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1;; (*TAIR) AT5G03500.3 (e_value=1e-81) | Symbols: | Mediator complex, subunit Med7 | chr5:876673-877660 REVERSE LENGTH=168;; (*ITAG) Solyc04g081430.2.1 (e_value=5e-88) genomic_reference:SL2.40ch04 gene_region:63005415-63007770 transcript_region:SL2.40ch04:63005415..63007770+ go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 7 (AHRD V1 **** C1C4Y2_RANCA); contains Interpro domain(s) IPR009244 Mediator complex, subunit Med7 "; GO:0003713 NbS00023138g0007.1 protein AED:0.23 eAED:0.23 QI:0|0.9|0.81|1|0.8|0.72|11|295|576; (*TAIR) AT3G19490.1 (e_value=0.0) | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter 1 | chr3:6754875-6758127 REVERSE LENGTH=576;; (*ITAG) Solyc11g044540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35907027-35917923 transcript_region:SL2.40ch11:35907027..35917923- go_terms:GO:0016021 functional_description:"Na+/H+ antiporter NhaD (AHRD V1 ***- A4VP01_PSEU5); contains Interpro domain(s) IPR018390 Na+/H+ antiporter NhaD-like "; GO:0016021 NbS00028826g0013.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.66|1|1|3|0|236; (*TAIR) AT1G61667.1 (e_value=1e-56) | Symbols: | Protein of unknown function, DUF538 | chr1:22767674-22768269 FORWARD LENGTH=156;; (*ITAG) Solyc02g079790.2.1 (e_value=7e-88) genomic_reference:SL2.40ch02 gene_region:38814499-38815447 transcript_region:SL2.40ch02:38814499..38815447+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00028826g0012.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.8|1|1|1|5|353|239; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-88) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT1G11430.1 (e_value=6e-88) | Symbols: | plastid developmental protein DAG, putative | chr1:3847273-3848938 FORWARD LENGTH=232;; (*ITAG) Solyc02g079770.2.1 (e_value=8e-108) genomic_reference:SL2.40ch02 gene_region:38805497-38807567 transcript_region:SL2.40ch02:38805497..38807567+ functional_description:"DAG protein (AHRD V1 ***- B6TYI4_MAIZE)"; NbS00028826g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|316; (*ITAG) Solyc02g079780.1.1 (e_value=3e-118) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:38808718-38809695 transcript_region:SL2.40ch02:38808718..38809695+ functional_description:"Pro-resilin (AHRD V1 *--- B6T4Q5_MAIZE)"; NbS00028826g0014.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|0|205; (*SWP) sp|O81900|DYT1_ARATH (e_value=2e-32) Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1;; (*TAIR) AT4G21330.1 (e_value=1e-33) | Symbols: DYT1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:11349922-11350694 FORWARD LENGTH=207;; (*ITAG) Solyc02g079810.1.1 (e_value=4e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38818280-38819281 transcript_region:SL2.40ch02:38818280..38819281- go_terms:GO:0003700 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00028826g0004.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|111; (*ITAG) Solyc06g011460.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00013035g0002.1 protein AED:0.05 eAED:0.05 QI:407|0.75|0.8|1|0.5|0.6|5|683|194; (*SWP) sp|Q96K19|RN170_HUMAN (e_value=5e-14) RING finger protein 170 OS=Homo sapiens GN=RNF170 PE=2 SV=2;; (*TAIR) AT4G33940.1 (e_value=9e-48) | Symbols: | RING/U-box superfamily protein | chr4:16266085-16267612 FORWARD LENGTH=262;; (*ITAG) Solyc01g103970.2.1 (e_value=1e-76) genomic_reference:SL2.40ch01 gene_region:84211290-84214938 transcript_region:SL2.40ch01:84211290..84214938+ go_terms:GO:0008270 functional_description:"RING finger protein 170 (AHRD V1 ***- C1BQ68_9MAXI); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033149g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|244; (*SWP) sp|Q9FXW4|C80B2_COPJA (e_value=6e-44) Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Coptis japonica GN=CYP80B2 PE=2 SV=1;; (*TAIR) AT3G61040.2 (e_value=2e-31) | Symbols: CYP76C7 | cytochrome P450, family 76, subfamily C, polypeptide 7 | chr3:22594532-22596125 REVERSE LENGTH=395;; (*ITAG) Solyc08g080380.2.1 (e_value=1e-110) genomic_reference:SL2.40ch08 gene_region:60845204-60847167 transcript_region:SL2.40ch08:60845204..60847167+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00058620g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|366; (*SWP) sp|P80042|GGPPS_CAPAN (e_value=0.0) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1;; (*TAIR) AT4G36810.1 (e_value=2e-165) | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371;; (*ITAG) Solyc04g079960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61870171-61871262 transcript_region:SL2.40ch04:61870171..61871262- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase 2 (AHRD V1 ***- Q1A7S9_SOLLC); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00058620g0007.1 protein AED:0.47 eAED:0.47 QI:0|0.8|0.5|0.83|0.8|0.83|6|0|197; (*SWP) sp|Q9SDY5|RCE1_ARATH (e_value=2e-119) NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1;; (*TAIR) AT4G36800.2 (e_value=1e-120) | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17341237-17342148 REVERSE LENGTH=184;; (*ITAG) Solyc04g079970.2.1 (e_value=9e-136) genomic_reference:SL2.40ch04 gene_region:61876931-61880760 transcript_region:SL2.40ch04:61876931..61880760+ go_terms:GO:0019788 functional_description:"Ubiquitin-conjugating enzyme E2 11 (AHRD V1 ***- UBC11_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019788 NbS00015519g0013.1 protein AED:0.03 eAED:0.03 QI:47|1|1|1|1|1|2|142|477; (*SWP) sp|Q40287|UFOG5_MANES (e_value=1e-145) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=1e-134) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc02g063000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29596989-29598828 transcript_region:SL2.40ch02:29596989..29598828- go_terms:GO:0047209 functional_description:"Glucosyltransferase (AHRD V1 **** A7M6J8_9ERIC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209 NbS00015519g0015.1 protein AED:0.03 eAED:0.03 QI:248|1|1|1|0|0.5|2|337|258; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=3e-50) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G36750.1 (e_value=3e-118) | Symbols: | Quinone reductase family protein | chr4:17324642-17326215 FORWARD LENGTH=273;; (*ITAG) Solyc03g034140.2.1 (e_value=7e-114) genomic_reference:SL2.40ch03 gene_region:10112093-10115080 transcript_region:SL2.40ch03:10112093..10115080+ go_terms:GO:0010181,GO:0050625 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6SPB2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0010181,GO:0050625 NbS00015519g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0|0|3|240|142; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-41) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=8e-43) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=9e-56) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00015519g0014.1 protein AED:0.34 eAED:0.34 QI:135|0.93|0.93|1|0.86|0.93|16|0|627; (*SWP) sp|D1ZKF3|AMPP1_SORMK (e_value=8e-178) Probable Xaa-Pro aminopeptidase P OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=AMPP PE=3 SV=1;; (*TAIR) AT4G36760.1 (e_value=0.0) | Symbols: ATAPP1, APP1 | aminopeptidase P1 | chr4:17326688-17329979 FORWARD LENGTH=645;; (*ITAG) Solyc02g062970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29536003-29545884 transcript_region:SL2.40ch02:29536003..29545884+ go_terms:GO:0070006 functional_description:"Xaa-Pro aminopeptidase 2 (AHRD V1 ***- Q93X45_SOLLC); contains Interpro domain(s) IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site IPR000994 Peptidase M24, structural domain "; GO:0070006 NbS00033457g0006.1 protein AED:0.04 eAED:0.04 QI:252|1|1|1|0.75|0.88|9|99|1020; (*SWP) sp|Q9FGS8|C2GR2_ARATH (e_value=0.0) C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1;; (*TAIR) AT5G50170.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding and GRAM domain containing protein | chr5:20421150-20425524 FORWARD LENGTH=1027;; (*ITAG) Solyc03g112280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56781332-56786508 transcript_region:SL2.40ch03:56781332..56786508- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MPJ8_ARALY); contains Interpro domain(s) IPR004182 GRAM "; NbS00025584g0007.1 protein AED:0.04 eAED:0.04 QI:434|0.66|0.7|1|0.88|0.8|10|595|671; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G18670.1 (e_value=0.0) | Symbols: IBS1 | Protein kinase superfamily protein | chr1:6427242-6430696 REVERSE LENGTH=709;; (*ITAG) Solyc03g115660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59353774-59359756 transcript_region:SL2.40ch03:59353774..59359756+ go_terms:GO:0016301 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00025584g0011.1 protein AED:0.21 eAED:0.26 QI:560|0.71|0.68|0.90|0.80|0.77|22|0|1620; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=0.0) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=0.0) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc03g115670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59365407-59367477 transcript_region:SL2.40ch03:59365407..59367477+ functional_description:"Formin 2B (AHRD V1 ***- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00038080g0005.1 protein AED:0.12 eAED:0.14 QI:253|0.25|0.4|1|0.25|0.2|5|0|514; (*SWP) sp|Q9ZWC6|ATB_ARATH (e_value=8e-120) F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1;; (*TAIR) AT1G55590.1 (e_value=6e-121) | Symbols: | RNI-like superfamily protein | chr1:20769476-20771756 REVERSE LENGTH=607;; (*ITAG) Solyc07g066240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64950107-64953735 transcript_region:SL2.40ch07:64950107..64953735+ go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00000227g0005.1 protein AED:0.35 eAED:0.35 QI:246|1|1|1|1|1|6|255|221; (*SWP) sp|Q9FFB3|VP241_ARATH (e_value=2e-95) Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1;; (*TAIR) AT5G22950.1 (e_value=1e-96) | Symbols: VPS24.1 | SNF7 family protein | chr5:7681380-7682720 FORWARD LENGTH=229;; (*ITAG) Solyc11g066260.1.1 (e_value=2e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49059469-49065365 transcript_region:SL2.40ch11:49059469..49065365- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 3 (AHRD V1 ***- B6SM72_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00035195g0009.1 protein AED:0.08 eAED:0.13 QI:0|0|0|0.85|0.33|0.28|7|0|463; (*SWP) sp|O82484|DRL23_ARATH (e_value=2e-31) Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1;; (*TAIR) AT4G10780.1 (e_value=2e-32) | Symbols: | LRR and NB-ARC domains-containing disease resistance protein | chr4:6634779-6637457 REVERSE LENGTH=892;; (*ITAG) Solyc11g007790.1.1 (e_value=2e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2028383-2031076 transcript_region:SL2.40ch11:2028383..2031076+ go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00035195g0008.1 protein AED:0.32 eAED:0.32 QI:188|1|1|1|0.66|0.9|10|283|384; (*SWP) sp|Q8GYE0|PHF1_ARATH (e_value=4e-155) SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2;; (*TAIR) AT3G52190.1 (e_value=3e-156) | Symbols: PHF1 | phosphate transporter traffic facilitator1 | chr3:19354117-19356910 REVERSE LENGTH=398;; (*ITAG) Solyc11g007780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2017935-2024842 transcript_region:SL2.40ch11:2017935..2024842+ go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_TRYBR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00035195g0004.1 protein AED:0.45 eAED:0.87 QI:0|0|0|1|1|1|3|0|87 NbS00054978g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|93; (*TAIR) AT5G14890.1 (e_value=5e-14) | Symbols: | NHL domain-containing protein | chr5:4818056-4821534 FORWARD LENGTH=754;; (*ITAG) Solyc07g007130.1.1 (e_value=2e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1887074-1887550 transcript_region:SL2.40ch07:1887074..1887550- functional_description:"NHL repeat-containing protein (AHRD V1 **-- D7M6N9_ARALY)"; NbS00037975g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|425; (*SWP) sp|Q5PNY6|PUB21_ARATH (e_value=6e-96) U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1;; (*TAIR) AT5G37490.1 (e_value=4e-97) | Symbols: | ARM repeat superfamily protein | chr5:14887744-14889051 FORWARD LENGTH=435;; (*ITAG) Solyc01g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:137781-139489 transcript_region:SL2.40ch01:137781..139489+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00051504g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|201; (*SWP) sp|Q8VZ13|Y1816_ARATH (e_value=2e-25) Uncharacterized protein At1g08160 OS=Arabidopsis thaliana GN=At1g08160 PE=2 SV=1;; (*TAIR) AT5G22870.1 (e_value=8e-42) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:7647056-7647679 REVERSE LENGTH=207;; (*ITAG) Solyc11g066490.1.1 (e_value=2e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49327287-49327913 transcript_region:SL2.40ch11:49327287..49327913+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00033170g0003.1 protein AED:0.08 eAED:0.08 QI:84|1|1|1|0|0.5|2|108|191; (*TAIR) AT2G44380.1 (e_value=6e-54) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073880.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:70459952-70460560 transcript_region:SL2.40ch01:70459952..70460560- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9LRV1_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00039088g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|84; (*SWP) sp|Q9U7D0|H4_MASBA (e_value=5e-29) Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3;; (*TAIR) AT1G07660.2 (e_value=4e-30) | Symbols: | Histone superfamily protein | chr1:2369212-2369523 FORWARD LENGTH=86;; (*ITAG) Solyc11g072840.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53109948-53110259 transcript_region:SL2.40ch11:53109948..53110259- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0005634,GO:0003677 NbS00022740g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|0|528; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=5e-118) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00040005g0005.1 protein AED:0.25 eAED:0.25 QI:200|0.75|0.88|1|0.75|0.88|9|900|410; (*SWP) sp|Q9WUU9|MCM3A_MOUSE (e_value=6e-22) 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2;; (*TAIR) AT3G54380.1 (e_value=2e-122) | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr3:20133985-20136752 REVERSE LENGTH=406;; (*ITAG) Solyc06g061120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35519666-35525950 transcript_region:SL2.40ch06:35519666..35525950+ functional_description:"MCM3-associated protein (Fragment) (AHRD V1 **-- Q6DRP0_DANRE); contains Interpro domain(s) IPR005062 SAC3/GANP/Nin1/mts3/eIF-3 p25 "; NbS00001461g0006.1 protein AED:0.16 eAED:0.16 QI:271|1|1|1|0.5|0.33|3|201|193; (*SWP) sp|B9HTK2|CSPLI_POPTR (e_value=6e-76) CASP-like protein POPTRDRAFT_822486 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1;; (*TAIR) AT3G55390.1 (e_value=3e-63) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:20534785-20535620 FORWARD LENGTH=194;; (*ITAG) Solyc04g011420.2.1 (e_value=5e-109) genomic_reference:SL2.40ch04 gene_region:3881797-3883525 transcript_region:SL2.40ch04:3881797..3883525- functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_POPTR); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00001461g0007.1 protein AED:0.43 eAED:0.45 QI:193|0.6|0.66|1|0.4|0.66|6|0|131; (*SWP) sp|Q42540|UBC7_ARATH (e_value=2e-54) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1;; (*TAIR) AT5G59300.1 (e_value=5e-55) | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919868-23921304 REVERSE LENGTH=203;; (*ITAG) Solyc05g054540.2.1 (e_value=5e-60) genomic_reference:SL2.40ch05 gene_region:63586295-63589962 transcript_region:SL2.40ch05:63586295..63589962+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00005308g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.63|0.5|0.91|0.90|0.91|12|0|895; (*SWP) sp|Q64M78|OML4_ORYSJ (e_value=0.0) Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1;; (*TAIR) AT5G61960.2 (e_value=2e-171) | Symbols: AML1, ML1 | MEI2-like protein 1 | chr5:24879001-24883483 REVERSE LENGTH=915;; (*ITAG) Solyc05g023740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29171601-29178176 transcript_region:SL2.40ch05:29171601..29178176+ go_terms:GO:0005515,GO:0003723 functional_description:"MEI2-like RNA binding protein (AHRD V1 **-* Q64M78_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0005515,GO:0003723 NbS00059539g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|1|1|2|503|176; (*TAIR) AT4G32750.1 (e_value=4e-69) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15796415-15798091 REVERSE LENGTH=293;; (*ITAG) Solyc08g068350.2.1 (e_value=2e-96) genomic_reference:SL2.40ch08 gene_region:54652779-54659355 transcript_region:SL2.40ch08:54652779..54659355- functional_description:"Unknown Protein (AHRD V1)"; NbS00011465g0004.1 protein AED:0.12 eAED:0.12 QI:67|1|1|1|0.62|0.66|9|113|280; (*SWP) sp|Q9GSB0|CRTP1_DICDI (e_value=8e-13) Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1;; (*TAIR) AT5G12170.2 (e_value=8e-120) | Symbols: CLT3 | CRT (chloroquine-resistance transporter)-like transporter 3 | chr5:3931649-3934961 FORWARD LENGTH=452;; (*ITAG) Solyc12g099810.1.1 (e_value=7e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65140093-65148741 transcript_region:SL2.40ch12:65140093..65148741- functional_description:"Crt homolog 1 (AHRD V1 **-- CRTP1_DICDI)"; NbS00020343g0004.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|270; (*ITAG) Solyc01g080500.2.1 (e_value=1e-33) genomic_reference:SL2.40ch01 gene_region:72241800-72243135 transcript_region:SL2.40ch01:72241800..72243135- functional_description:"Unknown Protein (AHRD V1)"; NbS00020343g0005.1 protein AED:0.30 eAED:0.41 QI:0|0|0|1|0|0|3|0|157; (*ITAG) Solyc11g065520.1.1 (e_value=7e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00037321g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.71|1|0.83|0.71|7|0|491; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=9e-137) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G62830.2 (e_value=0.0) | Symbols: UXS2, ATUXS2 | NAD(P)-binding Rossmann-fold superfamily protein | chr3:23232539-23235353 FORWARD LENGTH=445;; (*ITAG) Solyc12g099480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64957950-64961604 transcript_region:SL2.40ch12:64957950..64961604+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_PHOLL); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00037321g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|694; (*SWP) sp|Q9STF3|PP265_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1;; (*TAIR) AT3G46790.1 (e_value=0.0) | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657;; (*ITAG) Solyc11g008940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3093524-3095482 transcript_region:SL2.40ch11:3093524..3095482+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00048100g0007.1 protein AED:0.38 eAED:0.38 QI:110|1|0.85|1|1|1|7|0|345; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=3e-71) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT3G55640.1 (e_value=6e-159) | Symbols: | Mitochondrial substrate carrier family protein | chr3:20640048-20642411 FORWARD LENGTH=332;; (*ITAG) Solyc09g011360.2.1 (e_value=3e-165) genomic_reference:SL2.40ch09 gene_region:4697445-4700991 transcript_region:SL2.40ch09:4697445..4700991- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10NJ7_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00060503g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|437|643; (*SWP) sp|Q39117|TGT2_ARATH (e_value=1e-47) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76880.1 (e_value=4e-70) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:28865594-28867931 FORWARD LENGTH=603;; (*ITAG) Solyc12g056510.1.1 (e_value=4e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47802588-47804951 transcript_region:SL2.40ch12:47802588..47804951- go_terms:GO:0003677 functional_description:"GT-2 factor (Fragment) (AHRD V1 *--- Q8W240_SOYBN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00003001g0002.1 protein AED:0.17 eAED:0.61 QI:0|0|0|1|0|0|5|0|234; (*ITAG) Solyc08g082510.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62444057-62445175 transcript_region:SL2.40ch08:62444057..62445175+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00008753g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.42|0.85|0.5|0.42|7|0|376; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=2e-178) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=2e-157) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc11g071830.1.1 (e_value=2e-180) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52265280-52268287 transcript_region:SL2.40ch11:52265280..52268287- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaj (AHRD V1 ***- Q17AX7_AEDAE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00008753g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.71|0.62|0.87|0.71|0.75|8|709|334; (*SWP) sp|Q9FX99|Y1497_ARATH (e_value=2e-46) Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana GN=At1g49730 PE=1 SV=1;; (*TAIR) AT5G22050.2 (e_value=2e-93) | Symbols: | Protein kinase superfamily protein | chr5:7301467-7303209 FORWARD LENGTH=307;; (*ITAG) Solyc11g071820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52259863-52264687 transcript_region:SL2.40ch11:52259863..52264687+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM68_9VIRI); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468 NbS00058029g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|319; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=8e-27) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT5G14980.1 (e_value=1e-114) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:4849600-4850583 FORWARD LENGTH=327;; (*ITAG) Solyc02g069930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34286456-34287415 transcript_region:SL2.40ch02:34286456..34287415- go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00058029g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.4|1|0.75|0.8|5|385|748; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=0.0) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT2G34730.1 (e_value=1e-83) | Symbols: | myosin heavy chain-related | chr2:14654611-14657443 FORWARD LENGTH=825;; (*ITAG) Solyc02g069940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34291571-34298923 transcript_region:SL2.40ch02:34291571..34298923- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00058029g0003.1 protein AED:0.44 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|154; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=8e-43) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT2G34730.2 (e_value=1e-18) | Symbols: | myosin heavy chain-related | chr2:14654611-14657443 FORWARD LENGTH=825;; (*ITAG) Solyc02g069940.2.1 (e_value=4e-50) genomic_reference:SL2.40ch02 gene_region:34291571-34298923 transcript_region:SL2.40ch02:34291571..34298923- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbC25818478g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|39; (*ITAG) Solyc09g005590.2.1 (e_value=1e-18) genomic_reference:SL2.40ch09 gene_region:404657-406063 transcript_region:SL2.40ch09:404657..406063+ go_terms:GO:0045454 functional_description:"SelT-like protein (AHRD V1 ***- SELT_ARATH); contains Interpro domain(s) IPR019389 Selenoprotein T "; GO:0045454 NbC25818478g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.4|1|1|1|5|207|53 NbS00015612g0002.1 protein AED:0.06 eAED:0.06 QI:127|-1|0|1|-1|1|1|0|186; (*TAIR) AT4G35220.1 (e_value=8e-44) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc01g107700.2.1 (e_value=5e-70) genomic_reference:SL2.40ch01 gene_region:86915524-86922302 transcript_region:SL2.40ch01:86915524..86922302+ go_terms:GO:0004061 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061 NbS00015612g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|74; (*SWP) sp|Q9M4W3|ISPF_CATRO (e_value=4e-43) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1;; (*TAIR) AT1G63970.2 (e_value=2e-43) | Symbols: ISPF, MECPS | isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=223;; (*ITAG) Solyc08g081570.2.1 (e_value=5e-47) genomic_reference:SL2.40ch08 gene_region:61751474-61756267 transcript_region:SL2.40ch08:61751474..61756267- go_terms:GO:0008685,GO:0005515 functional_description:"2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase (AHRD V1 **** A9ZN13_HEVBR); contains Interpro domain(s) IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core "; GO:0008685,GO:0005515 NbS00015612g0007.1 protein AED:0.21 eAED:0.21 QI:118|0.6|0.5|1|0.8|0.66|6|0|480; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1;; (*TAIR) AT4G11280.1 (e_value=0.0) | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 | chr4:6864168-6865922 FORWARD LENGTH=495;; (*ITAG) Solyc08g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61733933-61736466 transcript_region:SL2.40ch08:61733933..61736466+ go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96580_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00035951g0006.1 protein AED:0.35 eAED:0.39 QI:9|0.66|0.75|1|0.66|0.75|4|212|284; (*TAIR) AT3G47860.1 (e_value=5e-140) | Symbols: CHL | chloroplastic lipocalin | chr3:17656778-17658269 REVERSE LENGTH=353;; (*ITAG) Solyc12g005180.1.1 (e_value=1e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:124158-127837 transcript_region:SL2.40ch12:124158..127837- go_terms:GO:0005488,GO:0006810 functional_description:"Chloroplast lipocalin (AHRD V1 ***- Q38JB4_SOLTU); contains Interpro domain(s) IPR013208 Lipocalin-like "; GO:0005488,GO:0006810 NbS00022154g0003.1 protein AED:0.11 eAED:0.11 QI:132|1|1|1|0.86|0.82|23|276|1402; (*SWP) sp|Q3EBC8|DCL2_ARATH (e_value=0.0) Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2;; (*TAIR) AT3G03300.3 (e_value=0.0) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388;; (*ITAG) Solyc06g048960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28551172-28563656 transcript_region:SL2.40ch06:28551172..28563656- go_terms:GO:0005515,GO:0004540 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-** RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515,GO:0004540 NbS00009510g0004.1 protein AED:0.33 eAED:0.33 QI:0|1|0.66|1|0.8|1|6|509|232; (*SWP) sp|B0DZL3|AMPP1_LACBS (e_value=1e-98) Probable Xaa-Pro aminopeptidase P OS=Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN=AMPP PE=3 SV=1;; (*TAIR) AT3G05350.1 (e_value=3e-143) | Symbols: | Metallopeptidase M24 family protein | chr3:1527103-1533843 REVERSE LENGTH=710;; (*ITAG) Solyc01g099110.2.1 (e_value=9e-164) genomic_reference:SL2.40ch01 gene_region:81192109-81202257 transcript_region:SL2.40ch01:81192109..81202257- go_terms:GO:0016787,GO:0009987 functional_description:"Xaa-pro aminopeptidase (AHRD V1 **-- A1DF27_NEOFI); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0016787,GO:0009987 NbS00005553g0106.1 protein AED:0.06 eAED:0.06 QI:359|0.25|0.4|1|0.25|0.2|5|462|854 NbS00014787g0014.1 protein AED:0.13 eAED:0.13 QI:217|1|1|1|1|1|4|434|232; (*SWP) sp|Q9SWS1|ACFR2_ARATH (e_value=1e-106) Probable transmembrane ascorbate ferrireductase 2 OS=Arabidopsis thaliana GN=CYB561B PE=2 SV=1;; (*TAIR) AT5G38630.1 (e_value=8e-108) | Symbols: ACYB-1, CYB-1 | cytochrome B561-1 | chr5:15466141-15467511 FORWARD LENGTH=230;; (*ITAG) Solyc02g065580.2.1 (e_value=3e-133) genomic_reference:SL2.40ch02 gene_region:31319010-31323703 transcript_region:SL2.40ch02:31319010..31323703- go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX4_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00014787g0013.1 protein AED:0.27 eAED:0.27 QI:0|0.90|0.75|1|0.72|0.75|12|374|412; (*SWP) sp|Q1PET6|ICML2_ARATH (e_value=0.0) Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 OS=Arabidopsis thaliana GN=ICMEL2 PE=2 SV=1;; (*TAIR) AT3G02410.1 (e_value=0.0) | Symbols: ICME-LIKE2 | alpha/beta-Hydrolases superfamily protein | chr3:492118-494877 REVERSE LENGTH=422;; (*ITAG) Solyc05g010050.2.1 (e_value=5e-176) genomic_reference:SL2.40ch05 gene_region:4244724-4252159 transcript_region:SL2.40ch05:4244724..4252159- go_terms:GO:0010296 functional_description:"Alpha/beta hydrolase fold-3 (AHRD V1 *--- Q1BFL1_MYCSS); contains Interpro domain(s) IPR002018 Carboxylesterase, type B "; GO:0010296 NbS00014787g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|731; (*SWP) sp|P93005|PP181_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1;; (*TAIR) AT2G33680.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:14249608-14251791 FORWARD LENGTH=727;; (*ITAG) Solyc02g065560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31297943-31300108 transcript_region:SL2.40ch02:31297943..31300108+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LGC7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00014787g0006.1 protein AED:0.49 eAED:0.74 QI:0|0|0|0.66|1|1|3|0|106 NbS00019218g0001.1 protein AED:0.40 eAED:0.52 QI:0|0|0|0.66|1|1|3|0|70 NbS00009817g0119.1 protein AED:0.48 eAED:0.79 QI:0|0|0|1|1|1|5|0|186 NbS00009817g0123.1 protein AED:0.18 eAED:0.18 QI:222|0.94|0.88|1|0.76|0.72|18|833|1119 NbS00009817g0120.1 protein AED:0.19 eAED:0.19 QI:149|1|1|1|0|1|2|267|202 NbS00006050g0021.1 protein AED:0.05 eAED:0.05 QI:365|1|1|1|0.87|0.88|9|387|225; (*SWP) sp|Q5RC69|DCTD_PONAB (e_value=4e-63) Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1;; (*TAIR) AT3G48540.1 (e_value=1e-125) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr3:17989798-17992015 REVERSE LENGTH=232;; (*ITAG) Solyc03g111350.2.1 (e_value=5e-154) genomic_reference:SL2.40ch03 gene_region:56005264-56008568 transcript_region:SL2.40ch03:56005264..56008568- go_terms:GO:0030413 functional_description:"Deoxycytidylate deaminase-like (AHRD V1 ***- Q5JN09_ORYSJ); contains Interpro domain(s) IPR015517 Cytidine deaminase "; GO:0030413 NbS00006050g0019.1 protein AED:0.06 eAED:0.06 QI:295|0.77|0.8|1|1|1|10|242|469; (*SWP) sp|P38557|TBG1_ARATH (e_value=0.0) Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1;; (*TAIR) AT3G61650.1 (e_value=0.0) | Symbols: TUBG1 | gamma-tubulin | chr3:22812601-22815011 REVERSE LENGTH=474;; (*ITAG) Solyc03g111380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56018424-56026055 transcript_region:SL2.40ch03:56018424..56026055- go_terms:GO:0005200 functional_description:"Tubulin beta-1 chain (AHRD V1 ***- C1BSD0_9MAXI); contains Interpro domain(s) IPR002454 Gamma tubulin "; GO:0005200 NbS00006050g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|191; (*TAIR) AT1G21320.2 (e_value=6e-19) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc03g082710.2.1 (e_value=6e-78) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00006050g0028.1 protein AED:0.26 eAED:0.30 QI:0|0.87|0.88|1|0.62|0.66|9|442|288; (*TAIR) AT5G63280.1 (e_value=9e-101) | Symbols: | C2H2-like zinc finger protein | chr5:25367085-25368848 FORWARD LENGTH=271;; (*ITAG) Solyc03g111370.2.1 (e_value=1e-159) genomic_reference:SL2.40ch03 gene_region:56013519-56017588 transcript_region:SL2.40ch03:56013519..56017588- go_terms:GO:0003676 functional_description:"Zinc finger protein (AHRD V1 ***- B6STE4_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676 NbS00006050g0030.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.8|0|0.4|5|0|193; (*TAIR) AT5G50330.2 (e_value=2e-26) | Symbols: | Protein kinase superfamily protein | chr5:20485406-20488563 REVERSE LENGTH=463;; (*ITAG) Solyc03g110940.2.1 (e_value=7e-39) genomic_reference:SL2.40ch03 gene_region:55715212-55723689 transcript_region:SL2.40ch03:55715212..55723689+ go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-- ADCK1_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00006050g0024.1 protein AED:0.00 eAED:0.00 QI:118|1|1|1|1|1|2|460|480; (*SWP) sp|P73245|Y1917_SYNY3 (e_value=4e-96) Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1917 PE=3 SV=1;; (*TAIR) AT5G63290.1 (e_value=0.0) | Symbols: | Radical SAM superfamily protein | chr5:25369349-25370894 REVERSE LENGTH=484;; (*ITAG) Solyc03g111360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56010796-56012961 transcript_region:SL2.40ch03:56010796..56012961+ go_terms:GO:0051536,GO:0005737 functional_description:"Oxygen-independent coproporphyrinogen III oxidase-like protein sll1917 (AHRD V1 ***- B6UAC6_MAIZE); contains Interpro domain(s) IPR004559 Putative oxygen-independent coproporphyrinogen III oxidase "; GO:0051536,GO:0005737 NbS00006050g0023.1 protein AED:0.04 eAED:0.04 QI:4|1|0.5|1|1|0.75|4|0|140; (*SWP) sp|Q5R8W1|KLDC4_PONAB (e_value=4e-22) Kelch domain-containing protein 4 OS=Pongo abelii GN=KLHDC4 PE=2 SV=1;; (*TAIR) AT5G50310.1 (e_value=5e-56) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:20474562-20479281 FORWARD LENGTH=666;; (*ITAG) Solyc03g111390.2.1 (e_value=1e-59) genomic_reference:SL2.40ch03 gene_region:56029307-56039278 transcript_region:SL2.40ch03:56029307..56039278+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 4 (AHRD V1 ***- B2VXE7_PYRTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00006050g0025.1 protein AED:0.20 eAED:0.20 QI:259|1|1|1|0.76|0.92|14|367|426; (*SWP) sp|O23034|UBA5_ARATH (e_value=0.0) Ubiquitin-like modifier-activating enzyme 5 OS=Arabidopsis thaliana GN=At1g05350 PE=3 SV=2;; (*TAIR) AT1G05350.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:1560891-1564005 REVERSE LENGTH=431;; (*ITAG) Solyc03g111340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55998016-56004770 transcript_region:SL2.40ch03:55998016..56004770+ go_terms:GO:0005515,GO:0008641 functional_description:"Ubiquitin-like modifier-activating enzyme 5 (AHRD V1 **-* D3PG49_9MAXI); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0005515,GO:0008641 NbS00006050g0034.1 protein AED:0.25 eAED:0.25 QI:170|0.83|0.85|1|0.66|0.71|7|334|222; (*SWP) sp|Q66I61|CX056_DANRE (e_value=2e-13) UPF0428 protein CXorf56 homolog OS=Danio rerio GN=zgc:103697 PE=2 SV=1;; (*TAIR) AT5G63440.2 (e_value=1e-141) | Symbols: | Protein of unknown function (DUF167) | chr5:25406360-25408195 FORWARD LENGTH=232;; (*ITAG) Solyc03g111330.2.1 (e_value=2e-160) genomic_reference:SL2.40ch03 gene_region:55993591-55997477 transcript_region:SL2.40ch03:55993591..55997477+ functional_description:"UPF0235 protein yggU (AHRD V1 *-*- B5P4D4_SALET); contains Interpro domain(s) IPR003746 Protein of unknown function DUF167 "; NbS00002194g0004.1 protein AED:0.07 eAED:0.07 QI:202|0.75|0.8|1|0.75|0.6|5|541|121; (*SWP) sp|P93171|CALM_HELAN (e_value=2e-46) Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3;; (*TAIR) AT4G14640.1 (e_value=4e-47) | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397800-8399996 FORWARD LENGTH=151;; (*ITAG) Solyc01g105630.2.1 (e_value=1e-72) genomic_reference:SL2.40ch01 gene_region:85497235-85498101 transcript_region:SL2.40ch01:85497235..85498101+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006829g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|420; (*SWP) sp|Q9FLF4|PUB27_ARATH (e_value=5e-117) U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1;; (*TAIR) AT5G64660.1 (e_value=4e-118) | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY protein 2 | chr5:25842119-25843381 REVERSE LENGTH=420;; (*ITAG) Solyc11g005700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:547491-548753 transcript_region:SL2.40ch11:547491..548753+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MRW3_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00001423g0002.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|1|2|0|129 NbS00001423g0005.1 protein AED:0.05 eAED:0.05 QI:13|1|0.66|1|1|0.66|3|0|414; (*TAIR) AT1G75710.1 (e_value=1e-95) | Symbols: | C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462;; (*ITAG) Solyc11g013220.1.1 (e_value=4e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6128095-6131640 transcript_region:SL2.40ch11:6128095..6131640+ go_terms:GO:0005622 functional_description:"Os04g0690100 protein (Fragment) (AHRD V1 ***- Q0J8S4_ORYSJ)"; GO:0005622 NbS00009409g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|138 NbS00009409g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|0.91|1|0.90|0.83|12|0|1017; (*SWP) sp|Q3S4A7|AHK5_ARATH (e_value=0.0) Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=2 SV=1;; (*TAIR) AT5G10720.1 (e_value=0.0) | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | chr5:3386835-3390541 FORWARD LENGTH=922;; (*ITAG) Solyc08g068960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55242155-55249351 transcript_region:SL2.40ch08:55242155..55249351+ go_terms:GO:0004673 functional_description:"Histidine kinase 1 (AHRD V1 *-** Q9FRY7_MAIZE); contains Interpro domain(s) IPR004358 Signal transduction histidine kinase-related protein, C-terminal "; GO:0004673 NbS00042364g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|302; (*SWP) sp|Q9FJE6|PP437_ARATH (e_value=6e-104) Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1;; (*TAIR) AT5G59900.1 (e_value=5e-105) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24123983-24126706 REVERSE LENGTH=907;; (*ITAG) Solyc11g073270.1.1 (e_value=1e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014192g0001.1 protein AED:0.28 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|528; (*SWP) sp|Q9FI49|PP428_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2;; (*TAIR) AT5G50990.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:20739453-20741281 FORWARD LENGTH=534;; (*ITAG) Solyc06g068810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39027366-39029601 transcript_region:SL2.40ch06:39027366..39029601- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014192g0003.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.25|1|1|4|0|112 NbS00014192g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.71|1|0.83|0.85|7|241|282; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=1e-17) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G01630.1 (e_value=1e-101) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc06g068800.2.1 (e_value=2e-157) genomic_reference:SL2.40ch06 gene_region:39024155-39026253 transcript_region:SL2.40ch06:39024155..39026253+ go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00026261g0005.1 protein AED:0.37 eAED:0.38 QI:0|0.83|0.57|1|1|1|7|0|399; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=4e-60) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT3G22750.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:8037364-8039096 REVERSE LENGTH=378;; (*ITAG) Solyc09g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63579551-63584081 transcript_region:SL2.40ch09:63579551..63584081- go_terms:GO:0004708 functional_description:"Kinase-like protein (AHRD V1 **** Q9LUI6_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00000251g0009.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|147; (*ITAG) Solyc00g014850.1.1 (e_value=3e-62) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch00 gene_region:11073759-11074070 transcript_region:SL2.40ch00:11073759..11074070- functional_description:"ORF86 (AHRD V1 ***- B6VJY4_VITVI)"; NbS00000251g0015.1 protein AED:0.28 eAED:0.37 QI:0|0|0|1|0|0.5|2|0|130; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-34) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=2e-38) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc03g061540.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:27743296-27743634 transcript_region:SL2.40ch03:27743296..27743634+ functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00000251g0017.1 protein AED:0.86 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|106 NbS00000251g0019.1 protein AED:0.42 eAED:0.52 QI:0|0|0|0.75|0|0|4|0|242 NbS00000251g0018.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|3|0|219; (*ITAG) Solyc00g014860.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11074683-11074992 transcript_region:SL2.40ch00:11074683..11074992- functional_description:"Unknown Protein (AHRD V1)"; NbS00000251g0013.1 protein AED:0.46 eAED:0.53 QI:0|0|0|1|0|0|3|0|89 NbS00000251g0014.1 protein AED:0.38 eAED:0.86 QI:27|0|0|1|0|0|2|54|36 NbS00038364g0003.1 protein AED:0.02 eAED:0.02 QI:305|1|1|1|0.85|0.87|8|137|976; (*SWP) sp|P36917|XYNA_THESA (e_value=5e-36) Endo-1,4-beta-xylanase A OS=Thermoanaerobacter saccharolyticum GN=xynA PE=1 SV=1;; (*TAIR) AT1G58370.1 (e_value=0.0) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc04g077190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59708320-59715771 transcript_region:SL2.40ch04:59708320..59715771+ go_terms:GO:0031176 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *-** B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0031176 NbS00018994g0008.1 protein AED:0.10 eAED:0.11 QI:156|0.66|0.42|1|0.83|0.71|7|0|253; (*TAIR) AT1G21320.2 (e_value=8e-44) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc06g052080.2.1 (e_value=4e-101) genomic_reference:SL2.40ch06 gene_region:32245549-32253815 transcript_region:SL2.40ch06:32245549..32253815+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7KTY4_ARALY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00018994g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.2|1|0|0|5|267|154; (*SWP) sp|Q94A65|STR14_ARATH (e_value=2e-84) Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1;; (*TAIR) AT4G27700.1 (e_value=1e-85) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr4:13826541-13827673 REVERSE LENGTH=224;; (*ITAG) Solyc06g053140.2.1 (e_value=4e-96) genomic_reference:SL2.40ch06 gene_region:32363112-32365707 transcript_region:SL2.40ch06:32363112..32365707+ functional_description:"Senescence-associated protein DIN1 (AHRD V1 *--- B6U016_MAIZE); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00030518g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|346|185; (*SWP) sp|Q94KR9|IF1C_SOLLC (e_value=1e-85) Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum GN=infA PE=2 SV=1;; (*TAIR) AT4G11175.1 (e_value=5e-30) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:6818162-6818806 FORWARD LENGTH=141;; (*ITAG) Solyc12g098350.1.1 (e_value=6e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64227351-64227821 transcript_region:SL2.40ch12:64227351..64227821- go_terms:GO:0006413 functional_description:"Translation initiation factor 1 (AHRD V1 *-*- D1M7Q2_PARAR); contains Interpro domain(s) IPR006196 S1, IF1 type "; GO:0006413 NbS00030518g0001.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|4|0|288; (*TAIR) AT5G02850.1 (e_value=5e-44) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:652159-653439 FORWARD LENGTH=426;; (*ITAG) Solyc02g087180.2.1 (e_value=1e-69) genomic_reference:SL2.40ch02 gene_region:44235465-44237974 transcript_region:SL2.40ch02:44235465..44237974+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030518g0010.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0.33|3|0|76; (*TAIR) AT1G04900.1 (e_value=9e-17) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=5e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00030518g0007.1 protein AED:0.52 eAED:0.55 QI:0|0|0|0.66|1|0.66|3|0|94; (*TAIR) AT1G04900.1 (e_value=4e-24) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=4e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00030518g0011.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|92; (*TAIR) AT1G04900.1 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00008185g0010.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|249 NbS00008185g0003.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|186; (*TAIR) AT2G30395.1 (e_value=5e-35) | Symbols: ATOFP17, OFP17 | ovate family protein 17 | chr2:12954409-12955083 REVERSE LENGTH=195;; (*ITAG) Solyc01g090870.1.1 (e_value=3e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76350142-76350666 transcript_region:SL2.40ch01:76350142..76350666+ functional_description:"ATOFP17/OFP17 (AHRD V1 ***- D7LBN3_ARALY)"; NbS00008185g0106.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|188 NbS00008185g0117.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|1|1|3|0|416 NbS00008185g0103.1 protein AED:0.21 eAED:0.21 QI:107|1|1|1|1|1|2|292|95 NbS00008185g0105.1 protein AED:0.22 eAED:0.22 QI:248|1|1|1|0.75|0.61|13|619|587 NbS00008185g0104.1 protein AED:0.77 eAED:0.86 QI:0|0|0|1|1|1|2|0|95 NbS00003040g0001.1 protein AED:0.50 eAED:0.78 QI:0|0|0|0.5|1|1|2|0|108 NbS00045150g0001.1 protein AED:0.20 eAED:0.21 QI:185|0|0.5|1|0|0|2|0|79; (*TAIR) AT4G02380.1 (e_value=7e-23) | Symbols: SAG21, AtLEA5 | senescence-associated gene 21 | chr4:1046414-1046807 REVERSE LENGTH=97;; (*ITAG) Solyc06g009140.2.1 (e_value=3e-30) genomic_reference:SL2.40ch06 gene_region:3089237-3090327 transcript_region:SL2.40ch06:3089237..3090327+ go_terms:GO:0006950 functional_description:"Late embryogenesis abundant 3 family protein (AHRD V1 ***- D7KBC5_ARALY); contains Interpro domain(s) IPR004926 Late embryogenesis abundant protein 3 "; GO:0006950 NbS00032115g0005.1 protein AED:0.21 eAED:0.21 QI:28|1|0|1|1|0.5|2|0|237; (*SWP) sp|P54778|PRS6B_SOLTU (e_value=9e-148) 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58290.1 (e_value=6e-141) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082660.2.1 (e_value=4e-151) genomic_reference:SL2.40ch06 gene_region:44701223-44706426 transcript_region:SL2.40ch06:44701223..44706426- go_terms:GO:0005524,GO:0005737,GO:0017111 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0005737,GO:0017111 NbS00011690g0001.1 protein AED:0.34 eAED:0.34 QI:0|0.66|0.5|0.75|1|1|4|0|91; (*SWP) sp|Q38859|RPB11_ARATH (e_value=8e-45) DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1;; (*TAIR) AT3G52090.1 (e_value=6e-46) | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116;; (*ITAG) Solyc11g069910.1.1 (e_value=3e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51605382-51607881 transcript_region:SL2.40ch11:51605382..51607881+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit J (AHRD V1 ***- B4FJS1_MAIZE); contains Interpro domain(s) IPR009025 DNA-directed RNA polymerase, RBP11-like "; GO:0006350 NbS00056128g0003.1 protein AED:0.15 eAED:0.15 QI:417|0.76|0.77|0.94|0.64|0.72|18|181|635; (*SWP) sp|Q8N1E6|FXL14_HUMAN (e_value=1e-15) F-box/LRR-repeat protein 14 OS=Homo sapiens GN=FBXL14 PE=1 SV=1;; (*TAIR) AT1G15740.1 (e_value=9e-151) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc12g009870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3046369-3051336 transcript_region:SL2.40ch12:3046369..3051336+ functional_description:"Leucine-rich repeat-like protein (AHRD V1 ***- Q6K620_ORYSJ); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00033349g0010.1 protein AED:0.04 eAED:0.04 QI:288|0.66|0.5|1|0.66|0.5|4|0|1234; (*SWP) sp|O82345|BAG6_ARATH (e_value=1e-28) BAG family molecular chaperone regulator 6 OS=Arabidopsis thaliana GN=BAG6 PE=1 SV=1;; (*TAIR) AT2G46240.1 (e_value=7e-30) | Symbols: BAG6, ATBAG6 | BCL-2-associated athanogene 6 | chr2:18986586-18989827 FORWARD LENGTH=1043;; (*ITAG) Solyc01g095320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78389556-78394452 transcript_region:SL2.40ch01:78389556..78394452+ go_terms:GO:0006915 functional_description:"BCL-2-associated athanogene 6 (AHRD V1 *-*- D7LDX9_ARALY); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00033349g0015.1 protein AED:0.10 eAED:0.10 QI:449|0.84|0.71|1|0.84|0.78|14|0|994; (*TAIR) AT4G01210.1 (e_value=0.0) | Symbols: | glycosyl transferase family 1 protein | chr4:507738-512362 REVERSE LENGTH=1031;; (*ITAG) Solyc01g095300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78377389-78387204 transcript_region:SL2.40ch01:78377389..78387204+ go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 *-** D2LJY9_RHOVA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00033349g0005.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|268; (*TAIR) AT4G01200.1 (e_value=2e-55) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr4:506783-507535 REVERSE LENGTH=250;; (*ITAG) Solyc01g095360.2.1 (e_value=1e-113) genomic_reference:SL2.40ch01 gene_region:78397573-78398720 transcript_region:SL2.40ch01:78397573..78398720+ functional_description:"C2 domain-containing protein (AHRD V1 *-*- D7M4Y1_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00033349g0004.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|184; (*ITAG) Solyc01g095350.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:78395130-78395741 transcript_region:SL2.40ch01:78395130..78395741- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00033349g0011.1 protein AED:0.12 eAED:0.12 QI:109|1|1|1|0.87|0.88|9|400|198; (*SWP) sp|Q5RFQ0|FCF1_PONAB (e_value=4e-94) rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1;; (*TAIR) AT2G46230.1 (e_value=1e-123) | Symbols: | PIN domain-like family protein | chr2:18984459-18985850 REVERSE LENGTH=196;; (*ITAG) Solyc03g121130.2.1 (e_value=8e-144) genomic_reference:SL2.40ch03 gene_region:63397250-63400822 transcript_region:SL2.40ch03:63397250..63400822+ go_terms:GO:0016563 functional_description:"rRNA-processing protein FCF1 homolog (AHRD V1 ***- B5X7B1_SALSA); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; GO:0016563 NbS00019240g0003.1 protein AED:0.00 eAED:0.00 QI:326|1|1|1|0.5|0.33|3|941|139; (*ITAG) Solyc00g005870.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3435133-3436360 transcript_region:SL2.40ch00:3435133..3436360- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00053730g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0|0.66|1|0.33|3|0|110; (*SWP) sp|Q56XE4|RU1C_ARATH (e_value=4e-33) U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=1 SV=1;; (*TAIR) AT4G03120.1 (e_value=3e-34) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:1385747-1387331 FORWARD LENGTH=207;; (*ITAG) Solyc06g008860.2.1 (e_value=6e-58) genomic_reference:SL2.40ch06 gene_region:2801290-2806168 transcript_region:SL2.40ch06:2801290..2806168- go_terms:GO:0005634,GO:0008270 functional_description:"U1 small nuclear ribonucleoprotein C protein (AHRD V1 *-*- C1MKH9_MICPS); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00017586g0010.1 protein AED:0.10 eAED:0.31 QI:0|0.8|0.66|1|0|0|6|156|177; (*TAIR) AT5G20635.1 (e_value=1e-29) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). | chr5:6979314-6981767 REVERSE LENGTH=251;; (*ITAG) Solyc07g041980.2.1 (e_value=4e-42) genomic_reference:SL2.40ch07 gene_region:52089837-52093988 transcript_region:SL2.40ch07:52089837..52093988- go_terms:GO:0006310,GO:0005576 functional_description:"Seed length and weight protein long form for short seed (AHRD V1 *--- C6L699_ORYSI)"; GO:0006310,GO:0005576 NbS00017586g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|191; (*SWP) sp|O65351|SUBL_ARATH (e_value=8e-34) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=1e-88) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc07g041970.2.1 (e_value=1e-113) genomic_reference:SL2.40ch07 gene_region:52037727-52040636 transcript_region:SL2.40ch07:52037727..52040636+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6SZ82_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017586g0009.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0.5|0|3|0|385; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-127) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G05920.1 (e_value=7e-160) | Symbols: | Subtilase family protein | chr2:2269831-2272207 REVERSE LENGTH=754;; (*ITAG) Solyc07g041970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52037727-52040636 transcript_region:SL2.40ch07:52037727..52040636+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- B6SZ82_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00014205g0122.1 protein AED:0.09 eAED:0.09 QI:0|0.92|0.85|1|0.92|0.85|14|230|588 NbS00014205g0130.1 protein AED:0.04 eAED:0.14 QI:0|0|0|0.8|0.75|0.8|5|0|852 NbS00014205g0101.1 protein AED:0.16 eAED:0.17 QI:0|0.5|0|1|1|1|3|0|626 NbS00014205g0103.1 protein AED:0.28 eAED:0.28 QI:0|0.25|0.2|1|1|1|5|180|652 NbS00014205g0104.1 protein AED:0.47 eAED:0.62 QI:0|0|0|1|1|1|3|87|69 NbS00053101g0008.1 protein AED:0.04 eAED:0.04 QI:251|1|0.88|1|0.62|0.77|9|0|714; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-66) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G20430.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr4:11017656-11021105 REVERSE LENGTH=856;; (*ITAG) Solyc02g030130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15873877-15889697 transcript_region:SL2.40ch02:15873877..15889697- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001600g0012.1 protein AED:0.21 eAED:0.21 QI:0|1|0.88|1|0.87|0.88|9|129|560; (*SWP) sp|Q39033|PLCD2_ARATH (e_value=0.0) Phosphoinositide phospholipase C 2 OS=Arabidopsis thaliana GN=PLC2 PE=1 SV=1;; (*TAIR) AT3G08510.2 (e_value=0.0) | Symbols: ATPLC2, PLC2 | phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=581;; (*ITAG) Solyc06g051620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31659606-31666640 transcript_region:SL2.40ch06:31659606..31666640- go_terms:GO:0004435 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (Phosphoinositide-specific phospholipase c) (AHRD V1 *-** O49950_SOLTU); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0004435 NbS00001600g0011.1 protein AED:0.39 eAED:0.39 QI:0|1|1|1|0.8|1|6|62|297; (*SWP) sp|Q09695|YA22_SCHPO (e_value=3e-18) Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1;; (*TAIR) AT3G55960.1 (e_value=2e-119) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:20760797-20762892 REVERSE LENGTH=305;; (*ITAG) Solyc06g051520.2.1 (e_value=1e-168) genomic_reference:SL2.40ch06 gene_region:31482740-31498569 transcript_region:SL2.40ch06:31482740..31498569+ go_terms:GO:0016791 functional_description:"Mitochondrial import inner membrane translocase subunit TIM50 (AHRD V1 *--- TIM50_YEAST); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbS00001600g0014.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|3|0|735; (*SWP) sp|Q9LY50|ACCR3_ARATH (e_value=2e-165) Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1;; (*TAIR) AT3G55950.1 (e_value=1e-166) | Symbols: CCR3, ATCRR3 | CRINKLY4 related 3 | chr3:20753903-20756347 REVERSE LENGTH=814;; (*ITAG) Solyc05g052590.1.1 (e_value=1e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61947175-61949559 transcript_region:SL2.40ch05:61947175..61949559+ go_terms:GO:0042803 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0042803 NbS00001600g0013.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|219; (*TAIR) AT5G48050.1 (e_value=4e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19472661-19473770 REVERSE LENGTH=369;; (*ITAG) Solyc11g021010.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:13192387-13192908 transcript_region:SL2.40ch11:13192387..13192908- functional_description:"Polyprotein (AHRD V1 *-*- Q94KV0_ARATH)"; NbS00022391g0004.1 protein AED:0.03 eAED:0.03 QI:180|1|1|1|0.75|0.77|9|215|355; (*TAIR) AT5G09380.1 (e_value=5e-59) | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272;; (*ITAG) Solyc05g051620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61139484-61144048 transcript_region:SL2.40ch05:61139484..61144048+ go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 *-*- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 "; GO:0005666 NbS00019347g0004.1 protein AED:0.36 eAED:0.36 QI:0|0.6|0.62|0.87|0.66|0.81|16|199|393; (*SWP) sp|Q84P54|GATP1_SOLLC (e_value=0.0) Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum GN=GABA-TP1 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=0.0) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc07g043310.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54313638-54320300 transcript_region:SL2.40ch07:54313638..54320300+ go_terms:GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- D2KZ08_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00024741g0014.1 protein AED:0.27 eAED:0.27 QI:221|0.88|0.9|1|0.55|0.5|10|320|265; (*SWP) sp|Q40784|AAPC_CENCI (e_value=2e-108) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G14500.1 (e_value=1e-140) | Symbols: | aldose 1-epimerase family protein | chr5:4674503-4676368 REVERSE LENGTH=306;; (*ITAG) Solyc02g067860.2.1 (e_value=5e-172) genomic_reference:SL2.40ch02 gene_region:32540131-32544141 transcript_region:SL2.40ch02:32540131..32544141+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7M6K2_ARALY); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00024741g0015.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|4|0|275; (*TAIR) AT3G63170.1 (e_value=4e-39) | Symbols: | Chalcone-flavanone isomerase family protein | chr3:23334675-23335993 FORWARD LENGTH=279;; (*ITAG) Solyc02g067870.2.1 (e_value=5e-133) genomic_reference:SL2.40ch02 gene_region:32544191-32545408 transcript_region:SL2.40ch02:32544191..32545408- go_terms:GO:0042398 functional_description:"Chalcone isomerase (AHRD V1 ***- Q0G877_CAMSI); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398 NbS00025166g0010.1 protein AED:0.29 eAED:0.45 QI:0|0|0|1|0.5|0.33|3|0|838; (*SWP) sp|O81825|DRL28_ARATH (e_value=9e-35) Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1;; (*TAIR) AT4G27220.1 (e_value=7e-36) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13633953-13636712 REVERSE LENGTH=919;; (*ITAG) Solyc12g044190.1.1 (e_value=5e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44434035-44437619 transcript_region:SL2.40ch12:44434035..44437619- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00040924g0001.1 protein AED:0.87 eAED:0.88 QI:0|0|0|0.4|1|1|5|0|159 NbS00006444g0011.1 protein AED:0.13 eAED:0.13 QI:178|0.75|0.84|1|0.75|0.84|13|193|420; (*SWP) sp|O49621|MLO1_ARATH (e_value=3e-129) MLO-like protein 1 OS=Arabidopsis thaliana GN=MLO1 PE=1 SV=1;; (*TAIR) AT4G02600.2 (e_value=2e-130) | Symbols: MLO1, ATMLO1 | Seven transmembrane MLO family protein | chr4:1144141-1147156 FORWARD LENGTH=526;; (*ITAG) Solyc06g082820.2.1 (e_value=2e-170) genomic_reference:SL2.40ch06 gene_region:44779673-44784035 transcript_region:SL2.40ch06:44779673..44784035+ go_terms:GO:0016021 functional_description:"MLO-like protein 1 (AHRD V1 ***- C6EWE5_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00006444g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.77|0.6|1|0.77|0.8|10|260|996; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=5e-78) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT4G12770.1 (e_value=4e-79) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:7506736-7511408 REVERSE LENGTH=891;; (*ITAG) Solyc06g082840.2.1 (e_value=1e-173) genomic_reference:SL2.40ch06 gene_region:44788999-44795603 transcript_region:SL2.40ch06:44788999..44795603- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- Q4WUT8_ASPFU); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00006444g0004.1 protein AED:0.38 eAED:0.38 QI:113|0|0.66|0.66|1|1|3|277|86 NbS00006444g0006.1 protein AED:0.36 eAED:0.52 QI:269|0.25|0.2|1|1|1|5|0|168; (*ITAG) Solyc06g082830.2.1 (e_value=7e-43) genomic_reference:SL2.40ch06 gene_region:44784361-44787512 transcript_region:SL2.40ch06:44784361..44787512- functional_description:"Iron-stress related protein (AHRD V1 ***- B4FBU5_MAIZE)"; NbS00048404g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|178; (*TAIR) AT5G20810.1 (e_value=5e-49) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc12g009280.1.1 (e_value=4e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2551862-2552938 transcript_region:SL2.40ch12:2551862..2552938+ go_terms:GO:0005516 functional_description:"Auxin-induced protein-like (AHRD V1 **-- Q69LJ9_ORYSJ); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00015822g0012.1 protein AED:0.14 eAED:0.14 QI:202|0.75|0.77|1|0.75|0.77|9|266|638; (*TAIR) AT5G18440.2 (e_value=1e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). | chr5:6113092-6115748 FORWARD LENGTH=470;; (*ITAG) Solyc01g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79681677-79689334 transcript_region:SL2.40ch01:79681677..79689334+ functional_description:"Polyadenylation factor I complex subunit Yth1 (CPSF subunit) (ISS) (AHRD V1 *-*- Q01E48_OSTTA); contains Interpro domain(s) IPR019496 Nuclear fragile X mental retardation-interacting protein 1, conserved region "; NbS00015822g0014.1 protein AED:0.26 eAED:0.26 QI:21|0.95|0.90|0.95|0.8|0.80|21|244|668; (*SWP) sp|Q5YLB5|GYRA_NICBE (e_value=0.0) DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1;; (*TAIR) AT3G10690.1 (e_value=0.0) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950;; (*ITAG) Solyc01g096900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79648895-79670117 transcript_region:SL2.40ch01:79648895..79670117+ go_terms:GO:0005694 functional_description:"DNA gyrase subunit A family protein (AHRD V1 ***- D7L923_ARALY); contains Interpro domain(s) IPR005743 DNA gyrase, subunit A "; GO:0005694 NbS00015822g0013.1 protein AED:0.23 eAED:0.27 QI:22|0.66|0.71|1|0.5|0.42|7|477|271; (*SWP) sp|Q9FF81|VPS36_ARATH (e_value=7e-93) Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1;; (*TAIR) AT5G04920.1 (e_value=5e-94) | Symbols: | EAP30/Vps36 family protein | chr5:1439172-1441545 REVERSE LENGTH=440;; (*ITAG) Solyc01g096910.2.1 (e_value=1e-135) genomic_reference:SL2.40ch01 gene_region:79670794-79679628 transcript_region:SL2.40ch01:79670794..79679628- go_terms:GO:0003730,GO:0043130 functional_description:"Vacuolar protein sorting 36 family protein (AHRD V1 ***- D7LY74_ARALY); contains Interpro domain(s) IPR007286 EAP30 "; GO:0003730,GO:0043130 NbS00041171g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|137|103; (*SWP) sp|P0CG89|H4_SOYBN (e_value=5e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=3e-53) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=3e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00041171g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|165; (*TAIR) AT5G02640.1 (e_value=7e-34) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:594334-594819 REVERSE LENGTH=161;; (*ITAG) Solyc11g072890.1.1 (e_value=4e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:53146367-53146828 transcript_region:SL2.40ch11:53146367..53146828+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043194g0004.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|71 NbS00007839g0014.1 protein AED:0.01 eAED:0.01 QI:332|1|0.8|1|1|1|5|461|278; (*TAIR) AT4G17720.1 (e_value=1e-121) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc03g097110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52892623-52898264 transcript_region:SL2.40ch03:52892623..52898264- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00007839g0019.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.44|1|0.87|0.88|9|0|606; (*SWP) sp|Q80Y84|KDM5B_MOUSE (e_value=2e-48) Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc03g097090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52885521-52889558 transcript_region:SL2.40ch03:52885521..52889558- functional_description:"Lysine-specific demethylase 5C (AHRD V1 *--- KDM5C_MOUSE); contains Interpro domain(s) IPR003349 Transcription factor jumonji, JmjN "; NbS00007839g0020.1 protein AED:0.22 eAED:0.22 QI:0|1|0.66|1|1|1|3|0|394; (*SWP) sp|Q5SRX1|TM1L2_MOUSE (e_value=2e-22) TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1;; (*TAIR) AT5G16880.2 (e_value=0.0) | Symbols: | Target of Myb protein 1 | chr5:5549658-5551274 FORWARD LENGTH=407;; (*ITAG) Solyc03g097070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52862873-52870296 transcript_region:SL2.40ch03:52862873..52870296- go_terms:GO:0008565 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR014645 Target of Myb protein 1 "; GO:0008565 NbS00007839g0017.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|191; (*SWP) sp|Q9M8U1|CML18_ARATH (e_value=8e-77) Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1;; (*TAIR) AT3G03000.1 (e_value=6e-78) | Symbols: | EF hand calcium-binding protein family | chr3:677388-677885 FORWARD LENGTH=165;; (*ITAG) Solyc03g097100.1.1 (e_value=4e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:52891513-52892004 transcript_region:SL2.40ch03:52891513..52892004+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6UHC3_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00007839g0126.1 protein AED:0.05 eAED:0.05 QI:77|0.83|0.85|1|1|1|7|354|656 NbS00007839g0130.1 protein AED:0.07 eAED:0.07 QI:94|1|1|1|0.87|1|9|345|505 NbS00007839g0127.1 protein AED:0.17 eAED:0.17 QI:177|0.75|0.55|1|0.62|0.66|9|0|687 NbS00007839g0131.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.5|1|0.66|0.5|4|0|1209 NbS00007839g0103.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|136 NbS00007839g0110.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|246 NbS00007839g0137.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.62|1|0.85|0.62|8|0|792 NbS00007839g0128.1 protein AED:0.22 eAED:0.22 QI:0|1|0.66|1|1|1|3|259|116 NbS00007839g0135.1 protein AED:0.46 eAED:0.71 QI:0|0|0.5|1|1|1|2|129|84 NbS00005816g0007.1 protein AED:0.10 eAED:0.11 QI:219|0.5|0.8|1|0.75|0.8|5|432|586; (*TAIR) AT3G55760.3 (e_value=0.0) | Symbols: | unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). | chr3:20700648-20702886 FORWARD LENGTH=578;; (*ITAG) Solyc06g053920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33310350-33315158 transcript_region:SL2.40ch06:33310350..33315158+ functional_description:"Os11g0586300 protein (Fragment) (AHRD V1 ***- Q0IRY4_ORYSJ)"; NbS00018481g0004.1 protein AED:0.16 eAED:0.17 QI:0|1|0.87|1|1|1|8|581|613; (*SWP) sp|Q6AY19|ADCK4_RAT (e_value=2e-136) Uncharacterized aarF domain-containing protein kinase 4 OS=Rattus norvegicus GN=Adck4 PE=2 SV=1;; (*TAIR) AT4G01660.1 (e_value=0.0) | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 1 | chr4:708652-711095 FORWARD LENGTH=623;; (*ITAG) Solyc01g068640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70233998-70244981 transcript_region:SL2.40ch01:70233998..70244981+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 4 (AHRD V1 **-* ADCK4_RAT); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00061449g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|521; (*TAIR) AT3G19430.1 (e_value=8e-124) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc08g066590.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52546648-52548453 transcript_region:SL2.40ch08:52546648..52548453+ functional_description:"Root cap protein 3 (Fragment) (AHRD V1 *-*- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00061449g0009.1 protein AED:0.21 eAED:0.23 QI:76|1|0.9|1|0.77|0.9|10|0|443; (*SWP) sp|Q8RXH2|NUP85_ARATH (e_value=2e-164) Nuclear pore complex protein Nup85 OS=Arabidopsis thaliana GN=NUP85 PE=2 SV=1;; (*TAIR) AT4G32910.1 (e_value=2e-165) | Symbols: | CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15881364-15885210 FORWARD LENGTH=716;; (*ITAG) Solyc08g066580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52512630-52530812 transcript_region:SL2.40ch08:52512630..52530812- functional_description:"Nuclear pore complex protein Nup85 (AHRD V1 **-- NUP85_MOUSE); contains Interpro domain(s) IPR011502 Nucleoporin, Nup85-like "; NbS00011991g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|0.33|0.5|4|84|98; (*SWP) sp|Q8L8T2|GRXC1_ARATH (e_value=2e-37) Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2;; (*TAIR) AT5G63030.1 (e_value=2e-38) | Symbols: | Thioredoxin superfamily protein | chr5:25286352-25287517 FORWARD LENGTH=125;; (*ITAG) Solyc03g112770.2.1 (e_value=1e-57) genomic_reference:SL2.40ch03 gene_region:57165498-57168926 transcript_region:SL2.40ch03:57165498..57168926+ go_terms:GO:0015038 functional_description:"Cytoplasmic glutaredoxin thioltransferase glutathione-dependent disulfide oxidoreductase (AHRD V1 **** C4R934_PICPG); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0015038 NbS00010428g0003.1 protein AED:0.21 eAED:0.23 QI:0|0|0.33|1|0.5|0.33|3|562|635; (*SWP) sp|P56820|EIF3D_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1;; (*TAIR) AT4G20980.4 (e_value=0.0) | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591;; (*ITAG) Solyc02g078120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37474003-37475736 transcript_region:SL2.40ch02:37474003..37475736- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 7 (AHRD V1 ***- Q9FKV6_ARATH); contains Interpro domain(s) IPR007783 Eukaryotic translation initiation factor 3, subunit 7 "; GO:0005515 NbS00056894g0004.1 protein AED:0.08 eAED:0.08 QI:333|0.91|0.92|1|0.75|0.61|13|0|1684; (*TAIR) AT2G39580.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr2:16510540-16516948 FORWARD LENGTH=1577;; (*ITAG) Solyc04g011380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3850974-3863049 transcript_region:SL2.40ch04:3850974..3863049- go_terms:GO:0008152 functional_description:"Binding protein (AHRD V1 ***- D7LD65_ARALY); contains Interpro domain(s) IPR019607 Putative zinc-finger domain "; GO:0008152 NbS00056894g0017.1 protein AED:0.23 eAED:0.23 QI:12|1|1|1|1|1|11|178|314; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=8e-144) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G46440.2 (e_value=0.0) | Symbols: UXS5 | UDP-XYL synthase 5 | chr3:17089268-17091611 REVERSE LENGTH=341;; (*ITAG) Solyc04g011400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3868800-3872796 transcript_region:SL2.40ch04:3868800..3872796- go_terms:GO:0048040 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **-* D5RML8_9PROT); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0048040 NbS00056894g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|136; (*SWP) sp|Q9FVI1|ADF2_PETHY (e_value=2e-93) Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1;; (*TAIR) AT5G59890.1 (e_value=3e-82) | Symbols: ADF4, ATADF4 | actin depolymerizing factor 4 | chr5:24122545-24123596 FORWARD LENGTH=139;; (*ITAG) Solyc04g011370.2.1 (e_value=5e-96) genomic_reference:SL2.40ch04 gene_region:3845935-3848508 transcript_region:SL2.40ch04:3845935..3848508+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 2 (AHRD V1 **** Q541R7_PETHY); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00056894g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|103; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00033790g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|79; (*TAIR) AT4G21192.2 (e_value=3e-32) | Symbols: | Cytochrome c oxidase biogenesis protein Cmc1-like | chr4:11294563-11295192 FORWARD LENGTH=80;; (*ITAG) Solyc01g103190.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:83616111-83617335 transcript_region:SL2.40ch01:83616111..83617335+ go_terms:GO:0005507 functional_description:"COX assembly mitochondrial protein homolog (AHRD V1 ***- COXAM_SCHPO); contains Interpro domain(s) IPR013892 Cytochrome c oxidase biogenesis protein Cmc1-like "; GO:0005507 NbS00033790g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|199; (*ITAG) Solyc11g065520.1.1 (e_value=8e-43) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00010018g0004.1 protein AED:0.26 eAED:0.26 QI:255|0.9|0.81|1|0.8|0.72|11|0|472; (*SWP) sp|Q9FL69|AGD5_ARATH (e_value=1e-146) Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1;; (*TAIR) AT5G54310.1 (e_value=1e-147) | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483;; (*ITAG) Solyc07g063550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63221555-63228516 transcript_region:SL2.40ch07:63221555..63228516+ go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbC25818722g0001.1 protein AED:0.10 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|276; (*SWP) sp|O65499|ZAT3_ARATH (e_value=1e-11) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT2G26940.1 (e_value=3e-17) | Symbols: | C2H2-type zinc finger family protein | chr2:11496518-11497378 REVERSE LENGTH=286;; (*ITAG) Solyc07g066160.1.1 (e_value=1e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64873053-64874048 transcript_region:SL2.40ch07:64873053..64874048- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MD22_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00002548g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|1|1|3|353|470; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=0.0) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=0.0) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc06g065850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37670367-37673877 transcript_region:SL2.40ch06:37670367..37673877- functional_description:"Flotillin domain protein (AHRD V1 ***- B6Q909_PENMQ); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00002548g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.7|0.45|1|0.7|0.54|11|0|1195; (*SWP) sp|Q32PH0|TPPC9_BOVIN (e_value=5e-34) Trafficking protein particle complex subunit 9 OS=Bos taurus GN=TRAPPC9 PE=2 SV=1;; (*TAIR) AT5G11040.1 (e_value=0.0) | Symbols: TRS120, AtTRS120 | TRS120 | chr5:3495332-3500610 FORWARD LENGTH=1186;; (*ITAG) Solyc06g065840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37655591-37669694 transcript_region:SL2.40ch06:37655591..37669694+ functional_description:"Trafficking protein particle complex subunit 9 (AHRD V1 **-- TPPC9_BOVIN); contains Interpro domain(s) IPR013935 Transport protein Trs120 "; NbS00002548g0011.1 protein AED:0.20 eAED:0.24 QI:0|0.14|0.12|1|0.42|0.5|8|0|377; (*TAIR) AT2G25270.1 (e_value=1e-44) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10759779-10762358 FORWARD LENGTH=545;; (*ITAG) Solyc08g041710.2.1 (e_value=7e-70) genomic_reference:SL2.40ch08 gene_region:26805588-26812631 transcript_region:SL2.40ch08:26805588..26812631- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0014.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc00g020010.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806787-11807014 transcript_region:SL2.40ch00:11806787..11807014- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0035.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|154; (*ITAG) Solyc00g052540.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13768660-13769331 transcript_region:SL2.40ch00:13768660..13769331- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0006.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc11g063480.1.1 (e_value=8e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0027.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc00g020000.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806347-11806520 transcript_region:SL2.40ch00:11806347..11806520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0029.1 protein AED:0.35 eAED:0.44 QI:0|0|0|1|1|1|2|0|130; (*ITAG) Solyc00g020020.2.1 (e_value=7e-42) genomic_reference:SL2.40ch00 gene_region:11807384-11808467 transcript_region:SL2.40ch00:11807384..11808467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0040.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.33|0|0.33|3|0|140; (*ITAG) Solyc11g063480.1.1 (e_value=8e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0050.1 protein AED:0.46 eAED:1.00 QI:0|0|0|0.4|0|0.2|5|0|181 NbS00001338g0048.1 protein AED:0.23 eAED:0.30 QI:0|0|0|1|0|0|4|0|371; (*ITAG) Solyc12g036640.1.1 (e_value=8e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:31779764-31782130 transcript_region:SL2.40ch12:31779764..31782130- functional_description:"Unknown Protein (AHRD V1)"; NbS00001338g0043.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|0|0|3|0|299; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-74) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*TAIR) AT2G07715.1 (e_value=6e-97) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:3411180-3412694 FORWARD LENGTH=389;; (*ITAG) Solyc00g022110.2.1 (e_value=7e-111) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00001338g0047.1 protein AED:0.28 eAED:0.59 QI:0|0|0|1|0|0|2|0|131; (*SWP) sp|P93312|YMF16_ARATH (e_value=3e-26) Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2;; (*ITAG) ATMG00570.1 (e_value=3e-32) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc05g023960.1.1 (e_value=6e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:30153755-30154048 transcript_region:SL2.40ch05:30153755..30154048+ functional_description:"Transport membrane protein (Fragment) (AHRD V1 **-- D5I3F6_CUCPE)"; NbS00001338g0044.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|0|0|2|0|115; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-34) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=1e-35) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349; NbS00001338g0046.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|92; (*SWP) sp|P93312|YMF16_ARATH (e_value=5e-33) Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2;; (*ITAG) ATMG00570.1 (e_value=2e-38) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc10g062070.1.1 (e_value=6e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54630924-54631199 transcript_region:SL2.40ch10:54630924..54631199+ functional_description:"Transport membrane protein (Fragment) (AHRD V1 **-- D5I3F6_CUCPE)"; NbS00001338g0045.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|0|0|2|0|82 NbS00001338g0041.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|66; (*ITAG) Solyc11g063490.1.1 (e_value=3e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:46701784-46701960 transcript_region:SL2.40ch11:46701784..46701960- functional_description:"Unknown Protein (AHRD V1)"; NbS00011268g0008.1 protein AED:0.26 eAED:0.26 QI:115|1|1|1|0.66|0.75|4|328|88; (*SWP) sp|Q5R628|LSM5_PONAB (e_value=1e-42) U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3;; (*TAIR) AT5G48870.1 (e_value=4e-54) | Symbols: SAD1 | Small nuclear ribonucleoprotein family protein | chr5:19813407-19814362 FORWARD LENGTH=88;; (*ITAG) Solyc09g091500.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:66113493-66116232 transcript_region:SL2.40ch09:66113493..66116232- go_terms:GO:0005515,GO:0003723 functional_description:"U6 snRNA-associated Sm-like protein LSm5 (AHRD V1 ***- C1BWV8_ESOLU); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0003723 NbS00011268g0012.1 protein AED:0.32 eAED:0.33 QI:176|0.75|0.88|1|0.62|0.66|9|232|729; (*SWP) sp|Q9M2S6|SDIR1_ARATH (e_value=5e-17) E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1;; (*TAIR) AT1G04790.1 (e_value=6e-49) | Symbols: | RING/U-box superfamily protein | chr1:1345469-1348143 FORWARD LENGTH=634;; (*ITAG) Solyc09g091480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66095886-66102841 transcript_region:SL2.40ch09:66095886..66102841- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011268g0007.1 protein AED:0.28 eAED:0.28 QI:255|1|0.92|1|1|1|14|329|464; (*SWP) sp|Q56WD9|THIK2_ARATH (e_value=0.0) 3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2;; (*TAIR) AT2G33150.1 (e_value=0.0) | Symbols: PKT3, PED1, KAT2 | peroxisomal 3-ketoacyl-CoA thiolase 3 | chr2:14047814-14050983 REVERSE LENGTH=462;; (*ITAG) Solyc09g091470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66090647-66095664 transcript_region:SL2.40ch09:66090647..66095664+ go_terms:GO:0003985 functional_description:"3-ketoacyl CoA thiolase 2 (AHRD V1 **** C8YNG7_PETHY); contains Interpro domain(s) IPR002155 Thiolase "; GO:0003985 NbS00025221g0005.1 protein AED:0.16 eAED:0.17 QI:218|0.83|0.71|1|0.66|0.57|7|0|590; (*SWP) sp|O23492|INT4_ARATH (e_value=0.0) Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1;; (*TAIR) AT4G16480.1 (e_value=0.0) | Symbols: ATINT4, INT4 | inositol transporter 4 | chr4:9291246-9293083 FORWARD LENGTH=582;; (*ITAG) Solyc11g012450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5285131-5287963 transcript_region:SL2.40ch11:5285131..5287963- go_terms:GO:0016020,GO:0016021 functional_description:"Predicted transporter (AHRD V1 ***- Q2TZC8_ASPOR); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00052943g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.87|0.77|1|1|1|9|0|915; (*SWP) sp|Q3UQU0|BRD9_MOUSE (e_value=2e-18) Bromodomain-containing protein 9 OS=Mus musculus GN=Brd9 PE=2 SV=1;; (*TAIR) AT5G55040.2 (e_value=0.0) | Symbols: | DNA-binding bromodomain-containing protein | chr5:22327727-22331703 REVERSE LENGTH=916;; (*ITAG) Solyc07g064700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63956571-63962837 transcript_region:SL2.40ch07:63956571..63962837- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *-** D7KJ43_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00052943g0008.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|0|2|0|70; (*SWP) sp|Q8LEM4|ATG8A_ARATH (e_value=1e-43) Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2;; (*TAIR) AT4G21980.1 (e_value=8e-45) | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily protein | chr4:11655913-11656809 FORWARD LENGTH=122;; (*ITAG) Solyc10g006270.2.1 (e_value=1e-47) genomic_reference:SL2.40ch10 gene_region:937587-940551 transcript_region:SL2.40ch10:937587..940551- go_terms:GO:0048487 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0048487 NbS00046616g0009.1 protein AED:0.11 eAED:0.11 QI:145|0.95|0.95|1|0.69|0.66|24|418|770; (*SWP) sp|Q54NM9|STT3_DICDI (e_value=0.0) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3 OS=Dictyostelium discoideum GN=stt3 PE=3 SV=1;; (*TAIR) AT5G19690.1 (e_value=0.0) | Symbols: STT3A | staurosporin and temperature sensitive 3-like A | chr5:6652649-6658214 FORWARD LENGTH=779;; (*ITAG) Solyc12g008360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1785951-1798278 transcript_region:SL2.40ch12:1785951..1798278- go_terms:GO:0016020 functional_description:"Oligosaccharyl transferase STT3 subunit family protein (AHRD V1 ***- Q23H40_TETTH); contains Interpro domain(s) IPR003674 Oligosaccharyl transferase, STT3 subunit "; GO:0016020 NbS00046616g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|376; (*SWP) sp|Q13573|SNW1_HUMAN (e_value=1e-60) SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1;; (*TAIR) AT1G77180.3 (e_value=6e-99) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=511;; (*ITAG) Solyc12g008370.1.1 (e_value=6e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00046616g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|183; (*SWP) sp|P39736|BX42_DROME (e_value=7e-40) Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1 SV=1;; (*TAIR) AT1G77180.2 (e_value=2e-78) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613;; (*ITAG) Solyc12g008370.1.1 (e_value=2e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00046616g0007.1 protein AED:0.46 eAED:0.85 QI:0|0|0|1|1|1|2|0|83; (*TAIR) AT1G77180.2 (e_value=3e-15) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613; NbS00001957g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.55|1|1|1|9|0|442; (*SWP) sp|Q8RWE8|GGAP1_ARATH (e_value=0.0) GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1;; (*TAIR) AT4G26850.1 (e_value=0.0) | Symbols: VTC2 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase | chr4:13499262-13501145 REVERSE LENGTH=442;; (*ITAG) Solyc06g073320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41566941-41570177 transcript_region:SL2.40ch06:41566941..41570177+ go_terms:GO:0080046,GO:0010475,GO:0080048 functional_description:"GDP-L-galactose phosphorylase 1"; GO:0080046,GO:0010475,GO:0080048 NbS00002938g0013.1 protein AED:0.18 eAED:0.22 QI:0|0.8|0.75|0.87|0.8|0.87|16|0|937; (*SWP) sp|P42285|SK2L2_HUMAN (e_value=0.0) Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3;; (*TAIR) AT2G06990.1 (e_value=0.0) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995;; (*ITAG) Solyc12g017860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7587367-7602793 transcript_region:SL2.40ch12:7587367..7602793- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00002938g0012.1 protein AED:0.12 eAED:0.12 QI:238|1|0.5|1|0|0.5|2|0|222; (*TAIR) AT5G20700.1 (e_value=2e-19) | Symbols: | Protein of unknown function (DUF581) | chr5:7006178-7007003 REVERSE LENGTH=248;; (*ITAG) Solyc12g017850.1.1 (e_value=1e-73) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:7567695-7570822 transcript_region:SL2.40ch12:7567695..7570822+ functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00048388g0009.1 protein AED:0.15 eAED:0.15 QI:273|0.6|0.83|1|0.6|0.66|6|399|297; (*SWP) sp|Q9M9W9|P2C34_ARATH (e_value=1e-106) Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1;; (*TAIR) AT3G05640.2 (e_value=8e-108) | Symbols: | Protein phosphatase 2C family protein | chr3:1640610-1642227 REVERSE LENGTH=358;; (*ITAG) Solyc01g100040.2.1 (e_value=3e-122) genomic_reference:SL2.40ch01 gene_region:81872312-81875388 transcript_region:SL2.40ch01:81872312..81875388- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00048388g0011.1 protein AED:0.08 eAED:0.08 QI:0|1|0.8|1|0.5|0.6|5|0|137; (*TAIR) AT3G05625.1 (e_value=1e-73) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1632408-1633912 FORWARD LENGTH=257;; (*ITAG) Solyc10g044710.1.1 (e_value=2e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:22992778-22995517 transcript_region:SL2.40ch10:22992778..22995517- go_terms:GO:0005975,GO:0005488 functional_description:"TPR repeat (AHRD V1 ***- Q2HW44_MEDTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005975,GO:0005488 NbS00033443g0002.1 protein AED:0.73 eAED:0.73 QI:8|0|0|0.33|1|0.66|3|0|102; (*ITAG) Solyc12g013500.1.1 (e_value=8e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:4377188-4378488 transcript_region:SL2.40ch12:4377188..4378488- functional_description:"Unknown Protein (AHRD V1)"; NbS00035003g0001.1 protein AED:0.45 eAED:0.45 QI:60|1|0.5|1|1|1|2|0|133; (*SWP) sp|Q9C681|H2A1_ARATH (e_value=1e-57) Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1;; (*TAIR) AT1G51060.1 (e_value=7e-59) | Symbols: HTA10 | histone H2A 10 | chr1:18926948-18927443 FORWARD LENGTH=132;; (*ITAG) Solyc10g006560.2.1 (e_value=1e-61) genomic_reference:SL2.40ch10 gene_region:1118420-1120843 transcript_region:SL2.40ch10:1118420..1120843- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- A9PCS9_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00035003g0004.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.33|1|1|3|0|81 NbS00060772g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|3|561|194; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-18) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G41350.1 (e_value=3e-38) | Symbols: | RING/U-box superfamily protein | chr5:16542026-16543092 REVERSE LENGTH=212;; (*ITAG) Solyc08g081300.2.1 (e_value=5e-95) genomic_reference:SL2.40ch08 gene_region:61530472-61532584 transcript_region:SL2.40ch08:61530472..61532584- go_terms:GO:0008270 functional_description:"Ring finger protein 126 (AHRD V1 *-*- Q28DW8_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014565g0002.1 protein AED:0.00 eAED:0.00 QI:398|1|1|1|1|1|2|72|44 NbS00008166g0023.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.5|0.75|0.33|0|4|473|80; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=2e-29) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=5e-29) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00008166g0024.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|1001; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=0.0) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=0.0) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc02g089090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00008166g0020.1 protein AED:0.17 eAED:0.17 QI:15|1|1|1|1|1|2|373|112; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=7e-29) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=6e-30) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc05g012160.2.1 (e_value=3e-24) genomic_reference:SL2.40ch05 gene_region:5356573-5358187 transcript_region:SL2.40ch05:5356573..5358187- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00008166g0021.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|0|0.5|2|0|340; (*ITAG) Solyc03g044360.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00008166g0027.1 protein AED:0.20 eAED:0.24 QI:0|0.8|0.83|1|0.8|0.66|6|517|361; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=1e-97) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT3G29770.1 (e_value=7e-158) | Symbols: ATMES11, MES11 | methyl esterase 11 | chr3:11648471-11650565 FORWARD LENGTH=390;; (*ITAG) Solyc02g089060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45538678-45544081 transcript_region:SL2.40ch02:45538678..45544081+ go_terms:GO:0080031,GO:0080030 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00008166g0001.1 protein AED:0.03 eAED:0.58 QI:0|-1|0|1|-1|1|1|0|361; (*SWP) sp|Q9FID5|Y5393_ARATH (e_value=8e-75) Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1;; (*TAIR) AT5G39030.1 (e_value=6e-76) | Symbols: | Protein kinase superfamily protein | chr5:15620066-15622486 FORWARD LENGTH=806;; (*ITAG) Solyc02g089090.2.1 (e_value=9e-141) genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00008166g0017.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|127 NbS00034450g0001.1 protein AED:0.18 eAED:0.18 QI:279|0.5|0.66|1|0|0.33|3|0|373; (*SWP) sp|Q9M9F9|ICR4_ARATH (e_value=3e-39) Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=2;; (*TAIR) AT1G78430.1 (e_value=2e-40) | Symbols: RIP2 | ROP interactive partner 2 | chr1:29509605-29510679 FORWARD LENGTH=324;; (*ITAG) Solyc07g056650.2.1 (e_value=3e-131) genomic_reference:SL2.40ch07 gene_region:61779288-61780829 transcript_region:SL2.40ch07:61779288..61780829+ functional_description:"Interactor of constitutive active ROPs 1 (AHRD V1 ***- ICR1_ARATH)"; NbS00034450g0016.1 protein AED:0.29 eAED:0.30 QI:0|0.33|0.25|1|0.66|0.5|4|0|251; (*ITAG) Solyc01g073870.2.1 (e_value=4e-51) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00034450g0021.1 protein AED:0.33 eAED:0.34 QI:0|1|0.87|1|0.71|0.75|8|0|421; (*SWP) sp|A5DQJ8|SIP5_PICGU (e_value=2e-12) Protein SIP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SIP5 PE=3 SV=2;; (*TAIR) AT1G78420.2 (e_value=1e-121) | Symbols: | RING/U-box superfamily protein | chr1:29505278-29507272 FORWARD LENGTH=401;; (*ITAG) Solyc07g056630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61765246-61772442 transcript_region:SL2.40ch07:61765246..61772442+ go_terms:GO:0005524,GO:0008270 functional_description:"Protein sip5 (AHRD V1 *--- C8VM34_EMENI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005524,GO:0008270 NbS00000569g0005.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|205; (*SWP) sp|P73068|RUBR_SYNY3 (e_value=6e-17) Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub PE=3 SV=1;; (*TAIR) AT1G54500.1 (e_value=2e-54) | Symbols: | Rubredoxin-like superfamily protein | chr1:20357084-20357671 REVERSE LENGTH=195;; (*ITAG) Solyc01g097910.2.1 (e_value=4e-82) genomic_reference:SL2.40ch01 gene_region:80353631-80354713 transcript_region:SL2.40ch01:80353631..80354713+ go_terms:GO:0046872 functional_description:"Rubredoxin family protein (AHRD V1 *-*- D7KP11_ARALY); contains Interpro domain(s) IPR004039 Rubredoxin-type Fe(Cys)4 protein "; GO:0046872 NbS00000569g0017.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.75|1|0.33|0.75|4|411|220; (*SWP) sp|O34598|GUAD_BACSU (e_value=1e-30) Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1;; (*TAIR) AT5G28050.1 (e_value=8e-88) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045755 REVERSE LENGTH=185;; (*ITAG) Solyc01g097880.2.1 (e_value=4e-88) genomic_reference:SL2.40ch01 gene_region:80335950-80341370 transcript_region:SL2.40ch01:80335950..80341370+ go_terms:GO:0016787,GO:0003824 functional_description:"Deaminase (AHRD V1 *-*- D6B5U0_9ACTO); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0016787,GO:0003824 NbS00000569g0006.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0.54|0.72|0.9|0.81|11|196|229; (*SWP) sp|Q00834|CYSK_SPIOL (e_value=4e-37) Cysteine synthase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G59760.1 (e_value=2e-34) | Symbols: OASC, ATCS-C | O-acetylserine (thiol) lyase isoform C | chr3:22072119-22075345 REVERSE LENGTH=433;; (*ITAG) Solyc01g097920.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:80358782-80365636 transcript_region:SL2.40ch01:80358782..80365636+ go_terms:GO:0008152,GO:0006535 functional_description:"Cysteine synthase (AHRD V1 ***- Q9FSF5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0008152,GO:0006535 NbS00000569g0019.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|417; (*TAIR) AT3G04930.2 (e_value=3e-44) | Symbols: | DNA-binding storekeeper protein-related transcriptional regulator | chr3:1363029-1364651 FORWARD LENGTH=396;; (*ITAG) Solyc02g083750.1.1 (e_value=4e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41617026-41618291 transcript_region:SL2.40ch02:41617026..41618291- go_terms:GO:0030528 functional_description:"Transcription regulator (AHRD V1 *--* D7L304_ARALY); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; GO:0030528 NbS00000569g0016.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|1|3|0|238; (*SWP) sp|P09444|LEA34_GOSHI (e_value=4e-35) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT5G27980.1 (e_value=4e-41) | Symbols: | Seed maturation protein | chr5:10015883-10016676 REVERSE LENGTH=192;; (*ITAG) Solyc01g097960.2.1 (e_value=1e-67) genomic_reference:SL2.40ch01 gene_region:80376043-80378272 transcript_region:SL2.40ch01:80376043..80378272- functional_description:"Late embryogenesis abundant protein D-34 (AHRD V1 **-- B6UH67_MAIZE); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbS00026437g0001.1 protein AED:0.23 eAED:0.23 QI:403|1|0.83|1|0.8|0.66|6|275|275; (*SWP) sp|Q42440|PAI1_ARATH (e_value=2e-102) N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PAI1 PE=1 SV=1;; (*TAIR) AT1G07780.5 (e_value=1e-103) | Symbols: PAI1 | phosphoribosylanthranilate isomerase 1 | chr1:2410352-2411833 REVERSE LENGTH=275;; (*ITAG) Solyc06g051410.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:31254720-31257535 transcript_region:SL2.40ch06:31254720..31257535- go_terms:GO:0008881,GO:0004640 functional_description:"N-(5&apos-phosphoribosyl)anthranilate isomerase (AHRD V1 **** B9SQM9_RICCO); contains Interpro domain(s) IPR011060 Ribulose-phosphate binding barrel "; GO:0008881,GO:0004640 NbS00026437g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.62|0.55|1|0.75|0.66|9|0|448; (*SWP) sp|P48620|FAD3C_SESIN (e_value=0.0) Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=0.0) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g051400.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31251815-31254230 transcript_region:SL2.40ch06:31251815..31254230+ go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** Q7X7I9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00004793g0021.1 protein AED:0.17 eAED:0.17 QI:248|0.62|0.66|1|0.87|0.88|9|0|748; (*TAIR) AT1G29370.1 (e_value=6e-46) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc03g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:525181-537611 transcript_region:SL2.40ch03:525181..537611+ functional_description:"Genomic DNA chromosome 5 P1 clone MPL12 (AHRD V1 *--- Q9FL24_ARATH); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00004793g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|4|0|257; (*SWP) sp|P27495|CB24_TOBAC (e_value=6e-107) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=4e-94) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g071030.1.1 (e_value=2e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:35103817-35104614 transcript_region:SL2.40ch02:35103817..35104614+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00004793g0004.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|222; (*SWP) sp|P27495|CB24_TOBAC (e_value=3e-136) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=4e-118) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=2e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00004793g0016.1 protein AED:0.15 eAED:0.27 QI:0|0|0|1|1|1|2|0|286; (*SWP) sp|P27492|CB21_TOBAC (e_value=9e-155) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-137) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=7e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00004793g0011.1 protein AED:0.07 eAED:0.16 QI:0|0|0|1|1|1|4|0|268; (*SWP) sp|P27492|CB21_TOBAC (e_value=6e-121) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=1e-106) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=2e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00004793g0007.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|749; (*SWP) sp|Q93YF5|SUVH1_TOBAC (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 OS=Nicotiana tabacum GN=SUVH1 PE=1 SV=1;; (*TAIR) AT1G73100.1 (e_value=0.0) | Symbols: SUVH3, SDG19 | SU(VAR)3-9 homolog 3 | chr1:27491970-27493979 FORWARD LENGTH=669;; (*ITAG) Solyc10g077070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59300620-59302764 transcript_region:SL2.40ch10:59300620..59302764- go_terms:GO:0042054 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-** B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0042054 NbS00004793g0017.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|219; (*SWP) sp|P27495|CB24_TOBAC (e_value=3e-113) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT2G34430.1 (e_value=3e-105) | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266;; (*ITAG) Solyc02g071000.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35097630-35098427 transcript_region:SL2.40ch02:35097630..35098427+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41425_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00004793g0001.1 protein AED:0.33 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|117; (*SWP) sp|P27492|CB21_TOBAC (e_value=1e-73) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29920.1 (e_value=6e-66) | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10475089-10475892 REVERSE LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00043379g0003.1 protein AED:0.19 eAED:0.20 QI:90|1|0.66|1|1|1|3|0|350; (*SWP) sp|Q9M2Q6|SPL15_ARATH (e_value=7e-46) Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1;; (*TAIR) AT3G57920.1 (e_value=5e-47) | Symbols: SPL15 | squamosa promoter binding protein-like 15 | chr3:21444450-21445852 REVERSE LENGTH=354;; (*ITAG) Solyc10g078700.1.1 (e_value=5e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59754038-59758728 transcript_region:SL2.40ch10:59754038..59758728- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B1_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbC25660343g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|71; (*ITAG) Solyc04g016160.2.1 (e_value=5e-15) genomic_reference:SL2.40ch04 gene_region:6902286-6909181 transcript_region:SL2.40ch04:6902286..6909181- functional_description:"F-box/LRR-repeat protein At5g63520 (AHRD V1 ***- D7MPP7_ARALY); contains Interpro domain(s) IPR019494 FIST C domain "; NbS00004900g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|217; (*SWP) sp|Q69XQ3|C3H44_ORYSJ (e_value=2e-55) Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=5e-44) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc01g073940.2.1 (e_value=3e-109) genomic_reference:SL2.40ch01 gene_region:70522512-70526312 transcript_region:SL2.40ch01:70522512..70526312- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003700 NbS00004900g0008.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|3|0|383; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=2e-26) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50120.1 (e_value=2e-44) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc10g079530.1.1 (e_value=7e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60385164-60386750 transcript_region:SL2.40ch10:60385164..60386750+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00004900g0016.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.66|0.5|0.66|3|0|416; (*SWP) sp|Q99942|RNF5_HUMAN (e_value=5e-19) E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1;; (*TAIR) AT2G44410.1 (e_value=2e-46) | Symbols: | RING/U-box superfamily protein | chr2:18328873-18330114 FORWARD LENGTH=413;; (*ITAG) Solyc06g051230.2.1 (e_value=6e-107) genomic_reference:SL2.40ch06 gene_region:30924444-30926046 transcript_region:SL2.40ch06:30924444..30926046+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TI40_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00004900g0014.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|198; (*ITAG) Solyc08g044310.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00004900g0015.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.75|0|0|4|0|143; (*ITAG) Solyc12g062880.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00027008g0102.1 protein AED:0.07 eAED:0.07 QI:212|0|0.5|1|0|0.5|2|959|337 NbS00034797g0008.1 protein AED:0.04 eAED:0.05 QI:0|0.25|0|1|0.25|0.2|5|0|944; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=0.0) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc07g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00034797g0006.1 protein AED:0.40 eAED:0.56 QI:0|0|0|1|1|1|5|0|179 NbS00039860g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|174; (*SWP) sp|Q9M8T3|Y2910_ARATH (e_value=9e-48) Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2;; (*TAIR) AT3G02910.1 (e_value=7e-49) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr3:649986-650549 FORWARD LENGTH=187;; (*ITAG) Solyc04g056330.1.1 (e_value=3e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:53219835-53220350 transcript_region:SL2.40ch04:53219835..53220350- go_terms:GO:0008307,GO:0003839 functional_description:"Protein containing AIG2-like domain (AHRD V1 *-*- D9PJU0_9ZZZZ); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like "; GO:0008307,GO:0003839 NbS00000211g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|659; (*TAIR) AT5G66200.1 (e_value=0.0) | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453648-26455603 REVERSE LENGTH=651;; (*ITAG) Solyc02g083820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00000211g0112.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.8|1|0.88|0.8|10|0|389 NbS00000211g0105.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|248 NbS00000211g0111.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|0|0.5|2|0|104 NbS00016145g0015.1 protein AED:0.08 eAED:0.08 QI:16|1|1|1|1|1|2|757|100; (*TAIR) AT4G26810.2 (e_value=1e-55) | Symbols: | SWIB/MDM2 domain superfamily protein | chr4:13492247-13492649 REVERSE LENGTH=106;; (*ITAG) Solyc07g064920.2.1 (e_value=7e-67) genomic_reference:SL2.40ch07 gene_region:64113931-64115700 transcript_region:SL2.40ch07:64113931..64115700+ functional_description:"SWIb domain-containing protein (AHRD V1 ***- Q1PCH7_SOLCH); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00016145g0019.1 protein AED:0.18 eAED:0.18 QI:190|0.93|1|1|0.87|0.88|17|232|567; (*SWP) sp|Q5E9R3|EHD1_BOVIN (e_value=2e-153) EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1;; (*TAIR) AT3G20290.2 (e_value=0.0) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc07g064910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64106940-64112207 transcript_region:SL2.40ch07:64106940..64112207+ go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **** B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00016145g0016.1 protein AED:0.31 eAED:0.31 QI:184|0.72|0.68|0.94|0.83|0.84|19|276|846; (*SWP) sp|Q8S9L5|TIG_ARATH (e_value=0.0) Trigger factor-like protein TIG OS=Arabidopsis thaliana GN=TIG PE=2 SV=1;; (*TAIR) AT5G55220.1 (e_value=0.0) | Symbols: | trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD LENGTH=547;; (*ITAG) Solyc07g064950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64125602-64131741 transcript_region:SL2.40ch07:64125602..64131741+ go_terms:GO:0015031,GO:0006457 functional_description:"Trigger factor-like protein (AHRD V1 ***- Q9FLP1_ARATH); contains Interpro domain(s) IPR005215 Trigger factor "; GO:0015031,GO:0006457 NbS00016145g0024.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|0.66|0.75|4|0|265; (*SWP) sp|O23166|TR164_ARATH (e_value=2e-98) Thioredoxin-like protein HCF164, chloroplastic OS=Arabidopsis thaliana GN=HCF164 PE=2 SV=2;; (*TAIR) AT4G37200.1 (e_value=2e-99) | Symbols: HCF164 | Thioredoxin superfamily protein | chr4:17509836-17511230 REVERSE LENGTH=261;; (*ITAG) Solyc07g064940.2.1 (e_value=3e-155) genomic_reference:SL2.40ch07 gene_region:64121920-64124847 transcript_region:SL2.40ch07:64121920..64124847- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 *-*- Q1EPD8_MUSAC); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0016671 NbS00016145g0025.1 protein AED:0.21 eAED:0.27 QI:48|0.57|0.25|1|0.28|0.5|8|0|316; (*SWP) sp|O04940|CDS1_SOLTU (e_value=6e-124) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G26770.1 (e_value=1e-126) | Symbols: | Phosphatidate cytidylyltransferase family protein | chr4:13482580-13484697 FORWARD LENGTH=471;; (*ITAG) Solyc07g064960.1.1 (e_value=3e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64131970-64135830 transcript_region:SL2.40ch07:64131970..64135830- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B8A9S4_ORYSI); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00017090g0008.1 protein AED:0.14 eAED:0.14 QI:209|0.84|0.92|1|1|1|14|574|609; (*SWP) sp|Q38931|FKB62_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2;; (*TAIR) AT3G25230.1 (e_value=0.0) | Symbols: ROF1, ATFKBP62, FKBP62 | rotamase FKBP 1 | chr3:9188257-9191137 FORWARD LENGTH=551;; (*ITAG) Solyc06g083190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45004847-45008910 transcript_region:SL2.40ch06:45004847..45008910- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00017090g0001.1 protein AED:0.25 eAED:0.25 QI:157|1|0.6|1|1|1|5|0|224; (*SWP) sp|Q08069|RS8_MAIZE (e_value=5e-111) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=6e-103) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc06g083180.2.1 (e_value=3e-108) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00012514g0001.1 protein AED:0.14 eAED:0.14 QI:144|1|1|1|0.62|0.44|9|516|245; (*SWP) sp|Q9LHP1|RL74_ARATH (e_value=8e-152) 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1;; (*TAIR) AT3G13580.1 (e_value=6e-153) | Symbols: | Ribosomal protein L30/L7 family protein | chr3:4433809-4435109 FORWARD LENGTH=244;; (*ITAG) Solyc08g075090.2.1 (e_value=1e-166) genomic_reference:SL2.40ch08 gene_region:56410976-56415969 transcript_region:SL2.40ch08:56410976..56415969- go_terms:GO:0005840,GO:0015934,GO:0005634,GO:0045449 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0005840,GO:0015934,GO:0005634,GO:0045449 NbS00012514g0008.1 protein AED:0.03 eAED:0.03 QI:338|0.6|0.83|1|0.6|0.5|6|444|640; (*TAIR) AT5G45290.1 (e_value=7e-57) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=545;; (*ITAG) Solyc08g075080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56402802-56409281 transcript_region:SL2.40ch08:56402802..56409281+ go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010881g0013.1 protein AED:0.15 eAED:0.15 QI:82|0.87|0.77|1|0.87|0.88|9|280|472; (*SWP) sp|P49317|CATA3_NICPL (e_value=0.0) Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN=CAT3 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc04g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63696861-63701335 transcript_region:SL2.40ch04:63696861..63701335+ go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** Q8L7J7_CAPAN); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00010881g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|1|1|3|0|178; (*SWP) sp|P55307|CATA1_HORVU (e_value=2e-17) Catalase isozyme 1 OS=Hordeum vulgare GN=CAT1 PE=2 SV=1;; (*ITAG) Solyc01g100640.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:82373864-82375340 transcript_region:SL2.40ch01:82373864..82375340+ go_terms:GO:0055114 functional_description:"Catalase (AHRD V1 ***- O24511_TOBAC); contains Interpro domain(s) IPR002226 Catalase "; GO:0055114 NbS00010881g0010.1 protein AED:0.11 eAED:0.17 QI:0|0|0|1|0|0|2|0|317; (*SWP) sp|Q9LPV9|LWD1_ARATH (e_value=0.0) WD repeat-containing protein LWD1 OS=Arabidopsis thaliana GN=LWD1 PE=2 SV=1;; (*TAIR) AT1G12910.1 (e_value=0.0) | Symbols: ATAN11, LWD1 | Transducin/WD40 repeat-like superfamily protein | chr1:4395114-4396154 REVERSE LENGTH=346;; (*ITAG) Solyc04g082470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:63702623-63703666 transcript_region:SL2.40ch04:63702623..63703666+ functional_description:"WD repeat 2 (AHRD V1 **-- Q19N38_VITVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00011788g0002.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|112; (*TAIR) AT1G21500.1 (e_value=5e-14) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7530047-7530954 REVERSE LENGTH=126;; (*ITAG) Solyc12g019550.1.1 (e_value=6e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:10628080-10628914 transcript_region:SL2.40ch12:10628080..10628914+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011788g0006.1 protein AED:0.31 eAED:0.80 QI:0|1|0|1|1|1|2|0|215; (*TAIR) AT2G16270.1 (e_value=3e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16630.1); Has 1844 Blast hits to 1256 proteins in 271 species: Archae - 6; Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91; Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink). | chr2:7045744-7048313 REVERSE LENGTH=759;; (*ITAG) Solyc01g106750.1.1 (e_value=9e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86252686-86255230 transcript_region:SL2.40ch01:86252686..86255230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036481g0002.1 protein AED:0.03 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|252; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=2e-11) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=2e-12) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc12g036320.1.1 (e_value=5e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:30752072-30754246 transcript_region:SL2.40ch12:30752072..30754246+ functional_description:"Serine/threonine protein kinase B (Fragment) (AHRD V1 *-*- B1AEX8_POPTN)"; NbS00013204g0007.1 protein AED:0.14 eAED:0.14 QI:231|1|0.8|1|0.75|1|5|437|342; (*SWP) sp|Q68EV0|PGAP3_XENLA (e_value=4e-50) Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1;; (*TAIR) AT5G62130.1 (e_value=5e-154) | Symbols: | Per1-like family protein | chr5:24950685-24952918 REVERSE LENGTH=343;; (*ITAG) Solyc06g035690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21403448-21409621 transcript_region:SL2.40ch06:21403448..21409621+ go_terms:GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_XENTR); contains Interpro domain(s) IPR007217 Per1-like "; GO:0016788 NbS00004735g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|59; (*SWP) sp|P49387|RT14_BRANA (e_value=8e-31) Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1;; (*TAIR) AT2G34520.1 (e_value=2e-27) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=2e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00004735g0001.1 protein AED:0.29 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|198; (*SWP) sp|O82012|HSP12_SOLPE (e_value=2e-81) 17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT1G07400.1 (e_value=7e-71) | Symbols: | HSP20-like chaperones superfamily protein | chr1:2275148-2275621 FORWARD LENGTH=157;; (*ITAG) Solyc06g076560.1.1 (e_value=3e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43949614-43950078 transcript_region:SL2.40ch06:43949614..43950078+ go_terms:GO:0051082 functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00004735g0011.1 protein AED:0.03 eAED:0.03 QI:551|1|0.8|1|1|1|5|375|393; (*ITAG) Solyc06g076490.2.1 (e_value=1e-119) genomic_reference:SL2.40ch06 gene_region:43912113-43917265 transcript_region:SL2.40ch06:43912113..43917265+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004735g0014.1 protein AED:0.38 eAED:0.41 QI:0|0.75|0.8|1|0.5|0.6|5|457|154; (*SWP) sp|O82796|SERB_ARATH (e_value=1e-61) Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2;; (*TAIR) AT1G18640.2 (e_value=1e-62) | Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416524-6418245 REVERSE LENGTH=295;; (*ITAG) Solyc06g076510.2.1 (e_value=3e-73) genomic_reference:SL2.40ch06 gene_region:43933252-43936499 transcript_region:SL2.40ch06:43933252..43936499+ go_terms:GO:0004647,GO:0005515 functional_description:"Phosphoserine phosphatase (AHRD V1 **** B6SU38_MAIZE); contains Interpro domain(s) IPR004469 Phosphoserine phosphatase SerB "; GO:0004647,GO:0005515 NbS00004735g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|174; (*ITAG) Solyc07g064360.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63767805-63769997 transcript_region:SL2.40ch07:63767805..63769997- functional_description:"Aminotransferase-like protein (AHRD V1 *--- Q68UQ8_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00004735g0004.1 protein AED:0.46 eAED:0.47 QI:0|1|0.33|1|1|1|3|0|113; (*SWP) sp|O82796|SERB_ARATH (e_value=5e-48) Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2;; (*TAIR) AT1G18640.2 (e_value=4e-49) | Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416524-6418245 REVERSE LENGTH=295;; (*ITAG) Solyc06g076510.2.1 (e_value=3e-73) genomic_reference:SL2.40ch06 gene_region:43933252-43936499 transcript_region:SL2.40ch06:43933252..43936499+ go_terms:GO:0004647,GO:0005515 functional_description:"Phosphoserine phosphatase (AHRD V1 **** B6SU38_MAIZE); contains Interpro domain(s) IPR004469 Phosphoserine phosphatase SerB "; GO:0004647,GO:0005515 NbS00029936g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|0|1|0|80 NbS00029936g0003.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0|0|2|0|80; (*ITAG) Solyc12g042680.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00010243g0006.1 protein AED:0.23 eAED:0.24 QI:0|1|0.6|1|1|1|5|0|224; (*SWP) sp|P47758|SRPRB_MOUSE (e_value=3e-20) Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1;; (*TAIR) AT5G05670.1 (e_value=8e-112) | Symbols: | signal recognition particle binding | chr5:1695916-1697534 REVERSE LENGTH=260;; (*ITAG) Solyc03g112450.2.1 (e_value=2e-130) genomic_reference:SL2.40ch03 gene_region:56900116-56907702 transcript_region:SL2.40ch03:56900116..56907702- go_terms:GO:0005515 functional_description:"Signal recognition particle receptor beta subunit-like protein (AHRD V1 ***- Q0WRZ7_ARATH); contains Interpro domain(s) IPR019009 Signal recognition particle receptor, beta subunit "; GO:0005515 NbS00010243g0008.1 protein AED:0.03 eAED:0.04 QI:174|1|1|1|0.6|0.66|6|429|566; (*SWP) sp|Q9LDA9|CAF2P_ARATH (e_value=0.0) CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1;; (*TAIR) AT1G23400.1 (e_value=0.0) | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr1:8312199-8314740 REVERSE LENGTH=564;; (*ITAG) Solyc11g066300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49109493-49114483 transcript_region:SL2.40ch11:49109493..49114483+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 2, chloroplastic (AHRD V1 ***- CAF2P_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00010243g0007.1 protein AED:0.30 eAED:0.36 QI:105|0.42|0.62|1|0.14|0.25|8|265|213; (*TAIR) AT1G10660.1 (e_value=4e-25) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62960.1); Has 155 Blast hits to 154 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 139; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:3533009-3534781 FORWARD LENGTH=320;; (*ITAG) Solyc11g066310.1.1 (e_value=8e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49117821-49121375 transcript_region:SL2.40ch11:49117821..49121375+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00035354g0004.1 protein AED:0.29 eAED:0.40 QI:0|0|0|1|1|1|2|0|154 NbS00035354g0006.1 protein AED:0.08 eAED:0.09 QI:0|0.8|0.66|1|0.4|0.5|6|0|159; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=2e-55) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=1e-56) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc07g045430.2.1 (e_value=1e-81) genomic_reference:SL2.40ch07 gene_region:55851110-55854983 transcript_region:SL2.40ch07:55851110..55854983+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00009404g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.16|0.66|0.8|1|6|0|616; (*SWP) sp|Q66GP0|Y5738_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2;; (*TAIR) AT5G67385.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26884754-26887083 FORWARD LENGTH=604;; (*ITAG) Solyc02g092560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48190481-48194067 transcript_region:SL2.40ch02:48190481..48194067- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00009404g0010.1 protein AED:0.30 eAED:0.36 QI:0|0|0|0.75|0.33|0.25|4|0|218; (*TAIR) AT5G67390.2 (e_value=2e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 186 Blast hits to 186 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr5:26887883-26888512 REVERSE LENGTH=176;; (*ITAG) Solyc02g092590.2.1 (e_value=7e-57) genomic_reference:SL2.40ch02 gene_region:48222953-48223908 transcript_region:SL2.40ch02:48222953..48223908+ functional_description:"Os03g0604500 protein (Fragment) (AHRD V1 *-*- C7J083_ORYSJ)"; NbS00024316g0014.1 protein AED:0.04 eAED:0.04 QI:177|1|1|1|1|1|4|281|237; (*SWP) sp|O81263|KITH_ORYSJ (e_value=1e-105) Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2;; (*TAIR) AT5G23070.1 (e_value=5e-104) | Symbols: | Thymidine kinase | chr5:7741979-7742827 FORWARD LENGTH=282;; (*ITAG) Solyc11g065760.1.1 (e_value=8e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48443570-48446534 transcript_region:SL2.40ch11:48443570..48446534- go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- Q71F77_SOLLC); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00024316g0016.1 protein AED:0.29 eAED:0.29 QI:208|1|1|1|0|0.25|4|235|126; (*TAIR) AT3G07760.2 (e_value=1e-76) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2476723-2477947 FORWARD LENGTH=125;; (*ITAG) Solyc12g006160.1.1 (e_value=3e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:705507-710106 transcript_region:SL2.40ch12:705507..710106- functional_description:"Downward leaf curling protein (AHRD V1 ***- B3XZN9_CUCME); contains Interpro domain(s) IPR011510 Sterile alpha motif homology 2 "; NbS00024316g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|113 NbS00024316g0009.1 protein AED:0.44 eAED:0.44 QI:0|0.33|0|0.75|1|1|4|0|405; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=1e-41) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=1e-42) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc12g006170.1.1 (e_value=1e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:712968-715497 transcript_region:SL2.40ch12:712968..715497- go_terms:GO:0045449 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00024316g0013.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|1|1|3|0|175; (*TAIR) AT2G04880.2 (e_value=1e-12) | Symbols: ZAP1, ATWRKY1, WRKY1 | zinc-dependent activator protein-1 | chr2:1718557-1720219 FORWARD LENGTH=463;; (*ITAG) Solyc12g006170.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:712968-715497 transcript_region:SL2.40ch12:712968..715497- go_terms:GO:0045449 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00024316g0010.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.5|1|1|4|0|564; (*SWP) sp|Q54ML1|NADE_DICDI (e_value=7e-18) Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1;; (*TAIR) AT1G55090.1 (e_value=2e-27) | Symbols: | carbon-nitrogen hydrolase family protein | chr1:20554857-20558188 FORWARD LENGTH=725;; (*ITAG) Solyc08g082830.2.1 (e_value=8e-30) genomic_reference:SL2.40ch08 gene_region:62660064-62668736 transcript_region:SL2.40ch08:62660064..62668736- go_terms:GO:0042802 functional_description:"NH(3)-dependent NAD(+) synthetase (AHRD V1 ***- A1ZGC5_9BACT); contains Interpro domain(s) IPR014445 Glutamine-dependent NAD(+) synthetase, GAT region "; GO:0042802 NbS00024316g0012.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|66 NbS00003896g0013.1 protein AED:0.01 eAED:0.01 QI:352|1|1|1|0.75|0.8|5|179|569; (*TAIR) AT2G40070.2 (e_value=2e-58) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink). | chr2:16728378-16731040 REVERSE LENGTH=567;; (*ITAG) Solyc03g096090.2.1 (e_value=4e-90) genomic_reference:SL2.40ch03 gene_region:51386093-51392949 transcript_region:SL2.40ch03:51386093..51392949+ functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00003896g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|93|86 NbS00003896g0014.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|0.5|1|3|347|78; (*SWP) sp|P59234|YIPL_SOLTU (e_value=4e-41) Protein yippee-like OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G40110.1 (e_value=1e-31) | Symbols: | Yippee family putative zinc-binding protein | chr2:16748159-16749357 FORWARD LENGTH=130;; (*ITAG) Solyc03g096080.2.1 (e_value=4e-42) genomic_reference:SL2.40ch03 gene_region:51376491-51382146 transcript_region:SL2.40ch03:51376491..51382146+ go_terms:GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0008270 NbS00003896g0017.1 protein AED:0.27 eAED:0.29 QI:0|0.2|0|0.83|0.2|0.16|6|0|342; (*SWP) sp|Q9ZT48|ATE1_ARATH (e_value=6e-30) Arginyl-tRNA--protein transferase 1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=2;; (*TAIR) AT5G05700.1 (e_value=5e-31) | Symbols: ATE1, DLS1, ATATE1 | arginine-tRNA protein transferase 1 | chr5:1712950-1715639 REVERSE LENGTH=632;; (*ITAG) Solyc06g051760.2.1 (e_value=3e-45) genomic_reference:SL2.40ch06 gene_region:31855291-31863999 transcript_region:SL2.40ch06:31855291..31863999- go_terms:GO:0004057 functional_description:"Arginyl-tRNA--protein transferase 1 (AHRD V1 ***- B9SLM9_RICCO); contains Interpro domain(s) IPR017137 Arginine-tRNA-protein transferase 1, eukaryotic "; GO:0004057 NbS00003896g0111.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|1|1|4|0|201 NbS00003896g0112.1 protein AED:0.20 eAED:0.60 QI:0|0|0|1|0|0.5|2|0|68 NbS00003896g0101.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|200 NbS00003896g0115.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|0.5|2|0|241 NbS00003896g0213.1 protein AED:0.01 eAED:0.01 QI:90|1|1|1|0|0.5|2|216|470 NbS00003896g0215.1 protein AED:0.11 eAED:0.13 QI:0|0.33|0.5|1|0.33|0.25|4|324|173 NbS00003896g0217.1 protein AED:0.38 eAED:0.40 QI:0|0.5|0|1|0.5|0.66|3|0|184 NbS00003896g0218.1 protein AED:0.43 eAED:0.46 QI:0|0.5|0|1|0|0|3|0|103 NbS00058276g0004.1 protein AED:0.19 eAED:0.19 QI:587|1|1|1|0.83|0.85|7|580|343; (*SWP) sp|Q8VZ02|BH048_ARATH (e_value=6e-73) Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1;; (*TAIR) AT3G57800.2 (e_value=2e-76) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21408034-21411321 REVERSE LENGTH=379;; (*ITAG) Solyc10g079070.1.1 (e_value=1e-137) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60025990-60030733 transcript_region:SL2.40ch10:60025990..60030733+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00023616g0019.1 protein AED:0.15 eAED:0.15 QI:444|1|0.9|1|1|0.9|10|0|530; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT1G09270.2 (e_value=0.0) | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2994506-2997833 FORWARD LENGTH=538;; (*ITAG) Solyc01g100720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82438317-82447158 transcript_region:SL2.40ch01:82438317..82447158- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00023616g0014.1 protein AED:0.53 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|78; (*TAIR) AT5G26800.1 (e_value=3e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9425224-9426485 FORWARD LENGTH=112;; (*ITAG) Solyc01g100700.2.1 (e_value=8e-40) genomic_reference:SL2.40ch01 gene_region:82425684-82429183 transcript_region:SL2.40ch01:82425684..82429183- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019083 IGR protein motif "; NbS00023616g0018.1 protein AED:0.36 eAED:0.38 QI:33|0|0.33|1|0.2|0.83|6|284|312; (*ITAG) Solyc01g100690.2.1 (e_value=2e-55) genomic_reference:SL2.40ch01 gene_region:82421716-82425412 transcript_region:SL2.40ch01:82421716..82425412+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028220g0113.1 protein AED:0.16 eAED:0.16 QI:304|1|1|1|0.6|0.66|6|334|146 NbS00028220g0110.1 protein AED:0.18 eAED:0.18 QI:364|1|1|1|0.94|0.94|19|264|591 NbS00061516g0002.1 protein AED:0.36 eAED:0.38 QI:211|0.66|0.75|1|0|0.25|4|0|127; (*SWP) sp|Q6NPG7|Y5382_ARATH (e_value=2e-25) Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1;; (*TAIR) AT5G43822.1 (e_value=2e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17620830-17621868 FORWARD LENGTH=195;; (*ITAG) Solyc08g069130.1.1 (e_value=7e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55412822-55413421 transcript_region:SL2.40ch08:55412822..55413421- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MNK9_ARALY)"; NbS00061516g0003.1 protein AED:0.44 eAED:1.00 QI:0|0|0|1|0|0|2|0|88 NbS00028316g0017.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|1|1|3|0|85; (*ITAG) Solyc09g056320.1.1 (e_value=7e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:44208524-44208889 transcript_region:SL2.40ch09:44208524..44208889+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028316g0023.1 protein AED:0.11 eAED:0.11 QI:173|1|1|1|1|1|11|532|584; (*SWP) sp|Q9LV37|MPK9_ARATH (e_value=0.0) Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2;; (*TAIR) AT3G18040.1 (e_value=0.0) | Symbols: MPK9 | MAP kinase 9 | chr3:6174800-6178150 FORWARD LENGTH=510;; (*ITAG) Solyc12g040680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40280910-40287741 transcript_region:SL2.40ch12:40280910..40287741+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** Q5XU40_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00028316g0022.1 protein AED:0.30 eAED:0.36 QI:0|0|0.16|0.66|0.4|0.33|6|0|267; (*SWP) sp|Q5QMT0|BGL01_ORYSJ (e_value=3e-75) Beta-glucosidase 1 OS=Oryza sativa subsp. japonica GN=BGLU1 PE=2 SV=1;; (*TAIR) AT3G18080.1 (e_value=1e-73) | Symbols: BGLU44 | B-S glucosidase 44 | chr3:6191586-6194124 FORWARD LENGTH=512;; (*ITAG) Solyc12g040640.1.1 (e_value=2e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40136352-40141560 transcript_region:SL2.40ch12:40136352..40141560- go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00028316g0027.1 protein AED:0.43 eAED:0.76 QI:0|0|0|0.28|0.66|0.71|7|0|299; (*ITAG) Solyc04g025250.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18317784-18321583 transcript_region:SL2.40ch04:18317784..18321583+ go_terms:GO:0003677 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017956 AT hook, DNA-binding, conserved site "; GO:0003677 NbS00028316g0024.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|121 NbS00011970g0027.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.83|1|0.6|0.5|6|228|269; (*SWP) sp|O74503|UAF30_SCHPO (e_value=3e-17) Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1;; (*TAIR) AT4G22360.1 (e_value=2e-86) | Symbols: | SWIB complex BAF60b domain-containing protein | chr4:11807811-11809660 FORWARD LENGTH=385;; (*ITAG) Solyc11g012290.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5148298-5151054 transcript_region:SL2.40ch11:5148298..5151054+ functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 *-*- B6TD34_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00011970g0030.1 protein AED:0.01 eAED:0.01 QI:108|1|1|1|1|1|3|324|211; (*TAIR) AT5G20130.1 (e_value=6e-42) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:6797485-6798700 FORWARD LENGTH=202;; (*ITAG) Solyc11g012280.1.1 (e_value=2e-86) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5141697-5145240 transcript_region:SL2.40ch11:5141697..5145240- functional_description:"Unknown Protein (AHRD V1)"; NbS00011970g0026.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0.8|0.83|6|203|543; (*SWP) sp|Q8LG88|TDT_ARATH (e_value=0.0) Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2;; (*TAIR) AT5G47560.1 (e_value=0.0) | Symbols: ATTDT, ATSDAT, TDT | tonoplast dicarboxylate transporter | chr5:19287895-19290347 REVERSE LENGTH=540;; (*ITAG) Solyc11g012360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5208388-5212579 transcript_region:SL2.40ch11:5208388..5212579+ go_terms:GO:0016020 functional_description:"Sodium-dependent dicarboxylate transporter (AHRD V1 ***- O35055_RAT); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0016020 NbS00011970g0029.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.5|1|1|1|6|359|249; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=1e-90) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=9e-92) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc11g012270.1.1 (e_value=2e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5136039-5138781 transcript_region:SL2.40ch11:5136039..5138781- go_terms:GO:0005737 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 ***- Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0005737 NbS00011970g0032.1 protein AED:0.21 eAED:0.24 QI:119|0.66|0.5|1|0.33|0.25|4|0|866; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=0.0) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00011970g0024.1 protein AED:0.32 eAED:0.32 QI:0|0|0.66|1|1|1|3|340|105; (*ITAG) Solyc11g012300.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5151946-5153449 transcript_region:SL2.40ch11:5151946..5153449- functional_description:"Unknown Protein (AHRD V1)"; NbS00037436g0005.1 protein AED:0.22 eAED:0.28 QI:342|0.5|0.28|1|0.83|0.71|7|0|253; (*SWP) sp|Q9C552|PUM23_ARATH (e_value=4e-33) Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1;; (*TAIR) AT1G72320.3 (e_value=3e-34) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232514 REVERSE LENGTH=731;; (*ITAG) Solyc03g123640.2.1 (e_value=1e-53) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00004725g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|1|1|4|350|187 NbS00019731g0009.1 protein AED:0.11 eAED:0.15 QI:0|0|0|0.6|0.75|0.6|5|0|253; (*TAIR) AT4G14830.1 (e_value=2e-34) | Symbols: HSP1 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22530.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8510983-8511441 FORWARD LENGTH=152;; (*ITAG) Solyc09g065370.1.1 (e_value=5e-59) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59066135-59066623 transcript_region:SL2.40ch09:59066135..59066623- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00019731g0008.1 protein AED:0.18 eAED:0.18 QI:509|0.33|0.5|0.5|0.66|0.5|4|1031|201; (*TAIR) AT4G02715.1 (e_value=1e-18) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1202170-1202787 REVERSE LENGTH=205;; (*ITAG) Solyc06g084200.1.1 (e_value=6e-80) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:45676332-45677006 transcript_region:SL2.40ch06:45676332..45677006- functional_description:"Unknown Protein (AHRD V1)"; NbS00019731g0010.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|99; (*SWP) sp|Q2MI91|ACCD_SOLLC (e_value=1e-42) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Solanum lycopersicum GN=accD PE=1 SV=2;; (*ITAG) ATCG00500.1 (e_value=4e-34) | Symbols: ACCD | acetyl-CoA carboxylase carboxyl transferase subunit beta | chrC:57075-58541 FORWARD LENGTH=488;; (*ITAG) Solyc01g007340.2.1 (e_value=8e-44) genomic_reference:SL2.40ch01 gene_region:1854314-1856231 transcript_region:SL2.40ch01:1854314..1856231+ go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (AHRD V1 ***- ACCD_EPIVI); contains Interpro domain(s) IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit "; GO:0009317,GO:0016874 NbS00020012g0006.1 protein AED:0.31 eAED:0.31 QI:270|0.83|1|1|0.5|0.28|7|377|500; (*TAIR) AT1G53190.2 (e_value=1e-53) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc12g014070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4889094-4892699 transcript_region:SL2.40ch12:4889094..4892699+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 ***- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00051209g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|127 NbS00012130g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|458; (*SWP) sp|Q948R1|PLA11_ARATH (e_value=1e-153) Phospholipase A(1) DAD1, chloroplastic OS=Arabidopsis thaliana GN=DAD1 PE=1 SV=1;; (*TAIR) AT2G44810.1 (e_value=4e-153) | Symbols: DAD1 | alpha/beta-Hydrolases superfamily protein | chr2:18479095-18480168 FORWARD LENGTH=357;; (*ITAG) Solyc05g053920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63091393-63092700 transcript_region:SL2.40ch05:63091393..63092700+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00031449g0003.1 protein AED:0.10 eAED:0.10 QI:160|1|1|1|1|1|3|248|130; (*SWP) sp|P42798|R15A1_ARATH (e_value=3e-92) 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2;; (*TAIR) AT5G59850.1 (e_value=2e-93) | Symbols: | Ribosomal protein S8 family protein | chr5:24112499-24113084 REVERSE LENGTH=130;; (*ITAG) Solyc03g121370.2.1 (e_value=1e-44) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00031449g0006.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|147; (*ITAG) Solyc01g057890.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:57024979-57027433 transcript_region:SL2.40ch01:57024979..57027433- functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9LTL3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00031549g0003.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.33|1|1|1|6|0|537; (*SWP) sp|Q8H1D3|NPY1_ARATH (e_value=0.0) BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana GN=NPY1 PE=2 SV=1;; (*TAIR) AT4G31820.1 (e_value=0.0) | Symbols: ENP, NPY1, MAB4 | Phototropic-responsive NPH3 family protein | chr4:15390788-15393627 REVERSE LENGTH=571;; (*ITAG) Solyc08g006870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1416352-1421980 transcript_region:SL2.40ch08:1416352..1421980+ go_terms:GO:0005515,GO:0009416 functional_description:"BZIP domain class transcription factor (AHRD V1 **-- D9ZIQ8_MALDO); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00028578g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|440|604; (*SWP) sp|O54922|EXOC7_RAT (e_value=3e-22) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT3G14090.1 (e_value=0.0) | Symbols: ATEXO70D3, EXO70D3 | exocyst subunit exo70 family protein D3 | chr3:4669508-4671379 REVERSE LENGTH=623;; (*ITAG) Solyc06g062990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36145808-36147598 transcript_region:SL2.40ch06:36145808..36147598- go_terms:GO:0005515 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00013999g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|94; (*TAIR) AT1G11760.1 (e_value=2e-16) | Symbols: MED32 | MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3972356-3972811 REVERSE LENGTH=151;; (*ITAG) Solyc09g082740.1.1 (e_value=7e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:63827410-63827697 transcript_region:SL2.40ch09:63827410..63827697- functional_description:"Unknown Protein (AHRD V1)"; NbS00013999g0010.1 protein AED:0.23 eAED:0.23 QI:161|0.8|0.83|0.83|0.8|0.83|6|0|245; (*SWP) sp|C6TBN2|AKR1_SOYBN (e_value=3e-103) Probable aldo-keto reductase 1 OS=Glycine max GN=AKR1 PE=2 SV=1;; (*TAIR) AT1G60750.1 (e_value=1e-84) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22362293-22363854 REVERSE LENGTH=330;; (*ITAG) Solyc09g082730.2.1 (e_value=1e-138) genomic_reference:SL2.40ch09 gene_region:63820711-63824566 transcript_region:SL2.40ch09:63820711..63824566- go_terms:GO:0050235,GO:0004033 functional_description:"Aldo/keto reductase family protein (AHRD V1 **** D7KWQ6_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0050235,GO:0004033 NbS00013999g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|127; (*ITAG) Solyc01g057740.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00013960g0002.1 protein AED:0.00 eAED:0.00 QI:179|1|0.75|1|0|0|4|2112|288; (*SWP) sp|Q8RX01|Y3567_ARATH (e_value=1e-64) BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1;; (*TAIR) AT4G10800.1 (e_value=3e-82) | Symbols: | BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G05675.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr4:6643678-6644529 FORWARD LENGTH=283;; (*ITAG) Solyc01g005670.2.1 (e_value=4e-179) genomic_reference:SL2.40ch01 gene_region:465032-467636 transcript_region:SL2.40ch01:465032..467636+ functional_description:"Disease resistance protein (AHRD V1 ***- D1GEG2_BRARP)"; NbS00013960g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|279; (*SWP) sp|Q38850|MYB5_ARATH (e_value=6e-84) Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1;; (*TAIR) AT3G13540.1 (e_value=5e-85) | Symbols: ATMYB5, MYB5 | myb domain protein 5 | chr3:4420239-4421443 FORWARD LENGTH=249;; (*ITAG) Solyc01g005660.1.1 (e_value=3e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:460050-461945 transcript_region:SL2.40ch01:460050..461945+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb transcription factor (AHRD V1 **-- Q6Q789_VITVI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00036480g0007.1 protein AED:0.22 eAED:0.23 QI:0|0.5|0.28|1|0.5|0.28|7|0|713; (*SWP) sp|O94387|YGSA_SCHPO (e_value=1e-39) Uncharacterized ATP-dependent helicase C29A10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A10.10c PE=2 SV=1;; (*TAIR) AT1G65810.1 (e_value=6e-122) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1050;; (*ITAG) Solyc02g081420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39973273-39980010 transcript_region:SL2.40ch02:39973273..39980010- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00036480g0008.1 protein AED:0.39 eAED:0.57 QI:0|0.16|0|0.85|0.5|0.42|7|0|362; (*TAIR) AT1G65810.2 (e_value=4e-44) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1016;; (*ITAG) Solyc02g081420.2.1 (e_value=2e-113) genomic_reference:SL2.40ch02 gene_region:39973273-39980010 transcript_region:SL2.40ch02:39973273..39980010- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00036480g0009.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0|1|0.33|0.5|4|0|131; (*TAIR) AT1G65820.3 (e_value=8e-28) | Symbols: | microsomal glutathione s-transferase, putative | chr1:24485213-24486682 FORWARD LENGTH=194;; (*ITAG) Solyc02g081430.2.1 (e_value=5e-32) genomic_reference:SL2.40ch02 gene_region:39982861-39984643 transcript_region:SL2.40ch02:39982861..39984643+ go_terms:GO:0004601,GO:0004364 functional_description:"Microsomal glutathione S-transferase 3 (AHRD V1 **** B4FLH3_MAIZE); contains Interpro domain(s) IPR001129 Membrane-associated, eicosanoid and glutathione metabolism (MAPEG) "; GO:0004601,GO:0004364 NbS00013548g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|4|0|646; (*TAIR) AT5G25590.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr5:8906684-8909847 REVERSE LENGTH=775;; (*ITAG) Solyc08g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54382711-54391510 transcript_region:SL2.40ch08:54382711..54391510- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 **-- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00013548g0002.1 protein AED:0.43 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|146; (*TAIR) AT5G25590.1 (e_value=2e-22) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr5:8906684-8909847 REVERSE LENGTH=775;; (*ITAG) Solyc08g068100.2.1 (e_value=1e-36) genomic_reference:SL2.40ch08 gene_region:54382711-54391510 transcript_region:SL2.40ch08:54382711..54391510- go_terms:GO:0003677 functional_description:"Bzip-like transcription factor-like (AHRD V1 **-- Q7X997_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00019288g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0|1|0.33|0.25|4|0|310; (*SWP) sp|P29516|TBB8_ARATH (e_value=2e-127) Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2;; (*TAIR) AT5G23860.2 (e_value=1e-128) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc10g085020.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63679058-63680810 transcript_region:SL2.40ch10:63679058..63680810- go_terms:GO:0005874,GO:0043234 functional_description:"Tubulin beta chain (AHRD V1 ***- B9HP96_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005874,GO:0043234 NbS00059771g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|154; (*TAIR) AT1G49000.1 (e_value=2e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: stem; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18560.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18123559-18124029 REVERSE LENGTH=156;; (*ITAG) Solyc03g119810.1.1 (e_value=2e-90) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:62440995-62441450 transcript_region:SL2.40ch03:62440995..62441450+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008856g0009.1 protein AED:0.11 eAED:0.11 QI:200|1|1|1|0.8|0.66|6|278|507; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=6e-45) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT1G72480.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr1:27286304-27288339 REVERSE LENGTH=509;; (*ITAG) Solyc03g122250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64185690-64190037 transcript_region:SL2.40ch03:64185690..64190037- go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00008856g0012.1 protein AED:0.57 eAED:0.57 QI:0|0.66|0.5|0.75|1|1|4|0|104; (*TAIR) AT3G14080.2 (e_value=6e-47) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128;; (*ITAG) Solyc03g122260.2.1 (e_value=4e-53) genomic_reference:SL2.40ch03 gene_region:64190751-64195511 transcript_region:SL2.40ch03:64190751..64195511- go_terms:GO:0005515,GO:0000339 functional_description:"U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0000339 NbS00008856g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.2|0.8|0.75|0.8|5|411|552; (*TAIR) AT3G14075.2 (e_value=4e-139) | Symbols: | Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 | chr3:4663819-4666338 REVERSE LENGTH=642;; (*ITAG) Solyc03g122290.2.1 (e_value=2e-134) genomic_reference:SL2.40ch03 gene_region:64213482-64217360 transcript_region:SL2.40ch03:64213482..64217360+ go_terms:GO:0006629 functional_description:"Lipase family protein expressed (AHRD V1 ***- Q2QNT9_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00008856g0011.1 protein AED:0.64 eAED:0.69 QI:0|0.5|0|0.66|0|0|3|0|77 NbS00020079g0005.1 protein AED:0.31 eAED:0.33 QI:82|0.55|0.5|1|0.66|0.6|10|0|380; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=5e-157) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G41260.1 (e_value=3e-158) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:16503997-16506970 FORWARD LENGTH=487;; (*ITAG) Solyc12g099830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65155426-65160628 transcript_region:SL2.40ch12:65155426..65160628- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase 2 (AHRD V1 ***- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00013599g0013.1 protein AED:0.08 eAED:0.08 QI:115|1|0.83|1|1|1|6|146|323; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=8e-122) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=6e-123) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g097510.2.1 (e_value=1e-163) genomic_reference:SL2.40ch01 gene_region:80096980-80100082 transcript_region:SL2.40ch01:80096980..80100082- go_terms:GO:0005544 functional_description:"Annexin 3 (AHRD V1 ***- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00013599g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.88|1|0.56|0.70|17|0|627; (*SWP) sp|Q9SDX3|UGPA_MUSAC (e_value=1e-117) UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1;; (*TAIR) AT3G03250.1 (e_value=4e-101) | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE 1 | chr3:749761-754014 REVERSE LENGTH=469;; (*ITAG) Solyc01g081520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73222596-73233236 transcript_region:SL2.40ch01:73222596..73233236- go_terms:GO:0003983,GO:0042802 functional_description:"30S ribosomal protein S2 (AHRD V1 *-*- RS2_RHOCS); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0003983,GO:0042802 NbS00013599g0019.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|212; (*SWP) sp|O34948|YKWC_BACSU (e_value=1e-42) Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1;; (*TAIR) AT1G71170.1 (e_value=9e-71) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr1:26830673-26831572 FORWARD LENGTH=299;; (*ITAG) Solyc01g081510.2.1 (e_value=1e-127) genomic_reference:SL2.40ch01 gene_region:73219130-73220362 transcript_region:SL2.40ch01:73219130..73220362+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"3-hydroxyisobutyrate dehydrogenase (AHRD V1 ***- D8MAS0_BLAHO); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00013599g0018.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|2|0|303; (*SWP) sp|O34948|YKWC_BACSU (e_value=1e-58) Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1;; (*TAIR) AT4G29120.1 (e_value=3e-100) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr4:14350861-14351865 FORWARD LENGTH=334;; (*ITAG) Solyc01g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73219130-73220362 transcript_region:SL2.40ch01:73219130..73220362+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"3-hydroxyisobutyrate dehydrogenase (AHRD V1 ***- D8MAS0_BLAHO); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00036059g0001.1 protein AED:0.26 eAED:0.27 QI:0|0|0|0.75|1|1|4|0|412; (*TAIR) AT5G05550.1 (e_value=2e-53) | Symbols: | sequence-specific DNA binding transcription factors | chr5:1639344-1640550 REVERSE LENGTH=246;; (*ITAG) Solyc06g051120.2.1 (e_value=1e-121) genomic_reference:SL2.40ch06 gene_region:30709379-30717882 transcript_region:SL2.40ch06:30709379..30717882- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **-* D7LYY3_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00036059g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|193; (*SWP) sp|Q9SRL8|LBD21_ARATH (e_value=1e-59) LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1;; (*TAIR) AT3G11090.1 (e_value=8e-61) | Symbols: LBD21 | LOB domain-containing protein 21 | chr3:3475036-3475533 FORWARD LENGTH=165;; (*ITAG) Solyc03g095940.1.1 (e_value=1e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:51109385-51109897 transcript_region:SL2.40ch03:51109385..51109897+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 ***- D7L9U4_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00040351g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.75|1|0.66|0.5|4|290|361; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=5e-57) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT2G36690.1 (e_value=3e-153) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc09g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2048866-2052899 transcript_region:SL2.40ch09:2048866..2052899+ go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- ACCO_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00006143g0012.1 protein AED:0.01 eAED:0.01 QI:135|1|0.5|1|1|1|2|0|289; (*SWP) sp|Q9FMY4|Y5316_ARATH (e_value=5e-24) Uncharacterized protein At5g23160 OS=Arabidopsis thaliana GN=At5g23160 PE=2 SV=1;; (*TAIR) AT5G23160.1 (e_value=4e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:7795409-7796310 REVERSE LENGTH=271; NbS00006143g0010.1 protein AED:0.18 eAED:0.19 QI:0|1|0.5|1|1|1|2|0|237; (*SWP) sp|Q9FN42|CLPP2_ARATH (e_value=5e-125) ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1;; (*TAIR) AT5G23140.1 (e_value=4e-126) | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease P7 | chr5:7783811-7784826 FORWARD LENGTH=241;; (*ITAG) Solyc04g009310.2.1 (e_value=4e-153) genomic_reference:SL2.40ch04 gene_region:2760682-2765405 transcript_region:SL2.40ch04:2760682..2765405+ go_terms:GO:0005515 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A5AL82_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515 NbS00006143g0007.1 protein AED:0.29 eAED:0.29 QI:702|0.5|0.6|1|0.75|0.6|5|317|448; (*TAIR) AT3G18670.1 (e_value=3e-78) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc02g068670.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33196894-33199149 transcript_region:SL2.40ch02:33196894..33199149+ go_terms:GO:0005515 functional_description:"Ankyrin repeat-containing protein At3g12360 (AHRD V1 **-- Y3236_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00006143g0004.1 protein AED:0.43 eAED:0.48 QI:739|0.66|0.5|1|0.66|0.5|4|0|283; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=4e-35) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT2G05260.2 (e_value=4e-39) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1918730-1919792 FORWARD LENGTH=294;; (*ITAG) Solyc08g082450.2.1 (e_value=1e-52) genomic_reference:SL2.40ch08 gene_region:62421383-62426129 transcript_region:SL2.40ch08:62421383..62426129+ go_terms:GO:0006629 functional_description:"Lipase class 3 family protein (AHRD V1 ***- D7LYU5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00023178g0012.1 protein AED:0.84 eAED:0.91 QI:51|0|0|0.4|1|1|5|0|140; (*SWP) sp|Q9ZUU9|AB3G_ARATH (e_value=7e-32) ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2;; (*TAIR) AT2G28070.1 (e_value=5e-33) | Symbols: | ABC-2 type transporter family protein | chr2:11956432-11959782 FORWARD LENGTH=730;; (*ITAG) Solyc11g069710.1.1 (e_value=1e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51394342-51402692 transcript_region:SL2.40ch11:51394342..51402692- go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 3 (AHRD V1 ***- AB3G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00023178g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|3|0|413; (*SWP) sp|Q40034|EF1A2_HORVU (e_value=0.0) Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00023178g0006.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|62; (*ITAG) Solyc11g011670.1.1 (e_value=8e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4702217-4702651 transcript_region:SL2.40ch11:4702217..4702651- functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00023178g0008.1 protein AED:0.37 eAED:0.40 QI:263|0.66|0.85|1|0.16|0.28|7|508|105; (*SWP) sp|Q10N04|PDI51_ORYSJ (e_value=9e-53) Protein disulfide isomerase-like 5-1 OS=Oryza sativa subsp. japonica GN=PDIL5-1 PE=2 SV=1;; (*TAIR) AT1G07960.1 (e_value=3e-52) | Symbols: ATPDIL5-1, PDIL5-1 | PDI-like 5-1 | chr1:2467681-2468831 FORWARD LENGTH=146;; (*ITAG) Solyc11g069690.1.1 (e_value=5e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51383609-51389361 transcript_region:SL2.40ch11:51383609..51389361+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD4_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00026462g0004.1 protein AED:0.66 eAED:0.66 QI:70|0.5|0.66|0.66|0|0|3|0|24 NbS00056859g0001.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|1|1|2|0|153; (*SWP) sp|Q93VM8|COPT5_ARATH (e_value=1e-43) Copper transporter 5 OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1;; (*TAIR) AT5G20650.1 (e_value=1e-44) | Symbols: COPT5 | copper transporter 5 | chr5:6985481-6985921 REVERSE LENGTH=146;; (*ITAG) Solyc02g082080.1.1 (e_value=1e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40382591-40383040 transcript_region:SL2.40ch02:40382591..40383040- go_terms:GO:0015088 functional_description:"High affinity copper uptake protein (AHRD V1 **** Q8QH07_DANRE); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0015088 NbS00056859g0003.1 protein AED:0.24 eAED:0.24 QI:79|0.5|0.4|0.8|0.25|0.4|5|454|47 NbS00042426g0001.1 protein AED:0.36 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|79; (*SWP) sp|O24115|DEF1_NICPA (e_value=6e-16) Defensin-like protein 1 OS=Nicotiana paniculata GN=THIO1 PE=2 SV=1; NbS00001889g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.66|0.66|0.4|0.66|6|201|286; (*ITAG) Solyc03g025160.2.1 (e_value=3e-108) genomic_reference:SL2.40ch03 gene_region:6992082-6993495 transcript_region:SL2.40ch03:6992082..6993495- functional_description:"Unknown Protein (AHRD V1)"; NbS00001889g0118.1 protein AED:0.05 eAED:0.05 QI:270|0.93|0.87|1|0.6|0.68|16|0|826 NbS00001889g0115.1 protein AED:0.16 eAED:0.16 QI:185|1|1|1|0.83|0.57|7|410|296 NbS00022566g0008.1 protein AED:0.16 eAED:0.22 QI:0|0.57|0.12|1|0.57|0.62|8|0|408; (*SWP) sp|Q94CD5|ATG7_ARATH (e_value=5e-145) Ubiquitin-like modifier-activating enzyme atg7 OS=Arabidopsis thaliana GN=ATG7 PE=1 SV=1;; (*TAIR) AT5G45900.1 (e_value=4e-146) | Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family protein | chr5:18615304-18618436 FORWARD LENGTH=697;; (*ITAG) Solyc11g068930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50569988-50574775 transcript_region:SL2.40ch11:50569988..50574775- go_terms:GO:0008152,GO:0005737,GO:0003824 functional_description:"Autophagy-related 7 (AHRD V1 ***- B8XVQ4_MAIZE); contains Interpro domain(s) IPR006285 E1-like protein-activating enzyme Gsa7p/Apg7p "; GO:0008152,GO:0005737,GO:0003824 NbS00021374g0004.1 protein AED:0.25 eAED:0.27 QI:0|0.5|0.44|1|0.87|0.77|9|542|286; (*SWP) sp|Q40784|AAPC_CENCI (e_value=3e-82) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT4G23730.1 (e_value=2e-101) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=2e-134) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00021616g0005.1 protein AED:0.26 eAED:0.26 QI:180|0.71|0.37|1|0.71|0.75|8|570|445; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=2e-42) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT2G28480.1 (e_value=2e-116) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:12176642-12178031 REVERSE LENGTH=372;; (*ITAG) Solyc12g014280.1.1 (e_value=3e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5095094-5099206 transcript_region:SL2.40ch12:5095094..5099206+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00028082g0016.1 protein AED:0.08 eAED:0.09 QI:0|1|0.85|1|0.66|0.71|7|490|832; (*SWP) sp|Q5PNS0|Y3228_ARATH (e_value=1e-41) PHD finger protein At3g20280 OS=Arabidopsis thaliana GN=At3g20280 PE=2 SV=1;; (*TAIR) AT1G50620.1 (e_value=5e-94) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:18748537-18751005 FORWARD LENGTH=629;; (*ITAG) Solyc12g014540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5523526-5533996 transcript_region:SL2.40ch12:5523526..5533996- go_terms:GO:0003677,GO:0008270 functional_description:"Lysine-specific demethylase 5C (AHRD V1 *--- KDM5C_HUMAN); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003677,GO:0008270 NbS00028082g0012.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.83|1|0.8|0.83|6|334|426; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=1e-174) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=9e-176) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00028082g0017.1 protein AED:0.33 eAED:0.42 QI:0|0.55|0.4|1|0.55|0.5|10|0|515; (*SWP) sp|Q8XWM7|NADB1_RALSO (e_value=1e-105) L-aspartate oxidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=nadB1 PE=3 SV=1;; (*TAIR) AT5G14760.1 (e_value=0.0) | Symbols: AO | L-aspartate oxidase | chr5:4769133-4772012 FORWARD LENGTH=651;; (*ITAG) Solyc12g014530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5498306-5503348 transcript_region:SL2.40ch12:5498306..5503348- go_terms:GO:0005737,GO:0016491,GO:0055114 functional_description:"L-aspartate oxidase (AHRD V1 ***- D7M6M9_ARALY); contains Interpro domain(s) IPR005288 L-aspartate oxidase "; GO:0005737,GO:0016491,GO:0055114 NbS00024299g0004.1 protein AED:0.26 eAED:0.27 QI:0|1|0.83|1|0.6|0.5|6|0|354; (*SWP) sp|B1AVH7|TBD2A_MOUSE (e_value=1e-53) TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1;; (*TAIR) AT3G07890.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:2516639-2518784 REVERSE LENGTH=400;; (*ITAG) Solyc12g005930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:554207-559357 transcript_region:SL2.40ch12:554207..559357- go_terms:GO:0005622 functional_description:"TBC1 domain family member 2 (AHRD V1 ***- Q5TBQ7_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00024255g0001.1 protein AED:0.32 eAED:0.32 QI:83|1|0.83|1|1|1|6|0|259; (*SWP) sp|Q9SZB2|TIC22_ARATH (e_value=7e-88) Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1;; (*TAIR) AT4G33350.1 (e_value=5e-89) | Symbols: | Tic22-like family protein | chr4:16064638-16066715 REVERSE LENGTH=268;; (*ITAG) Solyc04g079000.2.1 (e_value=1e-136) genomic_reference:SL2.40ch04 gene_region:61208145-61212920 transcript_region:SL2.40ch04:61208145..61212920- functional_description:"Tic22 (AHRD V1 ***- Q9ZST9_PEA); contains Interpro domain(s) IPR007378 Tic22-like "; NbS00024255g0010.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|66 NbS00024255g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc12g088840.1.1 (e_value=7e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:62498164-62498427 transcript_region:SL2.40ch12:62498164..62498427+ go_terms:GO:0005509 functional_description:"Os07g0619200 protein (Fragment) (AHRD V1 ***- Q0D4L7_ORYSJ); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00024255g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|98; (*SWP) sp|Q9SS17|RS241_ARATH (e_value=9e-44) 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1;; (*TAIR) AT3G04920.1 (e_value=7e-45) | Symbols: | Ribosomal protein S24e family protein | chr3:1360989-1362065 FORWARD LENGTH=133;; (*ITAG) Solyc01g097870.2.1 (e_value=4e-48) genomic_reference:SL2.40ch01 gene_region:80331660-80334218 transcript_region:SL2.40ch01:80331660..80334218+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00024255g0015.1 protein AED:0.46 eAED:0.66 QI:32|0|0|0.5|0.4|0.33|6|0|331; (*ITAG) Solyc01g056230.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00020869g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.62|0.44|1|1|1|9|0|533; (*SWP) sp|P29162|ASOL_TOBAC (e_value=1e-179) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc04g082140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63511091-63515964 transcript_region:SL2.40ch04:63511091..63515964- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00020869g0015.1 protein AED:0.16 eAED:0.16 QI:138|0.85|0.8|1|0.64|0.73|15|392|587; (*SWP) sp|Q3MIT2|PUS10_HUMAN (e_value=2e-76) Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1;; (*TAIR) AT1G20410.1 (e_value=3e-179) | Symbols: | Pseudouridine synthase family protein | chr1:7079049-7082504 REVERSE LENGTH=504;; (*ITAG) Solyc04g082130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63502355-63510359 transcript_region:SL2.40ch04:63502355..63510359- go_terms:GO:0005840 functional_description:"THUMP domain protein (AHRD V1 *--- D7EAV4_METEZ)"; GO:0005840 NbS00020869g0014.1 protein AED:0.24 eAED:0.24 QI:127|1|1|1|0.90|0.83|12|291|310; (*SWP) sp|Q8VYI3|ECH2_ARATH (e_value=2e-130) Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2 PE=1 SV=1;; (*TAIR) AT1G76150.1 (e_value=1e-131) | Symbols: ECH2, ATECH2 | enoyl-CoA hydratase 2 | chr1:28575236-28577637 REVERSE LENGTH=309;; (*ITAG) Solyc12g094450.1.1 (e_value=1e-167) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63006889-63010224 transcript_region:SL2.40ch12:63006889..63010224- go_terms:GO:0006508,GO:0008152 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B4FP93_MAIZE); contains Interpro domain(s) IPR002539 MaoC-like dehydratase "; GO:0006508,GO:0008152 NbS00020869g0021.1 protein AED:0.12 eAED:0.19 QI:0|0.3|0.27|0.90|0.3|0.27|11|0|607; (*SWP) sp|O70196|PPCE_RAT (e_value=1e-173) Prolyl endopeptidase OS=Rattus norvegicus GN=Prep PE=1 SV=1;; (*TAIR) AT1G76140.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr1:28571187-28574852 FORWARD LENGTH=795;; (*ITAG) Solyc04g082120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63497736-63502187 transcript_region:SL2.40ch04:63497736..63502187+ go_terms:GO:0004252,GO:0070012 functional_description:"Prolyl endopeptidase (AHRD V1 **** B6U134_MAIZE); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0004252,GO:0070012 NbS00020869g0016.1 protein AED:0.38 eAED:0.51 QI:0|0|0.5|1|0|0|2|355|58 NbS00020869g0007.1 protein AED:0.83 eAED:0.82 QI:32|0|0|0.5|1|0.5|2|0|58 NbS00010201g0020.1 protein AED:0.17 eAED:0.22 QI:0|0.70|0.68|1|0.72|0.71|38|330|2530; (*SWP) sp|Q2PCF1|PDR2_NICPL (e_value=0.0) Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1;; (*TAIR) AT2G36380.1 (e_value=0.0) | Symbols: PDR6, ATPDR6 | pleiotropic drug resistance 6 | chr2:15257583-15263627 FORWARD LENGTH=1453;; (*ITAG) Solyc11g007280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1662486-1669042 transcript_region:SL2.40ch11:1662486..1669042+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8S2N3_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00010201g0028.1 protein AED:0.31 eAED:0.33 QI:0|0.87|0.94|1|0.81|0.94|17|198|520; (*SWP) sp|A8JAM0|CC135_CHLRE (e_value=4e-20) Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1;; (*TAIR) AT2G36360.2 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:15243461-15247523 REVERSE LENGTH=496;; (*ITAG) Solyc11g007320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1694547-1705386 transcript_region:SL2.40ch11:1694547..1705386+ go_terms:GO:0005515 functional_description:"Kelch domain-containing protein 1 (AHRD V1 *--- KLDC1_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00010201g0023.1 protein AED:0.06 eAED:0.06 QI:183|1|1|1|1|1|4|309|161; (*TAIR) AT3G52900.1 (e_value=1e-52) | Symbols: | Family of unknown function (DUF662) | chr3:19613134-19613852 FORWARD LENGTH=164;; (*ITAG) Solyc11g007330.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1706049-1707943 transcript_region:SL2.40ch11:1706049..1707943- functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00010201g0005.1 protein AED:0.06 eAED:0.06 QI:598|1|1|1|0.25|0.2|5|746|766; (*ITAG) Solyc11g007310.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1687611-1693149 transcript_region:SL2.40ch11:1687611..1693149- functional_description:"Genomic DNA chromosome 3 P1 clone MCB17 (AHRD V1 *-*- Q9LUV5_ARATH)"; NbS00010201g0029.1 protein AED:0.26 eAED:0.63 QI:0|0|0|1|0|0|2|0|77 NbS00044763g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|314; (*SWP) sp|Q3E9A4|GLYT5_ARATH (e_value=2e-124) Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3;; (*TAIR) AT5G20260.1 (e_value=1e-125) | Symbols: | Exostosin family protein | chr5:6836806-6839532 REVERSE LENGTH=458;; (*ITAG) Solyc12g019050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9004310-9005978 transcript_region:SL2.40ch12:9004310..9005978+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M8_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00048869g0002.1 protein AED:0.09 eAED:0.09 QI:72|1|1|1|0|0|3|28|237; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=7e-72) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=2e-72) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc05g055030.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63949290-63951195 transcript_region:SL2.40ch05:63949290..63951195- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbC24960250g0001.1 protein AED:0.00 eAED:0.00 QI:51|-1|1|1|-1|1|1|0|198 NbS00024548g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|0|0|3|0|235; (*TAIR) AT5G42570.1 (e_value=1e-88) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc02g032930.2.1 (e_value=4e-132) genomic_reference:SL2.40ch02 gene_region:20179350-20185331 transcript_region:SL2.40ch02:20179350..20185331+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00005330g0012.1 protein AED:0.09 eAED:0.10 QI:0|1|0.75|1|0.33|0.25|4|0|221; (*TAIR) AT1G29000.1 (e_value=1e-43) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:10113018-10114340 FORWARD LENGTH=287;; (*ITAG) Solyc10g039390.1.1 (e_value=1e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:21569858-21572046 transcript_region:SL2.40ch10:21569858..21572046- go_terms:GO:0030001 functional_description:"ATFP3 (Fragment) (AHRD V1 **-- Q9ZRE7_ARATH); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00005330g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.4|0.16|0.83|0.6|0.66|6|0|573; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc10g024490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:14779518-14782394 transcript_region:SL2.40ch10:14779518..14782394- go_terms:GO:0042936,GO:0015112 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936,GO:0015112 NbS00038230g0004.1 protein AED:0.00 eAED:0.00 QI:55|1|0.6|1|0.5|0.6|5|0|175; (*SWP) sp|Q9NG98|TOP3A_DROME (e_value=5e-45) DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha PE=2 SV=2;; (*TAIR) AT5G63920.1 (e_value=7e-88) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926;; (*ITAG) Solyc05g014740.1.1 (e_value=9e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8877537-8884992 transcript_region:SL2.40ch05:8877537..8884992- go_terms:GO:0005694 functional_description:"DNA topoisomerase (AHRD V1 *-*- B9H4K8_POPTR); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0005694 NbS00036586g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0.33|0.66|1|1|3|0|558; (*SWP) sp|Q9SGN7|CCR12_ARATH (e_value=2e-122) Serine/threonine-protein kinase-like protein At1g28390 OS=Arabidopsis thaliana GN=At1g28390 PE=2 SV=1;; (*TAIR) AT1G28390.1 (e_value=2e-123) | Symbols: | Protein kinase superfamily protein | chr1:9966814-9968226 REVERSE LENGTH=470;; (*ITAG) Solyc04g075000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58491650-58493140 transcript_region:SL2.40ch04:58491650..58493140- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C6ZRN1_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00054656g0004.1 protein AED:0.21 eAED:0.21 QI:236|1|1|1|0|0|3|134|24 NbS00054656g0005.1 protein AED:0.40 eAED:0.61 QI:0|0.2|0.16|1|0|0.33|6|345|157 NbS00054656g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.2|1|1|5|0|440; (*ITAG) Solyc11g039800.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005171g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|161; (*SWP) sp|P33080|AX10A_SOYBN (e_value=3e-18) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=9e-44) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc01g091030.2.1 (e_value=5e-93) genomic_reference:SL2.40ch01 gene_region:76507949-76509039 transcript_region:SL2.40ch01:76507949..76509039+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LRT5_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00028401g0006.1 protein AED:0.28 eAED:0.28 QI:273|0.76|0.71|1|0.92|0.85|14|18|557; (*SWP) sp|Q9SVE7|MATE3_ARATH (e_value=5e-129) MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2;; (*TAIR) AT4G38380.1 (e_value=4e-130) | Symbols: | MATE efflux family protein | chr4:17971855-17974787 REVERSE LENGTH=560;; (*ITAG) Solyc01g112090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89954210-89962191 transcript_region:SL2.40ch01:89954210..89962191+ go_terms:GO:0016020 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q2QYU0_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00031880g0005.1 protein AED:0.22 eAED:0.26 QI:0|0|0|1|0.33|0.5|4|0|481; (*TAIR) AT2G36420.1 (e_value=3e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03670.1); Has 10588 Blast hits to 6606 proteins in 440 species: Archae - 8; Bacteria - 365; Metazoa - 4146; Fungi - 1198; Plants - 483; Viruses - 212; Other Eukaryotes - 4176 (source: NCBI BLink). | chr2:15286498-15288990 FORWARD LENGTH=439;; (*ITAG) Solyc09g009220.2.1 (e_value=3e-147) genomic_reference:SL2.40ch09 gene_region:2593727-2598249 transcript_region:SL2.40ch09:2593727..2598249- functional_description:"Unknown Protein (AHRD V1)"; NbS00020754g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|1|1|2|0|308; (*TAIR) AT4G35070.1 (e_value=6e-41) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:16694488-16695387 FORWARD LENGTH=265;; (*ITAG) Solyc01g111610.2.1 (e_value=9e-80) genomic_reference:SL2.40ch01 gene_region:89593868-89594786 transcript_region:SL2.40ch01:89593868..89594786+ functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY)"; NbS00020754g0007.1 protein AED:0.01 eAED:0.01 QI:226|1|1|1|0|1|2|315|390; (*TAIR) AT2G16800.1 (e_value=5e-117) | Symbols: | high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372;; (*ITAG) Solyc01g111620.2.1 (e_value=5e-167) genomic_reference:SL2.40ch01 gene_region:89600618-89604371 transcript_region:SL2.40ch01:89600618..89604371- go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00020754g0001.1 protein AED:0.30 eAED:0.62 QI:0|-1|0|1|-1|1|1|0|123 NbS00015781g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|330; (*TAIR) AT4G19950.1 (e_value=2e-99) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809977-10810942 FORWARD LENGTH=321;; (*ITAG) Solyc01g080910.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:72759939-72761213 transcript_region:SL2.40ch01:72759939..72761213+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004851g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|136; (*SWP) sp|Q9LN49|KCS4_ARATH (e_value=2e-72) 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1;; (*TAIR) AT1G19440.1 (e_value=1e-73) | Symbols: KCS4 | 3-ketoacyl-CoA synthase 4 | chr1:6729119-6730669 FORWARD LENGTH=516;; (*ITAG) Solyc04g080450.1.1 (e_value=3e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00004851g0001.1 protein AED:0.39 eAED:0.48 QI:0|0|0|1|0|0|2|0|105; (*SWP) sp|Q9SIX1|KCS9_ARATH (e_value=3e-16) 3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1;; (*TAIR) AT2G16280.1 (e_value=3e-17) | Symbols: KCS9 | 3-ketoacyl-CoA synthase 9 | chr2:7051186-7052724 FORWARD LENGTH=512;; (*ITAG) Solyc04g080450.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62219563-62221116 transcript_region:SL2.40ch04:62219563..62221116+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00019296g0006.1 protein AED:0.02 eAED:0.03 QI:0|0.6|0.45|1|0.9|0.72|11|0|2223; (*TAIR) AT4G13750.1 (e_value=0.0) | Symbols: NOV | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:7975191-7987558 FORWARD LENGTH=2729;; (*ITAG) Solyc09g092100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66589275-66608601 transcript_region:SL2.40ch09:66589275..66608601+ go_terms:GO:0005524 functional_description:"Predicted CDS Pa_5_8110 (Fragment) (AHRD V1 *--- B2AKK2_PODAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00005466g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|501; (*SWP) sp|O64900|C80B2_ESCCA (e_value=1e-129) (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1;; (*TAIR) AT2G45570.1 (e_value=6e-107) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc06g035760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21596705-21598492 transcript_region:SL2.40ch06:21596705..21598492+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005466g0207.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|0|650 NbS00005466g0202.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|105 NbS00005466g0208.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.6|1|0.25|0.4|5|115|323 NbS00011671g0004.1 protein AED:0.17 eAED:0.19 QI:0|0.77|0.73|1|0.66|0.63|19|315|707; (*SWP) sp|Q9XGM2|MRE11_ARATH (e_value=0.0) Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1;; (*TAIR) AT5G54260.1 (e_value=0.0) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720;; (*ITAG) Solyc09g009340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00023858g0005.1 protein AED:0.00 eAED:0.00 QI:123|1|1|1|1|1|2|142|247; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=3e-17) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G09950.1 (e_value=3e-37) | Symbols: RAS1 | RESPONSE TO ABA AND SALT 1 | chr1:3240849-3241541 REVERSE LENGTH=230;; (*ITAG) Solyc10g085210.1.1 (e_value=1e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63805656-63807219 transcript_region:SL2.40ch10:63805656..63807219- functional_description:"BZIP family transcription factor (AHRD V1 ***- D7LZU5_ARALY)"; NbS00023008g0001.1 protein AED:0.36 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|234; (*ITAG) Solyc05g023850.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29603236-29604099 transcript_region:SL2.40ch05:29603236..29604099- functional_description:"Gag-pol polyprotein (AHRD V1 ***- Q710T7_POPDE)"; NbS00006443g0009.1 protein AED:0.22 eAED:0.22 QI:140|1|1|1|1|1|4|346|219; (*SWP) sp|P93847|RL10_SOLME (e_value=2e-158) 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=1e-144) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=5e-162) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00006443g0002.1 protein AED:0.01 eAED:0.01 QI:223|1|1|1|0.85|0.75|8|227|295; (*SWP) sp|Q9FHB2|Y5828_ARATH (e_value=5e-68) Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana GN=At5g58280 PE=3 SV=1;; (*TAIR) AT5G58280.1 (e_value=4e-69) | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:23567338-23568670 FORWARD LENGTH=273;; (*ITAG) Solyc06g007530.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:1515845-1518702 transcript_region:SL2.40ch06:1515845..1518702- go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os05g0481400 (AHRD V1 ***- Y5814_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00006443g0008.1 protein AED:0.27 eAED:0.27 QI:130|1|1|1|0|0|2|383|72; (*SWP) sp|P46269|QCR8_SOLTU (e_value=3e-44) Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G05370.1 (e_value=1e-41) | Symbols: | Cytochrome b-c1 complex, subunit 8 protein | chr5:1590977-1591869 REVERSE LENGTH=72;; (*ITAG) Solyc06g082680.2.1 (e_value=1e-45) genomic_reference:SL2.40ch06 gene_region:44715736-44718295 transcript_region:SL2.40ch06:44715736..44718295- go_terms:GO:0008121 functional_description:"Cytochrome b-c1 complex subunit 8 (AHRD V1 **** D6BQP2_9ROSI); contains Interpro domain(s) IPR020101 Cytochrome b-c1 complex, subunit 8 "; GO:0008121 NbS00005084g0015.1 protein AED:0.02 eAED:0.02 QI:0|0.77|0.4|1|0.66|0.9|10|322|1761; (*SWP) sp|Q76E23|IF4G1_ARATH (e_value=0.0) Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2;; (*TAIR) AT3G60240.3 (e_value=0.0) | Symbols: EIF4G, CUM2 | eukaryotic translation initiation factor 4G | chr3:22261842-22268295 FORWARD LENGTH=1725;; (*ITAG) Solyc08g077700.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58770890-58780639 transcript_region:SL2.40ch08:58770890..58780639+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 gamma 1 (AHRD V1 *-*- A9QXE6_MESAU); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00005084g0014.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0.14|0|8|0|702; (*SWP) sp|O23553|BAM3_ARATH (e_value=0.0) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=0.0) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g077530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58684261-58687653 transcript_region:SL2.40ch08:58684261..58687653+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q5F305_SOYBN); contains Interpro domain(s) IPR001371 Glycoside hydrolase, family 14B, plant "; GO:0016161 NbS00014417g0002.1 protein AED:0.17 eAED:0.17 QI:54|0.66|0.75|1|0|0.25|4|2069|155; (*SWP) sp|Q944B0|FK161_ARATH (e_value=4e-28) Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1;; (*TAIR) AT4G26555.1 (e_value=3e-29) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr4:13404622-13406178 REVERSE LENGTH=207;; (*ITAG) Solyc10g005870.2.1 (e_value=8e-55) genomic_reference:SL2.40ch10 gene_region:665953-671107 transcript_region:SL2.40ch10:665953..671107+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q7V0G6_PROMP); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00017089g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|0.83|0.85|7|1074|266; (*SWP) sp|O82531|PSB1_PETHY (e_value=4e-158) Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1;; (*TAIR) AT3G60820.3 (e_value=7e-141) | Symbols: PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:22472038-22473809 REVERSE LENGTH=223;; (*ITAG) Solyc02g084920.2.1 (e_value=2e-157) genomic_reference:SL2.40ch02 gene_region:42548635-42554662 transcript_region:SL2.40ch02:42548635..42554662- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SY64_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00017089g0019.1 protein AED:0.06 eAED:0.06 QI:242|1|0.9|1|0.77|0.9|10|3850|754; (*SWP) sp|P55607|Y4OV_RHISN (e_value=2e-88) Uncharacterized protein y4oV OS=Rhizobium sp. (strain NGR234) GN=NGR_a02140 PE=4 SV=1;; (*TAIR) AT5G66420.2 (e_value=0.0) | Symbols: | LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr5:26521893-26524986 REVERSE LENGTH=754;; (*ITAG) Solyc02g062560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28856001-28864037 transcript_region:SL2.40ch02:28856001..28864037- go_terms:GO:0005975 functional_description:"TIM-barrel enzyme family protein (AHRD V1 *--- C5JTT1_AJEDS); contains Interpro domain(s) IPR008322 Uncharacterised conserved protein UCP033271 IPR009215 TIM-barrel signal transduction protein, predicted IPR018087 Glycoside hydrolase, family 5, conserved site "; GO:0005975 NbS00017089g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.66|1|1|1|3|56|445; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=2e-28) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT5G17760.1 (e_value=3e-139) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:5860591-5862301 REVERSE LENGTH=505;; (*ITAG) Solyc02g084910.2.1 (e_value=2e-176) genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00000465g0005.1 protein AED:0.09 eAED:0.09 QI:836|0.4|0.33|0.5|0.6|0.5|6|0|180; (*SWP) sp|Q75VR1|TPC1A_TOBAC (e_value=3e-55) Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=6e-39) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=1e-50) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00059061g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|429; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=0.0) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00044845g0005.1 protein AED:0.25 eAED:0.25 QI:194|0.77|0.7|1|0.88|0.9|10|349|656; (*SWP) sp|Q6NLC1|AB2D_ARATH (e_value=0.0) ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1;; (*TAIR) AT1G54350.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr1:20286917-20290245 FORWARD LENGTH=706;; (*ITAG) Solyc12g017420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6679700-6689033 transcript_region:SL2.40ch12:6679700..6689033+ go_terms:GO:0016020,GO:0017111,GO:0016887,GO:0016021 functional_description:"ATP-binding protein of ABC transporter (AHRD V1 ***- D8G8L5_9CYAN); contains Interpro domain(s) IPR010509 ABC transporter, N-terminal "; GO:0016020,GO:0017111,GO:0016887,GO:0016021 NbS00046820g0005.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0.33|0.25|4|0|335; (*SWP) sp|Q8YRI1|YY46_NOSS1 (e_value=3e-15) Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1;; (*TAIR) AT2G26490.1 (e_value=7e-55) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:11268035-11269432 FORWARD LENGTH=465;; (*ITAG) Solyc12g044320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44684080-44686711 transcript_region:SL2.40ch12:44684080..44686711+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- Q1EPE0_MUSAC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00016618g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.90|1|1|1|11|0|770; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=4e-36) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT4G22120.6 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771;; (*ITAG) Solyc02g036260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21172510-21179750 transcript_region:SL2.40ch02:21172510..21179750- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C2G11.09 (AHRD V1 **-- YAB9_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00021769g0017.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|712; (*SWP) sp|Q8RWD6|FB271_ARATH (e_value=8e-150) F-box protein At5g39450 OS=Arabidopsis thaliana GN=At5g39450 PE=2 SV=1;; (*TAIR) AT5G39450.1 (e_value=6e-151) | Symbols: | F-box family protein | chr5:15786045-15787877 FORWARD LENGTH=579;; (*ITAG) Solyc04g076520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58997185-58999071 transcript_region:SL2.40ch04:58997185..58999071- functional_description:"F-box family protein (AHRD V1 ***- D7MJL3_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021769g0007.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|126 NbS00021769g0021.1 protein AED:0.07 eAED:0.07 QI:292|1|1|1|1|1|9|340|387; (*SWP) sp|Q6D2F1|ARNA_ERWCT (e_value=7e-69) Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1;; (*TAIR) AT1G08200.1 (e_value=0.0) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc01g009420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3621816-3626739 transcript_region:SL2.40ch01:3621816..3626739+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0044237,GO:0008152 NbS00021769g0023.1 protein AED:0.12 eAED:0.14 QI:0|0.92|0.86|1|1|1|15|550|576; (*SWP) sp|Q969V3|NCLN_HUMAN (e_value=1e-56) Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2;; (*TAIR) AT3G44330.1 (e_value=0.0) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc01g009380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3572360-3591567 transcript_region:SL2.40ch01:3572360..3591567+ go_terms:GO:0005515 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0005515 NbS00021769g0006.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|228; (*SWP) sp|Q9FMR0|PER60_ARATH (e_value=2e-38) Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1;; (*TAIR) AT5G22410.1 (e_value=1e-39) | Symbols: RHS18 | root hair specific 18 | chr5:7426347-7427722 FORWARD LENGTH=331;; (*ITAG) Solyc01g009410.2.1 (e_value=2e-60) genomic_reference:SL2.40ch01 gene_region:3612087-3615594 transcript_region:SL2.40ch01:3612087..3615594+ go_terms:GO:0004601 functional_description:"Peroxidase 57 (AHRD V1 **** D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00021769g0011.1 protein AED:0.41 eAED:0.61 QI:0|0|0|1|1|1|4|0|188; (*TAIR) AT1G17250.1 (e_value=1e-15) | Symbols: AtRLP3, RLP3 | receptor like protein 3 | chr1:5901169-5903439 REVERSE LENGTH=756;; (*ITAG) Solyc07g008630.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00021769g0027.1 protein AED:0.45 eAED:0.88 QI:0|0|0|1|0|0|2|0|98; (*ITAG) Solyc02g068540.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33072798-33074500 transcript_region:SL2.40ch02:33072798..33074500+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00034082g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|0.66|0.5|0.33|3|0|130; (*SWP) sp|O14046|VATO_SCHPO (e_value=2e-28) Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=2 SV=1;; (*TAIR) AT2G25610.1 (e_value=4e-60) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr2:10901585-10902494 REVERSE LENGTH=178;; (*ITAG) Solyc06g067880.2.1 (e_value=5e-65) genomic_reference:SL2.40ch06 gene_region:38458796-38460935 transcript_region:SL2.40ch06:38458796..38460935+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00010566g0007.1 protein AED:0.03 eAED:0.03 QI:130|1|1|1|1|1|2|1628|233; (*TAIR) AT3G26510.4 (e_value=6e-48) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc05g013530.2.1 (e_value=2e-62) genomic_reference:SL2.40ch05 gene_region:6766537-6768182 transcript_region:SL2.40ch05:6766537..6768182+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00010912g0005.1 protein AED:0.21 eAED:0.21 QI:58|1|0.66|1|1|1|3|0|290; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=8e-109) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G19000.2 (e_value=2e-50) | Symbols: | Homeodomain-like superfamily protein | chr1:6561335-6562684 REVERSE LENGTH=285;; (*ITAG) Solyc06g071230.2.1 (e_value=1e-107) genomic_reference:SL2.40ch06 gene_region:40203584-40206006 transcript_region:SL2.40ch06:40203584..40206006- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** A1DR86_CATRO); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003700 NbS00021372g0004.1 protein AED:0.19 eAED:0.19 QI:282|0.75|0.6|1|0.5|0.6|5|0|553; (*SWP) sp|Q9LVE0|PTR33_ARATH (e_value=0.0) Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1;; (*TAIR) AT3G21670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:7626942-7628954 REVERSE LENGTH=590;; (*ITAG) Solyc07g049290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56866773-56869777 transcript_region:SL2.40ch07:56866773..56869777- go_terms:GO:0042937,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00032699g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|96; (*TAIR) AT1G35580.3 (e_value=3e-31) | Symbols: CINV1 | cytosolic invertase 1 | chr1:13123183-13124808 REVERSE LENGTH=460;; (*ITAG) Solyc01g111100.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:89238272-89243370 transcript_region:SL2.40ch01:89238272..89243370- go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00031112g0004.1 protein AED:0.47 eAED:0.84 QI:0|0|0|1|1|1|2|0|81 NbS00019370g0006.1 protein AED:0.10 eAED:0.13 QI:223|0.68|0.58|1|0.56|0.52|17|0|1194; (*SWP) sp|Q5D869|NRPE1_ARATH (e_value=0.0) DNA-directed RNA polymerase E subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1;; (*TAIR) AT2G40030.1 (e_value=0.0) | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976;; (*ITAG) Solyc01g096390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79236257-79259834 transcript_region:SL2.40ch01:79236257..79259834+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- D7LEE8_ARALY); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0006350 NbS00040704g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|0.75|0.33|0.5|4|0|139; (*SWP) sp|O80626|RL352_ARATH (e_value=5e-40) 60S ribosomal protein L35-2 OS=Arabidopsis thaliana GN=RPL35B PE=2 SV=1;; (*TAIR) AT2G39390.1 (e_value=4e-41) | Symbols: | Ribosomal L29 family protein | chr2:16450803-16451762 REVERSE LENGTH=123;; (*ITAG) Solyc05g054810.2.1 (e_value=5e-43) genomic_reference:SL2.40ch05 gene_region:63775298-63777437 transcript_region:SL2.40ch05:63775298..63777437+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00040704g0007.1 protein AED:0.28 eAED:0.30 QI:160|0.16|0.42|1|0.5|0.71|7|283|237; (*SWP) sp|Q9C8G4|PLY4_ARATH (e_value=2e-22) Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1;; (*TAIR) AT3G55140.1 (e_value=3e-108) | Symbols: | Pectin lyase-like superfamily protein | chr3:20438819-20440225 FORWARD LENGTH=331;; (*ITAG) Solyc04g010230.2.1 (e_value=3e-122) genomic_reference:SL2.40ch04 gene_region:3556402-3561755 transcript_region:SL2.40ch04:3556402..3561755+ go_terms:GO:0030570 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LV13_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0030570 NbC24668437g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|0.5|2|0|84; (*SWP) sp|P43284|TRPB2_MAIZE (e_value=1e-35) Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1;; (*TAIR) AT5G54810.1 (e_value=2e-36) | Symbols: TSB1, TRPB, TRP2, ATTSB1 | tryptophan synthase beta-subunit 1 | chr5:22264805-22266738 REVERSE LENGTH=470;; (*ITAG) Solyc10g005320.2.1 (e_value=8e-46) genomic_reference:SL2.40ch10 gene_region:234474-236768 transcript_region:SL2.40ch10:234474..236768+ go_terms:GO:0004834 functional_description:"Tryptophan synthase beta chain 1 (AHRD V1 **** Q0WUI8_ARATH); contains Interpro domain(s) IPR006654 Tryptophan synthase, beta chain "; GO:0004834 NbS00013344g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.42|1|0.83|0.85|7|0|702; (*TAIR) AT3G01680.1 (e_value=1e-173) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740;; (*ITAG) Solyc03g111810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56481370-56484394 transcript_region:SL2.40ch03:56481370..56484394- functional_description:"Sieve element-occluding protein 3 (AHRD V1 **-- B5THF7_MEDTR)"; NbS00013344g0009.1 protein AED:0.27 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|307; (*SWP) sp|P19683|ROC4_NICSY (e_value=2e-167) 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G24770.1 (e_value=1e-77) | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA binding protein | chr4:12766223-12767952 REVERSE LENGTH=329;; (*ITAG) Solyc03g111840.2.1 (e_value=6e-109) genomic_reference:SL2.40ch03 gene_region:56501989-56506255 transcript_region:SL2.40ch03:56501989..56506255- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 **-- PAP1L_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00004587g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|259; (*SWP) sp|P31244|RAD16_YEAST (e_value=1e-17) DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1;; (*TAIR) AT1G05120.1 (e_value=2e-47) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc07g052100.2.1 (e_value=1e-73) genomic_reference:SL2.40ch07 gene_region:57966277-57974077 transcript_region:SL2.40ch07:57966277..57974077+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00033489g0012.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|0|0.33|3|0|205; (*SWP) sp|P81898|PNAA_PRUDU (e_value=7e-41) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=6e-33) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc10g007330.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1729750-1731516 transcript_region:SL2.40ch10:1729750..1731516- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- C0NA72_AJECG)"; NbS00033489g0008.1 protein AED:0.13 eAED:0.13 QI:183|1|1|1|1|1|6|13|454; (*TAIR) AT1G78810.1 (e_value=2e-24) | Symbols: | unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:29628538-29630510 REVERSE LENGTH=481;; (*ITAG) Solyc10g007340.2.1 (e_value=4e-154) genomic_reference:SL2.40ch10 gene_region:1732868-1739713 transcript_region:SL2.40ch10:1732868..1739713+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033489g0009.1 protein AED:0.28 eAED:0.28 QI:204|1|1|1|0.5|0.4|5|700|139; (*SWP) sp|Q9LXT3|MBF1B_ARATH (e_value=3e-67) Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1;; (*TAIR) AT3G58680.1 (e_value=3e-68) | Symbols: MBF1B, ATMBF1B | multiprotein bridging factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142;; (*ITAG) Solyc10g007350.2.1 (e_value=7e-80) genomic_reference:SL2.40ch10 gene_region:1740404-1747481 transcript_region:SL2.40ch10:1740404..1747481+ go_terms:GO:0003713 functional_description:"Multiprotein bridging factor 1 (AHRD V1 ***- Q9LL86_SOLTU); contains Interpro domain(s) IPR013729 Multiprotein bridging factor 1, N-terminal "; GO:0003713 NbS00033489g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0|0|2|0|109; (*SWP) sp|P81898|PNAA_PRUDU (e_value=5e-39) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=2e-39) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc10g007330.1.1 (e_value=9e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1729750-1731516 transcript_region:SL2.40ch10:1729750..1731516- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- C0NA72_AJECG)"; NbS00024164g0008.1 protein AED:0.10 eAED:0.12 QI:0|0.75|0.4|1|1|1|5|0|462; (*SWP) sp|P42730|CLPB1_ARATH (e_value=0.0) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT1G74310.1 (e_value=0.0) | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911;; (*ITAG) Solyc03g115230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59065016-59069171 transcript_region:SL2.40ch03:59065016..59069171- go_terms:GO:0019538,GO:0005524,GO:0017111 functional_description:"ClpB chaperone (AHRD V1 ***- D6QXI5_TRYCR); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111 NbS00024164g0015.1 protein AED:0.13 eAED:0.13 QI:314|0.83|0.85|1|0.16|0.42|7|270|328; (*TAIR) AT3G05010.1 (e_value=9e-105) | Symbols: | Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300;; (*ITAG) Solyc06g069490.2.1 (e_value=2e-163) genomic_reference:SL2.40ch06 gene_region:39647267-39651761 transcript_region:SL2.40ch06:39647267..39651761- functional_description:"Transmembrane protein adipocyte-associated 1 homolog (AHRD V1 ***- TPRA1_CHICK); contains Interpro domain(s) IPR018781 Protein of unknown function, transmembrane-40 "; NbS00024164g0017.1 protein AED:0.39 eAED:0.39 QI:54|0.71|0.62|0.87|0.71|0.62|8|0|236; (*TAIR) AT5G07950.1 (e_value=4e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540530-2542047 REVERSE LENGTH=303;; (*ITAG) Solyc06g069510.2.1 (e_value=6e-118) genomic_reference:SL2.40ch06 gene_region:39676146-39681903 transcript_region:SL2.40ch06:39676146..39681903- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 ***- Q9SD89_ARATH)"; NbS00024164g0012.1 protein AED:0.05 eAED:0.05 QI:702|0.9|0.72|1|0.6|0.63|11|871|1850; (*TAIR) AT5G07980.1 (e_value=2e-55) | Symbols: | dentin sialophosphoprotein-related | chr5:2549432-2554669 REVERSE LENGTH=1501;; (*ITAG) Solyc06g069500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39664520-39673451 transcript_region:SL2.40ch06:39664520..39673451+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00038253g0014.1 protein AED:0.29 eAED:0.30 QI:0|1|0.83|1|1|1|12|0|561; (*SWP) sp|Q9LYU8|AK1_ARATH (e_value=0.0) Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1;; (*TAIR) AT5G13280.1 (e_value=0.0) | Symbols: AK-LYS1, AK1, AK | aspartate kinase 1 | chr5:4249516-4252654 FORWARD LENGTH=569;; (*ITAG) Solyc01g005240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:185714-191685 transcript_region:SL2.40ch01:185714..191685+ go_terms:GO:0008652,GO:0008152 functional_description:"Aspartokinase (AHRD V1 ***- B9RGY9_RICCO); contains Interpro domain(s) IPR001341 Aspartate kinase region "; GO:0008652,GO:0008152 NbS00038253g0005.1 protein AED:0.32 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|327; (*SWP) sp|Q9LS10|MT810_ARATH (e_value=1e-54) Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1;; (*TAIR) AT1G68040.1 (e_value=1e-69) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:25502876-25505224 FORWARD LENGTH=363;; (*ITAG) Solyc01g005360.2.1 (e_value=8e-67) genomic_reference:SL2.40ch01 gene_region:257315-258835 transcript_region:SL2.40ch01:257315..258835+ go_terms:GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** A7XZE9_9MAGN); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00038253g0021.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.66|0.5|0.33|3|0|385; (*SWP) sp|F4J9Q6|FKB43_ARATH (e_value=3e-16) Peptidyl-prolyl cis-trans isomerase FKBP43 OS=Arabidopsis thaliana GN=FKBP43 PE=2 SV=1;; (*TAIR) AT3G12340.1 (e_value=2e-17) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3925720-3929346 REVERSE LENGTH=499;; (*ITAG) Solyc03g007170.2.1 (e_value=1e-108) genomic_reference:SL2.40ch03 gene_region:1743953-1748364 transcript_region:SL2.40ch03:1743953..1748364- go_terms:GO:0005528 functional_description:"FK506-binding protein 4 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 *-** C8V696_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00038253g0015.1 protein AED:0.11 eAED:0.11 QI:0|1|0.87|1|0.85|0.75|8|453|344; (*SWP) sp|Q55512|DHAS_SYNY3 (e_value=6e-103) Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asd PE=3 SV=2;; (*TAIR) AT1G14810.1 (e_value=0.0) | Symbols: | semialdehyde dehydrogenase family protein | chr1:5102684-5104633 REVERSE LENGTH=375;; (*ITAG) Solyc01g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:191856-195078 transcript_region:SL2.40ch01:191856..195078- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Aspartate-semialdehyde dehydrogenase (AHRD V1 ***- B6TWW1_MAIZE); contains Interpro domain(s) IPR005986 Aspartate-semialdehyde dehydrogenase, bacterial "; GO:0008152,GO:0005737,GO:0055114 NbS00038253g0020.1 protein AED:0.23 eAED:0.23 QI:212|0.75|0.8|1|0.75|0.8|5|300|224; (*TAIR) AT1G14820.3 (e_value=2e-100) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:5105237-5106793 REVERSE LENGTH=252;; (*ITAG) Solyc01g005270.2.1 (e_value=7e-132) genomic_reference:SL2.40ch01 gene_region:199896-203454 transcript_region:SL2.40ch01:199896..203454- go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7M8H6_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00016333g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|418 NbS00016333g0107.1 protein AED:0.46 eAED:0.49 QI:342|0.66|0.5|1|0|0|4|0|46 NbS00001548g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|202; (*SWP) sp|P0CG89|H4_SOYBN (e_value=2e-50) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=2e-51) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=1e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00040712g0012.1 protein AED:0.13 eAED:0.13 QI:128|1|1|1|1|1|4|241|203; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=5e-59) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT5G58800.2 (e_value=6e-116) | Symbols: | Quinone reductase family protein | chr5:23746032-23746895 REVERSE LENGTH=207;; (*ITAG) Solyc06g076880.2.1 (e_value=2e-140) genomic_reference:SL2.40ch06 gene_region:44165771-44168095 transcript_region:SL2.40ch06:44165771..44168095+ go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6T4R2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00040712g0009.1 protein AED:0.02 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|310; (*SWP) sp|Q84XV2|GTE1_ARATH (e_value=3e-72) Transcription factor GTE1 OS=Arabidopsis thaliana GN=GTE1 PE=2 SV=1;; (*TAIR) AT2G34900.1 (e_value=3e-73) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386;; (*ITAG) Solyc09g090370.2.1 (e_value=2e-140) genomic_reference:SL2.40ch09 gene_region:65243091-65247723 transcript_region:SL2.40ch09:65243091..65247723+ go_terms:GO:0003677,GO:0004402 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677,GO:0004402 NbS00040712g0011.1 protein AED:0.44 eAED:0.49 QI:0|0|0|1|1|1|2|0|100; (*SWP) sp|O82380|PP175_ARATH (e_value=1e-18) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=9e-20) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00040712g0020.1 protein AED:0.06 eAED:0.06 QI:567|1|0.5|1|1|0.5|2|0|1104; (*SWP) sp|Q9SHI2|Y1723_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2;; (*TAIR) AT1G17230.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:5891375-5894855 FORWARD LENGTH=1101;; (*ITAG) Solyc07g056410.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61592602-61596698 transcript_region:SL2.40ch07:61592602..61596698- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00040712g0021.1 protein AED:0.42 eAED:0.80 QI:0|0|0|0.66|0|0.33|3|0|101 NbS00040712g0019.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|3|0|212; (*SWP) sp|O82380|PP175_ARATH (e_value=9e-53) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=7e-54) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=2e-84) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00040712g0016.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0|0|2|0|145; (*SWP) sp|O82380|PP175_ARATH (e_value=1e-32) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=8e-34) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=6e-45) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00040712g0017.1 protein AED:0.45 eAED:0.57 QI:0|0|0|1|0|0|2|0|87; (*SWP) sp|O82380|PP175_ARATH (e_value=1e-18) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=8e-20) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc06g076900.2.1 (e_value=2e-29) genomic_reference:SL2.40ch06 gene_region:44169276-44176128 transcript_region:SL2.40ch06:44169276..44176128+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010367g0008.1 protein AED:0.17 eAED:0.17 QI:475|0.8|0.66|1|0.6|0.5|6|0|760; (*TAIR) AT2G17550.1 (e_value=7e-106) | Symbols: | unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | chr2:7634495-7637212 REVERSE LENGTH=779;; (*ITAG) Solyc02g082680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40902205-40907678 transcript_region:SL2.40ch02:40902205..40907678- functional_description:"Unknown Protein (AHRD V1)"; NbS00010367g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|251; (*TAIR) AT2G17550.2 (e_value=4e-32) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 215 Blast hits to 205 proteins in 55 species: Archae - 5; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 99; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr2:7634495-7636770 REVERSE LENGTH=705;; (*ITAG) Solyc02g082680.2.1 (e_value=2e-117) genomic_reference:SL2.40ch02 gene_region:40902205-40907678 transcript_region:SL2.40ch02:40902205..40907678- functional_description:"Unknown Protein (AHRD V1)"; NbS00022185g0007.1 protein AED:0.30 eAED:0.30 QI:130|0.9|0.90|1|0.7|0.54|11|231|424; (*SWP) sp|Q8L5Y9|PANK2_ARATH (e_value=2e-158) Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2;; (*TAIR) AT4G32180.3 (e_value=2e-161) | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 | chr4:15538340-15543715 REVERSE LENGTH=783;; (*ITAG) Solyc05g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:195242-204180 transcript_region:SL2.40ch05:195242..204180+ go_terms:GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 **** C1MLQ0_MICPS); contains Interpro domain(s) IPR004567 Eukaryotic pantothenate kinase IPR011602 Fumble "; GO:0004594 NbS00022185g0006.1 protein AED:0.28 eAED:0.28 QI:629|0.5|0.4|0.8|0.75|0.6|5|0|207 NbS00005032g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0.75|0.6|5|0|908; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=3e-128) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=3e-51) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00005032g0102.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|142 NbS00035901g0001.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.25|1|1|4|0|248; (*SWP) sp|Q9FJ90|ERF25_ARATH (e_value=1e-28) Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1;; (*TAIR) AT5G52020.1 (e_value=8e-30) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:21124192-21124890 REVERSE LENGTH=232;; (*ITAG) Solyc06g035700.1.1 (e_value=1e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:21428094-21428630 transcript_region:SL2.40ch06:21428094..21428630- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00043743g0004.1 protein AED:0.34 eAED:0.34 QI:0|0.4|0.16|0.66|0.4|0.33|6|0|337; (*SWP) sp|O81782|REM6_ARATH (e_value=3e-27) B3 domain-containing protein REM6 OS=Arabidopsis thaliana GN=REM6 PE=2 SV=1;; (*TAIR) AT4G31650.1 (e_value=3e-28) | Symbols: | Transcriptional factor B3 family protein | chr4:15331140-15333321 FORWARD LENGTH=493;; (*ITAG) Solyc08g006490.1.1 (e_value=1e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1082488-1084431 transcript_region:SL2.40ch08:1082488..1084431+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00041838g0001.1 protein AED:0.11 eAED:0.12 QI:0|0.83|0.42|1|1|1|7|0|1150; (*SWP) sp|P98204|ALA1_ARATH (e_value=0.0) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=0.0) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc01g096930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79693945-79699772 transcript_region:SL2.40ch01:79693945..79699772+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00041838g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0.85|0.75|8|133|777; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc01g096940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79700923-79705018 transcript_region:SL2.40ch01:79700923..79705018- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00020565g0013.1 protein AED:0.05 eAED:0.05 QI:175|0.9|0.81|1|0.5|0.63|11|319|373; (*SWP) sp|Q9M841|PEX12_ARATH (e_value=2e-180) Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12 PE=1 SV=2;; (*TAIR) AT3G04460.1 (e_value=0.0) | Symbols: PEX12, ATPEX12, APM4 | peroxin-12 | chr3:1186641-1189094 FORWARD LENGTH=393;; (*ITAG) Solyc05g054950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63884549-63891458 transcript_region:SL2.40ch05:63884549..63891458+ go_terms:GO:0008022,GO:0008270 functional_description:"Peroxisome assembly protein 12 (AHRD V1 ***- C0HB20_SALSA); contains Interpro domain(s) IPR017375 Peroxisome assembly, p12 "; GO:0008022,GO:0008270 NbS00020565g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|659; (*SWP) sp|Q5F259|AN13B_MOUSE (e_value=2e-31) Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1;; (*TAIR) AT3G04470.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:1189841-1191853 REVERSE LENGTH=640;; (*ITAG) Solyc05g054970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63896453-63900703 transcript_region:SL2.40ch05:63896453..63900703- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00020565g0011.1 protein AED:0.20 eAED:0.20 QI:0|1|0.6|1|1|1|5|0|177; (*SWP) sp|Q557J5|NIT1_DICDI (e_value=3e-59) Nitrilase homolog 1 OS=Dictyostelium discoideum GN=nit1-1 PE=3 SV=1;; (*TAIR) AT4G08790.1 (e_value=4e-101) | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein | chr4:5608489-5611118 REVERSE LENGTH=307;; (*ITAG) Solyc05g054940.2.1 (e_value=1e-123) genomic_reference:SL2.40ch05 gene_region:63876769-63883268 transcript_region:SL2.40ch05:63876769..63883268- go_terms:GO:0000257,GO:0047710 functional_description:"Nitrilase 1 like protein (AHRD V1 **** Q9LE50_ARATH); contains Interpro domain(s) IPR003010 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase "; GO:0000257,GO:0047710 NbS00047123g0010.1 protein AED:0.64 eAED:0.82 QI:80|0|0|1|0|0.5|2|31|27 NbS00047123g0009.1 protein AED:0.29 eAED:0.32 QI:0|0.8|0.83|1|0.4|0.5|6|592|330; (*TAIR) AT4G16100.1 (e_value=2e-85) | Symbols: | Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394;; (*ITAG) Solyc09g075500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62710802-62716387 transcript_region:SL2.40ch09:62710802..62716387+ functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00022155g0014.1 protein AED:0.03 eAED:0.03 QI:0|0.85|0.62|1|1|1|8|0|908; (*SWP) sp|O14053|YC47_SCHPO (e_value=1e-176) Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1672.07 PE=2 SV=1;; (*TAIR) AT4G04940.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:2511212-2517052 REVERSE LENGTH=910;; (*ITAG) Solyc01g087670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74360329-74366948 transcript_region:SL2.40ch01:74360329..74366948- go_terms:GO:0005515 functional_description:"Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (AHRD V1 *--* GBB1_DANRE); contains Interpro domain(s) IPR007319 Small-subunit processome, Utp21 "; GO:0005515 NbS00022155g0019.1 protein AED:0.10 eAED:0.14 QI:0|0.2|0.16|1|0.2|0.16|6|0|267; (*SWP) sp|P51102|DFRA_ARATH (e_value=3e-45) Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2;; (*TAIR) AT5G19440.1 (e_value=7e-90) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326;; (*ITAG) Solyc01g087640.2.1 (e_value=4e-144) genomic_reference:SL2.40ch01 gene_region:74345022-74349166 transcript_region:SL2.40ch01:74345022..74349166- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- A9PFK4_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00022155g0020.1 protein AED:0.04 eAED:0.06 QI:11|0|0|1|0|0.33|3|0|1003; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-55) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=1e-128) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc01g087510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74215693-74218969 transcript_region:SL2.40ch01:74215693..74218969- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00022155g0021.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|12|478|574; (*SWP) sp|Q96MW5|COG8_HUMAN (e_value=5e-96) Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens GN=COG8 PE=1 SV=2;; (*TAIR) AT5G11980.1 (e_value=0.0) | Symbols: | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:3868809-3872146 REVERSE LENGTH=569;; (*ITAG) Solyc01g087650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74351775-74359297 transcript_region:SL2.40ch01:74351775..74359297+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 8 (AHRD V1 ***- COG8_MOUSE); contains Interpro domain(s) IPR016632 Conserved oligomeric Golgi complex, subunit 8 "; GO:0005515 NbS00036794g0001.1 protein AED:0.20 eAED:0.20 QI:27|0.33|0.25|1|1|1|4|0|427; (*SWP) sp|P46253|STAD_SOLTU (e_value=0.0) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G02620.1 (e_value=7e-165) | Symbols: | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr3:560256-561760 FORWARD LENGTH=403;; (*ITAG) Solyc03g063110.2.1 (e_value=2e-163) genomic_reference:SL2.40ch03 gene_region:30614823-30618961 transcript_region:SL2.40ch03:30614823..30618961- go_terms:GO:0004768,GO:0045300 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** B7TZ44_SPIOL); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768,GO:0045300 NbS00019973g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|81 NbS00019973g0009.1 protein AED:0.08 eAED:0.09 QI:1|0|0|0.75|0.33|0.25|4|0|368; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-27) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-28) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011230.1.1 (e_value=1e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019973g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc11g056510.1.1 (e_value=4e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037064g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.91|0.84|1|0.91|1|13|46|543; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=1e-114) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G17360.1 (e_value=0.0) | Symbols: POK1 | phragmoplast orienting kinesin 1 | chr3:5936108-5946205 FORWARD LENGTH=2066;; (*ITAG) Solyc01g057320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:53386234-53394024 transcript_region:SL2.40ch01:53386234..53394024- go_terms:GO:0003677,GO:0003774 functional_description:"Kinesin-like protein (AHRD V1 ***- Q75LL2_ORYSJ); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0003677,GO:0003774 NbS00041138g0005.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|1|1|2|0|288; (*ITAG) Solyc01g097690.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:80199177-80200192 transcript_region:SL2.40ch01:80199177..80200192+ go_terms:GO:0009664 functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00041138g0002.1 protein AED:0.19 eAED:0.20 QI:0|0|0.5|1|1|1|2|0|228; (*ITAG) Solyc01g097690.2.1 (e_value=5e-25) genomic_reference:SL2.40ch01 gene_region:80199177-80200192 transcript_region:SL2.40ch01:80199177..80200192+ go_terms:GO:0009664 functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00041138g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|131; (*ITAG) Solyc01g097690.2.1 (e_value=8e-23) genomic_reference:SL2.40ch01 gene_region:80199177-80200192 transcript_region:SL2.40ch01:80199177..80200192+ go_terms:GO:0009664 functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00010605g0101.1 protein AED:0.20 eAED:0.20 QI:85|1|0.66|1|1|1|3|0|265 NbS00010605g0211.1 protein AED:0.02 eAED:0.02 QI:276|0.75|0.8|1|0.75|0.4|5|273|172 NbS00010605g0212.1 protein AED:0.34 eAED:0.48 QI:0|0.66|0.5|1|1|1|4|0|132 NbS00038587g0007.1 protein AED:0.09 eAED:0.11 QI:0|0.33|0|1|0|0|4|0|742; (*SWP) sp|Q6YUU5|MDR_ORYSJ (e_value=0.0) Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1;; (*TAIR) AT3G28345.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc02g087410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44432190-44438477 transcript_region:SL2.40ch02:44432190..44438477- go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00038587g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|370; (*SWP) sp|O22265|SR43C_ARATH (e_value=2e-121) Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2;; (*TAIR) AT2G47450.1 (e_value=1e-122) | Symbols: CAO, CPSRP43 | chloroplast signal recognition particle component (CAO) | chr2:19472781-19473902 FORWARD LENGTH=373;; (*ITAG) Solyc02g087400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44430154-44431260 transcript_region:SL2.40ch02:44430154..44431260+ go_terms:GO:0042802 functional_description:"Ankyrin repeat domain containing protein (AHRD V1 *--- B2WQ30_PYRTR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042802 NbS00006349g0006.1 protein AED:0.06 eAED:0.12 QI:0|0|0.5|1|1|1|2|242|547; (*SWP) sp|F4ISY0|Y2837_ARATH (e_value=3e-56) WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1;; (*TAIR) AT2G38370.1 (e_value=3e-57) | Symbols: | Plant protein of unknown function (DUF827) | chr2:16072184-16074168 REVERSE LENGTH=522;; (*ITAG) Solyc09g042710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29569131-29572077 transcript_region:SL2.40ch09:29569131..29572077- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q7XIW7_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00006349g0007.1 protein AED:0.37 eAED:0.39 QI:0|1|0.75|1|1|1|4|318|224; (*SWP) sp|P07602|SAP_HUMAN (e_value=9e-15) Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=1 SV=2;; (*TAIR) AT3G51730.1 (e_value=8e-60) | Symbols: | saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213;; (*ITAG) Solyc09g042700.2.1 (e_value=3e-112) genomic_reference:SL2.40ch09 gene_region:29530055-29533929 transcript_region:SL2.40ch09:29530055..29533929- go_terms:GO:0005764,GO:0006629 functional_description:"Proactivator polypeptide (AHRD V1 **-- C0H9G6_SALSA); contains Interpro domain(s) IPR011001 Saposin-like "; GO:0005764,GO:0006629 NbS00012053g0006.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|299|95 NbS00012053g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.5|0.33|3|0|424; (*SWP) sp|Q9STR4|1A17_ARATH (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1;; (*TAIR) AT4G26200.1 (e_value=0.0) | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate synthase 7 | chr4:13275307-13276946 FORWARD LENGTH=447;; (*ITAG) Solyc07g026900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:32131840-32133366 transcript_region:SL2.40ch07:32131840..32133366+ go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q43167_SOLTU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803,GO:0016847 NbS00012053g0109.1 protein AED:0.22 eAED:0.22 QI:111|0.5|0.63|0.72|1|1|11|356|427 NbS00012053g0112.1 protein AED:0.21 eAED:0.23 QI:1389|0.68|0.58|1|0.81|0.82|17|0|487 NbS00012053g0105.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|104 NbS00021247g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|263; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-14) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G49010.1 (e_value=1e-73) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:18132714-18133778 FORWARD LENGTH=314;; (*ITAG) Solyc03g119740.2.1 (e_value=9e-126) genomic_reference:SL2.40ch03 gene_region:62346231-62347604 transcript_region:SL2.40ch03:62346231..62347604- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00009006g0106.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|0.66|1|1|3|0|853 NbS00039059g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.88|0.8|0.9|1|0.9|10|220|267; (*SWP) sp|Q3MIT2|PUS10_HUMAN (e_value=3e-67) Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1;; (*TAIR) AT1G20410.1 (e_value=7e-128) | Symbols: | Pseudouridine synthase family protein | chr1:7079049-7082504 REVERSE LENGTH=504;; (*ITAG) Solyc04g082130.2.1 (e_value=2e-173) genomic_reference:SL2.40ch04 gene_region:63502355-63510359 transcript_region:SL2.40ch04:63502355..63510359- go_terms:GO:0005840 functional_description:"THUMP domain protein (AHRD V1 *--- D7EAV4_METEZ)"; GO:0005840 NbS00039059g0002.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.81|1|1|1|11|385|680; (*SWP) sp|Q9QUR6|PPCE_MOUSE (e_value=0.0) Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1;; (*TAIR) AT1G76140.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr1:28571187-28574852 FORWARD LENGTH=795;; (*ITAG) Solyc04g082120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63497736-63502187 transcript_region:SL2.40ch04:63497736..63502187+ go_terms:GO:0004252,GO:0070012 functional_description:"Prolyl endopeptidase (AHRD V1 **** B6U134_MAIZE); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0004252,GO:0070012 NbS00013179g0011.1 protein AED:0.08 eAED:0.10 QI:9|0.73|0.5|1|0.68|0.65|20|0|3656; (*SWP) sp|Q8H0T4|UPL2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3;; (*TAIR) AT1G70320.1 (e_value=0.0) | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:26488745-26501281 REVERSE LENGTH=3658;; (*ITAG) Solyc04g076620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00013179g0012.1 protein AED:0.32 eAED:0.32 QI:0|1|0.83|1|0.4|0.5|6|883|187; (*SWP) sp|Q28IV8|NGDN_XENTR (e_value=1e-20) Neuroguidin OS=Xenopus tropicalis GN=ngdn PE=2 SV=1;; (*TAIR) AT1G07840.3 (e_value=4e-61) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426131 FORWARD LENGTH=279;; (*ITAG) Solyc04g076560.2.1 (e_value=3e-91) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00025230g0004.1 protein AED:0.44 eAED:0.47 QI:159|0.25|0.4|1|0.5|0.4|5|0|140; (*TAIR) AT2G34860.2 (e_value=4e-44) | Symbols: EDA3 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr2:14708380-14709804 FORWARD LENGTH=186;; (*ITAG) Solyc01g006130.2.1 (e_value=3e-68) genomic_reference:SL2.40ch01 gene_region:785470-789814 transcript_region:SL2.40ch01:785470..789814+ go_terms:GO:0006457 functional_description:"Homology to unknown gene (AHRD V1 *-*- Q010T6_OSTTA); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00019490g0007.1 protein AED:0.32 eAED:0.34 QI:300|0.66|0.42|0.85|0.5|0.71|7|0|253; (*SWP) sp|O14327|PAB2_SCHPO (e_value=2e-38) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G65260.1 (e_value=2e-87) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26080501-26082984 REVERSE LENGTH=220;; (*ITAG) Solyc11g009090.1.1 (e_value=6e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3204621-3209644 transcript_region:SL2.40ch11:3204621..3209644- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 ***- D7MT99_ARALY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00014433g0030.1 protein AED:0.10 eAED:0.06 QI:0|0.75|0.4|0.8|0.75|0.8|5|6|298; (*SWP) sp|B2KI97|THOC2_RHIFE (e_value=4e-26) THO complex subunit 2 OS=Rhinolophus ferrumequinum GN=THOC2 PE=3 SV=1;; (*TAIR) AT1G24706.2 (e_value=2e-95) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=7e-137) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00014433g0028.1 protein AED:0.05 eAED:0.06 QI:34|1|0.7|1|1|1|10|278|1091; (*SWP) sp|C1FXW9|THOC2_DASNO (e_value=2e-67) THO complex subunit 2 OS=Dasypus novemcinctus GN=THOC2 PE=3 SV=1;; (*TAIR) AT1G24706.1 (e_value=0.0) | Symbols: THO2, AtTHO2 | THO2 | chr1:8742210-8755243 FORWARD LENGTH=1804;; (*ITAG) Solyc05g017890.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00014433g0027.1 protein AED:0.07 eAED:0.07 QI:240|0.5|0|0.66|1|1|3|0|90; (*TAIR) AT1G24706.2 (e_value=3e-26) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=6e-44) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00014433g0029.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|1|1|3|0|118; (*SWP) sp|B2KI97|THOC2_RHIFE (e_value=9e-30) THO complex subunit 2 OS=Rhinolophus ferrumequinum GN=THOC2 PE=3 SV=1;; (*TAIR) AT1G24706.2 (e_value=9e-70) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=3e-77) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00014433g0026.1 protein AED:0.19 eAED:0.35 QI:19|1|0.83|1|0.6|0.66|6|0|191; (*SWP) sp|B0KWH8|THOC2_CALJA (e_value=7e-20) THO complex subunit 2 OS=Callithrix jacchus GN=THOC2 PE=3 SV=1;; (*TAIR) AT1G24706.2 (e_value=3e-90) | Symbols: THO2 | THO2 | chr1:8742210-8755250 FORWARD LENGTH=1823;; (*ITAG) Solyc05g017890.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:19068776-19123062 transcript_region:SL2.40ch05:19068776..19123062- go_terms:GO:0005515 functional_description:"THO complex subunit 2 (AHRD V1 *-*- B0XJB9_CULQU)"; GO:0005515 NbS00037776g0007.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|851; (*SWP) sp|Q94B71|OBE3_ARATH (e_value=0.0) Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1;; (*TAIR) AT1G14740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1423) | chr1:5075450-5077732 REVERSE LENGTH=733;; (*ITAG) Solyc05g018500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22070854-22074148 transcript_region:SL2.40ch05:22070854..22074148+ functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; NbS00037776g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.25|1|1|1|4|0|372; (*SWP) sp|O81760|P2C63_ARATH (e_value=3e-157) Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1;; (*TAIR) AT4G33920.1 (e_value=2e-158) | Symbols: | Protein phosphatase 2C family protein | chr4:16260876-16262703 FORWARD LENGTH=380;; (*ITAG) Solyc02g092750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48294713-48298166 transcript_region:SL2.40ch02:48294713..48298166+ go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MFT9_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00051201g0005.1 protein AED:0.17 eAED:0.17 QI:266|1|0.75|1|0.85|0.75|8|0|396; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=4e-32) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G06800.1 (e_value=3e-71) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g078720.1.1 (e_value=4e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00010522g0005.1 protein AED:0.09 eAED:0.09 QI:242|1|1|1|0.90|1|12|218|532; (*SWP) sp|Q84TG1|RH57_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1;; (*TAIR) AT3G09720.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:2980483-2983268 REVERSE LENGTH=541;; (*ITAG) Solyc09g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:999717-1005511 transcript_region:SL2.40ch09:999717..1005511- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A1EC69_RAT); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00010522g0007.1 protein AED:0.08 eAED:0.16 QI:0|0|0.33|1|0|0|3|0|217; (*SWP) sp|Q86YN1|DOPP1_HUMAN (e_value=3e-37) Dolichyldiphosphatase 1 OS=Homo sapiens GN=DOLPP1 PE=1 SV=1;; (*TAIR) AT5G03080.1 (e_value=1e-101) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr5:721976-722656 FORWARD LENGTH=226;; (*ITAG) Solyc09g007450.2.1 (e_value=4e-129) genomic_reference:SL2.40ch09 gene_region:1006615-1008003 transcript_region:SL2.40ch09:1006615..1008003+ go_terms:GO:0047874 functional_description:"Dolichyldiphosphatase 1 (AHRD V1 **-* B6UB05_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0047874 NbS00010522g0009.1 protein AED:0.13 eAED:0.15 QI:0|0|0|1|0|0|2|0|463; (*SWP) sp|Q8GXH3|OSB2_ARATH (e_value=1e-54) Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2;; (*TAIR) AT4G20010.1 (e_value=9e-56) | Symbols: PTAC9, OSB2 | plastid transcriptionally active 9 | chr4:10842128-10843989 FORWARD LENGTH=371;; (*ITAG) Solyc09g007430.1.1 (e_value=3e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:997388-998551 transcript_region:SL2.40ch09:997388..998551- go_terms:GO:0003697 functional_description:"Mitochondrial SBP40 (AHRD V1 **-- Q58J68_SOLTU); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003697 NbS00014143g0016.1 protein AED:0.21 eAED:0.21 QI:161|1|1|1|0.75|0.82|17|463|552; (*SWP) sp|O35841|API5_MOUSE (e_value=2e-60) Apoptosis inhibitor 5 OS=Mus musculus GN=Api5 PE=2 SV=2;; (*TAIR) AT2G34040.1 (e_value=0.0) | Symbols: | Apoptosis inhibitory protein 5 (API5) | chr2:14377957-14382246 REVERSE LENGTH=553;; (*ITAG) Solyc10g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1553509-1565649 transcript_region:SL2.40ch10:1553509..1565649+ go_terms:GO:0017134 functional_description:"Apoptosis inhibitor (AHRD V1 ***- B0WCI8_CULQU); contains Interpro domain(s) IPR008383 Apoptosis inhibitory 5 "; GO:0017134 NbS00014143g0011.1 protein AED:0.20 eAED:0.22 QI:385|0.28|0.25|0.87|0.85|0.75|8|71|526; (*SWP) sp|Q9LM76|PUB44_ARATH (e_value=3e-122) U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1;; (*TAIR) AT1G20780.1 (e_value=3e-123) | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated E3 ubiquitin ligase 1 | chr1:7217812-7220609 FORWARD LENGTH=801;; (*ITAG) Solyc04g082570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00014143g0018.1 protein AED:0.26 eAED:0.26 QI:170|0.71|0.5|1|0.42|0.37|8|177|531; (*SWP) sp|Q9LT17|BBR_ARATH (e_value=2e-15) E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1;; (*TAIR) AT1G53190.2 (e_value=2e-61) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc10g007140.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1543949-1548850 transcript_region:SL2.40ch10:1543949..1548850+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00014143g0017.1 protein AED:0.20 eAED:0.34 QI:52|0|0.33|0.66|0|0|3|349|43 NbS00014143g0006.1 protein AED:0.51 eAED:0.78 QI:0|0|0|1|1|1|3|0|173; (*SWP) sp|Q9C6W4|BGA15_ARATH (e_value=1e-43) Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1;; (*TAIR) AT1G31740.1 (e_value=1e-44) | Symbols: BGAL15 | beta-galactosidase 15 | chr1:11365285-11369908 REVERSE LENGTH=786;; (*ITAG) Solyc07g042220.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52608232-52612572 transcript_region:SL2.40ch07:52608232..52612572+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9RR68_RICCO); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00023855g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|112; (*SWP) sp|O24575|DCAM_MAIZE (e_value=2e-41) S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1;; (*TAIR) AT3G02470.4 (e_value=8e-33) | Symbols: | S-adenosylmethionine decarboxylase | chr3:510223-511323 FORWARD LENGTH=366;; (*ITAG) Solyc05g010420.1.1 (e_value=6e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00023855g0005.1 protein AED:0.26 eAED:0.29 QI:983|0.8|0.72|1|0.3|0.27|11|0|480; (*SWP) sp|Q0WVM4|Y2239_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1;; (*TAIR) AT2G23950.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:10187204-10189969 REVERSE LENGTH=634;; (*ITAG) Solyc07g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:965123-969368 transcript_region:SL2.40ch07:965123..969368+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00014572g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0|2|486|330; (*SWP) sp|P29790|ATPG_TOBAC (e_value=8e-143) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1;; (*TAIR) AT4G04640.1 (e_value=2e-134) | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373;; (*ITAG) Solyc12g005060.1.1 (e_value=3e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:28551-29600 transcript_region:SL2.40ch12:28551..29600+ go_terms:GO:0045261 functional_description:"ATP synthase gamma chain (AHRD V1 ***- C6TES6_SOYBN); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0045261 NbS00012960g0006.1 protein AED:0.14 eAED:0.14 QI:149|1|0|1|1|1|2|0|185; (*SWP) sp|Q46036|BLC_CITFR (e_value=7e-25) Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1;; (*TAIR) AT5G58070.1 (e_value=9e-108) | Symbols: ATTIL, TIL | temperature-induced lipocalin | chr5:23500512-23501156 REVERSE LENGTH=186;; (*ITAG) Solyc12g010320.1.1 (e_value=1e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3377663-3380422 transcript_region:SL2.40ch12:3377663..3380422+ go_terms:GO:0005488,GO:0006810 functional_description:"Outer membrane lipoprotein blc (AHRD V1 **-- D0RZG9_ACICA); contains Interpro domain(s) IPR002345 Lipocalin "; GO:0005488,GO:0006810 NbS00012960g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0.2|1|0.5|0.8|5|0|634; (*SWP) sp|P62598|ARR12_ARATH (e_value=4e-95) Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2;; (*TAIR) AT2G25180.1 (e_value=3e-96) | Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596;; (*ITAG) Solyc12g010330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3391382-3396707 transcript_region:SL2.40ch12:3391382..3396707- go_terms:GO:0003700 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0003700 NbS00021886g0004.1 protein AED:0.33 eAED:0.33 QI:0|0.71|0.75|1|1|1|8|0|294; (*TAIR) AT1G56000.1 (e_value=2e-104) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr1:20944149-20946101 FORWARD LENGTH=384;; (*ITAG) Solyc10g005620.2.1 (e_value=3e-141) genomic_reference:SL2.40ch10 gene_region:500622-504454 transcript_region:SL2.40ch10:500622..504454- functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- C7RVE7_ACCPU); contains Interpro domain(s) IPR002937 Amine oxidase "; NbS00054354g0008.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|242; (*SWP) sp|Q9LJ45|CCU11_ARATH (e_value=5e-72) Cyclin-U1-1 OS=Arabidopsis thaliana GN=CYCU1-1 PE=1 SV=1;; (*TAIR) AT3G21870.1 (e_value=4e-73) | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703927-7704813 REVERSE LENGTH=210;; (*ITAG) Solyc07g052610.2.1 (e_value=8e-118) genomic_reference:SL2.40ch07 gene_region:58400621-58402141 transcript_region:SL2.40ch07:58400621..58402141- go_terms:GO:0005515 functional_description:"Cyclin (AHRD V1 *-*- D8UD80_VOLCA); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515 NbS00000373g0006.1 protein AED:0.01 eAED:0.01 QI:152|1|0.5|1|1|1|2|0|264; (*TAIR) AT2G19580.1 (e_value=1e-97) | Symbols: TET2 | tetraspanin2 | chr2:8472393-8475021 REVERSE LENGTH=270;; (*ITAG) Solyc03g059390.2.1 (e_value=6e-144) genomic_reference:SL2.40ch03 gene_region:26386349-26388448 transcript_region:SL2.40ch03:26386349..26388448- go_terms:GO:0016021 functional_description:"Senescence-associated protein 5 (AHRD V1 ***- O81655_HEMSP); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00000373g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|87 NbS00060505g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|401; (*SWP) sp|P90648|MHCKB_DICDI (e_value=3e-17) Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1;; (*TAIR) AT5G50120.1 (e_value=1e-129) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20382630-20383796 REVERSE LENGTH=388;; (*ITAG) Solyc03g113850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57962450-57963874 transcript_region:SL2.40ch03:57962450..57963874+ go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 *--* GBB_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00022441g0001.1 protein AED:0.40 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|130; (*ITAG) Solyc04g050450.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:46388272-46390482 transcript_region:SL2.40ch04:46388272..46390482- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00022441g0017.1 protein AED:0.23 eAED:0.23 QI:0|0.71|0.5|1|0.42|0.37|8|0|584; (*SWP) sp|Q9CAL3|CRK2_ARATH (e_value=0.0) Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1;; (*TAIR) AT1G70520.1 (e_value=0.0) | Symbols: CRK2 | cysteine-rich RLK (RECEPTOR-like protein kinase) 2 | chr1:26584888-26587334 REVERSE LENGTH=649;; (*ITAG) Solyc01g007960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2149842-2152519 transcript_region:SL2.40ch01:2149842..2152519+ go_terms:GO:0019199,GO:0004674 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0019199,GO:0004674 NbS00022441g0011.1 protein AED:0.33 eAED:0.34 QI:311|0.85|0.87|1|0.28|0.25|8|0|342; (*TAIR) AT1G70480.1 (e_value=8e-123) | Symbols: | Domain of unknown function (DUF220) | chr1:26562304-26563608 FORWARD LENGTH=320;; (*ITAG) Solyc01g008010.2.1 (e_value=2e-177) genomic_reference:SL2.40ch01 gene_region:2180444-2185087 transcript_region:SL2.40ch01:2180444..2185087+ functional_description:"Os09g0327550 protein (Fragment) (AHRD V1 *-*- C7J753_ORYSJ); contains Interpro domain(s) IPR003863 Protein of unknown function DUF220 "; NbS00022441g0016.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.66|0|0|3|0|145; (*SWP) sp|O80763|NRX1_ARATH (e_value=2e-44) Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1;; (*TAIR) AT1G60420.1 (e_value=2e-45) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc05g005460.2.1 (e_value=3e-44) genomic_reference:SL2.40ch05 gene_region:341827-347358 transcript_region:SL2.40ch05:341827..347358+ go_terms:GO:0004791 functional_description:"Nucleoredoxin 2 (AHRD V1 *--- A8I9J4_CHLRE); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0004791 NbS00022441g0015.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|111; (*SWP) sp|O80763|NRX1_ARATH (e_value=9e-22) Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1;; (*TAIR) AT1G60420.1 (e_value=7e-23) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc05g005460.2.1 (e_value=8e-19) genomic_reference:SL2.40ch05 gene_region:341827-347358 transcript_region:SL2.40ch05:341827..347358+ go_terms:GO:0004791 functional_description:"Nucleoredoxin 2 (AHRD V1 *--- A8I9J4_CHLRE); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0004791 NbS00060786g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|362; (*TAIR) AT1G26650.1 (e_value=3e-130) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9210335-9211342 FORWARD LENGTH=335;; (*ITAG) Solyc05g012870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6018682-6019749 transcript_region:SL2.40ch05:6018682..6019749+ functional_description:"Genomic DNA chromosome 5 P1 clone MFB13 (AHRD V1 ***- Q9FLJ9_ARATH)"; NbS00050912g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|225|233; (*SWP) sp|A8IZG4|CIAO1_CHLRE (e_value=3e-67) Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1;; (*TAIR) AT2G26060.2 (e_value=3e-95) | Symbols: emb1345 | Transducin/WD40 repeat-like superfamily protein | chr2:11102400-11105081 FORWARD LENGTH=337;; (*ITAG) Solyc09g074400.2.1 (e_value=1e-122) genomic_reference:SL2.40ch09 gene_region:61691051-61700245 transcript_region:SL2.40ch09:61691051..61700245- go_terms:GO:0045505 functional_description:"WD repeat protein 39 (AHRD V1 **-- C1BHI0_ONCMY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00050912g0003.1 protein AED:0.72 eAED:0.86 QI:0|0|0|0.5|0.33|0.5|4|0|78; (*SWP) sp|A7RWD2|CIAO1_NEMVE (e_value=1e-16) Probable cytosolic iron-sulfur protein assembly protein OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1;; (*TAIR) AT2G26060.2 (e_value=3e-20) | Symbols: emb1345 | Transducin/WD40 repeat-like superfamily protein | chr2:11102400-11105081 FORWARD LENGTH=337;; (*ITAG) Solyc09g074400.2.1 (e_value=5e-25) genomic_reference:SL2.40ch09 gene_region:61691051-61700245 transcript_region:SL2.40ch09:61691051..61700245- go_terms:GO:0045505 functional_description:"WD repeat protein 39 (AHRD V1 **-- C1BHI0_ONCMY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00033920g0004.1 protein AED:0.24 eAED:0.24 QI:203|1|1|1|1|1|7|633|274; (*SWP) sp|Q9ZT66|E134_MAIZE (e_value=7e-38) Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1;; (*TAIR) AT3G23600.1 (e_value=5e-90) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239;; (*ITAG) Solyc01g080220.2.1 (e_value=9e-152) genomic_reference:SL2.40ch01 gene_region:71944144-71946126 transcript_region:SL2.40ch01:71944144..71946126+ go_terms:GO:0005515 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0005515 NbS00042530g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|110 NbS00059860g0004.1 protein AED:0.05 eAED:0.05 QI:165|1|1|1|1|1|5|133|355; (*SWP) sp|Q41330|KN1_SOLLC (e_value=6e-178) Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1;; (*TAIR) AT4G08150.1 (e_value=1e-129) | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabidopsis thaliana | chr4:5147969-5150610 REVERSE LENGTH=398;; (*ITAG) Solyc04g077210.2.1 (e_value=2e-179) genomic_reference:SL2.40ch04 gene_region:59728777-59736042 transcript_region:SL2.40ch04:59728777..59736042+ go_terms:GO:0005515,GO:0016563 functional_description:"Knotted-like homeobox protein (AHRD V1 ***- Q49RB7_POPTO); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515,GO:0016563 NbS00017501g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0.5|1|0|0|2|0|221; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=4e-44) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=3e-45) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc04g077980.1.1 (e_value=6e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60443326-60444108 transcript_region:SL2.40ch04:60443326..60444108+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00012397g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|60; (*SWP) sp|Q8VWY7|POLC2_TOBAC (e_value=5e-35) Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1;; (*TAIR) AT3G03430.1 (e_value=5e-18) | Symbols: | Calcium-binding EF-hand family protein | chr3:814481-814732 FORWARD LENGTH=83;; (*ITAG) Solyc02g063340.1.1 (e_value=1e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29979134-29979394 transcript_region:SL2.40ch02:29979134..29979394- go_terms:GO:0005509 functional_description:"Calmodulin 4 (AHRD V1 **-- Q6WEH7_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00011751g0001.1 protein AED:0.19 eAED:0.22 QI:24|0.88|0.8|1|0.77|0.6|10|416|434; (*SWP) sp|Q5ZMP3|T184C_CHICK (e_value=4e-39) Transmembrane protein 184C OS=Gallus gallus GN=TMEM184C PE=2 SV=1;; (*TAIR) AT1G23070.1 (e_value=2e-167) | Symbols: | Protein of unknown function (DUF300) | chr1:8174011-8175758 REVERSE LENGTH=403;; (*ITAG) Solyc07g042090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52343130-52347249 transcript_region:SL2.40ch07:52343130..52347249- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A9UM61_XENTR); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00011751g0004.1 protein AED:0.66 eAED:1.00 QI:0|0|0|1|1|1|3|0|68 NbS00011751g0007.1 protein AED:0.20 eAED:0.20 QI:277|1|1|1|0.83|0.84|13|251|752; (*SWP) sp|O02668|ITIH2_PIG (e_value=2e-18) Inter-alpha-trypsin inhibitor heavy chain H2 OS=Sus scrofa GN=ITIH2 PE=2 SV=1;; (*TAIR) AT1G19110.1 (e_value=0.0) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc07g042080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52332572-52342131 transcript_region:SL2.40ch07:52332572..52342131+ functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 *-*- Q1YZ74_PHOPR); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00047790g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|452; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=1e-177) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT1G79250.2 (e_value=0.0) | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810336-29812186 REVERSE LENGTH=555;; (*ITAG) Solyc12g017390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6640415-6642426 transcript_region:SL2.40ch12:6640415..6642426+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q41297_9SOLN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00047790g0012.1 protein AED:0.14 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|331; (*SWP) sp|Q9MA17|SMB_ARATH (e_value=1e-101) Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1;; (*TAIR) AT1G79580.3 (e_value=1e-102) | Symbols: SMB | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:29941020-29942925 REVERSE LENGTH=371;; (*ITAG) Solyc12g017400.1.1 (e_value=1e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6650295-6652079 transcript_region:SL2.40ch12:6650295..6652079- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9HYE4_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00038524g0003.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|0|0.5|2|610|444; (*SWP) sp|O22193|PUB4_ARATH (e_value=2e-60) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G16490.1 (e_value=2e-155) | Symbols: | ARM repeat superfamily protein | chr4:9293891-9295530 REVERSE LENGTH=472;; (*ITAG) Solyc04g014810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5050800-5053600 transcript_region:SL2.40ch04:5050800..5053600+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00035240g0004.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0.5|0.66|3|0|365; (*SWP) sp|Q00874|DR100_ARATH (e_value=5e-17) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=2e-28) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00035240g0005.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|3|0|609; (*SWP) sp|O22476|BRI1_ARATH (e_value=1e-37) Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=2e-57) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3574842-3577907 transcript_region:SL2.40ch07:3574842..3577907- go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00054436g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|639; (*TAIR) AT5G57070.1 (e_value=1e-24) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:23096221-23097948 FORWARD LENGTH=575;; (*ITAG) Solyc07g041070.2.1 (e_value=2e-154) genomic_reference:SL2.40ch07 gene_region:49074742-49076825 transcript_region:SL2.40ch07:49074742..49076825+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025161g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|91; (*ITAG) Solyc07g052260.2.1 (e_value=8e-18) genomic_reference:SL2.40ch07 gene_region:58079750-58080236 transcript_region:SL2.40ch07:58079750..58080236- functional_description:"Unknown Protein (AHRD V1)"; NbS00019602g0003.1 protein AED:0.19 eAED:0.19 QI:508|1|0.85|1|0.83|0.71|7|367|248; (*SWP) sp|Q06548|APK1A_ARATH (e_value=2e-110) Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1;; (*TAIR) AT1G07570.1 (e_value=1e-111) | Symbols: APK1A, APK1 | Protein kinase superfamily protein | chr1:2331369-2333210 REVERSE LENGTH=410;; (*ITAG) Solyc06g005500.2.1 (e_value=7e-156) genomic_reference:SL2.40ch06 gene_region:525975-529157 transcript_region:SL2.40ch06:525975..529157+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00019172g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|170; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=2e-17) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT5G37540.1 (e_value=2e-81) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:14912862-14914190 FORWARD LENGTH=442;; (*ITAG) Solyc11g011440.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4499426-4500724 transcript_region:SL2.40ch11:4499426..4500724- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TS94_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00019172g0007.1 protein AED:0.23 eAED:0.23 QI:179|0.75|0.82|1|0.81|0.76|17|337|522; (*SWP) sp|Q7DMA9|PAS1_ARATH (e_value=2e-180) Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2;; (*TAIR) AT3G54010.1 (e_value=0.0) | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:20001042-20005063 FORWARD LENGTH=635;; (*ITAG) Solyc11g011420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4485102-4493711 transcript_region:SL2.40ch11:4485102..4493711+ go_terms:GO:0006457,GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457,GO:0005488 NbS00018341g0008.1 protein AED:0.44 eAED:0.47 QI:0|0.66|0|1|0.66|0.25|4|0|327; (*ITAG) Solyc04g057970.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:54241011-54245854 transcript_region:SL2.40ch04:54241011..54245854+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018341g0010.1 protein AED:0.46 eAED:0.78 QI:0|0|0|1|0|0.14|7|0|192 NbS00018341g0011.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|0|0.5|2|0|84 NbS00018341g0013.1 protein AED:0.25 eAED:0.35 QI:0|0.77|0.6|1|0.55|0.7|10|0|1975; (*SWP) sp|Q3ED78|C3H7_ARATH (e_value=5e-117) Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1;; (*TAIR) AT1G21580.1 (e_value=6e-128) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:7557822-7565655 REVERSE LENGTH=2166;; (*ITAG) Solyc04g057990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54248696-54262878 transcript_region:SL2.40ch04:54248696..54262878- go_terms:GO:0005524,GO:0008270 functional_description:"mRNA 3&apos-end-processing protein YTH1 (AHRD V1 *--- B6JVP1_SCHJY); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005524,GO:0008270 NbS00018341g0002.1 protein AED:0.44 eAED:0.45 QI:0|0|0.5|1|1|1|2|586|202; (*SWP) sp|A9PJQ8|NDHM_POPJC (e_value=2e-97) NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1;; (*TAIR) AT4G37925.1 (e_value=7e-77) | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex | chr4:17830748-17831485 REVERSE LENGTH=217;; (*ITAG) Solyc04g057980.2.1 (e_value=8e-121) genomic_reference:SL2.40ch04 gene_region:54247194-54248180 transcript_region:SL2.40ch04:54247194..54248180- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit M (AHRD V1 *-*- D8G7H3_9CYAN); contains Interpro domain(s) IPR018922 NAD(P)H-quinone oxidoreductase subunit M "; GO:0055114 NbS00061118g0002.1 protein AED:0.03 eAED:0.03 QI:150|1|1|1|0.5|0.66|3|175|168; (*SWP) sp|Q9SI62|POED2_ARATH (e_value=5e-43) Probable polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2;; (*TAIR) AT2G16530.1 (e_value=3e-44) | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein | chr2:7163276-7165064 REVERSE LENGTH=343;; (*ITAG) Solyc01g110460.2.1 (e_value=5e-81) genomic_reference:SL2.40ch01 gene_region:88914272-88922106 transcript_region:SL2.40ch01:88914272..88922106- go_terms:GO:0003865 functional_description:"3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V1 **** D7M2L5_ARALY); contains Interpro domain(s) IPR001104 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "; GO:0003865 NbS00006072g0005.1 protein AED:0.11 eAED:0.25 QI:0|0.4|0.16|1|0|0|6|0|307; (*SWP) sp|Q9LHN4|LPAT5_ARATH (e_value=7e-80) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1;; (*TAIR) AT3G18850.5 (e_value=4e-81) | Symbols: LPAT5 | lysophosphatidyl acyltransferase 5 | chr3:6499529-6500840 REVERSE LENGTH=352;; (*ITAG) Solyc04g079880.2.1 (e_value=2e-125) genomic_reference:SL2.40ch04 gene_region:61792016-61794085 transcript_region:SL2.40ch04:61792016..61794085+ go_terms:GO:0005515,GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** B2LWM4_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0005515,GO:0003841 NbS00006072g0004.1 protein AED:0.33 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|173; (*SWP) sp|P28493|PR5_ARATH (e_value=5e-23) Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1;; (*TAIR) AT1G75040.1 (e_value=4e-24) | Symbols: PR5, PR-5 | pathogenesis-related gene 5 | chr1:28177754-28178731 FORWARD LENGTH=239;; (*ITAG) Solyc04g079890.2.1 (e_value=8e-25) genomic_reference:SL2.40ch04 gene_region:61798328-61799451 transcript_region:SL2.40ch04:61798328..61799451+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- O24468_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00021549g0010.1 protein AED:0.17 eAED:0.17 QI:117|0.85|0.75|1|0.42|0.75|8|0|397; (*SWP) sp|Q9NUP7|TRM13_HUMAN (e_value=9e-35) tRNA guanosine-2'-O-methyltransferase TRM13 homolog OS=Homo sapiens GN=CCDC76 PE=1 SV=2;; (*TAIR) AT4G01880.1 (e_value=2e-157) | Symbols: | methyltransferases | chr4:810810-812882 REVERSE LENGTH=453;; (*ITAG) Solyc01g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69470003-69474422 transcript_region:SL2.40ch01:69470003..69474422+ go_terms:GO:0008033 functional_description:"tRNA guanosine-2'-O-methyltransferase TRM13 (AHRD V1 ***- TRM13_VANPO); contains Interpro domain(s) IPR007871 Methyltransferase TRM13 "; GO:0008033 NbS00021549g0009.1 protein AED:0.14 eAED:0.14 QI:39|0.5|0|0.66|1|1|3|0|77; (*SWP) sp|Q9LRP7|ATG8I_ARATH (e_value=3e-41) Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1;; (*TAIR) AT3G15580.1 (e_value=2e-42) | Symbols: ATG8I, APG8H | Ubiquitin-like superfamily protein | chr3:5274075-5275000 REVERSE LENGTH=115;; (*ITAG) Solyc01g068060.2.1 (e_value=2e-47) genomic_reference:SL2.40ch01 gene_region:69474674-69480759 transcript_region:SL2.40ch01:69474674..69480759- go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 ***- A6P6J6_FAGES); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00032543g0004.1 protein AED:0.22 eAED:0.23 QI:0|0.87|0.77|1|0.62|0.77|9|243|368; (*SWP) sp|Q99MB4|CBWD1_RAT (e_value=5e-62) COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2;; (*TAIR) AT1G26520.1 (e_value=1e-167) | Symbols: | Cobalamin biosynthesis CobW-like protein | chr1:9163448-9165594 REVERSE LENGTH=374;; (*ITAG) Solyc05g012460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5699530-5703203 transcript_region:SL2.40ch05:5699530..5703203- go_terms:GO:0005515,GO:0003824 functional_description:"Cobalamin synthesis protein P (AHRD V1 **-- B7KCN9_CYAP7); contains Interpro domain(s) IPR003495 Cobalamin (vitamin B12) biosynthesis CobW-like "; GO:0005515,GO:0003824 NbS00057653g0006.1 protein AED:0.14 eAED:0.15 QI:5|0.61|0.59|1|0.66|0.63|22|0|923; (*SWP) sp|O94477|MYO52_SCHPO (e_value=2e-97) Myosin-52 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=myo52 PE=1 SV=1;; (*TAIR) AT5G54280.2 (e_value=0.0) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220;; (*ITAG) Solyc10g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1255061-1265706 transcript_region:SL2.40ch10:1255061..1265706- go_terms:GO:0042803 functional_description:"Myosin (AHRD V1 ***- Q9SNF0_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00057653g0005.1 protein AED:0.47 eAED:0.47 QI:0|1|0|1|0|0|2|0|79; (*TAIR) AT5G54280.1 (e_value=6e-16) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22044715 REVERSE LENGTH=1030;; (*ITAG) Solyc10g006820.2.1 (e_value=5e-28) genomic_reference:SL2.40ch10 gene_region:1255061-1265706 transcript_region:SL2.40ch10:1255061..1265706- go_terms:GO:0042803 functional_description:"Myosin (AHRD V1 ***- Q9SNF0_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00019342g0013.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|1|3|265|407; (*SWP) sp|Q9C8W3|FUT13_ARATH (e_value=0.0) Alpha-(1,4)-fucosyltransferase OS=Arabidopsis thaliana GN=FUT13 PE=2 SV=2;; (*TAIR) AT1G71990.1 (e_value=0.0) | Symbols: FUT13, ATFUT13, FUCTC, FT4-M, ATFT4 | fucosyltransferase 13 | chr1:27100345-27102097 FORWARD LENGTH=401;; (*ITAG) Solyc06g065240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37071244-37075273 transcript_region:SL2.40ch06:37071244..37075273+ go_terms:GO:0016757 functional_description:"Alpha-1 4-fucosyltransferase (AHRD V1 ***- Q8VXF9_SOLLC); contains Interpro domain(s) IPR017177 Alpha-(1, 3)-fucosyltransferase/alpha-(1, 4)-fucosyltransferase, plant "; GO:0016757 NbS00019342g0012.1 protein AED:0.34 eAED:0.34 QI:117|1|1|1|0.6|0.66|6|274|174; (*SWP) sp|Q8SSN5|NAA20_DICDI (e_value=7e-75) N-alpha-acetyltransferase 20 OS=Dictyostelium discoideum GN=nat5 PE=3 SV=2;; (*TAIR) AT1G03150.1 (e_value=2e-124) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:756461-758441 FORWARD LENGTH=174;; (*ITAG) Solyc06g065230.2.1 (e_value=2e-126) genomic_reference:SL2.40ch06 gene_region:37067406-37070737 transcript_region:SL2.40ch06:37067406..37070737+ go_terms:GO:0004596 functional_description:"N-acetyltransferase 5 (AHRD V1 **** Q94F75_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004596 NbS00019342g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|92; (*SWP) sp|P33082|AXX15_SOYBN (e_value=2e-16) Auxin-induced protein X15 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G09530.1 (e_value=5e-24) | Symbols: | SAUR-like auxin-responsive protein family | chr4:6029413-6029724 REVERSE LENGTH=103;; (*ITAG) Solyc06g065220.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37064749-37065042 transcript_region:SL2.40ch06:37064749..37065042- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00019342g0010.1 protein AED:0.74 eAED:0.74 QI:0|0|0|0.33|1|1|3|0|61 NbS00024808g0006.1 protein AED:0.24 eAED:0.25 QI:227|0.5|0.4|1|0|0|5|0|453; (*ITAG) Solyc07g005700.2.1 (e_value=2e-141) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00057687g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|401; (*SWP) sp|Q55ED4|U396_DICDI (e_value=1e-39) UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3 SV=1;; (*TAIR) AT4G02720.1 (e_value=5e-81) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1204545-1205813 REVERSE LENGTH=422;; (*ITAG) Solyc11g071660.1.1 (e_value=7e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52154367-52155974 transcript_region:SL2.40ch11:52154367..52155974- functional_description:"NF-kappa-B-activating protein (AHRD V1 *--- NKAP_HUMAN); contains Interpro domain(s) IPR009269 Protein of unknown function DUF926 "; NbS00057687g0007.1 protein AED:0.29 eAED:0.32 QI:1|0|0|1|0|0|4|0|236 NbS00057687g0009.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|0|0|3|0|86 NbS00057687g0008.1 protein AED:0.43 eAED:0.53 QI:0|0|0|1|0|0|2|0|78 NbS00014712g0004.1 protein AED:0.05 eAED:0.05 QI:310|0.9|0.90|1|0.9|0.72|11|625|1219; (*SWP) sp|O97159|CHDM_DROME (e_value=1e-11) Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2;; (*TAIR) AT5G58610.1 (e_value=3e-135) | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065;; (*ITAG) Solyc09g031580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:21995732-22004663 transcript_region:SL2.40ch09:21995732..22004663+ go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--* Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00056355g0003.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.25|0.75|1|1|4|0|152; (*SWP) sp|P34788|RS18_ARATH (e_value=4e-92) 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1;; (*TAIR) AT4G09800.1 (e_value=3e-93) | Symbols: RPS18C | S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152;; (*ITAG) Solyc03g078290.2.1 (e_value=3e-100) genomic_reference:SL2.40ch03 gene_region:43867765-43870061 transcript_region:SL2.40ch03:43867765..43870061+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S18 (AHRD V1 ***- B4G286_MAIZE); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003735,GO:0005515 NbS00034463g0006.1 protein AED:0.17 eAED:0.28 QI:293|1|0.66|1|1|0.66|3|0|59; (*ITAG) Solyc06g071780.2.1 (e_value=5e-17) genomic_reference:SL2.40ch06 gene_region:40596826-40599757 transcript_region:SL2.40ch06:40596826..40599757+ go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 5 (AHRD V1 ***- DI195_ORYSJ); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00034463g0007.1 protein AED:0.34 eAED:0.54 QI:403|0.5|0.66|1|0.5|0.33|3|0|86 NbS00030360g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|0|0.5|2|0|176; (*SWP) sp|Q43517|FER1_SOLLC (e_value=1e-81) Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1;; (*TAIR) AT1G60950.1 (e_value=3e-54) | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like superfamily protein | chr1:22444565-22445011 FORWARD LENGTH=148;; (*ITAG) Solyc10g044520.1.1 (e_value=9e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:22136377-22136811 transcript_region:SL2.40ch10:22136377..22136811- go_terms:GO:0005515 functional_description:"Ferredoxin I (AHRD V1 ***- Q93XJ9_SOLTU); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0005515 NbS00030360g0011.1 protein AED:0.11 eAED:0.13 QI:0|1|0.77|1|1|1|9|0|872; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc10g024370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13627567-13633260 transcript_region:SL2.40ch10:13627567..13633260+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00030360g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.4|1|1|1|5|0|304; (*SWP) sp|Q9HD45|TM9S3_HUMAN (e_value=3e-90) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2;; (*TAIR) AT1G10950.1 (e_value=3e-140) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc10g044480.1.1 (e_value=2e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21983016-21991883 transcript_region:SL2.40ch10:21983016..21991883+ go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00030360g0016.1 protein AED:0.16 eAED:0.19 QI:0|0.42|0.37|1|0|0.5|8|0|483; (*SWP) sp|O23693|MLO4_ARATH (e_value=2e-71) MLO-like protein 4 OS=Arabidopsis thaliana GN=MLO4 PE=2 SV=2;; (*TAIR) AT1G11000.1 (e_value=1e-72) | Symbols: MLO4, ATMLO4 | Seven transmembrane MLO family protein | chr1:3671935-3675909 REVERSE LENGTH=573;; (*ITAG) Solyc10g044510.1.1 (e_value=6e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22128868-22135940 transcript_region:SL2.40ch10:22128868..22135940+ go_terms:GO:0016021 functional_description:"MLO-like protein 4 (AHRD V1 ***- B6TXU3_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00016319g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.25|0.75|1|1|4|32|77; (*SWP) sp|Q99070|GRP2_SORBI (e_value=2e-19) Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1;; (*TAIR) AT3G23830.2 (e_value=4e-22) | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136;; (*ITAG) Solyc02g066930.2.1 (e_value=7e-24) genomic_reference:SL2.40ch02 gene_region:31762776-31764561 transcript_region:SL2.40ch02:31762776..31764561+ go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* Q941H9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00016319g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|477; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-176) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36770.1 (e_value=5e-54) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15415227-15416717 REVERSE LENGTH=496;; (*ITAG) Solyc04g016190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6942505-6943908 transcript_region:SL2.40ch04:6942505..6943908- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 *-** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00046872g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|826; (*SWP) sp|Q9M3D6|AB19G_ARATH (e_value=0.0) ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1;; (*TAIR) AT3G55130.1 (e_value=0.0) | Symbols: ATWBC19, WBC19 | white-brown complex homolog 19 | chr3:20434111-20436288 REVERSE LENGTH=725;; (*ITAG) Solyc09g005970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:665866-668082 transcript_region:SL2.40ch09:665866..668082+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 2 (AHRD V1 ***- AB2G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00046872g0008.1 protein AED:0.00 eAED:0.00 QI:242|1|1|1|1|1|4|368|229; (*TAIR) AT3G53490.1 (e_value=1e-59) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G02720.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19832666-19834024 FORWARD LENGTH=225;; (*ITAG) Solyc09g005960.2.1 (e_value=3e-122) genomic_reference:SL2.40ch09 gene_region:659307-663477 transcript_region:SL2.40ch09:659307..663477+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046872g0011.1 protein AED:0.36 eAED:0.47 QI:21|0.5|0.4|1|0.75|0.4|5|0|240; (*SWP) sp|Q9FYB7|RSZ32_ARATH (e_value=9e-40) Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana GN=RS2Z32 PE=1 SV=1;; (*TAIR) AT3G53500.2 (e_value=7e-41) | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:19834557-19836507 REVERSE LENGTH=284;; (*ITAG) Solyc09g005980.2.1 (e_value=3e-53) genomic_reference:SL2.40ch09 gene_region:670381-673543 transcript_region:SL2.40ch09:670381..673543+ go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Splicing factor arginine/serine-rich 6 (AHRD V1 *--- B6T453_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0008270,GO:0000166 NbS00047113g0001.1 protein AED:0.45 eAED:0.51 QI:173|0|0.2|0.8|1|1|5|0|68 NbS00059104g0003.1 protein AED:0.17 eAED:0.17 QI:477|1|1|1|1|1|6|419|321; (*TAIR) AT4G03420.1 (e_value=5e-145) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc12g010730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3645491-3647850 transcript_region:SL2.40ch12:3645491..3647850- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00001280g0028.1 protein AED:0.26 eAED:0.28 QI:534|0.42|0.62|1|0.42|0.5|8|225|275; (*SWP) sp|Q0V7T5|Y1864_ARATH (e_value=1e-62) Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1;; (*TAIR) AT4G32000.1 (e_value=4e-79) | Symbols: | Protein kinase superfamily protein | chr4:15474083-15476655 REVERSE LENGTH=418;; (*ITAG) Solyc04g045600.2.1 (e_value=1e-98) genomic_reference:SL2.40ch04 gene_region:33412352-33414560 transcript_region:SL2.40ch04:33412352..33414560- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001280g0029.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|0|0.5|4|0|378 NbS00001280g0022.1 protein AED:0.52 eAED:0.59 QI:66|0.5|0|0.6|0|0|5|0|117; (*TAIR) AT4G17740.2 (e_value=9e-41) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00001280g0030.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.42|0.71|1|1|7|0|344; (*SWP) sp|P46248|AAT5_ARATH (e_value=7e-155) Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2;; (*TAIR) AT4G31990.2 (e_value=5e-156) | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotransferase 5 | chr4:15471074-15473521 REVERSE LENGTH=453;; (*ITAG) Solyc08g041870.2.1 (e_value=3e-166) genomic_reference:SL2.40ch08 gene_region:27494734-27500528 transcript_region:SL2.40ch08:27494734..27500528- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** Q2XTE6_SOLTU); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00001280g0031.1 protein AED:0.17 eAED:0.17 QI:0|0.77|0.8|1|0.22|0.2|10|0|282; (*SWP) sp|B7FA90|HPT1_ORYSJ (e_value=5e-96) Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1;; (*TAIR) AT2G18950.1 (e_value=8e-95) | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate phytyltransferase 1 | chr2:8207491-8210047 FORWARD LENGTH=393;; (*ITAG) Solyc08g041850.2.1 (e_value=4e-149) genomic_reference:SL2.40ch08 gene_region:27386390-27389266 transcript_region:SL2.40ch08:27386390..27389266+ go_terms:GO:0010176 functional_description:"Homogentisate phytyltransferase (AHRD V1 **-* D9IXA0_SOLTU); contains Interpro domain(s) IPR000537 UbiA prenyltransferase "; GO:0010176 NbS00001280g0012.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|129; (*ITAG) Solyc04g053070.1.1 (e_value=8e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00009178g0001.1 protein AED:0.27 eAED:0.33 QI:0|0|0|1|1|1|2|0|124; (*SWP) sp|Q6NN02|Y4445_ARATH (e_value=3e-15) Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana GN=At4g14450 PE=2 SV=1;; (*TAIR) AT4G14450.1 (e_value=2e-16) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8309519-8309896 FORWARD LENGTH=125;; (*ITAG) Solyc06g053700.1.1 (e_value=2e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:33039569-33039916 transcript_region:SL2.40ch06:33039569..33039916+ functional_description:"At1g04330 (Fragment) (AHRD V1 ***- B0FVZ1_ARATH)"; NbC25839744g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|74; (*ITAG) Solyc01g109480.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:88181959-88182809 transcript_region:SL2.40ch01:88181959..88182809+ functional_description:"Suspensor-specific protein (AHRD V1 *-*- Q9FUP6_PHACN)"; NbS00023734g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|352; (*SWP) sp|Q3E936|MAKR1_ARATH (e_value=3e-39) Probable membrane-associated kinase regulator 1 OS=Arabidopsis thaliana GN=MAKR1 PE=1 SV=1;; (*TAIR) AT5G26230.1 (e_value=2e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9173517-9174542 REVERSE LENGTH=341;; (*ITAG) Solyc09g075750.1.1 (e_value=7e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62866845-62867840 transcript_region:SL2.40ch09:62866845..62867840- functional_description:"Unknown Protein (AHRD V1)"; NbS00039841g0008.1 protein AED:0.22 eAED:0.19 QI:93|1|0.83|1|0.8|0.83|6|1258|607; (*TAIR) AT5G08550.1 (e_value=1e-75) | Symbols: ILP1 | GC-rich sequence DNA-binding factor-like protein | chr5:2765981-2770282 REVERSE LENGTH=908;; (*ITAG) Solyc05g009850.2.1 (e_value=5e-179) genomic_reference:SL2.40ch05 gene_region:4065885-4072574 transcript_region:SL2.40ch05:4065885..4072574+ go_terms:GO:0030371 functional_description:"Gc-rich sequence DNA-binding factor (AHRD V1 *-*- Q177S5_AEDAE); contains Interpro domain(s) IPR012890 GC-rich sequence DNA-binding factor-like "; GO:0030371 NbS00039841g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.25|1|1|4|0|273; (*SWP) sp|Q84V83|LAR_DESUN (e_value=1e-115) Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1;; (*TAIR) AT1G75290.1 (e_value=3e-62) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:28253890-28255173 FORWARD LENGTH=318;; (*ITAG) Solyc03g044720.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:14367236-14368165 transcript_region:SL2.40ch03:14367236..14368165- go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** Q9LD14_THUPL); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00039841g0009.1 protein AED:0.18 eAED:0.18 QI:235|0.92|0.92|1|0.76|0.78|14|290|442; (*TAIR) AT1G68820.1 (e_value=0.0) | Symbols: | Transmembrane Fragile-X-F-associated protein | chr1:25865852-25868800 FORWARD LENGTH=468;; (*ITAG) Solyc05g009870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4076564-4086234 transcript_region:SL2.40ch05:4076564..4086234- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 8 (AHRD V1 *--- Q6PIA0_HUMAN); contains Interpro domain(s) IPR019396 Transmembrane Fragile-X-F-associated protein "; GO:0008270 NbS00049455g0003.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|240; (*TAIR) AT5G20700.1 (e_value=1e-38) | Symbols: | Protein of unknown function (DUF581) | chr5:7006178-7007003 REVERSE LENGTH=248;; (*ITAG) Solyc07g042190.2.1 (e_value=3e-131) genomic_reference:SL2.40ch07 gene_region:52541153-52542481 transcript_region:SL2.40ch07:52541153..52542481- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00059213g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0|0|3|360|90 NbS00009373g0004.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.66|1|1|3|0|417; (*SWP) sp|Q9C6Z0|FBK17_ARATH (e_value=0.0) F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1;; (*TAIR) AT1G30090.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:10559746-10560942 REVERSE LENGTH=398;; (*ITAG) Solyc02g021600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13959590-13960798 transcript_region:SL2.40ch02:13959590..13960798+ functional_description:"Kelch-like protein 14 (AHRD V1 *-*- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00055250g0006.1 protein AED:0.34 eAED:0.34 QI:92|1|1|1|0.75|0.6|5|492|161; (*TAIR) AT5G14030.4 (e_value=9e-62) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc02g094440.2.1 (e_value=5e-92) genomic_reference:SL2.40ch02 gene_region:49544950-49547808 transcript_region:SL2.40ch02:49544950..49547808+ go_terms:GO:0016021 functional_description:"Translocon-associated protein subunit beta (AHRD V1 ***- C1C3L8_RANCA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0016021 NbS00026607g0005.1 protein AED:0.06 eAED:0.06 QI:0|1|0|1|1|1|2|195|836; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT3G51740.1 (e_value=0.0) | Symbols: IMK2 | inflorescence meristem receptor-like kinase 2 | chr3:19189248-19191842 FORWARD LENGTH=836;; (*ITAG) Solyc09g015170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8151741-8154870 transcript_region:SL2.40ch09:8151741..8154870+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00026607g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|220; (*SWP) sp|O80915|PR1B4_ARATH (e_value=1e-65) PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1;; (*TAIR) AT2G38360.1 (e_value=1e-66) | Symbols: PRA1.B4 | prenylated RAB acceptor 1.B4 | chr2:16069840-16070502 REVERSE LENGTH=220;; (*ITAG) Solyc10g076360.1.1 (e_value=4e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58654946-58655620 transcript_region:SL2.40ch10:58654946..58655620+ functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00011696g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|160; (*ITAG) Solyc12g019720.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00011696g0012.1 protein AED:0.29 eAED:0.29 QI:271|1|0.66|1|1|1|3|26|98; (*ITAG) Solyc09g007480.2.1 (e_value=5e-20) genomic_reference:SL2.40ch09 gene_region:1040671-1042715 transcript_region:SL2.40ch09:1040671..1042715+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011696g0013.1 protein AED:0.29 eAED:0.29 QI:221|1|1|1|1|1|3|489|227; (*SWP) sp|B4FUS3|CNR8_MAIZE (e_value=3e-87) Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1;; (*TAIR) AT2G37110.1 (e_value=4e-100) | Symbols: | PLAC8 family protein | chr2:15592689-15593726 FORWARD LENGTH=242;; (*ITAG) Solyc09g007490.2.1 (e_value=2e-129) genomic_reference:SL2.40ch09 gene_region:1044320-1047604 transcript_region:SL2.40ch09:1044320..1047604+ functional_description:"Cell number regulator 8 (AHRD V1 **-- B4FUS3_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00011696g0014.1 protein AED:0.27 eAED:0.27 QI:22|0|0.5|1|1|1|2|0|129; (*ITAG) Solyc09g007500.2.1 (e_value=3e-19) genomic_reference:SL2.40ch09 gene_region:1075063-1077700 transcript_region:SL2.40ch09:1075063..1077700- go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006779 DNA binding protein S1FA "; GO:0005634 NbS00019697g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.25|0.4|1|0|0|5|533|753; (*SWP) sp|P0C8Q3|PP326_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1;; (*TAIR) AT4G19890.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10786948-10789053 REVERSE LENGTH=701;; (*ITAG) Solyc02g068890.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33349726-33352122 transcript_region:SL2.40ch02:33349726..33352122+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00019697g0007.1 protein AED:0.11 eAED:0.11 QI:1280|1|1|1|0.8|0.66|6|461|325; (*SWP) sp|P42620|YQJG_ECOLI (e_value=1e-105) Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=1 SV=1;; (*TAIR) AT4G19880.1 (e_value=0.0) | Symbols: | Glutathione S-transferase family protein | chr4:10784691-10786376 REVERSE LENGTH=356;; (*ITAG) Solyc02g068900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33357285-33361559 transcript_region:SL2.40ch02:33357285..33361559+ go_terms:GO:0004364 functional_description:"Glutathione transferase (AHRD V1 **** Q2KKB6_THLCA); contains Interpro domain(s) IPR016639 Glutathione S-transferase, predicted "; GO:0004364 NbS00001538g0002.1 protein AED:0.19 eAED:0.19 QI:248|1|1|1|1|1|11|261|788; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=2e-31) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=0.0) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc01g088800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75298298-75303659 transcript_region:SL2.40ch01:75298298..75303659+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C1GL98_PARBD); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00000068g0007.1 protein AED:0.33 eAED:0.33 QI:274|1|1|1|0.75|1|5|392|237; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=1e-38) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT5G19140.1 (e_value=7e-139) | Symbols: ATAILP1, AILP1 | Aluminium induced protein with YGL and LRDR motifs | chr5:6423398-6425785 FORWARD LENGTH=234;; (*ITAG) Solyc01g079880.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:71536915-71541059 transcript_region:SL2.40ch01:71536915..71541059- functional_description:"Asparagine synthetase (AHRD V1 *--- Q9ZST6_ARATH)"; NbS00000068g0101.1 protein AED:0.37 eAED:0.37 QI:104|1|0.66|1|0|0|3|88|257 NbS00000068g0108.1 protein AED:0.35 eAED:0.37 QI:7|0.8|0.81|1|0.8|0.72|11|431|381 NbS00021815g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.45|1|0.7|0.54|11|0|1319; (*TAIR) AT5G64420.1 (e_value=0.0) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00031592g0005.1 protein AED:0.11 eAED:0.11 QI:87|0.83|0.85|1|0.5|0.57|7|177|486; (*SWP) sp|Q8N9H8|MUT7_HUMAN (e_value=1e-14) Probable exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=1 SV=3;; (*TAIR) AT5G24340.1 (e_value=0.0) | Symbols: | 3'-5' exonuclease domain-containing protein | chr5:8297328-8300156 FORWARD LENGTH=505;; (*ITAG) Solyc03g082850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46244596-46250538 transcript_region:SL2.40ch03:46244596..46250538- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease family protein (AHRD V1 *--- Q23B12_TETTH); contains Interpro domain(s) IPR002782 Protein of unknown function DUF82 "; GO:0003676,GO:0005622 NbS00000327g0007.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|3|0|730; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=1e-51) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT3G57830.1 (e_value=9e-165) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:21419778-21422320 FORWARD LENGTH=662;; (*ITAG) Solyc03g064010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:34594740-34598681 transcript_region:SL2.40ch03:34594740..34598681+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00000327g0002.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.75|1|1|1|4|408|247; (*SWP) sp|Q8LBZ4|OTU_ARATH (e_value=2e-65) OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1;; (*TAIR) AT3G57810.1 (e_value=3e-67) | Symbols: | Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=274;; (*ITAG) Solyc11g007590.1.1 (e_value=7e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1850470-1852640 transcript_region:SL2.40ch11:1850470..1852640+ functional_description:"OTU domain-containing protein 4 (AHRD V1 *-*- OTUD4_HUMAN); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00004868g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.81|1|0.9|0.90|11|0|678; (*SWP) sp|Q55C58|VPS16_DICDI (e_value=9e-143) Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2;; (*TAIR) AT2G38020.1 (e_value=0.0) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858;; (*ITAG) Solyc07g056220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61387158-61398184 transcript_region:SL2.40ch07:61387158..61398184- go_terms:GO:0051015 functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NFB5_AJECG); contains Interpro domain(s) IPR016534 Vacuolar protein sorting-associated protein 16 "; GO:0051015 NbS00004868g0008.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|4|0|164; (*SWP) sp|Q55C58|VPS16_DICDI (e_value=6e-31) Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2;; (*TAIR) AT2G38020.1 (e_value=6e-70) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858;; (*ITAG) Solyc07g056220.2.1 (e_value=2e-96) genomic_reference:SL2.40ch07 gene_region:61387158-61398184 transcript_region:SL2.40ch07:61387158..61398184- go_terms:GO:0051015 functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NFB5_AJECG); contains Interpro domain(s) IPR016534 Vacuolar protein sorting-associated protein 16 "; GO:0051015 NbS00022062g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|198; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=3e-37) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=2e-38) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc11g005750.1.1 (e_value=1e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:591151-592949 transcript_region:SL2.40ch11:591151..592949- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00022062g0007.1 protein AED:0.20 eAED:0.28 QI:244|0|0.5|1|0|0|2|0|80; (*SWP) sp|Q9LXD9|PME51_ARATH (e_value=2e-33) Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1;; (*TAIR) AT5G09760.1 (e_value=1e-34) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:3032446-3034364 FORWARD LENGTH=551;; (*ITAG) Solyc11g005750.1.1 (e_value=1e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:591151-592949 transcript_region:SL2.40ch11:591151..592949- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 ***- D7MRW1_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00056189g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.8|1|1|1|5|270|511; (*SWP) sp|Q9SA22|P2C06_ARATH (e_value=0.0) Probable protein phosphatase 2C 6 OS=Arabidopsis thaliana GN=At1g16220 PE=2 SV=1;; (*TAIR) AT1G16220.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:5548653-5550553 FORWARD LENGTH=491;; (*ITAG) Solyc10g005640.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:514112-519337 transcript_region:SL2.40ch10:514112..519337+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00056189g0002.1 protein AED:0.21 eAED:0.21 QI:277|0.8|0.75|0.93|1|1|16|632|735; (*SWP) sp|Q9FMA3|PEX5_ARATH (e_value=0.0) Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1;; (*TAIR) AT5G56290.1 (e_value=0.0) | Symbols: PEX5, ATPEX5 | peroxin 5 | chr5:22786655-22791972 FORWARD LENGTH=728;; (*ITAG) Solyc10g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:519710-532795 transcript_region:SL2.40ch10:519710..532795- go_terms:GO:0005052 functional_description:"Peroxisomal targeting signal 1 receptor (AHRD V1 **** Q9ZTK6_TOBAC); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005052 NbS00014179g0003.1 protein AED:0.34 eAED:0.34 QI:70|1|0.88|1|1|1|9|0|300; (*SWP) sp|Q8VYR2|NUDT9_ARATH (e_value=3e-126) Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1;; (*TAIR) AT3G46200.1 (e_value=3e-127) | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog 9 | chr3:16969283-16971017 FORWARD LENGTH=311;; (*ITAG) Solyc11g072970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53198034-53204116 transcript_region:SL2.40ch11:53198034..53204116- go_terms:GO:0016787 functional_description:"Nucleoside diphosphate-linked moiety X motif 22 (AHRD V1 ***- NUD22_RAT); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00008950g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|70|164; (*TAIR) AT5G43680.2 (e_value=4e-19) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. | chr5:17544074-17545354 FORWARD LENGTH=232;; (*ITAG) Solyc04g080950.2.1 (e_value=1e-51) genomic_reference:SL2.40ch04 gene_region:62601559-62605364 transcript_region:SL2.40ch04:62601559..62605364- functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG95_ARATH)"; NbS00008950g0012.1 protein AED:0.23 eAED:0.25 QI:174|0.88|0.88|1|0.52|0.61|18|57|456; (*SWP) sp|Q93Z80|EDL10_ARATH (e_value=1e-129) Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1;; (*TAIR) AT3G05160.1 (e_value=8e-131) | Symbols: | Major facilitator superfamily protein | chr3:1453267-1456997 REVERSE LENGTH=458;; (*ITAG) Solyc01g098500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80767246-80771459 transcript_region:SL2.40ch01:80767246..80771459+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00008950g0013.1 protein AED:0.23 eAED:0.29 QI:76|0.87|0.88|1|0.87|0.88|9|0|306; (*SWP) sp|P42390|TRPA_MAIZE (e_value=4e-99) Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2;; (*TAIR) AT3G54640.1 (e_value=9e-142) | Symbols: TSA1, TRP3 | tryptophan synthase alpha chain | chr3:20223331-20225303 REVERSE LENGTH=312;; (*ITAG) Solyc01g098550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80797121-80803117 transcript_region:SL2.40ch01:80797121..80803117+ go_terms:GO:0008152,GO:0006568 functional_description:"Tryptophan synthase alpha chain (AHRD V1 ***- Q8LA83_ARATH); contains Interpro domain(s) IPR002028 Tryptophan synthase, alpha chain "; GO:0008152,GO:0006568 NbS00046208g0003.1 protein AED:0.17 eAED:0.22 QI:0|0|0|1|0.5|0.33|3|0|146; (*SWP) sp|O81832|Y4729_ARATH (e_value=2e-29) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=2e-30) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063750.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:63340297-63343608 transcript_region:SL2.40ch07:63340297..63343608- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00048938g0002.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.66|0.5|0.33|3|0|191; (*SWP) sp|Q43716|UFOG_PETHY (e_value=4e-34) Anthocyanidin 3-O-glucosyltransferase OS=Petunia hybrida GN=RT PE=2 SV=1;; (*TAIR) AT5G54010.1 (e_value=8e-35) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:21919819-21921180 REVERSE LENGTH=453;; (*ITAG) Solyc10g008860.1.1 (e_value=3e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2907643-2909013 transcript_region:SL2.40ch10:2907643..2909013- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8H6A4_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00023537g0007.1 protein AED:0.11 eAED:0.11 QI:295|1|1|1|0.66|0.57|7|220|255; (*SWP) sp|Q17QK9|NAA60_BOVIN (e_value=3e-19) N-alpha-acetyltransferase 60 OS=Bos taurus GN=NAA60 PE=2 SV=1;; (*TAIR) AT5G16800.2 (e_value=7e-107) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:5524509-5526295 REVERSE LENGTH=270;; (*ITAG) Solyc03g097140.2.1 (e_value=3e-161) genomic_reference:SL2.40ch03 gene_region:52917017-52920378 transcript_region:SL2.40ch03:52917017..52920378+ go_terms:GO:0008152 functional_description:"N-acetyltransferase 15 (AHRD V1 ***- D3PJE2_9MAXI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00023537g0003.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0|0.66|1|1|3|0|87; (*ITAG) Solyc03g122220.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64164381-64164724 transcript_region:SL2.40ch03:64164381..64164724- go_terms:GO:0008270 functional_description:"GRF zinc finger containing protein (AHRD V1 *-*- Q2A9I2_BRAOL); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00001328g0002.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|310; (*ITAG) Solyc03g098490.1.1 (e_value=2e-75) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00001328g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|267; (*ITAG) Solyc03g098490.1.1 (e_value=1e-65) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00010058g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|433; (*SWP) sp|Q8S9G6|T5AT_TAXWC (e_value=7e-62) Taxadien-5-alpha-ol O-acetyltransferase OS=Taxus wallichiana var. chinensis PE=2 SV=1;; (*TAIR) AT2G40230.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16803285-16804586 REVERSE LENGTH=433;; (*ITAG) Solyc06g051130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:30740803-30742107 transcript_region:SL2.40ch06:30740803..30742107- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LEH4_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00014538g0012.1 protein AED:0.11 eAED:0.12 QI:0|0.85|0.75|1|0.85|0.75|8|457|367; (*SWP) sp|Q55512|DHAS_SYNY3 (e_value=4e-98) Aspartate-semialdehyde dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asd PE=3 SV=2;; (*TAIR) AT1G14810.1 (e_value=0.0) | Symbols: | semialdehyde dehydrogenase family protein | chr1:5102684-5104633 REVERSE LENGTH=375;; (*ITAG) Solyc01g005250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:191856-195078 transcript_region:SL2.40ch01:191856..195078- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Aspartate-semialdehyde dehydrogenase (AHRD V1 ***- B6TWW1_MAIZE); contains Interpro domain(s) IPR005986 Aspartate-semialdehyde dehydrogenase, bacterial "; GO:0008152,GO:0005737,GO:0055114 NbS00014538g0010.1 protein AED:0.07 eAED:0.11 QI:0|0.33|0|1|1|1|4|0|365; (*SWP) sp|Q9LS10|MT810_ARATH (e_value=1e-83) Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1;; (*TAIR) AT1G68040.1 (e_value=2e-95) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:25502876-25505224 FORWARD LENGTH=363;; (*ITAG) Solyc01g005230.2.1 (e_value=3e-85) genomic_reference:SL2.40ch01 gene_region:181503-183049 transcript_region:SL2.40ch01:181503..183049+ go_terms:GO:0008757 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** A7XZE9_9MAGN); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00014538g0011.1 protein AED:0.20 eAED:0.20 QI:444|1|0.92|1|0.84|0.78|14|490|545; (*SWP) sp|O23653|AK2_ARATH (e_value=0.0) Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2;; (*TAIR) AT5G14060.2 (e_value=0.0) | Symbols: CARAB-AK-LYS | Aspartate kinase family protein | chr5:4536143-4538993 FORWARD LENGTH=544;; (*ITAG) Solyc01g005240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:185714-191685 transcript_region:SL2.40ch01:185714..191685+ go_terms:GO:0008652,GO:0008152 functional_description:"Aspartokinase (AHRD V1 ***- B9RGY9_RICCO); contains Interpro domain(s) IPR001341 Aspartate kinase region "; GO:0008652,GO:0008152 NbS00038798g0008.1 protein AED:0.14 eAED:0.14 QI:33|0.5|0.6|1|0.75|0.8|5|111|363; (*SWP) sp|P92934|AAP6_ARATH (e_value=4e-114) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=3e-115) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc01g106800.2.1 (e_value=4e-148) genomic_reference:SL2.40ch01 gene_region:86319498-86323512 transcript_region:SL2.40ch01:86319498..86323512- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00038798g0007.1 protein AED:0.29 eAED:0.29 QI:288|1|1|1|0.75|0.6|5|382|215; (*TAIR) AT1G50020.1 (e_value=2e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18520144-18521600 REVERSE LENGTH=209;; (*ITAG) Solyc01g106790.2.1 (e_value=3e-97) genomic_reference:SL2.40ch01 gene_region:86315399-86318874 transcript_region:SL2.40ch01:86315399..86318874+ functional_description:"Tubulin alpha-6 chain (AHRD V1 **-- B6SR73_MAIZE)"; NbS00039927g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|173; (*TAIR) AT1G31817.1 (e_value=3e-50) | Symbols: NFD3 | Ribosomal L18p/L5e family protein | chr1:11414932-11416356 REVERSE LENGTH=314;; (*ITAG) Solyc08g075720.1.1 (e_value=2e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57012295-57012765 transcript_region:SL2.40ch08:57012295..57012765- go_terms:GO:0048027 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- A3UD87_9RHOB); contains Interpro domain(s) IPR001971 Ribosomal protein S11 "; GO:0048027 NbS00039927g0005.1 protein AED:0.17 eAED:0.35 QI:0|0.33|0.25|1|0.33|0.75|4|0|155; (*SWP) sp|P41129|RL132_BRANA (e_value=2e-54) 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1;; (*TAIR) AT3G49010.3 (e_value=1e-53) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc08g075700.2.1 (e_value=1e-67) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00002439g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|0|0.33|3|0|357; (*SWP) sp|Q9M2W8|Y3990_ARATH (e_value=3e-44) BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana GN=At3g49900 PE=2 SV=1;; (*TAIR) AT3G49900.1 (e_value=2e-45) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:18500635-18502614 REVERSE LENGTH=517;; (*ITAG) Solyc02g092420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48062613-48065896 transcript_region:SL2.40ch02:48062613..48065896- go_terms:GO:0005515 functional_description:"Os07g0587200 protein (Fragment) (AHRD V1 *--- Q0D523_ORYSJ); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00006369g0018.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.63|0.81|0.8|0.81|11|243|776; (*SWP) sp|Q55FG3|VP13C_DICDI (e_value=2e-31) Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1;; (*TAIR) AT5G24740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36878299-36887767 transcript_region:SL2.40ch11:36878299..36887767+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 ***- D3BE65_POLPA)"; NbS00006369g0017.1 protein AED:0.12 eAED:0.13 QI:0|0.64|0.52|0.86|0.62|0.63|38|0|2900; (*TAIR) AT5G24740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36829423-36874249 transcript_region:SL2.40ch11:36829423..36874249+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 *-*- C0NJR3_AJECG)"; NbS00057232g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.42|0.71|0.66|0.85|7|0|279; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=4e-73) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.1 (e_value=3e-153) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=519;; (*ITAG) Solyc08g062670.2.1 (e_value=3e-180) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00043421g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|161; (*SWP) sp|Q9C7W2|ERF61_ARATH (e_value=4e-24) Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1;; (*TAIR) AT1G64380.1 (e_value=3e-25) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:23890981-23891988 REVERSE LENGTH=335;; (*ITAG) Solyc08g082210.2.1 (e_value=4e-28) genomic_reference:SL2.40ch08 gene_region:62221339-62222646 transcript_region:SL2.40ch08:62221339..62222646- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00043421g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0.25|1|1|1|4|186|197; (*SWP) sp|Q84MC7|PYL9_ARATH (e_value=2e-73) Abscisic acid receptor PYL9 OS=Arabidopsis thaliana GN=PYL9 PE=1 SV=1;; (*TAIR) AT1G01360.1 (e_value=1e-74) | Symbols: RCAR1, PYL9 | regulatory component of ABA receptor 1 | chr1:142138-142914 FORWARD LENGTH=187;; (*ITAG) Solyc08g082180.2.1 (e_value=1e-91) genomic_reference:SL2.40ch08 gene_region:62203729-62206170 transcript_region:SL2.40ch08:62203729..62206170- go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYL9 (AHRD V1 **-- PYL9_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00043421g0013.1 protein AED:0.10 eAED:0.10 QI:0|0.86|0.75|1|0.93|0.93|16|236|481; (*SWP) sp|P20664|PRI1_MOUSE (e_value=9e-92) DNA primase small subunit OS=Mus musculus GN=Prim1 PE=1 SV=1;; (*TAIR) AT5G41880.1 (e_value=0.0) | Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16761071-16764074 FORWARD LENGTH=451;; (*ITAG) Solyc08g082200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62213441-62219493 transcript_region:SL2.40ch08:62213441..62219493+ go_terms:GO:0003896 functional_description:"DNA primase (AHRD V1 **** B6T4S3_MAIZE); contains Interpro domain(s) IPR014052 DNA primase, small subunit, eukaryotic and archaeal "; GO:0003896 NbS00043421g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|204 NbS00043421g0006.1 protein AED:0.39 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|162 NbS00027024g0006.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.8|1|0.5|0.8|5|354|248; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=8e-86) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=6e-87) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc07g064040.2.1 (e_value=2e-128) genomic_reference:SL2.40ch07 gene_region:63560820-63564425 transcript_region:SL2.40ch07:63560820..63564425+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00027024g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|232; (*ITAG) Solyc11g015900.1.1 (e_value=5e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7418510-7419655 transcript_region:SL2.40ch11:7418510..7419655+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00027024g0003.1 protein AED:0.33 eAED:0.33 QI:0|1|0.33|1|1|1|3|0|259; (*SWP) sp|Q9LXX5|PPD6_ARATH (e_value=1e-129) PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1;; (*TAIR) AT3G56650.1 (e_value=1e-130) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:20984807-20985913 FORWARD LENGTH=262;; (*ITAG) Solyc06g065490.2.1 (e_value=3e-157) genomic_reference:SL2.40ch06 gene_region:37270445-37273099 transcript_region:SL2.40ch06:37270445..37273099- go_terms:GO:0019898 functional_description:"PsbP domain-containing protein 6, chloroplastic (AHRD V1 ***- PPD6_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00004200g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|0.66|1|1|3|22|66; (*SWP) sp|Q5BBV9|RUVB1_EMENI (e_value=1e-17) RuvB-like helicase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rvb1 PE=3 SV=3;; (*TAIR) AT5G22330.1 (e_value=3e-20) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458;; (*ITAG) Solyc11g069370.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51054007-51059005 transcript_region:SL2.40ch11:51054007..51059005+ go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00004200g0017.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.8|1|1|1|5|160|223; (*SWP) sp|Q9M815|PCR8_ARATH (e_value=3e-54) Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8 PE=1 SV=2;; (*TAIR) AT1G52200.1 (e_value=2e-55) | Symbols: | PLAC8 family protein | chr1:19442271-19443407 REVERSE LENGTH=190;; (*ITAG) Solyc03g120600.2.1 (e_value=9e-68) genomic_reference:SL2.40ch03 gene_region:63009326-63010426 transcript_region:SL2.40ch03:63009326..63010426- functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00004200g0021.1 protein AED:0.12 eAED:0.12 QI:176|0.66|0.85|0.85|0.83|0.71|7|405|246; (*SWP) sp|B0SW60|RUTB_CAUSK (e_value=6e-16) Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB OS=Caulobacter sp. (strain K31) GN=rutB PE=3 SV=1;; (*TAIR) AT3G16190.1 (e_value=2e-81) | Symbols: | Isochorismatase family protein | chr3:5489883-5491195 REVERSE LENGTH=196;; (*ITAG) Solyc03g120540.2.1 (e_value=4e-112) genomic_reference:SL2.40ch03 gene_region:62962251-62964678 transcript_region:SL2.40ch03:62962251..62964678+ go_terms:GO:0008936 functional_description:"Isochorismatase hydrolase-like (AHRD V1 ***- Q6K7V7_ORYSJ); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00004200g0019.1 protein AED:0.16 eAED:0.16 QI:180|1|1|1|1|1|2|96|333; (*TAIR) AT5G41270.1 (e_value=9e-39) | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16507797-16508813 FORWARD LENGTH=258;; (*ITAG) Solyc08g081040.2.1 (e_value=5e-125) genomic_reference:SL2.40ch08 gene_region:61329962-61331992 transcript_region:SL2.40ch08:61329962..61331992+ functional_description:"Genomic DNA chromosome 5 TAC clone K1O13 (AHRD V1 *-*- Q9FHD6_ARATH); contains Interpro domain(s) IPR007175 RNAse P, Rpr2/Rpp21 subunit "; NbS00004200g0020.1 protein AED:0.16 eAED:0.17 QI:299|1|0.66|1|1|1|3|0|613; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00004200g0007.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|253; (*SWP) sp|Q9S840|SPL2_ARATH (e_value=3e-38) Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1;; (*TAIR) AT5G43270.1 (e_value=2e-39) | Symbols: SPL2 | squamosa promoter binding protein-like 2 | chr5:17360527-17362143 REVERSE LENGTH=419;; (*ITAG) Solyc05g015510.2.1 (e_value=1e-78) genomic_reference:SL2.40ch05 gene_region:10767268-10772201 transcript_region:SL2.40ch05:10767268..10772201- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding-like protein 11 (AHRD V1 ***- B6TF72_MAIZE); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00004200g0018.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|0.5|0.66|3|0|234; (*TAIR) AT4G11560.1 (e_value=9e-20) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587;; (*ITAG) Solyc08g081050.2.1 (e_value=1e-38) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00032727g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|318; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=3e-34) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT4G33565.1 (e_value=1e-36) | Symbols: | RING/U-box superfamily protein | chr4:16136821-16137924 FORWARD LENGTH=367;; (*ITAG) Solyc04g014220.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4521572-4522696 transcript_region:SL2.40ch04:4521572..4522696+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011282g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|78; (*ITAG) Solyc01g101260.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:82833017-82833752 transcript_region:SL2.40ch01:82833017..82833752+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011282g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|74; (*ITAG) Solyc01g101260.2.1 (e_value=6e-21) genomic_reference:SL2.40ch01 gene_region:82833017-82833752 transcript_region:SL2.40ch01:82833017..82833752+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008892g0001.1 protein AED:0.05 eAED:0.05 QI:186|0.81|0.66|1|0.81|0.75|12|575|335; (*SWP) sp|P55034|PSMD4_ARATH (e_value=6e-60) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1;; (*TAIR) AT4G38630.1 (e_value=4e-61) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386;; (*ITAG) Solyc02g083710.2.1 (e_value=6e-72) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00008892g0111.1 protein AED:0.12 eAED:0.12 QI:200|1|1|1|1|1|4|374|171 NbS00008892g0112.1 protein AED:0.17 eAED:0.17 QI:183|0.9|0.90|1|0.8|0.63|11|66|407 NbS00008892g0113.1 protein AED:0.21 eAED:0.21 QI:269|0.57|0.37|1|0.57|0.5|8|0|705 NbS00021013g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|0.75|0.6|5|296|706; (*SWP) sp|F4I6M4|SP2L_ARATH (e_value=2e-23) Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana GN=SP2L PE=2 SV=1;; (*TAIR) AT1G27210.1 (e_value=1e-100) | Symbols: | ARM repeat superfamily protein | chr1:9455669-9457917 REVERSE LENGTH=625;; (*ITAG) Solyc05g006550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1184571-1188615 transcript_region:SL2.40ch05:1184571..1188615+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00032049g0002.1 protein AED:0.29 eAED:0.48 QI:0|0|0|1|0|0|5|0|264; (*SWP) sp|Q9SX38|DRL4_ARATH (e_value=7e-18) Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=2;; (*TAIR) AT1G50180.1 (e_value=5e-19) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc08g005500.2.1 (e_value=3e-47) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00032049g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|3|0|130; (*ITAG) Solyc08g005500.2.1 (e_value=3e-43) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00020213g0008.1 protein AED:0.11 eAED:0.11 QI:434|0.66|0.75|1|1|1|4|218|163; (*SWP) sp|O80366|ARR9_ARATH (e_value=1e-31) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=8e-33) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc10g079600.1.1 (e_value=3e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60427395-60429006 transcript_region:SL2.40ch10:60427395..60429006- go_terms:GO:0006355 functional_description:"Response regulator 6 (AHRD V1 ***- Q9FRY9_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00001542g0001.1 protein AED:0.06 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|1081; (*TAIR) AT3G22430.1 (e_value=2e-37) | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). | chr3:7953455-7957605 FORWARD LENGTH=510;; (*ITAG) Solyc11g066990.1.1 (e_value=2e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49847837-49848794 transcript_region:SL2.40ch11:49847837..49848794+ functional_description:"Protein SUPPRESSOR OF GENE SILENCING 3 (AHRD V1 **-- SGS3_ARATH)"; NbS00001542g0014.1 protein AED:0.14 eAED:0.14 QI:1022|1|1|1|0.58|0.5|18|613|695; (*SWP) sp|Q2PCF1|PDR2_NICPL (e_value=0.0) Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1;; (*TAIR) AT1G66950.1 (e_value=0.0) | Symbols: PDR11, ATPDR11 | pleiotropic drug resistance 11 | chr1:24978239-24984461 FORWARD LENGTH=1454;; (*ITAG) Solyc11g067000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49852009-49861096 transcript_region:SL2.40ch11:49852009..49861096- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00001830g0013.1 protein AED:0.32 eAED:0.38 QI:0|0|0|0.33|1|1|3|0|204 NbS00001830g0007.1 protein AED:0.21 eAED:0.24 QI:455|0.6|0.83|1|0.6|0.5|6|388|198; (*TAIR) AT1G33490.1 (e_value=2e-80) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2062 (InterPro:IPR018639); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10140.1); Has 88 Blast hits to 88 proteins in 29 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:12150941-12152276 REVERSE LENGTH=175;; (*ITAG) Solyc06g064450.2.1 (e_value=3e-96) genomic_reference:SL2.40ch06 gene_region:36526384-36531754 transcript_region:SL2.40ch06:36526384..36531754- functional_description:"Cytoplasmic membrane protein (AHRD V1 *-*- B6TYL5_MAIZE)"; NbS00001830g0012.1 protein AED:0.32 eAED:0.32 QI:0|1|0.8|1|0.75|0.6|5|383|228; (*SWP) sp|P49692|RL7A1_ARATH (e_value=4e-138) 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2;; (*TAIR) AT2G47610.1 (e_value=3e-139) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g064460.2.1 (e_value=2e-149) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbC24690226g0001.1 protein AED:0.32 eAED:0.65 QI:91|-1|0|1|-1|0|1|0|38 NbS00014264g0010.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|1|0.66|3|0|494; (*SWP) sp|O49859|C82A4_SOYBN (e_value=2e-135) Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=2e-122) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc04g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014264g0011.1 protein AED:0.25 eAED:0.25 QI:269|1|1|1|1|1|8|384|354; (*SWP) sp|Q4KMD3|U1SBP_DANRE (e_value=2e-44) U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio rerio GN=snrnp35 PE=2 SV=1;; (*TAIR) AT2G43370.1 (e_value=9e-110) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18013431-18015376 FORWARD LENGTH=333;; (*ITAG) Solyc09g098390.2.1 (e_value=2e-143) genomic_reference:SL2.40ch09 gene_region:67491180-67496208 transcript_region:SL2.40ch09:67491180..67496208- go_terms:GO:0003676,GO:0000166 functional_description:"U1 small nuclear ribonucleoprotein protein (AHRD V1 *--- D3B3S8_POLPA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00014264g0007.1 protein AED:0.33 eAED:0.33 QI:44|0|0.25|0.5|1|1|4|0|202 NbS00001293g0007.1 protein AED:0.17 eAED:0.17 QI:218|0.92|0.85|1|0.38|0.64|14|304|940; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=4e-66) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT2G21300.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862;; (*ITAG) Solyc01g110380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88860841-88867416 transcript_region:SL2.40ch01:88860841..88867416+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00001293g0008.1 protein AED:0.67 eAED:0.67 QI:0|0|0.5|0.5|0|1|2|10|66 NbS00002356g0003.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.75|1|1|1|4|0|301; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=4e-57) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT2G17760.1 (e_value=1e-104) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:7713488-7716269 FORWARD LENGTH=513;; (*ITAG) Solyc02g083460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41436441-41440462 transcript_region:SL2.40ch02:41436441..41440462+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LAA8_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00049200g0005.1 protein AED:0.17 eAED:0.17 QI:261|0.66|0.25|1|0.66|0.75|4|0|327; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=1e-40) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT4G27520.1 (e_value=1e-41) | Symbols: ENODL2, AtENODL2 | early nodulin-like protein 2 | chr4:13750668-13751819 REVERSE LENGTH=349;; (*ITAG) Solyc12g013900.1.1 (e_value=3e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4705140-4706523 transcript_region:SL2.40ch12:4705140..4706523- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 **-- Q30GX2_SOLPI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00017232g0002.1 protein AED:0.30 eAED:0.30 QI:197|0.75|0.6|1|1|1|5|0|345; (*TAIR) AT3G14850.2 (e_value=8e-134) | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41 | chr3:4995615-4997611 FORWARD LENGTH=356;; (*ITAG) Solyc07g062220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62235981-62240723 transcript_region:SL2.40ch07:62235981..62240723- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026430g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.94|0.88|0.94|1|1|18|270|828; (*SWP) sp|Q2KIZ8|MCM6_BOVIN (e_value=0.0) DNA replication licensing factor MCM6 OS=Bos taurus GN=MCM6 PE=2 SV=1;; (*TAIR) AT5G44635.1 (e_value=0.0) | Symbols: MCM6 | minichromosome maintenance (MCM2/3/5) family protein | chr5:18006431-18010542 REVERSE LENGTH=831;; (*ITAG) Solyc02g082180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40461974-40467518 transcript_region:SL2.40ch02:40461974..40467518+ go_terms:GO:0042802 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q2TWS7_ASPOR); contains Interpro domain(s) IPR008049 MCM protein 6 "; GO:0042802 NbS00018940g0019.1 protein AED:0.20 eAED:0.21 QI:9|1|0.8|1|1|1|5|626|110; (*SWP) sp|P62323|SMD3_XENLA (e_value=4e-30) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1;; (*TAIR) AT1G20580.1 (e_value=8e-50) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128979-7130371 FORWARD LENGTH=131;; (*ITAG) Solyc02g084020.2.1 (e_value=1e-55) genomic_reference:SL2.40ch02 gene_region:41817943-41822321 transcript_region:SL2.40ch02:41817943..41822321- go_terms:GO:0003729,GO:0019899 functional_description:"Small nuclear ribonucleoprotein Sm D3 (AHRD V1 ***- B6UDW2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0003729,GO:0019899 NbS00018940g0021.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.6|1|1|1|5|384|255; (*SWP) sp|Q755P0|AF9_ASHGO (e_value=9e-31) Protein AF-9 homolog OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YAF9 PE=3 SV=1;; (*TAIR) AT5G45600.2 (e_value=5e-103) | Symbols: GAS41 | YEATS family protein | chr5:18488059-18489666 FORWARD LENGTH=267;; (*ITAG) Solyc02g084000.2.1 (e_value=2e-149) genomic_reference:SL2.40ch02 gene_region:41800229-41803502 transcript_region:SL2.40ch02:41800229..41803502+ go_terms:GO:0005515,GO:0004402 functional_description:"YEATS domain-containing protein (AHRD V1 **-- C1EEG0_9CHLO); contains Interpro domain(s) IPR005033 YEATS "; GO:0005515,GO:0004402 NbS00018940g0004.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|98; (*SWP) sp|P33080|AX10A_SOYBN (e_value=9e-22) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=2e-45) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc02g084010.1.1 (e_value=6e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41812801-41813109 transcript_region:SL2.40ch02:41812801..41813109+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00018940g0020.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.4|1|1|1|5|0|264; (*SWP) sp|Q9SL43|MSRA5_ARATH (e_value=1e-115) Peptide methionine sulfoxide reductase A5 OS=Arabidopsis thaliana GN=MSRA5 PE=2 SV=1;; (*TAIR) AT2G18030.1 (e_value=8e-117) | Symbols: | Peptide methionine sulfoxide reductase family protein | chr2:7840207-7841496 FORWARD LENGTH=254;; (*ITAG) Solyc02g084030.2.1 (e_value=6e-148) genomic_reference:SL2.40ch02 gene_region:41824425-41829560 transcript_region:SL2.40ch02:41824425..41829560+ go_terms:GO:0008113 functional_description:"Peptide methionine sulfoxide reductase msrA (AHRD V1 *-** C7NTZ7_HALUD); contains Interpro domain(s) IPR002569 Methionine sulphoxide reductase A "; GO:0008113 NbS00058787g0003.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|0|0|2|0|411; (*SWP) sp|Q84W40|ATL11_ARATH (e_value=1e-53) RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2;; (*TAIR) AT1G72200.1 (e_value=8e-55) | Symbols: | RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404;; (*ITAG) Solyc12g087860.1.1 (e_value=4e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61801131-61802252 transcript_region:SL2.40ch12:61801131..61802252+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00015786g0003.1 protein AED:0.09 eAED:0.09 QI:109|1|1|1|0.83|0.85|7|589|364; (*SWP) sp|Q54PM7|NAGK_DICDI (e_value=3e-55) N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2;; (*TAIR) AT1G30540.1 (e_value=2e-160) | Symbols: | Actin-like ATPase superfamily protein | chr1:10816951-10819172 REVERSE LENGTH=351;; (*ITAG) Solyc07g044750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55121747-55127054 transcript_region:SL2.40ch07:55121747..55127054- functional_description:"ATPase BadF/BadG/BcrA/BcrD-type family (AHRD V1 ***- D7KFL2_ARALY); contains Interpro domain(s) IPR002731 ATPase, BadF/BadG/BcrA/BcrD type "; NbS00002733g0024.1 protein AED:0.16 eAED:0.16 QI:0|0.4|0.33|1|0.8|0.83|6|0|460; (*TAIR) AT3G49050.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18181498-18183613 FORWARD LENGTH=477;; (*ITAG) Solyc03g025510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7278415-7283352 transcript_region:SL2.40ch03:7278415..7283352- go_terms:GO:0005516 functional_description:"Calmodulin-binding heat shock protein (AHRD V1 **-* Q1RN86_GOSHI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00002733g0023.1 protein AED:0.19 eAED:0.19 QI:301|0.9|0.81|1|0.9|0.81|11|0|963; (*TAIR) AT5G23890.1 (e_value=0.0) | Symbols: | LOCATED IN: mitochondrion, chloroplast thylakoid membrane, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8058789-8063005 FORWARD LENGTH=946;; (*ITAG) Solyc03g025530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7291651-7299172 transcript_region:SL2.40ch03:7291651..7299172- functional_description:"S-layer domain protein (AHRD V1 *-*- B2J947_NOSP7); contains Interpro domain(s) IPR001119 S-layer homology region "; NbS00002733g0025.1 protein AED:0.20 eAED:0.20 QI:176|0.83|0.71|1|0.66|0.71|7|348|259; (*TAIR) AT4G25600.1 (e_value=1e-44) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr4:13060712-13062359 FORWARD LENGTH=291;; (*ITAG) Solyc03g025500.2.1 (e_value=4e-136) genomic_reference:SL2.40ch03 gene_region:7273491-7277006 transcript_region:SL2.40ch03:7273491..7277006- go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00002733g0022.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0.33|0.25|4|0|507; (*SWP) sp|Q5XVA8|Y3905_ARATH (e_value=3e-39) Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1;; (*TAIR) AT3G49055.1 (e_value=2e-40) | Symbols: | unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins in 1994 species: Archae - 873; Bacteria - 6150; Metazoa - 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other Eukaryotes - 11107 (source: NCBI BLink). | chr3:18185166-18186968 REVERSE LENGTH=480;; (*ITAG) Solyc03g025460.2.1 (e_value=3e-174) genomic_reference:SL2.40ch03 gene_region:7254829-7258560 transcript_region:SL2.40ch03:7254829..7258560+ functional_description:"Myosin heavy chain-related-like (AHRD V1 **-- Q6YYY2_ORYSJ)"; NbS00002733g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0|0.66|1|1|3|0|108; (*SWP) sp|O80929|RL361_ARATH (e_value=1e-53) 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1;; (*TAIR) AT2G37600.2 (e_value=1e-54) | Symbols: | Ribosomal protein L36e family protein | chr2:15774410-15775203 REVERSE LENGTH=113;; (*ITAG) Solyc03g025520.2.1 (e_value=4e-70) genomic_reference:SL2.40ch03 gene_region:7288938-7290880 transcript_region:SL2.40ch03:7288938..7290880+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0003735,GO:0003723 NbS00002733g0028.1 protein AED:0.43 eAED:0.52 QI:0|0|0|0.75|0.33|0.5|4|0|132; (*ITAG) Solyc03g025480.2.1 (e_value=9e-15) genomic_reference:SL2.40ch03 gene_region:7264938-7268774 transcript_region:SL2.40ch03:7264938..7268774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037409g0009.1 protein AED:0.00 eAED:0.00 QI:172|1|1|1|1|1|2|347|271; (*SWP) sp|O07015|RSBQ_BACSU (e_value=2e-57) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=1e-169) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48303721-48305719 transcript_region:SL2.40ch02:48303721..48305719+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00037409g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.2|1|1|1|5|0|528; (*SWP) sp|Q9SNV9|NRAM3_ARATH (e_value=0.0) Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2;; (*TAIR) AT2G23150.1 (e_value=0.0) | Symbols: NRAMP3, ATNRAMP3 | natural resistance-associated macrophage protein 3 | chr2:9856422-9858565 REVERSE LENGTH=509;; (*ITAG) Solyc02g092800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48343155-48346971 transcript_region:SL2.40ch02:48343155..48346971- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00015863g0003.1 protein AED:0.24 eAED:0.25 QI:7|0.92|0.86|1|0.85|0.89|29|1345|990; (*TAIR) AT1G02890.2 (e_value=3e-164) | Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1218;; (*ITAG) Solyc03g110900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55671361-55690483 transcript_region:SL2.40ch03:55671361..55690483- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_DANRE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00015136g0012.1 protein AED:0.23 eAED:0.28 QI:399|0.77|0.6|0.9|0.33|0.6|10|0|482; (*SWP) sp|Q9IBD1|CELF3_DANRE (e_value=8e-43) CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2;; (*TAIR) AT4G03110.1 (e_value=2e-170) | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441;; (*ITAG) Solyc09g074360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61655003-61662278 transcript_region:SL2.40ch09:61655003..61662278- go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"RNA binding protein (AHRD V1 **-- B6UFA0_MAIZE); contains Interpro domain(s) IPR015903 Ribonucleoprotein, BRUNO-like "; GO:0003676,GO:0003723,GO:0000166 NbS00008886g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.9|0.90|1|0.9|0.81|11|490|470; (*TAIR) AT1G16650.1 (e_value=6e-148) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5687994-5691101 FORWARD LENGTH=521;; (*ITAG) Solyc07g066340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65032869-65039520 transcript_region:SL2.40ch07:65032869..65039520- functional_description:"UPF0431 protein C1orf66 homolog (AHRD V1 **-- CA066_RAT)"; NbS00006313g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0|0.75|0.33|0.25|4|0|676; (*TAIR) AT2G33360.1 (e_value=2e-81) | Symbols: | Protein of unknown function (DUF3527) | chr2:14140901-14142870 FORWARD LENGTH=603;; (*ITAG) Solyc09g090640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65437311-65439687 transcript_region:SL2.40ch09:65437311..65439687- functional_description:"Unknown Protein (AHRD V1)"; NbS00006313g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.71|0.62|1|0.71|0.62|8|0|818; (*SWP) sp|Q8W595|SUVR4_ARATH (e_value=6e-147) Histone-lysine N-methyltransferase SUVR4 OS=Arabidopsis thaliana GN=SUVR4 PE=2 SV=2;; (*TAIR) AT3G04380.1 (e_value=5e-148) | Symbols: SUVR4, SDG31 | SET-domain containing protein lysine methyltransferase family protein | chr3:1161602-1164539 FORWARD LENGTH=492;; (*ITAG) Solyc09g090630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65427645-65432748 transcript_region:SL2.40ch09:65427645..65432748- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00006313g0010.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|3|0|216; (*ITAG) Solyc09g090620.1.1 (e_value=9e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65425945-65426544 transcript_region:SL2.40ch09:65425945..65426544+ functional_description:"CC-NBS-LRR class disease resistance protein (AHRD V1 ***- C6FF62_SOYBN)"; NbS00031642g0005.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|0.5|0.33|3|0|460; (*SWP) sp|O23918|HCBT3_DIACA (e_value=2e-13) Anthranilate N-benzoyltransferase protein 3 OS=Dianthus caryophyllus GN=HCBT3 PE=1 SV=1;; (*TAIR) AT4G24510.1 (e_value=1e-90) | Symbols: CER2, VC2, VC-2 | HXXXD-type acyl-transferase family protein | chr4:12660929-12662537 FORWARD LENGTH=421;; (*ITAG) Solyc12g087980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61917409-61922288 transcript_region:SL2.40ch12:61917409..61922288- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase 2 (AHRD V1 **-- D8L7F0_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00031642g0004.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|0|0|3|0|139 NbS00031642g0102.1 protein AED:0.33 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|261 NbS00031642g0101.1 protein AED:0.53 eAED:0.68 QI:0|0|0|1|1|1|2|0|126 NbS00014915g0004.1 protein AED:0.22 eAED:0.22 QI:110|1|0.9|1|0.77|0.7|10|0|538; (*SWP) sp|P32068|TRPE_ARATH (e_value=2e-165) Anthranilate synthase component I-1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=2 SV=1;; (*TAIR) AT5G05730.1 (e_value=2e-166) | Symbols: ASA1, TRP5, AMT1, WEI2, JDL1 | anthranilate synthase alpha subunit 1 | chr5:1719740-1722811 REVERSE LENGTH=595;; (*ITAG) Solyc06g005980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:964946-972193 transcript_region:SL2.40ch06:964946..972193- go_terms:GO:0046820,GO:0004049 functional_description:"Anthranilate synthase component I-1 (AHRD V1 **** B4F8P4_MAIZE); contains Interpro domain(s) IPR019999 Anthranilate synthase component I, C-terminal "; GO:0046820,GO:0004049 NbS00037634g0003.1 protein AED:0.00 eAED:0.00 QI:235|1|1|1|0.66|0.75|4|122|66 NbS00014485g0010.1 protein AED:0.41 eAED:0.81 QI:0|0|0|1|1|1|2|0|65 NbS00014485g0009.1 protein AED:0.11 eAED:0.11 QI:312|0.83|0.85|1|1|1|7|361|491; (*TAIR) AT5G48830.1 (e_value=7e-132) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19800269-19802625 REVERSE LENGTH=511;; (*ITAG) Solyc09g061420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54682596-54695544 transcript_region:SL2.40ch09:54682596..54695544- functional_description:"Os02g0515000 protein (Fragment) (AHRD V1 *-*- Q0E0X2_ORYSJ)"; NbS00028919g0006.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|314; (*ITAG) Solyc01g105770.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:85579929-85581435 transcript_region:SL2.40ch01:85579929..85581435- functional_description:"Unknown Protein (AHRD V1)"; NbS00028919g0019.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|1|0.75|4|0|430; (*SWP) sp|Q5VTL8|PR38B_HUMAN (e_value=2e-42) Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1;; (*TAIR) AT5G37370.1 (e_value=7e-144) | Symbols: ATSRL1 | PRP38 family protein | chr5:14812845-14815988 REVERSE LENGTH=393;; (*ITAG) Solyc04g014560.2.1 (e_value=7e-169) genomic_reference:SL2.40ch04 gene_region:4825799-4832573 transcript_region:SL2.40ch04:4825799..4832573+ functional_description:"Pre-mRNA-splicing factor 38B (AHRD V1 *-*- C0HBS4_SALSA); contains Interpro domain(s) IPR005037 PRP38 "; NbS00028919g0007.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|246; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=2e-37) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=1e-38) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc04g014540.1.1 (e_value=3e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4814713-4815411 transcript_region:SL2.40ch04:4814713..4815411+ go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00028919g0018.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.6|0.8|0.75|0.4|5|0|110; (*TAIR) AT5G37478.1 (e_value=3e-16) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:14881560-14883799 FORWARD LENGTH=178;; (*ITAG) Solyc04g014550.2.1 (e_value=2e-47) genomic_reference:SL2.40ch04 gene_region:4821261-4824079 transcript_region:SL2.40ch04:4821261..4824079+ functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *--- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00028919g0016.1 protein AED:0.06 eAED:0.06 QI:144|0|1|1|1|1|2|456|78 NbS00028919g0002.1 protein AED:0.18 eAED:0.18 QI:342|1|1|1|0.66|0.5|10|446|467; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-138) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc04g014570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4832869-4838038 transcript_region:SL2.40ch04:4832869..4838038- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00050624g0005.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|0.8|0.83|6|250|577; (*TAIR) AT2G24100.1 (e_value=2e-134) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:10244921-10246715 FORWARD LENGTH=466;; (*ITAG) Solyc06g068540.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38864343-38869183 transcript_region:SL2.40ch06:38864343..38869183- functional_description:"Transcription regulatory protein SNF5 (AHRD V1 *-*- D3B6R9_POLPA)"; NbS00028257g0003.1 protein AED:0.00 eAED:0.00 QI:325|1|1|1|1|1|2|166|70; (*SWP) sp|Q9AT35|RL23A_DAUCA (e_value=3e-28) 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.3 (e_value=4e-29) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=148;; (*ITAG) Solyc09g005720.2.1 (e_value=3e-29) genomic_reference:SL2.40ch09 gene_region:498274-500367 transcript_region:SL2.40ch09:498274..500367- go_terms:GO:0003735,GO:0019843 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR001014 Ribosomal protein L23/L25, conserved site "; GO:0003735,GO:0019843 NbS00011234g0004.1 protein AED:0.19 eAED:0.19 QI:277|0.88|0.8|1|1|1|10|0|582; (*SWP) sp|Q43793|G6PDC_TOBAC (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G13110.1 (e_value=0.0) | Symbols: G6PD2 | glucose-6-phosphate dehydrogenase 2 | chr5:4158952-4161640 FORWARD LENGTH=596;; (*ITAG) Solyc05g015950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13085212-13089624 transcript_region:SL2.40ch05:13085212..13089624- go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** Q8H9C8_SOLTU); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00011234g0102.1 protein AED:0.12 eAED:0.15 QI:0|0.5|0|1|1|1|3|0|276 NbS00011234g0109.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|4|0|345 NbS00060892g0004.1 protein AED:0.23 eAED:0.23 QI:120|0.6|0.5|1|0.6|0.66|6|0|262; (*SWP) sp|Q9SA23|SYP51_ARATH (e_value=2e-103) Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1;; (*TAIR) AT1G16240.2 (e_value=1e-104) | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555183-5556340 REVERSE LENGTH=232;; (*ITAG) Solyc07g065030.2.1 (e_value=1e-125) genomic_reference:SL2.40ch07 gene_region:64189984-64193334 transcript_region:SL2.40ch07:64189984..64193334+ go_terms:GO:0005484 functional_description:"Syntaxin-8 (AHRD V1 ***- C1C0H0_9MAXI); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00013317g0017.1 protein AED:0.00 eAED:0.00 QI:175|1|1|1|1|1|2|452|140; (*SWP) sp|O80690|BGL46_ARATH (e_value=4e-38) Beta-glucosidase 46 OS=Arabidopsis thaliana GN=BGLU46 PE=1 SV=2;; (*TAIR) AT1G61820.3 (e_value=3e-40) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22836707-22838444 FORWARD LENGTH=377;; (*ITAG) Solyc02g080290.2.1 (e_value=5e-77) genomic_reference:SL2.40ch02 gene_region:39132007-39135756 transcript_region:SL2.40ch02:39132007..39135756+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00013317g0022.1 protein AED:0.10 eAED:0.10 QI:174|1|1|1|0.25|0.2|5|1277|197; (*SWP) sp|P52420|PUR2_ARATH (e_value=6e-57) Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2;; (*TAIR) AT1G09830.1 (e_value=5e-58) | Symbols: | Glycinamide ribonucleotide (GAR) synthetase | chr1:3192783-3194936 REVERSE LENGTH=532;; (*ITAG) Solyc01g103440.2.1 (e_value=4e-95) genomic_reference:SL2.40ch01 gene_region:83817098-83820931 transcript_region:SL2.40ch01:83817098..83820931+ go_terms:GO:0009113,GO:0005524 functional_description:"Phosphoribosylamine--glycine ligase (AHRD V1 ***- D7KJV0_ARALY); contains Interpro domain(s) IPR000115 Phosphoribosylglycinamide synthetase "; GO:0009113,GO:0005524 NbS00013317g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.62|0.44|1|1|1|9|0|413; (*SWP) sp|O80690|BGL46_ARATH (e_value=6e-154) Beta-glucosidase 46 OS=Arabidopsis thaliana GN=BGLU46 PE=1 SV=2;; (*TAIR) AT1G61820.1 (e_value=4e-155) | Symbols: BGLU46 | beta glucosidase 46 | chr1:22835452-22838444 FORWARD LENGTH=516;; (*ITAG) Solyc02g080290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39132007-39135756 transcript_region:SL2.40ch02:39132007..39135756+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00013317g0005.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|168; (*ITAG) Solyc06g033980.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:20163363-20164580 transcript_region:SL2.40ch06:20163363..20164580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HUA4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00013317g0029.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.45|1|0.3|0.54|11|0|462; (*SWP) sp|Q9SVS0|PUS6_ARATH (e_value=0.0) RNA pseudourine synthase 6, chloroplastic OS=Arabidopsis thaliana GN=At4g21770 PE=2 SV=1;; (*TAIR) AT4G21770.1 (e_value=0.0) | Symbols: | Pseudouridine synthase family protein | chr4:11564028-11566345 REVERSE LENGTH=472;; (*ITAG) Solyc02g080320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39146748-39150006 transcript_region:SL2.40ch02:39146748..39150006- go_terms:GO:0009982 functional_description:"Pseudouridine synthase family protein (AHRD V1 **** D7MEP4_ARALY); contains Interpro domain(s) IPR006145 Pseudouridine synthase, RsuA and RluB/C/D/E/F "; GO:0009982 NbS00013317g0007.1 protein AED:0.35 eAED:0.35 QI:0|1|0.5|1|0|0|2|674|209; (*SWP) sp|Q9S9T7|VP282_ARATH (e_value=7e-119) Vacuolar protein sorting-associated protein 28 homolog 2 OS=Arabidopsis thaliana GN=VPS28-2 PE=1 SV=2;; (*TAIR) AT4G05000.2 (e_value=5e-120) | Symbols: VPS28-1 | Vacuolar protein sorting-associated protein VPS28 family protein | chr4:2563953-2564585 FORWARD LENGTH=210;; (*ITAG) Solyc02g080270.2.1 (e_value=4e-127) genomic_reference:SL2.40ch02 gene_region:39121853-39125587 transcript_region:SL2.40ch02:39121853..39125587- go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein 28 family protein (AHRD V1 ***- D7MES4_ARALY); contains Interpro domain(s) IPR007143 Vacuolar protein sorting-associated, VPS28 "; GO:0005515 NbS00013317g0027.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|3|0|439; (*SWP) sp|Q9LZ31|C77A4_ARATH (e_value=1e-116) Cytochrome P450 77A4 OS=Arabidopsis thaliana GN=CYP77A4 PE=2 SV=1;; (*TAIR) AT1G11600.1 (e_value=0.0) | Symbols: CYP77B1 | cytochrome P450, family 77, subfamily B, polypeptide 1 | chr1:3902090-3903622 FORWARD LENGTH=510;; (*ITAG) Solyc02g080330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39155928-39158157 transcript_region:SL2.40ch02:39155928..39158157+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00013317g0025.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|0|0|2|0|109; (*ITAG) Solyc02g080310.2.1 (e_value=3e-15) genomic_reference:SL2.40ch02 gene_region:39140632-39145281 transcript_region:SL2.40ch02:39140632..39145281+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00054420g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|587; (*SWP) sp|Q86YJ7|AN13B_HUMAN (e_value=3e-32) Ankyrin repeat domain-containing protein 13B OS=Homo sapiens GN=ANKRD13B PE=2 SV=4;; (*TAIR) AT1G62050.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:22936323-22938874 REVERSE LENGTH=624;; (*ITAG) Solyc02g080610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39371268-39373522 transcript_region:SL2.40ch02:39371268..39373522- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 **** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbS00048305g0001.1 protein AED:0.09 eAED:0.09 QI:52|1|1|1|1|1|4|247|171; (*SWP) sp|Q9XH44|CET1_TOBAC (e_value=4e-102) CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1;; (*TAIR) AT5G62040.1 (e_value=6e-87) | Symbols: | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:24922810-24923709 FORWARD LENGTH=177;; (*ITAG) Solyc03g026050.2.1 (e_value=7e-111) genomic_reference:SL2.40ch03 gene_region:7835665-7836616 transcript_region:SL2.40ch03:7835665..7836616+ go_terms:GO:0008429 functional_description:"Terminal flower 1 (Fragment) (AHRD V1 **-- B3VT13_9ROSA); contains Interpro domain(s) IPR008914 Phosphatidylethanolamine-binding protein PEBP "; GO:0008429 NbS00048305g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.77|0.7|1|1|1|10|0|491; (*SWP) sp|Q4FE45|XB33_ARATH (e_value=0.0) E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1;; (*TAIR) AT5G07270.1 (e_value=0.0) | Symbols: XBAT33 | XB3 ortholog 3 in Arabidopsis thaliana | chr5:2280821-2283384 FORWARD LENGTH=513;; (*ITAG) Solyc03g026060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7839094-7845515 transcript_region:SL2.40ch03:7839094..7845515- go_terms:GO:0008381 functional_description:"Ankyrin repeat-rich protein (AHRD V1 **-- C7EC57_NICBE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbC25802181g0002.1 protein AED:0.04 eAED:0.05 QI:30|0|0.5|1|1|1|2|0|158 NbS00018592g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.87|0.88|1|0.87|1|9|344|786; (*SWP) sp|O49289|RH29_ARATH (e_value=0.0) Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1;; (*TAIR) AT1G77030.1 (e_value=0.0) | Symbols: | hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases | chr1:28947887-28951526 REVERSE LENGTH=845;; (*ITAG) Solyc10g009070.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3093051-3105113 transcript_region:SL2.40ch10:3093051..3105113- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q8JGR2_DANRE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00029168g0001.1 protein AED:0.24 eAED:0.38 QI:81|1|0.5|1|0|0|2|0|668; (*ITAG) Solyc02g021100.2.1 (e_value=5e-69) genomic_reference:SL2.40ch02 gene_region:12276103-12278400 transcript_region:SL2.40ch02:12276103..12278400- go_terms:GO:0006284,GO:0006281 functional_description:"Methyl-CpG binding domain protein 4 (AHRD V1 *-*- Q3ZBC7_BOVIN); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00015920g0004.1 protein AED:0.21 eAED:0.23 QI:0|0.41|0.15|1|0.58|0.61|13|0|1372; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=0.0) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=0.0) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g082750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00036843g0004.1 protein AED:0.04 eAED:0.04 QI:8|0.5|0.66|1|0.5|0.33|3|0|387; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT3G08580.2 (e_value=0.0) | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605706-2607030 REVERSE LENGTH=381;; (*ITAG) Solyc01g087070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73772134-73774143 transcript_region:SL2.40ch01:73772134..73774143- go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00029362g0001.1 protein AED:0.13 eAED:0.13 QI:506|0.88|0.8|1|1|1|10|47|757; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc03g019760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6688319-6692363 transcript_region:SL2.40ch03:6688319..6692363- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00029362g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|67; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=5e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=1e-27) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=7e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00040137g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.4|1|1|0.8|5|0|212; (*SWP) sp|Q9ZRT5|GSTT1_ARATH (e_value=2e-78) Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1;; (*TAIR) AT5G41210.1 (e_value=1e-79) | Symbols: ATGSTT1, GST10, GSTT1 | glutathione S-transferase THETA 1 | chr5:16492550-16493884 REVERSE LENGTH=245;; (*ITAG) Solyc08g080900.2.1 (e_value=6e-127) genomic_reference:SL2.40ch08 gene_region:61232712-61236723 transcript_region:SL2.40ch08:61232712..61236723- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** B2MVQ2_PANGI); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364 NbS00040137g0012.1 protein AED:0.33 eAED:0.33 QI:39|0.5|0.33|1|0|0|3|0|82 NbS00040137g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|209; (*SWP) sp|Q9SWE5|HAL3A_ARATH (e_value=2e-118) Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1;; (*TAIR) AT3G18030.1 (e_value=1e-119) | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like protein A | chr3:6167883-6168629 REVERSE LENGTH=209;; (*ITAG) Solyc08g080920.2.1 (e_value=5e-134) genomic_reference:SL2.40ch08 gene_region:61245090-61246265 transcript_region:SL2.40ch08:61245090..61246265+ go_terms:GO:0004633 functional_description:"Phosphopantothenoylcysteine decarboxylase (AHRD V1 **-* B4FCR1_MAIZE); contains Interpro domain(s) IPR003382 Flavoprotein "; GO:0004633 NbS00040137g0004.1 protein AED:0.10 eAED:0.10 QI:51|0.33|0|0.75|1|1|4|0|273; (*SWP) sp|Q9SH30|HMA5_ARATH (e_value=5e-82) Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2;; (*TAIR) AT1G63440.1 (e_value=4e-83) | Symbols: HMA5 | heavy metal atpase 5 | chr1:23527655-23531109 FORWARD LENGTH=995;; (*ITAG) Solyc08g080890.2.1 (e_value=1e-107) genomic_reference:SL2.40ch08 gene_region:61228295-61231752 transcript_region:SL2.40ch08:61228295..61231752+ go_terms:GO:0004008 functional_description:"Copper-exporting ATPase (AHRD V1 **** C0X752_ENTFA); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00022474g0013.1 protein AED:0.27 eAED:0.27 QI:481|1|1|1|0.91|0.84|13|622|493; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=2e-26) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=2e-180) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc11g040150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28610740-28616082 transcript_region:SL2.40ch11:28610740..28616082- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00022474g0016.1 protein AED:0.01 eAED:0.01 QI:191|1|1|1|0|1|2|438|257; (*SWP) sp|Q55909|Y305_SYNY3 (e_value=3e-13) TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1;; (*TAIR) AT1G44960.1 (e_value=8e-93) | Symbols: | SNARE associated Golgi protein family | chr1:16999576-17001447 FORWARD LENGTH=261;; (*ITAG) Solyc11g040130.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28592236-28598845 transcript_region:SL2.40ch11:28592236..28598845+ functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B9XJU7_9BACT); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00022474g0012.1 protein AED:0.15 eAED:0.15 QI:50|0.93|0.75|1|0.93|0.93|16|0|1032; (*SWP) sp|P55861|MCM2_XENLA (e_value=0.0) DNA replication licensing factor mcm2 OS=Xenopus laevis GN=mcm2 PE=1 SV=2;; (*TAIR) AT1G44900.1 (e_value=0.0) | Symbols: MCM2, ATMCM2 | minichromosome maintenance (MCM2/3/5) family protein | chr1:16970291-16974457 FORWARD LENGTH=936;; (*ITAG) Solyc11g040120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28583677-28588706 transcript_region:SL2.40ch11:28583677..28588706+ go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q8JGR5_DANRE); contains Interpro domain(s) IPR008045 MCM protein 2 "; GO:0005515 NbS00022474g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.5|2|0|93; (*SWP) sp|Q8LNZ5|XTHB_PHAAN (e_value=2e-19) Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1;; (*TAIR) AT5G13870.1 (e_value=5e-15) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc11g040140.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28603625-28606490 transcript_region:SL2.40ch11:28603625..28606490+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 ***- C0IRG4_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00022474g0014.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|4|0|230; (*SWP) sp|Q6YDN9|XTH_BRAOB (e_value=8e-91) Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1;; (*TAIR) AT5G13870.1 (e_value=3e-91) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc11g040140.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28603625-28606490 transcript_region:SL2.40ch11:28603625..28606490+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 ***- C0IRG4_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00038303g0004.1 protein AED:0.27 eAED:0.31 QI:530|1|0.8|1|0.5|0.8|5|0|390; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=4e-22) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT1G70650.1 (e_value=3e-110) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr1:26638158-26640126 FORWARD LENGTH=466;; (*ITAG) Solyc08g014510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4545315-4548052 transcript_region:SL2.40ch08:4545315..4548052- go_terms:GO:0005488 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 **** D7KYC9_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00043655g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.4|1|0.25|0.2|5|0|289; (*TAIR) AT2G28230.1 (e_value=2e-121) | Symbols: | TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219;; (*ITAG) Solyc12g009090.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2414294-2418251 transcript_region:SL2.40ch12:2414294..2418251+ go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013921 Mediator complex, subunit Med20 "; GO:0016592 NbS00039008g0007.1 protein AED:0.21 eAED:0.21 QI:216|0.90|0.91|1|0.90|0.83|12|335|559; (*SWP) sp|Q9FYL3|ALB31_ARATH (e_value=2e-167) ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3;; (*TAIR) AT1G24490.1 (e_value=1e-168) | Symbols: ALB4, ARTEMIS | OxaA/YidC-like membrane insertion protein | chr1:8682364-8684966 FORWARD LENGTH=499;; (*ITAG) Solyc05g014050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7616440-7621671 transcript_region:SL2.40ch05:7616440..7621671- go_terms:GO:0016021 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- B9L0L4_THERP); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0016021 NbS00012999g0004.1 protein AED:0.13 eAED:0.13 QI:157|1|0.8|1|1|1|5|0|372; (*SWP) sp|Q3SWZ6|SBDS_BOVIN (e_value=2e-85) Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1;; (*TAIR) AT1G43860.1 (e_value=0.0) | Symbols: | sequence-specific DNA binding transcription factors | chr1:16622244-16624385 REVERSE LENGTH=370;; (*ITAG) Solyc04g064570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54864818-54870536 transcript_region:SL2.40ch04:54864818..54870536+ go_terms:GO:0008017,GO:0042802 functional_description:"Ribosome maturation protein SBDS (AHRD V1 **-- B5XEK1_SALSA); contains Interpro domain(s) IPR002140 Ribosome maturation protein SBDS "; GO:0008017,GO:0042802 NbS00012999g0018.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|660; (*SWP) sp|Q9SDQ3|SCL1_ARATH (e_value=1e-167) Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1;; (*TAIR) AT1G21450.1 (e_value=1e-168) | Symbols: SCL1 | SCARECROW-like 1 | chr1:7509721-7511502 FORWARD LENGTH=593;; (*ITAG) Solyc04g064550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:54845460-54847151 transcript_region:SL2.40ch04:54845460..54847151+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9H7M7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00012999g0001.1 protein AED:0.61 eAED:0.64 QI:0|0|0|0.33|1|1|3|0|146 NbS00012999g0026.1 protein AED:0.28 eAED:0.28 QI:616|0.42|0.5|1|0.57|0.5|8|448|200; (*SWP) sp|O22040|ANP1_ARATH (e_value=2e-39) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT1G53570.1 (e_value=6e-58) | Symbols: MAP3KA, MAPKKK3 | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=609;; (*ITAG) Solyc11g006000.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:809687-815717 transcript_region:SL2.40ch11:809687..815717+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0006468 NbS00012999g0027.1 protein AED:0.28 eAED:0.31 QI:0|0.55|0.52|1|0.85|0.80|21|0|1624; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=1e-147) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT1G43850.2 (e_value=8e-149) | Symbols: SEU | SEUSS transcriptional co-regulator | chr1:16617872-16621596 FORWARD LENGTH=877;; (*ITAG) Solyc06g059760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34032864-34046384 transcript_region:SL2.40ch06:34032864..34046384+ go_terms:GO:0060090,GO:0003677 functional_description:"Transcriptional corepressor SEUSS (AHRD V1 **-- SEUSS_ARATH)"; GO:0060090,GO:0003677 NbS00012999g0030.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|83; (*SWP) sp|P05495|ATPAM_NICPL (e_value=3e-36) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=5e-37) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00001520g0011.1 protein AED:0.17 eAED:0.17 QI:231|1|1|1|0.25|0.2|5|261|186; (*TAIR) AT5G59460.1 (e_value=2e-30) | Symbols: | scarecrow-like transcription factor 11 (SCL11) | chr5:23976968-23978291 REVERSE LENGTH=172;; (*ITAG) Solyc06g005600.2.1 (e_value=1e-77) genomic_reference:SL2.40ch06 gene_region:641706-645757 transcript_region:SL2.40ch06:641706..645757- functional_description:"Unknown Protein (AHRD V1)"; NbS00001520g0010.1 protein AED:0.36 eAED:0.37 QI:0|1|0.75|1|1|1|4|0|224; (*SWP) sp|Q3MH14|FABZ_ANAVT (e_value=7e-51) (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2;; (*TAIR) AT5G10160.1 (e_value=3e-114) | Symbols: | Thioesterase superfamily protein | chr5:3185819-3187159 FORWARD LENGTH=219;; (*ITAG) Solyc01g105060.2.1 (e_value=1e-138) genomic_reference:SL2.40ch01 gene_region:85094784-85097712 transcript_region:SL2.40ch01:85094784..85097712- go_terms:GO:0005737 functional_description:"(3R)-hydroxymyristoyl- (AHRD V1 ***- Q9LX13_ARATH); contains Interpro domain(s) IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ "; GO:0005737 NbS00001520g0001.1 protein AED:0.35 eAED:0.50 QI:0|0|0|1|1|1|3|0|122; (*SWP) sp|Q6R0E3|TRP5_ARATH (e_value=2e-17) Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2;; (*TAIR) AT1G07540.1 (e_value=1e-18) | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048 REVERSE LENGTH=630;; (*ITAG) Solyc06g005590.2.1 (e_value=4e-33) genomic_reference:SL2.40ch06 gene_region:634483-638227 transcript_region:SL2.40ch06:634483..638227+ go_terms:GO:0042162,GO:0042803 functional_description:"Telomere repeat-binding protein 5 (AHRD V1 **** TRP5_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0042162,GO:0042803 NbS00006992g0002.1 protein AED:0.00 eAED:0.00 QI:133|1|0.66|1|0|0|3|211|583; (*SWP) sp|Q69VG1|CIGR1_ORYSJ (e_value=0.0) Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=3e-168) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g063940.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63488513-63490264 transcript_region:SL2.40ch07:63488513..63490264- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00006992g0008.1 protein AED:0.10 eAED:0.15 QI:0|0.71|0.62|0.87|1|1|8|0|485; (*SWP) sp|Q9LFV3|Y5157_ARATH (e_value=3e-110) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1;; (*TAIR) AT5G54590.2 (e_value=0.0) | Symbols: CRLK1 | Protein kinase superfamily protein | chr5:22180480-22182698 FORWARD LENGTH=440;; (*ITAG) Solyc07g063950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63510696-63514925 transcript_region:SL2.40ch07:63510696..63514925+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM68_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00006992g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0.25|1|0.33|0.75|4|0|236; (*SWP) sp|Q02764|RK24_TOBAC (e_value=4e-101) 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1;; (*TAIR) AT5G54600.1 (e_value=4e-79) | Symbols: | Translation protein SH3-like family protein | chr5:22183046-22184403 FORWARD LENGTH=198;; (*ITAG) Solyc07g063960.2.1 (e_value=3e-99) genomic_reference:SL2.40ch07 gene_region:63515688-63518536 transcript_region:SL2.40ch07:63515688..63518536+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- B4FTJ3_MAIZE); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005840 NbS00038682g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.4|1|1|5|0|132; (*SWP) sp|P05499|ATP6_TOBAC (e_value=7e-20) ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1;; (*ITAG) ATMG01170.1 (e_value=5e-16) | Symbols: ATP6-2 | ATPase, F0 complex, subunit A protein | chrM:296820-297869 REVERSE LENGTH=349;; (*ITAG) Solyc00g171810.2.1 (e_value=2e-18) genomic_reference:SL2.40ch00 gene_region:18050017-18051583 transcript_region:SL2.40ch00:18050017..18051583- go_terms:GO:0045263 functional_description:"ATP synthase subunit a (AHRD V1 ***- Q45KQ5_CAPAN); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0045263 NbS00012330g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|647; (*SWP) sp|Q9M891|PP208_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1;; (*TAIR) AT3G02490.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:513607-515604 FORWARD LENGTH=665;; (*ITAG) Solyc03g112190.2.1 (e_value=1e-111) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00032110g0004.1 protein AED:0.05 eAED:0.05 QI:342|1|1|1|1|1|6|256|636; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc01g091690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77031346-77036001 transcript_region:SL2.40ch01:77031346..77036001- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00004698g0016.1 protein AED:0.25 eAED:0.25 QI:216|1|1|1|0.5|0.6|5|309|287; (*TAIR) AT3G51580.1 (e_value=4e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). | chr3:19131167-19133016 REVERSE LENGTH=390;; (*ITAG) Solyc05g052210.2.1 (e_value=3e-105) genomic_reference:SL2.40ch05 gene_region:61637100-61640159 transcript_region:SL2.40ch05:61637100..61640159- functional_description:"Unknown Protein (AHRD V1)"; NbS00004698g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|198; (*TAIR) AT5G05250.1 (e_value=1e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1557116-1557835 REVERSE LENGTH=239;; (*ITAG) Solyc06g049020.1.1 (e_value=3e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:28759229-28759888 transcript_region:SL2.40ch06:28759229..28759888- functional_description:"Sorghum bicolor protein targeted either to mitochondria or chloroplast proteins T50848 (AHRD V1 ***- C7IVU8_9POAL)"; NbS00004698g0014.1 protein AED:0.41 eAED:0.65 QI:0|0|0|1|1|1|2|0|74 NbS00004698g0019.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|0|0.25|4|257|193; (*TAIR) AT5G05270.2 (e_value=3e-61) | Symbols: | Chalcone-flavanone isomerase family protein | chr5:1563543-1564827 FORWARD LENGTH=209;; (*ITAG) Solyc05g052240.2.1 (e_value=7e-78) genomic_reference:SL2.40ch05 gene_region:61658292-61661234 transcript_region:SL2.40ch05:61658292..61661234+ go_terms:GO:0042398,GO:0009813 functional_description:"Chalcone--flavonone isomerase (AHRD V1 ***- B4G1R6_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398,GO:0009813 NbS00004698g0017.1 protein AED:0.10 eAED:0.10 QI:43|1|1|1|1|1|7|409|282; (*SWP) sp|Q8P5Z8|Y3184_XANCP (e_value=1e-51) Macro domain-containing protein XCC3184 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC3184 PE=4 SV=1;; (*TAIR) AT2G40600.1 (e_value=2e-106) | Symbols: | appr-1-p processing enzyme family protein | chr2:16947012-16948537 REVERSE LENGTH=257;; (*ITAG) Solyc05g052260.2.1 (e_value=3e-124) genomic_reference:SL2.40ch05 gene_region:61668009-61674331 transcript_region:SL2.40ch05:61668009..61674331+ functional_description:"Appr-1-p processing domain protein (AHRD V1 **-- B8FDL2_DESAA); contains Interpro domain(s) IPR002589 Appr-1-p processing "; NbS00004698g0024.1 protein AED:0.14 eAED:0.22 QI:53|0.5|0|1|0|0|3|0|178; (*SWP) sp|Q9C554|EXPA1_ARATH (e_value=1e-89) Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1;; (*TAIR) AT1G69530.4 (e_value=9e-91) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143200 FORWARD LENGTH=274;; (*ITAG) Solyc05g052250.2.1 (e_value=7e-94) genomic_reference:SL2.40ch05 gene_region:61664225-61667017 transcript_region:SL2.40ch05:61664225..61667017+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin 2 (AHRD V1 ***- C0LU46_CITSI); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00004698g0003.1 protein AED:0.21 eAED:0.24 QI:203|0.5|0.66|0.88|0.75|0.66|9|316|454; (*SWP) sp|Q6DBN5|PUB62_ARATH (e_value=8e-70) U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1;; (*TAIR) AT5G05230.1 (e_value=6e-71) | Symbols: | RING/U-box superfamily protein | chr5:1551593-1553543 FORWARD LENGTH=363;; (*ITAG) Solyc05g052220.2.1 (e_value=2e-174) genomic_reference:SL2.40ch05 gene_region:61645289-61653781 transcript_region:SL2.40ch05:61645289..61653781+ go_terms:GO:0000151 functional_description:"U-box domain-containing protein 62 (AHRD V1 ***- PUB62_ARATH); contains Interpro domain(s) IPR003613 U box domain "; GO:0000151 NbS00004698g0021.1 protein AED:0.23 eAED:0.24 QI:0|0.82|0.66|0.94|0.76|0.83|18|249|706; (*SWP) sp|Q28FH2|NTKL_XENTR (e_value=7e-94) N-terminal kinase-like protein OS=Xenopus tropicalis GN=scyl1 PE=2 SV=1;; (*TAIR) AT2G40730.1 (e_value=0.0) | Symbols: | Protein kinase family protein with ARM repeat domain | chr2:16990083-16996072 REVERSE LENGTH=798;; (*ITAG) Solyc05g052200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61618463-61634698 transcript_region:SL2.40ch05:61618463..61634698+ go_terms:GO:0005515 functional_description:"Protein kinase (AHRD V1 ***- A8HT40_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00005956g0001.1 protein AED:0.08 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|168; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=9e-51) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G31170.4 (e_value=3e-104) | Symbols: | Protein kinase superfamily protein | chr4:15153396-15154846 REVERSE LENGTH=307;; (*ITAG) Solyc07g042680.2.1 (e_value=1e-118) genomic_reference:SL2.40ch07 gene_region:53543511-53549179 transcript_region:SL2.40ch07:53543511..53549179+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 **** D7MB90_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004709 NbS00005956g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|63 NbS00049478g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.33|1|0.33|3|0|196; (*TAIR) AT3G58720.2 (e_value=1e-28) | Symbols: | RING/U-box superfamily protein | chr3:21716920-21717908 REVERSE LENGTH=266;; (*ITAG) Solyc07g055330.2.1 (e_value=4e-74) genomic_reference:SL2.40ch07 gene_region:60722726-60724090 transcript_region:SL2.40ch07:60722726..60724090- go_terms:GO:0008270 functional_description:"RING finger protein 24 (AHRD V1 *-*- RNF24_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbC25836132g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|202; (*SWP) sp|O43395|PRPF3_HUMAN (e_value=4e-33) U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2;; (*TAIR) AT1G28060.1 (e_value=4e-83) | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786;; (*ITAG) Solyc06g036580.2.1 (e_value=1e-110) genomic_reference:SL2.40ch06 gene_region:23374815-23378066 transcript_region:SL2.40ch06:23374815..23378066- go_terms:GO:0005515 functional_description:"U4/U6 small nuclear ribonucleoprotein Prp3 (AHRD V1 ***- C1N1Y8_MICPS); contains Interpro domain(s) IPR013881 Pre-mRNA-splicing factor 3 "; GO:0005515 NbS00010200g0024.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|0.75|0|0|4|0|132; (*ITAG) Solyc08g061800.2.1 (e_value=6e-59) genomic_reference:SL2.40ch08 gene_region:46740890-46745658 transcript_region:SL2.40ch08:46740890..46745658+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010200g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|127; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-12) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc04g025620.1.1 (e_value=7e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:21835694-21836323 transcript_region:SL2.40ch04:21835694..21836323+ functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY6_MEDTR)"; NbS00010200g0001.1 protein AED:0.35 eAED:0.45 QI:56|-1|0|1|-1|1|1|0|111; (*ITAG) Solyc08g061640.1.1 (e_value=5e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:46483086-46483613 transcript_region:SL2.40ch08:46483086..46483613+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010200g0021.1 protein AED:0.00 eAED:0.00 QI:98|1|1|1|0|0.5|2|283|222; (*TAIR) AT1G02180.1 (e_value=7e-41) | Symbols: | ferredoxin-related | chr1:413619-414505 REVERSE LENGTH=226;; (*ITAG) Solyc07g063740.2.1 (e_value=1e-114) genomic_reference:SL2.40ch07 gene_region:63336974-63342936 transcript_region:SL2.40ch07:63336974..63342936+ functional_description:"Ferredoxin-like (AHRD V1 ***- Q6EP30_ORYSJ)"; NbS00010200g0020.1 protein AED:0.18 eAED:0.19 QI:0|0.8|0.5|1|1|1|6|0|837; (*SWP) sp|P34284|YKK7_CAEEL (e_value=9e-14) Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3;; (*TAIR) AT2G06040.1 (e_value=3e-138) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762;; (*ITAG) Solyc08g061650.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46484175-46497071 transcript_region:SL2.40ch08:46484175..46497071- functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00010200g0027.1 protein AED:0.24 eAED:0.24 QI:389|0.72|0.68|0.94|0.61|0.57|19|0|924; (*SWP) sp|Q9SMY8|FBL15_ARATH (e_value=0.0) F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2;; (*TAIR) AT4G33210.1 (e_value=0.0) | Symbols: SLOMO | F-box family protein | chr4:16015971-16020697 REVERSE LENGTH=990;; (*ITAG) Solyc08g061820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46762981-46772528 transcript_region:SL2.40ch08:46762981..46772528- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00010200g0022.1 protein AED:0.40 eAED:0.67 QI:84|0|0.5|1|0|0|2|48|37 NbS00024721g0014.1 protein AED:0.52 eAED:0.54 QI:0|0.4|0.33|0.83|0.8|1|6|0|153; (*SWP) sp|Q42563|APT2_ARATH (e_value=3e-72) Adenine phosphoribosyltransferase 2 OS=Arabidopsis thaliana GN=APT2 PE=2 SV=1;; (*TAIR) AT5G11160.1 (e_value=2e-78) | Symbols: APT5 | adenine phosphoribosyltransferase 5 | chr5:3550774-3551986 FORWARD LENGTH=191;; (*ITAG) Solyc04g077970.2.1 (e_value=6e-69) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00024721g0009.1 protein AED:0.09 eAED:0.09 QI:61|1|0.88|1|0.62|0.55|9|1065|319; (*TAIR) AT2G25350.1 (e_value=2e-63) | Symbols: | Phox (PX) domain-containing protein | chr2:10797599-10800756 FORWARD LENGTH=643;; (*ITAG) Solyc08g042130.2.1 (e_value=1e-134) genomic_reference:SL2.40ch08 gene_region:29154836-29172044 transcript_region:SL2.40ch08:29154836..29172044- go_terms:GO:0035091 functional_description:"Phox domain-containing protein (AHRD V1 *-*- D7L4Y9_ARALY); contains Interpro domain(s) IPR001683 Phox-like "; GO:0035091 NbS00024721g0015.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|4|0|584; (*SWP) sp|A8MQA3|PP330_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2;; (*TAIR) AT4G21065.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595;; (*ITAG) Solyc08g023640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:17717249-17719006 transcript_region:SL2.40ch08:17717249..17719006+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00024721g0016.1 protein AED:0.74 eAED:0.86 QI:0|0|0|0.66|0|0|3|0|81 NbS00024781g0001.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|181; (*TAIR) AT1G32120.1 (e_value=2e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc07g064400.1.1 (e_value=6e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63801554-63803617 transcript_region:SL2.40ch07:63801554..63803617- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *-*- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00024781g0002.1 protein AED:0.34 eAED:0.37 QI:0|0|0|1|1|1|2|0|175; (*TAIR) AT1G50820.1 (e_value=3e-13) | Symbols: | Aminotransferase-like, plant mobile domain family protein | chr1:18833275-18834861 REVERSE LENGTH=528;; (*ITAG) Solyc07g064400.1.1 (e_value=1e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63801554-63803617 transcript_region:SL2.40ch07:63801554..63803617- functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *-*- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00015954g0001.1 protein AED:0.15 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|134 NbS00038621g0006.1 protein AED:0.16 eAED:0.16 QI:353|1|1|1|0.77|0.9|10|1115|667; (*SWP) sp|P85107|TGS1_RAT (e_value=2e-70) Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1;; (*TAIR) AT1G45231.2 (e_value=2e-120) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:17148019-17151194 REVERSE LENGTH=538;; (*ITAG) Solyc12g088810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62476986-62483376 transcript_region:SL2.40ch12:62476986..62483376- go_terms:GO:0009452,GO:0005515 functional_description:"Trimethylguanosine synthase (AHRD V1 *--- D0N6V7_PHYIN); contains Interpro domain(s) IPR019012 RNA cap guanine-N2 methyltransferase "; GO:0009452,GO:0005515 NbS00038621g0007.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|52|290; (*TAIR) AT5G42930.1 (e_value=2e-115) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467;; (*ITAG) Solyc12g088800.1.1 (e_value=5e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62471287-62476348 transcript_region:SL2.40ch12:62471287..62476348+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00020243g0003.1 protein AED:0.29 eAED:0.30 QI:0|1|0.8|1|0.77|0.8|10|0|589; (*TAIR) AT2G30880.1 (e_value=0.0) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr2:13142926-13145718 REVERSE LENGTH=504;; (*ITAG) Solyc05g021100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:26349656-26356402 transcript_region:SL2.40ch05:26349656..26356402- go_terms:GO:0035091 functional_description:"PH domain containing protein (AHRD V1 **-- B6UFM0_MAIZE)"; GO:0035091 NbS00046130g0007.1 protein AED:0.50 eAED:0.50 QI:81|0.66|0.42|0.71|1|1|7|0|201; (*TAIR) AT1G69680.1 (e_value=6e-83) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr1:26205148-26206568 FORWARD LENGTH=202;; (*ITAG) Solyc01g010810.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:6209686-6214247 transcript_region:SL2.40ch01:6209686..6214247- go_terms:GO:0005085,GO:0008536 functional_description:"RAN guanine nucleotide release factor (AHRD V1 **-* B6TPU9_MAIZE); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0005085,GO:0008536 NbS00046130g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0.2|1|0.25|0|5|0|667; (*SWP) sp|Q9ZVH4|CUL3A_ARATH (e_value=0.0) Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1;; (*TAIR) AT1G26830.1 (e_value=0.0) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732;; (*ITAG) Solyc01g010820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6221769-6229793 transcript_region:SL2.40ch01:6221769..6229793+ go_terms:GO:0030332 functional_description:"Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00057848g0006.1 protein AED:0.01 eAED:0.01 QI:202|1|1|1|1|1|2|377|271; (*SWP) sp|O07015|RSBQ_BACSU (e_value=3e-48) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT3G24420.1 (e_value=3e-107) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8863111-8864883 REVERSE LENGTH=273;; (*ITAG) Solyc02g092760.2.1 (e_value=4e-78) genomic_reference:SL2.40ch02 gene_region:48299203-48300720 transcript_region:SL2.40ch02:48299203..48300720+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00040672g0012.1 protein AED:0.21 eAED:0.37 QI:66|0.66|0|1|1|1|4|0|117; (*TAIR) AT3G57090.1 (e_value=1e-44) | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170;; (*ITAG) Solyc12g099770.1.1 (e_value=2e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65121351-65124319 transcript_region:SL2.40ch12:65121351..65124319+ go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00040672g0007.1 protein AED:0.33 eAED:0.33 QI:275|0.87|0.66|1|0.87|0.88|9|0|351; (*SWP) sp|Q9JJC8|NIPA2_MOUSE (e_value=3e-78) Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1;; (*TAIR) AT1G34470.1 (e_value=2e-132) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc11g065090.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47473695-47479479 transcript_region:SL2.40ch11:47473695..47479479+ go_terms:GO:0005665 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005665 NbS00040672g0008.1 protein AED:0.43 eAED:0.43 QI:0|0.6|0.5|1|0.4|0.5|6|171|111; (*ITAG) Solyc11g065080.1.1 (e_value=4e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:47460184-47465185 transcript_region:SL2.40ch11:47460184..47465185+ functional_description:"S2 self-incompatibility locus-linked pollen 3.2 protein (AHRD V1 ***- Q7XAE8_PETIN)"; NbC26147720g0004.1 protein AED:0.32 eAED:0.32 QI:42|1|0.4|1|1|0.8|5|0|397; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=0.0) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.1 (e_value=0.0) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=699;; (*ITAG) Solyc08g080200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60686000-60692605 transcript_region:SL2.40ch08:60686000..60692605- go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00009217g0017.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|365; (*SWP) sp|Q9XI37|PV42A_ARATH (e_value=9e-114) SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1;; (*TAIR) AT1G15330.1 (e_value=7e-115) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:5274368-5275499 FORWARD LENGTH=352;; (*ITAG) Solyc06g068160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38629781-38631465 transcript_region:SL2.40ch06:38629781..38631465- functional_description:"5&apos-AMP-activated protein kinase subunit gamma-3 (AHRD V1 **-- B1PM77_SHEEP); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00009217g0016.1 protein AED:0.56 eAED:0.56 QI:0|0.33|0|0.5|0.66|0.75|4|0|106; (*ITAG) Solyc06g068170.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:38632567-38635545 transcript_region:SL2.40ch06:38632567..38635545- functional_description:"U11/U12 small nuclear ribonucleoprotein protein (AHRD V1 *-*- C1C3V0_RANCA)"; NbS00009217g0019.1 protein AED:0.10 eAED:0.10 QI:135|1|1|1|0.8|1|6|248|367; (*SWP) sp|Q8LAZ7|CSN5B_ARATH (e_value=0.0) COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2;; (*TAIR) AT1G22920.1 (e_value=0.0) | Symbols: CSN5A, JAB1, AJH1 | COP9 signalosome 5A | chr1:8109882-8111895 REVERSE LENGTH=357;; (*ITAG) Solyc11g017300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:8163274-8168190 transcript_region:SL2.40ch11:8163274..8168190- functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00056926g0006.1 protein AED:0.33 eAED:0.33 QI:232|1|1|1|1|1|5|443|247; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=1e-53) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=8e-55) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g081530.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73234362-73236339 transcript_region:SL2.40ch01:73234362..73236339- go_terms:GO:0005544 functional_description:"Annexin 3 (AHRD V1 *-*- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00056926g0005.1 protein AED:0.59 eAED:1.00 QI:0|0|0|1|1|1|2|0|61 NbS00056926g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.66|0|0.33|3|0|64 NbS00056926g0007.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|1|1|3|0|213; (*ITAG) Solyc06g008150.2.1 (e_value=8e-17) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00006023g0001.1 protein AED:0.00 eAED:0.00 QI:104|1|0.5|1|0|0|2|0|386; (*SWP) sp|Q6GLP4|RMD5A_XENLA (e_value=2e-65) Protein RMD5 homolog A OS=Xenopus laevis GN=rmnd5a PE=2 SV=1;; (*TAIR) AT4G37880.1 (e_value=2e-161) | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr4:17810183-17811349 FORWARD LENGTH=388;; (*ITAG) Solyc02g091720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47541110-47542270 transcript_region:SL2.40ch02:47541110..47542270- go_terms:GO:0005515,GO:0004842 functional_description:"Macrophage erythroblast attacher (AHRD V1 **-- C5FFR8_NANOT); contains Interpro domain(s) IPR013144 Ran binding protein-like, CRA domain "; GO:0005515,GO:0004842 NbS00006023g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|200; (*SWP) sp|P60621|COX1_RAPSA (e_value=1e-126) Cytochrome c oxidase subunit 1 OS=Raphanus sativus GN=COX1 PE=3 SV=1;; (*ITAG) ATMG01360.1 (e_value=1e-127) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=6e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00047632g0008.1 protein AED:0.07 eAED:0.07 QI:249|0.5|0.33|0.66|0.5|0.66|3|0|71; (*SWP) sp|Q7XC27|CNBL1_ORYSJ (e_value=4e-21) Calcineurin B-like protein 1 OS=Oryza sativa subsp. japonica GN=CBL1 PE=2 SV=2;; (*TAIR) AT4G17615.1 (e_value=7e-22) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g007160.2.1 (e_value=5e-27) genomic_reference:SL2.40ch08 gene_region:1710704-1715488 transcript_region:SL2.40ch08:1710704..1715488- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00047632g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.57|1|0.66|0.85|7|0|399; (*SWP) sp|Q9C809|B3GT8_ARATH (e_value=2e-155) Probable beta-1,3-galactosyltransferase 8 OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1;; (*TAIR) AT1G33430.1 (e_value=1e-156) | Symbols: | Galactosyltransferase family protein | chr1:12124438-12126052 REVERSE LENGTH=395;; (*ITAG) Solyc11g042810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34272474-34274189 transcript_region:SL2.40ch11:34272474..34274189+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00047632g0007.1 protein AED:0.27 eAED:0.44 QI:78|1|0.5|1|1|1|4|0|101; (*SWP) sp|O81445|CNBL1_ARATH (e_value=9e-53) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.1 (e_value=7e-54) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g007160.2.1 (e_value=2e-62) genomic_reference:SL2.40ch08 gene_region:1710704-1715488 transcript_region:SL2.40ch08:1710704..1715488- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00037616g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|6|0|418; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=2e-67) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1;; (*TAIR) AT1G27510.1 (e_value=2e-142) | Symbols: | Protein of unknown function (DUF3506) | chr1:9554945-9558293 REVERSE LENGTH=651;; (*ITAG) Solyc06g071430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40335709-40344949 transcript_region:SL2.40ch06:40335709..40344949+ functional_description:"T17H3.1 protein (Fragment) (AHRD V1 ***- Q9SXD0_ARATH)"; NbS00037616g0015.1 protein AED:0.33 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|0|315; (*SWP) sp|Q84WP5|CSPL8_ARATH (e_value=3e-53) CASP-like protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1;; (*TAIR) AT2G36330.1 (e_value=3e-54) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15233620-15235298 FORWARD LENGTH=283;; (*ITAG) Solyc06g071440.2.1 (e_value=6e-132) genomic_reference:SL2.40ch06 gene_region:40346154-40349090 transcript_region:SL2.40ch06:40346154..40349090+ functional_description:"UPF0497 membrane protein At2g36330 (AHRD V1 *-*- U497A_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00037616g0014.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|0|0|4|0|643; (*SWP) sp|Q9SKB2|SBIR1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana GN=SOBIR1 PE=1 SV=1;; (*TAIR) AT2G31880.1 (e_value=0.0) | Symbols: SOBIR1, EVR | Leucine-rich repeat protein kinase family protein | chr2:13554920-13556845 FORWARD LENGTH=641;; (*ITAG) Solyc06g071810.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:40623953-40625830 transcript_region:SL2.40ch06:40623953..40625830+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00042827g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|455; (*SWP) sp|Q9SY57|P2A10_ARATH (e_value=2e-133) Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1;; (*TAIR) AT1G10150.1 (e_value=2e-134) | Symbols: | Carbohydrate-binding protein | chr1:3326160-3327404 FORWARD LENGTH=414;; (*ITAG) Solyc04g077590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60137260-60140004 transcript_region:SL2.40ch04:60137260..60140004- functional_description:"Phloem protein (Fragment) (AHRD V1 *--- C6FDB1_9CONI)"; NbS00023292g0009.1 protein AED:0.15 eAED:0.18 QI:0|0.4|0|1|0.2|0.16|6|0|344; (*SWP) sp|Q93YS2|P2C51_ARATH (e_value=3e-45) Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2;; (*TAIR) AT3G63340.1 (e_value=6e-45) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc06g084100.2.1 (e_value=2e-68) genomic_reference:SL2.40ch06 gene_region:45631304-45633201 transcript_region:SL2.40ch06:45631304..45633201- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00023292g0008.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|138; (*SWP) sp|Q8H7Y8|H2AV1_ORYSJ (e_value=2e-71) Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1;; (*TAIR) AT3G54560.1 (e_value=3e-72) | Symbols: HTA11 | histone H2A 11 | chr3:20196532-20197466 FORWARD LENGTH=136;; (*ITAG) Solyc06g084090.2.1 (e_value=1e-74) genomic_reference:SL2.40ch06 gene_region:45626067-45629099 transcript_region:SL2.40ch06:45626067..45629099+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 *-*- C5XX54_SORBI); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00020451g0001.1 protein AED:0.20 eAED:0.20 QI:209|0.83|0.84|1|0.91|0.84|13|0|434; (*SWP) sp|Q96329|ACOX4_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1;; (*TAIR) AT3G51840.1 (e_value=0.0) | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436;; (*ITAG) Solyc10g076600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58885360-58889823 transcript_region:SL2.40ch10:58885360..58889823- go_terms:GO:0055114 functional_description:"Acyl-CoA dehydrogenase (AHRD V1 ***- A3XH21_LEEBM); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00020451g0103.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|210 NbS00053671g0001.1 protein AED:0.32 eAED:0.50 QI:0|0|0|1|1|1|2|0|102; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=2e-22) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=2e-23) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00023723g0001.1 protein AED:0.44 eAED:0.44 QI:126|1|0.66|1|1|1|3|0|134; (*SWP) sp|Q9FJW4|NDUS4_ARATH (e_value=3e-46) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1;; (*TAIR) AT5G67590.1 (e_value=2e-47) | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-related | chr5:26958073-26959356 FORWARD LENGTH=154;; (*ITAG) Solyc02g092270.2.1 (e_value=5e-20) genomic_reference:SL2.40ch02 gene_region:47982328-47987024 transcript_region:SL2.40ch02:47982328..47987024- go_terms:GO:0005743 functional_description:"NADH dehydrogenase (AHRD V1 -**- NDUS4_RAT); contains Interpro domain(s) IPR006885 ETC complex I subunit conserved region "; GO:0005743 NbS00009698g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|0.5|0.66|3|0|157; (*SWP) sp|Q8LFN9|AGD13_ARATH (e_value=3e-24) Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1;; (*TAIR) AT3G17980.1 (e_value=2e-69) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc12g040800.1.1 (e_value=2e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40771023-40772733 transcript_region:SL2.40ch12:40771023..40772733- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KD31_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00009698g0007.1 protein AED:0.53 eAED:0.55 QI:0|0.25|0|0.4|1|0.8|5|0|135; (*SWP) sp|Q9LU41|ACA9_ARATH (e_value=2e-39) Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2;; (*TAIR) AT3G21180.1 (e_value=2e-40) | Symbols: ACA9, ATACA9 | autoinhibited Ca(2+)-ATPase 9 | chr3:7425770-7431941 FORWARD LENGTH=1086;; (*ITAG) Solyc07g008320.2.1 (e_value=3e-41) genomic_reference:SL2.40ch07 gene_region:3079524-3097721 transcript_region:SL2.40ch07:3079524..3097721- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00020628g0008.1 protein AED:0.02 eAED:0.02 QI:303|1|0.66|1|0.5|0.33|3|0|165; (*SWP) sp|Q9LFV3|Y5157_ARATH (e_value=5e-40) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1;; (*TAIR) AT5G15730.1 (e_value=4e-41) | Symbols: CRLK2, AtCRLK2 | Protein kinase superfamily protein | chr5:5131284-5133046 FORWARD LENGTH=434;; (*ITAG) Solyc02g089290.2.1 (e_value=1e-85) genomic_reference:SL2.40ch02 gene_region:45733900-45737882 transcript_region:SL2.40ch02:45733900..45737882- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / kinase/ protein serine / threonine kinase (AHRD V1 **** C5DB47_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020628g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|438; (*SWP) sp|Q9LFV5|FK111_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1;; (*TAIR) AT5G15710.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:5122791-5124137 FORWARD LENGTH=448;; (*ITAG) Solyc02g089310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45749178-45750494 transcript_region:SL2.40ch02:45749178..45750494- functional_description:"F-box family protein (AHRD V1 ***- B9N7N7_POPTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00030425g0008.1 protein AED:0.00 eAED:0.00 QI:110|1|1|1|0.5|0.66|3|12|72; (*TAIR) AT5G17530.3 (e_value=1e-30) | Symbols: | phosphoglucosamine mutase family protein | chr5:5777716-5781863 FORWARD LENGTH=614;; (*ITAG) Solyc04g005030.2.1 (e_value=1e-33) genomic_reference:SL2.40ch04 gene_region:30217-42552 transcript_region:SL2.40ch04:30217..42552- go_terms:GO:0004614,GO:0004615 functional_description:"Phosphoglucomutase/phosphomannomutase family protein (AHRD V1 **-* A3IPW6_9CHRO); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614,GO:0004615 NbS00030425g0009.1 protein AED:0.00 eAED:0.00 QI:72|1|0|1|1|1|2|0|63; (*TAIR) AT5G17530.3 (e_value=3e-20) | Symbols: | phosphoglucosamine mutase family protein | chr5:5777716-5781863 FORWARD LENGTH=614;; (*ITAG) Solyc04g005030.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:30217-42552 transcript_region:SL2.40ch04:30217..42552- go_terms:GO:0004614,GO:0004615 functional_description:"Phosphoglucomutase/phosphomannomutase family protein (AHRD V1 **-* A3IPW6_9CHRO); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614,GO:0004615 NbS00030425g0010.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|0|2|0|223; (*TAIR) AT2G39000.1 (e_value=4e-121) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16286454-16287941 REVERSE LENGTH=291;; (*ITAG) Solyc04g025240.2.1 (e_value=7e-74) genomic_reference:SL2.40ch04 gene_region:18300694-18304018 transcript_region:SL2.40ch04:18300694..18304018- functional_description:"GCN5-related N-acetyltransferase (GNAT) family protein-like (AHRD V1 ***- Q6K836_ORYSJ)"; NbC25605535g0003.1 protein AED:0.02 eAED:0.07 QI:39|0.5|0.6|1|0.5|0.6|5|14|242; (*TAIR) AT3G25150.2 (e_value=2e-17) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc06g083300.2.1 (e_value=1e-67) genomic_reference:SL2.40ch06 gene_region:45055025-45059449 transcript_region:SL2.40ch06:45055025..45059449+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00015957g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.62|1|0.85|0.87|8|550|434; (*SWP) sp|P17783|MDHM_CITLA (e_value=0.0) Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1;; (*TAIR) AT1G53240.1 (e_value=0.0) | Symbols: mMDH1 | Lactate/malate dehydrogenase family protein | chr1:19854966-19856802 REVERSE LENGTH=341;; (*ITAG) Solyc07g062650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62561877-62565142 transcript_region:SL2.40ch07:62561877..62565142+ go_terms:GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q645N1_SOLLC); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0030060 NbS00015957g0013.1 protein AED:0.12 eAED:0.12 QI:67|1|1|1|1|1|4|246|405; (*SWP) sp|Q9LKA5|UMP1_ARATH (e_value=9e-87) Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1;; (*TAIR) AT3G15000.1 (e_value=6e-88) | Symbols: | cobalt ion binding | chr3:5050321-5052121 FORWARD LENGTH=395;; (*ITAG) Solyc10g007180.2.1 (e_value=4e-111) genomic_reference:SL2.40ch10 gene_region:1623464-1627207 transcript_region:SL2.40ch10:1623464..1627207- functional_description:"DAG protein (AHRD V1 *--- B6TDH1_MAIZE); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; NbS00015957g0015.1 protein AED:0.18 eAED:0.20 QI:0|0.4|0.33|0.83|1|1|6|0|733; (*SWP) sp|Q9LNC4|GTE4_ARATH (e_value=4e-111) Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1;; (*TAIR) AT1G06230.3 (e_value=3e-112) | Symbols: GTE4 | global transcription factor group E4 | chr1:1907626-1910183 FORWARD LENGTH=766;; (*ITAG) Solyc07g062660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62565737-62571287 transcript_region:SL2.40ch07:62565737..62571287- go_terms:GO:0004674 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0004674 NbS00015957g0007.1 protein AED:0.54 eAED:0.62 QI:393|0.4|0.33|0.66|0.6|0.5|6|0|84 NbC24638936g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|154; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=1e-97) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=5e-95) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=3e-105) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00041904g0004.1 protein AED:0.20 eAED:0.20 QI:315|0.92|0.93|0.93|0.78|0.73|15|0|534; (*SWP) sp|A7T167|GDAP2_NEMVE (e_value=7e-93) Protein GDAP2 homolog OS=Nematostella vectensis GN=gdap2 PE=3 SV=1;; (*TAIR) AT1G69340.1 (e_value=0.0) | Symbols: | appr-1-p processing enzyme family protein | chr1:26066298-26069644 FORWARD LENGTH=562;; (*ITAG) Solyc04g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:326470-332708 transcript_region:SL2.40ch04:326470..332708+ functional_description:"Appr-1-p processing domain protein (AHRD V1 *--- D5EGM7_AMICL); contains Interpro domain(s) IPR002589 Appr-1-p processing "; NbS00058568g0003.1 protein AED:0.23 eAED:0.24 QI:36|1|0.5|1|1|1|4|0|425; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=2e-160) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT5G47070.1 (e_value=2e-161) | Symbols: | Protein kinase superfamily protein | chr5:19118683-19120528 REVERSE LENGTH=410;; (*ITAG) Solyc08g077560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58707667-58711970 transcript_region:SL2.40ch08:58707667..58711970+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00059639g0004.1 protein AED:0.02 eAED:0.02 QI:146|1|0.83|1|0.8|0.5|6|0|505; (*TAIR) AT1G06660.1 (e_value=2e-63) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:2037461-2040148 REVERSE LENGTH=481;; (*ITAG) Solyc07g045010.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55403083-55407309 transcript_region:SL2.40ch07:55403083..55407309+ functional_description:"Dentin sialophosphoprotein-like (AHRD V1 *-*- Q6H4U9_ORYSJ)"; NbS00011949g0004.1 protein AED:0.22 eAED:0.22 QI:225|0.85|0.87|1|0.71|0.87|8|0|278; (*SWP) sp|Q9C8L4|GLO2O_ARATH (e_value=5e-139) Hydroxyacylglutathione hydrolase 3, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3;; (*TAIR) AT1G53580.1 (e_value=4e-140) | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 | chr1:19991542-19993250 REVERSE LENGTH=294;; (*ITAG) Solyc07g061960.2.1 (e_value=4e-170) genomic_reference:SL2.40ch07 gene_region:62048573-62053940 transcript_region:SL2.40ch07:62048573..62053940+ go_terms:GO:0004416,GO:0047951 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** D9J0E0_9CARY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0004416,GO:0047951 NbS00001811g0002.1 protein AED:0.50 eAED:0.60 QI:0|0|0.33|0.66|1|1|3|146|63 NbS00035079g0004.1 protein AED:0.44 eAED:0.52 QI:188|0|0.5|0.66|0.8|0.83|6|45|183 NbS00038246g0010.1 protein AED:0.15 eAED:0.15 QI:400|1|1|1|0.38|0.57|14|491|902; (*SWP) sp|Q8LKZ1|NORK_PEA (e_value=0.0) Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1;; (*TAIR) AT1G67720.1 (e_value=2e-114) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:25386494-25390856 FORWARD LENGTH=929;; (*ITAG) Solyc02g091590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47427695-47433832 transcript_region:SL2.40ch02:47427695..47433832- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor kinase (AHRD V1 **** B2C5V6_CASGL); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0004672,GO:0005515 NbS00038246g0009.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|229; (*TAIR) AT2G16030.1 (e_value=2e-48) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:6974196-6974891 REVERSE LENGTH=231;; (*ITAG) Solyc02g091600.1.1 (e_value=1e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47434492-47435184 transcript_region:SL2.40ch02:47434492..47435184- functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00000684g0003.1 protein AED:0.10 eAED:0.10 QI:10|1|1|1|1|1|5|571|703; (*SWP) sp|Q9ZQB9|CSLCC_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 12 OS=Arabidopsis thaliana GN=CSLC12 PE=1 SV=1;; (*TAIR) AT4G07960.1 (e_value=0.0) | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like C12 | chr4:4802628-4805114 REVERSE LENGTH=699;; (*ITAG) Solyc04g077470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59977870-59981093 transcript_region:SL2.40ch04:59977870..59981093+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00002574g0013.1 protein AED:0.30 eAED:0.30 QI:0|1|0.83|1|1|0.83|6|0|422; (*SWP) sp|Q39513|FATB_CUPHO (e_value=0.0) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1;; (*TAIR) AT1G08510.1 (e_value=0.0) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc12g006930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1348962-1352431 transcript_region:SL2.40ch12:1348962..1352431- functional_description:"Acyl-ACP thioesterase (AHRD V1 ***- A9XUG5_RICCO); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; NbS00002574g0015.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.66|1|0.5|0.33|3|0|350; (*TAIR) AT1G80400.1 (e_value=4e-85) | Symbols: | RING/U-box superfamily protein | chr1:30225864-30227360 FORWARD LENGTH=407;; (*ITAG) Solyc12g006940.1.1 (e_value=3e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1371355-1374865 transcript_region:SL2.40ch12:1371355..1374865+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00002574g0014.1 protein AED:0.18 eAED:0.18 QI:0|0.55|0.5|1|0.55|0.6|10|0|533; (*SWP) sp|Q94LW6|SUT35_ARATH (e_value=0.0) Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5 PE=2 SV=1;; (*TAIR) AT5G19600.1 (e_value=0.0) | Symbols: SULTR3;5 | sulfate transporter 3;5 | chr5:6613113-6616891 REVERSE LENGTH=634;; (*ITAG) Solyc12g006950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1379359-1384257 transcript_region:SL2.40ch12:1379359..1384257- go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- Q0WVG5_ARATH); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0016020,GO:0016021 NbS00028970g0023.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0.5|2|0|773; (*SWP) sp|O49726|PUP9_ARATH (e_value=2e-100) Probable purine permease 9 OS=Arabidopsis thaliana GN=PUP9 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=3e-100) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc02g071050.2.1 (e_value=2e-149) genomic_reference:SL2.40ch02 gene_region:35117190-35119237 transcript_region:SL2.40ch02:35117190..35119237- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00028970g0024.1 protein AED:0.19 eAED:0.19 QI:25|1|1|1|0.68|0.6|20|1762|1002; (*SWP) sp|Q6MAS9|GLGA_PARUW (e_value=1e-152) Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1;; (*TAIR) AT4G18240.1 (e_value=0.0) | Symbols: ATSS4, SSIV, SS4 | starch synthase 4 | chr4:10082221-10087044 FORWARD LENGTH=1040;; (*ITAG) Solyc02g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35105072-35115016 transcript_region:SL2.40ch02:35105072..35115016- go_terms:GO:0016757 functional_description:"Glycogen synthase (AHRD V1 *-*- D1R4V0_9CHLA); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757 NbS00028970g0025.1 protein AED:0.27 eAED:0.44 QI:29|0.5|0.42|1|0|0.28|7|0|279; (*SWP) sp|Q8LG98|OTUBL_ARATH (e_value=7e-102) Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2;; (*TAIR) AT1G28120.1 (e_value=5e-103) | Symbols: | CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:9813219-9815143 REVERSE LENGTH=306;; (*ITAG) Solyc04g045480.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:32819448-32828520 transcript_region:SL2.40ch04:32819448..32828520+ go_terms:GO:0043130 functional_description:"Ubiquitin thioesterase otubain-like protein (AHRD V1 **** D3TRD1_GLOMM); contains Interpro domain(s) IPR016615 Ubiquitin thioesterase Otubain "; GO:0043130 NbS00028970g0026.1 protein AED:0.23 eAED:0.25 QI:469|0.7|0.63|1|0.6|0.63|11|672|996; (*SWP) sp|Q86US8|EST1A_HUMAN (e_value=2e-22) Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2;; (*TAIR) AT5G19400.2 (e_value=2e-149) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059;; (*ITAG) Solyc12g019960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:12754300-12757862 transcript_region:SL2.40ch12:12754300..12757862+ functional_description:"Smg-7 homolog nonsense mediated mRNA decay factor (C. elegans) (Fragment) (AHRD V1 **-- B1ALB4_HUMAN); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00028970g0004.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|265; (*SWP) sp|P27493|CB22_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=1e-176) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc02g070990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35095230-35096027 transcript_region:SL2.40ch02:35095230..35096027+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a/b binding protein (AHRD V1 **** Q41422_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00004113g0003.1 protein AED:0.14 eAED:0.14 QI:258|1|1|1|0.83|0.71|7|326|242; (*SWP) sp|Q54X16|U559_DICDI (e_value=1e-89) UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2;; (*TAIR) AT1G61150.1 (e_value=1e-135) | Symbols: | LisH and RanBPM domains containing protein | chr1:22542928-22544355 FORWARD LENGTH=243;; (*ITAG) Solyc03g006580.2.1 (e_value=2e-158) genomic_reference:SL2.40ch03 gene_region:1153790-1163207 transcript_region:SL2.40ch03:1153790..1163207+ go_terms:GO:0005515 functional_description:"Ran-binding proteins 9/10 homolog (AHRD V1 *--* RBP9X_DROME); contains Interpro domain(s) IPR019589 Ran binding protein, CRA domain "; GO:0005515 NbS00003503g0005.1 protein AED:0.23 eAED:0.23 QI:213|1|0.92|1|0.66|0.61|13|228|495; (*SWP) sp|Q8NT41|MGTA_CORGL (e_value=1e-42) GDP-mannose-dependent alpha-mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=mgtA PE=1 SV=1;; (*TAIR) AT5G01220.1 (e_value=0.0) | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2 | chr5:86907-89885 REVERSE LENGTH=510;; (*ITAG) Solyc09g014300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5790323-5796370 transcript_region:SL2.40ch09:5790323..5796370- go_terms:GO:0046510 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 **-- B6T479_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0046510 NbS00060897g0002.1 protein AED:0.28 eAED:0.40 QI:0|0|0.16|1|1|1|6|0|342; (*SWP) sp|P54120|AIG1_ARATH (e_value=3e-14) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33970.5 (e_value=8e-25) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12349614-12350960 REVERSE LENGTH=342;; (*ITAG) Solyc06g064920.1.1 (e_value=8e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36869170-36871075 transcript_region:SL2.40ch06:36869170..36871075+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 ***- Q3SX31_BOVIN); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00060897g0006.1 protein AED:0.43 eAED:0.43 QI:0|0.33|0|0.75|0.66|0.75|4|0|135; (*SWP) sp|O81025|P2A03_ARATH (e_value=2e-12) Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1;; (*TAIR) AT1G33830.1 (e_value=1e-14) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12279947-12281406 REVERSE LENGTH=225;; (*ITAG) Solyc11g028010.1.1 (e_value=1e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00013624g0002.1 protein AED:0.02 eAED:0.02 QI:914|1|1|1|0.71|0.62|8|1166|373; (*SWP) sp|P36917|XYNA_THESA (e_value=2e-12) Endo-1,4-beta-xylanase A OS=Thermoanaerobacter saccharolyticum GN=xynA PE=1 SV=1;; (*TAIR) AT1G58370.1 (e_value=0.0) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc04g077190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59708320-59715771 transcript_region:SL2.40ch04:59708320..59715771+ go_terms:GO:0031176 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *-** B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0031176 NbS00055631g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|401; (*SWP) sp|P81392|MYB06_ANTMA (e_value=6e-110) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT5G62470.2 (e_value=6e-94) | Symbols: MYB96 | myb domain protein 96 | chr5:25079434-25080858 REVERSE LENGTH=352;; (*ITAG) Solyc06g069850.2.1 (e_value=2e-132) genomic_reference:SL2.40ch06 gene_region:39877429-39879299 transcript_region:SL2.40ch06:39877429..39879299- go_terms:GO:0003677,GO:0045449 functional_description:"MYB family transcription factor (AHRD V1 **-- Q9SCU7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00060182g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|648; (*SWP) sp|O65709|FAO4A_ARATH (e_value=0.0) Long-chain-alcohol oxidase FAO4A OS=Arabidopsis thaliana GN=FAO4A PE=2 SV=2;; (*TAIR) AT4G19380.1 (e_value=0.0) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr4:10568427-10572288 REVERSE LENGTH=726;; (*ITAG) Solyc08g075240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56537027-56542613 transcript_region:SL2.40ch08:56537027..56542613+ go_terms:GO:0009055,GO:0046577 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00000937g0003.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|566; (*SWP) sp|B9S2H4|Y232_RICCO (e_value=0.0) UPF0392 protein RCOM_0530710 OS=Ricinus communis GN=RCOM_0699480 PE=3 SV=1;; (*TAIR) AT1G27200.1 (e_value=0.0) | Symbols: | Domain of unknown function (DUF23) | chr1:9449812-9451539 REVERSE LENGTH=575;; (*ITAG) Solyc05g006560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1195251-1197053 transcript_region:SL2.40ch05:1195251..1197053+ functional_description:"Ring zinc finger protein (Fragment) (AHRD V1 *--- A6MH00_LILLO); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00032107g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|427; (*SWP) sp|Q9S9U6|1A111_ARATH (e_value=4e-155) 1-aminocyclopropane-1-carboxylate synthase 11 OS=Arabidopsis thaliana GN=ACS11 PE=1 SV=1;; (*TAIR) AT4G08040.1 (e_value=3e-156) | Symbols: ACS11 | 1-aminocyclopropane-1-carboxylate synthase 11 | chr4:4887112-4888939 FORWARD LENGTH=460;; (*ITAG) Solyc04g077410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59907843-59910406 transcript_region:SL2.40ch04:59907843..59910406- go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q4LDM2_SOLLC); contains Interpro domain(s) IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00032107g0012.1 protein AED:0.33 eAED:0.34 QI:6|1|0.66|1|1|0.83|6|0|233; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=2e-98) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT3G49720.2 (e_value=2e-99) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440192-18441655 REVERSE LENGTH=261;; (*ITAG) Solyc04g077420.2.1 (e_value=2e-138) genomic_reference:SL2.40ch04 gene_region:59927141-59933091 transcript_region:SL2.40ch04:59927141..59933091- functional_description:"Unknown Protein (AHRD V1)"; NbS00002795g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|160; (*TAIR) AT1G52140.1 (e_value=2e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=7e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00002795g0202.1 protein AED:0.21 eAED:0.21 QI:0|0.82|0.83|0.94|1|1|18|0|574 NbS00002795g0214.1 protein AED:0.34 eAED:0.76 QI:0|0|0|1|0.33|0.25|4|0|739 NbS00002795g0206.1 protein AED:0.06 eAED:0.06 QI:150|0.5|0.6|1|1|1|5|156|531 NbS00002795g0216.1 protein AED:0.32 eAED:0.32 QI:0|1|0.33|1|0.5|0.66|3|0|345 NbS00009842g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.6|1|0.75|0.6|5|408|241; (*SWP) sp|P51427|RS52_ARATH (e_value=5e-125) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=4e-126) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=2e-140) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00043229g0001.1 protein AED:0.28 eAED:0.29 QI:0|0.16|0.14|0.85|1|1|7|0|651; (*SWP) sp|P62598|ARR12_ARATH (e_value=6e-96) Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2;; (*TAIR) AT2G25180.1 (e_value=5e-97) | Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596;; (*ITAG) Solyc07g005140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:162324-167069 transcript_region:SL2.40ch07:162324..167069+ go_terms:GO:0003700 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0003700 NbS00016668g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|0.66|1|1|3|0|355; (*SWP) sp|Q0WW21|U75C1_ARATH (e_value=5e-52) UDP-glycosyltransferase 75C1 OS=Arabidopsis thaliana GN=UGT75C1 PE=2 SV=2;; (*TAIR) AT4G14090.1 (e_value=4e-53) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:8122434-8123804 REVERSE LENGTH=456;; (*ITAG) Solyc12g098600.1.1 (e_value=8e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64390524-64391915 transcript_region:SL2.40ch12:64390524..64391915+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00016668g0010.1 protein AED:0.00 eAED:0.00 QI:8|1|1|1|0|0|2|227|92 NbS00016668g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|106|464; (*SWP) sp|Q0WW21|U75C1_ARATH (e_value=2e-124) UDP-glycosyltransferase 75C1 OS=Arabidopsis thaliana GN=UGT75C1 PE=2 SV=2;; (*TAIR) AT4G14090.1 (e_value=2e-125) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:8122434-8123804 REVERSE LENGTH=456;; (*ITAG) Solyc12g098580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64384676-64386073 transcript_region:SL2.40ch12:64384676..64386073- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00016668g0002.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|1|1|4|0|345; (*ITAG) Solyc11g013210.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00015219g0009.1 protein AED:0.05 eAED:0.05 QI:83|1|1|1|0.33|0.25|4|107|366; (*SWP) sp|Q8K385|FRRS1_MOUSE (e_value=1e-11) Ferric-chelate reductase 1 OS=Mus musculus GN=FRRS1 PE=1 SV=1;; (*TAIR) AT3G07570.1 (e_value=2e-133) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:2418205-2420206 REVERSE LENGTH=369;; (*ITAG) Solyc09g019980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:17885037-17890116 transcript_region:SL2.40ch09:17885037..17890116+ functional_description:"Ferric-chelate reductase 1 (AHRD V1 *--- C0HB47_SALSA); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00015219g0010.1 protein AED:0.18 eAED:0.20 QI:43|0.81|0.83|1|0.90|0.91|12|101|924; (*SWP) sp|O22207|UBP5_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2;; (*TAIR) AT2G40930.1 (e_value=0.0) | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific protease 5 | chr2:17076714-17082192 REVERSE LENGTH=924;; (*ITAG) Solyc09g019970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:17868711-17884051 transcript_region:SL2.40ch09:17868711..17884051+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9HDU9_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0004197 NbS00002018g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|4|0|465; (*TAIR) AT3G51280.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19037229-19038781 FORWARD LENGTH=430;; (*ITAG) Solyc02g083640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41548650-41550974 transcript_region:SL2.40ch02:41548650..41550974- go_terms:GO:0005488 functional_description:"Male sterility 5 family protein (Fragment) (AHRD V1 *-*- B1Q3A0_BRACM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017561g0001.1 protein AED:0.16 eAED:0.19 QI:0|0|0|0.75|1|1|4|0|306; (*ITAG) Solyc11g020770.1.1 (e_value=2e-125) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:11980206-11988202 transcript_region:SL2.40ch11:11980206..11988202+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017561g0005.1 protein AED:0.18 eAED:0.33 QI:0|0|0|0.8|0.25|0.2|5|0|254; (*SWP) sp|Q8IYD8|FANCM_HUMAN (e_value=4e-31) Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2;; (*TAIR) AT1G35530.2 (e_value=2e-82) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390;; (*ITAG) Solyc11g020760.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11968644-11975150 transcript_region:SL2.40ch11:11968644..11975150+ go_terms:GO:0005524 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00023117g0001.1 protein AED:0.07 eAED:0.13 QI:0|0.5|0|1|1|1|5|0|322; (*SWP) sp|Q54M22|ODBA_DICDI (e_value=2e-53) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1;; (*TAIR) AT1G21400.1 (e_value=3e-96) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472;; (*ITAG) Solyc06g059840.2.1 (e_value=1e-138) genomic_reference:SL2.40ch06 gene_region:34119582-34123859 transcript_region:SL2.40ch06:34119582..34123859- go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbS00025921g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.6|1|1|0.6|5|0|301; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=8e-60) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G01900.1 (e_value=4e-139) | Symbols: | DNAse I-like superfamily protein | chr2:406136-408933 FORWARD LENGTH=417;; (*ITAG) Solyc01g005090.2.1 (e_value=3e-168) genomic_reference:SL2.40ch01 gene_region:82959-86723 transcript_region:SL2.40ch01:82959..86723- go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00025921g0010.1 protein AED:0.21 eAED:0.21 QI:67|0.6|0.66|0.66|1|1|6|0|213; (*TAIR) AT1G68080.2 (e_value=2e-51) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:25517530-25519240 FORWARD LENGTH=339;; (*ITAG) Solyc01g005100.2.1 (e_value=4e-63) genomic_reference:SL2.40ch01 gene_region:91809-97289 transcript_region:SL2.40ch01:91809..97289- go_terms:GO:0055114 functional_description:"Prolyl 3-hydroxylase 1 (AHRD V1 *--- P3H1_CHICK); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00025921g0011.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.8|0.8|0.5|0.4|5|222|320; (*TAIR) AT1G68080.1 (e_value=1e-74) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:25517530-25519240 FORWARD LENGTH=389;; (*ITAG) Solyc01g005100.2.1 (e_value=1e-158) genomic_reference:SL2.40ch01 gene_region:91809-97289 transcript_region:SL2.40ch01:91809..97289- go_terms:GO:0055114 functional_description:"Prolyl 3-hydroxylase 1 (AHRD V1 *--- P3H1_CHICK); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00006982g0004.1 protein AED:0.17 eAED:0.17 QI:304|1|1|1|0.7|0.81|11|0|992; (*SWP) sp|Q9C5U0|AHK4_ARATH (e_value=0.0) Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1;; (*TAIR) AT2G01830.2 (e_value=0.0) | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain containing histidine kinase protein | chr2:363332-368016 REVERSE LENGTH=1080;; (*ITAG) Solyc04g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1762165-1770080 transcript_region:SL2.40ch04:1762165..1770080- go_terms:GO:0004673 functional_description:"Histidine kinase 2 (AHRD V1 **** A3QVR9_LOTJA); contains Interpro domain(s) IPR006189 CHASE "; GO:0004673 NbS00032057g0008.1 protein AED:0.19 eAED:0.19 QI:123|1|1|1|1|1|9|367|485; (*TAIR) AT3G52870.1 (e_value=4e-178) | Symbols: | IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456;; (*ITAG) Solyc10g083360.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62525995-62530324 transcript_region:SL2.40ch10:62525995..62530324+ functional_description:"Calmodulin binding protein (AHRD V1 ***- B6SL12_MAIZE)"; NbS00032057g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.8|0.66|1|1|1|6|376|453; (*ITAG) Solyc09g009760.1.1 (e_value=9e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3241071-3246743 transcript_region:SL2.40ch09:3241071..3246743- go_terms:GO:0006355 functional_description:"Z-box binding factor 2 protein (AHRD V1 *-*- Q5K1L6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00054870g0006.1 protein AED:0.28 eAED:0.61 QI:0|0.25|0|1|0|0|5|0|139; (*TAIR) AT4G27640.1 (e_value=3e-27) | Symbols: | ARM repeat superfamily protein | chr4:13798013-13802976 REVERSE LENGTH=1048;; (*ITAG) Solyc01g104070.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:84302060-84310824 transcript_region:SL2.40ch01:84302060..84310824- go_terms:GO:0006886,GO:0005488 functional_description:"Importin beta (AHRD V1 **-- D2VK12_NAEGR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00002149g0004.1 protein AED:0.28 eAED:0.38 QI:0|0|0|1|0|0|4|0|385; (*ITAG) Solyc01g103870.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:84136156-84136533 transcript_region:SL2.40ch01:84136156..84136533+ go_terms:GO:0005634 functional_description:"SRF-type transcription factor family protein (AHRD V1 ***- Q53J20_SOLLC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00060813g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|120 NbC26259638g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|3|0|198; (*SWP) sp|Q9LQQ1|PPR20_ARATH (e_value=1e-53) Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1;; (*TAIR) AT1G07740.1 (e_value=1e-54) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2399117-2400496 REVERSE LENGTH=459;; (*ITAG) Solyc11g073230.1.1 (e_value=1e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009547g0006.1 protein AED:0.37 eAED:0.38 QI:0|0.5|0.33|1|1|1|3|0|258; (*TAIR) AT5G39990.1 (e_value=7e-146) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:16004494-16006428 FORWARD LENGTH=447;; (*ITAG) Solyc03g077910.2.1 (e_value=1e-165) genomic_reference:SL2.40ch03 gene_region:42074091-42078897 transcript_region:SL2.40ch03:42074091..42078897- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00042531g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.8|1|1|5|0|495; (*SWP) sp|Q9ZS97|AB8I_ARATH (e_value=0.0) UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1;; (*TAIR) AT4G04770.1 (e_value=0.0) | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding cassette protein 1 | chr4:2427998-2429785 REVERSE LENGTH=557;; (*ITAG) Solyc02g080440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39231799-39236517 transcript_region:SL2.40ch02:39231799..39236517+ go_terms:GO:0005515 functional_description:"FeS assembly protein SufB (AHRD V1 ***- Q3MG36_ANAVT); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB "; GO:0005515 NbS00054069g0005.1 protein AED:0.36 eAED:0.38 QI:73|1|0.6|1|1|1|5|0|228; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=5e-31) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1;; (*TAIR) AT2G14110.1 (e_value=2e-105) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:5952005-5953002 FORWARD LENGTH=190;; (*ITAG) Solyc01g105970.2.1 (e_value=3e-132) genomic_reference:SL2.40ch01 gene_region:85731956-85735731 transcript_region:SL2.40ch01:85731956..85735731- go_terms:GO:0000287,GO:0016791 functional_description:"Magnesium-dependent phosphatase-1 family protein expressed (AHRD V1 **** Q84R45_ORYSJ); contains Interpro domain(s) IPR010036 Magnesium-dependent phosphatase-1 "; GO:0000287,GO:0016791 NbS00054069g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.57|0.5|1|1|1|8|0|577; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=1e-150) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25830.1 (e_value=5e-122) | Symbols: ATTPS-CIN, TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9447545-9450316 FORWARD LENGTH=600;; (*ITAG) Solyc01g105900.2.1 (e_value=2e-162) genomic_reference:SL2.40ch01 gene_region:85679830-85682286 transcript_region:SL2.40ch01:85679830..85682286+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00005507g0005.1 protein AED:0.01 eAED:0.01 QI:193|1|1|1|1|1|2|552|149; (*SWP) sp|Q9M7N6|MAF1_SOLLC (e_value=6e-53) MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1;; (*TAIR) AT1G47200.1 (e_value=3e-39) | Symbols: WPP2 | WPP domain protein 2 | chr1:17298181-17298723 REVERSE LENGTH=180;; (*ITAG) Solyc04g078380.1.1 (e_value=4e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60707481-60707939 transcript_region:SL2.40ch04:60707481..60707939+ go_terms:GO:0005515 functional_description:"MFP1 attachment factor 1 (AHRD V1 **-- Q9M7N4_SOYBN)"; GO:0005515 NbS00017935g0003.1 protein AED:0.00 eAED:0.00 QI:240|1|0.5|1|1|1|2|0|284; (*SWP) sp|Q9XF88|CB4B_ARATH (e_value=4e-162) Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1;; (*TAIR) AT3G08940.2 (e_value=3e-163) | Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287;; (*ITAG) Solyc09g014520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6145784-6147813 transcript_region:SL2.40ch09:6145784..6147813- go_terms:GO:0005515 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 **** CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515 NbS00038050g0004.1 protein AED:0.02 eAED:0.07 QI:0|0.5|0|0.66|0|0|3|0|239; (*ITAG) Solyc02g070700.1.1 (e_value=9e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34937075-34938380 transcript_region:SL2.40ch02:34937075..34938380+ functional_description:"HMG-I and HMG-Y DNA-binding (AHRD V1 *-*- Q2HW76_MEDTR); contains Interpro domain(s) IPR014977 WRC "; NbS00012363g0006.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|74; (*TAIR) AT5G56940.1 (e_value=8e-27) | Symbols: | Ribosomal protein S16 family protein | chr5:23030879-23032200 FORWARD LENGTH=135;; (*ITAG) Solyc07g008660.2.1 (e_value=4e-31) genomic_reference:SL2.40ch07 gene_region:3593472-3596877 transcript_region:SL2.40ch07:3593472..3596877- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S16 (AHRD V1 ***- B3IWG3_SOLLC); contains Interpro domain(s) IPR000307 Ribosomal protein S16 "; GO:0003735,GO:0005515 NbS00046996g0012.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|996; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=0.0) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT1G72180.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:27164074-27167204 FORWARD LENGTH=977;; (*ITAG) Solyc06g065260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37091747-37095119 transcript_region:SL2.40ch06:37091747..37095119+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00046996g0011.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|62 NbS00046996g0013.1 protein AED:0.01 eAED:0.01 QI:416|0.5|0.8|0.8|0.5|0.4|5|391|286 NbS00023298g0013.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|1|1|3|0|320; (*SWP) sp|Q6P7R8|DHB12_RAT (e_value=5e-67) Estradiol 17-beta-dehydrogenase 12 OS=Rattus norvegicus GN=Hsd17b12 PE=2 SV=1;; (*TAIR) AT1G67730.1 (e_value=8e-160) | Symbols: YBR159, KCR1, ATKCR1 | beta-ketoacyl reductase 1 | chr1:25391676-25393365 FORWARD LENGTH=318;; (*ITAG) Solyc02g093640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49003652-49006247 transcript_region:SL2.40ch02:49003652..49006247- go_terms:GO:0045703 functional_description:"3-ketoacyl-CoA reductase 1 (AHRD V1 **-- Q0VH88_GOSHI); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0045703 NbS00023298g0015.1 protein AED:0.29 eAED:0.29 QI:348|0.88|0.8|1|0.88|0.8|10|0|599; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=0.0) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT5G40640.1 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27390.1); Has 104 Blast hits to 102 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:16277345-16280258 FORWARD LENGTH=586;; (*ITAG) Solyc02g093630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48999291-49003613 transcript_region:SL2.40ch02:48999291..49003613+ functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 **-- Y3739_ARATH)"; NbS00023298g0014.1 protein AED:0.30 eAED:0.30 QI:0|1|0.5|1|1|0.75|4|0|402; (*SWP) sp|Q8N5M1|ATPF2_HUMAN (e_value=3e-23) ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1;; (*TAIR) AT5G40660.1 (e_value=8e-129) | Symbols: | ATP12 protein-related | chr5:16283650-16285161 REVERSE LENGTH=325;; (*ITAG) Solyc02g093690.2.1 (e_value=3e-168) genomic_reference:SL2.40ch02 gene_region:49018673-49022176 transcript_region:SL2.40ch02:49018673..49022176- go_terms:GO:0005515 functional_description:"ATP12 ATPase (AHRD V1 ***- B6TXI2_MAIZE); contains Interpro domain(s) IPR011419 ATP12, ATPase F1F0-assembly protein "; GO:0005515 NbS00051063g0003.1 protein AED:0.13 eAED:0.13 QI:189|0.9|0.85|1|0.85|0.90|21|0|940; (*SWP) sp|B0F9L4|GOGC6_ARATH (e_value=0.0) Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2;; (*TAIR) AT3G27530.1 (e_value=0.0) | Symbols: GC6, MAG4 | golgin candidate 6 | chr3:10193778-10199659 REVERSE LENGTH=914;; (*ITAG) Solyc08g081410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61641833-61651949 transcript_region:SL2.40ch08:61641833..61651949+ go_terms:GO:0016020,GO:0005488 functional_description:"General vesicular transport factor p115 (AHRD V1 *--- B0WXD3_CULQU); contains Interpro domain(s) IPR006955 Uso1/p115 like vesicle tethering protein, C-terminal "; GO:0016020,GO:0005488 NbS00001429g0005.1 protein AED:0.22 eAED:0.25 QI:13|0.75|0.2|1|0.75|0.4|5|0|753; (*TAIR) AT1G60560.1 (e_value=0.0) | Symbols: | SWIM zinc finger family protein | chr1:22308791-22311277 REVERSE LENGTH=703;; (*ITAG) Solyc04g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3283806-3292746 transcript_region:SL2.40ch04:3283806..3292746+ go_terms:GO:0008270 functional_description:"Zinc ion binding protein (AHRD V1 ***- D7MH91_ARALY); contains Interpro domain(s) IPR007527 Zinc finger, SWIM-type "; GO:0008270 NbS00031874g0005.1 protein AED:0.07 eAED:0.08 QI:21|1|0.83|1|1|1|6|455|156; (*SWP) sp|Q8VE80|THOC3_MOUSE (e_value=1e-53) THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1;; (*TAIR) AT5G56130.1 (e_value=1e-100) | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like superfamily protein | chr5:22722755-22725065 REVERSE LENGTH=315;; (*ITAG) Solyc07g066060.2.1 (e_value=7e-106) genomic_reference:SL2.40ch07 gene_region:64813613-64819322 transcript_region:SL2.40ch07:64813613..64819322- go_terms:GO:0000166 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 **-* GBLP_DICDI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00023624g0016.1 protein AED:0.13 eAED:0.13 QI:258|0.75|0.8|1|0.75|0.6|5|567|306; (*SWP) sp|P48489|PP1_ORYSJ (e_value=6e-177) Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2;; (*TAIR) AT2G39840.1 (e_value=2e-173) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc05g055060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63996131-64002035 transcript_region:SL2.40ch05:63996131..64002035- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9S7J9_RICCO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00023624g0009.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|270; (*SWP) sp|Q93VK0|PPCK2_ARATH (e_value=5e-97) Phosphoenolpyruvate carboxylase kinase 2 OS=Arabidopsis thaliana GN=PPCK2 PE=1 SV=2;; (*TAIR) AT3G04530.1 (e_value=4e-98) | Symbols: PPCK2, PEPCK2, ATPPCK2 | phosphoenolpyruvate carboxylase kinase 2 | chr3:1221546-1222456 FORWARD LENGTH=278;; (*ITAG) Solyc04g009900.2.1 (e_value=2e-149) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023624g0010.1 protein AED:0.12 eAED:0.12 QI:311|1|1|1|0.77|0.9|10|359|534; (*SWP) sp|Q8GWB7|GUX6_ARATH (e_value=0.0) Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1;; (*TAIR) AT5G18480.1 (e_value=0.0) | Symbols: PGSIP6 | plant glycogenin-like starch initiation protein 6 | chr5:6131307-6133787 REVERSE LENGTH=537;; (*ITAG) Solyc05g055040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63956995-63969206 transcript_region:SL2.40ch05:63956995..63969206+ go_terms:GO:0016758 functional_description:"Glycogenin-like protein (AHRD V1 *-*- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00023624g0004.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|88; (*TAIR) AT3G27100.1 (e_value=8e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, enhancer of yellow 2 (InterPro:IPR018783); Has 288 Blast hits to 288 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:9994743-9995923 REVERSE LENGTH=115;; (*ITAG) Solyc02g068110.2.1 (e_value=4e-22) genomic_reference:SL2.40ch02 gene_region:32730904-32734592 transcript_region:SL2.40ch02:32730904..32734592+ go_terms:GO:0030374 functional_description:"Enhancer of yellow 2 transcription factor homolog (AHRD V1 **** C1BWN3_ESOLU); contains Interpro domain(s) IPR018783 Transcription factor, enhancer of yellow 2 "; GO:0030374 NbS00025155g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0|0.33|3|0|261; (*SWP) sp|P81394|MYB15_ANTMA (e_value=9e-56) Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1;; (*TAIR) AT5G14340.1 (e_value=2e-62) | Symbols: AtMYB40, MYB40 | myb domain protein 40 | chr5:4623367-4624779 FORWARD LENGTH=263;; (*ITAG) Solyc02g093740.2.1 (e_value=6e-73) genomic_reference:SL2.40ch02 gene_region:49050918-49052171 transcript_region:SL2.40ch02:49050918..49052171- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LY95_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00025155g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.87|1|1|1|8|0|274; (*SWP) sp|P57758|CTNS_ARATH (e_value=5e-119) Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1;; (*TAIR) AT5G40670.1 (e_value=4e-120) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270;; (*ITAG) Solyc03g005120.2.1 (e_value=2e-172) genomic_reference:SL2.40ch03 gene_region:77827-81235 transcript_region:SL2.40ch03:77827..81235- go_terms:GO:0015184 functional_description:"Cystine transporter Cystinosin (AHRD V1 **** Q2URL9_ASPOR); contains Interpro domain(s) IPR005282 Lysosomal cystine transporter "; GO:0015184 NbS00026432g0009.1 protein AED:0.05 eAED:0.05 QI:116|1|1|1|1|1|2|210|288; (*SWP) sp|Q9FM03|DOF56_ARATH (e_value=1e-40) Dof zinc finger protein DOF5.6 OS=Arabidopsis thaliana GN=DOF5.6 PE=2 SV=2;; (*TAIR) AT5G62940.1 (e_value=9e-42) | Symbols: HCA2, DOF5.6 | Dof-type zinc finger DNA-binding family protein | chr5:25257183-25258504 REVERSE LENGTH=372;; (*ITAG) Solyc06g071480.2.1 (e_value=1e-114) genomic_reference:SL2.40ch06 gene_region:40383824-40385828 transcript_region:SL2.40ch06:40383824..40385828+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein 12 (AHRD V1 *-*- A5HWG1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00026432g0013.1 protein AED:0.17 eAED:0.36 QI:364|0|0.5|1|0|0|2|0|101 NbS00026432g0002.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|1097; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=9e-22) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G09670.2 (e_value=3e-24) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726;; (*ITAG) Solyc06g071490.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:40387328-40390735 transcript_region:SL2.40ch06:40387328..40390735- functional_description:"Serine/threonine-protein kinase ATM (AHRD V1 *--- ATM_ARATH); contains Interpro domain(s) IPR000313 PWWP "; NbS00026432g0003.1 protein AED:0.16 eAED:0.19 QI:0|0|0|1|1|1|2|0|78; (*ITAG) Solyc03g097080.2.1 (e_value=6e-25) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00014246g0007.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|0.66|0.75|4|259|235; (*SWP) sp|C4XGC2|WRBA_DESMR (e_value=7e-55) Flavoprotein WrbA OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G27270.1 (e_value=4e-122) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=4e-123) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00014246g0002.1 protein AED:0.10 eAED:0.10 QI:286|1|0.9|1|0.66|0.6|10|337|453; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=1e-52) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT3G20640.1 (e_value=1e-53) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454;; (*ITAG) Solyc02g079760.2.1 (e_value=4e-166) genomic_reference:SL2.40ch02 gene_region:38783027-38785687 transcript_region:SL2.40ch02:38783027..38785687- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00040344g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.14|1|0.33|0.42|7|612|292; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=4e-15) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*ITAG) Solyc11g062180.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46115221-46115796 transcript_region:SL2.40ch11:46115221..46115796+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00014989g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.81|0.75|0.91|0.81|0.83|12|0|535; (*SWP) sp|Q8GUM5|NICA_ARATH (e_value=0.0) Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1;; (*TAIR) AT3G52640.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=676;; (*ITAG) Solyc11g011480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4526911-4536134 transcript_region:SL2.40ch11:4526911..4536134- go_terms:GO:0031177,GO:0016021 functional_description:"Nicastrin (AHRD V1 ***- A8JFJ5_CHLRE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0031177,GO:0016021 NbS00044781g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.75|1|0.66|0.75|4|0|106; (*SWP) sp|P11796|SODM_NICPL (e_value=2e-65) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=8e-55) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=6e-62) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00031739g0005.1 protein AED:0.14 eAED:0.43 QI:0|0|0.33|0.66|0.5|0.33|3|181|72; (*ITAG) Solyc04g056540.2.1 (e_value=1e-16) genomic_reference:SL2.40ch04 gene_region:53638377-53647853 transcript_region:SL2.40ch04:53638377..53647853+ go_terms:GO:0008835 functional_description:"Riboflavin biosynthesis protein RibD (AHRD V1 ***- B2J2B9_NOSP7); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0008835 NbC23731719g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|0|1|0|60; (*TAIR) AT1G15740.1 (e_value=1e-20) | Symbols: | Leucine-rich repeat family protein | chr1:5411509-5414544 FORWARD LENGTH=585;; (*ITAG) Solyc07g007400.2.1 (e_value=3e-26) genomic_reference:SL2.40ch07 gene_region:2130546-2133345 transcript_region:SL2.40ch07:2130546..2133345- functional_description:"Leucine-rich repeat-like protein (AHRD V1 **-- Q6K620_ORYSJ)"; NbS00005532g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|174; (*ITAG) Solyc11g068410.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00005532g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|430; (*SWP) sp|Q9LT79|PUB25_ARATH (e_value=3e-37) U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1;; (*TAIR) AT3G19380.1 (e_value=2e-38) | Symbols: PUB25 | plant U-box 25 | chr3:6714602-6715867 REVERSE LENGTH=421;; (*ITAG) Solyc05g056500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64916177-64917382 transcript_region:SL2.40ch05:64916177..64917382+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KF20_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00005532g0009.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.4|0.8|1|1|5|0|331; (*TAIR) AT5G62270.2 (e_value=2e-122) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). | chr5:25012227-25014486 FORWARD LENGTH=420;; (*ITAG) Solyc05g056510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64919063-64924412 transcript_region:SL2.40ch05:64919063..64924412+ functional_description:"Mucin-like protein (AHRD V1 ***- Q8S2G4_ORYSJ)"; NbS00010073g0012.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|0.66|0|0.66|3|0|505; (*SWP) sp|O04376|2A5B_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1;; (*TAIR) AT3G09880.1 (e_value=0.0) | Symbols: ATB' BETA | Protein phosphatase 2A regulatory B subunit family protein | chr3:3029902-3031931 FORWARD LENGTH=499;; (*ITAG) Solyc09g008400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1854557-1859965 transcript_region:SL2.40ch09:1854557..1859965- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_HUMAN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00010073g0013.1 protein AED:0.19 eAED:0.22 QI:0|0.66|0.75|1|0.33|0.25|4|0|220; (*SWP) sp|Q9LX82|MYB48_ARATH (e_value=5e-48) Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1;; (*TAIR) AT3G53200.1 (e_value=3e-54) | Symbols: AtMYB27, MYB27 | myb domain protein 27 | chr3:19718426-19719394 REVERSE LENGTH=238;; (*ITAG) Solyc10g083900.1.1 (e_value=4e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62942836-62943825 transcript_region:SL2.40ch10:62942836..62943825- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00010073g0014.1 protein AED:0.36 eAED:0.41 QI:218|0.5|0.55|1|0.37|0.44|9|368|299; (*SWP) sp|Q94A16|CP21C_ARATH (e_value=1e-60) Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2;; (*TAIR) AT3G66654.2 (e_value=3e-68) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:2088694-2090297 FORWARD LENGTH=236;; (*ITAG) Solyc09g008410.2.1 (e_value=2e-120) genomic_reference:SL2.40ch09 gene_region:1861145-1869636 transcript_region:SL2.40ch09:1861145..1869636- go_terms:GO:0051082 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- D8SL30_SELML); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082 NbS00002835g0008.1 protein AED:0.27 eAED:0.30 QI:415|0.56|0.57|0.92|0.56|0.57|26|297|1053; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=2e-63) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT2G01460.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:206136-211765 FORWARD LENGTH=955;; (*ITAG) Solyc05g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2409481-2425202 transcript_region:SL2.40ch05:2409481..2425202- go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0016301 NbS00002835g0009.1 protein AED:0.24 eAED:0.31 QI:0|0.45|0.33|1|0.54|0.66|12|0|651; (*SWP) sp|Q9SXS2|SUT33_ARATH (e_value=3e-156) Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2;; (*TAIR) AT1G23090.1 (e_value=3e-157) | Symbols: AST91, SULTR3;3 | sulfate transporter 91 | chr1:8185238-8188954 REVERSE LENGTH=631;; (*ITAG) Solyc05g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2404490-2408988 transcript_region:SL2.40ch05:2404490..2408988+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00004379g0013.1 protein AED:0.06 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|333; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=2e-70) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=1e-71) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc01g098720.2.1 (e_value=9e-166) genomic_reference:SL2.40ch01 gene_region:80910735-80912501 transcript_region:SL2.40ch01:80910735..80912501+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MJZ9_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00004379g0017.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|105; (*TAIR) AT3G26210.1 (e_value=6e-13) | Symbols: CYP71B23 | cytochrome P450, family 71, subfamily B, polypeptide 23 | chr3:9593329-9595202 REVERSE LENGTH=501;; (*ITAG) Solyc02g092250.2.1 (e_value=9e-22) genomic_reference:SL2.40ch02 gene_region:47971232-47973318 transcript_region:SL2.40ch02:47971232..47973318- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004379g0009.1 protein AED:0.47 eAED:0.62 QI:0|0|0|1|1|1|2|0|81; (*ITAG) Solyc02g092250.2.1 (e_value=8e-16) genomic_reference:SL2.40ch02 gene_region:47971232-47973318 transcript_region:SL2.40ch02:47971232..47973318- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004379g0014.1 protein AED:0.44 eAED:0.66 QI:0|0|0|1|0|0.4|5|0|255; (*ITAG) Solyc02g092250.2.1 (e_value=3e-23) genomic_reference:SL2.40ch02 gene_region:47971232-47973318 transcript_region:SL2.40ch02:47971232..47973318- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004379g0015.1 protein AED:0.52 eAED:0.71 QI:0|0|0|1|0.25|0.4|5|0|204; (*ITAG) Solyc02g092250.2.1 (e_value=9e-43) genomic_reference:SL2.40ch02 gene_region:47971232-47973318 transcript_region:SL2.40ch02:47971232..47973318- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004379g0016.1 protein AED:0.50 eAED:0.71 QI:0|0|0|1|0|0|2|0|110; (*ITAG) Solyc02g092250.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:47971232-47973318 transcript_region:SL2.40ch02:47971232..47973318- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00056669g0006.1 protein AED:0.08 eAED:0.08 QI:167|1|1|1|1|1|5|1743|252; (*SWP) sp|B5FXN8|THOC4_TAEGU (e_value=4e-36) THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1;; (*TAIR) AT5G59950.5 (e_value=2e-70) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:24140235-24141504 FORWARD LENGTH=245;; (*ITAG) Solyc11g073280.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53371249-53374473 transcript_region:SL2.40ch11:53371249..53374473+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- C1N7F4_MICPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00056669g0007.1 protein AED:0.34 eAED:0.34 QI:0|1|0.77|1|0.75|0.66|9|0|309; (*TAIR) AT5G59960.1 (e_value=2e-169) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24142352-24145140 REVERSE LENGTH=359;; (*ITAG) Solyc11g073300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53376607-53382033 transcript_region:SL2.40ch11:53376607..53382033- functional_description:"Genomic DNA chromosome 5 P1 clone MMN10 (AHRD V1 ***- Q9FJE0_ARATH)"; NbS00017572g0020.1 protein AED:0.13 eAED:0.18 QI:0|0|0|0.66|0.5|0.66|3|0|252; (*TAIR) AT1G12030.1 (e_value=7e-21) | Symbols: | Protein of unknown function (DUF506) | chr1:4064751-4066319 REVERSE LENGTH=295;; (*ITAG) Solyc11g012120.1.1 (e_value=1e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5041281-5042288 transcript_region:SL2.40ch11:5041281..5042288- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00017572g0021.1 protein AED:0.19 eAED:0.19 QI:0|0.82|0.77|1|0.70|0.72|18|360|390; (*SWP) sp|P19595|UGPA_SOLTU (e_value=0.0) UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3;; (*TAIR) AT3G03250.1 (e_value=0.0) | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE 1 | chr3:749761-754014 REVERSE LENGTH=469;; (*ITAG) Solyc05g054060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63182024-63189388 transcript_region:SL2.40ch05:63182024..63189388- go_terms:GO:0003983,GO:0042802 functional_description:"UTP-glucose 1 phosphate uridylyltransferase (AHRD V1 **** B3VDY8_EUCGR); contains Interpro domain(s) IPR016267 UTP--glucose-1-phosphate uridylyltransferase, subgroup "; GO:0003983,GO:0042802 NbS00017572g0002.1 protein AED:0.31 eAED:0.37 QI:0|0|0|1|1|1|3|0|159; (*SWP) sp|Q07346|DCE_PETHY (e_value=2e-43) Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1;; (*TAIR) AT2G02010.1 (e_value=3e-38) | Symbols: GAD4 | glutamate decarboxylase 4 | chr2:474375-476495 REVERSE LENGTH=493;; (*ITAG) Solyc05g054050.2.1 (e_value=2e-50) genomic_reference:SL2.40ch05 gene_region:63173933-63177785 transcript_region:SL2.40ch05:63173933..63177785- go_terms:GO:0004351,GO:0005516 functional_description:"Glutamate decarboxylase (AHRD V1 **** Q8LKR4_TOBAC); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0004351,GO:0005516 NbS00017572g0023.1 protein AED:0.39 eAED:0.43 QI:15|0|0|1|0|0.5|2|0|84; (*SWP) sp|Q07346|DCE_PETHY (e_value=5e-41) Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1;; (*TAIR) AT5G17330.1 (e_value=7e-41) | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502;; (*ITAG) Solyc05g054050.2.1 (e_value=3e-44) genomic_reference:SL2.40ch05 gene_region:63173933-63177785 transcript_region:SL2.40ch05:63173933..63177785- go_terms:GO:0004351,GO:0005516 functional_description:"Glutamate decarboxylase (AHRD V1 **** Q8LKR4_TOBAC); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0004351,GO:0005516 NbS00017572g0018.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|229; (*SWP) sp|P34091|RL6_MESCR (e_value=4e-107) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1;; (*TAIR) AT1G74050.1 (e_value=1e-100) | Symbols: | Ribosomal protein L6 family protein | chr1:27847256-27848680 REVERSE LENGTH=233;; (*ITAG) Solyc05g054070.2.1 (e_value=3e-119) genomic_reference:SL2.40ch05 gene_region:63196547-63198365 transcript_region:SL2.40ch05:63196547..63198365- go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E "; GO:0003735,GO:0003723 NbS00017572g0025.1 protein AED:0.06 eAED:0.06 QI:68|0.66|0.5|1|0.33|0.25|4|0|417; (*SWP) sp|Q700D2|JKD_ARATH (e_value=7e-63) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT2G01940.1 (e_value=1e-94) | Symbols: SGR5, ATIDD15 | C2H2-like zinc finger protein | chr2:432652-434917 FORWARD LENGTH=445;; (*ITAG) Solyc05g054030.2.1 (e_value=9e-153) genomic_reference:SL2.40ch05 gene_region:63157458-63160584 transcript_region:SL2.40ch05:63157458..63160584+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU3_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00017572g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|250; (*SWP) sp|Q6L3X3|R1B8_SOLDE (e_value=5e-16) Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1;; (*ITAG) Solyc05g044490.2.1 (e_value=7e-65) genomic_reference:SL2.40ch05 gene_region:55767048-55771482 transcript_region:SL2.40ch05:55767048..55771482+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00056302g0003.1 protein AED:0.08 eAED:0.09 QI:0|1|0|1|1|1|2|0|397; (*ITAG) Solyc03g059470.1.1 (e_value=1e-92) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:27167843-27169033 transcript_region:SL2.40ch03:27167843..27169033- functional_description:"F1C9.9 protein (AHRD V1 ***- Q9SGB0_ARATH)"; NbS00040444g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|146; (*SWP) sp|P14009|14KD_DAUCA (e_value=8e-22) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62510.1 (e_value=2e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr1:23136632-23137081 REVERSE LENGTH=149;; (*ITAG) Solyc12g014620.1.1 (e_value=2e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5627530-5627901 transcript_region:SL2.40ch12:5627530..5627901- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00040444g0003.1 protein AED:0.62 eAED:1.00 QI:8|0|0|0.5|1|1|2|133|26 NbS00018849g0015.1 protein AED:0.42 eAED:0.72 QI:0|0|0|1|1|1|2|0|124 NbS00018849g0053.1 protein AED:0.20 eAED:0.25 QI:0|0|0|1|0|0.14|7|0|365; (*SWP) sp|P93311|RM02_ARATH (e_value=9e-99) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*TAIR) AT2G07715.1 (e_value=1e-115) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:3411180-3412694 FORWARD LENGTH=389;; (*ITAG) Solyc00g022110.2.1 (e_value=5e-132) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00018849g0039.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|1|0.66|3|0|111; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=7e-18) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=5e-19) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=4e-27) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00018849g0047.1 protein AED:0.32 eAED:0.32 QI:10|0.5|0.33|1|0|0|3|0|203; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-141) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-135) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=4e-143) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00018849g0012.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|154; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=3e-45) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=9e-44) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-47) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00018849g0003.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|99; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-52) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=7e-50) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=9e-55) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00018849g0052.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|128; (*ITAG) Solyc00g020010.1.1 (e_value=5e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806787-11807014 transcript_region:SL2.40ch00:11806787..11807014- functional_description:"Unknown Protein (AHRD V1)"; NbS00018849g0029.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.5|1|1|4|0|194; (*SWP) sp|P93312|YMF16_ARATH (e_value=1e-19) Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2;; (*ITAG) ATMG00570.1 (e_value=2e-22) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc05g023970.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:30154180-30154559 transcript_region:SL2.40ch05:30154180..30154559+ functional_description:"Transport membrane protein (Fragment) (AHRD V1 **-- D7RMX4_SILLA)"; NbS00018849g0034.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|66 NbS00018849g0043.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|4|0|425; (*SWP) sp|O05000|NU2M_ARATH (e_value=7e-79) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=7e-81) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g125990.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00018849g0045.1 protein AED:0.41 eAED:0.53 QI:0|0|0|1|0|0|5|0|226; (*SWP) sp|P15688|NU2M_BETVU (e_value=2e-25) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2;; (*ITAG) ATMG01320.1 (e_value=5e-17) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g013120.2.1 (e_value=2e-31) genomic_reference:SL2.40ch00 gene_region:10672277-10673169 transcript_region:SL2.40ch00:10672277..10673169- functional_description:"Uncharacterized mitochondrial protein AtMg01330 (AHRD V1 *-*- M1330_ARATH)"; NbS00018849g0054.1 protein AED:0.40 eAED:0.43 QI:0|0|0|1|0|0|2|0|130; (*ITAG) Solyc00g022100.1.1 (e_value=3e-69) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00018849g0049.1 protein AED:0.40 eAED:0.96 QI:0|0|0|1|0|0|3|0|121 NbS00018849g0051.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0|0|2|0|112 NbS00018849g0044.1 protein AED:0.46 eAED:0.59 QI:0|0|0|1|0|0|2|0|97; (*SWP) sp|P93401|NU2M_OENBE (e_value=6e-19) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=7e-20) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g244290.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00028613g0004.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0|0|5|0|226; (*ITAG) Solyc12g098590.1.1 (e_value=9e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64387594-64389640 transcript_region:SL2.40ch12:64387594..64389640+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI42_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbC26144103g0001.1 protein AED:0.00 eAED:0.00 QI:191|1|1|1|0|0|2|0|46 NbS00021365g0004.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|262; (*ITAG) Solyc03g007720.2.1 (e_value=3e-45) genomic_reference:SL2.40ch03 gene_region:2250500-2251571 transcript_region:SL2.40ch03:2250500..2251571- functional_description:"Unknown Protein (AHRD V1)"; NbS00021500g0008.1 protein AED:0.21 eAED:0.21 QI:129|1|1|1|1|1|3|155|249; (*SWP) sp|O24030|PSA7_SOLLC (e_value=3e-160) Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1;; (*TAIR) AT3G51260.1 (e_value=2e-152) | Symbols: PAD1 | 20S proteasome alpha subunit PAD1 | chr3:19031086-19032746 FORWARD LENGTH=250;; (*ITAG) Solyc01g111450.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:89446679-89449724 transcript_region:SL2.40ch01:89446679..89449724+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT8_SOLTU); contains Interpro domain(s) IPR000426 Proteasome, alpha-subunit, conserved site "; GO:0019773,GO:0005839 NbS00041877g0001.1 protein AED:0.21 eAED:0.50 QI:363|0|0|0.66|1|1|3|0|164; (*ITAG) Solyc01g109730.1.1 (e_value=2e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024172g0023.1 protein AED:0.17 eAED:0.17 QI:6|0.66|0.25|1|0.33|0.75|4|0|195; (*SWP) sp|Q9AWM9|RPF2_ORYSJ (e_value=4e-85) Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1;; (*TAIR) AT3G23620.1 (e_value=1e-75) | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:8480147-8481873 FORWARD LENGTH=314;; (*ITAG) Solyc10g083600.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62706418-62710849 transcript_region:SL2.40ch10:62706418..62710849+ go_terms:GO:0008097 functional_description:"Ribosome production factor 2 homolog (AHRD V1 **-- RPF2_ORYSJ); contains Interpro domain(s) IPR007109 Brix domain "; GO:0008097 NbS00024172g0021.1 protein AED:0.20 eAED:0.20 QI:330|0.53|0.5|1|0.73|0.68|16|0|804; (*SWP) sp|Q05609|CTR1_ARATH (e_value=0.0) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=0.0) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc10g083610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024172g0026.1 protein AED:0.29 eAED:0.31 QI:0|0|0|0.4|0.75|0.6|5|0|354; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=6e-18) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=5e-19) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020981g0005.1 protein AED:0.14 eAED:0.14 QI:57|1|0.66|1|0.5|0.66|3|0|222; (*SWP) sp|Q9FTA0|GEML4_ARATH (e_value=5e-62) GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1;; (*TAIR) AT5G08350.1 (e_value=4e-63) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:2686417-2687175 REVERSE LENGTH=222;; (*ITAG) Solyc04g008960.2.1 (e_value=2e-112) genomic_reference:SL2.40ch04 gene_region:2559465-2560652 transcript_region:SL2.40ch04:2559465..2560652+ functional_description:"FIP1 (AHRD V1 **-- B6U778_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00010579g0017.1 protein AED:0.20 eAED:0.21 QI:0|0.75|0.4|1|1|1|5|0|1031; (*SWP) sp|O82302|P2C29_ARATH (e_value=8e-149) Protein phosphatase 2C 29 OS=Arabidopsis thaliana GN=PLL1 PE=1 SV=2;; (*TAIR) AT2G35350.1 (e_value=6e-150) | Symbols: PLL1 | poltergeist like 1 | chr2:14881360-14884116 REVERSE LENGTH=783;; (*ITAG) Solyc08g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1576129-1582322 transcript_region:SL2.40ch08:1576129..1582322+ go_terms:GO:0004722,GO:0005543 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-** B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0005543 NbS00010579g0015.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|486; (*SWP) sp|Q9LQK7|AB7I_ARATH (e_value=0.0) Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1;; (*TAIR) AT1G32500.1 (e_value=0.0) | Symbols: ATNAP6, NAP6 | non-intrinsic ABC protein 6 | chr1:11750091-11751994 REVERSE LENGTH=475;; (*ITAG) Solyc08g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1582945-1588341 transcript_region:SL2.40ch08:1582945..1588341- go_terms:GO:0005515,GO:0005215 functional_description:"FeS assembly protein SufD (AHRD V1 ***- Q3MG34_ANAVT); contains Interpro domain(s) IPR011542 SUF system FeS cluster assembly, SufD "; GO:0005515,GO:0005215 NbS00010579g0020.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|729; (*SWP) sp|Q8RX22|MIP1_ARATH (e_value=3e-174) MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1;; (*TAIR) AT2G35330.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr2:14869179-14871673 FORWARD LENGTH=738;; (*ITAG) Solyc08g006980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1555009-1559443 transcript_region:SL2.40ch08:1555009..1559443+ go_terms:GO:0005515 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- B0XJ37_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515 NbS00010579g0008.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|1|1|3|0|197; (*SWP) sp|O49696|ALMTC_ARATH (e_value=2e-51) Aluminum-activated malate transporter 12 OS=Arabidopsis thaliana GN=ALMT12 PE=2 SV=1;; (*TAIR) AT4G17970.1 (e_value=1e-52) | Symbols: ALMT12, ATALMT12 | aluminum-activated, malate transporter 12 | chr4:9975482-9977722 FORWARD LENGTH=560;; (*ITAG) Solyc08g006990.1.1 (e_value=8e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1562856-1567169 transcript_region:SL2.40ch08:1562856..1567169+ go_terms:GO:0008509 functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--* C6EP55_SECCE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0008509 NbS00034371g0001.1 protein AED:0.19 eAED:0.24 QI:0|0|0|1|1|1|2|0|374; (*ITAG) Solyc10g081340.1.1 (e_value=2e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61767413-61768894 transcript_region:SL2.40ch10:61767413..61768894+ functional_description:"Protein PHYTOCHROME KINASE SUBSTRATE 4 (AHRD V1 ***- PKS4_ARATH)"; NbS00001635g0015.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|4|124|153; (*SWP) sp|Q945M1|NDUB9_ARATH (e_value=1e-56) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=2 SV=1;; (*TAIR) AT4G34700.1 (e_value=9e-58) | Symbols: CIB22, AtCIB22 | LYR family of Fe/S cluster biogenesis protein | chr4:16556874-16558362 FORWARD LENGTH=117;; (*ITAG) Solyc01g110390.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:88860841-88872420 transcript_region:SL2.40ch01:88860841..88872420+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB9_MOUSE); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0005515,GO:0008137 NbS00001635g0020.1 protein AED:0.07 eAED:0.07 QI:0|0.4|0.33|1|0.8|0.5|6|0|371; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc01g110360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88844597-88847246 transcript_region:SL2.40ch01:88844597..88847246+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B0FPD8_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00001635g0017.1 protein AED:0.12 eAED:0.12 QI:3954|1|0.33|1|1|1|3|0|281; (*SWP) sp|Q04832|HEXP_LEIMA (e_value=6e-24) DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1;; (*TAIR) AT1G75560.2 (e_value=8e-88) | Symbols: | zinc knuckle (CCHC-type) family protein | chr1:28371420-28372717 REVERSE LENGTH=257;; (*ITAG) Solyc10g054330.1.1 (e_value=6e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50729498-50732695 transcript_region:SL2.40ch10:50729498..50732695+ go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 **-- B6T3W5_MAIZE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00001635g0018.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.25|1|1|1|4|514|441; (*SWP) sp|Q69IL4|RF2A_ORYSJ (e_value=7e-39) Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=5e-139) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc01g110480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88940597-88943622 transcript_region:SL2.40ch01:88940597..88943622+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 *-*- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00001635g0010.1 protein AED:0.44 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|160; (*TAIR) AT4G38900.1 (e_value=2e-12) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=553;; (*ITAG) Solyc01g110480.2.1 (e_value=7e-49) genomic_reference:SL2.40ch01 gene_region:88940597-88943622 transcript_region:SL2.40ch01:88940597..88943622+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 *-*- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00004895g0002.1 protein AED:0.09 eAED:0.09 QI:0|1|0.83|1|0|0|6|1507|838; (*SWP) sp|Q9LIE7|PP246_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1;; (*TAIR) AT3G22150.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:7813028-7815490 FORWARD LENGTH=820;; (*ITAG) Solyc11g017370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8241534-8244041 transcript_region:SL2.40ch11:8241534..8244041- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1K9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009421g0019.1 protein AED:0.16 eAED:0.16 QI:119|1|0.33|1|1|1|3|0|196; (*SWP) sp|P62371|SYH_LEPIC (e_value=8e-16) Histidine--tRNA ligase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=hisS PE=3 SV=1;; (*TAIR) AT5G03406.1 (e_value=4e-38) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr5:839966-841444 FORWARD LENGTH=263;; (*ITAG) Solyc03g119280.2.1 (e_value=2e-50) genomic_reference:SL2.40ch03 gene_region:61963971-61972631 transcript_region:SL2.40ch03:61963971..61972631- go_terms:GO:0003879,GO:0030234 functional_description:"Histidyl-tRNA synthetase 1 (AHRD V1 ***- D7LWN6_ARALY); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0003879,GO:0030234 NbS00009421g0007.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.66|0.83|1|1|6|214|245; (*SWP) sp|B1ZUW6|SYH_OPITP (e_value=3e-26) Histidine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hisS PE=3 SV=1;; (*TAIR) AT3G46100.1 (e_value=9e-103) | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486;; (*ITAG) Solyc03g119280.2.1 (e_value=2e-132) genomic_reference:SL2.40ch03 gene_region:61963971-61972631 transcript_region:SL2.40ch03:61963971..61972631- go_terms:GO:0003879,GO:0030234 functional_description:"Histidyl-tRNA synthetase 1 (AHRD V1 ***- D7LWN6_ARALY); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0003879,GO:0030234 NbS00009421g0026.1 protein AED:0.13 eAED:0.14 QI:192|0.87|0.76|1|0.37|0.58|17|0|1222; (*SWP) sp|O14099|YERG_SCHPO (e_value=2e-62) Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=2 SV=1;; (*TAIR) AT3G18290.1 (e_value=0.0) | Symbols: EMB2454, BTS | zinc finger protein-related | chr3:6274308-6280174 FORWARD LENGTH=1254;; (*ITAG) Solyc03g119300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61996468-62009300 transcript_region:SL2.40ch03:61996468..62009300+ go_terms:GO:0004872,GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0004872,GO:0008270 NbS00009421g0022.1 protein AED:0.27 eAED:0.28 QI:6|0.81|0.83|1|0.90|0.91|12|243|744; (*SWP) sp|Q5R6Y0|HBS1L_PONAB (e_value=7e-125) HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1;; (*TAIR) AT5G10630.1 (e_value=0.0) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr5:3360561-3364414 FORWARD LENGTH=667;; (*ITAG) Solyc03g119290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61984210-61994404 transcript_region:SL2.40ch03:61984210..61994404+ go_terms:GO:0003747 functional_description:"Elongation factor 1-alpha (AHRD V1 **** D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0003747 NbS00009421g0008.1 protein AED:0.87 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|79 NbS00025906g0010.1 protein AED:0.11 eAED:0.11 QI:260|1|1|1|0.87|0.77|9|352|686; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=0.0) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc12g007110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1549690-1553261 transcript_region:SL2.40ch12:1549690..1553261+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00025906g0009.1 protein AED:0.20 eAED:0.21 QI:80|0.83|0.71|1|1|1|7|0|452; (*SWP) sp|O22025|CFXQ_CYAME (e_value=2e-39) Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2;; (*TAIR) AT3G24530.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945678-8947786 REVERSE LENGTH=481;; (*ITAG) Solyc12g007100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1537587-1541140 transcript_region:SL2.40ch12:1537587..1541140- go_terms:GO:0030506 functional_description:"Ankyrin repeat domain-containing protein 1 (AHRD V1 *--* ANKR1_CHICK); contains Interpro domain(s) IPR000641 CbxX/CfqX "; GO:0030506 NbS00000864g0003.1 protein AED:0.00 eAED:0.00 QI:22|-1|0|1|-1|1|1|0|112 NbS00000864g0008.1 protein AED:0.11 eAED:0.11 QI:220|1|1|1|0.6|0.5|6|341|461; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=7e-79) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=3e-109) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc10g086060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64348811-64350952 transcript_region:SL2.40ch10:64348811..64350952- functional_description:"IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00000864g0007.1 protein AED:0.45 eAED:0.49 QI:0|0|0|1|1|1|3|0|99 NbS00012408g0020.1 protein AED:0.55 eAED:0.67 QI:0|0|0|1|0.75|0.4|5|0|177; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=2e-27) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.3 (e_value=9e-29) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19410118-19413961 REVERSE LENGTH=794;; (*ITAG) Solyc03g120910.2.1 (e_value=2e-31) genomic_reference:SL2.40ch03 gene_region:63195847-63202781 transcript_region:SL2.40ch03:63195847..63202781+ go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00012408g0001.1 protein AED:0.19 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|401; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=1e-32) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT5G59550.1 (e_value=3e-72) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:23998422-23999645 REVERSE LENGTH=407;; (*ITAG) Solyc04g011610.1.1 (e_value=4e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00012408g0021.1 protein AED:0.12 eAED:0.24 QI:0|0.66|0.42|1|1|0.85|7|0|441; (*SWP) sp|Q8LPL5|FZR3_ARATH (e_value=9e-153) Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1;; (*TAIR) AT5G13840.2 (e_value=7e-154) | Symbols: FZR3 | FIZZY-related 3 | chr5:4468677-4470706 REVERSE LENGTH=481;; (*ITAG) Solyc06g043150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:26107234-26109682 transcript_region:SL2.40ch06:26107234..26109682- go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q6T2Z5_SOYBN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00012408g0006.1 protein AED:0.23 eAED:0.30 QI:0|0|0|1|1|1|3|0|337; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=2e-32) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT2G39710.1 (e_value=1e-154) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:16562051-16563379 REVERSE LENGTH=442;; (*ITAG) Solyc02g065050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:30745377-30746666 transcript_region:SL2.40ch02:30745377..30746666- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00030636g0003.1 protein AED:0.14 eAED:0.49 QI:231|0|0.5|1|1|1|2|0|336; (*TAIR) AT2G27660.1 (e_value=5e-42) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc01g073890.2.1 (e_value=4e-92) genomic_reference:SL2.40ch01 gene_region:70464108-70465600 transcript_region:SL2.40ch01:70464108..70465600+ go_terms:GO:0019992,GO:0020037 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FJG5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0019992,GO:0020037 NbS00050150g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|267; (*SWP) sp|Q9LQM3|C3H12_ARATH (e_value=8e-88) Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1;; (*TAIR) AT1G32360.1 (e_value=6e-89) | Symbols: | Zinc finger (CCCH-type) family protein | chr1:11673325-11675162 FORWARD LENGTH=384;; (*ITAG) Solyc06g072720.2.1 (e_value=5e-133) genomic_reference:SL2.40ch06 gene_region:41239040-41242945 transcript_region:SL2.40ch06:41239040..41242945- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 56 (AHRD V1 ***- C3H56_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00041417g0007.1 protein AED:0.27 eAED:0.40 QI:18|0|0|1|1|0.5|2|0|308; (*SWP) sp|P52427|PSA4_SPIOL (e_value=5e-160) Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1;; (*TAIR) AT3G22110.1 (e_value=9e-160) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=7e-162) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00041417g0001.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|1|1|2|0|203; (*SWP) sp|Q8LQ36|ATX3_ORYSJ (e_value=2e-77) Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1;; (*TAIR) AT3G54130.1 (e_value=4e-70) | Symbols: | Josephin family protein | chr3:20042895-20044429 REVERSE LENGTH=280;; (*ITAG) Solyc10g086770.1.1 (e_value=4e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64816627-64817491 transcript_region:SL2.40ch10:64816627..64817491- functional_description:"Ataxin 3 variant ref (Fragment) (AHRD V1 *-*- D3VVG8_HUMAN); contains Interpro domain(s) IPR006155 Machado-Joseph disease protein MJD "; NbS00005182g0016.1 protein AED:0.30 eAED:0.48 QI:0|0|0|0.6|0.25|0.4|5|0|226; (*SWP) sp|Q2L907|PSAA_GOSHI (e_value=8e-48) Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium hirsutum GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=3e-48) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00005182g0020.1 protein AED:0.51 eAED:0.64 QI:0|0|0|0.75|0|0.25|4|0|195; (*SWP) sp|Q0ZJ03|PSBE_VITVI (e_value=4e-37) Cytochrome b559 subunit alpha OS=Vitis vinifera GN=psbE PE=3 SV=1;; (*ITAG) ATCG00580.1 (e_value=3e-38) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00005182g0018.1 protein AED:0.13 eAED:0.22 QI:0|0|0|1|0|0|4|0|279; (*SWP) sp|P10582|DPOM_MAIZE (e_value=3e-23) DNA polymerase OS=Zea mays PE=3 SV=1; NbS00005182g0017.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|3|0|120; (*SWP) sp|P92514|COX3_ARATH (e_value=3e-22) Cytochrome c oxidase subunit 3 OS=Arabidopsis thaliana GN=COX3 PE=2 SV=2;; (*ITAG) ATMG00730.1 (e_value=3e-23) | Symbols: COX3 | cytochrome c oxidase subunit 3 | chrM:218280-219077 FORWARD LENGTH=265; NbS00005182g0019.1 protein AED:0.74 eAED:1.00 QI:0|0|0|1|0|0|2|0|83 NbS00011622g0011.1 protein AED:0.14 eAED:0.16 QI:325|1|0.9|1|0.88|0.9|10|0|666; (*SWP) sp|Q39128|KAT1_ARATH (e_value=0.0) Potassium channel KAT1 OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2;; (*TAIR) AT5G46240.1 (e_value=0.0) | Symbols: KAT1 | potassium channel in Arabidopsis thaliana 1 | chr5:18743652-18746561 REVERSE LENGTH=677;; (*ITAG) Solyc02g070530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34839156-34842287 transcript_region:SL2.40ch02:34839156..34842287- go_terms:GO:0042802 functional_description:"Potassium channel (AHRD V1 ***- O24382_SOLTU); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0042802 NbS00011622g0010.1 protein AED:0.34 eAED:0.34 QI:187|1|0.88|1|1|1|9|286|237; (*SWP) sp|Q9M4T8|PSA5_SOYBN (e_value=4e-166) Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1;; (*TAIR) AT3G14290.1 (e_value=4e-164) | Symbols: PAE2 | 20S proteasome alpha subunit E2 | chr3:4764364-4766381 FORWARD LENGTH=237;; (*ITAG) Solyc02g070510.2.1 (e_value=2e-171) genomic_reference:SL2.40ch02 gene_region:34815271-34822336 transcript_region:SL2.40ch02:34815271..34822336+ go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6TGU2_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00002584g0006.1 protein AED:0.15 eAED:0.15 QI:180|1|1|1|0.33|0.25|4|649|244; (*ITAG) Solyc05g053360.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:62622554-62625670 transcript_region:SL2.40ch05:62622554..62625670- functional_description:"Unknown Protein (AHRD V1)"; NbS00002584g0004.1 protein AED:0.41 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|66 NbS00002584g0003.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.33|1|1|3|0|226 NbS00002584g0102.1 protein AED:0.71 eAED:0.78 QI:0|0|0|0.5|1|1|4|0|68 NbS00002584g0210.1 protein AED:0.24 eAED:0.27 QI:0|0|0|0.8|0.25|0.6|5|0|251 NbC25946057g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|105; (*SWP) sp|Q9FNC9|TO222_ARATH (e_value=1e-26) Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3;; (*TAIR) AT5G43970.1 (e_value=8e-28) | Symbols: TOM22-V, TOM9-2, ATTOM22-V | translocase of outer membrane 22-V | chr5:17692888-17693187 FORWARD LENGTH=99;; (*ITAG) Solyc03g005700.1.1 (e_value=7e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:500219-500521 transcript_region:SL2.40ch03:500219..500521- go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM22 (AHRD V1 ***- B6U2X6_MAIZE)"; GO:0015450 NbS00031729g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.54|1|0.7|0.63|11|100|1365; (*SWP) sp|Q9M1C7|AB9C_ARATH (e_value=0.0) ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2;; (*TAIR) AT3G60160.1 (e_value=0.0) | Symbols: ATMRP9, MRP9, ABCC9 | multidrug resistance-associated protein 9 | chr3:22223829-22229195 REVERSE LENGTH=1506;; (*ITAG) Solyc10g024420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13997548-14004636 transcript_region:SL2.40ch10:13997548..14004636- go_terms:GO:0015431 functional_description:"ABC transporter C family member 9 (AHRD V1 **-- AB9C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00031729g0003.1 protein AED:0.31 eAED:0.31 QI:230|1|0.5|1|0|0.5|2|0|241; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=3e-19) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G58110.2 (e_value=5e-24) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=6e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00031729g0002.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|95; (*TAIR) AT1G58110.2 (e_value=5e-16) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00026224g0012.1 protein AED:0.07 eAED:0.07 QI:599|0.66|0.75|0.93|0.8|0.75|16|204|610; (*SWP) sp|Q10137|SEC14_SCHPO (e_value=1e-41) Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=2 SV=1;; (*TAIR) AT3G24840.1 (e_value=4e-169) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr3:9067301-9070256 FORWARD LENGTH=579;; (*ITAG) Solyc09g060090.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53165275-53173182 transcript_region:SL2.40ch09:53165275..53173182- go_terms:GO:0005622 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7KN07_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00026224g0017.1 protein AED:0.07 eAED:0.07 QI:292|0.88|0.77|1|0.76|0.88|18|0|1219; (*SWP) sp|Q8CHI8|EP400_MOUSE (e_value=8e-12) E1A-binding protein p400 OS=Mus musculus GN=Ep400 PE=1 SV=3;; (*TAIR) AT3G24880.1 (e_value=0.0) | Symbols: | Helicase/SANT-associated, DNA binding protein | chr3:9086457-9095537 REVERSE LENGTH=1957;; (*ITAG) Solyc09g060080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53116687-53137092 transcript_region:SL2.40ch09:53116687..53137092+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00026224g0016.1 protein AED:0.20 eAED:0.36 QI:343|0.6|0.33|0.83|0.8|0.83|6|0|686; (*TAIR) AT3G24870.1 (e_value=1e-68) | Symbols: | Helicase/SANT-associated, DNA binding protein | chr3:9075237-9084278 REVERSE LENGTH=1907;; (*ITAG) Solyc09g060080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53116687-53137092 transcript_region:SL2.40ch09:53116687..53137092+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00017503g0008.1 protein AED:0.22 eAED:0.22 QI:186|0.88|0.88|1|0.8|0.92|26|219|997; (*SWP) sp|A6W7R2|DDL_KINRD (e_value=2e-24) D-alanine--D-alanine ligase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ddl PE=3 SV=1;; (*TAIR) AT3G08840.2 (e_value=0.0) | Symbols: | D-alanine--D-alanine ligase family | chr3:2679648-2686157 REVERSE LENGTH=937;; (*ITAG) Solyc10g085390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63913446-63922066 transcript_region:SL2.40ch10:63913446..63922066- go_terms:GO:0005524,GO:0005618,GO:0009252 functional_description:"D-alanine--D-alanine ligase family (AHRD V1 ***- D7L782_ARALY); contains Interpro domain(s) IPR013817 Pre-ATP-grasp fold "; GO:0005524,GO:0005618,GO:0009252 NbC25047921g0002.1 protein AED:0.13 eAED:0.17 QI:15|0|0|1|1|1|2|0|177; (*SWP) sp|O48540|MAN1_SOLLC (e_value=2e-104) Mannan endo-1,4-beta-mannosidase 1 OS=Solanum lycopersicum GN=MAN1 PE=1 SV=2;; (*TAIR) AT5G66460.1 (e_value=2e-50) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc00g231680.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:19653870-19655403 transcript_region:SL2.40ch00:19653870..19655403- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00002909g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.83|0.71|7|421|365; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-63) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50000.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:20342838-20345033 REVERSE LENGTH=385;; (*ITAG) Solyc03g114210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58256826-58261183 transcript_region:SL2.40ch03:58256826..58261183- go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q9FGB1_ARATH); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004708 NbS00002909g0004.1 protein AED:0.27 eAED:0.68 QI:0|0|0|1|1|1|2|0|62 NbS00002909g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.2|0.33|6|0|236; (*SWP) sp|Q9FM10|SWET5_ARATH (e_value=7e-92) Bidirectional sugar transporter SWEET5 OS=Arabidopsis thaliana GN=SWEET5 PE=2 SV=2;; (*TAIR) AT5G62850.1 (e_value=5e-93) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc03g114200.2.1 (e_value=5e-109) genomic_reference:SL2.40ch03 gene_region:58255191-58256564 transcript_region:SL2.40ch03:58255191..58256564+ go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7LPN4_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00009641g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|0|349; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=3e-137) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=2e-138) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc10g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:763795-765374 transcript_region:SL2.40ch10:763795..765374- go_terms:GO:0015271,GO:0015269 functional_description:"Calcium-activated outward-rectifying potassium channel 1 (AHRD V1 **** B6TSL7_MAIZE); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00029894g0004.1 protein AED:0.06 eAED:0.06 QI:567|0|0.5|1|0|0|2|0|372; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=2e-95) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=2e-96) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc02g087040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44158457-44159629 transcript_region:SL2.40ch02:44158457..44159629- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00055999g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.66|0.83|1|0.66|6|0|270; (*TAIR) AT5G39430.1 (e_value=6e-129) | Symbols: | Protein of unknown function (DUF1336) | chr5:15775302-15777599 REVERSE LENGTH=511;; (*ITAG) Solyc03g065200.2.1 (e_value=5e-167) genomic_reference:SL2.40ch03 gene_region:37714532-37720423 transcript_region:SL2.40ch03:37714532..37720423+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 *--- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00012533g0105.1 protein AED:0.63 eAED:0.68 QI:0|0|0|0.2|1|1|5|0|283 NbS00013151g0024.1 protein AED:0.02 eAED:0.02 QI:67|1|1|1|1|1|2|34|667; (*SWP) sp|Q9M9C5|Y1680_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1;; (*TAIR) AT1G68400.1 (e_value=0.0) | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr1:25646401-25648916 REVERSE LENGTH=670;; (*ITAG) Solyc05g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3238520-3242391 transcript_region:SL2.40ch05:3238520..3242391+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00013151g0007.1 protein AED:0.04 eAED:0.04 QI:972|1|0.75|1|0|0.25|4|0|394; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=2e-133) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G25390.1 (e_value=4e-139) | Symbols: | Protein kinase superfamily protein | chr1:8906640-8908800 REVERSE LENGTH=629;; (*ITAG) Solyc05g009010.1.1 (e_value=8e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3184232-3185140 transcript_region:SL2.40ch05:3184232..3185140+ go_terms:GO:0046982,GO:0004674 functional_description:"Serine/threonine protein kinase family protein (AHRD V1 **** C6ZRM5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0046982,GO:0004674 NbS00013151g0023.1 protein AED:0.20 eAED:0.23 QI:0|0.25|0.28|1|0.55|0.38|21|1130|2757; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-160) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=8e-162) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc05g008930.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3141969-3148662 transcript_region:SL2.40ch05:3141969..3148662+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013151g0009.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|340; (*SWP) sp|Q9FID6|Y5392_ARATH (e_value=8e-103) Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1;; (*TAIR) AT1G70250.1 (e_value=4e-104) | Symbols: | receptor serine/threonine kinase, putative | chr1:26452975-26456088 FORWARD LENGTH=799;; (*ITAG) Solyc05g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3204827-3207336 transcript_region:SL2.40ch05:3204827..3207336- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013151g0034.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.5|0.9|1|1|10|0|345; (*SWP) sp|Q54FU9|MCFW_DICDI (e_value=4e-53) Mitochondrial substrate carrier family protein W OS=Dictyostelium discoideum GN=mcfW PE=3 SV=1;; (*TAIR) AT1G25380.1 (e_value=6e-122) | Symbols: ATNDT2, NDT2 | NAD+ transporter 2 | chr1:8903726-8905818 FORWARD LENGTH=363;; (*ITAG) Solyc05g009020.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3185966-3192366 transcript_region:SL2.40ch05:3185966..3192366- go_terms:GO:0051724 functional_description:"Mitochondrial carrier like protein (AHRD V1 ***- Q4A3J5_ARATH); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0051724 NbS00013151g0013.1 protein AED:0.51 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|133; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=4e-15) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G67000.1 (e_value=3e-16) | Symbols: | Protein kinase superfamily protein | chr1:25004217-25007604 REVERSE LENGTH=892;; (*ITAG) Solyc05g009050.2.1 (e_value=8e-27) genomic_reference:SL2.40ch05 gene_region:3208286-3211740 transcript_region:SL2.40ch05:3208286..3211740- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 **** D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00016272g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.81|0.83|1|0.72|0.83|12|211|530; (*SWP) sp|Q43011|ASNS_ORYSJ (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3;; (*TAIR) AT5G10240.1 (e_value=0.0) | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212934-3216418 REVERSE LENGTH=578;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00025776g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|92; (*ITAG) Solyc07g054700.2.1 (e_value=6e-15) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00025776g0004.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.66|1|1|3|0|91; (*TAIR) AT2G28520.1 (e_value=2e-24) | Symbols: VHA-A1 | vacuolar proton ATPase A1 | chr2:12210026-12215532 FORWARD LENGTH=817;; (*ITAG) Solyc06g075400.2.1 (e_value=2e-28) genomic_reference:SL2.40ch06 gene_region:43190253-43198996 transcript_region:SL2.40ch06:43190253..43198996+ go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbS00010930g0011.1 protein AED:0.12 eAED:0.12 QI:52|1|0.93|1|0.73|0.68|16|230|1047; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT3G44730.1 (e_value=0.0) | Symbols: ATKP1, KP1 | kinesin-like protein 1 | chr3:16285888-16290852 FORWARD LENGTH=1087;; (*ITAG) Solyc07g065880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64689631-64698266 transcript_region:SL2.40ch07:64689631..64698266- go_terms:GO:0005576,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005576,GO:0007018 NbS00010930g0013.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|0.8|5|592|282; (*TAIR) AT3G13226.1 (e_value=7e-52) | Symbols: | regulatory protein RecX family protein | chr3:4264442-4266286 REVERSE LENGTH=382;; (*ITAG) Solyc07g065870.2.1 (e_value=1e-145) genomic_reference:SL2.40ch07 gene_region:64685507-64689022 transcript_region:SL2.40ch07:64685507..64689022- go_terms:GO:0006282 functional_description:"Regulatory protein RecX (AHRD V1 *-*- B6TKG2_MAIZE); contains Interpro domain(s) IPR003783 Regulatory protein RecX "; GO:0006282 NbS00010930g0002.1 protein AED:0.19 eAED:0.19 QI:184|0.66|0.71|1|0.5|0.57|7|907|298; (*SWP) sp|Q9C9X3|ANXD5_ARATH (e_value=4e-117) Annexin D5 OS=Arabidopsis thaliana GN=ANN5 PE=2 SV=2;; (*TAIR) AT1G68090.1 (e_value=3e-118) | Symbols: ANNAT5, ANN5 | annexin 5 | chr1:25519442-25520774 REVERSE LENGTH=316;; (*ITAG) Solyc04g078820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61081296-61085434 transcript_region:SL2.40ch04:61081296..61085434+ go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00019041g0010.1 protein AED:0.14 eAED:0.14 QI:178|1|0.66|1|1|1|3|0|133; (*SWP) sp|O22929|BL1S1_ARATH (e_value=5e-47) Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1;; (*TAIR) AT2G30330.1 (e_value=4e-48) | Symbols: BLOS1 | GCN5L1 family protein | chr2:12929045-12929688 REVERSE LENGTH=152;; (*ITAG) Solyc11g068450.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50260524-50262870 transcript_region:SL2.40ch11:50260524..50262870+ functional_description:"Biogenesis of lysosome-related organelles complex-1 subunit 1 (AHRD V1 ***- C3KJU5_ANOFI); contains Interpro domain(s) IPR009395 GCN5-like 1 "; NbS00019041g0012.1 protein AED:0.14 eAED:0.14 QI:85|0.33|0.25|1|0.66|0.5|4|0|380; (*SWP) sp|Q9ZQG9|E1314_ARATH (e_value=9e-158) Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2;; (*TAIR) AT2G27500.2 (e_value=4e-159) | Symbols: | Glycosyl hydrolase superfamily protein | chr2:11752615-11753844 REVERSE LENGTH=377;; (*ITAG) Solyc11g068440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50253546-50256836 transcript_region:SL2.40ch11:50253546..50256836+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00019041g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.5|1|0.33|0.75|4|179|235; (*SWP) sp|Q9ZQH1|CML48_ARATH (e_value=3e-54) Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2;; (*TAIR) AT2G27480.1 (e_value=2e-55) | Symbols: | Calcium-binding EF-hand family protein | chr2:11746811-11747885 FORWARD LENGTH=228;; (*ITAG) Solyc11g068460.1.1 (e_value=9e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50264264-50267585 transcript_region:SL2.40ch11:50264264..50267585- go_terms:GO:0005509 functional_description:"Calpain-2 catalytic subunit (AHRD V1 *--- CAN2_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00029882g0001.1 protein AED:0.13 eAED:0.13 QI:393|1|1|1|0.5|0.57|7|251|253; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=8e-83) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=6e-84) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc06g060590.2.1 (e_value=5e-121) genomic_reference:SL2.40ch06 gene_region:34970975-34975215 transcript_region:SL2.40ch06:34970975..34975215- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7KK13_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00029882g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|200; (*ITAG) Solyc07g041740.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00001944g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|361; (*SWP) sp|O22938|Y2182_ARATH (e_value=1e-16) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT4G18760.1 (e_value=9e-89) | Symbols: AtRLP51, RLP51 | receptor like protein 51 | chr4:10308163-10309458 REVERSE LENGTH=431;; (*ITAG) Solyc02g072250.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36134785-36135969 transcript_region:SL2.40ch02:36134785..36135969+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00038367g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|157; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-15) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=3e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079140.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59955431-59955877 transcript_region:SL2.40ch08:59955431..59955877+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *-*- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00038367g0005.1 protein AED:0.24 eAED:0.24 QI:209|1|0.5|1|0|0|2|0|240; (*SWP) sp|A7YVD7|CH038_BOVIN (e_value=2e-42) UPF0551 protein C8orf38 homolog, mitochondrial OS=Bos taurus PE=2 SV=1;; (*TAIR) AT1G62730.1 (e_value=5e-110) | Symbols: | Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304;; (*ITAG) Solyc08g007440.1.1 (e_value=4e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2005498-2006409 transcript_region:SL2.40ch08:2005498..2006409- go_terms:GO:0009058 functional_description:"Phytoene synthase (AHRD V1 ***- B6TWB6_MAIZE); contains Interpro domain(s) IPR002060 Squalene/phytoene synthase "; GO:0009058 NbS00038367g0003.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|80; (*TAIR) AT1G62730.1 (e_value=1e-26) | Symbols: | Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304;; (*ITAG) Solyc08g007440.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2005498-2006409 transcript_region:SL2.40ch08:2005498..2006409- go_terms:GO:0009058 functional_description:"Phytoene synthase (AHRD V1 ***- B6TWB6_MAIZE); contains Interpro domain(s) IPR002060 Squalene/phytoene synthase "; GO:0009058 NbS00014954g0004.1 protein AED:0.81 eAED:0.84 QI:0|0|0|0.28|0.83|0.85|7|0|213 NbS00000172g0012.1 protein AED:0.23 eAED:0.24 QI:62|0.61|0.57|0.92|0.61|0.71|14|0|596; (*SWP) sp|P98205|ALA2_ARATH (e_value=0.0) Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1;; (*TAIR) AT5G44240.2 (e_value=0.0) | Symbols: ALA2 | aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107;; (*ITAG) Solyc11g017170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:7954305-7991478 transcript_region:SL2.40ch11:7954305..7991478+ go_terms:GO:0005576,GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium transporting ATPase (AHRD V1 ***- A8N6A2_COPC7); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0005576,GO:0016020,GO:0008152,GO:0016021 NbS00000172g0008.1 protein AED:0.09 eAED:0.09 QI:94|0.66|0.75|1|0.33|0|4|260|260; (*SWP) sp|P0C582|M2OM_NEUCR (e_value=7e-53) Putative mitochondrial 2-oxoglutarate/malate carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU04792 PE=3 SV=1;; (*TAIR) AT5G19760.1 (e_value=3e-148) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=2e-168) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00005478g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|0.85|1|1|1|7|440|468; (*TAIR) AT4G14740.2 (e_value=2e-137) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr4:8450567-8453946 REVERSE LENGTH=475;; (*ITAG) Solyc09g082580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63719760-63723497 transcript_region:SL2.40ch09:63719760..63723497+ go_terms:GO:0035091 functional_description:"Os12g0604200 protein (Fragment) (AHRD V1 *-*- Q0IM29_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00027617g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.75|1|1|1|4|645|340; (*TAIR) AT4G32750.1 (e_value=8e-122) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15796415-15798091 REVERSE LENGTH=293;; (*ITAG) Solyc08g068350.2.1 (e_value=5e-167) genomic_reference:SL2.40ch08 gene_region:54652779-54659355 transcript_region:SL2.40ch08:54652779..54659355- functional_description:"Unknown Protein (AHRD V1)"; NbS00028565g0003.1 protein AED:0.11 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|114; (*SWP) sp|Q9SKK8|ATL22_ARATH (e_value=5e-34) RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2;; (*TAIR) AT2G25410.1 (e_value=4e-35) | Symbols: | RING/U-box superfamily protein | chr2:10814470-10815917 FORWARD LENGTH=377;; (*ITAG) Solyc01g095830.2.1 (e_value=4e-51) genomic_reference:SL2.40ch01 gene_region:78753204-78754957 transcript_region:SL2.40ch01:78753204..78754957- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00054590g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.94|0.83|1|0.94|0.88|18|0|649; (*SWP) sp|Q8KPU9|SYR_SYNE7 (e_value=0.0) Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2;; (*TAIR) AT4G26300.1 (e_value=0.0) | Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642;; (*ITAG) Solyc12g008570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1956456-1966721 transcript_region:SL2.40ch12:1956456..1966721+ go_terms:GO:0006420,GO:0005737 functional_description:"Arginyl-tRNA synthetase (AHRD V1 ***- O23247_ARATH); contains Interpro domain(s) IPR001278 Arginyl-tRNA synthetase, class Ic "; GO:0006420,GO:0005737 NbS00007135g0015.1 protein AED:0.34 eAED:0.34 QI:89|0.9|0.80|0.95|0.9|0.85|21|0|887; (*SWP) sp|Q9SCV3|BGAL9_ARATH (e_value=0.0) Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1;; (*TAIR) AT2G32810.1 (e_value=0.0) | Symbols: BGAL9 | beta galactosidase 9 | chr2:13919410-13925325 REVERSE LENGTH=887;; (*ITAG) Solyc09g092160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66653813-66668675 transcript_region:SL2.40ch09:66653813..66668675- go_terms:GO:0004565 functional_description:"Beta-galactosidase (AHRD V1 **** A2JGW9_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565 NbS00007135g0001.1 protein AED:0.39 eAED:0.40 QI:195|0.63|0.66|0.91|1|1|12|0|382; (*SWP) sp|Q54T05|RIO2_DICDI (e_value=5e-81) Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum GN=rio2 PE=3 SV=1;; (*TAIR) AT3G51270.1 (e_value=1e-136) | Symbols: | protein serine/threonine kinases;ATP binding;catalytics | chr3:19033851-19036772 FORWARD LENGTH=461;; (*ITAG) Solyc01g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1663684-1668757 transcript_region:SL2.40ch01:1663684..1668757- go_terms:GO:0004672,GO:0005487 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U6C8_ASPOR); contains Interpro domain(s) IPR000687 RIO kinase "; GO:0004672,GO:0005487 NbS00007135g0010.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.25|1|1|4|0|82; (*SWP) sp|P46300|RS4_SOLTU (e_value=5e-29) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=5e-27) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc06g007360.2.1 (e_value=3e-30) genomic_reference:SL2.40ch06 gene_region:1393218-1395914 transcript_region:SL2.40ch06:1393218..1395914- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00007135g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|105; (*SWP) sp|P05488|RT13_TOBAC (e_value=5e-45) Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2;; (*ITAG) Solyc11g056310.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43097177-43097491 transcript_region:SL2.40ch11:43097177..43097491- go_terms:GO:0003676,GO:0005840 functional_description:"30S ribosomal protein S13 (AHRD V1 ***- D3L425_9BACT); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003676,GO:0005840 NbS00007135g0002.1 protein AED:0.36 eAED:0.37 QI:501|0|0.5|1|0|0.5|2|0|140; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=5e-29) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=4e-30) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc06g036440.1.1 (e_value=6e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22680542-22683163 transcript_region:SL2.40ch06:22680542..22683163+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00007135g0006.1 protein AED:0.41 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|70 NbS00037053g0002.1 protein AED:0.29 eAED:0.36 QI:0|0|0|1|0|0|2|0|67 NbS00052711g0010.1 protein AED:0.17 eAED:0.17 QI:30|0.66|0.57|1|0.83|0.71|7|627|493; (*SWP) sp|Q9C690|BH122_ARATH (e_value=6e-42) Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1;; (*TAIR) AT1G51140.1 (e_value=5e-43) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18943802-18945613 REVERSE LENGTH=379;; (*ITAG) Solyc12g100140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65321959-65324680 transcript_region:SL2.40ch12:65321959..65324680+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00052711g0007.1 protein AED:0.28 eAED:0.28 QI:170|1|1|1|1|1|3|220|227; (*SWP) sp|O23049|RK6_ARATH (e_value=2e-125) 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1;; (*TAIR) AT1G05190.1 (e_value=2e-126) | Symbols: emb2394 | Ribosomal protein L6 family | chr1:1502515-1503738 REVERSE LENGTH=223;; (*ITAG) Solyc12g100160.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65330773-65334942 transcript_region:SL2.40ch12:65330773..65334942+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- B6SL57_MAIZE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00002537g0002.1 protein AED:0.18 eAED:0.18 QI:124|1|1|1|1|1|3|552|102; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=2e-51) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=1e-52) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=1e-55) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00002537g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.71|0.5|1|0.71|0.62|8|970|339; (*TAIR) AT1G54520.1 (e_value=8e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). | chr1:20363565-20365874 FORWARD LENGTH=391;; (*ITAG) Solyc01g097860.2.1 (e_value=4e-157) genomic_reference:SL2.40ch01 gene_region:80316593-80324129 transcript_region:SL2.40ch01:80316593..80324129- functional_description:"Membrane protein (AHRD V1 *-*- A8JG04_CHLRE); contains Interpro domain(s) IPR010903 Protein of unknown function DUF1517 "; NbS00034724g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|281; (*SWP) sp|Q5GHF7|IPT_HUMLU (e_value=2e-102) Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1;; (*TAIR) AT1G68460.1 (e_value=3e-100) | Symbols: ATIPT1, IPT1 | isopentenyltransferase 1 | chr1:25668976-25670049 REVERSE LENGTH=357;; (*ITAG) Solyc04g007240.1.1 (e_value=3e-145) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:942579-943556 transcript_region:SL2.40ch04:942579..943556+ go_terms:GO:0004811,GO:0009824 functional_description:"tRNA dimethylallyltransferase (AHRD V1 **** D6W2X4_YEAST); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0004811,GO:0009824 NbS00028605g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|322; (*SWP) sp|Q9LSW9|ATL16_ARATH (e_value=5e-82) RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1;; (*TAIR) AT5G43420.1 (e_value=4e-83) | Symbols: | RING/U-box superfamily protein | chr5:17451790-17452917 FORWARD LENGTH=375;; (*ITAG) Solyc09g089890.1.1 (e_value=1e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64853281-64854330 transcript_region:SL2.40ch09:64853281..64854330- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00053285g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|268; (*SWP) sp|Q7Y232|U73B4_ARATH (e_value=3e-43) UDP-glycosyltransferase 73B4 OS=Arabidopsis thaliana GN=UGT73B4 PE=2 SV=1;; (*TAIR) AT2G15490.3 (e_value=8e-45) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc12g096080.1.1 (e_value=3e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63491462-63494134 transcript_region:SL2.40ch12:63491462..63494134- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00007907g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|79; (*TAIR) AT2G21820.1 (e_value=3e-31) | Symbols: | unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9302983-9303219 REVERSE LENGTH=78;; (*ITAG) Solyc03g046380.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:16382951-16383193 transcript_region:SL2.40ch03:16382951..16383193+ functional_description:"Seed maturation protein PM41 (AHRD V1 ***- Q9SWB2_SOYBN)"; NbS00007907g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.61|0.92|0.58|0.84|13|0|628; (*SWP) sp|Q9LFS4|NIK1_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1;; (*TAIR) AT5G16000.1 (e_value=0.0) | Symbols: NIK1 | NSP-interacting kinase 1 | chr5:5224264-5227003 FORWARD LENGTH=638;; (*ITAG) Solyc02g089550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45911202-45914547 transcript_region:SL2.40ch02:45911202..45914547- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007388g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|215; (*TAIR) AT1G13360.1 (e_value=1e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc06g069150.1.1 (e_value=5e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39319761-39320498 transcript_region:SL2.40ch06:39319761..39320498+ functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 *-*- Q9LUA5_ARATH)"; NbS00007388g0007.1 protein AED:0.26 eAED:0.41 QI:172|0|0.5|1|1|1|2|0|67 NbS00015167g0014.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.88|0.88|18|478|568; (*SWP) sp|Q94BR4|PR19A_ARATH (e_value=0.0) Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1;; (*TAIR) AT1G04510.1 (e_value=0.0) | Symbols: MAC3A | MOS4-associated complex 3A | chr1:1226749-1230592 FORWARD LENGTH=523;; (*ITAG) Solyc09g090660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65460983-65469080 transcript_region:SL2.40ch09:65460983..65469080+ go_terms:GO:0042802 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042802 NbS00015167g0020.1 protein AED:0.30 eAED:0.36 QI:0|0|0.5|1|0|0|2|0|289; (*SWP) sp|Q6NM73|CRR3_ARATH (e_value=8e-81) Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1;; (*TAIR) AT1G04520.1 (e_value=6e-82) | Symbols: PDLP2 | plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307;; (*ITAG) Solyc09g090680.2.1 (e_value=2e-121) genomic_reference:SL2.40ch09 gene_region:65477278-65479423 transcript_region:SL2.40ch09:65477278..65479423+ go_terms:GO:0030001 functional_description:"Cysteine-rich repeat secretory protein 3 (AHRD V1 ***- CRR3_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0030001 NbS00015167g0017.1 protein AED:0.27 eAED:0.25 QI:206|0.90|0.90|1|0.76|0.81|22|501|501; (*SWP) sp|P54243|G6PI_OENME (e_value=0.0) Glucose-6-phosphate isomerase, cytosolic OS=Oenothera mexicana GN=PGIC PE=3 SV=1;; (*TAIR) AT5G42740.1 (e_value=0.0) | Symbols: | Sugar isomerase (SIS) family protein | chr5:17136080-17140622 FORWARD LENGTH=560;; (*ITAG) Solyc12g014380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5260573-5274052 transcript_region:SL2.40ch12:5260573..5274052+ go_terms:GO:0004347 functional_description:"Glucose-6-phosphate isomerase 1"; GO:0004347 NbS00015167g0023.1 protein AED:0.29 eAED:0.29 QI:59|0.75|0.6|0.8|0.5|0.8|5|0|423; (*TAIR) AT4G13330.1 (e_value=5e-157) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:7754248-7755837 REVERSE LENGTH=428;; (*ITAG) Solyc09g090690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65487436-65490341 transcript_region:SL2.40ch09:65487436..65490341- functional_description:"Unknown Protein (AHRD V1)"; NbS00015167g0005.1 protein AED:0.27 eAED:0.30 QI:0|1|0.85|1|0.66|0.57|7|417|234; (*SWP) sp|Q8N573|OXR1_HUMAN (e_value=2e-13) Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2;; (*TAIR) AT2G05590.1 (e_value=3e-63) | Symbols: | TLD-domain containing nucleolar protein | chr2:2067196-2068650 FORWARD LENGTH=263;; (*ITAG) Solyc09g090670.2.1 (e_value=6e-130) genomic_reference:SL2.40ch09 gene_region:65469158-65473532 transcript_region:SL2.40ch09:65469158..65473532- functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00061216g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|179; (*SWP) sp|P11670|PRB1_TOBAC (e_value=3e-109) Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT4G33720.1 (e_value=6e-69) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163;; (*ITAG) Solyc01g106620.2.1 (e_value=7e-119) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00004514g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|164; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=4e-11) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G66910.1 (e_value=4e-13) | Symbols: | Protein kinase superfamily protein | chr1:24961634-24963941 REVERSE LENGTH=666;; (*ITAG) Solyc02g086290.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43569613-43570455 transcript_region:SL2.40ch02:43569613..43570455- functional_description:"Receptor serine/threonine kinase (AHRD V1 ***- Q9FF31_ARATH)"; NbS00009681g0008.1 protein AED:0.15 eAED:0.29 QI:0|0.5|0|1|0.5|0.66|3|0|326; (*TAIR) AT1G73380.1 (e_value=2e-23) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:27589100-27590657 FORWARD LENGTH=434;; (*ITAG) Solyc03g019930.2.1 (e_value=8e-98) genomic_reference:SL2.40ch03 gene_region:6806299-6809434 transcript_region:SL2.40ch03:6806299..6809434- functional_description:"UPF0415 protein C7orf25 homolog (AHRD V1 *-*- CG025_DANRE); contains Interpro domain(s) IPR010733 Protein of unknown function DUF1308 "; NbS00009681g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|259; (*TAIR) AT1G54540.1 (e_value=3e-63) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:20367702-20368421 REVERSE LENGTH=239;; (*ITAG) Solyc03g019920.1.1 (e_value=9e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:6805210-6805953 transcript_region:SL2.40ch03:6805210..6805953+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00009681g0007.1 protein AED:0.08 eAED:0.08 QI:289|1|1|1|0.83|0.71|7|334|239; (*TAIR) AT4G39630.1 (e_value=4e-64) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18397749-18399263 REVERSE LENGTH=233;; (*ITAG) Solyc03g019910.2.1 (e_value=1e-128) genomic_reference:SL2.40ch03 gene_region:6801923-6805520 transcript_region:SL2.40ch03:6801923..6805520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020018g0001.1 protein AED:0.25 eAED:0.57 QI:0|0|0|1|0|0|2|0|153 NbS00025466g0018.1 protein AED:0.16 eAED:0.19 QI:0|0.28|0.12|0.75|0.57|0.5|8|0|1682; (*SWP) sp|O75376|NCOR1_HUMAN (e_value=3e-15) Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2;; (*TAIR) AT3G52250.1 (e_value=5e-108) | Symbols: | Duplicated homeodomain-like superfamily protein | chr3:19376629-19383100 FORWARD LENGTH=1656;; (*ITAG) Solyc04g049120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38848674-38858241 transcript_region:SL2.40ch04:38848674..38858241+ go_terms:GO:0003677 functional_description:"Nuclear receptor corepressor 2 (AHRD V1 *-*- Q19LF0_PIG); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00025466g0019.1 protein AED:0.12 eAED:0.12 QI:80|0.75|0.88|1|0.62|0.66|9|759|255; (*SWP) sp|Q0DST9|PUS5_ORYSJ (e_value=3e-42) RNA pseudourine synthase 5 OS=Oryza sativa subsp. japonica GN=Os03g0288500 PE=2 SV=2;; (*TAIR) AT3G52260.1 (e_value=1e-44) | Symbols: | Pseudouridine synthase family protein | chr3:19383983-19386440 REVERSE LENGTH=294;; (*ITAG) Solyc02g062520.2.1 (e_value=7e-71) genomic_reference:SL2.40ch02 gene_region:28782992-28794373 transcript_region:SL2.40ch02:28782992..28794373- go_terms:GO:0009451 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7LU41_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451 NbS00025466g0021.1 protein AED:0.31 eAED:0.31 QI:0|1|0.33|1|1|0.66|3|0|353; (*TAIR) AT4G25030.2 (e_value=2e-135) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344;; (*ITAG) Solyc08g075860.2.1 (e_value=4e-131) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"; NbS00025466g0003.1 protein AED:0.37 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|170; (*TAIR) AT1G67660.3 (e_value=4e-40) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:25364065-25365069 FORWARD LENGTH=334;; (*ITAG) Solyc10g081050.1.1 (e_value=4e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00025466g0020.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|2|0|239; (*TAIR) AT1G67660.2 (e_value=9e-75) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:25364152-25365069 FORWARD LENGTH=305;; (*ITAG) Solyc10g081050.1.1 (e_value=5e-112) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00026273g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.63|0.66|0.83|0.72|0.83|12|738|590; (*SWP) sp|P93648|LONM_MAIZE (e_value=0.0) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=0.0) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13247058-13273748 transcript_region:SL2.40ch10:13247058..13273748+ go_terms:GO:0008236 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR004815 Peptidase S16, ATP-dependent protease La "; GO:0008236 NbS00026273g0014.1 protein AED:0.23 eAED:0.23 QI:0|1|0.33|1|1|0.66|3|0|87; (*SWP) sp|P93648|LONM_MAIZE (e_value=1e-44) Lon protease homolog, mitochondrial OS=Zea mays GN=LON2 PE=1 SV=1;; (*TAIR) AT5G26860.1 (e_value=4e-44) | Symbols: LON_ARA_ARA, LON1 | lon protease 1 | chr5:9451183-9456631 FORWARD LENGTH=940;; (*ITAG) Solyc10g024310.1.1 (e_value=4e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13244617-13246336 transcript_region:SL2.40ch10:13244617..13246336+ go_terms:GO:0006508 functional_description:"Lon protease homolog (AHRD V1 ***- B9I6Z6_POPTR); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00026273g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|123; (*SWP) sp|Q9LKR3|HSP7K_ARATH (e_value=6e-44) Heat shock 70 kDa protein 11 OS=Arabidopsis thaliana GN=HSP70-11 PE=1 SV=1;; (*TAIR) AT5G28540.1 (e_value=5e-45) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc01g099660.2.1 (e_value=5e-54) genomic_reference:SL2.40ch01 gene_region:81599813-81602924 transcript_region:SL2.40ch01:81599813..81602924+ go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00026273g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|82; (*SWP) sp|Q42434|BIP_SPIOL (e_value=2e-19) Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1;; (*TAIR) AT5G42020.1 (e_value=9e-17) | Symbols: BIP, BIP2 | Heat shock protein 70 (Hsp 70) family protein | chr5:16807697-16810480 REVERSE LENGTH=668;; (*ITAG) Solyc01g099660.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:81599813-81602924 transcript_region:SL2.40ch01:81599813..81602924+ go_terms:GO:0005524 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00026273g0010.1 protein AED:0.16 eAED:0.16 QI:24|0|0|1|0|0|2|0|100; (*TAIR) AT1G56420.1 (e_value=2e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21122772-21124234 REVERSE LENGTH=183;; (*ITAG) Solyc02g085920.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:43273017-43276340 transcript_region:SL2.40ch02:43273017..43276340- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q00YZ4_OSTTA)"; NbS00004541g0005.1 protein AED:0.26 eAED:0.26 QI:242|0.87|0.77|1|0.87|0.77|9|276|264; (*SWP) sp|Q6DJ03|MEMO1_XENTR (e_value=7e-81) Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1;; (*TAIR) AT2G25280.1 (e_value=4e-142) | Symbols: | CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). | chr2:10762639-10764631 REVERSE LENGTH=291;; (*ITAG) Solyc08g029110.2.1 (e_value=4e-165) genomic_reference:SL2.40ch08 gene_region:22666640-22676056 transcript_region:SL2.40ch08:22666640..22676056- go_terms:GO:0005515 functional_description:"DUF52 domain-containing protein (AHRD V1 **-- C5FFY6_NANOT); contains Interpro domain(s) IPR002737 UPF0103/Mediator of ErbB2-driven cell motility (Memo), related "; GO:0005515 NbS00011182g0010.1 protein AED:0.05 eAED:0.06 QI:0|1|0|1|1|1|3|0|405; (*ITAG) Solyc01g097490.1.1 (e_value=1e-132) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:80081666-80082520 transcript_region:SL2.40ch01:80081666..80082520+ functional_description:"IQ calmodulin-binding motif family protein (AHRD V1 ***- B6SSD5_MAIZE)"; NbS00011182g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|282; (*SWP) sp|Q9ZU38|RPIA_ARATH (e_value=6e-74) Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1;; (*TAIR) AT3G04790.1 (e_value=2e-104) | Symbols: | Ribose 5-phosphate isomerase, type A protein | chr3:1313365-1314195 FORWARD LENGTH=276;; (*ITAG) Solyc01g097460.2.1 (e_value=1e-145) genomic_reference:SL2.40ch01 gene_region:80067637-80074843 transcript_region:SL2.40ch01:80067637..80074843+ go_terms:GO:0009052 functional_description:"Ribose-5-phosphate isomerase (AHRD V1 ***- A8IRQ1_CHLRE); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0009052 NbS00011182g0018.1 protein AED:0.40 eAED:0.40 QI:112|0.85|0.75|0.87|0.71|0.62|8|0|153; (*SWP) sp|Q9SQZ9|PITH1_ARATH (e_value=1e-96) PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2;; (*TAIR) AT3G04780.1 (e_value=8e-98) | Symbols: | Protein of unknown function (DUF1000) | chr3:1311447-1313013 REVERSE LENGTH=176;; (*ITAG) Solyc01g097450.2.1 (e_value=4e-97) genomic_reference:SL2.40ch01 gene_region:80067623-80073617 transcript_region:SL2.40ch01:80067623..80073617+ go_terms:GO:0015035 functional_description:"Thioredoxin-like protein 1 (AHRD V1 ***- B6SHZ5_MAIZE); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0015035 NbS00011182g0016.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.5|1|0|0|4|26|124; (*TAIR) AT4G14746.1 (e_value=6e-19) | Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212;; (*ITAG) Solyc01g097470.2.1 (e_value=7e-36) genomic_reference:SL2.40ch01 gene_region:80076944-80078611 transcript_region:SL2.40ch01:80076944..80078611- functional_description:"Neurogenic locus notch protein-like (AHRD V1 ***- B6SSE6_MAIZE)"; NbS00011182g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.83|0.61|0.92|1|1|13|0|616; (*SWP) sp|Q9SLI2|NEK1_ARATH (e_value=0.0) Serine/threonine-protein kinase Nek1 OS=Arabidopsis thaliana GN=NEK1 PE=2 SV=2;; (*TAIR) AT1G54510.3 (e_value=0.0) | Symbols: NEK1 | NIMA-related serine/threonine kinase 1 | chr1:20358603-20362006 REVERSE LENGTH=612;; (*ITAG) Solyc01g097500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80082833-80094266 transcript_region:SL2.40ch01:80082833..80094266- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00047277g0006.1 protein AED:0.01 eAED:0.01 QI:283|1|0.5|1|1|1|2|0|351; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=1e-36) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT1G58470.1 (e_value=2e-67) | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | chr1:21727374-21728539 FORWARD LENGTH=360;; (*ITAG) Solyc04g077520.2.1 (e_value=2e-161) genomic_reference:SL2.40ch04 gene_region:60070423-60072137 transcript_region:SL2.40ch04:60070423..60072137- go_terms:GO:0003730 functional_description:"RNA binding protein (AHRD V1 **-* Q9C652_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003730 NbS00047277g0007.1 protein AED:0.32 eAED:0.33 QI:84|1|0.75|1|1|1|4|0|272; (*TAIR) AT1G44920.1 (e_value=7e-84) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3054 (InterPro:IPR021414); Has 246 Blast hits to 246 proteins in 119 species: Archae - 14; Bacteria - 181; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:16983229-16984408 REVERSE LENGTH=258;; (*ITAG) Solyc04g077500.2.1 (e_value=1e-138) genomic_reference:SL2.40ch04 gene_region:60037203-60044123 transcript_region:SL2.40ch04:60037203..60044123- functional_description:"Os03g0729100 protein (Fragment) (AHRD V1 ***- Q0DNX2_ORYSJ)"; NbS00002498g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.87|1|0.71|0.87|8|320|339; (*SWP) sp|O24361|PSB5_SPIOL (e_value=8e-170) Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G26340.1 (e_value=3e-169) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:9650600-9652572 REVERSE LENGTH=273;; (*ITAG) Solyc05g056160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00033689g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.66|0.75|4|0|307; (*SWP) sp|O23044|PER3_ARATH (e_value=2e-117) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=1e-118) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=2e-161) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00033689g0006.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|4|0|217; (*SWP) sp|Q9LXG3|PER56_ARATH (e_value=1e-36) Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1;; (*TAIR) AT5G15180.1 (e_value=8e-38) | Symbols: | Peroxidase superfamily protein | chr5:4930561-4932211 FORWARD LENGTH=329;; (*ITAG) Solyc12g005790.1.1 (e_value=4e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:440801-442920 transcript_region:SL2.40ch12:440801..442920- go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00041291g0008.1 protein AED:0.12 eAED:0.12 QI:18|1|0.71|1|0.83|0.57|7|0|303; (*SWP) sp|Q9NPC3|CIP1_HUMAN (e_value=2e-15) E3 ubiquitin-protein ligase CCNB1IP1 OS=Homo sapiens GN=CCNB1IP1 PE=1 SV=1;; (*TAIR) AT1G53490.1 (e_value=2e-158) | Symbols: | RING/U-box superfamily protein | chr1:19965146-19966811 FORWARD LENGTH=304;; (*ITAG) Solyc08g015770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:5481552-5484910 transcript_region:SL2.40ch08:5481552..5484910- functional_description:"E3 ubiquitin-protein ligase CCNB1IP1 (AHRD V1 *--- CIP1_HUMAN)"; NbS00018040g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|150; (*SWP) sp|P29527|OLEO6_GOSHI (e_value=1e-22) Oleosin 18.2 kDa OS=Gossypium hirsutum GN=MATP6-A PE=2 SV=1;; (*TAIR) AT5G40420.1 (e_value=8e-23) | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173622-16174740 REVERSE LENGTH=199;; (*ITAG) Solyc03g112440.1.1 (e_value=2e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56898083-56898544 transcript_region:SL2.40ch03:56898083..56898544+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- O04925_SESIN); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00018040g0009.1 protein AED:0.24 eAED:0.28 QI:263|0.4|0.66|1|0.8|0.83|6|698|402; (*TAIR) AT5G63040.1 (e_value=6e-106) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25288504-25290326 FORWARD LENGTH=366;; (*ITAG) Solyc04g079740.2.1 (e_value=3e-40) genomic_reference:SL2.40ch04 gene_region:61693248-61696082 transcript_region:SL2.40ch04:61693248..61696082+ functional_description:"Os01g0704200 protein (Fragment) (AHRD V1 *-*- Q0JK10_ORYSJ)"; NbS00018040g0002.1 protein AED:0.44 eAED:0.95 QI:62|0|0.5|1|0|0.5|2|0|217; (*SWP) sp|Q9Y227|ENTP4_HUMAN (e_value=1e-23) Ectonucleoside triphosphate diphosphohydrolase 4 OS=Homo sapiens GN=ENTPD4 PE=1 SV=1;; (*TAIR) AT4G19180.1 (e_value=4e-37) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr4:10485518-10487868 REVERSE LENGTH=740;; (*ITAG) Solyc05g052490.2.1 (e_value=3e-38) genomic_reference:SL2.40ch05 gene_region:61845448-61849046 transcript_region:SL2.40ch05:61845448..61849046- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 *--- Q6DC46_DANRE); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00018227g0001.1 protein AED:0.29 eAED:0.30 QI:0|1|0.5|1|0|0|2|79|406; (*SWP) sp|Q5M807|RNF5_RAT (e_value=3e-16) E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1;; (*TAIR) AT2G44410.1 (e_value=7e-46) | Symbols: | RING/U-box superfamily protein | chr2:18328873-18330114 FORWARD LENGTH=413;; (*ITAG) Solyc06g051230.2.1 (e_value=1e-99) genomic_reference:SL2.40ch06 gene_region:30924444-30926046 transcript_region:SL2.40ch06:30924444..30926046+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 *-*- B6TI40_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00018227g0005.1 protein AED:0.29 eAED:0.29 QI:294|0|0.33|0.66|1|1|3|0|273; (*SWP) sp|Q69XQ3|C3H44_ORYSJ (e_value=4e-56) Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=1e-44) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc01g073940.2.1 (e_value=2e-115) genomic_reference:SL2.40ch01 gene_region:70522512-70526312 transcript_region:SL2.40ch01:70522512..70526312- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003700 NbS00015140g0023.1 protein AED:0.31 eAED:0.31 QI:0|0.81|0.70|0.94|0.81|0.76|17|0|907; (*SWP) sp|F4JMJ1|HSP7R_ARATH (e_value=0.0) Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1;; (*TAIR) AT4G16660.1 (e_value=0.0) | Symbols: | heat shock protein 70 (Hsp 70) family protein | chr4:9377225-9381232 FORWARD LENGTH=867;; (*ITAG) Solyc07g043560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54781149-54789496 transcript_region:SL2.40ch07:54781149..54789496- go_terms:GO:0005515 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005515 NbS00015140g0022.1 protein AED:0.08 eAED:0.09 QI:1059|0.85|0.87|1|1|1|8|283|227; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=2e-146) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=2e-147) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc07g043550.2.1 (e_value=9e-167) genomic_reference:SL2.40ch07 gene_region:54777932-54780376 transcript_region:SL2.40ch07:54777932..54780376+ go_terms:GO:0050373,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** A6LK35_THEM4); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0050373,GO:0042803 NbS00015140g0026.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.33|0.88|0.75|0.66|9|0|300; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=3e-137) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT1G06690.1 (e_value=2e-138) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:2049742-2052039 REVERSE LENGTH=377;; (*ITAG) Solyc07g043570.2.1 (e_value=6e-162) genomic_reference:SL2.40ch07 gene_region:54807979-54814690 transcript_region:SL2.40ch07:54807979..54814690+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KG57_ARALY); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00015140g0024.1 protein AED:0.23 eAED:0.23 QI:294|0.9|0.81|1|0.6|0.54|11|641|462; (*SWP) sp|Q8W2F3|PIF4_ARATH (e_value=2e-45) Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1;; (*TAIR) AT2G43010.2 (e_value=3e-48) | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428;; (*ITAG) Solyc07g043580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54826883-54829837 transcript_region:SL2.40ch07:54826883..54829837+ go_terms:GO:0005515,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00015140g0025.1 protein AED:0.30 eAED:0.30 QI:0|1|0.8|1|0.88|0.9|10|0|367; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=0.0) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT1G06690.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:2049742-2052039 REVERSE LENGTH=377;; (*ITAG) Solyc07g043570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54807979-54814690 transcript_region:SL2.40ch07:54807979..54814690+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KG57_ARALY); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00003297g0005.1 protein AED:0.16 eAED:0.17 QI:146|1|0.86|1|1|1|15|0|822; (*SWP) sp|Q7KKH3|SDA1_DROME (e_value=4e-96) Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1;; (*TAIR) AT1G13160.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:4484634-4488388 FORWARD LENGTH=804;; (*ITAG) Solyc12g099890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65178512-65183874 transcript_region:SL2.40ch12:65178512..65183874- functional_description:"SDA1 family protein (AHRD V1 ***- D7KQC5_ARALY); contains Interpro domain(s) IPR007949 SDA1 "; NbS00003297g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.25|1|1|4|0|259; (*TAIR) AT4G12560.2 (e_value=3e-11) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g005480.2.1 (e_value=7e-38) genomic_reference:SL2.40ch09 gene_region:332487-334110 transcript_region:SL2.40ch09:332487..334110- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009991g0003.1 protein AED:0.37 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|223; (*TAIR) AT5G20700.1 (e_value=6e-26) | Symbols: | Protein of unknown function (DUF581) | chr5:7006178-7007003 REVERSE LENGTH=248;; (*ITAG) Solyc07g017220.2.1 (e_value=8e-115) genomic_reference:SL2.40ch07 gene_region:6515317-6518394 transcript_region:SL2.40ch07:6515317..6518394- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00009991g0103.1 protein AED:0.19 eAED:0.19 QI:132|1|1|1|0.85|0.87|8|575|236 NbS00024663g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|0|0.33|3|0|583; (*TAIR) AT2G37730.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00024663g0004.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|127; (*ITAG) Solyc09g011100.1.1 (e_value=3e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4428078-4428527 transcript_region:SL2.40ch09:4428078..4428527+ functional_description:"Self-incompatibility protein (Fragment) (AHRD V1 -**- C7FE99_9MAGN); contains Interpro domain(s) IPR010264 Plant self-incompatibility S1 "; NbS00022433g0009.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.8|1|0.25|0.2|5|1723|104; (*TAIR) AT3G04650.1 (e_value=2e-27) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:1262017-1264343 FORWARD LENGTH=486;; (*ITAG) Solyc01g097160.2.1 (e_value=8e-43) genomic_reference:SL2.40ch01 gene_region:79868250-79874975 transcript_region:SL2.40ch01:79868250..79874975+ go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B7G7N7_PHATR); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00008149g0008.1 protein AED:0.13 eAED:0.13 QI:221|1|1|1|0.75|0.8|5|347|219; (*SWP) sp|Q4R4P3|CYBP_MACFA (e_value=2e-27) Calcyclin-binding protein OS=Macaca fascicularis GN=CACYBP PE=2 SV=1;; (*TAIR) AT1G30070.1 (e_value=3e-105) | Symbols: | SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=222;; (*ITAG) Solyc08g016670.2.1 (e_value=2e-140) genomic_reference:SL2.40ch08 gene_region:8356898-8360520 transcript_region:SL2.40ch08:8356898..8360520+ go_terms:GO:0042803 functional_description:"Calcyclin-binding protein (AHRD V1 ***- B4FGY0_MAIZE); contains Interpro domain(s) IPR007699 SGS "; GO:0042803 NbS00008149g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|78; (*TAIR) AT2G34585.1 (e_value=5e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14568227-14568472 REVERSE LENGTH=81;; (*ITAG) Solyc02g070470.1.1 (e_value=1e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34792055-34792288 transcript_region:SL2.40ch02:34792055..34792288- functional_description:"Unknown Protein (AHRD V1)"; NbS00009379g0009.1 protein AED:0.37 eAED:0.38 QI:0|0.83|0.71|1|1|1|7|0|316; (*TAIR) AT5G27560.1 (e_value=1e-55) | Symbols: | Domain of unknown function (DUF1995) | chr5:9731758-9733644 FORWARD LENGTH=341;; (*ITAG) Solyc01g098990.2.1 (e_value=4e-79) genomic_reference:SL2.40ch01 gene_region:81105285-81111003 transcript_region:SL2.40ch01:81105285..81111003+ functional_description:"Os06g0146300 protein (Fragment) (AHRD V1 ***- Q0DEL6_ORYSJ); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00009379g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|680; (*SWP) sp|Q9MA85|PP215_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2;; (*TAIR) AT3G05340.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1524071-1526047 REVERSE LENGTH=658;; (*ITAG) Solyc01g099000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81111149-81113152 transcript_region:SL2.40ch01:81111149..81113152- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3T5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00009379g0013.1 protein AED:0.06 eAED:0.06 QI:249|1|0.5|1|1|1|2|0|82; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=2e-23) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT5G03980.1 (e_value=6e-24) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc00g098560.2.1 (e_value=8e-43) genomic_reference:SL2.40ch00 gene_region:15691035-15692244 transcript_region:SL2.40ch00:15691035..15692244+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g03980 (AHRD V1 **** GDL74_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00009379g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|227; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=5e-43) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28590.1 (e_value=1e-39) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc01g099050.2.1 (e_value=1e-98) genomic_reference:SL2.40ch01 gene_region:81149642-81151267 transcript_region:SL2.40ch01:81149642..81151267- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00009379g0015.1 protein AED:0.19 eAED:0.19 QI:117|1|1|1|0.9|0.90|11|457|970; (*SWP) sp|Q5H7P5|EBM_LILLO (e_value=0.0) Mannosylglycoprotein endo-beta-mannosidase OS=Lilium longiflorum GN=EBM PE=1 SV=4;; (*TAIR) AT1G09010.1 (e_value=0.0) | Symbols: | glycoside hydrolase family 2 protein | chr1:2895259-2899287 REVERSE LENGTH=944;; (*ITAG) Solyc01g099090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81163488-81171555 transcript_region:SL2.40ch01:81163488..81171555- go_terms:GO:0005975 functional_description:"Beta-mannosidase (AHRD V1 ***- D7IJR3_9BACE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00008387g0001.1 protein AED:0.09 eAED:0.09 QI:279|0.5|0.66|1|0|0.33|3|0|488; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=2e-176) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=1e-177) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc10g083480.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62586400-62588141 transcript_region:SL2.40ch10:62586400..62588141- functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008387g0011.1 protein AED:0.12 eAED:0.12 QI:0|1|0.75|1|1|1|4|0|172; (*SWP) sp|Q9XH43|CET2_TOBAC (e_value=7e-92) CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1;; (*TAIR) AT5G03840.1 (e_value=3e-92) | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:1024760-1025796 REVERSE LENGTH=177;; (*ITAG) Solyc09g009560.1.1 (e_value=9e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2968569-2971135 transcript_region:SL2.40ch09:2968569..2971135+ go_terms:GO:0008429 functional_description:"SELF PRUNING 9D"; GO:0008429 NbS00008387g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|107; (*TAIR) AT3G52790.1 (e_value=8e-35) | Symbols: | peptidoglycan-binding LysM domain-containing protein | chr3:19566004-19566333 REVERSE LENGTH=109;; (*ITAG) Solyc10g083410.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62558105-62558422 transcript_region:SL2.40ch10:62558105..62558422- go_terms:GO:0016998 functional_description:"Peptidoglycan-binding LysM domain-containing protein (AHRD V1 ***- D7LUB2_ARALY); contains Interpro domain(s) IPR018392 Peptidoglycan-binding lysin domain "; GO:0016998 NbS00008387g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|443; (*SWP) sp|Q43641|UFOG_SOLME (e_value=0.0) Anthocyanidin 3-O-glucosyltransferase OS=Solanum melongena GN=GT PE=2 SV=1;; (*TAIR) AT5G17050.1 (e_value=4e-148) | Symbols: UGT78D2 | UDP-glucosyl transferase 78D2 | chr5:5607828-5609392 REVERSE LENGTH=460;; (*ITAG) Solyc10g083440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62568900-62570243 transcript_region:SL2.40ch10:62568900..62570243+ go_terms:GO:0080043 functional_description:"UDP flavonoid 3-O-glucosyltransferase (Fragment) (AHRD V1 **** B5AIT4_IPOTF); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00058275g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0.33|3|0|953; (*SWP) sp|O23052|Y1515_ARATH (e_value=0.0) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=0.0) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbC25200960g0002.1 protein AED:0.04 eAED:0.04 QI:123|1|1|1|1|1|2|137|75; (*ITAG) Solyc07g054060.2.1 (e_value=4e-17) genomic_reference:SL2.40ch07 gene_region:59779016-59780307 transcript_region:SL2.40ch07:59779016..59780307+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031257g0004.1 protein AED:0.11 eAED:0.12 QI:117|1|0.66|1|1|1|3|0|351; (*SWP) sp|P81392|MYB06_ANTMA (e_value=2e-108) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT3G47600.1 (e_value=8e-100) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333;; (*ITAG) Solyc03g116100.2.1 (e_value=3e-135) genomic_reference:SL2.40ch03 gene_region:59662688-59664351 transcript_region:SL2.40ch03:59662688..59664351- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q6R036_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00031257g0110.1 protein AED:0.18 eAED:0.18 QI:171|1|0.8|1|0.88|0.9|10|0|567 NbS00031257g0111.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|0|0|4|0|370 NbS00017307g0006.1 protein AED:0.12 eAED:0.12 QI:838|1|1|1|0.8|0.87|16|485|772; (*SWP) sp|Q6NQ79|ARID4_ARATH (e_value=0.0) AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana GN=ARID4 PE=2 SV=1;; (*TAIR) AT3G43240.1 (e_value=0.0) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr3:15210032-15214440 REVERSE LENGTH=747;; (*ITAG) Solyc12g049570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46653181-46660991 transcript_region:SL2.40ch12:46653181..46660991- go_terms:GO:0008270,GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (Fragment) (AHRD V1 **-- A9TE17_PHYPA); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0008270,GO:0005622 NbS00035629g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.45|1|0.5|0.54|11|0|470; (*SWP) sp|Q02440|MYO5A_CHICK (e_value=4e-61) Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1;; (*TAIR) AT3G19960.1 (e_value=0.0) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc02g020910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:11008922-11043707 transcript_region:SL2.40ch02:11008922..11043707+ go_terms:GO:0060001 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00035629g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|99; (*TAIR) AT3G19960.1 (e_value=1e-51) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc02g020910.2.1 (e_value=7e-60) genomic_reference:SL2.40ch02 gene_region:11008922-11043707 transcript_region:SL2.40ch02:11008922..11043707+ go_terms:GO:0060001 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00056939g0001.1 protein AED:0.04 eAED:0.04 QI:70|1|1|1|0.75|0.6|5|333|315; (*SWP) sp|Q9T072|BH025_ARATH (e_value=6e-42) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=4e-43) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091810.1.1 (e_value=4e-122) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:47604420-47608160 transcript_region:SL2.40ch02:47604420..47608160+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00030233g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.75|1|1|4|0|458; (*SWP) sp|Q39202|RLK1_ARATH (e_value=8e-35) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=2e-30) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006530.1.1 (e_value=7e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1104611-1107028 transcript_region:SL2.40ch01:1104611..1107028+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00030233g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.71|1|0.66|0.85|7|257|583; (*SWP) sp|Q86HW6|Y6461_DICDI (e_value=2e-47) Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461 PE=3 SV=1;; (*TAIR) AT2G32850.2 (e_value=2e-162) | Symbols: | Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=670;; (*ITAG) Solyc01g074010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70578697-70582804 transcript_region:SL2.40ch01:70578697..70582804- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- C0NU81_AJECG); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00030233g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|131; (*SWP) sp|Q39202|RLK1_ARATH (e_value=9e-44) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=5e-45) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006530.1.1 (e_value=9e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1104611-1107028 transcript_region:SL2.40ch01:1104611..1107028+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00030233g0010.1 protein AED:0.45 eAED:0.52 QI:0|0|0|1|0.5|0.33|3|0|138; (*SWP) sp|Q54VV7|Y0111_DICDI (e_value=1e-15) Probable serine/threonine-protein kinase DDB_G0280111 OS=Dictyostelium discoideum GN=DDB_G0280111 PE=3 SV=1;; (*TAIR) AT2G32850.2 (e_value=1e-48) | Symbols: | Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=670;; (*ITAG) Solyc01g074010.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:70578697-70582804 transcript_region:SL2.40ch01:70578697..70582804- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- C0NU81_AJECG); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010454g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|333; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT5G66570.1 (e_value=0.0) | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PS II oxygen-evolving complex 1 | chr5:26568744-26570124 FORWARD LENGTH=332;; (*ITAG) Solyc02g090030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46276521-46278207 transcript_region:SL2.40ch02:46276521..46278207- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266 NbS00007106g0007.1 protein AED:0.00 eAED:0.00 QI:109|1|1|1|1|1|2|263|240; (*TAIR) AT2G27140.1 (e_value=2e-24) | Symbols: | HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224;; (*ITAG) Solyc11g071560.1.1 (e_value=4e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52067705-52069143 transcript_region:SL2.40ch11:52067705..52069143- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K216_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00053789g0005.1 protein AED:0.28 eAED:0.28 QI:30|0.5|0|0.66|1|1|3|0|103; (*SWP) sp|Q9C1W5|TIM16_SCHPO (e_value=7e-14) Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=2 SV=1;; (*TAIR) AT3G59280.1 (e_value=6e-48) | Symbols: TXR1 | Protein Transporter, Pam16 | chr3:21909266-21910519 REVERSE LENGTH=116;; (*ITAG) Solyc06g068820.2.1 (e_value=5e-66) genomic_reference:SL2.40ch06 gene_region:39033285-39037520 transcript_region:SL2.40ch06:39033285..39037520+ go_terms:GO:0019904,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit TIM16 (AHRD V1 ***- B6UGA4_MAIZE); contains Interpro domain(s) IPR005341 Protein Transporter, Pam16 "; GO:0019904,GO:0015450 NbS00009165g0003.1 protein AED:0.09 eAED:0.09 QI:382|1|0.5|1|1|1|2|0|442; (*SWP) sp|O64682|PID_ARATH (e_value=0.0) Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1;; (*TAIR) AT2G34650.1 (e_value=0.0) | Symbols: PID, ABR | Protein kinase superfamily protein | chr2:14589934-14591557 REVERSE LENGTH=438;; (*ITAG) Solyc12g006690.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1152815-1155108 transcript_region:SL2.40ch12:1152815..1155108- go_terms:GO:0004676 functional_description:"Kinase family protein (AHRD V1 **** D7LER6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004676 NbS00008468g0011.1 protein AED:0.28 eAED:0.31 QI:0|0.68|0.4|0.95|0.73|0.65|20|0|776; (*SWP) sp|Q9C757|INT2_ARATH (e_value=3e-14) Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1;; (*TAIR) AT1G30220.1 (e_value=3e-15) | Symbols: ATINT2, INT2 | inositol transporter 2 | chr1:10632957-10635439 REVERSE LENGTH=580;; (*ITAG) Solyc04g051160.1.1 (e_value=7e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00031171g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|1|1|6|0|525; (*SWP) sp|Q9FPS3|UBP24_ARATH (e_value=4e-161) Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1;; (*TAIR) AT4G30890.3 (e_value=3e-162) | Symbols: UBP24 | ubiquitin-specific protease 24 | chr4:15036383-15038825 REVERSE LENGTH=551;; (*ITAG) Solyc11g065210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47642992-47649719 transcript_region:SL2.40ch11:47642992..47649719+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9DGE6_ARATH); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00020970g0009.1 protein AED:0.33 eAED:0.33 QI:161|1|0.85|1|1|1|7|0|554; (*SWP) sp|P47924|RIBBA_ARATH (e_value=0.0) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G64300.1 (e_value=0.0) | Symbols: ATGCH, GCH, ATRIBA1, RFD1 | GTP cyclohydrolase II | chr5:25718459-25720790 FORWARD LENGTH=543;; (*ITAG) Solyc01g105560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85458577-85463185 transcript_region:SL2.40ch01:85458577..85463185+ go_terms:GO:0009231 functional_description:"3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 ***- D7CLR6_SYNLT); contains Interpro domain(s) IPR000422 DHBP synthase RibB "; GO:0009231 NbS00020970g0017.1 protein AED:0.32 eAED:0.36 QI:92|0.86|0.81|0.93|0.66|0.62|16|0|466; (*SWP) sp|Q6NRM6|MCM9_XENLA (e_value=8e-158) DNA replication licensing factor MCM9 OS=Xenopus laevis GN=mcm9 PE=2 SV=1;; (*TAIR) AT2G14050.1 (e_value=0.0) | Symbols: MCM9 | minichromosome maintenance 9 | chr2:5909240-5913817 FORWARD LENGTH=646;; (*ITAG) Solyc01g105520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85428610-85440515 transcript_region:SL2.40ch01:85428610..85440515+ go_terms:GO:0043140 functional_description:"DNA replication licensing factor (AHRD V1 **** Q8JGR5_DANRE); contains Interpro domain(s) IPR001208 DNA-dependent ATPase MCM "; GO:0043140 NbS00020970g0014.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|0.66|0.75|4|0|583; (*SWP) sp|Q41364|SOT1_SPIOL (e_value=3e-132) 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1;; (*TAIR) AT5G64290.1 (e_value=0.0) | Symbols: DCT, DIT2.1 | dicarboxylate transport 2.1 | chr5:25714495-25716642 REVERSE LENGTH=563;; (*ITAG) Solyc01g105540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85441142-85444895 transcript_region:SL2.40ch01:85441142..85444895- go_terms:GO:0016020 functional_description:"2-oxoglutarate/malate translocator (AHRD V1 **-- Q9FMF7_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0016020 NbS00020970g0005.1 protein AED:0.47 eAED:0.50 QI:0|0.5|0.2|0.8|0.75|0.8|5|63|69 NbS00020970g0015.1 protein AED:0.44 eAED:0.90 QI:0|0|0|1|0|0|2|0|104 NbS00003887g0003.1 protein AED:0.01 eAED:0.01 QI:49|0.75|0.8|1|1|1|5|657|110; (*TAIR) AT2G41945.1 (e_value=2e-47) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17511071-17512898 REVERSE LENGTH=158;; (*ITAG) Solyc01g099730.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:81647826-81653317 transcript_region:SL2.40ch01:81647826..81653317+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003887g0004.1 protein AED:0.37 eAED:0.46 QI:0|0.66|0|0.75|0|0.25|4|0|109; (*TAIR) AT1G32340.1 (e_value=2e-32) | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-11666037 REVERSE LENGTH=688;; (*ITAG) Solyc08g005150.2.1 (e_value=2e-43) genomic_reference:SL2.40ch08 gene_region:97549-104036 transcript_region:SL2.40ch08:97549..104036+ go_terms:GO:0003713,GO:0004842 functional_description:"Ubiquitin ligase (AHRD V1 **-* B3G3Y7_ADIVA); contains Interpro domain(s) IPR006575 RWD "; GO:0003713,GO:0004842 NbS00007781g0038.1 protein AED:0.19 eAED:0.19 QI:0|0.37|0.22|1|0.37|0.44|9|33|652; (*SWP) sp|P54278|PMS2_HUMAN (e_value=1e-77) Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2;; (*TAIR) AT4G02460.1 (e_value=2e-164) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00007781g0024.1 protein AED:0.22 eAED:0.23 QI:0|0.4|0.5|0.66|0.6|0.66|6|0|245; (*SWP) sp|Q9LM71|FKB18_ARATH (e_value=3e-69) Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2;; (*TAIR) AT1G20810.1 (e_value=2e-70) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:7232025-7233367 FORWARD LENGTH=232;; (*ITAG) Solyc04g082660.2.1 (e_value=2e-113) genomic_reference:SL2.40ch04 gene_region:63861559-63864472 transcript_region:SL2.40ch04:63861559..63864472+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- A8YBJ2_MICAE); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00007781g0035.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|0.5|2|0|147; (*TAIR) AT4G02480.1 (e_value=1e-17) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc06g084530.2.1 (e_value=5e-37) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00007781g0032.1 protein AED:0.27 eAED:0.27 QI:186|0.72|0.66|1|0.72|0.66|12|399|611; (*SWP) sp|Q91YQ5|RPN1_MOUSE (e_value=2e-83) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1;; (*TAIR) AT1G76400.1 (e_value=0.0) | Symbols: | Ribophorin I | chr1:28658713-28661672 REVERSE LENGTH=614;; (*ITAG) Solyc04g082670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63864900-63870443 transcript_region:SL2.40ch04:63864900..63870443+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 **** C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I "; GO:0042802,GO:0004579 NbS00007781g0026.1 protein AED:0.28 eAED:0.28 QI:189|1|1|1|0.5|0.8|5|326|168; (*SWP) sp|Q9FPG2|OP21B_ARATH (e_value=2e-69) Outer envelope pore protein 21B, chloroplastic OS=Arabidopsis thaliana GN=OEP21B PE=1 SV=1;; (*TAIR) AT1G76405.2 (e_value=1e-70) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20816.1); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28661994-28663673 FORWARD LENGTH=167;; (*ITAG) Solyc04g082680.2.1 (e_value=3e-104) genomic_reference:SL2.40ch04 gene_region:63870914-63876134 transcript_region:SL2.40ch04:63870914..63876134+ functional_description:"Chloroplast channel forming outer membrane protein (AHRD V1 ***- Q9SM57_PEA)"; NbS00007781g0034.1 protein AED:0.05 eAED:0.29 QI:0|0|0|0.66|0.5|0.33|3|0|264; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=7e-37) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=5e-38) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc04g082690.1.1 (e_value=3e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63880141-63880692 transcript_region:SL2.40ch04:63880141..63880692+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007781g0037.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.66|1|0.8|1|6|0|265; (*SWP) sp|Q9H3S4|TPK1_HUMAN (e_value=5e-45) Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=1 SV=1;; (*TAIR) AT1G02880.3 (e_value=3e-123) | Symbols: TPK1 | thiamin pyrophosphokinase1 | chr1:643063-644485 REVERSE LENGTH=267;; (*ITAG) Solyc09g074970.2.1 (e_value=9e-155) genomic_reference:SL2.40ch09 gene_region:62268508-62273326 transcript_region:SL2.40ch09:62268508..62273326+ go_terms:GO:0004788 functional_description:"Thiamin pyrophosphokinase 1 (AHRD V1 **** B6SUI9_MAIZE); contains Interpro domain(s) IPR016966 Thiamin pyrophosphokinase, eukaryotic "; GO:0004788 NbS00007781g0036.1 protein AED:0.52 eAED:0.71 QI:0|0.16|0.28|0.85|0.66|0.85|7|0|286; (*SWP) sp|Q7ZZ25|ATD1A_DANRE (e_value=3e-25) ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2;; (*TAIR) AT1G02890.2 (e_value=8e-89) | Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1218;; (*ITAG) Solyc06g084530.2.1 (e_value=5e-74) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00003616g0011.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.33|1|1|1|3|0|390; (*SWP) sp|Q9LVA0|BAG7_ARATH (e_value=1e-62) BAG family molecular chaperone regulator 7 OS=Arabidopsis thaliana GN=BAG7 PE=1 SV=1;; (*TAIR) AT5G62390.1 (e_value=7e-64) | Symbols: ATBAG7, BAG7 | BCL-2-associated athanogene 7 | chr5:25052377-25054170 REVERSE LENGTH=446;; (*ITAG) Solyc03g083970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47468935-47471771 transcript_region:SL2.40ch03:47468935..47471771- go_terms:GO:0005516 functional_description:"IQ calmodulin-binding motif family protein (AHRD V1 **** B6TKK9_MAIZE)"; GO:0005516 NbS00003616g0017.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.42|1|0.66|0.57|7|0|742; (*SWP) sp|P29000|INVA_SOLLC (e_value=0.0) Acid beta-fructofuranosidase OS=Solanum lycopersicum GN=TIV1 PE=2 SV=1;; (*TAIR) AT1G62660.1 (e_value=0.0) | Symbols: | Glycosyl hydrolases family 32 protein | chr1:23199949-23203515 FORWARD LENGTH=648;; (*ITAG) Solyc03g083910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47397595-47401871 transcript_region:SL2.40ch03:47397595..47401871- go_terms:GO:0004553 functional_description:"Acid beta-fructofuranosidase (AHRD V1 **-- Q575T1_WHEAT); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004553 NbS00003616g0016.1 protein AED:0.24 eAED:0.24 QI:705|1|0.93|1|0.71|0.6|15|65|384; (*SWP) sp|O64896|TPPA_ARATH (e_value=0.0) Trehalose-phosphate phosphatase A OS=Arabidopsis thaliana GN=TPPA PE=1 SV=1;; (*TAIR) AT5G51460.2 (e_value=0.0) | Symbols: ATTPPA | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:20902266-20904292 FORWARD LENGTH=384;; (*ITAG) Solyc03g083960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47442646-47445417 transcript_region:SL2.40ch03:47442646..47445417- go_terms:GO:0004805 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 **** D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0004805 NbC24074475g0004.1 protein AED:0.05 eAED:0.05 QI:27|1|0.5|1|1|1|2|0|68; (*TAIR) AT2G47980.1 (e_value=2e-28) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=3e-35) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00057089g0009.1 protein AED:0.01 eAED:0.01 QI:25|1|1|1|1|1|2|2|260; (*SWP) sp|Q9ZPY0|DOF25_ARATH (e_value=3e-36) Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3;; (*TAIR) AT3G61850.4 (e_value=2e-39) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=324;; (*ITAG) Solyc10g009360.2.1 (e_value=4e-94) genomic_reference:SL2.40ch10 gene_region:3424646-3426235 transcript_region:SL2.40ch10:3424646..3426235- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 2 (AHRD V1 *-*- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00057089g0006.1 protein AED:0.13 eAED:0.15 QI:0|0.5|0.14|0.85|0.83|0.71|7|0|597; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=4e-52) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT3G18750.2 (e_value=2e-71) | Symbols: WNK6, ZIK5 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=500;; (*ITAG) Solyc10g009350.2.1 (e_value=4e-163) genomic_reference:SL2.40ch10 gene_region:3414014-3418293 transcript_region:SL2.40ch10:3414014..3418293- go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00058271g0002.1 protein AED:0.12 eAED:0.12 QI:655|1|1|1|0.71|0.75|8|249|218; (*SWP) sp|P49043|VPE_CITSI (e_value=2e-107) Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1;; (*TAIR) AT4G32940.1 (e_value=5e-103) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc12g095910.1.1 (e_value=3e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63354423-63359472 transcript_region:SL2.40ch12:63354423..63359472+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-3 (AHRD V1 **-- Q852T0_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00020762g0004.1 protein AED:0.80 eAED:0.81 QI:0|0|0|0.33|1|1|3|0|80 NbS00020762g0007.1 protein AED:0.00 eAED:0.00 QI:193|0.83|1|1|0.83|0.57|7|178|478; (*SWP) sp|Q8GZ38|UNE10_ARATH (e_value=2e-27) Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1;; (*TAIR) AT4G00050.1 (e_value=1e-28) | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17863-19848 FORWARD LENGTH=399;; (*ITAG) Solyc03g115540.1.1 (e_value=6e-143) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59265019-59267254 transcript_region:SL2.40ch03:59265019..59267254+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00056039g0006.1 protein AED:0.03 eAED:0.04 QI:39|0|0|1|0|0|2|0|747; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g007690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2183538-2185754 transcript_region:SL2.40ch08:2183538..2185754+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00038831g0012.1 protein AED:0.03 eAED:0.03 QI:139|1|0.75|1|1|1|4|0|213; (*TAIR) AT5G04910.1 (e_value=2e-64) | Symbols: | unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:1437695-1438770 FORWARD LENGTH=222;; (*ITAG) Solyc10g039380.1.1 (e_value=1e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21450345-21459023 transcript_region:SL2.40ch10:21450345..21459023+ functional_description:"C19orf60 homolog (AHRD V1 *-*- C0H7J3_SALSA)"; NbS00038831g0013.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|161; (*TAIR) AT1G10522.2 (e_value=6e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3470009-3471291 FORWARD LENGTH=179;; (*ITAG) Solyc05g006040.2.1 (e_value=7e-57) genomic_reference:SL2.40ch05 gene_region:773976-777349 transcript_region:SL2.40ch05:773976..777349- functional_description:"Unknown Protein (AHRD V1)"; NbS00038831g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|572|144; (*TAIR) AT1G60010.1 (e_value=2e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:22095660-22096434 REVERSE LENGTH=173;; (*ITAG) Solyc05g006030.2.1 (e_value=1e-87) genomic_reference:SL2.40ch05 gene_region:773056-774112 transcript_region:SL2.40ch05:773056..774112+ functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00027699g0005.1 protein AED:0.35 eAED:0.67 QI:273|0|0.33|1|0|0|3|0|122 NbS00036370g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|0|276; (*SWP) sp|Q9STX9|TIP51_ARATH (e_value=2e-83) Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1;; (*TAIR) AT3G47440.1 (e_value=1e-84) | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1 | chr3:17482054-17482987 FORWARD LENGTH=256;; (*ITAG) Solyc03g093230.2.1 (e_value=2e-136) genomic_reference:SL2.40ch03 gene_region:47871665-47872979 transcript_region:SL2.40ch03:47871665..47872979+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q39956_HELAN); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00036370g0017.1 protein AED:0.13 eAED:0.13 QI:0|0.9|0.95|1|0.9|0.85|21|182|1152; (*SWP) sp|Q9C5Y4|SMC21_ARATH (e_value=0.0) Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2;; (*TAIR) AT5G62410.1 (e_value=0.0) | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural maintenance of chromosomes 2 | chr5:25056308-25062436 FORWARD LENGTH=1175;; (*ITAG) Solyc03g093250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47882488-47886336 transcript_region:SL2.40ch03:47882488..47886336+ go_terms:GO:0005694 functional_description:"Structural maintenance of chromosomes 2 (AHRD V1 **-- Q52KE9_MOUSE); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0005694 NbS00036370g0016.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.92|0.85|14|109|551; (*SWP) sp|Q6YPG5|NOS_ORYSJ (e_value=0.0) Putative nitric oxide synthase OS=Oryza sativa subsp. japonica GN=Os02g0104700 PE=3 SV=1;; (*TAIR) AT3G47450.2 (e_value=0.0) | Symbols: ATNOS1, NOS1, ATNOA1, NOA1, RIF1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:17483195-17486249 REVERSE LENGTH=561;; (*ITAG) Solyc03g093240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47874481-47880681 transcript_region:SL2.40ch03:47874481..47880681+ go_terms:GO:0003924 functional_description:"GTP-binding protein YqeH (AHRD V1 **-- C6VPQ3_LACPJ); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0003924 NbS00036370g0106.1 protein AED:0.06 eAED:0.09 QI:0|0.4|0.5|1|0.4|0.33|6|0|308 NbS00056147g0002.1 protein AED:0.19 eAED:0.19 QI:18|0.33|0|0.5|1|1|4|0|57; (*ITAG) Solyc01g090280.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:75702635-75713819 transcript_region:SL2.40ch01:75702635..75713819- go_terms:GO:0003880 functional_description:"Leucine carboxyl methyltransferase family protein (AHRD V1 **** D7KP37_ARALY); contains Interpro domain(s) IPR016651 Leucine carboxyl methyltransferase, LCTM1 1 "; GO:0003880 NbS00035920g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|200; (*SWP) sp|Q8RYK0|CML31_ORYSJ (e_value=1e-33) Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=2e-33) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc11g071740.1.1 (e_value=1e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52221262-52221867 transcript_region:SL2.40ch11:52221262..52221867- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00014146g0002.1 protein AED:0.42 eAED:0.54 QI:0|0.27|0.16|0.83|1|1|12|0|461; (*TAIR) AT1G44910.1 (e_value=6e-15) | Symbols: ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | chr1:16975930-16982818 FORWARD LENGTH=958;; (*ITAG) Solyc07g022760.2.1 (e_value=9e-50) genomic_reference:SL2.40ch07 gene_region:21372129-21404998 transcript_region:SL2.40ch07:21372129..21404998- go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_MOUSE); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00014146g0005.1 protein AED:0.31 eAED:0.37 QI:0|0|0|1|1|1|2|0|80; (*SWP) sp|P36181|HSP80_SOLLC (e_value=4e-29) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56000.1 (e_value=1e-28) | Symbols: Hsp81.4, AtHsp90.4 | HEAT SHOCK PROTEIN 81.4 | chr5:22677602-22680067 REVERSE LENGTH=699;; (*ITAG) Solyc12g015880.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5868004-5871038 transcript_region:SL2.40ch12:5868004..5871038- go_terms:GO:0005524,GO:0006950 functional_description:"Heat shock protein 90 (AHRD V1 ***- Q14TB1_TOBAC); contains Interpro domain(s) IPR019805 Heat shock protein Hsp90, conserved site IPR018249 EF-HAND 2 IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00062236g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.57|0.37|1|0.28|0.37|8|17|626; (*SWP) sp|Q8GWZ6|SRR1_ARATH (e_value=1e-33) Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2;; (*TAIR) AT5G59560.2 (e_value=1e-34) | Symbols: SRR1 | sensitivity to red light reduced protein (SRR1) | chr5:24000747-24001574 REVERSE LENGTH=275;; (*ITAG) Solyc11g005230.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:193140-194767 transcript_region:SL2.40ch11:193140..194767- functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 *--- D7MSG2_ARALY); contains Interpro domain(s) IPR012942 SRR1 "; NbS00020222g0010.1 protein AED:0.01 eAED:0.01 QI:0|-1|1|1|-1|1|1|0|94 NbS00020222g0018.1 protein AED:0.06 eAED:0.06 QI:123|1|1|1|0.62|0.77|9|637|292; (*SWP) sp|Q5JNC0|COQ5_ORYSJ (e_value=5e-159) 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Oryza sativa subsp. japonica GN=COQ5 PE=2 SV=1;; (*TAIR) AT5G57300.3 (e_value=2e-159) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23208705-23210611 REVERSE LENGTH=288;; (*ITAG) Solyc01g081470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73186474-73193591 transcript_region:SL2.40ch01:73186474..73193591- go_terms:GO:0008168 functional_description:"Ubiquinone/menaquinone biosynthesis methyltransferase ubiE (AHRD V1 ***- D0N8X4_PHYIN); contains Interpro domain(s) IPR004033 UbiE/COQ5 methyltransferase "; GO:0008168 NbS00020222g0019.1 protein AED:0.12 eAED:0.12 QI:221|1|1|1|0.57|0.75|8|209|317; (*SWP) sp|Q3M3Q5|TRMB_ANAVT (e_value=7e-38) tRNA (guanine-N(7)-)-methyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trmB PE=3 SV=1;; (*TAIR) AT5G17660.1 (e_value=3e-105) | Symbols: | tRNA (guanine-N-7) methyltransferase | chr5:5818778-5820811 REVERSE LENGTH=312;; (*ITAG) Solyc01g081460.2.1 (e_value=4e-168) genomic_reference:SL2.40ch01 gene_region:73180915-73185697 transcript_region:SL2.40ch01:73180915..73185697- go_terms:GO:0006400 functional_description:"tRNA (guanine-N(7)-)-methyltransferase (AHRD V1 ***- D8G8F8_9CYAN); contains Interpro domain(s) IPR003358 tRNA (guanine-N-7) methyltransferase "; GO:0006400 NbS00020222g0026.1 protein AED:0.25 eAED:0.25 QI:244|1|0.85|1|0.83|0.71|7|0|643; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=2e-92) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G08540.1 (e_value=0.0) | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | RNApolymerase sigma subunit 2 | chr1:2703461-2706696 FORWARD LENGTH=572;; (*ITAG) Solyc01g081490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73199206-73204884 transcript_region:SL2.40ch01:73199206..73204884+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 *-*- Q59965_SYNP2); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00020222g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.28|0.71|1|1|7|0|388; (*TAIR) AT5G17670.1 (e_value=6e-123) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5821082-5822600 FORWARD LENGTH=309;; (*ITAG) Solyc01g081480.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:73194021-73197709 transcript_region:SL2.40ch01:73194021..73197709+ go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MVA3 (AHRD V1 **-- Q9FN84_ARATH)"; GO:0031177 NbS00020222g0020.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.4|0.8|0|0.2|5|457|359; (*SWP) sp|Q944N1|LHP1_SOLLC (e_value=4e-125) Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2;; (*TAIR) AT5G17690.1 (e_value=5e-35) | Symbols: TFL2, LHP1 | like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445;; (*ITAG) Solyc01g081500.2.1 (e_value=4e-127) genomic_reference:SL2.40ch01 gene_region:73210934-73216952 transcript_region:SL2.40ch01:73210934..73216952+ go_terms:GO:0003677,GO:0035064 functional_description:"Histone-lysine N-methyltransferase SUV39H2 (AHRD V1 *--* SUV92_CHICK); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0003677,GO:0035064 NbS00007771g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|101 NbC24762244g0001.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|174; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=5e-61) Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1;; (*TAIR) AT3G09220.1 (e_value=4e-62) | Symbols: LAC7 | laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567;; (*ITAG) Solyc07g049460.2.1 (e_value=7e-101) genomic_reference:SL2.40ch07 gene_region:57063539-57067729 transcript_region:SL2.40ch07:57063539..57067729+ go_terms:GO:0005515,GO:0004322 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase "; GO:0005515,GO:0004322 NbC25808748g0004.1 protein AED:0.07 eAED:0.07 QI:55|0.75|0.6|0.8|0.5|0.8|5|0|235; (*SWP) sp|Q40554|EIF3A_TOBAC (e_value=7e-139) Eukaryotic translation initiation factor 3 subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1;; (*TAIR) AT4G11420.1 (e_value=3e-131) | Symbols: EIF3A, ATEIF3A-1, EIF3A-1, ATTIF3A1, TIF3A1 | eukaryotic translation initiation factor 3A | chr4:6947834-6952053 REVERSE LENGTH=987;; (*ITAG) Solyc10g084670.1.1 (e_value=4e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63434821-63441149 transcript_region:SL2.40ch10:63434821..63441149+ functional_description:"Eukaryotic translation initiation factor 3 subunit A (AHRD V1 ***- C0H9S0_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; NbS00031914g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|191; (*SWP) sp|P10978|POLX_TOBAC (e_value=8e-32) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc07g009390.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4450802-4451458 transcript_region:SL2.40ch07:4450802..4451458+ functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR)"; NbS00031914g0008.1 protein AED:0.34 eAED:0.34 QI:8|0.71|0.75|1|0.57|0.5|8|124|339; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=2e-118) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=1e-119) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc10g039280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20931712-20936807 transcript_region:SL2.40ch10:20931712..20936807+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00031914g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc08g044370.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00004090g0013.1 protein AED:0.07 eAED:0.09 QI:258|1|0.5|1|1|1|2|0|675; (*SWP) sp|P45730|PALY_POPTR (e_value=0.0) Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=0.0) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00004090g0014.1 protein AED:0.24 eAED:0.24 QI:281|0.85|0.87|1|0.71|0.75|8|480|262; (*SWP) sp|P22302|SODF_NICPL (e_value=2e-69) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G23310.1 (e_value=4e-126) | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7850624-7852241 FORWARD LENGTH=263;; (*ITAG) Solyc02g021140.2.1 (e_value=2e-149) genomic_reference:SL2.40ch02 gene_region:12479343-12481654 transcript_region:SL2.40ch02:12479343..12481654- go_terms:GO:0008965,GO:0005507 functional_description:"Superoxide dismutase (AHRD V1 ***- B9S4J6_RICCO); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0008965,GO:0005507 NbS00004090g0005.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|120; (*SWP) sp|P45735|PALY_VITVI (e_value=6e-61) Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=8e-59) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=1e-57) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00056880g0003.1 protein AED:0.39 eAED:0.40 QI:120|0.66|0.5|1|1|1|4|0|217; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=3e-72) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT1G03070.2 (e_value=2e-123) | Symbols: | Bax inhibitor-1 family protein | chr1:730148-731379 FORWARD LENGTH=247;; (*ITAG) Solyc06g084130.2.1 (e_value=8e-128) genomic_reference:SL2.40ch06 gene_region:45643108-45644440 transcript_region:SL2.40ch06:45643108..45644440+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TZF1_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00011957g0001.1 protein AED:0.26 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|66; (*SWP) sp|Q943F3|RL18A_ORYSJ (e_value=7e-32) 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1;; (*TAIR) AT2G34480.1 (e_value=1e-32) | Symbols: | Ribosomal protein L18ae/LX family protein | chr2:14532916-14534161 REVERSE LENGTH=178;; (*ITAG) Solyc02g070650.2.1 (e_value=1e-33) genomic_reference:SL2.40ch02 gene_region:34912165-34914546 transcript_region:SL2.40ch02:34912165..34914546+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae "; GO:0003735,GO:0005515 NbS00011957g0108.1 protein AED:0.28 eAED:0.28 QI:179|1|1|1|0.88|0.9|10|666|387 NbS00011957g0107.1 protein AED:0.04 eAED:0.04 QI:77|1|1|1|1|1|2|94|355 NbC25652345g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|0.5|1|1|2|0|60; (*ITAG) Solyc08g074750.2.1 (e_value=6e-22) genomic_reference:SL2.40ch08 gene_region:56052840-56057524 transcript_region:SL2.40ch08:56052840..56057524- go_terms:GO:0005515 functional_description:"Zinc finger protein 706 (AHRD V1 -**- C3KIH7_ANOFI); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 "; GO:0005515 NbS00056239g0006.1 protein AED:0.11 eAED:0.11 QI:40|1|1|1|1|1|8|177|673; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc01g105450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85376669-85380983 transcript_region:SL2.40ch01:85376669..85380983- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00017273g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.33|1|1|1|3|0|264; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=7e-59) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT1G68320.1 (e_value=6e-78) | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286;; (*ITAG) Solyc05g009230.1.1 (e_value=5e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3372023-3373258 transcript_region:SL2.40ch05:3372023..3373258- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9C9G7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00024735g0006.1 protein AED:0.07 eAED:0.07 QI:85|1|1|1|1|1|2|121|122; (*TAIR) AT4G30845.1 (e_value=5e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15019895-15020319 FORWARD LENGTH=114;; (*ITAG) Solyc07g006040.2.1 (e_value=1e-48) genomic_reference:SL2.40ch07 gene_region:889320-890200 transcript_region:SL2.40ch07:889320..890200- functional_description:"Unknown Protein (AHRD V1)"; NbS00024735g0009.1 protein AED:0.13 eAED:0.29 QI:0|0.14|0.12|1|0|0.12|8|0|259; (*SWP) sp|Q949T8|ASHR3_ARATH (e_value=2e-46) Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1;; (*TAIR) AT4G30860.1 (e_value=1e-47) | Symbols: ASHR3, SDG4 | SET domain group 4 | chr4:15024546-15027427 FORWARD LENGTH=497;; (*ITAG) Solyc07g006060.2.1 (e_value=1e-86) genomic_reference:SL2.40ch07 gene_region:902620-910635 transcript_region:SL2.40ch07:902620..910635+ go_terms:GO:0046974 functional_description:"Histone-lysine N-methyltransferase, H3 lysine-36 specific (AHRD V1 **** SET2_CANAL); contains Interpro domain(s) IPR001214 SET "; GO:0046974 NbS00052602g0004.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|65; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=1e-30) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=8e-32) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g066660.1.1 (e_value=1e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:52686293-52686949 transcript_region:SL2.40ch08:52686293..52686949- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00052602g0009.1 protein AED:0.20 eAED:0.20 QI:811|1|1|1|0.33|0.25|4|464|436; (*SWP) sp|Q9SXC4|IRX9H_ARATH (e_value=3e-116) Probable beta-1,4-xylosyltransferase IRX9H OS=Arabidopsis thaliana GN=IRX9H PE=1 SV=2;; (*TAIR) AT1G27600.2 (e_value=2e-117) | Symbols: IRX9-L, I9H | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:9604083-9605881 REVERSE LENGTH=394;; (*ITAG) Solyc11g071230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51851248-51854001 transcript_region:SL2.40ch11:51851248..51854001- go_terms:GO:0016020 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-- B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0016020 NbS00052602g0010.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|0.66|0.75|4|0|201; (*TAIR) AT5G11600.1 (e_value=8e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3733815-3735015 REVERSE LENGTH=242;; (*ITAG) Solyc11g071220.1.1 (e_value=2e-65) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51827843-51831775 transcript_region:SL2.40ch11:51827843..51831775- functional_description:"Os05g0596200 protein (Fragment) (AHRD V1 *-*- Q0DFE0_ORYSJ)"; NbS00016464g0001.1 protein AED:0.29 eAED:0.66 QI:0|0|0|1|1|1|2|0|83 NbS00016464g0006.1 protein AED:0.06 eAED:0.06 QI:1041|1|1|1|1|1|9|298|423; (*SWP) sp|Q9FR37|AMI1_ARATH (e_value=7e-165) Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1;; (*TAIR) AT1G08980.1 (e_value=6e-166) | Symbols: ATAMI1, AMI1, ATTOC64-I, TOC64-I | amidase 1 | chr1:2884455-2886430 FORWARD LENGTH=425;; (*ITAG) Solyc10g086170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64407839-64409119 transcript_region:SL2.40ch10:64407839..64409119- go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00016464g0016.1 protein AED:0.27 eAED:0.27 QI:194|0.8|0.81|0.90|0.1|0.18|11|226|424; (*TAIR) AT5G27400.1 (e_value=1e-86) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:9676362-9678285 FORWARD LENGTH=369;; (*ITAG) Solyc10g009400.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3456047-3464290 transcript_region:SL2.40ch10:3456047..3464290- functional_description:"FAM86A (AHRD V1 **-- B5XFD7_SALSA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00003903g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.45|0.25|1|0.54|0.5|12|0|1073; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=6e-42) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc05g007290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1944633-1951051 transcript_region:SL2.40ch05:1944633..1951051- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00022138g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|0.94|1|0.93|0.94|17|0|812; (*SWP) sp|Q9SWB4|PARP3_SOYBN (e_value=0.0) Poly [ADP-ribose] polymerase 3 OS=Glycine max GN=PARP3 PE=2 SV=1;; (*TAIR) AT5G22470.1 (e_value=0.0) | Symbols: | NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases | chr5:7447045-7450743 FORWARD LENGTH=814;; (*ITAG) Solyc11g067250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50067495-50073934 transcript_region:SL2.40ch11:50067495..50073934- go_terms:GO:0005634,GO:0006471,GO:0003950,GO:0005622 functional_description:"Poly (AHRD V1 ***- B9SCR8_RICCO); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0005634,GO:0006471,GO:0003950,GO:0005622 NbS00022138g0006.1 protein AED:0.14 eAED:0.14 QI:245|1|0.5|1|0|0|2|0|93 NbS00022138g0005.1 protein AED:0.51 eAED:0.55 QI:0|0|0.5|1|0|0.25|4|218|116 NbS00041018g0005.1 protein AED:0.72 eAED:0.76 QI:0|1|0|1|1|1|2|0|175 NbS00043378g0008.1 protein AED:0.05 eAED:0.05 QI:5337|0.66|0.5|1|0.66|0.5|4|0|243; (*SWP) sp|Q9FWR5|GCA1_ARATH (e_value=2e-98) Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1;; (*TAIR) AT1G19580.1 (e_value=1e-99) | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1 | chr1:6774937-6777092 FORWARD LENGTH=275;; (*ITAG) Solyc02g085040.2.1 (e_value=3e-104) genomic_reference:SL2.40ch02 gene_region:42643295-42648586 transcript_region:SL2.40ch02:42643295..42648586- go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_CLOBH); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00043378g0007.1 protein AED:0.43 eAED:0.44 QI:0|0.8|0.66|1|0.8|0.66|6|0|170; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=8e-45) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT3G53620.1 (e_value=3e-45) | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216;; (*ITAG) Solyc02g085050.2.1 (e_value=2e-70) genomic_reference:SL2.40ch02 gene_region:42649932-42653288 transcript_region:SL2.40ch02:42649932..42653288- go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q8LA73_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00048133g0010.1 protein AED:0.11 eAED:0.11 QI:200|1|0.8|1|0.75|0.6|5|692|229; (*TAIR) AT5G63000.1 (e_value=8e-95) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:25280151-25281463 REVERSE LENGTH=201;; (*ITAG) Solyc03g112810.2.1 (e_value=2e-120) genomic_reference:SL2.40ch03 gene_region:57180241-57183176 transcript_region:SL2.40ch03:57180241..57183176+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048133g0005.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|234; (*TAIR) AT5G50290.1 (e_value=1e-99) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20461814-20463896 FORWARD LENGTH=303;; (*ITAG) Solyc03g112790.2.1 (e_value=6e-144) genomic_reference:SL2.40ch03 gene_region:57176091-57177710 transcript_region:SL2.40ch03:57176091..57177710- functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 ***- Q9FGR6_ARATH)"; NbS00048133g0009.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0.46|1|0.83|0.76|13|0|571; (*SWP) sp|O00566|MPP10_HUMAN (e_value=1e-37) U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2;; (*TAIR) AT5G66540.1 (e_value=8e-96) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26556653-26559310 REVERSE LENGTH=524;; (*ITAG) Solyc03g112820.2.1 (e_value=2e-131) genomic_reference:SL2.40ch03 gene_region:57183847-57188738 transcript_region:SL2.40ch03:57183847..57188738- go_terms:GO:0030529 functional_description:"U3 small nucleolar ribonucleoprotein protein MPP10 (AHRD V1 *-*- B0WQ74_CULQU); contains Interpro domain(s) IPR012173 U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p "; GO:0030529 NbS00010641g0003.1 protein AED:0.00 eAED:0.00 QI:65|1|1|1|0|0|2|5|37 NbS00006158g0017.1 protein AED:0.16 eAED:0.16 QI:335|0.83|0.71|1|0.5|0.57|7|0|286; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=2e-116) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=1e-117) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc06g073340.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00006158g0015.1 protein AED:0.26 eAED:0.26 QI:17|1|0.5|1|1|1|2|0|67; (*ITAG) Solyc06g073360.2.1 (e_value=2e-20) genomic_reference:SL2.40ch06 gene_region:41594463-41597870 transcript_region:SL2.40ch06:41594463..41597870+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006158g0018.1 protein AED:0.41 eAED:0.46 QI:64|0.83|0.85|1|0.83|0.85|7|0|228; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=7e-126) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=5e-127) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc06g073340.2.1 (e_value=1e-141) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00006158g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.62|0.66|1|1|1|9|58|533; (*SWP) sp|Q9SIQ7|CDPKO_ARATH (e_value=0.0) Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1;; (*TAIR) AT2G31500.1 (e_value=0.0) | Symbols: CPK24 | calcium-dependent protein kinase 24 | chr2:13414016-13416324 FORWARD LENGTH=582;; (*ITAG) Solyc06g073350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41589654-41593571 transcript_region:SL2.40ch06:41589654..41593571- go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q3YAT0_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00051673g0003.1 protein AED:0.03 eAED:0.03 QI:24|1|1|1|1|1|3|59|510; (*SWP) sp|O49432|QRT3_ARATH (e_value=0.0) Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1;; (*TAIR) AT4G20050.2 (e_value=0.0) | Symbols: QRT3 | Pectin lyase-like superfamily protein | chr4:10849911-10852090 REVERSE LENGTH=481;; (*ITAG) Solyc02g068400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32931014-32932944 transcript_region:SL2.40ch02:32931014..32932944+ go_terms:GO:0004650 functional_description:"AT4G20050-like protein (Fragment) (AHRD V1 *-*- D6PQZ2_9BRAS); contains Interpro domain(s) IPR011050 Pectin lyase fold/virulence factor "; GO:0004650 NbS00014615g0006.1 protein AED:0.19 eAED:0.19 QI:9|1|0.75|1|1|1|8|0|409; (*SWP) sp|A7RG82|CLP1_NEMVE (e_value=4e-103) Protein CLP1 homolog OS=Nematostella vectensis GN=v1g236308 PE=3 SV=1;; (*TAIR) AT3G04680.2 (e_value=0.0) | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1270053-1272415 REVERSE LENGTH=444;; (*ITAG) Solyc01g009290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3323813-3335853 transcript_region:SL2.40ch01:3323813..3335853- go_terms:GO:0005515,GO:0051736 functional_description:"Polyribonucleotide 5'-hydroxyl-kinase Clp1 (AHRD V1 **** CLP1_CHICK); contains Interpro domain(s) IPR010655 Pre-mRNA cleavage complex II Clp1 "; GO:0005515,GO:0051736 NbS00014615g0004.1 protein AED:0.55 eAED:0.55 QI:0|0.5|0|1|0|0.33|3|0|68; (*TAIR) AT3G04680.2 (e_value=3e-14) | Symbols: CLPS3 | CLP-similar protein 3 | chr3:1270053-1272415 REVERSE LENGTH=444;; (*ITAG) Solyc01g009290.2.1 (e_value=7e-23) genomic_reference:SL2.40ch01 gene_region:3323813-3335853 transcript_region:SL2.40ch01:3323813..3335853- go_terms:GO:0005515,GO:0051736 functional_description:"Polyribonucleotide 5'-hydroxyl-kinase Clp1 (AHRD V1 **** CLP1_CHICK); contains Interpro domain(s) IPR010655 Pre-mRNA cleavage complex II Clp1 "; GO:0005515,GO:0051736 NbS00004976g0018.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.33|3|0|744; (*SWP) sp|Q6GNY1|MIB1_XENLA (e_value=2e-16) E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1;; (*TAIR) AT3G01750.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:270615-272691 FORWARD LENGTH=664;; (*ITAG) Solyc02g093850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49129322-49132516 transcript_region:SL2.40ch02:49129322..49132516+ go_terms:GO:0003950 functional_description:"Ankyrin repeat domain-containing protein 50 (AHRD V1 *--- B0W609_CULQU); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0003950 NbS00004976g0017.1 protein AED:0.21 eAED:0.28 QI:0|0.75|0.6|1|1|1|5|0|348; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=0.0) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.1 (e_value=0.0) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446;; (*ITAG) Solyc02g093860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00004976g0001.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.5|1|1|1|6|231|346; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=0.0) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.1 (e_value=0.0) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446;; (*ITAG) Solyc02g093860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00044932g0004.1 protein AED:0.06 eAED:0.06 QI:270|1|0.8|1|0.25|0.2|5|0|184; (*SWP) sp|Q5EAF2|IP5PB_ARATH (e_value=2e-55) Type I inositol 1,4,5-trisphosphate 5-phosphatase 11 OS=Arabidopsis thaliana GN=At1g47510 PE=2 SV=1;; (*TAIR) AT1G47510.1 (e_value=2e-56) | Symbols: AT5PTASE11, 5PTASE11 | inositol polyphosphate 5-phosphatase 11 | chr1:17435991-17438296 REVERSE LENGTH=334;; (*ITAG) Solyc04g079820.2.1 (e_value=1e-107) genomic_reference:SL2.40ch04 gene_region:61722723-61726819 transcript_region:SL2.40ch04:61722723..61726819+ go_terms:GO:0004437 functional_description:"Inositol 5-phosphatase 4 (AHRD V1 ***- Q8I7P3_DICDI); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00025345g0112.1 protein AED:0.31 eAED:0.42 QI:0|0.5|0|1|0|0|3|0|138 NbS00025345g0111.1 protein AED:0.32 eAED:0.36 QI:287|0.85|0.75|1|0.28|0.37|8|0|162 NbS00002064g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.33|1|0|0.33|3|0|207; (*SWP) sp|Q38898|AKT2_ARATH (e_value=9e-94) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=7e-95) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=6e-114) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00011029g0005.1 protein AED:0.25 eAED:0.28 QI:0|0|0|1|0|0|3|0|232; (*SWP) sp|Q9SGS5|Y1607_ARATH (e_value=4e-20) Uncharacterized protein At1g76070 OS=Arabidopsis thaliana GN=At1g76070 PE=1 SV=1;; (*TAIR) AT1G76070.1 (e_value=3e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28546617-28547435 FORWARD LENGTH=272;; (*ITAG) Solyc12g094390.1.1 (e_value=2e-79) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:62957470-62958198 transcript_region:SL2.40ch12:62957470..62958198+ functional_description:"Syringolide-induced protein 14-1-1 (Fragment) (AHRD V1 *-*- Q06H38_ARAHY)"; NbS00023474g0002.1 protein AED:0.34 eAED:0.34 QI:1079|0.5|0.66|0.66|0.5|0.33|3|0|115; (*TAIR) AT3G26360.1 (e_value=7e-39) | Symbols: | Ribosomal protein S21 family protein | chr3:9655963-9656373 REVERSE LENGTH=101;; (*ITAG) Solyc10g054060.1.1 (e_value=8e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50012917-50016789 transcript_region:SL2.40ch10:50012917..50016789- go_terms:GO:0005840 functional_description:"Genomic DNA chromosome 3 BAC clone F20C19 (AHRD V1 ***- Q9LIP0_ARATH); contains Interpro domain(s) IPR001911 Ribosomal protein S21 "; GO:0005840 NbS00044783g0003.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.4|0.8|1|1|5|0|949; (*SWP) sp|Q9FXI5|IQD32_ARATH (e_value=3e-77) Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3;; (*TAIR) AT1G19870.1 (e_value=2e-78) | Symbols: iqd32 | IQ-domain 32 | chr1:6895400-6898539 REVERSE LENGTH=794;; (*ITAG) Solyc04g081210.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62803374-62809165 transcript_region:SL2.40ch04:62803374..62809165+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein IQ (AHRD V1 *--* A8CF59_BRACM); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00011324g0002.1 protein AED:0.08 eAED:0.08 QI:25|0.8|0.81|1|0.9|0.81|11|277|719; (*SWP) sp|Q9NRL2|BAZ1A_HUMAN (e_value=3e-19) Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2;; (*TAIR) AT5G08630.1 (e_value=0.0) | Symbols: | DDT domain-containing protein | chr5:2798575-2802138 REVERSE LENGTH=723;; (*ITAG) Solyc05g056530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64942049-64951393 transcript_region:SL2.40ch05:64942049..64951393+ go_terms:GO:0016020 functional_description:"DDT domain-containing protein (AHRD V1 **-- D7M1G4_ARALY); contains Interpro domain(s) IPR013136 WSTF/Acf1/Cbp146 "; GO:0016020 NbS00011324g0017.1 protein AED:0.24 eAED:0.24 QI:78|0.69|0.78|1|0.53|0.78|14|220|521; (*SWP) sp|Q8N4J0|CI041_HUMAN (e_value=9e-31) UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1;; (*TAIR) AT2G32170.1 (e_value=1e-96) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:13666476-13670924 FORWARD LENGTH=504;; (*ITAG) Solyc05g056520.2.1 (e_value=3e-153) genomic_reference:SL2.40ch05 gene_region:64926739-64939085 transcript_region:SL2.40ch05:64926739..64939085- go_terms:GO:0019901,GO:0004699 functional_description:"Methyltransferase (AHRD V1 **-- B6K3A3_SCHJY); contains Interpro domain(s) IPR012901 N2227-like "; GO:0019901,GO:0004699 NbS00021397g0003.1 protein AED:0.01 eAED:0.03 QI:0|1|0.66|1|1|1|3|0|201; (*TAIR) AT2G15580.1 (e_value=2e-33) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196;; (*ITAG) Solyc07g007160.2.1 (e_value=1e-87) genomic_reference:SL2.40ch07 gene_region:1919123-1921221 transcript_region:SL2.40ch07:1919123..1921221- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q8LJR8_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017284g0014.1 protein AED:0.17 eAED:0.17 QI:161|1|1|1|1|1|9|281|255; (*TAIR) AT3G18380.1 (e_value=1e-68) | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=348;; (*ITAG) Solyc08g066390.2.1 (e_value=1e-153) genomic_reference:SL2.40ch08 gene_region:52209116-52215073 transcript_region:SL2.40ch08:52209116..52215073+ functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 ***- Q0DC52_ORYSJ)"; NbS00017284g0009.1 protein AED:0.04 eAED:0.04 QI:380|1|1|1|1|1|16|456|726; (*SWP) sp|P40234|CKI2_SCHPO (e_value=6e-59) Casein kinase I homolog 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cki2 PE=1 SV=2;; (*TAIR) AT2G25760.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr2:10985118-10988652 REVERSE LENGTH=673;; (*ITAG) Solyc12g095830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63287600-63291851 transcript_region:SL2.40ch12:63287600..63291851+ go_terms:GO:0006468 functional_description:"Casein kinase I (AHRD V1 ***- D8V7I8_SESIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017284g0011.1 protein AED:0.25 eAED:0.25 QI:0|1|0.89|1|0.94|0.94|19|0|575; (*SWP) sp|P37223|MAOX_MESCR (e_value=0.0) NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1;; (*TAIR) AT1G79750.1 (e_value=0.0) | Symbols: ATNADP-ME4, NADP-ME4 | NADP-malic enzyme 4 | chr1:30007655-30011179 REVERSE LENGTH=646;; (*ITAG) Solyc08g066360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52156549-52163406 transcript_region:SL2.40ch08:52156549..52163406- go_terms:GO:0004473 functional_description:"Malic enzyme (AHRD V1 ***- B9RKI6_RICCO); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00017284g0012.1 protein AED:0.47 eAED:0.73 QI:0|0|0|1|0|0|2|0|68; (*ITAG) Solyc08g066360.2.1 (e_value=1e-13) genomic_reference:SL2.40ch08 gene_region:52156549-52163406 transcript_region:SL2.40ch08:52156549..52163406- go_terms:GO:0004473 functional_description:"Malic enzyme (AHRD V1 ***- B9RKI6_RICCO); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0004473 NbS00029442g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.66|9|0|605; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=2e-87) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.2 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=625;; (*ITAG) Solyc01g088400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00029442g0108.1 protein AED:0.12 eAED:0.12 QI:0|1|0.75|1|1|1|4|0|219 NbS00058336g0005.1 protein AED:0.29 eAED:0.29 QI:227|1|1|1|1|1|7|368|215; (*SWP) sp|Q8GYX0|MOB1_ARATH (e_value=2e-135) MOB kinase activator-like 1 OS=Arabidopsis thaliana GN=At4g19045 PE=2 SV=1;; (*TAIR) AT5G45550.1 (e_value=3e-139) | Symbols: | Mob1/phocein family protein | chr5:18462284-18464840 FORWARD LENGTH=215;; (*ITAG) Solyc07g041730.2.1 (e_value=5e-153) genomic_reference:SL2.40ch07 gene_region:51399399-51402969 transcript_region:SL2.40ch07:51399399..51402969+ go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6TBL6_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein "; GO:0019900 NbS00058336g0006.1 protein AED:0.20 eAED:0.20 QI:338|1|1|1|0.87|0.88|9|545|650; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-82) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G35570.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:13750101-13753383 REVERSE LENGTH=652;; (*ITAG) Solyc07g041750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51404606-51417208 transcript_region:SL2.40ch07:51404606..51417208- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00028443g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|469; (*TAIR) AT1G35830.1 (e_value=1e-17) | Symbols: | VQ motif-containing protein | chr1:13321214-13322122 REVERSE LENGTH=302;; (*ITAG) Solyc04g073950.1.1 (e_value=4e-124) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:57556744-57558138 transcript_region:SL2.40ch04:57556744..57558138+ functional_description:"VQ motif family protein expressed (AHRD V1 *-*- Q10KE8_ORYSJ); contains Interpro domain(s) IPR008889 VQ "; NbS00026389g0004.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0.2|0|6|0|284; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=1e-68) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G32010.2 (e_value=4e-83) | Symbols: CVL1 | CVP2 like 1 | chr2:13625344-13628081 FORWARD LENGTH=594;; (*ITAG) Solyc06g054010.2.1 (e_value=5e-105) genomic_reference:SL2.40ch06 gene_region:33366025-33371121 transcript_region:SL2.40ch06:33366025..33371121+ go_terms:GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0046030 NbS00016843g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|188; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=7e-41) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G17800.1 (e_value=3e-80) | Symbols: | Predicted AT-hook DNA-binding family protein | chr4:9895549-9896427 REVERSE LENGTH=292;; (*ITAG) Solyc01g080960.2.1 (e_value=2e-78) genomic_reference:SL2.40ch01 gene_region:72799732-72800762 transcript_region:SL2.40ch01:72799732..72800762- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR79_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00016843g0009.1 protein AED:0.26 eAED:0.26 QI:185|1|1|1|1|1|5|420|373; (*TAIR) AT2G33620.4 (e_value=3e-64) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc08g077030.2.1 (e_value=1e-105) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00016843g0010.1 protein AED:0.30 eAED:0.30 QI:267|0.91|0.92|1|1|1|13|451|439; (*SWP) sp|P54672|AP2M_DICDI (e_value=2e-161) AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2;; (*TAIR) AT5G46630.1 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923252 FORWARD LENGTH=438;; (*ITAG) Solyc08g006960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1538603-1546249 transcript_region:SL2.40ch08:1538603..1546249- go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00056856g0002.1 protein AED:0.32 eAED:0.32 QI:101|1|1|1|1|1|2|486|93; (*SWP) sp|Q6AVK1|COSA_ORYSJ (e_value=9e-34) Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1;; (*TAIR) AT4G33640.1 (e_value=3e-32) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159727-16160211 REVERSE LENGTH=95;; (*ITAG) Solyc11g044230.1.1 (e_value=1e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:35165332-35168495 transcript_region:SL2.40ch11:35165332..35168495+ functional_description:"UPF0727 protein C6orf115 homolog (AHRD V1 *-*- CF115_XENLA)"; NbS00044217g0012.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|4|203|314; (*SWP) sp|Q6GLL2|ABH6A_XENLA (e_value=2e-13) Monoacylglycerol lipase abhd6-A OS=Xenopus laevis GN=abhd6-a PE=2 SV=1;; (*TAIR) AT5G09430.1 (e_value=2e-123) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2932162-2933362 FORWARD LENGTH=311;; (*ITAG) Solyc04g074220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57808345-57813076 transcript_region:SL2.40ch04:57808345..57813076+ functional_description:"Hydrolase (AHRD V1 ***- Q4PSG2_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00044217g0013.1 protein AED:0.12 eAED:0.12 QI:414|0.83|0.71|1|0.83|0.85|7|427|262; (*SWP) sp|P93212|14337_SOLLC (e_value=3e-172) 14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2;; (*TAIR) AT1G34760.2 (e_value=2e-148) | Symbols: GRF11, GF14 OMICRON, RHS5 | general regulatory factor 11 | chr1:12743981-12745603 REVERSE LENGTH=252;; (*ITAG) Solyc04g074230.2.1 (e_value=1e-163) genomic_reference:SL2.40ch04 gene_region:57813201-57817028 transcript_region:SL2.40ch04:57813201..57817028- go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00044217g0020.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.28|1|0.66|0.57|7|679|1148; (*SWP) sp|Q9LME6|MBD8_ARATH (e_value=6e-30) Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 PE=2 SV=1;; (*TAIR) AT1G22310.1 (e_value=2e-31) | Symbols: MBD8, ATMBD8 | methyl-CPG-binding domain 8 | chr1:7881714-7883418 REVERSE LENGTH=425;; (*ITAG) Solyc04g074250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57830787-57838718 transcript_region:SL2.40ch04:57830787..57838718- go_terms:GO:0003677,GO:0005622 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9H725_POPTR); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003677,GO:0005622 NbS00044217g0019.1 protein AED:0.36 eAED:0.36 QI:46|0.6|0.83|1|0.4|0.33|6|0|302; (*SWP) sp|Q9SA00|APRL4_ARATH (e_value=2e-88) 5'-adenylylsulfate reductase-like 4 OS=Arabidopsis thaliana GN=APRL4 PE=2 SV=1;; (*TAIR) AT1G34780.1 (e_value=1e-89) | Symbols: ATAPRL4, APRL4 | APR-like 4 | chr1:12748835-12750124 REVERSE LENGTH=310;; (*ITAG) Solyc04g074240.2.1 (e_value=4e-171) genomic_reference:SL2.40ch04 gene_region:57825733-57829464 transcript_region:SL2.40ch04:57825733..57829464- go_terms:GO:0045454 functional_description:"Adenosine 5&apos-phosphosulfate reductase 3 (AHRD V1 **-- Q5EUC7_MAIZE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00049484g0006.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0.5|0.33|3|0|316; (*SWP) sp|Q9SVQ0|ERF62_ARATH (e_value=1e-14) Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1;; (*TAIR) AT4G13620.1 (e_value=7e-16) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:7932138-7933304 FORWARD LENGTH=388;; (*ITAG) Solyc09g091950.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66501954-66503585 transcript_region:SL2.40ch09:66501954..66503585+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00049484g0008.1 protein AED:0.13 eAED:0.13 QI:355|1|1|1|0.6|0.83|6|1054|316; (*SWP) sp|Q9MAT6|HMG15_ARATH (e_value=9e-98) High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15 PE=2 SV=1;; (*TAIR) AT1G04880.1 (e_value=7e-99) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:1376106-1378264 REVERSE LENGTH=448;; (*ITAG) Solyc09g091960.2.1 (e_value=6e-167) genomic_reference:SL2.40ch09 gene_region:66506237-66509916 transcript_region:SL2.40ch09:66506237..66509916- go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family protein (AHRD V1 **-- D7KE87_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00034490g0007.1 protein AED:0.02 eAED:0.03 QI:0|1|0|1|1|1|2|0|540; (*SWP) sp|Q9LHQ6|OCT4_ARATH (e_value=0.0) Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1;; (*TAIR) AT3G20660.1 (e_value=0.0) | Symbols: AtOCT4, 4-Oct | organic cation/carnitine transporter4 | chr3:7225271-7228510 REVERSE LENGTH=526;; (*ITAG) Solyc07g063920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63479200-63481729 transcript_region:SL2.40ch07:63479200..63481729+ go_terms:GO:0005351 functional_description:"Solute carrier family 22 member 6 (AHRD V1 ***- B5X2P9_SALSA); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00022752g0010.1 protein AED:0.10 eAED:0.10 QI:425|1|1|1|0.75|0.6|5|454|475; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=6e-47) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=1e-89) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc04g081190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62784623-62788098 transcript_region:SL2.40ch04:62784623..62788098+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00022752g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|325; (*SWP) sp|Q8L999|BPC6_ARATH (e_value=4e-103) Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1;; (*TAIR) AT5G42520.2 (e_value=2e-104) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=338;; (*ITAG) Solyc04g081170.2.1 (e_value=2e-164) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00022752g0013.1 protein AED:0.14 eAED:0.17 QI:403|0.75|0.84|1|0.5|0.61|13|419|498; (*SWP) sp|Q9P258|RCC2_HUMAN (e_value=5e-57) Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2;; (*TAIR) AT1G19880.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr1:6900648-6903818 REVERSE LENGTH=538;; (*ITAG) Solyc04g081200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62789119-62797662 transcript_region:SL2.40ch04:62789119..62797662+ go_terms:GO:0005085,GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005085,GO:0008536 NbS00022752g0005.1 protein AED:0.15 eAED:0.41 QI:0|0|0|1|1|1|2|0|71; (*TAIR) AT1G30845.1 (e_value=2e-22) | Symbols: | unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr1:10979856-10980427 FORWARD LENGTH=118;; (*ITAG) Solyc04g081160.2.1 (e_value=2e-34) genomic_reference:SL2.40ch04 gene_region:62769488-62772286 transcript_region:SL2.40ch04:62769488..62772286+ functional_description:"Cell growth defect factor 2 (AHRD V1 ***- B6T7D5_MAIZE)"; NbS00002834g0002.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|489; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=3e-175) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G25510.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:8959372-8960823 REVERSE LENGTH=483;; (*ITAG) Solyc05g009680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:3876692-3878140 transcript_region:SL2.40ch05:3876692..3878140- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00006226g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*ITAG) Solyc01g098070.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:80428282-80428749 transcript_region:SL2.40ch01:80428282..80428749- go_terms:GO:0005634 functional_description:"MADS-box family protein (AHRD V1 *-*- D7LH07_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00006226g0007.1 protein AED:0.25 eAED:0.31 QI:0|0.22|0.4|0.9|1|1|10|0|662; (*SWP) sp|Q7XUF4|CDKG2_ORYSJ (e_value=1e-148) Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2;; (*TAIR) AT1G67580.2 (e_value=8e-168) | Symbols: | Protein kinase superfamily protein | chr1:25327727-25330965 REVERSE LENGTH=752;; (*ITAG) Solyc05g014760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8917405-8920972 transcript_region:SL2.40ch05:8917405..8920972+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006226g0014.1 protein AED:0.05 eAED:0.05 QI:385|1|1|1|0.33|0.25|4|329|516; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=0.0) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc05g055840.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64469515-64471198 transcript_region:SL2.40ch05:64469515..64471198- go_terms:GO:0015020 functional_description:"Glucosyltransferase (AHRD V1 ***- A7M6J0_DIACA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00015391g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.87|0.66|1|1|1|9|30|553; (*SWP) sp|Q39032|PLCD1_ARATH (e_value=0.0) Phosphoinositide phospholipase C 1 OS=Arabidopsis thaliana GN=PLC1 PE=2 SV=1;; (*TAIR) AT5G58670.1 (e_value=0.0) | Symbols: ATPLC1, ATPLC, PLC1 | phospholipase C1 | chr5:23704457-23706751 REVERSE LENGTH=561;; (*ITAG) Solyc06g082000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44243033-44246274 transcript_region:SL2.40ch06:44243033..44246274+ go_terms:GO:0004435 functional_description:"1-phosphatidylinositol-4 5-bisphosphate phosphodiesterase (Phosphoinositide-specific phospholipase c) (AHRD V1 **** O49950_SOLTU); contains Interpro domain(s) IPR001711 Phospholipase C, phosphatidylinositol-specific, Y domain IPR018029 C2 membrane targeting protein IPR000909 Phospholipase C, phosphatidylinositol-specific , X region "; GO:0004435 NbS00030478g0007.1 protein AED:0.45 eAED:0.54 QI:0|0|0.25|1|0|0.25|4|0|144; (*TAIR) AT1G55535.1 (e_value=4e-41) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20732081-20733802 REVERSE LENGTH=260;; (*ITAG) Solyc01g050070.2.1 (e_value=3e-78) genomic_reference:SL2.40ch01 gene_region:43398830-43421486 transcript_region:SL2.40ch01:43398830..43421486- functional_description:"Genomic DNA chromosome 3 P1 clone MRP15 (AHRD V1 *-*- Q9LJF0_ARATH)"; NbS00000180g0009.1 protein AED:0.14 eAED:0.14 QI:36|0.9|0.90|1|0.7|0.81|11|421|519; (*SWP) sp|Q147G5|CCA22_ARATH (e_value=3e-147) Cyclin-A2-2 OS=Arabidopsis thaliana GN=CYCA2-2 PE=2 SV=1;; (*TAIR) AT5G11300.1 (e_value=3e-148) | Symbols: CYC3B, CYC2BAT, CYCA2;2 | mitotic-like cyclin 3B from Arabidopsis | chr5:3601811-3604466 REVERSE LENGTH=436;; (*ITAG) Solyc06g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37492237-37497897 transcript_region:SL2.40ch06:37492237..37497897+ go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 *-** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00000180g0010.1 protein AED:0.18 eAED:0.18 QI:50|0.33|0.25|0.75|0.33|0|4|0|531; (*SWP) sp|Q93YV6|2A5I_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1;; (*TAIR) AT5G25510.1 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr5:8882728-8884325 REVERSE LENGTH=500;; (*ITAG) Solyc06g065690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37502785-37506004 transcript_region:SL2.40ch06:37502785..37506004- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00000180g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|146; (*ITAG) Solyc12g043140.1.1 (e_value=7e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44266393-44269129 transcript_region:SL2.40ch12:44266393..44269129- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00000180g0004.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|113 NbS00018467g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|80 NbS00018467g0002.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|122; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=6e-28) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=4e-29) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc02g076720.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:36422621-36428170 transcript_region:SL2.40ch02:36422621..36428170- go_terms:GO:0004642 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 **** A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0004642 NbS00018467g0114.1 protein AED:0.03 eAED:0.03 QI:535|0.69|0.64|1|0.53|0.5|14|0|2011 NbS00018467g0113.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|110 NbS00018467g0115.1 protein AED:0.30 eAED:0.68 QI:0|0|0|1|0|0|2|0|126 NbS00021168g0012.1 protein AED:0.17 eAED:0.17 QI:268|1|1|1|0.63|0.58|12|626|585; (*SWP) sp|Q1GJX8|ENGB_SILST (e_value=8e-48) Probable GTP-binding protein EngB OS=Silicibacter sp. (strain TM1040) GN=engB PE=3 SV=1;; (*TAIR) AT5G58370.2 (e_value=2e-176) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23593358-23595645 FORWARD LENGTH=465;; (*ITAG) Solyc06g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1211626-1217325 transcript_region:SL2.40ch06:1211626..1217325- go_terms:GO:0000917,GO:0005622 functional_description:"GTP-binding protein engB (AHRD V1 *-*- ENGB_CAUCR); contains Interpro domain(s) IPR019987 GTP-binding protein, ribosome biogenesis, YsxC "; GO:0000917,GO:0005622 NbS00021168g0003.1 protein AED:0.19 eAED:0.19 QI:14|1|1|1|1|1|2|371|148; (*TAIR) AT5G58375.1 (e_value=2e-20) | Symbols: | Methyltransferase-related protein | chr5:23596369-23596705 FORWARD LENGTH=85; NbS00026841g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.6|0.5|1|0.6|0.83|6|0|243; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=2e-70) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=1e-71) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc07g021630.2.1 (e_value=4e-91) genomic_reference:SL2.40ch07 gene_region:20382871-20389446 transcript_region:SL2.40ch07:20382871..20389446- go_terms:GO:0004084 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 **** Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0004084 NbS00010050g0008.1 protein AED:0.26 eAED:0.27 QI:0|0.33|0|1|0.33|0.5|4|0|602; (*SWP) sp|Q9SKH2|Y2369_ARATH (e_value=1e-162) BTB/POZ domain-containing protein At2g13690 OS=Arabidopsis thaliana GN=PRL1-IFG PE=2 SV=2;; (*TAIR) AT2G13690.1 (e_value=8e-164) | Symbols: | PRLI-interacting factor, putative | chr2:5706704-5708895 REVERSE LENGTH=544;; (*ITAG) Solyc11g005950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:762421-766211 transcript_region:SL2.40ch11:762421..766211+ go_terms:GO:0005515 functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00022442g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.90|0.75|1|1|1|12|273|1741; (*SWP) sp|P34756|FAB1_YEAST (e_value=5e-74) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT4G33240.2 (e_value=0.0) | Symbols: FAB1A | 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases | chr4:16029504-16037278 REVERSE LENGTH=1756;; (*ITAG) Solyc05g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2590255-2598199 transcript_region:SL2.40ch05:2590255..2598199+ go_terms:GO:0044267,GO:0008270,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 *--- D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0044267,GO:0008270,GO:0046488 NbS00022442g0007.1 protein AED:0.32 eAED:0.33 QI:232|0|0.5|1|1|1|2|0|227; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=1e-43) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT2G01340.1 (e_value=2e-56) | Symbols: At17.1 | Encodes a protein whose expression is responsive to nematode infection. | chr2:164014-165068 FORWARD LENGTH=215;; (*ITAG) Solyc05g008210.2.1 (e_value=1e-99) genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)"; NbS00023584g0006.1 protein AED:0.15 eAED:0.20 QI:0|0.6|0.56|0.87|0.8|0.81|16|0|677; (*SWP) sp|Q8BMD7|MORC4_MOUSE (e_value=5e-45) MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2;; (*TAIR) AT5G50780.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc01g009920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:4490206-4495395 transcript_region:SL2.40ch01:4490206..4495395- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbC25948571g0004.1 protein AED:0.48 eAED:0.48 QI:68|0|0|1|1|0.5|2|0|37 NbS00046648g0002.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|1|1|2|0|70 NbS00034646g0003.1 protein AED:0.11 eAED:0.11 QI:211|1|0.83|1|1|1|6|0|518; (*SWP) sp|Q6R0H1|LHY_ARATH (e_value=5e-28) Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2;; (*TAIR) AT5G17300.1 (e_value=1e-49) | Symbols: RVE1 | Homeodomain-like superfamily protein | chr5:5690435-5692435 REVERSE LENGTH=387;; (*ITAG) Solyc02g036370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21309276-21311945 transcript_region:SL2.40ch02:21309276..21311945- go_terms:GO:0003700 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-* A1DR85_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00011440g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.91|0.69|1|1|1|13|0|394; (*TAIR) AT1G67850.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404;; (*ITAG) Solyc05g013650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6953265-6955654 transcript_region:SL2.40ch05:6953265..6955654- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00011440g0007.1 protein AED:0.30 eAED:0.32 QI:0|0.87|0.55|1|0.87|0.88|9|0|608; (*TAIR) AT1G67840.1 (e_value=0.0) | Symbols: CSK | chloroplast sensor kinase | chr1:25434156-25436839 FORWARD LENGTH=611;; (*ITAG) Solyc05g013670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6973420-6980126 transcript_region:SL2.40ch05:6973420..6980126- go_terms:GO:0005524,GO:0016301 functional_description:"ATP binding protein (AHRD V1 **** B6SY20_MAIZE); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524,GO:0016301 NbS00018561g0002.1 protein AED:0.05 eAED:0.05 QI:202|0.5|0.33|1|1|1|3|0|131 NbS00021404g0009.1 protein AED:0.19 eAED:0.19 QI:75|1|1|1|1|1|7|528|532; (*TAIR) AT5G39590.1 (e_value=0.0) | Symbols: | TLD-domain containing nucleolar protein | chr5:15851483-15853768 FORWARD LENGTH=542;; (*ITAG) Solyc04g081230.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62812864-62818051 transcript_region:SL2.40ch04:62812864..62818051- functional_description:"L(3)82Fd isoform G (AHRD V1 *--- Q8MSQ5_DROME); contains Interpro domain(s) IPR006571 TLDc "; NbS00021404g0008.1 protein AED:0.24 eAED:0.25 QI:0|0.76|0.78|1|1|1|14|269|747; (*SWP) sp|P93024|ARFE_ARATH (e_value=0.0) Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3;; (*TAIR) AT1G19850.1 (e_value=0.0) | Symbols: MP, ARF5, IAA24 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr1:6887353-6891182 FORWARD LENGTH=902;; (*ITAG) Solyc04g081240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62818343-62823877 transcript_region:SL2.40ch04:62818343..62823877- go_terms:GO:0005515,GO:0010843 functional_description:"Auxin response factor 5 (AHRD V1 ***- D9IVB5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005515,GO:0010843 NbS00021404g0007.1 protein AED:0.00 eAED:0.00 QI:114|1|1|1|1|1|2|25|128; (*TAIR) AT5G39600.1 (e_value=5e-73) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:15854188-15854771 REVERSE LENGTH=127;; (*ITAG) Solyc04g081220.2.1 (e_value=2e-91) genomic_reference:SL2.40ch04 gene_region:62809677-62812674 transcript_region:SL2.40ch04:62809677..62812674+ functional_description:"Genomic DNA chromosome 5 P1 clone MIJ24 (AHRD V1 ***- Q9FKA2_ARATH); contains Interpro domain(s) IPR019716 Ribosomal protein L53, mitochondrial "; NbS00005219g0010.1 protein AED:0.20 eAED:0.22 QI:553|0.62|0.66|1|0.37|0.44|9|329|369; (*SWP) sp|Q9C958|SRK2B_ARATH (e_value=2e-169) Serine/threonine-protein kinase SRK2B OS=Arabidopsis thaliana GN=SRK2B PE=1 SV=1;; (*TAIR) AT1G60940.2 (e_value=1e-170) | Symbols: SNRK2-10, SNRK2.10, SRK2B | SNF1-related protein kinase 2.10 | chr1:22439398-22441896 REVERSE LENGTH=361;; (*ITAG) Solyc01g103940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84178144-84182461 transcript_region:SL2.40ch01:84178144..84182461+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00005219g0009.1 protein AED:0.25 eAED:0.27 QI:65|0.6|0.72|1|0.6|0.54|11|463|579; (*SWP) sp|Q97LQ9|THIE_CLOAB (e_value=4e-53) Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=thiE PE=3 SV=1;; (*TAIR) AT1G22940.1 (e_value=0.0) | Symbols: TH1, TH-1, THIE | thiamin biosynthesis protein, putative | chr1:8122384-8124908 FORWARD LENGTH=522;; (*ITAG) Solyc01g103950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84184010-84191008 transcript_region:SL2.40ch01:84184010..84191008- go_terms:GO:0008152,GO:0009228 functional_description:"Thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase (AHRD V1 **-- A9NB66_COXBR); contains Interpro domain(s) IPR004399 Phosphomethylpyrimidine kinase type-2 "; GO:0008152,GO:0009228 NbS00012932g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|4|0|158; (*ITAG) Solyc01g067970.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69400119-69400415 transcript_region:SL2.40ch01:69400119..69400415+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028150g0003.1 protein AED:0.15 eAED:0.15 QI:327|0.87|0.88|1|0.87|0.77|9|256|565; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=1e-91) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT2G29990.1 (e_value=0.0) | Symbols: NDA2 | alternative NAD(P)H dehydrogenase 2 | chr2:12793562-12795913 REVERSE LENGTH=508;; (*ITAG) Solyc02g078900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38108392-38113405 transcript_region:SL2.40ch02:38108392..38113405- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00006516g0001.1 protein AED:0.06 eAED:0.07 QI:264|0|0.5|1|0|0.5|2|0|509; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=1e-114) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT2G23180.1 (e_value=7e-165) | Symbols: CYP96A1 | cytochrome P450, family 96, subfamily A, polypeptide 1 | chr2:9874953-9876503 FORWARD LENGTH=516;; (*ITAG) Solyc10g080870.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:61381618-61384584 transcript_region:SL2.40ch10:61381618..61384584+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006516g0005.1 protein AED:0.46 eAED:0.46 QI:177|0.5|0.33|1|0|0.33|3|84|51 NbS00000103g0009.1 protein AED:0.11 eAED:0.11 QI:102|1|1|1|1|1|6|104|382; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=7e-74) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=1e-165) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g080990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61500614-61502344 transcript_region:SL2.40ch10:61500614..61502344+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY62_ARAKO); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00000103g0010.1 protein AED:0.14 eAED:0.15 QI:85|0.83|0.71|1|0.83|0.71|7|0|434; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-73) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=8e-165) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g080990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61500614-61502344 transcript_region:SL2.40ch10:61500614..61502344+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY62_ARAKO); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00035386g0006.1 protein AED:0.34 eAED:0.37 QI:238|0.83|0.76|1|0.5|0.69|13|0|464; (*SWP) sp|Q0WQG8|GTG2_ARATH (e_value=0.0) GPCR-type G protein 2 OS=Arabidopsis thaliana GN=GTG2 PE=1 SV=2;; (*TAIR) AT4G27630.2 (e_value=0.0) | Symbols: GTG2 | GPCR-type G protein 2 | chr4:13791980-13797033 REVERSE LENGTH=467;; (*ITAG) Solyc07g045330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55749175-55760148 transcript_region:SL2.40ch07:55749175..55760148+ go_terms:GO:0051020 functional_description:"Golgi pH regulator (AHRD V1 **-- GPHR_CHICK); contains Interpro domain(s) IPR015672 G-protein coupled receptor 89-related "; GO:0051020 NbS00017092g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.87|1|1|1|8|0|645; (*TAIR) AT3G13600.1 (e_value=0.0) | Symbols: | calmodulin-binding family protein | chr3:4445102-4447383 FORWARD LENGTH=605;; (*ITAG) Solyc10g080640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61200494-61203396 transcript_region:SL2.40ch10:61200494..61203396+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 *--* B6U0B7_MAIZE)"; GO:0005516 NbS00017092g0019.1 protein AED:0.05 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|268; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=6e-23) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=5e-24) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc10g080650.1.1 (e_value=1e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61206337-61207631 transcript_region:SL2.40ch10:61206337..61207631+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017092g0018.1 protein AED:0.26 eAED:0.45 QI:523|0|0.2|0.8|0.25|0.2|5|0|127 NbS00017092g0006.1 protein AED:0.39 eAED:0.56 QI:0|0|0|0.75|1|1|4|0|93; (*SWP) sp|P46302|RS28_MAIZE (e_value=4e-32) 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1;; (*TAIR) AT5G64140.1 (e_value=3e-33) | Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64;; (*ITAG) Solyc10g078630.1.1 (e_value=7e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbS00017092g0021.1 protein AED:0.21 eAED:0.21 QI:171|1|1|1|0.83|0.71|7|349|212; (*SWP) sp|Q9FK59|IF4E3_ARATH (e_value=4e-117) Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1;; (*TAIR) AT5G18110.1 (e_value=3e-118) | Symbols: NCBP | novel cap-binding protein | chr5:5989105-5990588 REVERSE LENGTH=221;; (*ITAG) Solyc10g080660.1.1 (e_value=3e-145) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61208446-61211985 transcript_region:SL2.40ch10:61208446..61211985- go_terms:GO:0005737 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- A6XJR1_PIG); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0005737 NbS00017092g0008.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|95; (*ITAG) Solyc03g093100.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00017092g0020.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|81 NbS00003757g0010.1 protein AED:0.06 eAED:0.06 QI:64|1|1|1|1|1|2|264|614; (*SWP) sp|Q3E991|Y5269_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At5g20690 OS=Arabidopsis thaliana GN=At5g20690 PE=2 SV=4;; (*TAIR) AT3G42880.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:14954587-14956577 FORWARD LENGTH=633;; (*ITAG) Solyc05g025780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:36714988-36717350 transcript_region:SL2.40ch05:36714988..36717350+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00003757g0009.1 protein AED:0.05 eAED:0.14 QI:0|0|0|1|1|1|2|0|225; (*TAIR) AT1G72490.1 (e_value=6e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc07g042100.2.1 (e_value=1e-54) genomic_reference:SL2.40ch07 gene_region:52404554-52405939 transcript_region:SL2.40ch07:52404554..52405939+ functional_description:"F1L3.5 (AHRD V1 ***- Q9LNR9_ARATH)"; NbS00036272g0003.1 protein AED:0.01 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|435; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=5e-51) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=3e-61) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=3e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00036272g0102.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|488 NbS00050599g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|83; (*TAIR) AT1G75250.1 (e_value=2e-33) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28245073-28245453 REVERSE LENGTH=126;; (*ITAG) Solyc12g089190.1.1 (e_value=8e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62746778-62748217 transcript_region:SL2.40ch12:62746778..62748217- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00022552g0006.1 protein AED:0.17 eAED:0.18 QI:309|0.72|0.75|1|0.81|0.83|12|0|325; (*SWP) sp|Q5XEZ1|B3GT9_ARATH (e_value=4e-155) Probable beta-1,3-galactosyltransferase 9 OS=Arabidopsis thaliana GN=B3GALT9 PE=2 SV=1;; (*TAIR) AT2G25300.1 (e_value=3e-156) | Symbols: | Galactosyltransferase family protein | chr2:10771922-10774156 REVERSE LENGTH=346;; (*ITAG) Solyc08g029170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22869439-22877497 transcript_region:SL2.40ch08:22869439..22877497- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00022552g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|100; (*SWP) sp|Q9SK39|SBP3_ARATH (e_value=1e-54) Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1;; (*TAIR) AT2G24940.1 (e_value=1e-55) | Symbols: AtMAPR2, MAPR2 | membrane-associated progesterone binding protein 2 | chr2:10609447-10609749 FORWARD LENGTH=100;; (*ITAG) Solyc08g029160.1.1 (e_value=4e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:22866418-22866720 transcript_region:SL2.40ch08:22866418..22866720+ go_terms:GO:0008083 functional_description:"Membrane-associated progesterone receptor component 2 (AHRD V1 **-- B6K303_SCHJY); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0008083 NbS00012398g0005.1 protein AED:0.00 eAED:0.00 QI:33|1|1|1|0|0|3|36|27 NbS00012398g0007.1 protein AED:0.23 eAED:0.23 QI:163|1|1|1|1|1|11|286|310; (*SWP) sp|Q8VYI3|ECH2_ARATH (e_value=2e-130) Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2 PE=1 SV=1;; (*TAIR) AT1G76150.1 (e_value=2e-131) | Symbols: ECH2, ATECH2 | enoyl-CoA hydratase 2 | chr1:28575236-28577637 REVERSE LENGTH=309;; (*ITAG) Solyc12g094450.1.1 (e_value=8e-172) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63006889-63010224 transcript_region:SL2.40ch12:63006889..63010224- go_terms:GO:0006508,GO:0008152 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B4FP93_MAIZE); contains Interpro domain(s) IPR002539 MaoC-like dehydratase "; GO:0006508,GO:0008152 NbS00003829g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0|0.33|3|0|280; (*TAIR) AT5G09530.1 (e_value=2e-11) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:2960080-2961192 REVERSE LENGTH=370;; (*ITAG) Solyc12g044710.1.1 (e_value=6e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00005453g0004.1 protein AED:0.10 eAED:0.10 QI:176|1|1|1|1|0.66|3|0|382; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=3e-40) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT3G25290.2 (e_value=1e-148) | Symbols: | Auxin-responsive family protein | chr3:9208955-9210353 FORWARD LENGTH=393;; (*ITAG) Solyc09g056360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:44441347-44443453 transcript_region:SL2.40ch09:44441347..44443453+ functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00037121g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|69 NbS00030899g0004.1 protein AED:0.06 eAED:0.06 QI:160|1|1|1|1|1|7|210|292; (*SWP) sp|Q5ZLS7|GLYR1_CHICK (e_value=1e-82) Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1;; (*TAIR) AT3G25530.1 (e_value=5e-160) | Symbols: GHBDH, ATGHBDH, GLYR1, GR1 | glyoxylate reductase 1 | chr3:9271949-9273514 REVERSE LENGTH=289;; (*ITAG) Solyc09g018790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:17001628-17004264 transcript_region:SL2.40ch09:17001628..17004264- go_terms:GO:0003858 functional_description:"Gamma hydroxybutyrate dehydrogenase-like protein (AHRD V1 **** Q84VC8_ORYSJ); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0003858 NbS00030899g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|237|162; (*SWP) sp|Q9ZVE0|ORN_ARATH (e_value=2e-71) Oligoribonuclease OS=Arabidopsis thaliana GN=At2g26970 PE=2 SV=2;; (*TAIR) AT2G26970.2 (e_value=9e-73) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:11509908-11511903 REVERSE LENGTH=218;; (*ITAG) Solyc06g082810.2.1 (e_value=2e-90) genomic_reference:SL2.40ch06 gene_region:44774970-44777854 transcript_region:SL2.40ch06:44774970..44777854+ go_terms:GO:0000175 functional_description:"Oligoribonuclease (AHRD V1 ***- B6U6N3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0000175 NbC25545448g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|91; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=7e-35) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=5e-36) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=2e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00027670g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|232; (*TAIR) AT2G16030.1 (e_value=4e-58) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:6974196-6974891 REVERSE LENGTH=231;; (*ITAG) Solyc02g063460.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:30136824-30137492 transcript_region:SL2.40ch02:30136824..30137492+ functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00027670g0006.1 protein AED:0.24 eAED:0.24 QI:614|0.93|0.93|1|1|1|16|163|536; (*SWP) sp|P50433|GLYM_SOLTU (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G37930.1 (e_value=0.0) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517;; (*ITAG) Solyc02g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47400296-47406791 transcript_region:SL2.40ch02:47400296..47406791+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** C6ZJZ0_SOYBN); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00014114g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|168; (*TAIR) AT2G22180.1 (e_value=2e-13) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:9428969-9429844 FORWARD LENGTH=291;; (*ITAG) Solyc05g051890.1.1 (e_value=5e-76) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:61440361-61441149 transcript_region:SL2.40ch05:61440361..61441149- functional_description:"Harpin-induced protein-related-like (AHRD V1 **-- Q8RUR5_ORYSJ)"; NbS00014114g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.42|1|0.66|0.71|7|0|287; (*SWP) sp|Q5HZ05|TPPJ_ARATH (e_value=2e-128) Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1;; (*TAIR) AT5G65140.1 (e_value=2e-129) | Symbols: TPPJ | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:26019878-26022077 REVERSE LENGTH=370;; (*ITAG) Solyc04g054930.2.1 (e_value=1e-140) genomic_reference:SL2.40ch04 gene_region:52586264-52589099 transcript_region:SL2.40ch04:52586264..52589099- go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose-6-phosphate phosphatase-like protein (AHRD V1 ***- Q9LX18_ARATH); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00014114g0003.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|113; (*SWP) sp|Q8H6L7|PHLB_PHLPR (e_value=5e-20) Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1;; (*TAIR) AT4G08685.1 (e_value=6e-32) | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159;; (*ITAG) Solyc04g054810.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00059392g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|146; (*SWP) sp|P51414|RL261_ARATH (e_value=2e-61) 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2;; (*TAIR) AT3G49910.1 (e_value=2e-62) | Symbols: | Translation protein SH3-like family protein | chr3:18504311-18504751 FORWARD LENGTH=146;; (*ITAG) Solyc02g064670.1.1 (e_value=3e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:30328162-30328602 transcript_region:SL2.40ch02:30328162..30328602+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L26-like 1 (AHRD V1 ***- B7TJ03_PIG); contains Interpro domain(s) IPR005756 Ribosomal protein L26, eukaryotic/archaeal "; GO:0003735,GO:0003723 NbS00059392g0002.1 protein AED:0.41 eAED:0.41 QI:47|0.5|0.33|1|1|1|3|0|190; (*SWP) sp|Q9FJX3|VDAC2_ARATH (e_value=1e-44) Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=VDAC2 PE=1 SV=1;; (*TAIR) AT5G67500.1 (e_value=9e-46) | Symbols: VDAC2, ATVDAC2 | voltage dependent anion channel 2 | chr5:26935223-26937123 FORWARD LENGTH=276;; (*ITAG) Solyc02g092440.2.1 (e_value=2e-73) genomic_reference:SL2.40ch02 gene_region:48072629-48076554 transcript_region:SL2.40ch02:48072629..48076554- go_terms:GO:0008308 functional_description:"Mitochondrial porin (Voltage-dependent anion channel) outer membrane protein (AHRD V1 **** C4R1Z2_PICPG); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00015135g0016.1 protein AED:0.14 eAED:0.14 QI:217|0.75|0.88|1|0.75|0.77|9|358|270; (*SWP) sp|Q8H112|PGL1A_ARATH (e_value=4e-99) PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1;; (*TAIR) AT4G22890.2 (e_value=3e-100) | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157-12009175 FORWARD LENGTH=324;; (*ITAG) Solyc08g007770.2.1 (e_value=2e-141) genomic_reference:SL2.40ch08 gene_region:2287091-2290348 transcript_region:SL2.40ch08:2287091..2290348+ functional_description:"PGR5-like protein 1A, chloroplastic (AHRD V1 ***- PGL1A_ARATH)"; NbS00015135g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0.5|0.66|3|0|254; (*SWP) sp|Q9LN94|EXPA7_ARATH (e_value=9e-114) Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1;; (*TAIR) AT1G12560.1 (e_value=7e-115) | Symbols: ATEXPA7, EXP7, ATEXP7, ATHEXP ALPHA 1.26, EXPA7 | expansin A7 | chr1:4276557-4277693 FORWARD LENGTH=262;; (*ITAG) Solyc08g080060.2.1 (e_value=2e-141) genomic_reference:SL2.40ch08 gene_region:60562889-60564536 transcript_region:SL2.40ch08:60562889..60564536+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-like protein (AHRD V1 ***- Q0WT83_ARATH); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00015135g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.88|0.8|0.9|1|0.8|10|144|692; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=0.0) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.1 (e_value=0.0) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=699;; (*ITAG) Solyc08g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2311212-2317511 transcript_region:SL2.40ch08:2311212..2317511- go_terms:GO:0055085 functional_description:"Transporter major facilitator family (AHRD V1 *--- B1EKR1_9ESCH); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00015135g0014.1 protein AED:0.16 eAED:0.16 QI:309|1|0.91|1|0.90|0.91|12|0|462; (*SWP) sp|P54873|HMCS_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=0.0) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc08g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2294082-2299193 transcript_region:SL2.40ch08:2294082..2299193- go_terms:GO:0004421 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 **** A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal IPR000590 Hydroxymethylglutaryl-coenzyme A synthase, active site "; GO:0004421 NbS00052837g0001.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|1050; (*SWP) sp|Q9FNG8|PP366_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1;; (*TAIR) AT5G06400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1955959-1959051 FORWARD LENGTH=1030;; (*ITAG) Solyc01g006850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1417373-1420666 transcript_region:SL2.40ch01:1417373..1420666+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012195g0005.1 protein AED:0.29 eAED:0.30 QI:214|0.63|0.66|1|0.81|0.83|12|0|444; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=5e-174) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=3e-175) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbC24462717g0001.1 protein AED:0.00 eAED:0.00 QI:21|-1|0|1|-1|1|1|0|145; (*ITAG) Solyc07g065520.2.1 (e_value=7e-27) genomic_reference:SL2.40ch07 gene_region:64464292-64467536 transcript_region:SL2.40ch07:64464292..64467536- go_terms:GO:0003676,GO:0000166 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *--- Q9XEL4_PICGL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00042912g0002.1 protein AED:0.21 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|133; (*SWP) sp|P18260|ATPAM_HELAN (e_value=1e-45) ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=3e-46) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00042912g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|320; (*SWP) sp|O64641|CXE9_ARATH (e_value=3e-125) Probable carboxylesterase 9 OS=Arabidopsis thaliana GN=CXE9 PE=2 SV=1;; (*TAIR) AT2G45610.1 (e_value=2e-126) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18791463-18792437 FORWARD LENGTH=324;; (*ITAG) Solyc01g091410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76798424-76800244 transcript_region:SL2.40ch01:76798424..76800244- go_terms:GO:0004091 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOLC); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00042912g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|96; (*SWP) sp|O81322|LBD31_ARATH (e_value=1e-44) LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2;; (*TAIR) AT4G00210.1 (e_value=8e-46) | Symbols: LBD31 | LOB domain-containing protein 31 | chr4:85693-86888 REVERSE LENGTH=220;; (*ITAG) Solyc01g091400.2.1 (e_value=5e-53) genomic_reference:SL2.40ch01 gene_region:76793684-76795990 transcript_region:SL2.40ch01:76793684..76795990- go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 31 (AHRD V1 *-*- D7M5R7_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00050483g0006.1 protein AED:0.13 eAED:0.24 QI:0|0.25|0.2|0.8|0.25|0.2|5|0|354; (*SWP) sp|Q9SN23|LBD38_ARATH (e_value=4e-69) LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1;; (*TAIR) AT3G49940.1 (e_value=3e-70) | Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247;; (*ITAG) Solyc02g092550.2.1 (e_value=3e-93) genomic_reference:SL2.40ch02 gene_region:48182706-48183792 transcript_region:SL2.40ch02:48182706..48183792+ functional_description:"LOB domain protein 38 (AHRD V1 ***- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00041919g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|102; (*ITAG) Solyc00g181250.2.1 (e_value=8e-53) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041919g0008.1 protein AED:0.39 eAED:0.42 QI:131|0.71|0.87|1|0.71|1|8|368|354; (*SWP) sp|Q920N2|BPL1_MOUSE (e_value=1e-35) Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1;; (*TAIR) AT2G25710.2 (e_value=1e-129) | Symbols: HCS1 | holocarboxylase synthase 1 | chr2:10952719-10955061 FORWARD LENGTH=367;; (*ITAG) Solyc11g013200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6106571-6116941 transcript_region:SL2.40ch11:6106571..6116941- go_terms:GO:0006464 functional_description:"Biotin protein ligase (AHRD V1 ***- Q16W46_AEDAE); contains Interpro domain(s) IPR004408 Biotin--acetyl-CoA-carboxylase ligase "; GO:0006464 NbS00011418g0011.1 protein AED:0.25 eAED:0.25 QI:2|0.5|0.33|0.66|1|0.66|3|0|421; (*TAIR) AT1G48450.1 (e_value=8e-167) | Symbols: | Protein of unknown function (DUF760) | chr1:17908746-17910345 REVERSE LENGTH=423;; (*ITAG) Solyc03g098000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53805392-53808210 transcript_region:SL2.40ch03:53805392..53808210+ functional_description:"At1g32160/F3C3_6 (AHRD V1 ***- Q9FVR1_ARATH); contains Interpro domain(s) IPR008479 Protein of unknown function DUF760 "; NbS00011418g0010.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|60 NbS00011418g0001.1 protein AED:0.25 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|113; (*SWP) sp|Q558Z3|SSU72_DICDI (e_value=3e-28) RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1;; (*TAIR) AT1G73820.1 (e_value=2e-62) | Symbols: | Ssu72-like family protein | chr1:27755740-27757158 REVERSE LENGTH=193;; (*ITAG) Solyc03g097990.2.1 (e_value=1e-74) genomic_reference:SL2.40ch03 gene_region:53797571-53802108 transcript_region:SL2.40ch03:53797571..53802108- go_terms:GO:0042802,GO:0004725 functional_description:"RNA polymerase II subunit A C-terminal domain phosphatase SSU72 (AHRD V1 **** C1BX60_ESOLU); contains Interpro domain(s) IPR006811 RNA polymerase II subunit A "; GO:0042802,GO:0004725 NbS00055663g0005.1 protein AED:0.00 eAED:0.00 QI:81|1|1|1|1|1|2|878|112; (*ITAG) Solyc08g005370.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:279332-282745 transcript_region:SL2.40ch08:279332..282745+ functional_description:"F-box family protein (AHRD V1 *-*- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020228g0001.1 protein AED:0.18 eAED:0.18 QI:471|0|0.5|1|0|0.5|2|0|133; (*TAIR) AT4G22000.1 (e_value=3e-54) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:11659810-11660202 REVERSE LENGTH=130;; (*ITAG) Solyc12g042700.1.1 (e_value=3e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43507878-43509860 transcript_region:SL2.40ch12:43507878..43509860+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020228g0005.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|120 NbS00020228g0010.1 protein AED:0.35 eAED:0.46 QI:0|0|0|1|0|0|3|0|250; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=4e-16) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=3e-17) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc06g006040.1.1 (e_value=7e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00020228g0011.1 protein AED:0.57 eAED:0.65 QI:0|0|0|0.75|0|0|4|0|164; (*ITAG) Solyc02g068830.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33321008-33323344 transcript_region:SL2.40ch02:33321008..33323344- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00020228g0009.1 protein AED:0.42 eAED:0.67 QI:0|0|0|1|0|0|2|0|127; (*ITAG) Solyc02g068820.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018356g0003.1 protein AED:0.13 eAED:0.18 QI:0|0|0|1|0|0|2|0|161; (*TAIR) AT1G13810.1 (e_value=3e-40) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:4734088-4735164 FORWARD LENGTH=303;; (*ITAG) Solyc10g081050.1.1 (e_value=5e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00027111g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|170 NbS00023578g0016.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|6|0|281; (*SWP) sp|Q9C9U4|MPK15_ARATH (e_value=4e-97) Mitogen-activated protein kinase 15 OS=Arabidopsis thaliana GN=MPK15 PE=2 SV=3;; (*TAIR) AT1G73670.1 (e_value=3e-98) | Symbols: ATMPK15, MPK15 | MAP kinase 15 | chr1:27700212-27703168 FORWARD LENGTH=576;; (*ITAG) Solyc05g008020.2.1 (e_value=4e-150) genomic_reference:SL2.40ch05 gene_region:2439987-2443704 transcript_region:SL2.40ch05:2439987..2443704+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00023578g0018.1 protein AED:0.27 eAED:0.31 QI:0|0.2|0.27|1|0.3|0.54|11|0|488; (*SWP) sp|Q9SXS2|SUT33_ARATH (e_value=0.0) Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2;; (*TAIR) AT1G23090.1 (e_value=0.0) | Symbols: AST91, SULTR3;3 | sulfate transporter 91 | chr1:8185238-8188954 REVERSE LENGTH=631;; (*ITAG) Solyc05g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2404490-2408988 transcript_region:SL2.40ch05:2404490..2408988+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00023578g0020.1 protein AED:0.18 eAED:0.19 QI:411|0.75|0.68|1|0.75|0.72|25|300|874; (*SWP) sp|Q54R62|UCKC_DICDI (e_value=8e-56) Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1;; (*TAIR) AT2G01460.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:206136-211765 FORWARD LENGTH=955;; (*ITAG) Solyc05g007990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2409481-2425202 transcript_region:SL2.40ch05:2409481..2425202- go_terms:GO:0016301 functional_description:"Uridine kinase (AHRD V1 *-** C3SA58_BRADI); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0016301 NbS00043059g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|530; (*SWP) sp|Q0WP85|PP150_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1;; (*TAIR) AT3G49730.1 (e_value=1e-64) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18445730-18447646 REVERSE LENGTH=638;; (*ITAG) Solyc10g049570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:41635720-41637285 transcript_region:SL2.40ch10:41635720..41637285+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJJ1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000206g0017.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|0.5|0.33|3|0|338; (*TAIR) AT1G05440.1 (e_value=2e-72) | Symbols: | C-8 sterol isomerases | chr1:1596374-1597843 REVERSE LENGTH=384;; (*ITAG) Solyc09g082180.2.1 (e_value=5e-170) genomic_reference:SL2.40ch09 gene_region:63386514-63387979 transcript_region:SL2.40ch09:63386514..63387979- go_terms:GO:0016020 functional_description:"Unknown Protein (AHRD V1)"; GO:0016020 NbS00000206g0015.1 protein AED:0.26 eAED:0.26 QI:84|1|1|1|0.6|0.83|6|302|250; (*TAIR) AT1G05430.1 (e_value=1e-18) | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1594227-1595731 REVERSE LENGTH=269;; (*ITAG) Solyc09g082160.2.1 (e_value=2e-135) genomic_reference:SL2.40ch09 gene_region:63374806-63382281 transcript_region:SL2.40ch09:63374806..63382281- functional_description:"Unknown Protein (AHRD V1)"; NbS00000206g0006.1 protein AED:0.27 eAED:0.29 QI:0|0.33|0|1|1|1|4|0|477; (*SWP) sp|O23337|PP311_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1;; (*TAIR) AT4G14820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8507794-8510038 REVERSE LENGTH=722;; (*ITAG) Solyc09g082170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63384146-63386475 transcript_region:SL2.40ch09:63384146..63386475+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBB4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00000206g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|214; (*SWP) sp|O23337|PP311_ARATH (e_value=1e-93) Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1;; (*TAIR) AT4G14820.1 (e_value=1e-94) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8507794-8510038 REVERSE LENGTH=722;; (*ITAG) Solyc09g082170.2.1 (e_value=2e-138) genomic_reference:SL2.40ch09 gene_region:63384146-63386475 transcript_region:SL2.40ch09:63384146..63386475+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBB4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00062043g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|1|1|0.77|0.7|10|375|275; (*SWP) sp|Q42564|APX3_ARATH (e_value=3e-156) L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1;; (*TAIR) AT4G35000.1 (e_value=2e-157) | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16665007-16667541 REVERSE LENGTH=287;; (*ITAG) Solyc01g111510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89495534-89500705 transcript_region:SL2.40ch01:89495534..89500705- go_terms:GO:0016688 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q8W4V7_CAPAN); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0016688 NbS00003188g0003.1 protein AED:0.19 eAED:0.20 QI:293|0.9|0.90|1|0.7|0.72|11|0|262; (*SWP) sp|Q8VZU2|SY132_ARATH (e_value=1e-61) Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1;; (*TAIR) AT5G08080.1 (e_value=7e-63) | Symbols: SYP132, ATSYP132 | syntaxin of plants 132 | chr5:2588532-2591106 FORWARD LENGTH=304;; (*ITAG) Solyc07g052470.2.1 (e_value=2e-118) genomic_reference:SL2.40ch07 gene_region:58286256-58294483 transcript_region:SL2.40ch07:58286256..58294483+ go_terms:GO:0008565,GO:0050544 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0008565,GO:0050544 NbS00011157g0014.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|0.66|3|0|139; (*SWP) sp|P81748|MIFH_TRITR (e_value=7e-15) Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2;; (*TAIR) AT5G57170.2 (e_value=3e-55) | Symbols: | Tautomerase/MIF superfamily protein | chr5:23162426-23163140 REVERSE LENGTH=116;; (*ITAG) Solyc07g008470.2.1 (e_value=5e-58) genomic_reference:SL2.40ch07 gene_region:3375701-3379146 transcript_region:SL2.40ch07:3375701..3379146- go_terms:GO:0004167 functional_description:"Macrophage migration inhibitory factor family protein (AHRD V1 ***- D7MMS4_ARALY); contains Interpro domain(s) IPR001398 Macrophage migration inhibitory factor "; GO:0004167 NbS00011157g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|0.5|0.66|3|285|672; (*SWP) sp|Q9LUC2|PP231_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1;; (*TAIR) AT3G14730.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4949385-4951346 REVERSE LENGTH=653;; (*ITAG) Solyc07g008480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3388127-3389659 transcript_region:SL2.40ch07:3388127..3389659- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L368_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00011157g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|0.66|0.5|0.33|3|0|86; (*ITAG) Solyc07g008450.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:3328517-3357899 transcript_region:SL2.40ch07:3328517..3357899- go_terms:GO:0005488 functional_description:"HEAT repeat-containing protein (AHRD V1 *-*- D3B2P5_POLPA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00011157g0013.1 protein AED:0.36 eAED:0.43 QI:0|0|0|0.2|0.88|0.7|10|0|668; (*ITAG) Solyc01g094740.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00011157g0008.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|98 NbS00012599g0004.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0|1|1|1|3|0|590; (*SWP) sp|Q9ZS97|AB8I_ARATH (e_value=0.0) UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1;; (*TAIR) AT4G04770.1 (e_value=0.0) | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding cassette protein 1 | chr4:2427998-2429785 REVERSE LENGTH=557;; (*ITAG) Solyc02g080440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39231799-39236517 transcript_region:SL2.40ch02:39231799..39236517+ go_terms:GO:0005515 functional_description:"FeS assembly protein SufB (AHRD V1 ***- Q3MG36_ANAVT); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB "; GO:0005515 NbS00044305g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|95 NbS00001631g0009.1 protein AED:0.04 eAED:0.04 QI:382|1|1|1|0.66|0.5|4|0|195; (*TAIR) AT5G61280.1 (e_value=4e-17) | Symbols: | Remorin family protein | chr5:24643625-24644910 REVERSE LENGTH=263;; (*ITAG) Solyc06g069590.2.1 (e_value=5e-80) genomic_reference:SL2.40ch06 gene_region:39732003-39733099 transcript_region:SL2.40ch06:39732003..39733099+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00001631g0006.1 protein AED:0.03 eAED:0.07 QI:0|0.75|0.4|0.8|1|1|5|0|417; (*SWP) sp|Q8GZ38|UNE10_ARATH (e_value=4e-39) Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2 SV=1;; (*TAIR) AT4G00050.1 (e_value=3e-40) | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17863-19848 FORWARD LENGTH=399;; (*ITAG) Solyc06g069600.1.1 (e_value=1e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39735370-39737463 transcript_region:SL2.40ch06:39735370..39737463+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor EB (AHRD V1 *-*- TFEB_MOUSE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00001631g0111.1 protein AED:0.20 eAED:0.20 QI:455|0.66|0.7|1|0.44|0.4|10|282|519 NbS00001631g0103.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|450 NbS00001631g0110.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.6|1|0.75|0.6|5|314|298 NbS00006221g0005.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0.66|1|4|0|389; (*SWP) sp|P0C8Q5|PP336_ARATH (e_value=6e-119) Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1;; (*TAIR) AT4G22760.1 (e_value=4e-120) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11960553-11962289 FORWARD LENGTH=578;; (*ITAG) Solyc10g006730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1190015-1191748 transcript_region:SL2.40ch10:1190015..1191748+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ME07_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006221g0002.1 protein AED:0.43 eAED:0.49 QI:0|0|0|1|1|1|2|0|211; (*SWP) sp|Q0IH40|DNLZ_XENLA (e_value=3e-17) DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1;; (*TAIR) AT3G54826.1 (e_value=7e-44) | Symbols: | Zim17-type zinc finger protein | chr3:20310354-20311652 FORWARD LENGTH=223;; (*ITAG) Solyc05g053250.2.1 (e_value=4e-86) genomic_reference:SL2.40ch05 gene_region:62536961-62539494 transcript_region:SL2.40ch05:62536961..62539494+ functional_description:"DNL zinc finger family protein (AHRD V1 ***- B6TQA5_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00030842g0008.1 protein AED:0.14 eAED:0.14 QI:138|1|1|1|1|1|8|253|717; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=1e-73) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G13690.1 (e_value=6e-168) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc04g079690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61649472-61653656 transcript_region:SL2.40ch04:61649472..61653656+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase 2 (AHRD V1 *-*- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000608g0110.1 protein AED:0.11 eAED:0.11 QI:217|1|1|1|1|1|5|243|442 NbS00030139g0010.1 protein AED:0.20 eAED:0.25 QI:770|0.7|0.45|1|0.2|0.18|11|0|414; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=3e-78) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.1 (e_value=2e-79) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=404;; (*ITAG) Solyc12g005880.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:514570-517761 transcript_region:SL2.40ch12:514570..517761+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00030139g0008.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.66|0|0|3|0|57 NbS00001459g0010.1 protein AED:0.22 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|381; (*SWP) sp|O14214|TRM10_SCHPO (e_value=1e-44) tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1;; (*TAIR) AT5G47680.1 (e_value=2e-109) | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19316329-19317467 REVERSE LENGTH=344;; (*ITAG) Solyc11g012760.1.1 (e_value=5e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5519964-5522711 transcript_region:SL2.40ch11:5519964..5522711- functional_description:"TRNA (Guanine-N1-)-methyltransferase (AHRD V1 ***- A2Q1R6_MEDTR); contains Interpro domain(s) IPR016653 tRNA (guanine-N(1)-)-methyltransferase, metazoa "; NbS00001459g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|275; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=2e-65) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=5e-67) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc05g005390.1.1 (e_value=5e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:311353-313456 transcript_region:SL2.40ch05:311353..313456+ go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-*- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00031558g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|271; (*ITAG) Solyc11g039800.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041222g0004.1 protein AED:0.12 eAED:0.12 QI:264|0.87|0.77|1|1|1|9|357|696; (*SWP) sp|Q8RWS6|FRO6_ARATH (e_value=0.0) Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1;; (*TAIR) AT5G49730.1 (e_value=0.0) | Symbols: ATFRO6, FRO6 | ferric reduction oxidase 6 | chr5:20201355-20204455 REVERSE LENGTH=738;; (*ITAG) Solyc01g102610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00023383g0011.1 protein AED:0.10 eAED:0.10 QI:131|0.94|0.94|1|0.35|0.27|18|182|523; (*SWP) sp|Q7XJJ7|FAAH_ARATH (e_value=1e-98) Fatty acid amide hydrolase OS=Arabidopsis thaliana GN=FAAH PE=1 SV=1;; (*TAIR) AT5G64440.1 (e_value=8e-100) | Symbols: AtFAAH, FAAH | fatty acid amide hydrolase | chr5:25766229-25770260 FORWARD LENGTH=607;; (*ITAG) Solyc01g106360.2.1 (e_value=3e-100) genomic_reference:SL2.40ch01 gene_region:86051299-86059178 transcript_region:SL2.40ch01:86051299..86059178+ go_terms:GO:0016884 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- C5FFK2_NANOT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0016884 NbS00023383g0003.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0|0.66|1|1|3|0|192; (*SWP) sp|P41891|GAR2_SCHPO (e_value=2e-11) Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gar2 PE=1 SV=2;; (*TAIR) AT3G55340.1 (e_value=5e-57) | Symbols: PHIP1 | phragmoplastin interacting protein 1 | chr3:20515672-20517832 FORWARD LENGTH=597;; (*ITAG) Solyc06g018110.2.1 (e_value=2e-120) genomic_reference:SL2.40ch06 gene_region:13436393-13441892 transcript_region:SL2.40ch06:13436393..13441892- go_terms:GO:0003729 functional_description:"RNA binding protein (AHRD V1 *--* B6TYA4_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003729 NbS00025389g0004.1 protein AED:0.27 eAED:0.28 QI:95|1|0.85|1|1|1|7|0|343; (*TAIR) AT1G73090.1 (e_value=2e-124) | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27488264-27490593 FORWARD LENGTH=306;; (*ITAG) Solyc06g063230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36324899-36329501 transcript_region:SL2.40ch06:36324899..36329501+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029243g0016.1 protein AED:0.03 eAED:0.06 QI:0|0.33|0|1|0.33|0|4|0|1395; (*TAIR) AT5G66820.1 (e_value=3e-14) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:26689097-26691110 FORWARD LENGTH=519;; (*ITAG) Solyc03g044620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:14175332-14181324 transcript_region:SL2.40ch03:14175332..14181324+ functional_description:"Transmembrane protein 131 (AHRD V1 *-*- D2V4H9_NAEGR)"; NbS00029243g0017.1 protein AED:0.19 eAED:0.20 QI:0|1|0|1|0|0|2|0|82; (*TAIR) AT4G37050.1 (e_value=9e-27) | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein 4 | chr4:17457261-17459642 REVERSE LENGTH=428;; (*ITAG) Solyc03g044710.2.1 (e_value=2e-42) genomic_reference:SL2.40ch03 gene_region:14360831-14365498 transcript_region:SL2.40ch03:14360831..14365498+ go_terms:GO:0004620 functional_description:"Patatin-like protein 3 (AHRD V1 ***- Q9FZ08_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0004620 NbS00029243g0019.1 protein AED:0.02 eAED:0.02 QI:353|1|1|1|0|0.33|3|98|262; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=2e-76) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23610.1 (e_value=1e-76) | Symbols: ATMES3, MES3 | methyl esterase 3 | chr2:10044410-10046403 REVERSE LENGTH=263;; (*ITAG) Solyc03g044790.2.1 (e_value=1e-164) genomic_reference:SL2.40ch03 gene_region:14505298-14507543 transcript_region:SL2.40ch03:14505298..14507543- go_terms:GO:0080031,GO:0080030 functional_description:"Alpha-hydroxynitrile lyase (AHRD V1 **-- O49897_MANES); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080031,GO:0080030 NbS00029243g0018.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0|0|3|0|153; (*TAIR) AT2G41120.1 (e_value=1e-46) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr2:17141454-17142419 REVERSE LENGTH=261;; (*ITAG) Solyc03g044630.1.1 (e_value=8e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14213399-14214823 transcript_region:SL2.40ch03:14213399..14214823- functional_description:"Conserved domain protein (AHRD V1 *-*- B4WN95_9SYNE); contains Interpro domain(s) IPR005500 Protein of unknown function DUF309 "; NbS00057300g0001.1 protein AED:0.11 eAED:0.11 QI:321|1|1|1|0|0|3|369|68 NbS00009839g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.5|4|61|808; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=7e-90) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-63) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00009839g0011.1 protein AED:0.29 eAED:0.72 QI:0|0|0|1|1|1|5|0|293; (*ITAG) Solyc06g008150.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00018942g0012.1 protein AED:0.19 eAED:0.19 QI:87|0.5|0.33|1|0.5|1|3|0|68; (*ITAG) Solyc01g109620.2.1 (e_value=6e-17) genomic_reference:SL2.40ch01 gene_region:88275740-88282020 transcript_region:SL2.40ch01:88275740..88282020- go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase subunit I (AHRD V1 **** D5BPB0_PUNMI); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0008137 NbS00018942g0008.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.33|1|0.6|0.5|6|0|448; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=5e-100) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=4e-101) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc10g051330.1.1 (e_value=4e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:47441251-47444002 transcript_region:SL2.40ch10:47441251..47444002+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018942g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|0|0|2|0|221; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=4e-53) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=3e-54) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc10g051370.1.1 (e_value=1e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:47497714-47498424 transcript_region:SL2.40ch10:47497714..47498424- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00018942g0011.1 protein AED:0.23 eAED:0.32 QI:0|0|0|1|0|0|2|0|94; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=6e-33) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=5e-28) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-34) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00018942g0010.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|0|0|2|0|64; (*SWP) sp|C0LGK4|Y2165_ARATH (e_value=2e-14) Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1;; (*TAIR) AT2G16250.1 (e_value=1e-15) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:7039682-7042933 REVERSE LENGTH=915;; (*ITAG) Solyc01g109650.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00038775g0008.1 protein AED:0.01 eAED:0.04 QI:0|1|0|1|1|1|2|0|205; (*TAIR) AT2G28420.1 (e_value=2e-86) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr2:12157946-12158500 FORWARD LENGTH=184;; (*ITAG) Solyc01g088010.1.1 (e_value=6e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74612628-74613407 transcript_region:SL2.40ch01:74612628..74613407+ go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase family protein (AHRD V1 **** D7LHM5_ARALY); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00038775g0011.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.75|0|0.25|4|0|220 NbS00038775g0012.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.66|0|0|3|0|69 NbS00025195g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|164; (*TAIR) AT2G37730.1 (e_value=8e-85) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=6e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00025195g0010.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0|5|0|786; (*SWP) sp|Q9ZQ97|U73C4_ARATH (e_value=2e-150) UDP-glycosyltransferase 73C4 OS=Arabidopsis thaliana GN=UGT73C4 PE=2 SV=1;; (*TAIR) AT2G36770.1 (e_value=1e-151) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15415227-15416717 REVERSE LENGTH=496;; (*ITAG) Solyc09g008510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1996000-1997493 transcript_region:SL2.40ch09:1996000..1997493- go_terms:GO:0080046,GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080046,GO:0080044 NbS00006162g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|1|1|1|4|0|195; (*SWP) sp|Q6E2Z6|REHY_MEDTR (e_value=5e-105) 1-Cys peroxiredoxin OS=Medicago truncatula PE=2 SV=1;; (*TAIR) AT1G48130.1 (e_value=5e-93) | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780610-17781500 FORWARD LENGTH=216;; (*ITAG) Solyc03g096040.2.1 (e_value=5e-124) genomic_reference:SL2.40ch03 gene_region:51304230-51305908 transcript_region:SL2.40ch03:51304230..51305908+ go_terms:GO:0008379,GO:0004602 functional_description:"Mitochondrial peroxiredoxin (1-Cys Prx) with thioredoxin peroxidase activity (AHRD V1 **** C4QX37_PICPG); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379,GO:0004602 NbS00029517g0007.1 protein AED:0.15 eAED:0.16 QI:149|0.5|0.33|1|0|0.33|3|0|451; (*SWP) sp|Q70II3|EF110_ARATH (e_value=2e-14) Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2;; (*TAIR) AT5G50080.1 (e_value=1e-15) | Symbols: ERF110 | ethylene response factor 110 | chr5:20365948-20366835 FORWARD LENGTH=220;; (*ITAG) Solyc04g071770.2.1 (e_value=3e-71) genomic_reference:SL2.40ch04 gene_region:56338949-56340665 transcript_region:SL2.40ch04:56338949..56340665+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014802g0017.1 protein AED:0.08 eAED:0.09 QI:0|0.76|0.64|0.96|0.8|0.67|31|0|2610; (*SWP) sp|Q5XG71|UTP20_MOUSE (e_value=1e-107) Small subunit processome component 20 homolog OS=Mus musculus GN=Utp20 PE=2 SV=2;; (*TAIR) AT4G30990.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:15084456-15097860 FORWARD LENGTH=2599;; (*ITAG) Solyc09g092240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66714632-66734123 transcript_region:SL2.40ch09:66714632..66734123- go_terms:GO:0005488 functional_description:"Small subunit processome component 20 homolog (AHRD V1 **-- UTP20_MOUSE); contains Interpro domain(s) IPR011430 Down-regulated in metastasis "; GO:0005488 NbS00014802g0016.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|1|1|3|0|481; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-102) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=3e-102) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00014802g0015.1 protein AED:0.23 eAED:0.23 QI:101|0.8|0.83|1|1|1|6|464|156; (*SWP) sp|P17093|RS11_SOYBN (e_value=2e-92) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=2e-89) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=6e-98) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00031345g0010.1 protein AED:0.09 eAED:0.10 QI:0|0.66|0.75|1|0.66|0.75|4|0|347; (*SWP) sp|O23044|PER3_ARATH (e_value=1e-134) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=1e-135) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=2e-180) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00031345g0011.1 protein AED:0.09 eAED:0.09 QI:228|1|1|1|1|1|5|563|248; (*TAIR) AT1G05060.1 (e_value=1e-105) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1451255-1452858 REVERSE LENGTH=253;; (*ITAG) Solyc07g049200.2.1 (e_value=2e-140) genomic_reference:SL2.40ch07 gene_region:56817784-56820429 transcript_region:SL2.40ch07:56817784..56820429+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031345g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|306; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=6e-11) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=5e-12) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc07g049250.1.1 (e_value=4e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56846363-56847250 transcript_region:SL2.40ch07:56846363..56847250- go_terms:GO:0005634 functional_description:"Histone deacetylase complex SIN3 component (AHRD V1 *-*- A9TE35_PHYPA); contains Interpro domain(s) IPR003822 Paired amphipathic helix "; GO:0005634 NbS00015749g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|84 NbS00037800g0004.1 protein AED:0.28 eAED:0.30 QI:0|0.92|0.78|1|0.92|0.85|14|0|794; (*SWP) sp|Q9SD67|FTSH7_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1;; (*TAIR) AT3G47060.1 (e_value=0.0) | Symbols: ftsh7 | FTSH protease 7 | chr3:17332999-17336613 FORWARD LENGTH=802;; (*ITAG) Solyc06g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:929120-938493 transcript_region:SL2.40ch06:929120..938493- go_terms:GO:0004176 functional_description:"Cell division protease FtsH homolog (AHRD V1 *-*- C6RIJ8_9PROT); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00040828g0006.1 protein AED:0.33 eAED:0.66 QI:49|1|0.5|1|0|1|2|62|44 NbS00040828g0007.1 protein AED:0.15 eAED:0.15 QI:331|1|1|1|0.56|0.52|17|1957|1335; (*SWP) sp|C6L7U1|LIN1_LOTJA (e_value=2e-75) Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2;; (*TAIR) AT3G06880.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:2170516-2175686 REVERSE LENGTH=1264;; (*ITAG) Solyc01g066740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67286174-67294487 transcript_region:SL2.40ch01:67286174..67294487- go_terms:GO:0000166 functional_description:"Transducin family protein (Fragment) (AHRD V1 *--- D7L607_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbC24681446g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|187; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=4e-89) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=3e-90) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc07g064310.1.1 (e_value=1e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63738696-63739817 transcript_region:SL2.40ch07:63738696..63739817- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00036039g0013.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0.66|0.75|4|0|187; (*ITAG) Solyc10g047840.1.1 (e_value=7e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00036039g0007.1 protein AED:0.29 eAED:0.29 QI:206|1|1|1|1|1|6|45|285; (*SWP) sp|O04202|EIF3F_ARATH (e_value=6e-135) Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1;; (*TAIR) AT2G39990.1 (e_value=4e-136) | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698332-16699929 REVERSE LENGTH=293;; (*ITAG) Solyc11g013440.1.1 (e_value=2e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6453735-6462143 transcript_region:SL2.40ch11:6453735..6462143+ functional_description:"Eukaryotic translation initiation factor 3 subunit 5 (AHRD V1 ***- B4FRD9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00036039g0008.1 protein AED:0.37 eAED:0.39 QI:0|1|0.77|1|0.62|0.77|9|0|227; (*SWP) sp|P93045|BSH_ARATH (e_value=2e-125) Chromatin structure-remodeling complex protein BSH OS=Arabidopsis thaliana GN=BSH PE=1 SV=2;; (*TAIR) AT3G17590.2 (e_value=1e-127) | Symbols: BSH | transcription regulatory protein SNF5, putative (BSH) | chr3:6017313-6019591 REVERSE LENGTH=242;; (*ITAG) Solyc11g013400.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6409216-6419516 transcript_region:SL2.40ch11:6409216..6419516+ go_terms:GO:0000228 functional_description:"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (AHRD V1 ***- B6T3Y4_MAIZE); contains Interpro domain(s) IPR006939 SNF5/SMARCB1/INI1 "; GO:0000228 NbS00036039g0010.1 protein AED:0.26 eAED:0.36 QI:0|0|0|1|0|0|3|0|210; (*ITAG) Solyc10g044500.1.1 (e_value=4e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00036039g0014.1 protein AED:0.34 eAED:0.43 QI:69|0|0|1|0|0|3|0|108; (*ITAG) Solyc04g011660.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:4125296-4126710 transcript_region:SL2.40ch04:4125296..4126710+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001255g0005.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|1|1|3|0|540; (*SWP) sp|Q9H270|VPS11_HUMAN (e_value=2e-53) Vacuolar protein sorting-associated protein 11 homolog OS=Homo sapiens GN=VPS11 PE=1 SV=1;; (*TAIR) AT2G05170.1 (e_value=0.0) | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11 | chr2:1870020-1873278 FORWARD LENGTH=932;; (*ITAG) Solyc06g065170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37022881-37028663 transcript_region:SL2.40ch06:37022881..37028663+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting protein (AHRD V1 ***- C5JFZ3_AJEDS); contains Interpro domain(s) IPR016528 Vacuolar protein sorting-associated protein 11 "; GO:0005515 NbS00001255g0006.1 protein AED:0.12 eAED:0.16 QI:0|0|0|0.75|0|0|4|0|208; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=1e-62) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072830.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53108033-53108953 transcript_region:SL2.40ch11:53108033..53108953+ go_terms:GO:0005975 functional_description:"Chitinase 2 (AHRD V1 ***- B6U7J7_MAIZE); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00031870g0007.1 protein AED:0.00 eAED:0.00 QI:103|1|1|1|1|1|2|238|164 NbS00031870g0006.1 protein AED:0.27 eAED:0.27 QI:323|0.33|0.75|0.75|1|1|4|456|254; (*TAIR) AT5G17210.1 (e_value=3e-59) | Symbols: | Protein of unknown function (DUF1218) | chr5:5656519-5657970 FORWARD LENGTH=209;; (*ITAG) Solyc03g096860.2.1 (e_value=5e-104) genomic_reference:SL2.40ch03 gene_region:52681721-52685333 transcript_region:SL2.40ch03:52681721..52685333+ functional_description:"Fiber protein Fb34 (AHRD V1 ***- Q6T7D3_GOSBA); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00002961g0001.1 protein AED:0.23 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|247; (*SWP) sp|Q3UFY0|RRP36_MOUSE (e_value=6e-34) Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=2 SV=1;; (*TAIR) AT1G12650.4 (e_value=3e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=1e-123) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00017233g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|146; (*SWP) sp|P93354|H2B_TOBAC (e_value=4e-62) Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3;; (*TAIR) AT5G59910.1 (e_value=6e-63) | Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150;; (*ITAG) Solyc11g007920.1.1 (e_value=1e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2160950-2161384 transcript_region:SL2.40ch11:2160950..2161384- go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- A5BCC0_VITVI); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00017233g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.71|0.5|0.87|1|1|8|0|538; (*SWP) sp|Q9FYC2|PAO_ARATH (e_value=0.0) Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1;; (*TAIR) AT3G44880.1 (e_value=0.0) | Symbols: ACD1, LLS1, PAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr3:16383858-16386204 FORWARD LENGTH=537;; (*ITAG) Solyc11g066440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49284557-49288143 transcript_region:SL2.40ch11:49284557..49288143- go_terms:GO:0055114 functional_description:"Pheophorbide a oxygenase (Fragment) (AHRD V1 *--- D1MWF5_BRAOL); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0055114 NbS00017233g0001.1 protein AED:0.48 eAED:0.48 QI:0|1|0.5|1|1|1|2|0|72; (*TAIR) AT5G22875.2 (e_value=2e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:7651307-7651603 FORWARD LENGTH=69;; (*ITAG) Solyc11g066450.1.1 (e_value=6e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49289579-49289890 transcript_region:SL2.40ch11:49289579..49289890- functional_description:"Unknown Protein (AHRD V1)"; NbS00006564g0021.1 protein AED:0.23 eAED:0.23 QI:47|1|0.75|1|0|0|4|0|394; (*TAIR) AT5G23200.1 (e_value=2e-170) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7807319-7808988 FORWARD LENGTH=399;; (*ITAG) Solyc04g078160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60563520-60566989 transcript_region:SL2.40ch04:60563520..60566989+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD15 (AHRD V1 ***- Q9FMY0_ARATH)"; NbS00006564g0008.1 protein AED:0.39 eAED:0.39 QI:0|0.6|0.33|0.83|1|1|6|0|368; (*TAIR) AT1G27700.1 (e_value=1e-51) | Symbols: | Syntaxin/t-SNARE family protein | chr1:9640394-9641752 REVERSE LENGTH=297;; (*ITAG) Solyc04g078130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60551977-60559078 transcript_region:SL2.40ch04:60551977..60559078+ go_terms:GO:0016020 functional_description:"Clathrin-coat assembly protein-like (AHRD V1 **-- Q6Z9Z3_ORYSJ); contains Interpro domain(s) IPR015260 Syntaxin 6, N-terminal "; GO:0016020 NbS00006564g0024.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.6|0.5|0.4|5|0|616; (*SWP) sp|Q99614|TTC1_HUMAN (e_value=2e-13) Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1;; (*TAIR) AT5G43120.1 (e_value=1e-170) | Symbols: | ARM-repeat/Tetratricopeptide repeat (TPR)-like protein | chr5:17312602-17314368 FORWARD LENGTH=588;; (*ITAG) Solyc04g078170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60569012-60571652 transcript_region:SL2.40ch04:60569012..60571652- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MQ06_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006564g0006.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|126; (*SWP) sp|Q42342|CYB51_ARATH (e_value=8e-20) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT5G53560.1 (e_value=6e-21) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc04g078140.2.1 (e_value=5e-52) genomic_reference:SL2.40ch04 gene_region:60559327-60560571 transcript_region:SL2.40ch04:60559327..60560571- go_terms:GO:0045153 functional_description:"Cytochrome B5 (AHRD V1 **** Q9ZSP7_PETHY); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153 NbS00006564g0007.1 protein AED:0.44 eAED:0.44 QI:0|1|0.5|1|1|1|2|198|76; (*ITAG) Solyc04g078150.2.1 (e_value=6e-16) genomic_reference:SL2.40ch04 gene_region:60560319-60564674 transcript_region:SL2.40ch04:60560319..60564674- functional_description:"Unknown Protein (AHRD V1)"; NbS00045638g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|235; (*SWP) sp|Q9C4Z7|MINE1_ARATH (e_value=3e-81) Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1 PE=1 SV=1;; (*TAIR) AT1G69390.1 (e_value=2e-82) | Symbols: ATMINE1, MINE1, ARC12 | homologue of bacterial MinE 1 | chr1:26084721-26086284 FORWARD LENGTH=229;; (*ITAG) Solyc05g012710.2.1 (e_value=4e-138) genomic_reference:SL2.40ch05 gene_region:5895799-5899691 transcript_region:SL2.40ch05:5895799..5899691+ go_terms:GO:0042802 functional_description:"Plastid division regulator MinE (AHRD V1 ***- Q45RR9_SOYBN); contains Interpro domain(s) IPR005527 Septum formation topological specificity factor MinE "; GO:0042802 NbS00010515g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|168 NbS00010515g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|108; (*ITAG) Solyc01g102430.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:83005452-83005896 transcript_region:SL2.40ch01:83005452..83005896- functional_description:"Unknown Protein (AHRD V1)"; NbS00010515g0013.1 protein AED:0.60 eAED:0.60 QI:0|0.16|0|0.42|0.83|1|7|0|395; (*ITAG) Solyc04g051520.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49918628-49922700 transcript_region:SL2.40ch04:49918628..49922700+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010515g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc01g102420.1.1 (e_value=4e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83003378-83003704 transcript_region:SL2.40ch01:83003378..83003704+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031302g0013.1 protein AED:0.30 eAED:0.30 QI:140|1|1|1|0.4|0.66|6|421|150; (*SWP) sp|Q9CAX6|RS142_ARATH (e_value=3e-80) 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1;; (*TAIR) AT3G11510.1 (e_value=2e-81) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=7e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00031302g0012.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.25|1|1|4|0|132; (*ITAG) Solyc11g013030.1.1 (e_value=6e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00032327g0004.1 protein AED:0.00 eAED:0.00 QI:183|1|0.66|1|0.5|0.33|3|0|58; (*TAIR) AT3G02860.1 (e_value=2e-23) | Symbols: | zinc ion binding | chr3:625299-627157 REVERSE LENGTH=312; NbS00032327g0005.1 protein AED:0.37 eAED:0.45 QI:46|0.8|0.33|0.83|0.6|0.66|6|0|273; (*TAIR) AT3G02860.2 (e_value=2e-35) | Symbols: | zinc ion binding | chr3:625299-627157 REVERSE LENGTH=313;; (*ITAG) Solyc11g011490.1.1 (e_value=6e-96) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:4539053-4542055 transcript_region:SL2.40ch11:4539053..4542055+ functional_description:"CTV.12 (AHRD V1 ***- Q8H6R5_PONTR)"; NbS00013749g0006.1 protein AED:0.08 eAED:0.08 QI:86|0.85|0.87|1|0.71|0.87|8|246|403; (*SWP) sp|Q9UPY8|MARE3_HUMAN (e_value=6e-59) Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1;; (*TAIR) AT5G67270.1 (e_value=4e-120) | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding protein 1C | chr5:26840248-26841984 REVERSE LENGTH=329;; (*ITAG) Solyc02g092950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48494061-48497301 transcript_region:SL2.40ch02:48494061..48497301+ go_terms:GO:0051010 functional_description:"Microtubule plus-end binding protein (AHRD V1 **** B2LU37_BRANA); contains Interpro domain(s) IPR001715 Calponin-like actin-binding "; GO:0051010 NbS00013749g0010.1 protein AED:0.14 eAED:0.15 QI:0|0.5|0|1|1|1|3|0|861; (*SWP) sp|C0LGS3|Y4372_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1;; (*TAIR) AT4G37250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:17527789-17530191 REVERSE LENGTH=768;; (*ITAG) Solyc02g092940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48488587-48492016 transcript_region:SL2.40ch02:48488587..48492016+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00006282g0009.1 protein AED:0.24 eAED:0.26 QI:302|0.8|0.85|1|0.65|0.76|21|204|762; (*TAIR) AT2G28320.1 (e_value=0.0) | Symbols: | Pleckstrin homology (PH) and lipid-binding START domains-containing protein | chr2:12095161-12099424 FORWARD LENGTH=737;; (*ITAG) Solyc11g069530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51224817-51234971 transcript_region:SL2.40ch11:51224817..51234971- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00035771g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|77 NbS00025709g0010.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.22|1|0.62|0.44|9|0|406; (*SWP) sp|O94260|G3BP_SCHPO (e_value=2e-12) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.2 (e_value=2e-63) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc06g007780.2.1 (e_value=5e-149) genomic_reference:SL2.40ch06 gene_region:1728885-1733953 transcript_region:SL2.40ch06:1728885..1733953+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00025709g0011.1 protein AED:0.22 eAED:0.32 QI:0|0.81|0.75|1|0.63|0.75|12|395|504; (*TAIR) AT1G34320.1 (e_value=1e-180) | Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657;; (*ITAG) Solyc06g065460.2.1 (e_value=3e-180) genomic_reference:SL2.40ch06 gene_region:37243663-37253947 transcript_region:SL2.40ch06:37243663..37253947- functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00025709g0003.1 protein AED:0.27 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|213; (*ITAG) Solyc06g007790.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1734549-1735550 transcript_region:SL2.40ch06:1734549..1735550- functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 *-*- Q9LSG4_ARATH)"; NbS00012621g0108.1 protein AED:0.00 eAED:0.00 QI:146|1|1|1|0|0|4|126|74 NbS00012621g0109.1 protein AED:0.03 eAED:0.03 QI:124|1|0.5|1|0|0|2|0|423 NbS00012621g0112.1 protein AED:0.39 eAED:0.39 QI:0|0.54|0.58|0.91|0.54|0.66|12|726|314 NbS00012621g0101.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|423 NbS00025312g0010.1 protein AED:0.09 eAED:0.09 QI:121|1|1|1|0.37|0.44|9|11|524; (*SWP) sp|Q9M115|ZDH16_ARATH (e_value=2e-125) Probable S-acyltransferase At4g01730 OS=Arabidopsis thaliana GN=At4g01730 PE=2 SV=2;; (*TAIR) AT4G01730.1 (e_value=2e-126) | Symbols: | DHHC-type zinc finger family protein | chr4:749574-752034 FORWARD LENGTH=508;; (*ITAG) Solyc01g079100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70675984-70679430 transcript_region:SL2.40ch01:70675984..70679430+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00025312g0013.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.77|1|0.37|0.33|9|405|454; (*SWP) sp|O24163|PPOC_TOBAC (e_value=0.0) Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1;; (*TAIR) AT4G01690.1 (e_value=0.0) | Symbols: PPOX, HEMG1, PPO1 | Flavin containing amine oxidoreductase family | chr4:729929-732309 FORWARD LENGTH=537;; (*ITAG) Solyc01g079090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70668181-70673636 transcript_region:SL2.40ch01:70668181..70673636+ go_terms:GO:0055114 functional_description:"Protoporphyrinogen oxidase (AHRD V1 ***- O64384_SOLTU); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00013744g0003.1 protein AED:0.04 eAED:0.04 QI:613|1|1|1|0.33|0.25|4|275|440; (*SWP) sp|Q8RX01|Y3567_ARATH (e_value=2e-180) BTB/POZ domain-containing protein At3g05675 OS=Arabidopsis thaliana GN=At3g05675 PE=2 SV=1;; (*TAIR) AT3G05675.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr3:1658425-1659859 REVERSE LENGTH=441;; (*ITAG) Solyc01g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1598738-1601058 transcript_region:SL2.40ch01:1598738..1601058+ functional_description:"At5g63850 (Fragment) (AHRD V1 *-*- Q3YIL4_ARATH)"; NbS00007429g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|358; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=8e-57) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT3G28920.1 (e_value=2e-63) | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34 | chr3:10940598-10941536 REVERSE LENGTH=312;; (*ITAG) Solyc02g067320.1.1 (e_value=6e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32098473-32099468 transcript_region:SL2.40ch02:32098473..32099468- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00037006g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.75|1|0.57|0.5|8|0|388; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=6e-67) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G01480.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:216980-220341 FORWARD LENGTH=567;; (*ITAG) Solyc05g007960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2377588-2388715 transcript_region:SL2.40ch05:2377588..2388715- functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 ***- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00037006g0009.1 protein AED:0.43 eAED:0.43 QI:0|0.25|0|0.4|1|1|5|0|144; (*SWP) sp|Q0IIB1|PHYD1_BOVIN (e_value=2e-28) Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus GN=PHYHD1 PE=2 SV=1;; (*TAIR) AT2G01490.1 (e_value=1e-54) | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221316-223187 FORWARD LENGTH=283;; (*ITAG) Solyc05g007970.2.1 (e_value=8e-80) genomic_reference:SL2.40ch05 gene_region:2390017-2393710 transcript_region:SL2.40ch05:2390017..2393710+ go_terms:GO:0005515 functional_description:"Phytanoyl-CoA dioxygenase (AHRD V1 ***- B6R8S2_9RHOB); contains Interpro domain(s) IPR008775 Phytanoyl-CoA dioxygenase "; GO:0005515 NbS00044427g0002.1 protein AED:0.43 eAED:0.43 QI:78|-1|0|1|-1|1|1|0|69; (*SWP) sp|Q01544|HSP21_IPONI (e_value=8e-19) 17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=2e-12) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062340.2.1 (e_value=8e-25) genomic_reference:SL2.40ch08 gene_region:48122173-48122945 transcript_region:SL2.40ch08:48122173..48122945- go_terms:GO:0051082 functional_description:"Class II small heat shock protein Le-HSP17.6 (AHRD V1 ***- Q96489_SOLLC); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00044427g0005.1 protein AED:0.23 eAED:0.24 QI:15|0.85|0.75|1|0.57|0.62|8|0|281; (*SWP) sp|Q8K4F6|NSUN5_MOUSE (e_value=1e-62) Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2;; (*TAIR) AT5G26180.2 (e_value=9e-121) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:9149253-9152595 FORWARD LENGTH=567;; (*ITAG) Solyc08g062560.2.1 (e_value=1e-176) genomic_reference:SL2.40ch08 gene_region:48597719-48608086 transcript_region:SL2.40ch08:48597719..48608086- go_terms:GO:0005515,GO:0016434 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-** B5YF43_DICT6); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0005515,GO:0016434 NbS00046549g0002.1 protein AED:0.32 eAED:0.33 QI:154|0|0.5|1|0|1|2|0|404; (*TAIR) AT5G07900.1 (e_value=4e-49) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00046549g0009.1 protein AED:0.52 eAED:0.54 QI:0|0|0|0.5|0.33|0.5|4|0|147; (*ITAG) Solyc02g082010.1.1 (e_value=4e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00046549g0010.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|3|0|260; (*TAIR) AT5G07900.1 (e_value=2e-32) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00048473g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.5|1|1|1|4|0|194; (*TAIR) AT2G36550.1 (e_value=3e-18) | Symbols: | CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT2G36540.1); Has 91 Blast hits to 91 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:15327773-15328802 FORWARD LENGTH=141;; (*ITAG) Solyc09g008960.1.1 (e_value=1e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2341500-2342998 transcript_region:SL2.40ch09:2341500..2342998- functional_description:"Homology to unknown gene (AHRD V1 ***- Q01A04_OSTTA); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00006305g0008.1 protein AED:0.09 eAED:0.09 QI:152|0.66|0.5|0.75|0.66|0.75|4|0|71; (*TAIR) AT4G17420.2 (e_value=5e-26) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr4:9722378-9724443 REVERSE LENGTH=267;; (*ITAG) Solyc08g007320.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00006305g0011.1 protein AED:0.33 eAED:0.33 QI:5|0.8|0.83|1|0.4|0.5|6|0|201; (*TAIR) AT4G17420.1 (e_value=2e-96) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr4:9722544-9724443 REVERSE LENGTH=285;; (*ITAG) Solyc08g007320.2.1 (e_value=1e-124) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00006305g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.78|0.79|0.87|0.86|0.83|24|0|749; (*SWP) sp|O15457|MSH4_HUMAN (e_value=2e-106) MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=2 SV=2;; (*TAIR) AT4G17380.1 (e_value=0.0) | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4:9708742-9714068 FORWARD LENGTH=792;; (*ITAG) Solyc08g007330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1892968-1906524 transcript_region:SL2.40ch08:1892968..1906524- go_terms:GO:0005515 functional_description:"DNA mismatch repair protein mutS (AHRD V1 ***- B2W010_PYRTR); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0005515 NbS00043485g0009.1 protein AED:0.21 eAED:0.21 QI:187|1|1|1|0.8|0.66|6|515|301; (*SWP) sp|Q9LXV5|NFYA1_ARATH (e_value=1e-54) Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1;; (*TAIR) AT5G12840.4 (e_value=3e-56) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=271;; (*ITAG) Solyc11g065700.1.1 (e_value=7e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48316685-48322085 transcript_region:SL2.40ch11:48316685..48322085- go_terms:GO:0005634 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-*- B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634 NbS00043485g0010.1 protein AED:0.25 eAED:0.25 QI:130|0.5|0.4|1|0.25|0.2|5|200|260; (*TAIR) AT3G20920.1 (e_value=4e-89) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=365;; (*ITAG) Solyc11g065690.1.1 (e_value=2e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48305577-48311971 transcript_region:SL2.40ch11:48305577..48311971+ go_terms:GO:0016021 functional_description:"Protein transporter (AHRD V1 **-- B6UFL6_MAIZE); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00043485g0011.1 protein AED:0.64 eAED:0.93 QI:0|0|0|0.66|0|0.66|3|0|92 NbS00003506g0011.1 protein AED:0.18 eAED:0.19 QI:296|0.78|0.8|1|0.89|0.9|20|0|676; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=4e-80) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT4G24100.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:12515223-12519336 FORWARD LENGTH=709;; (*ITAG) Solyc08g083040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62790918-62801166 transcript_region:SL2.40ch08:62790918..62801166- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003506g0010.1 protein AED:0.22 eAED:0.22 QI:196|0.66|0.85|0.85|0.83|0.85|7|576|312; (*TAIR) AT5G41960.1 (e_value=1e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16789760-16790868 FORWARD LENGTH=217;; (*ITAG) Solyc08g083030.2.1 (e_value=3e-52) genomic_reference:SL2.40ch08 gene_region:62787635-62790415 transcript_region:SL2.40ch08:62787635..62790415- functional_description:"Unknown Protein (AHRD V1)"; NbS00003506g0008.1 protein AED:0.42 eAED:0.49 QI:142|0.33|0.25|0.75|0.66|0.5|4|0|60 NbS00003506g0002.1 protein AED:0.25 eAED:0.47 QI:487|1|0.5|1|0|0|2|0|76 NbS00022077g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.66|1|0.5|0.66|3|93|495; (*SWP) sp|O65782|C83B1_ARATH (e_value=8e-166) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1;; (*TAIR) AT4G31500.1 (e_value=6e-167) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc09g092640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66987311-66989373 transcript_region:SL2.40ch09:66987311..66989373+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00022077g0006.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|65; (*SWP) sp|Q9LIP6|C71BV_ARATH (e_value=1e-13) Cytochrome P450 71B34 OS=Arabidopsis thaliana GN=CYP71B34 PE=2 SV=1;; (*TAIR) AT3G26300.1 (e_value=8e-15) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc09g092600.2.1 (e_value=5e-28) genomic_reference:SL2.40ch09 gene_region:66968741-66970627 transcript_region:SL2.40ch09:66968741..66970627+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044016g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|79; (*TAIR) AT1G75250.2 (e_value=9e-30) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28244463-28245453 REVERSE LENGTH=97;; (*ITAG) Solyc01g109690.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88340098-88340346 transcript_region:SL2.40ch01:88340098..88340346- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00044952g0007.1 protein AED:0.18 eAED:0.21 QI:0|0.73|0.62|0.93|0.8|0.81|16|0|587; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=1e-23) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09890.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617;; (*ITAG) Solyc12g088050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61982740-61987045 transcript_region:SL2.40ch12:61982740..61987045- go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00044952g0006.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.6|0.8|0.5|0.6|5|300|194; (*SWP) sp|Q6GPH4|XAF1_HUMAN (e_value=8e-20) XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1;; (*TAIR) AT1G09920.1 (e_value=2e-81) | Symbols: | TRAF-type zinc finger-related | chr1:3224863-3226860 REVERSE LENGTH=192;; (*ITAG) Solyc12g088070.1.1 (e_value=4e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61996750-62000973 transcript_region:SL2.40ch12:61996750..62000973- functional_description:"TRAF type zinc finger domain containing 1 (AHRD V1 **-- B6T8M5_MAIZE)"; NbS00011856g0003.1 protein AED:0.06 eAED:0.12 QI:0|0|0|1|1|1|2|0|492; (*TAIR) AT3G57620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr3:21337564-21339207 FORWARD LENGTH=547;; (*ITAG) Solyc07g006660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1525141-1526802 transcript_region:SL2.40ch07:1525141..1526802- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00011856g0013.1 protein AED:0.23 eAED:0.23 QI:181|0.88|0.9|1|0.66|0.8|10|353|432; (*TAIR) AT4G25770.1 (e_value=2e-146) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:13117821-13119982 REVERSE LENGTH=418;; (*ITAG) Solyc07g006690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1547767-1557882 transcript_region:SL2.40ch07:1547767..1557882- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbS00011856g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.6|1|0.75|0.6|5|0|157; (*SWP) sp|Q94CG0|CIPKL_ARATH (e_value=4e-32) CBL-interacting serine/threonine-protein kinase 21 OS=Arabidopsis thaliana GN=CIPK21 PE=1 SV=1;; (*TAIR) AT5G57630.1 (e_value=3e-33) | Symbols: CIPK21, SnRK3.4 | CBL-interacting protein kinase 21 | chr5:23341092-23343143 REVERSE LENGTH=416; NbS00011856g0011.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|0|0|2|0|108; (*ITAG) Solyc07g006680.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1533666-1535024 transcript_region:SL2.40ch07:1533666..1535024+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00011856g0010.1 protein AED:0.32 eAED:0.50 QI:67|0|0|0.75|0.33|0.5|4|0|99; (*SWP) sp|Q94CG0|CIPKL_ARATH (e_value=3e-44) CBL-interacting serine/threonine-protein kinase 21 OS=Arabidopsis thaliana GN=CIPK21 PE=1 SV=1;; (*TAIR) AT5G57630.1 (e_value=3e-45) | Symbols: CIPK21, SnRK3.4 | CBL-interacting protein kinase 21 | chr5:23341092-23343143 REVERSE LENGTH=416;; (*ITAG) Solyc12g009570.1.1 (e_value=2e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2827273-2833740 transcript_region:SL2.40ch12:2827273..2833740- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 09 (AHRD V1 ***- A5BZV3_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbC26228280g0003.1 protein AED:0.19 eAED:0.19 QI:358|1|0.66|1|0.8|0.83|6|779|71 NbS00023880g0008.1 protein AED:0.12 eAED:0.12 QI:172|0.66|0.75|1|1|0.75|4|0|149; (*TAIR) AT5G24710.1 (e_value=3e-67) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=2e-72) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00023880g0007.1 protein AED:0.16 eAED:0.16 QI:172|0.66|0.75|1|1|1|4|0|169; (*TAIR) AT5G24710.1 (e_value=9e-85) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=9e-90) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00017613g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.8|0.83|6|0|408; (*TAIR) AT5G65960.1 (e_value=9e-130) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00040649g0004.1 protein AED:0.27 eAED:0.33 QI:0|0.37|0.33|1|0.12|0.22|9|1483|510; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=3e-94) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.2 (e_value=2e-95) | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615894 FORWARD LENGTH=588;; (*ITAG) Solyc06g066330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38004636-38009075 transcript_region:SL2.40ch06:38004636..38009075+ go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q336N3_ORYSJ); contains Interpro domain(s) IPR004170 WWE domain "; GO:0003950 NbS00002209g0001.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|1|1|2|0|112 NbS00008569g0011.1 protein AED:0.41 eAED:0.42 QI:0|0.75|0.69|1|0.41|0.53|13|0|408; (*SWP) sp|Q9SYG7|AL7B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 7 member B4 OS=Arabidopsis thaliana GN=ALDH7B4 PE=2 SV=3;; (*TAIR) AT1G54100.2 (e_value=0.0) | Symbols: ALDH7B4 | aldehyde dehydrogenase 7B4 | chr1:20195435-20198853 REVERSE LENGTH=508;; (*ITAG) Solyc03g122310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64227127-64232821 transcript_region:SL2.40ch03:64227127..64232821- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 7b (AHRD V1 **** D9IFB7_WHEAT); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00008569g0003.1 protein AED:0.00 eAED:0.00 QI:481|1|0.5|1|0|0.5|2|0|177; (*TAIR) AT1G72510.2 (e_value=3e-43) | Symbols: | Protein of unknown function (DUF1677) | chr1:27303906-27304403 FORWARD LENGTH=165;; (*ITAG) Solyc03g122300.1.1 (e_value=7e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64225365-64225850 transcript_region:SL2.40ch03:64225365..64225850+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00022245g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|3|0|289; (*SWP) sp|O81117|C94A1_VICSA (e_value=1e-70) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT3G48520.1 (e_value=1e-112) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc03g111300.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55969688-55971163 transcript_region:SL2.40ch03:55969688..55971163+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00029221g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|4|281|249; (*SWP) sp|Q9SJL6|MEM11_ARATH (e_value=4e-90) Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1;; (*TAIR) AT2G36900.1 (e_value=3e-91) | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:15491615-15492587 REVERSE LENGTH=225;; (*ITAG) Solyc07g047720.2.1 (e_value=1e-129) genomic_reference:SL2.40ch07 gene_region:56257147-56260699 transcript_region:SL2.40ch07:56257147..56260699+ go_terms:GO:0005215,GO:0005484 functional_description:"Golgi SNAP receptor complex member bos1 (AHRD V1 **-* B0D8E0_LACBS); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0005215,GO:0005484 NbS00029221g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|1315|456; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=1e-13) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=3e-16) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc07g047760.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:56280409-56281866 transcript_region:SL2.40ch07:56280409..56281866- functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00029221g0012.1 protein AED:0.38 eAED:0.44 QI:0|0|0|1|0|0|3|0|390; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=2e-67) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=1e-68) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=6e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00017871g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|116; (*TAIR) AT1G05970.1 (e_value=2e-24) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:1816253-1816991 REVERSE LENGTH=198;; (*ITAG) Solyc10g079580.1.1 (e_value=9e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60410739-60411670 transcript_region:SL2.40ch10:60410739..60411670- go_terms:GO:0003676 functional_description:"RNA-binding region RNP-1 (AHRD V1 ***- B6TT30_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00017871g0007.1 protein AED:0.25 eAED:0.25 QI:351|1|1|1|0.57|0.62|8|609|321; (*TAIR) AT3G10250.2 (e_value=2e-115) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc10g079710.1.1 (e_value=3e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60536606-60540135 transcript_region:SL2.40ch10:60536606..60540135+ functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 ***- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00032172g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|123|99; (*TAIR) AT1G11120.2 (e_value=5e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3715229-3717320 FORWARD LENGTH=161;; (*ITAG) Solyc03g006590.2.1 (e_value=3e-54) genomic_reference:SL2.40ch03 gene_region:1175427-1178105 transcript_region:SL2.40ch03:1175427..1178105+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038373g0002.1 protein AED:0.18 eAED:0.20 QI:0|1|0|1|0|0.5|2|0|94; (*SWP) sp|O80492|P2C05_ARATH (e_value=7e-35) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=5e-36) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=3e-53) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00024433g0001.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|4|0|126; (*TAIR) AT5G49540.1 (e_value=7e-33) | Symbols: | Rab5-interacting family protein | chr5:20104804-20105609 REVERSE LENGTH=114;; (*ITAG) Solyc01g058280.2.1 (e_value=8e-50) genomic_reference:SL2.40ch01 gene_region:58787500-58791252 transcript_region:SL2.40ch01:58787500..58791252- functional_description:"Transmembrane protein 93 (AHRD V1 ***- B0WGS0_CULQU); contains Interpro domain(s) IPR008504 Protein of unknown function DUF786 "; NbS00029890g0004.1 protein AED:0.15 eAED:0.15 QI:165|0.87|0.77|1|0.62|0.77|9|217|433; (*TAIR) AT3G52870.1 (e_value=7e-151) | Symbols: | IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456;; (*ITAG) Solyc10g085610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64054085-64057974 transcript_region:SL2.40ch10:64054085..64057974- functional_description:"Calmodulin binding protein (AHRD V1 **-- B6SL12_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00046528g0005.1 protein AED:0.38 eAED:0.39 QI:171|1|0.87|1|0.57|0.62|8|0|236; (*SWP) sp|O74545|YCV6_SCHPO (e_value=2e-39) Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=2 SV=1;; (*TAIR) AT3G13800.1 (e_value=2e-101) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr3:4538879-4541366 FORWARD LENGTH=361;; (*ITAG) Solyc03g121670.2.1 (e_value=2e-138) genomic_reference:SL2.40ch03 gene_region:63823121-63827134 transcript_region:SL2.40ch03:63823121..63827134- go_terms:GO:0003824 functional_description:"Beta-lactamase domain protein (AHRD V1 **-- D5SNK2_PLAL2); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00046528g0006.1 protein AED:0.37 eAED:0.40 QI:0|0.6|0.66|1|0|0.16|6|511|148; (*TAIR) AT3G13800.1 (e_value=1e-56) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr3:4538879-4541366 FORWARD LENGTH=361;; (*ITAG) Solyc03g121670.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:63823121-63827134 transcript_region:SL2.40ch03:63823121..63827134- go_terms:GO:0003824 functional_description:"Beta-lactamase domain protein (AHRD V1 **-- D5SNK2_PLAL2); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00007256g0008.1 protein AED:0.25 eAED:0.41 QI:0|0.66|0.42|0.85|1|1|7|0|233; (*SWP) sp|Q8H156|RAN3_ARATH (e_value=4e-123) GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2;; (*TAIR) AT5G55190.1 (e_value=3e-124) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221;; (*ITAG) Solyc01g104700.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:84871561-84875061 transcript_region:SL2.40ch01:84871561..84875061- go_terms:GO:0003924 functional_description:"GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR018210 GTP-binding nuclear protein, Ran, conserved site IPR002041 Ran GTPase "; GO:0003924 NbS00000447g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|3|0|1074; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g023950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15283647-15287851 transcript_region:SL2.40ch02:15283647..15287851- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00027232g0001.1 protein AED:0.20 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|81 NbS00027232g0012.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|1|1|2|0|71; (*ITAG) Solyc02g081480.2.1 (e_value=3e-30) genomic_reference:SL2.40ch02 gene_region:40008799-40010960 transcript_region:SL2.40ch02:40008799..40010960+ go_terms:GO:0006468 functional_description:"Receptor kinase (AHRD V1 ***- Q9SWF1_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027232g0015.1 protein AED:0.42 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|139; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=5e-27) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=5e-33) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc02g079610.2.1 (e_value=6e-61) genomic_reference:SL2.40ch02 gene_region:38702972-38704500 transcript_region:SL2.40ch02:38702972..38704500+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00006034g0001.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0.75|1|0|0.5|4|870|126; (*TAIR) AT2G18840.1 (e_value=9e-27) | Symbols: | Integral membrane Yip1 family protein | chr2:8158288-8159848 FORWARD LENGTH=281;; (*ITAG) Solyc07g018210.2.1 (e_value=1e-38) genomic_reference:SL2.40ch07 gene_region:9727683-9732768 transcript_region:SL2.40ch07:9727683..9732768- go_terms:GO:0017137 functional_description:"Yip1 domain containing protein expressed (AHRD V1 **-- D8L9M4_WHEAT); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00006034g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|222; (*TAIR) AT5G57500.1 (e_value=4e-143) | Symbols: | Galactosyltransferase family protein | chr5:23286406-23287525 REVERSE LENGTH=318;; (*ITAG) Solyc07g018200.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:9698942-9699901 transcript_region:SL2.40ch07:9698942..9699901+ go_terms:GO:0016020 functional_description:"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 (AHRD V1 *--- B3GN5_RAT); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00025446g0007.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|0.5|0.33|3|0|662; (*SWP) sp|O65012|C78A4_PINRA (e_value=0.0) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT5G09970.1 (e_value=0.0) | Symbols: CYP78A7 | cytochrome P450, family 78, subfamily A, polypeptide 7 | chr5:3112241-3113987 FORWARD LENGTH=536;; (*ITAG) Solyc12g056810.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48247405-48249140 transcript_region:SL2.40ch12:48247405..48249140+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000268g0021.1 protein AED:0.22 eAED:0.26 QI:64|0|0|0.5|0|0.25|4|0|217; (*SWP) sp|P93313|NU4M_ARATH (e_value=1e-13) NADH-ubiquinone oxidoreductase chain 4 OS=Arabidopsis thaliana GN=ND4 PE=2 SV=2;; (*ITAG) ATMG00580.1 (e_value=6e-14) | Symbols: NAD4 | NADH dehydrogenase subunit 4 | chrM:161693-169674 FORWARD LENGTH=495; NbS00000268g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|78; (*ITAG) Solyc08g036550.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:25589864-25590124 transcript_region:SL2.40ch08:25589864..25590124- functional_description:"Unknown Protein (AHRD V1)"; NbS00000268g0004.1 protein AED:0.50 eAED:0.50 QI:0|0|0|1|1|1|2|0|80 NbS00000268g0019.1 protein AED:0.20 eAED:0.51 QI:0|0|0|1|0|0|5|0|237; (*SWP) sp|P51409|RM05_SOLTU (e_value=1e-44) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=5e-39) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=6e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00000268g0020.1 protein AED:0.37 eAED:0.52 QI:0|0|0|1|0|0|2|0|108; (*SWP) sp|P49387|RT14_BRANA (e_value=3e-42) Ribosomal protein S14, mitochondrial OS=Brassica napus GN=RPS14 PE=3 SV=1;; (*TAIR) AT2G34520.1 (e_value=5e-35) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=6e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00000268g0022.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|103; (*ITAG) Solyc11g056430.1.1 (e_value=4e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43139373-43139774 transcript_region:SL2.40ch11:43139373..43139774+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000268g0024.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|89 NbS00000268g0023.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|0|0|2|0|86 NbS00000268g0025.1 protein AED:0.40 eAED:0.83 QI:0|0|0|1|0|0|2|0|78 NbS00006555g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|300; (*SWP) sp|Q9FMZ0|BKI1_ARATH (e_value=9e-25) BRI1 kinase inhibitor 1 OS=Arabidopsis thaliana GN=BKI1 PE=1 SV=1;; (*TAIR) AT5G42750.1 (e_value=7e-26) | Symbols: BKI1 | BRI1 kinase inhibitor 1 | chr5:17143028-17144041 REVERSE LENGTH=337;; (*ITAG) Solyc04g079110.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:61292473-61293435 transcript_region:SL2.40ch04:61292473..61293435- functional_description:"Unknown Protein (AHRD V1)"; NbS00014966g0001.1 protein AED:0.39 eAED:0.39 QI:107|1|1|1|1|1|2|241|136; (*TAIR) AT1G55160.1 (e_value=1e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20578476-20579803 FORWARD LENGTH=188;; (*ITAG) Solyc07g038190.2.1 (e_value=2e-37) genomic_reference:SL2.40ch07 gene_region:42863698-42865756 transcript_region:SL2.40ch07:42863698..42865756- functional_description:"Unknown Protein (AHRD V1)"; NbS00018394g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|167; (*SWP) sp|Q9C9I2|ERF21_ARATH (e_value=2e-40) Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1;; (*TAIR) AT1G71450.1 (e_value=2e-41) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26927088-26927639 FORWARD LENGTH=183;; (*ITAG) Solyc11g042580.1.1 (e_value=3e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:32576083-32576574 transcript_region:SL2.40ch11:32576083..32576574+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00039859g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|242; (*SWP) sp|Q6I9Y2|THOC7_HUMAN (e_value=1e-16) THO complex subunit 7 homolog OS=Homo sapiens GN=THOC7 PE=1 SV=3;; (*TAIR) AT5G16790.1 (e_value=2e-108) | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft1p | chr5:5522642-5523475 REVERSE LENGTH=233;; (*ITAG) Solyc01g008990.2.1 (e_value=2e-151) genomic_reference:SL2.40ch01 gene_region:3003153-3007525 transcript_region:SL2.40ch01:3003153..3007525+ go_terms:GO:0005515 functional_description:"THO complex subunit 7 homolog (AHRD V1 ***- B5XFL3_SALSA); contains Interpro domain(s) IPR018018 Tho complex subunit 7 "; GO:0005515 NbS00039859g0003.1 protein AED:0.26 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|156; (*TAIR) AT3G07220.1 (e_value=1e-15) | Symbols: | SMAD/FHA domain-containing protein | chr3:2297968-2299407 FORWARD LENGTH=320;; (*ITAG) Solyc09g059500.2.1 (e_value=8e-22) genomic_reference:SL2.40ch09 gene_region:50169017-50179394 transcript_region:SL2.40ch09:50169017..50179394+ go_terms:GO:0016563 functional_description:"Forkhead box K1 (AHRD V1 *--- C1K2Z9_ORYLA); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0016563 NbS00039859g0014.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|0|0|2|0|88; (*ITAG) Solyc01g008990.2.1 (e_value=3e-17) genomic_reference:SL2.40ch01 gene_region:3003153-3007525 transcript_region:SL2.40ch01:3003153..3007525+ go_terms:GO:0005515 functional_description:"THO complex subunit 7 homolog (AHRD V1 ***- B5XFL3_SALSA); contains Interpro domain(s) IPR018018 Tho complex subunit 7 "; GO:0005515 NbS00046644g0005.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|92; (*ITAG) Solyc05g045960.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:56966004-56966340 transcript_region:SL2.40ch05:56966004..56966340+ go_terms:GO:0003677 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00046644g0008.1 protein AED:0.13 eAED:0.13 QI:830|1|1|1|1|1|3|304|95; (*SWP) sp|P59234|YIPL_SOLTU (e_value=1e-36) Protein yippee-like OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G40110.1 (e_value=4e-36) | Symbols: | Yippee family putative zinc-binding protein | chr2:16748159-16749357 FORWARD LENGTH=130;; (*ITAG) Solyc10g076750.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59022368-59026794 transcript_region:SL2.40ch10:59022368..59026794+ functional_description:"Yippee-like protein (AHRD V1 ***- A9QXI3_SOLTU); contains Interpro domain(s) IPR004910 Yippee-like protein "; NbS00046644g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|99; (*ITAG) Solyc10g076720.1.1 (e_value=5e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:58999925-59000825 transcript_region:SL2.40ch10:58999925..59000825+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053794g0004.1 protein AED:0.04 eAED:0.11 QI:0|0.5|0.33|1|1|1|3|0|298; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=6e-84) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1;; (*TAIR) AT3G02550.1 (e_value=5e-85) | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263;; (*ITAG) Solyc02g085910.2.1 (e_value=2e-134) genomic_reference:SL2.40ch02 gene_region:43268986-43270169 transcript_region:SL2.40ch02:43268986..43270169- functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00007925g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.7|0.72|1|0.4|0.45|11|208|345; (*SWP) sp|Q8GY84|RH10_ARATH (e_value=2e-126) DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2;; (*TAIR) AT5G60990.1 (e_value=1e-127) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:24546601-24549148 REVERSE LENGTH=456;; (*ITAG) Solyc10g007550.2.1 (e_value=4e-151) genomic_reference:SL2.40ch10 gene_region:1854624-1864124 transcript_region:SL2.40ch10:1854624..1864124- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8B7Q7_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00043627g0007.1 protein AED:0.12 eAED:0.12 QI:110|1|1|1|1|1|3|348|337; (*SWP) sp|Q6TNS2|PK1IP_DANRE (e_value=4e-46) p21-activated protein kinase-interacting protein 1-like OS=Danio rerio GN=pak1ip1 PE=2 SV=1;; (*TAIR) AT1G65030.1 (e_value=2e-135) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:24156798-24158511 FORWARD LENGTH=345;; (*ITAG) Solyc02g078830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38062222-38065425 transcript_region:SL2.40ch02:38062222..38065425+ go_terms:GO:0005515,GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 **-- B2IZJ6_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00043627g0002.1 protein AED:0.16 eAED:0.17 QI:0|0|0.5|1|0|0.5|2|61|420; (*SWP) sp|O94432|YHKF_SCHPO (e_value=9e-23) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT3G15010.2 (e_value=2e-95) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:5052844-5054058 FORWARD LENGTH=404;; (*ITAG) Solyc02g021560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13906095-13908491 transcript_region:SL2.40ch02:13906095..13908491- go_terms:GO:0005515 functional_description:"Heterogeneous nuclear ribonucleoprotein A3-like protein 2 (AHRD V1 **-- B6TV58_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00044265g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|0|0|2|424|154; (*TAIR) AT2G23690.1 (e_value=1e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g065430.1.1 (e_value=7e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31167645-31168103 transcript_region:SL2.40ch02:31167645..31168103+ go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 **-- B6UG28_MAIZE)"; GO:0005515 NbS00036293g0008.1 protein AED:0.26 eAED:0.26 QI:193|1|1|1|0|0|2|701|82; (*ITAG) Solyc06g051760.2.1 (e_value=2e-23) genomic_reference:SL2.40ch06 gene_region:31855291-31863999 transcript_region:SL2.40ch06:31855291..31863999- go_terms:GO:0004057 functional_description:"Arginyl-tRNA--protein transferase 1 (AHRD V1 ***- B9SLM9_RICCO); contains Interpro domain(s) IPR017137 Arginine-tRNA-protein transferase 1, eukaryotic "; GO:0004057 NbS00036293g0001.1 protein AED:0.44 eAED:1.00 QI:0|0|0|1|1|1|2|0|94 NbS00002497g0011.1 protein AED:0.22 eAED:0.24 QI:0|0.71|0.5|1|0.85|0.75|8|427|619; (*TAIR) AT1G70160.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr1:26420159-26422345 FORWARD LENGTH=523;; (*ITAG) Solyc05g006400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1038916-1043766 transcript_region:SL2.40ch05:1038916..1043766- functional_description:"Genomic DNA chromosome 5 P1 clone MBG8 (AHRD V1 ***- Q9FFU3_ARATH)"; NbS00002497g0010.1 protein AED:0.41 eAED:0.41 QI:85|0.5|0.28|0.85|0.33|0.42|7|0|265; (*TAIR) AT1G70150.1 (e_value=2e-81) | Symbols: | zinc ion binding | chr1:26416898-26419521 FORWARD LENGTH=374;; (*ITAG) Solyc05g006410.2.1 (e_value=5e-120) genomic_reference:SL2.40ch05 gene_region:1044582-1047873 transcript_region:SL2.40ch05:1044582..1047873- go_terms:GO:0008270 functional_description:"Zinc finger MYND-type containing 15 (AHRD V1 ***- A2A642_MOUSE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0008270 NbS00002497g0014.1 protein AED:0.54 eAED:0.77 QI:0|0|0|0.66|0.5|0.66|3|0|94; (*ITAG) Solyc05g006410.2.1 (e_value=2e-16) genomic_reference:SL2.40ch05 gene_region:1044582-1047873 transcript_region:SL2.40ch05:1044582..1047873- go_terms:GO:0008270 functional_description:"Zinc finger MYND-type containing 15 (AHRD V1 ***- A2A642_MOUSE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0008270 NbS00002497g0117.1 protein AED:0.00 eAED:0.00 QI:408|1|1|1|1|1|2|49|802 NbS00002497g0114.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|75 NbS00002497g0116.1 protein AED:0.05 eAED:0.05 QI:334|1|1|1|1|1|5|409|262 NbS00002497g0104.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|551 NbS00002497g0118.1 protein AED:0.32 eAED:0.32 QI:379|0.5|0.33|1|1|1|3|0|163 NbS00002497g0103.1 protein AED:0.39 eAED:0.59 QI:653|0.25|0.2|1|0.75|0.6|5|0|181 NbS00002497g0202.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|228 NbS00002497g0217.1 protein AED:0.04 eAED:0.04 QI:231|1|0.75|1|0.33|0.25|4|0|417 NbS00002497g0216.1 protein AED:0.39 eAED:0.39 QI:235|0.43|0.52|0.88|0.56|0.64|17|232|386 NbS00002497g0219.1 protein AED:0.02 eAED:0.02 QI:180|1|1|1|0.66|0.5|4|694|428 NbS00002497g0223.1 protein AED:0.17 eAED:0.25 QI:0|0|0|1|0|0|4|0|265 NbS00010599g0009.1 protein AED:0.30 eAED:0.31 QI:334|0.80|0.81|1|0.71|0.77|22|0|1072; (*SWP) sp|Q9LKW9|NHX7_ARATH (e_value=0.0) Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1;; (*TAIR) AT2G01980.1 (e_value=0.0) | Symbols: SOS1, ATSOS1, ATNHX7 | sodium proton exchanger, putative (NHX7) (SOS1) | chr2:457070-463145 FORWARD LENGTH=1146;; (*ITAG) Solyc01g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:30620-43938 transcript_region:SL2.40ch01:30620..43938- go_terms:GO:0005515,GO:0015385 functional_description:"Sodium/hydrogen exchanger Na+ H+ antiporter (AHRD V1 *--* Q8IET0_PLAF7); contains Interpro domain(s) IPR018418 Na+/H+ exchanger, isoforms 7/8, conserved region "; GO:0005515,GO:0015385 NbS00016935g0007.1 protein AED:0.21 eAED:0.21 QI:286|0.66|0.71|1|0.5|0.57|7|1600|119; (*ITAG) Solyc11g010560.1.1 (e_value=7e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00016935g0002.1 protein AED:0.26 eAED:0.26 QI:309|0|0.5|1|0|0.5|2|0|244; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=8e-40) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=6e-41) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc11g011890.1.1 (e_value=5e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4830659-4831399 transcript_region:SL2.40ch11:4830659..4831399- go_terms:GO:0005622 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00016935g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|152; (*TAIR) AT4G05230.1 (e_value=1e-24) | Symbols: | Ubiquitin-like superfamily protein | chr4:2687003-2687623 FORWARD LENGTH=206;; (*ITAG) Solyc11g011900.1.1 (e_value=2e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4839147-4840001 transcript_region:SL2.40ch11:4839147..4840001+ functional_description:"Ubiquitin family protein (AHRD V1 ***- B6TU98_MAIZE); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; NbS00032730g0004.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.66|0.66|0.5|0.66|3|243|72 NbS00005024g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|136; (*SWP) sp|P46297|RS23_FRAAN (e_value=2e-94) 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1;; (*TAIR) AT5G02960.1 (e_value=1e-91) | Symbols: | Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142;; (*ITAG) Solyc10g086020.1.1 (e_value=8e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64331344-64333142 transcript_region:SL2.40ch10:64331344..64333142- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- RS12_MYCPU); contains Interpro domain(s) IPR005680 Ribosomal protein S23, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00005024g0011.1 protein AED:0.04 eAED:0.04 QI:30|1|0.75|1|1|1|4|0|187; (*TAIR) AT3G53320.1 (e_value=7e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast hits to 5993 proteins in 551 species: Archae - 8; Bacteria - 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses - 112; Other Eukaryotes - 3198 (source: NCBI BLink). | chr3:19769397-19772278 REVERSE LENGTH=553;; (*ITAG) Solyc09g007340.2.1 (e_value=3e-93) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00005024g0014.1 protein AED:0.45 eAED:0.77 QI:0|1|0|1|1|0.5|2|0|467; (*ITAG) Solyc09g007340.2.1 (e_value=8e-134) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00045835g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|542; (*SWP) sp|Q0WVU0|PP278_ARATH (e_value=6e-148) Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1;; (*TAIR) AT3G51320.1 (e_value=4e-149) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:19049853-19051445 REVERSE LENGTH=530;; (*ITAG) Solyc11g012570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5376206-5377810 transcript_region:SL2.40ch11:5376206..5377810- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00045835g0011.1 protein AED:0.01 eAED:0.01 QI:105|1|1|1|0|0.33|3|347|127; (*SWP) sp|Q94CD8|E134_ARATH (e_value=9e-25) Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1;; (*TAIR) AT5G35740.1 (e_value=7e-47) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr5:13910572-13911095 REVERSE LENGTH=119;; (*ITAG) Solyc11g012580.1.1 (e_value=6e-71) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5379368-5380451 transcript_region:SL2.40ch11:5379368..5380451+ functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6UBU1_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00045835g0014.1 protein AED:0.04 eAED:0.04 QI:289|0.5|0.66|1|1|1|3|1107|172; (*ITAG) Solyc11g012540.1.1 (e_value=4e-64) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00039647g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|138; (*ITAG) Solyc01g109100.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:87904346-87904843 transcript_region:SL2.40ch01:87904346..87904843+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039647g0001.1 protein AED:0.12 eAED:0.13 QI:0|0.87|0.66|1|1|1|9|0|922; (*SWP) sp|P49082|GPA1_LOTJA (e_value=9e-35) Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1;; (*TAIR) AT2G23460.1 (e_value=0.0) | Symbols: XLG1, ATXLG1 | extra-large G-protein 1 | chr2:9995699-9998945 FORWARD LENGTH=888;; (*ITAG) Solyc01g109110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87904937-87909600 transcript_region:SL2.40ch01:87904937..87909600- go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00030234g0005.1 protein AED:0.06 eAED:0.06 QI:119|1|1|1|1|1|2|137|433; (*SWP) sp|Q9FZI8|LCAT1_ARATH (e_value=2e-179) Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana GN=LCAT1 PE=2 SV=1;; (*TAIR) AT1G27480.1 (e_value=1e-180) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:9544607-9546168 FORWARD LENGTH=432;; (*ITAG) Solyc05g050710.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59984410-59987030 transcript_region:SL2.40ch05:59984410..59987030- go_terms:GO:0004622 functional_description:"Lecithin cholesterol acyltransferase (Fragment) (AHRD V1 *-*- Q8HZA0_9PRIM); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0004622 NbS00016850g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|180; (*TAIR) AT3G30530.1 (e_value=3e-50) | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper 42 | chr3:12139512-12140033 FORWARD LENGTH=173;; (*ITAG) Solyc02g089420.1.1 (e_value=6e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45834988-45835530 transcript_region:SL2.40ch02:45834988..45835530+ go_terms:GO:0046982,GO:0042803 functional_description:"BZip transcription factor (AHRD V1 ***- Q9AT29_PHAVU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbS00016850g0009.1 protein AED:0.21 eAED:0.21 QI:0|1|0.66|1|0.5|0.33|3|0|548; (*SWP) sp|Q9FWA4|GAUT9_ARATH (e_value=0.0) Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1;; (*TAIR) AT3G02350.1 (e_value=0.0) | Symbols: GAUT9 | galacturonosyltransferase 9 | chr3:479248-481178 FORWARD LENGTH=561;; (*ITAG) Solyc02g089440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45843022-45845794 transcript_region:SL2.40ch02:45843022..45845794+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00016850g0010.1 protein AED:0.29 eAED:0.36 QI:0|0|0|1|0|0|2|0|120; (*ITAG) Solyc02g089460.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45850987-45851292 transcript_region:SL2.40ch02:45850987..45851292- functional_description:"Unknown Protein (AHRD V1)"; NbS00047209g0002.1 protein AED:0.38 eAED:0.38 QI:76|-1|0|1|-1|0|1|0|46 NbS00011700g0001.1 protein AED:0.02 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|100; (*TAIR) AT1G11760.1 (e_value=8e-19) | Symbols: MED32 | MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3972356-3972811 REVERSE LENGTH=151;; (*ITAG) Solyc09g082740.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:63827410-63827697 transcript_region:SL2.40ch09:63827410..63827697- functional_description:"Unknown Protein (AHRD V1)"; NbS00011700g0003.1 protein AED:0.06 eAED:0.06 QI:787|-1|0|1|-1|1|1|642|126 NbS00011700g0010.1 protein AED:0.45 eAED:0.91 QI:0|0|0|0.66|0.5|1|3|0|139 NbS00023264g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|0|0|2|287|166; (*SWP) sp|O50003|RL12_PRUAR (e_value=4e-108) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=1e-105) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=4e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00009714g0008.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|134; (*TAIR) AT5G02160.1 (e_value=4e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:426392-427024 FORWARD LENGTH=129;; (*ITAG) Solyc10g086570.2.1 (e_value=3e-45) genomic_reference:SL2.40ch10 gene_region:64684179-64684888 transcript_region:SL2.40ch10:64684179..64684888- go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 **-- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00009714g0011.1 protein AED:0.20 eAED:0.20 QI:131|0.83|0.71|1|0.83|0.57|7|463|410; (*SWP) sp|Q40565|RCA2_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1;; (*TAIR) AT2G39730.2 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446;; (*ITAG) Solyc10g086580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64688483-64690961 transcript_region:SL2.40ch10:64688483..64690961- go_terms:GO:0005524 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 ***- Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524 NbS00015180g0014.1 protein AED:0.07 eAED:0.07 QI:183|1|1|1|0.92|0.86|15|229|661; (*SWP) sp|Q5TGY1|TMCO4_HUMAN (e_value=3e-46) Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1;; (*TAIR) AT4G36210.3 (e_value=0.0) | Symbols: | Protein of unknown function (DUF726) | chr4:17130354-17134302 FORWARD LENGTH=672;; (*ITAG) Solyc03g033640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00015180g0015.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.4|1|0.66|0.5|10|0|1355; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=6e-149) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT3G51120.1 (e_value=5e-150) | Symbols: | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292;; (*ITAG) Solyc02g084520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42188569-42192453 transcript_region:SL2.40ch02:42188569..42192453+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 19 (AHRD V1 *--- C3H19_ARATH); contains Interpro domain(s) IPR003169 GYF "; GO:0008270 NbS00015180g0013.1 protein AED:0.40 eAED:0.41 QI:0|1|0.5|1|0.66|0.75|4|0|246; (*TAIR) AT3G51100.1 (e_value=9e-37) | Symbols: | unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18980531-18982174 REVERSE LENGTH=211;; (*ITAG) Solyc02g084550.2.1 (e_value=1e-69) genomic_reference:SL2.40ch02 gene_region:42213475-42218473 transcript_region:SL2.40ch02:42213475..42218473+ go_terms:GO:0005874 functional_description:"Chromosome 10 contig 1 DNA sequence (AHRD V1 ***- Q00ZV5_OSTTA)"; GO:0005874 NbS00006821g0016.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|0.5|2|0|55; (*SWP) sp|O64530|STR1_ARATH (e_value=5e-25) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.1 (e_value=3e-26) | Symbols: ST1, ATMST1, MST1, ATRDH1, STR1 | mercaptopyruvate sulfurtransferase 1 | chr1:29800824-29803679 FORWARD LENGTH=379;; (*ITAG) Solyc07g066580.2.1 (e_value=9e-31) genomic_reference:SL2.40ch07 gene_region:65198760-65204479 transcript_region:SL2.40ch07:65198760..65204479+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like IPR001307 Thiosulphate sulfurtransferase, conserved site "; GO:0004792,GO:0016784 NbS00006821g0021.1 protein AED:0.21 eAED:0.21 QI:416|0.8|0.83|1|0.6|0.66|6|0|183; (*TAIR) AT1G56180.1 (e_value=4e-110) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 436 Blast hits to 436 proteins in 83 species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | chr1:21026243-21028047 REVERSE LENGTH=389;; (*ITAG) Solyc07g066620.2.1 (e_value=9e-125) genomic_reference:SL2.40ch07 gene_region:65212626-65216103 transcript_region:SL2.40ch07:65212626..65216103+ functional_description:"Os02g0169000 protein (Fragment) (AHRD V1 ***- Q0E3K5_ORYSJ)"; NbS00006821g0022.1 protein AED:0.09 eAED:0.09 QI:258|0.87|0.88|1|0.62|0.44|9|557|400; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=0.0) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=0.0) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00006821g0024.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.6|1|1|1|5|259|303; (*SWP) sp|Q9LTV6|DECR2_ARATH (e_value=2e-132) Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1;; (*TAIR) AT3G12800.1 (e_value=1e-133) | Symbols: SDRB, DECR | short-chain dehydrogenase-reductase B | chr3:4063463-4064757 REVERSE LENGTH=298;; (*ITAG) Solyc07g066630.2.1 (e_value=2e-160) genomic_reference:SL2.40ch07 gene_region:65216475-65219626 transcript_region:SL2.40ch07:65216475..65219626- go_terms:GO:0008670 functional_description:"Oxidoreductase short-chain dehydrogenase/reductase (AHRD V1 **-* A9ICB4_BORPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008670 NbS00006821g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.57|1|1|1|7|278|508; (*SWP) sp|Q42961|PGKH_TOBAC (e_value=0.0) Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G56190.1 (e_value=0.0) | Symbols: | Phosphoglycerate kinase family protein | chr1:21028403-21030454 FORWARD LENGTH=478;; (*ITAG) Solyc07g066610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65209792-65212260 transcript_region:SL2.40ch07:65209792..65212260- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- O81394_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00024104g0016.1 protein AED:0.11 eAED:0.13 QI:303|0.66|0.5|1|0.66|0.75|4|0|378; (*SWP) sp|Q8BT14|CNOT4_MOUSE (e_value=5e-12) CCR4-NOT transcription complex subunit 4 OS=Mus musculus GN=Cnot4 PE=1 SV=2;; (*TAIR) AT5G62910.1 (e_value=9e-56) | Symbols: | RING/U-box superfamily protein | chr5:25250830-25252015 FORWARD LENGTH=327;; (*ITAG) Solyc03g113700.2.1 (e_value=5e-145) genomic_reference:SL2.40ch03 gene_region:57821433-57823256 transcript_region:SL2.40ch03:57821433..57823256+ go_terms:GO:0008270 functional_description:"CCR4-NOT transcription complex subunit 4 (AHRD V1 *--- Q498M7_RAT); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00024104g0004.1 protein AED:0.16 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|569; (*SWP) sp|Q3E9B8|AB23G_ARATH (e_value=0.0) ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1;; (*TAIR) AT5G19410.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:6545237-6547111 REVERSE LENGTH=624;; (*ITAG) Solyc03g113690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57814675-57816651 transcript_region:SL2.40ch03:57814675..57816651+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 23 (AHRD V1 ***- AB23G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00024104g0006.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|154; (*SWP) sp|Q9C501|PPR70_ARATH (e_value=3e-22) Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1;; (*TAIR) AT1G33350.1 (e_value=2e-23) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:12090071-12091687 REVERSE LENGTH=538;; (*ITAG) Solyc06g066380.1.1 (e_value=1e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00024104g0018.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|754; (*SWP) sp|O04532|FH8_ARATH (e_value=2e-155) Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1;; (*TAIR) AT1G70140.1 (e_value=2e-156) | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26415048 REVERSE LENGTH=760;; (*ITAG) Solyc03g113710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57830474-57833099 transcript_region:SL2.40ch03:57830474..57833099- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00013552g0011.1 protein AED:0.09 eAED:0.09 QI:14|0.8|0.83|1|0.4|0.66|6|67|407; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc03g114890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58823668-58825512 transcript_region:SL2.40ch03:58823668..58825512+ functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00013552g0016.1 protein AED:0.10 eAED:0.10 QI:0|1|0.6|1|0.25|0.2|5|0|396; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=0.0) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=0.0) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc03g114900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58826189-58828118 transcript_region:SL2.40ch03:58826189..58828118+ functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00013552g0017.1 protein AED:0.08 eAED:0.08 QI:145|0.83|0.71|1|0.66|0.71|7|133|443; (*SWP) sp|Q9SRT7|COBL1_ARATH (e_value=0.0) COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1;; (*TAIR) AT3G02210.1 (e_value=0.0) | Symbols: COBL1 | COBRA-like protein 1 precursor | chr3:409352-411478 REVERSE LENGTH=452;; (*ITAG) Solyc03g114910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58828301-58831099 transcript_region:SL2.40ch03:58828301..58831099- functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00013552g0018.1 protein AED:0.23 eAED:0.23 QI:168|1|1|1|0.83|0.71|7|2419|291; (*SWP) sp|Q9KG32|Y283_BACHD (e_value=5e-68) Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1;; (*TAIR) AT4G02860.1 (e_value=7e-120) | Symbols: | Phenazine biosynthesis PhzC/PhzF protein | chr4:1268952-1270508 REVERSE LENGTH=313;; (*ITAG) Solyc09g064940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58086206-58088531 transcript_region:SL2.40ch09:58086206..58088531+ go_terms:GO:0009058 functional_description:"Phenazine biosynthesis protein PhzF family (AHRD V1 ***- B4VKV9_9CYAN); contains Interpro domain(s) IPR003719 Phenazine biosynthesis PhzC/PhzF protein "; GO:0009058 NbS00013552g0004.1 protein AED:0.48 eAED:0.57 QI:89|0|0.5|1|0|0.5|2|0|71 NbS00013552g0005.1 protein AED:0.82 eAED:1.00 QI:0|0|0|1|1|1|2|0|88 NbS00031123g0005.1 protein AED:0.37 eAED:0.37 QI:270|1|1|1|0.4|0.33|6|492|218; (*TAIR) AT5G12230.1 (e_value=6e-53) | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19480.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3953915-3955285 REVERSE LENGTH=221;; (*ITAG) Solyc09g020010.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:18306228-18307942 transcript_region:SL2.40ch09:18306228..18307942- functional_description:"Genomic DNA chromosome 5 P1 clone MXC9 (AHRD V1 *-*- Q9FMP0_ARATH)"; NbS00000223g0022.1 protein AED:0.06 eAED:0.06 QI:278|1|1|1|1|1|4|339|680; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=4e-74) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT2G45340.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:18691739-18694466 FORWARD LENGTH=691;; (*ITAG) Solyc01g091230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76667116-76670365 transcript_region:SL2.40ch01:76667116..76670365+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000223g0003.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|435; (*SWP) sp|O81312|GAE3_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1;; (*TAIR) AT4G00110.1 (e_value=0.0) | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 | chr4:38702-39994 REVERSE LENGTH=430;; (*ITAG) Solyc01g091200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76648646-76650521 transcript_region:SL2.40ch01:76648646..76650521+ go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00000223g0021.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.57|1|0.66|0.71|7|0|503; (*SWP) sp|P23981|AROA1_TOBAC (e_value=4e-158) 3-phosphoshikimate 1-carboxyvinyltransferase 1, chloroplastic OS=Nicotiana tabacum GN=EPSPS-1 PE=2 SV=1;; (*TAIR) AT2G45300.1 (e_value=1e-116) | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | chr2:18677518-18679868 FORWARD LENGTH=520;; (*ITAG) Solyc01g091190.2.1 (e_value=1e-139) genomic_reference:SL2.40ch01 gene_region:76636517-76643146 transcript_region:SL2.40ch01:76636517..76643146+ go_terms:GO:0003866,GO:0016765,GO:0003824 functional_description:"3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V1 ***- Q30CZ8_FAGSY); contains Interpro domain(s) IPR001986 3-phosphoshikimate 1-carboxyvinyltransferase, core "; GO:0003866,GO:0016765,GO:0003824 NbS00000223g0029.1 protein AED:0.23 eAED:0.23 QI:0|0.85|0.62|1|1|1|8|683|303; (*SWP) sp|Q5EAR5|TRPT1_DANRE (e_value=3e-41) tRNA 2'-phosphotransferase 1 OS=Danio rerio GN=trpt1 PE=2 SV=2;; (*TAIR) AT2G45330.2 (e_value=3e-116) | Symbols: emb1067 | RNA 2'-phosphotransferase, Tpt1 / KptA family | chr2:18686340-18687874 FORWARD LENGTH=286;; (*ITAG) Solyc01g091210.2.1 (e_value=3e-152) genomic_reference:SL2.40ch01 gene_region:76652503-76658043 transcript_region:SL2.40ch01:76652503..76658043- go_terms:GO:0006388 functional_description:"tRNA 2&apos-phosphotransferase (AHRD V1 ***- B6K5D9_SCHJY); contains Interpro domain(s) IPR002745 Phosphotransferase KptA/Tpt1 "; GO:0006388 NbS00000223g0007.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|387; (*SWP) sp|O22137|PP202_ARATH (e_value=1e-131) Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2;; (*TAIR) AT2G45350.1 (e_value=8e-133) | Symbols: CRR4 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:18694816-18696657 REVERSE LENGTH=613;; (*ITAG) Solyc01g091240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76671874-76674001 transcript_region:SL2.40ch01:76671874..76674001- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000223g0008.1 protein AED:0.28 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|323; (*SWP) sp|O22137|PP202_ARATH (e_value=8e-113) Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2;; (*TAIR) AT2G45350.1 (e_value=6e-114) | Symbols: CRR4 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:18694816-18696657 REVERSE LENGTH=613;; (*ITAG) Solyc01g091240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76671874-76674001 transcript_region:SL2.40ch01:76671874..76674001- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000223g0005.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|4|0|156; (*SWP) sp|P62302|RS13_SOYBN (e_value=2e-89) 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1;; (*TAIR) AT4G00100.1 (e_value=5e-87) | Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151;; (*ITAG) Solyc11g072260.1.1 (e_value=2e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52550756-52553441 transcript_region:SL2.40ch11:52550756..52553441- go_terms:GO:0005840 functional_description:"40S ribosomal protein S13 (AHRD V1 ***- D7LRU2_ARALY); contains Interpro domain(s) IPR000589 Ribosomal protein S15 "; GO:0005840 NbS00000223g0031.1 protein AED:0.56 eAED:0.63 QI:44|0.33|0|0.75|1|0.75|4|0|86 NbS00025003g0003.1 protein AED:0.17 eAED:0.17 QI:12|1|0.66|1|0.5|0.66|3|0|76; (*TAIR) AT3G03320.1 (e_value=1e-15) | Symbols: | RNA-binding ASCH domain protein | chr3:781872-783289 FORWARD LENGTH=244;; (*ITAG) Solyc06g073130.2.1 (e_value=6e-28) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00040309g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|63|445; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=1e-40) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT4G38900.3 (e_value=3e-93) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:18139564-18141520 REVERSE LENGTH=547;; (*ITAG) Solyc04g081190.2.1 (e_value=1e-165) genomic_reference:SL2.40ch04 gene_region:62784623-62788098 transcript_region:SL2.40ch04:62784623..62788098+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00040309g0001.1 protein AED:0.21 eAED:0.21 QI:37|1|0.5|1|1|1|2|0|333; (*SWP) sp|Q8L999|BPC6_ARATH (e_value=2e-124) Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1;; (*TAIR) AT5G42520.1 (e_value=2e-125) | Symbols: BPC6, BBR/BPC6, ATBPC6 | basic pentacysteine 6 | chr5:17001287-17002466 FORWARD LENGTH=342;; (*ITAG) Solyc04g081170.2.1 (e_value=4e-164) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00015511g0015.1 protein AED:0.29 eAED:0.42 QI:0|0|0|0.75|0.42|0.62|8|0|379; (*ITAG) Solyc08g006480.2.1 (e_value=5e-109) genomic_reference:SL2.40ch08 gene_region:1068145-1081065 transcript_region:SL2.40ch08:1068145..1081065- functional_description:"Unknown Protein (AHRD V1)"; NbS00015511g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.75|1|1|1|4|4|267; (*SWP) sp|Q91VY9|ZN622_MOUSE (e_value=2e-20) Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1;; (*TAIR) AT4G31420.1 (e_value=5e-101) | Symbols: | Zinc finger protein 622 | chr4:15245987-15247763 REVERSE LENGTH=404;; (*ITAG) Solyc12g096450.1.1 (e_value=2e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00015511g0011.1 protein AED:0.20 eAED:0.20 QI:179|0.75|0.8|1|0.75|0.6|5|534|470; (*TAIR) AT5G10650.2 (e_value=1e-51) | Symbols: | RING/U-box superfamily protein | chr5:3365237-3367263 REVERSE LENGTH=525;; (*ITAG) Solyc08g006460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1062022-1065021 transcript_region:SL2.40ch08:1062022..1065021+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00015511g0010.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|101; (*TAIR) AT2G24500.1 (e_value=2e-22) | Symbols: FZF | Zinc finger protein 622 | chr2:10401259-10402805 REVERSE LENGTH=395;; (*ITAG) Solyc12g096450.1.1 (e_value=8e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00020551g0027.1 protein AED:0.11 eAED:0.11 QI:729|1|1|1|0.62|0.55|9|481|30 NbS00020551g0024.1 protein AED:0.12 eAED:0.12 QI:43|0.66|0.57|1|0.66|0.57|7|0|454; (*SWP) sp|P92934|AAP6_ARATH (e_value=0.0) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=0.0) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc01g106800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86319498-86323512 transcript_region:SL2.40ch01:86319498..86323512- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00020551g0020.1 protein AED:0.18 eAED:0.18 QI:112|1|0.9|1|0.77|0.9|10|104|443; (*SWP) sp|Q28E45|MCM10_XENTR (e_value=1e-25) Protein MCM10 homolog OS=Xenopus tropicalis GN=mcm10 PE=2 SV=1;; (*TAIR) AT2G20980.1 (e_value=6e-134) | Symbols: MCM10 | minichromosome maintenance 10 | chr2:9011654-9013856 REVERSE LENGTH=396;; (*ITAG) Solyc01g111550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89541439-89545271 transcript_region:SL2.40ch01:89541439..89545271+ go_terms:GO:0005634 functional_description:"Protein MCM10 homolog (AHRD V1 *--- MCM10_XENTR); contains Interpro domain(s) IPR015408 Zinc finger, Mcm10/DnaG-type "; GO:0005634 NbS00020551g0025.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.28|0.85|0.5|0.57|7|0|287; (*ITAG) Solyc01g073870.2.1 (e_value=7e-73) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00020551g0029.1 protein AED:0.17 eAED:0.17 QI:0|0.81|0.64|1|0.81|0.88|17|0|700; (*SWP) sp|Q75HQ3|BGAL7_ORYSJ (e_value=0.0) Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1;; (*TAIR) AT2G16730.1 (e_value=2e-150) | Symbols: BGAL13 | glycosyl hydrolase family 35 protein | chr2:7261986-7266105 REVERSE LENGTH=848;; (*ITAG) Solyc01g111540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89534439-89539652 transcript_region:SL2.40ch01:89534439..89539652+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B2LYJ4_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00020551g0022.1 protein AED:0.29 eAED:0.29 QI:271|1|1|1|0.75|0.6|5|380|215; (*TAIR) AT1G50020.1 (e_value=5e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:18520144-18521600 REVERSE LENGTH=209;; (*ITAG) Solyc01g106790.2.1 (e_value=3e-110) genomic_reference:SL2.40ch01 gene_region:86315399-86318874 transcript_region:SL2.40ch01:86315399..86318874+ functional_description:"Tubulin alpha-6 chain (AHRD V1 **-- B6SR73_MAIZE)"; NbS00013569g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0.5|2|0|275; (*TAIR) AT5G04700.1 (e_value=8e-17) | Symbols: | Ankyrin repeat family protein | chr5:1354240-1356754 REVERSE LENGTH=669;; (*ITAG) Solyc05g041440.2.1 (e_value=4e-40) genomic_reference:SL2.40ch05 gene_region:50947911-50949818 transcript_region:SL2.40ch05:50947911..50949818- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH)"; GO:0005515 NbS00014471g0013.1 protein AED:0.00 eAED:0.00 QI:786|1|1|1|1|1|4|622|296; (*TAIR) AT4G30630.1 (e_value=5e-13) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57910.1); Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14951048-14952159 FORWARD LENGTH=237;; (*ITAG) Solyc12g009970.1.1 (e_value=5e-133) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3120151-3122378 transcript_region:SL2.40ch12:3120151..3122378- functional_description:"Unknown Protein (AHRD V1)"; NbS00014471g0015.1 protein AED:0.01 eAED:0.01 QI:183|1|1|1|1|1|2|60|437; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=0.0) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-179) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc07g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:607977-611742 transcript_region:SL2.40ch07:607977..611742- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* B2Z6Q6_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00014471g0004.1 protein AED:0.08 eAED:0.11 QI:999|0.88|0.9|1|0.66|0.6|10|312|360; (*SWP) sp|Q9U5L1|SRPR_DROME (e_value=9e-129) Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2;; (*TAIR) AT4G30600.1 (e_value=0.0) | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634;; (*ITAG) Solyc12g009990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3132677-3136254 transcript_region:SL2.40ch12:3132677..3136254+ go_terms:GO:0017111,GO:0006614,GO:0005785 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1GCL3_PARBD); contains Interpro domain(s) IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal "; GO:0017111,GO:0006614,GO:0005785 NbS00014471g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|256; (*SWP) sp|Q03387|IF41_WHEAT (e_value=6e-61) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.2 (e_value=6e-70) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=776;; (*ITAG) Solyc12g009960.1.1 (e_value=9e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00014471g0021.1 protein AED:0.41 eAED:0.41 QI:0|0.5|0.36|0.63|0.9|0.81|11|0|511; (*SWP) sp|Q03387|IF41_WHEAT (e_value=0.0) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.1 (e_value=0.0) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780;; (*ITAG) Solyc12g009960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00014471g0022.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0|3|0|136; (*SWP) sp|Q93V93|PER44_ARATH (e_value=1e-44) Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1;; (*TAIR) AT4G26010.1 (e_value=9e-46) | Symbols: | Peroxidase superfamily protein | chr4:13200653-13201688 FORWARD LENGTH=310;; (*ITAG) Solyc12g009950.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3107200-3108621 transcript_region:SL2.40ch12:3107200..3108621+ go_terms:GO:0055114 functional_description:"Peroxidase 57 (AHRD V1 ***- D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00014471g0023.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|133; (*SWP) sp|Q43729|PER57_ARATH (e_value=3e-34) Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1;; (*TAIR) AT5G17820.1 (e_value=2e-35) | Symbols: | Peroxidase superfamily protein | chr5:5888195-5890101 REVERSE LENGTH=313;; (*ITAG) Solyc12g009950.1.1 (e_value=3e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3107200-3108621 transcript_region:SL2.40ch12:3107200..3108621+ go_terms:GO:0055114 functional_description:"Peroxidase 57 (AHRD V1 ***- D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00014471g0017.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|0|95; (*SWP) sp|P36442|PSBE_MESCR (e_value=4e-21) Cytochrome b559 subunit alpha OS=Mesembryanthemum crystallinum GN=psbE PE=3 SV=2;; (*ITAG) ATCG00580.1 (e_value=4e-22) | Symbols: PSBE | photosystem II reaction center protein E | chrC:64071-64322 REVERSE LENGTH=83;; (*ITAG) Solyc10g045230.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:27773433-27773813 transcript_region:SL2.40ch10:27773433..27773813- go_terms:GO:0030096,GO:0016021 functional_description:"Cytochrome b559 subunit alpha (AHRD V1 ***- D7KRH8_ARALY); contains Interpro domain(s) IPR006217 Photosystem II protein cytochrome b559, alpha subunit "; GO:0030096,GO:0016021 NbS00009283g0025.1 protein AED:0.36 eAED:0.36 QI:680|1|1|1|1|1|2|196|62 NbS00009283g0026.1 protein AED:0.41 eAED:0.47 QI:0|0.5|0.4|1|0.75|0.6|5|0|224; (*SWP) sp|P27450|CX32_ARATH (e_value=1e-70) Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2;; (*TAIR) AT2G17220.2 (e_value=1e-79) | Symbols: | Protein kinase superfamily protein | chr2:7487866-7489768 REVERSE LENGTH=413;; (*ITAG) Solyc00g007060.2.1 (e_value=2e-101) genomic_reference:SL2.40ch00 gene_region:6674808-6680369 transcript_region:SL2.40ch00:6674808..6680369- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009283g0022.1 protein AED:0.09 eAED:0.09 QI:462|0.75|0.6|1|0.5|0.4|5|321|526; (*SWP) sp|Q6GPJ5|LRC40_XENLA (e_value=4e-40) Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1;; (*TAIR) AT4G35470.1 (e_value=0.0) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc00g007300.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6935594-6938269 transcript_region:SL2.40ch00:6935594..6938269- go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00009283g0027.1 protein AED:0.15 eAED:0.15 QI:134|1|1|1|0.8|0.5|6|323|185; (*TAIR) AT4G35530.1 (e_value=1e-60) | Symbols: | phosphatidylinositolglycan-related | chr4:16871925-16873280 REVERSE LENGTH=195;; (*ITAG) Solyc00g007090.2.1 (e_value=2e-120) genomic_reference:SL2.40ch00 gene_region:6702334-6706142 transcript_region:SL2.40ch00:6702334..6706142+ functional_description:"Multi-pass transmembrane protein (AHRD V1 *--- Q5CMR0_CRYHO); contains Interpro domain(s) IPR019328 GPI-GlcNAc transferase complex, PIG-H component "; NbS00009283g0020.1 protein AED:0.30 eAED:0.30 QI:265|1|0.95|1|0.73|0.8|20|59|626; (*SWP) sp|Q6GM29|SAC1_XENLA (e_value=1e-119) Phosphatidylinositide phosphatase SAC1 OS=Xenopus laevis GN=sacm1l PE=2 SV=1;; (*TAIR) AT5G66020.1 (e_value=0.0) | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | Phosphoinositide phosphatase family protein | chr5:26401193-26404691 REVERSE LENGTH=593;; (*ITAG) Solyc00g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6556570-6569989 transcript_region:SL2.40ch00:6556570..6569989- go_terms:GO:0004439,GO:0043812 functional_description:"Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439,GO:0043812 NbS00009283g0029.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|0|0|4|0|266; (*ITAG) Solyc00g112190.2.1 (e_value=1e-78) genomic_reference:SL2.40ch00 gene_region:16182668-16183977 transcript_region:SL2.40ch00:16182668..16183977- functional_description:"Unknown Protein (AHRD V1)"; NbS00009283g0023.1 protein AED:0.49 eAED:0.55 QI:0|0|0|1|0|0|3|0|153; (*ITAG) Solyc10g050410.1.1 (e_value=3e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:45125433-45126730 transcript_region:SL2.40ch10:45125433..45126730- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 **-- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00009283g0024.1 protein AED:0.45 eAED:0.50 QI:0|0|0|1|0|0|2|0|71 NbS00019582g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.93|1|0.86|0.93|16|431|499; (*SWP) sp|Q7RTR2|NLRC3_HUMAN (e_value=4e-48) Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2;; (*TAIR) AT1G10510.1 (e_value=0.0) | Symbols: emb2004 | RNI-like superfamily protein | chr1:3461771-3465590 FORWARD LENGTH=605;; (*ITAG) Solyc05g006170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:850717-856839 transcript_region:SL2.40ch05:850717..856839- functional_description:"NACHT, LRR and PYD domains-containing protein 5 (AHRD V1 *--- NALP5_BOVIN); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; NbS00019582g0004.1 protein AED:0.22 eAED:0.22 QI:137|1|1|1|0|0|4|299|104; (*SWP) sp|Q9LFR3|GASAE_ARATH (e_value=1e-21) Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1;; (*TAIR) AT5G14920.1 (e_value=1e-22) | Symbols: | Gibberellin-regulated family protein | chr5:4826598-4827761 FORWARD LENGTH=275;; (*ITAG) Solyc05g006160.2.1 (e_value=2e-35) genomic_reference:SL2.40ch05 gene_region:846758-847742 transcript_region:SL2.40ch05:846758..847742- go_terms:GO:0005515 functional_description:"Gibberellin-regulated protein 2 (AHRD V1 **-- B6TLZ8_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "; GO:0005515 NbS00038013g0003.1 protein AED:0.11 eAED:0.11 QI:126|0.8|1|1|1|1|11|646|619; (*SWP) sp|P0CZ23|ACOX3_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 3, peroxisomal OS=Arabidopsis thaliana GN=ACX3 PE=1 SV=1;; (*TAIR) AT1G06290.1 (e_value=0.0) | Symbols: ACX3, ATACX3 | acyl-CoA oxidase 3 | chr1:1922423-1926002 FORWARD LENGTH=675;; (*ITAG) Solyc10g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2239308-2246326 transcript_region:SL2.40ch10:2239308..2246326+ go_terms:GO:0016402 functional_description:"Acyl-CoA oxidase 6 (AHRD V1 **** D7KG21_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016402 NbS00002092g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.75|1|1|1|8|87|518; (*SWP) sp|P24859|SEC14_KLULA (e_value=2e-42) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G21540.2 (e_value=1e-175) | Symbols: ATSFH3, SFH3 | SEC14-like 3 | chr2:9220831-9223737 REVERSE LENGTH=548;; (*ITAG) Solyc10g053900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49676051-49680791 transcript_region:SL2.40ch10:49676051..49680791- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T027_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00001212g0016.1 protein AED:0.13 eAED:0.30 QI:0|1|0|1|1|1|3|0|326; (*SWP) sp|Q61161|M4K2_MOUSE (e_value=1e-13) Mitogen-activated protein kinase kinase kinase kinase 2 OS=Mus musculus GN=Map4k2 PE=1 SV=1;; (*TAIR) AT1G69220.1 (e_value=3e-47) | Symbols: SIK1 | Protein kinase superfamily protein | chr1:26020298-26026119 REVERSE LENGTH=836;; (*ITAG) Solyc05g012130.2.1 (e_value=2e-121) genomic_reference:SL2.40ch05 gene_region:5333154-5343576 transcript_region:SL2.40ch05:5333154..5343576- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001212g0013.1 protein AED:0.31 eAED:0.31 QI:172|1|1|1|0.5|0.33|3|242|112; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=3e-29) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=2e-30) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc05g012160.2.1 (e_value=1e-49) genomic_reference:SL2.40ch05 gene_region:5356573-5358187 transcript_region:SL2.40ch05:5356573..5358187- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00011075g0003.1 protein AED:0.18 eAED:0.18 QI:172|1|0.8|1|1|1|5|415|379; (*SWP) sp|Q9SB58|ZDH19_ARATH (e_value=2e-168) Probable S-acyltransferase At4g24630 OS=Arabidopsis thaliana GN=At4g24630 PE=1 SV=2;; (*TAIR) AT4G24630.1 (e_value=1e-169) | Symbols: | DHHC-type zinc finger family protein | chr4:12714919-12717111 FORWARD LENGTH=407;; (*ITAG) Solyc04g012030.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4361229-4366187 transcript_region:SL2.40ch04:4361229..4366187+ go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00009270g0004.1 protein AED:0.26 eAED:0.26 QI:55|1|0.83|1|1|1|6|0|299; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=3e-91) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=2e-92) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097580.2.1 (e_value=1e-178) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00009686g0001.1 protein AED:0.12 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|215; (*SWP) sp|Q8L868|E1311_ARATH (e_value=8e-89) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=6e-90) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc08g083310.2.1 (e_value=8e-118) genomic_reference:SL2.40ch08 gene_region:62979638-62981391 transcript_region:SL2.40ch08:62979638..62981391- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00009686g0013.1 protein AED:0.11 eAED:0.11 QI:325|0.83|0.85|1|0.83|0.85|7|413|413; (*TAIR) AT2G30530.1 (e_value=8e-90) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). | chr2:13009071-13010867 FORWARD LENGTH=371;; (*ITAG) Solyc09g055590.2.1 (e_value=1e-88) genomic_reference:SL2.40ch09 gene_region:37857627-37861491 transcript_region:SL2.40ch09:37857627..37861491- functional_description:"Unknown Protein (AHRD V1)"; NbS00009686g0010.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.5|0.33|3|0|524; (*TAIR) AT3G08600.1 (e_value=5e-39) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc06g060520.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34932821-34933723 transcript_region:SL2.40ch06:34932821..34933723- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00010575g0009.1 protein AED:0.07 eAED:0.08 QI:9|0.5|0.33|1|1|1|3|0|621; (*SWP) sp|Q9SL48|SLY1_ARATH (e_value=0.0) SEC1 family transport protein SLY1 OS=Arabidopsis thaliana GN=SLY1 PE=1 SV=1;; (*TAIR) AT2G17980.1 (e_value=0.0) | Symbols: ATSLY1 | Sec1/munc18-like (SM) proteins superfamily | chr2:7824352-7826404 FORWARD LENGTH=627;; (*ITAG) Solyc01g112150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89990409-89993077 transcript_region:SL2.40ch01:89990409..89993077- go_terms:GO:0051535 functional_description:"Sec1-1 syntaxin binding protein (AHRD V1 *--* Q3SEL6_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0051535 NbS00010575g0012.1 protein AED:0.08 eAED:0.08 QI:187|1|1|1|1|1|4|868|377; (*SWP) sp|Q8LFC0|IDH1_ARATH (e_value=0.0) Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2;; (*TAIR) AT4G35260.1 (e_value=0.0) | Symbols: IDH1, IDH-I | isocitrate dehydrogenase 1 | chr4:16774494-16776233 REVERSE LENGTH=367;; (*ITAG) Solyc10g074500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57374509-57382100 transcript_region:SL2.40ch10:57374509..57382100- go_terms:GO:0005739,GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- A3LYS8_PICST); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0005739,GO:0055114 NbS00013593g0005.1 protein AED:0.13 eAED:0.13 QI:636|1|1|1|1|1|3|664|342; (*SWP) sp|P46668|ATHB6_ARATH (e_value=3e-63) Homeobox-leucine zipper protein ATHB-6 OS=Arabidopsis thaliana GN=ATHB-6 PE=1 SV=1;; (*TAIR) AT2G22430.1 (e_value=2e-64) | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526470-9527612 REVERSE LENGTH=311;; (*ITAG) Solyc11g010270.1.1 (e_value=4e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3354569-3357081 transcript_region:SL2.40ch11:3354569..3357081- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00013593g0101.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|159 NbS00055578g0001.1 protein AED:0.38 eAED:0.47 QI:0|0.54|0.58|1|1|1|12|345|301; (*SWP) sp|O22315|SRSF1_ARATH (e_value=4e-76) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT3G49430.3 (e_value=1e-92) | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300;; (*ITAG) Solyc03g082380.2.1 (e_value=8e-104) genomic_reference:SL2.40ch03 gene_region:45864734-45871121 transcript_region:SL2.40ch03:45864734..45871121- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- B0WP07_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00027005g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|93; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=5e-36) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G74500.1 (e_value=3e-37) | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93;; (*ITAG) Solyc06g070910.2.1 (e_value=4e-39) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00034704g0005.1 protein AED:0.13 eAED:0.13 QI:333|0.5|0.6|1|1|1|5|0|192; (*SWP) sp|P21529|CBP3_HORVU (e_value=5e-84) Serine carboxypeptidase 3 OS=Hordeum vulgare GN=CBP3 PE=1 SV=2;; (*TAIR) AT3G45010.1 (e_value=4e-80) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc06g074850.2.1 (e_value=5e-103) genomic_reference:SL2.40ch06 gene_region:42773493-42776873 transcript_region:SL2.40ch06:42773493..42776873+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q2Z1Y2_PRUMU); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00034704g0008.1 protein AED:0.24 eAED:0.24 QI:329|0.5|0.71|0.85|0.83|1|7|130|204; (*SWP) sp|Q9FFB3|VP241_ARATH (e_value=7e-63) Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1;; (*TAIR) AT5G22950.1 (e_value=5e-64) | Symbols: VPS24.1 | SNF7 family protein | chr5:7681380-7682720 FORWARD LENGTH=229;; (*ITAG) Solyc06g074840.2.1 (e_value=5e-80) genomic_reference:SL2.40ch06 gene_region:42763787-42768999 transcript_region:SL2.40ch06:42763787..42768999+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 3 (AHRD V1 ***- B6SM72_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00000845g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|432; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=9e-65) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=2e-71) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc08g014490.1.1 (e_value=7e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:4520981-4522291 transcript_region:SL2.40ch08:4520981..4522291- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00010725g0004.1 protein AED:0.21 eAED:0.21 QI:164|1|0.66|1|1|1|3|0|134; (*TAIR) AT4G08240.1 (e_value=2e-32) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:5194713-5195756 FORWARD LENGTH=136;; (*ITAG) Solyc11g013020.1.1 (e_value=7e-68) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:5885626-5887917 transcript_region:SL2.40ch11:5885626..5887917- functional_description:"Unknown Protein (AHRD V1)"; NbS00051616g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|317; (*ITAG) Solyc05g008440.1.1 (e_value=1e-11) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:2797431-2798420 transcript_region:SL2.40ch05:2797431..2798420+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037233g0007.1 protein AED:0.41 eAED:0.43 QI:0|1|0.5|1|0|0|2|0|80; (*SWP) sp|Q2KIN1|DPM2_BOVIN (e_value=8e-23) Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3;; (*TAIR) AT1G74340.1 (e_value=2e-37) | Symbols: | dolichol phosphate-mannose biosynthesis regulatory protein-related | chr1:27948288-27948654 REVERSE LENGTH=80;; (*ITAG) Solyc06g066400.2.1 (e_value=5e-49) genomic_reference:SL2.40ch06 gene_region:38071407-38071975 transcript_region:SL2.40ch06:38071407..38071975- go_terms:GO:0005515,GO:0004582 functional_description:"Dolichol phosphate-mannose biosynthesis regulatory protein (AHRD V1 **** C3KJ11_ANOFI); contains Interpro domain(s) IPR009914 Dolichol phosphate-mannose biosynthesis regulatory "; GO:0005515,GO:0004582 NbS00037233g0008.1 protein AED:0.20 eAED:0.20 QI:0|1|0.85|1|1|1|7|457|273; (*SWP) sp|P93654|SYP22_ARATH (e_value=1e-137) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=1e-138) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc06g062360.2.1 (e_value=3e-174) genomic_reference:SL2.40ch06 gene_region:35717550-35722474 transcript_region:SL2.40ch06:35717550..35722474- go_terms:GO:0005484 functional_description:"Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00037233g0006.1 protein AED:0.26 eAED:0.28 QI:185|1|0.83|1|1|1|6|0|464; (*SWP) sp|Q6X5Y6|WRI1_ARATH (e_value=2e-84) Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1;; (*TAIR) AT3G54320.3 (e_value=1e-85) | Symbols: WRI1, WRI, ASML1 | Integrase-type DNA-binding superfamily protein | chr3:20114809-20118473 FORWARD LENGTH=430;; (*ITAG) Solyc06g066390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38069178-38070922 transcript_region:SL2.40ch06:38069178..38070922+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00037233g0012.1 protein AED:0.12 eAED:0.26 QI:37|0|0|1|0|0|2|0|67 NbS00051655g0004.1 protein AED:0.18 eAED:0.18 QI:1302|0.66|0.75|1|0.66|0.75|4|234|111 NbS00033006g0005.1 protein AED:0.12 eAED:0.29 QI:0|0.5|0|1|0|0|3|0|286; (*SWP) sp|P27898|MYBP_MAIZE (e_value=4e-24) Myb-related protein P OS=Zea mays GN=P PE=2 SV=1;; (*TAIR) AT2G47460.1 (e_value=9e-25) | Symbols: MYB12, ATMYB12, PFG1 | myb domain protein 12 | chr2:19476438-19479242 FORWARD LENGTH=371;; (*ITAG) Solyc01g079620.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:71255600-71258882 transcript_region:SL2.40ch01:71255600..71258882+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb 12 transcription factor (AHRD V1 **-- D2EBC3_9SOLN); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00033006g0004.1 protein AED:0.24 eAED:0.28 QI:0|0|0|1|0|0|3|0|106 NbS00019754g0003.1 protein AED:0.29 eAED:0.29 QI:177|1|0.5|1|0|0|2|0|272; (*SWP) sp|Q5SP67|WDR26_DANRE (e_value=3e-21) WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1;; (*TAIR) AT5G08560.2 (e_value=8e-71) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=3e-121) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00059541g0003.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|0|436; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=0.0) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=0.0) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc07g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:607977-611742 transcript_region:SL2.40ch07:607977..611742- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* B2Z6Q6_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00061325g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.14|0.12|1|0.14|0.25|8|0|1229; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g074000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57617787-57621291 transcript_region:SL2.40ch04:57617787..57621291- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00024713g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|164 NbS00041057g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|0|2|0|149; (*TAIR) AT3G18570.1 (e_value=6e-25) | Symbols: | Oleosin family protein | chr3:6396072-6396572 REVERSE LENGTH=166;; (*ITAG) Solyc03g119820.1.1 (e_value=3e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62444432-62444929 transcript_region:SL2.40ch03:62444432..62444929- go_terms:GO:0016021 functional_description:"Oleosin Bn-V (AHRD V1 ***- B6UIA7_MAIZE); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00055208g0007.1 protein AED:0.26 eAED:0.27 QI:0|0.8|0.63|0.90|0.5|0.72|11|0|321; (*TAIR) AT1G04960.1 (e_value=5e-107) | Symbols: | Protein of unknown function (DUF1664) | chr1:1408021-1410673 REVERSE LENGTH=317;; (*ITAG) Solyc08g082730.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62591302-62596193 transcript_region:SL2.40ch08:62591302..62596193+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00055208g0006.1 protein AED:0.25 eAED:0.25 QI:128|1|1|1|1|1|3|411|135; (*SWP) sp|P49964|SRP19_ORYSJ (e_value=1e-54) Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1;; (*TAIR) AT1G48160.1 (e_value=2e-54) | Symbols: | signal recognition particle 19 kDa protein, putative / SRP19, putative | chr1:17786779-17788286 REVERSE LENGTH=145;; (*ITAG) Solyc08g082740.2.1 (e_value=5e-76) genomic_reference:SL2.40ch08 gene_region:62596504-62603237 transcript_region:SL2.40ch08:62596504..62603237- go_terms:GO:0048500 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1C4T3_RANCA); contains Interpro domain(s) IPR002778 Signal recognition particle, SRP19 subunit "; GO:0048500 NbS00009199g0001.1 protein AED:0.37 eAED:0.37 QI:137|1|0.33|1|0|0.33|3|0|146; (*SWP) sp|Q9SUS5|RHA1B_ARATH (e_value=3e-14) E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1;; (*TAIR) AT2G04240.2 (e_value=2e-42) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162;; (*ITAG) Solyc05g018760.1.1 (e_value=2e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:23545736-23546098 transcript_region:SL2.40ch05:23545736..23546098- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q30D22_PONTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00009199g0005.1 protein AED:0.14 eAED:0.14 QI:391|0.9|0.81|1|0.8|0.63|11|0|767; (*TAIR) AT3G07660.1 (e_value=1e-106) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc05g018750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:23528108-23541786 transcript_region:SL2.40ch05:23528108..23541786+ functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 **-- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00009199g0003.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|61 NbS00009199g0107.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0.2|1|0.25|0.4|5|0|528 NbS00016882g0025.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0.5|2|881|286; (*TAIR) AT5G05550.2 (e_value=4e-47) | Symbols: | sequence-specific DNA binding transcription factors | chr5:1639529-1640550 REVERSE LENGTH=249;; (*ITAG) Solyc02g076810.2.1 (e_value=2e-129) genomic_reference:SL2.40ch02 gene_region:36499354-36503034 transcript_region:SL2.40ch02:36499354..36503034+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LW59_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00016882g0008.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|182; (*TAIR) AT1G29195.1 (e_value=5e-45) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10202673-10203254 REVERSE LENGTH=193;; (*ITAG) Solyc03g006160.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:818015-818560 transcript_region:SL2.40ch03:818015..818560+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016882g0029.1 protein AED:0.15 eAED:0.26 QI:0|0.16|0.14|1|0.16|0.28|7|75|376; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=7e-44) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=1e-46) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc02g076690.2.1 (e_value=2e-101) genomic_reference:SL2.40ch02 gene_region:36411106-36413774 transcript_region:SL2.40ch02:36411106..36413774- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00016882g0030.1 protein AED:0.26 eAED:0.30 QI:0|1|0.5|1|0.4|0.5|6|0|272; (*SWP) sp|Q05609|CTR1_ARATH (e_value=1e-72) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT2G31010.2 (e_value=2e-132) | Symbols: | Protein kinase superfamily protein | chr2:13194939-13199642 FORWARD LENGTH=775;; (*ITAG) Solyc02g076780.2.1 (e_value=4e-160) genomic_reference:SL2.40ch02 gene_region:36457518-36480448 transcript_region:SL2.40ch02:36457518..36480448+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LCX3_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016882g0005.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|217; (*SWP) sp|Q8S8E3|PYL6_ARATH (e_value=4e-52) Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1;; (*TAIR) AT2G40330.1 (e_value=3e-53) | Symbols: PYL6, RCAR9 | PYR1-like 6 | chr2:16845177-16845824 REVERSE LENGTH=215;; (*ITAG) Solyc02g076770.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36448795-36449451 transcript_region:SL2.40ch02:36448795..36449451- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL6 (AHRD V1 **-* PYL6_ARATH); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0004872,GO:0042803 NbS00016882g0010.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|0|0.5|2|409|181; (*TAIR) AT2G42610.2 (e_value=1e-82) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc02g076820.2.1 (e_value=2e-113) genomic_reference:SL2.40ch02 gene_region:36519341-36525157 transcript_region:SL2.40ch02:36519341..36525157+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00016882g0034.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.2|1|0.75|0.8|5|0|526; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=7e-110) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=9e-115) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc02g076710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36418834-36421805 transcript_region:SL2.40ch02:36418834..36421805- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00016882g0026.1 protein AED:0.16 eAED:0.16 QI:122|0.4|0.66|1|0.4|0.66|6|14|578; (*SWP) sp|P43297|RD21A_ARATH (e_value=4e-90) Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1;; (*TAIR) AT1G09850.1 (e_value=8e-103) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc02g076710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36418834-36421805 transcript_region:SL2.40ch02:36418834..36421805- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00018596g0011.1 protein AED:0.30 eAED:0.31 QI:0|1|0.5|1|0|0|2|0|131; (*TAIR) AT3G60520.1 (e_value=3e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22361751-22362467 REVERSE LENGTH=129;; (*ITAG) Solyc01g090740.2.1 (e_value=2e-60) genomic_reference:SL2.40ch01 gene_region:76141602-76142995 transcript_region:SL2.40ch01:76141602..76142995- functional_description:"Zinc ion binding protein (AHRD V1 ***- D7LRR6_ARALY)"; NbS00018596g0008.1 protein AED:0.06 eAED:0.06 QI:0|1|0.8|1|0.75|0.6|5|717|168; (*TAIR) AT3G15351.3 (e_value=6e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 43 Blast hits to 43 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5177026-5177531 FORWARD LENGTH=137;; (*ITAG) Solyc01g090720.2.1 (e_value=4e-65) genomic_reference:SL2.40ch01 gene_region:76114874-76119446 transcript_region:SL2.40ch01:76114874..76119446+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018596g0009.1 protein AED:0.10 eAED:0.23 QI:30|0|0|1|0|0|2|0|223; (*SWP) sp|Q8GXL3|SPL8_ARATH (e_value=7e-37) Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2;; (*TAIR) AT1G02065.2 (e_value=1e-38) | Symbols: SPL8 | squamosa promoter binding protein-like 8 | chr1:365625-366365 FORWARD LENGTH=246;; (*ITAG) Solyc01g090730.2.1 (e_value=1e-71) genomic_reference:SL2.40ch01 gene_region:76128945-76132811 transcript_region:SL2.40ch01:76128945..76132811+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 1 (AHRD V1 *-*- Q1MU24_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00053547g0010.1 protein AED:0.23 eAED:0.23 QI:57|0.65|0.80|0.95|0.8|0.85|21|664|722; (*TAIR) AT4G21150.3 (e_value=0.0) | Symbols: HAP6 | ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691;; (*ITAG) Solyc05g046330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:57707327-57721255 transcript_region:SL2.40ch05:57707327..57721255- go_terms:GO:0008250 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (AHRD V1 *--- RPN2_HUMAN); contains Interpro domain(s) IPR008814 Ribophorin II "; GO:0008250 NbS00053547g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|119 NbS00053547g0012.1 protein AED:0.23 eAED:0.32 QI:0|0|0|1|0|0|3|0|421; (*TAIR) AT5G13890.3 (e_value=7e-40) | Symbols: | Family of unknown function (DUF716) | chr5:4479940-4480872 REVERSE LENGTH=310;; (*ITAG) Solyc05g008590.2.1 (e_value=4e-62) genomic_reference:SL2.40ch05 gene_region:2912716-2917087 transcript_region:SL2.40ch05:2912716..2917087+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00062047g0006.1 protein AED:0.01 eAED:0.01 QI:233|1|1|1|1|1|2|324|220; (*SWP) sp|Q03662|GSTX1_TOBAC (e_value=1e-113) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09270.1 (e_value=7e-74) | Symbols: ATGSTU8, GSTU8 | glutathione S-transferase TAU 8 | chr3:2848407-2849226 REVERSE LENGTH=224;; (*ITAG) Solyc09g011630.2.1 (e_value=2e-124) genomic_reference:SL2.40ch09 gene_region:4888088-4889374 transcript_region:SL2.40ch09:4888088..4889374+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase-like protein (AHRD V1 **** A8DUB0_SOLLC); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00062047g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|158; (*ITAG) Solyc04g008880.2.1 (e_value=1e-30) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00026502g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|454; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=8e-113) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=2e-59) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g007480.1.1 (e_value=7e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1758242-1759603 transcript_region:SL2.40ch11:1758242..1759603- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *--- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00032690g0006.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.25|1|0.33|0|4|0|512; (*SWP) sp|O48922|C98A2_SOYBN (e_value=0.0) Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1;; (*TAIR) AT2G40890.1 (e_value=0.0) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc01g009370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:3557942-3564375 transcript_region:SL2.40ch01:3557942..3564375- go_terms:GO:0046409 functional_description:"Cytochrome P450"; GO:0046409 NbS00019384g0017.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0|0.75|0|0|4|0|132; (*SWP) sp|P14009|14KD_DAUCA (e_value=2e-17) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12490.1 (e_value=1e-19) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7409830-7410378 REVERSE LENGTH=182;; (*ITAG) Solyc06g060640.1.1 (e_value=1e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35052388-35052792 transcript_region:SL2.40ch06:35052388..35052792- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6T7W8_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00019384g0016.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|81 NbS00019384g0003.1 protein AED:0.05 eAED:0.05 QI:1169|0.5|0.4|1|1|0.8|5|0|428; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=0.0) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=0.0) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g060630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:35049005-35051647 transcript_region:SL2.40ch06:35049005..35051647+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00019384g0015.1 protein AED:0.10 eAED:0.10 QI:306|1|1|1|0.4|0.5|6|389|292; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=3e-63) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1;; (*TAIR) AT4G03270.1 (e_value=2e-64) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc03g006670.2.1 (e_value=2e-123) genomic_reference:SL2.40ch03 gene_region:1249821-1251626 transcript_region:SL2.40ch03:1249821..1251626+ go_terms:GO:0004693 functional_description:"Cyclin D1 (AHRD V1 **** Q8GVE0_HELTU); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004693 NbS00019384g0018.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0|3|0|612; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-63) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20820.1 (e_value=6e-89) | Symbols: | FAD-binding Berberine family protein | chr4:11150160-11151758 FORWARD LENGTH=532;; (*ITAG) Solyc02g079460.1.1 (e_value=3e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38590593-38592191 transcript_region:SL2.40ch02:38590593..38592191+ go_terms:GO:0055114,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0055114,GO:0050660 NbS00012241g0001.1 protein AED:0.37 eAED:0.43 QI:0|0|0|1|1|1|3|0|285; (*ITAG) Solyc09g091710.1.1 (e_value=9e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00012241g0012.1 protein AED:0.04 eAED:0.04 QI:134|1|1|1|0.5|0.33|3|481|346; (*ITAG) Solyc01g065690.2.1 (e_value=7e-169) genomic_reference:SL2.40ch01 gene_region:64673422-64675017 transcript_region:SL2.40ch01:64673422..64675017- go_terms:GO:0030001 functional_description:"Heavy-metal associated domain protein (AHRD V1 *--- C3SA91_BRADI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00012241g0016.1 protein AED:0.08 eAED:0.08 QI:290|0.8|0.66|1|0.6|0.5|6|321|353; (*SWP) sp|Q0WRB2|P2C73_ARATH (e_value=8e-139) Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1;; (*TAIR) AT5G27930.2 (e_value=6e-140) | Symbols: | Protein phosphatase 2C family protein | chr5:9958199-9960219 REVERSE LENGTH=373;; (*ITAG) Solyc01g065700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64680932-64684810 transcript_region:SL2.40ch01:64680932..64684810- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00012241g0014.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|3|0|278; (*SWP) sp|Q9M9W7|PME22_ARATH (e_value=3e-57) Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1;; (*TAIR) AT3G05620.1 (e_value=2e-58) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=543;; (*ITAG) Solyc00g023470.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12129957-12131086 transcript_region:SL2.40ch00:12129957..12131086+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8SCR0_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00025902g0001.1 protein AED:0.20 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|193; (*SWP) sp|O65499|ZAT3_ARATH (e_value=2e-31) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT4G35280.1 (e_value=1e-32) | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283 REVERSE LENGTH=284;; (*ITAG) Solyc06g060480.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34901141-34901950 transcript_region:SL2.40ch06:34901141..34901950- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00025902g0002.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|167; (*SWP) sp|Q8LGD5|MKS1_ARATH (e_value=1e-17) Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2;; (*TAIR) AT3G18690.1 (e_value=8e-19) | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222;; (*ITAG) Solyc06g060470.1.1 (e_value=2e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34887486-34888208 transcript_region:SL2.40ch06:34887486..34888208+ go_terms:GO:0005515 functional_description:"VQ motif family protein (AHRD V1 *-*- B6SZE5_MAIZE); contains Interpro domain(s) IPR008889 VQ "; GO:0005515 NbS00003334g0006.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|3|0|671; (*SWP) sp|Q9FMS5|MS1_ARATH (e_value=0.0) PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1;; (*TAIR) AT5G22260.1 (e_value=0.0) | Symbols: MS1 | RING/FYVE/PHD zinc finger superfamily protein | chr5:7367707-7370192 REVERSE LENGTH=672;; (*ITAG) Solyc04g008420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2038054-2041138 transcript_region:SL2.40ch04:2038054..2041138+ go_terms:GO:0003700 functional_description:"PHD finger family protein (AHRD V1 **-- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00003334g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|1136; (*SWP) sp|Q9ZPS9|BRL2_ARATH (e_value=0.0) Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1;; (*TAIR) AT2G01950.1 (e_value=0.0) | Symbols: VH1, BRL2 | BRI1-like 2 | chr2:440805-444236 REVERSE LENGTH=1143;; (*ITAG) Solyc04g008430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2048594-2051974 transcript_region:SL2.40ch04:2048594..2051974- go_terms:GO:0042802 functional_description:"Receptor like kinase, RLK"; GO:0042802 NbS00033573g0004.1 protein AED:0.03 eAED:0.04 QI:475|0|0.25|1|1|1|4|0|1103; (*SWP) sp|Q8VE18|SMG8_MOUSE (e_value=2e-21) Protein SMG8 OS=Mus musculus GN=Smg8 PE=2 SV=1;; (*ITAG) Solyc06g074810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42732547-42739779 transcript_region:SL2.40ch06:42732547..42739779+ functional_description:"Protein SMG8 (AHRD V1 *-*- SMG8_HUMAN); contains Interpro domain(s) IPR019354 Protein of unknown function DUF2146 "; NbS00049675g0003.1 protein AED:0.26 eAED:0.26 QI:96|1|1|1|0|0|3|302|308; (*TAIR) AT4G32480.1 (e_value=6e-47) | Symbols: | Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287;; (*ITAG) Solyc11g042630.1.1 (e_value=5e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:32780452-32785147 transcript_region:SL2.40ch11:32780452..32785147- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00037898g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|1|1|4|0|344; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=9e-51) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT2G36690.1 (e_value=2e-64) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc07g054930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60402209-60404401 transcript_region:SL2.40ch07:60402209..60404401- go_terms:GO:0016706,GO:0016682 functional_description:"2-oxoglutarate-iron(II)-dependent oxygenase (AHRD V1 **-* D8T1V3_SELML); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00004013g0003.1 protein AED:0.52 eAED:0.52 QI:174|0|0.5|0.5|1|1|2|0|71; (*ITAG) Solyc01g081420.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:73127309-73134141 transcript_region:SL2.40ch01:73127309..73134141+ functional_description:"Os04g0218600 protein (Fragment) (AHRD V1 *-*- Q0JER2_ORYSJ)"; NbS00004013g0005.1 protein AED:0.45 eAED:0.71 QI:0|0.2|0.16|0.83|1|1|6|0|277; (*ITAG) Solyc01g081430.2.1 (e_value=4e-66) genomic_reference:SL2.40ch01 gene_region:73136984-73157200 transcript_region:SL2.40ch01:73136984..73157200+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- Q108V0_ORYSJ)"; NbS00004013g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|405; (*TAIR) AT5G17640.1 (e_value=2e-178) | Symbols: | Protein of unknown function (DUF1005) | chr5:5811047-5812429 REVERSE LENGTH=432;; (*ITAG) Solyc01g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73157517-73159360 transcript_region:SL2.40ch01:73157517..73159360- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00019397g0001.1 protein AED:0.15 eAED:0.15 QI:423|0.75|0.8|1|0.5|0.8|5|0|191; (*ITAG) Solyc01g008680.2.1 (e_value=2e-90) genomic_reference:SL2.40ch01 gene_region:2734251-2739609 transcript_region:SL2.40ch01:2734251..2739609- functional_description:"S2 self-incompatibility locus-linked pollen 3.2 protein (AHRD V1 ***- Q7XAE8_PETIN)"; NbS00019397g0002.1 protein AED:0.05 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|208; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=2e-109) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=7e-63) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=9e-116) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044990g0002.1 protein AED:0.04 eAED:0.04 QI:333|0.66|0.57|1|1|1|7|326|449; (*SWP) sp|Q40460|RCA1_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT2G39730.1 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474;; (*ITAG) Solyc09g011080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4413327-4416467 transcript_region:SL2.40ch09:4413327..4416467- go_terms:GO:0046863 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0046863 NbS00059877g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|475; (*SWP) sp|Q9LEU7|CIPK5_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 5 OS=Arabidopsis thaliana GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G10930.1 (e_value=0.0) | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein kinase 5 | chr5:3445569-3446906 REVERSE LENGTH=445;; (*ITAG) Solyc08g067310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53594242-53595603 transcript_region:SL2.40ch08:53594242..53595603+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 6 (AHRD V1 ***- A0MNL4_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00016724g0002.1 protein AED:0.29 eAED:0.29 QI:130|1|1|1|1|1|3|478|357; (*SWP) sp|Q9SJA9|GDL39_ARATH (e_value=3e-117) GDSL esterase/lipase At2g24560 OS=Arabidopsis thaliana GN=At2g24560 PE=2 SV=2;; (*TAIR) AT2G24560.1 (e_value=2e-118) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:10431537-10432933 FORWARD LENGTH=363;; (*ITAG) Solyc04g007440.1.1 (e_value=6e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1108529-1111896 transcript_region:SL2.40ch04:1108529..1111896+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g58430 (AHRD V1 ***- GDL23_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00016724g0003.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|127; (*SWP) sp|Q8LD23|GDL4_ARATH (e_value=3e-35) GDSL esterase/lipase At1g20120 OS=Arabidopsis thaliana GN=At1g20120 PE=2 SV=2;; (*TAIR) AT1G20120.1 (e_value=2e-36) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:6975504-6977123 FORWARD LENGTH=402;; (*ITAG) Solyc04g007440.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1108529-1111896 transcript_region:SL2.40ch04:1108529..1111896+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g58430 (AHRD V1 ***- GDL23_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00016724g0005.1 protein AED:0.40 eAED:0.50 QI:0|0|0|1|1|1|2|0|64 NbS00016724g0009.1 protein AED:0.20 eAED:0.20 QI:364|1|1|1|1|1|2|277|267; (*TAIR) AT2G23810.1 (e_value=5e-122) | Symbols: TET8 | tetraspanin8 | chr2:10135859-10137352 REVERSE LENGTH=273;; (*ITAG) Solyc12g010570.1.1 (e_value=2e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3547559-3549840 transcript_region:SL2.40ch12:3547559..3549840+ go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B3TLS7_ELAGV); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00022605g0019.1 protein AED:0.21 eAED:0.21 QI:68|0.86|0.83|1|0.69|0.79|24|328|627; (*SWP) sp|Q9NZC9|SMAL1_HUMAN (e_value=1e-91) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 OS=Homo sapiens GN=SMARCAL1 PE=1 SV=1;; (*TAIR) AT1G48310.1 (e_value=0.0) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00022605g0016.1 protein AED:0.09 eAED:0.11 QI:0|1|0|1|1|1|2|0|399; (*TAIR) AT1G48300.1 (e_value=2e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:17847391-17848338 FORWARD LENGTH=285;; (*ITAG) Solyc12g098850.1.1 (e_value=8e-69) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64573773-64575494 transcript_region:SL2.40ch12:64573773..64575494+ functional_description:"Soluble diacylglycerol acyltransferase (AHRD V1 *-*- B9S020_RICCO); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00022605g0018.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|6|0|510; (*SWP) sp|Q9FWX8|AB12B_ARATH (e_value=0.0) ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2;; (*TAIR) AT1G02530.1 (e_value=0.0) | Symbols: PGP12 | P-glycoprotein 12 | chr1:529836-534542 FORWARD LENGTH=1273;; (*ITAG) Solyc12g098840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64566859-64572340 transcript_region:SL2.40ch12:64566859..64572340+ go_terms:GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00022605g0017.1 protein AED:0.15 eAED:0.15 QI:0|0.42|0.37|0.87|0.85|0.75|8|0|785; (*SWP) sp|Q9FWX7|AB11B_ARATH (e_value=0.0) ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1;; (*TAIR) AT1G02520.1 (e_value=0.0) | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278;; (*ITAG) Solyc12g098840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64566859-64572340 transcript_region:SL2.40ch12:64566859..64572340+ go_terms:GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00022605g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc12g098850.1.1 (e_value=1e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64573773-64575494 transcript_region:SL2.40ch12:64573773..64575494+ functional_description:"Soluble diacylglycerol acyltransferase (AHRD V1 *-*- B9S020_RICCO); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00035677g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|333; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=1e-37) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=9e-39) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc04g071160.2.1 (e_value=2e-66) genomic_reference:SL2.40ch04 gene_region:55672435-55678715 transcript_region:SL2.40ch04:55672435..55678715- go_terms:GO:0042802 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0042802 NbS00035245g0001.1 protein AED:0.47 eAED:0.49 QI:0|0|0|0.25|1|1|4|0|169; (*TAIR) AT1G05120.1 (e_value=1e-25) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc10g049740.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:42021073-42027978 transcript_region:SL2.40ch10:42021073..42027978+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00020701g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|724; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=0.0) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2;; (*TAIR) AT2G42620.1 (e_value=0.0) | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693;; (*ITAG) Solyc12g010900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3807527-3809695 transcript_region:SL2.40ch12:3807527..3809695+ functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00020701g0017.1 protein AED:0.15 eAED:0.15 QI:87|0.88|0.77|1|0.82|0.77|18|2883|838; (*SWP) sp|Q05609|CTR1_ARATH (e_value=4e-69) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT3G58640.2 (e_value=0.0) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc07g055130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60575268-60584663 transcript_region:SL2.40ch07:60575268..60584663- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00034668g0004.1 protein AED:0.39 eAED:0.42 QI:0|0.5|0.57|1|0.66|0.71|7|391|177; (*SWP) sp|Q944B0|FK161_ARATH (e_value=2e-46) Peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-1 PE=2 SV=1;; (*TAIR) AT4G26555.1 (e_value=2e-47) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr4:13404622-13406178 REVERSE LENGTH=207;; (*ITAG) Solyc10g005870.2.1 (e_value=2e-82) genomic_reference:SL2.40ch10 gene_region:665953-671107 transcript_region:SL2.40ch10:665953..671107+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- Q7V0G6_PROMP); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00004683g0006.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|205; (*TAIR) AT1G33800.1 (e_value=6e-79) | Symbols: | Protein of unknown function (DUF579) | chr1:12261480-12262456 FORWARD LENGTH=297;; (*ITAG) Solyc06g064800.1.1 (e_value=3e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36770123-36770917 transcript_region:SL2.40ch06:36770123..36770917+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00004683g0012.1 protein AED:0.37 eAED:0.37 QI:181|1|1|1|1|1|3|457|137; (*TAIR) AT1G33810.1 (e_value=3e-61) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12265084-12266655 FORWARD LENGTH=138;; (*ITAG) Solyc06g064810.2.1 (e_value=6e-91) genomic_reference:SL2.40ch06 gene_region:36771327-36775760 transcript_region:SL2.40ch06:36771327..36775760+ functional_description:"Chromosome 06 contig 1 DNA sequence (AHRD V1 ***- Q016E2_OSTTA)"; NbS00004683g0014.1 protein AED:0.07 eAED:0.07 QI:183|1|1|1|0.86|0.93|16|341|514; (*SWP) sp|Q5ZME8|SMU1_CHICK (e_value=0.0) WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1;; (*TAIR) AT1G73720.1 (e_value=0.0) | Symbols: SMU1 | transducin family protein / WD-40 repeat family protein | chr1:27725059-27729722 FORWARD LENGTH=511;; (*ITAG) Solyc06g064830.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36785363-36796963 transcript_region:SL2.40ch06:36785363..36796963- go_terms:GO:0003714 functional_description:"WD-40 repeat protein (AHRD V1 **-- Q94IP9_SOLLC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00004683g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.2|1|0.25|0.4|5|0|292; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=2e-104) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.2 (e_value=2e-105) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951480 REVERSE LENGTH=384;; (*ITAG) Solyc11g032050.1.1 (e_value=1e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:20989195-20993340 transcript_region:SL2.40ch11:20989195..20993340+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00004683g0108.1 protein AED:0.15 eAED:0.15 QI:0|1|0.85|1|1|1|7|0|228 NbS00004683g0103.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.33|1|0.33|3|0|168 NbS00049120g0016.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|0.5|0.66|3|0|567; (*SWP) sp|O65677|KCS2_ARATH (e_value=9e-115) Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1;; (*TAIR) AT4G34510.1 (e_value=7e-116) | Symbols: KCS17 | 3-ketoacyl-CoA synthase 17 | chr4:16491796-16493259 FORWARD LENGTH=487;; (*ITAG) Solyc12g056720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48164692-48167808 transcript_region:SL2.40ch12:48164692..48167808+ go_terms:GO:0016020,GO:0008415,GO:0008152 functional_description:"3-ketoacyl-CoA synthase 2 (AHRD V1 ***- D7MF06_ARALY); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0016020,GO:0008415,GO:0008152 NbS00049120g0015.1 protein AED:0.25 eAED:0.25 QI:0|1|0.77|1|1|1|9|0|627; (*SWP) sp|Q56X76|RH39_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2;; (*TAIR) AT4G09730.1 (e_value=0.0) | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD LENGTH=621;; (*ITAG) Solyc12g056740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48175106-48181151 transcript_region:SL2.40ch12:48175106..48181151- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- D3BPQ9_POLPA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00049120g0017.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|3|0|1070; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT1G34110.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:12417331-12421246 REVERSE LENGTH=1072;; (*ITAG) Solyc12g056730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48170555-48174218 transcript_region:SL2.40ch12:48170555..48174218+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00013081g0003.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0|2|0|72 NbS00020940g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|238; (*SWP) sp|P0C035|ATL60_ARATH (e_value=7e-30) RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1;; (*TAIR) AT1G53820.1 (e_value=5e-31) | Symbols: | RING/U-box superfamily protein | chr1:20091491-20092423 FORWARD LENGTH=310;; (*ITAG) Solyc12g055710.1.1 (e_value=7e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47038935-47039699 transcript_region:SL2.40ch12:47038935..47039699- go_terms:GO:0008270 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020940g0014.1 protein AED:0.23 eAED:0.24 QI:52|0.75|0.61|1|0.75|0.69|13|131|490; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=1e-148) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.1 (e_value=1e-149) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=719;; (*ITAG) Solyc12g055720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47042875-47052360 transcript_region:SL2.40ch12:47042875..47052360- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00020940g0005.1 protein AED:0.22 eAED:0.64 QI:0|0|0|1|1|1|2|0|173 NbS00020940g0012.1 protein AED:0.17 eAED:0.17 QI:114|0.8|0.72|0.90|0.9|0.81|11|0|474; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=0.0) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=0.0) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00020940g0013.1 protein AED:0.30 eAED:0.43 QI:60|0|0.5|1|1|0.5|2|557|51 NbS00024734g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.25|0.22|0.77|0.25|0.66|9|0|464; (*SWP) sp|Q8GYX3|MP705_ARATH (e_value=1e-79) Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1;; (*TAIR) AT4G17220.1 (e_value=1e-80) | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513;; (*ITAG) Solyc11g012660.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5432721-5437270 transcript_region:SL2.40ch11:5432721..5437270+ functional_description:"microtubule associated protein Type 5 (AHRD V1 **-- Q8GYX3_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; NbS00024734g0011.1 protein AED:0.13 eAED:0.15 QI:206|0.66|0.5|1|0|0|4|0|294; (*TAIR) AT4G16380.1 (e_value=1e-22) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:9254638-9255955 FORWARD LENGTH=254;; (*ITAG) Solyc05g054210.2.1 (e_value=5e-33) genomic_reference:SL2.40ch05 gene_region:63317491-63319450 transcript_region:SL2.40ch05:63317491..63319450- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00024734g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|587; (*SWP) sp|Q8GWE0|PP314_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3;; (*TAIR) AT4G16390.1 (e_value=0.0) | Symbols: SVR7 | pentatricopeptide (PPR) repeat-containing protein | chr4:9257985-9260093 FORWARD LENGTH=702;; (*ITAG) Solyc11g012670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5440678-5442747 transcript_region:SL2.40ch11:5440678..5442747- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00024734g0005.1 protein AED:0.48 eAED:0.86 QI:0|0|0|1|1|1|2|0|78 NbS00034017g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|173; (*ITAG) Solyc07g063170.1.1 (e_value=7e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:62950636-62951142 transcript_region:SL2.40ch07:62950636..62951142+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034017g0012.1 protein AED:0.15 eAED:0.16 QI:8|1|0.5|1|1|1|4|0|464; (*SWP) sp|Q5QQ56|XYLT1_CANFA (e_value=8e-19) Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1;; (*TAIR) AT3G15350.2 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr3:5167250-5168882 FORWARD LENGTH=424;; (*ITAG) Solyc12g013850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4639057-4641430 transcript_region:SL2.40ch12:4639057..4641430- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00029402g0014.1 protein AED:0.00 eAED:0.00 QI:247|1|0.5|1|1|1|2|0|436; (*SWP) sp|Q9C7G1|PUB45_ARATH (e_value=8e-16) U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1;; (*TAIR) AT2G27430.1 (e_value=9e-132) | Symbols: | ARM repeat superfamily protein | chr2:11729914-11733170 REVERSE LENGTH=438;; (*ITAG) Solyc02g076930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36615979-36619162 transcript_region:SL2.40ch02:36615979..36619162+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MAU3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00029402g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|340; (*SWP) sp|O65039|CYSEP_RICCO (e_value=2e-130) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G45890.1 (e_value=5e-139) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47343277-47344539 transcript_region:SL2.40ch12:47343277..47344539+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00029402g0016.1 protein AED:0.09 eAED:0.09 QI:179|0.8|0.83|1|0.4|0.5|6|0|246; (*SWP) sp|P53980|YNB1_YEAST (e_value=8e-34) Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C PE=1 SV=1;; (*TAIR) AT2G34090.2 (e_value=1e-100) | Symbols: MEE18 | maternal effect embryo arrest 18 | chr2:14396283-14399170 REVERSE LENGTH=471;; (*ITAG) Solyc02g076950.2.1 (e_value=2e-115) genomic_reference:SL2.40ch02 gene_region:36626803-36635169 transcript_region:SL2.40ch02:36626803..36635169+ functional_description:"UPF0052 domain protein (AHRD V1 **-- A1CBK9_ASPCL); contains Interpro domain(s) IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 "; NbS00029402g0002.1 protein AED:0.16 eAED:0.16 QI:241|1|0.6|1|0.75|0.6|5|302|358; (*ITAG) Solyc02g076940.1.1 (e_value=3e-114) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36623406-36625882 transcript_region:SL2.40ch02:36623406..36625882+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029402g0013.1 protein AED:0.05 eAED:0.20 QI:167|0|0.5|1|0|0.5|2|173|32 NbS00029402g0012.1 protein AED:0.24 eAED:0.24 QI:1|1|0|1|0|0.5|2|38|35 NbS00019580g0015.1 protein AED:0.00 eAED:0.00 QI:846|1|1|1|1|1|4|965|296; (*TAIR) AT5G57910.1 (e_value=1e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23451259-23452463 REVERSE LENGTH=207;; (*ITAG) Solyc12g009970.1.1 (e_value=3e-129) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3120151-3122378 transcript_region:SL2.40ch12:3120151..3122378- functional_description:"Unknown Protein (AHRD V1)"; NbS00019580g0020.1 protein AED:0.00 eAED:0.00 QI:340|1|1|1|1|1|2|312|103; (*SWP) sp|Q84ZC0|VATH_ORYSJ (e_value=4e-55) Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1;; (*TAIR) AT3G42050.1 (e_value=2e-53) | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441;; (*ITAG) Solyc12g009890.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3065309-3071939 transcript_region:SL2.40ch12:3065309..3071939+ go_terms:GO:0005515 functional_description:"Vacuolar ATPase subunit H protein (AHRD V1 ***- B6SIW6_MAIZE); contains Interpro domain(s) IPR004908 ATPase, V1 complex, subunit H "; GO:0005515 NbS00019580g0017.1 protein AED:0.01 eAED:0.01 QI:184|1|1|1|1|1|2|170|437; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=0.0) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=0.0) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc07g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:607977-611742 transcript_region:SL2.40ch07:607977..611742- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* B2Z6Q6_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00019580g0019.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|326; (*SWP) sp|Q43729|PER57_ARATH (e_value=3e-106) Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1;; (*TAIR) AT5G17820.1 (e_value=2e-107) | Symbols: | Peroxidase superfamily protein | chr5:5888195-5890101 REVERSE LENGTH=313;; (*ITAG) Solyc12g009950.1.1 (e_value=4e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3107200-3108621 transcript_region:SL2.40ch12:3107200..3108621+ go_terms:GO:0055114 functional_description:"Peroxidase 57 (AHRD V1 ***- D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00019580g0018.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|0.88|0.62|0.66|9|0|524; (*SWP) sp|Q03387|IF41_WHEAT (e_value=0.0) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.1 (e_value=0.0) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780;; (*ITAG) Solyc12g009960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00019580g0022.1 protein AED:0.33 eAED:0.51 QI:32|0.33|0|1|1|0.75|4|0|106; (*TAIR) AT4G30620.1 (e_value=1e-46) | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr4:14948724-14950035 REVERSE LENGTH=180;; (*ITAG) Solyc12g009980.1.1 (e_value=5e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3123673-3130024 transcript_region:SL2.40ch12:3123673..3130024+ functional_description:"Complex interacting protein 9 (AHRD V1 ***- Q8LDX3_ARATH); contains Interpro domain(s) IPR004401 Uncharacterised protein family UPF0133 "; NbS00023173g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|408; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=4e-24) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G03870.1 (e_value=1e-84) | Symbols: | Glutaredoxin family protein | chr5:1035813-1036967 REVERSE LENGTH=384;; (*ITAG) Solyc09g009860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3350085-3351284 transcript_region:SL2.40ch09:3350085..3351284+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LWU7_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00023173g0007.1 protein AED:0.40 eAED:0.59 QI:0|0|0|0.66|0.5|0.66|3|0|87; (*ITAG) Solyc12g036610.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31776111-31776305 transcript_region:SL2.40ch12:31776111..31776305- functional_description:"Unknown Protein (AHRD V1)"; NbS00023173g0006.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|61; (*ITAG) Solyc01g065780.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:64797615-64797812 transcript_region:SL2.40ch01:64797615..64797812- functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 --*- NUOD_EHRCR)"; NbS00057289g0001.1 protein AED:0.12 eAED:0.33 QI:0|0|0|1|0|0|2|0|132 NbC24910481g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|190; (*SWP) sp|Q55467|CHLM_SYNY3 (e_value=4e-35) Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=chlM PE=3 SV=1;; (*TAIR) AT4G25080.5 (e_value=2e-64) | Symbols: CHLM | magnesium-protoporphyrin IX methyltransferase | chr4:12877015-12878128 FORWARD LENGTH=312;; (*ITAG) Solyc03g118240.2.1 (e_value=8e-113) genomic_reference:SL2.40ch03 gene_region:61214116-61216115 transcript_region:SL2.40ch03:61214116..61216115- go_terms:GO:0046406 functional_description:"Magnesium-protoporphyrin ix methyltransferase (AHRD V1 **** D7MGJ7_ARALY); contains Interpro domain(s) IPR010251 Magnesium protoporphyrin O-methyltransferase "; GO:0046406 NbS00001163g0014.1 protein AED:0.08 eAED:0.09 QI:0|0.25|0|0.8|0.25|0.2|5|0|290; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=2e-92) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.2 (e_value=1e-93) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=291;; (*ITAG) Solyc01g091700.2.1 (e_value=1e-95) genomic_reference:SL2.40ch01 gene_region:77059070-77061042 transcript_region:SL2.40ch01:77059070..77061042+ go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00001163g0010.1 protein AED:0.23 eAED:0.23 QI:456|1|1|1|0.5|0.33|9|280|238; (*SWP) sp|Q8L649|BB_ARATH (e_value=6e-32) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT3G63530.2 (e_value=5e-33) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc03g026150.2.1 (e_value=2e-147) genomic_reference:SL2.40ch03 gene_region:7939182-7943290 transcript_region:SL2.40ch03:7939182..7943290+ go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00001163g0009.1 protein AED:0.49 eAED:0.49 QI:0|0.71|0.62|1|1|1|8|891|432; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=1e-87) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT5G62090.2 (e_value=2e-122) | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816;; (*ITAG) Solyc03g026190.2.1 (e_value=5e-159) genomic_reference:SL2.40ch03 gene_region:7965135-7970790 transcript_region:SL2.40ch03:7965135..7970790- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00041739g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0|0|3|0|206; (*TAIR) AT2G16050.1 (e_value=1e-108) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:6980450-6981939 FORWARD LENGTH=243;; (*ITAG) Solyc01g109230.2.1 (e_value=5e-124) genomic_reference:SL2.40ch01 gene_region:88001317-88003173 transcript_region:SL2.40ch01:88001317..88003173+ go_terms:GO:0023034 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q6YTW3_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; GO:0023034 NbS00041739g0001.1 protein AED:0.29 eAED:0.46 QI:46|0.5|0|1|0|0|3|0|66; (*ITAG) Solyc01g109240.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:88004624-88005093 transcript_region:SL2.40ch01:88004624..88005093+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbS00038535g0003.1 protein AED:0.13 eAED:0.13 QI:782|0.75|0.6|1|0.75|0.6|5|82|565; (*SWP) sp|Q9VR91|HERC2_DROME (e_value=4e-13) Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3;; (*TAIR) AT3G23270.1 (e_value=1e-158) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr3:8316436-8320337 FORWARD LENGTH=1045;; (*ITAG) Solyc03g005590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:425861-433082 transcript_region:SL2.40ch03:425861..433082- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- Q55CR5_DICDI); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00044702g0001.1 protein AED:0.30 eAED:0.30 QI:202|0.77|0.9|1|0.88|0.8|10|316|295; (*SWP) sp|Q8GW64|PTHC_ARATH (e_value=9e-108) Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2;; (*TAIR) AT1G18440.1 (e_value=7e-109) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr1:6345994-6347686 FORWARD LENGTH=288;; (*ITAG) Solyc12g037970.1.1 (e_value=4e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:33685764-33688566 transcript_region:SL2.40ch12:33685764..33688566+ go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00005574g0016.1 protein AED:0.30 eAED:0.31 QI:0|0.85|0.75|1|0.71|0.62|8|439|199; (*SWP) sp|P41918|RANA1_TOBAC (e_value=2e-135) GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1;; (*TAIR) AT5G55190.1 (e_value=2e-134) | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:22392285-22393957 FORWARD LENGTH=221;; (*ITAG) Solyc01g104700.2.1 (e_value=3e-133) genomic_reference:SL2.40ch01 gene_region:84871561-84875061 transcript_region:SL2.40ch01:84871561..84875061- go_terms:GO:0003924 functional_description:"GTP-binding nuclear protein Ran-A1 (AHRD V1 **-- B3TM31_ELAGV); contains Interpro domain(s) IPR018210 GTP-binding nuclear protein, Ran, conserved site IPR002041 Ran GTPase "; GO:0003924 NbS00005574g0017.1 protein AED:0.31 eAED:0.37 QI:27|0.77|0.7|1|0.55|0.6|10|425|402; (*SWP) sp|O14717|TRDMT_HUMAN (e_value=6e-69) tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1;; (*TAIR) AT5G25480.1 (e_value=3e-157) | Symbols: DNMT2, AtDNMT2 | DNA methyltransferase-2 | chr5:8870069-8872199 REVERSE LENGTH=383;; (*ITAG) Solyc08g067070.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53192484-53203494 transcript_region:SL2.40ch08:53192484..53203494+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** Q177E1_AEDAE); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00005574g0019.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.66|3|7|883; (*SWP) sp|Q9SV46|PP282_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1;; (*TAIR) AT3G54980.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:20370293-20372848 FORWARD LENGTH=851;; (*ITAG) Solyc08g067060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53188616-53191168 transcript_region:SL2.40ch08:53188616..53191168- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005574g0018.1 protein AED:0.23 eAED:0.23 QI:171|1|0.85|1|0.16|0|7|188|514; (*TAIR) AT4G32440.1 (e_value=3e-67) | Symbols: | Plant Tudor-like RNA-binding protein | chr4:15657295-15658692 FORWARD LENGTH=377;; (*ITAG) Solyc05g055340.2.1 (e_value=4e-73) genomic_reference:SL2.40ch05 gene_region:64164751-64167415 transcript_region:SL2.40ch05:64164751..64167415+ functional_description:"Agenet domain-containing protein (AHRD V1 **-- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; NbS00012010g0001.1 protein AED:0.21 eAED:0.21 QI:166|1|1|1|0.25|0.2|5|875|368; (*TAIR) AT1G30280.1 (e_value=2e-23) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:10662851-10664570 REVERSE LENGTH=455; NbS00012010g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|193; (*TAIR) AT2G34620.1 (e_value=7e-75) | Symbols: | Mitochondrial transcription termination factor family protein | chr2:14577196-14578203 FORWARD LENGTH=303;; (*ITAG) Solyc02g021430.1.1 (e_value=2e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13419141-13420061 transcript_region:SL2.40ch02:13419141..13420061+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00012010g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.92|0.92|1|0.92|0.85|14|543|433; (*SWP) sp|Q93VD3|CIPKN_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 23 OS=Arabidopsis thaliana GN=CIPK23 PE=1 SV=1;; (*TAIR) AT1G30270.1 (e_value=0.0) | Symbols: CIPK23, SnRK3.23, ATCIPK23, LKS1 | CBL-interacting protein kinase 23 | chr1:10655270-10658524 FORWARD LENGTH=482;; (*ITAG) Solyc02g021440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13422223-13429172 transcript_region:SL2.40ch02:13422223..13429172- go_terms:GO:0004691 functional_description:"CBL-interacting protein kinase 04 (AHRD V1 **** A5BQ82_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00031359g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|4|0|275; (*SWP) sp|Q2V0W1|PPD_RAPSA (e_value=2e-75) Pheophorbidase OS=Raphanus sativus GN=PPD PE=1 SV=1;; (*TAIR) AT3G10870.1 (e_value=5e-115) | Symbols: MES17, ATMES17 | methyl esterase 17 | chr3:3401228-3402612 REVERSE LENGTH=276;; (*ITAG) Solyc06g048570.2.1 (e_value=3e-156) genomic_reference:SL2.40ch06 gene_region:27750020-27752571 transcript_region:SL2.40ch06:27750020..27752571- go_terms:GO:0080030,GO:0080032 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-- Q2QYJ1_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080030,GO:0080032 NbS00040559g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|193; (*ITAG) Solyc09g075660.2.1 (e_value=1e-38) genomic_reference:SL2.40ch09 gene_region:62805826-62806963 transcript_region:SL2.40ch09:62805826..62806963- functional_description:"Unknown Protein (AHRD V1)"; NbS00028442g0005.1 protein AED:0.30 eAED:0.30 QI:368|1|1|1|0.66|0.71|7|372|182; (*SWP) sp|Q3UJZ3|ARMC7_MOUSE (e_value=2e-42) Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=2 SV=2;; (*TAIR) AT5G37290.1 (e_value=2e-100) | Symbols: | ARM repeat superfamily protein | chr5:14762730-14764097 FORWARD LENGTH=180;; (*ITAG) Solyc04g071330.2.1 (e_value=1e-121) genomic_reference:SL2.40ch04 gene_region:55855012-55859981 transcript_region:SL2.40ch04:55855012..55859981+ go_terms:GO:0005488 functional_description:"Armadillo repeat-containing protein 7 (AHRD V1 **-- ARMC7_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00028442g0006.1 protein AED:0.05 eAED:0.05 QI:171|1|1|1|1|1|4|228|162; (*TAIR) AT3G03270.2 (e_value=5e-65) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159;; (*ITAG) Solyc04g014600.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:4872992-4874958 transcript_region:SL2.40ch04:4872992..4874958+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7L0F0_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00001324g0006.1 protein AED:0.00 eAED:0.00 QI:651|1|1|1|1|1|2|451|366; (*TAIR) AT2G25690.2 (e_value=2e-41) | Symbols: | Protein of unknown function (DUF581) | chr2:10940530-10941649 REVERSE LENGTH=324;; (*ITAG) Solyc08g067970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54233326-54235015 transcript_region:SL2.40ch08:54233326..54235015- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00001324g0007.1 protein AED:0.30 eAED:0.30 QI:0|0.62|0.33|0.88|0.37|0.33|9|0|301; (*SWP) sp|Q9CR50|ZN363_MOUSE (e_value=2e-27) RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1;; (*TAIR) AT5G25560.3 (e_value=1e-87) | Symbols: | CHY-type/CTCHY-type/RING-type Zinc finger protein | chr5:8899486-8901391 FORWARD LENGTH=318;; (*ITAG) Solyc08g067960.2.1 (e_value=3e-125) genomic_reference:SL2.40ch08 gene_region:54228758-54232365 transcript_region:SL2.40ch08:54228758..54232365+ go_terms:GO:0005102 functional_description:"CHY zinc finger family protein expressed (AHRD V1 ***- Q337P2_ORYSJ); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0005102 NbS00028226g0005.1 protein AED:0.15 eAED:0.15 QI:362|0.71|0.5|1|0.85|0.87|8|0|888; (*SWP) sp|Q09499|IRE1_CAEEL (e_value=1e-71) Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2;; (*TAIR) AT2G17520.1 (e_value=0.0) | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclease/protein kinase IRE1-like | chr2:7617504-7620929 FORWARD LENGTH=841;; (*ITAG) Solyc02g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40752059-40759503 transcript_region:SL2.40ch02:40752059..40759503+ go_terms:GO:0006468,GO:0006397 functional_description:"Serine threonine-protein kinase (AHRD V1 *-*- Q16QF5_AEDAE); contains Interpro domain(s) IPR010513 Ribonuclease L "; GO:0006468,GO:0006397 NbS00014556g0009.1 protein AED:0.21 eAED:0.22 QI:84|0.28|0.37|1|0.42|0.5|8|2696|276; (*SWP) sp|Q8W593|LGUC_ARATH (e_value=4e-54) Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=2 SV=1;; (*TAIR) AT1G67280.1 (e_value=3e-55) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350;; (*ITAG) Solyc08g066850.2.1 (e_value=8e-116) genomic_reference:SL2.40ch08 gene_region:52941333-52946188 transcript_region:SL2.40ch08:52941333..52946188+ go_terms:GO:0046872 functional_description:"Lactoylglutathione lyase (AHRD V1 ***- B6SSK1_MAIZE); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0046872 NbS00014556g0010.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|0.87|0.77|9|386|415; (*TAIR) AT3G22810.1 (e_value=2e-50) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr3:8068595-8071559 FORWARD LENGTH=472;; (*ITAG) Solyc08g066860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52945971-52948844 transcript_region:SL2.40ch08:52945971..52948844- go_terms:GO:0035091 functional_description:"Os02g0658033 protein (Fragment) (AHRD V1 *-*- C7IYY5_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00014556g0011.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.77|1|1|1|9|1|298; (*SWP) sp|P42158|KC1D_ARATH (e_value=7e-132) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28880.1 (e_value=2e-148) | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251351-14254048 FORWARD LENGTH=415;; (*ITAG) Solyc08g066870.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:52951824-52960178 transcript_region:SL2.40ch08:52951824..52960178- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00040728g0006.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|103|288; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=6e-74) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=4e-75) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc11g010340.1.1 (e_value=3e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3413585-3415798 transcript_region:SL2.40ch11:3413585..3415798- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q401N4_9LILI); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00020053g0006.1 protein AED:0.00 eAED:0.00 QI:314|1|0.5|1|1|1|2|0|439; (*SWP) sp|Q9C7G1|PUB45_ARATH (e_value=3e-14) U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1;; (*TAIR) AT2G27430.1 (e_value=1e-122) | Symbols: | ARM repeat superfamily protein | chr2:11729914-11733170 REVERSE LENGTH=438;; (*ITAG) Solyc02g076930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36615979-36619162 transcript_region:SL2.40ch02:36615979..36619162+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MAU3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00058318g0006.1 protein AED:0.09 eAED:0.09 QI:406|0.5|0.28|1|0.66|0.57|7|0|636; (*TAIR) AT1G12120.1 (e_value=3e-21) | Symbols: | Plant protein of unknown function (DUF863) | chr1:4114933-4116469 REVERSE LENGTH=483;; (*ITAG) Solyc08g079030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59844908-59849011 transcript_region:SL2.40ch08:59844908..59849011- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00000241g0003.1 protein AED:0.33 eAED:0.33 QI:230|1|1|1|1|1|3|376|135; (*SWP) sp|P49099|CYB5S_TOBAC (e_value=1e-92) Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=1e-77) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc09g061230.2.1 (e_value=1e-86) genomic_reference:SL2.40ch09 gene_region:53978084-53981055 transcript_region:SL2.40ch09:53978084..53981055+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** Q9ZWT2_ARATH); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00054247g0001.1 protein AED:0.00 eAED:0.00 QI:186|1|1|1|0|0|2|94|108; (*ITAG) Solyc01g091490.2.1 (e_value=9e-34) genomic_reference:SL2.40ch01 gene_region:76880854-76882051 transcript_region:SL2.40ch01:76880854..76882051- functional_description:"Unknown Protein (AHRD V1)"; NbS00025958g0007.1 protein AED:0.16 eAED:0.15 QI:0|0.2|0.16|1|0.2|0.16|6|45|480; (*TAIR) AT5G01130.1 (e_value=5e-34) | Symbols: | Protein of unknown function (DUF674) | chr5:47642-49174 FORWARD LENGTH=452;; (*ITAG) Solyc06g069820.2.1 (e_value=2e-100) genomic_reference:SL2.40ch06 gene_region:39865279-39866356 transcript_region:SL2.40ch06:39865279..39866356+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00025958g0005.1 protein AED:0.34 eAED:0.34 QI:0|0.33|0|0.75|1|1|4|0|125; (*ITAG) Solyc06g069800.1.1 (e_value=9e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39851933-39852693 transcript_region:SL2.40ch06:39851933..39852693- go_terms:GO:0009055 functional_description:"Unknown Protein (AHRD V1)"; GO:0009055 NbS00004534g0006.1 protein AED:0.19 eAED:0.20 QI:292|1|0.66|1|0.5|0.33|3|0|447; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=3e-50) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G07810.1 (e_value=1e-118) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc12g006180.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:723407-728206 transcript_region:SL2.40ch12:723407..728206+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbC26164527g0004.1 protein AED:0.17 eAED:0.18 QI:2|1|0.33|1|1|0.66|3|0|208; (*SWP) sp|Q39173|P2_ARATH (e_value=1e-123) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT5G16990.1 (e_value=8e-125) | Symbols: | Zinc-binding dehydrogenase family protein | chr5:5581831-5583849 REVERSE LENGTH=343;; (*ITAG) Solyc06g063040.1.1 (e_value=5e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36189487-36190518 transcript_region:SL2.40ch06:36189487..36190518- go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D6Y638_THEBD); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00019696g0005.1 protein AED:0.32 eAED:0.32 QI:52|0.33|0|0.5|0.33|0|4|0|203; (*TAIR) AT5G42940.1 (e_value=4e-22) | Symbols: | RING/U-box superfamily protein | chr5:17216649-17219171 REVERSE LENGTH=691;; (*ITAG) Solyc12g019190.1.1 (e_value=4e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:9495056-9496263 transcript_region:SL2.40ch12:9495056..9496263+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00035486g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.90|1|1|0.90|0.83|12|398|324; (*SWP) sp|P46276|F16P2_SOLTU (e_value=0.0) Fructose-1,6-bisphosphatase, cytosolic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G43670.1 (e_value=0.0) | Symbols: | Inositol monophosphatase family protein | chr1:16468184-16470347 FORWARD LENGTH=341;; (*ITAG) Solyc04g071340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55860635-55865238 transcript_region:SL2.40ch04:55860635..55865238+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** D3PE46_DEFDS); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0042132 NbS00013809g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0.92|1|1|1|14|0|538; (*SWP) sp|Q56XP4|NHX2_ARATH (e_value=0.0) Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2;; (*TAIR) AT3G05030.1 (e_value=0.0) | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger 2 | chr3:1393456-1396784 REVERSE LENGTH=546;; (*ITAG) Solyc01g067710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69042078-69046945 transcript_region:SL2.40ch01:69042078..69046945+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q1JRA3_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00008034g0010.1 protein AED:0.02 eAED:0.03 QI:0|0.66|0.25|0.75|0.33|0.75|4|0|481; (*TAIR) AT3G01810.2 (e_value=3e-25) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2); Has 1232 Blast hits to 443 proteins in 120 species: Archae - 2; Bacteria - 119; Metazoa - 136; Fungi - 117; Plants - 114; Viruses - 0; Other Eukaryotes - 744 (source: NCBI BLink). | chr3:289218-292375 FORWARD LENGTH=859;; (*ITAG) Solyc02g092870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48405997-48410328 transcript_region:SL2.40ch02:48405997..48410328- functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00008034g0003.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|3|0|372; (*ITAG) Solyc01g021730.2.1 (e_value=3e-45) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00008034g0006.1 protein AED:0.34 eAED:0.34 QI:258|0|0.25|0.5|0.33|0.5|4|0|114 NbS00056942g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|235; (*SWP) sp|P0CH01|AT21A_ARATH (e_value=7e-35) Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1;; (*TAIR) AT2G46495.1 (e_value=5e-36) | Symbols: | RING/U-box superfamily protein | chr2:19084134-19085704 REVERSE LENGTH=372;; (*ITAG) Solyc01g095860.2.1 (e_value=2e-100) genomic_reference:SL2.40ch01 gene_region:78763812-78765778 transcript_region:SL2.40ch01:78763812..78765778- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00056942g0002.1 protein AED:0.13 eAED:0.14 QI:0|0.85|0.62|0.87|1|1|8|0|301; (*SWP) sp|Q9M365|FB331_ARATH (e_value=4e-139) Probable F-box protein At3g61730 OS=Arabidopsis thaliana GN=RMF PE=1 SV=2;; (*TAIR) AT5G36000.1 (e_value=4e-134) | Symbols: | BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:14139996-14141892 FORWARD LENGTH=355;; (*ITAG) Solyc01g095870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78766347-78769896 transcript_region:SL2.40ch01:78766347..78769896- functional_description:"Unknown Protein (AHRD V1)"; NbS00056942g0009.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0.5|2|0|137; (*ITAG) Solyc01g095880.1.1 (e_value=7e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:78774213-78774752 transcript_region:SL2.40ch01:78774213..78774752+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At2g31720 (AHRD V1 ***- Y2172_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00019825g0007.1 protein AED:0.50 eAED:0.51 QI:0|0|0|0.75|1|1|4|0|141; (*SWP) sp|Q8W3Z2|LUPS_BETPL (e_value=1e-53) Lupeol synthase OS=Betula platyphylla GN=OSCBPW PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=5e-42) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc07g042630.2.1 (e_value=1e-62) genomic_reference:SL2.40ch07 gene_region:53421832-53432164 transcript_region:SL2.40ch07:53421832..53432164- go_terms:GO:0042300 functional_description:"Beta-Amyrin Synthase (AHRD V1 **** O82146_PANGI); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0042300 NbS00019825g0010.1 protein AED:0.50 eAED:0.51 QI:0|0|0|0.71|0.5|0.42|7|0|208; (*SWP) sp|Q764T8|LUPS_GLYGL (e_value=1e-80) Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1;; (*TAIR) AT1G78960.1 (e_value=5e-70) | Symbols: ATLUP2, LUP2 | lupeol synthase 2 | chr1:29696722-29701024 FORWARD LENGTH=763;; (*ITAG) Solyc07g042630.2.1 (e_value=2e-104) genomic_reference:SL2.40ch07 gene_region:53421832-53432164 transcript_region:SL2.40ch07:53421832..53432164- go_terms:GO:0042300 functional_description:"Beta-Amyrin Synthase (AHRD V1 **** O82146_PANGI); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0042300 NbS00019825g0006.1 protein AED:0.10 eAED:0.10 QI:221|0.66|0.71|0.85|0.83|0.71|7|471|126; (*SWP) sp|Q3SZE2|PFD1_BOVIN (e_value=2e-16) Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1;; (*TAIR) AT2G07340.1 (e_value=2e-68) | Symbols: PFD1 | PREFOLDIN 1 | chr2:3045644-3046606 FORWARD LENGTH=128;; (*ITAG) Solyc07g042620.2.1 (e_value=1e-82) genomic_reference:SL2.40ch07 gene_region:53412441-53421827 transcript_region:SL2.40ch07:53412441..53421827+ go_terms:GO:0005515,GO:0003700 functional_description:"Prefoldin subunit 1 (AHRD V1 ***- B6SIP7_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0005515,GO:0003700 NbS00019825g0009.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|0|0|3|0|101; (*SWP) sp|Q8W3Z2|LUPS_BETPL (e_value=1e-36) Lupeol synthase OS=Betula platyphylla GN=OSCBPW PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=5e-26) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc07g042630.2.1 (e_value=6e-37) genomic_reference:SL2.40ch07 gene_region:53421832-53432164 transcript_region:SL2.40ch07:53421832..53432164- go_terms:GO:0042300 functional_description:"Beta-Amyrin Synthase (AHRD V1 **** O82146_PANGI); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0042300 NbS00019825g0008.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|72; (*SWP) sp|P38605|CAS1_ARATH (e_value=1e-17) Cycloartenol synthase OS=Arabidopsis thaliana GN=CAS1 PE=1 SV=2;; (*TAIR) AT2G07050.1 (e_value=8e-19) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc07g042630.2.1 (e_value=8e-21) genomic_reference:SL2.40ch07 gene_region:53421832-53432164 transcript_region:SL2.40ch07:53421832..53432164- go_terms:GO:0042300 functional_description:"Beta-Amyrin Synthase (AHRD V1 **** O82146_PANGI); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0042300 NbS00025942g0005.1 protein AED:0.15 eAED:0.15 QI:606|1|1|1|0.6|0.33|6|0|727; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=3e-148) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=2e-149) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc01g007070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1602912-1606381 transcript_region:SL2.40ch01:1602912..1606381- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00025942g0006.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|127 NbS00030001g0002.1 protein AED:0.34 eAED:0.38 QI:0|0|0.5|1|0|0.5|2|434|76 NbS00006318g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|125; (*SWP) sp|P53681|CRK_DAUCA (e_value=1e-45) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT3G50530.1 (e_value=4e-45) | Symbols: CRK | CDPK-related kinase | chr3:18753833-18756487 FORWARD LENGTH=601;; (*ITAG) Solyc02g090510.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:46628868-46634108 transcript_region:SL2.40ch02:46628868..46634108+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 **** Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00037791g0004.1 protein AED:0.33 eAED:0.35 QI:234|0.77|0.8|1|0.77|0.7|10|0|347; (*SWP) sp|Q67YS6|ALIS2_ARATH (e_value=3e-152) Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1;; (*TAIR) AT5G46150.1 (e_value=2e-153) | Symbols: | LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein | chr5:18708735-18710424 REVERSE LENGTH=343;; (*ITAG) Solyc08g023460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:16760675-16774732 transcript_region:SL2.40ch08:16760675..16774732+ go_terms:GO:0005515,GO:0004970 functional_description:"Cell cycle control protein (AHRD V1 **-- Q2UBE9_ASPOR); contains Interpro domain(s) IPR005045 Protein of unknown function DUF284, transmembrane eukaryotic "; GO:0005515,GO:0004970 NbS00024632g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|4|0|171; (*SWP) sp|P42795|RL111_ARATH (e_value=5e-110) 60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2;; (*TAIR) AT2G42740.1 (e_value=4e-111) | Symbols: RPL16A | ribosomal protein large subunit 16A | chr2:17791794-17792946 FORWARD LENGTH=182;; (*ITAG) Solyc12g010930.1.1 (e_value=5e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3818534-3820142 transcript_region:SL2.40ch12:3818534..3820142+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L5 (AHRD V1 ***- RL5_XANP2); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00024632g0014.1 protein AED:0.12 eAED:0.17 QI:41|0.5|0|1|0.5|0.33|3|0|186; (*SWP) sp|O65399|E131_ARATH (e_value=7e-16) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT2G30933.1 (e_value=3e-33) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr2:13164179-13166517 REVERSE LENGTH=227;; (*ITAG) Solyc07g056310.2.1 (e_value=4e-60) genomic_reference:SL2.40ch07 gene_region:61480093-61482416 transcript_region:SL2.40ch07:61480093..61482416+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00024632g0013.1 protein AED:0.48 eAED:0.50 QI:0|0|0|0.4|0.25|0.4|5|0|258; (*SWP) sp|Q6EU49|WNK4_ORYSJ (e_value=9e-23) Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1;; (*TAIR) AT5G41990.1 (e_value=1e-22) | Symbols: WNK8, ATWNK8 | with no lysine (K) kinase 8 | chr5:16795085-16797562 REVERSE LENGTH=563;; (*ITAG) Solyc10g009060.1.1 (e_value=7e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00036186g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.8|0.54|0.90|0.7|0.63|11|0|572; (*SWP) sp|C1K5M3|PHS1_SOLLC (e_value=0.0) Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic OS=Solanum lycopersicum GN=PHS1 PE=1 SV=1;; (*TAIR) AT1G79460.1 (e_value=3e-124) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785;; (*ITAG) Solyc08g005640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:504959-510287 transcript_region:SL2.40ch08:504959..510287+ go_terms:GO:0009899 functional_description:"Ent-kaurene synthase-like protein 1 (AHRD V1 **** Q673F9_HORVD); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0009899 NbS00025995g0002.1 protein AED:0.12 eAED:0.12 QI:1089|1|1|1|0.5|0.33|3|313|678; (*SWP) sp|Q84MA9|Y1063_ARATH (e_value=0.0) Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana GN=At1g60630 PE=2 SV=1;; (*TAIR) AT1G10850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:3612228-3614343 FORWARD LENGTH=663;; (*ITAG) Solyc04g008650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2280193-2286296 transcript_region:SL2.40ch04:2280193..2286296+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00052914g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.25|1|0.33|0.25|4|0|324; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=8e-84) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT5G38020.1 (e_value=2e-61) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:15165953-15167612 REVERSE LENGTH=368;; (*ITAG) Solyc04g055260.2.1 (e_value=3e-115) genomic_reference:SL2.40ch04 gene_region:53045857-53049019 transcript_region:SL2.40ch04:53045857..53049019- go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase (AHRD V1 **** Q70T29_BIXOR); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00054339g0001.1 protein AED:0.06 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|469; (*TAIR) AT3G50340.1 (e_value=8e-155) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 128 Blast hits to 128 proteins in 39 species: Archae - 0; Bacteria - 46; Metazoa - 0; Fungi - 3; Plants - 76; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18665333-18666544 REVERSE LENGTH=403;; (*ITAG) Solyc02g090870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46935792-46937000 transcript_region:SL2.40ch02:46935792..46937000+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005372g0007.1 protein AED:0.74 eAED:0.78 QI:25|0.2|0|0.5|0.2|0.5|6|0|91 NbS00006294g0017.1 protein AED:0.24 eAED:0.24 QI:354|0.83|0.69|1|0.75|0.84|13|0|913; (*SWP) sp|Q2HXL0|RBOHC_SOLTU (e_value=0.0) Respiratory burst oxidase homolog protein C OS=Solanum tuberosum GN=RBOHC PE=1 SV=2;; (*TAIR) AT5G47910.1 (e_value=0.0) | Symbols: RBOHD, ATRBOHD | respiratory burst oxidase homologue D | chr5:19397585-19401768 FORWARD LENGTH=921;; (*ITAG) Solyc03g117980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61025937-61031702 transcript_region:SL2.40ch03:61025937..61031702+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00006294g0014.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0.4|1|1|1|5|0|462; (*SWP) sp|Q38732|DAG_ANTMA (e_value=3e-44) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT1G11430.1 (e_value=1e-44) | Symbols: | plastid developmental protein DAG, putative | chr1:3847273-3848938 FORWARD LENGTH=232;; (*ITAG) Solyc02g079210.2.1 (e_value=3e-120) genomic_reference:SL2.40ch02 gene_region:38397630-38401238 transcript_region:SL2.40ch02:38397630..38401238- functional_description:"DAG protein (AHRD V1 *-*- B6SJX7_MAIZE)"; NbS00006294g0019.1 protein AED:0.16 eAED:0.16 QI:109|1|1|1|0.36|0.66|12|382|647; (*TAIR) AT5G07380.2 (e_value=0.0) | Symbols: | unknown protein; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2335736 FORWARD LENGTH=641;; (*ITAG) Solyc03g117990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61033942-61039749 transcript_region:SL2.40ch03:61033942..61039749- functional_description:"Unknown Protein (AHRD V1)"; NbS00006294g0020.1 protein AED:0.21 eAED:0.21 QI:246|1|1|1|0.5|0.66|3|361|304; (*SWP) sp|Q9FLT2|IPMKB_ARATH (e_value=4e-133) Inositol polyphosphate multikinase beta OS=Arabidopsis thaliana GN=IPK2b PE=1 SV=1;; (*TAIR) AT5G61760.1 (e_value=3e-134) | Symbols: ATIPK2BETA, IPK2B, IPK2BETA | inositol polyphosphate kinase 2 beta | chr5:24813916-24814818 REVERSE LENGTH=300;; (*ITAG) Solyc03g118000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61040553-61041437 transcript_region:SL2.40ch03:61040553..61041437- go_terms:GO:0008440,GO:0000823 functional_description:"Inositol hexakisphosphate kinase 3 (AHRD V1 **** Q5TAQ4_HUMAN); contains Interpro domain(s) IPR005522 Inositol polyphosphate kinase "; GO:0008440,GO:0000823 NbS00031715g0004.1 protein AED:0.09 eAED:0.09 QI:224|1|1|1|0.92|0.92|14|287|713; (*SWP) sp|Q94CD5|ATG7_ARATH (e_value=0.0) Ubiquitin-like modifier-activating enzyme atg7 OS=Arabidopsis thaliana GN=ATG7 PE=1 SV=1;; (*TAIR) AT5G45900.1 (e_value=0.0) | Symbols: APG7, ATAPG7, ATG7, ATATG7 | ThiF family protein | chr5:18615304-18618436 FORWARD LENGTH=697;; (*ITAG) Solyc11g068930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50569988-50574775 transcript_region:SL2.40ch11:50569988..50574775- go_terms:GO:0008152,GO:0005737,GO:0003824 functional_description:"Autophagy-related 7 (AHRD V1 ***- B8XVQ4_MAIZE); contains Interpro domain(s) IPR006285 E1-like protein-activating enzyme Gsa7p/Apg7p "; GO:0008152,GO:0005737,GO:0003824 NbS00039620g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|146|87 NbS00031189g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|150; (*SWP) sp|P46293|RS16_GOSHI (e_value=1e-93) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=4e-93) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc04g026100.1.1 (e_value=3e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:24590324-24590767 transcript_region:SL2.40ch04:24590324..24590767+ go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00031189g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.5|0.5|1|0.75|4|270|98; (*SWP) sp|P49689|RS30_ARATH (e_value=4e-26) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=3e-27) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=8e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00046475g0002.1 protein AED:0.29 eAED:0.29 QI:203|0.9|0.90|1|0.9|0.81|11|0|308; (*SWP) sp|Q91XL3|UXS1_MOUSE (e_value=8e-115) UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1;; (*TAIR) AT2G28760.3 (e_value=0.0) | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336469-12338642 REVERSE LENGTH=343;; (*ITAG) Solyc04g011400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3868800-3872796 transcript_region:SL2.40ch04:3868800..3872796- go_terms:GO:0048040 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **-* D5RML8_9PROT); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0048040 NbS00046475g0009.1 protein AED:0.24 eAED:0.30 QI:0|0.83|0.57|1|0.83|0.71|7|0|504; (*TAIR) AT3G46450.1 (e_value=6e-109) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:17093297-17095319 REVERSE LENGTH=486;; (*ITAG) Solyc05g054570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63605270-63611096 transcript_region:SL2.40ch05:63605270..63611096+ go_terms:GO:0005215 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q84TA5_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00024099g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|151; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=1e-78) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=1e-79) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00035149g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|4|0|275; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=3e-116) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT1G71691.2 (e_value=2e-117) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:26949395-26951480 REVERSE LENGTH=384;; (*ITAG) Solyc11g032050.1.1 (e_value=7e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:20989195-20993340 transcript_region:SL2.40ch11:20989195..20993340+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00008747g0012.1 protein AED:0.18 eAED:0.19 QI:1195|0.5|0.55|0.88|0.37|0.55|9|411|230; (*TAIR) AT5G51510.1 (e_value=5e-33) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20921512-20922818 FORWARD LENGTH=170;; (*ITAG) Solyc11g006880.1.1 (e_value=8e-69) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1417654-1420489 transcript_region:SL2.40ch11:1417654..1420489- functional_description:"Genomic DNA chromosome 5 TAC clone K17N15 (AHRD V1 **-- Q9FHN3_ARATH); contains Interpro domain(s) IPR009787 Protein of unknown function DUF1352 "; NbS00008747g0007.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|73; (*SWP) sp|P52855|RLA1_MAIZE (e_value=2e-27) 60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1;; (*TAIR) AT5G24510.1 (e_value=7e-32) | Symbols: | 60S acidic ribosomal protein family | chr5:8369295-8369866 REVERSE LENGTH=111;; (*ITAG) Solyc07g049420.1.1 (e_value=3e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57012166-57012763 transcript_region:SL2.40ch07:57012166..57012763+ go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein P1 (AHRD V1 ***- Q9FLV1_ARATH); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00008747g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.33|1|1|3|0|113; (*ITAG) Solyc06g009920.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:4341939-4342262 transcript_region:SL2.40ch06:4341939..4342262+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016524g0006.1 protein AED:0.23 eAED:0.24 QI:366|0.55|0.6|1|0.55|0.4|10|0|575; (*SWP) sp|Q8VXB1|HAK12_ORYSJ (e_value=7e-158) Putative potassium transporter 12 OS=Oryza sativa subsp. japonica GN=HAK12 PE=2 SV=1;; (*TAIR) AT2G35060.1 (e_value=1e-157) | Symbols: KUP11 | K+ uptake permease 11 | chr2:14775184-14778184 REVERSE LENGTH=792;; (*ITAG) Solyc02g031840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:17778515-17790343 transcript_region:SL2.40ch02:17778515..17790343+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** A9SMZ3_PHYPA); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00016524g0008.1 protein AED:0.31 eAED:0.54 QI:0|0|0|1|0.5|1|3|0|86 NbC24557587g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|142; (*SWP) sp|Q9SVV2|XTH26_ARATH (e_value=1e-57) Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1;; (*TAIR) AT4G28850.1 (e_value=8e-59) | Symbols: XTH26, ATXTH26 | xyloglucan endotransglucosylase/hydrolase 26 | chr4:14244336-14245781 FORWARD LENGTH=292;; (*ITAG) Solyc12g007260.1.1 (e_value=2e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1680869-1682934 transcript_region:SL2.40ch12:1680869..1682934+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00002504g0003.1 protein AED:0.30 eAED:0.30 QI:126|0.75|0.4|1|0.75|0.8|5|62|113; (*SWP) sp|O49884|RL30_LUPLU (e_value=1e-72) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=2e-68) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc11g071490.1.1 (e_value=5e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52029448-52031919 transcript_region:SL2.40ch11:52029448..52031919+ go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00005572g0110.1 protein AED:0.20 eAED:0.20 QI:526|1|0.66|1|1|1|3|0|346 NbS00023511g0018.1 protein AED:0.18 eAED:0.18 QI:60|1|0.87|1|0.85|0.87|8|958|643; (*SWP) sp|Q9H9A7|RMI1_HUMAN (e_value=3e-15) RecQ-mediated genome instability protein 1 OS=Homo sapiens GN=RMI1 PE=1 SV=3;; (*TAIR) AT5G63540.2 (e_value=2e-143) | Symbols: ATRMI1, BLAP75, RMI1 | Domain of unknown function (DUF1767) | chr5:25441033-25444373 REVERSE LENGTH=677;; (*ITAG) Solyc12g005900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:530826-536159 transcript_region:SL2.40ch12:530826..536159- functional_description:"RecQ-mediated genome instability protein 1 (AHRD V1 **-- RMI1_XENLA); contains Interpro domain(s) IPR013894 Region of unknown function DUF1767 "; NbS00023511g0003.1 protein AED:0.40 eAED:0.40 QI:0|0.66|0.5|1|1|1|4|0|323; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=5e-63) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT2G32460.1 (e_value=8e-66) | Symbols: MYB101, ATMYB101, ATM1 | myb domain protein 101 | chr2:13782419-13784363 REVERSE LENGTH=490;; (*ITAG) Solyc07g052300.2.1 (e_value=4e-74) genomic_reference:SL2.40ch07 gene_region:58120635-58123894 transcript_region:SL2.40ch07:58120635..58123894+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00023511g0028.1 protein AED:0.17 eAED:0.17 QI:841|0.90|0.91|1|0.18|0.25|12|488|394; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=407;; (*ITAG) Solyc12g005880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:514570-517761 transcript_region:SL2.40ch12:514570..517761+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00023511g0023.1 protein AED:0.18 eAED:0.18 QI:119|1|0.75|1|0.85|1|8|0|300; (*SWP) sp|P42744|ULA1_ARATH (e_value=5e-174) NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1;; (*TAIR) AT1G05180.1 (e_value=4e-175) | Symbols: AXR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:1498357-1501775 REVERSE LENGTH=540;; (*ITAG) Solyc11g072460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52713558-52727401 transcript_region:SL2.40ch11:52713558..52727401+ go_terms:GO:0008152,GO:0003824 functional_description:"Nedd8 activating enzyme E1 subunit 1 (AHRD V1 ***- B5DFY9_SALSA); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0008152,GO:0003824 NbS00023511g0026.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|219; (*TAIR) AT5G42570.1 (e_value=2e-76) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc12g005910.1.1 (e_value=7e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:541920-546745 transcript_region:SL2.40ch12:541920..546745+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00023511g0029.1 protein AED:0.37 eAED:0.37 QI:103|1|0.83|1|1|1|6|0|191; (*SWP) sp|P42744|ULA1_ARATH (e_value=1e-93) NEDD8-activating enzyme E1 regulatory subunit OS=Arabidopsis thaliana GN=AXR1 PE=1 SV=1;; (*TAIR) AT1G05180.3 (e_value=4e-96) | Symbols: AXR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:1498524-1501469 REVERSE LENGTH=422;; (*ITAG) Solyc11g072460.1.1 (e_value=9e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52713558-52727401 transcript_region:SL2.40ch11:52713558..52727401+ go_terms:GO:0008152,GO:0003824 functional_description:"Nedd8 activating enzyme E1 subunit 1 (AHRD V1 ***- B5DFY9_SALSA); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0008152,GO:0003824 NbS00023511g0027.1 protein AED:0.44 eAED:0.47 QI:0|0|0|0.66|0.5|0.66|3|0|122; (*SWP) sp|Q6WAU0|PULR_MENPI (e_value=1e-17) (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1;; (*TAIR) AT5G16970.1 (e_value=7e-17) | Symbols: AT-AER, AER | alkenal reductase | chr5:5576291-5578001 REVERSE LENGTH=345;; (*ITAG) Solyc07g045090.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:55529949-55531720 transcript_region:SL2.40ch07:55529949..55531720+ go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D2QM87_SPILD); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00036748g0003.1 protein AED:0.23 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|161; (*SWP) sp|Q0JIL1|NRX2_ORYSJ (e_value=1e-28) Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1;; (*TAIR) AT1G60420.1 (e_value=2e-22) | Symbols: | DC1 domain-containing protein | chr1:22261978-22264243 FORWARD LENGTH=578;; (*ITAG) Solyc04g081900.2.1 (e_value=1e-61) genomic_reference:SL2.40ch04 gene_region:63357264-63360186 transcript_region:SL2.40ch04:63357264..63360186+ go_terms:GO:0045454 functional_description:"Nucleoredoxin 1 (AHRD V1 **-- A8I9L1_CHLRE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00008339g0013.1 protein AED:0.05 eAED:0.05 QI:252|1|1|1|1|1|11|328|596; (*SWP) sp|Q9FJX0|PPIL2_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1;; (*TAIR) AT5G67530.1 (e_value=0.0) | Symbols: ATPUB49, PUB49 | plant U-box 49 | chr5:26941260-26943878 FORWARD LENGTH=595;; (*ITAG) Solyc02g092380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48041305-48046787 transcript_region:SL2.40ch02:48041305..48046787- go_terms:GO:0005515,GO:0004842 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C0SDY7_PARBP); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005515,GO:0004842 NbS00008339g0006.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|373; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=4e-139) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=3e-140) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc02g092370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48034737-48036260 transcript_region:SL2.40ch02:48034737..48036260- go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9NAS9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00008339g0015.1 protein AED:0.18 eAED:0.23 QI:0|0.85|0.75|1|0.57|0.62|8|513|276; (*SWP) sp|O49204|KAPS_CATRO (e_value=3e-138) Adenylyl-sulfate kinase, chloroplastic OS=Catharanthus roseus GN=AKN PE=2 SV=1;; (*TAIR) AT2G14750.1 (e_value=4e-116) | Symbols: APK, AKN1, ATAKN1, APK1 | APS kinase | chr2:6314128-6315501 FORWARD LENGTH=276;; (*ITAG) Solyc02g064650.2.1 (e_value=1e-157) genomic_reference:SL2.40ch02 gene_region:30310743-30315618 transcript_region:SL2.40ch02:30310743..30315618- go_terms:GO:0004020 functional_description:"Adenylyl-sulfate kinase (AHRD V1 **** C6TL96_SOYBN); contains Interpro domain(s) IPR002891 Adenylylsulphate kinase, C-terminal "; GO:0004020 NbS00008339g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|213; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=5e-97) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=4e-98) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc02g092370.1.1 (e_value=4e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48034737-48036260 transcript_region:SL2.40ch02:48034737..48036260- go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9NAS9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00008339g0004.1 protein AED:0.15 eAED:0.15 QI:119|1|1|1|1|1|4|720|216; (*TAIR) AT3G49890.1 (e_value=3e-40) | Symbols: | unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:18499296-18500501 FORWARD LENGTH=220;; (*ITAG) Solyc02g092390.2.1 (e_value=2e-80) genomic_reference:SL2.40ch02 gene_region:48048053-48050432 transcript_region:SL2.40ch02:48048053..48050432+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008339g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|192; (*ITAG) Solyc02g092400.1.1 (e_value=6e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:48050886-48051464 transcript_region:SL2.40ch02:48050886..48051464+ go_terms:GO:0006468 functional_description:"Harpin-induced protein (AHRD V1 ***- B6TNZ1_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; GO:0006468 NbS00042070g0014.1 protein AED:0.15 eAED:0.19 QI:60|0.87|0.55|1|0.62|0.55|9|0|603; (*TAIR) AT4G32160.1 (e_value=3e-176) | Symbols: | Phox (PX) domain-containing protein | chr4:15529056-15532892 FORWARD LENGTH=723;; (*ITAG) Solyc08g042130.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:29154836-29172044 transcript_region:SL2.40ch08:29154836..29172044- go_terms:GO:0035091 functional_description:"Phox domain-containing protein (AHRD V1 *-*- D7L4Y9_ARALY); contains Interpro domain(s) IPR001683 Phox-like "; GO:0035091 NbS00042070g0012.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.83|0.2|0.16|6|0|630; (*SWP) sp|A8MQA3|PP330_ARATH (e_value=2e-168) Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2;; (*TAIR) AT4G21065.1 (e_value=2e-169) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11245976-11247763 FORWARD LENGTH=595;; (*ITAG) Solyc08g023640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:17717249-17719006 transcript_region:SL2.40ch08:17717249..17719006+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00042070g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|84; (*ITAG) Solyc01g087740.1.1 (e_value=5e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00042070g0015.1 protein AED:0.64 eAED:0.64 QI:0|0|0|1|1|1|2|0|112; (*ITAG) Solyc08g042120.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:29151830-29152018 transcript_region:SL2.40ch08:29151830..29152018- functional_description:"Unknown Protein (AHRD V1)"; NbS00017651g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.93|1|1|1|16|550|656; (*SWP) sp|Q9I7W5|SAS10_DROME (e_value=1e-13) Something about silencing protein 10 OS=Drosophila melanogaster GN=Sas10 PE=1 SV=2;; (*TAIR) AT2G43650.1 (e_value=1e-121) | Symbols: EMB2777 | Sas10/U3 ribonucleoprotein (Utp) family protein | chr2:18099430-18103147 FORWARD LENGTH=654;; (*ITAG) Solyc11g072320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52600318-52611793 transcript_region:SL2.40ch11:52600318..52611793+ go_terms:GO:0005634 functional_description:"Something about silencing protein 10 (AHRD V1 *--- B3LH41_YEAS1); contains Interpro domain(s) IPR018972 Something about silencing protein 10 (Sas10), C-terminal "; GO:0005634 NbS00028162g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.2|0|6|0|509; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=1e-24) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=9e-26) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc01g108240.2.1 (e_value=4e-51) genomic_reference:SL2.40ch01 gene_region:87368287-87369574 transcript_region:SL2.40ch01:87368287..87369574+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00005802g0009.1 protein AED:0.00 eAED:0.00 QI:216|1|1|1|0.8|0.66|6|198|362; (*ITAG) Solyc06g069820.2.1 (e_value=5e-23) genomic_reference:SL2.40ch06 gene_region:39865279-39866356 transcript_region:SL2.40ch06:39865279..39866356+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00005802g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|2|0|282; (*ITAG) Solyc09g010410.2.1 (e_value=2e-130) genomic_reference:SL2.40ch09 gene_region:3784428-3786624 transcript_region:SL2.40ch09:3784428..3786624+ functional_description:"BRI1-KD interacting protein 130 (AHRD V1 ***- Q761Y4_ORYSJ)"; NbS00005802g0007.1 protein AED:0.18 eAED:0.18 QI:234|0.87|0.94|1|0.87|0.82|17|319|413; (*SWP) sp|Q9ZUR7|ARGJ_ARATH (e_value=0.0) Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Arabidopsis thaliana GN=At2g37500 PE=1 SV=2;; (*TAIR) AT2G37500.1 (e_value=0.0) | Symbols: | arginine biosynthesis protein ArgJ family | chr2:15739904-15742689 REVERSE LENGTH=468;; (*ITAG) Solyc09g010420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3786597-3795092 transcript_region:SL2.40ch09:3786597..3795092- go_terms:GO:0004042,GO:0004358 functional_description:"Arginine biosynthesis bifunctional protein ArgJ (AHRD V1 ***- B4VHU0_9CYAN); contains Interpro domain(s) IPR002813 Arginine biosynthesis protein ArgJ "; GO:0004042,GO:0004358 NbS00005802g0115.1 protein AED:0.02 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.33|3|386|769 NbS00005802g0112.1 protein AED:0.15 eAED:0.15 QI:0|0.92|0.85|1|1|1|14|449|991 NbS00005802g0117.1 protein AED:0.16 eAED:0.17 QI:163|0.66|0.5|1|0.66|0.5|4|0|547 NbS00005802g0104.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|73 NbS00005802g0111.1 protein AED:0.42 eAED:0.42 QI:9|0|0.33|0.66|0.5|0.33|3|547|101 NbS00005802g0118.1 protein AED:0.61 eAED:0.61 QI:0|0.33|0|0.75|0.33|0.75|4|0|66 NbS00009039g0006.1 protein AED:0.17 eAED:0.18 QI:0|0.4|0.5|1|0.6|0.33|6|245|1121; (*SWP) sp|Q10233|RPC2_SCHPO (e_value=0.0) DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1;; (*TAIR) AT5G45140.1 (e_value=0.0) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00009039g0005.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|75 NbS00000565g0019.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.75|1|0.66|0.75|4|285|409; (*SWP) sp|A8K979|ERI2_HUMAN (e_value=5e-43) ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2;; (*TAIR) AT3G15140.1 (e_value=6e-20) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337;; (*ITAG) Solyc01g096570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79404952-79411886 transcript_region:SL2.40ch01:79404952..79411886+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease family protein expressed (AHRD V1 **-- Q2R3D7_ORYSJ); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00000565g0018.1 protein AED:0.36 eAED:0.37 QI:0|0.25|0.2|0.8|0.25|0.4|5|0|273; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=3e-22) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT1G20150.1 (e_value=3e-27) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr1:6987332-6990361 REVERSE LENGTH=780;; (*ITAG) Solyc01g096560.1.1 (e_value=9e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79398896-79403053 transcript_region:SL2.40ch01:79398896..79403053+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00000565g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|140; (*SWP) sp|P31674|RS15_ORYSJ (e_value=9e-75) 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2;; (*TAIR) AT5G09500.1 (e_value=1e-73) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc02g082000.2.1 (e_value=1e-77) genomic_reference:SL2.40ch02 gene_region:40322179-40324715 transcript_region:SL2.40ch02:40322179..40324715- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_BRAHW); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00000565g0021.1 protein AED:0.30 eAED:0.33 QI:204|0.83|0.94|1|0.77|0.84|19|0|515; (*SWP) sp|Q8R3N6|THOC1_MOUSE (e_value=1e-53) THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1;; (*TAIR) AT5G09860.1 (e_value=0.0) | Symbols: AtTHO1, THO1, AtHPR1, HPR1 | nuclear matrix protein-related | chr5:3066815-3070733 FORWARD LENGTH=599;; (*ITAG) Solyc01g096600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79421544-79440342 transcript_region:SL2.40ch01:79421544..79440342- go_terms:GO:0003711,GO:0005515 functional_description:"THO complex subunit 1 (AHRD V1 **-- B0WA57_CULQU)"; GO:0003711,GO:0005515 NbS00000565g0002.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|1|1|2|0|92; (*SWP) sp|P49200|RS201_ARATH (e_value=5e-58) 40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2;; (*TAIR) AT5G62300.2 (e_value=4e-59) | Symbols: | Ribosomal protein S10p/S20e family protein | chr5:25021388-25022235 REVERSE LENGTH=124;; (*ITAG) Solyc01g096590.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:79418198-79420477 transcript_region:SL2.40ch01:79418198..79420477- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10 (AHRD V1 ***- RS10_CAMFF); contains Interpro domain(s) IPR005729 Ribosomal protein S10, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00000565g0022.1 protein AED:0.17 eAED:1.00 QI:28|0|0|1|0|0|2|122|28 NbS00013304g0004.1 protein AED:0.08 eAED:0.08 QI:176|1|1|1|0|0.25|4|1011|89; (*TAIR) AT1G48140.1 (e_value=3e-43) | Symbols: | dolichol-phosphate mannosyltransferase-related | chr1:17783402-17783914 FORWARD LENGTH=89;; (*ITAG) Solyc01g005110.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:102188-103191 transcript_region:SL2.40ch01:102188..103191+ functional_description:"cDNA clone J065210E11 full insert sequence (AHRD V1 **-- B7F922_ORYSJ); contains Interpro domain(s) IPR013174 Dolichol-phosphate mannosyltransferase subunit 3 "; NbS00013304g0005.1 protein AED:0.36 eAED:0.36 QI:0|0.57|0.5|0.87|0|0.12|8|451|246; (*TAIR) AT1G68080.1 (e_value=9e-63) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:25517530-25519240 FORWARD LENGTH=389;; (*ITAG) Solyc01g005100.2.1 (e_value=7e-87) genomic_reference:SL2.40ch01 gene_region:91809-97289 transcript_region:SL2.40ch01:91809..97289- go_terms:GO:0055114 functional_description:"Prolyl 3-hydroxylase 1 (AHRD V1 *--- P3H1_CHICK); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0055114 NbS00013304g0103.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|430 NbS00022417g0010.1 protein AED:0.15 eAED:0.15 QI:623|1|1|1|0.33|0.5|4|101|169; (*TAIR) AT3G24820.1 (e_value=4e-42) | Symbols: | BSD domain-containing protein | chr3:9062717-9064366 REVERSE LENGTH=186;; (*ITAG) Solyc09g061270.2.1 (e_value=1e-83) genomic_reference:SL2.40ch09 gene_region:54105916-54108863 transcript_region:SL2.40ch09:54105916..54108863+ functional_description:"BSD domain-containing protein (AHRD V1 ***- D7L5T3_ARALY); contains Interpro domain(s) IPR005607 BSD "; NbS00022417g0008.1 protein AED:0.09 eAED:0.29 QI:412|0.5|0.8|1|0.25|0.4|5|75|143 NbS00035214g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|380; (*TAIR) AT5G11730.1 (e_value=3e-167) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc08g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51408881-51413600 transcript_region:SL2.40ch08:51408881..51413600- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00014806g0006.1 protein AED:0.08 eAED:0.12 QI:54|0|0|1|0|0|4|0|501; (*TAIR) AT3G05390.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc01g099330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81375622-81379067 transcript_region:SL2.40ch01:81375622..81379067+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 *-*- Q0IVC7_ORYSJ)"; NbS00001662g0003.1 protein AED:0.05 eAED:0.05 QI:187|0.66|1|1|0.66|0.75|4|337|419; (*TAIR) AT1G61740.1 (e_value=8e-129) | Symbols: | Sulfite exporter TauE/SafE family protein | chr1:22798365-22801020 REVERSE LENGTH=458;; (*ITAG) Solyc03g031530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8312495-8317154 transcript_region:SL2.40ch03:8312495..8317154- go_terms:GO:0005515 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0005515 NbS00009737g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|467; (*SWP) sp|O23090|BH014_ARATH (e_value=1e-69) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=1e-70) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc01g096370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79210978-79212857 transcript_region:SL2.40ch01:79210978..79212857+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00008317g0011.1 protein AED:0.10 eAED:0.10 QI:177|0.53|0.5|0.92|0.69|0.64|14|0|1069; (*TAIR) AT3G21290.1 (e_value=1e-50) | Symbols: | dentin sialophosphoprotein-related | chr3:7482318-7488676 FORWARD LENGTH=1192;; (*ITAG) Solyc03g121380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63534991-63545390 transcript_region:SL2.40ch03:63534991..63545390- functional_description:"Genomic DNA chromosome 3 P1 clone MXL8 (AHRD V1 *-*- Q9LU30_ARATH); contains Interpro domain(s) IPR010844 Occludin and RNA polymerase II elongation factor ELL domain "; NbS00008317g0012.1 protein AED:0.24 eAED:0.24 QI:193|1|1|1|1|1|3|342|129; (*SWP) sp|O82205|R15A2_ARATH (e_value=1e-72) 40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1;; (*TAIR) AT2G19720.1 (e_value=1e-73) | Symbols: rps15ab | ribosomal protein S15A B | chr2:8510223-8511258 REVERSE LENGTH=129;; (*ITAG) Solyc03g121370.2.1 (e_value=1e-90) genomic_reference:SL2.40ch03 gene_region:63530082-63534056 transcript_region:SL2.40ch03:63530082..63534056- go_terms:GO:0003735,GO:0032403 functional_description:"30S ribosomal protein S8 (AHRD V1 ***- Q1HRQ6_AEDAE); contains Interpro domain(s) IPR000630 Ribosomal protein S8 "; GO:0003735,GO:0032403 NbS00008317g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|203; (*SWP) sp|O96552|CHMP1_DICDI (e_value=5e-54) Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1;; (*TAIR) AT1G17730.1 (e_value=2e-121) | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting 46.1 | chr1:6099210-6100153 FORWARD LENGTH=203;; (*ITAG) Solyc03g121360.1.1 (e_value=7e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63527142-63527753 transcript_region:SL2.40ch03:63527142..63527753+ go_terms:GO:0042802,GO:0019904 functional_description:"Charged multivesicular body protein 1b (AHRD V1 ***- B6T9W6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802,GO:0019904 NbS00013374g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.83|1|1|1|6|0|312; (*SWP) sp|Q6GLX7|CWC27_XENLA (e_value=5e-76) Peptidyl-prolyl cis-trans isomerase CWC27 homolog OS=Xenopus laevis GN=cwc27 PE=2 SV=1;; (*TAIR) AT4G33060.1 (e_value=8e-127) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15948535-15951954 FORWARD LENGTH=504;; (*ITAG) Solyc08g062700.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48997752-49017259 transcript_region:SL2.40ch08:48997752..49017259- go_terms:GO:0005634,GO:0006457 functional_description:"Peptidyl prolyl cis trans isomerase-like (AHRD V1 ***- Q5ZB85_ORYSJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005634,GO:0006457 NbS00015446g0008.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|4|0|172; (*SWP) sp|Q9XH43|CET2_TOBAC (e_value=2e-83) CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1;; (*TAIR) AT5G03840.1 (e_value=2e-83) | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:1024760-1025796 REVERSE LENGTH=177;; (*ITAG) Solyc09g009560.1.1 (e_value=1e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2968569-2971135 transcript_region:SL2.40ch09:2968569..2971135+ go_terms:GO:0008429 functional_description:"SELF PRUNING 9D"; GO:0008429 NbS00015446g0005.1 protein AED:0.15 eAED:0.18 QI:273|0.66|0.5|1|0.33|0.5|4|0|412; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=1e-153) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=9e-155) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc10g083480.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62586400-62588141 transcript_region:SL2.40ch10:62586400..62588141- functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00016428g0008.1 protein AED:0.00 eAED:0.00 QI:82|1|1|1|1|1|2|130|73; (*TAIR) AT3G17580.1 (e_value=4e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6015276-6015518 FORWARD LENGTH=80;; (*ITAG) Solyc05g053180.2.1 (e_value=1e-44) genomic_reference:SL2.40ch05 gene_region:62454616-62455362 transcript_region:SL2.40ch05:62454616..62455362+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016428g0009.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|0|160; (*TAIR) AT1G04560.1 (e_value=6e-61) | Symbols: | AWPM-19-like family protein | chr1:1245070-1245888 FORWARD LENGTH=186;; (*ITAG) Solyc05g053160.2.1 (e_value=3e-79) genomic_reference:SL2.40ch05 gene_region:62438344-62440293 transcript_region:SL2.40ch05:62438344..62440293- functional_description:"Plasma membrane associated protein (AHRD V1 ***- B6SJ93_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00016428g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|0.83|1|1|1|6|0|327; (*SWP) sp|Q6MEE7|TRUA1_PARUW (e_value=4e-63) tRNA pseudouridine synthase A 1 OS=Protochlamydia amoebophila (strain UWE25) GN=truA1 PE=3 SV=1;; (*TAIR) AT3G06950.1 (e_value=1e-148) | Symbols: | Pseudouridine synthase family protein | chr3:2192869-2194254 FORWARD LENGTH=323;; (*ITAG) Solyc05g053190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62456075-62460586 transcript_region:SL2.40ch05:62456075..62460586- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase A (AHRD V1 **** B9XDA1_9BACT); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00000145g0004.1 protein AED:0.37 eAED:0.80 QI:0|0.33|0|1|1|0.75|4|0|180 NbS00000145g0003.1 protein AED:0.17 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|83; (*SWP) sp|Q9C9R3|T112B_ARATH (e_value=5e-29) TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1;; (*TAIR) AT1G78190.1 (e_value=3e-30) | Symbols: | Trm112p-like protein | chr1:29418620-29418994 REVERSE LENGTH=124;; (*ITAG) Solyc04g074150.1.1 (e_value=2e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:57741096-57741443 transcript_region:SL2.40ch04:57741096..57741443- go_terms:GO:0008276 functional_description:"Methyltransferase-associated protein (AHRD V1 **** C1FDA9_9CHLO); contains Interpro domain(s) IPR005651 Protein of unknown function DUF343 "; GO:0008276 NbS00000145g0010.1 protein AED:0.24 eAED:0.24 QI:207|0.41|0.61|1|0.58|0.61|13|0|761; (*SWP) sp|P52711|CBP23_HORVU (e_value=4e-122) Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1;; (*TAIR) AT3G63470.1 (e_value=2e-116) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g108460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87543831-87549991 transcript_region:SL2.40ch01:87543831..87549991- go_terms:GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 *-** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0004185 NbS00002678g0101.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|431 NbS00040030g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|166; (*SWP) sp|Q9M7R0|ALL8_OLEEU (e_value=3e-64) Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1;; (*TAIR) AT1G18210.2 (e_value=7e-58) | Symbols: | Calcium-binding EF-hand family protein | chr1:6268273-6268785 REVERSE LENGTH=170;; (*ITAG) Solyc03g118810.1.1 (e_value=4e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:61676281-61676775 transcript_region:SL2.40ch03:61676281..61676775+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D8TKN5_VOLCA); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00011430g0017.1 protein AED:0.10 eAED:0.10 QI:214|0.33|0.5|1|0.33|0.75|4|431|279; (*ITAG) Solyc08g082000.2.1 (e_value=7e-28) genomic_reference:SL2.40ch08 gene_region:62081443-62086358 transcript_region:SL2.40ch08:62081443..62086358- functional_description:"Genomic DNA chromosome 5 TAC clone K19E1 (AHRD V1 *-*- Q9FK19_ARATH)"; NbS00011430g0012.1 protein AED:0.17 eAED:0.17 QI:169|1|0.87|1|1|1|8|648|355; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=9e-75) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT4G01100.1 (e_value=0.0) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=352;; (*ITAG) Solyc08g082020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62100535-62107680 transcript_region:SL2.40ch08:62100535..62107680- go_terms:GO:0015228 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015228 NbS00011430g0018.1 protein AED:0.27 eAED:0.28 QI:0|0.62|0.44|0.88|0.62|0.44|9|762|1074; (*SWP) sp|Q9T014|SPA2_ARATH (e_value=0.0) Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2;; (*TAIR) AT4G11110.1 (e_value=0.0) | Symbols: SPA2 | SPA1-related 2 | chr4:6772163-6776675 FORWARD LENGTH=1036;; (*ITAG) Solyc08g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62067369-62074700 transcript_region:SL2.40ch08:62067369..62074700- go_terms:GO:0042802 functional_description:"WD-40 repeat (AHRD V1 *--- Q3M9A6_ANAVT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00011430g0009.1 protein AED:0.35 eAED:0.62 QI:0|0|0|1|1|1|2|0|88; (*TAIR) AT5G41761.1 (e_value=1e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc05g050250.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59432993-59433286 transcript_region:SL2.40ch05:59432993..59433286- functional_description:"Unknown Protein (AHRD V1)"; NbS00011430g0019.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|3|0|1430; (*TAIR) AT5G41790.1 (e_value=9e-56) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc08g082010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62095443-62099923 transcript_region:SL2.40ch08:62095443..62099923+ go_terms:GO:0005515 functional_description:"Myosin heavy chain-like protein (AHRD V1 *-*- Q9FJ35_ARATH); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0005515 NbS00011430g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|805; (*SWP) sp|P25848|PHY1_CERPU (e_value=2e-36) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT5G41730.1 (e_value=1e-173) | Symbols: | Protein kinase family protein | chr5:16684914-16687145 REVERSE LENGTH=711;; (*ITAG) Solyc08g081980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62063601-62066787 transcript_region:SL2.40ch08:62063601..62066787+ go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase A-Raf (AHRD V1 *-** ARAF_PIG); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0004712 NbS00019258g0005.1 protein AED:0.18 eAED:0.18 QI:132|0.91|1|1|0.83|0.92|13|121|651; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G48460.1 (e_value=0.0) | Symbols: | Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654;; (*ITAG) Solyc06g083070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44904703-44911714 transcript_region:SL2.40ch06:44904703..44911714- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00013589g0009.1 protein AED:0.20 eAED:0.20 QI:132|0.66|0.75|1|1|1|4|242|314; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=8e-54) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT5G20400.1 (e_value=4e-105) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6894871-6896185 FORWARD LENGTH=348;; (*ITAG) Solyc10g086780.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64826324-64828745 transcript_region:SL2.40ch10:64826324..64828745+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00013589g0004.1 protein AED:0.47 eAED:0.48 QI:0|0|0|1|1|1|2|0|72 NbS00013589g0010.1 protein AED:0.15 eAED:0.18 QI:0|0.33|0|0.75|0.66|0.5|4|0|390; (*SWP) sp|Q9LMR3|TYRA2_ARATH (e_value=4e-132) Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1;; (*TAIR) AT1G15710.1 (e_value=3e-133) | Symbols: | prephenate dehydrogenase family protein | chr1:5404505-5405581 FORWARD LENGTH=358;; (*ITAG) Solyc07g007590.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2239957-2241090 transcript_region:SL2.40ch07:2239957..2241090- go_terms:GO:0008152,GO:0006571 functional_description:"Prephenate dehydrogenase family protein (AHRD V1 ***- D7KDI5_ARALY); contains Interpro domain(s) IPR012070 Arogenate/prephenate dehydrogenase, plant "; GO:0008152,GO:0006571 NbS00011212g0004.1 protein AED:0.13 eAED:0.13 QI:0|0|0.25|1|0|0|4|0|183; (*SWP) sp|A7PHN8|CSPL4_VITVI (e_value=8e-22) CASP-like protein VIT_17s0000g00560 OS=Vitis vinifera GN=VIT_17s0000g00560 PE=2 SV=2;; (*ITAG) Solyc03g097730.1.1 (e_value=6e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53520749-53521685 transcript_region:SL2.40ch03:53520749..53521685+ functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00002755g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|248; (*SWP) sp|Q9LNW3|P2C03_ARATH (e_value=6e-36) Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1;; (*TAIR) AT1G07430.1 (e_value=5e-37) | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | chr1:2281151-2282656 REVERSE LENGTH=442;; (*ITAG) Solyc03g007230.2.1 (e_value=3e-79) genomic_reference:SL2.40ch03 gene_region:1792295-1794884 transcript_region:SL2.40ch03:1792295..1794884+ go_terms:GO:0005975,GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B1B5N6_PHYPA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0005975,GO:0008287,GO:0003824 NbS00002157g0005.1 protein AED:0.42 eAED:0.72 QI:0|0|0|0.66|1|0.66|3|0|102 NbS00022948g0006.1 protein AED:0.20 eAED:0.20 QI:108|0.33|0.25|1|0|0|4|0|208; (*TAIR) AT2G47910.1 (e_value=6e-76) | Symbols: CRR6 | chlororespiratory reduction 6 | chr2:19614741-19615559 FORWARD LENGTH=246;; (*ITAG) Solyc07g007280.2.1 (e_value=5e-105) genomic_reference:SL2.40ch07 gene_region:2009907-2013237 transcript_region:SL2.40ch07:2009907..2013237- functional_description:"Conserved domain protein (AHRD V1 **-- B4W2T4_9CYAN); contains Interpro domain(s) IPR014946 Protein of unknown function DUF1817 "; NbS00014338g0008.1 protein AED:0.17 eAED:0.18 QI:0|0.58|0.46|0.84|0.66|0.76|13|0|339; (*SWP) sp|Q8H1G3|MTPC4_ARATH (e_value=2e-160) Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1;; (*TAIR) AT1G51610.1 (e_value=1e-161) | Symbols: | Cation efflux family protein | chr1:19136625-19139621 FORWARD LENGTH=457;; (*ITAG) Solyc06g063250.2.1 (e_value=7e-179) genomic_reference:SL2.40ch06 gene_region:36336794-36343467 transcript_region:SL2.40ch06:36336794..36343467- go_terms:GO:0005385,GO:0003700 functional_description:"Cation diffusion facilitator family transporter (AHRD V1 **** D0LPV3_HALO1); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0005385,GO:0003700 NbS00014338g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.91|1|1|1|1|13|498|557; (*SWP) sp|Q9C512|MNS1_ARATH (e_value=0.0) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1;; (*TAIR) AT1G51590.1 (e_value=0.0) | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1:19128315-19132132 REVERSE LENGTH=560;; (*ITAG) Solyc03g123900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64644578-64660207 transcript_region:SL2.40ch03:64644578..64660207- go_terms:GO:0004571,GO:0004559 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** Q9SEH8_SOYBN); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571,GO:0004559 NbS00048958g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|347; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=9e-94) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G44970.1 (e_value=8e-84) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc11g007210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1628496-1629588 transcript_region:SL2.40ch11:1628496..1629588- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B4FSK9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00026263g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|475; (*SWP) sp|Q0PHS9|DES_CAPAN (e_value=0.0) 9-divinyl ether synthase OS=Capsicum annuum GN=DES PE=2 SV=1;; (*TAIR) AT5G42650.1 (e_value=2e-172) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc10g007960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2121096-2122571 transcript_region:SL2.40ch10:2121096..2122571- go_terms:GO:0019825,GO:0009978 functional_description:"Allene oxide synthase (AHRD V1 **-* A0MAV5_SOYBN); contains Interpro domain(s) IPR001128 Cytochrome P450 "; GO:0019825,GO:0009978 NbS00028061g0002.1 protein AED:0.12 eAED:0.35 QI:0|0|0|1|0|0|2|0|165; (*SWP) sp|P0CC79|NU2C2_JASNU (e_value=5e-38) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Jasminum nudiflorum GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=1e-37) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=5e-38) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00006606g0003.1 protein AED:0.20 eAED:0.21 QI:102|0.66|0|1|1|1|4|0|382; (*SWP) sp|Q9ZNU2|NAC18_ARATH (e_value=8e-84) NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1;; (*TAIR) AT3G15510.1 (e_value=2e-103) | Symbols: ATNAC2, ANAC056, NARS1, NAC2 | NAC domain containing protein 2 | chr3:5243696-5245037 FORWARD LENGTH=364;; (*ITAG) Solyc07g063420.2.1 (e_value=3e-167) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00006606g0002.1 protein AED:0.30 eAED:0.30 QI:0|0.85|0.87|1|0.85|0.75|8|585|363; (*SWP) sp|Q6CIY7|SYM1_KLULA (e_value=1e-15) Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3 SV=1;; (*TAIR) AT1G52870.2 (e_value=3e-154) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr1:19685856-19687678 FORWARD LENGTH=366;; (*ITAG) Solyc07g063430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63130568-63134669 transcript_region:SL2.40ch07:63130568..63134669- go_terms:GO:0016021 functional_description:"Mpv17 protein (AHRD V1 *--- B0WWR6_CULQU); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00006968g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.89|0.9|1|0.72|0.73|30|123|1091; (*SWP) sp|Q9LRE6|DPOD1_ORYSJ (e_value=0.0) DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1;; (*TAIR) AT5G63960.1 (e_value=0.0) | Symbols: | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095;; (*ITAG) Solyc10g081250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61678761-61699648 transcript_region:SL2.40ch10:61678761..61699648+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 ***- C5Y6L0_SORBI); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003676,GO:0006260,GO:0006139 NbS00006322g0005.1 protein AED:0.10 eAED:0.10 QI:152|0.81|0.75|1|0.72|0.66|12|324|372; (*SWP) sp|P32260|CYSKP_SPIOL (e_value=1e-133) Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2;; (*TAIR) AT3G61440.1 (e_value=0.0) | Symbols: ATCYSC1, ARATH;BSAS3;1, CYSC1 | cysteine synthase C1 | chr3:22735885-22737792 FORWARD LENGTH=368;; (*ITAG) Solyc01g094790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77957010-77959726 transcript_region:SL2.40ch01:77957010..77959726+ go_terms:GO:0008152,GO:0006535,GO:0005976 functional_description:"Cysteine synthase (AHRD V1 ***- Q9FS29_SOLTU); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0008152,GO:0006535,GO:0005976 NbS00032682g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|1|1|3|0|126; (*TAIR) AT5G59400.1 (e_value=1e-54) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=299;; (*ITAG) Solyc06g076250.2.1 (e_value=2e-76) genomic_reference:SL2.40ch06 gene_region:43763435-43767560 transcript_region:SL2.40ch06:43763435..43767560+ functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 **-- Q9LTI9_ARATH)"; NbS00022258g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|167; (*SWP) sp|Q9M0U8|FBL21_ARATH (e_value=6e-22) Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1;; (*TAIR) AT4G05470.1 (e_value=5e-23) | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351 REVERSE LENGTH=304;; (*ITAG) Solyc08g006920.1.1 (e_value=9e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1492121-1494699 transcript_region:SL2.40ch08:1492121..1494699- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 4 (AHRD V1 ***- FBL4_ARATH); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515,GO:0004842 NbS00022258g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|0|1|0|229; (*SWP) sp|Q9S9V9|FBL23_ARATH (e_value=9e-34) Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1;; (*TAIR) AT4G03630.1 (e_value=7e-39) | Symbols: | RNI-like superfamily protein | chr4:1608750-1610037 FORWARD LENGTH=220;; (*ITAG) Solyc08g013820.2.1 (e_value=7e-75) genomic_reference:SL2.40ch08 gene_region:3170642-3174481 transcript_region:SL2.40ch08:3170642..3174481- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00038028g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.96|1|1|1|25|155|1077; (*SWP) sp|Q0WV90|TPR1_ARATH (e_value=0.0) Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3;; (*TAIR) AT1G80490.2 (e_value=0.0) | Symbols: TPR1 | TOPLESS-related 1 | chr1:30261094-30266446 REVERSE LENGTH=1120;; (*ITAG) Solyc08g029050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22591577-22599639 transcript_region:SL2.40ch08:22591577..22599639+ go_terms:GO:0042803,GO:0016564 functional_description:"WD-repeat protein (AHRD V1 *--- A9FTS8_SORC5); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00062251g0003.1 protein AED:0.05 eAED:0.05 QI:155|0.66|0.5|1|1|1|4|326|466; (*SWP) sp|Q94AZ2|STP13_ARATH (e_value=2e-161) Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2;; (*TAIR) AT5G26340.1 (e_value=1e-162) | Symbols: MSS1, STP13, ATSTP13 | Major facilitator superfamily protein | chr5:9243851-9246994 REVERSE LENGTH=526;; (*ITAG) Solyc09g075820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62931041-62936921 transcript_region:SL2.40ch09:62931041..62936921- go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CANFA); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00004264g0022.1 protein AED:0.16 eAED:0.17 QI:379|0.75|0.70|1|0.81|0.76|17|0|1009; (*SWP) sp|Q66X93|SND1_RAT (e_value=1e-138) Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1;; (*TAIR) AT5G07350.1 (e_value=0.0) | Symbols: Tudor1, AtTudor1, TSN1 | TUDOR-SN protein 1 | chr5:2320344-2324892 REVERSE LENGTH=991;; (*ITAG) Solyc03g118020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61058382-61065557 transcript_region:SL2.40ch03:61058382..61065557- go_terms:GO:0003713,GO:0003723 functional_description:"Tudor / nuclease domain-containing protein (AHRD V1 ***- B6KG97_TOXGO); contains Interpro domain(s) IPR016685 RNA-induced silencing complex, nuclease component Tudor-SN "; GO:0003713,GO:0003723 NbS00004264g0007.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc02g077730.2.1 (e_value=8e-28) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004264g0028.1 protein AED:0.31 eAED:0.31 QI:170|1|1|1|0.5|0.8|5|340|184; (*TAIR) AT5G51040.1 (e_value=1e-81) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). | chr5:20750700-20751790 FORWARD LENGTH=188;; (*ITAG) Solyc03g118110.2.1 (e_value=4e-120) genomic_reference:SL2.40ch03 gene_region:61127336-61132194 transcript_region:SL2.40ch03:61127336..61132194+ functional_description:"Succinate dehydrogenase assembly factor 2, mitochondrial (AHRD V1 *--- SDHF2_CAEBR); contains Interpro domain(s) IPR005631 Protein of unknown function DUF339 "; NbS00004264g0025.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|313; (*SWP) sp|Q28960|CBR1_PIG (e_value=3e-64) Carbonyl reductase [NADPH] 1 OS=Sus scrofa GN=CBR1 PE=1 SV=3;; (*TAIR) AT5G51030.1 (e_value=5e-164) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314;; (*ITAG) Solyc03g118100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61125398-61127888 transcript_region:SL2.40ch03:61125398..61127888- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 *-*- DHRS7_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00004264g0002.1 protein AED:0.14 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|457; (*SWP) sp|Q9FLS9|PP441_ARATH (e_value=3e-157) Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1;; (*TAIR) AT5G61800.1 (e_value=2e-158) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24830054-24831553 REVERSE LENGTH=499;; (*ITAG) Solyc03g118080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61108338-61110201 transcript_region:SL2.40ch03:61108338..61110201- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M9E6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00004264g0031.1 protein AED:0.17 eAED:0.17 QI:310|1|1|1|0.5|0.6|5|120|161; (*TAIR) AT5G51010.1 (e_value=8e-54) | Symbols: | Rubredoxin-like superfamily protein | chr5:20744615-20745344 FORWARD LENGTH=154;; (*ITAG) Solyc03g118130.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:61134543-61136309 transcript_region:SL2.40ch03:61134543..61136309- go_terms:GO:0046872 functional_description:"Rubredoxin-like protein (AHRD V1 *--- A8JGB1_CHLRE); contains Interpro domain(s) IPR004039 Rubredoxin-type Fe(Cys)4 protein "; GO:0046872 NbS00004264g0029.1 protein AED:0.21 eAED:0.25 QI:0|0.75|0.2|1|0.75|0.6|5|0|510; (*SWP) sp|A2CEQ0|SCM2B_DANRE (e_value=2e-98) Calcium-binding mitochondrial carrier protein SCaMC-2-B OS=Danio rerio GN=slc25a25b PE=3 SV=2;; (*TAIR) AT5G51050.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:20753381-20755714 FORWARD LENGTH=487;; (*ITAG) Solyc03g118090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61114407-61118294 transcript_region:SL2.40ch03:61114407..61118294- go_terms:GO:0005509 functional_description:"Calcium-binding mitochondrial carrier protein SCaMC-1 (AHRD V1 **** B5X2X8_SALSA); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005509 NbS00020803g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|248; (*TAIR) AT2G17740.1 (e_value=1e-34) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:7707082-7707828 REVERSE LENGTH=248;; (*ITAG) Solyc01g073800.2.1 (e_value=3e-89) genomic_reference:SL2.40ch01 gene_region:70406076-70406992 transcript_region:SL2.40ch01:70406076..70406992- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; NbS00020803g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|257; (*TAIR) AT2G44380.1 (e_value=5e-36) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073800.2.1 (e_value=2e-118) genomic_reference:SL2.40ch01 gene_region:70406076-70406992 transcript_region:SL2.40ch01:70406076..70406992- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q8H5Y9_ORYSJ); contains Interpro domain(s) IPR011424 C1-like "; NbS00020803g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|85; (*ITAG) Solyc01g073820.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:70420820-70421766 transcript_region:SL2.40ch01:70420820..70421766- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00020803g0007.1 protein AED:0.65 eAED:0.75 QI:0|0|0|0.5|1|1|2|0|143; (*ITAG) Solyc01g073820.2.1 (e_value=7e-11) genomic_reference:SL2.40ch01 gene_region:70420820-70421766 transcript_region:SL2.40ch01:70420820..70421766- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00044151g0003.1 protein AED:0.06 eAED:0.03 QI:267|1|0.8|1|0.75|0.8|5|657|470; (*SWP) sp|Q67UL3|PIN1C_ORYSJ (e_value=0.0) Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1;; (*TAIR) AT1G73590.1 (e_value=0.0) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622;; (*ITAG) Solyc10g078370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59518688-59521564 transcript_region:SL2.40ch10:59518688..59521564+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier (AHRD V1 ***- D6RT09_SOLLC); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0016021 NbS00010093g0008.1 protein AED:0.05 eAED:0.05 QI:49|1|1|1|0.5|0.33|3|452|136; (*SWP) sp|Q53MB8|TLPH_ORYSJ (e_value=1e-38) Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1;; (*TAIR) AT1G75050.1 (e_value=3e-41) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:28180116-28181062 FORWARD LENGTH=246;; (*ITAG) Solyc01g086840.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73529363-73530802 transcript_region:SL2.40ch01:73529363..73530802+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q5DWG1_CRYJA); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00010093g0004.1 protein AED:0.00 eAED:0.00 QI:427|1|1|1|1|1|2|453|225; (*SWP) sp|P25766|RLGP1_ORYSJ (e_value=9e-130) Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2;; (*TAIR) AT5G47960.1 (e_value=1e-127) | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog A4C | chr5:19421533-19422473 REVERSE LENGTH=223;; (*ITAG) Solyc01g086850.2.1 (e_value=3e-148) genomic_reference:SL2.40ch01 gene_region:73531859-73536531 transcript_region:SL2.40ch01:73531859..73536531- go_terms:GO:0005525 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_HUMAN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525 NbS00010093g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|136; (*SWP) sp|P68428|H32_WHEAT (e_value=3e-80) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=2e-81) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00053423g0005.1 protein AED:0.26 eAED:0.28 QI:0|0.7|0.72|1|0.7|0.81|11|277|401; (*SWP) sp|A6H213|SURE_FLAPJ (e_value=3e-25) 5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1;; (*TAIR) AT1G72880.1 (e_value=3e-133) | Symbols: | Survival protein SurE-like phosphatase/nucleotidase | chr1:27423678-27425928 REVERSE LENGTH=385;; (*ITAG) Solyc03g121730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63857885-63862728 transcript_region:SL2.40ch03:63857885..63862728+ go_terms:GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 *-*- Q1JYK3_DESAC); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0003993 NbS00034553g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|0.5|2|0|60; (*TAIR) AT3G14080.2 (e_value=1e-31) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128;; (*ITAG) Solyc06g062980.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:36140594-36143279 transcript_region:SL2.40ch06:36140594..36143279+ go_terms:GO:0005515,GO:0000339 functional_description:"U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0000339 NbS00034553g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|598; (*SWP) sp|O54922|EXOC7_RAT (e_value=4e-24) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT1G72470.1 (e_value=0.0) | Symbols: ATEXO70D1, EXO70D1 | exocyst subunit exo70 family protein D1 | chr1:27283759-27285660 FORWARD LENGTH=633;; (*ITAG) Solyc06g062990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36145808-36147598 transcript_region:SL2.40ch06:36145808..36147598- go_terms:GO:0005515 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00026041g0011.1 protein AED:0.10 eAED:0.12 QI:165|0.66|0.75|1|0.66|0.75|4|368|127; (*SWP) sp|P0C8Z0|Y8359_ORYSI (e_value=6e-28) Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2;; (*TAIR) AT4G02450.2 (e_value=5e-26) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc09g075010.2.1 (e_value=4e-27) genomic_reference:SL2.40ch09 gene_region:62288817-62293083 transcript_region:SL2.40ch09:62288817..62293083- functional_description:"Prostaglandin E synthase 3 (AHRD V1 *--- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00026041g0013.1 protein AED:0.28 eAED:0.28 QI:141|0.84|0.85|1|0.92|0.85|14|0|341; (*SWP) sp|O22315|SRSF1_ARATH (e_value=2e-72) Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1;; (*TAIR) AT1G02840.3 (e_value=2e-73) | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:626918-629583 FORWARD LENGTH=303;; (*ITAG) Solyc09g075090.1.1 (e_value=2e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62395517-62400644 transcript_region:SL2.40ch09:62395517..62400644- go_terms:GO:0050733 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- Q176A9_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0050733 NbS00026041g0003.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|75; (*TAIR) AT2G42800.1 (e_value=9e-13) | Symbols: AtRLP29, RLP29 | receptor like protein 29 | chr2:17808157-17809545 REVERSE LENGTH=462;; (*ITAG) Solyc10g007830.1.1 (e_value=1e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2039278-2040606 transcript_region:SL2.40ch10:2039278..2040606+ go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00026041g0015.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|131; (*SWP) sp|Q0ZJ32|ATPI_VITVI (e_value=2e-26) ATP synthase subunit a, chloroplastic OS=Vitis vinifera GN=atpI PE=3 SV=1;; (*ITAG) ATCG00150.1 (e_value=2e-24) | Symbols: ATPI | ATPase, F0 complex, subunit A protein | chrC:14021-14770 REVERSE LENGTH=249;; (*ITAG) Solyc10g044560.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22280180-22280758 transcript_region:SL2.40ch10:22280180..22280758- go_terms:GO:0046933,GO:0016820 functional_description:"ATP synthase subunit a chloroplastic (AHRD V1 **** D3WAR6_AUCJA); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0046933,GO:0016820 NbS00018816g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|0.33|0.25|4|0|115; (*SWP) sp|P32438|YPOL_THETH (e_value=5e-14) IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1;; (*TAIR) AT4G38090.2 (e_value=7e-30) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr4:17883975-17884702 REVERSE LENGTH=189;; (*ITAG) Solyc11g010510.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3569232-3571588 transcript_region:SL2.40ch11:3569232..3571588+ functional_description:"Thymidylate synthase (Fragment) (AHRD V1 **-- C3WJ73_9FUSO); contains Interpro domain(s) IPR001498 Uncharacterised protein family UPF0029, N-terminal "; NbS00018816g0010.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.44|0.62|0.66|9|0|470; (*ITAG) Solyc08g044370.1.1 (e_value=6e-69) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00008072g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|378; (*TAIR) AT1G19900.1 (e_value=2e-153) | Symbols: | glyoxal oxidase-related protein | chr1:6907038-6908684 REVERSE LENGTH=548;; (*ITAG) Solyc04g081130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00040938g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.66|3|0|334; (*TAIR) AT4G29310.1 (e_value=2e-132) | Symbols: | Protein of unknown function (DUF1005) | chr4:14437892-14439609 REVERSE LENGTH=424;; (*ITAG) Solyc12g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1996212-1999348 transcript_region:SL2.40ch12:1996212..1999348+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00033148g0003.1 protein AED:0.20 eAED:0.20 QI:347|1|1|1|1|1|2|318|368; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=5e-124) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1;; (*TAIR) AT3G22830.1 (e_value=4e-125) | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription factor A6B | chr3:8078981-8080895 FORWARD LENGTH=406;; (*ITAG) Solyc09g082670.2.1 (e_value=4e-172) genomic_reference:SL2.40ch09 gene_region:63781968-63784228 transcript_region:SL2.40ch09:63781968..63784228+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00059501g0006.1 protein AED:0.25 eAED:0.25 QI:0|0.76|0.81|1|0.85|0.95|22|288|1008; (*SWP) sp|Q96JG6|CC132_HUMAN (e_value=6e-28) Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3;; (*TAIR) AT2G27900.2 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49378146-49397877 transcript_region:SL2.40ch11:49378146..49397877- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019515 Protein of unknown function DUF2450, N-terminal "; NbS00019927g0006.1 protein AED:0.39 eAED:0.39 QI:31|1|1|1|0.5|0.6|5|36|298; (*TAIR) AT4G29960.1 (e_value=1e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14660753-14662274 REVERSE LENGTH=291;; (*ITAG) Solyc07g008780.2.1 (e_value=1e-128) genomic_reference:SL2.40ch07 gene_region:3757516-3765647 transcript_region:SL2.40ch07:3757516..3765647+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023527g0005.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|1|1|2|99|379; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=3e-23) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G63200.1 (e_value=0.0) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00034063g0005.1 protein AED:0.04 eAED:0.04 QI:316|1|1|1|1|1|3|388|187; (*TAIR) AT5G02600.1 (e_value=6e-27) | Symbols: NAKR1 | Heavy metal transport/detoxification superfamily protein | chr5:585713-586855 REVERSE LENGTH=319;; (*ITAG) Solyc01g105000.2.1 (e_value=2e-86) genomic_reference:SL2.40ch01 gene_region:85070623-85071931 transcript_region:SL2.40ch01:85070623..85071931+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- D3GC04_9ROSI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00034063g0006.1 protein AED:0.35 eAED:0.36 QI:0|1|0.71|1|0.83|0.71|7|624|264; (*SWP) sp|Q923W1|TGS1_MOUSE (e_value=1e-69) Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2;; (*TAIR) AT1G30550.1 (e_value=1e-102) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10820838-10823641 REVERSE LENGTH=455;; (*ITAG) Solyc01g104990.2.1 (e_value=2e-146) genomic_reference:SL2.40ch01 gene_region:85064760-85069270 transcript_region:SL2.40ch01:85064760..85069270+ go_terms:GO:0005515,GO:0008990 functional_description:"Trimethylguanosine synthase (AHRD V1 **-- D0N6V7_PHYIN); contains Interpro domain(s) IPR019012 RNA cap guanine-N2 methyltransferase "; GO:0005515,GO:0008990 NbS00005064g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|619; (*TAIR) AT1G12380.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:4214499-4216880 REVERSE LENGTH=793;; (*ITAG) Solyc08g079550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60220573-60223038 transcript_region:SL2.40ch08:60220573..60223038- functional_description:"HAT family dimerisation domain containing protein (AHRD V1 *-*- Q2QMZ1_ORYSJ)"; NbS00005064g0002.1 protein AED:0.39 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|198; (*TAIR) AT1G12380.1 (e_value=2e-50) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62870.1); Has 173 Blast hits to 170 proteins in 34 species: Archae - 0; Bacteria - 4; Metazoa - 25; Fungi - 8; Plants - 123; Viruses - 7; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:4214499-4216880 REVERSE LENGTH=793;; (*ITAG) Solyc08g079550.1.1 (e_value=5e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60220573-60223038 transcript_region:SL2.40ch08:60220573..60223038- functional_description:"HAT family dimerisation domain containing protein (AHRD V1 *-*- Q2QMZ1_ORYSJ)"; NbS00014822g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.83|1|0.8|0.66|6|9|370; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=9e-22) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=5e-52) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc10g076460.1.1 (e_value=3e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58766004-58767607 transcript_region:SL2.40ch10:58766004..58767607+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q2QYV2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00003405g0009.1 protein AED:0.39 eAED:0.39 QI:0|0.7|0.54|0.81|0.4|0.54|11|0|278; (*SWP) sp|Q3U2U7|MET17_MOUSE (e_value=4e-24) Methyltransferase-like protein 17, mitochondrial OS=Mus musculus GN=Mettl17 PE=2 SV=2;; (*TAIR) AT1G64600.1 (e_value=1e-119) | Symbols: | methyltransferases;copper ion binding | chr1:23995996-23998625 FORWARD LENGTH=537;; (*ITAG) Solyc08g082880.2.1 (e_value=8e-168) genomic_reference:SL2.40ch08 gene_region:62705443-62710758 transcript_region:SL2.40ch08:62705443..62710758+ go_terms:GO:0006412,GO:0005507 functional_description:"Ribosomal small subunit Rsm22 (AHRD V1 *-*- D9TLZ5_CLOTS); contains Interpro domain(s) IPR015324 Ribosomal protein Rsm22, bacterial-type "; GO:0006412,GO:0005507 NbS00007852g0029.1 protein AED:0.11 eAED:0.18 QI:0|0.6|0.33|1|0.4|0.5|6|0|421; (*SWP) sp|Q38898|AKT2_ARATH (e_value=7e-172) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=5e-173) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00007852g0026.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|399; (*SWP) sp|P48979|PGLR_PRUPE (e_value=3e-162) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT3G59850.1 (e_value=2e-162) | Symbols: | Pectin lyase-like superfamily protein | chr3:22109343-22111566 REVERSE LENGTH=388;; (*ITAG) Solyc12g019230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9708477-9710424 transcript_region:SL2.40ch12:9708477..9710424+ go_terms:GO:0005975 functional_description:"Polygalacturonase 1 (AHRD V1 ***- O22311_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00007852g0030.1 protein AED:0.08 eAED:0.10 QI:0|0.71|0.37|1|0.14|0.25|8|0|1479; (*SWP) sp|Q6BDA0|ELF6_ARATH (e_value=0.0) Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1;; (*TAIR) AT5G04240.1 (e_value=0.0) | Symbols: ELF6 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340;; (*ITAG) Solyc04g028560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:28612676-28615872 transcript_region:SL2.40ch04:28612676..28615872- go_terms:GO:0003700 functional_description:"Zinc finger transcription factor (AHRD V1 *-** Q7K9G4_DROME); contains Interpro domain(s) IPR013087 Zinc finger, C2H2-type/integrase, DNA-binding "; GO:0003700 NbS00007852g0033.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|0.66|0.75|4|0|328; (*SWP) sp|P48979|PGLR_PRUPE (e_value=5e-87) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43890.1 (e_value=4e-136) | Symbols: | Pectin lyase-like superfamily protein | chr2:18176924-18178390 FORWARD LENGTH=392;; (*ITAG) Solyc12g019120.1.1 (e_value=9e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9152746-9156572 transcript_region:SL2.40ch12:9152746..9156572- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q1A230_PRUDO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00007852g0027.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.75|1|1|4|0|281; (*SWP) sp|P48979|PGLR_PRUPE (e_value=8e-79) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43880.1 (e_value=2e-101) | Symbols: | Pectin lyase-like superfamily protein | chr2:18173034-18174482 FORWARD LENGTH=394;; (*ITAG) Solyc12g019140.1.1 (e_value=5e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9293132-9295123 transcript_region:SL2.40ch12:9293132..9295123+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00024948g0012.1 protein AED:0.32 eAED:0.32 QI:0|1|0.85|1|0.33|0.42|7|274|419; (*SWP) sp|Q8L7E9|MCAC1_ARATH (e_value=0.0) Protein MID1-COMPLEMENTING ACTIVITY 1 OS=Arabidopsis thaliana GN=MCA1 PE=2 SV=1;; (*TAIR) AT4G35920.2 (e_value=0.0) | Symbols: MCA1 | PLAC8 family protein | chr4:17012106-17014192 REVERSE LENGTH=421;; (*ITAG) Solyc02g083540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41475623-41481382 transcript_region:SL2.40ch02:41475623..41481382- functional_description:"Protein kinase domain containing protein (AHRD V1 *--- Q2R001_ORYSJ); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00024948g0013.1 protein AED:0.37 eAED:0.37 QI:61|1|0.33|1|1|0.66|3|0|83; (*SWP) sp|Q5M8Z2|PREY_XENTR (e_value=2e-17) Protein preY, mitochondrial OS=Xenopus tropicalis GN=prey PE=2 SV=1;; (*TAIR) AT4G35905.1 (e_value=1e-30) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17007284-17008067 REVERSE LENGTH=77;; (*ITAG) Solyc03g033370.2.1 (e_value=1e-42) genomic_reference:SL2.40ch03 gene_region:9213975-9215729 transcript_region:SL2.40ch03:9213975..9215729- go_terms:GO:0005515 functional_description:"PreY mitochondrial (AHRD V1 ***- B5XAT2_SALSA); contains Interpro domain(s) IPR005651 Protein of unknown function DUF343 "; GO:0005515 NbS00024948g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.4|0.33|1|0.6|0.66|6|0|312; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=1e-15) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT4G35880.1 (e_value=5e-47) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:16993339-16995721 FORWARD LENGTH=524;; (*ITAG) Solyc03g033360.1.1 (e_value=3e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9209009-9212045 transcript_region:SL2.40ch03:9209009..9212045+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin II-like (AHRD V1 **-- Q651C2_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00029634g0004.1 protein AED:0.20 eAED:0.27 QI:0|0|0|1|0.5|0.33|3|0|222; (*ITAG) Solyc12g006620.1.1 (e_value=1e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1091458-1095287 transcript_region:SL2.40ch12:1091458..1095287+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 34 (AHRD V1 ***- C3H34_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00046698g0002.1 protein AED:0.03 eAED:0.03 QI:216|1|0.5|1|0|0|2|0|853; (*SWP) sp|P0CB23|Y4862_ARATH (e_value=5e-84) Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=2 SV=1;; (*TAIR) AT4G38070.1 (e_value=2e-83) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=1513;; (*ITAG) Solyc10g047540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:36555570-36558140 transcript_region:SL2.40ch10:36555570..36558140+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046698g0009.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|1|0.5|0.66|3|0|290; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=4e-139) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT5G64330.1 (e_value=3e-140) | Symbols: NPH3, RPT3, JK218 | Phototropic-responsive NPH3 family protein | chr5:25727568-25730225 FORWARD LENGTH=746;; (*ITAG) Solyc01g105680.2.1 (e_value=4e-178) genomic_reference:SL2.40ch01 gene_region:85527440-85530485 transcript_region:SL2.40ch01:85527440..85530485+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00046698g0010.1 protein AED:0.15 eAED:0.15 QI:86|0.66|0.5|1|0|0|4|0|171; (*SWP) sp|Q9D967|MGDP1_MOUSE (e_value=7e-23) Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1;; (*TAIR) AT2G14110.1 (e_value=7e-78) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:5952005-5953002 FORWARD LENGTH=190;; (*ITAG) Solyc01g105970.2.1 (e_value=4e-82) genomic_reference:SL2.40ch01 gene_region:85731956-85735731 transcript_region:SL2.40ch01:85731956..85735731- go_terms:GO:0000287,GO:0016791 functional_description:"Magnesium-dependent phosphatase-1 family protein expressed (AHRD V1 **** Q84R45_ORYSJ); contains Interpro domain(s) IPR010036 Magnesium-dependent phosphatase-1 "; GO:0000287,GO:0016791 NbS00004134g0009.1 protein AED:0.17 eAED:0.17 QI:501|0.83|0.57|1|0.66|0.57|7|0|991; (*SWP) sp|Q37145|ACA1_ARATH (e_value=0.0) Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3;; (*TAIR) AT1G27770.1 (e_value=0.0) | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase 1 | chr1:9671912-9676010 REVERSE LENGTH=1020;; (*ITAG) Solyc04g077870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60348959-60355925 transcript_region:SL2.40ch04:60348959..60355925+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00004134g0008.1 protein AED:0.30 eAED:0.37 QI:229|0.2|0.33|1|0.2|0.16|6|0|128; (*ITAG) Solyc01g059760.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC23182845g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|57; (*ITAG) Solyc04g051200.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49214648-49215694 transcript_region:SL2.40ch04:49214648..49215694- go_terms:GO:0030054 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-- B9RFU2_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0030054 NbS00027429g0002.1 protein AED:0.07 eAED:0.10 QI:414|0|0.5|1|0|0.5|2|0|251; (*SWP) sp|Q8GUK7|RMA3_ARATH (e_value=1e-40) E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=8e-42) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc10g006960.1.1 (e_value=3e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1383858-1384559 transcript_region:SL2.40ch10:1383858..1384559- go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00002365g0022.1 protein AED:0.05 eAED:0.05 QI:14|0.66|0.75|1|0.33|0.75|4|113|328; (*SWP) sp|O65493|XCP1_ARATH (e_value=4e-169) Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1;; (*TAIR) AT4G35350.1 (e_value=3e-170) | Symbols: XCP1 | xylem cysteine peptidase 1 | chr4:16810529-16811875 FORWARD LENGTH=355;; (*ITAG) Solyc12g094700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63186285-63189004 transcript_region:SL2.40ch12:63186285..63189004+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00002365g0020.1 protein AED:0.29 eAED:0.29 QI:113|0.16|0.14|0.57|0.83|0.85|7|0|420; (*ITAG) Solyc01g059760.1.1 (e_value=6e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00002365g0023.1 protein AED:0.32 eAED:0.35 QI:0|0.4|0.33|1|0.4|0.5|6|0|381; (*TAIR) AT2G33620.4 (e_value=1e-46) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc12g094710.1.1 (e_value=1e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63190934-63194536 transcript_region:SL2.40ch12:63190934..63194536- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 *-*- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00017592g0010.1 protein AED:0.13 eAED:0.17 QI:0|0.62|0.44|1|0.62|0.55|9|0|1262; (*SWP) sp|P98204|ALA1_ARATH (e_value=0.0) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=0.0) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc01g096930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79693945-79699772 transcript_region:SL2.40ch01:79693945..79699772+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00017592g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.66|1|0.5|0.44|9|974|540; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=5e-130) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=4e-131) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc01g096940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79700923-79705018 transcript_region:SL2.40ch01:79700923..79705018- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00043457g0006.1 protein AED:0.09 eAED:0.09 QI:83|1|1|1|1|1|3|210|229; (*SWP) sp|Q9SWB6|PM36_SOYBN (e_value=3e-108) Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1;; (*TAIR) AT3G16990.1 (e_value=8e-101) | Symbols: | Haem oxygenase-like, multi-helical | chr3:5795937-5796783 REVERSE LENGTH=221;; (*ITAG) Solyc11g007570.1.1 (e_value=4e-147) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1807764-1810504 transcript_region:SL2.40ch11:1807764..1810504+ functional_description:"Transcriptional activator (AHRD V1 ***- C3FFU8_BACTB); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00043457g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|100; (*SWP) sp|Q9SWB6|PM36_SOYBN (e_value=3e-31) Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1;; (*TAIR) AT3G16990.1 (e_value=2e-28) | Symbols: | Haem oxygenase-like, multi-helical | chr3:5795937-5796783 REVERSE LENGTH=221;; (*ITAG) Solyc11g007560.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1805305-1806807 transcript_region:SL2.40ch11:1805305..1806807+ functional_description:"Seed maturation protein PM36 (AHRD V1 ***- B6TPF2_MAIZE); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00027793g0005.1 protein AED:0.10 eAED:0.09 QI:262|1|0.5|1|0.8|0.66|6|0|1143; (*SWP) sp|Q9C698|FPP6_ARATH (e_value=0.0) Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1;; (*TAIR) AT1G47900.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF869) | chr1:17647340-17651035 REVERSE LENGTH=1052;; (*ITAG) Solyc04g081260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62875381-62880736 transcript_region:SL2.40ch04:62875381..62880736+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00002399g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.81|0.70|0.94|0.75|0.82|17|59|614; (*SWP) sp|Q5XQC7|BON3_ARATH (e_value=0.0) Protein BONZAI 3 OS=Arabidopsis thaliana GN=BON3 PE=1 SV=1;; (*TAIR) AT1G08860.1 (e_value=0.0) | Symbols: BON3 | Calcium-dependent phospholipid-binding Copine family protein | chr1:2842153-2846138 FORWARD LENGTH=584;; (*ITAG) Solyc03g118200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61188206-61198586 transcript_region:SL2.40ch03:61188206..61198586- go_terms:GO:0005544 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544 NbS00037277g0011.1 protein AED:0.17 eAED:0.17 QI:0|0.86|0.92|1|0.83|0.86|38|349|1788; (*SWP) sp|Q3B724|CALS5_ARATH (e_value=0.0) Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1;; (*TAIR) AT2G13680.1 (e_value=0.0) | Symbols: CALS5, GLS2, ATGSL02 | callose synthase 5 | chr2:5695124-5706134 FORWARD LENGTH=1923;; (*ITAG) Solyc11g005980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:776828-790557 transcript_region:SL2.40ch11:776828..790557+ go_terms:GO:0016020 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8QQF0_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016020 NbS00037277g0010.1 protein AED:0.42 eAED:0.42 QI:51|0.25|0.4|0.8|0.75|1|5|300|222; (*SWP) sp|Q6YZX6|ACOC_ORYSJ (e_value=1e-29) Putative aconitate hydratase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os08g0191100 PE=3 SV=1;; (*TAIR) AT2G05710.1 (e_value=5e-28) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc07g052350.2.1 (e_value=7e-29) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbS00000024g0009.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|0|0|4|128|53 NbS00000024g0011.1 protein AED:0.24 eAED:0.25 QI:33|0.94|0.95|1|0.78|0.9|20|518|663; (*SWP) sp|Q99LI7|CSTF3_MOUSE (e_value=1e-108) Cleavage stimulation factor subunit 3 OS=Mus musculus GN=Cstf3 PE=1 SV=1;; (*TAIR) AT1G17760.1 (e_value=0.0) | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:6110208-6116271 REVERSE LENGTH=734;; (*ITAG) Solyc10g050540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45449878-45482671 transcript_region:SL2.40ch10:45449878..45482671- go_terms:GO:0005515,GO:0003729 functional_description:"mRNA 3&apos-end-processing protein rna14 (AHRD V1 **-* B6K4N2_SCHJY); contains Interpro domain(s) IPR008847 Suppressor of forked "; GO:0005515,GO:0003729 NbS00000024g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|115; (*TAIR) AT2G26520.1 (e_value=3e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11280280-11280717 FORWARD LENGTH=145;; (*ITAG) Solyc01g108330.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:87440624-87441428 transcript_region:SL2.40ch01:87440624..87441428+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000024g0012.1 protein AED:0.60 eAED:0.61 QI:0|0|0|0.5|0|0|2|0|62 NbS00004872g0005.1 protein AED:0.41 eAED:0.71 QI:33|0|0|0.33|0.8|0.66|6|0|222; (*TAIR) AT1G26180.1 (e_value=2e-27) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr1:9054824-9056526 FORWARD LENGTH=289;; (*ITAG) Solyc01g079400.2.1 (e_value=6e-32) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00004872g0006.1 protein AED:0.26 eAED:0.26 QI:240|0.8|0.85|0.95|0.55|0.61|21|427|392; (*SWP) sp|Q550W1|CAPTC_DICDI (e_value=4e-51) Uncharacterized CDP-alcohol phosphatidyltransferase class-I family protein 3 OS=Dictyostelium discoideum GN=captC PE=2 SV=1;; (*TAIR) AT1G13560.2 (e_value=0.0) | Symbols: AAPT1, ATAAPT1 | aminoalcoholphosphotransferase 1 | chr1:4638834-4641563 REVERSE LENGTH=346;; (*ITAG) Solyc05g010430.2.1 (e_value=2e-37) genomic_reference:SL2.40ch05 gene_region:4671647-4672881 transcript_region:SL2.40ch05:4671647..4672881+ functional_description:"Aminoalcoholphosphotransferase (AHRD V1 ***- Q8W1E9_BRARP)"; NbS00003885g0004.1 protein AED:0.35 eAED:0.45 QI:0|0|0|1|0|0|4|0|218; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=2e-81) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-60) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-80) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00003885g0006.1 protein AED:0.39 eAED:0.50 QI:0|0|0|1|0|0|3|0|159; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=1e-27) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=4e-27) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00003885g0005.1 protein AED:0.42 eAED:0.55 QI:0|0|0|1|0|0|2|0|121; (*SWP) sp|P09976|YCF2_TOBAC (e_value=2e-41) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=3e-34) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=1e-42) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00014020g0010.1 protein AED:0.40 eAED:0.43 QI:0|0.66|0.42|1|1|0.85|7|0|289; (*SWP) sp|Q9LV17|BH079_ARATH (e_value=6e-80) Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1;; (*TAIR) AT5G62610.1 (e_value=4e-81) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:25133117-25134600 REVERSE LENGTH=281;; (*ITAG) Solyc05g006650.2.1 (e_value=1e-77) genomic_reference:SL2.40ch05 gene_region:1311134-1316254 transcript_region:SL2.40ch05:1311134..1316254- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00014020g0009.1 protein AED:0.17 eAED:0.17 QI:59|0.5|0.8|1|0.5|0.8|5|698|235; (*TAIR) AT5G13050.1 (e_value=3e-80) | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase | chr5:4136912-4138711 REVERSE LENGTH=277;; (*ITAG) Solyc03g113590.2.1 (e_value=2e-120) genomic_reference:SL2.40ch03 gene_region:57721492-57728469 transcript_region:SL2.40ch03:57721492..57728469- go_terms:GO:0030272 functional_description:"5-formyltetrahydrofolate cyclo-ligase (AHRD V1 **** B9I331_POPTR); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0030272 NbS00014020g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|223; (*SWP) sp|Q9LMC9|GLT2_ARATH (e_value=3e-89) Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1;; (*TAIR) AT1G18980.1 (e_value=3e-90) | Symbols: | RmlC-like cupins superfamily protein | chr1:6557364-6558026 REVERSE LENGTH=220;; (*ITAG) Solyc03g113580.1.1 (e_value=7e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:57719517-57720170 transcript_region:SL2.40ch03:57719517..57720170- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- Q8H2A6_ANACO); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00033513g0013.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.61|1|0.58|0.69|13|103|673; (*SWP) sp|Q41009|TOC34_PEA (e_value=6e-105) Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1;; (*TAIR) AT5G05000.1 (e_value=5e-104) | Symbols: TOC34, ATTOC34, OEP34 | translocon at the outer envelope membrane of chloroplasts 34 | chr5:1474262-1475772 REVERSE LENGTH=313;; (*ITAG) Solyc03g095210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49620743-49622751 transcript_region:SL2.40ch03:49620743..49622751- go_terms:GO:0004872 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00033513g0012.1 protein AED:0.43 eAED:0.43 QI:269|1|0.75|1|0.66|0.5|4|0|111; (*SWP) sp|Q41009|TOC34_PEA (e_value=4e-48) Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1;; (*TAIR) AT5G05000.1 (e_value=6e-49) | Symbols: TOC34, ATTOC34, OEP34 | translocon at the outer envelope membrane of chloroplasts 34 | chr5:1474262-1475772 REVERSE LENGTH=313;; (*ITAG) Solyc05g052160.2.1 (e_value=4e-58) genomic_reference:SL2.40ch05 gene_region:61599303-61602074 transcript_region:SL2.40ch05:61599303..61602074- go_terms:GO:0005525,GO:0003924 functional_description:"Translocase of chloroplast 34 (AHRD V1 **-- B6TBT7_MAIZE); contains Interpro domain(s) IPR005688 Chloroplast protein import component Toc34 "; GO:0005525,GO:0003924 NbS00033513g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|762; (*SWP) sp|O81908|PPR2_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2;; (*TAIR) AT1G02060.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:360918-363050 REVERSE LENGTH=710;; (*ITAG) Solyc03g095200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49617776-49619908 transcript_region:SL2.40ch03:49617776..49619908+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP47_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033513g0018.1 protein AED:0.13 eAED:0.13 QI:68|0.92|0.85|1|0.61|0.85|14|712|755; (*SWP) sp|Q84JR9|TTL4_ARATH (e_value=6e-13) TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1;; (*TAIR) AT1G33400.1 (e_value=2e-100) | Symbols: TPR9 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:12104891-12109488 REVERSE LENGTH=798;; (*ITAG) Solyc03g095240.2.1 (e_value=9e-177) genomic_reference:SL2.40ch03 gene_region:49661948-49675656 transcript_region:SL2.40ch03:49661948..49675656+ functional_description:"SET and MYND domain containing 3 (AHRD V1 *-*- Q4V8B9_RAT); contains Interpro domain(s) IPR001214 SET "; NbS00013123g0009.1 protein AED:0.08 eAED:0.08 QI:69|1|0.91|1|0.90|0.83|12|87|449; (*SWP) sp|Q9SFW6|CCB24_ARATH (e_value=9e-171) Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2;; (*TAIR) AT1G76310.1 (e_value=7e-172) | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630199 REVERSE LENGTH=431;; (*ITAG) Solyc12g094600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63115248-63118094 transcript_region:SL2.40ch12:63115248..63118094- go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B (AHRD V1 **** B6V744_POPTO); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00013123g0005.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|3|0|297; (*ITAG) Solyc03g122200.1.1 (e_value=8e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00048191g0004.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|4|0|675; (*SWP) sp|Q9LP77|Y1848_ARATH (e_value=0.0) Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1;; (*TAIR) AT1G48480.1 (e_value=0.0) | Symbols: RKL1 | receptor-like kinase 1 | chr1:17918475-17920743 FORWARD LENGTH=655;; (*ITAG) Solyc11g011020.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4060635-4063522 transcript_region:SL2.40ch11:4060635..4063522+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00053371g0006.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|2|0|222; (*TAIR) AT1G24040.2 (e_value=6e-55) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:8505794-8506753 REVERSE LENGTH=319;; (*ITAG) Solyc05g005900.2.1 (e_value=2e-105) genomic_reference:SL2.40ch05 gene_region:690085-691952 transcript_region:SL2.40ch05:690085..691952- go_terms:GO:0008152 functional_description:"GCN5-related protein (AHRD V1 **-- B2D2G9_BRAOL); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00053371g0007.1 protein AED:0.36 eAED:0.36 QI:92|0.83|0.42|1|0.33|0.42|7|0|329; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=4e-84) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT1G24030.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:8503394-8505195 FORWARD LENGTH=361;; (*ITAG) Solyc05g024290.2.1 (e_value=2e-88) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00019999g0001.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|0|0.5|2|62|213; (*TAIR) AT5G25280.2 (e_value=1e-50) | Symbols: | serine-rich protein-related | chr5:8773882-8774544 FORWARD LENGTH=220;; (*ITAG) Solyc07g007330.1.1 (e_value=3e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00024193g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|156; (*TAIR) AT5G17560.1 (e_value=2e-46) | Symbols: | BolA-like family protein | chr5:5788474-5789671 FORWARD LENGTH=177;; (*ITAG) Solyc03g097360.2.1 (e_value=1e-90) genomic_reference:SL2.40ch03 gene_region:53122339-53128233 transcript_region:SL2.40ch03:53122339..53128233+ functional_description:"BolA-like (AHRD V1 ***- Q67VQ4_ORYSJ); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00024193g0009.1 protein AED:0.32 eAED:0.33 QI:0|0.92|0.86|1|0.78|0.86|15|0|974; (*SWP) sp|Q54QV3|YAKA_DICDI (e_value=7e-101) Probable serine/threonine-protein kinase yakA OS=Dictyostelium discoideum GN=yakA PE=1 SV=1;; (*TAIR) AT5G35980.1 (e_value=0.0) | Symbols: YAK1 | yeast YAK1-related gene 1 | chr5:14128551-14135984 FORWARD LENGTH=956;; (*ITAG) Solyc03g097350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53098342-53117767 transcript_region:SL2.40ch03:53098342..53117767- go_terms:GO:0016301 functional_description:"Kinase family protein (AHRD V1 **** D7MHY5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00031990g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|139|75 NbS00031990g0006.1 protein AED:0.32 eAED:0.32 QI:75|0.87|0.88|1|0.37|0.33|9|409|253; (*SWP) sp|Q3ADI0|SURE_CARHZ (e_value=3e-29) 5'-nucleotidase surE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=surE PE=3 SV=1;; (*TAIR) AT4G14930.1 (e_value=5e-75) | Symbols: | Survival protein SurE-like phosphatase/nucleotidase | chr4:8538831-8541205 FORWARD LENGTH=315;; (*ITAG) Solyc09g075990.2.1 (e_value=2e-123) genomic_reference:SL2.40ch09 gene_region:63166768-63171727 transcript_region:SL2.40ch09:63166768..63171727- go_terms:GO:0005515,GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 ***- D6YVT2_WADCW); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0005515,GO:0003993 NbS00012557g0005.1 protein AED:0.15 eAED:0.15 QI:0|1|0.94|1|0.76|0.83|18|0|832; (*SWP) sp|Q6RT24|CENPE_MOUSE (e_value=1e-106) Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1;; (*TAIR) AT1G59540.1 (e_value=0.0) | Symbols: ZCF125 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:21874083-21879382 FORWARD LENGTH=823;; (*ITAG) Solyc04g077540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60091311-60098741 transcript_region:SL2.40ch04:60091311..60098741- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9S7P3_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00006851g0006.1 protein AED:0.19 eAED:0.19 QI:169|1|1|1|0.8|0.66|6|82|386; (*SWP) sp|Q54NQ0|PSD13_DICDI (e_value=2e-80) 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1;; (*TAIR) AT5G45620.1 (e_value=0.0) | Symbols: | Proteasome component (PCI) domain protein | chr5:18501590-18503868 FORWARD LENGTH=386;; (*ITAG) Solyc09g090720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65500608-65505951 transcript_region:SL2.40ch09:65500608..65505951- go_terms:GO:0005515 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8IW48_CHLRE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00057797g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.75|1|0.66|0.75|4|0|247; (*SWP) sp|Q9C5D6|CAAT9_ARATH (e_value=2e-61) Cationic amino acid transporter 9, chloroplastic OS=Arabidopsis thaliana GN=CAT9 PE=2 SV=1;; (*TAIR) AT1G05940.1 (e_value=2e-62) | Symbols: CAT9 | cationic amino acid transporter 9 | chr1:1801365-1803942 REVERSE LENGTH=569;; (*ITAG) Solyc10g018600.1.1 (e_value=1e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:8719887-8729114 transcript_region:SL2.40ch10:8719887..8729114+ go_terms:GO:0005289 functional_description:"Amino acid transporter (AHRD V1 **** B7GLG7_ANOFW); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289 NbS00023296g0015.1 protein AED:0.10 eAED:0.10 QI:193|0.66|0.75|1|0.33|0.75|4|620|46 NbS00023296g0016.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.5|1|0.66|0.5|4|0|367; (*SWP) sp|Q86JJ0|TRM61_DICDI (e_value=1e-53) tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1;; (*TAIR) AT5G14600.1 (e_value=2e-123) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318;; (*ITAG) Solyc02g086640.2.1 (e_value=6e-178) genomic_reference:SL2.40ch02 gene_region:43875144-43877324 transcript_region:SL2.40ch02:43875144..43877324+ go_terms:GO:0005515 functional_description:"tRNA adenine-N1 methyltransferase catalytic subunit TRM61 (AHRD V1 ***- C1C0S4_9MAXI); contains Interpro domain(s) IPR014816 tRNA methyltransferase complex GCD14 subunit "; GO:0005515 NbS00023296g0017.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.5|1|0.33|0.5|4|282|194; (*SWP) sp|Q84QU8|PPT2_ORYSJ (e_value=2e-26) Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PPT2 PE=2 SV=1;; (*TAIR) AT3G01550.1 (e_value=3e-27) | Symbols: ATPPT2, PPT2 | phosphoenolpyruvate (pep)/phosphate translocator 2 | chr3:216947-218856 REVERSE LENGTH=383;; (*ITAG) Solyc02g086650.2.1 (e_value=6e-31) genomic_reference:SL2.40ch02 gene_region:43880802-43884639 transcript_region:SL2.40ch02:43880802..43884639+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** B6TIJ4_MAIZE); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00023296g0014.1 protein AED:0.27 eAED:0.27 QI:0|0.91|0.92|1|0.83|0.92|13|468|469; (*SWP) sp|Q40345|IDHP_MEDSA (e_value=0.0) Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1;; (*TAIR) AT5G14590.1 (e_value=0.0) | Symbols: | Isocitrate/isopropylmalate dehydrogenase family protein | chr5:4703533-4706627 REVERSE LENGTH=485;; (*ITAG) Solyc02g086610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43846929-43852398 transcript_region:SL2.40ch02:43846929..43852398+ go_terms:GO:0004450,GO:0005507 functional_description:"Isocitrate dehydrogenase-like protein (AHRD V1 **** Q8LPJ5_ARATH); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0004450,GO:0005507 NbS00023296g0018.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.8|0.5|6|696|184; (*TAIR) AT5G62960.1 (e_value=1e-60) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25269444-25271533 FORWARD LENGTH=347;; (*ITAG) Solyc06g005250.2.1 (e_value=1e-115) genomic_reference:SL2.40ch06 gene_region:268706-271800 transcript_region:SL2.40ch06:268706..271800+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00023296g0019.1 protein AED:0.21 eAED:0.21 QI:24|0.87|0.66|1|1|1|9|0|708; (*SWP) sp|P46942|DB10_NICSY (e_value=0.0) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT3G01540.4 (e_value=0.0) | Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619;; (*ITAG) Solyc02g086660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43884902-43894920 transcript_region:SL2.40ch02:43884902..43894920- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 *-** B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00022405g0004.1 protein AED:0.19 eAED:0.19 QI:76|0.66|0.57|1|0.5|0.28|7|0|489; (*SWP) sp|Q3E9B5|PTR51_ARATH (e_value=3e-100) Putative peptide/nitrate transporter At5g19640 OS=Arabidopsis thaliana GN=At5g19640 PE=2 SV=1;; (*TAIR) AT5G19640.1 (e_value=2e-101) | Symbols: | Major facilitator superfamily protein | chr5:6636460-6638590 FORWARD LENGTH=609;; (*ITAG) Solyc01g006440.1.1 (e_value=1e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1047474-1051067 transcript_region:SL2.40ch01:1047474..1051067- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00000047g0005.1 protein AED:0.05 eAED:0.05 QI:247|1|1|1|1|1|4|187|500; (*SWP) sp|Q7ZY36|SCM1A_XENLA (e_value=5e-106) Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-a PE=2 SV=2;; (*TAIR) AT5G51050.1 (e_value=0.0) | Symbols: | Mitochondrial substrate carrier family protein | chr5:20753381-20755714 FORWARD LENGTH=487;; (*ITAG) Solyc06g068720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38986529-38993423 transcript_region:SL2.40ch06:38986529..38993423- go_terms:GO:0005509 functional_description:"Calcium-binding mitochondrial carrier protein SCaMC-1 (AHRD V1 **** B5X2X8_SALSA); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0005509 NbS00038073g0006.1 protein AED:0.18 eAED:0.18 QI:105|0.77|0.8|1|0.44|0.6|10|286|436; (*SWP) sp|Q54UI3|WDR4_DICDI (e_value=1e-19) tRNA (guanine-N(7)-)-methyltransferase subunit WDR4 OS=Dictyostelium discoideum GN=wdr4 PE=3 SV=1;; (*TAIR) AT1G03110.1 (e_value=2e-149) | Symbols: TRM82, AtTRM82 | Transducin/WD40 repeat-like superfamily protein | chr1:749359-751796 FORWARD LENGTH=427;; (*ITAG) Solyc06g008700.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2608706-2614222 transcript_region:SL2.40ch06:2608706..2614222+ go_terms:GO:0000166 functional_description:"tRNA (Guanine-N7-)-methyltransferase subunit Trm82 (AHRD V1 **-- B6K7X4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00038073g0001.1 protein AED:0.30 eAED:0.31 QI:190|0|0.5|1|0|0.5|2|0|349; (*SWP) sp|Q9M1W7|SKI30_ARATH (e_value=3e-177) F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2;; (*TAIR) AT3G63220.2 (e_value=2e-178) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358598 REVERSE LENGTH=352;; (*ITAG) Solyc06g008690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:2606567-2607604 transcript_region:SL2.40ch06:2606567..2607604+ functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00053740g0001.1 protein AED:0.16 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|206; (*ITAG) Solyc11g065520.1.1 (e_value=9e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00053740g0004.1 protein AED:0.40 eAED:0.49 QI:0|0|0|1|1|1|2|0|168; (*ITAG) Solyc01g098070.1.1 (e_value=4e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:80428282-80428749 transcript_region:SL2.40ch01:80428282..80428749- go_terms:GO:0005634 functional_description:"MADS-box family protein (AHRD V1 *-*- D7LH07_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00028845g0015.1 protein AED:0.09 eAED:0.09 QI:418|0.87|0.88|1|0.87|0.77|9|563|431; (*SWP) sp|Q8L608|HPSE2_ARATH (e_value=0.0) Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1;; (*TAIR) AT5G61250.1 (e_value=0.0) | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632294-24634597 REVERSE LENGTH=539;; (*ITAG) Solyc03g115500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59224799-59229754 transcript_region:SL2.40ch03:59224799..59229754- go_terms:GO:0030305,GO:0004566 functional_description:"Heparanase (AHRD V1 **** C9E7B7_ORYSI); contains Interpro domain(s) IPR005199 Glycoside hydrolase family 79, N-terminal "; GO:0030305,GO:0004566 NbS00028845g0017.1 protein AED:0.14 eAED:0.14 QI:62|0.95|1|1|0.80|0.90|22|260|1197; (*SWP) sp|Q5FWF4|ZRAB3_HUMAN (e_value=4e-66) Zinc finger Ran-binding domain-containing protein 3 OS=Homo sapiens GN=ZRANB3 PE=2 SV=2;; (*TAIR) AT5G07810.1 (e_value=0.0) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein | chr5:2491412-2498484 REVERSE LENGTH=1190;; (*ITAG) Solyc03g115520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59243175-59258018 transcript_region:SL2.40ch03:59243175..59258018- go_terms:GO:0004519,GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_BOVIN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004519,GO:0005524 NbS00028845g0019.1 protein AED:0.14 eAED:0.31 QI:538|0.5|0.28|0.85|0.66|0.71|7|0|1575; (*SWP) sp|Q9BY12|SCAPE_HUMAN (e_value=1e-17) S phase cyclin A-associated protein in the endoplasmic reticulum OS=Homo sapiens GN=SCAPER PE=1 SV=1;; (*ITAG) Solyc03g115510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59233081-59241441 transcript_region:SL2.40ch03:59233081..59241441+ functional_description:"S phase cyclin A-associated protein in the endoplasmic reticulum (AHRD V1 *--- SCAPE_HUMAN)"; NbS00034467g0007.1 protein AED:0.28 eAED:0.28 QI:406|1|0.94|1|0.72|0.78|19|0|787; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=2e-140) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.6 (e_value=0.0) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785;; (*ITAG) Solyc06g083460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45145760-45153363 transcript_region:SL2.40ch06:45145760..45153363- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00022789g0001.1 protein AED:0.17 eAED:0.20 QI:0|0|0.25|0.75|1|1|4|0|352; (*SWP) sp|Q9FNL7|PTR3_ARATH (e_value=7e-113) Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1;; (*TAIR) AT5G46050.1 (e_value=5e-114) | Symbols: ATPTR3, PTR3 | peptide transporter 3 | chr5:18675062-18679071 REVERSE LENGTH=582;; (*ITAG) Solyc09g090470.2.1 (e_value=1e-162) genomic_reference:SL2.40ch09 gene_region:65329293-65336164 transcript_region:SL2.40ch09:65329293..65336164+ go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00012923g0008.1 protein AED:0.07 eAED:0.09 QI:0|0.75|0.4|0.8|1|1|5|0|171; (*SWP) sp|O32107|YUID_BACSU (e_value=1e-19) Uncharacterized membrane protein yuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1;; (*TAIR) AT1G24350.3 (e_value=4e-64) | Symbols: | Acid phosphatase/vanadium-dependent haloperoxidase-related protein | chr1:8639098-8640313 REVERSE LENGTH=186;; (*ITAG) Solyc05g014700.2.1 (e_value=2e-74) genomic_reference:SL2.40ch05 gene_region:8827126-8829797 transcript_region:SL2.40ch05:8827126..8829797+ functional_description:"Acid phosphatase/vanadium-dependent haloperoxidase related (AHRD V1 **-- B6TSR4_MAIZE); contains Interpro domain(s) IPR003832 Acid phosphatase/vanadium-dependent haloperoxidase related "; NbS00012923g0002.1 protein AED:0.15 eAED:0.15 QI:0|1|1|1|0.66|0.5|4|134|356; (*TAIR) AT1G67590.1 (e_value=4e-89) | Symbols: | Remorin family protein | chr1:25333137-25334472 REVERSE LENGTH=347;; (*ITAG) Solyc05g014710.2.1 (e_value=1e-174) genomic_reference:SL2.40ch05 gene_region:8844932-8846789 transcript_region:SL2.40ch05:8844932..8846789+ go_terms:GO:0003677 functional_description:"Remorin family protein (AHRD V1 ***- D7KET1_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00012923g0101.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.66|1|1|1|6|208|748 NbS00012923g0107.1 protein AED:0.18 eAED:0.18 QI:195|1|0.88|1|1|1|9|0|835 NbS00017400g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|0.4|1|1|1|5|0|372; (*SWP) sp|P31541|CLPAA_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc03g118340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61298619-61303516 transcript_region:SL2.40ch03:61298619..61303516- go_terms:GO:0004176 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0004176 NbS00017400g0013.1 protein AED:0.03 eAED:0.03 QI:230|1|0.5|1|1|1|2|0|105; (*SWP) sp|Q75QN6|PHS1_ARATH (e_value=2e-43) Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1;; (*TAIR) AT5G23720.3 (e_value=2e-44) | Symbols: PHS1 | dual specificity protein phosphatase family protein | chr5:7998506-8002594 FORWARD LENGTH=920;; (*ITAG) Solyc03g118350.2.1 (e_value=1e-51) genomic_reference:SL2.40ch03 gene_region:61305752-61313365 transcript_region:SL2.40ch03:61305752..61313365- go_terms:GO:0005515,GO:0004721 functional_description:"Dual specificity protein phosphatase (AHRD V1 *-** D7L3D2_ARALY); contains Interpro domain(s) IPR015275 Actin-fragmin kinase, catalytic "; GO:0005515,GO:0004721 NbS00017400g0004.1 protein AED:0.33 eAED:0.33 QI:0|0.7|0.54|0.90|1|1|11|0|928; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00017400g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.75|0.2|1|1|1|5|0|588; (*SWP) sp|P31541|CLPAA_SOLLC (e_value=0.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=0.0) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc03g118340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61298619-61303516 transcript_region:SL2.40ch03:61298619..61303516- go_terms:GO:0004176 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-* Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0004176 NbS00007315g0001.1 protein AED:0.35 eAED:0.35 QI:144|1|1|1|0.5|0.66|3|658|112; (*SWP) sp|Q3ZBN8|TIM14_BOVIN (e_value=2e-36) Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3;; (*TAIR) AT2G35795.1 (e_value=3e-65) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:15042321-15043334 FORWARD LENGTH=112;; (*ITAG) Solyc10g086040.1.1 (e_value=5e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64341569-64347037 transcript_region:SL2.40ch10:64341569..64347037- go_terms:GO:0001671 functional_description:"Mitochondrial import inner membrane translocase subunit TIM14 (AHRD V1 ***- B4FMD9_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0001671 NbS00057619g0003.1 protein AED:0.17 eAED:0.17 QI:173|1|0.75|1|1|1|4|115|567; (*SWP) sp|Q63060|GLPK_RAT (e_value=1e-167) Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1;; (*TAIR) AT1G80460.1 (e_value=0.0) | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522;; (*ITAG) Solyc03g117490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60690878-60693820 transcript_region:SL2.40ch03:60690878..60693820+ go_terms:GO:0006072,GO:0005975 functional_description:"Glycerol kinase (AHRD V1 ***- Q6RUF8_SOYBN); contains Interpro domain(s) IPR005999 Glycerol kinase "; GO:0006072,GO:0005975 NbS00033081g0004.1 protein AED:0.15 eAED:0.18 QI:0|0.8|0.81|1|1|1|11|0|780; (*SWP) sp|Q948T9|RBOHB_SOLTU (e_value=0.0) Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1;; (*TAIR) AT1G09090.2 (e_value=0.0) | Symbols: ATRBOHB, RBOHB | respiratory burst oxidase homolog B | chr1:2932743-2936495 FORWARD LENGTH=843;; (*ITAG) Solyc01g099620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81563045-81567144 transcript_region:SL2.40ch01:81563045..81567144- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00019805g0007.1 protein AED:0.24 eAED:0.35 QI:0|0|0|1|0|0|2|0|200; (*SWP) sp|Q9SGE3|H2B2_ARATH (e_value=2e-34) Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1;; (*TAIR) AT1G08170.1 (e_value=1e-35) | Symbols: | Histone superfamily protein | chr1:2562941-2563672 REVERSE LENGTH=243;; (*ITAG) Solyc06g074750.1.1 (e_value=3e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42689670-42690521 transcript_region:SL2.40ch06:42689670..42690521+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 *-*- B6SGC3_MAIZE); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbS00019805g0005.1 protein AED:0.61 eAED:0.62 QI:0|0|0|0.5|0|0|2|0|73; (*ITAG) Solyc06g074750.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42689670-42690521 transcript_region:SL2.40ch06:42689670..42690521+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 *-*- B6SGC3_MAIZE); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbS00016799g0007.1 protein AED:0.26 eAED:0.32 QI:0|0|0|1|1|1|3|0|249; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=5e-118) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT1G60900.1 (e_value=9e-117) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc12g008750.1.1 (e_value=1e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2109108-2115828 transcript_region:SL2.40ch12:2109108..2115828+ go_terms:GO:0003676,GO:0005634,GO:0000166 functional_description:"Splicing factor U2AF subunit (AHRD V1 ***- C5FT14_NANOT); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0003676,GO:0005634,GO:0000166 NbS00023965g0014.1 protein AED:0.22 eAED:0.27 QI:85|0.76|0.85|1|0.38|0.42|14|0|411; (*SWP) sp|O15457|MSH4_HUMAN (e_value=3e-58) MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=2 SV=2;; (*TAIR) AT4G17380.1 (e_value=0.0) | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4:9708742-9714068 FORWARD LENGTH=792;; (*ITAG) Solyc08g007330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1892968-1906524 transcript_region:SL2.40ch08:1892968..1906524- go_terms:GO:0005515 functional_description:"DNA mismatch repair protein mutS (AHRD V1 ***- B2W010_PYRTR); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0005515 NbS00023965g0011.1 protein AED:0.00 eAED:0.00 QI:165|1|0.66|1|1|0.66|3|0|49; (*TAIR) AT4G17420.2 (e_value=7e-25) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr4:9722378-9724443 REVERSE LENGTH=267;; (*ITAG) Solyc08g007320.2.1 (e_value=3e-27) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00023965g0010.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.57|1|0.5|0.57|7|0|240; (*TAIR) AT5G47420.1 (e_value=2e-112) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr5:19233013-19234838 FORWARD LENGTH=282;; (*ITAG) Solyc08g007320.2.1 (e_value=6e-149) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00047897g0007.1 protein AED:0.11 eAED:0.11 QI:148|1|1|1|1|0.83|6|454|604; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=0.0) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=0.0) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc03g119640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62249499-62253672 transcript_region:SL2.40ch03:62249499..62253672+ go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00047897g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.9|0.72|1|0.9|1|11|0|471; (*SWP) sp|Q38950|2AAB_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2;; (*TAIR) AT3G25800.1 (e_value=0.0) | Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587;; (*ITAG) Solyc06g069180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39339819-39347237 transcript_region:SL2.40ch06:39339819..39347237+ go_terms:GO:0017018,GO:0008601 functional_description:"Phosphatase 2A regulatory A subunit (AHRD V1 **** Q9S7C5_ORYSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017018,GO:0008601 NbS00060999g0006.1 protein AED:0.08 eAED:0.10 QI:0|1|0.5|1|1|1|2|249|151; (*TAIR) AT4G33985.1 (e_value=1e-43) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc02g090840.2.1 (e_value=2e-47) genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00003153g0003.1 protein AED:0.15 eAED:0.15 QI:171|0.94|0.94|1|0.88|0.89|19|592|920; (*SWP) sp|O82188|RDR5_ARATH (e_value=0.0) Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2;; (*TAIR) AT2G19930.1 (e_value=0.0) | Symbols: | RNA-dependent RNA polymerase family protein | chr2:8607533-8612441 REVERSE LENGTH=977;; (*ITAG) Solyc12g008410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1846727-1856324 transcript_region:SL2.40ch12:1846727..1856324+ functional_description:"RNA-dependent RNA polymerase family protein (AHRD V1 ***- D7L6F2_ARALY); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; NbS00016012g0003.1 protein AED:0.06 eAED:0.06 QI:593|0.5|0.6|1|1|1|5|13|620; (*SWP) sp|O04893|AGLU_SPIOL (e_value=0.0) Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT5G11720.1 (e_value=0.0) | Symbols: | Glycosyl hydrolases family 31 protein | chr5:3776840-3780025 FORWARD LENGTH=902;; (*ITAG) Solyc02g069670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34090361-34095126 transcript_region:SL2.40ch02:34090361..34095126- go_terms:GO:0004558 functional_description:"Alpha-glucosidase 1 (AHRD V1 **** O22444_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00060627g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|206; (*SWP) sp|Q9C635|HSFB4_ARATH (e_value=2e-38) Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1;; (*TAIR) AT1G46264.1 (e_value=1e-39) | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcription factor B4 | chr1:17224904-17226183 FORWARD LENGTH=348;; (*ITAG) Solyc11g064990.1.1 (e_value=8e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47389718-47391840 transcript_region:SL2.40ch11:47389718..47391840- go_terms:GO:0003700 functional_description:"Heat stress transcription factor (AHRD V1 **** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00047742g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|185; (*ITAG) Solyc01g065510.2.1 (e_value=7e-17) genomic_reference:SL2.40ch01 gene_region:64170598-64171539 transcript_region:SL2.40ch01:64170598..64171539- functional_description:"Unknown Protein (AHRD V1)"; NbS00012842g0001.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|225; (*SWP) sp|O49686|PYR1_ARATH (e_value=7e-92) Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1;; (*TAIR) AT4G17870.1 (e_value=5e-93) | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191;; (*ITAG) Solyc06g061180.1.1 (e_value=3e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35573953-35574594 transcript_region:SL2.40ch06:35573953..35574594+ go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYR1 (AHRD V1 **-- PYR1_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00012842g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|164; (*ITAG) Solyc01g056950.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00032259g0006.1 protein AED:0.13 eAED:0.16 QI:32|0.33|0|1|0.33|0.5|4|0|871; (*TAIR) AT2G47820.2 (e_value=6e-112) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09040.1). | chr2:19588122-19590629 FORWARD LENGTH=805;; (*ITAG) Solyc01g067090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67818751-67822171 transcript_region:SL2.40ch01:67818751..67822171- functional_description:"Homeodomain-like (AHRD V1 *-*- A2Q346_MEDTR)"; NbS00024562g0009.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|0|324; (*SWP) sp|Q43735|PER27_ARATH (e_value=5e-143) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=4e-144) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc08g075830.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57086913-57088336 transcript_region:SL2.40ch08:57086913..57088336+ go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00024562g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.6|0.66|1|1|1|6|0|376; (*SWP) sp|O23044|PER3_ARATH (e_value=3e-147) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=2e-148) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00024562g0011.1 protein AED:0.25 eAED:0.26 QI:0|0|0|0.66|0|0|3|0|66 NbS00020819g0015.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.6|1|1|1|5|0|213; (*SWP) sp|P29675|SF3_HELAN (e_value=4e-61) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G01780.1 (e_value=2e-103) | Symbols: | GATA type zinc finger transcription factor family protein | chr1:282919-284082 FORWARD LENGTH=205;; (*ITAG) Solyc01g094320.2.1 (e_value=4e-135) genomic_reference:SL2.40ch01 gene_region:77600987-77603710 transcript_region:SL2.40ch01:77600987..77603710- go_terms:GO:0042802 functional_description:"Cysteine and glycine-rich protein 3 (AHRD V1 **-- D2SQP3_PIG); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00020819g0014.1 protein AED:0.22 eAED:0.22 QI:508|0.85|0.86|1|0.78|0.8|15|551|671; (*TAIR) AT1G01770.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). | chr1:278759-282490 FORWARD LENGTH=632;; (*ITAG) Solyc01g094330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77606607-77612796 transcript_region:SL2.40ch01:77606607..77612796- functional_description:"Expressed protein with function in citronellol catabolism (AHRD V1 **-- C0VQA1_9GAMM); contains Interpro domain(s) IPR010839 Protein of unknown function DUF1446 "; NbS00020819g0019.1 protein AED:0.19 eAED:0.19 QI:330|0.81|0.83|1|0.63|0.5|12|132|706; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=0.0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=0.0) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc01g094340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77617107-77622316 transcript_region:SL2.40ch01:77617107..77622316+ go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- A0YRC5_LYNSP); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00020819g0002.1 protein AED:0.22 eAED:0.95 QI:0|0|0.5|1|0|0.5|2|20|108 NbS00030218g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.71|0.75|1|0.85|0.75|8|310|482; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-98) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT4G25640.2 (e_value=0.0) | Symbols: DTX35 | detoxifying efflux carrier 35 | chr4:13076576-13078965 REVERSE LENGTH=514;; (*ITAG) Solyc03g025250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7078420-7081500 transcript_region:SL2.40ch03:7078420..7081500+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00030218g0006.1 protein AED:0.28 eAED:0.28 QI:126|0.83|1|1|0.83|0.71|7|182|255; (*SWP) sp|Q22053|FBRL_CAEEL (e_value=1e-70) rRNA 2'-O-methyltransferase fibrillarin OS=Caenorhabditis elegans GN=fib-1 PE=2 SV=1;; (*TAIR) AT5G52470.1 (e_value=8e-64) | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin 1 | chr5:21294290-21296509 FORWARD LENGTH=308;; (*ITAG) Solyc03g025270.2.1 (e_value=3e-73) genomic_reference:SL2.40ch03 gene_region:7084840-7087888 transcript_region:SL2.40ch03:7084840..7087888- go_terms:GO:0030515 functional_description:"rRNA 2&apos-O-methyltransferase fibrillarin (AHRD V1 ***- B6JX17_SCHJY); contains Interpro domain(s) IPR000692 Fibrillarin "; GO:0030515 NbS00048826g0001.1 protein AED:0.03 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|293; (*SWP) sp|Q9XGM1|VATD_ARATH (e_value=2e-149) V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2;; (*TAIR) AT3G58730.1 (e_value=1e-150) | Symbols: | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) | chr3:21718495-21719280 REVERSE LENGTH=261;; (*ITAG) Solyc01g073690.2.1 (e_value=2e-163) genomic_reference:SL2.40ch01 gene_region:70303278-70304360 transcript_region:SL2.40ch01:70303278..70304360- go_terms:GO:0033178 functional_description:"V-type ATP synthase subunit D (AHRD V1 ***- B0WRC9_CULQU); contains Interpro domain(s) IPR002699 ATPase, V1/A1 complex, subunit D "; GO:0033178 NbS00061668g0004.1 protein AED:0.20 eAED:0.21 QI:254|0.66|0.5|1|0.66|0.5|4|0|666; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00021060g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|207|1081; (*SWP) sp|Q0WR59|Y5020_ARATH (e_value=0.0) Probable inactive receptor kinase At5g10020 OS=Arabidopsis thaliana GN=At5g10020 PE=1 SV=2;; (*TAIR) AT5G10020.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr5:3133514-3136949 FORWARD LENGTH=1048;; (*ITAG) Solyc04g054200.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51083393-51089834 transcript_region:SL2.40ch04:51083393..51089834+ go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00006644g0013.1 protein AED:0.05 eAED:0.05 QI:104|1|1|1|0.66|0.71|7|270|368; (*SWP) sp|Q9C578|RCL1_ARATH (e_value=1e-164) Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1;; (*TAIR) AT5G22100.1 (e_value=1e-165) | Symbols: | RNA cyclase family protein | chr5:7329015-7330718 FORWARD LENGTH=375;; (*ITAG) Solyc02g069340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33836050-33839560 transcript_region:SL2.40ch02:33836050..33839560+ go_terms:GO:0006396,GO:0003824 functional_description:"RNA 3&apos-terminal phosphate cyclase-like protein (AHRD V1 ***- Q67XN9_ARATH); contains Interpro domain(s) IPR016443 RNA 3'-terminal phosphate cyclase-like, eukaryotic "; GO:0006396,GO:0003824 NbS00006644g0010.1 protein AED:0.36 eAED:0.36 QI:376|1|0.88|1|0.87|0.77|9|0|282; (*SWP) sp|Q6PGS5|TM56B_XENLA (e_value=3e-18) Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1;; (*TAIR) AT1G31300.2 (e_value=2e-146) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:11194308-11195955 FORWARD LENGTH=278;; (*ITAG) Solyc02g069350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33842725-33851382 transcript_region:SL2.40ch02:33842725..33851382+ go_terms:GO:0016021 functional_description:"Transmembrane protein 56 (AHRD V1 ***- B6TI82_MAIZE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00006644g0104.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|180 NbS00006644g0118.1 protein AED:0.12 eAED:0.15 QI:0|0.71|0.5|1|0.28|0.25|8|148|993 NbS00006644g0117.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|462|600 NbS00006644g0116.1 protein AED:0.00 eAED:0.00 QI:364|1|1|1|1|1|3|541|1093 NbS00006644g0115.1 protein AED:0.11 eAED:0.11 QI:683|1|1|1|1|1|4|226|588 NbS00017807g0006.1 protein AED:0.10 eAED:0.14 QI:73|0.4|0.33|0.83|0.6|0.66|6|0|299; (*SWP) sp|Q9LDA7|P2C39_ARATH (e_value=2e-140) Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1;; (*TAIR) AT3G15260.2 (e_value=2e-141) | Symbols: | Protein phosphatase 2C family protein | chr3:5138842-5140242 FORWARD LENGTH=289;; (*ITAG) Solyc07g062970.2.1 (e_value=5e-170) genomic_reference:SL2.40ch07 gene_region:62819985-62823101 transcript_region:SL2.40ch07:62819985..62823101+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00017807g0007.1 protein AED:0.35 eAED:0.46 QI:0|0|0|1|0|0|3|0|158; (*SWP) sp|Q38740|SBP2_ANTMA (e_value=7e-20) Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1;; (*TAIR) AT3G15270.1 (e_value=9e-21) | Symbols: SPL5 | squamosa promoter binding protein-like 5 | chr3:5140624-5141256 REVERSE LENGTH=181;; (*ITAG) Solyc07g062980.2.1 (e_value=4e-29) genomic_reference:SL2.40ch07 gene_region:62823040-62824209 transcript_region:SL2.40ch07:62823040..62824209- go_terms:GO:0003700 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00010335g0005.1 protein AED:0.54 eAED:0.94 QI:0|0|0|0.66|1|0.33|3|0|94 NbS00010390g0004.1 protein AED:0.14 eAED:0.17 QI:0|0.25|0.2|1|0.25|0.2|5|0|331; (*SWP) sp|O23474|PER40_ARATH (e_value=5e-125) Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2;; (*TAIR) AT4G16270.1 (e_value=1e-125) | Symbols: | Peroxidase superfamily protein | chr4:9205038-9206483 FORWARD LENGTH=362;; (*ITAG) Solyc01g058520.2.1 (e_value=4e-177) genomic_reference:SL2.40ch01 gene_region:59706522-59708166 transcript_region:SL2.40ch01:59706522..59708166- go_terms:GO:0055114 functional_description:"Peroxidase 40 (AHRD V1 ***- D7M9X0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00044255g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|0.8|0.75|0.8|5|0|142; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=2e-56) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1;; (*TAIR) AT3G11910.1 (e_value=1e-57) | Symbols: UBP13 | ubiquitin-specific protease 13 | chr3:3761758-3770290 REVERSE LENGTH=1115;; (*ITAG) Solyc10g081610.1.1 (e_value=4e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00044255g0010.1 protein AED:0.18 eAED:0.18 QI:448|1|0.83|1|0.4|0.66|6|164|148 NbS00044255g0008.1 protein AED:0.25 eAED:0.26 QI:0|0.68|0.58|0.88|0.93|0.88|17|0|665; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc10g081610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00036338g0009.1 protein AED:0.22 eAED:0.22 QI:68|0.8|0.83|1|0.6|0.66|6|271|348; (*TAIR) AT2G14910.2 (e_value=2e-116) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:6407195-6409015 REVERSE LENGTH=366;; (*ITAG) Solyc01g107380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86699241-86704780 transcript_region:SL2.40ch01:86699241..86704780- functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00036338g0008.1 protein AED:0.27 eAED:0.27 QI:163|0.87|1|1|0.87|0.77|9|558|785; (*TAIR) AT4G34280.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc01g107360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86688549-86696639 transcript_region:SL2.40ch01:86688549..86696639+ go_terms:GO:0000166 functional_description:"Coatomer subunit beta' (AHRD V1 *--- COPB2_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00010116g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0.25|0.75|1|1|4|0|161; (*TAIR) AT3G06130.2 (e_value=6e-14) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:1853193-1854673 REVERSE LENGTH=349;; (*ITAG) Solyc09g064730.2.1 (e_value=1e-41) genomic_reference:SL2.40ch09 gene_region:57677006-57678618 transcript_region:SL2.40ch09:57677006..57678618+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00025132g0007.1 protein AED:0.06 eAED:0.06 QI:110|1|1|1|1|1|4|75|493; (*TAIR) AT3G21530.1 (e_value=2e-164) | Symbols: | DNAse I-like superfamily protein | chr3:7582828-7584448 REVERSE LENGTH=458;; (*ITAG) Solyc01g080480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72223108-72225205 transcript_region:SL2.40ch01:72223108..72225205+ functional_description:"Endonuclease/exonuclease/phosphatase family protein (AHRD V1 ***- D7L0T9_ARALY); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00025132g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.75|1|0.33|0.75|4|494|220; (*TAIR) AT4G15520.1 (e_value=2e-119) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:8862829-8864366 FORWARD LENGTH=222;; (*ITAG) Solyc01g080470.2.1 (e_value=1e-151) genomic_reference:SL2.40ch01 gene_region:72218392-72222088 transcript_region:SL2.40ch01:72218392..72222088+ go_terms:GO:0006396 functional_description:"tRNA (Guanosine-2&apos-O)-methyltransferase (AHRD V1 ***- D2TIV2_CITRI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00026292g0033.1 protein AED:0.08 eAED:0.08 QI:309|0.66|0.85|1|0.83|0.85|7|196|235; (*TAIR) AT3G27460.1 (e_value=9e-121) | Symbols: | SGF29 tudor-like domain | chr3:10159537-10161994 REVERSE LENGTH=270;; (*ITAG) Solyc02g093490.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:48924351-48928691 transcript_region:SL2.40ch02:48924351..48928691+ functional_description:"SAGA-associated factor 29 homolog (AHRD V1 ***- B5XG72_SALSA); contains Interpro domain(s) IPR010750 Protein of unknown function DUF1325 "; NbS00026292g0026.1 protein AED:0.11 eAED:0.11 QI:890|1|1|1|0.83|0.76|13|399|265; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=3e-113) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=2e-114) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc02g093520.2.1 (e_value=2e-159) genomic_reference:SL2.40ch02 gene_region:48940256-48944306 transcript_region:SL2.40ch02:48940256..48944306+ go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00026292g0032.1 protein AED:0.12 eAED:0.13 QI:0|1|0.88|1|0.75|0.77|9|448|573; (*SWP) sp|Q9RB36|TRUB_FLAJ1 (e_value=2e-60) tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=truB PE=3 SV=1;; (*TAIR) AT5G14460.1 (e_value=0.0) | Symbols: | Pseudouridine synthase family protein | chr5:4660239-4662543 REVERSE LENGTH=540;; (*ITAG) Solyc02g093460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48901701-48907222 transcript_region:SL2.40ch02:48901701..48907222+ go_terms:GO:0006396,GO:0009451 functional_description:"tRNA pseudouridine synthase B (AHRD V1 *-*- D0MI93_RHOM4); contains Interpro domain(s) IPR020103 Pseudouridine synthase, catalytic domain "; GO:0006396,GO:0009451 NbS00026292g0025.1 protein AED:0.18 eAED:0.18 QI:114|1|1|1|1|1|5|260|267; (*TAIR) AT5G14440.1 (e_value=2e-44) | Symbols: | Surfeit locus protein 2 (SURF2) | chr5:4656065-4657807 REVERSE LENGTH=292;; (*ITAG) Solyc02g093510.2.1 (e_value=7e-89) genomic_reference:SL2.40ch02 gene_region:48932450-48935377 transcript_region:SL2.40ch02:48932450..48935377+ functional_description:"cDNA clone J023001A15 full insert sequence (AHRD V1 **-- B7EFQ5_ORYSJ); contains Interpro domain(s) IPR008833 Surfeit locus 2 "; NbS00026292g0041.1 protein AED:0.06 eAED:0.06 QI:0|0.2|0.16|1|0.4|0.66|6|0|424; (*SWP) sp|Q9LY84|GDL76_ARATH (e_value=1e-160) GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1;; (*TAIR) AT5G14450.1 (e_value=1e-161) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:4658488-4660034 FORWARD LENGTH=389;; (*ITAG) Solyc02g093500.2.1 (e_value=3e-168) genomic_reference:SL2.40ch02 gene_region:48928763-48930344 transcript_region:SL2.40ch02:48928763..48930344- go_terms:GO:0004560,GO:0004091 functional_description:"GDSL esterase/lipase At5g14450 (AHRD V1 ***- GDL76_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004560,GO:0004091 NbS00026292g0037.1 protein AED:0.25 eAED:0.25 QI:202|1|0.92|1|1|1|13|0|447; (*SWP) sp|Q8VYR5|PP351_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1;; (*TAIR) AT4G35850.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16983638-16986681 FORWARD LENGTH=444;; (*ITAG) Solyc01g112020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89905974-89912214 transcript_region:SL2.40ch01:89905974..89912214- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MUM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00026292g0038.1 protein AED:0.23 eAED:0.27 QI:14|0.72|0.78|1|0.94|0.94|19|295|533; (*TAIR) AT1G67850.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF707) | chr1:25439204-25441904 FORWARD LENGTH=404;; (*ITAG) Solyc02g093470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48907262-48911703 transcript_region:SL2.40ch02:48907262..48911703- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00026292g0036.1 protein AED:0.15 eAED:0.28 QI:0|0.5|0.42|0.85|0.83|0.71|7|0|242; (*SWP) sp|Q6CFT1|ESF2_YARLI (e_value=4e-32) Pre-rRNA-processing protein ESF2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ESF2 PE=3 SV=1;; (*TAIR) AT3G56510.2 (e_value=2e-65) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:20944348-20946235 REVERSE LENGTH=257;; (*ITAG) Solyc10g008130.2.1 (e_value=2e-91) genomic_reference:SL2.40ch10 gene_region:2270922-2273383 transcript_region:SL2.40ch10:2270922..2273383+ go_terms:GO:0016251 functional_description:"Pre-rRNA-processing protein ESF2 (AHRD V1 ***- D0MVG4_PHYIN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0016251 NbS00026292g0005.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc09g005480.2.1 (e_value=7e-16) genomic_reference:SL2.40ch09 gene_region:332487-334110 transcript_region:SL2.40ch09:332487..334110- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00026292g0039.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|0|0|2|0|165; (*ITAG) Solyc02g091570.1.1 (e_value=5e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47409077-47410201 transcript_region:SL2.40ch02:47409077..47410201- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00010619g0004.1 protein AED:0.07 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|250; (*SWP) sp|O07015|RSBQ_BACSU (e_value=1e-44) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=7e-123) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092760.2.1 (e_value=4e-151) genomic_reference:SL2.40ch02 gene_region:48299203-48300720 transcript_region:SL2.40ch02:48299203..48300720+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00039660g0004.1 protein AED:0.09 eAED:0.09 QI:1167|0.75|0.6|1|0.5|0.6|5|179|415; (*TAIR) AT1G07350.1 (e_value=7e-30) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257732-2260101 REVERSE LENGTH=382;; (*ITAG) Solyc06g076670.2.1 (e_value=1e-38) genomic_reference:SL2.40ch06 gene_region:44003102-44006569 transcript_region:SL2.40ch06:44003102..44006569+ go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00058851g0001.1 protein AED:0.33 eAED:0.40 QI:0|0|0|1|1|1|2|0|138; (*SWP) sp|Q54WR8|GNA1_DICDI (e_value=3e-31) Glucosamine 6-phosphate N-acetyltransferase 1 OS=Dictyostelium discoideum GN=gna1 PE=3 SV=1;; (*TAIR) AT5G15770.1 (e_value=6e-58) | Symbols: AtGNA1, GNA1 | glucose-6-phosphate acetyltransferase 1 | chr5:5144093-5144542 REVERSE LENGTH=149;; (*ITAG) Solyc09g009780.2.1 (e_value=5e-75) genomic_reference:SL2.40ch09 gene_region:3261256-3263382 transcript_region:SL2.40ch09:3261256..3263382+ go_terms:GO:0004343 functional_description:"Glucosamine 6-phosphate N-acetyltransferase (AHRD V1 **** B6TIB6_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004343 NbS00058851g0009.1 protein AED:0.05 eAED:0.04 QI:1143|1|0.93|1|0.93|0.93|16|447|1556; (*TAIR) AT1G17450.2 (e_value=0.0) | Symbols: | B-block binding subunit of TFIIIC | chr1:5988579-5996693 REVERSE LENGTH=1844;; (*ITAG) Solyc09g009800.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3266476-3287147 transcript_region:SL2.40ch09:3266476..3287147- functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- B5BRE0_ARATH); contains Interpro domain(s) IPR007309 B-block binding subunit of TFIIIC "; NbS00058851g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|561; (*SWP) sp|Q9SR82|PP219_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1;; (*TAIR) AT3G08820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:2677122-2679179 REVERSE LENGTH=685;; (*ITAG) Solyc09g009790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3264032-3266983 transcript_region:SL2.40ch09:3264032..3266983- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00018163g0011.1 protein AED:0.32 eAED:0.32 QI:428|0.75|0.69|0.92|0.83|0.76|13|0|467; (*SWP) sp|O75912|DGKI_HUMAN (e_value=2e-45) Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1;; (*TAIR) AT2G20900.2 (e_value=0.0) | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491;; (*ITAG) Solyc07g054830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60323756-60334401 transcript_region:SL2.40ch07:60323756..60334401- go_terms:GO:0004143 functional_description:"Diacylglycerol kinase (AHRD V1 **** Q9FVD1_SOLLC); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0004143 NbS00018163g0009.1 protein AED:0.52 eAED:0.69 QI:242|0.42|0.37|0.75|0.71|0.75|8|0|127; (*SWP) sp|Q8S8N9|GOGC1_ARATH (e_value=1e-40) Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2;; (*TAIR) AT2G19950.2 (e_value=8e-42) | Symbols: GC1 | golgin candidate 1 | chr2:8616341-8621219 REVERSE LENGTH=710;; (*ITAG) Solyc12g008390.1.1 (e_value=5e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1822758-1835129 transcript_region:SL2.40ch12:1822758..1835129+ functional_description:"Golgin candidate 1 (AHRD V1 ***- GOGC1_ARATH)"; NbS00018163g0013.1 protein AED:0.46 eAED:0.46 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|218; (*SWP) sp|Q7XAB8|THF1_SOLTU (e_value=1e-114) Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1;; (*TAIR) AT2G20890.1 (e_value=8e-97) | Symbols: PSB29, THF1 | photosystem II reaction center PSB29 protein | chr2:8987783-8989185 FORWARD LENGTH=300;; (*ITAG) Solyc07g054820.2.1 (e_value=4e-85) genomic_reference:SL2.40ch07 gene_region:60318652-60325343 transcript_region:SL2.40ch07:60318652..60325343+ go_terms:GO:0005515 functional_description:"Protein thf1 (AHRD V1 ***- A0YRG1_LYNSP)"; GO:0005515 NbS00018163g0014.1 protein AED:0.47 eAED:0.53 QI:0|0|0|1|0|0|2|0|72; (*ITAG) Solyc07g054820.2.1 (e_value=9e-11) genomic_reference:SL2.40ch07 gene_region:60318652-60325343 transcript_region:SL2.40ch07:60318652..60325343+ go_terms:GO:0005515 functional_description:"Protein thf1 (AHRD V1 ***- A0YRG1_LYNSP)"; GO:0005515 NbS00044431g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|431; (*SWP) sp|O65499|ZAT3_ARATH (e_value=1e-23) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT1G02040.1 (e_value=9e-27) | Symbols: | C2H2-type zinc finger family protein | chr1:358104-359078 REVERSE LENGTH=324;; (*ITAG) Solyc05g050860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60224551-60225996 transcript_region:SL2.40ch05:60224551..60225996+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00044431g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|84; (*SWP) sp|P38389|SC61B_ARATH (e_value=8e-23) Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1;; (*TAIR) AT3G60540.2 (e_value=3e-24) | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr3:22375132-22375377 REVERSE LENGTH=81;; (*ITAG) Solyc03g116990.1.1 (e_value=4e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:60310273-60310602 transcript_region:SL2.40ch03:60310273..60310602- functional_description:"Protein transport protein Sec61 beta subunit (AHRD V1 *-*- B6UEM6_MAIZE); contains Interpro domain(s) IPR016482 Preprotein translocase Sec, Sec61-beta subunit, eukarya "; NbS00044431g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|1|0.33|0.25|4|0|277; (*SWP) sp|P22195|PER1_ARAHY (e_value=4e-131) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=5e-111) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc05g050880.2.1 (e_value=8e-161) genomic_reference:SL2.40ch05 gene_region:60237294-60239259 transcript_region:SL2.40ch05:60237294..60239259- go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q4W2V5_PICAB); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00015633g0007.1 protein AED:0.13 eAED:0.17 QI:338|0.4|0.45|0.81|0.6|0.72|11|0|1389; (*SWP) sp|Q6AWX6|SCAR1_ARATH (e_value=9e-73) Protein SCAR1 OS=Arabidopsis thaliana GN=SCAR1 PE=1 SV=1;; (*TAIR) AT2G34150.2 (e_value=7e-74) | Symbols: WAVE1 | SCAR family protein | chr2:14419432-14423259 REVERSE LENGTH=821;; (*ITAG) Solyc02g076840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36537398-36546762 transcript_region:SL2.40ch02:36537398..36546762+ functional_description:"Wiskott-Aldrich syndrome protein family member 2 (AHRD V1 *--- WASF2_MOUSE)"; NbS00001435g0001.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|1|1|2|0|440; (*SWP) sp|Q9FVN0|AMT13_SOLLC (e_value=0.0) Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1;; (*TAIR) AT4G13510.1 (e_value=0.0) | Symbols: AMT1;1, ATAMT1, ATAMT1;1 | ammonium transporter 1;1 | chr4:7858220-7859725 FORWARD LENGTH=501;; (*ITAG) Solyc03g045070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:15459921-15461303 transcript_region:SL2.40ch03:15459921..15461303+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9HP47_POPTR); contains Interpro domain(s) IPR018047 Ammonium transporter, conserved site IPR001905 Ammonium transporter "; GO:0015398 NbS00013560g0006.1 protein AED:0.15 eAED:0.15 QI:156|1|1|1|0.71|0.87|8|366|238; (*SWP) sp|Q9SHC8|VAP12_ARATH (e_value=6e-73) Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1;; (*TAIR) AT2G45140.1 (e_value=4e-74) | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611029-18612971 FORWARD LENGTH=239;; (*ITAG) Solyc08g078690.2.1 (e_value=7e-84) genomic_reference:SL2.40ch08 gene_region:59630259-59635466 transcript_region:SL2.40ch08:59630259..59635466+ go_terms:GO:0005515 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 **-- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005515 NbS00013560g0007.1 protein AED:0.37 eAED:0.49 QI:256|1|0.66|1|0.5|0.66|3|0|121; (*TAIR) AT4G16566.1 (e_value=6e-30) | Symbols: HINT4 | histidine triad nucleotide-binding 4 | chr4:9334873-9335884 REVERSE LENGTH=146;; (*ITAG) Solyc08g007380.2.1 (e_value=8e-40) genomic_reference:SL2.40ch08 gene_region:1960528-1967459 transcript_region:SL2.40ch08:1960528..1967459+ go_terms:GO:0003824 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- B0KA64_THEP3); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003824 NbS00013560g0008.1 protein AED:0.29 eAED:0.35 QI:0|0|0|1|0|0|5|0|281; (*SWP) sp|P02376|RR19_TOBAC (e_value=9e-41) 30S ribosomal protein S19, chloroplastic OS=Nicotiana tabacum GN=rps19 PE=3 SV=3;; (*ITAG) ATCG00540.1 (e_value=2e-37) | Symbols: PETA | photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320;; (*ITAG) Solyc01g007380.1.1 (e_value=9e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1859332-1860294 transcript_region:SL2.40ch01:1859332..1860294+ go_terms:GO:0031361 functional_description:"Apocytochrome f (AHRD V1 ***- D3WBH0_9AQUA); contains Interpro domain(s) IPR002325 Cytochrome f "; GO:0031361 NbS00013560g0009.1 protein AED:0.39 eAED:0.55 QI:0|0|0|1|0|0|2|0|125; (*SWP) sp|Q33BZ3|RR3_NICTO (e_value=7e-49) 30S ribosomal protein S3, chloroplastic OS=Nicotiana tomentosiformis GN=rps3 PE=3 SV=1;; (*ITAG) ATCG00800.1 (e_value=2e-43) | Symbols: | structural constituent of ribosome | chrC:82826-83482 REVERSE LENGTH=218;; (*ITAG) Solyc01g007610.2.1 (e_value=7e-49) genomic_reference:SL2.40ch01 gene_region:1879619-1881527 transcript_region:SL2.40ch01:1879619..1881527- go_terms:GO:0005840,GO:0015934,GO:0015935,GO:0003723 functional_description:"30S ribosomal protein S3 chloroplastic (AHRD V1 ***- D3WBD9_9BORA); contains Interpro domain(s) IPR005704 Ribosomal protein S3, bacterial "; GO:0005840,GO:0015934,GO:0015935,GO:0003723 NbS00037349g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.25|0|0.8|0.25|0.2|5|0|429; (*TAIR) AT4G15240.1 (e_value=4e-97) | Symbols: | Protein of unknown function (DUF604) | chr4:8703518-8705378 REVERSE LENGTH=488;; (*ITAG) Solyc07g052630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58420121-58424359 transcript_region:SL2.40ch07:58420121..58424359+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00037349g0002.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|96; (*TAIR) AT4G15248.1 (e_value=5e-24) | Symbols: | B-box type zinc finger family protein | chr4:8708881-8709234 FORWARD LENGTH=117;; (*ITAG) Solyc07g052620.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58408926-58409318 transcript_region:SL2.40ch07:58408926..58409318- go_terms:GO:0005622 functional_description:"Zinc finger protein CONSTANS-LIKE 4 (AHRD V1 *-*- COL4_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00025265g0001.1 protein AED:0.06 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|564; (*TAIR) AT5G64430.1 (e_value=8e-79) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:25762540-25764081 REVERSE LENGTH=513;; (*ITAG) Solyc01g106320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86005942-86007808 transcript_region:SL2.40ch01:86005942..86007808- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7MPG4_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00049354g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.6|0.8|0.75|0.8|5|250|312; (*TAIR) AT4G37740.1 (e_value=1e-22) | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 | chr4:17725533-17727609 REVERSE LENGTH=535;; (*ITAG) Solyc08g005430.2.1 (e_value=6e-118) genomic_reference:SL2.40ch08 gene_region:317215-320529 transcript_region:SL2.40ch08:317215..320529+ go_terms:GO:0005634 functional_description:"Growth-regulating factor 4 (AHRD V1 **-- Q6ZIK5_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00049354g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|324; (*SWP) sp|Q84Y18|CXIP4_ARATH (e_value=5e-69) CAX-interacting protein 4 OS=Arabidopsis thaliana GN=CXIP4 PE=1 SV=2;; (*TAIR) AT2G28910.1 (e_value=4e-70) | Symbols: CXIP4 | CAX interacting protein 4 | chr2:12415992-12416990 REVERSE LENGTH=332;; (*ITAG) Solyc08g005450.1.1 (e_value=3e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:331751-332734 transcript_region:SL2.40ch08:331751..332734+ go_terms:GO:0008270 functional_description:"CAX-interacting protein 4 (AHRD V1 *--- CXIP4_ARATH); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00019087g0002.1 protein AED:0.40 eAED:0.62 QI:6|1|0|1|0|0.5|2|0|81; (*ITAG) Solyc12g007060.1.1 (e_value=5e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:1498752-1499498 transcript_region:SL2.40ch12:1498752..1499498- functional_description:"Unknown Protein (AHRD V1)"; NbS00057728g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|173|483; (*SWP) sp|O48780|KCS11_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=0.0) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc09g083050.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64116693-64119344 transcript_region:SL2.40ch09:64116693..64119344- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00050706g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|1|1|3|0|314; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=1e-28) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=4e-91) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc09g097890.2.1 (e_value=5e-161) genomic_reference:SL2.40ch09 gene_region:67160397-67162627 transcript_region:SL2.40ch09:67160397..67162627+ functional_description:"Membrane protein (AHRD V1 **-- B6ST21_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00050706g0009.1 protein AED:0.20 eAED:0.22 QI:199|0.66|0.46|1|0.58|0.61|13|0|968; (*SWP) sp|Q9Z321|TOP3B_MOUSE (e_value=0.0) DNA topoisomerase 3-beta-1 OS=Mus musculus GN=Top3b PE=2 SV=1;; (*TAIR) AT2G32000.1 (e_value=0.0) | Symbols: | DNA topoisomerase, type IA, core | chr2:13615999-13621563 REVERSE LENGTH=865;; (*ITAG) Solyc09g097880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67148650-67159633 transcript_region:SL2.40ch09:67148650..67159633+ go_terms:GO:0003917,GO:0005515 functional_description:"DNA topoisomerase (AHRD V1 **** B9RRL8_RICCO); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0003917,GO:0005515 NbS00050706g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|0|282; (*SWP) sp|Q9SIP0|RAA5D_ARATH (e_value=5e-97) Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=2 SV=1;; (*TAIR) AT2G31680.1 (e_value=4e-98) | Symbols: AtRABA5d, RABA5d | RAB GTPase homolog A5D | chr2:13473781-13474957 REVERSE LENGTH=219;; (*ITAG) Solyc09g097900.2.1 (e_value=8e-117) genomic_reference:SL2.40ch09 gene_region:67163971-67169072 transcript_region:SL2.40ch09:67163971..67169072- go_terms:GO:0005525 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525 NbS00044121g0004.1 protein AED:0.04 eAED:0.04 QI:2116|0.90|0.91|1|0.18|0|12|1930|282; (*ITAG) Solyc11g007900.1.1 (e_value=4e-135) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2123346-2132562 transcript_region:SL2.40ch11:2123346..2132562+ functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00044121g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0.85|1|1|1|7|217|859; (*TAIR) AT5G04460.3 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263695 FORWARD LENGTH=863;; (*ITAG) Solyc11g007910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00017122g0006.1 protein AED:0.33 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|204; (*SWP) sp|Q4UMH6|Y381_RICFE (e_value=4e-12) Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1;; (*TAIR) AT4G10720.1 (e_value=7e-46) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=445;; (*ITAG) Solyc06g074280.2.1 (e_value=4e-69) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00017122g0005.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0|3|0|192; (*ITAG) Solyc06g074280.2.1 (e_value=1e-12) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00060978g0002.1 protein AED:0.48 eAED:0.55 QI:0|0|0.5|1|1|0.5|2|73|95 NbS00036612g0102.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|147 NbS00032966g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|251; (*SWP) sp|Q9ZWA8|FLA9_ARATH (e_value=3e-59) Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana GN=FLA9 PE=1 SV=1;; (*TAIR) AT1G03870.1 (e_value=2e-60) | Symbols: FLA9 | FASCICLIN-like arabinoogalactan 9 | chr1:982625-983368 REVERSE LENGTH=247;; (*ITAG) Solyc07g053540.1.1 (e_value=8e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59285266-59286009 transcript_region:SL2.40ch07:59285266..59286009+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 4 (AHRD V1 ***- A9XTK9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00032966g0006.1 protein AED:0.29 eAED:0.35 QI:0|0|0|0.5|1|1|4|0|162; (*ITAG) Solyc01g059760.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00032966g0007.1 protein AED:0.15 eAED:0.62 QI:0|0|0.5|1|0|0.5|2|350|249 NbS00051559g0007.1 protein AED:0.08 eAED:0.10 QI:6|1|0.87|1|1|1|8|248|1255; (*SWP) sp|Q05609|CTR1_ARATH (e_value=2e-47) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G04700.1 (e_value=9e-175) | Symbols: | PB1 domain-containing protein tyrosine kinase | chr1:1316919-1320653 FORWARD LENGTH=1042;; (*ITAG) Solyc09g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66083794-66089563 transcript_region:SL2.40ch09:66083794..66089563+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7KE69_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00051559g0004.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|1|1|2|0|73 NbS00011136g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|171; (*SWP) sp|Q84K34|SIL10_ARATH (e_value=2e-15) E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1;; (*TAIR) AT5G37930.1 (e_value=2e-16) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr5:15102239-15103651 REVERSE LENGTH=349;; (*ITAG) Solyc03g034450.2.1 (e_value=8e-77) genomic_reference:SL2.40ch03 gene_region:10682892-10686321 transcript_region:SL2.40ch03:10682892..10686321+ go_terms:GO:0016567,GO:0005634,GO:0008270 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 ***- B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0016567,GO:0005634,GO:0008270 NbS00011136g0009.1 protein AED:0.13 eAED:0.13 QI:235|0.85|1|1|1|1|8|217|592; (*ITAG) Solyc03g043600.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:11064090-11069228 transcript_region:SL2.40ch03:11064090..11069228+ go_terms:GO:0016567,GO:0005634,GO:0008270 functional_description:"E3 ubiquitin-protein ligase SINA-like 10 (AHRD V1 *-*- SIL10_ARATH); contains Interpro domain(s) IPR018121 Seven in absentia protein, TRAF-like domain "; GO:0016567,GO:0005634,GO:0008270 NbS00011136g0007.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|136 NbS00011136g0010.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|86 NbS00018245g0004.1 protein AED:0.26 eAED:0.26 QI:340|0.89|0.95|1|0.73|0.65|20|804|460; (*SWP) sp|Q38813|DNAJ1_ARATH (e_value=3e-158) Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2;; (*TAIR) AT1G28210.1 (e_value=2e-159) | Symbols: ATJ1 | DNAJ heat shock family protein | chr1:9854598-9859884 FORWARD LENGTH=408;; (*ITAG) Solyc01g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73062943-73079541 transcript_region:SL2.40ch01:73062943..73079541- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TA99_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00018911g0019.1 protein AED:0.18 eAED:0.18 QI:0|0.85|0.5|1|0.57|0.37|8|0|1001; (*SWP) sp|P09122|DPO3X_BACSU (e_value=1e-42) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT4G24790.2 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:12778222-12781345 FORWARD LENGTH=857;; (*ITAG) Solyc03g111680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56369940-56375774 transcript_region:SL2.40ch03:56369940..56375774- go_terms:GO:0009360,GO:0017111,GO:0006260 functional_description:"DNA polymerase III gamma/tau subunit (AHRD V1 *-*- B0JGE9_MICAN); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0017111,GO:0006260 NbS00018911g0016.1 protein AED:0.28 eAED:0.35 QI:0|0|0|1|0|0.33|3|0|254; (*SWP) sp|Q01781|SAHH_PETCR (e_value=9e-102) Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2;; (*TAIR) AT4G13940.1 (e_value=4e-98) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485;; (*ITAG) Solyc09g092390.2.1 (e_value=2e-95) genomic_reference:SL2.40ch09 gene_region:66849458-66851791 transcript_region:SL2.40ch09:66849458..66851791+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0004013 NbS00018911g0001.1 protein AED:0.20 eAED:0.20 QI:191|0.85|0.8|1|0.85|0.8|15|577|636; (*SWP) sp|Q9STL8|UFSP_ARATH (e_value=0.0) Probable Ufm1-specific protease OS=Arabidopsis thaliana GN=At3g48380 PE=1 SV=2;; (*TAIR) AT3G48380.1 (e_value=0.0) | Symbols: | Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | chr3:17916468-17920099 FORWARD LENGTH=645;; (*ITAG) Solyc03g111660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56354498-56361332 transcript_region:SL2.40ch03:56354498..56361332+ functional_description:"Ufm1-specific protease 2 (AHRD V1 *-*- B9EMM1_SALSA); contains Interpro domain(s) IPR012462 Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 "; NbS00018911g0024.1 protein AED:0.18 eAED:0.22 QI:0|0.33|0|1|0|0.5|4|0|622; (*SWP) sp|Q9FGR7|PP426_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1;; (*TAIR) AT5G50280.1 (e_value=0.0) | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=723;; (*ITAG) Solyc03g111650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56347668-56350481 transcript_region:SL2.40ch03:56347668..56350481+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018911g0004.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|119 NbS00018911g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|90; (*SWP) sp|Q9FGR7|PP426_ARATH (e_value=8e-38) Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1;; (*TAIR) AT5G50280.1 (e_value=6e-39) | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=723;; (*ITAG) Solyc03g111650.2.1 (e_value=1e-43) genomic_reference:SL2.40ch03 gene_region:56347668-56350481 transcript_region:SL2.40ch03:56347668..56350481+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018911g0021.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|138; (*SWP) sp|P50246|SAHH_MEDSA (e_value=7e-82) Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1;; (*TAIR) AT4G13940.3 (e_value=6e-84) | Symbols: HOG1, SAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=440;; (*ITAG) Solyc09g092380.2.1 (e_value=6e-84) genomic_reference:SL2.40ch09 gene_region:66843541-66848047 transcript_region:SL2.40ch09:66843541..66848047+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0004013 NbS00019396g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|334; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc05g050580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59884633-59889227 transcript_region:SL2.40ch05:59884633..59889227+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00011002g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.5|0.66|1|1|6|376|514; (*SWP) sp|Q9LKA5|UMP1_ARATH (e_value=5e-53) Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1;; (*TAIR) AT3G06790.2 (e_value=1e-95) | Symbols: | plastid developmental protein DAG, putative | chr3:2144564-2145743 REVERSE LENGTH=244;; (*ITAG) Solyc01g066060.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:65398387-65402755 transcript_region:SL2.40ch01:65398387..65402755- go_terms:GO:0050897 functional_description:"DAG protein (AHRD V1 ***- B6UD77_MAIZE)"; GO:0050897 NbS00006751g0009.1 protein AED:0.33 eAED:0.34 QI:0|0.53|0.57|1|0.38|0.5|14|0|767; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT5G01950.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:365040-369532 REVERSE LENGTH=951;; (*ITAG) Solyc09g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:32511751-32522286 transcript_region:SL2.40ch09:32511751..32522286+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00006751g0003.1 protein AED:0.24 eAED:0.24 QI:79|1|0.5|1|0|0|2|0|352; (*TAIR) AT3G08640.1 (e_value=7e-121) | Symbols: | Protein of unknown function (DUF3411) | chr3:2622992-2624005 FORWARD LENGTH=337;; (*ITAG) Solyc09g031940.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:24424858-24425931 transcript_region:SL2.40ch09:24424858..24425931+ functional_description:"Chloroplast lumen common protein family-like protein (AHRD V1 ***- Q7F0B4_ORYSJ)"; NbS00006751g0108.1 protein AED:0.18 eAED:0.18 QI:0|1|0.85|1|1|1|7|0|282 NbS00006751g0109.1 protein AED:0.50 eAED:0.50 QI:16|0.33|0.28|0.85|0.5|0.42|7|0|175 NbS00011370g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|710; (*SWP) sp|Q9UT45|ENG1_SCHPO (e_value=6e-28) Endo-1,3(4)-beta-glucanase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng1 PE=2 SV=1;; (*TAIR) AT5G15870.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc02g089720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46036643-46038802 transcript_region:SL2.40ch02:46036643..46038802+ go_terms:GO:0016798 functional_description:"Endo-beta-1 3-glucanase (AHRD V1 ***- B5THH0_PNECA); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00011370g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|700; (*SWP) sp|Q09850|ENG2_SCHPO (e_value=1e-29) Putative endo-1,3(4)-beta-glucanase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=eng2 PE=2 SV=1;; (*TAIR) AT5G15870.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family 81 protein | chr5:5182641-5184878 REVERSE LENGTH=745;; (*ITAG) Solyc02g089730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46043034-46045142 transcript_region:SL2.40ch02:46043034..46045142+ go_terms:GO:0016798 functional_description:"Endo-1 3-beta-glucanase (AHRD V1 ***- C5FLR9_NANOT); contains Interpro domain(s) IPR005200 Glycoside hydrolase, family 81 "; GO:0016798 NbS00011370g0005.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.5|1|1|2|0|102 NbS00003368g0106.1 protein AED:0.07 eAED:0.10 QI:0|0|0|1|0|0|4|0|537 NbS00009594g0011.1 protein AED:0.08 eAED:0.08 QI:0|0.71|0.62|0.87|0.42|0.5|8|0|512; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=0.0) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G59030.1 (e_value=0.0) | Symbols: TT12, ATTT12 | MATE efflux family protein | chr3:21819124-21821288 FORWARD LENGTH=507;; (*ITAG) Solyc12g006360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:879277-882335 transcript_region:SL2.40ch12:879277..882335+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00009594g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|418; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=2e-63) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=2e-75) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g006330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:848908-850188 transcript_region:SL2.40ch12:848908..850188- go_terms:GO:0016747 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X7_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00009594g0010.1 protein AED:0.26 eAED:0.26 QI:468|0.77|0.7|1|1|1|10|426|417; (*SWP) sp|Q9SKX5|PAO2_ARATH (e_value=0.0) Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1;; (*TAIR) AT2G43020.1 (e_value=0.0) | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 | chr2:17891945-17894440 FORWARD LENGTH=490;; (*ITAG) Solyc12g006370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:882961-887464 transcript_region:SL2.40ch12:882961..887464- go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00001958g0002.1 protein AED:0.12 eAED:0.15 QI:191|0|0.5|1|0|0.5|2|0|355; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=4e-44) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT1G72220.1 (e_value=3e-45) | Symbols: | RING/U-box superfamily protein | chr1:27184388-27185629 REVERSE LENGTH=413;; (*ITAG) Solyc01g105620.2.1 (e_value=3e-118) genomic_reference:SL2.40ch01 gene_region:85491114-85492725 transcript_region:SL2.40ch01:85491114..85492725+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001958g0006.1 protein AED:0.06 eAED:0.06 QI:194|1|0.75|1|0|0|4|0|211; (*ITAG) Solyc01g105600.2.1 (e_value=6e-52) genomic_reference:SL2.40ch01 gene_region:85485997-85487705 transcript_region:SL2.40ch01:85485997..85487705- functional_description:"Unknown Protein (AHRD V1)"; NbS00038011g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|0.66|1|1|3|0|266; (*TAIR) AT3G51060.1 (e_value=1e-60) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc02g084680.2.1 (e_value=2e-87) genomic_reference:SL2.40ch02 gene_region:42356126-42358282 transcript_region:SL2.40ch02:42356126..42358282+ go_terms:GO:0003700,GO:0046982 functional_description:"Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; GO:0003700,GO:0046982 NbS00038011g0002.1 protein AED:0.37 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|117; (*ITAG) Solyc02g084680.2.1 (e_value=3e-31) genomic_reference:SL2.40ch02 gene_region:42356126-42358282 transcript_region:SL2.40ch02:42356126..42358282+ go_terms:GO:0003700,GO:0046982 functional_description:"Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; GO:0003700,GO:0046982 NbS00031373g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|0.66|1|1|3|0|130; (*SWP) sp|Q9LVC9|RLA32_ARATH (e_value=7e-27) 60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1;; (*TAIR) AT5G57290.3 (e_value=3e-28) | Symbols: | 60S acidic ribosomal protein family | chr5:23207049-23207835 REVERSE LENGTH=119;; (*ITAG) Solyc07g009330.2.1 (e_value=4e-37) genomic_reference:SL2.40ch07 gene_region:4378704-4380091 transcript_region:SL2.40ch07:4378704..4380091- go_terms:GO:0005840 functional_description:"60S acidic ribosomal protein P3 (AHRD V1 ***- B4G1B3_MAIZE); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00031373g0001.1 protein AED:0.33 eAED:0.35 QI:63|0.33|0.75|1|0|0.25|4|1092|97; (*TAIR) AT2G19080.1 (e_value=8e-30) | Symbols: | metaxin-related | chr2:8262818-8264746 FORWARD LENGTH=315;; (*ITAG) Solyc07g009320.2.1 (e_value=3e-51) genomic_reference:SL2.40ch07 gene_region:4363246-4373784 transcript_region:SL2.40ch07:4363246..4373784- go_terms:GO:0005515 functional_description:"Metaxin 2 (AHRD V1 ***- Q1KKR5_TAKRU); contains Interpro domain(s) IPR019564 Outer mitochondrial membrane transport complex protein, Tom37/Metaxin "; GO:0005515 NbS00033157g0003.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0|0.66|1|1|3|0|186; (*TAIR) AT1G80770.1 (e_value=1e-20) | Symbols: PDE318 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30355266-30357786 FORWARD LENGTH=451;; (*ITAG) Solyc09g090460.2.1 (e_value=3e-47) genomic_reference:SL2.40ch09 gene_region:65315562-65322903 transcript_region:SL2.40ch09:65315562..65322903+ go_terms:GO:0005525 functional_description:"GTPase obg (AHRD V1 *-*- OBG_ANATD); contains Interpro domain(s) IPR010674 Nucleolar GTP-binding 1 "; GO:0005525 NbS00051061g0001.1 protein AED:0.05 eAED:0.05 QI:52|-1|0|1|-1|0|1|0|62 NbS00052996g0005.1 protein AED:0.23 eAED:0.29 QI:0|0.33|0|1|0.66|0.5|4|0|456; (*TAIR) AT5G19090.3 (e_value=1e-24) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:6387910-6389855 FORWARD LENGTH=465;; (*ITAG) Solyc01g098760.2.1 (e_value=8e-45) genomic_reference:SL2.40ch01 gene_region:80961419-80963453 transcript_region:SL2.40ch01:80961419..80963453+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q2RAL3_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00009225g0005.1 protein AED:0.20 eAED:0.20 QI:268|1|1|1|0.66|0.5|4|796|160; (*SWP) sp|O65416|SKI27_ARATH (e_value=2e-28) F-box protein SKIP27 OS=Arabidopsis thaliana GN=SKIP27 PE=1 SV=2;; (*TAIR) AT4G21510.1 (e_value=2e-29) | Symbols: | F-box family protein | chr4:11446193-11447025 REVERSE LENGTH=225;; (*ITAG) Solyc03g006640.2.1 (e_value=8e-71) genomic_reference:SL2.40ch03 gene_region:1219448-1220536 transcript_region:SL2.40ch03:1219448..1220536+ functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00025918g0006.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|1|1|4|0|316; (*SWP) sp|P31237|ACCO_ACTDE (e_value=0.0) 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1;; (*TAIR) AT1G05010.1 (e_value=3e-166) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323;; (*ITAG) Solyc02g036350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21279767-21281954 transcript_region:SL2.40ch02:21279767..21281954+ go_terms:GO:0045431 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- A4ZYQ6_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00025918g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|775; (*TAIR) AT1G62390.1 (e_value=0.0) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g036360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21284150-21286435 transcript_region:SL2.40ch02:21284150..21286435- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT4_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003088g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|232; (*SWP) sp|Q54GN2|KTHY_DICDI (e_value=8e-49) Thymidylate kinase OS=Dictyostelium discoideum GN=dtymk PE=3 SV=1;; (*TAIR) AT5G59440.3 (e_value=9e-84) | Symbols: ZEU1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23971397-23972729 FORWARD LENGTH=271;; (*ITAG) Solyc07g048010.2.1 (e_value=2e-137) genomic_reference:SL2.40ch07 gene_region:56531812-56536127 transcript_region:SL2.40ch07:56531812..56536127- go_terms:GO:0004798 functional_description:"Thymidylate kinase family protein (AHRD V1 **** D7MSE9_ARALY); contains Interpro domain(s) IPR000062 Thymidylate kinase-like "; GO:0004798 NbS00003088g0001.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|401; (*TAIR) AT5G55530.2 (e_value=4e-101) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00003088g0002.1 protein AED:0.11 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|478; (*SWP) sp|Q920Q6|MSI2H_MOUSE (e_value=2e-55) RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1;; (*TAIR) AT3G07810.1 (e_value=5e-147) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc07g048030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56541879-56545444 transcript_region:SL2.40ch07:56541879..56545444+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00037135g0012.1 protein AED:0.15 eAED:0.15 QI:529|0.92|0.92|1|0.92|1|14|428|554; (*SWP) sp|Q9SE20|ZDS_SOLLC (e_value=0.0) Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1;; (*TAIR) AT3G04870.2 (e_value=0.0) | Symbols: ZDS, PDE181, SPC1 | zeta-carotene desaturase | chr3:1342842-1346189 FORWARD LENGTH=558;; (*ITAG) Solyc01g097810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80276527-80284534 transcript_region:SL2.40ch01:80276527..80284534- go_terms:GO:0055114 functional_description:"Zeta-carotene desaturase"; GO:0055114 NbS00037135g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|312; (*SWP) sp|Q05212|DR102_ARATH (e_value=2e-141) DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2;; (*TAIR) AT3G04880.1 (e_value=2e-142) | Symbols: DRT102 | DNA-damage-repair/toleration protein (DRT102) | chr3:1346431-1347363 REVERSE LENGTH=310;; (*ITAG) Solyc01g097800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80273351-80276200 transcript_region:SL2.40ch01:80273351..80276200+ go_terms:GO:0005975 functional_description:"Galactose-6-phosphate isomerase subunit lacB (AHRD V1 *-*- LACB_CLOAB); contains Interpro domain(s) IPR012100 DNA-damage-repair/toleration protein, DRT102 "; GO:0005975 NbS00037135g0011.1 protein AED:0.29 eAED:0.30 QI:0|0.86|0.83|1|0.60|0.54|24|465|954; (*SWP) sp|P93025|PHOT2_ARATH (e_value=0.0) Phototropin-2 OS=Arabidopsis thaliana GN=PHOT2 PE=1 SV=2;; (*TAIR) AT5G58140.1 (e_value=0.0) | Symbols: PHOT2, NPL1 | phototropin 2 | chr5:23524771-23529993 FORWARD LENGTH=915;; (*ITAG) Solyc01g097770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80240073-80252816 transcript_region:SL2.40ch01:80240073..80252816- go_terms:GO:0010181,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D2V878_NAEGR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0010181,GO:0004674 NbS00055754g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|0|2|0|261; (*SWP) sp|Q9FID6|Y5392_ARATH (e_value=6e-83) Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1;; (*TAIR) AT1G70250.1 (e_value=8e-87) | Symbols: | receptor serine/threonine kinase, putative | chr1:26452975-26456088 FORWARD LENGTH=799;; (*ITAG) Solyc04g007380.1.1 (e_value=5e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1076920-1078026 transcript_region:SL2.40ch04:1076920..1078026+ go_terms:GO:0004675 functional_description:"Receptor serine/threonine kinase-like protein (AHRD V1 **** O49728_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004675 NbS00055754g0010.1 protein AED:0.25 eAED:0.25 QI:514|1|0.90|1|1|0.90|11|0|408; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=0.0) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=0.0) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc04g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1065839-1072643 transcript_region:SL2.40ch04:1065839..1072643- go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00007211g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|122; (*SWP) sp|P92535|M1010_ARATH (e_value=9e-17) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*ITAG) ATMG01010.1 (e_value=7e-18) | Symbols: ORF118 | Unknown conserved protein | chrM:261105-261461 REVERSE LENGTH=118;; (*ITAG) Solyc11g056330.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00060534g0011.1 protein AED:0.23 eAED:0.23 QI:349|0.72|0.83|0.83|0.90|0.75|12|0|573; (*SWP) sp|P24859|SEC14_KLULA (e_value=2e-34) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G21520.1 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr2:9215956-9218953 FORWARD LENGTH=633;; (*ITAG) Solyc01g109870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88463446-88468885 transcript_region:SL2.40ch01:88463446..88468885- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T026_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00060534g0008.1 protein AED:0.05 eAED:0.06 QI:81|0.66|0.84|1|0.66|0.69|13|246|574; (*SWP) sp|P45816|SEC14_YARLI (e_value=8e-46) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G18180.1 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr2:7911054-7913695 REVERSE LENGTH=558;; (*ITAG) Solyc01g109860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88459612-88463165 transcript_region:SL2.40ch01:88459612..88463165+ go_terms:GO:0008526 functional_description:"Phosphatidylinositol/phosphatidylcholine transfer protein-like (AHRD V1 **-* Q9LRX7_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00036758g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.28|1|0.16|0.57|7|233|690; (*SWP) sp|Q09092|SRK6_BRAOE (e_value=8e-151) Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=2;; (*TAIR) AT1G11410.1 (e_value=6e-141) | Symbols: | S-locus lectin protein kinase family protein | chr1:3841286-3844284 FORWARD LENGTH=845;; (*ITAG) Solyc02g079590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38694213-38700089 transcript_region:SL2.40ch02:38694213..38700089+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00036758g0009.1 protein AED:0.31 eAED:0.31 QI:0|0.25|0.2|0.4|1|1|5|51|301 NbS00037521g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|92; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=7e-35) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT1G01390.1 (e_value=2e-32) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:148319-149761 REVERSE LENGTH=480;; (*ITAG) Solyc04g080010.2.1 (e_value=5e-52) genomic_reference:SL2.40ch04 gene_region:61901591-61903838 transcript_region:SL2.40ch04:61901591..61903838+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00037521g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|86; (*SWP) sp|Q40287|UFOG5_MANES (e_value=5e-13) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*ITAG) Solyc04g080010.2.1 (e_value=4e-34) genomic_reference:SL2.40ch04 gene_region:61901591-61903838 transcript_region:SL2.40ch04:61901591..61903838+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00020391g0003.1 protein AED:0.52 eAED:0.79 QI:0|0.25|0|0.8|0|0.2|5|0|113 NbS00005268g0010.1 protein AED:0.35 eAED:0.38 QI:48|1|1|1|0.57|0.75|8|161|201; (*TAIR) AT5G59210.2 (e_value=1e-60) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=433;; (*ITAG) Solyc09g055760.2.1 (e_value=5e-89) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00001679g0002.1 protein AED:0.44 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|103; (*SWP) sp|Q40191|RB11A_LOTJA (e_value=5e-47) Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1;; (*TAIR) AT5G65270.1 (e_value=7e-47) | Symbols: AtRABA4a, RABA4a | RAB GTPase homolog A4A | chr5:26083437-26084550 FORWARD LENGTH=226;; (*ITAG) Solyc11g010100.1.1 (e_value=1e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3222459-3224358 transcript_region:SL2.40ch11:3222459..3224358+ go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0007264,GO:0015031,GO:0005525,GO:0007165,GO:0005622 NbS00010437g0002.1 protein AED:0.29 eAED:0.29 QI:263|0.75|0.8|1|0.25|0.4|5|637|141; (*TAIR) AT2G39170.1 (e_value=8e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc11g008310.1.1 (e_value=4e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00038157g0006.1 protein AED:0.00 eAED:0.00 QI:241|1|1|1|1|1|2|103|304; (*TAIR) AT1G10380.1 (e_value=2e-102) | Symbols: | Putative membrane lipoprotein | chr1:3400706-3402110 FORWARD LENGTH=305;; (*ITAG) Solyc05g006700.2.1 (e_value=3e-165) genomic_reference:SL2.40ch05 gene_region:1366839-1367894 transcript_region:SL2.40ch05:1366839..1367894- functional_description:"Wall-associated receptor kinase-like 20 (AHRD V1 *--- WAKLQ_ARATH)"; NbS00038157g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|196; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=3e-63) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=2e-64) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g026210.1.1 (e_value=3e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40113650-40114827 transcript_region:SL2.40ch05:40113650..40114827- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 1 (AHRD V1 **** C8KH57_DIOKA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00021235g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0.5|1|1|1|2|1018|326; (*SWP) sp|Q9FGF8|ABR1_ARATH (e_value=6e-19) Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1;; (*TAIR) AT5G64750.1 (e_value=5e-20) | Symbols: ABR1 | Integrase-type DNA-binding superfamily protein | chr5:25891679-25893656 FORWARD LENGTH=391;; (*ITAG) Solyc04g051360.2.1 (e_value=2e-28) genomic_reference:SL2.40ch04 gene_region:49576579-49578019 transcript_region:SL2.40ch04:49576579..49578019+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00021235g0008.1 protein AED:0.39 eAED:0.40 QI:0|0.58|0.53|0.92|0.5|0.61|13|0|438; (*SWP) sp|Q54UJ0|PSD12_DICDI (e_value=2e-112) 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1;; (*TAIR) AT5G09900.2 (e_value=0.0) | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory subunit, putative (RPN5) | chr5:3089462-3092434 REVERSE LENGTH=442;; (*ITAG) Solyc04g051370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49587657-49596538 transcript_region:SL2.40ch04:49587657..49596538- go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515,GO:0004175 NbS00044565g0008.1 protein AED:0.11 eAED:0.12 QI:0|0.66|0.6|0.9|0.77|0.9|10|0|395; (*SWP) sp|P32746|PYRD_ARATH (e_value=0.0) Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2;; (*TAIR) AT5G23300.1 (e_value=0.0) | Symbols: PYRD | pyrimidine d | chr5:7847792-7850243 REVERSE LENGTH=460;; (*ITAG) Solyc01g008290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2396758-2404877 transcript_region:SL2.40ch01:2396758..2404877+ go_terms:GO:0016020,GO:0008152,GO:0055114 functional_description:"Dihydroorotate dehydrogenase (AHRD V1 ***- B6U892_MAIZE); contains Interpro domain(s) IPR005719 Dihydroorotate dehydrogenase, class 2 "; GO:0016020,GO:0008152,GO:0055114 NbS00044565g0007.1 protein AED:0.41 eAED:0.67 QI:3|1|0|1|0|0.5|2|0|80 NbS00031071g0005.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|1|1|3|0|149; (*TAIR) AT5G54530.1 (e_value=5e-62) | Symbols: | Protein of unknown function, DUF538 | chr5:22152781-22154201 FORWARD LENGTH=161;; (*ITAG) Solyc07g063860.2.1 (e_value=1e-86) genomic_reference:SL2.40ch07 gene_region:63449867-63450950 transcript_region:SL2.40ch07:63449867..63450950+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00027577g0010.1 protein AED:0.33 eAED:0.33 QI:253|0.9|0.81|1|0.8|0.81|11|0|639; (*SWP) sp|Q8VYJ1|MENE_ARATH (e_value=0.0) 2-succinylbenzoate--CoA ligase, chloroplastic/peroxisomal OS=Arabidopsis thaliana GN=AAE14 PE=1 SV=1;; (*TAIR) AT1G30520.1 (e_value=0.0) | Symbols: AAE14 | acyl-activating enzyme 14 | chr1:10811039-10813546 FORWARD LENGTH=560;; (*ITAG) Solyc02g069920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34281465-34286083 transcript_region:SL2.40ch02:34281465..34286083+ go_terms:GO:0008756,GO:0004467 functional_description:"Long-chain-fatty-acid CoA ligase (AHRD V1 **** A4A722_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008756,GO:0004467 NbS00027577g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|0.33|0|4|381|820; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=0.0) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*TAIR) AT2G34730.2 (e_value=8e-84) | Symbols: | myosin heavy chain-related | chr2:14654611-14657443 FORWARD LENGTH=825;; (*ITAG) Solyc02g069940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34291571-34298923 transcript_region:SL2.40ch02:34291571..34298923- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00027577g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|319; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=2e-27) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT5G14980.1 (e_value=1e-113) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:4849600-4850583 FORWARD LENGTH=327;; (*ITAG) Solyc02g069930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34286456-34287415 transcript_region:SL2.40ch02:34286456..34287415- go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00027577g0008.1 protein AED:0.50 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc02g069940.2.1 (e_value=1e-16) genomic_reference:SL2.40ch02 gene_region:34291571-34298923 transcript_region:SL2.40ch02:34291571..34298923- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00027577g0011.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|148; (*ITAG) Solyc02g069910.1.1 (e_value=5e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34275319-34275639 transcript_region:SL2.40ch02:34275319..34275639- functional_description:"Unknown Protein (AHRD V1)"; NbS00015185g0007.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|134 NbS00015185g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|0.87|0.88|9|0|467; (*TAIR) AT3G48500.1 (e_value=0.0) | Symbols: PDE312, PTAC10 | Nucleic acid-binding, OB-fold-like protein | chr3:17962209-17965408 FORWARD LENGTH=668;; (*ITAG) Solyc03g111050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55775851-55786202 transcript_region:SL2.40ch03:55775851..55786202+ go_terms:GO:0003723 functional_description:"Plastid RNA-binding protein (AHRD V1 **-- D6QX33_NICBE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00015185g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.62|1|1|1|8|0|551; (*TAIR) AT5G50350.1 (e_value=2e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20498697-20501611 REVERSE LENGTH=584;; (*ITAG) Solyc03g111030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55765683-55771579 transcript_region:SL2.40ch03:55765683..55771579+ functional_description:"Genomic DNA chromosome 5 P1 clone MXI22 (AHRD V1 ***- Q9FK37_ARATH)"; NbS00015185g0012.1 protein AED:0.29 eAED:0.30 QI:0|0.33|0.14|1|0.66|0.57|7|0|209; (*SWP) sp|Q9LRB5|LHT2_ARATH (e_value=2e-66) Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1;; (*TAIR) AT1G24400.1 (e_value=1e-67) | Symbols: LHT2, AATL2, ATLHT2 | lysine histidine transporter 2 | chr1:8651563-8653561 REVERSE LENGTH=441;; (*ITAG) Solyc03g111040.1.1 (e_value=5e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55771884-55774232 transcript_region:SL2.40ch03:55771884..55774232- go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00015185g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|133; (*SWP) sp|Q9SR44|LHTL2_ARATH (e_value=9e-52) Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1;; (*TAIR) AT1G67640.1 (e_value=7e-53) | Symbols: | Transmembrane amino acid transporter family protein | chr1:25352128-25353908 REVERSE LENGTH=441;; (*ITAG) Solyc03g111040.1.1 (e_value=2e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55771884-55774232 transcript_region:SL2.40ch03:55771884..55774232- go_terms:GO:0015175,GO:0015172 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbC25401240g0002.1 protein AED:0.06 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|85; (*SWP) sp|Q84L08|GONS4_ARATH (e_value=3e-34) GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1;; (*TAIR) AT5G19980.1 (e_value=2e-35) | Symbols: GONST4 | golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341;; (*ITAG) Solyc09g065600.2.1 (e_value=3e-22) genomic_reference:SL2.40ch09 gene_region:59349686-59357196 transcript_region:SL2.40ch09:59349686..59357196- functional_description:"Sugar nucleotide transporter-like protein (Fragment) (AHRD V1 *--- A8J1R9_CHLRE)"; NbS00021192g0008.1 protein AED:0.12 eAED:0.12 QI:1079|0.83|0.85|1|0.66|0.71|7|302|235; (*SWP) sp|Q5TZ51|MPV17_DANRE (e_value=1e-28) Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1;; (*TAIR) AT5G19750.1 (e_value=8e-86) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:6677124-6679127 FORWARD LENGTH=288;; (*ITAG) Solyc03g098640.2.1 (e_value=8e-108) genomic_reference:SL2.40ch03 gene_region:54390977-54396463 transcript_region:SL2.40ch03:54390977..54396463+ go_terms:GO:0009401,GO:0016021 functional_description:"Mpv17 protein (AHRD V1 *--- Q178F4_AEDAE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0009401,GO:0016021 NbS00021192g0007.1 protein AED:0.28 eAED:0.28 QI:11|1|0.75|1|1|1|4|196|257; (*SWP) sp|Q9FTA0|GEML4_ARATH (e_value=4e-56) GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1;; (*TAIR) AT5G08350.1 (e_value=3e-57) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:2686417-2687175 REVERSE LENGTH=222;; (*ITAG) Solyc03g098660.2.1 (e_value=1e-134) genomic_reference:SL2.40ch03 gene_region:54407060-54408908 transcript_region:SL2.40ch03:54407060..54408908+ functional_description:"FIP1 (AHRD V1 **-- B6TFD3_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00059713g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.6|1|0.5|0.8|5|383|461; (*SWP) sp|Q8VZ59|YUC6_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA6 OS=Arabidopsis thaliana GN=YUC6 PE=2 SV=1;; (*TAIR) AT5G25620.1 (e_value=0.0) | Symbols: YUC6 | Flavin-binding monooxygenase family protein | chr5:8935520-8938224 REVERSE LENGTH=417;; (*ITAG) Solyc08g068160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54471769-54474827 transcript_region:SL2.40ch08:54471769..54474827- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00002162g0004.1 protein AED:0.19 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|133 NbS00050080g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.71|0.75|0.87|1|1|8|295|439; (*SWP) sp|Q0WNR2|BH090_ARATH (e_value=3e-50) Transcription factor bHLH90 OS=Arabidopsis thaliana GN=BHLH90 PE=2 SV=1;; (*TAIR) AT1G10610.1 (e_value=2e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3506463-3508752 FORWARD LENGTH=441;; (*ITAG) Solyc05g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:240253-242750 transcript_region:SL2.40ch05:240253..242750- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 ***- Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00007534g0005.1 protein AED:0.12 eAED:0.12 QI:134|1|1|1|1|1|2|254|253; (*SWP) sp|Q41350|OLP1_SOLLC (e_value=2e-152) Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT2G28790.1 (e_value=2e-128) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr2:12354664-12355413 REVERSE LENGTH=249;; (*ITAG) Solyc11g066130.1.1 (e_value=1e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48890355-48891113 transcript_region:SL2.40ch11:48890355..48891113+ functional_description:"Thaumatin-like protein (AHRD V1 **-- D2KU75_CITJA); contains Interpro domain(s) IPR017949 Thaumatin, conserved site IPR001938 Thaumatin, pathogenesis-related "; NbS00006531g0014.1 protein AED:0.13 eAED:0.22 QI:59|0.6|0.66|1|0.6|0.5|6|121|201; (*TAIR) AT1G03055.1 (e_value=7e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 143 Blast hits to 143 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:710102-711763 REVERSE LENGTH=264;; (*ITAG) Solyc09g065750.2.1 (e_value=4e-85) genomic_reference:SL2.40ch09 gene_region:59623251-59628604 transcript_region:SL2.40ch09:59623251..59628604- functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)"; NbS00006531g0010.1 protein AED:0.34 eAED:0.34 QI:133|1|1|1|0.33|0|4|417|140; (*SWP) sp|Q84MP7|H2AV3_ORYSJ (e_value=1e-72) Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1;; (*TAIR) AT2G38810.2 (e_value=2e-71) | Symbols: HTA8 | histone H2A 8 | chr2:16219444-16220679 REVERSE LENGTH=136;; (*ITAG) Solyc06g084090.2.1 (e_value=8e-73) genomic_reference:SL2.40ch06 gene_region:45626067-45629099 transcript_region:SL2.40ch06:45626067..45629099+ go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 *-*- C5XX54_SORBI); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00006531g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|414; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=2e-167) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=2e-151) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc09g065740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59619493-59622604 transcript_region:SL2.40ch09:59619493..59622604+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00005272g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|230; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=7e-87) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=5e-88) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g026210.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40113650-40114827 transcript_region:SL2.40ch05:40113650..40114827- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 1 (AHRD V1 **** C8KH57_DIOKA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00046853g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0.92|1|0.91|0.92|13|296|544; (*TAIR) AT2G40820.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:17036768-17039474 REVERSE LENGTH=492;; (*ITAG) Solyc10g078340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59482438-59487279 transcript_region:SL2.40ch10:59482438..59487279- functional_description:"Os03g0364500 protein (Fragment) (AHRD V1 *-*- Q0DRQ2_ORYSJ)"; NbS00054211g0002.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|80; (*SWP) sp|Q9SRV3|LBD20_ARATH (e_value=8e-17) LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1;; (*TAIR) AT3G03760.1 (e_value=6e-18) | Symbols: LBD20 | LOB domain-containing protein 20 | chr3:943632-944673 FORWARD LENGTH=273;; (*ITAG) Solyc01g091420.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76810419-76814829 transcript_region:SL2.40ch01:76810419..76814829+ functional_description:"LOB domain protein 30 (AHRD V1 ***- D7M5R6_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00007576g0011.1 protein AED:0.15 eAED:0.15 QI:183|1|1|1|0.82|0.88|18|270|522; (*SWP) sp|Q94BR4|PR19A_ARATH (e_value=0.0) Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1;; (*TAIR) AT1G04510.1 (e_value=0.0) | Symbols: MAC3A | MOS4-associated complex 3A | chr1:1226749-1230592 FORWARD LENGTH=523;; (*ITAG) Solyc09g090660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65460983-65469080 transcript_region:SL2.40ch09:65460983..65469080+ go_terms:GO:0042802 functional_description:"Guanine nucleotide-binding protein subunit beta-like protein (AHRD V1 *--* GBLP_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042802 NbS00007576g0009.1 protein AED:0.30 eAED:0.31 QI:79|1|0.5|1|1|1|2|0|160; (*SWP) sp|P17642|PRS2_SOLTU (e_value=7e-64) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*ITAG) Solyc12g096960.1.1 (e_value=3e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64005405-64006610 transcript_region:SL2.40ch12:64005405..64006610+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1.0502 (AHRD V1 ***- Q4VPK6_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00007576g0007.1 protein AED:0.10 eAED:0.10 QI:257|1|1|1|0.85|0.87|8|150|320; (*SWP) sp|Q8N573|OXR1_HUMAN (e_value=7e-23) Oxidation resistance protein 1 OS=Homo sapiens GN=OXR1 PE=1 SV=2;; (*TAIR) AT2G05590.2 (e_value=1e-82) | Symbols: | TLD-domain containing nucleolar protein | chr2:2067196-2068951 FORWARD LENGTH=303;; (*ITAG) Solyc12g096950.1.1 (e_value=3e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63999637-64003165 transcript_region:SL2.40ch12:63999637..64003165- functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00005266g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|3|0|398; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=8e-46) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G66910.1 (e_value=3e-49) | Symbols: | Protein kinase superfamily protein | chr1:24961634-24963941 REVERSE LENGTH=666;; (*ITAG) Solyc02g081500.2.1 (e_value=1e-70) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005266g0004.1 protein AED:0.44 eAED:0.60 QI:0|-1|0|1|-1|1|1|0|140; (*TAIR) AT1G70250.1 (e_value=4e-15) | Symbols: | receptor serine/threonine kinase, putative | chr1:26452975-26456088 FORWARD LENGTH=799;; (*ITAG) Solyc02g081500.2.1 (e_value=7e-33) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005266g0006.1 protein AED:0.30 eAED:0.31 QI:541|0.71|0.87|1|0|0.12|8|762|274; (*ITAG) Solyc03g083480.2.1 (e_value=3e-32) genomic_reference:SL2.40ch03 gene_region:46907988-46909219 transcript_region:SL2.40ch03:46907988..46909219+ functional_description:"Receptor-like kinase (AHRD V1 *-*- Q9LL53_ORYSA)"; NbS00005266g0010.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|249; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=1e-68) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=2e-75) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc01g008500.2.1 (e_value=3e-142) genomic_reference:SL2.40ch01 gene_region:2608681-2614375 transcript_region:SL2.40ch01:2608681..2614375+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005266g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|111; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=2e-30) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=5e-36) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc01g008500.2.1 (e_value=3e-67) genomic_reference:SL2.40ch01 gene_region:2608681-2614375 transcript_region:SL2.40ch01:2608681..2614375+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor serine/threonine kinase (AHRD V1 **** O49202_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00005266g0017.1 protein AED:0.47 eAED:0.62 QI:202|0.2|0.33|0.83|0.8|0.66|6|0|114 NbS00005266g0002.1 protein AED:0.30 eAED:0.66 QI:0|1|0.5|1|0|0|2|533|286; (*ITAG) Solyc03g083480.2.1 (e_value=3e-38) genomic_reference:SL2.40ch03 gene_region:46907988-46909219 transcript_region:SL2.40ch03:46907988..46909219+ functional_description:"Receptor-like kinase (AHRD V1 *-*- Q9LL53_ORYSA)"; NbS00000600g0010.1 protein AED:0.20 eAED:0.20 QI:213|1|1|1|1|1|2|155|257; (*SWP) sp|Q9STF9|PP266_ARATH (e_value=1e-17) Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1;; (*TAIR) AT5G09320.1 (e_value=6e-63) | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9) domain | chr5:2889007-2892016 REVERSE LENGTH=712;; (*ITAG) Solyc10g074600.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57474448-57476031 transcript_region:SL2.40ch10:57474448..57476031- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIM4_ARALY)"; NbS00000600g0013.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0.2|1|0.75|0.8|5|0|567; (*SWP) sp|Q9SZL9|CSLD4_ARATH (e_value=0.0) Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1;; (*TAIR) AT4G38190.1 (e_value=0.0) | Symbols: ATCSLD4, CSLD4 | cellulose synthase like D4 | chr4:17910096-17913641 REVERSE LENGTH=1111;; (*ITAG) Solyc10g074620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57489208-57495102 transcript_region:SL2.40ch10:57489208..57495102+ go_terms:GO:0016020 functional_description:"Cellulose synthase D-like protein (AHRD V1 ***- Q93XQ0_NICAL); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00000600g0012.1 protein AED:0.31 eAED:0.34 QI:0|0.25|0|1|0.25|0.2|5|0|482; (*SWP) sp|Q9SZL9|CSLD4_ARATH (e_value=0.0) Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1;; (*TAIR) AT4G38190.1 (e_value=0.0) | Symbols: ATCSLD4, CSLD4 | cellulose synthase like D4 | chr4:17910096-17913641 REVERSE LENGTH=1111;; (*ITAG) Solyc10g074620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57489208-57495102 transcript_region:SL2.40ch10:57489208..57495102+ go_terms:GO:0016020 functional_description:"Cellulose synthase D-like protein (AHRD V1 ***- Q93XQ0_NICAL); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020 NbS00000600g0015.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|85; (*SWP) sp|Q949P3|Y2734_ARATH (e_value=6e-37) Uncharacterized protein At2g17340 OS=Arabidopsis thaliana GN=At2g17340 PE=1 SV=1;; (*TAIR) AT2G17340.1 (e_value=4e-38) | Symbols: | Uncharacterised conserved protein (UCP030210) | chr2:7541615-7544089 REVERSE LENGTH=367;; (*ITAG) Solyc01g112270.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:90101829-90105141 transcript_region:SL2.40ch01:90101829..90105141- functional_description:"DUF89 family protein (Fragment) (AHRD V1 *--- D9I7Y9_ENSVE); contains Interpro domain(s) IPR002791 Domain of unknown function DUF89 "; NbS00016257g0004.1 protein AED:0.26 eAED:0.27 QI:129|0|0.5|1|0|0.5|2|0|198; (*SWP) sp|Q8LC69|ATL8_ARATH (e_value=2e-45) RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2;; (*TAIR) AT1G76410.1 (e_value=2e-46) | Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185;; (*ITAG) Solyc02g082420.2.1 (e_value=3e-83) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016257g0011.1 protein AED:0.31 eAED:0.31 QI:309|1|0.93|1|0.85|0.93|15|0|554; (*SWP) sp|O22757|MLO8_ARATH (e_value=0.0) MLO-like protein 8 OS=Arabidopsis thaliana GN=MLO8 PE=2 SV=2;; (*TAIR) AT2G17480.1 (e_value=0.0) | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO family protein | chr2:7590559-7593768 REVERSE LENGTH=593;; (*ITAG) Solyc02g082430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40694608-40700995 transcript_region:SL2.40ch02:40694608..40700995- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00016257g0014.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|244; (*SWP) sp|Q8LC69|ATL8_ARATH (e_value=1e-42) RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2;; (*TAIR) AT1G76410.1 (e_value=1e-43) | Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185;; (*ITAG) Solyc02g082420.2.1 (e_value=1e-79) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00016257g0106.1 protein AED:0.00 eAED:0.00 QI:122|1|1|1|0.8|0.66|6|453|722 NbS00055315g0005.1 protein AED:0.27 eAED:0.27 QI:205|0.73|0.7|1|0.63|0.75|20|0|957; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=0.0) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT5G49760.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20216679-20221052 FORWARD LENGTH=953;; (*ITAG) Solyc01g102680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83176089-83185689 transcript_region:SL2.40ch01:83176089..83185689+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00002152g0007.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0.5|0.66|3|0|208; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=2e-94) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT4G31700.1 (e_value=2e-93) | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4:15346306-15347714 REVERSE LENGTH=250;; (*ITAG) Solyc08g074240.2.1 (e_value=2e-101) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00002152g0006.1 protein AED:0.32 eAED:0.33 QI:0|0.71|0.62|1|0.57|0.37|8|1096|747; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=2e-138) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.2 (e_value=3e-140) | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615894 FORWARD LENGTH=588;; (*ITAG) Solyc08g005270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:192513-198421 transcript_region:SL2.40ch08:192513..198421- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00009582g0006.1 protein AED:0.19 eAED:0.19 QI:0|0|0.33|0.66|0.5|0.33|3|0|474; (*TAIR) AT4G23490.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr4:12251580-12253973 REVERSE LENGTH=526;; (*ITAG) Solyc12g056200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47513359-47516205 transcript_region:SL2.40ch12:47513359..47516205+ functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00009582g0204.1 protein AED:0.32 eAED:0.36 QI:0|0.5|0|1|1|1|3|0|77 NbS00039817g0002.1 protein AED:0.52 eAED:0.56 QI:0|0|0|1|1|1|2|0|92 NbS00039817g0001.1 protein AED:0.11 eAED:0.11 QI:458|1|0.71|1|0.66|0.57|7|0|586; (*TAIR) AT5G45030.2 (e_value=0.0) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607;; (*ITAG) Solyc02g068910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33372930-33380165 transcript_region:SL2.40ch02:33372930..33380165+ go_terms:GO:0003824 functional_description:"Peptidase trypsin-like serine and cysteine proteases (Fragment) (AHRD V1 ***- A2Q138_MEDTR); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00007247g0010.1 protein AED:0.11 eAED:0.11 QI:226|0.85|0.75|1|0.85|0.87|8|0|311; (*SWP) sp|Q39635|Y38K_CORSE (e_value=3e-138) Uncharacterized 38.1 kDa protein OS=Corydalis sempervirens PE=2 SV=1;; (*TAIR) AT2G40410.2 (e_value=2e-146) | Symbols: | Staphylococcal nuclease homologue | chr2:16873509-16875215 FORWARD LENGTH=332;; (*ITAG) Solyc06g050720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29980646-29982486 transcript_region:SL2.40ch06:29980646..29982486+ go_terms:GO:0004518 functional_description:"Nuclease (AHRD V1 **** B6STR9_MAIZE); contains Interpro domain(s) IPR006021 Staphylococcal nuclease (SNase-like) "; GO:0004518 NbS00007247g0002.1 protein AED:0.41 eAED:0.41 QI:0|1|0.66|1|1|1|3|0|175; (*TAIR) AT5G05360.1 (e_value=2e-46) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:1588356-1589178 FORWARD LENGTH=163;; (*ITAG) Solyc06g050730.2.1 (e_value=8e-92) genomic_reference:SL2.40ch06 gene_region:29994029-29995792 transcript_region:SL2.40ch06:29994029..29995792- functional_description:"Genomic DNA chromosome 5 TAC clone K18I23 (AHRD V1 *-*- Q9FLB8_ARATH); contains Interpro domain(s) IPR006597 Sel1-like "; NbS00005476g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.66|0.5|0.75|1|0.75|4|0|485; (*TAIR) AT2G36420.1 (e_value=1e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03670.1); Has 10588 Blast hits to 6606 proteins in 440 species: Archae - 8; Bacteria - 365; Metazoa - 4146; Fungi - 1198; Plants - 483; Viruses - 212; Other Eukaryotes - 4176 (source: NCBI BLink). | chr2:15286498-15288990 FORWARD LENGTH=439;; (*ITAG) Solyc09g009220.2.1 (e_value=6e-166) genomic_reference:SL2.40ch09 gene_region:2593727-2598249 transcript_region:SL2.40ch09:2593727..2598249- functional_description:"Unknown Protein (AHRD V1)"; NbS00046264g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|243; (*SWP) sp|Q84JS6|KNAT6_ARATH (e_value=1e-45) Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1;; (*TAIR) AT1G23380.1 (e_value=7e-47) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc05g005090.2.1 (e_value=8e-55) genomic_reference:SL2.40ch05 gene_region:87082-93883 transcript_region:SL2.40ch05:87082..93883- go_terms:GO:0005515 functional_description:"Knotted-1-like homeobox protein H1 (AHRD V1 ***- Q8GUS6_TOBAC); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00009883g0011.1 protein AED:0.26 eAED:0.32 QI:0|0.33|0|1|0.33|0|4|0|194; (*ITAG) Solyc10g049530.1.1 (e_value=6e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00009883g0010.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|0|0|2|0|251; (*SWP) sp|Q7F8R0|C3H14_ORYSJ (e_value=1e-92) Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=9e-60) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc10g078750.1.1 (e_value=9e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59800183-59803268 transcript_region:SL2.40ch10:59800183..59803268+ go_terms:GO:0003723,GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723,GO:0008270 NbS00007076g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.25|1|0.66|0.5|4|0|293; (*SWP) sp|Q9SHU7|TIC21_ARATH (e_value=2e-92) Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1;; (*TAIR) AT2G15290.1 (e_value=1e-93) | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon at inner membrane of chloroplasts 21 | chr2:6642512-6644011 REVERSE LENGTH=296;; (*ITAG) Solyc01g107640.2.1 (e_value=1e-131) genomic_reference:SL2.40ch01 gene_region:86881312-86885702 transcript_region:SL2.40ch01:86881312..86885702- go_terms:GO:0042803,GO:0015088,GO:0005381 functional_description:"Tic21 (AHRD V1 **-- Q09S70_PEA)"; GO:0042803,GO:0015088,GO:0005381 NbS00031086g0013.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|0.5|2|0|192; (*TAIR) AT3G01160.1 (e_value=5e-23) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | chr3:54655-57449 REVERSE LENGTH=713;; (*ITAG) Solyc02g083470.2.1 (e_value=7e-68) genomic_reference:SL2.40ch02 gene_region:41440829-41445430 transcript_region:SL2.40ch02:41440829..41445430- functional_description:"Pre-rRNA-processing protein ESF1 (AHRD V1 *-*- C5FM19_NANOT)"; NbS00031086g0011.1 protein AED:0.11 eAED:0.11 QI:291|0.9|1|1|0.7|0.63|11|253|508; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=2e-68) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT4G35880.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr4:16993339-16995721 FORWARD LENGTH=524;; (*ITAG) Solyc02g083450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41427643-41433090 transcript_region:SL2.40ch02:41427643..41433090+ go_terms:GO:0006508 functional_description:"Aspartic proteinase-like protein 1 (AHRD V1 **-- ASPL1_ARATH); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00031086g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.7|1|1|1|10|219|543; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=1e-81) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT2G17760.1 (e_value=2e-169) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:7713488-7716269 FORWARD LENGTH=513;; (*ITAG) Solyc02g083460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41436441-41440462 transcript_region:SL2.40ch02:41436441..41440462+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LAA8_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00031086g0012.1 protein AED:0.20 eAED:0.65 QI:116|0|0.5|1|0|0|2|0|85 NbS00055943g0003.1 protein AED:0.25 eAED:0.25 QI:72|0.86|0.93|0.93|0.93|0.93|16|392|478; (*SWP) sp|B3H6K1|Y4791_ARATH (e_value=1e-114) Uncharacterized protein At4g17910 OS=Arabidopsis thaliana GN=At4g17910 PE=2 SV=2;; (*TAIR) AT4G17910.1 (e_value=9e-116) | Symbols: | transferases, transferring acyl groups | chr4:9951322-9953689 REVERSE LENGTH=434;; (*ITAG) Solyc08g076810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57876899-57889537 transcript_region:SL2.40ch08:57876899..57889537+ go_terms:GO:0005515,GO:0032216 functional_description:"GPI-anchored wall transfer protein 1 (AHRD V1 ***- C4JY68_UNCRE); contains Interpro domain(s) IPR009447 GWT1 "; GO:0005515,GO:0032216 NbS00009323g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.8|1|0.25|0.6|5|307|157; (*SWP) sp|Q9LD45|BI1_ARATH (e_value=5e-46) Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1;; (*TAIR) AT5G47120.1 (e_value=3e-47) | Symbols: ATBI-1, BI-1, ATBI1, BI1 | BAX inhibitor 1 | chr5:19136071-19137585 FORWARD LENGTH=247;; (*ITAG) Solyc08g077980.2.1 (e_value=1e-64) genomic_reference:SL2.40ch08 gene_region:59033727-59036658 transcript_region:SL2.40ch08:59033727..59036658- go_terms:GO:0005515 functional_description:"Bax inhibitor (AHRD V1 ***- Q6U1L7_SOLLC); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005515 NbS00009323g0007.1 protein AED:0.32 eAED:0.33 QI:282|1|0.66|1|1|1|3|0|152; (*TAIR) AT4G17010.1 (e_value=9e-38) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9576442-9577627 FORWARD LENGTH=160;; (*ITAG) Solyc08g077970.2.1 (e_value=2e-73) genomic_reference:SL2.40ch08 gene_region:59030320-59033426 transcript_region:SL2.40ch08:59030320..59033426- functional_description:"Unknown Protein (AHRD V1)"; NbS00004528g0005.1 protein AED:0.24 eAED:0.24 QI:377|1|0.85|1|0.66|0.57|7|0|499; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=2e-20) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT1G34220.2 (e_value=1e-119) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:12463102-12465911 REVERSE LENGTH=619;; (*ITAG) Solyc04g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57131447-57136751 transcript_region:SL2.40ch04:57131447..57136751+ functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00004528g0008.1 protein AED:0.17 eAED:0.17 QI:149|0.9|0.81|1|0.9|0.90|11|276|578; (*SWP) sp|Q9XIC7|SERK2_ARATH (e_value=0.0) Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1;; (*TAIR) AT1G34210.1 (e_value=0.0) | Symbols: SERK2, ATSERK2 | somatic embryogenesis receptor-like kinase 2 | chr1:12459078-12462752 FORWARD LENGTH=628;; (*ITAG) Solyc04g072570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57137144-57143849 transcript_region:SL2.40ch04:57137144..57143849- go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00031670g0004.1 protein AED:0.23 eAED:0.26 QI:27|0|0|1|1|1|2|0|187; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=3e-17) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*ITAG) Solyc11g007490.1.1 (e_value=8e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1761848-1763179 transcript_region:SL2.40ch11:1761848..1763179- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00037260g0001.1 protein AED:0.00 eAED:0.15 QI:161|0|0.5|1|0|0.5|2|673|177; (*TAIR) AT4G32020.1 (e_value=1e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15488076-15488621 FORWARD LENGTH=181;; (*ITAG) Solyc08g041860.1.1 (e_value=1e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:27461999-27462499 transcript_region:SL2.40ch08:27461999..27462499- functional_description:"Unknown Protein (AHRD V1)"; NbS00037260g0013.1 protein AED:0.21 eAED:0.21 QI:317|0|0.2|0.6|1|0.8|5|0|234 NbS00037260g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|122; (*SWP) sp|Q8BH24|TM9S4_MOUSE (e_value=4e-13) Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT5G35160.2 (e_value=3e-35) | Symbols: | Endomembrane protein 70 protein family | chr5:13414945-13416921 FORWARD LENGTH=658;; (*ITAG) Solyc12g010390.1.1 (e_value=6e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3440122-3442095 transcript_region:SL2.40ch12:3440122..3442095- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 2 (AHRD V1 **** B6ST61_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00006880g0005.1 protein AED:0.06 eAED:0.06 QI:130|0.8|0.83|1|0.4|0.16|6|60|570; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=0.0) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc11g042820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34285328-34288774 transcript_region:SL2.40ch11:34285328..34288774- go_terms:GO:0016020 functional_description:"Nitrate transporter (AHRD V1 ***- Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00015004g0012.1 protein AED:0.06 eAED:0.06 QI:644|0.66|0.75|1|0.66|0.5|4|516|339; (*TAIR) AT1G32740.1 (e_value=4e-61) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:11844883-11846082 FORWARD LENGTH=312;; (*ITAG) Solyc06g061020.2.1 (e_value=2e-133) genomic_reference:SL2.40ch06 gene_region:35405402-35407278 transcript_region:SL2.40ch06:35405402..35407278- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- BIRC3_HUMAN); contains Interpro domain(s) IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00015004g0008.1 protein AED:0.47 eAED:0.74 QI:0|0|0|1|1|1|2|0|72 NbS00015004g0010.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|0|0|2|0|103 NbS00055245g0002.1 protein AED:0.03 eAED:0.14 QI:689|0.66|0.75|1|0|0.25|4|320|293; (*SWP) sp|Q570B4|KCS10_ARATH (e_value=5e-84) 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2;; (*TAIR) AT2G26250.1 (e_value=4e-85) | Symbols: FDH, KCS10 | 3-ketoacyl-CoA synthase 10 | chr2:11170799-11173059 REVERSE LENGTH=550;; (*ITAG) Solyc08g067260.2.1 (e_value=2e-110) genomic_reference:SL2.40ch08 gene_region:53519628-53523457 transcript_region:SL2.40ch08:53519628..53523457+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00007311g0011.1 protein AED:0.30 eAED:0.32 QI:0|0.37|0.22|0.88|0.12|0.22|9|120|399; (*TAIR) AT2G20230.1 (e_value=4e-30) | Symbols: | Tetraspanin family protein | chr2:8725762-8727388 FORWARD LENGTH=270;; (*ITAG) Solyc09g063070.2.1 (e_value=7e-45) genomic_reference:SL2.40ch09 gene_region:56657761-56663158 transcript_region:SL2.40ch09:56657761..56663158+ functional_description:"Senescence-associated protein-like (ISS) (AHRD V1 ***- Q00X72_OSTTA)"; NbS00007311g0012.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.2|1|1|1|5|0|942; (*TAIR) AT4G28760.2 (e_value=5e-176) | Symbols: | Protein of unknown function (DUF3741) | chr4:14208640-14211811 FORWARD LENGTH=924;; (*ITAG) Solyc09g063080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:56663937-56667406 transcript_region:SL2.40ch09:56663937..56667406- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6B6 (AHRD V1 ***- Q9LKC1_ARATH)"; GO:0005515 NbS00007311g0005.1 protein AED:0.27 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|119; (*SWP) sp|Q9SVU5|GDL67_ARATH (e_value=3e-43) GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1;; (*TAIR) AT4G28780.1 (e_value=2e-44) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:14215603-14217159 FORWARD LENGTH=367;; (*ITAG) Solyc09g063060.2.1 (e_value=1e-57) genomic_reference:SL2.40ch09 gene_region:56650477-56653733 transcript_region:SL2.40ch09:56650477..56653733- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g28780 (AHRD V1 ***- GDL67_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00035602g0005.1 protein AED:0.26 eAED:0.26 QI:222|1|1|1|0.5|0.66|3|137|134; (*SWP) sp|Q8LBM2|TIF5A_ARATH (e_value=3e-23) Protein TIFY 5A OS=Arabidopsis thaliana GN=TIFY5A PE=1 SV=1;; (*TAIR) AT1G30135.1 (e_value=2e-24) | Symbols: JAZ8, TIFY5A | jasmonate-zim-domain protein 8 | chr1:10596516-10597095 FORWARD LENGTH=131;; (*ITAG) Solyc08g036660.2.1 (e_value=5e-40) genomic_reference:SL2.40ch08 gene_region:26241790-26243434 transcript_region:SL2.40ch08:26241790..26243434- go_terms:GO:0005515 functional_description:"Protein TIFY 5A (AHRD V1 ***- TIF5A_ARATH); contains Interpro domain(s) IPR018467 CCT domain-like "; GO:0005515 NbS00022663g0007.1 protein AED:0.45 eAED:0.49 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|177; (*TAIR) AT3G18760.1 (e_value=1e-54) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:6457930-6459558 REVERSE LENGTH=139;; (*ITAG) Solyc02g084380.2.1 (e_value=3e-77) genomic_reference:SL2.40ch02 gene_region:42082832-42084189 transcript_region:SL2.40ch02:42082832..42084189+ go_terms:GO:0005840 functional_description:"Genomic DNA chromosome 3 P1 clone MVE11 (AHRD V1 **-- Q9LSA1_ARATH); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00031221g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|72 NbS00002267g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|242|115; (*ITAG) Solyc02g088080.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44853505-44854784 transcript_region:SL2.40ch02:44853505..44854784+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002267g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.66|1|1|3|0|500; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=8e-90) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=6e-91) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc02g088070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44845106-44848336 transcript_region:SL2.40ch02:44845106..44848336+ go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00002687g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|85; (*ITAG) Solyc06g071080.2.1 (e_value=7e-36) genomic_reference:SL2.40ch06 gene_region:40055467-40056449 transcript_region:SL2.40ch06:40055467..40056449+ go_terms:GO:0016020 functional_description:"Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7KH80_ARALY); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00017580g0001.1 protein AED:0.24 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|132; (*ITAG) Solyc05g055970.2.1 (e_value=3e-41) genomic_reference:SL2.40ch05 gene_region:64527283-64529803 transcript_region:SL2.40ch05:64527283..64529803- functional_description:"Accelerated cell death 6 (Fragment) (AHRD V1 *--- D9IWX3_ARATH)"; NbS00004540g0001.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|156; (*SWP) sp|O48850|VA725_ARATH (e_value=1e-79) Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2;; (*TAIR) AT2G32670.1 (e_value=1e-80) | Symbols: ATVAMP725, VAMP725 | vesicle-associated membrane protein 725 | chr2:13857941-13859346 FORWARD LENGTH=285;; (*ITAG) Solyc09g091610.2.1 (e_value=7e-90) genomic_reference:SL2.40ch09 gene_region:66196968-66199642 transcript_region:SL2.40ch09:66196968..66199642- go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 **-- D7KE74_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00004540g0008.1 protein AED:0.19 eAED:0.20 QI:0|1|0.6|1|1|1|5|0|445; (*SWP) sp|Q0JD42|PDI52_ORYSJ (e_value=2e-168) Protein disulfide isomerase-like 5-2 OS=Oryza sativa subsp. japonica GN=PDIL5-2 PE=2 SV=2;; (*TAIR) AT1G35620.1 (e_value=2e-169) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440;; (*ITAG) Solyc06g065320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37121896-37126933 transcript_region:SL2.40ch06:37121896..37126933+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase (AHRD V1 **-* Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756 NbS00025472g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|432; (*SWP) sp|Q55ED4|U396_DICDI (e_value=2e-39) UPF0396 protein OS=Dictyostelium discoideum GN=DDB_G0269284 PE=3 SV=1;; (*TAIR) AT4G02720.1 (e_value=3e-80) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1204545-1205813 REVERSE LENGTH=422;; (*ITAG) Solyc11g071660.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52154367-52155974 transcript_region:SL2.40ch11:52154367..52155974- functional_description:"NF-kappa-B-activating protein (AHRD V1 *--- NKAP_HUMAN); contains Interpro domain(s) IPR009269 Protein of unknown function DUF926 "; NbS00040022g0001.1 protein AED:0.21 eAED:0.21 QI:331|0.90|0.91|1|0.90|0.83|12|454|422; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=2e-22) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT5G26670.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr5:9318456-9320816 FORWARD LENGTH=416;; (*ITAG) Solyc10g038130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:19661877-19666448 transcript_region:SL2.40ch10:19661877..19666448- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00002147g0005.1 protein AED:0.09 eAED:0.11 QI:0|1|0.66|1|1|1|6|0|643; (*SWP) sp|Q9C5X4|ATX1_ARATH (e_value=4e-78) Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2;; (*TAIR) AT2G31650.1 (e_value=3e-79) | Symbols: ATX1, SDG27 | homologue of trithorax | chr2:13455448-13462181 REVERSE LENGTH=1062;; (*ITAG) Solyc09g098250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67382642-67387802 transcript_region:SL2.40ch09:67382642..67387802+ go_terms:GO:0003676,GO:0005634 functional_description:"Trithorax-like protein histone-lysine N-methyltransferase (AHRD V1 *-*- A9SM72_PHYPA); contains Interpro domain(s) IPR018518 FY-rich, N-terminal subgroup "; GO:0003676,GO:0005634 NbS00002147g0105.1 protein AED:0.28 eAED:0.28 QI:0|0.84|0.9|1|0.78|0.85|20|0|951 NbS00001192g0005.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|552; (*SWP) sp|Q66GI4|PP179_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g32230, mitochondrial OS=Arabidopsis thaliana GN=At2g32230 PE=2 SV=1;; (*TAIR) AT2G32230.1 (e_value=0.0) | Symbols: PRORP1 | proteinaceous RNase P 1 | chr2:13679608-13681756 REVERSE LENGTH=572;; (*ITAG) Solyc06g065500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37276957-37282094 transcript_region:SL2.40ch06:37276957..37282094- go_terms:GO:0004526,GO:0005215 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEW3_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0004526,GO:0005215 NbS00001192g0013.1 protein AED:0.31 eAED:0.31 QI:83|0.6|0.63|1|0.6|0.72|11|176|602; (*SWP) sp|Q73KB2|SYS_TREDE (e_value=7e-110) Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=serS PE=3 SV=1;; (*TAIR) AT1G11870.2 (e_value=0.0) | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1:4003895-4006556 FORWARD LENGTH=514;; (*ITAG) Solyc04g074630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58158075-58162646 transcript_region:SL2.40ch04:58158075..58162646+ go_terms:GO:0004828 functional_description:"Seryl-tRNA synthetase (AHRD V1 **** B6TBG7_MAIZE); contains Interpro domain(s) IPR018156 Seryl-tRNA synthetase, class IIa, C-terminal "; GO:0004828 NbS00001192g0018.1 protein AED:0.24 eAED:0.24 QI:0|0.90|0.75|1|0.81|0.83|12|0|520; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-81) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G22460.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00001192g0014.1 protein AED:0.36 eAED:0.39 QI:54|0.72|0.58|1|0.81|0.75|12|0|353; (*SWP) sp|Q9THX6|TL29_SOLLC (e_value=0.0) Thylakoid lumenal 29 kDa protein, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1;; (*TAIR) AT4G09010.1 (e_value=3e-137) | Symbols: APX4, TL29 | ascorbate peroxidase 4 | chr4:5777502-5779338 REVERSE LENGTH=349;; (*ITAG) Solyc04g074640.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58163011-58168188 transcript_region:SL2.40ch04:58163011..58168188- go_terms:GO:0005031 functional_description:"L-ascorbate peroxidase (AHRD V1 ***- A8JG56_CHLRE); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0005031 NbS00001192g0009.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|94 NbS00060958g0001.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|1|1|2|0|365; (*SWP) sp|O65555|Y4094_ARATH (e_value=3e-99) BTB/POZ domain-containing protein At4g30940 OS=Arabidopsis thaliana GN=At4g30940 PE=2 SV=1;; (*TAIR) AT4G30940.1 (e_value=3e-100) | Symbols: | BTB/POZ domain with WD40/YVTN repeat-like protein | chr4:15055149-15056474 FORWARD LENGTH=441;; (*ITAG) Solyc12g010100.1.1 (e_value=5e-117) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3230800-3232131 transcript_region:SL2.40ch12:3230800..3232131+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 *-*- Q54EU5_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00031970g0003.1 protein AED:0.22 eAED:0.22 QI:782|1|0.8|1|1|1|5|0|440; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=0.0) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1;; (*TAIR) AT2G20680.1 (e_value=0.0) | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily protein | chr2:8921024-8923066 FORWARD LENGTH=433;; (*ITAG) Solyc07g053920.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59657150-59661028 transcript_region:SL2.40ch07:59657150..59661028- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00006631g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|196; (*TAIR) AT5G20810.1 (e_value=3e-46) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc05g025920.2.1 (e_value=2e-79) genomic_reference:SL2.40ch05 gene_region:38034093-38036055 transcript_region:SL2.40ch05:38034093..38036055+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00019840g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|303; (*SWP) sp|Q94ID2|IPT5_ARATH (e_value=2e-108) Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=2;; (*TAIR) AT5G19040.1 (e_value=2e-109) | Symbols: ATIPT5, IPT5 | isopentenyltransferase 5 | chr5:6362389-6363381 REVERSE LENGTH=330;; (*ITAG) Solyc01g080150.2.1 (e_value=4e-162) genomic_reference:SL2.40ch01 gene_region:71838477-71840230 transcript_region:SL2.40ch01:71838477..71840230+ go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- B6JYB4_SCHJY); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00019840g0208.1 protein AED:0.16 eAED:0.16 QI:84|0.5|0.4|1|0.25|0.2|5|0|445 NbS00008827g0003.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|1|1|3|0|810; (*SWP) sp|Q8RXF1|SF3A1_ARATH (e_value=0.0) Probable splicing factor 3A subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2;; (*TAIR) AT1G14650.2 (e_value=0.0) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein | chr1:5028077-5030520 FORWARD LENGTH=785;; (*ITAG) Solyc04g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:451734-456916 transcript_region:SL2.40ch04:451734..456916+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbS00008827g0009.1 protein AED:0.21 eAED:0.30 QI:0|0|0|1|0|0|5|0|418; (*ITAG) Solyc03g044360.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00021019g0002.1 protein AED:0.15 eAED:0.15 QI:631|1|0.8|1|0.75|0.6|5|0|463; (*SWP) sp|Q9LVE0|PTR33_ARATH (e_value=0.0) Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1;; (*TAIR) AT3G21670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:7626942-7628954 REVERSE LENGTH=590;; (*ITAG) Solyc07g049290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56866773-56869777 transcript_region:SL2.40ch07:56866773..56869777- go_terms:GO:0042937,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00010898g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|178; (*SWP) sp|Q9SLB7|LBD16_ARATH (e_value=2e-48) LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1;; (*TAIR) AT2G42430.1 (e_value=2e-49) | Symbols: LBD16, ASL18 | lateral organ boundaries-domain 16 | chr2:17663668-17665153 FORWARD LENGTH=245;; (*ITAG) Solyc06g083930.1.1 (e_value=5e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45515235-45516499 transcript_region:SL2.40ch06:45515235..45516499- functional_description:"LOB domain protein-like (AHRD V1 *-*- Q6K713_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00006963g0003.1 protein AED:0.26 eAED:0.26 QI:82|1|1|1|1|1|5|370|325; (*SWP) sp|Q73RS2|FOLD_TREDE (e_value=9e-74) Bifunctional protein FolD OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=folD PE=3 SV=1;; (*TAIR) AT2G38660.3 (e_value=8e-132) | Symbols: | Amino acid dehydrogenase family protein | chr2:16166392-16168194 FORWARD LENGTH=352;; (*ITAG) Solyc08g048240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:38348176-38354954 transcript_region:SL2.40ch08:38348176..38354954+ go_terms:GO:0004487,GO:0004488 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0004487,GO:0004488 NbS00014880g0008.1 protein AED:0.04 eAED:0.04 QI:77|1|1|1|1|1|5|99|529; (*SWP) sp|Q96GN5|CDA7L_HUMAN (e_value=3e-27) Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2;; (*TAIR) AT2G23530.1 (e_value=2e-101) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 | chr2:10020652-10022804 REVERSE LENGTH=552;; (*ITAG) Solyc02g090200.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46403055-46408254 transcript_region:SL2.40ch02:46403055..46408254- functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- Q5M7M4_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00014880g0009.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0.5|0.66|3|0|988; (*SWP) sp|Q8LGM7|MOCOS_SOLLC (e_value=3e-16) Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1;; (*TAIR) AT4G37100.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:17479173-17481863 REVERSE LENGTH=896;; (*ITAG) Solyc02g090190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46390971-46393760 transcript_region:SL2.40ch02:46390971..46393760- go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 *-*- C9SRE5_VERA1); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00045656g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|290; (*SWP) sp|Q9LW49|ERF4_NICSY (e_value=1e-43) Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1;; (*TAIR) AT5G44210.1 (e_value=2e-23) | Symbols: ERF9, ATERF9, ATERF-9 | erf domain protein 9 | chr5:17806742-17807344 FORWARD LENGTH=200;; (*ITAG) Solyc07g053740.1.1 (e_value=3e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:59491419-59492096 transcript_region:SL2.40ch07:59491419..59492096+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00018327g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|4|384|499; (*SWP) sp|Q6NKX1|PROD2_ARATH (e_value=0.0) Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1;; (*TAIR) AT5G38710.1 (e_value=0.0) | Symbols: | Methylenetetrahydrofolate reductase family protein | chr5:15501340-15503899 FORWARD LENGTH=476;; (*ITAG) Solyc02g089620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45954478-45956600 transcript_region:SL2.40ch02:45954478..45956600- go_terms:GO:0005515,GO:0004657 functional_description:"Proline dehydrogenase (AHRD V1 **** A1E289_ACTDE); contains Interpro domain(s) IPR015659 Proline oxidase "; GO:0005515,GO:0004657 NbS00039037g0005.1 protein AED:0.16 eAED:0.16 QI:79|1|0.5|1|1|1|2|0|159; (*SWP) sp|P17642|PRS2_SOLTU (e_value=4e-60) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*ITAG) Solyc12g096960.1.1 (e_value=2e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64005405-64006610 transcript_region:SL2.40ch12:64005405..64006610+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1.0502 (AHRD V1 ***- Q4VPK6_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00045400g0001.1 protein AED:0.02 eAED:0.02 QI:344|0.5|0.66|1|0|0|3|413|131; (*TAIR) AT3G54040.1 (e_value=1e-30) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc01g099920.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:81799477-81800865 transcript_region:SL2.40ch01:81799477..81800865- functional_description:"Photoassimilate-responsive protein PAR-1b-like protein (AHRD V1 ***- Q9LCZ9_ARATH); contains Interpro domain(s) IPR009489 PAR1 "; NbS00003064g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.6|0.63|1|0.9|0.81|11|542|357; (*SWP) sp|P47927|AP2_ARATH (e_value=3e-108) Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1;; (*TAIR) AT4G36920.2 (e_value=2e-109) | Symbols: AP2 | Integrase-type DNA-binding superfamily protein | chr4:17400998-17403140 FORWARD LENGTH=432;; (*ITAG) Solyc02g093150.2.1 (e_value=7e-131) genomic_reference:SL2.40ch02 gene_region:48655673-48658630 transcript_region:SL2.40ch02:48655673..48658630+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00025016g0005.1 protein AED:0.08 eAED:0.08 QI:206|0.5|0.66|1|0.5|0.33|3|409|177; (*TAIR) AT5G65650.1 (e_value=7e-45) | Symbols: | Protein of unknown function (DUF1195) | chr5:26239588-26241195 FORWARD LENGTH=185;; (*ITAG) Solyc02g085480.2.1 (e_value=5e-52) genomic_reference:SL2.40ch02 gene_region:42931628-42935881 transcript_region:SL2.40ch02:42931628..42935881+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00060332g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|730; (*TAIR) AT3G28720.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58100.1); Has 1610 Blast hits to 344 proteins in 85 species: Archae - 0; Bacteria - 567; Metazoa - 95; Fungi - 71; Plants - 145; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). | chr3:10782276-10784339 FORWARD LENGTH=687;; (*ITAG) Solyc02g087720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44615392-44617428 transcript_region:SL2.40ch02:44615392..44617428- go_terms:GO:0032259 functional_description:"At3g28720-like protein (Fragment) (AHRD V1 *-*- C4PEW7_9SOLN)"; GO:0032259 NbS00045234g0005.1 protein AED:0.11 eAED:0.11 QI:44|0|0.5|1|0|0|2|0|382; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=2e-95) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=2e-96) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc01g009320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3500773-3502283 transcript_region:SL2.40ch01:3500773..3502283- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00001545g0001.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|235; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=8e-50) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39020.1 (e_value=6e-111) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16295392-16296102 FORWARD LENGTH=236;; (*ITAG) Solyc10g084640.1.1 (e_value=3e-141) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63407161-63407859 transcript_region:SL2.40ch10:63407161..63407859+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00031604g0001.1 protein AED:0.04 eAED:0.04 QI:208|0.72|0.75|0.91|1|0.91|12|467|584; (*TAIR) AT5G16610.1 (e_value=3e-67) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5445068-5447665 REVERSE LENGTH=529;; (*ITAG) Solyc11g011070.1.1 (e_value=9e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4151926-4157337 transcript_region:SL2.40ch11:4151926..4157337- functional_description:"Genomic DNA chromosome 5 P1 clone MTG13 (AHRD V1 *--- Q9FMD6_ARATH)"; NbS00015705g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|0.5|2|0|169; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-40) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT5G25170.1 (e_value=7e-65) | Symbols: | PPPDE putative thiol peptidase family protein | chr5:8693257-8694438 FORWARD LENGTH=218;; (*ITAG) Solyc03g117100.2.1 (e_value=6e-56) genomic_reference:SL2.40ch03 gene_region:60404176-60405950 transcript_region:SL2.40ch03:60404176..60405950+ functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00015705g0006.1 protein AED:0.13 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|234; (*SWP) sp|Q42485|ZFP1_ARATH (e_value=9e-30) Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1;; (*TAIR) AT1G80730.1 (e_value=7e-31) | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 | chr1:30339493-30340179 REVERSE LENGTH=228;; (*ITAG) Solyc03g117070.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60387755-60388444 transcript_region:SL2.40ch03:60387755..60388444+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013968g0017.1 protein AED:0.04 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.33|3|0|601; (*SWP) sp|Q7Y201|PME13_ARATH (e_value=4e-152) Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=2;; (*TAIR) AT2G26450.1 (e_value=3e-153) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11251279-11253446 FORWARD LENGTH=614;; (*ITAG) Solyc01g057220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:52745152-52747295 transcript_region:SL2.40ch01:52745152..52747295+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9S005_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00013968g0018.1 protein AED:0.08 eAED:0.08 QI:381|0.78|0.8|0.93|0.42|0.4|15|0|618; (*TAIR) AT2G03060.2 (e_value=2e-33) | Symbols: AGL30 | AGAMOUS-like 30 | chr2:901614-903569 FORWARD LENGTH=386;; (*ITAG) Solyc11g045310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37367707-37374614 transcript_region:SL2.40ch11:37367707..37374614+ functional_description:"MADS box protein (AHRD V1 ***- Q84KS1_TOBAC)"; NbS00013968g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|259; (*TAIR) AT3G28630.2 (e_value=8e-53) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=321;; (*ITAG) Solyc11g045360.1.1 (e_value=4e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:37675222-37675821 transcript_region:SL2.40ch11:37675222..37675821+ go_terms:GO:0016021 functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 **-- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; GO:0016021 NbS00013968g0016.1 protein AED:0.21 eAED:0.22 QI:0|0.6|0.5|1|0.8|0.66|6|0|380; (*SWP) sp|Q9P6P9|PDK_SCHPO (e_value=8e-69) [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.11c PE=2 SV=1;; (*TAIR) AT3G06483.1 (e_value=0.0) | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366;; (*ITAG) Solyc01g057210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:52729784-52733591 transcript_region:SL2.40ch01:52729784..52733591+ go_terms:GO:0004740 functional_description:"Pyruvate dehydrogenase kinase (AHRD V1 **** Q700B0_CICAR); contains Interpro domain(s) IPR018955 Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial "; GO:0004740 NbS00042189g0006.1 protein AED:0.03 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|711; (*TAIR) AT4G31200.1 (e_value=0.0) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650;; (*ITAG) Solyc10g083200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00024031g0008.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.69|0.84|0.66|0.76|13|460|416; (*SWP) sp|Q39012|KSG9_ARATH (e_value=0.0) Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1;; (*TAIR) AT1G06390.2 (e_value=0.0) | Symbols: GSK1, ATGSK1, ATSK22, SK22, BIL2, ATSK2-3 | GSK3/SHAGGY-like protein kinase 1 | chr1:1946860-1950417 FORWARD LENGTH=407;; (*ITAG) Solyc07g055200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60638546-60643483 transcript_region:SL2.40ch07:60638546..60643483+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024031g0005.1 protein AED:0.32 eAED:0.32 QI:0|0.62|0.77|1|1|1|9|474|328; (*SWP) sp|P46643|AAT1_ARATH (e_value=6e-121) Aspartate aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=ASP1 PE=1 SV=1;; (*TAIR) AT2G30970.2 (e_value=4e-122) | Symbols: ASP1 | aspartate aminotransferase 1 | chr2:13179012-13181686 FORWARD LENGTH=430;; (*ITAG) Solyc07g055210.2.1 (e_value=9e-134) genomic_reference:SL2.40ch07 gene_region:60644169-60648539 transcript_region:SL2.40ch07:60644169..60648539- go_terms:GO:0006520,GO:0009058,GO:0030170 functional_description:"Aspartate aminotransferase (AHRD V1 ***- B9SW33_RICCO); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0006520,GO:0009058,GO:0030170 NbS00059548g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|284; (*TAIR) AT1G49330.1 (e_value=3e-64) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:18250043-18251038 FORWARD LENGTH=331;; (*ITAG) Solyc09g090450.1.1 (e_value=6e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65310473-65311249 transcript_region:SL2.40ch09:65310473..65311249- functional_description:"Unknown Protein (AHRD V1)"; NbS00017461g0016.1 protein AED:0.13 eAED:0.13 QI:423|0.75|0.6|1|0.25|0.6|5|211|182; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=7e-63) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=5e-64) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc04g081770.2.1 (e_value=5e-100) genomic_reference:SL2.40ch04 gene_region:63283322-63285545 transcript_region:SL2.40ch04:63283322..63285545+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00017461g0012.1 protein AED:0.15 eAED:0.15 QI:370|1|0.87|1|1|1|8|0|784; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-148) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc04g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00017461g0011.1 protein AED:0.24 eAED:0.26 QI:634|0.5|0.57|1|0.5|0.42|7|458|359; (*TAIR) AT4G35890.1 (e_value=5e-16) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr4:16997433-17000410 FORWARD LENGTH=523;; (*ITAG) Solyc04g081820.2.1 (e_value=3e-105) genomic_reference:SL2.40ch04 gene_region:63303699-63308948 transcript_region:SL2.40ch04:63303699..63308948- functional_description:"La domain containing protein expressed (AHRD V1 *--- Q8LMP9_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00017461g0004.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|77 NbS00010173g0011.1 protein AED:0.08 eAED:0.08 QI:0|0.8|0.66|1|0.8|0.66|6|352|258; (*SWP) sp|P35685|RL7A_ORYSJ (e_value=1e-144) 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1;; (*TAIR) AT2G47610.1 (e_value=2e-145) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g064460.2.1 (e_value=5e-156) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00010173g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0|1|1|1|4|0|611; (*TAIR) AT2G47010.2 (e_value=1e-148) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc11g032090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:21384533-21389037 transcript_region:SL2.40ch11:21384533..21389037- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00018223g0006.1 protein AED:0.04 eAED:0.04 QI:189|1|0.66|1|0.5|0.66|3|25|100; (*ITAG) Solyc09g007480.2.1 (e_value=1e-16) genomic_reference:SL2.40ch09 gene_region:1040671-1042715 transcript_region:SL2.40ch09:1040671..1042715+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018223g0005.1 protein AED:0.17 eAED:0.17 QI:172|1|1|1|1|1|3|480|228; (*SWP) sp|B4FUS3|CNR8_MAIZE (e_value=6e-86) Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1;; (*TAIR) AT2G37110.1 (e_value=4e-98) | Symbols: | PLAC8 family protein | chr2:15592689-15593726 FORWARD LENGTH=242;; (*ITAG) Solyc09g007490.2.1 (e_value=1e-126) genomic_reference:SL2.40ch09 gene_region:1044320-1047604 transcript_region:SL2.40ch09:1044320..1047604+ functional_description:"Cell number regulator 8 (AHRD V1 **-- B4FUS3_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00055931g0001.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|167; (*SWP) sp|Q9SX38|DRL4_ARATH (e_value=5e-12) Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=2;; (*TAIR) AT1G50180.1 (e_value=4e-13) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc04g009130.2.1 (e_value=3e-13) genomic_reference:SL2.40ch04 gene_region:2646823-2649379 transcript_region:SL2.40ch04:2646823..2649379+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00003221g0003.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|197; (*ITAG) Solyc10g078780.1.1 (e_value=9e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59812629-59813683 transcript_region:SL2.40ch10:59812629..59813683- go_terms:GO:0009790 functional_description:"Seed maturation protein LEA 4 (AHRD V1 *-*- Q9FNW7_GLYTO); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00003221g0008.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|1|1|4|0|332; (*SWP) sp|Q7XUC5|P2C43_ORYSJ (e_value=2e-151) Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584300 PE=2 SV=2;; (*TAIR) AT5G06750.3 (e_value=6e-142) | Symbols: | Protein phosphatase 2C family protein | chr5:2086403-2088245 REVERSE LENGTH=393;; (*ITAG) Solyc10g078820.1.1 (e_value=6e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59833900-59836380 transcript_region:SL2.40ch10:59833900..59836380- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2c-like protein (AHRD V1 ***- Q8S2S5_THEHA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00058503g0006.1 protein AED:0.09 eAED:0.10 QI:32|0.87|0.77|1|0.62|0.55|9|0|708; (*SWP) sp|Q339N5|CSLH1_ORYSJ (e_value=0.0) Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2;; (*TAIR) AT2G32540.1 (e_value=0.0) | Symbols: ATCSLB04, CSLB04, ATCSLB4 | cellulose synthase-like B4 | chr2:13814686-13818289 FORWARD LENGTH=755;; (*ITAG) Solyc07g051820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57631648-57644639 transcript_region:SL2.40ch07:57631648..57644639- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT12_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00052797g0005.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|194; (*SWP) sp|Q05047|C72A1_CATRO (e_value=4e-66) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14610.1 (e_value=2e-64) | Symbols: CYP72A7 | cytochrome P450, family 72, subfamily A, polypeptide 7 | chr3:4912565-4914503 FORWARD LENGTH=512;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00052797g0002.1 protein AED:0.43 eAED:0.64 QI:0|0|0|1|1|1|2|0|91; (*TAIR) AT3G14640.1 (e_value=2e-14) | Symbols: CYP72A10 | cytochrome P450, family 72, subfamily A, polypeptide 10 | chr3:4919856-4921787 FORWARD LENGTH=514;; (*ITAG) Solyc07g043460.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:54570495-54572614 transcript_region:SL2.40ch07:54570495..54572614+ go_terms:GO:0019825 functional_description:"Cytochrome P450 (AHRD V1 ***- A9ZT56_COPJA); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00015996g0004.1 protein AED:0.33 eAED:0.33 QI:147|1|0.88|1|0.62|0.55|9|0|282; (*SWP) sp|Q8GZ43|YZR3_ARATH (e_value=3e-120) RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana GN=At1g67325 PE=1 SV=1;; (*TAIR) AT1G67325.1 (e_value=5e-123) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr1:25209825-25212412 REVERSE LENGTH=287;; (*ITAG) Solyc05g015500.2.1 (e_value=8e-160) genomic_reference:SL2.40ch05 gene_region:10760271-10764983 transcript_region:SL2.40ch05:10760271..10764983+ go_terms:GO:0005488 functional_description:"Zinc finger Ran-binding domain-containing protein 2 (AHRD V1 *-** ZRAB2_RAT); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00005101g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|1|0.75|0.6|5|0|786; (*SWP) sp|Q9SAK8|CHX2_ARATH (e_value=0.0) Cation/H(+) antiporter 2 OS=Arabidopsis thaliana GN=CHX2 PE=2 SV=1;; (*TAIR) AT1G79400.1 (e_value=0.0) | Symbols: ATCHX2, CHX2 | cation/H+ exchanger 2 | chr1:29864992-29867840 FORWARD LENGTH=783;; (*ITAG) Solyc03g032240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9045423-9049866 transcript_region:SL2.40ch03:9045423..9049866- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 2 (AHRD V1 **** CHX2_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00015594g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.94|0.94|1|0.88|0.94|18|253|863; (*SWP) sp|Q6Z382|COPG2_ORYSJ (e_value=0.0) Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1;; (*TAIR) AT4G34450.1 (e_value=0.0) | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886;; (*ITAG) Solyc01g109540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbS00015594g0020.1 protein AED:0.17 eAED:0.17 QI:246|1|1|1|1|1|6|306|478; (*SWP) sp|Q9M069|E137_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2;; (*TAIR) AT4G34480.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:16481147-16483988 REVERSE LENGTH=504;; (*ITAG) Solyc01g109570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88237557-88242917 transcript_region:SL2.40ch01:88237557..88242917- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T289_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00015594g0017.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|1|0.5|0.33|3|0|109; (*ITAG) Solyc03g044840.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00015594g0018.1 protein AED:0.26 eAED:0.26 QI:148|1|1|1|0.6|0.66|6|507|377; (*SWP) sp|P93397|GBB1_TOBAC (e_value=0.0) Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G34460.1 (e_value=0.0) | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377;; (*ITAG) Solyc01g109560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88230608-88236477 transcript_region:SL2.40ch01:88230608..88236477- go_terms:GO:0003924 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 ***- C1GED5_PARBD); contains Interpro domain(s) IPR016346 Guanine nucleotide-binding protein, beta subunit "; GO:0003924 NbS00015594g0016.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|5|0|306 NbS00015594g0019.1 protein AED:0.41 eAED:0.51 QI:0|0|0|1|0|0|3|0|223; (*TAIR) AT3G18870.1 (e_value=8e-46) | Symbols: | Mitochondrial transcription termination factor family protein | chr3:6508515-6509339 REVERSE LENGTH=274;; (*ITAG) Solyc01g109550.2.1 (e_value=5e-92) genomic_reference:SL2.40ch01 gene_region:88229243-88230220 transcript_region:SL2.40ch01:88229243..88230220- functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00015594g0021.1 protein AED:0.14 eAED:0.32 QI:120|0|0|1|0|0|2|0|48 NbS00032796g0004.1 protein AED:0.55 eAED:0.55 QI:0|0.25|0.2|0.6|1|1|5|0|188; (*TAIR) AT1G55340.1 (e_value=5e-15) | Symbols: | Protein of unknown function (DUF1639) | chr1:20652605-20653469 FORWARD LENGTH=205;; (*ITAG) Solyc01g005580.2.1 (e_value=1e-35) genomic_reference:SL2.40ch01 gene_region:406975-409234 transcript_region:SL2.40ch01:406975..409234- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00005770g0007.1 protein AED:0.19 eAED:0.19 QI:136|1|0.92|1|1|1|14|314|626; (*SWP) sp|O80605|SUC3_ARATH (e_value=0.0) Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1;; (*TAIR) AT2G02860.1 (e_value=0.0) | Symbols: SUT2, ATSUC3, SUC3, ATSUT2 | sucrose transporter 2 | chr2:828546-832296 REVERSE LENGTH=594;; (*ITAG) Solyc05g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1804154-1810447 transcript_region:SL2.40ch05:1804154..1810447- go_terms:GO:0008506 functional_description:"Sucrose transporter-like protein (AHRD V1 **** Q9FVL6_SOLLC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0008506 NbS00005770g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|0|0|2|508|126; (*TAIR) AT1G14340.1 (e_value=5e-32) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc05g007200.2.1 (e_value=1e-58) genomic_reference:SL2.40ch05 gene_region:1811040-1816032 transcript_region:SL2.40ch05:1811040..1816032- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00005770g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|0|0|2|508|126; (*TAIR) AT1G14340.1 (e_value=5e-32) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897709-4898776 FORWARD LENGTH=244;; (*ITAG) Solyc05g007200.2.1 (e_value=1e-58) genomic_reference:SL2.40ch05 gene_region:1811040-1816032 transcript_region:SL2.40ch05:1811040..1816032- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif containing protein (AHRD V1 **-- B6T581_MAIZE); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00020543g0004.1 protein AED:0.17 eAED:0.17 QI:178|1|0.5|1|1|1|2|0|323; (*SWP) sp|Q6P5M2|WDR61_DANRE (e_value=3e-76) WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1;; (*TAIR) AT4G29830.1 (e_value=2e-157) | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321;; (*ITAG) Solyc07g041080.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49110384-49114223 transcript_region:SL2.40ch07:49110384..49114223+ go_terms:GO:0000166 functional_description:"WD repeat-containing protein 61 (AHRD V1 **-- B5XGQ3_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00057110g0005.1 protein AED:0.29 eAED:0.38 QI:0|0.75|0.4|1|0.25|0.2|5|0|222; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-32) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT3G58640.2 (e_value=2e-92) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc12g013980.1.1 (e_value=2e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4817640-4824070 transcript_region:SL2.40ch12:4817640..4824070+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00057110g0004.1 protein AED:0.38 eAED:0.47 QI:0|0|0|1|1|1|2|0|109; (*SWP) sp|Q05609|CTR1_ARATH (e_value=7e-32) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT3G58640.2 (e_value=5e-53) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc12g013980.1.1 (e_value=6e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4817640-4824070 transcript_region:SL2.40ch12:4817640..4824070+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00051197g0005.1 protein AED:0.14 eAED:0.15 QI:0|0.88|0.8|1|1|1|10|0|891; (*SWP) sp|Q9FFQ1|RH31_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2;; (*TAIR) AT5G63630.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25472598-25476402 REVERSE LENGTH=788;; (*ITAG) Solyc01g095740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78698484-78705574 transcript_region:SL2.40ch01:78698484..78705574- go_terms:GO:0003723 functional_description:"ATP-dependent RNA helicase DBP4 (AHRD V1 *-** C1GZM0_PARBA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003723 NbS00017239g0008.1 protein AED:0.33 eAED:0.33 QI:2|0.5|0.28|0.85|0.33|0.28|7|0|299; (*TAIR) AT5G61670.2 (e_value=4e-138) | Symbols: | Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. | chr5:24783629-24785201 FORWARD LENGTH=307;; (*ITAG) Solyc03g093830.2.1 (e_value=1e-147) genomic_reference:SL2.40ch03 gene_region:48957437-48962293 transcript_region:SL2.40ch03:48957437..48962293+ functional_description:"Chaperone protein dnaJ-like (AHRD V1 **-- Q6H3Y3_ORYSJ)"; NbS00017239g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|0.57|0.87|8|375|522; (*TAIR) AT5G51150.1 (e_value=0.0) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:20789034-20791495 FORWARD LENGTH=531;; (*ITAG) Solyc03g093990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49148853-49155210 transcript_region:SL2.40ch03:49148853..49155210- functional_description:"Hypothetical integral membrane protein conserved (AHRD V1 *-*- B9WBN5_CANDC)"; NbS00038856g0001.1 protein AED:0.25 eAED:0.25 QI:0|0.25|0.2|0.8|1|1|5|0|221; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=4e-119) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=3e-120) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc06g074300.2.1 (e_value=3e-129) genomic_reference:SL2.40ch06 gene_region:42312797-42316469 transcript_region:SL2.40ch06:42312797..42316469- go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00043009g0009.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.63|0.90|0.6|0.45|11|386|685; (*SWP) sp|Q9FMK7|BT1_ARATH (e_value=1e-129) BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1;; (*TAIR) AT5G63160.1 (e_value=9e-131) | Symbols: BT1 | BTB and TAZ domain protein 1 | chr5:25333485-25335399 REVERSE LENGTH=365;; (*ITAG) Solyc06g071820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40629302-40632825 transcript_region:SL2.40ch06:40629302..40632825- go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type poz protein (AHRD V1 *--- Q179U2_AEDAE); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00012511g0011.1 protein AED:0.00 eAED:0.04 QI:0|1|0|1|0|0.5|2|0|338; (*SWP) sp|Q8VWG3|TT1_ARATH (e_value=2e-97) Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1;; (*TAIR) AT3G57670.1 (e_value=7e-133) | Symbols: NTT, WIP2 | C2H2-type zinc finger family protein | chr3:21370936-21373121 FORWARD LENGTH=383;; (*ITAG) Solyc11g062060.1.1 (e_value=7e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45968163-45970774 transcript_region:SL2.40ch11:45968163..45970774- go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- D7KHP2_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00012511g0009.1 protein AED:0.13 eAED:0.13 QI:220|0.87|0.85|1|0.84|0.85|34|0|2745; (*SWP) sp|Q9UTN6|SNF21_SCHPO (e_value=3e-150) Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1;; (*TAIR) AT2G28290.1 (e_value=0.0) | Symbols: SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12056771-12072950 FORWARD LENGTH=3574;; (*ITAG) Solyc11g062010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45838303-45866988 transcript_region:SL2.40ch11:45838303..45866988+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--- CHD1_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00012511g0002.1 protein AED:0.44 eAED:0.49 QI:0|0|0|1|1|1|2|0|541; (*ITAG) Solyc11g062010.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45838303-45866988 transcript_region:SL2.40ch11:45838303..45866988+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--- CHD1_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00056335g0003.1 protein AED:0.48 eAED:0.61 QI:0|0.5|0|1|1|1|3|0|112; (*SWP) sp|Q9ZRE2|RABD1_ARATH (e_value=9e-50) Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1;; (*TAIR) AT3G11730.1 (e_value=7e-51) | Symbols: ATFP8, ATRABD1, RABD1 | Ras-related small GTP-binding family protein | chr3:3709490-3711397 REVERSE LENGTH=205;; (*ITAG) Solyc01g103370.2.1 (e_value=6e-58) genomic_reference:SL2.40ch01 gene_region:83750652-83755639 transcript_region:SL2.40ch01:83750652..83755639+ go_terms:GO:0007264,GO:0015031,GO:0005525 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- C0HBJ4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0007264,GO:0015031,GO:0005525 NbS00032224g0004.1 protein AED:0.16 eAED:0.16 QI:138|0.87|0.77|1|0.75|0.55|9|389|535; (*TAIR) AT5G66600.3 (e_value=1e-128) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26578315 REVERSE LENGTH=614;; (*ITAG) Solyc10g051030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46857362-46859735 transcript_region:SL2.40ch10:46857362..46859735- functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00002667g0004.1 protein AED:0.10 eAED:0.11 QI:80|0.8|0.75|1|1|1|16|180|1351; (*SWP) sp|Q9GYZ0|KIF15_STRPU (e_value=3e-96) Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1;; (*TAIR) AT3G23670.1 (e_value=0.0) | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated kinesin-related protein, putative | chr3:8519290-8525055 FORWARD LENGTH=1313;; (*ITAG) Solyc09g097860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67119883-67128642 transcript_region:SL2.40ch09:67119883..67128642+ go_terms:GO:0008574 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LUG0_ARATH); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0008574 NbS00043786g0003.1 protein AED:0.28 eAED:0.28 QI:56|1|1|1|0|0.66|3|626|22 NbS00043786g0004.1 protein AED:0.04 eAED:0.41 QI:0|0.5|0|0.66|1|1|3|0|178 NbS00046865g0008.1 protein AED:0.28 eAED:0.28 QI:396|0.44|0.2|0.9|0.55|0.6|10|0|315; (*TAIR) AT5G54780.1 (e_value=5e-119) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432;; (*ITAG) Solyc12g005220.1.1 (e_value=1e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:141022-146306 transcript_region:SL2.40ch12:141022..146306+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00046865g0003.1 protein AED:0.30 eAED:0.30 QI:288|1|0.8|1|0.75|0.6|5|614|113; (*SWP) sp|Q0D5W6|SUI1_ORYSJ (e_value=4e-73) Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1;; (*TAIR) AT1G54290.1 (e_value=6e-72) | Symbols: | Translation initiation factor SUI1 family protein | chr1:20268710-20269390 REVERSE LENGTH=113;; (*ITAG) Solyc10g006470.2.1 (e_value=7e-80) genomic_reference:SL2.40ch10 gene_region:1067254-1069731 transcript_region:SL2.40ch10:1067254..1069731- go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** A4QR10_MAGGR); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00011909g0001.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.2|1|1|5|0|108 NbS00038118g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.85|1|0.83|0.85|7|424|341; (*SWP) sp|Q07G10|ALKB8_XENTR (e_value=3e-46) Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2;; (*TAIR) AT1G31600.3 (e_value=3e-149) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:11313376-11315199 REVERSE LENGTH=431;; (*ITAG) Solyc12g096230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63588077-63591891 transcript_region:SL2.40ch12:63588077..63591891+ go_terms:GO:0003676 functional_description:"Alkylated DNA repair protein alkB homolog 6 (AHRD V1 *--- D3PI67_9MAXI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676 NbS00009137g0025.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|0.66|0.75|4|202|239; (*SWP) sp|Q9SX77|UMP6_ARATH (e_value=1e-80) Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1;; (*TAIR) AT1G47420.1 (e_value=1e-81) | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395774-17397176 REVERSE LENGTH=257;; (*ITAG) Solyc04g079180.2.1 (e_value=4e-136) genomic_reference:SL2.40ch04 gene_region:61334211-61336777 transcript_region:SL2.40ch04:61334211..61336777- functional_description:"Unknown Protein (AHRD V1)"; NbS00009137g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|466; (*SWP) sp|Q9FX35|PP117_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2;; (*TAIR) AT1G73400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27598106-27599812 FORWARD LENGTH=568;; (*ITAG) Solyc04g079150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:61320136-61321845 transcript_region:SL2.40ch04:61320136..61321845- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRI2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009137g0022.1 protein AED:0.20 eAED:0.20 QI:429|0.46|0.62|0.81|0.86|0.81|16|181|525; (*SWP) sp|Q9FX08|P2C12_ARATH (e_value=0.0) Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1;; (*TAIR) AT1G47380.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428;; (*ITAG) Solyc04g079120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61298550-61303970 transcript_region:SL2.40ch04:61298550..61303970- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein expressed (AHRD V1 ***- Q94LH3_ORYSJ); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00009137g0027.1 protein AED:0.25 eAED:0.25 QI:272|0.33|0.75|1|1|1|4|212|155; (*SWP) sp|Q9FMZ4|Y5270_ARATH (e_value=1e-30) B3 domain-containing protein At5g42700 OS=Arabidopsis thaliana GN=At5g42700 PE=2 SV=2;; (*TAIR) AT5G42700.1 (e_value=1e-31) | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:17122171-17124177 FORWARD LENGTH=211;; (*ITAG) Solyc04g079130.2.1 (e_value=2e-45) genomic_reference:SL2.40ch04 gene_region:61309179-61311733 transcript_region:SL2.40ch04:61309179..61311733- go_terms:GO:0006355 functional_description:"B3 domain-containing protein At5g42700 (AHRD V1 ***- Y5270_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00009137g0026.1 protein AED:0.28 eAED:0.28 QI:264|1|1|1|0.85|0.75|8|171|408; (*TAIR) AT5G44250.1 (e_value=2e-167) | Symbols: | Protein of unknown function DUF829, transmembrane 53 | chr5:17823876-17825620 REVERSE LENGTH=403;; (*ITAG) Solyc04g079140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61312603-61317400 transcript_region:SL2.40ch04:61312603..61317400- functional_description:"Os11g0614900 protein (Fragment) (AHRD V1 *-*- Q0IRN0_ORYSJ); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00009137g0018.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.33|1|1|3|0|86; (*ITAG) Solyc00g281110.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20830500-20830868 transcript_region:SL2.40ch00:20830500..20830868- functional_description:"Unknown Protein (AHRD V1)"; NbS00009137g0036.1 protein AED:0.03 eAED:0.03 QI:0|1|0.85|1|0.83|0.85|7|405|323; (*TAIR) AT4G33380.1 (e_value=3e-117) | Symbols: | unknown protein; Has 194 Blast hits to 189 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:16072064-16074605 FORWARD LENGTH=328;; (*ITAG) Solyc04g079160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61324551-61331846 transcript_region:SL2.40ch04:61324551..61331846+ functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 *--- A8HX99_CHLRE)"; NbS00009137g0004.1 protein AED:0.11 eAED:0.11 QI:645|0.9|0.81|1|0.3|0.27|11|1648|233; (*ITAG) Solyc03g044840.1.1 (e_value=9e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00009137g0035.1 protein AED:0.29 eAED:0.36 QI:0|0|0|1|0|0.33|3|0|165; (*ITAG) Solyc04g079170.2.1 (e_value=2e-24) genomic_reference:SL2.40ch04 gene_region:61333035-61334522 transcript_region:SL2.40ch04:61333035..61334522+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024691g0008.1 protein AED:0.31 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|126; (*ITAG) Solyc05g033910.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:46423905-46425314 transcript_region:SL2.40ch05:46423905..46425314+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024691g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|254; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=9e-33) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=2e-61) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc08g007560.1.1 (e_value=3e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2106197-2107409 transcript_region:SL2.40ch08:2106197..2107409+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00024691g0001.1 protein AED:0.20 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|168; (*SWP) sp|O65499|ZAT3_ARATH (e_value=1e-33) Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=2 SV=1;; (*TAIR) AT4G35280.1 (e_value=9e-35) | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283 REVERSE LENGTH=284;; (*ITAG) Solyc06g060480.1.1 (e_value=4e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34901141-34901950 transcript_region:SL2.40ch06:34901141..34901950- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U314_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00024691g0011.1 protein AED:0.38 eAED:0.38 QI:0|1|1|1|1|1|4|230|326; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=4e-60) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=3e-61) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc06g060490.2.1 (e_value=4e-150) genomic_reference:SL2.40ch06 gene_region:34902984-34908825 transcript_region:SL2.40ch06:34902984..34908825- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00024691g0106.1 protein AED:0.20 eAED:0.23 QI:6|0.8|0.66|1|0.8|0.66|6|254|357 NbS00024691g0111.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|177 NbS00024691g0110.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|0|0.33|3|0|149 NbS00024691g0109.1 protein AED:0.41 eAED:0.61 QI:0|0|0|1|0|0|2|0|111 NbS00002659g0006.1 protein AED:0.09 eAED:0.09 QI:474|0.85|0.87|1|0.42|0.37|8|343|380; (*SWP) sp|Q8GXT3|BH123_ARATH (e_value=2e-24) Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1;; (*TAIR) AT3G20640.1 (e_value=2e-25) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7210654-7213199 REVERSE LENGTH=454;; (*ITAG) Solyc10g006640.2.1 (e_value=2e-82) genomic_reference:SL2.40ch10 gene_region:1145988-1149662 transcript_region:SL2.40ch10:1145988..1149662- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00038482g0014.1 protein AED:0.02 eAED:0.02 QI:187|1|1|1|1|1|3|129|92; (*TAIR) AT3G48140.1 (e_value=1e-44) | Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88;; (*ITAG) Solyc02g087330.2.1 (e_value=3e-59) genomic_reference:SL2.40ch02 gene_region:44343132-44345022 transcript_region:SL2.40ch02:44343132..44345022- functional_description:"B12D-like protein (AHRD V1 ***- D2XQY6_WOLAR); contains Interpro domain(s) IPR010530 B12D "; NbS00038482g0011.1 protein AED:0.05 eAED:0.05 QI:210|1|1|1|0.85|0.75|8|156|317; (*SWP) sp|P16924|P4HA1_CHICK (e_value=1e-30) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT3G28480.1 (e_value=4e-156) | Symbols: | Oxoglutarate/iron-dependent oxygenase | chr3:10676266-10678262 REVERSE LENGTH=316;; (*ITAG) Solyc02g067530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32274270-32278858 transcript_region:SL2.40ch02:32274270..32278858+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q9LSI6_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00038482g0017.1 protein AED:0.14 eAED:0.14 QI:228|0.87|0.8|1|0.75|0.68|25|723|1316; (*SWP) sp|Q9SRH9|SNL1_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=0.0) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g067570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32299931-32312247 transcript_region:SL2.40ch02:32299931..32312247+ go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00038482g0016.1 protein AED:0.23 eAED:0.23 QI:260|0.87|0.77|1|1|1|9|0|339; (*TAIR) AT3G28460.1 (e_value=2e-128) | Symbols: | methyltransferases | chr3:10672673-10674297 REVERSE LENGTH=314;; (*ITAG) Solyc02g067540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32280032-32283838 transcript_region:SL2.40ch02:32280032..32283838+ functional_description:"Methyltransferase (AHRD V1 *-*- B9LJG4_CHLSY); contains Interpro domain(s) IPR016065 Protein of unknown function methylase putative "; NbS00038482g0008.1 protein AED:0.12 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|161 NbS00038482g0003.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|670; (*SWP) sp|Q9SI03|MTP12_ARATH (e_value=1e-79) Metal tolerance protein 12 OS=Arabidopsis thaliana GN=MTP12 PE=2 SV=1;; (*TAIR) AT2G04620.1 (e_value=5e-152) | Symbols: | Cation efflux family protein | chr2:1610506-1612902 REVERSE LENGTH=798;; (*ITAG) Solyc02g067620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32329353-32332061 transcript_region:SL2.40ch02:32329353..32332061- go_terms:GO:0016020 functional_description:"Zinc transporter like 1 (AHRD V1 *-*- Q9JKN2_MOUSE); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00060171g0004.1 protein AED:0.18 eAED:0.18 QI:8|0.83|0.76|1|0.83|0.84|13|0|510; (*SWP) sp|Q56XP4|NHX2_ARATH (e_value=0.0) Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2;; (*TAIR) AT3G05030.1 (e_value=0.0) | Symbols: NHX2, ATNHX2 | sodium hydrogen exchanger 2 | chr3:1393456-1396784 REVERSE LENGTH=546;; (*ITAG) Solyc06g008820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2764067-2770677 transcript_region:SL2.40ch06:2764067..2770677+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q93YH2_SOLLC); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015385 NbS00009752g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|1|1|2|0|210; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=3e-31) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT1G41830.1 (e_value=3e-39) | Symbols: SKS6 | SKU5-similar 6 | chr1:15603892-15607802 REVERSE LENGTH=542;; (*ITAG) Solyc05g055490.1.1 (e_value=1e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64264942-64267983 transcript_region:SL2.40ch05:64264942..64267983+ go_terms:GO:0030599 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0030599 NbS00013529g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.4|1|0.5|0.8|5|0|507; (*SWP) sp|P25306|THD1_SOLLC (e_value=3e-118) Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=2e-79) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc09g008670.2.1 (e_value=2e-119) genomic_reference:SL2.40ch09 gene_region:2123840-2127943 transcript_region:SL2.40ch09:2123840..2127943+ go_terms:GO:0004794 functional_description:"Threonine ammonia-lyase biosynthetic (AHRD V1 **** B1XNT1_SYNP2); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0004794 NbS00017656g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.56|1|0.2|0.5|16|293|711; (*TAIR) AT1G30240.2 (e_value=1e-152) | Symbols: | unknown protein; Has 169 Blast hits to 168 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE LENGTH=827;; (*ITAG) Solyc11g007010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1497059-1505072 transcript_region:SL2.40ch11:1497059..1505072+ go_terms:GO:0005488 functional_description:"Proline-, glutamic acid- and leucine-rich protein 1 (AHRD V1 *--- PELP1_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00017656g0009.1 protein AED:0.12 eAED:0.17 QI:0|0|0|1|1|1|3|0|359; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=3e-110) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=4e-111) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc11g010810.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3828764-3830176 transcript_region:SL2.40ch11:3828764..3830176+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00017656g0014.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|3|0|203; (*SWP) sp|Q940V3|U91A1_ARATH (e_value=1e-40) UDP-glycosyltransferase 91A1 OS=Arabidopsis thaliana GN=UGT91A1 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=9e-42) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc00g227860.1.1 (e_value=3e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:19558891-19560303 transcript_region:SL2.40ch00:19558891..19560303- go_terms:GO:0008152,GO:0055114 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152,GO:0055114 NbS00017656g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|145; (*ITAG) Solyc11g010790.1.1 (e_value=5e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3804355-3805767 transcript_region:SL2.40ch11:3804355..3805767+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001464g0011.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0.66|0.75|4|0|568; (*TAIR) AT1G64870.1 (e_value=5e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831 FORWARD LENGTH=304;; (*ITAG) Solyc12g020130.1.1 (e_value=2e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14136924-14137790 transcript_region:SL2.40ch12:14136924..14137790+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001464g0010.1 protein AED:0.21 eAED:0.21 QI:227|1|1|1|0.5|0.33|3|0|253; (*TAIR) AT5G21940.1 (e_value=1e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7249446-7250353 REVERSE LENGTH=264;; (*ITAG) Solyc07g041830.2.1 (e_value=5e-92) genomic_reference:SL2.40ch07 gene_region:51493841-51498122 transcript_region:SL2.40ch07:51493841..51498122+ functional_description:"MTD1 (AHRD V1 *-*- Q9LLM3_MEDTR)"; NbS00015881g0005.1 protein AED:0.25 eAED:0.27 QI:47|0|0|0.75|1|1|4|0|331; (*ITAG) Solyc07g018060.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8977086-8979008 transcript_region:SL2.40ch07:8977086..8979008- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00015881g0004.1 protein AED:0.99 eAED:0.99 QI:0|0|0|0.33|0.5|0.66|3|0|110 NbS00018427g0001.1 protein AED:0.11 eAED:0.11 QI:80|1|0.5|1|0|0|2|0|261; (*SWP) sp|Q9XGM1|VATD_ARATH (e_value=5e-148) V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2;; (*TAIR) AT3G58730.1 (e_value=4e-149) | Symbols: | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) | chr3:21718495-21719280 REVERSE LENGTH=261;; (*ITAG) Solyc01g073690.2.1 (e_value=5e-163) genomic_reference:SL2.40ch01 gene_region:70303278-70304360 transcript_region:SL2.40ch01:70303278..70304360- go_terms:GO:0033178 functional_description:"V-type ATP synthase subunit D (AHRD V1 ***- B0WRC9_CULQU); contains Interpro domain(s) IPR002699 ATPase, V1/A1 complex, subunit D "; GO:0033178 NbS00039987g0002.1 protein AED:0.25 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|278; (*SWP) sp|O49603|CVIF2_ARATH (e_value=7e-34) Cell wall / vacuolar inhibitor of fructosidase 2 OS=Arabidopsis thaliana GN=C/VIF2 PE=1 SV=1;; (*TAIR) AT5G64620.1 (e_value=5e-35) | Symbols: C/VIF2, ATC/VIF2 | cell wall / vacuolar inhibitor of fructosidase 2 | chr5:25831875-25832417 FORWARD LENGTH=180;; (*ITAG) Solyc11g005820.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:662989-663561 transcript_region:SL2.40ch11:662989..663561- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q674_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00051690g0003.1 protein AED:0.20 eAED:0.20 QI:74|1|1|1|1|1|4|379|307; (*TAIR) AT1G50575.1 (e_value=4e-124) | Symbols: | Putative lysine decarboxylase family protein | chr1:18728862-18730296 REVERSE LENGTH=306;; (*ITAG) Solyc07g065180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64275670-64279633 transcript_region:SL2.40ch07:64275670..64279633+ go_terms:GO:0016831 functional_description:"Decarboxylase family protein (AHRD V1 ***- B6TTZ3_MAIZE); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831 NbS00031201g0007.1 protein AED:0.25 eAED:0.25 QI:165|0.75|0.77|1|0.62|0.88|9|401|560; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=1e-62) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G49050.1 (e_value=4e-159) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:18150638-18153186 FORWARD LENGTH=583;; (*ITAG) Solyc06g069190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39347730-39352677 transcript_region:SL2.40ch06:39347730..39352677- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00031201g0004.1 protein AED:0.22 eAED:0.22 QI:5|0.8|0.90|1|0.9|0.81|11|238|569; (*SWP) sp|Q38950|2AAB_ARATH (e_value=0.0) Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2;; (*TAIR) AT3G25800.1 (e_value=0.0) | Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587;; (*ITAG) Solyc06g069180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39339819-39347237 transcript_region:SL2.40ch06:39339819..39347237+ go_terms:GO:0017018,GO:0008601 functional_description:"Phosphatase 2A regulatory A subunit (AHRD V1 **** Q9S7C5_ORYSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017018,GO:0008601 NbS00028387g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|4|353|461; (*SWP) sp|A2YGR5|SPL12_ORYSI (e_value=2e-67) Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1;; (*TAIR) AT5G43270.1 (e_value=2e-56) | Symbols: SPL2 | squamosa promoter binding protein-like 2 | chr5:17360527-17362143 REVERSE LENGTH=419;; (*ITAG) Solyc05g015510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10767268-10772201 transcript_region:SL2.40ch05:10767268..10772201- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding-like protein 11 (AHRD V1 ***- B6TF72_MAIZE); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00055194g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.88|1|1|0.88|9|0|857; (*SWP) sp|Q54NA3|ATG9_DICDI (e_value=2e-90) Autophagy-related protein 9 OS=Dictyostelium discoideum GN=atg9 PE=3 SV=1;; (*TAIR) AT2G31260.1 (e_value=0.0) | Symbols: APG9, ATAPG9 | autophagy 9 (APG9) | chr2:13322291-13326293 REVERSE LENGTH=866;; (*ITAG) Solyc04g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2242377-2248072 transcript_region:SL2.40ch04:2242377..2248072- functional_description:"Autophagy-related protein 9 (AHRD V1 ***- D7FZF2_ECTSI); contains Interpro domain(s) IPR007241 Autophagy-related protein 9 "; NbS00044922g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0|0.75|1|1|4|0|169; (*SWP) sp|Q9SRH9|SNL1_ARATH (e_value=8e-47) Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2;; (*TAIR) AT3G01320.1 (e_value=6e-48) | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 FORWARD LENGTH=1372;; (*ITAG) Solyc02g067570.2.1 (e_value=4e-55) genomic_reference:SL2.40ch02 gene_region:32299931-32312247 transcript_region:SL2.40ch02:32299931..32312247+ go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00007389g0013.1 protein AED:0.16 eAED:0.17 QI:0|0.72|0.66|1|0.63|0.75|12|0|1143; (*SWP) sp|Q6BCB4|SC16B_RABIT (e_value=1e-30) Protein transport protein Sec16B OS=Oryctolagus cuniculus GN=SEC16B PE=2 SV=1;; (*TAIR) AT5G47490.1 (e_value=0.0) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1919118-1928036 transcript_region:SL2.40ch08:1919118..1928036- go_terms:GO:0032259 functional_description:"COPII coat assembly protein SEC16 (AHRD V1 *-*- C5FKS9_NANOT)"; GO:0032259 NbS00007389g0014.1 protein AED:0.28 eAED:0.31 QI:533|0.75|0.8|1|0.25|0.4|5|0|227; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-11) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G47470.1 (e_value=6e-71) | Symbols: | Nodulin MtN21 /EamA-like transporter family protein | chr5:19254598-19256378 FORWARD LENGTH=364;; (*ITAG) Solyc08g078580.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59523244-59528510 transcript_region:SL2.40ch08:59523244..59528510+ go_terms:GO:0016020,GO:0005743,GO:0005622 functional_description:"Nodulin-like protein (AHRD V1 *-*- Q9FGL0_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020,GO:0005743,GO:0005622 NbS00006558g0001.1 protein AED:0.09 eAED:0.10 QI:533|0.8|0.83|1|0.4|0.33|6|458|254; (*SWP) sp|Q05047|C72A1_CATRO (e_value=4e-93) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14640.1 (e_value=3e-104) | Symbols: CYP72A10 | cytochrome P450, family 72, subfamily A, polypeptide 10 | chr3:4919856-4921787 FORWARD LENGTH=514;; (*ITAG) Solyc10g007880.2.1 (e_value=1e-154) genomic_reference:SL2.40ch10 gene_region:2080596-2083797 transcript_region:SL2.40ch10:2080596..2083797+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00020615g0001.1 protein AED:0.28 eAED:0.40 QI:162|1|0.5|1|0|0|2|232|92; (*SWP) sp|Q9LSS7|RUBP1_ARATH (e_value=4e-27) NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2 SV=1;; (*TAIR) AT5G60190.1 (e_value=3e-28) | Symbols: | Cysteine proteinases superfamily protein | chr5:24235319-24235999 FORWARD LENGTH=226; NbC25230684g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|0.66|1|1|3|0|134; (*TAIR) AT2G40810.2 (e_value=2e-57) | Symbols: ATATG18C, ATG18C | homolog of yeast autophagy 18C | chr2:17032686-17034338 FORWARD LENGTH=393;; (*ITAG) Solyc06g048510.2.1 (e_value=3e-88) genomic_reference:SL2.40ch06 gene_region:27661455-27665948 transcript_region:SL2.40ch06:27661455..27665948+ go_terms:GO:0032266 functional_description:"WD-repeat domain phosphoinositide-interacting protein 3 (AHRD V1 **-- B6SUF7_MAIZE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0032266 NbS00059576g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|0.5|1|0|2|0|168; (*SWP) sp|O82391|JOSL_ARATH (e_value=1e-63) Josephin-like protein OS=Arabidopsis thaliana GN=At2g29640 PE=2 SV=1;; (*TAIR) AT2G29640.1 (e_value=8e-65) | Symbols: JOSL | JOSEPHIN-like protein | chr2:12671206-12673300 FORWARD LENGTH=360;; (*ITAG) Solyc09g031770.2.1 (e_value=6e-92) genomic_reference:SL2.40ch09 gene_region:23701194-23702446 transcript_region:SL2.40ch09:23701194..23702446- functional_description:"Josephin-2 (AHRD V1 ***- B6T783_MAIZE); contains Interpro domain(s) IPR006155 Machado-Joseph disease protein MJD "; NbS00049988g0006.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|0|0.5|2|0|379; (*TAIR) AT2G44380.1 (e_value=8e-47) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073820.2.1 (e_value=5e-114) genomic_reference:SL2.40ch01 gene_region:70420820-70421766 transcript_region:SL2.40ch01:70420820..70421766- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00025589g0003.1 protein AED:0.24 eAED:0.24 QI:548|1|1|1|0.90|0.91|12|583|314; (*TAIR) AT2G37940.1 (e_value=3e-180) | Symbols: AtIPCS2 | Arabidopsis Inositol phosphorylceramide synthase 2 | chr2:15877169-15879411 FORWARD LENGTH=305;; (*ITAG) Solyc09g011740.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5033862-5037954 transcript_region:SL2.40ch09:5033862..5037954+ go_terms:GO:0045140 functional_description:"Phosphatidylcholine:ceramide cholinephosphotransferase 1 (AHRD V1 *-*- SMS1_RAT)"; GO:0045140 NbS00039345g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|173; (*SWP) sp|O22845|CML5_ARATH (e_value=3e-36) Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2;; (*TAIR) AT2G43290.1 (e_value=2e-37) | Symbols: MSS3 | Calcium-binding EF-hand family protein | chr2:17991308-17991955 REVERSE LENGTH=215;; (*ITAG) Solyc07g007950.1.1 (e_value=5e-69) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:2646086-2646754 transcript_region:SL2.40ch07:2646086..2646754+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00039345g0007.1 protein AED:0.37 eAED:0.37 QI:0|1|0.8|1|1|1|5|143|281; (*TAIR) AT5G32440.3 (e_value=3e-78) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=265;; (*ITAG) Solyc07g007960.2.1 (e_value=7e-135) genomic_reference:SL2.40ch07 gene_region:2649752-2657807 transcript_region:SL2.40ch07:2649752..2657807- functional_description:"CUE domain containing protein (AHRD V1 **-- B6TIC6_MAIZE); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00000691g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|74; (*ITAG) Solyc12g088850.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62503672-62503965 transcript_region:SL2.40ch12:62503672..62503965+ go_terms:GO:0005509 functional_description:"EF hand family protein (AHRD V1 **-- B4G1S0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00000691g0001.1 protein AED:0.26 eAED:0.28 QI:0|0|0.5|1|0|0.5|2|313|88; (*ITAG) Solyc12g088840.1.1 (e_value=8e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:62498164-62498427 transcript_region:SL2.40ch12:62498164..62498427+ go_terms:GO:0005509 functional_description:"Os07g0619200 protein (Fragment) (AHRD V1 ***- Q0D4L7_ORYSJ); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00059367g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|0.75|4|0|133; (*SWP) sp|P93788|REMO_SOLTU (e_value=7e-37) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=8e-34) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc06g035920.2.1 (e_value=3e-50) genomic_reference:SL2.40ch06 gene_region:21959956-21966847 transcript_region:SL2.40ch06:21959956..21966847- go_terms:GO:0003677 functional_description:"Remorin 1 (AHRD V1 ***- Q9XEX8_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00059367g0009.1 protein AED:0.04 eAED:0.05 QI:0|0.5|0.33|1|1|1|3|0|267; (*SWP) sp|Q9M0K4|LAF1_ARATH (e_value=3e-43) Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2;; (*TAIR) AT5G52260.1 (e_value=9e-52) | Symbols: AtMYB19, MYB19 | myb domain protein 19 | chr5:21220165-21221223 FORWARD LENGTH=268;; (*ITAG) Solyc03g025870.2.1 (e_value=4e-101) genomic_reference:SL2.40ch03 gene_region:7636896-7639652 transcript_region:SL2.40ch03:7636896..7639652- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00059367g0005.1 protein AED:0.10 eAED:0.18 QI:2|0|0|1|1|0.5|2|0|70; (*ITAG) Solyc02g085010.1.1 (e_value=5e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00000406g0007.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|3|0|259; (*SWP) sp|P22242|DRPE_CRAPL (e_value=2e-98) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT1G47980.1 (e_value=2e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62730.1); Has 169 Blast hits to 169 proteins in 41 species: Archae - 0; Bacteria - 68; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17691985-17693818 REVERSE LENGTH=315;; (*ITAG) Solyc05g053350.2.1 (e_value=3e-120) genomic_reference:SL2.40ch05 gene_region:62620520-62623062 transcript_region:SL2.40ch05:62620520..62623062+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00000406g0008.1 protein AED:0.30 eAED:0.77 QI:0|0|0|0.33|1|1|3|0|109 NbS00004835g0004.1 protein AED:0.19 eAED:0.56 QI:0|0|0|1|0|0|2|0|88 NbS00001744g0011.1 protein AED:0.07 eAED:0.07 QI:251|0.75|0.6|1|0.25|0|5|127|281; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=2e-23) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G23910.1 (e_value=2e-68) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10177902-10179789 FORWARD LENGTH=304;; (*ITAG) Solyc06g061280.2.1 (e_value=1e-128) genomic_reference:SL2.40ch06 gene_region:35665755-35668469 transcript_region:SL2.40ch06:35665755..35668469- go_terms:GO:0033729 functional_description:"Cinnamoyl-CoA reductase-like protein (AHRD V1 **** Q9M0B3_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00001744g0013.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|1|2|0|220; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=6e-62) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G16770.2 (e_value=2e-71) | Symbols: AtMYB9, MYB9 | myb domain protein 9 | chr5:5515209-5516734 FORWARD LENGTH=336;; (*ITAG) Solyc08g076710.2.1 (e_value=1e-90) genomic_reference:SL2.40ch08 gene_region:57817957-57819545 transcript_region:SL2.40ch08:57817957..57819545- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q6R054_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00001744g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0|0.75|0|0|4|0|151; (*SWP) sp|Q9SZP1|MYB4_ARATH (e_value=5e-47) Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1;; (*TAIR) AT4G38620.1 (e_value=4e-48) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc01g111500.2.1 (e_value=3e-49) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00003839g0003.1 protein AED:0.03 eAED:0.03 QI:186|1|0|1|1|1|2|217|501; (*SWP) sp|O64635|C76C4_ARATH (e_value=1e-137) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=9e-139) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc06g084820.1.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37961026-37963705 transcript_region:SL2.40ch06:37961026..37963705+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00059006g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|1|1|5|0|443; (*ITAG) Solyc01g102670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83171469-83174012 transcript_region:SL2.40ch01:83171469..83174012- go_terms:GO:0006281 functional_description:"HhH-GPD (AHRD V1 *--- Q2INY1_ANADE); contains Interpro domain(s) IPR011257 DNA glycosylase "; GO:0006281 NbS00059006g0010.1 protein AED:0.33 eAED:0.33 QI:226|1|1|1|0.8|0.63|11|470|223; (*SWP) sp|P57108|GSTZ_EUPES (e_value=8e-115) Glutathione S-transferase zeta class OS=Euphorbia esula PE=2 SV=1;; (*TAIR) AT2G02390.1 (e_value=1e-102) | Symbols: ATGSTZ1, GST18, GSTZ1 | glutathione S-transferase zeta 1 | chr2:629015-630955 FORWARD LENGTH=221;; (*ITAG) Solyc01g102660.2.1 (e_value=7e-148) genomic_reference:SL2.40ch01 gene_region:83166396-83171573 transcript_region:SL2.40ch01:83166396..83171573+ go_terms:GO:0005737 functional_description:"Maleylacetoacetate isomerase / glutathione S-transferase (AHRD V1 ***- Q6MR10_BDEBA); contains Interpro domain(s) IPR005955 Maleylacetoacetate isomerase "; GO:0005737 NbS00009474g0011.1 protein AED:0.35 eAED:0.35 QI:0|0.8|0.66|1|0.6|0.83|6|0|337; (*TAIR) AT2G32760.1 (e_value=5e-99) | Symbols: | unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:13892140-13894295 FORWARD LENGTH=352;; (*ITAG) Solyc09g092030.2.1 (e_value=1e-161) genomic_reference:SL2.40ch09 gene_region:66549668-66556523 transcript_region:SL2.40ch09:66549668..66556523- functional_description:"UV radiation resistance-associated gene protein (AHRD V1 *-*- B2WJC3_PYRTR)"; NbS00009474g0008.1 protein AED:0.37 eAED:0.37 QI:231|1|1|1|0.16|0.28|7|322|215; (*SWP) sp|Q9ZTN2|ERD2_PETHY (e_value=4e-143) ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1;; (*TAIR) AT3G25040.1 (e_value=2e-137) | Symbols: ERD2B | endoplasmic reticulum retention defective 2B | chr3:9124479-9126051 FORWARD LENGTH=215;; (*ITAG) Solyc09g091900.2.1 (e_value=2e-146) genomic_reference:SL2.40ch09 gene_region:66459355-66464556 transcript_region:SL2.40ch09:66459355..66464556- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor (AHRD V1 ***- D7PF42_NICBE); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00019301g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.5|1|1|1|6|0|536; (*TAIR) AT4G09510.1 (e_value=0.0) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021312-6023310 REVERSE LENGTH=558;; (*ITAG) Solyc11g020610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11747788-11752875 transcript_region:SL2.40ch11:11747788..11752875+ go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00020851g0030.1 protein AED:0.06 eAED:0.06 QI:213|0.33|0.25|1|0.33|0.25|4|0|649; (*SWP) sp|Q8RY65|NIK2_ARATH (e_value=3e-62) Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1;; (*TAIR) AT4G22730.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:11941384-11943696 FORWARD LENGTH=688;; (*ITAG) Solyc08g079460.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60147887-60152431 transcript_region:SL2.40ch08:60147887..60152431+ go_terms:GO:0004702 functional_description:"Receptor like kinase, RLK"; GO:0004702 NbS00020851g0033.1 protein AED:0.16 eAED:0.17 QI:0|1|0.66|1|0.5|0.33|3|0|430; (*TAIR) AT1G12330.1 (e_value=4e-160) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:4194673-4196627 FORWARD LENGTH=505;; (*ITAG) Solyc08g079510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60183796-60185872 transcript_region:SL2.40ch08:60183796..60185872+ go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00020851g0023.1 protein AED:0.27 eAED:0.29 QI:148|1|0.5|1|1|1|2|0|104; (*TAIR) AT2G45360.1 (e_value=3e-39) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc08g079480.2.1 (e_value=5e-61) genomic_reference:SL2.40ch08 gene_region:60164440-60165467 transcript_region:SL2.40ch08:60164440..60165467+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00020851g0032.1 protein AED:0.33 eAED:0.33 QI:0|0.4|0.16|0.83|0.8|1|6|0|265; (*SWP) sp|O64628|TXND9_ARATH (e_value=2e-68) Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1;; (*TAIR) AT3G25580.1 (e_value=3e-81) | Symbols: | Thioredoxin superfamily protein | chr3:9292557-9294148 FORWARD LENGTH=210;; (*ITAG) Solyc11g012730.1.1 (e_value=5e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5491671-5492554 transcript_region:SL2.40ch11:5491671..5492554+ go_terms:GO:0048487 functional_description:"Thioredoxin domain-containing protein 9 (AHRD V1 ***- B5XD78_SALSA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00020851g0018.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|109; (*TAIR) AT2G45360.1 (e_value=7e-26) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc08g079480.2.1 (e_value=7e-54) genomic_reference:SL2.40ch08 gene_region:60164440-60165467 transcript_region:SL2.40ch08:60164440..60165467+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00020851g0026.1 protein AED:0.10 eAED:0.10 QI:379|1|1|1|1|1|5|245|393; (*SWP) sp|Q4P7A4|CAF17_USTMA (e_value=9e-43) Putative transferase CAF17, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CAF17 PE=3 SV=1;; (*TAIR) AT4G12130.1 (e_value=5e-176) | Symbols: | Glycine cleavage T-protein family | chr4:7263640-7265425 FORWARD LENGTH=393;; (*ITAG) Solyc08g079470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60152858-60158284 transcript_region:SL2.40ch08:60152858..60158284- go_terms:GO:0005737 functional_description:"tRNA-modifying protein ygfZ (AHRD V1 *-*- YGFZ_SALTY); contains Interpro domain(s) IPR017703 Folate-binding, YgfZ "; GO:0005737 NbS00020851g0028.1 protein AED:0.23 eAED:0.23 QI:209|1|1|1|0.83|0.71|7|419|373; (*TAIR) AT4G22740.2 (e_value=8e-62) | Symbols: | glycine-rich protein | chr4:11944050-11945565 REVERSE LENGTH=356;; (*ITAG) Solyc08g079500.2.1 (e_value=5e-158) genomic_reference:SL2.40ch08 gene_region:60170924-60173492 transcript_region:SL2.40ch08:60170924..60173492- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00020851g0037.1 protein AED:0.16 eAED:0.26 QI:0|0.33|0.25|1|0.66|0.5|4|0|538; (*SWP) sp|Q9SHV1|GLR22_ARATH (e_value=7e-117) Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1;; (*TAIR) AT2G24720.1 (e_value=5e-118) | Symbols: ATGLR2.2, GLR2.2 | glutamate receptor 2.2 | chr2:10522783-10525840 REVERSE LENGTH=920;; (*ITAG) Solyc08g006500.2.1 (e_value=1e-137) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00020851g0027.1 protein AED:0.27 eAED:0.27 QI:351|0.66|0.57|1|0.83|1|7|452|199; (*SWP) sp|Q8R035|ICT1_MOUSE (e_value=4e-23) Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Mus musculus GN=Ict1 PE=1 SV=1;; (*TAIR) AT1G62850.3 (e_value=1e-68) | Symbols: | Class I peptide chain release factor | chr1:23272608-23274211 REVERSE LENGTH=236;; (*ITAG) Solyc08g079490.2.1 (e_value=3e-84) genomic_reference:SL2.40ch08 gene_region:60166784-60170216 transcript_region:SL2.40ch08:60166784..60170216- go_terms:GO:0006415 functional_description:"Class I peptide chain release factor (AHRD V1 *-*- D5C164_NITHN); contains Interpro domain(s) IPR000352 Class I peptide chain release factor "; GO:0006415 NbS00020851g0002.1 protein AED:0.34 eAED:0.39 QI:0|0|0|1|1|1|2|0|166; (*SWP) sp|Q9FI80|PP425_ARATH (e_value=5e-28) Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1;; (*TAIR) AT5G48910.1 (e_value=4e-29) | Symbols: LPA66 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19832969-19834909 REVERSE LENGTH=646;; (*ITAG) Solyc07g066110.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64848778-64850361 transcript_region:SL2.40ch07:64848778..64850361+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00018563g0112.1 protein AED:0.21 eAED:0.21 QI:0|0.71|0.5|0.87|0.71|0.75|8|0|240 NbS00018563g0114.1 protein AED:0.28 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|249 NbS00018563g0113.1 protein AED:0.42 eAED:0.47 QI:0|0|0|1|0|0.33|3|0|84 NbS00018563g0111.1 protein AED:0.23 eAED:0.23 QI:305|0.8|0.5|1|0.8|0.83|6|0|308 NbS00040814g0002.1 protein AED:0.33 eAED:0.34 QI:0|0|0|0.75|0|0.25|4|0|276; (*ITAG) Solyc11g008310.1.1 (e_value=3e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2522011-2522808 transcript_region:SL2.40ch11:2522011..2522808+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00017697g0006.1 protein AED:0.07 eAED:0.07 QI:201|1|1|1|0.75|0.8|5|379|255; (*SWP) sp|Q0DKM4|RU1A_ORYSJ (e_value=8e-94) U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1;; (*TAIR) AT2G47580.1 (e_value=8e-93) | Symbols: U1A | spliceosomal protein U1A | chr2:19517229-19518686 FORWARD LENGTH=250;; (*ITAG) Solyc09g075200.2.1 (e_value=2e-125) genomic_reference:SL2.40ch09 gene_region:62470438-62476177 transcript_region:SL2.40ch09:62470438..62476177- go_terms:GO:0005515 functional_description:"U1 small nuclear ribonucleoprotein A (AHRD V1 ***- Q16H40_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00016770g0011.1 protein AED:0.26 eAED:0.26 QI:196|0.75|1|1|0.75|0.8|5|652|219; (*SWP) sp|O73944|PCP_PYRFU (e_value=4e-14) Pyrrolidone-carboxylate peptidase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pcp PE=1 SV=1;; (*TAIR) AT1G56700.2 (e_value=5e-116) | Symbols: | Peptidase C15, pyroglutamyl peptidase I-like | chr1:21256743-21257640 FORWARD LENGTH=219;; (*ITAG) Solyc01g100970.2.1 (e_value=2e-158) genomic_reference:SL2.40ch01 gene_region:82607558-82613025 transcript_region:SL2.40ch01:82607558..82613025+ go_terms:GO:0008233 functional_description:"Pyrrolidone-carboxylate peptidase (AHRD V1 **** B6SP89_MAIZE); contains Interpro domain(s) IPR000816 Peptidase C15, pyroglutamyl peptidase I "; GO:0008233 NbS00016770g0012.1 protein AED:0.05 eAED:0.05 QI:188|1|1|1|1|1|6|44|464; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=0.0) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G02460.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:504897-507099 REVERSE LENGTH=491;; (*ITAG) Solyc01g100980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82614300-82616929 transcript_region:SL2.40ch01:82614300..82616929- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- B6TPQ7_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00016770g0017.1 protein AED:0.25 eAED:0.29 QI:0|0.33|0.5|1|0|0|4|762|73; (*ITAG) Solyc01g100990.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:82619600-82622439 transcript_region:SL2.40ch01:82619600..82622439- go_terms:GO:0008270 functional_description:"Zinc finger matrin type 5 (AHRD V1 ***- B0S517_DANRE); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00016770g0014.1 protein AED:0.37 eAED:0.37 QI:18|0.9|0.90|1|0.7|0.81|11|610|318; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=2e-163) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1;; (*TAIR) AT3G05840.1 (e_value=9e-159) | Symbols: ATSK12 | Protein kinase superfamily protein | chr3:1740793-1742927 FORWARD LENGTH=409;; (*ITAG) Solyc01g101000.2.1 (e_value=3e-169) genomic_reference:SL2.40ch01 gene_region:82623105-82629503 transcript_region:SL2.40ch01:82623105..82629503- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7M6L5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016770g0001.1 protein AED:0.29 eAED:0.41 QI:0|0|0|1|1|1|3|0|83; (*ITAG) Solyc02g068770.2.1 (e_value=2e-31) genomic_reference:SL2.40ch02 gene_region:33264577-33268399 transcript_region:SL2.40ch02:33264577..33268399+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L30 (AHRD V1 --*- C0B6M9_9FIRM); contains Interpro domain(s) IPR005996 Ribosomal protein L30, bacterial-type "; GO:0005840,GO:0015934 NbS00016770g0018.1 protein AED:0.37 eAED:0.43 QI:193|0.66|0.75|1|0|0.5|4|0|109; (*SWP) sp|Q0JP11|C3H3_ORYSJ (e_value=1e-33) Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2;; (*TAIR) AT5G26749.1 (e_value=2e-31) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr5:9398285-9399239 REVERSE LENGTH=147;; (*ITAG) Solyc01g100990.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:82619600-82622439 transcript_region:SL2.40ch01:82619600..82622439- go_terms:GO:0008270 functional_description:"Zinc finger matrin type 5 (AHRD V1 ***- B0S517_DANRE); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00003219g0006.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0.5|2|0|59 NbS00003219g0005.1 protein AED:0.28 eAED:0.69 QI:0|0|0|1|0|0|3|0|168 NbS00045681g0007.1 protein AED:0.06 eAED:0.06 QI:63|0.75|0.6|1|0|0|5|322|317; (*TAIR) AT4G38225.1 (e_value=1e-71) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17927230-17928613 FORWARD LENGTH=363;; (*ITAG) Solyc10g074580.1.1 (e_value=2e-155) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57461549-57464651 transcript_region:SL2.40ch10:57461549..57464651- go_terms:GO:0016020 functional_description:"Aminoacylase ACY1 and related metalloexopeptidases (ISS) (AHRD V1 *-*- Q00SR9_OSTTA)"; GO:0016020 NbS00045681g0002.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|0.66|0.6|10|488|552; (*SWP) sp|A5A7I7|CDPK4_SOLTU (e_value=0.0) Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1;; (*TAIR) AT2G17290.1 (e_value=0.0) | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent protein kinase family protein | chr2:7517005-7519239 FORWARD LENGTH=544;; (*ITAG) Solyc10g074570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57454225-57458658 transcript_region:SL2.40ch10:57454225..57458658+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 6 (AHRD V1 **** B9MZ11_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00014893g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|84; (*SWP) sp|Q8VWY6|POLC1_TOBAC (e_value=9e-55) Polcalcin Nic t 1 OS=Nicotiana tabacum GN=Nict1 PE=1 SV=1;; (*TAIR) AT3G03430.1 (e_value=4e-36) | Symbols: | Calcium-binding EF-hand family protein | chr3:814481-814732 FORWARD LENGTH=83;; (*ITAG) Solyc02g091480.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47343749-47344003 transcript_region:SL2.40ch02:47343749..47344003- go_terms:GO:0005509 functional_description:"Calmodulin 4 (AHRD V1 ***- Q6WEH7_MOUSE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00014893g0007.1 protein AED:0.09 eAED:0.09 QI:307|1|1|1|1|1|7|468|388; (*SWP) sp|O82616|SCRK5_ARATH (e_value=2e-133) Putative fructokinase-5 OS=Arabidopsis thaliana GN=At4g10260 PE=2 SV=1;; (*TAIR) AT1G66430.1 (e_value=0.0) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:24778400-24780393 FORWARD LENGTH=384;; (*ITAG) Solyc02g091490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47344370-47349179 transcript_region:SL2.40ch02:47344370..47349179- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase 3 (AHRD V1 **-* Q6VWJ5_SOLLC); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0008865,GO:0008959 NbS00014893g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0.83|1|1|1|6|0|520; (*SWP) sp|Q5XF57|Y5576_ARATH (e_value=7e-65) Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1;; (*TAIR) AT5G37790.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:15008433-15011025 REVERSE LENGTH=552;; (*ITAG) Solyc02g091470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47339482-47342638 transcript_region:SL2.40ch02:47339482..47342638+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 *-** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009194g0002.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|137; (*ITAG) Solyc03g112200.1.1 (e_value=4e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:56739563-56740318 transcript_region:SL2.40ch03:56739563..56740318- functional_description:"Unknown Protein (AHRD V1)"; NbS00009194g0006.1 protein AED:0.18 eAED:0.18 QI:265|1|1|1|0.83|0.85|7|1183|458; (*TAIR) AT4G24690.1 (e_value=8e-32) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704;; (*ITAG) Solyc03g112230.2.1 (e_value=6e-157) genomic_reference:SL2.40ch03 gene_region:56747879-56752208 transcript_region:SL2.40ch03:56747879..56752208- go_terms:GO:0008270 functional_description:"ZZ type zinc finger domain-containing protein (Fragment) (AHRD V1 *--- C1GFD2_PARBD); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0008270 NbS00009194g0013.1 protein AED:0.23 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|128; (*ITAG) Solyc03g112210.1.1 (e_value=7e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:56741857-56742135 transcript_region:SL2.40ch03:56741857..56742135- functional_description:"Unknown Protein (AHRD V1)"; NbS00009194g0004.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|642; (*SWP) sp|Q9STK5|PP269_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1;; (*TAIR) AT3G48250.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17870064-17871929 REVERSE LENGTH=621;; (*ITAG) Solyc03g112190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009194g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|143; (*TAIR) AT4G24700.1 (e_value=9e-21) | Symbols: | unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12744807-12745238 REVERSE LENGTH=143;; (*ITAG) Solyc03g112190.2.1 (e_value=1e-66) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC24865086g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|163; (*ITAG) Solyc07g053680.1.1 (e_value=7e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59444350-59444996 transcript_region:SL2.40ch07:59444350..59444996- go_terms:GO:0045449 functional_description:"NAC domain-containing protein 67 (AHRD V1 ***- B6T3X1_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012320g0001.1 protein AED:0.33 eAED:0.34 QI:0|0.62|0.55|1|0.87|0.77|9|164|372; (*SWP) sp|P48980|BGAL_SOLLC (e_value=3e-138) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=5e-130) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g044880.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45685680-45691694 transcript_region:SL2.40ch12:45685680..45691694+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q546T5_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00031612g0004.1 protein AED:0.06 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|338; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=2e-65) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=1e-66) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc01g098720.2.1 (e_value=7e-163) genomic_reference:SL2.40ch01 gene_region:80910735-80912501 transcript_region:SL2.40ch01:80910735..80912501+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MJZ9_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00031612g0007.1 protein AED:0.42 eAED:0.62 QI:55|0|0.5|1|0|0|2|0|60; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=3e-29) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT5G66730.1 (e_value=4e-33) | Symbols: | C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500;; (*ITAG) Solyc02g085580.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:42989617-42992448 transcript_region:SL2.40ch02:42989617..42992448+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU5_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00023289g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|258; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-42) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*ITAG) Solyc04g016200.1.1 (e_value=4e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:6972353-6973708 transcript_region:SL2.40ch04:6972353..6973708+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 **** D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00023289g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|241; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-105) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G29730.1 (e_value=2e-54) | Symbols: UGT71D1 | UDP-glucosyl transferase 71D1 | chr2:12703652-12705055 FORWARD LENGTH=467;; (*ITAG) Solyc04g016200.1.1 (e_value=2e-154) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:6972353-6973708 transcript_region:SL2.40ch04:6972353..6973708+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 **** D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00023289g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|463; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-149) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=4e-55) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc04g008310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1986217-1987629 transcript_region:SL2.40ch04:1986217..1987629- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q2VA65_SOYBN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00031691g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|223; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=2e-37) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G09970.1 (e_value=7e-49) | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like protein kinase family protein | chr1:3252408-3255428 FORWARD LENGTH=976;; (*ITAG) Solyc04g076990.2.1 (e_value=4e-52) genomic_reference:SL2.40ch04 gene_region:59540573-59542894 transcript_region:SL2.40ch04:59540573..59542894+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00031691g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|127; (*ITAG) Solyc10g080790.1.1 (e_value=4e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61322546-61324401 transcript_region:SL2.40ch10:61322546..61324401- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00031691g0018.1 protein AED:0.35 eAED:0.36 QI:0|0.4|0.33|0.66|1|1|6|42|319; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=7e-155) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT1G07870.1 (e_value=5e-156) | Symbols: | Protein kinase superfamily protein | chr1:2429933-2431843 REVERSE LENGTH=423;; (*ITAG) Solyc11g072660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52967548-52971703 transcript_region:SL2.40ch11:52967548..52971703+ go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00031691g0013.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.25|1|1|4|0|130 NbS00031691g0017.1 protein AED:0.34 eAED:0.51 QI:0|0|0|1|0|0|3|0|133; (*ITAG) Solyc09g072730.1.1 (e_value=8e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60860048-60860654 transcript_region:SL2.40ch09:60860048..60860654- go_terms:GO:0008270 functional_description:"GRF zinc finger family protein expressed (AHRD V1 *-*- Q10CE1_ORYSJ); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00010628g0005.1 protein AED:0.13 eAED:0.28 QI:0|0.14|0.25|1|0|0.12|8|0|378; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=8e-32) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT3G47800.1 (e_value=1e-66) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:17634971-17636998 FORWARD LENGTH=358;; (*ITAG) Solyc02g087780.2.1 (e_value=4e-130) genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00051442g0001.1 protein AED:0.38 eAED:0.38 QI:119|0.5|0.66|1|0.5|0.33|3|61|115; (*ITAG) Solyc10g080670.1.1 (e_value=4e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61213437-61215170 transcript_region:SL2.40ch10:61213437..61215170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055654g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.90|1|0.9|1|11|0|435; (*SWP) sp|P37221|MAOM_SOLTU (e_value=0.0) NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT2G13560.1 (e_value=0.0) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623;; (*ITAG) Solyc08g013860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3198664-3222236 transcript_region:SL2.40ch08:3198664..3222236- go_terms:GO:0005524,GO:0008270,GO:0050897 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0005524,GO:0008270,GO:0050897 NbS00026834g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|0|1|2|0|287; (*SWP) sp|Q9FK13|PDV1_ARATH (e_value=1e-71) Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1;; (*TAIR) AT5G53280.1 (e_value=8e-73) | Symbols: PDV1 | plastid division1 | chr5:21607586-21609080 FORWARD LENGTH=272;; (*ITAG) Solyc03g007500.2.1 (e_value=6e-71) genomic_reference:SL2.40ch03 gene_region:2072899-2080497 transcript_region:SL2.40ch03:2072899..2080497- functional_description:"Unknown Protein (AHRD V1)"; NbS00002113g0001.1 protein AED:0.00 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|394; (*SWP) sp|Q00874|DR100_ARATH (e_value=1e-127) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT3G20820.1 (e_value=1e-168) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:7280930-7282027 FORWARD LENGTH=365;; (*ITAG) Solyc11g056680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45139882-45140976 transcript_region:SL2.40ch11:45139882..45140976+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00052878g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|67; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=5e-26) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=4e-27) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc05g021090.2.1 (e_value=8e-28) genomic_reference:SL2.40ch05 gene_region:26343121-26349617 transcript_region:SL2.40ch05:26343121..26349617+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00004147g0005.1 protein AED:0.09 eAED:0.14 QI:0|0|0|0.66|0.5|0.33|3|0|244; (*SWP) sp|Q9FLI0|BH120_ARATH (e_value=6e-22) Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2;; (*TAIR) AT5G51790.1 (e_value=5e-23) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21039762-21040594 FORWARD LENGTH=204;; (*ITAG) Solyc06g035490.2.1 (e_value=6e-46) genomic_reference:SL2.40ch06 gene_region:21066995-21068635 transcript_region:SL2.40ch06:21066995..21068635+ go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *-** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00018014g0010.1 protein AED:0.08 eAED:0.09 QI:0|0.6|0.33|1|0.8|0.83|6|0|371; (*SWP) sp|Q9SIV3|GLK1_ARATH (e_value=9e-14) Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2 SV=2;; (*TAIR) AT2G03500.1 (e_value=9e-43) | Symbols: | Homeodomain-like superfamily protein | chr2:1059926-1062259 FORWARD LENGTH=432;; (*ITAG) Solyc01g108300.2.1 (e_value=5e-180) genomic_reference:SL2.40ch01 gene_region:87422159-87424738 transcript_region:SL2.40ch01:87422159..87424738+ go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7LQI3_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00018014g0011.1 protein AED:0.26 eAED:0.30 QI:0|0.5|0.66|1|0.62|0.66|9|0|346; (*TAIR) AT3G19090.1 (e_value=1e-60) | Symbols: | RNA-binding protein | chr3:6601466-6603709 FORWARD LENGTH=455;; (*ITAG) Solyc01g108310.2.1 (e_value=4e-156) genomic_reference:SL2.40ch01 gene_region:87429824-87432064 transcript_region:SL2.40ch01:87429824..87432064+ go_terms:GO:0003676,GO:0000166 functional_description:"Os11g0248200 protein (Fragment) (AHRD V1 *--- Q0ITJ6_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0000166 NbS00027683g0004.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|1|1|5|0|394; (*SWP) sp|Q9SCP2|PLY12_ARATH (e_value=8e-83) Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2;; (*TAIR) AT3G53190.1 (e_value=6e-84) | Symbols: | Pectin lyase-like superfamily protein | chr3:19714171-19717537 FORWARD LENGTH=483;; (*ITAG) Solyc09g008380.2.1 (e_value=3e-147) genomic_reference:SL2.40ch09 gene_region:1844382-1849775 transcript_region:SL2.40ch09:1844382..1849775+ go_terms:GO:0016829 functional_description:"Pectate lyase-like protein (AHRD V1 **** Q56XU8_ARATH); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00061238g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0.5|0.33|3|0|554; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=8e-170) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G65550.1 (e_value=8e-165) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:26198410-26199810 REVERSE LENGTH=466;; (*ITAG) Solyc11g010760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00017450g0006.1 protein AED:0.36 eAED:0.42 QI:0|0.7|0.72|1|0.6|0.63|11|0|448; (*SWP) sp|O64816|CSK2P_ARATH (e_value=0.0) Casein kinase II subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g23070 PE=2 SV=1;; (*TAIR) AT2G23070.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:9824162-9826871 REVERSE LENGTH=432;; (*ITAG) Solyc02g064700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30373054-30382119 transcript_region:SL2.40ch02:30373054..30382119- go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3B471_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbC26263860g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|199; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=7e-70) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=5e-71) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc05g013020.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6127918-6129396 transcript_region:SL2.40ch05:6127918..6129396- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN4_PINTA); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbC26263860g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|199; (*SWP) sp|Q9LF80|GT3_ARATH (e_value=7e-70) Putative glycosyltransferase 3 OS=Arabidopsis thaliana GN=GT3 PE=2 SV=1;; (*TAIR) AT5G07720.1 (e_value=5e-71) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr5:2455757-2457130 FORWARD LENGTH=457;; (*ITAG) Solyc05g013020.1.1 (e_value=3e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6127918-6129396 transcript_region:SL2.40ch05:6127918..6129396- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN4_PINTA); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00034212g0009.1 protein AED:0.32 eAED:0.35 QI:0|0.2|0|0.83|1|1|6|0|604; (*TAIR) AT5G43490.1 (e_value=3e-16) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469256 REVERSE LENGTH=185;; (*ITAG) Solyc12g098470.1.1 (e_value=5e-161) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64302382-64313454 transcript_region:SL2.40ch12:64302382..64313454- functional_description:"At5g43490-like protein (Fragment) (AHRD V1 *-*- Q6XWB0_ARATH)"; NbS00034212g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|0.5|2|0|218; (*SWP) sp|Q9C688|RAVL3_ARATH (e_value=1e-58) AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1;; (*TAIR) AT1G51120.1 (e_value=1e-59) | Symbols: | AP2/B3 transcription factor family protein | chr1:18938091-18939149 FORWARD LENGTH=352;; (*ITAG) Solyc03g083110.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46473739-46475572 transcript_region:SL2.40ch03:46473739..46475572+ go_terms:GO:0003677,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 **** B9IMF3_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00000880g0004.1 protein AED:0.11 eAED:0.11 QI:214|1|1|1|0.75|0.6|5|380|160; (*SWP) sp|O14046|VATO_SCHPO (e_value=2e-33) Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vma16 PE=2 SV=1;; (*TAIR) AT4G32530.1 (e_value=2e-66) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr4:15693399-15694958 REVERSE LENGTH=180;; (*ITAG) Solyc06g067880.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:38458796-38460935 transcript_region:SL2.40ch06:38458796..38460935+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00056943g0002.1 protein AED:0.19 eAED:0.29 QI:223|0.5|0.66|1|0|0.33|3|2193|421; (*TAIR) AT3G63090.1 (e_value=0.0) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr3:23313617-23314831 FORWARD LENGTH=404;; (*ITAG) Solyc04g071290.2.1 (e_value=1e-57) genomic_reference:SL2.40ch04 gene_region:55811077-55818764 transcript_region:SL2.40ch04:55811077..55818764+ go_terms:GO:0016020,GO:0005622 functional_description:"Mitochondrial substrate carrier (Fragment) (AHRD V1 *-*- B3VXY3_POPTN); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0016020,GO:0005622 NbS00038262g0007.1 protein AED:0.38 eAED:0.44 QI:0|0.63|0.65|0.95|0.84|0.9|20|0|775; (*SWP) sp|Q9ZPI6|AIM1_ARATH (e_value=0.0) Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1;; (*TAIR) AT4G29010.1 (e_value=0.0) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc08g068390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54725090-54729981 transcript_region:SL2.40ch08:54725090..54729981+ go_terms:GO:0004300 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0004300 NbS00038262g0004.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|76 NbS00014047g0013.1 protein AED:0.56 eAED:0.56 QI:0|0.5|0|0.8|0.25|0.2|5|0|493; (*SWP) sp|Q9LNG5|PPP7L_ARATH (e_value=3e-38) Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana GN=At1g48120 PE=2 SV=1;; (*TAIR) AT1G48120.1 (e_value=2e-39) | Symbols: | hydrolases;protein serine/threonine phosphatases | chr1:17774238-17779624 REVERSE LENGTH=1340;; (*ITAG) Solyc12g006100.1.1 (e_value=3e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:666521-670776 transcript_region:SL2.40ch12:666521..670776+ go_terms:GO:0016787 functional_description:"Serine/threonine-protein phosphatase 4 catalytic subunit (AHRD V1 *-*- PP4C_KLULA); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; GO:0016787 NbS00014047g0014.1 protein AED:0.24 eAED:0.26 QI:0|0|0|1|0|0|5|0|611; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=8e-72) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=2e-42) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g007170.2.1 (e_value=7e-91) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00025484g0001.1 protein AED:0.38 eAED:0.62 QI:0|0|0|1|0|0|3|0|149; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-21) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021310.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00025484g0003.1 protein AED:0.40 eAED:0.47 QI:0|0|0|1|0|0|4|0|133; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-37) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021300.1.1 (e_value=9e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398023-13398556 transcript_region:SL2.40ch11:13398023..13398556+ functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00025484g0002.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|0|0|2|0|121; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-16) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc08g016000.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:6448465-6448818 transcript_region:SL2.40ch08:6448465..6448818+ functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- D7P347_SYZCU); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00011649g0008.1 protein AED:0.03 eAED:0.05 QI:0|0.62|0.55|1|0.75|0.88|9|0|371; (*TAIR) AT1G62305.1 (e_value=9e-140) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:23026989-23029189 REVERSE LENGTH=378;; (*ITAG) Solyc02g080970.2.1 (e_value=1e-174) genomic_reference:SL2.40ch02 gene_region:39615682-39621976 transcript_region:SL2.40ch02:39615682..39621976- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00011649g0002.1 protein AED:0.19 eAED:0.25 QI:0|0|0|1|1|1|3|0|275; (*SWP) sp|O65388|PLY2_ARATH (e_value=3e-48) Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2;; (*TAIR) AT1G11920.1 (e_value=2e-49) | Symbols: | Pectin lyase-like superfamily protein | chr1:4023667-4025097 REVERSE LENGTH=384;; (*ITAG) Solyc06g071840.1.1 (e_value=3e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:40644913-40648380 transcript_region:SL2.40ch06:40644913..40648380+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00036195g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|449; (*SWP) sp|Q683I9|PP295_ARATH (e_value=2e-177) Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1;; (*TAIR) AT3G62890.1 (e_value=1e-178) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23246168-23247973 FORWARD LENGTH=573;; (*ITAG) Solyc09g075170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62452108-62453457 transcript_region:SL2.40ch09:62452108..62453457+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00036195g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|1|1|3|0|431; (*SWP) sp|Q8LB72|PHR2_ARATH (e_value=4e-173) Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2;; (*TAIR) AT2G47590.1 (e_value=3e-174) | Symbols: PHR2 | photolyase/blue-light receptor 2 | chr2:19521888-19523732 FORWARD LENGTH=447;; (*ITAG) Solyc09g075180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62453539-62456934 transcript_region:SL2.40ch09:62453539..62456934- go_terms:GO:0006281 functional_description:"Cryptochrome DASH family (AHRD V1 **-- B5W072_SPIMA); contains Interpro domain(s) IPR006050 DNA photolyase, N-terminal "; GO:0006281 NbS00040438g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|371; (*SWP) sp|Q9LDE3|FBK9_ARATH (e_value=3e-94) F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1;; (*TAIR) AT1G23390.1 (e_value=2e-95) | Symbols: | Kelch repeat-containing F-box family protein | chr1:8309449-8310633 REVERSE LENGTH=394;; (*ITAG) Solyc05g005150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:135882-136994 transcript_region:SL2.40ch05:135882..136994- go_terms:GO:0005515 functional_description:"F-box/Kelch repeat-containing F-box family protein (AHRD V1 ***- C4PVT9_ARATH); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00040438g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|117; (*ITAG) Solyc01g059760.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00040438g0008.1 protein AED:0.38 eAED:0.45 QI:76|0|0|0.6|0.25|0.2|5|0|244; (*ITAG) Solyc01g094420.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00040438g0010.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|134 NbS00040438g0009.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.66|0.5|0.33|3|0|171 NbS00058256g0003.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|248; (*SWP) sp|Q9D4F2|PPAC2_MOUSE (e_value=8e-12) Presqualene diphosphate phosphatase OS=Mus musculus GN=Ppapdc2 PE=1 SV=1;; (*TAIR) AT4G22550.1 (e_value=3e-17) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr4:11878255-11878896 REVERSE LENGTH=213;; (*ITAG) Solyc08g078990.1.1 (e_value=1e-78) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:59817230-59817871 transcript_region:SL2.40ch08:59817230..59817871- go_terms:GO:0016020,GO:0003824 functional_description:"Presqualene diphosphate phosphatase B (AHRD V1 *-*- C1BJL7_OSMMO); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020,GO:0003824 NbS00005298g0004.1 protein AED:0.18 eAED:0.18 QI:245|0.75|0.8|1|0.25|0.8|5|676|387; (*SWP) sp|O22300|LET12_SOLLC (e_value=1e-154) Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1;; (*TAIR) AT5G25220.2 (e_value=7e-137) | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736208-8738087 FORWARD LENGTH=419;; (*ITAG) Solyc07g007120.2.1 (e_value=5e-156) genomic_reference:SL2.40ch07 gene_region:1876090-1882613 transcript_region:SL2.40ch07:1876090..1882613+ go_terms:GO:0005515 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 *-*- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00061321g0003.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|2|0|181; (*SWP) sp|O24248|PRU1_PRUAV (e_value=4e-45) Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1;; (*ITAG) Solyc09g090990.2.1 (e_value=2e-42) genomic_reference:SL2.40ch09 gene_region:65703511-65704905 transcript_region:SL2.40ch09:65703511..65704905- go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q43550_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00050810g0001.1 protein AED:0.78 eAED:0.86 QI:0|0|0|1|1|1|2|0|501; (*TAIR) AT5G18700.1 (e_value=8e-122) | Symbols: RUK, EMB3013 | Protein kinase family protein with ARM repeat domain | chr5:6235387-6240733 REVERSE LENGTH=1366;; (*ITAG) Solyc08g013940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3322188-3331230 transcript_region:SL2.40ch08:3322188..3331230+ go_terms:GO:0008017,GO:0016301 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NGF5_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008017,GO:0016301 NbC24838113g0001.1 protein AED:0.06 eAED:0.06 QI:13|1|0.66|1|0|0|3|0|67 NbS00001112g0011.1 protein AED:0.09 eAED:0.09 QI:17|0.4|0.33|1|0.4|0.5|6|260|893; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=7e-155) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=5e-156) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6773605-6777110 transcript_region:SL2.40ch09:6773605..6777110- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00001112g0012.1 protein AED:0.14 eAED:0.14 QI:116|0.8|0.66|1|1|1|6|386|413; (*SWP) sp|A2Y5L9|PDC1_ORYSI (e_value=1e-113) Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1;; (*TAIR) AT4G33070.1 (e_value=3e-122) | Symbols: | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | chr4:15952519-15954676 REVERSE LENGTH=607;; (*ITAG) Solyc10g076510.1.1 (e_value=1e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58830186-58832733 transcript_region:SL2.40ch10:58830186..58832733- go_terms:GO:0005515,GO:0004737 functional_description:"Pyruvate decarboxylase (AHRD V1 **** B0ZS79_PRUAR); contains Interpro domain(s) IPR012110 Pyruvate decarboxylase/indolepyruvate decarboxylase "; GO:0005515,GO:0004737 NbS00001112g0006.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|1|1|3|0|76 NbS00042926g0003.1 protein AED:0.06 eAED:0.07 QI:0|1|0.8|1|1|1|5|0|566; (*SWP) sp|Q9SQZ0|CAAT7_ARATH (e_value=6e-149) Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1;; (*TAIR) AT3G10600.1 (e_value=4e-150) | Symbols: CAT7 | cationic amino acid transporter 7 | chr3:3313969-3317162 FORWARD LENGTH=584;; (*ITAG) Solyc08g077820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58892678-58895481 transcript_region:SL2.40ch08:58892678..58895481- go_terms:GO:0015326,GO:0005289 functional_description:"Cationic amino acid transporter (AHRD V1 **** B9HVV3_POPTR); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0015326,GO:0005289 NbS00023116g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|434; (*SWP) sp|Q9FHZ1|SCL23_ARATH (e_value=6e-157) Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1;; (*TAIR) AT5G41920.1 (e_value=5e-158) | Symbols: | GRAS family transcription factor | chr5:16779982-16781199 FORWARD LENGTH=405;; (*ITAG) Solyc07g043330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54355933-54357231 transcript_region:SL2.40ch07:54355933..54357231- go_terms:GO:0042803 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IHC5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0042803 NbS00023116g0002.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|0.8|1|1|5|0|1306; (*TAIR) AT2G32240.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333;; (*ITAG) Solyc07g043320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbC25870489g0002.1 protein AED:0.65 eAED:0.65 QI:0|0|0|1|1|1|2|0|87; (*SWP) sp|Q9LV40|ROGF8_ARATH (e_value=4e-33) Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1;; (*TAIR) AT1G31650.1 (e_value=4e-41) | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide exchange factor 14 | chr1:11326474-11329767 REVERSE LENGTH=576;; (*ITAG) Solyc08g075120.2.1 (e_value=4e-48) genomic_reference:SL2.40ch08 gene_region:56435856-56442881 transcript_region:SL2.40ch08:56435856..56442881- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein (AHRD V1 ***- B6UC56_MAIZE); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00004919g0001.1 protein AED:0.29 eAED:0.29 QI:70|0|0.5|1|0|1|2|250|171; (*ITAG) Solyc08g082120.2.1 (e_value=2e-40) genomic_reference:SL2.40ch08 gene_region:62171934-62173538 transcript_region:SL2.40ch08:62171934..62173538+ functional_description:"Methanol inducible protein (AHRD V1 ***- D1MAX5_NICBE)"; NbS00004919g0002.1 protein AED:0.35 eAED:0.36 QI:0|0|0.5|1|0|0.5|2|61|174; (*ITAG) Solyc08g082130.2.1 (e_value=8e-59) genomic_reference:SL2.40ch08 gene_region:62175884-62176902 transcript_region:SL2.40ch08:62175884..62176902+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004919g0003.1 protein AED:0.04 eAED:0.04 QI:313|0.6|0.83|0.83|0.8|0.83|6|334|173; (*TAIR) AT5G41850.1 (e_value=4e-63) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:16756698-16757791 REVERSE LENGTH=224;; (*ITAG) Solyc08g082150.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62184696-62185922 transcript_region:SL2.40ch08:62184696..62185922- functional_description:"Alpha/beta hydrolase (AHRD V1 ***- D0M6M2_VIBSE)"; NbS00004919g0010.1 protein AED:0.12 eAED:0.12 QI:52|1|1|1|1|1|3|87|95; (*ITAG) Solyc08g082160.2.1 (e_value=6e-57) genomic_reference:SL2.40ch08 gene_region:62189308-62190294 transcript_region:SL2.40ch08:62189308..62190294- functional_description:"Unknown Protein (AHRD V1)"; NbS00012651g0002.1 protein AED:0.20 eAED:0.60 QI:0|0|0|1|0|0|3|0|205; (*SWP) sp|Q9SIR9|SPZ10_ARATH (e_value=2e-12) Serpin-Z10 OS=Arabidopsis thaliana GN=At2g25240 PE=2 SV=1;; (*TAIR) AT2G25240.1 (e_value=1e-13) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr2:10751872-10753134 REVERSE LENGTH=385;; (*ITAG) Solyc04g079480.2.1 (e_value=1e-27) genomic_reference:SL2.40ch04 gene_region:61543950-61545698 transcript_region:SL2.40ch04:61543950..61545698- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00012651g0109.1 protein AED:0.04 eAED:0.04 QI:21|1|0.6|1|1|1|5|0|581 NbS00012651g0111.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|1|0.33|0.25|4|0|506 NbS00012651g0103.1 protein AED:0.15 eAED:0.16 QI:0|1|0.33|1|1|1|3|0|412 NbS00012651g0209.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.5|0.87|0.57|0.62|8|0|423 NbS00004810g0004.1 protein AED:0.50 eAED:0.50 QI:206|0|0.5|0.5|1|1|2|0|74 NbS00004810g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|108 NbS00028211g0001.1 protein AED:0.36 eAED:0.43 QI:0|0.66|0.25|1|1|1|4|0|199; (*SWP) sp|Q93V72|E13L4_ARATH (e_value=9e-31) Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1;; (*TAIR) AT1G18650.1 (e_value=1e-34) | Symbols: PDCB3 | plasmodesmata callose-binding protein 3 | chr1:6419036-6420413 REVERSE LENGTH=184;; (*ITAG) Solyc05g012380.2.1 (e_value=2e-63) genomic_reference:SL2.40ch05 gene_region:5639430-5642259 transcript_region:SL2.40ch05:5639430..5642259- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00017372g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|523; (*ITAG) Solyc00g255510.1.1 (e_value=1e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20235387-20236924 transcript_region:SL2.40ch00:20235387..20236924- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00017372g0009.1 protein AED:0.20 eAED:0.20 QI:220|1|0.92|1|1|1|14|554|699; (*SWP) sp|P72749|TYPA_SYNY3 (e_value=0.0) GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=typA PE=3 SV=1;; (*TAIR) AT5G13650.2 (e_value=0.0) | Symbols: | elongation factor family protein | chr5:4397821-4402364 FORWARD LENGTH=676;; (*ITAG) Solyc03g058190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20504510-20518591 transcript_region:SL2.40ch03:20504510..20518591+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor family GTP-binding protein (AHRD V1 **** Q67QM4_SYMTH); contains Interpro domain(s) IPR006298 GTP-binding protein TypA "; GO:0005515,GO:0003746 NbS00017372g0010.1 protein AED:0.26 eAED:0.26 QI:0|1|0.6|1|1|1|5|0|314; (*SWP) sp|Q43087|PYRB2_PEA (e_value=0.0) Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum GN=PYRB2 PE=2 SV=1;; (*TAIR) AT3G20330.1 (e_value=0.0) | Symbols: PYRB | PYRIMIDINE B | chr3:7090354-7091904 REVERSE LENGTH=390;; (*ITAG) Solyc11g006350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1068921-1070054 transcript_region:SL2.40ch11:1068921..1070054- go_terms:GO:0006207,GO:0006520 functional_description:"Aspartate carbamoyltransferase (AHRD V1 ***- Q8L6B8_SOLTU); contains Interpro domain(s) IPR002082 Aspartate carbamoyltransferase, eukaryotic "; GO:0006207,GO:0006520 NbS00003166g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|0.33|1|1|1|3|0|283; (*SWP) sp|P22195|PER1_ARAHY (e_value=1e-116) Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2;; (*TAIR) AT5G05340.1 (e_value=1e-109) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc10g076210.1.1 (e_value=7e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58379010-58380144 transcript_region:SL2.40ch10:58379010..58380144- go_terms:GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00010516g0002.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|70 NbS00010516g0101.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|1|1|1|3|0|404 NbS00010516g0103.1 protein AED:0.68 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|90 NbS00010516g0102.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|107 NbS00010516g0113.1 protein AED:0.27 eAED:0.36 QI:0|0|0|1|0|0|3|0|203 NbS00010516g0112.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|163 NbS00043547g0013.1 protein AED:0.10 eAED:0.10 QI:21|0.8|0.5|1|0.6|0.66|6|0|380; (*SWP) sp|Q0WU02|MTP10_ARATH (e_value=0.0) Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1;; (*TAIR) AT1G16310.1 (e_value=0.0) | Symbols: | Cation efflux family protein | chr1:5578435-5580585 FORWARD LENGTH=428;; (*ITAG) Solyc10g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:414474-416809 transcript_region:SL2.40ch10:414474..416809- go_terms:GO:0016020 functional_description:"Cation diffusion facilitator 9 (AHRD V1 **-- Q84ND5_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00043547g0011.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|1|1|5|189|455; (*SWP) sp|Q84TJ0|PMT6_ARATH (e_value=0.0) Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1;; (*TAIR) AT3G10200.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:3157618-3160016 FORWARD LENGTH=591;; (*ITAG) Solyc10g079450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60309915-60318019 transcript_region:SL2.40ch10:60309915..60318019+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00043547g0015.1 protein AED:0.05 eAED:0.12 QI:0|0|0|1|0|0|5|0|381; (*TAIR) AT2G36430.1 (e_value=1e-11) | Symbols: | Plant protein of unknown function (DUF247) | chr2:15290211-15291557 FORWARD LENGTH=448;; (*ITAG) Solyc04g019310.1.1 (e_value=4e-134) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:11575837-11576604 transcript_region:SL2.40ch04:11575837..11576604+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00039441g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|67; (*SWP) sp|Q8LFD5|Y4323_ARATH (e_value=2e-14) Uncharacterized protein At4g13230 OS=Arabidopsis thaliana GN=At4g13230 PE=2 SV=1;; (*TAIR) AT4G13230.1 (e_value=1e-15) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr4:7675841-7676629 REVERSE LENGTH=120;; (*ITAG) Solyc09g061960.2.1 (e_value=3e-33) genomic_reference:SL2.40ch09 gene_region:56425281-56426627 transcript_region:SL2.40ch09:56425281..56426627- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- Q2HV86_MEDTR); contains Interpro domain(s) IPR008611 Enterobacterial EspB "; NbS00004358g0008.1 protein AED:0.16 eAED:0.16 QI:676|0.8|0.5|1|1|0.83|6|0|958; (*SWP) sp|Q8GXJ4|GLR34_ARATH (e_value=0.0) Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2;; (*TAIR) AT1G05200.2 (e_value=0.0) | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor 3.4 | chr1:1505642-1509002 FORWARD LENGTH=959;; (*ITAG) Solyc07g052400.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58244679-58248190 transcript_region:SL2.40ch07:58244679..58248190+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9GU66_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00019626g0014.1 protein AED:0.30 eAED:0.33 QI:0|0.69|0.64|0.92|0.46|0.42|14|8|547; (*SWP) sp|Q80YA3|DDHD1_MOUSE (e_value=1e-21) Phospholipase DDHD1 OS=Mus musculus GN=Ddhd1 PE=2 SV=1;; (*TAIR) AT1G31480.1 (e_value=7e-162) | Symbols: SGR2 | shoot gravitropism 2 (SGR2) | chr1:11266225-11271527 FORWARD LENGTH=933;; (*ITAG) Solyc01g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2428752-2446906 transcript_region:SL2.40ch01:2428752..2446906+ go_terms:GO:0008970 functional_description:"DDHD domain containing 1 (AHRD V1 *--- Q3ZAU5_RAT); contains Interpro domain(s) IPR004177 DDHD "; GO:0008970 NbS00019626g0016.1 protein AED:0.41 eAED:0.41 QI:0|0.25|0|0.4|0.5|0.6|5|0|224; (*TAIR) AT1G31480.1 (e_value=1e-48) | Symbols: SGR2 | shoot gravitropism 2 (SGR2) | chr1:11266225-11271527 FORWARD LENGTH=933;; (*ITAG) Solyc01g008320.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:2428752-2446906 transcript_region:SL2.40ch01:2428752..2446906+ go_terms:GO:0008970 functional_description:"DDHD domain containing 1 (AHRD V1 *--- Q3ZAU5_RAT); contains Interpro domain(s) IPR004177 DDHD "; GO:0008970 NbS00019626g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.8|0.72|0.81|1|1|11|0|328; (*SWP) sp|Q9SGE9|SYFB_ARATH (e_value=6e-179) Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1;; (*TAIR) AT1G72550.2 (e_value=3e-180) | Symbols: | tRNA synthetase beta subunit family protein | chr1:27319999-27323908 REVERSE LENGTH=584;; (*ITAG) Solyc01g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2409381-2422710 transcript_region:SL2.40ch01:2409381..2422710- go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase beta chain (AHRD V1 **** B6SHI1_MAIZE); contains Interpro domain(s) IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic "; GO:0005515,GO:0004826 NbS00019626g0003.1 protein AED:0.89 eAED:0.95 QI:0|0|0|0.28|1|1|7|0|229; (*SWP) sp|Q9SGE9|SYFB_ARATH (e_value=4e-94) Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1;; (*TAIR) AT1G72550.1 (e_value=3e-95) | Symbols: | tRNA synthetase beta subunit family protein | chr1:27319947-27323908 REVERSE LENGTH=598;; (*ITAG) Solyc01g008310.2.1 (e_value=5e-132) genomic_reference:SL2.40ch01 gene_region:2409381-2422710 transcript_region:SL2.40ch01:2409381..2422710- go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase beta chain (AHRD V1 **** B6SHI1_MAIZE); contains Interpro domain(s) IPR004531 Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic "; GO:0005515,GO:0004826 NbS00024760g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|344; (*SWP) sp|Q9LSW9|ATL16_ARATH (e_value=1e-81) RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1;; (*TAIR) AT5G43420.1 (e_value=1e-82) | Symbols: | RING/U-box superfamily protein | chr5:17451790-17452917 FORWARD LENGTH=375;; (*ITAG) Solyc09g089890.1.1 (e_value=4e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64853281-64854330 transcript_region:SL2.40ch09:64853281..64854330- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001564g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|341; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=5e-51) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=4e-52) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc07g053410.2.1 (e_value=4e-80) genomic_reference:SL2.40ch07 gene_region:59175771-59176716 transcript_region:SL2.40ch07:59175771..59176716+ functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00025097g0004.1 protein AED:0.00 eAED:0.00 QI:144|1|1|1|1|1|2|200|87; (*SWP) sp|P21616|AVP_VIGRR (e_value=7e-14) Pyrophosphate-energized vacuolar membrane proton pump OS=Vigna radiata var. radiata PE=1 SV=3;; (*TAIR) AT1G15690.2 (e_value=2e-13) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=642;; (*ITAG) Solyc03g117480.2.1 (e_value=6e-16) genomic_reference:SL2.40ch03 gene_region:60677249-60682108 transcript_region:SL2.40ch03:60677249..60682108- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (AHRD V1 **** C7HW54_9FIRM); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00025097g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|0.5|1|0|0|2|0|199; (*SWP) sp|Q9SN23|LBD38_ARATH (e_value=7e-54) LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1;; (*TAIR) AT3G49940.1 (e_value=5e-55) | Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247;; (*ITAG) Solyc04g077990.2.1 (e_value=4e-115) genomic_reference:SL2.40ch04 gene_region:60452312-60453322 transcript_region:SL2.40ch04:60452312..60453322+ functional_description:"LOB domain protein 38 (AHRD V1 *-*- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00047575g0004.1 protein AED:0.28 eAED:0.28 QI:0|0.25|0.2|0.4|0.5|0.8|5|0|98; (*SWP) sp|P26360|ATPG3_IPOBA (e_value=2e-35) ATP synthase subunit gamma, mitochondrial OS=Ipomoea batatas GN=ATPC PE=1 SV=2;; (*TAIR) AT2G33040.1 (e_value=1e-34) | Symbols: ATP3 | gamma subunit of Mt ATP synthase | chr2:14018978-14021047 REVERSE LENGTH=325;; (*ITAG) Solyc03g115110.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:58968179-58972603 transcript_region:SL2.40ch03:58968179..58972603- go_terms:GO:0005515 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B9SZS3_RICCO); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0005515 NbS00019632g0001.1 protein AED:0.28 eAED:0.42 QI:560|1|0.83|1|0.8|0.66|6|0|714; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=9e-36) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT4G32250.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15570285-15572528 REVERSE LENGTH=611;; (*ITAG) Solyc01g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00019632g0008.1 protein AED:0.11 eAED:0.11 QI:315|0.5|0.33|1|0|0.33|3|0|691; (*TAIR) AT4G32190.1 (e_value=2e-130) | Symbols: | Myosin heavy chain-related protein | chr4:15545052-15547689 FORWARD LENGTH=783;; (*ITAG) Solyc08g022030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:10722614-10726999 transcript_region:SL2.40ch08:10722614..10726999- functional_description:"AT4G32190-like protein (Fragment) (AHRD V1 *-*- D6PRA9_9BRAS)"; NbS00012222g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.2|1|0.75|0.6|5|0|544; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.2 (e_value=0.0) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063061 REVERSE LENGTH=626;; (*ITAG) Solyc04g078990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61201799-61205926 transcript_region:SL2.40ch04:61201799..61205926- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00012222g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.2|1|0.5|0.4|5|0|536; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.2 (e_value=0.0) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063061 REVERSE LENGTH=626;; (*ITAG) Solyc04g078980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61195605-61198619 transcript_region:SL2.40ch04:61195605..61198619- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00051958g0004.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|237; (*SWP) sp|Q9AR19|GCN5_ARATH (e_value=3e-51) Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1;; (*TAIR) AT3G54610.1 (e_value=2e-52) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045400.1.1 (e_value=1e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00029147g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|118 NbS00003104g0012.1 protein AED:0.48 eAED:0.96 QI:0|0|0|0.75|1|1|4|0|119 NbS00003104g0007.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|87 NbS00014817g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|144; (*SWP) sp|P52837|F4ST_FLACH (e_value=3e-54) Flavonol 4'-sulfotransferase OS=Flaveria chlorifolia PE=1 SV=1;; (*TAIR) AT3G45070.1 (e_value=4e-55) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16486378-16487349 REVERSE LENGTH=323;; (*ITAG) Solyc05g011870.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5089129-5090127 transcript_region:SL2.40ch05:5089129..5090127- go_terms:GO:0050294 functional_description:"Steroid sulfotransferase 3 (AHRD V1 **** O82410_BRANA); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0050294 NbS00002102g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.84|0.42|0.92|0.92|0.85|14|0|702; (*TAIR) AT4G17140.3 (e_value=0.0) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00002102g0014.1 protein AED:0.08 eAED:0.12 QI:81|0.33|0.25|1|0.53|0.56|16|0|2046; (*SWP) sp|Q709C8|VP13C_HUMAN (e_value=9e-20) Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1;; (*TAIR) AT4G17140.3 (e_value=0.0) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00002102g0013.1 protein AED:0.13 eAED:0.13 QI:39|1|0.6|1|1|1|5|0|242; (*TAIR) AT4G17140.2 (e_value=2e-105) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4218;; (*ITAG) Solyc08g077500.2.1 (e_value=8e-144) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00039986g0005.1 protein AED:0.24 eAED:0.24 QI:15|0.81|0.83|1|0.90|0.91|12|324|419; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=2e-59) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT1G17370.1 (e_value=0.0) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419;; (*ITAG) Solyc07g042180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52516019-52522887 transcript_region:SL2.40ch07:52516019..52522887- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **** A8N215_COPC7); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00043456g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|450; (*SWP) sp|Q56TU4|METK1_DAUCA (e_value=0.0) S-adenosylmethionine synthase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1;; (*TAIR) AT3G17390.1 (e_value=0.0) | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine synthetase family protein | chr3:5952484-5953665 REVERSE LENGTH=393;; (*ITAG) Solyc01g101060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbC26266782g0001.1 protein AED:0.25 eAED:0.25 QI:277|1|1|1|0.5|0.66|3|192|156; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=1e-28) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1;; (*TAIR) AT1G54570.1 (e_value=1e-29) | Symbols: | Esterase/lipase/thioesterase family protein | chr1:20380649-20384953 REVERSE LENGTH=704;; (*ITAG) Solyc01g098110.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:80465152-80480438 transcript_region:SL2.40ch01:80465152..80480438+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0003824 NbS00007198g0017.1 protein AED:0.36 eAED:0.37 QI:0|0.28|0.12|0.75|0.28|0.37|8|0|548; (*SWP) sp|Q41342|ETR1_SOLLC (e_value=0.0) Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1;; (*TAIR) AT1G66340.1 (e_value=0.0) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00007198g0016.1 protein AED:0.46 eAED:0.46 QI:0|1|0|1|0|0|2|0|130; (*SWP) sp|O48929|ETR1_TOBAC (e_value=5e-77) Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1;; (*TAIR) AT1G66340.1 (e_value=1e-55) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=2e-77) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00007198g0003.1 protein AED:0.52 eAED:0.52 QI:0|0.57|0.62|0.87|1|1|8|0|258; (*TAIR) AT3G14450.1 (e_value=1e-74) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc12g011340.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4183346-4190442 transcript_region:SL2.40ch12:4183346..4190442+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *-*- D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00007198g0011.1 protein AED:0.16 eAED:0.16 QI:46|1|1|1|1|1|2|44|219; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=7e-108) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=3e-104) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc12g011310.1.1 (e_value=4e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4159705-4160917 transcript_region:SL2.40ch12:4159705..4160917- functional_description:"Glutathione S-transferase (AHRD V1 ***- Q0PN10_9FABA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00009286g0009.1 protein AED:0.10 eAED:0.10 QI:187|1|0.75|1|1|1|8|0|952; (*SWP) sp|O24371|LOX31_SOLTU (e_value=0.0) Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1;; (*TAIR) AT1G17420.1 (e_value=0.0) | Symbols: LOX3 | lipoxygenase 3 | chr1:5977512-5981384 FORWARD LENGTH=919;; (*ITAG) Solyc03g122340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64271710-64276163 transcript_region:SL2.40ch03:64271710..64276163+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q96574_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00009286g0002.1 protein AED:0.21 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|169; (*TAIR) AT1G63980.1 (e_value=2e-31) | Symbols: | D111/G-patch domain-containing protein | chr1:23740646-23743054 FORWARD LENGTH=391;; (*ITAG) Solyc08g081580.2.1 (e_value=4e-89) genomic_reference:SL2.40ch08 gene_region:61757506-61762501 transcript_region:SL2.40ch08:61757506..61762501+ go_terms:GO:0005622 functional_description:"Pin2-interacting protein X1 (AHRD V1 *--- C1BXV6_ESOLU); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00009286g0012.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.66|0.5|0.33|3|0|64 NbC26305628g0005.1 protein AED:0.22 eAED:0.22 QI:134|0.66|0.75|1|1|1|4|307|171; (*SWP) sp|O23515|RL151_ARATH (e_value=5e-82) 60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1;; (*TAIR) AT4G16720.1 (e_value=4e-83) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204;; (*ITAG) Solyc06g060400.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:34803093-34805179 transcript_region:SL2.40ch06:34803093..34805179- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbC26305628g0009.1 protein AED:0.28 eAED:0.28 QI:195|0.92|0.92|1|0.53|0.5|14|1171|338; (*SWP) sp|Q7XJS0|ASHR1_ARATH (e_value=3e-146) Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2;; (*TAIR) AT2G17900.1 (e_value=3e-147) | Symbols: SDG37 | SET domain group 37 | chr2:7773420-7776675 REVERSE LENGTH=480;; (*ITAG) Solyc06g060390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34795174-34802925 transcript_region:SL2.40ch06:34795174..34802925+ go_terms:GO:0005515 functional_description:"SET and MYND domain-containing protein 3 (AHRD V1 ***- B5X414_SALSA); contains Interpro domain(s) IPR001214 SET "; GO:0005515 NbS00021255g0004.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|4|0|120; (*SWP) sp|Q9STY6|RS202_ARATH (e_value=6e-57) 40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1;; (*TAIR) AT3G47370.3 (e_value=4e-58) | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:17453671-17454437 REVERSE LENGTH=122;; (*ITAG) Solyc01g096590.2.1 (e_value=7e-57) genomic_reference:SL2.40ch01 gene_region:79418198-79420477 transcript_region:SL2.40ch01:79418198..79420477- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10 (AHRD V1 ***- RS10_CAMFF); contains Interpro domain(s) IPR005729 Ribosomal protein S10, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00045129g0003.1 protein AED:0.18 eAED:0.18 QI:102|1|1|1|1|1|2|201|374; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=3e-138) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=2e-139) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00016284g0007.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|152; (*ITAG) Solyc09g011910.2.1 (e_value=2e-26) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00016284g0008.1 protein AED:0.23 eAED:0.31 QI:0|0|0|1|0|0.66|3|0|274; (*TAIR) AT5G01140.1 (e_value=7e-13) | Symbols: | Protein of unknown function (DUF674) | chr5:49891-51437 FORWARD LENGTH=473;; (*ITAG) Solyc09g011910.2.1 (e_value=8e-115) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00016284g0002.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|93; (*TAIR) AT3G09110.1 (e_value=1e-13) | Symbols: | Protein of unknown function (DUF674) | chr3:2794850-2795963 REVERSE LENGTH=343;; (*ITAG) Solyc09g011910.2.1 (e_value=3e-36) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00016284g0009.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|78; (*ITAG) Solyc09g011910.2.1 (e_value=7e-20) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00005638g0002.1 protein AED:0.13 eAED:0.13 QI:355|1|0.91|1|0.81|0.75|12|199|425; (*SWP) sp|Q86B00|GLNA1_DICDI (e_value=4e-61) Type-1 glutamine synthetase 1 OS=Dictyostelium discoideum GN=glnA1 PE=3 SV=1;; (*TAIR) AT3G53180.1 (e_value=0.0) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62894379-62902328 transcript_region:SL2.40ch10:62894379..62902328- go_terms:GO:0008152,GO:0005524,GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0008152,GO:0005524,GO:0006807,GO:0003824 NbS00005638g0012.1 protein AED:0.18 eAED:0.18 QI:20|0.75|0.8|1|0.5|0.4|5|0|379; (*SWP) sp|Q9ZQA3|PME15_ARATH (e_value=4e-138) Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1;; (*TAIR) AT2G36710.1 (e_value=3e-139) | Symbols: | Pectin lyase-like superfamily protein | chr2:15389614-15391200 REVERSE LENGTH=407;; (*ITAG) Solyc10g083810.1.1 (e_value=6e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62889530-62892035 transcript_region:SL2.40ch10:62889530..62892035+ go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9MTJ5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00005638g0013.1 protein AED:0.21 eAED:0.22 QI:257|0.85|0.76|1|0.75|0.76|21|0|925; (*TAIR) AT2G36720.1 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain | chr2:15393447-15399189 FORWARD LENGTH=1007;; (*ITAG) Solyc10g083800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62877321-62887944 transcript_region:SL2.40ch10:62877321..62887944+ go_terms:GO:0008270 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--- B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00005638g0105.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.88|1|1|1|9|338|524 NbS00005638g0106.1 protein AED:0.30 eAED:0.30 QI:158|1|1|1|0.83|0.85|7|519|233 NbS00005638g0207.1 protein AED:0.14 eAED:0.14 QI:188|0.90|0.91|1|1|1|12|380|954 NbS00005638g0209.1 protein AED:0.26 eAED:0.38 QI:0|0|0|1|0|0|3|0|117 NbS00005638g0208.1 protein AED:0.45 eAED:0.67 QI:0|0|0|1|0|0|2|0|66 NbS00017721g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|139; (*TAIR) AT2G44310.1 (e_value=2e-64) | Symbols: | Calcium-binding EF-hand family protein | chr2:18309285-18309713 FORWARD LENGTH=142;; (*ITAG) Solyc01g073710.2.1 (e_value=2e-90) genomic_reference:SL2.40ch01 gene_region:70324522-70325265 transcript_region:SL2.40ch01:70324522..70325265+ go_terms:GO:0005509 functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7LKY8_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00017721g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|514; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=5e-26) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT4G25835.1 (e_value=1e-128) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13136117-13137637 FORWARD LENGTH=506;; (*ITAG) Solyc01g073700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70318683-70320465 transcript_region:SL2.40ch01:70318683..70320465+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00002924g0001.1 protein AED:0.18 eAED:0.18 QI:442|1|0.8|1|1|1|5|1097|296; (*TAIR) AT1G10040.1 (e_value=7e-81) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3276108-3278464 REVERSE LENGTH=412;; (*ITAG) Solyc04g077180.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59691995-59697855 transcript_region:SL2.40ch04:59691995..59697855- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 **-- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbS00032364g0004.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.33|1|1|3|0|106; (*ITAG) Solyc12g044970.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00032364g0002.1 protein AED:0.85 eAED:0.85 QI:0|0|0|0.33|1|1|3|0|82 NbS00032364g0006.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0|0.66|0.5|0.33|3|0|198; (*SWP) sp|Q9LXV5|NFYA1_ARATH (e_value=6e-28) Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1;; (*TAIR) AT5G12840.4 (e_value=4e-29) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=271;; (*ITAG) Solyc10g079150.1.1 (e_value=8e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60080390-60082273 transcript_region:SL2.40ch10:60080390..60082273- go_terms:GO:0005634 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-*- B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634 NbS00006342g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|373; (*SWP) sp|Q16842|SIA4B_HUMAN (e_value=3e-16) CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Homo sapiens GN=ST3GAL2 PE=2 SV=1;; (*TAIR) AT1G08280.1 (e_value=3e-139) | Symbols: | Glycosyltransferase family 29 (sialyltransferase) family protein | chr1:2608408-2609604 FORWARD LENGTH=398;; (*ITAG) Solyc06g074370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42387611-42388780 transcript_region:SL2.40ch06:42387611..42388780- go_terms:GO:0030173 functional_description:"Alpha-2 3-sialyltransferase (AHRD V1 ***- Q702S2_TAKRU); contains Interpro domain(s) IPR012163 Sialyltransferase "; GO:0030173 NbS00054357g0005.1 protein AED:0.13 eAED:0.13 QI:220|0.8|0.66|1|0.8|0.83|6|161|182; (*SWP) sp|Q9DAA6|EXOS1_MOUSE (e_value=3e-33) Exosome complex component CSL4 OS=Mus musculus GN=Exosc1 PE=2 SV=1;; (*TAIR) AT5G38890.1 (e_value=3e-85) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:15569507-15570898 FORWARD LENGTH=191;; (*ITAG) Solyc04g050480.2.1 (e_value=8e-119) genomic_reference:SL2.40ch04 gene_region:46434035-46440645 transcript_region:SL2.40ch04:46434035..46440645- go_terms:GO:0005515 functional_description:"3-5 exoribonuclease CSL4 (AHRD V1 ***- B6T1M3_MAIZE); contains Interpro domain(s) IPR019495 Exosome complex, component CSL4 "; GO:0005515 NbS00019993g0003.1 protein AED:0.40 eAED:0.40 QI:0|0.25|0|0.4|1|1|5|0|221; (*TAIR) AT1G48090.1 (e_value=3e-83) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009350.2.1 (e_value=7e-124) genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)"; NbS00007216g0004.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|217; (*SWP) sp|Q9FGK5|RAA5A_ARATH (e_value=7e-128) Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1;; (*TAIR) AT5G47520.1 (e_value=5e-129) | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277596-19278366 REVERSE LENGTH=221;; (*ITAG) Solyc11g012460.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5297608-5298810 transcript_region:SL2.40ch11:5297608..5298810+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00023521g0009.1 protein AED:0.42 eAED:0.42 QI:0|0.33|0.42|0.85|1|1|7|73|206; (*TAIR) AT1G19140.1 (e_value=2e-69) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). | chr1:6611026-6612414 REVERSE LENGTH=311;; (*ITAG) Solyc07g042150.2.1 (e_value=5e-86) genomic_reference:SL2.40ch07 gene_region:52451433-52457664 transcript_region:SL2.40ch07:52451433..52457664- go_terms:GO:0005515 functional_description:"Ubiquinone biosynthesis protein COQ9 mitochondrial (AHRD V1 ***- C1BL51_OSMMO); contains Interpro domain(s) IPR012762 Ubiquinone biosynthesis protein COQ9 "; GO:0005515 NbS00023521g0011.1 protein AED:0.33 eAED:0.34 QI:0|0|0|1|0|0|2|0|336; (*SWP) sp|Q9FK33|PP427_ARATH (e_value=5e-126) Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1;; (*TAIR) AT5G50390.1 (e_value=4e-127) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701;; (*ITAG) Solyc07g042130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52436398-52440018 transcript_region:SL2.40ch07:52436398..52440018+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MQ71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00023521g0012.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|2|0|224; (*SWP) sp|Q9FK33|PP427_ARATH (e_value=5e-75) Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1;; (*TAIR) AT5G50390.1 (e_value=4e-76) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701;; (*ITAG) Solyc07g042130.2.1 (e_value=8e-121) genomic_reference:SL2.40ch07 gene_region:52436398-52440018 transcript_region:SL2.40ch07:52436398..52440018+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MQ71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00023521g0010.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|174; (*SWP) sp|Q9FK33|PP427_ARATH (e_value=2e-21) Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1;; (*TAIR) AT5G50390.1 (e_value=2e-22) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701;; (*ITAG) Solyc07g042130.2.1 (e_value=8e-92) genomic_reference:SL2.40ch07 gene_region:52436398-52440018 transcript_region:SL2.40ch07:52436398..52440018+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MQ71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00052576g0004.1 protein AED:0.91 eAED:0.91 QI:7|0|0|0.5|1|1|2|101|32 NbS00013276g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|103; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00000746g0011.1 protein AED:0.11 eAED:0.11 QI:118|0.62|0.77|0.88|0.62|0.77|9|390|374; (*TAIR) AT1G65270.1 (e_value=4e-79) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:24241855-24244504 FORWARD LENGTH=292;; (*ITAG) Solyc04g047720.2.1 (e_value=1e-109) genomic_reference:SL2.40ch04 gene_region:35092083-35101575 transcript_region:SL2.40ch04:35092083..35101575+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061085g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|310; (*TAIR) AT5G64260.1 (e_value=4e-131) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc04g074470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58047154-58048083 transcript_region:SL2.40ch04:58047154..58048083+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00039395g0007.1 protein AED:0.15 eAED:0.17 QI:0|0.5|0|1|0.25|0.2|5|0|918; (*SWP) sp|Q9SGP2|HSL1_ARATH (e_value=9e-165) Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1;; (*TAIR) AT5G25930.1 (e_value=0.0) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr5:9050880-9053978 FORWARD LENGTH=1005;; (*ITAG) Solyc08g066210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51851957-51855494 transcript_region:SL2.40ch08:51851957..51855494- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00039395g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.71|0.85|1|1|7|295|573; (*SWP) sp|Q54J73|PAP_DICDI (e_value=2e-89) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT4G32850.9 (e_value=0.0) | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15850134-15854351 FORWARD LENGTH=745;; (*ITAG) Solyc08g066200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51839180-51851039 transcript_region:SL2.40ch08:51839180..51851039+ go_terms:GO:0005515,GO:0004652 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region "; GO:0005515,GO:0004652 NbS00010680g0010.1 protein AED:0.02 eAED:0.02 QI:220|1|1|1|1|1|5|288|466; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=0.0) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=0.0) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00010680g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|1|0.75|4|0|217; (*SWP) sp|Q769F9|TMEDA_DICDI (e_value=3e-26) Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1;; (*TAIR) AT3G22845.1 (e_value=5e-123) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214;; (*ITAG) Solyc03g005270.2.1 (e_value=6e-135) genomic_reference:SL2.40ch03 gene_region:155120-160534 transcript_region:SL2.40ch03:155120..160534- go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00034018g0004.1 protein AED:0.28 eAED:0.28 QI:21|0.33|0|0.75|1|0.75|4|0|164 NbS00020183g0007.1 protein AED:0.11 eAED:0.11 QI:270|1|1|1|0.66|0.42|7|452|310; (*SWP) sp|Q28G05|SYF2_XENTR (e_value=4e-29) Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1;; (*TAIR) AT2G16860.1 (e_value=5e-150) | Symbols: | GCIP-interacting family protein | chr2:7304139-7305959 REVERSE LENGTH=298;; (*ITAG) Solyc10g055640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52588098-52594877 transcript_region:SL2.40ch10:52588098..52594877- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor syf2 (AHRD V1 ***- D0MQW6_PHYIN); contains Interpro domain(s) IPR013260 mRNA splicing factor SYF2 "; GO:0005515 NbS00020183g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.25|1|0.66|0.75|4|359|254; (*SWP) sp|P93004|PIP27_ARATH (e_value=2e-146) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=1e-147) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc10g055630.1.1 (e_value=4e-171) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52582972-52584379 transcript_region:SL2.40ch10:52582972..52584379+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W506_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00006434g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|126 NbS00006434g0009.1 protein AED:0.05 eAED:0.05 QI:150|0.8|0.5|1|1|1|6|0|380; (*TAIR) AT3G52110.2 (e_value=2e-77) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages. | chr3:19323925-19325632 REVERSE LENGTH=334;; (*ITAG) Solyc01g087080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73777030-73779472 transcript_region:SL2.40ch01:73777030..73779472+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039372g0009.1 protein AED:0.23 eAED:0.25 QI:0|0|0.5|1|0|0|2|0|127; (*ITAG) Solyc07g064210.2.1 (e_value=8e-27) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00039372g0012.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0.5|2|0|129; (*ITAG) Solyc07g064210.2.1 (e_value=7e-24) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00051729g0001.1 protein AED:0.36 eAED:0.36 QI:35|0.5|0.33|1|1|1|3|0|87; (*ITAG) Solyc08g008040.2.1 (e_value=9e-16) genomic_reference:SL2.40ch08 gene_region:2534141-2538271 transcript_region:SL2.40ch08:2534141..2538271+ functional_description:"rRNA-processing protein UTP23 homolog (AHRD V1 *--- D3PH70_9MAXI); contains Interpro domain(s) IPR006984 Protein of unknown function DUF652 "; NbS00061891g0005.1 protein AED:0.19 eAED:0.19 QI:315|0.66|0.71|1|0.66|0.57|7|209|133; (*SWP) sp|Q9C9G4|ENDO2_ARATH (e_value=2e-57) Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1;; (*TAIR) AT1G68290.1 (e_value=1e-58) | Symbols: ENDO 2 | endonuclease 2 | chr1:25596718-25598264 FORWARD LENGTH=290;; (*ITAG) Solyc05g009430.2.1 (e_value=7e-75) genomic_reference:SL2.40ch05 gene_region:3608430-3611465 transcript_region:SL2.40ch05:3608430..3611465+ go_terms:GO:0000014,GO:0043765 functional_description:"Endonuclease (AHRD V1 **** A5A339_SOYBN); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00061891g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|1|0|0|4|0|211; (*TAIR) AT5G50740.3 (e_value=2e-22) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:20635983-20637970 REVERSE LENGTH=290;; (*ITAG) Solyc05g009440.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3611825-3613677 transcript_region:SL2.40ch05:3611825..3613677- go_terms:GO:0005507 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 **-- Q7XG81_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00003167g0004.1 protein AED:0.20 eAED:0.22 QI:958|0.7|0.81|1|0.8|0.72|11|600|437; (*SWP) sp|Q05758|ILV5_ARATH (e_value=0.0) Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2;; (*TAIR) AT3G58610.3 (e_value=0.0) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc12g010840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3773065-3778565 transcript_region:SL2.40ch12:3773065..3778565+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D7LW57_ARALY); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00000338g0008.1 protein AED:0.35 eAED:0.36 QI:118|0.83|0.76|1|0.58|0.69|13|0|477; (*SWP) sp|P0AC75|KDTA_ECOLI (e_value=6e-52) 3-deoxy-D-manno-octulosonic-acid transferase OS=Escherichia coli (strain K12) GN=waaA PE=3 SV=1;; (*TAIR) AT5G03770.1 (e_value=1e-175) | Symbols: KDTA | KDO transferase A | chr5:995191-997622 FORWARD LENGTH=447;; (*ITAG) Solyc10g083710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62797919-62805976 transcript_region:SL2.40ch10:62797919..62805976+ go_terms:GO:0005975 functional_description:"3-deoxy-D-manno-octulosonic acid transferase-like protein (AHRD V1 ***- Q8VZA5_ARATH); contains Interpro domain(s) IPR007507 Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal "; GO:0005975 NbS00000338g0007.1 protein AED:0.30 eAED:0.53 QI:59|0|0|1|0.33|0.25|4|0|435 NbS00018912g0007.1 protein AED:0.12 eAED:0.55 QI:0|0|0|1|0|0|2|0|59 NbS00015281g0007.1 protein AED:0.19 eAED:0.19 QI:770|0.8|0.83|1|0.8|0.66|6|0|307; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=2e-59) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G01850.1 (e_value=4e-137) | Symbols: | Protein kinase superfamily protein | chr5:332829-334180 FORWARD LENGTH=333;; (*ITAG) Solyc09g018060.2.1 (e_value=1e-171) genomic_reference:SL2.40ch09 gene_region:12708472-12715748 transcript_region:SL2.40ch09:12708472..12715748- go_terms:GO:0030544,GO:0050321,GO:0005547,GO:0000287,GO:0005524,GO:0005176,GO:0005251,GO:0008094,GO:0042803,GO:0050681,GO:0031625,GO:0004716,GO:0015271,GO:0005017,GO:0003779,GO:0005128 functional_description:"Receptor tyrosine-protein kinase erbB-4 (AHRD V1 **** ERBB4_RAT); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0030544,GO:0050321,GO:0005547,GO:0000287,GO:0005524,GO:0005176,GO:0005251,GO:0008094,GO:0042803,GO:0050681,GO:0031625,GO:0004716,GO:0015271,GO:0005017,GO:0003779,GO:0005128 NbS00049787g0005.1 protein AED:0.15 eAED:0.15 QI:395|0.90|0.91|1|0.81|0.75|12|420|473; (*SWP) sp|P0C7Q8|DA1_ARATH (e_value=0.0) Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1;; (*TAIR) AT1G19270.1 (e_value=0.0) | Symbols: DA1 | DA1 | chr1:6663327-6665845 FORWARD LENGTH=532;; (*ITAG) Solyc04g079840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61750755-61758176 transcript_region:SL2.40ch04:61750755..61758176+ go_terms:GO:0043130 functional_description:"LIM domain-binding protein (AHRD V1 *--* B0WXP3_CULQU); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0043130 NbS00021672g0006.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.2|1|1|5|0|203 NbS00021672g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|318; (*TAIR) AT1G07310.1 (e_value=7e-43) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:2247775-2248833 REVERSE LENGTH=352;; (*ITAG) Solyc09g082950.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64034680-64035654 transcript_region:SL2.40ch09:64034680..64035654+ functional_description:"C2 domain-containing protein-like (AHRD V1 *--- Q8W0F9_ORYSJ); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00038084g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.6|0.33|1|0.8|0.83|6|0|434; (*SWP) sp|Q6NKS1|P2C65_ARATH (e_value=8e-115) Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana GN=At5g01700 PE=2 SV=1;; (*TAIR) AT5G01700.2 (e_value=6e-116) | Symbols: | Protein phosphatase 2C family protein | chr5:260848-262492 REVERSE LENGTH=382;; (*ITAG) Solyc10g085370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63896009-63899267 transcript_region:SL2.40ch10:63896009..63899267- go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- A6NA79_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00039162g0001.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|378; (*SWP) sp|Q8GXH3|OSB2_ARATH (e_value=2e-80) Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2;; (*TAIR) AT4G20010.1 (e_value=1e-81) | Symbols: PTAC9, OSB2 | plastid transcriptionally active 9 | chr4:10842128-10843989 FORWARD LENGTH=371;; (*ITAG) Solyc09g007430.1.1 (e_value=3e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:997388-998551 transcript_region:SL2.40ch09:997388..998551- go_terms:GO:0003697 functional_description:"Mitochondrial SBP40 (AHRD V1 **-- Q58J68_SOLTU); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003697 NbS00020026g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|0.66|0|0|3|0|85; (*TAIR) AT4G17610.1 (e_value=1e-25) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=1e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00006620g0013.1 protein AED:0.32 eAED:0.32 QI:481|1|1|1|0.25|0.2|5|295|218; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=1e-58) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G38895.2 (e_value=1e-62) | Symbols: | RING/U-box superfamily protein | chr5:15571321-15573315 FORWARD LENGTH=296;; (*ITAG) Solyc02g065720.2.1 (e_value=3e-130) genomic_reference:SL2.40ch02 gene_region:31449550-31459193 transcript_region:SL2.40ch02:31449550..31459193+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00006620g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|1|1|4|360|357; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc02g065740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31468669-31471190 transcript_region:SL2.40ch02:31468669..31471190- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (UDP-forming) (AHRD V1 **-* Q2HV87_MEDTR); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00041977g0003.1 protein AED:0.10 eAED:0.10 QI:336|1|1|1|0.4|0.5|6|223|312; (*SWP) sp|P37707|B2_DAUCA (e_value=2e-102) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G42050.1 (e_value=4e-113) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:16815630-16816932 FORWARD LENGTH=349;; (*ITAG) Solyc08g008370.2.1 (e_value=5e-156) genomic_reference:SL2.40ch08 gene_region:2794832-2797936 transcript_region:SL2.40ch08:2794832..2797936- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00013067g0003.1 protein AED:0.26 eAED:0.26 QI:384|0.87|0.88|1|0.75|0.66|9|0|571; (*SWP) sp|Q94II3|PMTL_ARATH (e_value=0.0) Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1;; (*TAIR) AT4G19120.2 (e_value=0.0) | Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600;; (*ITAG) Solyc08g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:361626-365816 transcript_region:SL2.40ch08:361626..365816- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q5VRG9_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00000345g0004.1 protein AED:0.14 eAED:0.14 QI:93|1|1|1|1|1|7|265|373; (*SWP) sp|Q55G91|U160_DICDI (e_value=5e-105) UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1;; (*TAIR) AT5G41970.1 (e_value=0.0) | Symbols: | Metal-dependent protein hydrolase | chr5:16791198-16792961 FORWARD LENGTH=373;; (*ITAG) Solyc11g020870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:12821495-12827341 transcript_region:SL2.40ch11:12821495..12827341- functional_description:"MYG1 protein (AHRD V1 **-- Q58D33_BOVIN); contains Interpro domain(s) IPR003226 Metal-dependent protein hydrolase "; NbS00015848g0105.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|197 NbS00015848g0103.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|132 NbS00015848g0102.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|105 NbS00003331g0002.1 protein AED:0.22 eAED:0.22 QI:57|0.5|0.2|1|0|0.2|5|0|358; (*SWP) sp|Q9C7N5|GDL14_ARATH (e_value=2e-81) GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1;; (*TAIR) AT1G29660.1 (e_value=2e-82) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10371955-10373624 FORWARD LENGTH=364;; (*ITAG) Solyc03g005910.2.1 (e_value=2e-132) genomic_reference:SL2.40ch03 gene_region:614359-618748 transcript_region:SL2.40ch03:614359..618748+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00003331g0003.1 protein AED:0.10 eAED:0.30 QI:40|0|0|1|0|0|5|0|219; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=3e-47) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072750.1.1 (e_value=6e-90) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53043911-53044939 transcript_region:SL2.40ch11:53043911..53044939- go_terms:GO:0005975 functional_description:"Chitinase a (AHRD V1 ***- Q7M1R1_9ASPA); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00003762g0002.1 protein AED:0.13 eAED:0.19 QI:0|0|0|1|0|0|4|0|166; (*TAIR) AT1G09157.1 (e_value=3e-35) | Symbols: | Protein of unknown function (DUF679) | chr1:2951665-2952396 REVERSE LENGTH=243;; (*ITAG) Solyc05g007920.2.1 (e_value=1e-71) genomic_reference:SL2.40ch05 gene_region:2350007-2351451 transcript_region:SL2.40ch05:2350007..2351451+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00026572g0001.1 protein AED:0.20 eAED:0.20 QI:360|0|0.5|1|0|0.5|2|0|250; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=1e-47) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=1e-48) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc01g005130.2.1 (e_value=2e-128) genomic_reference:SL2.40ch01 gene_region:124758-125782 transcript_region:SL2.40ch01:124758..125782+ go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00004403g0002.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|584; (*ITAG) Solyc05g010170.1.1 (e_value=3e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4359591-4360127 transcript_region:SL2.40ch05:4359591..4360127- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C1HCS6_PARBA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00032075g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|281; (*TAIR) AT4G35690.1 (e_value=3e-41) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083000.1.1 (e_value=2e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00032075g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|271; (*TAIR) AT4G35690.1 (e_value=2e-38) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083050.1.1 (e_value=1e-147) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41193246-41194061 transcript_region:SL2.40ch02:41193246..41194061+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00032075g0016.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|143; (*TAIR) AT2G17080.1 (e_value=2e-22) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263;; (*ITAG) Solyc02g083000.1.1 (e_value=4e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00032075g0001.1 protein AED:0.31 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|132; (*ITAG) Solyc02g083020.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41169845-41170705 transcript_region:SL2.40ch02:41169845..41170705+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00032075g0015.1 protein AED:0.45 eAED:0.45 QI:47|0.5|0.66|0.66|0|0.33|3|0|82 NbS00055338g0002.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|0.66|0.5|0.33|3|0|122; (*TAIR) AT2G47710.1 (e_value=4e-40) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc05g054270.2.1 (e_value=1e-65) genomic_reference:SL2.40ch05 gene_region:63371493-63373042 transcript_region:SL2.40ch05:63371493..63373042+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00002474g0015.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|0.75|0.8|5|36|446; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=2e-120) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=2e-121) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc10g076320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58564773-58567879 transcript_region:SL2.40ch10:58564773..58567879+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- A6NA79_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00002474g0020.1 protein AED:0.05 eAED:0.05 QI:151|1|1|1|0.85|0.87|8|529|668; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=0.0) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1;; (*TAIR) AT5G01720.1 (e_value=0.0) | Symbols: | RNI-like superfamily protein | chr5:267118-270391 REVERSE LENGTH=665;; (*ITAG) Solyc10g076290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58549205-58554411 transcript_region:SL2.40ch10:58549205..58554411+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 3 (AHRD V1 ***- FBL3_ARATH); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00002474g0018.1 protein AED:0.13 eAED:0.13 QI:210|1|1|1|0.71|0.87|8|120|503; (*SWP) sp|F4KGN5|S40A2_ARATH (e_value=0.0) Solute carrier family 40 member 2 OS=Arabidopsis thaliana GN=IREG2 PE=2 SV=1;; (*TAIR) AT5G03570.2 (e_value=0.0) | Symbols: IREG2 | iron regulated 2 | chr5:904514-906593 FORWARD LENGTH=512;; (*ITAG) Solyc10g076280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58524396-58528172 transcript_region:SL2.40ch10:58524396..58528172+ go_terms:GO:0016021 functional_description:"Solute carrier family 40 member 1 (AHRD V1 **-- S40A1_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016021 NbS00002474g0012.1 protein AED:0.20 eAED:0.20 QI:212|1|1|1|0.95|0.95|23|552|1349; (*SWP) sp|Q93YQ1|RTOR1_ARATH (e_value=0.0) Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1;; (*TAIR) AT3G08850.1 (e_value=0.0) | Symbols: RAPTOR1B, ATRAPTOR1B, RAPTOR1 | HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344;; (*ITAG) Solyc09g014780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6917876-6935366 transcript_region:SL2.40ch09:6917876..6935366+ go_terms:GO:0032403 functional_description:"WD-repeat protein mip1 (AHRD V1 *--- C5FLG0_NANOT); contains Interpro domain(s) IPR004083 Regulatory associated protein of TOR "; GO:0032403 NbS00002474g0022.1 protein AED:0.15 eAED:0.15 QI:187|1|1|1|0|0.33|3|198|197; (*SWP) sp|D7LBN4|CSPLH_ARALL (e_value=1e-41) CASP-like protein ARALYDRAFT_321547 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_321547 PE=3 SV=1;; (*TAIR) AT2G38480.1 (e_value=7e-42) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16110960-16111694 REVERSE LENGTH=188;; (*ITAG) Solyc10g076300.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58555375-58556718 transcript_region:SL2.40ch10:58555375..58556718- functional_description:"UPF0497 membrane protein At2g38480 (AHRD V1 ***- U497C_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00012116g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|205; (*TAIR) AT1G21010.1 (e_value=1e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7346239-7346871 FORWARD LENGTH=210;; (*ITAG) Solyc04g082960.1.1 (e_value=1e-70) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:64017682-64018245 transcript_region:SL2.40ch04:64017682..64018245+ functional_description:"TMV response-related protein (AHRD V1 *--- B6UGH4_MAIZE)"; NbS00012116g0003.1 protein AED:0.33 eAED:0.33 QI:217|1|0.75|1|0.66|0.5|4|0|231; (*TAIR) AT1G21000.2 (e_value=1e-102) | Symbols: | PLATZ transcription factor family protein | chr1:7338013-7339088 FORWARD LENGTH=243;; (*ITAG) Solyc08g076860.2.1 (e_value=1e-79) genomic_reference:SL2.40ch08 gene_region:57934691-57936808 transcript_region:SL2.40ch08:57934691..57936808- go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **** D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00007600g0009.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.04|0.83|0.88|25|0|918; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=0.0) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=0.0) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57309377-57340774 transcript_region:SL2.40ch03:57309377..57340774+ go_terms:GO:0016773 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- D2V0W7_NAEGR); contains Interpro domain(s) IPR015519 Ataxia-Telangiectasia Mutated "; GO:0016773 NbS00058259g0001.1 protein AED:0.01 eAED:0.03 QI:0|1|0.5|1|0|0|2|0|85; (*ITAG) Solyc01g017870.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25832943-25833870 transcript_region:SL2.40ch01:25832943..25833870- functional_description:"Unknown Protein (AHRD V1)"; NbS00058562g0005.1 protein AED:0.30 eAED:0.32 QI:0|0.77|0.8|1|0.88|0.7|10|0|734; (*SWP) sp|Q8L7S8|RH3_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2;; (*TAIR) AT5G26742.2 (e_value=0.0) | Symbols: emb1138 | DEAD box RNA helicase (RH3) | chr5:9285540-9288871 REVERSE LENGTH=748;; (*ITAG) Solyc08g042050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:28924706-28934844 transcript_region:SL2.40ch08:28924706..28934844+ go_terms:GO:0004004,GO:0017151 functional_description:"DEAD-box ATP-dependent RNA helicase 3 (AHRD V1 **** RH3_ORYSJ); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0017151 NbS00058562g0003.1 protein AED:0.63 eAED:0.88 QI:0|0|0|0.66|1|1|3|0|90 NbS00023494g0001.1 protein AED:0.37 eAED:0.73 QI:0|0|0|1|0|0|2|0|80; (*SWP) sp|Q75HP9|AKT2_ORYSJ (e_value=6e-25) Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1;; (*TAIR) AT4G22200.1 (e_value=1e-25) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=7e-29) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00056353g0008.1 protein AED:0.25 eAED:0.25 QI:0|0.92|0.85|1|0.92|0.92|14|0|554; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=0.0) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=0.0) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc01g095970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00056353g0002.1 protein AED:0.29 eAED:0.30 QI:32|0.66|0.5|1|1|1|4|0|174; (*SWP) sp|O64792|PIGP_ARATH (e_value=3e-41) Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1;; (*TAIR) AT2G39445.1 (e_value=1e-54) | Symbols: | Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit | chr2:16470025-16471125 REVERSE LENGTH=181;; (*ITAG) Solyc00g127870.2.1 (e_value=2e-95) genomic_reference:SL2.40ch00 gene_region:16693547-16696720 transcript_region:SL2.40ch00:16693547..16696720+ functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase subunit P (AHRD V1 ***- B6TUG3_MAIZE); contains Interpro domain(s) IPR013717 PIG-P "; NbC25918271g0003.1 protein AED:0.85 eAED:0.85 QI:2|0|0|0.33|1|1|3|148|26 NbS00006011g0001.1 protein AED:0.17 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|309; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-25) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58900.1 (e_value=7e-100) | Symbols: | Homeodomain-like transcriptional regulator | chr5:23783275-23784667 REVERSE LENGTH=288;; (*ITAG) Solyc06g076770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44075004-44077090 transcript_region:SL2.40ch06:44075004..44077090+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 *--* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00006011g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.77|1|1|1|9|0|598; (*SWP) sp|Q23892|GLUA_DICDI (e_value=4e-79) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT3G47000.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:17313811-17316539 REVERSE LENGTH=608;; (*ITAG) Solyc06g076780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44079224-44083374 transcript_region:SL2.40ch06:44079224..44083374- go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbS00006011g0115.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.62|1|0.85|0.75|8|0|1128 NbS00006011g0116.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.2|0.75|0.8|5|0|259 NbS00006011g0201.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|115 NbS00006011g0207.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|490 NbS00004994g0002.1 protein AED:0.21 eAED:0.23 QI:104|0|0.5|1|0|0.5|2|0|158; (*TAIR) AT1G16790.1 (e_value=2e-27) | Symbols: | ribosomal protein-related | chr1:5744638-5745072 FORWARD LENGTH=144;; (*ITAG) Solyc12g099960.1.1 (e_value=3e-72) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65240733-65241203 transcript_region:SL2.40ch12:65240733..65241203+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004994g0008.1 protein AED:0.23 eAED:0.26 QI:182|0.5|0.71|1|0.83|0.71|7|0|232; (*TAIR) AT2G06025.1 (e_value=2e-39) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:2350231-2351898 FORWARD LENGTH=288;; (*ITAG) Solyc12g099940.1.1 (e_value=6e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65228592-65234661 transcript_region:SL2.40ch12:65228592..65234661+ go_terms:GO:0008152 functional_description:"Gcn5-related n-acetyltransferase family protein (AHRD V1 *-*- C1FD65_9CHLO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00049942g0008.1 protein AED:0.57 eAED:0.70 QI:0|0|0|0.5|0.33|0.5|4|0|95; (*SWP) sp|Q8GUM5|NICA_ARATH (e_value=2e-27) Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1;; (*TAIR) AT3G52640.2 (e_value=1e-28) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr3:19515078-19520290 REVERSE LENGTH=705;; (*ITAG) Solyc11g011480.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4526911-4536134 transcript_region:SL2.40ch11:4526911..4536134- go_terms:GO:0031177,GO:0016021 functional_description:"Nicastrin (AHRD V1 ***- A8JFJ5_CHLRE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0031177,GO:0016021 NbS00049942g0007.1 protein AED:0.00 eAED:0.00 QI:226|1|0.66|1|0.5|0.66|3|0|64; (*TAIR) AT3G02860.2 (e_value=1e-23) | Symbols: | zinc ion binding | chr3:625299-627157 REVERSE LENGTH=313; NbS00049942g0009.1 protein AED:0.33 eAED:0.39 QI:46|0.8|0.33|0.83|0.8|0.66|6|0|265; (*TAIR) AT3G02860.2 (e_value=6e-31) | Symbols: | zinc ion binding | chr3:625299-627157 REVERSE LENGTH=313;; (*ITAG) Solyc11g011490.1.1 (e_value=1e-94) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:4539053-4542055 transcript_region:SL2.40ch11:4539053..4542055+ functional_description:"CTV.12 (AHRD V1 ***- Q8H6R5_PONTR)"; NbS00021160g0001.1 protein AED:0.28 eAED:0.28 QI:206|0.71|0.75|1|0.85|0.87|8|0|356; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=2e-14) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT5G56190.1 (e_value=1e-158) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441;; (*ITAG) Solyc09g098330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67447770-67454617 transcript_region:SL2.40ch09:67447770..67454617- functional_description:"WD-repeat protein-like (AHRD V1 ***- Q8LG28_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002715g0002.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|2|0|428; (*ITAG) Solyc03g082770.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46188149-46189117 transcript_region:SL2.40ch03:46188149..46189117- go_terms:GO:0009664 functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00002715g0012.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|1|1|2|0|302 NbS00002715g0010.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|185; (*ITAG) Solyc03g082790.2.1 (e_value=8e-22) genomic_reference:SL2.40ch03 gene_region:46195532-46196454 transcript_region:SL2.40ch03:46195532..46196454- functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbS00039918g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.83|0.84|1|0.83|0.92|13|624|403; (*SWP) sp|Q8BYR1|LCMT2_MOUSE (e_value=4e-55) Leucine carboxyl methyltransferase 2 OS=Mus musculus GN=Lcmt2 PE=2 SV=4;; (*TAIR) AT1G02100.1 (e_value=3e-175) | Symbols: | Leucine carboxyl methyltransferase | chr1:389876-392448 FORWARD LENGTH=332;; (*ITAG) Solyc01g090280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75702635-75713819 transcript_region:SL2.40ch01:75702635..75713819- go_terms:GO:0003880 functional_description:"Leucine carboxyl methyltransferase family protein (AHRD V1 **** D7KP37_ARALY); contains Interpro domain(s) IPR016651 Leucine carboxyl methyltransferase, LCTM1 1 "; GO:0003880 NbS00019967g0009.1 protein AED:0.06 eAED:0.06 QI:10|1|1|1|1|1|3|99|270; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=2e-70) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=2e-74) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc06g083900.2.1 (e_value=9e-98) genomic_reference:SL2.40ch06 gene_region:45486135-45487260 transcript_region:SL2.40ch06:45486135..45487260- go_terms:GO:0005515,GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B2CZJ1_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00019967g0006.1 protein AED:0.07 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|158; (*ITAG) Solyc12g042580.1.1 (e_value=4e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:43386346-43387582 transcript_region:SL2.40ch12:43386346..43387582+ go_terms:GO:0009055 functional_description:"Blue copper-like protein (AHRD V1 *-*- B8Y8A0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00007621g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|443; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-153) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=8e-70) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g007490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1761848-1763179 transcript_region:SL2.40ch11:1761848..1763179- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00003292g0004.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0.25|1|0.33|0.75|4|0|900; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=0.0) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.1 (e_value=0.0) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16641146 REVERSE LENGTH=810;; (*ITAG) Solyc08g008190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2654348-2657240 transcript_region:SL2.40ch08:2654348..2657240- go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00023940g0003.1 protein AED:0.20 eAED:0.20 QI:116|1|1|1|1|1|2|735|285; (*SWP) sp|Q8LAU9|GATA1_ARATH (e_value=9e-40) GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2;; (*TAIR) AT3G24050.1 (e_value=7e-41) | Symbols: GATA1 | GATA transcription factor 1 | chr3:8686060-8687462 FORWARD LENGTH=274;; (*ITAG) Solyc09g091250.2.1 (e_value=4e-114) genomic_reference:SL2.40ch09 gene_region:65895466-65898011 transcript_region:SL2.40ch09:65895466..65898011+ go_terms:GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00012698g0009.1 protein AED:0.12 eAED:0.12 QI:96|1|1|1|1|1|2|289|166; (*ITAG) Solyc06g007610.2.1 (e_value=5e-48) genomic_reference:SL2.40ch06 gene_region:1605025-1606614 transcript_region:SL2.40ch06:1605025..1606614- go_terms:GO:0003824 functional_description:"Early tobacco anther 1 (AHRD V1 ***- Q84XA0_TOBAC)"; GO:0003824 NbS00012698g0012.1 protein AED:0.31 eAED:0.75 QI:0|0|0|0.75|0.33|0.25|4|0|326; (*ITAG) Solyc01g094420.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00012698g0013.1 protein AED:0.87 eAED:0.89 QI:0|0|0|0.2|0.75|0.8|5|0|171 NbS00012698g0014.1 protein AED:0.09 eAED:0.79 QI:59|0|0|1|0|0|2|0|137 NbS00051961g0001.1 protein AED:0.17 eAED:0.17 QI:188|1|0.5|1|0|0|2|0|448; (*TAIR) AT1G52380.1 (e_value=2e-94) | Symbols: | NUP50 (Nucleoporin 50 kDa) protein | chr1:19509979-19511301 FORWARD LENGTH=440;; (*ITAG) Solyc03g120280.1.1 (e_value=1e-178) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62781048-62782397 transcript_region:SL2.40ch03:62781048..62782397+ go_terms:GO:0005643,GO:0046907 functional_description:"RAN binding protein 3 (AHRD V1 *-*- Q6DJQ7_XENTR); contains Interpro domain(s) IPR000156 Ran Binding Protein 1 "; GO:0005643,GO:0046907 NbS00051961g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.69|0.66|1|0.86|0.83|24|390|994; (*SWP) sp|Q9C827|COB22_ARATH (e_value=0.0) Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1;; (*TAIR) AT1G52360.1 (e_value=0.0) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc03g120270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62768790-62778357 transcript_region:SL2.40ch03:62768790..62778357+ go_terms:GO:0005080,GO:0016286 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- C5FJ65_NANOT); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0005080,GO:0016286 NbS00016125g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|4|0|668; (*SWP) sp|Q9M0R2|PATL5_ARATH (e_value=3e-135) Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2;; (*TAIR) AT4G09160.1 (e_value=3e-136) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr4:5839761-5842158 FORWARD LENGTH=668;; (*ITAG) Solyc11g051160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:42742933-42744970 transcript_region:SL2.40ch11:42742933..42744970+ functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C5JFB2_AJEDS); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; NbS00010178g0004.1 protein AED:0.35 eAED:0.36 QI:249|0.77|0.7|1|0.77|0.8|10|0|271; (*TAIR) AT1G28100.2 (e_value=7e-100) | Symbols: | unknown protein; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9802120-9803981 FORWARD LENGTH=282;; (*ITAG) Solyc12g041880.1.1 (e_value=4e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40939472-40942882 transcript_region:SL2.40ch12:40939472..40942882+ functional_description:"Homology to unknown gene (AHRD V1 **-- Q00SZ3_OSTTA)"; NbS00056086g0004.1 protein AED:0.13 eAED:0.13 QI:169|1|0.83|1|1|0.83|6|0|488; (*TAIR) AT1G79910.1 (e_value=1e-63) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:30055050-30057011 FORWARD LENGTH=381;; (*ITAG) Solyc03g120120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62663803-62666863 transcript_region:SL2.40ch03:62663803..62666863+ functional_description:"IST1 homolog (AHRD V1 *--- D3PJN2_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00019310g0021.1 protein AED:0.34 eAED:0.39 QI:0|0.43|0.35|0.76|0.5|0.64|17|0|784; (*SWP) sp|Q56X46|MSL2_ARATH (e_value=6e-156) Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1;; (*TAIR) AT5G10490.2 (e_value=8e-158) | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836 REVERSE LENGTH=645;; (*ITAG) Solyc04g076300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58808337-58816333 transcript_region:SL2.40ch04:58808337..58816333- go_terms:GO:0005216 functional_description:"Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS "; GO:0005216 NbS00019310g0013.1 protein AED:0.39 eAED:0.42 QI:0|0.3|0|0.90|0.4|0.45|11|0|603; (*SWP) sp|Q56X46|MSL2_ARATH (e_value=6e-111) Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1;; (*TAIR) AT5G10490.2 (e_value=2e-112) | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3303836 REVERSE LENGTH=645;; (*ITAG) Solyc04g076300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58808337-58816333 transcript_region:SL2.40ch04:58808337..58816333- go_terms:GO:0005216 functional_description:"Transporter small conductance mechanosensitive ion channel (MscS) family (AHRD V1 *-** A7ZLG1_ECO24); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS "; GO:0005216 NbS00019310g0022.1 protein AED:0.25 eAED:0.29 QI:0|0.75|0.69|0.92|0.66|0.76|13|206|599; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=3e-82) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT4G24530.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr4:12667424-12669713 REVERSE LENGTH=519;; (*ITAG) Solyc04g076290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58803687-58807939 transcript_region:SL2.40ch04:58803687..58807939+ functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00019310g0024.1 protein AED:0.28 eAED:0.29 QI:66|0.6|0.33|0.66|0.6|0.83|6|0|104; (*TAIR) AT2G22540.1 (e_value=1e-12) | Symbols: SVP, AGL22 | K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240;; (*ITAG) Solyc04g076280.2.1 (e_value=2e-32) genomic_reference:SL2.40ch04 gene_region:58796626-58802678 transcript_region:SL2.40ch04:58796626..58802678+ go_terms:GO:0003700 functional_description:"MPF2-like (Fragment) (AHRD V1 ***- A8QYX1_9SOLA); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700 NbS00019310g0002.1 protein AED:0.39 eAED:0.39 QI:0|0.66|0.5|1|1|1|4|0|193; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-25) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT4G24530.1 (e_value=3e-93) | Symbols: | O-fucosyltransferase family protein | chr4:12667424-12669713 REVERSE LENGTH=519;; (*ITAG) Solyc04g076290.2.1 (e_value=7e-116) genomic_reference:SL2.40ch04 gene_region:58803687-58807939 transcript_region:SL2.40ch04:58803687..58807939+ functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00019310g0008.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|127; (*SWP) sp|Q39065|COPT1_ARATH (e_value=2e-23) Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2;; (*TAIR) AT5G59030.1 (e_value=1e-24) | Symbols: COPT1 | copper transporter 1 | chr5:23833945-23834457 REVERSE LENGTH=170;; (*ITAG) Solyc08g006250.1.1 (e_value=3e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:927731-928198 transcript_region:SL2.40ch08:927731..928198+ go_terms:GO:0015089 functional_description:"Copper transporter (AHRD V1 **** A9PEN3_POPTR); contains Interpro domain(s) IPR007274 Ctr copper transporter "; GO:0015089 NbS00019310g0017.1 protein AED:0.38 eAED:0.51 QI:282|1|0.8|1|0|0.2|5|0|110; (*TAIR) AT5G65470.1 (e_value=4e-30) | Symbols: | O-fucosyltransferase family protein | chr5:26172432-26174904 FORWARD LENGTH=504;; (*ITAG) Solyc04g076290.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:58803687-58807939 transcript_region:SL2.40ch04:58803687..58807939+ functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00052233g0007.1 protein AED:0.11 eAED:0.21 QI:0|0.75|0.6|1|0.25|0.4|5|98|243; (*SWP) sp|P07150|ANXA1_RAT (e_value=9e-36) Annexin A1 OS=Rattus norvegicus GN=Anxa1 PE=1 SV=2;; (*TAIR) AT5G10230.1 (e_value=4e-21) | Symbols: ANNAT7, ANN7 | annexin 7 | chr5:3209738-3211396 REVERSE LENGTH=316;; (*ITAG) Solyc04g078820.2.1 (e_value=2e-23) genomic_reference:SL2.40ch04 gene_region:61081296-61085434 transcript_region:SL2.40ch04:61081296..61085434+ go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- B3TLL7_ELAGV); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00052233g0006.1 protein AED:0.16 eAED:0.16 QI:207|0.8|0.81|1|0.6|0.54|11|418|341; (*SWP) sp|Q9LHA4|VA0D2_ARATH (e_value=0.0) V-type proton ATPase subunit d2 OS=Arabidopsis thaliana GN=VHA-D2 PE=2 SV=1;; (*TAIR) AT3G28715.1 (e_value=0.0) | Symbols: | ATPase, V0/A0 complex, subunit C/D | chr3:10778025-10780350 FORWARD LENGTH=351;; (*ITAG) Solyc10g081530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61897645-61902538 transcript_region:SL2.40ch10:61897645..61902538- go_terms:GO:0033179,GO:0033177 functional_description:"V-type proton ATPase subunit d 1 (AHRD V1 ***- D3PHZ2_9MAXI); contains Interpro domain(s) IPR016727 ATPase, V0 complex, subunit D "; GO:0033179,GO:0033177 NbS00015643g0012.1 protein AED:0.18 eAED:0.21 QI:213|1|0.9|1|0.77|0.8|10|0|749; (*SWP) sp|P46942|DB10_NICSY (e_value=0.0) ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT5G14610.2 (e_value=0.0) | Symbols: | DEAD box RNA helicase family protein | chr5:4711271-4714713 FORWARD LENGTH=645;; (*ITAG) Solyc02g086660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43884902-43894920 transcript_region:SL2.40ch02:43884902..43894920- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 *-** B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00015643g0011.1 protein AED:0.38 eAED:0.37 QI:90|0.7|0.54|0.90|0.8|0.81|11|749|245; (*SWP) sp|O04160|KSGT_BRANA (e_value=3e-71) Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2;; (*TAIR) AT2G30980.1 (e_value=2e-64) | Symbols: ASKdZeta, ATSK23, BIL1, ATSK2-2, SKdZeta | SHAGGY-related protein kinase dZeta | chr2:13182350-13185870 REVERSE LENGTH=412;; (*ITAG) Solyc02g086670.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:43898043-43905200 transcript_region:SL2.40ch02:43898043..43905200- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00015643g0009.1 protein AED:0.13 eAED:0.13 QI:137|0.8|1|1|0.4|0.66|6|281|343; (*SWP) sp|Q8H0T6|PPT2_ARATH (e_value=1e-43) Phosphoenolpyruvate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=PPT2 PE=2 SV=1;; (*TAIR) AT3G01550.1 (e_value=9e-45) | Symbols: ATPPT2, PPT2 | phosphoenolpyruvate (pep)/phosphate translocator 2 | chr3:216947-218856 REVERSE LENGTH=383;; (*ITAG) Solyc02g086650.2.1 (e_value=1e-80) genomic_reference:SL2.40ch02 gene_region:43880802-43884639 transcript_region:SL2.40ch02:43880802..43884639+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** B6TIJ4_MAIZE); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00015643g0010.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|1|1|3|439|344; (*SWP) sp|Q80XC2|TRM61_MOUSE (e_value=1e-71) tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1;; (*TAIR) AT5G14600.1 (e_value=7e-156) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:4707518-4709022 FORWARD LENGTH=318;; (*ITAG) Solyc02g086640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43875144-43877324 transcript_region:SL2.40ch02:43875144..43877324+ go_terms:GO:0005515 functional_description:"tRNA adenine-N1 methyltransferase catalytic subunit TRM61 (AHRD V1 ***- C1C0S4_9MAXI); contains Interpro domain(s) IPR014816 tRNA methyltransferase complex GCD14 subunit "; GO:0005515 NbS00013475g0015.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|55|145; (*ITAG) Solyc08g067650.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:53861969-53862439 transcript_region:SL2.40ch08:53861969..53862439- functional_description:"Unknown Protein (AHRD V1)"; NbS00013475g0016.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|1018; (*TAIR) AT4G24200.1 (e_value=3e-63) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr4:12556927-12559929 REVERSE LENGTH=1000;; (*ITAG) Solyc12g089320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62888275-62891286 transcript_region:SL2.40ch12:62888275..62891286- functional_description:"Bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *-*- Q6Z809_ORYSJ)"; NbS00013475g0017.1 protein AED:0.14 eAED:0.11 QI:0|0.78|0.70|1|0.56|0.70|24|0|1227; (*SWP) sp|Q9NQT8|KI13B_HUMAN (e_value=1e-19) Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1;; (*TAIR) AT1G20060.1 (e_value=2e-111) | Symbols: | ATP binding microtubule motor family protein | chr1:6950723-6956293 REVERSE LENGTH=970;; (*ITAG) Solyc08g042030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:28817061-28822907 transcript_region:SL2.40ch08:28817061..28822907+ go_terms:GO:0007018 functional_description:"Kinesin family protein (AHRD V1 *-*- C0NBI1_AJECG); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00013475g0014.1 protein AED:0.35 eAED:0.35 QI:234|1|1|1|1|1|5|351|121; (*SWP) sp|Q1RMP0|RPA12_BOVIN (e_value=5e-17) DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1 PE=2 SV=1;; (*TAIR) AT3G25940.1 (e_value=1e-36) | Symbols: | TFIIB zinc-binding protein | chr3:9495104-9495942 FORWARD LENGTH=119;; (*ITAG) Solyc04g054510.2.1 (e_value=4e-83) genomic_reference:SL2.40ch04 gene_region:51781312-51786992 transcript_region:SL2.40ch04:51781312..51786992- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase I subunit RPA12 (AHRD V1 **** B5X948_SALSA); contains Interpro domain(s) IPR001222 Zinc finger, TFIIS-type "; GO:0003899 NbS00027000g0005.1 protein AED:0.44 eAED:0.45 QI:0|0|0|1|1|1|2|0|126; (*SWP) sp|P48384|TRXM_PEA (e_value=4e-53) Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G15360.1 (e_value=4e-53) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc07g063190.2.1 (e_value=5e-63) genomic_reference:SL2.40ch07 gene_region:62954842-62957348 transcript_region:SL2.40ch07:62954842..62957348+ go_terms:GO:0004857,GO:0008047 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0004857,GO:0008047 NbS00017466g0002.1 protein AED:0.24 eAED:0.27 QI:0|1|0|1|1|1|2|0|501; (*SWP) sp|Q9LKR4|FRS10_ARATH (e_value=0.0) Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2;; (*TAIR) AT5G28530.1 (e_value=0.0) | Symbols: FRS10 | FAR1-related sequence 10 | chr5:10525078-10527300 REVERSE LENGTH=685;; (*ITAG) Solyc07g045520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55960774-55963655 transcript_region:SL2.40ch07:55960774..55963655+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00017466g0003.1 protein AED:0.40 eAED:0.67 QI:0|0.5|0|1|1|1|3|258|105; (*SWP) sp|Q9LKR4|FRS10_ARATH (e_value=2e-27) Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2;; (*TAIR) AT5G28530.1 (e_value=2e-28) | Symbols: FRS10 | FAR1-related sequence 10 | chr5:10525078-10527300 REVERSE LENGTH=685;; (*ITAG) Solyc07g045520.2.1 (e_value=6e-64) genomic_reference:SL2.40ch07 gene_region:55960774-55963655 transcript_region:SL2.40ch07:55960774..55963655+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00017466g0011.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|228; (*ITAG) Solyc07g045530.1.1 (e_value=1e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:55981088-55981717 transcript_region:SL2.40ch07:55981088..55981717- functional_description:"Unknown Protein (AHRD V1)"; NbS00050310g0006.1 protein AED:0.15 eAED:0.15 QI:192|1|1|1|1|1|2|272|237; (*ITAG) Solyc11g005420.1.1 (e_value=2e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:323491-326089 transcript_region:SL2.40ch11:323491..326089- functional_description:"Unknown Protein (AHRD V1)"; NbS00004708g0012.1 protein AED:0.00 eAED:0.00 QI:20|1|1|1|1|1|3|596|253; (*SWP) sp|Q8VY52|PPD2_ARATH (e_value=9e-77) PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1;; (*TAIR) AT2G28605.1 (e_value=7e-78) | Symbols: | Photosystem II reaction center PsbP family protein | chr2:12254911-12255689 FORWARD LENGTH=232;; (*ITAG) Solyc04g009420.2.1 (e_value=1e-126) genomic_reference:SL2.40ch04 gene_region:2840496-2842762 transcript_region:SL2.40ch04:2840496..2842762- go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 ***- Q11A16_TRIEI); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00004708g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|116; (*SWP) sp|P49690|RL23_ARATH (e_value=4e-72) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.1 (e_value=3e-73) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=4e-74) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00004708g0019.1 protein AED:0.10 eAED:0.12 QI:44|0.4|0.33|0.83|0.8|0.83|6|0|387; (*TAIR) AT1G43770.2 (e_value=4e-29) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:16548509-16550257 FORWARD LENGTH=431;; (*ITAG) Solyc04g009400.2.1 (e_value=1e-119) genomic_reference:SL2.40ch04 gene_region:2827528-2833846 transcript_region:SL2.40ch04:2827528..2833846+ functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q53MN0_ORYSJ)"; NbS00004708g0013.1 protein AED:0.23 eAED:0.23 QI:279|1|0.90|1|0.9|1|11|669|389; (*SWP) sp|Q94AQ6|SIR4_ARATH (e_value=7e-172) NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1;; (*TAIR) AT5G09230.5 (e_value=3e-173) | Symbols: SRT2 | sirtuin 2 | chr5:2871839-2873613 FORWARD LENGTH=354;; (*ITAG) Solyc04g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2843670-2851326 transcript_region:SL2.40ch04:2843670..2851326+ go_terms:GO:0003700 functional_description:"NAD-dependent deacetylase (AHRD V1 ***- D4SZS6_9XANT); contains Interpro domain(s) IPR003000 NAD-dependent histone deacetylase, silent information regulator Sir2 "; GO:0003700 NbS00004708g0014.1 protein AED:0.32 eAED:0.32 QI:128|1|0.85|1|0.83|0.85|7|225|204; (*SWP) sp|Q9XI05|PSB3A_ARATH (e_value=1e-141) Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2;; (*TAIR) AT1G21720.1 (e_value=1e-142) | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626394-7628070 FORWARD LENGTH=204;; (*ITAG) Solyc04g009410.2.1 (e_value=2e-144) genomic_reference:SL2.40ch04 gene_region:2835286-2840148 transcript_region:SL2.40ch04:2835286..2840148+ go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SXW4_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00052272g0008.1 protein AED:0.01 eAED:0.01 QI:209|1|1|1|1|1|10|395|1195; (*SWP) sp|Q96JX3|SRAC1_HUMAN (e_value=6e-50) Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=2 SV=1;; (*TAIR) AT4G34310.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:16414113-16419542 FORWARD LENGTH=1228;; (*ITAG) Solyc04g079280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61384114-61390904 transcript_region:SL2.40ch04:61384114..61390904+ go_terms:GO:0005488 functional_description:"LipA and NB-ARC domain protein (AHRD V1 *--- B8NDK8_ASPFN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00052272g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0.33|1|0|0.33|3|0|296; (*SWP) sp|O48722|HMOX2_ARATH (e_value=5e-55) Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=HO2 PE=1 SV=2;; (*TAIR) AT2G26550.2 (e_value=4e-56) | Symbols: HO2 | heme oxygenase 2 | chr2:11291584-11293426 REVERSE LENGTH=299;; (*ITAG) Solyc04g079290.2.1 (e_value=7e-78) genomic_reference:SL2.40ch04 gene_region:61391519-61394711 transcript_region:SL2.40ch04:61391519..61394711+ go_terms:GO:0020037 functional_description:"Heme oxygenase 2 (AHRD V1 **** Q94FW6_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant "; GO:0020037 NbS00011637g0008.1 protein AED:0.37 eAED:0.37 QI:0|1|0.5|1|1|1|2|0|217; (*SWP) sp|Q9FK68|RAA1C_ARATH (e_value=2e-138) Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1;; (*TAIR) AT5G45750.1 (e_value=2e-139) | Symbols: AtRABA1c, RABA1c | RAB GTPase homolog A1C | chr5:18559318-18560639 FORWARD LENGTH=216;; (*ITAG) Solyc02g072180.2.1 (e_value=9e-156) genomic_reference:SL2.40ch02 gene_region:36074672-36080983 transcript_region:SL2.40ch02:36074672..36080983+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00011637g0009.1 protein AED:0.23 eAED:0.24 QI:61|1|0.5|1|0|0|2|0|113; (*ITAG) Solyc02g072170.2.1 (e_value=2e-52) genomic_reference:SL2.40ch02 gene_region:36069129-36069636 transcript_region:SL2.40ch02:36069129..36069636- functional_description:"Unknown Protein (AHRD V1)"; NbS00041212g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|81; (*ITAG) Solyc10g084070.1.1 (e_value=3e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00060005g0001.1 protein AED:0.28 eAED:0.28 QI:209|0.87|0.77|1|0.87|0.77|9|0|366; (*SWP) sp|Q3E875|RGAP1_ARATH (e_value=1e-159) Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2;; (*TAIR) AT5G61530.1 (e_value=1e-160) | Symbols: | small G protein family protein / RhoGAP family protein | chr5:24742630-24744586 FORWARD LENGTH=376;; (*ITAG) Solyc03g093430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48160685-48165589 transcript_region:SL2.40ch03:48160685..48165589+ go_terms:GO:0005100 functional_description:"Rho GTPase activating protein 1 (AHRD V1 *-** Q568D8_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005100 NbS00015210g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|452; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=5e-80) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G42830.1 (e_value=2e-178) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:17176384-17177906 FORWARD LENGTH=450;; (*ITAG) Solyc04g078660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60952860-60954206 transcript_region:SL2.40ch04:60952860..60954206+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00008873g0005.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|60; (*TAIR) AT2G19270.1 (e_value=8e-19) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). | chr2:8360349-8361907 REVERSE LENGTH=359;; (*ITAG) Solyc09g055850.2.1 (e_value=8e-31) genomic_reference:SL2.40ch09 gene_region:41500331-41500987 transcript_region:SL2.40ch09:41500331..41500987- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018800 Mitotic checkpoint protein PRCC, C-terminal "; NbS00008873g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|0.5|1|1|2|659|197; (*TAIR) AT3G07510.2 (e_value=2e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2393895-2394464 REVERSE LENGTH=189;; (*ITAG) Solyc09g047930.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:30609081-30609602 transcript_region:SL2.40ch09:30609081..30609602+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008873g0015.1 protein AED:0.21 eAED:0.23 QI:60|0.5|0.33|1|0.5|0.33|3|57|205; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=2e-19) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT2G43280.1 (e_value=1e-43) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr2:17989739-17990861 FORWARD LENGTH=206;; (*ITAG) Solyc09g057880.2.1 (e_value=4e-89) genomic_reference:SL2.40ch09 gene_region:47291339-47302811 transcript_region:SL2.40ch09:47291339..47302811+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 *--- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00008873g0008.1 protein AED:0.12 eAED:0.26 QI:0|0|0|1|1|1|2|0|400; (*TAIR) AT2G19270.1 (e_value=8e-11) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). | chr2:8360349-8361907 REVERSE LENGTH=359;; (*ITAG) Solyc09g055870.2.1 (e_value=7e-73) genomic_reference:SL2.40ch09 gene_region:41509781-41511476 transcript_region:SL2.40ch09:41509781..41511476- functional_description:"Unknown Protein (AHRD V1)"; NbS00008873g0018.1 protein AED:0.20 eAED:0.20 QI:64|1|1|1|0.33|0.5|4|521|262; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=4e-22) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT3G07500.1 (e_value=4e-80) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr3:2392387-2393709 FORWARD LENGTH=217;; (*ITAG) Solyc09g057870.2.1 (e_value=2e-92) genomic_reference:SL2.40ch09 gene_region:47160646-47162750 transcript_region:SL2.40ch09:47160646..47162750- functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00026094g0019.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|0.66|0.5|4|0|372; (*TAIR) AT5G44010.1 (e_value=1e-22) | Symbols: | unknown protein; Has 28 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:17707224-17709199 REVERSE LENGTH=357;; (*ITAG) Solyc09g072860.1.1 (e_value=2e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61040328-61047123 transcript_region:SL2.40ch09:61040328..61047123- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 ***- Q9FNC5_ARATH)"; NbS00026094g0006.1 protein AED:0.12 eAED:0.12 QI:38|0.66|0.5|1|1|1|10|0|968; (*SWP) sp|Q84JA6|CESA4_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1;; (*TAIR) AT5G44030.1 (e_value=0.0) | Symbols: CESA4, IRX5, NWS2 | cellulose synthase A4 | chr5:17714713-17719564 FORWARD LENGTH=1049;; (*ITAG) Solyc09g072820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61011531-61017918 transcript_region:SL2.40ch09:61011531..61017918- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B8XPP6_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00026094g0027.1 protein AED:0.26 eAED:0.27 QI:0|0.71|0.75|1|0.85|0.75|8|463|487; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-33) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=2e-78) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc09g072830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61018842-61025055 transcript_region:SL2.40ch09:61018842..61025055- go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00026094g0002.1 protein AED:0.38 eAED:0.46 QI:0|0.5|0.42|0.85|0.83|0.71|7|440|363; (*TAIR) AT5G48050.1 (e_value=6e-25) | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19472661-19473770 REVERSE LENGTH=369;; (*ITAG) Solyc09g072860.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61040328-61047123 transcript_region:SL2.40ch09:61040328..61047123- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 ***- Q9FNC5_ARATH)"; NbS00026094g0030.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0|1|0.33|0.25|4|0|1238; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=0.0) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc09g072810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61007613-61011641 transcript_region:SL2.40ch09:61007613..61011641+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00026094g0023.1 protein AED:0.41 eAED:0.74 QI:15|0|0.5|1|1|0.5|2|0|87 NbS00018650g0013.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|323; (*TAIR) AT1G20990.1 (e_value=3e-70) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr1:7330524-7331946 REVERSE LENGTH=319;; (*ITAG) Solyc04g082940.2.1 (e_value=2e-169) genomic_reference:SL2.40ch04 gene_region:64004833-64006103 transcript_region:SL2.40ch04:64004833..64006103- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *-*- Q9LRV1_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00018650g0008.1 protein AED:0.02 eAED:0.03 QI:0|1|0.5|1|1|1|2|467|529; (*TAIR) AT2G33570.1 (e_value=5e-171) | Symbols: | Domain of unknown function (DUF23) | chr2:14217361-14219043 FORWARD LENGTH=496;; (*ITAG) Solyc04g082950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:64007739-64009855 transcript_region:SL2.40ch04:64007739..64009855+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbS00018650g0002.1 protein AED:0.12 eAED:0.12 QI:217|0.75|0.6|1|0.75|0.6|5|0|238; (*TAIR) AT1G21000.2 (e_value=2e-104) | Symbols: | PLATZ transcription factor family protein | chr1:7338013-7339088 FORWARD LENGTH=243;; (*ITAG) Solyc08g076860.2.1 (e_value=2e-78) genomic_reference:SL2.40ch08 gene_region:57934691-57936808 transcript_region:SL2.40ch08:57934691..57936808- go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **** D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00016179g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|513; (*SWP) sp|Q9LZ19|PP364_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2;; (*TAIR) AT5G04780.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:1384540-1386447 FORWARD LENGTH=635;; (*ITAG) Solyc11g006700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1299179-1301047 transcript_region:SL2.40ch11:1299179..1301047- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016179g0003.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|145; (*SWP) sp|P49215|RS17_SOLLC (e_value=1e-92) 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3;; (*TAIR) AT5G04800.4 (e_value=1e-78) | Symbols: | Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141;; (*ITAG) Solyc11g006690.1.1 (e_value=6e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1295503-1295937 transcript_region:SL2.40ch11:1295503..1295937- go_terms:GO:0005840 functional_description:"40S ribosomal protein S17-like protein (AHRD V1 ***- Q3HRX4_SOLTU); contains Interpro domain(s) IPR001210 Ribosomal protein S17e "; GO:0005840 NbS00011047g0010.1 protein AED:0.05 eAED:0.05 QI:174|1|1|1|0.5|0.6|5|600|123; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=2e-63) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.1 (e_value=1e-64) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=118;; (*ITAG) Solyc12g009120.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00011047g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.66|1|1|3|0|842; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT3G14067.1 (e_value=0.0) | Symbols: | Subtilase family protein | chr3:4658421-4660754 REVERSE LENGTH=777;; (*ITAG) Solyc06g062950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00020292g0003.1 protein AED:0.08 eAED:0.08 QI:82|0.8|0.83|1|0.6|0.83|6|288|255; (*TAIR) AT1G08220.1 (e_value=2e-76) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 168 Blast hits to 168 proteins in 86 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 107; Plants - 30; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | chr1:2581574-2583288 REVERSE LENGTH=274;; (*ITAG) Solyc11g066610.1.1 (e_value=1e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49460540-49465155 transcript_region:SL2.40ch11:49460540..49465155+ go_terms:GO:0005743 functional_description:"ATP synthase assembly protein Atp10 (Fragment) (AHRD V1 **-- D2W351_NAEGR); contains Interpro domain(s) IPR007849 ATPase assembly factor ATP10, mitochondria "; GO:0005743 NbS00020129g0004.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|270; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=7e-121) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G48280.1 (e_value=7e-39) | Symbols: CYP71A25 | cytochrome P450, family 71, subfamily A, polypeptide 25 | chr3:17879594-17881164 FORWARD LENGTH=490;; (*ITAG) Solyc01g008640.2.1 (e_value=2e-130) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032366g0011.1 protein AED:0.20 eAED:0.20 QI:55|1|1|1|0.66|0.6|10|464|326; (*SWP) sp|Q38884|EIF3I_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2;; (*TAIR) AT2G46290.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:19005910-19007797 REVERSE LENGTH=355;; (*ITAG) Solyc11g017070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7857531-7863332 transcript_region:SL2.40ch11:7857531..7863332- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 ***- B6SSB6_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00032366g0010.1 protein AED:0.24 eAED:0.25 QI:0|0.83|0.57|1|0.5|0.71|7|0|492; (*SWP) sp|Q8L7S0|ULP2B_ARATH (e_value=6e-77) Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3;; (*TAIR) AT1G09730.2 (e_value=5e-78) | Symbols: | Cysteine proteinases superfamily protein | chr1:3148017-3154236 REVERSE LENGTH=931;; (*ITAG) Solyc11g017040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7820295-7844282 transcript_region:SL2.40ch11:7820295..7844282+ go_terms:GO:0006508 functional_description:"Sentrin specific protease 1b (AHRD V1 *-*- D0G0B1_XENLA); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00017334g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|325; (*SWP) sp|Q00451|PRF1_SOLLC (e_value=5e-40) 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1;; (*TAIR) AT3G22120.1 (e_value=4e-26) | Symbols: CWLP | cell wall-plasma membrane linker protein | chr3:7795283-7796287 REVERSE LENGTH=334;; (*ITAG) Solyc08g078890.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59737899-59738777 transcript_region:SL2.40ch08:59737899..59738777+ go_terms:GO:0006869 functional_description:"At2g10940-like protein (Fragment) (AHRD V1 *-*- B3SKI0_ARAHA); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00017334g0010.1 protein AED:0.23 eAED:0.26 QI:63|1|0.5|1|1|1|2|255|360; (*SWP) sp|Q0WW40|FBK5_ARATH (e_value=5e-163) F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1;; (*TAIR) AT1G16250.1 (e_value=4e-164) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5557214-5558697 FORWARD LENGTH=383;; (*ITAG) Solyc07g042950.1.1 (e_value=6e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:53813491-53814027 transcript_region:SL2.40ch07:53813491..53814027- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDP2_ARALY)"; NbS00017334g0012.1 protein AED:0.19 eAED:0.19 QI:444|1|0.66|1|1|1|3|624|483; (*SWP) sp|Q1XDM0|ODPA_PORYE (e_value=1e-149) Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1;; (*TAIR) AT1G01090.1 (e_value=0.0) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00017334g0011.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|0.5|0.33|3|0|272; (*TAIR) AT5G60870.1 (e_value=4e-85) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:24485788-24487771 REVERSE LENGTH=445;; (*ITAG) Solyc07g042970.2.1 (e_value=5e-97) genomic_reference:SL2.40ch07 gene_region:53823782-53826357 transcript_region:SL2.40ch07:53823782..53826357+ go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 **-- B6KH87_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00002487g0002.1 protein AED:0.26 eAED:0.82 QI:0|0|0|1|1|1|3|0|231 NbS00002487g0004.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|0.5|0.33|3|0|1110; (*ITAG) Solyc12g098780.1.1 (e_value=1e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbC23416553g0001.1 protein AED:0.01 eAED:0.01 QI:9|1|0.5|1|0|0|2|0|45; (*TAIR) AT2G47980.1 (e_value=2e-14) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=1e-23) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00049765g0002.1 protein AED:0.00 eAED:0.00 QI:135|0|0.5|1|0|0.5|2|264|312; (*TAIR) AT2G03050.1 (e_value=2e-94) | Symbols: EMB93, SOLDAT10 | Mitochondrial transcription termination factor family protein | chr2:900094-900945 REVERSE LENGTH=283;; (*ITAG) Solyc05g007840.2.1 (e_value=3e-167) genomic_reference:SL2.40ch05 gene_region:2288417-2291474 transcript_region:SL2.40ch05:2288417..2291474+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB10_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00049765g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|112; (*SWP) sp|Q93Z27|CML45_ARATH (e_value=3e-25) Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1;; (*TAIR) AT5G39670.1 (e_value=2e-26) | Symbols: | Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204;; (*ITAG) Solyc02g088090.1.1 (e_value=3e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44857193-44857738 transcript_region:SL2.40ch02:44857193..44857738+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00029389g0013.1 protein AED:0.11 eAED:0.11 QI:1485|0.6|0.66|1|0.4|0.33|6|0|368; (*SWP) sp|Q8S0F0|FH1_ORYSJ (e_value=7e-146) Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1;; (*TAIR) AT3G25500.1 (e_value=1e-140) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc08g014430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4381550-4385666 transcript_region:SL2.40ch08:4381550..4385666+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00029389g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|333; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=6e-41) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=5e-81) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065660.1.1 (e_value=2e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00029389g0009.1 protein AED:0.24 eAED:0.24 QI:108|1|0.5|1|0.6|0.5|6|0|406; (*SWP) sp|Q9SYL0|BT3_ARATH (e_value=2e-134) BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana GN=BT3 PE=1 SV=2;; (*TAIR) AT1G05690.1 (e_value=2e-135) | Symbols: BT3 | BTB and TAZ domain protein 3 | chr1:1707809-1709132 FORWARD LENGTH=364;; (*ITAG) Solyc08g014440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4386003-4388880 transcript_region:SL2.40ch08:4386003..4388880- go_terms:GO:0030528,GO:0005515 functional_description:"CREB-binding protein (Fragment) (AHRD V1 *--* Q8QZV8_MOUSE); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00046182g0007.1 protein AED:0.01 eAED:0.01 QI:243|1|1|1|0.75|0.6|5|267|377; (*SWP) sp|O81221|ACT_GOSHI (e_value=0.0) Actin OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT5G59370.2 (e_value=0.0) | Symbols: ACT4 | actin 4 | chr5:23950109-23951586 FORWARD LENGTH=377;; (*ITAG) Solyc10g086460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64597752-64599548 transcript_region:SL2.40ch10:64597752..64599548+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q9SAR7_STRAF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbC25285878g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|109; (*SWP) sp|O49627|ISU1_ARATH (e_value=1e-55) Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1;; (*TAIR) AT4G22220.1 (e_value=8e-57) | Symbols: ISU1, ATISU1 | SufE/NifU family protein | chr4:11759444-11760881 REVERSE LENGTH=167;; (*ITAG) Solyc03g112900.2.1 (e_value=2e-73) genomic_reference:SL2.40ch03 gene_region:57238077-57241465 transcript_region:SL2.40ch03:57238077..57241465+ go_terms:GO:0008198 functional_description:"Iron-sulfur cluster assembly scaffold protein IscU (AHRD V1 **** D0I7Q6_VIBHO); contains Interpro domain(s) IPR002871 NIF system FeS cluster assembly, NifU, N-terminal "; GO:0008198 NbS00000159g0002.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|695; (*SWP) sp|O48809|LRX2_ARATH (e_value=2e-151) Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1;; (*TAIR) AT1G62440.1 (e_value=1e-151) | Symbols: LRX2 | leucine-rich repeat/extensin 2 | chr1:23111818-23115293 FORWARD LENGTH=826;; (*ITAG) Solyc11g005150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:138722-140581 transcript_region:SL2.40ch11:138722..140581+ go_terms:GO:0005515,GO:0009664 functional_description:"Leucine-rich repeat family protein (AHRD V1 *--- D7M406_ARALY); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0005515,GO:0009664 NbS00000159g0107.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|459 NbS00001351g0005.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0.33|3|0|281; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=6e-23) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G67080.1 (e_value=2e-52) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065660.1.1 (e_value=3e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00014100g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|2|0|223; (*SWP) sp|Q9LDE4|ERF83_ARATH (e_value=2e-15) Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1;; (*TAIR) AT3G20310.1 (e_value=2e-16) | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response factor 7 | chr3:7085957-7086691 REVERSE LENGTH=244;; (*ITAG) Solyc07g049490.1.1 (e_value=3e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:57088001-57088597 transcript_region:SL2.40ch07:57088001..57088597+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00014100g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|63 NbS00014100g0009.1 protein AED:0.43 eAED:0.43 QI:0|1|0.33|1|1|0.66|3|0|281; (*SWP) sp|Q9LIG6|NIFU4_ARATH (e_value=5e-122) NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1;; (*TAIR) AT3G20970.1 (e_value=4e-123) | Symbols: NFU4, ATNFU2 | NFU domain protein 4 | chr3:7348277-7350069 FORWARD LENGTH=283;; (*ITAG) Solyc11g007120.1.1 (e_value=4e-163) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1576541-1580907 transcript_region:SL2.40ch11:1576541..1580907+ go_terms:GO:0005515,GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_HAMD5); contains Interpro domain(s) IPR017065 HIRA-interacting protein 5 "; GO:0005515,GO:0005198 NbS00056749g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|1|1|3|0|96; (*ITAG) Solyc10g049500.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41522014-41524568 transcript_region:SL2.40ch10:41522014..41524568+ go_terms:GO:0030795,GO:0019010 functional_description:"S-adenosyl-L-methionine salicylic acid carboxyl methyltransferase (AHRD V1 **** Q9AVR1_STEFL); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0030795,GO:0019010 NbS00005414g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|335; (*SWP) sp|Q9LJI2|CCX3_ARATH (e_value=1e-82) Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1;; (*TAIR) AT3G14070.1 (e_value=9e-84) | Symbols: CAX9, CCX3, ATCCX3 | cation exchanger 9 | chr3:4661143-4663074 REVERSE LENGTH=643;; (*ITAG) Solyc07g042000.2.1 (e_value=8e-109) genomic_reference:SL2.40ch07 gene_region:52128503-52130786 transcript_region:SL2.40ch07:52128503..52130786- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00059098g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|118; (*SWP) sp|Q40592|RL10_TOBAC (e_value=3e-80) 60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=4e-65) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=2e-81) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00059098g0010.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.5|0.75|1|1|4|627|164; (*SWP) sp|Q40592|RL10_TOBAC (e_value=8e-80) 60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=1e-64) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=5e-81) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00015221g0005.1 protein AED:0.29 eAED:0.71 QI:0|0|0|0.66|1|1|3|0|120 NbS00001308g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|380; (*TAIR) AT3G09180.1 (e_value=1e-161) | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402;; (*ITAG) Solyc01g087230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73917170-73918585 transcript_region:SL2.40ch01:73917170..73918585+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001308g0002.1 protein AED:0.48 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|75; (*ITAG) Solyc01g087230.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:73917170-73918585 transcript_region:SL2.40ch01:73917170..73918585+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010317g0010.1 protein AED:0.26 eAED:0.31 QI:0|0.30|0.14|0.92|0.76|0.71|14|0|687; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=7e-27) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT1G58230.1 (e_value=2e-155) | Symbols: | binding | chr1:21566331-21578865 FORWARD LENGTH=2604;; (*ITAG) Solyc04g076500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58968717-58976940 transcript_region:SL2.40ch04:58968717..58976940+ functional_description:"BEACH domain-containing protein (AHRD V1 **-- D3BT75_POLPA); contains Interpro domain(s) IPR008985 Concanavalin A-like lectin/glucanase "; NbS00035543g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|162; (*TAIR) AT5G57685.1 (e_value=4e-24) | Symbols: ATGDU3, GDU3, LSB1 | glutamine dumper 3 | chr5:23366356-23366802 REVERSE LENGTH=148;; (*ITAG) Solyc12g096490.1.1 (e_value=6e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63727414-63727908 transcript_region:SL2.40ch12:63727414..63727908- functional_description:"GDU1 (AHRD V1 *-*- B6TY22_MAIZE)"; NbS00059687g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.5|1|0.8|1|6|0|307; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-45) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=2e-109) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g078270.1.1 (e_value=5e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59428108-59430225 transcript_region:SL2.40ch10:59428108..59430225- go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY45_9BRAS); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00017231g0010.1 protein AED:0.26 eAED:0.26 QI:51|1|0.83|1|0.4|0.66|6|471|326; (*SWP) sp|Q9LTT3|HMG10_ARATH (e_value=1e-98) High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1;; (*TAIR) AT3G13350.1 (e_value=9e-100) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr3:4335721-4337804 REVERSE LENGTH=319;; (*ITAG) Solyc12g016190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6311971-6326406 transcript_region:SL2.40ch12:6311971..6326406+ go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00002310g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|1|1|5|0|459; (*SWP) sp|A8DZE7|D42E1_DANRE (e_value=1e-90) Short-chain dehydrogenase/reductase family 42E member 1 OS=Danio rerio GN=sdr42e1 PE=2 SV=1;; (*TAIR) AT2G33630.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:14236951-14238734 REVERSE LENGTH=480;; (*ITAG) Solyc04g082750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63907580-63910780 transcript_region:SL2.40ch04:63907580..63910780+ go_terms:GO:0000252 functional_description:"3-beta hydroxysteroid dehydrogenase/isomerase family protein (AHRD V1 **** D7LGC3_ARALY); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0000252 NbS00023607g0022.1 protein AED:0.07 eAED:0.07 QI:0|0.87|0.77|1|0.75|0.77|9|39|815; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-86) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G19170.1 (e_value=0.0) | Symbols: SLP3 | subtilisin-like serine protease 3 | chr2:8314154-8317620 REVERSE LENGTH=815;; (*ITAG) Solyc08g077860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58944472-58948879 transcript_region:SL2.40ch08:58944472..58948879+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00023607g0020.1 protein AED:0.08 eAED:0.11 QI:164|0.66|0.68|0.88|0.58|0.68|25|0|1333; (*TAIR) AT4G17610.1 (e_value=0.0) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00023607g0026.1 protein AED:0.48 eAED:0.46 QI:0|1|0.2|1|1|1|5|0|238; (*SWP) sp|Q13395|TARB1_HUMAN (e_value=1e-45) Probable methyltransferase TARBP1 OS=Homo sapiens GN=TARBP1 PE=1 SV=1;; (*TAIR) AT4G17610.1 (e_value=4e-101) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=9e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00023607g0028.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|0.66|3|0|162; (*ITAG) Solyc08g077870.2.1 (e_value=8e-68) genomic_reference:SL2.40ch08 gene_region:58948955-58949961 transcript_region:SL2.40ch08:58948955..58949961- functional_description:"Unknown Protein (AHRD V1)"; NbS00023607g0024.1 protein AED:0.04 eAED:0.04 QI:34|1|1|1|0.5|1|3|528|266; (*TAIR) AT4G17600.1 (e_value=5e-90) | Symbols: LIL3:1 | Chlorophyll A-B binding family protein | chr4:9803759-9804714 FORWARD LENGTH=262;; (*ITAG) Solyc08g077880.2.1 (e_value=6e-156) genomic_reference:SL2.40ch08 gene_region:58954741-58956863 transcript_region:SL2.40ch08:58954741..58956863- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- B9N2V9_POPTR)"; NbS00003746g0008.1 protein AED:0.23 eAED:0.24 QI:19|0.81|0.76|1|0.81|0.94|17|689|636; (*SWP) sp|O22898|LACS1_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1;; (*TAIR) AT2G47240.2 (e_value=0.0) | Symbols: LACS1 | AMP-dependent synthetase and ligase family protein | chr2:19393835-19397616 FORWARD LENGTH=660;; (*ITAG) Solyc01g079240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70843643-70849117 transcript_region:SL2.40ch01:70843643..70849117+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase family protein (AHRD V1 **** D7LGL1_ARALY); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00003746g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.71|1|0.66|0.85|7|355|795; (*SWP) sp|O22899|DHX15_ARATH (e_value=0.0) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1;; (*TAIR) AT3G62310.1 (e_value=0.0) | Symbols: | RNA helicase family protein | chr3:23057516-23060561 REVERSE LENGTH=726;; (*ITAG) Solyc01g079250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70850920-70856753 transcript_region:SL2.40ch01:70850920..70856753- go_terms:GO:0004004 functional_description:"mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00004938g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|60 NbS00041674g0002.1 protein AED:0.23 eAED:0.22 QI:140|0|0.33|0.66|1|1|6|47|115; (*SWP) sp|P46279|RPB7_SOYBN (e_value=1e-15) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G59180.1 (e_value=2e-14) | Symbols: NRPB7 | DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176;; (*ITAG) Solyc06g005790.2.1 (e_value=3e-17) genomic_reference:SL2.40ch06 gene_region:819742-824084 transcript_region:SL2.40ch06:819742..824084- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003899 NbS00038544g0015.1 protein AED:0.29 eAED:0.29 QI:0|1|0.8|1|0.5|0.8|5|671|326; (*TAIR) AT4G27750.1 (e_value=4e-156) | Symbols: ISI1 | binding | chr4:13841708-13843501 FORWARD LENGTH=305;; (*ITAG) Solyc03g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46220340-46223630 transcript_region:SL2.40ch03:46220340..46223630+ go_terms:GO:0005488 functional_description:"Impaired sucrose induction 1-like protein (AHRD V1 ***- Q5TJC6_SOLTU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00038544g0014.1 protein AED:0.42 eAED:0.42 QI:82|1|1|1|1|1|2|181|105; (*SWP) sp|Q2V3E2|YIPL5_ARATH (e_value=4e-42) Protein yippee-like At4g27740 OS=Arabidopsis thaliana GN=At4g27740 PE=3 SV=1;; (*TAIR) AT4G27740.1 (e_value=3e-43) | Symbols: | Yippee family putative zinc-binding protein | chr4:13839148-13839616 FORWARD LENGTH=105;; (*ITAG) Solyc03g082720.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:46175262-46176248 transcript_region:SL2.40ch03:46175262..46176248+ go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00038544g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|4|0|236; (*SWP) sp|Q9SA80|WRK14_ARATH (e_value=9e-14) Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2;; (*TAIR) AT4G01250.1 (e_value=3e-16) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc03g082810.1.1 (e_value=2e-72) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:46218868-46219527 transcript_region:SL2.40ch03:46218868..46219527- go_terms:GO:0045449 functional_description:"Transcription factor WRKY 2 (AHRD V1 *-*- A9RFR5_PHYPA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00038544g0012.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.66|0.25|4|0|505; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=7e-98) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=5e-99) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g082830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46223670-46226040 transcript_region:SL2.40ch03:46223670..46226040- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00038544g0013.1 protein AED:0.45 eAED:0.55 QI:0|0|0|0.8|0|0|5|0|150; (*SWP) sp|Q9T096|YIPL6_ARATH (e_value=3e-44) Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2;; (*TAIR) AT4G27745.1 (e_value=3e-45) | Symbols: | Yippee family putative zinc-binding protein | chr4:13840530-13841279 FORWARD LENGTH=106;; (*ITAG) Solyc03g082740.2.1 (e_value=1e-53) genomic_reference:SL2.40ch03 gene_region:46180870-46182205 transcript_region:SL2.40ch03:46180870..46182205+ go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00030170g0013.1 protein AED:0.13 eAED:0.14 QI:0|1|0.87|1|0.71|0.87|8|0|492; (*SWP) sp|Q0WRX3|SCP40_ARATH (e_value=0.0) Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=0.0) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g087950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74556171-74558727 transcript_region:SL2.40ch01:74556171..74558727- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00030170g0014.1 protein AED:0.15 eAED:0.15 QI:74|1|1|1|0.7|0.54|11|387|391; (*SWP) sp|Q9SV01|FBW4_ARATH (e_value=4e-116) F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2;; (*TAIR) AT3G52030.2 (e_value=3e-125) | Symbols: | F-box family protein with WD40/YVTN repeat doamin | chr3:19301872-19304227 FORWARD LENGTH=433;; (*ITAG) Solyc01g087910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74533038-74542961 transcript_region:SL2.40ch01:74533038..74542961- functional_description:"F-box/WD-40 repeat-containing protein At3g52030 (AHRD V1 ***- FBW4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00030170g0012.1 protein AED:0.04 eAED:0.08 QI:56|0.5|0.2|1|0.25|0.2|5|0|589; (*SWP) sp|Q869R1|CTLHB_DICDI (e_value=1e-15) CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1;; (*TAIR) AT5G13760.1 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr5:4442102-4444565 FORWARD LENGTH=569;; (*ITAG) Solyc01g087890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74519205-74522762 transcript_region:SL2.40ch01:74519205..74522762+ functional_description:"Choline transporter-like protein 5-A (Fragment) (AHRD V1 *--- CTL5A_DANRE); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00024809g0002.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.5|0.66|0.75|4|0|186 NbS00058681g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|415; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=1e-51) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT5G55090.1 (e_value=2e-106) | Symbols: MAPKKK15 | mitogen-activated protein kinase kinase kinase 15 | chr5:22356852-22358198 REVERSE LENGTH=448;; (*ITAG) Solyc07g051930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57797942-57799054 transcript_region:SL2.40ch07:57797942..57799054+ go_terms:GO:0004691 functional_description:"Protein serine/threonine kinase (AHRD V1 **** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004691 NbS00028382g0004.1 protein AED:0.04 eAED:0.04 QI:107|0.5|0.6|1|0.25|0.6|5|1284|226; (*SWP) sp|Q33DL3|CFI_TOBAC (e_value=9e-129) Chalcone--flavonone isomerase OS=Nicotiana tabacum GN=CHI PE=2 SV=1;; (*TAIR) AT3G55120.1 (e_value=3e-68) | Symbols: TT5, A11, CFI | Chalcone-flavanone isomerase family protein | chr3:20430248-20431415 REVERSE LENGTH=246;; (*ITAG) Solyc05g010320.2.1 (e_value=2e-99) genomic_reference:SL2.40ch05 gene_region:4465276-4467913 transcript_region:SL2.40ch05:4465276..4467913+ go_terms:GO:0042398,GO:0009813 functional_description:"Chalcone--flavonone isomerase (AHRD V1 ***- D7LV11_ARALY); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398,GO:0009813 NbS00008947g0010.1 protein AED:0.06 eAED:0.06 QI:213|0.83|0.85|1|0.66|0.71|7|314|543; (*TAIR) AT4G02940.1 (e_value=5e-153) | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569;; (*ITAG) Solyc06g084380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45809712-45812769 transcript_region:SL2.40ch06:45809712..45812769+ go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 ***- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00008947g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|186; (*ITAG) Solyc06g084370.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:45798612-45799007 transcript_region:SL2.40ch06:45798612..45799007+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008947g0012.1 protein AED:0.34 eAED:0.33 QI:351|0.63|0.75|0.91|0.72|0.75|12|571|327; (*TAIR) AT1G63900.1 (e_value=1e-132) | Symbols: DAL1 | E3 Ubiquitin ligase family protein | chr1:23717056-23719086 FORWARD LENGTH=343;; (*ITAG) Solyc06g084360.2.1 (e_value=5e-167) genomic_reference:SL2.40ch06 gene_region:45789645-45797146 transcript_region:SL2.40ch06:45789645..45797146+ go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- B0XJ37_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008947g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.8|1|1|1|5|395|186; (*SWP) sp|P33490|ABP1_TOBAC (e_value=7e-117) Auxin-binding protein T85 OS=Nicotiana tabacum GN=T85 PE=3 SV=1;; (*TAIR) AT4G02980.1 (e_value=2e-90) | Symbols: ABP1, ABP | endoplasmic reticulum auxin binding protein 1 | chr4:1319902-1321449 REVERSE LENGTH=198;; (*ITAG) Solyc06g084390.2.1 (e_value=2e-114) genomic_reference:SL2.40ch06 gene_region:45813049-45815938 transcript_region:SL2.40ch06:45813049..45815938- go_terms:GO:0005515 functional_description:"ER auxin binding protein 1 (AHRD V1 **** Q9ZRX6_SOLLC); contains Interpro domain(s) IPR000886 Endoplasmic reticulum, targeting sequence "; GO:0005515 NbS00029880g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|3|0|328; (*SWP) sp|O49545|BAME1_ARATH (e_value=2e-23) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G56370.1 (e_value=7e-28) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc11g069960.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51643713-51646669 transcript_region:SL2.40ch11:51643713..51646669- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00033805g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|169; (*ITAG) Solyc07g052460.2.1 (e_value=8e-39) genomic_reference:SL2.40ch07 gene_region:58273857-58275345 transcript_region:SL2.40ch07:58273857..58275345+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 ***- Q9LSZ3_ARATH)"; NbS00037067g0006.1 protein AED:0.10 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|0|175; (*TAIR) AT5G20110.1 (e_value=8e-23) | Symbols: | Dynein light chain type 1 family protein | chr5:6791542-6793253 REVERSE LENGTH=209;; (*ITAG) Solyc12g006630.1.1 (e_value=7e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1101151-1105133 transcript_region:SL2.40ch12:1101151..1105133- go_terms:GO:0005875 functional_description:"Dynein light chain 1 cytoplasmic (AHRD V1 *-*- Q7RN10_PLAYO); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0005875 NbS00037067g0003.1 protein AED:0.14 eAED:0.14 QI:89|1|1|1|1|0.5|2|0|97; (*TAIR) AT1G80160.2 (e_value=3e-42) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151280-30151930 FORWARD LENGTH=141;; (*ITAG) Solyc12g006640.1.1 (e_value=2e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1110621-1111983 transcript_region:SL2.40ch12:1110621..1111983- go_terms:GO:0004462 functional_description:"Lactoylglutathione lyase (AHRD V1 **-* B4UW95_ARAHY); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00037067g0001.1 protein AED:0.27 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|131; (*TAIR) AT5G20100.1 (e_value=7e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6790153-6790494 FORWARD LENGTH=113; NbS00025085g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|83; (*SWP) sp|O80492|P2C05_ARATH (e_value=1e-22) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=1e-23) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=8e-37) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00015030g0013.1 protein AED:0.13 eAED:0.13 QI:258|0.8|0.72|1|0.5|0.45|11|475|750; (*TAIR) AT1G70950.1 (e_value=5e-29) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr1:26752779-26755242 FORWARD LENGTH=478;; (*ITAG) Solyc05g008090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2513534-2518326 transcript_region:SL2.40ch05:2513534..2518326+ functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00015030g0002.1 protein AED:0.19 eAED:0.19 QI:297|1|1|1|0.75|0.6|5|441|190; (*SWP) sp|Q4R7Y5|DNJB6_MACFA (e_value=1e-18) DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1;; (*TAIR) AT1G71000.1 (e_value=2e-46) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr1:26769336-26770111 REVERSE LENGTH=165;; (*ITAG) Solyc05g008120.2.1 (e_value=8e-92) genomic_reference:SL2.40ch05 gene_region:2532093-2533714 transcript_region:SL2.40ch05:2532093..2533714- go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6U761_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00015030g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|142; (*ITAG) Solyc05g008110.2.1 (e_value=3e-12) genomic_reference:SL2.40ch05 gene_region:2528469-2529335 transcript_region:SL2.40ch05:2528469..2529335- functional_description:"Unknown Protein (AHRD V1)"; NbS00015030g0005.1 protein AED:0.53 eAED:0.58 QI:0|0|0|0.2|1|1|5|0|270 NbS00023196g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0|1|1|0|2|0|124; (*SWP) sp|Q9ZRT5|GSTT1_ARATH (e_value=8e-54) Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1;; (*TAIR) AT5G41210.1 (e_value=6e-55) | Symbols: ATGSTT1, GST10, GSTT1 | glutathione S-transferase THETA 1 | chr5:16492550-16493884 REVERSE LENGTH=245;; (*ITAG) Solyc12g056250.1.1 (e_value=5e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47565850-47567987 transcript_region:SL2.40ch12:47565850..47567987- functional_description:"Glutathione S-transferase (AHRD V1 ***- Q9M558_EUPES); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbC26169099g0006.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0.5|0.33|3|0|344; (*SWP) sp|O24146|4CL2_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=1e-164) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc06g068650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38947648-38951634 transcript_region:SL2.40ch06:38947648..38951634- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00012619g0005.1 protein AED:0.25 eAED:0.25 QI:151|1|1|1|0.57|0.5|8|490|233; (*SWP) sp|Q9SCP9|VP371_ARATH (e_value=6e-73) Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1;; (*TAIR) AT3G53120.1 (e_value=5e-74) | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r)) protein | chr3:19690729-19692490 REVERSE LENGTH=217;; (*ITAG) Solyc10g083780.1.1 (e_value=4e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62858795-62864011 transcript_region:SL2.40ch10:62858795..62864011+ functional_description:"Vacuolar protein-sorting-associated protein 37 homolog 1 (AHRD V1 **-- VP371_ARATH); contains Interpro domain(s) IPR009851 Modifier of rudimentary, Modr "; NbS00012619g0006.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0.33|3|0|257; (*SWP) sp|Q6TBX7|LUT1_ARATH (e_value=9e-76) Carotene epsilon-monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=CYP97C1 PE=1 SV=1;; (*TAIR) AT3G53130.1 (e_value=7e-77) | Symbols: LUT1, CYP97C1 | Cytochrome P450 superfamily protein | chr3:19692812-19695278 FORWARD LENGTH=539;; (*ITAG) Solyc10g083790.1.1 (e_value=7e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62864898-62869438 transcript_region:SL2.40ch10:62864898..62869438+ go_terms:GO:0009055 functional_description:"Cytochrome P450"; GO:0009055 NbS00022226g0010.1 protein AED:0.42 eAED:0.42 QI:0|0.25|0|0.8|0.5|0.4|5|0|2179; (*TAIR) AT2G22560.1 (e_value=3e-112) | Symbols: | Kinase interacting (KIP1-like) family protein | chr2:9585892-9588838 FORWARD LENGTH=947;; (*ITAG) Solyc04g076350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58854609-58860564 transcript_region:SL2.40ch04:58854609..58860564+ functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00022226g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|1|1|1|4|0|335; (*TAIR) AT1G09710.1 (e_value=3e-19) | Symbols: | Homeodomain-like superfamily protein | chr1:3141119-3144232 FORWARD LENGTH=610;; (*ITAG) Solyc04g076360.2.1 (e_value=7e-114) genomic_reference:SL2.40ch04 gene_region:58861097-58866845 transcript_region:SL2.40ch04:58861097..58866845- go_terms:GO:0003677,GO:0045449 functional_description:"Telomeric repeat-binding factor 1 (AHRD V1 *-*- TERF1_HUMAN); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00007447g0013.1 protein AED:0.23 eAED:0.34 QI:9|0.22|0|0.9|0.44|0.3|10|0|607; (*SWP) sp|Q42699|METE_CATRO (e_value=2e-176) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=3e-174) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00007447g0014.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.25|1|0.87|8|0|239; (*SWP) sp|Q42699|METE_CATRO (e_value=7e-77) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT3G03780.3 (e_value=2e-73) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00007447g0003.1 protein AED:0.14 eAED:0.14 QI:59|0|0.5|1|0|0.5|2|0|465; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-116) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-116) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00049780g0002.1 protein AED:0.73 eAED:0.92 QI:0|0|0|0.5|1|1|4|0|78; (*ITAG) Solyc08g062770.2.1 (e_value=2e-18) genomic_reference:SL2.40ch08 gene_region:49090923-49107311 transcript_region:SL2.40ch08:49090923..49107311+ functional_description:"Methyltransferase-like protein 6 (AHRD V1 *-*- B5X6R8_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; NbS00059355g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|405; (*ITAG) Solyc02g091090.2.1 (e_value=2e-99) genomic_reference:SL2.40ch02 gene_region:47076668-47079219 transcript_region:SL2.40ch02:47076668..47079219- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 *-*- D7KCN6_ARALY); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0016020 NbS00046569g0004.1 protein AED:0.78 eAED:0.89 QI:0|0|0|0.4|1|1|5|0|117; (*SWP) sp|Q8RXY0|Y3333_ARATH (e_value=9e-35) Probable inactive protein kinase At3g63330 OS=Arabidopsis thaliana GN=At3g63330 PE=2 SV=1;; (*TAIR) AT3G63340.1 (e_value=5e-35) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc09g065650.2.1 (e_value=5e-53) genomic_reference:SL2.40ch09 gene_region:59424149-59448182 transcript_region:SL2.40ch09:59424149..59448182- go_terms:GO:0006468,GO:0003824 functional_description:"Protein phosphatase 1L-like protein (AHRD V1 *--- D0NIG5_PHYIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0006468,GO:0003824 NbS00006203g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.33|1|1|1|6|0|368; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=1e-25) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT3G55740.1 (e_value=0.0) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20695786-20698157 FORWARD LENGTH=439;; (*ITAG) Solyc05g052830.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62143139-62149192 transcript_region:SL2.40ch05:62143139..62149192- go_terms:GO:0015193 functional_description:"Proline transporter 2 (AHRD V1 **** Q9XE49_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00006203g0008.1 protein AED:0.15 eAED:0.25 QI:0|0.5|0.4|1|0.25|0.4|5|0|277; (*TAIR) AT3G55740.2 (e_value=4e-104) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20696573-20698157 FORWARD LENGTH=383;; (*ITAG) Solyc05g052830.2.1 (e_value=2e-111) genomic_reference:SL2.40ch05 gene_region:62143139-62149192 transcript_region:SL2.40ch05:62143139..62149192- go_terms:GO:0015193 functional_description:"Proline transporter 2 (AHRD V1 **** Q9XE49_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00024701g0001.1 protein AED:0.17 eAED:0.17 QI:101|0.76|0.78|1|0.92|0.85|14|484|691; (*SWP) sp|Q9T074|PCKA_ARATH (e_value=0.0) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1;; (*TAIR) AT4G37870.1 (e_value=0.0) | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671;; (*ITAG) Solyc04g076880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising "; GO:0004612,GO:0042802 NbS00024701g0012.1 protein AED:0.26 eAED:0.35 QI:0|0|0.33|1|0.5|0.33|3|0|174; (*SWP) sp|Q9SXC8|UFC1_ARATH (e_value=2e-101) Ubiquitin-fold modifier-conjugating enzyme 1 OS=Arabidopsis thaliana GN=At1g27530 PE=2 SV=1;; (*TAIR) AT1G27530.1 (e_value=2e-102) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr1:9562761-9563887 REVERSE LENGTH=174;; (*ITAG) Solyc04g076890.2.1 (e_value=2e-107) genomic_reference:SL2.40ch04 gene_region:59417369-59419011 transcript_region:SL2.40ch04:59417369..59419011- go_terms:GO:0005515 functional_description:"Ubiquitin-fold modifier-conjugating enzyme 1 (AHRD V1 ***- UFC1_ARATH); contains Interpro domain(s) IPR014806 Ubiquitin-fold modifier-conjugating enzyme 1 "; GO:0005515 NbS00001711g0012.1 protein AED:0.02 eAED:0.02 QI:269|1|1|1|1|1|4|228|278; (*SWP) sp|Q05466|HAT4_ARATH (e_value=8e-93) Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1;; (*TAIR) AT4G16780.1 (e_value=6e-94) | Symbols: ATHB-2, HAT4, ATHB2, HB-2 | homeobox protein 2 | chr4:9449291-9450604 FORWARD LENGTH=284;; (*ITAG) Solyc06g060830.2.1 (e_value=7e-135) genomic_reference:SL2.40ch06 gene_region:35241162-35243058 transcript_region:SL2.40ch06:35241162..35243058- go_terms:GO:0043565,GO:0042803 functional_description:"Homeobox-leucine zipper protein (AHRD V1 ***- Q40781_PIMBR); contains Interpro domain(s) IPR006712 HD-ZIP protein, N-terminal "; GO:0043565,GO:0042803 NbS00001711g0013.1 protein AED:0.26 eAED:0.26 QI:422|0.85|0.87|1|0.85|0.75|8|401|334; (*TAIR) AT4G17520.1 (e_value=2e-31) | Symbols: | Hyaluronan / mRNA binding family | chr4:9771496-9773313 FORWARD LENGTH=360;; (*ITAG) Solyc08g007220.2.1 (e_value=1e-39) genomic_reference:SL2.40ch08 gene_region:1786907-1790103 transcript_region:SL2.40ch08:1786907..1790103- go_terms:GO:0003723 functional_description:"Nuclear RNA binding protein (Fragment) (AHRD V1 **** Q9SQ56_TOBAC); contains Interpro domain(s) IPR006861 Hyaluronan/mRNA binding protein "; GO:0003723 NbS00001711g0014.1 protein AED:0.24 eAED:0.24 QI:230|0.66|0.85|1|0.5|0.71|7|622|133; (*SWP) sp|Q05737|YPTM2_MAIZE (e_value=7e-52) GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1;; (*TAIR) AT4G17530.1 (e_value=4e-52) | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase homolog 1C | chr4:9773721-9775424 REVERSE LENGTH=202;; (*ITAG) Solyc08g078070.2.1 (e_value=6e-57) genomic_reference:SL2.40ch08 gene_region:59084544-59087746 transcript_region:SL2.40ch08:59084544..59087746+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00001711g0019.1 protein AED:0.25 eAED:0.27 QI:0|0.8|0.66|1|0.8|0.83|6|205|426; (*SWP) sp|Q40412|ABA2_NICPL (e_value=1e-23) Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1;; (*TAIR) AT2G35660.1 (e_value=0.0) | Symbols: CTF2A | FAD/NAD(P)-binding oxidoreductase family protein | chr2:14988499-14990320 FORWARD LENGTH=439;; (*ITAG) Solyc06g060880.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35282556-35285882 transcript_region:SL2.40ch06:35282556..35285882- go_terms:GO:0008152,GO:0016491 functional_description:"Monooxygenase FAD-binding protein (AHRD V1 **-- Q1B616_MYCSS); contains Interpro domain(s) IPR003042 Aromatic-ring hydroxylase-like "; GO:0008152,GO:0016491 NbS00016372g0007.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|367; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=3e-106) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=4e-47) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc11g066640.1.1 (e_value=2e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49494782-49496101 transcript_region:SL2.40ch11:49494782..49496101+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00016372g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.33|1|1|3|0|210; (*ITAG) Solyc08g044370.1.1 (e_value=3e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00016372g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|178 NbS00016372g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|129; (*TAIR) AT1G01090.1 (e_value=3e-18) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=4e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00016372g0003.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|103 NbS00016372g0008.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|73 NbS00016372g0004.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|66 NbS00016372g0015.1 protein AED:0.97 eAED:0.97 QI:0|0|0|0.25|1|1|4|0|209 NbS00016372g0016.1 protein AED:0.56 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|60 NbS00016372g0022.1 protein AED:0.23 eAED:0.23 QI:115|0.71|0.87|1|0.85|0.75|8|548|151; (*SWP) sp|Q6GL69|MK67I_XENTR (e_value=5e-25) MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1;; (*TAIR) AT5G04600.1 (e_value=1e-48) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222;; (*ITAG) Solyc11g066630.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49482826-49486050 transcript_region:SL2.40ch11:49482826..49486050- go_terms:GO:0005515,GO:0003723 functional_description:"MKI67 FHA domain-interacting nucleolar phosphoprotein-like (AHRD V1 **-- B4FL92_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00042303g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.62|1|0.71|0.75|8|0|433; (*TAIR) AT3G57200.1 (e_value=1e-170) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21169413-21172103 FORWARD LENGTH=514;; (*ITAG) Solyc10g079210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60119732-60124652 transcript_region:SL2.40ch10:60119732..60124652+ functional_description:"Abscisic acid insensitive 8 homologue (AHRD V1 **-- A5A6Q2_WHEAT)"; NbS00017380g0002.1 protein AED:0.08 eAED:0.19 QI:0|1|0.5|1|0|0.5|2|0|519; (*SWP) sp|Q76NT0|MRM1_DICDI (e_value=5e-34) Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum GN=mrm1 PE=3 SV=1;; (*TAIR) AT2G19870.1 (e_value=4e-165) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr2:8576034-8577803 FORWARD LENGTH=589;; (*ITAG) Solyc05g017990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:19345633-19347637 transcript_region:SL2.40ch05:19345633..19347637+ go_terms:GO:0008989 functional_description:"tRNA/rRNA methyltransferase (AHRD V1 *-** D9V4V2_9ACTO); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0008989 NbS00027675g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|648; (*SWP) sp|Q9SUQ3|Y4374_ARATH (e_value=0.0) Probable inactive receptor kinase At4g23740 OS=Arabidopsis thaliana GN=At4g23740 PE=1 SV=1;; (*TAIR) AT4G23740.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:12367063-12369159 FORWARD LENGTH=638;; (*ITAG) Solyc08g081940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62017281-62021205 transcript_region:SL2.40ch08:62017281..62021205+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00036582g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|506; (*SWP) sp|Q9M6E8|NCED1_PHAVU (e_value=0.0) 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1;; (*TAIR) AT3G14440.1 (e_value=0.0) | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epoxycarotenoid dioxygenase 3 | chr3:4831678-4833477 REVERSE LENGTH=599;; (*ITAG) Solyc07g056570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:61684846-61686663 transcript_region:SL2.40ch07:61684846..61686663- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase"; GO:0045549 NbS00027381g0001.1 protein AED:0.38 eAED:0.42 QI:0|0.28|0|0.87|1|1|8|0|225 NbS00040068g0007.1 protein AED:0.14 eAED:0.14 QI:172|0.75|0.8|1|1|1|5|284|468; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=4e-35) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT1G72480.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr1:27286304-27288339 REVERSE LENGTH=509;; (*ITAG) Solyc03g122250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64185690-64190037 transcript_region:SL2.40ch03:64185690..64190037- go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00040068g0006.1 protein AED:0.33 eAED:0.33 QI:365|1|0.8|1|0.75|0.8|5|0|128; (*SWP) sp|Q5E9Z8|LSM1_BOVIN (e_value=1e-16) U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1;; (*TAIR) AT3G14080.2 (e_value=1e-65) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128;; (*ITAG) Solyc06g062980.2.1 (e_value=5e-72) genomic_reference:SL2.40ch06 gene_region:36140594-36143279 transcript_region:SL2.40ch06:36140594..36143279+ go_terms:GO:0005515,GO:0000339 functional_description:"U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0000339 NbS00020555g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|190; (*SWP) sp|P06405|PSAA_TOBAC (e_value=4e-124) Photosystem I P700 chlorophyll a apoprotein A1 OS=Nicotiana tabacum GN=psaA PE=3 SV=2;; (*ITAG) ATCG00350.1 (e_value=2e-122) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc12g033060.1.1 (e_value=4e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22377108-22378023 transcript_region:SL2.40ch12:22377108..22378023+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A2 (AHRD V1 ***- A7Y3D1_IPOPU); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00020555g0008.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|4|0|286; (*SWP) sp|Q0ZJ20|PSAA_VITVI (e_value=5e-109) Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=6e-109) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc02g020960.1.1 (e_value=1e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:11444690-11446165 transcript_region:SL2.40ch02:11444690..11446165- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D5MAH7_PEA); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00027614g0005.1 protein AED:0.10 eAED:0.10 QI:273|1|1|1|1|1|7|433|327; (*SWP) sp|A4ZGQ8|HMT1_BRAOT (e_value=0.0) Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1;; (*TAIR) AT3G25900.1 (e_value=0.0) | Symbols: HMT-1, ATHMT-1 | Homocysteine S-methyltransferase family protein | chr3:9480964-9482684 FORWARD LENGTH=326;; (*ITAG) Solyc09g065520.2.1 (e_value=2e-132) genomic_reference:SL2.40ch09 gene_region:59228854-59238380 transcript_region:SL2.40ch09:59228854..59238380- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9GSK5_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00021728g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|401; (*SWP) sp|Q8LE47|PPR87_ARATH (e_value=7e-161) Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2 SV=2;; (*TAIR) AT1G61870.1 (e_value=5e-162) | Symbols: PPR336 | pentatricopeptide repeat 336 | chr1:22865326-22866552 REVERSE LENGTH=408;; (*ITAG) Solyc10g005280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:213419-214627 transcript_region:SL2.40ch10:213419..214627+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVE2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000491g0008.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|478|654; (*SWP) sp|Q39117|TGT2_ARATH (e_value=2e-47) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76880.1 (e_value=3e-61) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:28865594-28867931 FORWARD LENGTH=603;; (*ITAG) Solyc12g056510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47802588-47804951 transcript_region:SL2.40ch12:47802588..47804951- go_terms:GO:0003677 functional_description:"GT-2 factor (Fragment) (AHRD V1 *--- Q8W240_SOYBN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00000491g0010.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|107 NbS00000491g0009.1 protein AED:0.31 eAED:0.48 QI:0|0|0|1|0|0|2|0|94; (*ITAG) Solyc03g044360.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00038612g0005.1 protein AED:0.08 eAED:0.14 QI:0|0|0|1|0|0|3|0|422; (*SWP) sp|P81898|PNAA_PRUDU (e_value=2e-13) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT5G05480.1 (e_value=2e-49) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr5:1622338-1624164 REVERSE LENGTH=608;; (*ITAG) Solyc06g051010.1.1 (e_value=4e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:30593637-30595409 transcript_region:SL2.40ch06:30593637..30595409- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00002443g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.92|1|0.91|0.92|13|0|481; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=0.0) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=0.0) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc01g067590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68779437-68791512 transcript_region:SL2.40ch01:68779437..68791512- go_terms:GO:0019901,GO:0004679 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0019901,GO:0004679 NbS00002443g0101.1 protein AED:0.05 eAED:0.06 QI:439|0.83|0.61|0.92|0.91|0.84|13|175|1667 NbS00002443g0112.1 protein AED:0.20 eAED:0.20 QI:38|0|0.66|1|0.5|0.33|3|8|216 NbS00002443g0104.1 protein AED:0.86 eAED:0.86 QI:0|-1|0|1|-1|1|1|0|78 NbS00002443g0113.1 protein AED:0.24 eAED:0.27 QI:0|0|0|1|0|0|2|0|75 NbS00002443g0205.1 protein AED:0.00 eAED:0.00 QI:81|1|1|1|1|1|2|177|123 NbS00002443g0217.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.57|1|1|1|7|0|562 NbS00002443g0216.1 protein AED:0.21 eAED:0.21 QI:0|0.85|0.37|1|0.85|0.75|8|331|323 NbS00034903g0004.1 protein AED:0.10 eAED:0.10 QI:51|0.88|0.9|1|0.77|0.8|10|312|335; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=1e-157) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.1 (e_value=8e-159) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591091 REVERSE LENGTH=339;; (*ITAG) Solyc09g075900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63034804-63038210 transcript_region:SL2.40ch09:63034804..63038210- go_terms:GO:0016768,GO:0010487 functional_description:"Spermidine synthase (AHRD V1 **** D5MHP1_9BACT); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0016768,GO:0010487 NbS00019844g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|225; (*TAIR) AT5G19900.1 (e_value=1e-61) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g015020.2.1 (e_value=3e-58) genomic_reference:SL2.40ch01 gene_region:16607107-16609448 transcript_region:SL2.40ch01:16607107..16609448+ functional_description:"PRLI-interacting factor A (Fragment) (AHRD V1 *-*- Q9FUB4_ARATH)"; NbS00019844g0007.1 protein AED:0.25 eAED:0.25 QI:20|0.66|0.75|0.92|0.81|0.82|28|317|1161; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=0.0) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2;; (*TAIR) AT3G07160.1 (e_value=0.0) | Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890;; (*ITAG) Solyc01g006350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:934429-952385 transcript_region:SL2.40ch01:934429..952385- go_terms:GO:0016757 functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8TE42_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00050434g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.81|0.75|12|288|662; (*SWP) sp|O65530|PEK14_ARATH (e_value=4e-59) Proline-rich receptor-like protein kinase PERK14 OS=Arabidopsis thaliana GN=PERK14 PE=2 SV=1;; (*TAIR) AT1G51940.1 (e_value=0.0) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr1:19296092-19298941 REVERSE LENGTH=651;; (*ITAG) Solyc03g121050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63329506-63336332 transcript_region:SL2.40ch03:63329506..63336332- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like kinase (AHRD V1 *-*- C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00048194g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc05g042170.1.1 (e_value=7e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:54236198-54236482 transcript_region:SL2.40ch05:54236198..54236482- functional_description:"Unknown Protein (AHRD V1)"; NbC25094730g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|186; (*TAIR) AT1G73680.1 (e_value=8e-108) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631;; (*ITAG) Solyc03g119060.2.1 (e_value=7e-119) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00038736g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|369; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=9e-63) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT1G58410.1 (e_value=4e-23) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21701286-21704255 REVERSE LENGTH=899;; (*ITAG) Solyc05g007170.2.1 (e_value=4e-133) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00038736g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|118; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=4e-36) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT1G50180.1 (e_value=3e-17) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc05g013280.2.1 (e_value=7e-49) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00003844g0006.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|486; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-134) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30760.1 (e_value=4e-159) | Symbols: | FAD-binding Berberine family protein | chr1:10918321-10920441 FORWARD LENGTH=534;; (*ITAG) Solyc02g070110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34521770-34523362 transcript_region:SL2.40ch02:34521770..34523362- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00003844g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|257|566; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=5e-155) Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2;; (*TAIR) AT1G30690.2 (e_value=4e-156) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540;; (*ITAG) Solyc02g070210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34552976-34555462 transcript_region:SL2.40ch02:34552976..34555462- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C6HEF9_AJECH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00003844g0004.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|430; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=6e-155) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30700.1 (e_value=1e-172) | Symbols: | FAD-binding Berberine family protein | chr1:10892623-10894437 FORWARD LENGTH=527;; (*ITAG) Solyc02g070090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34506045-34507649 transcript_region:SL2.40ch02:34506045..34507649- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFN2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00003844g0009.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|1|1|2|0|190; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=3e-43) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20820.1 (e_value=1e-46) | Symbols: | FAD-binding Berberine family protein | chr4:11150160-11151758 FORWARD LENGTH=532;; (*ITAG) Solyc02g070110.1.1 (e_value=4e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34521770-34523362 transcript_region:SL2.40ch02:34521770..34523362- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00003844g0012.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|186; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-23) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30760.1 (e_value=5e-32) | Symbols: | FAD-binding Berberine family protein | chr1:10918321-10920441 FORWARD LENGTH=534;; (*ITAG) Solyc02g070110.1.1 (e_value=5e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34521770-34523362 transcript_region:SL2.40ch02:34521770..34523362- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00003844g0002.1 protein AED:0.21 eAED:0.22 QI:0|0.64|0.53|0.86|1|1|15|0|571; (*SWP) sp|Q9SW44|RH16_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1;; (*TAIR) AT4G34910.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:16631661-16634834 FORWARD LENGTH=626;; (*ITAG) Solyc02g070100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34513483-34520188 transcript_region:SL2.40ch02:34513483..34520188+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- C6LRM7_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00026466g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|260; (*SWP) sp|P0C035|ATL60_ARATH (e_value=3e-33) RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2 SV=1;; (*TAIR) AT1G53820.1 (e_value=3e-34) | Symbols: | RING/U-box superfamily protein | chr1:20091491-20092423 FORWARD LENGTH=310;; (*ITAG) Solyc12g055710.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47038935-47039699 transcript_region:SL2.40ch12:47038935..47039699- go_terms:GO:0008270 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001924g0003.1 protein AED:0.71 eAED:0.86 QI:0|0|0|0.66|1|1|3|0|70 NbS00001924g0013.1 protein AED:0.27 eAED:0.31 QI:0|0.36|0.33|0.83|0.72|0.75|12|0|380; (*TAIR) AT1G23110.4 (e_value=5e-114) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70900.1). | chr1:8196608-8197665 REVERSE LENGTH=248;; (*ITAG) Solyc04g007730.2.1 (e_value=2e-122) genomic_reference:SL2.40ch04 gene_region:1405640-1410539 transcript_region:SL2.40ch04:1405640..1410539- functional_description:"Unknown Protein (AHRD V1)"; NbS00020952g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.33|0.66|1|1|3|45|79 NbS00009882g0003.1 protein AED:0.04 eAED:0.04 QI:180|1|1|1|0.85|0.87|8|424|359; (*SWP) sp|Q40143|CYSP3_SOLLC (e_value=0.0) Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1;; (*TAIR) AT3G45310.1 (e_value=0.0) | Symbols: | Cysteine proteinases superfamily protein | chr3:16628704-16630473 REVERSE LENGTH=358;; (*ITAG) Solyc07g041900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51828739-51831068 transcript_region:SL2.40ch07:51828739..51831068- go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin L-like cysteine proteinase (AHRD V1 **** A7LJ78_DERVA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0030984,GO:0004197 NbS00027390g0006.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|4|0|213; (*SWP) sp|P08995|NO26_SOYBN (e_value=1e-65) Nodulin-26 OS=Glycine max PE=1 SV=2;; (*TAIR) AT4G19030.1 (e_value=3e-63) | Symbols: NLM1, NIP1;1, AT-NLM1, ATNLM1 | NOD26-like major intrinsic protein 1 | chr4:10421728-10423409 REVERSE LENGTH=296;; (*ITAG) Solyc12g057050.1.1 (e_value=2e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48469471-48471614 transcript_region:SL2.40ch12:48469471..48471614- go_terms:GO:0016020,GO:0016021 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0016020,GO:0016021 NbS00027390g0009.1 protein AED:0.16 eAED:0.17 QI:0|0.75|0.6|1|1|1|5|0|606; (*SWP) sp|Q43125|CRY1_ARATH (e_value=0.0) Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2;; (*TAIR) AT4G08920.1 (e_value=0.0) | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome 1 | chr4:5724260-5726905 FORWARD LENGTH=681;; (*ITAG) Solyc04g074180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57772528-57777909 transcript_region:SL2.40ch04:57772528..57777909+ go_terms:GO:0042803 functional_description:"Cryptochrome 1a"; GO:0042803 NbS00040147g0005.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.6|1|1|5|0|382; (*SWP) sp|Q6K7E6|ERF1_ORYSJ (e_value=4e-59) Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1;; (*TAIR) AT1G53910.2 (e_value=2e-53) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=358;; (*ITAG) Solyc03g123500.2.1 (e_value=4e-174) genomic_reference:SL2.40ch03 gene_region:64386170-64388613 transcript_region:SL2.40ch03:64386170..64388613+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 ***- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001013g0007.1 protein AED:0.01 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|248; (*TAIR) AT3G32930.1 (e_value=1e-107) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:13489595-13490704 FORWARD LENGTH=249;; (*ITAG) Solyc01g006020.2.1 (e_value=1e-156) genomic_reference:SL2.40ch01 gene_region:679453-682301 transcript_region:SL2.40ch01:679453..682301- functional_description:"At3g32930-like protein (Fragment) (AHRD V1 *-*- B3SKU7_ARAHA)"; NbS00001013g0009.1 protein AED:0.13 eAED:0.13 QI:161|0.94|0.9|1|0.89|0.75|20|582|877; (*SWP) sp|Q9C895|BRE1B_ARATH (e_value=0.0) E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2;; (*TAIR) AT1G55250.3 (e_value=0.0) | Symbols: HUB2 | histone mono-ubiquitination 2 | chr1:20607214-20612302 FORWARD LENGTH=899;; (*ITAG) Solyc01g006040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:716528-726655 transcript_region:SL2.40ch01:716528..726655- go_terms:GO:0042803 functional_description:"E3 ubiquitin-protein ligase BRE1-like 2 (AHRD V1 ***- BRE1B_ARATH)"; GO:0042803 NbS00001013g0011.1 protein AED:0.16 eAED:0.16 QI:234|1|0.88|1|0.87|0.77|9|56|803; (*SWP) sp|Q54BM5|BBP_DICDI (e_value=1e-14) Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1;; (*TAIR) AT3G32940.1 (e_value=7e-62) | Symbols: | RNA-binding KH domain-containing protein | chr3:13491089-13493630 REVERSE LENGTH=607;; (*ITAG) Solyc01g006010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:671174-678641 transcript_region:SL2.40ch01:671174..678641+ functional_description:"Branchpoint-bridging protein (AHRD V1 *--- C1FYD8_PARBD)"; NbS00009307g0005.1 protein AED:0.07 eAED:0.07 QI:31|0.85|0.87|1|0.85|0.75|8|395|268; (*SWP) sp|Q66L17|HDDC2_XENLA (e_value=5e-50) HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1;; (*TAIR) AT2G23820.1 (e_value=1e-89) | Symbols: | Metal-dependent phosphohydrolase | chr2:10140595-10142552 FORWARD LENGTH=245;; (*ITAG) Solyc07g006200.2.1 (e_value=7e-117) genomic_reference:SL2.40ch07 gene_region:1027967-1032985 transcript_region:SL2.40ch07:1027967..1032985- go_terms:GO:0005515 functional_description:"HD domain containing protein (AHRD V1 ***- B6TWI3_MAIZE); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0005515 NbS00009307g0002.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.2|1|1|5|0|232; (*SWP) sp|Q75K12|NT5D_DICDI (e_value=3e-36) 5'-nucleotidase domain-containing protein DDB_G0275467 OS=Dictyostelium discoideum GN=DDB_G0275467 PE=3 SV=1;; (*TAIR) AT2G23890.1 (e_value=7e-94) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553;; (*ITAG) Solyc07g006190.2.1 (e_value=2e-122) genomic_reference:SL2.40ch07 gene_region:1015061-1025947 transcript_region:SL2.40ch07:1015061..1025947- go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-nucleotidase (AHRD V1 **** D3B8C8_POLPA); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00032207g0005.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|1|1|2|0|242; (*ITAG) Solyc02g090560.2.1 (e_value=9e-51) genomic_reference:SL2.40ch02 gene_region:46674600-46677536 transcript_region:SL2.40ch02:46674600..46677536- go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00032207g0006.1 protein AED:0.38 eAED:0.44 QI:161|0|0.5|1|1|1|2|0|94 NbS00032207g0007.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|88 NbS00052375g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|4|95|754; (*TAIR) AT5G62170.1 (e_value=9e-65) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). | chr5:24973115-24975475 REVERSE LENGTH=703;; (*ITAG) Solyc03g006840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1353900-1356748 transcript_region:SL2.40ch03:1353900..1356748+ functional_description:"Genomic DNA chromosome 5 P1 clone MTG10 (AHRD V1 ***- Q9FIS0_ARATH)"; NbS00003709g0007.1 protein AED:0.22 eAED:0.22 QI:114|0|0.5|1|0|0|2|0|365; (*SWP) sp|P27666|E13F_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G16260.1 (e_value=2e-130) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g060020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62224181-62226272 transcript_region:SL2.40ch01:62224181..62226272- go_terms:GO:0005975 functional_description:"Beta-glucanase (AHRD V1 ***- Q53X08_NICPL); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00003709g0105.1 protein AED:0.18 eAED:0.37 QI:0|0|0|1|1|1|2|0|141 NbS00003709g0101.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|162 NbS00003709g0116.1 protein AED:0.09 eAED:0.09 QI:49|0.81|0.83|0.91|0.63|0.75|12|180|583 NbS00003709g0115.1 protein AED:0.29 eAED:0.29 QI:0|1|0.25|1|1|1|4|0|162 NbS00045694g0006.1 protein AED:0.18 eAED:0.18 QI:54|0.66|0.5|1|0|0.25|4|41|365; (*SWP) sp|P47082|AVT1_YEAST (e_value=4e-21) Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1;; (*TAIR) AT3G28960.1 (e_value=2e-118) | Symbols: | Transmembrane amino acid transporter family protein | chr3:10984245-10985767 REVERSE LENGTH=405;; (*ITAG) Solyc05g053970.2.1 (e_value=9e-159) genomic_reference:SL2.40ch05 gene_region:63122564-63124254 transcript_region:SL2.40ch05:63122564..63124254+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9HY05_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00045694g0005.1 protein AED:0.00 eAED:0.00 QI:209|1|1|1|1|1|4|320|148; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=9e-100) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=6e-87) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=1e-100) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00025718g0003.1 protein AED:0.02 eAED:0.03 QI:1|0|0.5|1|0|0.5|2|746|195; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=3e-45) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=3e-46) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc06g074140.1.1 (e_value=2e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42247306-42248568 transcript_region:SL2.40ch06:42247306..42248568+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00025718g0004.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|461; (*SWP) sp|Q9T0K5|LRX3_ARATH (e_value=9e-155) Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1;; (*TAIR) AT4G13340.1 (e_value=7e-156) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:7758610-7760892 FORWARD LENGTH=760;; (*ITAG) Solyc06g074150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42249811-42251423 transcript_region:SL2.40ch06:42249811..42251423+ go_terms:GO:0005515,GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0005199 NbS00025718g0017.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0.5|0.33|3|0|381; (*SWP) sp|Q9SF15|PUB24_ARATH (e_value=3e-82) E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24 PE=1 SV=1;; (*TAIR) AT3G11840.1 (e_value=2e-83) | Symbols: PUB24 | plant U-box 24 | chr3:3736578-3738250 REVERSE LENGTH=470;; (*ITAG) Solyc06g074140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42247306-42248568 transcript_region:SL2.40ch06:42247306..42248568+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 24 (AHRD V1 ***- D7LAS1_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00025718g0002.1 protein AED:0.20 eAED:0.20 QI:64|1|0.75|1|1|1|4|0|610; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=8e-91) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=6e-92) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc06g074120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42231957-42236664 transcript_region:SL2.40ch06:42231957..42236664+ go_terms:GO:0046982,GO:0042803 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0046982,GO:0042803 NbS00021116g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.6|0.8|0.25|0.2|5|502|180; (*TAIR) AT3G01435.1 (e_value=5e-47) | Symbols: | Expressed protein | chr3:166853-167984 REVERSE LENGTH=115;; (*ITAG) Solyc04g014700.2.1 (e_value=7e-61) genomic_reference:SL2.40ch04 gene_region:4961928-4964016 transcript_region:SL2.40ch04:4961928..4964016- go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019404 Mediator complex, subunit Med11 "; GO:0016592 NbS00021116g0005.1 protein AED:0.30 eAED:0.59 QI:0|0|0|1|0|0|2|0|98; (*SWP) sp|Q2MIC5|YCF2_SOLBU (e_value=3e-23) Protein ycf2 OS=Solanum bulbocastanum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-18) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00021116g0006.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|2|0|76; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=8e-14) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) Solyc03g078010.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:42455418-42455918 transcript_region:SL2.40ch03:42455418..42455918- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00033382g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|197; (*SWP) sp|Q40588|ASO_TOBAC (e_value=2e-109) L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1;; (*TAIR) AT5G21105.2 (e_value=6e-96) | Symbols: | Plant L-ascorbate oxidase | chr5:7174321-7177409 FORWARD LENGTH=397;; (*ITAG) Solyc01g008830.1.1 (e_value=3e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2854277-2862504 transcript_region:SL2.40ch01:2854277..2862504+ go_terms:GO:0005576,GO:0055114 functional_description:"L-ascorbate oxidase (AHRD V1 ***- B9HQ45_POPTR); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants "; GO:0005576,GO:0055114 NbS00055075g0006.1 protein AED:0.09 eAED:0.09 QI:64|0|0|1|0|0|3|0|527; (*SWP) sp|Q9C8D4|AAE11_ARATH (e_value=0.0) Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1;; (*TAIR) AT1G66120.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:24612640-24614690 FORWARD LENGTH=572;; (*ITAG) Solyc02g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39931191-39933262 transcript_region:SL2.40ch02:39931191..39933262+ go_terms:GO:0004467,GO:0018858 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** D0J2H7_COMT2); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467,GO:0018858 NbS00038547g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.71|1|1|1|7|0|446; (*SWP) sp|Q05753|AKRP_ARATH (e_value=5e-143) Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2;; (*TAIR) AT5G66055.1 (e_value=4e-144) | Symbols: EMB16, EMB2036, AKRP | ankyrin repeat protein | chr5:26417425-26419234 REVERSE LENGTH=435;; (*ITAG) Solyc02g061820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:27923145-27927547 transcript_region:SL2.40ch02:27923145..27927547- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain 1 (AHRD V1 *--- B5AZT4_CRIGR); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00038547g0010.1 protein AED:0.29 eAED:0.29 QI:115|1|1|1|0.66|0.71|7|344|214; (*SWP) sp|Q10422|YDC1_SCHPO (e_value=1e-19) Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25G10.01 PE=1 SV=1;; (*TAIR) AT4G35785.1 (e_value=3e-55) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=238;; (*ITAG) Solyc02g061840.2.1 (e_value=6e-71) genomic_reference:SL2.40ch02 gene_region:27933230-27938206 transcript_region:SL2.40ch02:27933230..27938206- go_terms:GO:0003676,GO:0000166 functional_description:"Nuclear SR-like RNA binding protein (AHRD V1 *--- A8JAT7_CHLRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00047740g0010.1 protein AED:0.01 eAED:0.02 QI:214|0.8|0.66|1|0.8|0.66|6|281|666; (*ITAG) Solyc06g008150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00047740g0006.1 protein AED:0.19 eAED:0.27 QI:0|0|0|1|1|1|2|0|83 NbS00047740g0003.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.33|1|1|3|0|125; (*SWP) sp|P49690|RL23_ARATH (e_value=2e-86) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.2 (e_value=1e-87) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167611-1168308 FORWARD LENGTH=125;; (*ITAG) Solyc09g090610.2.1 (e_value=5e-88) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00047740g0011.1 protein AED:0.32 eAED:0.32 QI:49|1|0.5|1|0.33|0.75|4|0|275; (*SWP) sp|Q940U6|FLU_ARATH (e_value=7e-100) Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1;; (*TAIR) AT3G14110.1 (e_value=5e-101) | Symbols: FLU | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4676222-4677602 REVERSE LENGTH=316;; (*ITAG) Solyc06g008160.2.1 (e_value=3e-140) genomic_reference:SL2.40ch06 gene_region:2042760-2050854 transcript_region:SL2.40ch06:2042760..2050854- go_terms:GO:0005488 functional_description:"Chloroplast FLU-like protein (Fragment) (AHRD V1 *--- D2K2R8_PICAB); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00012645g0006.1 protein AED:0.06 eAED:0.06 QI:550|1|0.9|1|0.88|0.8|10|666|774; (*SWP) sp|Q921R4|DJC14_MOUSE (e_value=3e-16) DnaJ homolog subfamily C member 14 OS=Mus musculus GN=Dnajc14 PE=2 SV=2;; (*TAIR) AT5G49580.1 (e_value=2e-160) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:20123823-20126813 REVERSE LENGTH=695;; (*ITAG) Solyc07g026810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:31740324-31752580 transcript_region:SL2.40ch07:31740324..31752580- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2KX40_9FIRM); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00024669g0003.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|291; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=1e-175) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=2e-72) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc07g049660.2.1 (e_value=8e-157) genomic_reference:SL2.40ch07 gene_region:57349065-57351095 transcript_region:SL2.40ch07:57349065..57351095+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00039351g0004.1 protein AED:0.18 eAED:0.18 QI:32|0.75|0.8|1|0.75|0.8|5|230|568; (*TAIR) AT3G26750.1 (e_value=2e-113) | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE LENGTH=526;; (*ITAG) Solyc03g033720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9601084-9606368 transcript_region:SL2.40ch03:9601084..9606368- functional_description:"Genomic DNA chromosome 3 P1 clone MDJ14 (AHRD V1 ***- Q9LW36_ARATH)"; NbS00028054g0004.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|2|0|74 NbS00006474g0015.1 protein AED:0.10 eAED:0.10 QI:476|0.83|0.61|1|0.58|0.46|13|0|648; (*SWP) sp|Q9FJX0|PPIL2_ARATH (e_value=0.0) Peptidyl-prolyl cis-trans isomerase-like 2 OS=Arabidopsis thaliana GN=PUB49 PE=2 SV=1;; (*TAIR) AT5G67530.1 (e_value=0.0) | Symbols: ATPUB49, PUB49 | plant U-box 49 | chr5:26941260-26943878 FORWARD LENGTH=595;; (*ITAG) Solyc02g092380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48041305-48046787 transcript_region:SL2.40ch02:48041305..48046787- go_terms:GO:0005515,GO:0004842 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- C0SDY7_PARBP); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005515,GO:0004842 NbS00006474g0005.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|507; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=0.0) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=0.0) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc02g092370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48034737-48036260 transcript_region:SL2.40ch02:48034737..48036260- go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9NAS9_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00006474g0011.1 protein AED:0.57 eAED:0.57 QI:241|0|0.25|0.25|1|1|4|0|104 NbS00006474g0002.1 protein AED:0.29 eAED:0.30 QI:0|1|0.5|1|1|1|2|0|450; (*TAIR) AT3G49880.1 (e_value=0.0) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc02g092360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48028336-48032058 transcript_region:SL2.40ch02:48028336..48032058+ go_terms:GO:0005975,GO:0004867 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975,GO:0004867 NbS00006474g0018.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|95; (*TAIR) AT3G49880.1 (e_value=2e-47) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc02g092360.2.1 (e_value=2e-59) genomic_reference:SL2.40ch02 gene_region:48028336-48032058 transcript_region:SL2.40ch02:48028336..48032058+ go_terms:GO:0005975,GO:0004867 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975,GO:0004867 NbS00006474g0016.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|0|0|2|0|84 NbS00006474g0106.1 protein AED:0.38 eAED:0.39 QI:131|0.83|0.57|1|0.66|0.71|7|0|219 NbS00006474g0109.1 protein AED:0.25 eAED:0.30 QI:288|0.71|0.75|1|0.57|0.62|8|0|471 NbS00023041g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|1|1|3|0|1121; (*TAIR) AT1G03080.1 (e_value=0.0) | Symbols: | kinase interacting (KIP1-like) family protein | chr1:731794-737332 REVERSE LENGTH=1733;; (*ITAG) Solyc09g065550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59282684-59290446 transcript_region:SL2.40ch09:59282684..59290446+ functional_description:"Kinase interacting family protein (AHRD V1 *--- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00023041g0004.1 protein AED:0.69 eAED:0.70 QI:0|0|0|0.5|1|1|2|0|819; (*TAIR) AT1G03080.1 (e_value=9e-73) | Symbols: | kinase interacting (KIP1-like) family protein | chr1:731794-737332 REVERSE LENGTH=1733;; (*ITAG) Solyc09g065550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59282684-59290446 transcript_region:SL2.40ch09:59282684..59290446+ functional_description:"Kinase interacting family protein (AHRD V1 *--- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00012977g0002.1 protein AED:0.06 eAED:0.11 QI:1542|0|0.5|1|0|0|2|0|110 NbS00024266g0009.1 protein AED:0.19 eAED:0.19 QI:132|1|0|1|1|1|3|0|760 NbS00054743g0013.1 protein AED:0.15 eAED:0.15 QI:0|1|0.94|1|0.87|0.76|17|287|655; (*SWP) sp|A0MFS9|CACLC_ARATH (e_value=0.0) Anoctamin-like protein At1g73020 OS=Arabidopsis thaliana GN=At1g73020 PE=2 SV=1;; (*TAIR) AT1G73020.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). | chr1:27469714-27473181 REVERSE LENGTH=665;; (*ITAG) Solyc03g121350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63518526-63524599 transcript_region:SL2.40ch03:63518526..63524599- functional_description:"Anoctamin-like protein (AHRD V1 ***- D0MXY8_PHYIN); contains Interpro domain(s) IPR007632 Protein of unknown function DUF590 "; NbS00054743g0012.1 protein AED:0.24 eAED:0.28 QI:5|0.75|0|1|0.75|0.6|5|0|743; (*SWP) sp|P59278|Y1745_ARATH (e_value=8e-89) Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2;; (*TAIR) AT3G21295.1 (e_value=3e-94) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:7489635-7492296 FORWARD LENGTH=645;; (*ITAG) Solyc03g121320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63507750-63513367 transcript_region:SL2.40ch03:63507750..63513367+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbS00054743g0008.1 protein AED:0.31 eAED:0.31 QI:64|1|1|1|1|1|3|248|177; (*SWP) sp|O82204|RL281_ARATH (e_value=1e-73) 60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1;; (*TAIR) AT2G19730.3 (e_value=1e-74) | Symbols: | Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143;; (*ITAG) Solyc03g121330.2.1 (e_value=4e-94) genomic_reference:SL2.40ch03 gene_region:63514413-63516687 transcript_region:SL2.40ch03:63514413..63516687+ go_terms:GO:0005515 functional_description:"60S ribosomal protein L28 (AHRD V1 ***- B3TLS3_ELAGV); contains Interpro domain(s) IPR002672 Ribosomal protein L28e "; GO:0005515 NbS00053298g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0.33|1|1|1|3|0|272; (*SWP) sp|Q93YV9|SKIP8_ARATH (e_value=4e-112) F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1;; (*TAIR) AT4G10925.3 (e_value=3e-113) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr4:6702987-6704283 REVERSE LENGTH=231;; (*ITAG) Solyc08g082560.2.1 (e_value=1e-171) genomic_reference:SL2.40ch08 gene_region:62472243-62478469 transcript_region:SL2.40ch08:62472243..62478469+ functional_description:"F-box family protein (AHRD V1 ***- B9GXK0_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00053298g0005.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|0.5|1|3|164|171; (*SWP) sp|O65155|KELP_ARATH (e_value=2e-49) RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1;; (*TAIR) AT4G10920.2 (e_value=1e-50) | Symbols: KELP | transcriptional coactivator p15 (PC4) family protein (KELP) | chr4:6697894-6699103 REVERSE LENGTH=165;; (*ITAG) Solyc08g082580.2.1 (e_value=5e-67) genomic_reference:SL2.40ch08 gene_region:62481272-62484580 transcript_region:SL2.40ch08:62481272..62484580+ go_terms:GO:0030528,GO:0005515 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 *-*- B9EM37_SALSA); contains Interpro domain(s) IPR017415 RNA polymerase II transcriptional coactivator KELP "; GO:0030528,GO:0005515 NbS00053298g0008.1 protein AED:0.26 eAED:0.31 QI:0|1|0.5|1|0|0|2|0|187; (*TAIR) AT5G42070.1 (e_value=5e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16819118-16820119 REVERSE LENGTH=164;; (*ITAG) Solyc08g082570.2.1 (e_value=4e-67) genomic_reference:SL2.40ch08 gene_region:62478591-62480879 transcript_region:SL2.40ch08:62478591..62480879+ functional_description:"CccP Conserved Cys-containing protein (IC) (AHRD V1 *-*- Q01E94_OSTTA)"; NbS00010009g0006.1 protein AED:0.17 eAED:0.29 QI:488|0|0.5|1|0|0|2|0|65 NbS00010009g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|21|408|1058; (*SWP) sp|O04379|AGO1_ARATH (e_value=0.0) Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1;; (*TAIR) AT1G48410.1 (e_value=0.0) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048;; (*ITAG) Solyc06g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00023986g0004.1 protein AED:0.23 eAED:0.23 QI:167|1|1|1|1|1|3|289|301; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=3e-82) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G16600.1 (e_value=6e-92) | Symbols: MYB43, AtMYB43 | myb domain protein 43 | chr5:5438291-5440214 FORWARD LENGTH=327;; (*ITAG) Solyc11g011050.1.1 (e_value=3e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4106566-4108390 transcript_region:SL2.40ch11:4106566..4108390+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9SPG7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00041528g0004.1 protein AED:0.15 eAED:0.15 QI:152|0.72|0.66|1|0.09|0.25|12|268|529; (*SWP) sp|Q75RY2|PAIR1_ORYSJ (e_value=2e-18) Protein PAIR1 OS=Oryza sativa subsp. japonica GN=PAIR1 PE=2 SV=1;; (*TAIR) AT1G01690.1 (e_value=4e-47) | Symbols: ATPRD3, PRD3 | putative recombination initiation defects 3 | chr1:249242-252221 FORWARD LENGTH=449;; (*ITAG) Solyc01g094650.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:77854038-77859401 transcript_region:SL2.40ch01:77854038..77859401- functional_description:"Protein PAIR1 (AHRD V1 *-*- PAIR1_ORYSJ)"; NbS00002150g0022.1 protein AED:0.09 eAED:0.09 QI:27|1|1|1|0.37|0.66|9|13|524; (*SWP) sp|Q9M115|ZDH16_ARATH (e_value=4e-135) Probable S-acyltransferase At4g01730 OS=Arabidopsis thaliana GN=At4g01730 PE=2 SV=2;; (*TAIR) AT4G01730.1 (e_value=3e-136) | Symbols: | DHHC-type zinc finger family protein | chr4:749574-752034 FORWARD LENGTH=508;; (*ITAG) Solyc01g079100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70675984-70679430 transcript_region:SL2.40ch01:70675984..70679430+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00002150g0024.1 protein AED:0.11 eAED:0.13 QI:30|0.62|0.22|0.88|0.37|0.33|9|341|411; (*SWP) sp|Q7KWM5|ALG2_DICDI (e_value=4e-103) Alpha-1,3/1,6-mannosyltransferase ALG2 OS=Dictyostelium discoideum GN=alg2 PE=3 SV=1;; (*TAIR) AT1G78800.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:29625859-29627941 REVERSE LENGTH=403;; (*ITAG) Solyc06g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44575895-44579139 transcript_region:SL2.40ch06:44575895..44579139- go_terms:GO:0004378,GO:0033164 functional_description:"Alpha-1 3-mannosyltransferase ALG2 (AHRD V1 **-* D3TN82_GLOMM); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0004378,GO:0033164 NbS00002150g0021.1 protein AED:0.25 eAED:0.25 QI:0|0.85|0.75|1|1|1|8|324|409; (*SWP) sp|O24163|PPOC_TOBAC (e_value=0.0) Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1;; (*TAIR) AT4G01690.1 (e_value=0.0) | Symbols: PPOX, HEMG1, PPO1 | Flavin containing amine oxidoreductase family | chr4:729929-732309 FORWARD LENGTH=537;; (*ITAG) Solyc01g079090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70668181-70673636 transcript_region:SL2.40ch01:70668181..70673636+ go_terms:GO:0055114 functional_description:"Protoporphyrinogen oxidase (AHRD V1 ***- O64384_SOLTU); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00002150g0023.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|75; (*TAIR) AT4G01790.1 (e_value=1e-22) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:769868-770728 FORWARD LENGTH=167;; (*ITAG) Solyc01g080830.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:72635275-72637052 transcript_region:SL2.40ch01:72635275..72637052+ go_terms:GO:0004526 functional_description:"cDNA clone J023109D15 full insert sequence (AHRD V1 ***- B7EQP2_ORYSJ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0004526 NbS00002150g0033.1 protein AED:0.00 eAED:0.01 QI:0|1|0.88|1|0.75|0.77|9|185|920; (*TAIR) AT2G46980.2 (e_value=8e-42) | Symbols: | unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). | chr2:19299868-19303429 REVERSE LENGTH=793;; (*ITAG) Solyc01g079080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70658456-70664129 transcript_region:SL2.40ch01:70658456..70664129- functional_description:"Coiled-coil protein (AHRD V1 *-*- B9G5N1_ORYSJ)"; NbS00002150g0034.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.80|1|0.7|0.61|21|2081|700; (*SWP) sp|Q9SYI0|SECA1_ARATH (e_value=0.0) Protein translocase subunit SECA1, chloroplastic OS=Arabidopsis thaliana GN=SECA1 PE=1 SV=2;; (*TAIR) AT4G01800.1 (e_value=0.0) | Symbols: AGY1, AtcpSecA, SECA1 | Albino or Glassy Yellow 1 | chr4:770926-776131 REVERSE LENGTH=1022;; (*ITAG) Solyc01g080840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72636857-72653421 transcript_region:SL2.40ch01:72636857..72653421- go_terms:GO:0006886,GO:0016020 functional_description:"Protein translocase subunit secA (AHRD V1 ***- B9I9A8_POPTR); contains Interpro domain(s) IPR000185 SecA protein "; GO:0006886,GO:0016020 NbS00002150g0028.1 protein AED:0.22 eAED:0.23 QI:43|0.6|0.66|1|0.6|0.5|6|99|357; (*SWP) sp|Q54XK2|SC61A_DICDI (e_value=6e-171) Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1;; (*TAIR) AT2G34250.2 (e_value=0.0) | Symbols: | SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475;; (*ITAG) Solyc10g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1761545-1765548 transcript_region:SL2.40ch10:1761545..1765548- go_terms:GO:0043022,GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0043022,GO:0015450 NbS00002150g0027.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.55|1|1|1|9|0|422; (*SWP) sp|Q9LUH2|ALF5_ARATH (e_value=3e-163) MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1;; (*TAIR) AT3G23560.1 (e_value=2e-164) | Symbols: ALF5 | MATE efflux family protein | chr3:8454361-8456588 REVERSE LENGTH=477;; (*ITAG) Solyc10g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00030498g0002.1 protein AED:0.21 eAED:0.38 QI:0|0|0.5|1|0|0|2|106|84 NbS00012769g0010.1 protein AED:0.07 eAED:0.07 QI:270|1|0.5|1|1|1|2|0|388; (*SWP) sp|Q02527|MGAT3_RAT (e_value=1e-18) Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat3 PE=1 SV=2;; (*TAIR) AT1G67880.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:25454081-25455453 REVERSE LENGTH=390;; (*ITAG) Solyc02g093430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48877750-48880084 transcript_region:SL2.40ch02:48877750..48880084- go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7LPH9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00012769g0008.1 protein AED:0.11 eAED:0.11 QI:215|0.8|0.83|1|0.8|1|6|532|364; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=5e-84) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT5G14490.1 (e_value=1e-90) | Symbols: anac085, NAC085 | NAC domain containing protein 85 | chr5:4670779-4672072 REVERSE LENGTH=350;; (*ITAG) Solyc02g093420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48873416-48876572 transcript_region:SL2.40ch02:48873416..48876572+ go_terms:GO:0003700 functional_description:"NAC domain class transcription factor (AHRD V1 *-** D9ZJ99_MALDO); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00012769g0012.1 protein AED:0.13 eAED:0.16 QI:27|1|0.75|1|1|1|4|0|255; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=9e-48) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G50180.1 (e_value=2e-156) | Symbols: | Protein kinase superfamily protein | chr5:20431116-20432883 FORWARD LENGTH=346;; (*ITAG) Solyc02g093410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48864525-48868381 transcript_region:SL2.40ch02:48864525..48868381+ go_terms:GO:0004708 functional_description:"Protein kinase (AHRD V1 **** Q7XJ65_CUCSA); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004708 NbC25948687g0003.1 protein AED:0.05 eAED:0.05 QI:49|1|1|1|1|1|7|393|212; (*SWP) sp|Q42429|AGL8_SOLTU (e_value=3e-86) Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G69120.1 (e_value=8e-86) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256;; (*ITAG) Solyc02g065730.1.1 (e_value=4e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31459998-31463863 transcript_region:SL2.40ch02:31459998..31463863- go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0046982 NbS00017691g0005.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|1|1|10|0|254; (*SWP) sp|Q8H1G3|MTPC4_ARATH (e_value=3e-116) Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1;; (*TAIR) AT1G51610.1 (e_value=2e-117) | Symbols: | Cation efflux family protein | chr1:19136625-19139621 FORWARD LENGTH=457;; (*ITAG) Solyc06g063250.2.1 (e_value=1e-132) genomic_reference:SL2.40ch06 gene_region:36336794-36343467 transcript_region:SL2.40ch06:36336794..36343467- go_terms:GO:0005385,GO:0003700 functional_description:"Cation diffusion facilitator family transporter (AHRD V1 **** D0LPV3_HALO1); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0005385,GO:0003700 NbS00017691g0016.1 protein AED:0.34 eAED:0.34 QI:182|1|1|1|0.42|0.62|8|279|276; (*TAIR) AT1G51560.1 (e_value=2e-174) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr1:19119900-19121859 REVERSE LENGTH=392;; (*ITAG) Solyc06g063290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36385129-36391488 transcript_region:SL2.40ch06:36385129..36391488+ go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 ***- D8DKZ3_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00017691g0022.1 protein AED:0.25 eAED:0.25 QI:0|0.91|0.92|1|0.83|0.84|13|0|554; (*SWP) sp|Q9C512|MNS1_ARATH (e_value=0.0) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1;; (*TAIR) AT1G51590.1 (e_value=0.0) | Symbols: MNS1, MANIB | alpha-mannosidase 1 | chr1:19128315-19132132 REVERSE LENGTH=560;; (*ITAG) Solyc03g123900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64644578-64660207 transcript_region:SL2.40ch03:64644578..64660207- go_terms:GO:0004571,GO:0004559 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** Q9SEH8_SOYBN); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571,GO:0004559 NbS00017691g0023.1 protein AED:0.65 eAED:0.76 QI:58|1|0|1|1|0.5|2|0|84; (*SWP) sp|Q9LK31|Y3272_ARATH (e_value=9e-30) Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1;; (*TAIR) AT1G51540.1 (e_value=2e-36) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115702-19117381 FORWARD LENGTH=415;; (*ITAG) Solyc03g123910.2.1 (e_value=6e-41) genomic_reference:SL2.40ch03 gene_region:64662295-64666735 transcript_region:SL2.40ch03:64662295..64666735- go_terms:GO:0005515 functional_description:"Kelch-like protein 20 (AHRD V1 ***- KLH20_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00028681g0004.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.75|1|1|4|0|238; (*SWP) sp|O49859|C82A4_SOYBN (e_value=7e-74) Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1;; (*TAIR) AT4G31950.1 (e_value=4e-67) | Symbols: CYP82C3 | cytochrome P450, family 82, subfamily C, polypeptide 3 | chr4:15455163-15457090 FORWARD LENGTH=512;; (*ITAG) Solyc04g079680.2.1 (e_value=6e-114) genomic_reference:SL2.40ch04 gene_region:61643971-61645817 transcript_region:SL2.40ch04:61643971..61645817+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbC25163953g0001.1 protein AED:0.34 eAED:0.34 QI:87|1|0.5|1|0|0|2|0|103; (*ITAG) Solyc06g062460.2.1 (e_value=7e-14) genomic_reference:SL2.40ch06 gene_region:35797457-35799604 transcript_region:SL2.40ch06:35797457..35799604- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *--* Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00018512g0013.1 protein AED:0.10 eAED:0.11 QI:987|0.66|0.57|1|0.5|0.42|7|331|1001; (*TAIR) AT1G27850.1 (e_value=2e-90) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). | chr1:9699265-9703701 FORWARD LENGTH=1148;; (*ITAG) Solyc05g014640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8629401-8637373 transcript_region:SL2.40ch05:8629401..8637373- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00018512g0002.1 protein AED:0.71 eAED:0.74 QI:0|0|0|1|1|1|2|906|299 NbS00022757g0002.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|315; (*SWP) sp|Q7G764|NADO1_ORYSJ (e_value=8e-103) Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1;; (*TAIR) AT1G59960.1 (e_value=2e-105) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326;; (*ITAG) Solyc04g008440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2067145-2069579 transcript_region:SL2.40ch04:2067145..2069579+ go_terms:GO:0045290 functional_description:"Reductase 2 (AHRD V1 ***- Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0045290 NbS00022757g0016.1 protein AED:0.11 eAED:0.11 QI:27|1|1|1|0.85|0.87|8|183|714; (*SWP) sp|Q67UC7|HAK17_ORYSJ (e_value=0.0) Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2;; (*TAIR) AT2G30070.1 (e_value=1e-175) | Symbols: ATKT1, ATKT1P, ATKUP1, KUP1, KT1 | potassium transporter 1 | chr2:12835097-12838466 FORWARD LENGTH=712;; (*ITAG) Solyc04g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2070690-2076522 transcript_region:SL2.40ch04:2070690..2076522- go_terms:GO:0009674 functional_description:"Potassium transporter 17 (AHRD V1 **** B6T8T1_MAIZE); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00022757g0014.1 protein AED:0.23 eAED:0.23 QI:241|1|1|1|1|1|2|327|263; (*SWP) sp|Q55EX9|Y8948_DICDI (e_value=3e-36) Putative methyltransferase DDB_G0268948 OS=Dictyostelium discoideum GN=DDB_G0268948 PE=1 SV=2;; (*TAIR) AT2G41380.1 (e_value=3e-117) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17251981-17252886 FORWARD LENGTH=269;; (*ITAG) Solyc04g040180.2.1 (e_value=2e-174) genomic_reference:SL2.40ch04 gene_region:31093421-31095617 transcript_region:SL2.40ch04:31093421..31095617- go_terms:GO:0008757 functional_description:"S-adenosylmethionine-dependent methyltransferase (Fragment) (AHRD V1 **** B3VXJ7_POPTN); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0008757 NbS00022757g0022.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|4|0|406; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-61) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=3e-48) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc04g011980.1.1 (e_value=4e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4339129-4341774 transcript_region:SL2.40ch04:4339129..4341774+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00022757g0019.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|3|0|250; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-33) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=6e-25) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc08g074250.1.1 (e_value=1e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55526270-55528885 transcript_region:SL2.40ch08:55526270..55528885- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00022757g0018.1 protein AED:0.39 eAED:0.51 QI:0|0|0|1|0|0|3|0|148; (*ITAG) Solyc04g011980.1.1 (e_value=1e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4339129-4341774 transcript_region:SL2.40ch04:4339129..4341774+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00022757g0020.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|2|0|110 NbS00005278g0012.1 protein AED:0.00 eAED:0.00 QI:395|1|1|1|0.66|0.75|4|353|111; (*ITAG) Solyc12g096270.1.1 (e_value=5e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:63608484-63609789 transcript_region:SL2.40ch12:63608484..63609789- functional_description:"G protein gamma subunit 2 (AHRD V1 ***- D0VE83_ORYSI)"; NbS00005278g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|270; (*TAIR) AT5G11890.1 (e_value=1e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3831770-3832633 FORWARD LENGTH=287;; (*ITAG) Solyc12g095980.1.1 (e_value=1e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63414202-63415041 transcript_region:SL2.40ch12:63414202..63415041+ functional_description:"Harpin-induced 1 (AHRD V1 **-- A2Q440_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00005278g0011.1 protein AED:0.67 eAED:0.89 QI:0|0|0|1|1|1|4|0|151; (*SWP) sp|Q8N8Q3|ENDOV_HUMAN (e_value=3e-22) Endonuclease V OS=Homo sapiens GN=ENDOV PE=2 SV=1;; (*TAIR) AT4G31150.2 (e_value=5e-40) | Symbols: | endonuclease V family protein | chr4:15143907-15145469 REVERSE LENGTH=263;; (*ITAG) Solyc12g096280.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63610983-63615175 transcript_region:SL2.40ch12:63610983..63615175- go_terms:GO:0005515 functional_description:"Endonuclease V family protein (AHRD V1 ***- D7MBI5_ARALY); contains Interpro domain(s) IPR007581 Endonuclease V "; GO:0005515 NbS00005278g0018.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.75|1|1|4|0|87; (*ITAG) Solyc12g096260.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63607349-63608295 transcript_region:SL2.40ch12:63607349..63608295+ go_terms:GO:0005262 functional_description:"Ankyrin repeat domain protein (AHRD V1 ***- Q73HK7_WOLPM); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005262 NbS00005278g0017.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|3|0|431; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=2e-85) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G67150.1 (e_value=2e-96) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:26795880-26797226 REVERSE LENGTH=448;; (*ITAG) Solyc12g096250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63603328-63605335 transcript_region:SL2.40ch12:63603328..63605335- go_terms:GO:0016747 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 5 (AHRD V1 **-- Q00M85_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00003466g0008.1 protein AED:0.25 eAED:0.26 QI:144|0.92|0.78|1|0.84|0.92|14|0|452; (*SWP) sp|Q0WKY2|CCR4E_ARATH (e_value=4e-152) Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2;; (*TAIR) AT1G73875.1 (e_value=3e-153) | Symbols: | DNAse I-like superfamily protein | chr1:27781112-27784571 FORWARD LENGTH=454;; (*ITAG) Solyc03g119570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62183847-62189147 transcript_region:SL2.40ch03:62183847..62189147+ functional_description:"Glucose-repressible alcohol dehydrogenase transcriptional effector (AHRD V1 **-- D6RLR7_COPC7); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00003466g0001.1 protein AED:0.39 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|196; (*SWP) sp|Q93ZH0|LYM1_ARATH (e_value=5e-51) LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1;; (*TAIR) AT1G21880.1 (e_value=2e-53) | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682048 FORWARD LENGTH=316;; (*ITAG) Solyc03g119550.1.1 (e_value=9e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62177632-62179385 transcript_region:SL2.40ch03:62177632..62179385- go_terms:GO:0016998 functional_description:"LysM-domain GPI-anchored protein (AHRD V1 ***- Q4VVD8_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00003466g0004.1 protein AED:0.35 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|481; (*SWP) sp|Q9CA27|EF118_ARATH (e_value=1e-15) Ethylene-responsive transcription factor ERF118 OS=Arabidopsis thaliana GN=ERF118 PE=2 SV=1;; (*TAIR) AT1G68550.2 (e_value=9e-17) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc03g119580.1.1 (e_value=1e-89) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62190256-62191413 transcript_region:SL2.40ch03:62190256..62191413- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00023101g0003.1 protein AED:0.11 eAED:0.11 QI:1511|0.66|0.5|1|1|1|4|188|358; (*ITAG) Solyc02g076940.1.1 (e_value=1e-108) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36623406-36625882 transcript_region:SL2.40ch02:36623406..36625882+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023101g0010.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.66|0.5|4|0|319; (*ITAG) Solyc12g042680.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00008041g0013.1 protein AED:0.10 eAED:0.10 QI:200|1|1|1|1|1|5|68|401; (*SWP) sp|Q94B38|GPT2_ARATH (e_value=1e-166) Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2;; (*TAIR) AT1G61800.1 (e_value=8e-168) | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388;; (*ITAG) Solyc05g045670.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56569409-56572667 transcript_region:SL2.40ch05:56569409..56572667+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** Q84Y17_SOLTU); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00008041g0005.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc10g044500.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00008041g0014.1 protein AED:0.29 eAED:0.30 QI:0|0.66|0.5|1|1|0.75|4|0|85; (*SWP) sp|P87027|SPG1_SCHPO (e_value=3e-21) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.3 (e_value=4e-40) | Symbols: SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=292;; (*ITAG) Solyc05g045660.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:56547429-56550136 transcript_region:SL2.40ch05:56547429..56550136+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00008041g0015.1 protein AED:0.49 eAED:0.99 QI:0|0.5|0|0.66|1|0.66|3|0|60 NbS00000497g0003.1 protein AED:0.27 eAED:0.27 QI:19|0.81|0.83|1|0.81|0.75|12|674|411; (*SWP) sp|C6E2H7|ERA_GEOSM (e_value=1e-29) GTPase Era OS=Geobacter sp. (strain M21) GN=era PE=3 SV=1;; (*TAIR) AT5G66470.1 (e_value=3e-123) | Symbols: | RNA binding;GTP binding | chr5:26541986-26544302 REVERSE LENGTH=427;; (*ITAG) Solyc02g077280.2.1 (e_value=3e-171) genomic_reference:SL2.40ch02 gene_region:36842468-36848653 transcript_region:SL2.40ch02:36842468..36848653- go_terms:GO:0003924 functional_description:"GTP-binding protein era homolog (AHRD V1 ***- D0MDG4_RHOM4); contains Interpro domain(s) IPR005662 GTP-binding protein Era "; GO:0003924 NbS00000497g0013.1 protein AED:0.09 eAED:0.09 QI:41|0.75|0.8|1|0.75|0.6|5|196|917; (*SWP) sp|O81078|GLR29_ARATH (e_value=3e-134) Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1;; (*TAIR) AT2G29100.1 (e_value=2e-135) | Symbols: ATGLR2.9, GLR2.9 | glutamate receptor 2.9 | chr2:12501092-12504912 REVERSE LENGTH=940;; (*ITAG) Solyc02g077290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36850890-36854827 transcript_region:SL2.40ch02:36850890..36854827+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H2M2_POPTR); contains Interpro domain(s) IPR015683 Glutamate receptor-related "; GO:0005217,GO:0005515 NbS00000497g0009.1 protein AED:0.12 eAED:0.12 QI:163|1|0.66|1|1|1|3|0|388; (*SWP) sp|O22959|PER19_ARATH (e_value=2e-155) Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1;; (*TAIR) AT2G34060.1 (e_value=2e-156) | Symbols: | Peroxidase superfamily protein | chr2:14384914-14386530 FORWARD LENGTH=346;; (*ITAG) Solyc02g077300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36856712-36858705 transcript_region:SL2.40ch02:36856712..36858705+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 73 (AHRD V1 **** B6U0T8_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00015379g0001.1 protein AED:0.16 eAED:0.17 QI:0|0.72|0.66|1|0.90|0.83|12|644|1046; (*SWP) sp|O08810|U5S1_MOUSE (e_value=0.0) 116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1;; (*TAIR) AT1G06220.1 (e_value=0.0) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987;; (*ITAG) Solyc07g007210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1950540-1956871 transcript_region:SL2.40ch07:1950540..1956871+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor like protein (AHRD V1 **** Q9LNC5_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515,GO:0003746 NbS00025178g0001.1 protein AED:0.14 eAED:0.34 QI:1042|0|0.5|1|0|0.5|2|0|106 NbS00049162g0001.1 protein AED:0.23 eAED:0.23 QI:400|0.90|0.83|1|0.90|0.83|12|169|472; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=9e-14) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT5G26670.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr5:9318456-9320816 FORWARD LENGTH=416;; (*ITAG) Solyc10g038130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:19661877-19666448 transcript_region:SL2.40ch10:19661877..19666448- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00020430g0003.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0|0.8|0.5|0.6|5|0|131; (*TAIR) AT1G79790.1 (e_value=2e-49) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:30016987-30018186 REVERSE LENGTH=245;; (*ITAG) Solyc05g055810.2.1 (e_value=4e-23) genomic_reference:SL2.40ch05 gene_region:64449022-64453332 transcript_region:SL2.40ch05:64449022..64453332+ functional_description:"Catalytic/ hydrolase (AHRD V1 ***- B6TLB5_MAIZE)"; NbS00033137g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|322; (*ITAG) Solyc01g097690.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:80199177-80200192 transcript_region:SL2.40ch01:80199177..80200192+ go_terms:GO:0009664 functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00034958g0004.1 protein AED:0.27 eAED:0.27 QI:240|1|0.88|1|1|0.88|9|0|352; (*TAIR) AT5G09850.1 (e_value=5e-83) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:3063488-3065221 REVERSE LENGTH=353;; (*ITAG) Solyc11g005450.1.1 (e_value=7e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:359146-361493 transcript_region:SL2.40ch11:359146..361493- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 3 (AHRD V1 *--- TCEA3_BOVIN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00007362g0001.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|95; (*TAIR) AT5G50890.1 (e_value=6e-21) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc10g007710.2.1 (e_value=2e-24) genomic_reference:SL2.40ch10 gene_region:1960324-1964209 transcript_region:SL2.40ch10:1960324..1964209+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00007362g0004.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0|0|3|0|209; (*TAIR) AT5G50890.1 (e_value=5e-61) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc10g007710.2.1 (e_value=3e-93) genomic_reference:SL2.40ch10 gene_region:1960324-1964209 transcript_region:SL2.40ch10:1960324..1964209+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00001786g0105.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.83|1|1|1|6|328|410 NbS00001786g0112.1 protein AED:0.26 eAED:0.28 QI:314|0.7|0.63|1|0.6|0.72|11|663|205 NbS00001786g0208.1 protein AED:0.07 eAED:0.07 QI:203|0.5|0.66|1|1|1|3|373|505 NbS00024034g0008.1 protein AED:0.23 eAED:0.23 QI:81|0.92|0.93|1|0.57|0.73|15|602|486; (*SWP) sp|P12955|PEPD_HUMAN (e_value=4e-174) Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3;; (*TAIR) AT4G29490.1 (e_value=0.0) | Symbols: | Metallopeptidase M24 family protein | chr4:14487943-14491321 FORWARD LENGTH=486;; (*ITAG) Solyc07g026960.2.1 (e_value=3e-125) genomic_reference:SL2.40ch07 gene_region:32800091-32805228 transcript_region:SL2.40ch07:32800091..32805228+ go_terms:GO:0009987 functional_description:"Xaa-Pro dipeptidase (AHRD V1 ***- B6TL64_MAIZE); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0009987 NbC25915366g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|0.66|0.5|0.33|3|0|125; (*TAIR) AT5G07330.1 (e_value=3e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:2316064-2316641 FORWARD LENGTH=165;; (*ITAG) Solyc03g118060.2.1 (e_value=4e-54) genomic_reference:SL2.40ch03 gene_region:61097802-61098589 transcript_region:SL2.40ch03:61097802..61098589- functional_description:"Unknown Protein (AHRD V1)"; NbS00018776g0004.1 protein AED:0.21 eAED:0.21 QI:79|1|0.66|1|0.5|0.33|3|100|206; (*TAIR) AT1G78170.1 (e_value=6e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414160-29414941 FORWARD LENGTH=221;; (*ITAG) Solyc04g074080.2.1 (e_value=5e-92) genomic_reference:SL2.40ch04 gene_region:57692112-57693792 transcript_region:SL2.40ch04:57692112..57693792+ go_terms:GO:0005515 functional_description:"WW domain containing protein expressed (AHRD V1 *-*- Q2QVE4_ORYSJ); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00019611g0018.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.45|0.81|0.9|0.90|11|514|1216; (*SWP) sp|Q9FIY7|SM3L3_ARATH (e_value=4e-78) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1;; (*TAIR) AT1G61140.3 (e_value=0.0) | Symbols: EDA16 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr1:22535038-22539756 REVERSE LENGTH=1122;; (*ITAG) Solyc03g006570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1137306-1149345 transcript_region:SL2.40ch03:1137306..1149345- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- A8N3A4_COPC7); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524,GO:0008270 NbS00019611g0022.1 protein AED:0.09 eAED:0.12 QI:0|0.4|0.36|1|0.5|0.45|11|0|754; (*SWP) sp|Q93YV0|GES_ARATH (e_value=3e-127) (E,E)-geranyllinalool synthase OS=Arabidopsis thaliana GN=GES PE=2 SV=1;; (*TAIR) AT1G61120.1 (e_value=2e-128) | Symbols: TPS04, GES, TPS4 | terpene synthase 04 | chr1:22523689-22528598 FORWARD LENGTH=877;; (*ITAG) Solyc03g006550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1120039-1127165 transcript_region:SL2.40ch03:1120039..1127165+ go_terms:GO:0016829,GO:0008152 functional_description:"(-)-ent-kaurene synthase (AHRD V1 ***- D2X8G1_PICGL); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00019611g0001.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|6|0|532; (*ITAG) Solyc07g041360.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49857890-49858318 transcript_region:SL2.40ch07:49857890..49858318- functional_description:"Unknown Protein (AHRD V1)"; NbS00019611g0019.1 protein AED:0.18 eAED:0.33 QI:0|0|0|1|0|0|6|0|633; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=1e-25) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT1G11090.1 (e_value=2e-150) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3702655-3703629 FORWARD LENGTH=324;; (*ITAG) Solyc03g006560.2.1 (e_value=4e-169) genomic_reference:SL2.40ch03 gene_region:1128702-1130011 transcript_region:SL2.40ch03:1128702..1130011+ go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00033213g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|186; (*SWP) sp|O49686|PYR1_ARATH (e_value=7e-69) Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1;; (*TAIR) AT4G17870.1 (e_value=6e-70) | Symbols: PYR1, RCAR11 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:9928792-9929367 FORWARD LENGTH=191;; (*ITAG) Solyc08g076960.1.1 (e_value=3e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:58068066-58068761 transcript_region:SL2.40ch08:58068066..58068761- go_terms:GO:0042803 functional_description:"Abscisic acid receptor PYR1 (AHRD V1 **-- PYR1_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0042803 NbS00015065g0005.1 protein AED:0.09 eAED:0.09 QI:312|0.75|0.8|1|1|1|5|301|158; (*SWP) sp|Q9FPR6|ARR17_ARATH (e_value=3e-64) Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1;; (*TAIR) AT3G56380.1 (e_value=2e-65) | Symbols: ARR17, RR17 | response regulator 17 | chr3:20905480-20906368 FORWARD LENGTH=153;; (*ITAG) Solyc06g048930.2.1 (e_value=9e-90) genomic_reference:SL2.40ch06 gene_region:28460694-28463016 transcript_region:SL2.40ch06:28460694..28463016- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00051180g0005.1 protein AED:0.26 eAED:0.26 QI:576|1|1|1|0.4|0.45|11|453|308; (*TAIR) AT1G60670.2 (e_value=3e-64) | Symbols: | Protein of unknown function (DUF3755) | chr1:22344099-22347140 FORWARD LENGTH=254;; (*ITAG) Solyc01g011350.2.1 (e_value=6e-145) genomic_reference:SL2.40ch01 gene_region:8685285-8695311 transcript_region:SL2.40ch01:8685285..8695311- functional_description:"cDNA clone J013057D02 full insert sequence (AHRD V1 **-- B7EBX1_ORYSJ)"; NbS00051180g0008.1 protein AED:0.22 eAED:0.28 QI:0|0.66|0.71|1|0.66|0.71|7|578|315; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1;; (*TAIR) AT1G10430.1 (e_value=0.0) | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00040502g0006.1 protein AED:0.09 eAED:0.09 QI:493|1|1|1|1|1|10|315|1356; (*SWP) sp|Q7G9P4|ALDO3_ARATH (e_value=0.0) Abscisic-aldehyde oxidase OS=Arabidopsis thaliana GN=AAO3 PE=1 SV=1;; (*TAIR) AT2G27150.2 (e_value=0.0) | Symbols: AAO3, At-AO3, AOdelta, AtAAO3 | abscisic aldehyde oxidase 3 | chr2:11601952-11607014 FORWARD LENGTH=1332;; (*ITAG) Solyc11g071600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52100342-52106920 transcript_region:SL2.40ch11:52100342..52106920+ go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Aldehyde oxidase (AHRD V1 ***- Q9FV23_SOLLC); contains Interpro domain(s) IPR002346 Molybdopterin dehydrogenase, FAD-binding "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00040502g0007.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|1|1|2|0|120; (*SWP) sp|Q9M8Y4|ARR22_ARATH (e_value=4e-15) Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1;; (*TAIR) AT3G04280.3 (e_value=3e-16) | Symbols: ARR22, RR22 | response regulator 22 | chr3:1130138-1130689 REVERSE LENGTH=142;; (*ITAG) Solyc11g071630.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52133392-52134005 transcript_region:SL2.40ch11:52133392..52134005- go_terms:GO:0006355 functional_description:"Sensor histidine kinase LuxQ (AHRD V1 ***- D2YSE6_VIBMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00048465g0003.1 protein AED:0.40 eAED:0.40 QI:143|1|1|1|0.5|0.33|3|236|131; (*SWP) sp|O49453|Y4844_ARATH (e_value=3e-52) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT1G23750.1 (e_value=4e-64) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:8400638-8401171 FORWARD LENGTH=137;; (*ITAG) Solyc05g005510.2.1 (e_value=7e-65) genomic_reference:SL2.40ch05 gene_region:368271-370985 transcript_region:SL2.40ch05:368271..370985+ functional_description:"DNA-binding related protein (Fragment) (AHRD V1 ***- A9XNX9_9MYRT); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00026210g0015.1 protein AED:0.16 eAED:0.16 QI:354|1|1|1|0.66|0.5|4|658|257; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=1e-68) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G47740.2 (e_value=2e-130) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:17567903-17569035 FORWARD LENGTH=279;; (*ITAG) Solyc12g089060.1.1 (e_value=1e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62640294-62642250 transcript_region:SL2.40ch12:62640294..62642250- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00026210g0014.1 protein AED:0.24 eAED:0.24 QI:737|0.8|0.83|1|0.6|0.5|6|511|198; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=2e-117) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=1e-118) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g089090.1.1 (e_value=9e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62655918-62659826 transcript_region:SL2.40ch12:62655918..62659826- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00026210g0021.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0|1|0.5|0.33|3|0|361; (*SWP) sp|Q8S307|BZR1_ARATH (e_value=6e-85) Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1;; (*TAIR) AT1G75080.2 (e_value=5e-86) | Symbols: BZR1 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:28185709-28187063 FORWARD LENGTH=336;; (*ITAG) Solyc12g089040.1.1 (e_value=4e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62634158-62636323 transcript_region:SL2.40ch12:62634158..62636323+ go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00026210g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|91; (*TAIR) AT1G35580.3 (e_value=5e-22) | Symbols: CINV1 | cytosolic invertase 1 | chr1:13123183-13124808 REVERSE LENGTH=460;; (*ITAG) Solyc00g021660.1.1 (e_value=3e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00026210g0019.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|117; (*SWP) sp|P12216|CCSA_TOBAC (e_value=2e-42) Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1;; (*ITAG) ATCG01040.1 (e_value=2e-24) | Symbols: YCF5 | Cytochrome C assembly protein | chrC:114461-115447 FORWARD LENGTH=328;; (*ITAG) Solyc11g021210.1.1 (e_value=4e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13387102-13388041 transcript_region:SL2.40ch11:13387102..13388041+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis protein ccsA (AHRD V1 ***- CCSA_SOLLC); contains Interpro domain(s) IPR017562 Cytochrome c-type biogenesis protein CcsA "; GO:0016020 NbS00026210g0020.1 protein AED:0.37 eAED:0.58 QI:0|0|0|1|0|0|2|0|89 NbS00028351g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.2|1|1|1|5|0|472; (*SWP) sp|Q8VZK9|CSLE1_ARATH (e_value=9e-159) Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1;; (*TAIR) AT1G55850.1 (e_value=7e-160) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc07g065660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64569421-64573269 transcript_region:SL2.40ch07:64569421..64573269- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT17_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00028351g0014.1 protein AED:0.29 eAED:0.29 QI:141|1|0.8|1|0.75|0.6|5|0|212; (*SWP) sp|A7SXK3|TMED_NEMVE (e_value=1e-17) Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1;; (*TAIR) AT3G07680.1 (e_value=9e-108) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g015740.1.1 (e_value=2e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5718806-5721319 transcript_region:SL2.40ch12:5718806..5721319- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00028351g0021.1 protein AED:0.24 eAED:0.25 QI:0|0.53|0.37|1|0.86|0.87|16|423|2126; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc07g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00028351g0012.1 protein AED:0.29 eAED:0.30 QI:285|0.4|0.33|1|1|1|6|0|1688; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.2 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20892910 REVERSE LENGTH=3681;; (*ITAG) Solyc07g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00028351g0020.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|4|0|119; (*TAIR) AT5G55850.1 (e_value=4e-27) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604951 FORWARD LENGTH=114;; (*ITAG) Solyc07g065640.2.1 (e_value=5e-36) genomic_reference:SL2.40ch07 gene_region:64560188-64564962 transcript_region:SL2.40ch07:64560188..64564962+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 *-*- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbC24587574g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|120; (*SWP) sp|Q9LNC0|PPR16_ARATH (e_value=3e-40) Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1;; (*TAIR) AT1G06270.1 (e_value=2e-41) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:1918242-1919273 REVERSE LENGTH=343;; (*ITAG) Solyc01g088490.2.1 (e_value=6e-68) genomic_reference:SL2.40ch01 gene_region:75036569-75037672 transcript_region:SL2.40ch01:75036569..75037672- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KG17_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000906g0006.1 protein AED:0.09 eAED:0.11 QI:341|0.62|0.88|1|0.37|0.33|9|482|283; (*TAIR) AT2G02960.3 (e_value=8e-51) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271;; (*ITAG) Solyc05g007660.2.1 (e_value=4e-97) genomic_reference:SL2.40ch05 gene_region:2160742-2164468 transcript_region:SL2.40ch05:2160742..2164468- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00000906g0003.1 protein AED:0.15 eAED:0.28 QI:0|0|0|1|1|1|2|0|83; (*ITAG) Solyc05g007650.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2156116-2156367 transcript_region:SL2.40ch05:2156116..2156367- functional_description:"Unknown Protein (AHRD V1)"; NbS00021492g0001.1 protein AED:0.22 eAED:0.25 QI:0|0.70|0.72|0.94|0.94|0.88|18|255|639; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=0.0) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.1 (e_value=0.0) | Symbols: ADL1, ADL1A, AG68, DRP1A, RSW9, DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=610;; (*ITAG) Solyc01g095970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00037253g0010.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|1|2|0|326; (*ITAG) Solyc02g030330.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00037253g0011.1 protein AED:0.35 eAED:0.35 QI:394|0.27|0.33|0.83|0.18|0.25|12|595|602; (*SWP) sp|Q94BU1|Y1181_ARATH (e_value=1e-41) Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1;; (*TAIR) AT5G24970.1 (e_value=1e-118) | Symbols: | Protein kinase superfamily protein | chr5:8604358-8608663 REVERSE LENGTH=719;; (*ITAG) Solyc08g068920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55197139-55214508 transcript_region:SL2.40ch08:55197139..55214508- functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00025740g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|216; (*SWP) sp|Q40193|RB11C_LOTJA (e_value=4e-143) Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1;; (*TAIR) AT1G07410.1 (e_value=7e-140) | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | RAB GTPase homolog A2B | chr1:2276270-2277154 FORWARD LENGTH=214;; (*ITAG) Solyc06g005810.2.1 (e_value=1e-143) genomic_reference:SL2.40ch06 gene_region:839934-842843 transcript_region:SL2.40ch06:839934..842843- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00007976g0007.1 protein AED:0.39 eAED:0.58 QI:0|0|0|1|1|1|2|0|190 NbS00007976g0008.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.75|0|0.25|4|0|437; (*SWP) sp|Q9M9Q6|SCP50_ARATH (e_value=3e-115) Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1;; (*TAIR) AT1G15000.1 (e_value=2e-116) | Symbols: scpl50 | serine carboxypeptidase-like 50 | chr1:5168613-5169947 FORWARD LENGTH=444;; (*ITAG) Solyc09g007640.2.1 (e_value=9e-178) genomic_reference:SL2.40ch09 gene_region:1208268-1210947 transcript_region:SL2.40ch09:1208268..1210947+ go_terms:GO:0042802 functional_description:"Serine carboxypeptidase (AHRD V1 ***- A8HP98_CHLRE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802 NbS00026367g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|219|228; (*SWP) sp|Q8LDV3|Y4320_ARATH (e_value=4e-27) Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=1 SV=2;; (*TAIR) AT4G13200.1 (e_value=3e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:7668292-7669166 REVERSE LENGTH=185;; (*ITAG) Solyc09g061440.2.1 (e_value=5e-46) genomic_reference:SL2.40ch09 gene_region:54714646-54719199 transcript_region:SL2.40ch09:54714646..54719199- functional_description:"Os04g0513000 protein (Fragment) (AHRD V1 *-*- Q0JBS2_ORYSJ)"; NbS00026367g0007.1 protein AED:0.20 eAED:0.20 QI:135|1|1|1|1|1|9|141|610; (*SWP) sp|Q54KS4|GNL3_DICDI (e_value=5e-103) Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1;; (*TAIR) AT3G07050.1 (e_value=0.0) | Symbols: | GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582;; (*ITAG) Solyc09g061430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54707523-54714483 transcript_region:SL2.40ch09:54707523..54714483+ go_terms:GO:0005515,GO:0005525 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 *-** B0WF29_CULQU); contains Interpro domain(s) IPR014813 GNL3L/Grn1 putative GTPase "; GO:0005515,GO:0005525 NbS00017776g0004.1 protein AED:0.30 eAED:0.30 QI:0|0.85|0.75|1|0.85|0.87|8|0|300; (*SWP) sp|Q5ZM25|OLA1_CHICK (e_value=1e-109) Obg-like ATPase 1 OS=Gallus gallus GN=OLA1 PE=2 SV=1;; (*TAIR) AT1G30580.1 (e_value=3e-171) | Symbols: | GTP binding | chr1:10831953-10835454 REVERSE LENGTH=394;; (*ITAG) Solyc02g023970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15314779-15327219 transcript_region:SL2.40ch02:15314779..15327219- go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** Q9M7P3_CAPAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00023900g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.75|1|1|1|8|178|567; (*SWP) sp|O94514|NOP56_SCHPO (e_value=0.0) Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=2 SV=1;; (*TAIR) AT1G56110.1 (e_value=0.0) | Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522;; (*ITAG) Solyc01g100570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbS00023900g0002.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.25|0.75|1|1|4|170|626; (*TAIR) AT5G36930.2 (e_value=1e-14) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc01g113620.1.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82315767-82320596 transcript_region:SL2.40ch01:82315767..82320596+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"NBS-LRR resistance protein (Fragment) (AHRD V1 *-*- C1K2I0_ROSHC); contains Interpro domain(s) IPR002182 NB-ARC "; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00016469g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|63; (*SWP) sp|Q9C5R8|BAS1B_ARATH (e_value=7e-28) 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3;; (*TAIR) AT5G06290.1 (e_value=5e-29) | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin B | chr5:1919380-1921211 FORWARD LENGTH=273;; (*ITAG) Solyc01g007740.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:1903993-1908309 transcript_region:SL2.40ch01:1903993..1908309- go_terms:GO:0016491,GO:0045454,GO:0051920 functional_description:"Peroxiredoxin (AHRD V1 **-- Q9FE12_PHAVU); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454,GO:0051920 NbS00015719g0008.1 protein AED:0.25 eAED:0.25 QI:69|0.90|1|1|0.81|0.83|12|412|332; (*ITAG) Solyc04g071470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56042136-56050296 transcript_region:SL2.40ch04:56042136..56050296+ functional_description:"Chromosome 15 contig 1 DNA sequence (AHRD V1 ***- Q00V16_OSTTA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00028430g0007.1 protein AED:0.23 eAED:0.24 QI:228|0.75|0.53|1|0.66|0.76|13|0|1912; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=2e-78) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=6e-51) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00028430g0009.1 protein AED:0.40 eAED:0.42 QI:0|0|0|1|0|0|6|0|769; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=2e-17) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT1G58807.2 (e_value=6e-15) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21780574-21783395 FORWARD LENGTH=855;; (*ITAG) Solyc06g008450.2.1 (e_value=7e-144) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00013780g0007.1 protein AED:0.07 eAED:0.07 QI:75|1|0.33|1|1|1|3|0|358; (*SWP) sp|P12437|PERX_SOLTU (e_value=2e-170) Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT5G05340.1 (e_value=6e-71) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc02g079500.2.1 (e_value=2e-167) genomic_reference:SL2.40ch02 gene_region:38618009-38620468 transcript_region:SL2.40ch02:38618009..38620468- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q50LG4_TOBAC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00013780g0006.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|406; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-89) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=5e-146) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g079440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38580436-38582052 transcript_region:SL2.40ch02:38580436..38582052- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00031941g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|59|154; (*SWP) sp|P31674|RS15_ORYSJ (e_value=3e-87) 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2;; (*TAIR) AT5G09500.1 (e_value=5e-84) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc02g082000.2.1 (e_value=4e-88) genomic_reference:SL2.40ch02 gene_region:40322179-40324715 transcript_region:SL2.40ch02:40322179..40324715- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_BRAHW); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00031941g0018.1 protein AED:0.19 eAED:0.19 QI:180|1|1|1|0.66|0.5|4|237|123; (*SWP) sp|Q9STY6|RS202_ARATH (e_value=2e-77) 40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1;; (*TAIR) AT3G47370.3 (e_value=2e-78) | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:17453671-17454437 REVERSE LENGTH=122;; (*ITAG) Solyc01g096590.2.1 (e_value=1e-79) genomic_reference:SL2.40ch01 gene_region:79418198-79420477 transcript_region:SL2.40ch01:79418198..79420477- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10 (AHRD V1 ***- RS10_CAMFF); contains Interpro domain(s) IPR005729 Ribosomal protein S10, eukaryotic/archaeal "; GO:0005840,GO:0015935 NbS00031941g0020.1 protein AED:0.11 eAED:0.11 QI:17|0.9|0.72|1|0.9|0.81|11|0|776; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-136) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc01g096560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79398896-79403053 transcript_region:SL2.40ch01:79398896..79403053+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00031941g0023.1 protein AED:0.17 eAED:0.17 QI:97|0.8|0.83|1|0.4|0.33|6|282|440; (*SWP) sp|A8K979|ERI2_HUMAN (e_value=4e-41) ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2;; (*TAIR) AT3G15140.1 (e_value=3e-17) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5099712-5101717 REVERSE LENGTH=337;; (*ITAG) Solyc01g096570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79404952-79411886 transcript_region:SL2.40ch01:79404952..79411886+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease family protein expressed (AHRD V1 **-- Q2R3D7_ORYSJ); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00031941g0021.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.42|1|0.5|0.28|7|0|572; (*SWP) sp|Q0WVD6|ANM3_ARATH (e_value=2e-148) Probable protein arginine N-methyltransferase 3 OS=Arabidopsis thaliana GN=PRMT3 PE=2 SV=1;; (*TAIR) AT3G12270.1 (e_value=1e-149) | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601;; (*ITAG) Solyc01g096550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79391836-79397141 transcript_region:SL2.40ch01:79391836..79397141+ go_terms:GO:0035242 functional_description:"Protein arginine methyltransferase (AHRD V1 *-** C1E5H4_9CHLO); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00010385g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.81|0.76|1|0.81|0.76|17|313|978; (*SWP) sp|Q9CZU3|SK2L2_MOUSE (e_value=0.0) Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1;; (*TAIR) AT2G06990.1 (e_value=0.0) | Symbols: HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr2:2895135-2900909 FORWARD LENGTH=995;; (*ITAG) Solyc12g017860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7587367-7602793 transcript_region:SL2.40ch12:7587367..7602793- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00010385g0013.1 protein AED:0.22 eAED:0.22 QI:241|1|0.5|1|0|0|2|0|216; (*TAIR) AT5G20700.1 (e_value=6e-21) | Symbols: | Protein of unknown function (DUF581) | chr5:7006178-7007003 REVERSE LENGTH=248;; (*ITAG) Solyc07g017220.2.1 (e_value=2e-76) genomic_reference:SL2.40ch07 gene_region:6515317-6518394 transcript_region:SL2.40ch07:6515317..6518394- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00024177g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|312; (*ITAG) Solyc01g087980.2.1 (e_value=8e-111) genomic_reference:SL2.40ch01 gene_region:74589488-74590737 transcript_region:SL2.40ch01:74589488..74590737+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024177g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.57|0.5|0.87|0.57|0.62|8|0|315; (*SWP) sp|Q39295|AGL15_BRANA (e_value=6e-45) Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1;; (*TAIR) AT5G13790.1 (e_value=2e-45) | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449128-4450802 REVERSE LENGTH=268;; (*ITAG) Solyc01g087990.2.1 (e_value=4e-95) genomic_reference:SL2.40ch01 gene_region:74590648-74596854 transcript_region:SL2.40ch01:74590648..74596854- go_terms:GO:0005515 functional_description:"MADS-box transcription factor 3 (AHRD V1 ***- D3U2H2_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515 NbS00037043g0017.1 protein AED:0.00 eAED:0.00 QI:4|1|0.83|1|1|1|6|341|878; (*SWP) sp|Q6NPP4|CMTA2_ARATH (e_value=4e-136) Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1;; (*TAIR) AT5G64220.2 (e_value=3e-137) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr5:25686434-25691903 FORWARD LENGTH=1050;; (*ITAG) Solyc01g057270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:53184636-53195279 transcript_region:SL2.40ch01:53184636..53195279+ go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 1 (AHRD V1 **** Q0WQF9_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00037043g0006.1 protein AED:0.27 eAED:0.27 QI:23|0.5|0.33|0.66|1|1|3|0|82; (*SWP) sp|Q6NPP4|CMTA2_ARATH (e_value=3e-40) Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1;; (*TAIR) AT5G64220.2 (e_value=2e-41) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr5:25686434-25691903 FORWARD LENGTH=1050;; (*ITAG) Solyc04g056270.2.1 (e_value=8e-42) genomic_reference:SL2.40ch04 gene_region:53071198-53081628 transcript_region:SL2.40ch04:53071198..53081628- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 3 (AHRD V1 *--* Q0WW70_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00037043g0019.1 protein AED:0.14 eAED:0.14 QI:200|1|1|1|1|1|5|119|308; (*SWP) sp|Q0VMF9|RS6_ALCBS (e_value=4e-22) 30S ribosomal protein S6 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsF PE=3 SV=1;; (*TAIR) AT3G17170.1 (e_value=5e-94) | Symbols: RFC3 | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:5853186-5854853 REVERSE LENGTH=314;; (*ITAG) Solyc01g058190.2.1 (e_value=6e-118) genomic_reference:SL2.40ch01 gene_region:58437988-58440724 transcript_region:SL2.40ch01:58437988..58440724+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- B4WXW0_9GAMM); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00037043g0018.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.33|0|0|3|0|85 NbS00011083g0009.1 protein AED:0.06 eAED:0.06 QI:85|0.75|0.8|1|0.75|0.8|5|198|635; (*SWP) sp|Q9C6W5|AB14G_ARATH (e_value=0.0) ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1;; (*TAIR) AT1G31770.1 (e_value=0.0) | Symbols: ABCG14 | ATP-binding cassette 14 | chr1:11375252-11377644 REVERSE LENGTH=648;; (*ITAG) Solyc08g075430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56730208-56733305 transcript_region:SL2.40ch08:56730208..56733305- go_terms:GO:0008559 functional_description:"ABC transporter G family member 14 (AHRD V1 ***- AB14G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00024457g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|274; (*SWP) sp|O80360|RK3_TOBAC (e_value=3e-156) 50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=2 SV=1;; (*TAIR) AT2G43030.1 (e_value=8e-118) | Symbols: | Ribosomal protein L3 family protein | chr2:17894898-17895713 FORWARD LENGTH=271;; (*ITAG) Solyc06g051200.2.1 (e_value=4e-147) genomic_reference:SL2.40ch06 gene_region:30883415-30885789 transcript_region:SL2.40ch06:30883415..30885789+ go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3 (AHRD V1 ***- D7LJX0_ARALY); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00011484g0005.1 protein AED:0.27 eAED:0.27 QI:387|1|1|1|0.62|0.66|9|411|375; (*SWP) sp|O94673|YG75_SCHPO (e_value=7e-33) Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC776.05 PE=2 SV=1;; (*TAIR) AT5G35460.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13672598-13674546 FORWARD LENGTH=381;; (*ITAG) Solyc07g041160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49272644-49276387 transcript_region:SL2.40ch07:49272644..49276387- functional_description:"Uncharacterized membrane protein C776.05 (AHRD V1 **-- YG75_SCHPO)"; NbS00028447g0102.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|259 NbS00022193g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0|1|0|0|4|0|280; (*SWP) sp|Q8LNZ5|XTHB_PHAAN (e_value=8e-152) Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1;; (*TAIR) AT5G13870.1 (e_value=4e-148) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc11g040140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28603625-28606490 transcript_region:SL2.40ch11:28603625..28606490+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 ***- C0IRG4_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00022193g0009.1 protein AED:0.27 eAED:0.36 QI:0|0|0.5|1|0|0.5|2|433|194; (*TAIR) AT1G44960.1 (e_value=4e-50) | Symbols: | SNARE associated Golgi protein family | chr1:16999576-17001447 FORWARD LENGTH=261;; (*ITAG) Solyc11g040130.1.1 (e_value=6e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28592236-28598845 transcript_region:SL2.40ch11:28592236..28598845+ functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B9XJU7_9BACT); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00022193g0011.1 protein AED:0.16 eAED:0.16 QI:486|1|1|1|0.76|0.64|14|542|496; (*SWP) sp|Q68CP4|HGNAT_HUMAN (e_value=7e-28) Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=2e-180) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc11g040150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28610740-28616082 transcript_region:SL2.40ch11:28610740..28616082- functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- D2QUR2_SPILD); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbC26334013g0004.1 protein AED:0.02 eAED:0.02 QI:630|1|0.5|1|0|0.5|2|0|240; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=5e-44) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=4e-45) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc03g114850.2.1 (e_value=5e-115) genomic_reference:SL2.40ch03 gene_region:58796755-58802237 transcript_region:SL2.40ch03:58796755..58802237+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00051891g0001.1 protein AED:0.10 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|815; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=1e-12) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G27860.1 (e_value=4e-64) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:10326128-10328086 FORWARD LENGTH=652;; (*ITAG) Solyc02g086750.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00051891g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|211; (*TAIR) AT3G01516.1 (e_value=1e-11) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14690.1); Has 67 Blast hits to 67 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:207426-207989 FORWARD LENGTH=187;; (*ITAG) Solyc02g086760.1.1 (e_value=9e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43949745-43950413 transcript_region:SL2.40ch02:43949745..43950413- functional_description:"Unknown Protein (AHRD V1)"; NbS00015329g0001.1 protein AED:0.21 eAED:0.21 QI:1642|0.93|0.94|1|0.37|0.58|17|296|395; (*SWP) sp|B9DFX7|HMA8_ARATH (e_value=0.0) Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 PE=2 SV=1;; (*TAIR) AT5G21930.3 (e_value=0.0) | Symbols: PAA2 | P-type ATPase of Arabidopsis 2 | chr5:7243129-7248721 FORWARD LENGTH=860;; (*ITAG) Solyc08g061610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:46389278-46410833 transcript_region:SL2.40ch08:46389278..46410833- go_terms:GO:0004008 functional_description:"Copper-exporting P-type ATPase A (AHRD V1 **** COPA_STAES); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00052944g0006.1 protein AED:0.04 eAED:0.04 QI:222|0.75|0.66|1|0.75|0.77|9|0|727; (*SWP) sp|Q02028|HSP7S_PEA (e_value=0.0) Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1;; (*TAIR) AT4G24280.1 (e_value=0.0) | Symbols: cpHsc70-1 | chloroplast heat shock protein 70-1 | chr4:12590094-12593437 FORWARD LENGTH=718;; (*ITAG) Solyc01g103450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83821528-83826037 transcript_region:SL2.40ch01:83821528..83826037+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- Q1SKX2_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00052944g0007.1 protein AED:0.29 eAED:0.61 QI:197|0|0.33|1|0|0.33|3|0|215; (*ITAG) Solyc07g006760.2.1 (e_value=1e-12) genomic_reference:SL2.40ch07 gene_region:1599263-1605156 transcript_region:SL2.40ch07:1599263..1605156- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0004712 NbS00036301g0004.1 protein AED:0.24 eAED:0.24 QI:497|0.5|0.33|1|0.5|0.33|3|0|155; (*SWP) sp|Q1RHN1|RL14_RICBR (e_value=2e-37) 50S ribosomal protein L14 OS=Rickettsia bellii (strain RML369-C) GN=rplN PE=3 SV=1;; (*TAIR) AT5G46160.1 (e_value=2e-53) | Symbols: | Ribosomal protein L14p/L23e family protein | chr5:18711456-18712341 REVERSE LENGTH=173;; (*ITAG) Solyc03g119380.1.1 (e_value=1e-67) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:62059382-62059735 transcript_region:SL2.40ch03:62059382..62059735- go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- B6U1B6_MAIZE); contains Interpro domain(s) IPR005745 Ribosomal protein L14, bacterial-type "; GO:0003735,GO:0005515 NbS00042031g0006.1 protein AED:0.22 eAED:0.24 QI:0|0.2|0|1|0.4|0.66|6|0|237; (*SWP) sp|Q43468|STIP_SOYBN (e_value=1e-68) Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1;; (*TAIR) AT4G12400.1 (e_value=3e-68) | Symbols: Hop3 | stress-inducible protein, putative | chr4:7339024-7341239 REVERSE LENGTH=530;; (*ITAG) Solyc08g079170.2.1 (e_value=4e-62) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbS00042031g0002.1 protein AED:0.36 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|114; (*SWP) sp|Q9USI5|STI1_SCHPO (e_value=1e-12) Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sti1 PE=2 SV=1;; (*TAIR) AT1G12270.1 (e_value=3e-33) | Symbols: Hop1 | stress-inducible protein, putative | chr1:4172105-4174575 FORWARD LENGTH=572;; (*ITAG) Solyc08g079170.2.1 (e_value=4e-47) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbS00044794g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|317|267; (*TAIR) AT1G80130.1 (e_value=3e-43) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30141250-30142478 REVERSE LENGTH=305;; (*ITAG) Solyc03g116670.2.1 (e_value=4e-51) genomic_reference:SL2.40ch03 gene_region:60036546-60038822 transcript_region:SL2.40ch03:60036546..60038822+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00015062g0005.1 protein AED:0.07 eAED:0.07 QI:392|1|0.5|1|1|1|2|0|186; (*SWP) sp|O80992|PYL2_ARATH (e_value=3e-84) Abscisic acid receptor PYL2 OS=Arabidopsis thaliana GN=PYL2 PE=1 SV=1;; (*TAIR) AT2G26040.1 (e_value=2e-85) | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:11094832-11095404 REVERSE LENGTH=190;; (*ITAG) Solyc12g095970.1.1 (e_value=3e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63409947-63411151 transcript_region:SL2.40ch12:63409947..63411151- go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL2 (AHRD V1 **-* PYL2_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00043132g0012.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|0.5|0.33|3|0|841; (*SWP) sp|Q8VZE4|PP299_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1;; (*TAIR) AT4G01570.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:679487-681904 FORWARD LENGTH=805;; (*ITAG) Solyc11g008760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2934597-2937056 transcript_region:SL2.40ch11:2934597..2937056- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4T9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00043132g0005.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|138; (*ITAG) Solyc11g008750.1.1 (e_value=4e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2931453-2932136 transcript_region:SL2.40ch11:2931453..2932136+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043132g0003.1 protein AED:0.38 eAED:0.38 QI:99|1|0.66|1|0|0|3|89|102; (*TAIR) AT5G44710.1 (e_value=3e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18041621-18042322 FORWARD LENGTH=102;; (*ITAG) Solyc07g056070.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61285893-61286201 transcript_region:SL2.40ch07:61285893..61286201+ functional_description:"Genomic DNA chromosome 5 TAC clone K23L20 (AHRD V1 ***- Q9FIZ2_ARATH); contains Interpro domain(s) IPR013219 Ribosomal protein S27/S33, mitochondrial "; NbC25865732g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|477 NbS00002967g0004.1 protein AED:0.37 eAED:0.39 QI:0|0.4|0.33|1|0.8|0.83|6|310|314; (*TAIR) AT1G73760.1 (e_value=1e-39) | Symbols: | RING/U-box superfamily protein | chr1:27739366-27741161 REVERSE LENGTH=367;; (*ITAG) Solyc03g118840.2.1 (e_value=1e-91) genomic_reference:SL2.40ch03 gene_region:61692728-61696244 transcript_region:SL2.40ch03:61692728..61696244+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00034419g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|292; (*SWP) sp|Q40478|ERF5_TOBAC (e_value=4e-164) Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=8e-57) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093550.1.1 (e_value=2e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48374208-48374933 transcript_region:SL2.40ch03:48374208..48374933- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00014005g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|85|77 NbS00012300g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.53|1|0.58|0.53|13|0|803; (*TAIR) AT5G54440.1 (e_value=0.0) | Symbols: CLUB, AtTRS130 | CLUB | chr5:22100056-22107695 FORWARD LENGTH=1259;; (*ITAG) Solyc07g063440.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63138711-63153358 transcript_region:SL2.40ch07:63138711..63153358+ functional_description:"Trafficking protein particle complex subunit 10 (AHRD V1 *--- D3BI54_POLPA)"; NbS00012300g0006.1 protein AED:0.45 eAED:0.46 QI:0|0.75|0.6|1|0.75|1|5|0|200; (*SWP) sp|Q556Z3|TPC10_DICDI (e_value=4e-26) Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1;; (*TAIR) AT5G54440.1 (e_value=3e-105) | Symbols: CLUB, AtTRS130 | CLUB | chr5:22100056-22107695 FORWARD LENGTH=1259;; (*ITAG) Solyc07g063440.2.1 (e_value=7e-123) genomic_reference:SL2.40ch07 gene_region:63138711-63153358 transcript_region:SL2.40ch07:63138711..63153358+ functional_description:"Trafficking protein particle complex subunit 10 (AHRD V1 *--- D3BI54_POLPA)"; NbS00045701g0004.1 protein AED:0.16 eAED:0.16 QI:306|0.9|0.81|1|0.8|0.63|11|0|842; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-95) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G30020.1 (e_value=0.0) | Symbols: | PA-domain containing subtilase family protein | chr4:14678251-14681762 FORWARD LENGTH=816;; (*ITAG) Solyc07g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3887662-3898941 transcript_region:SL2.40ch07:3887662..3898941+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00015368g0007.1 protein AED:0.16 eAED:0.16 QI:213|0.86|0.87|1|0.69|0.66|24|440|815; (*SWP) sp|Q38861|XPB1_ARATH (e_value=0.0) DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3;; (*TAIR) AT5G41370.1 (e_value=0.0) | Symbols: XPB1, ATXPB1 | homolog of xeroderma pigmentosum complementation group B 1 | chr5:16551337-16555792 FORWARD LENGTH=767;; (*ITAG) Solyc08g081340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61564279-61573863 transcript_region:SL2.40ch08:61564279..61573863+ go_terms:GO:0043140 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** C8NNJ3_COREF); contains Interpro domain(s) IPR001161 Xeroderma pigmentosum group B protein (XP-B) "; GO:0043140 NbS00015368g0010.1 protein AED:0.31 eAED:0.31 QI:9|1|0.66|1|0.6|0.66|6|0|314; (*SWP) sp|Q54C25|GPN1_DICDI (e_value=2e-119) GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1;; (*TAIR) AT4G21800.2 (e_value=2e-166) | Symbols: QQT2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:11573289-11574976 FORWARD LENGTH=379;; (*ITAG) Solyc08g081330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61560558-61563359 transcript_region:SL2.40ch08:61560558..61563359+ go_terms:GO:0005515 functional_description:"GPN-loop GTPase 1 (AHRD V1 **-- Q4VAB2_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515 NbS00004027g0004.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.66|0.5|0.33|3|0|442; (*TAIR) AT4G15240.1 (e_value=3e-119) | Symbols: | Protein of unknown function (DUF604) | chr4:8703518-8705378 REVERSE LENGTH=488;; (*ITAG) Solyc07g052630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58420121-58424359 transcript_region:SL2.40ch07:58420121..58424359+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00048058g0003.1 protein AED:0.22 eAED:0.22 QI:245|1|0.90|1|0.9|0.90|11|0|474; (*SWP) sp|Q9FL69|AGD5_ARATH (e_value=5e-150) Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1;; (*TAIR) AT5G54310.1 (e_value=4e-151) | Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483;; (*ITAG) Solyc07g063550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63221555-63228516 transcript_region:SL2.40ch07:63221555..63228516+ go_terms:GO:0003677 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0003677 NbS00034575g0002.1 protein AED:0.34 eAED:0.35 QI:0|0.66|0.5|1|1|1|4|0|197; (*SWP) sp|Q9SAI5|RL71_ARATH (e_value=3e-60) 60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1;; (*TAIR) AT1G80750.1 (e_value=2e-61) | Symbols: | Ribosomal protein L30/L7 family protein | chr1:30349052-30350434 FORWARD LENGTH=247;; (*ITAG) Solyc03g117060.2.1 (e_value=2e-120) genomic_reference:SL2.40ch03 gene_region:60374016-60378796 transcript_region:SL2.40ch03:60374016..60378796- go_terms:GO:0042803 functional_description:"60S ribosomal protein L7-like protein (AHRD V1 ***- B3TM16_ELAGV); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0042803 NbS00034575g0003.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|82 NbS00022094g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.85|0.5|1|0.57|0.75|8|0|270; (*SWP) sp|Q9SU78|MSI5_ARATH (e_value=4e-115) WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2;; (*TAIR) AT4G29730.1 (e_value=3e-116) | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly factor group C5 | chr4:14559255-14562522 REVERSE LENGTH=487;; (*ITAG) Solyc03g121580.2.1 (e_value=5e-147) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00003054g0019.1 protein AED:0.01 eAED:0.01 QI:196|1|1|1|1|1|3|146|177; (*TAIR) AT1G80160.1 (e_value=9e-92) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167;; (*ITAG) Solyc03g116530.2.1 (e_value=7e-112) genomic_reference:SL2.40ch03 gene_region:59966079-59967384 transcript_region:SL2.40ch03:59966079..59967384- go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00003054g0004.1 protein AED:0.03 eAED:0.05 QI:0|1|0.66|1|0|0|3|869|835; (*SWP) sp|Q9SSR4|PPR77_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1;; (*TAIR) AT1G52620.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19603828-19606287 FORWARD LENGTH=819;; (*ITAG) Solyc03g116560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59980181-59982625 transcript_region:SL2.40ch03:59980181..59982625- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJI9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003054g0022.1 protein AED:0.10 eAED:0.10 QI:2337|1|0.85|1|0.83|0.85|7|289|197; (*TAIR) AT5G62200.1 (e_value=2e-53) | Symbols: | Embryo-specific protein 3, (ATS3) | chr5:24984463-24985674 REVERSE LENGTH=190;; (*ITAG) Solyc03g116590.2.1 (e_value=5e-123) genomic_reference:SL2.40ch03 gene_region:59991933-59993885 transcript_region:SL2.40ch03:59991933..59993885- functional_description:"Embryo-specific 3 (AHRD V1 ***- Q2HUA9_MEDTR); contains Interpro domain(s) IPR010417 Embryo-specific 3 "; NbS00003054g0018.1 protein AED:0.24 eAED:0.24 QI:0|0.42|0.37|1|1|1|8|0|381; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=3e-81) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT5G17200.1 (e_value=1e-85) | Symbols: | Pectin lyase-like superfamily protein | chr5:5653524-5655336 REVERSE LENGTH=421;; (*ITAG) Solyc03g116580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59986605-59990295 transcript_region:SL2.40ch03:59986605..59990295- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **** Q9M7D3_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00003054g0003.1 protein AED:0.08 eAED:0.08 QI:116|0.66|1|1|1|1|4|378|151; (*SWP) sp|Q9SSR1|Y1259_ARATH (e_value=9e-59) DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=1 SV=1;; (*TAIR) AT1G52590.1 (e_value=7e-60) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:19589224-19590231 REVERSE LENGTH=172;; (*ITAG) Solyc03g116570.2.1 (e_value=4e-79) genomic_reference:SL2.40ch03 gene_region:59983828-59986133 transcript_region:SL2.40ch03:59983828..59986133+ functional_description:"YuxK (AHRD V1 **-- B4AHQ1_BACPU); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00003054g0021.1 protein AED:0.17 eAED:0.18 QI:0|0.55|0.4|0.9|0.77|0.6|10|0|907; (*SWP) sp|Q9SSR6|PPR78_ARATH (e_value=4e-174) Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1;; (*TAIR) AT1G52630.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:19606470-19608526 REVERSE LENGTH=439;; (*ITAG) Solyc03g116550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59975687-59978494 transcript_region:SL2.40ch03:59975687..59978494+ functional_description:"AT1G52630-like protein (Fragment) (AHRD V1 *-*- D6PNR4_9BRAS); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00026989g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|116; (*ITAG) Solyc07g041740.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00026989g0016.1 protein AED:0.27 eAED:0.28 QI:0|1|0|1|1|1|2|0|236; (*TAIR) AT5G17510.1 (e_value=1e-65) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5770518-5772343 REVERSE LENGTH=369;; (*ITAG) Solyc03g097300.2.1 (e_value=3e-93) genomic_reference:SL2.40ch03 gene_region:53074422-53079125 transcript_region:SL2.40ch03:53074422..53079125- functional_description:"Glutamine-rich protein (AHRD V1 ***- Q9LF51_ARATH)"; NbS00026989g0001.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|83; (*TAIR) AT5G17510.1 (e_value=1e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5770518-5772343 REVERSE LENGTH=369;; (*ITAG) Solyc03g097300.2.1 (e_value=2e-53) genomic_reference:SL2.40ch03 gene_region:53074422-53079125 transcript_region:SL2.40ch03:53074422..53079125- functional_description:"Glutamine-rich protein (AHRD V1 ***- Q9LF51_ARATH)"; NbS00026989g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|1|1|2|0|350; (*SWP) sp|P0C8Z7|GDL91_ARATH (e_value=5e-37) GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1;; (*TAIR) AT1G28640.1 (e_value=2e-38) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10067563-10069109 REVERSE LENGTH=389;; (*ITAG) Solyc01g108640.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00026989g0015.1 protein AED:0.21 eAED:0.21 QI:251|1|1|1|1|1|4|266|249; (*SWP) sp|Q8H0X6|CYT6_ARATH (e_value=2e-88) Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2;; (*TAIR) AT3G12490.2 (e_value=1e-89) | Symbols: ATCYSB, ATCYS6, CYSB | cystatin B | chr3:3960523-3961876 REVERSE LENGTH=234;; (*ITAG) Solyc03g097270.2.1 (e_value=6e-124) genomic_reference:SL2.40ch03 gene_region:53034151-53040369 transcript_region:SL2.40ch03:53034151..53040369+ go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q5Y7Z8_PETHY); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00026989g0014.1 protein AED:0.25 eAED:0.25 QI:0|0.85|0.81|1|0.90|0.86|22|442|891; (*SWP) sp|P36428|SYA_ARATH (e_value=0.0) Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3;; (*TAIR) AT1G50200.1 (e_value=0.0) | Symbols: ALATS, ACD | Alanyl-tRNA synthetase | chr1:18591429-18598311 REVERSE LENGTH=1003;; (*ITAG) Solyc03g097290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53059639-53073900 transcript_region:SL2.40ch03:53059639..53073900+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** C1EDP7_9CHLO); contains Interpro domain(s) IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal "; GO:0000049 NbS00022518g0108.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|374|1022 NbS00022518g0110.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.25|0.66|0.75|4|0|131 NbS00022518g0111.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.5|0|0|2|0|78 NbS00011959g0012.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|561; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=7e-127) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G40850.1 (e_value=7e-164) | Symbols: ATPI4K GAMMA 1, PI4K GAMMA 1 | phosphoinositide 4-kinase gamma 1 | chr2:17051575-17053260 FORWARD LENGTH=561;; (*ITAG) Solyc10g078170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59356908-59358608 transcript_region:SL2.40ch10:59356908..59358608- go_terms:GO:0016773 functional_description:"Phosphatidylinositol 3-and 4-kinase family protein (AHRD V1 ***- D7LFV2_ARALY); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0016773 NbS00011959g0015.1 protein AED:0.37 eAED:0.37 QI:94|0.66|0.25|1|1|1|4|0|201; (*SWP) sp|Q9M612|NACA_PINTA (e_value=2e-67) Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G12390.1 (e_value=6e-60) | Symbols: | Nascent polypeptide-associated complex (NAC), alpha subunit family protein | chr3:3942344-3943595 FORWARD LENGTH=203;; (*ITAG) Solyc10g078150.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59347336-59350221 transcript_region:SL2.40ch10:59347336..59350221+ functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6T903_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; NbS00011959g0018.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.71|1|0.66|0.57|7|0|616; (*SWP) sp|Q9FKE6|CCT15_ARATH (e_value=6e-179) Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2;; (*TAIR) AT5G45190.1 (e_value=5e-180) | Symbols: | Cyclin family protein | chr5:18277808-18280733 REVERSE LENGTH=579;; (*ITAG) Solyc10g078180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59362906-59370873 transcript_region:SL2.40ch10:59362906..59370873+ functional_description:"Cyclin family protein (AHRD V1 *-*- D7MKU7_ARALY); contains Interpro domain(s) IPR015429 Transcription regulator cyclin "; NbS00011959g0004.1 protein AED:0.33 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|169; (*TAIR) AT3G56880.1 (e_value=1e-15) | Symbols: | VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245;; (*ITAG) Solyc10g077130.1.1 (e_value=1e-41) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59327643-59328260 transcript_region:SL2.40ch10:59327643..59328260+ functional_description:"Atcambp25-binding protein OF (AHRD V1 ***- D7LGI4_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00031199g0009.1 protein AED:0.10 eAED:0.10 QI:445|0.90|0.91|1|0.36|0.25|12|509|430; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=2e-109) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G37440.1 (e_value=2e-170) | Symbols: | DNAse I-like superfamily protein | chr2:15719230-15721885 FORWARD LENGTH=479;; (*ITAG) Solyc09g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:466754-471839 transcript_region:SL2.40ch09:466754..471839- go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 ***- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00055446g0008.1 protein AED:0.11 eAED:0.18 QI:0|0.44|0.3|1|0.55|0.4|10|0|675; (*SWP) sp|Q8VZK9|CSLE1_ARATH (e_value=0.0) Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1;; (*TAIR) AT1G55850.1 (e_value=0.0) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc07g065660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64569421-64573269 transcript_region:SL2.40ch07:64569421..64573269- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT17_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00055446g0005.1 protein AED:0.35 eAED:0.35 QI:0|1|0.6|1|0.75|0.6|5|0|253; (*SWP) sp|A7SXK3|TMED_NEMVE (e_value=1e-16) Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1;; (*TAIR) AT3G07680.1 (e_value=4e-107) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g015740.1.1 (e_value=4e-136) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5718806-5721319 transcript_region:SL2.40ch12:5718806..5721319- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00024139g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.5|1|0.2|0.33|6|0|403; (*TAIR) AT2G29050.1 (e_value=4e-97) | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12478245-12480121 FORWARD LENGTH=389;; (*ITAG) Solyc06g005580.2.1 (e_value=2e-159) genomic_reference:SL2.40ch06 gene_region:622867-627021 transcript_region:SL2.40ch06:622867..627021- go_terms:GO:0004252 functional_description:"Rhomboid family protein (AHRD V1 ***- D7LUM3_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0004252 NbS00012224g0007.1 protein AED:0.23 eAED:0.23 QI:308|0.83|0.76|1|0.83|0.84|13|173|751; (*SWP) sp|Q3ZDQ4|ATG1_PODAS (e_value=5e-68) Serine/threonine-protein kinase atg1 OS=Podospora anserina GN=ATG1 PE=2 SV=1;; (*TAIR) AT2G37840.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:15851978-15856047 FORWARD LENGTH=733;; (*ITAG) Solyc10g084930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63605944-63612784 transcript_region:SL2.40ch10:63605944..63612784+ go_terms:GO:0032259,GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 *-*- Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0032259,GO:0006468 NbS00027406g0008.1 protein AED:0.19 eAED:0.25 QI:0|0|0|0.6|0.25|0.4|5|0|450; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=5e-61) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=4e-62) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc03g114010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58105201-58106865 transcript_region:SL2.40ch03:58105201..58106865+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00027406g0005.1 protein AED:0.26 eAED:0.26 QI:306|1|1|1|1|1|5|466|190; (*SWP) sp|P29675|SF3_HELAN (e_value=7e-86) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=3e-90) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc03g114000.2.1 (e_value=4e-129) genomic_reference:SL2.40ch03 gene_region:58102456-58104701 transcript_region:SL2.40ch03:58102456..58104701+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00002907g0007.1 protein AED:0.26 eAED:0.26 QI:234|0.8|0.83|1|0.8|0.83|6|362|439; (*SWP) sp|O04373|ILL4_ARATH (e_value=0.0) IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2;; (*TAIR) AT1G51760.1 (e_value=0.0) | Symbols: IAR3, JR3 | peptidase M20/M25/M40 family protein | chr1:19199562-19201424 FORWARD LENGTH=440;; (*ITAG) Solyc12g008690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2064426-2068579 transcript_region:SL2.40ch12:2064426..2068579+ go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 11 (AHRD V1 ***- B9GVN2_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0016787,GO:0008152 NbS00002907g0005.1 protein AED:0.52 eAED:0.55 QI:131|0.25|0.2|0.6|1|1|5|0|121; (*SWP) sp|P49689|RS30_ARATH (e_value=3e-14) 40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3;; (*TAIR) AT5G56670.1 (e_value=2e-15) | Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62;; (*ITAG) Solyc12g008700.1.1 (e_value=8e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:2070165-2071739 transcript_region:SL2.40ch12:2070165..2071739- go_terms:GO:0005840 functional_description:"40S ribosomal protein S30-like (AHRD V1 ***- Q6K853_ORYSJ); contains Interpro domain(s) IPR006846 Ribosomal protein S30 "; GO:0005840 NbS00061984g0002.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|1|1|2|0|115; (*SWP) sp|Q84MA8|AZG2_ARATH (e_value=5e-33) Adenine/guanine permease AZG2 OS=Arabidopsis thaliana GN=AZG2 PE=2 SV=1;; (*TAIR) AT5G50300.1 (e_value=4e-34) | Symbols: AZG2, ATAZG2 | Xanthine/uracil permease family protein | chr5:20466492-20468084 REVERSE LENGTH=530;; (*ITAG) Solyc03g111400.1.1 (e_value=3e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56050645-56052243 transcript_region:SL2.40ch03:56050645..56052243+ go_terms:GO:0005345,GO:0015211 functional_description:"Xanthine/uracil permease family protein (AHRD V1 ***- D7L9S9_ARALY); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0005345,GO:0015211 NbS00002744g0004.1 protein AED:0.22 eAED:0.22 QI:249|0.83|0.76|1|0.91|0.84|13|0|787; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=0.0) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=0.0) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00002744g0010.1 protein AED:0.26 eAED:0.27 QI:3|0.6|0.33|1|0.6|0.83|6|0|455; (*SWP) sp|P53492|ACT7_ARATH (e_value=0.0) Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc03g078400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:44381441-44383329 transcript_region:SL2.40ch03:44381441..44383329+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- Q7XZJ2_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00002744g0014.1 protein AED:0.31 eAED:0.31 QI:421|0.2|0|0.90|0.5|0.54|11|0|698; (*SWP) sp|Q9LXE5|DRM1_ARATH (e_value=5e-138) DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2;; (*TAIR) AT5G15380.1 (e_value=4e-139) | Symbols: DRM1 | domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624;; (*ITAG) Solyc10g078190.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59372041-59376567 transcript_region:SL2.40ch10:59372041..59376567- functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-*- A3QJV0_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00002744g0108.1 protein AED:0.12 eAED:0.12 QI:4|1|1|1|1|1|12|278|463 NbS00002744g0104.1 protein AED:0.79 eAED:0.79 QI:0|0|0|0.25|1|1|8|0|224 NbS00053521g0005.1 protein AED:0.19 eAED:0.20 QI:0|0.2|0|0.66|1|1|6|0|409; (*TAIR) AT2G28380.1 (e_value=1e-12) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc01g009190.1.1 (e_value=5e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3237158-3239698 transcript_region:SL2.40ch01:3237158..3239698+ go_terms:GO:0005515,GO:0003725 functional_description:"Double-stranded RNA binding protein (AHRD V1 *-** A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005515,GO:0003725 NbS00053521g0002.1 protein AED:0.24 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|218; (*TAIR) AT2G27140.1 (e_value=4e-15) | Symbols: | HSP20-like chaperones superfamily protein | chr2:11598496-11599264 REVERSE LENGTH=224;; (*ITAG) Solyc01g009200.2.1 (e_value=1e-63) genomic_reference:SL2.40ch01 gene_region:3240198-3241560 transcript_region:SL2.40ch01:3240198..3241560- functional_description:"Restricted tev movement 2 (AHRD V1 *--- D5K219_ARATH); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00001936g0008.1 protein AED:0.19 eAED:0.19 QI:26|1|1|1|0.8|0.81|11|469|488; (*SWP) sp|Q8RXK2|SDN3_ARATH (e_value=3e-144) Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1;; (*TAIR) AT5G67240.1 (e_value=2e-145) | Symbols: SDN3 | small RNA degrading nuclease 3 | chr5:26824454-26828098 REVERSE LENGTH=782;; (*ITAG) Solyc10g084160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63151765-63156391 transcript_region:SL2.40ch10:63151765..63156391+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease (AHRD V1 *-*- C0S8V0_PARBP); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00015278g0004.1 protein AED:0.09 eAED:0.09 QI:25|0.5|0.33|0.66|0|0.66|3|0|149 NbS00015278g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|0.5|1|1|2|201|90 NbS00057296g0001.1 protein AED:0.02 eAED:0.02 QI:124|1|1|1|0.33|0.25|4|430|486; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1;; (*TAIR) AT4G11280.1 (e_value=0.0) | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 | chr4:6864168-6865922 FORWARD LENGTH=495;; (*ITAG) Solyc08g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61733933-61736466 transcript_region:SL2.40ch08:61733933..61736466+ go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96580_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00057296g0004.1 protein AED:0.34 eAED:0.34 QI:0|1|0.75|1|0.33|0.5|4|374|134; (*TAIR) AT5G41560.1 (e_value=5e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16621427-16622619 REVERSE LENGTH=101;; (*ITAG) Solyc08g008120.2.1 (e_value=7e-58) genomic_reference:SL2.40ch08 gene_region:2587918-2593071 transcript_region:SL2.40ch08:2587918..2593071- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; NbS00032775g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.87|1|0.93|0.93|16|0|683; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=0.0) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=0.0) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00017990g0001.1 protein AED:0.25 eAED:0.25 QI:409|0.70|0.66|1|0.88|0.83|18|356|589; (*SWP) sp|Q9LHS0|CAP10_ARATH (e_value=0.0) Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1;; (*TAIR) AT5G35200.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr5:13462463-13465581 REVERSE LENGTH=544;; (*ITAG) Solyc07g007820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2482207-2492806 transcript_region:SL2.40ch07:2482207..2492806+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00017990g0020.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|1|1|3|0|388; (*TAIR) AT3G49800.1 (e_value=1e-24) | Symbols: | BSD domain-containing protein | chr3:18471957-18473676 REVERSE LENGTH=428;; (*ITAG) Solyc07g007830.2.1 (e_value=2e-171) genomic_reference:SL2.40ch07 gene_region:2495331-2500572 transcript_region:SL2.40ch07:2495331..2500572+ functional_description:"BSD domain containing protein (AHRD V1 ***- B6TCH2_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00017990g0018.1 protein AED:0.28 eAED:0.28 QI:146|1|1|1|1|1|4|284|882; (*TAIR) AT5G11430.1 (e_value=6e-31) | Symbols: | SPOC domain / Transcription elongation factor S-II protein | chr5:3648469-3652256 FORWARD LENGTH=873;; (*ITAG) Solyc07g007840.1.1 (e_value=2e-154) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2501503-2507317 transcript_region:SL2.40ch07:2501503..2507317- functional_description:"Unknown Protein (AHRD V1)"; NbS00014381g0003.1 protein AED:0.16 eAED:0.16 QI:220|0.94|0.94|1|1|1|18|915|691; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=0.0) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=0.0) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00014381g0006.1 protein AED:0.15 eAED:0.16 QI:44|0|0|1|0|0|3|0|235; (*SWP) sp|Q75HV0|CCP31_ORYSJ (e_value=8e-63) Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1;; (*TAIR) AT3G63120.1 (e_value=4e-57) | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23323143-23323893 REVERSE LENGTH=221;; (*ITAG) Solyc09g065200.2.1 (e_value=3e-132) genomic_reference:SL2.40ch09 gene_region:58774954-58777893 transcript_region:SL2.40ch09:58774954..58777893+ go_terms:GO:0004693 functional_description:"Cyclin-dependent kinase (AHRD V1 **** A6YTD1_CUCME); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0004693 NbS00018664g0004.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0.66|1|1|1|3|0|319; (*ITAG) Solyc06g060090.2.1 (e_value=3e-120) genomic_reference:SL2.40ch06 gene_region:34386124-34395168 transcript_region:SL2.40ch06:34386124..34395168+ go_terms:GO:0031072 functional_description:"UBA/TS-N domain-containing protein (AHRD V1 *--- C1H097_PARBA); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00022435g0101.1 protein AED:0.24 eAED:0.29 QI:0|0|0.5|1|0|0.5|2|332|387 NbS00012288g0003.1 protein AED:0.32 eAED:0.34 QI:0|0.5|0.6|1|1|1|5|247|173; (*SWP) sp|Q0DWQ7|CCB12_ORYSJ (e_value=8e-18) Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1;; (*TAIR) AT5G38660.2 (e_value=6e-60) | Symbols: APE1 | acclimation of photosynthesis to environment | chr5:15471208-15475497 REVERSE LENGTH=431;; (*ITAG) Solyc02g089820.2.1 (e_value=1e-73) genomic_reference:SL2.40ch02 gene_region:46089148-46092029 transcript_region:SL2.40ch02:46089148..46092029- go_terms:GO:0005515 functional_description:"Proteasome maturation protein (AHRD V1 ***- A5HKJ3_RAT); contains Interpro domain(s) IPR008012 Proteasome maturation factor UMP1 "; GO:0005515 NbS00000710g0004.1 protein AED:0.10 eAED:0.12 QI:195|0.77|0.7|1|0.77|0.5|10|0|501; (*SWP) sp|O94260|G3BP_SCHPO (e_value=3e-21) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.1 (e_value=1e-81) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488;; (*ITAG) Solyc09g059310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:49811218-49819177 transcript_region:SL2.40ch09:49811218..49819177+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00037949g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|227; (*TAIR) AT3G04350.1 (e_value=9e-55) | Symbols: | Plant protein of unknown function (DUF946) | chr3:1153972-1156469 REVERSE LENGTH=567;; (*ITAG) Solyc05g055910.2.1 (e_value=1e-70) genomic_reference:SL2.40ch05 gene_region:64508467-64511290 transcript_region:SL2.40ch05:64508467..64511290- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00037949g0010.1 protein AED:0.08 eAED:0.08 QI:887|0.8|0.83|1|0.8|0.83|6|311|282; (*TAIR) AT1G40087.1 (e_value=3e-14) | Symbols: | Plant transposase (Ptta/En/Spm family) | chr1:14999762-15001868 REVERSE LENGTH=390; NbS00037949g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.42|0.62|0.87|1|1|8|0|205; (*SWP) sp|Q8L925|CRC_ARATH (e_value=2e-58) Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2;; (*TAIR) AT1G69180.1 (e_value=1e-59) | Symbols: CRC | Plant-specific transcription factor YABBY family protein | chr1:26007734-26008940 REVERSE LENGTH=181;; (*ITAG) Solyc05g012050.2.1 (e_value=3e-75) genomic_reference:SL2.40ch05 gene_region:5275528-5277367 transcript_region:SL2.40ch05:5275528..5277367- go_terms:GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 ***- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0003700 NbS00003032g0001.1 protein AED:0.22 eAED:0.22 QI:261|0.77|0.9|1|0.77|0.7|10|359|299; (*SWP) sp|Q8RXV3|P2C59_ARATH (e_value=1e-145) Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1;; (*TAIR) AT4G31750.1 (e_value=9e-147) | Symbols: WIN2 | HOPW1-1-interacting 2 | chr4:15364657-15367207 REVERSE LENGTH=311;; (*ITAG) Solyc12g096520.1.1 (e_value=2e-166) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63742671-63748535 transcript_region:SL2.40ch12:63742671..63748535- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8S8Z0_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00003032g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|701; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=5e-150) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=4e-151) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc12g096510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057641g0001.1 protein AED:0.17 eAED:0.17 QI:266|1|1|1|0.83|0.92|13|359|503; (*SWP) sp|P28668|SYEP_DROME (e_value=0.0) Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2;; (*TAIR) AT3G62120.2 (e_value=0.0) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001227-23003849 REVERSE LENGTH=530;; (*ITAG) Solyc06g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00020030g0008.1 protein AED:0.40 eAED:0.71 QI:22|1|0.5|1|1|1|2|0|77 NbS00020030g0011.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|3|0|553; (*TAIR) AT2G15560.1 (e_value=8e-166) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr2:6788319-6789788 REVERSE LENGTH=489;; (*ITAG) Solyc01g108010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87153908-87155525 transcript_region:SL2.40ch01:87153908..87155525- functional_description:"Limkain b1-like protein (AHRD V1 *--- Q66S24_OIKDI); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00045545g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.78|0.73|0.86|0.92|0.86|15|481|616; (*SWP) sp|Q7XTT4|NUCL2_ORYSJ (e_value=6e-73) Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2;; (*TAIR) AT3G18610.1 (e_value=4e-62) | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2 | chr3:6404270-6407822 REVERSE LENGTH=636;; (*ITAG) Solyc02g014310.2.1 (e_value=1e-132) genomic_reference:SL2.40ch02 gene_region:6937097-6941898 transcript_region:SL2.40ch02:6937097..6941898- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00034583g0003.1 protein AED:0.33 eAED:0.33 QI:257|1|0.5|1|1|1|4|0|195; (*SWP) sp|O80366|ARR9_ARATH (e_value=3e-73) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=2e-74) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc10g079600.1.1 (e_value=1e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60427395-60429006 transcript_region:SL2.40ch10:60427395..60429006- go_terms:GO:0006355 functional_description:"Response regulator 6 (AHRD V1 ***- Q9FRY9_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00034234g0006.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.66|1|1|1|3|0|309; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=2e-110) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=2e-111) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc06g069710.2.1 (e_value=9e-150) genomic_reference:SL2.40ch06 gene_region:39809375-39810628 transcript_region:SL2.40ch06:39809375..39810628- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00048827g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|210; (*TAIR) AT2G34580.2 (e_value=3e-33) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Herpesvirus UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:14566673-14567640 REVERSE LENGTH=162; NbS00048827g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|174; (*TAIR) AT1G09310.1 (e_value=6e-51) | Symbols: | Protein of unknown function, DUF538 | chr1:3009109-3009648 FORWARD LENGTH=179;; (*ITAG) Solyc01g100770.2.1 (e_value=7e-82) genomic_reference:SL2.40ch01 gene_region:82477939-82478706 transcript_region:SL2.40ch01:82477939..82478706+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 *-*- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00048827g0008.1 protein AED:0.22 eAED:0.22 QI:121|0.83|0.92|1|0.91|0.92|13|318|448; (*SWP) sp|B5DEQ3|XPP3_RAT (e_value=1e-92) Probable Xaa-Pro aminopeptidase 3 OS=Rattus norvegicus GN=Xpnpep3 PE=1 SV=1;; (*TAIR) AT1G09300.1 (e_value=0.0) | Symbols: | Metallopeptidase M24 family protein | chr1:3003981-3008131 FORWARD LENGTH=493;; (*ITAG) Solyc01g100740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82456990-82467668 transcript_region:SL2.40ch01:82456990..82467668+ go_terms:GO:0030145,GO:0009987 functional_description:"Xaa-pro dipeptidase (AHRD V1 ***- C1GRT5_PARBA); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0030145,GO:0009987 NbS00029681g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|258; (*TAIR) AT2G27260.1 (e_value=9e-36) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11669769-11670500 FORWARD LENGTH=243;; (*ITAG) Solyc11g068900.1.1 (e_value=2e-100) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50552542-50553312 transcript_region:SL2.40ch11:50552542..50553312- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 *-*- Q2RAC3_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00017156g0010.1 protein AED:0.68 eAED:0.68 QI:64|1|0.5|1|0|0.5|2|93|23 NbS00017156g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.4|1|1|0.8|5|0|224; (*SWP) sp|Q7DLS1|PSB7B_ARATH (e_value=7e-107) Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2;; (*TAIR) AT5G40580.3 (e_value=4e-108) | Symbols: PBB2 | 20S proteasome beta subunit PBB2 | chr5:16248511-16250451 REVERSE LENGTH=268;; (*ITAG) Solyc05g013820.2.1 (e_value=8e-113) genomic_reference:SL2.40ch05 gene_region:7123897-7132363 transcript_region:SL2.40ch05:7123897..7132363- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- D7LPH0_ARALY); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00017156g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|135; (*SWP) sp|Q5SMI4|RL393_ORYSJ (e_value=6e-28) 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1;; (*TAIR) AT4G31985.1 (e_value=2e-27) | Symbols: | Ribosomal protein L39 family protein | chr4:15469931-15470366 FORWARD LENGTH=51;; (*ITAG) Solyc12g010350.1.1 (e_value=1e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3407686-3408755 transcript_region:SL2.40ch12:3407686..3408755+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L39 (AHRD V1 ***- D3GC11_9ROSI); contains Interpro domain(s) IPR000077 Ribosomal protein L39e "; GO:0005840 NbS00031809g0003.1 protein AED:0.02 eAED:0.02 QI:32|1|1|1|1|1|3|386|138; (*TAIR) AT1G07645.1 (e_value=6e-73) | Symbols: ATDSI-1VOC, DSI-1VOC | dessication-induced 1VOC superfamily protein | chr1:2367612-2368349 REVERSE LENGTH=137;; (*ITAG) Solyc06g075990.2.1 (e_value=5e-93) genomic_reference:SL2.40ch06 gene_region:43569520-43570458 transcript_region:SL2.40ch06:43569520..43570458+ go_terms:GO:0003824 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- A1WPN3_VEREI); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0003824 NbS00057038g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.42|1|1|1|7|0|851; (*SWP) sp|Q9LH74|MSL5_ARATH (e_value=0.0) Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1;; (*TAIR) AT3G14810.1 (e_value=0.0) | Symbols: MSL5 | mechanosensitive channel of small conductance-like 5 | chr3:4971223-4974216 REVERSE LENGTH=881;; (*ITAG) Solyc04g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63439571-63444065 transcript_region:SL2.40ch04:63439571..63444065+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 *-*- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00001591g0001.1 protein AED:0.45 eAED:0.81 QI:0|0|0|0.2|1|1|5|0|405; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=4e-12) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=3e-13) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g110070.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:88629628-88631918 transcript_region:SL2.40ch01:88629628..88631918+ go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00009418g0015.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0|0.33|3|0|348; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=2e-101) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G12260.1 (e_value=1e-102) | Symbols: VND4, EMB2749, ANAC007, NAC007 | NAC 007 | chr1:4163058-4164486 REVERSE LENGTH=395;; (*ITAG) Solyc06g034340.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20774519-20776461 transcript_region:SL2.40ch06:20774519..20776461- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9ICS8_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00009418g0014.1 protein AED:0.31 eAED:0.31 QI:0|0.9|0.72|1|0.9|0.90|11|578|583; (*SWP) sp|Q8VYC8|RIN2_ARATH (e_value=0.0) E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2 PE=1 SV=1;; (*TAIR) AT4G25230.2 (e_value=0.0) | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:12924446-12928671 FORWARD LENGTH=578;; (*ITAG) Solyc06g034330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:20751058-20768833 transcript_region:SL2.40ch06:20751058..20768833+ go_terms:GO:0005515,GO:0004842 functional_description:"E3 ubiquitin ligase (AHRD V1 *--* Q2URX1_ASPOR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00009418g0009.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|84; (*SWP) sp|Q8VYC8|RIN2_ARATH (e_value=3e-15) E3 ubiquitin protein ligase RIN2 OS=Arabidopsis thaliana GN=RIN2 PE=1 SV=1;; (*TAIR) AT4G25230.2 (e_value=2e-16) | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:12924446-12928671 FORWARD LENGTH=578;; (*ITAG) Solyc06g034330.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:20751058-20768833 transcript_region:SL2.40ch06:20751058..20768833+ go_terms:GO:0005515,GO:0004842 functional_description:"E3 ubiquitin ligase (AHRD V1 *--* Q2URX1_ASPOR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00014467g0008.1 protein AED:0.30 eAED:0.34 QI:0|0.58|0.46|1|0.58|0.69|13|0|406; (*SWP) sp|Q0WVE9|PLST1_ARATH (e_value=9e-102) Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2;; (*TAIR) AT1G05030.1 (e_value=7e-103) | Symbols: | Major facilitator superfamily protein | chr1:1438324-1441385 REVERSE LENGTH=524;; (*ITAG) Solyc07g049310.2.1 (e_value=8e-132) genomic_reference:SL2.40ch07 gene_region:56883036-56891636 transcript_region:SL2.40ch07:56883036..56891636+ go_terms:GO:0015519,GO:0008506 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519,GO:0008506 NbS00014467g0009.1 protein AED:0.11 eAED:0.11 QI:206|0.75|0.8|1|1|1|5|205|500; (*SWP) sp|O48766|GUN11_ARATH (e_value=0.0) Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990 PE=2 SV=1;; (*TAIR) AT2G32990.1 (e_value=0.0) | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 | chr2:14003361-14005844 FORWARD LENGTH=525;; (*ITAG) Solyc07g049300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56872325-56876111 transcript_region:SL2.40ch07:56872325..56876111- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00030274g0005.1 protein AED:0.14 eAED:0.14 QI:123|1|1|1|1|1|3|206|154; (*SWP) sp|Q07761|RL23A_TOBAC (e_value=5e-64) 60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1;; (*TAIR) AT3G55280.2 (e_value=5e-58) | Symbols: RPL23AB | ribosomal protein L23AB | chr3:20500667-20501519 FORWARD LENGTH=154;; (*ITAG) Solyc09g005720.2.1 (e_value=7e-63) genomic_reference:SL2.40ch09 gene_region:498274-500367 transcript_region:SL2.40ch09:498274..500367- go_terms:GO:0003735,GO:0019843 functional_description:"60S ribosomal protein L23a (AHRD V1 ***- B6TN30_MAIZE); contains Interpro domain(s) IPR001014 Ribosomal protein L23/L25, conserved site "; GO:0003735,GO:0019843 NbS00030274g0007.1 protein AED:0.24 eAED:0.25 QI:0|0.25|0|0.8|0.5|0.8|5|0|925; (*SWP) sp|Q9C5S1|MKP1_ARATH (e_value=0.0) Protein-tyrosine-phosphatase MKP1 OS=Arabidopsis thaliana GN=MKP1 PE=1 SV=1;; (*TAIR) AT3G55270.1 (e_value=0.0) | Symbols: MKP1, ATMKP1 | mitogen-activated protein kinase phosphatase 1 | chr3:20496775-20499408 FORWARD LENGTH=784;; (*ITAG) Solyc05g054700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63700595-63704199 transcript_region:SL2.40ch05:63700595..63704199- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase 1 (AHRD V1 *-*- Q28HA6_XENTR); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00049865g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|387; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=4e-106) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=3e-107) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc02g087040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44158457-44159629 transcript_region:SL2.40ch02:44158457..44159629- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00015156g0004.1 protein AED:0.01 eAED:0.06 QI:0|0|0|1|0|0|2|0|553; (*SWP) sp|Q9LZR8|Y5370_ARATH (e_value=2e-137) PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana GN=At5g03700 PE=1 SV=1;; (*TAIR) AT5G03700.1 (e_value=1e-138) | Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr5:965874-967322 REVERSE LENGTH=482;; (*ITAG) Solyc09g009150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2488251-2489759 transcript_region:SL2.40ch09:2488251..2489759+ go_terms:GO:0005529 functional_description:"D-mannose binding lectin family protein expressed (AHRD V1 *--- Q10JE9_ORYSJ); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00018550g0004.1 protein AED:0.04 eAED:0.04 QI:267|1|0|1|1|1|2|0|78; (*SWP) sp|Q940A2|P2C31_ARATH (e_value=4e-33) Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1;; (*TAIR) AT2G40860.1 (e_value=3e-34) | Symbols: | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein | chr2:17053747-17057108 REVERSE LENGTH=658;; (*ITAG) Solyc01g056690.2.1 (e_value=7e-45) genomic_reference:SL2.40ch01 gene_region:48822668-48837909 transcript_region:SL2.40ch01:48822668..48837909- go_terms:GO:0006468,GO:0003824 functional_description:"Kinase family protein (AHRD V1 ***- D7LFV3_ARALY); contains Interpro domain(s) IPR014045 Protein phosphatase 2C, N-terminal "; GO:0006468,GO:0003824 NbS00035604g0003.1 protein AED:0.06 eAED:0.06 QI:283|1|1|1|1|1|9|291|592; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=0.0) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT4G12420.2 (e_value=0.0) | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587;; (*ITAG) Solyc08g079090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59901779-59905784 transcript_region:SL2.40ch08:59901779..59905784+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00027239g0008.1 protein AED:0.08 eAED:0.09 QI:84|0.5|0.33|1|0.5|0.33|3|0|515; (*SWP) sp|Q9C8D4|AAE11_ARATH (e_value=0.0) Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1;; (*TAIR) AT1G66120.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:24612640-24614690 FORWARD LENGTH=572;; (*ITAG) Solyc02g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39931191-39933262 transcript_region:SL2.40ch02:39931191..39933262+ go_terms:GO:0004467,GO:0018858 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** D0J2H7_COMT2); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467,GO:0018858 NbS00003880g0021.1 protein AED:0.10 eAED:0.11 QI:0|0.86|0.87|1|0.86|0.81|16|706|871; (*SWP) sp|Q6NQ81|PP304_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g04790, mitochondrial OS=Arabidopsis thaliana GN=At4g04790 PE=2 SV=2;; (*TAIR) AT4G04790.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2435007-2439344 REVERSE LENGTH=821;; (*ITAG) Solyc07g064110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63606120-63618223 transcript_region:SL2.40ch07:63606120..63618223- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEM9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003880g0024.1 protein AED:0.28 eAED:0.28 QI:0|0.4|0|1|0.8|0.66|6|0|449; (*SWP) sp|Q9LSJ5|AB18B_ARATH (e_value=3e-133) ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1;; (*TAIR) AT3G28390.1 (e_value=2e-134) | Symbols: PGP18 | P-glycoprotein 18 | chr3:10629425-10633967 REVERSE LENGTH=1225;; (*ITAG) Solyc07g064120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63619807-63625362 transcript_region:SL2.40ch07:63619807..63625362+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00003880g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|164; (*ITAG) Solyc01g056950.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00003880g0023.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0.33|3|0|396; (*SWP) sp|Q6YUU5|MDR_ORYSJ (e_value=1e-84) Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1;; (*TAIR) AT3G28345.1 (e_value=9e-85) | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240;; (*ITAG) Solyc07g064120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63619807-63625362 transcript_region:SL2.40ch07:63619807..63625362+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00003880g0020.1 protein AED:0.53 eAED:0.53 QI:0|0.5|0.33|0.66|0.5|0.66|3|0|84; (*SWP) sp|O23463|CMTA5_ARATH (e_value=2e-23) Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2;; (*TAIR) AT4G16150.1 (e_value=2e-24) | Symbols: | calmodulin binding;transcription regulators | chr4:9148225-9153048 FORWARD LENGTH=923;; (*ITAG) Solyc12g099340.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64864264-64872889 transcript_region:SL2.40ch12:64864264..64872889- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 5 (AHRD V1 **** D7MA72_ARALY); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00003880g0017.1 protein AED:0.28 eAED:0.62 QI:0|0|0|1|0|0|2|0|97; (*SWP) sp|Q9LT47|FIE_ARATH (e_value=2e-19) Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2;; (*TAIR) AT3G20740.1 (e_value=2e-20) | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like superfamily protein | chr3:7249064-7252254 REVERSE LENGTH=369;; (*ITAG) Solyc07g064090.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:63598484-63603661 transcript_region:SL2.40ch07:63598484..63603661- go_terms:GO:0042802 functional_description:"Fertilization-independent endosperm protein (AHRD V1 **-- B0LUT0_SOLLC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00003880g0123.1 protein AED:0.03 eAED:0.03 QI:128|1|0.83|1|0.8|0.66|6|452|649 NbS00003880g0126.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|0.9|0.44|0.6|10|212|923 NbS00003880g0121.1 protein AED:0.15 eAED:0.26 QI:0|0.87|0.77|1|0.87|0.88|9|14|277 NbS00003880g0114.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|145 NbS00003880g0128.1 protein AED:0.25 eAED:0.25 QI:0|0.64|0.5|0.77|0.76|0.83|18|0|1104 NbS00025375g0010.1 protein AED:0.30 eAED:0.30 QI:0|1|0.66|1|0.8|0.66|6|568|229; (*SWP) sp|P31166|APT1_ARATH (e_value=7e-96) Adenine phosphoribosyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=APT1 PE=1 SV=2;; (*TAIR) AT4G22570.1 (e_value=4e-102) | Symbols: APT3 | adenine phosphoribosyl transferase 3 | chr4:11882310-11885250 REVERSE LENGTH=183;; (*ITAG) Solyc08g079020.2.1 (e_value=5e-122) genomic_reference:SL2.40ch08 gene_region:59830669-59836240 transcript_region:SL2.40ch08:59830669..59836240- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like protein (AHRD V1 **** Q8LG17_ARATH); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00025375g0004.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|101 NbS00025375g0002.1 protein AED:0.15 eAED:0.16 QI:191|1|0.75|1|0|0|4|16|297; (*TAIR) AT1G62520.1 (e_value=3e-75) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 388 Blast hits to 388 proteins in 26 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 8; Plants - 376; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:23144506-23145348 FORWARD LENGTH=280;; (*ITAG) Solyc08g079010.1.1 (e_value=1e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59828334-59828810 transcript_region:SL2.40ch08:59828334..59828810+ functional_description:"Os04g0690100 protein (Fragment) (AHRD V1 ***- Q0J8S4_ORYSJ)"; NbS00042363g0004.1 protein AED:0.29 eAED:0.29 QI:95|1|1|1|0.25|0.2|5|264|361; (*SWP) sp|Q8LB81|GDL79_ARATH (e_value=0.0) GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1;; (*TAIR) AT5G33370.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602773-12604670 REVERSE LENGTH=366;; (*ITAG) Solyc06g083650.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45279384-45283000 transcript_region:SL2.40ch06:45279384..45283000- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00042488g0005.1 protein AED:0.08 eAED:0.08 QI:283|1|1|1|1|1|2|406|282; (*TAIR) AT5G18130.1 (e_value=3e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5995634-5997165 FORWARD LENGTH=280;; (*ITAG) Solyc10g078590.1.1 (e_value=8e-82) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59689717-59691185 transcript_region:SL2.40ch10:59689717..59691185- functional_description:"Unknown Protein (AHRD V1)"; NbS00010097g0010.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|409; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=3e-47) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=8e-60) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc11g069680.1.1 (e_value=3e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51381262-51382686 transcript_region:SL2.40ch11:51381262..51382686+ go_terms:GO:0016747 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X8_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00010097g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|89; (*SWP) sp|P05494|ATPAM_MAIZE (e_value=1e-29) ATP synthase subunit alpha, mitochondrial OS=Zea mays GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=2e-27) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc11g039980.1.1 (e_value=7e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:28095562-28096080 transcript_region:SL2.40ch11:28095562..28096080- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- Q5M9V4_TOBAC); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00010097g0009.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.4|1|1|5|0|209; (*SWP) sp|Q6L5F7|MPK17_ORYSJ (e_value=7e-25) Mitogen-activated protein kinase 17 OS=Oryza sativa subsp. japonica GN=MPK17 PE=2 SV=2;; (*TAIR) AT2G01450.4 (e_value=3e-24) | Symbols: ATMPK17, MPK17 | MAP kinase 17 | chr2:199722-202010 REVERSE LENGTH=486;; (*ITAG) Solyc06g068990.2.1 (e_value=3e-28) genomic_reference:SL2.40ch06 gene_region:39197548-39203557 transcript_region:SL2.40ch06:39197548..39203557+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00011872g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|4|0|223; (*SWP) sp|Q93WX6|NFS2_ARATH (e_value=1e-60) Cysteine desulfurase 2, chloroplastic OS=Arabidopsis thaliana GN=NFS2 PE=1 SV=1;; (*TAIR) AT1G08490.1 (e_value=7e-62) | Symbols: ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | chloroplastic NIFS-like cysteine desulfurase | chr1:2685980-2688547 REVERSE LENGTH=463;; (*ITAG) Solyc05g055000.2.1 (e_value=3e-67) genomic_reference:SL2.40ch05 gene_region:63922322-63931643 transcript_region:SL2.40ch05:63922322..63931643+ go_terms:GO:0031071,GO:0009000 functional_description:"Cysteine desulfurase (AHRD V1 **** Q10WM4_TRIEI); contains Interpro domain(s) IPR010970 Cysteine desulfurase, SufS "; GO:0031071,GO:0009000 NbS00011872g0001.1 protein AED:0.69 eAED:0.75 QI:324|0|0|0.4|1|1|5|0|120 NbS00006168g0002.1 protein AED:0.11 eAED:0.11 QI:37|0.5|1|1|1|1|3|66|159; (*TAIR) AT2G43190.2 (e_value=6e-17) | Symbols: | ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=295;; (*ITAG) Solyc09g007370.2.1 (e_value=3e-61) genomic_reference:SL2.40ch09 gene_region:965176-969869 transcript_region:SL2.40ch09:965176..969869- go_terms:GO:0005655,GO:0030677 functional_description:"Ribonuclease P protein subunit p29 (AHRD V1 *-*- C1BL44_OSMMO); contains Interpro domain(s) IPR016848 Ribonuclease P/MRP, p29 subunit, eukaryotic "; GO:0005655,GO:0030677 NbS00006168g0008.1 protein AED:0.11 eAED:0.11 QI:168|0|0|1|0|0|2|0|473; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=6e-108) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT1G01300.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:117065-118522 FORWARD LENGTH=485;; (*ITAG) Solyc01g096040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78888446-78890253 transcript_region:SL2.40ch01:78888446..78890253- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00028275g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.5|0.71|7|134|269; (*SWP) sp|P49842|STK19_HUMAN (e_value=2e-22) Serine/threonine-protein kinase 19 OS=Homo sapiens GN=STK19 PE=1 SV=2;; (*TAIR) AT2G20495.1 (e_value=6e-114) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:8833180-8835034 FORWARD LENGTH=282;; (*ITAG) Solyc06g008350.2.1 (e_value=2e-167) genomic_reference:SL2.40ch06 gene_region:2221135-2228530 transcript_region:SL2.40ch06:2221135..2228530+ functional_description:"Serine/threonine-protein kinase 19 (AHRD V1 ***- B6TW02_MAIZE); contains Interpro domain(s) IPR018865 Serine-threonine protein kinase 19 "; NbS00028275g0005.1 protein AED:0.24 eAED:0.24 QI:26|1|1|1|0|0|3|275|64; (*SWP) sp|Q93XX8|NOP10_ARATH (e_value=4e-35) H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=2;; (*TAIR) AT2G20490.1 (e_value=3e-36) | Symbols: NOP10, EDA27 | nucleolar RNA-binding Nop10p family protein | chr2:8831897-8832723 FORWARD LENGTH=64; NbS00059075g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.75|1|1|1|4|417|298; (*SWP) sp|Q8W4L0|CML49_ARATH (e_value=2e-84) Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1;; (*TAIR) AT3G10300.3 (e_value=2e-85) | Symbols: | Calcium-binding EF-hand family protein | chr3:3186436-3188071 FORWARD LENGTH=335;; (*ITAG) Solyc10g079890.1.1 (e_value=2e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60678575-60681240 transcript_region:SL2.40ch10:60678575..60681240- go_terms:GO:0005509 functional_description:"Calpain-2 catalytic subunit (AHRD V1 *--- CAN2_CHICK); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00061705g0003.1 protein AED:0.00 eAED:0.00 QI:183|1|1|1|1|1|2|335|337; (*TAIR) AT3G13780.1 (e_value=9e-45) | Symbols: | SMAD/FHA domain-containing protein | chr3:4525108-4526214 FORWARD LENGTH=309;; (*ITAG) Solyc06g062700.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:35964295-35965844 transcript_region:SL2.40ch06:35964295..35965844+ functional_description:"Genomic DNA chromosome 3 P1 clone MMM17 (AHRD V1 ***- Q9LIC1_ARATH); contains Interpro domain(s) IPR008984 SMAD/FHA domain "; NbS00051966g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|342; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=1e-72) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=1e-73) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc08g077320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58386450-58388369 transcript_region:SL2.40ch08:58386450..58388369+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015898g0016.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|1|1|1|3|0|139; (*ITAG) Solyc07g042790.1.1 (e_value=3e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53607997-53618970 transcript_region:SL2.40ch07:53607997..53618970+ functional_description:"Helicase-like protein (AHRD V1 ***- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00015898g0013.1 protein AED:0.44 eAED:0.48 QI:0|0.63|0.5|0.75|0.63|0.75|12|0|289; (*SWP) sp|Q9UTC5|YIDE_SCHPO (e_value=2e-35) Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=2 SV=1;; (*TAIR) AT1G03030.1 (e_value=1e-123) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:701621-703568 FORWARD LENGTH=301;; (*ITAG) Solyc09g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59719773-59727045 transcript_region:SL2.40ch09:59719773..59727045- go_terms:GO:0005515 functional_description:"Uridine kinase (AHRD V1 ***- A9T6I2_PHYPA); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0005515 NbS00015898g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|173; (*SWP) sp|Q40477|ERF4_TOBAC (e_value=9e-21) Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1;; (*TAIR) AT1G50640.1 (e_value=5e-21) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc02g077840.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37265510-37265974 transcript_region:SL2.40ch02:37265510..37265974- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 **** C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00015898g0015.1 protein AED:0.31 eAED:0.31 QI:77|0.77|0.8|0.9|0.77|0.8|10|0|358; (*SWP) sp|Q9SS90|RGLG1_ARATH (e_value=2e-97) E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1;; (*TAIR) AT5G63970.2 (e_value=1e-119) | Symbols: | Copine (Calcium-dependent phospholipid-binding protein) family | chr5:25607006-25608916 REVERSE LENGTH=367;; (*ITAG) Solyc09g065870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59739141-59746647 transcript_region:SL2.40ch09:59739141..59746647+ go_terms:GO:0008270 functional_description:"Copine I-like (AHRD V1 ***- Q5JMT9_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0008270 NbS00015898g0014.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.5|0.33|0.5|4|0|141 NbS00011131g0010.1 protein AED:0.27 eAED:0.29 QI:234|0.66|0.42|1|0.5|0.57|7|0|483; (*TAIR) AT2G17970.1 (e_value=1e-89) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:7819116-7821276 REVERSE LENGTH=507;; (*ITAG) Solyc02g083960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41782529-41787702 transcript_region:SL2.40ch02:41782529..41787702- go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00011131g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|196; (*TAIR) AT2G17972.1 (e_value=1e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7821624-7822100 FORWARD LENGTH=158;; (*ITAG) Solyc02g083970.1.1 (e_value=2e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41788684-41789169 transcript_region:SL2.40ch02:41788684..41789169+ functional_description:"Chromosome 18 contig 1 DNA sequence (AHRD V1 *-*- Q00SS6_OSTTA)"; NbS00011131g0011.1 protein AED:0.07 eAED:0.07 QI:769|0.42|0.5|1|0.57|0.62|8|439|490; (*SWP) sp|Q69SG5|GUN24_ORYSJ (e_value=0.0) Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1;; (*TAIR) AT1G19940.1 (e_value=0.0) | Symbols: AtGH9B5, GH9B5 | glycosyl hydrolase 9B5 | chr1:6918323-6920268 REVERSE LENGTH=515;; (*ITAG) Solyc02g083980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41789933-41792962 transcript_region:SL2.40ch02:41789933..41792962+ go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00050332g0006.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|2|0|128; (*ITAG) Solyc08g074530.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00050332g0007.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|64; (*ITAG) Solyc08g048470.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00039454g0001.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.83|0.71|7|344|298; (*TAIR) AT4G24175.1 (e_value=9e-65) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12547018-12548810 FORWARD LENGTH=306;; (*ITAG) Solyc04g081540.2.1 (e_value=2e-148) genomic_reference:SL2.40ch04 gene_region:63073475-63077797 transcript_region:SL2.40ch04:63073475..63077797+ functional_description:"Kinesin heavy chain isolog (AHRD V1 ***- B6TA17_MAIZE); contains Interpro domain(s) IPR006839 Uncharacterised protein family UPF0307 "; NbS00010547g0011.1 protein AED:0.28 eAED:0.28 QI:166|0.75|0.8|1|0.5|0.4|5|390|100; (*SWP) sp|O82702|VATG1_TOBAC (e_value=8e-48) V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1;; (*TAIR) AT3G01390.2 (e_value=2e-31) | Symbols: VMA10, AVMA10 | vacuolar membrane ATPase 10 | chr3:150265-150922 REVERSE LENGTH=110;; (*ITAG) Solyc04g049330.2.1 (e_value=1e-39) genomic_reference:SL2.40ch04 gene_region:40646720-40649557 transcript_region:SL2.40ch04:40646720..40649557+ go_terms:GO:0046933 functional_description:"V-type proton ATPase subunit G 1 (AHRD V1 ***- VATG1_TOBAC); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0046933 NbS00010547g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|1|0.75|0.8|5|0|275; (*ITAG) Solyc04g049340.2.1 (e_value=1e-112) genomic_reference:SL2.40ch04 gene_region:40649408-40652294 transcript_region:SL2.40ch04:40649408..40652294- go_terms:GO:0005275 functional_description:"Tyrosine-specific transport protein (AHRD V1 *-*- D6YUH8_WADCW); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; GO:0005275 NbS00011039g0011.1 protein AED:0.23 eAED:0.23 QI:146|1|1|1|0|0|2|124|149; (*ITAG) Solyc09g008080.2.1 (e_value=1e-57) genomic_reference:SL2.40ch09 gene_region:1552112-1555112 transcript_region:SL2.40ch09:1552112..1555112+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019955 Ubiquitin supergroup "; NbS00011039g0009.1 protein AED:0.07 eAED:0.07 QI:203|0.87|0.77|1|0.87|1|9|0|572; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=1e-77) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT2G36990.1 (e_value=3e-164) | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase sigma-subunit F | chr2:15537502-15540016 REVERSE LENGTH=547;; (*ITAG) Solyc09g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1508019-1514485 transcript_region:SL2.40ch09:1508019..1514485+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 ***- D7LJA3_ARALY); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00011039g0013.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.88|0.25|0.44|9|0|519; (*SWP) sp|Q38898|AKT2_ARATH (e_value=5e-103) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=4e-104) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=8e-129) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00043351g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.8|1|1|1|5|594|359; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=3e-76) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT1G12760.1 (e_value=2e-77) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:4348728-4350512 FORWARD LENGTH=408;; (*ITAG) Solyc01g091600.2.1 (e_value=6e-117) genomic_reference:SL2.40ch01 gene_region:76945255-76949653 transcript_region:SL2.40ch01:76945255..76949653- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 *-*- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00012579g0009.1 protein AED:0.05 eAED:0.06 QI:0|0.57|0.62|1|1|1|8|0|756; (*SWP) sp|Q7Y208|GLPQ3_ARATH (e_value=2e-143) Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2;; (*TAIR) AT5G58170.1 (e_value=0.0) | Symbols: SVL5 | SHV3-like 5 | chr5:23540261-23543092 REVERSE LENGTH=750;; (*ITAG) Solyc02g014530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:8136473-8141167 transcript_region:SL2.40ch02:8136473..8141167+ go_terms:GO:0016301 functional_description:"Glycerophosphoryl diester phosphodiesterase family protein (AHRD V1 ***- D7MPL3_ARALY); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0016301 NbS00012579g0124.1 protein AED:0.29 eAED:0.29 QI:0|0.83|0.57|1|1|1|7|0|352 NbS00012579g0116.1 protein AED:0.33 eAED:0.33 QI:495|0|0.5|0.5|1|1|2|0|70 NbS00012579g0125.1 protein AED:0.03 eAED:0.03 QI:0|1|0.88|1|0.87|0.88|17|417|1547 NbS00012579g0103.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|1|1|3|0|398 NbS00012579g0101.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|79 NbS00012579g0110.1 protein AED:0.99 eAED:1.00 QI:0|0|0|0.2|1|1|5|0|212 NbS00010316g0004.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0.5|2|0|148; (*SWP) sp|P22335|HSF24_SOLPE (e_value=3e-21) Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1;; (*TAIR) AT4G36990.1 (e_value=2e-22) | Symbols: HSF4, HSFB1, AT-HSFB1, ATHSF4 | heat shock factor 4 | chr4:17440660-17441706 FORWARD LENGTH=284;; (*ITAG) Solyc02g078340.2.1 (e_value=2e-36) genomic_reference:SL2.40ch02 gene_region:37643661-37646059 transcript_region:SL2.40ch02:37643661..37646059+ go_terms:GO:0003700 functional_description:"Heat stress transcription factor (AHRD V1 **** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00010316g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|156; (*SWP) sp|P45083|Y1161_HAEIN (e_value=8e-13) Putative esterase HI_1161 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1161 PE=1 SV=1;; (*TAIR) AT1G48320.1 (e_value=7e-64) | Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156;; (*ITAG) Solyc03g006440.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1038528-1039007 transcript_region:SL2.40ch03:1038528..1039007- go_terms:GO:0005515,GO:0016291 functional_description:"Thioesterase superfamily protein (AHRD V1 **-* C6C3W2_DICDC); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0005515,GO:0016291 NbS00010424g0008.1 protein AED:0.04 eAED:0.04 QI:200|0.71|0.75|0.87|0.71|0.62|8|661|1438; (*TAIR) AT2G34780.1 (e_value=8e-33) | Symbols: EMB1611, MEE22 | maternal effect embryo arrest 22 | chr2:14668653-14673607 FORWARD LENGTH=1297;; (*ITAG) Solyc02g022870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14976721-14987190 transcript_region:SL2.40ch02:14976721..14987190- functional_description:"EMB1611/MEE22 (AHRD V1 *-*- D7LH45_ARALY)"; NbS00010424g0001.1 protein AED:0.18 eAED:0.33 QI:0|0|0|1|1|1|3|0|491; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=4e-130) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20840.1 (e_value=2e-144) | Symbols: | FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539;; (*ITAG) Solyc02g022850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:14916195-14917820 transcript_region:SL2.40ch02:14916195..14917820- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00013340g0001.1 protein AED:0.18 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|75 NbS00013340g0102.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|191 NbS00013340g0203.1 protein AED:0.01 eAED:0.01 QI:314|1|1|1|1|1|3|437|171 NbS00010564g0008.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|0.5|2|0|475; (*SWP) sp|Q2MY58|PATA3_SOLTU (e_value=3e-30) Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G39220.1 (e_value=0.0) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc05g056030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00024922g0001.1 protein AED:0.00 eAED:0.00 QI:177|1|0.75|1|0|0|4|499|93; (*TAIR) AT1G65032.1 (e_value=2e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:24158895-24159170 REVERSE LENGTH=91;; (*ITAG) Solyc01g081120.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:72958906-72961480 transcript_region:SL2.40ch01:72958906..72961480- functional_description:"F16G16.3 protein (Fragment) (AHRD V1 ***- Q9SS56_ARATH)"; NbS00059701g0001.1 protein AED:0.39 eAED:0.39 QI:69|0.8|1|1|0.8|0.66|6|380|104; (*TAIR) AT5G66410.1 (e_value=1e-19) | Symbols: PLP3b | phosducin-like protein 3 homolog | chr5:26519909-26521459 FORWARD LENGTH=230;; (*ITAG) Solyc02g062540.2.1 (e_value=1e-28) genomic_reference:SL2.40ch02 gene_region:28824062-28828907 transcript_region:SL2.40ch02:28824062..28828907- go_terms:GO:0048487 functional_description:"Thioredoxin domain containing 9 (AHRD V1 *--- Q5M8C7_RAT); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00059701g0002.1 protein AED:0.43 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|171; (*SWP) sp|P24068|OCS1_MAIZE (e_value=3e-17) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=2e-38) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc02g084860.1.1 (e_value=4e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42509369-42509803 transcript_region:SL2.40ch02:42509369..42509803- go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **-* C0KYN1_SOLLC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00003949g0010.1 protein AED:0.00 eAED:0.00 QI:247|1|1|1|1|1|9|299|406; (*TAIR) AT5G12470.1 (e_value=1e-148) | Symbols: | Protein of unknown function (DUF3411) | chr5:4044950-4047290 REVERSE LENGTH=386;; (*ITAG) Solyc11g065490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48011022-48019767 transcript_region:SL2.40ch11:48011022..48019767- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q015C3_OSTTA)"; NbS00003949g0014.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0|0.5|2|0|405; (*TAIR) AT5G12460.1 (e_value=7e-115) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47998020-48000222 transcript_region:SL2.40ch11:47998020..48000222+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00003949g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.16|1|1|6|0|601; (*SWP) sp|Q9C8J6|PLA17_ARATH (e_value=0.0) Phospholipase A1-Igamma3, chloroplastic OS=Arabidopsis thaliana GN=At1g51440 PE=1 SV=1;; (*TAIR) AT1G51440.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:19070971-19072554 FORWARD LENGTH=527;; (*ITAG) Solyc11g065530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48054992-48056506 transcript_region:SL2.40ch11:48054992..48056506- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00003949g0015.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|0|0.5|2|0|103; (*ITAG) Solyc11g065470.1.1 (e_value=6e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47998020-48000222 transcript_region:SL2.40ch11:47998020..48000222+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00003949g0016.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0|1|0.66|0.5|4|0|527; (*TAIR) AT5G12460.1 (e_value=3e-122) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47998020-48000222 transcript_region:SL2.40ch11:47998020..48000222+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00011135g0010.1 protein AED:0.26 eAED:0.27 QI:337|0.91|0.84|1|0.91|0.92|13|0|842; (*TAIR) AT3G04260.1 (e_value=0.0) | Symbols: PTAC3 | plastid transcriptionally active 3 | chr3:1123231-1127515 REVERSE LENGTH=910;; (*ITAG) Solyc04g050540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46684389-46704238 transcript_region:SL2.40ch04:46684389..46704238- go_terms:GO:0003677 functional_description:"Pentatricopeptide repeat protein (AHRD V1 *-*- Q1G1I8_MAIZE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003677 NbS00011135g0011.1 protein AED:0.46 eAED:0.54 QI:0|0|0|0.66|0|0.33|6|0|278; (*ITAG) Solyc01g059760.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00016633g0001.1 protein AED:0.04 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|759; (*SWP) sp|Q9CA58|PP120_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1;; (*TAIR) AT1G74580.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28020777-28023068 FORWARD LENGTH=763;; (*ITAG) Solyc12g035170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:23288291-23291860 transcript_region:SL2.40ch12:23288291..23291860+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016633g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.66|0.66|0.5|0.33|3|574|86 NbS00016633g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.5|0.66|1|0|0.33|3|507|884; (*SWP) sp|Q9CA56|PP121_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1;; (*TAIR) AT1G74600.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:28025153-28027840 REVERSE LENGTH=895;; (*ITAG) Solyc01g110010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88594067-88596931 transcript_region:SL2.40ch01:88594067..88596931- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- Q6PRD0_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00016633g0206.1 protein AED:0.22 eAED:0.22 QI:0|0|0.5|1|1|1|2|71|397 NbS00016633g0204.1 protein AED:0.42 eAED:0.54 QI:0|0|0|1|1|1|2|0|114 NbS00015982g0010.1 protein AED:0.01 eAED:0.07 QI:497|0|0.5|1|0|0.5|2|0|156 NbS00015982g0001.1 protein AED:0.07 eAED:0.07 QI:1680|1|1|1|0.25|0.2|5|96|526; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=6e-114) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc06g048950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28521770-28525682 transcript_region:SL2.40ch06:28521770..28525682+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015982g0008.1 protein AED:0.12 eAED:0.12 QI:484|0.83|0.85|1|0.66|0.71|7|293|530; (*TAIR) AT5G05240.1 (e_value=4e-67) | Symbols: | Uncharacterised conserved protein (UCP030365) | chr5:1554023-1556230 REVERSE LENGTH=530;; (*ITAG) Solyc06g048970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28609817-28613929 transcript_region:SL2.40ch06:28609817..28613929- functional_description:"At2g40630/T2P4.2 (AHRD V1 *-*- Q94EI6_ARATH)"; NbS00008014g0006.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|313; (*TAIR) AT5G06610.1 (e_value=1e-122) | Symbols: | Protein of unknown function (DUF620) | chr5:2029953-2033620 FORWARD LENGTH=368;; (*ITAG) Solyc03g051920.2.1 (e_value=5e-176) genomic_reference:SL2.40ch03 gene_region:19365833-19368478 transcript_region:SL2.40ch03:19365833..19368478+ go_terms:GO:0005515 functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; GO:0005515 NbS00008014g0005.1 protein AED:0.53 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|86; (*ITAG) Solyc03g051920.2.1 (e_value=2e-23) genomic_reference:SL2.40ch03 gene_region:19365833-19368478 transcript_region:SL2.40ch03:19365833..19368478+ go_terms:GO:0005515 functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; GO:0005515 NbS00024953g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|181; (*SWP) sp|P51192|YCF52_PORPU (e_value=4e-31) Uncharacterized N-acetyltransferase ycf52 OS=Porphyra purpurea GN=ycf52 PE=3 SV=1;; (*TAIR) AT1G26220.1 (e_value=9e-85) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:9071157-9071750 FORWARD LENGTH=197;; (*ITAG) Solyc05g010250.1.1 (e_value=6e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4421294-4421869 transcript_region:SL2.40ch05:4421294..4421869- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q31BX2_PROM9); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00020450g0007.1 protein AED:0.41 eAED:0.44 QI:0|0|0|0.57|0.5|0.28|7|0|347; (*ITAG) Solyc01g094420.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00020450g0002.1 protein AED:0.01 eAED:0.01 QI:143|0|0.5|1|0|0.5|2|260|180; (*TAIR) AT4G39730.1 (e_value=6e-69) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096460.2.1 (e_value=7e-98) genomic_reference:SL2.40ch03 gene_region:52001667-52002548 transcript_region:SL2.40ch03:52001667..52002548+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 **-- LOXH1_MOUSE); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00020450g0008.1 protein AED:0.16 eAED:1.00 QI:62|0|0|1|0|0|2|220|28 NbS00026255g0005.1 protein AED:0.10 eAED:0.10 QI:915|0.72|0.5|1|1|1|12|521|1252; (*SWP) sp|O60177|YG42_SCHPO (e_value=2e-72) Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=2 SV=1;; (*TAIR) AT1G61140.3 (e_value=0.0) | Symbols: EDA16 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related | chr1:22535038-22539756 REVERSE LENGTH=1122;; (*ITAG) Solyc03g006570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1137306-1149345 transcript_region:SL2.40ch03:1137306..1149345- go_terms:GO:0005524,GO:0008270 functional_description:"DNA repair protein RAD5 (AHRD V1 *--- A8N3A4_COPC7); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524,GO:0008270 NbS00026255g0006.1 protein AED:0.37 eAED:0.40 QI:0|0|0|0.75|0|0|4|0|238; (*TAIR) AT1G11090.1 (e_value=3e-46) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3702655-3703629 FORWARD LENGTH=324;; (*ITAG) Solyc03g006560.2.1 (e_value=7e-84) genomic_reference:SL2.40ch03 gene_region:1128702-1130011 transcript_region:SL2.40ch03:1128702..1130011+ go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH)"; GO:0004622 NbS00039099g0006.1 protein AED:0.41 eAED:0.46 QI:0|0.87|0.77|1|0.87|0.77|9|0|301; (*SWP) sp|Q94AT1|P2C76_ARATH (e_value=2e-155) Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1;; (*TAIR) AT5G53140.1 (e_value=1e-156) | Symbols: | Protein phosphatase 2C family protein | chr5:21549228-21552132 FORWARD LENGTH=420;; (*ITAG) Solyc03g007270.2.1 (e_value=7e-177) genomic_reference:SL2.40ch03 gene_region:1829886-1837101 transcript_region:SL2.40ch03:1829886..1837101+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B5A9S6_HEVBR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00035555g0105.1 protein AED:0.21 eAED:0.28 QI:48|0|0|1|0|0|2|0|169 NbS00035555g0104.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.5|0|0|2|0|110 NbS00013050g0006.1 protein AED:0.16 eAED:0.16 QI:535|0.25|0.33|1|0.25|0.11|9|0|760; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=0.0) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00051366g0003.1 protein AED:0.18 eAED:0.18 QI:328|1|1|1|0.28|0.5|8|5|367; (*SWP) sp|D2WL32|GLGB3_ARATH (e_value=0.0) 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1;; (*TAIR) AT3G20440.2 (e_value=0.0) | Symbols: EMB2729, BE1 | Alpha amylase family protein | chr3:7123603-7130364 REVERSE LENGTH=899;; (*ITAG) Solyc07g064830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64039012-64053950 transcript_region:SL2.40ch07:64039012..64053950+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** C5FVR4_NANOT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00057782g0001.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|79 NbS00012956g0016.1 protein AED:0.07 eAED:0.07 QI:81|1|1|1|0.91|0.92|13|209|536; (*SWP) sp|Q55DL0|DPYS_DICDI (e_value=3e-164) Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1;; (*TAIR) AT5G12200.1 (e_value=0.0) | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-3944727 REVERSE LENGTH=531;; (*ITAG) Solyc11g064920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47316105-47325043 transcript_region:SL2.40ch11:47316105..47325043+ go_terms:GO:0004157 functional_description:"Dihydropyrimidinase (AHRD V1 **-* D7M4H1_ARALY); contains Interpro domain(s) IPR011778 D-hydantoinase "; GO:0004157 NbS00012956g0019.1 protein AED:0.16 eAED:0.18 QI:0|0.2|0|0.83|0.8|0.66|6|0|280; (*TAIR) AT5G19473.1 (e_value=5e-14) | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:6569268-6570680 FORWARD LENGTH=99;; (*ITAG) Solyc11g064930.1.1 (e_value=2e-83) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:47325976-47334491 transcript_region:SL2.40ch11:47325976..47334491- functional_description:"Unknown Protein (AHRD V1)"; NbS00042109g0015.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0.66|1|0.5|0.66|3|474|246; (*SWP) sp|P73848|FABZ_SYNY3 (e_value=1e-43) (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=fabZ PE=3 SV=2;; (*TAIR) AT5G10160.1 (e_value=8e-88) | Symbols: | Thioesterase superfamily protein | chr5:3185819-3187159 FORWARD LENGTH=219;; (*ITAG) Solyc01g105060.2.1 (e_value=2e-119) genomic_reference:SL2.40ch01 gene_region:85094784-85097712 transcript_region:SL2.40ch01:85094784..85097712- go_terms:GO:0005737 functional_description:"(3R)-hydroxymyristoyl- (AHRD V1 ***- Q9LX13_ARATH); contains Interpro domain(s) IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ "; GO:0005737 NbS00042109g0020.1 protein AED:0.16 eAED:0.16 QI:252|0.8|0.63|1|0.9|0.81|11|330|775; (*SWP) sp|Q339D2|P2C71_ORYSJ (e_value=9e-96) Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1;; (*TAIR) AT4G33500.1 (e_value=1e-80) | Symbols: | Protein phosphatase 2C family protein | chr4:16112835-16116243 REVERSE LENGTH=724;; (*ITAG) Solyc01g105020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85080428-85087099 transcript_region:SL2.40ch01:85080428..85087099- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00042109g0018.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|256; (*SWP) sp|P27524|CB4A_SOLLC (e_value=3e-163) Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1;; (*TAIR) AT1G15820.1 (e_value=1e-143) | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258;; (*ITAG) Solyc01g105030.2.1 (e_value=2e-164) genomic_reference:SL2.40ch01 gene_region:85087662-85089049 transcript_region:SL2.40ch01:85087662..85089049+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00042109g0017.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|274; (*SWP) sp|P27524|CB4A_SOLLC (e_value=2e-160) Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1;; (*TAIR) AT1G15820.1 (e_value=4e-145) | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258;; (*ITAG) Solyc01g105030.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:85087662-85089049 transcript_region:SL2.40ch01:85087662..85089049+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00033216g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.85|1|0.83|0.71|7|416|373; (*SWP) sp|Q40863|EMB8_PICGL (e_value=6e-102) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT3G50790.1 (e_value=4e-116) | Symbols: | esterase/lipase/thioesterase family protein | chr3:18880074-18881940 REVERSE LENGTH=408;; (*ITAG) Solyc08g083140.2.1 (e_value=3e-120) genomic_reference:SL2.40ch08 gene_region:62847856-62854865 transcript_region:SL2.40ch08:62847856..62854865+ go_terms:GO:0042802 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA); contains Interpro domain(s) IPR012020 AB-hydrolase YheT, putative "; GO:0042802 NbS00033216g0006.1 protein AED:0.46 eAED:0.50 QI:0|0|0.33|1|0|0.33|3|0|179; (*SWP) sp|Q40863|EMB8_PICGL (e_value=4e-39) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT3G50790.1 (e_value=4e-60) | Symbols: | esterase/lipase/thioesterase family protein | chr3:18880074-18881940 REVERSE LENGTH=408;; (*ITAG) Solyc08g083140.2.1 (e_value=3e-76) genomic_reference:SL2.40ch08 gene_region:62847856-62854865 transcript_region:SL2.40ch08:62847856..62854865+ go_terms:GO:0042802 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA); contains Interpro domain(s) IPR012020 AB-hydrolase YheT, putative "; GO:0042802 NbS00032630g0001.1 protein AED:0.44 eAED:0.44 QI:31|0.5|0.33|1|1|1|3|0|71 NbS00061617g0002.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|69; (*SWP) sp|P46302|RS28_MAIZE (e_value=1e-32) 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1;; (*TAIR) AT5G64140.1 (e_value=5e-33) | Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64;; (*ITAG) Solyc10g078630.1.1 (e_value=1e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbS00025185g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|0.83|1|0.8|0.83|6|0|368; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-58) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G66710.1 (e_value=8e-123) | Symbols: | Protein kinase superfamily protein | chr5:26636609-26638564 FORWARD LENGTH=405;; (*ITAG) Solyc02g085620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43021184-43027761 transcript_region:SL2.40ch02:43021184..43027761- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 **** B6T8S1_MAIZE); contains Interpro domain(s) IPR015784 Tyrosine-protein kinase, ATN1-like "; GO:0004712 NbS00025185g0003.1 protein AED:0.30 eAED:0.30 QI:68|1|1|1|0.8|0.72|11|756|230; (*SWP) sp|P42774|GBF1_ARATH (e_value=1e-45) G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2;; (*TAIR) AT4G36730.1 (e_value=8e-47) | Symbols: GBF1 | G-box binding factor 1 | chr4:17309850-17311752 REVERSE LENGTH=315;; (*ITAG) Solyc02g062950.2.1 (e_value=2e-88) genomic_reference:SL2.40ch02 gene_region:29468111-29477847 transcript_region:SL2.40ch02:29468111..29477847- go_terms:GO:0005515,GO:0043565 functional_description:"G-box binding factor (AHRD V1 **** Q43449_SOYBN); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0005515,GO:0043565 NbS00025185g0014.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|512; (*SWP) sp|O23210|SCL15_ARATH (e_value=3e-125) Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=3;; (*TAIR) AT4G36710.1 (e_value=2e-126) | Symbols: | GRAS family transcription factor | chr4:17306060-17307520 FORWARD LENGTH=486;; (*ITAG) Solyc02g085600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:43007859-43009469 transcript_region:SL2.40ch02:43007859..43009469+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HET8_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00000696g0014.1 protein AED:0.20 eAED:0.20 QI:188|1|1|1|1|1|16|311|549; (*SWP) sp|Q8VZC3|AL121_ARATH (e_value=0.0) Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1;; (*TAIR) AT5G62530.1 (e_value=0.0) | Symbols: ALDH12A1, ATP5CDH, P5CDH | aldehyde dehydrogenase 12A1 | chr5:25099768-25103159 REVERSE LENGTH=556;; (*ITAG) Solyc06g071000.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40003245-40009711 transcript_region:SL2.40ch06:40003245..40009711+ go_terms:GO:0050897,GO:0008270 functional_description:"N-succinylglutamate 5-semialdehyde dehydrogenase (AHRD V1 *-*- ASTD_VIBCH); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0050897,GO:0008270 NbS00000696g0022.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|0.66|0.5|4|0|434; (*SWP) sp|P15722|PLY59_SOLLC (e_value=0.0) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=0.0) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc06g071020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40014723-40016742 transcript_region:SL2.40ch06:40014723..40016742+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** B6TSP4_MAIZE); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00000696g0021.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0.33|1|0|0.33|3|0|400; (*TAIR) AT1G18850.1 (e_value=2e-112) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6504928-6506127 REVERSE LENGTH=399;; (*ITAG) Solyc06g071010.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40010456-40014163 transcript_region:SL2.40ch06:40010456..40014163+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000696g0018.1 protein AED:0.13 eAED:0.13 QI:201|1|0.5|1|1|1|2|0|116; (*SWP) sp|Q9ZPC0|ICS_CATRO (e_value=4e-21) Isochorismate synthase, chloroplastic OS=Catharanthus roseus PE=1 SV=1;; (*TAIR) AT1G18870.1 (e_value=2e-19) | Symbols: ICS2, ATICS2 | isochorismate synthase 2 | chr1:6515486-6519176 FORWARD LENGTH=562;; (*ITAG) Solyc06g071030.2.1 (e_value=1e-41) genomic_reference:SL2.40ch06 gene_region:40017435-40026369 transcript_region:SL2.40ch06:40017435..40026369- go_terms:GO:0008909 functional_description:"Isochorismate synthase (AHRD V1 **** B0CN79_SOLLC); contains Interpro domain(s) IPR005801 ADC synthase IPR004561 Isochorismate synthase "; GO:0008909 NbS00000696g0019.1 protein AED:0.25 eAED:0.25 QI:240|0.84|0.78|1|0.92|0.92|14|0|814; (*SWP) sp|P0CB49|YLPM1_RAT (e_value=8e-58) YLP motif-containing protein 1 OS=Rattus norvegicus GN=Ylpm1 PE=1 SV=1;; (*TAIR) AT5G62760.4 (e_value=2e-150) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25204730-25209393 REVERSE LENGTH=640;; (*ITAG) Solyc06g071040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40025934-40042581 transcript_region:SL2.40ch06:40025934..40042581- functional_description:"YLP motif containing 1 (AHRD V1 *-*- D7FYE7_ECTSI)"; NbS00000696g0023.1 protein AED:0.28 eAED:0.32 QI:0|0.92|0.85|1|0.92|0.85|14|0|498; (*SWP) sp|Q9ZPC0|ICS_CATRO (e_value=0.0) Isochorismate synthase, chloroplastic OS=Catharanthus roseus PE=1 SV=1;; (*TAIR) AT1G18870.2 (e_value=1e-177) | Symbols: ICS2 | isochorismate synthase 2 | chr1:6515746-6519176 FORWARD LENGTH=512;; (*ITAG) Solyc06g071030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40017435-40026369 transcript_region:SL2.40ch06:40017435..40026369- go_terms:GO:0008909 functional_description:"Isochorismate synthase (AHRD V1 **** B0CN79_SOLLC); contains Interpro domain(s) IPR005801 ADC synthase IPR004561 Isochorismate synthase "; GO:0008909 NbS00000696g0108.1 protein AED:0.10 eAED:0.10 QI:170|0.75|0.77|1|0.12|0.11|9|3898|148 NbS00000696g0109.1 protein AED:0.22 eAED:0.22 QI:35|1|1|1|0.75|0.8|5|501|291 NbS00049043g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|188; (*SWP) sp|Q93XW5|NSP5_ARATH (e_value=3e-71) Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1;; (*TAIR) AT3G07720.1 (e_value=1e-94) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329;; (*ITAG) Solyc05g024410.2.1 (e_value=3e-124) genomic_reference:SL2.40ch05 gene_region:31650811-31654017 transcript_region:SL2.40ch05:31650811..31654017+ functional_description:"Kelch-like protein 9 (AHRD V1 ***- KLHL9_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00013513g0004.1 protein AED:0.10 eAED:0.10 QI:75|1|1|1|0.66|0.5|4|435|228; (*TAIR) AT4G32605.1 (e_value=3e-70) | Symbols: | Mitochondrial glycoprotein family protein | chr4:15726429-15727864 REVERSE LENGTH=227;; (*ITAG) Solyc11g006400.1.1 (e_value=1e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1102223-1106554 transcript_region:SL2.40ch11:1102223..1106554+ go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein (AHRD V1 ***- B6TJH8_MAIZE); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00029358g0005.1 protein AED:0.10 eAED:0.11 QI:0|0.42|0.25|0.87|0.71|0.5|8|0|730; (*SWP) sp|Q84YJ9|HAK26_ORYSJ (e_value=0.0) Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1;; (*TAIR) AT4G13420.1 (e_value=6e-164) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc06g051830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:31997988-32001566 transcript_region:SL2.40ch06:31997988..32001566- go_terms:GO:0009674 functional_description:"Potassium transporter 17 (AHRD V1 **** B6T8T1_MAIZE); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00014088g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|156; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=5e-30) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT2G37430.1 (e_value=4e-31) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr2:15706454-15706990 FORWARD LENGTH=178;; (*ITAG) Solyc11g073060.1.1 (e_value=3e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53255537-53256001 transcript_region:SL2.40ch11:53255537..53256001- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00014088g0010.1 protein AED:0.33 eAED:0.33 QI:292|0.5|0.42|1|0.33|0.42|7|363|407; (*TAIR) AT4G32440.1 (e_value=3e-48) | Symbols: | Plant Tudor-like RNA-binding protein | chr4:15657295-15658692 FORWARD LENGTH=377;; (*ITAG) Solyc11g007340.1.1 (e_value=6e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1716337-1718630 transcript_region:SL2.40ch11:1716337..1718630+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; GO:0003723 NbS00028677g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|237 NbS00031050g0015.1 protein AED:0.21 eAED:0.21 QI:63|0.62|0.66|1|0.75|0.88|9|275|354; (*SWP) sp|P46248|AAT5_ARATH (e_value=4e-138) Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2;; (*TAIR) AT4G31990.2 (e_value=3e-139) | Symbols: ASP5, AAT3, ATAAT1 | aspartate aminotransferase 5 | chr4:15471074-15473521 REVERSE LENGTH=453;; (*ITAG) Solyc08g041870.2.1 (e_value=4e-149) genomic_reference:SL2.40ch08 gene_region:27494734-27500528 transcript_region:SL2.40ch08:27494734..27500528- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** Q2XTE6_SOLTU); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00031050g0014.1 protein AED:0.37 eAED:0.37 QI:0|1|0.85|1|0.83|0.85|7|0|254; (*SWP) sp|Q0V7T5|Y1864_ARATH (e_value=2e-108) Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1;; (*TAIR) AT4G32000.1 (e_value=5e-135) | Symbols: | Protein kinase superfamily protein | chr4:15474083-15476655 REVERSE LENGTH=418;; (*ITAG) Solyc04g045600.2.1 (e_value=6e-144) genomic_reference:SL2.40ch04 gene_region:33412352-33414560 transcript_region:SL2.40ch04:33412352..33414560- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00017414g0008.1 protein AED:0.13 eAED:0.16 QI:0|0|0|1|0|0.5|2|0|242; (*SWP) sp|Q9LVP0|Y5639_ARATH (e_value=2e-25) Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1;; (*TAIR) AT1G73066.1 (e_value=1e-27) | Symbols: | Leucine-rich repeat family protein | chr1:27481785-27483581 FORWARD LENGTH=598;; (*ITAG) Solyc03g082470.2.1 (e_value=2e-116) genomic_reference:SL2.40ch03 gene_region:45939634-45943468 transcript_region:SL2.40ch03:45939634..45943468+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00017414g0005.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|0|0|2|0|487; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=6e-66) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G42090.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:16826830-16828149 FORWARD LENGTH=439;; (*ITAG) Solyc03g082440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:45927948-45929270 transcript_region:SL2.40ch03:45927948..45929270- go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00040345g0004.1 protein AED:0.23 eAED:0.27 QI:0|0.5|0.36|0.90|0.3|0.54|11|0|321; (*SWP) sp|O23969|SF21_HELAN (e_value=3e-106) Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1;; (*TAIR) AT5G56750.1 (e_value=1e-133) | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:22957986-22960606 FORWARD LENGTH=346;; (*ITAG) Solyc07g021700.2.1 (e_value=4e-152) genomic_reference:SL2.40ch07 gene_region:21207606-21210896 transcript_region:SL2.40ch07:21207606..21210896+ go_terms:GO:0005515 functional_description:"N-myc downstream regulated (Fragment) (AHRD V1 **-- Q177C7_AEDAE); contains Interpro domain(s) IPR015511 Pollen specific protein SF21 "; GO:0005515 NbS00042978g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|82; (*ITAG) Solyc00g027140.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12390165-12393585 transcript_region:SL2.40ch00:12390165..12393585- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00042978g0001.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.25|1|1|4|246|78 NbS00042978g0007.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|205 NbS00010159g0005.1 protein AED:0.03 eAED:0.03 QI:331|1|0.88|1|0.75|0.66|9|307|1809; (*TAIR) AT1G24460.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). | chr1:8666072-8672338 FORWARD LENGTH=1807;; (*ITAG) Solyc05g014200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7965137-7975357 transcript_region:SL2.40ch05:7965137..7975357- functional_description:"Myosin-like protein (AHRD V1 *-*- Q6K5K0_ORYSJ)"; NbS00010159g0008.1 protein AED:0.30 eAED:0.32 QI:0|0.62|0.66|1|0.5|0.55|9|230|378; (*TAIR) AT3G26085.1 (e_value=6e-83) | Symbols: | CAAX amino terminal protease family protein | chr3:9530842-9532397 FORWARD LENGTH=293;; (*ITAG) Solyc05g014190.2.1 (e_value=3e-111) genomic_reference:SL2.40ch05 gene_region:7962697-7964761 transcript_region:SL2.40ch05:7962697..7964761+ go_terms:GO:0016020 functional_description:"CAAX amino terminal protease family protein (AHRD V1 **-- D7LQY7_ARALY); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00019766g0003.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|70 NbS00037870g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|857; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=0.0) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc10g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2108916-2114253 transcript_region:SL2.40ch10:2108916..2114253- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00037870g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|113; (*SWP) sp|P41099|RLA2_PARAR (e_value=4e-27) 60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1;; (*TAIR) AT2G27710.4 (e_value=3e-24) | Symbols: | 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98;; (*ITAG) Solyc06g074430.2.1 (e_value=9e-30) genomic_reference:SL2.40ch06 gene_region:42457712-42460408 transcript_region:SL2.40ch06:42457712..42460408+ go_terms:GO:0003735 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 ***- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0003735 NbS00001701g0009.1 protein AED:0.02 eAED:0.04 QI:36|0.66|0|1|0.33|0.25|4|0|953; (*TAIR) AT4G28760.2 (e_value=6e-161) | Symbols: | Protein of unknown function (DUF3741) | chr4:14208640-14211811 FORWARD LENGTH=924;; (*ITAG) Solyc06g083660.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45288739-45294285 transcript_region:SL2.40ch06:45288739..45294285- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6B6 (AHRD V1 ***- Q9LKC1_ARATH)"; GO:0005515 NbS00001701g0013.1 protein AED:0.21 eAED:0.27 QI:165|0.5|0.57|1|0.33|0.42|7|0|612; (*ITAG) Solyc06g083670.2.1 (e_value=6e-177) genomic_reference:SL2.40ch06 gene_region:45302665-45305622 transcript_region:SL2.40ch06:45302665..45305622- functional_description:"Unknown Protein (AHRD V1)"; NbS00001701g0012.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|0|0.33|3|0|199; (*ITAG) Solyc01g111480.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00001701g0106.1 protein AED:0.22 eAED:0.27 QI:0|0.33|0.28|1|0.83|0.71|7|0|544 NbS00003586g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|924; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=3e-113) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT5G27060.1 (e_value=2e-153) | Symbols: AtRLP53, RLP53 | receptor like protein 53 | chr5:9522534-9525407 REVERSE LENGTH=957;; (*ITAG) Solyc12g100030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65271557-65274358 transcript_region:SL2.40ch12:65271557..65274358+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00003586g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0.33|1|0|0|3|502|773; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=6e-128) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT1G35710.1 (e_value=4e-129) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120;; (*ITAG) Solyc06g008270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2139308-2142190 transcript_region:SL2.40ch06:2139308..2142190- go_terms:GO:0019903 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903 NbS00019199g0001.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|1|1|2|0|186; (*SWP) sp|Q0DJV6|CML18_ORYSJ (e_value=9e-51) Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica GN=CML18 PE=2 SV=1;; (*TAIR) AT1G66400.1 (e_value=2e-49) | Symbols: CML23 | calmodulin like 23 | chr1:24770856-24771329 REVERSE LENGTH=157;; (*ITAG) Solyc02g091500.1.1 (e_value=6e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47358016-47358486 transcript_region:SL2.40ch02:47358016..47358486+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6TGU5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006022g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|172; (*TAIR) AT3G07470.1 (e_value=1e-52) | Symbols: | Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169;; (*ITAG) Solyc03g078160.2.1 (e_value=2e-87) genomic_reference:SL2.40ch03 gene_region:43694457-43696161 transcript_region:SL2.40ch03:43694457..43696161+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00006022g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|78; (*SWP) sp|P25804|CYSP_PEA (e_value=4e-16) Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G54940.2 (e_value=4e-25) | Symbols: | Papain family cysteine protease | chr3:20354402-20356127 FORWARD LENGTH=367;; (*ITAG) Solyc11g008260.1.1 (e_value=5e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2487182-2489778 transcript_region:SL2.40ch11:2487182..2489778+ go_terms:GO:0006508,GO:0008234 functional_description:"Cysteine proteinase cathepsin F (AHRD V1 **-- D3TN89_GLOMM); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00004565g0111.1 protein AED:0.17 eAED:0.17 QI:199|1|0.8|1|0.75|0.6|5|289|378 NbS00009837g0005.1 protein AED:0.16 eAED:0.16 QI:0|0.44|0.4|1|0.66|0.8|10|334|406; (*SWP) sp|P23980|PMA2_SOLLC (e_value=7e-134) Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1;; (*TAIR) AT5G62670.1 (e_value=1e-131) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc08g078200.1.1 (e_value=2e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59200562-59206266 transcript_region:SL2.40ch08:59200562..59206266+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00009837g0008.1 protein AED:0.28 eAED:0.37 QI:0|0.2|0.33|0.83|0.4|0.5|6|0|188; (*SWP) sp|Q9LY32|PMA7_ARATH (e_value=9e-40) ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1;; (*TAIR) AT3G60330.2 (e_value=7e-41) | Symbols: HA7 | H(+)-ATPase 7 | chr3:22298763-22303509 FORWARD LENGTH=961;; (*ITAG) Solyc08g078200.1.1 (e_value=9e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59200562-59206266 transcript_region:SL2.40ch08:59200562..59206266+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00003639g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|160; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=2e-26) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT2G17880.1 (e_value=1e-29) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160;; (*ITAG) Solyc04g081530.1.1 (e_value=1e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63070273-63070740 transcript_region:SL2.40ch04:63070273..63070740+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SUM8_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00003639g0009.1 protein AED:0.25 eAED:0.26 QI:0|0.90|0.83|1|0.90|0.91|12|0|623; (*TAIR) AT1G30755.1 (e_value=2e-163) | Symbols: | Protein of unknown function (DUF668) | chr1:10905991-10908773 REVERSE LENGTH=615;; (*ITAG) Solyc04g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63055757-63062387 transcript_region:SL2.40ch04:63055757..63062387+ go_terms:GO:0016020 functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; GO:0016020 NbS00003639g0007.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|170; (*ITAG) Solyc12g038100.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:34157356-34158093 transcript_region:SL2.40ch12:34157356..34158093+ functional_description:"Polyprotein (AHRD V1 *-*- Q94HW2_ARATH)"; NbS00062091g0003.1 protein AED:0.05 eAED:0.05 QI:130|0.75|0.8|1|0.75|0.6|5|177|385; (*TAIR) AT5G38200.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc03g034320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:10344778-10348543 transcript_region:SL2.40ch03:10344778..10348543- go_terms:GO:0006541 functional_description:"Class I glutamine amidotransferase (AHRD V1 *-*- D4V3L4_BACVU); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00016153g0007.1 protein AED:0.23 eAED:0.23 QI:238|1|1|1|0.8|0.66|6|292|157; (*TAIR) AT4G14420.1 (e_value=5e-49) | Symbols: | HR-like lesion-inducing protein-related | chr4:8302171-8303738 REVERSE LENGTH=158;; (*ITAG) Solyc09g089670.2.1 (e_value=2e-63) genomic_reference:SL2.40ch09 gene_region:64784520-64787322 transcript_region:SL2.40ch09:64784520..64787322+ functional_description:"Nicotiana lesion-inducing like (AHRD V1 ***- B6T757_MAIZE); contains Interpro domain(s) IPR008637 HR-like lesion-inducer "; NbS00016153g0113.1 protein AED:0.13 eAED:0.13 QI:82|0.87|0.88|1|0.37|0.33|9|318|342 NbS00016153g0109.1 protein AED:0.15 eAED:0.16 QI:236|0.82|0.87|1|0.65|0.66|24|396|921 NbS00016153g0111.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.66|1|0.4|0.33|6|186|224 NbS00023767g0009.1 protein AED:0.01 eAED:0.01 QI:34|1|1|1|0.57|0.37|8|307|367; (*TAIR) AT3G54970.1 (e_value=1e-115) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr3:20368329-20370070 REVERSE LENGTH=353;; (*ITAG) Solyc04g049890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:43847175-43852499 transcript_region:SL2.40ch04:43847175..43852499+ go_terms:GO:0008152 functional_description:"Os02g0252600 protein (Fragment) (AHRD V1 *-*- Q0E2C2_ORYSJ); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00023767g0008.1 protein AED:0.30 eAED:0.31 QI:0|0.33|0.5|1|0.33|0.75|4|353|155; (*SWP) sp|Q60EQ4|NFYB3_ORYSJ (e_value=7e-62) Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2;; (*TAIR) AT2G38880.5 (e_value=4e-63) | Symbols: NF-YB1 | nuclear factor Y, subunit B1 | chr2:16238685-16240316 FORWARD LENGTH=141;; (*ITAG) Solyc04g049910.2.1 (e_value=6e-83) genomic_reference:SL2.40ch04 gene_region:43871375-43875010 transcript_region:SL2.40ch04:43871375..43875010+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6UBN3_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00059881g0003.1 protein AED:0.30 eAED:0.32 QI:429|0|0.33|1|0|0.33|3|0|264; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=5e-102) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=4e-103) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc10g017960.1.1 (e_value=2e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6100868-6103519 transcript_region:SL2.40ch10:6100868..6103519- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbC24191018g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|93; (*SWP) sp|O23826|K125_TOBAC (e_value=3e-50) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=1e-53) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc11g072820.1.1 (e_value=4e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53093963-53100080 transcript_region:SL2.40ch11:53093963..53100080- go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00037116g0011.1 protein AED:0.16 eAED:0.16 QI:53|0.9|0.90|1|0.8|0.72|11|418|519; (*SWP) sp|Q9FMV0|FBL91_ARATH (e_value=6e-91) F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1;; (*TAIR) AT5G63520.1 (e_value=5e-92) | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426300-25429093 REVERSE LENGTH=519;; (*ITAG) Solyc04g016130.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6856294-6869390 transcript_region:SL2.40ch04:6856294..6869390- functional_description:"F-box/LRR-repeat protein At5g63520 (AHRD V1 ***- D7MPP7_ARALY); contains Interpro domain(s) IPR019494 FIST C domain "; NbS00037116g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.87|0.70|1|0.62|0.64|17|40|1086; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT3G10310.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr3:3190208-3195005 FORWARD LENGTH=922;; (*ITAG) Solyc04g016080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6781720-6791327 transcript_region:SL2.40ch04:6781720..6791327+ go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00037116g0004.1 protein AED:0.05 eAED:0.17 QI:40|-1|0|1|-1|0|1|0|92; (*ITAG) Solyc06g060210.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00051612g0004.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|1|0.5|0.33|3|0|553; (*SWP) sp|Q93Z08|E136_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2;; (*TAIR) AT5G58090.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23505556-23507193 REVERSE LENGTH=477;; (*ITAG) Solyc08g074390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55669339-55671622 transcript_region:SL2.40ch08:55669339..55671622- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00040409g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.71|0.86|1|0.92|1|15|0|679; (*SWP) sp|Q43128|PMA10_ARATH (e_value=0.0) ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2;; (*TAIR) AT1G17260.1 (e_value=0.0) | Symbols: AHA10 | autoinhibited H(+)-ATPase isoform 10 | chr1:5904058-5908898 FORWARD LENGTH=947;; (*ITAG) Solyc07g017780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00040409g0011.1 protein AED:0.23 eAED:0.24 QI:209|0.91|0.92|1|0.75|0.84|13|278|543; (*SWP) sp|Q9UUH0|YKIC_SCHPO (e_value=1e-34) Uncharacterized protein C630.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC630.12 PE=2 SV=1;; (*TAIR) AT1G53710.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:20053339-20056271 REVERSE LENGTH=528;; (*ITAG) Solyc12g055740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47085573-47090460 transcript_region:SL2.40ch12:47085573..47090460- go_terms:GO:0016787 functional_description:"Serine/threonine phosphatase-like protein (Fragment) (AHRD V1 *--- B2ZLM8_HELPE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00040409g0007.1 protein AED:0.07 eAED:0.07 QI:0|1|0.4|1|1|1|5|0|531; (*TAIR) AT3G14360.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:4791596-4793534 FORWARD LENGTH=518;; (*ITAG) Solyc03g123750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64550025-64553196 transcript_region:SL2.40ch03:64550025..64553196+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00018817g0003.1 protein AED:0.08 eAED:0.10 QI:461|1|0.33|1|1|1|3|0|302; (*SWP) sp|Q02283|HAT5_ARATH (e_value=3e-39) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=2e-40) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc03g113270.2.1 (e_value=2e-90) genomic_reference:SL2.40ch03 gene_region:57510884-57513100 transcript_region:SL2.40ch03:57510884..57513100+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0005634,GO:0006355,GO:0045449 NbS00018370g0002.1 protein AED:0.13 eAED:0.18 QI:49|0|0|1|0|0|2|0|237; (*ITAG) Solyc01g065740.2.1 (e_value=2e-63) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00050091g0004.1 protein AED:0.11 eAED:0.11 QI:348|1|0.5|1|0|0|2|0|194; (*TAIR) AT3G06040.3 (e_value=1e-46) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr3:1824516-1825076 REVERSE LENGTH=186;; (*ITAG) Solyc09g010030.1.1 (e_value=1e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3451744-3452328 transcript_region:SL2.40ch09:3451744..3452328+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 *-*- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00050091g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.95|0.91|1|0.90|0.91|23|0|1090; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc09g010060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00050091g0005.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|5|0|398; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=5e-96) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=4e-97) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc09g010070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3468712-3470580 transcript_region:SL2.40ch09:3468712..3470580+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M889_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010572g0003.1 protein AED:0.36 eAED:0.38 QI:0|0|0.5|1|1|1|2|617|166; (*SWP) sp|O80813|YC20L_ARATH (e_value=2e-30) Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2;; (*TAIR) AT3G56830.1 (e_value=4e-49) | Symbols: | Protein of unknown function (DUF565) | chr3:21042755-21043840 REVERSE LENGTH=230;; (*ITAG) Solyc10g085930.1.1 (e_value=5e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64266373-64268978 transcript_region:SL2.40ch10:64266373..64268978- functional_description:"Ycf20-like protein (AHRD V1 *-*- YC20L_ARATH); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00010572g0004.1 protein AED:0.14 eAED:0.14 QI:93|1|1|1|0|0|3|162|94; (*SWP) sp|Q02214|ITR1_NICSY (e_value=4e-53) Trypsin inhibitor 1 OS=Nicotiana sylvestris PE=2 SV=1;; (*ITAG) Solyc10g086090.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64370595-64371203 transcript_region:SL2.40ch10:64370595..64371203- go_terms:GO:0009611 functional_description:"Proteinase inhibitor I (AHRD V1 ***- Q53X28_SOLTU); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00059520g0004.1 protein AED:0.08 eAED:0.08 QI:72|1|0.5|1|0|0.5|2|0|235; (*SWP) sp|Q9LT10|CXE18_ARATH (e_value=3e-69) Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=2 SV=1;; (*TAIR) AT5G23530.1 (e_value=2e-70) | Symbols: AtCXE18, CXE18 | carboxyesterase 18 | chr5:7933366-7934373 REVERSE LENGTH=335;; (*ITAG) Solyc10g054780.1.1 (e_value=2e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51415394-51418771 transcript_region:SL2.40ch10:51415394..51418771- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 **-- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00060511g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|83; (*TAIR) AT1G04590.1 (e_value=2e-22) | Symbols: | BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:1258760-1261411 REVERSE LENGTH=381;; (*ITAG) Solyc04g056370.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:53301563-53306177 transcript_region:SL2.40ch04:53301563..53306177- functional_description:"Pentatricopeptide repeat-containing protein At4g21190 (AHRD V1 *-*- PP332_ARATH)"; NbS00002167g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.4|0.8|0.5|0.6|5|0|369; (*TAIR) AT1G78710.2 (e_value=2e-86) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 42 | chr1:29601499-29604557 FORWARD LENGTH=299;; (*ITAG) Solyc01g068440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70080119-70083873 transcript_region:SL2.40ch01:70080119..70083873+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002167g0008.1 protein AED:0.27 eAED:0.27 QI:0|1|0.6|1|0.5|0.4|5|0|353; (*TAIR) AT1G29050.1 (e_value=2e-132) | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38 | chr1:10136376-10139082 REVERSE LENGTH=380;; (*ITAG) Solyc01g068430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:70069743-70072957 transcript_region:SL2.40ch01:70069743..70072957+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00002167g0009.1 protein AED:0.33 eAED:0.38 QI:46|0.66|0.5|1|0.33|0|4|0|235; (*TAIR) AT3G14850.1 (e_value=3e-70) | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41 | chr3:4996592-4997611 FORWARD LENGTH=253;; (*ITAG) Solyc01g068420.2.1 (e_value=1e-128) genomic_reference:SL2.40ch01 gene_region:70063083-70065604 transcript_region:SL2.40ch01:70063083..70065604+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00021908g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.73|1|0.85|0.8|15|307|915; (*SWP) sp|O22224|Y2162_ARATH (e_value=0.0) Uncharacterized protein At2g41620 OS=Arabidopsis thaliana GN=At2g41620 PE=2 SV=2;; (*TAIR) AT2G41620.1 (e_value=0.0) | Symbols: | Nucleoporin interacting component (Nup93/Nic96-like) family protein | chr2:17350419-17354997 REVERSE LENGTH=861;; (*ITAG) Solyc04g016240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7033018-7042931 transcript_region:SL2.40ch04:7033018..7042931- go_terms:GO:0005515 functional_description:"Nuclear pore complex protein Nup93-like protein (AHRD V1 *--- D0MQC8_PHYIN); contains Interpro domain(s) IPR007231 Nucleoporin interacting component Nup93/Nic96 "; GO:0005515 NbS00021908g0013.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.5|2|0|372; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=9e-93) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=1e-31) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc04g008310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1986217-1987629 transcript_region:SL2.40ch04:1986217..1987629- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q2VA65_SOYBN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00021908g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|342; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-106) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36770.1 (e_value=1e-19) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15415227-15416717 REVERSE LENGTH=496;; (*ITAG) Solyc04g016190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6942505-6943908 transcript_region:SL2.40ch04:6942505..6943908- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 *-** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00021908g0003.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|98; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=7e-33) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*ITAG) Solyc04g016190.1.1 (e_value=1e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6942505-6943908 transcript_region:SL2.40ch04:6942505..6943908- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 *-** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00021908g0006.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|83; (*SWP) sp|P56725|ZOX_PHAVU (e_value=1e-23) Zeatin O-xylosyltransferase OS=Phaseolus vulgaris GN=ZOX1 PE=2 SV=1;; (*ITAG) Solyc04g016230.2.1 (e_value=3e-40) genomic_reference:SL2.40ch04 gene_region:7013160-7015136 transcript_region:SL2.40ch04:7013160..7015136- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00021908g0009.1 protein AED:0.24 eAED:0.27 QI:0|0.33|0.25|1|0.33|0.25|4|393|107; (*TAIR) AT3G20930.1 (e_value=8e-17) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7331739-7333749 FORWARD LENGTH=374;; (*ITAG) Solyc11g007160.1.1 (e_value=4e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1598359-1601773 transcript_region:SL2.40ch11:1598359..1601773+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- B6TNV4_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00043684g0011.1 protein AED:0.18 eAED:0.18 QI:0|0.2|0.16|0.83|0.6|0.16|6|0|580; (*SWP) sp|Q9LE59|GAUT1_ARATH (e_value=0.0) Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1;; (*TAIR) AT3G61130.1 (e_value=0.0) | Symbols: GAUT1, LGT1 | galacturonosyltransferase 1 | chr3:22622399-22625514 FORWARD LENGTH=673;; (*ITAG) Solyc01g093970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77312543-77315441 transcript_region:SL2.40ch01:77312543..77315441+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9IC41_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00043684g0010.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|0|1|2|0|75; (*SWP) sp|O64644|SAP18_ARATH (e_value=2e-16) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=1e-17) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=3e-20) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ go_terms:GO:0003714 functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "; GO:0003714 NbS00003259g0015.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|498; (*TAIR) AT4G23490.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF604) | chr4:12251580-12253973 REVERSE LENGTH=526;; (*ITAG) Solyc06g075560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43307387-43309098 transcript_region:SL2.40ch06:43307387..43309098- go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00003259g0009.1 protein AED:0.12 eAED:0.12 QI:249|0.75|0.8|1|1|1|5|0|396; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=1e-172) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT1G07870.1 (e_value=1e-173) | Symbols: | Protein kinase superfamily protein | chr1:2429933-2431843 REVERSE LENGTH=423;; (*ITAG) Solyc06g075550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43302632-43306373 transcript_region:SL2.40ch06:43302632..43306373+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00003259g0004.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|75 NbS00003259g0010.1 protein AED:0.73 eAED:0.73 QI:42|0|0.5|1|0|0.5|2|0|72; (*TAIR) AT3G45740.1 (e_value=1e-19) | Symbols: | hydrolase family protein / HAD-superfamily protein | chr3:16790830-16793280 FORWARD LENGTH=376;; (*ITAG) Solyc06g075540.2.1 (e_value=3e-34) genomic_reference:SL2.40ch06 gene_region:43294894-43300401 transcript_region:SL2.40ch06:43294894..43300401+ go_terms:GO:0008808 functional_description:"Phosphatidyl synthase (AHRD V1 **-* B2WIU8_PYRTR); contains Interpro domain(s) IPR006353 HAD-superfamily hydrolase, subfamily IIA, CECR5 "; GO:0008808 NbS00003259g0011.1 protein AED:0.46 eAED:0.52 QI:0|0|0|1|0|0|2|0|25 NbS00003259g0109.1 protein AED:0.13 eAED:0.13 QI:308|0.88|0.9|1|0.66|0.7|10|363|453 NbS00003259g0116.1 protein AED:0.17 eAED:0.17 QI:203|1|1|1|1|1|2|356|296 NbS00003259g0120.1 protein AED:0.28 eAED:0.30 QI:0|0.88|0.88|1|0.82|0.83|18|411|778 NbS00028792g0001.1 protein AED:0.00 eAED:0.00 QI:291|-1|0|1|-1|1|1|0|132; (*TAIR) AT2G32030.1 (e_value=2e-47) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc09g082240.2.1 (e_value=3e-71) genomic_reference:SL2.40ch09 gene_region:63446343-63448369 transcript_region:SL2.40ch09:63446343..63448369+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 *-** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00028792g0005.1 protein AED:0.06 eAED:0.06 QI:236|0|1|1|1|1|2|273|146; (*SWP) sp|Q9ZQI8|NLTL2_ARATH (e_value=3e-14) Non-specific lipid-transfer protein-like protein At2g13820 OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1;; (*TAIR) AT3G22600.1 (e_value=2e-36) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g082270.2.1 (e_value=7e-68) genomic_reference:SL2.40ch09 gene_region:63453742-63455274 transcript_region:SL2.40ch09:63453742..63455274- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9SFJ1_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00009478g0006.1 protein AED:0.41 eAED:0.41 QI:0|1|0.66|1|1|1|3|0|106; (*SWP) sp|P46301|RS25_SOLLC (e_value=5e-48) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1;; (*TAIR) AT4G39200.2 (e_value=4e-43) | Symbols: | Ribosomal protein S25 family protein | chr4:18257464-18258464 FORWARD LENGTH=107;; (*ITAG) Solyc10g052660.1.1 (e_value=3e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48687984-48689698 transcript_region:SL2.40ch10:48687984..48689698- go_terms:GO:0003735 functional_description:"40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE); contains Interpro domain(s) IPR004977 Ribosomal protein S25 "; GO:0003735 NbS00009478g0007.1 protein AED:0.39 eAED:0.46 QI:0|0|0|1|1|1|3|0|282; (*ITAG) Solyc01g109780.2.1 (e_value=6e-87) genomic_reference:SL2.40ch01 gene_region:88393338-88396861 transcript_region:SL2.40ch01:88393338..88396861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009478g0118.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|193 NbS00009478g0119.1 protein AED:0.08 eAED:0.08 QI:202|1|1|1|1|1|5|397|308 NbS00009478g0124.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|0.5|0.33|3|233|88 NbS00009478g0120.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|307|151 NbS00009478g0121.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|174 NbS00024424g0008.1 protein AED:0.18 eAED:0.18 QI:174|1|1|1|0.66|1|4|417|216; (*SWP) sp|Q90515|TMEDA_TAKRU (e_value=4e-32) Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1;; (*TAIR) AT1G09580.1 (e_value=2e-95) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc10g045640.1.1 (e_value=7e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30428760-30438125 transcript_region:SL2.40ch10:30428760..30438125- go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbS00024424g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|4|0|302; (*TAIR) AT1G60360.1 (e_value=2e-21) | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731 REVERSE LENGTH=327;; (*ITAG) Solyc01g104260.2.1 (e_value=9e-85) genomic_reference:SL2.40ch01 gene_region:84457894-84459005 transcript_region:SL2.40ch01:84457894..84459005- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00052710g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|355; (*TAIR) AT4G20170.1 (e_value=1e-130) | Symbols: | Domain of unknown function (DUF23) | chr4:10896810-10898794 FORWARD LENGTH=504;; (*ITAG) Solyc10g005200.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:162297-165395 transcript_region:SL2.40ch10:162297..165395- functional_description:"Novel protein (AHRD V1 *-*- B8JM89_DANRE); contains Interpro domain(s) IPR008166 Protein of unknown function DUF23 "; NbC25954452g0001.1 protein AED:0.00 eAED:0.00 QI:37|-1|0|1|-1|1|1|0|502; (*SWP) sp|Q2V6J9|UFOG7_FRAAN (e_value=1e-108) UDP-glucose flavonoid 3-O-glucosyltransferase 7 OS=Fragaria ananassa GN=GT7 PE=1 SV=1;; (*TAIR) AT2G15490.3 (e_value=2e-109) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=481;; (*ITAG) Solyc08g077080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58177444-58178889 transcript_region:SL2.40ch08:58177444..58178889- go_terms:GO:0080044 functional_description:"UDP-glucosyltransferase HvUGT14077 (AHRD V1 **** D3WYW3_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00010023g0006.1 protein AED:0.18 eAED:0.18 QI:167|0.77|0.9|1|1|1|10|452|296; (*SWP) sp|Q28EB4|NP1L1_XENTR (e_value=3e-41) Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1;; (*TAIR) AT2G19480.3 (e_value=2e-122) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc12g008940.1.1 (e_value=9e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2247275-2252022 transcript_region:SL2.40ch12:2247275..2252022- go_terms:GO:0005634 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0005634 NbS00010023g0007.1 protein AED:0.27 eAED:0.27 QI:404|1|0.85|1|1|1|7|299|187; (*SWP) sp|O42929|DENR_SCHPO (e_value=6e-36) Translation machinery-associated protein 22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tma22 PE=2 SV=1;; (*TAIR) AT5G11900.1 (e_value=1e-96) | Symbols: | Translation initiation factor SUI1 family protein | chr5:3834154-3836023 FORWARD LENGTH=198;; (*ITAG) Solyc12g008910.1.1 (e_value=4e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2227329-2231903 transcript_region:SL2.40ch12:2227329..2231903+ go_terms:GO:0006413 functional_description:"Density-regulated protein (AHRD V1 ***- B6SQI8_MAIZE); contains Interpro domain(s) IPR005873 Density-regulated protein DRP1 "; GO:0006413 NbS00002680g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|0|609; (*SWP) sp|Q9C9A6|PUB10_ARATH (e_value=0.0) U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1;; (*TAIR) AT1G71020.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:26790825-26793105 REVERSE LENGTH=628;; (*ITAG) Solyc05g008230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2622044-2626422 transcript_region:SL2.40ch05:2622044..2626422- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 11 (AHRD V1 **-- PUB11_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00002680g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|72|256; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=3e-42) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT2G01340.1 (e_value=4e-54) | Symbols: At17.1 | Encodes a protein whose expression is responsive to nematode infection. | chr2:164014-165068 FORWARD LENGTH=215;; (*ITAG) Solyc05g008210.2.1 (e_value=2e-97) genomic_reference:SL2.40ch05 gene_region:2600547-2603074 transcript_region:SL2.40ch05:2600547..2603074- functional_description:"Unknown Protein (AHRD V1)"; NbS00042524g0004.1 protein AED:0.00 eAED:0.00 QI:196|1|1|1|1|1|2|122|89; (*TAIR) AT1G75250.2 (e_value=3e-34) | Symbols: ATRL6, RSM3, RL6 | RAD-like 6 | chr1:28244463-28245453 REVERSE LENGTH=97;; (*ITAG) Solyc12g089190.1.1 (e_value=4e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62746778-62748217 transcript_region:SL2.40ch12:62746778..62748217- go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00020224g0001.1 protein AED:0.03 eAED:0.04 QI:296|0|0.5|1|0|0.5|2|288|87; (*TAIR) AT4G39250.1 (e_value=1e-27) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc10g080920.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61426695-61428430 transcript_region:SL2.40ch10:61426695..61428430+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 ***- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00012577g0010.1 protein AED:0.18 eAED:0.18 QI:378|0.71|0.62|1|0.42|0.62|8|83|639; (*SWP) sp|Q7TMK9|HNRPQ_MOUSE (e_value=1e-13) Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2;; (*TAIR) AT2G44710.1 (e_value=1e-24) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc10g076870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59174862-59184607 transcript_region:SL2.40ch10:59174862..59184607- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein, cytoplasmic and nuclear (AHRD V1 *--- PABP_COCIM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00012577g0011.1 protein AED:0.54 eAED:0.55 QI:0|0|0|0.75|0.33|0.5|4|0|77; (*ITAG) Solyc10g076870.1.1 (e_value=5e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59174862-59184607 transcript_region:SL2.40ch10:59174862..59184607- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein, cytoplasmic and nuclear (AHRD V1 *--- PABP_COCIM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00012577g0009.1 protein AED:0.13 eAED:0.13 QI:321|1|1|1|0.9|0.81|11|196|765; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00048795g0004.1 protein AED:0.27 eAED:0.27 QI:0|0.72|0.58|1|0.45|0.58|12|690|395; (*TAIR) AT5G53860.2 (e_value=0.0) | Symbols: emb2737 | embryo defective 2737 | chr5:21865353-21868576 FORWARD LENGTH=422;; (*ITAG) Solyc12g013890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4682111-4693552 transcript_region:SL2.40ch12:4682111..4693552+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 ***- Q9FN40_ARATH)"; NbS00037589g0012.1 protein AED:0.03 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|296; (*SWP) sp|P50160|TS2_MAIZE (e_value=5e-39) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT3G42960.1 (e_value=5e-79) | Symbols: ATA1, ASD, TA1 | TAPETUM 1 | chr3:15018735-15019656 REVERSE LENGTH=272;; (*ITAG) Solyc11g018600.1.1 (e_value=1e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8763294-8764711 transcript_region:SL2.40ch11:8763294..8764711- go_terms:GO:0008152,GO:0055114 functional_description:"3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase (AHRD V1 *-*- HCAB_ECO5E); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00037589g0011.1 protein AED:0.01 eAED:0.01 QI:105|1|1|1|1|1|3|402|597; (*SWP) sp|Q55GU0|Y9955_DICDI (e_value=3e-35) Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1;; (*TAIR) AT5G58520.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23655312-23657943 FORWARD LENGTH=604;; (*ITAG) Solyc06g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44384883-44389852 transcript_region:SL2.40ch06:44384883..44389852- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00042878g0007.1 protein AED:0.12 eAED:0.12 QI:216|0.91|0.89|1|0.83|0.84|38|549|1680; (*SWP) sp|Q0WL80|UGGG_ARATH (e_value=0.0) UDP-glucose:glycoprotein glucosyltransferase OS=Arabidopsis thaliana GN=UGGT PE=1 SV=1;; (*TAIR) AT1G71220.1 (e_value=0.0) | Symbols: EBS1, UGGT, PSL2 | UDP-glucose:glycoprotein glucosyltransferases;transferases, transferring hexosyl groups;transferases, transferring glycosyl groups | chr1:26841664-26851730 FORWARD LENGTH=1613;; (*ITAG) Solyc01g104040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84263681-84287075 transcript_region:SL2.40ch01:84263681..84287075- go_terms:GO:0003980,GO:0051082 functional_description:"UDP-glucose glycoprotein glucosyltransferase (AHRD V1 **** D7KYS8_ARALY); contains Interpro domain(s) IPR009448 UDP-glucose:Glycoprotein Glucosyltransferase "; GO:0003980,GO:0051082 NbS00010425g0001.1 protein AED:0.33 eAED:0.33 QI:0|0.76|0.72|0.94|1|1|18|258|554; (*SWP) sp|Q43621|GSHRC_PEA (e_value=0.0) Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G24170.3 (e_value=0.0) | Symbols: ATGR1, GR1 | glutathione-disulfide reductase | chr3:8729762-8734115 REVERSE LENGTH=499;; (*ITAG) Solyc09g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66389831-66399718 transcript_region:SL2.40ch09:66389831..66399718- go_terms:GO:0004362 functional_description:"Glutathione-disulfide reductase (AHRD V1 **** Q1D9Y5_MYXXD); contains Interpro domain(s) IPR006324 Glutathione reductase, plant "; GO:0004362 NbS00010425g0011.1 protein AED:0.16 eAED:0.16 QI:154|0.9|0.81|1|0.9|0.81|11|703|361; (*TAIR) AT3G24160.1 (e_value=2e-76) | Symbols: PMP | putative type 1 membrane protein | chr3:8726241-8729023 FORWARD LENGTH=364;; (*ITAG) Solyc09g091820.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66379415-66385414 transcript_region:SL2.40ch09:66379415..66385414+ functional_description:"AT3g24160/MUJ8_16 (AHRD V1 ***- Q9ZSJ7_ARATH)"; NbS00010425g0009.1 protein AED:0.19 eAED:0.19 QI:135|0.71|0.75|1|1|1|8|0|426; (*TAIR) AT4G13670.1 (e_value=2e-84) | Symbols: PTAC5 | plastid transcriptionally active 5 | chr4:7948644-7950779 FORWARD LENGTH=387;; (*ITAG) Solyc09g091830.2.1 (e_value=5e-161) genomic_reference:SL2.40ch09 gene_region:66386226-66389639 transcript_region:SL2.40ch09:66386226..66389639+ go_terms:GO:0008152,GO:0006457 functional_description:"Peptidoglycan binding domain containing protein (AHRD V1 *-*- B6SSP4_MAIZE); contains Interpro domain(s) IPR002477 Peptidoglycan binding-like "; GO:0008152,GO:0006457 NbS00049950g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|265; (*SWP) sp|O75554|WBP4_HUMAN (e_value=4e-11) WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1;; (*TAIR) AT1G49590.1 (e_value=6e-67) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:18354997-18356409 FORWARD LENGTH=242;; (*ITAG) Solyc01g108430.2.1 (e_value=5e-146) genomic_reference:SL2.40ch01 gene_region:87522332-87526461 transcript_region:SL2.40ch01:87522332..87526461+ go_terms:GO:0005634,GO:0008270 functional_description:"WW domain-binding protein 4 (AHRD V1 *-*- C1C256_9MAXI); contains Interpro domain(s) IPR013085 Zinc finger, U1-C type "; GO:0005634,GO:0008270 NbS00024194g0106.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|245|285 NbS00024194g0201.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|183 NbS00029423g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.5|1|1|1|6|155|464; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=0.0) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.2 (e_value=2e-69) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101210.2.1 (e_value=3e-147) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00030292g0003.1 protein AED:0.24 eAED:0.24 QI:0|1|0.75|1|1|1|4|0|801; (*TAIR) AT4G35240.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:16761334-16764324 REVERSE LENGTH=865;; (*ITAG) Solyc10g074470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57327353-57331826 transcript_region:SL2.40ch10:57327353..57331826- functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00035400g0002.1 protein AED:0.56 eAED:0.57 QI:0|0.25|0|0.4|1|1|5|0|230; (*TAIR) AT3G03070.1 (e_value=1e-14) | Symbols: | NADH-ubiquinone oxidoreductase-related | chr3:696593-698069 REVERSE LENGTH=110; NbS00040726g0004.1 protein AED:0.32 eAED:0.36 QI:0|0.4|0.18|0.72|0.5|0.45|11|0|540; (*SWP) sp|O80568|ITPK4_ARATH (e_value=4e-97) Inositol-tetrakisphosphate 1-kinase 4 OS=Arabidopsis thaliana GN=ITPK4 PE=2 SV=2;; (*TAIR) AT2G43980.1 (e_value=3e-98) | Symbols: AtITPK4, ITPK4 | inositol 1,3,4-trisphosphate 5/6-kinase 4 | chr2:18208437-18211604 REVERSE LENGTH=488;; (*ITAG) Solyc08g015630.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4790829-4799083 transcript_region:SL2.40ch08:4790829..4799083+ go_terms:GO:0005622 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 ***- B6TJ44_MAIZE); contains Interpro domain(s) IPR008656 Inositol 1, 3, 4-trisphosphate 56-kinase "; GO:0005622 NbS00027220g0003.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|472; (*SWP) sp|Q9ZQE5|PP153_ARATH (e_value=3e-128) Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2;; (*TAIR) AT2G15690.1 (e_value=2e-129) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6831855-6833594 REVERSE LENGTH=579;; (*ITAG) Solyc07g021620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:20368252-20369652 transcript_region:SL2.40ch07:20368252..20369652+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00027220g0014.1 protein AED:0.21 eAED:0.27 QI:0|0|0|1|0.25|0.2|5|0|453; (*TAIR) AT5G56780.1 (e_value=4e-71) | Symbols: ATET2, ET2 | effector of transcription2 | chr5:22964384-22966241 REVERSE LENGTH=483;; (*ITAG) Solyc07g021550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:19453609-19456445 transcript_region:SL2.40ch07:19453609..19456445+ functional_description:"Transcripteion factor (Fragment) (AHRD V1 ***- O04239_VICFA)"; NbS00027220g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.45|0.81|0.6|0.63|11|0|724; (*SWP) sp|P0DH62|Y4407_SELML (e_value=1e-121) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc07g027020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:33214854-33219582 transcript_region:SL2.40ch07:33214854..33219582- go_terms:GO:0005840,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005840,GO:0006468 NbS00027220g0013.1 protein AED:0.28 eAED:0.29 QI:0|1|0.6|1|1|1|5|0|243; (*SWP) sp|P16260|GDC_HUMAN (e_value=4e-40) Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3;; (*TAIR) AT4G26180.1 (e_value=2e-117) | Symbols: | Mitochondrial substrate carrier family protein | chr4:13260263-13261887 REVERSE LENGTH=325;; (*ITAG) Solyc12g008770.1.1 (e_value=3e-159) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2123672-2126297 transcript_region:SL2.40ch12:2123672..2126297+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein-like (AHRD V1 ***- Q8S1A3_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00040598g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0|1|1|0.66|3|0|92; (*TAIR) AT1G34065.1 (e_value=2e-41) | Symbols: SAMC2 | S-adenosylmethionine carrier 2 | chr1:12398717-12401036 REVERSE LENGTH=345;; (*ITAG) Solyc12g056660.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48016818-48021020 transcript_region:SL2.40ch12:48016818..48021020- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00040598g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.6|1|0.75|0.8|5|0|464; (*SWP) sp|Q93Z38|TAR4_ARATH (e_value=4e-173) Tryptophan aminotransferase-related protein 4 OS=Arabidopsis thaliana GN=TAR4 PE=2 SV=2;; (*TAIR) AT1G34060.1 (e_value=3e-174) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:12396561-12398299 REVERSE LENGTH=463;; (*ITAG) Solyc02g062190.1.1 (e_value=1e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28355495-28357157 transcript_region:SL2.40ch02:28355495..28357157+ go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- D2CXF2_ALLSA); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00014532g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|199; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=3e-31) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=2e-32) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g078420.1.1 (e_value=7e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59396497-59396940 transcript_region:SL2.40ch08:59396497..59396940+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017253g0008.1 protein AED:0.29 eAED:0.29 QI:302|0.8|0.83|1|0.4|0.33|6|11|394; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=3e-80) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=2e-81) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc10g017880.1.1 (e_value=1e-177) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:6067349-6073483 transcript_region:SL2.40ch10:6067349..6073483- functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR)"; NbS00017253g0002.1 protein AED:0.38 eAED:0.38 QI:0|1|0.85|1|1|1|7|194|235; (*SWP) sp|Q9LQ73|PX11C_ARATH (e_value=1e-137) Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1;; (*TAIR) AT1G01820.1 (e_value=8e-139) | Symbols: PEX11C | peroxin 11c | chr1:296213-297723 REVERSE LENGTH=235;; (*ITAG) Solyc10g017850.2.1 (e_value=7e-146) genomic_reference:SL2.40ch10 gene_region:6046481-6049651 transcript_region:SL2.40ch10:6046481..6049651+ go_terms:GO:0005778 functional_description:"Peroxisomal membrane protein 11-1 (AHRD V1 ***- PX111_ORYSJ); contains Interpro domain(s) IPR008733 Peroxisomal biogenesis factor 11 "; GO:0005778 NbS00017253g0010.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|0|0|4|0|217; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=1e-84) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.1 (e_value=1e-85) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=290;; (*ITAG) Solyc10g017960.1.1 (e_value=2e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6100868-6103519 transcript_region:SL2.40ch10:6100868..6103519- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 *-*- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00005299g0009.1 protein AED:0.16 eAED:0.16 QI:51|0.4|0.5|0.83|1|1|6|0|574; (*SWP) sp|O23976|C76B1_HELTU (e_value=3e-150) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=3e-128) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g065230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30980986-30982721 transcript_region:SL2.40ch02:30980986..30982721+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005299g0023.1 protein AED:0.17 eAED:0.21 QI:264|0.83|0.42|1|0.83|0.71|7|0|207; (*TAIR) AT5G66930.2 (e_value=1e-88) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr5:26725997-26727549 FORWARD LENGTH=215;; (*ITAG) Solyc02g065180.2.1 (e_value=4e-125) genomic_reference:SL2.40ch02 gene_region:30918048-30924916 transcript_region:SL2.40ch02:30918048..30924916+ functional_description:"Genomic DNA chromosome 5 P1 clone MUD21 (AHRD V1 **-- Q9FKY8_ARATH); contains Interpro domain(s) IPR012445 Protein of unknown function DUF1649 "; NbS00005299g0016.1 protein AED:0.06 eAED:0.25 QI:557|0|0.5|1|0|0|2|628|60 NbS00005299g0027.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|106|251; (*SWP) sp|O64635|C76C4_ARATH (e_value=2e-83) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=1e-84) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g065230.2.1 (e_value=6e-121) genomic_reference:SL2.40ch02 gene_region:30980986-30982721 transcript_region:SL2.40ch02:30980986..30982721+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00005299g0019.1 protein AED:0.24 eAED:0.24 QI:118|0.5|0.66|1|0|0.66|3|347|200; (*TAIR) AT1G49520.1 (e_value=1e-16) | Symbols: | SWIB complex BAF60b domain-containing protein | chr1:18329736-18331691 FORWARD LENGTH=372;; (*ITAG) Solyc02g065160.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30895309-30901017 transcript_region:SL2.40ch02:30895309..30901017- functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 *-*- B6SRJ0_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; NbS00005299g0014.1 protein AED:0.25 eAED:0.26 QI:0|0.33|0.25|1|1|1|4|0|467; (*SWP) sp|O23976|C76B1_HELTU (e_value=1e-159) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT2G45550.1 (e_value=1e-149) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc02g065230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30980986-30982721 transcript_region:SL2.40ch02:30980986..30982721+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007473g0019.1 protein AED:0.09 eAED:0.09 QI:0|1|0.81|1|0.9|1|11|0|386; (*SWP) sp|O48901|DPOD1_SOYBN (e_value=0.0) DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1;; (*TAIR) AT5G63960.1 (e_value=0.0) | Symbols: | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095;; (*ITAG) Solyc10g081250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61678761-61699648 transcript_region:SL2.40ch10:61678761..61699648+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 ***- C5Y6L0_SORBI); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003676,GO:0006260,GO:0006139 NbS00007473g0017.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|0.5|2|0|115; (*SWP) sp|O48901|DPOD1_SOYBN (e_value=7e-27) DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1;; (*TAIR) AT5G63960.1 (e_value=5e-21) | Symbols: | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1095;; (*ITAG) Solyc10g081250.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61678761-61699648 transcript_region:SL2.40ch10:61678761..61699648+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 ***- C5Y6L0_SORBI); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003676,GO:0006260,GO:0006139 NbS00007473g0016.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|1|1|3|374|387; (*SWP) sp|Q8DJB3|GRPE_THEEB (e_value=2e-39) Protein grpE OS=Thermosynechococcus elongatus (strain BP-1) GN=grpE PE=3 SV=1;; (*TAIR) AT5G17710.1 (e_value=2e-92) | Symbols: EMB1241 | Co-chaperone GrpE family protein | chr5:5839560-5841639 REVERSE LENGTH=324;; (*ITAG) Solyc10g081240.1.1 (e_value=2e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61667783-61677144 transcript_region:SL2.40ch10:61667783..61677144+ go_terms:GO:0005515,GO:0006457,GO:0005739 functional_description:"Protein grpE (AHRD V1 *-*- B0CAY8_ACAM1); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005515,GO:0006457,GO:0005739 NbS00007473g0015.1 protein AED:0.08 eAED:0.22 QI:0|0|0|1|0|0.5|2|0|177; (*SWP) sp|Q0WTI8|DNJ72_ARATH (e_value=6e-27) Chaperone protein dnaJ 72 OS=Arabidopsis thaliana GN=ATJ72 PE=2 SV=1;; (*TAIR) AT2G41000.1 (e_value=5e-28) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:17111673-17113247 FORWARD LENGTH=184;; (*ITAG) Solyc10g081220.1.1 (e_value=2e-78) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:61660250-61662784 transcript_region:SL2.40ch10:61660250..61662784+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2S949_BACCE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00007473g0018.1 protein AED:0.25 eAED:0.25 QI:36|0.33|0|0.75|0.66|0.5|4|0|160; (*SWP) sp|O48901|DPOD1_SOYBN (e_value=3e-80) DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2 SV=1;; (*TAIR) AT5G63960.2 (e_value=8e-77) | Symbols: | DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases | chr5:25599597-25606672 FORWARD LENGTH=1112;; (*ITAG) Solyc10g081250.1.1 (e_value=1e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61678761-61699648 transcript_region:SL2.40ch10:61678761..61699648+ go_terms:GO:0003676,GO:0006260,GO:0006139 functional_description:"DNA polymerase (AHRD V1 ***- C5Y6L0_SORBI); contains Interpro domain(s) IPR004578 DNA-directed DNA polymerase, family B, pol2 "; GO:0003676,GO:0006260,GO:0006139 NbS00007473g0014.1 protein AED:0.51 eAED:0.51 QI:0|0.33|0.25|0.75|0.66|0.5|4|358|232; (*TAIR) AT4G18590.1 (e_value=1e-50) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:10236524-10236940 FORWARD LENGTH=106;; (*ITAG) Solyc09g009900.2.1 (e_value=8e-56) genomic_reference:SL2.40ch09 gene_region:3382755-3386531 transcript_region:SL2.40ch09:3382755..3386531- go_terms:GO:0005515 functional_description:"Pollen-specific protein - like (AHRD V1 ***- O49527_ARATH); contains Interpro domain(s) IPR013970 Replication factor A protein 3 "; GO:0005515 NbS00007473g0025.1 protein AED:0.25 eAED:0.38 QI:0|0|0|0.5|0.42|0.5|8|0|364 NbS00012526g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|272; (*SWP) sp|Q8VYI1|SBH1_ARATH (e_value=1e-134) Sphingoid base hydroxylase 1 OS=Arabidopsis thaliana GN=SBH1 PE=2 SV=1;; (*TAIR) AT1G69640.1 (e_value=1e-135) | Symbols: SBH1 | sphingoid base hydroxylase 1 | chr1:26193933-26195466 REVERSE LENGTH=260;; (*ITAG) Solyc05g007460.2.1 (e_value=1e-163) genomic_reference:SL2.40ch05 gene_region:2030433-2034096 transcript_region:SL2.40ch05:2030433..2034096+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 **-* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00012526g0004.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|261; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=2e-78) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00012526g0014.1 protein AED:0.33 eAED:0.45 QI:0|0|0|0.87|0.14|0.25|8|0|438; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=5e-47) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*ITAG) Solyc05g007350.1.1 (e_value=5e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00012526g0007.1 protein AED:0.60 eAED:0.64 QI:0|0|0|0.33|1|1|3|0|82 NbS00028510g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|0.90|1|1|1|11|370|372; (*SWP) sp|Q40742|RAD23_ORYSJ (e_value=4e-124) Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2;; (*TAIR) AT3G02540.3 (e_value=2e-122) | Symbols: RAD23C | Rad23 UV excision repair protein family | chr3:533095-536151 REVERSE LENGTH=418;; (*ITAG) Solyc02g063130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29750711-29757113 transcript_region:SL2.40ch02:29750711..29757113- go_terms:GO:0031593,GO:0070628 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593,GO:0070628 NbS00028510g0011.1 protein AED:0.06 eAED:0.06 QI:158|1|0.86|1|1|1|15|332|535; (*SWP) sp|P80317|TCPZ_MOUSE (e_value=0.0) T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3;; (*TAIR) AT3G02530.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00049889g0002.1 protein AED:0.01 eAED:0.01 QI:524|0.5|0.66|1|0|0.33|3|969|456; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=4e-79) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=3e-80) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc03g095490.2.1 (e_value=5e-124) genomic_reference:SL2.40ch03 gene_region:50063905-50066754 transcript_region:SL2.40ch03:50063905..50066754+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00055180g0004.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|106; (*SWP) sp|Q8LAA6|PIP15_ARATH (e_value=1e-24) Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2;; (*TAIR) AT4G23400.1 (e_value=9e-26) | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic protein 1;5 | chr4:12220792-12222155 FORWARD LENGTH=287;; (*ITAG) Solyc08g008050.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:2541278-2544496 transcript_region:SL2.40ch08:2541278..2544496+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W507_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbC25406327g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|186; (*ITAG) Solyc08g082510.1.1 (e_value=3e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62444057-62445175 transcript_region:SL2.40ch08:62444057..62445175+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00006681g0004.1 protein AED:0.08 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|227; (*TAIR) AT3G56880.1 (e_value=2e-31) | Symbols: | VQ motif-containing protein | chr3:21060044-21060781 FORWARD LENGTH=245;; (*ITAG) Solyc10g077130.1.1 (e_value=3e-69) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59327643-59328260 transcript_region:SL2.40ch10:59327643..59328260+ functional_description:"Atcambp25-binding protein OF (AHRD V1 ***- D7LGI4_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00022794g0011.1 protein AED:0.24 eAED:0.25 QI:84|0.75|0.44|1|0.62|0.66|9|0|639; (*SWP) sp|O22285|PMTB_ARATH (e_value=0.0) Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1;; (*TAIR) AT2G39750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16578986-16582281 REVERSE LENGTH=694;; (*ITAG) Solyc05g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62285580-62291311 transcript_region:SL2.40ch05:62285580..62291311+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00022794g0008.1 protein AED:0.14 eAED:0.14 QI:186|1|0.66|1|1|1|3|0|416; (*SWP) sp|P49598|P2C37_ARATH (e_value=2e-130) Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1;; (*TAIR) AT3G11410.1 (e_value=2e-131) | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 2CA | chr3:3584181-3585649 REVERSE LENGTH=399;; (*ITAG) Solyc05g052980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62296077-62297965 transcript_region:SL2.40ch05:62296077..62297965- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q8RVG0_TOBAC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00030744g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|97; (*TAIR) AT2G31160.1 (e_value=6e-34) | Symbols: LSH3 | Protein of unknown function (DUF640) | chr2:13277903-13278562 FORWARD LENGTH=219;; (*ITAG) Solyc06g083860.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:45448018-45450744 transcript_region:SL2.40ch06:45448018..45450744- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 *-*- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00030744g0007.1 protein AED:0.28 eAED:0.48 QI:0|0|0|0.66|0.5|0.33|3|0|306 NbS00030744g0006.1 protein AED:0.42 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|237 NbS00035129g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|453; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=8e-26) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT3G57120.1 (e_value=1e-141) | Symbols: | Protein kinase superfamily protein | chr3:21139099-21140469 FORWARD LENGTH=456;; (*ITAG) Solyc06g075030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42943944-42945281 transcript_region:SL2.40ch06:42943944..42945281+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM62_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00046762g0001.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.66|1|1|1|6|262|168; (*SWP) sp|O82197|VP321_ARATH (e_value=1e-62) Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1;; (*TAIR) AT2G19830.1 (e_value=1e-63) | Symbols: SNF7.2, VPS32 | SNF7 family protein | chr2:8558101-8559389 REVERSE LENGTH=213;; (*ITAG) Solyc05g026050.2.1 (e_value=3e-71) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00048907g0004.1 protein AED:0.22 eAED:0.24 QI:0|0.33|0.25|1|0|0.5|4|0|587; (*SWP) sp|Q9M3B0|PME34_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1;; (*TAIR) AT3G49220.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:18249840-18253647 FORWARD LENGTH=598;; (*ITAG) Solyc06g051960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32128328-32131813 transcript_region:SL2.40ch06:32128328..32131813+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9IDR8_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00002847g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.71|0.62|1|0.85|0.87|8|443|343; (*SWP) sp|Q9LXJ0|FTZ22_ARATH (e_value=7e-114) Cell division protein FtsZ homolog 2-2, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-2 PE=1 SV=1;; (*TAIR) AT3G52750.1 (e_value=5e-115) | Symbols: FTSZ2-2 | Tubulin/FtsZ family protein | chr3:19549841-19552435 REVERSE LENGTH=473;; (*ITAG) Solyc10g083490.1.1 (e_value=6e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62591083-62601325 transcript_region:SL2.40ch10:62591083..62601325+ go_terms:GO:0005737,GO:0043234 functional_description:"Cell division protein ftsZ (AHRD V1 ***- A0YTK0_LYNSP); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0005737,GO:0043234 NbS00002847g0006.1 protein AED:0.33 eAED:0.45 QI:173|0.5|0.66|1|0.5|0.66|3|0|82; (*SWP) sp|P46270|QCR9_SOLTU (e_value=1e-28) Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G52730.1 (e_value=3e-31) | Symbols: | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein | chr3:19543146-19544167 REVERSE LENGTH=72;; (*ITAG) Solyc11g068400.1.1 (e_value=9e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50223989-50227276 transcript_region:SL2.40ch11:50223989..50227276- go_terms:GO:0005740 functional_description:"Ubiquinol-cytochrome C reductase (AHRD V1 ***- D6BQN0_9ROSI); contains Interpro domain(s) IPR008027 Ubiquinol-cytochrome C reductase, UQCRX/QCR9-like "; GO:0005740 NbS00018319g0022.1 protein AED:0.22 eAED:0.22 QI:120|0.57|0.62|1|0.28|0.37|8|255|504; (*SWP) sp|Q9BUK6|MSTO1_HUMAN (e_value=1e-28) Protein misato homolog 1 OS=Homo sapiens GN=MSTO1 PE=1 SV=1;; (*TAIR) AT4G37190.1 (e_value=1e-179) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr4:17507155-17509512 FORWARD LENGTH=562;; (*ITAG) Solyc01g100190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00018319g0014.1 protein AED:0.24 eAED:0.24 QI:0|0.77|0.7|0.9|0.77|0.7|10|394|426; (*SWP) sp|Q9SUJ1|SYP43_ARATH (e_value=3e-164) Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2;; (*TAIR) AT3G05710.2 (e_value=2e-165) | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | chr3:1685262-1687229 FORWARD LENGTH=331;; (*ITAG) Solyc01g100170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81996286-82001234 transcript_region:SL2.40ch01:81996286..82001234+ go_terms:GO:0005484 functional_description:"Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) (AHRD V1 **** D7G2Z0_ECTSI); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00018319g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|646; (*SWP) sp|Q9LTI5|SCL11_ARATH (e_value=2e-169) Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1;; (*TAIR) AT5G59450.1 (e_value=1e-170) | Symbols: | GRAS family transcription factor | chr5:23974808-23976640 FORWARD LENGTH=610;; (*ITAG) Solyc01g100200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82020197-82022661 transcript_region:SL2.40ch01:82020197..82022661- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GJL6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00018319g0023.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.5|1|0.66|0.5|4|280|359; (*SWP) sp|Q895K2|DPO3_CLOTE (e_value=1e-15) DNA polymerase III polC-type OS=Clostridium tetani (strain Massachusetts / E88) GN=polC PE=3 SV=1;; (*TAIR) AT5G26940.4 (e_value=2e-82) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:9481429-9482647 FORWARD LENGTH=316;; (*ITAG) Solyc01g100180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82003601-82007422 transcript_region:SL2.40ch01:82003601..82007422- go_terms:GO:0003676,GO:0005622 functional_description:"DNA polymerase III polC-type (AHRD V1 *-*- D2GFM8_STAAU); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00018319g0024.1 protein AED:0.27 eAED:0.39 QI:0|0.25|0.4|0.8|0.5|0.8|5|58|127; (*SWP) sp|Q0JM76|GRXS4_ORYSJ (e_value=3e-22) Monothiol glutaredoxin-S4, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS4 PE=2 SV=1;; (*TAIR) AT3G15660.2 (e_value=2e-21) | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169;; (*ITAG) Solyc06g067960.2.1 (e_value=2e-34) genomic_reference:SL2.40ch06 gene_region:38512806-38516407 transcript_region:SL2.40ch06:38512806..38516407- go_terms:GO:0046872 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7L4W4_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0046872 NbC26095992g0004.1 protein AED:0.40 eAED:0.42 QI:0|0.83|0.57|0.85|1|1|7|0|211; (*TAIR) AT1G74530.1 (e_value=8e-92) | Symbols: | unknown protein; Has 49 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28009866-28012044 REVERSE LENGTH=289;; (*ITAG) Solyc03g116330.2.1 (e_value=4e-142) genomic_reference:SL2.40ch03 gene_region:59867711-59873429 transcript_region:SL2.40ch03:59867711..59873429+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q014A6_OSTTA)"; NbS00052203g0002.1 protein AED:0.34 eAED:0.34 QI:246|1|1|1|0.5|0.33|3|553|170; (*TAIR) AT1G18680.1 (e_value=3e-83) | Symbols: | HNH endonuclease domain-containing protein | chr1:6432133-6433434 REVERSE LENGTH=186;; (*ITAG) Solyc12g036250.1.1 (e_value=8e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:30145575-30148205 transcript_region:SL2.40ch12:30145575..30148205- go_terms:GO:0004519 functional_description:"HNH endonuclease domain-containing protein (Fragment) (AHRD V1 *-*- C6F7M2_PSEMZ); contains Interpro domain(s) IPR002711 HNH endonuclease "; GO:0004519 NbS00028149g0011.1 protein AED:0.16 eAED:0.16 QI:615|1|1|1|0.85|0.75|8|271|503; (*SWP) sp|Q9SJG2|Y2296_ARATH (e_value=0.0) Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1;; (*TAIR) AT2G42960.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17868597-17870630 REVERSE LENGTH=494;; (*ITAG) Solyc07g056270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61449169-61452759 transcript_region:SL2.40ch07:61449169..61452759+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00041597g0006.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|0.75|0.8|5|0|345; (*TAIR) AT1G07210.1 (e_value=1e-60) | Symbols: | Ribosomal protein S18 | chr1:2215320-2216668 FORWARD LENGTH=261;; (*ITAG) Solyc10g084700.1.1 (e_value=4e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63454624-63456888 transcript_region:SL2.40ch10:63454624..63456888+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 family (AHRD V1 ***- D7KH00_ARALY); contains Interpro domain(s) IPR001648 Ribosomal protein S18 "; GO:0005840 NbS00041597g0008.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|0|0|2|0|93 NbS00041597g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0.25|0.75|1|1|4|0|225; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=4e-61) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT3G14520.1 (e_value=4e-29) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4875868-4878243 REVERSE LENGTH=605;; (*ITAG) Solyc06g060180.1.1 (e_value=4e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34531453-34535121 transcript_region:SL2.40ch06:34531453..34535121+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00046406g0006.1 protein AED:0.36 eAED:0.36 QI:180|1|1|1|0.85|0.87|8|196|220; (*SWP) sp|P10792|SODCP_PETHY (e_value=3e-114) Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1;; (*TAIR) AT2G28190.1 (e_value=1e-94) | Symbols: CSD2, CZSOD2 | copper/zinc superoxide dismutase 2 | chr2:12014548-12016303 FORWARD LENGTH=216;; (*ITAG) Solyc11g066390.1.1 (e_value=3e-104) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49246132-49251451 transcript_region:SL2.40ch11:49246132..49251451+ go_terms:GO:0055114 functional_description:"Superoxide dismutase (AHRD V1 ***- Q7XAV2_SOLLC); contains Interpro domain(s) IPR018152 Superoxide dismutase, copper/zinc, binding site "; GO:0055114 NbS00012040g0004.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|155; (*TAIR) AT3G50470.1 (e_value=8e-13) | Symbols: HR3, MLA10 | homolog of RPW8 3 | chr3:18729146-18730162 FORWARD LENGTH=213;; (*ITAG) Solyc02g077060.1.1 (e_value=5e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36700197-36700676 transcript_region:SL2.40ch02:36700197..36700676+ functional_description:"RPW8.2 (AHRD V1 **-- C4P0N9_ARALP); contains Interpro domain(s) IPR008808 Mildew-resistance, broad-spectrum "; NbS00012040g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|97; (*TAIR) AT1G28395.4 (e_value=2e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9969817-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc02g077730.2.1 (e_value=1e-27) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012040g0014.1 protein AED:0.24 eAED:0.24 QI:161|1|0.90|1|0.8|0.81|11|0|493; (*SWP) sp|Q4PJX1|ODR4_MOUSE (e_value=5e-23) Protein odr-4 homolog OS=Mus musculus GN=Odr4 PE=2 SV=2;; (*TAIR) AT3G28670.1 (e_value=3e-144) | Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr3:10744183-10746983 FORWARD LENGTH=491;; (*ITAG) Solyc02g014380.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:7193767-7200167 transcript_region:SL2.40ch02:7193767..7200167+ go_terms:GO:0055114 functional_description:"Protein odr-4 homolog (AHRD V1 ***- ODR4_MOUSE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0055114 NbS00004689g0012.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|0.5|0.66|3|0|717; (*SWP) sp|Q8S8N4|Y2685_ARATH (e_value=0.0) Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana GN=At2g46850 PE=2 SV=1;; (*TAIR) AT2G46850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:19251083-19253313 FORWARD LENGTH=633;; (*ITAG) Solyc10g005140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:125748-128085 transcript_region:SL2.40ch10:125748..128085- go_terms:GO:0006468,GO:0031177 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468,GO:0031177 NbS00004689g0016.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|267|115; (*SWP) sp|Q8LMR2|DCL1_ORYSJ (e_value=8e-46) Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1;; (*TAIR) AT1G01040.2 (e_value=2e-38) | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1910;; (*ITAG) Solyc10g005130.2.1 (e_value=6e-48) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00004689g0017.1 protein AED:0.17 eAED:0.17 QI:0|1|0.33|1|0.5|1|3|0|346; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=4e-69) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT4G16330.2 (e_value=6e-149) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9226298-9227914 REVERSE LENGTH=364;; (*ITAG) Solyc10g005120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:104397-108110 transcript_region:SL2.40ch10:104397..108110+ go_terms:GO:0016706,GO:0016682 functional_description:"Flavanone 3-hydroxylase (AHRD V1 **-- Q5XPX2_GINBI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00024243g0001.1 protein AED:0.35 eAED:0.35 QI:0|1|1|1|1|1|3|214|190; (*SWP) sp|P30155|RK27_TOBAC (e_value=1e-95) 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1;; (*TAIR) AT5G40950.1 (e_value=6e-77) | Symbols: RPL27 | ribosomal protein large subunit 27 | chr5:16410866-16411845 FORWARD LENGTH=198;; (*ITAG) Solyc11g068820.1.1 (e_value=2e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50513890-50516507 transcript_region:SL2.40ch11:50513890..50516507- go_terms:GO:0005840 functional_description:"50S ribosomal protein L27 (AHRD V1 ***- Q8LEF5_ARATH); contains Interpro domain(s) IPR001684 Ribosomal protein L27 "; GO:0005840 NbS00024243g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0|1|1|1|3|0|535; (*TAIR) AT3G01930.2 (e_value=1e-171) | Symbols: | Major facilitator superfamily protein | chr3:319289-321488 REVERSE LENGTH=584;; (*ITAG) Solyc02g094190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00029317g0012.1 protein AED:0.03 eAED:0.10 QI:0|0.8|0.16|0.83|0.4|0.83|6|0|430; (*SWP) sp|Q93YS2|P2C51_ARATH (e_value=4e-82) Probable protein phosphatase 2C 51 OS=Arabidopsis thaliana GN=At3g63340 PE=2 SV=2;; (*TAIR) AT3G63340.1 (e_value=1e-78) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc06g084100.2.1 (e_value=2e-137) genomic_reference:SL2.40ch06 gene_region:45631304-45633201 transcript_region:SL2.40ch06:45631304..45633201- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_HUMAN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00029317g0008.1 protein AED:0.23 eAED:0.25 QI:0|0.57|0.37|0.87|1|1|8|0|343; (*SWP) sp|Q8GY55|TIF4B_ARATH (e_value=6e-50) Protein TIFY 4B OS=Arabidopsis thaliana GN=TIFY4B PE=1 SV=1;; (*TAIR) AT4G14720.1 (e_value=5e-51) | Symbols: PPD2, TIFY4B | TIFY domain/Divergent CCT motif family protein | chr4:8432452-8434934 REVERSE LENGTH=315;; (*ITAG) Solyc06g084120.2.1 (e_value=2e-129) genomic_reference:SL2.40ch06 gene_region:45635906-45639918 transcript_region:SL2.40ch06:45635906..45639918- functional_description:"Protein TIFY 4B (AHRD V1 ***- TIF4B_ARATH); contains Interpro domain(s) IPR010399 Tify "; NbS00029317g0013.1 protein AED:0.13 eAED:0.22 QI:72|0.66|0.25|1|0.33|0.5|4|0|203; (*SWP) sp|Q94A20|BI1L_ARATH (e_value=1e-77) BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1;; (*TAIR) AT1G03070.2 (e_value=2e-116) | Symbols: | Bax inhibitor-1 family protein | chr1:730148-731379 FORWARD LENGTH=247;; (*ITAG) Solyc06g084130.2.1 (e_value=4e-128) genomic_reference:SL2.40ch06 gene_region:45643108-45644440 transcript_region:SL2.40ch06:45643108..45644440+ go_terms:GO:0016595,GO:0005102 functional_description:"Transmembrane BAX inhibitor motif-containing protein 4 (AHRD V1 **-- B6TZF1_MAIZE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0016595,GO:0005102 NbS00020680g0007.1 protein AED:0.21 eAED:0.22 QI:187|0.85|0.75|0.87|0.85|0.87|8|0|483; (*SWP) sp|Q93ZG7|RH38_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2;; (*TAIR) AT3G53110.1 (e_value=0.0) | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496;; (*ITAG) Solyc04g082790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63927360-63932321 transcript_region:SL2.40ch04:63927360..63932321- go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00020680g0006.1 protein AED:0.60 eAED:0.69 QI:0|0|0|0.75|1|1|4|0|192; (*ITAG) Solyc08g048200.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:38280858-38282373 transcript_region:SL2.40ch08:38280858..38282373+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00003233g0001.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|0.66|0.5|4|489|147; (*TAIR) AT3G24450.1 (e_value=2e-40) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:8880286-8881611 REVERSE LENGTH=140;; (*ITAG) Solyc01g105000.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:85070623-85071931 transcript_region:SL2.40ch01:85070623..85071931+ go_terms:GO:0030001 functional_description:"Copper chaperone (AHRD V1 *--- D3GC04_9ROSI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00003233g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.92|0.92|1|1|13|564|497; (*SWP) sp|P53383|MRP_SYNY3 (e_value=3e-50) Protein mrp homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrp PE=3 SV=1;; (*TAIR) AT3G24430.1 (e_value=0.0) | Symbols: HCF101 | ATP binding | chr3:8868731-8872154 REVERSE LENGTH=532;; (*ITAG) Solyc12g007010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1447019-1453220 transcript_region:SL2.40ch12:1447019..1453220+ go_terms:GO:0005524 functional_description:"Cytosolic Fe-S cluster assembly factor NUBP2 homolog (AHRD V1 *--- NUBP2_NEMVE); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0005524 NbS00006581g0001.1 protein AED:0.38 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|130 NbS00030120g0001.1 protein AED:0.30 eAED:0.31 QI:70|1|0.5|1|0|0|2|0|282; (*SWP) sp|Q9LDE2|BPC2_ARATH (e_value=1e-103) Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1;; (*TAIR) AT1G14685.1 (e_value=1e-104) | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine 2 | chr1:5043086-5043925 FORWARD LENGTH=279;; (*ITAG) Solyc04g008380.2.1 (e_value=7e-172) genomic_reference:SL2.40ch04 gene_region:2015697-2018738 transcript_region:SL2.40ch04:2015697..2018738- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- D7KCI3_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00030120g0007.1 protein AED:0.33 eAED:0.33 QI:701|0.8|0.81|1|0.8|0.81|11|283|306; (*SWP) sp|Q9M647|IAR1_ARATH (e_value=2e-108) IAA-alanine resistance protein 1 OS=Arabidopsis thaliana GN=IAR1 PE=1 SV=3;; (*TAIR) AT1G68100.1 (e_value=2e-109) | Symbols: IAR1 | ZIP metal ion transporter family | chr1:25521325-25524032 FORWARD LENGTH=469;; (*ITAG) Solyc04g008340.2.1 (e_value=9e-152) genomic_reference:SL2.40ch04 gene_region:1996927-2005002 transcript_region:SL2.40ch04:1996927..2005002- go_terms:GO:0016020 functional_description:"Zinc transporter (AHRD V1 *-*- B0WKX7_CULQU); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00005906g0003.1 protein AED:0.01 eAED:0.01 QI:202|1|1|1|1|1|2|262|305; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-44) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=2e-79) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc08g007560.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2106197-2107409 transcript_region:SL2.40ch08:2106197..2107409+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00000540g0001.1 protein AED:0.25 eAED:0.48 QI:0|0|0|1|1|1|2|0|151; (*ITAG) Solyc10g011880.1.1 (e_value=9e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:4148505-4149122 transcript_region:SL2.40ch10:4148505..4149122- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00006593g0101.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|211 NbS00006593g0102.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|229 NbS00034999g0005.1 protein AED:0.16 eAED:0.16 QI:243|1|1|1|0.75|0.6|5|657|531; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=7e-67) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=5e-68) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc12g006170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:712968-715497 transcript_region:SL2.40ch12:712968..715497- go_terms:GO:0045449 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00041775g0008.1 protein AED:0.12 eAED:0.12 QI:242|0.66|0.5|1|0.33|0.5|4|334|165; (*SWP) sp|Q41112|SRP_PHAVU (e_value=4e-42) Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1;; (*TAIR) AT2G47780.1 (e_value=2e-37) | Symbols: | Rubber elongation factor protein (REF) | chr2:19570076-19570864 FORWARD LENGTH=235;; (*ITAG) Solyc01g099680.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:81609802-81612012 transcript_region:SL2.40ch01:81609802..81612012+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00053222g0002.1 protein AED:0.10 eAED:0.16 QI:0|0|0|1|0|0|3|0|294; (*TAIR) AT5G02890.1 (e_value=9e-33) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:670207-671454 REVERSE LENGTH=353;; (*ITAG) Solyc08g078030.2.1 (e_value=8e-116) genomic_reference:SL2.40ch08 gene_region:59068934-59071763 transcript_region:SL2.40ch08:59068934..59071763- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 *--- B9IMB9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00005640g0004.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|2|0|233; (*ITAG) Solyc11g073020.1.1 (e_value=1e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53234523-53235739 transcript_region:SL2.40ch11:53234523..53235739- go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6T8A4_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00007623g0002.1 protein AED:0.38 eAED:0.48 QI:0|0|0|1|0|0.5|2|0|105 NbS00025236g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|69 NbS00025788g0003.1 protein AED:0.34 eAED:0.35 QI:0|0.33|0.25|1|0.66|0.25|4|342|340; (*SWP) sp|Q9CUS9|SPPL3_MOUSE (e_value=5e-42) Signal peptide peptidase-like 3 OS=Mus musculus GN=Sppl3 PE=2 SV=3;; (*TAIR) AT4G33410.1 (e_value=1e-168) | Symbols: ATSPPL1, SPPL1 | SIGNAL PEPTIDE PEPTIDASE-LIKE 1 | chr4:16081640-16083119 FORWARD LENGTH=372;; (*ITAG) Solyc03g025550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7323452-7329167 transcript_region:SL2.40ch03:7323452..7329167- go_terms:GO:0042500 functional_description:"Signal peptide peptidase family protein (AHRD V1 ***- D7M8R6_ARALY); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0042500 NbS00019331g0002.1 protein AED:0.10 eAED:0.10 QI:148|1|1|1|0.83|0.85|7|418|223; (*SWP) sp|O82531|PSB1_PETHY (e_value=1e-155) Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1;; (*TAIR) AT3G60820.3 (e_value=1e-141) | Symbols: PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:22472038-22473809 REVERSE LENGTH=223;; (*ITAG) Solyc02g084920.2.1 (e_value=4e-159) genomic_reference:SL2.40ch02 gene_region:42548635-42554662 transcript_region:SL2.40ch02:42548635..42554662- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SY64_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00023481g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|124; (*ITAG) Solyc03g121690.1.1 (e_value=8e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63832553-63833215 transcript_region:SL2.40ch03:63832553..63833215- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000383g0017.1 protein AED:0.10 eAED:0.11 QI:2|1|0.85|1|0.83|0.71|7|283|328; (*TAIR) AT3G05480.1 (e_value=3e-113) | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control protein family | chr3:1585383-1588238 FORWARD LENGTH=439;; (*ITAG) Solyc10g044780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23228575-23235285 transcript_region:SL2.40ch10:23228575..23235285- go_terms:GO:0006281 functional_description:"Cell cycle checkpoint control protein family (AHRD V1 **-- D7L3V1_ARALY); contains Interpro domain(s) IPR007268 Rad9 "; GO:0006281 NbS00000383g0011.1 protein AED:0.22 eAED:0.22 QI:335|1|1|1|0|1|3|559|112; (*SWP) sp|Q0DI31|CYC_ORYSJ (e_value=1e-74) Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1;; (*TAIR) AT4G10040.1 (e_value=1e-72) | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-6278281 FORWARD LENGTH=112;; (*ITAG) Solyc01g103220.2.1 (e_value=7e-75) genomic_reference:SL2.40ch01 gene_region:83625084-83629542 transcript_region:SL2.40ch01:83625084..83629542+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00000383g0013.1 protein AED:0.37 eAED:0.48 QI:0|1|0|1|1|1|2|0|71; (*TAIR) AT4G21192.2 (e_value=5e-33) | Symbols: | Cytochrome c oxidase biogenesis protein Cmc1-like | chr4:11294563-11295192 FORWARD LENGTH=80;; (*ITAG) Solyc01g103190.2.1 (e_value=3e-40) genomic_reference:SL2.40ch01 gene_region:83616111-83617335 transcript_region:SL2.40ch01:83616111..83617335+ go_terms:GO:0005507 functional_description:"COX assembly mitochondrial protein homolog (AHRD V1 ***- COXAM_SCHPO); contains Interpro domain(s) IPR013892 Cytochrome c oxidase biogenesis protein Cmc1-like "; GO:0005507 NbS00000383g0012.1 protein AED:0.19 eAED:0.22 QI:0|0|0|1|0|0|3|0|494; (*TAIR) AT1G57680.2 (e_value=1e-98) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:21362749-21363837 REVERSE LENGTH=362;; (*ITAG) Solyc01g103200.2.1 (e_value=8e-108) genomic_reference:SL2.40ch01 gene_region:83620668-83621921 transcript_region:SL2.40ch01:83620668..83621921+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006173g0005.1 protein AED:0.49 eAED:0.60 QI:0|0|0|1|1|1|2|0|357; (*ITAG) Solyc10g051090.1.1 (e_value=1e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:46983014-46988555 transcript_region:SL2.40ch10:46983014..46988555+ functional_description:"Serine/threonine-protein phosphatase 7 long form homolog (AHRD V1 *--- PPP7L_ARATH); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00006173g0016.1 protein AED:0.13 eAED:0.13 QI:0|0.4|0.66|1|0.2|0.33|6|338|403; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-53) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=9e-86) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc10g051130.1.1 (e_value=1e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47036930-47039759 transcript_region:SL2.40ch10:47036930..47039759- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00006173g0018.1 protein AED:0.15 eAED:0.15 QI:177|1|0.93|1|0.92|0.93|15|375|649; (*SWP) sp|Q8SKU2|TIC62_PEA (e_value=6e-150) Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2;; (*TAIR) AT3G18890.1 (e_value=5e-146) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:6511169-6514729 FORWARD LENGTH=641;; (*ITAG) Solyc10g051110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46996626-47003804 transcript_region:SL2.40ch10:46996626..47003804- go_terms:GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 *--- B0CAN3_ACAM1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00006173g0003.1 protein AED:0.24 eAED:0.24 QI:271|1|1|1|0.57|0.55|20|345|960; (*TAIR) AT5G55390.2 (e_value=0.0) | Symbols: EDM2 | ENHANCED DOWNY MILDEW 2 | chr5:22448152-22454414 REVERSE LENGTH=1297;; (*ITAG) Solyc10g051140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:47041862-47051854 transcript_region:SL2.40ch10:47041862..47051854- functional_description:"Genomic DNA chromosome 5 P1 clone MTE17 (AHRD V1 ***- Q9FJ71_ARATH)"; NbS00010256g0012.1 protein AED:0.12 eAED:0.12 QI:0|0.84|0.71|1|0.61|0.71|14|397|786; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=9e-90) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT1G08680.1 (e_value=7e-91) | Symbols: ZIGA4, AGD14 | ARF GAP-like zinc finger-containing protein ZIGA4 | chr1:2762820-2768387 FORWARD LENGTH=649;; (*ITAG) Solyc10g076990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59242945-59251017 transcript_region:SL2.40ch10:59242945..59251017+ go_terms:GO:0032312 functional_description:"Arf-GAP domain and FG repeats-containing protein 1 (AHRD V1 *--- AGFG1_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbS00010256g0011.1 protein AED:0.16 eAED:0.18 QI:0|0.33|0.25|1|0.33|0.25|4|339|1028; (*TAIR) AT5G17910.2 (e_value=7e-71) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29620.1). | chr5:5927906-5932292 FORWARD LENGTH=1342;; (*ITAG) Solyc10g077000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59252848-59257424 transcript_region:SL2.40ch10:59252848..59257424+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein expressed (AHRD V1 *-*- Q2QY95_ORYSJ)"; NbS00027334g0009.1 protein AED:0.10 eAED:0.10 QI:141|1|1|1|0.5|0.33|3|119|988; (*SWP) sp|Q9SYQ8|CLV1_ARATH (e_value=0.0) Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3;; (*TAIR) AT1G75820.1 (e_value=0.0) | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich receptor-like protein kinase family protein | chr1:28463631-28466652 REVERSE LENGTH=980;; (*ITAG) Solyc04g081590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63126375-63130644 transcript_region:SL2.40ch04:63126375..63130644- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00027589g0006.1 protein AED:0.01 eAED:0.01 QI:165|1|1|1|0.5|0.66|3|207|73; (*TAIR) AT5G55850.3 (e_value=1e-25) | Symbols: NOI | RPM1-interacting protein 4 (RIN4) family protein | chr5:22603617-22604850 FORWARD LENGTH=95;; (*ITAG) Solyc12g006080.1.1 (e_value=9e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:658608-660160 transcript_region:SL2.40ch12:658608..660160+ functional_description:"Nitrate-induced NOI protein (AHRD V1 **-- O22632_MAIZE); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00027589g0007.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|0.66|0.75|4|0|214; (*SWP) sp|A7SXK3|TMED_NEMVE (e_value=6e-15) Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1;; (*TAIR) AT3G07680.1 (e_value=2e-99) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:2455627-2456652 FORWARD LENGTH=208;; (*ITAG) Solyc12g006090.1.1 (e_value=1e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:660798-662711 transcript_region:SL2.40ch12:660798..662711- go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00027589g0008.1 protein AED:0.08 eAED:0.08 QI:142|0.75|0.8|1|0.5|0.6|5|302|425; (*TAIR) AT4G25330.1 (e_value=1e-26) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12957834-12958683 FORWARD LENGTH=229;; (*ITAG) Solyc12g006060.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:648797-656982 transcript_region:SL2.40ch12:648797..656982+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030442g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|0|0|3|0|331; (*SWP) sp|O49608|MYB32_ARATH (e_value=1e-52) Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1;; (*TAIR) AT4G28110.1 (e_value=2e-73) | Symbols: AtMYB41, MYB41 | myb domain protein 41 | chr4:13968166-13969384 REVERSE LENGTH=282;; (*ITAG) Solyc07g054840.2.1 (e_value=1e-93) genomic_reference:SL2.40ch07 gene_region:60342649-60343892 transcript_region:SL2.40ch07:60342649..60343892+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6R077_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00027694g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|558; (*SWP) sp|Q9SKK0|EBF1_ARATH (e_value=0.0) EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1;; (*TAIR) AT2G25490.1 (e_value=0.0) | Symbols: EBF1, FBL6 | EIN3-binding F box protein 1 | chr2:10848018-10850275 REVERSE LENGTH=628;; (*ITAG) Solyc08g060810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:42768508-42771708 transcript_region:SL2.40ch08:42768508..42771708- go_terms:GO:0005515,GO:0004842 functional_description:"Ubiquitin ligase complex F-box protein GRR1 (AHRD V1 *-** C5G8H6_AJEDR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00011575g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.78|0.9|0.95|0.84|0.85|20|494|721; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=0.0) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=0.0) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00011575g0014.1 protein AED:0.14 eAED:0.14 QI:207|0.57|0.75|0.87|0.42|0.5|8|312|623; (*SWP) sp|Q8GY87|UBC26_ARATH (e_value=4e-111) Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana GN=UBC26 PE=2 SV=2;; (*TAIR) AT1G53025.1 (e_value=3e-112) | Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19757072-19759474 REVERSE LENGTH=543;; (*ITAG) Solyc10g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1404113-1409238 transcript_region:SL2.40ch10:1404113..1409238- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00011575g0011.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|76; (*TAIR) AT1G53000.1 (e_value=5e-17) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=2e-18) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00011575g0016.1 protein AED:0.30 eAED:0.30 QI:79|0.81|0.91|1|0.90|1|12|0|583; (*SWP) sp|Q8NDF8|PAPD5_HUMAN (e_value=9e-56) PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2;; (*TAIR) AT5G53770.1 (e_value=2e-161) | Symbols: | Nucleotidyltransferase family protein | chr5:21826733-21829858 FORWARD LENGTH=530;; (*ITAG) Solyc10g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1395368-1403268 transcript_region:SL2.40ch10:1395368..1403268- go_terms:GO:0043221 functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 **-- TRF5_YEAST); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0043221 NbS00011575g0001.1 protein AED:0.31 eAED:0.32 QI:205|0|0.5|1|0|0.5|2|0|77; (*SWP) sp|Q54ID0|COX17_DICDI (e_value=5e-17) Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum GN=cox17 PE=3 SV=1;; (*TAIR) AT3G15352.1 (e_value=2e-28) | Symbols: ATCOX17, COX17 | cytochrome c oxidase 17 | chr3:5180266-5180490 FORWARD LENGTH=74;; (*ITAG) Solyc10g007010.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1412466-1412705 transcript_region:SL2.40ch10:1412466..1412705- go_terms:GO:0016531 functional_description:"Cytochrome c oxidase copper chaperone family protein (AHRD V1 **** D7KKD3_ARALY); contains Interpro domain(s) IPR007745 Cytochrome c oxidase copper chaperone "; GO:0016531 NbS00040130g0004.1 protein AED:0.24 eAED:0.59 QI:0|0|0|1|0|0.5|2|0|92 NbS00040130g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|85 NbS00013117g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|393; (*SWP) sp|Q9SVQ0|ERF62_ARATH (e_value=2e-50) Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1;; (*TAIR) AT4G13620.1 (e_value=1e-51) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:7932138-7933304 FORWARD LENGTH=388;; (*ITAG) Solyc09g091950.1.1 (e_value=1e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66501954-66503585 transcript_region:SL2.40ch09:66501954..66503585+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00005753g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|168; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-15) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=2e-41) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079150.1.1 (e_value=2e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59962300-59962788 transcript_region:SL2.40ch08:59962300..59962788+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00005753g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|1|1|2|0|302; (*SWP) sp|A2AIL4|CH038_MOUSE (e_value=4e-61) UPF0551 protein C8orf38 homolog, mitochondrial OS=Mus musculus PE=1 SV=1;; (*TAIR) AT1G62730.1 (e_value=2e-156) | Symbols: | Terpenoid synthases superfamily protein | chr1:23229204-23230118 REVERSE LENGTH=304;; (*ITAG) Solyc08g007440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2005498-2006409 transcript_region:SL2.40ch08:2005498..2006409- go_terms:GO:0009058 functional_description:"Phytoene synthase (AHRD V1 ***- B6TWB6_MAIZE); contains Interpro domain(s) IPR002060 Squalene/phytoene synthase "; GO:0009058 NbS00047826g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|196 NbS00015257g0006.1 protein AED:0.37 eAED:0.38 QI:553|0.33|0.42|0.85|0.66|0.71|7|0|146; (*SWP) sp|P28304|QOR1_ECOLI (e_value=4e-24) Quinone oxidoreductase 1 OS=Escherichia coli (strain K12) GN=qorA PE=1 SV=1;; (*TAIR) AT5G61510.1 (e_value=5e-62) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:24737084-24738975 REVERSE LENGTH=406;; (*ITAG) Solyc06g034120.2.1 (e_value=4e-70) genomic_reference:SL2.40ch06 gene_region:20385126-20392654 transcript_region:SL2.40ch06:20385126..20392654+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 ***- A6X535_OCHA4); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00021527g0003.1 protein AED:0.31 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|246 NbS00053700g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|232; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=1e-28) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=1e-29) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc11g012330.1.1 (e_value=5e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5182505-5183887 transcript_region:SL2.40ch11:5182505..5183887- go_terms:GO:0005622 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 ***- B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0005622 NbS00043054g0002.1 protein AED:0.12 eAED:0.13 QI:196|0.8|0.66|1|0.8|0.83|6|0|457; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=4e-150) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G05940.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc07g041940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51996488-51998745 transcript_region:SL2.40ch07:51996488..51998745+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001057g0005.1 protein AED:0.02 eAED:0.02 QI:51|1|1|1|1|1|3|370|297; (*TAIR) AT4G17940.1 (e_value=1e-51) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9965787-9966778 FORWARD LENGTH=274;; (*ITAG) Solyc08g076730.2.1 (e_value=3e-126) genomic_reference:SL2.40ch08 gene_region:57847867-57849297 transcript_region:SL2.40ch08:57847867..57849297- go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003728g0012.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.63|0.90|0.5|0.54|11|0|573; (*SWP) sp|Q5W7F2|AGD3_ARATH (e_value=0.0) ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1;; (*TAIR) AT5G13300.1 (e_value=0.0) | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827;; (*ITAG) Solyc12g042170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42646392-42654179 transcript_region:SL2.40ch12:42646392..42654179- go_terms:GO:0030506 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0030506 NbS00003728g0013.1 protein AED:0.15 eAED:0.18 QI:0|0.8|0.66|0.83|0.2|0.16|6|355|196; (*TAIR) AT5G50930.1 (e_value=2e-40) | Symbols: | Histone superfamily protein | chr5:20722069-20724317 FORWARD LENGTH=242;; (*ITAG) Solyc07g054400.1.1 (e_value=1e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60051104-60051544 transcript_region:SL2.40ch07:60051104..60051544+ go_terms:GO:0003677 functional_description:"Centromere protein S (AHRD V1 *-*- CENPS_HUMAN); contains Interpro domain(s) IPR009072 Histone-fold "; GO:0003677 NbS00008628g0002.1 protein AED:0.00 eAED:0.00 QI:100|1|0.5|1|0|0.5|2|0|244; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=5e-128) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G03510.2 (e_value=2e-48) | Symbols: RMA1, ATRMA1 | RING membrane-anchor 1 | chr4:1557905-1558654 REVERSE LENGTH=249;; (*ITAG) Solyc07g054080.1.1 (e_value=4e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59811811-59812539 transcript_region:SL2.40ch07:59811811..59812539+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6TI40_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00000504g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|1|0.75|4|0|864; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=5e-177) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=4e-178) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc02g021410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13316497-13319526 transcript_region:SL2.40ch02:13316497..13319526+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00000504g0008.1 protein AED:0.39 eAED:0.40 QI:0|1|0.33|1|1|1|3|453|72; (*TAIR) AT1G29850.1 (e_value=5e-18) | Symbols: | double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129;; (*ITAG) Solyc02g071150.2.1 (e_value=2e-20) genomic_reference:SL2.40ch02 gene_region:35217704-35225700 transcript_region:SL2.40ch02:35217704..35225700- go_terms:GO:0005515,GO:0003690 functional_description:"DNA-binding protein (AHRD V1 **** B7R4T4_9EURY); contains Interpro domain(s) IPR002836 DNA-binding TFAR19-related protein "; GO:0005515,GO:0003690 NbS00005939g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|5|0|653; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-113) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=5e-120) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00005939g0007.1 protein AED:0.18 eAED:0.18 QI:89|1|1|1|0.71|0.75|8|717|322; (*SWP) sp|Q9LY66|RK1_ARATH (e_value=2e-148) 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1;; (*TAIR) AT3G63490.1 (e_value=1e-149) | Symbols: | Ribosomal protein L1p/L10e family | chr3:23444269-23446020 FORWARD LENGTH=346;; (*ITAG) Solyc01g087730.2.1 (e_value=9e-173) genomic_reference:SL2.40ch01 gene_region:74419417-74424513 transcript_region:SL2.40ch01:74419417..74424513+ go_terms:GO:0006396,GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L1 (AHRD V1 ***- A8YGI8_MICAE); contains Interpro domain(s) IPR005878 Ribosomal protein L1, bacterial-type "; GO:0006396,GO:0005840,GO:0015934 NbS00005939g0108.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|8|398|765 NbS00005939g0111.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0|0.66|1|1|3|0|123 NbS00035776g0010.1 protein AED:0.10 eAED:0.10 QI:1345|1|1|1|0.77|0.7|10|298|586; (*TAIR) AT1G28240.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr1:9868521-9871798 REVERSE LENGTH=581;; (*ITAG) Solyc03g006430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1029435-1035364 transcript_region:SL2.40ch03:1029435..1035364+ functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00027400g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.64|0.73|0.93|0.78|0.86|15|394|562; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc06g071330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40280501-40289831 transcript_region:SL2.40ch06:40280501..40289831- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00004958g0006.1 protein AED:0.17 eAED:0.25 QI:0|1|0.5|1|1|1|2|163|73; (*TAIR) AT2G20480.1 (e_value=3e-20) | Symbols: | unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8830715-8831496 REVERSE LENGTH=63;; (*ITAG) Solyc01g020320.2.1 (e_value=1e-33) genomic_reference:SL2.40ch01 gene_region:29294796-29295424 transcript_region:SL2.40ch01:29294796..29295424- functional_description:"Unknown Protein (AHRD V1)"; NbS00004958g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|0.5|0.33|3|0|119; (*TAIR) AT4G03420.1 (e_value=1e-39) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc10g008480.2.1 (e_value=3e-39) genomic_reference:SL2.40ch10 gene_region:2599168-2602228 transcript_region:SL2.40ch10:2599168..2602228- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00004958g0002.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|68; (*TAIR) AT4G03420.1 (e_value=3e-20) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc01g016510.1.1 (e_value=2e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:20439523-20440743 transcript_region:SL2.40ch01:20439523..20440743+ functional_description:"AT4g03420/F9H3_4 (AHRD V1 ***- Q8S9K9_ARATH); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00020768g0003.1 protein AED:0.23 eAED:0.24 QI:232|0.76|0.88|0.94|0.70|0.72|18|201|685; (*SWP) sp|Q32PJ3|ORC3_BOVIN (e_value=1e-11) Origin recognition complex subunit 3 OS=Bos taurus GN=ORC3 PE=2 SV=1;; (*TAIR) AT5G16690.1 (e_value=4e-140) | Symbols: ORC3, ATORC3 | origin recognition complex subunit 3 | chr5:5474410-5479878 FORWARD LENGTH=734;; (*ITAG) Solyc12g013880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4667669-4679426 transcript_region:SL2.40ch12:4667669..4679426- go_terms:GO:0005664 functional_description:"Origin recognition complex subunit 3 (AHRD V1 ***- Q945C6_MAIZE); contains Interpro domain(s) IPR010748 Origin recognition complex subunit 3, N-terminal "; GO:0005664 NbS00003516g0006.1 protein AED:0.33 eAED:0.33 QI:19|1|0.6|1|1|0.8|5|0|294; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=1e-85) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=1e-86) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc11g044320.1.1 (e_value=2e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35412464-35418671 transcript_region:SL2.40ch11:35412464..35418671- go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone (AHRD V1 ***- B9HN09_POPTR); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0005634,GO:0003677,GO:0045449 NbS00032415g0011.1 protein AED:0.20 eAED:0.26 QI:0|0.5|0.44|1|0.37|0.33|9|637|402; (*TAIR) AT5G20220.2 (e_value=5e-133) | Symbols: | zinc knuckle (CCHC-type) family protein | chr5:6822208-6825771 FORWARD LENGTH=393;; (*ITAG) Solyc05g007090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1668585-1672314 transcript_region:SL2.40ch05:1668585..1672314- go_terms:GO:0006457,GO:0008270 functional_description:"Zinc knuckle (CCHC-type) family protein (AHRD V1 ***- D7LZZ1_ARALY); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0006457,GO:0008270 NbS00032415g0006.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|4|0|441; (*SWP) sp|P40973|PLY_LILLO (e_value=3e-147) Pectate lyase OS=Lilium longiflorum PE=2 SV=1;; (*TAIR) AT1G14420.1 (e_value=1e-145) | Symbols: AT59 | Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459;; (*ITAG) Solyc05g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1665367-1668386 transcript_region:SL2.40ch05:1665367..1668386+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00032415g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.92|0.8|1|0.78|0.73|15|515|895; (*SWP) sp|A2YGY2|AMY2A_ORYSI (e_value=8e-108) Alpha-amylase isozyme 2A OS=Oryza sativa subsp. indica GN=AMYC2 PE=2 SV=1;; (*TAIR) AT1G69830.1 (e_value=0.0) | Symbols: ATAMY3, AMY3 | alpha-amylase-like 3 | chr1:26288518-26293003 REVERSE LENGTH=887;; (*ITAG) Solyc05g007070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1652423-1664598 transcript_region:SL2.40ch05:1652423..1664598+ go_terms:GO:0004556 functional_description:"Alpha amylase 2 (IC) (AHRD V1 *-** Q010P9_OSTTA); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556 NbS00003981g0008.1 protein AED:0.00 eAED:0.00 QI:270|1|1|1|1|1|3|242|119; (*SWP) sp|Q03701|CEBPZ_HUMAN (e_value=9e-15) CCAAT/enhancer-binding protein zeta OS=Homo sapiens GN=CEBPZ PE=1 SV=3;; (*TAIR) AT1G72440.1 (e_value=9e-31) | Symbols: EDA25, SWA2 | CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043;; (*ITAG) Solyc03g123530.2.1 (e_value=2e-54) genomic_reference:SL2.40ch03 gene_region:64408487-64419085 transcript_region:SL2.40ch03:64408487..64419085+ go_terms:GO:0005515,GO:0003677 functional_description:"CCAAT-box-binding transcription factor-like protein (AHRD V1 **** Q6YU01_ORYSJ); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; GO:0005515,GO:0003677 NbS00003981g0007.1 protein AED:0.00 eAED:0.00 QI:70|1|1|1|1|1|2|431|95; (*TAIR) AT1G72440.1 (e_value=6e-21) | Symbols: EDA25, SWA2 | CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043;; (*ITAG) Solyc03g123530.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:64408487-64419085 transcript_region:SL2.40ch03:64408487..64419085+ go_terms:GO:0005515,GO:0003677 functional_description:"CCAAT-box-binding transcription factor-like protein (AHRD V1 **** Q6YU01_ORYSJ); contains Interpro domain(s) IPR005612 CCAAT-binding factor "; GO:0005515,GO:0003677 NbS00052807g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.8|1|0.25|0.4|5|260|485; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=2e-168) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=1e-169) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc04g082220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63558916-63561283 transcript_region:SL2.40ch04:63558916..63561283- go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00028555g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|244|936; (*TAIR) AT4G14310.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:8237137-8240324 REVERSE LENGTH=893;; (*ITAG) Solyc09g090340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65194502-65198979 transcript_region:SL2.40ch09:65194502..65198979+ functional_description:"Peroxisomal membrane protein-like (AHRD V1 ***- Q6KA75_ORYSJ)"; NbS00025194g0009.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|163; (*ITAG) Solyc03g005670.2.1 (e_value=3e-33) genomic_reference:SL2.40ch03 gene_region:481129-483926 transcript_region:SL2.40ch03:481129..483926+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00040487g0010.1 protein AED:0.16 eAED:0.18 QI:108|0.81|0.66|1|0.63|0.58|12|0|969; (*SWP) sp|B9HQZ6|SYAP_POPTR (e_value=0.0) Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1;; (*TAIR) AT5G22800.1 (e_value=0.0) | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978;; (*ITAG) Solyc01g111990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89884444-89893360 transcript_region:SL2.40ch01:89884444..89893360+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** Q9FFC7_ARATH); contains Interpro domain(s) IPR002318 Alanyl-tRNA synthetase, class IIc "; GO:0000049 NbS00040487g0011.1 protein AED:0.29 eAED:0.30 QI:265|1|0.8|1|1|1|5|0|263; (*SWP) sp|Q9LZT4|EXLA1_ARATH (e_value=2e-114) Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1;; (*TAIR) AT3G45970.1 (e_value=2e-115) | Symbols: ATEXLA1, EXPL1, ATEXPL1, ATHEXP BETA 2.1, EXLA1 | expansin-like A1 | chr3:16896238-16897189 FORWARD LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=4e-157) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00040487g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|204; (*ITAG) Solyc01g090430.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:75881820-75886628 transcript_region:SL2.40ch01:75881820..75886628+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00040487g0012.1 protein AED:0.08 eAED:0.08 QI:90|1|0.8|1|1|1|5|0|569; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=0.0) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc01g111980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89876788-89879583 transcript_region:SL2.40ch01:89876788..89879583- go_terms:GO:0015171 functional_description:"Lysine/histidine transporter (AHRD V1 **** B9HR02_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00018157g0003.1 protein AED:0.19 eAED:0.31 QI:0|0|0|1|0|0|2|0|107 NbS00025854g0005.1 protein AED:0.12 eAED:0.12 QI:44|1|1|1|0.66|0.85|7|105|777; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=0.0) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc01g068360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69962432-69966964 transcript_region:SL2.40ch01:69962432..69966964+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00048387g0002.1 protein AED:0.00 eAED:0.00 QI:278|1|0.75|1|0.66|0.75|4|0|649; (*SWP) sp|Q681N2|PUB15_ARATH (e_value=0.0) U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2;; (*TAIR) AT5G42340.1 (e_value=0.0) | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16930367 REVERSE LENGTH=660;; (*ITAG) Solyc04g082440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63684002-63686801 transcript_region:SL2.40ch04:63684002..63686801+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00048387g0011.1 protein AED:0.28 eAED:0.28 QI:52|1|0.66|1|0.5|0.66|3|163|294; (*TAIR) AT2G45250.1 (e_value=5e-22) | Symbols: | Integral membrane protein hemolysin-III homolog | chr2:18661464-18662550 FORWARD LENGTH=204;; (*ITAG) Solyc04g082450.2.1 (e_value=5e-147) genomic_reference:SL2.40ch04 gene_region:63692397-63695176 transcript_region:SL2.40ch04:63692397..63695176+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048387g0009.1 protein AED:0.22 eAED:0.49 QI:0|0|0|1|0|0|2|0|119; (*ITAG) Solyc04g050030.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00034984g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|1|1|1|4|0|296; (*SWP) sp|Q9ZV04|PER24_ARATH (e_value=6e-95) Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1;; (*TAIR) AT2G39040.1 (e_value=5e-96) | Symbols: | Peroxidase superfamily protein | chr2:16299463-16301173 REVERSE LENGTH=350;; (*ITAG) Solyc01g067860.2.1 (e_value=9e-157) genomic_reference:SL2.40ch01 gene_region:69230427-69232025 transcript_region:SL2.40ch01:69230427..69232025+ go_terms:GO:0004601 functional_description:"Peroxidase 24 (AHRD V1 **** B6SRH9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00034984g0003.1 protein AED:0.12 eAED:0.44 QI:0|0|0|1|1|1|2|0|109; (*SWP) sp|Q9ZV04|PER24_ARATH (e_value=4e-18) Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1;; (*TAIR) AT2G39040.1 (e_value=3e-19) | Symbols: | Peroxidase superfamily protein | chr2:16299463-16301173 REVERSE LENGTH=350;; (*ITAG) Solyc01g067870.2.1 (e_value=4e-28) genomic_reference:SL2.40ch01 gene_region:69251012-69252672 transcript_region:SL2.40ch01:69251012..69252672+ go_terms:GO:0004601 functional_description:"Peroxidase 24 (AHRD V1 **** B6SRH9_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00001131g0009.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|308; (*SWP) sp|P93771|GAOX1_ORYSJ (e_value=5e-14) Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2;; (*TAIR) AT1G52800.1 (e_value=4e-108) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19664044-19665362 FORWARD LENGTH=314;; (*ITAG) Solyc06g067860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38448249-38449744 transcript_region:SL2.40ch06:38448249..38449744- go_terms:GO:0016706 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 **** Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706 NbS00001131g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.33|0.5|4|0|262; (*SWP) sp|Q40062|IDS3_HORVU (e_value=1e-12) 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3;; (*TAIR) AT1G52820.1 (e_value=3e-126) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:19669216-19670321 FORWARD LENGTH=317;; (*ITAG) Solyc06g066830.2.1 (e_value=9e-162) genomic_reference:SL2.40ch06 gene_region:38417340-38419231 transcript_region:SL2.40ch06:38417340..38419231- go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (AHRD V1 ***- B9GL08_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00026673g0002.1 protein AED:0.36 eAED:0.58 QI:0|0|0|1|0|0|2|0|91 NbS00026673g0001.1 protein AED:0.32 eAED:0.65 QI:0|0|0|1|0|0|2|0|74; (*ITAG) Solyc09g015810.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:11026684-11029498 transcript_region:SL2.40ch09:11026684..11029498+ functional_description:"PIF-like transposase (AHRD V1 *--- Q1WIR8_DAUCA)"; NbS00005981g0114.1 protein AED:0.15 eAED:0.15 QI:177|0.85|0.87|1|0.85|0.87|8|250|254 NbS00005981g0115.1 protein AED:0.49 eAED:0.49 QI:144|0|0.5|0.5|0|0.5|2|0|28 NbS00005981g0120.1 protein AED:0.70 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|107 NbS00005981g0122.1 protein AED:0.07 eAED:0.10 QI:0|0.8|0.72|1|0.8|0.54|11|332|900 NbS00005981g0101.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|113 NbS00005981g0104.1 protein AED:0.23 eAED:0.23 QI:0|1|0.77|1|1|1|9|0|851 NbS00017755g0001.1 protein AED:0.04 eAED:0.04 QI:1136|1|1|1|1|1|2|655|155 NbS00016782g0005.1 protein AED:0.40 eAED:0.50 QI:0|0.5|0|1|1|1|3|0|84 NbS00057417g0013.1 protein AED:0.00 eAED:0.00 QI:55|1|1|1|1|1|2|251|167; (*TAIR) AT2G27385.3 (e_value=4e-22) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:11716697-11717285 REVERSE LENGTH=162;; (*ITAG) Solyc06g074260.2.1 (e_value=4e-69) genomic_reference:SL2.40ch06 gene_region:42295490-42302447 transcript_region:SL2.40ch06:42295490..42302447- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMQ8_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00057417g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.11|0|0.7|1|1|10|0|925; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=6e-94) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=5e-95) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc06g074110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42198693-42205529 transcript_region:SL2.40ch06:42198693..42205529- go_terms:GO:0016563,GO:0042803 functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *--- Y1462_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0016563,GO:0042803 NbS00057417g0015.1 protein AED:0.31 eAED:0.35 QI:246|0.63|0.66|1|0.27|0.33|12|0|415; (*SWP) sp|Q9LDU6|ST7R_ARATH (e_value=0.0) 7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1;; (*TAIR) AT1G50430.1 (e_value=0.0) | Symbols: DWF5, PA, LE, ST7R, 7RED | Ergosterol biosynthesis ERG4/ERG24 family | chr1:18682175-18685555 REVERSE LENGTH=432;; (*ITAG) Solyc06g074090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42185371-42191298 transcript_region:SL2.40ch06:42185371..42191298+ go_terms:GO:0047598,GO:0009918 functional_description:"Sterol reductase (AHRD V1 **** A8IA67_CHLRE); contains Interpro domain(s) IPR001171 Ergosterol biosynthesis ERG4/ERG24 "; GO:0047598,GO:0009918 NbS00057417g0001.1 protein AED:0.42 eAED:0.56 QI:0|0|0|1|1|1|2|0|114; (*SWP) sp|P33629|TBA_PRUDU (e_value=4e-26) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=5e-27) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc04g077020.2.1 (e_value=2e-28) genomic_reference:SL2.40ch04 gene_region:59583881-59586708 transcript_region:SL2.40ch04:59583881..59586708+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00057417g0002.1 protein AED:0.39 eAED:0.71 QI:0|0|0|1|1|1|2|0|116; (*SWP) sp|Q96460|TBA2_HORVU (e_value=3e-41) Tubulin alpha-2 chain OS=Hordeum vulgare GN=TUBA2 PE=2 SV=1;; (*TAIR) AT4G14960.1 (e_value=7e-42) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc08g006890.2.1 (e_value=9e-43) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00031836g0004.1 protein AED:0.18 eAED:0.22 QI:0|0.5|0|1|0.5|0.66|3|0|910; (*SWP) sp|Q0WPJ7|RF298_ARATH (e_value=5e-140) Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1;; (*TAIR) AT4G03000.2 (e_value=4e-141) | Symbols: | RING/U-box superfamily protein | chr4:1324602-1327348 FORWARD LENGTH=814;; (*ITAG) Solyc01g080430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72177114-72182165 transcript_region:SL2.40ch01:72177114..72182165+ go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 2 (AHRD V1 *--- Q38JA8_CANFA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00031836g0006.1 protein AED:0.27 eAED:0.55 QI:150|0|0.5|1|0|0|2|0|87 NbS00045727g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|190; (*SWP) sp|P13240|DR206_PEA (e_value=9e-12) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G65870.1 (e_value=9e-67) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189;; (*ITAG) Solyc07g042300.1.1 (e_value=1e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:52755802-52756365 transcript_region:SL2.40ch07:52755802..52756365- functional_description:"Disease resistance response (AHRD V1 ***- D7KM73_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00025043g0009.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|308; (*SWP) sp|Q56XR0|BH071_ARATH (e_value=2e-78) Transcription factor bHLH71 OS=Arabidopsis thaliana GN=BHLH71 PE=1 SV=1;; (*TAIR) AT5G46690.1 (e_value=1e-79) | Symbols: bHLH071 | beta HLH protein 71 | chr5:18945639-18947434 FORWARD LENGTH=327;; (*ITAG) Solyc08g076820.2.1 (e_value=1e-133) genomic_reference:SL2.40ch08 gene_region:57896589-57899605 transcript_region:SL2.40ch08:57896589..57899605+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00025043g0012.1 protein AED:0.31 eAED:0.34 QI:0|0.45|0.41|1|0.27|0.5|12|120|295; (*SWP) sp|B3H6K1|Y4791_ARATH (e_value=7e-27) Uncharacterized protein At4g17910 OS=Arabidopsis thaliana GN=At4g17910 PE=2 SV=2;; (*TAIR) AT4G17910.1 (e_value=5e-28) | Symbols: | transferases, transferring acyl groups | chr4:9951322-9953689 REVERSE LENGTH=434;; (*ITAG) Solyc08g076810.2.1 (e_value=2e-56) genomic_reference:SL2.40ch08 gene_region:57876899-57889537 transcript_region:SL2.40ch08:57876899..57889537+ go_terms:GO:0005515,GO:0032216 functional_description:"GPI-anchored wall transfer protein 1 (AHRD V1 ***- C4JY68_UNCRE); contains Interpro domain(s) IPR009447 GWT1 "; GO:0005515,GO:0032216 NbS00025043g0004.1 protein AED:0.76 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|91 NbS00048102g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.6|1|0.75|1|5|0|251; (*SWP) sp|O70157|TOP3A_MOUSE (e_value=6e-37) DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1;; (*TAIR) AT5G63920.1 (e_value=3e-74) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926;; (*ITAG) Solyc05g014750.2.1 (e_value=1e-171) genomic_reference:SL2.40ch05 gene_region:8888207-8893710 transcript_region:SL2.40ch05:8888207..8893710- go_terms:GO:0003917,GO:0005515 functional_description:"DNA topoisomerase (AHRD V1 *-** B9H4K8_POPTR); contains Interpro domain(s) IPR000380 DNA topoisomerase, type IA, core "; GO:0003917,GO:0005515 NbC25793441g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|98 NbS00003004g0008.1 protein AED:0.17 eAED:0.17 QI:1427|0.5|0.33|0.66|0|0.33|3|515|71 NbS00003004g0009.1 protein AED:0.22 eAED:0.23 QI:0|1|1|1|1|1|3|0|315; (*TAIR) AT5G13100.1 (e_value=2e-144) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4156789-4158235 FORWARD LENGTH=354;; (*ITAG) Solyc05g015980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13141497-13144413 transcript_region:SL2.40ch05:13141497..13144413- functional_description:"Unknown Protein (AHRD V1)"; NbS00038705g0012.1 protein AED:0.05 eAED:0.07 QI:0|0.25|0|0.6|0|0|5|0|787; (*SWP) sp|Q9SII7|PP159_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2;; (*TAIR) AT2G17210.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7485398-7487602 REVERSE LENGTH=715;; (*ITAG) Solyc01g112200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90019581-90021908 transcript_region:SL2.40ch01:90019581..90021908- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L8S9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038705g0009.1 protein AED:0.09 eAED:0.09 QI:448|0.75|0.6|1|0.5|0.6|5|0|919; (*SWP) sp|Q7X9B9|NLP2_ARATH (e_value=0.0) Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3;; (*TAIR) AT4G35270.1 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr4:16777657-16780824 REVERSE LENGTH=963;; (*ITAG) Solyc01g112190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90015884-90019117 transcript_region:SL2.40ch01:90015884..90019117+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 ***- A9DMJ4_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00036842g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0.5|0.66|3|0|353; (*TAIR) AT2G35640.1 (e_value=9e-65) | Symbols: | Homeodomain-like superfamily protein | chr2:14982835-14984182 FORWARD LENGTH=340;; (*ITAG) Solyc02g030460.2.1 (e_value=4e-122) genomic_reference:SL2.40ch02 gene_region:16644438-16646686 transcript_region:SL2.40ch02:16644438..16646686- go_terms:GO:0003700 functional_description:"Sh4 homologue protein (AHRD V1 *-*- B6ZKI3_9POAL); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00042094g0008.1 protein AED:0.11 eAED:0.11 QI:89|1|1|1|1|1|2|722|172 NbS00042094g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|272; (*SWP) sp|Q39227|SMT2_ARATH (e_value=1e-164) 24-methylenesterol C-methyltransferase 2 OS=Arabidopsis thaliana GN=SMT2 PE=1 SV=2;; (*TAIR) AT1G20330.1 (e_value=8e-166) | Symbols: SMT2, CVP1, FRL1 | sterol methyltransferase 2 | chr1:7038968-7040053 REVERSE LENGTH=361;; (*ITAG) Solyc01g111830.2.1 (e_value=1e-174) genomic_reference:SL2.40ch01 gene_region:89755518-89756913 transcript_region:SL2.40ch01:89755518..89756913- go_terms:GO:0003838 functional_description:"24-sterol C-methyltransferase (AHRD V1 **** B0FDL7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0003838 NbS00042094g0014.1 protein AED:0.20 eAED:0.24 QI:0|0.58|0.53|0.92|0.66|0.69|13|68|385; (*TAIR) AT2G16980.2 (e_value=1e-74) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461;; (*ITAG) Solyc07g026930.1.1 (e_value=2e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:32618637-32623272 transcript_region:SL2.40ch07:32618637..32623272+ go_terms:GO:0008493 functional_description:"Tetracycline transporter (AHRD V1 **-* D7L897_ARALY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00042094g0012.1 protein AED:0.63 eAED:0.74 QI:17|0|0|0.5|1|0.5|2|0|140 NbS00015189g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|148; (*SWP) sp|P51091|LDOX_MALDO (e_value=4e-26) Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1;; (*TAIR) AT5G05600.1 (e_value=5e-52) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:1672266-1674602 FORWARD LENGTH=371;; (*ITAG) Solyc10g076660.1.1 (e_value=2e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58933875-58936555 transcript_region:SL2.40ch10:58933875..58936555+ go_terms:GO:0016491,GO:0055114 functional_description:"Anthocyanidin synthase (AHRD V1 **-- Q2QCX4_GOSHI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00028579g0004.1 protein AED:0.25 eAED:0.27 QI:0|0.8|0.81|1|0.86|0.93|16|0|498; (*SWP) sp|Q94AR8|LEUC_ARATH (e_value=0.0) 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1;; (*TAIR) AT4G13430.1 (e_value=0.0) | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase large subunit 1 | chr4:7804194-7807789 REVERSE LENGTH=509;; (*ITAG) Solyc03g005730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00001767g0004.1 protein AED:0.02 eAED:0.04 QI:0|0|0|1|1|1|2|0|403; (*TAIR) AT3G05390.1 (e_value=3e-95) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498 proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:1546585-1547976 REVERSE LENGTH=463;; (*ITAG) Solyc10g052600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:48429755-48430948 transcript_region:SL2.40ch10:48429755..48430948- go_terms:GO:0008152 functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00001767g0002.1 protein AED:0.12 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|317; (*SWP) sp|Q8VYM0|ERF93_ARATH (e_value=6e-36) Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1;; (*TAIR) AT2G31230.1 (e_value=5e-37) | Symbols: ATERF15, ERF15 | ethylene-responsive element binding factor 15 | chr2:13306676-13307407 REVERSE LENGTH=243;; (*ITAG) Solyc05g051200.1.1 (e_value=5e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60588307-60588981 transcript_region:SL2.40ch05:60588307..60588981- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 *-** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00001767g0008.1 protein AED:0.13 eAED:0.14 QI:4|0|0|1|0|0|2|0|140; (*TAIR) AT1G29500.1 (e_value=2e-38) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10321290-10321697 FORWARD LENGTH=135;; (*ITAG) Solyc11g011640.1.1 (e_value=6e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4691662-4692108 transcript_region:SL2.40ch11:4691662..4692108+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00000610g0007.1 protein AED:0.48 eAED:0.84 QI:0|0|0|0.66|1|1|3|0|211 NbS00000610g0018.1 protein AED:0.15 eAED:0.22 QI:0|0.33|0|1|0.66|0.75|4|0|219; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=4e-47) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=3e-48) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=1e-66) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00000610g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|91 NbS00000610g0017.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|113; (*SWP) sp|P93401|NU2M_OENBE (e_value=1e-21) NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera berteriana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=4e-21) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g126010.1.1 (e_value=3e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch00 gene_region:16639340-16639513 transcript_region:SL2.40ch00:16639340..16639513+ functional_description:"Uncharacterized mitochondrial protein AtMg01330 (AHRD V1 ***- M1330_ARATH)"; NbS00009654g0004.1 protein AED:0.14 eAED:0.14 QI:198|0.66|0.75|0.75|0.66|0.75|4|0|124; (*TAIR) AT3G07565.4 (e_value=3e-33) | Symbols: | Protein of unknown function (DUF3755) | chr3:2413823-2415872 FORWARD LENGTH=268;; (*ITAG) Solyc09g020000.2.1 (e_value=6e-37) genomic_reference:SL2.40ch09 gene_region:18083123-18106956 transcript_region:SL2.40ch09:18083123..18106956- functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *-*- Q9SRQ9_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; NbS00000912g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|247; (*SWP) sp|O80338|EF101_ARATH (e_value=9e-43) Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1;; (*TAIR) AT5G47220.1 (e_value=6e-44) | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive element binding factor 2 | chr5:19172023-19172754 REVERSE LENGTH=243;; (*ITAG) Solyc08g078180.1.1 (e_value=3e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00000912g0012.1 protein AED:0.16 eAED:0.23 QI:0|0.83|0.71|1|1|1|7|0|436; (*TAIR) AT1G73805.1 (e_value=1e-125) | Symbols: | Calmodulin binding protein-like | chr1:27745761-27749178 REVERSE LENGTH=451;; (*ITAG) Solyc03g119250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61943066-61945914 transcript_region:SL2.40ch03:61943066..61945914- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** Q9FKL6_ARATH); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00000912g0011.1 protein AED:0.07 eAED:0.07 QI:252|1|1|1|1|1|4|265|672; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-177) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G18390.2 (e_value=1e-178) | Symbols: | Protein kinase superfamily protein | chr1:6327463-6329935 FORWARD LENGTH=654;; (*ITAG) Solyc03g119240.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61938748-61942292 transcript_region:SL2.40ch03:61938748..61942292+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM23_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000912g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|234; (*SWP) sp|O80337|EF100_ARATH (e_value=1e-38) Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2;; (*TAIR) AT4G17500.1 (e_value=1e-39) | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268;; (*ITAG) Solyc08g078180.1.1 (e_value=9e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00010330g0101.1 protein AED:0.04 eAED:0.04 QI:208|0.87|1|1|0.87|0.77|9|191|646 NbS00022313g0003.1 protein AED:0.36 eAED:0.37 QI:0|1|0|1|1|1|2|0|162; (*SWP) sp|Q9LV66|Y5848_ARATH (e_value=3e-18) Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1;; (*TAIR) AT5G48480.1 (e_value=2e-19) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr5:19644814-19645658 FORWARD LENGTH=166;; (*ITAG) Solyc06g007610.2.1 (e_value=2e-47) genomic_reference:SL2.40ch06 gene_region:1605025-1606614 transcript_region:SL2.40ch06:1605025..1606614- go_terms:GO:0003824 functional_description:"Early tobacco anther 1 (AHRD V1 ***- Q84XA0_TOBAC)"; GO:0003824 NbS00022313g0010.1 protein AED:0.12 eAED:0.12 QI:165|0.78|0.73|1|0.78|0.8|15|0|685; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G48460.1 (e_value=0.0) | Symbols: | Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654;; (*ITAG) Solyc09g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:42810385-42818686 transcript_region:SL2.40ch09:42810385..42818686+ go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00022313g0014.1 protein AED:0.25 eAED:0.25 QI:131|0.87|0.88|1|0.87|0.88|9|149|383; (*TAIR) AT5G48470.1 (e_value=1e-174) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19641810-19644127 FORWARD LENGTH=397;; (*ITAG) Solyc09g056160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:42770759-42775847 transcript_region:SL2.40ch09:42770759..42775847+ functional_description:"Genomic DNA chromosome 5 P1 clone MJE7 (AHRD V1 ***- Q9LV67_ARATH)"; NbS00060816g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.77|0.88|1|1|9|356|233; (*SWP) sp|Q2TBG8|UCHL3_BOVIN (e_value=1e-72) Ubiquitin carboxyl-terminal hydrolase isozyme L3 OS=Bos taurus GN=UCHL3 PE=2 SV=1;; (*TAIR) AT4G17510.1 (e_value=4e-129) | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234;; (*ITAG) Solyc06g060850.2.1 (e_value=4e-152) genomic_reference:SL2.40ch06 gene_region:35259703-35265324 transcript_region:SL2.40ch06:35259703..35265324- go_terms:GO:0004843,GO:0004221 functional_description:"Ubiquitin carboxyl-terminal hydrolase isozyme L3 (AHRD V1 **** B6T8R6_MAIZE); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0004843,GO:0004221 NbS00060816g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|134; (*SWP) sp|Q96543|OLE16_BROSE (e_value=5e-26) Oleosin 16 kDa OS=Bromus secalinus GN=OLE16 PE=2 SV=1;; (*TAIR) AT5G51210.1 (e_value=6e-26) | Symbols: OLEO3 | oleosin3 | chr5:20820171-20820706 FORWARD LENGTH=141;; (*ITAG) Solyc06g060840.1.1 (e_value=5e-66) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:35259037-35259441 transcript_region:SL2.40ch06:35259037..35259441+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- Q2TM28_COFCA); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00047765g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|0.85|0.5|0.57|7|0|684; (*TAIR) AT3G51620.2 (e_value=1e-162) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc09g018160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:13379149-13391907 transcript_region:SL2.40ch09:13379149..13391907+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00047765g0005.1 protein AED:0.06 eAED:0.06 QI:829|0.83|0.85|1|1|1|7|298|589; (*SWP) sp|Q9LVL5|WNK4_ARATH (e_value=0.0) Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1;; (*TAIR) AT5G58350.1 (e_value=0.0) | Symbols: WNK4, ZIK2 | with no lysine (K) kinase 4 | chr5:23585505-23587681 FORWARD LENGTH=571;; (*ITAG) Solyc09g018170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:13402635-13407530 transcript_region:SL2.40ch09:13402635..13407530+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00050101g0008.1 protein AED:0.00 eAED:0.00 QI:60|1|1|1|1|1|2|285|133 NbS00013875g0001.1 protein AED:0.31 eAED:0.32 QI:1511|0.83|0.85|1|0.66|0.71|7|0|214; (*TAIR) AT1G09290.1 (e_value=1e-49) | Symbols: | unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:3001682-3003715 REVERSE LENGTH=348;; (*ITAG) Solyc01g020240.2.1 (e_value=1e-88) genomic_reference:SL2.40ch01 gene_region:27975078-27985354 transcript_region:SL2.40ch01:27975078..27985354+ functional_description:"T31J12.1 protein (Fragment) (AHRD V1 ***- Q9ZPZ6_ARATH)"; NbS00013875g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|128; (*SWP) sp|Q9SKC9|NDUB7_ARATH (e_value=5e-32) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=2 SV=1;; (*TAIR) AT2G02050.1 (e_value=4e-33) | Symbols: | NADH-ubiquinone oxidoreductase B18 subunit, putative | chr2:490024-490335 FORWARD LENGTH=103;; (*ITAG) Solyc04g008490.1.1 (e_value=3e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:2117997-2118299 transcript_region:SL2.40ch04:2117997..2118299- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** NDUB7_DICDI); contains Interpro domain(s) IPR008698 NADH:ubiquinone oxidoreductase, B18 subunit "; GO:0008137 NbS00013875g0008.1 protein AED:0.09 eAED:0.09 QI:372|1|1|1|0.8|0.66|6|25|290; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=2e-26) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G40260.1 (e_value=4e-29) | Symbols: | Homeodomain-like superfamily protein | chr2:16816818-16818473 REVERSE LENGTH=410;; (*ITAG) Solyc04g008480.1.1 (e_value=9e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2095913-2099972 transcript_region:SL2.40ch04:2095913..2099972- go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q10S98_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00040906g0007.1 protein AED:0.03 eAED:0.03 QI:50|1|0|1|1|0.5|2|0|52; (*TAIR) AT1G08840.2 (e_value=7e-15) | Symbols: emb2411 | DNA replication helicase, putative | chr1:2829579-2838369 REVERSE LENGTH=1315;; (*ITAG) Solyc01g088380.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74904201-74922866 transcript_region:SL2.40ch01:74904201..74922866- go_terms:GO:0017108 functional_description:"DNA helicase (AHRD V1 ***- A6ZT72_YEAS7); contains Interpro domain(s) IPR014808 DNA replication factor Dna2 "; GO:0017108 NbS00040906g0008.1 protein AED:0.13 eAED:0.13 QI:291|0.91|0.76|1|0.83|0.69|13|332|684; (*SWP) sp|P56821|EIF3B_TOBAC (e_value=0.0) Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1;; (*TAIR) AT5G27640.1 (e_value=0.0) | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712;; (*ITAG) Solyc01g088370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74897598-74903074 transcript_region:SL2.40ch01:74897598..74903074+ go_terms:GO:0032947,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit B (AHRD V1 **** B2VZ72_PYRTR); contains Interpro domain(s) IPR011400 Translation initiation factor eIF-3b "; GO:0032947,GO:0003743 NbS00035112g0006.1 protein AED:0.21 eAED:0.22 QI:0|0.64|0.66|0.86|0.71|0.6|15|0|616; (*SWP) sp|Q8N4Q0|ZADH2_HUMAN (e_value=3e-51) Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1;; (*TAIR) AT1G49670.1 (e_value=0.0) | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=629;; (*ITAG) Solyc01g108150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87266478-87282799 transcript_region:SL2.40ch01:87266478..87282799- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase zinc-binding dehydrogenase family protein (AHRD V1 *--- Q22RF9_TETTH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000401g0014.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|1|1|2|0|182; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=3e-37) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT3G46530.1 (e_value=4e-31) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=4e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00000401g0015.1 protein AED:0.18 eAED:0.18 QI:0|0.71|0.75|1|0.71|0.5|8|417|1064; (*SWP) sp|Q9ZVX1|UBC23_ARATH (e_value=0.0) Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana GN=UBC23 PE=2 SV=1;; (*TAIR) AT2G16920.1 (e_value=0.0) | Symbols: UBC23, PFU2 | ubiquitin-conjugating enzyme 23 | chr2:7334559-7338827 REVERSE LENGTH=1102;; (*ITAG) Solyc01g111680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89632344-89639237 transcript_region:SL2.40ch01:89632344..89639237- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 22 (AHRD V1 ***- D7L888_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00000401g0002.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|176; (*TAIR) AT2G20940.1 (e_value=2e-26) | Symbols: | Protein of unknown function (DUF1279) | chr2:9002264-9002653 REVERSE LENGTH=129;; (*ITAG) Solyc01g111670.2.1 (e_value=2e-57) genomic_reference:SL2.40ch01 gene_region:89630013-89630864 transcript_region:SL2.40ch01:89630013..89630864+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009688 Protein of unknown function DUF1279 "; NbS00000401g0013.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|376; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=9e-49) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=3e-31) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=3e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00000401g0005.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|0|1|0|82 NbS00025517g0003.1 protein AED:0.07 eAED:0.07 QI:276|1|1|1|0.5|0.33|3|204|345; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=1e-31) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.2 (e_value=5e-33) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281;; (*ITAG) Solyc01g095630.2.1 (e_value=4e-117) genomic_reference:SL2.40ch01 gene_region:78600553-78602865 transcript_region:SL2.40ch01:78600553..78602865- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- D3YEX5_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00036707g0001.1 protein AED:0.20 eAED:0.20 QI:464|1|1|1|0.16|0.15|13|880|337; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=5e-97) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=4e-98) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc07g006300.2.1 (e_value=1e-139) genomic_reference:SL2.40ch07 gene_region:1096789-1105446 transcript_region:SL2.40ch07:1096789..1105446+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00012310g0011.1 protein AED:0.22 eAED:0.22 QI:233|0.75|0.6|1|0.75|0.6|5|0|675; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=0.0) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=0.0) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc06g076040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43599876-43605010 transcript_region:SL2.40ch06:43599876..43605010- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00012310g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.42|1|1|7|0|322; (*ITAG) Solyc01g094740.1.1 (e_value=6e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00012310g0006.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|1|1|3|0|285; (*ITAG) Solyc06g076030.2.1 (e_value=8e-71) genomic_reference:SL2.40ch06 gene_region:43590013-43591677 transcript_region:SL2.40ch06:43590013..43591677- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 ***- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00010590g0010.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0|1|0.33|0.5|4|0|353; (*SWP) sp|Q5CD17|NAC77_ORYSJ (e_value=8e-78) NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2;; (*TAIR) AT5G18270.2 (e_value=3e-87) | Symbols: ANAC087 | Arabidopsis NAC domain containing protein 87 | chr5:6041241-6042743 REVERSE LENGTH=335;; (*ITAG) Solyc06g069100.1.1 (e_value=1e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39276715-39281353 transcript_region:SL2.40ch06:39276715..39281353- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IE38_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00010590g0007.1 protein AED:0.32 eAED:0.32 QI:0|0.76|0.57|0.92|0.84|0.85|14|0|504; (*SWP) sp|Q9FLG8|SPNS2_ARATH (e_value=0.0) Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1;; (*TAIR) AT5G64500.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25780511-25783474 FORWARD LENGTH=484;; (*ITAG) Solyc01g106420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86077595-86088101 transcript_region:SL2.40ch01:86077595..86088101+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily (MFS_1) transporter (AHRD V1 **-- Q39GH8_BURS3); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00010590g0110.1 protein AED:0.09 eAED:0.09 QI:0|0.8|0.83|1|1|1|6|319|572 NbS00010590g0111.1 protein AED:0.24 eAED:0.26 QI:0|0.87|0.76|0.94|0.75|0.76|17|0|614 NbS00059044g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|326; (*SWP) sp|A0MES8|ABI4_ARATH (e_value=3e-26) Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2;; (*TAIR) AT2G40220.1 (e_value=2e-27) | Symbols: ABI4, SUN6, SIS5, ISI3, GIN6, SAN5, ATABI4 | Integrase-type DNA-binding superfamily protein | chr2:16796599-16797585 REVERSE LENGTH=328;; (*ITAG) Solyc05g052410.1.1 (e_value=1e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61781895-61783094 transcript_region:SL2.40ch05:61781895..61783094+ go_terms:GO:0016563 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563 NbS00001336g0017.1 protein AED:0.03 eAED:0.03 QI:82|1|1|1|0.66|0.57|7|176|605; (*TAIR) AT1G53210.1 (e_value=0.0) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc12g014110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4926721-4930465 transcript_region:SL2.40ch12:4926721..4930465+ go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00001336g0016.1 protein AED:0.23 eAED:0.26 QI:202|0.57|0.62|1|0.57|0.62|8|349|401; (*SWP) sp|Q9ZRA2|HGD_ARATH (e_value=0.0) Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2;; (*TAIR) AT5G54080.2 (e_value=0.0) | Symbols: HGO | homogentisate 1,2-dioxygenase | chr5:21945920-21948070 FORWARD LENGTH=461;; (*ITAG) Solyc12g014100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4918492-4923176 transcript_region:SL2.40ch12:4918492..4923176+ go_terms:GO:0042802 functional_description:"Homogentisate 1 2-dioxygenase (AHRD V1 ***- D7MTP0_ARALY); contains Interpro domain(s) IPR005708 Homogentisate 1,2-dioxygenase "; GO:0042802 NbS00001336g0004.1 protein AED:0.18 eAED:0.18 QI:449|1|1|1|0.66|0.75|4|530|167; (*ITAG) Solyc12g014120.1.1 (e_value=1e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4931940-4933799 transcript_region:SL2.40ch12:4931940..4933799- functional_description:"Unknown Protein (AHRD V1)"; NbS00001336g0024.1 protein AED:0.29 eAED:0.30 QI:0|0.55|0.3|1|0.55|0.3|10|0|440; (*ITAG) Solyc12g014090.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4901928-4915321 transcript_region:SL2.40ch12:4901928..4915321- functional_description:"Unknown Protein (AHRD V1)"; NbS00001336g0008.1 protein AED:0.58 eAED:0.61 QI:0|0.5|0|0.66|1|1|3|0|148; (*TAIR) AT1G53200.2 (e_value=2e-20) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19840486-19842692 REVERSE LENGTH=474;; (*ITAG) Solyc12g014090.1.1 (e_value=8e-55) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:4901928-4915321 transcript_region:SL2.40ch12:4901928..4915321- functional_description:"Unknown Protein (AHRD V1)"; NbS00012181g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|86 NbS00012181g0005.1 protein AED:0.01 eAED:0.01 QI:22|1|1|1|1|1|3|214|446; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=3e-69) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=4e-78) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc06g051320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31052523-31054682 transcript_region:SL2.40ch06:31052523..31054682+ go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00019913g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|253; (*SWP) sp|Q9SEP2|CHSY_CARAN (e_value=3e-121) Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1;; (*TAIR) AT5G13930.1 (e_value=4e-120) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc09g091510.2.1 (e_value=7e-113) genomic_reference:SL2.40ch09 gene_region:66123066-66125217 transcript_region:SL2.40ch09:66123066..66125217+ go_terms:GO:0008152,GO:0008415,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- Q56I79_9SOLN); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008152,GO:0008415,GO:0009058 NbS00000300g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|651; (*TAIR) AT3G15095.1 (e_value=3e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 9762 Blast hits to 6439 proteins in 764 species: Archae - 77; Bacteria - 1339; Metazoa - 3211; Fungi - 718; Plants - 437; Viruses - 131; Other Eukaryotes - 3849 (source: NCBI BLink). | chr3:5081996-5084050 FORWARD LENGTH=684;; (*ITAG) Solyc07g062730.1.1 (e_value=3e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62648976-62651117 transcript_region:SL2.40ch07:62648976..62651117+ functional_description:"Chloroplast protein HCF243 (AHRD V1 *-*- Q9LIM5_ARATH)"; NbS00000300g0009.1 protein AED:0.30 eAED:0.30 QI:68|1|0.85|1|1|1|7|0|404; (*SWP) sp|Q924D0|RT4I1_MOUSE (e_value=8e-60) Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2;; (*TAIR) AT3G15090.1 (e_value=3e-179) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr3:5076847-5078870 FORWARD LENGTH=366;; (*ITAG) Solyc12g014050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4860592-4867016 transcript_region:SL2.40ch12:4860592..4867016- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Zinc-containing alcohol dehydrogenase (AHRD V1 **-- D3B4R9_POLPA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000300g0011.1 protein AED:0.39 eAED:0.41 QI:0|1|0.5|1|0|0|2|0|89; (*ITAG) Solyc07g062870.2.1 (e_value=2e-21) genomic_reference:SL2.40ch07 gene_region:62729882-62733164 transcript_region:SL2.40ch07:62729882..62733164+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S20 (AHRD V1 *-*- RS20_THEEB); contains Interpro domain(s) IPR002583 Ribosomal protein S20 "; GO:0005840 NbS00000300g0003.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|1|1|2|0|495; (*SWP) sp|Q9LIL5|PP233_ARATH (e_value=1e-166) Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1;; (*TAIR) AT3G15200.1 (e_value=8e-168) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:5117489-5119060 REVERSE LENGTH=523;; (*ITAG) Solyc12g014000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4840081-4841547 transcript_region:SL2.40ch12:4840081..4841547+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L401_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000300g0010.1 protein AED:0.42 eAED:0.53 QI:0|0|0|1|0|0|3|0|69 NbS00000300g0103.1 protein AED:0.37 eAED:0.37 QI:0|0|0.5|1|0|1|2|234|283 NbS00000300g0114.1 protein AED:0.38 eAED:0.38 QI:0|1|0.75|1|0.33|0.5|4|0|253 NbS00000300g0117.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|100 NbS00001955g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|405; (*SWP) sp|Q9MA46|PLA12_ARATH (e_value=4e-139) Galactolipase DONGLE, chloroplastic OS=Arabidopsis thaliana GN=DGL PE=1 SV=1;; (*TAIR) AT1G05800.1 (e_value=3e-140) | Symbols: DGL | alpha/beta-Hydrolases superfamily protein | chr1:1741204-1742619 FORWARD LENGTH=471;; (*ITAG) Solyc09g098460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67542297-67543670 transcript_region:SL2.40ch09:67542297..67543670+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00001955g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.8|0.8|0|0|5|287|157; (*TAIR) AT5G55290.2 (e_value=5e-13) | Symbols: | ATPase, V0 complex, subunit E | chr5:22423037-22424086 REVERSE LENGTH=70;; (*ITAG) Solyc12g098720.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64475986-64478964 transcript_region:SL2.40ch12:64475986..64478964+ go_terms:GO:0033179 functional_description:"ATP synthase subunit H family protein (AHRD V1 ***- D7MKG2_ARALY); contains Interpro domain(s) IPR008389 ATPase, V0 complex, subunit E "; GO:0033179 NbS00001955g0011.1 protein AED:0.18 eAED:0.20 QI:0|0.33|0.28|1|0|0.28|7|331|341; (*ITAG) Solyc09g098450.2.1 (e_value=3e-42) genomic_reference:SL2.40ch09 gene_region:67522113-67533735 transcript_region:SL2.40ch09:67522113..67533735+ go_terms:GO:0006629 functional_description:"Sn1-specific diacylglycerol lipase alpha (AHRD V1 *-*- B0X8K9_CULQU); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00008869g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|344; (*TAIR) AT2G37035.1 (e_value=3e-80) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:15555374-15556780 REVERSE LENGTH=433;; (*ITAG) Solyc09g007950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:1445361-1446737 transcript_region:SL2.40ch09:1445361..1446737+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024642g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|111; (*TAIR) AT1G20430.1 (e_value=3e-32) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7083471-7083821 REVERSE LENGTH=116;; (*ITAG) Solyc12g094480.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63040511-63043542 transcript_region:SL2.40ch12:63040511..63043542- functional_description:"Unknown Protein (AHRD V1)"; NbS00019163g0003.1 protein AED:0.27 eAED:0.27 QI:161|1|1|1|1|1|7|316|258; (*SWP) sp|Q8VYN2|VAP42_ARATH (e_value=1e-99) Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1;; (*TAIR) AT4G21450.1 (e_value=1e-100) | Symbols: | PapD-like superfamily protein | chr4:11426136-11428125 FORWARD LENGTH=295;; (*ITAG) Solyc07g054740.2.1 (e_value=1e-149) genomic_reference:SL2.40ch07 gene_region:60285913-60291302 transcript_region:SL2.40ch07:60285913..60291302- go_terms:GO:0005198 functional_description:"Membrane associated protein-like protein (AHRD V1 ***- Q8LAZ8_ARATH); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00017640g0006.1 protein AED:0.16 eAED:0.20 QI:4|0.5|0.44|1|0.25|0.44|9|642|355; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=5e-117) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=3e-118) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc10g024370.1.1 (e_value=6e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:13627567-13633260 transcript_region:SL2.40ch10:13627567..13633260+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00027808g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|175; (*ITAG) Solyc06g065340.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:37149542-37150216 transcript_region:SL2.40ch06:37149542..37150216- functional_description:"Unknown Protein (AHRD V1)"; NbS00019505g0005.1 protein AED:0.64 eAED:0.75 QI:0|0|0|0.66|0.5|0.66|3|0|99; (*TAIR) AT3G43540.2 (e_value=1e-36) | Symbols: | Protein of unknown function (DUF1350) | chr3:15431063-15433035 FORWARD LENGTH=301;; (*ITAG) Solyc08g075100.2.1 (e_value=2e-52) genomic_reference:SL2.40ch08 gene_region:56422085-56427929 transcript_region:SL2.40ch08:56422085..56427929+ functional_description:"Alpha/beta superfamily hydrolase (AHRD V1 *-*- B9P114_PROMA); contains Interpro domain(s) IPR010765 Protein of unknown function DUF1350 "; NbS00047425g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|0|444; (*TAIR) AT3G51580.1 (e_value=7e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). | chr3:19131167-19133016 REVERSE LENGTH=390;; (*ITAG) Solyc09g015530.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:9627161-9636762 transcript_region:SL2.40ch09:9627161..9636762- functional_description:"Os05g0478200 protein (Fragment) (AHRD V1 *-*- Q0DHB3_ORYSJ)"; NbS00009393g0006.1 protein AED:0.03 eAED:0.03 QI:218|1|1|1|1|1|3|315|265; (*SWP) sp|P46604|HAT22_ARATH (e_value=8e-82) Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1;; (*TAIR) AT4G37790.1 (e_value=6e-83) | Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278;; (*ITAG) Solyc02g091930.2.1 (e_value=6e-135) genomic_reference:SL2.40ch02 gene_region:47728213-47729684 transcript_region:SL2.40ch02:47728213..47729684- go_terms:GO:0030296 functional_description:"Homeobox-leucine zipper protein 22 (AHRD V1 ***- D7MA03_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0030296 NbS00052376g0001.1 protein AED:0.07 eAED:0.07 QI:224|0|0.5|1|0|0.5|2|0|463; (*SWP) sp|Q93V43|TCP2_ARATH (e_value=9e-35) Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1;; (*TAIR) AT4G18390.2 (e_value=7e-36) | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365;; (*ITAG) Solyc08g048390.1.1 (e_value=6e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:39810608-39811771 transcript_region:SL2.40ch08:39810608..39811771+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-** CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00051783g0001.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|220; (*SWP) sp|Q6AZH6|FAF2A_XENLA (e_value=1e-17) FAS-associated factor 2-A OS=Xenopus laevis GN=faf2-a PE=2 SV=1;; (*TAIR) AT4G10790.1 (e_value=1e-56) | Symbols: | UBX domain-containing protein | chr4:6640752-6643035 REVERSE LENGTH=480;; (*ITAG) Solyc08g008510.2.1 (e_value=2e-93) genomic_reference:SL2.40ch08 gene_region:2908419-2918363 transcript_region:SL2.40ch08:2908419..2918363+ functional_description:"Fas-associated factor 1-like protein (AHRD V1 **-- Q5DJU1_CAPAN); contains Interpro domain(s) IPR006577 UAS "; NbS00019597g0014.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|1|0.33|0.75|4|0|201; (*TAIR) AT4G39730.1 (e_value=2e-68) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g096460.2.1 (e_value=9e-97) genomic_reference:SL2.40ch03 gene_region:52001667-52002548 transcript_region:SL2.40ch03:52001667..52002548+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 **-- LOXH1_MOUSE); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00019597g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|378; (*ITAG) Solyc01g094740.1.1 (e_value=7e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019597g0012.1 protein AED:0.00 eAED:0.00 QI:86|1|1|1|1|1|2|306|87 NbS00019597g0002.1 protein AED:0.32 eAED:0.41 QI:0|0|0|0.71|1|1|7|0|298; (*TAIR) AT2G37980.1 (e_value=3e-61) | Symbols: | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638;; (*ITAG) Solyc03g096370.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:51859166-51861779 transcript_region:SL2.40ch03:51859166..51861779+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00019597g0006.1 protein AED:0.39 eAED:0.79 QI:0|0|0|1|1|1|3|0|115 NbS00019597g0019.1 protein AED:0.46 eAED:0.86 QI:0|0|0|1|0|0.33|3|0|104 NbS00019646g0001.1 protein AED:0.28 eAED:0.28 QI:126|1|1|1|0.66|0.71|7|479|277; (*SWP) sp|Q9FV54|DEF1B_SOLLC (e_value=5e-163) Peptide deformylase 1B, chloroplastic OS=Solanum lycopersicum GN=PDF1B PE=2 SV=1;; (*TAIR) AT5G14660.2 (e_value=7e-114) | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B | chr5:4727129-4728671 REVERSE LENGTH=273;; (*ITAG) Solyc02g086680.2.1 (e_value=3e-164) genomic_reference:SL2.40ch02 gene_region:43906309-43909739 transcript_region:SL2.40ch02:43906309..43909739- go_terms:GO:0005515,GO:0008463 functional_description:"Peptide deformylase-like (AHRD V1 **** Q5VNP3_ORYSJ); contains Interpro domain(s) IPR000181 Formylmethionine deformylase "; GO:0005515,GO:0008463 NbS00009265g0104.1 protein AED:0.33 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|135 NbS00009265g0103.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|121 NbS00009265g0116.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|151 NbS00016871g0005.1 protein AED:0.28 eAED:0.28 QI:185|1|0.83|1|0.8|0.83|6|0|714; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=0.0) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc03g031920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8657524-8664052 transcript_region:SL2.40ch03:8657524..8664052- go_terms:GO:0015198 functional_description:"Yellow stripe-like protein 2.1 (Fragment) (AHRD V1 ***- B4ZYE4_BRAJU); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00027299g0010.1 protein AED:0.01 eAED:0.01 QI:399|1|1|1|1|1|4|565|251; (*SWP) sp|P24805|TSJT1_TOBAC (e_value=8e-39) Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1;; (*TAIR) AT5G43830.1 (e_value=6e-139) | Symbols: | Aluminium induced protein with YGL and LRDR motifs | chr5:17622593-17624239 REVERSE LENGTH=251;; (*ITAG) Solyc09g082780.2.1 (e_value=6e-173) genomic_reference:SL2.40ch09 gene_region:63852368-63856111 transcript_region:SL2.40ch09:63852368..63856111+ functional_description:"Asparagine synthetase B (AHRD V1 *-*- A1JQ99_YERE8)"; NbS00027299g0011.1 protein AED:0.17 eAED:0.17 QI:77|1|1|1|1|1|2|132|142; (*SWP) sp|O65759|H2AX_CICAR (e_value=4e-57) Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1;; (*TAIR) AT1G54690.1 (e_value=3e-57) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142;; (*ITAG) Solyc09g082710.2.1 (e_value=4e-62) genomic_reference:SL2.40ch09 gene_region:63814378-63815336 transcript_region:SL2.40ch09:63814378..63815336- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- B9MZP0_POPTR); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00027299g0016.1 protein AED:0.29 eAED:0.32 QI:78|0.91|0.76|1|0.66|0.76|13|0|316; (*SWP) sp|Q96449|DMC1_SOYBN (e_value=0.0) Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G22880.1 (e_value=0.0) | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51) family protein | chr3:8097948-8100740 REVERSE LENGTH=344;; (*ITAG) Solyc09g082790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63856759-63860520 transcript_region:SL2.40ch09:63856759..63860520- go_terms:GO:0005515,GO:0005634,GO:0006259,GO:0017111 functional_description:"DNA repair and recombination protein RAD51 (AHRD V1 **-- A9CT16_ENTBH); contains Interpro domain(s) IPR011940 Meiotic recombinase Dmc1 "; GO:0005515,GO:0005634,GO:0006259,GO:0017111 NbS00019399g0012.1 protein AED:0.12 eAED:0.32 QI:0|0|0|0.66|0.62|0.55|9|0|820; (*TAIR) AT4G12070.1 (e_value=4e-26) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:7231941-7234272 FORWARD LENGTH=483;; (*ITAG) Solyc08g062200.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:47906928-47910556 transcript_region:SL2.40ch08:47906928..47910556+ functional_description:"NB-ARC domain containing protein expressed (AHRD V1 *-*- Q109S4_ORYSJ); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00029639g0004.1 protein AED:0.13 eAED:0.13 QI:275|0.6|0.5|1|0.6|0.66|6|287|417; (*SWP) sp|Q39173|P2_ARATH (e_value=2e-126) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT1G65560.1 (e_value=4e-158) | Symbols: | Zinc-binding dehydrogenase family protein | chr1:24371608-24373673 REVERSE LENGTH=350;; (*ITAG) Solyc05g055700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64392256-64395966 transcript_region:SL2.40ch05:64392256..64395966- go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D5VIT9_CAUST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00032217g0005.1 protein AED:0.01 eAED:0.01 QI:54|1|0.5|1|1|1|2|0|513 NbS00025668g0009.1 protein AED:0.02 eAED:0.04 QI:0|1|0.66|1|0.8|0.83|6|0|451; (*SWP) sp|Q9LYA9|CP41A_ARATH (e_value=0.0) Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic OS=Arabidopsis thaliana GN=CSP41A PE=1 SV=1;; (*TAIR) AT3G63140.1 (e_value=0.0) | Symbols: CSP41A | chloroplast stem-loop binding protein of 41 kDa | chr3:23327006-23328620 REVERSE LENGTH=406;; (*ITAG) Solyc09g065180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58705860-58708565 transcript_region:SL2.40ch09:58705860..58708565+ go_terms:GO:0008266,GO:0003729 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 **-- B7K7X4_CYAP7); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008266,GO:0003729 NbS00025668g0003.1 protein AED:0.11 eAED:0.11 QI:329|1|0.5|1|0|0.5|2|0|534; (*SWP) sp|Q9LE82|RAGP1_ARATH (e_value=0.0) RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1;; (*TAIR) AT3G63130.2 (e_value=0.0) | Symbols: RANGAP1 | RAN GTPase activating protein 1 | chr3:23325108-23326715 FORWARD LENGTH=535;; (*ITAG) Solyc09g065190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:58708850-58710454 transcript_region:SL2.40ch09:58708850..58710454- go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase-activating protein 1 (AHRD V1 **-* A7M8K3_SOLTU); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; GO:0005515,GO:0005098 NbS00025668g0008.1 protein AED:0.17 eAED:0.26 QI:210|1|0.75|1|0.66|0.75|4|0|399; (*TAIR) AT1G03160.1 (e_value=1e-119) | Symbols: FZL | FZO-like | chr1:761321-766053 FORWARD LENGTH=912;; (*ITAG) Solyc09g065160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:58667016-58680192 transcript_region:SL2.40ch09:58667016..58680192- go_terms:GO:0009228,GO:0005525 functional_description:"Dynamin family protein (AHRD V1 *--- D0MDN4_RHOM4); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0009228,GO:0005525 NbS00023916g0005.1 protein AED:0.23 eAED:0.23 QI:271|1|1|1|0.90|0.95|22|381|630; (*SWP) sp|Q9M4G5|PGMP_SOLTU (e_value=0.0) Phosphoglucomutase, chloroplastic OS=Solanum tuberosum GN=PGMP PE=2 SV=1;; (*TAIR) AT5G51820.1 (e_value=0.0) | Symbols: PGM, ATPGMP, PGM1, STF1 | phosphoglucomutase | chr5:21063531-21067933 REVERSE LENGTH=623;; (*ITAG) Solyc03g006870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1382913-1390635 transcript_region:SL2.40ch03:1382913..1390635+ go_terms:GO:0004614 functional_description:"Phosphoglucomutase (AHRD V1 **** C1MKX8_MICPS); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614 NbS00023916g0106.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|1|1|1|3|0|352 NbS00044412g0010.1 protein AED:0.17 eAED:0.17 QI:285|1|1|1|0.81|0.75|12|232|615; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT4G33430.1 (e_value=0.0) | Symbols: BAK1, RKS10, SERK3, ELG, ATSERK3, ATBAK1 | BRI1-associated receptor kinase | chr4:16086654-16090288 REVERSE LENGTH=615;; (*ITAG) Solyc10g047140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35371188-35382060 transcript_region:SL2.40ch10:35371188..35382060- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00044412g0011.1 protein AED:0.30 eAED:0.30 QI:217|1|0.91|1|0.72|0.75|12|394|347; (*SWP) sp|Q38942|RAE1L_ARATH (e_value=0.0) Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2;; (*TAIR) AT1G80670.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:30320809-30323543 REVERSE LENGTH=349;; (*ITAG) Solyc10g047000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:34606639-34615943 transcript_region:SL2.40ch10:34606639..34615943- go_terms:GO:0008017 functional_description:"mRNA export factor (AHRD V1 **-- B5X9N9_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008017 NbS00010948g0002.1 protein AED:0.14 eAED:0.28 QI:135|0|0.5|1|0|0.5|2|0|355; (*TAIR) AT3G57400.1 (e_value=6e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21238547-21239971 FORWARD LENGTH=474;; (*ITAG) Solyc10g079390.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60259172-60260260 transcript_region:SL2.40ch10:60259172..60260260+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010948g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|345; (*TAIR) AT4G23540.1 (e_value=7e-74) | Symbols: | ARM repeat superfamily protein | chr4:12280547-12286420 REVERSE LENGTH=1131;; (*ITAG) Solyc04g015940.2.1 (e_value=2e-172) genomic_reference:SL2.40ch04 gene_region:6462961-6486905 transcript_region:SL2.40ch04:6462961..6486905+ go_terms:GO:0005488 functional_description:"Ribosomal RNA-processing protein (AHRD V1 *--- C1GNI2_PARBA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00012984g0006.1 protein AED:0.29 eAED:0.29 QI:102|1|1|1|0.77|0.8|10|182|367; (*SWP) sp|Q9LFG2|DAPF_ARATH (e_value=3e-171) Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1;; (*TAIR) AT3G53580.1 (e_value=3e-172) | Symbols: | diaminopimelate epimerase family protein | chr3:19864784-19866907 FORWARD LENGTH=362;; (*ITAG) Solyc09g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:488084-495891 transcript_region:SL2.40ch09:488084..495891- go_terms:GO:0008837 functional_description:"Diaminopimelate epimerase family protein (AHRD V1 **** D7LUJ8_ARALY); contains Interpro domain(s) IPR001653 Diaminopimelate epimerase "; GO:0008837 NbS00000675g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc07g032700.1.1 (e_value=7e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00000675g0015.1 protein AED:0.27 eAED:0.27 QI:190|1|0.75|1|1|1|4|75|213; (*SWP) sp|Q9M392|RTNLL_ARATH (e_value=1e-48) Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1;; (*TAIR) AT3G54120.1 (e_value=9e-50) | Symbols: | Reticulon family protein | chr3:20041269-20042133 REVERSE LENGTH=203;; (*ITAG) Solyc09g013110.2.1 (e_value=9e-103) genomic_reference:SL2.40ch09 gene_region:5513447-5516464 transcript_region:SL2.40ch09:5513447..5516464+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7LUQ5_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00000675g0019.1 protein AED:0.36 eAED:0.36 QI:131|1|1|1|0.85|0.75|8|0|232; (*SWP) sp|Q8LBZ4|OTU_ARATH (e_value=3e-18) OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1;; (*TAIR) AT2G38025.1 (e_value=3e-93) | Symbols: | Cysteine proteinases superfamily protein | chr2:15915239-15916692 REVERSE LENGTH=234;; (*ITAG) Solyc09g013090.2.1 (e_value=5e-141) genomic_reference:SL2.40ch09 gene_region:5495093-5499967 transcript_region:SL2.40ch09:5495093..5499967+ functional_description:"OTU-like cysteine protease family protein expressed (AHRD V1 **-- Q10NL4_ORYSJ); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00000675g0021.1 protein AED:0.17 eAED:0.18 QI:219|1|0.75|1|0.66|0.25|4|0|474; (*SWP) sp|Q5ZHZ4|HAKAI_CHICK (e_value=6e-13) E3 ubiquitin-protein ligase Hakai OS=Gallus gallus GN=CBLL1 PE=2 SV=1;; (*TAIR) AT5G01160.1 (e_value=6e-110) | Symbols: | RING/U-box superfamily protein | chr5:54280-55727 FORWARD LENGTH=360;; (*ITAG) Solyc09g013120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5516497-5524689 transcript_region:SL2.40ch09:5516497..5524689- go_terms:GO:0005622 functional_description:"E3 ubiquitin-protein ligase Hakai (AHRD V1 *--- C0H8T4_SALSA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00000675g0017.1 protein AED:0.22 eAED:0.22 QI:286|0.87|0.88|1|1|1|9|320|304; (*SWP) sp|Q9N2I9|UCP3_CANFA (e_value=2e-88) Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1;; (*TAIR) AT3G54110.1 (e_value=0.0) | Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 | plant uncoupling mitochondrial protein 1 | chr3:20038890-20040996 FORWARD LENGTH=306;; (*ITAG) Solyc09g011920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5178746-5183896 transcript_region:SL2.40ch09:5178746..5183896+ go_terms:GO:0017077 functional_description:"Mitochondrial uncoupling protein (AHRD V1 ***- O24391_SOLTU); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier IPR001993 Mitochondrial substrate carrier "; GO:0017077 NbS00000675g0023.1 protein AED:0.37 eAED:0.46 QI:0|0|0|0.75|0|0.25|4|0|187; (*TAIR) AT5G01150.1 (e_value=7e-14) | Symbols: | Protein of unknown function (DUF674) | chr5:51988-53649 FORWARD LENGTH=501;; (*ITAG) Solyc09g011910.2.1 (e_value=7e-47) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00000675g0024.1 protein AED:0.36 eAED:0.52 QI:0|0|0|1|0|0.33|3|0|145 NbS00000675g0025.1 protein AED:0.55 eAED:0.71 QI:0|0|0|1|0|0|2|0|88 NbS00060348g0006.1 protein AED:0.36 eAED:0.39 QI:12|0.25|0.4|1|1|1|5|0|420; (*ITAG) Solyc01g090850.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:76318364-76327292 transcript_region:SL2.40ch01:76318364..76327292+ go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00060348g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|245; (*ITAG) Solyc01g090850.2.1 (e_value=3e-88) genomic_reference:SL2.40ch01 gene_region:76318364-76327292 transcript_region:SL2.40ch01:76318364..76327292+ go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00006074g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.6|0.5|1|0.4|0.66|6|130|294; (*SWP) sp|Q9FJV5|KAN4_ARATH (e_value=4e-50) Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1;; (*TAIR) AT5G42630.1 (e_value=3e-51) | Symbols: KAN4, ATS | Homeodomain-like superfamily protein | chr5:17073997-17075747 REVERSE LENGTH=276;; (*ITAG) Solyc04g079600.2.1 (e_value=4e-105) genomic_reference:SL2.40ch04 gene_region:61614216-61617588 transcript_region:SL2.40ch04:61614216..61617588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor-like (AHRD V1 *-** Q84NK2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00020083g0012.1 protein AED:0.07 eAED:0.07 QI:113|1|1|1|0.85|0.87|8|524|229; (*SWP) sp|P80269|NDUS8_SOLTU (e_value=2e-150) NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G79010.1 (e_value=7e-132) | Symbols: | Alpha-helical ferredoxin | chr1:29725138-29726933 REVERSE LENGTH=222;; (*ITAG) Solyc01g109620.2.1 (e_value=1e-155) genomic_reference:SL2.40ch01 gene_region:88275740-88282020 transcript_region:SL2.40ch01:88275740..88282020- go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase subunit I (AHRD V1 **** D5BPB0_PUNMI); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0008137 NbS00020083g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.77|0.8|0.9|0.88|0.9|10|0|428; (*SWP) sp|P54654|CAP_DICDI (e_value=2e-76) Adenylyl cyclase-associated protein OS=Dictyostelium discoideum GN=cap PE=1 SV=1;; (*TAIR) AT4G34490.1 (e_value=0.0) | Symbols: ATCAP1, CAP 1, CAP1 | cyclase associated protein 1 | chr4:16484896-16487355 REVERSE LENGTH=476;; (*ITAG) Solyc10g051340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47444808-47452925 transcript_region:SL2.40ch10:47444808..47452925- go_terms:GO:0003785 functional_description:"Adenylyl cyclase-associated protein (AHRD V1 ***- B9H0Q2_POPTR); contains Interpro domain(s) IPR001837 Adenylate cyclase-associated CAP "; GO:0003785 NbS00020083g0006.1 protein AED:0.31 eAED:0.37 QI:0|0|0|0.8|1|1|5|0|248; (*TAIR) AT2G18470.1 (e_value=3e-12) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc10g051330.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:47441251-47444002 transcript_region:SL2.40ch10:47441251..47444002+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021449g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|0|184; (*TAIR) AT5G24130.1 (e_value=2e-60) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8162247-8163825 FORWARD LENGTH=316;; (*ITAG) Solyc03g007340.2.1 (e_value=1e-88) genomic_reference:SL2.40ch03 gene_region:1902871-1905696 transcript_region:SL2.40ch03:1902871..1905696- functional_description:"Unknown Protein (AHRD V1)"; NbS00021449g0015.1 protein AED:0.03 eAED:0.10 QI:0|1|0.33|1|1|1|3|56|352; (*SWP) sp|Q700C7|SPCH_ARATH (e_value=2e-87) Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1;; (*TAIR) AT5G53210.1 (e_value=2e-88) | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21586606-21588941 REVERSE LENGTH=364;; (*ITAG) Solyc03g007410.2.1 (e_value=4e-133) genomic_reference:SL2.40ch03 gene_region:1952298-1954788 transcript_region:SL2.40ch03:1952298..1954788+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00021449g0016.1 protein AED:0.10 eAED:0.11 QI:0|1|0.6|1|1|1|5|0|537; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=5e-36) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT5G24120.1 (e_value=0.0) | Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr5:8157794-8159746 REVERSE LENGTH=517;; (*ITAG) Solyc03g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1915174-1919474 transcript_region:SL2.40ch03:1915174..1919474- go_terms:GO:0003899,GO:0003677 functional_description:"RNA polymerase sigma factor (AHRD V1 *-** C7QR23_CYAP0); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0003899,GO:0003677 NbS00021449g0022.1 protein AED:0.12 eAED:0.12 QI:288|0.83|0.85|1|0.16|0|7|347|233; (*SWP) sp|Q6NQN5|SWET3_ARATH (e_value=9e-92) Bidirectional sugar transporter SWEET3 OS=Arabidopsis thaliana GN=SWEET3 PE=2 SV=1;; (*TAIR) AT5G53190.1 (e_value=7e-93) | Symbols: SWEET3, AtSWEET3 | Nodulin MtN3 family protein | chr5:21572417-21574284 REVERSE LENGTH=263;; (*ITAG) Solyc03g007360.2.1 (e_value=9e-139) genomic_reference:SL2.40ch03 gene_region:1910345-1912252 transcript_region:SL2.40ch03:1910345..1912252- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7MSV3_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00021449g0019.1 protein AED:0.10 eAED:0.10 QI:128|1|1|1|0.33|0.5|4|803|202; (*SWP) sp|Q9FL62|WRK30_ARATH (e_value=4e-41) Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1;; (*TAIR) AT5G24110.1 (e_value=3e-42) | Symbols: WRKY30, ATWRKY30 | WRKY DNA-binding protein 30 | chr5:8153416-8154633 REVERSE LENGTH=303;; (*ITAG) Solyc03g007380.1.1 (e_value=4e-96) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:1929376-1930601 transcript_region:SL2.40ch03:1929376..1930601+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 27 (AHRD V1 ***- C9DI16_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00021449g0003.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|764; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=3e-124) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=2e-125) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc03g007350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1907101-1909338 transcript_region:SL2.40ch03:1907101..1909338+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00036119g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.87|1|0.42|0.37|8|112|520; (*SWP) sp|Q9SQH6|PIN6_ARATH (e_value=0.0) Probable auxin efflux carrier component 6 OS=Arabidopsis thaliana GN=PIN6 PE=2 SV=2;; (*TAIR) AT1G77110.1 (e_value=0.0) | Symbols: PIN6 | Auxin efflux carrier family protein | chr1:28970855-28974408 FORWARD LENGTH=570;; (*ITAG) Solyc06g059730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33975970-33981307 transcript_region:SL2.40ch06:33975970..33981307- go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier (AHRD V1 **** Q71T12_MOMCH); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00002780g0009.1 protein AED:0.33 eAED:0.33 QI:0|0.25|0|0.4|1|0.8|5|0|243; (*ITAG) Solyc06g051390.2.1 (e_value=2e-44) genomic_reference:SL2.40ch06 gene_region:31221832-31228128 transcript_region:SL2.40ch06:31221832..31228128+ go_terms:GO:0000166 functional_description:"Tomosyn-like protein (AHRD V1 **-- A9RPV0_PHYPA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00054099g0011.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc09g010840.1.1 (e_value=9e-12) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00054099g0009.1 protein AED:0.90 eAED:0.91 QI:0|0|0|0.5|1|1|2|0|91 NbS00054099g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.93|0.88|1|1|0.94|17|505|824; (*SWP) sp|Q9ZUI6|AP1G2_ARATH (e_value=0.0) AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2;; (*TAIR) AT1G60070.1 (e_value=0.0) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc05g005780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:593461-608931 transcript_region:SL2.40ch05:593461..608931+ go_terms:GO:0042802,GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0042802,GO:0030276 NbS00054099g0010.1 protein AED:0.34 eAED:0.47 QI:0|0|0|1|0|0|2|0|78 NbS00003469g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|181; (*TAIR) AT1G32260.1 (e_value=2e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11640760-11641784 REVERSE LENGTH=202;; (*ITAG) Solyc08g076510.2.1 (e_value=1e-90) genomic_reference:SL2.40ch08 gene_region:57666470-57670136 transcript_region:SL2.40ch08:57666470..57670136- functional_description:"Unknown Protein (AHRD V1)"; NbS00007751g0004.1 protein AED:0.12 eAED:0.12 QI:168|0.88|0.8|1|1|1|10|403|445; (*SWP) sp|P54776|PRS6A_SOLLC (e_value=0.0) 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1;; (*TAIR) AT3G05530.1 (e_value=0.0) | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A ATPase 5A | chr3:1603540-1605993 FORWARD LENGTH=424;; (*ITAG) Solyc01g099760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81668247-81673265 transcript_region:SL2.40ch01:81668247..81673265+ go_terms:GO:0004175 functional_description:"26S protease regulatory subunit 6A homolog (AHRD V1 ***- PRS6A_SOLLC); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0004175 NbS00007751g0010.1 protein AED:0.09 eAED:0.15 QI:0|0|0|1|0|0|5|0|456; (*ITAG) Solyc01g111480.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00019563g0006.1 protein AED:0.22 eAED:0.22 QI:916|1|0.75|1|0.66|1|4|0|51 NbS00019563g0001.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0.28|0.71|1|1|7|0|418; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=6e-152) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=4e-153) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc12g096580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63777456-63782098 transcript_region:SL2.40ch12:63777456..63782098+ go_terms:GO:0016020 functional_description:"Potassium transporter (AHRD V1 ***- Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00024673g0004.1 protein AED:0.16 eAED:0.21 QI:56|0|0|0.8|0.25|0.2|5|0|334; (*ITAG) Solyc09g072680.1.1 (e_value=4e-137) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60789850-60791031 transcript_region:SL2.40ch09:60789850..60791031- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00022526g0001.1 protein AED:0.20 eAED:0.36 QI:0|0|0|1|0|0|3|0|158 NbS00003291g0003.1 protein AED:0.07 eAED:0.07 QI:121|0.83|0.85|1|1|1|7|382|226; (*TAIR) AT3G07030.1 (e_value=4e-47) | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405;; (*ITAG) Solyc09g061710.2.1 (e_value=7e-68) genomic_reference:SL2.40ch09 gene_region:55796984-55801356 transcript_region:SL2.40ch09:55796984..55801356- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00003868g0003.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|745; (*SWP) sp|O54922|EXOC7_RAT (e_value=4e-18) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G13990.1 (e_value=0.0) | Symbols: ATEXO70C2, EXO70C2 | exocyst subunit exo70 family protein C2 | chr5:4514680-4516767 REVERSE LENGTH=695;; (*ITAG) Solyc02g094370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49496509-49498653 transcript_region:SL2.40ch02:49496509..49498653- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00003868g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|0.75|0.33|0.25|4|0|339; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=2e-87) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G18610.2 (e_value=2e-91) | Symbols: | Protein kinase superfamily protein | chr5:6192736-6195371 FORWARD LENGTH=513;; (*ITAG) Solyc02g094380.1.1 (e_value=6e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49499332-49501925 transcript_region:SL2.40ch02:49499332..49501925+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00003868g0105.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|106 NbS00003868g0106.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|80 NbS00003868g0113.1 protein AED:0.24 eAED:0.24 QI:330|0.75|0.66|0.88|0.62|0.55|9|0|533 NbS00003868g0114.1 protein AED:0.06 eAED:0.06 QI:313|0.84|0.78|1|0.61|0.64|14|329|724 NbS00003868g0116.1 protein AED:0.06 eAED:0.07 QI:214|1|0.75|1|1|1|4|0|796 NbS00003868g0115.1 protein AED:0.15 eAED:0.15 QI:195|1|0.75|1|0.66|1|4|0|483 NbS00003868g0209.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.83|0.85|7|380|767 NbS00003868g0203.1 protein AED:0.13 eAED:0.13 QI:0|0.85|0.62|1|1|1|8|0|1076 NbS00057673g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|101; (*SWP) sp|Q8LHP0|ELOF1_ORYSJ (e_value=1e-40) Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1;; (*TAIR) AT5G46030.1 (e_value=1e-35) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18670531-18671138 FORWARD LENGTH=120;; (*ITAG) Solyc02g077440.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:36959365-36961353 transcript_region:SL2.40ch02:36959365..36961353+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbS00006010g0008.1 protein AED:0.10 eAED:0.10 QI:196|1|1|1|1|1|4|372|172; (*SWP) sp|Q6NPF9|TRXY1_ARATH (e_value=2e-51) Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana GN=At1g76760 PE=2 SV=1;; (*TAIR) AT1G76760.1 (e_value=2e-52) | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811873-28812948 REVERSE LENGTH=172;; (*ITAG) Solyc04g071560.2.1 (e_value=6e-76) genomic_reference:SL2.40ch04 gene_region:56133865-56137308 transcript_region:SL2.40ch04:56133865..56137308+ go_terms:GO:0045454 functional_description:"Thioredoxin y (AHRD V1 ***- B9GTH5_POPTR); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00006010g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|228; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-35) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G01610.1 (e_value=1e-59) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr2:274124-274792 REVERSE LENGTH=222;; (*ITAG) Solyc10g076730.1.1 (e_value=5e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00009056g0007.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0|1|1|1|3|0|595; (*SWP) sp|Q84N38|PVIP_NICBE (e_value=0.0) OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1;; (*TAIR) AT5G48160.2 (e_value=0.0) | Symbols: OBE2 | Protein of unknown function (DUF1423) | chr5:19528019-19529820 REVERSE LENGTH=574;; (*ITAG) Solyc05g054180.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63284096-63288543 transcript_region:SL2.40ch05:63284096..63288543+ go_terms:GO:0008270 functional_description:"Potyvirus VPg interacting protein (AHRD V1 **-- B0ZZ79_ARAHY); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; GO:0008270 NbS00009056g0003.1 protein AED:0.60 eAED:0.74 QI:0|0|0|0.66|1|1|3|0|84 NbS00008181g0005.1 protein AED:0.11 eAED:0.13 QI:0|0.75|0.6|1|1|1|5|0|955; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=0.0) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=0.0) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00008181g0017.1 protein AED:0.28 eAED:0.36 QI:158|0.6|0.5|1|0.8|1|6|0|365; (*SWP) sp|Q5SPR8|ESCO2_DANRE (e_value=1e-16) N-acetyltransferase ESCO2 OS=Danio rerio GN=esco2 PE=2 SV=1;; (*TAIR) AT4G31400.1 (e_value=2e-73) | Symbols: CTF7 | damaged DNA binding;DNA-directed DNA polymerases | chr4:15237411-15239266 FORWARD LENGTH=345;; (*ITAG) Solyc01g007160.2.1 (e_value=2e-159) genomic_reference:SL2.40ch01 gene_region:1728460-1733199 transcript_region:SL2.40ch01:1728460..1733199+ go_terms:GO:0006281 functional_description:"N-acetyltransferase ESCO1 (AHRD V1 **-- B6TTW6_MAIZE); contains Interpro domain(s) IPR001126 DNA-repair protein, UmuC-like "; GO:0006281 NbS00034447g0001.1 protein AED:0.04 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc01g102420.1.1 (e_value=3e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:83003378-83003704 transcript_region:SL2.40ch01:83003378..83003704+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038717g0011.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|1|1|2|0|184; (*SWP) sp|Q67YE6|SAP12_ARATH (e_value=5e-54) Zinc finger AN1 domain-containing stress-associated protein 12 OS=Arabidopsis thaliana GN=SAP12 PE=2 SV=2;; (*TAIR) AT3G28210.1 (e_value=4e-55) | Symbols: PMZ, SAP12 | zinc finger (AN1-like) family protein | chr3:10520585-10521223 FORWARD LENGTH=186;; (*ITAG) Solyc02g087210.2.1 (e_value=7e-78) genomic_reference:SL2.40ch02 gene_region:44252813-44254055 transcript_region:SL2.40ch02:44252813..44254055+ go_terms:GO:0003676,GO:0005515 functional_description:"Zinc finger AN1 domain-containing stress-associated protein 12 (AHRD V1 ***- SAP12_ARATH); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0003676,GO:0005515 NbS00038717g0017.1 protein AED:0.21 eAED:0.21 QI:18|0|0.25|0.75|0|0.5|4|0|237; (*ITAG) Solyc02g087220.2.1 (e_value=9e-77) genomic_reference:SL2.40ch02 gene_region:44253844-44257761 transcript_region:SL2.40ch02:44253844..44257761- functional_description:"Protein bicaudal C homolog 1-B (AHRD V1 *--- BIC1B_XENLA); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00038717g0018.1 protein AED:0.44 eAED:0.46 QI:0|0.8|0.66|1|0.8|0.5|6|0|114; (*SWP) sp|O49856|FTRC_SOYBN (e_value=5e-75) Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic OS=Glycine max GN=FTRC PE=2 SV=1;; (*TAIR) AT2G04700.1 (e_value=2e-75) | Symbols: | ferredoxin thioredoxin reductase catalytic beta chain family protein | chr2:1646961-1648345 FORWARD LENGTH=146;; (*ITAG) Solyc02g087230.2.1 (e_value=2e-81) genomic_reference:SL2.40ch02 gene_region:44259650-44265112 transcript_region:SL2.40ch02:44259650..44265112- go_terms:GO:0055114 functional_description:"Ferredoxin-thioredoxin reductase catalytic chain (AHRD V1 ***- B6TNR7_MAIZE); contains Interpro domain(s) IPR004209 Ferredoxin thioredoxin reductase, beta subunit "; GO:0055114 NbS00038717g0019.1 protein AED:0.30 eAED:0.50 QI:483|0|0.5|1|0|0|2|0|115; (*ITAG) Solyc02g087250.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0010181,GO:0003723 NbS00038717g0012.1 protein AED:0.68 eAED:0.84 QI:0|0|0|0.66|1|1|3|0|90; (*TAIR) AT1G70180.2 (e_value=8e-17) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:26426768-26429097 FORWARD LENGTH=460;; (*ITAG) Solyc02g087220.2.1 (e_value=1e-34) genomic_reference:SL2.40ch02 gene_region:44253844-44257761 transcript_region:SL2.40ch02:44253844..44257761- functional_description:"Protein bicaudal C homolog 1-B (AHRD V1 *--- BIC1B_XENLA); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00041744g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.16|1|0.8|0.83|6|0|342; (*SWP) sp|Q9SYT0|ANXD1_ARATH (e_value=7e-117) Annexin D1 OS=Arabidopsis thaliana GN=ANN1 PE=1 SV=1;; (*TAIR) AT1G35720.1 (e_value=5e-118) | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:13225304-13226939 FORWARD LENGTH=317;; (*ITAG) Solyc04g073990.2.1 (e_value=2e-172) genomic_reference:SL2.40ch04 gene_region:57610227-57612650 transcript_region:SL2.40ch04:57610227..57612650- go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- Q42657_CAPAN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00041744g0010.1 protein AED:0.04 eAED:0.04 QI:406|1|0.83|1|0.8|0.66|6|0|660; (*SWP) sp|Q9C9R6|PUM7_ARATH (e_value=2e-135) Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2;; (*TAIR) AT1G78160.1 (e_value=2e-136) | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650;; (*ITAG) Solyc04g073980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57605468-57610119 transcript_region:SL2.40ch04:57605468..57610119+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio family protein (AHRD V1 *-*- D8U4V9_VOLCA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00043892g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|100 NbS00043892g0006.1 protein AED:0.29 eAED:0.29 QI:186|0.87|0.88|1|0.62|0.77|9|0|406; (*SWP) sp|Q8LFA9|METL2_ARATH (e_value=1e-102) Methyltransferase-like protein 2 OS=Arabidopsis thaliana GN=At1g19340 PE=2 SV=2;; (*TAIR) AT1G19340.1 (e_value=1e-103) | Symbols: | Methyltransferase MT-A70 family protein | chr1:6684798-6686798 FORWARD LENGTH=414;; (*ITAG) Solyc04g079950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61862713-61866231 transcript_region:SL2.40ch04:61862713..61866231+ go_terms:GO:0032259,GO:0006139 functional_description:"MT-A70 family (AHRD V1 *-*- C9S7M7_VERA1); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0032259,GO:0006139 NbS00043892g0007.1 protein AED:0.72 eAED:0.81 QI:0|0|0|0.66|0|0.33|3|0|140 NbS00008478g0003.1 protein AED:0.00 eAED:0.00 QI:261|1|1|1|1|1|3|506|79; (*SWP) sp|Q43513|MT2Y_SOLLC (e_value=2e-22) Metallothionein-like protein type 2 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT5G02380.1 (e_value=3e-12) | Symbols: MT2B | metallothionein 2B | chr5:506755-507164 REVERSE LENGTH=77;; (*ITAG) Solyc06g076140.2.1 (e_value=1e-23) genomic_reference:SL2.40ch06 gene_region:43665663-43666838 transcript_region:SL2.40ch06:43665663..43666838+ go_terms:GO:0005507 functional_description:"Metallothionein-like protein (AHRD V1 ***- A9YTZ3_SOLTU); contains Interpro domain(s) IPR000347 Plant metallothionein, family 15 "; GO:0005507 NbS00017009g0003.1 protein AED:0.30 eAED:0.33 QI:0|0.2|0.27|0.63|0.8|0.90|11|181|356; (*SWP) sp|Q8GY84|RH10_ARATH (e_value=2e-101) DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2;; (*TAIR) AT5G60990.1 (e_value=1e-102) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:24546601-24549148 REVERSE LENGTH=456;; (*ITAG) Solyc10g007550.2.1 (e_value=2e-123) genomic_reference:SL2.40ch10 gene_region:1854624-1864124 transcript_region:SL2.40ch10:1854624..1864124- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8B7Q7_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00039981g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|267; (*SWP) sp|O81313|IND_ARATH (e_value=4e-43) Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3;; (*TAIR) AT4G00120.1 (e_value=3e-44) | Symbols: IND1, GT140, IND, EDA33 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:42601-43197 REVERSE LENGTH=198;; (*ITAG) Solyc11g005780.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:637406-638257 transcript_region:SL2.40ch11:637406..638257+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- D3Y275_BRARP); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0006355,GO:0045449 NbS00024840g0009.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|0|0|3|0|303; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=3e-69) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=2e-70) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g122350.2.1 (e_value=2e-163) genomic_reference:SL2.40ch03 gene_region:64280253-64282856 transcript_region:SL2.40ch03:64280253..64282856+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00003092g0016.1 protein AED:0.02 eAED:0.02 QI:152|0.85|0.75|1|0.71|0.5|8|0|2368; (*SWP) sp|Q8BKX6|SMG1_MOUSE (e_value=2e-128) Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1 SV=3;; (*TAIR) AT1G50030.1 (e_value=1e-61) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2481;; (*ITAG) Solyc01g109080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbS00003092g0013.1 protein AED:0.13 eAED:0.12 QI:0|0.5|0.29|0.94|0.81|0.82|17|0|1609; (*ITAG) Solyc01g109080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbS00046599g0005.1 protein AED:0.16 eAED:0.16 QI:232|0.75|0.77|1|0.62|0.55|9|335|689; (*SWP) sp|O14357|GPI1_SCHPO (e_value=7e-19) N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi1 PE=2 SV=1;; (*TAIR) AT3G57170.1 (e_value=1e-128) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560;; (*ITAG) Solyc04g017700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7768414-7774996 transcript_region:SL2.40ch04:7768414..7774996- go_terms:GO:0016021 functional_description:"N-acetylglucosaminyl transferase component Gpi1 (AHRD V1 *--- C5FLP9_NANOT); contains Interpro domain(s) IPR007720 N-acetylglucosaminyl transferase component "; GO:0016021 NbS00017146g0002.1 protein AED:0.32 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|499; (*SWP) sp|Q6RY07|CHIA_RAT (e_value=7e-47) Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1;; (*TAIR) AT4G19810.1 (e_value=1e-71) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:112239-113536 transcript_region:SL2.40ch07:112239..113536+ go_terms:GO:0008084,GO:0008843 functional_description:"Chitinase-like protein (AHRD V1 ***- O81861_ARATH); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008084,GO:0008843 NbS00017146g0006.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|99; (*SWP) sp|Q91Z98|CH3L4_MOUSE (e_value=5e-13) Chitinase-3-like protein 4 OS=Mus musculus GN=Chi3l4 PE=1 SV=2;; (*TAIR) AT4G19810.1 (e_value=2e-22) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005080.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:112239-113536 transcript_region:SL2.40ch07:112239..113536+ go_terms:GO:0008084,GO:0008843 functional_description:"Chitinase-like protein (AHRD V1 ***- O81861_ARATH); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008084,GO:0008843 NbS00017146g0003.1 protein AED:0.04 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|380; (*SWP) sp|Q9WTV1|CH3L1_RAT (e_value=5e-39) Chitinase-3-like protein 1 OS=Rattus norvegicus GN=Chi3l1 PE=2 SV=3;; (*TAIR) AT4G19810.1 (e_value=3e-73) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:113980-115328 transcript_region:SL2.40ch07:113980..115328- go_terms:GO:0008843 functional_description:"Chitinase A (AHRD V1 ***- Q4W6L6_CYCRE); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008843 NbS00036890g0010.1 protein AED:0.26 eAED:0.27 QI:9|0.33|0.5|0.75|0.33|0.25|4|269|237; (*SWP) sp|O49997|1433E_TOBAC (e_value=3e-156) 14-3-3-like protein E OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G38480.1 (e_value=1e-146) | Symbols: GRF3, RCI1 | general regulatory factor 3 | chr5:15410277-15411285 FORWARD LENGTH=255;; (*ITAG) Solyc03g034180.2.1 (e_value=7e-155) genomic_reference:SL2.40ch03 gene_region:10153209-10155317 transcript_region:SL2.40ch03:10153209..10155317- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00036890g0012.1 protein AED:0.30 eAED:0.30 QI:0|1|1|1|0.88|0.8|10|241|341; (*SWP) sp|Q55403|Y575_SYNY3 (e_value=8e-26) Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0575 PE=4 SV=1;; (*TAIR) AT5G38660.1 (e_value=1e-99) | Symbols: APE1 | acclimation of photosynthesis to environment | chr5:15473285-15475497 REVERSE LENGTH=286;; (*ITAG) Solyc03g034170.2.1 (e_value=4e-131) genomic_reference:SL2.40ch03 gene_region:10147034-10152883 transcript_region:SL2.40ch03:10147034..10152883+ functional_description:"Uncharacterized conserved membrane protein (AHRD V1 *--- A5GSC9_SYNR3)"; NbS00036890g0014.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|169; (*SWP) sp|P82412|RRP3_SPIOL (e_value=4e-60) 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1;; (*TAIR) AT1G68590.1 (e_value=3e-54) | Symbols: | Ribosomal protein PSRP-3/Ycf65 | chr1:25757593-25758169 REVERSE LENGTH=166;; (*ITAG) Solyc03g034190.2.1 (e_value=2e-93) genomic_reference:SL2.40ch03 gene_region:10158743-10161172 transcript_region:SL2.40ch03:10158743..10161172+ go_terms:GO:0009536 functional_description:"Ribosomal protein PSRP-3/Ycf65 (AHRD V1 *-*- B5W261_SPIMA); contains Interpro domain(s) IPR006924 Ribosomal protein, PSRP-3/Ycf65 "; GO:0009536 NbS00040365g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|520; (*SWP) sp|P48417|CP74_LINUS (e_value=0.0) Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1;; (*TAIR) AT5G42650.1 (e_value=0.0) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc11g069800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51512528-51514060 transcript_region:SL2.40ch11:51512528..51514060- go_terms:GO:0019825,GO:0009978 functional_description:"cytochrome P450"; GO:0019825,GO:0009978 NbS00040365g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.7|0.72|1|0|0.09|11|546|241; (*SWP) sp|Q54P70|Y4757_DICDI (e_value=1e-14) OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2;; (*TAIR) AT5G04250.2 (e_value=5e-50) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc11g069810.1.1 (e_value=7e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51520907-51527993 transcript_region:SL2.40ch11:51520907..51527993- functional_description:"OTU domain containing protein (AHRD V1 *-*- D3B1E5_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00044477g0005.1 protein AED:0.14 eAED:0.13 QI:33|0.75|0.2|1|0.75|0.6|5|763|181; (*SWP) sp|Q38961|SNM1_ARATH (e_value=3e-71) DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1;; (*TAIR) AT3G26680.3 (e_value=2e-72) | Symbols: SNM1 | DNA repair metallo-beta-lactamase family protein | chr3:9801309-9803517 FORWARD LENGTH=484;; (*ITAG) Solyc08g067250.2.1 (e_value=7e-31) genomic_reference:SL2.40ch08 gene_region:53497454-53507180 transcript_region:SL2.40ch08:53497454..53507180+ functional_description:"DNA cross-link repair 1A protein (AHRD V1 *-*- B0XKM0_CULQU); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00026742g0008.1 protein AED:0.34 eAED:0.35 QI:108|0.37|0.22|1|0.62|0.66|9|0|554; (*TAIR) AT1G58370.1 (e_value=1e-165) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc12g088210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62093027-62098315 transcript_region:SL2.40ch12:62093027..62098315+ go_terms:GO:0016798,GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016798,GO:0005975 NbS00026742g0001.1 protein AED:0.42 eAED:0.54 QI:0|-1|0|1|-1|1|1|96|242; (*SWP) sp|P10478|XYNZ_CLOTH (e_value=4e-12) Endo-1,4-beta-xylanase Z OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=xynZ PE=1 SV=3;; (*TAIR) AT1G58370.1 (e_value=4e-112) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc12g088210.1.1 (e_value=4e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62093027-62098315 transcript_region:SL2.40ch12:62093027..62098315+ go_terms:GO:0016798,GO:0005975 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016798,GO:0005975 NbS00005081g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.75|1|1|1|4|0|155; (*SWP) sp|Q9M2S7|FK201_ARATH (e_value=3e-59) Peptidyl-prolyl cis-trans isomerase FKBP20-1 OS=Arabidopsis thaliana GN=FKBP20-1 PE=2 SV=1;; (*TAIR) AT3G55520.1 (e_value=2e-60) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:20594177-20595128 FORWARD LENGTH=190;; (*ITAG) Solyc04g011620.2.1 (e_value=1e-73) genomic_reference:SL2.40ch04 gene_region:4053218-4058441 transcript_region:SL2.40ch04:4053218..4058441- go_terms:GO:0005528 functional_description:"FK506-binding protein 5(PEPTIDYL-PROLYL CIS-TRANS ISOMERASE) (AHRD V1 **-* Q98S76_GUITH); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00002033g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|151; (*TAIR) AT3G25910.1 (e_value=3e-36) | Symbols: | Protein of unknown function (DUF1644) | chr3:9489836-9490954 FORWARD LENGTH=372;; (*ITAG) Solyc06g067970.1.1 (e_value=8e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38517926-38518774 transcript_region:SL2.40ch06:38517926..38518774- functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00020032g0002.1 protein AED:0.00 eAED:0.00 QI:12|1|1|1|1|1|3|376|83; (*TAIR) AT5G18920.1 (e_value=1e-19) | Symbols: | Cox19-like CHCH family protein | chr5:6310095-6310623 FORWARD LENGTH=77; NbS00041385g0001.1 protein AED:0.11 eAED:0.11 QI:431|1|1|1|0.57|0.75|8|534|715; (*SWP) sp|Q9SJ56|BLH1_ARATH (e_value=3e-91) BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1;; (*TAIR) AT2G35940.3 (e_value=2e-92) | Symbols: BLH1 | BEL1-like homeodomain 1 | chr2:15089171-15091699 REVERSE LENGTH=680;; (*ITAG) Solyc11g068950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50583105-50587838 transcript_region:SL2.40ch11:50583105..50587838- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00007382g0003.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0|1|1|1|4|0|620; (*SWP) sp|Q9ZV25|P2C23_ARATH (e_value=4e-163) Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1;; (*TAIR) AT2G28890.1 (e_value=3e-164) | Symbols: PLL4 | poltergeist like 4 | chr2:12405799-12408062 REVERSE LENGTH=654;; (*ITAG) Solyc09g010780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4070839-4073437 transcript_region:SL2.40ch09:4070839..4073437- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00013667g0016.1 protein AED:0.11 eAED:0.11 QI:198|1|0.88|1|0.87|0.88|9|513|533; (*SWP) sp|Q9MBA1|CAO_ARATH (e_value=0.0) Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1;; (*TAIR) AT1G44446.1 (e_value=0.0) | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr1:16848664-16851152 REVERSE LENGTH=536;; (*ITAG) Solyc06g060310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34673695-34677472 transcript_region:SL2.40ch06:34673695..34677472- go_terms:GO:0010277 functional_description:"Chlorophyllide a oxygenase (AHRD V1 **** B6TZB6_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0010277 NbS00013667g0020.1 protein AED:0.35 eAED:0.35 QI:128|0.7|0.81|1|0.8|0.81|11|0|449; (*SWP) sp|Q9XF61|PDI_DATGL (e_value=0.0) Protein disulfide-isomerase OS=Datisca glomerata GN=PDI PE=2 SV=1;; (*TAIR) AT1G21750.1 (e_value=0.0) | Symbols: ATPDIL1-1, ATPDI5, PDI5, PDIL1-1 | PDI-like 1-1 | chr1:7645767-7648514 FORWARD LENGTH=501;; (*ITAG) Solyc06g060290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34649921-34655100 transcript_region:SL2.40ch06:34649921..34655100- go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** B1Q2X4_SOYBN); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00013667g0018.1 protein AED:0.11 eAED:0.12 QI:417|0.6|0.83|1|0.8|0.66|6|378|1111; (*TAIR) AT1G21740.1 (e_value=2e-172) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr1:7641580-7645078 FORWARD LENGTH=953;; (*ITAG) Solyc06g060270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34636335-34648511 transcript_region:SL2.40ch06:34636335..34648511+ functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00013667g0003.1 protein AED:0.22 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|132; (*TAIR) AT1G44414.1 (e_value=2e-38) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:16847781-16848086 FORWARD LENGTH=101;; (*ITAG) Solyc06g060300.1.1 (e_value=5e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:34672906-34673223 transcript_region:SL2.40ch06:34672906..34673223+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031789g0003.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.33|0.66|1|1|3|0|276; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=1e-59) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G28500.1 (e_value=9e-104) | Symbols: ANAC073, SND2, NAC073 | NAC domain containing protein 73 | chr4:14083014-14084266 FORWARD LENGTH=305;; (*ITAG) Solyc07g053590.2.1 (e_value=5e-133) genomic_reference:SL2.40ch07 gene_region:59332888-59335327 transcript_region:SL2.40ch07:59332888..59335327- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MYC7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00016267g0003.1 protein AED:0.26 eAED:0.26 QI:463|1|1|1|1|1|6|257|328; (*SWP) sp|B8B5U8|BAHL2_ORYSI (e_value=2e-147) Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica GN=OsI_27296 PE=3 SV=1;; (*TAIR) AT1G02860.1 (e_value=9e-148) | Symbols: NLA, BAH1 | SPX (SYG1/Pho81/XPR1) domain-containing protein | chr1:635474-637083 FORWARD LENGTH=335;; (*ITAG) Solyc09g075040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62331419-62335924 transcript_region:SL2.40ch09:62331419..62335924- go_terms:GO:0004842 functional_description:"Tripartite motif-containing 22 (Predicted) (AHRD V1 *--- B0VXD4_CALJA); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0004842 NbS00001147g0001.1 protein AED:0.00 eAED:0.01 QI:223|1|0.5|1|0|0|2|0|693; (*SWP) sp|Q8LF20|CAP2_ARATH (e_value=0.0) Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2;; (*TAIR) AT2G25430.1 (e_value=0.0) | Symbols: | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related | chr2:10822716-10824677 FORWARD LENGTH=653;; (*ITAG) Solyc08g059660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:41665374-41667284 transcript_region:SL2.40ch08:41665374..41667284- go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *--* Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00001147g0005.1 protein AED:0.15 eAED:0.31 QI:0|0|0|1|1|1|2|0|166; (*ITAG) Solyc03g114260.1.1 (e_value=4e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58344558-58345355 transcript_region:SL2.40ch03:58344558..58345355+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00001147g0002.1 protein AED:0.27 eAED:0.27 QI:1352|0.92|0.93|1|0.35|0.46|15|195|253; (*SWP) sp|C0LGH2|Y1561_ARATH (e_value=3e-49) Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2;; (*TAIR) AT1G56145.2 (e_value=7e-54) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:21008225-21013934 REVERSE LENGTH=1039;; (*ITAG) Solyc07g066550.2.1 (e_value=3e-53) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00037119g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.66|0.83|1|0.83|6|0|173; (*SWP) sp|Q9C9G4|ENDO2_ARATH (e_value=8e-52) Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1;; (*TAIR) AT1G68290.1 (e_value=6e-53) | Symbols: ENDO 2 | endonuclease 2 | chr1:25596718-25598264 FORWARD LENGTH=290;; (*ITAG) Solyc05g009430.2.1 (e_value=2e-62) genomic_reference:SL2.40ch05 gene_region:3608430-3611465 transcript_region:SL2.40ch05:3608430..3611465+ go_terms:GO:0000014,GO:0043765 functional_description:"Endonuclease (AHRD V1 **** A5A339_SOYBN); contains Interpro domain(s) IPR003154 S1/P1 nuclease "; GO:0000014,GO:0043765 NbS00012997g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|277; (*TAIR) AT4G14805.1 (e_value=3e-18) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:8502374-8503199 REVERSE LENGTH=219;; (*ITAG) Solyc09g082310.1.1 (e_value=2e-44) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:63470351-63472793 transcript_region:SL2.40ch09:63470351..63472793+ go_terms:GO:0006364 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016140 Bifunctional inhibitor/plant lipid transfer protein/seed storage "; GO:0006364 NbS00012997g0015.1 protein AED:0.00 eAED:0.00 QI:24|1|1|1|1|1|2|158|139 NbS00012997g0014.1 protein AED:0.26 eAED:0.26 QI:141|1|1|1|1|1|3|174|204; (*SWP) sp|O23714|PSB2A_ARATH (e_value=1e-130) Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1;; (*TAIR) AT3G22630.1 (e_value=9e-132) | Symbols: PBD1, PRCGB | 20S proteasome beta subunit D1 | chr3:8009709-8010774 REVERSE LENGTH=204;; (*ITAG) Solyc09g082320.2.1 (e_value=2e-148) genomic_reference:SL2.40ch09 gene_region:63473246-63478374 transcript_region:SL2.40ch09:63473246..63478374- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9RTN1_RICCO); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00003729g0004.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.25|1|1|4|0|146 NbS00003729g0003.1 protein AED:0.73 eAED:0.81 QI:0|0|0|0.5|1|1|6|0|445 NbS00003729g0002.1 protein AED:0.63 eAED:0.82 QI:0|0|0|1|1|1|2|0|124 NbS00039979g0001.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|297; (*SWP) sp|Q93XM7|MCAT_ARATH (e_value=3e-161) Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1;; (*TAIR) AT5G46800.1 (e_value=2e-162) | Symbols: BOU | Mitochondrial substrate carrier family protein | chr5:18988779-18989810 REVERSE LENGTH=300;; (*ITAG) Solyc10g079200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60110983-60112071 transcript_region:SL2.40ch10:60110983..60112071- go_terms:GO:0016020 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- B1N662_SOLLC); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00054157g0004.1 protein AED:0.08 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|171; (*TAIR) AT1G27990.1 (e_value=2e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9752799-9753919 REVERSE LENGTH=271;; (*ITAG) Solyc05g015890.2.1 (e_value=4e-63) genomic_reference:SL2.40ch05 gene_region:12668873-12669963 transcript_region:SL2.40ch05:12668873..12669963- functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 **-- Q9FHB8_ARATH)"; NbS00011985g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|0|0|2|0|40; (*TAIR) AT5G45170.1 (e_value=9e-15) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18270555-18273129 REVERSE LENGTH=372;; (*ITAG) Solyc02g069410.2.1 (e_value=7e-22) genomic_reference:SL2.40ch02 gene_region:33885107-33893316 transcript_region:SL2.40ch02:33885107..33893316- functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 *-*- Q10I42_ORYSJ)"; NbS00017299g0011.1 protein AED:0.07 eAED:0.10 QI:0|0.5|0.33|1|0|0|3|0|211; (*SWP) sp|Q9ZVQ6|P2B10_ARATH (e_value=1e-59) F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1;; (*TAIR) AT2G02360.1 (e_value=7e-61) | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10 | chr2:619699-620736 REVERSE LENGTH=272;; (*ITAG) Solyc12g098190.1.1 (e_value=4e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64152328-64154070 transcript_region:SL2.40ch12:64152328..64154070- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00017299g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|167; (*SWP) sp|Q9ZVQ6|P2B10_ARATH (e_value=6e-32) F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1;; (*TAIR) AT2G02360.1 (e_value=4e-33) | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10 | chr2:619699-620736 REVERSE LENGTH=272;; (*ITAG) Solyc12g098200.1.1 (e_value=1e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64155954-64157706 transcript_region:SL2.40ch12:64155954..64157706- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00017299g0010.1 protein AED:0.17 eAED:0.32 QI:39|0|0|1|0.25|0|5|0|242; (*SWP) sp|Q9ZVQ6|P2B10_ARATH (e_value=3e-22) F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1;; (*TAIR) AT2G02360.1 (e_value=2e-23) | Symbols: AtPP2-B10, PP2-B10 | phloem protein 2-B10 | chr2:619699-620736 REVERSE LENGTH=272;; (*ITAG) Solyc12g098190.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64152328-64154070 transcript_region:SL2.40ch12:64152328..64154070- functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018162g0010.1 protein AED:0.12 eAED:0.12 QI:157|0.66|0.75|1|0.33|0.75|4|544|319; (*SWP) sp|P93227|FNTA_SOLLC (e_value=0.0) Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1;; (*TAIR) AT3G59380.1 (e_value=7e-108) | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnesyltransferase A | chr3:21944209-21945781 FORWARD LENGTH=326;; (*ITAG) Solyc06g073390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41616510-41621899 transcript_region:SL2.40ch06:41616510..41621899+ go_terms:GO:0004660 functional_description:"Farnesyltransferase/type I geranylgeranyltransferase alpha subunit (AHRD V1 **** Q6EZ49_CATRO); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0004660 NbS00018162g0013.1 protein AED:0.11 eAED:0.11 QI:45|1|0|1|1|1|2|75|41 NbS00018162g0012.1 protein AED:0.23 eAED:0.28 QI:0|0.5|0|1|0.25|0.2|5|0|162; (*SWP) sp|O35980|NTHL1_MOUSE (e_value=2e-20) Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1;; (*TAIR) AT2G31450.2 (e_value=2e-52) | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=377;; (*ITAG) Solyc06g073400.2.1 (e_value=1e-68) genomic_reference:SL2.40ch06 gene_region:41622096-41629236 transcript_region:SL2.40ch06:41622096..41629236- go_terms:GO:0034042,GO:0034043 functional_description:"Endonuclease III-like protein 1 (AHRD V1 ***- B6U0P3_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0034042,GO:0034043 NbS00018162g0011.1 protein AED:0.36 eAED:0.54 QI:0|0|0.33|1|0|0|3|0|88; (*TAIR) AT2G31450.2 (e_value=1e-19) | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=377;; (*ITAG) Solyc06g073400.2.1 (e_value=3e-28) genomic_reference:SL2.40ch06 gene_region:41622096-41629236 transcript_region:SL2.40ch06:41622096..41629236- go_terms:GO:0034042,GO:0034043 functional_description:"Endonuclease III-like protein 1 (AHRD V1 ***- B6U0P3_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0034042,GO:0034043 NbS00018928g0004.1 protein AED:0.07 eAED:0.07 QI:225|1|1|1|0.75|0.6|5|508|253; (*SWP) sp|P0DH85|REM10_ARATH (e_value=9e-19) B3 domain-containing protein REM10 OS=Arabidopsis thaliana GN=REM10 PE=2 SV=1;; (*TAIR) AT2G24700.1 (e_value=7e-20) | Symbols: | Transcriptional factor B3 family protein | chr2:10513049-10515288 REVERSE LENGTH=555;; (*ITAG) Solyc04g064830.2.1 (e_value=1e-124) genomic_reference:SL2.40ch04 gene_region:55121110-55123177 transcript_region:SL2.40ch04:55121110..55123177+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00018928g0015.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|184; (*ITAG) Solyc11g013210.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00018928g0024.1 protein AED:0.05 eAED:0.05 QI:8|0.66|0.42|1|0.83|0.57|7|0|452; (*TAIR) AT1G75150.1 (e_value=1e-37) | Symbols: | unknown protein; Has 38228 Blast hits to 24529 proteins in 1168 species: Archae - 169; Bacteria - 4103; Metazoa - 14594; Fungi - 5866; Plants - 1861; Viruses - 317; Other Eukaryotes - 11318 (source: NCBI BLink). | chr1:28204709-28208512 REVERSE LENGTH=784;; (*ITAG) Solyc07g025380.2.1 (e_value=2e-145) genomic_reference:SL2.40ch07 gene_region:27596841-27602681 transcript_region:SL2.40ch07:27596841..27602681- functional_description:"Unknown Protein (AHRD V1)"; NbS00018928g0022.1 protein AED:0.30 eAED:0.30 QI:146|1|1|1|0.87|0.92|25|260|887; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=0.0) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.1 (e_value=0.0) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=887;; (*ITAG) Solyc12g088990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62594071-62609745 transcript_region:SL2.40ch12:62594071..62609745- functional_description:"Exocyst complex component 1 (AHRD V1 ***- Q5PPR2_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00018928g0001.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.25|1|1|4|0|263; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=9e-19) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.2 (e_value=7e-20) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=888;; (*ITAG) Solyc07g025170.2.1 (e_value=1e-28) genomic_reference:SL2.40ch07 gene_region:26176702-26189084 transcript_region:SL2.40ch07:26176702..26189084- functional_description:"Exocyst complex component 1 (AHRD V1 *-*- Q6P1Y9_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00001446g0001.1 protein AED:0.04 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|331; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=6e-12) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G14000.1 (e_value=2e-14) | Symbols: anac084, NAC084 | NAC domain containing protein 84 | chr5:4518177-4519034 FORWARD LENGTH=206;; (*ITAG) Solyc07g053680.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59444350-59444996 transcript_region:SL2.40ch07:59444350..59444996- go_terms:GO:0045449 functional_description:"NAC domain-containing protein 67 (AHRD V1 ***- B6T3X1_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00019855g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|72 NbS00019855g0001.1 protein AED:0.33 eAED:0.35 QI:0|0.4|0.33|1|0.8|0.66|6|1273|165; (*TAIR) AT4G14570.1 (e_value=4e-14) | Symbols: | acylaminoacyl-peptidase-related | chr4:8362586-8366525 FORWARD LENGTH=764;; (*ITAG) Solyc03g005340.2.1 (e_value=2e-34) genomic_reference:SL2.40ch03 gene_region:196973-204060 transcript_region:SL2.40ch03:196973..204060- go_terms:GO:0004252 functional_description:"Prolyl endopeptidase (AHRD V1 *-** C0NUP9_AJECG); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00019855g0002.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|437; (*SWP) sp|Q9XIW0|CIPK7_ARATH (e_value=1e-142) CBL-interacting serine/threonine-protein kinase 7 OS=Arabidopsis thaliana GN=CIPK7 PE=1 SV=1;; (*TAIR) AT3G23000.1 (e_value=7e-144) | Symbols: CIPK7, SnRK3.10, PKS7, ATSRPK1, ATSR2 | CBL-interacting protein kinase 7 | chr3:8172654-8173943 FORWARD LENGTH=429;; (*ITAG) Solyc09g083100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64180760-64182064 transcript_region:SL2.40ch09:64180760..64182064+ go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 20 (AHRD V1 **** C4P7W9_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00025115g0006.1 protein AED:0.18 eAED:0.20 QI:0|1|0.66|1|1|1|3|0|301; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-88) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G19000.2 (e_value=2e-53) | Symbols: | Homeodomain-like superfamily protein | chr1:6561335-6562684 REVERSE LENGTH=285;; (*ITAG) Solyc03g113620.2.1 (e_value=5e-113) genomic_reference:SL2.40ch03 gene_region:57743381-57744982 transcript_region:SL2.40ch03:57743381..57744982- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B2CZJ3_CAPAN); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00025115g0008.1 protein AED:0.53 eAED:0.54 QI:0|0|0|1|0|0|2|0|124; (*ITAG) Solyc03g113160.1.1 (e_value=9e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57466321-57467190 transcript_region:SL2.40ch03:57466321..57467190- functional_description:"F-box domain containing protein expressed (AHRD V1 ***- Q2R244_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00025115g0009.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|92; (*ITAG) Solyc03g115420.1.1 (e_value=1e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59193429-59194628 transcript_region:SL2.40ch03:59193429..59194628- functional_description:"F-box domain containing protein (AHRD V1 ***- Q2QXK7_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00020023g0010.1 protein AED:0.35 eAED:0.35 QI:241|1|0.66|1|1|1|3|0|344; (*SWP) sp|O14270|FHL1_SCHPO (e_value=3e-16) Fork head transcription factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fhl1 PE=2 SV=2;; (*TAIR) AT3G07220.1 (e_value=8e-79) | Symbols: | SMAD/FHA domain-containing protein | chr3:2297968-2299407 FORWARD LENGTH=320;; (*ITAG) Solyc09g059500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50169017-50179394 transcript_region:SL2.40ch09:50169017..50179394+ go_terms:GO:0016563 functional_description:"Forkhead box K1 (AHRD V1 *--- C1K2Z9_ORYLA); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0016563 NbS00020023g0009.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0.25|4|0|553; (*SWP) sp|Q67A25|NCS_THLFG (e_value=1e-18) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*TAIR) AT3G07210.1 (e_value=2e-80) | Symbols: | unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:2293000-2295119 REVERSE LENGTH=547;; (*ITAG) Solyc09g059470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50128936-50132747 transcript_region:SL2.40ch09:50128936..50132747- go_terms:GO:0003824 functional_description:"Os01g0917200 protein (Fragment) (AHRD V1 ***- Q0JGL5_ORYSJ); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbC26100015g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|172; (*SWP) sp|P21568|CYPH_SOLLC (e_value=8e-106) Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1;; (*TAIR) AT2G16600.1 (e_value=6e-94) | Symbols: ROC3 | rotamase CYP 3 | chr2:7200862-7201383 FORWARD LENGTH=173;; (*ITAG) Solyc10g054910.1.1 (e_value=2e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51540879-51541397 transcript_region:SL2.40ch10:51540879..51541397+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9XF12_SOLTU); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbC26100015g0005.1 protein AED:0.02 eAED:0.18 QI:0|0|0|1|0|0|2|0|237; (*TAIR) AT4G38770.1 (e_value=2e-20) | Symbols: PRP4, ATPRP4 | proline-rich protein 4 | chr4:18097009-18098448 REVERSE LENGTH=448;; (*ITAG) Solyc10g054900.1.1 (e_value=2e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51531598-51532532 transcript_region:SL2.40ch10:51531598..51532532+ functional_description:"Proline-rich protein (AHRD V1 ***- Q9M6T7_NICGL); contains Interpro domain(s) IPR010616 Protein of unknown function DUF1210 "; NbS00006488g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc02g089480.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:45872849-45873214 transcript_region:SL2.40ch02:45872849..45873214- functional_description:"Unknown Protein (AHRD V1)"; NbS00009237g0010.1 protein AED:0.11 eAED:0.11 QI:208|0.8|0.72|1|0.7|0.81|11|413|926; (*SWP) sp|A1Z9E2|LIN54_DROME (e_value=7e-27) Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1 SV=1;; (*TAIR) AT3G22780.1 (e_value=1e-52) | Symbols: TSO1, ATTSO1 | Tesmin/TSO1-like CXC domain-containing protein | chr3:8048927-8052058 FORWARD LENGTH=695;; (*ITAG) Solyc08g067150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53283144-53291920 transcript_region:SL2.40ch08:53283144..53291920+ functional_description:"Tesmin/TSO1-like CXC domain containing protein expressed (AHRD V1 *--- Q10G99_ORYSJ); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbS00014792g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|403; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=2e-163) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=2e-164) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1567768-1569141 transcript_region:SL2.40ch01:1567768..1569141+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00044706g0001.1 protein AED:0.11 eAED:0.11 QI:26|0.75|0.76|1|0.91|0.84|13|349|779; (*SWP) sp|Q94C37|HDG2_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1;; (*TAIR) AT1G05230.4 (e_value=0.0) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=721;; (*ITAG) Solyc10g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:239692-245015 transcript_region:SL2.40ch10:239692..245015- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 ***- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00009548g0005.1 protein AED:0.21 eAED:0.21 QI:191|1|1|1|1|1|14|492|755; (*SWP) sp|Q8VZD4|DEG15_ARATH (e_value=0.0) Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2;; (*TAIR) AT1G28320.1 (e_value=0.0) | Symbols: DEG15 | protease-related | chr1:9920673-9924347 REVERSE LENGTH=709;; (*ITAG) Solyc02g077900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37307822-37315353 transcript_region:SL2.40ch02:37307822..37315353+ go_terms:GO:0004175 functional_description:"Peroxisomal leader peptide-processing protease (AHRD V1 *--- TYSD1_HUMAN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004175 NbS00027198g0005.1 protein AED:0.22 eAED:0.22 QI:205|0.83|0.71|1|0.5|0.57|7|409|597; (*TAIR) AT3G14075.2 (e_value=0.0) | Symbols: | Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 | chr3:4663819-4666338 REVERSE LENGTH=642;; (*ITAG) Solyc03g122290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64213482-64217360 transcript_region:SL2.40ch03:64213482..64217360+ go_terms:GO:0006629 functional_description:"Lipase family protein expressed (AHRD V1 ***- Q2QNT9_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00027975g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.6|1|0.75|0.6|5|0|847; (*SWP) sp|Q9FF61|SM3L1_ARATH (e_value=0.0) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1;; (*TAIR) AT5G05130.1 (e_value=0.0) | Symbols: | DNA/RNA helicase protein | chr5:1512173-1514918 FORWARD LENGTH=862;; (*ITAG) Solyc12g020110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14050996-14056328 transcript_region:SL2.40ch12:14050996..14056328+ go_terms:GO:0003702,GO:0016563,GO:0016887 functional_description:"DNA repair protein rad5 (AHRD V1 **-- C5FQX2_NANOT); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0003702,GO:0016563,GO:0016887 NbS00027975g0001.1 protein AED:0.21 eAED:0.22 QI:0|1|0|1|1|1|2|0|378; (*SWP) sp|Q9SUK9|P2C55_ARATH (e_value=3e-119) Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2;; (*TAIR) AT4G16580.1 (e_value=2e-120) | Symbols: | Protein phosphatase 2C family protein | chr4:9341152-9342555 REVERSE LENGTH=467;; (*ITAG) Solyc12g005190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:129527-130660 transcript_region:SL2.40ch12:129527..130660+ go_terms:GO:0004721,GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 ***- C1BT38_9MAXI); contains Interpro domain(s) IPR010822 Sporulation stage II, protein E C-terminal "; GO:0004721,GO:0003824 NbS00027975g0010.1 protein AED:0.27 eAED:0.27 QI:239|0.83|1|1|1|1|7|375|293; (*SWP) sp|Q9C6I6|ETFA_ARATH (e_value=7e-125) Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA PE=1 SV=1;; (*TAIR) AT1G50940.1 (e_value=6e-126) | Symbols: ETFALPHA | electron transfer flavoprotein alpha | chr1:18878038-18879939 REVERSE LENGTH=363;; (*ITAG) Solyc12g005200.1.1 (e_value=8e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:131226-135857 transcript_region:SL2.40ch12:131226..135857- go_terms:GO:0017137,GO:0009055 functional_description:"Electron transfer flavoprotein alpha subunit (AHRD V1 **** B2ICV7_BEII9); contains Interpro domain(s) IPR001308 Electron transfer flavoprotein, alpha subunit "; GO:0017137,GO:0009055 NbS00027975g0013.1 protein AED:0.24 eAED:0.29 QI:0|0|0|1|0|0|5|0|224; (*ITAG) Solyc12g039050.1.1 (e_value=6e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00039381g0013.1 protein AED:0.35 eAED:0.36 QI:0|0.78|0.83|0.95|0.43|0.54|24|203|1190; (*SWP) sp|Q9LKW9|NHX7_ARATH (e_value=0.0) Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1;; (*TAIR) AT2G01980.1 (e_value=0.0) | Symbols: SOS1, ATSOS1, ATNHX7 | sodium proton exchanger, putative (NHX7) (SOS1) | chr2:457070-463145 FORWARD LENGTH=1146;; (*ITAG) Solyc01g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:30620-43938 transcript_region:SL2.40ch01:30620..43938- go_terms:GO:0005515,GO:0015385 functional_description:"Sodium/hydrogen exchanger Na+ H+ antiporter (AHRD V1 *--* Q8IET0_PLAF7); contains Interpro domain(s) IPR018418 Na+/H+ exchanger, isoforms 7/8, conserved region "; GO:0005515,GO:0015385 NbS00000385g0005.1 protein AED:0.00 eAED:0.00 QI:165|1|1|1|1|1|3|133|274; (*SWP) sp|Q93WV5|WRK69_ARATH (e_value=5e-59) Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1;; (*TAIR) AT3G58710.1 (e_value=2e-62) | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein 69 | chr3:21715192-21716766 FORWARD LENGTH=272;; (*ITAG) Solyc07g055280.2.1 (e_value=3e-137) genomic_reference:SL2.40ch07 gene_region:60692504-60696127 transcript_region:SL2.40ch07:60692504..60696127+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 5 (AHRD V1 ***- A7UGD2_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00000385g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|1|1|1|3|0|201; (*SWP) sp|Q01111|YPT3_NICPL (e_value=3e-141) Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1;; (*TAIR) AT1G06400.1 (e_value=7e-115) | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related small GTP-binding family protein | chr1:1951089-1952686 REVERSE LENGTH=216;; (*ITAG) Solyc07g055290.2.1 (e_value=1e-137) genomic_reference:SL2.40ch07 gene_region:60697004-60702293 transcript_region:SL2.40ch07:60697004..60702293- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00031412g0004.1 protein AED:0.04 eAED:0.04 QI:309|0.8|0.66|1|0.8|0.66|6|352|421; (*SWP) sp|Q05214|ACT1_TOBAC (e_value=0.0) Actin OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc06g076090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43629241-43631739 transcript_region:SL2.40ch06:43629241..43631739+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00031412g0009.1 protein AED:0.17 eAED:0.18 QI:0|0.4|0.16|1|1|1|6|0|707; (*SWP) sp|Q9ZV25|P2C23_ARATH (e_value=0.0) Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1;; (*TAIR) AT2G28890.1 (e_value=0.0) | Symbols: PLL4 | poltergeist like 4 | chr2:12405799-12408062 REVERSE LENGTH=654;; (*ITAG) Solyc06g076100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43634420-43637639 transcript_region:SL2.40ch06:43634420..43637639- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00062086g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|183; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=6e-41) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39020.1 (e_value=9e-52) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16295392-16296102 FORWARD LENGTH=236;; (*ITAG) Solyc08g068280.1.1 (e_value=4e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54579271-54580005 transcript_region:SL2.40ch08:54579271..54580005+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00062086g0005.1 protein AED:0.18 eAED:0.18 QI:154|0.5|0.6|1|1|1|5|356|260; (*TAIR) AT5G25752.1 (e_value=2e-79) | Symbols: ATRBL11, RBL11 | rhomboid-like protein 11 | chr5:8951503-8953323 REVERSE LENGTH=280;; (*ITAG) Solyc08g068270.2.1 (e_value=8e-112) genomic_reference:SL2.40ch08 gene_region:54568138-54571566 transcript_region:SL2.40ch08:54568138..54571566- go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7M4K1_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00029266g0009.1 protein AED:0.06 eAED:0.06 QI:77|0.8|0.83|1|0.8|0.83|6|195|569; (*SWP) sp|O81081|LAC2_ARATH (e_value=0.0) Laccase-2 OS=Arabidopsis thaliana GN=LAC2 PE=2 SV=1;; (*TAIR) AT2G29130.1 (e_value=0.0) | Symbols: LAC2, ATLAC2 | laccase 2 | chr2:12525189-12527699 REVERSE LENGTH=573;; (*ITAG) Solyc06g076330.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43809673-43812715 transcript_region:SL2.40ch06:43809673..43812715- go_terms:GO:0008471,GO:0004322 functional_description:"Laccase (AHRD V1 **** O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00029266g0007.1 protein AED:0.22 eAED:0.51 QI:0|0.33|0|1|1|1|4|0|440 NbS00014466g0001.1 protein AED:0.12 eAED:0.17 QI:325|0.2|0.33|1|1|1|6|933|586; (*SWP) sp|Q65JY4|MURE_BACLD (e_value=8e-80) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=murE PE=3 SV=1;; (*TAIR) AT1G63680.1 (e_value=0.0) | Symbols: ATMURE, PDE316, MURE | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases | chr1:23614461-23617247 FORWARD LENGTH=772;; (*ITAG) Solyc08g081170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61408719-61413145 transcript_region:SL2.40ch08:61408719..61413145+ go_terms:GO:0005515,GO:0008764 functional_description:"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase (AHRD V1 *-** D7UXP7_LISGR); contains Interpro domain(s) IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase "; GO:0005515,GO:0008764 NbS00004642g0009.1 protein AED:0.07 eAED:0.09 QI:230|0.66|0.75|1|0.33|0.25|4|269|388; (*SWP) sp|Q56YJ8|FAMA_ARATH (e_value=9e-103) Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1;; (*TAIR) AT3G24140.1 (e_value=7e-104) | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414;; (*ITAG) Solyc05g053660.1.1 (e_value=2e-138) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62867871-62870213 transcript_region:SL2.40ch05:62867871..62870213+ go_terms:GO:0003700,GO:0016563 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0016563 NbS00004642g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.45|0.5|1|0.54|0.66|12|216|855; (*SWP) sp|Q54JM5|PSMD1_DICDI (e_value=9e-176) 26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1;; (*TAIR) AT2G32730.1 (e_value=0.0) | Symbols: | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880189-13885464 FORWARD LENGTH=1004;; (*ITAG) Solyc05g053650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62857774-62865743 transcript_region:SL2.40ch05:62857774..62865743+ go_terms:GO:0032183,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- O48844_ARATH); contains Interpro domain(s) IPR016642 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "; GO:0032183,GO:0004175 NbS00034315g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|153; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=2e-18) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G45430.1 (e_value=1e-34) | Symbols: AHL22 | AT-hook motif nuclear-localized protein 22 | chr2:18727848-18728801 FORWARD LENGTH=317;; (*ITAG) Solyc01g091470.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:76860856-76862402 transcript_region:SL2.40ch01:76860856..76862402+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00026299g0018.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|0.4|0.5|6|0|454; (*ITAG) Solyc09g008110.1.1 (e_value=9e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026299g0016.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|0.25|0|5|0|1170; (*SWP) sp|Q9C866|PPR65_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1;; (*TAIR) AT1G31430.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:11254025-11255737 REVERSE LENGTH=570;; (*ITAG) Solyc11g017290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8160225-8162027 transcript_region:SL2.40ch11:8160225..8162027- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KL14_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00026299g0024.1 protein AED:0.31 eAED:0.31 QI:356|0.87|0.77|1|0.37|0.66|9|0|382; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=1e-63) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G34470.1 (e_value=3e-135) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc11g017380.1.1 (e_value=3e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8297803-8309880 transcript_region:SL2.40ch11:8297803..8309880+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00026299g0009.1 protein AED:0.58 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|106; (*ITAG) Solyc11g063520.1.1 (e_value=8e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46705162-46705521 transcript_region:SL2.40ch11:46705162..46705521+ functional_description:"ORF16-lacZ fusion protein (AHRD V1 ***- Q57HV4_SALCH)"; NbS00026299g0008.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.25|1|1|4|0|137 NbS00011784g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|229; (*SWP) sp|Q96324|GSTFB_ARATH (e_value=7e-84) Glutathione S-transferase F11 OS=Arabidopsis thaliana GN=GSTF11 PE=2 SV=1;; (*TAIR) AT3G03190.1 (e_value=5e-85) | Symbols: ATGSTF11, ATGSTF6, GSTF11 | glutathione S-transferase F11 | chr3:735071-735877 FORWARD LENGTH=214;; (*ITAG) Solyc02g081340.2.1 (e_value=8e-144) genomic_reference:SL2.40ch02 gene_region:39918963-39920321 transcript_region:SL2.40ch02:39918963..39920321+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** O24261_PETHY); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00011784g0002.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0.25|0.75|1|1|4|0|444; (*SWP) sp|Q9C8D4|AAE11_ARATH (e_value=6e-158) Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1;; (*TAIR) AT1G66120.1 (e_value=5e-159) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:24612640-24614690 FORWARD LENGTH=572;; (*ITAG) Solyc02g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39931191-39933262 transcript_region:SL2.40ch02:39931191..39933262+ go_terms:GO:0004467,GO:0018858 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** D0J2H7_COMT2); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467,GO:0018858 NbS00018239g0010.1 protein AED:0.06 eAED:0.07 QI:0|0.75|0.66|1|0.87|0.77|9|238|1770; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=3e-81) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-52) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc06g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00018239g0011.1 protein AED:0.35 eAED:0.35 QI:272|0.33|0.5|1|0.33|0.25|4|184|15 NbS00053150g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|604; (*SWP) sp|Q9LNJ5|BH013_ARATH (e_value=0.0) Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1;; (*TAIR) AT1G01260.3 (e_value=0.0) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:109595-111367 FORWARD LENGTH=590;; (*ITAG) Solyc01g096050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78903296-78905572 transcript_region:SL2.40ch01:78903296..78905572- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00057328g0001.1 protein AED:0.30 eAED:0.51 QI:0|0|0|1|0|0|4|0|173 NbS00057078g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|0|0|2|0|83; (*TAIR) AT4G14615.1 (e_value=2e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52825.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8383842-8384814 FORWARD LENGTH=76;; (*ITAG) Solyc09g083070.2.1 (e_value=2e-37) genomic_reference:SL2.40ch09 gene_region:64137735-64141529 transcript_region:SL2.40ch09:64137735..64141529- functional_description:"Unknown Protein (AHRD V1)"; NbS00017058g0104.1 protein AED:0.39 eAED:0.39 QI:99|0.83|0.84|1|0.58|0.61|13|328|288 NbS00019858g0012.1 protein AED:0.22 eAED:0.22 QI:319|0.83|0.84|1|0.91|0.84|13|505|735; (*SWP) sp|Q9SJD4|LACS8_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1;; (*TAIR) AT2G04350.2 (e_value=0.0) | Symbols: LACS8 | AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720;; (*ITAG) Solyc07g045290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55717054-55724687 transcript_region:SL2.40ch07:55717054..55724687+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase 3 (AHRD V1 **** ACSL3_HUMAN); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00019858g0011.1 protein AED:0.27 eAED:0.30 QI:0|0.66|0.71|1|1|1|7|326|274; (*TAIR) AT2G04360.1 (e_value=2e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:1519645-1521030 REVERSE LENGTH=320;; (*ITAG) Solyc07g045300.2.1 (e_value=4e-132) genomic_reference:SL2.40ch07 gene_region:55724940-55728323 transcript_region:SL2.40ch07:55724940..55728323- functional_description:"Unknown Protein (AHRD V1)"; NbS00019858g0010.1 protein AED:0.35 eAED:0.39 QI:0|0.5|0|0.8|0.5|0.6|5|0|379; (*SWP) sp|Q948J9|LIP2P_ARATH (e_value=7e-91) Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1;; (*TAIR) AT4G31050.1 (e_value=6e-92) | Symbols: | Biotin/lipoate A/B protein ligase family | chr4:15114345-15115443 FORWARD LENGTH=278;; (*ITAG) Solyc04g079750.2.1 (e_value=4e-100) genomic_reference:SL2.40ch04 gene_region:61696179-61698097 transcript_region:SL2.40ch04:61696179..61698097- go_terms:GO:0016979 functional_description:"Octanoyltransferase (AHRD V1 ***- C7QW96_CYAP0); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0016979 NbS00011397g0001.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|130; (*SWP) sp|A1XQR9|RUXE_PIG (e_value=3e-31) Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1;; (*TAIR) AT4G30330.1 (e_value=2e-40) | Symbols: | Small nuclear ribonucleoprotein family protein | chr4:14836773-14837919 REVERSE LENGTH=88;; (*ITAG) Solyc03g098470.2.1 (e_value=5e-43) genomic_reference:SL2.40ch03 gene_region:54202388-54206465 transcript_region:SL2.40ch03:54202388..54206465- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein E (AHRD V1 ***- B6SXC3_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00011397g0113.1 protein AED:0.30 eAED:0.31 QI:0|0.5|0|0.66|1|1|3|0|165 NbS00011397g0111.1 protein AED:0.55 eAED:0.56 QI:34|1|0|1|0|0|2|92|41 NbS00003936g0004.1 protein AED:0.22 eAED:0.22 QI:202|0.9|0.90|1|0.8|0.81|11|761|396; (*SWP) sp|O27555|ARSA_METTH (e_value=5e-47) Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1;; (*TAIR) AT3G10350.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411;; (*ITAG) Solyc11g069830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51545301-51552055 transcript_region:SL2.40ch11:51545301..51552055- go_terms:GO:0005515,GO:0015105 functional_description:"Arsenite ATPase transporter (Eurofung) (AHRD V1 **** C8VJ74_EMENI); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515,GO:0015105 NbS00050851g0001.1 protein AED:0.49 eAED:0.49 QI:0|0.2|0|0.66|1|1|6|0|169; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=3e-48) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=2e-49) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=6e-61) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00060697g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|225|414; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=1e-28) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT1G21920.1 (e_value=1e-132) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr1:7704454-7705866 REVERSE LENGTH=417;; (*ITAG) Solyc11g013010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5872663-5874269 transcript_region:SL2.40ch11:5872663..5874269+ functional_description:"MORN repeat protein (AHRD V1 *--- A3V9K0_9RHOB); contains Interpro domain(s) IPR003409 MORN motif "; NbS00044805g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|5|0|333; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-128) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=2e-124) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00023984g0005.1 protein AED:0.33 eAED:0.33 QI:364|1|0.90|1|1|1|11|0|590; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=0.0) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=0.0) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00027359g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|520; (*SWP) sp|Q5I0E9|S47A1_RAT (e_value=2e-63) Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1;; (*TAIR) AT4G23030.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc06g035710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:21461952-21463514 transcript_region:SL2.40ch06:21461952..21463514+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PHOLL); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00049863g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|271; (*TAIR) AT3G59520.1 (e_value=7e-141) | Symbols: ATRBL13, RBL13 | RHOMBOID-like protein 13 | chr3:21992054-21992863 FORWARD LENGTH=269;; (*ITAG) Solyc06g053370.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:32606651-32607466 transcript_region:SL2.40ch06:32606651..32607466- go_terms:GO:0016021 functional_description:"Rhomboid domain-containing protein (AHRD V1 ***- D2VRL6_NAEGR); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00049863g0004.1 protein AED:0.37 eAED:0.44 QI:0|0.2|0.33|1|0.2|0.33|6|277|168; (*TAIR) AT1G06050.1 (e_value=5e-15) | Symbols: | Protein of unknown function (DUF1336) | chr1:1830726-1831667 REVERSE LENGTH=313;; (*ITAG) Solyc06g053360.2.1 (e_value=2e-24) genomic_reference:SL2.40ch06 gene_region:32601031-32603586 transcript_region:SL2.40ch06:32601031..32603586+ functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00022021g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|840; (*SWP) sp|Q9FM64|PP431_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1;; (*TAIR) AT5G55740.1 (e_value=0.0) | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:22561941-22564433 REVERSE LENGTH=830;; (*ITAG) Solyc08g013850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3189155-3191674 transcript_region:SL2.40ch08:3189155..3191674- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MKK8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006860g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|334; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=1e-91) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G44970.1 (e_value=7e-88) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc05g055320.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64147535-64149075 transcript_region:SL2.40ch05:64147535..64149075+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00006860g0002.1 protein AED:0.11 eAED:0.22 QI:0|0|0|1|1|1|2|0|301; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=2e-65) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT1G44970.1 (e_value=2e-58) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc05g055320.2.1 (e_value=3e-164) genomic_reference:SL2.40ch05 gene_region:64147535-64149075 transcript_region:SL2.40ch05:64147535..64149075+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00006860g0009.1 protein AED:0.31 eAED:0.31 QI:134|1|1|1|0.66|0.5|4|279|86; (*TAIR) AT1G66240.1 (e_value=2e-40) | Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1 | chr1:24686445-24687327 REVERSE LENGTH=106;; (*ITAG) Solyc05g055310.2.1 (e_value=2e-47) genomic_reference:SL2.40ch05 gene_region:64143436-64146371 transcript_region:SL2.40ch05:64143436..64146371+ go_terms:GO:0032767,GO:0016531 functional_description:"Copper chaperone (AHRD V1 **** Q84KJ2_SOLLC); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0032767,GO:0016531 NbS00015176g0111.1 protein AED:0.13 eAED:0.14 QI:318|0.85|0.62|1|0.85|0.75|8|0|764 NbS00041310g0002.1 protein AED:0.34 eAED:0.34 QI:0|0.69|0.85|1|1|1|14|277|458; (*TAIR) AT3G48860.2 (e_value=2e-75) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). | chr3:18117619-18121853 FORWARD LENGTH=577;; (*ITAG) Solyc03g118390.2.1 (e_value=6e-112) genomic_reference:SL2.40ch03 gene_region:61331348-61340606 transcript_region:SL2.40ch03:61331348..61340606- functional_description:"Chromosome 14 contig 1 DNA sequence (AHRD V1 *-*- Q00WF1_OSTTA)"; NbS00060507g0001.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|0|0|2|163|201; (*SWP) sp|Q6DR24|Y3795_ARATH (e_value=1e-24) Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1;; (*TAIR) AT3G17950.1 (e_value=1e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6146311-6147169 FORWARD LENGTH=211;; (*ITAG) Solyc03g118630.2.1 (e_value=6e-69) genomic_reference:SL2.40ch03 gene_region:61532415-61533448 transcript_region:SL2.40ch03:61532415..61533448- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00022732g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|443; (*SWP) sp|Q93V93|PER44_ARATH (e_value=2e-116) Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1;; (*TAIR) AT4G26010.1 (e_value=2e-117) | Symbols: | Peroxidase superfamily protein | chr4:13200653-13201688 FORWARD LENGTH=310;; (*ITAG) Solyc10g084200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63169081-63170293 transcript_region:SL2.40ch10:63169081..63170293- go_terms:GO:0055114 functional_description:"Peroxidase 57 (AHRD V1 ***- D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00022732g0002.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|1|1|3|380|75; (*SWP) sp|Q9SE95|FIP2_ARATH (e_value=3e-30) FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1;; (*TAIR) AT5G55000.2 (e_value=3e-31) | Symbols: FIP2 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein | chr5:22318644-22321599 FORWARD LENGTH=298;; (*ITAG) Solyc10g076860.1.1 (e_value=4e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59148140-59170739 transcript_region:SL2.40ch10:59148140..59170739+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- Q55D73_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00034055g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|105; (*SWP) sp|O82794|AGL24_ARATH (e_value=8e-33) MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1;; (*TAIR) AT4G24540.1 (e_value=6e-34) | Symbols: AGL24 | AGAMOUS-like 24 | chr4:12671160-12673645 REVERSE LENGTH=220;; (*ITAG) Solyc11g010570.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3640857-3645766 transcript_region:SL2.40ch11:3640857..3645766+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 **-- Q2NNB9_ELAGV); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005634 NbS00000812g0014.1 protein AED:0.10 eAED:0.10 QI:149|0.8|0.83|1|0.8|0.83|6|497|359; (*SWP) sp|P93397|GBB1_TOBAC (e_value=0.0) Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G34460.1 (e_value=0.0) | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377;; (*ITAG) Solyc01g109560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88230608-88236477 transcript_region:SL2.40ch01:88230608..88236477- go_terms:GO:0003924 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 ***- C1GED5_PARBD); contains Interpro domain(s) IPR016346 Guanine nucleotide-binding protein, beta subunit "; GO:0003924 NbS00000812g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|278; (*TAIR) AT3G18870.1 (e_value=1e-93) | Symbols: | Mitochondrial transcription termination factor family protein | chr3:6508515-6509339 REVERSE LENGTH=274;; (*ITAG) Solyc01g109550.2.1 (e_value=3e-165) genomic_reference:SL2.40ch01 gene_region:88229243-88230220 transcript_region:SL2.40ch01:88229243..88230220- functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00000812g0013.1 protein AED:0.17 eAED:0.17 QI:0|0.83|0.71|1|0.83|0.71|7|40|473; (*SWP) sp|Q8GX23|PERK5_ARATH (e_value=1e-131) Proline-rich receptor-like protein kinase PERK5 OS=Arabidopsis thaliana GN=PERK5 PE=2 SV=1;; (*TAIR) AT4G34440.1 (e_value=1e-132) | Symbols: | Protein kinase superfamily protein | chr4:16466008-16468748 FORWARD LENGTH=670;; (*ITAG) Solyc01g109530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88214662-88219013 transcript_region:SL2.40ch01:88214662..88219013+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00000812g0012.1 protein AED:0.18 eAED:0.18 QI:0|1|0.94|1|1|1|17|252|876; (*SWP) sp|Q6Z382|COPG2_ORYSJ (e_value=0.0) Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica GN=Os07g0201100 PE=2 SV=1;; (*TAIR) AT4G34450.1 (e_value=0.0) | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886;; (*ITAG) Solyc01g109540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbS00000812g0115.1 protein AED:0.03 eAED:0.03 QI:297|1|1|1|1|1|2|172|383 NbS00000812g0114.1 protein AED:0.29 eAED:0.32 QI:240|0.8|0.5|1|0.4|0.66|6|229|195 NbS00000812g0121.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|1|0.66|3|0|452 NbS00000812g0116.1 protein AED:0.16 eAED:0.16 QI:0|1|0.87|1|1|0.87|8|0|947 NbS00000812g0112.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|106 NbS00000812g0122.1 protein AED:0.88 eAED:0.91 QI:0|0|0|0.25|1|1|4|0|71 NbS00051604g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|1|1|4|0|281; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=4e-88) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=3e-89) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc03g113470.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57661790-57664014 transcript_region:SL2.40ch03:57661790..57664014+ go_terms:GO:0003824 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *-*- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0003824 NbS00031510g0003.1 protein AED:0.06 eAED:0.06 QI:13|0.66|0.75|1|1|1|4|234|147; (*TAIR) AT3G09980.1 (e_value=7e-50) | Symbols: | Family of unknown function (DUF662) | chr3:3069358-3071145 FORWARD LENGTH=178;; (*ITAG) Solyc09g009210.2.1 (e_value=6e-62) genomic_reference:SL2.40ch09 gene_region:2577349-2580382 transcript_region:SL2.40ch09:2577349..2580382+ functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00041892g0002.1 protein AED:0.53 eAED:0.62 QI:0|0|0|0.8|1|1|5|0|91 NbS00033367g0001.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|1|1|2|0|533; (*TAIR) AT1G26610.1 (e_value=4e-52) | Symbols: | C2H2-like zinc finger protein | chr1:9193735-9195102 FORWARD LENGTH=455;; (*ITAG) Solyc01g010410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5311121-5313481 transcript_region:SL2.40ch01:5311121..5313481+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00037148g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|393|470; (*SWP) sp|Q28HE5|S38A6_XENTR (e_value=1e-30) Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1;; (*TAIR) AT1G80510.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00017628g0002.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.5|0.83|1|1|6|0|191; (*SWP) sp|Q9XI05|PSB3A_ARATH (e_value=1e-131) Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2;; (*TAIR) AT1G21720.1 (e_value=1e-132) | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626394-7628070 FORWARD LENGTH=204;; (*ITAG) Solyc04g009410.2.1 (e_value=1e-132) genomic_reference:SL2.40ch04 gene_region:2835286-2840148 transcript_region:SL2.40ch04:2835286..2840148+ go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SXW4_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00017628g0008.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.44|0.88|0.75|0.88|9|0|652; (*SWP) sp|Q7XUF4|CDKG2_ORYSJ (e_value=0.0) Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. japonica GN=CDKG-2 PE=2 SV=2;; (*TAIR) AT1G67580.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:25327727-25330965 REVERSE LENGTH=752;; (*ITAG) Solyc05g014760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8917405-8920972 transcript_region:SL2.40ch05:8917405..8920972+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 10 (AHRD V1 *-*- D3TRH8_GLOMM); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00039191g0005.1 protein AED:0.05 eAED:0.05 QI:89|0.77|0.9|1|1|1|10|524|611; (*SWP) sp|Q9MBA1|CAO_ARATH (e_value=0.0) Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=1;; (*TAIR) AT1G44446.1 (e_value=0.0) | Symbols: CH1, ATCAO, CAO | Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain | chr1:16848664-16851152 REVERSE LENGTH=536;; (*ITAG) Solyc11g012850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5644237-5648033 transcript_region:SL2.40ch11:5644237..5648033- go_terms:GO:0008152,GO:0055114 functional_description:"Chlorophyllide a oxygenase (AHRD V1 ***- B6TZB6_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0008152,GO:0055114 NbS00039191g0008.1 protein AED:0.25 eAED:0.28 QI:194|0.25|0.4|1|0|0|5|0|304; (*SWP) sp|Q9XHZ8|Y1178_ARATH (e_value=2e-143) BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1;; (*TAIR) AT1G21780.2 (e_value=1e-144) | Symbols: | BTB/POZ domain-containing protein | chr1:7652476-7653866 FORWARD LENGTH=326;; (*ITAG) Solyc11g012840.1.1 (e_value=3e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5640360-5643153 transcript_region:SL2.40ch11:5640360..5643153+ go_terms:GO:0005515 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- D7KKU4_ARALY); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00043566g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|417; (*SWP) sp|O23090|BH014_ARATH (e_value=1e-58) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=8e-60) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc08g083170.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62878232-62879395 transcript_region:SL2.40ch08:62878232..62879395+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00039906g0005.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|362; (*TAIR) AT5G55530.2 (e_value=7e-124) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=1e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00039906g0008.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|3|0|589; (*SWP) sp|Q9FK10|Y5332_ARATH (e_value=2e-47) Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1;; (*TAIR) AT5G53320.1 (e_value=1e-48) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:21636453-21638337 REVERSE LENGTH=601;; (*ITAG) Solyc07g065240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64305617-64307285 transcript_region:SL2.40ch07:64305617..64307285- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004988g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|196; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=2e-41) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=1e-42) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc02g090950.1.1 (e_value=4e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46991663-46992331 transcript_region:SL2.40ch02:46991663..46992331+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00004988g0104.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|114 NbS00004988g0113.1 protein AED:0.69 eAED:0.69 QI:14|0.25|0.2|0.8|0.5|0.8|5|0|197 NbS00025086g0007.1 protein AED:0.20 eAED:0.24 QI:63|0.71|0.5|0.87|0.85|0.75|8|829|265; (*TAIR) AT5G10710.3 (e_value=1e-95) | Symbols: | INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464). | chr5:3379619-3382648 FORWARD LENGTH=298;; (*ITAG) Solyc08g077520.2.1 (e_value=2e-158) genomic_reference:SL2.40ch08 gene_region:58670594-58678386 transcript_region:SL2.40ch08:58670594..58678386- go_terms:GO:0005634 functional_description:"Centromere protein O (AHRD V1 *--- CENPO_CHICK); contains Interpro domain(s) IPR018464 Centromere protein Cenp-O "; GO:0005634 NbS00010777g0012.1 protein AED:0.03 eAED:0.03 QI:937|1|1|1|0|0|4|48|42 NbS00010777g0009.1 protein AED:0.32 eAED:0.32 QI:0|0|0.25|0.75|1|0.75|4|180|178 NbS00004280g0003.1 protein AED:0.58 eAED:0.78 QI:0|0|0|0.75|1|1|4|0|105 NbS00004280g0001.1 protein AED:0.19 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|84; (*TAIR) AT1G71310.3 (e_value=3e-28) | Symbols: | cobalt ion binding | chr1:26879179-26879844 REVERSE LENGTH=165;; (*ITAG) Solyc08g005060.2.1 (e_value=4e-38) genomic_reference:SL2.40ch08 gene_region:48135-51527 transcript_region:SL2.40ch08:48135..51527- go_terms:GO:0050897 functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- Q9LEH5_HORVU)"; GO:0050897 NbS00004280g0101.1 protein AED:0.04 eAED:0.04 QI:42|1|1|1|1|1|3|264|509 NbS00001587g0027.1 protein AED:0.13 eAED:0.13 QI:59|0.81|0.91|1|1|1|12|416|667; (*SWP) sp|Q05627|Y202_CLOB8 (e_value=4e-80) Uncharacterized protein Cbei_0202 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=Cbei_0202 PE=4 SV=2;; (*TAIR) AT4G30720.1 (e_value=0.0) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr4:14972212-14975461 REVERSE LENGTH=707;; (*ITAG) Solyc07g005870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:699869-707614 transcript_region:SL2.40ch07:699869..707614- go_terms:GO:0055114 functional_description:"FAD dependent oxidoreductase (AHRD V1 ***- B9M683_GEOSF); contains Interpro domain(s) IPR002938 Monooxygenase, FAD-binding "; GO:0055114 NbS00001587g0026.1 protein AED:0.19 eAED:0.20 QI:234|0.91|0.83|1|0.82|0.83|24|284|993; (*SWP) sp|P35601|RFC1_MOUSE (e_value=5e-125) Replication factor C subunit 1 OS=Mus musculus GN=Rfc1 PE=1 SV=2;; (*TAIR) AT5G22010.1 (e_value=0.0) | Symbols: AtRFC1, RFC1 | replication factor C1 | chr5:7280632-7287037 REVERSE LENGTH=956;; (*ITAG) Solyc07g005880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:708202-721177 transcript_region:SL2.40ch07:708202..721177- go_terms:GO:0019904 functional_description:"DNA REPLICATION FACTOR C SUBUNIT (AHRD V1 *-*- Q8SRT8_ENCCU); contains Interpro domain(s) IPR012178 DNA replication factor C, large subunit "; GO:0019904 NbS00001587g0021.1 protein AED:0.26 eAED:0.26 QI:0|0.77|0.8|0.9|0.66|0.8|10|330|522; (*SWP) sp|Q7FGZ2|RH1_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana GN=RH1 PE=2 SV=3;; (*TAIR) AT4G15850.1 (e_value=0.0) | Symbols: ATRH1, RH1 | RNA helicase 1 | chr4:9001426-9004534 FORWARD LENGTH=522;; (*ITAG) Solyc07g005890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:729035-737605 transcript_region:SL2.40ch07:729035..737605- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8NUN2_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00001587g0024.1 protein AED:0.07 eAED:0.07 QI:143|1|1|1|0.4|0.5|6|258|175; (*SWP) sp|P42322|CANB1_NAEGR (e_value=1e-31) Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1;; (*TAIR) AT3G18430.2 (e_value=9e-81) | Symbols: | Calcium-binding EF-hand family protein | chr3:6326180-6327476 FORWARD LENGTH=175;; (*ITAG) Solyc07g005900.2.1 (e_value=4e-108) genomic_reference:SL2.40ch07 gene_region:738901-744462 transcript_region:SL2.40ch07:738901..744462+ go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 ***- B6T814_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00001587g0028.1 protein AED:0.17 eAED:0.17 QI:39|0|0|0.5|0.33|0.25|4|0|455; (*TAIR) AT5G57830.1 (e_value=8e-49) | Symbols: | Protein of unknown function, DUF593 | chr5:23429406-23430860 REVERSE LENGTH=387;; (*ITAG) Solyc07g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:748702-750452 transcript_region:SL2.40ch07:748702..750452+ functional_description:"IFA-binding protein (AHRD V1 *-*- Q9CAC4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00001587g0031.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|83; (*TAIR) AT1G30260.1 (e_value=2e-16) | Symbols: | BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651159-10651452 FORWARD LENGTH=97;; (*ITAG) Solyc11g020860.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:12811178-12811423 transcript_region:SL2.40ch11:12811178..12811423+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001587g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|106; (*TAIR) AT1G30260.1 (e_value=8e-18) | Symbols: | BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651159-10651452 FORWARD LENGTH=97;; (*ITAG) Solyc11g020860.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:12811178-12811423 transcript_region:SL2.40ch11:12811178..12811423+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011790g0001.1 protein AED:0.26 eAED:0.26 QI:1200|1|1|1|1|1|2|273|198; (*TAIR) AT1G29820.2 (e_value=1e-88) | Symbols: | Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540;; (*ITAG) Solyc02g021480.2.1 (e_value=4e-85) genomic_reference:SL2.40ch02 gene_region:13662143-13663563 transcript_region:SL2.40ch02:13662143..13663563- functional_description:"Unknown Protein (AHRD V1)"; NbS00011790g0002.1 protein AED:0.50 eAED:0.51 QI:0|0.33|0|0.75|1|1|4|0|84; (*TAIR) AT2G42950.1 (e_value=6e-39) | Symbols: | Magnesium transporter CorA-like family protein | chr2:17864059-17866407 FORWARD LENGTH=501;; (*ITAG) Solyc10g007740.2.1 (e_value=2e-38) genomic_reference:SL2.40ch10 gene_region:1981130-1985036 transcript_region:SL2.40ch10:1981130..1985036- go_terms:GO:0051103 functional_description:"Mg2+ transporter protein CorA family protein (AHRD V1 *-*- D0D0F5_9RHOB)"; GO:0051103 NbS00044645g0014.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|619; (*SWP) sp|Q9SAK0|PP132_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1;; (*TAIR) AT1G79490.1 (e_value=0.0) | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29900617-29903127 FORWARD LENGTH=836;; (*ITAG) Solyc08g078150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59142339-59144723 transcript_region:SL2.40ch08:59142339..59144723+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KH82_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00044645g0017.1 protein AED:0.29 eAED:0.31 QI:5|0.95|0.88|1|0.87|0.88|25|0|884; (*SWP) sp|A3KN83|SBNO1_HUMAN (e_value=6e-112) Protein strawberry notch homolog 1 OS=Homo sapiens GN=SBNO1 PE=1 SV=1;; (*TAIR) AT1G79350.1 (e_value=0.0) | Symbols: EMB1135 | RING/FYVE/PHD zinc finger superfamily protein | chr1:29844829-29853215 REVERSE LENGTH=1295;; (*ITAG) Solyc10g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:385399-413211 transcript_region:SL2.40ch10:385399..413211- go_terms:GO:0016564 functional_description:"Protein strawberry notch homolog 1 (AHRD V1 *-*- SBNO1_CHICK); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0016564 NbS00044645g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|222; (*SWP) sp|Q9SAK0|PP132_ARATH (e_value=3e-138) Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1;; (*TAIR) AT1G79490.1 (e_value=2e-139) | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29900617-29903127 FORWARD LENGTH=836;; (*ITAG) Solyc08g078150.1.1 (e_value=7e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59142339-59144723 transcript_region:SL2.40ch08:59142339..59144723+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KH82_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00044645g0005.1 protein AED:0.04 eAED:0.05 QI:0|1|0.6|1|0.75|0.8|5|370|609; (*SWP) sp|Q9LNC4|GTE4_ARATH (e_value=3e-117) Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1;; (*TAIR) AT1G06230.3 (e_value=2e-118) | Symbols: GTE4 | global transcription factor group E4 | chr1:1907626-1910183 FORWARD LENGTH=766;; (*ITAG) Solyc07g062660.2.1 (e_value=2e-126) genomic_reference:SL2.40ch07 gene_region:62565737-62571287 transcript_region:SL2.40ch07:62565737..62571287- go_terms:GO:0004674 functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0004674 NbS00044645g0011.1 protein AED:0.24 eAED:0.24 QI:70|0.85|0.75|1|0.85|0.87|8|820|346; (*SWP) sp|P43935|Y077_HAEIN (e_value=3e-24) Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1;; (*TAIR) AT1G06240.1 (e_value=3e-134) | Symbols: | Protein of unknown function DUF455 | chr1:1911166-1912875 FORWARD LENGTH=383;; (*ITAG) Solyc10g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2209939-2214155 transcript_region:SL2.40ch10:2209939..2214155- functional_description:"LOC445834 protein (Fragment) (AHRD V1 **-- Q6DF75_XENLA); contains Interpro domain(s) IPR007402 Protein of unknown function DUF455 "; NbS00041238g0003.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|255; (*ITAG) Solyc08g080150.1.1 (e_value=9e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60651002-60652114 transcript_region:SL2.40ch08:60651002..60652114+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00010620g0007.1 protein AED:0.08 eAED:0.08 QI:233|1|1|1|0.5|0.57|7|214|379; (*SWP) sp|Q02979|GDE1_YEAST (e_value=3e-34) Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1;; (*TAIR) AT3G02040.1 (e_value=2e-177) | Symbols: SRG3 | senescence-related gene 3 | chr3:348505-349909 REVERSE LENGTH=361;; (*ITAG) Solyc02g094400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49509646-49511664 transcript_region:SL2.40ch02:49509646..49511664+ go_terms:GO:0006629,GO:0006071 functional_description:"Glycerophosphodiester phosphodiesterase gde1 (AHRD V1 ***- B6JW52_SCHJY); contains Interpro domain(s) IPR004129 Glycerophosphoryl diester phosphodiesterase "; GO:0006629,GO:0006071 NbS00010620g0009.1 protein AED:0.22 eAED:0.24 QI:0|1|0.6|1|0.75|1|5|564|445; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=0.0) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc02g094390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49503878-49507004 transcript_region:SL2.40ch02:49503878..49507004+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00010620g0008.1 protein AED:0.40 eAED:0.46 QI:0|0|0.33|1|0.5|0|3|0|119; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=2e-15) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=8e-24) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc01g009860.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:4382336-4384348 transcript_region:SL2.40ch01:4382336..4384348- go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00024694g0018.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.5|1|1|0.75|4|0|165; (*SWP) sp|Q5XQC7|BON3_ARATH (e_value=6e-70) Protein BONZAI 3 OS=Arabidopsis thaliana GN=BON3 PE=1 SV=1;; (*TAIR) AT1G08860.1 (e_value=5e-71) | Symbols: BON3 | Calcium-dependent phospholipid-binding Copine family protein | chr1:2842153-2846138 FORWARD LENGTH=584;; (*ITAG) Solyc03g118200.2.1 (e_value=2e-67) genomic_reference:SL2.40ch03 gene_region:61188206-61198586 transcript_region:SL2.40ch03:61188206..61198586- go_terms:GO:0005544 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544 NbS00024694g0019.1 protein AED:0.30 eAED:0.30 QI:0|0.46|0.21|0.71|0.53|0.57|14|0|325; (*SWP) sp|Q0WQ63|ERDL8_ARATH (e_value=2e-112) Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1;; (*TAIR) AT3G05150.1 (e_value=1e-113) | Symbols: | Major facilitator superfamily protein | chr3:1440216-1443361 FORWARD LENGTH=470;; (*ITAG) Solyc09g074230.2.1 (e_value=5e-109) genomic_reference:SL2.40ch09 gene_region:61501305-61505288 transcript_region:SL2.40ch09:61501305..61505288- go_terms:GO:0005536 functional_description:"Glucose transporter 8 (AHRD V1 **** Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005536 NbS00024694g0017.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0|0.75|1|1|4|0|112; (*SWP) sp|Q5XQC7|BON3_ARATH (e_value=6e-43) Protein BONZAI 3 OS=Arabidopsis thaliana GN=BON3 PE=1 SV=1;; (*TAIR) AT1G08860.1 (e_value=4e-44) | Symbols: BON3 | Calcium-dependent phospholipid-binding Copine family protein | chr1:2842153-2846138 FORWARD LENGTH=584;; (*ITAG) Solyc10g045520.1.1 (e_value=5e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:29630428-29631671 transcript_region:SL2.40ch10:29630428..29631671- functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; NbC26109045g0003.1 protein AED:0.22 eAED:0.22 QI:57|0.33|0.5|1|0.33|0.5|4|290|523; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=1e-14) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G36930.1 (e_value=2e-28) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571907 REVERSE LENGTH=1188;; (*ITAG) Solyc01g102880.1.1 (e_value=4e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83313053-83324485 transcript_region:SL2.40ch01:83313053..83324485- go_terms:GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 NbS00052931g0005.1 protein AED:0.17 eAED:0.17 QI:657|1|0.5|1|0.66|0.5|4|0|145; (*SWP) sp|Q38825|IAA7_ARATH (e_value=1e-66) Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1;; (*TAIR) AT3G23050.1 (e_value=8e-68) | Symbols: IAA7, AXR2 | indole-3-acetic acid 7 | chr3:8194768-8196716 FORWARD LENGTH=243;; (*ITAG) Solyc06g053830.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:33179702-33182081 transcript_region:SL2.40ch06:33179702..33182081- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00052931g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|84; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=1e-53) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT1G04270.2 (e_value=4e-54) | Symbols: RPS15 | cytosolic ribosomal protein S15 | chr1:1141852-1142960 REVERSE LENGTH=151;; (*ITAG) Solyc06g053820.2.1 (e_value=5e-55) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00031174g0004.1 protein AED:0.21 eAED:0.21 QI:103|1|1|1|0.63|0.58|12|379|356; (*SWP) sp|P12424|GLNA_NICPL (e_value=0.0) Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT5G37600.1 (e_value=0.0) | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356;; (*ITAG) Solyc11g011380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4456053-4460206 transcript_region:SL2.40ch11:4456053..4460206+ go_terms:GO:0006807,GO:0003824 functional_description:"Glutamine synthetase (AHRD V1 ***- Q42950_TOBAC); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0006807,GO:0003824 NbS00002556g0018.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.85|1|0.83|1|7|321|404; (*SWP) sp|Q8RXN3|PPT1_ARATH (e_value=1e-112) Phosphoenolpyruvate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=PPT1 PE=1 SV=1;; (*TAIR) AT5G33320.1 (e_value=9e-114) | Symbols: CUE1, PPT, ARAPPT | Glucose-6-phosphate/phosphate translocator-related | chr5:12588950-12591408 FORWARD LENGTH=408;; (*ITAG) Solyc03g112870.2.1 (e_value=6e-145) genomic_reference:SL2.40ch03 gene_region:57216669-57220808 transcript_region:SL2.40ch03:57216669..57220808+ go_terms:GO:0015152,GO:0008524 functional_description:"Glucose-6P/phosphate translocator (AHRD V1 **** Q9MSB4_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0015152,GO:0008524 NbS00002556g0019.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|298; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=1e-127) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=1e-128) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g026400.1.1 (e_value=5e-170) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:16569293-16581104 transcript_region:SL2.40ch12:16569293..16581104+ go_terms:GO:0006508,GO:0003824 functional_description:"Serine protease (AHRD V1 ***- D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0006508,GO:0003824 NbS00002556g0021.1 protein AED:0.09 eAED:0.09 QI:87|0.66|0.25|1|0|0.25|4|359|91; (*SWP) sp|Q96499|RL44_GOSHI (e_value=2e-45) 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3;; (*TAIR) AT4G14320.1 (e_value=4e-44) | Symbols: | Zinc-binding ribosomal protein family protein | chr4:8242684-8243805 REVERSE LENGTH=105;; (*ITAG) Solyc03g112850.2.1 (e_value=1e-46) genomic_reference:SL2.40ch03 gene_region:57204158-57205860 transcript_region:SL2.40ch03:57204158..57205860- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L44 (AHRD V1 ***- B9RH89_RICCO); contains Interpro domain(s) IPR000552 Ribosomal protein L44e "; GO:0003735,GO:0005515 NbS00002556g0017.1 protein AED:0.29 eAED:0.34 QI:0|0.2|0.16|0.83|0.8|0.83|6|0|293; (*SWP) sp|Q2VZE7|APAG_MAGSA (e_value=1e-32) Protein ApaG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=apaG PE=3 SV=1;; (*ITAG) Solyc12g021360.1.1 (e_value=3e-146) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:16026938-16041330 transcript_region:SL2.40ch12:16026938..16041330+ go_terms:GO:0006289 functional_description:"ApaG (AHRD V1 *-*- A6GAQ0_9DELT); contains Interpro domain(s) IPR007474 ApaG "; GO:0006289 NbS00002556g0024.1 protein AED:0.15 eAED:0.32 QI:56|0|0|1|0|0|3|0|85 NbS00040667g0002.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.25|1|1|4|0|101; (*TAIR) AT1G27000.1 (e_value=4e-22) | Symbols: | Protein of unknown function (DUF1664) | chr1:9374068-9376422 FORWARD LENGTH=304;; (*ITAG) Solyc08g005230.2.1 (e_value=3e-29) genomic_reference:SL2.40ch08 gene_region:144167-150496 transcript_region:SL2.40ch08:144167..150496+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00011158g0009.1 protein AED:0.29 eAED:0.29 QI:21|0.84|0.71|1|0.61|0.71|14|0|403; (*SWP) sp|Q8DHG3|SYW_THEEB (e_value=5e-125) Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1;; (*TAIR) AT2G25840.1 (e_value=3e-170) | Symbols: OVA4 | Nucleotidylyl transferase superfamily protein | chr2:11021924-11025158 FORWARD LENGTH=408;; (*ITAG) Solyc12g095850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63305181-63315194 transcript_region:SL2.40ch12:63305181..63315194+ go_terms:GO:0005737 functional_description:"Tryptophanyl-tRNA synthetase (AHRD V1 ***- B4AZK3_9CHRO); contains Interpro domain(s) IPR002306 Tryptophanyl-tRNA synthetase, class Ib "; GO:0005737 NbS00011158g0008.1 protein AED:0.28 eAED:0.28 QI:132|1|1|1|1|1|10|276|534; (*SWP) sp|Q96SW2|CRBN_HUMAN (e_value=8e-45) Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1;; (*TAIR) AT2G25740.1 (e_value=0.0) | Symbols: | ATP-dependent protease La (LON) domain protein | chr2:10980175-10983632 FORWARD LENGTH=547;; (*ITAG) Solyc12g095840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63294732-63301310 transcript_region:SL2.40ch12:63294732..63301310- go_terms:GO:0006508 functional_description:"Protein cereblon homolog (AHRD V1 *-*- CRBN_DROYA); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00047120g0003.1 protein AED:0.31 eAED:0.62 QI:0|1|0.5|1|0|0.5|2|166|103; (*TAIR) AT1G65560.1 (e_value=1e-29) | Symbols: | Zinc-binding dehydrogenase family protein | chr1:24371608-24373673 REVERSE LENGTH=350;; (*ITAG) Solyc05g055700.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:64392256-64395966 transcript_region:SL2.40ch05:64392256..64395966- go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D5VIT9_CAUST); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00002131g0010.1 protein AED:0.14 eAED:0.14 QI:313|1|1|1|0.77|0.7|10|603|372; (*SWP) sp|P14232|TGA1A_TOBAC (e_value=0.0) TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1;; (*TAIR) AT5G65210.5 (e_value=1e-144) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g054320.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51444423-51451664 transcript_region:SL2.40ch04:51444423..51451664- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00002131g0011.1 protein AED:0.20 eAED:0.20 QI:178|1|1|1|1|0.87|8|0|455; (*SWP) sp|Q940M2|AGT21_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1;; (*TAIR) AT4G39660.1 (e_value=0.0) | Symbols: AGT2 | alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476;; (*ITAG) Solyc04g054310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51438793-51444211 transcript_region:SL2.40ch04:51438793..51444211+ go_terms:GO:0008453 functional_description:"Alanine-glyoxylate aminotransferase (AHRD V1 **** D2KZ10_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0008453 NbS00013026g0004.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|1|1|2|0|60 NbS00013026g0010.1 protein AED:0.42 eAED:0.44 QI:428|0.4|0.63|0.72|0.5|0.63|11|580|416; (*SWP) sp|Q0DBD3|PP2A1_ORYSJ (e_value=6e-126) Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A1 PE=2 SV=1;; (*TAIR) AT1G10430.1 (e_value=5e-127) | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=2e-129) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00013026g0006.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|4|0|161; (*ITAG) Solyc08g048480.2.1 (e_value=3e-18) genomic_reference:SL2.40ch08 gene_region:40305426-40306513 transcript_region:SL2.40ch08:40305426..40306513- functional_description:"Unknown Protein (AHRD V1)"; NbS00013026g0011.1 protein AED:0.20 eAED:0.20 QI:541|1|1|1|0.22|0.4|10|458|310; (*TAIR) AT1G60670.2 (e_value=2e-63) | Symbols: | Protein of unknown function (DUF3755) | chr1:22344099-22347140 FORWARD LENGTH=254;; (*ITAG) Solyc01g011350.2.1 (e_value=6e-153) genomic_reference:SL2.40ch01 gene_region:8685285-8695311 transcript_region:SL2.40ch01:8685285..8695311- functional_description:"cDNA clone J013057D02 full insert sequence (AHRD V1 **-- B7EBX1_ORYSJ)"; NbS00010880g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|652|201; (*SWP) sp|Q9LDE4|ERF83_ARATH (e_value=3e-20) Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1;; (*TAIR) AT3G20310.1 (e_value=2e-21) | Symbols: ATERF-7, ATERF7, ERF7 | ethylene response factor 7 | chr3:7085957-7086691 REVERSE LENGTH=244;; (*ITAG) Solyc07g049490.1.1 (e_value=5e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:57088001-57088597 transcript_region:SL2.40ch07:57088001..57088597+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00010880g0017.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.66|0.4|0.5|6|0|415; (*SWP) sp|Q9SR40|LAC7_ARATH (e_value=4e-144) Laccase-7 OS=Arabidopsis thaliana GN=LAC7 PE=2 SV=1;; (*TAIR) AT3G09220.1 (e_value=3e-145) | Symbols: LAC7 | laccase 7 | chr3:2827434-2830477 REVERSE LENGTH=567;; (*ITAG) Solyc07g049460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57063539-57067729 transcript_region:SL2.40ch07:57063539..57067729+ go_terms:GO:0005515,GO:0004322 functional_description:"Laccase (AHRD V1 ***- B1PXG7_SOLLC); contains Interpro domain(s) IPR017761 Laccase "; GO:0005515,GO:0004322 NbS00010880g0018.1 protein AED:0.32 eAED:0.32 QI:0|1|0.75|1|0|0.25|4|0|106; (*SWP) sp|Q38859|RPB11_ARATH (e_value=1e-68) DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1;; (*TAIR) AT3G52090.1 (e_value=1e-69) | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116;; (*ITAG) Solyc11g069910.1.1 (e_value=4e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51605382-51607881 transcript_region:SL2.40ch11:51605382..51607881+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit J (AHRD V1 ***- B4FJS1_MAIZE); contains Interpro domain(s) IPR009025 DNA-directed RNA polymerase, RBP11-like "; GO:0006350 NbS00010880g0021.1 protein AED:0.26 eAED:0.47 QI:0|0|0|0.8|0.25|0.4|5|0|240; (*ITAG) Solyc01g009800.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4247937-4250810 transcript_region:SL2.40ch01:4247937..4250810- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 ***- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00010880g0019.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.33|0.5|0.66|3|0|90; (*TAIR) AT1G04985.1 (e_value=2e-22) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:1416563-1418291 REVERSE LENGTH=193; NbS00010880g0020.1 protein AED:0.40 eAED:0.47 QI:0|0|0|1|0|0|2|0|122 NbS00024676g0013.1 protein AED:0.19 eAED:0.34 QI:41|1|0.66|1|0.5|0.66|3|0|58; (*SWP) sp|Q5QM99|RL37A_ORYSJ (e_value=5e-33) 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=3 SV=1;; (*TAIR) AT3G60245.1 (e_value=6e-34) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:22268803-22269750 FORWARD LENGTH=92;; (*ITAG) Solyc10g061970.1.1 (e_value=5e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54560015-54561512 transcript_region:SL2.40ch10:54560015..54561512- go_terms:GO:0005840 functional_description:"60S ribosomal protein L37a (AHRD V1 ***- Q5GMM4_CAPCH); contains Interpro domain(s) IPR002674 Ribosomal protein L37ae "; GO:0005840 NbS00024676g0007.1 protein AED:0.27 eAED:0.27 QI:1139|0.5|0.66|1|0.5|0.33|3|0|184; (*ITAG) Solyc08g077730.2.1 (e_value=2e-14) genomic_reference:SL2.40ch08 gene_region:58788938-58793059 transcript_region:SL2.40ch08:58788938..58793059- go_terms:GO:0042302 functional_description:"1-phosphatidylinositol-4-phosphate 5-kinase-like protein (AHRD V1 *--- Q67UY9_ORYSJ); contains Interpro domain(s) IPR003409 MORN motif "; GO:0042302 NbS00024676g0012.1 protein AED:0.30 eAED:0.30 QI:102|0.92|0.92|1|0.61|0.57|14|0|529; (*SWP) sp|Q8RY73|DOM3Z_ARATH (e_value=0.0) Protein Dom3z homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g17620 PE=1 SV=1;; (*TAIR) AT4G17620.1 (e_value=0.0) | Symbols: | glycine-rich protein | chr4:9822005-9824859 FORWARD LENGTH=544;; (*ITAG) Solyc08g077750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58809674-58817252 transcript_region:SL2.40ch08:58809674..58817252- functional_description:"Protein rai1 (AHRD V1 *--- C8V0J5_EMENI); contains Interpro domain(s) IPR013961 RAI1 like "; NbS00026114g0015.1 protein AED:0.08 eAED:0.09 QI:0|0.33|0|1|0.33|0.25|4|0|1024; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=1e-125) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT3G56370.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:20899403-20902390 REVERSE LENGTH=964;; (*ITAG) Solyc06g048620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27865594-27869299 transcript_region:SL2.40ch06:27865594..27869299+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00026114g0014.1 protein AED:0.19 eAED:0.19 QI:120|1|1|1|1|1|12|235|376; (*SWP) sp|Q9ZTS1|SYM_ORYSJ (e_value=7e-42) Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2;; (*TAIR) AT2G40660.1 (e_value=1e-126) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:16966011-16968866 FORWARD LENGTH=389;; (*ITAG) Solyc06g048610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27850330-27858847 transcript_region:SL2.40ch06:27850330..27858847- go_terms:GO:0032266,GO:0008047,GO:0080025 functional_description:"Methionyl-tRNA synthetase-like protein (AHRD V1 ***- Q8RUP8_ORYSJ); contains Interpro domain(s) IPR002547 tRNA-binding region "; GO:0032266,GO:0008047,GO:0080025 NbS00026114g0016.1 protein AED:0.27 eAED:0.27 QI:229|0.5|0.6|1|0.25|0|5|299|119; (*SWP) sp|Q9FPR6|ARR17_ARATH (e_value=2e-23) Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1;; (*TAIR) AT3G56380.1 (e_value=2e-24) | Symbols: ARR17, RR17 | response regulator 17 | chr3:20905480-20906368 FORWARD LENGTH=153;; (*ITAG) Solyc06g048600.2.1 (e_value=4e-35) genomic_reference:SL2.40ch06 gene_region:27842935-27846240 transcript_region:SL2.40ch06:27842935..27846240- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00026114g0009.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|150; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=8e-21) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=6e-22) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=1e-40) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004340g0013.1 protein AED:0.11 eAED:0.11 QI:110|0.76|0.57|0.92|0.69|0.71|14|0|956; (*TAIR) AT1G79190.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:29788639-29794116 FORWARD LENGTH=1335;; (*ITAG) Solyc12g017280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6478972-6496635 transcript_region:SL2.40ch12:6478972..6496635+ go_terms:GO:0005488 functional_description:"Os10g0575800 protein (Fragment) (AHRD V1 ***- Q0IVE5_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00039041g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|102; (*ITAG) Solyc06g076790.1.1 (e_value=4e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:44091817-44092137 transcript_region:SL2.40ch06:44091817..44092137- functional_description:"Unknown Protein (AHRD V1)"; NbS00009826g0009.1 protein AED:0.23 eAED:0.23 QI:274|1|1|1|0.5|0.33|3|53|314; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=5e-79) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=4e-80) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc05g009880.2.1 (e_value=5e-116) genomic_reference:SL2.40ch05 gene_region:4099737-4103336 transcript_region:SL2.40ch05:4099737..4103336+ go_terms:GO:0003700 functional_description:"Transcription factor bHLH30 (AHRD V1 **-* BH030_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00009826g0005.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|1|1|2|0|114; (*ITAG) Solyc08g016290.1.1 (e_value=5e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00058706g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|150; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=3e-72) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=2e-73) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc05g050750.1.1 (e_value=4e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60029606-60030058 transcript_region:SL2.40ch05:60029606..60030058- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00012223g0013.1 protein AED:0.34 eAED:0.34 QI:93|0.57|0.75|1|0.57|0.87|8|458|282; (*TAIR) AT4G06676.1 (e_value=6e-85) | Symbols: | CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 264 Blast hits to 262 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | chr4:3898998-3901589 FORWARD LENGTH=320;; (*ITAG) Solyc10g044910.1.1 (e_value=9e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24383999-24396229 transcript_region:SL2.40ch10:24383999..24396229+ functional_description:"Etoposide-induced protein 2.4 homolog (AHRD V1 ***- EI24_HUMAN); contains Interpro domain(s) IPR009890 Etoposide-induced 2.4 "; NbS00012223g0014.1 protein AED:0.35 eAED:0.35 QI:387|1|0.88|1|0.62|0.77|9|0|345; (*SWP) sp|Q5R7Q3|NIPA2_PONAB (e_value=2e-69) Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G71900.1 (e_value=2e-171) | Symbols: | Protein of unknown function (DUF803) | chr1:27061754-27064053 FORWARD LENGTH=343;; (*ITAG) Solyc01g103760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84049754-84055434 transcript_region:SL2.40ch01:84049754..84055434+ go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbS00012223g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|147; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=5e-54) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=4e-55) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=5e-59) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00018024g0005.1 protein AED:0.29 eAED:0.30 QI:0|1|0.6|1|0.75|1|5|0|497; (*SWP) sp|Q9JHZ9|S38A3_RAT (e_value=3e-23) Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1;; (*TAIR) AT3G30390.2 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr3:11977112-11978827 REVERSE LENGTH=460;; (*ITAG) Solyc02g065680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31420560-31423989 transcript_region:SL2.40ch02:31420560..31423989+ functional_description:"Amino acid transporter (AHRD V1 ***- B9N1V7_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00018024g0003.1 protein AED:0.46 eAED:0.59 QI:0|0|0|0.66|1|1|3|0|86 NbS00042518g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0.5|1|0|0|4|0|305; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=1e-122) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=1e-123) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g103030.2.1 (e_value=1e-147) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00042518g0006.1 protein AED:0.38 eAED:0.39 QI:0|1|0|1|1|1|2|0|188; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=4e-94) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=3e-95) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g103030.2.1 (e_value=7e-95) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00042518g0005.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|78; (*SWP) sp|Q56XQ6|PTR15_ARATH (e_value=2e-18) Probable peptide/nitrate transporter At1g33440 OS=Arabidopsis thaliana GN=At1g33440 PE=2 SV=1;; (*TAIR) AT1G33440.1 (e_value=2e-19) | Symbols: | Major facilitator superfamily protein | chr1:12127712-12130327 REVERSE LENGTH=601;; (*ITAG) Solyc01g103030.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00055273g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|393; (*SWP) sp|Q66GR0|FLA17_ARATH (e_value=0.0) Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1;; (*TAIR) AT5G06390.1 (e_value=0.0) | Symbols: FLA17 | FASCICLIN-like arabinogalactan protein 17 precursor | chr5:1952939-1955047 FORWARD LENGTH=458;; (*ITAG) Solyc10g081720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62066241-62069437 transcript_region:SL2.40ch10:62066241..62069437+ functional_description:"Fasciclin-like arabinogalactan protein 14 (AHRD V1 ***- A9XTL9_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00007522g0008.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.75|0.33|0.75|4|0|868; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-72) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT1G50180.1 (e_value=2e-54) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc07g009180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00007522g0005.1 protein AED:0.29 eAED:0.29 QI:32|0.87|1|1|1|1|9|511|372; (*TAIR) AT2G19160.1 (e_value=2e-174) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr2:8310921-8313595 FORWARD LENGTH=394;; (*ITAG) Solyc07g008940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3946263-3952169 transcript_region:SL2.40ch07:3946263..3952169- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbS00036071g0003.1 protein AED:0.23 eAED:0.24 QI:242|1|0.8|1|0.75|0.6|5|0|421; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-25) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT3G25410.1 (e_value=0.0) | Symbols: | Sodium Bile acid symporter family | chr3:9214565-9216331 REVERSE LENGTH=431;; (*ITAG) Solyc09g055940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41844927-41847439 transcript_region:SL2.40ch09:41844927..41847439- go_terms:GO:0015370 functional_description:"Bile acid sodium symporter family protein (AHRD V1 **** D7L6U2_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0015370 NbS00001860g0012.1 protein AED:0.11 eAED:0.11 QI:219|1|1|1|0.78|0.93|15|233|555; (*SWP) sp|O22757|MLO8_ARATH (e_value=0.0) MLO-like protein 8 OS=Arabidopsis thaliana GN=MLO8 PE=2 SV=2;; (*TAIR) AT2G17480.1 (e_value=0.0) | Symbols: MLO8, ATMLO8 | Seven transmembrane MLO family protein | chr2:7590559-7593768 REVERSE LENGTH=593;; (*ITAG) Solyc00g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6816892-6823417 transcript_region:SL2.40ch00:6816892..6823417+ go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00001860g0013.1 protein AED:0.38 eAED:0.41 QI:209|0.83|0.71|1|0.33|0.71|7|0|309; (*SWP) sp|Q8L7S0|ULP2B_ARATH (e_value=6e-16) Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3;; (*TAIR) AT3G48480.1 (e_value=1e-60) | Symbols: | Cysteine proteinases superfamily protein | chr3:17957326-17959062 REVERSE LENGTH=298;; (*ITAG) Solyc00g007260.2.1 (e_value=8e-152) genomic_reference:SL2.40ch00 gene_region:6896013-6900521 transcript_region:SL2.40ch00:6896013..6900521+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease 7 (AHRD V1 *-*- SENP7_HUMAN); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001860g0017.1 protein AED:0.28 eAED:0.28 QI:172|1|1|1|0.85|0.75|8|0|245; (*SWP) sp|Q9M060|IF62_ARATH (e_value=1e-169) Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1;; (*TAIR) AT3G55620.1 (e_value=1e-170) | Symbols: emb1624 | Translation initiation factor IF6 | chr3:20634581-20636312 FORWARD LENGTH=245;; (*ITAG) Solyc00g007270.2.1 (e_value=1e-177) genomic_reference:SL2.40ch00 gene_region:6900991-6904901 transcript_region:SL2.40ch00:6900991..6904901- go_terms:GO:0005515,GO:0043023 functional_description:"Translation initiation factor (AHRD V1 ***- A6ZWQ9_YEAS7); contains Interpro domain(s) IPR002769 Translation initiation factor IF6 "; GO:0005515,GO:0043023 NbS00015774g0004.1 protein AED:0.69 eAED:0.69 QI:0|0.28|0.12|0.37|0.85|0.87|8|0|297; (*SWP) sp|Q8BZW8|NHLC2_MOUSE (e_value=1e-17) NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1;; (*TAIR) AT1G56500.1 (e_value=2e-43) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055;; (*ITAG) Solyc01g100650.2.1 (e_value=5e-36) genomic_reference:SL2.40ch01 gene_region:82378816-82399452 transcript_region:SL2.40ch01:82378816..82399452+ go_terms:GO:0016787,GO:0008152,GO:0016491,GO:0045454 functional_description:"NHL repeat containing 2 (AHRD V1 *--- B2RR26_MOUSE); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; GO:0016787,GO:0008152,GO:0016491,GO:0045454 NbS00011904g0101.1 protein AED:0.21 eAED:0.21 QI:360|0|0.5|1|0|0.5|2|404|150 NbS00011904g0102.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|88 NbS00042241g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|0.66|1|1|3|0|122; (*SWP) sp|P29062|PR4A_TOBAC (e_value=3e-58) Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G04720.1 (e_value=2e-45) | Symbols: PR4, HEL, PR-4 | pathogenesis-related 4 | chr3:1285691-1286531 REVERSE LENGTH=212;; (*ITAG) Solyc01g097240.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:79922952-79924628 transcript_region:SL2.40ch01:79922952..79924628- go_terms:GO:0016998,GO:0050832 functional_description:"Pathogenesis-related protein 4B (Fragment) (AHRD V1 **-- Q6LBM4_TOBAC); contains Interpro domain(s) IPR018226 Barwin, conserved site IPR001153 Barwin "; GO:0016998,GO:0050832 NbS00026757g0102.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|191 NbS00026757g0113.1 protein AED:0.08 eAED:0.08 QI:22|0.5|0.33|0.66|0.5|0.33|3|0|194 NbS00026757g0114.1 protein AED:0.30 eAED:0.79 QI:0|0|0|0.5|1|1|2|0|124 NbS00026757g0112.1 protein AED:0.13 eAED:0.32 QI:0|0|0|1|0|0|3|0|169 NbS00026757g0202.1 protein AED:0.09 eAED:0.09 QI:1406|0.87|0.88|1|0.12|0.22|9|2196|147 NbS00017787g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.78|0.65|0.93|0.78|0.75|29|0|1956; (*SWP) sp|O14981|BTAF1_HUMAN (e_value=0.0) TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2;; (*TAIR) AT3G54280.1 (e_value=0.0) | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20103807 FORWARD LENGTH=2045;; (*ITAG) Solyc08g074500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55766335-55779927 transcript_region:SL2.40ch08:55766335..55779927- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00041464g0006.1 protein AED:0.17 eAED:0.22 QI:0|0.33|0|0.5|1|1|4|0|511; (*ITAG) Solyc01g010690.1.1 (e_value=3e-159) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:5704672-5706189 transcript_region:SL2.40ch01:5704672..5706189+ functional_description:"Polyvinylalcohol dehydrogenase (AHRD V1 ***- D4SWQ1_9XANT); contains Interpro domain(s) IPR011047 Quinonprotein alcohol dehydrogenase-like "; NbS00041464g0007.1 protein AED:0.12 eAED:0.12 QI:5|1|1|1|1|1|5|331|443; (*SWP) sp|Q9CAR3|KINGL_ARATH (e_value=3e-128) SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1;; (*TAIR) AT1G69800.1 (e_value=2e-129) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:26274416-26276105 REVERSE LENGTH=447;; (*ITAG) Solyc01g010700.2.1 (e_value=9e-165) genomic_reference:SL2.40ch01 gene_region:5726264-5728807 transcript_region:SL2.40ch01:5726264..5728807- functional_description:"AKIN gamma (AHRD V1 **-- B4FX20_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbC25434335g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|0|2|0|100; (*SWP) sp|Q0WP44|HASTY_ARATH (e_value=9e-31) Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1;; (*TAIR) AT3G05040.1 (e_value=7e-32) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202;; (*ITAG) Solyc01g098170.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:80505430-80517080 transcript_region:SL2.40ch01:80505430..80517080+ go_terms:GO:0005487 functional_description:"Exportin 5 (Fragment) (AHRD V1 *--- Q5JTE8_HUMAN); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005487 NbS00023108g0002.1 protein AED:0.08 eAED:0.08 QI:440|0.77|0.7|1|1|1|10|507|715; (*SWP) sp|Q9ZVM9|Y1461_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1;; (*TAIR) AT1G18670.1 (e_value=0.0) | Symbols: IBS1 | Protein kinase superfamily protein | chr1:6427242-6430696 REVERSE LENGTH=709;; (*ITAG) Solyc03g115660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59353774-59359756 transcript_region:SL2.40ch03:59353774..59359756+ go_terms:GO:0016301 functional_description:"Cell division protein kinase 12 (AHRD V1 *-** CDK12_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00015631g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|165; (*SWP) sp|P98012|COX2_BETVU (e_value=2e-83) Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1;; (*ITAG) ATMG00160.1 (e_value=4e-81) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc11g056410.1.1 (e_value=8e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43129209-43131311 transcript_region:SL2.40ch11:43129209..43131311+ go_terms:GO:0016020,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- Q99032_PETHY); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0016020,GO:0005507 NbS00020349g0003.1 protein AED:0.44 eAED:0.48 QI:0|0|0|0.5|1|1|6|0|391; (*SWP) sp|Q9SXP7|LIPB_ARATH (e_value=2e-118) Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=1 SV=1;; (*TAIR) AT1G04640.2 (e_value=2e-119) | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292541-1293248 FORWARD LENGTH=235;; (*ITAG) Solyc02g077460.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36971744-36972394 transcript_region:SL2.40ch02:36971744..36972394- go_terms:GO:0033819 functional_description:"Octanoyltransferase (AHRD V1 ***- A9AV27_HERA2); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0033819 NbS00020349g0004.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|125; (*SWP) sp|P68428|H32_WHEAT (e_value=1e-72) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=1e-73) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=9e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00020349g0015.1 protein AED:0.26 eAED:0.26 QI:287|0.75|0.66|1|1|1|9|0|245; (*SWP) sp|P46276|F16P2_SOLTU (e_value=3e-145) Fructose-1,6-bisphosphatase, cytosolic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G43670.1 (e_value=2e-134) | Symbols: | Inositol monophosphatase family protein | chr1:16468184-16470347 FORWARD LENGTH=341;; (*ITAG) Solyc12g056530.1.1 (e_value=7e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47839094-47842634 transcript_region:SL2.40ch12:47839094..47842634- go_terms:GO:0005975 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 ***- B8J024_DESDA); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase "; GO:0005975 NbS00044767g0005.1 protein AED:0.06 eAED:0.07 QI:85|1|0.5|1|0|0|2|0|573; (*TAIR) AT3G60400.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr3:22329093-22330769 FORWARD LENGTH=558;; (*ITAG) Solyc01g090490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:75927901-75929793 transcript_region:SL2.40ch01:75927901..75929793+ functional_description:"mTERF family protein (AHRD V1 **-- B6SVQ8_MAIZE); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00044767g0015.1 protein AED:0.16 eAED:0.18 QI:0|0|0|0.83|1|1|6|0|948; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=4e-40) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT5G43470.2 (e_value=3e-19) | Symbols: RPP8, HRT, RCY1 | Disease resistance protein (CC-NBS-LRR class) family | chr5:17463130-17466658 REVERSE LENGTH=908;; (*ITAG) Solyc01g087200.2.1 (e_value=8e-118) genomic_reference:SL2.40ch01 gene_region:73888976-73892212 transcript_region:SL2.40ch01:73888976..73892212- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00044767g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|373; (*SWP) sp|Q9LU94|PP255_ARATH (e_value=2e-108) Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2;; (*TAIR) AT3G25970.1 (e_value=1e-109) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=701;; (*ITAG) Solyc01g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75938110-75940247 transcript_region:SL2.40ch01:75938110..75940247+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00044767g0004.1 protein AED:0.33 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|382; (*SWP) sp|Q9LU94|PP255_ARATH (e_value=4e-131) Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2;; (*TAIR) AT3G25970.1 (e_value=3e-132) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:9500116-9502221 REVERSE LENGTH=701;; (*ITAG) Solyc01g090510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75938110-75940247 transcript_region:SL2.40ch01:75938110..75940247+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00044767g0013.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.2|1|1|5|0|216; (*TAIR) AT1G19600.1 (e_value=8e-52) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:6779085-6780898 FORWARD LENGTH=355;; (*ITAG) Solyc04g080580.2.1 (e_value=4e-78) genomic_reference:SL2.40ch04 gene_region:62290777-62294618 transcript_region:SL2.40ch04:62290777..62294618+ go_terms:GO:0016301 functional_description:"Kinase PfkB family (AHRD V1 **** D4WID3_BACOV); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00044767g0016.1 protein AED:0.30 eAED:0.30 QI:219|0.85|0.75|1|0.71|0.75|8|0|313; (*TAIR) AT4G00026.1 (e_value=1e-97) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:11634-13285 REVERSE LENGTH=269;; (*ITAG) Solyc08g081430.2.1 (e_value=2e-180) genomic_reference:SL2.40ch08 gene_region:61664027-61670068 transcript_region:SL2.40ch08:61664027..61670068+ functional_description:"TIM21-like protein mitochondrial (AHRD V1 ***- C3KHJ2_ANOFI); contains Interpro domain(s) IPR013261 Mitochondrial inner membrane translocase complex, subunit Tim21 "; NbS00058371g0003.1 protein AED:0.31 eAED:0.33 QI:0|0.83|0.71|1|1|1|7|495|420; (*SWP) sp|Q8VZ02|BH048_ARATH (e_value=7e-64) Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1;; (*TAIR) AT2G42300.1 (e_value=6e-65) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17621542-17624635 FORWARD LENGTH=327;; (*ITAG) Solyc10g079070.1.1 (e_value=2e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60025990-60030733 transcript_region:SL2.40ch10:60025990..60030733+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00058371g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|172; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=1e-78) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=8e-52) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc10g079080.1.1 (e_value=3e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60031853-60032371 transcript_region:SL2.40ch10:60031853..60032371- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00041043g0006.1 protein AED:0.10 eAED:0.10 QI:130|0.83|0.85|1|0.66|0.71|7|755|186; (*TAIR) AT1G02475.1 (e_value=4e-54) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:514110-515331 REVERSE LENGTH=219;; (*ITAG) Solyc01g068020.2.1 (e_value=1e-72) genomic_reference:SL2.40ch01 gene_region:69454142-69456938 transcript_region:SL2.40ch01:69454142..69456938- functional_description:"Cyclase/dehydrase (AHRD V1 ***- B6T2Z5_MAIZE); contains Interpro domain(s) IPR005031 Streptomyces cyclase/dehydrase "; NbS00041043g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|276; (*ITAG) Solyc01g068040.1.1 (e_value=7e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:69461769-69462605 transcript_region:SL2.40ch01:69461769..69462605+ go_terms:GO:0003676 functional_description:"3-5 exonuclease/ nucleic acid binding protein (AHRD V1 ***- B6TKY2_MAIZE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00041043g0009.1 protein AED:0.13 eAED:0.14 QI:472|0.66|0.75|1|0.33|0.5|4|304|167; (*SWP) sp|Q9FYN7|P2C02_ORYSJ (e_value=7e-75) Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1;; (*TAIR) AT3G62260.2 (e_value=3e-68) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=384;; (*ITAG) Solyc01g068000.2.1 (e_value=9e-109) genomic_reference:SL2.40ch01 gene_region:69442214-69447222 transcript_region:SL2.40ch01:69442214..69447222+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00032590g0005.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.75|0.33|0.25|4|0|414; (*SWP) sp|C0LGE4|Y1124_ARATH (e_value=3e-38) Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=2e-59) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00032590g0004.1 protein AED:0.30 eAED:0.33 QI:0|0|0|1|0|0|4|0|496; (*SWP) sp|C0LGT6|EFR_ARATH (e_value=2e-33) LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1;; (*TAIR) AT2G34930.1 (e_value=8e-41) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00027994g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.9|0.90|1|1|1|11|244|588; (*SWP) sp|Q96321|IMA1_ARATH (e_value=0.0) Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2;; (*TAIR) AT4G16143.2 (e_value=0.0) | Symbols: IMPA-2 | importin alpha isoform 2 | chr4:9134450-9137134 REVERSE LENGTH=535;; (*ITAG) Solyc08g041890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00025363g0003.1 protein AED:0.00 eAED:0.00 QI:65|1|1|1|1|1|2|119|174; (*TAIR) AT2G15780.1 (e_value=3e-50) | Symbols: | Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257;; (*ITAG) Solyc10g050690.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:45839316-45840231 transcript_region:SL2.40ch10:45839316..45840231- go_terms:GO:0009055 functional_description:"Copper ion binding protein (AHRD V1 ***- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00043298g0007.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|367; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=6e-18) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=4e-19) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g055750.2.1 (e_value=3e-93) genomic_reference:SL2.40ch05 gene_region:64410352-64413767 transcript_region:SL2.40ch05:64410352..64413767- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00060818g0004.1 protein AED:0.11 eAED:0.11 QI:168|1|0.75|1|0.66|0.75|4|696|580; (*SWP) sp|Q8BGH2|SAM50_MOUSE (e_value=3e-17) Sorting and assembly machinery component 50 homolog OS=Mus musculus GN=Samm50 PE=1 SV=1;; (*TAIR) AT5G05520.1 (e_value=0.0) | Symbols: | Outer membrane OMP85 family protein | chr5:1632912-1635104 FORWARD LENGTH=524;; (*ITAG) Solyc04g079270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61377082-61381940 transcript_region:SL2.40ch04:61377082..61381940- go_terms:GO:0019867 functional_description:"Sorting and assembly machinery component 50 homolog (AHRD V1 **-- B5X2H0_SALSA); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00005596g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0.25|1|1|1|4|0|127; (*SWP) sp|Q3UJZ3|ARMC7_MOUSE (e_value=8e-29) Armadillo repeat-containing protein 7 OS=Mus musculus GN=Armc7 PE=2 SV=2;; (*TAIR) AT5G37290.1 (e_value=2e-55) | Symbols: | ARM repeat superfamily protein | chr5:14762730-14764097 FORWARD LENGTH=180;; (*ITAG) Solyc04g071330.2.1 (e_value=1e-71) genomic_reference:SL2.40ch04 gene_region:55855012-55859981 transcript_region:SL2.40ch04:55855012..55859981+ go_terms:GO:0005488 functional_description:"Armadillo repeat-containing protein 7 (AHRD V1 **-- ARMC7_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00005596g0006.1 protein AED:0.26 eAED:0.28 QI:0|0|0|0.44|1|1|9|0|756; (*TAIR) AT5G59830.2 (e_value=1e-56) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24105423-24107071 FORWARD LENGTH=425;; (*ITAG) Solyc09g010350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3735969-3738130 transcript_region:SL2.40ch09:3735969..3738130+ go_terms:GO:0033897 functional_description:"Genomic DNA chromosome 5 P1 clone MSH12 (AHRD V1 **-- Q9FNA6_ARATH)"; GO:0033897 NbS00005596g0004.1 protein AED:0.14 eAED:0.14 QI:241|1|1|1|0.8|0.66|6|577|308; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-48) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT2G37460.1 (e_value=1e-128) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr2:15726667-15729010 REVERSE LENGTH=380;; (*ITAG) Solyc09g010360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3740101-3743295 transcript_region:SL2.40ch09:3740101..3743295- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9ZUS1_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00005596g0013.1 protein AED:0.27 eAED:0.27 QI:390|1|1|1|1|1|7|251|128; (*SWP) sp|O24466|RAE1A_ARATH (e_value=7e-71) Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1;; (*TAIR) AT3G53610.3 (e_value=6e-72) | Symbols: ATRAB8, RAB8 | RAB GTPase homolog 8 | chr3:19876531-19878264 REVERSE LENGTH=216;; (*ITAG) Solyc09g010370.2.1 (e_value=1e-78) genomic_reference:SL2.40ch09 gene_region:3753893-3759018 transcript_region:SL2.40ch09:3753893..3759018- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C123_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00045671g0008.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|404; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=1e-72) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=8e-74) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc01g104810.2.1 (e_value=3e-108) genomic_reference:SL2.40ch01 gene_region:84923962-84924859 transcript_region:SL2.40ch01:84923962..84924859+ functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00022808g0006.1 protein AED:0.41 eAED:0.81 QI:6|0|0.5|1|1|0.5|2|0|64 NbS00022808g0004.1 protein AED:0.52 eAED:0.73 QI:0|0|0|1|0|0|2|0|40 NbS00003916g0005.1 protein AED:0.13 eAED:0.15 QI:30|1|0.33|1|1|1|3|0|535; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=4e-97) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G55110.1 (e_value=2e-106) | Symbols: AtIDD7, IDD7 | indeterminate(ID)-domain 7 | chr1:20560406-20562625 REVERSE LENGTH=455;; (*ITAG) Solyc03g121660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63812805-63815522 transcript_region:SL2.40ch03:63812805..63815522- go_terms:GO:0003700 functional_description:"Zinc finger protein (AHRD V1 *-*- Q9LVQ7_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00003916g0118.1 protein AED:0.24 eAED:0.28 QI:0|0.2|0.33|0.83|0.2|0.16|6|105|476 NbS00003916g0105.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|90 NbS00003916g0115.1 protein AED:0.32 eAED:0.32 QI:199|0.66|0.75|1|1|1|4|306|128 NbS00003916g0104.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|230 NbS00003916g0120.1 protein AED:0.22 eAED:0.22 QI:213|0.81|0.75|1|0.54|0.66|12|0|316 NbS00003916g0117.1 protein AED:0.33 eAED:0.41 QI:0|0.45|0.41|1|0.45|0.66|12|0|327 NbS00012760g0104.1 protein AED:0.07 eAED:0.11 QI:0|0|0|1|0|0|3|0|140 NbS00058758g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|331; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=7e-140) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=5e-141) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00016285g0004.1 protein AED:0.21 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|297; (*ITAG) Solyc11g012740.1.1 (e_value=2e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5494026-5508912 transcript_region:SL2.40ch11:5494026..5508912- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00016285g0010.1 protein AED:0.32 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|146; (*SWP) sp|O80931|AS1_ARATH (e_value=7e-35) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1;; (*TAIR) AT2G37630.1 (e_value=5e-36) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=4e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00016285g0014.1 protein AED:0.11 eAED:0.12 QI:143|1|0.5|1|1|1|2|0|391; (*SWP) sp|Q39117|TGT2_ARATH (e_value=3e-27) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT5G47660.1 (e_value=7e-40) | Symbols: | Homeodomain-like superfamily protein | chr5:19313008-19314636 FORWARD LENGTH=398;; (*ITAG) Solyc11g012720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5485302-5487293 transcript_region:SL2.40ch11:5485302..5487293+ functional_description:"Transcription factor (Fragment) (AHRD V1 *--- D6MK04_9ASPA); contains Interpro domain(s) IPR017877 MYB-like "; NbS00016750g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|120; (*ITAG) Solyc04g026140.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:24676006-24676422 transcript_region:SL2.40ch04:24676006..24676422- functional_description:"Embryo-abundant protein (Fragment) (AHRD V1 **-- Q3I3Y8_PICGL)"; NbS00032920g0003.1 protein AED:0.21 eAED:0.21 QI:189|0.94|0.88|1|0.76|0.88|18|0|651; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=0.0) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=0.0) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc06g084250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45738918-45746453 transcript_region:SL2.40ch06:45738918..45746453+ go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00047377g0002.1 protein AED:0.16 eAED:0.16 QI:189|0|0.33|0.33|1|1|3|0|180; (*ITAG) Solyc07g006180.2.1 (e_value=1e-18) genomic_reference:SL2.40ch07 gene_region:1007742-1013158 transcript_region:SL2.40ch07:1007742..1013158- go_terms:GO:0051082,GO:0031072 functional_description:"Tetratricopeptide repeat protein 4 homolog (AHRD V1 *--- TTC4_DICDI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0051082,GO:0031072 NbS00050811g0005.1 protein AED:0.34 eAED:0.37 QI:0|0.75|0.44|1|0.62|0.66|9|0|430; (*SWP) sp|Q1IKG8|MURD_KORVE (e_value=6e-31) UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter versatilis (strain Ellin345) GN=murD PE=3 SV=1;; (*ITAG) Solyc05g012800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:5965205-5966698 transcript_region:SL2.40ch05:5965205..5966698- go_terms:GO:0005515 functional_description:"UDP-N-acetylmuramoylalanine--D-glutamate ligase (AHRD V1 ***- B8J8E6_ANAD2); contains Interpro domain(s) IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase "; GO:0005515 NbS00011318g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.83|0.57|1|1|1|7|0|609; (*SWP) sp|Q9FN69|GL3_ARATH (e_value=2e-163) Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1;; (*TAIR) AT5G41315.1 (e_value=2e-164) | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:16529457-16532866 FORWARD LENGTH=637;; (*ITAG) Solyc08g081140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61386802-61391666 transcript_region:SL2.40ch08:61386802..61391666+ go_terms:GO:0003700,GO:0042802 functional_description:"Myc-like anthocyanin regulatory protein (AHRD V1 ***- Q675M5_9ASTE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00011318g0019.1 protein AED:0.14 eAED:0.22 QI:0|0.14|0|1|0.71|0.5|8|0|842; (*TAIR) AT2G45900.1 (e_value=4e-25) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:18886069-18888674 REVERSE LENGTH=720;; (*ITAG) Solyc08g081160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61399696-61403558 transcript_region:SL2.40ch08:61399696..61403558- functional_description:"( related) (AHRD V1 *-*- Q2HTJ8_MEDTR)"; NbS00011318g0003.1 protein AED:0.37 eAED:0.37 QI:0|1|0.5|1|1|1|4|0|261; (*SWP) sp|Q2IV75|GUAA_RHOP2 (e_value=3e-103) GMP synthase [glutamine-hydrolyzing] OS=Rhodopseudomonas palustris (strain HaA2) GN=guaA PE=3 SV=1;; (*TAIR) AT1G63660.1 (e_value=2e-161) | Symbols: | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative | chr1:23604127-23607080 REVERSE LENGTH=534;; (*ITAG) Solyc08g081150.2.1 (e_value=2e-180) genomic_reference:SL2.40ch08 gene_region:61392906-61396045 transcript_region:SL2.40ch08:61392906..61396045- go_terms:GO:0019899 functional_description:"GMP synthase (AHRD V1 ***- D3KZU2_9BACT); contains Interpro domain(s) IPR001674 GMP synthase, C-terminal "; GO:0019899 NbS00011318g0005.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|1|1|2|0|209; (*SWP) sp|C0QYF1|GUAA_BRAHW (e_value=2e-44) GMP synthase [glutamine-hydrolyzing] OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=guaA PE=3 SV=1;; (*TAIR) AT1G63660.2 (e_value=2e-92) | Symbols: | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative | chr1:23604874-23607080 REVERSE LENGTH=434;; (*ITAG) Solyc08g081150.2.1 (e_value=1e-123) genomic_reference:SL2.40ch08 gene_region:61392906-61396045 transcript_region:SL2.40ch08:61392906..61396045- go_terms:GO:0019899 functional_description:"GMP synthase (AHRD V1 ***- D3KZU2_9BACT); contains Interpro domain(s) IPR001674 GMP synthase, C-terminal "; GO:0019899 NbS00011318g0004.1 protein AED:0.46 eAED:0.54 QI:0|-1|0|1|-1|1|1|0|75; (*SWP) sp|Q5WJI0|GUAA_BACSK (e_value=3e-20) GMP synthase [glutamine-hydrolyzing] OS=Bacillus clausii (strain KSM-K16) GN=guaA PE=3 SV=1;; (*TAIR) AT1G63660.1 (e_value=4e-26) | Symbols: | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative | chr1:23604127-23607080 REVERSE LENGTH=534;; (*ITAG) Solyc08g081150.2.1 (e_value=9e-31) genomic_reference:SL2.40ch08 gene_region:61392906-61396045 transcript_region:SL2.40ch08:61392906..61396045- go_terms:GO:0019899 functional_description:"GMP synthase (AHRD V1 ***- D3KZU2_9BACT); contains Interpro domain(s) IPR001674 GMP synthase, C-terminal "; GO:0019899 NbS00024696g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|0.75|4|363|245; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=3e-58) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.3 (e_value=1e-59) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015703-17016969 FORWARD LENGTH=285;; (*ITAG) Solyc10g082040.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62264261-62265744 transcript_region:SL2.40ch10:62264261..62265744- functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 **-- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00024696g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|175; (*ITAG) Solyc01g007770.2.1 (e_value=7e-74) genomic_reference:SL2.40ch01 gene_region:1927149-1927875 transcript_region:SL2.40ch01:1927149..1927875+ functional_description:"Genomic DNA chromosome 5 P1 clone MHF15 (AHRD V1 ***- Q9FNI0_ARATH)"; NbS00013689g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.91|1|0.90|0.91|12|0|421; (*SWP) sp|Q6P988|NOTUM_HUMAN (e_value=2e-23) Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2;; (*TAIR) AT3G09410.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427;; (*ITAG) Solyc10g086480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64607863-64614893 transcript_region:SL2.40ch10:64607863..64614893+ functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; NbS00025710g0001.1 protein AED:0.14 eAED:0.27 QI:690|0|0.5|1|0|0.5|2|0|173; (*TAIR) AT3G55080.1 (e_value=6e-69) | Symbols: | SET domain-containing protein | chr3:20411476-20415830 REVERSE LENGTH=463;; (*ITAG) Solyc06g036670.1.1 (e_value=6e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:23834779-23835969 transcript_region:SL2.40ch06:23834779..23835969- functional_description:"mRNA clone RAFL25-03-G23 (AHRD V1 *--- Q67YE9_ARATH)"; NbS00025710g0009.1 protein AED:0.19 eAED:0.19 QI:17|0.9|0.90|1|1|1|11|0|466; (*SWP) sp|Q9LFT8|CDKC1_ARATH (e_value=0.0) Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1;; (*TAIR) AT5G10270.1 (e_value=0.0) | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505;; (*ITAG) Solyc06g073630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41813794-41819775 transcript_region:SL2.40ch06:41813794..41819775+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00022415g0009.1 protein AED:0.09 eAED:0.10 QI:0|1|0.75|1|1|1|4|442|385; (*TAIR) AT3G59670.1 (e_value=6e-76) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:22040485-22042380 FORWARD LENGTH=517;; (*ITAG) Solyc03g062900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29800086-29805392 transcript_region:SL2.40ch03:29800086..29805392+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022415g0016.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0|0|2|0|249; (*SWP) sp|P92535|M1010_ARATH (e_value=6e-27) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*TAIR) AT2G07674.1 (e_value=3e-34) | Symbols: | Unknown conserved protein | chr2:3269151-3269906 FORWARD LENGTH=251;; (*ITAG) Solyc11g056330.1.1 (e_value=5e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00022415g0017.1 protein AED:0.42 eAED:0.62 QI:0|0|0|1|0|0|2|0|60; (*ITAG) Solyc11g045430.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37811629-37814500 transcript_region:SL2.40ch11:37811629..37814500- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00059790g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|473; (*SWP) sp|O80345|CDKF1_ARATH (e_value=0.0) Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1;; (*TAIR) AT4G28980.1 (e_value=0.0) | Symbols: CDKF;1, CAK1AT | CDK-activating kinase 1AT | chr4:14288471-14290102 FORWARD LENGTH=479;; (*ITAG) Solyc12g007200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1629539-1632295 transcript_region:SL2.40ch12:1629539..1632295- go_terms:GO:0006468 functional_description:"Cell division protein kinase 20 (AHRD V1 *-*- CDK20_DANRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021038g0004.1 protein AED:0.00 eAED:0.00 QI:303|1|1|1|0.33|0.25|4|251|564; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=6e-44) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=4e-45) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc12g038520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35933880-35935930 transcript_region:SL2.40ch12:35933880..35935930- go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00023093g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|190; (*SWP) sp|Q9XI33|WIN1_ARATH (e_value=2e-40) Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1;; (*TAIR) AT1G15360.1 (e_value=1e-41) | Symbols: SHN1, WIN1 | Integrase-type DNA-binding superfamily protein | chr1:5283609-5284506 FORWARD LENGTH=199;; (*ITAG) Solyc03g116610.2.1 (e_value=3e-52) genomic_reference:SL2.40ch03 gene_region:60004948-60006047 transcript_region:SL2.40ch03:60004948..60006047- go_terms:GO:0043565,GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0043565,GO:0003700 NbS00023093g0026.1 protein AED:0.01 eAED:0.01 QI:468|1|1|1|1|1|2|164|135; (*TAIR) AT1G52565.1 (e_value=2e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19580061-19580511 REVERSE LENGTH=129;; (*ITAG) Solyc03g116630.2.1 (e_value=3e-69) genomic_reference:SL2.40ch03 gene_region:60018861-60019985 transcript_region:SL2.40ch03:60018861..60019985+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023093g0032.1 protein AED:0.03 eAED:0.03 QI:184|1|0.5|1|0|0.5|2|0|144; (*ITAG) Solyc03g116660.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:60031325-60034050 transcript_region:SL2.40ch03:60031325..60034050+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023093g0023.1 protein AED:0.03 eAED:0.03 QI:63|1|1|1|1|1|3|235|316; (*TAIR) AT5G20190.1 (e_value=2e-44) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6814093-6815171 FORWARD LENGTH=290;; (*ITAG) Solyc03g116670.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:60036546-60038822 transcript_region:SL2.40ch03:60036546..60038822+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00023093g0025.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|0.66|1|1|3|142|161; (*SWP) sp|Q9SSQ8|HS26M_ARATH (e_value=2e-29) 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1;; (*TAIR) AT1G52560.1 (e_value=1e-30) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19574783-19575766 REVERSE LENGTH=232; NbS00023093g0035.1 protein AED:0.07 eAED:0.07 QI:193|1|0.8|1|0.5|0.4|5|41|810; (*SWP) sp|P93400|PLDA1_TOBAC (e_value=0.0) Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2;; (*TAIR) AT3G15730.1 (e_value=0.0) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc03g116620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60013144-60016621 transcript_region:SL2.40ch03:60013144..60016621+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00023093g0022.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0|1|0.66|0.5|4|0|568; (*SWP) sp|Q9LW00|MBD11_ARATH (e_value=4e-36) Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1;; (*TAIR) AT3G15790.1 (e_value=3e-37) | Symbols: MBD11, ATMBD11 | methyl-CPG-binding domain 11 | chr3:5343209-5344386 FORWARD LENGTH=254;; (*ITAG) Solyc03g116690.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:60043434-60044196 transcript_region:SL2.40ch03:60043434..60044196+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- D1MWY8_CITLA); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00023093g0036.1 protein AED:0.28 eAED:0.32 QI:0|0|0|0.8|0|0|10|0|477; (*ITAG) Solyc03g122200.1.1 (e_value=7e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00020933g0005.1 protein AED:0.28 eAED:0.28 QI:218|0.75|0.70|1|0.62|0.70|17|0|652; (*SWP) sp|Q99797|MIPEP_HUMAN (e_value=4e-91) Mitochondrial intermediate peptidase OS=Homo sapiens GN=MIPEP PE=1 SV=2;; (*TAIR) AT5G51540.1 (e_value=0.0) | Symbols: | Zincin-like metalloproteases family protein | chr5:20932071-20936284 FORWARD LENGTH=706;; (*ITAG) Solyc03g083580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47077199-47090326 transcript_region:SL2.40ch03:47077199..47090326- go_terms:GO:0004222 functional_description:"Mitochondrial intermediate peptidase (AHRD V1 **-- Q17F93_AEDAE); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0004222 NbS00003172g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|450; (*SWP) sp|Q9LIS3|GAE6_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1;; (*TAIR) AT3G23820.1 (e_value=0.0) | Symbols: GAE6 | UDP-D-glucuronate 4-epimerase 6 | chr3:8603645-8605027 FORWARD LENGTH=460;; (*ITAG) Solyc09g092330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66806933-66808291 transcript_region:SL2.40ch09:66806933..66808291- go_terms:GO:0042803 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0042803 NbS00025222g0003.1 protein AED:0.07 eAED:0.07 QI:163|0.85|0.87|1|1|0.87|8|200|986; (*SWP) sp|O94913|PCF11_HUMAN (e_value=3e-17) Pre-mRNA cleavage complex 2 protein Pcf11 OS=Homo sapiens GN=PCF11 PE=1 SV=3;; (*TAIR) AT4G04885.1 (e_value=1e-101) | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808;; (*ITAG) Solyc12g094490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63044375-63052170 transcript_region:SL2.40ch12:63044375..63052170+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR008942 ENTH/VHS "; GO:0005622 NbS00005812g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|116 NbS00005812g0003.1 protein AED:0.16 eAED:0.16 QI:59|1|1|1|1|1|4|239|357; (*SWP) sp|P30359|CADH1_TOBAC (e_value=0.0) Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1;; (*TAIR) AT3G19450.1 (e_value=0.0) | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like zinc-binding alcohol dehydrogenase family protein | chr3:6744859-6747005 FORWARD LENGTH=365;; (*ITAG) Solyc01g107590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86851979-86855737 transcript_region:SL2.40ch01:86851979..86855737+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** C1IC55_GOSHI); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbC26264961g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|77 NbS00008852g0005.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|112; (*SWP) sp|P13240|DR206_PEA (e_value=5e-46) Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=2 SV=2;; (*TAIR) AT1G64160.1 (e_value=1e-41) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:23814063-23814611 FORWARD LENGTH=182;; (*ITAG) Solyc08g081780.1.1 (e_value=2e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61908290-61908859 transcript_region:SL2.40ch08:61908290..61908859- functional_description:"Dirigent protein (AHRD V1 ***- Q9SDR7_FORIN); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00008852g0008.1 protein AED:0.35 eAED:0.35 QI:129|0.81|0.83|1|0.81|0.91|12|184|397; (*SWP) sp|Q94AX5|GDT11_ARATH (e_value=3e-83) GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2;; (*TAIR) AT1G64150.1 (e_value=2e-84) | Symbols: | Uncharacterized protein family (UPF0016) | chr1:23809047-23812579 REVERSE LENGTH=370;; (*ITAG) Solyc08g081770.2.1 (e_value=1e-161) genomic_reference:SL2.40ch08 gene_region:61901463-61907902 transcript_region:SL2.40ch08:61901463..61907902- go_terms:GO:0005515 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 *--- B9GMI0_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0005515 NbS00036313g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|124; (*TAIR) AT1G63380.1 (e_value=5e-35) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:23505582-23506504 FORWARD LENGTH=282;; (*ITAG) Solyc12g100220.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65362962-65363931 transcript_region:SL2.40ch12:65362962..65363931+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **-- B1M654_METRJ); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00038607g0004.1 protein AED:0.25 eAED:0.32 QI:0|0|0|1|0|0|3|0|369; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=6e-145) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=6e-110) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=5e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00038607g0003.1 protein AED:0.35 eAED:0.43 QI:0|0|0|1|0|0|2|0|150; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=1e-33) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=2e-33) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00002732g0004.1 protein AED:0.27 eAED:0.32 QI:0|0|0|0.5|0|0|2|0|117 NbS00031286g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|453; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=0.0) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT2G23450.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:9988926-9991244 REVERSE LENGTH=708;; (*ITAG) Solyc02g090110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46307613-46313725 transcript_region:SL2.40ch02:46307613..46313725- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00031286g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|151; (*ITAG) Solyc02g090100.1.1 (e_value=9e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:46306913-46307401 transcript_region:SL2.40ch02:46306913..46307401+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000822g0011.1 protein AED:0.24 eAED:0.24 QI:129|1|1|1|1|1|9|316|411; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=3e-177) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=3e-178) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc02g068070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32696348-32701199 transcript_region:SL2.40ch02:32696348..32701199+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00000822g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0.85|1|1|1|7|0|768; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=3e-148) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT5G14210.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:4578503-4581374 REVERSE LENGTH=775;; (*ITAG) Solyc02g068060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32685906-32690149 transcript_region:SL2.40ch02:32685906..32690149+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000822g0009.1 protein AED:0.21 eAED:0.21 QI:306|1|0.83|1|1|1|6|0|786; (*SWP) sp|P92942|CLCB_ARATH (e_value=0.0) Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1;; (*TAIR) AT3G27170.1 (e_value=0.0) | Symbols: CLC-B, ATCLC-B | chloride channel B | chr3:10024147-10026921 FORWARD LENGTH=780;; (*ITAG) Solyc02g068080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32703505-32707626 transcript_region:SL2.40ch02:32703505..32707626- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00009726g0002.1 protein AED:0.30 eAED:0.30 QI:12|0|0|0.5|0|0|2|0|107 NbS00015017g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|1077|516; (*SWP) sp|Q9LW63|PP251_ARATH (e_value=3e-107) Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1;; (*TAIR) AT3G23330.1 (e_value=2e-108) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8347200-8349347 FORWARD LENGTH=715;; (*ITAG) Solyc09g090780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65549203-65551101 transcript_region:SL2.40ch09:65549203..65551101- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00016495g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|160 NbS00016495g0114.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|0.66|0.25|4|383|562 NbS00016495g0115.1 protein AED:0.81 eAED:0.88 QI:0|0|0|0.4|0.75|0.6|5|0|132 NbS00016495g0116.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|310 NbC24154579g0002.1 protein AED:0.07 eAED:0.11 QI:11|-1|0|1|-1|0|1|0|94; (*SWP) sp|O04009|DCAM_TOBAC (e_value=2e-55) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1;; (*TAIR) AT3G25570.2 (e_value=3e-21) | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349;; (*ITAG) Solyc05g010420.1.1 (e_value=2e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00020370g0004.1 protein AED:0.10 eAED:0.10 QI:27|1|0.5|1|1|1|2|0|223; (*SWP) sp|P57681|PCYOX_ARATH (e_value=1e-67) Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1;; (*TAIR) AT5G63910.1 (e_value=1e-68) | Symbols: FCLY | farnesylcysteine lyase | chr5:25572053-25574077 REVERSE LENGTH=500;; (*ITAG) Solyc12g088020.1.1 (e_value=6e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61969217-61970695 transcript_region:SL2.40ch12:61969217..61970695+ go_terms:GO:0001735 functional_description:"Prenylcysteine oxidase 1 (AHRD V1 **** B7ZTK4_XENTR); contains Interpro domain(s) IPR010795 Prenylcysteine lyase "; GO:0001735 NbS00005761g0002.1 protein AED:0.27 eAED:0.27 QI:109|1|1|1|1|1|2|215|77; (*SWP) sp|O65740|DEF2_CAPAN (e_value=7e-25) Defensin J1-2 OS=Capsicum annuum PE=1 SV=1;; (*TAIR) AT2G02100.1 (e_value=6e-18) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc04g008470.2.1 (e_value=1e-20) genomic_reference:SL2.40ch04 gene_region:2087094-2089108 transcript_region:SL2.40ch04:2087094..2089108+ go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N682_SOLPI); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00007273g0005.1 protein AED:0.17 eAED:0.17 QI:71|1|0.75|1|1|1|4|0|142; (*SWP) sp|Q8RUN2|LOG1_ARATH (e_value=1e-61) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1;; (*TAIR) AT2G28305.1 (e_value=8e-63) | Symbols: LOG1, ATLOG1 | Putative lysine decarboxylase family protein | chr2:12081186-12084307 FORWARD LENGTH=213;; (*ITAG) Solyc11g069570.1.1 (e_value=1e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51273029-51276687 transcript_region:SL2.40ch11:51273029..51276687- functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00007031g0013.1 protein AED:0.37 eAED:0.72 QI:0|0.5|0|1|0.5|0.33|3|0|97 NbS00007031g0012.1 protein AED:0.27 eAED:0.45 QI:0|0|0|1|0|0|3|0|176; (*ITAG) Solyc08g074530.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00035720g0004.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0.25|0.6|5|0|389; (*TAIR) AT3G56750.1 (e_value=1e-161) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41150.2); Has 128 Blast hits to 128 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr3:21018326-21020192 REVERSE LENGTH=403;; (*ITAG) Solyc10g078400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59552414-59557141 transcript_region:SL2.40ch10:59552414..59557141+ functional_description:"Os03g0366700 protein (Fragment) (AHRD V1 *-*- Q0DRP4_ORYSJ)"; NbS00024908g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|122; (*SWP) sp|P32295|ARG7_VIGRR (e_value=4e-20) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=1e-51) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc04g081270.1.1 (e_value=5e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62890273-62890599 transcript_region:SL2.40ch04:62890273..62890599- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00032242g0007.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0.33|0|4|0|698; (*SWP) sp|Q67A25|NCS_THLFG (e_value=6e-19) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*TAIR) AT3G07210.1 (e_value=3e-138) | Symbols: | unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:2293000-2295119 REVERSE LENGTH=547;; (*ITAG) Solyc09g059470.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:50128936-50132747 transcript_region:SL2.40ch09:50128936..50132747- go_terms:GO:0003824 functional_description:"Os01g0917200 protein (Fragment) (AHRD V1 ***- Q0JGL5_ORYSJ); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00033276g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|79; (*TAIR) AT1G27070.1 (e_value=2e-23) | Symbols: | 5'-AMP-activated protein kinase-related | chr1:9396945-9399225 REVERSE LENGTH=532;; (*ITAG) Solyc01g010470.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:5362049-5364988 transcript_region:SL2.40ch01:5362049..5364988+ functional_description:"Isoamylase N-terminal domain containing protein (AHRD V1 ***- Q6AVV5_ORYSJ)"; NbS00033276g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|162; (*TAIR) AT3G45210.1 (e_value=8e-47) | Symbols: | Protein of unknown function, DUF584 | chr3:16557482-16557928 REVERSE LENGTH=148;; (*ITAG) Solyc11g069450.1.1 (e_value=8e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51115589-51116110 transcript_region:SL2.40ch11:51115589..51116110+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 **-- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00000844g0011.1 protein AED:0.07 eAED:0.07 QI:121|0.75|0.6|1|1|1|5|176|490; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=6e-110) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=5e-121) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc02g076710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36418834-36421805 transcript_region:SL2.40ch02:36418834..36421805- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00000844g0013.1 protein AED:0.18 eAED:0.21 QI:0|0.5|0.2|1|1|0.8|5|0|368; (*SWP) sp|Q9LM66|XCP2_ARATH (e_value=2e-88) Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2;; (*TAIR) AT1G20850.1 (e_value=1e-89) | Symbols: XCP2 | xylem cysteine peptidase 2 | chr1:7252208-7253537 FORWARD LENGTH=356;; (*ITAG) Solyc02g076750.1.1 (e_value=8e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36434825-36437024 transcript_region:SL2.40ch02:36434825..36437024- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00000844g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|191; (*TAIR) AT1G29195.1 (e_value=4e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1); Has 180 Blast hits to 180 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10202673-10203254 REVERSE LENGTH=193;; (*ITAG) Solyc03g006160.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:818015-818560 transcript_region:SL2.40ch03:818015..818560+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000844g0016.1 protein AED:0.30 eAED:0.32 QI:0|0.78|0.8|1|0.71|0.86|15|187|746; (*SWP) sp|Q05609|CTR1_ARATH (e_value=5e-68) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT2G31010.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:13194939-13199642 FORWARD LENGTH=775;; (*ITAG) Solyc02g076780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36457518-36480448 transcript_region:SL2.40ch02:36457518..36480448+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LCX3_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000844g0014.1 protein AED:0.44 eAED:0.76 QI:0|0|0|1|0|0|2|0|65 NbS00011422g0002.1 protein AED:0.08 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|194; (*TAIR) AT5G12340.1 (e_value=2e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3992948-3993610 REVERSE LENGTH=220;; (*ITAG) Solyc04g057830.1.1 (e_value=1e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:54085213-54085833 transcript_region:SL2.40ch04:54085213..54085833+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011422g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.4|1|0.75|0.8|5|721|292; (*ITAG) Solyc05g055830.2.1 (e_value=2e-160) genomic_reference:SL2.40ch05 gene_region:64455892-64463450 transcript_region:SL2.40ch05:64455892..64463450+ go_terms:GO:0003676 functional_description:"R3H domain-containing protein 2 (AHRD V1 *--- R3HD2_BOVIN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00011422g0008.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|105; (*ITAG) Solyc10g049960.1.1 (e_value=3e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:42759216-42760454 transcript_region:SL2.40ch10:42759216..42760454- functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00011422g0016.1 protein AED:0.56 eAED:0.56 QI:0|0.25|0|0.6|0.75|0.8|5|0|305; (*ITAG) Solyc01g059760.1.1 (e_value=9e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003000g0004.1 protein AED:0.25 eAED:0.30 QI:0|0.14|0|1|0|0.25|8|0|242; (*ITAG) Solyc01g073870.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00039815g0004.1 protein AED:0.03 eAED:0.03 QI:41|1|1|1|1|1|2|221|491; (*SWP) sp|Q5XEP9|KCS17_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2;; (*TAIR) AT1G04220.1 (e_value=0.0) | Symbols: KCS2 | 3-ketoacyl-CoA synthase 2 | chr1:1119853-1122483 REVERSE LENGTH=528;; (*ITAG) Solyc05g013220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6279749-6282303 transcript_region:SL2.40ch05:6279749..6282303- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00000083g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.55|0.4|0.8|0.77|0.9|10|0|355; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=5e-141) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=4e-142) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc07g021630.2.1 (e_value=1e-174) genomic_reference:SL2.40ch07 gene_region:20382871-20389446 transcript_region:SL2.40ch07:20382871..20389446- go_terms:GO:0004084 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 **** Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0004084 NbS00014626g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.5|1|1|1|4|236|315; (*TAIR) AT2G36290.1 (e_value=2e-101) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc05g055290.2.1 (e_value=3e-166) genomic_reference:SL2.40ch05 gene_region:64133774-64136904 transcript_region:SL2.40ch05:64133774..64136904- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbC23945826g0002.1 protein AED:0.26 eAED:0.67 QI:0|0|0|1|0|0|2|0|76; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=4e-38) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT3G12250.3 (e_value=3e-37) | Symbols: TGA6, BZIP45 | TGACG motif-binding factor 6 | chr3:3906573-3908583 FORWARD LENGTH=324;; (*ITAG) Solyc11g064950.1.1 (e_value=4e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00011727g0006.1 protein AED:0.21 eAED:0.21 QI:619|1|1|1|0.77|0.7|10|364|128; (*SWP) sp|P28186|RAE1C_ARATH (e_value=3e-74) Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1;; (*TAIR) AT5G59840.1 (e_value=8e-76) | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216;; (*ITAG) Solyc11g073050.1.1 (e_value=5e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53248484-53252238 transcript_region:SL2.40ch11:53248484..53252238+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C362_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00011727g0005.1 protein AED:0.40 eAED:0.40 QI:87|1|0.33|1|0.5|0.66|3|0|98; (*SWP) sp|Q9FIJ2|NDUA2_ARATH (e_value=1e-40) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Arabidopsis thaliana GN=At5g47890 PE=2 SV=1;; (*TAIR) AT5G47890.1 (e_value=1e-41) | Symbols: | NADH-ubiquinone oxidoreductase B8 subunit, putative | chr5:19388806-19390409 FORWARD LENGTH=97;; (*ITAG) Solyc06g075810.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:43496989-43498602 transcript_region:SL2.40ch06:43496989..43498602- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** C1BWM4_ESOLU); contains Interpro domain(s) IPR016464 NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 "; GO:0008137 NbS00036203g0005.1 protein AED:0.04 eAED:0.04 QI:8|0.75|0.8|1|0.75|0.6|5|261|161; (*SWP) sp|Q0WPT7|Y2104_ARATH (e_value=9e-67) Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1;; (*TAIR) AT2G41040.1 (e_value=7e-68) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:17121499-17123064 FORWARD LENGTH=352;; (*ITAG) Solyc07g007300.2.1 (e_value=5e-98) genomic_reference:SL2.40ch07 gene_region:2023709-2027998 transcript_region:SL2.40ch07:2023709..2027998+ go_terms:GO:0008152 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-*- A1HNK4_9FIRM); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00033084g0007.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|371; (*ITAG) Solyc05g013540.1.1 (e_value=5e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:6814092-6815252 transcript_region:SL2.40ch05:6814092..6815252+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor ERF086 (AHRD V1 *-*- D7LXW6_ARALY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00015066g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|0.6|1|1|1|5|0|197; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=3e-68) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT3G02800.1 (e_value=7e-89) | Symbols: | Tyrosine phosphatase family protein | chr3:606638-607704 REVERSE LENGTH=203;; (*ITAG) Solyc04g056340.2.1 (e_value=3e-125) genomic_reference:SL2.40ch04 gene_region:53237131-53239123 transcript_region:SL2.40ch04:53237131..53239123+ go_terms:GO:0005515,GO:0004721 functional_description:"Tyrosine phosphatase family protein (AHRD V1 **** B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0005515,GO:0004721 NbS00019891g0006.1 protein AED:0.14 eAED:0.14 QI:345|0.88|0.72|1|0.94|0.94|18|201|992; (*SWP) sp|Q2U0S9|MCD4_ASPOR (e_value=0.0) GPI ethanolamine phosphate transferase 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mcd4 PE=3 SV=1;; (*TAIR) AT3G01380.1 (e_value=0.0) | Symbols: | transferases;sulfuric ester hydrolases;catalytics;transferases | chr3:144288-149828 REVERSE LENGTH=993;; (*ITAG) Solyc02g087170.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44230971-44235207 transcript_region:SL2.40ch02:44230971..44235207+ go_terms:GO:0005789 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 ***- C1GMZ7_PARBD); contains Interpro domain(s) IPR017852 GPI ethanolamine phosphate transferase 1, C-terminal "; GO:0005789 NbS00036150g0001.1 protein AED:0.42 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|204; (*TAIR) AT2G35230.1 (e_value=9e-31) | Symbols: IKU1 | VQ motif-containing protein | chr2:14842871-14844079 FORWARD LENGTH=402;; (*ITAG) Solyc06g061190.1.1 (e_value=5e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:35583227-35584333 transcript_region:SL2.40ch06:35583227..35584333- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 *-*- D7KHM1_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00036150g0004.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|80 NbS00060939g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|1|1|3|390|332; (*SWP) sp|Q9XHM5|G2OX2_PEA (e_value=1e-125) Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1;; (*TAIR) AT1G02400.1 (e_value=9e-101) | Symbols: ATGA2OX4, ATGA2OX6, DTA1, GA2OX6 | gibberellin 2-oxidase 6 | chr1:486964-489391 FORWARD LENGTH=329;; (*ITAG) Solyc01g079200.2.1 (e_value=4e-173) genomic_reference:SL2.40ch01 gene_region:70793716-70796826 transcript_region:SL2.40ch01:70793716..70796826- go_terms:GO:0004062,GO:0045543 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL7_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0004062,GO:0045543 NbS00060939g0007.1 protein AED:0.20 eAED:0.20 QI:213|0.5|0.44|0.66|0.87|0.88|9|0|276; (*SWP) sp|Q9JI44|DMAP1_MOUSE (e_value=2e-29) DNA methyltransferase 1-associated protein 1 OS=Mus musculus GN=Dmap1 PE=1 SV=1;; (*TAIR) AT2G47210.1 (e_value=3e-116) | Symbols: | myb-like transcription factor family protein | chr2:19379039-19382204 FORWARD LENGTH=441;; (*ITAG) Solyc01g079210.2.1 (e_value=2e-171) genomic_reference:SL2.40ch01 gene_region:70807853-70815294 transcript_region:SL2.40ch01:70807853..70815294+ go_terms:GO:0003714 functional_description:"SWR1-complex protein 4 (AHRD V1 *--- A8NYM2_COPC7); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003714 NbS00011065g0005.1 protein AED:0.05 eAED:0.05 QI:126|1|0.90|1|0.9|0.81|11|426|927; (*SWP) sp|Q9FV65|CAPPC_FLATR (e_value=0.0) Phosphoenolpyruvate carboxylase 2 OS=Flaveria trinervia GN=PPCC PE=1 SV=1;; (*TAIR) AT3G14940.1 (e_value=0.0) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968;; (*ITAG) Solyc10g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1686062-1694134 transcript_region:SL2.40ch10:1686062..1694134- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 ***- A6YM32_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00034411g0001.1 protein AED:0.38 eAED:0.52 QI:0|0|0|0.6|1|1|5|0|152; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-62) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT2G34160.1 (e_value=7e-64) | Symbols: | Alba DNA/RNA-binding protein | chr2:14426283-14427220 FORWARD LENGTH=130;; (*ITAG) Solyc06g066100.2.1 (e_value=3e-56) genomic_reference:SL2.40ch06 gene_region:37826995-37830559 transcript_region:SL2.40ch06:37826995..37830559- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00048110g0007.1 protein AED:0.08 eAED:0.08 QI:349|1|1|1|0.75|0.55|9|250|1138; (*SWP) sp|C6L7U1|LIN1_LOTJA (e_value=3e-25) Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2;; (*TAIR) AT5G42340.1 (e_value=4e-12) | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16930367 REVERSE LENGTH=660;; (*ITAG) Solyc01g006380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1012883-1014486 transcript_region:SL2.40ch01:1012883..1014486+ functional_description:"U-box domain-containing protein (AHRD V1 ***- B6V8G2_HELAN)"; NbS00048110g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.81|0.83|0.91|0.81|0.75|12|453|461; (*SWP) sp|Q9LXT9|CALS3_ARATH (e_value=0.0) Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3;; (*TAIR) AT5G13000.1 (e_value=0.0) | Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955;; (*ITAG) Solyc01g006370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:983795-1005620 transcript_region:SL2.40ch01:983795..1005620- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00009765g0007.1 protein AED:0.07 eAED:0.07 QI:256|1|0.5|1|0|0.5|2|0|439; (*SWP) sp|Q5REA7|FADS2_PONAB (e_value=2e-40) Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00009765g0001.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|1|1|3|0|249; (*SWP) sp|O04609|WRK22_ARATH (e_value=1e-51) WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1;; (*TAIR) AT4G01250.1 (e_value=8e-53) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc01g095100.2.1 (e_value=2e-74) genomic_reference:SL2.40ch01 gene_region:78259686-78261279 transcript_region:SL2.40ch01:78259686..78261279+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00009765g0006.1 protein AED:0.45 eAED:0.45 QI:214|0|0.5|0.5|1|1|2|0|121; (*TAIR) AT2G46220.1 (e_value=5e-11) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr2:18979655-18980557 FORWARD LENGTH=241;; (*ITAG) Solyc05g050110.2.1 (e_value=7e-35) genomic_reference:SL2.40ch05 gene_region:59238355-59242617 transcript_region:SL2.40ch05:59238355..59242617+ functional_description:"cDNA clone J013073A18 full insert sequence (AHRD V1 *-*- B7EPF9_ORYSJ); contains Interpro domain(s) IPR018790 Protein of unknown function DUF2358 "; NbS00017764g0001.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|1|1|3|0|264; (*SWP) sp|P51135|UCRI5_TOBAC (e_value=5e-168) Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G13430.1 (e_value=2e-132) | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur subunit | chr5:4305414-4307399 REVERSE LENGTH=272;; (*ITAG) Solyc11g039840.1.1 (e_value=1e-151) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:26506797-26509759 transcript_region:SL2.40ch11:26506797..26509759+ go_terms:GO:0008121,GO:0046872 functional_description:"Ubiquinol-cytochrome c reductase iron-sulfur subunit (AHRD V1 **** Q38M54_SOLTU); contains Interpro domain(s) IPR005805 Rieske iron-sulphur protein, C-terminal "; GO:0008121,GO:0046872 NbS00008156g0003.1 protein AED:0.12 eAED:0.12 QI:22|1|1|1|1|1|2|294|581; (*SWP) sp|Q9SEY5|AAE2_ARATH (e_value=0.0) Probable acyl-activating enzyme 2 OS=Arabidopsis thaliana GN=AAE2 PE=2 SV=1;; (*TAIR) AT2G17650.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr2:7671041-7672936 FORWARD LENGTH=603;; (*ITAG) Solyc03g032210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8995213-8998256 transcript_region:SL2.40ch03:8995213..8998256+ go_terms:GO:0018858,GO:0016208 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858,GO:0016208 NbS00019283g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|142; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=4e-36) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=3e-37) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=6e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00010490g0001.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|215; (*SWP) sp|Q43209|PIMT_WHEAT (e_value=6e-112) Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1;; (*TAIR) AT5G50240.2 (e_value=1e-113) | Symbols: PIMT2, AtPIMT2 | protein-l-isoaspartate methyltransferase 2 | chr5:20451251-20452461 FORWARD LENGTH=306;; (*ITAG) Solyc03g111830.2.1 (e_value=4e-136) genomic_reference:SL2.40ch03 gene_region:56497562-56502317 transcript_region:SL2.40ch03:56497562..56502317+ go_terms:GO:0004719,GO:0042802 functional_description:"Protein-L-isoaspartate O-methyltransferase (AHRD V1 **** B9I3I9_POPTR); contains Interpro domain(s) IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase "; GO:0004719,GO:0042802 NbS00010490g0002.1 protein AED:0.19 eAED:0.27 QI:0|0|0.33|1|1|1|3|0|288; (*SWP) sp|P19683|ROC4_NICSY (e_value=5e-139) 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G24770.1 (e_value=1e-49) | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA binding protein | chr4:12766223-12767952 REVERSE LENGTH=329;; (*ITAG) Solyc03g111840.2.1 (e_value=6e-81) genomic_reference:SL2.40ch03 gene_region:56501989-56506255 transcript_region:SL2.40ch03:56501989..56506255- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 **-- PAP1L_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00046269g0003.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.5|0.75|1|1|4|0|226; (*TAIR) AT1G07840.3 (e_value=3e-26) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426131 FORWARD LENGTH=279;; (*ITAG) Solyc04g076560.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00029313g0003.1 protein AED:0.04 eAED:0.04 QI:61|1|1|1|0.57|0.62|8|184|510; (*SWP) sp|P22503|GUN_PHAVU (e_value=0.0) Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2;; (*TAIR) AT4G09740.1 (e_value=0.0) | Symbols: AtGH9B14, GH9B14 | glycosyl hydrolase 9B14 | chr4:6142706-6145003 REVERSE LENGTH=478;; (*ITAG) Solyc08g081620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61777928-61781480 transcript_region:SL2.40ch08:61777928..61781480- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00024921g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|250; (*TAIR) AT2G15760.1 (e_value=1e-33) | Symbols: | Protein of unknown function (DUF1645) | chr2:6865807-6866754 REVERSE LENGTH=315;; (*ITAG) Solyc01g108440.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:87531095-87532380 transcript_region:SL2.40ch01:87531095..87532380- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00005559g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|158; (*TAIR) AT4G04630.1 (e_value=1e-25) | Symbols: | Protein of unknown function, DUF584 | chr4:2332163-2332669 REVERSE LENGTH=168;; (*ITAG) Solyc02g080580.1.1 (e_value=5e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39357037-39357504 transcript_region:SL2.40ch02:39357037..39357504+ functional_description:"Nuclear protein (AHRD V1 *-*- B6U7S5_MAIZE); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00005559g0005.1 protein AED:0.18 eAED:0.18 QI:278|0.8|0.75|0.93|0.86|0.75|16|0|1248; (*SWP) sp|Q43846|SSY3_SOLTU (e_value=0.0) Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1;; (*TAIR) AT1G11720.2 (e_value=0.0) | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094;; (*ITAG) Solyc02g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39335872-39353189 transcript_region:SL2.40ch02:39335872..39353189+ go_terms:GO:0009011 functional_description:"Glycogen synthase (AHRD V1 *-** D4ZXV2_SPIPL); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0009011 NbS00033549g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.25|1|1|4|0|169; (*TAIR) AT1G05410.1 (e_value=2e-24) | Symbols: | Protein of unknown function (DUF1423) | chr1:1585504-1587268 REVERSE LENGTH=471;; (*ITAG) Solyc06g054170.1.1 (e_value=2e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33470327-33470725 transcript_region:SL2.40ch06:33470327..33470725- functional_description:"Calmodulin protein kinase (Fragment) (AHRD V1 ***- D3K3H9_LONJA)"; NbS00033549g0005.1 protein AED:0.27 eAED:0.28 QI:0|0.33|0.25|0.75|0.66|0.5|4|0|362; (*TAIR) AT1G05410.2 (e_value=4e-87) | Symbols: | Protein of unknown function (DUF1423) | chr1:1585504-1587268 REVERSE LENGTH=444;; (*ITAG) Solyc09g082140.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63367834-63372156 transcript_region:SL2.40ch09:63367834..63372156+ functional_description:"CDPK adapter protein 1 (AHRD V1 ***- Q94F64_MESCR)"; NbS00061185g0003.1 protein AED:0.26 eAED:0.26 QI:18|0.33|0.42|0.85|0.66|0.85|7|371|395; (*SWP) sp|Q0DA50|C3H45_ORYSJ (e_value=5e-35) Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1;; (*TAIR) AT4G11970.2 (e_value=1e-118) | Symbols: | YTH family protein | chr4:7181223-7183265 FORWARD LENGTH=359;; (*ITAG) Solyc08g007730.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2230630-2237873 transcript_region:SL2.40ch08:2230630..2237873- functional_description:"YTH domain containing 1 (AHRD V1 *-*- Q29RQ7_BOVIN); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00005245g0005.1 protein AED:0.00 eAED:0.00 QI:133|1|1|1|1|1|3|564|91; (*ITAG) Solyc06g074540.2.1 (e_value=7e-16) genomic_reference:SL2.40ch06 gene_region:42512803-42513768 transcript_region:SL2.40ch06:42512803..42513768+ go_terms:GO:0005576 functional_description:"Phytosulfokines 5 (AHRD V1 *-*- PSK5_ORYSJ); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00050120g0002.1 protein AED:0.19 eAED:0.20 QI:0|0.9|0.81|1|1|1|11|0|505; (*SWP) sp|B0S733|REN3A_DANRE (e_value=3e-20) Regulator of nonsense transcripts 3A OS=Danio rerio GN=upf3a PE=2 SV=2;; (*TAIR) AT1G33980.2 (e_value=3e-82) | Symbols: ATUPF3, UPF3 | Smg-4/UPF3 family protein | chr1:12351719-12354401 FORWARD LENGTH=484;; (*ITAG) Solyc01g103420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83786331-83798238 transcript_region:SL2.40ch01:83786331..83798238+ go_terms:GO:0000166 functional_description:"Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3 "; GO:0000166 NbS00015777g0012.1 protein AED:0.19 eAED:0.22 QI:0|1|0.83|1|1|1|6|0|498; (*TAIR) AT5G01590.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr5:224249-226620 FORWARD LENGTH=527;; (*ITAG) Solyc09g013100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5502022-5508000 transcript_region:SL2.40ch09:5502022..5508000+ functional_description:"RNA binding protein (AHRD V1 *-*- Q3LWF1_BIGNA)"; NbS00015777g0013.1 protein AED:0.08 eAED:0.09 QI:13|0.66|0.14|1|0.66|0.28|7|0|1130; (*SWP) sp|P92974|UBE12_ARATH (e_value=0.0) Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1;; (*TAIR) AT5G06460.1 (e_value=0.0) | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme 2 | chr5:1970239-1974382 FORWARD LENGTH=1077;; (*ITAG) Solyc09g018450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14926834-14932901 transcript_region:SL2.40ch09:14926834..14932901+ go_terms:GO:0004842 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 **** Q75VJ8_TOBAC); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0004842 NbS00015777g0014.1 protein AED:0.42 eAED:0.42 QI:53|1|0.4|1|0.75|0.6|5|0|229; (*SWP) sp|A6QPN6|GILT_BOVIN (e_value=4e-28) Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1;; (*TAIR) AT5G01580.1 (e_value=3e-74) | Symbols: OSH1 | gamma interferon responsive lysosomal thiol (GILT) reductase family protein | chr5:222760-223852 REVERSE LENGTH=233;; (*ITAG) Solyc09g018430.2.1 (e_value=2e-86) genomic_reference:SL2.40ch09 gene_region:14871806-14874971 transcript_region:SL2.40ch09:14871806..14874971+ go_terms:GO:0005515,GO:0003824 functional_description:"Gamma-interferon-inducible lysosomal thiol reductase (AHRD V1 ***- B6U3P7_MAIZE); contains Interpro domain(s) IPR004911 Gamma interferon inducible lysosomal thiol reductase GILT "; GO:0005515,GO:0003824 NbS00025815g0005.1 protein AED:0.20 eAED:0.20 QI:105|1|1|1|0.91|0.84|13|134|662; (*SWP) sp|Q9T074|PCKA_ARATH (e_value=0.0) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1;; (*TAIR) AT4G37870.1 (e_value=0.0) | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671;; (*ITAG) Solyc04g076880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising "; GO:0004612,GO:0042802 NbS00017183g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.8|0.66|1|0.6|0.5|6|0|242; (*SWP) sp|Q8H129|PPA3_ARATH (e_value=1e-106) Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1;; (*TAIR) AT1G14700.1 (e_value=1e-107) | Symbols: PAP3, ATPAP3 | purple acid phosphatase 3 | chr1:5058680-5060988 FORWARD LENGTH=366;; (*ITAG) Solyc04g008260.2.1 (e_value=2e-111) genomic_reference:SL2.40ch04 gene_region:1939951-1945165 transcript_region:SL2.40ch04:1939951..1945165- go_terms:GO:0004722 functional_description:"Acid phosphatase (AHRD V1 **** B9XQU4_9BACT); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00017183g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.66|1|0.8|1|6|0|553; (*TAIR) AT1G14710.2 (e_value=2e-72) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:5062168-5064697 REVERSE LENGTH=601;; (*ITAG) Solyc04g008240.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1918028-1924900 transcript_region:SL2.40ch04:1918028..1924900+ functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE)"; NbS00008100g0012.1 protein AED:0.08 eAED:0.08 QI:3606|1|1|1|0.85|0.66|15|236|149; (*ITAG) Solyc08g075890.2.1 (e_value=1e-65) genomic_reference:SL2.40ch08 gene_region:57145771-57149447 transcript_region:SL2.40ch08:57145771..57149447+ go_terms:GO:0004693 functional_description:"Cyclin-dependent kinase F-4 (AHRD V1 **** CDKF4_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00008100g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|356; (*SWP) sp|O23659|Y2372_ARATH (e_value=5e-13) B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1;; (*TAIR) AT2G33720.1 (e_value=4e-14) | Symbols: | AP2/B3-like transcriptional factor family protein | chr2:14263776-14264989 FORWARD LENGTH=326;; (*ITAG) Solyc08g075900.1.1 (e_value=3e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57150765-57151544 transcript_region:SL2.40ch08:57150765..57151544- functional_description:"B3 domain-containing protein At2g33720 (AHRD V1 *-*- Y2372_ARATH)"; NbS00008100g0013.1 protein AED:0.08 eAED:0.13 QI:0|0.33|0|0.71|0.66|0.57|7|0|293; (*SWP) sp|Q17TI5|BRX_ARATH (e_value=2e-108) Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2;; (*TAIR) AT1G31880.1 (e_value=1e-109) | Symbols: NLM9, BRX | DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein | chr1:11447804-11450053 FORWARD LENGTH=344;; (*ITAG) Solyc08g075920.2.1 (e_value=2e-177) genomic_reference:SL2.40ch08 gene_region:57156050-57160619 transcript_region:SL2.40ch08:57156050..57160619- go_terms:GO:0042802,GO:0015250 functional_description:"Protein BREVIS RADIX (AHRD V1 ***- BRX_ARATH); contains Interpro domain(s) IPR013591 Disease resistance/zinc finger/chromosome condensation-like region "; GO:0042802,GO:0015250 NbS00036115g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.33|1|1|3|0|239; (*SWP) sp|Q9M313|ATL68_ARATH (e_value=1e-44) RING-H2 finger protein ATL68 OS=Arabidopsis thaliana GN=ATL68 PE=2 SV=1;; (*TAIR) AT3G61550.1 (e_value=8e-46) | Symbols: | RING/U-box superfamily protein | chr3:22776444-22777082 FORWARD LENGTH=212;; (*ITAG) Solyc01g095180.2.1 (e_value=2e-78) genomic_reference:SL2.40ch01 gene_region:78300506-78301695 transcript_region:SL2.40ch01:78300506..78301695+ go_terms:GO:0008270 functional_description:"RING finger protein 38 (AHRD V1 *-*- RNF38_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00036115g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|243; (*TAIR) AT2G46150.1 (e_value=2e-67) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=1e-119) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00051596g0011.1 protein AED:0.00 eAED:0.00 QI:214|1|1|1|1|1|2|775|99; (*ITAG) Solyc04g074110.2.1 (e_value=1e-15) genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00051596g0012.1 protein AED:0.21 eAED:0.23 QI:0|0.36|0.08|1|0.63|0.5|12|0|741; (*SWP) sp|Q9URY4|YI01_SCHPO (e_value=2e-57) Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=2 SV=1;; (*TAIR) AT4G34880.1 (e_value=6e-129) | Symbols: | Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466;; (*ITAG) Solyc01g111220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89309070-89311733 transcript_region:SL2.40ch01:89309070..89311733+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B2WKK5_PYRTR); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00005722g0001.1 protein AED:0.59 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|165; (*ITAG) Solyc08g044370.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00013045g0005.1 protein AED:0.19 eAED:0.24 QI:7|0.5|0.57|1|0.33|0.57|7|116|383; (*SWP) sp|Q9GPF1|AP3M_DICDI (e_value=3e-86) AP-3 complex subunit mu OS=Dictyostelium discoideum GN=apm3 PE=2 SV=1;; (*TAIR) AT1G56590.1 (e_value=0.0) | Symbols: ZIP4 | Clathrin adaptor complexes medium subunit family protein | chr1:21202250-21204697 REVERSE LENGTH=415;; (*ITAG) Solyc01g100820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82505920-82511827 transcript_region:SL2.40ch01:82505920..82511827- go_terms:GO:0030276 functional_description:"AP-3 complex subunit mu-2 (AHRD V1 ***- B6TBI2_MAIZE); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00004660g0004.1 protein AED:0.01 eAED:0.01 QI:34|1|1|1|0.55|0.7|10|304|391; (*TAIR) AT5G57880.1 (e_value=7e-117) | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle 1 | chr5:23443977-23446439 FORWARD LENGTH=385;; (*ITAG) Solyc07g005790.2.1 (e_value=9e-102) genomic_reference:SL2.40ch07 gene_region:642780-645936 transcript_region:SL2.40ch07:642780..645936- functional_description:"Genomic DNA chromosome 5 P1 clone MTI20 (AHRD V1 ***- Q9FJM6_ARATH)"; NbS00053112g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.66|1|0.8|0.83|6|302|299; (*TAIR) AT3G05010.1 (e_value=3e-132) | Symbols: | Protein of unknown function, transmembrane-40 | chr3:1389603-1391462 FORWARD LENGTH=300;; (*ITAG) Solyc01g098210.2.1 (e_value=6e-177) genomic_reference:SL2.40ch01 gene_region:80558621-80563527 transcript_region:SL2.40ch01:80558621..80563527- functional_description:"Transmembrane protein adipocyte-associated 1 homolog (AHRD V1 **-- TPRA1_DANRE); contains Interpro domain(s) IPR018781 Protein of unknown function, transmembrane-40 "; NbS00039628g0001.1 protein AED:0.09 eAED:0.09 QI:172|0.85|0.86|1|1|1|22|227|1082; (*SWP) sp|Q9SV36|ARK1_ARATH (e_value=0.0) Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2;; (*TAIR) AT3G54870.1 (e_value=0.0) | Symbols: MRH2, ARK1, CAE1 | Armadillo/beta-catenin repeat family protein / kinesin motor family protein | chr3:20330806-20335823 FORWARD LENGTH=941;; (*ITAG) Solyc11g008350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2551602-2567405 transcript_region:SL2.40ch11:2551602..2567405- go_terms:GO:0008017,GO:0003779 functional_description:"Kinesin-like protein (AHRD V1 *-*- D0NDH4_PHYIN); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017,GO:0003779 NbS00005379g0007.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.5|1|0.55|0.3|10|198|467; (*SWP) sp|O23051|KAO1_ARATH (e_value=0.0) Ent-kaurenoic acid oxidase 1 OS=Arabidopsis thaliana GN=KAO1 PE=2 SV=1;; (*TAIR) AT1G05160.1 (e_value=0.0) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc01g080900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72751511-72755773 transcript_region:SL2.40ch01:72751511..72755773+ go_terms:GO:0051777 functional_description:"Cytochrome P450"; GO:0051777 NbS00058848g0003.1 protein AED:0.25 eAED:0.25 QI:24|1|0.5|1|1|1|2|0|284; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=6e-70) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT1G52340.1 (e_value=1e-68) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc12g056710.1.1 (e_value=1e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48159524-48160596 transcript_region:SL2.40ch12:48159524..48160596- go_terms:GO:0010301 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **** ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301 NbS00000900g0003.1 protein AED:0.11 eAED:0.11 QI:90|1|1|1|1|1|2|109|360; (*TAIR) AT1G61260.1 (e_value=6e-64) | Symbols: | Protein of unknown function (DUF761) | chr1:22593756-22594986 REVERSE LENGTH=344;; (*ITAG) Solyc07g063560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63231728-63233789 transcript_region:SL2.40ch07:63231728..63233789+ functional_description:"Cotton fiber expressed protein 1 (AHRD V1 ***- O81373_GOSHI); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00020395g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.66|0.57|7|41|351; (*SWP) sp|Q8T197|DHRS7_DICDI (e_value=7e-35) Dehydrogenase/reductase SDR family protein 7-like OS=Dictyostelium discoideum GN=DDB_G0274201 PE=3 SV=1;; (*TAIR) AT5G50700.1 (e_value=7e-156) | Symbols: HSD1 | hydroxysteroid dehydrogenase 1 | chr5:20623259-20624995 REVERSE LENGTH=349;; (*ITAG) Solyc06g072670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41205612-41207945 transcript_region:SL2.40ch06:41205612..41207945- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- Q08PN0_STIAU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00020395g0005.1 protein AED:0.18 eAED:0.24 QI:0|0|0|1|0|0|4|0|344; (*ITAG) Solyc04g049900.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:43859032-43866883 transcript_region:SL2.40ch04:43859032..43866883+ functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00026554g0010.1 protein AED:0.20 eAED:0.20 QI:34|0.75|0.4|1|1|1|5|0|334 NbS00026554g0011.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|143; (*SWP) sp|P32295|ARG7_VIGRR (e_value=6e-16) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G38860.1 (e_value=7e-38) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18130357-18130674 FORWARD LENGTH=105;; (*ITAG) Solyc01g110570.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:88986574-88987218 transcript_region:SL2.40ch01:88986574..88987218- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbC25635295g0003.1 protein AED:0.00 eAED:0.00 QI:45|1|1|1|1|1|3|0|239; (*SWP) sp|Q9LR65|P2C01_ARATH (e_value=4e-89) Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1;; (*TAIR) AT1G03590.1 (e_value=3e-90) | Symbols: | Protein phosphatase 2C family protein | chr1:894480-896257 REVERSE LENGTH=462;; (*ITAG) Solyc07g054300.2.1 (e_value=3e-120) genomic_reference:SL2.40ch07 gene_region:59978549-59982341 transcript_region:SL2.40ch07:59978549..59982341+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00005009g0002.1 protein AED:0.04 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|278; (*ITAG) Solyc11g065840.1.1 (e_value=1e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48498505-48501558 transcript_region:SL2.40ch11:48498505..48501558- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q70KC5_EUCGU); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00006888g0008.1 protein AED:0.32 eAED:0.65 QI:0|0|0|0.66|0.5|0.33|3|156|67 NbS00006888g0007.1 protein AED:0.26 eAED:0.27 QI:36|0.83|0.86|0.97|0.88|0.93|44|185|1777; (*SWP) sp|Q92621|NU205_HUMAN (e_value=3e-37) Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1 SV=3;; (*TAIR) AT5G51200.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3414) | chr5:20804926-20819408 FORWARD LENGTH=1838;; (*ITAG) Solyc12g006480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:969890-999838 transcript_region:SL2.40ch12:969890..999838- functional_description:"Nup205 protein (Fragment) (AHRD V1 ***- Q6PDG0_MOUSE)"; NbS00006888g0009.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|4|0|114 NbS00006888g0012.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|75; (*ITAG) Solyc03g122220.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64164381-64164724 transcript_region:SL2.40ch03:64164381..64164724- go_terms:GO:0008270 functional_description:"GRF zinc finger containing protein (AHRD V1 *-*- Q2A9I2_BRAOL); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00037171g0001.1 protein AED:0.39 eAED:0.84 QI:0|0|0|1|1|1|3|0|84 NbS00024468g0005.1 protein AED:0.06 eAED:0.06 QI:403|0.83|0.85|1|0.83|0.71|7|199|874; (*SWP) sp|Q93YT1|GLR32_ARATH (e_value=0.0) Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2;; (*TAIR) AT4G35290.1 (e_value=0.0) | Symbols: GLUR2, GLR3.2, ATGLR3.2, ATGLUR2 | glutamate receptor 2 | chr4:16790290-16793461 FORWARD LENGTH=912;; (*ITAG) Solyc04g082610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63830521-63835334 transcript_region:SL2.40ch04:63830521..63835334+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00024468g0002.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|1|1|3|0|285; (*SWP) sp|A1BJF6|KHSE_CHLPD (e_value=8e-24) Homoserine kinase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=2e-97) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=3e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00024468g0003.1 protein AED:0.11 eAED:0.11 QI:252|0.83|0.85|1|0.5|0.42|7|0|675; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc04g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63881553-63887198 transcript_region:SL2.40ch04:63881553..63887198- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 *-*- GTR12_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00016405g0003.1 protein AED:0.06 eAED:0.06 QI:284|1|1|1|1|0.5|2|0|251; (*SWP) sp|Q9SDW0|TGT3A_ARATH (e_value=4e-54) Trihelix transcription factor GT-3a OS=Arabidopsis thaliana GN=GT-3A PE=1 SV=1;; (*TAIR) AT5G01380.1 (e_value=3e-55) | Symbols: | Homeodomain-like superfamily protein | chr5:155784-157451 REVERSE LENGTH=323;; (*ITAG) Solyc09g005560.2.1 (e_value=1e-70) genomic_reference:SL2.40ch09 gene_region:386228-387708 transcript_region:SL2.40ch09:386228..387708- functional_description:"Zinc finger and SCAN domain containing 29 (Predicted) (AHRD V1 *--- A9X1B1_PAPAN); contains Interpro domain(s) IPR017877 MYB-like "; NbS00021581g0001.1 protein AED:0.25 eAED:0.25 QI:172|1|1|1|0.33|0|4|330|213; (*SWP) sp|Q6GPW4|TM205_XENLA (e_value=1e-24) Transmembrane protein 205 OS=Xenopus laevis GN=tmem205 PE=2 SV=1;; (*TAIR) AT3G62580.1 (e_value=7e-118) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr3:23146931-23147735 FORWARD LENGTH=213;; (*ITAG) Solyc01g079590.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:71205332-71212873 transcript_region:SL2.40ch01:71205332..71212873+ functional_description:"Transmembrane protein 205 (AHRD V1 ***- B9EN72_SALSA)"; NbS00021581g0010.1 protein AED:0.05 eAED:0.09 QI:7|0|0|0.66|0.5|0.33|3|0|333; (*SWP) sp|P34091|RL6_MESCR (e_value=9e-95) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1;; (*TAIR) AT1G74050.1 (e_value=4e-89) | Symbols: | Ribosomal protein L6 family protein | chr1:27847256-27848680 REVERSE LENGTH=233;; (*ITAG) Solyc05g054070.2.1 (e_value=6e-106) genomic_reference:SL2.40ch05 gene_region:63196547-63198365 transcript_region:SL2.40ch05:63196547..63198365- go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E "; GO:0003735,GO:0003723 NbS00023104g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.8|0.5|1|0.8|0.66|6|60|563; (*ITAG) Solyc07g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1936301-1939190 transcript_region:SL2.40ch07:1936301..1939190+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023104g0010.1 protein AED:0.19 eAED:0.19 QI:258|1|1|1|0|0.33|3|419|163; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=2e-12) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT2G15580.1 (e_value=1e-24) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196;; (*ITAG) Solyc07g007180.2.1 (e_value=4e-83) genomic_reference:SL2.40ch07 gene_region:1931106-1935135 transcript_region:SL2.40ch07:1931106..1935135+ go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- B6TJA7_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00023104g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.83|0.57|0.85|1|1|7|272|535; (*SWP) sp|Q91XF4|RN167_MOUSE (e_value=3e-14) E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1;; (*TAIR) AT5G45290.1 (e_value=2e-40) | Symbols: | RING/U-box superfamily protein | chr5:18350011-18352092 REVERSE LENGTH=545;; (*ITAG) Solyc07g007200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1939982-1946761 transcript_region:SL2.40ch07:1939982..1946761- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00049576g0003.1 protein AED:0.45 eAED:0.59 QI:0|0.5|0|1|0|0.33|3|0|94; (*TAIR) AT5G66840.1 (e_value=4e-18) | Symbols: | SAP domain-containing protein | chr5:26692922-26695296 REVERSE LENGTH=551;; (*ITAG) Solyc02g090530.2.1 (e_value=3e-32) genomic_reference:SL2.40ch02 gene_region:46639874-46643399 transcript_region:SL2.40ch02:46639874..46643399+ go_terms:GO:0003676 functional_description:"Zinc finger CCCH domain-containing protein 62 (AHRD V1 *--- C3H62_ORYSJ); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00049576g0002.1 protein AED:0.42 eAED:0.52 QI:0|0|0|1|0|0|3|0|78 NbS00033020g0006.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|0|0|2|0|448; (*SWP) sp|Q3MKY2|AAE_RAUSE (e_value=6e-65) Acetylajmalan esterase OS=Rauvolfia serpentina GN=AAE PE=1 SV=1;; (*TAIR) AT1G28640.1 (e_value=2e-61) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10067563-10069109 REVERSE LENGTH=389;; (*ITAG) Solyc12g017460.1.1 (e_value=3e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbC25161161g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|168; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=7e-84) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=5e-85) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc07g047990.1.1 (e_value=3e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56521372-56522845 transcript_region:SL2.40ch07:56521372..56522845+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013355g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|11|278|844; (*SWP) sp|O42832|SPB1_SCHPO (e_value=2e-112) AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2;; (*TAIR) AT4G25730.1 (e_value=0.0) | Symbols: | FtsJ-like methyltransferase family protein | chr4:13102906-13106718 REVERSE LENGTH=821;; (*ITAG) Solyc11g020810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:12195304-12206882 transcript_region:SL2.40ch11:12195304..12206882- go_terms:GO:0031167,GO:0005634,GO:0032259 functional_description:"Ribosomal RNA large subunit methyltransferase J family protein (AHRD V1 *-*- A7APJ4_BABBO); contains Interpro domain(s) IPR015507 Ribosomal RNA methyltransferase J "; GO:0031167,GO:0005634,GO:0032259 NbS00013355g0102.1 protein AED:0.43 eAED:0.45 QI:0|0|0|0.66|0|0|3|0|154 NbS00024354g0003.1 protein AED:0.34 eAED:0.34 QI:136|0.85|1|1|1|1|8|228|255; (*SWP) sp|Q9CPY6|CQ039_MOUSE (e_value=3e-27) Uncharacterized protein C17orf39 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT2G37680.1 (e_value=1e-108) | Symbols: | CONTAINS InterPro DOMAIN/s: Vacuolar import/degradation protein Vid24 (InterPro:IPR018618); Has 318 Blast hits to 317 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 184; Plants - 51; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr2:15803500-15805515 REVERSE LENGTH=215;; (*ITAG) Solyc10g084850.1.1 (e_value=1e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63560256-63564942 transcript_region:SL2.40ch10:63560256..63564942- functional_description:"Vacuolar import and degradation protein 24 (AHRD V1 **-- C5FHJ7_NANOT); contains Interpro domain(s) IPR018618 Vacuolar import and degradation protein Vid24 "; NbS00019351g0005.1 protein AED:0.12 eAED:0.14 QI:240|0.84|0.78|1|1|1|14|0|1037; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=2e-81) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT5G66310.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063;; (*ITAG) Solyc02g084390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42084435-42089727 transcript_region:SL2.40ch02:42084435..42089727- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00048635g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.6|0.33|1|0.6|0.5|6|0|596; (*TAIR) AT1G23790.1 (e_value=1e-179) | Symbols: | Plant protein of unknown function (DUF936) | chr1:8410099-8411917 FORWARD LENGTH=518;; (*ITAG) Solyc05g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:415971-418540 transcript_region:SL2.40ch05:415971..418540+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- C1PIB6_ARATH); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00022147g0012.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.71|1|1|1|7|448|362; (*SWP) sp|Q7ZUC7|PGES2_DANRE (e_value=1e-69) Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1;; (*TAIR) AT5G42150.1 (e_value=1e-142) | Symbols: | Glutathione S-transferase family protein | chr5:16846247-16847909 FORWARD LENGTH=315;; (*ITAG) Solyc04g081740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63261363-63265459 transcript_region:SL2.40ch04:63261363..63265459+ go_terms:GO:0016563,GO:0003677 functional_description:"Prostaglandin E synthase 2-like (AHRD V1 ***- B0S751_DANRE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0016563,GO:0003677 NbS00022147g0015.1 protein AED:0.34 eAED:0.35 QI:0|0.28|0.25|1|0.71|0.75|8|0|596; (*SWP) sp|Q8GW78|CLP41_ARATH (e_value=1e-41) Clp protease-related protein At4g12060, chloroplastic OS=Arabidopsis thaliana GN=At4g12060 PE=1 SV=1;; (*TAIR) AT1G20110.1 (e_value=1e-61) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc04g081750.2.1 (e_value=8e-89) genomic_reference:SL2.40ch04 gene_region:63266616-63275332 transcript_region:SL2.40ch04:63266616..63275332+ go_terms:GO:0005515,GO:0035091 functional_description:"FYVE, RhoGEF and PH domain-containing protein 6 (AHRD V1 *--- FGD6_HUMAN); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00050218g0005.1 protein AED:0.11 eAED:0.17 QI:157|0.44|0.6|0.9|0.22|0.5|10|467|732; (*TAIR) AT1G07970.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693;; (*ITAG) Solyc11g069170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50878904-50883953 transcript_region:SL2.40ch11:50878904..50883953- functional_description:"Transmembrane protein 209 (AHRD V1 *-*- TM209_MOUSE); contains Interpro domain(s) IPR019176 Cytochrome B561-related, N-terminal "; NbS00023552g0005.1 protein AED:0.24 eAED:0.24 QI:257|1|0.8|1|0|0|5|0|125; (*TAIR) AT4G26060.1 (e_value=1e-52) | Symbols: | Ribosomal protein L18ae family | chr4:13214972-13215955 REVERSE LENGTH=133;; (*ITAG) Solyc07g041010.2.1 (e_value=3e-76) genomic_reference:SL2.40ch07 gene_region:48851789-48854684 transcript_region:SL2.40ch07:48851789..48854684+ functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 ***- Q9LTR7_ARATH)"; NbS00023552g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.83|1|0.6|0.83|6|231|292; (*TAIR) AT2G19385.1 (e_value=4e-76) | Symbols: | zinc ion binding | chr2:8387149-8388581 FORWARD LENGTH=275;; (*ITAG) Solyc07g041020.2.1 (e_value=2e-152) genomic_reference:SL2.40ch07 gene_region:48856332-48860674 transcript_region:SL2.40ch07:48856332..48860674- go_terms:GO:0008270 functional_description:"Cell growth-regulating nucleolar protein (AHRD V1 *--- C1BWD8_ESOLU); contains Interpro domain(s) IPR014898 Zinc finger, C2H2, LYAR-type "; GO:0008270 NbS00002172g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.92|0.73|1|0.92|0.86|15|0|2888; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=0.0) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc04g076620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00002172g0014.1 protein AED:0.39 eAED:0.40 QI:9|1|0.5|1|0.66|1|4|0|871; (*SWP) sp|Q8H0T4|UPL2_ARATH (e_value=3e-168) E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3;; (*TAIR) AT1G70320.1 (e_value=2e-169) | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:26488745-26501281 REVERSE LENGTH=3658;; (*ITAG) Solyc04g076620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00021642g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|364; (*SWP) sp|P29136|MEP1_SOYBN (e_value=1e-85) Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2;; (*TAIR) AT1G24140.1 (e_value=9e-146) | Symbols: | Matrixin family protein | chr1:8536131-8537285 REVERSE LENGTH=384;; (*ITAG) Solyc04g005050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:47516-48619 transcript_region:SL2.40ch04:47516..48619+ go_terms:GO:0004222 functional_description:"Matrix metalloproteinase (AHRD V1 **-- B7TVN4_PINTA); contains Interpro domain(s) IPR001818 Peptidase M10A and M12B, matrixin and adamalysin "; GO:0004222 NbS00021642g0011.1 protein AED:0.28 eAED:0.29 QI:181|1|0.83|1|0.8|0.66|6|0|250; (*SWP) sp|Q9ZWS9|ARR3_ARATH (e_value=4e-73) Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=2 SV=1;; (*TAIR) AT1G59940.1 (e_value=3e-74) | Symbols: ARR3 | response regulator 3 | chr1:22065894-22066895 REVERSE LENGTH=231;; (*ITAG) Solyc05g006420.2.1 (e_value=8e-102) genomic_reference:SL2.40ch05 gene_region:1055803-1059192 transcript_region:SL2.40ch05:1055803..1059192+ go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 *-** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00012580g0015.1 protein AED:0.15 eAED:0.17 QI:0|0.66|0.5|1|0.66|0.6|10|0|1290; (*SWP) sp|O60094|DPO5_SCHPO (e_value=7e-17) DNA polymerase V OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol5 PE=1 SV=2;; (*TAIR) AT5G64420.1 (e_value=0.0) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00012580g0010.1 protein AED:0.19 eAED:0.19 QI:172|0.68|0.52|1|0.87|0.76|17|0|1016; (*SWP) sp|Q2KHU8|IF2G_BOVIN (e_value=4e-113) Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus GN=EIF2S3 PE=2 SV=1;; (*TAIR) AT4G14510.1 (e_value=0.0) | Symbols: ATCFM3B, CFM3B | CRM family member 3B | chr4:8337390-8341057 REVERSE LENGTH=907;; (*ITAG) Solyc09g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64410108-64416669 transcript_region:SL2.40ch09:64410108..64416669+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00012580g0003.1 protein AED:0.58 eAED:0.70 QI:0|0|0|1|1|1|2|0|225; (*SWP) sp|Q9M8J9|BPM2_ARATH (e_value=3e-25) BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana GN=BPM2 PE=1 SV=1;; (*TAIR) AT3G06190.2 (e_value=3e-27) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=295;; (*ITAG) Solyc01g080250.2.1 (e_value=5e-44) genomic_reference:SL2.40ch01 gene_region:71983066-71992106 transcript_region:SL2.40ch01:71983066..71992106- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00012580g0014.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|157; (*TAIR) AT1G12870.1 (e_value=2e-11) | Symbols: | F-box and associated interaction domains-containing protein | chr1:4387129-4389110 REVERSE LENGTH=416;; (*ITAG) Solyc01g067030.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:67757131-67758593 transcript_region:SL2.40ch01:67757131..67758593- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00050167g0008.1 protein AED:0.05 eAED:0.05 QI:154|1|1|1|1|1|8|205|515; (*SWP) sp|Q6PQQ3|AIL5_ARATH (e_value=3e-128) AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2;; (*TAIR) AT5G57390.1 (e_value=3e-129) | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5 | chr5:23253459-23256437 REVERSE LENGTH=558;; (*ITAG) Solyc07g018290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:10023972-10028265 transcript_region:SL2.40ch07:10023972..10028265- go_terms:GO:0043565 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0043565 NbS00050167g0001.1 protein AED:0.26 eAED:0.26 QI:92|0.77|1|1|0.77|0.7|10|396|223; (*SWP) sp|Q92373|RFA2_SCHPO (e_value=2e-13) Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb2 PE=1 SV=1;; (*TAIR) AT2G24490.2 (e_value=4e-43) | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=279;; (*ITAG) Solyc07g018300.2.1 (e_value=6e-127) genomic_reference:SL2.40ch07 gene_region:10037245-10042545 transcript_region:SL2.40ch07:10037245..10042545- go_terms:GO:0003697,GO:0047485 functional_description:"Single-stranded DNA binding protein p30 subunit (AHRD V1 **** C5JUU5_AJEDS); contains Interpro domain(s) IPR014646 Replication protein A, subunit RPA32 "; GO:0003697,GO:0047485 NbS00031782g0006.1 protein AED:0.00 eAED:0.00 QI:125|1|0.5|1|1|1|2|0|425; (*TAIR) AT1G70230.1 (e_value=2e-153) | Symbols: TBL27 | TRICHOME BIREFRINGENCE-LIKE 27 | chr1:26450389-26451724 FORWARD LENGTH=416;; (*ITAG) Solyc01g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2199131-2201264 transcript_region:SL2.40ch01:2199131..2201264+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q67V91_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00031782g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|423; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=8e-23) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=6e-24) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc01g008040.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2196519-2197816 transcript_region:SL2.40ch01:2196519..2197816- functional_description:"S-locus F-box-like protein a (Fragment) (AHRD V1 ***- B0F0G3_PETIN); contains Interpro domain(s) IPR006527 F-box associated "; NbS00004741g0006.1 protein AED:0.25 eAED:0.25 QI:619|1|0.66|1|0|0.33|3|0|40 NbS00004741g0007.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|134 NbS00013605g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|216; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=4e-36) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=1e-37) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc04g015060.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5258000-5260765 transcript_region:SL2.40ch04:5258000..5260765+ go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-*- B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00041381g0009.1 protein AED:0.26 eAED:0.26 QI:261|1|1|1|1|1|8|155|407; (*SWP) sp|P47013|DS1P1_YEAST (e_value=1e-23) Dihydrosphingosine 1-phosphate phosphatase LCB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCB3 PE=1 SV=1;; (*TAIR) AT3G58490.1 (e_value=0.0) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr3:21633065-21635057 FORWARD LENGTH=416;; (*ITAG) Solyc03g051970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19432177-19436424 transcript_region:SL2.40ch03:19432177..19436424- go_terms:GO:0016020 functional_description:"Sphingosine-1-phosphate phosphatase (AHRD V1 *-*- A8P551_COPC7); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020 NbS00041381g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.66|1|1|1|9|25|596; (*SWP) sp|Q08891|FACR2_ARATH (e_value=0.0) Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2;; (*TAIR) AT3G11980.1 (e_value=0.0) | Symbols: MS2, FAR2 | Jojoba acyl CoA reductase-related male sterility protein | chr3:3814484-3816927 FORWARD LENGTH=616;; (*ITAG) Solyc03g051960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:19429392-19432048 transcript_region:SL2.40ch03:19429392..19432048+ go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **-* Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00041381g0003.1 protein AED:0.36 eAED:0.36 QI:537|0.85|0.75|1|0.57|0.62|8|0|138; (*SWP) sp|Q9FG08|ATXR4_ARATH (e_value=4e-40) Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana GN=ATXR4 PE=2 SV=2;; (*TAIR) AT5G06620.1 (e_value=3e-41) | Symbols: ATXR4, SDG38 | SET domain protein 38 | chr5:2033780-2036143 FORWARD LENGTH=325;; (*ITAG) Solyc03g051950.2.1 (e_value=5e-51) genomic_reference:SL2.40ch03 gene_region:19424306-19427739 transcript_region:SL2.40ch03:19424306..19427739+ functional_description:"SET and MYND domain-containing 3 (AHRD V1 *-*- C3RZA2_PIG); contains Interpro domain(s) IPR001214 SET "; NbS00009655g0001.1 protein AED:0.12 eAED:0.19 QI:0|0|0|0.33|1|1|3|0|233; (*TAIR) AT1G68360.1 (e_value=1e-16) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:25621678-25622412 REVERSE LENGTH=244;; (*ITAG) Solyc05g006310.1.1 (e_value=2e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:960800-961552 transcript_region:SL2.40ch05:960800..961552- go_terms:GO:0003700 functional_description:"Zinc finger protein 6 (AHRD V1 *-*- B6T066_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00009655g0002.1 protein AED:0.65 eAED:0.65 QI:53|0|0.5|0.5|0|0|2|0|18 NbS00024016g0010.1 protein AED:0.07 eAED:0.07 QI:60|0.89|0.8|1|0.89|0.9|20|0|1462; (*SWP) sp|P30182|TOP2_ARATH (e_value=0.0) DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2;; (*TAIR) AT3G23890.2 (e_value=0.0) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1438;; (*ITAG) Solyc01g087500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74205900-74212696 transcript_region:SL2.40ch01:74205900..74212696- go_terms:GO:0003918 functional_description:"DNA topoisomerase 2 (AHRD V1 **** Q8GSC4_TOBAC); contains Interpro domain(s) IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal "; GO:0003918 NbS00024016g0009.1 protein AED:0.43 eAED:0.43 QI:262|1|0.66|1|0.5|0.33|3|0|1186; (*SWP) sp|Q84TI3|OBE4_ARATH (e_value=0.0) Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2;; (*TAIR) AT3G63500.2 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1423) | chr3:23446331-23449991 REVERSE LENGTH=1162;; (*ITAG) Solyc01g087490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74201963-74205444 transcript_region:SL2.40ch01:74201963..74205444+ functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; NbS00024016g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|164; (*SWP) sp|P80680|FTRV_MAIZE (e_value=2e-25) Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1;; (*TAIR) AT5G08410.1 (e_value=1e-33) | Symbols: FTRA2 | ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 | chr5:2709974-2710528 REVERSE LENGTH=184;; (*ITAG) Solyc01g087520.2.1 (e_value=7e-77) genomic_reference:SL2.40ch01 gene_region:74221192-74222066 transcript_region:SL2.40ch01:74221192..74222066+ go_terms:GO:0009536 functional_description:"Ferredoxin-thioredoxin reductase variable chain (AHRD V1 *-*- B6UCW8_MAIZE); contains Interpro domain(s) IPR004207 Ferredoxin thioredoxin reductase, alpha chain "; GO:0009536 NbS00013049g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|112 NbS00013049g0011.1 protein AED:0.42 eAED:0.47 QI:0|0.25|0|1|1|1|5|0|253; (*SWP) sp|Q96SB4|SRPK1_HUMAN (e_value=3e-31) SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2;; (*TAIR) AT3G53030.1 (e_value=4e-57) | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529;; (*ITAG) Solyc09g008790.2.1 (e_value=3e-72) genomic_reference:SL2.40ch09 gene_region:2214074-2219739 transcript_region:SL2.40ch09:2214074..2219739- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U1C3_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00013049g0013.1 protein AED:0.18 eAED:0.18 QI:173|0.77|0.8|1|1|1|10|1023|386; (*TAIR) AT2G36630.1 (e_value=7e-149) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:15352767-15355050 REVERSE LENGTH=459;; (*ITAG) Solyc09g008780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2206511-2210995 transcript_region:SL2.40ch09:2206511..2210995+ go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 *-*- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00013049g0017.1 protein AED:0.22 eAED:0.22 QI:79|0.75|0.8|1|0.75|0.8|5|306|155; (*SWP) sp|O65743|RL24_CICAR (e_value=3e-70) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT2G36620.1 (e_value=3e-69) | Symbols: RPL24A | ribosomal protein L24 | chr2:15350548-15351819 REVERSE LENGTH=164;; (*ITAG) Solyc10g083740.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62828065-62829671 transcript_region:SL2.40ch10:62828065..62829671- go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00000980g0016.1 protein AED:0.01 eAED:0.01 QI:144|1|1|1|0.25|0.6|5|231|431; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-87) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-88) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g079810.1.1 (e_value=1e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61715006-61716433 transcript_region:SL2.40ch04:61715006..61716433- go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 13 (AHRD V1 ***- FBL13_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00000980g0014.1 protein AED:0.12 eAED:0.15 QI:311|0.5|0.28|1|0.66|0.57|7|0|402; (*SWP) sp|Q949V6|ARI1_ARATH (e_value=5e-59) Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1;; (*TAIR) AT4G34370.1 (e_value=4e-60) | Symbols: ATARI1, ARI1 | RING/U-box superfamily protein | chr4:16434547-16437037 FORWARD LENGTH=597;; (*ITAG) Solyc04g079780.2.1 (e_value=2e-106) genomic_reference:SL2.40ch04 gene_region:61707011-61709902 transcript_region:SL2.40ch04:61707011..61709902- go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00000980g0006.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|210; (*SWP) sp|P82278|RR9_SPIOL (e_value=2e-83) 30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1;; (*TAIR) AT1G74970.1 (e_value=2e-83) | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1:28157761-28159202 REVERSE LENGTH=208;; (*ITAG) Solyc04g079790.2.1 (e_value=6e-113) genomic_reference:SL2.40ch04 gene_region:61710390-61712995 transcript_region:SL2.40ch04:61710390..61712995- go_terms:GO:0005840 functional_description:"30S ribosomal protein S9 (AHRD V1 *-*- B6SZ34_MAIZE); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0005840 NbS00000980g0021.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0.5|0.33|3|0|221; (*SWP) sp|Q8L4Y2|LPAT4_ARATH (e_value=9e-79) Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1;; (*TAIR) AT1G75020.2 (e_value=7e-80) | Symbols: LPAT4 | lysophosphatidyl acyltransferase 4 | chr1:28171779-28173357 FORWARD LENGTH=378;; (*ITAG) Solyc04g079880.2.1 (e_value=7e-106) genomic_reference:SL2.40ch04 gene_region:61792016-61794085 transcript_region:SL2.40ch04:61792016..61794085+ go_terms:GO:0005515,GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** B2LWM4_RICCO); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0005515,GO:0003841 NbS00009515g0001.1 protein AED:0.23 eAED:0.23 QI:169|1|0.83|1|0.8|0.66|6|1105|335; (*SWP) sp|Q9LT23|BH121_ARATH (e_value=7e-85) Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1;; (*TAIR) AT3G19860.2 (e_value=5e-86) | Symbols: bHLH121 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:6903842-6905863 FORWARD LENGTH=337;; (*ITAG) Solyc01g111130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89262003-89265946 transcript_region:SL2.40ch01:89262003..89265946- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00056591g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.8|1|0.75|0.6|5|182|482; (*TAIR) AT5G01260.2 (e_value=3e-48) | Symbols: | Carbohydrate-binding-like fold | chr5:105367-107045 FORWARD LENGTH=385;; (*ITAG) Solyc09g014400.2.1 (e_value=2e-179) genomic_reference:SL2.40ch09 gene_region:6028037-6031223 transcript_region:SL2.40ch09:6028037..6031223+ go_terms:GO:0030246,GO:0005975 functional_description:"Alpha-amylase (AHRD V1 *--- B9LEH8_CHLSY); contains Interpro domain(s) IPR002044 Glycoside hydrolase, carbohydrate-binding "; GO:0030246,GO:0005975 NbS00056591g0011.1 protein AED:0.18 eAED:0.18 QI:200|0.92|0.86|1|0.85|0.8|15|0|805; (*SWP) sp|Q5YDB5|CPL2_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3;; (*TAIR) AT5G01270.1 (e_value=0.0) | Symbols: CPL2, ATCPL2 | carboxyl-terminal domain (ctd) phosphatase-like 2 | chr5:108163-112143 REVERSE LENGTH=770;; (*ITAG) Solyc09g014440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6049484-6059985 transcript_region:SL2.40ch09:6049484..6059985- go_terms:GO:0004647,GO:0019204 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 2 (AHRD V1 **** CPL2_ARATH); contains Interpro domain(s) IPR004274 NLI interacting factor "; GO:0004647,GO:0019204 NbS00056591g0010.1 protein AED:0.63 eAED:0.65 QI:0|0.33|0.25|1|0|0.5|4|0|77 NbS00026822g0012.1 protein AED:0.14 eAED:0.15 QI:0|0.66|0.84|1|0.58|0.61|13|408|319; (*TAIR) AT4G12840.2 (e_value=1e-108) | Symbols: | Protein of unknown function (DUF707) | chr4:7533621-7536263 REVERSE LENGTH=395;; (*ITAG) Solyc11g008930.1.1 (e_value=1e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3089425-3092367 transcript_region:SL2.40ch11:3089425..3092367- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00026822g0010.1 protein AED:0.20 eAED:0.29 QI:0|0|0.25|1|1|1|4|1163|147; (*TAIR) AT1G65295.1 (e_value=3e-40) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24251567-24252054 FORWARD LENGTH=115;; (*ITAG) Solyc11g008910.1.1 (e_value=9e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3082215-3083106 transcript_region:SL2.40ch11:3082215..3083106+ functional_description:"Cysteine-rich peptide (AHRD V1 ***- D7NXT9_WHEAT)"; NbS00026822g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.87|0.77|1|0.5|0.66|9|300|462; (*SWP) sp|Q9SWF9|ZFNL_PEA (e_value=1e-174) Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G02830.1 (e_value=2e-152) | Symbols: ZFN1 | zinc finger protein 1 | chr3:614075-615916 FORWARD LENGTH=397;; (*ITAG) Solyc11g008900.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3068520-3076321 transcript_region:SL2.40ch11:3068520..3076321+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00007607g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|293|212; (*TAIR) AT4G39670.1 (e_value=3e-95) | Symbols: | Glycolipid transfer protein (GLTP) family protein | chr4:18410172-18410861 FORWARD LENGTH=229;; (*ITAG) Solyc12g033130.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:22867958-22869544 transcript_region:SL2.40ch12:22867958..22869544- go_terms:GO:0005737 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 ***- GLTD1_MOUSE); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0005737 NbS00009367g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|272; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=9e-164) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G63000.1 (e_value=0.0) | Symbols: NRS/ER, UER1 | nucleotide-rhamnose synthase/epimerase-reductase | chr1:23342510-23343859 FORWARD LENGTH=301;; (*ITAG) Solyc08g080140.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60644754-60646888 transcript_region:SL2.40ch08:60644754..60646888+ go_terms:GO:0044237,GO:0008152 functional_description:"dTDP-4-dehydrorhamnose reductase (AHRD V1 **-- B6STR1_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00009367g0006.1 protein AED:0.23 eAED:0.25 QI:0|0|0|1|0|0|2|0|257; (*ITAG) Solyc08g080150.1.1 (e_value=2e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60651002-60652114 transcript_region:SL2.40ch08:60651002..60652114+ go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00034459g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|313; (*SWP) sp|Q93WC9|IPT3_ARATH (e_value=2e-109) Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1;; (*TAIR) AT3G63110.1 (e_value=2e-110) | Symbols: ATIPT3, IPT3 | isopentenyltransferase 3 | chr3:23318437-23319447 REVERSE LENGTH=336;; (*ITAG) Solyc09g064910.1.1 (e_value=2e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:57998513-57999457 transcript_region:SL2.40ch09:57998513..57999457- go_terms:GO:0016765 functional_description:"tRNA dimethylallyltransferase (AHRD V1 *-*- D7WPA4_9BACI); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0016765 NbS00005790g0009.1 protein AED:0.01 eAED:0.01 QI:144|1|1|1|0.66|0.71|7|761|215; (*SWP) sp|Q84J78|SSBP_ARATH (e_value=5e-95) Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana GN=At4g11060 PE=2 SV=1;; (*TAIR) AT4G11060.1 (e_value=4e-96) | Symbols: MTSSB | mitochondrially targeted single-stranded DNA binding protein | chr4:6754820-6756230 REVERSE LENGTH=201;; (*ITAG) Solyc01g100080.2.1 (e_value=2e-135) genomic_reference:SL2.40ch01 gene_region:81927750-81931586 transcript_region:SL2.40ch01:81927750..81931586+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding (AHRD V1 ***- Q2HW28_MEDTR); contains Interpro domain(s) IPR000424 Primosome PriB/single-strand DNA-binding "; GO:0003697 NbS00005790g0006.1 protein AED:0.12 eAED:0.12 QI:96|1|1|1|0.75|1|5|1059|379; (*SWP) sp|Q5RDD2|PR38A_PONAB (e_value=1e-86) Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1;; (*TAIR) AT2G40650.1 (e_value=3e-113) | Symbols: | PRP38 family protein | chr2:16963588-16965596 REVERSE LENGTH=355;; (*ITAG) Solyc01g100060.2.1 (e_value=4e-137) genomic_reference:SL2.40ch01 gene_region:81921690-81925571 transcript_region:SL2.40ch01:81921690..81925571+ go_terms:GO:0005488 functional_description:"Pre-mRNA-splicing factor 38A (AHRD V1 *-*- B5X2T8_SALSA); contains Interpro domain(s) IPR005037 PRP38 "; GO:0005488 NbS00005790g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|319; (*ITAG) Solyc01g100070.2.1 (e_value=4e-96) genomic_reference:SL2.40ch01 gene_region:81925800-81926888 transcript_region:SL2.40ch01:81925800..81926888- functional_description:"Unknown Protein (AHRD V1)"; NbS00001706g0008.1 protein AED:0.19 eAED:0.19 QI:536|0.86|0.87|0.93|0.6|0.62|16|1612|376; (*SWP) sp|Q39247|2ABB_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1;; (*TAIR) AT1G17720.2 (e_value=0.0) | Symbols: ATB BETA | Protein phosphatase 2A, regulatory subunit PR55 | chr1:6093949-6098065 REVERSE LENGTH=500;; (*ITAG) Solyc06g062530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35834066-35845751 transcript_region:SL2.40ch06:35834066..35845751- go_terms:GO:0000159 functional_description:"Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (AHRD V1 ***- 2ABB_ARATH); contains Interpro domain(s) IPR000009 Protein phosphatase 2A, regulatory subunit PR55 "; GO:0000159 NbS00001706g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.66|1|0|0|3|346|156; (*SWP) sp|Q5TKD8|TRL2_ORYSJ (e_value=2e-38) Thioredoxin-like 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0200100 PE=2 SV=1;; (*TAIR) AT4G29670.1 (e_value=1e-38) | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin 2 | chr4:14535772-14537108 REVERSE LENGTH=235;; (*ITAG) Solyc03g121480.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:63624799-63627641 transcript_region:SL2.40ch03:63624799..63627641- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7MCJ1_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00001706g0012.1 protein AED:0.20 eAED:0.20 QI:78|0.66|0.75|1|0.66|0.5|4|0|253; (*SWP) sp|Q9FZ62|PPSP2_ARATH (e_value=2e-112) Inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=At1g17710 PE=2 SV=1;; (*TAIR) AT1G17710.1 (e_value=2e-113) | Symbols: | Pyridoxal phosphate phosphatase-related protein | chr1:6090763-6091975 REVERSE LENGTH=279;; (*ITAG) Solyc06g062550.2.1 (e_value=1e-163) genomic_reference:SL2.40ch06 gene_region:35860000-35861411 transcript_region:SL2.40ch06:35860000..35861411+ go_terms:GO:0003824 functional_description:"Phosphatase (AHRD V1 ***- D2V497_NAEGR); contains Interpro domain(s) IPR016965 Pyridoxal phosphate phosphatase, PHOSPHO2 "; GO:0003824 NbS00001706g0103.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|221 NbS00029001g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.88|0.88|0.94|0.88|0.83|18|305|930; (*SWP) sp|P93736|SYV_ARATH (e_value=0.0) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=0.0) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00008340g0006.1 protein AED:0.10 eAED:0.10 QI:81|0.5|0.33|1|0.5|0.66|3|36|247; (*SWP) sp|Q9FLI0|BH120_ARATH (e_value=1e-36) Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2;; (*TAIR) AT5G51790.1 (e_value=8e-38) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21039762-21040594 FORWARD LENGTH=204;; (*ITAG) Solyc03g006910.2.1 (e_value=3e-91) genomic_reference:SL2.40ch03 gene_region:1472793-1474660 transcript_region:SL2.40ch03:1472793..1474660- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 **** Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00017301g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|405; (*SWP) sp|Q9XF97|RL4_PRUAR (e_value=0.0) 60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1;; (*TAIR) AT3G09630.1 (e_value=0.0) | Symbols: | Ribosomal protein L4/L1 family | chr3:2953813-2955444 FORWARD LENGTH=406;; (*ITAG) Solyc10g086010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64326308-64329401 transcript_region:SL2.40ch10:64326308..64329401+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L4/L1 (AHRD V1 ***- D7L8A9_ARALY); contains Interpro domain(s) IPR002136 Ribosomal protein L4/L1e "; GO:0005840 NbS00017301g0011.1 protein AED:0.10 eAED:0.18 QI:0|0|0|1|0.2|0.16|6|0|587; (*SWP) sp|Q9WTZ2|MBTP1_MOUSE (e_value=9e-132) Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=0.0) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00022664g0109.1 protein AED:0.05 eAED:0.05 QI:265|1|1|1|1|1|6|383|349 NbS00059710g0004.1 protein AED:0.23 eAED:0.23 QI:127|0.66|0.75|1|0.33|0.25|4|313|202; (*SWP) sp|O49997|1433E_TOBAC (e_value=2e-122) 14-3-3-like protein E OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G02520.1 (e_value=3e-115) | Symbols: GRF7, GF14 NU | general regulatory factor 7 | chr3:526800-527915 REVERSE LENGTH=265;; (*ITAG) Solyc02g063070.2.1 (e_value=3e-124) genomic_reference:SL2.40ch02 gene_region:29692418-29699297 transcript_region:SL2.40ch02:29692418..29699297- go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-1 (AHRD V1 **-- 143B1_DANRE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00051550g0004.1 protein AED:0.14 eAED:0.21 QI:0|0.1|0|0.90|0.6|0.45|11|0|418; (*SWP) sp|F4K0E8|ISPG_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1;; (*TAIR) AT5G60600.1 (e_value=0.0) | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr5:24359447-24363274 FORWARD LENGTH=741;; (*ITAG) Solyc11g069380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51063324-51069419 transcript_region:SL2.40ch11:51063324..51069419+ go_terms:GO:0044237,GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (AHRD V1 ***- A9ZN14_HEVBR); contains Interpro domain(s) IPR017178 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical "; GO:0044237,GO:0055114 NbS00025078g0002.1 protein AED:0.02 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|111; (*ITAG) Solyc10g081690.1.1 (e_value=4e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62030018-62031028 transcript_region:SL2.40ch10:62030018..62031028- functional_description:"Unknown Protein (AHRD V1)"; NbS00011450g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.42|0.71|0.33|0.57|7|0|247; (*SWP) sp|Q94F87|CMT2_ARATH (e_value=1e-35) DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana GN=CMT2 PE=2 SV=3;; (*TAIR) AT4G19020.1 (e_value=1e-36) | Symbols: CMT2 | chromomethylase 2 | chr4:10414526-10420936 FORWARD LENGTH=1295;; (*ITAG) Solyc08g005400.2.1 (e_value=3e-88) genomic_reference:SL2.40ch08 gene_region:292641-304684 transcript_region:SL2.40ch08:292641..304684+ go_terms:GO:0008017,GO:0045545 functional_description:"Cytosine-specific methyltransferase (AHRD V1 ***- B9S1U5_RICCO); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0008017,GO:0045545 NbS00047918g0007.1 protein AED:0.31 eAED:0.33 QI:20|0.5|0.4|1|0.75|0.6|5|0|266; (*TAIR) AT5G25050.1 (e_value=3e-56) | Symbols: | Major facilitator superfamily protein | chr5:8632022-8633828 FORWARD LENGTH=499;; (*ITAG) Solyc06g068560.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:38881870-38886874 transcript_region:SL2.40ch06:38881870..38886874- go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B5W6N2_SPIMA); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00047918g0002.1 protein AED:0.20 eAED:0.20 QI:164|1|0.5|1|0|0|2|0|481; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=3e-68) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT1G79720.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:29997259-29998951 REVERSE LENGTH=484;; (*ITAG) Solyc03g117690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60816760-60818569 transcript_region:SL2.40ch03:60816760..60818569+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA51_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00000754g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|253; (*SWP) sp|Q5EAF6|FB336_ARATH (e_value=5e-31) Probable F-box protein At5g04010 OS=Arabidopsis thaliana GN=NSFBx PE=2 SV=1;; (*TAIR) AT5G04010.1 (e_value=4e-32) | Symbols: | F-box family protein | chr5:1080205-1081068 REVERSE LENGTH=287;; (*ITAG) Solyc04g017670.2.1 (e_value=9e-138) genomic_reference:SL2.40ch04 gene_region:7750281-7751611 transcript_region:SL2.40ch04:7750281..7751611+ functional_description:"F-box family protein (AHRD V1 ***- B9H9G5_POPTR)"; NbS00011711g0017.1 protein AED:0.04 eAED:0.04 QI:196|0.75|1|1|0.5|0.4|5|0|135; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=2e-54) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1;; (*TAIR) AT2G05840.1 (e_value=7e-52) | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234226-2236053 FORWARD LENGTH=246;; (*ITAG) Solyc12g009140.1.1 (e_value=4e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2453127-2457231 transcript_region:SL2.40ch12:2453127..2457231- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- D2D307_GOSHI); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00011711g0015.1 protein AED:0.04 eAED:0.04 QI:134|1|1|1|1|1|6|846|362; (*SWP) sp|Q7TP48|APMAP_RAT (e_value=5e-40) Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2;; (*TAIR) AT3G51430.2 (e_value=5e-52) | Symbols: YLS2 | Calcium-dependent phosphotriesterase superfamily protein | chr3:19086548-19087909 FORWARD LENGTH=369;; (*ITAG) Solyc05g025810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:36887239-36890935 transcript_region:SL2.40ch05:36887239..36890935- go_terms:GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 **-- Q2SQU4_HAHCH); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00011711g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.8|1|0.5|0.6|5|235|427; (*SWP) sp|Q9CAH1|Y1725_ARATH (e_value=3e-142) Putative receptor-like protein kinase At1g72540 OS=Arabidopsis thaliana GN=At1g72540 PE=2 SV=1;; (*TAIR) AT2G05940.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:2287514-2289270 REVERSE LENGTH=462;; (*ITAG) Solyc05g025820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:36956235-36958165 transcript_region:SL2.40ch05:36956235..36958165- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00043162g0010.1 protein AED:0.04 eAED:0.04 QI:58|0.66|1|1|1|1|4|304|261; (*SWP) sp|Q8L649|BB_ARATH (e_value=1e-13) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT1G17970.1 (e_value=7e-34) | Symbols: | RING/U-box superfamily protein | chr1:6185032-6187202 FORWARD LENGTH=368;; (*ITAG) Solyc05g008840.1.1 (e_value=3e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3068850-3071104 transcript_region:SL2.40ch05:3068850..3071104- functional_description:"Zinc finger protein 2 (AHRD V1 *-*- Q00M82_SOYBN)"; NbS00043162g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|4|157; (*SWP) sp|Q8RYC6|IAA32_ARATH (e_value=2e-37) Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2;; (*TAIR) AT2G01200.2 (e_value=2e-38) | Symbols: IAA32 | indole-3-acetic acid inducible 32 | chr2:118385-119219 FORWARD LENGTH=191;; (*ITAG) Solyc05g008850.2.1 (e_value=5e-86) genomic_reference:SL2.40ch05 gene_region:3078181-3080323 transcript_region:SL2.40ch05:3078181..3080323+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00060471g0005.1 protein AED:0.10 eAED:0.13 QI:0|0.25|0.2|1|0.25|0.6|5|0|318; (*SWP) sp|Q503V9|ENDUB_DANRE (e_value=1e-34) Poly(U)-specific endoribonuclease-B OS=Danio rerio GN=endoub PE=2 SV=1;; (*TAIR) AT4G17100.1 (e_value=2e-108) | Symbols: | CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998); Has 943 Blast hits to 770 proteins in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472; Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes - 257 (source: NCBI BLink). | chr4:9610164-9612513 REVERSE LENGTH=434;; (*ITAG) Solyc08g077510.2.1 (e_value=5e-175) genomic_reference:SL2.40ch08 gene_region:58665382-58670129 transcript_region:SL2.40ch08:58665382..58670129+ go_terms:GO:0004521,GO:0003723 functional_description:"Poly(U)-specific endoribonuclease-A (AHRD V1 **** ENDUA_XENLA); contains Interpro domain(s) IPR018998 Endoribonuclease XendoU "; GO:0004521,GO:0003723 NbS00061593g0001.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|434; (*SWP) sp|Q9SIA4|MATE5_ARATH (e_value=2e-35) MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=2 SV=1;; (*TAIR) AT4G22790.1 (e_value=9e-155) | Symbols: | MATE efflux family protein | chr4:11975153-11976628 REVERSE LENGTH=491;; (*ITAG) Solyc08g079730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60384398-60385840 transcript_region:SL2.40ch08:60384398..60385840+ go_terms:GO:0015299,GO:0015559 functional_description:"Mate efflux family protein (AHRD V1 **-- D7ME03_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00000230g0016.1 protein AED:0.24 eAED:0.24 QI:232|0.9|0.90|1|0.9|0.90|11|920|441; (*SWP) sp|Q9M401|BCAT3_ARATH (e_value=0.0) Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1;; (*TAIR) AT3G49680.1 (e_value=0.0) | Symbols: ATBCAT-3, BCAT3 | branched-chain aminotransferase 3 | chr3:18422768-18425473 FORWARD LENGTH=413;; (*ITAG) Solyc02g091970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47756090-47762810 transcript_region:SL2.40ch02:47756090..47762810- go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q9SNY8_SOLTU); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00000230g0013.1 protein AED:0.03 eAED:0.03 QI:200|1|0.88|1|1|1|9|606|939; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=0.0) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT5G65770.3 (e_value=0.0) | Symbols: LINC4 | little nuclei4 | chr5:26311587-26315610 FORWARD LENGTH=1010;; (*ITAG) Solyc02g091960.2.1 (e_value=9e-168) genomic_reference:SL2.40ch02 gene_region:47749109-47755539 transcript_region:SL2.40ch02:47749109..47755539+ functional_description:"Nuclear matrix constituent protein 2 (AHRD V1 ***- D2YZU6_APIGR)"; NbS00000230g0011.1 protein AED:0.24 eAED:0.27 QI:0|0.55|0.6|1|0.55|0.6|10|0|314; (*SWP) sp|Q5RBU7|PCP_PONAB (e_value=1e-76) Lysosomal Pro-X carboxypeptidase OS=Pongo abelii GN=PRCP PE=2 SV=1;; (*TAIR) AT5G65760.1 (e_value=2e-144) | Symbols: | Serine carboxypeptidase S28 family protein | chr5:26308289-26310891 FORWARD LENGTH=515;; (*ITAG) Solyc02g091950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47741858-47747519 transcript_region:SL2.40ch02:47741858..47747519+ go_terms:GO:0008239,GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* Q9FLH1_ARATH); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0008239,GO:0004185 NbS00016442g0021.1 protein AED:0.23 eAED:0.25 QI:25|0.83|0.57|1|1|1|7|0|548; (*SWP) sp|P58223|Y4837_ARATH (e_value=2e-54) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=1e-178) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc05g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2247886-2252833 transcript_region:SL2.40ch05:2247886..2252833- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00016442g0017.1 protein AED:0.26 eAED:0.27 QI:0|0.5|0|1|1|1|3|0|149; (*SWP) sp|Q5NRN4|CSPL1_SOLDE (e_value=1e-62) CASP-like protein SDM1_58t00016 OS=Solanum demissum GN=SDM1_58t00016 PE=3 SV=1;; (*TAIR) AT5G15290.1 (e_value=3e-30) | Symbols: | Uncharacterised protein family (UPF0497) | chr5:4967094-4967846 FORWARD LENGTH=187;; (*ITAG) Solyc05g007790.2.1 (e_value=2e-63) genomic_reference:SL2.40ch05 gene_region:2238342-2239417 transcript_region:SL2.40ch05:2238342..2239417- functional_description:"UPF0497 membrane protein 1 (AHRD V1 ***- U4971_SOLDE); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00016442g0020.1 protein AED:0.00 eAED:0.00 QI:206|1|1|1|1|1|2|489|193; (*TAIR) AT1G14150.1 (e_value=3e-58) | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4840632 FORWARD LENGTH=190;; (*ITAG) Solyc05g007780.2.1 (e_value=1e-111) genomic_reference:SL2.40ch05 gene_region:2237416-2238373 transcript_region:SL2.40ch05:2237416..2238373+ go_terms:GO:0019898 functional_description:"Oxygen evolving enhancer protein 3 (AHRD V1 ***- B6SZC8_MAIZE); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "; GO:0019898 NbS00016442g0019.1 protein AED:0.10 eAED:0.10 QI:138|1|1|1|0.83|0.71|7|2335|197; (*TAIR) AT1G69510.2 (e_value=2e-24) | Symbols: | cAMP-regulated phosphoprotein 19-related protein | chr1:26126779-26127725 FORWARD LENGTH=137;; (*ITAG) Solyc05g007800.2.1 (e_value=6e-54) genomic_reference:SL2.40ch05 gene_region:2242445-2245811 transcript_region:SL2.40ch05:2242445..2245811+ functional_description:"Negatively light-regulated protein (AHRD V1 *-*- Q9ZTG1_VERFO); contains Interpro domain(s) IPR012482 Lg106-like "; NbS00016442g0018.1 protein AED:0.19 eAED:0.19 QI:543|1|0.8|1|0.5|0.4|5|0|406; (*TAIR) AT1G14180.1 (e_value=1e-67) | Symbols: | RING/U-box superfamily protein | chr1:4847828-4848970 FORWARD LENGTH=348;; (*ITAG) Solyc05g007820.2.1 (e_value=3e-134) genomic_reference:SL2.40ch05 gene_region:2261637-2262966 transcript_region:SL2.40ch05:2261637..2262966+ go_terms:GO:0008270 functional_description:"At1g19680-like protein (Fragment) (AHRD V1 *--- Q3YI70_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00016442g0025.1 protein AED:0.49 eAED:0.84 QI:0|0|0|0.66|1|1|3|0|66 NbS00004343g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0.25|4|0|245 NbS00004343g0004.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.66|0|0.33|3|0|132 NbS00060476g0010.1 protein AED:0.35 eAED:0.35 QI:258|1|1|1|0.6|0.83|6|712|312; (*ITAG) Solyc05g055830.2.1 (e_value=2e-180) genomic_reference:SL2.40ch05 gene_region:64455892-64463450 transcript_region:SL2.40ch05:64455892..64463450+ go_terms:GO:0003676 functional_description:"R3H domain-containing protein 2 (AHRD V1 *--- R3HD2_BOVIN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00060476g0006.1 protein AED:0.37 eAED:0.37 QI:17|1|1|1|1|1|2|288|80; (*TAIR) AT1G79790.2 (e_value=2e-26) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:30016987-30017904 REVERSE LENGTH=198;; (*ITAG) Solyc05g055820.2.1 (e_value=4e-42) genomic_reference:SL2.40ch05 gene_region:64451860-64453633 transcript_region:SL2.40ch05:64451860..64453633+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase (AHRD V1 ***- D6A5G5_9ACTO); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00060476g0008.1 protein AED:0.40 eAED:0.52 QI:148|0.5|0.2|1|1|0.8|5|0|180; (*TAIR) AT1G79790.1 (e_value=2e-71) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:30016987-30018186 REVERSE LENGTH=245;; (*ITAG) Solyc05g055810.2.1 (e_value=9e-57) genomic_reference:SL2.40ch05 gene_region:64449022-64453332 transcript_region:SL2.40ch05:64449022..64453332+ functional_description:"Catalytic/ hydrolase (AHRD V1 ***- B6TLB5_MAIZE)"; NbS00039272g0019.1 protein AED:0.09 eAED:0.10 QI:178|1|0.66|1|0.5|0.66|3|0|167; (*SWP) sp|Q84TF5|RHA4A_ARATH (e_value=2e-36) RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1;; (*TAIR) AT4G24015.1 (e_value=1e-37) | Symbols: | RING/U-box superfamily protein | chr4:12469887-12471197 REVERSE LENGTH=174;; (*ITAG) Solyc08g082680.2.1 (e_value=1e-79) genomic_reference:SL2.40ch08 gene_region:62552444-62554475 transcript_region:SL2.40ch08:62552444..62554475- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00039272g0018.1 protein AED:0.35 eAED:0.35 QI:0|1|0|1|0|1|2|0|197; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=2e-78) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1;; (*TAIR) AT1G64510.1 (e_value=1e-79) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954993-23956205 REVERSE LENGTH=207;; (*ITAG) Solyc08g082690.2.1 (e_value=2e-96) genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00039272g0021.1 protein AED:0.05 eAED:0.06 QI:19|0.66|0|1|0|0|4|0|440; (*SWP) sp|Q0WVN5|CSLG3_ARATH (e_value=2e-172) Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2;; (*TAIR) AT4G23990.1 (e_value=2e-173) | Symbols: ATCSLG3, CSLG3 | cellulose synthase like G3 | chr4:12456491-12460498 FORWARD LENGTH=751;; (*ITAG) Solyc08g082640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62536639-62541440 transcript_region:SL2.40ch08:62536639..62541440+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IMB3_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00039272g0017.1 protein AED:0.12 eAED:0.12 QI:274|0.91|0.92|1|1|1|13|413|626; (*SWP) sp|Q9XED8|ARFI_ARATH (e_value=0.0) Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1;; (*TAIR) AT4G23980.2 (e_value=0.0) | Symbols: ARF9 | auxin response factor 9 | chr4:12451592-12454737 FORWARD LENGTH=636;; (*ITAG) Solyc08g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62527536-62531812 transcript_region:SL2.40ch08:62527536..62531812+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 **** D7R605_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00039272g0015.1 protein AED:0.41 eAED:0.41 QI:0|0.2|0.16|0.5|0.6|0.66|6|0|244; (*SWP) sp|Q9SGW3|RP12A_ARATH (e_value=3e-125) 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1;; (*TAIR) AT1G64520.1 (e_value=2e-126) | Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267;; (*ITAG) Solyc08g082700.2.1 (e_value=8e-144) genomic_reference:SL2.40ch08 gene_region:62568517-62573377 transcript_region:SL2.40ch08:62568517..62573377+ go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 8 (AHRD V1 ***- B4FCY9_MAIZE); contains Interpro domain(s) IPR006746 26S proteasome non-ATPase regulatory subunit Rpn12 "; GO:0005515,GO:0004175 NbS00007936g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|84; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=2e-25) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=2e-26) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc01g107270.2.1 (e_value=8e-28) genomic_reference:SL2.40ch01 gene_region:86633333-86638322 transcript_region:SL2.40ch01:86633333..86638322- go_terms:GO:0006189,GO:0003824 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 ***- A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0006189,GO:0003824 NbS00007936g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|97; (*ITAG) Solyc11g044630.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:35994055-35994326 transcript_region:SL2.40ch11:35994055..35994326- functional_description:"Unknown Protein (AHRD V1)"; NbS00030973g0003.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|387|69; (*TAIR) AT4G19400.1 (e_value=2e-28) | Symbols: | Profilin family protein | chr4:10581037-10581909 REVERSE LENGTH=148;; (*ITAG) Solyc08g075070.2.1 (e_value=4e-35) genomic_reference:SL2.40ch08 gene_region:56393010-56396967 transcript_region:SL2.40ch08:56393010..56396967- go_terms:GO:0015629 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002097 Profilin/allergen "; GO:0015629 NbS00030973g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.63|0.90|0.8|0.63|11|0|343; (*TAIR) AT4G19420.1 (e_value=3e-166) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc10g050750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:45938670-45941292 transcript_region:SL2.40ch10:45938670..45941292- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00048793g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.57|1|1|1|7|0|802; (*SWP) sp|Q9STE8|TC753_ARATH (e_value=0.0) Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1;; (*TAIR) AT3G46740.1 (e_value=0.0) | Symbols: TOC75-III, MAR1 | translocon at the outer envelope membrane of chloroplasts 75-III | chr3:17216104-17219296 REVERSE LENGTH=818;; (*ITAG) Solyc06g076360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43831465-43835828 transcript_region:SL2.40ch06:43831465..43835828- go_terms:GO:0006886,GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- Q31PR1_SYNE7); contains Interpro domain(s) IPR005689 Chloroplast envelope protein translocase, IAP75 "; GO:0006886,GO:0019867 NbS00048793g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.4|1|0.5|0.6|5|108|466; (*TAIR) AT3G46750.1 (e_value=3e-26) | Symbols: | unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). | chr3:17219944-17221461 FORWARD LENGTH=388;; (*ITAG) Solyc06g076370.2.1 (e_value=5e-151) genomic_reference:SL2.40ch06 gene_region:43838888-43840782 transcript_region:SL2.40ch06:43838888..43840782+ functional_description:"Eukaryotic RNA polymerase II heptapeptide repeat (AHRD V1 *--- Q2HS33_MEDTR)"; NbS00007911g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|0.75|1|1|4|344|230; (*SWP) sp|Q9FLC0|PER52_ARATH (e_value=5e-117) Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1;; (*TAIR) AT5G05340.1 (e_value=4e-118) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc05g052280.2.1 (e_value=4e-143) genomic_reference:SL2.40ch05 gene_region:61706113-61709182 transcript_region:SL2.40ch05:61706113..61709182- go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- B9VRK9_CAPAN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00007911g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.85|1|0.5|0.57|7|493|269; (*SWP) sp|P11796|SODM_NICPL (e_value=7e-155) Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1;; (*TAIR) AT3G10920.1 (e_value=9e-134) | Symbols: MSD1, MEE33, ATMSD1 | manganese superoxide dismutase 1 | chr3:3418015-3419581 FORWARD LENGTH=231;; (*ITAG) Solyc06g049080.2.1 (e_value=5e-153) genomic_reference:SL2.40ch06 gene_region:28852597-28855492 transcript_region:SL2.40ch06:28852597..28855492+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** A5BR41_VITVI); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00002645g0010.1 protein AED:0.26 eAED:0.26 QI:404|0.92|0.85|1|0.92|0.92|14|455|672; (*SWP) sp|Q9ASS7|CAAT2_ARATH (e_value=0.0) Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1;; (*TAIR) AT1G58030.1 (e_value=0.0) | Symbols: CAT2 | cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635;; (*ITAG) Solyc10g081460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61835895-61843695 transcript_region:SL2.40ch10:61835895..61843695- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C3GEP6_BACTU); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00002645g0008.1 protein AED:0.28 eAED:0.28 QI:85|1|1|1|0.88|0.8|10|465|278; (*SWP) sp|Q4PGW7|NCB5R_USTMA (e_value=6e-91) NADH-cytochrome b5 reductase 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CBR1 PE=3 SV=1;; (*TAIR) AT5G17770.1 (e_value=2e-173) | Symbols: ATCBR, CBR1, CBR | NADH:cytochrome B5 reductase 1 | chr5:5864543-5866495 REVERSE LENGTH=281;; (*ITAG) Solyc10g081440.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61822969-61825835 transcript_region:SL2.40ch10:61822969..61825835- go_terms:GO:0055114 functional_description:"NADH cytochrome b5 reductase (AHRD V1 ***- Q5PY86_VERFO); contains Interpro domain(s) IPR008333 Oxidoreductase FAD-binding region "; GO:0055114 NbS00002645g0006.1 protein AED:0.25 eAED:0.25 QI:106|0.66|0.75|1|0|0|4|189|455; (*TAIR) AT5G17720.1 (e_value=2e-132) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5845934-5847653 FORWARD LENGTH=443;; (*ITAG) Solyc10g081450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61831485-61834714 transcript_region:SL2.40ch10:61831485..61834714+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LX46_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00024393g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|4|37|395; (*SWP) sp|Q6X7K0|WOX1_ARATH (e_value=5e-61) WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2;; (*TAIR) AT3G18010.1 (e_value=4e-62) | Symbols: WOX1 | WUSCHEL related homeobox 1 | chr3:6161155-6163183 REVERSE LENGTH=350;; (*ITAG) Solyc03g118770.2.1 (e_value=2e-150) genomic_reference:SL2.40ch03 gene_region:61649126-61651488 transcript_region:SL2.40ch03:61649126..61651488- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00026888g0002.1 protein AED:0.13 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|298; (*SWP) sp|P14641|TBA2_MAIZE (e_value=1e-141) Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1;; (*TAIR) AT4G14960.1 (e_value=6e-142) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548753-8550319 REVERSE LENGTH=427;; (*ITAG) Solyc08g006890.2.1 (e_value=1e-144) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00026888g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|145; (*ITAG) Solyc11g056510.1.1 (e_value=5e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026888g0007.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.75|0.33|0.5|4|0|223; (*ITAG) Solyc11g011230.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009395g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|565; (*SWP) sp|Q9FKP1|CCX1_ARATH (e_value=5e-138) Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1;; (*TAIR) AT5G17860.1 (e_value=4e-139) | Symbols: CAX7 | calcium exchanger 7 | chr5:5902638-5904350 REVERSE LENGTH=570;; (*ITAG) Solyc09g072690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60804635-60806341 transcript_region:SL2.40ch09:60804635..60806341- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (Fragment) (AHRD V1 *-** A3GGW1_PICST); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00009395g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|102; (*SWP) sp|Q9FKP1|CCX1_ARATH (e_value=5e-36) Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1;; (*TAIR) AT5G17860.1 (e_value=4e-37) | Symbols: CAX7 | calcium exchanger 7 | chr5:5902638-5904350 REVERSE LENGTH=570;; (*ITAG) Solyc09g072690.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60804635-60806341 transcript_region:SL2.40ch09:60804635..60806341- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (Fragment) (AHRD V1 *-** A3GGW1_PICST); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00004544g0006.1 protein AED:0.18 eAED:0.20 QI:0|0.78|0.7|1|0.73|0.8|20|0|778; (*SWP) sp|Q6NLV4|FY_ARATH (e_value=0.0) Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1;; (*TAIR) AT5G13480.1 (e_value=0.0) | Symbols: FY | Transducin/WD40 repeat-like superfamily protein | chr5:4326638-4331557 REVERSE LENGTH=647;; (*ITAG) Solyc08g067040.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53153910-53170013 transcript_region:SL2.40ch08:53153910..53170013+ go_terms:GO:0005515 functional_description:"Polyadenylation factor subunit 2 (AHRD V1 *--- D6RKS9_COPC7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00029082g0006.1 protein AED:0.12 eAED:0.12 QI:349|0.45|0.5|1|0.63|0.66|12|0|835; (*SWP) sp|Q9LQ02|NRPD1_ARATH (e_value=0.0) DNA-directed RNA polymerase D subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=1;; (*TAIR) AT1G63020.2 (e_value=0.0) | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453;; (*ITAG) Solyc08g080210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60700882-60708083 transcript_region:SL2.40ch08:60700882..60708083- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9GKP9_POPTR); contains Interpro domain(s) IPR000722 RNA polymerase, alpha subunit "; GO:0006350 NbS00025548g0007.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|1|1|2|600|108; (*TAIR) AT5G55140.1 (e_value=3e-50) | Symbols: | ribosomal protein L30 family protein | chr5:22381370-22381787 FORWARD LENGTH=109;; (*ITAG) Solyc02g068770.2.1 (e_value=2e-69) genomic_reference:SL2.40ch02 gene_region:33264577-33268399 transcript_region:SL2.40ch02:33264577..33268399+ go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L30 (AHRD V1 --*- C0B6M9_9FIRM); contains Interpro domain(s) IPR005996 Ribosomal protein L30, bacterial-type "; GO:0005840,GO:0015934 NbS00021359g0011.1 protein AED:0.03 eAED:0.03 QI:556|1|1|1|1|1|2|400|125; (*TAIR) AT3G52570.1 (e_value=7e-49) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:19501145-19502795 FORWARD LENGTH=335;; (*ITAG) Solyc10g083270.1.1 (e_value=2e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62426455-62429554 transcript_region:SL2.40ch10:62426455..62429554+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LY00_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00021359g0014.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|146; (*TAIR) AT3G52570.1 (e_value=6e-45) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:19501145-19502795 FORWARD LENGTH=335;; (*ITAG) Solyc10g083270.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62426455-62429554 transcript_region:SL2.40ch10:62426455..62429554+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LY00_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00021359g0016.1 protein AED:0.02 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|208; (*SWP) sp|P0DI50|CASP_TOBAC (e_value=4e-68) Casparian strip membrane protein 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G36100.1 (e_value=1e-44) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206;; (*ITAG) Solyc10g083250.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62419572-62420904 transcript_region:SL2.40ch10:62419572..62420904- functional_description:"UPF0497 membrane protein 7 (AHRD V1 ***- U4977_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00021359g0013.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|314; (*TAIR) AT3G15040.1 (e_value=8e-18) | Symbols: | Protein of unknown function, DUF584 | chr3:5065445-5066176 REVERSE LENGTH=243;; (*ITAG) Solyc09g010140.1.1 (e_value=2e-83) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:3516951-3517673 transcript_region:SL2.40ch09:3516951..3517673+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00040969g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|152; (*TAIR) AT2G44380.1 (e_value=8e-35) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073840.1.1 (e_value=3e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:70430912-70432291 transcript_region:SL2.40ch01:70430912..70432291- go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FK70_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00040969g0002.1 protein AED:0.34 eAED:0.53 QI:0|0|0|1|0|0|2|0|82; (*ITAG) Solyc01g073860.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:70442024-70442791 transcript_region:SL2.40ch01:70442024..70442791- functional_description:"CHP-rich zinc finger protein (AHRD V1 **-- C8CBB1_WHEAT); contains Interpro domain(s) IPR011424 C1-like "; NbS00036323g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|79; (*ITAG) Solyc10g084070.1.1 (e_value=4e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044123g0001.1 protein AED:0.18 eAED:0.55 QI:0|0|0|1|0|0|2|0|168 NbS00050701g0002.1 protein AED:0.29 eAED:0.49 QI:0|0|0|1|0|0|2|0|88 NbS00000137g0014.1 protein AED:0.09 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.33|3|0|483; (*SWP) sp|Q940Q2|PPR19_ARATH (e_value=6e-172) Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1;; (*TAIR) AT1G07590.1 (e_value=4e-173) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2336649-2338481 REVERSE LENGTH=534;; (*ITAG) Solyc06g071900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40683466-40686760 transcript_region:SL2.40ch06:40683466..40686760- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH37_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000137g0015.1 protein AED:0.13 eAED:0.14 QI:534|0.88|0.7|1|0.55|0.6|10|0|1108; (*SWP) sp|O95714|HERC2_HUMAN (e_value=4e-52) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc11g065120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47535935-47556450 transcript_region:SL2.40ch11:47535935..47556450+ go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbS00000137g0013.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.33|0.5|0.66|3|0|147; (*SWP) sp|Q940Q2|PPR19_ARATH (e_value=4e-38) Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1;; (*TAIR) AT1G07590.1 (e_value=3e-39) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2336649-2338481 REVERSE LENGTH=534;; (*ITAG) Solyc06g071900.2.1 (e_value=6e-53) genomic_reference:SL2.40ch06 gene_region:40683466-40686760 transcript_region:SL2.40ch06:40683466..40686760- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH37_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000137g0012.1 protein AED:0.18 eAED:0.18 QI:123|1|1|1|1|1|3|432|74; (*TAIR) AT3G07910.1 (e_value=2e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:2523367-2524048 REVERSE LENGTH=74;; (*ITAG) Solyc12g099710.1.1 (e_value=5e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65082354-65085403 transcript_region:SL2.40ch12:65082354..65085403+ functional_description:"Chromosome 04 contig 1 DNA sequence (AHRD V1 *-*- Q01AI6_OSTTA); contains Interpro domain(s) IPR018450 Reactive oxygen species modulator 1 "; NbS00010295g0007.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|119; (*SWP) sp|P69569|RBL_EUPES (e_value=5e-22) Ribulose bisphosphate carboxylase large chain (Fragment) OS=Euphorbia esula GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=7e-19) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=6e-21) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00010295g0008.1 protein AED:0.15 eAED:0.15 QI:102|1|0.85|1|0.66|0.71|7|0|509; (*SWP) sp|Q8W4I7|CDPKD_ARATH (e_value=0.0) Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2;; (*TAIR) AT3G51850.1 (e_value=0.0) | Symbols: CPK13 | calcium-dependent protein kinase 13 | chr3:19232667-19235526 FORWARD LENGTH=528;; (*ITAG) Solyc09g005550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:369215-377428 transcript_region:SL2.40ch09:369215..377428- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 13 (AHRD V1 **** B9IGA3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00024062g0002.1 protein AED:0.03 eAED:0.11 QI:0|0|0|1|1|1|2|0|266; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=9e-112) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=7e-113) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc09g014220.2.1 (e_value=2e-129) genomic_reference:SL2.40ch09 gene_region:5712333-5715002 transcript_region:SL2.40ch09:5712333..5715002- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00000753g0004.1 protein AED:0.15 eAED:0.15 QI:391|1|1|1|1|1|10|479|708; (*SWP) sp|Q3E7D0|NAT12_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 12 OS=Arabidopsis thaliana GN=NAT12 PE=1 SV=3;; (*TAIR) AT2G27810.1 (e_value=0.0) | Symbols: ATNAT12, NAT12 | nucleobase-ascorbate transporter 12 | chr2:11852338-11855988 FORWARD LENGTH=709;; (*ITAG) Solyc11g066900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49783798-49792281 transcript_region:SL2.40ch11:49783798..49792281- go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-- B9HQT7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00046069g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|104 NbS00055018g0001.1 protein AED:0.22 eAED:0.22 QI:500|0.83|1|1|0.83|0.71|7|1666|300; (*TAIR) AT5G04250.2 (e_value=1e-57) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc04g024710.2.1 (e_value=2e-125) genomic_reference:SL2.40ch04 gene_region:14102169-14113772 transcript_region:SL2.40ch04:14102169..14113772+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00001065g0002.1 protein AED:0.11 eAED:0.12 QI:1173|0.84|0.85|0.92|0.61|0.5|14|956|330; (*TAIR) AT4G15840.1 (e_value=1e-86) | Symbols: | BTB/POZ domain-containing protein | chr4:8996963-9000852 FORWARD LENGTH=836;; (*ITAG) Solyc01g080620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72360030-72370043 transcript_region:SL2.40ch01:72360030..72370043+ go_terms:GO:0005515 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_HUMAN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00006192g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.8|1|1|1|5|255|502; (*ITAG) Solyc10g084970.1.1 (e_value=2e-32) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63649834-63651609 transcript_region:SL2.40ch10:63649834..63651609+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025125g0002.1 protein AED:0.48 eAED:0.79 QI:0|0.33|0|1|0|0|4|0|51 NbS00000847g0021.1 protein AED:0.12 eAED:0.12 QI:228|0.94|0.88|1|0.94|0.94|18|0|672; (*TAIR) AT5G13560.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). | chr5:4361579-4366318 REVERSE LENGTH=679;; (*ITAG) Solyc04g010220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3536536-3549046 transcript_region:SL2.40ch04:3536536..3549046+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000847g0011.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|3|0|495; (*SWP) sp|O64495|SDD1_ARATH (e_value=4e-100) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=3e-101) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g079990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60531397-60533625 transcript_region:SL2.40ch08:60531397..60533625+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q9LRF2_ORYSJ); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00000847g0023.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.25|0.4|5|0|980; (*SWP) sp|O64495|SDD1_ARATH (e_value=1e-172) Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1;; (*TAIR) AT1G04110.1 (e_value=1e-173) | Symbols: SDD1 | Subtilase family protein | chr1:1061457-1063784 REVERSE LENGTH=775;; (*ITAG) Solyc08g079980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60526887-60529157 transcript_region:SL2.40ch08:60526887..60529157+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00000847g0014.1 protein AED:0.67 eAED:0.96 QI:0|0|0|0.5|1|1|2|0|89 NbS00000847g0022.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|506; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-132) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=2e-133) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc08g079980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60526887-60529157 transcript_region:SL2.40ch08:60526887..60529157+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00060380g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|0|0|2|0|241; (*SWP) sp|Q9FLI0|BH120_ARATH (e_value=3e-20) Transcription factor bHLH120 OS=Arabidopsis thaliana GN=BHLH120 PE=2 SV=2;; (*TAIR) AT5G51790.1 (e_value=2e-21) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21039762-21040594 FORWARD LENGTH=204;; (*ITAG) Solyc09g074810.2.1 (e_value=1e-46) genomic_reference:SL2.40ch09 gene_region:62141125-62143414 transcript_region:SL2.40ch09:62141125..62143414+ go_terms:GO:0003700 functional_description:"Transcription factor bHLH36 (AHRD V1 **** BH036_ARATH)"; GO:0003700 NbS00060738g0002.1 protein AED:0.07 eAED:0.09 QI:0|0.33|0.25|1|1|1|4|0|458; (*SWP) sp|P43643|EF1A_TOBAC (e_value=0.0) Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00001179g0005.1 protein AED:0.23 eAED:0.23 QI:519|0.75|0.4|1|0.75|0.6|5|0|541; (*SWP) sp|Q8GZM7|PIF1_ARATH (e_value=5e-20) Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1;; (*TAIR) AT2G20180.1 (e_value=2e-21) | Symbols: PIL5, PIF1 | phytochrome interacting factor 3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407;; (*ITAG) Solyc09g063010.2.1 (e_value=1e-104) genomic_reference:SL2.40ch09 gene_region:56525973-56536072 transcript_region:SL2.40ch09:56525973..56536072- go_terms:GO:0003700,GO:0010313 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700,GO:0010313 NbS00021745g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|136 NbS00001579g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|421; (*SWP) sp|Q9LRT1|Y3804_ARATH (e_value=2e-27) Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1;; (*TAIR) AT2G34930.1 (e_value=2e-35) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3549546-3552683 transcript_region:SL2.40ch07:3549546..3552683+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001579g0001.1 protein AED:0.50 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|126; (*TAIR) AT2G33060.1 (e_value=9e-12) | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808;; (*ITAG) Solyc07g008600.1.1 (e_value=8e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001579g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|464; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=9e-25) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=2e-48) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc07g008600.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001579g0009.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|3|0|224; (*ITAG) Solyc07g008600.1.1 (e_value=2e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3553058-3556042 transcript_region:SL2.40ch07:3553058..3556042- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00001579g0012.1 protein AED:0.45 eAED:0.54 QI:0|0|0|1|0|0|3|0|90 NbS00037793g0005.1 protein AED:0.03 eAED:0.03 QI:109|1|1|1|1|1|2|217|394; (*SWP) sp|O49523|DSEL_ARATH (e_value=1e-145) Phospholipase A1-IIgamma OS=Arabidopsis thaliana GN=DSEL PE=1 SV=1;; (*TAIR) AT4G18550.1 (e_value=1e-146) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36656468-36657997 transcript_region:SL2.40ch02:36656468..36657997+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like (AHRD V1 ***- Q8RZ40_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbC25667420g0004.1 protein AED:0.45 eAED:0.83 QI:22|0|0|0.66|1|0.66|3|0|83; (*TAIR) AT4G38470.1 (e_value=1e-28) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc10g055720.1.1 (e_value=6e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52722218-52731615 transcript_region:SL2.40ch10:52722218..52731615- go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00026792g0007.1 protein AED:0.30 eAED:0.31 QI:0|0.6|0.5|1|0.6|0.5|6|0|446; (*SWP) sp|B0JW21|RSGA_MICAN (e_value=1e-63) Putative ribosome biogenesis GTPase RsgA OS=Microcystis aeruginosa (strain NIES-843) GN=rsgA PE=3 SV=1;; (*TAIR) AT1G67440.1 (e_value=1e-167) | Symbols: emb1688 | Minichromosome maintenance (MCM2/3/5) family protein | chr1:25263905-25265551 REVERSE LENGTH=433;; (*ITAG) Solyc05g015310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10346862-10351098 transcript_region:SL2.40ch05:10346862..10351098+ go_terms:GO:0043022,GO:0005515 functional_description:"Ribosome-associated GTPase (AHRD V1 **** A3IKD0_9CHRO); contains Interpro domain(s) IPR004881 GTPase EngC "; GO:0043022,GO:0005515 NbS00026792g0002.1 protein AED:0.00 eAED:0.00 QI:809|1|1|1|0|0.5|2|37|116 NbS00043246g0004.1 protein AED:0.23 eAED:0.24 QI:18|0.77|0.8|1|0.77|0.8|10|287|415; (*SWP) sp|Q9BZJ4|S2539_HUMAN (e_value=2e-36) Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=2;; (*TAIR) AT4G27940.1 (e_value=6e-172) | Symbols: ATMTM1, MTM1 | manganese tracking factor for mitochondrial SOD2 | chr4:13904745-13907036 FORWARD LENGTH=413;; (*ITAG) Solyc03g007430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1969931-1977886 transcript_region:SL2.40ch03:1969931..1977886- go_terms:GO:0000095,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0000095,GO:0016530 NbS00000104g0003.1 protein AED:0.04 eAED:0.04 QI:78|1|1|1|1|1|4|160|123; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=8e-77) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT5G02610.1 (e_value=7e-75) | Symbols: | Ribosomal L29 family protein | chr5:587611-588547 FORWARD LENGTH=123;; (*ITAG) Solyc06g075620.2.1 (e_value=1e-79) genomic_reference:SL2.40ch06 gene_region:43394530-43397000 transcript_region:SL2.40ch06:43394530..43397000- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00011033g0017.1 protein AED:0.07 eAED:0.08 QI:0|0.62|0.55|0.88|0.62|0.66|9|0|446; (*SWP) sp|Q54LB8|VP13A_DICDI (e_value=4e-22) Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1;; (*TAIR) AT1G48090.1 (e_value=0.0) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)"; NbS00011033g0018.1 protein AED:0.35 eAED:0.35 QI:36|0.28|0.12|0.37|0.85|0.87|8|0|288; (*TAIR) AT1G48090.1 (e_value=2e-100) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=6e-125) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00001116g0002.1 protein AED:0.36 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|131; (*TAIR) AT2G03360.2 (e_value=2e-28) | Symbols: | Glycosyltransferase family 61 protein | chr2:1022287-1024273 REVERSE LENGTH=455;; (*ITAG) Solyc05g012660.1.1 (e_value=8e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5871174-5872877 transcript_region:SL2.40ch05:5871174..5872877+ go_terms:GO:0016757,GO:0006508 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ5_WHEAT); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757,GO:0006508 NbS00001116g0003.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|217; (*TAIR) AT2G03370.1 (e_value=5e-70) | Symbols: | Glycosyltransferase family 61 protein | chr2:1024714-1026969 REVERSE LENGTH=452;; (*ITAG) Solyc05g012660.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5871174-5872877 transcript_region:SL2.40ch05:5871174..5872877+ go_terms:GO:0016757,GO:0006508 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ5_WHEAT); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757,GO:0006508 NbS00022479g0001.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|95 NbS00001890g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|565; (*SWP) sp|Q9SAD9|PPR40_ARATH (e_value=5e-171) Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1;; (*TAIR) AT1G13040.1 (e_value=4e-172) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:4447647-4449200 FORWARD LENGTH=517;; (*ITAG) Solyc06g008190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2072457-2073992 transcript_region:SL2.40ch06:2072457..2073992+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KPF1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015989g0009.1 protein AED:0.34 eAED:0.51 QI:0|0|0.25|0.5|0|0|4|131|117 NbS00015989g0012.1 protein AED:0.27 eAED:0.54 QI:0|0.5|0|1|0.5|0.33|3|0|130; (*TAIR) AT4G37510.1 (e_value=2e-36) | Symbols: | Ribonuclease III family protein | chr4:17626259-17628854 REVERSE LENGTH=537;; (*ITAG) Solyc10g080040.1.1 (e_value=1e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60770753-60775222 transcript_region:SL2.40ch10:60770753..60775222- go_terms:GO:0006396 functional_description:"Ribonuclease 3 (AHRD V1 *-*- C3BNS5_9BACI); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00015989g0002.1 protein AED:0.10 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|62|230; (*SWP) sp|Q9LN86|DRE1F_ARATH (e_value=1e-32) Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1;; (*TAIR) AT1G12610.1 (e_value=8e-34) | Symbols: DDF1 | Integrase-type DNA-binding superfamily protein | chr1:4290205-4290834 REVERSE LENGTH=209;; (*ITAG) Solyc12g056430.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47712910-47713521 transcript_region:SL2.40ch12:47712910..47713521+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 *-*- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00015989g0011.1 protein AED:0.20 eAED:0.33 QI:0|0|0|1|0|0|2|0|175; (*ITAG) Solyc01g087480.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:74197002-74197268 transcript_region:SL2.40ch01:74197002..74197268+ functional_description:"Photosystem Q(B) protein (AHRD V1 ***- B6VJV1_VITVI)"; NbS00002071g0002.1 protein AED:0.48 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|82; (*SWP) sp|C1K5M2|NDPS_SOLLC (e_value=9e-20) Dimethylallylcistransferase, chloroplastic OS=Solanum lycopersicum GN=NDPS1 PE=1 SV=1;; (*TAIR) AT5G58770.1 (e_value=3e-16) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr5:23734396-23735495 FORWARD LENGTH=310;; (*ITAG) Solyc06g059990.2.1 (e_value=1e-25) genomic_reference:SL2.40ch06 gene_region:34314506-34316141 transcript_region:SL2.40ch06:34314506..34316141- go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** Q5QXS4_IDILO); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00002071g0004.1 protein AED:0.23 eAED:0.23 QI:520|1|0.9|1|1|1|10|0|653; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-47) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT3G03810.1 (e_value=0.0) | Symbols: EDA30 | O-fucosyltransferase family protein | chr3:972190-975901 REVERSE LENGTH=656;; (*ITAG) Solyc06g059980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34298758-34313602 transcript_region:SL2.40ch06:34298758..34313602+ functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 *--- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00002071g0006.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|76; (*ITAG) Solyc06g059990.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:34314506-34316141 transcript_region:SL2.40ch06:34314506..34316141- go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** Q5QXS4_IDILO); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00024833g0005.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|478; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=1e-71) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=8e-73) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc05g007880.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2319572-2322236 transcript_region:SL2.40ch05:2319572..2322236- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00024833g0206.1 protein AED:0.40 eAED:0.44 QI:0|0.33|0.25|0.75|0.33|0.25|4|0|268 NbS00024833g0201.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|229 NbC25862411g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|400; (*SWP) sp|Q9SAB5|FBLK2_ARATH (e_value=1e-18) Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1;; (*TAIR) AT1G11620.1 (e_value=9e-20) | Symbols: | F-box and associated interaction domains-containing protein | chr1:3910833-3911924 FORWARD LENGTH=363;; (*ITAG) Solyc02g070620.2.1 (e_value=7e-165) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00034586g0008.1 protein AED:0.08 eAED:0.08 QI:72|1|1|1|0.83|0.57|7|579|163; (*SWP) sp|Q8GXF0|RA51C_ARATH (e_value=2e-84) DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2;; (*TAIR) AT2G45280.1 (e_value=1e-85) | Symbols: ATRAD51C, RAD51C | RAS associated with diabetes protein 51C | chr2:18670103-18672041 FORWARD LENGTH=363;; (*ITAG) Solyc05g050960.2.1 (e_value=9e-66) genomic_reference:SL2.40ch05 gene_region:60323768-60325084 transcript_region:SL2.40ch05:60323768..60325084+ go_terms:GO:0006259 functional_description:"DNA repair and recombination protein radA (AHRD V1 ***- D0KRU5_SULS9); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0006259 NbS00034586g0007.1 protein AED:0.28 eAED:0.35 QI:83|0.62|0.44|1|0.75|0.77|9|0|319; (*SWP) sp|Q32LQ3|OSGC2_DANRE (e_value=3e-48) Probable tRNA threonylcarbamoyladenosine biosynthesis protein osgepl1 OS=Danio rerio GN=osgepl1 PE=2 SV=2;; (*TAIR) AT2G45270.1 (e_value=3e-154) | Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480;; (*ITAG) Solyc05g050940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60312326-60319564 transcript_region:SL2.40ch05:60312326..60319564+ go_terms:GO:0005515,GO:0004125 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0005515,GO:0004125 NbS00002411g0010.1 protein AED:0.00 eAED:0.00 QI:173|1|1|1|1|1|2|186|75; (*TAIR) AT2G46330.1 (e_value=3e-15) | Symbols: AGP16, ATAGP16 | arabinogalactan protein 16 | chr2:19018730-19019108 REVERSE LENGTH=73;; (*ITAG) Solyc10g011730.2.1 (e_value=9e-18) genomic_reference:SL2.40ch10 gene_region:3981694-3982655 transcript_region:SL2.40ch10:3981694..3982655+ go_terms:GO:0005160 functional_description:"Arabinogalactan peptide 20 (AHRD V1 ***- AGP20_ARATH); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 "; GO:0005160 NbS00002411g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.57|0.25|1|0.85|0.75|8|0|1080; (*SWP) sp|Q9T014|SPA2_ARATH (e_value=0.0) Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2;; (*TAIR) AT4G11110.1 (e_value=0.0) | Symbols: SPA2 | SPA1-related 2 | chr4:6772163-6776675 FORWARD LENGTH=1036;; (*ITAG) Solyc08g081990.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62067369-62074700 transcript_region:SL2.40ch08:62067369..62074700- go_terms:GO:0042802 functional_description:"WD-40 repeat (AHRD V1 *--- Q3M9A6_ANAVT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00002411g0007.1 protein AED:0.20 eAED:0.60 QI:0|0|0|1|1|1|3|0|103; (*TAIR) AT5G41761.1 (e_value=4e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc01g095530.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:78523066-78523612 transcript_region:SL2.40ch01:78523066..78523612- functional_description:"Unknown Protein (AHRD V1)"; NbS00002411g0012.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|110 NbS00002411g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|336; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=2e-34) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=1e-35) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc08g081960.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62045738-62046757 transcript_region:SL2.40ch08:62045738..62046757+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00002411g0014.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|798; (*SWP) sp|P25848|PHY1_CERPU (e_value=7e-32) Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3 SV=3;; (*TAIR) AT1G64300.2 (e_value=0.0) | Symbols: | Protein kinase family protein | chr1:23863543-23865776 FORWARD LENGTH=717;; (*ITAG) Solyc08g081980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62063601-62066787 transcript_region:SL2.40ch08:62063601..62066787+ go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase A-Raf (AHRD V1 *-** ARAF_PIG); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0004712 NbS00056543g0003.1 protein AED:0.00 eAED:0.00 QI:158|1|1|1|0|0.5|2|1|129; (*TAIR) AT3G51380.1 (e_value=4e-31) | Symbols: IQD20 | IQ-domain 20 | chr3:19074036-19074426 REVERSE LENGTH=103;; (*ITAG) Solyc04g050050.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:44467392-44470126 transcript_region:SL2.40ch04:44467392..44470126- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00039578g0005.1 protein AED:0.04 eAED:0.22 QI:0|0|0.5|1|0|0.5|2|309|88 NbS00039578g0002.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|333; (*TAIR) AT3G48800.1 (e_value=2e-26) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:18095825-18096661 REVERSE LENGTH=278;; (*ITAG) Solyc05g023820.2.1 (e_value=8e-60) genomic_reference:SL2.40ch05 gene_region:29363682-29365771 transcript_region:SL2.40ch05:29363682..29365771+ functional_description:"SAM domain family protein (AHRD V1 **-- B6TSE6_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00020293g0001.1 protein AED:0.01 eAED:0.01 QI:305|0|0.5|1|0|0.5|2|214|326; (*SWP) sp|Q93WI2|TB1_MAIZE (e_value=5e-24) Transcription factor TEOSINTE BRANCHED 1 OS=Zea mays GN=TB1 PE=2 SV=2;; (*TAIR) AT3G18550.2 (e_value=6e-24) | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcription factor | chr3:6383769-6385604 FORWARD LENGTH=429;; (*ITAG) Solyc06g069240.1.1 (e_value=4e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39396681-39398027 transcript_region:SL2.40ch06:39396681..39398027+ functional_description:"Teosinte-branched-like protein (Fragment) (AHRD V1 *-*- Q9FNU7_POPTR); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00026965g0009.1 protein AED:0.06 eAED:0.06 QI:353|1|1|1|1|0.87|8|401|1012; (*SWP) sp|Q9C5W3|NADK2_ARATH (e_value=0.0) NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1;; (*TAIR) AT1G21640.1 (e_value=0.0) | Symbols: NADK2, ATNADK2 | NAD kinase 2 | chr1:7588726-7592669 FORWARD LENGTH=985;; (*ITAG) Solyc06g060060.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34359018-34368653 transcript_region:SL2.40ch06:34359018..34368653+ go_terms:GO:0042736,GO:0003951 functional_description:"NAD kinase (AHRD V1 **** Q3SZD3_BOVIN); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase "; GO:0042736,GO:0003951 NbS00026965g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.33|1|1|1|3|0|351; (*SWP) sp|Q0WPW4|ACCO5_ARATH (e_value=7e-146) 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1;; (*TAIR) AT1G77330.1 (e_value=6e-147) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307;; (*ITAG) Solyc06g060070.2.1 (e_value=2e-160) genomic_reference:SL2.40ch06 gene_region:34368757-34371533 transcript_region:SL2.40ch06:34368757..34371533- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q9FR98_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00025065g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|0.66|1|4|529|151; (*SWP) sp|Q9SMU7|SRP09_ARATH (e_value=5e-61) Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=2 SV=1;; (*TAIR) AT3G49100.1 (e_value=4e-62) | Symbols: | Signal recognition particle, SRP9/SRP14 subunit | chr3:18196944-18198298 FORWARD LENGTH=103;; (*ITAG) Solyc12g099820.1.1 (e_value=7e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65150312-65154390 transcript_region:SL2.40ch12:65150312..65154390- go_terms:GO:0048500 functional_description:"Signal recognition particle protein (AHRD V1 ***- A9P8V6_POPTR); contains Interpro domain(s) IPR008832 Signal recognition particle, SRP9 subunit "; GO:0048500 NbS00025065g0006.1 protein AED:0.35 eAED:0.35 QI:0|0.58|0.61|1|0.75|0.76|13|0|519; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT1G63500.1 (e_value=0.0) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487;; (*ITAG) Solyc12g099830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65155426-65160628 transcript_region:SL2.40ch12:65155426..65160628- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase 2 (AHRD V1 ***- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00048344g0008.1 protein AED:0.02 eAED:0.02 QI:154|1|0.5|1|1|1|2|0|317; (*SWP) sp|Q9LZ56|DOF51_ARATH (e_value=1e-39) Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana GN=DOF5.1 PE=2 SV=1;; (*TAIR) AT5G02460.1 (e_value=8e-41) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:539549-541058 REVERSE LENGTH=399;; (*ITAG) Solyc06g076030.2.1 (e_value=1e-104) genomic_reference:SL2.40ch06 gene_region:43590013-43591677 transcript_region:SL2.40ch06:43590013..43591677- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 ***- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00018329g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.75|1|1|4|0|168; (*TAIR) AT3G54290.1 (e_value=2e-56) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20104623-20105845 REVERSE LENGTH=350;; (*ITAG) Solyc11g006830.1.1 (e_value=7e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1397978-1400112 transcript_region:SL2.40ch11:1397978..1400112+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012312 Haemerythrin/HHE cation-binding motif "; NbS00039608g0007.1 protein AED:0.28 eAED:0.28 QI:2|0.2|0|0.5|0.4|0.33|6|0|447; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=0.0) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:642518-647246 transcript_region:SL2.40ch01:642518..647246+ go_terms:GO:0003779 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_PONAB); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0003779 NbS00039608g0006.1 protein AED:0.00 eAED:0.00 QI:174|1|1|1|1|1|2|390|179; (*TAIR) AT5G19860.1 (e_value=1e-56) | Symbols: | Protein of unknown function, DUF538 | chr5:6714533-6715837 REVERSE LENGTH=181;; (*ITAG) Solyc01g005980.2.1 (e_value=5e-102) genomic_reference:SL2.40ch01 gene_region:650449-652528 transcript_region:SL2.40ch01:650449..652528- functional_description:"POT family domain containing protein expressed (AHRD V1 *-*- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00053657g0004.1 protein AED:0.15 eAED:0.16 QI:0|1|1|1|0.66|0.75|4|0|225; (*SWP) sp|Q8W110|FRO4_ARATH (e_value=4e-64) Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1;; (*TAIR) AT5G23980.1 (e_value=3e-65) | Symbols: ATFRO4, FRO4 | ferric reduction oxidase 4 | chr5:8098167-8101282 REVERSE LENGTH=699;; (*ITAG) Solyc00g020840.2.1 (e_value=7e-112) genomic_reference:SL2.40ch00 gene_region:11901056-11902403 transcript_region:SL2.40ch00:11901056..11902403+ go_terms:GO:0016021 functional_description:"Ferric reductase (AHRD V1 ***- B5KGU9_MALXI); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0016021 NbS00013970g0010.1 protein AED:0.14 eAED:0.14 QI:367|0.5|0.33|1|0|0.33|3|0|275; (*TAIR) AT4G16380.1 (e_value=3e-26) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:9254638-9255955 FORWARD LENGTH=254;; (*ITAG) Solyc05g054210.2.1 (e_value=7e-35) genomic_reference:SL2.40ch05 gene_region:63317491-63319450 transcript_region:SL2.40ch05:63317491..63319450- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00013970g0005.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|1|1|2|0|639; (*SWP) sp|Q8GWE0|PP314_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3;; (*TAIR) AT4G16390.1 (e_value=0.0) | Symbols: SVR7 | pentatricopeptide (PPR) repeat-containing protein | chr4:9257985-9260093 FORWARD LENGTH=702;; (*ITAG) Solyc11g012670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5440678-5442747 transcript_region:SL2.40ch11:5440678..5442747- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRC5_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00013970g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.66|1|1|1|6|767|383; (*SWP) sp|Q8GYX3|MP705_ARATH (e_value=1e-74) Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1;; (*TAIR) AT4G17220.1 (e_value=8e-76) | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513;; (*ITAG) Solyc11g012660.1.1 (e_value=6e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5432721-5437270 transcript_region:SL2.40ch11:5432721..5437270+ functional_description:"microtubule associated protein Type 5 (AHRD V1 **-- Q8GYX3_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; NbS00023543g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|253; (*SWP) sp|P46897|ATHB7_ARATH (e_value=5e-68) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.1 (e_value=4e-69) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=258;; (*ITAG) Solyc01g096320.2.1 (e_value=2e-109) genomic_reference:SL2.40ch01 gene_region:79151283-79152562 transcript_region:SL2.40ch01:79151283..79152562- go_terms:GO:0016563,GO:0005509 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- Q9XH73_PRUAR); contains Interpro domain(s) IPR001356 Homeobox "; GO:0016563,GO:0005509 NbS00050028g0002.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|91 NbS00048988g0003.1 protein AED:0.21 eAED:0.26 QI:0|0.57|0.5|1|0|0.25|8|0|240; (*SWP) sp|Q54YK1|Y8631_DICDI (e_value=2e-14) Putative UDP-sugar transporter DDB_G0278631 OS=Dictyostelium discoideum GN=DDB_G0278631 PE=3 SV=2;; (*TAIR) AT4G32272.2 (e_value=1e-82) | Symbols: | Nucleotide/sugar transporter family protein | chr4:15577195-15579689 REVERSE LENGTH=359;; (*ITAG) Solyc07g007990.2.1 (e_value=1e-113) genomic_reference:SL2.40ch07 gene_region:2685699-2689886 transcript_region:SL2.40ch07:2685699..2689886- go_terms:GO:0005463 functional_description:"UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (AHRD V1 **** C1BM09_OSMMO); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005463 NbS00013564g0015.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.71|1|0.83|0.85|7|0|760; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=0.0) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G60750.1 (e_value=0.0) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=741;; (*ITAG) Solyc01g018020.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:26846738-26852758 transcript_region:SL2.40ch01:26846738..26852758+ go_terms:GO:0004802,GO:0008152 functional_description:"Transketolase-like protein (AHRD V1 ***- Q8LE99_ARATH); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0008152 NbS00013564g0017.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|739; (*SWP) sp|P25872|PAL1_TOBAC (e_value=0.0) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=0.0) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc05g056170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64706396-64710169 transcript_region:SL2.40ch05:64706396..64710169+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** Q50EX7_PETHY); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00013564g0019.1 protein AED:0.36 eAED:0.36 QI:283|0.87|0.66|1|0.5|0.55|9|0|240; (*SWP) sp|P22302|SODF_NICPL (e_value=2e-57) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G23310.1 (e_value=5e-109) | Symbols: FSD3 | Fe superoxide dismutase 3 | chr5:7850624-7852241 FORWARD LENGTH=263;; (*ITAG) Solyc02g021140.2.1 (e_value=9e-131) genomic_reference:SL2.40ch02 gene_region:12479343-12481654 transcript_region:SL2.40ch02:12479343..12481654- go_terms:GO:0008965,GO:0005507 functional_description:"Superoxide dismutase (AHRD V1 ***- B9S4J6_RICCO); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0008965,GO:0005507 NbS00007583g0006.1 protein AED:0.20 eAED:0.31 QI:0|0|0|1|0|0|3|0|184; (*SWP) sp|Q0PHS9|DES_CAPAN (e_value=3e-13) 9-divinyl ether synthase OS=Capsicum annuum GN=DES PE=2 SV=1;; (*ITAG) Solyc10g007960.1.1 (e_value=4e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2121096-2122571 transcript_region:SL2.40ch10:2121096..2122571- go_terms:GO:0019825,GO:0009978 functional_description:"Allene oxide synthase (AHRD V1 **-* A0MAV5_SOYBN); contains Interpro domain(s) IPR001128 Cytochrome P450 "; GO:0019825,GO:0009978 NbS00023345g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|239; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=3e-28) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT2G40830.3 (e_value=1e-53) | Symbols: RHC1A | RING-H2 finger C1A | chr2:17043642-17044628 FORWARD LENGTH=328;; (*ITAG) Solyc08g075910.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57154299-57155204 transcript_region:SL2.40ch08:57154299..57155204+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010185g0006.1 protein AED:0.02 eAED:0.02 QI:163|1|1|1|1|1|3|96|246; (*TAIR) AT4G17600.1 (e_value=2e-69) | Symbols: LIL3:1 | Chlorophyll A-B binding family protein | chr4:9803759-9804714 FORWARD LENGTH=262;; (*ITAG) Solyc03g094000.2.1 (e_value=5e-128) genomic_reference:SL2.40ch03 gene_region:49161329-49162572 transcript_region:SL2.40ch03:49161329..49162572- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- A9P991_POPTR)"; NbS00010185g0003.1 protein AED:0.24 eAED:0.24 QI:156|1|1|1|0.83|0.71|7|736|202; (*SWP) sp|Q8VYB1|MED31_ARATH (e_value=4e-78) Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1;; (*TAIR) AT5G19910.1 (e_value=3e-79) | Symbols: MED31 | SOH1 family protein | chr5:6731484-6732821 REVERSE LENGTH=196;; (*ITAG) Solyc03g094030.2.1 (e_value=3e-105) genomic_reference:SL2.40ch03 gene_region:49198686-49200370 transcript_region:SL2.40ch03:49198686..49200370- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 31 (AHRD V1 *-*- D0MR26_PHYIN); contains Interpro domain(s) IPR008831 Mediator complex, subunit Med31 "; GO:0016592 NbS00003019g0006.1 protein AED:0.20 eAED:0.20 QI:204|0.85|0.62|1|0.57|0.62|8|0|435; (*SWP) sp|Q6N075|MFSD5_HUMAN (e_value=1e-46) Major facilitator superfamily domain-containing protein 5 OS=Homo sapiens GN=MFSD5 PE=2 SV=2;; (*TAIR) AT1G64650.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:24023805-24026336 REVERSE LENGTH=462;; (*ITAG) Solyc08g066750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52771035-52775069 transcript_region:SL2.40ch08:52771035..52775069- functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00003019g0005.1 protein AED:0.15 eAED:0.21 QI:0|1|0|1|1|1|2|0|220; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=4e-17) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT1G64640.1 (e_value=1e-36) | Symbols: ENODL8, AtENODL8 | early nodulin-like protein 8 | chr1:24022482-24023151 REVERSE LENGTH=191;; (*ITAG) Solyc08g066740.2.1 (e_value=3e-81) genomic_reference:SL2.40ch08 gene_region:52767871-52768984 transcript_region:SL2.40ch08:52767871..52768984- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR02_SOLCI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00030351g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.66|1|0.62|0.55|9|510|483; (*TAIR) AT1G20110.1 (e_value=2e-122) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:6971554-6974578 FORWARD LENGTH=601;; (*ITAG) Solyc02g062000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28157260-28164320 transcript_region:SL2.40ch02:28157260..28164320- go_terms:GO:0005515,GO:0035091 functional_description:"RUN and FYVE domain-containing protein 1 (AHRD V1 *--- B0WS48_CULQU); contains Interpro domain(s) IPR000306 Zinc finger, FYVE-type "; GO:0005515,GO:0035091 NbS00030351g0013.1 protein AED:0.28 eAED:0.34 QI:0|0.25|0.2|0.8|0|0|5|0|193; (*SWP) sp|Q949R4|DIOXL_ARATH (e_value=4e-70) 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1;; (*TAIR) AT4G15093.1 (e_value=3e-71) | Symbols: | catalytic LigB subunit of aromatic ring-opening dioxygenase family | chr4:8618454-8619472 FORWARD LENGTH=269;; (*ITAG) Solyc11g072550.1.1 (e_value=4e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52818309-52821064 transcript_region:SL2.40ch11:52818309..52821064+ go_terms:GO:0006725,GO:0055114 functional_description:"Extradiol ring-cleavage dioxygenase class III protein subunit B (AHRD V1 ***- B8GF38_METPE); contains Interpro domain(s) IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type "; GO:0006725,GO:0055114 NbS00030351g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.66|1|1|1|3|0|252; (*SWP) sp|Q5XF11|FB248_ARATH (e_value=1e-69) F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1;; (*TAIR) AT4G35930.1 (e_value=7e-71) | Symbols: | F-box family protein | chr4:17019482-17020744 FORWARD LENGTH=321;; (*ITAG) Solyc03g033390.2.1 (e_value=1e-125) genomic_reference:SL2.40ch03 gene_region:9242801-9245006 transcript_region:SL2.40ch03:9242801..9245006+ functional_description:"F-box family protein (AHRD V1 *-*- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00053583g0010.1 protein AED:0.05 eAED:0.05 QI:346|0.5|0.33|1|1|1|3|0|74 NbS00053583g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0|1|1|1|2|0|725; (*SWP) sp|A2RRV3|PATL1_DANRE (e_value=1e-11) Protein PAT1 homolog 1 OS=Danio rerio GN=patl1 PE=1 SV=1;; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc12g006420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:903491-908840 transcript_region:SL2.40ch12:903491..908840- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00053583g0005.1 protein AED:0.33 eAED:0.41 QI:0|0.5|0.55|0.88|0.37|0.44|9|254|257; (*SWP) sp|Q54P70|Y4757_DICDI (e_value=5e-13) OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2;; (*TAIR) AT3G22260.1 (e_value=1e-87) | Symbols: | Cysteine proteinases superfamily protein | chr3:7871489-7873393 FORWARD LENGTH=240;; (*ITAG) Solyc05g016250.2.1 (e_value=7e-117) genomic_reference:SL2.40ch05 gene_region:15405287-15418394 transcript_region:SL2.40ch05:15405287..15418394- go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6U3W2_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00024303g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|1|0.75|0.6|5|329|318; (*SWP) sp|O04858|PP13_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1;; (*TAIR) AT2G39840.1 (e_value=4e-178) | Symbols: TOPP4 | type one serine/threonine protein phosphatase 4 | chr2:16627430-16628789 FORWARD LENGTH=321;; (*ITAG) Solyc06g030490.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:15529156-15536744 transcript_region:SL2.40ch06:15529156..15536744+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** D7LDT2_ARALY); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00026870g0008.1 protein AED:0.15 eAED:0.15 QI:110|0.95|0.95|1|0.81|0.82|23|413|645; (*SWP) sp|Q6YXZ7|ANM5_ORYSJ (e_value=0.0) Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. japonica GN=PRMT5 PE=2 SV=1;; (*TAIR) AT4G31120.1 (e_value=0.0) | Symbols: SKB1, ATPRMT5 | SHK1 binding protein 1 | chr4:15132185-15136568 REVERSE LENGTH=642;; (*ITAG) Solyc08g005970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:729453-748397 transcript_region:SL2.40ch08:729453..748397- go_terms:GO:0035243 functional_description:"Protein arginine N-methyltransferase (AHRD V1 **** A9T4F9_PHYPA); contains Interpro domain(s) IPR007857 Skb1 methyltransferase "; GO:0035243 NbS00026870g0005.1 protein AED:0.28 eAED:0.28 QI:257|1|1|1|0.66|0.5|4|362|195; (*TAIR) AT4G31130.1 (e_value=2e-87) | Symbols: | Protein of unknown function (DUF1218) | chr4:15137159-15138465 REVERSE LENGTH=195;; (*ITAG) Solyc08g006000.2.1 (e_value=3e-121) genomic_reference:SL2.40ch08 gene_region:763883-768964 transcript_region:SL2.40ch08:763883..768964- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00026870g0009.1 protein AED:0.07 eAED:0.13 QI:0|0|0|1|0|0|2|0|78; (*TAIR) AT1G71310.1 (e_value=2e-23) | Symbols: | cobalt ion binding | chr1:26878717-26879844 REVERSE LENGTH=176;; (*ITAG) Solyc08g005060.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:48135-51527 transcript_region:SL2.40ch08:48135..51527- go_terms:GO:0050897 functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- Q9LEH5_HORVU)"; GO:0050897 NbS00029673g0008.1 protein AED:0.21 eAED:0.21 QI:84|1|0.5|1|1|1|2|14|27 NbS00029673g0010.1 protein AED:0.25 eAED:0.26 QI:0|1|0.62|1|0.42|0.37|8|0|300; (*SWP) sp|O34524|YOCS_BACSU (e_value=2e-29) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT2G26900.1 (e_value=8e-135) | Symbols: | Sodium Bile acid symporter family | chr2:11475156-11477870 REVERSE LENGTH=409;; (*ITAG) Solyc05g017950.2.1 (e_value=3e-133) genomic_reference:SL2.40ch05 gene_region:19274632-19281191 transcript_region:SL2.40ch05:19274632..19281191- go_terms:GO:0015370 functional_description:"Bile acid sodium symporter (AHRD V1 **** B2A035_OPITP); contains Interpro domain(s) IPR004710 Bile acid transporter "; GO:0015370 NbS00029673g0006.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|1|3|0|122; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=5e-23) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT4G32551.1 (e_value=4e-24) | Symbols: LUG, RON2 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain | chr4:15707863-15713359 FORWARD LENGTH=931;; (*ITAG) Solyc05g026480.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:41470829-41477244 transcript_region:SL2.40ch05:41470829..41477244+ functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbC23187075g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|54; (*TAIR) AT3G20230.1 (e_value=1e-24) | Symbols: | Ribosomal L18p/L5e family protein | chr3:7055639-7056679 REVERSE LENGTH=187;; (*ITAG) Solyc01g088470.2.1 (e_value=3e-31) genomic_reference:SL2.40ch01 gene_region:75027075-75027747 transcript_region:SL2.40ch01:75027075..75027747+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 family (AHRD V1 ***- D7LAX4_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbC24507084g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|83 NbS00019210g0012.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.85|0.75|8|40|529; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=6e-169) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=4e-170) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc01g109530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88214662-88219013 transcript_region:SL2.40ch01:88214662..88219013+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00019210g0011.1 protein AED:0.26 eAED:0.27 QI:0|0.66|0.57|1|1|0.85|7|0|977; (*SWP) sp|Q8VY05|SWI3D_ARATH (e_value=6e-173) SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3;; (*TAIR) AT4G34430.4 (e_value=6e-175) | Symbols: CHB3, ATSWI3D | DNA-binding family protein | chr4:16461069-16464993 FORWARD LENGTH=986;; (*ITAG) Solyc01g109510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88199066-88208942 transcript_region:SL2.40ch01:88199066..88208942+ go_terms:GO:0003677,GO:0008270 functional_description:"Subunit of the SWI/SNF chromatin remodeling complex (AHRD V1 *-*- C4QY27_PICPG); contains Interpro domain(s) IPR007526 SWIRM "; GO:0003677,GO:0008270 NbS00019210g0010.1 protein AED:0.39 eAED:0.45 QI:0|0.5|0.28|1|0.33|0.71|7|0|218; (*SWP) sp|Q9LS94|RAG3F_ARATH (e_value=6e-124) Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2 SV=1;; (*TAIR) AT3G18820.1 (e_value=5e-125) | Symbols: ATRABG3F, ATRAB7B, RAB71, RABG3F, RAB7B | RAB GTPase homolog G3F | chr3:6484266-6486005 FORWARD LENGTH=206;; (*ITAG) Solyc01g109520.2.1 (e_value=3e-129) genomic_reference:SL2.40ch01 gene_region:88210021-88213641 transcript_region:SL2.40ch01:88210021..88213641- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR002078 RNA polymerase sigma factor 54, interaction "; GO:0003924 NbS00043428g0004.1 protein AED:0.24 eAED:0.24 QI:249|1|1|1|1|1|12|318|530; (*SWP) sp|Q66GQ3|PDI16_ARATH (e_value=0.0) Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1;; (*TAIR) AT3G16110.1 (e_value=0.0) | Symbols: ATPDIL1-6, ATPDI4, PDI4, PDIL1-6 | PDI-like 1-6 | chr3:5460955-5463666 REVERSE LENGTH=534;; (*ITAG) Solyc03g120720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63066502-63072695 transcript_region:SL2.40ch03:63066502..63072695+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-3b (AHRD V1 **** C6KXH6_SOYBN); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756 NbC25375173g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|168; (*TAIR) AT5G64260.1 (e_value=1e-93) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc01g105410.2.1 (e_value=1e-117) genomic_reference:SL2.40ch01 gene_region:85348461-85349698 transcript_region:SL2.40ch01:85348461..85349698+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00011635g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|100; (*SWP) sp|Q8RU61|ATPH_ATRBE (e_value=2e-23) ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1;; (*ITAG) ATCG00140.1 (e_value=1e-23) | Symbols: ATPH | ATP synthase subunit C family protein | chrC:13262-13507 REVERSE LENGTH=81;; (*ITAG) Solyc09g059660.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50625242-50625487 transcript_region:SL2.40ch09:50625242..50625487- go_terms:GO:0033177,GO:0045263 functional_description:"ATP synthase subunit c chloroplastic (AHRD V1 *-*- D3WCY5_XIMAM); contains Interpro domain(s) IPR005953 ATPase, F0 complex, subunit C, bacterial and chloroplast "; GO:0033177,GO:0045263 NbS00011635g0007.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|130; (*ITAG) Solyc00g019990.1.1 (e_value=2e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:11804753-11804968 transcript_region:SL2.40ch00:11804753..11804968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011635g0004.1 protein AED:0.57 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|170; (*TAIR) AT1G55340.2 (e_value=4e-41) | Symbols: | Protein of unknown function (DUF1639) | chr1:20652605-20653469 FORWARD LENGTH=195;; (*ITAG) Solyc01g005580.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:406975-409234 transcript_region:SL2.40ch01:406975..409234- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00011635g0016.1 protein AED:0.32 eAED:0.32 QI:130|0.9|0.90|1|0.8|0.63|11|115|280; (*TAIR) AT3G03890.1 (e_value=2e-89) | Symbols: | FMN binding | chr3:999667-1001996 REVERSE LENGTH=321;; (*ITAG) Solyc03g063240.2.1 (e_value=9e-58) genomic_reference:SL2.40ch03 gene_region:31188554-31197693 transcript_region:SL2.40ch03:31188554..31197693- go_terms:GO:0010181 functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding protein (AHRD V1 ***- D6UPC6_9BACT); contains Interpro domain(s) IPR012349 FMN-binding split barrel "; GO:0010181 NbS00011635g0013.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|4|0|298; (*SWP) sp|P38550|RPOC2_TOBAC (e_value=4e-122) DNA-directed RNA polymerase subunit beta'' OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=2;; (*ITAG) ATCG00170.1 (e_value=6e-93) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc01g017350.1.1 (e_value=3e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23939347-23939876 transcript_region:SL2.40ch01:23939347..23939876- functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- A9XW65_CORFO)"; NbS00011635g0014.1 protein AED:0.41 eAED:0.46 QI:0|0|0|1|0|0|3|0|250; (*SWP) sp|P06355|RR2_TOBAC (e_value=2e-93) 30S ribosomal protein S2, chloroplastic OS=Nicotiana tabacum GN=rps2 PE=3 SV=1;; (*ITAG) ATCG00160.1 (e_value=3e-79) | Symbols: RPS2 | ribosomal protein S2 | chrC:15013-15723 REVERSE LENGTH=236;; (*ITAG) Solyc01g017530.1.1 (e_value=5e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23965484-23966144 transcript_region:SL2.40ch01:23965484..23966144- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S2 (AHRD V1 ***- RS2_NOSP7); contains Interpro domain(s) IPR005706 Ribosomal protein S2, bacterial-type "; GO:0005840,GO:0015935 NbS00011635g0012.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|3|0|124; (*SWP) sp|A0ZZ23|ATPI_GOSBA (e_value=5e-44) ATP synthase subunit a, chloroplastic OS=Gossypium barbadense GN=atpI PE=3 SV=1;; (*ITAG) ATCG00150.1 (e_value=7e-44) | Symbols: ATPI | ATPase, F0 complex, subunit A protein | chrC:14021-14770 REVERSE LENGTH=249;; (*ITAG) Solyc10g044560.1.1 (e_value=8e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22280180-22280758 transcript_region:SL2.40ch10:22280180..22280758- go_terms:GO:0046933,GO:0016820 functional_description:"ATP synthase subunit a chloroplastic (AHRD V1 **** D3WAR6_AUCJA); contains Interpro domain(s) IPR000568 ATPase, F0 complex, subunit A "; GO:0046933,GO:0016820 NbS00038512g0005.1 protein AED:0.27 eAED:0.27 QI:130|1|1|1|0.9|1|11|933|361; (*SWP) sp|Q5T280|CI114_HUMAN (e_value=1e-90) Uncharacterized protein C9orf114 OS=Homo sapiens GN=C9orf114 PE=1 SV=3;; (*TAIR) AT5G19300.1 (e_value=7e-158) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH=398;; (*ITAG) Solyc01g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71327058-71334838 transcript_region:SL2.40ch01:71327058..71334838- functional_description:"Uncharacterized conserved protein (AHRD V1 **-- Q2U4H5_ASPOR); contains Interpro domain(s) IPR003750 Protein of unknown function DUF171 "; NbS00059035g0005.1 protein AED:0.14 eAED:0.11 QI:214|0.8|0.66|1|1|1|6|351|299; (*TAIR) AT3G26670.3 (e_value=7e-70) | Symbols: | Protein of unknown function (DUF803) | chr3:9798236-9800562 REVERSE LENGTH=441;; (*ITAG) Solyc01g086730.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:73445060-73446574 transcript_region:SL2.40ch01:73445060..73446574+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- Q4WRL6_ASPFU); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00002389g0013.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.25|1|1|1|4|0|314; (*SWP) sp|Q8H3C9|ILL7_ORYSJ (e_value=6e-130) IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=3e-117) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc01g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:337908-340586 transcript_region:SL2.40ch01:337908..340586- go_terms:GO:0016787,GO:0008152 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 ***- B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0016787,GO:0008152 NbS00002389g0014.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|0.5|1|1|2|114|383; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-74) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=1e-65) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc01g005500.2.1 (e_value=2e-157) genomic_reference:SL2.40ch01 gene_region:344855-346514 transcript_region:SL2.40ch01:344855..346514+ go_terms:GO:0008152,GO:0055114 functional_description:"3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase (AHRD V1 *-*- HCAB_SHIFL); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00002389g0015.1 protein AED:0.28 eAED:0.30 QI:0|0.33|0.25|1|0.33|0|4|424|396; (*SWP) sp|Q9LT84|U496M_ARATH (e_value=1e-69) UPF0496 protein At3g19330 OS=Arabidopsis thaliana GN=At3g19330 PE=2 SV=2;; (*TAIR) AT3G19330.1 (e_value=8e-71) | Symbols: | Protein of unknown function (DUF677) | chr3:6699423-6700772 FORWARD LENGTH=382;; (*ITAG) Solyc01g005480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:333096-336980 transcript_region:SL2.40ch01:333096..336980+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00010158g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.33|1|1|3|0|138; (*ITAG) Solyc12g010430.1.1 (e_value=4e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:3464007-3464420 transcript_region:SL2.40ch12:3464007..3464420- functional_description:"Unknown Protein (AHRD V1)"; NbS00047792g0004.1 protein AED:0.25 eAED:0.25 QI:92|0.66|0.57|0.85|0.66|0.57|7|0|130; (*SWP) sp|Q54FA8|RPAB2_DICDI (e_value=8e-27) DNA-directed RNA polymerases I, II, and III subunit rpabc2 OS=Dictyostelium discoideum GN=polr2f PE=3 SV=1;; (*TAIR) AT2G04630.1 (e_value=6e-40) | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 | chr2:1619168-1620246 REVERSE LENGTH=144;; (*ITAG) Solyc09g010500.2.1 (e_value=2e-40) genomic_reference:SL2.40ch09 gene_region:3879837-3882611 transcript_region:SL2.40ch09:3879837..3882611+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit-like protein (AHRD V1 **** Q9FJ98_ARATH); contains Interpro domain(s) IPR006111 DNA-directed RNA polymerase, 14 to 18 kDa subunit "; GO:0003899 NbS00055335g0003.1 protein AED:0.18 eAED:0.18 QI:269|1|1|1|1|1|9|291|370; (*TAIR) AT4G17840.1 (e_value=3e-161) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9918222-9920190 REVERSE LENGTH=422;; (*ITAG) Solyc08g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:12370-18668 transcript_region:SL2.40ch08:12370..18668- functional_description:"Unknown Protein (AHRD V1)"; NbS00048236g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.71|0.5|0.87|1|1|8|295|388; (*TAIR) AT2G46420.1 (e_value=3e-176) | Symbols: | Plant protein 1589 of unknown function | chr2:19054891-19056830 FORWARD LENGTH=363;; (*ITAG) Solyc05g007270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1930337-1935562 transcript_region:SL2.40ch05:1930337..1935562- functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 ***- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00059949g0004.1 protein AED:0.02 eAED:0.02 QI:262|1|1|1|0.66|0.75|4|307|433; (*SWP) sp|Q93ZD7|MRS24_ARATH (e_value=2e-174) Magnesium transporter MRS2-4 OS=Arabidopsis thaliana GN=MRS2-4 PE=1 SV=1;; (*TAIR) AT3G58970.1 (e_value=2e-175) | Symbols: MGT6, MRS2-4 | magnesium transporter 6 | chr3:21789659-21791163 REVERSE LENGTH=436;; (*ITAG) Solyc01g103890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84151906-84158425 transcript_region:SL2.40ch01:84151906..84158425- go_terms:GO:0015095 functional_description:"Magnesium transporter MRS2-4 (AHRD V1 **** MRS24_ARATH); contains Interpro domain(s) IPR002523 Mg2+ transporter protein, CorA-like "; GO:0015095 NbS00043029g0003.1 protein AED:0.08 eAED:0.08 QI:38|1|1|1|1|1|2|269|475; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=4e-152) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21760.1 (e_value=1e-135) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc09g098080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67257042-67260009 transcript_region:SL2.40ch09:67257042..67260009+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbC25952682g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.66|0|0|3|0|151; (*SWP) sp|Q9M1K1|ORG2_ARATH (e_value=5e-21) Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1;; (*TAIR) AT3G56970.1 (e_value=4e-22) | Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253;; (*ITAG) Solyc10g079680.1.1 (e_value=3e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:60501972-60503972 transcript_region:SL2.40ch10:60501972..60503972+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00034848g0005.1 protein AED:0.78 eAED:0.78 QI:0|0|0.25|0.25|0|0.25|4|0|136 NbS00034848g0006.1 protein AED:0.19 eAED:0.19 QI:226|1|1|1|1|1|7|334|463; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=1e-38) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT1G73480.1 (e_value=6e-176) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27629266-27632486 FORWARD LENGTH=463;; (*ITAG) Solyc03g098020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00012770g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|509; (*SWP) sp|Q8VZ80|PLT5_ARATH (e_value=2e-165) Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2;; (*TAIR) AT3G18830.1 (e_value=1e-166) | Symbols: ATPLT5, PMT5, ATPMT5 | polyol/monosaccharide transporter 5 | chr3:6489000-6491209 REVERSE LENGTH=539;; (*ITAG) Solyc07g024030.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23997748-23999260 transcript_region:SL2.40ch07:23997748..23999260+ go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 2 (AHRD V1 ***- GTR2_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519 NbS00012770g0006.1 protein AED:0.11 eAED:0.17 QI:0|0.5|0|0.8|1|1|5|0|707; (*SWP) sp|Q80TM9|NISCH_MOUSE (e_value=3e-11) Nischarin OS=Mus musculus GN=Nisch PE=1 SV=2;; (*TAIR) AT1G78230.1 (e_value=4e-127) | Symbols: | Outer arm dynein light chain 1 protein | chr1:29430226-29432516 FORWARD LENGTH=681;; (*ITAG) Solyc04g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57863338-57865996 transcript_region:SL2.40ch04:57863338..57865996+ go_terms:GO:0005515 functional_description:"Phosphatase 1 regulatory subunit 7 (AHRD V1 *--- C1C4C3_RANCA); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00003754g0002.1 protein AED:0.28 eAED:0.28 QI:449|0.83|0.71|1|0.33|0.42|7|646|221; (*SWP) sp|Q8LA53|MBD2_ARATH (e_value=2e-57) Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=MBD2 PE=1 SV=1;; (*TAIR) AT5G35330.3 (e_value=2e-58) | Symbols: MBD02 | methyl-CPG-binding domain protein 02 | chr5:13523725-13525270 REVERSE LENGTH=272;; (*ITAG) Solyc05g047450.1.1 (e_value=2e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:58041156-58047725 transcript_region:SL2.40ch05:58041156..58047725+ go_terms:GO:0051747 functional_description:"Methyl binding domain protein (AHRD V1 ***- B9N851_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0051747 NbS00003754g0013.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|0|0.5|2|321|102; (*TAIR) AT2G31490.1 (e_value=8e-30) | Symbols: | unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13412060-13413002 FORWARD LENGTH=71;; (*ITAG) Solyc05g046390.2.1 (e_value=4e-34) genomic_reference:SL2.40ch05 gene_region:57965282-57966565 transcript_region:SL2.40ch05:57965282..57966565- functional_description:"Unknown Protein (AHRD V1)"; NbS00003754g0017.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.8|0.5|0.6|5|0|546; (*SWP) sp|Q9K9K5|SPEA_BACHD (e_value=3e-73) Arginine decarboxylase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=speA PE=3 SV=1;; (*ITAG) Solyc07g015980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6057700-6060363 transcript_region:SL2.40ch07:6057700..6060363- go_terms:GO:0008923 functional_description:"Lysine decarboxylase (AHRD V1 **** A0YN82_LYNSP); contains Interpro domain(s) IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 "; GO:0008923 NbS00003754g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|77; (*SWP) sp|O82067|TOM7A_SOLTU (e_value=4e-28) Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3;; (*TAIR) AT5G41685.1 (e_value=2e-20) | Symbols: | Mitochondrial outer membrane translocase complex, subunit Tom7 | chr5:16669419-16669646 REVERSE LENGTH=75;; (*ITAG) Solyc07g015970.1.1 (e_value=2e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:6053600-6053818 transcript_region:SL2.40ch07:6053600..6053818+ go_terms:GO:0005741 functional_description:"Mitochondrial import receptor subunit TOM7-1 (AHRD V1 ***- B6SJR3_MAIZE); contains Interpro domain(s) IPR012621 Mitochondrial outer membrane translocase complex, subunitt Tom7 "; GO:0005741 NbS00028926g0002.1 protein AED:0.22 eAED:0.22 QI:90|1|0.66|1|1|1|3|475|92; (*TAIR) AT1G28395.5 (e_value=1e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). | chr1:9969580-9971433 REVERSE LENGTH=91;; (*ITAG) Solyc03g006310.2.1 (e_value=6e-37) genomic_reference:SL2.40ch03 gene_region:909634-914330 transcript_region:SL2.40ch03:909634..914330+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013010g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|106; (*SWP) sp|P52837|F4ST_FLACH (e_value=4e-27) Flavonol 4'-sulfotransferase OS=Flaveria chlorifolia PE=1 SV=1;; (*TAIR) AT4G26280.1 (e_value=4e-20) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13304721-13305722 REVERSE LENGTH=314;; (*ITAG) Solyc09g055500.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:36872367-36873365 transcript_region:SL2.40ch09:36872367..36873365+ go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7LZW5_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00013010g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|95; (*TAIR) AT3G03150.1 (e_value=3e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727733-729357 REVERSE LENGTH=121;; (*ITAG) Solyc03g096840.2.1 (e_value=9e-52) genomic_reference:SL2.40ch03 gene_region:52656957-52659784 transcript_region:SL2.40ch03:52656957..52659784- functional_description:"Seed specific protein Bn15D1B (AHRD V1 ***- B6TIB8_MAIZE)"; NbS00013010g0001.1 protein AED:0.04 eAED:0.05 QI:226|0.4|0.66|1|0.8|0.66|6|960|1464; (*SWP) sp|Q5G1S8|PP241_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2;; (*TAIR) AT3G18110.1 (e_value=0.0) | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:6204940-6209691 REVERSE LENGTH=1440;; (*ITAG) Solyc03g096830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52640192-52646159 transcript_region:SL2.40ch03:52640192..52646159- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013010g0018.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0|0|4|0|221; (*TAIR) AT3G22810.1 (e_value=1e-11) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr3:8068595-8071559 FORWARD LENGTH=472;; (*ITAG) Solyc06g072940.1.1 (e_value=7e-76) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41350630-41352642 transcript_region:SL2.40ch06:41350630..41352642+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; NbS00013010g0005.1 protein AED:0.30 eAED:0.31 QI:0|0.66|0.42|1|1|1|7|0|576; (*SWP) sp|Q9C6L8|ALMT4_ARATH (e_value=0.0) Aluminum-activated malate transporter 4 OS=Arabidopsis thaliana GN=ALMT4 PE=3 SV=1;; (*TAIR) AT1G25480.1 (e_value=0.0) | Symbols: | Aluminium activated malate transporter family protein | chr1:8948467-8950876 FORWARD LENGTH=548;; (*ITAG) Solyc03g096820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52622191-52628259 transcript_region:SL2.40ch03:52622191..52628259- go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00013010g0016.1 protein AED:0.10 eAED:0.18 QI:0|0|0|1|0|0|2|0|84; (*ITAG) Solyc01g100460.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:82243649-82244921 transcript_region:SL2.40ch01:82243649..82244921+ go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **** C0LQL1_9CARY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00041207g0006.1 protein AED:0.30 eAED:0.33 QI:0|0.75|0.55|1|0.75|0.88|9|0|265; (*SWP) sp|P53800|FDFT_NICBE (e_value=1e-165) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=5e-127) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc01g110290.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:88779362-88786983 transcript_region:SL2.40ch01:88779362..88786983+ go_terms:GO:0005515,GO:0004310 functional_description:"Squalene synthase (AHRD V1 ***- D0VFU8_SOLLC); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0005515,GO:0004310 NbS00041207g0007.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|0.83|6|0|230; (*TAIR) AT4G34660.2 (e_value=7e-121) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=345;; (*ITAG) Solyc01g110300.2.1 (e_value=1e-140) genomic_reference:SL2.40ch01 gene_region:88788002-88793586 transcript_region:SL2.40ch01:88788002..88793586- go_terms:GO:0030276 functional_description:"Clathrin binding protein (AHRD V1 **-* B6STF7_MAIZE); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbC25229575g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|206; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-22) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT2G26180.1 (e_value=5e-74) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416;; (*ITAG) Solyc08g062940.2.1 (e_value=3e-115) genomic_reference:SL2.40ch08 gene_region:49582645-49584764 transcript_region:SL2.40ch08:49582645..49584764+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00002355g0012.1 protein AED:0.12 eAED:0.17 QI:0|0.4|0.66|1|0.4|0.33|6|0|350; (*TAIR) AT1G10190.1 (e_value=4e-40) | Symbols: | Protein of Unknown Function (DUF239) | chr1:3343765-3345591 REVERSE LENGTH=396;; (*ITAG) Solyc07g061710.1.1 (e_value=4e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61891988-61894834 transcript_region:SL2.40ch07:61891988..61894834- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SXW9_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00002355g0002.1 protein AED:0.18 eAED:0.18 QI:0|1|0.8|1|1|1|5|0|308; (*TAIR) AT4G10220.1 (e_value=1e-46) | Symbols: | Protein of Unknown Function (DUF239) | chr4:6362189-6365079 FORWARD LENGTH=400;; (*ITAG) Solyc07g056610.1.1 (e_value=7e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61751796-61754744 transcript_region:SL2.40ch07:61751796..61754744+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00002355g0014.1 protein AED:0.41 eAED:0.41 QI:3|1|0|1|0|0|2|0|98; (*TAIR) AT2G24950.1 (e_value=1e-15) | Symbols: | Protein of Unknown Function (DUF239) | chr2:10613105-10615563 FORWARD LENGTH=411;; (*ITAG) Solyc07g056610.1.1 (e_value=9e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61751796-61754744 transcript_region:SL2.40ch07:61751796..61754744+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00002355g0015.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|108; (*SWP) sp|B0Z550|ATPA_OENGL (e_value=4e-35) ATP synthase subunit alpha, chloroplastic OS=Oenothera glazioviana GN=atpA PE=3 SV=1;; (*ITAG) ATCG00120.1 (e_value=2e-34) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00002355g0016.1 protein AED:0.63 eAED:0.63 QI:0|0|0|1|0|0|2|0|64 NbS00021726g0002.1 protein AED:0.36 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|90; (*ITAG) Solyc11g022600.1.1 (e_value=5e-25) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:14689832-14690913 transcript_region:SL2.40ch11:14689832..14690913- functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00023187g0001.1 protein AED:0.03 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|179; (*ITAG) Solyc08g007710.2.1 (e_value=3e-76) genomic_reference:SL2.40ch08 gene_region:2193212-2194527 transcript_region:SL2.40ch08:2193212..2194527- functional_description:"Unknown Protein (AHRD V1)"; NbS00040725g0003.1 protein AED:0.00 eAED:0.00 QI:110|1|1|1|0.5|0.66|3|203|191 NbS00028196g0007.1 protein AED:0.04 eAED:0.05 QI:0|1|0.75|1|1|1|8|0|235; (*SWP) sp|Q96JG6|CC132_HUMAN (e_value=4e-31) Coiled-coil domain-containing protein 132 OS=Homo sapiens GN=CCDC132 PE=1 SV=3;; (*TAIR) AT2G27900.2 (e_value=1e-131) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:11877654-11885238 FORWARD LENGTH=1124;; (*ITAG) Solyc11g066540.1.1 (e_value=1e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49371597-49377963 transcript_region:SL2.40ch11:49371597..49377963- functional_description:"Coiled-coil domain-containing protein 132 (AHRD V1 **-- CC132_HUMAN); contains Interpro domain(s) IPR019514 Protein of unknown function DUF2451, C-terminal "; NbS00028196g0002.1 protein AED:0.19 eAED:0.19 QI:274|0.9|0.90|1|0.9|0.81|11|615|369; (*SWP) sp|Q67Y83|SCP51_ARATH (e_value=2e-104) Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2;; (*TAIR) AT2G27920.1 (e_value=1e-105) | Symbols: SCPL51 | serine carboxypeptidase-like 51 | chr2:11885777-11889043 REVERSE LENGTH=461;; (*ITAG) Solyc11g066520.1.1 (e_value=2e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49360646-49367018 transcript_region:SL2.40ch11:49360646..49367018+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase family protein expressed (AHRD V1 ***- Q10K92_ORYSJ); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00060053g0003.1 protein AED:0.01 eAED:0.01 QI:31|1|1|1|1|1|2|300|227; (*SWP) sp|P33050|PSC13_MAIZE (e_value=4e-34) Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1;; (*TAIR) AT4G08685.1 (e_value=4e-46) | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159;; (*ITAG) Solyc04g054810.2.1 (e_value=2e-78) genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00019422g0001.1 protein AED:0.28 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|70; (*SWP) sp|P62981|RS27A_SOLTU (e_value=1e-35) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=1e-32) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc01g056940.2.1 (e_value=5e-37) genomic_reference:SL2.40ch01 gene_region:50504376-50505131 transcript_region:SL2.40ch01:50504376..50505131+ go_terms:GO:0005515 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005515 NbS00016714g0003.1 protein AED:0.19 eAED:0.20 QI:0|0.81|0.41|1|1|1|12|0|1768; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=0.0) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT4G38200.1 (e_value=0.0) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:17915293-17922502 FORWARD LENGTH=1687;; (*ITAG) Solyc01g112350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90197517-90206578 transcript_region:SL2.40ch01:90197517..90206578+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 *--* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00016714g0004.1 protein AED:0.36 eAED:0.34 QI:5|0.83|0.85|1|1|1|7|393|190; (*SWP) sp|Q940Y3|ARID3_ARATH (e_value=1e-55) AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1;; (*TAIR) AT2G17410.1 (e_value=9e-57) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr2:7559869-7563474 FORWARD LENGTH=786;; (*ITAG) Solyc04g082820.2.1 (e_value=3e-64) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00016714g0012.1 protein AED:0.44 eAED:0.85 QI:0|0.14|0.37|0.5|1|1|8|0|444; (*SWP) sp|Q940Y3|ARID3_ARATH (e_value=2e-21) AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=2 SV=1;; (*TAIR) AT2G17410.1 (e_value=1e-22) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr2:7559869-7563474 FORWARD LENGTH=786;; (*ITAG) Solyc04g082820.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00001540g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|77; (*SWP) sp|Q07060|ATP9_PETSP (e_value=7e-32) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=8e-26) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00004763g0015.1 protein AED:0.15 eAED:0.15 QI:121|1|1|1|0.71|0.75|8|60|263; (*SWP) sp|Q09893|YAI5_SCHPO (e_value=6e-14) Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=2 SV=1;; (*TAIR) AT3G62040.1 (e_value=1e-109) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:22975328-22976518 REVERSE LENGTH=249;; (*ITAG) Solyc01g068630.2.1 (e_value=6e-149) genomic_reference:SL2.40ch01 gene_region:70226606-70230041 transcript_region:SL2.40ch01:70226606..70230041+ go_terms:GO:0016787,GO:0008152 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 ***- D3P8R6_DEFDS); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0016787,GO:0008152 NbS00004763g0016.1 protein AED:0.15 eAED:0.16 QI:0|1|0.87|1|1|1|8|596|621; (*SWP) sp|Q6AY19|ADCK4_RAT (e_value=6e-137) Uncharacterized aarF domain-containing protein kinase 4 OS=Rattus norvegicus GN=Adck4 PE=2 SV=1;; (*TAIR) AT4G01660.1 (e_value=0.0) | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 1 | chr4:708652-711095 FORWARD LENGTH=623;; (*ITAG) Solyc01g068640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70233998-70244981 transcript_region:SL2.40ch01:70233998..70244981+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 4 (AHRD V1 **-* ADCK4_RAT); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00004763g0020.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0|0.85|0.33|0.14|7|0|287; (*TAIR) AT4G01650.2 (e_value=4e-56) | Symbols: | Polyketide cyclase / dehydrase and lipid transport protein | chr4:704578-706931 REVERSE LENGTH=211;; (*ITAG) Solyc01g068620.2.1 (e_value=2e-76) genomic_reference:SL2.40ch01 gene_region:70221049-70224411 transcript_region:SL2.40ch01:70221049..70224411+ functional_description:"Cyclase/dehydrase (AHRD V1 *-*- D7E269_NOSA0); contains Interpro domain(s) IPR005031 Streptomyces cyclase/dehydrase "; NbS00004763g0023.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.75|0|0.25|4|0|158; (*TAIR) AT3G62080.1 (e_value=1e-28) | Symbols: | SNF7 family protein | chr3:22986383-22988517 FORWARD LENGTH=423;; (*ITAG) Solyc01g079060.2.1 (e_value=4e-58) genomic_reference:SL2.40ch01 gene_region:70642329-70647075 transcript_region:SL2.40ch01:70642329..70647075+ functional_description:"Charged multivesicular body protein 7 (AHRD V1 ***- CHMP7_DANRE)"; NbS00004763g0018.1 protein AED:0.28 eAED:0.28 QI:17|0.71|0.75|0.87|0.71|0.75|8|736|263; (*SWP) sp|P43254|COP1_ARATH (e_value=3e-12) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT1G17330.1 (e_value=7e-104) | Symbols: | Metal-dependent phosphohydrolase | chr1:5929966-5931595 FORWARD LENGTH=222;; (*ITAG) Solyc02g014720.2.1 (e_value=2e-126) genomic_reference:SL2.40ch02 gene_region:9171367-9179385 transcript_region:SL2.40ch02:9171367..9179385+ go_terms:GO:0003824 functional_description:"Hydrolase (AHRD V1 **-- C2GZY6_ENTFA); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00004763g0025.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0.66|0.5|4|0|367; (*ITAG) Solyc01g094420.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00004763g0027.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.8|0.5|0.6|5|0|221; (*ITAG) Solyc08g048470.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004763g0026.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.33|0.5|0.66|3|0|178 NbS00014383g0017.1 protein AED:0.17 eAED:0.17 QI:0|0.25|0.2|0.8|0.5|0.8|5|0|507; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=0.0) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=0.0) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00014383g0003.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|1|1|3|0|519; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=0.0) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=0.0) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00014383g0015.1 protein AED:0.35 eAED:0.36 QI:0|0.66|0.25|1|0.33|0.5|4|0|191; (*SWP) sp|Q01588|RFA1_XENLA (e_value=3e-13) Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1;; (*TAIR) AT5G08020.1 (e_value=4e-22) | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604;; (*ITAG) Solyc07g032800.1.1 (e_value=1e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00014383g0016.1 protein AED:0.38 eAED:0.38 QI:0|0.25|0|1|0.25|0.4|5|0|205; (*ITAG) Solyc10g049480.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00014383g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|94 NbS00013943g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.33|1|1|1|3|0|91; (*SWP) sp|P31583|RHN1_NICPL (e_value=1e-43) Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1;; (*TAIR) AT5G45130.1 (e_value=3e-42) | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200;; (*ITAG) Solyc02g036450.2.1 (e_value=7e-44) genomic_reference:SL2.40ch02 gene_region:21496239-21501862 transcript_region:SL2.40ch02:21496239..21501862- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00013943g0001.1 protein AED:0.18 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|85; (*ITAG) Solyc11g056510.1.1 (e_value=5e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013943g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|1|1|3|893|367; (*SWP) sp|Q9STX0|WRKY7_ARATH (e_value=2e-80) Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1;; (*TAIR) AT4G24240.1 (e_value=2e-81) | Symbols: WRKY7, ATWRKY7 | WRKY DNA-binding protein 7 | chr4:12571930-12573446 FORWARD LENGTH=353;; (*ITAG) Solyc04g078550.2.1 (e_value=3e-154) genomic_reference:SL2.40ch04 gene_region:60852591-60854416 transcript_region:SL2.40ch04:60852591..60854416+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 2 (AHRD V1 ***- A7UGC9_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00053617g0009.1 protein AED:0.24 eAED:0.27 QI:30|0.6|0.45|0.90|0.7|0.63|11|0|1338; (*TAIR) AT1G64570.1 (e_value=2e-107) | Symbols: DUO3 | Homeodomain-like superfamily protein | chr1:23978868-23983925 FORWARD LENGTH=1239;; (*ITAG) Solyc06g072270.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40940777-40951100 transcript_region:SL2.40ch06:40940777..40951100- go_terms:GO:0008270 functional_description:"RING finger protein 24 (AHRD V1 *--- RNF24_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00021303g0013.1 protein AED:0.01 eAED:0.01 QI:82|1|1|1|0.75|0.6|5|163|499; (*SWP) sp|Q94CD8|E134_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1;; (*TAIR) AT3G13560.2 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:4425484-4427284 REVERSE LENGTH=505;; (*ITAG) Solyc04g007910.2.1 (e_value=5e-152) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00021303g0012.1 protein AED:0.04 eAED:0.04 QI:131|1|1|1|1|1|4|572|176; (*SWP) sp|Q9LJD7|COP10_ARATH (e_value=1e-83) Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1;; (*TAIR) AT3G13550.1 (e_value=1e-84) | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating enzyme family protein | chr3:4423569-4424797 REVERSE LENGTH=182;; (*ITAG) Solyc01g005840.2.1 (e_value=3e-99) genomic_reference:SL2.40ch01 gene_region:571846-574849 transcript_region:SL2.40ch01:571846..574849+ go_terms:GO:0042296,GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 E3 (AHRD V1 **** B6T544_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0042296,GO:0004842 NbS00021303g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|322; (*ITAG) Solyc03g082770.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46188149-46189117 transcript_region:SL2.40ch03:46188149..46189117- go_terms:GO:0009664 functional_description:"Extensin-like protein Dif10 (Fragment) (AHRD V1 *-*- Q43504_SOLLC); contains Interpro domain(s) IPR006706 Extensin-like region "; GO:0009664 NbS00021303g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|131; (*ITAG) Solyc07g041740.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00058551g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|96; (*TAIR) AT1G65900.1 (e_value=8e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to 306 proteins in 119 species: Archae - 19; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24516023-24518325 REVERSE LENGTH=408;; (*ITAG) Solyc02g081270.2.1 (e_value=6e-22) genomic_reference:SL2.40ch02 gene_region:39877970-39887403 transcript_region:SL2.40ch02:39877970..39887403+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00008726g0010.1 protein AED:0.06 eAED:0.11 QI:0|0.5|0.2|1|0.5|0.8|5|0|826; (*SWP) sp|Q9LJN4|BXL5_ARATH (e_value=0.0) Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2;; (*TAIR) AT3G19620.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr3:6815613-6818308 REVERSE LENGTH=781;; (*ITAG) Solyc10g047030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34703285-34707424 transcript_region:SL2.40ch10:34703285..34707424+ go_terms:GO:0009044,GO:0005515 functional_description:"Beta-xylosidase 4 (AHRD V1 **** D7MRV5_ARALY); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0005515 NbS00008726g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|81 NbS00008726g0009.1 protein AED:0.14 eAED:0.15 QI:0|0|0|0.66|0|0|3|0|93; (*TAIR) AT4G19420.1 (e_value=6e-25) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075030.2.1 (e_value=6e-33) genomic_reference:SL2.40ch08 gene_region:56353726-56357296 transcript_region:SL2.40ch08:56353726..56357296- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00016152g0006.1 protein AED:0.31 eAED:0.34 QI:0|1|0.25|1|1|1|4|0|399; (*TAIR) AT1G36990.1 (e_value=2e-41) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581;; (*ITAG) Solyc11g013760.1.1 (e_value=1e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7141588-7146007 transcript_region:SL2.40ch11:7141588..7146007+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016152g0005.1 protein AED:0.37 eAED:0.39 QI:0|1|0.5|1|1|1|2|0|266; (*TAIR) AT1G36990.1 (e_value=1e-42) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581;; (*ITAG) Solyc11g013760.1.1 (e_value=1e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7141588-7146007 transcript_region:SL2.40ch11:7141588..7146007+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000499g0005.1 protein AED:0.09 eAED:0.09 QI:301|1|1|1|1|1|17|295|808; (*SWP) sp|Q9SJ20|RIR1_ARATH (e_value=0.0) Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1;; (*TAIR) AT2G21790.1 (e_value=0.0) | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide reductase 1 | chr2:9293529-9297580 FORWARD LENGTH=816;; (*ITAG) Solyc04g012060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4384505-4390777 transcript_region:SL2.40ch04:4384505..4390777- go_terms:GO:0005515,GO:0016959 functional_description:"Ribonucleoside-diphosphate reductase (AHRD V1 **** Q9ZR56_TOBAC); contains Interpro domain(s) IPR013346 Ribonucleoside-diphosphate reductase, alpha subunit "; GO:0005515,GO:0016959 NbS00014757g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0|0.66|1|1|3|0|182; (*TAIR) AT5G05570.2 (e_value=3e-24) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc06g051390.2.1 (e_value=4e-76) genomic_reference:SL2.40ch06 gene_region:31221832-31228128 transcript_region:SL2.40ch06:31221832..31228128+ go_terms:GO:0000166 functional_description:"Tomosyn-like protein (AHRD V1 **-- A9RPV0_PHYPA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00014757g0108.1 protein AED:0.16 eAED:0.16 QI:758|1|0.66|1|0.5|0.66|3|251|104 NbS00014757g0109.1 protein AED:0.48 eAED:0.63 QI:0|0|0|1|1|0.5|2|0|80 NbS00014757g0110.1 protein AED:0.27 eAED:0.69 QI:32|0|0|1|0|0|3|0|85 NbS00014757g0107.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|0|0|2|0|35 NbS00006998g0017.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.83|1|1|6|0|399; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=2e-81) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=1e-82) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc04g079830.2.1 (e_value=8e-144) genomic_reference:SL2.40ch04 gene_region:61729325-61740234 transcript_region:SL2.40ch04:61729325..61740234- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 *--- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00006998g0019.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|182; (*ITAG) Solyc05g045730.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00006998g0030.1 protein AED:0.30 eAED:0.30 QI:280|0.57|0.62|0.87|0.28|0.37|8|66|281; (*SWP) sp|Q5EAF2|IP5PB_ARATH (e_value=1e-92) Type I inositol 1,4,5-trisphosphate 5-phosphatase 11 OS=Arabidopsis thaliana GN=At1g47510 PE=2 SV=1;; (*TAIR) AT1G47510.1 (e_value=1e-93) | Symbols: AT5PTASE11, 5PTASE11 | inositol polyphosphate 5-phosphatase 11 | chr1:17435991-17438296 REVERSE LENGTH=334;; (*ITAG) Solyc04g079820.2.1 (e_value=1e-152) genomic_reference:SL2.40ch04 gene_region:61722723-61726819 transcript_region:SL2.40ch04:61722723..61726819+ go_terms:GO:0004437 functional_description:"Inositol 5-phosphatase 4 (AHRD V1 ***- Q8I7P3_DICDI); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00006998g0034.1 protein AED:0.34 eAED:0.34 QI:414|0|0.33|1|0|0|3|0|132 NbS00006998g0012.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|239; (*ITAG) Solyc00g181250.2.1 (e_value=1e-45) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006998g0033.1 protein AED:0.78 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|102 NbS00006998g0032.1 protein AED:0.47 eAED:0.69 QI:0|0|0|0.75|0|0|4|0|253 NbS00022381g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|243; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=8e-56) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=6e-57) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc06g066540.1.1 (e_value=2e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38187500-38188078 transcript_region:SL2.40ch06:38187500..38188078- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00004086g0010.1 protein AED:0.22 eAED:0.22 QI:1131|0.25|0.6|1|0.25|0.6|5|683|112 NbS00004086g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.88|0.88|0.5|0.66|9|298|607; (*SWP) sp|Q8VYY5|NCRK_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase NCRK OS=Arabidopsis thaliana GN=NCRK PE=1 SV=1;; (*TAIR) AT2G28250.2 (e_value=0.0) | Symbols: NCRK | Protein kinase superfamily protein | chr2:12044004-12046339 FORWARD LENGTH=565;; (*ITAG) Solyc11g069590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51305442-51307901 transcript_region:SL2.40ch11:51305442..51307901- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00004086g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.5|1|0.8|0.83|6|0|714; (*SWP) sp|Q9SL29|CNG15_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1;; (*TAIR) AT2G28260.1 (e_value=0.0) | Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678;; (*ITAG) Solyc11g069580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51293074-51297223 transcript_region:SL2.40ch11:51293074..51297223- go_terms:GO:0016020 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0016020 NbS00018183g0007.1 protein AED:0.11 eAED:0.11 QI:1126|0.75|0.8|1|1|1|5|53|265; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=5e-20) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G75170.2 (e_value=2e-118) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:28214405-28215686 FORWARD LENGTH=296;; (*ITAG) Solyc04g080290.2.1 (e_value=6e-142) genomic_reference:SL2.40ch04 gene_region:62123183-62125819 transcript_region:SL2.40ch04:62123183..62125819+ go_terms:GO:0008526 functional_description:"CRAL/TRIO domain containing protein expressed (AHRD V1 **-- Q75GU9_ORYSJ); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00018183g0008.1 protein AED:0.07 eAED:0.07 QI:52|0.5|0.33|1|0.5|0.33|3|0|319; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=6e-51) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G75180.3 (e_value=2e-116) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:28216150-28217911 REVERSE LENGTH=315;; (*ITAG) Solyc12g089140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62695311-62698109 transcript_region:SL2.40ch12:62695311..62698109- functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00012980g0009.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|0.5|0.66|3|0|179; (*ITAG) Solyc01g059760.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00012980g0011.1 protein AED:0.95 eAED:1.00 QI:0|0|0|0.25|0.66|0.75|4|0|100 NbS00012980g0010.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|83 NbS00020569g0015.1 protein AED:0.05 eAED:0.05 QI:621|1|1|1|1|1|2|305|280; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-22) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G38090.1 (e_value=6e-80) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc05g052610.2.1 (e_value=4e-106) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00020569g0013.1 protein AED:0.15 eAED:0.15 QI:301|1|0.87|1|1|1|8|0|394; (*SWP) sp|O20252|S17P_SPIOL (e_value=0.0) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G55800.1 (e_value=0.0) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00020569g0020.1 protein AED:0.15 eAED:0.19 QI:0|0.4|0.16|1|0.4|0.5|6|0|439; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g076830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59123721-59126117 transcript_region:SL2.40ch10:59123721..59126117- go_terms:GO:0048046,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00020569g0022.1 protein AED:0.55 eAED:0.58 QI:0|0|0|0.75|0.33|0.5|4|0|234; (*ITAG) Solyc01g034030.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:35725251-35725619 transcript_region:SL2.40ch01:35725251..35725619- functional_description:"Unknown Protein (AHRD V1)"; NbS00020569g0019.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|84; (*SWP) sp|Q0IQU1|LAC22_ORYSJ (e_value=7e-21) Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=2e-19) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g085090.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63726967-63730319 transcript_region:SL2.40ch10:63726967..63730319+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00020568g0005.1 protein AED:0.36 eAED:0.59 QI:0|0|0|1|1|0.5|2|0|122; (*SWP) sp|Q8LJJ9|STAD1_ORYSJ (e_value=2e-23) Acyl-[acyl-carrier-protein] desaturase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0880800 PE=2 SV=1;; (*TAIR) AT1G43800.1 (e_value=2e-23) | Symbols: | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr1:16577662-16579549 FORWARD LENGTH=391;; (*ITAG) Solyc06g059720.2.1 (e_value=1e-30) genomic_reference:SL2.40ch06 gene_region:33971878-33973270 transcript_region:SL2.40ch06:33971878..33973270- go_terms:GO:0004768 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** Q8LA10_ARATH); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768 NbS00020080g0001.1 protein AED:0.03 eAED:0.03 QI:695|0.88|0.9|1|0.77|0.7|10|142|493; (*SWP) sp|Q43117|KPYA_RICCO (e_value=0.0) Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT3G22960.1 (e_value=0.0) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc01g106780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86310720-86314473 transcript_region:SL2.40ch01:86310720..86314473+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9GIN5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00020080g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.91|0.76|0.92|0.83|0.76|13|33|474; (*SWP) sp|Q9FR53|TOR_ARATH (e_value=0.0) Serine/threonine-protein kinase TOR OS=Arabidopsis thaliana GN=TOR PE=1 SV=1;; (*TAIR) AT1G50030.2 (e_value=0.0) | Symbols: TOR | target of rapamycin | chr1:18522626-18539619 REVERSE LENGTH=2454;; (*ITAG) Solyc01g106770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00008011g0007.1 protein AED:0.07 eAED:0.07 QI:79|0.81|0.91|1|1|1|12|319|532; (*SWP) sp|Q9LIH9|RH51_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana GN=RH51 PE=2 SV=1;; (*TAIR) AT3G18600.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6399724-6403007 REVERSE LENGTH=568;; (*ITAG) Solyc03g114370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58425202-58432347 transcript_region:SL2.40ch03:58425202..58432347- go_terms:GO:0004004 functional_description:"Atp-dependent RNA helicase (AHRD V1 **** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00008011g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|241; (*TAIR) AT3G25640.1 (e_value=2e-49) | Symbols: | Protein of unknown function, DUF617 | chr3:9333775-9334578 FORWARD LENGTH=267;; (*ITAG) Solyc03g114390.1.1 (e_value=2e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00008011g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|118; (*TAIR) AT1G74055.1 (e_value=6e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27849279-27849713 FORWARD LENGTH=144;; (*ITAG) Solyc03g114430.1.1 (e_value=7e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58480040-58480369 transcript_region:SL2.40ch03:58480040..58480369- functional_description:"Unknown Protein (AHRD V1)"; NbS00008011g0023.1 protein AED:0.13 eAED:0.19 QI:512|0.66|0.85|1|0.33|0.42|7|191|440; (*SWP) sp|Q9FJJ3|SRO5_ARATH (e_value=4e-77) Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1;; (*TAIR) AT5G62520.1 (e_value=3e-78) | Symbols: SRO5 | similar to RCD one 5 | chr5:25098071-25099264 FORWARD LENGTH=309;; (*ITAG) Solyc03g114360.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58422049-58424255 transcript_region:SL2.40ch03:58422049..58424255- go_terms:GO:0016042,GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0016042,GO:0003950 NbS00008011g0009.1 protein AED:0.10 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|352; (*TAIR) AT1G23710.1 (e_value=6e-15) | Symbols: | Protein of unknown function (DUF1645) | chr1:8385363-8386250 FORWARD LENGTH=295;; (*ITAG) Solyc03g114350.1.1 (e_value=3e-106) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:58408606-58409475 transcript_region:SL2.40ch03:58408606..58409475+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00008011g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|161; (*SWP) sp|Q9FZ75|CML15_ARATH (e_value=2e-80) Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1;; (*TAIR) AT1G18530.1 (e_value=1e-81) | Symbols: | EF hand calcium-binding protein family | chr1:6376783-6377256 FORWARD LENGTH=157;; (*ITAG) Solyc03g114420.1.1 (e_value=1e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:58474677-58475192 transcript_region:SL2.40ch03:58474677..58475192- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6SJJ2_MAIZE); contains Interpro domain(s) IPR003299 Flagellar calcium-binding protein (calflagin) "; GO:0005509 NbS00008011g0021.1 protein AED:0.35 eAED:0.35 QI:160|1|0.83|1|0.8|0.66|6|0|158; (*SWP) sp|P49592|NC2B_ARATH (e_value=1e-85) Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1;; (*TAIR) AT5G23090.4 (e_value=2e-88) | Symbols: NF-YB13 | nuclear factor Y, subunit B13 | chr5:7749391-7750203 FORWARD LENGTH=158;; (*ITAG) Solyc06g069310.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:39454559-39458600 transcript_region:SL2.40ch06:39454559..39458600- go_terms:GO:0003700,GO:0003714 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 **-* B6UH02_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003700,GO:0003714 NbS00008011g0012.1 protein AED:0.17 eAED:0.17 QI:108|0.42|0.55|0.95|1|1|20|478|1094; (*SWP) sp|Q9HE07|YK96_SCHPO (e_value=8e-18) Uncharacterized protein C20H4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20H4.06c PE=2 SV=1;; (*TAIR) AT5G23080.2 (e_value=0.0) | Symbols: TGH | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein | chr5:7743226-7748889 REVERSE LENGTH=900;; (*ITAG) Solyc03g114410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58459455-58473996 transcript_region:SL2.40ch03:58459455..58473996+ go_terms:GO:0005515,GO:0003723 functional_description:"G-patch domain-containing protein (AHRD V1 *-*- C5GVR1_AJEDR); contains Interpro domain(s) IPR011666 Protein of unknown function DUF1604 "; GO:0005515,GO:0003723 NbS00008011g0016.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|250; (*ITAG) Solyc09g059560.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50448836-50449258 transcript_region:SL2.40ch09:50448836..50449258+ go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00008011g0026.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|79; (*TAIR) AT4G33820.1 (e_value=1e-15) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:16217010-16219515 REVERSE LENGTH=570;; (*ITAG) Solyc11g043160.1.1 (e_value=4e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:34983630-34987897 transcript_region:SL2.40ch11:34983630..34987897- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 ***- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00001917g0008.1 protein AED:0.03 eAED:0.08 QI:0|0.5|0|1|0.25|0.6|5|0|1094; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-177) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=3e-178) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc08g075590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56906117-56909996 transcript_region:SL2.40ch08:56906117..56909996- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00002048g0002.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|246; (*TAIR) AT2G46150.1 (e_value=9e-67) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:18961424-18962089 FORWARD LENGTH=221;; (*ITAG) Solyc01g095170.2.1 (e_value=6e-116) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00049522g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|0.66|0.5|4|0|269; (*TAIR) AT2G30900.1 (e_value=6e-101) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055780.2.1 (e_value=2e-174) genomic_reference:SL2.40ch07 gene_region:61037567-61042512 transcript_region:SL2.40ch07:61037567..61042512+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00020918g0002.1 protein AED:0.16 eAED:0.58 QI:387|1|0.5|1|0|0.5|2|0|548; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=3e-25) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT5G01980.1 (e_value=2e-68) | Symbols: | RING/U-box superfamily protein | chr5:375542-377023 FORWARD LENGTH=493;; (*ITAG) Solyc09g074460.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61757436-61758569 transcript_region:SL2.40ch09:61757436..61758569+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020918g0012.1 protein AED:0.11 eAED:0.21 QI:0|0|0|0.58|0.72|0.75|12|0|688; (*SWP) sp|Q9ULD4|BRPF3_HUMAN (e_value=6e-17) Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2;; (*TAIR) AT1G20670.1 (e_value=1e-33) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc09g055660.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:39118981-39121727 transcript_region:SL2.40ch09:39118981..39121727+ functional_description:"Bromodomain protein (AHRD V1 *--- B9IGX7_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00020918g0003.1 protein AED:0.30 eAED:0.30 QI:16|0.75|0.77|0.88|1|1|9|0|339; (*TAIR) AT5G01990.1 (e_value=9e-133) | Symbols: | Auxin efflux carrier family protein | chr5:377373-379600 REVERSE LENGTH=431;; (*ITAG) Solyc10g074790.1.1 (e_value=4e-153) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57831763-57835787 transcript_region:SL2.40ch10:57831763..57835787+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier family protein (AHRD V1 ***- D7M6D2_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0016021 NbS00016625g0014.1 protein AED:0.22 eAED:0.22 QI:213|1|1|1|0.83|0.71|7|449|361; (*TAIR) AT4G22740.2 (e_value=5e-57) | Symbols: | glycine-rich protein | chr4:11944050-11945565 REVERSE LENGTH=356;; (*ITAG) Solyc08g079500.2.1 (e_value=9e-142) genomic_reference:SL2.40ch08 gene_region:60170924-60173492 transcript_region:SL2.40ch08:60170924..60173492- functional_description:"AT2G45380 protein (Fragment) (AHRD V1 *-*- B9DGW8_ARATH)"; NbS00016625g0020.1 protein AED:0.28 eAED:0.28 QI:85|1|1|1|0.33|0.57|7|460|237; (*SWP) sp|B5XAM2|ICT1_SALSA (e_value=6e-28) Peptidyl-tRNA hydrolase ICT1, mitochondrial OS=Salmo salar GN=ict1 PE=2 SV=1;; (*TAIR) AT1G62850.3 (e_value=7e-97) | Symbols: | Class I peptide chain release factor | chr1:23272608-23274211 REVERSE LENGTH=236;; (*ITAG) Solyc08g079490.2.1 (e_value=3e-141) genomic_reference:SL2.40ch08 gene_region:60166784-60170216 transcript_region:SL2.40ch08:60166784..60170216- go_terms:GO:0006415 functional_description:"Class I peptide chain release factor (AHRD V1 *-*- D5C164_NITHN); contains Interpro domain(s) IPR000352 Class I peptide chain release factor "; GO:0006415 NbS00016625g0018.1 protein AED:0.14 eAED:0.14 QI:139|1|0.5|1|0|0|2|0|242; (*TAIR) AT2G45360.1 (e_value=1e-74) | Symbols: | Protein of unknown function (DUF1442) | chr2:18698619-18699360 FORWARD LENGTH=215;; (*ITAG) Solyc08g079480.2.1 (e_value=9e-130) genomic_reference:SL2.40ch08 gene_region:60164440-60165467 transcript_region:SL2.40ch08:60164440..60165467+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009902 Protein of unknown function DUF1442 "; NbS00016625g0004.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|287; (*TAIR) AT1G12330.1 (e_value=2e-121) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:4194673-4196627 FORWARD LENGTH=505;; (*ITAG) Solyc08g079510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60183796-60185872 transcript_region:SL2.40ch08:60183796..60185872+ go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00016625g0017.1 protein AED:0.46 eAED:0.46 QI:0|0.66|0.25|0.75|0.66|1|4|0|210; (*SWP) sp|O64628|TXND9_ARATH (e_value=7e-95) Thioredoxin domain-containing protein 9 homolog OS=Arabidopsis thaliana GN=At2g18990 PE=2 SV=1;; (*TAIR) AT2G18990.1 (e_value=6e-96) | Symbols: TXND9 | thioredoxin domain-containing protein 9 homolog | chr2:8238851-8239932 REVERSE LENGTH=211;; (*ITAG) Solyc11g012730.1.1 (e_value=2e-110) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5491671-5492554 transcript_region:SL2.40ch11:5491671..5492554+ go_terms:GO:0048487 functional_description:"Thioredoxin domain-containing protein 9 (AHRD V1 ***- B5XD78_SALSA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0048487 NbS00038588g0001.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|156; (*SWP) sp|Q84KK4|I4OMT_LOTJA (e_value=1e-35) Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=2e-15) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc02g077530.1.1 (e_value=5e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37009970-37011385 transcript_region:SL2.40ch02:37009970..37011385+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HK00_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00038588g0008.1 protein AED:0.06 eAED:0.15 QI:0|0.66|0|1|0.66|0.5|4|0|509; (*TAIR) AT5G46060.1 (e_value=3e-65) | Symbols: | Protein of unknown function, DUF599 | chr5:18681533-18682459 FORWARD LENGTH=248;; (*ITAG) Solyc02g077550.2.1 (e_value=1e-135) genomic_reference:SL2.40ch02 gene_region:37013976-37014860 transcript_region:SL2.40ch02:37013976..37014860+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00056412g0006.1 protein AED:0.01 eAED:0.02 QI:0|0.8|0.66|0.83|0.6|0.66|6|0|266; (*SWP) sp|Q2L969|MTX2_PIG (e_value=4e-13) Metaxin-2 OS=Sus scrofa GN=MTX2 PE=2 SV=1;; (*TAIR) AT2G19080.1 (e_value=1e-99) | Symbols: | metaxin-related | chr2:8262818-8264746 FORWARD LENGTH=315;; (*ITAG) Solyc07g009320.2.1 (e_value=3e-162) genomic_reference:SL2.40ch07 gene_region:4363246-4373784 transcript_region:SL2.40ch07:4363246..4373784- go_terms:GO:0005515 functional_description:"Metaxin 2 (AHRD V1 ***- Q1KKR5_TAKRU); contains Interpro domain(s) IPR019564 Outer mitochondrial membrane transport complex protein, Tom37/Metaxin "; GO:0005515 NbS00056412g0007.1 protein AED:0.21 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|0|83; (*ITAG) Solyc07g009290.2.1 (e_value=5e-14) genomic_reference:SL2.40ch07 gene_region:4351188-4351857 transcript_region:SL2.40ch07:4351188..4351857+ functional_description:"Pit1 protein (AHRD V1 ***- Q40539_TOBAC)"; NbS00008817g0007.1 protein AED:0.19 eAED:0.20 QI:0|0.5|0|1|0.5|0.33|3|0|994; (*TAIR) AT5G59020.1 (e_value=9e-29) | Symbols: | Protein of unknown function (DUF3527) | chr5:23827160-23829603 REVERSE LENGTH=780;; (*ITAG) Solyc09g011720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008754g0019.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|232; (*ITAG) Solyc11g010160.1.1 (e_value=9e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00008754g0022.1 protein AED:0.13 eAED:0.31 QI:0|0|0|1|0|0|12|0|2997; (*SWP) sp|Q39214|RPM1_ARATH (e_value=1e-93) Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1;; (*TAIR) AT3G07040.1 (e_value=9e-95) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc11g010160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00013481g0006.1 protein AED:0.12 eAED:0.12 QI:529|1|0.92|1|0.91|0.84|13|362|706; (*SWP) sp|B2V855|GATA_SULSY (e_value=4e-45) Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1;; (*TAIR) AT5G07360.1 (e_value=0.0) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=659;; (*ITAG) Solyc03g118030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61071281-61076037 transcript_region:SL2.40ch03:61071281..61076037- go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- Q2S207_SALRD); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00046863g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|597; (*SWP) sp|Q06355|PPOB_SOLTU (e_value=0.0) Catechol oxidase B, chloroplastic (Fragment) OS=Solanum tuberosum PE=2 SV=1;; (*ITAG) Solyc08g074620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:55911248-55913011 transcript_region:SL2.40ch08:55911248..55913011+ go_terms:GO:0008152,GO:0055114 functional_description:"Polyphenol oxidase (AHRD V1 ***- Q41428_SOLTU); contains Interpro domain(s) IPR016213 Polyphenol oxidase, plant "; GO:0008152,GO:0055114 NbS00046863g0001.1 protein AED:0.29 eAED:0.33 QI:0|1|0.5|1|0|0|2|73|514; (*SWP) sp|Q9C801|MOS2_ARATH (e_value=3e-107) Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1;; (*TAIR) AT1G33520.1 (e_value=2e-108) | Symbols: MOS2 | D111/G-patch domain-containing protein | chr1:12157488-12158876 REVERSE LENGTH=462;; (*ITAG) Solyc08g074570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55846727-55848184 transcript_region:SL2.40ch08:55846727..55848184+ go_terms:GO:0005515,GO:0003723 functional_description:"G patch domain and KOW motifs-containing protein (AHRD V1 *--- GPKOW_XENLA); contains Interpro domain(s) IPR005824 KOW "; GO:0005515,GO:0003723 NbS00046863g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|403; (*SWP) sp|Q8GX29|SKI25_ARATH (e_value=4e-109) F-box/kelch-repeat protein SKIP25 OS=Arabidopsis thaliana GN=SKIP25 PE=1 SV=1;; (*TAIR) AT1G31350.1 (e_value=3e-110) | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221519-11222706 REVERSE LENGTH=395;; (*ITAG) Solyc08g074660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55984518-55985708 transcript_region:SL2.40ch08:55984518..55985708+ functional_description:"F-box/kelch-repeat protein At3g27150 (AHRD V1 *-*- FBK70_ARATH); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00046863g0012.1 protein AED:0.35 eAED:0.35 QI:110|0.42|0.5|1|0.57|0.62|8|271|298; (*SWP) sp|O64862|CTU1_ARATH (e_value=5e-146) Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2;; (*TAIR) AT2G44270.1 (e_value=4e-147) | Symbols: ROL5 | repressor of lrx1 | chr2:18298078-18300153 REVERSE LENGTH=355;; (*ITAG) Solyc08g074590.2.1 (e_value=5e-146) genomic_reference:SL2.40ch08 gene_region:55854463-55859432 transcript_region:SL2.40ch08:55854463..55859432- go_terms:GO:0005515,GO:0000049 functional_description:"tRNA 2-thiocytidine biosynthesis protein TtcA (AHRD V1 **** TTCA_MYXXD); contains Interpro domain(s) IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA "; GO:0005515,GO:0000049 NbS00004601g0009.1 protein AED:0.60 eAED:0.68 QI:0|0|0.25|0.5|0|0|4|226|297 NbS00004601g0007.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|377; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=3e-72) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT5G57620.1 (e_value=3e-83) | Symbols: MYB36, AtMYB36 | myb domain protein 36 | chr5:23334904-23336388 FORWARD LENGTH=333;; (*ITAG) Solyc07g006750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1589096-1591496 transcript_region:SL2.40ch07:1589096..1591496- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00004601g0011.1 protein AED:0.17 eAED:0.19 QI:0|0.22|0.1|1|0.77|0.8|10|0|1149; (*SWP) sp|Q05609|CTR1_ARATH (e_value=7e-47) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G57610.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr5:23325307-23329099 FORWARD LENGTH=1054;; (*ITAG) Solyc07g006760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1599263-1605156 transcript_region:SL2.40ch07:1599263..1605156- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0004712 NbS00040215g0003.1 protein AED:0.52 eAED:0.72 QI:51|0.5|0|1|0.5|0.66|3|0|115; (*ITAG) Solyc07g063540.2.1 (e_value=9e-32) genomic_reference:SL2.40ch07 gene_region:63218222-63221060 transcript_region:SL2.40ch07:63218222..63221060- functional_description:"Unknown Protein (AHRD V1)"; NbS00006091g0015.1 protein AED:0.13 eAED:0.13 QI:333|0.82|0.83|1|0.75|0.73|30|450|1198; (*SWP) sp|Q9CW03|SMC3_MOUSE (e_value=0.0) Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2;; (*TAIR) AT2G27170.2 (e_value=0.0) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00006091g0016.1 protein AED:0.28 eAED:0.28 QI:85|0.83|0.85|1|0.66|0.57|7|237|191; (*SWP) sp|P17093|RS11_SOYBN (e_value=8e-86) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=3e-82) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=2e-88) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00006091g0004.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|183; (*SWP) sp|Q9SRE6|CML38_ARATH (e_value=2e-44) Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=1e-45) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc06g073830.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:41978680-41979234 transcript_region:SL2.40ch06:41978680..41979234- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006091g0020.1 protein AED:0.32 eAED:0.38 QI:175|0.55|0.6|1|0.33|0.5|10|0|555; (*SWP) sp|O42395|CNBP_CHICK (e_value=1e-12) Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1;; (*TAIR) AT3G43590.1 (e_value=7e-45) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551;; (*ITAG) Solyc06g073810.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41946839-41953093 transcript_region:SL2.40ch06:41946839..41953093- go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 *--- C1BKU7_OSMMO); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00022304g0003.1 protein AED:0.11 eAED:0.11 QI:46|1|1|1|0.5|0.6|5|69|366; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=8e-125) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=6e-126) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc04g081770.2.1 (e_value=9e-178) genomic_reference:SL2.40ch04 gene_region:63283322-63285545 transcript_region:SL2.40ch04:63283322..63285545+ go_terms:GO:0008415,GO:0004091 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0008415,GO:0004091 NbS00032054g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|1|1|4|0|588; (*SWP) sp|Q9LPW7|AFB3_ARATH (e_value=0.0) Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1;; (*TAIR) AT1G12820.1 (e_value=0.0) | Symbols: AFB3 | auxin signaling F-box 3 | chr1:4368879-4370780 REVERSE LENGTH=577;; (*ITAG) Solyc09g074520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61827972-61831778 transcript_region:SL2.40ch09:61827972..61831778+ go_terms:GO:0030674 functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030674 NbS00032054g0002.1 protein AED:0.07 eAED:0.07 QI:403|0.75|0.8|1|0.75|0.6|5|254|105; (*TAIR) AT5G14030.4 (e_value=6e-44) | Symbols: | translocon-associated protein beta (TRAPB) family protein | chr5:4526878-4528253 FORWARD LENGTH=195;; (*ITAG) Solyc02g094440.2.1 (e_value=3e-53) genomic_reference:SL2.40ch02 gene_region:49544950-49547808 transcript_region:SL2.40ch02:49544950..49547808+ go_terms:GO:0016021 functional_description:"Translocon-associated protein subunit beta (AHRD V1 ***- C1C3L8_RANCA); contains Interpro domain(s) IPR008856 Translocon-associated beta "; GO:0016021 NbC24991624g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|147; (*SWP) sp|P30172|ACT12_SOLTU (e_value=4e-67) Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=1e-67) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=6e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00006837g0010.1 protein AED:0.08 eAED:0.08 QI:291|0.84|0.78|1|0.84|0.71|14|231|782; (*SWP) sp|P49037|SUSY_SOLLC (e_value=0.0) Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G43190.1 (e_value=0.0) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc12g009300.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2573935-2577879 transcript_region:SL2.40ch12:2573935..2577879- go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** O82693_SOLLC); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00006837g0004.1 protein AED:0.23 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|127; (*TAIR) AT5G20820.1 (e_value=3e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7046911-7047294 REVERSE LENGTH=127;; (*ITAG) Solyc12g009290.1.1 (e_value=3e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:2564691-2565080 transcript_region:SL2.40ch12:2564691..2565080- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 *-*- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00021065g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|350; (*SWP) sp|Q8GSN1|MOMT_CATRO (e_value=5e-120) Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=4e-54) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g068550.2.1 (e_value=5e-173) genomic_reference:SL2.40ch01 gene_region:70160716-70161864 transcript_region:SL2.40ch01:70160716..70161864+ go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase (AHRD V1 ***- A5HJZ9_VITVI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00021065g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|115 NbS00024325g0013.1 protein AED:0.01 eAED:0.01 QI:0|0.55|0.6|0.9|0.88|1|10|0|823; (*SWP) sp|Q9BQK8|LPIN3_HUMAN (e_value=4e-57) Phosphatidate phosphatase LPIN3 OS=Homo sapiens GN=LPIN3 PE=1 SV=3;; (*TAIR) AT3G09560.3 (e_value=2e-163) | Symbols: | Lipin family protein | chr3:2934953-2938673 REVERSE LENGTH=904;; (*ITAG) Solyc10g084540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63343022-63351761 transcript_region:SL2.40ch10:63343022..63351761+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; NbS00024325g0004.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|67; (*ITAG) Solyc01g057890.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:57024979-57027433 transcript_region:SL2.40ch01:57024979..57027433- functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9LTL3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00024325g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|157; (*TAIR) AT3G58090.1 (e_value=2e-29) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr3:21512479-21513905 REVERSE LENGTH=271;; (*ITAG) Solyc10g084440.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63300525-63301013 transcript_region:SL2.40ch10:63300525..63301013+ functional_description:"AT hook motif family protein (AHRD V1 ***- B6THS5_MAIZE)"; NbS00024325g0002.1 protein AED:0.00 eAED:0.00 QI:696|0|0.5|1|0|0.5|2|642|104; (*ITAG) Solyc09g007060.2.1 (e_value=3e-19) genomic_reference:SL2.40ch09 gene_region:712078-714475 transcript_region:SL2.40ch09:712078..714475+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00024325g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|400; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=2e-73) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G18520.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:6145027-6146349 FORWARD LENGTH=440;; (*ITAG) Solyc09g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:641683-644775 transcript_region:SL2.40ch09:641683..644775+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00024325g0015.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|160; (*ITAG) Solyc10g084510.1.1 (e_value=8e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63334491-63334850 transcript_region:SL2.40ch10:63334491..63334850- functional_description:"Unknown Protein (AHRD V1)"; NbS00036118g0003.1 protein AED:0.21 eAED:0.21 QI:651|0.62|0.66|1|0.87|0.77|9|0|600; (*SWP) sp|Q6R0E3|TRP5_ARATH (e_value=2e-119) Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2;; (*TAIR) AT1G07540.1 (e_value=2e-120) | Symbols: TRFL2 | TRF-like 2 | chr1:2318433-2321048 REVERSE LENGTH=630;; (*ITAG) Solyc06g005590.2.1 (e_value=6e-159) genomic_reference:SL2.40ch06 gene_region:634483-638227 transcript_region:SL2.40ch06:634483..638227+ go_terms:GO:0042162,GO:0042803 functional_description:"Telomere repeat-binding protein 5 (AHRD V1 **** TRP5_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0042162,GO:0042803 NbS00003145g0010.1 protein AED:0.13 eAED:0.13 QI:234|0.88|0.9|1|0.77|0.6|10|418|652; (*TAIR) AT4G37900.1 (e_value=0.0) | Symbols: | Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787;; (*ITAG) Solyc02g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47471715-47476114 transcript_region:SL2.40ch02:47471715..47476114+ functional_description:"Glycine-rich protein (Fragment) (AHRD V1 *--- Q677B7_HYAOR); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00003145g0007.1 protein AED:0.14 eAED:0.14 QI:113|1|1|1|0.8|0.66|6|295|427; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=0.0) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT4G37920.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17828538-17830317 REVERSE LENGTH=427;; (*ITAG) Solyc02g091640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47466448-47471004 transcript_region:SL2.40ch02:47466448..47471004+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00049421g0009.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|3|0|203; (*ITAG) Solyc01g007460.2.1 (e_value=4e-15) genomic_reference:SL2.40ch01 gene_region:1865356-1865663 transcript_region:SL2.40ch01:1865356..1865663+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 chloroplastic (AHRD V1 ***- D3WEG6_HEUSA); contains Interpro domain(s) IPR001648 Ribosomal protein S18 "; GO:0005840 NbS00019213g0006.1 protein AED:0.10 eAED:0.11 QI:0|1|0.8|1|1|1|5|252|417; (*SWP) sp|Q93ZH0|LYM1_ARATH (e_value=3e-176) LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1;; (*TAIR) AT1G21880.2 (e_value=2e-177) | Symbols: LYM1 | lysm domain GPI-anchored protein 1 precursor | chr1:7680689-7682526 FORWARD LENGTH=416;; (*ITAG) Solyc11g012870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5656257-5659159 transcript_region:SL2.40ch11:5656257..5659159- go_terms:GO:0006508,GO:0016998 functional_description:"LysM domain containing protein (AHRD V1 *-*- Q2R2V0_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0006508,GO:0016998 NbS00019213g0002.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|417; (*TAIR) AT3G19990.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:6965671-6967102 FORWARD LENGTH=425;; (*ITAG) Solyc11g006360.1.1 (e_value=5e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1074434-1074772 transcript_region:SL2.40ch11:1074434..1074772- functional_description:"Genomic DNA chromosome 3 P1 clone MZE19 (AHRD V1 ***- Q9LHE6_ARATH)"; NbS00020879g0005.1 protein AED:0.15 eAED:0.13 QI:0|0.9|0.81|1|0.9|1|11|0|449; (*SWP) sp|Q6D2F1|ARNA_ERWCT (e_value=3e-63) Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1;; (*TAIR) AT1G08200.1 (e_value=0.0) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc11g066720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49591441-49595951 transcript_region:SL2.40ch11:49591441..49595951+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0044237,GO:0008152 NbS00029896g0012.1 protein AED:0.13 eAED:0.13 QI:194|1|1|1|1|1|3|606|264; (*SWP) sp|Q9ZUT3|ALS3_ARATH (e_value=8e-150) Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thaliana GN=ALS3 PE=1 SV=1;; (*TAIR) AT2G37330.1 (e_value=6e-151) | Symbols: ALS3 | aluminum sensitive 3 | chr2:15669190-15670172 FORWARD LENGTH=273;; (*ITAG) Solyc10g085950.1.1 (e_value=1e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64285139-64288580 transcript_region:SL2.40ch10:64285139..64288580+ functional_description:"Predicted inner membrane protein (AHRD V1 ***- B7UKH4_ECO27); contains Interpro domain(s) IPR005226 Conserved hypothetical protein CHP00245 "; NbS00029896g0013.1 protein AED:0.32 eAED:0.32 QI:231|1|1|1|0.6|0.45|11|2103|82; (*ITAG) Solyc10g085980.1.1 (e_value=1e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64295092-64302759 transcript_region:SL2.40ch10:64295092..64302759+ go_terms:GO:0016021 functional_description:"Integral membrane protein TerC (AHRD V1 ***- A9B4B1_HERA2); contains Interpro domain(s) IPR005496 Integral membrane protein TerC "; GO:0016021 NbS00029896g0011.1 protein AED:0.25 eAED:0.25 QI:129|1|1|1|1|1|5|8|370; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=1e-175) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc10g085990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64303655-64308110 transcript_region:SL2.40ch10:64303655..64308110- go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00029896g0002.1 protein AED:0.40 eAED:0.42 QI:227|0.5|0.57|0.85|1|1|7|0|453; (*SWP) sp|Q00008|PRMS_MAIZE (e_value=7e-31) Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1;; (*TAIR) AT3G09590.1 (e_value=3e-36) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr3:2944953-2945513 FORWARD LENGTH=186;; (*ITAG) Solyc10g085960.1.1 (e_value=1e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64288769-64289575 transcript_region:SL2.40ch10:64288769..64289575- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 *--- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00032204g0008.1 protein AED:0.23 eAED:0.23 QI:0|0.87|0.66|1|0.87|0.88|9|425|500; (*TAIR) AT1G59650.1 (e_value=0.0) | Symbols: CW14 | Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492;; (*ITAG) Solyc05g006660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1331164-1338948 transcript_region:SL2.40ch05:1331164..1338948+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00032204g0007.1 protein AED:0.11 eAED:0.21 QI:0|0|0|1|0|0|4|0|532; (*SWP) sp|Q42371|ERECT_ARATH (e_value=7e-56) LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1;; (*TAIR) AT5G23400.1 (e_value=4e-61) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7880603-7882372 FORWARD LENGTH=589;; (*ITAG) Solyc05g006670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1339459-1341369 transcript_region:SL2.40ch05:1339459..1341369- go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00018643g0012.1 protein AED:0.05 eAED:0.18 QI:0|0|0|0.66|0.5|0.33|3|0|1220; (*SWP) sp|P0CB23|Y4862_ARATH (e_value=6e-53) Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=2 SV=1;; (*TAIR) AT4G38070.1 (e_value=2e-53) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=1513;; (*ITAG) Solyc11g010620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbS00018643g0013.1 protein AED:0.20 eAED:0.20 QI:275|0.91|0.92|1|0.66|0.61|13|0|730; (*SWP) sp|Q56X46|MSL2_ARATH (e_value=0.0) Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1;; (*TAIR) AT5G10490.1 (e_value=0.0) | Symbols: MSL2 | MSCS-like 2 | chr5:3300376-3304005 REVERSE LENGTH=673;; (*ITAG) Solyc11g010610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3669673-3676723 transcript_region:SL2.40ch11:3669673..3676723- go_terms:GO:0016020 functional_description:"Small conductance mechanosensitive (MscS-family) ion channel (AHRD V1 *-*- Q31G33_THICR); contains Interpro domain(s) IPR006685 Mechanosensitive ion channel MscS "; GO:0016020 NbS00018643g0011.1 protein AED:0.26 eAED:0.26 QI:0|1|0.88|1|1|1|9|0|471; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-75) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G65470.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:26172432-26174904 FORWARD LENGTH=504;; (*ITAG) Solyc11g010600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3663373-3668581 transcript_region:SL2.40ch11:3663373..3668581+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00004216g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|427; (*SWP) sp|Q9SN22|SCL32_ARATH (e_value=3e-180) Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1;; (*TAIR) AT3G49950.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr3:18522570-18523802 FORWARD LENGTH=410;; (*ITAG) Solyc02g092570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48200568-48201884 transcript_region:SL2.40ch02:48200568..48201884+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9GYX5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00013084g0014.1 protein AED:0.15 eAED:0.15 QI:168|1|1|1|0.54|0.41|12|986|1186; (*TAIR) AT5G58610.1 (e_value=3e-135) | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065;; (*ITAG) Solyc09g031580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:21995732-22004663 transcript_region:SL2.40ch09:21995732..22004663+ go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein (AHRD V1 *--* Q16K27_AEDAE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00013084g0015.1 protein AED:0.19 eAED:0.19 QI:56|0.5|0.42|1|0.33|0.14|7|0|320; (*TAIR) AT5G58600.1 (e_value=1e-127) | Symbols: PMR5, TBL44 | Plant protein of unknown function (DUF828) | chr5:23683944-23685679 REVERSE LENGTH=402;; (*ITAG) Solyc06g082070.2.1 (e_value=1e-173) genomic_reference:SL2.40ch06 gene_region:44298357-44301354 transcript_region:SL2.40ch06:44298357..44301354+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00013084g0016.1 protein AED:0.22 eAED:0.23 QI:0|0.92|0.78|1|0.92|0.85|14|0|584; (*SWP) sp|P49078|ASNS_ARATH (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00023286g0004.1 protein AED:0.08 eAED:0.08 QI:266|0.76|0.78|1|0.92|0.85|14|525|323; (*SWP) sp|Q84L33|RD23A_ARATH (e_value=5e-95) Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3;; (*TAIR) AT1G79650.2 (e_value=2e-98) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365;; (*ITAG) Solyc03g117780.2.1 (e_value=2e-118) genomic_reference:SL2.40ch03 gene_region:60859826-60864595 transcript_region:SL2.40ch03:60859826..60864595- go_terms:GO:0031593 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593 NbS00023286g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|421; (*TAIR) AT2G24530.1 (e_value=2e-80) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc03g117820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60892138-60893394 transcript_region:SL2.40ch03:60892138..60893394+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00042162g0001.1 protein AED:0.18 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|152; (*SWP) sp|O23078|PLDB2_ARATH (e_value=4e-36) Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3;; (*TAIR) AT4G00240.1 (e_value=3e-37) | Symbols: PLDBETA2 | phospholipase D beta 2 | chr4:106380-110718 REVERSE LENGTH=927;; (*ITAG) Solyc10g017650.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5527501-5533630 transcript_region:SL2.40ch10:5527501..5533630+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR015679 Phospholipase D "; GO:0005515,GO:0004630 NbS00058663g0002.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|1|1|2|0|167; (*SWP) sp|P07369|CB2G_SOLLC (e_value=7e-95) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1;; (*TAIR) AT2G34430.1 (e_value=3e-87) | Symbols: LHB1B1, LHCB1.4 | light-harvesting chlorophyll-protein complex II subunit B1 | chr2:14524818-14525618 FORWARD LENGTH=266;; (*ITAG) Solyc03g005780.1.1 (e_value=5e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00035380g0005.1 protein AED:0.10 eAED:0.10 QI:72|1|1|1|1|1|4|342|392; (*SWP) sp|P44331|RBSK_HAEIN (e_value=6e-44) Ribokinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rbsK PE=3 SV=1;; (*TAIR) AT1G17160.1 (e_value=3e-173) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:5867678-5869215 FORWARD LENGTH=379;; (*ITAG) Solyc07g062070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62119223-62123240 transcript_region:SL2.40ch07:62119223..62123240+ go_terms:GO:0005515 functional_description:"Ribokinase (AHRD V1 ***- C5RCK9_WEIPA); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00035380g0022.1 protein AED:0.27 eAED:0.32 QI:0|0.6|0.33|1|0.8|0.83|6|0|316; (*SWP) sp|Q53B75|CF1B1_SOYBN (e_value=9e-15) Chalcone--flavonone isomerase 1B-1 OS=Glycine max GN=CHI1B1 PE=2 SV=1;; (*TAIR) AT1G53520.1 (e_value=1e-96) | Symbols: | Chalcone-flavanone isomerase family protein | chr1:19976485-19977915 REVERSE LENGTH=287;; (*ITAG) Solyc07g062030.2.1 (e_value=3e-151) genomic_reference:SL2.40ch07 gene_region:62098170-62101182 transcript_region:SL2.40ch07:62098170..62101182+ go_terms:GO:0042398,GO:0009813 functional_description:"Chalcone--flavonone isomerase (AHRD V1 ***- B6SK22_MAIZE); contains Interpro domain(s) IPR003466 Chalcone isomerase, subgroup "; GO:0042398,GO:0009813 NbS00035380g0020.1 protein AED:0.24 eAED:0.19 QI:902|0.77|0.7|1|0.66|0.4|10|0|539; (*TAIR) AT1G78540.1 (e_value=4e-116) | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B | chr1:29541244-29544574 REVERSE LENGTH=668;; (*ITAG) Solyc07g062050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62105241-62113721 transcript_region:SL2.40ch07:62105241..62113721- go_terms:GO:0005515 functional_description:"Signal transducer and activator of transcription B (AHRD V1 *-*- STATB_DICDI); contains Interpro domain(s) IPR000980 SH2 motif "; GO:0005515 NbS00035380g0027.1 protein AED:0.20 eAED:0.20 QI:63|1|1|1|1|1|5|283|198; (*SWP) sp|Q9C8M2|MSRB1_ARATH (e_value=3e-87) Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1;; (*TAIR) AT1G53670.1 (e_value=2e-88) | Symbols: MSRB1, ATMSRB1 | methionine sulfoxide reductase B 1 | chr1:20036687-20038074 FORWARD LENGTH=202;; (*ITAG) Solyc07g062060.2.1 (e_value=4e-98) genomic_reference:SL2.40ch07 gene_region:62114496-62117377 transcript_region:SL2.40ch07:62114496..62117377- go_terms:GO:0055114 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 ***- B6T2N3_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0055114 NbS00035380g0019.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.57|1|0.83|0.85|7|502|381; (*SWP) sp|Q9SYM9|Y1853_ARATH (e_value=7e-172) Receptor-like serine/threonine-protein kinase At1g78530 OS=Arabidopsis thaliana GN=At1g78530 PE=2 SV=1;; (*TAIR) AT1G78530.1 (e_value=5e-173) | Symbols: | Protein kinase superfamily protein | chr1:29539274-29540681 REVERSE LENGTH=355;; (*ITAG) Solyc07g062040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62101108-62102746 transcript_region:SL2.40ch07:62101108..62102746- go_terms:GO:0005515,GO:0004674 functional_description:"ATP-binding/protein serine/threonine kinase (AHRD V1 **** C6ZRM4_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00035380g0024.1 protein AED:0.35 eAED:0.38 QI:156|0.5|0.6|0.8|1|1|5|0|151; (*SWP) sp|P52409|E13B_WHEAT (e_value=7e-17) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT1G78520.1 (e_value=2e-36) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:29537976-29538656 REVERSE LENGTH=115;; (*ITAG) Solyc10g007510.1.1 (e_value=4e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1843471-1845356 transcript_region:SL2.40ch10:1843471..1845356+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 ***- B6T324_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00035380g0012.1 protein AED:0.88 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|60 NbS00003792g0001.1 protein AED:0.15 eAED:0.15 QI:143|1|0.5|1|1|1|2|490|841; (*TAIR) AT1G08800.2 (e_value=6e-60) | Symbols: | Protein of unknown function, DUF593 | chr1:2813578-2817078 REVERSE LENGTH=1113;; (*ITAG) Solyc01g097040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79776168-79780478 transcript_region:SL2.40ch01:79776168..79780478+ functional_description:"IFA-binding protein-like (AHRD V1 *-*- Q5ZC01_ORYSJ); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00003792g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.4|1|1|1|5|0|139; (*SWP) sp|O22969|Y2416_ARATH (e_value=8e-46) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT3G04620.1 (e_value=2e-50) | Symbols: | Alba DNA/RNA-binding protein | chr3:1255660-1256739 REVERSE LENGTH=164;; (*ITAG) Solyc01g097050.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:79780944-79783526 transcript_region:SL2.40ch01:79780944..79783526- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 *-*- D7L2W2_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00003792g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|152; (*TAIR) AT5G17760.1 (e_value=2e-36) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:5860591-5862301 REVERSE LENGTH=505;; (*ITAG) Solyc02g084910.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00003792g0015.1 protein AED:0.16 eAED:0.32 QI:86|0|0|1|0|0|2|0|158; (*ITAG) Solyc04g053070.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00049030g0003.1 protein AED:0.37 eAED:0.65 QI:0|0|0.33|1|0|0|3|159|82 NbS00049030g0001.1 protein AED:0.29 eAED:0.29 QI:141|0|0.5|1|0|0.5|2|0|352; (*SWP) sp|Q9LMM6|BPS1_ARATH (e_value=3e-124) Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1;; (*TAIR) AT2G46080.1 (e_value=8e-137) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347;; (*ITAG) Solyc01g094950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78113463-78115886 transcript_region:SL2.40ch01:78113463..78115886+ functional_description:"Protein BPS1, chloroplastic (AHRD V1 **-- BPS1_ARATH)"; NbS00045391g0010.1 protein AED:0.21 eAED:0.24 QI:0|0.5|0.33|1|0|0.33|3|0|415; (*ITAG) Solyc03g112110.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:56677468-56678764 transcript_region:SL2.40ch03:56677468..56678764+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045391g0009.1 protein AED:0.35 eAED:0.36 QI:0|0.8|0.66|1|0.6|0.5|6|0|215; (*ITAG) Solyc03g112120.1.1 (e_value=2e-108) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:56678870-56681330 transcript_region:SL2.40ch03:56678870..56681330+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045391g0002.1 protein AED:0.27 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|186; (*TAIR) AT4G12690.2 (e_value=2e-52) | Symbols: | Plant protein of unknown function (DUF868) | chr4:7480896-7481753 FORWARD LENGTH=285;; (*ITAG) Solyc03g112130.1.1 (e_value=2e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56683176-56684132 transcript_region:SL2.40ch03:56683176..56684132- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00045391g0004.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.2|1|1|5|0|273; (*TAIR) AT2G04220.1 (e_value=4e-18) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc03g112130.1.1 (e_value=9e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56683176-56684132 transcript_region:SL2.40ch03:56683176..56684132- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00026729g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|0.42|0.62|8|825|1588; (*TAIR) AT1G05380.2 (e_value=0.0) | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr1:1577231-1582190 FORWARD LENGTH=1138;; (*ITAG) Solyc09g076010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63191720-63202894 transcript_region:SL2.40ch09:63191720..63202894+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00028890g0004.1 protein AED:0.11 eAED:0.11 QI:16|0.94|0.88|1|0.88|0.88|18|497|615; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=0.0) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=0.0) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00032601g0001.1 protein AED:0.00 eAED:0.04 QI:194|0|0.5|1|0|1|2|0|123; (*ITAG) Solyc10g076880.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59187079-59187814 transcript_region:SL2.40ch10:59187079..59187814+ functional_description:"Hsp20/alpha crystallin family protein expressed (AHRD V1 **-- Q10FT7_ORYSJ); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00032601g0008.1 protein AED:0.15 eAED:0.15 QI:460|0.88|0.8|1|0.88|0.7|10|624|1104; (*SWP) sp|Q6NRS1|IBTK_XENLA (e_value=1e-33) Inhibitor of Bruton tyrosine kinase OS=Xenopus laevis GN=ibtk PE=2 SV=1;; (*TAIR) AT3G03790.2 (e_value=0.0) | Symbols: | ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein | chr3:963195-967857 FORWARD LENGTH=1081;; (*ITAG) Solyc01g056570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47598007-47606622 transcript_region:SL2.40ch01:47598007..47606622- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 *--- D0NM06_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00032601g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|82 NbS00037667g0012.1 protein AED:0.00 eAED:0.00 QI:179|1|0.5|1|1|1|2|0|106; (*TAIR) AT3G55480.2 (e_value=1e-43) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20571171 REVERSE LENGTH=1115;; (*ITAG) Solyc06g043030.2.1 (e_value=3e-50) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00037667g0019.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.4|1|0.75|0.8|5|0|616; (*SWP) sp|Q9M2T1|AP3BA_ARATH (e_value=0.0) AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2;; (*TAIR) AT3G55480.1 (e_value=0.0) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20570629 REVERSE LENGTH=987;; (*ITAG) Solyc06g043030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00037667g0018.1 protein AED:0.62 eAED:0.80 QI:0|0|0|1|0.5|0|3|0|82; (*SWP) sp|Q9M2T1|AP3BA_ARATH (e_value=3e-23) AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2;; (*TAIR) AT3G55480.1 (e_value=2e-24) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20570629 REVERSE LENGTH=987;; (*ITAG) Solyc06g043030.2.1 (e_value=4e-32) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00037667g0020.1 protein AED:0.07 eAED:0.07 QI:0|0.85|0.75|1|0.71|0.62|8|413|523; (*TAIR) AT2G39690.1 (e_value=2e-141) | Symbols: | Protein of unknown function, DUF547 | chr2:16541165-16543267 FORWARD LENGTH=498;; (*ITAG) Solyc06g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:2457956-2463621 transcript_region:SL2.40ch06:2457956..2463621+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 ***- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00037667g0008.1 protein AED:0.10 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|138 NbS00027223g0005.1 protein AED:0.31 eAED:0.31 QI:99|1|1|1|0.5|0.66|3|269|326; (*SWP) sp|Q3ANN0|GRPE_SYNSC (e_value=2e-38) Protein grpE OS=Synechococcus sp. (strain CC9605) GN=grpE PE=3 SV=1;; (*TAIR) AT1G36390.2 (e_value=2e-56) | Symbols: | Co-chaperone GrpE family protein | chr1:13701811-13703524 REVERSE LENGTH=279;; (*ITAG) Solyc11g013390.1.1 (e_value=1e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6377812-6379689 transcript_region:SL2.40ch11:6377812..6379689- go_terms:GO:0005739 functional_description:"GrpE protein homolog (AHRD V1 *-*- B9GUH1_POPTR); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005739 NbS00018794g0012.1 protein AED:0.14 eAED:0.14 QI:65|0.83|0.85|1|1|1|7|270|313; (*SWP) sp|Q8GXL7|GAT24_ARATH (e_value=1e-60) GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2;; (*TAIR) AT3G21175.2 (e_value=1e-63) | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295;; (*ITAG) Solyc10g047640.1.1 (e_value=2e-131) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:37003876-37016335 transcript_region:SL2.40ch10:37003876..37016335+ go_terms:GO:0008431 functional_description:"GATA transcription factor 25 (AHRD V1 **-- B6T4L5_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0008431 NbS00018794g0011.1 protein AED:0.13 eAED:0.15 QI:510|0.66|0.25|1|1|1|4|0|175; (*TAIR) AT5G64400.1 (e_value=3e-34) | Symbols: | CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25748922-25750182 FORWARD LENGTH=144;; (*ITAG) Solyc10g047650.1.1 (e_value=6e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:37017583-37019644 transcript_region:SL2.40ch10:37017583..37019644+ go_terms:GO:0005515 functional_description:"p8MTCP1 (AHRD V1 ***- B6TKB9_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0005515 NbS00018794g0010.1 protein AED:0.13 eAED:0.15 QI:510|0.66|0.25|1|1|1|4|0|175; (*TAIR) AT5G64400.1 (e_value=3e-34) | Symbols: | CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625); BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25748922-25750182 FORWARD LENGTH=144;; (*ITAG) Solyc10g047650.1.1 (e_value=6e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:37017583-37019644 transcript_region:SL2.40ch10:37017583..37019644+ go_terms:GO:0005515 functional_description:"p8MTCP1 (AHRD V1 ***- B6TKB9_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0005515 NbS00018794g0013.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|3|0|70 NbC25276195g0002.1 protein AED:0.60 eAED:0.60 QI:80|0|0|0.5|1|0.5|2|0|43 NbS00056013g0003.1 protein AED:0.04 eAED:0.04 QI:81|0|0.5|1|0|0.5|2|0|172; (*SWP) sp|Q9SHU7|TIC21_ARATH (e_value=4e-43) Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1 SV=1;; (*TAIR) AT2G15290.1 (e_value=3e-44) | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon at inner membrane of chloroplasts 21 | chr2:6642512-6644011 REVERSE LENGTH=296;; (*ITAG) Solyc01g107640.2.1 (e_value=4e-69) genomic_reference:SL2.40ch01 gene_region:86881312-86885702 transcript_region:SL2.40ch01:86881312..86885702- go_terms:GO:0042803,GO:0015088,GO:0005381 functional_description:"Tic21 (AHRD V1 **-- Q09S70_PEA)"; GO:0042803,GO:0015088,GO:0005381 NbC25806234g0001.1 protein AED:0.00 eAED:0.00 QI:464|-1|0|1|-1|1|1|0|150; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=9e-46) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G43660.1 (e_value=7e-47) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr3:15565332-15565928 FORWARD LENGTH=198;; (*ITAG) Solyc04g051180.1.1 (e_value=1e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:49090686-49091183 transcript_region:SL2.40ch04:49090686..49091183- functional_description:"Integral membrane protein (AHRD V1 ***- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbC23522457g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|67; (*SWP) sp|Q10233|RPC2_SCHPO (e_value=6e-31) DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1;; (*TAIR) AT5G45140.1 (e_value=2e-39) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00019391g0012.1 protein AED:0.09 eAED:0.09 QI:72|0.88|0.9|1|0.88|1|10|207|369; (*TAIR) AT4G34660.1 (e_value=0.0) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=368;; (*ITAG) Solyc07g032110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:35135676-35139982 transcript_region:SL2.40ch07:35135676..35139982- go_terms:GO:0030276 functional_description:"Clathrin binding protein (AHRD V1 **-* B6STF7_MAIZE); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00019391g0010.1 protein AED:0.14 eAED:0.45 QI:0|0|0|1|0|0|2|0|202; (*SWP) sp|P93312|YMF16_ARATH (e_value=5e-24) Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2;; (*ITAG) ATMG00570.1 (e_value=5e-27) | Symbols: ORFX | Sec-independent periplasmic protein translocase | chrM:157491-158351 FORWARD LENGTH=286;; (*ITAG) Solyc10g062070.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:54630924-54631199 transcript_region:SL2.40ch10:54630924..54631199+ functional_description:"Transport membrane protein (Fragment) (AHRD V1 **-- D5I3F6_CUCPE)"; NbS00019391g0011.1 protein AED:0.28 eAED:0.77 QI:64|0|0|0.66|0|0|3|0|108 NbS00000463g0114.1 protein AED:0.20 eAED:0.20 QI:229|0.86|0.87|0.93|0.8|0.81|16|0|534 NbS00000463g0115.1 protein AED:0.12 eAED:0.12 QI:0|0.57|0.5|1|0.71|0.62|8|0|774 NbS00000463g0123.1 protein AED:0.12 eAED:0.28 QI:57|0|0|1|0.5|0.33|3|0|362 NbS00000463g0117.1 protein AED:0.36 eAED:0.43 QI:0|0.25|0.11|1|0.37|0.44|9|0|388 NbS00000463g0120.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|135 NbS00016864g0013.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.85|1|1|1|7|192|487; (*SWP) sp|Q6NPN3|C3H58_ARATH (e_value=5e-129) Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1;; (*TAIR) AT5G18550.1 (e_value=3e-130) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:6160515-6162729 FORWARD LENGTH=465;; (*ITAG) Solyc01g067550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68690543-68697003 transcript_region:SL2.40ch01:68690543..68697003- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 58 (AHRD V1 ***- C3H58_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00016864g0003.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|346; (*SWP) sp|Q6J9Q2|ERF86_ARATH (e_value=2e-46) Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2;; (*TAIR) AT5G18560.1 (e_value=2e-47) | Symbols: PUCHI | Integrase-type DNA-binding superfamily protein | chr5:6164859-6165905 REVERSE LENGTH=348;; (*ITAG) Solyc01g067540.1.1 (e_value=4e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:68687673-68688638 transcript_region:SL2.40ch01:68687673..68688638+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 *-*- C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00016864g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.57|1|0.83|0.71|7|535|484; (*SWP) sp|Q67SC6|OBG_SYMTH (e_value=3e-89) GTPase obg OS=Symbiobacterium thermophilum GN=obg PE=3 SV=1;; (*TAIR) AT5G18570.1 (e_value=0.0) | Symbols: EMB269, ATOBGC, CPSAR1 | GTP1/OBG family protein | chr5:6171839-6174823 REVERSE LENGTH=681;; (*ITAG) Solyc01g067530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68662411-68673307 transcript_region:SL2.40ch01:68662411..68673307+ go_terms:GO:0005525,GO:0000166,GO:0005622 functional_description:"GTPase obg (AHRD V1 ***- D5XBC9_THEPJ); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0005525,GO:0000166,GO:0005622 NbS00026136g0015.1 protein AED:0.02 eAED:0.08 QI:0|0|0|0.33|1|1|3|0|164; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=9e-16) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08520.1 (e_value=4e-56) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298;; (*ITAG) Solyc04g008870.2.1 (e_value=1e-51) genomic_reference:SL2.40ch04 gene_region:2492193-2494187 transcript_region:SL2.40ch04:2492193..2494187+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00026136g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|152; (*TAIR) AT5G08520.1 (e_value=5e-39) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298;; (*ITAG) Solyc04g008870.2.1 (e_value=8e-43) genomic_reference:SL2.40ch04 gene_region:2492193-2494187 transcript_region:SL2.40ch04:2492193..2494187+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00026136g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|480; (*SWP) sp|O04659|PP398_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2;; (*TAIR) AT5G27110.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9538572-9540647 REVERSE LENGTH=691;; (*ITAG) Solyc02g011680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:4611745-4614036 transcript_region:SL2.40ch02:4611745..4614036+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M697_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00026136g0014.1 protein AED:0.28 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|218; (*ITAG) Solyc09g056330.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:44209102-44209840 transcript_region:SL2.40ch09:44209102..44209840- functional_description:"Unknown Protein (AHRD V1)"; NbS00026136g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|172; (*SWP) sp|O04659|PP398_ARATH (e_value=6e-32) Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2;; (*TAIR) AT5G27110.1 (e_value=4e-33) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9538572-9540647 REVERSE LENGTH=691;; (*ITAG) Solyc02g011680.2.1 (e_value=3e-69) genomic_reference:SL2.40ch02 gene_region:4611745-4614036 transcript_region:SL2.40ch02:4611745..4614036+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M697_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00026136g0005.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|153; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-21) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=2e-22) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=3e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00026136g0019.1 protein AED:0.31 eAED:0.34 QI:18|0|0|1|0|0|2|0|134; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=4e-34) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-30) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=4e-34) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00035554g0010.1 protein AED:0.03 eAED:0.03 QI:34|0.77|0.6|1|0.44|0.5|10|0|1063; (*ITAG) Solyc06g048470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27602915-27608583 transcript_region:SL2.40ch06:27602915..27608583- functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 *--- Q7GDB1_ARATH)"; NbS00036257g0003.1 protein AED:0.15 eAED:0.15 QI:724|1|1|1|0.57|0.5|8|235|830; (*SWP) sp|Q9FYG2|CMTA4_ARATH (e_value=2e-173) Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1;; (*TAIR) AT1G67310.1 (e_value=2e-174) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr1:25198182-25203126 REVERSE LENGTH=1016;; (*ITAG) Solyc12g035520.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25868916-25893758 transcript_region:SL2.40ch12:25868916..25893758+ go_terms:GO:0005634 functional_description:"Calmodulin-binding transcription activator 1 (AHRD V1 *-*- Q0WQF9_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0005634 NbS00036257g0013.1 protein AED:0.17 eAED:0.18 QI:0|0.90|0.66|1|1|1|12|0|1220; (*SWP) sp|Q8LL04|CPL3_ARATH (e_value=0.0) RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2;; (*TAIR) AT2G33540.1 (e_value=0.0) | Symbols: CPL3, ATCPL3 | C-terminal domain phosphatase-like 3 | chr2:14204081-14208797 REVERSE LENGTH=1241;; (*ITAG) Solyc12g063050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54319603-54324915 transcript_region:SL2.40ch12:54319603..54324915+ go_terms:GO:0005634,GO:0005737,GO:0005622 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 3 (AHRD V1 ***- CPL3_ARATH); contains Interpro domain(s) IPR011947 FCP1-like phosphatase, phosphatase domain "; GO:0005634,GO:0005737,GO:0005622 NbS00036257g0005.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|63; (*SWP) sp|Q9M9P0|EXP13_ARATH (e_value=5e-21) Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2;; (*TAIR) AT3G03220.1 (e_value=4e-22) | Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 | expansin A13 | chr3:742655-743975 REVERSE LENGTH=266;; (*ITAG) Solyc02g081210.2.1 (e_value=3e-25) genomic_reference:SL2.40ch02 gene_region:39837699-39840600 transcript_region:SL2.40ch02:39837699..39840600+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP33_SOLLC); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00053854g0003.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|1|1|5|0|311; (*SWP) sp|Q9FMY5|U2AFB_ARATH (e_value=7e-115) Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=5e-116) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc11g066830.1.1 (e_value=5e-166) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00055461g0003.1 protein AED:0.24 eAED:0.25 QI:0|1|0|1|1|1|2|0|285; (*SWP) sp|O80361|RK4_TOBAC (e_value=3e-155) 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1;; (*TAIR) AT1G07320.2 (e_value=4e-96) | Symbols: RPL4 | ribosomal protein L4 | chr1:2249190-2250189 FORWARD LENGTH=280;; (*ITAG) Solyc07g061900.2.1 (e_value=7e-131) genomic_reference:SL2.40ch07 gene_region:62014111-62015965 transcript_region:SL2.40ch07:62014111..62015965+ go_terms:GO:0008266,GO:0005515 functional_description:"50S ribosomal protein L4 (AHRD V1 ***- B6TG27_MAIZE); contains Interpro domain(s) IPR015498 Ribosomal protein L4 "; GO:0008266,GO:0005515 NbS00010711g0003.1 protein AED:0.20 eAED:0.20 QI:256|0.25|0.8|0.8|0.75|0.6|5|601|157; (*ITAG) Solyc03g114360.2.1 (e_value=2e-18) genomic_reference:SL2.40ch03 gene_region:58422049-58424255 transcript_region:SL2.40ch03:58422049..58424255- go_terms:GO:0016042,GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0016042,GO:0003950 NbS00030742g0014.1 protein AED:0.29 eAED:0.30 QI:0|0.57|0.5|1|0.42|0.62|8|0|331; (*SWP) sp|Q5C9L6|CNMT_THLFG (e_value=7e-90) (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*TAIR) AT4G33110.2 (e_value=4e-141) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:15972497-15974531 REVERSE LENGTH=355;; (*ITAG) Solyc08g062610.2.1 (e_value=2e-180) genomic_reference:SL2.40ch08 gene_region:48777300-48780554 transcript_region:SL2.40ch08:48777300..48780554+ go_terms:GO:0005515,GO:0008168 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 ***- A9ASG7_BURM1); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0005515,GO:0008168 NbS00030742g0012.1 protein AED:0.27 eAED:0.42 QI:0|0|0|1|0|0.4|5|0|304; (*SWP) sp|P09976|YCF2_TOBAC (e_value=1e-59) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=3e-43) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=6e-58) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00030742g0010.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|1|1|3|0|129; (*SWP) sp|A0A335|PSAA_COFAR (e_value=1e-29) Photosystem I P700 chlorophyll a apoprotein A1 OS=Coffea arabica GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=1e-30) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc10g017890.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6075874-6078763 transcript_region:SL2.40ch10:6075874..6078763+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein (AHRD V1 ***- B9RL07_RICCO); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00030742g0013.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|219; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=3e-96) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=9e-88) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=7e-95) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbC23587153g0001.1 protein AED:0.09 eAED:0.09 QI:30|1|0|1|0|0|2|0|40; (*TAIR) AT3G62010.1 (e_value=3e-17) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254;; (*ITAG) Solyc01g068600.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:70191075-70197230 transcript_region:SL2.40ch01:70191075..70197230+ functional_description:"Paladin-like protein (AHRD V1 **-- D0NS27_PHYIN)"; NbS00024749g0001.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|3|0|177; (*TAIR) AT2G37730.1 (e_value=2e-55) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00023488g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|1|1|3|0|604; (*SWP) sp|Q5A1Z5|ATG13_CANAL (e_value=8e-15) Autophagy-related protein 13 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ATG13 PE=3 SV=1;; (*TAIR) AT3G49590.1 (e_value=2e-141) | Symbols: | Autophagy-related protein 13 | chr3:18377892-18380104 FORWARD LENGTH=603;; (*ITAG) Solyc03g096790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52577946-52584548 transcript_region:SL2.40ch03:52577946..52584548+ functional_description:"Autophagy-related protein 13 (AHRD V1 *-*- C1GRW0_PARBA); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 "; NbS00023488g0006.1 protein AED:0.68 eAED:0.69 QI:0|0|0|0.33|1|0.33|3|0|126; (*TAIR) AT3G49590.1 (e_value=1e-15) | Symbols: | Autophagy-related protein 13 | chr3:18377892-18380104 FORWARD LENGTH=603;; (*ITAG) Solyc03g096790.2.1 (e_value=7e-35) genomic_reference:SL2.40ch03 gene_region:52577946-52584548 transcript_region:SL2.40ch03:52577946..52584548+ functional_description:"Autophagy-related protein 13 (AHRD V1 *-*- C1GRW0_PARBA); contains Interpro domain(s) IPR018731 Autophagy-related protein 13 "; NbS00061524g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|100; (*SWP) sp|Q93Z27|CML45_ARATH (e_value=4e-25) Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1;; (*TAIR) AT5G39670.1 (e_value=3e-26) | Symbols: | Calcium-binding EF-hand family protein | chr5:15883270-15883884 FORWARD LENGTH=204;; (*ITAG) Solyc02g088090.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44857193-44857738 transcript_region:SL2.40ch02:44857193..44857738+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00012791g0003.1 protein AED:0.04 eAED:0.04 QI:428|1|1|1|0.70|0.77|18|202|2152; (*SWP) sp|O94915|FRYL_HUMAN (e_value=1e-49) Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2;; (*TAIR) AT5G15680.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:5101188-5110793 REVERSE LENGTH=2153;; (*ITAG) Solyc03g046450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16777714-16804857 transcript_region:SL2.40ch03:16777714..16804857- go_terms:GO:0005488 functional_description:"Cell morphogenesis protein (AHRD V1 *--- C0NPN9_AJECG); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00026113g0018.1 protein AED:0.07 eAED:0.07 QI:77|0.75|0.8|1|0.5|0.6|5|662|218; (*TAIR) AT3G54260.1 (e_value=6e-85) | Symbols: TBL36 | TRICHOME BIREFRINGENCE-LIKE 36 | chr3:20085097-20086745 REVERSE LENGTH=379;; (*ITAG) Solyc11g006990.1.1 (e_value=5e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1487075-1489640 transcript_region:SL2.40ch11:1487075..1489640- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026113g0014.1 protein AED:0.15 eAED:0.15 QI:213|0.76|0.72|0.94|0.88|0.77|18|0|1328; (*TAIR) AT5G22450.1 (e_value=2e-159) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7437145-7442856 REVERSE LENGTH=1154;; (*ITAG) Solyc11g006960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1458731-1469368 transcript_region:SL2.40ch11:1458731..1469368- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00026113g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|186; (*SWP) sp|Q9SR72|GL32_ARATH (e_value=8e-65) Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1;; (*TAIR) AT3G10080.1 (e_value=6e-66) | Symbols: | RmlC-like cupins superfamily protein | chr3:3107476-3108159 REVERSE LENGTH=227;; (*ITAG) Solyc11g006980.1.1 (e_value=7e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1485191-1485829 transcript_region:SL2.40ch11:1485191..1485829+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 18 (AHRD V1 ***- C7S8D2_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00026113g0004.1 protein AED:0.34 eAED:0.34 QI:273|0.75|0.8|1|0.75|0.6|5|0|256; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=7e-127) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=5e-128) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=2e-166) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00053639g0013.1 protein AED:0.07 eAED:0.07 QI:85|1|1|1|1|1|2|142|752; (*SWP) sp|P14233|TGA1B_TOBAC (e_value=2e-59) TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment) OS=Nicotiana tabacum GN=TGA1B PE=2 SV=1;; (*TAIR) AT2G40950.1 (e_value=1e-130) | Symbols: BZIP17 | Basic-leucine zipper (bZIP) transcription factor family protein | chr2:17087823-17090326 REVERSE LENGTH=721;; (*ITAG) Solyc10g078290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59445485-59447849 transcript_region:SL2.40ch10:59445485..59447849- go_terms:GO:0006355 functional_description:"BZIP family transcription factor (Fragment) (AHRD V1 *-*- Q677A7_HYAOR); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00053639g0018.1 protein AED:0.36 eAED:0.36 QI:0|1|0.9|1|0.66|0.8|10|293|514; (*SWP) sp|Q6NKX5|POT1B_ARATH (e_value=3e-100) Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B PE=1 SV=1;; (*TAIR) AT5G06310.1 (e_value=2e-101) | Symbols: AtPOT1b | Nucleic acid-binding, OB-fold-like protein | chr5:1928468-1930795 FORWARD LENGTH=454;; (*ITAG) Solyc02g070300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34660820-34669876 transcript_region:SL2.40ch02:34660820..34669876+ go_terms:GO:0000784 functional_description:"Protection of telomeres 1 protein (AHRD V1 ***- B7T1K5_SOLTU); contains Interpro domain(s) IPR011564 Telomere end binding protein "; GO:0000784 NbS00053639g0015.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|133; (*SWP) sp|P49211|RL321_ARATH (e_value=1e-81) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=7e-83) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "; GO:0003735,GO:0005515 NbS00053639g0020.1 protein AED:0.12 eAED:0.15 QI:0|0.5|0.66|1|0|0|3|563|317; (*SWP) sp|Q9S9V9|FBL23_ARATH (e_value=2e-61) Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1;; (*TAIR) AT4G05460.1 (e_value=1e-55) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g013820.2.1 (e_value=3e-85) genomic_reference:SL2.40ch08 gene_region:3170642-3174481 transcript_region:SL2.40ch08:3170642..3174481- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00009632g0001.1 protein AED:0.40 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|126; (*ITAG) Solyc06g067980.2.1 (e_value=4e-35) genomic_reference:SL2.40ch06 gene_region:38525976-38526697 transcript_region:SL2.40ch06:38525976..38526697+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009632g0008.1 protein AED:0.32 eAED:0.34 QI:253|0.66|0.6|1|0.66|0.6|10|0|447; (*SWP) sp|B5X8M4|BRCC3_SALSA (e_value=5e-48) Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1;; (*TAIR) AT3G06820.2 (e_value=2e-138) | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family protein | chr3:2151027-2153264 REVERSE LENGTH=405;; (*ITAG) Solyc06g067990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38527501-38536182 transcript_region:SL2.40ch06:38527501..38536182- go_terms:GO:0031593 functional_description:"Lys-63-specific deubiquitinase BRCC36 (AHRD V1 *--- BRCC3_XENLA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0031593 NbS00009632g0113.1 protein AED:0.08 eAED:0.12 QI:41|0.8|0.66|1|0.2|0.16|6|0|282 NbS00009632g0115.1 protein AED:0.23 eAED:0.23 QI:0|0.77|0.6|0.9|0.33|0.6|10|0|382 NbS00009632g0114.1 protein AED:0.34 eAED:0.37 QI:24|0.75|0.4|1|0.5|0.4|5|0|141 NbS00058772g0004.1 protein AED:0.21 eAED:0.21 QI:152|0.66|0.85|1|0.33|0.57|7|279|397; (*TAIR) AT2G25270.1 (e_value=8e-62) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:10759779-10762358 FORWARD LENGTH=545;; (*ITAG) Solyc08g041710.2.1 (e_value=4e-97) genomic_reference:SL2.40ch08 gene_region:26805588-26812631 transcript_region:SL2.40ch08:26805588..26812631- functional_description:"Unknown Protein (AHRD V1)"; NbS00015915g0006.1 protein AED:0.22 eAED:0.22 QI:199|0.66|0.5|1|1|1|4|0|359; (*TAIR) AT2G44850.2 (e_value=1e-118) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); Has 106 Blast hits to 106 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18499770-18500823 FORWARD LENGTH=319;; (*ITAG) Solyc01g090380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75841446-75843956 transcript_region:SL2.40ch01:75841446..75843956+ functional_description:"Os02g0655100 protein (Fragment) (AHRD V1 ***- Q0DZ09_ORYSJ); contains Interpro domain(s) IPR018881 Uncharacterised protein family UPF0565 "; NbS00051538g0006.1 protein AED:0.15 eAED:0.15 QI:52|0.91|0.91|1|0.65|0.70|24|1596|1050; (*SWP) sp|Q9F234|AGL2_BACTQ (e_value=5e-140) Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1;; (*TAIR) AT3G23640.2 (e_value=0.0) | Symbols: HGL1 | heteroglycan glucosidase 1 | chr3:8502355-8509358 FORWARD LENGTH=991;; (*ITAG) Solyc08g075530.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56858251-56874699 transcript_region:SL2.40ch08:56858251..56874699+ go_terms:GO:0004558 functional_description:"Alpha glucosidase-like protein (AHRD V1 **** Q93Y12_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00061023g0001.1 protein AED:0.10 eAED:0.10 QI:78|0.75|0.6|0.8|0.75|0.6|5|760|111; (*ITAG) Solyc09g015930.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:11381642-11399733 transcript_region:SL2.40ch09:11381642..11399733+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** D3TRA6_GLOMM); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00003394g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|1|1|2|0|155 NbS00003394g0003.1 protein AED:0.25 eAED:0.41 QI:0|0|0|0.66|1|1|3|0|92; (*ITAG) Solyc00g100880.2.1 (e_value=3e-43) genomic_reference:SL2.40ch00 gene_region:15777138-15778282 transcript_region:SL2.40ch00:15777138..15778282+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00023171g0010.1 protein AED:0.28 eAED:0.28 QI:265|0.75|1|1|0.87|1|9|273|189; (*SWP) sp|Q0WTY4|VPS2B_ARATH (e_value=3e-83) Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2;; (*TAIR) AT5G44560.1 (e_value=3e-84) | Symbols: VPS2.2 | SNF7 family protein | chr5:17946081-17948222 FORWARD LENGTH=222;; (*ITAG) Solyc02g069680.2.1 (e_value=2e-108) genomic_reference:SL2.40ch02 gene_region:34096946-34101392 transcript_region:SL2.40ch02:34096946..34101392+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6TQT7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00023171g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|560; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-114) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT5G44400.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr5:17886365-17888071 REVERSE LENGTH=537;; (*ITAG) Solyc02g069690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34101607-34103250 transcript_region:SL2.40ch02:34101607..34103250- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH5_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00023171g0005.1 protein AED:0.35 eAED:0.38 QI:0|0|0|0.71|1|1|7|0|623; (*SWP) sp|Q9SYG9|CCX4_ARATH (e_value=0.0) Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1;; (*TAIR) AT1G54115.1 (e_value=0.0) | Symbols: ATCCX4, CCX4 | cation calcium exchanger 4 | chr1:20202118-20204052 FORWARD LENGTH=644;; (*ITAG) Solyc02g069710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00000796g0016.1 protein AED:0.06 eAED:0.06 QI:223|1|0.9|1|1|0.9|10|0|748; (*SWP) sp|Q9FGI1|LTN1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=1;; (*TAIR) AT5G58410.1 (e_value=0.0) | Symbols: | HEAT/U-box domain-containing protein | chr5:23609663-23617343 FORWARD LENGTH=1873;; (*ITAG) Solyc09g055260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:33958452-33973931 transcript_region:SL2.40ch09:33958452..33973931- go_terms:GO:0008270,GO:0005488 functional_description:"RING zinc finger-containing protein (AHRD V1 *--- D3BGF4_POLPA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00000796g0017.1 protein AED:0.10 eAED:0.11 QI:0|0.77|0.7|1|0.44|0.3|10|688|1208; (*SWP) sp|Q9FGI1|LTN1_ARATH (e_value=0.0) E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana GN=At5g58410 PE=3 SV=1;; (*TAIR) AT5G58410.1 (e_value=0.0) | Symbols: | HEAT/U-box domain-containing protein | chr5:23609663-23617343 FORWARD LENGTH=1873;; (*ITAG) Solyc09g055260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:33958452-33973931 transcript_region:SL2.40ch09:33958452..33973931- go_terms:GO:0008270,GO:0005488 functional_description:"RING zinc finger-containing protein (AHRD V1 *--- D3BGF4_POLPA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00000796g0012.1 protein AED:0.21 eAED:0.21 QI:93|0.75|0.66|0.88|0.62|0.88|9|209|236; (*SWP) sp|Q9SP02|CP20A_ARATH (e_value=2e-103) Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1;; (*TAIR) AT5G58710.1 (e_value=1e-104) | Symbols: ROC7 | rotamase CYP 7 | chr5:23717840-23719495 FORWARD LENGTH=204;; (*ITAG) Solyc06g076970.2.1 (e_value=6e-110) genomic_reference:SL2.40ch06 gene_region:44223388-44227200 transcript_region:SL2.40ch06:44223388..44227200- go_terms:GO:0051082,GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **** B2BF99_TOBAC); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0051082,GO:0003755 NbS00004316g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0.5|0.5|1|1|2|149|147 NbS00012404g0004.1 protein AED:0.28 eAED:0.28 QI:0|1|0.75|1|0.66|0.25|4|0|217; (*SWP) sp|Q9LFV3|Y5157_ARATH (e_value=2e-100) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1;; (*TAIR) AT5G15730.1 (e_value=9e-102) | Symbols: CRLK2, AtCRLK2 | Protein kinase superfamily protein | chr5:5131284-5133046 FORWARD LENGTH=434;; (*ITAG) Solyc02g089290.2.1 (e_value=1e-147) genomic_reference:SL2.40ch02 gene_region:45733900-45737882 transcript_region:SL2.40ch02:45733900..45737882- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / kinase/ protein serine / threonine kinase (AHRD V1 **** C5DB47_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00031485g0007.1 protein AED:0.11 eAED:0.11 QI:763|1|1|1|0.66|0.42|7|1326|266; (*TAIR) AT3G17450.1 (e_value=3e-85) | Symbols: | hAT dimerisation domain-containing protein | chr3:5972793-5975684 REVERSE LENGTH=877;; (*ITAG) Solyc09g005670.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:452487-455897 transcript_region:SL2.40ch09:452487..455897- go_terms:GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 ***- Q10BC8_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0046983 NbS00031485g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.45|0.63|0.9|0.90|11|0|430; (*TAIR) AT1G28760.1 (e_value=2e-83) | Symbols: | Uncharacterized conserved protein (DUF2215) | chr1:10103158-10104588 FORWARD LENGTH=476;; (*ITAG) Solyc01g057090.2.1 (e_value=1e-149) genomic_reference:SL2.40ch01 gene_region:51248321-51270797 transcript_region:SL2.40ch01:51248321..51270797- functional_description:"Rhodopsin-like receptor (AHRD V1 ***- B6TUA3_MAIZE); contains Interpro domain(s) IPR019358 Protein of unknown function DUF2215 "; NbS00028405g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.33|3|265|406; (*TAIR) AT1G10020.1 (e_value=1e-111) | Symbols: | Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461;; (*ITAG) Solyc01g106690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86223502-86225341 transcript_region:SL2.40ch01:86223502..86225341- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00028405g0002.1 protein AED:0.16 eAED:0.17 QI:83|1|0.5|1|0|0.5|2|0|523; (*TAIR) AT2G22795.1 (e_value=5e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 799854 Blast hits to 188815 proteins in 4452 species: Archae - 4529; Bacteria - 144236; Metazoa - 287749; Fungi - 87083; Plants - 43826; Viruses - 3662; Other Eukaryotes - 228769 (source: NCBI BLink). | chr2:9697380-9699584 REVERSE LENGTH=734;; (*ITAG) Solyc01g106680.2.1 (e_value=1e-135) genomic_reference:SL2.40ch01 gene_region:86218643-86220652 transcript_region:SL2.40ch01:86218643..86220652+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056122g0016.1 protein AED:0.09 eAED:0.09 QI:296|0.83|0.84|1|0.25|0.38|13|159|433; (*SWP) sp|Q2QQ96|CCA21_ORYSJ (e_value=2e-147) Cyclin-A2-1 OS=Oryza sativa subsp. japonica GN=CYCA2-1 PE=2 SV=1;; (*TAIR) AT1G80370.1 (e_value=3e-147) | Symbols: CYCA2;4 | Cyclin A2;4 | chr1:30214694-30216861 FORWARD LENGTH=461;; (*ITAG) Solyc03g120440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62880005-62884582 transcript_region:SL2.40ch03:62880005..62884582- go_terms:GO:0016538 functional_description:"Cyclin-dependent protein kinase regulator-like protein (AHRD V1 **** Q2V5Z8_BRACM); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0016538 NbS00056122g0017.1 protein AED:0.18 eAED:0.18 QI:212|1|0.91|1|1|1|12|420|454; (*SWP) sp|Q944I4|GLYK_ARATH (e_value=0.0) D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2;; (*TAIR) AT1G80380.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30217332-30219784 FORWARD LENGTH=456;; (*ITAG) Solyc03g120430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62875286-62878923 transcript_region:SL2.40ch03:62875286..62878923- go_terms:GO:0008887 functional_description:"Glycerate kinase (AHRD V1 **** C1DYY5_9CHLO)"; GO:0008887 NbS00056122g0014.1 protein AED:0.31 eAED:0.31 QI:0|1|0.85|1|0.5|0.71|7|0|246; (*SWP) sp|O67781|AAT_AQUAE (e_value=1e-28) Aspartate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=aspC PE=3 SV=1;; (*TAIR) AT1G80360.1 (e_value=6e-142) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:30208736-30210643 REVERSE LENGTH=394;; (*ITAG) Solyc03g120450.2.1 (e_value=9e-178) genomic_reference:SL2.40ch03 gene_region:62886665-62893048 transcript_region:SL2.40ch03:62886665..62893048- go_terms:GO:0009058,GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- Q39Q29_GEOMG); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00056122g0004.1 protein AED:0.18 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|277; (*TAIR) AT1G64980.1 (e_value=8e-146) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:24137840-24138619 REVERSE LENGTH=259;; (*ITAG) Solyc06g066800.1.1 (e_value=1e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:38377440-38378177 transcript_region:SL2.40ch06:38377440..38378177+ functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- B8HXH4_CYAP4)"; NbS00055657g0005.1 protein AED:0.34 eAED:0.34 QI:0|0.75|0.55|1|0.25|0.11|9|1255|350; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=2e-93) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=2e-94) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc01g007850.2.1 (e_value=1e-176) genomic_reference:SL2.40ch01 gene_region:2011260-2014397 transcript_region:SL2.40ch01:2011260..2014397+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00055657g0002.1 protein AED:0.44 eAED:0.53 QI:0|0|0|1|1|1|6|0|444; (*SWP) sp|P93005|PP181_ARATH (e_value=2e-65) Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1;; (*TAIR) AT2G33680.1 (e_value=2e-66) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:14249608-14251791 FORWARD LENGTH=727;; (*ITAG) Solyc01g007850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2011260-2014397 transcript_region:SL2.40ch01:2011260..2014397+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00039594g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|312; (*TAIR) AT1G25400.2 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1). | chr1:8911463-8912329 REVERSE LENGTH=288;; (*ITAG) Solyc05g009420.1.1 (e_value=1e-126) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:3585340-3586281 transcript_region:SL2.40ch05:3585340..3586281- functional_description:"Unknown Protein (AHRD V1)"; NbS00039594g0108.1 protein AED:0.04 eAED:0.04 QI:114|0.85|0.87|1|0.71|0.87|8|296|390 NbS00039594g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|308 NbS00039594g0102.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|503 NbS00004848g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|231; (*SWP) sp|O80340|ERF78_ARATH (e_value=4e-27) Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1;; (*TAIR) AT3G15210.1 (e_value=3e-28) | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene responsive element binding factor 4 | chr3:5121472-5122140 FORWARD LENGTH=222;; (*ITAG) Solyc10g009110.1.1 (e_value=3e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00016995g0001.1 protein AED:0.11 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|273; (*TAIR) AT2G44600.1 (e_value=3e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18408845-18409786 FORWARD LENGTH=313;; (*ITAG) Solyc01g088530.2.1 (e_value=3e-86) genomic_reference:SL2.40ch01 gene_region:75065940-75067185 transcript_region:SL2.40ch01:75065940..75067185+ functional_description:"Transposon protein (AHRD V1 ***- B6TXP6_MAIZE)"; NbS00016995g0008.1 protein AED:0.17 eAED:0.17 QI:88|0.75|0.6|1|0.5|0.6|5|322|176; (*SWP) sp|O80501|RAH1B_ARATH (e_value=5e-94) Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1;; (*TAIR) AT2G44610.1 (e_value=4e-95) | Symbols: RAB6, ATRABH1B, ATRAB6A, RAB6A | Ras-related small GTP-binding family protein | chr2:18411778-18413883 REVERSE LENGTH=208;; (*ITAG) Solyc01g088560.2.1 (e_value=7e-99) genomic_reference:SL2.40ch01 gene_region:75096820-75102455 transcript_region:SL2.40ch01:75096820..75102455- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-6A (AHRD V1 ***- B6STE7_MAIZE); contains Interpro domain(s) IPR015600 Rab6-related "; GO:0003924 NbS00047697g0008.1 protein AED:0.04 eAED:0.09 QI:0|0.5|0.2|1|0.5|0.6|5|0|479; (*SWP) sp|P13744|11SB_CUCMA (e_value=3e-128) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=1e-94) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc03g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00012878g0020.1 protein AED:0.04 eAED:0.04 QI:64|1|0.5|1|1|1|4|0|333; (*SWP) sp|Q9M0I2|EXPB3_ARATH (e_value=1e-121) Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2;; (*TAIR) AT4G28250.1 (e_value=8e-123) | Symbols: ATEXPB3, EXPB3, ATHEXP BETA 1.6 | expansin B3 | chr4:14000446-14001945 REVERSE LENGTH=264;; (*ITAG) Solyc07g054170.2.1 (e_value=1e-173) genomic_reference:SL2.40ch07 gene_region:59853346-59856602 transcript_region:SL2.40ch07:59853346..59856602+ go_terms:GO:0005576 functional_description:"Expansin B1 (AHRD V1 ***- C8CC40_RAPSA); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00012878g0027.1 protein AED:0.33 eAED:0.33 QI:0|0.42|0.25|0.62|0.42|0.25|8|0|331; (*SWP) sp|P19446|MDHG_CITLA (e_value=1e-120) Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT5G09660.2 (e_value=7e-121) | Symbols: PMDH2 | peroxisomal NAD-malate dehydrogenase 2 | chr5:2993645-2995169 REVERSE LENGTH=333;; (*ITAG) Solyc01g106480.2.1 (e_value=5e-129) genomic_reference:SL2.40ch01 gene_region:86121621-86124841 transcript_region:SL2.40ch01:86121621..86124841- go_terms:GO:0008152,GO:0005975,GO:0055114 functional_description:"Malate dehydrogenase (AHRD V1 ***- A5BEJ8_VITVI); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0008152,GO:0005975,GO:0055114 NbS00012878g0029.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.5|0.75|0.66|0.75|4|179|71; (*ITAG) Solyc07g053800.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:59538571-59545480 transcript_region:SL2.40ch07:59538571..59545480- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- B0WQV3_CULQU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012878g0023.1 protein AED:0.03 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|430; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=6e-59) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=4e-60) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc07g054180.2.1 (e_value=2e-162) genomic_reference:SL2.40ch07 gene_region:59859331-59862986 transcript_region:SL2.40ch07:59859331..59862986- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00012878g0025.1 protein AED:0.16 eAED:0.16 QI:102|1|1|1|1|1|5|485|399; (*SWP) sp|Q9SDT1|POR_DAUCA (e_value=0.0) Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1;; (*TAIR) AT5G54190.1 (e_value=0.0) | Symbols: PORA | protochlorophyllide oxidoreductase A | chr5:21991183-21992773 REVERSE LENGTH=405;; (*ITAG) Solyc07g054210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59889442-59892645 transcript_region:SL2.40ch07:59889442..59892645- go_terms:GO:0046983 functional_description:"Protochlorophyllide reductase like protein (AHRD V1 ***- Q0WVW0_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0046983 NbS00012878g0032.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|0.5|0.66|3|0|276; (*TAIR) AT5G64510.1 (e_value=3e-75) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=1e-107) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00012878g0008.1 protein AED:0.24 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|404; (*SWP) sp|Q9SKT1|ERF53_ARATH (e_value=7e-51) Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1;; (*TAIR) AT2G20880.1 (e_value=5e-52) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:8986053-8987063 FORWARD LENGTH=336;; (*ITAG) Solyc07g054220.1.1 (e_value=4e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59897642-59898814 transcript_region:SL2.40ch07:59897642..59898814- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00012878g0031.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|79; (*TAIR) AT5G64510.1 (e_value=3e-18) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00012878g0028.1 protein AED:0.18 eAED:0.20 QI:0|0|0|1|0|0|3|0|935; (*SWP) sp|A1A5S1|PRP6_RAT (e_value=0.0) Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2 SV=1;; (*TAIR) AT4G03430.1 (e_value=0.0) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00002017g0012.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|320; (*SWP) sp|O49608|MYB32_ARATH (e_value=3e-65) Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=1e-86) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc07g054840.2.1 (e_value=5e-117) genomic_reference:SL2.40ch07 gene_region:60342649-60343892 transcript_region:SL2.40ch07:60342649..60343892+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q6R077_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00002017g0014.1 protein AED:0.31 eAED:0.31 QI:240|1|0.8|1|1|1|5|0|228; (*SWP) sp|Q02585|UCRIB_TOBAC (e_value=4e-140) Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1;; (*TAIR) AT4G03280.1 (e_value=4e-105) | Symbols: PETC, PGR1 | photosynthetic electron transfer C | chr4:1440314-1441717 FORWARD LENGTH=229;; (*ITAG) Solyc12g005630.1.1 (e_value=6e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:334079-336443 transcript_region:SL2.40ch12:334079..336443- go_terms:GO:0016020,GO:0042651,GO:0031177,GO:0055114 functional_description:"Cytochrome b6-f complex iron-sulfur subunit (AHRD V1 ***- A9PEX3_POPTR); contains Interpro domain(s) IPR005805 Rieske iron-sulphur protein, C-terminal "; GO:0016020,GO:0042651,GO:0031177,GO:0055114 NbS00002017g0016.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0|5|0|862; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=2e-65) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G34930.1 (e_value=8e-108) | Symbols: | disease resistance family protein / LRR family protein | chr2:14737169-14739886 REVERSE LENGTH=905;; (*ITAG) Solyc12g005620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:329993-331726 transcript_region:SL2.40ch12:329993..331726+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00028823g0002.1 protein AED:0.04 eAED:0.33 QI:0|0|0|1|0|0|3|0|117; (*TAIR) AT4G35860.2 (e_value=5e-15) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988587 REVERSE LENGTH=165;; (*ITAG) Solyc06g060210.1.1 (e_value=7e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00028823g0102.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.25|1|1|4|0|159 NbS00056079g0002.1 protein AED:0.02 eAED:0.03 QI:0|-1|1|1|-1|0|1|0|133; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-16) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT1G79800.1 (e_value=5e-22) | Symbols: ENODL7, AtENODL7 | early nodulin-like protein 7 | chr1:30018549-30019217 FORWARD LENGTH=192;; (*ITAG) Solyc10g005940.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:727632-728463 transcript_region:SL2.40ch10:727632..728463- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR02_SOLCI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00027774g0001.1 protein AED:0.12 eAED:0.12 QI:106|0|0.5|1|0|0.5|2|0|497; (*TAIR) AT5G18740.1 (e_value=1e-71) | Symbols: | Domain of unknown function (DUF3444) | chr5:6250060-6251352 FORWARD LENGTH=430;; (*ITAG) Solyc01g098340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80648857-80652917 transcript_region:SL2.40ch01:80648857..80652917+ functional_description:"DNAJ heat shock N-terminal domain-containing protein (Fragment) (AHRD V1 *-*- D7L312_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; NbS00027774g0008.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0.33|3|0|681; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=1e-36) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT1G07390.2 (e_value=1e-56) | Symbols: AtRLP1, RLP1 | receptor like protein 1 | chr1:2270633-2274654 FORWARD LENGTH=913;; (*ITAG) Solyc04g076450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58926722-58928086 transcript_region:SL2.40ch04:58926722..58928086- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00027774g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|117 NbS00022714g0008.1 protein AED:0.14 eAED:0.14 QI:0|1|0.33|1|1|1|3|0|114; (*SWP) sp|O80439|RR31_ARATH (e_value=3e-18) 30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1;; (*TAIR) AT2G38140.1 (e_value=2e-19) | Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980948-15981459 FORWARD LENGTH=118;; (*ITAG) Solyc05g052710.2.1 (e_value=6e-43) genomic_reference:SL2.40ch05 gene_region:62055840-62057432 transcript_region:SL2.40ch05:62055840..62057432+ functional_description:"30S ribosomal protein S31, chloroplastic (AHRD V1 *-*- RR31_ARATH)"; NbS00022714g0007.1 protein AED:0.34 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|124; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=4e-56) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT5G05710.1 (e_value=3e-66) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144;; (*ITAG) Solyc05g052720.1.1 (e_value=2e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62059708-62060151 transcript_region:SL2.40ch05:62059708..62060151- go_terms:GO:0035091 functional_description:"Pleckstrin homology domain containing family A (Phosphoinositide binding specific) member 1 (AHRD V1 **-* Q0IIA5_BOVIN); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00023436g0009.1 protein AED:0.16 eAED:0.16 QI:152|0.91|0.84|1|0.91|0.92|13|287|508; (*TAIR) AT2G40820.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr2:17036768-17039474 REVERSE LENGTH=492;; (*ITAG) Solyc10g078340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59482438-59487279 transcript_region:SL2.40ch10:59482438..59487279- functional_description:"Os03g0364500 protein (Fragment) (AHRD V1 *-*- Q0DRQ2_ORYSJ)"; NbS00023436g0004.1 protein AED:0.03 eAED:0.06 QI:0|0|0|0.75|1|1|4|0|448; (*SWP) sp|Q9SBQ7|METK3_PETHY (e_value=0.0) S-adenosylmethionine synthase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1;; (*TAIR) AT3G17390.1 (e_value=0.0) | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine synthetase family protein | chr3:5952484-5953665 REVERSE LENGTH=393;; (*ITAG) Solyc01g101060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82678819-82681422 transcript_region:SL2.40ch01:82678819..82681422+ go_terms:GO:0006730 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B8LFH4_IPOBA); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0006730 NbS00025311g0009.1 protein AED:0.09 eAED:0.09 QI:284|0.82|0.88|1|0.88|0.77|18|1374|1249; (*SWP) sp|Q6ZCX3|FH6_ORYSJ (e_value=2e-171) Formin-like protein 6 OS=Oryza sativa subsp. japonica GN=FH6 PE=2 SV=2;; (*TAIR) AT5G58160.1 (e_value=5e-171) | Symbols: | actin binding | chr5:23533724-23539465 FORWARD LENGTH=1324;; (*ITAG) Solyc12g010110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3235748-3245807 transcript_region:SL2.40ch12:3235748..3245807+ go_terms:GO:0030036 functional_description:"Formin 2B (AHRD V1 *-*- C7BGM9_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00025311g0010.1 protein AED:0.27 eAED:0.28 QI:243|0.57|0.75|1|0.42|0.37|8|385|542; (*SWP) sp|Q56X72|RTNLS_ARATH (e_value=6e-60) Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2;; (*TAIR) AT5G58000.1 (e_value=5e-61) | Symbols: | Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487;; (*ITAG) Solyc12g010120.1.1 (e_value=2e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3251391-3256639 transcript_region:SL2.40ch12:3251391..3256639+ go_terms:GO:0005783 functional_description:"Reticulon-like protein B21 (AHRD V1 *-*- RTNLS_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00032642g0016.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0|0.33|3|0|321; (*SWP) sp|O22213|CKX1_ARATH (e_value=2e-121) Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1;; (*TAIR) AT2G41510.1 (e_value=2e-122) | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314626-17316861 FORWARD LENGTH=575;; (*ITAG) Solyc04g016430.2.1 (e_value=3e-154) genomic_reference:SL2.40ch04 gene_region:7229849-7232636 transcript_region:SL2.40ch04:7229849..7232636- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 **** C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00032642g0012.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|71 NbS00032642g0015.1 protein AED:0.12 eAED:0.12 QI:149|0.87|0.77|1|1|1|9|463|450; (*SWP) sp|A7RWP6|EIF3E_NEMVE (e_value=6e-167) Eukaryotic translation initiation factor 3 subunit E OS=Nematostella vectensis GN=v1g163572 PE=3 SV=1;; (*TAIR) AT3G57290.1 (e_value=0.0) | Symbols: EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6, INT6 | eukaryotic translation initiation factor 3E | chr3:21196786-21199073 REVERSE LENGTH=441;; (*ITAG) Solyc10g079880.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60673368-60677089 transcript_region:SL2.40ch10:60673368..60677089- functional_description:"Eukaryotic translation initiation factor 3 subunit 6 (AHRD V1 ***- B6TRV3_MAIZE); contains Interpro domain(s) IPR016650 Translation initiation factor 3, subunit 6, eukaryotic "; NbS00032642g0017.1 protein AED:0.44 eAED:0.50 QI:0|0|0|0.14|0.61|0.5|14|0|549; (*ITAG) Solyc06g008150.2.1 (e_value=1e-38) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00012465g0003.1 protein AED:0.30 eAED:0.30 QI:384|1|0.85|1|0.16|0.28|7|0|366; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=1e-99) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT3G09010.1 (e_value=3e-140) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc02g078530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37776215-37780077 transcript_region:SL2.40ch02:37776215..37780077+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00032587g0005.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|336; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=8e-148) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36770.1 (e_value=9e-59) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15415227-15416717 REVERSE LENGTH=496;; (*ITAG) Solyc04g016190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:6942505-6943908 transcript_region:SL2.40ch04:6942505..6943908- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 *-** D7URL8_9LAMI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00032587g0004.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|359; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=9e-146) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=6e-54) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc10g079930.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60702629-60703942 transcript_region:SL2.40ch10:60702629..60703942- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00032587g0013.1 protein AED:0.29 eAED:0.29 QI:169|1|0.85|1|0.5|0.57|7|0|312; (*SWP) sp|Q9SS44|TF2B2_ARATH (e_value=2e-171) Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=2e-172) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60239317-60242457 transcript_region:SL2.40ch10:60239317..60242457- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbC26176493g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|167; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=8e-44) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=4e-45) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc10g051390.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47556796-47557568 transcript_region:SL2.40ch10:47556796..47557568+ go_terms:GO:0008266 functional_description:"RNA-binding glycine-rich protein-1b (AHRD V1 **** Q40427_NICSY); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00016769g0004.1 protein AED:0.00 eAED:0.00 QI:87|0.66|0.75|1|0|0|4|510|197; (*SWP) sp|Q55720|YC49L_SYNY3 (e_value=3e-27) Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0608 PE=3 SV=1;; (*TAIR) AT4G22830.1 (e_value=1e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | chr4:11990296-11991325 REVERSE LENGTH=193;; (*ITAG) Solyc08g079680.2.1 (e_value=1e-82) genomic_reference:SL2.40ch08 gene_region:60327092-60331700 transcript_region:SL2.40ch08:60327092..60331700+ functional_description:"Ycf49 protein (AHRD V1 *--- Q8DIZ4_THEEB); contains Interpro domain(s) IPR019634 Protein of unknown function DUF2499 "; NbS00006017g0012.1 protein AED:0.23 eAED:0.23 QI:605|0.92|0.92|1|0.92|0.85|14|317|524; (*SWP) sp|O24160|TGA21_TOBAC (e_value=0.0) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT3G12250.2 (e_value=3e-155) | Symbols: TGA6, BZIP45 | TGACG motif-binding factor 6 | chr3:3906351-3908583 FORWARD LENGTH=330;; (*ITAG) Solyc10g080770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61293121-61301987 transcript_region:SL2.40ch10:61293121..61301987+ go_terms:GO:0006355 functional_description:"BZIP transcription factor (AHRD V1 ***- Q6IVC2_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00006017g0013.1 protein AED:0.56 eAED:0.56 QI:0|0|0.33|0.66|1|1|3|295|78 NbS00006017g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|419; (*SWP) sp|Q8RY99|RECAM_ARATH (e_value=2e-103) DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana GN=At3g10140 PE=2 SV=1;; (*TAIR) AT3G10140.1 (e_value=2e-104) | Symbols: RECA3 | RECA homolog 3 | chr3:3134984-3137069 FORWARD LENGTH=389;; (*ITAG) Solyc10g079250.1.1 (e_value=4e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60144419-60149387 transcript_region:SL2.40ch10:60144419..60149387- go_terms:GO:0006259,GO:0017111,GO:0006281 functional_description:"Protein recA (AHRD V1 ***- Q0F3T6_9PROT); contains Interpro domain(s) IPR013765 RecA IPR003593 ATPase, AAA+ type, core "; GO:0006259,GO:0017111,GO:0006281 NbS00006017g0011.1 protein AED:0.26 eAED:0.26 QI:259|0.75|0.6|0.8|0.5|0.4|5|0|178; (*SWP) sp|Q9LHK1|NUD16_ARATH (e_value=1e-67) Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1;; (*TAIR) AT3G12600.1 (e_value=9e-69) | Symbols: atnudt16, NUDT16 | nudix hydrolase homolog 16 | chr3:4004809-4005995 FORWARD LENGTH=180;; (*ITAG) Solyc10g080760.1.1 (e_value=2e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61284152-61287917 transcript_region:SL2.40ch10:61284152..61287917+ go_terms:GO:0016787 functional_description:"Hydrolase NUDIX family protein expressed (AHRD V1 ***- Q6ATR4_ORYSJ); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00019325g0012.1 protein AED:0.16 eAED:0.16 QI:281|0.90|0.83|1|0.90|0.83|12|562|757; (*SWP) sp|Q07121|AMO1_ARTS1 (e_value=2e-154) Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc05g013440.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6501962-6511458 transcript_region:SL2.40ch05:6501962..6511458- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00019325g0002.1 protein AED:0.00 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|265; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-15) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G61620.1 (e_value=2e-24) | Symbols: | myb-like transcription factor family protein | chr5:24772383-24773507 FORWARD LENGTH=317;; (*ITAG) Solyc05g013420.1.1 (e_value=4e-38) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6496647-6497204 transcript_region:SL2.40ch05:6496647..6497204+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (AHRD V1 ***- D7MV43_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00019325g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0.14|0.85|1|1|7|192|391; (*SWP) sp|Q94C27|FB84_ARATH (e_value=2e-89) F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1;; (*TAIR) AT1G70590.1 (e_value=1e-90) | Symbols: | F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351;; (*ITAG) Solyc05g013410.2.1 (e_value=8e-130) genomic_reference:SL2.40ch05 gene_region:6480260-6484488 transcript_region:SL2.40ch05:6480260..6484488+ go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *-*- A0L961_MAGSM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00029327g0004.1 protein AED:0.33 eAED:0.34 QI:0|0.33|0.5|1|1|1|4|225|287; (*ITAG) Solyc02g038760.2.1 (e_value=1e-45) genomic_reference:SL2.40ch02 gene_region:22246946-22251700 transcript_region:SL2.40ch02:22246946..22251700+ go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 ***- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00033327g0002.1 protein AED:0.13 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|698; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=0.0) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G03890.1 (e_value=0.0) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650;; (*ITAG) Solyc05g010810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:4987801-4989723 transcript_region:SL2.40ch05:4987801..4989723- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00019955g0005.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.42|0.66|0.71|7|0|221 NbS00019955g0006.1 protein AED:0.69 eAED:0.71 QI:0|0|0|0.66|0.5|0.33|3|0|124 NbS00019955g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|467; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=5e-64) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT2G32460.2 (e_value=2e-68) | Symbols: MYB101, ATMYB101, ATM1 | myb domain protein 101 | chr2:13782419-13784359 REVERSE LENGTH=478;; (*ITAG) Solyc07g052300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58120635-58123894 transcript_region:SL2.40ch07:58120635..58123894+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbC25569765g0001.1 protein AED:0.00 eAED:0.00 QI:169|1|0.5|1|0|0|2|0|71; (*TAIR) AT1G67420.2 (e_value=6e-24) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922;; (*ITAG) Solyc12g035490.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25695633-25699781 transcript_region:SL2.40ch12:25695633..25699781+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase (AHRD V1 **-- B6K5X8_SCHJY); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00016299g0004.1 protein AED:0.61 eAED:0.62 QI:0|0|0|0.28|0.33|0.42|7|0|267; (*TAIR) AT3G07060.1 (e_value=5e-22) | Symbols: emb1974 | NHL domain-containing protein | chr3:2232760-2236913 FORWARD LENGTH=774;; (*ITAG) Solyc09g061380.2.1 (e_value=4e-36) genomic_reference:SL2.40ch09 gene_region:54567185-54585411 transcript_region:SL2.40ch09:54567185..54585411- functional_description:"NHL repeat (AHRD V1 *-*- Q3M6W0_ANAVT); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00016299g0003.1 protein AED:0.45 eAED:1.00 QI:0|0|0|1|0|0|2|0|80 NbS00060974g0004.1 protein AED:0.23 eAED:0.23 QI:454|1|1|1|1|1|2|0|129; (*TAIR) AT3G55350.1 (e_value=1e-26) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406;; (*ITAG) Solyc11g073090.1.1 (e_value=5e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53273840-53274829 transcript_region:SL2.40ch11:53273840..53274829- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00011854g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|0.75|1|1|1|4|0|206; (*SWP) sp|Q9FKC0|R13A4_ARATH (e_value=7e-136) 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1;; (*TAIR) AT5G48760.2 (e_value=6e-137) | Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206;; (*ITAG) Solyc05g053670.2.1 (e_value=3e-149) genomic_reference:SL2.40ch05 gene_region:62873908-62876249 transcript_region:SL2.40ch05:62873908..62876249+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L13a-like protein (AHRD V1 ***- Q3HRW1_SOLTU); contains Interpro domain(s) IPR005755 Ribosomal protein L13, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00012572g0005.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|4|183|517; (*SWP) sp|Q9FUJ1|CKX7_ARATH (e_value=0.0) Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1;; (*TAIR) AT5G21482.1 (e_value=0.0) | Symbols: CKX7, ATCKX5 | cytokinin oxidase 7 | chr5:7226842-7230052 FORWARD LENGTH=524;; (*ITAG) Solyc08g061930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47205921-47209565 transcript_region:SL2.40ch08:47205921..47209565+ go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase (AHRD V1 **** C3VPM8_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00012572g0010.1 protein AED:0.35 eAED:0.42 QI:0|0|0.25|1|0|0|4|0|218; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=1e-47) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=5e-43) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=1e-47) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00012572g0006.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|183; (*SWP) sp|A6MMG4|RK2A_CHLSC (e_value=1e-45) 50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=4e-45) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=4e-44) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00012572g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.75|0|0|4|0|167; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=4e-43) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-41) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-42) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00012572g0007.1 protein AED:0.23 eAED:0.36 QI:0|0|0|1|0|0|2|0|142; (*SWP) sp|Q589A5|NU2C_SILLA (e_value=6e-16) NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Silene latifolia GN=ndhB PE=3 SV=2;; (*ITAG) ATCG01250.1 (e_value=1e-14) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00012572g0011.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|71 NbS00029017g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.77|1|0.87|0.88|9|549|417; (*SWP) sp|O81027|HMGCL_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2;; (*TAIR) AT2G26800.1 (e_value=0.0) | Symbols: | Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433;; (*ITAG) Solyc01g080170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71896234-71905652 transcript_region:SL2.40ch01:71896234..71905652+ go_terms:GO:0008152,GO:0003824 functional_description:"Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase "; GO:0008152,GO:0003824 NbS00030452g0004.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|0|0|2|0|66 NbS00018015g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.62|0.66|1|1|1|9|256|624; (*SWP) sp|Q86HW6|Y6461_DICDI (e_value=1e-46) Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461 PE=3 SV=1;; (*TAIR) AT2G32850.2 (e_value=7e-165) | Symbols: | Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=670;; (*ITAG) Solyc01g074010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70578697-70582804 transcript_region:SL2.40ch01:70578697..70582804- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- C0NU81_AJECG); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003898g0001.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|66; (*SWP) sp|O23310|NFYB3_ARATH (e_value=3e-35) Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1;; (*TAIR) AT4G14540.1 (e_value=2e-36) | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161;; (*ITAG) Solyc04g054150.1.1 (e_value=7e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50976969-50977535 transcript_region:SL2.40ch04:50976969..50977535+ go_terms:GO:0005515,GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005515,GO:0003700 NbS00011128g0009.1 protein AED:0.07 eAED:0.07 QI:10|0.75|0.4|1|0.75|0.6|5|0|281; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=1e-105) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=3e-160) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=4e-177) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00011128g0008.1 protein AED:0.13 eAED:0.13 QI:68|0.86|0.87|1|0.6|0.68|16|403|468; (*SWP) sp|B3H6K1|Y4791_ARATH (e_value=1e-117) Uncharacterized protein At4g17910 OS=Arabidopsis thaliana GN=At4g17910 PE=2 SV=2;; (*TAIR) AT4G17910.1 (e_value=8e-119) | Symbols: | transferases, transferring acyl groups | chr4:9951322-9953689 REVERSE LENGTH=434;; (*ITAG) Solyc08g076810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57876899-57889537 transcript_region:SL2.40ch08:57876899..57889537+ go_terms:GO:0005515,GO:0032216 functional_description:"GPI-anchored wall transfer protein 1 (AHRD V1 ***- C4JY68_UNCRE); contains Interpro domain(s) IPR009447 GWT1 "; GO:0005515,GO:0032216 NbS00038101g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|449; (*SWP) sp|Q94C25|Y5005_ARATH (e_value=7e-144) Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1;; (*TAIR) AT5G20050.1 (e_value=5e-145) | Symbols: | Protein kinase superfamily protein | chr5:6774381-6775739 FORWARD LENGTH=452;; (*ITAG) Solyc06g008890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2833412-2835080 transcript_region:SL2.40ch06:2833412..2835080+ go_terms:GO:0005515,GO:0004674 functional_description:"S-receptor kinase -like protein (AHRD V1 **** O49361_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00038101g0002.1 protein AED:0.23 eAED:0.23 QI:628|0.75|0.8|1|0.75|0.6|5|285|173; (*SWP) sp|Q40153|LE14B_LITER (e_value=1e-85) LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1;; (*TAIR) AT4G03020.2 (e_value=4e-90) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493;; (*ITAG) Solyc06g008880.2.1 (e_value=7e-101) genomic_reference:SL2.40ch06 gene_region:2824969-2831802 transcript_region:SL2.40ch06:2824969..2831802+ go_terms:GO:0005112,GO:0042923 functional_description:"WD repeat protein 23 (AHRD V1 **-- B0WXG6_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005112,GO:0042923 NbS00020420g0002.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|77; (*ITAG) Solyc06g034130.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:20393296-20394748 transcript_region:SL2.40ch06:20393296..20394748- go_terms:GO:0016042 functional_description:"Root cap protein 3 (Fragment) (AHRD V1 **-- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; GO:0016042 NbS00011333g0003.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|1|1|5|243|879; (*SWP) sp|F4IME2|MSL8_ARATH (e_value=0.0) Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2;; (*TAIR) AT1G78610.1 (e_value=0.0) | Symbols: MSL6 | mechanosensitive channel of small conductance-like 6 | chr1:29569226-29572126 REVERSE LENGTH=856;; (*ITAG) Solyc04g082040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63439571-63444065 transcript_region:SL2.40ch04:63439571..63444065+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 *-*- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00022795g0010.1 protein AED:0.30 eAED:0.30 QI:134|1|1|1|1|1|12|266|633; (*SWP) sp|Q8VYD6|PP374_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana GN=CBSPPR1 PE=2 SV=1;; (*TAIR) AT5G10690.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein | chr5:3374443-3377332 REVERSE LENGTH=580;; (*ITAG) Solyc08g069010.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55300249-55313870 transcript_region:SL2.40ch08:55300249..55313870+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2Z4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022795g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|187; (*SWP) sp|Q40374|PR1_MEDTR (e_value=5e-45) Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1;; (*TAIR) AT4G31470.1 (e_value=3e-61) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:15261746-15262303 REVERSE LENGTH=185;; (*ITAG) Solyc08g068990.1.1 (e_value=7e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55284508-55285815 transcript_region:SL2.40ch08:55284508..55285815- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein 1 (AHRD V1 ***- D5KR57_MUSPR); contains Interpro domain(s) IPR002413 Ves allergen "; GO:0005576 NbS00027207g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0.5|1|1|1|2|352|146; (*SWP) sp|O48528|OP163_ARATH (e_value=7e-68) Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1;; (*TAIR) AT2G42210.2 (e_value=5e-69) | Symbols: ATOEP16-3, OEP16-3 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr2:17590600-17591591 FORWARD LENGTH=173;; (*ITAG) Solyc10g078690.1.1 (e_value=3e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59747948-59751439 transcript_region:SL2.40ch10:59747948..59751439- go_terms:GO:0005743 functional_description:"Mitochondrial protein translocase family (Fragment) (AHRD V1 ***- C1N7T2_MICPS); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00004987g0010.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.5|0.33|3|0|178; (*TAIR) AT1G27990.1 (e_value=5e-63) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9752799-9753919 REVERSE LENGTH=271;; (*ITAG) Solyc05g015890.2.1 (e_value=6e-69) genomic_reference:SL2.40ch05 gene_region:12668873-12669963 transcript_region:SL2.40ch05:12668873..12669963- functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 **-- Q9FHB8_ARATH)"; NbS00022512g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|331; (*SWP) sp|O04017|NAC98_ARATH (e_value=1e-111) Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1;; (*TAIR) AT5G53950.1 (e_value=1e-112) | Symbols: CUC2, ANAC098, ATCUC2 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr5:21901966-21903795 REVERSE LENGTH=375;; (*ITAG) Solyc07g062840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62708889-62711033 transcript_region:SL2.40ch07:62708889..62711033+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1D6_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00022512g0012.1 protein AED:0.29 eAED:0.29 QI:154|0.93|0.88|1|0.87|0.88|17|354|523; (*TAIR) AT3G15180.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:5111952-5115803 FORWARD LENGTH=519;; (*ITAG) Solyc07g062850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62714809-62722725 transcript_region:SL2.40ch07:62714809..62722725+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 ***- Q9LIL7_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00022512g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|77; (*ITAG) Solyc00g019990.1.1 (e_value=2e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:11804753-11804968 transcript_region:SL2.40ch00:11804753..11804968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022512g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|103; (*ITAG) Solyc07g017930.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00022512g0013.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|3|0|95; (*SWP) sp|Q2MIA9|RPOC1_SOLLC (e_value=2e-33) DNA-directed RNA polymerase subunit beta' OS=Solanum lycopersicum GN=rpoC1 PE=3 SV=2;; (*ITAG) ATCG00180.1 (e_value=2e-32) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc01g017470.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23953063-23953488 transcript_region:SL2.40ch01:23953063..23953488+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta' (AHRD V1 ***- RPOC1_SOLLC); contains Interpro domain(s) IPR000722 RNA polymerase, alpha subunit "; GO:0006350 NbS00029919g0006.1 protein AED:0.03 eAED:0.03 QI:223|1|1|1|1|1|4|788|196; (*SWP) sp|O13737|YDR2_SCHPO (e_value=5e-25) Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=2 SV=2;; (*TAIR) AT1G18720.1 (e_value=1e-85) | Symbols: | Protein of unknown function (DUF962) | chr1:6458020-6459658 REVERSE LENGTH=206;; (*ITAG) Solyc03g115860.2.1 (e_value=1e-121) genomic_reference:SL2.40ch03 gene_region:59514994-59518387 transcript_region:SL2.40ch03:59514994..59518387- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum membrane protein YGL010W (AHRD V1 **-- C1BUF1_9MAXI); contains Interpro domain(s) IPR009305 Protein of unknown function DUF962 "; GO:0005515 NbS00029919g0005.1 protein AED:0.04 eAED:0.04 QI:286|1|1|1|1|1|3|228|327; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=5e-127) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=4e-128) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc03g115850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59503502-59505060 transcript_region:SL2.40ch03:59503502..59505060- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00013857g0003.1 protein AED:0.11 eAED:0.20 QI:77|0|0|1|1|0.5|2|0|227; (*SWP) sp|Q9LSG3|GAUT8_ARATH (e_value=5e-128) Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1;; (*TAIR) AT3G25140.1 (e_value=4e-129) | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559;; (*ITAG) Solyc02g089440.2.1 (e_value=1e-156) genomic_reference:SL2.40ch02 gene_region:45843022-45845794 transcript_region:SL2.40ch02:45843022..45845794+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00015978g0002.1 protein AED:0.05 eAED:0.04 QI:0|0.5|0|0.66|1|1|3|1920|204; (*TAIR) AT1G13380.1 (e_value=2e-74) | Symbols: | Protein of unknown function (DUF1218) | chr1:4589218-4590362 REVERSE LENGTH=188;; (*ITAG) Solyc05g009330.2.1 (e_value=6e-103) genomic_reference:SL2.40ch05 gene_region:3477308-3482473 transcript_region:SL2.40ch05:3477308..3482473- functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEX8_SOLPN); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00015978g0008.1 protein AED:0.07 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|274; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=6e-65) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1;; (*TAIR) AT3G02550.1 (e_value=4e-66) | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263;; (*ITAG) Solyc05g009320.2.1 (e_value=5e-109) genomic_reference:SL2.40ch05 gene_region:3454579-3455891 transcript_region:SL2.40ch05:3454579..3455891- functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00028943g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.83|0.71|1|0.66|0.57|7|243|339; (*SWP) sp|P48583|ERD2_CAEEL (e_value=5e-26) ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2;; (*TAIR) AT1G75760.1 (e_value=2e-143) | Symbols: | ER lumen protein retaining receptor family protein | chr1:28446940-28448421 REVERSE LENGTH=272;; (*ITAG) Solyc10g054850.1.1 (e_value=2e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51479979-51484745 transcript_region:SL2.40ch10:51479979..51484745- go_terms:GO:0016021 functional_description:"ER lumen protein retaining receptor family protein (AHRD V1 ***- D7LL09_ARALY); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0016021 NbS00013071g0026.1 protein AED:0.09 eAED:0.09 QI:0|1|0.33|1|1|1|3|0|329; (*SWP) sp|Q9XIV8|PERN1_TOBAC (e_value=4e-170) Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1;; (*TAIR) AT2G41480.1 (e_value=2e-146) | Symbols: | Peroxidase superfamily protein | chr2:17296986-17298729 REVERSE LENGTH=341;; (*ITAG) Solyc01g105070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85115112-85116901 transcript_region:SL2.40ch01:85115112..85116901+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43499_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00013071g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|1|1|4|0|360; (*SWP) sp|Q9XIV8|PERN1_TOBAC (e_value=0.0) Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1;; (*TAIR) AT5G64120.1 (e_value=3e-134) | Symbols: | Peroxidase superfamily protein | chr5:25659551-25660946 REVERSE LENGTH=328;; (*ITAG) Solyc01g105070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85115112-85116901 transcript_region:SL2.40ch01:85115112..85116901+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43499_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00013071g0028.1 protein AED:0.16 eAED:0.16 QI:227|0.9|0.72|1|0.7|0.63|11|0|793; (*SWP) sp|Q339D2|P2C71_ORYSJ (e_value=2e-95) Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1;; (*TAIR) AT4G33500.1 (e_value=2e-79) | Symbols: | Protein phosphatase 2C family protein | chr4:16112835-16116243 REVERSE LENGTH=724;; (*ITAG) Solyc01g105020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85080428-85087099 transcript_region:SL2.40ch01:85080428..85087099- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00013071g0023.1 protein AED:0.23 eAED:0.23 QI:83|1|1|1|1|1|3|705|186; (*SWP) sp|Q8VYI9|NLTL5_ARATH (e_value=2e-43) Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1;; (*TAIR) AT5G64080.1 (e_value=1e-44) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:25645475-25646638 REVERSE LENGTH=182;; (*ITAG) Solyc01g105010.2.1 (e_value=8e-99) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00013071g0021.1 protein AED:0.13 eAED:0.32 QI:0|1|0.5|1|0|0.5|2|464|179; (*ITAG) Solyc01g105060.2.1 (e_value=3e-13) genomic_reference:SL2.40ch01 gene_region:85094784-85097712 transcript_region:SL2.40ch01:85094784..85097712- go_terms:GO:0005737 functional_description:"(3R)-hydroxymyristoyl- (AHRD V1 ***- Q9LX13_ARATH); contains Interpro domain(s) IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ "; GO:0005737 NbS00013071g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|106; (*SWP) sp|P27524|CB4A_SOLLC (e_value=3e-69) Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1;; (*TAIR) AT1G15820.1 (e_value=3e-65) | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258;; (*ITAG) Solyc01g105030.2.1 (e_value=2e-70) genomic_reference:SL2.40ch01 gene_region:85087662-85089049 transcript_region:SL2.40ch01:85087662..85089049+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00013071g0024.1 protein AED:0.19 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|185; (*SWP) sp|P27524|CB4A_SOLLC (e_value=3e-110) Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1;; (*TAIR) AT1G15820.1 (e_value=3e-96) | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446685-5447676 REVERSE LENGTH=258;; (*ITAG) Solyc01g105030.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:85087662-85089049 transcript_region:SL2.40ch01:85087662..85089049+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB12_PETHY); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00008627g0020.1 protein AED:0.15 eAED:0.15 QI:215|1|1|1|1|1|8|320|343; (*TAIR) AT1G29700.1 (e_value=2e-150) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:10385196-10386906 REVERSE LENGTH=350;; (*ITAG) Solyc03g111700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56405682-56409087 transcript_region:SL2.40ch03:56405682..56409087+ functional_description:"Inactivated Zn-dependent hydrolase of the beta-lactamase fold (AHRD V1 ***- B5ILK8_9CHRO)"; NbS00008627g0018.1 protein AED:0.19 eAED:0.19 QI:0|0.85|0.87|1|0.85|0.87|8|348|446; (*SWP) sp|Q0QLE4|DML_EUBBA (e_value=2e-36) 2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1;; (*TAIR) AT2G43180.3 (e_value=3e-130) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953719-17955774 REVERSE LENGTH=478;; (*ITAG) Solyc05g056270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64763836-64771346 transcript_region:SL2.40ch05:64763836..64771346+ go_terms:GO:0008152,GO:0003824 functional_description:"Isocitrate lyase (AHRD V1 *-*- Q2TWG5_ASPOR); contains Interpro domain(s) IPR000918 Isocitrate lyase and phosphorylmutase "; GO:0008152,GO:0003824 NbS00008627g0019.1 protein AED:0.34 eAED:0.34 QI:0|1|0.8|1|0.55|0.7|10|323|424; (*SWP) sp|Q94K73|SYFM_ARATH (e_value=0.0) Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1;; (*TAIR) AT3G58140.1 (e_value=0.0) | Symbols: | phenylalanyl-tRNA synthetase class IIc family protein | chr3:21529988-21532386 REVERSE LENGTH=429;; (*ITAG) Solyc05g056260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64755903-64760321 transcript_region:SL2.40ch05:64755903..64760321- go_terms:GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 *-** Q5N0F1_SYNP6); contains Interpro domain(s) IPR004530 Phenylalanyl-tRNA synthetase, class IIc, mitochondrial "; GO:0004826 NbS00008627g0017.1 protein AED:0.11 eAED:0.11 QI:215|0.5|0.66|1|0.5|0.66|3|478|137; (*SWP) sp|O80800|ACPM2_ARATH (e_value=2e-60) Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1;; (*TAIR) AT1G65290.1 (e_value=2e-61) | Symbols: mtACP2 | mitochondrial acyl carrier protein 2 | chr1:24249088-24250366 REVERSE LENGTH=126;; (*ITAG) Solyc05g056240.2.1 (e_value=1e-77) genomic_reference:SL2.40ch05 gene_region:64745523-64748732 transcript_region:SL2.40ch05:64745523..64748732+ go_terms:GO:0050897 functional_description:"Acyl carrier protein (AHRD V1 ***- Q3HRX1_SOLTU); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0050897 NbS00001169g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.25|1|0|0|4|0|585; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=7e-13) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT4G31980.1 (e_value=6e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | chr4:15464905-15469204 FORWARD LENGTH=680;; (*ITAG) Solyc01g057260.2.1 (e_value=3e-134) genomic_reference:SL2.40ch01 gene_region:53150800-53153577 transcript_region:SL2.40ch01:53150800..53153577+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00001169g0146.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0.33|0.25|4|0|575 NbS00001169g0153.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.4|1|1|1|5|0|341 NbS00001169g0165.1 protein AED:0.26 eAED:0.33 QI:0|0.66|0.4|1|0.55|0.5|10|0|760 NbS00001169g0102.1 protein AED:0.30 eAED:0.34 QI:0|0|0|1|1|1|2|0|392 NbS00001169g0162.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.77|1|0.62|0.66|9|698|337 NbS00001169g0105.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.25|1|1|4|0|232 NbS00001169g0116.1 protein AED:0.44 eAED:0.44 QI:289|1|0.75|1|1|1|4|0|229 NbS00001169g0161.1 protein AED:0.44 eAED:0.44 QI:0|0.66|0.75|1|0.66|0.5|4|171|205 NbS00001169g0129.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.25|1|1|4|0|101 NbS00001169g0147.1 protein AED:0.00 eAED:0.00 QI:151|1|1|1|1|1|2|278|412 NbS00001169g0122.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|722 NbS00001169g0154.1 protein AED:0.07 eAED:0.08 QI:0|0.5|0|1|1|0.66|3|0|899 NbS00001169g0104.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|0|0|2|0|215 NbS00001169g0159.1 protein AED:0.38 eAED:0.43 QI:37|0.57|0.5|0.87|1|1|8|0|379 NbS00001169g0135.1 protein AED:0.72 eAED:0.85 QI:0|0|0.1|0.2|1|1|10|148|214 NbS00016590g0006.1 protein AED:0.27 eAED:0.27 QI:0|1|0.9|1|1|1|10|0|511; (*SWP) sp|Q4FE45|XB33_ARATH (e_value=0.0) E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1;; (*TAIR) AT5G07270.1 (e_value=0.0) | Symbols: XBAT33 | XB3 ortholog 3 in Arabidopsis thaliana | chr5:2280821-2283384 FORWARD LENGTH=513;; (*ITAG) Solyc03g026060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7839094-7845515 transcript_region:SL2.40ch03:7839094..7845515- go_terms:GO:0008381 functional_description:"Ankyrin repeat-rich protein (AHRD V1 **-- C7EC57_NICBE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00019174g0006.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|3|0|657; (*TAIR) AT2G44190.1 (e_value=3e-68) | Symbols: EDE1, QWRF5 | Family of unknown function (DUF566) | chr2:18272346-18274332 FORWARD LENGTH=474;; (*ITAG) Solyc01g096840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79600263-79602243 transcript_region:SL2.40ch01:79600263..79602243- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00019174g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.28|0.25|0.87|0.28|0.25|8|0|521; (*SWP) sp|Q9ZVC9|FRS3_ARATH (e_value=3e-95) Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2;; (*TAIR) AT2G27110.3 (e_value=1e-97) | Symbols: FRS3 | FAR1-related sequence 3 | chr2:11576969-11580259 REVERSE LENGTH=706;; (*ITAG) Solyc01g096850.2.1 (e_value=2e-170) genomic_reference:SL2.40ch01 gene_region:79605422-79610949 transcript_region:SL2.40ch01:79605422..79610949- go_terms:GO:0006310,GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 3 (AHRD V1 ***- FRS3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0006310,GO:0008270 NbS00033682g0001.1 protein AED:0.02 eAED:0.02 QI:90|0|0.5|1|0|0.5|2|232|509; (*SWP) sp|O65782|C83B1_ARATH (e_value=2e-120) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1;; (*TAIR) AT4G31500.1 (e_value=2e-121) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc01g010490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5373579-5375529 transcript_region:SL2.40ch01:5373579..5375529- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00058314g0003.1 protein AED:0.10 eAED:0.10 QI:136|0.75|0.77|0.88|0.37|0.44|9|512|513; (*SWP) sp|Q84WP3|REM17_ARATH (e_value=7e-43) B3 domain-containing protein REM17 OS=Arabidopsis thaliana GN=REM17 PE=2 SV=2;; (*TAIR) AT1G26680.1 (e_value=6e-44) | Symbols: | transcriptional factor B3 family protein | chr1:9219552-9223193 FORWARD LENGTH=920;; (*ITAG) Solyc08g006240.1.1 (e_value=2e-179) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:921931-925834 transcript_region:SL2.40ch08:921931..925834+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 ***- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00000109g0022.1 protein AED:0.07 eAED:0.09 QI:236|0.85|0.62|1|0.71|0.5|8|0|932; (*TAIR) AT5G52280.1 (e_value=5e-144) | Symbols: | Myosin heavy chain-related protein | chr5:21226959-21230109 FORWARD LENGTH=853;; (*ITAG) Solyc03g025830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7602707-7608900 transcript_region:SL2.40ch03:7602707..7608900- functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ)"; NbS00000109g0021.1 protein AED:0.06 eAED:0.08 QI:0|0.27|0.08|1|0.63|0.5|12|43|1626; (*TAIR) AT5G52290.1 (e_value=8e-151) | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21230353-21236554 REVERSE LENGTH=1594;; (*ITAG) Solyc03g025820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7591561-7601490 transcript_region:SL2.40ch03:7591561..7601490+ functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 ***- Q9FHD0_ARATH)"; NbS00000109g0025.1 protein AED:0.26 eAED:0.26 QI:447|0.75|0.8|1|0.75|0.6|5|355|201; (*SWP) sp|Q8L856|ACFR1_ARATH (e_value=4e-81) Transmembrane ascorbate ferrireductase 1 OS=Arabidopsis thaliana GN=CYB561A PE=1 SV=1;; (*TAIR) AT4G25570.1 (e_value=3e-82) | Symbols: ACYB-2 | Cytochrome b561/ferric reductase transmembrane protein family | chr4:13053887-13055518 REVERSE LENGTH=239;; (*ITAG) Solyc03g025840.2.1 (e_value=1e-112) genomic_reference:SL2.40ch03 gene_region:7619088-7621646 transcript_region:SL2.40ch03:7619088..7621646+ go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00000109g0019.1 protein AED:0.29 eAED:0.29 QI:0|1|0.6|1|1|1|5|0|210; (*SWP) sp|P93788|REMO_SOLTU (e_value=1e-60) Remorin OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT5G23750.2 (e_value=2e-42) | Symbols: | Remorin family protein | chr5:8010004-8011453 REVERSE LENGTH=201;; (*ITAG) Solyc03g025850.2.1 (e_value=7e-53) genomic_reference:SL2.40ch03 gene_region:7627656-7630095 transcript_region:SL2.40ch03:7627656..7630095+ go_terms:GO:0003677 functional_description:"Remorin 1 (AHRD V1 ***- Q9XEX8_SOLLC); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00000109g0024.1 protein AED:0.64 eAED:0.66 QI:0|0|0|0.75|0.33|0.5|4|0|215; (*SWP) sp|Q8L856|ACFR1_ARATH (e_value=7e-22) Transmembrane ascorbate ferrireductase 1 OS=Arabidopsis thaliana GN=CYB561A PE=1 SV=1;; (*TAIR) AT1G76065.1 (e_value=1e-28) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr1:28544899-28545306 REVERSE LENGTH=80;; (*ITAG) Solyc03g025840.2.1 (e_value=5e-39) genomic_reference:SL2.40ch03 gene_region:7619088-7621646 transcript_region:SL2.40ch03:7619088..7621646+ go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00045476g0006.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.6|1|0.5|0.4|5|0|340; (*TAIR) AT2G37585.1 (e_value=1e-71) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr2:15765864-15767722 FORWARD LENGTH=384;; (*ITAG) Solyc04g010290.2.1 (e_value=3e-141) genomic_reference:SL2.40ch04 gene_region:3618701-3622866 transcript_region:SL2.40ch04:3618701..3622866+ go_terms:GO:0016757 functional_description:"Beta-1-3-galactosyl-o-glycosyl-glycoprotein (AHRD V1 **-* B6Z261_WHEAT); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00013008g0002.1 protein AED:0.15 eAED:0.15 QI:208|0.83|0.85|1|0.83|0.71|7|253|386; (*SWP) sp|Q9ZPR7|UPS1_ARATH (e_value=0.0) Ureide permease 1 OS=Arabidopsis thaliana GN=UPS1 PE=1 SV=1;; (*TAIR) AT2G03590.1 (e_value=0.0) | Symbols: ATUPS1, UPS1 | ureide permease 1 | chr2:1095129-1096711 FORWARD LENGTH=390;; (*ITAG) Solyc05g012310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5580165-5584303 transcript_region:SL2.40ch05:5580165..5584303- go_terms:GO:0005274,GO:0015505 functional_description:"Ureide permease 2 (AHRD V1 ***- B6U6B9_MAIZE); contains Interpro domain(s) IPR009834 Fatty acid elongase 3-ketoacyl-CoA synthase 1 "; GO:0005274,GO:0015505 NbS00013008g0009.1 protein AED:0.24 eAED:0.27 QI:58|0.72|0.75|1|0.63|0.66|12|813|383; (*SWP) sp|Q5R8F6|CP058_PONAB (e_value=3e-59) UPF0420 protein C16orf58 homolog OS=Pongo abelii PE=2 SV=1;; (*TAIR) AT1G13770.1 (e_value=3e-155) | Symbols: RUS3 | Protein of unknown function, DUF647 | chr1:4721717-4724345 FORWARD LENGTH=440;; (*ITAG) Solyc05g012290.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5568469-5575841 transcript_region:SL2.40ch05:5568469..5575841+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbS00055925g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|220; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=5e-47) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=4e-48) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc09g066360.1.1 (e_value=6e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:60391559-60392140 transcript_region:SL2.40ch09:60391559..60392140+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 **** B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00000234g0003.1 protein AED:0.10 eAED:0.10 QI:124|1|0.75|1|1|1|4|0|651; (*SWP) sp|O65155|KELP_ARATH (e_value=2e-25) RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1;; (*TAIR) AT4G00980.1 (e_value=6e-52) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:422732-424580 REVERSE LENGTH=488;; (*ITAG) Solyc08g082580.2.1 (e_value=5e-28) genomic_reference:SL2.40ch08 gene_region:62481272-62484580 transcript_region:SL2.40ch08:62481272..62484580+ go_terms:GO:0030528,GO:0005515 functional_description:"Activated RNA polymerase II transcriptional coactivator p15 (AHRD V1 *-*- B9EM37_SALSA); contains Interpro domain(s) IPR017415 RNA polymerase II transcriptional coactivator KELP "; GO:0030528,GO:0005515 NbS00024580g0005.1 protein AED:0.21 eAED:0.21 QI:87|0.83|0.85|1|0.83|0.85|7|278|321; (*SWP) sp|Q641W4|RFC2_RAT (e_value=5e-157) Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2 PE=2 SV=1;; (*TAIR) AT1G63160.1 (e_value=0.0) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00005876g0010.1 protein AED:0.13 eAED:0.14 QI:33|0.69|0.64|0.92|1|1|14|1246|1523; (*SWP) sp|Q40863|EMB8_PICGL (e_value=2e-43) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT2G03140.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:942000-949337 FORWARD LENGTH=1797;; (*ITAG) Solyc07g042500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53087928-53101146 transcript_region:SL2.40ch07:53087928..53101146+ go_terms:GO:0016020 functional_description:"Abhydrolase domain containing 3 (AHRD V1 *--- Q66HU2_DANRE); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0016020 NbS00005876g0011.1 protein AED:0.10 eAED:0.10 QI:60|0.72|0.66|0.91|0.81|0.75|12|0|854; (*SWP) sp|P10691|SUS1_SOLTU (e_value=0.0) Sucrose synthase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G43190.1 (e_value=0.0) | Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808;; (*ITAG) Solyc07g042520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53140157-53143939 transcript_region:SL2.40ch07:53140157..53143939- go_terms:GO:0016157 functional_description:"Sucrose synthase 4 (AHRD V1 **** Q7Y078_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00005876g0104.1 protein AED:0.16 eAED:0.16 QI:168|0.90|0.91|1|0.90|0.83|12|234|797 NbS00057385g0005.1 protein AED:0.28 eAED:0.29 QI:0|0.33|0.5|1|1|1|4|462|178; (*TAIR) AT2G27470.1 (e_value=1e-26) | Symbols: NF-YB11 | nuclear factor Y, subunit B11 | chr2:11745196-11746375 REVERSE LENGTH=275;; (*ITAG) Solyc11g068480.1.1 (e_value=8e-48) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50274716-50277634 transcript_region:SL2.40ch11:50274716..50277634+ go_terms:GO:0003677,GO:0005622 functional_description:"DNA polymerase epsilon subunit 3 (AHRD V1 *-*- B6TCI2_MAIZE); contains Interpro domain(s) IPR003958 Transcription factor CBF/NF-Y/archaeal histone "; GO:0003677,GO:0005622 NbS00026875g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.66|1|1|0.66|3|0|372; (*SWP) sp|Q8NE86|MCU_HUMAN (e_value=3e-15) Calcium uniporter protein, mitochondrial OS=Homo sapiens GN=MCU PE=1 SV=1;; (*TAIR) AT2G23790.1 (e_value=7e-101) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc02g065550.2.1 (e_value=1e-146) genomic_reference:SL2.40ch02 gene_region:31286098-31288095 transcript_region:SL2.40ch02:31286098..31288095- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00026875g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|100; (*ITAG) Solyc12g044970.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00007693g0106.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|94 NbS00007693g0107.1 protein AED:0.04 eAED:0.04 QI:35|0.5|0.33|1|1|1|3|0|579 NbS00009483g0001.1 protein AED:0.10 eAED:0.10 QI:462|0.77|0.7|1|1|1|10|399|415; (*SWP) sp|Q64520|KGUA_MOUSE (e_value=2e-58) Guanylate kinase OS=Mus musculus GN=Guk1 PE=1 SV=2;; (*TAIR) AT3G57550.2 (e_value=3e-152) | Symbols: AGK2, GK-2 | guanylate kinase | chr3:21307269-21309193 FORWARD LENGTH=390;; (*ITAG) Solyc03g063600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:32562295-32565899 transcript_region:SL2.40ch03:32562295..32565899+ go_terms:GO:0004385 functional_description:"Guanylate kinase (AHRD V1 **** Q9FVC6_TOBAC); contains Interpro domain(s) IPR017665 Guanylate kinase, sub-group "; GO:0004385 NbS00033733g0004.1 protein AED:0.25 eAED:0.26 QI:0|0.76|0.71|1|0.76|0.85|14|593|674; (*TAIR) AT1G34320.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF668) | chr1:12520713-12524046 FORWARD LENGTH=657;; (*ITAG) Solyc06g065460.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37243663-37253947 transcript_region:SL2.40ch06:37243663..37253947- functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00039380g0018.1 protein AED:0.47 eAED:0.88 QI:0|0|0|0.75|1|1|4|0|138 NbS00039380g0013.1 protein AED:0.12 eAED:0.12 QI:0|0.57|0.5|1|0.71|0.62|8|0|753; (*SWP) sp|Q8W4I4|POT6_ARATH (e_value=0.0) Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=0.0) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc04g025880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22999968-23005944 transcript_region:SL2.40ch04:22999968..23005944+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00039380g0011.1 protein AED:0.14 eAED:0.14 QI:147|0.57|0.75|1|1|1|8|0|651; (*SWP) sp|Q8W4I4|POT6_ARATH (e_value=1e-153) Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=1e-154) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc05g005740.2.1 (e_value=3e-179) genomic_reference:SL2.40ch05 gene_region:553397-558860 transcript_region:SL2.40ch05:553397..558860+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00039380g0012.1 protein AED:0.27 eAED:0.27 QI:450|1|0.87|1|1|1|8|0|758; (*SWP) sp|O80739|POT12_ARATH (e_value=0.0) Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2;; (*TAIR) AT1G60160.1 (e_value=0.0) | Symbols: | Potassium transporter family protein | chr1:22188330-22191395 REVERSE LENGTH=827;; (*ITAG) Solyc04g025990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:23432889-23439874 transcript_region:SL2.40ch04:23432889..23439874- go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00008304g0012.1 protein AED:0.02 eAED:0.02 QI:128|1|1|1|0.5|0.33|3|19|186; (*TAIR) AT3G54040.1 (e_value=1e-62) | Symbols: | PAR1 protein | chr3:20014032-20015299 REVERSE LENGTH=183;; (*ITAG) Solyc10g085010.1.1 (e_value=2e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63675641-63676631 transcript_region:SL2.40ch10:63675641..63676631- functional_description:"PAR-1c protein (AHRD V1 ***- Q43589_TOBAC); contains Interpro domain(s) IPR009489 PAR1 "; NbS00008304g0015.1 protein AED:0.33 eAED:0.35 QI:12|0.66|0.25|1|0.33|0.5|4|0|210; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=4e-89) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G59010.2 (e_value=4e-107) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:23820578-23822499 REVERSE LENGTH=359;; (*ITAG) Solyc10g085000.1.1 (e_value=3e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63669940-63674284 transcript_region:SL2.40ch10:63669940..63674284+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 ***- C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00008304g0004.1 protein AED:0.46 eAED:0.49 QI:0|0.16|0.14|0.71|1|1|7|211|346; (*ITAG) Solyc08g044310.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00008304g0017.1 protein AED:0.27 eAED:0.60 QI:56|0|0|1|0|0|2|0|133; (*ITAG) Solyc12g019720.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00049592g0003.1 protein AED:0.34 eAED:0.34 QI:389|0.5|0.66|1|0|0|3|389|151; (*ITAG) Solyc11g005440.1.1 (e_value=2e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00049592g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0.25|4|0|229; (*TAIR) AT5G09840.1 (e_value=7e-14) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=3e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00049592g0012.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0|1|0.5|0|3|0|196; (*TAIR) AT5G09840.1 (e_value=1e-81) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=2e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00049592g0013.1 protein AED:0.45 eAED:0.53 QI:0|0|0|1|0|0|2|0|131; (*TAIR) AT5G09840.1 (e_value=7e-29) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00004858g0102.1 protein AED:0.24 eAED:0.25 QI:0|0.25|0.4|0.8|1|1|5|0|247 NbS00004858g0120.1 protein AED:0.16 eAED:0.16 QI:204|0.61|0.85|1|0.69|0.78|14|673|417 NbS00024600g0010.1 protein AED:0.22 eAED:0.25 QI:0|0.4|0.18|0.90|0.6|0.45|11|0|455; (*SWP) sp|P38094|FLUG_EMENI (e_value=5e-30) Protein fluG OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fluG PE=1 SV=1;; (*TAIR) AT3G53180.1 (e_value=1e-107) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083830.1.1 (e_value=3e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62894379-62902328 transcript_region:SL2.40ch10:62894379..62902328- go_terms:GO:0008152,GO:0005524,GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0008152,GO:0005524,GO:0006807,GO:0003824 NbS00000730g0004.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|2|0|259; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-34) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-35) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g068820.1.1 (e_value=1e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33305255-33309123 transcript_region:SL2.40ch02:33305255..33309123- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00015451g0004.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|153; (*SWP) sp|Q9ZU51|RHA2B_ARATH (e_value=4e-13) Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2;; (*TAIR) AT2G04240.2 (e_value=4e-44) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162;; (*ITAG) Solyc07g045190.1.1 (e_value=3e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55644301-55644666 transcript_region:SL2.40ch07:55644301..55644666+ go_terms:GO:0005515 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q30D22_PONTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00015451g0017.1 protein AED:0.11 eAED:0.13 QI:0|0|0|1|0|0.33|3|0|587; (*TAIR) AT2G04280.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12700.1); Has 130 Blast hits to 130 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr2:1480277-1481983 REVERSE LENGTH=568;; (*ITAG) Solyc07g045210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55647405-55649153 transcript_region:SL2.40ch07:55647405..55649153- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00015451g0014.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|0.5|2|0|359; (*SWP) sp|O22193|PUB4_ARATH (e_value=1e-25) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G12710.1 (e_value=1e-107) | Symbols: | ARM repeat superfamily protein | chr4:7485040-7486733 REVERSE LENGTH=402;; (*ITAG) Solyc07g045220.2.1 (e_value=1e-162) genomic_reference:SL2.40ch07 gene_region:55650453-55654789 transcript_region:SL2.40ch07:55650453..55654789- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MVP7_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00015451g0019.1 protein AED:0.16 eAED:0.23 QI:0|0.69|0.5|1|0.38|0.5|14|601|949; (*TAIR) AT3G07660.1 (e_value=4e-85) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc07g045230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55658476-55669122 transcript_region:SL2.40ch07:55658476..55669122- functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 *--- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00015451g0005.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|183; (*ITAG) Solyc12g006220.1.1 (e_value=5e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:744166-744465 transcript_region:SL2.40ch12:744166..744465+ functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 --*- Q9FKU6_ARATH)"; NbS00049748g0003.1 protein AED:0.44 eAED:0.45 QI:60|1|0.66|1|0.5|0.66|3|0|117; (*SWP) sp|Q43636|TRXH_RICCO (e_value=5e-71) Thioredoxin H-type OS=Ricinus communis PE=3 SV=1;; (*TAIR) AT3G51030.1 (e_value=4e-65) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc02g084710.2.1 (e_value=9e-68) genomic_reference:SL2.40ch02 gene_region:42394410-42396096 transcript_region:SL2.40ch02:42394410..42396096+ go_terms:GO:0045454 functional_description:"Thioredoxin h1 (AHRD V1 ***- A8HTK0_SOYBN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00035679g0008.1 protein AED:0.36 eAED:0.36 QI:0|1|0.2|1|1|1|5|0|126; (*SWP) sp|Q9M0G9|AB24B_ARATH (e_value=1e-71) ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=1 SV=1;; (*TAIR) AT4G28620.1 (e_value=1e-72) | Symbols: ATATM2, ATM2 | ABC transporter of the mitochondrion 2 | chr4:14135526-14137953 REVERSE LENGTH=680;; (*ITAG) Solyc09g055350.2.1 (e_value=2e-80) genomic_reference:SL2.40ch09 gene_region:35636998-35672737 transcript_region:SL2.40ch09:35636998..35672737+ go_terms:GO:0015232 functional_description:"ABC transporter ATP-binding/permease protein (AHRD V1 **** A3SXQ3_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015232 NbS00011334g0006.1 protein AED:0.24 eAED:0.24 QI:0|0.62|0.55|0.88|0.75|0.77|9|0|253; (*SWP) sp|P26519|G3PC_PETCR (e_value=3e-95) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1;; (*TAIR) AT1G13440.2 (e_value=3e-148) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310;; (*ITAG) Solyc05g005820.2.1 (e_value=3e-100) genomic_reference:SL2.40ch05 gene_region:648534-651277 transcript_region:SL2.40ch05:648534..651277- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** Q9XG67_TOBAC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00043957g0016.1 protein AED:0.03 eAED:0.03 QI:150|1|0.5|1|1|1|2|0|98; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=4e-35) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=3e-36) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=4e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00043957g0021.1 protein AED:0.04 eAED:0.09 QI:66|0.5|0|1|0|0|3|0|464; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=1e-22) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=8e-24) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc01g111850.2.1 (e_value=4e-158) genomic_reference:SL2.40ch01 gene_region:89771695-89773633 transcript_region:SL2.40ch01:89771695..89773633- go_terms:GO:0005515,GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 ***- A9ZMF9_NEPAL); contains Interpro domain(s) IPR009007 Peptidase aspartic, catalytic "; GO:0005515,GO:0003677 NbS00043957g0018.1 protein AED:0.09 eAED:0.10 QI:56|0.5|0.33|0.88|0.62|0.44|9|0|2125; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=0.0) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=0.0) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00043957g0017.1 protein AED:0.11 eAED:0.11 QI:100|1|0.6|1|0.5|0.4|5|0|226; (*SWP) sp|Q9FKS4|ATR_ARATH (e_value=1e-56) Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2;; (*TAIR) AT5G40820.1 (e_value=9e-58) | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated and RAD3-related | chr5:16343860-16353847 REVERSE LENGTH=2702;; (*ITAG) Solyc01g111870.1.1 (e_value=5e-134) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89784561-89800491 transcript_region:SL2.40ch01:89784561..89800491- go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase (AHRD V1 *-** D2V0W7_NAEGR); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004672 NbS00043957g0020.1 protein AED:0.26 eAED:0.26 QI:315|1|0.83|1|0.6|0.33|6|0|389; (*SWP) sp|Q6NRH1|DCAF8_XENLA (e_value=4e-76) DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1;; (*TAIR) AT4G35140.1 (e_value=1e-168) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16723873-16726477 REVERSE LENGTH=496;; (*ITAG) Solyc01g111860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89775251-89782064 transcript_region:SL2.40ch01:89775251..89782064- go_terms:GO:0042826,GO:0042393 functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042826,GO:0042393 NbS00043957g0019.1 protein AED:0.44 eAED:0.68 QI:0|1|0|1|0|0.5|2|0|119; (*TAIR) AT4G35140.1 (e_value=4e-37) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16723873-16726477 REVERSE LENGTH=496;; (*ITAG) Solyc01g111860.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:89775251-89782064 transcript_region:SL2.40ch01:89775251..89782064- go_terms:GO:0042826,GO:0042393 functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042826,GO:0042393 NbS00033825g0007.1 protein AED:0.21 eAED:0.25 QI:0|0.14|0|1|0.28|0.5|8|0|393; (*TAIR) AT1G29020.1 (e_value=1e-39) | Symbols: | Calcium-binding EF-hand family protein | chr1:10120497-10122902 REVERSE LENGTH=564;; (*ITAG) Solyc04g039960.2.1 (e_value=8e-57) genomic_reference:SL2.40ch04 gene_region:30733011-30735914 transcript_region:SL2.40ch04:30733011..30735914+ functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR018249 EF-HAND 2 "; NbS00033825g0006.1 protein AED:0.44 eAED:0.58 QI:0|0|0|1|0|0.5|2|0|100; (*TAIR) AT2G34020.1 (e_value=2e-13) | Symbols: | Calcium-binding EF-hand family protein | chr2:14371292-14373703 REVERSE LENGTH=610;; (*ITAG) Solyc02g077270.2.1 (e_value=4e-18) genomic_reference:SL2.40ch02 gene_region:36835987-36840323 transcript_region:SL2.40ch02:36835987..36840323- go_terms:GO:0016021,GO:0005509 functional_description:"Calcium ion binding protein (AHRD V1 *-*- B6U1M5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0016021,GO:0005509 NbS00033825g0002.1 protein AED:0.51 eAED:0.71 QI:0|0|0|0.66|1|1|3|0|110; (*TAIR) AT3G57062.2 (e_value=3e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system. | chr3:21121443-21121589 FORWARD LENGTH=48;; (*ITAG) Solyc04g040000.2.1 (e_value=6e-19) genomic_reference:SL2.40ch04 gene_region:30742030-30742792 transcript_region:SL2.40ch04:30742030..30742792- functional_description:"Unknown Protein (AHRD V1)"; NbS00019983g0005.1 protein AED:0.29 eAED:0.30 QI:81|1|0.75|1|0.66|1|4|0|178; (*SWP) sp|Q9ATF5|RL18A_CASSA (e_value=8e-121) 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1;; (*TAIR) AT3G14600.1 (e_value=1e-120) | Symbols: | Ribosomal protein L18ae/LX family protein | chr3:4910773-4911933 FORWARD LENGTH=178;; (*ITAG) Solyc02g070650.2.1 (e_value=8e-132) genomic_reference:SL2.40ch02 gene_region:34912165-34914546 transcript_region:SL2.40ch02:34912165..34914546+ go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L18a (AHRD V1 ***- D2D962_9ROSI); contains Interpro domain(s) IPR002670 Ribosomal protein L18ae "; GO:0003735,GO:0005515 NbS00019983g0006.1 protein AED:0.24 eAED:0.24 QI:218|1|1|1|0.83|0.71|7|517|272; (*SWP) sp|P52410|KASC1_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.1 (e_value=0.0) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=473;; (*ITAG) Solyc08g016170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:6886393-6897476 transcript_region:SL2.40ch08:6886393..6897476+ go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl carrier protein) synthase II (AHRD V1 **** D6YNQ6_CHLT1); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00018636g0004.1 protein AED:0.13 eAED:0.18 QI:0|0.2|0|1|0.2|0|6|0|580; (*SWP) sp|O81825|DRL28_ARATH (e_value=4e-27) Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1;; (*TAIR) AT4G27220.1 (e_value=3e-28) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13633953-13636712 REVERSE LENGTH=919;; (*ITAG) Solyc11g007790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2028383-2031076 transcript_region:SL2.40ch11:2028383..2031076+ go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00018636g0005.1 protein AED:0.46 eAED:0.69 QI:0|0|0|1|0|0|2|0|66 NbS00055090g0001.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|60; (*ITAG) Solyc03g033590.1.1 (e_value=9e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:9432895-9433194 transcript_region:SL2.40ch03:9432895..9433194+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00057692g0005.1 protein AED:0.11 eAED:0.12 QI:0|0.28|0.25|1|0.71|0.62|8|0|1198; (*SWP) sp|Q39203|SD22_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1;; (*TAIR) AT4G00340.1 (e_value=0.0) | Symbols: RLK4 | receptor-like protein kinase 4 | chr4:148958-151496 FORWARD LENGTH=818;; (*ITAG) Solyc01g094830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78001095-78008003 transcript_region:SL2.40ch01:78001095..78008003- go_terms:GO:0019199,GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q39203_ARATH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0019199,GO:0004674 NbS00026547g0006.1 protein AED:0.10 eAED:0.15 QI:0|0.33|0|1|0.33|0.25|4|0|619; (*SWP) sp|Q9SLK6|ALA6_ARATH (e_value=0.0) Phospholipid-transporting ATPase 6 OS=Arabidopsis thaliana GN=ALA6 PE=1 SV=2;; (*TAIR) AT1G54280.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:20262766-20267293 REVERSE LENGTH=1240;; (*ITAG) Solyc12g044920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45725468-45730501 transcript_region:SL2.40ch12:45725468..45730501+ go_terms:GO:0016020,GO:0016021 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 ***- C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0016020,GO:0016021 NbS00030774g0001.1 protein AED:0.16 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|202; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=1e-63) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT5G67300.1 (e_value=8e-65) | Symbols: ATMYBR1, ATMYB44, MYBR1, MYB44 | myb domain protein r1 | chr5:26854109-26855026 FORWARD LENGTH=305;; (*ITAG) Solyc04g078420.1.1 (e_value=7e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60755266-60756252 transcript_region:SL2.40ch04:60755266..60756252- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- A3F8D7_CAPAN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00030774g0002.1 protein AED:0.76 eAED:0.97 QI:0|0|0|0.5|1|1|4|0|60 NbS00009802g0001.1 protein AED:0.17 eAED:0.18 QI:0|0.33|0.30|0.76|1|1|13|0|638; (*SWP) sp|Q8RXE7|AGD14_ARATH (e_value=2e-47) Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2;; (*TAIR) AT4G32630.2 (e_value=1e-69) | Symbols: | ArfGap/RecO-like zinc finger domain-containing protein | chr4:15738315-15741412 FORWARD LENGTH=628;; (*ITAG) Solyc08g067930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54195118-54201844 transcript_region:SL2.40ch08:54195118..54201844+ go_terms:GO:0005525,GO:0003924 functional_description:"Arf GTPase activating protein (AHRD V1 *--* D3B9L6_POLPA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0005525,GO:0003924 NbS00009802g0008.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|0|0|2|0|54 NbS00051470g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.75|1|0.33|0.5|4|572|222; (*SWP) sp|Q12486|YOR31_YEAST (e_value=2e-22) Putative uncharacterized hydrolase YOR131C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR131C PE=1 SV=1;; (*TAIR) AT2G33255.1 (e_value=4e-106) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:14098795-14100358 FORWARD LENGTH=245;; (*ITAG) Solyc09g090750.2.1 (e_value=2e-137) genomic_reference:SL2.40ch09 gene_region:65532507-65537885 transcript_region:SL2.40ch09:65532507..65537885+ go_terms:GO:0005515,GO:0016791 functional_description:"HAD-superfamily hydrolase subfamily IA variant 1 (AHRD V1 ***- D2R0E7_PIRSD); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016791 NbS00051470g0012.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|553; (*TAIR) AT1G04570.1 (e_value=1e-173) | Symbols: | Major facilitator superfamily protein | chr1:1246859-1248600 REVERSE LENGTH=542;; (*ITAG) Solyc09g090760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65538656-65545271 transcript_region:SL2.40ch09:65538656..65545271+ functional_description:"Folate/biopterin transporter family protein (AHRD V1 *-*- B6TYM7_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; NbS00035853g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|238; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=1e-80) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=1e-79) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc08g076690.1.1 (e_value=1e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57799937-57801034 transcript_region:SL2.40ch08:57799937..57801034+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00035853g0005.1 protein AED:0.41 eAED:0.41 QI:27|-1|0|1|-1|1|1|0|113; (*SWP) sp|Q84Y01|ITPK1_MAIZE (e_value=2e-37) Inositol-tetrakisphosphate 1-kinase 1 OS=Zea mays GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=2e-33) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc08g076690.1.1 (e_value=8e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57799937-57801034 transcript_region:SL2.40ch08:57799937..57801034+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0004428 NbS00048073g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.33|0.25|0.75|0.33|0.5|4|0|160; (*ITAG) Solyc01g005040.2.1 (e_value=1e-51) genomic_reference:SL2.40ch01 gene_region:55810-56888 transcript_region:SL2.40ch01:55810..56888+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00011960g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.25|0.75|1|1|4|0|631; (*SWP) sp|Q9SZR9|AB9G_ARATH (e_value=0.0) ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=2;; (*TAIR) AT4G27420.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr4:13712434-13714797 REVERSE LENGTH=638;; (*ITAG) Solyc12g013630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4473107-4475957 transcript_region:SL2.40ch12:4473107..4475957- go_terms:GO:0016020,GO:0031177,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 9 (AHRD V1 ***- AB9G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0031177,GO:0017111,GO:0016887 NbS00035124g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.75|1|1|1|4|240|619; (*SWP) sp|Q55G83|ABKC_DICDI (e_value=2e-80) Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1;; (*TAIR) AT1G11390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc02g084400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42094686-42099504 transcript_region:SL2.40ch02:42094686..42099504- go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 **-- ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00035124g0007.1 protein AED:0.14 eAED:0.14 QI:239|1|0.92|1|0.91|0.92|13|0|1026; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=2e-82) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT5G66310.1 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr5:26485786-26490304 REVERSE LENGTH=1063;; (*ITAG) Solyc02g084390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42084435-42089727 transcript_region:SL2.40ch02:42084435..42089727- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00034437g0013.1 protein AED:0.25 eAED:0.25 QI:0|0.81|0.5|1|0.81|0.83|12|0|628; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=1e-59) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=0.0) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc02g081040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39681851-39685792 transcript_region:SL2.40ch02:39681851..39685792- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00034437g0012.1 protein AED:0.24 eAED:0.26 QI:113|0.46|0.57|0.92|0.53|0.57|14|821|797; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=3e-58) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=9e-130) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc02g081050.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39687095-39691287 transcript_region:SL2.40ch02:39687095..39691287- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like kinase (AHRD V1 *-** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00046570g0002.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|1|1|3|0|241; (*SWP) sp|Q84TJ0|PMT6_ARATH (e_value=1e-101) Probable methyltransferase PMT6 OS=Arabidopsis thaliana GN=At3g10200 PE=2 SV=1;; (*TAIR) AT3G10200.1 (e_value=1e-102) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:3157618-3160016 FORWARD LENGTH=591;; (*ITAG) Solyc10g079450.1.1 (e_value=3e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60309915-60318019 transcript_region:SL2.40ch10:60309915..60318019+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00046570g0012.1 protein AED:0.04 eAED:0.04 QI:19|1|0.66|1|0.8|0.66|6|0|400; (*SWP) sp|Q0WU02|MTP10_ARATH (e_value=0.0) Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1;; (*TAIR) AT1G16310.1 (e_value=0.0) | Symbols: | Cation efflux family protein | chr1:5578435-5580585 FORWARD LENGTH=428;; (*ITAG) Solyc10g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:414474-416809 transcript_region:SL2.40ch10:414474..416809- go_terms:GO:0016020 functional_description:"Cation diffusion facilitator 9 (AHRD V1 **-- Q84ND5_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00046570g0009.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|0|0|4|0|289; (*ITAG) Solyc10g079230.1.1 (e_value=4e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00048291g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|102; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=3e-14) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT1G48940.1 (e_value=4e-28) | Symbols: ENODL6, AtENODL6 | early nodulin-like protein 6 | chr1:18105808-18106422 REVERSE LENGTH=177;; (*ITAG) Solyc03g119880.2.1 (e_value=3e-40) genomic_reference:SL2.40ch03 gene_region:62476615-62477222 transcript_region:SL2.40ch03:62476615..62477222+ go_terms:GO:0009055,GO:0055114 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055,GO:0055114 NbS00023132g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|209; (*TAIR) AT4G39730.1 (e_value=3e-69) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc04g054990.2.1 (e_value=4e-92) genomic_reference:SL2.40ch04 gene_region:52670217-52672301 transcript_region:SL2.40ch04:52670217..52672301+ functional_description:"Lipoxygenase homology domain-containing protein 1 (AHRD V1 *--- LOXH1_HUMAN); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00012325g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|219; (*SWP) sp|Q9SXS8|ERF3_TOBAC (e_value=9e-58) Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1;; (*TAIR) AT1G50640.1 (e_value=2e-31) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc10g006130.1.1 (e_value=6e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:863907-864572 transcript_region:SL2.40ch10:863907..864572- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene responsive transcription factor 3a (AHRD V1 **** C0J9I5_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003700 NbS00028100g0001.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|71 NbS00009607g0018.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|0.5|1|1|2|129|328; (*SWP) sp|Q9FLT2|IPMKB_ARATH (e_value=1e-132) Inositol polyphosphate multikinase beta OS=Arabidopsis thaliana GN=IPK2b PE=1 SV=1;; (*TAIR) AT5G61760.1 (e_value=1e-133) | Symbols: ATIPK2BETA, IPK2B, IPK2BETA | inositol polyphosphate kinase 2 beta | chr5:24813916-24814818 REVERSE LENGTH=300;; (*ITAG) Solyc03g118000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61040553-61041437 transcript_region:SL2.40ch03:61040553..61041437- go_terms:GO:0008440,GO:0000823 functional_description:"Inositol hexakisphosphate kinase 3 (AHRD V1 **** Q5TAQ4_HUMAN); contains Interpro domain(s) IPR005522 Inositol polyphosphate kinase "; GO:0008440,GO:0000823 NbS00009607g0020.1 protein AED:0.12 eAED:0.15 QI:0|0.5|0.28|0.71|0.66|0.71|7|0|501; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-41) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1;; (*TAIR) AT4G20020.2 (e_value=4e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10844360-10846085 REVERSE LENGTH=406;; (*ITAG) Solyc02g079210.2.1 (e_value=4e-77) genomic_reference:SL2.40ch02 gene_region:38397630-38401238 transcript_region:SL2.40ch02:38397630..38401238- functional_description:"DAG protein (AHRD V1 *-*- B6SJX7_MAIZE)"; NbS00009607g0019.1 protein AED:0.16 eAED:0.16 QI:108|1|0.91|1|0.63|0.83|12|390|624; (*TAIR) AT5G07380.2 (e_value=0.0) | Symbols: | unknown protein; Has 84 Blast hits to 81 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2332527-2335736 FORWARD LENGTH=641;; (*ITAG) Solyc03g117990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61033942-61039749 transcript_region:SL2.40ch03:61033942..61039749- functional_description:"Unknown Protein (AHRD V1)"; NbS00009607g0010.1 protein AED:0.20 eAED:0.20 QI:88|1|1|1|0.33|0.5|4|29|159; (*TAIR) AT5G07330.1 (e_value=3e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:2316064-2316641 FORWARD LENGTH=165;; (*ITAG) Solyc03g118050.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:61095328-61096752 transcript_region:SL2.40ch03:61095328..61096752- go_terms:GO:0008026 functional_description:"Unknown Protein (AHRD V1)"; GO:0008026 NbS00009607g0021.1 protein AED:0.42 eAED:0.47 QI:0|0|0|1|0|0|2|0|91; (*TAIR) AT5G07330.1 (e_value=8e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:2316064-2316641 FORWARD LENGTH=165;; (*ITAG) Solyc03g118060.2.1 (e_value=5e-33) genomic_reference:SL2.40ch03 gene_region:61097802-61098589 transcript_region:SL2.40ch03:61097802..61098589- functional_description:"Unknown Protein (AHRD V1)"; NbS00035758g0002.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0|3|0|185; (*ITAG) Solyc11g020320.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:10842641-10843468 transcript_region:SL2.40ch11:10842641..10843468- go_terms:GO:0005634 functional_description:"Transcription factor MADS-box (AHRD V1 *-*- Q2HRQ1_MEDTR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00023014g0001.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.42|0.85|1|1|7|0|478; (*SWP) sp|Q40545|KPYA_TOBAC (e_value=0.0) Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G22960.1 (e_value=0.0) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc09g082970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64040779-64049501 transcript_region:SL2.40ch09:64040779..64049501+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9HKC4_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00007453g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.25|1|1|4|0|222; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=4e-113) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=3e-114) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=3e-118) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00018117g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|157; (*SWP) sp|Q9M7R0|ALL8_OLEEU (e_value=3e-68) Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1;; (*TAIR) AT1G18210.2 (e_value=8e-60) | Symbols: | Calcium-binding EF-hand family protein | chr1:6268273-6268785 REVERSE LENGTH=170;; (*ITAG) Solyc06g068960.1.1 (e_value=9e-97) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:39171990-39172454 transcript_region:SL2.40ch06:39171990..39172454+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- D3PJ43_9MAXI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00018117g0003.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|82; (*ITAG) Solyc03g071760.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41632198-41632572 transcript_region:SL2.40ch03:41632198..41632572- functional_description:"Unknown Protein (AHRD V1)"; NbS00018117g0005.1 protein AED:0.59 eAED:0.81 QI:0|0|0|1|1|1|2|0|228; (*ITAG) Solyc10g012440.1.1 (e_value=7e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:5209998-5210303 transcript_region:SL2.40ch10:5209998..5210303- functional_description:"Unknown Protein (AHRD V1)"; NbS00018117g0010.1 protein AED:0.54 eAED:1.00 QI:0|0|0|0.6|1|0.8|5|0|297 NbS00037315g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|289; (*SWP) sp|Q9SJL9|XTH32_ARATH (e_value=3e-149) Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1;; (*TAIR) AT2G36870.1 (e_value=2e-150) | Symbols: XTH32 | xyloglucan endotransglucosylase/hydrolase 32 | chr2:15472869-15474630 REVERSE LENGTH=299;; (*ITAG) Solyc09g008320.2.1 (e_value=2e-167) genomic_reference:SL2.40ch09 gene_region:1783996-1786766 transcript_region:SL2.40ch09:1783996..1786766+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 12 (AHRD V1 **** C0IRH1_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00018072g0005.1 protein AED:0.15 eAED:0.15 QI:12|0.8|0.5|1|0.8|0.66|6|0|765; (*SWP) sp|Q9FG77|WRKY2_ARATH (e_value=3e-176) Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1;; (*TAIR) AT5G56270.1 (e_value=3e-177) | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein 2 | chr5:22780816-22783137 FORWARD LENGTH=687;; (*ITAG) Solyc07g066220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64918419-64923896 transcript_region:SL2.40ch07:64918419..64923896- go_terms:GO:0045449 functional_description:"WRKY transcription factor 35 (AHRD V1 ***- Q7XAA6_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00054363g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.78|0.53|1|0.71|0.73|15|397|1384; (*SWP) sp|Q2LAE1|ASHH2_ARATH (e_value=6e-124) Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1;; (*TAIR) AT1G77300.2 (e_value=4e-126) | Symbols: EFS, SDG8, ASHH2, LAZ2 | histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) | chr1:29040936-29048810 REVERSE LENGTH=1501;; (*ITAG) Solyc04g057880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54137198-54159396 transcript_region:SL2.40ch04:54137198..54159396+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K1E8_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0008270 NbS00054363g0013.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|0.5|2|0|268; (*SWP) sp|O80662|TCHQD_ARATH (e_value=1e-139) Glutathione S-transferase TCHQD OS=Arabidopsis thaliana GN=TCHQD PE=2 SV=1;; (*TAIR) AT1G77290.2 (e_value=1e-140) | Symbols: | Glutathione S-transferase family protein | chr1:29038917-29039815 FORWARD LENGTH=266;; (*ITAG) Solyc04g057890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54159851-54162705 transcript_region:SL2.40ch04:54159851..54162705- functional_description:"Ganglioside-induced differentiation-associated protein 1 (AHRD V1 **-- Q78AN2_DANRE); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; NbS00054363g0015.1 protein AED:0.48 eAED:0.64 QI:0|0|0|1|0|0|2|0|96 NbS00017783g0015.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|398|176; (*TAIR) AT1G77220.1 (e_value=7e-89) | Symbols: | Protein of unknown function (DUF300) | chr1:29013232-29015530 FORWARD LENGTH=484;; (*ITAG) Solyc04g064850.2.1 (e_value=7e-118) genomic_reference:SL2.40ch04 gene_region:55133469-55140024 transcript_region:SL2.40ch04:55133469..55140024+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00017783g0019.1 protein AED:0.21 eAED:0.21 QI:649|1|0.85|1|0.5|0.28|7|0|304; (*SWP) sp|Q6GQE1|T184C_XENLA (e_value=3e-45) Transmembrane protein 184C OS=Xenopus laevis GN=tmem184c PE=2 SV=1;; (*TAIR) AT1G77220.1 (e_value=4e-156) | Symbols: | Protein of unknown function (DUF300) | chr1:29013232-29015530 FORWARD LENGTH=484;; (*ITAG) Solyc04g064850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55133469-55140024 transcript_region:SL2.40ch04:55133469..55140024+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00017783g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|0.91|1|1|1|12|50|545; (*SWP) sp|O49048|VPS45_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2;; (*TAIR) AT1G77140.1 (e_value=0.0) | Symbols: VPS45, ATVPS45 | vacuolar protein sorting 45 | chr1:28984163-28987681 FORWARD LENGTH=569;; (*ITAG) Solyc04g064820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55103846-55119443 transcript_region:SL2.40ch04:55103846..55119443+ go_terms:GO:0051082,GO:0000149 functional_description:"Vacuolar protein-sorting protein 45 (AHRD V1 ***- B6UDC0_MAIZE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0051082,GO:0000149 NbS00001415g0017.1 protein AED:0.10 eAED:0.10 QI:104|0.85|0.87|1|0.57|0.5|8|294|223; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=2e-90) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.5 (e_value=3e-92) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:552937-554411 FORWARD LENGTH=314;; (*ITAG) Solyc04g025400.2.1 (e_value=2e-134) genomic_reference:SL2.40ch04 gene_region:19952219-19955577 transcript_region:SL2.40ch04:19952219..19955577+ go_terms:GO:0008195 functional_description:"Lipid phosphate phosphatase 3 (AHRD V1 **** B6SSC1_MAIZE); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00001415g0011.1 protein AED:0.35 eAED:0.35 QI:220|1|1|1|0.28|0.25|8|197|237; (*SWP) sp|Q6NKP9|AMSH2_ARATH (e_value=6e-90) AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana GN=AMSH2 PE=2 SV=1;; (*TAIR) AT1G10600.1 (e_value=4e-91) | Symbols: AMSH2 | associated molecule with the SH3 domain of STAM 2 | chr1:3503765-3505190 FORWARD LENGTH=223;; (*ITAG) Solyc01g060280.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:62800092-62812738 transcript_region:SL2.40ch01:62800092..62812738+ go_terms:GO:0005515 functional_description:"STAM binding protein (AHRD V1 *--* B2W8T5_PYRTR); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00001415g0016.1 protein AED:0.41 eAED:0.41 QI:60|0|0|0.5|0|0.5|2|0|28 NbS00001415g0029.1 protein AED:0.07 eAED:0.07 QI:60|0.71|1|1|0.85|0.75|8|2157|665; (*SWP) sp|Q9CA56|PP121_ARATH (e_value=3e-97) Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1;; (*TAIR) AT1G23450.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8324698-8326697 FORWARD LENGTH=666;; (*ITAG) Solyc04g025430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:20486364-20488334 transcript_region:SL2.40ch04:20486364..20488334+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00001415g0020.1 protein AED:0.10 eAED:0.10 QI:80|0.92|1|1|0.84|0.71|14|213|431; (*SWP) sp|O22718|ACLA2_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1;; (*TAIR) AT1G60810.1 (e_value=0.0) | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388691-22390993 REVERSE LENGTH=423;; (*ITAG) Solyc05g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:141208-145022 transcript_region:SL2.40ch05:141208..145022- go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-2 (AHRD V1 **** D7KWP3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00001415g0025.1 protein AED:0.25 eAED:0.29 QI:0|0.72|0.66|1|0.81|0.75|12|0|636; (*SWP) sp|Q93ZS4|NIK3_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1;; (*TAIR) AT1G60800.1 (e_value=0.0) | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383601-22386931 REVERSE LENGTH=632;; (*ITAG) Solyc04g039730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30322309-30327080 transcript_region:SL2.40ch04:30322309..30327080+ go_terms:GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0016301 NbS00023166g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|211; (*SWP) sp|O80920|PYL4_ARATH (e_value=2e-80) Abscisic acid receptor PYL4 OS=Arabidopsis thaliana GN=PYL4 PE=1 SV=1;; (*TAIR) AT2G38310.1 (e_value=1e-81) | Symbols: PYL4, RCAR10 | PYR1-like 4 | chr2:16050251-16050874 FORWARD LENGTH=207;; (*ITAG) Solyc10g076410.1.1 (e_value=2e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58714005-58714616 transcript_region:SL2.40ch10:58714005..58714616- functional_description:"Abscisic acid receptor PYL4 (AHRD V1 **-- PYL4_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00002627g0013.1 protein AED:0.28 eAED:0.28 QI:0|0.33|0|0.5|0|0|4|0|95; (*TAIR) AT4G23730.1 (e_value=2e-14) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=6e-23) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00002627g0005.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|1|1|2|0|527; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=2e-66) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*ITAG) Solyc05g012890.1.1 (e_value=8e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00002627g0014.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|3|0|413; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=4e-74) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT1G59780.1 (e_value=2e-19) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906;; (*ITAG) Solyc05g007610.2.1 (e_value=7e-144) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00002627g0004.1 protein AED:0.46 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|120; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=2e-26) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=6e-13) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012910.2.1 (e_value=4e-38) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00002627g0020.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.75|0|0|4|0|557; (*SWP) sp|Q6L3Z0|R1B13_SOLDE (e_value=5e-89) Putative late blight resistance protein homolog R1B-13 OS=Solanum demissum GN=R1B-13 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=3e-29) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012910.2.1 (e_value=7e-106) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00002627g0016.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|0|0|2|0|415; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=6e-42) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*ITAG) Solyc05g012890.1.1 (e_value=9e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00002627g0019.1 protein AED:0.48 eAED:0.70 QI:0|0|0|1|0|0|2|0|65 NbS00023693g0008.1 protein AED:0.19 eAED:0.19 QI:80|1|1|1|1|1|3|284|310; (*SWP) sp|Q0JIC2|GAM1_ORYSJ (e_value=9e-37) Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G60460.1 (e_value=3e-78) | Symbols: DUO1 | myb-like HTH transcriptional regulator family protein | chr3:22342429-22343491 REVERSE LENGTH=297;; (*ITAG) Solyc01g090530.1.1 (e_value=2e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75956882-75959366 transcript_region:SL2.40ch01:75956882..75959366+ go_terms:GO:0016563,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0016563,GO:0003700 NbS00053995g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|0.66|3|0|533; (*SWP) sp|Q9LXH0|NRT26_ARATH (e_value=0.0) High affinity nitrate transporter 2.6 OS=Arabidopsis thaliana GN=NRT2.6 PE=1 SV=1;; (*TAIR) AT3G45060.1 (e_value=0.0) | Symbols: ATNRT2.6, NRT2.6 | high affinity nitrate transporter 2.6 | chr3:16477671-16479386 REVERSE LENGTH=542;; (*ITAG) Solyc11g069750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00010745g0008.1 protein AED:0.08 eAED:0.11 QI:0|1|0.66|1|1|1|3|87|226; (*SWP) sp|P27061|PPA1_SOLLC (e_value=8e-63) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT2G38600.1 (e_value=3e-108) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr2:16145907-16146857 FORWARD LENGTH=251;; (*ITAG) Solyc06g034110.2.1 (e_value=2e-65) genomic_reference:SL2.40ch06 gene_region:20378718-20384076 transcript_region:SL2.40ch06:20378718..20384076+ go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00010745g0004.1 protein AED:0.11 eAED:0.12 QI:0|0.8|0.66|0.83|1|1|6|0|229; (*SWP) sp|Q9MB46|VATE_CITUN (e_value=3e-117) V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1;; (*TAIR) AT3G08560.1 (e_value=8e-114) | Symbols: VHA-E2 | vacuolar H+-ATPase subunit E isoform 2 | chr3:2600130-2601907 FORWARD LENGTH=235;; (*ITAG) Solyc08g081910.2.1 (e_value=9e-117) genomic_reference:SL2.40ch08 gene_region:61988688-61993931 transcript_region:SL2.40ch08:61988688..61993931- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00005398g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|151; (*SWP) sp|Q9M041|BH140_ARATH (e_value=9e-29) Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1;; (*TAIR) AT5G01310.1 (e_value=7e-30) | Symbols: APTX | APRATAXIN-like | chr5:125304-128960 FORWARD LENGTH=912;; (*ITAG) Solyc09g005070.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:44909-45355 transcript_region:SL2.40ch09:44909..45355+ go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (Fragment) (AHRD V1 *-*- D6MK13_9ASPA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00030053g0002.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|1|1|2|0|186 NbS00030053g0003.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|2|0|138 NbS00019160g0007.1 protein AED:0.03 eAED:0.09 QI:0|0.33|0|1|0|0|4|0|468; (*SWP) sp|O49279|SKI15_ARATH (e_value=9e-143) SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1;; (*TAIR) AT1G76920.1 (e_value=7e-144) | Symbols: | F-box family protein | chr1:28892295-28893419 FORWARD LENGTH=374;; (*ITAG) Solyc04g071130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:55647119-55648252 transcript_region:SL2.40ch04:55647119..55648252- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9H7Q7_POPTR); contains Interpro domain(s) IPR011498 Kelch repeat type 2 "; GO:0005515,GO:0004842 NbS00019160g0006.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.2|1|1|5|0|91 NbS00023983g0005.1 protein AED:0.19 eAED:0.19 QI:166|0.83|0.85|1|1|1|7|283|642; (*SWP) sp|Q9LUQ5|UBC25_ARATH (e_value=5e-36) Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1;; (*TAIR) AT3G15355.1 (e_value=4e-37) | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme 25 | chr3:5183858-5186669 FORWARD LENGTH=609;; (*ITAG) Solyc12g013820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4603477-4609783 transcript_region:SL2.40ch12:4603477..4609783- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00002208g0017.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.6|0.8|0.66|0.8|10|0|284; (*SWP) sp|Q28EB4|NP1L1_XENTR (e_value=9e-35) Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1;; (*TAIR) AT2G19480.3 (e_value=6e-126) | Symbols: NAP1;2 | nucleosome assembly protein 1;2 | chr2:8438601-8441040 FORWARD LENGTH=372;; (*ITAG) Solyc05g018810.2.1 (e_value=2e-148) genomic_reference:SL2.40ch05 gene_region:23874894-23879625 transcript_region:SL2.40ch05:23874894..23879625+ go_terms:GO:0003677,GO:0042393 functional_description:"Nucleosome assembly protein 1-like protein 2 (AHRD V1 ***- Q70Z18_TOBAC); contains Interpro domain(s) IPR002164 Nucleosome assembly protein (NAP) "; GO:0003677,GO:0042393 NbS00002208g0013.1 protein AED:0.27 eAED:0.27 QI:256|1|1|1|0.4|0.5|6|828|116; (*SWP) sp|Q9ZUP2|RECA3_ARATH (e_value=2e-29) DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2;; (*TAIR) AT2G19490.1 (e_value=2e-30) | Symbols: | recA DNA recombination family protein | chr2:8441732-8444006 FORWARD LENGTH=430;; (*ITAG) Solyc05g055780.2.1 (e_value=4e-38) genomic_reference:SL2.40ch05 gene_region:64430011-64433675 transcript_region:SL2.40ch05:64430011..64433675- go_terms:GO:0003677 functional_description:"Protein recA (AHRD V1 ***- D1KB24_9GAMM); contains Interpro domain(s) IPR013765 RecA "; GO:0003677 NbS00002208g0001.1 protein AED:0.05 eAED:0.05 QI:151|1|0.71|1|1|1|7|310|884; (*SWP) sp|Q9LTS7|C3H65_ARATH (e_value=5e-41) Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis thaliana GN=EMB1789 PE=2 SV=1;; (*TAIR) AT5G56930.1 (e_value=4e-42) | Symbols: emb1789 | CCCH-type zinc finger family protein | chr5:23027949-23030565 REVERSE LENGTH=675;; (*ITAG) Solyc05g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3490284-3496454 transcript_region:SL2.40ch05:3490284..3496454+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 65 (AHRD V1 *-*- C3H65_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00002208g0016.1 protein AED:0.58 eAED:0.60 QI:0|0|0|0.5|0|0|2|0|66 NbS00036231g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|651; (*SWP) sp|Q0WN01|PP286_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g58590 OS=Arabidopsis thaliana GN=At3g58590 PE=2 SV=2;; (*TAIR) AT3G58590.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:21666262-21668487 FORWARD LENGTH=741;; (*ITAG) Solyc07g053380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59157996-59160257 transcript_region:SL2.40ch07:59157996..59160257- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LW55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00036231g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|70; (*ITAG) Solyc07g053370.1.1 (e_value=9e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59149441-59149704 transcript_region:SL2.40ch07:59149441..59149704- functional_description:"Unknown Protein (AHRD V1)"; NbS00017727g0016.1 protein AED:0.36 eAED:0.36 QI:134|0|0|1|0|0.5|2|0|153; (*TAIR) AT1G78020.1 (e_value=1e-26) | Symbols: | Protein of unknown function (DUF581) | chr1:29338787-29339491 FORWARD LENGTH=162;; (*ITAG) Solyc04g054760.2.1 (e_value=1e-48) genomic_reference:SL2.40ch04 gene_region:52350113-52351308 transcript_region:SL2.40ch04:52350113..52351308- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00017727g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|372; (*SWP) sp|Q8K2L8|TPC12_MOUSE (e_value=4e-26) Trafficking protein particle complex subunit 12 OS=Mus musculus GN=Trappc12 PE=1 SV=2;; (*TAIR) AT4G39820.1 (e_value=2e-139) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18476698-18477924 REVERSE LENGTH=408;; (*ITAG) Solyc05g051840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61386178-61387311 transcript_region:SL2.40ch05:61386178..61387311+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 15 (AHRD V1 **-- B6TY66_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017727g0013.1 protein AED:0.09 eAED:0.09 QI:71|0.75|0.88|1|0.75|0.66|9|244|516; (*SWP) sp|Q9LW96|INO1_TOBAC (e_value=0.0) Inositol-3-phosphate synthase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G10170.1 (e_value=0.0) | Symbols: ATMIPS3, MIPS3 | myo-inositol-1-phosphate synthase 3 | chr5:3187538-3190161 REVERSE LENGTH=510;; (*ITAG) Solyc05g051850.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61409236-61413326 transcript_region:SL2.40ch05:61409236..61413326+ go_terms:GO:0042802 functional_description:"Inositol-3-phosphate synthase (AHRD V1 ***- C4PW06_ARATH); contains Interpro domain(s) IPR002587 Myo-inositol-1-phosphate synthase "; GO:0042802 NbS00027401g0010.1 protein AED:0.03 eAED:0.03 QI:253|1|1|1|0.57|0.75|8|447|321; (*SWP) sp|O13828|DCP2_SCHPO (e_value=2e-64) mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp2 PE=1 SV=1;; (*TAIR) AT5G13570.1 (e_value=5e-159) | Symbols: DCP2, TDT, ATDCP2 | decapping 2 | chr5:4367532-4369992 FORWARD LENGTH=373;; (*ITAG) Solyc05g056110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64647274-64657456 transcript_region:SL2.40ch05:64647274..64657456- go_terms:GO:0042803 functional_description:"mRNA-decapping enzyme 2 (AHRD V1 ***- D3BA13_POLPA); contains Interpro domain(s) IPR007722 Dcp2, box A "; GO:0042803 NbS00027401g0012.1 protein AED:0.07 eAED:0.07 QI:640|1|1|1|1|1|2|486|342; (*SWP) sp|Q9SV30|GATA8_ARATH (e_value=1e-37) GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1;; (*TAIR) AT3G54810.1 (e_value=9e-39) | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GATA-type zinc finger transcription factor family protein | chr3:20296957-20298236 FORWARD LENGTH=322;; (*ITAG) Solyc05g056120.2.1 (e_value=4e-159) genomic_reference:SL2.40ch05 gene_region:64658159-64662581 transcript_region:SL2.40ch05:64658159..64662581- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00027401g0011.1 protein AED:0.26 eAED:0.26 QI:198|1|0.33|1|1|1|3|0|469; (*SWP) sp|Q9SKN2|DRB2_ARATH (e_value=1e-111) Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1;; (*TAIR) AT2G28380.1 (e_value=7e-113) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc05g056100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64618011-64624535 transcript_region:SL2.40ch05:64618011..64624535+ go_terms:GO:0005515,GO:0003725 functional_description:"Double-stranded RNA binding protein (AHRD V1 *-** A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005515,GO:0003725 NbS00005430g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|83; (*ITAG) Solyc11g068410.1.1 (e_value=6e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00005430g0007.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.37|0.42|0.62|8|0|214; (*SWP) sp|Q84J37|LAC15_ARATH (e_value=6e-63) Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1;; (*TAIR) AT5G48100.1 (e_value=5e-64) | Symbols: TT10, LAC15, ATLAC15 | Laccase/Diphenol oxidase family protein | chr5:19489530-19492582 REVERSE LENGTH=565;; (*ITAG) Solyc12g056820.1.1 (e_value=5e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48257800-48261484 transcript_region:SL2.40ch12:48257800..48261484- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00005430g0008.1 protein AED:0.00 eAED:0.14 QI:0|0|0|1|0|0|2|0|311; (*SWP) sp|P32980|ATPD_TOBAC (e_value=2e-114) ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1;; (*TAIR) AT4G09650.1 (e_value=7e-52) | Symbols: ATPD | ATP synthase delta-subunit gene | chr4:6100799-6101503 FORWARD LENGTH=234;; (*ITAG) Solyc12g056830.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48264644-48265396 transcript_region:SL2.40ch12:48264644..48265396+ go_terms:GO:0045261 functional_description:"ATP synthase delta subunit (AHRD V1 ***- Q7XYM8_BIGNA); contains Interpro domain(s) IPR000711 ATPase, F1 complex, OSCP/delta subunit "; GO:0045261 NbS00037447g0010.1 protein AED:0.31 eAED:0.32 QI:12|0.5|0.61|1|0.33|0.38|13|251|358; (*SWP) sp|Q8VYG2|GALAK_ARATH (e_value=4e-107) Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1;; (*TAIR) AT3G10700.1 (e_value=3e-108) | Symbols: GalAK | galacturonic acid kinase | chr3:3346789-3350863 REVERSE LENGTH=424;; (*ITAG) Solyc07g014640.2.1 (e_value=2e-165) genomic_reference:SL2.40ch07 gene_region:5018948-5030188 transcript_region:SL2.40ch07:5018948..5030188+ go_terms:GO:0016310,GO:0005737,GO:0046835 functional_description:"Galactokinase-like protein (AHRD V1 ***- Q9SG76_ARATH); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0016310,GO:0005737,GO:0046835 NbS00037447g0009.1 protein AED:0.41 eAED:0.41 QI:707|1|1|1|0.4|0.66|6|203|185; (*SWP) sp|Q9ZPX1|ARF5_ARATH (e_value=6e-101) Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1;; (*TAIR) AT2G18390.1 (e_value=4e-102) | Symbols: TTN5, HAL, ARL2, ATARLC1 | ADP-ribosylation factor family protein | chr2:7988335-7989374 FORWARD LENGTH=185;; (*ITAG) Solyc07g014650.2.1 (e_value=5e-110) genomic_reference:SL2.40ch07 gene_region:5030533-5038543 transcript_region:SL2.40ch07:5030533..5038543- go_terms:GO:0005095 functional_description:"ADP-ribosylation factor (AHRD V1 ***- B6TBI1_MAIZE); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005095 NbS00019856g0008.1 protein AED:0.06 eAED:0.07 QI:0|0.85|0.62|1|0.71|0.62|8|0|689; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=5e-76) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT1G43850.2 (e_value=4e-77) | Symbols: SEU | SEUSS transcriptional co-regulator | chr1:16617872-16621596 FORWARD LENGTH=877;; (*ITAG) Solyc11g005990.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:791164-796086 transcript_region:SL2.40ch11:791164..796086- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00019856g0007.1 protein AED:0.23 eAED:0.23 QI:260|1|0.90|1|1|1|11|0|613; (*SWP) sp|Q9FZ36|M3K2_ARATH (e_value=3e-92) Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1;; (*TAIR) AT1G53570.4 (e_value=0.0) | Symbols: MAP3KA | mitogen-activated protein kinase kinase kinase 3 | chr1:19987391-19990733 FORWARD LENGTH=608;; (*ITAG) Solyc11g006000.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:809687-815717 transcript_region:SL2.40ch11:809687..815717+ go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BP85_POLPA); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0006468 NbS00052086g0003.1 protein AED:0.06 eAED:0.06 QI:193|1|1|1|0.8|0.83|6|376|231; (*SWP) sp|Q5RBU2|RM46_PONAB (e_value=6e-18) 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46 PE=2 SV=1;; (*TAIR) AT1G14620.1 (e_value=4e-109) | Symbols: DECOY | decoy | chr1:5014948-5016501 REVERSE LENGTH=233;; (*ITAG) Solyc09g075370.2.1 (e_value=3e-153) genomic_reference:SL2.40ch09 gene_region:62589136-62593044 transcript_region:SL2.40ch09:62589136..62593044+ functional_description:"Mitochondrial ribosomal protein L46 (AHRD V1 ***- B0X635_CULQU)"; NbS00027235g0010.1 protein AED:0.13 eAED:0.13 QI:89|0.91|0.92|1|0.75|0.76|13|225|403; (*TAIR) AT4G28706.1 (e_value=3e-151) | Symbols: | pfkB-like carbohydrate kinase family protein | chr4:14167805-14170619 FORWARD LENGTH=401;; (*ITAG) Solyc08g078370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59360722-59365482 transcript_region:SL2.40ch08:59360722..59365482- go_terms:GO:0005515 functional_description:"Kinase pfkB family protein (AHRD V1 **-- Q7XDM4_ORYSJ); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00013602g0006.1 protein AED:0.14 eAED:0.16 QI:0|0.76|0.72|0.95|0.80|0.81|22|383|1003; (*SWP) sp|Q9SUE7|ATX4_ARATH (e_value=0.0) Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3;; (*TAIR) AT4G27910.1 (e_value=0.0) | Symbols: ATX4, SDG16 | SET domain protein 16 | chr4:13894694-13900256 FORWARD LENGTH=1027;; (*ITAG) Solyc01g095890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78775059-78787237 transcript_region:SL2.40ch01:78775059..78787237- go_terms:GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B3LSN4_YEAS1); contains Interpro domain(s) IPR001214 SET "; GO:0003677 NbS00013602g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.33|1|0|0|3|245|96 NbS00037487g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|0|0.5|2|0|518; (*SWP) sp|Q9MT28|THRC_SOLTU (e_value=0.0) Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G29840.1 (e_value=0.0) | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr4:14599434-14601014 REVERSE LENGTH=526;; (*ITAG) Solyc03g121910.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63979551-63981110 transcript_region:SL2.40ch03:63979551..63981110- go_terms:GO:0004795 functional_description:"Threonine synthase (AHRD V1 **** Q2Q021_SOYBN); contains Interpro domain(s) IPR004450 Threonine synthase "; GO:0004795 NbS00031081g0009.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|369; (*SWP) sp|P69781|GAT12_ARATH (e_value=8e-72) GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1;; (*TAIR) AT5G25830.1 (e_value=6e-73) | Symbols: GATA12 | GATA transcription factor 12 | chr5:9004398-9005502 REVERSE LENGTH=331;; (*ITAG) Solyc08g066510.2.1 (e_value=6e-151) genomic_reference:SL2.40ch08 gene_region:52447226-52448843 transcript_region:SL2.40ch08:52447226..52448843+ go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00031081g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.94|0.89|1|0.88|0.78|19|195|818; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0.0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.1 (e_value=0.0) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836;; (*ITAG) Solyc08g066500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52415522-52421037 transcript_region:SL2.40ch08:52415522..52421037- go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00031081g0011.1 protein AED:0.39 eAED:0.47 QI:0|0|0|0.66|0|0|3|0|105; (*ITAG) Solyc08g066520.2.1 (e_value=5e-17) genomic_reference:SL2.40ch08 gene_region:52456267-52463301 transcript_region:SL2.40ch08:52456267..52463301- functional_description:"Unknown Protein (AHRD V1)"; NbS00050871g0004.1 protein AED:0.34 eAED:0.35 QI:114|0.5|0.66|1|0|0|3|404|101; (*TAIR) AT2G33847.2 (e_value=5e-18) | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14320168-14320522 REVERSE LENGTH=89;; (*ITAG) Solyc07g053670.2.1 (e_value=2e-40) genomic_reference:SL2.40ch07 gene_region:59441366-59444178 transcript_region:SL2.40ch07:59441366..59444178+ functional_description:"Unknown Protein (AHRD V1)"; NbS00050871g0005.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|151; (*SWP) sp|O49453|Y4844_ARATH (e_value=6e-55) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT2G33845.1 (e_value=1e-59) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:14317781-14318712 FORWARD LENGTH=182;; (*ITAG) Solyc07g053690.2.1 (e_value=4e-77) genomic_reference:SL2.40ch07 gene_region:59452115-59454460 transcript_region:SL2.40ch07:59452115..59454460- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00054698g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.5|0|1|0.5|0.33|3|0|917; (*SWP) sp|O48724|WEB1_ARATH (e_value=0.0) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=0.0) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc07g022910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23226837-23229990 transcript_region:SL2.40ch07:23226837..23229990- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00054698g0008.1 protein AED:0.16 eAED:0.16 QI:0|0.75|0.8|1|1|1|5|0|230; (*SWP) sp|P27521|CA4_ARATH (e_value=1e-37) Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1;; (*TAIR) AT1G45474.2 (e_value=3e-78) | Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256;; (*ITAG) Solyc07g022900.2.1 (e_value=3e-91) genomic_reference:SL2.40ch07 gene_region:23224809-23226448 transcript_region:SL2.40ch07:23224809..23226448+ go_terms:GO:0031409 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 **** CA4_ARATH); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0031409 NbS00022029g0010.1 protein AED:0.09 eAED:0.10 QI:0|0.37|0.33|1|0.62|0.44|9|0|1358; (*SWP) sp|Q39203|SD22_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1;; (*TAIR) AT4G00340.1 (e_value=0.0) | Symbols: RLK4 | receptor-like protein kinase 4 | chr4:148958-151496 FORWARD LENGTH=818;; (*ITAG) Solyc01g094830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78001095-78008003 transcript_region:SL2.40ch01:78001095..78008003- go_terms:GO:0019199,GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q39203_ARATH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0019199,GO:0004674 NbS00022029g0009.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.5|1|0|0|4|404|119; (*SWP) sp|Q8LE94|RING3_ARATH (e_value=2e-21) E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1;; (*TAIR) AT5G41350.1 (e_value=1e-25) | Symbols: | RING/U-box superfamily protein | chr5:16542026-16543092 REVERSE LENGTH=212;; (*ITAG) Solyc01g094840.2.1 (e_value=9e-59) genomic_reference:SL2.40ch01 gene_region:78010335-78012388 transcript_region:SL2.40ch01:78010335..78012388- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00044888g0005.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|0|0|2|0|180; (*ITAG) Solyc01g056230.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00044888g0004.1 protein AED:0.47 eAED:0.70 QI:0|0|0|1|0|0|2|0|77 NbS00042951g0006.1 protein AED:0.07 eAED:0.09 QI:0|0.25|0|1|0.25|0.2|5|0|445; (*SWP) sp|P13744|11SB_CUCMA (e_value=6e-112) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=2e-88) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc03g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00006727g0004.1 protein AED:0.56 eAED:0.67 QI:0|0.22|0|0.5|1|1|10|0|464; (*TAIR) AT4G24580.1 (e_value=5e-19) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=2e-60) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00043909g0003.1 protein AED:0.18 eAED:0.19 QI:194|0|0.5|1|0|0.5|2|0|385; (*SWP) sp|Q9C6Z0|FBK17_ARATH (e_value=5e-180) F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1;; (*TAIR) AT1G30090.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:10559746-10560942 REVERSE LENGTH=398;; (*ITAG) Solyc02g021600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13959590-13960798 transcript_region:SL2.40ch02:13959590..13960798+ functional_description:"Kelch-like protein 14 (AHRD V1 *-*- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00059407g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|3|0|138; (*SWP) sp|P06005|PSBD_SPIOL (e_value=4e-44) Photosystem II D2 protein OS=Spinacia oleracea GN=psbD PE=1 SV=3;; (*ITAG) ATCG00270.1 (e_value=3e-45) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353;; (*ITAG) Solyc09g055950.1.1 (e_value=5e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:41860254-41860756 transcript_region:SL2.40ch09:41860254..41860756+ go_terms:GO:0030077 functional_description:"Photosystem II D2 protein (AHRD V1 ***- D3WE71_9MAGN); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00023248g0008.1 protein AED:0.15 eAED:0.15 QI:182|0.75|1|1|0.75|0.6|5|129|387; (*SWP) sp|Q54PA0|MPI_DICDI (e_value=3e-57) Probable mannose-6-phosphate isomerase OS=Dictyostelium discoideum GN=mpi PE=3 SV=1;; (*TAIR) AT1G67070.1 (e_value=3e-131) | Symbols: DIN9, PMI2 | Mannose-6-phosphate isomerase, type I | chr1:25042324-25044412 FORWARD LENGTH=441;; (*ITAG) Solyc02g086090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43444795-43448837 transcript_region:SL2.40ch02:43444795..43448837- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 1.1"; GO:0004476 NbS00023248g0002.1 protein AED:0.25 eAED:0.25 QI:693|1|1|1|1|1|2|530|94; (*ITAG) Solyc02g086080.2.1 (e_value=3e-54) genomic_reference:SL2.40ch02 gene_region:43441149-43444197 transcript_region:SL2.40ch02:43441149..43444197+ functional_description:"Alpha/beta hydrolase fold (AHRD V1 ***- A1T9R4_MYCVP); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00023248g0007.1 protein AED:0.17 eAED:0.64 QI:0|0|0|0.66|0|0.33|3|129|11 NbS00012317g0006.1 protein AED:0.22 eAED:0.24 QI:39|0.91|0.83|1|0.65|0.66|24|0|1061; (*SWP) sp|Q5R5R2|HEAT6_PONAB (e_value=2e-25) HEAT repeat-containing protein 6 OS=Pongo abelii GN=HEATR6 PE=2 SV=1;; (*TAIR) AT4G38120.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr4:17888668-17896060 REVERSE LENGTH=1165;; (*ITAG) Solyc07g008450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3328517-3357899 transcript_region:SL2.40ch07:3328517..3357899- go_terms:GO:0005488 functional_description:"HEAT repeat-containing protein (AHRD V1 *-*- D3B2P5_POLPA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00012317g0114.1 protein AED:0.17 eAED:0.20 QI:0|0.42|0.5|1|0.42|0.37|8|759|737 NbS00061768g0003.1 protein AED:0.42 eAED:0.84 QI:0|0|0|0.75|1|1|4|0|113; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=1e-33) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=8e-35) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00006941g0001.1 protein AED:0.33 eAED:0.43 QI:0|0|0|1|0|0|3|0|124; (*TAIR) AT3G45650.1 (e_value=2e-14) | Symbols: NAXT1 | nitrate excretion transporter1 | chr3:16759253-16761266 FORWARD LENGTH=558;; (*ITAG) Solyc06g075480.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:43228038-43231236 transcript_region:SL2.40ch06:43228038..43231236- go_terms:GO:0080054,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00006941g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|81; (*ITAG) Solyc11g072580.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52832097-52834718 transcript_region:SL2.40ch11:52832097..52834718- go_terms:GO:0016020,GO:0031177 functional_description:"Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7LMP9_ARALY); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0031177 NbS00002298g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.55|1|1|1|9|0|332; (*SWP) sp|P19446|MDHG_CITLA (e_value=0.0) Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT2G22780.1 (e_value=0.0) | Symbols: PMDH1 | peroxisomal NAD-malate dehydrogenase 1 | chr2:9689995-9691923 REVERSE LENGTH=354;; (*ITAG) Solyc01g106480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86121621-86124841 transcript_region:SL2.40ch01:86121621..86124841- go_terms:GO:0008152,GO:0005975,GO:0055114 functional_description:"Malate dehydrogenase (AHRD V1 ***- A5BEJ8_VITVI); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0008152,GO:0005975,GO:0055114 NbS00002298g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.33|0.66|1|1|3|0|429; (*TAIR) AT5G64510.1 (e_value=0.0) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00002298g0011.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|94; (*SWP) sp|Q9LM69|ATL80_ARATH (e_value=2e-31) RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1 SV=1;; (*TAIR) AT1G20823.1 (e_value=2e-32) | Symbols: | RING/U-box superfamily protein | chr1:7238880-7239473 FORWARD LENGTH=197;; (*ITAG) Solyc02g082420.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:40689497-40691408 transcript_region:SL2.40ch02:40689497..40691408- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033519g0011.1 protein AED:0.33 eAED:0.33 QI:199|1|1|1|0.66|0.61|13|180|488; (*SWP) sp|O75912|DGKI_HUMAN (e_value=9e-38) Diacylglycerol kinase iota OS=Homo sapiens GN=DGKI PE=1 SV=1;; (*TAIR) AT4G30340.1 (e_value=0.0) | Symbols: ATDGK7, DGK7 | diacylglycerol kinase 7 | chr4:14838465-14840941 REVERSE LENGTH=492;; (*ITAG) Solyc07g006580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1387329-1406463 transcript_region:SL2.40ch07:1387329..1406463+ go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 7 (AHRD V1 **** B0KYU1_ARATH); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0004143 NbS00033519g0007.1 protein AED:0.37 eAED:0.44 QI:0|0|0|1|1|1|2|0|86; (*TAIR) AT2G04795.1 (e_value=2e-11) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1683027-1683314 FORWARD LENGTH=95;; (*ITAG) Solyc07g006590.1.1 (e_value=2e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1425483-1425749 transcript_region:SL2.40ch07:1425483..1425749+ functional_description:"Unknown Protein (AHRD V1)"; NbS00061014g0003.1 protein AED:0.15 eAED:0.15 QI:194|1|1|1|0.6|0.83|6|102|256; (*SWP) sp|Q9SRM5|CPR49_ARATH (e_value=7e-144) GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1;; (*TAIR) AT3G11210.1 (e_value=6e-145) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256;; (*ITAG) Solyc06g051720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31754191-31758216 transcript_region:SL2.40ch06:31754191..31758216- go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6T5T9_MAIZE); contains Interpro domain(s) IPR013831 Esterase, SGNH hydrolase-type, subgroup "; GO:0004091 NbS00000778g0009.1 protein AED:0.47 eAED:0.49 QI:0|0.8|0.5|1|1|1|6|0|141; (*SWP) sp|Q8K0H5|TAF10_MOUSE (e_value=4e-31) Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1;; (*TAIR) AT4G31720.1 (e_value=1e-67) | Symbols: TAFII15, TAF10, STG1 | TBP-associated factor II 15 | chr4:15354223-15355704 REVERSE LENGTH=134;; (*ITAG) Solyc12g096470.1.1 (e_value=8e-84) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63718803-63721861 transcript_region:SL2.40ch12:63718803..63721861- go_terms:GO:0016251 functional_description:"Transcription initiation factor TFIID subunit 10 (AHRD V1 **** C1BGY2_ONCMY); contains Interpro domain(s) IPR003923 Transcription initiation factor TFIID, 23-30 kDa subunit "; GO:0016251 NbS00000778g0010.1 protein AED:0.37 eAED:0.38 QI:0|0|0.33|0.66|0.5|0.33|3|0|309; (*TAIR) AT4G31410.2 (e_value=3e-113) | Symbols: | Protein of unknown function (DUF1644) | chr4:15244259-15245474 FORWARD LENGTH=308;; (*ITAG) Solyc12g096460.1.1 (e_value=1e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63715796-63717959 transcript_region:SL2.40ch12:63715796..63717959+ functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00034268g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|0.85|0.75|8|555|477; (*SWP) sp|Q42942|UMPS_TOBAC (e_value=0.0) Uridine 5'-monophosphate synthase (Fragment) OS=Nicotiana tabacum GN=PYR5-6 PE=2 SV=1;; (*TAIR) AT3G54470.1 (e_value=0.0) | Symbols: | uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) | chr3:20168285-20170245 REVERSE LENGTH=476;; (*ITAG) Solyc11g068830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50519655-50524370 transcript_region:SL2.40ch11:50519655..50524370+ go_terms:GO:0004588,GO:0004590 functional_description:"Orotidine 5&apos-phosphate decarboxylase (Orotate phosphoribosyltransferase) (AHRD V1 **** C4QAV6_SCHMA); contains Interpro domain(s) IPR001754 Orotidine 5'-phosphate decarboxylase, core "; GO:0004588,GO:0004590 NbS00009352g0003.1 protein AED:0.39 eAED:0.41 QI:294|0.33|0.28|0.85|1|1|7|0|196; (*TAIR) AT1G50910.1 (e_value=9e-47) | Symbols: | unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). | chr1:18867083-18869839 REVERSE LENGTH=500;; (*ITAG) Solyc07g064300.2.1 (e_value=6e-80) genomic_reference:SL2.40ch07 gene_region:63733504-63738297 transcript_region:SL2.40ch07:63733504..63738297+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005121g0101.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|222 NbS00005121g0104.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|1|1|2|0|95 NbS00008662g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0.8|1|1|1|5|0|455; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=0.0) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1;; (*TAIR) AT5G63110.1 (e_value=0.0) | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471;; (*ITAG) Solyc06g071680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00008662g0002.1 protein AED:0.25 eAED:0.28 QI:0|0|0|1|1|1|2|0|184; (*TAIR) AT5G63100.1 (e_value=3e-63) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25314434-25315423 REVERSE LENGTH=329;; (*ITAG) Solyc06g071670.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40534042-40535037 transcript_region:SL2.40ch06:40534042..40535037- functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 ***- Q9LU06_ARATH)"; NbS00027685g0010.1 protein AED:0.01 eAED:0.01 QI:318|1|0.9|1|0.88|0.9|10|0|372; (*SWP) sp|Q94FN2|MOR1_ARATH (e_value=0.0) Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1;; (*TAIR) AT2G35630.1 (e_value=0.0) | Symbols: MOR1, GEM1 | ARM repeat superfamily protein | chr2:14966828-14980361 FORWARD LENGTH=1978;; (*ITAG) Solyc02g078640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37856990-37880778 transcript_region:SL2.40ch02:37856990..37880778- go_terms:GO:0008017 functional_description:"Microtubule associated protein (AHRD V1 *--* A8J2Q6_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00014776g0005.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|136; (*TAIR) AT1G06340.1 (e_value=3e-28) | Symbols: | Plant Tudor-like protein | chr1:1933583-1933987 REVERSE LENGTH=134;; (*ITAG) Solyc06g072450.1.1 (e_value=4e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41080201-41080725 transcript_region:SL2.40ch06:41080201..41080725- go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7KG24_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003723 NbS00014776g0016.1 protein AED:0.31 eAED:0.32 QI:0|0.77|0.5|0.9|0.66|0.7|10|0|355; (*TAIR) AT2G31040.1 (e_value=4e-142) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc12g010870.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3785577-3790200 transcript_region:SL2.40ch12:3785577..3790200+ functional_description:"ATP synthase I-like protein (AHRD V1 ***- A8HNA8_CHLRE)"; NbS00014776g0018.1 protein AED:0.34 eAED:0.44 QI:0|0|0|0.8|0|0|5|0|280; (*ITAG) Solyc01g066180.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:65627120-65629080 transcript_region:SL2.40ch01:65627120..65629080- functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9ZUQ8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00014776g0015.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|0|0|2|0|196; (*TAIR) AT3G58630.1 (e_value=1e-15) | Symbols: | sequence-specific DNA binding transcription factors | chr3:21683928-21685771 REVERSE LENGTH=321;; (*ITAG) Solyc12g010890.1.1 (e_value=4e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3792736-3796034 transcript_region:SL2.40ch12:3792736..3796034- functional_description:"Transcription factor (AHRD V1 **-- D7LW59_ARALY)"; NbC25983181g0004.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|0|0|2|0|53; (*TAIR) AT5G01960.1 (e_value=1e-23) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc06g048520.2.1 (e_value=4e-26) genomic_reference:SL2.40ch06 gene_region:27667290-27675248 transcript_region:SL2.40ch06:27667290..27675248- go_terms:GO:0008270 functional_description:"RING finger and transmembrane domain-containing protein 2 (AHRD V1 **-- RNFT2_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010766g0112.1 protein AED:0.31 eAED:0.31 QI:0|0|0.5|1|0|0|2|0|267 NbS00010766g0111.1 protein AED:0.72 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|77 NbS00010766g0110.1 protein AED:0.09 eAED:0.12 QI:23|0.87|0.77|1|0.75|0.55|9|0|1390 NbS00025616g0001.1 protein AED:0.08 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|699; (*TAIR) AT5G64360.1 (e_value=3e-27) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:25737208-25738602 REVERSE LENGTH=422;; (*ITAG) Solyc11g006170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:918328-920277 transcript_region:SL2.40ch11:918328..920277- go_terms:GO:0016021,GO:0031072 functional_description:"DnaJ (Fragment) (AHRD V1 *-*- Q6V8R7_MALDO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0016021,GO:0031072 NbS00017793g0005.1 protein AED:0.23 eAED:0.28 QI:124|0.62|0.55|1|0.62|0.77|9|0|477; (*SWP) sp|P92934|AAP6_ARATH (e_value=0.0) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=0.0) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc12g088190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62073059-62079787 transcript_region:SL2.40ch12:62073059..62079787+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00055697g0003.1 protein AED:0.10 eAED:0.10 QI:321|0.5|0.33|1|0.5|0.66|3|0|689; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=1e-133) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G25390.1 (e_value=2e-164) | Symbols: | Protein kinase superfamily protein | chr1:8906640-8908800 REVERSE LENGTH=629;; (*ITAG) Solyc05g008990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3177653-3180493 transcript_region:SL2.40ch05:3177653..3180493+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021136g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.83|1|0.8|0.66|6|248|251; (*SWP) sp|P93830|IAA17_ARATH (e_value=6e-66) Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2;; (*TAIR) AT1G04250.1 (e_value=5e-67) | Symbols: AXR3, IAA17 | AUX/IAA transcriptional regulator family protein | chr1:1136382-1138340 FORWARD LENGTH=229;; (*ITAG) Solyc03g120390.2.1 (e_value=2e-125) genomic_reference:SL2.40ch03 gene_region:62863354-62864903 transcript_region:SL2.40ch03:62863354..62864903+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00021122g0006.1 protein AED:0.01 eAED:0.01 QI:137|1|1|1|1|1|2|861|142; (*ITAG) Solyc10g081100.1.1 (e_value=8e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61573572-61575473 transcript_region:SL2.40ch10:61573572..61575473+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021122g0007.1 protein AED:0.11 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|1390; (*SWP) sp|O57683|SF3B1_XENLA (e_value=0.0) Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1;; (*TAIR) AT5G64270.1 (e_value=0.0) | Symbols: | splicing factor, putative | chr5:25706909-25710718 FORWARD LENGTH=1269;; (*ITAG) Solyc10g081070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61569038-61571150 transcript_region:SL2.40ch10:61569038..61571150+ go_terms:GO:0005488 functional_description:"Splicing factor 3B subunit 1 (AHRD V1 **-- D0N488_PHYIN); contains Interpro domain(s) IPR015016 Splicing factor 3B subunit 1 "; GO:0005488 NbS00045777g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.85|0.62|1|1|1|8|466|370; (*TAIR) AT4G14740.3 (e_value=2e-77) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr4:8450567-8452679 REVERSE LENGTH=336;; (*ITAG) Solyc09g082580.2.1 (e_value=1e-101) genomic_reference:SL2.40ch09 gene_region:63719760-63723497 transcript_region:SL2.40ch09:63719760..63723497+ go_terms:GO:0035091 functional_description:"Os12g0604200 protein (Fragment) (AHRD V1 *-*- Q0IM29_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00037627g0001.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|320; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=5e-63) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36140.1 (e_value=1e-82) | Symbols: CYP716A2 | cytochrome P450, family 716, subfamily A, polypeptide 2 | chr5:14212212-14213259 REVERSE LENGTH=318;; (*ITAG) Solyc07g042880.1.1 (e_value=4e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53723939-53726909 transcript_region:SL2.40ch07:53723939..53726909+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00024295g0001.1 protein AED:0.11 eAED:0.17 QI:0|0|0|1|1|1|2|0|315; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=1e-42) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G13810.1 (e_value=7e-81) | Symbols: | Glutaredoxin family protein | chr5:4455769-4456593 FORWARD LENGTH=274;; (*ITAG) Solyc03g078380.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44318708-44319493 transcript_region:SL2.40ch03:44318708..44319493+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7M5W6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00024295g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|1550; (*SWP) sp|Q39202|RLK1_ARATH (e_value=2e-115) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=2e-114) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc03g078370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:44269241-44271610 transcript_region:SL2.40ch03:44269241..44271610+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00001502g0001.1 protein AED:0.27 eAED:0.35 QI:0|0|0|1|1|1|2|0|208 NbS00001502g0003.1 protein AED:0.49 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|67 NbS00058801g0011.1 protein AED:0.32 eAED:0.32 QI:119|0.81|0.58|1|0.72|0.75|12|0|545; (*TAIR) AT2G03070.1 (e_value=5e-107) | Symbols: MED8 | mediator subunit 8 | chr2:905978-908792 FORWARD LENGTH=524;; (*ITAG) Solyc03g123960.2.1 (e_value=6e-174) genomic_reference:SL2.40ch03 gene_region:64704384-64715097 transcript_region:SL2.40ch03:64704384..64715097+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058801g0012.1 protein AED:0.07 eAED:0.07 QI:58|0.6|0.66|1|0.6|0.5|6|464|329; (*SWP) sp|Q38899|ORC2_ARATH (e_value=3e-144) Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1;; (*TAIR) AT2G37560.1 (e_value=3e-145) | Symbols: ORC2, ATORC2 | origin recognition complex second largest subunit 2 | chr2:15759568-15761116 FORWARD LENGTH=363;; (*ITAG) Solyc06g073510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41699563-41703139 transcript_region:SL2.40ch06:41699563..41703139+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 2 (AHRD V1 ***- Q9XFD6_ORYSJ); contains Interpro domain(s) IPR007220 Origin recognition complex subunit 2 "; GO:0042802 NbS00002054g0022.1 protein AED:0.20 eAED:0.20 QI:213|0.66|0.7|1|0.55|0.7|10|0|697; (*SWP) sp|Q8BY89|CTL2_MOUSE (e_value=3e-40) Choline transporter-like protein 2 OS=Mus musculus GN=Slc44a2 PE=1 SV=2;; (*TAIR) AT3G15380.1 (e_value=0.0) | Symbols: | Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700;; (*ITAG) Solyc07g063230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62973618-62979170 transcript_region:SL2.40ch07:62973618..62979170+ functional_description:"Choline transporter like family (AHRD V1 ***- C1E2U6_9CHLO); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00002054g0016.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.25|1|0.33|0.25|4|0|471; (*SWP) sp|Q84JR3|PP334_ARATH (e_value=6e-124) Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1;; (*TAIR) AT4G21705.1 (e_value=5e-125) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11533257-11534817 REVERSE LENGTH=492;; (*ITAG) Solyc07g063220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62968329-62971690 transcript_region:SL2.40ch07:62968329..62971690+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002054g0018.1 protein AED:0.77 eAED:0.91 QI:0|0|0|0.5|1|0.75|4|0|130; (*TAIR) AT3G15420.1 (e_value=2e-31) | Symbols: | Transcription factor TFIIIC, tau55-related protein | chr3:5207704-5208289 REVERSE LENGTH=107;; (*ITAG) Solyc07g063290.2.1 (e_value=1e-65) genomic_reference:SL2.40ch07 gene_region:63018202-63022291 transcript_region:SL2.40ch07:63018202..63022291- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019481 Transcription factor TFIIIC, tau55-related "; NbS00002054g0019.1 protein AED:0.07 eAED:0.09 QI:0|0.57|0.5|1|0.71|0.62|8|0|435; (*TAIR) AT3G15390.1 (e_value=3e-20) | Symbols: SDE5 | silencing defective 5 | chr3:5196689-5199531 REVERSE LENGTH=490;; (*ITAG) Solyc07g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62979495-62988936 transcript_region:SL2.40ch07:62979495..62988936- functional_description:"Genomic DNA chromosome 3 P1 clone MJK13 (AHRD V1 **-- Q9LUQ3_ARATH); contains Interpro domain(s) IPR013899 Region of unknown function DUF1771 "; NbS00051139g0008.1 protein AED:0.34 eAED:0.34 QI:95|1|1|1|1|1|3|866|197; (*SWP) sp|Q0JFN7|RH58_ORYSJ (e_value=4e-20) DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0970600 PE=2 SV=2;; (*TAIR) AT5G19210.2 (e_value=9e-20) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:6461444-6463687 FORWARD LENGTH=472;; (*ITAG) Solyc01g079800.2.1 (e_value=4e-41) genomic_reference:SL2.40ch01 gene_region:71438380-71444159 transcript_region:SL2.40ch01:71438380..71444159- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A0YWB9_LYNSP); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00051139g0006.1 protein AED:0.19 eAED:0.19 QI:1179|0.92|0.93|1|1|1|15|876|266; (*SWP) sp|P55243|GLGL3_SOLTU (e_value=1e-180) Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1;; (*TAIR) AT5G19220.1 (e_value=5e-174) | Symbols: ADG2, APL1 | ADP glucose pyrophosphorylase large subunit 1 | chr5:6463931-6466775 REVERSE LENGTH=522;; (*ITAG) Solyc01g079790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71433353-71437595 transcript_region:SL2.40ch01:71433353..71437595+ go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** P93230_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00006630g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|145; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=7e-36) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=1e-35) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=3e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00006630g0006.1 protein AED:0.52 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|75 NbS00006630g0102.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|279 NbS00006630g0101.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|313 NbS00006630g0103.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|116 NbS00023491g0002.1 protein AED:0.24 eAED:0.30 QI:0|0|0|1|1|1|2|0|148; (*SWP) sp|Q9SFD8|NFYB9_ARATH (e_value=3e-26) Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=2e-27) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc07g065580.1.1 (e_value=3e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:64510822-64511445 transcript_region:SL2.40ch07:64510822..64511445+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-** B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00013440g0003.1 protein AED:0.01 eAED:0.01 QI:70|1|1|1|0|0|3|276|181; (*SWP) sp|A7PHN8|CSPL4_VITVI (e_value=2e-34) CASP-like protein VIT_17s0000g00560 OS=Vitis vinifera GN=VIT_17s0000g00560 PE=2 SV=2;; (*TAIR) AT4G25040.1 (e_value=5e-18) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:12868320-12869319 FORWARD LENGTH=170;; (*ITAG) Solyc03g097720.2.1 (e_value=1e-57) genomic_reference:SL2.40ch03 gene_region:53516069-53518394 transcript_region:SL2.40ch03:53516069..53518394+ functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00013440g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0|0|3|0|151; (*SWP) sp|B9I3X5|CSPL3_POPTR (e_value=8e-24) CASP-like protein POPTRDRAFT_823430 OS=Populus trichocarpa GN=POPTRDRAFT_823430 PE=3 SV=1;; (*ITAG) Solyc03g097730.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53520749-53521685 transcript_region:SL2.40ch03:53520749..53521685+ functional_description:"UPF0497 membrane protein 8 (AHRD V1 ***- U4978_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00012724g0013.1 protein AED:0.04 eAED:0.04 QI:471|1|0.75|1|1|1|4|0|654; (*SWP) sp|Q94A73|Y5656_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2;; (*TAIR) AT5G66560.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26564368-26566662 FORWARD LENGTH=668;; (*ITAG) Solyc02g090070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46291959-46294771 transcript_region:SL2.40ch02:46291959..46294771- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMF7_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00012724g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.33|1|0.8|0.66|6|0|456; (*TAIR) AT4G37210.1 (e_value=2e-118) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17512376-17514421 FORWARD LENGTH=492;; (*ITAG) Solyc02g090090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46298779-46304517 transcript_region:SL2.40ch02:46298779..46304517- functional_description:"TPR domain containing protein (AHRD V1 ***- B6TDD9_MAIZE); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; NbS00011426g0004.1 protein AED:0.03 eAED:0.03 QI:48|1|0.5|1|1|1|2|0|244; (*TAIR) AT4G31330.1 (e_value=5e-106) | Symbols: | Protein of unknown function, DUF599 | chr4:15202354-15203151 FORWARD LENGTH=239;; (*ITAG) Solyc08g006100.2.1 (e_value=2e-128) genomic_reference:SL2.40ch08 gene_region:845007-846530 transcript_region:SL2.40ch08:845007..846530+ functional_description:"DUF599 family protein (AHRD V1 ***- Q8T1D5_DICDI); contains Interpro domain(s) IPR006747 Protein of unknown function DUF599 "; NbS00011426g0005.1 protein AED:0.67 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|112 NbS00015215g0002.1 protein AED:0.07 eAED:0.07 QI:1792|1|1|1|0.75|0.4|5|14|403; (*SWP) sp|Q8S2A7|FTSH3_ORYSJ (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1;; (*TAIR) AT2G29080.1 (e_value=0.0) | Symbols: ftsh3 | FTSH protease 3 | chr2:12489911-12492999 REVERSE LENGTH=809;; (*ITAG) Solyc10g086540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64651404-64655263 transcript_region:SL2.40ch10:64651404..64655263- go_terms:GO:0051082,GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_BACSU); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0051082,GO:0004176 NbS00026176g0009.1 protein AED:0.09 eAED:0.09 QI:252|1|0.66|1|0.5|0.66|3|0|186; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=4e-77) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=4e-92) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=6e-94) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00026176g0008.1 protein AED:0.38 eAED:0.39 QI:89|0.66|0.25|1|0.33|0.5|4|0|160; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=4e-86) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=1e-89) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=2e-90) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00026176g0002.1 protein AED:0.44 eAED:0.44 QI:0|0.5|0|0.66|1|1|3|0|265; (*SWP) sp|Q6P2Q9|PRP8_HUMAN (e_value=3e-64) Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=3e-84) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=4e-98) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00009665g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.88|0.7|1|0.55|0.5|10|389|916; (*TAIR) AT2G46980.2 (e_value=3e-29) | Symbols: | unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). | chr2:19299868-19303429 REVERSE LENGTH=793;; (*ITAG) Solyc01g079080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70658456-70664129 transcript_region:SL2.40ch01:70658456..70664129- functional_description:"Coiled-coil protein (AHRD V1 *-*- B9G5N1_ORYSJ)"; NbS00002370g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|103; (*SWP) sp|Q9SB67|NRT32_ARATH (e_value=1e-31) High-affinity nitrate transporter 3.2 OS=Arabidopsis thaliana GN=NRT3.2 PE=2 SV=1;; (*TAIR) AT4G24730.1 (e_value=3e-31) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12749879-12753631 REVERSE LENGTH=443;; (*ITAG) Solyc03g112100.2.1 (e_value=1e-49) genomic_reference:SL2.40ch03 gene_region:56672702-56674150 transcript_region:SL2.40ch03:56672702..56674150- go_terms:GO:0015112 functional_description:"Component of high affinity nitrate transporter (AHRD V1 **-* D2KTV0_LOTJA); contains Interpro domain(s) IPR016605 Transporter, high affinity nitrate, Nar2 "; GO:0015112 NbS00007769g0002.1 protein AED:0.17 eAED:0.17 QI:198|1|0.5|1|0|0.5|2|0|257; (*SWP) sp|Q9STF9|PP266_ARATH (e_value=2e-108) Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1;; (*TAIR) AT3G46870.1 (e_value=2e-109) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17263011-17264022 FORWARD LENGTH=257;; (*ITAG) Solyc09g092360.2.1 (e_value=9e-149) genomic_reference:SL2.40ch09 gene_region:66827771-66829521 transcript_region:SL2.40ch09:66827771..66829521- go_terms:GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270 NbS00007769g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.83|1|0.8|0.66|6|963|305; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=1e-76) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT4G13870.2 (e_value=1e-77) | Symbols: WRNEXO | Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=288;; (*ITAG) Solyc09g092340.2.1 (e_value=6e-164) genomic_reference:SL2.40ch09 gene_region:66820687-66824709 transcript_region:SL2.40ch09:66820687..66824709- go_terms:GO:0008408 functional_description:"3&apos-5&apos exonuclease domain protein (AHRD V1 *-** D7IW34_9BACE); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0008408 NbS00043817g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.66|0|1|1|1|4|0|1161; (*SWP) sp|P29130|PHYB_TOBAC (e_value=0.0) Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2;; (*TAIR) AT2G18790.1 (e_value=0.0) | Symbols: PHYB, HY3, OOP1 | phytochrome B | chr2:8140079-8144151 FORWARD LENGTH=1172;; (*ITAG) Solyc01g059870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61760931-61767869 transcript_region:SL2.40ch01:61760931..61767869- go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome B1"; GO:0042802,GO:0009883 NbS00043817g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.93|0.93|1|1|1|16|326|588; (*SWP) sp|Q93VT8|ACLB1_ORYSJ (e_value=0.0) ATP-citrate synthase beta chain protein 1 OS=Oryza sativa subsp. japonica GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT5G49460.1 (e_value=0.0) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc01g059880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:61770639-61776611 transcript_region:SL2.40ch01:61770639..61776611- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00026747g0004.1 protein AED:0.24 eAED:0.25 QI:0|0.6|0.45|0.90|0.9|0.90|11|0|634; (*SWP) sp|Q55750|MFD_SYNY3 (e_value=7e-119) Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mfd PE=3 SV=1;; (*TAIR) AT3G02060.1 (e_value=0.0) | Symbols: | DEAD/DEAH box helicase, putative | chr3:354409-358319 FORWARD LENGTH=823;; (*ITAG) Solyc02g094590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49704269-49721577 transcript_region:SL2.40ch02:49704269..49721577+ go_terms:GO:0008026,GO:0005524,GO:0006355,GO:0006281 functional_description:"Transcription-repair coupling factor (AHRD V1 ***- B4WRL4_9SYNE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524,GO:0006355,GO:0006281 NbS00008323g0004.1 protein AED:0.09 eAED:0.09 QI:36|1|0.5|1|1|1|2|0|126 NbS00017851g0005.1 protein AED:0.31 eAED:0.32 QI:0|0.5|0.33|1|0|0|3|0|115; (*SWP) sp|P68174|STSY_RAUMA (e_value=2e-17) Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1;; (*TAIR) AT1G08470.1 (e_value=1e-52) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc06g073910.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:42017256-42019960 transcript_region:SL2.40ch06:42017256..42019960+ go_terms:GO:0004064 functional_description:"Strictosidine synthase (AHRD V1 ***- B6TK54_MAIZE); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0004064 NbS00038043g0009.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|564; (*SWP) sp|Q8W4E1|RH47_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 47, mitochondrial OS=Arabidopsis thaliana GN=RH47 PE=1 SV=2;; (*TAIR) AT1G12770.1 (e_value=0.0) | Symbols: ISE1, EMB1586 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:4351888-4353543 FORWARD LENGTH=551;; (*ITAG) Solyc08g080550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60991283-60992929 transcript_region:SL2.40ch08:60991283..60992929+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase DeaD (AHRD V1 **** C5ZVH9_9HELI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00038043g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|101; (*ITAG) Solyc08g080560.1.1 (e_value=6e-12) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:60994552-60994842 transcript_region:SL2.40ch08:60994552..60994842- functional_description:"Unknown Protein (AHRD V1)"; NbS00038043g0015.1 protein AED:0.14 eAED:0.14 QI:0|1|0.88|1|1|1|9|0|351; (*SWP) sp|Q43070|GALE1_PEA (e_value=0.0) UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1;; (*TAIR) AT1G12780.1 (e_value=0.0) | Symbols: UGE1, ATUGE1 | UDP-D-glucose/UDP-D-galactose 4-epimerase 1 | chr1:4356124-4358120 REVERSE LENGTH=351;; (*ITAG) Solyc08g080570.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60995122-60998260 transcript_region:SL2.40ch08:60995122..60998260- go_terms:GO:0003978,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** B0M3E8_PEA); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0003978,GO:0042803 NbS00038043g0003.1 protein AED:0.16 eAED:0.17 QI:27|0.5|0.33|1|1|1|3|0|355; (*SWP) sp|Q9T0D3|HFB2B_ARATH (e_value=5e-62) Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1;; (*TAIR) AT4G11660.1 (e_value=4e-63) | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding transcription factor family protein | chr4:7043006-7044227 FORWARD LENGTH=377;; (*ITAG) Solyc08g080540.2.1 (e_value=8e-77) genomic_reference:SL2.40ch08 gene_region:60985869-60987278 transcript_region:SL2.40ch08:60985869..60987278- go_terms:GO:0003677,GO:0016564 functional_description:"Heat stress transcription factor (AHRD V1 *-** D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677,GO:0016564 NbS00021775g0001.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|337; (*SWP) sp|Q9M8L2|FBK30_ARATH (e_value=3e-98) F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1;; (*TAIR) AT1G80440.1 (e_value=2e-99) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:30241763-30242827 FORWARD LENGTH=354;; (*ITAG) Solyc06g066770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38339332-38340435 transcript_region:SL2.40ch06:38339332..38340435- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDI0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00030296g0004.1 protein AED:0.25 eAED:0.27 QI:0|0.66|0.57|1|0.5|0.71|7|560|475; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=0.0) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc02g094390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49503878-49507004 transcript_region:SL2.40ch02:49503878..49507004+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00048026g0010.1 protein AED:0.19 eAED:0.19 QI:677|0.81|0.75|1|0.27|0.08|12|783|244; (*TAIR) AT1G73680.2 (e_value=1e-110) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=640;; (*ITAG) Solyc03g119060.2.1 (e_value=7e-147) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00021230g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|98; (*SWP) sp|Q07262|1A1C_TOBAC (e_value=1e-51) 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=3e-38) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc01g095080.2.1 (e_value=4e-48) genomic_reference:SL2.40ch01 gene_region:78214067-78216996 transcript_region:SL2.40ch01:78214067..78216996- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00018932g0007.1 protein AED:0.20 eAED:0.43 QI:0|0|0|0.66|0|0|3|0|115; (*TAIR) AT3G05940.1 (e_value=2e-24) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00054060g0002.1 protein AED:0.30 eAED:0.43 QI:20|0|0|0.66|0.5|0.33|3|0|93 NbS00000657g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|168; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=1e-18) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT3G18570.1 (e_value=2e-38) | Symbols: | Oleosin family protein | chr3:6396072-6396572 REVERSE LENGTH=166;; (*ITAG) Solyc03g119820.1.1 (e_value=2e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62444432-62444929 transcript_region:SL2.40ch03:62444432..62444929- go_terms:GO:0016021 functional_description:"Oleosin Bn-V (AHRD V1 ***- B6UIA7_MAIZE); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00000657g0006.1 protein AED:0.28 eAED:0.28 QI:313|1|1|1|0.66|0.75|4|182|202; (*TAIR) AT1G48960.1 (e_value=3e-66) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:18112552-18113550 FORWARD LENGTH=219;; (*ITAG) Solyc03g119840.2.1 (e_value=2e-106) genomic_reference:SL2.40ch03 gene_region:62451425-62454082 transcript_region:SL2.40ch03:62451425..62454082- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KDY5_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00011755g0015.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.84|0.85|14|232|525; (*SWP) sp|Q94C70|NAT2_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2;; (*TAIR) AT2G34190.1 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr2:14437065-14439407 FORWARD LENGTH=524;; (*ITAG) Solyc02g072500.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36260474-36264848 transcript_region:SL2.40ch02:36260474..36264848- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I1J7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00011755g0016.1 protein AED:0.10 eAED:0.10 QI:42|1|0.8|1|0.88|0.9|10|0|659; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-50) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G29200.2 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:10208002-10210488 FORWARD LENGTH=611;; (*ITAG) Solyc02g072490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36256850-36260407 transcript_region:SL2.40ch02:36256850..36260407+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 *--- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00011755g0018.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|1|1|2|137|133; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=2e-33) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=2e-34) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g072480.2.1 (e_value=2e-66) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00011755g0019.1 protein AED:0.39 eAED:0.39 QI:0|1|0.5|1|1|1|2|137|133; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=2e-33) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=2e-34) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g072480.2.1 (e_value=2e-66) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00011755g0007.1 protein AED:0.64 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|214; (*ITAG) Solyc02g072480.2.1 (e_value=7e-36) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00015264g0001.1 protein AED:0.26 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|438; (*SWP) sp|Q1PFQ9|PPR62_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2;; (*TAIR) AT1G28690.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:10080042-10081604 REVERSE LENGTH=520;; (*ITAG) Solyc11g010260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3323400-3327178 transcript_region:SL2.40ch11:3323400..3327178+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCY7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057543g0006.1 protein AED:0.12 eAED:0.12 QI:109|1|1|1|1|1|4|351|220; (*SWP) sp|P34092|MYOB_DICDI (e_value=7e-16) Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2;; (*TAIR) AT5G53310.1 (e_value=6e-90) | Symbols: | myosin heavy chain-related | chr5:21634657-21636094 FORWARD LENGTH=210;; (*ITAG) Solyc03g007480.2.1 (e_value=1e-137) genomic_reference:SL2.40ch03 gene_region:2052867-2055919 transcript_region:SL2.40ch03:2052867..2055919+ go_terms:GO:0016459 functional_description:"Myosin (AHRD V1 ***- D2UY43_NAEGR); contains Interpro domain(s) IPR010926 Myosin tail 2 "; GO:0016459 NbS00057543g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|676; (*SWP) sp|Q9FL63|Y5410_ARATH (e_value=1e-145) Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At5g24100 OS=Arabidopsis thaliana GN=At5g24100 PE=2 SV=1;; (*TAIR) AT5G24100.1 (e_value=7e-147) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:8149216-8151191 FORWARD LENGTH=614;; (*ITAG) Solyc00g110870.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:16134484-16136848 transcript_region:SL2.40ch00:16134484..16136848- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00008058g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|0.66|0.5|0.66|3|0|138; (*SWP) sp|Q8L7A4|AGD11_ARATH (e_value=2e-21) Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1;; (*TAIR) AT3G17980.1 (e_value=9e-71) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177;; (*ITAG) Solyc06g068940.2.1 (e_value=5e-81) genomic_reference:SL2.40ch06 gene_region:39155066-39156576 transcript_region:SL2.40ch06:39155066..39156576+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7L7Y3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00015509g0013.1 protein AED:0.18 eAED:0.18 QI:0|1|0.71|1|0.33|0.42|7|389|145; (*SWP) sp|O64644|SAP18_ARATH (e_value=8e-49) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=6e-50) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=5e-69) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ go_terms:GO:0003714 functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "; GO:0003714 NbS00015509g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.16|1|1|0.83|6|0|573; (*SWP) sp|Q9LE59|GAUT1_ARATH (e_value=0.0) Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1;; (*TAIR) AT3G61130.1 (e_value=0.0) | Symbols: GAUT1, LGT1 | galacturonosyltransferase 1 | chr3:22622399-22625514 FORWARD LENGTH=673;; (*ITAG) Solyc01g093970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77312543-77315441 transcript_region:SL2.40ch01:77312543..77315441+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9IC41_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00015509g0012.1 protein AED:0.56 eAED:0.64 QI:48|0|0|1|0|0|2|0|50 NbS00007564g0004.1 protein AED:0.43 eAED:0.59 QI:355|0|0.2|0.6|1|1|5|0|91 NbS00007564g0010.1 protein AED:0.27 eAED:0.31 QI:0|0.8|0.5|1|0.4|0.83|6|0|519; (*SWP) sp|Q8S9K3|VAR3_ARATH (e_value=1e-31) Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2;; (*TAIR) AT1G70650.1 (e_value=3e-128) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr1:26638158-26640126 FORWARD LENGTH=466;; (*ITAG) Solyc08g014510.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4545315-4548052 transcript_region:SL2.40ch08:4545315..4548052- go_terms:GO:0005488 functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 **** D7KYC9_ARALY); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00027208g0004.1 protein AED:0.25 eAED:0.25 QI:225|0.66|0.75|1|0.66|0.5|4|191|545; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=5e-19) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT5G48385.1 (e_value=0.0) | Symbols: | FRIGIDA-like protein | chr5:19609471-19611712 FORWARD LENGTH=558;; (*ITAG) Solyc06g082930.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44846738-44850138 transcript_region:SL2.40ch06:44846738..44850138+ functional_description:"FRIGIDA (Fragment) (AHRD V1 *-*- Q58T23_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00039294g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|489; (*TAIR) AT5G64430.1 (e_value=3e-96) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:25762540-25764081 REVERSE LENGTH=513;; (*ITAG) Solyc01g106320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86005942-86007808 transcript_region:SL2.40ch01:86005942..86007808- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7MPG4_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00058237g0001.1 protein AED:0.28 eAED:0.50 QI:0|0|0|1|0|0|2|0|88; (*ITAG) Solyc04g050030.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00036696g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|312; (*SWP) sp|Q9SSE8|GLYT1_ARATH (e_value=4e-27) Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1;; (*TAIR) AT4G38040.1 (e_value=2e-42) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc11g011190.1.1 (e_value=7e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4252106-4253152 transcript_region:SL2.40ch11:4252106..4253152- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 **-- D7M9K9_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00001605g0003.1 protein AED:0.14 eAED:0.14 QI:377|1|1|1|0.75|0.77|9|131|391; (*SWP) sp|O42916|ALE1_SCHPO (e_value=2e-38) Lysophospholipid acyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ale1 PE=1 SV=1;; (*TAIR) AT1G12640.1 (e_value=0.0) | Symbols: | MBOAT (membrane bound O-acyl transferase) family protein | chr1:4303586-4305666 REVERSE LENGTH=462;; (*ITAG) Solyc08g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60819451-60824722 transcript_region:SL2.40ch08:60819451..60824722- go_terms:GO:0008415 functional_description:"Lysophospholipid acyltransferase (AHRD V1 **** B6K7S6_SCHJY); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; GO:0008415 NbS00015664g0010.1 protein AED:0.40 eAED:0.41 QI:0|1|0.57|1|0.83|0.71|7|0|204; (*TAIR) AT1G12790.1 (e_value=5e-83) | Symbols: | CONTAINS InterPro DOMAIN/s: RuvA domain 2-like (InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4359597-4361222 REVERSE LENGTH=250;; (*ITAG) Solyc06g064560.2.1 (e_value=2e-115) genomic_reference:SL2.40ch06 gene_region:36619949-36622784 transcript_region:SL2.40ch06:36619949..36622784- functional_description:"DNA ligase-like protein (AHRD V1 ***- Q8L9H8_ARATH); contains Interpro domain(s) IPR010994 RuvA domain 2-like "; NbS00015664g0008.1 protein AED:0.01 eAED:0.01 QI:253|1|1|1|0.83|1|7|366|338; (*SWP) sp|Q55909|Y305_SYNY3 (e_value=5e-20) TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1;; (*TAIR) AT1G22850.1 (e_value=3e-96) | Symbols: | SNARE associated Golgi protein family | chr1:8080671-8082816 REVERSE LENGTH=344;; (*ITAG) Solyc06g064570.2.1 (e_value=7e-167) genomic_reference:SL2.40ch06 gene_region:36624383-36628900 transcript_region:SL2.40ch06:36624383..36628900+ functional_description:"SNARE associated Golgi protein (AHRD V1 *--- B9XJU7_9BACT); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00015664g0012.1 protein AED:0.22 eAED:0.22 QI:83|0.83|0.78|1|0.83|0.78|19|166|873; (*SWP) sp|O81852|AKH2_ARATH (e_value=0.0) Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1;; (*TAIR) AT4G19710.2 (e_value=0.0) | Symbols: AK-HSDH II, AK-HSDH | aspartate kinase-homoserine dehydrogenase ii | chr4:10725229-10729536 FORWARD LENGTH=916;; (*ITAG) Solyc06g064550.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36609568-36619733 transcript_region:SL2.40ch06:36609568..36619733+ go_terms:GO:0004072,GO:0004412 functional_description:"Aspartokinase-homoserine dehydrogenase (AHRD V1 **** O63067_SOYBN); contains Interpro domain(s) IPR001341 Aspartate kinase region "; GO:0004072,GO:0004412 NbS00027730g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|129; (*ITAG) Solyc02g032980.1.1 (e_value=2e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:20287493-20287870 transcript_region:SL2.40ch02:20287493..20287870- functional_description:"Unknown Protein (AHRD V1)"; NbS00027730g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|288; (*SWP) sp|Q9SVC5|DOF35_ARATH (e_value=2e-34) Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1;; (*TAIR) AT3G52440.1 (e_value=2e-35) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr3:19435447-19436190 FORWARD LENGTH=247;; (*ITAG) Solyc04g070960.1.1 (e_value=3e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55346932-55347735 transcript_region:SL2.40ch04:55346932..55347735- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 9 (AHRD V1 *-*- A5HWF8_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00010265g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|377; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=1e-78) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G42440.1 (e_value=3e-125) | Symbols: | Protein kinase superfamily protein | chr5:16973434-16974513 REVERSE LENGTH=359;; (*ITAG) Solyc04g071870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56476110-56477255 transcript_region:SL2.40ch04:56476110..56477255+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding/protein serine/threonine kinase (AHRD V1 **** C6FF68_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00010265g0007.1 protein AED:0.26 eAED:0.26 QI:469|0.92|0.86|1|0.92|0.86|15|0|770; (*SWP) sp|Q9FWR2|AVPX_ARATH (e_value=0.0) Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=2 SV=1;; (*TAIR) AT1G16780.1 (e_value=0.0) | Symbols: VHP2;2, AtVHP2;2 | Inorganic H pyrophosphatase family protein | chr1:5739468-5743818 REVERSE LENGTH=851;; (*ITAG) Solyc04g071880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56486843-56496673 transcript_region:SL2.40ch04:56486843..56496673+ go_terms:GO:0009678 functional_description:"V-type H(+)-translocating pyrophosphatase (AHRD V1 **** B2V595_CLOBA); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00010265g0113.1 protein AED:0.02 eAED:0.02 QI:102|1|1|1|1|1|3|225|358 NbS00010265g0115.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.75|1|1|1|4|0|365 NbS00010265g0116.1 protein AED:0.15 eAED:0.16 QI:104|0.33|0.5|0.75|0.66|0.75|4|0|352 NbS00010265g0114.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|0.66|0.5|0.66|3|0|207 NbS00024545g0016.1 protein AED:0.21 eAED:0.21 QI:298|0.72|0.78|1|0.83|0.78|19|235|1319; (*SWP) sp|Q559T8|Y0701_DICDI (e_value=4e-81) Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1;; (*TAIR) AT3G17850.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:6109854-6116245 REVERSE LENGTH=1296;; (*ITAG) Solyc03g118530.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61454465-61471971 transcript_region:SL2.40ch03:61454465..61471971- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00024545g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|128; (*TAIR) AT1G80630.1 (e_value=2e-14) | Symbols: | RNI-like superfamily protein | chr1:30308879-30310615 REVERSE LENGTH=578;; (*ITAG) Solyc03g117200.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:60457109-60459160 transcript_region:SL2.40ch03:60457109..60459160+ functional_description:"F-box family protein (AHRD V1 ***- B9GNT5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00024545g0001.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|184; (*ITAG) Solyc11g071500.1.1 (e_value=5e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00024545g0019.1 protein AED:0.45 eAED:0.48 QI:0|0|0|1|0|0.5|2|0|143; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=3e-15) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08520.1 (e_value=4e-27) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298;; (*ITAG) Solyc11g071500.1.1 (e_value=4e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00024545g0020.1 protein AED:0.43 eAED:0.59 QI:191|0|0.25|1|0|0|4|0|148; (*TAIR) AT5G05790.1 (e_value=3e-14) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1740724-1741671 REVERSE LENGTH=277;; (*ITAG) Solyc11g071500.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00024545g0024.1 protein AED:0.17 eAED:0.19 QI:0|0.90|0.83|1|0.63|0.66|12|116|556; (*SWP) sp|Q7VEJ6|DNAJ_PROMA (e_value=3e-85) Chaperone protein DnaJ OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=dnaJ PE=3 SV=1;; (*TAIR) AT3G17830.1 (e_value=2e-134) | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr3:6101868-6104503 FORWARD LENGTH=517;; (*ITAG) Solyc03g118500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61395124-61401321 transcript_region:SL2.40ch03:61395124..61401321+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00024545g0023.1 protein AED:0.21 eAED:0.22 QI:0|0.5|0.33|1|0.5|0.66|3|0|668; (*SWP) sp|Q9LP77|Y1848_ARATH (e_value=0.0) Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1;; (*TAIR) AT1G48480.1 (e_value=0.0) | Symbols: RKL1 | receptor-like kinase 1 | chr1:17918475-17920743 FORWARD LENGTH=655;; (*ITAG) Solyc03g118510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61406457-61409311 transcript_region:SL2.40ch03:61406457..61409311+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00024545g0006.1 protein AED:0.45 eAED:0.48 QI:0|0|0|1|1|1|2|0|121; (*ITAG) Solyc11g071500.1.1 (e_value=4e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00002526g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|189; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-47) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=2e-53) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc08g007450.1.1 (e_value=2e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2025883-2026491 transcript_region:SL2.40ch08:2025883..2026491- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00002526g0005.1 protein AED:0.10 eAED:0.10 QI:251|0.87|0.88|1|0.87|0.77|9|149|233; (*TAIR) AT1G62780.1 (e_value=1e-92) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249349-23251066 REVERSE LENGTH=237;; (*ITAG) Solyc08g079240.2.1 (e_value=1e-136) genomic_reference:SL2.40ch08 gene_region:60020025-60025240 transcript_region:SL2.40ch08:60020025..60025240- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01GV2_OSTTA)"; NbS00004016g0004.1 protein AED:0.16 eAED:0.16 QI:224|1|1|1|0.90|0.83|12|473|471; (*SWP) sp|Q9ZNW0|MOCS3_ARATH (e_value=0.0) Adenylyltransferase and sulfurtransferase MOCS3 OS=Arabidopsis thaliana GN=MOCS3 PE=2 SV=1;; (*TAIR) AT5G55130.1 (e_value=0.0) | Symbols: CNX5, SIR1 | co-factor for nitrate, reductase and xanthine dehydrogenase 5 | chr5:22373374-22376028 REVERSE LENGTH=464;; (*ITAG) Solyc07g064850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64061522-64065149 transcript_region:SL2.40ch07:64061522..64065149- go_terms:GO:0004792 functional_description:"UBA/THIF-type NAD/FAD binding protein (AHRD V1 **-- Q02B12_SOLUE); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0004792 NbS00011285g0001.1 protein AED:0.21 eAED:0.21 QI:0|0.72|0.83|0.91|1|1|12|146|679; (*SWP) sp|Q9Y2V7|COG6_HUMAN (e_value=6e-103) Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=2 SV=2;; (*TAIR) AT1G31780.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Conserved oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast hits to 379 proteins in 190 species: Archae - 0; Bacteria - 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | chr1:11391341-11394610 FORWARD LENGTH=680;; (*ITAG) Solyc08g075440.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56755018-56761863 transcript_region:SL2.40ch08:56755018..56761863+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 6 (AHRD V1 ***- COG6_BOVIN); contains Interpro domain(s) IPR010490 Conserved oligomeric complex COG6 "; GO:0005515 NbS00011285g0009.1 protein AED:0.61 eAED:0.84 QI:0|0|0|0.75|0.33|0.25|4|0|95; (*TAIR) AT5G45370.1 (e_value=2e-27) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:18388411-18390282 FORWARD LENGTH=357;; (*ITAG) Solyc08g075460.2.1 (e_value=3e-42) genomic_reference:SL2.40ch08 gene_region:56777331-56783563 transcript_region:SL2.40ch08:56777331..56783563+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00008157g0015.1 protein AED:0.32 eAED:0.33 QI:266|0.66|0.6|0.8|0.77|0.8|10|0|316; (*SWP) sp|P48496|TPIC_SPIOL (e_value=5e-149) Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1;; (*TAIR) AT2G21170.1 (e_value=2e-138) | Symbols: TIM, PDTPI | triosephosphate isomerase | chr2:9071047-9073106 REVERSE LENGTH=315;; (*ITAG) Solyc01g111120.2.1 (e_value=4e-176) genomic_reference:SL2.40ch01 gene_region:89253979-89260194 transcript_region:SL2.40ch01:89253979..89260194- go_terms:GO:0005515,GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** D6N3G7_GOSHI); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0005515,GO:0004807 NbS00008157g0012.1 protein AED:0.06 eAED:0.06 QI:60|1|1|1|1|1|8|545|259; (*SWP) sp|P45434|SSRA_ARATH (e_value=4e-73) Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3;; (*TAIR) AT2G16595.1 (e_value=1e-77) | Symbols: | Translocon-associated protein (TRAP), alpha subunit | chr2:7198363-7200086 FORWARD LENGTH=251;; (*ITAG) Solyc10g054880.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51516079-51520265 transcript_region:SL2.40ch10:51516079..51520265+ go_terms:GO:0005048 functional_description:"Translocon-associated protein alpha subunit (AHRD V1 ***- B6SRQ1_MAIZE); contains Interpro domain(s) IPR005595 Translocon-associated protein (TRAP), alpha subunit "; GO:0005048 NbS00008157g0013.1 protein AED:0.06 eAED:0.08 QI:0|0.66|0.46|1|0.58|0.38|13|1259|2136; (*TAIR) AT4G30150.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:14742452-14749764 FORWARD LENGTH=2009;; (*ITAG) Solyc10g054860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51490280-51501248 transcript_region:SL2.40ch10:51490280..51501248+ functional_description:"Chromosome 13 contig 1 DNA sequence (AHRD V1 *-*- Q00WQ5_OSTTA); contains Interpro domain(s) IPR018849 Nucleolar 27S pre-rRNA processing, Urb2/Npa2 "; NbS00008157g0014.1 protein AED:0.33 eAED:0.45 QI:0|0|0|1|0|0|3|0|105; (*SWP) sp|P29757|CYB_SOLTU (e_value=2e-21) Cytochrome b OS=Solanum tuberosum GN=MT-CYB PE=1 SV=4;; (*ITAG) ATMG00220.1 (e_value=2e-22) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00044980g0001.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|1|1|2|0|127 NbS00017916g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|462; (*SWP) sp|Q8GXS8|PKS3_ARATH (e_value=9e-34) Protein PHYTOCHROME KINASE SUBSTRATE 3 OS=Arabidopsis thaliana GN=PKS3 PE=2 SV=2;; (*TAIR) AT1G18810.1 (e_value=7e-35) | Symbols: | phytochrome kinase substrate-related | chr1:6485709-6486872 REVERSE LENGTH=387;; (*ITAG) Solyc06g069880.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:39897823-39899235 transcript_region:SL2.40ch06:39897823..39899235+ functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; NbS00017916g0017.1 protein AED:0.03 eAED:0.03 QI:84|1|0.83|1|1|1|6|143|617; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc06g069870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39892312-39896352 transcript_region:SL2.40ch06:39892312..39896352+ functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00017916g0018.1 protein AED:0.27 eAED:0.27 QI:192|0.81|0.83|1|0.72|0.83|12|186|566; (*SWP) sp|Q01105|SET_HUMAN (e_value=2e-48) Protein SET OS=Homo sapiens GN=SET PE=1 SV=3;; (*TAIR) AT1G18800.1 (e_value=1e-100) | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481466-6483463 REVERSE LENGTH=256;; (*ITAG) Solyc06g069900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00017916g0020.1 protein AED:0.34 eAED:0.37 QI:143|0.5|0.8|1|0.25|0.4|5|265|96; (*SWP) sp|P41098|RL34_TOBAC (e_value=7e-41) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G69620.1 (e_value=9e-40) | Symbols: RPL34 | ribosomal protein L34 | chr1:26189900-26191081 FORWARD LENGTH=119;; (*ITAG) Solyc05g007560.2.1 (e_value=6e-41) genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00017916g0019.1 protein AED:0.01 eAED:0.01 QI:267|1|1|1|1|1|3|406|358; (*SWP) sp|P81392|MYB06_ANTMA (e_value=8e-118) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT5G62470.2 (e_value=2e-100) | Symbols: MYB96 | myb domain protein 96 | chr5:25079434-25080858 REVERSE LENGTH=352;; (*ITAG) Solyc03g116100.2.1 (e_value=5e-136) genomic_reference:SL2.40ch03 gene_region:59662688-59664351 transcript_region:SL2.40ch03:59662688..59664351- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q6R036_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00002401g0010.1 protein AED:0.07 eAED:0.07 QI:31|0.75|0.77|1|0.62|0.55|9|552|253; (*TAIR) AT2G39080.1 (e_value=2e-81) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:16309981-16312475 REVERSE LENGTH=351;; (*ITAG) Solyc06g054530.2.1 (e_value=2e-118) genomic_reference:SL2.40ch06 gene_region:33772770-33775313 transcript_region:SL2.40ch06:33772770..33775313+ functional_description:"MRNA complete cds clone RAFL24-13-K22 (AHRD V1 ***- Q67YQ9_ARATH)"; NbS00002401g0015.1 protein AED:0.14 eAED:0.14 QI:244|0.81|0.82|1|0.77|0.78|28|441|989; (*SWP) sp|Q8RWY3|ISW2_ARATH (e_value=0.0) Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3;; (*TAIR) AT3G06400.1 (e_value=0.0) | Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1055;; (*ITAG) Solyc06g054560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33791637-33800988 transcript_region:SL2.40ch06:33791637..33800988+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00002401g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.71|1|0.83|0.85|7|0|474; (*SWP) sp|Q84W91|C3H32_ARATH (e_value=7e-138) Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2;; (*TAIR) AT2G47850.3 (e_value=5e-139) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=468;; (*ITAG) Solyc01g067550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68690543-68697003 transcript_region:SL2.40ch01:68690543..68697003- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 58 (AHRD V1 ***- C3H58_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00034356g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.6|0.33|1|0.8|0.5|6|0|447; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=1e-94) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=7e-96) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc06g074110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42198693-42205529 transcript_region:SL2.40ch06:42198693..42205529- go_terms:GO:0016563,GO:0042803 functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *--- Y1462_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0016563,GO:0042803 NbS00034356g0003.1 protein AED:0.42 eAED:0.43 QI:0|0.66|0.57|0.85|1|1|7|0|369; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=1e-31) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=7e-33) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc06g074110.2.1 (e_value=2e-103) genomic_reference:SL2.40ch06 gene_region:42198693-42205529 transcript_region:SL2.40ch06:42198693..42205529- go_terms:GO:0016563,GO:0042803 functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *--- Y1462_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0016563,GO:0042803 NbS00034356g0009.1 protein AED:0.31 eAED:0.32 QI:0|0.57|0.5|0.87|0.57|0.75|8|0|233; (*SWP) sp|Q9LDU6|ST7R_ARATH (e_value=2e-73) 7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1;; (*TAIR) AT1G50430.1 (e_value=1e-74) | Symbols: DWF5, PA, LE, ST7R, 7RED | Ergosterol biosynthesis ERG4/ERG24 family | chr1:18682175-18685555 REVERSE LENGTH=432;; (*ITAG) Solyc06g074090.2.1 (e_value=1e-91) genomic_reference:SL2.40ch06 gene_region:42185371-42191298 transcript_region:SL2.40ch06:42185371..42191298+ go_terms:GO:0047598,GO:0009918 functional_description:"Sterol reductase (AHRD V1 **** A8IA67_CHLRE); contains Interpro domain(s) IPR001171 Ergosterol biosynthesis ERG4/ERG24 "; GO:0047598,GO:0009918 NbS00034356g0008.1 protein AED:0.36 eAED:0.36 QI:49|0.6|0.66|1|0.4|0.33|6|417|96; (*TAIR) AT2G36580.1 (e_value=4e-34) | Symbols: | Pyruvate kinase family protein | chr2:15339253-15342781 FORWARD LENGTH=527;; (*ITAG) Solyc09g008840.2.1 (e_value=1e-39) genomic_reference:SL2.40ch09 gene_region:2258920-2266051 transcript_region:SL2.40ch09:2258920..2266051- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A9P7U5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00025459g0005.1 protein AED:0.08 eAED:0.08 QI:59|0.6|0.66|1|0.4|0.33|6|187|447; (*SWP) sp|P54772|DCHS_SOLLC (e_value=1e-172) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=4e-152) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g006750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1322952-1326746 transcript_region:SL2.40ch08:1322952..1326746+ go_terms:GO:0030170,GO:0019752 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0030170,GO:0019752 NbS00003014g0010.1 protein AED:0.00 eAED:0.00 QI:132|1|1|1|1|1|2|466|203; (*SWP) sp|Q9SB67|NRT32_ARATH (e_value=3e-51) High-affinity nitrate transporter 3.2 OS=Arabidopsis thaliana GN=NRT3.2 PE=2 SV=1;; (*TAIR) AT4G24730.4 (e_value=5e-52) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12749879-12750872 REVERSE LENGTH=231;; (*ITAG) Solyc03g112100.2.1 (e_value=1e-65) genomic_reference:SL2.40ch03 gene_region:56672702-56674150 transcript_region:SL2.40ch03:56672702..56674150- go_terms:GO:0015112 functional_description:"Component of high affinity nitrate transporter (AHRD V1 **-* D2KTV0_LOTJA); contains Interpro domain(s) IPR016605 Transporter, high affinity nitrate, Nar2 "; GO:0015112 NbS00003014g0006.1 protein AED:0.59 eAED:0.92 QI:0|0|0|0.8|1|1|5|0|253 NbS00003014g0011.1 protein AED:0.23 eAED:0.23 QI:0|0|0.5|1|0|0.5|2|100|325; (*SWP) sp|Q8H5F8|ADPRM_ORYSJ (e_value=2e-167) Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica GN=Os07g0688000 PE=2 SV=1;; (*TAIR) AT4G24730.3 (e_value=5e-160) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12752696-12753631 REVERSE LENGTH=311;; (*ITAG) Solyc03g112080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56665004-56665963 transcript_region:SL2.40ch03:56665004..56665963+ go_terms:GO:0004722 functional_description:"Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (AHRD V1 **-- ADPRM_BOVIN); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00003014g0012.1 protein AED:0.26 eAED:0.30 QI:36|0.71|0.37|1|0.57|0.5|8|0|728; (*SWP) sp|Q3YT89|NADA_EHRCJ (e_value=5e-17) Quinolinate synthase A OS=Ehrlichia canis (strain Jake) GN=nadA PE=3 SV=1;; (*TAIR) AT5G50210.1 (e_value=0.0) | Symbols: QS, OLD5, SUFE3 | quinolinate synthase | chr5:20442803-20445706 FORWARD LENGTH=718;; (*ITAG) Solyc03g112060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56648472-56655136 transcript_region:SL2.40ch03:56648472..56655136+ go_terms:GO:0051539,GO:0008047,GO:0042803 functional_description:"Quinolinate synthase A (AHRD V1 *-*- NADA_CYAP4); contains Interpro domain(s) IPR003808 Fe-S metabolism associated SufE "; GO:0051539,GO:0008047,GO:0042803 NbS00046948g0004.1 protein AED:0.26 eAED:0.29 QI:304|0.66|0.6|1|0.44|0.5|10|0|334; (*SWP) sp|Q39237|TGA1_ARATH (e_value=3e-107) Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2;; (*TAIR) AT5G65210.5 (e_value=2e-108) | Symbols: TGA1 | bZIP transcription factor family protein | chr5:26059031-26060749 FORWARD LENGTH=368;; (*ITAG) Solyc04g072460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57075743-57078562 transcript_region:SL2.40ch04:57075743..57078562+ go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** A7Y1S1_BRAJU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00012055g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0.66|1|1|1|3|672|300; (*ITAG) Solyc08g067880.2.1 (e_value=4e-46) genomic_reference:SL2.40ch08 gene_region:54139828-54142777 transcript_region:SL2.40ch08:54139828..54142777- functional_description:"M355 (AHRD V1 *-*- Q7XA59_LILLO)"; NbS00012055g0116.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.5|0.75|1|0.75|4|0|588 NbS00012055g0101.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|5|448|341 NbS00012055g0119.1 protein AED:0.11 eAED:0.26 QI:0|0|0|1|0|0|3|0|148 NbS00009753g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|136; (*ITAG) Solyc08g048080.1.1 (e_value=9e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37782633-37782920 transcript_region:SL2.40ch08:37782633..37782920- functional_description:"Unknown Protein (AHRD V1)"; NbS00009753g0001.1 protein AED:0.26 eAED:0.26 QI:309|1|0.5|1|0|0|2|0|235; (*SWP) sp|Q9FMU5|UTP18_ARATH (e_value=7e-69) U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1;; (*TAIR) AT5G14050.1 (e_value=5e-70) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4533539-4535179 FORWARD LENGTH=546;; (*ITAG) Solyc10g080180.1.1 (e_value=8e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60867892-60869391 transcript_region:SL2.40ch10:60867892..60869391- go_terms:GO:0005515,GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein 18 (AHRD V1 **-- D0MWK6_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00009753g0027.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|167; (*SWP) sp|Q9FMU5|UTP18_ARATH (e_value=4e-65) U3 small nucleolar RNA-associated protein 18 homolog OS=Arabidopsis thaliana GN=At5g14050 PE=1 SV=1;; (*TAIR) AT5G14050.1 (e_value=3e-66) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4533539-4535179 FORWARD LENGTH=546;; (*ITAG) Solyc10g080180.1.1 (e_value=3e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60867892-60869391 transcript_region:SL2.40ch10:60867892..60869391- go_terms:GO:0005515,GO:0000166 functional_description:"U3 small nucleolar RNA-associated protein 18 (AHRD V1 **-- D0MWK6_PHYIN); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00009753g0028.1 protein AED:0.49 eAED:0.76 QI:0|0|0|0.66|0.5|0.66|3|0|93 NbS00009753g0011.1 protein AED:0.58 eAED:0.93 QI:0|0|0|0.6|1|1|5|0|194; (*SWP) sp|Q9LFN8|GLR26_ARATH (e_value=2e-25) Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2;; (*TAIR) AT5G11180.1 (e_value=1e-26) | Symbols: ATGLR2.6, GLR2.6 | glutamate receptor 2.6 | chr5:3557261-3561575 REVERSE LENGTH=906;; (*ITAG) Solyc08g006500.2.1 (e_value=4e-39) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00009753g0030.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.4|0.75|0.6|5|0|413; (*SWP) sp|Q8LGN0|GLR27_ARATH (e_value=4e-77) Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3;; (*TAIR) AT2G29120.1 (e_value=3e-78) | Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952;; (*ITAG) Solyc08g006500.2.1 (e_value=6e-128) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00009753g0031.1 protein AED:0.23 eAED:0.26 QI:0|0|0|1|0.33|0|4|0|292; (*SWP) sp|Q04614|NU4LM_ARATH (e_value=4e-25) NADH-ubiquinone oxidoreductase chain 4L OS=Arabidopsis thaliana GN=ND4L PE=2 SV=2;; (*ITAG) ATMG00650.1 (e_value=6e-31) | Symbols: NAD4L | NADH dehydrogenase subunit 4L | chrM:188929-189231 REVERSE LENGTH=100; NbS00009753g0026.1 protein AED:0.51 eAED:0.72 QI:0|0.5|0|1|0.5|0.33|3|0|121; (*TAIR) AT5G10730.1 (e_value=4e-15) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3390822-3392947 REVERSE LENGTH=287;; (*ITAG) Solyc08g006510.2.1 (e_value=9e-18) genomic_reference:SL2.40ch08 gene_region:1108336-1124190 transcript_region:SL2.40ch08:1108336..1124190- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B6TVJ7_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00009753g0032.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|162; (*SWP) sp|P09003|MI25_TOBAC (e_value=1e-83) ATP synthase protein MI25 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) ATMG00640.1 (e_value=1e-74) | Symbols: ORF25 | hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 REVERSE LENGTH=192;; (*ITAG) Solyc06g042990.1.1 (e_value=5e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:25424621-25424827 transcript_region:SL2.40ch06:25424621..25424827+ functional_description:"ATPase subunit 4 (Fragment) (AHRD V1 ***- Q5MFF4_AMBTC)"; NbS00014249g0003.1 protein AED:0.09 eAED:0.09 QI:112|1|1|1|1|1|4|102|321; (*SWP) sp|Q02200|PERX_NICSY (e_value=0.0) Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1;; (*TAIR) AT1G14550.1 (e_value=5e-144) | Symbols: | Peroxidase superfamily protein | chr1:4979028-4980324 FORWARD LENGTH=321;; (*ITAG) Solyc11g018800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9597159-9598442 transcript_region:SL2.40ch11:9597159..9598442- go_terms:GO:0055114 functional_description:"Peroxidase 2 (AHRD V1 ***- Q9SSZ8_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00015228g0007.1 protein AED:0.01 eAED:0.02 QI:0|0.33|0|1|1|1|4|0|976; (*TAIR) AT1G32120.1 (e_value=1e-23) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc09g009160.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2493689-2496994 transcript_region:SL2.40ch09:2493689..2496994+ functional_description:"Aminotransferase-like (AHRD V1 *-*- Q5JJS3_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00015228g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|498; (*SWP) sp|Q9LZR8|Y5370_ARATH (e_value=1e-159) PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana GN=At5g03700 PE=1 SV=1;; (*TAIR) AT5G03700.1 (e_value=1e-160) | Symbols: | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain | chr5:965874-967322 REVERSE LENGTH=482;; (*ITAG) Solyc09g009150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2488251-2489759 transcript_region:SL2.40ch09:2488251..2489759+ go_terms:GO:0005529 functional_description:"D-mannose binding lectin family protein expressed (AHRD V1 *--- Q10JE9_ORYSJ); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00037421g0005.1 protein AED:0.04 eAED:0.05 QI:0|1|0.4|1|1|1|5|0|688; (*SWP) sp|O04130|SERA_ARATH (e_value=0.0) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT1G17745.1 (e_value=0.0) | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase | chr1:6101157-6104979 FORWARD LENGTH=624;; (*ITAG) Solyc03g123830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64593806-64596894 transcript_region:SL2.40ch03:64593806..64596894+ go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00013163g0010.1 protein AED:0.23 eAED:0.23 QI:207|1|1|1|0.77|0.8|10|463|580; (*SWP) sp|Q9FLP0|MA651_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 1 OS=Arabidopsis thaliana GN=MAP65-1 PE=1 SV=1;; (*TAIR) AT5G55230.1 (e_value=0.0) | Symbols: ATMAP65-1, MAP65-1 | microtubule-associated proteins 65-1 | chr5:22402716-22405182 FORWARD LENGTH=587;; (*ITAG) Solyc07g064970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64141117-64144666 transcript_region:SL2.40ch07:64141117..64144666+ go_terms:GO:0008017,GO:0046983 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017,GO:0046983 NbS00013163g0009.1 protein AED:0.31 eAED:0.35 QI:15|0.8|0.5|1|0.6|0.66|6|0|454; (*SWP) sp|Q55B11|VTA1_DICDI (e_value=2e-30) Vacuolar protein sorting-associated protein VTA1 homolog OS=Dictyostelium discoideum GN=vta1 PE=3 SV=1;; (*TAIR) AT4G26750.1 (e_value=1e-92) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:13475848-13478382 REVERSE LENGTH=421;; (*ITAG) Solyc07g064980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64146302-64151201 transcript_region:SL2.40ch07:64146302..64151201+ go_terms:GO:0005515 functional_description:"Vacuolar protein sorting-associated protein VTA1 homolog (AHRD V1 *--- C1C2K6_9MAXI); contains Interpro domain(s) IPR006745 Protein of unknown function DUF605 "; GO:0005515 NbS00009993g0003.1 protein AED:0.27 eAED:0.28 QI:226|0.71|0.87|1|0.28|0.37|8|0|449; (*TAIR) AT2G12400.1 (e_value=3e-69) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541;; (*ITAG) Solyc03g117280.2.1 (e_value=3e-124) genomic_reference:SL2.40ch03 gene_region:60511944-60516391 transcript_region:SL2.40ch03:60511944..60516391+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043712g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|397 NbS00031996g0007.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|0|0|2|0|199; (*SWP) sp|Q9SEU6|TRXM4_ARATH (e_value=7e-54) Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2;; (*TAIR) AT3G15360.1 (e_value=6e-55) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc12g013810.1.1 (e_value=9e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4597746-4599971 transcript_region:SL2.40ch12:4597746..4599971- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00051074g0004.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|1|1|2|0|628; (*TAIR) AT2G01190.1 (e_value=6e-69) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc03g118870.2.1 (e_value=2e-163) genomic_reference:SL2.40ch03 gene_region:61707579-61709994 transcript_region:SL2.40ch03:61707579..61709994- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00004889g0007.1 protein AED:0.26 eAED:0.26 QI:406|0.92|1|1|0.92|0.92|14|704|527; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=0.0) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc12g026430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:16710135-16716399 transcript_region:SL2.40ch12:16710135..16716399+ go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-- B9I369_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00024520g0005.1 protein AED:0.20 eAED:0.20 QI:84|1|1|1|0.71|0.62|8|336|822; (*SWP) sp|A5JTQ3|XYL2_MEDSV (e_value=0.0) Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1;; (*TAIR) AT5G64570.1 (e_value=0.0) | Symbols: XYL4, ATBXL4 | beta-D-xylosidase 4 | chr5:25810227-25813309 REVERSE LENGTH=784;; (*ITAG) Solyc01g104950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85031292-85035396 transcript_region:SL2.40ch01:85031292..85035396- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0046556 NbS00002752g0001.1 protein AED:0.27 eAED:0.57 QI:0|0|0|1|0|0|4|0|121; (*ITAG) Solyc01g102850.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83299072-83303254 transcript_region:SL2.40ch01:83299072..83303254+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00016518g0005.1 protein AED:0.05 eAED:0.05 QI:183|0.75|0.6|1|0.25|0.2|5|0|509; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc08g066940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53019905-53022956 transcript_region:SL2.40ch08:53019905..53022956- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00029711g0004.1 protein AED:0.17 eAED:0.19 QI:0|0|0|1|0|0.16|6|0|374; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-17) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-18) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011540.1.1 (e_value=5e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00011702g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|144; (*SWP) sp|Q9FK05|PME61_ARATH (e_value=1e-78) Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1;; (*TAIR) AT5G53370.1 (e_value=1e-79) | Symbols: ATPMEPCRF, PMEPCRF | pectin methylesterase PCR fragment F | chr5:21649683-21651530 REVERSE LENGTH=587;; (*ITAG) Solyc06g051960.2.1 (e_value=5e-95) genomic_reference:SL2.40ch06 gene_region:32128328-32131813 transcript_region:SL2.40ch06:32128328..32131813+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9IDR8_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00025133g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.5|0.4|1|1|1|5|0|444; (*SWP) sp|O23006|LYM2_ARATH (e_value=2e-67) LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1;; (*TAIR) AT2G17120.1 (e_value=2e-68) | Symbols: LYM2 | lysm domain GPI-anchored protein 2 precursor | chr2:7459156-7460648 FORWARD LENGTH=350;; (*ITAG) Solyc01g112080.2.1 (e_value=2e-147) genomic_reference:SL2.40ch01 gene_region:89951336-89953057 transcript_region:SL2.40ch01:89951336..89953057+ go_terms:GO:0016998 functional_description:"LysM-domain GPI-anchored protein (AHRD V1 **-- Q4VVD8_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00052196g0004.1 protein AED:0.14 eAED:0.14 QI:74|0.83|1|1|0.66|0.71|7|20|318; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-29) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G25270.1 (e_value=5e-47) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:8857726-8859909 FORWARD LENGTH=355;; (*ITAG) Solyc11g005350.1.1 (e_value=2e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:274195-279749 transcript_region:SL2.40ch11:274195..279749- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00045095g0004.1 protein AED:0.16 eAED:0.17 QI:0|0.25|0|0.8|1|0.6|5|0|1189; (*SWP) sp|Q8H0U8|RH42_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2;; (*TAIR) AT1G20920.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:7285342-7288842 FORWARD LENGTH=1166;; (*ITAG) Solyc12g098700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64460870-64464313 transcript_region:SL2.40ch12:64460870..64464313+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00028462g0008.1 protein AED:0.24 eAED:0.27 QI:0|0.5|0.22|1|0.37|0.55|9|0|298; (*TAIR) AT3G04020.1 (e_value=4e-64) | Symbols: | unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:1040548-1042377 FORWARD LENGTH=304;; (*ITAG) Solyc06g043070.2.1 (e_value=1e-105) genomic_reference:SL2.40ch06 gene_region:25999771-26005144 transcript_region:SL2.40ch06:25999771..26005144+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043590g0001.1 protein AED:0.32 eAED:0.32 QI:336|0.83|0.92|1|1|1|13|0|359; (*SWP) sp|O94432|YHKF_SCHPO (e_value=6e-27) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT4G36960.2 (e_value=6e-149) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:17427349-17429589 FORWARD LENGTH=379;; (*ITAG) Solyc02g090910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46964307-46971505 transcript_region:SL2.40ch02:46964307..46971505- go_terms:GO:0008266 functional_description:"RNA-binding like protein (AHRD V1 **-* O23189_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00043590g0007.1 protein AED:0.38 eAED:0.38 QI:0|0.66|0.25|1|1|0.75|4|0|279; (*TAIR) AT4G36970.1 (e_value=7e-39) | Symbols: | Remorin family protein | chr4:17429826-17431459 REVERSE LENGTH=427;; (*ITAG) Solyc02g090900.2.1 (e_value=2e-146) genomic_reference:SL2.40ch02 gene_region:46960637-46963741 transcript_region:SL2.40ch02:46960637..46963741+ functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00004464g0010.1 protein AED:0.01 eAED:0.01 QI:126|1|1|1|1|1|2|215|1014; (*SWP) sp|Q9FRS6|PXL1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1;; (*TAIR) AT1G08590.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:2718859-2721948 FORWARD LENGTH=1029;; (*ITAG) Solyc04g050170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44894101-44897749 transcript_region:SL2.40ch04:44894101..44897749+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004464g0003.1 protein AED:0.31 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|138; (*TAIR) AT1G13810.1 (e_value=3e-43) | Symbols: | Restriction endonuclease, type II-like superfamily protein | chr1:4734088-4735164 FORWARD LENGTH=303;; (*ITAG) Solyc10g081050.1.1 (e_value=2e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61554963-61555892 transcript_region:SL2.40ch10:61554963..61555892- go_terms:GO:0003677,GO:0004518 functional_description:"Phage-related exonuclease (AHRD V1 *-*- C6ADF2_BARGA); contains Interpro domain(s) IPR017482 Putative phage-type endonuclease "; GO:0003677,GO:0004518 NbS00004464g0107.1 protein AED:0.20 eAED:0.21 QI:111|0.59|0.57|0.89|0.70|0.78|28|301|1515 NbS00004464g0110.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|2|0|572 NbS00013435g0006.1 protein AED:0.02 eAED:0.02 QI:196|1|1|1|1|1|5|726|226; (*TAIR) AT5G21430.1 (e_value=1e-46) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:7222294-7223400 FORWARD LENGTH=218;; (*ITAG) Solyc06g082970.2.1 (e_value=2e-70) genomic_reference:SL2.40ch06 gene_region:44856886-44858406 transcript_region:SL2.40ch06:44856886..44858406+ go_terms:GO:0031072 functional_description:"DnaJ domain family (AHRD V1 ***- Q84VQ4_ARATH); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00013435g0112.1 protein AED:0.22 eAED:0.22 QI:140|0.53|0.31|1|0.8|0.75|16|0|947 NbS00013435g0101.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|104 NbS00013435g0113.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|1|2|0|196 NbS00040246g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|208; (*SWP) sp|Q9SEU6|TRXM4_ARATH (e_value=3e-54) Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2;; (*TAIR) AT3G15360.1 (e_value=2e-55) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc12g013810.1.1 (e_value=3e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4597746-4599971 transcript_region:SL2.40ch12:4597746..4599971- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00027093g0004.1 protein AED:0.11 eAED:0.15 QI:326|0.93|0.94|1|0.81|0.88|17|122|584; (*SWP) sp|Q9ZPI6|AIM1_ARATH (e_value=0.0) Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1;; (*TAIR) AT4G29010.1 (e_value=0.0) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc08g068390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54725090-54729981 transcript_region:SL2.40ch08:54725090..54729981+ go_terms:GO:0004300 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0004300 NbS00001721g0006.1 protein AED:0.01 eAED:0.01 QI:131|1|1|1|0|0|2|183|354; (*SWP) sp|Q9FZ96|PUP1_ARATH (e_value=7e-121) Purine permease 1 OS=Arabidopsis thaliana GN=PUP1 PE=1 SV=1;; (*TAIR) AT1G28230.1 (e_value=6e-122) | Symbols: PUP1, ATPUP1 | purine permease 1 | chr1:9862200-9864554 REVERSE LENGTH=356;; (*ITAG) Solyc12g087870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00002946g0006.1 protein AED:0.05 eAED:0.05 QI:42|0.5|0.66|1|0.5|0.33|3|210|1140; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=5e-116) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*TAIR) AT1G59780.1 (e_value=3e-56) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906;; (*ITAG) Solyc05g013280.2.1 (e_value=4e-149) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00008485g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.71|1|1|0.85|7|0|327; (*SWP) sp|A4YGN0|SUCD_METS5 (e_value=5e-62) Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1424 PE=1 SV=1;; (*TAIR) AT5G63620.1 (e_value=0.0) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:25466380-25468296 REVERSE LENGTH=427;; (*ITAG) Solyc05g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64952197-64957183 transcript_region:SL2.40ch05:64952197..64957183- go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase-like protein (AHRD V1 **** Q8LDF7_ARATH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00010638g0006.1 protein AED:0.10 eAED:0.13 QI:24|1|0.5|1|1|1|2|0|342; (*SWP) sp|O74913|YJ72_SCHPO (e_value=6e-33) Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.02c PE=2 SV=1;; (*TAIR) AT4G24220.1 (e_value=2e-173) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388;; (*ITAG) Solyc10g049620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41753579-41754837 transcript_region:SL2.40ch10:41753579..41754837+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00010638g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|77; (*TAIR) AT4G24220.1 (e_value=1e-29) | Symbols: VEP1, AWI31 | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12565219-12566474 FORWARD LENGTH=388;; (*ITAG) Solyc10g049620.1.1 (e_value=9e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41753579-41754837 transcript_region:SL2.40ch10:41753579..41754837+ go_terms:GO:0008152 functional_description:"Progesterone 5-beta-reductase (AHRD V1 ***- D6NIX2_ATRBE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00022310g0012.1 protein AED:0.39 eAED:0.39 QI:152|1|0.75|1|1|1|4|0|141; (*TAIR) AT4G34190.1 (e_value=2e-42) | Symbols: SEP1 | stress enhanced protein 1 | chr4:16372606-16373511 REVERSE LENGTH=146;; (*ITAG) Solyc01g107660.2.1 (e_value=2e-76) genomic_reference:SL2.40ch01 gene_region:86892697-86895053 transcript_region:SL2.40ch01:86892697..86895053- go_terms:GO:0016168 functional_description:"Stress enhanced protein 1 (Fragment) (AHRD V1 *-*- C6JT32_9MYRT)"; GO:0016168 NbS00022310g0013.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|780; (*SWP) sp|C0LGS3|Y4372_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1;; (*TAIR) AT4G37250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:17527789-17530191 REVERSE LENGTH=768;; (*ITAG) Solyc01g107650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86888396-86891687 transcript_region:SL2.40ch01:86888396..86891687+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00047748g0006.1 protein AED:0.38 eAED:0.43 QI:0|0.5|0.28|1|0.83|0.85|7|0|392; (*TAIR) AT5G42670.1 (e_value=1e-48) | Symbols: | Agenet domain-containing protein | chr5:17108262-17110235 FORWARD LENGTH=294;; (*ITAG) Solyc03g005440.2.1 (e_value=4e-171) genomic_reference:SL2.40ch03 gene_region:326486-334139 transcript_region:SL2.40ch03:326486..334139+ go_terms:GO:0032259,GO:0003723 functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *--- Q9FMZ7_ARATH); contains Interpro domain(s) IPR008395 Agenet "; GO:0032259,GO:0003723 NbS00005530g0001.1 protein AED:0.02 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|229; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=7e-34) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*ITAG) Solyc05g007630.2.1 (e_value=6e-41) genomic_reference:SL2.40ch05 gene_region:2145078-2149204 transcript_region:SL2.40ch05:2145078..2149204- go_terms:GO:0006952,GO:0045893,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0045893,GO:0006915 NbS00005530g0006.1 protein AED:0.20 eAED:0.23 QI:311|0.5|0.6|1|1|1|5|0|734; (*TAIR) AT2G39950.1 (e_value=2e-105) | Symbols: | unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). | chr2:16676758-16680204 REVERSE LENGTH=636;; (*ITAG) Solyc05g052630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61990786-61996229 transcript_region:SL2.40ch05:61990786..61996229- functional_description:"Unknown Protein (AHRD V1)"; NbS00011739g0002.1 protein AED:0.28 eAED:0.61 QI:102|0|0.5|1|0|0.5|2|244|20 NbS00018556g0006.1 protein AED:0.13 eAED:0.13 QI:369|0.75|0.66|0.88|0.62|0.44|9|213|475; (*TAIR) AT4G05120.1 (e_value=2e-172) | Symbols: ENT3, FUR1, ATENT3 | Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418;; (*ITAG) Solyc10g005450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:329254-332201 transcript_region:SL2.40ch10:329254..332201+ go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H1Z9_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0005337 NbS00011558g0010.1 protein AED:0.12 eAED:0.12 QI:250|1|1|1|0.83|0.57|7|721|379; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=5e-74) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT2G20770.1 (e_value=0.0) | Symbols: GCL2 | GCR2-like 2 | chr2:8945380-8947041 FORWARD LENGTH=405;; (*ITAG) Solyc10g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2583446-2586373 transcript_region:SL2.40ch10:2583446..2586373+ go_terms:GO:0010427 functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; GO:0010427 NbS00011558g0007.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|0|0|2|0|112; (*TAIR) AT3G51000.1 (e_value=2e-11) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=8e-38) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00033622g0008.1 protein AED:0.34 eAED:0.34 QI:325|0.66|0.75|0.75|1|1|4|0|142; (*TAIR) AT2G47710.1 (e_value=2e-52) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc06g084540.2.1 (e_value=8e-68) genomic_reference:SL2.40ch06 gene_region:45921673-45922823 transcript_region:SL2.40ch06:45921673..45922823+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00033622g0002.1 protein AED:0.29 eAED:0.29 QI:211|0.83|0.76|1|1|1|13|0|527; (*SWP) sp|B3H5Q1|BGL11_ARATH (e_value=0.0) Beta-glucosidase 11 OS=Arabidopsis thaliana GN=BGLU11 PE=2 SV=2;; (*TAIR) AT1G02850.2 (e_value=0.0) | Symbols: BGLU11 | beta glucosidase 11 | chr1:630569-633085 FORWARD LENGTH=497;; (*ITAG) Solyc09g075060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62378413-62381481 transcript_region:SL2.40ch09:62378413..62381481- go_terms:GO:0004338 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00040523g0001.1 protein AED:0.05 eAED:0.14 QI:45|0|0.33|1|0|0|3|0|288; (*SWP) sp|P0C042|Y4597_ARATH (e_value=6e-95) Uncharacterized protein At4g15970 OS=Arabidopsis thaliana GN=At4g15970 PE=2 SV=1;; (*TAIR) AT1G14590.1 (e_value=4e-121) | Symbols: | Nucleotide-diphospho-sugar transferase family protein | chr1:4998957-5000617 REVERSE LENGTH=386;; (*ITAG) Solyc08g074490.2.1 (e_value=3e-142) genomic_reference:SL2.40ch08 gene_region:55758803-55765932 transcript_region:SL2.40ch08:55758803..55765932+ functional_description:"Regulatory protein (AHRD V1 **-- Q8LFS2_ARATH)"; NbS00017010g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|108; (*ITAG) Solyc05g013980.2.1 (e_value=5e-25) genomic_reference:SL2.40ch05 gene_region:7480342-7481033 transcript_region:SL2.40ch05:7480342..7481033+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009869g0006.1 protein AED:0.20 eAED:0.24 QI:0|1|0.66|1|1|1|3|0|393; (*SWP) sp|Q9FYF9|FB76_ARATH (e_value=7e-162) F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1;; (*TAIR) AT1G67340.1 (e_value=5e-163) | Symbols: | HCP-like superfamily protein with MYND-type zinc finger | chr1:25230323-25231622 FORWARD LENGTH=379;; (*ITAG) Solyc05g015420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:10484003-10485747 transcript_region:SL2.40ch05:10484003..10485747- go_terms:GO:0005488,GO:0008270 functional_description:"MYND finger family protein expressed (AHRD V1 ***- Q2R448_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0008270 NbS00018273g0003.1 protein AED:0.29 eAED:0.29 QI:80|1|0.75|1|1|1|4|0|395; (*SWP) sp|A9IVX6|RS9_BART1 (e_value=4e-49) 30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1;; (*TAIR) AT3G49080.1 (e_value=3e-115) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:18194500-18196657 REVERSE LENGTH=430;; (*ITAG) Solyc10g080160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60857981-60862695 transcript_region:SL2.40ch10:60857981..60862695- go_terms:GO:0005840 functional_description:"30S ribosomal protein S9-like (AHRD V1 *-*- Q9SMU5_ARATH); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0005840 NbS00006790g0007.1 protein AED:0.30 eAED:0.30 QI:312|0.90|0.91|1|0.90|0.75|12|0|375; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=4e-23) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19420.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc08g075020.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00009077g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|207; (*TAIR) AT1G11700.1 (e_value=1e-52) | Symbols: | Protein of unknown function, DUF584 | chr1:3945852-3946457 FORWARD LENGTH=201;; (*ITAG) Solyc02g032800.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:19965521-19966168 transcript_region:SL2.40ch02:19965521..19966168- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-*- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00009077g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|0.75|0|0|4|34|98; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=8e-20) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT4G21910.3 (e_value=4e-40) | Symbols: | MATE efflux family protein | chr4:11625821-11630964 REVERSE LENGTH=507;; (*ITAG) Solyc02g032660.2.1 (e_value=3e-51) genomic_reference:SL2.40ch02 gene_region:19624432-19630913 transcript_region:SL2.40ch02:19624432..19630913- go_terms:GO:0015559 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q10HY1_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00009077g0003.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|156; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-40) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=3e-70) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g032660.2.1 (e_value=1e-73) genomic_reference:SL2.40ch02 gene_region:19624432-19630913 transcript_region:SL2.40ch02:19624432..19630913- go_terms:GO:0015559 functional_description:"MATE efflux family protein expressed (AHRD V1 **-- Q10HY1_ORYSJ); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00003173g0009.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|3|0|283; (*ITAG) Solyc02g030330.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16223612-16223869 transcript_region:SL2.40ch02:16223612..16223869- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00009585g0001.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|2|0|668; (*SWP) sp|Q9FK93|PP406_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1;; (*TAIR) AT5G39680.1 (e_value=0.0) | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:15884236-15886368 REVERSE LENGTH=710;; (*ITAG) Solyc11g065250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47710375-47712495 transcript_region:SL2.40ch11:47710375..47712495+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00053339g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|68; (*TAIR) AT5G18790.1 (e_value=3e-16) | Symbols: | Ribosomal protein L33 family protein | chr5:6266324-6266500 REVERSE LENGTH=58;; (*ITAG) Solyc04g016390.1.1 (e_value=4e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:7192698-7192880 transcript_region:SL2.40ch04:7192698..7192880+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L33 (AHRD V1 ***- B9RSX3_RICCO); contains Interpro domain(s) IPR001705 Ribosomal protein L33 "; GO:0005840 NbS00031446g0001.1 protein AED:0.15 eAED:0.17 QI:757|0.5|0.33|1|1|1|3|0|118; (*ITAG) Solyc07g015850.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00001207g0010.1 protein AED:0.01 eAED:0.01 QI:185|1|1|1|0.5|0.33|3|419|286; (*SWP) sp|Q9SV30|GATA8_ARATH (e_value=2e-28) GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1;; (*TAIR) AT3G54810.1 (e_value=2e-29) | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GATA-type zinc finger transcription factor family protein | chr3:20296957-20298236 FORWARD LENGTH=322;; (*ITAG) Solyc04g015360.2.1 (e_value=2e-115) genomic_reference:SL2.40ch04 gene_region:5562886-5565490 transcript_region:SL2.40ch04:5562886..5565490- go_terms:GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00001207g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|884; (*SWP) sp|O65238|Y5537_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 OS=Arabidopsis thaliana GN=At5g35370 PE=2 SV=2;; (*TAIR) AT5G35370.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr5:13588564-13591182 REVERSE LENGTH=872;; (*ITAG) Solyc04g015460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5667893-5670819 transcript_region:SL2.40ch04:5667893..5670819+ go_terms:GO:0005515 functional_description:"S-receptor kinase (AHRD V1 ***- Q9FZP3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00001207g0008.1 protein AED:0.06 eAED:0.14 QI:39|1|0.33|1|0|0|3|0|138; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=1e-60) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT1G21980.1 (e_value=9e-62) | Symbols: ATPIP5K1, ATPIPK1, PIP5K1 | phosphatidylinositol-4-phosphate 5-kinase 1 | chr1:7735053-7738309 FORWARD LENGTH=752;; (*ITAG) Solyc04g015470.2.1 (e_value=8e-79) genomic_reference:SL2.40ch04 gene_region:5671509-5675606 transcript_region:SL2.40ch04:5671509..5675606- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00001207g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.87|0.77|1|0.75|0.77|9|0|678; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT1G21980.1 (e_value=0.0) | Symbols: ATPIP5K1, ATPIPK1, PIP5K1 | phosphatidylinositol-4-phosphate 5-kinase 1 | chr1:7735053-7738309 FORWARD LENGTH=752;; (*ITAG) Solyc04g015470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5671509-5675606 transcript_region:SL2.40ch04:5671509..5675606- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00029127g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|128; (*ITAG) Solyc12g099200.1.1 (e_value=5e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64775547-64776957 transcript_region:SL2.40ch12:64775547..64776957+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** O49908_TOBAC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00005878g0110.1 protein AED:0.24 eAED:0.24 QI:198|1|1|1|0.66|0.5|4|555|113 NbS00005878g0109.1 protein AED:0.20 eAED:0.20 QI:242|0.9|0.81|1|0.9|0.90|11|0|567 NbS00002052g0009.1 protein AED:0.09 eAED:0.09 QI:31|0.8|0.83|1|0.8|0.66|6|282|558; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=0.0) Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1;; (*TAIR) AT5G03260.1 (e_value=0.0) | Symbols: LAC11 | laccase 11 | chr5:777198-779338 REVERSE LENGTH=557;; (*ITAG) Solyc02g085110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42674495-42676816 transcript_region:SL2.40ch02:42674495..42676816- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00002052g0002.1 protein AED:0.44 eAED:0.44 QI:0|0.8|0.5|0.83|1|1|6|0|190; (*SWP) sp|Q40784|AAPC_CENCI (e_value=2e-13) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G66530.2 (e_value=1e-105) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:26553821-26555575 REVERSE LENGTH=307;; (*ITAG) Solyc02g085100.2.1 (e_value=9e-131) genomic_reference:SL2.40ch02 gene_region:42669467-42673829 transcript_region:SL2.40ch02:42669467..42673829- go_terms:GO:0005515,GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7MMG0_ARALY); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0005515,GO:0047938 NbS00002052g0011.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.2|1|1|5|0|133 NbS00002052g0003.1 protein AED:0.28 eAED:0.28 QI:170|1|0.5|1|0|0|2|0|299; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=7e-128) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=5e-129) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc02g085090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42668282-42669181 transcript_region:SL2.40ch02:42668282..42669181+ go_terms:GO:0005515 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005515 NbS00006943g0005.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0|0.33|3|0|314; (*ITAG) Solyc01g065740.2.1 (e_value=1e-85) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006943g0006.1 protein AED:0.38 eAED:0.46 QI:0|0|0|1|0|0|2|0|129; (*ITAG) Solyc04g072330.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:56943238-56944733 transcript_region:SL2.40ch04:56943238..56944733- go_terms:GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00014988g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|433; (*TAIR) AT5G55530.2 (e_value=1e-141) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr5:22494439-22495656 FORWARD LENGTH=405;; (*ITAG) Solyc07g048040.1.1 (e_value=2e-124) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56554258-56555475 transcript_region:SL2.40ch07:56554258..56555475- functional_description:"C2 domain-containing protein (AHRD V1 ***- D7MKI6_ARALY); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; NbS00018335g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|4|0|96; (*SWP) sp|P54926|IMP1_SOLLC (e_value=7e-29) Inositol monophosphatase 1 OS=Solanum lycopersicum GN=IMP1 PE=2 SV=1;; (*TAIR) AT3G02870.3 (e_value=1e-24) | Symbols: VTC4 | Inositol monophosphatase family protein | chr3:627742-629682 REVERSE LENGTH=268;; (*ITAG) Solyc04g014800.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:5038853-5042771 transcript_region:SL2.40ch04:5038853..5042771+ go_terms:GO:0008934 functional_description:"L-galactose-1-phosphate phosphatase 2"; GO:0008934 NbS00022432g0005.1 protein AED:0.21 eAED:0.22 QI:0|0.33|0|1|0.66|0.75|4|0|584; (*SWP) sp|Q9LXA7|GTE2_ARATH (e_value=2e-71) Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2;; (*TAIR) AT5G10550.1 (e_value=1e-71) | Symbols: GTE2 | global transcription factor group E2 | chr5:3332855-3335232 REVERSE LENGTH=678;; (*ITAG) Solyc02g091660.2.1 (e_value=8e-151) genomic_reference:SL2.40ch02 gene_region:47480890-47483281 transcript_region:SL2.40ch02:47480890..47483281- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *--* D7KG11_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00002253g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|749; (*SWP) sp|O23530|SNC1_ARATH (e_value=1e-19) Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3;; (*TAIR) AT5G36930.2 (e_value=6e-48) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc02g032200.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:18711443-18715788 transcript_region:SL2.40ch02:18711443..18715788+ go_terms:GO:0030275 functional_description:"Tir-lrr, resistance protein fragment"; GO:0030275 NbS00059273g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.4|0.8|0.5|0.2|5|0|259; (*SWP) sp|Q91ZQ0|VMP1_RAT (e_value=9e-38) Vacuole membrane protein 1 OS=Rattus norvegicus GN=Vmp1 PE=1 SV=1;; (*TAIR) AT4G14950.2 (e_value=9e-131) | Symbols: | SNARE associated Golgi protein family | chr4:8545551-8547566 FORWARD LENGTH=355;; (*ITAG) Solyc09g075850.2.1 (e_value=4e-171) genomic_reference:SL2.40ch09 gene_region:62981885-62989442 transcript_region:SL2.40ch09:62981885..62989442- functional_description:"Transmembrane protein 49 (AHRD V1 ***- B6TDW5_MAIZE)"; NbS00022596g0014.1 protein AED:0.37 eAED:0.37 QI:386|0.66|0.5|0.75|0.33|0.5|4|0|117; (*SWP) sp|Q94A21|SPX4_ARATH (e_value=5e-50) SPX domain-containing protein 4 OS=Arabidopsis thaliana GN=SPX4 PE=2 SV=1;; (*TAIR) AT5G15330.1 (e_value=4e-51) | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:4980595-4982043 FORWARD LENGTH=318;; (*ITAG) Solyc02g088210.2.1 (e_value=8e-73) genomic_reference:SL2.40ch02 gene_region:44949824-44954729 transcript_region:SL2.40ch02:44949824..44954729+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00022596g0011.1 protein AED:0.96 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|59 NbS00022596g0020.1 protein AED:0.30 eAED:0.30 QI:1968|0.81|0.91|1|0.63|0.58|12|88|585; (*SWP) sp|Q9LJW0|PHO19_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 9 OS=Arabidopsis thaliana GN=PHO1-H9 PE=2 SV=1;; (*TAIR) AT3G29060.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr3:11044990-11048465 REVERSE LENGTH=800;; (*ITAG) Solyc02g088220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44955291-44959097 transcript_region:SL2.40ch02:44955291..44959097- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00022596g0002.1 protein AED:0.35 eAED:0.47 QI:0|0|0|1|1|1|7|0|407; (*SWP) sp|Q9LVA2|PP443_ARATH (e_value=1e-51) Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1;; (*TAIR) AT5G62370.1 (e_value=1e-52) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:25041901-25044849 REVERSE LENGTH=982;; (*ITAG) Solyc03g093150.1.1 (e_value=4e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47798304-47801246 transcript_region:SL2.40ch03:47798304..47801246- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00022596g0016.1 protein AED:0.49 eAED:0.49 QI:0|1|0|1|0|0.5|2|0|60; (*SWP) sp|Q9LJW0|PHO19_ARATH (e_value=1e-17) Phosphate transporter PHO1 homolog 9 OS=Arabidopsis thaliana GN=PHO1-H9 PE=2 SV=1;; (*TAIR) AT3G29060.1 (e_value=8e-19) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr3:11044990-11048465 REVERSE LENGTH=800;; (*ITAG) Solyc02g088230.2.1 (e_value=4e-28) genomic_reference:SL2.40ch02 gene_region:44967484-44971508 transcript_region:SL2.40ch02:44967484..44971508- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00022596g0019.1 protein AED:0.49 eAED:0.83 QI:0|0|0|1|0.2|0|6|0|797; (*SWP) sp|Q9LVA2|PP443_ARATH (e_value=5e-96) Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1;; (*TAIR) AT5G62370.1 (e_value=4e-97) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:25041901-25044849 REVERSE LENGTH=982;; (*ITAG) Solyc03g093150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47798304-47801246 transcript_region:SL2.40ch03:47798304..47801246- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00022596g0018.1 protein AED:0.62 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|352; (*SWP) sp|Q9LVA2|PP443_ARATH (e_value=2e-59) Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1;; (*TAIR) AT5G62370.1 (e_value=1e-60) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:25041901-25044849 REVERSE LENGTH=982;; (*ITAG) Solyc03g093150.1.1 (e_value=4e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47798304-47801246 transcript_region:SL2.40ch03:47798304..47801246- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00000627g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.77|0.8|1|0.66|0.8|10|285|206; (*SWP) sp|Q94743|SORCN_SCHJA (e_value=8e-18) Sorcin OS=Schistosoma japonicum PE=2 SV=1;; (*ITAG) Solyc01g112170.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:89998308-90002839 transcript_region:SL2.40ch01:89998308..90002839- go_terms:GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 **-* Q9S7Z4_MARPO); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00000627g0009.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.5|0.66|3|334|290; (*TAIR) AT2G45250.1 (e_value=2e-22) | Symbols: | Integral membrane protein hemolysin-III homolog | chr2:18661464-18662550 FORWARD LENGTH=204;; (*ITAG) Solyc01g112180.2.1 (e_value=9e-160) genomic_reference:SL2.40ch01 gene_region:90004018-90010183 transcript_region:SL2.40ch01:90004018..90010183+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000627g0007.1 protein AED:0.23 eAED:0.23 QI:96|1|1|1|1|1|6|261|230; (*TAIR) AT4G38370.1 (e_value=3e-108) | Symbols: | Phosphoglycerate mutase family protein | chr4:17970112-17971222 REVERSE LENGTH=225;; (*ITAG) Solyc01g112160.2.1 (e_value=2e-155) genomic_reference:SL2.40ch01 gene_region:89993262-89997889 transcript_region:SL2.40ch01:89993262..89997889+ go_terms:GO:0003824 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- B6UI41_MAIZE); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003824 NbS00010225g0006.1 protein AED:0.19 eAED:0.19 QI:25|1|0.9|1|1|1|10|595|828; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=2e-65) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc08g076390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57566162-57571967 transcript_region:SL2.40ch08:57566162..57571967+ go_terms:GO:0005634 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634 NbS00017088g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|1|1|4|0|949; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=0.0) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=0.0) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00017088g0001.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|836; (*TAIR) AT3G03680.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr3:907624-910677 FORWARD LENGTH=1017;; (*ITAG) Solyc01g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1734046-1737132 transcript_region:SL2.40ch01:1734046..1737132- functional_description:"Protein unc-13 homolog C (AHRD V1 *--- UN13C_RAT); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00017088g0002.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|265; (*TAIR) AT3G03680.1 (e_value=3e-147) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr3:907624-910677 FORWARD LENGTH=1017;; (*ITAG) Solyc01g007170.2.1 (e_value=5e-165) genomic_reference:SL2.40ch01 gene_region:1734046-1737132 transcript_region:SL2.40ch01:1734046..1737132- functional_description:"Protein unc-13 homolog C (AHRD V1 *--- UN13C_RAT); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00017088g0009.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.25|1|1|4|0|61 NbS00021963g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|1|1|3|0|814; (*SWP) sp|O13864|IMB1_SCHPO (e_value=6e-140) Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=2 SV=1;; (*TAIR) AT3G08947.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00014559g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|105; (*ITAG) Solyc11g006230.1.1 (e_value=1e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:981174-984561 transcript_region:SL2.40ch11:981174..984561- functional_description:"Calcium-responsive transactivator (AHRD V1 *--- CREST_XENLA); contains Interpro domain(s) IPR007726 SSXT "; NbS00012880g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.95|0.90|1|0.92|0.90|41|0|1958; (*SWP) sp|Q9LXT9|CALS3_ARATH (e_value=0.0) Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3;; (*TAIR) AT5G13000.1 (e_value=0.0) | Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955;; (*ITAG) Solyc01g006370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:983795-1005620 transcript_region:SL2.40ch01:983795..1005620- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00012880g0013.1 protein AED:0.21 eAED:0.25 QI:0|0.66|0.68|1|0.66|0.63|19|0|704; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=0.0) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2;; (*TAIR) AT3G07160.1 (e_value=0.0) | Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890;; (*ITAG) Solyc01g006360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:955781-982687 transcript_region:SL2.40ch01:955781..982687- functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00040248g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|377; (*TAIR) AT5G28040.1 (e_value=2e-18) | Symbols: | DNA-binding storekeeper protein-related transcriptional regulator | chr5:10037654-10038937 REVERSE LENGTH=427;; (*ITAG) Solyc05g051330.1.1 (e_value=1e-116) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:60754165-60755172 transcript_region:SL2.40ch05:60754165..60755172- functional_description:"Transcription regulator (AHRD V1 ***- D7L304_ARALY); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; NbS00040248g0019.1 protein AED:0.11 eAED:0.11 QI:0|1|0.8|1|0.5|0.6|5|0|308; (*SWP) sp|Q9P6N9|PER1_SCHPO (e_value=3e-50) Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=2 SV=1;; (*TAIR) AT1G16560.3 (e_value=4e-134) | Symbols: | Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342;; (*ITAG) Solyc05g051320.1.1 (e_value=4e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60749337-60751829 transcript_region:SL2.40ch05:60749337..60751829+ go_terms:GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_MOUSE); contains Interpro domain(s) IPR007217 Per1-like "; GO:0016788 NbS00040248g0018.1 protein AED:0.16 eAED:0.18 QI:0|0.5|0.36|1|0.4|0.36|11|0|460; (*TAIR) AT1G09910.1 (e_value=2e-155) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc05g051350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60767923-60775819 transcript_region:SL2.40ch05:60767923..60775819+ go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00040248g0008.1 protein AED:0.33 eAED:0.36 QI:0|0|0|1|1|1|2|0|307; (*SWP) sp|Q3ECH5|PP107_ARATH (e_value=3e-94) Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=1 SV=1;; (*TAIR) AT1G66345.1 (e_value=2e-95) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:24737719-24739353 FORWARD LENGTH=544;; (*ITAG) Solyc05g051340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60759277-60760935 transcript_region:SL2.40ch05:60759277..60760935+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028116g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|367; (*SWP) sp|Q8RXT9|GDL8_ARATH (e_value=3e-93) GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2;; (*TAIR) AT1G28590.1 (e_value=2e-94) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc12g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00013388g0011.1 protein AED:0.06 eAED:0.07 QI:0|0.66|0.5|1|0.66|0.5|4|0|584; (*SWP) sp|Q9FF78|PME46_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 46 OS=Arabidopsis thaliana GN=PME46 PE=2 SV=1;; (*TAIR) AT5G04960.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:1461985-1463809 FORWARD LENGTH=564;; (*ITAG) Solyc02g014300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:6927685-6929515 transcript_region:SL2.40ch02:6927685..6929515+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RPW2_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00013388g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.71|0.73|0.86|1|1|15|474|576; (*SWP) sp|Q7XTT4|NUCL2_ORYSJ (e_value=1e-68) Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2;; (*TAIR) AT3G18610.1 (e_value=1e-64) | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2 | chr3:6404270-6407822 REVERSE LENGTH=636;; (*ITAG) Solyc02g014310.2.1 (e_value=7e-123) genomic_reference:SL2.40ch02 gene_region:6937097-6941898 transcript_region:SL2.40ch02:6937097..6941898- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00013388g0003.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|98; (*TAIR) AT4G15800.1 (e_value=5e-15) | Symbols: RALFL33 | ralf-like 33 | chr4:8984915-8985265 FORWARD LENGTH=116;; (*ITAG) Solyc02g014290.1.1 (e_value=6e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:6909723-6909947 transcript_region:SL2.40ch02:6909723..6909947+ go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 1 (AHRD V1 **-- Q84UC9_9ROSI); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00046060g0007.1 protein AED:0.39 eAED:0.39 QI:0|1|0.33|1|1|0.66|3|0|78; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=1e-21) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT5G02540.1 (e_value=1e-38) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:568609-570720 FORWARD LENGTH=331;; (*ITAG) Solyc10g086390.1.1 (e_value=7e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64549171-64551105 transcript_region:SL2.40ch10:64549171..64551105- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LJU7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00046060g0006.1 protein AED:0.39 eAED:0.51 QI:0|0.5|0|1|0|0|3|0|76; (*SWP) sp|A2RVM0|TIC32_ARATH (e_value=6e-19) Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1;; (*TAIR) AT5G02540.1 (e_value=4e-24) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:568609-570720 FORWARD LENGTH=331;; (*ITAG) Solyc10g086390.1.1 (e_value=4e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64549171-64551105 transcript_region:SL2.40ch10:64549171..64551105- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LJU7_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00046060g0008.1 protein AED:0.21 eAED:0.21 QI:1205|1|1|1|1|0.5|2|0|281; (*ITAG) Solyc10g086360.1.1 (e_value=7e-100) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64540964-64542878 transcript_region:SL2.40ch10:64540964..64542878+ functional_description:"BRI1-KD interacting protein 130 (AHRD V1 ***- Q761Y4_ORYSJ)"; NbS00025582g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|368; (*SWP) sp|Q9P2G9|KLHL8_HUMAN (e_value=1e-20) Kelch-like protein 8 OS=Homo sapiens GN=KLHL8 PE=2 SV=4;; (*TAIR) AT1G16250.1 (e_value=5e-21) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5557214-5558697 FORWARD LENGTH=383;; (*ITAG) Solyc07g054570.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60174238-60176257 transcript_region:SL2.40ch07:60174238..60176257- go_terms:GO:0003779 functional_description:"Kelch-like 8 (AHRD V1 *-*- Q28D69_XENTR); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0003779 NbS00013879g0027.1 protein AED:0.20 eAED:0.20 QI:0|0.87|0.55|1|0.5|0.44|9|0|1007; (*SWP) sp|P09122|DPO3X_BACSU (e_value=6e-38) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT4G24790.2 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr4:12778222-12781345 FORWARD LENGTH=857;; (*ITAG) Solyc03g111680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56369940-56375774 transcript_region:SL2.40ch03:56369940..56375774- go_terms:GO:0009360,GO:0017111,GO:0006260 functional_description:"DNA polymerase III gamma/tau subunit (AHRD V1 *-*- B0JGE9_MICAN); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0017111,GO:0006260 NbS00013879g0014.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|110; (*SWP) sp|O49884|RL30_LUPLU (e_value=2e-52) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G77940.1 (e_value=1e-53) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:29304116-29305288 REVERSE LENGTH=112;; (*ITAG) Solyc04g072660.2.1 (e_value=2e-57) genomic_reference:SL2.40ch04 gene_region:57219626-57221412 transcript_region:SL2.40ch04:57219626..57221412- go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00013879g0028.1 protein AED:0.10 eAED:0.24 QI:0|0|0|1|0.25|0.2|5|0|379; (*SWP) sp|P32112|SAHH_WHEAT (e_value=5e-173) Adenosylhomocysteinase OS=Triticum aestivum GN=SAHH PE=2 SV=1;; (*TAIR) AT3G23810.1 (e_value=9e-173) | Symbols: SAHH2, ATSAHH2 | S-adenosyl-l-homocysteine (SAH) hydrolase 2 | chr3:8588013-8589671 REVERSE LENGTH=485;; (*ITAG) Solyc09g092380.2.1 (e_value=8e-170) genomic_reference:SL2.40ch09 gene_region:66843541-66848047 transcript_region:SL2.40ch09:66843541..66848047+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0004013 NbS00013879g0006.1 protein AED:0.58 eAED:0.65 QI:0|0|0|1|1|1|2|0|162 NbS00013879g0032.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|708; (*SWP) sp|Q9FGR7|PP426_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g50280, chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2 SV=1;; (*TAIR) AT5G50280.1 (e_value=0.0) | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=723;; (*ITAG) Solyc03g111650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56347668-56350481 transcript_region:SL2.40ch03:56347668..56350481+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013879g0025.1 protein AED:0.12 eAED:0.12 QI:198|0.91|0.92|1|1|1|13|661|647; (*SWP) sp|Q9STL8|UFSP_ARATH (e_value=0.0) Probable Ufm1-specific protease OS=Arabidopsis thaliana GN=At3g48380 PE=1 SV=2;; (*TAIR) AT3G48380.1 (e_value=0.0) | Symbols: | Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | chr3:17916468-17920099 FORWARD LENGTH=645;; (*ITAG) Solyc03g111660.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56354498-56361332 transcript_region:SL2.40ch03:56354498..56361332+ functional_description:"Ufm1-specific protease 2 (AHRD V1 *-*- B9EMM1_SALSA); contains Interpro domain(s) IPR012462 Peptidase C78, ubiquitin fold modifier-specific peptidase 1 and 2 "; NbS00013879g0015.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|257; (*SWP) sp|Q8KAW7|KHSE_CHLTE (e_value=3e-26) Homoserine kinase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=9e-73) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=7e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00013879g0030.1 protein AED:0.37 eAED:0.87 QI:0|0|0|1|1|1|3|0|71 NbS00009261g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|0.33|0.25|4|378|644; (*SWP) sp|Q9FKB6|Y5880_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1;; (*TAIR) AT5G48800.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19786881-19789003 FORWARD LENGTH=614;; (*ITAG) Solyc09g061250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:53983844-53986396 transcript_region:SL2.40ch09:53983844..53986396- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00009261g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.2|0.8|0.25|0.2|5|0|332; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=1e-151) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=8e-153) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc06g083500.2.1 (e_value=3e-160) genomic_reference:SL2.40ch06 gene_region:45194883-45198656 transcript_region:SL2.40ch06:45194883..45198656- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009261g0006.1 protein AED:0.32 eAED:0.32 QI:249|1|1|1|1|1|3|304|136; (*SWP) sp|P49098|CYB5_TOBAC (e_value=1e-92) Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=9e-76) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc06g007930.2.1 (e_value=2e-92) genomic_reference:SL2.40ch06 gene_region:1803614-1806403 transcript_region:SL2.40ch06:1803614..1806403+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** B6TTI9_MAIZE); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00009261g0009.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|3|0|309; (*SWP) sp|Q9FQY8|COMT1_CAPAN (e_value=4e-85) Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2;; (*TAIR) AT5G54160.1 (e_value=3e-76) | Symbols: ATOMT1, OMT1 | O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363;; (*ITAG) Solyc06g007960.2.1 (e_value=1e-132) genomic_reference:SL2.40ch06 gene_region:1816553-1820314 transcript_region:SL2.40ch06:1816553..1820314+ go_terms:GO:0033799 functional_description:"O-methyltransferase (AHRD V1 **** Q9LWB8_9ROSI); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0033799 NbC25789814g0001.1 protein AED:0.00 eAED:0.00 QI:51|-1|0|1|-1|1|1|914|156; (*SWP) sp|O65543|PP343_ARATH (e_value=5e-48) Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2 SV=2;; (*TAIR) AT4G31070.1 (e_value=3e-49) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15118696-15120537 REVERSE LENGTH=613;; (*ITAG) Solyc07g042760.1.1 (e_value=8e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53591827-53593638 transcript_region:SL2.40ch07:53591827..53593638+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBJ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00060119g0004.1 protein AED:0.13 eAED:0.13 QI:179|1|1|1|0.75|0.8|5|325|359; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=3e-180) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=2e-151) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00034944g0001.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.66|1|1|3|0|84; (*ITAG) Solyc12g010690.1.1 (e_value=3e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3627524-3630301 transcript_region:SL2.40ch12:3627524..3630301+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 1 (AHRD V1 ***- GTR1_RABIT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00001098g0004.1 protein AED:0.24 eAED:0.24 QI:4|1|1|1|1|1|6|240|580; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=9e-47) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=7e-48) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc11g072330.1.1 (e_value=1e-59) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:52622729-52628560 transcript_region:SL2.40ch11:52622729..52628560+ go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 ***- Q9AV93_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0006355,GO:0045449 NbS00001098g0008.1 protein AED:0.26 eAED:0.26 QI:36|1|0.8|1|1|1|5|516|349; (*SWP) sp|P92965|RSP40_ARATH (e_value=2e-90) Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2;; (*TAIR) AT5G52040.2 (e_value=1e-91) | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=357;; (*ITAG) Solyc11g072340.1.1 (e_value=3e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52633337-52636148 transcript_region:SL2.40ch11:52633337..52636148+ go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 **-- D8L816_9POAL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00001098g0006.1 protein AED:0.57 eAED:0.77 QI:0|0|0.25|0.5|1|1|4|0|73 NbS00025102g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|221; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=3e-35) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=2e-36) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090370.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75831429-75832094 transcript_region:SL2.40ch01:75831429..75832094- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007968g0002.1 protein AED:0.62 eAED:0.62 QI:253|0.66|0.5|0.75|0.66|0.5|4|0|112 NbS00016903g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.33|1|1|1|3|0|167; (*SWP) sp|Q40089|ATP4_IPOBA (e_value=3e-90) ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G47030.1 (e_value=1e-71) | Symbols: | ATPase, F1 complex, delta/epsilon subunit | chr5:19090384-19092034 FORWARD LENGTH=203;; (*ITAG) Solyc03g095190.2.1 (e_value=1e-88) genomic_reference:SL2.40ch03 gene_region:49598390-49602085 transcript_region:SL2.40ch03:49598390..49602085- go_terms:GO:0008270,GO:0016887 functional_description:"ATP synthase epsilon chain (AHRD V1 ***- A3UHR9_9RHOB); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0008270,GO:0016887 NbS00016903g0006.1 protein AED:0.22 eAED:0.29 QI:0|0|0|0.33|1|1|3|0|292; (*TAIR) AT1G32740.1 (e_value=1e-24) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:11844883-11846082 FORWARD LENGTH=312;; (*ITAG) Solyc00g024160.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12183146-12184149 transcript_region:SL2.40ch00:12183146..12184149- go_terms:GO:0008270 functional_description:"ATP binding protein (AHRD V1 **-- D7MPZ5_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00016903g0017.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|0.6|0.75|0.6|5|0|270; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=1e-132) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=9e-134) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc03g094160.2.1 (e_value=7e-175) genomic_reference:SL2.40ch03 gene_region:49508932-49512210 transcript_region:SL2.40ch03:49508932..49512210+ go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00016903g0015.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.71|0.85|1|1|7|0|262; (*SWP) sp|P22302|SODF_NICPL (e_value=1e-97) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G51100.1 (e_value=3e-100) | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305;; (*ITAG) Solyc03g095180.2.1 (e_value=3e-123) genomic_reference:SL2.40ch03 gene_region:49595566-49598384 transcript_region:SL2.40ch03:49595566..49598384+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00016903g0016.1 protein AED:0.26 eAED:0.32 QI:0|1|0.5|1|1|1|2|0|196; (*TAIR) AT5G51110.1 (e_value=6e-55) | Symbols: | Transcriptional coactivator/pterin dehydratase | chr5:20778316-20779380 REVERSE LENGTH=220;; (*ITAG) Solyc00g024150.2.1 (e_value=1e-101) genomic_reference:SL2.40ch00 gene_region:12180218-12182879 transcript_region:SL2.40ch00:12180218..12182879+ go_terms:GO:0004160 functional_description:"Pterin-4-alpha-carbinolamine dehydratase (AHRD V1 *-** B6T9C1_MAIZE); contains Interpro domain(s) IPR001533 Transcriptional coactivator/pterin dehydratase "; GO:0004160 NbS00000915g0003.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|1|1|4|0|232; (*ITAG) Solyc12g038100.1.1 (e_value=7e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:34157356-34158093 transcript_region:SL2.40ch12:34157356..34158093+ functional_description:"Polyprotein (AHRD V1 *-*- Q94HW2_ARATH)"; NbS00000915g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|141; (*ITAG) Solyc01g016970.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:23211802-23212188 transcript_region:SL2.40ch01:23211802..23212188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011645g0009.1 protein AED:0.03 eAED:0.06 QI:273|0.83|0.71|1|0.83|1|7|0|1092; (*TAIR) AT2G19710.1 (e_value=2e-44) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:8506339-8509817 FORWARD LENGTH=937;; (*ITAG) Solyc07g032230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:35885567-35891328 transcript_region:SL2.40ch07:35885567..35891328- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00011645g0011.1 protein AED:0.13 eAED:0.13 QI:154|0.66|0.75|1|0|0.25|4|341|121; (*SWP) sp|Q9XG80|PLA21_ORYSJ (e_value=3e-33) Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica GN=PLA2-I PE=2 SV=1;; (*TAIR) AT4G29460.1 (e_value=1e-27) | Symbols: | Phospholipase A2 family protein | chr4:14483066-14483930 REVERSE LENGTH=187; NbS00011645g0013.1 protein AED:0.26 eAED:0.31 QI:0|0|0|0.6|0.5|0.4|5|0|311; (*SWP) sp|Q05B83|RFC2_BOVIN (e_value=6e-85) Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2 SV=1;; (*TAIR) AT1G63160.1 (e_value=2e-116) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=6e-129) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00015270g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0|1|0.33|0.25|4|0|310; (*SWP) sp|O23039|ZIP5_ARATH (e_value=1e-96) Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=8e-98) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc07g043200.1.1 (e_value=3e-151) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54130351-54132150 transcript_region:SL2.40ch07:54130351..54132150- go_terms:GO:0000006 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006 NbS00010345g0002.1 protein AED:0.19 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|216; (*TAIR) AT1G54400.1 (e_value=2e-15) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20307667-20308768 FORWARD LENGTH=183;; (*ITAG) Solyc03g113180.2.1 (e_value=1e-80) genomic_reference:SL2.40ch03 gene_region:57474316-57475310 transcript_region:SL2.40ch03:57474316..57475310+ functional_description:"class I heat shock protein 3 (AHRD V1 *-*- B6TLK8_MAIZE); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00040224g0001.1 protein AED:0.19 eAED:0.31 QI:0|0|0|1|1|1|3|0|338; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=2e-56) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=2e-57) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc07g008700.2.1 (e_value=8e-60) genomic_reference:SL2.40ch07 gene_region:3667866-3675747 transcript_region:SL2.40ch07:3667866..3675747+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 9 (AHRD V1 ***- FRS9_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00013679g0002.1 protein AED:0.07 eAED:0.07 QI:602|0.88|0.9|1|0.66|0.6|10|3202|561; (*SWP) sp|Q8LGU1|AB8C_ARATH (e_value=3e-143) ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3;; (*TAIR) AT3G21250.2 (e_value=2e-144) | Symbols: MRP6, ABCC8 | multidrug resistance-associated protein 6 | chr3:7457668-7463261 REVERSE LENGTH=1464;; (*ITAG) Solyc12g044820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45606312-45611847 transcript_region:SL2.40ch12:45606312..45611847- go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 ***- B9GX56_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00020580g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.6|1|1|1|5|0|667; (*SWP) sp|Q4WKB9|CWC22_ASPFU (e_value=3e-114) Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1;; (*TAIR) AT1G80930.1 (e_value=3e-179) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc08g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:124884-130281 transcript_region:SL2.40ch08:124884..130281+ go_terms:GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 *-*- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0003723 NbS00020580g0002.1 protein AED:0.17 eAED:0.21 QI:62|0|0.5|1|0|1|2|0|453; (*SWP) sp|P41153|HSF8_SOLPE (e_value=4e-177) Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1;; (*TAIR) AT1G32330.1 (e_value=2e-78) | Symbols: ATHSFA1D, HSFA1D | heat shock transcription factor A1D | chr1:11657265-11660234 REVERSE LENGTH=485;; (*ITAG) Solyc08g005170.2.1 (e_value=9e-173) genomic_reference:SL2.40ch08 gene_region:111412-116839 transcript_region:SL2.40ch08:111412..116839- go_terms:GO:0005515,GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003677 NbS00007719g0015.1 protein AED:0.02 eAED:0.02 QI:205|1|0.33|1|1|1|3|0|127; (*ITAG) Solyc03g026000.2.1 (e_value=4e-57) genomic_reference:SL2.40ch03 gene_region:7792138-7794183 transcript_region:SL2.40ch03:7792138..7794183- functional_description:"Unknown Protein (AHRD V1)"; NbS00007719g0005.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|1225; (*SWP) sp|Q9LYN8|EXS_ARATH (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1;; (*TAIR) AT5G07280.1 (e_value=0.0) | Symbols: EMS1, EXS | Leucine-rich repeat transmembrane protein kinase | chr5:2285088-2288666 FORWARD LENGTH=1192;; (*ITAG) Solyc03g026040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7819600-7823670 transcript_region:SL2.40ch03:7819600..7823670- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007719g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|443; (*TAIR) AT5G52180.1 (e_value=6e-133) | Symbols: | LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:21200165-21201541 REVERSE LENGTH=458;; (*ITAG) Solyc03g026010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7800796-7802172 transcript_region:SL2.40ch03:7800796..7802172+ functional_description:"Transmembrane protein 161B (AHRD V1 *-*- T161B_MOUSE)"; NbS00007719g0021.1 protein AED:0.10 eAED:0.14 QI:0|0.2|0.16|1|0.6|0.83|6|306|522; (*ITAG) Solyc03g025970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7774947-7780827 transcript_region:SL2.40ch03:7774947..7780827+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9I4C0_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00007719g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|135; (*SWP) sp|O26351|Y249_METTH (e_value=9e-17) Uncharacterized protein MTH_249 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_249 PE=3 SV=1;; (*TAIR) AT5G52190.1 (e_value=1e-64) | Symbols: | Sugar isomerase (SIS) family protein | chr5:21201817-21202443 REVERSE LENGTH=208;; (*ITAG) Solyc03g025990.1.1 (e_value=3e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7788120-7788731 transcript_region:SL2.40ch03:7788120..7788731+ functional_description:"Hexulose-6-phosphate isomerase (AHRD V1 **-- Q2RUM7_RHORT)"; NbS00007719g0006.1 protein AED:0.19 eAED:0.22 QI:287|0.66|0.5|1|0.66|0.5|4|0|295; (*SWP) sp|Q652B0|HFB2C_ORYSJ (e_value=1e-57) Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1;; (*TAIR) AT4G11660.1 (e_value=4e-59) | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding transcription factor family protein | chr4:7043006-7044227 FORWARD LENGTH=377;; (*ITAG) Solyc03g026020.2.1 (e_value=1e-70) genomic_reference:SL2.40ch03 gene_region:7810489-7812280 transcript_region:SL2.40ch03:7810489..7812280+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00007719g0016.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|1|0.66|3|366|173; (*TAIR) AT5G52200.1 (e_value=2e-31) | Symbols: | phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191;; (*ITAG) Solyc03g025980.2.1 (e_value=6e-81) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00041372g0009.1 protein AED:0.23 eAED:0.24 QI:0|0.5|0|1|0.5|0.66|3|0|137; (*SWP) sp|P26573|RBS8_NICPL (e_value=7e-74) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38420.1 (e_value=6e-57) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15381203-15381978 REVERSE LENGTH=181;; (*ITAG) Solyc02g063150.2.1 (e_value=3e-73) genomic_reference:SL2.40ch02 gene_region:29802717-29803963 transcript_region:SL2.40ch02:29802717..29803963+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- Q84QE5_TOBAC); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00041372g0008.1 protein AED:0.22 eAED:0.22 QI:8|0.66|0.5|1|1|1|4|0|197; (*SWP) sp|P26573|RBS8_NICPL (e_value=5e-110) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=1e-87) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=3e-108) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00057698g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|73; (*ITAG) Solyc06g071260.2.1 (e_value=6e-15) genomic_reference:SL2.40ch06 gene_region:40233679-40236381 transcript_region:SL2.40ch06:40233679..40236381+ functional_description:"AT3g47831/T23J7 (AHRD V1 ***- Q94F43_ARATH)"; NbS00060902g0002.1 protein AED:0.21 eAED:0.22 QI:0|0|0.33|1|0|0|3|0|235; (*SWP) sp|Q9SUS1|WRK29_ARATH (e_value=4e-26) Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1;; (*TAIR) AT4G23550.1 (e_value=3e-27) | Symbols: WRKY29, ATWRKY29 | WRKY family transcription factor | chr4:12291831-12293088 FORWARD LENGTH=304;; (*ITAG) Solyc08g081610.2.1 (e_value=5e-87) genomic_reference:SL2.40ch08 gene_region:61773941-61776031 transcript_region:SL2.40ch08:61773941..61776031+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00022660g0004.1 protein AED:0.17 eAED:0.25 QI:0|0.12|0.11|0.88|0.75|0.77|9|0|989; (*TAIR) AT5G64420.1 (e_value=3e-87) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=2e-180) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00014816g0002.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|165; (*SWP) sp|Q9C8D1|PUB20_ARATH (e_value=1e-40) U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1;; (*TAIR) AT1G66160.1 (e_value=8e-42) | Symbols: ATCMPG1, CMPG1 | CYS, MET, PRO, and GLY protein 1 | chr1:24637218-24638513 FORWARD LENGTH=431;; (*ITAG) Solyc04g008100.1.1 (e_value=1e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1757824-1759152 transcript_region:SL2.40ch04:1757824..1759152- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00003604g0013.1 protein AED:0.10 eAED:0.10 QI:168|1|0.66|1|0.5|0.66|3|0|382; (*SWP) sp|Q9M2C9|SKIP4_ARATH (e_value=9e-110) F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana GN=SKIP4 PE=1 SV=1;; (*TAIR) AT3G61350.1 (e_value=7e-111) | Symbols: SKIP4 | SKP1 interacting partner 4 | chr3:22703203-22704374 FORWARD LENGTH=358;; (*ITAG) Solyc01g094520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77718537-77721333 transcript_region:SL2.40ch01:77718537..77721333- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00003604g0018.1 protein AED:0.36 eAED:0.36 QI:79|1|1|1|1|1|3|491|435; (*SWP) sp|Q55158|RIBD_SYNY3 (e_value=9e-73) Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribD PE=3 SV=1;; (*TAIR) AT4G20960.1 (e_value=7e-137) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:11212077-11213530 FORWARD LENGTH=426;; (*ITAG) Solyc01g094500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77712515-77715408 transcript_region:SL2.40ch01:77712515..77715408- go_terms:GO:0016787,GO:0003824,GO:0055114 functional_description:"Riboflavin biosynthesis protein ribD (AHRD V1 ***- B6TRH4_MAIZE); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0016787,GO:0003824,GO:0055114 NbS00003604g0016.1 protein AED:0.38 eAED:0.38 QI:0|0.92|0.92|1|0.69|0.78|14|367|356; (*SWP) sp|O14734|ACOT8_HUMAN (e_value=3e-49) Acyl-coenzyme A thioesterase 8 OS=Homo sapiens GN=ACOT8 PE=1 SV=1;; (*TAIR) AT1G01710.1 (e_value=6e-162) | Symbols: | Acyl-CoA thioesterase family protein | chr1:262950-266029 FORWARD LENGTH=427;; (*ITAG) Solyc01g094550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77737129-77748404 transcript_region:SL2.40ch01:77737129..77748404+ go_terms:GO:0006637 functional_description:"Acyl-CoA thioesterase family protein (AHRD V1 ***- D7KP80_ARALY); contains Interpro domain(s) IPR003703 Acyl-CoA thioesterase "; GO:0006637 NbS00003604g0011.1 protein AED:0.58 eAED:0.83 QI:0|0.1|0|0.63|1|1|11|0|340; (*TAIR) AT1G01710.1 (e_value=4e-14) | Symbols: | Acyl-CoA thioesterase family protein | chr1:262950-266029 FORWARD LENGTH=427;; (*ITAG) Solyc01g094500.2.1 (e_value=4e-21) genomic_reference:SL2.40ch01 gene_region:77712515-77715408 transcript_region:SL2.40ch01:77712515..77715408- go_terms:GO:0016787,GO:0003824,GO:0055114 functional_description:"Riboflavin biosynthesis protein ribD (AHRD V1 ***- B6TRH4_MAIZE); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0016787,GO:0003824,GO:0055114 NbS00003604g0015.1 protein AED:0.27 eAED:0.27 QI:628|1|1|1|0.5|0.33|3|254|160; (*ITAG) Solyc05g049940.2.1 (e_value=3e-32) genomic_reference:SL2.40ch05 gene_region:58931871-58935359 transcript_region:SL2.40ch05:58931871..58935359+ functional_description:"T1N6.11 related (AHRD V1 ***- Q2HVL0_MEDTR)"; NbS00015929g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|146; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=6e-38) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT4G25140.1 (e_value=1e-34) | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900498-12901259 FORWARD LENGTH=173;; (*ITAG) Solyc06g034040.1.1 (e_value=3e-42) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:20256027-20256470 transcript_region:SL2.40ch06:20256027..20256470- go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- A5JVA7_FICAW); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00015929g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|211 NbS00015929g0004.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|327; (*SWP) sp|Q9FX56|SOT8_ARATH (e_value=1e-79) Cytosolic sulfotransferase 8 OS=Arabidopsis thaliana GN=SOT8 PE=2 SV=1;; (*TAIR) AT1G13420.1 (e_value=1e-80) | Symbols: ATST4B, ST4B | sulfotransferase 4B | chr1:4604871-4605866 FORWARD LENGTH=331;; (*ITAG) Solyc03g093620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48598697-48599680 transcript_region:SL2.40ch03:48598697..48599680- go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7KQF7_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00008520g0002.1 protein AED:0.00 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|203; (*ITAG) Solyc04g077160.1.1 (e_value=3e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:59683010-59683384 transcript_region:SL2.40ch04:59683010..59683384- functional_description:"Unknown Protein (AHRD V1)"; NbS00008520g0009.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|0.66|1|1|3|0|102; (*SWP) sp|Q9T068|EPFL2_ARATH (e_value=1e-23) EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1;; (*TAIR) AT4G37810.1 (e_value=9e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128;; (*ITAG) Solyc04g077170.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:59687124-59688129 transcript_region:SL2.40ch04:59687124..59688129- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 2 (AHRD V1 ***- EPFL2_ARATH)"; NbS00008520g0008.1 protein AED:0.53 eAED:0.65 QI:0|0|0.33|0.66|0|0.33|3|0|106; (*SWP) sp|O80594|ERG28_ARATH (e_value=3e-25) Ergosterol biosynthetic protein 28 OS=Arabidopsis thaliana GN=At1g10030 PE=2 SV=2;; (*TAIR) AT1G10030.1 (e_value=3e-26) | Symbols: ERG28 | homolog of yeast ergosterol28 | chr1:3273972-3275631 FORWARD LENGTH=129;; (*ITAG) Solyc04g077150.2.1 (e_value=2e-34) genomic_reference:SL2.40ch04 gene_region:59679792-59682733 transcript_region:SL2.40ch04:59679792..59682733+ go_terms:GO:0030674 functional_description:"Erg28 like protein expressed (AHRD V1 ***- Q2QLQ4_ORYSJ); contains Interpro domain(s) IPR005352 Erg28-like "; GO:0030674 NbS00008520g0001.1 protein AED:0.86 eAED:0.86 QI:0|-1|0|1|-1|1|1|0|82 NbS00008520g0010.1 protein AED:0.36 eAED:0.42 QI:0|0|0|1|0|0|2|0|115 NbS00034606g0001.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|388; (*TAIR) AT5G07900.1 (e_value=5e-34) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405;; (*ITAG) Solyc02g082010.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40330026-40331231 transcript_region:SL2.40ch02:40330026..40331231+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00004416g0010.1 protein AED:0.21 eAED:0.22 QI:870|0.87|0.88|1|1|1|9|0|684; (*SWP) sp|Q58G01|LHWL3_ARATH (e_value=8e-106) Transcription factor bHLH155 OS=Arabidopsis thaliana GN=BHLH155 PE=2 SV=1;; (*TAIR) AT2G31280.3 (e_value=7e-107) | Symbols: CPUORF7 | conserved peptide upstream open reading frame 7 | chr2:13339678-13343424 FORWARD LENGTH=737;; (*ITAG) Solyc09g066280.2.1 (e_value=2e-172) genomic_reference:SL2.40ch09 gene_region:60313642-60321060 transcript_region:SL2.40ch09:60313642..60321060- go_terms:GO:0045449 functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *--- Y1615_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00004416g0001.1 protein AED:0.31 eAED:0.49 QI:0|0|0|0.5|1|1|4|0|167; (*ITAG) Solyc06g009920.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:4341939-4342262 transcript_region:SL2.40ch06:4341939..4342262+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004416g0013.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|0|0|2|0|121 NbS00004416g0014.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|83; (*SWP) sp|Q04614|NU4LM_ARATH (e_value=8e-16) NADH-ubiquinone oxidoreductase chain 4L OS=Arabidopsis thaliana GN=ND4L PE=2 SV=2;; (*ITAG) ATMG00650.1 (e_value=2e-22) | Symbols: NAD4L | NADH dehydrogenase subunit 4L | chrM:188929-189231 REVERSE LENGTH=100;; (*ITAG) Solyc01g056670.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:48480224-48480394 transcript_region:SL2.40ch01:48480224..48480394+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit K (AHRD V1 ***- C9YGI3_9BURK); contains Interpro domain(s) IPR001133 NADH:ubiquinone/quinone oxidoreductase, chain 4L "; GO:0055114 NbS00022150g0007.1 protein AED:0.31 eAED:0.57 QI:0|0|0|1|0.5|0.33|3|0|99 NbS00022150g0008.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.5|1|0.5|2|0|81 NbS00053297g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|434; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=8e-115) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=6e-116) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc04g054220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51178522-51181311 transcript_region:SL2.40ch04:51178522..51181311- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00051292g0003.1 protein AED:0.10 eAED:0.10 QI:261|0.8|0.81|1|0.7|0.81|11|140|427; (*SWP) sp|P46277|CCNB1_MEDSV (e_value=0.0) G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1;; (*TAIR) AT1G20610.1 (e_value=4e-144) | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7135073-7137273 REVERSE LENGTH=429;; (*ITAG) Solyc03g032190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00014241g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|201; (*SWP) sp|P00823|ATPA_TOBAC (e_value=5e-67) ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2;; (*ITAG) ATCG00120.1 (e_value=1e-61) | Symbols: ATPA | ATP synthase subunit alpha | chrC:9938-11461 REVERSE LENGTH=507;; (*ITAG) Solyc10g044540.1.1 (e_value=7e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22275795-22277735 transcript_region:SL2.40ch10:22275795..22277735- go_terms:GO:0016469 functional_description:"ATP synthase subunit alpha chloroplastic (AHRD V1 ***- D3WD49_9MAGN); contains Interpro domain(s) IPR018118 ATPase, F1/A1 complex, alpha/beta subunit, N-terminal "; GO:0016469 NbS00008452g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|212 NbS00008452g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.62|1|1|1|8|343|318; (*SWP) sp|Q80WA4|NOVA1_RAT (e_value=2e-16) RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1 PE=2 SV=1;; (*TAIR) AT5G04430.1 (e_value=1e-112) | Symbols: BTR1, BTR1S | binding to TOMV RNA 1L (long form) | chr5:1250602-1253523 REVERSE LENGTH=313;; (*ITAG) Solyc11g007940.1.1 (e_value=3e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2168262-2174193 transcript_region:SL2.40ch11:2168262..2174193+ go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 3 (AHRD V1 ***- Q6AY48_RAT); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00008452g0111.1 protein AED:0.16 eAED:0.16 QI:13|1|0.83|1|1|0.83|6|0|474 NbS00008452g0101.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0|2|347|146 NbS00008452g0102.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|107 NbS00008452g0106.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|59 NbS00012737g0006.1 protein AED:0.44 eAED:0.89 QI:0|0|0|0.75|1|1|4|0|206 NbS00002765g0023.1 protein AED:0.00 eAED:0.00 QI:139|1|1|1|0|0|4|387|161; (*TAIR) AT1G16430.1 (e_value=4e-52) | Symbols: | Surfeit locus protein 5 subunit 22 of Mediator complex | chr1:5614632-5615397 FORWARD LENGTH=150;; (*ITAG) Solyc03g083300.2.1 (e_value=3e-81) genomic_reference:SL2.40ch03 gene_region:46674605-46676608 transcript_region:SL2.40ch03:46674605..46676608- go_terms:GO:0005515 functional_description:"Mediator of RNA polymerase II transcription subunit 22 (AHRD V1 ***- C1BXD5_ESOLU); contains Interpro domain(s) IPR009332 Mediator complex, subunit Med22 "; GO:0005515 NbS00002765g0030.1 protein AED:0.20 eAED:0.20 QI:262|0.8|0.83|1|1|1|6|285|361; (*SWP) sp|Q2V3L3|Y4634_ARATH (e_value=4e-132) Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1;; (*TAIR) AT4G06634.1 (e_value=3e-133) | Symbols: | zinc finger (C2H2 type) family protein | chr4:3764499-3766439 REVERSE LENGTH=387;; (*ITAG) Solyc03g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46676883-46685004 transcript_region:SL2.40ch03:46676883..46685004- go_terms:GO:0003700 functional_description:"Zinc finger transcription factor Gli3 (AHRD V1 *-** Q6U6Z9_DANRE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00002765g0027.1 protein AED:0.04 eAED:0.04 QI:270|1|1|1|0.5|0.66|3|235|30 NbS00002765g0004.1 protein AED:0.07 eAED:0.07 QI:128|0.87|0.88|1|0.87|0.77|9|472|222; (*SWP) sp|Q3HRP0|CNBL7_ORYSJ (e_value=1e-109) Calcineurin B-like protein 7 OS=Oryza sativa subsp. japonica GN=CBL7 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=2e-109) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc03g083320.2.1 (e_value=3e-133) genomic_reference:SL2.40ch03 gene_region:46697415-46700140 transcript_region:SL2.40ch03:46697415..46700140+ go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00002765g0028.1 protein AED:0.07 eAED:0.08 QI:0|0.72|0.66|1|0.63|0.58|12|159|1487; (*SWP) sp|Q9M1C7|AB9C_ARATH (e_value=0.0) ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2;; (*TAIR) AT3G60160.1 (e_value=0.0) | Symbols: ATMRP9, MRP9, ABCC9 | multidrug resistance-associated protein 9 | chr3:22223829-22229195 REVERSE LENGTH=1506;; (*ITAG) Solyc10g024420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13997548-14004636 transcript_region:SL2.40ch10:13997548..14004636- go_terms:GO:0015431 functional_description:"ABC transporter C family member 9 (AHRD V1 **-- AB9C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00002765g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.8|1|0|0.2|5|943|246; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=1e-19) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G58110.2 (e_value=1e-23) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00002765g0014.1 protein AED:0.38 eAED:0.39 QI:0|1|0.75|1|1|1|4|0|540; (*SWP) sp|Q8BVG4|DPP9_MOUSE (e_value=2e-26) Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9 PE=2 SV=2;; (*TAIR) AT5G24260.1 (e_value=0.0) | Symbols: | prolyl oligopeptidase family protein | chr5:8234865-8237810 REVERSE LENGTH=746;; (*ITAG) Solyc03g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46702262-46708474 transcript_region:SL2.40ch03:46702262..46708474+ go_terms:GO:0008239 functional_description:"Dipeptidyl peptidase IV-like protein (AHRD V1 **** Q9FNF6_ARATH); contains Interpro domain(s) IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal "; GO:0008239 NbS00002765g0024.1 protein AED:0.47 eAED:0.48 QI:0|1|0|1|1|1|2|0|135; (*SWP) sp|Q80YA7|DPP8_MOUSE (e_value=5e-20) Dipeptidyl peptidase 8 OS=Mus musculus GN=Dpp8 PE=1 SV=1;; (*TAIR) AT5G24260.1 (e_value=9e-60) | Symbols: | prolyl oligopeptidase family protein | chr5:8234865-8237810 REVERSE LENGTH=746;; (*ITAG) Solyc03g083330.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:46702262-46708474 transcript_region:SL2.40ch03:46702262..46708474+ go_terms:GO:0008239 functional_description:"Dipeptidyl peptidase IV-like protein (AHRD V1 **** Q9FNF6_ARATH); contains Interpro domain(s) IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal "; GO:0008239 NbS00002765g0032.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|0|0|2|0|167; (*SWP) sp|Q8BVG4|DPP9_MOUSE (e_value=5e-28) Dipeptidyl peptidase 9 OS=Mus musculus GN=Dpp9 PE=2 SV=2;; (*TAIR) AT5G24260.1 (e_value=6e-59) | Symbols: | prolyl oligopeptidase family protein | chr5:8234865-8237810 REVERSE LENGTH=746;; (*ITAG) Solyc03g083330.2.1 (e_value=6e-71) genomic_reference:SL2.40ch03 gene_region:46702262-46708474 transcript_region:SL2.40ch03:46702262..46708474+ go_terms:GO:0008239 functional_description:"Dipeptidyl peptidase IV-like protein (AHRD V1 **** Q9FNF6_ARATH); contains Interpro domain(s) IPR002469 Peptidase S9B, dipeptidylpeptidase IV N-terminal "; GO:0008239 NbS00027519g0002.1 protein AED:0.40 eAED:0.61 QI:0|0.33|0.25|1|1|1|4|0|84; (*TAIR) AT1G64590.1 (e_value=4e-19) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:23993592-23995200 FORWARD LENGTH=334;; (*ITAG) Solyc08g082870.2.1 (e_value=2e-19) genomic_reference:SL2.40ch08 gene_region:62700442-62703684 transcript_region:SL2.40ch08:62700442..62703684+ go_terms:GO:0046983 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_HUMAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00012161g0011.1 protein AED:0.01 eAED:0.01 QI:75|1|1|1|1|1|2|239|512; (*SWP) sp|O04161|AMT12_SOLLC (e_value=0.0) Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1;; (*TAIR) AT1G64780.1 (e_value=0.0) | Symbols: ATAMT1;2, AMT1;2 | ammonium transporter 1;2 | chr1:24061021-24062565 REVERSE LENGTH=514;; (*ITAG) Solyc04g050440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46379169-46382142 transcript_region:SL2.40ch04:46379169..46382142- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9IPE2_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00012161g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|440; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=4e-61) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT3G09570.1 (e_value=2e-145) | Symbols: | Lung seven transmembrane receptor family protein | chr3:2940524-2941843 FORWARD LENGTH=439;; (*ITAG) Solyc04g050260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:45502931-45504304 transcript_region:SL2.40ch04:45502931..45504304+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00012161g0002.1 protein AED:0.44 eAED:0.53 QI:0|0|0|1|1|1|2|0|197; (*ITAG) Solyc04g050310.2.1 (e_value=3e-29) genomic_reference:SL2.40ch04 gene_region:45704048-45704742 transcript_region:SL2.40ch04:45704048..45704742- functional_description:"Unknown Protein (AHRD V1)"; NbS00037713g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|648; (*SWP) sp|B2HIN2|FAA26_MYCMM (e_value=1e-51) Long-chain-fatty-acid--AMP ligase FadD26 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD26 PE=3 SV=1;; (*ITAG) Solyc04g080480.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:62240602-62242539 transcript_region:SL2.40ch04:62240602..62242539+ go_terms:GO:0008152 functional_description:"AMP-dependent synthetase and ligase (AHRD V1 **-- D6ZEF9_SEGRD); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00037713g0003.1 protein AED:0.42 eAED:0.57 QI:0|0|0|1|1|1|3|0|86; (*TAIR) AT1G75230.2 (e_value=4e-32) | Symbols: | DNA glycosylase superfamily protein | chr1:28234444-28235628 FORWARD LENGTH=394;; (*ITAG) Solyc04g080470.2.1 (e_value=3e-37) genomic_reference:SL2.40ch04 gene_region:62236180-62240090 transcript_region:SL2.40ch04:62236180..62240090+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase 1 (AHRD V1 ***- B6U6Y8_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbC25923596g0003.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|0.8|0.75|0.6|5|0|222; (*SWP) sp|Q9FM10|SWET5_ARATH (e_value=2e-99) Bidirectional sugar transporter SWEET5 OS=Arabidopsis thaliana GN=SWEET5 PE=2 SV=2;; (*TAIR) AT5G62850.1 (e_value=2e-100) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc06g071400.2.1 (e_value=9e-140) genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00024411g0009.1 protein AED:0.17 eAED:0.17 QI:220|1|1|1|1|1|3|140|253; (*SWP) sp|P17514|CHIQ_TOBAC (e_value=2e-172) Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT3G12500.1 (e_value=6e-102) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g082930.2.1 (e_value=3e-141) genomic_reference:SL2.40ch02 gene_region:41132090-41133663 transcript_region:SL2.40ch02:41132090..41133663+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00026825g0003.1 protein AED:0.12 eAED:0.14 QI:0|0.5|0.33|1|1|1|3|0|541; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=5e-59) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50120.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc02g093020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48547605-48549746 transcript_region:SL2.40ch02:48547605..48549746- functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00006390g0003.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|183; (*SWP) sp|Q9LIG0|Y3136_ARATH (e_value=4e-27) Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1;; (*TAIR) AT3G21360.1 (e_value=3e-28) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330;; (*ITAG) Solyc05g009960.2.1 (e_value=2e-68) genomic_reference:SL2.40ch05 gene_region:4170427-4173704 transcript_region:SL2.40ch05:4170427..4173704+ go_terms:GO:0055114 functional_description:"Taurine catabolism dioxygenase TauD/TfdA (AHRD V1 ***- B2J0Y8_NOSP7); contains Interpro domain(s) IPR003819 Taurine catabolism dioxygenase TauD/TfdA "; GO:0055114 NbS00009372g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|103 NbS00009372g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|80; (*ITAG) Solyc11g063450.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46685086-46685349 transcript_region:SL2.40ch11:46685086..46685349- go_terms:GO:0008033 functional_description:"tRNA dimethylallyltransferase (AHRD V1 ***- C6HGS0_AJECH); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0008033 NbS00009372g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.33|1|1|3|0|143; (*SWP) sp|Q8W453|DIR1_ARATH (e_value=2e-16) Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1;; (*TAIR) AT5G48485.1 (e_value=1e-17) | Symbols: DIR1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:19646317-19646625 REVERSE LENGTH=102;; (*ITAG) Solyc01g109390.2.1 (e_value=1e-40) genomic_reference:SL2.40ch01 gene_region:88122728-88123471 transcript_region:SL2.40ch01:88122728..88123471+ go_terms:GO:0008289,GO:0005319 functional_description:"PVR3-like protein (AHRD V1 ***- B6TVY8_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289,GO:0005319 NbS00015505g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.88|0.7|1|0.88|0.8|10|0|710; (*SWP) sp|O82802|SIR1_TOBAC (e_value=0.0) Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum GN=SIR1 PE=1 SV=1;; (*TAIR) AT5G04590.1 (e_value=0.0) | Symbols: SIR | sulfite reductase | chr5:1319404-1322298 FORWARD LENGTH=642;; (*ITAG) Solyc11g065620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48223149-48227503 transcript_region:SL2.40ch11:48223149..48227503+ go_terms:GO:0016002,GO:0005507 functional_description:"Sulfite reductase (AHRD V1 **** O82802_TOBAC); contains Interpro domain(s) IPR011787 Sulphite reductase, ferredoxin dependent "; GO:0016002,GO:0005507 NbS00015505g0005.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|64 NbS00035561g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.92|0.85|0.92|0.76|0.78|14|365|764; (*SWP) sp|Q54DU5|Y2028_DICDI (e_value=3e-11) von Willebrand factor A domain-containing protein DDB_G0292028 OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1;; (*TAIR) AT1G19110.1 (e_value=0.0) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc03g122270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64196840-64202987 transcript_region:SL2.40ch03:64196840..64202987- functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 ***- Q1YZ74_PHOPR); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00053672g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|497; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-131) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20860.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc02g070060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34479260-34480840 transcript_region:SL2.40ch02:34479260..34480840- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00053672g0007.1 protein AED:0.08 eAED:0.08 QI:390|1|1|1|0.66|0.71|7|315|236; (*SWP) sp|Q2LAM0|FA2H_RAT (e_value=3e-58) Fatty acid 2-hydroxylase OS=Rattus norvegicus GN=Fa2h PE=1 SV=2;; (*TAIR) AT2G34770.1 (e_value=1e-135) | Symbols: FAH1, ATFAH1 | fatty acid hydroxylase 1 | chr2:14666776-14668061 FORWARD LENGTH=237;; (*ITAG) Solyc02g022910.2.1 (e_value=2e-116) genomic_reference:SL2.40ch02 gene_region:15104222-15107083 transcript_region:SL2.40ch02:15104222..15107083+ go_terms:GO:0005515,GO:0080132 functional_description:"Fatty acid hydroxylase family protein expressed (AHRD V1 **** Q9AY73_ORYSJ); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0005515,GO:0080132 NbS00053672g0006.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|1|1|2|0|158; (*TAIR) AT4G20880.1 (e_value=1e-13) | Symbols: | ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) | chr4:11179389-11180606 REVERSE LENGTH=405;; (*ITAG) Solyc02g022920.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15128281-15129522 transcript_region:SL2.40ch02:15128281..15129522+ functional_description:"Ethylene-responsive nuclear protein (AHRD V1 ***- Q38MV1_SOLLC)"; NbS00002496g0001.1 protein AED:0.00 eAED:0.00 QI:251|1|1|1|0|0|4|680|229; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=4e-37) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-38) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g079810.1.1 (e_value=9e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61715006-61716433 transcript_region:SL2.40ch04:61715006..61716433- go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 13 (AHRD V1 ***- FBL13_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00002496g0032.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|0.5|2|0|209; (*SWP) sp|P82278|RR9_SPIOL (e_value=2e-83) 30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1;; (*TAIR) AT1G74970.1 (e_value=6e-83) | Symbols: RPS9, TWN3 | ribosomal protein S9 | chr1:28157761-28159202 REVERSE LENGTH=208;; (*ITAG) Solyc04g079790.2.1 (e_value=3e-110) genomic_reference:SL2.40ch04 gene_region:61710390-61712995 transcript_region:SL2.40ch04:61710390..61712995- go_terms:GO:0005840 functional_description:"30S ribosomal protein S9 (AHRD V1 *-*- B6SZ34_MAIZE); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0005840 NbS00002496g0034.1 protein AED:0.15 eAED:0.15 QI:906|0.83|0.85|1|0.66|0.57|7|414|358; (*SWP) sp|Q84RR2|ARI2_ARATH (e_value=1e-161) Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1;; (*TAIR) AT2G16090.1 (e_value=9e-163) | Symbols: ARI2, ATARI2 | RING/U-box superfamily protein | chr2:6987367-6989822 REVERSE LENGTH=593;; (*ITAG) Solyc04g079780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61707011-61709902 transcript_region:SL2.40ch04:61707011..61709902- go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00002496g0006.1 protein AED:0.17 eAED:0.17 QI:0|1|0.83|1|0.8|0.66|6|513|356; (*TAIR) AT5G42660.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr5:17103062-17105785 REVERSE LENGTH=463;; (*ITAG) Solyc04g079770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61701807-61705777 transcript_region:SL2.40ch04:61701807..61705777- go_terms:GO:0006810 functional_description:"Glycosyl transferase family 2 (AHRD V1 *--- D3EJR5_GEOS4); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; GO:0006810 NbS00002496g0036.1 protein AED:0.25 eAED:0.27 QI:163|0.66|0.25|1|0.33|0.5|4|0|255; (*SWP) sp|P0C7R2|LIPBL_ARATH (e_value=1e-112) Putative lipoyltransferase-like protein, chloroplastic OS=Arabidopsis thaliana GN=At1g47578 PE=3 SV=1;; (*TAIR) AT1G47578.1 (e_value=8e-114) | Symbols: | Biotin/lipoate A/B protein ligase family | chr1:17484365-17485470 FORWARD LENGTH=280;; (*ITAG) Solyc04g079750.2.1 (e_value=1e-123) genomic_reference:SL2.40ch04 gene_region:61696179-61698097 transcript_region:SL2.40ch04:61696179..61698097- go_terms:GO:0016979 functional_description:"Octanoyltransferase (AHRD V1 ***- C7QW96_CYAP0); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0016979 NbS00002496g0005.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|181; (*ITAG) Solyc04g079770.2.1 (e_value=3e-30) genomic_reference:SL2.40ch04 gene_region:61701807-61705777 transcript_region:SL2.40ch04:61701807..61705777- go_terms:GO:0006810 functional_description:"Glycosyl transferase family 2 (AHRD V1 *--- D3EJR5_GEOS4); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; GO:0006810 NbS00002496g0029.1 protein AED:0.08 eAED:0.12 QI:0|1|0.5|1|1|1|4|0|331; (*TAIR) AT4G19390.1 (e_value=4e-35) | Symbols: | Uncharacterised protein family (UPF0114) | chr4:10574903-10576355 REVERSE LENGTH=273;; (*ITAG) Solyc04g079760.2.1 (e_value=1e-139) genomic_reference:SL2.40ch04 gene_region:61699526-61701530 transcript_region:SL2.40ch04:61699526..61701530+ functional_description:"Os07g0656700 protein (Fragment) (AHRD V1 *--- Q0D403_ORYSJ); contains Interpro domain(s) IPR005134 Uncharacterised protein family UPF0114 "; NbS00002496g0039.1 protein AED:0.16 eAED:0.17 QI:56|0.5|0.14|1|0.16|0.28|7|0|359; (*TAIR) AT1G48460.1 (e_value=2e-111) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911469-17913149 FORWARD LENGTH=340;; (*ITAG) Solyc04g079740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61693248-61696082 transcript_region:SL2.40ch04:61693248..61696082+ functional_description:"Os01g0704200 protein (Fragment) (AHRD V1 *-*- Q0JK10_ORYSJ)"; NbS00003501g0001.1 protein AED:0.01 eAED:0.01 QI:218|1|1|1|0.5|0.6|5|124|129; (*SWP) sp|P87173|LSM1_SCHPO (e_value=5e-24) U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=2 SV=1;; (*TAIR) AT3G14080.2 (e_value=2e-58) | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128;; (*ITAG) Solyc06g062980.2.1 (e_value=7e-58) genomic_reference:SL2.40ch06 gene_region:36140594-36143279 transcript_region:SL2.40ch06:36140594..36143279+ go_terms:GO:0005515,GO:0000339 functional_description:"U6 snRNA-associated Sm-like protein LSm1 (AHRD V1 *-*- C1C4Y5_RANCA); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515,GO:0000339 NbS00039735g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|113 NbS00027828g0001.1 protein AED:0.27 eAED:0.29 QI:0|1|0.5|1|1|1|4|0|680; (*SWP) sp|Q9SIW1|BLH7_ARATH (e_value=6e-124) BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1;; (*TAIR) AT2G16400.1 (e_value=4e-125) | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:7101490-7103200 REVERSE LENGTH=482;; (*ITAG) Solyc01g109980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88557367-88561809 transcript_region:SL2.40ch01:88557367..88561809- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 6 (AHRD V1 *--- BLH6_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00027828g0007.1 protein AED:0.00 eAED:0.00 QI:0|1|0.85|1|0.66|0.57|7|297|977; (*SWP) sp|P41410|RAD54_SCHPO (e_value=4e-34) DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp54 PE=1 SV=2;; (*TAIR) AT2G16390.1 (e_value=0.0) | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:7097638-7101182 FORWARD LENGTH=888;; (*ITAG) Solyc01g109970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88549263-88557040 transcript_region:SL2.40ch01:88549263..88557040+ go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2UQK2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00009256g0004.1 protein AED:0.01 eAED:0.01 QI:0|0.5|0.33|1|1|0.66|3|0|491; (*SWP) sp|A2WW87|GAM1_ORYSI (e_value=5e-66) Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1;; (*TAIR) AT2G32460.1 (e_value=3e-70) | Symbols: MYB101, ATMYB101, ATM1 | myb domain protein 101 | chr2:13782419-13784363 REVERSE LENGTH=490;; (*ITAG) Solyc07g052300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58120635-58123894 transcript_region:SL2.40ch07:58120635..58123894+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00026429g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|88; (*ITAG) Solyc12g088840.1.1 (e_value=5e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:62498164-62498427 transcript_region:SL2.40ch12:62498164..62498427+ go_terms:GO:0005509 functional_description:"Os07g0619200 protein (Fragment) (AHRD V1 ***- Q0D4L7_ORYSJ); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00020649g0003.1 protein AED:0.03 eAED:0.03 QI:46|1|1|1|1|1|3|317|655; (*SWP) sp|P09114|ILVB2_TOBAC (e_value=0.0) Acetolactate synthase 2, chloroplastic OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1;; (*TAIR) AT3G48560.1 (e_value=0.0) | Symbols: CSR1, ALS, AHAS, TZP5, IMR1 | chlorsulfuron/imidazolinone resistant 1 | chr3:18001530-18003542 REVERSE LENGTH=670;; (*ITAG) Solyc03g044330.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:12823169-12825148 transcript_region:SL2.40ch03:12823169..12825148- go_terms:GO:0003984 functional_description:"Acetolactate synthase (AHRD V1 **** D7RPJ7_SOLTU); contains Interpro domain(s) IPR012846 Acetolactate synthase, large subunit, biosynthetic "; GO:0003984 NbS00010991g0005.1 protein AED:0.47 eAED:0.56 QI:67|0.25|0.2|0.8|1|1|5|0|163; (*SWP) sp|Q43472|GRP_HORVU (e_value=1e-24) Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1;; (*TAIR) AT3G26420.1 (e_value=5e-37) | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:9671953-9673055 FORWARD LENGTH=245;; (*ITAG) Solyc10g047130.1.1 (e_value=4e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:35339896-35342026 transcript_region:SL2.40ch10:35339896..35342026+ go_terms:GO:0003690,GO:0043047 functional_description:"RNA-binding protein RZ-1 (AHRD V1 **** D0V0M9_CAPAN); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003690,GO:0043047 NbS00010991g0008.1 protein AED:0.56 eAED:0.66 QI:20|0.28|0|0.87|0.42|0.5|8|0|208 NbS00004532g0001.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|2|0|422; (*SWP) sp|Q9SN22|SCL32_ARATH (e_value=7e-113) Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1;; (*TAIR) AT3G49950.1 (e_value=5e-114) | Symbols: | GRAS family transcription factor | chr3:18522570-18523802 FORWARD LENGTH=410;; (*ITAG) Solyc07g052960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58690695-58691984 transcript_region:SL2.40ch07:58690695..58691984+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9MXU3_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00032265g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.66|0.88|1|1|9|473|484; (*TAIR) AT4G19160.2 (e_value=2e-153) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:10477772-10479947 FORWARD LENGTH=453;; (*ITAG) Solyc08g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00008346g0004.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|238; (*ITAG) Solyc12g094530.1.1 (e_value=9e-79) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:63082176-63082880 transcript_region:SL2.40ch12:63082176..63082880- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00008346g0016.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|286|418; (*TAIR) AT1G76250.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr1:28606561-28608942 REVERSE LENGTH=434;; (*ITAG) Solyc12g094550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63087125-63089784 transcript_region:SL2.40ch12:63087125..63089784- functional_description:"AT1G76250-like protein (Fragment) (AHRD V1 *-*- D6PP03_9BRAS)"; NbS00008346g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|146; (*ITAG) Solyc01g094420.2.1 (e_value=4e-37) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00008346g0015.1 protein AED:0.36 eAED:0.41 QI:100|0.5|0.61|0.92|0.41|0.46|13|0|398; (*TAIR) AT1G42430.1 (e_value=2e-133) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:15891512-15894322 FORWARD LENGTH=426;; (*ITAG) Solyc04g082290.2.1 (e_value=2e-140) genomic_reference:SL2.40ch04 gene_region:63599630-63604934 transcript_region:SL2.40ch04:63599630..63604934- functional_description:"Os03g0133300 protein (Fragment) (AHRD V1 ***- Q0DVF0_ORYSJ)"; NbS00008346g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|213; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=6e-22) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT4G13870.1 (e_value=2e-23) | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=285;; (*ITAG) Solyc12g094540.1.1 (e_value=1e-105) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:63086062-63086676 transcript_region:SL2.40ch12:63086062..63086676+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- Q0HXZ2_SHESR); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00014002g0120.1 protein AED:0.05 eAED:0.05 QI:544|0.66|0.75|1|1|1|4|278|346 NbS00014002g0121.1 protein AED:0.33 eAED:0.42 QI:60|0.5|0.33|1|0|0.33|3|0|141 NbS00014002g0123.1 protein AED:0.00 eAED:0.00 QI:114|1|1|1|1|1|2|567|186 NbS00014002g0122.1 protein AED:0.03 eAED:0.03 QI:151|1|1|1|1|1|4|1649|162 NbS00014002g0127.1 protein AED:0.73 eAED:0.77 QI:0|0|0|0.8|1|1|5|0|73 NbS00032080g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|394; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=5e-42) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT2G39710.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:16562051-16563379 REVERSE LENGTH=442;; (*ITAG) Solyc09g011040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4382351-4383640 transcript_region:SL2.40ch09:4382351..4383640+ go_terms:GO:0008233 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0008233 NbS00022220g0006.1 protein AED:0.29 eAED:0.33 QI:244|0.4|0.63|1|0.3|0.45|11|328|385; (*SWP) sp|P51566|AFC1_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2;; (*TAIR) AT3G53570.4 (e_value=0.0) | Symbols: AFC1, AME2, FC1 | FUS3-complementing gene 1 | chr3:19861449-19864125 REVERSE LENGTH=467;; (*ITAG) Solyc05g013770.2.1 (e_value=1e-162) genomic_reference:SL2.40ch05 gene_region:7077909-7082147 transcript_region:SL2.40ch05:7077909..7082147- go_terms:GO:0003713,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0003713,GO:0004674 NbS00034768g0001.1 protein AED:0.64 eAED:0.74 QI:0|0|0|0.66|1|1|3|0|93; (*SWP) sp|Q9XGX7|TIM9_ORYSJ (e_value=4e-43) Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2;; (*TAIR) AT3G46560.1 (e_value=2e-37) | Symbols: TIM9, emb2474 | Tim10/DDP family zinc finger protein | chr3:17138632-17139301 FORWARD LENGTH=93;; (*ITAG) Solyc10g086510.1.1 (e_value=2e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64631079-64633156 transcript_region:SL2.40ch10:64631079..64633156+ go_terms:GO:0042719 functional_description:"Mitochondrial import inner membrane translocase subunit tim9 (AHRD V1 ***- A6MZE3_ORYSI); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0042719 NbS00027145g0004.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|0.33|1|1|3|395|96; (*ITAG) Solyc03g116330.2.1 (e_value=6e-15) genomic_reference:SL2.40ch03 gene_region:59867711-59873429 transcript_region:SL2.40ch03:59867711..59873429+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q014A6_OSTTA)"; NbS00027145g0006.1 protein AED:0.33 eAED:0.33 QI:266|1|0.8|1|0.5|0.6|5|0|240; (*SWP) sp|Q9SN74|BH047_ARATH (e_value=1e-40) Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1;; (*TAIR) AT3G47640.3 (e_value=1e-41) | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:17568035-17569101 FORWARD LENGTH=240;; (*ITAG) Solyc03g116340.2.1 (e_value=2e-138) genomic_reference:SL2.40ch03 gene_region:59874395-59877786 transcript_region:SL2.40ch03:59874395..59877786+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00020061g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|0|0.5|2|449|468; (*TAIR) AT3G20170.1 (e_value=2e-138) | Symbols: | ARM repeat superfamily protein | chr3:7041780-7043207 FORWARD LENGTH=475;; (*ITAG) Solyc12g015650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5649944-5651353 transcript_region:SL2.40ch12:5649944..5651353+ go_terms:GO:0005488 functional_description:"Armadillo repeat containing 4 (AHRD V1 **-- A8K906_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00020061g0017.1 protein AED:0.30 eAED:0.31 QI:0|0.4|0.16|0.83|0.8|0.66|6|0|484; (*SWP) sp|Q6P6Q6|MTER1_RAT (e_value=4e-12) mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1;; (*TAIR) AT5G55580.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:22515601-22517408 FORWARD LENGTH=496;; (*ITAG) Solyc12g015640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5642779-5645448 transcript_region:SL2.40ch12:5642779..5645448+ functional_description:"Mitochondrial transcription termination factor (Fragment) (AHRD V1 *--- C6FB12_PSEMZ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00020061g0018.1 protein AED:0.97 eAED:1.00 QI:0|0|0|0.33|0.5|0.33|3|0|76 NbS00020061g0015.1 protein AED:0.10 eAED:0.06 QI:66|1|0.8|1|1|0.8|5|1349|305; (*SWP) sp|Q9SZY4|PTR27_ARATH (e_value=8e-138) Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1;; (*TAIR) AT2G26690.1 (e_value=6e-139) | Symbols: | Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577;; (*ITAG) Solyc01g096880.2.1 (e_value=1e-153) genomic_reference:SL2.40ch01 gene_region:79634561-79638218 transcript_region:SL2.40ch01:79634561..79638218- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00020061g0016.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|0.66|1|1|3|0|75; (*TAIR) AT4G05030.1 (e_value=4e-19) | Symbols: | Copper transport protein family | chr4:2576790-2577974 REVERSE LENGTH=110; NbS00007163g0006.1 protein AED:0.28 eAED:0.34 QI:0|0.55|0.5|1|0.66|0.7|10|0|483; (*SWP) sp|Q5M868|GBA2_RAT (e_value=1e-77) Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2;; (*TAIR) AT5G49900.1 (e_value=0.0) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr5:20297235-20302019 REVERSE LENGTH=957;; (*ITAG) Solyc01g103230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83638757-83653587 transcript_region:SL2.40ch01:83638757..83653587+ go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9SS77_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00047339g0005.1 protein AED:0.36 eAED:0.37 QI:418|1|0.75|1|1|1|4|0|144; (*TAIR) AT5G02020.1 (e_value=6e-34) | Symbols: SIS | Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). | chr5:386557-387921 REVERSE LENGTH=149;; (*ITAG) Solyc09g011470.2.1 (e_value=3e-59) genomic_reference:SL2.40ch09 gene_region:4793545-4796953 transcript_region:SL2.40ch09:4793545..4796953+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004569g0024.1 protein AED:0.10 eAED:0.10 QI:69|0.90|0.83|1|1|1|12|268|572; (*SWP) sp|O22494|GSHB_SOLLC (e_value=0.0) Glutathione synthetase, chloroplastic OS=Solanum lycopersicum GN=GSH2 PE=2 SV=1;; (*TAIR) AT5G27380.1 (e_value=0.0) | Symbols: GSH2, GSHB | glutathione synthetase 2 | chr5:9668211-9670912 REVERSE LENGTH=539;; (*ITAG) Solyc01g098610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80838433-80843744 transcript_region:SL2.40ch01:80838433..80843744- go_terms:GO:0004363 functional_description:"Glutathione synthetase (AHRD V1 **** Q6F4I7_ZINEL); contains Interpro domain(s) IPR005615 Glutathione synthase, eukaryotic "; GO:0004363 NbS00004569g0030.1 protein AED:0.16 eAED:0.16 QI:0|0.72|0.66|0.91|0.72|0.83|12|0|296; (*TAIR) AT5G27395.2 (e_value=4e-112) | Symbols: | Mitochondrial inner membrane translocase complex, subunit Tim44-related protein | chr5:9671845-9674085 REVERSE LENGTH=296;; (*ITAG) Solyc01g098630.2.1 (e_value=2e-169) genomic_reference:SL2.40ch01 gene_region:80846096-80853178 transcript_region:SL2.40ch01:80846096..80853178- go_terms:GO:0005744 functional_description:"Import inner membrane translocase subunit Tim44 (AHRD V1 *--- B3Q8B6_RHOPT); contains Interpro domain(s) IPR007379 Mitochondrial inner membrane translocase complex, subunit Tim44-related "; GO:0005744 NbS00004569g0034.1 protein AED:0.36 eAED:0.36 QI:0|0.25|0.2|0.8|0|0.4|5|0|168; (*ITAG) Solyc03g013260.1.1 (e_value=5e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:3986902-3988293 transcript_region:SL2.40ch03:3986902..3988293+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6U4N2_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00004569g0011.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|1|1|3|0|346; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=3e-22) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT3G05650.1 (e_value=1e-26) | Symbols: AtRLP32, RLP32 | receptor like protein 32 | chr3:1645884-1648490 REVERSE LENGTH=868;; (*ITAG) Solyc01g098690.2.1 (e_value=9e-127) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00004569g0033.1 protein AED:0.41 eAED:0.47 QI:0|0.33|0|0.75|0.66|0.75|4|0|157; (*ITAG) Solyc10g049480.1.1 (e_value=5e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00004569g0037.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|0|0.5|2|0|113; (*ITAG) Solyc01g098680.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:80867549-80870570 transcript_region:SL2.40ch01:80867549..80870570+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004569g0028.1 protein AED:0.18 eAED:0.18 QI:77|1|1|1|1|1|2|518|290; (*SWP) sp|Q99288|DET1_YEAST (e_value=1e-24) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=2e-92) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc01g098590.2.1 (e_value=2e-164) genomic_reference:SL2.40ch01 gene_region:80831727-80833048 transcript_region:SL2.40ch01:80831727..80833048+ go_terms:GO:0008152 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00004569g0019.1 protein AED:0.17 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|273; (*ITAG) Solyc01g098570.2.1 (e_value=3e-72) genomic_reference:SL2.40ch01 gene_region:80817213-80818517 transcript_region:SL2.40ch01:80817213..80818517+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004569g0029.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0|1|1|1|3|0|311; (*SWP) sp|Q99288|DET1_YEAST (e_value=4e-41) Putative phosphoglycerate mutase DET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DET1 PE=1 SV=1;; (*TAIR) AT3G05170.1 (e_value=3e-138) | Symbols: | Phosphoglycerate mutase family protein | chr3:1466738-1468219 FORWARD LENGTH=316;; (*ITAG) Solyc01g098580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80825126-80828408 transcript_region:SL2.40ch01:80825126..80828408+ go_terms:GO:0003993 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C1DZH2_9CHLO); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003993 NbS00004569g0038.1 protein AED:0.35 eAED:0.35 QI:566|1|1|1|0.66|0.5|4|246|170; (*TAIR) AT2G32580.1 (e_value=1e-38) | Symbols: | Protein of unknown function (DUF1068) | chr2:13827849-13829135 FORWARD LENGTH=183;; (*ITAG) Solyc01g098600.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:80834334-80837989 transcript_region:SL2.40ch01:80834334..80837989+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00004569g0035.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|349; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=4e-50) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT5G40170.1 (e_value=2e-62) | Symbols: AtRLP54, RLP54 | receptor like protein 54 | chr5:16065179-16067557 REVERSE LENGTH=792;; (*ITAG) Solyc01g098690.2.1 (e_value=3e-153) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00004569g0031.1 protein AED:0.08 eAED:0.09 QI:8|0|0|1|0|0|2|0|287; (*ITAG) Solyc01g098620.2.1 (e_value=6e-84) genomic_reference:SL2.40ch01 gene_region:80844773-80845541 transcript_region:SL2.40ch01:80844773..80845541- functional_description:"Unknown Protein (AHRD V1)"; NbS00010482g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|119; (*SWP) sp|P11432|ELI_PEA (e_value=1e-39) Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G22840.1 (e_value=3e-43) | Symbols: ELIP1, ELIP | Chlorophyll A-B binding family protein | chr3:8084628-8085445 REVERSE LENGTH=195;; (*ITAG) Solyc09g082700.2.1 (e_value=8e-48) genomic_reference:SL2.40ch09 gene_region:63810388-63811862 transcript_region:SL2.40ch09:63810388..63811862- go_terms:GO:0016168 functional_description:"Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)"; GO:0016168 NbS00010482g0006.1 protein AED:0.15 eAED:0.15 QI:64|0.5|0.72|1|0.2|0.54|11|84|398; (*SWP) sp|Q42456|ASPR1_ORYSJ (e_value=4e-107) Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=2e-108) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc03g005280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:161169-164845 transcript_region:SL2.40ch03:161169..164845- go_terms:GO:0004190 functional_description:"Aspartic proteinase 2 (AHRD V1 **-* Q948P0_SOYBN); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00036404g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.88|0.8|1|1|1|10|277|380; (*SWP) sp|A6H213|SURE_FLAPJ (e_value=7e-23) 5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1;; (*TAIR) AT1G72880.1 (e_value=4e-144) | Symbols: | Survival protein SurE-like phosphatase/nucleotidase | chr1:27423678-27425928 REVERSE LENGTH=385;; (*ITAG) Solyc03g121730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63857885-63862728 transcript_region:SL2.40ch03:63857885..63862728+ go_terms:GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 *-*- Q1JYK3_DESAC); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0003993 NbS00053840g0020.1 protein AED:0.21 eAED:0.21 QI:113|0.81|0.76|1|0.68|0.64|17|214|838; (*TAIR) AT3G49400.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18319249-18324373 REVERSE LENGTH=892;; (*ITAG) Solyc06g073680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41848227-41854416 transcript_region:SL2.40ch06:41848227..41854416- go_terms:GO:0000166 functional_description:"Notchless protein homolog 1 (AHRD V1 *--- NLE1_PONAB); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00053840g0018.1 protein AED:0.12 eAED:0.12 QI:148|1|1|1|1|1|5|630|112; (*SWP) sp|O49884|RL30_LUPLU (e_value=8e-76) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=2e-71) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc11g071490.1.1 (e_value=4e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52029448-52031919 transcript_region:SL2.40ch11:52029448..52031919+ go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00053840g0005.1 protein AED:0.15 eAED:0.16 QI:115|0.5|0.66|1|0|0|3|288|515; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=0.0) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=0.0) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbS00053840g0021.1 protein AED:0.44 eAED:0.47 QI:442|0|0.66|1|1|1|3|4|73 NbS00053840g0022.1 protein AED:0.41 eAED:0.47 QI:0|1|0|1|1|0.5|2|0|335; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-19) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08520.1 (e_value=4e-56) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:2755470-2757741 REVERSE LENGTH=298;; (*ITAG) Solyc11g071500.1.1 (e_value=1e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00015181g0003.1 protein AED:0.31 eAED:0.31 QI:258|1|0.71|1|0.76|0.78|14|0|516; (*SWP) sp|Q8VYB5|AMSH1_ARATH (e_value=0.0) AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana GN=AMSH1 PE=2 SV=1;; (*TAIR) AT1G48790.1 (e_value=0.0) | Symbols: AMSH1 | associated molecule with the SH3 domain of STAM 1 | chr1:18043925-18047427 REVERSE LENGTH=507;; (*ITAG) Solyc03g119330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62024109-62031646 transcript_region:SL2.40ch03:62024109..62031646- functional_description:"26S proteasome regulatory subunit (AHRD V1 *--- A7EKH5_SCLS1); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00007226g0014.1 protein AED:0.10 eAED:0.10 QI:0|0.6|0.66|1|0|0.16|6|263|472; (*SWP) sp|Q9SX98|LHTL8_ARATH (e_value=8e-160) Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1;; (*TAIR) AT1G47670.1 (e_value=6e-161) | Symbols: | Transmembrane amino acid transporter family protein | chr1:17536834-17539486 REVERSE LENGTH=519;; (*ITAG) Solyc04g082220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63558916-63561283 transcript_region:SL2.40ch04:63558916..63561283- go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00007226g0009.1 protein AED:0.30 eAED:0.35 QI:0|0.33|0|1|0.33|0.5|4|0|161 NbS00007226g0010.1 protein AED:0.09 eAED:0.09 QI:311|1|1|1|1|1|2|260|106; (*TAIR) AT1G20460.1 (e_value=4e-25) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD LENGTH=106;; (*ITAG) Solyc04g082210.2.1 (e_value=2e-28) genomic_reference:SL2.40ch04 gene_region:63556731-63558890 transcript_region:SL2.40ch04:63556731..63558890+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007914g0005.1 protein AED:0.05 eAED:0.05 QI:128|1|0.5|1|1|1|4|0|407; (*SWP) sp|Q9C5M8|PLY18_ARATH (e_value=0.0) Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2;; (*TAIR) AT4G24780.2 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:12770631-12772227 REVERSE LENGTH=408;; (*ITAG) Solyc03g111690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56396337-56398488 transcript_region:SL2.40ch03:56396337..56398488+ go_terms:GO:0016829 functional_description:"Pectate lyase (AHRD V1 **** Q2Z1Y4_PRUMU); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00013184g0012.1 protein AED:0.02 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.33|3|0|209; (*SWP) sp|Q9XGS0|TRXM_BRANA (e_value=4e-54) Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1;; (*TAIR) AT3G15360.1 (e_value=2e-53) | Symbols: ATHM4, TRX-M4, ATM4 | thioredoxin M-type 4 | chr3:5188448-5189457 FORWARD LENGTH=193;; (*ITAG) Solyc07g063190.2.1 (e_value=3e-73) genomic_reference:SL2.40ch07 gene_region:62954842-62957348 transcript_region:SL2.40ch07:62954842..62957348+ go_terms:GO:0004857,GO:0008047 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0004857,GO:0008047 NbS00013184g0008.1 protein AED:0.11 eAED:0.11 QI:131|1|1|1|0.85|1|8|372|292; (*SWP) sp|A6L9D4|KDSB_PARD8 (e_value=5e-58) 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=kdsB PE=3 SV=1;; (*TAIR) AT1G53000.1 (e_value=1e-154) | Symbols: KDSB | Nucleotide-diphospho-sugar transferases superfamily protein | chr1:19745330-19747133 REVERSE LENGTH=290;; (*ITAG) Solyc10g006980.2.1 (e_value=2e-159) genomic_reference:SL2.40ch10 gene_region:1390513-1394761 transcript_region:SL2.40ch10:1390513..1394761- go_terms:GO:0005515 functional_description:"3-deoxy-manno-octulosonate cytidylyltransferase (AHRD V1 ***- B6TZC2_MAIZE); contains Interpro domain(s) IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase "; GO:0005515 NbS00013184g0002.1 protein AED:0.11 eAED:0.11 QI:231|1|1|1|0.5|0.33|3|171|181; (*SWP) sp|Q86A88|DYL_DICDI (e_value=8e-16) Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1;; (*TAIR) AT1G23220.1 (e_value=4e-26) | Symbols: | Dynein light chain type 1 family protein | chr1:8242614-8244136 FORWARD LENGTH=129;; (*ITAG) Solyc07g063180.2.1 (e_value=6e-61) genomic_reference:SL2.40ch07 gene_region:62952764-62953538 transcript_region:SL2.40ch07:62952764..62953538- go_terms:GO:0042803 functional_description:"Cytoplasmic dynein light chain (AHRD V1 *-*- D3BU56_POLPA); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00017563g0004.1 protein AED:0.29 eAED:0.29 QI:254|1|1|1|0.75|0.6|5|244|239; (*SWP) sp|Q9SYL9|RK13_ARATH (e_value=1e-122) 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=1 SV=1;; (*TAIR) AT1G78630.1 (e_value=8e-124) | Symbols: emb1473 | Ribosomal protein L13 family protein | chr1:29575997-29577406 FORWARD LENGTH=241;; (*ITAG) Solyc12g014390.1.1 (e_value=7e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5274700-5277011 transcript_region:SL2.40ch12:5274700..5277011- go_terms:GO:0005840 functional_description:"50S ribosomal protein L13 (AHRD V1 ***- B6SVH3_MAIZE); contains Interpro domain(s) IPR005823 Ribosomal protein L13, bacterial-type "; GO:0005840 NbS00011283g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0.5|2|313|107; (*SWP) sp|Q9FNP1|PEX1_ARATH (e_value=3e-27) Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=2;; (*TAIR) AT5G08470.1 (e_value=3e-28) | Symbols: PEX1 | peroxisome 1 | chr5:2735925-2742731 FORWARD LENGTH=1130;; (*ITAG) Solyc04g057960.2.1 (e_value=2e-47) genomic_reference:SL2.40ch04 gene_region:54216450-54236433 transcript_region:SL2.40ch04:54216450..54236433- go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 1 (AHRD V1 *--- FTSH1_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00035535g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|1|1|4|214|573; (*TAIR) AT2G37730.1 (e_value=2e-134) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=3e-155) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00035535g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.81|0.75|0.91|0.63|0.66|12|0|482; (*SWP) sp|Q4V3C8|PDPK2_ARATH (e_value=0.0) 3-phosphoinositide-dependent protein kinase 2 OS=Arabidopsis thaliana GN=PDPK2 PE=1 SV=1;; (*TAIR) AT3G10540.1 (e_value=0.0) | Symbols: | 3-phosphoinositide-dependent protein kinase | chr3:3289916-3292429 FORWARD LENGTH=486;; (*ITAG) Solyc03g071750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:41544479-41549200 transcript_region:SL2.40ch03:41544479..41549200+ go_terms:GO:0006468 functional_description:"Protein kinase 3 (AHRD V1 ***- D3BKW3_POLPA); contains Interpro domain(s) IPR015746 Protein Kinase-1, 3-phosphoinositide dependent "; GO:0006468 NbS00039588g0008.1 protein AED:0.15 eAED:0.15 QI:110|0.75|0.6|1|0.75|0.8|5|0|421; (*SWP) sp|Q9C5S9|CRK6_ARATH (e_value=9e-91) Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1;; (*TAIR) AT1G70740.1 (e_value=2e-95) | Symbols: | Protein kinase superfamily protein | chr1:26673847-26675687 REVERSE LENGTH=425;; (*ITAG) Solyc03g119340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62037083-62040211 transcript_region:SL2.40ch03:62037083..62040211+ go_terms:GO:0004672 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 **** Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00039588g0009.1 protein AED:0.17 eAED:0.17 QI:356|0.85|0.75|1|0.42|0.5|8|0|215; (*TAIR) AT1G67060.1 (e_value=2e-112) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | chr1:25036729-25039123 FORWARD LENGTH=234;; (*ITAG) Solyc03g119350.1.1 (e_value=5e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62041111-62044284 transcript_region:SL2.40ch03:62041111..62044284+ functional_description:"Similarity the predicted A. niger protein contains a neutral zinc metallopeptidases (AHRD V1 **-- A2QF33_ASPNC)"; NbS00039588g0004.1 protein AED:0.31 eAED:0.31 QI:80|0.8|0.66|1|0.8|0.66|6|380|197; (*SWP) sp|Q949H0|RS7_HORVU (e_value=1e-108) 40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1;; (*TAIR) AT1G48830.2 (e_value=1e-107) | Symbols: | Ribosomal protein S7e family protein | chr1:18059854-18060935 REVERSE LENGTH=191;; (*ITAG) Solyc03g119360.2.1 (e_value=2e-126) genomic_reference:SL2.40ch03 gene_region:62044635-62047323 transcript_region:SL2.40ch03:62044635..62047323- go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S7-like protein (AHRD V1 ***- Q3HRX6_SOLTU); contains Interpro domain(s) IPR000554 Ribosomal protein S7e "; GO:0032183,GO:0003735 NbS00000660g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0.8|1|0.66|0.6|10|223|626; (*TAIR) AT4G27860.2 (e_value=1e-31) | Symbols: | vacuolar iron transporter (VIT) family protein | chr4:13873808-13876240 FORWARD LENGTH=596;; (*ITAG) Solyc09g059460.2.1 (e_value=4e-111) genomic_reference:SL2.40ch09 gene_region:50124094-50128390 transcript_region:SL2.40ch09:50124094..50128390+ functional_description:"At5g24290 (Fragment) (AHRD V1 *-*- Q45H30_ARATH); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00060067g0003.1 protein AED:0.31 eAED:0.31 QI:70|1|0.66|1|1|1|3|0|81 NbS00054586g0002.1 protein AED:0.32 eAED:0.32 QI:58|1|1|1|0.75|0.6|5|576|195; (*TAIR) AT5G02710.1 (e_value=1e-64) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0153 (InterPro:IPR005358); Has 240 Blast hits to 240 proteins in 73 species: Archae - 10; Bacteria - 110; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). | chr5:612628-613480 FORWARD LENGTH=176;; (*ITAG) Solyc09g006000.2.1 (e_value=2e-108) genomic_reference:SL2.40ch09 gene_region:679753-681517 transcript_region:SL2.40ch09:679753..681517- functional_description:"Fe-S-cluster oxidoreductase-like (AHRD V1 ***- D8LKL6_ECTSI); contains Interpro domain(s) IPR005358 Uncharacterised protein family UPF0153 "; NbS00047151g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|104; (*TAIR) AT2G47710.1 (e_value=5e-23) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc05g054270.2.1 (e_value=8e-47) genomic_reference:SL2.40ch05 gene_region:63371493-63373042 transcript_region:SL2.40ch05:63371493..63373042+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00038937g0005.1 protein AED:0.24 eAED:0.30 QI:0|1|0.5|1|1|0|2|0|213; (*SWP) sp|Q02283|HAT5_ARATH (e_value=2e-39) Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=1e-40) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc02g086930.2.1 (e_value=1e-88) genomic_reference:SL2.40ch02 gene_region:44097960-44101461 transcript_region:SL2.40ch02:44097960..44101461+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0043565 NbS00038937g0002.1 protein AED:0.10 eAED:0.18 QI:39|0|0.5|1|0|0.5|2|0|135 NbS00008447g0009.1 protein AED:0.13 eAED:0.13 QI:267|0.88|1|1|0.77|0.9|10|223|204; (*SWP) sp|Q0WTY4|VPS2B_ARATH (e_value=2e-96) Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2;; (*TAIR) AT5G44560.1 (e_value=2e-97) | Symbols: VPS2.2 | SNF7 family protein | chr5:17946081-17948222 FORWARD LENGTH=222;; (*ITAG) Solyc02g069680.2.1 (e_value=8e-121) genomic_reference:SL2.40ch02 gene_region:34096946-34101392 transcript_region:SL2.40ch02:34096946..34101392+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6TQT7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00008447g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|547; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-128) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT5G44400.1 (e_value=0.0) | Symbols: | FAD-binding Berberine family protein | chr5:17886365-17888071 REVERSE LENGTH=537;; (*ITAG) Solyc02g069690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34101607-34103250 transcript_region:SL2.40ch02:34101607..34103250- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH5_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00035551g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|207; (*ITAG) Solyc06g061200.1.1 (e_value=2e-12) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:35593437-35594348 transcript_region:SL2.40ch06:35593437..35594348- functional_description:"Glycine-rich protein TomR2 (AHRD V1 *-*- Q7XJI7_SOLLC)"; NbS00043142g0015.1 protein AED:0.18 eAED:0.18 QI:47|1|0|1|1|0.5|2|0|74; (*SWP) sp|Q62774|MYO1A_RAT (e_value=1e-15) Unconventional myosin-Ia (Fragment) OS=Rattus norvegicus GN=Myo1a PE=2 SV=1;; (*TAIR) AT5G54280.2 (e_value=4e-29) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220;; (*ITAG) Solyc07g063590.2.1 (e_value=5e-37) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00043142g0010.1 protein AED:0.13 eAED:0.24 QI:0|0.66|0.42|0.85|0.5|0.28|7|0|300; (*SWP) sp|P54697|MYOJ_DICDI (e_value=1e-32) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G54280.2 (e_value=9e-78) | Symbols: ATM2, ATMYOS1, ATM4 | myosin 2 | chr5:22039606-22045592 REVERSE LENGTH=1220;; (*ITAG) Solyc07g063590.2.1 (e_value=6e-105) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00043142g0013.1 protein AED:0.19 eAED:0.19 QI:168|1|0.66|1|0.5|0.66|3|260|98; (*ITAG) Solyc07g063580.2.1 (e_value=5e-31) genomic_reference:SL2.40ch07 gene_region:63244233-63247487 transcript_region:SL2.40ch07:63244233..63247487- functional_description:"Unknown Protein (AHRD V1)"; NbS00043142g0016.1 protein AED:0.25 eAED:0.27 QI:29|0.9|0.81|1|0.7|0.72|11|327|323; (*SWP) sp|Q2QY07|CCDA2_ORYSJ (e_value=5e-133) Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica GN=CCDA2 PE=2 SV=1;; (*TAIR) AT5G54290.1 (e_value=1e-133) | Symbols: CcdA | cytochrome c biogenesis protein family | chr5:22051097-22053923 FORWARD LENGTH=354;; (*ITAG) Solyc07g063570.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63234672-63241231 transcript_region:SL2.40ch07:63234672..63241231- go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7MU78_ARALY); contains Interpro domain(s) IPR003834 Cytochrome c assembly protein, transmembrane region "; GO:0016020 NbS00024350g0001.1 protein AED:0.04 eAED:0.04 QI:279|1|1|1|0.66|0.57|7|368|272; (*SWP) sp|O35678|MGLL_MOUSE (e_value=2e-23) Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1;; (*TAIR) AT2G39420.1 (e_value=3e-126) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:16460442-16462872 FORWARD LENGTH=317;; (*ITAG) Solyc04g010250.2.1 (e_value=1e-170) genomic_reference:SL2.40ch04 gene_region:3577656-3583500 transcript_region:SL2.40ch04:3577656..3583500+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00024350g0015.1 protein AED:0.22 eAED:0.46 QI:167|0.5|0.33|1|0|0|3|0|82; (*TAIR) AT3G55240.1 (e_value=1e-22) | Symbols: | Plant protein 1589 of unknown function | chr3:20473876-20474705 REVERSE LENGTH=95;; (*ITAG) Solyc00g280110.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20807678-20808496 transcript_region:SL2.40ch00:20807678..20808496- functional_description:"Plant-specific domain TIGR01589 family protein (AHRD V1 ***- B4FFL2_MAIZE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00024350g0002.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.66|0.66|1|1|3|0|1187; (*SWP) sp|Q921M3|SF3B3_MOUSE (e_value=0.0) Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1;; (*TAIR) AT3G55200.1 (e_value=0.0) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214;; (*ITAG) Solyc04g010260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3583577-3588628 transcript_region:SL2.40ch04:3583577..3588628- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor RSE1 (AHRD V1 ***- A8N7S1_COPC7); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515 NbS00024350g0017.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|0.5|0.33|3|0|282 NbS00004292g0013.1 protein AED:0.15 eAED:0.16 QI:11|1|0.66|1|0.4|0.5|6|0|339; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=1e-105) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=8e-107) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc08g078270.2.1 (e_value=2e-172) genomic_reference:SL2.40ch08 gene_region:59252637-59256975 transcript_region:SL2.40ch08:59252637..59256975- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00004292g0003.1 protein AED:0.39 eAED:0.39 QI:318|0.8|0.87|1|1|1|16|0|518; (*SWP) sp|Q20390|PPT1_CAEEL (e_value=3e-37) Palmitoyl-protein thioesterase 1 OS=Caenorhabditis elegans GN=ppt-1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=5e-107) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc08g078250.2.1 (e_value=2e-162) genomic_reference:SL2.40ch08 gene_region:59240307-59248781 transcript_region:SL2.40ch08:59240307..59248781+ go_terms:GO:0008474 functional_description:"Palmitoyl-protein thioesterase 1 (AHRD V1 **** B4FKB8_MAIZE); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00009465g0012.1 protein AED:0.05 eAED:0.05 QI:277|1|1|1|1|1|3|29|288; (*SWP) sp|Q9LEX0|P2A13_ARATH (e_value=6e-108) F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1;; (*TAIR) AT3G61060.2 (e_value=3e-110) | Symbols: AtPP2-A13, PP2-A13 | phloem protein 2-A13 | chr3:22603166-22604336 FORWARD LENGTH=291;; (*ITAG) Solyc01g091700.2.1 (e_value=4e-112) genomic_reference:SL2.40ch01 gene_region:77059070-77061042 transcript_region:SL2.40ch01:77059070..77061042+ go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00009465g0017.1 protein AED:0.07 eAED:0.07 QI:122|0.6|0.66|1|0.6|0.33|6|176|324; (*SWP) sp|Q8LG03|FB345_ARATH (e_value=2e-63) F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1;; (*TAIR) AT4G00755.2 (e_value=1e-64) | Symbols: | F-box family protein | chr4:325294-326787 FORWARD LENGTH=377;; (*ITAG) Solyc03g026170.2.1 (e_value=4e-150) genomic_reference:SL2.40ch03 gene_region:7957179-7960440 transcript_region:SL2.40ch03:7957179..7960440+ functional_description:"F-box family protein (AHRD V1 ***- B9IC68_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00009465g0001.1 protein AED:0.17 eAED:0.17 QI:511|0.8|0.83|1|0.6|0.33|6|689|179; (*SWP) sp|Q8L649|BB_ARATH (e_value=9e-15) E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1;; (*TAIR) AT3G63530.2 (e_value=7e-16) | Symbols: BB, BB2 | RING/U-box superfamily protein | chr3:23456407-23457787 REVERSE LENGTH=248;; (*ITAG) Solyc03g026150.2.1 (e_value=1e-99) genomic_reference:SL2.40ch03 gene_region:7939182-7943290 transcript_region:SL2.40ch03:7939182..7943290+ go_terms:GO:0004842 functional_description:"Ring-h2 finger protein (AHRD V1 *-*- C1ECT6_9CHLO); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00009465g0018.1 protein AED:0.34 eAED:0.34 QI:0|0.71|0.87|1|0.71|0.75|8|53|402; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=3e-87) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT5G62090.2 (e_value=5e-123) | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816;; (*ITAG) Solyc03g026190.2.1 (e_value=1e-159) genomic_reference:SL2.40ch03 gene_region:7965135-7970790 transcript_region:SL2.40ch03:7965135..7970790- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00002623g0006.1 protein AED:0.01 eAED:0.01 QI:54|1|0.5|1|1|1|2|248|227; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=4e-66) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT4G24660.1 (e_value=3e-67) | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein 22 | chr4:12724851-12725513 REVERSE LENGTH=220;; (*ITAG) Solyc04g014260.1.1 (e_value=2e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4560854-4561970 transcript_region:SL2.40ch04:4560854..4561970- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00059724g0001.1 protein AED:0.04 eAED:0.04 QI:68|1|1|1|0.36|0.41|12|283|531; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=0.0) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61810.1 (e_value=1e-178) | Symbols: BGLU45 | beta-glucosidase 45 | chr1:22830035-22832813 FORWARD LENGTH=520;; (*ITAG) Solyc07g063370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63074862-63078665 transcript_region:SL2.40ch07:63074862..63078665- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00035924g0001.1 protein AED:0.29 eAED:0.39 QI:0|0|0|1|1|1|3|0|360; (*SWP) sp|O49508|FB237_ARATH (e_value=1e-59) F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2 SV=1;; (*TAIR) AT4G18380.2 (e_value=8e-61) | Symbols: | F-box family protein | chr4:10157957-10159099 FORWARD LENGTH=380;; (*ITAG) Solyc08g048430.2.1 (e_value=4e-72) genomic_reference:SL2.40ch08 gene_region:39948539-39949816 transcript_region:SL2.40ch08:39948539..39949816- functional_description:"F-box family protein (AHRD V1 ***- D7MS00_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018303g0009.1 protein AED:0.26 eAED:0.26 QI:203|1|0.8|1|0.75|0.8|5|210|217; (*SWP) sp|Q9FJ17|DI197_ARATH (e_value=2e-63) Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2;; (*TAIR) AT5G49230.1 (e_value=1e-64) | Symbols: HRB1 | Drought-responsive family protein | chr5:19959048-19960422 REVERSE LENGTH=211;; (*ITAG) Solyc12g099390.1.1 (e_value=6e-123) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64896906-64901697 transcript_region:SL2.40ch12:64896906..64901697+ functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 4 (AHRD V1 ***- DI194_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; NbS00018303g0008.1 protein AED:0.27 eAED:0.27 QI:146|0.75|0.88|0.88|1|1|9|411|329; (*TAIR) AT4G16060.1 (e_value=1e-131) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:9094424-9096147 FORWARD LENGTH=289;; (*ITAG) Solyc12g099400.1.1 (e_value=3e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64903811-64906621 transcript_region:SL2.40ch12:64903811..64906621- functional_description:"Unknown Protein (AHRD V1)"; NbS00018303g0012.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|90; (*SWP) sp|O50001|PRU1_PRUAR (e_value=6e-17) Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1;; (*ITAG) Solyc09g090980.2.1 (e_value=6e-14) genomic_reference:SL2.40ch09 gene_region:65698002-65700023 transcript_region:SL2.40ch09:65698002..65700023- go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q84LA7_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00059497g0003.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|3|550|697; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc09g007810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1332643-1335760 transcript_region:SL2.40ch09:1332643..1335760- go_terms:GO:0003700,GO:0035198 functional_description:"Auxin response factor 3 (AHRD V1 **** A4L9W4_GOSHI); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0035198 NbS00004757g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|0|557; (*SWP) sp|Q8S8P5|WRK33_ARATH (e_value=4e-118) Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2;; (*TAIR) AT2G38470.1 (e_value=3e-119) | Symbols: WRKY33, ATWRKY33 | WRKY DNA-binding protein 33 | chr2:16108476-16110539 FORWARD LENGTH=519;; (*ITAG) Solyc09g014990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7395473-7398361 transcript_region:SL2.40ch09:7395473..7398361+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY-like transcription factor (AHRD V1 **** Q06B53_SOLPE); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00004757g0007.1 protein AED:0.04 eAED:0.04 QI:197|0.5|0.66|1|0.5|0.33|3|322|170; (*SWP) sp|D7LBN4|CSPLH_ARALL (e_value=2e-38) CASP-like protein ARALYDRAFT_321547 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_321547 PE=3 SV=1;; (*TAIR) AT2G38480.1 (e_value=1e-37) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16110960-16111694 REVERSE LENGTH=188;; (*ITAG) Solyc10g076300.1.1 (e_value=3e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58555375-58556718 transcript_region:SL2.40ch10:58555375..58556718- functional_description:"UPF0497 membrane protein At2g38480 (AHRD V1 ***- U497C_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00045047g0009.1 protein AED:0.33 eAED:0.35 QI:6|0|0|0.66|0.6|0.66|6|0|242 NbS00008775g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|1|0|0.66|3|583|458; (*SWP) sp|Q9SZL7|FRS9_ARATH (e_value=2e-66) Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2;; (*TAIR) AT4G38170.1 (e_value=1e-67) | Symbols: FRS9 | FAR1-related sequence 9 | chr4:17904613-17906439 FORWARD LENGTH=545;; (*ITAG) Solyc01g112320.2.1 (e_value=4e-66) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00041123g0009.1 protein AED:0.20 eAED:0.20 QI:41|1|0.83|1|0.6|0.5|6|110|382; (*TAIR) AT2G31130.1 (e_value=4e-16) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc12g010830.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3765641-3768837 transcript_region:SL2.40ch12:3765641..3768837- functional_description:"Unknown Protein (AHRD V1)"; NbS00041123g0003.1 protein AED:0.25 eAED:0.30 QI:0|0.25|0|0.8|1|1|5|0|416; (*TAIR) AT2G42560.1 (e_value=2e-14) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr2:17714813-17716821 REVERSE LENGTH=635;; (*ITAG) Solyc12g010820.1.1 (e_value=3e-66) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3763483-3765054 transcript_region:SL2.40ch12:3763483..3765054- functional_description:"Group 3 late embryogenesis abundant protein (AHRD V1 *--- Q2N1E0_PHAVU); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00010947g0001.1 protein AED:0.30 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|195; (*TAIR) AT4G23060.1 (e_value=9e-17) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g080470.2.1 (e_value=3e-38) genomic_reference:SL2.40ch08 gene_region:60928845-60932810 transcript_region:SL2.40ch08:60928845..60932810+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6STZ4_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00010947g0011.1 protein AED:0.21 eAED:0.21 QI:0|1|0.88|1|0.87|0.77|9|197|534; (*SWP) sp|Q9FZL3|MGDG_TOBAC (e_value=0.0) Probable monogalactosyldiacylglycerol synthase, chloroplastic OS=Nicotiana tabacum GN=MGD A PE=2 SV=1;; (*TAIR) AT4G31780.2 (e_value=0.0) | Symbols: MGD1, MGDA | monogalactosyl diacylglycerol synthase 1 | chr4:15374222-15376961 FORWARD LENGTH=533;; (*ITAG) Solyc08g006640.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1225695-1234599 transcript_region:SL2.40ch08:1225695..1234599- go_terms:GO:0046509 functional_description:"Processive diacylglycerol glucosyltransferase (AHRD V1 **-* C5NXP9_9BACL); contains Interpro domain(s) IPR009695 Monogalactosyldiacylglycerol synthase "; GO:0046509 NbS00010947g0007.1 protein AED:0.49 eAED:0.51 QI:0|0.5|0|0.66|0|0.33|3|0|78 NbS00028768g0003.1 protein AED:0.01 eAED:0.01 QI:43|1|0.5|1|1|1|2|241|251; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=2e-63) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT4G24660.1 (e_value=1e-64) | Symbols: ATHB22, MEE68, HB22, ZHD2 | homeobox protein 22 | chr4:12724851-12725513 REVERSE LENGTH=220;; (*ITAG) Solyc04g014260.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4560854-4561970 transcript_region:SL2.40ch04:4560854..4561970- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00032129g0003.1 protein AED:0.10 eAED:0.10 QI:62|1|1|1|1|1|2|290|265; (*SWP) sp|P12062|CB26_PETSP (e_value=0.0) Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1;; (*TAIR) AT3G27690.1 (e_value=3e-175) | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II light harvesting complex gene 2.3 | chr3:10256002-10256921 FORWARD LENGTH=266;; (*ITAG) Solyc07g047850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56404445-56405833 transcript_region:SL2.40ch07:56404445..56405833- go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 **** CB24_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00059917g0008.1 protein AED:0.26 eAED:0.28 QI:0|0.5|0|1|0.5|0.66|3|0|349; (*TAIR) AT5G26940.4 (e_value=4e-80) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:9481429-9482647 FORWARD LENGTH=316;; (*ITAG) Solyc01g100180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82003601-82007422 transcript_region:SL2.40ch01:82003601..82007422- go_terms:GO:0003676,GO:0005622 functional_description:"DNA polymerase III polC-type (AHRD V1 *-*- D2GFM8_STAAU); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00059917g0012.1 protein AED:0.37 eAED:0.39 QI:351|0.66|0.57|1|0.5|0.57|7|422|245; (*SWP) sp|Q84J70|DI193_ARATH (e_value=2e-59) Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1;; (*TAIR) AT3G05700.1 (e_value=1e-60) | Symbols: | Drought-responsive family protein | chr3:1682432-1684323 REVERSE LENGTH=223;; (*ITAG) Solyc01g100140.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:81990210-81994990 transcript_region:SL2.40ch01:81990210..81994990- go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 3 (AHRD V1 **-- DI193_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00059917g0010.1 protein AED:0.24 eAED:0.24 QI:374|0.87|0.77|0.88|0.75|0.77|9|0|336; (*SWP) sp|Q9SUJ1|SYP43_ARATH (e_value=2e-154) Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2;; (*TAIR) AT3G05710.2 (e_value=1e-155) | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 | chr3:1685262-1687229 FORWARD LENGTH=331;; (*ITAG) Solyc01g100170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81996286-82001234 transcript_region:SL2.40ch01:81996286..82001234+ go_terms:GO:0005484 functional_description:"Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) (AHRD V1 **** D7G2Z0_ECTSI); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00011608g0002.1 protein AED:0.24 eAED:0.33 QI:0|0.6|0.33|1|0.6|0.5|6|0|174; (*SWP) sp|Q0BT69|EFP_GRABC (e_value=1e-24) Elongation factor P OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=efp PE=3 SV=1;; (*TAIR) AT4G26310.1 (e_value=1e-33) | Symbols: | elongation factor P (EF-P) family protein | chr4:13314006-13316066 REVERSE LENGTH=258;; (*ITAG) Solyc01g044480.2.1 (e_value=5e-81) genomic_reference:SL2.40ch01 gene_region:39141711-39165377 transcript_region:SL2.40ch01:39141711..39165377+ functional_description:"Elongation factor P (AHRD V1 ***- B6TAH3_MAIZE); contains Interpro domain(s) IPR008991 Translation protein SH3-like "; NbS00042997g0012.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.85|0.16|0|7|0|1086; (*SWP) sp|Q54F05|DHX8_DICDI (e_value=0.0) ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1;; (*TAIR) AT3G26560.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc07g039550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:45039463-45043515 transcript_region:SL2.40ch07:45039463..45043515- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00005523g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|292; (*TAIR) AT3G25030.2 (e_value=3e-34) | Symbols: | RING/U-box superfamily protein | chr3:9122650-9123402 FORWARD LENGTH=250;; (*ITAG) Solyc09g059990.1.1 (e_value=2e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:52621572-52622315 transcript_region:SL2.40ch09:52621572..52622315+ go_terms:GO:0005516 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MVE2_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005516 NbS00005523g0002.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|1|1|1|3|545|128; (*SWP) sp|P55857|SUMO1_ORYSJ (e_value=1e-42) Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1;; (*TAIR) AT5G55160.2 (e_value=5e-42) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=116;; (*ITAG) Solyc09g059970.2.1 (e_value=7e-44) genomic_reference:SL2.40ch09 gene_region:52556197-52559727 transcript_region:SL2.40ch09:52556197..52559727+ go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier 2 (AHRD V1 ***- C3KI25_ANOFI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00027163g0009.1 protein AED:0.20 eAED:0.20 QI:74|0|0.5|1|0|0|2|0|68; (*ITAG) Solyc03g098030.2.1 (e_value=2e-16) genomic_reference:SL2.40ch03 gene_region:53828514-53831008 transcript_region:SL2.40ch03:53828514..53831008+ go_terms:GO:0016312,GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 **** Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0016312,GO:0046030 NbS00027163g0007.1 protein AED:0.73 eAED:0.74 QI:9|0|0|0.66|0.2|0.66|6|0|163 NbS00027163g0008.1 protein AED:0.16 eAED:0.19 QI:0|0|0|0.83|0.2|0.16|6|0|491; (*ITAG) Solyc03g098370.1.1 (e_value=4e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:54140047-54141571 transcript_region:SL2.40ch03:54140047..54141571- functional_description:"F-box protein interaction domain containing protein (AHRD V1 ***- Q60D10_SOLDE); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00029785g0006.1 protein AED:0.21 eAED:0.21 QI:196|1|0.77|1|0.75|0.77|9|0|343; (*SWP) sp|A8X2R2|ZFPL1_CAEBR (e_value=6e-28) Zinc finger protein-like 1 homolog OS=Caenorhabditis briggsae GN=CBG06644 PE=3 SV=1;; (*TAIR) AT2G14835.2 (e_value=2e-150) | Symbols: | RING/U-box superfamily protein | chr2:6367238-6370610 FORWARD LENGTH=343;; (*ITAG) Solyc01g107150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86522595-86530273 transcript_region:SL2.40ch01:86522595..86530273- functional_description:"Zinc finger protein-like 1 (AHRD V1 ***- B6TBU8_MAIZE)"; NbS00031036g0014.1 protein AED:0.01 eAED:0.01 QI:227|0.88|0.9|1|0.55|0.3|10|243|1176; (*SWP) sp|Q767L8|MDC1_PIG (e_value=2e-24) Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1;; (*TAIR) AT3G21480.1 (e_value=7e-113) | Symbols: | BRCT domain-containing DNA repair protein | chr3:7567730-7571990 FORWARD LENGTH=1041;; (*ITAG) Solyc01g067790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69160687-69166508 transcript_region:SL2.40ch01:69160687..69166508+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00031036g0018.1 protein AED:0.12 eAED:0.12 QI:0|0.4|0.66|0.83|0.6|0.83|6|0|409; (*SWP) sp|Q9C8X2|SUC5_ARATH (e_value=1e-105) Sucrose transport protein SUC5 OS=Arabidopsis thaliana GN=SUC5 PE=1 SV=1;; (*TAIR) AT1G71890.1 (e_value=8e-107) | Symbols: SUC5, ATSUC5 | Major facilitator superfamily protein | chr1:27058492-27060573 FORWARD LENGTH=512;; (*ITAG) Solyc11g017010.1.1 (e_value=4e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7760827-7764617 transcript_region:SL2.40ch11:7760827..7764617+ go_terms:GO:0005887,GO:0016021 functional_description:"Sucrose transporter (AHRD V1 ***- A8E0N3_TOBAC); contains Interpro domain(s) IPR005989 Sucrose/H+ symporter, plant "; GO:0005887,GO:0016021 NbS00031036g0016.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|0|0|3|0|1093; (*TAIR) AT5G18750.1 (e_value=3e-58) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:6255177-6257831 FORWARD LENGTH=884;; (*ITAG) Solyc01g067780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00015367g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.42|0.25|0.87|1|1|8|0|944; (*SWP) sp|Q86US8|EST1A_HUMAN (e_value=6e-26) Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2;; (*TAIR) AT5G19400.2 (e_value=0.0) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059;; (*ITAG) Solyc10g080740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61271723-61276562 transcript_region:SL2.40ch10:61271723..61276562+ functional_description:"Smg-7 homolog nonsense mediated mRNA decay factor (C. elegans) (Fragment) (AHRD V1 *--- B1ALB4_HUMAN); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00040004g0011.1 protein AED:0.45 eAED:0.45 QI:48|1|0|1|0|1|2|0|86; (*SWP) sp|Q9XGY5|TIM13_ORYSJ (e_value=6e-24) Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2;; (*TAIR) AT1G61570.1 (e_value=5e-24) | Symbols: TIM13 | translocase of the inner mitochondrial membrane 13 | chr1:22718897-22719473 REVERSE LENGTH=87;; (*ITAG) Solyc08g083380.2.1 (e_value=1e-32) genomic_reference:SL2.40ch08 gene_region:63000432-63003065 transcript_region:SL2.40ch08:63000432..63003065- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim13 (AHRD V1 ***- B4FYN0_MAIZE); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00040004g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|0|218; (*SWP) sp|Q9MAP3|RK11_ARATH (e_value=1e-100) 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1;; (*TAIR) AT1G32990.1 (e_value=7e-102) | Symbols: PRPL11 | plastid ribosomal protein l11 | chr1:11955827-11957139 FORWARD LENGTH=222;; (*ITAG) Solyc08g083350.2.1 (e_value=1e-122) genomic_reference:SL2.40ch08 gene_region:62993669-62996264 transcript_region:SL2.40ch08:62993669..62996264+ go_terms:GO:0003735,GO:0005515 functional_description:"50S ribosomal protein L11 (AHRD V1 ***- B6U1J2_MAIZE); contains Interpro domain(s) IPR006519 Ribosomal protein L11, bacterial-type "; GO:0003735,GO:0005515 NbS00040004g0002.1 protein AED:0.25 eAED:0.25 QI:169|0.88|0.9|1|0.77|0.6|10|715|209; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=2e-141) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT2G46860.1 (e_value=1e-132) | Symbols: AtPPa3, PPa3 | pyrophosphorylase 3 | chr2:19253843-19255060 FORWARD LENGTH=216;; (*ITAG) Solyc08g083370.2.1 (e_value=3e-147) genomic_reference:SL2.40ch08 gene_region:62998660-63000055 transcript_region:SL2.40ch08:62998660..63000055+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase (AHRD V1 **** Q2HTA8_MEDTR); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00011666g0002.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|115|202; (*SWP) sp|Q9ZT50|RHA2A_ARATH (e_value=3e-38) E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1;; (*TAIR) AT1G15100.1 (e_value=2e-39) | Symbols: RHA2A | RING-H2 finger A2A | chr1:5193703-5194170 REVERSE LENGTH=155;; (*ITAG) Solyc04g007500.1.1 (e_value=9e-75) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1170448-1170939 transcript_region:SL2.40ch04:1170448..1170939- go_terms:GO:0005515,GO:0004842 functional_description:"RING finger protein (AHRD V1 ***- Q22V07_TETTH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0004842 NbS00004256g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|4|0|305; (*SWP) sp|P45733|PAL3_TOBAC (e_value=2e-139) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=1e-102) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc10g086180.1.1 (e_value=8e-128) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00004256g0002.1 protein AED:0.39 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|163; (*SWP) sp|P45733|PAL3_TOBAC (e_value=2e-96) Phenylalanine ammonia-lyase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G53260.1 (e_value=6e-79) | Symbols: PAL2, ATPAL2 | phenylalanine ammonia-lyase 2 | chr3:19744256-19746619 REVERSE LENGTH=717;; (*ITAG) Solyc10g086180.1.1 (e_value=4e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00005908g0002.1 protein AED:0.03 eAED:0.03 QI:228|1|0.5|1|0|0|2|0|749; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=0.0) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=0.0) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc06g076280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43789379-43791625 transcript_region:SL2.40ch06:43789379..43791625+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HPF8_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00005908g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|311; (*SWP) sp|Q6NMR8|FAF3_ARATH (e_value=1e-14) Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1;; (*TAIR) AT5G19260.1 (e_value=8e-16) | Symbols: | Protein of unknown function (DUF3049) | chr5:6479494-6480360 REVERSE LENGTH=288;; (*ITAG) Solyc06g054310.1.1 (e_value=2e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:33605457-33606245 transcript_region:SL2.40ch06:33605457..33606245+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005908g0003.1 protein AED:0.21 eAED:0.21 QI:116|1|0.87|1|1|1|8|291|291; (*TAIR) AT5G59480.1 (e_value=2e-113) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:23979619-23981156 REVERSE LENGTH=282;; (*ITAG) Solyc06g076300.2.1 (e_value=8e-129) genomic_reference:SL2.40ch06 gene_region:43794163-43795989 transcript_region:SL2.40ch06:43794163..43795989- go_terms:GO:0008252 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 **** B0T131_CAUSK); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0008252 NbS00016071g0011.1 protein AED:0.12 eAED:0.12 QI:227|1|0.92|1|0.75|0.84|13|219|596; (*SWP) sp|A7SWH1|PESC_NEMVE (e_value=2e-135) Pescadillo homolog OS=Nematostella vectensis GN=v1g194255 PE=3 SV=1;; (*TAIR) AT5G14520.1 (e_value=0.0) | Symbols: | pescadillo-related | chr5:4680789-4684330 REVERSE LENGTH=590;; (*ITAG) Solyc07g047670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56216949-56224432 transcript_region:SL2.40ch07:56216949..56224432+ go_terms:GO:0003713 functional_description:"Pescadillo homolog 1 (AHRD V1 ***- B2RDF2_HUMAN); contains Interpro domain(s) IPR010613 Pescadillo, N-terminal "; GO:0003713 NbS00016071g0009.1 protein AED:0.17 eAED:0.17 QI:177|0.83|1|1|1|1|7|298|646; (*SWP) sp|Q6SZ87|NAT11_ARATH (e_value=3e-160) Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1;; (*TAIR) AT4G38050.1 (e_value=2e-161) | Symbols: | Xanthine/uracil permease family protein | chr4:17869529-17872461 REVERSE LENGTH=709;; (*ITAG) Solyc11g010690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3727300-3735391 transcript_region:SL2.40ch11:3727300..3735391+ go_terms:GO:0016020 functional_description:"Nucleobase ascorbate transporter (AHRD V1 *--- B9MYJ5_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0016020 NbS00016071g0010.1 protein AED:0.04 eAED:0.04 QI:109|0.57|0.62|1|0.57|0.5|8|111|762; (*SWP) sp|Q9FGD7|PUB50_ARATH (e_value=0.0) Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1;; (*TAIR) AT5G65500.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr5:26181093-26183997 REVERSE LENGTH=791;; (*ITAG) Solyc11g010700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3735958-3740606 transcript_region:SL2.40ch11:3735958..3740606- go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468,GO:0000151 NbS00009553g0003.1 protein AED:0.26 eAED:0.37 QI:0|0|0|1|1|1|2|0|69 NbS00009553g0008.1 protein AED:0.17 eAED:0.17 QI:0|0|0.5|0.5|1|1|2|210|102 NbS00000450g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|78; (*SWP) sp|P92543|M1110_ARATH (e_value=4e-23) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*ITAG) ATMG01110.1 (e_value=3e-24) | Symbols: ORF251 | Mitovirus RNA-dependent RNA polymerase | chrM:283034-283789 REVERSE LENGTH=251;; (*ITAG) Solyc00g142170.2.1 (e_value=2e-40) genomic_reference:SL2.40ch00 gene_region:17156703-17158111 transcript_region:SL2.40ch00:17156703..17158111- functional_description:"RNA-dependent RNA polymerase (AHRD V1 *-*- Q18L78_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00011466g0002.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|204; (*TAIR) AT3G61920.1 (e_value=7e-43) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22932638-22933201 REVERSE LENGTH=187;; (*ITAG) Solyc10g005020.2.1 (e_value=2e-95) genomic_reference:SL2.40ch10 gene_region:21051-22778 transcript_region:SL2.40ch10:21051..22778- functional_description:"Unknown Protein (AHRD V1)"; NbS00011466g0008.1 protein AED:0.33 eAED:0.38 QI:0|0|0|1|0|0|2|0|122; (*ITAG) Solyc06g074580.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42529140-42529313 transcript_region:SL2.40ch06:42529140..42529313- functional_description:"Unknown Protein (AHRD V1)"; NbS00049855g0001.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|83; (*TAIR) AT2G07820.1 (e_value=9e-15) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:3457213-3457479 REVERSE LENGTH=88; NbS00011541g0001.1 protein AED:0.10 eAED:0.10 QI:262|0.66|0.75|1|0|0.25|4|417|128; (*TAIR) AT3G45020.1 (e_value=6e-66) | Symbols: | Ribosomal L18p/L5e family protein | chr3:16469167-16469568 REVERSE LENGTH=133;; (*ITAG) Solyc11g069080.1.1 (e_value=8e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50755322-50755516 transcript_region:SL2.40ch11:50755322..50755516- functional_description:"Os09g0549700 protein (Fragment) (AHRD V1 ***- C7J776_ORYSJ)"; NbS00033725g0003.1 protein AED:0.19 eAED:0.19 QI:130|1|1|1|1|1|2|361|179; (*TAIR) AT4G03150.1 (e_value=2e-54) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1393731-1394529 REVERSE LENGTH=185;; (*ITAG) Solyc06g084470.2.1 (e_value=6e-81) genomic_reference:SL2.40ch06 gene_region:45853963-45856385 transcript_region:SL2.40ch06:45853963..45856385- functional_description:"Unknown Protein (AHRD V1)"; NbS00005475g0014.1 protein AED:0.23 eAED:0.29 QI:28|0|0|1|0|0.25|4|0|285; (*SWP) sp|Q8LB08|ADT4_ARATH (e_value=2e-119) ADP,ATP carrier protein ER-ANT1 OS=Arabidopsis thaliana GN=ER-ANT1 PE=2 SV=2;; (*TAIR) AT5G17400.1 (e_value=2e-120) | Symbols: ER-ANT1 | endoplasmic reticulum-adenine nucleotide transporter 1 | chr5:5729015-5730104 REVERSE LENGTH=306;; (*ITAG) Solyc06g069410.2.1 (e_value=3e-154) genomic_reference:SL2.40ch06 gene_region:39556556-39559850 transcript_region:SL2.40ch06:39556556..39559850+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00005475g0010.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.71|0.87|8|359|236; (*SWP) sp|Q42429|AGL8_SOLTU (e_value=2e-143) Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G60910.1 (e_value=1e-102) | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502736-24506013 REVERSE LENGTH=242;; (*ITAG) Solyc06g069430.2.1 (e_value=8e-144) genomic_reference:SL2.40ch06 gene_region:39564649-39572843 transcript_region:SL2.40ch06:39564649..39572843- go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q9SBQ1_PETHY); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00005475g0012.1 protein AED:0.37 eAED:0.37 QI:0|0|0.33|1|0|0|3|0|169; (*TAIR) AT3G03290.1 (e_value=5e-21) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:766745-767742 FORWARD LENGTH=274;; (*ITAG) Solyc06g069420.2.1 (e_value=2e-80) genomic_reference:SL2.40ch06 gene_region:39560198-39561745 transcript_region:SL2.40ch06:39560198..39561745- go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7KWY1_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00020165g0008.1 protein AED:0.14 eAED:0.14 QI:235|1|1|1|0.90|0.91|12|200|597; (*SWP) sp|Q9MBA3|RAD17_ARATH (e_value=7e-168) Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1;; (*TAIR) AT5G66130.1 (e_value=5e-169) | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 | chr5:26434236-26437091 FORWARD LENGTH=599;; (*ITAG) Solyc02g083600.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41525867-41532585 transcript_region:SL2.40ch02:41525867..41532585+ go_terms:GO:0005634,GO:0017111 functional_description:"Replication factor C large subunit (AHRD V1 *--- D4GSN1_HALVD); contains Interpro domain(s) IPR004582 Checkpoint protein Rad24 "; GO:0005634,GO:0017111 NbS00020165g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|0.66|1|4|0|587; (*TAIR) AT3G51290.2 (e_value=9e-164) | Symbols: | Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) | chr3:19039980-19044215 FORWARD LENGTH=798;; (*ITAG) Solyc02g083610.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41533936-41536777 transcript_region:SL2.40ch02:41533936..41536777- go_terms:GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; GO:0003677 NbS00020165g0012.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|70 NbS00006392g0002.1 protein AED:0.14 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|249; (*TAIR) AT5G14280.1 (e_value=2e-100) | Symbols: | DNA-binding storekeeper protein-related | chr5:4609123-4611444 FORWARD LENGTH=572;; (*ITAG) Solyc02g068010.2.1 (e_value=1e-126) genomic_reference:SL2.40ch02 gene_region:32650164-32651779 transcript_region:SL2.40ch02:32650164..32651779- go_terms:GO:0016021 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *-*- Q5IRD2_9ROSI); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00008064g0006.1 protein AED:0.05 eAED:0.06 QI:0|0|0|1|1|1|3|0|246; (*SWP) sp|Q9LUJ5|EBP2_ARATH (e_value=7e-78) Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1;; (*TAIR) AT3G22660.1 (e_value=5e-79) | Symbols: | rRNA processing protein-related | chr3:8016237-8017118 REVERSE LENGTH=293;; (*ITAG) Solyc01g006170.2.1 (e_value=3e-99) genomic_reference:SL2.40ch01 gene_region:809135-810275 transcript_region:SL2.40ch01:809135..810275- go_terms:GO:0005515 functional_description:"rRNA processing protein ebna1-binding protein-related (AHRD V1 *--* C4QG91_SCHMA); contains Interpro domain(s) IPR008610 Eukaryotic rRNA processing "; GO:0005515 NbS00008064g0010.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|642; (*ITAG) Solyc01g104790.2.1 (e_value=6e-134) genomic_reference:SL2.40ch01 gene_region:84917081-84919820 transcript_region:SL2.40ch01:84917081..84919820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008064g0004.1 protein AED:0.83 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|59 NbS00003937g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.2|1|0.75|0.6|5|0|664; (*SWP) sp|Q9FWX7|AB11B_ARATH (e_value=0.0) ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1;; (*TAIR) AT1G02520.1 (e_value=0.0) | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278;; (*ITAG) Solyc11g067300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50116112-50123472 transcript_region:SL2.40ch11:50116112..50123472+ go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00023487g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.2|0.16|0.83|1|1|6|0|354; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=2e-86) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=3e-24) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101210.2.1 (e_value=2e-92) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00055549g0002.1 protein AED:0.79 eAED:0.89 QI:0|0|0|0.4|1|1|5|0|205 NbS00055549g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.42|1|0.66|0.71|7|0|575; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=6e-172) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.2 (e_value=4e-173) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=842;; (*ITAG) Solyc02g079530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38641755-38644912 transcript_region:SL2.40ch02:38641755..38644912+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbC25280995g0001.1 protein AED:0.00 eAED:0.00 QI:49|-1|0|1|-1|1|1|257|25 NbS00006407g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|437; (*SWP) sp|Q96255|SERC_ARATH (e_value=0.0) Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1;; (*TAIR) AT4G35630.1 (e_value=0.0) | Symbols: PSAT | phosphoserine aminotransferase | chr4:16904205-16905497 FORWARD LENGTH=430;; (*ITAG) Solyc02g082830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41056853-41058151 transcript_region:SL2.40ch02:41056853..41058151+ go_terms:GO:0005515,GO:0004648 functional_description:"Phosphoserine aminotransferase (AHRD V1 **** B9H657_POPTR); contains Interpro domain(s) IPR003248 Phosphoserine aminotransferase "; GO:0005515,GO:0004648 NbS00006407g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.90|0.73|0.91|0.90|0.82|23|0|827; (*SWP) sp|Q8S2T0|GRIP_ARATH (e_value=0.0) Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2;; (*TAIR) AT5G66030.1 (e_value=0.0) | Symbols: ATGRIP, GRIP | Golgi-localized GRIP domain-containing protein | chr5:26405133-26409888 REVERSE LENGTH=788;; (*ITAG) Solyc02g082840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41059268-41070574 transcript_region:SL2.40ch02:41059268..41070574- go_terms:GO:0005515 functional_description:"Protein GRIP (AHRD V1 ***- GRIP_ARATH); contains Interpro domain(s) IPR000237 GRIP "; GO:0005515 NbS00002241g0006.1 protein AED:0.26 eAED:0.28 QI:0|0.69|0.57|1|0.53|0.71|14|0|533; (*SWP) sp|Q9LVM1|AB25B_ARATH (e_value=0.0) ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1;; (*TAIR) AT5G58270.1 (e_value=0.0) | Symbols: STA1, ATATM3, ATM3 | ABC transporter of the mitochondrion 3 | chr5:23562168-23567040 FORWARD LENGTH=728;; (*ITAG) Solyc09g055350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:35636998-35672737 transcript_region:SL2.40ch09:35636998..35672737+ go_terms:GO:0015232 functional_description:"ABC transporter ATP-binding/permease protein (AHRD V1 **** A3SXQ3_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015232 NbS00002241g0108.1 protein AED:0.00 eAED:0.00 QI:157|1|1|1|1|1|2|215|295 NbS00002241g0109.1 protein AED:0.23 eAED:0.23 QI:274|1|1|1|0.44|0.4|10|261|270 NbS00047871g0006.1 protein AED:0.01 eAED:0.01 QI:381|1|1|1|1|1|2|254|251; (*SWP) sp|P25818|TIP11_ARATH (e_value=7e-136) Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1;; (*TAIR) AT2G36830.1 (e_value=5e-137) | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma tonoplast intrinsic protein | chr2:15445490-15446336 FORWARD LENGTH=251;; (*ITAG) Solyc06g074820.2.1 (e_value=3e-160) genomic_reference:SL2.40ch06 gene_region:42747475-42749825 transcript_region:SL2.40ch06:42747475..42749825+ go_terms:GO:0015250 functional_description:"Aquaporin-like protein (AHRD V1 ***- D1M6Z5_CAPAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00047871g0005.1 protein AED:0.51 eAED:0.51 QI:9|0|0.33|0.66|0|0.33|3|166|55 NbS00004029g0013.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|673; (*SWP) sp|Q9M3A8|PP273_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g49240 OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1;; (*TAIR) AT3G49240.1 (e_value=0.0) | Symbols: emb1796 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18256086-18257975 FORWARD LENGTH=629;; (*ITAG) Solyc03g083280.2.1 (e_value=8e-127) genomic_reference:SL2.40ch03 gene_region:46666655-46668863 transcript_region:SL2.40ch03:46666655..46668863- go_terms:GO:0005515,GO:0005524 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005515,GO:0005524 NbS00004029g0021.1 protein AED:0.15 eAED:0.15 QI:461|0.91|0.84|1|0.66|0.69|13|2551|947; (*TAIR) AT4G00990.1 (e_value=1e-12) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr4:427035-431535 FORWARD LENGTH=840;; (*ITAG) Solyc04g049140.2.1 (e_value=9e-13) genomic_reference:SL2.40ch04 gene_region:38967716-38986680 transcript_region:SL2.40ch04:38967716..38986680- go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00004029g0020.1 protein AED:0.19 eAED:0.19 QI:0|0.87|0.88|0.94|0.87|0.82|17|580|632; (*SWP) sp|O67356|CLPX_AQUAE (e_value=1e-129) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex aeolicus (strain VF5) GN=clpX PE=3 SV=1;; (*TAIR) AT5G53350.1 (e_value=0.0) | Symbols: CLPX | CLP protease regulatory subunit X | chr5:21644060-21647503 FORWARD LENGTH=579;; (*ITAG) Solyc03g083250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46645114-46653685 transcript_region:SL2.40ch03:46645114..46653685+ go_terms:GO:0004176 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 **** B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0004176 NbS00004029g0023.1 protein AED:0.24 eAED:0.27 QI:382|0.33|0.75|1|0.66|1|4|230|338; (*SWP) sp|Q84JL3|SINA3_ARATH (e_value=0.0) E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1;; (*TAIR) AT3G61790.1 (e_value=0.0) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326;; (*ITAG) Solyc03g083270.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46661169-46665617 transcript_region:SL2.40ch03:46661169..46665617+ go_terms:GO:0004842 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 **-* B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0004842 NbS00004029g0024.1 protein AED:0.24 eAED:0.33 QI:0|0|0|1|1|1|2|0|151 NbS00004029g0022.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.66|0|0|3|0|131; (*SWP) sp|Q09G50|PSBC_PLAOC (e_value=2e-51) Photosystem II CP43 chlorophyll apoprotein OS=Platanus occidentalis GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=6e-52) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc10g017940.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6084037-6085668 transcript_region:SL2.40ch10:6084037..6085668+ go_terms:GO:0016020 functional_description:"Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- B8R498_TRISU); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like "; GO:0016020 NbS00059115g0004.1 protein AED:0.42 eAED:0.42 QI:164|0.66|0.5|1|0|0.25|4|0|129; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=7e-87) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=5e-88) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc10g011740.2.1 (e_value=8e-88) genomic_reference:SL2.40ch10 gene_region:3983198-3987001 transcript_region:SL2.40ch10:3983198..3987001- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 8 (AHRD V1 **** UBC8_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbC24327324g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|1|1|-1|1|1|0|107; (*SWP) sp|P32295|ARG7_VIGRR (e_value=6e-24) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT1G75580.1 (e_value=1e-56) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28377530-28377856 FORWARD LENGTH=108;; (*ITAG) Solyc04g081270.1.1 (e_value=7e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62890273-62890599 transcript_region:SL2.40ch04:62890273..62890599- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00024217g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|127; (*SWP) sp|Q94JX9|NACA2_ARATH (e_value=8e-51) Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2;; (*TAIR) AT3G49470.1 (e_value=6e-52) | Symbols: NACA2 | nascent polypeptide-associated complex subunit alpha-like protein 2 | chr3:18341072-18342273 FORWARD LENGTH=217;; (*ITAG) Solyc03g080160.2.1 (e_value=1e-56) genomic_reference:SL2.40ch03 gene_region:45598367-45600275 transcript_region:SL2.40ch03:45598367..45600275- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex alpha subunit-like protein (AHRD V1 ***- B6SU89_MAIZE); contains Interpro domain(s) IPR016641 Nascent polypeptide-associated complex, alpha subunit "; GO:0051082 NbS00024217g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.5|1|1|1|4|0|328; (*SWP) sp|A7QEU4|PER5_VITVI (e_value=9e-174) Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=2;; (*TAIR) AT3G21770.1 (e_value=2e-92) | Symbols: | Peroxidase superfamily protein | chr3:7673345-7674661 FORWARD LENGTH=329;; (*ITAG) Solyc03g080150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45596850-45598444 transcript_region:SL2.40ch03:45596850..45598444+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 **** Q9SSZ9_SCUBA); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00002211g0012.1 protein AED:0.11 eAED:0.11 QI:124|0.75|0.8|1|0.25|0.2|5|705|172; (*SWP) sp|O81027|HMGCL_ARATH (e_value=1e-57) Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2;; (*TAIR) AT2G26800.1 (e_value=6e-59) | Symbols: | Aldolase superfamily protein | chr2:11429192-11432185 REVERSE LENGTH=433;; (*ITAG) Solyc01g080170.2.1 (e_value=2e-68) genomic_reference:SL2.40ch01 gene_region:71896234-71905652 transcript_region:SL2.40ch01:71896234..71905652+ go_terms:GO:0008152,GO:0003824 functional_description:"Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase "; GO:0008152,GO:0003824 NbS00002211g0017.1 protein AED:0.06 eAED:0.06 QI:248|0.71|0.73|1|0.71|0.66|15|273|619; (*SWP) sp|Q8GZB6|SUVH4_ARATH (e_value=0.0) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2;; (*TAIR) AT5G13960.1 (e_value=0.0) | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4 | chr5:4501688-4505979 FORWARD LENGTH=624;; (*ITAG) Solyc02g094520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49614028-49632724 transcript_region:SL2.40ch02:49614028..49632724- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00002211g0013.1 protein AED:0.20 eAED:0.20 QI:121|0.87|0.88|1|1|1|9|268|741; (*SWP) sp|Q08E13|RNF10_BOVIN (e_value=2e-48) RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1;; (*TAIR) AT3G26730.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:9823770-9827270 FORWARD LENGTH=772;; (*ITAG) Solyc02g094510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49597489-49611444 transcript_region:SL2.40ch02:49597489..49611444- functional_description:"Ring finger protein 10 (AHRD V1 *-*- Q6P1V6_XENTR)"; NbS00037551g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|149; (*ITAG) Solyc04g077620.1.1 (e_value=3e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:60169868-60170242 transcript_region:SL2.40ch04:60169868..60170242+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022636g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|310; (*SWP) sp|P23547|E13G_TOBAC (e_value=6e-104) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=1e-76) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=2e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00022636g0011.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.75|0|0|4|0|367; (*SWP) sp|P23547|E13G_TOBAC (e_value=7e-116) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=3e-85) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc11g065280.1.1 (e_value=2e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47758643-47759659 transcript_region:SL2.40ch11:47758643..47759659+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00032174g0001.1 protein AED:0.03 eAED:0.08 QI:33|0|0.5|1|0|0.5|2|167|156; (*TAIR) AT4G39730.1 (e_value=1e-52) | Symbols: | Lipase/lipooxygenase, PLAT/LH2 family protein | chr4:18432950-18433581 FORWARD LENGTH=181;; (*ITAG) Solyc03g093360.2.1 (e_value=7e-101) genomic_reference:SL2.40ch03 gene_region:48078644-48079817 transcript_region:SL2.40ch03:48078644..48079817+ functional_description:"Wound/stress protein (AHRD V1 **-- Q672Q3_SOLLC); contains Interpro domain(s) IPR001024 Lipoxygenase, LH2 "; NbS00032174g0008.1 protein AED:0.11 eAED:0.24 QI:0|0.5|0|1|0.5|0.33|3|0|978; (*SWP) sp|Q8NIW7|BBP_NEUCR (e_value=6e-69) Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bpb-1 PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=0.0) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00004802g0023.1 protein AED:0.18 eAED:0.35 QI:18|0|0|1|0.14|0|8|0|2205; (*SWP) sp|Q39214|RPM1_ARATH (e_value=5e-87) Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1;; (*TAIR) AT3G07040.1 (e_value=4e-88) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc11g010160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004802g0008.1 protein AED:0.63 eAED:0.79 QI:0|-1|0|1|-1|1|1|0|142; (*ITAG) Solyc11g010160.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004802g0025.1 protein AED:0.15 eAED:0.15 QI:0|1|0.5|1|1|1|4|0|368; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=7e-58) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT5G65280.1 (e_value=0.0) | Symbols: GCL1 | GCR2-like 1 | chr5:26086129-26088069 REVERSE LENGTH=433;; (*ITAG) Solyc11g010170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3257971-3262718 transcript_region:SL2.40ch11:3257971..3262718- functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "; NbS00004802g0014.1 protein AED:0.76 eAED:0.76 QI:0|0|0.33|0.33|1|1|3|0|68; (*TAIR) AT4G23730.1 (e_value=5e-17) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=2e-29) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00004802g0029.1 protein AED:0.44 eAED:0.53 QI:0|0|0|1|0|0|2|0|91; (*ITAG) Solyc11g010160.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004802g0101.1 protein AED:0.42 eAED:0.46 QI:0|0|0.5|1|1|1|2|250|156 NbS00056952g0006.1 protein AED:0.11 eAED:0.11 QI:166|0.83|1|1|0.83|0.85|7|6|294; (*TAIR) AT2G25910.2 (e_value=5e-153) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=342;; (*ITAG) Solyc08g065880.2.1 (e_value=5e-179) genomic_reference:SL2.40ch08 gene_region:51427066-51436156 transcript_region:SL2.40ch08:51427066..51436156+ go_terms:GO:0003676,GO:0003723,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 **-- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0003723,GO:0005622 NbS00056952g0009.1 protein AED:0.20 eAED:0.20 QI:226|0.90|0.75|1|0.81|0.91|12|0|585; (*SWP) sp|Q8VY07|EPN1_ARATH (e_value=7e-149) Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1;; (*TAIR) AT5G11710.1 (e_value=5e-150) | Symbols: | ENTH/VHS family protein | chr5:3772981-3776316 FORWARD LENGTH=560;; (*ITAG) Solyc08g065890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51436135-51445764 transcript_region:SL2.40ch08:51436135..51445764- functional_description:"Epsin (AHRD V1 *-*- D3BQV6_POLPA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00018957g0003.1 protein AED:0.35 eAED:0.35 QI:434|1|1|1|0.8|0.66|6|91|239; (*SWP) sp|Q6PDY2|AEDO_MOUSE (e_value=5e-21) 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2;; (*TAIR) AT2G42670.2 (e_value=7e-120) | Symbols: | Protein of unknown function (DUF1637) | chr2:17772004-17773700 REVERSE LENGTH=242;; (*ITAG) Solyc10g007990.2.1 (e_value=1e-165) genomic_reference:SL2.40ch10 gene_region:2144877-2151960 transcript_region:SL2.40ch10:2144877..2151960+ go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B6T568_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00010235g0011.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|418; (*SWP) sp|Q9FFG8|PP417_ARATH (e_value=9e-59) Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1;; (*TAIR) AT5G44230.1 (e_value=7e-60) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17814336-17816309 FORWARD LENGTH=657;; (*ITAG) Solyc07g065730.1.1 (e_value=4e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64617433-64619313 transcript_region:SL2.40ch07:64617433..64619313- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00010235g0012.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|1|0.5|0.33|3|0|611; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc07g065710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00010235g0004.1 protein AED:0.38 eAED:0.38 QI:80|1|0.5|1|0|0.5|2|0|94; (*TAIR) AT3G29170.1 (e_value=4e-23) | Symbols: | Eukaryotic protein of unknown function (DUF872) | chr3:11136240-11137542 REVERSE LENGTH=121;; (*ITAG) Solyc07g065740.2.1 (e_value=3e-31) genomic_reference:SL2.40ch07 gene_region:64619737-64620846 transcript_region:SL2.40ch07:64619737..64620846- functional_description:"UPF0414 transmembrane protein C20orf30 homolog (AHRD V1 ***- B5X9I3_SALSA); contains Interpro domain(s) IPR008590 Uncharacterised protein family UPF0414 "; NbS00010235g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|143; (*SWP) sp|P0C899|PP271_ARATH (e_value=1e-39) Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1;; (*TAIR) AT3G49142.1 (e_value=7e-41) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=686;; (*ITAG) Solyc07g065730.1.1 (e_value=5e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64617433-64619313 transcript_region:SL2.40ch07:64617433..64619313- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00021853g0008.1 protein AED:0.04 eAED:0.04 QI:162|1|1|1|0.8|0.90|11|313|686; (*SWP) sp|Q641G4|CNDH2_XENLA (e_value=1e-27) Condensin-2 complex subunit H2 OS=Xenopus laevis GN=ncaph2 PE=1 SV=1;; (*TAIR) AT3G16730.1 (e_value=1e-177) | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695633-5698863 REVERSE LENGTH=683;; (*ITAG) Solyc12g099420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00021853g0009.1 protein AED:0.06 eAED:0.06 QI:0|1|0.75|1|1|1|4|0|558; (*SWP) sp|Q8GX86|PME21_ARATH (e_value=4e-175) Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2;; (*TAIR) AT3G05610.1 (e_value=3e-176) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669;; (*ITAG) Solyc12g099410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64908214-64911852 transcript_region:SL2.40ch12:64908214..64911852+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- Q4G2Z0_TOBAC); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00021853g0010.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|0.5|2|0|125; (*SWP) sp|P80299|HYES_RAT (e_value=1e-14) Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1;; (*TAIR) AT4G02340.1 (e_value=3e-25) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc01g066450.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:66811956-66814675 transcript_region:SL2.40ch01:66811956..66814675+ go_terms:GO:0003824 functional_description:"Epoxide hydrolase (AHRD V1 ***- Q41415_SOLTU); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00010129g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|1|1|2|131|318; (*SWP) sp|P23547|E13G_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=2e-117) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g008620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2700728-2702463 transcript_region:SL2.40ch01:2700728..2702463+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00024666g0015.1 protein AED:0.10 eAED:0.11 QI:0|0.25|0.4|1|0.5|0.8|5|0|416; (*TAIR) AT5G45310.1 (e_value=7e-57) | Symbols: | unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:18359373-18360796 REVERSE LENGTH=352;; (*ITAG) Solyc08g075150.2.1 (e_value=5e-164) genomic_reference:SL2.40ch08 gene_region:56464526-56467946 transcript_region:SL2.40ch08:56464526..56467946- functional_description:"Genomic DNA chromosome 5 TAC clone K9E15 (AHRD V1 *-*- Q9FH79_ARATH)"; NbS00024666g0010.1 protein AED:0.27 eAED:0.31 QI:0|0.37|0.44|1|0.5|0.66|9|0|688; (*TAIR) AT5G12220.1 (e_value=5e-59) | Symbols: | las1-like family protein | chr5:3950218-3953014 FORWARD LENGTH=611;; (*ITAG) Solyc07g045370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55797882-55805983 transcript_region:SL2.40ch07:55797882..55805983- functional_description:"Las1-like family protein expressed (AHRD V1 ***- Q2QWN0_ORYSJ); contains Interpro domain(s) IPR007174 Las1-like "; NbS00024666g0013.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|0|0.5|2|0|147; (*ITAG) Solyc08g075140.1.1 (e_value=6e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56461709-56463324 transcript_region:SL2.40ch08:56461709..56463324+ go_terms:GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0046983 NbS00024666g0014.1 protein AED:0.39 eAED:0.66 QI:0|0|0|1|0|0|2|0|64 NbC26273242g0002.1 protein AED:0.00 eAED:0.00 QI:183|1|1|1|1|1|2|432|177; (*TAIR) AT5G47060.1 (e_value=7e-36) | Symbols: | Protein of unknown function (DUF581) | chr5:19116843-19117639 FORWARD LENGTH=177;; (*ITAG) Solyc06g061010.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:35386937-35388128 transcript_region:SL2.40ch06:35386937..35388128- functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00024864g0001.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|0|0|2|99|386; (*SWP) sp|O49279|SKI15_ARATH (e_value=2e-155) SKP1-interacting partner 15 OS=Arabidopsis thaliana GN=SKIP15 PE=1 SV=1;; (*TAIR) AT1G76920.1 (e_value=1e-156) | Symbols: | F-box family protein | chr1:28892295-28893419 FORWARD LENGTH=374;; (*ITAG) Solyc04g071130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:55647119-55648252 transcript_region:SL2.40ch04:55647119..55648252- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- B9H7Q7_POPTR); contains Interpro domain(s) IPR011498 Kelch repeat type 2 "; GO:0005515,GO:0004842 NbS00039624g0007.1 protein AED:0.11 eAED:0.11 QI:236|0.5|0.33|1|1|1|3|0|316; (*TAIR) AT4G23060.1 (e_value=8e-17) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g007920.1.1 (e_value=4e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:2425707-2427454 transcript_region:SL2.40ch08:2425707..2427454+ functional_description:"Calmodulin binding protein (AHRD V1 **-- B6T589_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00017114g0007.1 protein AED:0.10 eAED:0.10 QI:782|1|0.66|1|1|1|3|0|357; (*SWP) sp|O04336|WRK21_ARATH (e_value=2e-110) Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=2 SV=1;; (*TAIR) AT2G30590.1 (e_value=2e-111) | Symbols: WRKY21 | WRKY DNA-binding protein 21 | chr2:13033891-13035303 FORWARD LENGTH=380;; (*ITAG) Solyc06g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2512503-2514892 transcript_region:SL2.40ch06:2512503..2514892+ go_terms:GO:0005516 functional_description:"WRKY transcription factor 25 (AHRD V1 ***- C9DI14_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005516 NbS00017114g0010.1 protein AED:0.31 eAED:0.37 QI:0|0|0.5|1|1|1|2|192|63 NbS00057112g0001.1 protein AED:0.16 eAED:0.30 QI:0|0.66|0.25|1|1|1|4|0|254; (*SWP) sp|Q9FXE4|P2C14_ARATH (e_value=1e-85) Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2;; (*TAIR) AT1G67820.1 (e_value=1e-86) | Symbols: | Protein phosphatase 2C family protein | chr1:25429882-25431484 FORWARD LENGTH=445;; (*ITAG) Solyc06g082080.2.1 (e_value=8e-66) genomic_reference:SL2.40ch06 gene_region:44304768-44306777 transcript_region:SL2.40ch06:44304768..44306777+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00001202g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|169; (*SWP) sp|Q9FN93|Y5596_ARATH (e_value=2e-25) Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1;; (*TAIR) AT4G29990.1 (e_value=1e-35) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr4:14665802-14669438 REVERSE LENGTH=876;; (*ITAG) Solyc06g062450.2.1 (e_value=3e-58) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00001202g0004.1 protein AED:0.30 eAED:0.42 QI:0|-1|0|1|-1|0|1|0|127; (*SWP) sp|O65924|Y2921_ARATH (e_value=1e-33) Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=2 SV=1;; (*TAIR) AT2G19210.1 (e_value=1e-34) | Symbols: | Leucine-rich repeat transmembrane protein kinase protein | chr2:8335639-8339307 REVERSE LENGTH=881;; (*ITAG) Solyc06g062450.2.1 (e_value=5e-45) genomic_reference:SL2.40ch06 gene_region:35794799-35796558 transcript_region:SL2.40ch06:35794799..35796558+ functional_description:"Receptor protein kinase-like (AHRD V1 ***- Q6ERZ1_ORYSJ)"; NbS00005977g0009.1 protein AED:0.27 eAED:0.28 QI:0|1|0.91|1|0.81|0.91|12|444|455; (*SWP) sp|Q93Z81|CAX3_ARATH (e_value=0.0) Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1;; (*TAIR) AT3G51860.1 (e_value=0.0) | Symbols: CAX3, ATHCX1, CAX1-LIKE, ATCAX3 | cation exchanger 3 | chr3:19239458-19242519 FORWARD LENGTH=459;; (*ITAG) Solyc09g005260.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:191528-195466 transcript_region:SL2.40ch09:191528..195466- go_terms:GO:0015369 functional_description:"Calcium/proton exchanger (AHRD V1 **** C4JVH2_UNCRE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0015369 NbS00006325g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|313; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=4e-71) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=3e-72) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc04g074810.2.1 (e_value=5e-121) genomic_reference:SL2.40ch04 gene_region:58316431-58320023 transcript_region:SL2.40ch04:58316431..58320023- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00002881g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|271; (*ITAG) Solyc05g024020.1.1 (e_value=8e-89) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:30241291-30242064 transcript_region:SL2.40ch05:30241291..30242064+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002881g0012.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|0.5|1|3|0|152; (*TAIR) AT5G13190.1 (e_value=9e-67) | Symbols: | CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4204987-4206205 REVERSE LENGTH=134;; (*ITAG) Solyc01g009780.2.1 (e_value=1e-91) genomic_reference:SL2.40ch01 gene_region:4205344-4209004 transcript_region:SL2.40ch01:4205344..4209004+ functional_description:"LITAF-domain-containing protein (AHRD V1 ***- Q4U6G1_PEA); contains Interpro domain(s) IPR006629 LPS-induced tumor necrosis factor alpha factor "; NbS00034352g0005.1 protein AED:0.24 eAED:0.24 QI:182|1|1|1|0.81|0.91|12|440|318; (*SWP) sp|Q9Y394|DHRS7_HUMAN (e_value=1e-60) Dehydrogenase/reductase SDR family member 7 OS=Homo sapiens GN=DHRS7 PE=1 SV=1;; (*TAIR) AT3G03330.1 (e_value=2e-158) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:783572-786148 REVERSE LENGTH=328;; (*ITAG) Solyc04g024590.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:13496900-13513313 transcript_region:SL2.40ch04:13496900..13513313- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7 (AHRD V1 ***- B6T753_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00008003g0012.1 protein AED:0.23 eAED:0.23 QI:41|0.77|0.84|0.94|0.83|0.84|19|219|693; (*SWP) sp|Q9LS42|CASP_ARATH (e_value=0.0) Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2;; (*TAIR) AT3G18480.1 (e_value=0.0) | Symbols: AtCASP, CASP | CCAAT-displacement protein alternatively spliced product | chr3:6336924-6341596 FORWARD LENGTH=689;; (*ITAG) Solyc06g069210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39360592-39372973 transcript_region:SL2.40ch06:39360592..39372973+ go_terms:GO:0003677,GO:0003682,GO:0016564 functional_description:"CASP-like protein (AHRD V1 ***- D0NFX2_PHYIN); contains Interpro domain(s) IPR012955 CASP, C-terminal "; GO:0003677,GO:0003682,GO:0016564 NbS00008003g0013.1 protein AED:0.06 eAED:0.06 QI:165|0.90|1|1|0.90|0.91|12|252|889; (*SWP) sp|O24617|MSH2_ARATH (e_value=0.0) DNA mismatch repair protein Msh2 OS=Arabidopsis thaliana GN=MSH2 PE=2 SV=1;; (*TAIR) AT3G18524.1 (e_value=0.0) | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368151-6372409 REVERSE LENGTH=937;; (*ITAG) Solyc06g069230.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39378221-39385383 transcript_region:SL2.40ch06:39378221..39385383- go_terms:GO:0032137 functional_description:"DNA mismatch repair protein muts (AHRD V1 ***- D2V0B3_NAEGR); contains Interpro domain(s) IPR011184 DNA mismatch repair protein, MSH2 "; GO:0032137 NbS00008003g0003.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|361; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=7e-139) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G18490.1 (e_value=5e-140) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:6349090-6350592 REVERSE LENGTH=500;; (*ITAG) Solyc03g119690.1.1 (e_value=3e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62293271-62294875 transcript_region:SL2.40ch03:62293271..62294875- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JAA3_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00013925g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|506; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=5e-130) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc01g008650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2712022-2714463 transcript_region:SL2.40ch01:2712022..2714463- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017415g0002.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.57|1|1|1|7|307|916; (*SWP) sp|P42730|CLPB1_ARATH (e_value=0.0) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT1G74310.1 (e_value=0.0) | Symbols: ATHSP101, HSP101, HOT1 | heat shock protein 101 | chr1:27936715-27939862 REVERSE LENGTH=911;; (*ITAG) Solyc03g115230.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59065016-59069171 transcript_region:SL2.40ch03:59065016..59069171- go_terms:GO:0019538,GO:0005524,GO:0017111 functional_description:"ClpB chaperone (AHRD V1 ***- D6QXI5_TRYCR); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111 NbS00017415g0117.1 protein AED:0.05 eAED:0.05 QI:329|1|1|1|0|0|3|314|64 NbS00017415g0121.1 protein AED:0.06 eAED:0.06 QI:0|0.6|0.27|1|0.6|0.45|11|0|1904 NbS00017415g0123.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0.5|0.4|5|0|494 NbS00017415g0120.1 protein AED:0.01 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|264 NbS00017415g0108.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|138 NbS00017415g0124.1 protein AED:0.35 eAED:0.35 QI:239|0.90|0.91|1|0.81|0.75|12|388|638 NbS00010094g0011.1 protein AED:0.15 eAED:0.15 QI:284|0.75|0.6|1|0.5|0.6|5|445|484; (*SWP) sp|Q9FJU9|E1313_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1;; (*TAIR) AT5G56590.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:22907521-22909436 FORWARD LENGTH=506;; (*ITAG) Solyc12g008580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1968665-1973480 transcript_region:SL2.40ch12:1968665..1973480+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 ***- B6TCY1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00010094g0008.1 protein AED:0.01 eAED:0.01 QI:68|0.75|0.8|1|0.75|0.6|5|362|175; (*SWP) sp|O65812|PROF1_HEVBR (e_value=6e-72) Profilin-1 OS=Hevea brasiliensis PE=1 SV=1;; (*TAIR) AT2G19760.1 (e_value=3e-63) | Symbols: PFN1, PRF1 | profilin 1 | chr2:8517074-8518067 REVERSE LENGTH=131;; (*ITAG) Solyc11g070130.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51738809-51741342 transcript_region:SL2.40ch11:51738809..51741342+ go_terms:GO:0030036,GO:0015629 functional_description:"Profilin (AHRD V1 ***- Q8VWR0_SOLLC); contains Interpro domain(s) IPR005455 Profilin, plant "; GO:0030036,GO:0015629 NbS00056973g0003.1 protein AED:0.10 eAED:0.10 QI:165|1|0.87|1|1|1|8|0|643; (*SWP) sp|Q9CAL2|CRK3_ARATH (e_value=2e-123) Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1;; (*TAIR) AT1G70530.1 (e_value=2e-124) | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=646;; (*ITAG) Solyc11g011880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4818939-4822147 transcript_region:SL2.40ch11:4818939..4822147- go_terms:GO:0004702 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702 NbS00010693g0001.1 protein AED:0.08 eAED:0.08 QI:62|0|0.5|1|0|0.5|2|0|439; (*SWP) sp|Q4R749|FADS2_MACFA (e_value=8e-44) Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00010693g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|147; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=7e-74) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=5e-75) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071870.2.1 (e_value=2e-77) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00001761g0007.1 protein AED:0.19 eAED:0.19 QI:66|0.87|0.88|1|0.62|0.66|9|456|283; (*SWP) sp|Q39366|LGUL_BRAOG (e_value=1e-164) Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1;; (*TAIR) AT1G11840.6 (e_value=1e-166) | Symbols: GLX1 | glyoxalase I homolog | chr1:3995928-3997518 FORWARD LENGTH=322;; (*ITAG) Solyc02g080630.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39392539-39397791 transcript_region:SL2.40ch02:39392539..39397791- go_terms:GO:0046872 functional_description:"Lactoylglutathione lyase (AHRD V1 ***- D2D330_GOSHI); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0046872 NbS00009023g0001.1 protein AED:0.31 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|163 NbS00012772g0006.1 protein AED:0.24 eAED:0.24 QI:55|1|1|1|1|1|2|362|167 NbS00012772g0001.1 protein AED:0.44 eAED:0.59 QI:149|0|0.16|0.5|1|1|6|0|149; (*SWP) sp|P57751|UGPA1_ARATH (e_value=2e-25) UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1;; (*TAIR) AT5G17310.2 (e_value=1e-26) | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 | chr5:5696955-5700845 REVERSE LENGTH=470;; (*ITAG) Solyc05g054060.2.1 (e_value=2e-26) genomic_reference:SL2.40ch05 gene_region:63182024-63189388 transcript_region:SL2.40ch05:63182024..63189388- go_terms:GO:0003983,GO:0042802 functional_description:"UTP-glucose 1 phosphate uridylyltransferase (AHRD V1 **** B3VDY8_EUCGR); contains Interpro domain(s) IPR016267 UTP--glucose-1-phosphate uridylyltransferase, subgroup "; GO:0003983,GO:0042802 NbS00001183g0003.1 protein AED:0.12 eAED:0.12 QI:392|0.83|0.92|1|0.91|0.92|13|225|468; (*SWP) sp|Q8L7B2|SCP20_ARATH (e_value=0.0) Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2;; (*TAIR) AT4G12910.1 (e_value=0.0) | Symbols: scpl20 | serine carboxypeptidase-like 20 | chr4:7550576-7553051 REVERSE LENGTH=497;; (*ITAG) Solyc06g083030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44876797-44881413 transcript_region:SL2.40ch06:44876797..44881413- go_terms:GO:0042802 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TDA5_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802 NbS00042841g0001.1 protein AED:0.04 eAED:0.04 QI:458|1|0.5|1|1|1|2|0|595; (*SWP) sp|F4I8B9|Y1501_ARATH (e_value=4e-20) Putative WEB family protein At1g65010, chloroplastic OS=Arabidopsis thaliana GN=At1g65010 PE=1 SV=1;; (*TAIR) AT4G40020.1 (e_value=2e-49) | Symbols: | Myosin heavy chain-related protein | chr4:18553453-18555300 REVERSE LENGTH=615;; (*ITAG) Solyc11g010210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3280166-3281911 transcript_region:SL2.40ch11:3280166..3281911- functional_description:"SKIP interacting protein 3 (Fragment) (AHRD V1 *-*- B8Q889_ORYSI)"; NbS00060587g0003.1 protein AED:0.19 eAED:0.47 QI:69|0.33|0.25|1|0|0.25|4|0|128; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=2e-48) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT5G50790.1 (e_value=5e-27) | Symbols: SWEET10, AtSWEET10 | Nodulin MtN3 family protein | chr5:20656461-20657827 REVERSE LENGTH=289;; (*ITAG) Solyc09g074530.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:61857563-61859113 transcript_region:SL2.40ch09:61857563..61859113+ go_terms:GO:0016021 functional_description:"MTN3 (AHRD V1 **-- B6T9U6_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00002283g0007.1 protein AED:0.26 eAED:0.27 QI:199|0.8|0.90|1|0.7|0.63|11|248|446; (*SWP) sp|P40986|CDC1_YEAST (e_value=2e-19) Cell division control protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC1 PE=1 SV=2;; (*TAIR) AT1G53710.1 (e_value=7e-101) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:20053339-20056271 REVERSE LENGTH=528;; (*ITAG) Solyc12g055740.1.1 (e_value=2e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47085573-47090460 transcript_region:SL2.40ch12:47085573..47090460- go_terms:GO:0016787 functional_description:"Serine/threonine phosphatase-like protein (Fragment) (AHRD V1 *--- B2ZLM8_HELPE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00027075g0001.1 protein AED:0.49 eAED:0.49 QI:0|0.33|0|0.75|1|1|4|0|266; (*TAIR) AT3G47580.1 (e_value=3e-13) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17532687-17535810 FORWARD LENGTH=1011;; (*ITAG) Solyc06g006050.1.1 (e_value=1e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1066684-1067610 transcript_region:SL2.40ch06:1066684..1067610- go_terms:GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004674 NbS00027075g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|339; (*TAIR) AT2G35150.1 (e_value=3e-129) | Symbols: EXL1 | EXORDIUM like 1 | chr2:14817220-14818191 REVERSE LENGTH=323;; (*ITAG) Solyc10g074540.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57429414-57430448 transcript_region:SL2.40ch10:57429414..57430448- functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP3_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00045053g0006.1 protein AED:0.04 eAED:0.04 QI:121|1|0.87|1|0.71|0.87|8|378|242; (*SWP) sp|Q8N5L8|RP25L_HUMAN (e_value=3e-17) Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1;; (*TAIR) AT3G07030.1 (e_value=4e-66) | Symbols: | Alba DNA/RNA-binding protein | chr3:2223001-2225254 REVERSE LENGTH=405;; (*ITAG) Solyc09g061710.2.1 (e_value=4e-82) genomic_reference:SL2.40ch09 gene_region:55796984-55801356 transcript_region:SL2.40ch09:55796984..55801356- go_terms:GO:0003676 functional_description:"Ribonuclease P protein subunit p25 (AHRD V1 *--- RPP25_HUMAN); contains Interpro domain(s) IPR002775 Alba, DNA/RNA-binding protein "; GO:0003676 NbS00045053g0007.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|0.5|2|0|186; (*TAIR) AT3G24750.1 (e_value=2e-15) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9036735-9037564 FORWARD LENGTH=169;; (*ITAG) Solyc09g061730.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:55813029-55815082 transcript_region:SL2.40ch09:55813029..55815082- functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 ***- Q9LRY4_ARATH)"; NbS00018450g0004.1 protein AED:0.17 eAED:0.17 QI:568|0.85|0.87|1|0.85|0.87|8|331|328; (*SWP) sp|Q9ZPQ3|GEK1_ARATH (e_value=1e-151) D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2;; (*TAIR) AT2G03800.1 (e_value=8e-153) | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317;; (*ITAG) Solyc06g069390.2.1 (e_value=5e-154) genomic_reference:SL2.40ch06 gene_region:39540431-39546469 transcript_region:SL2.40ch06:39540431..39546469- go_terms:GO:0051499 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** DTDA_ARCFU); contains Interpro domain(s) IPR018033 Uncharacterized conserved protein UCP016210 "; GO:0051499 NbS00018450g0111.1 protein AED:0.27 eAED:0.29 QI:64|0.42|0.37|1|1|0.87|8|552|364 NbS00018450g0110.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.25|1|1|1|4|0|355 NbS00018450g0108.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|84 NbS00018450g0114.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|85 NbS00018450g0112.1 protein AED:0.63 eAED:0.73 QI:0|0|0|0.5|1|1|2|0|80 NbS00018450g0113.1 protein AED:0.39 eAED:0.85 QI:0|0|0|1|0|0|3|0|74 NbS00040513g0003.1 protein AED:0.22 eAED:0.22 QI:67|1|1|1|0.66|0.75|4|240|168; (*SWP) sp|Q5HZM1|EIF1A_XENLA (e_value=2e-18) Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1;; (*TAIR) AT2G40780.1 (e_value=4e-63) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:17021875-17022748 FORWARD LENGTH=171;; (*ITAG) Solyc05g052180.2.1 (e_value=3e-86) genomic_reference:SL2.40ch05 gene_region:61608062-61610738 transcript_region:SL2.40ch05:61608062..61610738- go_terms:GO:0005515 functional_description:"Translation initiation factor 1a (AHRD V1 *--- Q1HQA3_BOMMO); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0005515 NbS00019662g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.33|1|1|1|3|246|225; (*TAIR) AT5G52980.1 (e_value=3e-70) | Symbols: | CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21482329-21483642 REVERSE LENGTH=222;; (*ITAG) Solyc08g076770.2.1 (e_value=4e-64) genomic_reference:SL2.40ch08 gene_region:57864667-57866130 transcript_region:SL2.40ch08:57864667..57866130- functional_description:"Os02g0225300 protein (Fragment) (AHRD V1 *-*- Q0E2N4_ORYSJ)"; NbS00019662g0007.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|102; (*ITAG) Solyc07g041740.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00017166g0003.1 protein AED:0.43 eAED:0.57 QI:0|0|0|1|0|0|2|0|62 NbS00021274g0020.1 protein AED:0.04 eAED:0.04 QI:193|1|1|1|0.85|0.87|8|558|678; (*TAIR) AT4G37900.1 (e_value=0.0) | Symbols: | Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787;; (*ITAG) Solyc02g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47471715-47476114 transcript_region:SL2.40ch02:47471715..47476114+ functional_description:"Glycine-rich protein (Fragment) (AHRD V1 *--- Q677B7_HYAOR); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00021274g0019.1 protein AED:0.17 eAED:0.17 QI:459|1|1|1|0.8|0.83|6|258|330; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=3e-177) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT4G37920.1 (e_value=2e-178) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120 proteins in 40 species: Archae - 2; Bacteria - 11; Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17828538-17830317 REVERSE LENGTH=427;; (*ITAG) Solyc02g091640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47466448-47471004 transcript_region:SL2.40ch02:47466448..47471004+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00021274g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|230; (*TAIR) AT2G16030.1 (e_value=9e-63) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:6974196-6974891 REVERSE LENGTH=231;; (*ITAG) Solyc02g091600.1.1 (e_value=4e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47434492-47435184 transcript_region:SL2.40ch02:47434492..47435184- functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00021274g0024.1 protein AED:0.21 eAED:0.21 QI:375|0.93|0.93|0.93|0.46|0.43|16|0|839; (*SWP) sp|Q8L4H4|NORK_MEDTR (e_value=0.0) Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2;; (*TAIR) AT2G29000.1 (e_value=2e-93) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:12460781-12465037 FORWARD LENGTH=872;; (*ITAG) Solyc02g091590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47427695-47433832 transcript_region:SL2.40ch02:47427695..47433832- go_terms:GO:0004672,GO:0005515 functional_description:"Receptor kinase (AHRD V1 **** B2C5V6_CASGL); contains Interpro domain(s) IPR017442 Serine/threonine protein kinase-related "; GO:0004672,GO:0005515 NbS00021274g0005.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.2|1|1|5|0|401; (*ITAG) Solyc12g044970.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00021101g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|87; (*SWP) sp|Q42377|EC2_ARATH (e_value=1e-21) EC protein homolog 2 OS=Arabidopsis thaliana GN=At2g23240 PE=2 SV=2;; (*TAIR) AT2G23240.2 (e_value=1e-23) | Symbols: | Plant EC metallothionein-like protein, family 15 | chr2:9895995-9896325 REVERSE LENGTH=84;; (*ITAG) Solyc01g112230.2.1 (e_value=3e-29) genomic_reference:SL2.40ch01 gene_region:90038028-90038636 transcript_region:SL2.40ch01:90038028..90038636- go_terms:GO:0008270 functional_description:"PGPS/NH21 (AHRD V1 **-- Q9ZTM1_PETHY); contains Interpro domain(s) IPR000316 Plant EC metallothionein-like protein, family 15 "; GO:0008270 NbS00021101g0013.1 protein AED:0.30 eAED:0.33 QI:205|0.76|0.61|1|0.76|0.72|18|484|462; (*SWP) sp|Q9XGM8|MGAT1_ARATH (e_value=0.0) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Arabidopsis thaliana GN=GNTI PE=1 SV=1;; (*TAIR) AT4G38240.2 (e_value=0.0) | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative | chr4:17932006-17935209 REVERSE LENGTH=444;; (*ITAG) Solyc01g112240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90039792-90058786 transcript_region:SL2.40ch01:90039792..90058786- go_terms:GO:0003827,GO:0016262 functional_description:"Alpha-1 3-mannosyl-glycoprotein beta-1 2-N-acetylglucosaminyltransferase (AHRD V1 **** Q9ST97_TOBAC); contains Interpro domain(s) IPR004139 Glycosyl transferase, family 13 "; GO:0003827,GO:0016262 NbS00056839g0001.1 protein AED:0.01 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|480; (*SWP) sp|A2WL19|DRE2A_ORYSI (e_value=8e-35) Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2;; (*TAIR) AT2G40340.1 (e_value=6e-35) | Symbols: DREB2C, AtERF48 | Integrase-type DNA-binding superfamily protein | chr2:16848665-16850357 REVERSE LENGTH=341;; (*ITAG) Solyc10g076370.1.1 (e_value=4e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58660798-58662015 transcript_region:SL2.40ch10:58660798..58662015+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00056839g0005.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|414|307; (*TAIR) AT3G08780.2 (e_value=1e-56) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:2666514-2667452 REVERSE LENGTH=312;; (*ITAG) Solyc09g015180.2.1 (e_value=5e-136) genomic_reference:SL2.40ch09 gene_region:8162482-8163827 transcript_region:SL2.40ch09:8162482..8163827+ functional_description:"Os04g0479300 protein (Fragment) (AHRD V1 *-*- Q0JCC9_ORYSJ)"; NbS00009610g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0.66|1|4|479|130; (*TAIR) AT2G37195.1 (e_value=2e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15620370-15621464 FORWARD LENGTH=133;; (*ITAG) Solyc09g007800.2.1 (e_value=1e-59) genomic_reference:SL2.40ch09 gene_region:1320514-1324720 transcript_region:SL2.40ch09:1320514..1324720+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056209g0005.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.33|0|0.33|3|0|87 NbS00056209g0004.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0|2|0|763; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=0.0) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc01g108410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010961g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.83|1|0.6|0.83|6|353|250; (*SWP) sp|Q8LE52|DHAR3_ARATH (e_value=4e-131) Glutathione S-transferase DHAR3, chloroplastic OS=Arabidopsis thaliana GN=DHAR3 PE=1 SV=1;; (*TAIR) AT5G16710.1 (e_value=3e-132) | Symbols: DHAR3 | dehydroascorbate reductase 1 | chr5:5483312-5484926 FORWARD LENGTH=258;; (*ITAG) Solyc11g011250.1.1 (e_value=3e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4291341-4296684 transcript_region:SL2.40ch11:4291341..4296684- functional_description:"Chloride intracellular channel 6 (AHRD V1 ***- B6UCX2_MAIZE); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbC24682834g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|87; (*TAIR) AT3G46920.1 (e_value=1e-36) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr3:17280430-17284857 REVERSE LENGTH=1171;; (*ITAG) Solyc07g007140.2.1 (e_value=3e-48) genomic_reference:SL2.40ch07 gene_region:1889884-1899241 transcript_region:SL2.40ch07:1889884..1899241- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00014365g0002.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|114; (*SWP) sp|Q9ZPX9|KIC_ARATH (e_value=2e-33) Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2;; (*TAIR) AT4G27280.1 (e_value=3e-35) | Symbols: | Calcium-binding EF-hand family protein | chr4:13663770-13664162 REVERSE LENGTH=130;; (*ITAG) Solyc02g079520.1.1 (e_value=5e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:38633386-38633733 transcript_region:SL2.40ch02:38633386..38633733- go_terms:GO:0031683 functional_description:"Calcium-binding EF hand family protein (Fragment) (AHRD V1 **-* D7MEH5_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00011615g0002.1 protein AED:0.80 eAED:0.85 QI:0|0|0|0.5|1|1|2|0|75 NbS00014405g0001.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.5|1|1|1|4|0|788; (*TAIR) AT2G28780.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc11g066140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48915034-48918418 transcript_region:SL2.40ch11:48915034..48918418+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006415g0010.1 protein AED:0.04 eAED:0.04 QI:93|0.66|0.75|1|1|1|4|0|600; (*SWP) sp|O82333|GH31_ARATH (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1;; (*TAIR) AT2G14960.1 (e_value=0.0) | Symbols: GH3.1 | Auxin-responsive GH3 family protein | chr2:6451659-6453670 REVERSE LENGTH=590;; (*ITAG) Solyc01g107390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86709599-86711996 transcript_region:SL2.40ch01:86709599..86711996- functional_description:"Auxin-responsive GH3 product (AHRD V1 ***- Q05680_SOYBN); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; NbS00006415g0011.1 protein AED:0.13 eAED:0.13 QI:151|0.6|0.66|1|0.8|0.83|6|183|385; (*TAIR) AT2G14910.1 (e_value=4e-104) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). | chr2:6406957-6409015 REVERSE LENGTH=386;; (*ITAG) Solyc01g107380.2.1 (e_value=6e-179) genomic_reference:SL2.40ch01 gene_region:86699241-86704780 transcript_region:SL2.40ch01:86699241..86704780- functional_description:"Seed maturation protein PM23 (Fragment) (AHRD V1 ***- Q9SEL1_SOYBN)"; NbS00006415g0012.1 protein AED:0.27 eAED:0.27 QI:161|1|1|1|0.66|0.8|10|0|804; (*TAIR) AT4G34280.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc01g107360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86688549-86696639 transcript_region:SL2.40ch01:86688549..86696639+ go_terms:GO:0000166 functional_description:"Coatomer subunit beta' (AHRD V1 *--- COPB2_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00010517g0010.1 protein AED:0.11 eAED:0.11 QI:277|0.71|0.75|1|0.57|0.75|8|301|649; (*SWP) sp|Q9FPS7|UBP20_ARATH (e_value=8e-89) Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1;; (*TAIR) AT4G17895.1 (e_value=6e-90) | Symbols: UBP20 | ubiquitin-specific protease 20 | chr4:9939914-9942698 FORWARD LENGTH=695;; (*ITAG) Solyc08g076910.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57998077-58002392 transcript_region:SL2.40ch08:57998077..58002392- go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- B9N2M4_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbC25501985g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|0|2|0|186; (*SWP) sp|Q94J16|HFA4B_ORYSJ (e_value=1e-27) Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1;; (*TAIR) AT1G32330.1 (e_value=1e-22) | Symbols: ATHSFA1D, HSFA1D | heat shock transcription factor A1D | chr1:11657265-11660234 REVERSE LENGTH=485;; (*ITAG) Solyc07g055710.2.1 (e_value=2e-65) genomic_reference:SL2.40ch07 gene_region:60972388-60973952 transcript_region:SL2.40ch07:60972388..60973952- go_terms:GO:0003677 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00004061g0004.1 protein AED:0.32 eAED:0.35 QI:813|0|0.25|1|0.33|0.5|4|0|93; (*ITAG) Solyc02g091230.2.1 (e_value=6e-15) genomic_reference:SL2.40ch02 gene_region:47173853-47176291 transcript_region:SL2.40ch02:47173853..47176291- go_terms:GO:0005515,GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH2 (AHRD V1 *--* B5XFT2_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515,GO:0004842 NbS00004061g0005.1 protein AED:0.55 eAED:0.80 QI:0|0|0|1|0|0.5|2|0|89; (*SWP) sp|O74940|NADE_SCHPO (e_value=9e-15) Putative glutamine-dependent NAD(+) synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.02 PE=2 SV=1;; (*TAIR) AT1G55090.1 (e_value=2e-25) | Symbols: | carbon-nitrogen hydrolase family protein | chr1:20554857-20558188 FORWARD LENGTH=725;; (*ITAG) Solyc08g082830.2.1 (e_value=6e-27) genomic_reference:SL2.40ch08 gene_region:62660064-62668736 transcript_region:SL2.40ch08:62660064..62668736- go_terms:GO:0042802 functional_description:"NH(3)-dependent NAD(+) synthetase (AHRD V1 ***- A1ZGC5_9BACT); contains Interpro domain(s) IPR014445 Glutamine-dependent NAD(+) synthetase, GAT region "; GO:0042802 NbS00004061g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|460; (*SWP) sp|O22820|U74F1_ARATH (e_value=3e-150) UDP-glycosyltransferase 74F1 OS=Arabidopsis thaliana GN=UGT74F1 PE=1 SV=1;; (*TAIR) AT2G43840.2 (e_value=2e-152) | Symbols: UGT74F1 | UDP-glycosyltransferase 74 F1 | chr2:18157681-18159166 FORWARD LENGTH=449;; (*ITAG) Solyc08g006410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1011690-1013594 transcript_region:SL2.40ch08:1011690..1013594+ go_terms:GO:0080002 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 **** B6EWX8_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00004061g0110.1 protein AED:0.13 eAED:0.13 QI:429|0.66|0.75|1|0|0.25|4|411|367 NbS00061418g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.66|0.83|1|1|6|203|251; (*SWP) sp|Q02585|UCRIB_TOBAC (e_value=5e-131) Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1;; (*TAIR) AT4G03280.1 (e_value=2e-101) | Symbols: PETC, PGR1 | photosynthetic electron transfer C | chr4:1440314-1441717 FORWARD LENGTH=229;; (*ITAG) Solyc12g005630.1.1 (e_value=5e-118) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:334079-336443 transcript_region:SL2.40ch12:334079..336443- go_terms:GO:0016020,GO:0042651,GO:0031177,GO:0055114 functional_description:"Cytochrome b6-f complex iron-sulfur subunit (AHRD V1 ***- A9PEX3_POPTR); contains Interpro domain(s) IPR005805 Rieske iron-sulphur protein, C-terminal "; GO:0016020,GO:0042651,GO:0031177,GO:0055114 NbS00023935g0006.1 protein AED:0.20 eAED:0.20 QI:198|1|1|1|0.71|0.5|8|253|221; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=3e-142) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.1 (e_value=2e-143) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215;; (*ITAG) Solyc09g007830.2.1 (e_value=4e-150) genomic_reference:SL2.40ch09 gene_region:1356808-1361135 transcript_region:SL2.40ch09:1356808..1361135- go_terms:GO:0016831 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831 NbS00044364g0001.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|0.33|0.5|4|849|435; (*SWP) sp|Q9ZUE9|PP149_ARATH (e_value=6e-142) Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1;; (*TAIR) AT2G06000.2 (e_value=5e-143) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:2328000-2329610 REVERSE LENGTH=536;; (*ITAG) Solyc01g104630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84820987-84826024 transcript_region:SL2.40ch01:84820987..84826024- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L9C2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00015938g0004.1 protein AED:0.08 eAED:0.08 QI:163|1|1|1|1|1|4|506|456; (*TAIR) AT3G06080.2 (e_value=1e-178) | Symbols: | Plant protein of unknown function (DUF828) | chr3:1834959-1837524 REVERSE LENGTH=469;; (*ITAG) Solyc06g084290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45765445-45770016 transcript_region:SL2.40ch06:45765445..45770016- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00008666g0006.1 protein AED:0.09 eAED:0.09 QI:110|1|1|1|0.66|0.75|4|445|192; (*TAIR) AT1G08380.1 (e_value=2e-68) | Symbols: PSAO | photosystem I subunit O | chr1:2641004-2641739 REVERSE LENGTH=140;; (*ITAG) Solyc06g074200.2.1 (e_value=7e-80) genomic_reference:SL2.40ch06 gene_region:42266515-42267823 transcript_region:SL2.40ch06:42266515..42267823- functional_description:"Sex-linked protein 9 (Fragment) (AHRD V1 ***- D7RW11_SILCU); contains Interpro domain(s) IPR017498 Photosystem I PsaO "; NbS00008666g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|0.75|4|0|218; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=5e-52) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2;; (*TAIR) AT1G08370.1 (e_value=4e-53) | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367;; (*ITAG) Solyc06g074210.2.1 (e_value=1e-78) genomic_reference:SL2.40ch06 gene_region:42268413-42276417 transcript_region:SL2.40ch06:42268413..42276417- functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; NbS00054610g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|71; (*SWP) sp|Q0WKV3|PPR36_ARATH (e_value=2e-15) Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1;; (*TAIR) AT1G63230.1 (e_value=3e-17) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23451144-23452201 FORWARD LENGTH=323;; (*ITAG) Solyc06g007740.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00026306g0001.1 protein AED:0.11 eAED:0.11 QI:170|0.25|0.2|1|1|1|5|0|616; (*SWP) sp|O32164|CSD_BACSU (e_value=9e-18) Probable cysteine desulfurase OS=Bacillus subtilis (strain 168) GN=csd PE=3 SV=1;; (*ITAG) Solyc11g005860.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:687944-690811 transcript_region:SL2.40ch11:687944..690811+ go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase (AHRD V1 **-- A4A4I5_9GAMM); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00026306g0005.1 protein AED:0.50 eAED:0.55 QI:0|0.25|0|0.8|0.5|0.6|5|0|142; (*ITAG) Solyc11g005870.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:691719-702561 transcript_region:SL2.40ch11:691719..702561- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00012412g0006.1 protein AED:0.19 eAED:0.19 QI:4|1|0.5|1|1|1|2|0|147; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=3e-51) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT2G03350.1 (e_value=2e-78) | Symbols: | Protein of unknown function, DUF538 | chr2:1019733-1021071 REVERSE LENGTH=179;; (*ITAG) Solyc03g115640.2.1 (e_value=2e-95) genomic_reference:SL2.40ch03 gene_region:59336449-59338341 transcript_region:SL2.40ch03:59336449..59338341+ functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00010950g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|156 NbS00010950g0018.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.75|1|0.57|0.75|8|193|482; (*SWP) sp|Q9ZPV5|NOC2L_ARATH (e_value=2e-86) Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2;; (*TAIR) AT3G55510.1 (e_value=2e-158) | Symbols: RBL | Noc2p family | chr3:20579232-20582124 FORWARD LENGTH=594;; (*ITAG) Solyc05g023710.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29024158-29035186 transcript_region:SL2.40ch05:29024158..29035186+ functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; NbS00010950g0004.1 protein AED:0.51 eAED:0.51 QI:233|0|0.25|0.5|1|1|4|0|191; (*ITAG) Solyc05g023710.2.1 (e_value=2e-24) genomic_reference:SL2.40ch05 gene_region:29024158-29035186 transcript_region:SL2.40ch05:29024158..29035186+ functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; NbS00010950g0010.1 protein AED:0.64 eAED:0.66 QI:0|0|0|0.33|1|1|3|0|117; (*ITAG) Solyc05g023710.2.1 (e_value=1e-45) genomic_reference:SL2.40ch05 gene_region:29024158-29035186 transcript_region:SL2.40ch05:29024158..29035186+ functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; NbS00010950g0113.1 protein AED:0.00 eAED:0.00 QI:72|1|0|1|1|1|2|0|63 NbS00010950g0111.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|87 NbS00010950g0116.1 protein AED:0.33 eAED:0.33 QI:65|0.16|0.14|0.42|0.66|0.71|7|0|140 NbS00010950g0110.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|1|2|0|223 NbS00010950g0216.1 protein AED:0.01 eAED:0.01 QI:771|0.6|0.66|0.83|0.6|0.5|6|0|327 NbS00010950g0217.1 protein AED:0.47 eAED:0.73 QI:0|0|0|0.2|0.88|0.9|10|0|322 NbS00014927g0006.1 protein AED:0.09 eAED:0.09 QI:206|0.66|0.5|1|1|1|4|0|124; (*SWP) sp|Q86K94|TPPC3_DICDI (e_value=5e-46) Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2;; (*TAIR) AT5G54750.1 (e_value=1e-71) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc10g006490.2.1 (e_value=9e-81) genomic_reference:SL2.40ch10 gene_region:1075550-1079615 transcript_region:SL2.40ch10:1075550..1079615+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6T6G9_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00043702g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|171; (*SWP) sp|P33080|AX10A_SOYBN (e_value=2e-16) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=6e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc08g079140.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59955431-59955877 transcript_region:SL2.40ch08:59955431..59955877+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *-*- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00057575g0004.1 protein AED:0.31 eAED:0.31 QI:157|0.81|0.83|1|0.72|0.75|12|268|368; (*SWP) sp|Q9Y383|LC7L2_HUMAN (e_value=1e-37) Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2;; (*TAIR) AT3G03340.1 (e_value=1e-136) | Symbols: UNE6 | LUC7 related protein | chr3:786439-789762 FORWARD LENGTH=402;; (*ITAG) Solyc05g056280.2.1 (e_value=6e-161) genomic_reference:SL2.40ch05 gene_region:64772180-64781152 transcript_region:SL2.40ch05:64772180..64781152+ go_terms:GO:0003729 functional_description:"RNA-binding protein Luc7-like 2 (AHRD V1 **** B6TXA2_MAIZE); contains Interpro domain(s) IPR004882 LUC7 related "; GO:0003729 NbS00000718g0005.1 protein AED:0.19 eAED:0.19 QI:339|0.5|0.6|1|1|1|5|386|289; (*SWP) sp|P0C8Z0|Y8359_ORYSI (e_value=2e-30) Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2;; (*TAIR) AT4G02450.2 (e_value=2e-22) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc04g072160.2.1 (e_value=8e-73) genomic_reference:SL2.40ch04 gene_region:56774062-56776799 transcript_region:SL2.40ch04:56774062..56776799- functional_description:"Prostaglandin E synthase 3 (AHRD V1 **-- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00000718g0013.1 protein AED:0.25 eAED:0.25 QI:0|1|0.66|1|1|1|3|0|257; (*SWP) sp|Q8VYI1|SBH1_ARATH (e_value=6e-111) Sphingoid base hydroxylase 1 OS=Arabidopsis thaliana GN=SBH1 PE=2 SV=1;; (*TAIR) AT1G69640.1 (e_value=4e-112) | Symbols: SBH1 | sphingoid base hydroxylase 1 | chr1:26193933-26195466 REVERSE LENGTH=260;; (*ITAG) Solyc05g007460.2.1 (e_value=8e-119) genomic_reference:SL2.40ch05 gene_region:2030433-2034096 transcript_region:SL2.40ch05:2030433..2034096+ go_terms:GO:0000170 functional_description:"Sphingosine hydroxylase (AHRD V1 **-* A8N9Q2_COPC7); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000170 NbS00000718g0018.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|0.33|0.5|16|199|428; (*SWP) sp|Q3SX07|PUS3_BOVIN (e_value=9e-90) tRNA pseudouridine(38/39) synthase OS=Bos taurus GN=PUS3 PE=2 SV=1;; (*TAIR) AT1G34150.1 (e_value=6e-161) | Symbols: | Pseudouridine synthase family protein | chr1:12436086-12439237 FORWARD LENGTH=446;; (*ITAG) Solyc04g072140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56758720-56766948 transcript_region:SL2.40ch04:56758720..56766948+ go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase (AHRD V1 **** C1GUB7_PARBA); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00000718g0004.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|574; (*SWP) sp|Q9FX24|PPR71_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2;; (*TAIR) AT1G34160.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:12441393-12443225 FORWARD LENGTH=581;; (*ITAG) Solyc04g072170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56779293-56781017 transcript_region:SL2.40ch04:56779293..56781017+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJF2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00000718g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|715; (*SWP) sp|B3H672|PP317_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g17616 OS=Arabidopsis thaliana GN=At4g17616 PE=2 SV=1;; (*TAIR) AT4G17616.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:9819608-9821632 FORWARD LENGTH=674;; (*ITAG) Solyc04g072150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56770029-56772164 transcript_region:SL2.40ch04:56770029..56772164+ functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011530g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|811; (*SWP) sp|Q96372|CDC48_CAPAN (e_value=0.0) Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00011530g0020.1 protein AED:0.16 eAED:0.16 QI:887|0.5|0.6|1|0.25|0.2|5|601|735; (*SWP) sp|Q68F64|UN45B_XENLA (e_value=5e-12) Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=4e-154) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc07g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2125803-2128660 transcript_region:SL2.40ch07:2125803..2128660+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011530g0018.1 protein AED:0.18 eAED:1.00 QI:7|1|0|1|0|0|2|0|41 NbS00011530g0023.1 protein AED:0.14 eAED:0.14 QI:228|0.6|0.83|1|0.4|0.16|6|578|84; (*ITAG) Solyc03g025980.2.1 (e_value=2e-26) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00011530g0013.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.33|1|1|3|0|182; (*SWP) sp|P75330|P30_MYCPN (e_value=5e-19) P30 adhesin OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=p30 PE=4 SV=1; NbS00011530g0022.1 protein AED:0.31 eAED:0.31 QI:0|0.85|0.75|0.87|0.85|0.87|8|777|284; (*SWP) sp|Q3MHX6|OS9_BOVIN (e_value=4e-24) Protein OS-9 OS=Bos taurus GN=OS9 PE=2 SV=1;; (*TAIR) AT5G35080.1 (e_value=2e-97) | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13354552-13356725 REVERSE LENGTH=282;; (*ITAG) Solyc07g007380.2.1 (e_value=8e-155) genomic_reference:SL2.40ch07 gene_region:2112949-2118856 transcript_region:SL2.40ch07:2112949..2118856- go_terms:GO:0001948 functional_description:"Endoplasmic reticulum lectin 1 (AHRD V1 **-- ERLEC_MOUSE); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0001948 NbS00011530g0021.1 protein AED:0.35 eAED:0.58 QI:0|0|0.25|1|0.66|0.5|4|314|226; (*ITAG) Solyc07g007380.2.1 (e_value=3e-28) genomic_reference:SL2.40ch07 gene_region:2112949-2118856 transcript_region:SL2.40ch07:2112949..2118856- go_terms:GO:0001948 functional_description:"Endoplasmic reticulum lectin 1 (AHRD V1 **-- ERLEC_MOUSE); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0001948 NbS00005599g0012.1 protein AED:0.20 eAED:0.22 QI:0|0.62|0.33|1|1|1|9|0|1728; (*TAIR) AT3G50370.1 (e_value=2e-97) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbS00005599g0004.1 protein AED:0.38 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|691; (*TAIR) AT3G50370.1 (e_value=1e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbS00005599g0013.1 protein AED:0.02 eAED:0.02 QI:625|1|0.5|1|1|1|2|0|495; (*SWP) sp|Q3V050|S47A2_MOUSE (e_value=8e-62) Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1;; (*TAIR) AT1G58340.1 (e_value=4e-152) | Symbols: ZF14 | MATE efflux family protein | chr1:21653162-21655117 FORWARD LENGTH=532;; (*ITAG) Solyc02g090740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46831268-46833073 transcript_region:SL2.40ch02:46831268..46833073- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PHOLL); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00005599g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|226; (*SWP) sp|P93007|EF112_ARATH (e_value=2e-28) Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1;; (*TAIR) AT2G33710.1 (e_value=2e-29) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:14259271-14260652 REVERSE LENGTH=218;; (*ITAG) Solyc02g090770.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46858589-46859200 transcript_region:SL2.40ch02:46858589..46859200- go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00005599g0019.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.42|0.85|0.5|0.71|7|270|222; (*TAIR) AT4G37020.1 (e_value=7e-73) | Symbols: | BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17445778-17447135 FORWARD LENGTH=212;; (*ITAG) Solyc02g090750.2.1 (e_value=8e-98) genomic_reference:SL2.40ch02 gene_region:46838035-46842708 transcript_region:SL2.40ch02:46838035..46842708- functional_description:"ATP-dependent RNA helicase fal1 (AHRD V1 ***- B2WHT2_PYRTR)"; NbS00013295g0009.1 protein AED:0.20 eAED:0.20 QI:190|1|1|1|0.5|0.6|5|179|422; (*SWP) sp|Q9HDV0|YHE5_SCHPO (e_value=1e-18) Putative glutamine amidotransferase PB2B2.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB2B2.05 PE=2 SV=1;; (*TAIR) AT5G38200.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc02g086300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43573059-43575024 transcript_region:SL2.40ch02:43573059..43575024- go_terms:GO:0006541 functional_description:"Glutamine amidotransferase (AHRD V1 *-*- C6YZA6_9BACE); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00013295g0012.1 protein AED:0.30 eAED:0.32 QI:20|0.66|0.57|1|0.66|0.71|7|0|386; (*TAIR) AT2G01260.1 (e_value=5e-109) | Symbols: | Protein of unknown function (DUF789) | chr2:135494-137504 REVERSE LENGTH=369;; (*ITAG) Solyc05g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00031325g0007.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0.25|4|0|537; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=9e-76) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=4e-53) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g106410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00031325g0005.1 protein AED:0.16 eAED:0.16 QI:196|1|0.66|1|1|1|3|0|174; (*SWP) sp|Q9C5C8|MSRB2_ARATH (e_value=5e-76) Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1;; (*TAIR) AT4G21860.3 (e_value=4e-77) | Symbols: MSRB2 | methionine sulfoxide reductase B 2 | chr4:11600238-11601507 REVERSE LENGTH=202;; (*ITAG) Solyc01g106400.2.1 (e_value=6e-101) genomic_reference:SL2.40ch01 gene_region:86070052-86071107 transcript_region:SL2.40ch01:86070052..86071107+ go_terms:GO:0055114 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 ***- B6T2C6_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0055114 NbS00031325g0006.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|0|0|2|0|221; (*ITAG) Solyc01g106410.1.1 (e_value=2e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00039572g0102.1 protein AED:0.33 eAED:0.33 QI:268|1|0.75|1|0.66|0.75|4|0|215 NbS00039572g0111.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.77|1|0.25|0.22|9|276|448 NbS00030802g0003.1 protein AED:0.08 eAED:0.08 QI:409|1|1|1|0|0.33|3|167|500; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=2e-108) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT4G02670.1 (e_value=7e-112) | Symbols: AtIDD12, IDD12 | indeterminate(ID)-domain 12 | chr4:1176190-1178489 REVERSE LENGTH=402;; (*ITAG) Solyc09g065670.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59497857-59502755 transcript_region:SL2.40ch09:59497857..59502755+ go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MN23_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00016077g0004.1 protein AED:0.14 eAED:0.23 QI:0|0|0|0.66|0|0.33|3|0|205; (*ITAG) Solyc09g072640.2.1 (e_value=7e-31) genomic_reference:SL2.40ch09 gene_region:60756145-60757550 transcript_region:SL2.40ch09:60756145..60757550- functional_description:"Rop-interactive crib motif-containing protein 1 (AHRD V1 *--- D7LGA6_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00016077g0003.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|4|0|519; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=1e-38) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT4G28560.1 (e_value=3e-78) | Symbols: RIC7 | ROP-interactive CRIB motif-containing protein 7 | chr4:14116015-14117367 REVERSE LENGTH=450;; (*ITAG) Solyc09g072630.2.1 (e_value=8e-139) genomic_reference:SL2.40ch09 gene_region:60754393-60756538 transcript_region:SL2.40ch09:60754393..60756538+ go_terms:GO:0005515,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0004675 NbS00022086g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|139; (*SWP) sp|Q6K8R2|CHI6_ORYSJ (e_value=2e-61) Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1;; (*TAIR) AT3G54420.1 (e_value=1e-59) | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of carrot EP3-3 chitinase | chr3:20145935-20147034 FORWARD LENGTH=273;; (*ITAG) Solyc06g053380.2.1 (e_value=1e-76) genomic_reference:SL2.40ch06 gene_region:32618593-32620289 transcript_region:SL2.40ch06:32618593..32620289- go_terms:GO:0008843 functional_description:"Chitinase (AHRD V1 ***- D0QU15_LACSA); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0008843 NbS00022086g0009.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|1|4|281|170; (*SWP) sp|O04421|SRP14_ARATH (e_value=2e-36) Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2;; (*TAIR) AT2G43640.2 (e_value=1e-37) | Symbols: | Signal recognition particle, SRP9/SRP14 subunit | chr2:18097614-18098619 REVERSE LENGTH=121; NbS00022086g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|136; (*SWP) sp|O04138|CHI4_ORYSJ (e_value=4e-57) Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2;; (*TAIR) AT3G54420.1 (e_value=1e-55) | Symbols: ATEP3, ATCHITIV, CHIV, EP3 | homolog of carrot EP3-3 chitinase | chr3:20145935-20147034 FORWARD LENGTH=273;; (*ITAG) Solyc04g072000.2.1 (e_value=5e-75) genomic_reference:SL2.40ch04 gene_region:56659743-56661631 transcript_region:SL2.40ch04:56659743..56661631- go_terms:GO:0008843 functional_description:"Chitinase (AHRD V1 ***- D0QU15_LACSA); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 "; GO:0008843 NbS00043170g0004.1 protein AED:0.17 eAED:0.19 QI:0|1|0.5|1|1|0.75|4|0|686; (*SWP) sp|Q9LUB9|Y5813_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130 PE=2 SV=1;; (*TAIR) AT5G48130.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:19516291-19518450 FORWARD LENGTH=625;; (*ITAG) Solyc07g048000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56527164-56530194 transcript_region:SL2.40ch07:56527164..56530194+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 (AHRD V1 **-- D9ZHC8_HYPPE); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00010854g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0.8|1|1|0.8|5|296|301; (*SWP) sp|Q9LK03|PERK2_ARATH (e_value=3e-56) Proline-rich receptor-like protein kinase PERK2 OS=Arabidopsis thaliana GN=PERK2 PE=2 SV=3;; (*TAIR) AT5G37790.1 (e_value=4e-154) | Symbols: | Protein kinase superfamily protein | chr5:15008433-15011025 REVERSE LENGTH=552;; (*ITAG) Solyc02g063330.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29975679-29978433 transcript_region:SL2.40ch02:29975679..29978433+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 *-** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00023636g0004.1 protein AED:0.00 eAED:0.00 QI:146|1|1|1|1|1|2|494|119; (*ITAG) Solyc10g045320.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:28165195-28166785 transcript_region:SL2.40ch10:28165195..28166785+ functional_description:"Citrate synthase (AHRD V1 ***- A5AGI7_VITVI)"; NbS00061755g0001.1 protein AED:0.30 eAED:0.31 QI:292|0|0.5|1|0|0.5|2|0|348 NbS00061755g0003.1 protein AED:0.55 eAED:0.69 QI:0|0|0|0.66|1|1|3|0|68 NbC25904657g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|1053|121; (*TAIR) AT5G04895.1 (e_value=3e-51) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00011062g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|156; (*ITAG) Solyc06g033980.2.1 (e_value=3e-27) genomic_reference:SL2.40ch06 gene_region:20163363-20164580 transcript_region:SL2.40ch06:20163363..20164580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HUA4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00005803g0004.1 protein AED:0.35 eAED:0.41 QI:0|0|0|1|1|1|2|0|72; (*ITAG) Solyc11g050700.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:40567171-40568610 transcript_region:SL2.40ch11:40567171..40568610- functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00005803g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|726; (*SWP) sp|Q9SIM9|ORE9_ARATH (e_value=0.0) F-box protein ORE9 OS=Arabidopsis thaliana GN=ORE9 PE=1 SV=2;; (*TAIR) AT2G42620.1 (e_value=0.0) | Symbols: MAX2, ORE9, PPS | RNI-like superfamily protein | chr2:17756170-17758251 FORWARD LENGTH=693;; (*ITAG) Solyc12g010900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3807527-3809695 transcript_region:SL2.40ch12:3807527..3809695+ functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00005803g0006.1 protein AED:0.27 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|76 NbS00005803g0013.1 protein AED:0.02 eAED:0.06 QI:0|0|0|1|0|0|4|0|505; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=4e-168) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=3e-169) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc12g010910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3811811-3813376 transcript_region:SL2.40ch12:3811811..3813376- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00059970g0001.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.83|1|1|1|6|215|408; (*SWP) sp|P37272|PSY_CAPAN (e_value=0.0) Phytoene synthase, chloroplastic OS=Capsicum annuum GN=PSY1 PE=2 SV=1;; (*TAIR) AT5G17230.2 (e_value=0.0) | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659839-5662087 REVERSE LENGTH=422;; (*ITAG) Solyc03g031860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8606368-8610361 transcript_region:SL2.40ch03:8606368..8610361+ go_terms:GO:0046905,GO:0016767 functional_description:"Phytoene synthase 1"; GO:0046905,GO:0016767 NbS00019785g0011.1 protein AED:0.11 eAED:0.11 QI:473|0.83|0.76|1|0.75|0.84|13|530|508; (*SWP) sp|Q67XQ0|Y4424_ARATH (e_value=0.0) DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1;; (*TAIR) AT4G14240.1 (e_value=0.0) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr4:8204712-8207273 REVERSE LENGTH=494;; (*ITAG) Solyc01g080160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71859758-71868013 transcript_region:SL2.40ch01:71859758..71868013+ functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00019785g0009.1 protein AED:0.20 eAED:0.20 QI:252|0.5|0.6|1|0.5|0.6|5|378|346; (*TAIR) AT3G06170.1 (e_value=8e-129) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:1867520-1869738 FORWARD LENGTH=409;; (*ITAG) Solyc06g054420.2.1 (e_value=3e-147) genomic_reference:SL2.40ch06 gene_region:33686493-33691284 transcript_region:SL2.40ch06:33686493..33691284+ go_terms:GO:0005515,GO:0015194 functional_description:"Serine incorporator 1 (AHRD V1 **** B5DGK4_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0005515,GO:0015194 NbS00019785g0007.1 protein AED:0.22 eAED:0.22 QI:100|1|0.75|1|0.33|0.5|4|0|171; (*TAIR) AT5G19030.1 (e_value=2e-28) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6357503-6359081 REVERSE LENGTH=172;; (*ITAG) Solyc06g054380.2.1 (e_value=2e-70) genomic_reference:SL2.40ch06 gene_region:33658060-33660389 transcript_region:SL2.40ch06:33658060..33660389+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *-*- Q941H9_TOBAC); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00004424g0001.1 protein AED:0.01 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|406; (*SWP) sp|Q5XF85|ATL42_ARATH (e_value=3e-113) E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2;; (*TAIR) AT4G28890.1 (e_value=3e-114) | Symbols: | RING/U-box superfamily protein | chr4:14256437-14257735 REVERSE LENGTH=432;; (*ITAG) Solyc05g018310.1.1 (e_value=2e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:20435653-20436627 transcript_region:SL2.40ch05:20435653..20436627- go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00004424g0012.1 protein AED:0.19 eAED:0.20 QI:331|0.75|0.6|1|0.75|0.6|5|0|499; (*SWP) sp|Q8GW61|STP14_ARATH (e_value=0.0) Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2;; (*TAIR) AT1G77210.2 (e_value=0.0) | Symbols: STP14 | sugar transporter 14 | chr1:29009036-29010980 REVERSE LENGTH=504;; (*ITAG) Solyc12g008320.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1732691-1736090 transcript_region:SL2.40ch12:1732691..1736090+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00004424g0009.1 protein AED:0.11 eAED:0.11 QI:0|0.8|0.66|0.83|1|1|6|205|875; (*SWP) sp|Q9SL79|CAF1P_ARATH (e_value=0.0) CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2;; (*TAIR) AT2G20020.1 (e_value=0.0) | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr2:8644464-8647090 FORWARD LENGTH=701;; (*ITAG) Solyc05g018240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20269261-20278992 transcript_region:SL2.40ch05:20269261..20278992- go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00037639g0004.1 protein AED:0.31 eAED:0.38 QI:90|0.83|0.71|1|0.66|0.85|7|0|249; (*TAIR) AT3G01410.2 (e_value=5e-43) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:153650-155439 REVERSE LENGTH=294;; (*ITAG) Solyc02g087130.2.1 (e_value=2e-94) genomic_reference:SL2.40ch02 gene_region:44207285-44214013 transcript_region:SL2.40ch02:44207285..44214013+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- C3JIP8_RHOER); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00003269g0015.1 protein AED:0.16 eAED:0.18 QI:0|0|0|0.33|0.5|0.66|3|0|506; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=2e-31) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50150.1 (e_value=6e-49) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18595809-18597551 REVERSE LENGTH=509;; (*ITAG) Solyc04g008910.1.1 (e_value=7e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2519306-2528011 transcript_region:SL2.40ch04:2519306..2528011- functional_description:"Fgenesh protein 60 (AHRD V1 *--- Q1ZY19_BETVU); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00003269g0019.1 protein AED:0.03 eAED:0.03 QI:24|0.33|0|0.5|1|1|4|0|431; (*SWP) sp|P22200|KPYC_SOLTU (e_value=0.0) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=0.0) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00003269g0011.1 protein AED:0.29 eAED:0.29 QI:0|0.86|0.83|1|0.91|0.87|24|420|599; (*SWP) sp|Q42656|AGAL_COFAR (e_value=9e-149) Alpha-galactosidase OS=Coffea arabica PE=1 SV=1;; (*TAIR) AT5G08380.1 (e_value=7e-170) | Symbols: AtAGAL1, AGAL1 | alpha-galactosidase 1 | chr5:2694851-2697616 REVERSE LENGTH=410;; (*ITAG) Solyc04g008730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2393747-2398009 transcript_region:SL2.40ch04:2393747..2398009- go_terms:GO:0004557,GO:0008456 functional_description:"Alpha-galactosidase 1 (AHRD V1 **** Q5ZP79_PEA); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557,GO:0008456 NbS00003269g0014.1 protein AED:0.45 eAED:0.60 QI:0|0|0|1|0|0|2|0|91; (*ITAG) Solyc04g008900.2.1 (e_value=7e-17) genomic_reference:SL2.40ch04 gene_region:2511229-2514610 transcript_region:SL2.40ch04:2511229..2514610- functional_description:"Fgenesh protein 60 (AHRD V1 **-- Q1ZY19_BETVU); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00008731g0001.1 protein AED:0.04 eAED:0.05 QI:578|1|0.5|1|0|0|2|0|792; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g080430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61028914-61031238 transcript_region:SL2.40ch10:61028914..61031238- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00034736g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.25|0.2|0.4|1|1|5|7|304; (*TAIR) AT5G28350.1 (e_value=7e-115) | Symbols: | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | chr5:10320301-10326781 FORWARD LENGTH=1127;; (*ITAG) Solyc01g094880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78036956-78052159 transcript_region:SL2.40ch01:78036956..78052159+ functional_description:"Protein RIC1 homolog (AHRD V1 **-- RIC1_MOUSE); contains Interpro domain(s) IPR009771 Protein of unknown function DUF1339 "; NbS00034736g0007.1 protein AED:0.20 eAED:0.36 QI:0|0|0|1|0|0|4|0|197; (*TAIR) AT4G23470.3 (e_value=1e-26) | Symbols: | PLAC8 family protein | chr4:12249289-12251079 FORWARD LENGTH=233;; (*ITAG) Solyc12g056210.1.1 (e_value=1e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47526767-47531237 transcript_region:SL2.40ch12:47526767..47531237- functional_description:"MRNA clone RAFL21-79-C21 (AHRD V1 **-- Q8W458_ARATH); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00009551g0004.1 protein AED:0.10 eAED:0.10 QI:228|0.85|0.87|1|0.42|0.62|8|274|446; (*SWP) sp|Q9FEL6|LAX3_MEDTR (e_value=0.0) Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1;; (*TAIR) AT1G77690.1 (e_value=0.0) | Symbols: LAX3 | like AUX1 3 | chr1:29201232-29203317 REVERSE LENGTH=470;; (*ITAG) Solyc11g013310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6271845-6276669 transcript_region:SL2.40ch11:6271845..6276669+ functional_description:"Auxin transporter-like protein 3 (AHRD V1 ***- B6TPT6_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00061760g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|446; (*SWP) sp|Q9SNC3|FLA4_ARATH (e_value=3e-123) Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1;; (*TAIR) AT3G46550.1 (e_value=2e-124) | Symbols: SOS5 | Fasciclin-like arabinogalactan family protein | chr3:17136612-17137874 REVERSE LENGTH=420;; (*ITAG) Solyc03g112880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57222149-57223432 transcript_region:SL2.40ch03:57222149..57223432- go_terms:GO:0005515,GO:0030247 functional_description:"Fasciclin-like arabinogalactan protein 9 (AHRD V1 ***- A9XTL4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005515,GO:0030247 NbS00026044g0003.1 protein AED:0.06 eAED:0.08 QI:0|0|0|0.66|1|1|3|0|276; (*SWP) sp|Q84W66|NFYB6_ARATH (e_value=6e-58) Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2;; (*TAIR) AT5G47670.2 (e_value=2e-59) | Symbols: NF-YB6, L1L | nuclear factor Y, subunit B6 | chr5:19315358-19315975 FORWARD LENGTH=205;; (*ITAG) Solyc10g009440.2.1 (e_value=6e-84) genomic_reference:SL2.40ch10 gene_region:3535781-3537995 transcript_region:SL2.40ch10:3535781..3537995- go_terms:GO:0016563 functional_description:"Nuclear transcription factor Y subunit B-6 (AHRD V1 *-** B6UH02_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0016563 NbS00026044g0005.1 protein AED:0.16 eAED:0.16 QI:67|1|1|1|1|1|3|440|345; (*SWP) sp|O14214|TRM10_SCHPO (e_value=8e-45) tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1;; (*TAIR) AT5G47680.1 (e_value=2e-111) | Symbols: TRM10, AtTRM | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19316329-19317467 REVERSE LENGTH=344;; (*ITAG) Solyc11g012760.1.1 (e_value=3e-164) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5519964-5522711 transcript_region:SL2.40ch11:5519964..5522711- functional_description:"TRNA (Guanine-N1-)-methyltransferase (AHRD V1 ***- A2Q1R6_MEDTR); contains Interpro domain(s) IPR016653 tRNA (guanine-N(1)-)-methyltransferase, metazoa "; NbS00027284g0007.1 protein AED:0.30 eAED:0.26 QI:19|1|0.88|1|0.87|1|9|25|308; (*TAIR) AT3G51610.1 (e_value=2e-108) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:19139715-19141986 REVERSE LENGTH=230;; (*ITAG) Solyc03g118520.2.1 (e_value=1e-52) genomic_reference:SL2.40ch03 gene_region:61422856-61423498 transcript_region:SL2.40ch03:61422856..61423498+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021802g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.4|1|1|0.6|5|0|319; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=7e-106) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=5e-107) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094210.2.1 (e_value=1e-147) genomic_reference:SL2.40ch01 gene_region:77532371-77534840 transcript_region:SL2.40ch01:77532371..77534840+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00002202g0005.1 protein AED:0.06 eAED:0.06 QI:272|0.71|0.75|1|0.71|0.75|8|665|415; (*SWP) sp|Q8RXC8|RBK2_ARATH (e_value=1e-115) Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana GN=RBK2 PE=1 SV=1;; (*TAIR) AT5G35960.1 (e_value=2e-138) | Symbols: | Protein kinase family protein | chr5:14108524-14110536 REVERSE LENGTH=429;; (*ITAG) Solyc09g074250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61525297-61527952 transcript_region:SL2.40ch09:61525297..61527952+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM42_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00002202g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|394; (*SWP) sp|Q42371|ERECT_ARATH (e_value=4e-29) LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1;; (*TAIR) AT4G03010.1 (e_value=0.0) | Symbols: | RNI-like superfamily protein | chr4:1329952-1331139 FORWARD LENGTH=395;; (*ITAG) Solyc09g074260.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61545119-61546306 transcript_region:SL2.40ch09:61545119..61546306+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00028915g0014.1 protein AED:0.24 eAED:0.24 QI:142|0|0.33|1|0|0.33|3|0|178; (*SWP) sp|Q9SUI4|PSAL_ARATH (e_value=7e-75) Photosystem I reaction center subunit XI, chloroplastic OS=Arabidopsis thaliana GN=PSAL PE=1 SV=2;; (*TAIR) AT4G12800.1 (e_value=5e-76) | Symbols: PSAL | photosystem I subunit l | chr4:7521469-7522493 FORWARD LENGTH=219;; (*ITAG) Solyc06g082940.2.1 (e_value=4e-99) genomic_reference:SL2.40ch06 gene_region:44850630-44851884 transcript_region:SL2.40ch06:44850630..44851884+ go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit XI (AHRD V1 ***- B6SHL1_MAIZE); contains Interpro domain(s) IPR003757 Photosystem I reaction centre, subunit XI PsaL "; GO:0009538 NbS00028915g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|1|0.5|0.6|5|0|553; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=1e-94) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G25440.1 (e_value=9e-96) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9223998-9225505 FORWARD LENGTH=444;; (*ITAG) Solyc06g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44864363-44871826 transcript_region:SL2.40ch06:44864363..44871826- go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00028915g0015.1 protein AED:0.16 eAED:0.16 QI:191|1|1|1|0.75|0.6|5|301|221; (*SWP) sp|Q9FTZ2|EBP_ORYSJ (e_value=1e-79) Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1;; (*TAIR) AT1G20050.1 (e_value=1e-75) | Symbols: HYD1 | C-8,7 sterol isomerase | chr1:6949160-6950135 FORWARD LENGTH=223;; (*ITAG) Solyc06g082980.2.1 (e_value=7e-135) genomic_reference:SL2.40ch06 gene_region:44859070-44863088 transcript_region:SL2.40ch06:44859070..44863088- go_terms:GO:0000247 functional_description:"3-beta-hydroxysteroid-Delta8 Delta7-isomerase (AHRD V1 **-* C3KH60_ANOFI); contains Interpro domain(s) IPR007905 Emopamil-binding "; GO:0000247 NbS00028915g0023.1 protein AED:0.26 eAED:0.27 QI:377|0.72|0.75|1|0.63|0.75|12|0|465; (*SWP) sp|Q8L7B2|SCP20_ARATH (e_value=0.0) Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2;; (*TAIR) AT4G12910.1 (e_value=0.0) | Symbols: scpl20 | serine carboxypeptidase-like 20 | chr4:7550576-7553051 REVERSE LENGTH=497;; (*ITAG) Solyc06g083030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44876797-44881413 transcript_region:SL2.40ch06:44876797..44881413- go_terms:GO:0042802 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TDA5_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802 NbS00028915g0022.1 protein AED:0.39 eAED:0.40 QI:0|0|0.33|0.66|0.5|0.66|3|0|155; (*TAIR) AT3G07480.1 (e_value=7e-59) | Symbols: | 2Fe-2S ferredoxin-like superfamily protein | chr3:2389026-2389505 FORWARD LENGTH=159;; (*ITAG) Solyc06g007630.1.1 (e_value=5e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1644026-1644511 transcript_region:SL2.40ch06:1644026..1644511+ go_terms:GO:0009055 functional_description:"Ferredoxin (AHRD V1 ***- B6TR21_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00055262g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|77; (*SWP) sp|O49884|RL30_LUPLU (e_value=4e-44) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G77940.1 (e_value=6e-42) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:29304116-29305288 REVERSE LENGTH=112;; (*ITAG) Solyc04g072660.2.1 (e_value=4e-49) genomic_reference:SL2.40ch04 gene_region:57219626-57221412 transcript_region:SL2.40ch04:57219626..57221412- go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00003691g0101.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|158 NbS00044911g0010.1 protein AED:0.01 eAED:0.10 QI:0|1|0|1|0|1|2|0|169; (*SWP) sp|P56331|IF1A_ONOVI (e_value=3e-61) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=5e-63) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc01g095410.2.1 (e_value=7e-65) genomic_reference:SL2.40ch01 gene_region:78435197-78437089 transcript_region:SL2.40ch01:78435197..78437089+ go_terms:GO:0003743,GO:0033592 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743,GO:0033592 NbS00044911g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.8|1|1|1|5|54|409; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=1e-177) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=1e-178) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc05g050210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59397892-59402194 transcript_region:SL2.40ch05:59397892..59402194- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00026289g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|0|0|2|522|135; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=5e-85) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=4e-86) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc03g083520.2.1 (e_value=2e-92) genomic_reference:SL2.40ch03 gene_region:47010674-47015134 transcript_region:SL2.40ch03:47010674..47015134+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00026289g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|194; (*SWP) sp|P17407|21KD_DAUCA (e_value=5e-73) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62350.1 (e_value=1e-71) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25037504-25038112 FORWARD LENGTH=202;; (*ITAG) Solyc06g034370.1.1 (e_value=6e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:20869116-20869694 transcript_region:SL2.40ch06:20869116..20869694- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9T3X5_RICCO); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00003790g0008.1 protein AED:0.19 eAED:0.21 QI:146|0.55|0.5|1|0.77|0.6|10|0|649; (*SWP) sp|Q94II3|PMTL_ARATH (e_value=0.0) Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1;; (*TAIR) AT4G19120.2 (e_value=0.0) | Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600;; (*ITAG) Solyc08g075870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57127248-57130726 transcript_region:SL2.40ch08:57127248..57130726+ functional_description:"Dehydration-responsive family protein-like (AHRD V1 **-- Q6EP94_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00009760g0003.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|0.5|0.33|3|71|107 NbS00027929g0006.1 protein AED:0.00 eAED:0.00 QI:250|1|1|1|1|1|2|91|138; (*SWP) sp|Q6NMR9|GDL84_ARATH (e_value=1e-51) GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1;; (*TAIR) AT5G45920.1 (e_value=9e-53) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:18622822-18624677 FORWARD LENGTH=241;; (*ITAG) Solyc02g077220.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:36794632-36799697 transcript_region:SL2.40ch02:36794632..36799697- go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6THH7_MAIZE); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00027929g0007.1 protein AED:0.27 eAED:0.30 QI:9|1|0|1|1|0.5|2|0|105; (*SWP) sp|Q6NMR9|GDL84_ARATH (e_value=4e-42) GDSL esterase/lipase At5g45920 OS=Arabidopsis thaliana GN=At5g45920 PE=2 SV=1;; (*TAIR) AT5G45920.1 (e_value=3e-43) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:18622822-18624677 FORWARD LENGTH=241;; (*ITAG) Solyc02g077220.2.1 (e_value=6e-61) genomic_reference:SL2.40ch02 gene_region:36794632-36799697 transcript_region:SL2.40ch02:36794632..36799697- go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6THH7_MAIZE); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00027929g0012.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.33|0|0.33|3|0|169; (*ITAG) Solyc11g018640.1.1 (e_value=9e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8852757-8853035 transcript_region:SL2.40ch11:8852757..8853035- functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH)"; NbS00027929g0011.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|0.5|0.66|3|0|326; (*ITAG) Solyc11g018650.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8853241-8853468 transcript_region:SL2.40ch11:8853241..8853468- functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 **-- FRS8_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00060779g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|83 NbC25335888g0003.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|303|77 NbS00023980g0005.1 protein AED:0.12 eAED:0.12 QI:177|0.5|0.4|1|1|0.8|5|17|533; (*SWP) sp|Q9STS3|CDC23_ARATH (e_value=0.0) Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1;; (*TAIR) AT3G48150.1 (e_value=0.0) | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579;; (*ITAG) Solyc03g113740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00031891g0005.1 protein AED:0.70 eAED:0.76 QI:19|0.25|0.2|0.6|1|0.8|5|0|275; (*SWP) sp|Q8RVB2|SPY_SOLLC (e_value=1e-177) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1;; (*TAIR) AT3G11540.2 (e_value=2e-165) | Symbols: SPY | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:3632842-3637547 FORWARD LENGTH=732;; (*ITAG) Solyc09g010180.2.1 (e_value=8e-179) genomic_reference:SL2.40ch09 gene_region:3556738-3572844 transcript_region:SL2.40ch09:3556738..3572844+ go_terms:GO:0016262 functional_description:"TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; GO:0016262 NbS00045490g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0|0.66|1|1|3|0|76; (*SWP) sp|Q9VW56|PFD6_DROME (e_value=8e-15) Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=2 SV=1;; (*TAIR) AT1G29990.1 (e_value=4e-36) | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821 FORWARD LENGTH=129;; (*ITAG) Solyc08g016420.2.1 (e_value=1e-38) genomic_reference:SL2.40ch08 gene_region:7447438-7455889 transcript_region:SL2.40ch08:7447438..7455889- go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 6 (AHRD V1 ***- B6T5S0_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631,GO:0051087 NbS00000619g0004.1 protein AED:0.42 eAED:0.47 QI:0|0|0|0.5|0|0.5|2|0|127; (*ITAG) Solyc04g071380.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55957071-55960926 transcript_region:SL2.40ch04:55957071..55960926+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00017674g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|326; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=7e-83) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT5G38280.1 (e_value=1e-91) | Symbols: PR5K | PR5-like receptor kinase | chr5:15293325-15295838 REVERSE LENGTH=665;; (*ITAG) Solyc05g009090.1.1 (e_value=1e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3230564-3232618 transcript_region:SL2.40ch05:3230564..3232618+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017674g0007.1 protein AED:0.31 eAED:0.54 QI:0|0.12|0|1|0|0|9|0|510; (*SWP) sp|P51409|RM05_SOLTU (e_value=6e-65) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=1e-59) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050020.1.1 (e_value=5e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00017674g0006.1 protein AED:0.44 eAED:0.51 QI:0|0|0|1|0|0|3|0|162; (*SWP) sp|P05718|CYB_VICFA (e_value=9e-17) Cytochrome b OS=Vicia faba GN=MT-CYB PE=3 SV=2;; (*ITAG) ATMG00220.1 (e_value=7e-18) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00017674g0005.1 protein AED:0.06 eAED:0.37 QI:0|0|0|1|0|0|2|0|155; (*ITAG) Solyc12g036320.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:30752072-30754246 transcript_region:SL2.40ch12:30752072..30754246+ functional_description:"Serine/threonine protein kinase B (Fragment) (AHRD V1 *-*- B1AEX8_POPTN)"; NbS00012248g0009.1 protein AED:0.36 eAED:0.57 QI:0|0|0|1|0|0.2|5|0|430; (*ITAG) Solyc01g065790.1.1 (e_value=6e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012248g0011.1 protein AED:0.61 eAED:0.66 QI:0|0|0|1|0|0.33|3|0|104; (*SWP) sp|Q07060|ATP9_PETSP (e_value=1e-28) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=1e-23) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00012248g0008.1 protein AED:0.51 eAED:0.78 QI:0|0|0|1|0|0|5|0|227; (*ITAG) Solyc05g023930.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:30119547-30119861 transcript_region:SL2.40ch05:30119547..30119861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012248g0010.1 protein AED:0.46 eAED:0.47 QI:0|0|0|1|0|0|2|0|128; (*ITAG) Solyc08g036520.2.1 (e_value=6e-14) genomic_reference:SL2.40ch08 gene_region:25578974-25579528 transcript_region:SL2.40ch08:25578974..25579528- functional_description:"Unknown Protein (AHRD V1)"; NbS00004369g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|831; (*SWP) sp|Q6DN14|MCTP1_HUMAN (e_value=3e-11) Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2;; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc01g086700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73416118-73418591 transcript_region:SL2.40ch01:73416118..73418591+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00004369g0012.1 protein AED:0.18 eAED:0.22 QI:0|0.87|0.84|1|0.62|0.6|25|0|1103; (*SWP) sp|Q9H9Y6|RPA2_HUMAN (e_value=0.0) DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2;; (*TAIR) AT1G29940.1 (e_value=0.0) | Symbols: NRPA2 | nuclear RNA polymerase A2 | chr1:10479322-10486670 REVERSE LENGTH=1178;; (*ITAG) Solyc01g086710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73420388-73436710 transcript_region:SL2.40ch01:73420388..73436710+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SVH7_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00004369g0011.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.8|1|1|5|0|657; (*TAIR) AT5G06850.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:2127200-2129584 REVERSE LENGTH=794;; (*ITAG) Solyc03g077920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:42082307-42084676 transcript_region:SL2.40ch03:42082307..42084676- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00004369g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|209; (*TAIR) AT5G06850.1 (e_value=2e-108) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:2127200-2129584 REVERSE LENGTH=794;; (*ITAG) Solyc01g086720.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:73436921-73440410 transcript_region:SL2.40ch01:73436921..73440410- go_terms:GO:0005509 functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; GO:0005509 NbS00031127g0004.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|6|0|517; (*SWP) sp|Q5XF57|Y5576_ARATH (e_value=2e-60) Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1;; (*TAIR) AT5G37790.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:15008433-15011025 REVERSE LENGTH=552;; (*ITAG) Solyc02g091470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47339482-47342638 transcript_region:SL2.40ch02:47339482..47342638+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 *-** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00045798g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|368; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=6e-82) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=7e-82) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc04g080120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61972908-61974746 transcript_region:SL2.40ch04:61972908..61974746- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00045798g0002.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|264; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-66) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-66) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc04g080120.1.1 (e_value=9e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61972908-61974746 transcript_region:SL2.40ch04:61972908..61974746- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00045798g0008.1 protein AED:0.09 eAED:0.09 QI:180|0.87|0.88|1|0.75|0.77|9|96|410; (*TAIR) AT5G14020.1 (e_value=8e-123) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr5:4523730-4525819 REVERSE LENGTH=401;; (*ITAG) Solyc02g093960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49218739-49221091 transcript_region:SL2.40ch02:49218739..49221091- functional_description:"Genomic DNA chromosome 5 P1 clone MAC12 (AHRD V1 **-- Q9FFX3_ARATH)"; NbS00001514g0004.1 protein AED:0.39 eAED:0.61 QI:0|0|0|1|0|0|2|0|88; (*SWP) sp|Q06RC6|NDHJ_JASNU (e_value=1e-23) NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Jasminum nudiflorum GN=ndhJ PE=3 SV=1;; (*ITAG) ATCG00420.1 (e_value=3e-23) | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=158;; (*ITAG) Solyc01g007290.1.1 (e_value=8e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1845511-1845987 transcript_region:SL2.40ch01:1845511..1845987- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit J (AHRD V1 ***- NDHJ_TRIEI); contains Interpro domain(s) IPR020396 NADH:ubiquinone oxidoreductase, 30 kDa subunit, conserved site IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit "; GO:0055114 NbS00016020g0006.1 protein AED:0.04 eAED:0.04 QI:156|1|1|1|1|1|5|441|168; (*SWP) sp|Q9FT52|ATP5H_ARATH (e_value=1e-93) ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3;; (*TAIR) AT3G52300.1 (e_value=8e-95) | Symbols: ATPQ | ATP synthase D chain, mitochondrial | chr3:19396689-19398119 FORWARD LENGTH=168;; (*ITAG) Solyc11g072450.1.1 (e_value=2e-107) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52705683-52710449 transcript_region:SL2.40ch11:52705683..52710449- go_terms:GO:0000276 functional_description:"Mitochondrial F0 ATP synthase D chain (AHRD V1 ***- B3TLP5_ELAGV); contains Interpro domain(s) IPR008689 ATPase, F0 complex, subunit D, mitochondrial "; GO:0000276 NbS00037829g0005.1 protein AED:0.05 eAED:0.05 QI:170|1|0.33|1|1|1|3|0|350; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=9e-152) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT1G06620.1 (e_value=7e-153) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g010020.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3447416-3449839 transcript_region:SL2.40ch09:3447416..3449839- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00029173g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.61|0.5|0.92|0.53|0.71|14|0|867; (*SWP) sp|Q67JH0|FTSH3_SYMTH (e_value=2e-97) ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium thermophilum GN=ftsH3 PE=3 SV=1;; (*TAIR) AT3G16290.1 (e_value=0.0) | Symbols: EMB2083 | AAA-type ATPase family protein | chr3:5521187-5524995 REVERSE LENGTH=876;; (*ITAG) Solyc12g044400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44759933-44772028 transcript_region:SL2.40ch12:44759933..44772028- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00015892g0011.1 protein AED:0.12 eAED:0.17 QI:0|0.61|0.28|1|0.76|0.64|14|0|1481; (*TAIR) AT5G23150.1 (e_value=7e-113) | Symbols: HUA2 | Tudor/PWWP/MBT domain-containing protein | chr5:7786173-7792080 FORWARD LENGTH=1392;; (*ITAG) Solyc02g014130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:6347144-6359434 transcript_region:SL2.40ch02:6347144..6359434- go_terms:GO:0003700 functional_description:"Hepatoma-derived growth factor-related protein 3 (AHRD V1 *--* C1BWG5_ESOLU); contains Interpro domain(s) IPR006569 Regulation of nuclear pre-mRNA protein "; GO:0003700 NbS00015892g0014.1 protein AED:0.28 eAED:0.31 QI:241|0.33|0.5|1|0|0.25|4|0|153; (*TAIR) AT5G23130.1 (e_value=2e-30) | Symbols: | Peptidoglycan-binding LysM domain-containing protein | chr5:7781475-7783333 FORWARD LENGTH=397;; (*ITAG) Solyc02g014090.2.1 (e_value=8e-36) genomic_reference:SL2.40ch02 gene_region:6283148-6286134 transcript_region:SL2.40ch02:6283148..6286134+ go_terms:GO:0016998 functional_description:"LysM domain containing protein expressed (AHRD V1 ***- Q7XD97_ORYSJ); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0016998 NbS00018934g0012.1 protein AED:0.05 eAED:0.06 QI:0|1|0|1|1|0.5|2|0|207; (*TAIR) AT4G33985.1 (e_value=4e-37) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc01g108090.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87211079-87212211 transcript_region:SL2.40ch01:87211079..87212211+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00018934g0010.1 protein AED:0.13 eAED:0.13 QI:19|1|1|1|1|1|7|61|508; (*SWP) sp|Q9FX97|FUT12_ARATH (e_value=0.0) Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1;; (*TAIR) AT1G49710.1 (e_value=0.0) | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase 12 | chr1:18391622-18393769 REVERSE LENGTH=513;; (*ITAG) Solyc01g108110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00018934g0011.1 protein AED:0.26 eAED:0.26 QI:117|1|1|1|0.75|0.8|5|319|241; (*ITAG) Solyc01g108100.2.1 (e_value=8e-101) genomic_reference:SL2.40ch01 gene_region:87218577-87223859 transcript_region:SL2.40ch01:87218577..87223859+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018934g0115.1 protein AED:0.16 eAED:0.16 QI:206|1|1|1|1|1|10|411|569 NbS00018934g0116.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|179 NbS00018934g0103.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|1|1|2|0|503 NbS00018934g0117.1 protein AED:0.10 eAED:0.10 QI:309|0.66|0.8|0.9|0.44|0.4|10|475|698 NbS00030847g0007.1 protein AED:0.14 eAED:0.23 QI:23|0.5|0|1|0.5|0.66|3|0|125; (*ITAG) Solyc03g112330.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:56815336-56817659 transcript_region:SL2.40ch03:56815336..56817659+ go_terms:GO:0006950 functional_description:"U-box domain-containing protein 33 (AHRD V1 ***- PUB33_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00030847g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|87 NbS00023220g0005.1 protein AED:0.34 eAED:0.34 QI:123|0.95|0.90|1|0.85|0.90|21|345|971; (*SWP) sp|Q9LKW9|NHX7_ARATH (e_value=0.0) Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1;; (*TAIR) AT2G01980.1 (e_value=0.0) | Symbols: SOS1, ATSOS1, ATNHX7 | sodium proton exchanger, putative (NHX7) (SOS1) | chr2:457070-463145 FORWARD LENGTH=1146;; (*ITAG) Solyc04g018100.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:9576648-9585923 transcript_region:SL2.40ch04:9576648..9585923+ go_terms:GO:0015385 functional_description:"Sodium/hydrogen exchanger Na+ H+ antiporter (AHRD V1 *--* Q8IET0_PLAF7); contains Interpro domain(s) IPR018418 Na+/H+ exchanger, isoforms 7/8, conserved region "; GO:0015385 NbS00016609g0001.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|738; (*SWP) sp|Q9JK91|MLH1_MOUSE (e_value=4e-176) DNA mismatch repair protein Mlh1 OS=Mus musculus GN=Mlh1 PE=2 SV=2;; (*TAIR) AT4G09140.1 (e_value=0.0) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737;; (*ITAG) Solyc04g045660.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:34457125-34496027 transcript_region:SL2.40ch04:34457125..34496027- go_terms:GO:0032137 functional_description:"DNA mismatch repair protein MutL family protein (AHRD V1 ***- C5PD31_COCP7); contains Interpro domain(s) IPR011186 DNA mismatch repair protein Mlh1 "; GO:0032137 NbS00028746g0007.1 protein AED:0.10 eAED:0.10 QI:187|1|0.57|1|0.33|0.57|7|310|487; (*TAIR) AT3G56720.2 (e_value=8e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. | chr3:21011354-21013264 FORWARD LENGTH=387;; (*ITAG) Solyc12g020000.1.1 (e_value=2e-152) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:12863185-12872133 transcript_region:SL2.40ch12:12863185..12872133- functional_description:"Arginine/serine-rich coiled-coil protein 2 (AHRD V1 *-*- RSRC2_DANRE)"; NbS00028746g0009.1 protein AED:0.05 eAED:0.10 QI:0|0|0|1|0.33|0|4|0|417; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=8e-43) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT1G03390.1 (e_value=4e-159) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:841033-842418 REVERSE LENGTH=461;; (*ITAG) Solyc08g013830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3177094-3178440 transcript_region:SL2.40ch08:3177094..3178440+ go_terms:GO:0050734,GO:0010327 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0050734,GO:0010327 NbS00008400g0009.1 protein AED:0.26 eAED:0.26 QI:396|0.87|0.77|1|0.62|0.77|9|633|528; (*SWP) sp|Q94F30|ESD4_ARATH (e_value=5e-127) Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1;; (*TAIR) AT4G15880.1 (e_value=4e-128) | Symbols: ESD4, ATESD4 | Cysteine proteinases superfamily protein | chr4:9012769-9015797 FORWARD LENGTH=489;; (*ITAG) Solyc01g066830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67397359-67410992 transcript_region:SL2.40ch01:67397359..67410992- go_terms:GO:0016929 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-** B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbS00058083g0003.1 protein AED:0.26 eAED:0.26 QI:71|0.6|0.66|0.83|0.6|0.83|6|381|151; (*SWP) sp|Q8L8B8|LOG3_ARATH (e_value=3e-68) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1;; (*TAIR) AT2G37210.1 (e_value=2e-69) | Symbols: | lysine decarboxylase family protein | chr2:15624253-15626834 REVERSE LENGTH=215;; (*ITAG) Solyc11g069570.1.1 (e_value=7e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51273029-51276687 transcript_region:SL2.40ch11:51273029..51276687- functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; NbS00017573g0006.1 protein AED:0.23 eAED:0.23 QI:264|1|1|1|1|1|4|142|350; (*TAIR) AT3G26580.1 (e_value=2e-113) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9758933-9760349 FORWARD LENGTH=350;; (*ITAG) Solyc05g013480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6685702-6691461 transcript_region:SL2.40ch05:6685702..6691461- functional_description:"ATP-dependent protease Clp ATPase subunit (AHRD V1 *--- B6STX8_MAIZE); contains Interpro domain(s) IPR019734 Tetratricopeptide repeat "; NbS00027310g0019.1 protein AED:0.11 eAED:0.11 QI:68|0.66|0.75|1|1|1|4|208|337; (*TAIR) AT4G15450.1 (e_value=5e-121) | Symbols: | Senescence/dehydration-associated protein-related | chr4:8839437-8841162 FORWARD LENGTH=381;; (*ITAG) Solyc12g008460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1876263-1882122 transcript_region:SL2.40ch12:1876263..1882122- functional_description:"Senescence-associated protein 12 (AHRD V1 ***- B6U1F2_MAIZE); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00027310g0025.1 protein AED:0.15 eAED:0.15 QI:67|1|1|1|0.57|0.37|8|171|523; (*SWP) sp|Q10181|YAW6_SCHPO (e_value=4e-47) Uncharacterized protein C3F10.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10.06c PE=2 SV=1;; (*TAIR) AT2G40570.1 (e_value=0.0) | Symbols: | initiator tRNA phosphoribosyl transferase family protein | chr2:16941066-16943288 FORWARD LENGTH=521;; (*ITAG) Solyc12g008450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1870999-1874812 transcript_region:SL2.40ch12:1870999..1874812- go_terms:GO:0016763 functional_description:"tRNA A64-2&apos-O-ribosylphosphate transferase (AHRD V1 ***- B2VVT1_PYRTR); contains Interpro domain(s) IPR007306 Initiator tRNA phosphoribosyl transferase "; GO:0016763 NbS00027310g0018.1 protein AED:0.17 eAED:0.17 QI:312|0.92|0.92|1|1|1|14|456|516; (*TAIR) AT2G19880.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:8581578-8585118 FORWARD LENGTH=519;; (*ITAG) Solyc12g008490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1892113-1901586 transcript_region:SL2.40ch12:1892113..1901586- functional_description:"Ceramide glucosyltransferase (AHRD V1 ***- Q946Y1_GOSAR)"; NbS00027310g0027.1 protein AED:0.04 eAED:0.04 QI:152|0.75|1|1|0.75|0.8|5|173|134; (*TAIR) AT3G16360.2 (e_value=5e-20) | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145; NbS00027310g0026.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0|0.5|1|0.75|4|0|111; (*SWP) sp|Q9V4N3|CYB5_DROME (e_value=2e-14) Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1;; (*TAIR) AT1G60660.1 (e_value=2e-31) | Symbols: B5 #5, ATCB5LP, CB5LP | cytochrome B5-like protein | chr1:22342589-22342954 REVERSE LENGTH=121;; (*ITAG) Solyc12g008470.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1884634-1886386 transcript_region:SL2.40ch12:1884634..1886386+ go_terms:GO:0020037 functional_description:"Cytochrome b5 reductase (AHRD V1 **-- Q54XV1_DICDI); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0020037 NbS00025723g0005.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|0|0.33|3|0|226; (*ITAG) Solyc01g066930.1.1 (e_value=4e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00035566g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0.5|1|0.33|0.5|4|0|297; (*SWP) sp|Q9LSP9|CTL2_ARATH (e_value=8e-137) Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1;; (*TAIR) AT3G16920.1 (e_value=4e-138) | Symbols: CTL2, ATCTL2 | chitinase-like protein 2 | chr3:5776663-5777886 REVERSE LENGTH=348;; (*ITAG) Solyc12g098810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64528209-64531001 transcript_region:SL2.40ch12:64528209..64531001+ go_terms:GO:0005975,GO:0016998 functional_description:"Chitinase-like protein (AHRD V1 ***- Q6JX04_GOSHI); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0005975,GO:0016998 NbS00026452g0005.1 protein AED:0.10 eAED:0.14 QI:0|0.6|0.16|1|1|1|6|0|498; (*SWP) sp|Q50EK3|C04C1_PINTA (e_value=1e-117) Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1;; (*TAIR) AT1G69500.1 (e_value=0.0) | Symbols: CYP704B1 | cytochrome P450, family 704, subfamily B, polypeptide 1 | chr1:26123960-26125909 FORWARD LENGTH=524;; (*ITAG) Solyc01g010900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6355196-6360236 transcript_region:SL2.40ch01:6355196..6360236- go_terms:GO:0019825,GO:0018685 functional_description:"Cytochrome P450"; GO:0019825,GO:0018685 NbS00022673g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|72; (*SWP) sp|P62981|RS27A_SOLTU (e_value=8e-23) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=2e-21) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc12g098940.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64627947-64628417 transcript_region:SL2.40ch12:64627947..64628417- go_terms:GO:0005840 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005840 NbS00046221g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|220; (*ITAG) Solyc09g010600.1.1 (e_value=6e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3947451-3948434 transcript_region:SL2.40ch09:3947451..3948434- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013240g0014.1 protein AED:0.04 eAED:0.04 QI:156|1|1|1|1|1|5|368|112; (*SWP) sp|O49884|RL30_LUPLU (e_value=8e-76) 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1;; (*TAIR) AT1G36240.1 (e_value=2e-71) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr1:13614890-13616233 FORWARD LENGTH=112;; (*ITAG) Solyc11g071490.1.1 (e_value=4e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52029448-52031919 transcript_region:SL2.40ch11:52029448..52031919+ go_terms:GO:0005840 functional_description:"Ribosomal protein L30 (AHRD V1 ***- B3TLP4_ELAGV); contains Interpro domain(s) IPR000231 Ribosomal protein L30e "; GO:0005840 NbS00013240g0015.1 protein AED:0.21 eAED:0.22 QI:578|0.28|0.25|0.62|0.57|0.62|8|0|549; (*SWP) sp|A2WW87|GAM1_ORYSI (e_value=2e-82) Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G11440.1 (e_value=1e-68) | Symbols: ATMYB65, MYB65 | myb domain protein 65 | chr3:3603056-3604929 FORWARD LENGTH=553;; (*ITAG) Solyc06g073640.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41820787-41825280 transcript_region:SL2.40ch06:41820787..41825280- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00048068g0001.1 protein AED:0.30 eAED:0.35 QI:0|0|0|1|1|1|2|0|261; (*SWP) sp|Q39202|RLK1_ARATH (e_value=4e-26) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=2e-26) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g014560.2.1 (e_value=4e-110) genomic_reference:SL2.40ch01 gene_region:14336604-14337940 transcript_region:SL2.40ch01:14336604..14337940- go_terms:GO:0005529 functional_description:"D-mannose binding lectin family protein expressed (AHRD V1 **-- Q2RAY8_ORYSJ); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0005529 NbS00053364g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|653; (*SWP) sp|Q9FND8|PP409_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1;; (*TAIR) AT5G40400.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:16166444-16168276 FORWARD LENGTH=610;; (*ITAG) Solyc03g007390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1934183-1937655 transcript_region:SL2.40ch03:1934183..1937655+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021740g0002.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|101 NbS00026507g0007.1 protein AED:0.04 eAED:0.04 QI:14|1|0.5|1|1|1|4|0|148; (*SWP) sp|P92979|APR1_ARATH (e_value=4e-40) 5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2;; (*TAIR) AT4G04610.1 (e_value=3e-41) | Symbols: APR1, APR, PRH19, ATAPR1 | APS reductase 1 | chr4:2325069-2326718 FORWARD LENGTH=465;; (*ITAG) Solyc02g080640.2.1 (e_value=2e-51) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00026507g0004.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|114 NbS00026507g0011.1 protein AED:0.43 eAED:0.80 QI:0|0|0|1|1|0.66|3|0|74 NbS00015098g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.66|1|1|1|3|115|192; (*SWP) sp|B9M4V3|WRBA_GEOSF (e_value=1e-51) Flavoprotein WrbA OS=Geobacter sp. (strain FRC-32) GN=wrbA PE=3 SV=1;; (*TAIR) AT4G27270.1 (e_value=4e-114) | Symbols: | Quinone reductase family protein | chr4:13661458-13663243 REVERSE LENGTH=205;; (*ITAG) Solyc10g006650.2.1 (e_value=1e-111) genomic_reference:SL2.40ch10 gene_region:1157432-1161954 transcript_region:SL2.40ch10:1157432..1161954- go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6U724_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00013654g0003.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|0.75|1|1|4|0|327; (*SWP) sp|Q9FE01|APX2_ORYSJ (e_value=9e-139) L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1;; (*TAIR) AT1G07890.8 (e_value=4e-139) | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate peroxidase 1 | chr1:2438005-2439435 FORWARD LENGTH=250;; (*ITAG) Solyc06g005150.2.1 (e_value=4e-154) genomic_reference:SL2.40ch06 gene_region:170218-173338 transcript_region:SL2.40ch06:170218..173338- go_terms:GO:0055114 functional_description:"Ascorbate peroxidase (AHRD V1 ***- Q52QQ4_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00013654g0011.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.57|1|0.66|0.85|7|0|580; (*SWP) sp|Q9STW5|MACP2_ARATH (e_value=0.0) MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1;; (*TAIR) AT4G24290.2 (e_value=0.0) | Symbols: | MAC/Perforin domain-containing protein | chr4:12594856-12597815 FORWARD LENGTH=606;; (*ITAG) Solyc04g048950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:37836463-37848150 transcript_region:SL2.40ch04:37836463..37848150+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00013654g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc03g116510.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59960022-59960303 transcript_region:SL2.40ch03:59960022..59960303+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008263g0009.1 protein AED:0.07 eAED:0.09 QI:0|0.16|0|1|0.16|0.14|7|0|501; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=0.0) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=0.0) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g010250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:5518796-5521038 transcript_region:SL2.40ch06:5518796..5521038- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00017664g0005.1 protein AED:0.18 eAED:0.22 QI:0|0.33|0.14|1|0.33|0.28|7|0|448; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-80) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G32790.1 (e_value=4e-135) | Symbols: | Exostosin family protein | chr4:15812566-15814908 FORWARD LENGTH=593;; (*ITAG) Solyc08g066690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52723167-52726109 transcript_region:SL2.40ch08:52723167..52726109- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00017664g0006.1 protein AED:0.45 eAED:0.93 QI:0|0|0|1|1|1|2|0|119 NbS00038302g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|13|215|579; (*SWP) sp|Q8VYN6|K6PF5_ARATH (e_value=0.0) 6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1;; (*TAIR) AT2G22480.1 (e_value=0.0) | Symbols: PFK5 | phosphofructokinase 5 | chr2:9545670-9548414 FORWARD LENGTH=537;; (*ITAG) Solyc04g014270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4578308-4586276 transcript_region:SL2.40ch04:4578308..4586276+ go_terms:GO:0003872 functional_description:"Phosphofructokinase family protein (AHRD V1 **** D7LE10_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0003872 NbS00021249g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|125; (*SWP) sp|Q6NLS8|PTHM_ARATH (e_value=2e-50) Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1;; (*TAIR) AT5G19830.1 (e_value=1e-51) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:6703383-6705125 FORWARD LENGTH=219;; (*ITAG) Solyc02g093030.2.1 (e_value=1e-63) genomic_reference:SL2.40ch02 gene_region:48551254-48557510 transcript_region:SL2.40ch02:48551254..48557510- go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00021249g0001.1 protein AED:0.31 eAED:0.32 QI:77|1|0.5|1|0|0|2|0|248; (*TAIR) AT3G11890.1 (e_value=2e-23) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:3756026-3757609 FORWARD LENGTH=500;; (*ITAG) Solyc11g045270.1.1 (e_value=4e-132) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37120107-37121559 transcript_region:SL2.40ch11:37120107..37121559- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011510 Sterile alpha motif homology 2 "; NbS00058785g0006.1 protein AED:0.49 eAED:0.49 QI:0|0.55|0.4|0.6|0.77|0.8|10|0|289; (*SWP) sp|Q6DRB1|GLE1_DANRE (e_value=5e-24) Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2;; (*TAIR) AT1G13120.1 (e_value=7e-54) | Symbols: | | chr1:4469334-4472775 REVERSE LENGTH=611;; (*ITAG) Solyc05g013790.2.1 (e_value=4e-151) genomic_reference:SL2.40ch05 gene_region:7100783-7110858 transcript_region:SL2.40ch05:7100783..7110858- go_terms:GO:0005643 functional_description:"Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like "; GO:0005643 NbS00014109g0006.1 protein AED:0.07 eAED:0.07 QI:37|0.87|0.88|1|0.75|0.66|9|201|286; (*SWP) sp|Q7L2J0|MEPCE_HUMAN (e_value=3e-43) 7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1;; (*TAIR) AT5G51130.1 (e_value=9e-98) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:20781896-20783901 FORWARD LENGTH=318;; (*ITAG) Solyc05g050000.2.1 (e_value=2e-149) genomic_reference:SL2.40ch05 gene_region:58997556-59001737 transcript_region:SL2.40ch05:58997556..59001737- go_terms:GO:0004652 functional_description:"Bicoid-interacting 3 domain-containing protein (Fragment) (AHRD V1 *-*- C6F7A2_PSEMZ); contains Interpro domain(s) IPR010675 Bicoid-interacting 3 "; GO:0004652 NbS00014109g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|110; (*TAIR) AT5G19570.1 (e_value=7e-18) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6606739-6607152 FORWARD LENGTH=137;; (*ITAG) Solyc11g006870.1.1 (e_value=6e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1414904-1415302 transcript_region:SL2.40ch11:1414904..1415302- functional_description:"Novel protein similar to H.sapiens C1orf91 chromosome 1 open reading frame 91 (C1orf91) (AHRD V1 **-- B8A4M3_DANRE); contains Interpro domain(s) IPR018908 Uncharacterised protein family UPF0546 "; NbS00002878g0008.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|727; (*SWP) sp|Q9LZW3|PUB16_ARATH (e_value=0.0) U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16 PE=2 SV=1;; (*TAIR) AT5G01830.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:320983-323007 FORWARD LENGTH=674;; (*ITAG) Solyc09g018230.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:13637609-13639675 transcript_region:SL2.40ch09:13637609..13639675- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00002878g0009.1 protein AED:0.21 eAED:0.37 QI:56|0|0|1|0|0|2|0|89; (*SWP) sp|Q2VEE9|PETD_SOLTU (e_value=1e-33) Cytochrome b6-f complex subunit 4 OS=Solanum tuberosum GN=petD PE=3 SV=1;; (*ITAG) ATCG00730.1 (e_value=3e-34) | Symbols: PETD | photosynthetic electron transfer D | chrC:76481-77672 FORWARD LENGTH=160;; (*ITAG) Solyc01g007540.2.1 (e_value=4e-35) genomic_reference:SL2.40ch01 gene_region:1874669-1875351 transcript_region:SL2.40ch01:1874669..1875351+ go_terms:GO:0016020,GO:0042651 functional_description:"Cytochrome b6-f complex subunit 4 (AHRD V1 ***- A1XFY6_NUPAD); contains Interpro domain(s) IPR005870 Cytochrome b6/f complex, subunit IV "; GO:0016020,GO:0042651 NbS00003404g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|212; (*TAIR) AT3G44220.1 (e_value=2e-86) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:15928216-15929645 FORWARD LENGTH=206;; (*ITAG) Solyc06g074040.1.1 (e_value=3e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:42162942-42163568 transcript_region:SL2.40ch06:42162942..42163568- functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZH6_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00003404g0002.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0|2|494|255; (*TAIR) AT2G27260.1 (e_value=2e-33) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11669769-11670500 FORWARD LENGTH=243;; (*ITAG) Solyc11g068900.1.1 (e_value=3e-95) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50552542-50553312 transcript_region:SL2.40ch11:50552542..50553312- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 *-*- Q2RAC3_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00014860g0009.1 protein AED:0.09 eAED:0.09 QI:255|0.83|0.71|1|0.83|0.71|7|512|287; (*TAIR) AT4G30900.2 (e_value=3e-174) | Symbols: | DNAse I-like superfamily protein | chr4:15040021-15042203 FORWARD LENGTH=316;; (*ITAG) Solyc07g005610.2.1 (e_value=3e-116) genomic_reference:SL2.40ch07 gene_region:494019-496491 transcript_region:SL2.40ch07:494019..496491- functional_description:"Endonuclease/exonuclease/phosphatase family (AHRD V1 ***- B2SN06_XANOP)"; NbS00014860g0006.1 protein AED:0.20 eAED:0.20 QI:0|1|0.85|1|1|1|7|0|671; (*SWP) sp|Q4KLL4|TM9S4_RAT (e_value=0.0) Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1;; (*TAIR) AT5G10840.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr5:3424910-3427797 REVERSE LENGTH=648;; (*ITAG) Solyc07g005600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:487667-492520 transcript_region:SL2.40ch07:487667..492520- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00000044g0003.1 protein AED:0.02 eAED:0.02 QI:125|1|1|1|1|1|4|122|272; (*TAIR) AT1G72030.1 (e_value=1e-65) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:27110887-27111825 FORWARD LENGTH=256;; (*ITAG) Solyc03g025710.2.1 (e_value=2e-125) genomic_reference:SL2.40ch03 gene_region:7500031-7502230 transcript_region:SL2.40ch03:7500031..7502230- go_terms:GO:0008152 functional_description:"GCN5-related N-acetyltransferase (AHRD V1 ***- B2IU63_NOSP7); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00001199g0001.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.6|1|1|5|0|172; (*TAIR) AT5G15900.1 (e_value=1e-32) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g065600.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:31340580-31343502 transcript_region:SL2.40ch02:31340580..31343502- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00050444g0005.1 protein AED:0.13 eAED:0.13 QI:9|1|1|1|0.85|0.75|8|290|475; (*SWP) sp|Q9SXD5|GSXL3_ARATH (e_value=0.0) Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis thaliana GN=At1g62620 PE=2 SV=2;; (*TAIR) AT1G62620.1 (e_value=0.0) | Symbols: | Flavin-binding monooxygenase family protein | chr1:23182678-23184864 FORWARD LENGTH=450;; (*ITAG) Solyc06g060610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34997917-35003219 transcript_region:SL2.40ch06:34997917..35003219- go_terms:GO:0004499 functional_description:"Flavin-containing monooxygenase family protein (AHRD V1 **** D7KUN8_ARALY); contains Interpro domain(s) IPR000960 Flavin-containing monooxygenase FMO "; GO:0004499 NbS00014459g0004.1 protein AED:0.01 eAED:0.01 QI:308|1|1|1|1|1|4|244|187; (*SWP) sp|D7T737|MTND1_VITVI (e_value=8e-119) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Vitis vinifera GN=VIT_05s0020g04070 PE=3 SV=1;; (*TAIR) AT5G43850.1 (e_value=1e-108) | Symbols: ATARD4, ARD4 | RmlC-like cupins superfamily protein | chr5:17627364-17629122 REVERSE LENGTH=187;; (*ITAG) Solyc09g082630.2.1 (e_value=7e-127) genomic_reference:SL2.40ch09 gene_region:63746378-63748723 transcript_region:SL2.40ch09:63746378..63748723+ go_terms:GO:0010309 functional_description:"Acireductone dioxygenase (AHRD V1 **** Q08G57_PLAMJ); contains Interpro domain(s) IPR004313 Acireductone dioxygenase, ARD "; GO:0010309 NbS00025689g0008.1 protein AED:0.20 eAED:0.20 QI:412|1|1|1|1|1|2|120|480; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT2G19440.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:8418164-8419806 REVERSE LENGTH=478;; (*ITAG) Solyc10g078510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59632402-59635099 transcript_region:SL2.40ch10:59632402..59635099+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00020058g0011.1 protein AED:0.00 eAED:0.00 QI:49|1|1|1|0|0.66|3|277|196; (*TAIR) AT1G78995.1 (e_value=2e-43) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29715433-29716079 REVERSE LENGTH=159;; (*ITAG) Solyc10g086470.1.1 (e_value=8e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64600276-64604375 transcript_region:SL2.40ch10:64600276..64604375+ functional_description:"Chromosome 05 contig 1 DNA sequence (AHRD V1 *-*- Q018G6_OSTTA)"; NbS00020058g0010.1 protein AED:0.10 eAED:0.12 QI:0|0.5|0.2|1|1|1|5|0|400; (*SWP) sp|O81221|ACT_GOSHI (e_value=0.0) Actin OS=Gossypium hirsutum PE=3 SV=1;; (*TAIR) AT5G59370.2 (e_value=0.0) | Symbols: ACT4 | actin 4 | chr5:23950109-23951586 FORWARD LENGTH=377;; (*ITAG) Solyc10g086460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64597752-64599548 transcript_region:SL2.40ch10:64597752..64599548+ go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q9SAR7_STRAF); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00020058g0012.1 protein AED:0.27 eAED:0.28 QI:0|1|0.91|1|0.81|0.83|12|0|421; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=4e-23) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT3G09410.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr3:2898243-2900984 REVERSE LENGTH=427;; (*ITAG) Solyc10g086480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64607863-64614893 transcript_region:SL2.40ch10:64607863..64614893+ functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; NbS00020058g0003.1 protein AED:0.06 eAED:0.06 QI:358|0.75|0.8|1|0|0.2|5|1276|366; (*SWP) sp|Q9ZV25|P2C23_ARATH (e_value=1e-71) Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1;; (*TAIR) AT2G28890.1 (e_value=8e-73) | Symbols: PLL4 | poltergeist like 4 | chr2:12405799-12408062 REVERSE LENGTH=654;; (*ITAG) Solyc10g086490.1.1 (e_value=4e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64620504-64622612 transcript_region:SL2.40ch10:64620504..64622612- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00020119g0005.1 protein AED:0.09 eAED:0.14 QI:0|0.66|0.25|1|0.66|0.5|4|0|374; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=4e-143) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.2 (e_value=5e-144) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16059754-16063061 REVERSE LENGTH=626;; (*ITAG) Solyc04g078980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61195605-61198619 transcript_region:SL2.40ch04:61195605..61198619- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00020529g0007.1 protein AED:0.06 eAED:0.06 QI:46|1|1|1|1|1|3|89|188; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=1e-46) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT2G31180.1 (e_value=2e-48) | Symbols: ATMYB14, MYB14AT, MYB14 | myb domain protein 14 | chr2:13286806-13288175 REVERSE LENGTH=249;; (*ITAG) Solyc03g093890.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:48994736-48996204 transcript_region:SL2.40ch03:48994736..48996204- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00020529g0008.1 protein AED:0.04 eAED:0.04 QI:159|1|1|1|0.5|0.33|3|180|193; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=1e-32) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=3e-35) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc03g093890.2.1 (e_value=4e-65) genomic_reference:SL2.40ch03 gene_region:48994736-48996204 transcript_region:SL2.40ch03:48994736..48996204- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00046222g0001.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|1|1|2|0|66; (*TAIR) AT1G35190.2 (e_value=8e-31) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:12890544-12892632 FORWARD LENGTH=306;; (*ITAG) Solyc05g018130.2.1 (e_value=7e-36) genomic_reference:SL2.40ch05 gene_region:20050624-20056431 transcript_region:SL2.40ch05:20050624..20056431+ go_terms:GO:0045544 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family (AHRD V1 **-- Q4KIS1_PSEF5); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00003659g0001.1 protein AED:0.02 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|247; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=9e-20) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=4e-28) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=2e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00003659g0111.1 protein AED:0.39 eAED:0.39 QI:209|1|0.85|1|0.83|0.71|7|448|221 NbS00003659g0117.1 protein AED:0.21 eAED:0.21 QI:0|0.91|0.76|1|1|0.92|13|0|437 NbS00003659g0114.1 protein AED:0.25 eAED:0.25 QI:266|0.58|0.53|0.92|0.83|0.76|13|0|844 NbS00003659g0116.1 protein AED:0.58 eAED:0.73 QI:0|0.33|0|0.5|0.33|0.5|4|0|114 NbS00019727g0001.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|4|0|268; (*TAIR) AT3G01720.1 (e_value=1e-155) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr3:262412-265608 REVERSE LENGTH=802;; (*ITAG) Solyc05g008260.2.1 (e_value=4e-171) genomic_reference:SL2.40ch05 gene_region:2641082-2648464 transcript_region:SL2.40ch05:2641082..2648464- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q00Y41_OSTTA)"; NbS00019727g0009.1 protein AED:0.32 eAED:0.32 QI:77|0.77|0.7|0.9|0.88|0.8|10|0|390; (*SWP) sp|P08452|Y1174_SYNP6 (e_value=9e-107) Uncharacterized lipoprotein syc1174_c OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1174_c PE=4 SV=2;; (*ITAG) Solyc05g008270.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2650065-2656908 transcript_region:SL2.40ch05:2650065..2656908- functional_description:"Uncharacterized membrane protein (AHRD V1 ***- Q0I7R7_SYNS3)"; NbS00039779g0001.1 protein AED:0.02 eAED:0.04 QI:21|-1|0|1|-1|1|1|0|346; (*SWP) sp|Q9LZM4|WAKLQ_ARATH (e_value=3e-177) Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1;; (*TAIR) AT5G02070.1 (e_value=2e-178) | Symbols: | Protein kinase family protein | chr5:405895-408220 REVERSE LENGTH=657;; (*ITAG) Solyc09g011200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4547783-4552076 transcript_region:SL2.40ch09:4547783..4552076+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014055g0001.1 protein AED:0.19 eAED:0.29 QI:0|0|0|0.66|0|0|3|0|86; (*ITAG) Solyc11g065860.1.1 (e_value=7e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48521818-48522309 transcript_region:SL2.40ch11:48521818..48522309- go_terms:GO:0003677 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q2R194_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00028446g0005.1 protein AED:0.36 eAED:0.36 QI:197|0.2|0.33|0.83|0.4|0.5|6|0|162 NbS00031183g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.42|1|0.5|0.42|7|0|394; (*SWP) sp|B9TSP7|FACR6_ARATH (e_value=7e-59) Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1;; (*TAIR) AT3G11980.1 (e_value=2e-59) | Symbols: MS2, FAR2 | Jojoba acyl CoA reductase-related male sterility protein | chr3:3814484-3816927 FORWARD LENGTH=616;; (*ITAG) Solyc09g009580.2.1 (e_value=1e-119) genomic_reference:SL2.40ch09 gene_region:2998275-3003078 transcript_region:SL2.40ch09:2998275..3003078+ go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00058586g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|1|1|6|241|629; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=7e-49) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT3G49530.1 (e_value=3e-88) | Symbols: ANAC062, NTL6, NAC062 | NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469;; (*ITAG) Solyc03g080090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45541347-45546345 transcript_region:SL2.40ch03:45541347..45546345+ go_terms:GO:0003713,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003713,GO:0003700 NbS00010677g0007.1 protein AED:0.06 eAED:0.06 QI:18|0.77|0.8|1|0.55|0.7|10|173|784; (*SWP) sp|O22881|POT2_ARATH (e_value=0.0) Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2;; (*TAIR) AT2G40540.2 (e_value=0.0) | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | potassium transporter 2 | chr2:16931445-16934516 FORWARD LENGTH=794;; (*ITAG) Solyc03g097860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53629613-53633565 transcript_region:SL2.40ch03:53629613..53633565+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00010677g0005.1 protein AED:0.37 eAED:0.52 QI:0|0|0|1|0|0|2|0|72; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=7e-37) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=1e-34) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=7e-38) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00018061g0003.1 protein AED:0.23 eAED:0.28 QI:258|0.33|0.5|1|0|0|4|0|217; (*ITAG) Solyc08g044370.1.1 (e_value=1e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00018061g0002.1 protein AED:0.51 eAED:0.85 QI:0|0|0|1|0.5|0.33|3|0|151 NbS00000652g0010.1 protein AED:0.02 eAED:0.02 QI:0|0.71|0.75|0.87|0.71|0.75|8|246|1099; (*TAIR) AT3G19780.1 (e_value=5e-116) | Symbols: | LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:6870238-6874677 FORWARD LENGTH=1059;; (*ITAG) Solyc02g055460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:26963327-26982393 transcript_region:SL2.40ch02:26963327..26982393- functional_description:"Disulfide-isomerase A3 (AHRD V1 *-*- C1BNX3_9MAXI); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00000652g0003.1 protein AED:0.15 eAED:0.15 QI:0|1|0.83|1|0.8|0.66|6|683|142; (*TAIR) AT3G19800.2 (e_value=5e-45) | Symbols: | Protein of unknown function (DUF177) | chr3:6876153-6877471 FORWARD LENGTH=226;; (*ITAG) Solyc02g055440.2.1 (e_value=2e-61) genomic_reference:SL2.40ch02 gene_region:26960778-26961988 transcript_region:SL2.40ch02:26960778..26961988+ functional_description:"Genomic DNA chromosome 3 P1 clone MPN9 (AHRD V1 ***- Q9LT28_ARATH)"; NbS00000652g0108.1 protein AED:0.37 eAED:0.37 QI:61|1|1|1|1|1|5|332|401 NbS00000652g0109.1 protein AED:0.38 eAED:0.38 QI:0|0.75|0.66|0.77|0.87|0.77|9|197|252 NbS00000652g0207.1 protein AED:0.16 eAED:0.29 QI:7|0.33|0.2|1|0.33|0.4|10|0|284 NbS00030069g0007.1 protein AED:0.37 eAED:0.38 QI:0|0.33|0.5|1|1|0.75|4|0|114; (*SWP) sp|Q9C778|ELP4_ARATH (e_value=7e-29) Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1;; (*TAIR) AT3G11220.1 (e_value=5e-30) | Symbols: ELO1 | Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=355;; (*ITAG) Solyc11g010950.1.1 (e_value=1e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3999243-4002830 transcript_region:SL2.40ch11:3999243..4002830+ go_terms:GO:0033588 functional_description:"Elongator complex protein 4 (AHRD V1 ***- ELP4_BOVIN); contains Interpro domain(s) IPR008728 Elongator complex protein 4 "; GO:0033588 NbS00030069g0015.1 protein AED:0.34 eAED:0.35 QI:0|0.53|0.35|0.92|0.61|0.42|14|175|665; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=1e-164) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37970.1 (e_value=2e-151) | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrogenase 6 | chr4:17849672-17852145 FORWARD LENGTH=363;; (*ITAG) Solyc11g011340.1.1 (e_value=5e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00030069g0010.1 protein AED:0.36 eAED:0.36 QI:749|1|1|1|0.5|0.4|5|171|220; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=2e-98) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37970.1 (e_value=8e-82) | Symbols: ATCAD6, CAD6 | cinnamyl alcohol dehydrogenase 6 | chr4:17849672-17852145 FORWARD LENGTH=363;; (*ITAG) Solyc11g011340.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4388046-4390568 transcript_region:SL2.40ch11:4388046..4390568+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase (AHRD V1 ***- Q8KRC3_MYXXA); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbC26208175g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.8|1|1|1|5|1215|529; (*SWP) sp|P25776|ORYA_ORYSJ (e_value=0.0) Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2;; (*TAIR) AT1G47128.1 (e_value=0.0) | Symbols: RD21, RD21A | Granulin repeat cysteine protease family protein | chr1:17283139-17285609 REVERSE LENGTH=462;; (*ITAG) Solyc12g088670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62390540-62394311 transcript_region:SL2.40ch12:62390540..62394311- go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site IPR000668 Peptidase C1A, papain C-terminal "; GO:0006508,GO:0008234 NbS00003488g0015.1 protein AED:0.00 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|389; (*SWP) sp|P20075|LEAD8_DAUCA (e_value=9e-46) Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1;; (*TAIR) AT2G36640.1 (e_value=2e-46) | Symbols: ATECP63, ECP63 | embryonic cell protein 63 | chr2:15357019-15358552 REVERSE LENGTH=448;; (*ITAG) Solyc11g042800.1.1 (e_value=4e-59) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:34131958-34132474 transcript_region:SL2.40ch11:34131958..34132474- functional_description:"Late embryogenesis abundant protein (Fragment) (AHRD V1 *--- Q56ZD1_ARATH)"; NbS00003488g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|70; (*SWP) sp|Q9C9I8|ERF20_ARATH (e_value=1e-17) Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1;; (*TAIR) AT1G71520.1 (e_value=7e-19) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:26938612-26939043 FORWARD LENGTH=143;; (*ITAG) Solyc01g057080.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:51195128-51195469 transcript_region:SL2.40ch01:51195128..51195469- go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-*- ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00003488g0001.1 protein AED:0.03 eAED:0.03 QI:252|0|0.5|1|0|0.5|2|0|865; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=1e-111) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46730.1 (e_value=2e-72) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc12g009450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00027504g0003.1 protein AED:0.03 eAED:0.03 QI:24|1|1|1|0.55|0.7|10|7|621; (*SWP) sp|Q03468|ERCC6_HUMAN (e_value=2e-19) DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1;; (*TAIR) AT5G63950.1 (e_value=5e-54) | Symbols: CHR24 | chromatin remodeling 24 | chr5:25592160-25598405 REVERSE LENGTH=1090;; (*ITAG) Solyc01g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69804247-69818171 transcript_region:SL2.40ch01:69804247..69818171- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00026242g0007.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|73 NbS00026242g0006.1 protein AED:0.71 eAED:0.71 QI:6|0|0|0.5|0|0.5|2|0|199 NbS00026242g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|166; (*SWP) sp|O50003|RL12_PRUAR (e_value=8e-108) 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1;; (*TAIR) AT5G60670.1 (e_value=2e-105) | Symbols: | Ribosomal protein L11 family protein | chr5:24381066-24381566 REVERSE LENGTH=166;; (*ITAG) Solyc06g075180.1.1 (e_value=8e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43050786-43051286 transcript_region:SL2.40ch06:43050786..43051286+ go_terms:GO:0005515 functional_description:"Ribosomal protein L12 (AHRD V1 ***- A8J597_CHLRE); contains Interpro domain(s) IPR000911 Ribosomal protein L11 "; GO:0005515 NbS00059691g0005.1 protein AED:0.20 eAED:0.23 QI:136|0.77|0.6|1|0.44|0.7|10|0|618; (*SWP) sp|B9RUN8|GUF1_RICCO (e_value=0.0) Translation factor GUF1 homolog, mitochondrial OS=Ricinus communis GN=RCOM_0855130 PE=3 SV=1;; (*TAIR) AT5G39900.1 (e_value=0.0) | Symbols: | Small GTP-binding protein | chr5:15976719-15978925 REVERSE LENGTH=663;; (*ITAG) Solyc03g058880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:23797823-23806755 transcript_region:SL2.40ch03:23797823..23806755+ go_terms:GO:0043022,GO:0003746 functional_description:"GTP-binding protein lepA (AHRD V1 **** C9LSH1_9FIRM); contains Interpro domain(s) IPR006297 GTP-binding protein LepA "; GO:0043022,GO:0003746 NbS00013714g0101.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|450 NbS00013670g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0.5|1|0|0|2|64|164; (*TAIR) AT2G46300.1 (e_value=9e-20) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:19008392-19009247 FORWARD LENGTH=252;; (*ITAG) Solyc10g011750.2.1 (e_value=2e-60) genomic_reference:SL2.40ch10 gene_region:3990598-3992416 transcript_region:SL2.40ch10:3990598..3992416- functional_description:"NDR1/HIN1-Like protein 2 (AHRD V1 **-- B6TX37_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00013670g0009.1 protein AED:0.18 eAED:0.19 QI:529|0.87|0.77|1|0.87|0.77|9|0|291; (*SWP) sp|Q40784|AAPC_CENCI (e_value=5e-106) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT3G61610.1 (e_value=1e-126) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:22799480-22801029 FORWARD LENGTH=317;; (*ITAG) Solyc01g095470.2.1 (e_value=3e-147) genomic_reference:SL2.40ch01 gene_region:78476591-78482443 transcript_region:SL2.40ch01:78476591..78482443+ go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein (AHRD V1 ***- D7LSC1_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0005975 NbS00002466g0008.1 protein AED:0.33 eAED:0.33 QI:78|0.77|0.8|0.9|0.88|0.9|10|595|260; (*SWP) sp|Q9ZSZ8|FIP37_ARATH (e_value=1e-72) FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana GN=FIP37 PE=1 SV=1;; (*TAIR) AT3G54170.1 (e_value=1e-73) | Symbols: ATFIP37, FIP37 | FKBP12 interacting protein 37 | chr3:20056848-20059396 FORWARD LENGTH=330;; (*ITAG) Solyc03g112520.2.1 (e_value=2e-124) genomic_reference:SL2.40ch03 gene_region:56959636-56967859 transcript_region:SL2.40ch03:56959636..56967859- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing regulator WTAP (AHRD V1 *-*- B5X100_SALSA)"; GO:0005515 NbS00002466g0007.1 protein AED:0.32 eAED:0.72 QI:0|0|0|1|1|1|2|0|145 NbS00002466g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|475; (*ITAG) Solyc09g059390.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00030396g0006.1 protein AED:0.41 eAED:0.45 QI:0|0.5|0.44|0.88|0.25|0.33|9|0|361; (*SWP) sp|Q94KB7|MLO6_ARATH (e_value=1e-56) MLO-like protein 6 OS=Arabidopsis thaliana GN=MLO6 PE=2 SV=2;; (*TAIR) AT1G61560.4 (e_value=2e-58) | Symbols: MLO6 | Seven transmembrane MLO family protein | chr1:22708875-22711488 REVERSE LENGTH=521;; (*ITAG) Solyc04g049090.2.1 (e_value=2e-75) genomic_reference:SL2.40ch04 gene_region:38700445-38705951 transcript_region:SL2.40ch04:38700445..38705951- go_terms:GO:0016021 functional_description:"MLO-like protein 17 (AHRD V1 ***- C6EWF0_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00030396g0007.1 protein AED:0.55 eAED:0.55 QI:0|1|0|1|0|0|2|0|69 NbS00030396g0103.1 protein AED:0.13 eAED:0.12 QI:0|0.71|0.53|0.8|1|1|15|610|638 NbS00046993g0004.1 protein AED:0.27 eAED:0.28 QI:266|0.73|0.68|1|0.86|0.81|16|137|602; (*SWP) sp|P50433|GLYM_SOLTU (e_value=0.0) Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G37930.1 (e_value=0.0) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517;; (*ITAG) Solyc02g091560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47400296-47406791 transcript_region:SL2.40ch02:47400296..47406791+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** C6ZJZ0_SOYBN); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00013847g0007.1 protein AED:0.08 eAED:0.34 QI:0|0|0|1|0|0|3|0|144; (*TAIR) AT2G28710.1 (e_value=2e-13) | Symbols: | C2H2-type zinc finger family protein | chr2:12322974-12323444 FORWARD LENGTH=156;; (*ITAG) Solyc11g073060.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53255537-53256001 transcript_region:SL2.40ch11:53255537..53256001- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00025188g0013.1 protein AED:0.14 eAED:0.17 QI:0|0.55|0.4|1|0.22|0.4|10|0|334; (*TAIR) AT2G03390.1 (e_value=1e-120) | Symbols: | uvrB/uvrC motif-containing protein | chr2:1030635-1032354 REVERSE LENGTH=330;; (*ITAG) Solyc05g012620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5826134-5829446 transcript_region:SL2.40ch05:5826134..5829446+ go_terms:GO:0006289 functional_description:"Hemimethylated DNA binding protein (AHRD V1 *-*- B0T8J4_CAUSK); contains Interpro domain(s) IPR011722 Hemimethylated DNA-binding region "; GO:0006289 NbS00025188g0005.1 protein AED:0.11 eAED:0.18 QI:0|0.5|0.4|1|0.75|0.6|5|392|159; (*TAIR) AT2G03420.1 (e_value=5e-38) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1035100-1035937 REVERSE LENGTH=170;; (*ITAG) Solyc05g012600.2.1 (e_value=1e-56) genomic_reference:SL2.40ch05 gene_region:5809514-5811188 transcript_region:SL2.40ch05:5809514..5811188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025188g0011.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.75|1|1|1|4|305|156; (*SWP) sp|Q502K3|ANR52_DANRE (e_value=3e-17) Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1;; (*TAIR) AT2G03430.1 (e_value=2e-71) | Symbols: | Ankyrin repeat family protein | chr2:1036192-1037536 REVERSE LENGTH=240;; (*ITAG) Solyc05g012590.2.1 (e_value=2e-93) genomic_reference:SL2.40ch05 gene_region:5805482-5808679 transcript_region:SL2.40ch05:5805482..5808679+ go_terms:GO:0008134 functional_description:"Ankyrin repeat and KH domain-containing protein 1 (AHRD V1 **-- ANKH1_HUMAN); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00025188g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0|0.66|0.5|0.33|3|0|124; (*SWP) sp|Q9T068|EPFL2_ARATH (e_value=4e-24) EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1;; (*TAIR) AT4G37810.1 (e_value=3e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17780970-17781544 FORWARD LENGTH=128;; (*ITAG) Solyc04g077170.2.1 (e_value=2e-53) genomic_reference:SL2.40ch04 gene_region:59687124-59688129 transcript_region:SL2.40ch04:59687124..59688129- functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 2 (AHRD V1 ***- EPFL2_ARATH)"; NbS00021592g0019.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|1|0.5|0.33|3|226|171; (*SWP) sp|Q9LUM1|LOR11_ARATH (e_value=4e-29) Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1;; (*TAIR) AT3G14260.1 (e_value=3e-30) | Symbols: | Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230;; (*ITAG) Solyc08g080760.1.1 (e_value=1e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61138455-61139276 transcript_region:SL2.40ch08:61138455..61139276+ functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00021592g0018.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.25|1|0.66|0.5|4|0|240; (*SWP) sp|Q9SH27|LOR4_ARATH (e_value=2e-43) Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1;; (*TAIR) AT3G14260.1 (e_value=1e-43) | Symbols: | Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230;; (*ITAG) Solyc08g080750.2.1 (e_value=2e-121) genomic_reference:SL2.40ch08 gene_region:61123966-61125305 transcript_region:SL2.40ch08:61123966..61125305+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00021592g0016.1 protein AED:0.21 eAED:0.21 QI:84|1|1|1|0.75|0.6|5|371|797; (*TAIR) AT1G63300.1 (e_value=0.0) | Symbols: | Myosin heavy chain-related protein | chr1:23482193-23486067 FORWARD LENGTH=1029;; (*ITAG) Solyc08g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61145282-61151153 transcript_region:SL2.40ch08:61145282..61151153- functional_description:"SKIP interacting protein 24 (Fragment) (AHRD V1 *--- B8Q8B0_ORYSI)"; NbS00021592g0003.1 protein AED:0.38 eAED:0.42 QI:426|0.8|0.5|1|1|1|6|0|253; (*TAIR) AT5G41140.2 (e_value=9e-46) | Symbols: | Myosin heavy chain-related protein | chr5:16468726-16472546 FORWARD LENGTH=976;; (*ITAG) Solyc08g080780.2.1 (e_value=2e-110) genomic_reference:SL2.40ch08 gene_region:61145282-61151153 transcript_region:SL2.40ch08:61145282..61151153- functional_description:"SKIP interacting protein 24 (Fragment) (AHRD V1 *--- B8Q8B0_ORYSI)"; NbS00034912g0001.1 protein AED:0.47 eAED:0.78 QI:0|0|0|1|0|0|3|0|94; (*ITAG) Solyc11g044330.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:35459460-35460103 transcript_region:SL2.40ch11:35459460..35460103+ functional_description:"Zinc finger SWIM domain-containing protein 7 (AHRD V1 ***- B5X833_SALSA)"; NbS00015981g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|243; (*TAIR) AT2G12462.1 (e_value=6e-43) | Symbols: | BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:5050583-5051585 REVERSE LENGTH=249;; (*ITAG) Solyc07g007350.1.1 (e_value=1e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2091112-2091879 transcript_region:SL2.40ch07:2091112..2091879- functional_description:"Jp18 (AHRD V1 *-*- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00015981g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|434; (*SWP) sp|Q6AZB8|HARB1_DANRE (e_value=5e-13) Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1;; (*TAIR) AT1G72270.2 (e_value=1e-72) | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1). | chr1:27209890-27211122 REVERSE LENGTH=410;; (*ITAG) Solyc07g007360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2102542-2103882 transcript_region:SL2.40ch07:2102542..2103882- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00015981g0012.1 protein AED:0.12 eAED:0.12 QI:251|1|0.33|1|1|1|3|0|587; (*GB) gi|296084552|emb|CBI25573.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G80530.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc07g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2085682-2089699 transcript_region:SL2.40ch07:2085682..2089699+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00022640g0007.1 protein AED:0.18 eAED:0.18 QI:222|1|0.94|1|0.83|0.84|19|422|724; (*GB) gi|34481799|emb|CAC87835.1| (e_value=0.0) cullin 1A [Nicotiana tabacum];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=0.0) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=0.0) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc06g084520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45890280-45896870 transcript_region:SL2.40ch06:45890280..45896870- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase Cullin 4 (AHRD V1 **** D8RM97_SELML); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00002902g0006.1 protein AED:0.22 eAED:0.23 QI:129|0.76|0.78|1|0.76|0.85|14|154|472; (*GB) gi|7579025|gb|AAF64227.1|AF248647_1 (e_value=0.0) glucose acyltransferase [Solanum pennellii];; (*SWP) sp|Q9C7Z9|SCP18_ARATH (e_value=3e-131) Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2;; (*TAIR) AT5G09640.1 (e_value=9e-126) | Symbols: SNG2, SCPL19 | serine carboxypeptidase-like 19 | chr5:2988373-2990966 FORWARD LENGTH=465;; (*ITAG) Solyc10g049210.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:40070217-40074680 transcript_region:SL2.40ch10:40070217..40074680+ go_terms:GO:0016754 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TG69_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0016754 NbS00002902g0002.1 protein AED:0.21 eAED:0.39 QI:66|0|0|0.5|1|1|2|0|37; (*ITAG) Solyc01g106890.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:86361582-86362118 transcript_region:SL2.40ch01:86361582..86362118+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027679g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|95 NbS00046587g0006.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0|1|1|0.75|4|0|1248; (*GB) gi|17933110|gb|AAL48201.1|AF378084_1 (e_value=0.0) PNCBP [Solanum tuberosum];; (*TAIR) AT5G04020.1 (e_value=4e-27) | Symbols: | calmodulin binding | chr5:1081980-1086546 REVERSE LENGTH=1495;; (*ITAG) Solyc04g017750.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7961924-7966482 transcript_region:SL2.40ch04:7961924..7966482- functional_description:"Pathogen-induced calmodulin-binding protein (Fragment) (AHRD V1 *--- Q8H6W8_PHAVU); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00033480g0001.1 protein AED:0.16 eAED:0.18 QI:0|1|0.25|1|1|1|4|0|356; (*GB) gi|359497157|ref|XP_003635439.1| (e_value=3e-169) PREDICTED: ABC transporter G family member 11-like, partial [Vitis vinifera];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=4e-89) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=3e-90) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc05g051530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61038164-61040595 transcript_region:SL2.40ch05:61038164..61040595- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00051239g0015.1 protein AED:0.01 eAED:0.01 QI:164|0|0.5|1|0|0|2|591|117; (*GB) gi|255561084|ref|XP_002521554.1| (e_value=5e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g085010.1.1 (e_value=5e-49) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00051239g0014.1 protein AED:0.13 eAED:0.13 QI:282|0.75|0.66|1|0.75|0.77|9|126|1407; (*GB) gi|297735127|emb|CBI17489.3| (e_value=5e-93) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=7e-56) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT4G36520.1 (e_value=3e-74) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:17230589-17235435 REVERSE LENGTH=1422;; (*ITAG) Solyc02g085030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42632474-42639818 transcript_region:SL2.40ch02:42632474..42639818- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B8NTJ3_ASPFN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00051239g0010.1 protein AED:0.27 eAED:0.37 QI:0|0|0|1|1|1|2|0|70; (*ITAG) Solyc02g085010.1.1 (e_value=3e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:42621647-42622012 transcript_region:SL2.40ch02:42621647..42622012- functional_description:"Unknown Protein (AHRD V1)"; NbS00051239g0013.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.6|1|1|1|5|0|321; (*GB) gi|126211541|gb|ABN80438.1| (e_value=0.0) dihydroflavonol 4-reductase [Nicotiana benthamiana];; (*SWP) sp|P14720|DFRA_PETHY (e_value=0.0) Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2;; (*TAIR) AT5G42800.1 (e_value=9e-114) | Symbols: DFR, TT3, M318 | dihydroflavonol 4-reductase | chr5:17164296-17165864 REVERSE LENGTH=382;; (*ITAG) Solyc02g085020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42630321-42632725 transcript_region:SL2.40ch02:42630321..42632725+ go_terms:GO:0033729 functional_description:"Dihydroflavonol 4-reductase (AHRD V1 **** Q6WG03_SOLTU); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0033729 NbS00037241g0007.1 protein AED:0.19 eAED:0.19 QI:123|0.6|0.33|1|0.8|0.83|6|0|684; (*GB) gi|359477771|ref|XP_003632020.1| (e_value=0.0) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Vitis vinifera];; (*SWP) sp|O04847|DV4H_CATRO (e_value=1e-125) Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2;; (*TAIR) AT1G06620.1 (e_value=9e-121) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365;; (*ITAG) Solyc09g089790.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64812904-64814734 transcript_region:SL2.40ch09:64812904..64814734+ go_terms:GO:0010302,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0010302,GO:0009815 NbS00043430g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|3|0|295; (*GB) gi|3402279|emb|CAA04451.1| (e_value=0.0) putative beta-subunit of K+ channels [Solanum tuberosum];; (*SWP) sp|O23016|KCAB_ARATH (e_value=0.0) Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana GN=KAB1 PE=1 SV=1;; (*TAIR) AT1G04690.1 (e_value=0.0) | Symbols: KAB1, KV-BETA1 | potassium channel beta subunit 1 | chr1:1313662-1315420 FORWARD LENGTH=328;; (*ITAG) Solyc12g098150.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64110249-64114488 transcript_region:SL2.40ch12:64110249..64114488+ go_terms:GO:0055085,GO:0055114 functional_description:"Voltage-gated potassium channel beta subunit (AHRD V1 **-- B6T7A1_MAIZE); contains Interpro domain(s) IPR005399 Potassium channel, voltage-dependent, beta subunit, KCNAB-related "; GO:0055085,GO:0055114 NbS00043430g0003.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|67 NbS00043430g0007.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.66|1|1|3|0|139; (*GB) gi|76161012|gb|ABA40469.1| (e_value=2e-76) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=4e-71) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=3e-72) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=3e-80) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00001997g0009.1 protein AED:0.15 eAED:0.18 QI:0|0.75|0.4|1|0.5|0.4|5|522|476; (*GB) gi|14530683|dbj|BAB61054.1| (e_value=0.0) WRKY DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=1e-97) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=1e-98) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc02g088340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45045827-45048579 transcript_region:SL2.40ch02:45045827..45048579- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-c (AHRD V1 **** Q5DJV3_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00001997g0006.1 protein AED:0.32 eAED:0.32 QI:90|0.83|0.57|1|1|1|7|0|403; (*GB) gi|296082963|emb|CBI22264.3| (e_value=2e-163) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G29185.1 (e_value=7e-157) | Symbols: | Domain of unknown function (DUF3598) | chr3:11155092-11157207 REVERSE LENGTH=396;; (*ITAG) Solyc02g088350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45051124-45054896 transcript_region:SL2.40ch02:45051124..45054896- functional_description:"Genomic DNA chromosome 3 P1 clone MXO21 (AHRD V1 ***- Q9LS78_ARATH)"; NbS00000975g0005.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0|2|0|587; (*GB) gi|255586764|ref|XP_002534001.1| (e_value=3e-26) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9LFA2|KIPK_ARATH (e_value=1e-12) Serine/threonine-protein kinase KIPK OS=Arabidopsis thaliana GN=KIPK PE=1 SV=1;; (*TAIR) AT2G36350.1 (e_value=5e-17) | Symbols: | Protein kinase superfamily protein | chr2:15238903-15241864 FORWARD LENGTH=949;; (*ITAG) Solyc10g083500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62615655-62619797 transcript_region:SL2.40ch10:62615655..62619797+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- A7VL53_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00033364g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|225451966|ref|XP_002283242.1| (e_value=9e-107) PREDICTED: transcription factor AS1 [Vitis vinifera];; (*SWP) sp|Q94IB1|RS2_ORYSJ (e_value=2e-55) Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1;; (*TAIR) AT2G37630.1 (e_value=2e-52) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=8e-56) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00033364g0013.1 protein AED:0.13 eAED:0.13 QI:22|0|0|1|0.5|0|3|0|699; (*GB) gi|325516284|gb|ADZ24720.1| (e_value=4e-164) geranylgeranyl pyrophosphate synthase 3 [Solanum pennellii];; (*SWP) sp|Q42698|GGPPS_CATRO (e_value=2e-133) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1;; (*TAIR) AT4G36810.1 (e_value=3e-131) | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371;; (*ITAG) Solyc02g085710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43101343-43103432 transcript_region:SL2.40ch02:43101343..43103432+ go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q9SSU0_9ROSI); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00056835g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0|1|1|1|3|0|163; (*GB) gi|350534508|ref|NP_001233888.1| (e_value=9e-106) fructokinase-2 [Solanum lycopersicum];; (*SWP) sp|Q42896|SCRK2_SOLLC (e_value=3e-107) Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2;; (*TAIR) AT1G06030.1 (e_value=3e-92) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:1826880-1828130 FORWARD LENGTH=329;; (*ITAG) Solyc06g073190.2.1 (e_value=2e-108) genomic_reference:SL2.40ch06 gene_region:41483219-41485991 transcript_region:SL2.40ch06:41483219..41485991- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase-like (AHRD V1 **-* Q307Z3_SOLTU); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0008865,GO:0008959 NbS00056835g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|225434036|ref|XP_002274005.1| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100264616 [Vitis vinifera];; (*TAIR) AT2G43540.1 (e_value=3e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18072385-18072894 FORWARD LENGTH=169;; (*ITAG) Solyc06g073170.1.1 (e_value=9e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41474235-41474741 transcript_region:SL2.40ch06:41474235..41474741+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056835g0010.1 protein AED:0.26 eAED:0.26 QI:0|0|0.33|1|0.5|0.66|3|256|195; (*GB) gi|76160970|gb|ABA40448.1| (e_value=4e-92) fructokinase 2-like protein [Solanum tuberosum];; (*SWP) sp|Q9SID1|STH_ARATH (e_value=5e-53) Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2;; (*TAIR) AT2G31380.1 (e_value=4e-54) | Symbols: STH | salt tolerance homologue | chr2:13382150-13383302 FORWARD LENGTH=238;; (*ITAG) Solyc06g073180.2.1 (e_value=2e-92) genomic_reference:SL2.40ch06 gene_region:41479688-41483031 transcript_region:SL2.40ch06:41479688..41483031+ go_terms:GO:0003700,GO:0019904 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0003700,GO:0019904 NbS00057576g0008.1 protein AED:0.04 eAED:0.05 QI:167|0.5|0.33|1|1|1|3|0|251; (*GB) gi|21593842|gb|AAM65809.1| (e_value=1e-44) unknown [Arabidopsis thaliana];; (*SWP) sp|O04209|CLC2_ARATH (e_value=3e-46) Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1;; (*TAIR) AT2G40060.1 (e_value=2e-47) | Symbols: | Clathrin light chain protein | chr2:16726564-16728001 FORWARD LENGTH=258;; (*ITAG) Solyc09g014450.2.1 (e_value=1e-75) genomic_reference:SL2.40ch09 gene_region:6067468-6071263 transcript_region:SL2.40ch09:6067468..6071263+ go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00057576g0007.1 protein AED:0.21 eAED:0.21 QI:167|1|1|1|0.83|0.71|7|184|378; (*GB) gi|225440666|ref|XP_002274657.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 [Vitis vinifera];; (*SWP) sp|C0LGN2|Y3148_ARATH (e_value=1e-99) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1;; (*TAIR) AT3G09010.1 (e_value=4e-175) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc10g076760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59044149-59046083 transcript_region:SL2.40ch10:59044149..59046083+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- C6FF64_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027601g0010.1 protein AED:0.14 eAED:0.16 QI:0|0|0.2|1|0.5|0.2|5|0|420; (*GB) gi|224101077|ref|XP_002312133.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05840.1 (e_value=3e-162) | Symbols: | Protein of unknown function (DUF620) | chr5:1757268-1760458 REVERSE LENGTH=439;; (*ITAG) Solyc05g052860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62193632-62197050 transcript_region:SL2.40ch05:62193632..62197050+ functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00037393g0011.1 protein AED:0.30 eAED:0.30 QI:30|0.87|0.66|1|0.75|0.77|9|222|270; (*GB) gi|296089916|emb|CBI39735.3| (e_value=8e-155) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04630|SYTM_ARATH (e_value=2e-143) Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3;; (*TAIR) AT5G26830.1 (e_value=2e-144) | Symbols: | Threonyl-tRNA synthetase | chr5:9437351-9441568 FORWARD LENGTH=709;; (*ITAG) Solyc08g074550.2.1 (e_value=6e-173) genomic_reference:SL2.40ch08 gene_region:55812388-55826514 transcript_region:SL2.40ch08:55812388..55826514+ go_terms:GO:0006412,GO:0005737,GO:0000166 functional_description:"Threonyl-tRNA synthetase (AHRD V1 ***- Q17LW8_AEDAE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0006412,GO:0005737,GO:0000166 NbS00037393g0008.1 protein AED:0.06 eAED:0.06 QI:64|1|1|1|0.71|0.62|8|199|381; (*GB) gi|224108141|ref|XP_002314734.1| (e_value=3e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C7P8|LHWL1_ARATH (e_value=2e-15) Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1;; (*TAIR) AT1G60060.1 (e_value=1e-146) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr1:22139282-22141585 FORWARD LENGTH=386;; (*ITAG) Solyc05g005810.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:626359-628719 transcript_region:SL2.40ch05:626359..628719- functional_description:"Uncharacterized basic helix-loop-helix protein At1g06150 (AHRD V1 *-*- Y1615_ARATH)"; NbS00048983g0001.1 protein AED:0.36 eAED:0.40 QI:0|0|0|1|1|1|2|0|436; (*GB) gi|297739697|emb|CBI29879.3| (e_value=1e-124) unnamed protein product [Vitis vinifera];; (*SWP) sp|P15398|RPA1_SCHPO (e_value=3e-38) DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2;; (*TAIR) AT3G57660.1 (e_value=5e-101) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00031781g0010.1 protein AED:0.12 eAED:0.13 QI:563|1|0.78|1|1|1|14|0|2265; (*GB) gi|359489634|ref|XP_002276245.2| (e_value=0.0) PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera];; (*SWP) sp|Q6EVK6|BRM_ARATH (e_value=0.0) ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1;; (*TAIR) AT2G46020.2 (e_value=0.0) | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription regulatory protein SNF2, putative | chr2:18923304-18931769 FORWARD LENGTH=2193;; (*ITAG) Solyc01g094800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77968890-77980886 transcript_region:SL2.40ch01:77968890..77980886+ go_terms:GO:0030528,GO:0003677 functional_description:"Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--* CHD1_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0030528,GO:0003677 NbS00031781g0015.1 protein AED:0.65 eAED:0.67 QI:0|0|0|0.33|0.5|0.66|3|0|164; (*ITAG) Solyc11g007360.1.1 (e_value=3e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1725490-1726254 transcript_region:SL2.40ch11:1725490..1726254+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00031781g0014.1 protein AED:0.24 eAED:0.87 QI:0|0|0|1|0.5|0.66|3|0|241; (*GB) gi|224056751|ref|XP_002299005.1| (e_value=3e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T0J4|FB249_ARATH (e_value=1e-13) Putative F-box protein At4g38870 OS=Arabidopsis thaliana GN=At4g38870 PE=2 SV=1;; (*TAIR) AT4G38870.1 (e_value=8e-15) | Symbols: | F-box and associated interaction domains-containing protein | chr4:18132583-18133863 REVERSE LENGTH=426;; (*ITAG) Solyc09g091690.1.1 (e_value=1e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66286162-66287328 transcript_region:SL2.40ch09:66286162..66287328+ functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00031781g0009.1 protein AED:0.36 eAED:0.36 QI:284|0.6|0.83|0.83|0.4|0.5|6|147|168; (*GB) gi|356560787|ref|XP_003548669.1| (e_value=1e-102) PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Glycine max];; (*SWP) sp|P42749|UBC5_ARATH (e_value=1e-85) Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2;; (*TAIR) AT1G63800.1 (e_value=9e-87) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc01g094810.2.1 (e_value=3e-111) genomic_reference:SL2.40ch01 gene_region:77982018-77985335 transcript_region:SL2.40ch01:77982018..77985335- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 **** D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0004842 NbS00032130g0008.1 protein AED:0.34 eAED:0.37 QI:0|0.5|0|1|0.5|0.66|3|0|149; (*GB) gi|147865038|emb|CAN78967.1| (e_value=3e-15) hypothetical protein VITISV_027273 [Vitis vinifera];; (*ITAG) Solyc01g073870.2.1 (e_value=5e-63) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00032130g0010.1 protein AED:0.33 eAED:0.45 QI:0|0.5|0.66|1|0|0|3|177|101 NbS00002013g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|359483528|ref|XP_002266016.2| (e_value=2e-79) PREDICTED: uncharacterized protein LOC100256671 [Vitis vinifera];; (*TAIR) AT4G18650.1 (e_value=2e-64) | Symbols: | transcription factor-related | chr4:10264043-10265422 REVERSE LENGTH=232;; (*ITAG) Solyc02g073580.1.1 (e_value=4e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36326016-36326675 transcript_region:SL2.40ch02:36326016..36326675+ go_terms:GO:0005515 functional_description:"BZIP transcription factor (AHRD V1 **-- Q8W5R8_ORYSA)"; GO:0005515 NbS00002013g0001.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|71 NbS00002013g0011.1 protein AED:0.13 eAED:0.13 QI:836|0.91|1|1|0.83|0.84|13|185|677; (*GB) gi|225443782|ref|XP_002266057.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45840-like [Vitis vinifera];; (*SWP) sp|C0LGQ4|MRH1_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1;; (*TAIR) AT4G18640.1 (e_value=0.0) | Symbols: MRH1 | Leucine-rich repeat protein kinase family protein | chr4:10260481-10263577 FORWARD LENGTH=678;; (*ITAG) Solyc02g076660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36378345-36383412 transcript_region:SL2.40ch02:36378345..36383412- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00012366g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|230 NbS00012366g0005.1 protein AED:0.32 eAED:0.32 QI:82|0.83|0.71|1|1|1|7|0|257; (*GB) gi|225449863|ref|XP_002265279.1| (e_value=2e-146) PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Vitis vinifera];; (*SWP) sp|Q5PQR5|IMP4_RAT (e_value=4e-80) U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1;; (*TAIR) AT1G63780.1 (e_value=7e-129) | Symbols: IMP4 | Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294;; (*ITAG) Solyc01g007250.2.1 (e_value=7e-155) genomic_reference:SL2.40ch01 gene_region:1809283-1813878 transcript_region:SL2.40ch01:1809283..1813878- functional_description:"U3 small nucleolar ribonucleoprotein protein IMP4 (AHRD V1 ***- D0N3A6_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; NbS00053385g0002.1 protein AED:0.05 eAED:0.05 QI:100|1|1|1|0.25|0.2|5|220|199; (*GB) gi|225429027|ref|XP_002267686.1| (e_value=9e-34) PREDICTED: uncharacterized protein LOC100241214 [Vitis vinifera];; (*ITAG) Solyc01g106910.2.1 (e_value=2e-38) genomic_reference:SL2.40ch01 gene_region:86381562-86382592 transcript_region:SL2.40ch01:86381562..86382592- functional_description:"Unknown Protein (AHRD V1)"; NbS00002010g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|1|2|65|633; (*GB) gi|224139012|ref|XP_002322958.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SS80|U503A_ARATH (e_value=1e-92) UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1;; (*TAIR) AT2G38070.1 (e_value=3e-98) | Symbols: | Protein of unknown function (DUF740) | chr2:15928737-15930596 FORWARD LENGTH=619;; (*ITAG) Solyc10g085070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63714221-63716078 transcript_region:SL2.40ch10:63714221..63716078+ functional_description:"UPF0503 protein At3g09070, chloroplastic (AHRD V1 ***- U503A_ARATH); contains Interpro domain(s) IPR008004 Protein of unknown function DUF740 "; NbS00002010g0006.1 protein AED:0.11 eAED:0.11 QI:71|0.83|0.71|1|0.66|0.71|7|341|538; (*GB) gi|225440608|ref|XP_002273795.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251006 [Vitis vinifera];; (*TAIR) AT3G09090.1 (e_value=0.0) | Symbols: DEX1 | defective in exine formation protein (DEX1) | chr3:2782912-2787552 REVERSE LENGTH=896;; (*ITAG) Solyc10g085060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63693703-63702531 transcript_region:SL2.40ch10:63693703..63702531+ functional_description:"Defective in exine formation (AHRD V1 ***- Q9FV30_ARATH); contains Interpro domain(s) IPR013517 FG-GAP "; NbS00004059g0009.1 protein AED:0.18 eAED:0.18 QI:3|0.25|0.2|0.4|1|1|5|13|214; (*GB) gi|255562773|ref|XP_002522392.1| (e_value=3e-81) electron transporter, putative [Ricinus communis];; (*TAIR) AT5G66600.2 (e_value=2e-68) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26577954 REVERSE LENGTH=594;; (*ITAG) Solyc02g089980.2.1 (e_value=6e-88) genomic_reference:SL2.40ch02 gene_region:46247120-46250736 transcript_region:SL2.40ch02:46247120..46250736+ functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00004059g0010.1 protein AED:0.13 eAED:0.20 QI:0|0.75|0.4|1|0.75|0.6|5|0|715; (*GB) gi|22652123|gb|AAN03625.1|AF406701_1 (e_value=0.0) BEL1-related homeotic protein 22, partial [Solanum tuberosum];; (*SWP) sp|Q9SW80|BLH2_ARATH (e_value=1e-114) BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana GN=BLH2 PE=1 SV=3;; (*TAIR) AT4G36870.2 (e_value=1e-115) | Symbols: BLH2, SAW1 | BEL1-like homeodomain 2 | chr4:17369423-17373723 FORWARD LENGTH=739;; (*ITAG) Solyc02g065490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31220335-31228256 transcript_region:SL2.40ch02:31220335..31228256- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 4 (AHRD V1 **-- BLH4_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00004059g0003.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|2500717|sp|Q41495.1|ST14_SOLTU (e_value=4e-87) RecName: Full=STS14 protein; Flags: Precursor;; (*SWP) sp|Q41495|ST14_SOLTU (e_value=1e-88) STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1;; (*TAIR) AT5G66590.1 (e_value=7e-63) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr5:26574255-26574812 FORWARD LENGTH=185;; (*ITAG) Solyc02g065470.1.1 (e_value=6e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:31198798-31199340 transcript_region:SL2.40ch02:31198798..31199340+ go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 ***- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00014602g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|225424323|ref|XP_002284784.1| (e_value=9e-73) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-34) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G14890.1 (e_value=3e-60) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:5137045-5137704 FORWARD LENGTH=219;; (*ITAG) Solyc10g076730.1.1 (e_value=1e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00014602g0009.1 protein AED:0.29 eAED:0.29 QI:39|0.93|0.87|1|0.8|0.81|16|378|416; (*GB) gi|225446447|ref|XP_002276985.1| (e_value=0.0) PREDICTED: DDB1- and CUL4-associated factor 13 [Vitis vinifera];; (*SWP) sp|Q5ZLK1|DCA13_CHICK (e_value=1e-140) DDB1- and CUL4-associated factor 13 OS=Gallus gallus GN=DCAF13 PE=2 SV=1;; (*TAIR) AT4G28450.1 (e_value=0.0) | Symbols: | nucleotide binding;protein binding | chr4:14061724-14064582 REVERSE LENGTH=452;; (*ITAG) Solyc07g053660.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59431974-59438706 transcript_region:SL2.40ch07:59431974..59438706+ functional_description:"WD repeat protein (AHRD V1 **-- C4MAV3_ENTHI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00014602g0010.1 protein AED:0.54 eAED:0.69 QI:0|0.33|0|0.71|0.5|0.42|7|0|249; (*GB) gi|343172946|gb|AEL99176.1| (e_value=5e-91) 26S proteasome regulatory subunit N1, partial [Silene latifolia];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=3e-86) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=3e-87) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=3e-111) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00053274g0011.1 protein AED:0.33 eAED:0.34 QI:0|0.63|0.5|0.95|0.36|0.45|20|0|1059; (*GB) gi|291464071|gb|ADE05573.1| (e_value=0.0) increased size exclusion limit 2 [Nicotiana benthamiana];; (*SWP) sp|B9DFG3|ISE2_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2;; (*TAIR) AT1G70070.1 (e_value=0.0) | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171;; (*ITAG) Solyc05g006530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1145002-1155737 transcript_region:SL2.40ch05:1145002..1155737+ go_terms:GO:0003724 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** D9UDE3_9ACTO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0003724 NbS00053274g0008.1 protein AED:0.20 eAED:0.19 QI:497|0.84|0.70|0.96|0.80|0.74|27|0|1480; (*GB) gi|302399131|gb|ADL36860.1| (e_value=0.0) WRKY domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9SRH9|SNL1_ARATH (e_value=0.0) Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2;; (*TAIR) AT3G01320.2 (e_value=0.0) | Symbols: SNL1 | SIN3-like 1 | chr3:106730-113197 FORWARD LENGTH=1360;; (*ITAG) Solyc05g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1156675-1164853 transcript_region:SL2.40ch05:1156675..1164853- go_terms:GO:0016564 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0016564 NbS00000405g0013.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0.33|3|0|193; (*GB) gi|225438710|ref|XP_002282456.1| (e_value=2e-51) PREDICTED: uncharacterized protein LOC100250717 [Vitis vinifera];; (*TAIR) AT4G33985.1 (e_value=2e-41) | Symbols: | Protein of unknown function (DUF1685) | chr4:16288301-16288857 REVERSE LENGTH=154;; (*ITAG) Solyc02g090840.2.1 (e_value=9e-72) genomic_reference:SL2.40ch02 gene_region:46891264-46892524 transcript_region:SL2.40ch02:46891264..46892524- functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 ***- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00000405g0012.1 protein AED:0.37 eAED:0.45 QI:208|0.25|0.4|1|0.5|0.6|5|169|150 NbS00023111g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.33|1|0.5|0.33|3|0|551; (*GB) gi|354718776|gb|AER38245.1| (e_value=0.0) PME4 [Gossypium barbadense];; (*SWP) sp|Q43062|PME_PRUPE (e_value=0.0) Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1;; (*TAIR) AT4G33220.1 (e_value=0.0) | Symbols: PME44, ATPME44 | pectin methylesterase 44 | chr4:16022506-16026130 FORWARD LENGTH=525;; (*ITAG) Solyc07g017600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7622116-7627390 transcript_region:SL2.40ch07:7622116..7627390+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9P7W7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00043823g0001.1 protein AED:0.16 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|225444185|ref|XP_002269497.1| (e_value=4e-47) PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera];; (*SWP) sp|P10975|NLTPC_RICCO (e_value=6e-47) Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2;; (*TAIR) AT3G51590.1 (e_value=3e-18) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=4e-18) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00001775g0004.1 protein AED:0.24 eAED:0.24 QI:154|1|0.75|1|1|1|8|0|701; (*GB) gi|147814821|emb|CAN74748.1| (e_value=1e-147) hypothetical protein VITISV_012026 [Vitis vinifera];; (*SWP) sp|Q9ULD4|BRPF3_HUMAN (e_value=9e-22) Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2;; (*TAIR) AT1G20670.1 (e_value=7e-107) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc04g082530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63767730-63772749 transcript_region:SL2.40ch04:63767730..63772749- functional_description:"Bromodomain-containing protein (AHRD V1 ***- B9R8P3_RICCO); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00037950g0012.1 protein AED:0.17 eAED:0.17 QI:300|1|0.94|1|0.76|0.77|18|0|772; (*GB) gi|49523569|emb|CAF18246.1| (e_value=0.0) STY-L protein [Antirrhinum majus];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=3e-131) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.6 (e_value=0.0) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785;; (*ITAG) Solyc09g061290.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54200071-54207040 transcript_region:SL2.40ch09:54200071..54207040- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00037950g0011.1 protein AED:0.30 eAED:0.30 QI:269|1|0.66|1|1|0.66|3|0|403; (*GB) gi|225465455|ref|XP_002267492.1| (e_value=6e-162) PREDICTED: solute carrier family 35 member F5 [Vitis vinifera];; (*TAIR) AT3G07080.1 (e_value=1e-142) | Symbols: | EamA-like transporter family | chr3:2241360-2242934 FORWARD LENGTH=438;; (*ITAG) Solyc09g061320.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54256324-54260377 transcript_region:SL2.40ch09:54256324..54260377- go_terms:GO:0005515,GO:0022857 functional_description:"Solute carrier family 35 member F4 (AHRD V1 **-- C0HBH8_SALSA); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0005515,GO:0022857 NbS00037950g0002.1 protein AED:0.15 eAED:0.15 QI:178|1|1|1|0.6|0.33|6|144|267; (*GB) gi|297744348|emb|CBI37318.3| (e_value=2e-145) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6ICB0|PPDE2_HUMAN (e_value=2e-42) Desumoylating isopeptidase 1 OS=Homo sapiens GN=PPPDE2 PE=1 SV=1;; (*TAIR) AT3G07090.1 (e_value=4e-129) | Symbols: | PPPDE putative thiol peptidase family protein | chr3:2243153-2244476 REVERSE LENGTH=265;; (*ITAG) Solyc09g061310.2.1 (e_value=6e-166) genomic_reference:SL2.40ch09 gene_region:54244078-54246052 transcript_region:SL2.40ch09:54244078..54246052+ functional_description:"PPPDE peptidase domain containing 2a (AHRD V1 *--- Q6PC81_DANRE); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00019828g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|0|0|2|0|230; (*GB) gi|147855391|emb|CAN79614.1| (e_value=4e-54) hypothetical protein VITISV_027441 [Vitis vinifera];; (*SWP) sp|Q9M1K1|ORG2_ARATH (e_value=7e-43) Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1;; (*TAIR) AT3G56970.1 (e_value=5e-44) | Symbols: BHLH038, ORG2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:21084204-21085094 REVERSE LENGTH=253;; (*ITAG) Solyc10g079650.1.1 (e_value=8e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60476797-60478836 transcript_region:SL2.40ch10:60476797..60478836+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 ***- Q941Z7_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00019802g0002.1 protein AED:0.13 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|484; (*GB) gi|147862347|emb|CAN84022.1| (e_value=0.0) hypothetical protein VITISV_004991 [Vitis vinifera];; (*SWP) sp|P0C899|PP271_ARATH (e_value=1e-103) Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1;; (*TAIR) AT3G49142.1 (e_value=9e-105) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=686;; (*ITAG) Solyc07g042720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53574806-53576434 transcript_region:SL2.40ch07:53574806..53576434+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00019802g0011.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.33|1|1|3|0|122; (*GB) gi|224105095|ref|XP_002333862.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT2G04340.1 (e_value=1e-52) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1514411-1515203 FORWARD LENGTH=173;; (*ITAG) Solyc07g042710.2.1 (e_value=4e-51) genomic_reference:SL2.40ch07 gene_region:53564994-53574141 transcript_region:SL2.40ch07:53564994..53574141+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019802g0010.1 protein AED:0.14 eAED:0.14 QI:19|0.6|0.5|1|0.4|0.66|6|0|311; (*GB) gi|307940740|gb|ADN95984.1| (e_value=6e-102) G-strand specific single-stranded telomere-binding protein 2 [Nicotiana tabacum];; (*SWP) sp|P48809|RB27C_DROME (e_value=3e-33) Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2;; (*TAIR) AT3G13224.1 (e_value=1e-70) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4254848-4256014 FORWARD LENGTH=231;; (*ITAG) Solyc07g045240.2.1 (e_value=8e-98) genomic_reference:SL2.40ch07 gene_region:55694997-55697651 transcript_region:SL2.40ch07:55694997..55697651+ go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00035118g0001.1 protein AED:0.27 eAED:0.28 QI:0|1|0.5|1|1|1|4|0|192; (*GB) gi|13603408|dbj|BAB40974.1| (e_value=8e-136) isopentenyl diphosphate isomerase 2 [Nicotiana tabacum];; (*SWP) sp|O48965|IDI2_CAMAC (e_value=4e-129) Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1;; (*TAIR) AT3G02780.1 (e_value=4e-123) | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | chr3:602578-604648 REVERSE LENGTH=284;; (*ITAG) Solyc05g055760.2.1 (e_value=7e-137) genomic_reference:SL2.40ch05 gene_region:64415817-64419127 transcript_region:SL2.40ch05:64415817..64419127- go_terms:GO:0004452,GO:0042802 functional_description:"Isopentenyl-diphosphate delta-isomerase (AHRD V1 **** Q84RZ8_9GENT); contains Interpro domain(s) IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 "; GO:0004452,GO:0042802 NbS00029980g0002.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|1|1|3|0|123; (*GB) gi|255560329|ref|XP_002521181.1| (e_value=8e-60) iron-sulfur cluster assembly protein, putative [Ricinus communis];; (*SWP) sp|Q8LBM4|ISAM1_ARATH (e_value=4e-59) Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2;; (*TAIR) AT2G16710.1 (e_value=3e-60) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr2:7248294-7250013 FORWARD LENGTH=137;; (*ITAG) Solyc11g006920.1.1 (e_value=8e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1435246-1438449 transcript_region:SL2.40ch11:1435246..1438449+ go_terms:GO:0016226 functional_description:"Iron-sulfur cluster insertion protein erpA (AHRD V1 ***- ERPA_ALHEH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; GO:0016226 NbS00029980g0001.1 protein AED:0.36 eAED:0.36 QI:308|0|0.5|1|0|0.5|2|0|134; (*GB) gi|388497096|gb|AFK36614.1| (e_value=5e-67) unknown [Lotus japonicus];; (*SWP) sp|Q9ZQG8|FER3_ARATH (e_value=2e-57) Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1;; (*TAIR) AT2G27510.1 (e_value=1e-58) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g006910.1.1 (e_value=4e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1431026-1431403 transcript_region:SL2.40ch11:1431026..1431403- go_terms:GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0051536,GO:0022900 NbS00034327g0005.1 protein AED:0.33 eAED:0.33 QI:49|1|1|1|1|1|2|244|60; (*ITAG) Solyc08g078630.2.1 (e_value=8e-19) genomic_reference:SL2.40ch08 gene_region:59555779-59561775 transcript_region:SL2.40ch08:59555779..59561775- functional_description:"Unknown Protein (AHRD V1)"; NbS00034327g0006.1 protein AED:0.36 eAED:0.36 QI:17|0.66|0.25|1|0.33|0.5|4|57|124; (*ITAG) Solyc08g078630.2.1 (e_value=4e-16) genomic_reference:SL2.40ch08 gene_region:59555779-59561775 transcript_region:SL2.40ch08:59555779..59561775- functional_description:"Unknown Protein (AHRD V1)"; NbS00034327g0002.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|224143770|ref|XP_002325069.1| (e_value=2e-25) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9C598|NAC81_ARATH (e_value=3e-24) Protein ATAF2 OS=Arabidopsis thaliana GN=NAC081 PE=1 SV=1;; (*TAIR) AT5G08790.1 (e_value=2e-25) | Symbols: ATAF2, anac081 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr5:2859113-2860144 REVERSE LENGTH=283;; (*ITAG) Solyc10g083450.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62570813-62573756 transcript_region:SL2.40ch10:62570813..62573756- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HNX9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00013789g0002.1 protein AED:0.17 eAED:0.20 QI:0|0|0|0.83|0|0|6|0|285; (*ITAG) Solyc01g008430.1.1 (e_value=9e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2514786-2517198 transcript_region:SL2.40ch01:2514786..2517198- functional_description:"Unknown Protein (AHRD V1)"; NbS00013789g0116.1 protein AED:0.29 eAED:0.29 QI:304|0.6|0.83|0.83|1|1|6|101|377 NbS00013789g0117.1 protein AED:0.11 eAED:0.11 QI:116|0.8|0.83|1|0.8|0.83|6|603|518 NbS00013789g0118.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|201 NbS00018916g0012.1 protein AED:0.05 eAED:0.05 QI:80|1|1|1|0.75|0.8|5|239|489; (*GB) gi|224142439|ref|XP_002324565.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4KLQ5|WDR76_XENLA (e_value=6e-47) WD repeat-containing protein 76 OS=Xenopus laevis GN=wdr76 PE=2 SV=1;; (*TAIR) AT1G80710.1 (e_value=5e-155) | Symbols: DRS1 | DROUGHT SENSITIVE 1 | chr1:30333499-30335796 REVERSE LENGTH=516;; (*ITAG) Solyc02g014460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:7828623-7831839 transcript_region:SL2.40ch02:7828623..7831839- go_terms:GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 ***- C5JDC9_AJEDS); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00018916g0005.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.4|1|1|5|0|393; (*GB) gi|255551523|ref|XP_002516807.1| (e_value=4e-41) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=1e-40) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=1e-41) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc12g099550.1.1 (e_value=3e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00018916g0001.1 protein AED:0.71 eAED:0.71 QI:0|0.5|0|0.66|1|1|3|0|92; (*GB) gi|356564073|ref|XP_003550281.1| (e_value=2e-29) PREDICTED: isoleucyl-tRNA synthetase-like [Glycine max];; (*SWP) sp|Q5N1G1|SYI_SYNP6 (e_value=4e-29) Isoleucine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ileS PE=3 SV=1;; (*TAIR) AT5G49030.3 (e_value=1e-31) | Symbols: OVA2 | tRNA synthetase class I (I, L, M and V) family protein | chr5:19875091-19883251 REVERSE LENGTH=1279;; (*ITAG) Solyc01g080810.2.1 (e_value=4e-37) genomic_reference:SL2.40ch01 gene_region:72600989-72623881 transcript_region:SL2.40ch01:72600989..72623881+ go_terms:GO:0005737,GO:0003824 functional_description:"Isoleucyl-tRNA synthetase (AHRD V1 ***- Q9FI67_ARATH); contains Interpro domain(s) IPR002301 Isoleucyl-tRNA synthetase, class Ia IPR018353 Isoleucyl-tRNA synthetase "; GO:0005737,GO:0003824 NbS00041861g0005.1 protein AED:0.01 eAED:0.01 QI:40|1|1|1|1|1|2|43|185; (*GB) gi|225425098|ref|XP_002272514.1| (e_value=6e-30) PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=2e-26) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=1e-27) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=9e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00052643g0001.1 protein AED:0.11 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|258; (*GB) gi|224064147|ref|XP_002301392.1| (e_value=6e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT4G01140.1 (e_value=5e-33) | Symbols: | Protein of unknown function (DUF1191) | chr4:491012-491932 REVERSE LENGTH=306;; (*ITAG) Solyc01g095440.2.1 (e_value=1e-92) genomic_reference:SL2.40ch01 gene_region:78447430-78448513 transcript_region:SL2.40ch01:78447430..78448513+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00052643g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|176; (*GB) gi|388516601|gb|AFK46362.1| (e_value=2e-83) unknown [Medicago truncatula];; (*SWP) sp|Q9M153|GDL61_ARATH (e_value=2e-60) GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1;; (*TAIR) AT4G01130.1 (e_value=1e-61) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:485868-488007 FORWARD LENGTH=382;; (*ITAG) Solyc01g095450.2.1 (e_value=4e-100) genomic_reference:SL2.40ch01 gene_region:78449856-78452248 transcript_region:SL2.40ch01:78449856..78452248- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At4g01130 (AHRD V1 ***- GDL61_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00052643g0003.1 protein AED:0.44 eAED:1.00 QI:80|0|0|1|1|1|2|67|32 NbS00025702g0007.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.42|0.71|0.33|0.42|7|340|250; (*GB) gi|255551635|ref|XP_002516863.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g067700.2.1 (e_value=2e-65) genomic_reference:SL2.40ch01 gene_region:68979290-68994801 transcript_region:SL2.40ch01:68979290..68994801- functional_description:"Unknown Protein (AHRD V1)"; NbS00025702g0008.1 protein AED:0.22 eAED:0.49 QI:0|0|0|1|0|0|3|0|126; (*ITAG) Solyc04g050030.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00032844g0003.1 protein AED:0.03 eAED:0.04 QI:0|1|0.66|1|1|1|3|0|264; (*GB) gi|224092242|ref|XP_002309524.1| (e_value=3e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJL7|RAX2_ARATH (e_value=5e-72) Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1;; (*TAIR) AT2G36890.1 (e_value=4e-73) | Symbols: RAX2, MYB38, ATMYB38, BIT1 | Duplicated homeodomain-like superfamily protein | chr2:15485821-15487245 FORWARD LENGTH=298;; (*ITAG) Solyc12g008670.1.1 (e_value=2e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2049011-2050274 transcript_region:SL2.40ch12:2049011..2050274+ go_terms:GO:0003677,GO:0045449 functional_description:"Myb-related transcription factor (AHRD V1 *--- A7ULI0_DATME); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00007857g0003.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.5|1|0|0.25|4|0|348; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=4e-166) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=3e-109) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=2e-110) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=5e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00021179g0001.1 protein AED:0.41 eAED:0.84 QI:0|0|0.33|0.66|1|1|3|0|69 NbS00005887g0011.1 protein AED:0.01 eAED:0.01 QI:163|0.87|0.88|1|0.37|0.33|9|203|290; (*GB) gi|225435211|ref|XP_002284874.1| (e_value=3e-134) PREDICTED: phosphatidylinositol transfer protein 1-like [Vitis vinifera];; (*SWP) sp|Q9NCL8|PITP1_DICDI (e_value=1e-59) Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1;; (*ITAG) Solyc06g005100.2.1 (e_value=7e-111) genomic_reference:SL2.40ch06 gene_region:119977-124995 transcript_region:SL2.40ch06:119977..124995+ go_terms:GO:0008526 functional_description:"Phosphatidylinositol transfer protein expressed (AHRD V1 **** Q10N10_ORYSJ); contains Interpro domain(s) IPR001666 Phosphatidylinositol transfer protein "; GO:0008526 NbS00005887g0012.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|1|1|2|0|285; (*GB) gi|225435207|ref|XP_002284871.1| (e_value=2e-158) PREDICTED: uncharacterized protein LOC100260311 isoform 1 [Vitis vinifera];; (*TAIR) AT3G45600.1 (e_value=7e-146) | Symbols: TET3 | tetraspanin3 | chr3:16733973-16735854 REVERSE LENGTH=285;; (*ITAG) Solyc11g072480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52752185-52755602 transcript_region:SL2.40ch11:52752185..52755602- go_terms:GO:0016021 functional_description:"Senescence-associated protein (AHRD V1 ***- B6T9C5_MAIZE); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00021431g0004.1 protein AED:0.19 eAED:0.19 QI:234|1|0.5|1|1|1|4|0|115; (*GB) gi|359486763|ref|XP_002282343.2| (e_value=7e-54) PREDICTED: protein YIPF1 homolog [Vitis vinifera];; (*TAIR) AT2G39805.1 (e_value=4e-44) | Symbols: | Integral membrane Yip1 family protein | chr2:16610216-16612353 REVERSE LENGTH=275;; (*ITAG) Solyc05g052930.2.1 (e_value=5e-59) genomic_reference:SL2.40ch05 gene_region:62256443-62263477 transcript_region:SL2.40ch05:62256443..62263477+ go_terms:GO:0017137 functional_description:"Yip1 domain family (AHRD V1 **-- C5GSW7_AJEDR); contains Interpro domain(s) IPR006977 Yip1 domain "; GO:0017137 NbS00024221g0002.1 protein AED:0.34 eAED:0.34 QI:0|0.83|0.57|1|0.66|0.57|7|0|259; (*GB) gi|224124124|ref|XP_002319251.1| (e_value=4e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT1G65020.1 (e_value=7e-96) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319;; (*ITAG) Solyc03g097180.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:52943951-52951087 transcript_region:SL2.40ch03:52943951..52951087- functional_description:"(RAP Annotation release2) NERD domain containing protein (AHRD V1 ***- Q336N9_ORYSJ); contains Interpro domain(s) IPR011528 NERD "; NbS00041625g0001.1 protein AED:0.22 eAED:0.22 QI:348|0.88|0.84|1|0.83|0.78|19|0|692; (*GB) gi|356496154|ref|XP_003516935.1| (e_value=0.0) PREDICTED: mRNA-capping enzyme-like [Glycine max];; (*SWP) sp|O55236|MCE1_MOUSE (e_value=4e-87) mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1;; (*TAIR) AT3G09100.2 (e_value=0.0) | Symbols: | mRNA capping enzyme family protein | chr3:2788435-2792913 REVERSE LENGTH=672;; (*ITAG) Solyc09g011930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5190802-5203526 transcript_region:SL2.40ch09:5190802..5203526- go_terms:GO:0004484 functional_description:"mRNA-capping enzyme subunit alpha (AHRD V1 *-** B6JYQ9_SCHJY); contains Interpro domain(s) IPR017074 mRNA capping enzyme, bifunctional "; GO:0004484 NbS00021296g0013.1 protein AED:0.14 eAED:0.14 QI:79|1|0.85|1|0.66|0.42|7|0|303; (*GB) gi|147841260|emb|CAN75612.1| (e_value=1e-47) hypothetical protein VITISV_022290 [Vitis vinifera];; (*TAIR) AT5G38720.1 (e_value=3e-42) | Symbols: | unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). | chr5:15508417-15510472 REVERSE LENGTH=306;; (*ITAG) Solyc02g089600.2.1 (e_value=9e-85) genomic_reference:SL2.40ch02 gene_region:45940297-45945305 transcript_region:SL2.40ch02:45940297..45945305+ functional_description:"Ribosomal RNA-processing protein 7 homolog A (AHRD V1 *-*- RRP7A_HUMAN)"; NbS00021296g0014.1 protein AED:0.00 eAED:0.00 QI:77|1|1|1|1|1|3|7|65 NbS00021296g0012.1 protein AED:0.46 eAED:0.56 QI:2|0.5|0.33|1|0.5|0.33|3|0|61; (*GB) gi|22651883|gb|AAN03493.1|AF291761_1 (e_value=3e-16) uORF [Ipomoea batatas];; (*TAIR) AT3G02468.1 (e_value=2e-16) | Symbols: CPuORF9 | conserved peptide upstream open reading frame 9 | chr3:509815-510068 FORWARD LENGTH=52;; (*ITAG) Solyc01g010040.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:4683471-4687150 transcript_region:SL2.40ch01:4683471..4687150+ functional_description:"S-adenosylmethionine decarboxylase uORF (AHRD V1 *-*- Q6RUQ6_DAUCA); contains Interpro domain(s) IPR012511 S-adenosyl-l-methionine decarboxylase leader peptide "; NbS00021296g0011.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|395; (*GB) gi|164431178|gb|ABY55855.1| (e_value=0.0) S-adenosylmethionine decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|Q96471|DCAM_IPONI (e_value=1e-164) S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1;; (*TAIR) AT3G02470.4 (e_value=1e-134) | Symbols: | S-adenosylmethionine decarboxylase | chr3:510223-511323 FORWARD LENGTH=366;; (*ITAG) Solyc02g089610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45946477-45947565 transcript_region:SL2.40ch02:45946477..45947565- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00012437g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|28207685|gb|AAO32066.1| (e_value=7e-73) Erwinia induced protein 2 [Solanum tuberosum];; (*TAIR) AT5G17190.1 (e_value=9e-71) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5652310-5652702 FORWARD LENGTH=130;; (*ITAG) Solyc11g011010.1.1 (e_value=1e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4040728-4041120 transcript_region:SL2.40ch11:4040728..4041120+ functional_description:"Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)"; NbS00012437g0009.1 protein AED:0.31 eAED:0.31 QI:211|0.75|0.6|1|1|1|5|0|203; (*GB) gi|255570057|ref|XP_002525991.1| (e_value=2e-66) diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis];; (*SWP) sp|Q9LQU5|NUD18_ARATH (e_value=9e-61) Nudix hydrolase 18, mitochondrial OS=Arabidopsis thaliana GN=NUDT18 PE=2 SV=1;; (*TAIR) AT1G14860.1 (e_value=6e-62) | Symbols: atnudt18, NUDT18 | nudix hydrolase homolog 18 | chr1:5124993-5125805 FORWARD LENGTH=176;; (*ITAG) Solyc04g014500.2.1 (e_value=2e-127) genomic_reference:SL2.40ch04 gene_region:4729086-4732903 transcript_region:SL2.40ch04:4729086..4732903- go_terms:GO:0008486,GO:0034432 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase (AHRD V1 *--* B0WVR6_CULQU); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486,GO:0034432 NbS00018137g0007.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|342; (*GB) gi|389607304|dbj|BAM17523.1| (e_value=1e-119) N' tobamovirus resistance protein, partial [Nicotiana tabacum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=3e-25) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=2e-26) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc08g007630.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00018137g0002.1 protein AED:0.18 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|350; (*GB) gi|297812411|ref|XP_002874089.1| (e_value=3e-13) hypothetical protein ARALYDRAFT_910273 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G38870.1 (e_value=5e-12) | Symbols: | F-box and associated interaction domains-containing protein | chr4:18132583-18133863 REVERSE LENGTH=426;; (*ITAG) Solyc07g009430.1.1 (e_value=2e-139) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:4484153-4485280 transcript_region:SL2.40ch07:4484153..4485280+ functional_description:"F-box protein At2g16450 (AHRD V1 ***- FB108_ARATH); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00018137g0009.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|466; (*GB) gi|224124424|ref|XP_002319328.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15660.1 (e_value=1e-11) | Symbols: | F-box and associated interaction domains-containing protein | chr5:5095652-5097041 FORWARD LENGTH=438;; (*ITAG) Solyc07g009430.1.1 (e_value=2e-167) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:4484153-4485280 transcript_region:SL2.40ch07:4484153..4485280+ functional_description:"F-box protein At2g16450 (AHRD V1 ***- FB108_ARATH); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00021992g0004.1 protein AED:0.25 eAED:0.29 QI:0|0.92|0.73|1|0.85|0.93|15|0|417; (*GB) gi|225429361|ref|XP_002273029.1| (e_value=0.0) PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q8DHG3|SYW_THEEB (e_value=1e-136) Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1;; (*TAIR) AT2G25840.1 (e_value=0.0) | Symbols: OVA4 | Nucleotidylyl transferase superfamily protein | chr2:11021924-11025158 FORWARD LENGTH=408;; (*ITAG) Solyc12g095850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63305181-63315194 transcript_region:SL2.40ch12:63305181..63315194+ go_terms:GO:0005737 functional_description:"Tryptophanyl-tRNA synthetase (AHRD V1 ***- B4AZK3_9CHRO); contains Interpro domain(s) IPR002306 Tryptophanyl-tRNA synthetase, class Ib "; GO:0005737 NbS00000053g0011.1 protein AED:0.13 eAED:0.18 QI:0|0|0|1|1|1|3|0|448; (*GB) gi|358347102|ref|XP_003637601.1| (e_value=1e-176) DEAD-box ATP-dependent RNA helicase [Medicago truncatula];; (*SWP) sp|P93008|RH21_ARATH (e_value=7e-162) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1;; (*TAIR) AT2G33730.1 (e_value=5e-163) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14265679-14267880 REVERSE LENGTH=733;; (*ITAG) Solyc02g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39890643-39893115 transcript_region:SL2.40ch02:39890643..39893115+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** B7S8F6_9HYME); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00000053g0010.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|1|2|0|249; (*GB) gi|147853498|emb|CAN82292.1| (e_value=8e-78) hypothetical protein VITISV_016786 [Vitis vinifera];; (*TAIR) AT5G14120.1 (e_value=9e-69) | Symbols: | Major facilitator superfamily protein | chr5:4556308-4558447 FORWARD LENGTH=579;; (*ITAG) Solyc02g068140.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:32750441-32754156 transcript_region:SL2.40ch02:32750441..32754156- functional_description:"Nodulin-like protein (AHRD V1 ***- B6U8U8_MAIZE); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00000053g0017.1 protein AED:0.29 eAED:0.29 QI:151|1|1|1|0.6|0.66|6|134|202; (*GB) gi|13631844|sp|P92792.1|TOM20_SOLTU (e_value=2e-114) RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit;; (*SWP) sp|P92792|TOM20_SOLTU (e_value=7e-116) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=1e-80) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g068130.2.1 (e_value=3e-116) genomic_reference:SL2.40ch02 gene_region:32744250-32750308 transcript_region:SL2.40ch02:32744250..32750308+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00000053g0016.1 protein AED:0.27 eAED:0.29 QI:0|0|0|1|0|0|2|0|210; (*GB) gi|224060265|ref|XP_002300113.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*TAIR) AT3G01930.2 (e_value=4e-47) | Symbols: | Major facilitator superfamily protein | chr3:319289-321488 REVERSE LENGTH=584;; (*ITAG) Solyc02g094190.2.1 (e_value=1e-74) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00000053g0015.1 protein AED:0.39 eAED:0.47 QI:0|0|0|1|0|0|2|0|100; (*GB) gi|147853498|emb|CAN82292.1| (e_value=1e-23) hypothetical protein VITISV_016786 [Vitis vinifera];; (*TAIR) AT5G14120.1 (e_value=5e-20) | Symbols: | Major facilitator superfamily protein | chr5:4556308-4558447 FORWARD LENGTH=579;; (*ITAG) Solyc02g068140.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:32750441-32754156 transcript_region:SL2.40ch02:32750441..32754156- functional_description:"Nodulin-like protein (AHRD V1 ***- B6U8U8_MAIZE); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00046185g0001.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.72|0.90|0.9|0.81|11|868|342; (*GB) gi|225436583|ref|XP_002274972.1| (e_value=5e-140) PREDICTED: uncharacterized protein At2g37660, chloroplastic [Vitis vinifera];; (*SWP) sp|O80934|Y2766_ARATH (e_value=4e-17) Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2;; (*TAIR) AT4G31530.1 (e_value=1e-131) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:15282281-15284064 FORWARD LENGTH=324;; (*ITAG) Solyc01g008920.2.1 (e_value=7e-167) genomic_reference:SL2.40ch01 gene_region:2941572-2947566 transcript_region:SL2.40ch01:2941572..2947566+ go_terms:GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 **-- Q10L97_ORYSJ); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0008152 NbS00046185g0007.1 protein AED:0.34 eAED:0.36 QI:25|1|0.8|1|0.25|0.6|5|514|94; (*GB) gi|350540104|ref|NP_001234133.1| (e_value=2e-55) phytochromobilin synthase [Solanum lycopersicum];; (*SWP) sp|Q9SR43|PFBS_ARATH (e_value=1e-33) Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1;; (*TAIR) AT3G09150.3 (e_value=2e-35) | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2) | chr3:2804085-2805333 FORWARD LENGTH=250;; (*ITAG) Solyc01g008930.2.1 (e_value=4e-58) genomic_reference:SL2.40ch01 gene_region:2948574-2955890 transcript_region:SL2.40ch01:2948574..2955890- go_terms:GO:0050619 functional_description:"Phycoerythrobilin ferredoxin oxidoreductase (AHRD V1 **** Q6E5A3_MAIZE); contains Interpro domain(s) IPR009249 Ferredoxin-dependent bilin reductase "; GO:0050619 NbS00009148g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|359494760|ref|XP_002266441.2| (e_value=4e-69) PREDICTED: uncharacterized protein LOC100267033 [Vitis vinifera];; (*SWP) sp|Q9SRR7|CML3_ARATH (e_value=1e-68) Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1;; (*TAIR) AT3G07490.1 (e_value=9e-70) | Symbols: AGD11 | ARF-GAP domain 11 | chr3:2391189-2391650 FORWARD LENGTH=153;; (*ITAG) Solyc09g055880.1.1 (e_value=4e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:41606762-41607214 transcript_region:SL2.40ch09:41606762..41607214- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q6RZU7_MUSAC); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00009148g0012.1 protein AED:0.11 eAED:0.12 QI:0|0.66|0.75|1|0.33|0.25|4|0|496; (*GB) gi|225448146|ref|XP_002263852.1| (e_value=9e-132) PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=1e-94) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT3G25440.1 (e_value=7e-96) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr3:9223998-9225505 FORWARD LENGTH=444;; (*ITAG) Solyc06g082990.2.1 (e_value=5e-166) genomic_reference:SL2.40ch06 gene_region:44864363-44871826 transcript_region:SL2.40ch06:44864363..44871826- go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00009148g0011.1 protein AED:0.71 eAED:0.80 QI:0|0.5|0|1|0.5|0.66|3|0|240; (*GB) gi|255572672|ref|XP_002527269.1| (e_value=1e-97) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=1e-12) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT2G43280.1 (e_value=2e-31) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr2:17989739-17990861 FORWARD LENGTH=206;; (*ITAG) Solyc09g057880.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:47291339-47302811 transcript_region:SL2.40ch09:47291339..47302811+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 *--- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00004975g0006.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0|0.33|3|0|163; (*GB) gi|225455185|ref|XP_002269275.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100241862 [Vitis vinifera];; (*TAIR) AT5G24580.1 (e_value=2e-43) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:8410394-8412087 REVERSE LENGTH=319;; (*ITAG) Solyc03g080100.2.1 (e_value=1e-46) genomic_reference:SL2.40ch03 gene_region:45553244-45555756 transcript_region:SL2.40ch03:45553244..45555756+ go_terms:GO:0030001 functional_description:"Copper-translocating P-type ATPase (AHRD V1 *--- Q3JHP1_BURP1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00004975g0004.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|133; (*GB) gi|388329750|gb|AFK29266.1| (e_value=3e-38) small auxin-up protein 58 [Solanum lycopersicum];; (*TAIR) AT2G46690.1 (e_value=4e-21) | Symbols: | SAUR-like auxin-responsive protein family | chr2:19180904-19181269 FORWARD LENGTH=121;; (*ITAG) Solyc06g053260.1.1 (e_value=6e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32473512-32473901 transcript_region:SL2.40ch06:32473512..32473901+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LF78_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00038396g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|0.66|0.5|4|0|286; (*GB) gi|350538999|ref|NP_001234369.1| (e_value=0.0) xyloglucan endotransglycosylase precursor [Solanum lycopersicum];; (*SWP) sp|P93349|XTH_TOBAC (e_value=0.0) Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1;; (*TAIR) AT5G13870.1 (e_value=5e-146) | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase 5 | chr5:4475089-4476217 REVERSE LENGTH=293;; (*ITAG) Solyc11g065600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48201885-48204227 transcript_region:SL2.40ch11:48201885..48204227- go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 6 (AHRD V1 ***- C0IRG5_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00038396g0009.1 protein AED:0.12 eAED:0.12 QI:201|1|1|1|1|1|5|234|376; (*GB) gi|317451426|emb|CBV37053.1| (e_value=1e-145) GDSL lipase-like chlorogenate-dependent caffeoyltransferase precursor [Solanum lycopersicum];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=6e-94) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=4e-95) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc01g099050.2.1 (e_value=4e-171) genomic_reference:SL2.40ch01 gene_region:81149642-81151267 transcript_region:SL2.40ch01:81149642..81151267- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00053192g0010.1 protein AED:0.19 eAED:0.25 QI:131|0.66|0.71|1|1|1|7|0|178; (*GB) gi|359484115|ref|XP_002267697.2| (e_value=3e-28) PREDICTED: high mobility group B protein 7-like [Vitis vinifera];; (*SWP) sp|Q8LDF9|HMGB7_ARATH (e_value=5e-21) High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1;; (*TAIR) AT5G23420.2 (e_value=3e-23) | Symbols: HMGB6 | high-mobility group box 6 | chr5:7888657-7890111 REVERSE LENGTH=157;; (*ITAG) Solyc04g008820.2.1 (e_value=2e-50) genomic_reference:SL2.40ch04 gene_region:2435267-2437869 transcript_region:SL2.40ch04:2435267..2437869+ go_terms:GO:0003700 functional_description:"HMG transcription factor (Fragment) (AHRD V1 *--* Q676W2_HYAOR); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003700 NbS00053192g0013.1 protein AED:0.28 eAED:0.28 QI:124|1|0.75|1|0.66|0.5|4|0|184; (*GB) gi|18409234|ref|NP_566942.1| (e_value=6e-51) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G51010.1 (e_value=1e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18946880-18948048 REVERSE LENGTH=188;; (*ITAG) Solyc04g008800.2.1 (e_value=4e-90) genomic_reference:SL2.40ch04 gene_region:2427020-2430714 transcript_region:SL2.40ch04:2427020..2430714+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053192g0005.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|601; (*GB) gi|225463775|ref|XP_002267653.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-55) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT5G23400.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7880603-7882372 FORWARD LENGTH=589;; (*ITAG) Solyc04g008830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2438053-2439834 transcript_region:SL2.40ch04:2438053..2439834- go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00053192g0012.1 protein AED:0.23 eAED:0.23 QI:189|1|1|1|1|1|5|335|126; (*GB) gi|351725819|ref|NP_001235570.1| (e_value=1e-37) uncharacterized protein LOC100305706 [Glycine max];; (*SWP) sp|Q9LYK9|RS263_ARATH (e_value=9e-35) 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1;; (*TAIR) AT3G56340.1 (e_value=7e-36) | Symbols: | Ribosomal protein S26e family protein | chr3:20892309-20893343 REVERSE LENGTH=130;; (*ITAG) Solyc06g007470.2.1 (e_value=3e-43) genomic_reference:SL2.40ch06 gene_region:1479427-1482088 transcript_region:SL2.40ch06:1479427..1482088- go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00053192g0015.1 protein AED:0.11 eAED:0.14 QI:0|0|0|1|0|0|3|0|241; (*GB) gi|224134893|ref|XP_002321931.1| (e_value=6e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G58660.1 (e_value=4e-35) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc04g008790.1.1 (e_value=9e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2424815-2425648 transcript_region:SL2.40ch04:2424815..2425648- go_terms:GO:0006396 functional_description:"LOC563247 protein (Fragment) (AHRD V1 **-- Q3B7F4_DANRE); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00040076g0011.1 protein AED:0.22 eAED:0.22 QI:40|0.8|0.66|1|0.6|0.5|6|657|463; (*GB) gi|225466287|ref|XP_002270291.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266835 [Vitis vinifera];; (*TAIR) AT5G32470.1 (e_value=0.0) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc04g050190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44946920-44956676 transcript_region:SL2.40ch04:44946920..44956676+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- D2SGM4_GEOOG); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00040076g0013.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0|0|2|0|238; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=5e-106) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=9e-87) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=2e-80) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=8e-102) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00040076g0015.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|113; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=1e-48) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9M156|U72B1_ARATH (e_value=4e-41) UDP-glycosyltransferase 72B1 OS=Arabidopsis thaliana GN=UGT72B1 PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=3e-42) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00019125g0004.1 protein AED:0.28 eAED:0.32 QI:45|0.33|0.42|0.85|1|0.85|7|0|356; (*GB) gi|255571218|ref|XP_002526559.1| (e_value=5e-110) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=1e-17) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT5G29000.2 (e_value=7e-54) | Symbols: PHL1 | Homeodomain-like superfamily protein | chr5:11022336-11024229 REVERSE LENGTH=413;; (*ITAG) Solyc09g072830.2.1 (e_value=2e-165) genomic_reference:SL2.40ch09 gene_region:61018842-61025055 transcript_region:SL2.40ch09:61018842..61025055- go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 **-- D7M706_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00026669g0006.1 protein AED:0.16 eAED:0.16 QI:98|1|1|1|0.33|0.5|4|267|186; (*GB) gi|225429027|ref|XP_002267686.1| (e_value=2e-21) PREDICTED: uncharacterized protein LOC100241214 [Vitis vinifera];; (*ITAG) Solyc01g106910.2.1 (e_value=3e-34) genomic_reference:SL2.40ch01 gene_region:86381562-86382592 transcript_region:SL2.40ch01:86381562..86382592- functional_description:"Unknown Protein (AHRD V1)"; NbS00026669g0001.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|122|229; (*GB) gi|224091795|ref|XP_002309354.1| (e_value=4e-25) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g048140.1.1 (e_value=1e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:39854881-39855989 transcript_region:SL2.40ch10:39854881..39855989+ go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00026669g0008.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|180; (*GB) gi|224103801|ref|XP_002313198.1| (e_value=4e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=8e-27) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=6e-28) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106710.1.1 (e_value=1e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86230371-86231036 transcript_region:SL2.40ch01:86230371..86231036- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00001645g0010.1 protein AED:0.22 eAED:0.22 QI:272|0.83|1|1|0.66|0.71|7|557|162; (*GB) gi|225454777|ref|XP_002277013.1| (e_value=2e-74) PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform 1 [Vitis vinifera];; (*SWP) sp|Q9Y3E5|PTH2_HUMAN (e_value=6e-30) Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1;; (*TAIR) AT5G16870.1 (e_value=2e-63) | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family protein | chr5:5546975-5548542 REVERSE LENGTH=169;; (*ITAG) Solyc12g077590.1.1 (e_value=1e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:59475108-59480130 transcript_region:SL2.40ch12:59475108..59480130+ go_terms:GO:0006412 functional_description:"Peptidyl-tRNA hydrolase 2 (AHRD V1 ***- B4FSD3_MAIZE); contains Interpro domain(s) IPR002833 Peptidyl-tRNA hydrolase, PTH2 "; GO:0006412 NbS00001645g0011.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.75|0.8|5|0|243; (*GB) gi|380853848|gb|AFE88231.1| (e_value=1e-159) beta-keto-ACP synthase [Nicotiana tabacum];; (*SWP) sp|P49245|FABH2_CUPWR (e_value=1e-135) 3-oxoacyl-[acyl-carrier-protein] synthase 3 B, chloroplastic OS=Cuphea wrightii GN=KAS3B PE=2 SV=1;; (*TAIR) AT1G62640.2 (e_value=1e-131) | Symbols: KAS III | 3-ketoacyl-acyl carrier protein synthase III | chr1:23192502-23194737 FORWARD LENGTH=404;; (*ITAG) Solyc08g006560.2.1 (e_value=2e-150) genomic_reference:SL2.40ch08 gene_region:1170545-1174964 transcript_region:SL2.40ch08:1170545..1174964+ go_terms:GO:0008137 functional_description:"3-oxoacyl- (AHRD V1 ***- A8YCB5_MICAE); contains Interpro domain(s) IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH) "; GO:0008137 NbS00027854g0008.1 protein AED:0.08 eAED:0.09 QI:0|0.33|0.25|0.5|1|0.75|4|0|252; (*GB) gi|224119516|ref|XP_002331180.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT1G72490.1 (e_value=2e-59) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27289435-27290732 REVERSE LENGTH=287;; (*ITAG) Solyc12g049380.1.1 (e_value=1e-98) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46379294-46381525 transcript_region:SL2.40ch12:46379294..46381525+ functional_description:"F1L3.5 (AHRD V1 **-- Q9LNR9_ARATH)"; NbS00027854g0007.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|1|1|1|3|0|143; (*GB) gi|147788942|emb|CAN64848.1| (e_value=1e-44) hypothetical protein VITISV_036158 [Vitis vinifera];; (*TAIR) AT1G62610.4 (e_value=4e-38) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:23181531-23182454 REVERSE LENGTH=282;; (*ITAG) Solyc10g078360.1.1 (e_value=2e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59509321-59510895 transcript_region:SL2.40ch10:59509321..59510895- go_terms:GO:0008152,GO:0055114 functional_description:"3-oxoacyl-reductase (AHRD V1 **-- B6UEX0_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00029232g0005.1 protein AED:0.19 eAED:0.39 QI:39|-1|0|1|-1|1|1|54|40 NbS00029232g0012.1 protein AED:0.11 eAED:0.11 QI:158|0.88|0.89|1|0.72|0.73|19|287|951; (*GB) gi|359487304|ref|XP_002277709.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265428 [Vitis vinifera];; (*SWP) sp|Q620W3|EFR3_CAEBR (e_value=9e-13) Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3 SV=1;; (*TAIR) AT5G21080.1 (e_value=0.0) | Symbols: | Uncharacterized protein | chr5:7158035-7162906 REVERSE LENGTH=1025;; (*ITAG) Solyc01g087450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74178496-74185824 transcript_region:SL2.40ch01:74178496..74185824+ functional_description:"Cyclin-like protein (AHRD V1 ***- Q6ZIX9_ORYSJ)"; NbS00029232g0008.1 protein AED:0.20 eAED:0.20 QI:181|1|1|1|1|1|7|218|356; (*GB) gi|356528104|ref|XP_003532645.1| (e_value=2e-116) PREDICTED: probable protein phosphatase 2C 28-like [Glycine max];; (*SWP) sp|O64583|P2C28_ARATH (e_value=3e-115) Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=2;; (*TAIR) AT2G34740.1 (e_value=2e-116) | Symbols: | Protein phosphatase 2C family protein | chr2:14658730-14660305 FORWARD LENGTH=339;; (*ITAG) Solyc01g087460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74186001-74188784 transcript_region:SL2.40ch01:74186001..74188784+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q6QLU0_SOLLC); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00034380g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|541|231; (*GB) gi|224085796|ref|XP_002307699.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43434|VATL_GOSHI (e_value=6e-76) V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=1e-76) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=2e-77) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00034380g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|1155; (*GB) gi|145666466|gb|ABP88740.1| (e_value=0.0) putative receptor-like protein kinase [Capsicum frutescens];; (*SWP) sp|C0LGS2|Y4361_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1;; (*TAIR) AT4G36180.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:17120209-17123698 REVERSE LENGTH=1136;; (*ITAG) Solyc02g084370.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42059902-42063285 transcript_region:SL2.40ch02:42059902..42063285- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000054g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|282; (*GB) gi|356577592|ref|XP_003556908.1| (e_value=9e-170) PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Glycine max];; (*SWP) sp|O19071|MGAT2_PIG (e_value=7e-42) Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Sus scrofa GN=MGAT2 PE=3 SV=1;; (*TAIR) AT2G05320.1 (e_value=2e-166) | Symbols: | beta-1,2-N-acetylglucosaminyltransferase II | chr2:1936016-1937308 FORWARD LENGTH=430;; (*ITAG) Solyc07g045470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55929219-55930481 transcript_region:SL2.40ch07:55929219..55930481+ go_terms:GO:0008455 functional_description:"Alpha-1 6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (AHRD V1 **** B5X4D8_SALSA); contains Interpro domain(s) IPR007754 N-acetylglucosaminyltransferase II "; GO:0008455 NbS00000054g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|0.66|3|0|301; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-20) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=7e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00000060g0018.1 protein AED:0.12 eAED:0.12 QI:11|0.90|0.83|1|0.72|0.75|12|311|431; (*GB) gi|8439539|gb|AAF74980.1|AF082890_1 (e_value=0.0) cystathionine beta-lyase [Solanum tuberosum];; (*SWP) sp|P53780|METC_ARATH (e_value=0.0) Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1;; (*TAIR) AT3G57050.1 (e_value=0.0) | Symbols: CBL | cystathionine beta-lyase | chr3:21111939-21114521 REVERSE LENGTH=464;; (*ITAG) Solyc10g079720.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60540899-60547437 transcript_region:SL2.40ch10:60540899..60547437- go_terms:GO:0006520,GO:0071266,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- C1PDC6_BACCO); contains Interpro domain(s) IPR006238 Cystathionine beta-lyase, eukaryotic "; GO:0006520,GO:0071266,GO:0030170 NbS00000060g0017.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.5|1|0.6|0.5|6|150|359; (*GB) gi|356512495|ref|XP_003524954.1| (e_value=6e-175) PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Glycine max];; (*SWP) sp|Q8W496|PTC52_ARATH (e_value=3e-144) Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1;; (*TAIR) AT4G25650.1 (e_value=3e-149) | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like | chr4:13081021-13083153 REVERSE LENGTH=536;; (*ITAG) Solyc04g040160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31076099-31081223 transcript_region:SL2.40ch04:31076099..31081223- go_terms:GO:0051536,GO:0032441 functional_description:"Pheophorbide a oxygenase (AHRD V1 **-* B6ST74_MAIZE); contains Interpro domain(s) IPR013626 Pheophorbide a oxygenase "; GO:0051536,GO:0032441 NbS00000060g0005.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|632; (*GB) gi|359481906|ref|XP_003632690.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g35030, mitochondrial-like [Vitis vinifera];; (*SWP) sp|O64766|PP185_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1;; (*TAIR) AT2G35030.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:14761080-14762963 REVERSE LENGTH=627;; (*ITAG) Solyc04g039940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:30680282-30683513 transcript_region:SL2.40ch04:30680282..30683513- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LHR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00000060g0003.1 protein AED:0.29 eAED:0.29 QI:170|1|1|1|0.57|0.62|8|338|321; (*GB) gi|224089993|ref|XP_002308897.1| (e_value=5e-125) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10250.2 (e_value=2e-109) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc10g079710.1.1 (e_value=1e-129) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60536606-60540135 transcript_region:SL2.40ch10:60536606..60540135+ functional_description:"Uncharacterized plant-specific domain 01589 (AHRD V1 ***- A2Q300_MEDTR); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00029189g0002.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|82; (*ITAG) Solyc11g056510.1.1 (e_value=8e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43184398-43184778 transcript_region:SL2.40ch11:43184398..43184778+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044287g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.71|0.5|0.87|1|1|8|544|820; (*GB) gi|5814093|gb|AAD52097.1|AF088885_1 (e_value=0.0) receptor-like kinase CHRK1 [Nicotiana tabacum];; (*SWP) sp|O64793|Y1675_ARATH (e_value=1e-100) G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 OS=Arabidopsis thaliana GN=At1g67520 PE=2 SV=3;; (*TAIR) AT4G23290.1 (e_value=2e-102) | Symbols: CRK21 | cysteine-rich RLK (RECEPTOR-like protein kinase) 21 | chr4:12177910-12180669 REVERSE LENGTH=600;; (*ITAG) Solyc07g005110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:128660-133395 transcript_region:SL2.40ch07:128660..133395+ go_terms:GO:0006032,GO:0005975,GO:0006468 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 *-*- Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006032,GO:0005975,GO:0006468 NbS00043950g0001.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|70; (*GB) gi|56744187|dbj|BAD81033.1| (e_value=2e-37) potassium channel NKT2 [Nicotiana tabacum];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=1e-19) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=1e-20) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=7e-33) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00050060g0006.1 protein AED:0.19 eAED:0.34 QI:0|0|0|1|1|1|2|0|166; (*GB) gi|1706740|sp|P52837.1|F4ST_FLACH (e_value=2e-28) RecName: Full=Flavonol 4'-sulfotransferase; Short=F4-ST;; (*SWP) sp|P52837|F4ST_FLACH (e_value=6e-30) Flavonol 4'-sulfotransferase OS=Flaveria chlorifolia PE=1 SV=1;; (*TAIR) AT1G13420.1 (e_value=7e-23) | Symbols: ATST4B, ST4B | sulfotransferase 4B | chr1:4604871-4605866 FORWARD LENGTH=331;; (*ITAG) Solyc02g077620.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37081609-37082670 transcript_region:SL2.40ch02:37081609..37082670- go_terms:GO:0080131 functional_description:"Sulfotransferase 5a (AHRD V1 **** C5H9P6_BRARP); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080131 NbS00010841g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.6|0.33|1|0.6|0.83|6|341|837; (*GB) gi|359496521|ref|XP_002262970.2| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Vitis vinifera];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc04g058110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54372770-54376223 transcript_region:SL2.40ch04:54372770..54376223+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00042118g0004.1 protein AED:0.35 eAED:0.35 QI:309|1|1|1|0.16|0.14|7|203|110; (*GB) gi|224092414|ref|XP_002309599.1| (e_value=3e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT2G25605.1 (e_value=6e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 75 Blast hits to 75 proteins in 20 species: Archae - 2; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr2:10899541-10900875 FORWARD LENGTH=200;; (*ITAG) Solyc08g067430.2.1 (e_value=1e-72) genomic_reference:SL2.40ch08 gene_region:53686130-53690841 transcript_region:SL2.40ch08:53686130..53690841+ functional_description:"cDNA clone 002-182-C01 full insert sequence (AHRD V1 *-*- B7F3P2_ORYSJ)"; NbS00001697g0005.1 protein AED:0.39 eAED:0.45 QI:28|0.33|0.5|1|1|1|4|102|91; (*GB) gi|388520659|gb|AFK48391.1| (e_value=2e-26) unknown [Medicago truncatula];; (*TAIR) AT5G66180.1 (e_value=2e-24) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:26448952-26450919 FORWARD LENGTH=395;; (*ITAG) Solyc03g033450.2.1 (e_value=9e-38) genomic_reference:SL2.40ch03 gene_region:9283975-9291763 transcript_region:SL2.40ch03:9283975..9291763+ functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- D4UN00_RUMAL); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; NbS00001697g0009.1 protein AED:0.45 eAED:0.72 QI:0|0|0|0.75|0|0|4|0|261; (*GB) gi|113205247|gb|AAT39965.2| (e_value=9e-16) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00009027g0004.1 protein AED:0.09 eAED:0.09 QI:55|0.6|0.66|1|0.6|0.5|6|192|437; (*GB) gi|350539035|ref|NP_001233859.1| (e_value=0.0) aromatic amino acid decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|P54772|DCHS_SOLLC (e_value=2e-176) Histidine decarboxylase OS=Solanum lycopersicum GN=HDC PE=2 SV=1;; (*TAIR) AT1G43710.1 (e_value=2e-151) | Symbols: emb1075 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:16486534-16488298 REVERSE LENGTH=482;; (*ITAG) Solyc08g006750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1322952-1326746 transcript_region:SL2.40ch08:1322952..1326746+ go_terms:GO:0030170,GO:0019752 functional_description:"Decarboxylase family protein (AHRD V1 ***- B1ILJ6_CLOBK); contains Interpro domain(s) IPR002129 Pyridoxal phosphate-dependent decarboxylase "; GO:0030170,GO:0019752 NbS00007537g0001.1 protein AED:0.26 eAED:0.27 QI:0|0.5|0.4|0.8|1|1|5|0|241; (*GB) gi|75172033|sp|Q9FPN0.1|NEC1_PETHY (e_value=3e-86) RecName: Full=Bidirectional sugar transporter NEC1; AltName: Full=NEC1;; (*SWP) sp|Q9FPN0|NEC1_PETHY (e_value=9e-88) Bidirectional sugar transporter NEC1 OS=Petunia hybrida GN=NEC1 PE=2 SV=1;; (*TAIR) AT2G39060.1 (e_value=2e-47) | Symbols: SWEET9, AtSWEET9 | Nodulin MtN3 family protein | chr2:16306818-16308206 REVERSE LENGTH=258;; (*ITAG) Solyc03g097560.2.1 (e_value=8e-49) genomic_reference:SL2.40ch03 gene_region:53339881-53341894 transcript_region:SL2.40ch03:53339881..53341894- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- B4FBY7_MAIZE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00007537g0005.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|89; (*ITAG) Solyc00g316530.1.1 (e_value=1e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:21609206-21609442 transcript_region:SL2.40ch00:21609206..21609442+ go_terms:GO:0005524 functional_description:"Unknown Protein (AHRD V1)"; GO:0005524 NbS00007537g0110.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.75|0.33|0.25|4|0|273 NbS00007537g0111.1 protein AED:0.42 eAED:0.42 QI:0|1|0|1|0|0|2|0|70 NbS00007537g0112.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|170 NbS00007537g0213.1 protein AED:0.03 eAED:0.03 QI:111|1|1|1|0.7|0.81|11|397|812 NbS00007537g0212.1 protein AED:0.05 eAED:0.05 QI:33|1|1|1|0.66|0.75|4|281|548 NbS00023150g0003.1 protein AED:0.29 eAED:0.29 QI:0|1|0.75|1|1|1|4|46|315; (*GB) gi|29290586|gb|AAO69665.1| (e_value=0.0) serine threonine protein phosphatase [Phaseolus acutifolius];; (*SWP) sp|Q9M9W3|PP19_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1;; (*TAIR) AT3G05580.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:1618216-1619850 REVERSE LENGTH=318;; (*ITAG) Solyc01g099860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81754501-81757239 transcript_region:SL2.40ch01:81754501..81757239- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q84T16_PHAAT); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00016014g0010.1 protein AED:0.09 eAED:0.13 QI:0|0|0|0.5|0.66|0.5|4|0|1389; (*GB) gi|225437318|ref|XP_002267274.1| (e_value=0.0) PREDICTED: translocase of chloroplast 159, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O81283|TC159_ARATH (e_value=0.0) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=0.0) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc01g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72526370-72529831 transcript_region:SL2.40ch01:72526370..72529831+ go_terms:GO:0004888 functional_description:"Translocase of chloroplast 34 (AHRD V1 *-*- B6TBT7_MAIZE); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0004888 NbS00016014g0006.1 protein AED:0.36 eAED:0.46 QI:0|0.33|0.25|1|1|1|4|0|183; (*GB) gi|225425286|ref|XP_002272015.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100264392 isoform 1 [Vitis vinifera];; (*ITAG) Solyc09g009850.2.1 (e_value=6e-60) genomic_reference:SL2.40ch09 gene_region:3342999-3344898 transcript_region:SL2.40ch09:3342999..3344898+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 ***- Q9FLF2_ARATH)"; NbS00007391g0001.1 protein AED:0.00 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|111 NbS00002060g0015.1 protein AED:0.25 eAED:0.27 QI:0|0|0|1|0|0.25|4|0|407; (*GB) gi|255583974|ref|XP_002532733.1| (e_value=0.0) Glycosyltransferase QUASIMODO1, putative [Ricinus communis];; (*SWP) sp|Q9LSG3|GAUT8_ARATH (e_value=0.0) Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1;; (*TAIR) AT3G25140.1 (e_value=0.0) | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559;; (*ITAG) Solyc06g083310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45059759-45063492 transcript_region:SL2.40ch06:45059759..45063492- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00002060g0006.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|121; (*ITAG) Solyc06g083330.2.1 (e_value=7e-23) genomic_reference:SL2.40ch06 gene_region:45066449-45067576 transcript_region:SL2.40ch06:45066449..45067576- functional_description:"Genomic DNA chromosome 3 P1 clone MJL12 (AHRD V1 ***- Q9LSG4_ARATH)"; NbS00002060g0014.1 protein AED:0.29 eAED:0.29 QI:174|1|1|1|1|1|3|537|327; (*GB) gi|15705932|gb|AAL05884.1|AF411856_1 (e_value=3e-92) transcriptional activator FHA1 [Nicotiana tabacum];; (*SWP) sp|O14270|FHL1_SCHPO (e_value=9e-15) Fork head transcription factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fhl1 PE=2 SV=2;; (*TAIR) AT3G07260.1 (e_value=9e-75) | Symbols: | SMAD/FHA domain-containing protein | chr3:2309704-2310630 FORWARD LENGTH=251;; (*ITAG) Solyc09g059500.2.1 (e_value=3e-82) genomic_reference:SL2.40ch09 gene_region:50169017-50179394 transcript_region:SL2.40ch09:50169017..50179394+ go_terms:GO:0016563 functional_description:"Forkhead box K1 (AHRD V1 *--- C1K2Z9_ORYLA); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0016563 NbS00002060g0018.1 protein AED:0.26 eAED:0.28 QI:356|0.63|0.41|1|0.81|0.75|12|0|480; (*GB) gi|359495838|ref|XP_002273770.2| (e_value=8e-98) PREDICTED: uncharacterized protein LOC100264206 [Vitis vinifera];; (*SWP) sp|O94260|G3BP_SCHPO (e_value=2e-17) Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1;; (*TAIR) AT3G25150.2 (e_value=1e-69) | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9160052 REVERSE LENGTH=587;; (*ITAG) Solyc06g083300.2.1 (e_value=4e-168) genomic_reference:SL2.40ch06 gene_region:45055025-45059449 transcript_region:SL2.40ch06:45055025..45059449+ go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00002060g0016.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.33|1|1|1|3|0|523; (*GB) gi|225467717|ref|XP_002262639.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259020 [Vitis vinifera];; (*TAIR) AT3G07210.1 (e_value=5e-170) | Symbols: | unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | chr3:2293000-2295119 REVERSE LENGTH=547;; (*ITAG) Solyc06g083370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45080571-45084790 transcript_region:SL2.40ch06:45080571..45084790+ go_terms:GO:0003824 functional_description:"Os01g0917200 protein (Fragment) (AHRD V1 ***- Q0JGL5_ORYSJ); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbS00002060g0017.1 protein AED:0.32 eAED:0.32 QI:153|1|1|1|1|1|4|393|71; (*GB) gi|224069248|ref|XP_002326311.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39290|RPAB5_BRANA (e_value=1e-43) DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1;; (*TAIR) AT1G11475.1 (e_value=2e-44) | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases N / 8 kDa subunit | chr1:3862520-3863805 FORWARD LENGTH=71;; (*ITAG) Solyc06g083360.2.1 (e_value=4e-48) genomic_reference:SL2.40ch06 gene_region:45077113-45079295 transcript_region:SL2.40ch06:45077113..45079295+ go_terms:GO:0005515 functional_description:"DNA-directed RNA Polymerase II subunit L (AHRD V1 ***- A3GGI8_PICST); contains Interpro domain(s) IPR000268 RNA polymerases, N/8 kDa subunit "; GO:0005515 NbC26068038g0004.1 protein AED:0.12 eAED:0.19 QI:0|0|0|1|0.5|0.4|5|0|203; (*GB) gi|365927742|gb|AEX07772.1| (e_value=2e-96) cytochrome P450 [Catharanthus roseus];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=6e-62) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=8e-74) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc05g021390.2.1 (e_value=2e-98) genomic_reference:SL2.40ch05 gene_region:27157336-27159140 transcript_region:SL2.40ch05:27157336..27159140+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00002990g0008.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|325; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=4e-103) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|Q8GX86|PME21_ARATH (e_value=6e-43) Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2;; (*TAIR) AT3G05610.1 (e_value=4e-44) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr3:1625876-1627976 REVERSE LENGTH=669;; (*ITAG) Solyc01g057220.2.1 (e_value=1e-149) genomic_reference:SL2.40ch01 gene_region:52745152-52747295 transcript_region:SL2.40ch01:52745152..52747295+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9S005_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00002990g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|387; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=7e-121) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|Q9SMY6|PME45_ARATH (e_value=1e-90) Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1;; (*TAIR) AT4G33230.1 (e_value=7e-92) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:16026591-16028754 REVERSE LENGTH=609;; (*ITAG) Solyc01g057220.2.1 (e_value=6e-145) genomic_reference:SL2.40ch01 gene_region:52745152-52747295 transcript_region:SL2.40ch01:52745152..52747295+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9S005_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008158g0034.1 protein AED:0.08 eAED:0.09 QI:0|0.75|0.4|1|1|1|5|171|1010; (*GB) gi|224142043|ref|XP_002324368.1| (e_value=0.0) glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa];; (*SWP) sp|Q8LGN0|GLR27_ARATH (e_value=0.0) Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3;; (*TAIR) AT2G29120.1 (e_value=0.0) | Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952;; (*ITAG) Solyc08g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00008158g0033.1 protein AED:0.16 eAED:0.16 QI:303|1|0.85|1|1|1|7|0|774; (*GB) gi|225443280|ref|XP_002273667.1| (e_value=0.0) PREDICTED: exocyst complex component 8 [Vitis vinifera];; (*SWP) sp|Q54VZ8|EXOC8_DICDI (e_value=9e-17) Exocyst complex component 8 OS=Dictyostelium discoideum GN=exoc8 PE=3 SV=2;; (*TAIR) AT5G49830.1 (e_value=0.0) | Symbols: EXO84B | exocyst complex component 84B | chr5:20250803-20254766 REVERSE LENGTH=752;; (*ITAG) Solyc03g123870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64609111-64617320 transcript_region:SL2.40ch03:64609111..64617320- functional_description:"Exocyst complex component 8 (AHRD V1 *-*- B5X3R0_SALSA); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00008158g0040.1 protein AED:0.28 eAED:0.29 QI:322|0.76|0.87|0.93|0.7|0.80|31|0|964; (*GB) gi|359483154|ref|XP_002275074.2| (e_value=0.0) PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LU41|ACA9_ARATH (e_value=0.0) Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2;; (*TAIR) AT3G21180.1 (e_value=0.0) | Symbols: ACA9, ATACA9 | autoinhibited Ca(2+)-ATPase 9 | chr3:7425770-7431941 FORWARD LENGTH=1086;; (*ITAG) Solyc03g123890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64626300-64643322 transcript_region:SL2.40ch03:64626300..64643322- go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00008158g0035.1 protein AED:0.05 eAED:0.05 QI:0|0.8|0.5|1|0.8|0.66|6|0|378; (*GB) gi|255574761|ref|XP_002528288.1| (e_value=2e-178) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G21190.1 (e_value=5e-167) | Symbols: | O-fucosyltransferase family protein | chr3:7432579-7434543 REVERSE LENGTH=422;; (*ITAG) Solyc06g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36331992-36336504 transcript_region:SL2.40ch06:36331992..36336504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00008158g0036.1 protein AED:0.20 eAED:0.20 QI:211|1|1|1|1|1|5|418|317; (*GB) gi|316936734|gb|ADU60361.1| (e_value=0.0) glutamyl-tRNA reductase binding protein [Nicotiana tabacum];; (*TAIR) AT3G21200.1 (e_value=3e-123) | Symbols: PGR7 | proton gradient regulation 7 | chr3:7436091-7437845 FORWARD LENGTH=317;; (*ITAG) Solyc03g123880.2.1 (e_value=1e-159) genomic_reference:SL2.40ch03 gene_region:64623069-64625746 transcript_region:SL2.40ch03:64623069..64625746+ functional_description:"Pyridoxamine 5&apos-phosphate oxidase-related FMN-binding (AHRD V1 **-- Q01TW9_SOLUE); contains Interpro domain(s) IPR009002 FMN-binding split barrel, related "; NbS00008158g0007.1 protein AED:0.26 eAED:0.26 QI:2129|1|1|1|0.5|0.4|5|330|85 NbS00008158g0047.1 protein AED:0.30 eAED:0.30 QI:0|0.25|0.2|1|0|0.4|5|40|513; (*GB) gi|46396756|sp|P93194.2|RPK1_IPONI (e_value=0.0) RecName: Full=Receptor-like protein kinase; Flags: Precursor;; (*SWP) sp|P93194|RPK1_IPONI (e_value=0.0) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G73080.1 (e_value=3e-132) | Symbols: PEPR1, ATPEPR1 | PEP1 receptor 1 | chr1:27484513-27488021 FORWARD LENGTH=1123;; (*ITAG) Solyc03g123860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64604414-64608013 transcript_region:SL2.40ch03:64604414..64608013+ go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00008158g0048.1 protein AED:0.27 eAED:0.31 QI:182|0.87|0.77|1|0.62|0.66|9|0|300; (*GB) gi|298204782|emb|CBI25280.3| (e_value=4e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6ZRY4|RBPS2_HUMAN (e_value=3e-15) RNA-binding protein with multiple splicing 2 OS=Homo sapiens GN=RBPMS2 PE=2 SV=1;; (*TAIR) AT3G21215.1 (e_value=2e-97) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7442873-7445231 REVERSE LENGTH=339;; (*ITAG) Solyc03g123840.2.1 (e_value=6e-112) genomic_reference:SL2.40ch03 gene_region:64597421-64602015 transcript_region:SL2.40ch03:64597421..64602015+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein with multiple splicing 2 (Fragment) (AHRD V1 *--- A5YBM9_HORSE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00008158g0012.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|46396756|sp|P93194.2|RPK1_IPONI (e_value=3e-58) RecName: Full=Receptor-like protein kinase; Flags: Precursor;; (*SWP) sp|P93194|RPK1_IPONI (e_value=1e-59) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G73066.1 (e_value=3e-46) | Symbols: | Leucine-rich repeat family protein | chr1:27481785-27483581 FORWARD LENGTH=598;; (*ITAG) Solyc03g123860.2.1 (e_value=3e-71) genomic_reference:SL2.40ch03 gene_region:64604414-64608013 transcript_region:SL2.40ch03:64604414..64608013+ go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00008158g0011.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|46396756|sp|P93194.2|RPK1_IPONI (e_value=2e-49) RecName: Full=Receptor-like protein kinase; Flags: Precursor;; (*SWP) sp|P93194|RPK1_IPONI (e_value=7e-51) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G73066.1 (e_value=1e-38) | Symbols: | Leucine-rich repeat family protein | chr1:27481785-27483581 FORWARD LENGTH=598;; (*ITAG) Solyc03g123860.2.1 (e_value=2e-65) genomic_reference:SL2.40ch03 gene_region:64604414-64608013 transcript_region:SL2.40ch03:64604414..64608013+ go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00008232g0008.1 protein AED:0.05 eAED:0.09 QI:72|0.85|0.86|1|0.71|0.86|15|519|570; (*GB) gi|359483518|ref|XP_002272702.2| (e_value=0.0) PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera];; (*SWP) sp|Q5ZMW3|API5_CHICK (e_value=1e-60) Apoptosis inhibitor 5 OS=Gallus gallus GN=API5 PE=2 SV=1;; (*TAIR) AT2G34040.1 (e_value=0.0) | Symbols: | Apoptosis inhibitory protein 5 (API5) | chr2:14377957-14382246 REVERSE LENGTH=553;; (*ITAG) Solyc10g008800.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2870284-2880796 transcript_region:SL2.40ch10:2870284..2880796- go_terms:GO:0017134 functional_description:"Apoptosis inhibitor 5 (AHRD V1 ***- Q3U517_MOUSE); contains Interpro domain(s) IPR008383 Apoptosis inhibitory 5 "; GO:0017134 NbS00022600g0009.1 protein AED:0.04 eAED:0.15 QI:12|0|0.5|1|0|0.5|2|562|40 NbS00022600g0011.1 protein AED:0.22 eAED:0.23 QI:21|0.87|0.76|1|0.75|0.88|17|0|867; (*GB) gi|255577246|ref|XP_002529505.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C0X8|RRP12_SCHPO (e_value=2e-31) Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB8E5.07c PE=2 SV=1;; (*TAIR) AT4G23540.1 (e_value=3e-169) | Symbols: | ARM repeat superfamily protein | chr4:12280547-12286420 REVERSE LENGTH=1131;; (*ITAG) Solyc04g015940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6462961-6486905 transcript_region:SL2.40ch04:6462961..6486905+ go_terms:GO:0005488 functional_description:"Ribosomal RNA-processing protein (AHRD V1 *--- C1GNI2_PARBA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00022600g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.72|0.6|0.96|0.72|0.76|30|0|1453; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=0.0) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=0.0) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=0.0) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00022600g0016.1 protein AED:0.26 eAED:0.44 QI:0|0.5|0|0.66|1|1|3|0|351; (*GB) gi|356503440|ref|XP_003520516.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g41720-like [Glycine max];; (*SWP) sp|Q8RWS8|PP199_ARATH (e_value=5e-173) Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1;; (*TAIR) AT2G41720.2 (e_value=3e-176) | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:17403861-17406648 REVERSE LENGTH=683;; (*ITAG) Solyc04g015950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:6487752-6499059 transcript_region:SL2.40ch04:6487752..6499059+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00022600g0013.1 protein AED:0.58 eAED:0.58 QI:0|0.4|0.16|0.66|0.8|0.66|6|0|290; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=4e-114) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=2e-100) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=2e-101) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=1e-139) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00050852g0003.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|0|0|3|0|489; (*GB) gi|356530205|ref|XP_003533674.1| (e_value=7e-129) PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like [Glycine max];; (*SWP) sp|Q8L6Y7|PP193_ARATH (e_value=2e-91) Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana GN=At2g38420 PE=2 SV=2;; (*TAIR) AT2G38420.1 (e_value=2e-92) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16091093-16092454 FORWARD LENGTH=453;; (*ITAG) Solyc09g014930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7176397-7177887 transcript_region:SL2.40ch09:7176397..7177887+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LLK1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00051536g0006.1 protein AED:0.29 eAED:0.31 QI:252|0.71|0.62|1|0.85|0.87|8|0|970; (*GB) gi|225458772|ref|XP_002285122.1| (e_value=0.0) PREDICTED: metal transporter Nramp2-like [Vitis vinifera];; (*SWP) sp|Q9C6B2|NRAM2_ARATH (e_value=0.0) Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1;; (*TAIR) AT1G47240.1 (e_value=0.0) | Symbols: NRAMP2, ATNRAMP2 | NRAMP metal ion transporter 2 | chr1:17309043-17311308 REVERSE LENGTH=530;; (*ITAG) Solyc04g078250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60616806-60621171 transcript_region:SL2.40ch04:60616806..60621171- go_terms:GO:0005384 functional_description:"Manganese transport protein mntH (AHRD V1 **-* MNTH_LACBR); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00055136g0003.1 protein AED:0.00 eAED:0.00 QI:126|1|1|1|1|1|2|216|362; (*GB) gi|255585701|ref|XP_002533534.1| (e_value=4e-155) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q9SZ83|Y4967_ARATH (e_value=8e-129) Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1;; (*TAIR) AT4G09670.1 (e_value=6e-130) | Symbols: | Oxidoreductase family protein | chr4:6107382-6109049 REVERSE LENGTH=362;; (*ITAG) Solyc11g011840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4798845-4801208 transcript_region:SL2.40ch11:4798845..4801208+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7LXC3_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491,GO:0055114 NbS00013004g0003.1 protein AED:0.01 eAED:0.01 QI:277|1|1|1|0.66|0.75|4|254|668; (*GB) gi|297739886|emb|CBI30068.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P54453|YQEH_BACSU (e_value=7e-32) Uncharacterized protein yqeH OS=Bacillus subtilis (strain 168) GN=yqeH PE=1 SV=1;; (*TAIR) AT3G57180.1 (e_value=0.0) | Symbols: BPG2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21163663-21166006 REVERSE LENGTH=660;; (*ITAG) Solyc04g009300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2738951-2744093 transcript_region:SL2.40ch04:2738951..2744093- go_terms:GO:0005622 functional_description:"GTP-binding protein YqeH (AHRD V1 *--- D3FXI6_BACPE); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0005622 NbS00005355g0006.1 protein AED:0.16 eAED:0.16 QI:275|1|1|1|1|1|2|280|250; (*GB) gi|68500726|gb|AAY98032.1| (e_value=3e-12) ASR4 [Solanum lycopersicum];; (*ITAG) Solyc04g071620.2.1 (e_value=6e-15) genomic_reference:SL2.40ch04 gene_region:56178656-56180338 transcript_region:SL2.40ch04:56178656..56180338+ go_terms:GO:0006950 functional_description:"ASR4 (Fragment) (AHRD V1 *-*- Q2QJU1_SOLLC); contains Interpro domain(s) IPR003496 ABA/WDS induced protein "; GO:0006950 NbS00005355g0117.1 protein AED:0.08 eAED:0.08 QI:0|1|1|1|0|0.5|2|0|112 NbS00005355g0116.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.75|1|0.66|0.75|4|244|170 NbS00013812g0011.1 protein AED:0.23 eAED:0.23 QI:100|1|1|1|0.90|0.91|12|335|450; (*GB) gi|224089058|ref|XP_002308618.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P46644|AAT3_ARATH (e_value=0.0) Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1;; (*TAIR) AT5G11520.1 (e_value=0.0) | Symbols: ASP3, YLS4 | aspartate aminotransferase 3 | chr5:3685257-3687721 REVERSE LENGTH=449;; (*ITAG) Solyc08g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54637277-54645402 transcript_region:SL2.40ch08:54637277..54645402- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** B9H920_POPTR); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00013812g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.77|0.7|0.9|0.77|0.7|10|200|1054; (*GB) gi|16326135|dbj|BAB70511.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=7e-152) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT4G32730.2 (e_value=8e-178) | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | Homeodomain-like protein | chr4:15791039-15795643 FORWARD LENGTH=995;; (*ITAG) Solyc08g068320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54627590-54635874 transcript_region:SL2.40ch08:54627590..54635874+ go_terms:GO:0003713,GO:0003700 functional_description:"Transcription factor myb (AHRD V1 *-** Q5QT32_ORYSA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003713,GO:0003700 NbS00006151g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.90|1|0.8|0.90|11|406|623; (*GB) gi|255571754|ref|XP_002526820.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q4V893|K1704_RAT (e_value=2e-11) Uncharacterized protein KIAA1704 homolog OS=Rattus norvegicus PE=2 SV=1;; (*TAIR) AT1G65280.1 (e_value=2e-180) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:24245501-24248521 FORWARD LENGTH=588;; (*ITAG) Solyc11g018670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8891248-8908148 transcript_region:SL2.40ch11:8891248..8908148- go_terms:GO:0031072 functional_description:"DnaJ-like protein (AHRD V1 *-*- A8HMH6_CHLRE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00006151g0107.1 protein AED:0.01 eAED:0.01 QI:155|1|0.66|1|0.5|0.33|3|269|669 NbS00004890g0011.1 protein AED:0.18 eAED:0.18 QI:147|1|1|1|0.16|0.14|7|370|185; (*GB) gi|224113703|ref|XP_002316547.1| (e_value=2e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZS51|PMP22_ARATH (e_value=7e-57) Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1;; (*TAIR) AT4G14305.1 (e_value=5e-61) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:8235335-8236605 REVERSE LENGTH=185;; (*ITAG) Solyc03g031600.2.1 (e_value=4e-92) genomic_reference:SL2.40ch03 gene_region:8366728-8371789 transcript_region:SL2.40ch03:8366728..8371789- go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein PMP22 (AHRD V1 ***- B6TFH7_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00004890g0015.1 protein AED:0.50 eAED:0.50 QI:210|0|0.33|0.66|0.5|0.66|3|0|131; (*GB) gi|297735477|emb|CBI17917.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G26000.1 (e_value=5e-15) | Symbols: PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH=495;; (*ITAG) Solyc07g008490.2.1 (e_value=5e-19) genomic_reference:SL2.40ch07 gene_region:3392921-3399097 transcript_region:SL2.40ch07:3392921..3399097- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6TJ76_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00004890g0013.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-39) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=2e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00054790g0002.1 protein AED:0.23 eAED:0.28 QI:0|0.2|0|1|0.2|0.5|6|0|243; (*GB) gi|221222546|gb|ABZ89191.1| (e_value=4e-55) putative protein [Coffea canephora];; (*SWP) sp|Q7XU38|C87A3_ORYSJ (e_value=4e-27) Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3;; (*TAIR) AT1G12740.2 (e_value=4e-24) | Symbols: CYP87A2 | cytochrome P450, family 87, subfamily A, polypeptide 2 | chr1:4342462-4344569 FORWARD LENGTH=478;; (*ITAG) Solyc04g009930.1.1 (e_value=7e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:3248530-3253636 transcript_region:SL2.40ch04:3248530..3253636+ go_terms:GO:0020037,GO:0006810,GO:0055114 functional_description:"Cytochrome P450"; GO:0020037,GO:0006810,GO:0055114 NbS00009861g0003.1 protein AED:0.21 eAED:0.22 QI:135|1|0.85|1|0.66|0.57|7|0|253; (*GB) gi|225457803|ref|XP_002265836.1| (e_value=8e-84) PREDICTED: bidirectional sugar transporter SWEET1 [Vitis vinifera];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=1e-82) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=1e-83) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc06g060590.2.1 (e_value=5e-123) genomic_reference:SL2.40ch06 gene_region:34970975-34975215 transcript_region:SL2.40ch06:34970975..34975215- go_terms:GO:0016021 functional_description:"Nodulin MtN3 family protein (AHRD V1 **-- D7KK13_ARALY); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00038138g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|584; (*GB) gi|225461363|ref|XP_002281949.1| (e_value=0.0) PREDICTED: ABC transporter G family member 9-like [Vitis vinifera];; (*SWP) sp|Q9SZR9|AB9G_ARATH (e_value=0.0) ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=2;; (*TAIR) AT4G27420.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr4:13712434-13714797 REVERSE LENGTH=638;; (*ITAG) Solyc07g063400.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63093862-63097057 transcript_region:SL2.40ch07:63093862..63097057+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 9 (AHRD V1 ***- AB9G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00023390g0009.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|328; (*GB) gi|388499148|gb|AFK37640.1| (e_value=3e-116) unknown [Lotus japonicus];; (*SWP) sp|Q84MB3|ACCH1_ARATH (e_value=2e-51) 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1;; (*TAIR) AT3G13610.1 (e_value=3e-110) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:4449448-4450616 FORWARD LENGTH=361;; (*ITAG) Solyc11g072110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52455435-52457149 transcript_region:SL2.40ch11:52455435..52457149- go_terms:GO:0016491 functional_description:"1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE-like protein (AHRD V1 **-- Q94CL5_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00031161g0003.1 protein AED:0.27 eAED:0.28 QI:225|0.88|0.8|1|0.66|0.6|10|0|444; (*GB) gi|359492489|ref|XP_002285867.2| (e_value=7e-168) PREDICTED: aspartic proteinase Asp1-like [Vitis vinifera];; (*SWP) sp|Q0IU52|ASP1_ORYSJ (e_value=2e-95) Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1;; (*TAIR) AT1G44130.1 (e_value=3e-151) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:16787508-16789318 REVERSE LENGTH=405;; (*ITAG) Solyc06g009110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3053791-3057937 transcript_region:SL2.40ch06:3053791..3057937- go_terms:GO:0006508 functional_description:"Nucellin-like aspartic protease (Fragment) (AHRD V1 **-- Q8L886_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00055844g0002.1 protein AED:0.11 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|450; (*GB) gi|225456224|ref|XP_002279168.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Vitis vinifera];; (*SWP) sp|Q1PFC5|PP130_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1;; (*TAIR) AT1G77405.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29087145-29088521 FORWARD LENGTH=458;; (*ITAG) Solyc08g029150.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:22827081-22828361 transcript_region:SL2.40ch08:22827081..22828361+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010615g0005.1 protein AED:0.04 eAED:0.04 QI:209|1|0.5|1|1|1|2|0|964; (*GB) gi|224075393|ref|XP_002304615.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65440|BAME3_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3;; (*TAIR) AT4G20270.1 (e_value=0.0) | Symbols: BAM3 | Leucine-rich receptor-like protein kinase family protein | chr4:10949822-10952924 FORWARD LENGTH=992;; (*ITAG) Solyc01g080770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72507024-72510368 transcript_region:SL2.40ch01:72507024..72510368- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00017202g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|377; (*GB) gi|225462703|ref|XP_002267400.1| (e_value=3e-93) PREDICTED: ethylene-responsive transcription factor CRF4 [Vitis vinifera];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=3e-59) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=2e-60) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc06g051840.1.1 (e_value=4e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:32043471-32044523 transcript_region:SL2.40ch06:32043471..32044523+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00024961g0006.1 protein AED:0.22 eAED:0.22 QI:859|0.75|0.8|1|0|0.2|5|0|110; (*GB) gi|350537175|ref|NP_001233772.1| (e_value=2e-42) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=1e-36) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT2G32010.2 (e_value=3e-38) | Symbols: CVL1 | CVP2 like 1 | chr2:13625344-13628081 FORWARD LENGTH=594;; (*ITAG) Solyc06g054010.2.1 (e_value=3e-45) genomic_reference:SL2.40ch06 gene_region:33366025-33371121 transcript_region:SL2.40ch06:33366025..33371121+ go_terms:GO:0046030 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase (AHRD V1 **** Q712G2_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0046030 NbS00027405g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0.5|1|0|0.5|2|308|93; (*GB) gi|255553611|ref|XP_002517846.1| (e_value=1e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G44170.1 (e_value=6e-41) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:17780394-17781098 FORWARD LENGTH=234;; (*ITAG) Solyc07g053580.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59328975-59329649 transcript_region:SL2.40ch07:59328975..59329649+ go_terms:GO:0008757 functional_description:"FAM119A (AHRD V1 **-- B9EP45_SALSA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; GO:0008757 NbS00027405g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|112; (*GB) gi|225446467|ref|XP_002277665.1| (e_value=3e-55) PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera];; (*TAIR) AT5G44170.1 (e_value=5e-51) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:17780394-17781098 FORWARD LENGTH=234;; (*ITAG) Solyc07g053580.1.1 (e_value=3e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59328975-59329649 transcript_region:SL2.40ch07:59328975..59329649+ go_terms:GO:0008757 functional_description:"FAM119A (AHRD V1 **-- B9EP45_SALSA); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; GO:0008757 NbS00030960g0020.1 protein AED:0.15 eAED:0.15 QI:57|1|0|1|0|0|2|0|47; (*ITAG) Solyc02g082460.2.1 (e_value=4e-15) genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00030960g0023.1 protein AED:0.17 eAED:0.17 QI:209|0.83|0.84|1|0.75|0.84|13|0|569; (*GB) gi|225438438|ref|XP_002276939.1| (e_value=0.0) PREDICTED: exosome complex exonuclease RRP44 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9CSH3|RRP44_MOUSE (e_value=1e-156) Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4;; (*TAIR) AT2G17510.1 (e_value=0.0) | Symbols: EMB2763 | ribonuclease II family protein | chr2:7609395-7615881 REVERSE LENGTH=933;; (*ITAG) Solyc02g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00030960g0021.1 protein AED:0.24 eAED:0.24 QI:7|1|0.87|1|0.85|1|8|328|278; (*GB) gi|225438438|ref|XP_002276939.1| (e_value=4e-173) PREDICTED: exosome complex exonuclease RRP44 isoform 2 [Vitis vinifera];; (*SWP) sp|Q17632|RRP44_CAEEL (e_value=4e-75) Probable exosome complex exonuclease RRP44 OS=Caenorhabditis elegans GN=dis-3 PE=2 SV=2;; (*TAIR) AT2G17510.2 (e_value=2e-169) | Symbols: EMB2763 | ribonuclease II family protein | chr2:7609395-7616242 REVERSE LENGTH=1012;; (*ITAG) Solyc02g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40730303-40748885 transcript_region:SL2.40ch02:40730303..40748885- go_terms:GO:0000175 functional_description:"Exoribonuclease 2 (AHRD V1 *--* RNB_VIBSL); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0000175 NbS00030960g0025.1 protein AED:0.26 eAED:0.26 QI:369|0.88|0.9|1|0.77|0.7|10|12|359; (*GB) gi|224081467|ref|XP_002306421.1| (e_value=7e-161) predicted protein [Populus trichocarpa];; (*TAIR) AT5G65980.1 (e_value=1e-143) | Symbols: | Auxin efflux carrier family protein | chr5:26392444-26394232 FORWARD LENGTH=395;; (*ITAG) Solyc02g082450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40726154-40728736 transcript_region:SL2.40ch02:40726154..40728736+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7L9F0_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00013311g0008.1 protein AED:0.41 eAED:0.41 QI:206|0.71|0.62|0.87|0.28|0.25|8|0|229; (*GB) gi|224115458|ref|XP_002317039.1| (e_value=5e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT2G45530.1 (e_value=7e-59) | Symbols: | RING/U-box superfamily protein | chr2:18756604-18757326 FORWARD LENGTH=240;; (*ITAG) Solyc08g013710.2.1 (e_value=8e-114) genomic_reference:SL2.40ch08 gene_region:3075879-3082648 transcript_region:SL2.40ch08:3075879..3082648- go_terms:GO:0008270 functional_description:"Zinc finger protein (AHRD V1 *--- B6UCK2_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00013311g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|327|379; (*GB) gi|225426506|ref|XP_002271695.1| (e_value=4e-94) PREDICTED: B3 domain-containing protein Os03g0120900-like [Vitis vinifera];; (*SWP) sp|Q6EU30|Y2835_ORYSJ (e_value=8e-69) B3 domain-containing protein Os02g0683500 OS=Oryza sativa subsp. japonica GN=Os02g0683500 PE=2 SV=1;; (*TAIR) AT2G46870.1 (e_value=1e-68) | Symbols: NGA1 | AP2/B3-like transcriptional factor family protein | chr2:19261313-19262245 FORWARD LENGTH=310;; (*ITAG) Solyc08g013690.1.1 (e_value=4e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3060068-3061042 transcript_region:SL2.40ch08:3060068..3061042+ go_terms:GO:0003700 functional_description:"Auxin response factor 24 (AHRD V1 *-** D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003700 NbS00032684g0004.1 protein AED:0.04 eAED:0.04 QI:311|1|1|1|1|1|5|391|217; (*GB) gi|359497145|ref|XP_002264869.2| (e_value=2e-62) PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8W463|RK191_ARATH (e_value=1e-59) 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1;; (*TAIR) AT4G17560.1 (e_value=9e-61) | Symbols: | Ribosomal protein L19 family protein | chr4:9780343-9781752 FORWARD LENGTH=225;; (*ITAG) Solyc08g078010.2.1 (e_value=3e-86) genomic_reference:SL2.40ch08 gene_region:59052085-59055703 transcript_region:SL2.40ch08:59052085..59055703- go_terms:GO:0005840 functional_description:"50S ribosomal protein L19 (AHRD V1 *-*- B6T8M1_MAIZE); contains Interpro domain(s) IPR001857 Ribosomal protein L19 "; GO:0005840 NbS00010182g0008.1 protein AED:0.16 eAED:0.16 QI:215|1|1|1|0.85|0.85|21|376|476; (*GB) gi|21599|emb|CAA79357.1| (e_value=0.0) UTP--glucose-1-phosphate uridylyltransferase [Solanum tuberosum];; (*SWP) sp|P19595|UGPA_SOLTU (e_value=0.0) UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3;; (*TAIR) AT5G17310.2 (e_value=0.0) | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 | chr5:5696955-5700845 REVERSE LENGTH=470;; (*ITAG) Solyc05g054060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63182024-63189388 transcript_region:SL2.40ch05:63182024..63189388- go_terms:GO:0003983,GO:0042802 functional_description:"UTP-glucose 1 phosphate uridylyltransferase (AHRD V1 **** B3VDY8_EUCGR); contains Interpro domain(s) IPR016267 UTP--glucose-1-phosphate uridylyltransferase, subgroup "; GO:0003983,GO:0042802 NbS00010182g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.28|0.85|0.83|0.71|7|0|468; (*GB) gi|3252854|gb|AAC39483.1| (e_value=0.0) glutamate decarboxylase isozyme 2 [Nicotiana tabacum];; (*SWP) sp|Q07346|DCE_PETHY (e_value=0.0) Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1;; (*TAIR) AT5G17330.1 (e_value=0.0) | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502;; (*ITAG) Solyc05g054050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63173933-63177785 transcript_region:SL2.40ch05:63173933..63177785- go_terms:GO:0004351,GO:0005516 functional_description:"Glutamate decarboxylase (AHRD V1 **** Q8LKR4_TOBAC); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0004351,GO:0005516 NbS00023238g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|30016902|gb|AAP04001.1| (e_value=2e-48) EIL5 [Nicotiana tabacum];; (*ITAG) Solyc01g096810.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:79563681-79566235 transcript_region:SL2.40ch01:79563681..79566235- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00023238g0012.1 protein AED:0.09 eAED:0.09 QI:350|0.85|0.75|1|0.85|0.87|8|128|489; (*GB) gi|4741991|gb|AAD28791.1|AF145593_1 (e_value=0.0) calcium/calmodulin-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|A0AAR7|CCAMK_LOTJA (e_value=0.0) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase OS=Lotus japonicus GN=CCAMK PE=1 SV=1;; (*TAIR) AT5G12180.1 (e_value=1e-74) | Symbols: CPK17 | calcium-dependent protein kinase 17 | chr5:3937136-3939323 FORWARD LENGTH=528;; (*ITAG) Solyc01g096820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79577959-79582114 transcript_region:SL2.40ch01:79577959..79582114+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 ***- Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00023238g0013.1 protein AED:0.29 eAED:0.31 QI:164|0.5|0.66|1|0.25|0.44|9|0|349; (*GB) gi|225437370|ref|XP_002269158.1| (e_value=3e-162) PREDICTED: peter Pan-like protein [Vitis vinifera];; (*SWP) sp|Q9ASU7|PPAN_ARATH (e_value=8e-156) Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1;; (*TAIR) AT5G61770.3 (e_value=4e-157) | Symbols: PPAN | PETER PAN-like protein | chr5:24815888-24817495 FORWARD LENGTH=346;; (*ITAG) Solyc01g096800.2.1 (e_value=4e-170) genomic_reference:SL2.40ch01 gene_region:79556843-79561394 transcript_region:SL2.40ch01:79556843..79561394+ go_terms:GO:0005515,GO:0019843 functional_description:"SWI4 1 Peter Pan-like protein suppressor (AHRD V1 **-- D0MSA0_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; GO:0005515,GO:0019843 NbS00023238g0014.1 protein AED:0.17 eAED:0.23 QI:0|0|0|1|0|0|2|0|618; (*GB) gi|351000269|gb|ADZ97022.2| (e_value=0.0) EIL6, partial [Nicotiana tabacum];; (*SWP) sp|O24606|EIN3_ARATH (e_value=1e-161) Protein ETHYLENE INSENSITIVE 3 OS=Arabidopsis thaliana GN=EIN3 PE=1 SV=1;; (*TAIR) AT3G20770.1 (e_value=1e-162) | Symbols: EIN3, AtEIN3 | Ethylene insensitive 3 family protein | chr3:7260702-7262588 REVERSE LENGTH=628;; (*ITAG) Solyc01g096810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79563681-79566235 transcript_region:SL2.40ch01:79563681..79566235- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene insensitive 3 class transcription factor (AHRD V1 **** D5L146_MALDO); contains Interpro domain(s) IPR006957 Ethylene insensitive 3 "; GO:0005515,GO:0003700 NbS00032040g0001.1 protein AED:0.18 eAED:0.21 QI:0|0|0|1|1|1|2|0|749; (*GB) gi|297734231|emb|CBI15478.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C744|AP3D_ARATH (e_value=1e-141) AP-3 complex subunit delta OS=Arabidopsis thaliana GN=DELTA-ADR PE=1 SV=1;; (*TAIR) AT1G48760.3 (e_value=9e-143) | Symbols: delta-ADR | delta-adaptin | chr1:18036652-18039261 REVERSE LENGTH=869;; (*ITAG) Solyc03g119270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61959927-61962839 transcript_region:SL2.40ch03:61959927..61962839- go_terms:GO:0030276 functional_description:"AP-3 complex delta subunit-like protein (AHRD V1 ***- Q5QMU1_ORYSJ); contains Interpro domain(s) IPR017105 Adaptor protein complex AP-3, delta subunit "; GO:0030276 NbS00032040g0004.1 protein AED:0.60 eAED:0.60 QI:0|0|0|0.33|1|1|3|0|90; (*ITAG) Solyc03g119270.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61959927-61962839 transcript_region:SL2.40ch03:61959927..61962839- go_terms:GO:0030276 functional_description:"AP-3 complex delta subunit-like protein (AHRD V1 ***- Q5QMU1_ORYSJ); contains Interpro domain(s) IPR017105 Adaptor protein complex AP-3, delta subunit "; GO:0030276 NbS00002582g0007.1 protein AED:0.02 eAED:0.02 QI:332|1|1|1|1|1|3|62|280; (*GB) gi|350537881|ref|NP_001234571.1| (e_value=3e-91) homeodomain protein [Solanum lycopersicum];; (*SWP) sp|Q940J1|ATB16_ARATH (e_value=2e-40) Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2;; (*TAIR) AT4G40060.1 (e_value=2e-41) | Symbols: ATHB16, ATHB-16, HB16 | homeobox protein 16 | chr4:18571682-18572774 REVERSE LENGTH=294;; (*ITAG) Solyc04g074700.2.1 (e_value=7e-114) genomic_reference:SL2.40ch04 gene_region:58209625-58212759 transcript_region:SL2.40ch04:58209625..58212759- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein (AHRD V1 *-*- Q9FXN8_ZINEL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00050769g0005.1 protein AED:0.23 eAED:0.26 QI:0|1|0.57|1|1|1|7|0|624; (*GB) gi|255549175|ref|XP_002515642.1| (e_value=2e-16) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT3G62300.2 (e_value=2e-15) | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 | chr3:23054247-23057081 FORWARD LENGTH=723;; (*ITAG) Solyc03g121650.2.1 (e_value=1e-151) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00051748g0002.1 protein AED:0.31 eAED:0.34 QI:0|0.33|0.30|1|1|1|13|0|605; (*GB) gi|225450545|ref|XP_002281646.1| (e_value=2e-171) PREDICTED: probable Xaa-Pro aminopeptidase 3 [Vitis vinifera];; (*SWP) sp|Q0E0Y3|PUS7_ORYSJ (e_value=2e-67) RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2;; (*TAIR) AT1G09300.1 (e_value=2e-164) | Symbols: | Metallopeptidase M24 family protein | chr1:3003981-3008131 FORWARD LENGTH=493;; (*ITAG) Solyc01g100740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82456990-82467668 transcript_region:SL2.40ch01:82456990..82467668+ go_terms:GO:0030145,GO:0009987 functional_description:"Xaa-pro dipeptidase (AHRD V1 ***- C1GRT5_PARBA); contains Interpro domain(s) IPR000994 Peptidase M24, structural domain "; GO:0030145,GO:0009987 NbS00016634g0004.1 protein AED:0.34 eAED:0.37 QI:0|0.5|0.4|1|0.25|0.6|5|0|318; (*GB) gi|224115898|ref|XP_002317152.1| (e_value=2e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=3e-87) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=4e-109) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc02g081140.2.1 (e_value=1e-146) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00002220g0002.1 protein AED:0.03 eAED:0.03 QI:126|1|1|1|1|1|2|551|293; (*GB) gi|147846631|emb|CAN79495.1| (e_value=2e-62) hypothetical protein VITISV_020749 [Vitis vinifera];; (*SWP) sp|Q9M2U1|DOF36_ARATH (e_value=2e-47) Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2;; (*TAIR) AT3G55370.1 (e_value=2e-48) | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527198-20528876 FORWARD LENGTH=323;; (*ITAG) Solyc05g054510.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63565358-63566445 transcript_region:SL2.40ch05:63565358..63566445- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 *-*- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00060135g0008.1 protein AED:0.15 eAED:0.15 QI:612|0.75|0.77|0.88|0.75|0.77|9|374|439; (*GB) gi|12643806|sp|Q9LEC8.1|DHEB_NICPL (e_value=0.0) RecName: Full=Glutamate dehydrogenase B; Short=GDH B;; (*SWP) sp|Q9LEC8|DHEB_NICPL (e_value=0.0) Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1;; (*TAIR) AT5G18170.1 (e_value=0.0) | Symbols: GDH1 | glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411;; (*ITAG) Solyc10g078550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59665351-59668393 transcript_region:SL2.40ch10:59665351..59668393- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q8L6A0_TOBAC); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00060135g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.75|1|1|1|4|374|189; (*GB) gi|225441619|ref|XP_002281927.1| (e_value=5e-57) PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VZT0|NLAL1_ARATH (e_value=4e-53) Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1;; (*TAIR) AT3G03920.1 (e_value=3e-54) | Symbols: | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | chr3:1009123-1010379 REVERSE LENGTH=202;; (*ITAG) Solyc10g078540.1.1 (e_value=7e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59662818-59664625 transcript_region:SL2.40ch10:59662818..59664625+ go_terms:GO:0031429 functional_description:"H/ACA ribonucleoprotein complex subunit 1-like protein 1 (AHRD V1 *-*- B6TYV7_MAIZE); contains Interpro domain(s) IPR007504 Gar1 protein RNA-binding region "; GO:0031429 NbS00053127g0003.1 protein AED:0.03 eAED:0.03 QI:209|1|1|1|1|1|2|91|152; (*GB) gi|351727799|ref|NP_001237429.1| (e_value=1e-37) uncharacterized protein LOC100305838 [Glycine max];; (*SWP) sp|Q67A25|NCS_THLFG (e_value=2e-21) S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1;; (*ITAG) Solyc07g005370.2.1 (e_value=3e-77) genomic_reference:SL2.40ch07 gene_region:288360-289609 transcript_region:SL2.40ch07:288360..289609- go_terms:GO:0032259,GO:0009607 functional_description:"Norcoclaurine synthase (AHRD V1 ***- B6E2Z2_PAPSO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0032259,GO:0009607 NbS00018576g0001.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|224083141|ref|XP_002306953.1| (e_value=4e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L9W3|ATL23_ARATH (e_value=9e-38) E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23 PE=1 SV=2;; (*TAIR) AT5G42200.1 (e_value=7e-39) | Symbols: | RING/U-box superfamily protein | chr5:16860523-16861014 FORWARD LENGTH=163;; (*ITAG) Solyc04g081890.1.1 (e_value=3e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63347131-63347535 transcript_region:SL2.40ch04:63347131..63347535+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00004352g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.76|1|0.91|0.92|13|5|592; (*GB) gi|359492972|ref|XP_002285626.2| (e_value=0.0) PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=2e-24) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT1G09890.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3214237-3217386 REVERSE LENGTH=617;; (*ITAG) Solyc04g076640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59132414-59136709 transcript_region:SL2.40ch04:59132414..59136709- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00027674g0005.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|297739445|emb|CBI29627.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|P30236|HSP41_SOYBN (e_value=2e-43) 22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1;; (*TAIR) AT4G10250.1 (e_value=1e-44) | Symbols: ATHSP22.0 | HSP20-like chaperones superfamily protein | chr4:6370537-6371124 FORWARD LENGTH=195;; (*ITAG) Solyc01g102960.2.1 (e_value=7e-91) genomic_reference:SL2.40ch01 gene_region:83371681-83372560 transcript_region:SL2.40ch01:83371681..83372560+ functional_description:"class IV heat shock protein (AHRD V1 ***- B6T3F5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00027674g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|228; (*GB) gi|225450869|ref|XP_002284212.1| (e_value=3e-120) PREDICTED: germin-like protein subfamily 1 member 13-like [Vitis vinifera];; (*SWP) sp|P92996|GL120_ARATH (e_value=1e-102) Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1;; (*TAIR) AT5G39190.1 (e_value=1e-103) | Symbols: GLP2A, ATGER2, GER2 | germin-like protein 2 | chr5:15692771-15693546 REVERSE LENGTH=222;; (*ITAG) Solyc01g102900.2.1 (e_value=6e-146) genomic_reference:SL2.40ch01 gene_region:83330448-83331550 transcript_region:SL2.40ch01:83330448..83331550- go_terms:GO:0050162 functional_description:"Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00027674g0024.1 protein AED:0.23 eAED:0.25 QI:60|0.85|0.73|1|0.64|0.86|15|377|761; (*GB) gi|359486200|ref|XP_002268805.2| (e_value=0.0) PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like [Vitis vinifera];; (*SWP) sp|Q15020|SART3_HUMAN (e_value=3e-67) Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo sapiens GN=SART3 PE=1 SV=1;; (*TAIR) AT4G24270.1 (e_value=0.0) | Symbols: EMB140 | EMBRYO DEFECTIVE 140 | chr4:12581765-12587293 REVERSE LENGTH=816;; (*ITAG) Solyc01g102970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83373391-83386730 transcript_region:SL2.40ch01:83373391..83386730+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* Q5CPB6_CRYHO); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00027674g0021.1 protein AED:0.24 eAED:0.27 QI:0|0|0|0.66|0.2|0.33|6|0|550; (*GB) gi|255553307|ref|XP_002517696.1| (e_value=2e-61) TMV resistance protein N, putative [Ricinus communis];; (*TAIR) AT5G36930.2 (e_value=3e-19) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc01g113620.1.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:82315767-82320596 transcript_region:SL2.40ch01:82315767..82320596+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"NBS-LRR resistance protein (Fragment) (AHRD V1 *-*- C1K2I0_ROSHC); contains Interpro domain(s) IPR002182 NB-ARC "; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbS00027674g0018.1 protein AED:0.26 eAED:0.28 QI:60|0.69|0.66|0.96|0.80|0.85|27|105|1426; (*GB) gi|225465288|ref|XP_002270977.1| (e_value=0.0) PREDICTED: methionine S-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9LTB2|MMT1_ARATH (e_value=0.0) Methionine S-methyltransferase OS=Arabidopsis thaliana GN=MMT1 PE=2 SV=1;; (*TAIR) AT5G49810.1 (e_value=0.0) | Symbols: MMT | methionine S-methyltransferase | chr5:20239418-20246046 FORWARD LENGTH=1071;; (*ITAG) Solyc01g102940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83352910-83360308 transcript_region:SL2.40ch01:83352910..83360308+ go_terms:GO:0008757 functional_description:"Methionine s-methyltransferase (AHRD V1 **** B9N0J3_POPTR); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0008757 NbS00027674g0025.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.66|3|0|262; (*GB) gi|147852242|emb|CAN80134.1| (e_value=1e-108) hypothetical protein VITISV_012033 [Vitis vinifera];; (*SWP) sp|P92996|GL120_ARATH (e_value=3e-93) Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1;; (*TAIR) AT5G39190.1 (e_value=2e-94) | Symbols: GLP2A, ATGER2, GER2 | germin-like protein 2 | chr5:15692771-15693546 REVERSE LENGTH=222;; (*ITAG) Solyc01g102900.2.1 (e_value=1e-143) genomic_reference:SL2.40ch01 gene_region:83330448-83331550 transcript_region:SL2.40ch01:83330448..83331550- go_terms:GO:0050162 functional_description:"Germin-like protein 4 (AHRD V1 ***- A8QK90_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00001915g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|587; (*GB) gi|297743056|emb|CBI35923.3| (e_value=7e-43) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G72790.1 (e_value=4e-20) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:27394848-27396533 FORWARD LENGTH=561;; (*ITAG) Solyc03g121890.1.1 (e_value=1e-179) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:63973074-63974825 transcript_region:SL2.40ch03:63973074..63974825+ functional_description:"Os01g0584100 protein (Fragment) (AHRD V1 *-*- Q0JLP7_ORYSJ)"; NbS00013983g0004.1 protein AED:0.33 eAED:0.34 QI:0|1|0.66|1|1|1|3|0|180; (*GB) gi|225423987|ref|XP_002282662.1| (e_value=9e-62) PREDICTED: uncharacterized protein LOC100266248 [Vitis vinifera];; (*TAIR) AT1G68490.1 (e_value=1e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc05g009360.2.1 (e_value=5e-89) genomic_reference:SL2.40ch05 gene_region:3502364-3504879 transcript_region:SL2.40ch05:3502364..3504879- functional_description:"Unknown Protein (AHRD V1)"; NbS00057160g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|659; (*GB) gi|255564442|ref|XP_002523217.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26920.1 (e_value=1e-140) | Symbols: | Ubiquitin-associated/translation elongation factor EF1B protein | chr2:11489648-11491588 FORWARD LENGTH=646;; (*ITAG) Solyc11g072160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52481271-52483475 transcript_region:SL2.40ch11:52481271..52483475+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LFE2_ARALY); contains Interpro domain(s) IPR009060 UBA-like "; NbS00057160g0007.1 protein AED:0.33 eAED:0.36 QI:134|0.33|0.43|0.87|0.53|0.56|16|0|565; (*GB) gi|224058912|ref|XP_002299650.1| (e_value=3e-147) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19500.1 (e_value=1e-139) | Symbols: | Tryptophan/tyrosine permease | chr5:6579019-6581699 FORWARD LENGTH=505;; (*ITAG) Solyc11g072170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52484977-52493458 transcript_region:SL2.40ch11:52484977..52493458+ functional_description:"Tyrosine-specific transport protein (AHRD V1 ***- D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; NbS00062021g0002.1 protein AED:0.11 eAED:0.11 QI:122|1|1|1|0.5|0.66|3|157|222; (*GB) gi|225461148|ref|XP_002282744.1| (e_value=3e-93) PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XFT3|PSBQ1_ARATH (e_value=7e-19) Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3;; (*TAIR) AT3G01440.1 (e_value=2e-81) | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168478-169407 FORWARD LENGTH=220;; (*ITAG) Solyc10g006530.2.1 (e_value=7e-32) genomic_reference:SL2.40ch10 gene_region:1096397-1098696 transcript_region:SL2.40ch10:1096397..1098696+ go_terms:GO:0019898 functional_description:"Oxygen evolving enhancer 3 family protein (AHRD V1 *-*- D7L9Q0_ARALY); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "; GO:0019898 NbS00040739g0011.1 protein AED:0.15 eAED:0.16 QI:0|0.71|0.5|1|0.71|0.62|8|0|554; (*GB) gi|297740484|emb|CBI30666.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=7e-97) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT4G18570.1 (e_value=9e-142) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10231439-10234534 FORWARD LENGTH=642;; (*ITAG) Solyc02g077090.2.1 (e_value=3e-176) genomic_reference:SL2.40ch02 gene_region:36718822-36723310 transcript_region:SL2.40ch02:36718822..36723310- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; NbS00040739g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|225447824|ref|XP_002268032.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g36240-like [Vitis vinifera];; (*SWP) sp|Q9SJN2|PP187_ARATH (e_value=2e-165) Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1;; (*TAIR) AT2G36240.1 (e_value=1e-166) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:15195663-15197156 FORWARD LENGTH=497;; (*ITAG) Solyc08g006170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:885938-887362 transcript_region:SL2.40ch08:885938..887362+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00040739g0008.1 protein AED:0.49 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|106; (*ITAG) Solyc08g006170.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:885938-887362 transcript_region:SL2.40ch08:885938..887362+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00040739g0007.1 protein AED:0.47 eAED:0.90 QI:0|0|0|1|1|1|2|0|69 NbS00030256g0005.1 protein AED:0.15 eAED:0.22 QI:0|0|0|1|0|0|4|0|366; (*GB) gi|147846786|emb|CAN78503.1| (e_value=2e-23) hypothetical protein VITISV_023071 [Vitis vinifera];; (*SWP) sp|Q9FJU2|FBD37_ARATH (e_value=3e-15) Putative FBD-associated F-box protein At5g56700 OS=Arabidopsis thaliana GN=At5g56700 PE=2 SV=2;; (*TAIR) AT2G26860.1 (e_value=8e-16) | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr2:11452196-11453584 REVERSE LENGTH=405;; (*ITAG) Solyc04g057950.1.1 (e_value=5e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00037968g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.75|0.6|1|0.75|0.8|5|285|418; (*GB) gi|356530342|ref|XP_003533741.1| (e_value=3e-179) PREDICTED: probable inactive purple acid phosphatase 28-like [Glycine max];; (*SWP) sp|Q9LU72|PPA28_ARATH (e_value=3e-164) Probable inactive purple acid phosphatase 28 OS=Arabidopsis thaliana GN=PAP28 PE=2 SV=1;; (*TAIR) AT5G57140.1 (e_value=3e-165) | Symbols: ATPAP28, PAP28 | purple acid phosphatase 28 | chr5:23149926-23151370 FORWARD LENGTH=397;; (*ITAG) Solyc07g009460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4557747-4564247 transcript_region:SL2.40ch07:4557747..4564247+ go_terms:GO:0004722,GO:0003993 functional_description:"Icc family phosphohydrolase (AHRD V1 **-- D1JJW8_9BACE); contains Interpro domain(s) IPR011230 Phosphoesterase At2g46880 "; GO:0004722,GO:0003993 NbS00037968g0010.1 protein AED:0.18 eAED:0.18 QI:127|0.83|0.85|1|0.33|0.57|7|323|225; (*GB) gi|157742149|gb|ABV69697.1| (e_value=7e-156) 4/1 protein [Nicotiana benthamiana];; (*SWP) sp|Q1PE49|4ON1_ARATH (e_value=2e-61) Protein At-4/1 OS=Arabidopsis thaliana GN=At4g26020 PE=1 SV=1;; (*TAIR) AT4G26020.1 (e_value=2e-62) | Symbols: | unknown protein; Has 17652 Blast hits to 12460 proteins in 982 species: Archae - 248; Bacteria - 2077; Metazoa - 7446; Fungi - 1455; Plants - 656; Viruses - 34; Other Eukaryotes - 5736 (source: NCBI BLink). | chr4:13202249-13204028 REVERSE LENGTH=247; NbS00023423g0007.1 protein AED:0.25 eAED:0.26 QI:20|1|0.66|1|1|1|3|0|164; (*GB) gi|225426412|ref|XP_002270065.1| (e_value=5e-88) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=3e-77) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT1G63500.1 (e_value=1e-79) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487;; (*ITAG) Solyc12g099830.1.1 (e_value=3e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65155426-65160628 transcript_region:SL2.40ch12:65155426..65160628- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase 2 (AHRD V1 ***- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00023423g0006.1 protein AED:0.29 eAED:0.29 QI:141|1|0.75|1|1|1|4|510|103; (*GB) gi|15229083|ref|NP_190479.1| (e_value=1e-60) signal recognition particle subunit SRP9 [Arabidopsis thaliana];; (*SWP) sp|Q9SMU7|SRP09_ARATH (e_value=3e-62) Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=2 SV=1;; (*TAIR) AT3G49100.1 (e_value=3e-63) | Symbols: | Signal recognition particle, SRP9/SRP14 subunit | chr3:18196944-18198298 FORWARD LENGTH=103;; (*ITAG) Solyc12g099820.1.1 (e_value=2e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65150312-65154390 transcript_region:SL2.40ch12:65150312..65154390- go_terms:GO:0048500 functional_description:"Signal recognition particle protein (AHRD V1 ***- A9P8V6_POPTR); contains Interpro domain(s) IPR008832 Signal recognition particle, SRP9 subunit "; GO:0048500 NbS00009867g0010.1 protein AED:0.25 eAED:0.25 QI:90|0.8|0.81|1|0.6|0.63|11|461|335; (*GB) gi|224129652|ref|XP_002328769.1| (e_value=2e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54PW9|EI24_DICDI (e_value=2e-24) Protein EI24 homolog OS=Dictyostelium discoideum GN=DDB_G0284253 PE=3 SV=1;; (*TAIR) AT4G06676.1 (e_value=8e-137) | Symbols: | CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 264 Blast hits to 262 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | chr4:3898998-3901589 FORWARD LENGTH=320;; (*ITAG) Solyc10g044910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24383999-24396229 transcript_region:SL2.40ch10:24383999..24396229+ functional_description:"Etoposide-induced protein 2.4 homolog (AHRD V1 ***- EI24_HUMAN); contains Interpro domain(s) IPR009890 Etoposide-induced 2.4 "; NbS00009867g0011.1 protein AED:0.38 eAED:0.39 QI:440|0.5|0.57|1|0.5|0.71|7|0|231; (*GB) gi|255576223|ref|XP_002529005.1| (e_value=8e-112) Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis];; (*SWP) sp|Q3SWX0|NIPA2_BOVIN (e_value=3e-48) Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1;; (*TAIR) AT1G71900.1 (e_value=5e-114) | Symbols: | Protein of unknown function (DUF803) | chr1:27061754-27064053 FORWARD LENGTH=343;; (*ITAG) Solyc01g103760.2.1 (e_value=5e-121) genomic_reference:SL2.40ch01 gene_region:84049754-84055434 transcript_region:SL2.40ch01:84049754..84055434+ go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbS00009867g0012.1 protein AED:0.46 eAED:0.62 QI:0|0.66|0.25|1|0.33|0.75|4|0|128; (*GB) gi|255576223|ref|XP_002529005.1| (e_value=3e-48) Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis];; (*SWP) sp|Q9JJC8|NIPA2_MOUSE (e_value=6e-16) Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1;; (*TAIR) AT1G34470.1 (e_value=3e-45) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc01g103760.2.1 (e_value=5e-56) genomic_reference:SL2.40ch01 gene_region:84049754-84055434 transcript_region:SL2.40ch01:84049754..84055434+ go_terms:GO:0005515 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C1GHB7_PARBD); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005515 NbS00018774g0011.1 protein AED:0.01 eAED:0.01 QI:74|0.5|0.33|1|1|1|3|0|611; (*GB) gi|255586107|ref|XP_002533717.1| (e_value=9e-155) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|F4ISY0|Y2837_ARATH (e_value=7e-40) WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1;; (*TAIR) AT2G38370.1 (e_value=7e-65) | Symbols: | Plant protein of unknown function (DUF827) | chr2:16072184-16074168 REVERSE LENGTH=522;; (*ITAG) Solyc09g042710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29569131-29572077 transcript_region:SL2.40ch09:29569131..29572077- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q7XIW7_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00024349g0004.1 protein AED:0.16 eAED:0.16 QI:116|1|1|1|0|0|2|23|92 NbS00038974g0006.1 protein AED:0.06 eAED:0.06 QI:83|1|1|1|0|0|4|240|148; (*GB) gi|52851174|emb|CAH58635.1| (e_value=3e-99) Ubiquitin-conjugating enzyme [Plantago major];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=5e-96) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=8e-97) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc03g033410.2.1 (e_value=5e-104) genomic_reference:SL2.40ch03 gene_region:9256675-9258706 transcript_region:SL2.40ch03:9256675..9258706- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 ***- UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00038974g0009.1 protein AED:0.19 eAED:0.20 QI:18|0.92|0.78|1|0.84|0.85|14|375|519; (*GB) gi|359476862|ref|XP_002262862.2| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 35-like [Vitis vinifera];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=0.0) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc03g033400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9246433-9256147 transcript_region:SL2.40ch03:9246433..9256147+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00004523g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|329; (*GB) gi|225446424|ref|XP_002274948.1| (e_value=3e-85) PREDICTED: zinc finger CCCH domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q9ZWA1|C3H2_ARATH (e_value=2e-57) Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1;; (*TAIR) AT1G03790.1 (e_value=1e-58) | Symbols: SOM | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:954589-955770 FORWARD LENGTH=393;; (*ITAG) Solyc07g053750.1.1 (e_value=3e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59504676-59505929 transcript_region:SL2.40ch07:59504676..59505929- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 2 (AHRD V1 *-*- C3H2_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00032015g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|224130486|ref|XP_002320849.1| (e_value=7e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41761.1 (e_value=1e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16711437-16711742 FORWARD LENGTH=101;; (*ITAG) Solyc01g095530.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:78523066-78523612 transcript_region:SL2.40ch01:78523066..78523612- functional_description:"Unknown Protein (AHRD V1)"; NbS00032015g0005.1 protein AED:0.08 eAED:0.08 QI:343|1|1|1|0.71|0.87|8|745|335; (*GB) gi|225454456|ref|XP_002280548.1| (e_value=0.0) PREDICTED: CMP-sialic acid transporter [Vitis vinifera];; (*SWP) sp|Q8LGE9|CSTR1_ARATH (e_value=6e-166) CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1;; (*TAIR) AT5G41760.2 (e_value=5e-167) | Symbols: | Nucleotide-sugar transporter family protein | chr5:16706978-16709204 FORWARD LENGTH=340;; (*ITAG) Solyc01g095540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78525146-78530438 transcript_region:SL2.40ch01:78525146..78530438- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 6 (AHRD V1 **** D7LWC1_ARALY); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005459 NbS00011560g0010.1 protein AED:0.28 eAED:0.28 QI:103|0.93|0.76|0.94|0.68|0.70|17|0|484; (*GB) gi|255545822|ref|XP_002513971.1| (e_value=0.0) queuine tRNA-ribosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q28HC6|TGT_XENTR (e_value=1e-165) Queuine tRNA-ribosyltransferase OS=Xenopus tropicalis GN=qtrt1 PE=2 SV=2;; (*ITAG) Solyc04g074710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58224199-58231405 transcript_region:SL2.40ch04:58224199..58231405- go_terms:GO:0008479,GO:0005515 functional_description:"Queuine tRNA-ribosyltransferase (AHRD V1 **** B9RJQ2_RICCO); contains Interpro domain(s) IPR004803 Queuine tRNA-ribosyltransferase "; GO:0008479,GO:0005515 NbS00011560g0011.1 protein AED:0.21 eAED:0.21 QI:309|0.75|0.69|1|0.75|0.53|13|0|1071; (*GB) gi|225459209|ref|XP_002285742.1| (e_value=0.0) PREDICTED: protein FAM91A1-like [Vitis vinifera];; (*SWP) sp|Q6TEP1|F91A1_DANRE (e_value=1e-75) Protein FAM91A1 OS=Danio rerio GN=fam91a1 PE=2 SV=2;; (*TAIR) AT1G35220.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 313 Blast hits to 185 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 200; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr1:12909293-12913916 FORWARD LENGTH=1005;; (*ITAG) Solyc04g074720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58236728-58248897 transcript_region:SL2.40ch04:58236728..58248897+ functional_description:"Fam91a1 protein (AHRD V1 *--- B2RYP3_RAT)"; NbS00018787g0010.1 protein AED:0.19 eAED:0.21 QI:377|0.5|0.2|0.8|0.5|0.4|5|0|449; (*GB) gi|255579745|ref|XP_002530711.1| (e_value=0.0) actin, putative [Ricinus communis];; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00018787g0017.1 protein AED:0.31 eAED:0.31 QI:0|0.83|0.42|1|0.83|0.85|7|0|294; (*GB) gi|255584867|ref|XP_002533149.1| (e_value=2e-161) catalytic, putative [Ricinus communis];; (*SWP) sp|Q2JMN2|RLMN_SYNJB (e_value=7e-103) Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rlmN PE=3 SV=1;; (*TAIR) AT2G39670.2 (e_value=1e-155) | Symbols: | Radical SAM superfamily protein | chr2:16534303-16536986 FORWARD LENGTH=431;; (*ITAG) Solyc06g030570.2.1 (e_value=3e-92) genomic_reference:SL2.40ch06 gene_region:16498440-16505098 transcript_region:SL2.40ch06:16498440..16505098+ go_terms:GO:0051536 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- B5W4V1_SPIMA); contains Interpro domain(s) IPR007197 Radical SAM "; GO:0051536 NbS00018787g0011.1 protein AED:0.49 eAED:0.49 QI:64|1|0.5|1|0|0|2|123|15 NbS00018787g0018.1 protein AED:0.20 eAED:0.20 QI:80|0.87|0.88|1|0.87|0.88|9|594|337; (*GB) gi|297738892|emb|CBI28137.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q03251|GRP8_ARATH (e_value=8e-15) Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1;; (*TAIR) AT5G19960.1 (e_value=2e-57) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6744029-6746133 FORWARD LENGTH=337;; (*ITAG) Solyc10g051390.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:47556796-47557568 transcript_region:SL2.40ch10:47556796..47557568+ go_terms:GO:0008266 functional_description:"RNA-binding glycine-rich protein-1b (AHRD V1 **** Q40427_NICSY); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00018787g0019.1 protein AED:0.08 eAED:0.11 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|356539012|ref|XP_003537994.1| (e_value=1e-32) PREDICTED: epsin-3-like [Glycine max];; (*TAIR) AT3G46540.1 (e_value=7e-24) | Symbols: | ENTH/VHS family protein | chr3:17134204-17135411 REVERSE LENGTH=307;; (*ITAG) Solyc01g110500.2.1 (e_value=2e-62) genomic_reference:SL2.40ch01 gene_region:88951518-88952931 transcript_region:SL2.40ch01:88951518..88952931+ go_terms:GO:0005488 functional_description:"Epsin 2-like protein (Fragment) (AHRD V1 *-*- D9HWY0_LAGLG); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00022956g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.25|1|0.33|0.5|4|0|289; (*GB) gi|359806136|ref|NP_001241193.1| (e_value=1e-49) uncharacterized protein LOC100812463 [Glycine max];; (*TAIR) AT5G67620.1 (e_value=2e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: microtubule; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26964891-26965720 REVERSE LENGTH=182;; (*ITAG) Solyc02g092240.2.1 (e_value=4e-84) genomic_reference:SL2.40ch02 gene_region:47966724-47969871 transcript_region:SL2.40ch02:47966724..47969871+ functional_description:"Os10g0352000 protein (Fragment) (AHRD V1 *-*- Q0IY85_ORYSJ)"; NbS00022956g0006.1 protein AED:0.36 eAED:0.72 QI:0|0|0|1|0|0|2|0|60 NbS00026414g0014.1 protein AED:0.13 eAED:0.16 QI:0|1|0.6|1|1|1|5|0|458; (*GB) gi|255576459|ref|XP_002529121.1| (e_value=0.0) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q1RJT3|ODP2_RICBR (e_value=7e-50) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1;; (*TAIR) AT3G25860.1 (e_value=3e-179) | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480;; (*ITAG) Solyc05g009530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3737122-3743261 transcript_region:SL2.40ch05:3737122..3743261- go_terms:GO:0004742 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0004742 NbS00026414g0016.1 protein AED:0.32 eAED:0.32 QI:343|0.92|0.93|1|0.28|0.4|15|1300|121; (*GB) gi|224081072|ref|XP_002306285.1| (e_value=2e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LF97|Y3295_ARATH (e_value=5e-60) CBS domain-containing protein CBSCBSPB3 OS=Arabidopsis thaliana GN=CBSCBSPB3 PE=1 SV=1;; (*TAIR) AT3G52950.2 (e_value=4e-61) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr3:19634866-19636536 FORWARD LENGTH=556;; (*ITAG) Solyc12g032950.1.1 (e_value=1e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:22261332-22286221 transcript_region:SL2.40ch12:22261332..22286221+ functional_description:"CBS domain-containing protein (AHRD V1 ***- D7LUC7_ARALY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00040302g0007.1 protein AED:0.07 eAED:0.07 QI:163|0.5|0.4|1|0.75|0.8|5|0|594; (*GB) gi|359484689|ref|XP_002268798.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera];; (*TAIR) AT1G80530.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc03g117300.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60527438-60531300 transcript_region:SL2.40ch03:60527438..60531300+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00040302g0003.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|359484691|ref|XP_003633146.1| (e_value=4e-49) PREDICTED: uncharacterized protein LOC100852953 [Vitis vinifera];; (*TAIR) AT5G11090.1 (e_value=1e-44) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc03g117290.1.1 (e_value=4e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60525251-60525697 transcript_region:SL2.40ch03:60525251..60525697+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00011094g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.33|1|1|3|0|120; (*GB) gi|225447219|ref|XP_002277708.1| (e_value=9e-27) PREDICTED: uncharacterized protein LOC100241481 isoform 2 [Vitis vinifera];; (*TAIR) AT4G03420.1 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF789) | chr4:1512226-1513594 FORWARD LENGTH=310;; (*ITAG) Solyc01g016510.1.1 (e_value=7e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:20439523-20440743 transcript_region:SL2.40ch01:20439523..20440743+ functional_description:"AT4g03420/F9H3_4 (AHRD V1 ***- Q8S9K9_ARATH); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00011094g0003.1 protein AED:0.37 eAED:0.40 QI:0|0|0|0.2|1|1|5|0|253; (*GB) gi|255569401|ref|XP_002525668.1| (e_value=3e-55) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03610.1 (e_value=1e-49) | Symbols: | Protein of unknown function (DUF789) | chr1:901304-902672 FORWARD LENGTH=308;; (*ITAG) Solyc01g006080.1.1 (e_value=3e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:747083-750281 transcript_region:SL2.40ch01:747083..750281- functional_description:"Protein involved in mRNA turnover and stability (ISS) (AHRD V1 ***- Q00X49_OSTTA); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00011094g0106.1 protein AED:0.25 eAED:0.35 QI:0|0|0|1|1|1|3|0|226 NbS00011094g0104.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|3|0|157 NbS00011094g0210.1 protein AED:0.05 eAED:0.05 QI:280|1|0.94|1|0.94|0.94|19|549|883 NbS00011094g0211.1 protein AED:0.18 eAED:0.19 QI:0|1|0.75|1|1|1|4|0|248 NbS00011094g0205.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|1|1|2|0|76 NbS00011094g0215.1 protein AED:0.20 eAED:0.23 QI:0|0.25|0.15|0.92|0.66|0.69|13|0|968 NbS00060132g0006.1 protein AED:0.25 eAED:0.25 QI:317|0.78|0.7|1|0.63|0.6|20|0|973; (*GB) gi|225457871|ref|XP_002269356.1| (e_value=3e-168) PREDICTED: probable cinnamyl alcohol dehydrogenase 6 [Vitis vinifera];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=4e-145) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT4G39330.1 (e_value=2e-109) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc12g010740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3661121-3669447 transcript_region:SL2.40ch12:3661121..3669447+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00005506g0018.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|2|0|673; (*GB) gi|359478866|ref|XP_002276162.2| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g58300 [Vitis vinifera];; (*SWP) sp|Q9LVM0|Y5830_ARATH (e_value=0.0) Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1;; (*TAIR) AT5G58300.2 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:23572821-23574871 FORWARD LENGTH=654;; (*ITAG) Solyc09g030450.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:20327369-20330437 transcript_region:SL2.40ch09:20327369..20330437- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00005506g0016.1 protein AED:0.13 eAED:0.15 QI:234|0.8|0.66|1|0.4|0.33|6|0|601; (*GB) gi|225439115|ref|XP_002266425.1| (e_value=3e-141) PREDICTED: uncharacterized protein LOC100267210 [Vitis vinifera];; (*TAIR) AT3G08670.1 (e_value=3e-65) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51540.1); Has 48380 Blast hits to 29827 proteins in 1356 species: Archae - 46; Bacteria - 5589; Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses - 905; Other Eukaryotes - 9050 (source: NCBI BLink). | chr3:2633946-2636536 FORWARD LENGTH=567;; (*ITAG) Solyc06g054690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33932161-33935931 transcript_region:SL2.40ch06:33932161..33935931- functional_description:"Transposon protein CACTA En/Spm sub-class (AHRD V1 *--- B6SWV7_MAIZE)"; NbS00005506g0010.1 protein AED:1.00 eAED:1.00 QI:0|0|0|0.25|1|1|4|0|203 NbS00005506g0019.1 protein AED:0.29 eAED:0.36 QI:146|0.76|0.83|1|0.64|0.72|18|0|522; (*GB) gi|255575616|ref|XP_002528708.1| (e_value=2e-65) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G38580.1 (e_value=3e-46) | Symbols: | Mitochondrial ATP synthase D chain-related protein | chr2:16138838-16142371 FORWARD LENGTH=482;; (*ITAG) Solyc09g016940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:11825120-11842285 transcript_region:SL2.40ch09:11825120..11842285+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023612g0003.1 protein AED:0.00 eAED:0.00 QI:599|1|1|1|1|1|2|884|128; (*GB) gi|217323620|gb|ACK38177.1| (e_value=9e-78) hydrogen peroxide-induced 1 [Nicotiana tabacum];; (*TAIR) AT3G03150.1 (e_value=3e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:727733-729357 REVERSE LENGTH=121;; (*ITAG) Solyc03g096840.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:52656957-52659784 transcript_region:SL2.40ch03:52656957..52659784- functional_description:"Seed specific protein Bn15D1B (AHRD V1 ***- B6TIB8_MAIZE)"; NbS00008701g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|147864567|emb|CAN78966.1| (e_value=5e-34) hypothetical protein VITISV_019939 [Vitis vinifera];; (*TAIR) AT3G23440.1 (e_value=4e-24) | Symbols: EDA6, MEE37 | embryo sac development arrest 6 | chr3:8404358-8404684 REVERSE LENGTH=108;; (*ITAG) Solyc09g090380.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65255425-65255868 transcript_region:SL2.40ch09:65255425..65255868- functional_description:"Genomic DNA chromosome 3 P1 clone MLM24 (AHRD V1 *-*- Q9LW53_ARATH)"; NbS00008029g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.77|0.9|0.9|1|1|10|321|562; (*GB) gi|297742723|emb|CBI35357.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P24555|PTRB_ECOLI (e_value=9e-113) Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2;; (*TAIR) AT1G50380.1 (e_value=0.0) | Symbols: | Prolyl oligopeptidase family protein | chr1:18662480-18666185 FORWARD LENGTH=710;; (*ITAG) Solyc02g050260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:24946017-24961150 transcript_region:SL2.40ch02:24946017..24961150+ go_terms:GO:0006508 functional_description:"Protease II (Oligopeptidase B) (AHRD V1 **-- A6GXZ7_FLAPJ); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0006508 NbS00005410g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|454; (*GB) gi|225470800|ref|XP_002263341.1| (e_value=0.0) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|Q2QM77|PID_ORYSJ (e_value=1e-112) Protein kinase PINOID OS=Oryza sativa subsp. japonica GN=PID PE=2 SV=1;; (*TAIR) AT1G53700.1 (e_value=2e-177) | Symbols: WAG1, PK3AT | WAG 1 | chr1:20048604-20050034 FORWARD LENGTH=476;; (*ITAG) Solyc07g056400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61589132-61590583 transcript_region:SL2.40ch07:61589132..61590583+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-6 (AHRD V1 *-** KS6A6_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00038886g0001.1 protein AED:0.21 eAED:0.43 QI:0|0|0|1|0|0|2|0|114; (*ITAG) Solyc08g078360.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59352176-59352790 transcript_region:SL2.40ch08:59352176..59352790- functional_description:"Unknown Protein (AHRD V1)"; NbS00001250g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|382; (*GB) gi|49240345|gb|AAT58045.1| (e_value=0.0) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=5e-135) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=3e-136) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00001250g0004.1 protein AED:0.49 eAED:1.00 QI:82|0|0|1|0|0|2|65|14 NbS00026881g0005.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|0.5|0.33|3|0|278; (*GB) gi|439489|dbj|BAA05077.1| (e_value=3e-47) zinc-finger DNA binding protein [Petunia x hybrida];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=2e-21) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=1e-22) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc01g107170.2.1 (e_value=9e-35) genomic_reference:SL2.40ch01 gene_region:86548794-86550092 transcript_region:SL2.40ch01:86548794..86550092+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc finger protein (AHRD V1 ***- A0T3Q5_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00033171g0008.1 protein AED:0.10 eAED:0.10 QI:264|1|1|1|0|0.2|5|343|118; (*GB) gi|225451517|ref|XP_002272710.1| (e_value=2e-71) PREDICTED: membrane-anchored ubiquitin-fold protein 4 [Vitis vinifera];; (*SWP) sp|Q9LSD8|MUB4_ARATH (e_value=4e-59) Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1;; (*TAIR) AT3G26980.1 (e_value=3e-60) | Symbols: MUB4 | membrane-anchored ubiquitin-fold protein 4 precursor | chr3:9946467-9947444 REVERSE LENGTH=120;; (*ITAG) Solyc02g094350.2.1 (e_value=2e-76) genomic_reference:SL2.40ch02 gene_region:49475541-49480207 transcript_region:SL2.40ch02:49475541..49480207- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00033171g0010.1 protein AED:0.19 eAED:0.34 QI:0|0|0.33|1|1|1|3|1034|179 NbS00001603g0005.1 protein AED:0.25 eAED:0.25 QI:154|1|1|1|0.85|0.86|15|225|415; (*GB) gi|225452650|ref|XP_002281959.1| (e_value=0.0) PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q86HG0|GMPPA_DICDI (e_value=4e-122) Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1;; (*TAIR) AT1G74910.2 (e_value=0.0) | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28135770-28138456 REVERSE LENGTH=415;; (*ITAG) Solyc03g113790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57888358-57893883 transcript_region:SL2.40ch03:57888358..57893883- go_terms:GO:0051015 functional_description:"Mannose-1-phosphate guanyltransferase (AHRD V1 ***- B6TBA0_MAIZE); contains Interpro domain(s) IPR005835 Nucleotidyl transferase "; GO:0051015 NbS00020686g0003.1 protein AED:0.00 eAED:0.00 QI:0|0|0.5|1|0|0.5|2|167|248; (*GB) gi|350539920|ref|NP_001233810.1| (e_value=4e-93) TCP transcription factor 15 [Solanum lycopersicum];; (*SWP) sp|Q9FMX2|TCP7_ARATH (e_value=1e-64) Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1;; (*TAIR) AT5G23280.1 (e_value=7e-66) | Symbols: | TCP family transcription factor | chr5:7843017-7843769 FORWARD LENGTH=250;; (*ITAG) Solyc01g008230.2.1 (e_value=8e-96) genomic_reference:SL2.40ch01 gene_region:2359382-2360678 transcript_region:SL2.40ch01:2359382..2360678- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00020686g0120.1 protein AED:0.22 eAED:0.22 QI:87|0.8|0.66|0.83|0.8|0.83|6|0|203 NbS00020686g0118.1 protein AED:0.22 eAED:0.22 QI:225|1|0.85|1|1|1|7|416|338 NbS00020686g0122.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|26|264 NbS00017634g0003.1 protein AED:0.06 eAED:0.07 QI:424|0.7|0.81|1|1|1|11|433|729; (*GB) gi|194396283|gb|ACF60511.1| (e_value=0.0) 1-D-deoxyxylulose 5-phosphate synthase [Nicotiana tabacum];; (*SWP) sp|O78328|DXS_CAPAN (e_value=0.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1;; (*TAIR) AT4G15560.1 (e_value=0.0) | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717;; (*ITAG) Solyc01g067890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69258969-69263260 transcript_region:SL2.40ch01:69258969..69263260- go_terms:GO:0016114,GO:0008152 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 1 (AHRD V1 ***- C7U110_SOLLC); contains Interpro domain(s) IPR005474 Transketolase, N-terminal IPR005475 Transketolase, central region IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0016114,GO:0008152 NbS00035268g0003.1 protein AED:0.20 eAED:0.26 QI:21|1|0.2|1|1|0.8|5|0|489; (*GB) gi|359472912|ref|XP_002279997.2| (e_value=2e-77) PREDICTED: putative zinc finger protein At1g68190-like [Vitis vinifera];; (*SWP) sp|Q9C9F4|COLX_ARATH (e_value=7e-36) Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1;; (*TAIR) AT1G68190.1 (e_value=5e-37) | Symbols: | B-box zinc finger family protein | chr1:25559384-25561004 FORWARD LENGTH=356;; (*ITAG) Solyc04g007470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1146534-1149345 transcript_region:SL2.40ch04:1146534..1149345+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005622 NbS00021594g0010.1 protein AED:0.16 eAED:0.23 QI:0|0.59|0.52|1|0.72|0.73|23|0|1646; (*GB) gi|255586801|ref|XP_002534015.1| (e_value=0.0) suppressor of ty, putative [Ricinus communis];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=8e-46) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT5G04290.1 (e_value=6e-150) | Symbols: KTF1, SPT5L | kow domain-containing transcription factor 1 | chr5:1196069-1202653 FORWARD LENGTH=1493;; (*ITAG) Solyc11g008150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2415664-2426131 transcript_region:SL2.40ch11:2415664..2426131- go_terms:GO:0032968 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-*- B6JZQ2_SCHJY); contains Interpro domain(s) IPR005100 Supt5 repeat "; GO:0032968 NbS00021594g0003.1 protein AED:0.30 eAED:0.30 QI:492|0.75|0.8|1|0.5|0.4|5|251|443; (*GB) gi|315272010|gb|ADU02586.1| (e_value=0.0) pectate lyase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q93Z04|PLY13_ARATH (e_value=0.0) Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1;; (*TAIR) AT5G04310.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:1203356-1207352 REVERSE LENGTH=518;; (*ITAG) Solyc11g008140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2407048-2410940 transcript_region:SL2.40ch11:2407048..2410940+ functional_description:"Pectate lyase family protein (AHRD V1 ***- D7LXH4_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; NbS00017911g0001.1 protein AED:0.18 eAED:0.18 QI:225|1|0.5|1|0|0|2|0|40 NbS00019469g0101.1 protein AED:0.09 eAED:0.09 QI:38|1|1|1|0.87|0.77|9|139|674 NbS00028666g0002.1 protein AED:0.21 eAED:0.23 QI:0|1|0|1|0|0|2|0|111; (*GB) gi|296082517|emb|CBI21522.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VWQ5|WRK50_ARATH (e_value=5e-36) Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=2 SV=1;; (*TAIR) AT5G26170.1 (e_value=4e-37) | Symbols: WRKY50, ATWRKY50 | WRKY DNA-binding protein 50 | chr5:9147176-9148128 REVERSE LENGTH=173;; (*ITAG) Solyc04g051690.2.1 (e_value=4e-61) genomic_reference:SL2.40ch04 gene_region:50163412-50166584 transcript_region:SL2.40ch04:50163412..50166584+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 ***- C9DI05_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00032248g0001.1 protein AED:0.40 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|146; (*ITAG) Solyc00g105750.1.1 (e_value=3e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15950858-15953790 transcript_region:SL2.40ch00:15950858..15953790+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00002637g0005.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|1|1|3|0|339; (*GB) gi|73624751|gb|AAZ79233.1| (e_value=5e-93) putative xylanase Xyn2 [Nicotiana tabacum];; (*TAIR) AT1G58370.1 (e_value=4e-73) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc04g077190.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:59708320-59715771 transcript_region:SL2.40ch04:59708320..59715771+ go_terms:GO:0031176 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *-** B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0031176 NbS00002637g0007.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.75|0.33|0.5|4|0|213; (*GB) gi|73624751|gb|AAZ79233.1| (e_value=5e-46) putative xylanase Xyn2 [Nicotiana tabacum];; (*TAIR) AT1G58370.1 (e_value=7e-33) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917;; (*ITAG) Solyc04g077190.2.1 (e_value=5e-49) genomic_reference:SL2.40ch04 gene_region:59708320-59715771 transcript_region:SL2.40ch04:59708320..59715771+ go_terms:GO:0031176 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *-** B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0031176 NbS00026836g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.93|0.87|0.93|0.73|0.81|16|0|717; (*GB) gi|129563703|gb|ABO31100.1| (e_value=0.0) ovule receptor-like kinase 28 [Solanum chacoense];; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.1 (e_value=0.0) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=719;; (*ITAG) Solyc03g123740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64528644-64537461 transcript_region:SL2.40ch03:64528644..64537461- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00026836g0008.1 protein AED:0.28 eAED:0.28 QI:42|0.77|0.9|1|0.77|0.7|10|382|327; (*GB) gi|357514383|ref|XP_003627480.1| (e_value=0.0) 26S protease regulatory subunit [Medicago truncatula];; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=8e-145) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=6e-146) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=1e-152) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00012617g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.66|1|1|1|6|69|793; (*GB) gi|225433189|ref|XP_002281630.1| (e_value=0.0) PREDICTED: kinesin-like protein KIF11-like [Vitis vinifera];; (*SWP) sp|Q9I869|KF22A_XENLA (e_value=4e-30) Kinesin-like protein KIF22-A OS=Xenopus laevis GN=kif22-a PE=1 SV=1;; (*TAIR) AT4G14330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8244228-8247286 FORWARD LENGTH=869;; (*ITAG) Solyc03g005620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:446878-450640 transcript_region:SL2.40ch03:446878..450640- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- O23291_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00007484g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|33667908|gb|AAQ24533.1| (e_value=1e-73) P18 [Solanum chacoense];; (*SWP) sp|O64644|SAP18_ARATH (e_value=5e-58) Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1;; (*TAIR) AT2G45640.1 (e_value=4e-59) | Symbols: SAP18, ATSAP18 | SIN3 associated polypeptide P18 | chr2:18799881-18801323 REVERSE LENGTH=152;; (*ITAG) Solyc05g047690.2.1 (e_value=3e-76) genomic_reference:SL2.40ch05 gene_region:58318040-58323058 transcript_region:SL2.40ch05:58318040..58323058+ go_terms:GO:0003714 functional_description:"Histone deacetylase complex subunit SAP18 (AHRD V1 ***- B4FIB4_MAIZE); contains Interpro domain(s) IPR017250 Histone deacetylase complex, SAP18 subunit "; GO:0003714 NbS00017514g0002.1 protein AED:0.19 eAED:0.19 QI:60|-1|0|1|-1|1|1|0|118 NbS00018233g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|267; (*GB) gi|224082414|ref|XP_002306685.1| (e_value=2e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGD5|MKS1_ARATH (e_value=6e-14) Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2;; (*TAIR) AT3G18690.1 (e_value=4e-15) | Symbols: MKS1 | MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222;; (*ITAG) Solyc06g060470.1.1 (e_value=1e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34887486-34888208 transcript_region:SL2.40ch06:34887486..34888208+ go_terms:GO:0005515 functional_description:"VQ motif family protein (AHRD V1 *-*- B6SZE5_MAIZE); contains Interpro domain(s) IPR008889 VQ "; GO:0005515 NbS00019458g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|85; (*ITAG) Solyc07g052260.2.1 (e_value=1e-11) genomic_reference:SL2.40ch07 gene_region:58079750-58080236 transcript_region:SL2.40ch07:58079750..58080236- functional_description:"Unknown Protein (AHRD V1)"; NbS00040079g0006.1 protein AED:0.23 eAED:0.23 QI:76|0.87|0.88|1|0.5|0.66|9|166|410; (*GB) gi|225427804|ref|XP_002275430.1| (e_value=2e-137) PREDICTED: pseudouridine kinase [Vitis vinifera];; (*TAIR) AT1G49350.1 (e_value=3e-99) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:18265070-18267034 FORWARD LENGTH=378;; (*ITAG) Solyc01g109450.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88152550-88158268 transcript_region:SL2.40ch01:88152550..88158268- go_terms:GO:0006014 functional_description:"Kinase PfkB family (AHRD V1 *-*- D7N8Y3_9FIRM); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0006014 NbS00039630g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|121; (*GB) gi|255573169|ref|XP_002527514.1| (e_value=1e-22) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19615.1 (e_value=4e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6815073-6815354 REVERSE LENGTH=93;; (*ITAG) Solyc01g107090.2.1 (e_value=6e-59) genomic_reference:SL2.40ch01 gene_region:86490425-86491130 transcript_region:SL2.40ch01:86490425..86491130- functional_description:"Beta-1 4-xylosidase (AHRD V1 *-*- D7LA14_ARALY)"; NbS00039630g0002.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|1|1|2|0|176; (*GB) gi|147828045|emb|CAN64089.1| (e_value=6e-36) hypothetical protein VITISV_002950 [Vitis vinifera];; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=8e-25) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT3G50280.1 (e_value=6e-26) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:18637854-18639185 FORWARD LENGTH=443;; (*ITAG) Solyc02g062710.1.1 (e_value=7e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:29023605-29024963 transcript_region:SL2.40ch02:29023605..29024963+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* Q05HB0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00054876g0003.1 protein AED:0.11 eAED:0.12 QI:30|0.8|0.68|1|0.93|0.87|16|0|1088; (*GB) gi|225445280|ref|XP_002281165.1| (e_value=0.0) PREDICTED: DNA mismatch repair protein Msh6-2 [Vitis vinifera];; (*SWP) sp|Q9SMV7|MSH7_ARATH (e_value=0.0) DNA mismatch repair protein Msh6-2 OS=Arabidopsis thaliana GN=MSH6-2 PE=2 SV=1;; (*TAIR) AT3G24495.1 (e_value=0.0) | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109;; (*ITAG) Solyc07g018350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:10375455-10394223 transcript_region:SL2.40ch07:10375455..10394223+ go_terms:GO:0032137 functional_description:"DNA mismatch repair protein muts (AHRD V1 *-*- Q16P35_AEDAE); contains Interpro domain(s) IPR015536 DNA mismatch repair protein MutS-homolog MSH6 "; GO:0032137 NbS00036204g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|470; (*GB) gi|296086090|emb|CBI31531.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=1e-64) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT2G39980.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16688437-16689885 REVERSE LENGTH=482;; (*ITAG) Solyc05g052670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62027455-62028840 transcript_region:SL2.40ch05:62027455..62028840- go_terms:GO:0016747 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 1 (AHRD V1 **-- Q00M72_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00036204g0010.1 protein AED:0.15 eAED:0.15 QI:204|1|1|1|1|1|11|354|337; (*GB) gi|255571823|ref|XP_002526854.1| (e_value=7e-167) peroxisomal membrane protein pmp34, putative [Ricinus communis];; (*SWP) sp|Q76P23|PM34_DICDI (e_value=1e-53) Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1;; (*TAIR) AT2G39970.1 (e_value=8e-160) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00036204g0011.1 protein AED:0.17 eAED:0.19 QI:0|0.66|0.75|1|0.66|1|4|266|579; (*GB) gi|225449212|ref|XP_002279619.1| (e_value=1e-154) PREDICTED: uncharacterized protein LOC100251255 [Vitis vinifera];; (*TAIR) AT2G39950.1 (e_value=1e-92) | Symbols: | unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). | chr2:16676758-16680204 REVERSE LENGTH=636;; (*ITAG) Solyc05g052630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61990786-61996229 transcript_region:SL2.40ch05:61990786..61996229- functional_description:"Unknown Protein (AHRD V1)"; NbS00029454g0017.1 protein AED:0.03 eAED:0.03 QI:27|1|1|1|1|1|5|261|524; (*GB) gi|297744647|emb|CBI37909.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9URY4|YI01_SCHPO (e_value=1e-84) Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=2 SV=1;; (*TAIR) AT4G34880.1 (e_value=0.0) | Symbols: | Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466;; (*ITAG) Solyc01g111210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89303121-89308860 transcript_region:SL2.40ch01:89303121..89308860+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B6JZE9_SCHJY); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00029454g0020.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|0.66|0.5|10|0|1096; (*GB) gi|359474871|ref|XP_002277289.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264071 [Vitis vinifera];; (*TAIR) AT4G38760.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3414) | chr4:18085033-18096166 REVERSE LENGTH=1965;; (*ITAG) Solyc11g039870.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:26842834-26852925 transcript_region:SL2.40ch11:26842834..26852925- functional_description:"Unknown Protein (AHRD V1)"; NbS00029454g0015.1 protein AED:0.23 eAED:0.23 QI:193|0.68|0.69|0.84|0.88|0.92|26|0|1001; (*GB) gi|359474871|ref|XP_002277289.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264071 [Vitis vinifera];; (*TAIR) AT4G38760.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3414) | chr4:18085033-18096166 REVERSE LENGTH=1965;; (*ITAG) Solyc11g039880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:26862407-26888083 transcript_region:SL2.40ch11:26862407..26888083- functional_description:"Nucleoporin NUP188 homolog (AHRD V1 *-*- NU188_HUMAN)"; NbS00029454g0022.1 protein AED:0.25 eAED:0.25 QI:0|1|0.75|1|0.85|1|8|238|475; (*GB) gi|255543821|ref|XP_002512973.1| (e_value=0.0) xylulose kinase, putative [Ricinus communis];; (*TAIR) AT2G21370.1 (e_value=0.0) | Symbols: XK-1, XK1 | xylulose kinase-1 | chr2:9137582-9140050 REVERSE LENGTH=478;; (*ITAG) Solyc11g042940.1.1 (e_value=2e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34441359-34443470 transcript_region:SL2.40ch11:34441359..34443470+ go_terms:GO:0005975 functional_description:"Carbohydrate kinase FGGY (AHRD V1 ***- B7KH14_CYAP7); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0005975 NbS00029454g0010.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|6|0|213; (*GB) gi|147835847|emb|CAN70803.1| (e_value=8e-85) hypothetical protein VITISV_044067 [Vitis vinifera];; (*SWP) sp|P53849|GIS2_YEAST (e_value=2e-20) Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1;; (*TAIR) AT1G75560.2 (e_value=1e-67) | Symbols: | zinc knuckle (CCHC-type) family protein | chr1:28371420-28372717 REVERSE LENGTH=257;; (*ITAG) Solyc10g054330.1.1 (e_value=8e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50729498-50732695 transcript_region:SL2.40ch10:50729498..50732695+ go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 **-- B6T3W5_MAIZE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00015527g0007.1 protein AED:0.22 eAED:0.22 QI:723|1|1|1|0.5|0.55|9|1041|160; (*GB) gi|225438680|ref|XP_002277444.1| (e_value=1e-87) PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera];; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=2e-50) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT4G37030.1 (e_value=2e-85) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17452150-17454629 FORWARD LENGTH=569;; (*ITAG) Solyc02g090690.1.1 (e_value=4e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46802226-46805120 transcript_region:SL2.40ch02:46802226..46805120- functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 ***- Y3739_ARATH)"; NbS00015527g0009.1 protein AED:0.33 eAED:0.57 QI:0|0|0|0.75|0|0|4|0|527 NbS00058134g0024.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|1|1|2|0|264; (*GB) gi|350539279|ref|NP_001233873.1| (e_value=3e-170) 12-oxophytodienoate reductase 3 [Solanum lycopersicum];; (*SWP) sp|Q9FEW9|OPR3_SOLLC (e_value=1e-171) 12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1;; (*TAIR) AT2G06050.3 (e_value=6e-131) | Symbols: OPR3 | oxophytodienoate-reductase 3 | chr2:2359240-2361971 REVERSE LENGTH=391;; (*ITAG) Solyc07g007870.2.1 (e_value=7e-173) genomic_reference:SL2.40ch07 gene_region:2549365-2554937 transcript_region:SL2.40ch07:2549365..2554937+ go_terms:GO:0016629 functional_description:"NADH flavin oxidoreductase/12-oxophytodienoate reductase (AHRD V1 **-* Q2U7C4_ASPOR); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0016629 NbS00058134g0014.1 protein AED:0.48 eAED:0.59 QI:0|0.5|0.33|1|1|1|3|0|73; (*GB) gi|355002707|gb|AER51971.1| (e_value=7e-34) 12-oxophytodienoate reductase 3 [Solanum tuberosum];; (*SWP) sp|Q9FEW9|OPR3_SOLLC (e_value=4e-35) 12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1;; (*TAIR) AT2G06050.3 (e_value=1e-32) | Symbols: OPR3 | oxophytodienoate-reductase 3 | chr2:2359240-2361971 REVERSE LENGTH=391;; (*ITAG) Solyc07g007870.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:2549365-2554937 transcript_region:SL2.40ch07:2549365..2554937+ go_terms:GO:0016629 functional_description:"NADH flavin oxidoreductase/12-oxophytodienoate reductase (AHRD V1 **-* Q2U7C4_ASPOR); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0016629 NbS00058134g0008.1 protein AED:0.05 eAED:0.06 QI:0|0|0|0.33|1|1|3|0|457; (*GB) gi|297739008|emb|CBI28253.3| (e_value=6e-41) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g007840.1.1 (e_value=2e-147) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2501503-2507317 transcript_region:SL2.40ch07:2501503..2507317- functional_description:"Unknown Protein (AHRD V1)"; NbS00058134g0004.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|121955995|gb|ABM65702.1| (e_value=1e-24) 60S acidic ribosomal protein P2 [Juglans regia];; (*SWP) sp|Q9LH85|RLA23_ARATH (e_value=4e-24) 60S acidic ribosomal protein P2-3 OS=Arabidopsis thaliana GN=RPP2C PE=1 SV=1;; (*TAIR) AT3G28500.1 (e_value=3e-25) | Symbols: | 60S acidic ribosomal protein family | chr3:10682204-10682551 FORWARD LENGTH=115;; (*ITAG) Solyc07g007880.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:2554381-2554719 transcript_region:SL2.40ch07:2554381..2554719- go_terms:GO:0005840 functional_description:"60s acidic ribosomal protein-like protein (AHRD V1 *-*- Q3HVP0_SOLTU); contains Interpro domain(s) IPR001813 Ribosomal protein 60S "; GO:0005840 NbS00058134g0030.1 protein AED:0.19 eAED:0.19 QI:0|0.33|0.25|1|0|0|4|0|739; (*GB) gi|297739000|emb|CBI28245.3| (e_value=8e-99) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g007920.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2576653-2584770 transcript_region:SL2.40ch07:2576653..2584770- go_terms:GO:0005488 functional_description:"Telomere-associated protein RIF1 (AHRD V1 *-*- RIF1_MOUSE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00058134g0026.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|0.66|0.71|7|409|864; (*GB) gi|225445605|ref|XP_002282408.1| (e_value=0.0) PREDICTED: CCR4-NOT transcription complex subunit 10-like [Vitis vinifera];; (*SWP) sp|Q5ZIW2|CNOTA_CHICK (e_value=1e-52) CCR4-NOT transcription complex subunit 10 OS=Gallus gallus GN=CNOT10 PE=2 SV=1;; (*TAIR) AT5G35430.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:13662077-13665735 FORWARD LENGTH=786;; (*ITAG) Solyc07g007890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2555369-2565293 transcript_region:SL2.40ch07:2555369..2565293- go_terms:GO:0005515 functional_description:"CCR4-NOT transcription complex subunit 10 (AHRD V1 *-*- Q28FZ8_XENTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00058134g0028.1 protein AED:0.47 eAED:0.55 QI:0|0|0|1|0|0.33|3|0|122; (*GB) gi|224144141|ref|XP_002325200.1| (e_value=8e-28) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g007920.1.1 (e_value=5e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2576653-2584770 transcript_region:SL2.40ch07:2576653..2584770- go_terms:GO:0005488 functional_description:"Telomere-associated protein RIF1 (AHRD V1 *-*- RIF1_MOUSE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00058134g0029.1 protein AED:0.61 eAED:0.76 QI:0|0|0|0.33|0.5|0.66|3|0|94; (*ITAG) Solyc07g007920.1.1 (e_value=1e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2576653-2584770 transcript_region:SL2.40ch07:2576653..2584770- go_terms:GO:0005488 functional_description:"Telomere-associated protein RIF1 (AHRD V1 *-*- RIF1_MOUSE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00058134g0023.1 protein AED:0.08 eAED:0.19 QI:8|0|0|1|0|0|2|0|225; (*GB) gi|225445611|ref|XP_002282479.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100256011 [Vitis vinifera];; (*TAIR) AT2G10950.1 (e_value=3e-12) | Symbols: | BSD domain-containing protein | chr2:4315534-4317800 REVERSE LENGTH=336;; (*ITAG) Solyc07g007830.2.1 (e_value=2e-79) genomic_reference:SL2.40ch07 gene_region:2495331-2500572 transcript_region:SL2.40ch07:2495331..2500572+ functional_description:"BSD domain containing protein (AHRD V1 ***- B6TCH2_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00058134g0027.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|0|0|3|0|76; (*ITAG) Solyc07g007920.1.1 (e_value=2e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2576653-2584770 transcript_region:SL2.40ch07:2576653..2584770- go_terms:GO:0005488 functional_description:"Telomere-associated protein RIF1 (AHRD V1 *-*- RIF1_MOUSE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00001768g0005.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0|1|0.5|0.33|3|0|142; (*GB) gi|77416921|gb|ABA81856.1| (e_value=2e-84) unknown [Solanum tuberosum];; (*SWP) sp|P49210|RL9_ORYSJ (e_value=2e-79) 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3;; (*TAIR) AT1G33140.1 (e_value=3e-79) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc08g014550.2.1 (e_value=7e-90) genomic_reference:SL2.40ch08 gene_region:4642663-4644841 transcript_region:SL2.40ch08:4642663..4644841+ go_terms:GO:0003735 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR000702 Ribosomal protein L6 "; GO:0003735 NbS00001768g0006.1 protein AED:0.84 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|80 NbS00008033g0003.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|0|0|2|465|105; (*GB) gi|225470369|ref|XP_002271088.1| (e_value=4e-37) PREDICTED: uncharacterized protein LOC100263752 [Vitis vinifera];; (*TAIR) AT1G61065.1 (e_value=1e-37) | Symbols: | Protein of unknown function (DUF1218) | chr1:22490430-22491330 REVERSE LENGTH=180;; (*ITAG) Solyc02g078630.2.1 (e_value=5e-55) genomic_reference:SL2.40ch02 gene_region:37852944-37856341 transcript_region:SL2.40ch02:37852944..37856341- functional_description:"Os10g0495900 protein (Fragment) (AHRD V1 *-*- Q0IWP8_ORYSJ); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00033341g0004.1 protein AED:0.29 eAED:0.30 QI:0|0|0|1|0|0|2|0|197; (*GB) gi|357483365|ref|XP_003611969.1| (e_value=4e-27) hypothetical protein MTR_5g019880 [Medicago truncatula];; (*TAIR) AT5G66740.1 (e_value=3e-28) | Symbols: | Protein of unknown function (DUF620) | chr5:26647114-26648558 FORWARD LENGTH=370;; (*ITAG) Solyc04g080220.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:62060268-62063180 transcript_region:SL2.40ch04:62060268..62063180+ functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00014293g0001.1 protein AED:0.26 eAED:0.29 QI:1|0.88|0.7|1|0.88|0.8|10|0|586; (*GB) gi|296087683|emb|CBI34939.3| (e_value=3e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q86K80|U420_DICDI (e_value=3e-21) UPF0420 protein OS=Dictyostelium discoideum GN=DDB_G0277179 PE=3 SV=1;; (*TAIR) AT2G23470.1 (e_value=2e-157) | Symbols: RUS4 | Protein of unknown function, DUF647 | chr2:9999105-10001398 REVERSE LENGTH=520;; (*ITAG) Solyc02g065360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31132192-31137027 transcript_region:SL2.40ch02:31132192..31137027+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 *--- C5GE92_AJEDR); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbS00014293g0008.1 protein AED:0.09 eAED:0.09 QI:153|1|0.83|1|0.8|0.66|6|0|178; (*GB) gi|297745696|emb|CBI40981.3| (e_value=2e-57) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G37090.1 (e_value=4e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17477338-17478559 FORWARD LENGTH=186;; (*ITAG) Solyc02g065370.2.1 (e_value=8e-83) genomic_reference:SL2.40ch02 gene_region:31137485-31139994 transcript_region:SL2.40ch02:31137485..31139994- functional_description:"Unknown Protein (AHRD V1)"; NbS00029290g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|151; (*ITAG) Solyc01g098730.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:80929022-80929971 transcript_region:SL2.40ch01:80929022..80929971- functional_description:"Unknown Protein (AHRD V1)"; NbS00029290g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|28558782|gb|AAO45753.1| (e_value=7e-82) RING/c3HC4/PHD zinc finger-like protein [Cucumis melo subsp. melo];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=2e-49) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=2e-50) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=1e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00029290g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|255542560|ref|XP_002512343.1| (e_value=4e-45) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=7e-42) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=5e-43) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc03g112340.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00024081g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|225442885|ref|XP_002263563.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100244079 [Vitis vinifera];; (*TAIR) AT1G80450.1 (e_value=9e-22) | Symbols: | VQ motif-containing protein | chr1:30244155-30244688 REVERSE LENGTH=177;; (*ITAG) Solyc03g117500.1.1 (e_value=2e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:60698445-60698951 transcript_region:SL2.40ch03:60698445..60698951+ functional_description:"VQ motif-containing protein (AHRD V1 ***- D7KX58_ARALY); contains Interpro domain(s) IPR008889 VQ "; NbS00018894g0008.1 protein AED:0.21 eAED:0.21 QI:171|1|0.92|1|0.61|0.64|14|273|675; (*GB) gi|225446130|ref|XP_002275685.1| (e_value=0.0) PREDICTED: FGGY carbohydrate kinase domain-containing protein [Vitis vinifera];; (*SWP) sp|A2AJL3|FGGY_MOUSE (e_value=4e-178) FGGY carbohydrate kinase domain-containing protein OS=Mus musculus GN=Fggy PE=2 SV=1;; (*TAIR) AT4G30310.2 (e_value=0.0) | Symbols: | FGGY family of carbohydrate kinase | chr4:14831913-14835092 FORWARD LENGTH=579;; (*ITAG) Solyc07g006780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1624309-1635750 transcript_region:SL2.40ch07:1624309..1635750- go_terms:GO:0005975 functional_description:"Glycerol kinase (AHRD V1 ***- GLPK_PYRFU); contains Interpro domain(s) IPR006003 Carbohydrate kinase, FGGY-related "; GO:0005975 NbS00042464g0009.1 protein AED:0.17 eAED:0.20 QI:156|1|0.75|1|0.66|0.75|4|0|87; (*GB) gi|167600636|gb|ABZ89178.1| (e_value=9e-46) hypothetical protein 46C02.4 [Coffea canephora];; (*SWP) sp|Q2TBP7|MYCBP_BOVIN (e_value=1e-18) C-Myc-binding protein OS=Bos taurus GN=MYCBP PE=3 SV=3;; (*TAIR) AT2G14045.2 (e_value=9e-42) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:5907133-5908154 FORWARD LENGTH=122;; (*ITAG) Solyc04g009840.2.1 (e_value=7e-49) genomic_reference:SL2.40ch04 gene_region:3163517-3167544 transcript_region:SL2.40ch04:3163517..3167544+ functional_description:"C-Myc-binding protein (AHRD V1 ***- B4FK57_MAIZE)"; NbS00042464g0010.1 protein AED:0.21 eAED:0.21 QI:290|0.7|0.81|1|0.5|0.72|11|249|334; (*GB) gi|255557925|ref|XP_002519991.1| (e_value=1e-94) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9VKM6|VPS72_DROME (e_value=8e-13) Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1;; (*TAIR) AT2G36740.1 (e_value=1e-81) | Symbols: SWC2, ATSWC2 | sequence-specific DNA binding transcription factors;DNA binding;DNA binding | chr2:15407066-15409430 REVERSE LENGTH=365;; (*ITAG) Solyc04g009830.2.1 (e_value=2e-116) genomic_reference:SL2.40ch04 gene_region:3154104-3161025 transcript_region:SL2.40ch04:3154104..3161025- go_terms:GO:0005515 functional_description:"Stress responsive gene 6 protein Srg6 (AHRD V1 **-- Q8VWH9_HORVU); contains Interpro domain(s) IPR008895 YL1 nuclear "; GO:0005515 NbS00046218g0001.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|296085462|emb|CBI29194.3| (e_value=1e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|O49680|PP324_ARATH (e_value=2e-31) Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=2 SV=2;; (*TAIR) AT4G19220.1 (e_value=2e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=932;; (*ITAG) Solyc08g075350.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56643807-56646614 transcript_region:SL2.40ch08:56643807..56646614+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MGT8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046218g0003.1 protein AED:0.44 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|296085462|emb|CBI29194.3| (e_value=5e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G19220.1 (e_value=2e-11) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=932;; (*ITAG) Solyc08g075350.1.1 (e_value=2e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56643807-56646614 transcript_region:SL2.40ch08:56643807..56646614+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MGT8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046218g0007.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|2|0|607; (*GB) gi|225427607|ref|XP_002269121.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g19220, mitochondrial [Vitis vinifera];; (*SWP) sp|O49680|PP324_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g19220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=2 SV=2;; (*TAIR) AT4G19220.1 (e_value=4e-179) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=932;; (*ITAG) Solyc08g075350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56643807-56646614 transcript_region:SL2.40ch08:56643807..56646614+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MGT8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023931g0005.1 protein AED:0.26 eAED:0.26 QI:209|0.85|0.86|1|0.92|0.86|15|592|705; (*GB) gi|155008464|gb|ABS89271.1| (e_value=0.0) LRR receptor-like kinase [Solanum tuberosum];; (*SWP) sp|Q6R2K3|SRF3_ARATH (e_value=0.0) Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1;; (*TAIR) AT4G03390.1 (e_value=0.0) | Symbols: SRF3 | STRUBBELIG-receptor family 3 | chr4:1490912-1494553 REVERSE LENGTH=776;; (*ITAG) Solyc12g010740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3661121-3669447 transcript_region:SL2.40ch12:3661121..3669447+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00005720g0005.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|96; (*ITAG) Solyc08g080020.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60544916-60545230 transcript_region:SL2.40ch08:60544916..60545230+ go_terms:GO:0009611 functional_description:"Serine protease inhibitor potato inhibitor I-type family protein (AHRD V1 ***- D7LT19_ARALY); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00005720g0010.1 protein AED:0.01 eAED:0.01 QI:223|1|1|1|0.33|0.75|4|506|254; (*GB) gi|255538450|ref|XP_002510290.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q10Q26|Y3123_ORYSJ (e_value=8e-18) B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os03g0212300 PE=2 SV=1;; (*TAIR) AT4G00260.1 (e_value=6e-17) | Symbols: MEE45 | Transcriptional factor B3 family protein | chr4:114971-117051 FORWARD LENGTH=528;; (*ITAG) Solyc04g064830.2.1 (e_value=4e-124) genomic_reference:SL2.40ch04 gene_region:55121110-55123177 transcript_region:SL2.40ch04:55121110..55123177+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os03g0212300 (AHRD V1 ***- Y3123_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00005720g0113.1 protein AED:0.09 eAED:0.09 QI:313|0.5|0.71|0.71|0.66|0.71|7|697|303 NbS00005720g0125.1 protein AED:0.19 eAED:0.19 QI:59|0.66|0.81|1|0.8|0.87|16|546|597 NbS00005720g0119.1 protein AED:0.20 eAED:0.21 QI:0|0.64|0.55|1|0.52|0.72|18|868|815 NbS00005720g0123.1 protein AED:0.42 eAED:0.45 QI:0|0|0|1|0|0|2|0|258 NbS00031735g0001.1 protein AED:0.00 eAED:0.00 QI:211|1|1|1|0.5|0.33|3|568|59; (*GB) gi|356512833|ref|XP_003525120.1| (e_value=5e-20) PREDICTED: uncharacterized protein LOC100527671 [Glycine max];; (*ITAG) Solyc03g113670.2.1 (e_value=5e-35) genomic_reference:SL2.40ch03 gene_region:57795480-57797059 transcript_region:SL2.40ch03:57795480..57797059+ functional_description:"AT3g47831/T23J7 (AHRD V1 ***- Q94F43_ARATH)"; NbS00000101g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|1|1|3|0|204 NbS00049413g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|92; (*GB) gi|255569613|ref|XP_002525772.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G10265.1 (e_value=2e-17) | Symbols: | Wound-responsive family protein | chr4:6373226-6373477 REVERSE LENGTH=83;; (*ITAG) Solyc07g054750.1.1 (e_value=6e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60301265-60301525 transcript_region:SL2.40ch07:60301265..60301525- functional_description:"Wound induced protein (AHRD V1 ***- B6U0P9_MAIZE)"; NbS00045943g0001.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.33|1|1|3|0|118; (*GB) gi|3080407|emb|CAA18726.1| (e_value=4e-14) hypothetical protein (fragment) [Arabidopsis thaliana];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=1e-15) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.1 (e_value=8e-17) | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E | chr4:16836384-16839345 REVERSE LENGTH=710;; (*ITAG) Solyc01g112310.2.1 (e_value=2e-36) genomic_reference:SL2.40ch01 gene_region:90142605-90157819 transcript_region:SL2.40ch01:90142605..90157819+ go_terms:GO:0016020,GO:0055085 functional_description:"H(+)/Cl(-) exchange transporter ClcA (AHRD V1 *-*- C9PHM9_VIBFU); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00000935g0003.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|0.66|1|1|3|0|137; (*GB) gi|225454162|ref|XP_002271495.1| (e_value=5e-68) PREDICTED: actin-depolymerizing factor 10 [Vitis vinifera];; (*SWP) sp|Q9LQ81|ADF10_ARATH (e_value=4e-67) Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1;; (*TAIR) AT1G01750.1 (e_value=3e-68) | Symbols: ADF11 | actin depolymerizing factor 11 | chr1:275528-276126 FORWARD LENGTH=140;; (*ITAG) Solyc01g094400.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:77662552-77664208 transcript_region:SL2.40ch01:77662552..77664208- go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00030795g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|90; (*GB) gi|388514255|gb|AFK45189.1| (e_value=3e-33) unknown [Medicago truncatula];; (*TAIR) AT1G72690.1 (e_value=1e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27361223-27361745 FORWARD LENGTH=87;; (*ITAG) Solyc06g062770.2.1 (e_value=2e-35) genomic_reference:SL2.40ch06 gene_region:35983779-35985343 transcript_region:SL2.40ch06:35983779..35985343+ functional_description:"At1g17490/F1L3_4 (AHRD V1 ***- Q9LNQ6_ARATH)"; NbS00030795g0010.1 protein AED:0.19 eAED:0.19 QI:351|1|1|1|1|1|6|357|367; (*GB) gi|297743097|emb|CBI35964.3| (e_value=4e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=6e-49) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT1G17640.1 (e_value=5e-74) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:6067394-6069098 REVERSE LENGTH=369;; (*ITAG) Solyc03g121710.2.1 (e_value=4e-105) genomic_reference:SL2.40ch03 gene_region:63844015-63848152 transcript_region:SL2.40ch03:63844015..63848152+ go_terms:GO:0043047 functional_description:"RNA-binding motif, single-stranded-interacting protein 1 (AHRD V1 *--* RBMS1_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0043047 NbS00030795g0012.1 protein AED:0.23 eAED:0.23 QI:95|1|1|1|0.88|0.8|10|191|385; (*GB) gi|225442198|ref|XP_002276942.1| (e_value=5e-180) PREDICTED: 5'-nucleotidase surE [Vitis vinifera];; (*SWP) sp|Q24WI0|SURE_DESHY (e_value=1e-27) 5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1;; (*TAIR) AT1G72880.1 (e_value=1e-155) | Symbols: | Survival protein SurE-like phosphatase/nucleotidase | chr1:27423678-27425928 REVERSE LENGTH=385;; (*ITAG) Solyc06g062750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35975015-35978442 transcript_region:SL2.40ch06:35975015..35978442+ go_terms:GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 *-*- C7LSK7_DESBD); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0003993 NbS00030795g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.33|1|0.5|0.66|3|6|144; (*GB) gi|217071022|gb|ACJ83871.1| (e_value=2e-42) unknown [Medicago truncatula];; (*SWP) sp|Q15MS4|RL34_PSEA6 (e_value=3e-14) 50S ribosomal protein L34 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=rpmH PE=3 SV=1;; (*TAIR) AT3G13882.1 (e_value=2e-44) | Symbols: | Ribosomal protein L34 | chr3:4574600-4575852 FORWARD LENGTH=147;; (*ITAG) Solyc06g062760.2.1 (e_value=1e-83) genomic_reference:SL2.40ch06 gene_region:35979478-35983109 transcript_region:SL2.40ch06:35979478..35983109+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L34 (AHRD V1 ***- Q84R26_ARATH); contains Interpro domain(s) IPR000271 Ribosomal protein L34 "; GO:0005840 NbS00012049g0001.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.14|1|1|7|0|385; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-21) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00014930g0013.1 protein AED:0.31 eAED:0.31 QI:258|0.94|0.94|1|0.66|0.68|19|437|718; (*GB) gi|350539411|ref|NP_001234648.1| (e_value=0.0) GcpE [Solanum lycopersicum];; (*SWP) sp|F4K0E8|ISPG_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=ISPG PE=1 SV=1;; (*TAIR) AT5G60600.1 (e_value=0.0) | Symbols: GCPE, ISPG, CSB3, CLB4, HDS | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr5:24359447-24363274 FORWARD LENGTH=741;; (*ITAG) Solyc11g069380.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51063324-51069419 transcript_region:SL2.40ch11:51063324..51069419+ go_terms:GO:0044237,GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (AHRD V1 ***- A9ZN14_HEVBR); contains Interpro domain(s) IPR017178 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical "; GO:0044237,GO:0055114 NbS00014930g0014.1 protein AED:0.38 eAED:0.38 QI:192|0.91|0.92|1|0.83|0.76|13|260|450; (*GB) gi|225435307|ref|XP_002285127.1| (e_value=0.0) PREDICTED: ruvB-like 1-like [Vitis vinifera];; (*SWP) sp|Q9DE26|RUVB1_XENLA (e_value=0.0) RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1;; (*TAIR) AT5G22330.1 (e_value=0.0) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458;; (*ITAG) Solyc11g069370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51054007-51059005 transcript_region:SL2.40ch11:51054007..51059005+ go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00014930g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|179; (*ITAG) Solyc11g069390.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:51069932-51071249 transcript_region:SL2.40ch11:51069932..51071249- functional_description:"Unknown Protein (AHRD V1)"; NbS00014930g0009.1 protein AED:0.20 eAED:0.20 QI:113|1|1|1|1|1|12|370|584; (*GB) gi|224104643|ref|XP_002313512.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FF55|PDI14_ARATH (e_value=0.0) Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=2 SV=1;; (*TAIR) AT5G60640.1 (e_value=0.0) | Symbols: ATPDIL1-4, PDI2, ATPDI2, PDIL1-4 | PDI-like 1-4 | chr5:24371141-24373993 REVERSE LENGTH=597;; (*ITAG) Solyc11g069400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51072810-51079002 transcript_region:SL2.40ch11:51072810..51079002- go_terms:GO:0016853,GO:0045454,GO:0005783 functional_description:"Protein disulfide isomerase L-2 (AHRD V1 ***- B1Q2X5_SOYBN); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0016853,GO:0045454,GO:0005783 NbS00009518g0001.1 protein AED:0.17 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|214014136|gb|ACJ61779.1| (e_value=3e-67) ELI3, partial [Nicotiana benthamiana];; (*SWP) sp|P93257|MTDH_MESCR (e_value=4e-44) Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=8e-39) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011330.1.1 (e_value=4e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00018066g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0.5|1|0|0.5|2|720|180; (*GB) gi|359491764|ref|XP_003634319.1| (e_value=1e-45) PREDICTED: uncharacterized protein LOC100260307 isoform 2 [Vitis vinifera];; (*TAIR) AT5G08060.1 (e_value=1e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2580588-2580983 FORWARD LENGTH=131;; (*ITAG) Solyc02g088930.2.1 (e_value=1e-64) genomic_reference:SL2.40ch02 gene_region:45429155-45433888 transcript_region:SL2.40ch02:45429155..45433888+ functional_description:"Upf2 (AHRD V1 ***- A1YQZ3_VOLCA)"; NbS00015197g0007.1 protein AED:0.24 eAED:0.24 QI:344|0.5|0.6|1|0.5|0.4|5|0|597; (*GB) gi|116829914|gb|ABK27928.1| (e_value=0.0) coronatine-insensitive 1 [Nicotiana attenuata];; (*SWP) sp|O04197|COI1_ARATH (e_value=0.0) Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1;; (*TAIR) AT2G39940.1 (e_value=0.0) | Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592;; (*ITAG) Solyc05g052620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61968471-61974545 transcript_region:SL2.40ch05:61968471..61974545- go_terms:GO:0005515,GO:0004842 functional_description:"Coronatine-insensitive 1 (Fragment) (AHRD V1 *--- Q5VJQ1_TOBAC)"; GO:0005515,GO:0004842 NbS00007973g0001.1 protein AED:0.21 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|175; (*GB) gi|1732406|gb|AAB38748.1| (e_value=3e-63) S25-XP1 DNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=7e-48) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=5e-49) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc09g089930.1.1 (e_value=5e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64891312-64892034 transcript_region:SL2.40ch09:64891312..64892034+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00019577g0008.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|985; (*GB) gi|225428169|ref|XP_002278825.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264167 [Vitis vinifera];; (*TAIR) AT4G35240.2 (e_value=8e-174) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:16761334-16764324 REVERSE LENGTH=865;; (*ITAG) Solyc01g112050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89925103-89931698 transcript_region:SL2.40ch01:89925103..89931698- functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00027371g0002.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|125; (*ITAG) Solyc04g074560.1.1 (e_value=5e-18) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58131709-58131957 transcript_region:SL2.40ch04:58131709..58131957- functional_description:"Unknown Protein (AHRD V1)"; NbS00027371g0001.1 protein AED:0.48 eAED:0.75 QI:0|0|0|0.6|1|1|5|0|194; (*ITAG) Solyc04g074560.1.1 (e_value=7e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58131709-58131957 transcript_region:SL2.40ch04:58131709..58131957- functional_description:"Unknown Protein (AHRD V1)"; NbS00042702g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|0.75|0|0.5|4|0|228; (*GB) gi|357439807|ref|XP_003590181.1| (e_value=9e-71) R2R3-MYB transcription factor [Medicago truncatula];; (*SWP) sp|P81391|MYB05_ANTMA (e_value=4e-44) Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1;; (*TAIR) AT4G13480.1 (e_value=1e-60) | Symbols: AtMYB79, MYB79 | myb domain protein 79 | chr4:7836675-7837653 FORWARD LENGTH=261;; (*ITAG) Solyc05g053150.1.1 (e_value=6e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62426466-62427630 transcript_region:SL2.40ch05:62426466..62427630- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R074_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00034319g0004.1 protein AED:0.24 eAED:0.24 QI:388|0.75|0.8|1|0.75|0.6|5|0|320; (*GB) gi|350535901|ref|NP_001234475.1| (e_value=0.0) xyloglucan endotransglucosylase-hydrolase XTH7 [Solanum lycopersicum];; (*SWP) sp|Q8LF99|XTH6_ARATH (e_value=4e-167) Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2;; (*TAIR) AT5G65730.1 (e_value=3e-168) | Symbols: XTH6 | xyloglucan endotransglucosylase/hydrolase 6 | chr5:26299080-26300290 FORWARD LENGTH=292;; (*ITAG) Solyc02g091920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47711950-47713581 transcript_region:SL2.40ch02:47711950..47713581+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q2MK81_9ROSA); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00017128g0017.1 protein AED:0.06 eAED:0.06 QI:48|0.6|0.66|1|0.6|0.66|6|0|448; (*GB) gi|359476494|ref|XP_002269094.2| (e_value=7e-154) PREDICTED: protein SET DOMAIN GROUP 40-like [Vitis vinifera];; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=1e-130) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1;; (*TAIR) AT5G17240.1 (e_value=8e-132) | Symbols: SDG40 | SET domain group 40 | chr5:5666854-5668849 FORWARD LENGTH=491;; (*ITAG) Solyc02g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39905623-39908287 transcript_region:SL2.40ch02:39905623..39908287- go_terms:GO:0005975 functional_description:"SET domain-containing protein (AHRD V1 ***- D7LWY5_ARALY); contains Interpro domain(s) IPR001214 SET "; GO:0005975 NbS00017128g0016.1 protein AED:0.07 eAED:0.07 QI:0|1|0.90|1|0.7|0.81|11|0|475; (*GB) gi|296086441|emb|CBI32030.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80452|AMPD_ARATH (e_value=0.0) AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2;; (*TAIR) AT2G38280.2 (e_value=0.0) | Symbols: FAC1, ATAMPD | AMP deaminase, putative / myoadenylate deaminase, putative | chr2:16033767-16038793 REVERSE LENGTH=839;; (*ITAG) Solyc05g006910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1501303-1512471 transcript_region:SL2.40ch05:1501303..1512471- go_terms:GO:0042802,GO:0003876 functional_description:"AMP deaminase (AHRD V1 **** D3BRS6_POLPA); contains Interpro domain(s) IPR006329 AMP deaminase "; GO:0042802,GO:0003876 NbS00017128g0015.1 protein AED:0.50 eAED:0.50 QI:91|0|0|1|1|0|2|0|91; (*ITAG) Solyc05g006910.2.1 (e_value=3e-20) genomic_reference:SL2.40ch05 gene_region:1501303-1512471 transcript_region:SL2.40ch05:1501303..1512471- go_terms:GO:0042802,GO:0003876 functional_description:"AMP deaminase (AHRD V1 **** D3BRS6_POLPA); contains Interpro domain(s) IPR006329 AMP deaminase "; GO:0042802,GO:0003876 NbS00017128g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|86 NbS00000830g0012.1 protein AED:0.05 eAED:0.06 QI:398|0.9|0.81|1|0.9|1|11|0|677; (*GB) gi|225457612|ref|XP_002274079.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At2g33640-like [Vitis vinifera];; (*SWP) sp|Q8L5Y5|ZDH17_ARATH (e_value=2e-175) Probable S-acyltransferase At4g15080 OS=Arabidopsis thaliana GN=At4g15080 PE=1 SV=1;; (*TAIR) AT4G15080.1 (e_value=1e-176) | Symbols: | DHHC-type zinc finger family protein | chr4:8609085-8612229 REVERSE LENGTH=718;; (*ITAG) Solyc04g082650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63855181-63861096 transcript_region:SL2.40ch04:63855181..63861096+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00000830g0011.1 protein AED:0.15 eAED:0.15 QI:0|1|0.8|1|0.5|0.6|5|0|204; (*GB) gi|224083348|ref|XP_002306991.1| (e_value=5e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LM71|FKB18_ARATH (e_value=5e-80) Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2;; (*TAIR) AT1G20810.1 (e_value=4e-81) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr1:7232025-7233367 FORWARD LENGTH=232;; (*ITAG) Solyc04g082660.2.1 (e_value=2e-137) genomic_reference:SL2.40ch04 gene_region:63861559-63864472 transcript_region:SL2.40ch04:63861559..63864472+ go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- A8YBJ2_MICAE); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00000830g0007.1 protein AED:0.23 eAED:0.23 QI:182|1|0.8|1|0.75|0.6|5|0|373; (*GB) gi|225457618|ref|XP_002274236.1| (e_value=0.0) PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera];; (*SWP) sp|Q91YQ5|RPN1_MOUSE (e_value=5e-66) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1;; (*TAIR) AT1G76400.1 (e_value=2e-151) | Symbols: | Ribophorin I | chr1:28658713-28661672 REVERSE LENGTH=614;; (*ITAG) Solyc04g082670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63864900-63870443 transcript_region:SL2.40ch04:63864900..63870443+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 **** C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I "; GO:0042802,GO:0004579 NbS00011636g0021.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|360; (*GB) gi|225466273|ref|XP_002272437.1| (e_value=3e-179) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q9SS01|AAE20_ARATH (e_value=1e-145) Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=2 SV=1;; (*TAIR) AT1G65880.1 (e_value=1e-146) | Symbols: BZO1 | benzoyloxyglucosinolate 1 | chr1:24508633-24510737 REVERSE LENGTH=580;; (*ITAG) Solyc02g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39931191-39933262 transcript_region:SL2.40ch02:39931191..39933262+ go_terms:GO:0004467,GO:0018858 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** D0J2H7_COMT2); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467,GO:0018858 NbS00011636g0016.1 protein AED:0.11 eAED:0.11 QI:173|1|1|1|0|0|4|234|145; (*GB) gi|224079702|ref|XP_002305918.1| (e_value=2e-79) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CPU4|MGST3_MOUSE (e_value=8e-35) Microsomal glutathione S-transferase 3 OS=Mus musculus GN=Mgst3 PE=1 SV=1;; (*TAIR) AT1G65820.1 (e_value=1e-78) | Symbols: | microsomal glutathione s-transferase, putative | chr1:24485213-24486682 FORWARD LENGTH=146;; (*ITAG) Solyc02g081430.2.1 (e_value=3e-93) genomic_reference:SL2.40ch02 gene_region:39982861-39984643 transcript_region:SL2.40ch02:39982861..39984643+ go_terms:GO:0004601,GO:0004364 functional_description:"Microsomal glutathione S-transferase 3 (AHRD V1 **** B4FLH3_MAIZE); contains Interpro domain(s) IPR001129 Membrane-associated, eicosanoid and glutathione metabolism (MAPEG) "; GO:0004601,GO:0004364 NbS00011636g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.77|0.88|1|1|9|360|537; (*GB) gi|255570461|ref|XP_002526189.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q4V8K2|CTBL1_RAT (e_value=1e-111) Beta-catenin-like protein 1 OS=Rattus norvegicus GN=Ctnnbl1 PE=2 SV=1;; (*TAIR) AT3G02710.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:583184-585780 FORWARD LENGTH=529;; (*ITAG) Solyc02g081410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39968636-39972718 transcript_region:SL2.40ch02:39968636..39972718+ go_terms:GO:0042802 functional_description:"Beta-catenin-like protein 1 (AHRD V1 **-- B6SWH5_MAIZE); contains Interpro domain(s) IPR013180 Protein of unknown function DUF1716, eukaryotic "; GO:0042802 NbS00011636g0027.1 protein AED:0.09 eAED:0.09 QI:10|0.75|0.55|0.88|0.62|0.55|9|0|1080; (*GB) gi|359490550|ref|XP_002266964.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244982 [Vitis vinifera];; (*SWP) sp|B6SFA4|MAA3_ARATH (e_value=9e-42) Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1;; (*TAIR) AT1G65780.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24462958-24466888 REVERSE LENGTH=1065;; (*ITAG) Solyc02g081420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39973273-39980010 transcript_region:SL2.40ch02:39973273..39980010- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00011636g0026.1 protein AED:0.14 eAED:0.14 QI:230|0.4|0.5|1|0.8|0.83|6|76|389; (*GB) gi|255570457|ref|XP_002526187.1| (e_value=0.0) protease C56, putative [Ricinus communis];; (*SWP) sp|O59413|PFPI_PYRHO (e_value=8e-25) Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pfpI PE=1 SV=1;; (*TAIR) AT3G02720.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr3:586336-588088 FORWARD LENGTH=388;; (*ITAG) Solyc02g081400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39962544-39967049 transcript_region:SL2.40ch02:39962544..39967049- go_terms:GO:0016798 functional_description:"Intracellular protease PfpI family protein expressed (AHRD V1 ***- Q2R1V5_ORYSJ); contains Interpro domain(s) IPR006286 Peptidase C56, PfpI "; GO:0016798 NbS00011636g0025.1 protein AED:0.25 eAED:0.25 QI:187|0.88|0.8|1|0.66|0.7|10|0|502; (*GB) gi|356569663|ref|XP_003553017.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 4-like [Glycine max];; (*SWP) sp|Q8H191|PAO4_ARATH (e_value=0.0) Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1;; (*TAIR) AT1G65840.1 (e_value=0.0) | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1:24490173-24492728 FORWARD LENGTH=497;; (*ITAG) Solyc02g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39952097-39957169 transcript_region:SL2.40ch02:39952097..39957169- go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00011636g0017.1 protein AED:0.33 eAED:0.33 QI:190|0.75|1|1|0.5|0.8|5|348|144; (*GB) gi|400977|sp|P31583.1|RHN1_NICPL (e_value=9e-81) RecName: Full=Ras-related protein RHN1;; (*SWP) sp|P31583|RHN1_NICPL (e_value=3e-82) Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1;; (*TAIR) AT5G45130.1 (e_value=4e-67) | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200;; (*ITAG) Solyc02g036450.2.1 (e_value=2e-80) genomic_reference:SL2.40ch02 gene_region:21496239-21501862 transcript_region:SL2.40ch02:21496239..21501862- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00000954g0001.1 protein AED:0.07 eAED:0.10 QI:0|0|0|1|1|1|3|0|402; (*GB) gi|147806138|emb|CAN70007.1| (e_value=6e-166) hypothetical protein VITISV_038750 [Vitis vinifera];; (*SWP) sp|Q4KL91|S36A4_XENLA (e_value=5e-24) Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1;; (*TAIR) AT4G38250.1 (e_value=4e-138) | Symbols: | Transmembrane amino acid transporter family protein | chr4:17935533-17936843 FORWARD LENGTH=436;; (*ITAG) Solyc02g082510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40776670-40777947 transcript_region:SL2.40ch02:40776670..40777947+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00024574g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|0|478; (*GB) gi|24430421|dbj|BAC22609.1| (e_value=0.0) 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris];; (*SWP) sp|Q9LHE3|ASPG2_ARATH (e_value=7e-64) Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1;; (*TAIR) AT5G10770.1 (e_value=1e-156) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3403331-3405331 REVERSE LENGTH=474;; (*ITAG) Solyc08g067100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53220701-53224702 transcript_region:SL2.40ch08:53220701..53224702- go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- C0JA51_9ORYZ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00024574g0003.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|61 NbS00032546g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|1|3|344|554; (*GB) gi|225441959|ref|XP_002264087.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254979 isoform 1 [Vitis vinifera];; (*TAIR) AT5G50420.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:20530453-20532635 REVERSE LENGTH=566;; (*ITAG) Solyc06g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36260867-36264210 transcript_region:SL2.40ch06:36260867..36264210+ functional_description:"Protein-O-fucosyltransferase-like protein (AHRD V1 ***- D8RI05_SELML); contains Interpro domain(s) IPR019378 GDP-fucose protein O-fucosyltransferase "; NbS00032546g0005.1 protein AED:0.13 eAED:0.19 QI:0|0|0.5|1|0|0|2|377|86 NbS00005757g0001.1 protein AED:0.05 eAED:0.05 QI:428|0.5|0.66|1|0|0.33|3|0|535 NbS00005757g0007.1 protein AED:0.14 eAED:0.14 QI:210|0.91|0.76|1|0.75|0.84|13|0|309; (*GB) gi|115315688|gb|ABI93942.1| (e_value=0.0) syntaxin [Nicotiana benthamiana];; (*SWP) sp|Q9SRV7|SY131_ARATH (e_value=1e-138) Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1;; (*TAIR) AT3G03800.1 (e_value=1e-139) | Symbols: SYP131, ATSYP131 | syntaxin of plants 131 | chr3:969314-971460 FORWARD LENGTH=306;; (*ITAG) Solyc10g081580.1.1 (e_value=8e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61939031-61947634 transcript_region:SL2.40ch10:61939031..61947634+ go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00002173g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.88|0.8|1|0.88|1|10|0|735; (*GB) gi|225432430|ref|XP_002277039.1| (e_value=0.0) PREDICTED: squamosa promoter-binding-like protein 7-like [Vitis vinifera];; (*SWP) sp|Q8S9G8|SPL7_ARATH (e_value=2e-165) Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2;; (*TAIR) AT5G18830.2 (e_value=1e-167) | Symbols: SPL7 | squamosa promoter binding protein-like 7 | chr5:6276116-6280227 FORWARD LENGTH=775;; (*ITAG) Solyc01g080670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72426066-72434691 transcript_region:SL2.40ch01:72426066..72434691+ go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00002173g0006.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|0|0|2|0|155; (*ITAG) Solyc12g099550.1.1 (e_value=4e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65002727-65004286 transcript_region:SL2.40ch12:65002727..65004286- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00020575g0003.1 protein AED:0.34 eAED:0.39 QI:165|1|0.88|1|0.75|0.77|9|0|295; (*GB) gi|255560331|ref|XP_002521182.1| (e_value=4e-111) amino acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q0J709|UP12_ORYSJ (e_value=8e-74) Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2;; (*TAIR) AT5G04740.1 (e_value=7e-108) | Symbols: | ACT domain-containing protein | chr5:1368713-1371391 REVERSE LENGTH=301;; (*ITAG) Solyc11g006970.1.1 (e_value=1e-135) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1477794-1483280 transcript_region:SL2.40ch11:1477794..1483280+ functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 **-- UP12_ORYSJ)"; NbS00056758g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.4|1|0.5|0.6|5|0|372; (*GB) gi|225435429|ref|XP_002285411.1| (e_value=2e-157) PREDICTED: uncharacterized protein LOC100267343 isoform 1 [Vitis vinifera];; (*TAIR) AT3G20920.1 (e_value=1e-151) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=365;; (*ITAG) Solyc01g008470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2548568-2554744 transcript_region:SL2.40ch01:2548568..2554744+ go_terms:GO:0016021 functional_description:"Non-selective cation channel-2 family (AHRD V1 **-- C1N231_MICPS); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00056758g0006.1 protein AED:0.20 eAED:0.20 QI:141|1|1|1|0.6|0.83|6|438|251; (*GB) gi|148595726|emb|CAM12542.1| (e_value=3e-91) YA4 [Antirrhinum majus];; (*SWP) sp|Q9LXV5|NFYA1_ARATH (e_value=3e-45) Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1;; (*TAIR) AT5G12840.4 (e_value=2e-47) | Symbols: HAP2A, ATHAP2A, NF-YA1 | nuclear factor Y, subunit A1 | chr5:4051147-4052961 REVERSE LENGTH=271;; (*ITAG) Solyc01g008490.2.1 (e_value=4e-124) genomic_reference:SL2.40ch01 gene_region:2578536-2583600 transcript_region:SL2.40ch01:2578536..2583600- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit A-1 (AHRD V1 *-** B6TAR1_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0003700 NbS00019313g0001.1 protein AED:0.38 eAED:0.38 QI:0|0.8|0.5|0.83|1|1|6|0|298; (*GB) gi|225438978|ref|XP_002284329.1| (e_value=3e-152) PREDICTED: UPF0553 protein [Vitis vinifera];; (*SWP) sp|Q54II8|U553_DICDI (e_value=7e-69) UPF0553 protein OS=Dictyostelium discoideum GN=DDB_G0288723 PE=3 SV=1;; (*ITAG) Solyc02g092510.2.1 (e_value=2e-175) genomic_reference:SL2.40ch02 gene_region:48156357-48160516 transcript_region:SL2.40ch02:48156357..48160516+ functional_description:"UPF0553 protein C9orf64 (AHRD V1 **-- CI064_HUMAN); contains Interpro domain(s) IPR019438 Protein of unknown function DUF2419 "; NbS00019313g0002.1 protein AED:0.53 eAED:0.77 QI:0|0|0|0.5|1|1|4|0|242 NbS00019313g0011.1 protein AED:0.30 eAED:0.35 QI:0|0.57|0.5|1|0.71|0.75|8|0|457; (*GB) gi|147768857|emb|CAN78133.1| (e_value=0.0) hypothetical protein VITISV_034052 [Vitis vinifera];; (*SWP) sp|Q50228|FMDA_METME (e_value=6e-123) Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1;; (*TAIR) AT4G37560.1 (e_value=0.0) | Symbols: | Acetamidase/Formamidase family protein | chr4:17646489-17648457 FORWARD LENGTH=452;; (*ITAG) Solyc02g092530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48173217-48178515 transcript_region:SL2.40ch02:48173217..48178515- go_terms:GO:0004328 functional_description:"Formamidase (AHRD V1 **** B9VXW6_LUPAL); contains Interpro domain(s) IPR004304 Acetamidase/Formamidase "; GO:0004328 NbS00049428g0004.1 protein AED:0.25 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|341; (*GB) gi|225448055|ref|XP_002275577.1| (e_value=9e-76) PREDICTED: putative elongation of fatty acids protein DDB_G0272012-like [Vitis vinifera];; (*SWP) sp|Q86JM5|Y2012_DICDI (e_value=6e-19) Putative elongation of fatty acids protein DDB_G0272012 OS=Dictyostelium discoideum GN=DDB_G0272012 PE=3 SV=1;; (*TAIR) AT3G06470.1 (e_value=8e-77) | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278;; (*ITAG) Solyc10g046830.1.1 (e_value=3e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:32942286-32943083 transcript_region:SL2.40ch10:32942286..32943083+ go_terms:GO:0009922 functional_description:"Elongation of very long chain fatty acids protein 4 (AHRD V1 *-** B0W3U8_CULQU); contains Interpro domain(s) IPR002076 GNS1/SUR4 membrane protein "; GO:0009922 NbS00001851g0005.1 protein AED:0.13 eAED:0.14 QI:0|1|0.75|1|1|1|8|0|690; (*GB) gi|359476885|ref|XP_003631905.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100852980 [Vitis vinifera];; (*SWP) sp|Q8R323|RFC3_MOUSE (e_value=5e-48) Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1;; (*TAIR) AT5G27740.1 (e_value=7e-58) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc02g085060.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42656476-42660409 transcript_region:SL2.40ch02:42656476..42660409- functional_description:"Replication factor C subunit 5 (AHRD V1 *-*- B6T5I0_MAIZE)"; NbS00001851g0006.1 protein AED:0.20 eAED:0.20 QI:132|1|1|1|1|1|4|486|415; (*GB) gi|297735134|emb|CBI17496.3| (e_value=1e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9D0Z3|TMM53_MOUSE (e_value=5e-17) Transmembrane protein 53 OS=Mus musculus GN=Tmem53 PE=2 SV=1;; (*TAIR) AT2G18245.1 (e_value=7e-108) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:7937353-7939382 FORWARD LENGTH=398;; (*ITAG) Solyc02g085080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42664123-42666591 transcript_region:SL2.40ch02:42664123..42666591+ functional_description:"Transmembrane protein 53 (AHRD V1 *-*- B5X6E4_SALSA); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00001851g0010.1 protein AED:0.12 eAED:0.20 QI:74|0.25|0.2|1|0.5|0.6|5|0|265; (*GB) gi|388507222|gb|AFK41677.1| (e_value=2e-81) unknown [Lotus japonicus];; (*TAIR) AT4G36530.1 (e_value=2e-78) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17240120-17241518 REVERSE LENGTH=321;; (*ITAG) Solyc02g085070.1.1 (e_value=6e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42661304-42663398 transcript_region:SL2.40ch02:42661304..42663398+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MBG9_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00017043g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|215|275; (*GB) gi|357493827|ref|XP_003617202.1| (e_value=5e-83) Early nodulin-like protein [Medicago truncatula];; (*TAIR) AT1G08500.1 (e_value=2e-74) | Symbols: ENODL18, AtENODL18 | early nodulin-like protein 18 | chr1:2689110-2689881 FORWARD LENGTH=228;; (*ITAG) Solyc11g062350.1.1 (e_value=9e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46395469-46397262 transcript_region:SL2.40ch11:46395469..46397262- go_terms:GO:0009055 functional_description:"Plastocyanin-like domain containing protein expressed (AHRD V1 **-- Q2QRP3_ORYSJ); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00017043g0013.1 protein AED:0.23 eAED:0.26 QI:0|0|0|1|0.5|0.4|5|0|515; (*GB) gi|225450923|ref|XP_002280699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259697 [Vitis vinifera];; (*TAIR) AT5G12260.1 (e_value=4e-150) | Symbols: | BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3966417-3968684 FORWARD LENGTH=624;; (*ITAG) Solyc11g062360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46404974-46410373 transcript_region:SL2.40ch11:46404974..46410373- functional_description:"Sugar transporter superfamily (AHRD V1 **-- A4Q7Q3_MEDTR)"; NbS00051686g0011.1 protein AED:0.31 eAED:0.31 QI:159|0.63|0.83|0.91|1|1|12|374|514; (*GB) gi|359476253|ref|XP_002280119.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CBK1 [Vitis vinifera];; (*SWP) sp|Q6TGC6|CBK1_PNECA (e_value=1e-134) Serine/threonine-protein kinase CBK1 OS=Pneumocystis carinii GN=CBK1 PE=2 SV=1;; (*TAIR) AT4G33080.2 (e_value=0.0) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=507;; (*ITAG) Solyc08g062670.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00041079g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|255575237|ref|XP_002528522.1| (e_value=2e-169) disulfide oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q39242|TRXB2_ARATH (e_value=1e-164) Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2;; (*TAIR) AT2G17420.1 (e_value=4e-166) | Symbols: NTRA, ATNTRA, NTR2 | NADPH-dependent thioredoxin reductase A | chr2:7564357-7566219 FORWARD LENGTH=378;; (*ITAG) Solyc02g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40521256-40525895 transcript_region:SL2.40ch02:40521256..40525895+ go_terms:GO:0004791 functional_description:"Thioredoxin reductase (AHRD V1 **** B9SRA3_RICCO); contains Interpro domain(s) IPR005982 Thioredoxin reductase "; GO:0004791 NbS00051835g0004.1 protein AED:0.09 eAED:0.09 QI:236|0.6|0.5|1|0.4|0.5|6|0|157; (*GB) gi|356532778|ref|XP_003534947.1| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100817458 [Glycine max];; (*TAIR) AT5G20635.1 (e_value=3e-23) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: keratin filament, chloroplast; CONTAINS InterPro DOMAIN/s: Keratin, high sulphur B2 protein (InterPro:IPR002494); Has 6153 Blast hits to 2882 proteins in 265 species: Archae - 6; Bacteria - 47; Metazoa - 4777; Fungi - 68; Plants - 187; Viruses - 30; Other Eukaryotes - 1038 (source: NCBI BLink). | chr5:6979314-6981767 REVERSE LENGTH=251;; (*ITAG) Solyc07g041980.2.1 (e_value=1e-33) genomic_reference:SL2.40ch07 gene_region:52089837-52093988 transcript_region:SL2.40ch07:52089837..52093988- go_terms:GO:0006310,GO:0005576 functional_description:"Seed length and weight protein long form for short seed (AHRD V1 *--- C6L699_ORYSI)"; GO:0006310,GO:0005576 NbS00001218g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|0.33|0.25|4|0|303; (*GB) gi|322422116|gb|ADX01227.1| (e_value=4e-93) putative peroxidase [Cinnamomum micranthum f. kanehirae];; (*SWP) sp|O22862|PER26_ARATH (e_value=6e-93) Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2;; (*TAIR) AT2G43480.1 (e_value=5e-94) | Symbols: | Peroxidase superfamily protein | chr2:18053009-18054350 FORWARD LENGTH=335;; (*ITAG) Solyc08g013930.2.1 (e_value=4e-168) genomic_reference:SL2.40ch08 gene_region:3301724-3306720 transcript_region:SL2.40ch08:3301724..3306720- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase family protein (AHRD V1 **** D7M2G6_ARALY); contains Interpro domain(s) IPR000823 Plant peroxidase "; GO:0004601,GO:0005515 NbS00050703g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.28|0.85|0.66|0.57|7|0|487; (*GB) gi|255556131|ref|XP_002519100.1| (e_value=0.0) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-106) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=3e-155) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc01g109310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88053525-88056027 transcript_region:SL2.40ch01:88053525..88056027- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00050703g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.66|1|0.4|0.66|6|68|415; (*GB) gi|255556131|ref|XP_002519100.1| (e_value=4e-169) multidrug resistance pump, putative [Ricinus communis];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-49) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G47530.1 (e_value=1e-111) | Symbols: | MATE efflux family protein | chr1:17451724-17454110 FORWARD LENGTH=484;; (*ITAG) Solyc01g109320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88057676-88060117 transcript_region:SL2.40ch01:88057676..88060117- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00050703g0009.1 protein AED:0.26 eAED:0.26 QI:200|0.8|0.90|1|0.8|0.81|11|822|491; (*GB) gi|157042741|gb|ABV02022.1| (e_value=0.0) 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate reductase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q94B35|ISPH_ARATH (e_value=0.0) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=ISPH PE=2 SV=1;; (*TAIR) AT4G34350.1 (e_value=0.0) | Symbols: CLB6, ISPH, HDR | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | chr4:16428681-16431038 REVERSE LENGTH=466;; (*ITAG) Solyc01g109300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88049244-88054027 transcript_region:SL2.40ch01:88049244..88054027+ go_terms:GO:0055114 functional_description:"4-hydroxy-3-methylbut-2-enyl diphosphate reductase (AHRD V1 ***- A2TGW4_9LAMI); contains Interpro domain(s) IPR003451 LytB protein "; GO:0055114 NbS00058598g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|0.90|0.83|12|449|544; (*GB) gi|225464551|ref|XP_002272741.1| (e_value=0.0) PREDICTED: prolyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|A7NKX0|SYP_ROSCS (e_value=9e-180) Proline--tRNA ligase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=proS PE=3 SV=1;; (*TAIR) AT5G52520.1 (e_value=0.0) | Symbols: OVA6, PRORS1 | Class II aaRS and biotin synthetases superfamily protein | chr5:21311112-21313875 FORWARD LENGTH=543;; (*ITAG) Solyc01g096870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79627044-79633011 transcript_region:SL2.40ch01:79627044..79633011+ go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q7XZD2_RAPSA); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00058598g0009.1 protein AED:0.94 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|61 NbS00058598g0008.1 protein AED:0.24 eAED:0.24 QI:202|0.75|0.88|1|1|1|9|429|565; (*GB) gi|296085414|emb|CBI29146.3| (e_value=4e-107) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g096890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79639191-79646635 transcript_region:SL2.40ch01:79639191..79646635- functional_description:"Genomic DNA chromosome 5 P1 clone MXI22 (AHRD V1 *-*- Q9FK37_ARATH)"; NbS00029565g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|0|2|0|95; (*GB) gi|62287224|sp|Q67IC5.1|RR7_ASPOF (e_value=6e-41) RecName: Full=30S ribosomal protein S7, chloroplastic;; (*SWP) sp|Q67IC5|RR7_ASPOF (e_value=2e-42) 30S ribosomal protein S7, chloroplastic OS=Asparagus officinalis GN=rps7 PE=3 SV=1;; (*ITAG) ATCG00900.1 (e_value=3e-42) | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e family protein | chrC:97478-97945 REVERSE LENGTH=155;; (*ITAG) Solyc01g007670.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:1893908-1894685 transcript_region:SL2.40ch01:1893908..1894685- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S7 chloroplastic (AHRD V1 ***- D3WBE1_9BORA); contains Interpro domain(s) IPR005717 Ribosomal protein S7, bacterial-type "; GO:0005840,GO:0015935 NbS00029565g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|93280156|gb|ABF06706.1| (e_value=4e-43) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=6e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00035090g0004.1 protein AED:0.38 eAED:0.47 QI:91|1|0.33|1|1|0.66|3|0|124; (*GB) gi|356563942|ref|XP_003550216.1| (e_value=4e-42) PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Glycine max];; (*TAIR) AT4G33060.1 (e_value=5e-36) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr4:15948535-15951954 FORWARD LENGTH=504;; (*ITAG) Solyc08g062700.2.1 (e_value=1e-62) genomic_reference:SL2.40ch08 gene_region:48997752-49017259 transcript_region:SL2.40ch08:48997752..49017259- go_terms:GO:0005634,GO:0006457 functional_description:"Peptidyl prolyl cis trans isomerase-like (AHRD V1 ***- Q5ZB85_ORYSJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005634,GO:0006457 NbS00013897g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|189|472; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=0.0) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-151) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36780.1 (e_value=8e-54) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15417618-15419108 REVERSE LENGTH=496;; (*ITAG) Solyc04g008310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1986217-1987629 transcript_region:SL2.40ch04:1986217..1987629- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q2VA65_SOYBN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00053839g0009.1 protein AED:0.14 eAED:0.15 QI:0|0.25|0|1|0|0|5|0|505; (*GB) gi|255536947|ref|XP_002509540.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q6R2K2|SRF4_ARATH (e_value=7e-33) Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1;; (*TAIR) AT3G01840.1 (e_value=4e-87) | Symbols: | Protein kinase superfamily protein | chr3:296582-298634 REVERSE LENGTH=654;; (*ITAG) Solyc02g094010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49244300-49246380 transcript_region:SL2.40ch02:49244300..49246380- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9LYS5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00053839g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|255536949|ref|XP_002509541.1| (e_value=2e-57) Polcalcin Jun o, putative [Ricinus communis];; (*SWP) sp|Q9SRE6|CML38_ARATH (e_value=3e-46) Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1;; (*TAIR) AT1G76650.3 (e_value=3e-47) | Symbols: CML38 | calmodulin-like 38 | chr1:28766909-28767442 REVERSE LENGTH=177;; (*ITAG) Solyc02g094000.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49243310-49243735 transcript_region:SL2.40ch02:49243310..49243735+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00033466g0004.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|84; (*GB) gi|359492195|ref|XP_003634377.1| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100259103 isoform 2 [Vitis vinifera];; (*TAIR) AT1G30845.1 (e_value=4e-19) | Symbols: | unknown protein; Has 120 Blast hits to 120 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 35; Fungi - 37; Plants - 23; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr1:10979856-10980427 FORWARD LENGTH=118;; (*ITAG) Solyc04g081160.2.1 (e_value=3e-32) genomic_reference:SL2.40ch04 gene_region:62769488-62772286 transcript_region:SL2.40ch04:62769488..62772286+ functional_description:"Cell growth defect factor 2 (AHRD V1 ***- B6T7D5_MAIZE)"; NbS00006215g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|224122614|ref|XP_002318880.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P17407|21KD_DAUCA (e_value=8e-31) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G25250.1 (e_value=9e-37) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12934632-12935231 FORWARD LENGTH=199;; (*ITAG) Solyc03g083660.1.1 (e_value=5e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47154797-47155381 transcript_region:SL2.40ch03:47154797..47155381- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9T3X5_RICCO); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00006215g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|255539735|ref|XP_002510932.1| (e_value=9e-80) 21 kDa protein precursor, putative [Ricinus communis];; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-69) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62350.1 (e_value=1e-68) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25037504-25038112 FORWARD LENGTH=202;; (*ITAG) Solyc06g034370.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:20869116-20869694 transcript_region:SL2.40ch06:20869116..20869694- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9T3X5_RICCO); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00031734g0004.1 protein AED:0.33 eAED:0.40 QI:289|0.33|0.75|1|0.66|0.75|4|127|135; (*GB) gi|388520441|gb|AFK48282.1| (e_value=1e-40) unknown [Lotus japonicus];; (*TAIR) AT3G57280.1 (e_value=1e-38) | Symbols: | Transmembrane proteins 14C | chr3:21193960-21195547 FORWARD LENGTH=226;; (*ITAG) Solyc04g016440.2.1 (e_value=2e-54) genomic_reference:SL2.40ch04 gene_region:7257601-7260651 transcript_region:SL2.40ch04:7257601..7260651- go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 ***- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00005821g0005.1 protein AED:0.57 eAED:0.69 QI:0|0.5|0.2|0.8|0.5|0.4|5|0|184; (*GB) gi|255549373|ref|XP_002515740.1| (e_value=2e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G05270.1 (e_value=2e-50) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00009669g0015.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|1|1|2|0|308; (*GB) gi|162568914|gb|ABY19383.1| (e_value=0.0) putative chlorophyllase [Nicotiana tabacum];; (*SWP) sp|Q9M7I7|CLH2_ARATH (e_value=2e-121) Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1;; (*TAIR) AT5G43860.1 (e_value=2e-122) | Symbols: ATCLH2, CLH2 | chlorophyllase 2 | chr5:17630492-17632184 FORWARD LENGTH=318;; (*ITAG) Solyc06g053980.2.1 (e_value=5e-180) genomic_reference:SL2.40ch06 gene_region:33352567-33354119 transcript_region:SL2.40ch06:33352567..33354119- go_terms:GO:0047746 functional_description:"Chlorophyllase 2 (AHRD V1 **** Q8GTM3_BRAOL); contains Interpro domain(s) IPR010821 Chlorophyllase "; GO:0047746 NbS00009669g0003.1 protein AED:0.16 eAED:0.16 QI:17|1|1|1|1|1|4|379|169; (*GB) gi|225465821|ref|XP_002263648.1| (e_value=1e-62) PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis vinifera];; (*TAIR) AT5G62950.3 (e_value=1e-50) | Symbols: | RNA polymerase II, Rpb4, core protein | chr5:25262355-25263033 REVERSE LENGTH=139;; (*ITAG) Solyc11g007810.1.1 (e_value=3e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2040335-2041393 transcript_region:SL2.40ch11:2040335..2041393+ functional_description:"Calcitonin peptide-receptor component protein (AHRD V1 *--- B6T4L2_MAIZE); contains Interpro domain(s) IPR019000 RNA polymerase III, subunit C17 "; NbS00009669g0013.1 protein AED:0.16 eAED:0.16 QI:155|1|0.5|1|0|0|2|0|112; (*GB) gi|255552055|ref|XP_002517072.1| (e_value=4e-28) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q2V3I3|EPFL4_ARATH (e_value=4e-27) EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana GN=EPFL4 PE=3 SV=1;; (*TAIR) AT4G14723.1 (e_value=3e-28) | Symbols: | BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8440167-8440693 FORWARD LENGTH=109;; (*ITAG) Solyc09g082620.2.1 (e_value=7e-33) genomic_reference:SL2.40ch09 gene_region:63743394-63744775 transcript_region:SL2.40ch09:63743394..63744775+ functional_description:"EPIDERMAL PATTERNING FACTOR-like protein 4 (AHRD V1 *--- EPFL4_ARATH)"; NbS00009669g0021.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|0|0.25|4|0|400; (*GB) gi|255587680|ref|XP_002534354.1| (e_value=3e-76) Transcription factor ICE1, putative [Ricinus communis];; (*SWP) sp|Q8GX46|BH091_ARATH (e_value=3e-55) Transcription factor bHLH91 OS=Arabidopsis thaliana GN=BHLH91 PE=2 SV=1;; (*TAIR) AT2G31210.1 (e_value=2e-56) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:13296655-13298139 FORWARD LENGTH=428;; (*ITAG) Solyc01g081100.1.1 (e_value=7e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72947158-72948750 transcript_region:SL2.40ch01:72947158..72948750- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q84WX1_BRANA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00009669g0018.1 protein AED:0.33 eAED:0.35 QI:203|0.5|0.42|1|0.5|0.28|7|0|432; (*GB) gi|147857219|emb|CAN79216.1| (e_value=9e-111) hypothetical protein VITISV_012793 [Vitis vinifera];; (*TAIR) AT2G47300.2 (e_value=5e-88) | Symbols: | ribonuclease Ps | chr2:19418733-19422076 FORWARD LENGTH=826;; (*ITAG) Solyc11g007800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2031760-2038024 transcript_region:SL2.40ch11:2031760..2038024- go_terms:GO:0006396,GO:0001682 functional_description:"Ribonuclease P/MRP protein subunit (AHRD V1 *--- A8NQR7_COPC7); contains Interpro domain(s) IPR009723 Ribonuclease P/MRP, POP1 "; GO:0006396,GO:0001682 NbS00009669g0019.1 protein AED:0.38 eAED:0.41 QI:0|0|0.2|1|0|0.2|5|328|252; (*GB) gi|302143311|emb|CBI21872.3| (e_value=1e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G47300.3 (e_value=4e-33) | Symbols: | ribonuclease Ps | chr2:19419333-19422076 FORWARD LENGTH=659;; (*ITAG) Solyc11g007800.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2031760-2038024 transcript_region:SL2.40ch11:2031760..2038024- go_terms:GO:0006396,GO:0001682 functional_description:"Ribonuclease P/MRP protein subunit (AHRD V1 *--- A8NQR7_COPC7); contains Interpro domain(s) IPR009723 Ribonuclease P/MRP, POP1 "; GO:0006396,GO:0001682 NbS00009669g0022.1 protein AED:0.64 eAED:1.00 QI:35|0|0|1|1|0.5|2|0|62 NbS00009669g0104.1 protein AED:0.34 eAED:0.42 QI:57|1|0.33|1|0.5|0.33|3|728|100 NbS00009669g0213.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0|2|0|339 NbS00018597g0007.1 protein AED:0.29 eAED:0.29 QI:128|0.33|0.25|1|0|0.25|4|0|473; (*GB) gi|225429736|ref|XP_002282234.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 10 isoform 1 [Vitis vinifera];; (*SWP) sp|Q570B4|KCS10_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2;; (*TAIR) AT2G26250.1 (e_value=0.0) | Symbols: FDH, KCS10 | 3-ketoacyl-CoA synthase 10 | chr2:11170799-11173059 REVERSE LENGTH=550;; (*ITAG) Solyc08g067260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53519628-53523457 transcript_region:SL2.40ch08:53519628..53523457+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00018597g0002.1 protein AED:0.43 eAED:0.52 QI:0|0|0|1|1|1|2|0|117; (*GB) gi|296081744|emb|CBI20749.3| (e_value=6e-47) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g067270.2.1 (e_value=6e-64) genomic_reference:SL2.40ch08 gene_region:53527786-53529732 transcript_region:SL2.40ch08:53527786..53529732- functional_description:"Unknown Protein (AHRD V1)"; NbS00058419g0002.1 protein AED:0.12 eAED:0.12 QI:198|0|0|0.5|1|1|2|0|142; (*ITAG) Solyc01g102460.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:83021841-83022548 transcript_region:SL2.40ch01:83021841..83022548- functional_description:"Unknown Protein (AHRD V1)"; NbS00040007g0006.1 protein AED:0.10 eAED:0.10 QI:17|0.75|0.77|1|1|1|9|0|722; (*GB) gi|225464805|ref|XP_002268635.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At4g15080-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L5Y5|ZDH17_ARATH (e_value=0.0) Probable S-acyltransferase At4g15080 OS=Arabidopsis thaliana GN=At4g15080 PE=1 SV=1;; (*TAIR) AT4G15080.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr4:8609085-8612229 REVERSE LENGTH=718;; (*ITAG) Solyc05g016030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13610807-13620126 transcript_region:SL2.40ch05:13610807..13620126+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C1GFP3_PARBD); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00042717g0013.1 protein AED:0.05 eAED:0.09 QI:0|0.5|0|1|1|1|3|0|204; (*GB) gi|225462624|ref|XP_002264437.1| (e_value=3e-80) PREDICTED: probable glutathione S-transferase [Vitis vinifera];; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=5e-80) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=3e-75) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc12g011300.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4153362-4154489 transcript_region:SL2.40ch12:4153362..4154489+ functional_description:"Glutathione transferase (AHRD V1 ***- O49821_CARPA); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; NbS00042717g0003.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|1|1|4|0|477; (*GB) gi|255555517|ref|XP_002518795.1| (e_value=0.0) cationic amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9SHH0|CAAT8_ARATH (e_value=0.0) Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1;; (*TAIR) AT1G17120.1 (e_value=0.0) | Symbols: CAT8 | cationic amino acid transporter 8 | chr1:5851964-5853736 FORWARD LENGTH=590;; (*ITAG) Solyc12g011370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4203735-4205588 transcript_region:SL2.40ch12:4203735..4205588- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C2SWS0_BACCE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00042717g0004.1 protein AED:0.10 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|337; (*GB) gi|296086776|emb|CBI32925.3| (e_value=3e-105) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LE98|ICR1_ARATH (e_value=3e-67) Interactor of constitutive active ROPs 1 OS=Arabidopsis thaliana GN=ICR1 PE=1 SV=1;; (*TAIR) AT1G17140.2 (e_value=2e-68) | Symbols: ICR1, RIP1 | interactor of constitutive active rops 1 | chr1:5856740-5857861 REVERSE LENGTH=344;; (*ITAG) Solyc12g011360.1.1 (e_value=8e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4201254-4202360 transcript_region:SL2.40ch12:4201254..4202360+ functional_description:"Interactor of constitutive active ROPs 1 (AHRD V1 ***- ICR1_ARATH)"; NbS00042717g0010.1 protein AED:0.32 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|68 NbS00042717g0001.1 protein AED:0.38 eAED:0.44 QI:0|0|0|1|1|1|3|0|181 NbS00048554g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|255538892|ref|XP_002510511.1| (e_value=1e-60) Auxin-induced protein 6B, putative [Ricinus communis];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=4e-16) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT1G75590.1 (e_value=2e-50) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28383250-28383714 REVERSE LENGTH=154;; (*ITAG) Solyc04g081250.1.1 (e_value=7e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:62854012-62854461 transcript_region:SL2.40ch04:62854012..62854461+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *-*- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00048554g0011.1 protein AED:0.03 eAED:0.03 QI:263|0.85|0.37|1|0.71|0.62|8|0|1075; (*GB) gi|147790037|emb|CAN60525.1| (e_value=0.0) hypothetical protein VITISV_000522 [Vitis vinifera];; (*SWP) sp|Q9C698|FPP6_ARATH (e_value=0.0) Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1;; (*TAIR) AT1G47900.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF869) | chr1:17647340-17651035 REVERSE LENGTH=1052;; (*ITAG) Solyc04g081260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62875381-62880736 transcript_region:SL2.40ch04:62875381..62880736+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00007509g0001.1 protein AED:0.04 eAED:0.14 QI:0|0|0.5|1|0|0.5|2|498|363; (*GB) gi|225430388|ref|XP_002285361.1| (e_value=2e-102) PREDICTED: uncharacterized protein LOC100262872 [Vitis vinifera];; (*TAIR) AT5G11000.1 (e_value=3e-78) | Symbols: | Plant protein of unknown function (DUF868) | chr5:3479166-3480335 REVERSE LENGTH=389;; (*ITAG) Solyc08g028780.1.1 (e_value=2e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:20863210-20864229 transcript_region:SL2.40ch08:20863210..20864229+ functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00058263g0004.1 protein AED:0.17 eAED:0.17 QI:296|0.66|0.75|1|0.33|0.25|4|253|376; (*GB) gi|359482886|ref|XP_002277925.2| (e_value=2e-161) PREDICTED: uncharacterized protein LOC100241183 [Vitis vinifera];; (*TAIR) AT3G16490.1 (e_value=2e-90) | Symbols: IQD26 | IQ-domain 26 | chr3:5603962-5605489 REVERSE LENGTH=389;; (*ITAG) Solyc06g066430.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38090484-38092311 transcript_region:SL2.40ch06:38090484..38092311- go_terms:GO:0005516 functional_description:"Calmodulin-binding family protein (AHRD V1 **-* Q9ZU28_ARATH); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00033231g0001.1 protein AED:0.07 eAED:0.12 QI:412|0.5|0.8|1|0.75|0.6|5|254|213; (*GB) gi|359478800|ref|XP_002283663.2| (e_value=7e-45) PREDICTED: uncharacterized protein LOC100258776 [Vitis vinifera];; (*TAIR) AT1G55340.1 (e_value=1e-42) | Symbols: | Protein of unknown function (DUF1639) | chr1:20652605-20653469 FORWARD LENGTH=205;; (*ITAG) Solyc01g005580.2.1 (e_value=5e-66) genomic_reference:SL2.40ch01 gene_region:406975-409234 transcript_region:SL2.40ch01:406975..409234- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00004650g0003.1 protein AED:0.21 eAED:0.28 QI:0|0|0|1|1|1|2|0|272; (*GB) gi|224096333|ref|XP_002310605.1| (e_value=1e-95) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=3e-38) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT2G23180.1 (e_value=2e-78) | Symbols: CYP96A1 | cytochrome P450, family 96, subfamily A, polypeptide 1 | chr2:9874953-9876503 FORWARD LENGTH=516;; (*ITAG) Solyc04g051730.1.1 (e_value=1e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50189096-50190628 transcript_region:SL2.40ch04:50189096..50190628+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032162g0004.1 protein AED:0.13 eAED:0.13 QI:327|1|1|1|1|1|2|771|188; (*GB) gi|358248678|ref|NP_001239666.1| (e_value=3e-46) CASP-like protein 6 [Glycine max];; (*SWP) sp|C6TBD0|CSPL6_SOYBN (e_value=8e-48) CASP-like protein 6 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G15630.1 (e_value=2e-36) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:8917527-8918683 FORWARD LENGTH=190;; (*ITAG) Solyc01g067330.2.1 (e_value=7e-76) genomic_reference:SL2.40ch01 gene_region:68195803-68198270 transcript_region:SL2.40ch01:68195803..68198270+ go_terms:GO:0005515 functional_description:"UPF0497 membrane protein 4 (AHRD V1 ***- U4974_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; GO:0005515 NbS00014661g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.73|0.70|0.96|0.84|0.88|27|0|1484; (*GB) gi|375273923|gb|AFA43815.1| (e_value=0.0) ABCG/PDR subfamily ABC transporter [Petunia axillaris];; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc08g067620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53842288-53848833 transcript_region:SL2.40ch08:53842288..53848833+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00001838g0001.1 protein AED:0.24 eAED:0.25 QI:0|0.85|0.75|1|1|1|8|387|251; (*GB) gi|298359665|gb|ADI77438.1| (e_value=6e-153) Why2 protein [Solanum tuberosum];; (*TAIR) AT1G71260.1 (e_value=2e-92) | Symbols: ATWHY2, WHY2 | WHIRLY 2 | chr1:26861849-26863391 REVERSE LENGTH=238;; (*ITAG) Solyc11g044750.1.1 (e_value=1e-151) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36051926-36054835 transcript_region:SL2.40ch11:36051926..36054835- go_terms:GO:0006355 functional_description:"DNA-binding protein p24 (AHRD V1 **-- Q9LL85_SOLTU); contains Interpro domain(s) IPR013742 Plant transcription factor "; GO:0006355 NbS00010616g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|224092194|ref|XP_002309503.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT2G26110.1 (e_value=2e-29) | Symbols: | Protein of unknown function (DUF761) | chr2:11120869-11121798 FORWARD LENGTH=309;; (*ITAG) Solyc08g065150.1.1 (e_value=1e-157) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:50113091-50114122 transcript_region:SL2.40ch08:50113091..50114122- functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 *--- Q9FGR3_ARATH)"; NbS00010616g0006.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.71|0.85|0.83|0.71|7|352|217; (*GB) gi|297742438|emb|CBI34587.3| (e_value=2e-53) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G26665.1 (e_value=2e-51) | Symbols: | Mediator complex, subunit Med10 | chr1:9214510-9215426 FORWARD LENGTH=189;; (*ITAG) Solyc08g065160.2.1 (e_value=2e-69) genomic_reference:SL2.40ch08 gene_region:50131811-50135402 transcript_region:SL2.40ch08:50131811..50135402- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 10 (AHRD V1 *-*- C1BXR0_ESOLU); contains Interpro domain(s) IPR019145 Mediator complex, subunit Med10 "; GO:0016592 NbS00019887g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|88 NbS00022307g0014.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|245; (*GB) gi|169667043|gb|ACA64094.1| (e_value=5e-70) WOX2 [Petunia x hybrida];; (*SWP) sp|Q6X7K1|WOX2_ARATH (e_value=9e-38) WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana GN=WOX2 PE=2 SV=1;; (*TAIR) AT5G59340.1 (e_value=7e-39) | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933408-23934627 REVERSE LENGTH=260;; (*ITAG) Solyc06g076000.1.1 (e_value=9e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43575589-43577001 transcript_region:SL2.40ch06:43575589..43577001+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00022307g0019.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|0|138; (*GB) gi|224059516|ref|XP_002299885.1| (e_value=5e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G07645.1 (e_value=3e-73) | Symbols: ATDSI-1VOC, DSI-1VOC | dessication-induced 1VOC superfamily protein | chr1:2367612-2368349 REVERSE LENGTH=137;; (*ITAG) Solyc06g075990.2.1 (e_value=3e-92) genomic_reference:SL2.40ch06 gene_region:43569520-43570458 transcript_region:SL2.40ch06:43569520..43570458+ go_terms:GO:0003824 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 ***- A1WPN3_VEREI); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0003824 NbS00022307g0013.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0.66|0.5|4|0|536; (*GB) gi|108864705|gb|ABG22608.1| (e_value=0.0) Heat shock cognate 70 kDa protein, putative, expressed [Oryza sativa Japonica Group];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT5G02500.1 (e_value=0.0) | Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651;; (*ITAG) Solyc11g066060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48824058-48826931 transcript_region:SL2.40ch11:48824058..48826931+ go_terms:GO:0005524 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00007020g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.33|0.25|1|0.33|0.5|4|0|301; (*GB) gi|359473025|ref|XP_003631233.1| (e_value=9e-93) PREDICTED: uncharacterized protein LOC100266416 [Vitis vinifera];; (*TAIR) AT1G13470.1 (e_value=1e-70) | Symbols: | Protein of unknown function (DUF1262) | chr1:4620322-4621542 REVERSE LENGTH=379;; (*ITAG) Solyc05g010460.2.1 (e_value=2e-116) genomic_reference:SL2.40ch05 gene_region:4703441-4705121 transcript_region:SL2.40ch05:4703441..4705121- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00058760g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|62; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=5e-17) hypothetical protein [Nicotiana tabacum]; NbS00058760g0002.1 protein AED:0.06 eAED:0.11 QI:0|0|0|1|0|0|2|0|97; (*ITAG) Solyc06g060210.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34564883-34565494 transcript_region:SL2.40ch06:34564883..34565494+ go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005525,GO:0003924 NbS00033365g0003.1 protein AED:0.06 eAED:0.06 QI:103|1|1|1|1|1|6|399|492; (*GB) gi|224127344|ref|XP_002329254.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O67409|TRPB2_AQUAE (e_value=0.0) Tryptophan synthase beta chain 2 OS=Aquifex aeolicus (strain VF5) GN=trpB2 PE=3 SV=1;; (*TAIR) AT5G38530.1 (e_value=0.0) | Symbols: TSBtype2 | tryptophan synthase beta type 2 | chr5:15424097-15426294 FORWARD LENGTH=506;; (*ITAG) Solyc12g096190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63553620-63556459 transcript_region:SL2.40ch12:63553620..63556459+ go_terms:GO:0008152,GO:0000162 functional_description:"Tryptophan synthase beta chain (AHRD V1 ***- Q9FFW8_ARATH); contains Interpro domain(s) IPR006316 Tryptophan synthase, beta chain-like "; GO:0008152,GO:0000162 NbS00010054g0006.1 protein AED:0.33 eAED:0.39 QI:0|0.25|0.2|0.8|0.5|0.8|5|0|143; (*GB) gi|255549922|ref|XP_002516012.1| (e_value=3e-71) Cytochrome c-type biogenesis protein cycL precursor, putative [Ricinus communis];; (*TAIR) AT1G15220.2 (e_value=5e-62) | Symbols: ATCCMH, CCMH | cytochrome c biogenesis protein family | chr1:5240471-5241117 REVERSE LENGTH=159;; (*ITAG) Solyc03g120610.2.1 (e_value=3e-80) genomic_reference:SL2.40ch03 gene_region:63010744-63013298 transcript_region:SL2.40ch03:63010744..63013298- go_terms:GO:0005515,GO:0016491 functional_description:"Cytochrome c biogenesis protein-like (AHRD V1 ***- Q6K7S7_ORYSJ); contains Interpro domain(s) IPR005616 Cytochrome C biogenesis protein CcmH "; GO:0005515,GO:0016491 NbS00005483g0102.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|467 NbS00005483g0110.1 protein AED:0.30 eAED:0.31 QI:65|0.77|0.7|0.9|0.66|0.6|10|0|296 NbS00000575g0014.1 protein AED:0.27 eAED:0.27 QI:153|1|1|1|0|0.5|2|209|78; (*GB) gi|282848242|gb|ADB02902.1| (e_value=3e-36) mitochondrial import inner membrane translocase subunit Tim8/small zinc finger-like protein [Jatropha curcas];; (*SWP) sp|Q9XGY4|TIM8_ARATH (e_value=5e-29) Mitochondrial import inner membrane translocase subunit Tim8 OS=Arabidopsis thaliana GN=TIM8 PE=2 SV=1;; (*TAIR) AT5G50810.1 (e_value=4e-30) | Symbols: TIM8 | translocase inner membrane subunit 8 | chr5:20675875-20676505 REVERSE LENGTH=77;; (*ITAG) Solyc06g072600.2.1 (e_value=4e-41) genomic_reference:SL2.40ch06 gene_region:41162164-41163995 transcript_region:SL2.40ch06:41162164..41163995+ go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim8 (AHRD V1 ***- B6SQH6_MAIZE); contains Interpro domain(s) IPR004217 Mitochondrial inner membrane translocase complex, Tim8/9/10/13-zinc finger-like "; GO:0015450 NbS00000575g0010.1 protein AED:0.10 eAED:0.10 QI:185|1|1|1|1|1|3|251|246; (*GB) gi|225425172|ref|XP_002264588.1| (e_value=2e-87) PREDICTED: NAC domain-containing protein 29 isoform 1 [Vitis vinifera];; (*SWP) sp|Q52QH4|NAC68_ORYSJ (e_value=5e-43) NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=5e-72) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc03g097650.2.1 (e_value=7e-121) genomic_reference:SL2.40ch03 gene_region:53428478-53430021 transcript_region:SL2.40ch03:53428478..53430021+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000575g0013.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.4|0.8|0.75|0.8|5|0|441; (*GB) gi|225456422|ref|XP_002284252.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At3g26935 isoform 1 [Vitis vinifera];; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=0.0) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc03g097630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53410692-53417468 transcript_region:SL2.40ch03:53410692..53417468+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase-like protein (AHRD V1 *-** C6YXK4_ORYSJ); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00011055g0002.1 protein AED:0.16 eAED:0.16 QI:157|0|0.5|1|0|0.5|2|163|229; (*GB) gi|225456209|ref|XP_002282887.1| (e_value=6e-70) PREDICTED: wall-associated receptor kinase 2-like isoform 3 [Vitis vinifera];; (*SWP) sp|Q9LMN7|WAK5_ARATH (e_value=5e-57) Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1;; (*TAIR) AT1G21230.1 (e_value=4e-58) | Symbols: WAK5 | wall associated kinase 5 | chr1:7429980-7432346 FORWARD LENGTH=733;; (*ITAG) Solyc09g014710.2.1 (e_value=2e-124) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00011055g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|120|798; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=0.0) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=0.0) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=0.0) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014710.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00011055g0014.1 protein AED:0.15 eAED:0.15 QI:96|0.6|0.5|1|0.4|0.33|6|0|795; (*GB) gi|359492355|ref|XP_002284688.2| (e_value=0.0) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMP1|WAK2_ARATH (e_value=9e-143) Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1;; (*TAIR) AT1G21270.1 (e_value=7e-144) | Symbols: WAK2 | wall-associated kinase 2 | chr1:7444997-7447345 FORWARD LENGTH=732;; (*ITAG) Solyc09g014720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6773605-6777110 transcript_region:SL2.40ch09:6773605..6777110- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00022626g0004.1 protein AED:0.15 eAED:0.19 QI:0|0.33|0|0.5|1|1|4|0|268; (*GB) gi|147818973|emb|CAN67117.1| (e_value=4e-25) hypothetical protein VITISV_026466 [Vitis vinifera];; (*SWP) sp|Q9T072|BH025_ARATH (e_value=6e-23) Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2;; (*TAIR) AT4G37850.1 (e_value=4e-24) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328;; (*ITAG) Solyc02g091810.1.1 (e_value=9e-53) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:47604420-47608160 transcript_region:SL2.40ch02:47604420..47608160+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00021536g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0|2|0|188; (*GB) gi|224053765|ref|XP_002297968.1| (e_value=1e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT3G61920.1 (e_value=8e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22932638-22933201 REVERSE LENGTH=187;; (*ITAG) Solyc08g008360.2.1 (e_value=9e-100) genomic_reference:SL2.40ch08 gene_region:2784028-2785741 transcript_region:SL2.40ch08:2784028..2785741- functional_description:"Unknown Protein (AHRD V1)"; NbS00021536g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.71|1|0.5|0.42|7|216|308; (*GB) gi|363806694|ref|NP_001242010.1| (e_value=1e-119) uncharacterized protein LOC100796450 [Glycine max];; (*SWP) sp|P37707|B2_DAUCA (e_value=8e-103) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G42050.1 (e_value=2e-106) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:16815630-16816932 FORWARD LENGTH=349;; (*ITAG) Solyc08g008370.2.1 (e_value=3e-144) genomic_reference:SL2.40ch08 gene_region:2794832-2797936 transcript_region:SL2.40ch08:2794832..2797936- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00005115g0001.1 protein AED:0.00 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|142; (*ITAG) Solyc01g016970.1.1 (e_value=4e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:23211802-23212188 transcript_region:SL2.40ch01:23211802..23212188+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005115g0003.1 protein AED:0.00 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|125; (*ITAG) Solyc09g082930.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64012666-64012998 transcript_region:SL2.40ch09:64012666..64012998- functional_description:"Unknown Protein (AHRD V1)"; NbS00005115g0012.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0.2|0.6|0.5|0.6|5|0|119; (*GB) gi|255552003|ref|XP_002517046.1| (e_value=6e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G22942.1 (e_value=6e-26) | Symbols: AGG2 | G-protein gamma subunit 2 | chr3:8134475-8135667 FORWARD LENGTH=100;; (*ITAG) Solyc09g082940.2.1 (e_value=4e-53) genomic_reference:SL2.40ch09 gene_region:64028264-64033800 transcript_region:SL2.40ch09:64028264..64033800+ go_terms:GO:0005515 functional_description:"G protein gamma subunit 1 (AHRD V1 ***- B8AN27_ORYSI)"; GO:0005515 NbS00005115g0013.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|89; (*ITAG) Solyc09g072960.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:61130227-61131414 transcript_region:SL2.40ch09:61130227..61131414- functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00020042g0001.1 protein AED:0.26 eAED:0.34 QI:0|0|0|1|1|1|2|0|221; (*GB) gi|225469774|ref|XP_002274117.1| (e_value=8e-103) PREDICTED: probable mitochondrial 2-oxoglutarate/malate carrier protein [Vitis vinifera];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=2e-42) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT2G22500.1 (e_value=4e-97) | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein 5 | chr2:9563531-9564472 REVERSE LENGTH=313;; (*ITAG) Solyc05g051400.2.1 (e_value=7e-116) genomic_reference:SL2.40ch05 gene_region:60846143-60847396 transcript_region:SL2.40ch05:60846143..60847396+ go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** B6TRY7_MAIZE); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00016051g0102.1 protein AED:0.01 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|540 NbS00016051g0112.1 protein AED:0.22 eAED:0.22 QI:66|1|1|1|1|1|2|250|316 NbS00030302g0001.1 protein AED:0.03 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|412; (*GB) gi|224107110|ref|XP_002314378.1| (e_value=7e-75) predicted protein [Populus trichocarpa];; (*TAIR) AT3G06868.1 (e_value=4e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:2167872-2168981 FORWARD LENGTH=369;; (*ITAG) Solyc12g099450.1.1 (e_value=4e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64942526-64944096 transcript_region:SL2.40ch12:64942526..64944096+ functional_description:"Genomic DNA chromosome 5 TAC clone K20J1 (AHRD V1 *-*- Q9FH24_ARATH)"; NbS00037620g0014.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|0|0.5|2|0|124; (*GB) gi|147839187|emb|CAN72374.1| (e_value=8e-25) hypothetical protein VITISV_019596 [Vitis vinifera];; (*SWP) sp|Q3A949|MURA2_CARHZ (e_value=4e-21) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=murA2 PE=3 SV=1;; (*ITAG) Solyc07g062550.2.1 (e_value=2e-35) genomic_reference:SL2.40ch07 gene_region:62463024-62467530 transcript_region:SL2.40ch07:62463024..62467530- go_terms:GO:0019277,GO:0016765,GO:0003824 functional_description:"UDP-N-acetylglucosamine 1-carboxyvinyltransferase (AHRD V1 ***- B1XJX8_SYNP2); contains Interpro domain(s) IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase "; GO:0019277,GO:0016765,GO:0003824 NbS00037620g0013.1 protein AED:0.46 eAED:0.66 QI:0|0|0|0.5|1|1|4|0|112; (*GB) gi|147839187|emb|CAN72374.1| (e_value=4e-35) hypothetical protein VITISV_019596 [Vitis vinifera];; (*SWP) sp|Q7VAC5|MURA2_PROMA (e_value=7e-22) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=murA2 PE=3 SV=1;; (*ITAG) Solyc07g062550.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:62463024-62467530 transcript_region:SL2.40ch07:62463024..62467530- go_terms:GO:0019277,GO:0016765,GO:0003824 functional_description:"UDP-N-acetylglucosamine 1-carboxyvinyltransferase (AHRD V1 ***- B1XJX8_SYNP2); contains Interpro domain(s) IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase "; GO:0019277,GO:0016765,GO:0003824 NbS00037620g0004.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0.53|0.92|1|1|13|424|931; (*GB) gi|3777449|emb|CAA09807.1| (e_value=0.0) ppc2 [Solanum tuberosum];; (*SWP) sp|P27154|CAPP_TOBAC (e_value=0.0) Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1;; (*TAIR) AT3G14940.1 (e_value=0.0) | Symbols: ATPPC3, PPC3 | phosphoenolpyruvate carboxylase 3 | chr3:5025584-5029476 FORWARD LENGTH=968;; (*ITAG) Solyc10g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1686062-1694134 transcript_region:SL2.40ch10:1686062..1694134- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 ***- A6YM32_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00037620g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.88|0.8|1|1|1|10|0|582; (*GB) gi|225461656|ref|XP_002285438.1| (e_value=0.0) PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9FZ49|ALG9_ARATH (e_value=0.0) Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase OS=Arabidopsis thaliana GN=ALG9 PE=1 SV=1;; (*TAIR) AT1G16900.1 (e_value=0.0) | Symbols: | Alg9-like mannosyltransferase family | chr1:5779262-5782303 REVERSE LENGTH=570;; (*ITAG) Solyc07g062540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62457887-62462873 transcript_region:SL2.40ch07:62457887..62462873+ go_terms:GO:0004169,GO:0005529 functional_description:"Alpha-1 2-mannosyltransferase (AHRD V1 **-* C5G7Q7_AJEDR); contains Interpro domain(s) IPR005599 Alg9-like mannosyltransferase "; GO:0004169,GO:0005529 NbS00008596g0012.1 protein AED:0.35 eAED:0.35 QI:146|1|1|1|0.66|0.25|4|0|144; (*GB) gi|225431916|ref|XP_002276905.1| (e_value=4e-50) PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 3 [Vitis vinifera];; (*SWP) sp|Q54I18|SMEK_DICDI (e_value=5e-25) Suppressor of Mek1 OS=Dictyostelium discoideum GN=smkA PE=1 SV=1;; (*TAIR) AT3G06670.2 (e_value=5e-45) | Symbols: | binding | chr3:2105908-2113136 REVERSE LENGTH=886;; (*ITAG) Solyc12g099320.1.1 (e_value=4e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64843563-64859274 transcript_region:SL2.40ch12:64843563..64859274- go_terms:GO:0005488 functional_description:"Serine/threonine-protein phosphatase 4 regulatory subunit 3 (AHRD V1 **-- PP4R3_DANRE); contains Interpro domain(s) IPR006887 Protein of unknown function DUF625 "; GO:0005488 NbS00008596g0013.1 protein AED:0.36 eAED:0.51 QI:0|0.81|0.5|1|0.81|0.83|12|0|529; (*GB) gi|225439303|ref|XP_002267555.1| (e_value=3e-158) PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=2e-149) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.1 (e_value=2e-150) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116;; (*ITAG) Solyc10g081610.1.1 (e_value=2e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00008596g0015.1 protein AED:0.18 eAED:0.18 QI:116|1|0.8|1|0.75|0.8|5|0|681; (*GB) gi|297737957|emb|CBI27158.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0C8Q4|Y4990_ARATH (e_value=0.0) Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1;; (*TAIR) AT4G19900.1 (e_value=0.0) | Symbols: | alpha 1,4-glycosyltransferase family protein | chr4:10789144-10791433 REVERSE LENGTH=644;; (*ITAG) Solyc02g068790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33279149-33285537 transcript_region:SL2.40ch02:33279149..33285537+ go_terms:GO:0005795 functional_description:"Lactosylceramide 4-alpha-galactosyltransferase (AHRD V1 *-*- A4GAT_MOUSE); contains Interpro domain(s) IPR007652 Alpha 1,4-glycosyltransferase conserved region "; GO:0005795 NbS00008596g0014.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.8|0.5|0.4|5|0|174; (*ITAG) Solyc07g049540.1.1 (e_value=5e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57160827-57162596 transcript_region:SL2.40ch07:57160827..57162596- go_terms:GO:0005576 functional_description:"Expansin-b5 (AHRD V1 ***- D7LRS2_ARALY); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00008922g0003.1 protein AED:0.07 eAED:0.07 QI:59|1|1|1|0|0|2|69|167; (*GB) gi|359483726|ref|XP_002266522.2| (e_value=1e-64) PREDICTED: dof zinc finger protein DOF1.5-like [Vitis vinifera];; (*SWP) sp|O22967|DOF23_ARATH (e_value=6e-51) Dof zinc finger protein DOF2.3 OS=Arabidopsis thaliana GN=DOF2.3 PE=2 SV=1;; (*TAIR) AT2G34140.1 (e_value=5e-52) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr2:14414188-14414700 REVERSE LENGTH=170;; (*ITAG) Solyc02g076850.1.1 (e_value=5e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36554226-36554717 transcript_region:SL2.40ch02:36554226..36554717+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 *-*- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00029676g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|233; (*GB) gi|296086302|emb|CBI31743.3| (e_value=1e-62) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G01130.1 (e_value=3e-19) | Symbols: | Protein of unknown function (DUF674) | chr5:47642-49174 FORWARD LENGTH=452;; (*ITAG) Solyc06g069800.1.1 (e_value=7e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39851933-39852693 transcript_region:SL2.40ch06:39851933..39852693- go_terms:GO:0009055 functional_description:"Unknown Protein (AHRD V1)"; GO:0009055 NbS00001877g0007.1 protein AED:0.27 eAED:0.27 QI:267|0.8|0.83|1|0.6|0.33|6|491|419; (*GB) gi|255567234|ref|XP_002524598.1| (e_value=1e-119) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SSE5|COL9_ARATH (e_value=5e-82) Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1;; (*TAIR) AT3G07650.4 (e_value=4e-83) | Symbols: COL9 | CONSTANS-like 9 | chr3:2442494-2443901 FORWARD LENGTH=372;; (*ITAG) Solyc12g006240.1.1 (e_value=4e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:756961-761422 transcript_region:SL2.40ch12:756961..761422- go_terms:GO:0005515,GO:0003700 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 *--- D0EP07_SOYBN); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005515,GO:0003700 NbS00001877g0005.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|165; (*GB) gi|321149997|gb|ADW66146.1| (e_value=3e-73) RING-H2 zinc finger protein [Solanum nigrum];; (*SWP) sp|Q9ZU51|RHA2B_ARATH (e_value=4e-13) Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2;; (*TAIR) AT2G04240.2 (e_value=1e-44) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162;; (*ITAG) Solyc07g045190.1.1 (e_value=1e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55644301-55644666 transcript_region:SL2.40ch07:55644301..55644666+ go_terms:GO:0005515 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q30D22_PONTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00023779g0005.1 protein AED:0.01 eAED:0.01 QI:222|1|1|1|1|1|2|163|317; (*GB) gi|255569410|ref|XP_002525672.1| (e_value=3e-139) Peroxidase 44 precursor, putative [Ricinus communis];; (*SWP) sp|Q93V93|PER44_ARATH (e_value=4e-125) Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1;; (*TAIR) AT4G26010.1 (e_value=3e-126) | Symbols: | Peroxidase superfamily protein | chr4:13200653-13201688 FORWARD LENGTH=310;; (*ITAG) Solyc09g072700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60809802-60811782 transcript_region:SL2.40ch09:60809802..60811782- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase 57 (AHRD V1 **** D7LXN0_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00006301g0001.1 protein AED:0.08 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|753; (*GB) gi|255560453|ref|XP_002521241.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|O04590|PPR88_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1;; (*TAIR) AT1G62260.1 (e_value=0.0) | Symbols: MEF9 | mitochondrial editing factor 9 | chr1:22997826-22999796 REVERSE LENGTH=656;; (*ITAG) Solyc05g006460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1079053-1081504 transcript_region:SL2.40ch05:1079053..1081504- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006301g0009.1 protein AED:0.32 eAED:0.43 QI:0|0.5|0.33|1|0.5|0.66|3|0|182; (*GB) gi|255579911|ref|XP_002530791.1| (e_value=2e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G17930.1 (e_value=6e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3007 (InterPro:IPR021562); Has 236 Blast hits to 236 proteins in 83 species: Archae - 0; Bacteria - 117; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:6142307-6143246 REVERSE LENGTH=190;; (*ITAG) Solyc05g006440.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:1069478-1072256 transcript_region:SL2.40ch05:1069478..1072256- functional_description:"Homology to unknown gene (AHRD V1 *--- Q00X05_OSTTA)"; NbS00006301g0007.1 protein AED:0.32 eAED:0.62 QI:144|0.5|0.66|1|0.5|0.33|3|167|40 NbS00006301g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|823; (*GB) gi|255558350|ref|XP_002520202.1| (e_value=0.0) actin binding protein, putative [Ricinus communis];; (*SWP) sp|O04532|FH8_ARATH (e_value=2e-170) Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1;; (*TAIR) AT1G70140.1 (e_value=2e-171) | Symbols: ATFH8, FH8 | formin 8 | chr1:26412688-26415048 REVERSE LENGTH=760;; (*ITAG) Solyc05g006430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1066262-1068706 transcript_region:SL2.40ch05:1066262..1068706+ go_terms:GO:0005522,GO:0051015 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0005522,GO:0051015 NbS00002485g0006.1 protein AED:0.19 eAED:0.20 QI:119|0.6|0.83|1|0.8|0.83|6|367|273; (*GB) gi|60265616|gb|AAX15955.1| (e_value=2e-179) cinnamyl alcohol dehydrogenase 1 [Nicotiana tabacum];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=4e-46) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT5G19440.1 (e_value=2e-132) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326;; (*ITAG) Solyc01g008550.2.1 (e_value=4e-167) genomic_reference:SL2.40ch01 gene_region:2646612-2650332 transcript_region:SL2.40ch01:2646612..2650332- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- B9HNY0_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00028374g0004.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|1|1|2|0|85; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-26) hypothetical protein [Nicotiana tabacum]; NbS00028374g0003.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|0|1|0|111; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-55) hypothetical protein [Nicotiana tabacum]; NbS00013803g0002.1 protein AED:0.09 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|324; (*GB) gi|225436331|ref|XP_002268230.1| (e_value=2e-146) PREDICTED: uncharacterized protein LOC100255180 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=2e-103) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00034120g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0|1|0.66|0.75|4|0|260; (*GB) gi|388513173|gb|AFK44648.1| (e_value=8e-116) unknown [Medicago truncatula];; (*SWP) sp|P34913|HYES_HUMAN (e_value=1e-23) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT3G51000.1 (e_value=1e-43) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=2e-129) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00034120g0013.1 protein AED:0.29 eAED:0.29 QI:0|1|0.66|1|0.2|0.5|6|537|371; (*GB) gi|356548747|ref|XP_003542761.1| (e_value=2e-164) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140-like [Glycine max];; (*SWP) sp|C0LGG8|Y5343_ARATH (e_value=1e-93) Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1;; (*TAIR) AT3G09010.1 (e_value=4e-134) | Symbols: | Protein kinase superfamily protein | chr3:2750285-2752086 FORWARD LENGTH=393;; (*ITAG) Solyc03g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1082967-1089867 transcript_region:SL2.40ch03:1082967..1089867+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00034120g0009.1 protein AED:0.18 eAED:0.18 QI:24|1|0.66|1|1|1|3|228|296; (*GB) gi|359496589|ref|XP_003635272.1| (e_value=6e-63) PREDICTED: clathrin light chain 1-like [Vitis vinifera];; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=3e-50) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=2e-51) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc03g006510.2.1 (e_value=1e-83) genomic_reference:SL2.40ch03 gene_region:1090410-1093485 transcript_region:SL2.40ch03:1090410..1093485- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00018996g0006.1 protein AED:0.36 eAED:0.37 QI:18|0.75|0.77|1|0.75|0.66|9|0|497; (*GB) gi|224128948|ref|XP_002329006.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16520.1 (e_value=1e-178) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbS00025733g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.75|0.8|1|0.75|1|5|304|489; (*GB) gi|224138160|ref|XP_002326533.1| (e_value=2e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5AHI7|NOP12_CANAL (e_value=4e-25) Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NOP12 PE=3 SV=1;; (*TAIR) AT5G46840.1 (e_value=8e-103) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:19005651-19007609 FORWARD LENGTH=501;; (*ITAG) Solyc08g076660.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57760324-57765207 transcript_region:SL2.40ch08:57760324..57765207+ go_terms:GO:0003676,GO:0000166 functional_description:"Nucleolar protein 12 (AHRD V1 *--- C5M6T4_CANTT); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00027870g0006.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|0|1|2|0|74; (*ITAG) Solyc08g044360.1.1 (e_value=8e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:31520355-31531006 transcript_region:SL2.40ch08:31520355..31531006+ go_terms:GO:0005488 functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ)"; GO:0005488 NbS00046283g0003.1 protein AED:0.11 eAED:0.14 QI:247|0.4|0.33|1|0.8|0.66|6|0|313; (*GB) gi|359497085|ref|XP_002269005.2| (e_value=4e-99) PREDICTED: uncharacterized protein LOC100244841 [Vitis vinifera];; (*TAIR) AT3G47160.1 (e_value=3e-77) | Symbols: | RING/U-box superfamily protein | chr3:17360238-17361879 REVERSE LENGTH=245;; (*ITAG) Solyc10g009020.2.1 (e_value=2e-106) genomic_reference:SL2.40ch10 gene_region:3049888-3053583 transcript_region:SL2.40ch10:3049888..3053583+ go_terms:GO:0008270 functional_description:"Ring finger protein 141 (AHRD V1 *-*- Q28I63_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004700g0011.1 protein AED:0.04 eAED:0.04 QI:77|1|0.66|1|1|1|3|0|355; (*GB) gi|270118384|emb|CBG76064.1| (e_value=3e-85) Myb 12 transcription factor [Solanum chmielewskii];; (*SWP) sp|O22264|MYB12_ARATH (e_value=1e-63) Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1;; (*TAIR) AT5G49330.1 (e_value=7e-66) | Symbols: MYB111, ATMYB111, PFG3 | myb domain protein 111 | chr5:19999147-20001293 REVERSE LENGTH=342;; (*ITAG) Solyc12g049350.1.1 (e_value=1e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46305533-46308055 transcript_region:SL2.40ch12:46305533..46308055- go_terms:GO:0003677,GO:0045449 functional_description:"Myb 12 transcription factor (AHRD V1 ***- D2EBC3_9SOLN); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00004700g0013.1 protein AED:0.07 eAED:0.10 QI:204|0.81|0.66|1|0.72|0.75|12|0|1480; (*GB) gi|147827541|emb|CAN62071.1| (e_value=6e-172) hypothetical protein VITISV_036193 [Vitis vinifera];; (*SWP) sp|O04251|Y4211_ARATH (e_value=1e-105) BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=1 SV=3;; (*TAIR) AT4G02110.1 (e_value=1e-106) | Symbols: | transcription coactivators | chr4:935191-940191 FORWARD LENGTH=1329;; (*ITAG) Solyc06g009680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3623643-3632157 transcript_region:SL2.40ch06:3623643..3632157- go_terms:GO:0008270,GO:0005622 functional_description:"BRCT domain-containing protein (AHRD V1 *--- C5FMN4_NANOT); contains Interpro domain(s) IPR001357 BRCT "; GO:0008270,GO:0005622 NbS00004700g0012.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|114 NbS00038044g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|255581330|ref|XP_002531475.1| (e_value=3e-36) mannose-6-phosphate isomerase, putative [Ricinus communis];; (*SWP) sp|Q924M7|MPI_MOUSE (e_value=1e-17) Mannose-6-phosphate isomerase OS=Mus musculus GN=Mpi PE=2 SV=1;; (*TAIR) AT1G67070.1 (e_value=1e-28) | Symbols: DIN9, PMI2 | Mannose-6-phosphate isomerase, type I | chr1:25042324-25044412 FORWARD LENGTH=441;; (*ITAG) Solyc02g063220.2.1 (e_value=1e-45) genomic_reference:SL2.40ch02 gene_region:29847338-29852456 transcript_region:SL2.40ch02:29847338..29852456- go_terms:GO:0004476 functional_description:"Mannose-6-phosphate isomerase 2"; GO:0004476 NbS00029955g0004.1 protein AED:0.09 eAED:0.11 QI:0|0.62|0.33|1|0.37|0.22|9|0|477; (*GB) gi|297801636|ref|XP_002868702.1| (e_value=5e-166) hypothetical protein ARALYDRAFT_916331 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C9J0|LHTL5_ARATH (e_value=4e-156) Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2;; (*TAIR) AT1G71680.1 (e_value=3e-157) | Symbols: | Transmembrane amino acid transporter family protein | chr1:26944671-26946731 FORWARD LENGTH=448;; (*ITAG) Solyc02g093860.2.1 (e_value=3e-147) genomic_reference:SL2.40ch02 gene_region:49139395-49142437 transcript_region:SL2.40ch02:49139395..49142437+ go_terms:GO:0015171 functional_description:"Histidine amino acid transporter (AHRD V1 **** Q85V22_ORYSI); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00030635g0006.1 protein AED:0.13 eAED:0.14 QI:1702|0.84|0.81|1|0.65|0.59|27|227|748; (*GB) gi|359488823|ref|XP_002273685.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera];; (*SWP) sp|A2RUV5|HFM1_XENTR (e_value=4e-51) Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1;; (*TAIR) AT3G27730.1 (e_value=0.0) | Symbols: RCK, MER3 | ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133;; (*ITAG) Solyc02g086580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43809226-43817444 transcript_region:SL2.40ch02:43809226..43817444+ go_terms:GO:0004004,GO:0003678 functional_description:"ATP-dependent DNA helicase MER3 (AHRD V1 **** C5FL91_NANOT); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0003678 NbS00007276g0008.1 protein AED:0.30 eAED:0.30 QI:266|1|1|1|0.92|0.86|15|573|679; (*GB) gi|225441779|ref|XP_002283552.1| (e_value=0.0) PREDICTED: GTP-binding protein TypA/BipA homolog isoform 1 [Vitis vinifera];; (*SWP) sp|P72749|TYPA_SYNY3 (e_value=0.0) GTP-binding protein TypA/BipA homolog OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=typA PE=3 SV=1;; (*TAIR) AT5G13650.2 (e_value=0.0) | Symbols: | elongation factor family protein | chr5:4397821-4402364 FORWARD LENGTH=676;; (*ITAG) Solyc03g058190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20504510-20518591 transcript_region:SL2.40ch03:20504510..20518591+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor family GTP-binding protein (AHRD V1 **** Q67QM4_SYMTH); contains Interpro domain(s) IPR006298 GTP-binding protein TypA "; GO:0005515,GO:0003746 NbS00019272g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|0.66|0.5|4|531|428; (*ITAG) Solyc08g067890.2.1 (e_value=4e-34) genomic_reference:SL2.40ch08 gene_region:54144240-54146292 transcript_region:SL2.40ch08:54144240..54146292- functional_description:"PAFD103 protein (Fragment) (AHRD V1 ***- P93273_MALDO)"; NbS00019272g0005.1 protein AED:0.80 eAED:0.80 QI:0|0.5|0|0.66|1|1|3|0|73 NbS00058704g0003.1 protein AED:0.15 eAED:0.15 QI:545|1|0.83|1|0.8|0.66|6|0|698; (*GB) gi|255548495|ref|XP_002515304.1| (e_value=0.0) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT1G02660.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:572187-574746 REVERSE LENGTH=713;; (*ITAG) Solyc01g079600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71215157-71218914 transcript_region:SL2.40ch01:71215157..71218914- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- C1FIH0_9CHLO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00013253g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|201|383; (*GB) gi|225437569|ref|XP_002276779.1| (e_value=2e-158) PREDICTED: uncharacterized protein LOC100252201 isoform 1 [Vitis vinifera];; (*TAIR) AT2G16760.1 (e_value=3e-134) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr2:7275739-7277122 FORWARD LENGTH=327;; (*ITAG) Solyc01g079410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70996670-71002457 transcript_region:SL2.40ch01:70996670..71002457- functional_description:"SMP-30/Gluconolaconase/LRE domain protein (AHRD V1 *-*- D2QD53_SPILD); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00048114g0005.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|640; (*GB) gi|359488246|ref|XP_002281016.2| (e_value=2e-110) PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like [Vitis vinifera];; (*SWP) sp|Q9C9N6|PMI2_ARATH (e_value=7e-51) Protein PLASTID MOVEMENT IMPAIRED 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1;; (*TAIR) AT1G66840.1 (e_value=5e-52) | Symbols: PMI2, WEB2 | Plant protein of unknown function (DUF827) | chr1:24933998-24936116 REVERSE LENGTH=607;; (*ITAG) Solyc02g086350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43598508-43600584 transcript_region:SL2.40ch02:43598508..43600584+ functional_description:"Protein PLASTID MOVEMENT IMPAIRED 2 (AHRD V1 ***- PMI2_ARATH); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00048114g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|302|545; (*GB) gi|225452116|ref|XP_002281064.1| (e_value=8e-95) PREDICTED: uncharacterized protein LOC100246403 [Vitis vinifera];; (*TAIR) AT2G01190.1 (e_value=1e-38) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr2:115023-117296 FORWARD LENGTH=720;; (*ITAG) Solyc02g086360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43601058-43604121 transcript_region:SL2.40ch02:43601058..43604121- go_terms:GO:0055114 functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0055114 NbS00048114g0009.1 protein AED:0.60 eAED:0.61 QI:0|0|0|0.66|0|0|3|0|66 NbS00038526g0007.1 protein AED:0.04 eAED:0.04 QI:138|1|1|1|0.9|0.81|11|316|1282; (*GB) gi|225435191|ref|XP_002282000.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100255365 [Vitis vinifera];; (*TAIR) AT5G60150.1 (e_value=2e-25) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24218211-24223245 FORWARD LENGTH=1195;; (*ITAG) Solyc06g075420.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43201947-43206374 transcript_region:SL2.40ch06:43201947..43206374+ functional_description:"Genomic DNA chromosome 5 BAC clone F15L12 (AHRD V1 *-*- Q9LST1_ARATH)"; NbS00038526g0010.1 protein AED:0.06 eAED:0.08 QI:39|0.8|0.5|1|0.8|0.83|6|0|981; (*GB) gi|113205243|gb|AAT39312.2| (e_value=0.0) Major Facilitator Superfamily protein [Solanum demissum];; (*SWP) sp|Q9M1E2|PTR37_ARATH (e_value=3e-167) Nitrate excretion transporter 1 OS=Arabidopsis thaliana GN=NAXT1 PE=1 SV=1;; (*TAIR) AT3G45650.1 (e_value=2e-168) | Symbols: NAXT1 | nitrate excretion transporter1 | chr3:16759253-16761266 FORWARD LENGTH=558;; (*ITAG) Solyc11g072570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52826268-52828611 transcript_region:SL2.40ch11:52826268..52828611- go_terms:GO:0016020 functional_description:"Proton-dependent oligopeptide transport family protein (AHRD V1 **-- D7LMP9_ARALY); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00012117g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|224129144|ref|XP_002328901.1| (e_value=5e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g082170.2.1 (e_value=3e-75) genomic_reference:SL2.40ch06 gene_region:44368993-44374262 transcript_region:SL2.40ch06:44368993..44374262- go_terms:GO:0003676,GO:0004523,GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7MQE6_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0003676,GO:0004523,GO:0045454 NbS00012117g0008.1 protein AED:0.25 eAED:0.25 QI:0|1|0.5|1|1|1|2|0|691; (*GB) gi|356524700|ref|XP_003530966.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At1g48480-like isoform 1 [Glycine max];; (*SWP) sp|Q9LP77|Y1848_ARATH (e_value=0.0) Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1;; (*TAIR) AT1G48480.1 (e_value=0.0) | Symbols: RKL1 | receptor-like kinase 1 | chr1:17918475-17920743 FORWARD LENGTH=655;; (*ITAG) Solyc11g011020.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4060635-4063522 transcript_region:SL2.40ch11:4060635..4063522+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00012117g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|138; (*GB) gi|57013944|ref|YP_173417.1| (e_value=3e-50) hypothetical protein NitaMp075 [Nicotiana tabacum];; (*SWP) sp|Q04050|NU4M_BRACM (e_value=1e-45) NADH-ubiquinone oxidoreductase chain 4 OS=Brassica campestris GN=ND4 PE=3 SV=1;; (*ITAG) ATMG00580.1 (e_value=7e-47) | Symbols: NAD4 | NADH dehydrogenase subunit 4 | chrM:161693-169674 FORWARD LENGTH=495;; (*ITAG) Solyc11g030570.1.1 (e_value=5e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:18528249-18528440 transcript_region:SL2.40ch11:18528249..18528440+ go_terms:GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase chain 4 (AHRD V1 ***- Q5M9Z8_TOBAC); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00020494g0002.1 protein AED:0.05 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|415; (*GB) gi|198400349|gb|ACH87183.1| (e_value=1e-54) unknown protein [Camellia sinensis];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=8e-27) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT2G36430.1 (e_value=2e-36) | Symbols: | Plant protein of unknown function (DUF247) | chr2:15290211-15291557 FORWARD LENGTH=448;; (*ITAG) Solyc01g057260.2.1 (e_value=1e-81) genomic_reference:SL2.40ch01 gene_region:53150800-53153577 transcript_region:SL2.40ch01:53150800..53153577+ functional_description:"Os06g0524700 protein (Fragment) (AHRD V1 ***- Q0DBU9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00020494g0014.1 protein AED:0.50 eAED:0.50 QI:61|0|0.5|0.5|1|1|2|0|69 NbS00020494g0021.1 protein AED:0.16 eAED:0.16 QI:99|1|1|1|0.66|0.75|4|327|87; (*GB) gi|225433167|ref|XP_002285284.1| (e_value=1e-59) PREDICTED: uncharacterized protein At3g23325 [Vitis vinifera];; (*SWP) sp|Q9LW64|SF3BA_ARATH (e_value=4e-60) Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=2 SV=1;; (*TAIR) AT3G23325.1 (e_value=3e-61) | Symbols: | Splicing factor 3B subunit 5/RDS3 complex subunit 10 | chr3:8345808-8346856 FORWARD LENGTH=87;; (*ITAG) Solyc08g069080.2.1 (e_value=1e-63) genomic_reference:SL2.40ch08 gene_region:55370023-55373387 transcript_region:SL2.40ch08:55370023..55373387+ go_terms:GO:0005515 functional_description:"Splicing factor 3B subunit 5 (AHRD V1 ***- B0XFY1_CULQU); contains Interpro domain(s) IPR017089 Splicing factor 3B, subunit 5 "; GO:0005515 NbS00020494g0015.1 protein AED:0.22 eAED:0.22 QI:288|1|0.75|1|1|1|4|0|218; (*GB) gi|255544121|ref|XP_002513123.1| (e_value=6e-74) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FMW4|GEML8_ARATH (e_value=2e-56) Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1;; (*TAIR) AT5G23370.1 (e_value=2e-57) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:7863542-7864201 REVERSE LENGTH=219;; (*ITAG) Solyc04g008970.2.1 (e_value=7e-120) genomic_reference:SL2.40ch04 gene_region:2564833-2566646 transcript_region:SL2.40ch04:2564833..2566646+ functional_description:"FIP1 (AHRD V1 **-- B6U778_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00020494g0005.1 protein AED:0.37 eAED:0.37 QI:283|1|1|1|1|1|4|232|219; (*GB) gi|255544121|ref|XP_002513123.1| (e_value=9e-80) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FMW4|GEML8_ARATH (e_value=5e-66) Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1;; (*TAIR) AT5G23370.1 (e_value=4e-67) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:7863542-7864201 REVERSE LENGTH=219;; (*ITAG) Solyc04g008970.2.1 (e_value=1e-127) genomic_reference:SL2.40ch04 gene_region:2564833-2566646 transcript_region:SL2.40ch04:2564833..2566646+ functional_description:"FIP1 (AHRD V1 **-- B6U778_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00020494g0006.1 protein AED:0.61 eAED:0.69 QI:0|0|0.25|0.5|1|1|4|0|161; (*GB) gi|224083864|ref|XP_002307149.1| (e_value=1e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMW4|GEML8_ARATH (e_value=7e-35) Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1;; (*TAIR) AT5G23370.1 (e_value=5e-36) | Symbols: | GRAM domain-containing protein / ABA-responsive protein-related | chr5:7863542-7864201 REVERSE LENGTH=219;; (*ITAG) Solyc04g008970.2.1 (e_value=1e-50) genomic_reference:SL2.40ch04 gene_region:2564833-2566646 transcript_region:SL2.40ch04:2564833..2566646+ functional_description:"FIP1 (AHRD V1 **-- B6U778_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00005716g0002.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|287; (*GB) gi|225428873|ref|XP_002285113.1| (e_value=9e-91) PREDICTED: uncharacterized protein LOC100267469 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=3e-77) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc01g107800.2.1 (e_value=2e-139) genomic_reference:SL2.40ch01 gene_region:86978546-86980025 transcript_region:SL2.40ch01:86978546..86980025- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV16_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00027543g0001.1 protein AED:0.12 eAED:0.23 QI:0|0|0|1|1|1|2|0|216; (*GB) gi|255550249|ref|XP_002516175.1| (e_value=5e-23) transmembrane protein 14, putative [Ricinus communis];; (*SWP) sp|O64847|U136_ARATH (e_value=3e-20) UPF0136 membrane protein At2g26240 OS=Arabidopsis thaliana GN=At2g26240 PE=2 SV=1;; (*TAIR) AT3G43520.1 (e_value=5e-21) | Symbols: | Transmembrane proteins 14C | chr3:15406088-15407699 FORWARD LENGTH=240;; (*ITAG) Solyc11g073240.1.1 (e_value=1e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53353841-53354590 transcript_region:SL2.40ch11:53353841..53354590+ go_terms:GO:0016020 functional_description:"Transmembrane protein 14C (AHRD V1 *-*- Q09JH3_ARGMO); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00027543g0003.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|1|1|2|0|152; (*GB) gi|255555093|ref|XP_002518584.1| (e_value=2e-40) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LK58|PP225_ARATH (e_value=1e-30) Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1;; (*TAIR) AT3G13150.1 (e_value=8e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4227975-4229630 REVERSE LENGTH=551;; (*ITAG) Solyc02g079830.1.1 (e_value=3e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38822929-38824131 transcript_region:SL2.40ch02:38822929..38824131+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KN35_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00027422g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.83|1|1|1|6|0|380; (*GB) gi|356558851|ref|XP_003547716.1| (e_value=6e-107) PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Glycine max];; (*SWP) sp|Q99383|HRP1_YEAST (e_value=7e-41) Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1;; (*TAIR) AT5G40490.1 (e_value=5e-97) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:16225483-16227423 FORWARD LENGTH=423;; (*ITAG) Solyc02g093340.2.1 (e_value=4e-144) genomic_reference:SL2.40ch02 gene_region:48818618-48822221 transcript_region:SL2.40ch02:48818618..48822221+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00044399g0001.1 protein AED:0.10 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|131; (*ITAG) Solyc09g010610.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3951384-3954494 transcript_region:SL2.40ch09:3951384..3954494- functional_description:"Unknown Protein (AHRD V1)"; NbC26290280g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|92; (*GB) gi|296086869|emb|CBI33036.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G10150.1 (e_value=1e-24) | Symbols: | Domain of unknown function (DUF966) | chr5:3182176-3183834 REVERSE LENGTH=414;; (*ITAG) Solyc04g054790.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52413899-52415068 transcript_region:SL2.40ch04:52413899..52415068+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00014693g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0.33|0.75|4|0|273; (*GB) gi|83778373|gb|ABC47127.1| (e_value=1e-164) beta expansin 1 precursor [Solanum tuberosum];; (*SWP) sp|Q5W6Z9|EXB18_ORYSJ (e_value=6e-104) Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1;; (*TAIR) AT1G65680.1 (e_value=2e-103) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273;; (*ITAG) Solyc01g090810.2.1 (e_value=1e-169) genomic_reference:SL2.40ch01 gene_region:76281992-76283974 transcript_region:SL2.40ch01:76281992..76283974+ go_terms:GO:0005576 functional_description:"Expansin protein (AHRD V1 ***- Q14F61_WHEAT); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00014693g0012.1 protein AED:0.14 eAED:0.14 QI:42|0.63|0.66|1|0.63|0.41|12|0|954; (*GB) gi|343197034|gb|AEM05853.1| (e_value=0.0) camphene/tricyclene synthase [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=5e-176) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT4G16730.1 (e_value=7e-138) | Symbols: TPS02 | terpene synthase 02 | chr4:9403119-9406003 FORWARD LENGTH=539;; (*ITAG) Solyc01g105870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85651702-85655605 transcript_region:SL2.40ch01:85651702..85655605+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00030164g0005.1 protein AED:0.00 eAED:0.00 QI:6|1|0.5|1|1|0.5|2|0|106 NbS00030164g0008.1 protein AED:0.13 eAED:0.13 QI:195|1|0.33|1|1|1|3|0|122 NbS00010453g0015.1 protein AED:0.10 eAED:0.10 QI:624|0.8|0.5|1|0.4|0.5|6|0|971; (*GB) gi|225439486|ref|XP_002269998.1| (e_value=0.0) PREDICTED: ethylene-overproduction protein 1-like [Vitis vinifera];; (*SWP) sp|O65020|ETO1_ARATH (e_value=0.0) Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2;; (*TAIR) AT3G51770.2 (e_value=0.0) | Symbols: ETO1 | tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203998 REVERSE LENGTH=959;; (*ITAG) Solyc10g076450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58747957-58751931 transcript_region:SL2.40ch10:58747957..58751931- go_terms:GO:0005515,GO:0005488 functional_description:"Ethylene-overproduction protein 1 (AHRD V1 **-- D7LTY2_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0005488 NbS00010453g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|5|0|736; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=0.0) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|O13864|IMB1_SCHPO (e_value=1e-99) Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=2 SV=1;; (*TAIR) AT3G08943.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00010453g0003.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|716; (*GB) gi|359481281|ref|XP_002267556.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267833 [Vitis vinifera];; (*SWP) sp|Q9M020|LRK63_ARATH (e_value=0.0) Lectin-domain containing receptor kinase VI.3 OS=Arabidopsis thaliana GN=LECRK63 PE=2 SV=1;; (*TAIR) AT5G01550.1 (e_value=0.0) | Symbols: LECRKA4.2 | lectin receptor kinase a4.1 | chr5:214517-216583 REVERSE LENGTH=688;; (*ITAG) Solyc09g005000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:6033-8057 transcript_region:SL2.40ch09:6033..8057+ go_terms:GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0016301 NbS00010453g0012.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|0|0|2|0|167; (*ITAG) Solyc09g005020.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:15851-16603 transcript_region:SL2.40ch09:15851..16603- functional_description:"Unknown Protein (AHRD V1)"; NbS00028056g0005.1 protein AED:0.10 eAED:0.10 QI:837|0.75|0.4|1|0|0|5|0|224; (*ITAG) Solyc11g011230.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00028056g0003.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|2|0|208; (*ITAG) Solyc11g011230.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4283301-4285605 transcript_region:SL2.40ch11:4283301..4285605+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030206g0001.1 protein AED:0.37 eAED:0.38 QI:0|0|0|1|0|0.5|2|0|112; (*GB) gi|296084859|emb|CBI28268.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G22210.2 (e_value=1e-24) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:7359549-7359791 FORWARD LENGTH=80;; (*ITAG) Solyc11g068810.1.1 (e_value=1e-46) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50510078-50510311 transcript_region:SL2.40ch11:50510078..50510311- functional_description:"Unknown Protein (AHRD V1)"; NbS00000092g0027.1 protein AED:0.24 eAED:0.24 QI:0|0.7|0.81|0.90|0.9|0.81|11|261|595; (*GB) gi|255577262|ref|XP_002529513.1| (e_value=0.0) disulfide oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q70G58|NTRC_ORYSJ (e_value=0.0) Thioredoxin reductase NTRC OS=Oryza sativa subsp. japonica GN=Os07g0657900 PE=1 SV=2;; (*TAIR) AT2G41680.1 (e_value=0.0) | Symbols: NTRC | NADPH-dependent thioredoxin reductase C | chr2:17376349-17379028 REVERSE LENGTH=529;; (*ITAG) Solyc10g080080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60795723-60801941 transcript_region:SL2.40ch10:60795723..60801941- go_terms:GO:0005737,GO:0045454,GO:0055114 functional_description:"Thioredoxin reductase (AHRD V1 ***- B9H9S9_POPTR); contains Interpro domain(s) IPR005982 Thioredoxin reductase "; GO:0005737,GO:0045454,GO:0055114 NbS00000092g0028.1 protein AED:0.27 eAED:0.27 QI:167|0.85|0.62|1|0.71|0.62|8|0|321; (*GB) gi|297829558|ref|XP_002882661.1| (e_value=8e-168) transcription initiation factor IIB-2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SS44|TF2B2_ARATH (e_value=3e-168) Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=3e-169) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60239317-60242457 transcript_region:SL2.40ch10:60239317..60242457- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbS00000092g0026.1 protein AED:0.33 eAED:0.33 QI:549|0.33|0.5|0.75|0.33|0.25|4|0|133; (*GB) gi|225426757|ref|XP_002282540.1| (e_value=2e-38) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=2e-33) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.1 (e_value=1e-34) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=699;; (*ITAG) Solyc08g007800.2.1 (e_value=1e-51) genomic_reference:SL2.40ch08 gene_region:2311212-2317511 transcript_region:SL2.40ch08:2311212..2317511- go_terms:GO:0055085 functional_description:"Transporter major facilitator family (AHRD V1 *--- B1EKR1_9ESCH); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00000092g0033.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.42|0.85|0.83|0.71|7|168|246; (*GB) gi|297824129|ref|XP_002879947.1| (e_value=3e-124) GTP-binding family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8R2R6|MTG1_MOUSE (e_value=7e-26) Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2;; (*TAIR) AT2G41670.1 (e_value=1e-126) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17374118-17376177 FORWARD LENGTH=386;; (*ITAG) Solyc10g080070.1.1 (e_value=4e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60791938-60795119 transcript_region:SL2.40ch10:60791938..60795119+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0003924 NbS00000092g0002.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|98 NbS00000092g0034.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|3|0|292; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=1e-121) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-114) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=1e-44) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc10g079980.1.1 (e_value=1e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60739796-60741211 transcript_region:SL2.40ch10:60739796..60741211+ go_terms:GO:0008152 functional_description:"UDP-glucose glucosyltransferase (AHRD V1 ***- B6EWX3_LYCBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00035800g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.4|0.33|0.83|0.8|0.66|6|0|500; (*GB) gi|297745817|emb|CBI15873.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q56YT0|LAC3_ARATH (e_value=0.0) Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2;; (*TAIR) AT2G30210.1 (e_value=0.0) | Symbols: LAC3 | laccase 3 | chr2:12887735-12889827 REVERSE LENGTH=570;; (*ITAG) Solyc06g082240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44437686-44440095 transcript_region:SL2.40ch06:44437686..44440095+ go_terms:GO:0004322 functional_description:"Laccase-13 (AHRD V1 ***- D7LZX9_ARALY); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00000545g0007.1 protein AED:0.04 eAED:0.04 QI:180|1|1|1|1|1|5|124|475; (*GB) gi|255569697|ref|XP_002525813.1| (e_value=2e-89) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01110.2 (e_value=5e-56) | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54494 FORWARD LENGTH=527;; (*ITAG) Solyc01g009340.2.1 (e_value=1e-131) genomic_reference:SL2.40ch01 gene_region:3537686-3541807 transcript_region:SL2.40ch01:3537686..3541807+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00000545g0008.1 protein AED:0.16 eAED:0.16 QI:205|0.8|0.66|1|0.6|0.66|6|0|419; (*GB) gi|359474169|ref|XP_003631410.1| (e_value=5e-171) PREDICTED: uncharacterized protein LOC100247984 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8R1R3|STAR7_MOUSE (e_value=2e-12) StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2;; (*TAIR) AT1G64720.1 (e_value=3e-156) | Symbols: CP5 | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:24046887-24048537 REVERSE LENGTH=385;; (*ITAG) Solyc03g081320.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45738953-45742666 transcript_region:SL2.40ch03:45738953..45742666+ functional_description:"Membrane related protein (AHRD V1 **-- Q6ZXK5_ORYSJ); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00013214g0002.1 protein AED:0.03 eAED:0.03 QI:60|1|1|1|1|1|2|136|75; (*GB) gi|3915102|sp|Q40901.1|DEF_PETIN (e_value=3e-27) RecName: Full=Defensin-like protein; AltName: Full=Gamma-thionin homolog PPT; Flags: Precursor;; (*SWP) sp|Q40901|DEF_PETIN (e_value=9e-29) Defensin-like protein OS=Petunia integrifolia PE=2 SV=1;; (*TAIR) AT2G02100.1 (e_value=9e-16) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc07g007730.2.1 (e_value=1e-25) genomic_reference:SL2.40ch07 gene_region:2374606-2376176 transcript_region:SL2.40ch07:2374606..2376176- go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N683_SOLPI); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00042931g0001.1 protein AED:0.20 eAED:0.20 QI:35|0.54|0.5|1|1|1|12|0|783; (*GB) gi|225437402|ref|XP_002268231.1| (e_value=0.0) PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera];; (*SWP) sp|Q5TAP6|UT14C_HUMAN (e_value=3e-17) U3 small nucleolar RNA-associated protein 14 homolog C OS=Homo sapiens GN=UTP14C PE=1 SV=1;; (*TAIR) AT4G02400.1 (e_value=1e-88) | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr4:1054243-1057884 FORWARD LENGTH=855;; (*ITAG) Solyc09g005760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:527331-535057 transcript_region:SL2.40ch09:527331..535057+ go_terms:GO:0032040 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 *-*- B6K6T5_SCHJY); contains Interpro domain(s) IPR006709 Small-subunit processome, Utp14 "; GO:0032040 NbS00010180g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|116; (*GB) gi|255557373|ref|XP_002519717.1| (e_value=8e-45) mitochondrial inner membrane protease subunit, putative [Ricinus communis];; (*TAIR) AT1G53530.1 (e_value=3e-43) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19978249-19979778 FORWARD LENGTH=168;; (*ITAG) Solyc02g068390.2.1 (e_value=4e-69) genomic_reference:SL2.40ch02 gene_region:32919197-32922504 transcript_region:SL2.40ch02:32919197..32922504+ go_terms:GO:0004252,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 1 (AHRD V1 **-- B6T7U7_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004252,GO:0004222 NbS00040063g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|99 NbS00040063g0002.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|107|405; (*GB) gi|224133722|ref|XP_002327664.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32420.1 (e_value=3e-16) | Symbols: | F-box and associated interaction domains-containing protein | chr1:11701995-11702903 FORWARD LENGTH=302;; (*ITAG) Solyc02g070620.2.1 (e_value=2e-178) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00047768g0002.1 protein AED:0.25 eAED:0.44 QI:0|0|0|0.66|0|0|3|0|143 NbS00010830g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.33|0.83|0.8|0.66|6|203|268; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00015480g0010.1 protein AED:0.09 eAED:0.14 QI:1|0.5|0|1|0.5|0.66|3|0|317; (*GB) gi|356569068|ref|XP_003552728.1| (e_value=2e-73) PREDICTED: LOB domain-containing protein 41-like [Glycine max];; (*SWP) sp|Q9M886|LBD41_ARATH (e_value=1e-64) LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1;; (*TAIR) AT3G02550.1 (e_value=9e-66) | Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263;; (*ITAG) Solyc05g009320.2.1 (e_value=2e-112) genomic_reference:SL2.40ch05 gene_region:3454579-3455891 transcript_region:SL2.40ch05:3454579..3455891- functional_description:"LOB domain protein 42 (AHRD V1 ***- D7KWD0_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00015480g0004.1 protein AED:0.68 eAED:0.68 QI:246|0|0.2|0.2|1|1|5|0|203 NbS00045829g0003.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|0|1|2|0|83; (*GB) gi|166012639|gb|ABY77914.1| (e_value=1e-44) NADH-ubiquinone oxidoreductase-like protein [Camellia sinensis];; (*SWP) sp|Q9LZI6|NDS5B_ARATH (e_value=7e-46) NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana GN=At3g62790 PE=2 SV=1;; (*TAIR) AT3G62790.1 (e_value=6e-47) | Symbols: | NADH-ubiquinone oxidoreductase-related | chr3:23223321-23224221 REVERSE LENGTH=83;; (*ITAG) Solyc11g005880.1.1 (e_value=7e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:705049-709360 transcript_region:SL2.40ch11:705049..709360- functional_description:"NADH-ubiquinone oxidoreductase kD subunit (AHRD V1 ***- C6H1Q6_AJECH)"; NbS00014477g0003.1 protein AED:0.11 eAED:0.11 QI:443|0.75|0.88|1|0.62|0.55|9|302|196; (*GB) gi|297745726|emb|CBI15782.3| (e_value=3e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96MV1|TMM56_HUMAN (e_value=2e-11) Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1;; (*TAIR) AT4G10360.2 (e_value=9e-75) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr4:6420679-6422108 FORWARD LENGTH=266;; (*ITAG) Solyc09g018670.2.1 (e_value=3e-85) genomic_reference:SL2.40ch09 gene_region:16609593-16612976 transcript_region:SL2.40ch09:16609593..16612976+ go_terms:GO:0016021 functional_description:"Transmembrane protein 56 (AHRD V1 ***- B6TI82_MAIZE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00014477g0030.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|1|1|2|0|201; (*GB) gi|75278818|sp|O80363.1|RK17_TOBAC (e_value=3e-117) RecName: Full=50S ribosomal protein L17, chloroplastic; AltName: Full=CL17; Flags: Precursor;; (*SWP) sp|O80363|RK17_TOBAC (e_value=1e-118) 50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1;; (*TAIR) AT3G54210.1 (e_value=7e-97) | Symbols: | Ribosomal protein L17 family protein | chr3:20067672-20068385 REVERSE LENGTH=211;; (*ITAG) Solyc06g082760.2.1 (e_value=1e-113) genomic_reference:SL2.40ch06 gene_region:44743556-44745679 transcript_region:SL2.40ch06:44743556..44745679- go_terms:GO:0005840 functional_description:"50S ribosomal protein L17 (AHRD V1 ***- B4FZB4_MAIZE); contains Interpro domain(s) IPR000456 Ribosomal protein L17 "; GO:0005840 NbS00014477g0024.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|0|0|2|0|126; (*GB) gi|356569974|ref|XP_003553168.1| (e_value=1e-72) PREDICTED: uncharacterized protein LOC100807863 [Glycine max];; (*TAIR) AT5G58250.1 (e_value=6e-66) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23559558-23560372 FORWARD LENGTH=211;; (*ITAG) Solyc06g007760.2.1 (e_value=2e-80) genomic_reference:SL2.40ch06 gene_region:1716214-1719252 transcript_region:SL2.40ch06:1716214..1719252+ functional_description:"Ycf54 protein (AHRD V1 *--- Q8DIT2_THEEB); contains Interpro domain(s) IPR019616 Protein of unknown function DUF2488 "; NbS00014477g0028.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.6|1|0.75|0.8|5|0|259; (*GB) gi|255537629|ref|XP_002509881.1| (e_value=5e-78) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O82352|RTNLE_ARATH (e_value=2e-71) Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1;; (*TAIR) AT2G46170.1 (e_value=1e-72) | Symbols: | Reticulon family protein | chr2:18965410-18966940 FORWARD LENGTH=255;; (*ITAG) Solyc09g055250.2.1 (e_value=9e-148) genomic_reference:SL2.40ch09 gene_region:33896657-33898961 transcript_region:SL2.40ch09:33896657..33898961- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00014477g0033.1 protein AED:0.16 eAED:0.16 QI:1608|0.9|0.85|1|0.5|0.52|21|175|333; (*GB) gi|359478480|ref|XP_002275696.2| (e_value=2e-93) PREDICTED: Werner syndrome ATP-dependent helicase-like [Vitis vinifera];; (*ITAG) Solyc09g018690.2.1 (e_value=2e-174) genomic_reference:SL2.40ch09 gene_region:16650956-16659134 transcript_region:SL2.40ch09:16650956..16659134- go_terms:GO:0006310,GO:0006281,GO:0005622 functional_description:"ATP-dependent DNA helicase RecQ (AHRD V1 ***- A8MFY8_ALKOO); contains Interpro domain(s) IPR018982 RQC domain "; GO:0006310,GO:0006281,GO:0005622 NbS00014477g0026.1 protein AED:0.18 eAED:0.18 QI:0|1|0|1|1|1|2|0|127; (*GB) gi|351726772|ref|NP_001236370.1| (e_value=6e-39) uncharacterized protein LOC100305764 [Glycine max];; (*SWP) sp|O76464|NFT1_DROME (e_value=4e-15) Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1;; (*TAIR) AT5G58240.1 (e_value=2e-38) | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:23558349-23559313 REVERSE LENGTH=180;; (*ITAG) Solyc09g018630.2.1 (e_value=1e-46) genomic_reference:SL2.40ch09 gene_region:16016790-16017690 transcript_region:SL2.40ch09:16016790..16017690- go_terms:GO:0003824 functional_description:"Bis(5&apos-adenosyl)-triphosphatase-like protein (AHRD V1 **-- Q9LVM4_ARATH); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003824 NbS00014477g0035.1 protein AED:0.51 eAED:0.52 QI:0|1|0|1|0|0.5|2|0|117; (*ITAG) Solyc09g018650.2.1 (e_value=7e-21) genomic_reference:SL2.40ch09 gene_region:16022303-16024804 transcript_region:SL2.40ch09:16022303..16024804- go_terms:GO:0003824 functional_description:"Bis(5&apos-adenosyl)-triphosphatase-like protein (AHRD V1 *-*- Q9LVM4_ARATH); contains Interpro domain(s) IPR011151 Histidine triad motif "; GO:0003824 NbS00040910g0005.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|0|375; (*GB) gi|257831427|gb|ACV71014.1| (e_value=0.0) UPA14 [Capsicum annuum];; (*TAIR) AT5G58730.1 (e_value=3e-125) | Symbols: | pfkB-like carbohydrate kinase family protein | chr5:23723627-23725324 REVERSE LENGTH=353;; (*ITAG) Solyc06g076950.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44215180-44219042 transcript_region:SL2.40ch06:44215180..44219042+ go_terms:GO:0016301 functional_description:"Carbohydrate kinase PfkB (AHRD V1 **** B6TDQ7_MAIZE); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00040910g0007.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|171; (*GB) gi|217793962|gb|ACK56115.1| (e_value=7e-32) ELF4-like protein [Ipomoea nil];; (*SWP) sp|O04211|ELF4_ARATH (e_value=1e-25) Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1;; (*TAIR) AT2G40080.1 (e_value=8e-27) | Symbols: ELF4 | Protein of unknown function (DUF1313) | chr2:16734545-16734880 REVERSE LENGTH=111;; (*ITAG) Solyc06g076960.1.1 (e_value=8e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:44219386-44219790 transcript_region:SL2.40ch06:44219386..44219790+ functional_description:"ELF4-like protein (AHRD V1 *-*- C6ZKH9_IPONI); contains Interpro domain(s) IPR009741 Protein of unknown function DUF1313 "; NbS00019534g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.6|0.8|1|1|5|643|262; (*GB) gi|118489270|gb|ABK96440.1| (e_value=4e-81) unknown [Populus trichocarpa x Populus deltoides];; (*TAIR) AT1G49590.1 (e_value=2e-63) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr1:18354997-18356409 FORWARD LENGTH=242;; (*ITAG) Solyc01g108430.2.1 (e_value=6e-133) genomic_reference:SL2.40ch01 gene_region:87522332-87526461 transcript_region:SL2.40ch01:87522332..87526461+ go_terms:GO:0005634,GO:0008270 functional_description:"WW domain-binding protein 4 (AHRD V1 *-*- C1C256_9MAXI); contains Interpro domain(s) IPR013085 Zinc finger, U1-C type "; GO:0005634,GO:0008270 NbS00019534g0001.1 protein AED:0.55 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|72; (*TAIR) AT1G77540.1 (e_value=4e-14) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:29137762-29138182 REVERSE LENGTH=114;; (*ITAG) Solyc08g067800.1.1 (e_value=1e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:54054786-54055097 transcript_region:SL2.40ch08:54054786..54055097- go_terms:GO:0004402 functional_description:"Acetyltransferase (AHRD V1 **-* B4RG69_PHEZH); contains Interpro domain(s) IPR016181 Acyl-CoA N-acyltransferase "; GO:0004402 NbS00035598g0008.1 protein AED:0.23 eAED:0.23 QI:163|0.83|0.85|1|0.66|0.71|7|303|286; (*GB) gi|15778154|dbj|BAB68527.1| (e_value=2e-148) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93214|14339_SOLLC (e_value=9e-149) 14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2;; (*TAIR) AT1G26480.1 (e_value=6e-133) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc07g053260.2.1 (e_value=6e-150) genomic_reference:SL2.40ch07 gene_region:59058945-59063496 transcript_region:SL2.40ch07:59058945..59063496+ go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00050273g0004.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|0.75|0.8|5|260|220; (*GB) gi|224105495|ref|XP_002313831.1| (e_value=3e-79) predicted protein [Populus trichocarpa];; (*SWP) sp|Q922M5|CDA7L_MOUSE (e_value=2e-24) Cell division cycle-associated 7-like protein OS=Mus musculus GN=Cdca7l PE=2 SV=1;; (*TAIR) AT4G37110.1 (e_value=1e-72) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 | chr4:17484343-17486197 REVERSE LENGTH=417;; (*ITAG) Solyc12g088480.1.1 (e_value=2e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62274635-62277005 transcript_region:SL2.40ch12:62274635..62277005+ functional_description:"Cell division cycle associated 7 (AHRD V1 ***- Q28DP7_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00004355g0008.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|0|0.33|3|0|160; (*GB) gi|57013940|ref|YP_173413.1| (e_value=6e-48) hypothetical protein NitaMp069 [Nicotiana tabacum]; NbS00014724g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|30687198|ref|NP_173538.2| (e_value=5e-78) Vacuolar iron transporter-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9LPU9|VITH1_ARATH (e_value=1e-79) Vacuolar iron transporter homolog 1 OS=Arabidopsis thaliana GN=At1g21140 PE=2 SV=1;; (*TAIR) AT1G21140.1 (e_value=1e-80) | Symbols: | Vacuolar iron transporter (VIT) family protein | chr1:7404464-7405066 FORWARD LENGTH=200;; (*ITAG) Solyc01g104780.2.1 (e_value=5e-80) genomic_reference:SL2.40ch01 gene_region:84908606-84909449 transcript_region:SL2.40ch01:84908606..84909449- functional_description:"Nodulin-related integral membrane protein DUF125 (AHRD V1 *-*- C7JBI4_ACEP3); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00014724g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.6|1|1|1|5|0|280; (*GB) gi|356557527|ref|XP_003547067.1| (e_value=1e-60) PREDICTED: auxin-induced protein 5NG4-like [Glycine max];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-26) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=5e-37) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g104750.2.1 (e_value=4e-109) genomic_reference:SL2.40ch01 gene_region:84887229-84889802 transcript_region:SL2.40ch01:84887229..84889802- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00014724g0005.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|69; (*ITAG) Solyc01g104690.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:84867131-84868591 transcript_region:SL2.40ch01:84867131..84868591- functional_description:"Unknown Protein (AHRD V1)"; NbS00013851g0012.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.90|0.91|12|97|551; (*GB) gi|350536179|ref|NP_001234489.1| (e_value=0.0) cystathionine gamma synthase [Solanum lycopersicum];; (*SWP) sp|P55217|METB_ARATH (e_value=0.0) Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3;; (*TAIR) AT3G01120.1 (e_value=0.0) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00013851g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|0.33|1|1|0.66|3|0|243; (*GB) gi|225452879|ref|XP_002283890.1| (e_value=3e-101) PREDICTED: SPX domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|Q94A21|SPX4_ARATH (e_value=7e-91) SPX domain-containing protein 4 OS=Arabidopsis thaliana GN=SPX4 PE=2 SV=1;; (*TAIR) AT5G15330.1 (e_value=5e-92) | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:4980595-4982043 FORWARD LENGTH=318;; (*ITAG) Solyc02g088210.2.1 (e_value=7e-134) genomic_reference:SL2.40ch02 gene_region:44949824-44954729 transcript_region:SL2.40ch02:44949824..44954729+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00013851g0011.1 protein AED:0.31 eAED:0.33 QI:0|0.12|0.11|0.88|0.12|0.11|9|0|1053; (*GB) gi|359490245|ref|XP_002268526.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g62370-like [Vitis vinifera];; (*SWP) sp|Q9LVA2|PP443_ARATH (e_value=1e-129) Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1;; (*TAIR) AT5G62370.1 (e_value=1e-130) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:25041901-25044849 REVERSE LENGTH=982;; (*ITAG) Solyc03g093150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47798304-47801246 transcript_region:SL2.40ch03:47798304..47801246- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00043532g0007.1 protein AED:0.21 eAED:0.30 QI:0|0.75|0.8|1|0.25|0.4|5|0|204; (*GB) gi|358248178|ref|NP_001240088.1| (e_value=9e-81) uncharacterized protein LOC100786260 [Glycine max];; (*SWP) sp|P22686|CB2_CHLMO (e_value=1e-34) Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1;; (*TAIR) AT1G76570.1 (e_value=1e-79) | Symbols: | Chlorophyll A-B binding family protein | chr1:28729132-28730754 FORWARD LENGTH=327;; (*ITAG) Solyc04g082920.2.1 (e_value=2e-96) genomic_reference:SL2.40ch04 gene_region:63995764-64004406 transcript_region:SL2.40ch04:63995764..64004406+ go_terms:GO:0031409,GO:0016168 functional_description:"Chlorophyll a-b binding protein, chloroplastic (AHRD V1 **** CB2_PHYPA); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0031409,GO:0016168 NbS00019903g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|20|174|1434; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00047825g0011.1 protein AED:0.27 eAED:0.28 QI:0|1|0.83|1|1|1|6|0|316; (*GB) gi|37654464|gb|AAP34306.1| (e_value=1e-172) copper chaperone precursor [Solanum tuberosum];; (*SWP) sp|Q9WU84|CCS_MOUSE (e_value=4e-44) Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1;; (*TAIR) AT1G12520.1 (e_value=9e-128) | Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267277-4268900 REVERSE LENGTH=320;; (*ITAG) Solyc08g079830.2.1 (e_value=7e-174) genomic_reference:SL2.40ch08 gene_region:60441494-60444511 transcript_region:SL2.40ch08:60441494..60444511- go_terms:GO:0016532 functional_description:"Cu/Zn-superoxide dismutase copper chaperone (AHRD V1 **** Q9BBU5_SOYBN); contains Interpro domain(s) IPR001424 Superoxide dismutase, copper/zinc binding "; GO:0016532 NbS00047825g0003.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|77 NbS00047825g0016.1 protein AED:0.13 eAED:0.16 QI:316|0.75|0.44|1|0.25|0.44|9|0|885; (*GB) gi|297742644|emb|CBI34793.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73970.1 (e_value=0.0) | Symbols: | unknown protein; Has 34 Blast hits to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:27817140-27819963 FORWARD LENGTH=803;; (*ITAG) Solyc08g079810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60430800-60436352 transcript_region:SL2.40ch08:60430800..60436352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047825g0004.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|244; (*GB) gi|224112807|ref|XP_002316298.1| (e_value=2e-85) predicted protein [Populus trichocarpa];; (*TAIR) AT1G65520.1 (e_value=5e-76) | Symbols: ATECI1, ECI1, ECHIC, PEC11 | delta(3), delta(2)-enoyl CoA isomerase 1 | chr1:24361171-24361893 REVERSE LENGTH=240;; (*ITAG) Solyc01g091520.2.1 (e_value=3e-122) genomic_reference:SL2.40ch01 gene_region:76904829-76905887 transcript_region:SL2.40ch01:76904829..76905887+ go_terms:GO:0004165 functional_description:"Enoyl-CoA hydratase/isomerase family protein (AHRD V1 **** D7KSC7_ARALY); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0004165 NbS00047825g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.71|0.87|1|1|1|8|361|343; (*GB) gi|110622992|emb|CAJ55406.1| (e_value=1e-171) ADP-sugar diphosphatase [Solanum tuberosum];; (*SWP) sp|Q9SZ63|NUD14_ARATH (e_value=5e-123) Nudix hydrolase 14, chloroplastic OS=Arabidopsis thaliana GN=NUDT14 PE=1 SV=2;; (*TAIR) AT4G11980.1 (e_value=3e-124) | Symbols: ATNUDT14, ATNUDX14, NUDX14 | nudix hydrolase homolog 14 | chr4:7183845-7185551 REVERSE LENGTH=309;; (*ITAG) Solyc08g079820.2.1 (e_value=3e-177) genomic_reference:SL2.40ch08 gene_region:60437849-60441440 transcript_region:SL2.40ch08:60437849..60441440+ go_terms:GO:0080042,GO:0080041 functional_description:"ADP-ribose pyrophosphatase (AHRD V1 *-** B2GB88_LACF3); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0080042,GO:0080041 NbS00002012g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|2497757|sp|Q42952.1|NLTP1_TOBAC (e_value=8e-35) RecName: Full=Non-specific lipid-transfer protein 1; Short=LTP 1; AltName: Full=Pathogenesis-related protein 14; Short=PR-14; Flags: Precursor;; (*SWP) sp|Q42952|NLTP1_TOBAC (e_value=2e-36) Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1;; (*TAIR) AT2G38530.1 (e_value=3e-23) | Symbols: LTP2, LP2, cdf3 | lipid transfer protein 2 | chr2:16128481-16128948 FORWARD LENGTH=118;; (*ITAG) Solyc10g075100.1.1 (e_value=5e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58135114-58135744 transcript_region:SL2.40ch10:58135114..58135744- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q4A1N1_SOLLC); contains Interpro domain(s) IPR000528 Plant lipid transfer protein/Par allergen "; GO:0005516,GO:0005319 NbS00013473g0002.1 protein AED:0.24 eAED:0.59 QI:10|0|0|0.5|0.33|0.25|4|0|179; (*GB) gi|343172100|gb|AEL98754.1| (e_value=8e-18) translocon-associated protein, partial [Silene latifolia];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=4e-18) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04945.3 (e_value=5e-19) | Symbols: | HIT-type Zinc finger family protein | chr1:1399588-1402651 FORWARD LENGTH=644;; (*ITAG) Solyc04g076740.2.1 (e_value=1e-20) genomic_reference:SL2.40ch04 gene_region:59228814-59231535 transcript_region:SL2.40ch04:59228814..59231535+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00050766g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|302144152|emb|CBI23279.3| (e_value=6e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FKZ3|LBD36_ARATH (e_value=2e-73) LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1;; (*TAIR) AT5G66870.1 (e_value=2e-74) | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 | chr5:26706621-26707562 FORWARD LENGTH=313;; (*ITAG) Solyc02g065150.1.1 (e_value=1e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:30880294-30881380 transcript_region:SL2.40ch02:30880294..30881380+ functional_description:"LOB domain family protein (AHRD V1 ***- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00057547g0005.1 protein AED:0.08 eAED:0.08 QI:115|0.8|0.66|1|0.8|0.83|6|0|603; (*GB) gi|224100445|ref|XP_002311879.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00019542g0005.1 protein AED:0.21 eAED:0.22 QI:0|1|0.9|1|0.55|0.4|10|0|549; (*GB) gi|224116208|ref|XP_002317239.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q10NX8|BGAL6_ORYSJ (e_value=1e-168) Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2;; (*TAIR) AT2G28470.2 (e_value=6e-165) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173146 REVERSE LENGTH=846;; (*ITAG) Solyc02g078950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38135936-38141941 transcript_region:SL2.40ch02:38135936..38141941- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9HYZ2_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00022792g0004.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.25|1|0.33|0.5|4|0|92 NbS00022792g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|84; (*GB) gi|224107243|ref|XP_002333545.1| (e_value=9e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P00052|CYC_VIGRR (e_value=3e-47) Cytochrome c OS=Vigna radiata var. radiata PE=1 SV=1;; (*TAIR) AT1G22840.1 (e_value=8e-47) | Symbols: CYTC-1, ATCYTC-A | CYTOCHROME C-1 | chr1:8079384-8080286 FORWARD LENGTH=114;; (*ITAG) Solyc11g042420.1.1 (e_value=2e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:31786354-31788004 transcript_region:SL2.40ch11:31786354..31788004+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00000972g0016.1 protein AED:0.27 eAED:0.27 QI:0|1|0.94|1|0.77|0.78|19|386|1094; (*GB) gi|359474892|ref|XP_002276432.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0WLC6|PP349_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2;; (*TAIR) AT4G34830.1 (e_value=0.0) | Symbols: MRL1 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16599976-16605994 REVERSE LENGTH=1089;; (*ITAG) Solyc01g111020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89187941-89202033 transcript_region:SL2.40ch01:89187941..89202033- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000972g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|96; (*GB) gi|225430953|ref|XP_002271562.1| (e_value=8e-39) PREDICTED: auxin-induced protein X10A-like [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-28) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18050.1 (e_value=4e-33) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5974691-5974963 REVERSE LENGTH=90;; (*ITAG) Solyc01g110880.1.1 (e_value=2e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89143221-89143517 transcript_region:SL2.40ch01:89143221..89143517- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00000972g0014.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0.5|0|3|0|220; (*GB) gi|309385617|gb|ADO66676.1| (e_value=3e-84) X intrinsic protein [Nicotiana sylvestris];; (*SWP) sp|O22588|TIP32_ARATH (e_value=1e-16) Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1;; (*TAIR) AT1G17810.1 (e_value=1e-17) | Symbols: BETA-TIP | beta-tonoplast intrinsic protein | chr1:6130209-6131442 FORWARD LENGTH=267;; (*ITAG) Solyc01g111010.2.1 (e_value=1e-96) genomic_reference:SL2.40ch01 gene_region:89184158-89188515 transcript_region:SL2.40ch01:89184158..89188515+ go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 *-*- Q40266_MESCR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0016020 NbS00000972g0006.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|225427874|ref|XP_002276412.1| (e_value=3e-42) PREDICTED: auxin-induced protein X10A [Vitis vinifera];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=2e-27) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=7e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc01g110830.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:89123930-89124416 transcript_region:SL2.40ch01:89123930..89124416- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00000972g0018.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|172; (*GB) gi|357473671|ref|XP_003607120.1| (e_value=4e-60) Auxin-induced protein-like protein [Medicago truncatula];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=4e-34) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=7e-35) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g111010.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:89184158-89188515 transcript_region:SL2.40ch01:89184158..89188515+ go_terms:GO:0016020 functional_description:"Aquaporin (AHRD V1 *-*- Q40266_MESCR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0016020 NbS00002505g0016.1 protein AED:0.06 eAED:0.06 QI:114|1|0.5|1|1|1|2|0|1526; (*GB) gi|255562960|ref|XP_002522485.1| (e_value=0.0) pattern formation protein, putative [Ricinus communis];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc05g013040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6150503-6155924 transcript_region:SL2.40ch05:6150503..6155924+ go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00002505g0023.1 protein AED:0.14 eAED:0.14 QI:349|1|1|1|0.75|1|5|159|278; (*GB) gi|255562956|ref|XP_002522483.1| (e_value=4e-118) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G13990.1 (e_value=6e-101) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4794810-4796476 FORWARD LENGTH=277;; (*ITAG) Solyc05g013060.2.1 (e_value=3e-148) genomic_reference:SL2.40ch05 gene_region:6160604-6164340 transcript_region:SL2.40ch05:6160604..6164340+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002505g0024.1 protein AED:0.15 eAED:0.16 QI:268|0.9|0.90|1|0.8|0.81|11|390|445; (*GB) gi|225462932|ref|XP_002266329.1| (e_value=0.0) PREDICTED: dual specificity protein kinase pyk1 isoform 1 [Vitis vinifera];; (*SWP) sp|P18160|SPLA_DICDI (e_value=1e-43) Dual specificity protein kinase splA OS=Dictyostelium discoideum GN=splA PE=1 SV=3;; (*TAIR) AT1G14000.1 (e_value=0.0) | Symbols: VIK | VH1-interacting kinase | chr1:4797606-4800043 FORWARD LENGTH=438;; (*ITAG) Solyc05g013070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6165906-6171636 transcript_region:SL2.40ch05:6165906..6171636+ go_terms:GO:0004708 functional_description:"Kinase family protein (AHRD V1 **** D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004708 NbS00002505g0006.1 protein AED:0.23 eAED:0.26 QI:178|0|0.5|1|0|0.5|2|0|441; (*GB) gi|225451255|ref|XP_002277010.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8BG32|PSD11_MOUSE (e_value=5e-101) 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3;; (*TAIR) AT1G29150.1 (e_value=0.0) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419;; (*ITAG) Solyc05g013030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6145882-6147153 transcript_region:SL2.40ch05:6145882..6147153+ go_terms:GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0004175 NbS00002505g0022.1 protein AED:0.32 eAED:0.33 QI:250|0.42|0.5|0.87|0.85|0.75|8|0|236; (*GB) gi|357487249|ref|XP_003613912.1| (e_value=6e-87) Vesicle transport v-SNARE [Medicago truncatula];; (*SWP) sp|Q9SEL5|VTI12_ARATH (e_value=3e-84) Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3;; (*TAIR) AT1G26670.1 (e_value=2e-85) | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport v-SNARE family protein | chr1:9216103-9217793 FORWARD LENGTH=222;; (*ITAG) Solyc05g013050.2.1 (e_value=1e-119) genomic_reference:SL2.40ch05 gene_region:6156617-6159887 transcript_region:SL2.40ch05:6156617..6159887+ go_terms:GO:0004872 functional_description:"Vesicle transport v-SNARE 11-like (AHRD V1 ***- Q307Y3_SOLTU); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0004872 NbS00002505g0020.1 protein AED:0.33 eAED:0.33 QI:257|1|1|1|0.75|0.6|5|233|214; (*GB) gi|255562952|ref|XP_002522481.1| (e_value=5e-111) Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis];; (*SWP) sp|Q9D1D4|TMEDA_MOUSE (e_value=6e-24) Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1;; (*TAIR) AT1G26690.1 (e_value=4e-101) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214;; (*ITAG) Solyc05g013130.2.1 (e_value=5e-143) genomic_reference:SL2.40ch05 gene_region:6223649-6227060 transcript_region:SL2.40ch05:6223649..6227060- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00023349g0002.1 protein AED:0.00 eAED:0.00 QI:303|1|0.5|1|1|1|2|0|39; (*GB) gi|121501708|gb|ABM55249.1| (e_value=1e-17) casein kinase [Beta vulgaris];; (*SWP) sp|P42158|KC1D_ARATH (e_value=2e-18) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G26100.1 (e_value=1e-19) | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227885-13230508 REVERSE LENGTH=450;; (*ITAG) Solyc07g040720.2.1 (e_value=8e-20) genomic_reference:SL2.40ch07 gene_region:46775853-46782305 transcript_region:SL2.40ch07:46775853..46782305+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00016785g0010.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|0|0.33|3|0|124; (*GB) gi|108773172|ref|YP_635682.1| (e_value=1e-25) Ycf2 [Solanum tuberosum];; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=4e-27) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=6e-25) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-27) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00028002g0001.1 protein AED:0.19 eAED:0.19 QI:19|0.95|0.92|1|0.79|0.72|25|3029|594; (*GB) gi|302142026|emb|CBI19229.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|B0C079|PDXH_ACAM1 (e_value=1e-73) Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acaryochloris marina (strain MBIC 11017) GN=pdxH PE=3 SV=1;; (*TAIR) AT5G49970.1 (e_value=0.0) | Symbols: ATPPOX, PDX3, PPOX | pyridoxin (pyrodoxamine) 5'-phosphate oxidase | chr5:20329213-20332900 FORWARD LENGTH=530;; (*ITAG) Solyc03g113780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57880479-57887886 transcript_region:SL2.40ch03:57880479..57887886- go_terms:GO:0004733 functional_description:"Pyridoxine/pyridoxamine 5&apos-phosphate oxidase (AHRD V1 *-** Q4C3B6_CROWT); contains Interpro domain(s) IPR000659 Pyridoxamine 5'-phosphate oxidase "; GO:0004733 NbS00028002g0012.1 protein AED:0.12 eAED:0.12 QI:10|0.88|1|1|0.77|0.9|10|330|412; (*GB) gi|255540801|ref|XP_002511465.1| (e_value=1e-116) E2F, putative [Ricinus communis];; (*SWP) sp|Q8LSZ4|E2FE_ARATH (e_value=6e-93) E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1;; (*TAIR) AT3G48160.2 (e_value=4e-94) | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:17783641-17785846 FORWARD LENGTH=403;; (*ITAG) Solyc03g113760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57871803-57874897 transcript_region:SL2.40ch03:57871803..57874897+ go_terms:GO:0003677 functional_description:"E2F transcription factor-like protein (AHRD V1 ***- Q9LFQ9_ARATH); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003677 NbS00019465g0014.1 protein AED:0.11 eAED:0.11 QI:0|0.33|0.25|1|0.66|0.5|4|0|344; (*GB) gi|297735617|emb|CBI18111.3| (e_value=2e-117) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G38320.1 (e_value=7e-103) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410;; (*ITAG) Solyc10g076400.1.1 (e_value=3e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58690371-58692715 transcript_region:SL2.40ch10:58690371..58692715- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 ***- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00019465g0009.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.66|0.83|0.8|0.66|6|104|407; (*GB) gi|224139262|ref|XP_002323026.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G01620.2 (e_value=0.0) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 35 | chr5:232882-234821 FORWARD LENGTH=449;; (*ITAG) Solyc10g085320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63867300-63871204 transcript_region:SL2.40ch10:63867300..63871204+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00019465g0012.1 protein AED:0.36 eAED:0.39 QI:0|0|0|0.5|0.66|0.5|4|0|258; (*GB) gi|224140485|ref|XP_002323613.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN63|BZR2_ARATH (e_value=3e-16) Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis thaliana GN=BZR2 PE=1 SV=1;; (*TAIR) AT1G19350.6 (e_value=2e-17) | Symbols: BES1, BZR2 | Brassinosteroid signalling positive regulator (BZR1) family protein | chr1:6688841-6690165 FORWARD LENGTH=335;; (*ITAG) Solyc10g076390.1.1 (e_value=8e-74) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58688296-58689320 transcript_region:SL2.40ch10:58688296..58689320+ functional_description:"BES1/BZR1 homolog protein 1 (AHRD V1 *--- BEH1_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; NbS00017749g0016.1 protein AED:0.07 eAED:0.07 QI:74|0.85|0.87|1|0.57|0.75|8|455|359; (*GB) gi|224121298|ref|XP_002318548.1| (e_value=7e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73840.1 (e_value=3e-43) | Symbols: ESP1 | hydroxyproline-rich glycoprotein family protein | chr1:27763937-27766328 REVERSE LENGTH=388;; (*ITAG) Solyc03g119460.2.1 (e_value=2e-84) genomic_reference:SL2.40ch03 gene_region:62122428-62126103 transcript_region:SL2.40ch03:62122428..62126103- functional_description:"Cleavage stimulation factor like protein (AHRD V1 ***- Q9M9G6_ARATH)"; NbS00017749g0017.1 protein AED:0.14 eAED:0.14 QI:0|0.9|0.90|1|0.7|0.63|11|946|819; (*GB) gi|297734212|emb|CBI15459.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LF10|CRS1_ARATH (e_value=6e-125) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=3 SV=2;; (*TAIR) AT3G18390.1 (e_value=0.0) | Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-containing protein | chr3:6313572-6317584 FORWARD LENGTH=848;; (*ITAG) Solyc03g119450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62114047-62121191 transcript_region:SL2.40ch03:62114047..62121191+ go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 **-- CRS1_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00017749g0018.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.76|1|0.91|0.92|13|0|804; (*GB) gi|255582757|ref|XP_002532155.1| (e_value=0.0) synaptotagmin, putative [Ricinus communis];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=4e-14) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT3G18370.1 (e_value=0.0) | Symbols: SYTF, ATSYTF, NTMC2TYPE3, NTMC2T3 | C2 domain-containing protein | chr3:6306362-6310256 FORWARD LENGTH=815;; (*ITAG) Solyc03g119440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62104673-62113351 transcript_region:SL2.40ch03:62104673..62113351+ functional_description:"Plant synaptotagmin (AHRD V1 **-- B9IE39_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00009708g0006.1 protein AED:0.28 eAED:0.28 QI:0|0.90|0.91|1|0.54|0.66|12|667|771; (*GB) gi|255545520|ref|XP_002513820.1| (e_value=0.0) Oxysterol-binding protein, putative [Ricinus communis];; (*SWP) sp|Q8L751|ORP1C_ARATH (e_value=0.0) Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1;; (*TAIR) AT4G08180.2 (e_value=0.0) | Symbols: ORP1C | OSBP(oxysterol binding protein)-related protein 1C | chr4:5169727-5173360 FORWARD LENGTH=813;; (*ITAG) Solyc11g013190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6093530-6101913 transcript_region:SL2.40ch11:6093530..6101913- functional_description:"Oxysterol-binding protein (AHRD V1 ***- A9ZM29_SOYBN); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; NbS00003455g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|1|1|3|394|147; (*ITAG) Solyc03g097080.2.1 (e_value=6e-27) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00059937g0008.1 protein AED:0.15 eAED:0.15 QI:170|0.91|0.84|1|0.75|0.69|13|0|700; (*GB) gi|113205145|gb|AAT40494.2| (e_value=0.0) Putative microtubule-associated protein, identical [Solanum demissum];; (*SWP) sp|Q9FHM4|MA653_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1;; (*TAIR) AT5G51600.1 (e_value=0.0) | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707;; (*ITAG) Solyc03g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1721232-1725024 transcript_region:SL2.40ch03:1721232..1725024+ go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00024136g0011.1 protein AED:0.23 eAED:0.23 QI:0|0.91|0.84|1|0.79|0.92|25|355|1152; (*GB) gi|359479902|ref|XP_002267361.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260666 [Vitis vinifera];; (*SWP) sp|Q6DDU8|FIGL1_XENLA (e_value=2e-25) Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1;; (*TAIR) AT1G02890.2 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:645372-651797 REVERSE LENGTH=1218;; (*ITAG) Solyc09g074950.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62243552-62258359 transcript_region:SL2.40ch09:62243552..62258359+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00024136g0012.1 protein AED:0.31 eAED:0.33 QI:0|0|0.16|0.83|0.6|0.66|6|0|494; (*GB) gi|147768838|emb|CAN75888.1| (e_value=6e-73) hypothetical protein VITISV_023640 [Vitis vinifera];; (*TAIR) AT4G02460.1 (e_value=4e-53) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00035773g0010.1 protein AED:0.09 eAED:0.09 QI:252|1|0.66|1|1|1|3|0|557; (*GB) gi|359484689|ref|XP_002268798.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera];; (*TAIR) AT1G80530.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc07g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2085682-2089699 transcript_region:SL2.40ch07:2085682..2089699+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00035773g0004.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|477; (*GB) gi|359484728|ref|XP_003633150.1| (e_value=2e-124) PREDICTED: uncharacterized protein LOC100854497 [Vitis vinifera];; (*TAIR) AT1G72270.2 (e_value=2e-75) | Symbols: | LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1). | chr1:27209890-27211122 REVERSE LENGTH=410;; (*ITAG) Solyc07g007360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2102542-2103882 transcript_region:SL2.40ch07:2102542..2103882- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00035773g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|255581271|ref|XP_002531447.1| (e_value=7e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G12462.1 (e_value=6e-43) | Symbols: | BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:5050583-5051585 REVERSE LENGTH=249;; (*ITAG) Solyc07g007350.1.1 (e_value=6e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2091112-2091879 transcript_region:SL2.40ch07:2091112..2091879- functional_description:"Jp18 (AHRD V1 *-*- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00005035g0005.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|1|1|3|0|345; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-23) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00016525g0007.1 protein AED:0.12 eAED:0.12 QI:229|1|1|1|0.76|0.92|14|110|1131; (*GB) gi|225448998|ref|XP_002271552.1| (e_value=0.0) PREDICTED: ABC transporter G family member 28-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9MAG3|AB24G_ARATH (e_value=0.0) ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=2;; (*TAIR) AT1G53390.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:19918197-19923579 FORWARD LENGTH=1109;; (*ITAG) Solyc04g025170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:18160314-18174876 transcript_region:SL2.40ch04:18160314..18174876- go_terms:GO:0005215 functional_description:"ABC transporter G family member 28 (AHRD V1 **** AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0005215 NbS00042550g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|225; (*GB) gi|356563364|ref|XP_003549934.1| (e_value=2e-41) PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max];; (*SWP) sp|O80338|EF101_ARATH (e_value=1e-40) Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1;; (*TAIR) AT5G47220.1 (e_value=9e-42) | Symbols: ATERF2, ATERF-2, ERF2 | ethylene responsive element binding factor 2 | chr5:19172023-19172754 REVERSE LENGTH=243;; (*ITAG) Solyc08g078180.1.1 (e_value=2e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00015231g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|466; (*GB) gi|224128468|ref|XP_002329011.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSD1|TMM_ARATH (e_value=0.0) Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1;; (*TAIR) AT1G80080.1 (e_value=0.0) | Symbols: TMM, AtRLP17 | Leucine-rich repeat (LRR) family protein | chr1:30128073-30129563 REVERSE LENGTH=496;; (*ITAG) Solyc12g042760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43638390-43639829 transcript_region:SL2.40ch12:43638390..43639829- go_terms:GO:0042802,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0042802,GO:0004675 NbS00015231g0009.1 protein AED:0.00 eAED:0.00 QI:243|1|1|1|0.66|0.75|4|71|436; (*GB) gi|224119076|ref|XP_002331319.1| (e_value=3e-34) f-box family protein [Populus trichocarpa];; (*SWP) sp|O23360|FBL93_ARATH (e_value=1e-17) Putative F-box/LRR-repeat protein At4g15060 OS=Arabidopsis thaliana GN=At4g15060 PE=4 SV=2;; (*TAIR) AT4G15060.1 (e_value=4e-18) | Symbols: | CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G55660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8599035-8601761 FORWARD LENGTH=539;; (*ITAG) Solyc07g064260.2.1 (e_value=6e-17) genomic_reference:SL2.40ch07 gene_region:63701666-63705606 transcript_region:SL2.40ch07:63701666..63705606+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 *-*- D7LTH7_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515 NbS00032102g0004.1 protein AED:0.18 eAED:0.18 QI:363|0.85|0.8|1|0.71|0.73|15|0|563; (*GB) gi|365222936|gb|AEW69820.1| (e_value=0.0) Hop-interacting protein THI135 [Solanum lycopersicum];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=7e-61) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT4G35780.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc02g083290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41311201-41321957 transcript_region:SL2.40ch02:41311201..41321957- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00035826g0008.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|0|0.5|4|0|280; (*GB) gi|152060653|gb|ABS29019.1| (e_value=6e-37) family 1 glycosyltransferase [Phaseolus vulgaris];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-37) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT4G01070.1 (e_value=7e-23) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc12g009910.1.1 (e_value=3e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3077787-3079182 transcript_region:SL2.40ch12:3077787..3079182+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00035826g0004.1 protein AED:0.25 eAED:0.25 QI:0|0|0.25|1|1|1|4|0|257; (*GB) gi|302144174|emb|CBI23301.3| (e_value=3e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65413|STP12_ARATH (e_value=1e-34) Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1;; (*TAIR) AT4G21480.1 (e_value=1e-35) | Symbols: STP12 | sugar transporter protein 12 | chr4:11433320-11435284 REVERSE LENGTH=502;; (*ITAG) Solyc00g009030.1.1 (e_value=6e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:8746969-8748442 transcript_region:SL2.40ch00:8746969..8748442- go_terms:GO:0055056 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 **** GTR12_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0055056 NbS00020259g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|1|0.33|0.25|4|0|1057; (*GB) gi|359489740|ref|XP_002264036.2| (e_value=0.0) PREDICTED: exportin-2-like [Vitis vinifera];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=0.0) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=0.0) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00050480g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0.5|1|1|1|2|0|196; (*GB) gi|357461999|ref|XP_003601281.1| (e_value=2e-65) Fibroblast growth factor receptor [Medicago truncatula];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=1e-24) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=7e-26) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc03g114310.2.1 (e_value=6e-80) genomic_reference:SL2.40ch03 gene_region:58374824-58379605 transcript_region:SL2.40ch03:58374824..58379605+ go_terms:GO:0004715 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 **** PTK6_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004715 NbS00017468g0014.1 protein AED:0.05 eAED:0.05 QI:170|0.75|0.6|1|1|1|5|611|225; (*GB) gi|388523067|gb|AFK49595.1| (e_value=3e-42) unknown [Medicago truncatula];; (*SWP) sp|Q84J70|DI193_ARATH (e_value=2e-35) Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1;; (*TAIR) AT3G05700.1 (e_value=1e-36) | Symbols: | Drought-responsive family protein | chr3:1682432-1684323 REVERSE LENGTH=223;; (*ITAG) Solyc01g065550.2.1 (e_value=3e-40) genomic_reference:SL2.40ch01 gene_region:64281108-64286492 transcript_region:SL2.40ch01:64281108..64286492+ go_terms:GO:0005515 functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 4 (AHRD V1 ***- DI194_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; GO:0005515 NbS00017468g0009.1 protein AED:0.39 eAED:0.39 QI:227|0.85|0.75|0.87|0.71|0.75|8|0|412; (*GB) gi|225437469|ref|XP_002269281.1| (e_value=2e-137) PREDICTED: uncharacterized protein LOC100243435 [Vitis vinifera];; (*TAIR) AT4G16100.1 (e_value=6e-78) | Symbols: | Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394;; (*ITAG) Solyc09g075500.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62710802-62716387 transcript_region:SL2.40ch09:62710802..62716387+ functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00055038g0013.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|1|1|2|248|674; (*GB) gi|255575479|ref|XP_002528641.1| (e_value=0.0) Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9M9C5|Y1680_ARATH (e_value=8e-106) Probable leucine-rich repeat receptor-like protein kinase At1g68400 OS=Arabidopsis thaliana GN=At1g68400 PE=2 SV=1;; (*TAIR) AT2G36570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15335583-15337725 FORWARD LENGTH=672;; (*ITAG) Solyc09g008860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2279079-2281897 transcript_region:SL2.40ch09:2279079..2281897- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00055038g0012.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|325516286|gb|ADZ24721.1| (e_value=0.0) geranylgeranyl pyrophosphate synthase 4 [Solanum pennellii];; (*SWP) sp|Q39108|GGR_ARATH (e_value=9e-136) Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana GN=GGR PE=1 SV=2;; (*TAIR) AT4G38460.1 (e_value=7e-137) | Symbols: GGR | geranylgeranyl reductase | chr4:17994849-17995974 FORWARD LENGTH=326;; (*ITAG) Solyc09g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2306179-2310339 transcript_region:SL2.40ch09:2306179..2310339- go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q0WUL9_ARATH); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00055038g0018.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|0|0.33|3|0|454; (*GB) gi|27529726|dbj|BAC53892.1| (e_value=0.0) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|P37122|C76A2_SOLME (e_value=0.0) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=3e-113) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc09g008910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2303994-2305720 transcript_region:SL2.40ch09:2303994..2305720+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00055038g0019.1 protein AED:0.19 eAED:0.22 QI:0|0.66|0.42|1|0.33|0.28|7|0|518; (*GB) gi|225441042|ref|XP_002277826.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264768 [Vitis vinifera];; (*SWP) sp|A1AQN4|PYRH_PELPD (e_value=6e-59) Uridylate kinase OS=Pelobacter propionicus (strain DSM 2379) GN=pyrH PE=3 SV=1;; (*TAIR) AT3G10030.2 (e_value=3e-180) | Symbols: | aspartate/glutamate/uridylate kinase family protein | chr3:3092618-3094831 REVERSE LENGTH=520;; (*ITAG) Solyc09g008850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2269350-2276218 transcript_region:SL2.40ch09:2269350..2276218+ go_terms:GO:0008652,GO:0006561 functional_description:"Uridylate kinase (AHRD V1 *-*- B6TC37_MAIZE); contains Interpro domain(s) IPR001048 Aspartate/glutamate/uridylate kinase "; GO:0008652,GO:0006561 NbC23308033g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|72; (*GB) gi|68342452|gb|AAY90124.1| (e_value=3e-30) histone 3 [Rheum australe];; (*SWP) sp|P68428|H32_WHEAT (e_value=1e-31) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=8e-33) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc12g056540.1.1 (e_value=6e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47844331-47844741 transcript_region:SL2.40ch12:47844331..47844741- go_terms:GO:0003677,GO:0000786 functional_description:"Histone H3 (AHRD V1 ***- Q5S265_CAMSI); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0003677,GO:0000786 NbS00027084g0001.1 protein AED:0.31 eAED:0.31 QI:530|0.71|0.87|1|0.71|0.87|8|235|156; (*GB) gi|225430760|ref|XP_002266788.1| (e_value=7e-37) PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q3U4I7|PYRD2_MOUSE (e_value=2e-16) Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2;; (*TAIR) AT5G49555.1 (e_value=2e-31) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:20107411-20110602 REVERSE LENGTH=556;; (*ITAG) Solyc02g085250.2.1 (e_value=9e-47) genomic_reference:SL2.40ch02 gene_region:42789344-42799166 transcript_region:SL2.40ch02:42789344..42799166- go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 **-- A6CBH0_9PLAN); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00010779g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|255545396|ref|XP_002513758.1| (e_value=1e-109) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|A8WGS4|TLCD2_DANRE (e_value=2e-11) TLC domain-containing protein 2 OS=Danio rerio GN=tlcd2 PE=2 SV=1;; (*TAIR) AT1G21790.1 (e_value=2e-103) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:7654357-7655691 FORWARD LENGTH=288;; (*ITAG) Solyc01g079770.2.1 (e_value=3e-124) genomic_reference:SL2.40ch01 gene_region:71425485-71426806 transcript_region:SL2.40ch01:71425485..71426806+ go_terms:GO:0006508,GO:0016021 functional_description:"TLC domain-containing protein 2 (AHRD V1 *-*- TLCD2_DANRE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0006508,GO:0016021 NbS00010779g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|194; (*GB) gi|351728015|ref|NP_001238716.1| (e_value=8e-76) uncharacterized protein LOC100306685 precursor [Glycine max];; (*SWP) sp|P59833|UGPI3_ARATH (e_value=3e-72) Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana GN=At5g19250 PE=1 SV=1;; (*TAIR) AT5G19250.1 (e_value=2e-73) | Symbols: | Glycoprotein membrane precursor GPI-anchored | chr5:6471983-6472808 FORWARD LENGTH=196;; (*ITAG) Solyc01g079780.2.1 (e_value=1e-99) genomic_reference:SL2.40ch01 gene_region:71427071-71430466 transcript_region:SL2.40ch01:71427071..71430466- functional_description:"Uncharacterized GPI-anchored protein At5g19250 (AHRD V1 ***- UGPI3_ARATH)"; NbS00058030g0003.1 protein AED:0.23 eAED:0.28 QI:0|0|0.33|1|0|0|3|94|691; (*GB) gi|297736528|emb|CBI25399.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SN39|PP320_ARATH (e_value=1e-100) Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1;; (*TAIR) AT4G18750.1 (e_value=1e-101) | Symbols: DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871;; (*ITAG) Solyc01g091610.1.1 (e_value=1e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00010662g0008.1 protein AED:0.13 eAED:0.13 QI:163|1|1|1|1|1|8|405|466; (*GB) gi|359485531|ref|XP_003633287.1| (e_value=0.0) PREDICTED: lipid-A-disaccharide synthase-like [Vitis vinifera];; (*SWP) sp|B6IST7|LPXB_RHOCS (e_value=5e-82) Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=lpxB PE=3 SV=1;; (*TAIR) AT2G04560.1 (e_value=2e-174) | Symbols: | transferases, transferring glycosyl groups | chr2:1590341-1592667 REVERSE LENGTH=460;; (*ITAG) Solyc07g049740.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57410329-57416117 transcript_region:SL2.40ch07:57410329..57416117+ go_terms:GO:0005515 functional_description:"Lipid-A-disaccharide synthase-like protein (AHRD V1 ***- D8QYK7_SELML); contains Interpro domain(s) IPR003835 Glycosyl transferase, family 19 "; GO:0005515 NbS00010662g0009.1 protein AED:0.34 eAED:0.35 QI:221|0|0.25|1|1|1|4|0|368; (*GB) gi|225447079|ref|XP_002270552.1| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100261856 [Vitis vinifera];; (*TAIR) AT4G20720.1 (e_value=5e-16) | Symbols: | dentin sialophosphoprotein-related | chr4:11105409-11107841 FORWARD LENGTH=729;; (*ITAG) Solyc07g049750.2.1 (e_value=6e-121) genomic_reference:SL2.40ch07 gene_region:57417080-57421894 transcript_region:SL2.40ch07:57417080..57421894+ functional_description:"GD3A (Fragment) (AHRD V1 *-*- Q6S477_ARATH)"; NbS00010662g0007.1 protein AED:0.49 eAED:0.85 QI:0|0|0|0.33|0.8|0.66|6|0|175; (*GB) gi|325190888|emb|CCA25373.1| (e_value=4e-19) cell differentiation protein rcd1 putative [Albugo laibachii Nc14];; (*SWP) sp|Q92368|RCD1_SCHPO (e_value=5e-16) Cell differentiation protein rcd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rcd1 PE=2 SV=1;; (*TAIR) AT3G20800.1 (e_value=4e-19) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc07g051810.1.1 (e_value=7e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57621207-57630245 transcript_region:SL2.40ch07:57621207..57630245- go_terms:GO:0042802 functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- Q5CJU4_CRYHO); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; GO:0042802 NbS00009642g0018.1 protein AED:0.20 eAED:0.20 QI:62|0.88|0.9|1|0.88|0.8|10|223|898; (*GB) gi|32454712|gb|AAP83137.1| (e_value=0.0) lipoxygenase, partial [Nicotiana attenuata];; (*SWP) sp|O24370|LOX21_SOLTU (e_value=0.0) Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1;; (*TAIR) AT3G45140.1 (e_value=0.0) | Symbols: LOX2, ATLOX2 | lipoxygenase 2 | chr3:16525437-16529233 FORWARD LENGTH=896;; (*ITAG) Solyc01g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1113718-1123928 transcript_region:SL2.40ch01:1113718..1123928+ go_terms:GO:0005515,GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q96573_SOLLC); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0005515,GO:0016165 NbS00009642g0019.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.75|0.33|0.25|4|0|519; (*GB) gi|109676362|gb|ABG37663.1| (e_value=1e-174) CCHC-type integrase [Populus trichocarpa];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=9e-130) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=2e-139) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1099482-1102806 transcript_region:SL2.40ch01:1099482..1102806+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00009642g0002.1 protein AED:0.15 eAED:0.19 QI:0|0|0|1|1|1|2|0|728; (*GB) gi|15230882|ref|NP_191347.1| (e_value=0.0) calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q6DN14|MCTP1_HUMAN (e_value=3e-14) Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2;; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc01g006620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1217128-1219478 transcript_region:SL2.40ch01:1217128..1219478- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00009642g0021.1 protein AED:0.30 eAED:0.34 QI:0|0.5|0.2|1|0|0.4|5|0|121; (*GB) gi|147825302|emb|CAN75498.1| (e_value=2e-48) hypothetical protein VITISV_020272 [Vitis vinifera];; (*TAIR) AT3G20790.1 (e_value=8e-41) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:7268802-7271099 FORWARD LENGTH=355;; (*ITAG) Solyc01g006630.2.1 (e_value=3e-62) genomic_reference:SL2.40ch01 gene_region:1223346-1230598 transcript_region:SL2.40ch01:1223346..1230598- go_terms:GO:0008152,GO:0016491 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7KZW5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491 NbS00009642g0020.1 protein AED:0.37 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|79; (*GB) gi|297746378|emb|CBI16434.3| (e_value=2e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G20790.1 (e_value=5e-15) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:7268802-7271099 FORWARD LENGTH=355;; (*ITAG) Solyc01g006630.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:1223346-1230598 transcript_region:SL2.40ch01:1223346..1230598- go_terms:GO:0008152,GO:0016491 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7KZW5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491 NbS00012749g0109.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.25|0.75|0.66|0.75|4|0|346 NbS00017675g0024.1 protein AED:0.17 eAED:0.17 QI:0|0.9|0.80|1|0.65|0.66|21|0|980; (*GB) gi|225441793|ref|XP_002277870.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255472 [Vitis vinifera];; (*SWP) sp|Q5SPP5|EFR3B_DANRE (e_value=5e-17) Protein EFR3 homolog B OS=Danio rerio GN=efr3b PE=3 SV=2;; (*TAIR) AT2G41830.1 (e_value=0.0) | Symbols: | Uncharacterized protein | chr2:17450431-17456453 REVERSE LENGTH=1025;; (*ITAG) Solyc04g015580.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5867467-5881157 transcript_region:SL2.40ch04:5867467..5881157+ functional_description:"Protein EFR3 homolog B (AHRD V1 *--- EFR3B_DANRE)"; NbS00017675g0018.1 protein AED:0.22 eAED:0.23 QI:3|0.44|0.2|1|0.77|0.8|10|0|714; (*GB) gi|356565758|ref|XP_003551104.1| (e_value=0.0) PREDICTED: lysosomal beta glucosidase-like [Glycine max];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=2e-50) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G04885.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc04g015560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5817557-5825924 transcript_region:SL2.40ch04:5817557..5825924+ go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbS00017675g0019.1 protein AED:0.30 eAED:0.32 QI:0|1|0.5|1|0|1|2|0|318; (*GB) gi|225441795|ref|XP_002283838.1| (e_value=1e-132) PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VZ42|SAP11_ARATH (e_value=5e-112) Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 OS=Arabidopsis thaliana GN=SAP11 PE=2 SV=1;; (*TAIR) AT2G41835.1 (e_value=4e-113) | Symbols: | zinc finger (C2H2 type, AN1-like) family protein | chr2:17458020-17459414 REVERSE LENGTH=279;; (*ITAG) Solyc04g015570.2.1 (e_value=3e-170) genomic_reference:SL2.40ch04 gene_region:5861018-5864556 transcript_region:SL2.40ch04:5861018..5864556+ go_terms:GO:0003676,GO:0005515 functional_description:"AN1-type zinc finger protein 2B (AHRD V1 ***- B4FVR8_MAIZE); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0003676,GO:0005515 NbS00017675g0015.1 protein AED:0.79 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|94 NbS00027830g0007.1 protein AED:0.12 eAED:0.12 QI:203|1|1|1|1|1|3|355|387; (*GB) gi|296085075|emb|CBI28490.3| (e_value=2e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G03780.1 (e_value=2e-15) | Symbols: TRFL10 | TRF-like 10 | chr5:999266-1000947 REVERSE LENGTH=420;; (*ITAG) Solyc07g056120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61307086-61310133 transcript_region:SL2.40ch07:61307086..61310133+ go_terms:GO:0003677,GO:0008270,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9LZR1_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677,GO:0008270,GO:0045449 NbS00018783g0006.1 protein AED:0.29 eAED:0.29 QI:225|1|0.88|1|0.87|0.77|9|0|417; (*GB) gi|225430151|ref|XP_002284747.1| (e_value=0.0) PREDICTED: 26S protease regulatory subunit 8 homolog A [Vitis vinifera];; (*SWP) sp|Q9C5U3|PRS8A_ARATH (e_value=0.0) 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1;; (*TAIR) AT5G19990.1 (e_value=0.0) | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A ATPase 6A | chr5:6752144-6754918 FORWARD LENGTH=419;; (*ITAG) Solyc05g018570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:22252361-22260280 transcript_region:SL2.40ch05:22252361..22260280- go_terms:GO:0005524,GO:0005737,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog A (AHRD V1 ***- PRS8A_ARATH); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0005737,GO:0017111 NbS00018783g0012.1 protein AED:0.42 eAED:0.46 QI:89|0|0.33|1|0|0.33|3|0|79; (*GB) gi|147765769|emb|CAN68980.1| (e_value=5e-26) hypothetical protein VITISV_004150 [Vitis vinifera];; (*SWP) sp|Q9LT96|Y5977_ARATH (e_value=4e-26) Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1;; (*TAIR) AT5G49760.1 (e_value=1e-27) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:20216679-20221052 FORWARD LENGTH=953;; (*ITAG) Solyc01g102700.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:83194913-83202439 transcript_region:SL2.40ch01:83194913..83202439+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00046600g0003.1 protein AED:0.34 eAED:0.34 QI:81|0.87|0.55|1|0.62|0.66|9|171|296; (*GB) gi|359476346|ref|XP_002281160.2| (e_value=8e-50) PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera];; (*TAIR) AT5G11640.1 (e_value=7e-38) | Symbols: | Thioredoxin superfamily protein | chr5:3742008-3743703 FORWARD LENGTH=253;; (*ITAG) Solyc12g095820.1.1 (e_value=2e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63278066-63285423 transcript_region:SL2.40ch12:63278066..63285423+ functional_description:"Thioredoxin-related transmembrane protein 2 (AHRD V1 ***- TMX2_XENTR); contains Interpro domain(s) IPR012336 Thioredoxin-like fold "; NbS00028501g0007.1 protein AED:0.09 eAED:0.12 QI:60|0.83|0.71|1|1|1|7|0|564; (*GB) gi|225441575|ref|XP_002276712.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100241826 [Vitis vinifera];; (*TAIR) AT3G58480.1 (e_value=2e-171) | Symbols: | calmodulin-binding family protein | chr3:21629341-21631853 FORWARD LENGTH=575;; (*ITAG) Solyc10g078650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59714870-59717884 transcript_region:SL2.40ch10:59714870..59717884- functional_description:"Calmodulin-binding protein (AHRD V1 *--- A2I5F3_BETVU)"; NbS00060449g0007.1 protein AED:0.19 eAED:0.19 QI:0|0|0.33|0.66|0.5|0.33|3|0|495; (*GB) gi|359478573|ref|XP_002279931.2| (e_value=5e-178) PREDICTED: uncharacterized protein LOC100265690 [Vitis vinifera];; (*TAIR) AT5G58960.3 (e_value=1e-159) | Symbols: GIL1 | Plant protein of unknown function (DUF641) | chr5:23806906-23808360 FORWARD LENGTH=484;; (*ITAG) Solyc02g083110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41207684-41209114 transcript_region:SL2.40ch02:41207684..41209114- functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAS0_9ROSI); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00061498g0003.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0|0|2|0|438; (*GB) gi|356575409|ref|XP_003555834.1| (e_value=6e-65) PREDICTED: E3 ubiquitin-protein ligase CIP8-like [Glycine max];; (*SWP) sp|Q9SPL2|CIP8_ARATH (e_value=8e-52) E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1;; (*TAIR) AT5G64920.1 (e_value=6e-53) | Symbols: CIP8 | COP1-interacting protein 8 | chr5:25944338-25945342 REVERSE LENGTH=334;; (*ITAG) Solyc09g074460.1.1 (e_value=3e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:61757436-61758569 transcript_region:SL2.40ch09:61757436..61758569+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003450g0004.1 protein AED:0.09 eAED:0.09 QI:191|1|1|1|1|1|5|133|359; (*GB) gi|156763848|emb|CAO99126.1| (e_value=0.0) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=1e-165) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G39330.1 (e_value=2e-135) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc11g011330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00014210g0014.1 protein AED:0.32 eAED:0.36 QI:0|0.66|0.53|1|0.75|0.76|13|0|872; (*GB) gi|365927832|gb|AEX07776.1| (e_value=0.0) calmodulin-binding transcription factor SR3 [Solanum lycopersicum];; (*SWP) sp|O23463|CMTA5_ARATH (e_value=0.0) Calmodulin-binding transcription activator 5 OS=Arabidopsis thaliana GN=CMTA5 PE=2 SV=2;; (*TAIR) AT4G16150.1 (e_value=0.0) | Symbols: | calmodulin binding;transcription regulators | chr4:9148225-9153048 FORWARD LENGTH=923;; (*ITAG) Solyc01g060140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62496397-62500380 transcript_region:SL2.40ch01:62496397..62500380- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 5 (AHRD V1 **** D7MA72_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016563 NbS00014210g0013.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|567; (*GB) gi|225431902|ref|XP_002276533.1| (e_value=0.0) PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera];; (*SWP) sp|Q8VZF1|AEE7_ARATH (e_value=0.0) Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1;; (*TAIR) AT3G16910.1 (e_value=0.0) | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | chr3:5773231-5775411 REVERSE LENGTH=569;; (*ITAG) Solyc01g060180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62560881-62565105 transcript_region:SL2.40ch01:62560881..62565105- go_terms:GO:0008152 functional_description:"AMP-dependent synthetase and ligase (AHRD V1 ***- A1U2F4_MARAV); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00008931g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.71|1|1|1|7|0|908; (*GB) gi|224068671|ref|XP_002302796.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q76PD2|YJ01_SCHPO (e_value=3e-40) LIM domain and RING finger protein C1223.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2;; (*TAIR) AT3G62240.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:23033592-23036653 REVERSE LENGTH=812;; (*ITAG) Solyc01g068390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69990846-69996128 transcript_region:SL2.40ch01:69990846..69996128- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LSV3_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00042156g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|180; (*GB) gi|225423987|ref|XP_002282662.1| (e_value=4e-60) PREDICTED: uncharacterized protein LOC100266248 [Vitis vinifera];; (*TAIR) AT1G68490.1 (e_value=1e-46) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc05g009360.2.1 (e_value=6e-88) genomic_reference:SL2.40ch05 gene_region:3502364-3504879 transcript_region:SL2.40ch05:3502364..3504879- functional_description:"Unknown Protein (AHRD V1)"; NbS00013306g0001.1 protein AED:0.38 eAED:0.38 QI:249|0.5|1|1|0.5|0.33|3|187|200; (*GB) gi|297738009|emb|CBI27210.3| (e_value=7e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=6e-59) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=5e-60) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=1e-67) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00006622g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0.66|3|0|131; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-25) hypothetical protein [Nicotiana tabacum]; NbS00044529g0005.1 protein AED:0.11 eAED:0.15 QI:0|1|0.5|1|1|1|4|0|493; (*GB) gi|224065334|ref|XP_002301779.1| (e_value=2e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=7e-134) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT4G13190.1 (e_value=5e-137) | Symbols: | Protein kinase superfamily protein | chr4:7659435-7661106 REVERSE LENGTH=389;; (*ITAG) Solyc05g055860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64477273-64480886 transcript_region:SL2.40ch05:64477273..64480886- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00044529g0002.1 protein AED:0.15 eAED:0.15 QI:187|0.66|0.5|1|1|1|4|500|262; (*GB) gi|255567634|ref|XP_002524796.1| (e_value=9e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G48070.2 (e_value=1e-40) | Symbols: RPH1 | resistance to phytophthora 1 | chr2:19662863-19663773 FORWARD LENGTH=197;; (*ITAG) Solyc05g055850.2.1 (e_value=3e-79) genomic_reference:SL2.40ch05 gene_region:64473894-64476790 transcript_region:SL2.40ch05:64473894..64476790+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q011I1_OSTTA)"; NbS00055744g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|71 NbS00055744g0005.1 protein AED:0.18 eAED:0.20 QI:0|0.8|0.72|1|1|1|11|0|541; (*GB) gi|1743354|emb|CAA71003.1| (e_value=0.0) aldehyde dehydrogenase (NAD+) [Nicotiana tabacum];; (*SWP) sp|Q8S528|AL2B7_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2;; (*TAIR) AT1G23800.1 (e_value=0.0) | Symbols: ALDH2B7, ALDH2B | aldehyde dehydrogenase 2B7 | chr1:8412238-8414804 REVERSE LENGTH=534;; (*ITAG) Solyc05g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:514498-518886 transcript_region:SL2.40ch05:514498..518886- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 **** Q84V96_LOTCO); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00014888g0005.1 protein AED:0.31 eAED:0.31 QI:4|0.6|0.5|0.83|1|0.83|6|0|355; (*GB) gi|2501647|sp|Q42967.1|DCUP_TOBAC (e_value=0.0) RecName: Full=Uroporphyrinogen decarboxylase, chloroplastic; Short=UPD; Short=URO-D; Flags: Precursor;; (*SWP) sp|Q42967|DCUP_TOBAC (e_value=0.0) Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1;; (*TAIR) AT2G40490.1 (e_value=0.0) | Symbols: HEME2 | Uroporphyrinogen decarboxylase | chr2:16912961-16914988 FORWARD LENGTH=394;; (*ITAG) Solyc06g048730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28105228-28112767 transcript_region:SL2.40ch06:28105228..28112767- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** C6TEE8_SOYBN); contains Interpro domain(s) IPR000257 Uroporphyrinogen decarboxylase (URO-D) "; GO:0004853,GO:0042803 NbS00028941g0005.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|516; (*GB) gi|255553335|ref|XP_002517709.1| (e_value=1e-178) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=1e-171) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=1e-172) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=6e-177) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00038195g0003.1 protein AED:0.04 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|844; (*GB) gi|70780055|gb|AAZ08351.1| (e_value=0.0) ethylene overproducer-like 1 [Solanum lycopersicum];; (*SWP) sp|Q9ZQX6|ETOL1_ARATH (e_value=0.0) ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1;; (*TAIR) AT4G02680.1 (e_value=0.0) | Symbols: EOL1 | ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888;; (*ITAG) Solyc09g065640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59410288-59416571 transcript_region:SL2.40ch09:59410288..59416571+ go_terms:GO:0005515 functional_description:"Os11g0585900 protein (Fragment) (AHRD V1 **-- Q0IRY6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00004744g0009.1 protein AED:0.29 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|143; (*GB) gi|356575430|ref|XP_003555844.1| (e_value=2e-42) PREDICTED: sugar transport protein 10-like [Glycine max];; (*SWP) sp|O65413|STP12_ARATH (e_value=2e-41) Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1;; (*TAIR) AT4G21480.1 (e_value=2e-42) | Symbols: STP12 | sugar transporter protein 12 | chr4:11433320-11435284 REVERSE LENGTH=502;; (*ITAG) Solyc00g009030.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:8746969-8748442 transcript_region:SL2.40ch00:8746969..8748442- go_terms:GO:0055056 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 **** GTR12_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0055056 NbS00004744g0015.1 protein AED:0.07 eAED:0.07 QI:388|0.88|0.88|1|0.76|0.66|18|316|772; (*GB) gi|225461150|ref|XP_002282749.1| (e_value=0.0) PREDICTED: kinesin-3 [Vitis vinifera];; (*SWP) sp|Q07970|ATK1_ARATH (e_value=0.0) Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1;; (*TAIR) AT4G21270.1 (e_value=0.0) | Symbols: ATK1, KATA, KATAP | kinesin 1 | chr4:11329579-11333884 REVERSE LENGTH=793;; (*ITAG) Solyc12g005250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:156785-162394 transcript_region:SL2.40ch12:156785..162394- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9M0X6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00004744g0017.1 protein AED:0.07 eAED:0.12 QI:0|0.25|0.2|0.8|0.75|0.4|5|0|283; (*GB) gi|224124192|ref|XP_002319268.1| (e_value=2e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|P14721|DFRA_ANTMA (e_value=2e-31) Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1;; (*TAIR) AT4G27250.1 (e_value=4e-72) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:13642803-13644425 REVERSE LENGTH=354;; (*ITAG) Solyc12g005350.1.1 (e_value=3e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:216225-218423 transcript_region:SL2.40ch12:216225..218423+ go_terms:GO:0044237,GO:0008152 functional_description:"Dihydroflavonol-4-reductase (AHRD V1 ***- B6TUD3_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00004744g0013.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|2|316|133; (*GB) gi|118484619|gb|ABK94182.1| (e_value=3e-58) unknown [Populus trichocarpa];; (*SWP) sp|Q9LHQ5|H2A2_ARATH (e_value=4e-57) Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1;; (*TAIR) AT3G20670.1 (e_value=3e-58) | Symbols: HTA13 | histone H2A 13 | chr3:7229472-7229963 FORWARD LENGTH=132;; (*ITAG) Solyc12g005270.1.1 (e_value=3e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00004744g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|225461142|ref|XP_002280047.1| (e_value=7e-123) PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera];; (*TAIR) AT3G20680.1 (e_value=4e-95) | Symbols: | Domain of unknown function (DUF1995) | chr3:7230147-7231163 REVERSE LENGTH=338;; (*ITAG) Solyc12g005240.1.1 (e_value=7e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:155128-156093 transcript_region:SL2.40ch12:155128..156093- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018962 Domain of unknown function DUF1995 "; NbS00019957g0010.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0.33|3|0|228; (*GB) gi|147839230|emb|CAN65692.1| (e_value=1e-21) hypothetical protein VITISV_022468 [Vitis vinifera];; (*SWP) sp|Q9ZVR5|PP2B2_ARATH (e_value=4e-13) Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=2;; (*TAIR) AT1G80110.1 (e_value=2e-16) | Symbols: ATPP2-B11, PP2-B11 | phloem protein 2-B11 | chr1:30135466-30136767 FORWARD LENGTH=257;; (*ITAG) Solyc12g044930.1.1 (e_value=9e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45731804-45733125 transcript_region:SL2.40ch12:45731804..45733125+ functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019957g0012.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0.25|0.2|5|0|449; (*GB) gi|225459979|ref|XP_002267546.1| (e_value=2e-103) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=1e-54) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT2G33060.1 (e_value=2e-70) | Symbols: AtRLP27, RLP27 | receptor like protein 27 | chr2:14025661-14028087 FORWARD LENGTH=808;; (*ITAG) Solyc07g005150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00019957g0011.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0.33|3|0|462; (*GB) gi|359493544|ref|XP_002267509.2| (e_value=4e-67) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=7e-21) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT1G45616.1 (e_value=3e-42) | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994;; (*ITAG) Solyc07g005150.1.1 (e_value=2e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00016562g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|0.5|2|0|185 NbS00057756g0005.1 protein AED:0.26 eAED:0.26 QI:371|0.72|0.83|1|0.72|0.75|12|305|466; (*GB) gi|357475017|ref|XP_003607794.1| (e_value=0.0) Beta-glucosidase [Medicago truncatula];; (*SWP) sp|Q9FZE0|BGL40_ARATH (e_value=0.0) Beta-glucosidase 40 OS=Arabidopsis thaliana GN=BGLU40 PE=2 SV=1;; (*TAIR) AT1G26560.1 (e_value=0.0) | Symbols: BGLU40 | beta glucosidase 40 | chr1:9178513-9181726 FORWARD LENGTH=510;; (*ITAG) Solyc01g010390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5254174-5260994 transcript_region:SL2.40ch01:5254174..5260994+ go_terms:GO:0005975 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00016865g0003.1 protein AED:0.27 eAED:0.27 QI:209|1|1|1|0.83|0.71|7|672|232; (*GB) gi|255556802|ref|XP_002519434.1| (e_value=2e-69) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SCP9|VP371_ARATH (e_value=2e-62) Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1;; (*TAIR) AT3G53120.1 (e_value=2e-63) | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r)) protein | chr3:19690729-19692490 REVERSE LENGTH=217;; (*ITAG) Solyc10g085810.1.1 (e_value=7e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64214595-64218774 transcript_region:SL2.40ch10:64214595..64218774+ functional_description:"Vacuolar protein-sorting-associated protein 37 homolog 1 (AHRD V1 **-- VP371_ARATH); contains Interpro domain(s) IPR009851 Modifier of rudimentary, Modr "; NbS00003413g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|0.33|0.14|7|443|584; (*GB) gi|388490814|gb|AFK33473.1| (e_value=7e-94) unknown [Medicago truncatula];; (*TAIR) AT4G26190.1 (e_value=2e-60) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:13262473-13266282 REVERSE LENGTH=1057;; (*ITAG) Solyc02g065790.2.1 (e_value=1e-169) genomic_reference:SL2.40ch02 gene_region:31507421-31512311 transcript_region:SL2.40ch02:31507421..31512311+ functional_description:"Phosphoprotein phosphatase (AHRD V1 *--- B6K603_SCHJY); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00003413g0012.1 protein AED:0.16 eAED:0.16 QI:155|1|1|1|0.66|0.7|10|108|411; (*GB) gi|296081372|emb|CBI16805.3| (e_value=2e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13030.1 (e_value=4e-41) | Symbols: | sphere organelles protein-related | chr1:4444284-4447278 REVERSE LENGTH=608;; (*ITAG) Solyc02g067090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31897609-31906793 transcript_region:SL2.40ch02:31897609..31906793+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010267g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.81|0.82|0.95|0.77|0.82|23|351|1475; (*GB) gi|356527738|ref|XP_003532465.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100797714 [Glycine max];; (*TAIR) AT5G11700.1 (e_value=0.0) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1419;; (*ITAG) Solyc05g026080.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:39724055-39730748 transcript_region:SL2.40ch05:39724055..39730748+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M9M4_ARALY)"; NbS00028184g0005.1 protein AED:0.34 eAED:0.34 QI:206|1|1|1|0.4|0.5|6|217|168; (*GB) gi|225440672|ref|XP_002279805.1| (e_value=1e-77) PREDICTED: mitochondrial inner membrane protease subunit 2 [Vitis vinifera];; (*SWP) sp|Q96T52|IMP2L_HUMAN (e_value=3e-32) Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1;; (*TAIR) AT3G08980.1 (e_value=3e-62) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr3:2741279-2742375 FORWARD LENGTH=154;; (*ITAG) Solyc09g014510.2.1 (e_value=2e-113) genomic_reference:SL2.40ch09 gene_region:6142067-6145065 transcript_region:SL2.40ch09:6142067..6145065- go_terms:GO:0005515,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 2 (AHRD V1 ***- B6UIG2_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0005515,GO:0004222 NbS00028184g0004.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.2|1|0|0|5|0|129; (*GB) gi|225440670|ref|XP_002279771.1| (e_value=3e-44) PREDICTED: protein yippee-like [Vitis vinifera];; (*SWP) sp|P59234|YIPL_SOLTU (e_value=7e-41) Protein yippee-like OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G08990.2 (e_value=2e-41) | Symbols: | Yippee family putative zinc-binding protein | chr3:2743590-2744709 FORWARD LENGTH=128;; (*ITAG) Solyc09g014500.2.1 (e_value=7e-56) genomic_reference:SL2.40ch09 gene_region:6131688-6136473 transcript_region:SL2.40ch09:6131688..6136473- go_terms:GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0008270 NbS00036002g0001.1 protein AED:0.35 eAED:0.40 QI:0|0|0|0.5|1|1|4|0|376; (*GB) gi|225444744|ref|XP_002278128.1| (e_value=6e-105) PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Vitis vinifera];; (*SWP) sp|Q9LTV8|PP224_ARATH (e_value=9e-42) Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1;; (*TAIR) AT3G12770.1 (e_value=7e-43) | Symbols: MEF22 | mitochondrial editing factor 22 | chr3:4057027-4059193 REVERSE LENGTH=694;; (*ITAG) Solyc04g076330.1.1 (e_value=5e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:58837499-58839319 transcript_region:SL2.40ch04:58837499..58839319+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00050890g0001.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|163 NbS00023247g0004.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.25|4|0|256; (*GB) gi|224110962|ref|XP_002315697.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT1G59650.1 (e_value=3e-37) | Symbols: CW14 | Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492;; (*ITAG) Solyc05g006660.2.1 (e_value=2e-79) genomic_reference:SL2.40ch05 gene_region:1331164-1338948 transcript_region:SL2.40ch05:1331164..1338948+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00054320g0007.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-35) hypothetical protein [Nicotiana tabacum]; NbS00002317g0009.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|489; (*GB) gi|147814819|emb|CAN74746.1| (e_value=1e-176) hypothetical protein VITISV_012024 [Vitis vinifera];; (*SWP) sp|Q5XET4|PP142_ARATH (e_value=1e-152) Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana GN=EMB975 PE=2 SV=1;; (*TAIR) AT2G01860.1 (e_value=1e-153) | Symbols: EMB975 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:388283-389743 FORWARD LENGTH=486;; (*ITAG) Solyc02g070010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34384667-34386037 transcript_region:SL2.40ch02:34384667..34386037- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LPW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002317g0003.1 protein AED:0.05 eAED:0.09 QI:0|-1|0|1|-1|1|1|68|591; (*GB) gi|297795735|ref|XP_002865752.1| (e_value=4e-169) UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LTA3|U91C1_ARATH (e_value=4e-170) UDP-glycosyltransferase 91C1 OS=Arabidopsis thaliana GN=UGT91C1 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=3e-171) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc02g070020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34387711-34389150 transcript_region:SL2.40ch02:34387711..34389150- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00002317g0008.1 protein AED:0.14 eAED:0.14 QI:54|0.87|0.66|1|1|1|9|0|975; (*GB) gi|359483694|ref|XP_002264328.2| (e_value=0.0) PREDICTED: small RNA 2'-O-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9C5Q8|HEN1_ARATH (e_value=0.0) Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1;; (*TAIR) AT4G20910.2 (e_value=0.0) | Symbols: HEN1 | double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942;; (*ITAG) Solyc02g070030.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34394425-34403033 transcript_region:SL2.40ch02:34394425..34403033- go_terms:GO:0005622 functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D3Q922_STANL); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0005622 NbS00002317g0022.1 protein AED:0.11 eAED:0.12 QI:0|0.4|0.16|1|0.6|0.66|6|333|1053; (*GB) gi|356533075|ref|XP_003535094.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20940-like [Glycine max];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g070000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34380105-34384384 transcript_region:SL2.40ch02:34380105..34384384+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002317g0006.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|510; (*GB) gi|297740842|emb|CBI31024.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SA72|Y1357_ARATH (e_value=0.0) Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1;; (*TAIR) AT1G30570.1 (e_value=0.0) | Symbols: HERK2 | hercules receptor kinase 2 | chr1:10828933-10831482 FORWARD LENGTH=849;; (*ITAG) Solyc02g069970.2.1 (e_value=3e-177) genomic_reference:SL2.40ch02 gene_region:34336372-34340608 transcript_region:SL2.40ch02:34336372..34340608+ go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00002317g0007.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|255564379|ref|XP_002523186.1| (e_value=8e-139) kinase, putative [Ricinus communis];; (*SWP) sp|Q9SA72|Y1357_ARATH (e_value=1e-121) Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1;; (*TAIR) AT1G30570.1 (e_value=8e-123) | Symbols: HERK2 | hercules receptor kinase 2 | chr1:10828933-10831482 FORWARD LENGTH=849;; (*ITAG) Solyc02g069970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34336372-34340608 transcript_region:SL2.40ch02:34336372..34340608+ go_terms:GO:0016301 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0016301 NbS00001024g0006.1 protein AED:0.24 eAED:0.26 QI:463|0.81|0.91|1|0.72|0.75|12|396|316; (*GB) gi|357485823|ref|XP_003613199.1| (e_value=0.0) ATP-citrate synthase [Medicago truncatula];; (*SWP) sp|O22718|ACLA2_ARATH (e_value=0.0) ATP-citrate synthase alpha chain protein 2 OS=Arabidopsis thaliana GN=ACLA-2 PE=2 SV=1;; (*TAIR) AT1G60810.1 (e_value=0.0) | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388691-22390993 REVERSE LENGTH=423;; (*ITAG) Solyc05g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:141208-145022 transcript_region:SL2.40ch05:141208..145022- go_terms:GO:0003878 functional_description:"ATP-citrate lyase A-2 (AHRD V1 **** D7KWP3_ARALY); contains Interpro domain(s) IPR016102 Succinyl-CoA synthetase-like "; GO:0003878 NbS00016708g0006.1 protein AED:0.11 eAED:0.12 QI:170|0.71|0.62|1|0.57|0.37|8|312|662; (*GB) gi|224117172|ref|XP_002317497.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUQ5|UBC25_ARATH (e_value=8e-37) Probable ubiquitin-conjugating enzyme E2 25 OS=Arabidopsis thaliana GN=UBC25 PE=2 SV=1;; (*TAIR) AT3G15355.1 (e_value=6e-38) | Symbols: UBC25, PFU1 | ubiquitin-conjugating enzyme 25 | chr3:5183858-5186669 FORWARD LENGTH=609;; (*ITAG) Solyc12g013820.1.1 (e_value=1e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4603477-4609783 transcript_region:SL2.40ch12:4603477..4609783- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme 23 (AHRD V1 *-*- D7L425_ARALY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00030235g0005.1 protein AED:0.07 eAED:0.08 QI:11|0.8|0.45|1|1|1|11|0|1787; (*GB) gi|359489318|ref|XP_002269466.2| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 4G-like [Vitis vinifera];; (*SWP) sp|Q76E23|IF4G1_ARATH (e_value=0.0) Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2;; (*TAIR) AT3G60240.2 (e_value=0.0) | Symbols: EIF4G, CUM2 | eukaryotic translation initiation factor 4G | chr3:22261842-22268295 FORWARD LENGTH=1723;; (*ITAG) Solyc01g088700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75208045-75215608 transcript_region:SL2.40ch01:75208045..75215608- go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 gamma 1 (AHRD V1 *-*- A9QXE6_MESAU); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00040433g0005.1 protein AED:0.01 eAED:0.01 QI:347|1|1|1|0|0.5|2|324|155; (*GB) gi|22947852|gb|AAN07898.1| (e_value=1e-82) xyloglucan endotransglycosylase [Malus x domestica];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=2e-73) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G57550.1 (e_value=8e-74) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284;; (*ITAG) Solyc05g046290.2.1 (e_value=1e-87) genomic_reference:SL2.40ch05 gene_region:57632274-57634988 transcript_region:SL2.40ch05:57632274..57634988+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q8GTJ0_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00040433g0001.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.25|1|1|4|0|97; (*GB) gi|224091885|ref|XP_002309385.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0C2|EGC1_ARATH (e_value=1e-29) Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana GN=EGC1 PE=2 SV=1;; (*TAIR) AT4G30380.1 (e_value=1e-30) | Symbols: | Barwin-related endoglucanase | chr4:14860486-14860994 FORWARD LENGTH=123;; (*ITAG) Solyc07g006390.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1211878-1212553 transcript_region:SL2.40ch07:1211878..1212553- functional_description:"Blight-associated protein P12 (Fragment) (AHRD V1 ***- B6RN16_9ROSI); contains Interpro domain(s) IPR005132 Rare lipoprotein A "; NbS00022338g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.85|0.86|1|1|1|15|666|820; (*GB) gi|417488|sp|P32811.1|PHSH_SOLTU (e_value=0.0) RecName: Full=Alpha-glucan phosphorylase, H isozyme; AltName: Full=Starch phosphorylase H;; (*SWP) sp|P32811|PHSH_SOLTU (e_value=0.0) Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT3G46970.1 (e_value=0.0) | Symbols: ATPHS2, PHS2 | alpha-glucan phosphorylase 2 | chr3:17301625-17306111 REVERSE LENGTH=841;; (*ITAG) Solyc09g031970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:25052011-25067170 transcript_region:SL2.40ch09:25052011..25067170+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9HP81_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00022338g0001.1 protein AED:0.12 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|90; (*ITAG) Solyc10g009150.2.1 (e_value=9e-16) genomic_reference:SL2.40ch10 gene_region:3151104-3152540 transcript_region:SL2.40ch10:3151104..3152540+ functional_description:"Organ-specific protein S2 (AHRD V1 ***- OSS2_PEA)"; NbS00016018g0017.1 protein AED:0.16 eAED:0.16 QI:0|1|0.77|1|0.75|0.77|9|0|397; (*GB) gi|356533598|ref|XP_003535349.1| (e_value=1e-176) PREDICTED: DNA excision repair protein ERCC-1-like [Glycine max];; (*SWP) sp|Q9MA98|ERCC1_ARATH (e_value=3e-155) DNA excision repair protein ERCC-1 OS=Arabidopsis thaliana GN=ERCC1 PE=2 SV=1;; (*TAIR) AT3G05210.1 (e_value=2e-156) | Symbols: ERCC1, UVR7 | nucleotide repair protein, putative | chr3:1479591-1481823 FORWARD LENGTH=410;; (*ITAG) Solyc03g115580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59290076-59293960 transcript_region:SL2.40ch03:59290076..59293960- go_terms:GO:0017108 functional_description:"DNA excision repair protein 1 (AHRD V1 *-*- D3BNU3_POLPA); contains Interpro domain(s) IPR004579 DNA repair protein rad10 "; GO:0017108 NbS00016018g0002.1 protein AED:0.24 eAED:0.25 QI:0|0|0.5|1|0|0.5|2|776|381; (*GB) gi|225457315|ref|XP_002281558.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera];; (*SWP) sp|Q8LK93|PP145_ARATH (e_value=2e-122) Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2;; (*TAIR) AT2G02980.1 (e_value=2e-123) | Symbols: OTP85 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:868468-870279 FORWARD LENGTH=603;; (*ITAG) Solyc03g115570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59288233-59290008 transcript_region:SL2.40ch03:59288233..59290008- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00016018g0019.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|7|340|455; (*GB) gi|255547297|ref|XP_002514706.1| (e_value=0.0) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9FF12|GSXL9_ARATH (e_value=0.0) Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis thaliana GN=At5g07800 PE=2 SV=1;; (*TAIR) AT5G07800.1 (e_value=0.0) | Symbols: | Flavin-binding monooxygenase family protein | chr5:2486717-2489241 REVERSE LENGTH=460;; (*ITAG) Solyc03g115560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59283572-59287060 transcript_region:SL2.40ch03:59283572..59287060+ go_terms:GO:0004499 functional_description:"Dimethylaniline monooxygenase-like protein (AHRD V1 **** Q9FF12_ARATH); contains Interpro domain(s) IPR000960 Flavin-containing monooxygenase FMO "; GO:0004499 NbS00016018g0022.1 protein AED:0.33 eAED:0.33 QI:32|0.66|0.5|1|0|0|4|182|66 NbS00016018g0004.1 protein AED:0.82 eAED:0.86 QI:0|0|0|0.5|1|1|2|0|103; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=8e-36) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=2e-37) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=3e-33) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=2e-38) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00017277g0008.1 protein AED:0.16 eAED:0.16 QI:27|1|1|1|0.75|0.8|5|658|301; (*GB) gi|225445937|ref|XP_002263999.1| (e_value=7e-97) PREDICTED: transcription factor bHLH35 [Vitis vinifera];; (*SWP) sp|Q2HIV9|BH035_ARATH (e_value=5e-72) Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1;; (*TAIR) AT5G57150.1 (e_value=3e-73) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:23152361-23154872 FORWARD LENGTH=247;; (*ITAG) Solyc07g018010.2.1 (e_value=2e-109) genomic_reference:SL2.40ch07 gene_region:8851235-8854777 transcript_region:SL2.40ch07:8851235..8854777- go_terms:GO:0003700 functional_description:"Transcription Factor (AHRD V1 **** Q84LF9_ORYSA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00017277g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|190607497|gb|ACE79411.1| (e_value=2e-20) NBS-coding resistance gene analog [Nicotiana tabacum];; (*SWP) sp|Q9M667|RPP13_ARATH (e_value=3e-12) Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-13) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc07g009180.1.1 (e_value=5e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00043881g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.80|1|0.85|0.90|21|0|1207; (*GB) gi|225454115|ref|XP_002269352.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O65272|KEA2_ARATH (e_value=0.0) K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2;; (*TAIR) AT4G00630.1 (e_value=0.0) | Symbols: KEA2, ATKEA2 | K+ efflux antiporter 2 | chr4:261655-267789 REVERSE LENGTH=1174;; (*ITAG) Solyc01g094290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00015955g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|420; (*GB) gi|225431543|ref|XP_002281970.1| (e_value=8e-138) PREDICTED: U-box domain-containing protein 27 [Vitis vinifera];; (*SWP) sp|Q9FLF4|PUB27_ARATH (e_value=1e-117) U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1;; (*TAIR) AT5G64660.1 (e_value=1e-118) | Symbols: ATCMPG2, CMPG2 | CYS, MET, PRO, and GLY protein 2 | chr5:25842119-25843381 REVERSE LENGTH=420;; (*ITAG) Solyc11g005700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:547491-548753 transcript_region:SL2.40ch11:547491..548753+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MRW3_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00036687g0005.1 protein AED:0.17 eAED:0.17 QI:399|0.33|0.5|1|0|0|4|0|101 NbS00036687g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0|0|4|0|271; (*GB) gi|255547045|ref|XP_002514580.1| (e_value=3e-87) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=2e-28) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT1G13635.2 (e_value=6e-73) | Symbols: | DNA glycosylase superfamily protein | chr1:4674248-4675784 FORWARD LENGTH=311;; (*ITAG) Solyc05g010800.2.1 (e_value=3e-116) genomic_reference:SL2.40ch05 gene_region:4981493-4984370 transcript_region:SL2.40ch05:4981493..4984370+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 *-*- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00004955g0021.1 protein AED:0.15 eAED:0.15 QI:108|0.88|0.9|1|0.55|0.5|10|293|286; (*GB) gi|224108936|ref|XP_002315022.1| (e_value=3e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9WVA3|BUB3_MOUSE (e_value=5e-51) Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2;; (*TAIR) AT1G69400.1 (e_value=6e-84) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:26087027-26088806 FORWARD LENGTH=314;; (*ITAG) Solyc05g012720.2.1 (e_value=7e-155) genomic_reference:SL2.40ch05 gene_region:5901332-5905739 transcript_region:SL2.40ch05:5901332..5905739+ go_terms:GO:0008017,GO:0000166 functional_description:"Mitotic checkpoint protein BUB3 (AHRD V1 **-- B4FRV7_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0008017,GO:0000166 NbS00004955g0007.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|351722701|ref|NP_001236997.1| (e_value=5e-65) plastid division regulator MinE [Glycine max];; (*SWP) sp|Q9C4Z7|MINE1_ARATH (e_value=2e-61) Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1 PE=1 SV=1;; (*TAIR) AT1G69390.1 (e_value=2e-62) | Symbols: ATMINE1, MINE1, ARC12 | homologue of bacterial MinE 1 | chr1:26084721-26086284 FORWARD LENGTH=229;; (*ITAG) Solyc05g012710.2.1 (e_value=2e-80) genomic_reference:SL2.40ch05 gene_region:5895799-5899691 transcript_region:SL2.40ch05:5895799..5899691+ go_terms:GO:0042802 functional_description:"Plastid division regulator MinE (AHRD V1 ***- Q45RR9_SOYBN); contains Interpro domain(s) IPR005527 Septum formation topological specificity factor MinE "; GO:0042802 NbS00004955g0018.1 protein AED:0.24 eAED:0.24 QI:40|1|1|1|1|1|4|448|525; (*GB) gi|164666156|gb|ABA56495.2| (e_value=0.0) transcription factor WRKY2 [Capsicum annuum];; (*SWP) sp|Q9XI90|WRKY4_ARATH (e_value=3e-140) Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2;; (*TAIR) AT1G13960.1 (e_value=2e-141) | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776622-4779043 FORWARD LENGTH=514;; (*ITAG) Solyc05g012770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5928753-5934454 transcript_region:SL2.40ch05:5928753..5934454+ go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-a (AHRD V1 *-** Q1XD53_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00004955g0003.1 protein AED:0.39 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|23821292|dbj|BAC20928.1| (e_value=7e-39) pectin-glucuronyltransferase [Nicotiana plumbaginifolia];; (*SWP) sp|Q940Q8|IX10L_ARATH (e_value=1e-39) Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1;; (*TAIR) AT5G61840.1 (e_value=1e-40) | Symbols: GUT1 | Exostosin family protein | chr5:24839365-24841703 REVERSE LENGTH=415;; (*ITAG) Solyc05g012730.1.1 (e_value=6e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00004955g0024.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.33|3|248|1362; (*GB) gi|142942427|gb|ABO93001.1| (e_value=0.0) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q8W1E0|R1A_SOLDE (e_value=0.0) Late blight resistance protein R1-A OS=Solanum demissum GN=R1A PE=3 SV=1;; (*TAIR) AT5G35450.1 (e_value=1e-68) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g012910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00004955g0011.1 protein AED:0.17 eAED:0.17 QI:335|0.55|0.7|1|0.88|0.8|10|104|423; (*GB) gi|255542142|ref|XP_002512135.1| (e_value=7e-127) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G29180.2 (e_value=3e-121) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc05g012780.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5938364-5941007 transcript_region:SL2.40ch05:5938364..5941007- functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00012044g0005.1 protein AED:0.24 eAED:0.24 QI:86|1|0.66|1|1|1|6|269|377; (*GB) gi|147777305|emb|CAN66802.1| (e_value=6e-154) hypothetical protein VITISV_041905 [Vitis vinifera];; (*SWP) sp|Q9ZUH5|SDR2_ARATH (e_value=4e-96) Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1;; (*TAIR) AT2G24190.1 (e_value=3e-97) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10283740-10284934 REVERSE LENGTH=296;; (*ITAG) Solyc11g071460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52002807-52004953 transcript_region:SL2.40ch11:52002807..52004953- go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 13 (AHRD V1 **-- DHR13_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00054563g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|20149046|gb|AAM12778.1| (e_value=3e-42) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-32) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=2e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110920.2.1 (e_value=1e-50) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00054563g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|83; (*GB) gi|20149046|gb|AAM12778.1| (e_value=1e-42) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=6e-36) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=9e-36) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110920.2.1 (e_value=3e-52) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00054563g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|20149046|gb|AAM12778.1| (e_value=3e-42) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=3e-34) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=3e-37) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110920.2.1 (e_value=4e-52) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00054563g0007.1 protein AED:0.38 eAED:0.68 QI:0|0|0|1|0|0|2|0|105; (*GB) gi|20149046|gb|AAM12778.1| (e_value=2e-20) auxin-induced SAUR-like protein [Capsicum annuum];; (*ITAG) Solyc01g110780.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89106505-89106765 transcript_region:SL2.40ch01:89106505..89106765- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00054563g0008.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|0|0|2|0|100; (*GB) gi|20149044|gb|AAM12777.1| (e_value=1e-26) putative auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=3e-22) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18010.1 (e_value=1e-26) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5963033-5963305 REVERSE LENGTH=90;; (*ITAG) Solyc01g110920.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00054563g0006.1 protein AED:0.61 eAED:0.74 QI:0|0|0|0.5|0|0|4|0|83; (*ITAG) Solyc01g110920.2.1 (e_value=8e-20) genomic_reference:SL2.40ch01 gene_region:89160765-89161344 transcript_region:SL2.40ch01:89160765..89161344+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00018173g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|283; (*GB) gi|349891782|gb|AEQ20672.1| (e_value=0.0) PIP2;1 [Karelinia caspia];; (*SWP) sp|P43286|PIP21_ARATH (e_value=2e-170) Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=1e-171) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc09g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00018173g0003.1 protein AED:0.12 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|155; (*GB) gi|57014019|ref|YP_173490.1| (e_value=4e-65) hypothetical protein NitaMp153 [Nicotiana tabacum];; (*ITAG) Solyc01g065790.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018173g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|222; (*GB) gi|57013908|ref|YP_173381.1| (e_value=4e-33) hypothetical protein NitaMp035 [Nicotiana tabacum]; NbS00018173g0011.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|283; (*GB) gi|349891782|gb|AEQ20672.1| (e_value=0.0) PIP2;1 [Karelinia caspia];; (*SWP) sp|P43286|PIP21_ARATH (e_value=2e-170) Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=1e-171) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc09g007760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00024770g0006.1 protein AED:0.13 eAED:0.15 QI:0|0.76|0.78|1|0.69|0.71|14|382|838; (*GB) gi|225426862|ref|XP_002276931.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265091 [Vitis vinifera];; (*SWP) sp|Q4L6I1|RS1_STAHJ (e_value=4e-14) 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1;; (*TAIR) AT1G12800.1 (e_value=0.0) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:4361778-4365189 REVERSE LENGTH=767;; (*ITAG) Solyc08g007950.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2447788-2457565 transcript_region:SL2.40ch08:2447788..2457565+ go_terms:GO:0003723 functional_description:"30S ribosomal protein S1 (AHRD V1 *-*- B9CNP3_9ACTN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00024770g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|5732059|gb|AAD48958.1|AF149414_7 (e_value=3e-13) similar to Pfam families PF00069 (Eukaryotic protein kinase domain; score=180.8, E=2.2e-50, N=2) and PF00036 (EF hand; score=123.5, E=4e-33, N=1) [Arabidopsis thaliana];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=6e-13) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.2 (e_value=4e-14) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28537743-28540448 FORWARD LENGTH=561;; (*ITAG) Solyc02g032820.2.1 (e_value=2e-16) genomic_reference:SL2.40ch02 gene_region:20070295-20078341 transcript_region:SL2.40ch02:20070295..20078341+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 ***- Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00025905g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|321; (*GB) gi|359480496|ref|XP_003632477.1| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100854068 [Vitis vinifera];; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=2e-42) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT1G72220.1 (e_value=1e-43) | Symbols: | RING/U-box superfamily protein | chr1:27184388-27185629 REVERSE LENGTH=413;; (*ITAG) Solyc11g010330.1.1 (e_value=3e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3405885-3407054 transcript_region:SL2.40ch11:3405885..3407054+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00025905g0102.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.75|1|1|4|0|277 NbS00025905g0101.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|136 NbS00023606g0001.1 protein AED:0.26 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|300; (*GB) gi|357966935|gb|AET97563.1| (e_value=4e-147) galactose oxidase [Ziziphus jujuba];; (*TAIR) AT1G75620.1 (e_value=2e-133) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081130.1.1 (e_value=4e-174) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00023606g0002.1 protein AED:0.35 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|225458077|ref|XP_002280559.1| (e_value=3e-78) PREDICTED: galactose oxidase-like [Vitis vinifera];; (*TAIR) AT1G75620.1 (e_value=8e-67) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc04g081110.1.1 (e_value=9e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62746785-62748422 transcript_region:SL2.40ch04:62746785..62748422- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00034446g0004.1 protein AED:0.25 eAED:0.25 QI:289|0.71|0.62|0.87|0.71|0.75|8|242|539; (*GB) gi|255565968|ref|XP_002523972.1| (e_value=0.0) RNA polymerase sigma factor rpoD1, putative [Ricinus communis];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=4e-79) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G08540.1 (e_value=4e-163) | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | RNApolymerase sigma subunit 2 | chr1:2703461-2706696 FORWARD LENGTH=572;; (*ITAG) Solyc01g081490.2.1 (e_value=5e-176) genomic_reference:SL2.40ch01 gene_region:73199206-73204884 transcript_region:SL2.40ch01:73199206..73204884+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 *-*- Q59965_SYNP2); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00020760g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0.2|0.8|1|1|5|0|270; (*ITAG) Solyc01g010440.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00049665g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.86|0.87|1|0.93|0.93|16|0|714; (*GB) gi|255552828|ref|XP_002517457.1| (e_value=0.0) H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis];; (*SWP) sp|Q08436|PMA3_NICPL (e_value=0.0) Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc03g113400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57608874-57615656 transcript_region:SL2.40ch03:57608874..57615656+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00041257g0008.1 protein AED:0.20 eAED:0.20 QI:514|0.75|0.6|1|0.5|0.6|5|153|349; (*GB) gi|11133831|sp|O04856.1|PP11_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP1 isozyme 1;; (*SWP) sp|O04856|PP11_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1;; (*TAIR) AT5G59160.3 (e_value=0.0) | Symbols: TOPP2, PPO | type one serine/threonine protein phosphatase 2 | chr5:23879567-23881102 FORWARD LENGTH=312;; (*ITAG) Solyc06g005800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:831375-835231 transcript_region:SL2.40ch06:831375..835231- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q9SPE2_MALDO); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00041257g0006.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0|0.5|1|1|4|0|116; (*GB) gi|255558950|ref|XP_002520498.1| (e_value=3e-66) DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative [Ricinus communis];; (*SWP) sp|P46279|RPB7_SOYBN (e_value=3e-66) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G59180.1 (e_value=6e-65) | Symbols: NRPB7 | DNA-directed RNA polymerase II | chr5:23883499-23884976 FORWARD LENGTH=176;; (*ITAG) Solyc06g005790.2.1 (e_value=4e-71) genomic_reference:SL2.40ch06 gene_region:819742-824084 transcript_region:SL2.40ch06:819742..824084- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003899 NbS00059563g0003.1 protein AED:0.00 eAED:0.00 QI:296|0.90|0.91|1|0.81|0.75|12|179|239; (*GB) gi|359474056|ref|XP_002275095.2| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100242735 [Vitis vinifera];; (*ITAG) Solyc06g035440.2.1 (e_value=1e-107) genomic_reference:SL2.40ch06 gene_region:21031767-21036331 transcript_region:SL2.40ch06:21031767..21036331+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024528g0001.1 protein AED:0.15 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|225452813|ref|XP_002283533.1| (e_value=1e-80) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=3e-56) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT3G28920.1 (e_value=6e-64) | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34 | chr3:10940598-10941536 REVERSE LENGTH=312;; (*ITAG) Solyc02g067310.2.1 (e_value=7e-117) genomic_reference:SL2.40ch02 gene_region:32071981-32073391 transcript_region:SL2.40ch02:32071981..32073391+ go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbC25743683g0001.1 protein AED:0.00 eAED:0.00 QI:899|-1|1|1|-1|1|1|0|381; (*GB) gi|255561524|ref|XP_002521772.1| (e_value=1e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G62380.1 (e_value=7e-13) | Symbols: | CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:23083609-23084852 REVERSE LENGTH=325;; (*ITAG) Solyc09g072680.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60789850-60791031 transcript_region:SL2.40ch09:60789850..60791031- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00011489g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|596; (*GB) gi|255552969|ref|XP_002517527.1| (e_value=0.0) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=0.0) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=0.0) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00011489g0002.1 protein AED:0.47 eAED:0.49 QI:0|1|0|1|0|0|2|0|152 NbS00021169g0008.1 protein AED:0.04 eAED:0.04 QI:0|0.4|0.16|1|0.4|0.16|6|0|1264; (*GB) gi|122239909|sp|Q94FM7.2|C71DK_TOBAC (e_value=0.0) RecName: Full=5-epiaristolochene 1,3-dihydroxylase; Short=NtEAH; AltName: Full=Cytochrome P450 71D20;; (*SWP) sp|Q94FM7|C71DK_TOBAC (e_value=0.0) 5-epiaristolochene 1,3-dihydroxylase OS=Nicotiana tabacum GN=CYP71D20 PE=1 SV=2;; (*TAIR) AT3G26310.1 (e_value=5e-118) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc04g083140.1.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53800468-53802449 transcript_region:SL2.40ch04:53800468..53802449+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00021169g0106.1 protein AED:0.02 eAED:0.02 QI:102|1|1|1|1|1|2|75|482 NbS00021169g0201.1 protein AED:0.16 eAED:0.16 QI:270|0.81|0.75|0.91|0.90|0.83|12|571|386 NbS00021169g0210.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|782 NbS00002751g0009.1 protein AED:0.12 eAED:0.12 QI:217|0.88|1|1|0.77|0.8|10|317|544; (*GB) gi|350539521|ref|NP_001233915.1| (e_value=0.0) mitogen-activated protein kinase 16 [Solanum lycopersicum];; (*SWP) sp|Q9LV37|MPK9_ARATH (e_value=0.0) Mitogen-activated protein kinase 9 OS=Arabidopsis thaliana GN=MPK9 PE=2 SV=2;; (*TAIR) AT3G18040.1 (e_value=0.0) | Symbols: MPK9 | MAP kinase 9 | chr3:6174800-6178150 FORWARD LENGTH=510;; (*ITAG) Solyc06g068990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39197548-39203557 transcript_region:SL2.40ch06:39197548..39203557+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** A9RAB3_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00002751g0004.1 protein AED:0.40 eAED:0.77 QI:0|0|0|1|1|1|2|0|123 NbS00002751g0010.1 protein AED:0.46 eAED:0.79 QI:0|0|0|1|0|0|2|0|94 NbS00049383g0001.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|1|1|2|0|196; (*GB) gi|297832534|ref|XP_002884149.1| (e_value=1e-17) hypothetical protein ARALYDRAFT_900256 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZV51|ATL56_ARATH (e_value=7e-19) RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2 SV=1;; (*TAIR) AT2G18670.1 (e_value=5e-20) | Symbols: | RING/U-box superfamily protein | chr2:8093469-8094452 FORWARD LENGTH=181;; (*ITAG) Solyc07g006400.1.1 (e_value=3e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:1221828-1222322 transcript_region:SL2.40ch07:1221828..1222322+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024903g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.76|1|0.66|0.61|13|398|681; (*GB) gi|225470467|ref|XP_002263088.1| (e_value=3e-180) PREDICTED: uncharacterized protein LOC100245919 [Vitis vinifera];; (*SWP) sp|O22040|ANP1_ARATH (e_value=3e-65) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT5G66850.1 (e_value=2e-158) | Symbols: MAPKKK5 | mitogen-activated protein kinase kinase kinase 5 | chr5:26695965-26699159 REVERSE LENGTH=716;; (*ITAG) Solyc04g079400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61503685-61508549 transcript_region:SL2.40ch04:61503685..61508549- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00011913g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|1|1|4|0|240; (*GB) gi|118486116|gb|ABK94901.1| (e_value=4e-124) unknown [Populus trichocarpa];; (*SWP) sp|Q9ZUA5|VIT1_ARATH (e_value=2e-122) Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1;; (*TAIR) AT2G01770.1 (e_value=1e-123) | Symbols: VIT1, ATVIT1 | vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250;; (*ITAG) Solyc04g008060.2.1 (e_value=6e-138) genomic_reference:SL2.40ch04 gene_region:1717764-1721092 transcript_region:SL2.40ch04:1717764..1721092- go_terms:GO:0015093 functional_description:"Vacuolar iron transporter Ccc1 (AHRD V1 **-* C5GIS5_AJEDR); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; GO:0015093 NbS00011913g0008.1 protein AED:0.03 eAED:0.03 QI:309|1|0.8|1|1|1|5|0|654; (*GB) gi|343407540|gb|AEM23771.1| (e_value=0.0) RRB1 type-b response regulator [Nicotiana tabacum];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=1e-109) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=8e-111) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc04g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1707771-1714100 transcript_region:SL2.40ch04:1707771..1714100+ go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 ***- Q9AV93_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0006355,GO:0045449 NbS00029319g0003.1 protein AED:0.28 eAED:0.28 QI:43|-1|0|1|-1|0|1|0|60 NbS00029579g0001.1 protein AED:0.53 eAED:0.77 QI:0|0.33|0|0.75|1|1|4|0|83; (*TAIR) AT3G17300.1 (e_value=4e-16) | Symbols: | unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:5907616-5908695 FORWARD LENGTH=91;; (*ITAG) Solyc03g033850.2.1 (e_value=1e-18) genomic_reference:SL2.40ch03 gene_region:9732698-9738958 transcript_region:SL2.40ch03:9732698..9738958+ go_terms:GO:0005484 functional_description:"Syntaxin 81 (AHRD V1 ***- B6TDT7_MAIZE); contains Interpro domain(s) IPR019529 SNARE-complex protein Syntaxin-18 N-terminal "; GO:0005484 NbS00011267g0008.1 protein AED:0.13 eAED:0.13 QI:0|0.87|0.82|0.94|0.81|0.88|17|0|654; (*GB) gi|302143839|emb|CBI22700.3| (e_value=7e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5REP4|KIF22_PONAB (e_value=3e-39) Kinesin-like protein KIF22 OS=Pongo abelii GN=KIF22 PE=2 SV=1;; (*TAIR) AT5G02370.1 (e_value=1e-79) | Symbols: | ATP binding microtubule motor family protein | chr5:503444-506388 FORWARD LENGTH=628;; (*ITAG) Solyc03g025470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7257641-7262656 transcript_region:SL2.40ch03:7257641..7262656- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9LZ88_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00011267g0009.1 protein AED:0.03 eAED:0.04 QI:0|1|0.6|1|1|1|5|0|521; (*GB) gi|225464501|ref|XP_002272050.1| (e_value=2e-136) PREDICTED: uncharacterized protein At3g49055 [Vitis vinifera];; (*SWP) sp|Q5XVA8|Y3905_ARATH (e_value=8e-56) Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1;; (*TAIR) AT3G49055.1 (e_value=6e-57) | Symbols: | unknown protein; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24560.1); Has 52205 Blast hits to 29376 proteins in 1994 species: Archae - 873; Bacteria - 6150; Metazoa - 27099; Fungi - 3784; Plants - 3062; Viruses - 130; Other Eukaryotes - 11107 (source: NCBI BLink). | chr3:18185166-18186968 REVERSE LENGTH=480;; (*ITAG) Solyc03g025460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7254829-7258560 transcript_region:SL2.40ch03:7254829..7258560+ functional_description:"Myosin heavy chain-related-like (AHRD V1 **-- Q6YYY2_ORYSJ)"; NbS00026579g0007.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|1|1|2|0|217; (*ITAG) Solyc07g017830.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8179189-8182099 transcript_region:SL2.40ch07:8179189..8182099+ functional_description:"Mutator-like transposase-like protein (AHRD V1 *--- Q9FHV3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00026579g0008.1 protein AED:0.08 eAED:0.08 QI:159|1|1|1|0.5|0.66|3|235|101; (*GB) gi|225438551|ref|XP_002279833.1| (e_value=2e-47) PREDICTED: uncharacterized protein LOC100245593 [Vitis vinifera];; (*TAIR) AT5G09960.1 (e_value=2e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3106503-3107658 FORWARD LENGTH=112;; (*ITAG) Solyc04g051820.2.1 (e_value=3e-50) genomic_reference:SL2.40ch04 gene_region:50279334-50282705 transcript_region:SL2.40ch04:50279334..50282705+ functional_description:"Os03g0169900 protein (Fragment) (AHRD V1 ***- Q0DUS0_ORYSJ)"; NbS00026579g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=3e-45) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9SA68|GRXS1_ARATH (e_value=4e-42) Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1;; (*TAIR) AT1G03020.1 (e_value=3e-43) | Symbols: | Thioredoxin superfamily protein | chr1:698207-698515 REVERSE LENGTH=102;; (*ITAG) Solyc04g011850.1.1 (e_value=4e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4258018-4258326 transcript_region:SL2.40ch04:4258018..4258326+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00011177g0009.1 protein AED:0.20 eAED:0.29 QI:0|0|0|0.4|1|1|5|0|206; (*GB) gi|357134450|ref|XP_003568830.1| (e_value=8e-39) PREDICTED: uncharacterized protein LOC100846711 isoform 1 [Brachypodium distachyon];; (*TAIR) AT5G09380.1 (e_value=2e-36) | Symbols: | RNA polymerase III RPC4 | chr5:2911313-2913136 REVERSE LENGTH=272;; (*ITAG) Solyc05g051620.2.1 (e_value=3e-38) genomic_reference:SL2.40ch05 gene_region:61139484-61144048 transcript_region:SL2.40ch05:61139484..61144048+ go_terms:GO:0005666 functional_description:"DNA-directed RNA polymerase III subunit RPC4 (AHRD V1 *-*- B5X342_SALSA); contains Interpro domain(s) IPR007811 RNA polymerase III Rpc4 "; GO:0005666 NbS00011177g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|356555602|ref|XP_003546119.1| (e_value=1e-63) PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=8e-36) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=6e-37) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g091710.1.1 (e_value=6e-113) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00031030g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|225443586|ref|XP_002273463.1| (e_value=7e-53) PREDICTED: homeobox-leucine zipper protein ATHB-52 [Vitis vinifera];; (*SWP) sp|Q9FN29|ATB52_ARATH (e_value=2e-25) Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1;; (*TAIR) AT5G53980.1 (e_value=1e-26) | Symbols: ATHB52, HB52 | homeobox protein 52 | chr5:21914087-21914557 FORWARD LENGTH=156;; (*ITAG) Solyc02g077590.1.1 (e_value=2e-78) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:37056285-37056824 transcript_region:SL2.40ch02:37056285..37056824- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00031030g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|225443584|ref|XP_002278515.1| (e_value=1e-22) PREDICTED: glutaredoxin-C9-like [Vitis vinifera];; (*SWP) sp|Q9SGP6|GRXC9_ARATH (e_value=3e-22) Glutaredoxin-C9 OS=Arabidopsis thaliana GN=GRXC9 PE=1 SV=1;; (*TAIR) AT1G28480.1 (e_value=3e-23) | Symbols: GRX480, roxy19 | Thioredoxin superfamily protein | chr1:10013634-10014047 REVERSE LENGTH=137;; (*ITAG) Solyc02g077580.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:37051511-37051942 transcript_region:SL2.40ch02:37051511..37051942+ go_terms:GO:0008794,GO:0005515 functional_description:"Glutaredoxin (AHRD V1 **** B9H2P7_POPTR); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0008794,GO:0005515 NbS00002538g0005.1 protein AED:0.19 eAED:0.19 QI:272|1|0.9|1|0.88|0.8|10|0|679; (*GB) gi|23664357|gb|AAN39330.1| (e_value=0.0) telomere binding protein TBP1 [Nicotiana glutinosa];; (*SWP) sp|Q9FFY9|TRP4_ARATH (e_value=1e-134) Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1;; (*TAIR) AT5G13820.1 (e_value=8e-136) | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | telomeric DNA binding protein 1 | chr5:4461694-4464355 FORWARD LENGTH=640;; (*ITAG) Solyc05g054410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63483986-63489227 transcript_region:SL2.40ch05:63483986..63489227- go_terms:GO:0003691 functional_description:"Telomere binding protein (AHRD V1 **** A0JBS3_SOLLC); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003691 NbS00002538g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.66|0|1|0.66|0.5|4|0|335; (*GB) gi|324331817|gb|ADY38689.1| (e_value=0.0) actin [Camellia sinensis];; (*SWP) sp|P30171|ACT11_SOLTU (e_value=0.0) Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=0.0) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc04g011500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3937899-3939826 transcript_region:SL2.40ch04:3937899..3939826+ go_terms:GO:0005200 functional_description:"Actin 4 (AHRD V1 ***- B9HMH5_POPTR); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00052145g0005.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|0|0.5|2|0|167; (*GB) gi|255585301|ref|XP_002533349.1| (e_value=5e-44) poly(ADP-ribose) glycohydrolase, putative [Ricinus communis];; (*SWP) sp|Q9SKB3|PARG1_ARATH (e_value=1e-40) Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2;; (*TAIR) AT2G31870.2 (e_value=8e-42) | Symbols: TEJ | Poly (ADP-ribose) glycohydrolase (PARG) | chr2:13549999-13553756 REVERSE LENGTH=547;; (*ITAG) Solyc12g096600.1.1 (e_value=2e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63787534-63789313 transcript_region:SL2.40ch12:63787534..63789313+ go_terms:GO:0005975 functional_description:"Poly(ADP-ribose) glycohydrolase (AHRD V1 *-*- Q0ZCE0_POPTR); contains Interpro domain(s) IPR007724 Poly(ADP-ribose) glycohydrolase "; GO:0005975 NbS00015031g0014.1 protein AED:0.18 eAED:0.20 QI:0|0|0|0.4|1|1|5|0|515; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=9e-166) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=7e-167) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015031g0009.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|229; (*GB) gi|48210029|gb|AAT40540.1| (e_value=5e-91) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=2e-69) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=2e-70) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=1e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015031g0006.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|48210029|gb|AAT40540.1| (e_value=5e-82) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=5e-72) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=4e-73) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=4e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015031g0016.1 protein AED:0.29 eAED:0.32 QI:123|0|0|1|0|0|3|0|371; (*GB) gi|48210029|gb|AAT40540.1| (e_value=0.0) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=2e-164) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=2e-165) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc04g005670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:444808-446022 transcript_region:SL2.40ch04:444808..446022+ functional_description:"Kelch-like protein 17 (AHRD V1 *-*- KLH17_RAT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00057069g0003.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|214; (*GB) gi|198250343|gb|ACH85188.1| (e_value=3e-50) main allergen 15 kDa oleosin [Sesamum indicum];; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=9e-45) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT4G25140.1 (e_value=1e-40) | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900498-12901259 FORWARD LENGTH=173;; (*ITAG) Solyc06g034040.1.1 (e_value=7e-68) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:20256027-20256470 transcript_region:SL2.40ch06:20256027..20256470- go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- A5JVA7_FICAW); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00002806g0004.1 protein AED:0.16 eAED:0.19 QI:0|0.66|0.5|0.75|0|0.5|4|0|286; (*GB) gi|359492412|ref|XP_003634410.1| (e_value=4e-22) PREDICTED: protein terminal ear1-like [Vitis vinifera];; (*SWP) sp|O65001|TE1_MAIZE (e_value=1e-17) Protein terminal ear1 OS=Zea mays GN=TE1 PE=2 SV=1;; (*TAIR) AT1G37140.1 (e_value=2e-23) | Symbols: MCT1 | MEI2 C-terminal RRM only like 1 | chr1:14170351-14172040 REVERSE LENGTH=233;; (*ITAG) Solyc05g056360.1.1 (e_value=3e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64845418-64847913 transcript_region:SL2.40ch05:64845418..64847913+ functional_description:"MEI2-like RNA binding protein (AHRD V1 *--- Q652K6_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; NbS00017218g0012.1 protein AED:0.01 eAED:0.01 QI:98|1|1|1|1|1|2|134|483; (*GB) gi|20146091|dbj|BAB88934.1| (e_value=0.0) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=1e-180) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21750.1 (e_value=2e-143) | Symbols: UGT71B1 | UDP-glucosyl transferase 71B1 | chr3:7664565-7665986 FORWARD LENGTH=473;; (*ITAG) Solyc12g014010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4844617-4847217 transcript_region:SL2.40ch12:4844617..4847217+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- Q8RU72_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00017218g0016.1 protein AED:0.03 eAED:0.03 QI:0|1|0.87|1|0.71|0.5|8|0|473; (*GB) gi|71726952|gb|AAZ39647.1| (e_value=5e-178) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|O23051|KAO1_ARATH (e_value=6e-111) Ent-kaurenoic acid oxidase 1 OS=Arabidopsis thaliana GN=KAO1 PE=2 SV=1;; (*TAIR) AT1G05160.1 (e_value=4e-112) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc12g006460.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:934011-938703 transcript_region:SL2.40ch12:934011..938703- go_terms:GO:0051777 functional_description:"Cytochrome P450"; GO:0051777 NbS00017218g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|198 NbS00017218g0017.1 protein AED:0.48 eAED:0.49 QI:16|0.42|0.5|0.75|0.42|0.5|8|0|184; (*GB) gi|218195569|gb|EEC77996.1| (e_value=1e-43) hypothetical protein OsI_17386 [Oryza sativa Indica Group];; (*SWP) sp|Q84P54|GATP1_SOLLC (e_value=3e-46) Gamma aminobutyrate transaminase 1, mitochondrial OS=Solanum lycopersicum GN=GABA-TP1 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=2e-42) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc07g043310.2.1 (e_value=1e-47) genomic_reference:SL2.40ch07 gene_region:54313638-54320300 transcript_region:SL2.40ch07:54313638..54320300+ go_terms:GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- D2KZ08_WHEAT); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00010205g0004.1 protein AED:0.38 eAED:0.38 QI:34|0.25|0|0.6|1|1|5|263|16 NbS00033201g0003.1 protein AED:0.10 eAED:0.10 QI:0|0|0.33|1|0|0|3|14|381; (*GB) gi|310813973|gb|ADP30798.1| (e_value=0.0) nicotine uptake permease 1 [Nicotiana tabacum];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=6e-113) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=4e-114) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g087870.1.1 (e_value=8e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61812407-61814074 transcript_region:SL2.40ch12:61812407..61814074+ functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00005739g0003.1 protein AED:0.42 eAED:0.54 QI:0|0|0|0.75|1|1|4|0|134 NbS00000202g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|255539657|ref|XP_002510893.1| (e_value=0.0) Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis];; (*SWP) sp|Q8H038|KATAM_ORYSJ (e_value=9e-77) Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1;; (*TAIR) AT5G62220.1 (e_value=2e-163) | Symbols: ATGT18, GT18 | glycosyltransferase 18 | chr5:24988456-24990009 REVERSE LENGTH=517;; (*ITAG) Solyc02g092840.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48393830-48395374 transcript_region:SL2.40ch02:48393830..48395374+ go_terms:GO:0003824 functional_description:"Galactosyltransferase-like protein (Fragment) (AHRD V1 **-- D8RHX9_SELML); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00012710g0006.1 protein AED:0.07 eAED:0.09 QI:0|0.84|0.71|1|1|1|14|0|1901; (*GB) gi|359476018|ref|XP_002280997.2| (e_value=0.0) PREDICTED: DDB1- and CUL4-associated factor homolog 1-like [Vitis vinifera];; (*SWP) sp|Q9M086|DCAF1_ARATH (e_value=0.0) DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana GN=DCAF1 PE=1 SV=2;; (*TAIR) AT4G31160.1 (e_value=0.0) | Symbols: DCAF1 | DDB1-CUL4 associated factor 1 | chr4:15145936-15152939 FORWARD LENGTH=1883;; (*ITAG) Solyc08g074370.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55653575-55662343 transcript_region:SL2.40ch08:55653575..55662343- go_terms:GO:0005515,GO:0000166 functional_description:"DDB1- and CUL4-associated factor homolog 1 (AHRD V1 **-- DCAF1_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00034322g0008.1 protein AED:0.21 eAED:0.21 QI:639|0.72|0.66|1|0.90|0.83|12|0|804; (*GB) gi|225427118|ref|XP_002276932.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266131 [Vitis vinifera];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=7e-69) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc08g076390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57566162-57571967 transcript_region:SL2.40ch08:57566162..57571967+ go_terms:GO:0005634 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005634 NbS00001233g0003.1 protein AED:0.13 eAED:0.13 QI:196|0.8|1|1|1|1|6|241|240; (*GB) gi|297836694|ref|XP_002886229.1| (e_value=4e-98) hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9GZT6|CC90B_HUMAN (e_value=2e-17) Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens GN=CCDC90B PE=1 SV=2;; (*TAIR) AT2G16460.1 (e_value=8e-100) | Symbols: | Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230;; (*ITAG) Solyc01g110320.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:88811046-88814756 transcript_region:SL2.40ch01:88811046..88814756- go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00046158g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|134; (*GB) gi|6692816|dbj|BAA89423.1| (e_value=4e-84) allyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q39172|P1_ARATH (e_value=6e-54) NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1;; (*TAIR) AT5G16970.1 (e_value=5e-55) | Symbols: AT-AER, AER | alkenal reductase | chr5:5576291-5578001 REVERSE LENGTH=345;; (*ITAG) Solyc06g063040.1.1 (e_value=8e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:36189487-36190518 transcript_region:SL2.40ch06:36189487..36190518- go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D6Y638_THEBD); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00032023g0003.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|245; (*GB) gi|224106780|ref|XP_002314283.1| (e_value=2e-133) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL29|CNG15_ARATH (e_value=2e-128) Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1;; (*TAIR) AT2G28260.1 (e_value=2e-129) | Symbols: ATCNGC15, CNGC15 | cyclic nucleotide-gated channel 15 | chr2:12049989-12052453 FORWARD LENGTH=678;; (*ITAG) Solyc09g007840.2.1 (e_value=3e-159) genomic_reference:SL2.40ch09 gene_region:1373797-1376961 transcript_region:SL2.40ch09:1373797..1376961- go_terms:GO:0031722,GO:0031721 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0031722,GO:0031721 NbS00021543g0010.1 protein AED:0.01 eAED:0.01 QI:95|1|0.5|1|0|0.5|2|0|73 NbS00021543g0009.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|2|0|768; (*GB) gi|359483031|ref|XP_002271968.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=2e-176) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=1e-177) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc02g076700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36416462-36418690 transcript_region:SL2.40ch02:36416462..36418690- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000943g0017.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|351722245|ref|NP_001238005.1| (e_value=4e-47) seed maturation protein PM31 [Glycine max];; (*SWP) sp|P13853|HS17C_ARATH (e_value=3e-37) 17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2;; (*TAIR) AT1G53540.1 (e_value=2e-38) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19980510-19980983 FORWARD LENGTH=157;; (*ITAG) Solyc04g072250.2.1 (e_value=4e-66) genomic_reference:SL2.40ch04 gene_region:56842685-56844459 transcript_region:SL2.40ch04:56842685..56844459- go_terms:GO:0042803 functional_description:"class I heat shock protein 1 (AHRD V1 ***- B6TTC8_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0042803 NbS00000943g0023.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|75; (*ITAG) Solyc08g048470.1.1 (e_value=4e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00000943g0025.1 protein AED:0.31 eAED:0.44 QI:0|0.66|0.5|1|0.66|0.8|10|0|254; (*GB) gi|224062778|ref|XP_002300887.1| (e_value=1e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94BU1|Y1181_ARATH (e_value=4e-114) Uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1 SV=1;; (*TAIR) AT1G71810.1 (e_value=3e-115) | Symbols: | Protein kinase superfamily protein | chr1:27002602-27007964 REVERSE LENGTH=692;; (*ITAG) Solyc04g072230.2.1 (e_value=3e-136) genomic_reference:SL2.40ch04 gene_region:56815122-56829406 transcript_region:SL2.40ch04:56815122..56829406- go_terms:GO:0006468 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0006468 NbS00000943g0021.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|90 NbS00000943g0014.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.25|1|1|4|0|310 NbS00000943g0026.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0.2|1|0.75|0.6|5|0|608; (*GB) gi|21105742|gb|AAM34770.1|AF509870_1 (e_value=0.0) nam-like protein 7 [Petunia x hybrida];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=1e-63) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT1G34190.1 (e_value=9e-109) | Symbols: anac017, NAC017 | NAC domain containing protein 17 | chr1:12451729-12453914 FORWARD LENGTH=557;; (*ITAG) Solyc04g072220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56809986-56813485 transcript_region:SL2.40ch04:56809986..56813485+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00000943g0027.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|106; (*GB) gi|291513498|emb|CBK62671.1| (e_value=6e-39) RNA polymerase beta subunit protein [Salix triandra];; (*SWP) sp|Q14FG6|RPOC1_POPAL (e_value=8e-37) DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=1e-36) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc01g017380.1.1 (e_value=7e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23943361-23943618 transcript_region:SL2.40ch01:23943361..23943618+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta' (AHRD V1 ***- RPOC1_LEMMI); contains Interpro domain(s) IPR007080 RNA polymerase Rpb1, domain 1 "; GO:0006350 NbS00018665g0004.1 protein AED:0.15 eAED:0.15 QI:693|0.66|0.71|1|0.33|0.42|7|0|620; (*GB) gi|38045387|gb|AAR08678.1| (e_value=0.0) EIN2 [Petunia x hybrida];; (*SWP) sp|Q9S814|EIN2_ARATH (e_value=1e-166) Ethylene-insensitive protein 2 OS=Arabidopsis thaliana GN=EIN2 PE=1 SV=1;; (*TAIR) AT5G03280.1 (e_value=1e-167) | Symbols: EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 | NRAMP metal ion transporter family protein | chr5:788589-793066 FORWARD LENGTH=1294;; (*ITAG) Solyc09g007870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1401117-1407730 transcript_region:SL2.40ch09:1401117..1407730+ go_terms:GO:0005515 functional_description:"Manganese transporter mntH (AHRD V1 *--- D1CW90_9RHIZ); contains Interpro domain(s) IPR017187 Ethylene-insensitive 2 "; GO:0005515 NbS00013494g0012.1 protein AED:0.17 eAED:0.18 QI:33|1|0.85|1|0.83|0.71|7|588|373; (*GB) gi|356538202|ref|XP_003537593.1| (e_value=0.0) PREDICTED: laccase-11-like [Glycine max];; (*SWP) sp|Q8VZA1|LAC11_ARATH (e_value=0.0) Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1;; (*TAIR) AT5G03260.1 (e_value=0.0) | Symbols: LAC11 | laccase 11 | chr5:777198-779338 REVERSE LENGTH=557;; (*ITAG) Solyc02g085120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42679480-42681934 transcript_region:SL2.40ch02:42679480..42681934- go_terms:GO:0004322 functional_description:"Laccase (AHRD V1 ***- Q9AUI0_PINTA); contains Interpro domain(s) IPR017761 Laccase "; GO:0004322 NbS00013494g0015.1 protein AED:0.11 eAED:0.24 QI:0|0|0|0.5|1|1|4|0|259; (*GB) gi|297744394|emb|CBI37656.3| (e_value=2e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZPW3|BH064_ARATH (e_value=1e-48) Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3;; (*TAIR) AT2G18300.1 (e_value=4e-50) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:7953022-7954446 REVERSE LENGTH=335;; (*ITAG) Solyc02g062690.2.1 (e_value=6e-84) genomic_reference:SL2.40ch02 gene_region:28989779-28991338 transcript_region:SL2.40ch02:28989779..28991338- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00013494g0016.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|0.66|0.57|7|457|191; (*GB) gi|388512629|gb|AFK44376.1| (e_value=5e-102) unknown [Medicago truncatula];; (*SWP) sp|Q9ZPW2|APC10_ARATH (e_value=1e-101) Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=1 SV=2;; (*TAIR) AT2G18290.1 (e_value=1e-102) | Symbols: APC10 | anaphase promoting complex 10 | chr2:7948522-7950096 REVERSE LENGTH=192;; (*ITAG) Solyc02g062680.2.1 (e_value=6e-121) genomic_reference:SL2.40ch02 gene_region:28981100-28984579 transcript_region:SL2.40ch02:28981100..28984579- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase-promoting complex subunit 10 family (AHRD V1 ***- D7LBA6_ARALY); contains Interpro domain(s) IPR016901 Anaphase-promoting complex, subunit 10, subgroup "; GO:0005515,GO:0004842 NbS00013494g0013.1 protein AED:0.20 eAED:0.20 QI:314|0.6|0.66|1|0.2|0.16|6|0|423; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q8GVE5|TLP2_ARATH (e_value=2e-154) Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=1e-155) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g062670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28977418-28979852 transcript_region:SL2.40ch02:28977418..28979852+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00013494g0014.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|1|1|2|0|167; (*GB) gi|356496741|ref|XP_003517224.1| (e_value=1e-47) PREDICTED: syntaxin-112-like [Glycine max];; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=2e-41) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=1e-42) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc02g085090.1.1 (e_value=4e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42668282-42669181 transcript_region:SL2.40ch02:42668282..42669181+ go_terms:GO:0005515 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005515 NbS00020194g0004.1 protein AED:0.24 eAED:0.24 QI:0|1|0.87|1|1|1|8|0|528; (*GB) gi|62945915|gb|AAY22200.1| (e_value=0.0) squalene monooxygenase [Datura inoxia];; (*SWP) sp|O48651|ERG1_PANGI (e_value=0.0) Squalene monooxygenase OS=Panax ginseng PE=2 SV=1;; (*TAIR) AT1G58440.1 (e_value=0.0) | Symbols: XF1, SQE1 | FAD/NAD(P)-binding oxidoreductase family protein | chr1:21714094-21717246 REVERSE LENGTH=531;; (*ITAG) Solyc04g077440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59945629-59949271 transcript_region:SL2.40ch04:59945629..59949271- go_terms:GO:0005515,GO:0008144 functional_description:"Squalene monooxygenase (AHRD V1 ***- Q506K3_DATIN); contains Interpro domain(s) IPR013698 Squalene epoxidase "; GO:0005515,GO:0008144 NbS00020194g0012.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.33|0|0.33|3|0|295; (*GB) gi|297738233|emb|CBI27434.3| (e_value=3e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g011540.1.1 (e_value=3e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048684g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0|0.5|4|528|166; (*GB) gi|224071431|ref|XP_002303456.1| (e_value=4e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT5G45590.1 (e_value=2e-34) | Symbols: | Ribosomal protein L35 | chr5:18484643-18486227 REVERSE LENGTH=173;; (*ITAG) Solyc06g066190.2.1 (e_value=1e-64) genomic_reference:SL2.40ch06 gene_region:37887616-37893878 transcript_region:SL2.40ch06:37887616..37893878+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L35 (Fragment) (AHRD V1 *--- D7SYN6_VITVI); contains Interpro domain(s) IPR001706 Ribosomal protein L35 "; GO:0005840 NbS00048684g0012.1 protein AED:0.00 eAED:0.00 QI:245|1|1|1|1|1|2|75|544; (*GB) gi|32470647|gb|AAP45173.1| (e_value=0.0) hypothetical protein SBB1_14t00005 [Solanum bulbocastanum];; (*ITAG) Solyc08g076040.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57270791-57273048 transcript_region:SL2.40ch08:57270791..57273048- functional_description:"cDNA clone J033107D23 full insert sequence (AHRD V1 *-*- B7ETL1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00048684g0013.1 protein AED:0.10 eAED:0.10 QI:325|1|0|1|1|1|2|149|522; (*GB) gi|225463247|ref|XP_002270541.1| (e_value=0.0) PREDICTED: cytochrome P450 76C4 [Vitis vinifera];; (*SWP) sp|O64635|C76C4_ARATH (e_value=6e-139) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=4e-140) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc06g084820.1.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37961026-37963705 transcript_region:SL2.40ch06:37961026..37963705+ go_terms:GO:0019825 functional_description:"cytochrome P450"; GO:0019825 NbS00057195g0004.1 protein AED:0.32 eAED:0.32 QI:81|1|1|1|0.75|0.77|9|359|349; (*GB) gi|13310811|gb|AAK18619.1|AF352797_1 (e_value=0.0) ankyrin-repeat protein HBP1 [Nicotiana tabacum];; (*SWP) sp|Q9SAR5|AKR2_ARATH (e_value=3e-142) Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2;; (*TAIR) AT2G17390.1 (e_value=9e-144) | Symbols: AKR2B | ankyrin repeat-containing 2B | chr2:7555870-7557743 FORWARD LENGTH=344;; (*ITAG) Solyc01g104170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84393496-84398307 transcript_region:SL2.40ch01:84393496..84398307- go_terms:GO:0008381 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 ***- B6TNC0_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00007212g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.33|0.66|1|1|3|43|155; (*ITAG) Solyc00g005860.1.1 (e_value=5e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3434263-3434662 transcript_region:SL2.40ch00:3434263..3434662+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007212g0010.1 protein AED:0.46 eAED:0.51 QI:0|0|0|0.5|0.33|0.5|4|0|148; (*ITAG) Solyc00g005870.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3435133-3436360 transcript_region:SL2.40ch00:3435133..3436360- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00007212g0009.1 protein AED:0.25 eAED:0.29 QI:50|0|0|1|0|0|3|0|205; (*ITAG) Solyc03g044360.1.1 (e_value=8e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00051838g0005.1 protein AED:0.06 eAED:0.06 QI:317|1|1|1|0.75|0.6|5|263|220; (*GB) gi|7801129|emb|CAB91552.1| (e_value=3e-71) DREPP2 protein [Nicotiana tabacum];; (*SWP) sp|Q0JPA6|SRS1_ORYSJ (e_value=2e-21) Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1;; (*TAIR) AT4G20260.5 (e_value=4e-48) | Symbols: PCAP1 | plasma-membrane associated cation-binding protein 1 | chr4:10941593-10943120 FORWARD LENGTH=167;; (*ITAG) Solyc10g005100.2.1 (e_value=3e-67) genomic_reference:SL2.40ch10 gene_region:92148-94188 transcript_region:SL2.40ch10:92148..94188+ functional_description:"Salt stress root protein RS1 (AHRD V1 **-- SRS1_ORYSJ); contains Interpro domain(s) IPR008469 DREPP plasma membrane polypeptide "; NbS00036680g0004.1 protein AED:0.01 eAED:0.01 QI:8|1|0.5|1|0.33|0|4|0|150; (*GB) gi|62183958|gb|AAX73299.1| (e_value=2e-30) putative permease I [Solanum lycopersicum];; (*SWP) sp|Q27GI3|NAT6_ARATH (e_value=9e-30) Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2;; (*TAIR) AT5G62890.3 (e_value=7e-31) | Symbols: | Xanthine/uracil permease family protein | chr5:25243723-25247075 FORWARD LENGTH=532;; (*ITAG) Solyc04g077720.1.1 (e_value=2e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60241708-60243594 transcript_region:SL2.40ch04:60241708..60243594- go_terms:GO:0022857 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0022857 NbS00036680g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|302594405|gb|ADL59392.1| (e_value=5e-81) R2 late blight resistance protein [Solanum x edinense];; (*SWP) sp|P0DI18|DRL45_ARATH (e_value=7e-26) Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1;; (*TAIR) AT1G59218.2 (e_value=6e-27) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21828398-21831713 FORWARD LENGTH=1049;; (*ITAG) Solyc04g009290.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2735950-2738484 transcript_region:SL2.40ch04:2735950..2738484- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00005452g0008.1 protein AED:0.20 eAED:0.20 QI:815|0.75|0.66|1|0.62|0.66|9|0|907; (*GB) gi|225423802|ref|XP_002277905.1| (e_value=0.0) PREDICTED: proline-rich receptor-like protein kinase PERK9 [Vitis vinifera];; (*SWP) sp|Q9SX31|PERK9_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK9 OS=Arabidopsis thaliana GN=PERK9 PE=2 SV=1;; (*TAIR) AT1G68690.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:25789192-25791886 FORWARD LENGTH=708;; (*ITAG) Solyc04g006930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:618400-625090 transcript_region:SL2.40ch04:618400..625090+ go_terms:GO:0006468,GO:0005509 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00041663g0006.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|1058; (*GB) gi|53749484|gb|AAU90337.1| (e_value=0.0) Putative receptor kinase-like protein, identical [Solanum demissum];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54171941-54175132 transcript_region:SL2.40ch03:54171941..54175132+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00041663g0009.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|53749476|gb|AAU90329.1| (e_value=4e-53) hypothetical protein SDM1_56t00007 [Solanum demissum];; (*TAIR) AT2G25720.1 (e_value=1e-28) | Symbols: | unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10955664-10956017 REVERSE LENGTH=117;; (*ITAG) Solyc03g098410.1.1 (e_value=6e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:54175764-54176117 transcript_region:SL2.40ch03:54175764..54176117- functional_description:"Os04g0566000 protein (Fragment) (AHRD V1 *-*- Q0JAZ6_ORYSJ)"; NbS00029041g0004.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.83|1|1|1|6|0|278; (*GB) gi|255553564|ref|XP_002517823.1| (e_value=9e-84) Polygalacturonase precursor, putative [Ricinus communis];; (*SWP) sp|P35336|PGLR_ACTDE (e_value=1e-78) Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1;; (*TAIR) AT3G07970.1 (e_value=1e-74) | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439;; (*ITAG) Solyc01g087280.1.1 (e_value=8e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73976402-73980711 transcript_region:SL2.40ch01:73976402..73980711+ go_terms:GO:0004650 functional_description:"Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0004650 NbS00029041g0006.1 protein AED:0.40 eAED:0.40 QI:0|1|0|1|0|0.5|2|0|106; (*GB) gi|7959973|gb|AAF71155.1|AF152753_1 (e_value=3e-35) polygalacturonase A [Actinidia chinensis];; (*SWP) sp|P35336|PGLR_ACTDE (e_value=2e-32) Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1;; (*TAIR) AT3G07970.1 (e_value=5e-29) | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439;; (*ITAG) Solyc01g087280.1.1 (e_value=5e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73976402-73980711 transcript_region:SL2.40ch01:73976402..73980711+ go_terms:GO:0004650 functional_description:"Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0004650 NbS00018499g0003.1 protein AED:0.29 eAED:0.29 QI:208|1|1|1|1|1|2|456|326; (*GB) gi|317106634|dbj|BAJ53140.1| (e_value=1e-143) JHL05D22.11 [Jatropha curcas];; (*SWP) sp|B6YWH0|GYAR_THEON (e_value=5e-52) Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1;; (*TAIR) AT2G45630.2 (e_value=9e-131) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18797089 FORWARD LENGTH=338;; (*ITAG) Solyc01g093990.2.1 (e_value=5e-179) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbS00015093g0004.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.2|0.8|0.5|0.4|5|0|781; (*GB) gi|359480844|ref|XP_002276745.2| (e_value=2e-78) PREDICTED: uncharacterized protein LOC100252593 [Vitis vinifera];; (*TAIR) AT4G39680.2 (e_value=8e-50) | Symbols: | SAP domain-containing protein | chr4:18414604-18416938 REVERSE LENGTH=633;; (*ITAG) Solyc04g072670.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:57222954-57227125 transcript_region:SL2.40ch04:57222954..57227125- go_terms:GO:0003676 functional_description:"Apoptotic chromatin condensation inducer 1 (Fragment) (AHRD V1 *--- B8JJ88_MOUSE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00015093g0103.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|164 NbS00015093g0110.1 protein AED:0.26 eAED:0.26 QI:523|0.71|0.75|0.87|0.71|0.87|8|0|344 NbS00015093g0109.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.28|0.71|0.66|0.42|7|0|833 NbS00060829g0004.1 protein AED:0.24 eAED:0.31 QI:0|0.5|0.22|1|0.5|0.55|9|0|574; (*GB) gi|359477024|ref|XP_002274757.2| (e_value=0.0) PREDICTED: probable cysteine desulfurase-like [Vitis vinifera];; (*SWP) sp|Q8CTA4|CSD_STAES (e_value=1e-18) Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1;; (*ITAG) Solyc11g005830.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:670093-672295 transcript_region:SL2.40ch11:670093..672295+ go_terms:GO:0008152,GO:0030170 functional_description:"NifS-like protein Aminotransferase class V family (AHRD V1 **-- Q30U90_SULDN); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00025433g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|271; (*GB) gi|171854647|dbj|BAG16513.1| (e_value=2e-87) flavonoid glucoyltransferase UGT73E2 [Antirrhinum majus];; (*SWP) sp|Q9ZQ96|U73C3_ARATH (e_value=1e-80) UDP-glycosyltransferase 73C3 OS=Arabidopsis thaliana GN=UGT73C3 PE=2 SV=1;; (*TAIR) AT2G36780.1 (e_value=9e-82) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15417618-15419108 REVERSE LENGTH=496;; (*ITAG) Solyc10g085880.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64242338-64243372 transcript_region:SL2.40ch10:64242338..64243372- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001666g0006.1 protein AED:0.08 eAED:0.08 QI:401|1|1|1|0.77|0.7|10|312|589; (*GB) gi|225426946|ref|XP_002266352.1| (e_value=0.0) PREDICTED: monocopper oxidase-like protein SKU5 [Vitis vinifera];; (*SWP) sp|Q8VXX5|SKS1_ARATH (e_value=0.0) Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1;; (*TAIR) AT4G25240.1 (e_value=0.0) | Symbols: SKS1 | SKU5 similar 1 | chr4:12930539-12933563 FORWARD LENGTH=589;; (*ITAG) Solyc03g083900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47371423-47375428 transcript_region:SL2.40ch03:47371423..47375428- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00015835g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|465; (*GB) gi|21666314|gb|AAM73656.1|AF390211_1 (e_value=0.0) AER [Nicotiana tabacum];; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=9e-69) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G01210.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:84554-85981 FORWARD LENGTH=475;; (*ITAG) Solyc09g014280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5772957-5774339 transcript_region:SL2.40ch09:5772957..5774339+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00015835g0017.1 protein AED:0.27 eAED:0.27 QI:162|0.33|0.25|0.5|0.33|0.25|4|0|505; (*GB) gi|255581071|ref|XP_002531351.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7R7|Y3903_ARATH (e_value=7e-146) BTB/POZ domain-containing protein At3g09030 OS=Arabidopsis thaliana GN=At3g09030 PE=2 SV=1;; (*TAIR) AT3G09030.1 (e_value=5e-147) | Symbols: | BTB/POZ domain-containing protein | chr3:2754841-2756223 FORWARD LENGTH=460;; (*ITAG) Solyc08g081230.1.1 (e_value=1e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61456635-61458026 transcript_region:SL2.40ch08:61456635..61458026- go_terms:GO:0005515,GO:0016020 functional_description:"Potassium channel tetramerization domain-containing protein (AHRD V1 ***- D7MIW8_ARALY); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00015835g0013.1 protein AED:0.31 eAED:0.31 QI:437|1|0.90|1|1|1|11|0|434; (*GB) gi|224090935|ref|XP_002309122.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8NT41|MGTA_CORGL (e_value=1e-43) GDP-mannose-dependent alpha-mannosyltransferase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=mgtA PE=1 SV=1;; (*TAIR) AT5G01220.1 (e_value=0.0) | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2 | chr5:86907-89885 REVERSE LENGTH=510;; (*ITAG) Solyc09g014300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5790323-5796370 transcript_region:SL2.40ch09:5790323..5796370- go_terms:GO:0046510 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 **-- B6T479_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0046510 NbS00015835g0014.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.77|1|0.75|0.88|9|425|247; (*GB) gi|6759446|emb|CAB69851.1| (e_value=6e-136) cell division-like protein [Arabidopsis thaliana];; (*SWP) sp|O36015|YEK3_SCHPO (e_value=8e-67) Putative ribosomal RNA methyltransferase C4F10.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.03c PE=2 SV=1;; (*TAIR) AT5G01230.1 (e_value=4e-122) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:92789-95380 REVERSE LENGTH=309;; (*ITAG) Solyc09g014320.2.1 (e_value=3e-136) genomic_reference:SL2.40ch09 gene_region:5836883-5845280 transcript_region:SL2.40ch09:5836883..5845280- go_terms:GO:0008650 functional_description:"Ribosomal RNA large subunit methyltransferase J family protein (AHRD V1 **** A7APJ4_BABBO); contains Interpro domain(s) IPR015507 Ribosomal RNA methyltransferase J "; GO:0008650 NbS00017636g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.86|0.83|1|0.82|0.87|24|339|1484; (*GB) gi|296081597|emb|CBI20602.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11700.2 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00017636g0009.1 protein AED:0.09 eAED:0.09 QI:91|1|1|1|0.75|0.6|5|242|141; (*GB) gi|225429410|ref|XP_002275650.1| (e_value=2e-60) PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Vitis vinifera];; (*SWP) sp|D7STK2|GATC_VITVI (e_value=5e-62) Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1;; (*TAIR) AT4G32915.1 (e_value=1e-44) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15885549-15886628 FORWARD LENGTH=155;; (*ITAG) Solyc07g063140.1.1 (e_value=1e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:62936062-62936484 transcript_region:SL2.40ch07:62936062..62936484+ go_terms:GO:0006450 functional_description:"Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C (AHRD V1 ***- A3IGR0_9CHRO); contains Interpro domain(s) IPR003837 Glu-tRNAGln amidotransferase, C subunit "; GO:0006450 NbS00011289g0012.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|521; (*GB) gi|255581233|ref|XP_002531429.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8GXR2|PLT6_ARATH (e_value=0.0) Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2;; (*TAIR) AT4G36670.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr4:17287680-17289483 REVERSE LENGTH=493;; (*ITAG) Solyc02g062890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:29413171-29414595 transcript_region:SL2.40ch02:29413171..29414595- go_terms:GO:0005366,GO:0015519 functional_description:"Myo-inositol transporter 2 (AHRD V1 **** ITR2_SCHPO); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005366,GO:0015519 NbS00011289g0008.1 protein AED:0.19 eAED:0.19 QI:0|0|0.33|0.66|1|1|3|0|484; (*GB) gi|156070795|gb|ABU45207.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*SWP) sp|Q9M065|PP352_ARATH (e_value=3e-160) Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1;; (*TAIR) AT4G36680.1 (e_value=2e-161) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17292479-17293717 REVERSE LENGTH=412;; (*ITAG) Solyc02g062910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:29425706-29426956 transcript_region:SL2.40ch02:29425706..29426956- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBF2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015059g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|194; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=8e-125) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G65870.1 (e_value=5e-56) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189;; (*ITAG) Solyc10g055200.1.1 (e_value=3e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:51957093-51957677 transcript_region:SL2.40ch10:51957093..51957677+ functional_description:"Disease resistance response (AHRD V1 ***- D7KM73_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00015059g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|153; (*GB) gi|29468341|gb|AAO85510.1| (e_value=5e-100) SKP1 [Nicotiana benthamiana];; (*SWP) sp|Q39255|SKP1A_ARATH (e_value=1e-80) SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1;; (*TAIR) AT1G75950.1 (e_value=1e-81) | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase kinase-associated protein 1 | chr1:28516715-28517454 FORWARD LENGTH=160;; (*ITAG) Solyc11g042930.1.1 (e_value=6e-94) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:34423755-34426084 transcript_region:SL2.40ch11:34423755..34426084- go_terms:GO:0005515 functional_description:"SKP1 (AHRD V1 ***- Q68GS0_TOBAC); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00015059g0008.1 protein AED:0.28 eAED:0.28 QI:285|0.92|0.92|1|0.61|0.71|14|644|424; (*GB) gi|224080634|ref|XP_002306188.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDW8|HGNAT_MOUSE (e_value=2e-31) Heparan-alpha-glucosaminide N-acetyltransferase OS=Mus musculus GN=Hgsnat PE=1 SV=2;; (*TAIR) AT5G47900.1 (e_value=2e-130) | Symbols: | Protein of unknown function (DUF1624) | chr5:19392408-19394963 FORWARD LENGTH=440;; (*ITAG) Solyc10g055620.1.1 (e_value=3e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52566136-52568727 transcript_region:SL2.40ch10:52566136..52568727+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_MOUSE)"; NbS00020327g0001.1 protein AED:0.23 eAED:0.23 QI:0|0.63|0.58|0.91|1|1|12|0|1577; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=0.0) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=2e-73) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=1e-50) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2722296-2726237 transcript_region:SL2.40ch06:2722296..2726237+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00020327g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0.5|1|1|1|2|483|129; (*GB) gi|350538941|ref|NP_001234622.1| (e_value=4e-18) plant resistance protein [Solanum lycopersicum];; (*ITAG) Solyc06g008450.2.1 (e_value=6e-20) genomic_reference:SL2.40ch06 gene_region:2354703-2358629 transcript_region:SL2.40ch06:2354703..2358629- go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00001377g0006.1 protein AED:0.37 eAED:0.37 QI:35|0.45|0.33|0.91|0.27|0.16|12|0|916; (*GB) gi|225432810|ref|XP_002283562.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g43790-like [Vitis vinifera];; (*SWP) sp|Q9FG85|PP415_ARATH (e_value=3e-164) Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1;; (*TAIR) AT5G43790.1 (e_value=2e-165) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:17592099-17593481 REVERSE LENGTH=460;; (*ITAG) Solyc08g014100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3631169-3632977 transcript_region:SL2.40ch08:3631169..3632977- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00001377g0101.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|111 NbS00001377g0113.1 protein AED:0.17 eAED:0.25 QI:0|0.85|0.62|1|0.57|0.62|8|0|199 NbS00001377g0114.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.33|1|0.8|0.66|6|0|379 NbS00002661g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|294; (*GB) gi|15235952|ref|NP_194296.1| (e_value=4e-55) PPPDE putative thiol peptidase family protein [Arabidopsis thaliana];; (*SWP) sp|Q5PQ09|PPDE1_XENLA (e_value=2e-14) Desumoylating isopeptidase 2 OS=Xenopus laevis GN=pppde1 PE=2 SV=1;; (*TAIR) AT4G25660.1 (e_value=9e-58) | Symbols: | PPPDE putative thiol peptidase family protein | chr4:13083677-13084989 FORWARD LENGTH=255;; (*ITAG) Solyc02g082060.1.1 (e_value=5e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40374340-40374981 transcript_region:SL2.40ch02:40374340..40374981- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 *--- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00002661g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.8|0|0.2|5|0|321; (*GB) gi|12331298|emb|CAC24711.1| (e_value=1e-59) cytochrome P450 [Solanum tuberosum];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-60) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=4e-30) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc02g082070.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:40379812-40382598 transcript_region:SL2.40ch02:40379812..40382598+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00025545g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|367; (*GB) gi|388498124|gb|AFK37128.1| (e_value=6e-100) unknown [Medicago truncatula];; (*SWP) sp|Q3T1J8|CT043_RAT (e_value=1e-25) UPF0549 protein C20orf43 homolog OS=Rattus norvegicus PE=2 SV=1;; (*TAIR) AT5G58020.1 (e_value=3e-82) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | chr5:23485585-23486649 FORWARD LENGTH=354;; (*ITAG) Solyc07g005340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:266473-267654 transcript_region:SL2.40ch07:266473..267654- functional_description:"UPF0549 protein C20orf43 homolog (AHRD V1 *--- C1BN61_9MAXI); contains Interpro domain(s) IPR006735 Protein of unknown function DUF602 "; NbS00025545g0019.1 protein AED:0.15 eAED:0.16 QI:144|0.77|0.8|0.9|1|1|10|0|1325; (*GB) gi|359484826|ref|XP_002276238.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera];; (*TAIR) AT5G58040.1 (e_value=2e-80) | Symbols: ATFIP1[V], FIPS5, ATFIPS5, FIP1[V] | homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196;; (*ITAG) Solyc07g005320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:247287-259892 transcript_region:SL2.40ch07:247287..259892- go_terms:GO:0042802,GO:0003723 functional_description:"Pre-mRNA polyadenylation factor fip1 (AHRD V1 *-*- B6JX34_SCHJY); contains Interpro domain(s) IPR007854 Fip1 "; GO:0042802,GO:0003723 NbS00025545g0018.1 protein AED:0.17 eAED:0.17 QI:496|0.87|0.88|1|0.75|0.77|9|414|617; (*GB) gi|225437237|ref|XP_002282102.1| (e_value=0.0) PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera];; (*SWP) sp|Q9M9Y5|GAUT6_ARATH (e_value=0.0) Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1;; (*TAIR) AT1G06780.1 (e_value=0.0) | Symbols: GAUT6 | galacturonosyltransferase 6 | chr1:2083689-2086853 FORWARD LENGTH=589;; (*ITAG) Solyc07g005360.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:279497-286575 transcript_region:SL2.40ch07:279497..286575- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9HBZ3_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00025545g0016.1 protein AED:0.41 eAED:0.46 QI:0|1|0|1|1|1|2|0|60 NbS00025545g0025.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|0.5|2|0|81 NbS00025545g0008.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.66|1|1|3|0|113; (*GB) gi|224056801|ref|XP_002299030.1| (e_value=8e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT5G44400.1 (e_value=1e-16) | Symbols: | FAD-binding Berberine family protein | chr5:17886365-17888071 REVERSE LENGTH=537;; (*ITAG) Solyc02g069690.1.1 (e_value=5e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34101607-34103250 transcript_region:SL2.40ch02:34101607..34103250- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH5_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00008755g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|726; (*GB) gi|37964399|gb|AAR06252.1| (e_value=0.0) stigma/style ABC transporter [Nicotiana tabacum];; (*SWP) sp|Q9FNB5|AB6G_ARATH (e_value=0.0) ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1;; (*TAIR) AT5G13580.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:4370879-4373062 FORWARD LENGTH=727;; (*ITAG) Solyc04g010200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3520574-3522730 transcript_region:SL2.40ch04:3520574..3522730+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 6 (AHRD V1 ***- AB6G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00019300g0011.1 protein AED:0.16 eAED:0.20 QI:0|0.6|0.5|0.83|0.8|0.66|6|0|312; (*GB) gi|389986109|gb|AFL46172.1| (e_value=9e-167) jasmonate ZIM domain protein g [Nicotiana attenuata];; (*SWP) sp|Q9LVI4|TIF6B_ARATH (e_value=3e-23) Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1;; (*TAIR) AT3G17860.2 (e_value=1e-24) | Symbols: JAZ3, JAI3, TIFY6B | jasmonate-zim-domain protein 3 | chr3:6121083-6122691 FORWARD LENGTH=339;; (*ITAG) Solyc03g118540.2.1 (e_value=5e-68) genomic_reference:SL2.40ch03 gene_region:61483425-61486803 transcript_region:SL2.40ch03:61483425..61486803+ go_terms:GO:0042802 functional_description:"Protein TIFY 6B (AHRD V1 **-- TIF6B_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0042802 NbS00019300g0014.1 protein AED:0.28 eAED:0.42 QI:76|0|0|1|0|0|4|0|243; (*GB) gi|357458595|ref|XP_003599578.1| (e_value=1e-90) NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula];; (*SWP) sp|A0A381|RR7_COFAR (e_value=3e-59) 30S ribosomal protein S7, chloroplastic OS=Coffea arabica GN=rps7 PE=3 SV=1;; (*ITAG) ATCG00900.1 (e_value=3e-59) | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e family protein | chrC:97478-97945 REVERSE LENGTH=155;; (*ITAG) Solyc11g021130.1.1 (e_value=4e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13369106-13370634 transcript_region:SL2.40ch11:13369106..13370634- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S7 chloroplastic (AHRD V1 *-*- D3WBE1_9BORA); contains Interpro domain(s) IPR005717 Ribosomal protein S7, bacterial-type "; GO:0005840,GO:0015935 NbS00019300g0013.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|95; (*GB) gi|5913979|dbj|BAA84541.1| (e_value=2e-44) NADH dehydrogenase ND2 subunit [Beta vulgaris subsp. vulgaris];; (*SWP) sp|P0CD47|NU2C2_SOLLC (e_value=2e-43) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum lycopersicum GN=ndhB2 PE=3 SV=1;; (*ITAG) Solyc09g061460.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54753885-54754777 transcript_region:SL2.40ch09:54753885..54754777+ go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D2KLR3_OLEEU); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00019300g0012.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|87; (*GB) gi|4688657|emb|CAB41473.1| (e_value=1e-45) ndhB [Solanum nigrum];; (*SWP) sp|P0CD07|NU2C2_OENAR (e_value=1e-43) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera argillicola GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=1e-45) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00034990g0013.1 protein AED:0.09 eAED:0.09 QI:435|0.90|0.91|1|0.72|0.58|12|854|722; (*GB) gi|225464265|ref|XP_002271012.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein HDG11-like [Vitis vinifera];; (*SWP) sp|Q9FX31|HDG11_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1;; (*TAIR) AT1G73360.1 (e_value=0.0) | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722;; (*ITAG) Solyc06g072310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40978399-40981854 transcript_region:SL2.40ch06:40978399..40981854- go_terms:GO:0003700 functional_description:"Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (AHRD V1 **** PDF2_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700 NbS00034990g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.95|0.95|1|0.95|0.90|21|286|1067; (*GB) gi|84688906|gb|ABC61502.1| (e_value=0.0) AGO1-1, partial [Nicotiana benthamiana];; (*SWP) sp|Q7XSA2|AGO1B_ORYSJ (e_value=0.0) Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3;; (*TAIR) AT1G48410.1 (e_value=0.0) | Symbols: AGO1 | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr1:17886285-17891892 REVERSE LENGTH=1048;; (*ITAG) Solyc06g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00034990g0011.1 protein AED:0.13 eAED:0.13 QI:153|0.8|0.83|1|0.8|0.66|6|389|118; (*GB) gi|356562483|ref|XP_003549500.1| (e_value=1e-53) PREDICTED: small nuclear ribonucleoprotein E [Glycine max];; (*SWP) sp|A1XQR9|RUXE_PIG (e_value=2e-40) Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1;; (*TAIR) AT2G18740.1 (e_value=5e-54) | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:8123334-8124710 FORWARD LENGTH=88;; (*ITAG) Solyc03g098470.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:54202388-54206465 transcript_region:SL2.40ch03:54202388..54206465- go_terms:GO:0005515 functional_description:"Small nuclear ribonucleoprotein E (AHRD V1 ***- B6SXC3_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0005515 NbS00060251g0001.1 protein AED:0.06 eAED:0.06 QI:330|1|0.87|1|1|1|8|363|760; (*GB) gi|296082642|emb|CBI21647.3| (e_value=5e-85) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g080000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60536402-60540654 transcript_region:SL2.40ch08:60536402..60540654+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016146 Calponin-homology "; NbS00009880g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|419; (*GB) gi|255541034|ref|XP_002511581.1| (e_value=2e-179) triacylglycerol lipase, putative [Ricinus communis];; (*SWP) sp|Q948R1|PLA11_ARATH (e_value=6e-166) Phospholipase A(1) DAD1, chloroplastic OS=Arabidopsis thaliana GN=DAD1 PE=1 SV=1;; (*TAIR) AT2G44810.1 (e_value=1e-164) | Symbols: DAD1 | alpha/beta-Hydrolases superfamily protein | chr2:18479095-18480168 FORWARD LENGTH=357;; (*ITAG) Solyc10g038170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:20298469-20299599 transcript_region:SL2.40ch10:20298469..20299599+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase family protein (AHRD V1 ***- Q2RAM0_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00045995g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|255538916|ref|XP_002510523.1| (e_value=2e-20) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G75710.1 (e_value=2e-21) | Symbols: | C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462;; (*ITAG) Solyc04g081370.2.1 (e_value=1e-27) genomic_reference:SL2.40ch04 gene_region:62972909-62976305 transcript_region:SL2.40ch04:62972909..62976305+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00002650g0006.1 protein AED:0.58 eAED:0.73 QI:0|0.5|0|0.66|1|1|3|0|237; (*GB) gi|255542436|ref|XP_002512281.1| (e_value=4e-62) eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis];; (*SWP) sp|Q54RF3|EI2BE_DICDI (e_value=2e-29) Translation initiation factor eIF-2B subunit epsilon OS=Dictyostelium discoideum GN=eif2b5 PE=3 SV=1;; (*TAIR) AT2G34970.1 (e_value=1e-49) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00002894g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|386; (*GB) gi|78191448|gb|ABB29945.1| (e_value=0.0) ADP/ATP translocator-like [Solanum tuberosum];; (*SWP) sp|P25083|ADT1_SOLTU (e_value=0.0) ADP,ATP carrier protein, mitochondrial OS=Solanum tuberosum GN=ANT PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=0.0) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00046658g0013.1 protein AED:0.16 eAED:0.18 QI:0|0|0.33|1|0|0.33|3|159|467; (*GB) gi|224055407|ref|XP_002298501.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64733|U87A2_ARATH (e_value=2e-156) UDP-glycosyltransferase 87A2 OS=Arabidopsis thaliana GN=UGT87A2 PE=2 SV=1;; (*TAIR) AT2G30140.1 (e_value=2e-157) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:12872200-12873691 FORWARD LENGTH=455;; (*ITAG) Solyc06g082300.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44459676-44461502 transcript_region:SL2.40ch06:44459676..44461502- go_terms:GO:0008194 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A9X3L6_9ASTR); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008194 NbS00046658g0006.1 protein AED:0.21 eAED:0.27 QI:0|0|0.66|1|1|1|3|369|364; (*GB) gi|359478542|ref|XP_003632130.1| (e_value=1e-176) PREDICTED: mitoferrin-like [Vitis vinifera];; (*SWP) sp|Q55DY8|MFRN_DICDI (e_value=4e-64) Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1;; (*TAIR) AT1G07030.1 (e_value=2e-158) | Symbols: | Mitochondrial substrate carrier family protein | chr1:2158631-2160524 REVERSE LENGTH=326;; (*ITAG) Solyc06g082290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44454789-44458090 transcript_region:SL2.40ch06:44454789..44458090- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- O82049_RIBNI); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00046658g0010.1 protein AED:0.39 eAED:0.45 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|225282|prf||1211235T (e_value=3e-78) RNA polymerase beta;; (*SWP) sp|Q8S8X9|RPOB_ATRBE (e_value=1e-79) DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=1e-78) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g035870.1.1 (e_value=3e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29020873-29022576 transcript_region:SL2.40ch12:29020873..29022576+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WBK7_9AQUA); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00046658g0009.1 protein AED:0.41 eAED:0.63 QI:0|0|0|1|0|0|3|0|130; (*GB) gi|297837963|ref|XP_002886863.1| (e_value=1e-26) hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P11705|RPOC1_SPIOL (e_value=1e-23) DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=2e-23) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680; NbS00046658g0012.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|87; (*GB) gi|225281|prf||1211235R (e_value=3e-41) rpoC-like ORF 151;; (*SWP) sp|A6MMB3|RPOC1_CHLSC (e_value=5e-41) DNA-directed RNA polymerase subunit beta' OS=Chloranthus spicatus GN=rpoC1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=9e-42) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc12g035870.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29020873-29022576 transcript_region:SL2.40ch12:29020873..29022576+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WBK7_9AQUA); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00046658g0011.1 protein AED:0.44 eAED:0.84 QI:0|0|0|1|0|0|2|0|81 NbS00055985g0014.1 protein AED:0.06 eAED:0.06 QI:264|1|1|1|0.66|0.75|4|231|267; (*GB) gi|225430694|ref|XP_002263902.1| (e_value=4e-89) PREDICTED: dolichyldiphosphatase 1 [Vitis vinifera];; (*TAIR) AT5G66450.1 (e_value=1e-68) | Symbols: | Phosphatidic acid phosphatase (PAP2) family protein | chr5:26534801-26535951 FORWARD LENGTH=286;; (*ITAG) Solyc02g062580.2.1 (e_value=9e-128) genomic_reference:SL2.40ch02 gene_region:28879805-28883422 transcript_region:SL2.40ch02:28879805..28883422+ go_terms:GO:0016020 functional_description:"Dolichyldiphosphatase 1 (AHRD V1 *--- C1C1U9_9MAXI); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0016020 NbS00055985g0015.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|1|1|3|0|292; (*GB) gi|321268093|gb|ADW78849.1| (e_value=8e-161) galactinol synthase [Solanum tuberosum];; (*TAIR) AT2G47180.1 (e_value=1e-145) | Symbols: AtGolS1, GolS1 | galactinol synthase 1 | chr2:19369049-19370372 REVERSE LENGTH=344;; (*ITAG) Solyc02g084980.2.1 (e_value=5e-163) genomic_reference:SL2.40ch02 gene_region:42590167-42591767 transcript_region:SL2.40ch02:42590167..42591767- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- C7G304_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00055985g0019.1 protein AED:0.20 eAED:0.20 QI:0|0.6|0.66|1|1|1|6|0|301; (*GB) gi|82621186|gb|ABB86281.1| (e_value=2e-175) transcription factor APFI-like [Solanum tuberosum];; (*SWP) sp|Q9FWR5|GCA1_ARATH (e_value=7e-157) Gamma carbonic anhydrase 1, mitochondrial OS=Arabidopsis thaliana GN=GAMMACA1 PE=1 SV=1;; (*TAIR) AT1G19580.1 (e_value=5e-158) | Symbols: GAMMA CA1 | gamma carbonic anhydrase 1 | chr1:6774937-6777092 FORWARD LENGTH=275;; (*ITAG) Solyc02g062600.2.1 (e_value=1e-180) genomic_reference:SL2.40ch02 gene_region:28894721-28902716 transcript_region:SL2.40ch02:28894721..28902716- go_terms:GO:0008415,GO:0004089 functional_description:"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (AHRD V1 *--- DAPH_THETN); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00041275g0007.1 protein AED:0.03 eAED:0.06 QI:295|0|0.33|1|0.5|0.66|3|0|591; (*GB) gi|225441317|ref|XP_002275980.1| (e_value=0.0) PREDICTED: regulatory protein NPR5 [Vitis vinifera];; (*SWP) sp|Q9ZVC2|NPR5_ARATH (e_value=0.0) Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1;; (*TAIR) AT2G41370.1 (e_value=0.0) | Symbols: BOP2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491;; (*ITAG) Solyc04g040220.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:31130616-31133135 transcript_region:SL2.40ch04:31130616..31133135- go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00000793g0004.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|372; (*GB) gi|156763850|emb|CAO99127.1| (e_value=2e-150) strictosidine synthase-like protein [Nicotiana tabacum];; (*SWP) sp|P94111|STS1_ARATH (e_value=2e-63) Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2;; (*TAIR) AT3G57030.1 (e_value=5e-136) | Symbols: | Calcium-dependent phosphotriesterase superfamily protein | chr3:21101653-21103204 REVERSE LENGTH=374;; (*ITAG) Solyc10g079610.1.1 (e_value=3e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00000793g0005.1 protein AED:0.26 eAED:0.28 QI:0|0.25|0.2|1|0.25|0.4|5|0|195; (*GB) gi|356566161|ref|XP_003551303.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100786806 [Glycine max];; (*TAIR) AT1G78710.1 (e_value=4e-39) | Symbols: TBL42 | TRICHOME BIREFRINGENCE-LIKE 42 | chr1:29602708-29604557 FORWARD LENGTH=359;; (*ITAG) Solyc07g055800.2.1 (e_value=4e-74) genomic_reference:SL2.40ch07 gene_region:61048180-61051087 transcript_region:SL2.40ch07:61048180..61051087+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00040394g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|78; (*ITAG) Solyc06g076310.1.1 (e_value=1e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:43801874-43802125 transcript_region:SL2.40ch06:43801874..43802125+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009276g0004.1 protein AED:0.25 eAED:0.25 QI:53|0.71|0.73|1|0.71|0.6|15|382|385; (*GB) gi|1750380|gb|AAB39248.1| (e_value=0.0) NADP-isocitrate dehydrogenase [Eucalyptus globulus];; (*SWP) sp|P50218|IDHC_TOBAC (e_value=0.0) Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G65930.1 (e_value=0.0) | Symbols: cICDH | cytosolic NADP+-dependent isocitrate dehydrogenase | chr1:24539088-24541861 FORWARD LENGTH=410;; (*ITAG) Solyc11g011930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4860240-4865923 transcript_region:SL2.40ch11:4860240..4865923- go_terms:GO:0055114 functional_description:"Isocitrate dehydrogenase (AHRD V1 ***- D2D324_GOSHI); contains Interpro domain(s) IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic "; GO:0055114 NbS00023618g0007.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|605; (*GB) gi|225427070|ref|XP_002275784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g31920 [Vitis vinifera];; (*SWP) sp|Q9C6T2|PPR68_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1;; (*TAIR) AT1G31920.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:11461864-11463684 REVERSE LENGTH=606;; (*ITAG) Solyc08g076150.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57341681-57343533 transcript_region:SL2.40ch08:57341681..57343533- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGN9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00023618g0019.1 protein AED:0.13 eAED:0.16 QI:416|0.25|0.6|0.8|0.5|0.4|5|0|76; (*GB) gi|456755|emb|CAA52897.1| (e_value=3e-20) G-box binding protein [Solanum lycopersicum];; (*TAIR) AT1G32150.1 (e_value=6e-15) | Symbols: bZIP68, AtbZIP68 | basic region/leucine zipper transcription factor 68 | chr1:11566022-11568317 FORWARD LENGTH=389;; (*ITAG) Solyc08g076100.2.1 (e_value=6e-27) genomic_reference:SL2.40ch08 gene_region:57304940-57314726 transcript_region:SL2.40ch08:57304940..57314726- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00023618g0013.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.42|0.85|1|1|7|0|270; (*GB) gi|5381313|gb|AAD42938.1|AF084972_1 (e_value=1e-118) G-Box binding protein 2 [Catharanthus roseus];; (*SWP) sp|P23922|HBP1A_WHEAT (e_value=6e-30) Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT2G35530.1 (e_value=8e-103) | Symbols: bZIP16, AtbZIP16 | basic region/leucine zipper transcription factor 16 | chr2:14923280-14926025 REVERSE LENGTH=409;; (*ITAG) Solyc08g076100.2.1 (e_value=2e-143) genomic_reference:SL2.40ch08 gene_region:57304940-57314726 transcript_region:SL2.40ch08:57304940..57314726- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00009905g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|94 NbS00025364g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|1|1|6|300|277; (*GB) gi|224122558|ref|XP_002330511.1| (e_value=3e-102) single myb histone [Populus trichocarpa];; (*SWP) sp|F4I7L1|TRB4_ARATH (e_value=9e-64) Telomere repeat-binding factor 4 OS=Arabidopsis thaliana GN=At1g17520 PE=2 SV=2;; (*TAIR) AT1G17520.1 (e_value=2e-65) | Symbols: | Homeodomain-like/winged-helix DNA-binding family protein | chr1:6024959-6027224 REVERSE LENGTH=296;; (*ITAG) Solyc07g040920.2.1 (e_value=1e-98) genomic_reference:SL2.40ch07 gene_region:48363439-48368725 transcript_region:SL2.40ch07:48363439..48368725- go_terms:GO:0003691,GO:0043047 functional_description:"Single myb histone (AHRD V1 **-* B9N5F4_POPTR); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0003691,GO:0043047 NbS00025364g0015.1 protein AED:0.28 eAED:0.29 QI:299|0.92|0.92|1|0.92|0.92|14|0|446; (*GB) gi|121501708|gb|ABM55249.1| (e_value=0.0) casein kinase [Beta vulgaris];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G26100.1 (e_value=0.0) | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227885-13230508 REVERSE LENGTH=450;; (*ITAG) Solyc07g040720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46775853-46782305 transcript_region:SL2.40ch07:46775853..46782305+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00025364g0011.1 protein AED:0.02 eAED:0.02 QI:10|1|1|1|1|1|4|286|413; (*GB) gi|2500517|sp|Q40471.1|IF4A9_TOBAC (e_value=0.0) RecName: Full=Eukaryotic initiation factor 4A-9; Short=eIF-4A-9; AltName: Full=ATP-dependent RNA helicase eIF4A-9;; (*SWP) sp|Q40471|IF4A9_TOBAC (e_value=0.0) Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=0.0) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc12g095990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63417253-63419388 transcript_region:SL2.40ch12:63417253..63419388- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00025364g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|388499238|gb|AFK37685.1| (e_value=2e-26) unknown [Medicago truncatula];; (*TAIR) AT5G11970.1 (e_value=7e-20) | Symbols: | Protein of unknown function (DUF3511) | chr5:3863289-3863606 REVERSE LENGTH=105;; (*ITAG) Solyc07g040730.1.1 (e_value=2e-37) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:46786386-46786763 transcript_region:SL2.40ch07:46786386..46786763- functional_description:"Unknown Protein (AHRD V1)"; NbS00029961g0007.1 protein AED:0.16 eAED:0.16 QI:144|1|1|1|1|1|2|307|533; (*GB) gi|225439633|ref|XP_002266471.1| (e_value=2e-96) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|F4ISY0|Y2837_ARATH (e_value=7e-46) WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1;; (*TAIR) AT2G38370.1 (e_value=6e-47) | Symbols: | Plant protein of unknown function (DUF827) | chr2:16072184-16074168 REVERSE LENGTH=522;; (*ITAG) Solyc06g050350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29452798-29455581 transcript_region:SL2.40ch06:29452798..29455581- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q7XIW7_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00029961g0006.1 protein AED:0.16 eAED:0.16 QI:30|0.66|0.14|1|0.83|0.85|7|0|262; (*GB) gi|297806531|ref|XP_002871149.1| (e_value=2e-48) hypothetical protein ARALYDRAFT_487324 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G05310.2 (e_value=7e-51) | Symbols: | TLC ATP/ADP transporter | chr5:1571271-1574341 FORWARD LENGTH=496;; (*ITAG) Solyc06g050210.2.1 (e_value=1e-81) genomic_reference:SL2.40ch06 gene_region:29171032-29184391 transcript_region:SL2.40ch06:29171032..29184391+ functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 ***- B2IEC2_BEII9)"; NbS00047839g0003.1 protein AED:0.14 eAED:0.14 QI:133|1|1|1|0.83|1|7|92|307; (*GB) gi|262036878|dbj|BAI47580.1| (e_value=4e-162) beta-carotene hydroxylase [Ipomoea nil];; (*SWP) sp|O49815|BCH1_CAPAN (e_value=2e-155) Beta-carotene hydroxylase 1, chloroplastic OS=Capsicum annuum GN=CA1 PE=1 SV=1;; (*TAIR) AT4G25700.1 (e_value=1e-133) | Symbols: BETA-OHASE 1, B1, chy1, BCH1 | beta-hydroxylase 1 | chr4:13094142-13095866 REVERSE LENGTH=310;; (*ITAG) Solyc03g007960.2.1 (e_value=2e-163) genomic_reference:SL2.40ch03 gene_region:2447872-2450289 transcript_region:SL2.40ch03:2447872..2450289+ go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 2"; GO:0010291 NbS00005823g0009.1 protein AED:0.30 eAED:0.32 QI:0|0.92|0.78|1|0.92|0.92|14|0|850; (*GB) gi|225451661|ref|XP_002276313.1| (e_value=0.0) PREDICTED: transcription-repair-coupling factor-like [Vitis vinifera];; (*SWP) sp|Q55750|MFD_SYNY3 (e_value=5e-175) Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mfd PE=3 SV=1;; (*TAIR) AT3G02060.1 (e_value=0.0) | Symbols: | DEAD/DEAH box helicase, putative | chr3:354409-358319 FORWARD LENGTH=823;; (*ITAG) Solyc02g094590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49704269-49721577 transcript_region:SL2.40ch02:49704269..49721577+ go_terms:GO:0008026,GO:0005524,GO:0006355,GO:0006281 functional_description:"Transcription-repair coupling factor (AHRD V1 ***- B4WRL4_9SYNE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524,GO:0006355,GO:0006281 NbS00005823g0006.1 protein AED:0.23 eAED:0.25 QI:675|0.62|0.77|1|0.87|0.77|9|301|243; (*GB) gi|357508501|ref|XP_003624539.1| (e_value=4e-104) DNA cross-link repair protein SNM1 [Medicago truncatula];; (*SWP) sp|Q38961|SNM1_ARATH (e_value=5e-93) DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1;; (*TAIR) AT3G26680.3 (e_value=4e-94) | Symbols: SNM1 | DNA repair metallo-beta-lactamase family protein | chr3:9801309-9803517 FORWARD LENGTH=484;; (*ITAG) Solyc08g067250.2.1 (e_value=8e-29) genomic_reference:SL2.40ch08 gene_region:53497454-53507180 transcript_region:SL2.40ch08:53497454..53507180+ functional_description:"DNA cross-link repair 1A protein (AHRD V1 *-*- B0XKM0_CULQU); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00016899g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|203; (*GB) gi|224107919|ref|XP_002314653.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14660.1 (e_value=6e-34) | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178;; (*ITAG) Solyc09g083340.1.1 (e_value=6e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64404324-64404842 transcript_region:SL2.40ch09:64404324..64404842- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit RPB7 (AHRD V1 **** RPB7_ARATH); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003899 NbS00016899g0001.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|225432912|ref|XP_002284210.1| (e_value=8e-31) PREDICTED: PRA1 family protein D-like [Vitis vinifera];; (*SWP) sp|P93829|PRA1D_ARATH (e_value=2e-27) PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1;; (*TAIR) AT1G04260.1 (e_value=1e-28) | Symbols: MPI7, MPIP7, PRA1.D | CAMV movement protein interacting protein 7 | chr1:1140749-1141297 REVERSE LENGTH=182;; (*ITAG) Solyc09g083320.1.1 (e_value=4e-82) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64392184-64392690 transcript_region:SL2.40ch09:64392184..64392690- go_terms:GO:0005515 functional_description:"Prenylated rab acceptor PRA1 (AHRD V1 ***- A2Q469_MEDTR); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; GO:0005515 NbS00016899g0007.1 protein AED:0.23 eAED:0.23 QI:346|1|0.91|1|0.63|0.75|12|0|422; (*GB) gi|3121837|sp|O04940.1|CDS1_SOLTU (e_value=0.0) RecName: Full=Phosphatidate cytidylyltransferase; AltName: Full=CDP-DAG synthase; AltName: Full=CDP-DG synthase; AltName: Full=CDP-diacylglycerol synthase; Short=CDS; AltName: Full=CDP-diglyceride pyrophosphorylase; AltName: Full=CDP-diglyceride synthase; AltName: Full=CTP:phosphatidate cytidylyltransferase;; (*SWP) sp|O04940|CDS1_SOLTU (e_value=0.0) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G22340.1 (e_value=0.0) | Symbols: CDS2 | cytidinediphosphate diacylglycerol synthase 2 | chr4:11800150-11802549 REVERSE LENGTH=423;; (*ITAG) Solyc09g083330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64394232-64401859 transcript_region:SL2.40ch09:64394232..64401859- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RXC8_RICCO); contains Interpro domain(s) IPR016720 Phosphatidate cytidylyltransferase, eukaryota "; GO:0004605 NbS00024071g0012.1 protein AED:0.30 eAED:0.30 QI:24|0.71|0.62|1|0|0.12|8|835|156; (*GB) gi|255558330|ref|XP_002520192.1| (e_value=2e-59) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G59840.2 (e_value=7e-58) | Symbols: CCB4 | cofactor assembly of complex C | chr1:22026569-22028174 FORWARD LENGTH=297;; (*ITAG) Solyc04g005090.2.1 (e_value=2e-79) genomic_reference:SL2.40ch04 gene_region:73003-77723 transcript_region:SL2.40ch04:73003..77723- functional_description:"Uncharacterized conserved membrane protein (AHRD V1 **-- A5GTC4_SYNR3)"; NbS00024071g0014.1 protein AED:0.42 eAED:0.43 QI:13|0.8|0.5|0.83|1|1|6|0|267; (*GB) gi|350537893|ref|NP_001233804.1| (e_value=3e-178) protein phosphatase 2A catalytic subunit [Solanum lycopersicum];; (*SWP) sp|Q07098|PP2A2_ARATH (e_value=4e-176) Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Arabidopsis thaliana GN=PP2A2 PE=1 SV=1;; (*TAIR) AT1G10430.1 (e_value=3e-177) | Symbols: PP2A-2 | protein phosphatase 2A-2 | chr1:3428705-3430437 REVERSE LENGTH=306;; (*ITAG) Solyc01g011340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00024071g0013.1 protein AED:0.04 eAED:0.04 QI:161|1|1|1|1|1|3|311|265; (*GB) gi|147793149|emb|CAN73090.1| (e_value=8e-79) hypothetical protein VITISV_028723 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-41) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G70000.2 (e_value=4e-54) | Symbols: | myb-like transcription factor family protein | chr1:26363674-26364635 REVERSE LENGTH=261;; (*ITAG) Solyc04g005100.2.1 (e_value=3e-101) genomic_reference:SL2.40ch04 gene_region:80661-82139 transcript_region:SL2.40ch04:80661..82139+ go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 *-** A7UMB2_ROSHC); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00032648g0006.1 protein AED:0.22 eAED:0.23 QI:74|0.90|0.83|1|0.81|0.66|12|458|413; (*GB) gi|225435291|ref|XP_002282279.1| (e_value=0.0) PREDICTED: probable serine/threonine-protein kinase DDB_G0279405-like [Vitis vinifera];; (*SWP) sp|Q54WW7|Y0010_DICDI (e_value=2e-66) Probable serine/threonine-protein kinase DDB_G0279405 OS=Dictyostelium discoideum GN=DDB_G0279405 PE=3 SV=1;; (*TAIR) AT5G60550.1 (e_value=0.0) | Symbols: GRIK2, ATSNAK1 | geminivirus rep interacting kinase 2 | chr5:24340135-24342356 FORWARD LENGTH=407;; (*ITAG) Solyc11g069310.1.1 (e_value=1e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51007185-51010200 transcript_region:SL2.40ch11:51007185..51010200+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q8LPG6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00032648g0001.1 protein AED:0.20 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|400; (*GB) gi|255578874|ref|XP_002530291.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FKJ0|FK132_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1;; (*TAIR) AT5G60570.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:24348713-24349894 FORWARD LENGTH=393;; (*ITAG) Solyc11g069320.1.1 (e_value=3e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51014957-51015613 transcript_region:SL2.40ch11:51014957..51015613+ functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTV4_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00015130g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0.5|1|1|1|2|360|260; (*GB) gi|359488708|ref|XP_002274748.2| (e_value=1e-75) PREDICTED: UDP-glycosyltransferase 90A1-like [Vitis vinifera];; (*SWP) sp|Q9ZVX4|U90A1_ARATH (e_value=1e-64) UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1 PE=2 SV=1;; (*TAIR) AT5G14860.1 (e_value=1e-69) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4805887-4807759 FORWARD LENGTH=492;; (*ITAG) Solyc03g114180.2.1 (e_value=8e-106) genomic_reference:SL2.40ch03 gene_region:58239856-58242968 transcript_region:SL2.40ch03:58239856..58242968- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00015130g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|570; (*GB) gi|255540717|ref|XP_002511423.1| (e_value=0.0) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|O80742|PUB19_ARATH (e_value=5e-126) U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1;; (*TAIR) AT1G60190.1 (e_value=4e-127) | Symbols: | ARM repeat superfamily protein | chr1:22198403-22200463 FORWARD LENGTH=686;; (*ITAG) Solyc03g114160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58229802-58231850 transcript_region:SL2.40ch03:58229802..58231850+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00015130g0010.1 protein AED:0.12 eAED:0.12 QI:0|1|0.9|1|1|1|10|658|512; (*GB) gi|225457075|ref|XP_002283132.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SU63|AL2B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1;; (*TAIR) AT3G48000.1 (e_value=0.0) | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase 2B4 | chr3:17717082-17719843 REVERSE LENGTH=538;; (*ITAG) Solyc03g114150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58222807-58227323 transcript_region:SL2.40ch03:58222807..58227323+ go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** Q1AFF6_9ROSI); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00015130g0006.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|89 NbS00014709g0008.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.66|0.5|0.33|3|0|305; (*GB) gi|225445893|ref|XP_002276492.1| (e_value=9e-103) PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like [Vitis vinifera];; (*SWP) sp|Q9C688|RAVL3_ARATH (e_value=4e-90) AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1;; (*TAIR) AT1G51120.1 (e_value=3e-91) | Symbols: | AP2/B3 transcription factor family protein | chr1:18938091-18939149 FORWARD LENGTH=352;; (*ITAG) Solyc03g083110.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46473739-46475572 transcript_region:SL2.40ch03:46473739..46475572+ go_terms:GO:0003677,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 **** B9IMF3_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00014709g0007.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|527; (*GB) gi|298205228|emb|CBI17287.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43490.1 (e_value=6e-19) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469256 REVERSE LENGTH=185;; (*ITAG) Solyc12g098470.1.1 (e_value=2e-122) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64302382-64313454 transcript_region:SL2.40ch12:64302382..64313454- functional_description:"At5g43490-like protein (Fragment) (AHRD V1 *-*- Q6XWB0_ARATH)"; NbC25577290g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|255563526|ref|XP_002522765.1| (e_value=6e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09950.1 (e_value=1e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3060354-3060632 REVERSE LENGTH=92;; (*ITAG) Solyc07g065410.1.1 (e_value=8e-38) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:64402753-64403058 transcript_region:SL2.40ch07:64402753..64403058+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009437g0007.1 protein AED:0.16 eAED:0.17 QI:0|0.77|0.6|1|0.33|0.2|10|387|913; (*GB) gi|255585740|ref|XP_002533551.1| (e_value=0.0) ubiquitin ligase protein cop1, putative [Ricinus communis];; (*SWP) sp|Q9LJR3|SPA3_ARATH (e_value=0.0) Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1;; (*TAIR) AT3G15354.1 (e_value=0.0) | Symbols: SPA3 | SPA1-related 3 | chr3:5169327-5172480 REVERSE LENGTH=837;; (*ITAG) Solyc07g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62912031-62920927 transcript_region:SL2.40ch07:62912031..62920927- go_terms:GO:0042802 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00009437g0008.1 protein AED:0.28 eAED:0.28 QI:0|0.6|0.33|1|0.8|0.66|6|0|531; (*GB) gi|224128111|ref|XP_002329084.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5QQ56|XYLT1_CANFA (e_value=7e-18) Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1;; (*TAIR) AT4G27480.2 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc12g013850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4639057-4641430 transcript_region:SL2.40ch12:4639057..4641430- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00057776g0004.1 protein AED:0.12 eAED:0.12 QI:140|1|1|1|0.75|1|5|341|240; (*GB) gi|4887020|gb|AAD32146.1|AF123508_1 (e_value=5e-151) Nt-iaa28 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24407|IAA16_ARATH (e_value=8e-103) Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1;; (*TAIR) AT3G04730.1 (e_value=6e-104) | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236;; (*ITAG) Solyc01g097290.2.1 (e_value=7e-137) genomic_reference:SL2.40ch01 gene_region:79957345-79960205 transcript_region:SL2.40ch01:79957345..79960205+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00006170g0003.1 protein AED:0.31 eAED:0.31 QI:1809|0|0.5|0.75|1|1|4|315|66 NbS00041324g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|49|173 NbS00051544g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|104|744; (*GB) gi|225440714|ref|XP_002275038.1| (e_value=0.0) PREDICTED: chaperone protein ClpB1-like [Vitis vinifera];; (*SWP) sp|P42730|CLPB1_ARATH (e_value=3e-21) Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2;; (*TAIR) AT3G52490.1 (e_value=5e-149) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc10g082000.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62233723-62237147 transcript_region:SL2.40ch10:62233723..62237147- go_terms:GO:0019538 functional_description:"Heat shock-like protein (AHRD V1 **-- B5A254_ARATH); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00016655g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|97; (*GB) gi|224125548|ref|XP_002319613.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19900.1 (e_value=3e-29) | Symbols: | glyoxal oxidase-related protein | chr1:6907038-6908684 REVERSE LENGTH=548;; (*ITAG) Solyc07g006660.1.1 (e_value=5e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1525141-1526802 transcript_region:SL2.40ch07:1525141..1526802- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00016655g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|255542400|ref|XP_002512263.1| (e_value=2e-21) Galactose oxidase precursor, putative [Ricinus communis];; (*TAIR) AT1G14430.1 (e_value=5e-20) | Symbols: | glyoxal oxidase-related protein | chr1:4934359-4936053 FORWARD LENGTH=564;; (*ITAG) Solyc07g006660.1.1 (e_value=7e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1525141-1526802 transcript_region:SL2.40ch07:1525141..1526802- functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00055537g0003.1 protein AED:0.01 eAED:0.01 QI:289|1|0.66|1|1|1|3|363|160; (*GB) gi|83283997|gb|ABC01906.1| (e_value=1e-46) unknown [Solanum tuberosum];; (*TAIR) AT1G01490.2 (e_value=5e-22) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:180401-182066 REVERSE LENGTH=177;; (*ITAG) Solyc03g007870.2.1 (e_value=1e-49) genomic_reference:SL2.40ch03 gene_region:2399937-2401187 transcript_region:SL2.40ch03:2399937..2401187- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q8S5W0_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00041839g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|528; (*GB) gi|225457305|ref|XP_002281450.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100263964 [Vitis vinifera];; (*SWP) sp|Q9LDD4|ARID2_ARATH (e_value=1e-21) AT-rich interactive domain-containing protein 2 OS=Arabidopsis thaliana GN=ARID2 PE=2 SV=1;; (*TAIR) AT1G26580.1 (e_value=2e-57) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9185620-9187213 FORWARD LENGTH=493;; (*ITAG) Solyc03g115440.1.1 (e_value=2e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:59200206-59201528 transcript_region:SL2.40ch03:59200206..59201528+ go_terms:GO:0003677 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677 NbS00006931g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|4|204|310; (*GB) gi|225441904|ref|XP_002284451.1| (e_value=4e-179) PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Vitis vinifera];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=8e-178) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=6e-179) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60693789-60698023 transcript_region:SL2.40ch10:60693789..60698023+ functional_description:"Solute carrier family 35 member E1 (AHRD V1 **-- B7ZTJ7_XENTR); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00006931g0010.1 protein AED:0.23 eAED:0.23 QI:279|1|1|1|0|0|4|404|84; (*GB) gi|297734949|emb|CBI17183.3| (e_value=5e-29) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g079920.1.1 (e_value=4e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:60699626-60701221 transcript_region:SL2.40ch10:60699626..60701221- functional_description:"Transmembrane protein (AHRD V1 ***- D3BNN2_POLPA)"; NbS00006931g0103.1 protein AED:0.52 eAED:0.55 QI:0|0|0|0.33|1|1|3|0|208 NbS00006931g0102.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|436 NbS00006931g0101.1 protein AED:0.30 eAED:0.31 QI:0|0|0|1|1|1|3|0|265 NbS00006931g0114.1 protein AED:0.37 eAED:0.48 QI:0|0|0|1|0|0.5|2|0|182 NbS00000031g0013.1 protein AED:0.10 eAED:0.11 QI:0|0.71|0.5|1|0.71|0.62|8|0|1169; (*GB) gi|224127598|ref|XP_002329317.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=4e-28) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT1G67230.1 (e_value=0.0) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc03g045050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:15380538-15390086 transcript_region:SL2.40ch03:15380538..15390086+ functional_description:"Nuclear matrix constituent protein 1 (AHRD V1 ***- D2YZU5_APIGR)"; NbS00000031g0012.1 protein AED:0.22 eAED:0.23 QI:20|0.57|0.5|1|0.57|0.62|8|0|523; (*GB) gi|359488397|ref|XP_002279557.2| (e_value=6e-50) PREDICTED: uncharacterized protein LOC100247996 [Vitis vinifera];; (*SWP) sp|Q2QDA8|PSBA_CUCSA (e_value=1e-19) Photosystem Q(B) protein OS=Cucumis sativus GN=psbA PE=3 SV=1;; (*TAIR) AT5G38600.1 (e_value=4e-35) | Symbols: | Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein | chr5:15457386-15460466 FORWARD LENGTH=532;; (*ITAG) Solyc03g045060.2.1 (e_value=1e-127) genomic_reference:SL2.40ch03 gene_region:15401062-15411641 transcript_region:SL2.40ch03:15401062..15411641- go_terms:GO:0008270 functional_description:"Zinc finger CCHC domain-containing protein 8 (AHRD V1 *--- ZCHC8_CHICK); contains Interpro domain(s) IPR006568 PSP, proline-rich "; GO:0008270 NbS00042700g0002.1 protein AED:0.03 eAED:0.03 QI:35|1|0.75|1|0|0|4|0|190; (*GB) gi|224091869|ref|XP_002309380.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-38) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G30420.1 (e_value=6e-64) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:14877069-14878914 FORWARD LENGTH=373;; (*ITAG) Solyc07g006290.1.1 (e_value=3e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1075875-1081383 transcript_region:SL2.40ch07:1075875..1081383- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9M0B8_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00004659g0006.1 protein AED:0.07 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|484; (*GB) gi|224114073|ref|XP_002316659.1| (e_value=2e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|O64788|FBD33_ARATH (e_value=1e-16) FBD-associated F-box protein At1g61320 OS=Arabidopsis thaliana GN=At1g61320 PE=2 SV=1;; (*TAIR) AT1G61320.1 (e_value=8e-18) | Symbols: | FBD / Leucine Rich Repeat domains containing protein | chr1:22617370-22619718 FORWARD LENGTH=459;; (*ITAG) Solyc02g079120.1.1 (e_value=4e-117) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38309723-38311291 transcript_region:SL2.40ch02:38309723..38311291+ functional_description:"F-box family protein (AHRD V1 *-*- D7LD53_ARALY)"; NbS00004659g0007.1 protein AED:0.30 eAED:0.31 QI:0|0.78|0.8|1|0.85|0.86|15|243|457; (*GB) gi|359495466|ref|XP_002277046.2| (e_value=0.0) PREDICTED: telomerase Cajal body protein 1-like [Vitis vinifera];; (*SWP) sp|Q8VC51|WAP53_MOUSE (e_value=2e-86) Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1;; (*TAIR) AT4G21520.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:11447514-11450377 REVERSE LENGTH=425;; (*ITAG) Solyc02g079110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38300297-38306896 transcript_region:SL2.40ch02:38300297..38306896+ go_terms:GO:0034512 functional_description:"WD repeat-containing protein (AHRD V1 **-- C0S8X8_PARBP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0034512 NbS00042889g0008.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|0.66|0.75|4|0|325; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-31) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00042889g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|147811305|emb|CAN76714.1| (e_value=5e-56) hypothetical protein VITISV_018794 [Vitis vinifera];; (*SWP) sp|Q9SJB4|GDL34_ARATH (e_value=9e-53) GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1;; (*TAIR) AT2G04570.1 (e_value=7e-54) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350;; (*ITAG) Solyc07g049430.2.1 (e_value=1e-73) genomic_reference:SL2.40ch07 gene_region:57019991-57022552 transcript_region:SL2.40ch07:57019991..57022552+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g42990 (AHRD V1 ***- GDL48_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00018924g0007.1 protein AED:0.19 eAED:0.24 QI:0|0|0|0.83|0|0.33|6|0|260; (*GB) gi|357489585|ref|XP_003615080.1| (e_value=8e-36) Polygalacturonase [Medicago truncatula];; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=7e-32) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT1G17150.1 (e_value=2e-34) | Symbols: | Pectin lyase-like superfamily protein | chr1:5865707-5867495 FORWARD LENGTH=402;; (*ITAG) Solyc01g009640.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3880652-3883446 transcript_region:SL2.40ch01:3880652..3883446- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- C0JAE6_9ORYZ); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00018924g0102.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|400 NbS00018924g0104.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|72 NbS00018141g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.4|0.8|1|1|5|0|335; (*GB) gi|19698450|gb|AAL93153.1|AF485267_1 (e_value=1e-126) class III peroxidase [Gossypium hirsutum];; (*SWP) sp|Q9SZH2|PER43_ARATH (e_value=7e-118) Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2;; (*TAIR) AT4G25980.1 (e_value=1e-118) | Symbols: | Peroxidase superfamily protein | chr4:13189393-13191507 FORWARD LENGTH=371;; (*ITAG) Solyc04g064690.2.1 (e_value=4e-180) genomic_reference:SL2.40ch04 gene_region:54949154-54952867 transcript_region:SL2.40ch04:54949154..54952867- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q5K4K5_GOSHI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00018141g0001.1 protein AED:0.17 eAED:0.17 QI:1199|0.95|0.95|1|0.61|0.59|22|1276|280; (*GB) gi|359492305|ref|XP_002265283.2| (e_value=2e-149) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=2e-136) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=1e-137) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=6e-173) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00062020g0005.1 protein AED:0.22 eAED:0.28 QI:0|0.77|0.7|1|0.55|0.5|10|0|480; (*GB) gi|225457955|ref|XP_002274931.1| (e_value=7e-179) PREDICTED: uncharacterized protein LOC100241980 [Vitis vinifera];; (*TAIR) AT1G30755.1 (e_value=4e-129) | Symbols: | Protein of unknown function (DUF668) | chr1:10905991-10908773 REVERSE LENGTH=615;; (*ITAG) Solyc04g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63055757-63062387 transcript_region:SL2.40ch04:63055757..63062387+ go_terms:GO:0016020 functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; GO:0016020 NbS00016544g0009.1 protein AED:0.09 eAED:0.09 QI:110|0.8|1|1|1|1|6|286|255; (*GB) gi|15238536|ref|NP_200788.1| (e_value=2e-22) methyl-CPG-binding domain 7 protein [Arabidopsis thaliana];; (*SWP) sp|Q9FJF4|MBD7_ARATH (e_value=5e-24) Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 PE=1 SV=1;; (*TAIR) AT5G59800.1 (e_value=4e-25) | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain 7 | chr5:24094752-24096422 REVERSE LENGTH=306;; (*ITAG) Solyc11g073080.1.1 (e_value=7e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53269357-53272788 transcript_region:SL2.40ch11:53269357..53272788+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9HPK6_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00016544g0010.1 protein AED:0.10 eAED:0.15 QI:50|0|0|1|0|0|2|0|345; (*GB) gi|225435066|ref|XP_002281425.1| (e_value=0.0) PREDICTED: putative nuclease HARBI1 [Vitis vinifera];; (*SWP) sp|B0BN95|HARB1_RAT (e_value=2e-22) Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1;; (*TAIR) AT3G55350.1 (e_value=7e-142) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:20518518-20520690 FORWARD LENGTH=406;; (*ITAG) Solyc11g073090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53273840-53274829 transcript_region:SL2.40ch11:53273840..53274829- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00038703g0007.1 protein AED:0.09 eAED:0.10 QI:1|1|0.91|1|0.45|0.83|12|325|602; (*GB) gi|225428881|ref|XP_002285306.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246943 [Vitis vinifera];; (*SWP) sp|Q8T9S7|PTEN_DICDI (e_value=2e-58) Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN OS=Dictyostelium discoideum GN=pteN PE=2 SV=1;; (*TAIR) AT3G19420.1 (e_value=0.0) | Symbols: ATPEN2, PEN2 | PTEN 2 | chr3:6731824-6735354 FORWARD LENGTH=611;; (*ITAG) Solyc02g093000.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48536255-48540419 transcript_region:SL2.40ch02:48536255..48540419- go_terms:GO:0004722,GO:0004725 functional_description:"Phosphatase and tensin-like A (AHRD V1 **-* C5IX04_APIME); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; GO:0004722,GO:0004725 NbS00038703g0002.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|411; (*GB) gi|30013671|gb|AAP03878.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum];; (*SWP) sp|Q9S9X4|FBL8_ARATH (e_value=5e-156) Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1;; (*TAIR) AT4G07400.1 (e_value=4e-157) | Symbols: VFB3 | VIER F-box proteine 3 | chr4:4197847-4199511 REVERSE LENGTH=554;; (*ITAG) Solyc02g092990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:48531618-48533270 transcript_region:SL2.40ch02:48531618..48533270+ go_terms:GO:0004842 functional_description:"SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00010074g0001.1 protein AED:0.10 eAED:0.10 QI:49|1|1|1|0.42|0.5|8|1274|343; (*GB) gi|225464083|ref|XP_002269250.1| (e_value=2e-47) PREDICTED: KH domain-containing protein At4g18375-like [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=2e-14) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT2G22600.1 (e_value=4e-30) | Symbols: | RNA-binding KH domain-containing protein | chr2:9596617-9599050 FORWARD LENGTH=632;; (*ITAG) Solyc11g010840.1.1 (e_value=7e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3855377-3861908 transcript_region:SL2.40ch11:3855377..3861908+ go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 3 (AHRD V1 *--- Q5MJP6_HUMAN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00010074g0011.1 protein AED:0.17 eAED:0.46 QI:0|0|0|1|1|1|2|0|81 NbS00010074g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|468; (*GB) gi|20149064|gb|AAM12787.1| (e_value=0.0) putative anthocyanidine rhamnosyl-transferase [Capsicum annuum];; (*SWP) sp|Q940V3|U91A1_ARATH (e_value=2e-172) UDP-glycosyltransferase 91A1 OS=Arabidopsis thaliana GN=UGT91A1 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=1e-173) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc00g227860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:19558891-19560303 transcript_region:SL2.40ch00:19558891..19560303- go_terms:GO:0008152,GO:0055114 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- B3VI56_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152,GO:0055114 NbS00010074g0018.1 protein AED:0.11 eAED:0.11 QI:0|0.18|0.08|0.91|0.27|0.16|12|0|635; (*GB) gi|256619606|emb|CAZ66649.1| (e_value=0.0) 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor [Solanum lycopersicum];; (*SWP) sp|Q6YU51|DXS2_ORYSJ (e_value=0.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1;; (*TAIR) AT4G15560.1 (e_value=0.0) | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717;; (*ITAG) Solyc11g010850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3870455-3875051 transcript_region:SL2.40ch11:3870455..3875051- go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 2 (AHRD V1 **** C7U111_SOLLC); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00007131g0009.1 protein AED:0.15 eAED:0.15 QI:157|1|1|1|0.91|1|13|421|363; (*GB) gi|356564065|ref|XP_003550277.1| (e_value=0.0) PREDICTED: histone deacetylase 2-like [Glycine max];; (*SWP) sp|Q944K3|HDA2_ARATH (e_value=0.0) Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=1 SV=2;; (*TAIR) AT5G26040.2 (e_value=0.0) | Symbols: HDA2 | histone deacetylase 2 | chr5:9099321-9101598 REVERSE LENGTH=387;; (*ITAG) Solyc08g065350.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50469218-50477686 transcript_region:SL2.40ch08:50469218..50477686+ go_terms:GO:0008134,GO:0004407 functional_description:"Histone deacetylase 11 (AHRD V1 **** B6T7F6_MAIZE); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0008134,GO:0004407 NbS00007131g0006.1 protein AED:0.29 eAED:0.29 QI:0|0.89|0.8|1|0.78|0.9|20|368|663; (*GB) gi|225444959|ref|XP_002282458.1| (e_value=0.0) PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera];; (*SWP) sp|B5X0N6|KEA6_ARATH (e_value=0.0) K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1;; (*TAIR) AT5G11800.1 (e_value=0.0) | Symbols: KEA6, ATKEA6 | K+ efflux antiporter 6 | chr5:3803635-3808069 REVERSE LENGTH=597;; (*ITAG) Solyc08g065360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:50488254-50508388 transcript_region:SL2.40ch08:50488254..50508388+ go_terms:GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q8TJ09_METAC); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00052331g0005.1 protein AED:0.22 eAED:0.22 QI:0|0.66|0.75|1|0.66|0.75|4|169|245; (*GB) gi|224142339|ref|XP_002324516.1| (e_value=1e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|Q12288|YL126_YEAST (e_value=9e-13) Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1;; (*TAIR) AT4G30550.1 (e_value=2e-78) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr4:14925618-14926713 FORWARD LENGTH=249;; (*ITAG) Solyc07g006090.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:942872-945412 transcript_region:SL2.40ch07:942872..945412+ go_terms:GO:0003824 functional_description:"GMP synthase (AHRD V1 ***- B9SQW3_RICCO); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0003824 NbC24745293g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|20149046|gb|AAM12778.1| (e_value=7e-43) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=2e-30) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=3e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110940.2.1 (e_value=7e-44) genomic_reference:SL2.40ch01 gene_region:89164789-89165620 transcript_region:SL2.40ch01:89164789..89165620+ go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00033956g0004.1 protein AED:0.09 eAED:0.09 QI:185|1|1|1|0.8|1|6|447|226; (*GB) gi|118489708|gb|ABK96655.1| (e_value=3e-107) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|Q9LVV5|TL15B_ARATH (e_value=2e-98) Thylakoid lumenal 15.0 kDa protein 2, chloroplastic OS=Arabidopsis thaliana GN=At5g52970 PE=1 SV=2;; (*TAIR) AT5G52970.1 (e_value=2e-99) | Symbols: | thylakoid lumen 15.0 kDa protein | chr5:21479620-21481018 FORWARD LENGTH=223;; (*ITAG) Solyc10g084040.1.1 (e_value=5e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63037355-63040112 transcript_region:SL2.40ch10:63037355..63040112- functional_description:"Thylakoid lumen 15.0-kDa protein (Fragment) (AHRD V1 **-- B8C1L2_THAPS)"; NbS00033956g0002.1 protein AED:0.13 eAED:0.33 QI:0|0|0|1|1|1|2|0|103 NbS00061073g0003.1 protein AED:0.23 eAED:0.23 QI:109|1|1|1|0.5|0.4|5|618|308; (*GB) gi|359492238|ref|XP_002279957.2| (e_value=4e-56) PREDICTED: uncharacterized protein LOC100259217 [Vitis vinifera];; (*TAIR) AT1G19980.1 (e_value=2e-34) | Symbols: | cytomatrix protein-related | chr1:6933162-6934643 FORWARD LENGTH=342;; (*ITAG) Solyc04g081450.2.1 (e_value=2e-108) genomic_reference:SL2.40ch04 gene_region:63015725-63019060 transcript_region:SL2.40ch04:63015725..63019060+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028827g0002.1 protein AED:0.27 eAED:0.29 QI:120|1|0.5|1|0|0|2|0|414; (*GB) gi|15418710|gb|AAG31014.1| (e_value=1e-110) tospovirus resistance protein B [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=3e-87) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=4e-63) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc06g064760.1.1 (e_value=3e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36753875-36756163 transcript_region:SL2.40ch06:36753875..36756163+ go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00028827g0003.1 protein AED:0.36 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|15418714|gb|AAG31017.1| (e_value=1e-20) tospovirus resistance protein E [Solanum lycopersicum];; (*ITAG) Solyc05g009740.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3947234-3949477 transcript_region:SL2.40ch05:3947234..3949477- go_terms:GO:0006952,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00050202g0003.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|2|0|81; (*ITAG) Solyc07g062880.2.1 (e_value=4e-17) genomic_reference:SL2.40ch07 gene_region:62736818-62741384 transcript_region:SL2.40ch07:62736818..62741384+ go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00018850g0001.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|1|1|2|0|192; (*GB) gi|297813919|ref|XP_002874843.1| (e_value=3e-31) hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9S9V9|FBL23_ARATH (e_value=9e-29) Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1;; (*TAIR) AT4G05460.1 (e_value=3e-27) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g006920.1.1 (e_value=2e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1492121-1494699 transcript_region:SL2.40ch08:1492121..1494699- go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 4 (AHRD V1 ***- FBL4_ARATH); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; GO:0005515,GO:0004842 NbS00019655g0004.1 protein AED:0.07 eAED:0.14 QI:0|0|0|0.66|0.5|0.33|3|0|958; (*GB) gi|356539781|ref|XP_003538372.1| (e_value=7e-13) PREDICTED: FACT complex subunit SPT16-like isoform 1 [Glycine max];; (*ITAG) Solyc02g081590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40060928-40063885 transcript_region:SL2.40ch02:40060928..40063885+ functional_description:"FACT complex subunit SPT16 (AHRD V1 *-*- SPT16_ARATH)"; NbS00007305g0005.1 protein AED:0.43 eAED:0.45 QI:17|1|0.66|1|0|0.33|3|3|119; (*GB) gi|359481485|ref|XP_003632627.1| (e_value=1e-83) PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Vitis vinifera];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=7e-84) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.5 (e_value=2e-85) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=190;; (*ITAG) Solyc10g011740.2.1 (e_value=8e-86) genomic_reference:SL2.40ch10 gene_region:3983198-3987001 transcript_region:SL2.40ch10:3983198..3987001- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 8 (AHRD V1 **** UBC8_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00007525g0107.1 protein AED:0.05 eAED:0.16 QI:66|0.33|0.25|0.75|0.33|0.75|4|0|1114 NbS00056590g0003.1 protein AED:0.01 eAED:0.01 QI:285|1|1|1|1|1|3|348|305; (*GB) gi|225446835|ref|XP_002283603.1| (e_value=9e-74) PREDICTED: probable WRKY transcription factor 28 [Vitis vinifera];; (*SWP) sp|Q8VWJ2|WRK28_ARATH (e_value=2e-45) Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1;; (*TAIR) AT4G18170.1 (e_value=1e-46) | Symbols: WRKY28, ATWRKY28 | WRKY DNA-binding protein 28 | chr4:10061508-10062691 FORWARD LENGTH=318;; (*ITAG) Solyc07g056280.2.1 (e_value=6e-91) genomic_reference:SL2.40ch07 gene_region:61460392-61463054 transcript_region:SL2.40ch07:61460392..61463054+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 16 (AHRD V1 *-*- Q7X7E3_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010384g0009.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0.44|1|1|1|9|154|547; (*GB) gi|356518667|ref|XP_003528000.1| (e_value=1e-72) PREDICTED: two-component response regulator-like PRR95-like [Glycine max];; (*SWP) sp|Q6LA42|APRR5_ARATH (e_value=2e-71) Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2;; (*TAIR) AT5G24470.1 (e_value=8e-71) | Symbols: APRR5, PRR5 | pseudo-response regulator 5 | chr5:8356204-8358873 REVERSE LENGTH=667;; (*ITAG) Solyc10g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:41126-47459 transcript_region:SL2.40ch10:41126..47459+ go_terms:GO:0006355 functional_description:"Pseudo-response regulator 9 (AHRD V1 ***- D0PPG9_CASSA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00010384g0010.1 protein AED:0.24 eAED:0.49 QI:0|0|0|1|0|0.25|4|0|273; (*GB) gi|113205244|gb|AAT39318.2| (e_value=8e-19) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g059760.1.1 (e_value=2e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010384g0003.1 protein AED:0.93 eAED:0.93 QI:0|0|0|0.33|1|1|3|0|210 NbS00010384g0101.1 protein AED:0.08 eAED:0.09 QI:553|0.5|0.66|1|0|0.33|3|0|81 NbS00010384g0211.1 protein AED:0.18 eAED:0.18 QI:218|1|1|1|0.83|0.71|7|646|182 NbS00010384g0214.1 protein AED:0.16 eAED:0.16 QI:271|0.5|0.6|1|0.75|1|5|0|401 NbS00035448g0004.1 protein AED:0.28 eAED:0.38 QI:0|0.12|0.11|0.88|0.12|0|9|229|312; (*GB) gi|225445780|ref|XP_002275081.1| (e_value=1e-119) PREDICTED: serine carboxypeptidase II-2 [Vitis vinifera];; (*SWP) sp|P55748|CBP22_HORVU (e_value=3e-113) Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1;; (*TAIR) AT4G30810.1 (e_value=2e-111) | Symbols: scpl29 | serine carboxypeptidase-like 29 | chr4:15003474-15006017 FORWARD LENGTH=479;; (*ITAG) Solyc07g005960.2.1 (e_value=3e-149) genomic_reference:SL2.40ch07 gene_region:793300-799520 transcript_region:SL2.40ch07:793300..799520- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TM29_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00016376g0002.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.25|1|1|4|0|116 NbS00016376g0003.1 protein AED:0.46 eAED:0.49 QI:72|0|0|0.66|1|1|3|0|64; (*ITAG) Solyc03g044840.1.1 (e_value=4e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00053855g0010.1 protein AED:0.01 eAED:0.04 QI:0|0.33|0.25|1|0|0.25|4|164|863; (*GB) gi|225432500|ref|XP_002279739.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256318 [Vitis vinifera];; (*TAIR) AT5G18980.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:6334944-6337943 REVERSE LENGTH=835;; (*ITAG) Solyc01g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72003994-72006816 transcript_region:SL2.40ch01:72003994..72006816+ go_terms:GO:0005488 functional_description:"At4g14280-like protein (Fragment) (AHRD V1 *-*- C7FD87_ARALP); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00011926g0006.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0.5|2|0|443; (*GB) gi|225440264|ref|XP_002278800.1| (e_value=3e-133) PREDICTED: uncharacterized protein LOC100243149 [Vitis vinifera];; (*TAIR) AT5G45790.2 (e_value=8e-128) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:18572345-18573664 FORWARD LENGTH=439;; (*ITAG) Solyc10g077100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59313554-59314930 transcript_region:SL2.40ch10:59313554..59314930+ go_terms:GO:0005622 functional_description:"Os12g0130100 protein (Fragment) (AHRD V1 *-*- Q0IQC7_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00011926g0109.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|0.66|0.75|4|168|507 NbS00011926g0107.1 protein AED:0.12 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|213 NbS00029095g0014.1 protein AED:0.07 eAED:0.07 QI:0|1|0.94|1|1|1|18|0|1093; (*GB) gi|359478571|ref|XP_002279903.2| (e_value=0.0) PREDICTED: helicase SKI2W-like [Vitis vinifera];; (*SWP) sp|Q15477|SKIV2_HUMAN (e_value=0.0) Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3;; (*TAIR) AT3G46960.1 (e_value=0.0) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17291004-17298067 REVERSE LENGTH=1347;; (*ITAG) Solyc06g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:983484-1006865 transcript_region:SL2.40ch06:983484..1006865+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B3LQ61_YEAS1); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00029095g0013.1 protein AED:0.00 eAED:0.00 QI:827|1|1|1|0.5|0.66|3|232|252; (*GB) gi|357505321|ref|XP_003622949.1| (e_value=8e-44) hypothetical protein MTR_7g058710 [Medicago truncatula];; (*TAIR) AT5G01150.1 (e_value=3e-36) | Symbols: | Protein of unknown function (DUF674) | chr5:51988-53649 FORWARD LENGTH=501;; (*ITAG) Solyc06g005900.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:892513-896727 transcript_region:SL2.40ch06:892513..896727- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00029095g0015.1 protein AED:0.26 eAED:0.36 QI:0|0|0|1|0.5|0.66|3|0|137; (*GB) gi|225434704|ref|XP_002280988.1| (e_value=4e-30) PREDICTED: uncharacterized protein LOC100258718 [Vitis vinifera];; (*ITAG) Solyc06g006000.2.1 (e_value=2e-40) genomic_reference:SL2.40ch06 gene_region:1007187-1010255 transcript_region:SL2.40ch06:1007187..1010255- functional_description:"Unknown Protein (AHRD V1)"; NbS00028299g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|181; (*GB) gi|377657605|gb|AFB74236.1| (e_value=7e-70) photosystem I p700 apoprotein A1, partial (chloroplast) [Anredera baselloides];; (*SWP) sp|Q27S50|PSAA_SOLTU (e_value=3e-71) Photosystem I P700 chlorophyll a apoprotein A1 OS=Solanum tuberosum GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=1e-71) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=9e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00028299g0004.1 protein AED:0.13 eAED:0.27 QI:0|0|0|1|1|1|2|0|84; (*ITAG) Solyc03g063790.1.1 (e_value=5e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:33526476-33526877 transcript_region:SL2.40ch03:33526476..33526877- functional_description:"Unknown Protein (AHRD V1)"; NbS00028299g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055951g0003.1 protein AED:0.14 eAED:0.14 QI:4|0.8|0.90|1|1|1|11|253|416; (*GB) gi|157042747|gb|ABV02025.1| (e_value=0.0) HMG-CoA synthase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P54873|HMCS_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=0.0) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc12g056450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47749001-47752891 transcript_region:SL2.40ch12:47749001..47752891+ go_terms:GO:0008152,GO:0008299 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 ***- A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic "; GO:0008152,GO:0008299 NbC25593242g0002.1 protein AED:0.11 eAED:0.11 QI:85|0|0|1|0|0|2|0|17 NbS00006629g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|258; (*ITAG) Solyc10g009230.1.1 (e_value=8e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:3226081-3226629 transcript_region:SL2.40ch10:3226081..3226629- functional_description:"Unknown Protein (AHRD V1)"; NbS00006629g0009.1 protein AED:0.30 eAED:0.31 QI:18|0.66|0.57|1|0.66|0.57|7|267|456; (*GB) gi|356573261|ref|XP_003554781.1| (e_value=2e-142) PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like [Glycine max];; (*SWP) sp|Q4P8R9|PABP_USTMA (e_value=8e-20) Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1;; (*TAIR) AT4G00830.2 (e_value=8e-128) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495;; (*ITAG) Solyc10g009220.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3215593-3225768 transcript_region:SL2.40ch10:3215593..3225768+ go_terms:GO:0017091 functional_description:"Polyadenylate-binding protein 4-like (AHRD V1 *--* PAB4L_HUMAN); contains Interpro domain(s) IPR003954 RNA recognition, region 1 "; GO:0017091 NbS00014327g0011.1 protein AED:0.15 eAED:0.20 QI:0|1|0.8|1|1|1|5|52|657; (*GB) gi|224137174|ref|XP_002327055.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O22161|ADLO1_ARATH (e_value=0.0) Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1;; (*TAIR) AT2G44900.1 (e_value=0.0) | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 | chr2:18511719-18515762 REVERSE LENGTH=930;; (*ITAG) Solyc01g090420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75851153-75866838 transcript_region:SL2.40ch01:75851153..75866838- go_terms:GO:0005515,GO:0004842 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LBT5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00014327g0008.1 protein AED:0.34 eAED:0.34 QI:1116|0.66|0.5|1|1|1|4|0|167; (*GB) gi|255541074|ref|XP_002511601.1| (e_value=1e-48) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|O22161|ADLO1_ARATH (e_value=6e-46) Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1;; (*TAIR) AT2G44900.1 (e_value=5e-47) | Symbols: ARABIDILLO-1, ARABIDILLO1 | ARABIDILLO-1 | chr2:18511719-18515762 REVERSE LENGTH=930;; (*ITAG) Solyc01g090420.2.1 (e_value=9e-61) genomic_reference:SL2.40ch01 gene_region:75851153-75866838 transcript_region:SL2.40ch01:75851153..75866838- go_terms:GO:0005515,GO:0004842 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7LBT5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00014327g0007.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|348; (*GB) gi|225453406|ref|XP_002271824.1| (e_value=2e-142) PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Vitis vinifera];; (*SWP) sp|Q1PEU4|PP201_ARATH (e_value=1e-119) Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2;; (*TAIR) AT2G44880.1 (e_value=7e-121) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:18505239-18506906 FORWARD LENGTH=555;; (*ITAG) Solyc01g090390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:75844142-75845929 transcript_region:SL2.40ch01:75844142..75845929+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LBT2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014327g0013.1 protein AED:0.17 eAED:0.17 QI:501|0.8|0.81|1|0.9|0.90|11|304|258; (*GB) gi|40846454|gb|AAR92492.1| (e_value=3e-93) putative palmitoyl-protein thioesterase [Tropaeolum majus];; (*SWP) sp|O88531|PPT1_MOUSE (e_value=3e-19) Palmitoyl-protein thioesterase 1 OS=Mus musculus GN=Ppt1 PE=2 SV=2;; (*TAIR) AT3G60340.2 (e_value=3e-90) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22304395-22306389 FORWARD LENGTH=338;; (*ITAG) Solyc01g090410.2.1 (e_value=6e-115) genomic_reference:SL2.40ch01 gene_region:75848647-75851160 transcript_region:SL2.40ch01:75848647..75851160+ go_terms:GO:0008474 functional_description:"Palmitoyl protein thioesterase family protein (AHRD V1 **** D7LRP2_ARALY); contains Interpro domain(s) IPR002472 Palmitoyl protein thioesterase "; GO:0008474 NbS00014327g0018.1 protein AED:0.22 eAED:0.22 QI:14|1|1|1|0.5|0.4|5|105|171; (*GB) gi|255567963|ref|XP_002524959.1| (e_value=2e-43) calcium ion binding protein, putative [Ricinus communis];; (*TAIR) AT4G37445.1 (e_value=2e-40) | Symbols: | BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17604144-17604918 REVERSE LENGTH=161;; (*ITAG) Solyc01g090400.2.1 (e_value=9e-62) genomic_reference:SL2.40ch01 gene_region:75846513-75847640 transcript_region:SL2.40ch01:75846513..75847640+ functional_description:"EF hand family protein (AHRD V1 ***- B6T381_MAIZE)"; NbS00041228g0005.1 protein AED:0.25 eAED:0.32 QI:0|1|0.75|1|0.85|0.87|8|0|271; (*GB) gi|224125100|ref|XP_002319500.1| (e_value=2e-133) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05625.1 (e_value=2e-122) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1632408-1633912 FORWARD LENGTH=257;; (*ITAG) Solyc10g044710.1.1 (e_value=6e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:22992778-22995517 transcript_region:SL2.40ch10:22992778..22995517- go_terms:GO:0005975,GO:0005488 functional_description:"TPR repeat (AHRD V1 ***- Q2HW44_MEDTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005975,GO:0005488 NbS00059994g0003.1 protein AED:0.07 eAED:0.08 QI:0|0.6|0.66|1|0.6|0.5|6|0|378; (*GB) gi|225453303|ref|XP_002268524.1| (e_value=0.0) PREDICTED: metacaspase-1-like [Vitis vinifera];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=0.0) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=0.0) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g088710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75229978-75236379 transcript_region:SL2.40ch01:75229978..75236379- go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00048887g0003.1 protein AED:0.38 eAED:0.40 QI:0|0|0|1|0|0|3|0|180 NbS00048887g0002.1 protein AED:0.32 eAED:0.84 QI:0|0|0|1|0|0|4|0|165 NbS00005089g0003.1 protein AED:0.01 eAED:0.03 QI:0|0.8|0.66|1|1|1|6|0|797; (*GB) gi|27528486|emb|CAC84597.2| (e_value=3e-159) VP1-ABI3-like protein [Solanum tuberosum];; (*SWP) sp|Q01593|ABI3_ARATH (e_value=5e-120) B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1;; (*TAIR) AT3G24650.1 (e_value=4e-121) | Symbols: ABI3, SIS10 | AP2/B3-like transcriptional factor family protein | chr3:8997911-9000780 FORWARD LENGTH=720;; (*ITAG) Solyc06g083600.1.1 (e_value=2e-170) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45247406-45250350 transcript_region:SL2.40ch06:45247406..45250350+ go_terms:GO:0016563,GO:0003700 functional_description:"B3 domain-containing transcription factor ABI3 (AHRD V1 **-* ABI3_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0016563,GO:0003700 NbS00005089g0102.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|128 NbS00005089g0111.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|101 NbS00009249g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|76 NbS00024279g0007.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|540; (*GB) gi|224134082|ref|XP_002327751.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G66200.1 (e_value=0.0) | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453648-26455603 REVERSE LENGTH=651;; (*ITAG) Solyc02g083820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00024279g0003.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|224134082|ref|XP_002327751.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*TAIR) AT4G34940.1 (e_value=8e-61) | Symbols: ARO1 | armadillo repeat only 1 | chr4:16639760-16641754 FORWARD LENGTH=664;; (*ITAG) Solyc02g083820.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00024279g0005.1 protein AED:0.36 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|106; (*GB) gi|1184991|gb|AAA87887.1| (e_value=1e-34) NTGB3, partial [Nicotiana tabacum];; (*SWP) sp|P52884|SAR2_SOLLC (e_value=1e-34) GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=3e-34) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc01g060130.2.1 (e_value=9e-36) genomic_reference:SL2.40ch01 gene_region:62492587-62494651 transcript_region:SL2.40ch01:62492587..62494651+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0005525,GO:0005622 NbS00003615g0013.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|189; (*GB) gi|357462271|ref|XP_003601417.1| (e_value=1e-131) Vacuolar protein sorting [Medicago truncatula];; (*SWP) sp|Q9STT2|VPS29_ARATH (e_value=4e-124) Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1;; (*TAIR) AT3G47810.3 (e_value=3e-125) | Symbols: MAG1 | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:17637256-17639017 REVERSE LENGTH=190;; (*ITAG) Solyc03g113020.2.1 (e_value=2e-139) genomic_reference:SL2.40ch03 gene_region:57374726-57378948 transcript_region:SL2.40ch03:57374726..57378948+ go_terms:GO:0008565,GO:0042802 functional_description:"Vacuolar protein sorting 29 (AHRD V1 ***- B6SUM0_MAIZE); contains Interpro domain(s) IPR000979 Uncharacterised protein family UPF0025 "; GO:0008565,GO:0042802 NbS00003615g0014.1 protein AED:0.09 eAED:0.09 QI:238|1|1|1|1|1|5|303|353; (*GB) gi|225456717|ref|XP_002268039.1| (e_value=1e-178) PREDICTED: aldose 1-epimerase [Vitis vinifera];; (*SWP) sp|Q8K157|GALM_MOUSE (e_value=3e-88) Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1;; (*TAIR) AT3G47800.1 (e_value=9e-171) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:17634971-17636998 FORWARD LENGTH=358;; (*ITAG) Solyc03g113030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57379233-57381467 transcript_region:SL2.40ch03:57379233..57381467- go_terms:GO:0005975,GO:0019318 functional_description:"Aldose 1-epimerase-like protein (AHRD V1 ***- Q8LFH1_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005975,GO:0019318 NbS00003615g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.81|0.66|0.91|0.81|0.83|12|0|620; (*GB) gi|225456715|ref|XP_002274303.1| (e_value=0.0) PREDICTED: ABC transporter A family member 7 [Vitis vinifera];; (*SWP) sp|Q9STT5|AB7A_ARATH (e_value=0.0) ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2;; (*TAIR) AT3G47780.1 (e_value=0.0) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935;; (*ITAG) Solyc03g113060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57405362-57413188 transcript_region:SL2.40ch03:57405362..57413188- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RFW2_SELML); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00060663g0003.1 protein AED:0.20 eAED:0.22 QI:0|0|0|1|0|0.5|2|0|267; (*GB) gi|359488708|ref|XP_002274748.2| (e_value=2e-108) PREDICTED: UDP-glycosyltransferase 90A1-like [Vitis vinifera];; (*SWP) sp|Q9ZVX4|U90A1_ARATH (e_value=1e-83) UDP-glycosyltransferase 90A1 OS=Arabidopsis thaliana GN=UGT90A1 PE=2 SV=1;; (*TAIR) AT5G14860.1 (e_value=9e-89) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4805887-4807759 FORWARD LENGTH=492;; (*ITAG) Solyc03g114180.2.1 (e_value=1e-144) genomic_reference:SL2.40ch03 gene_region:58239856-58242968 transcript_region:SL2.40ch03:58239856..58242968- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 ***- D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00011733g0005.1 protein AED:0.41 eAED:0.41 QI:134|0.71|0.75|1|0.42|0.62|8|825|166; (*GB) gi|3024440|sp|P93395.1|PSB6_TOBAC (e_value=3e-74) RecName: Full=Proteasome subunit beta type-6; AltName: Full=Proteasome delta chain; AltName: Full=Tobacco cryptogein-induced protein 7; Short=tcI 7; Flags: Precursor;; (*SWP) sp|P93395|PSB6_TOBAC (e_value=9e-76) Proteasome subunit beta type-6 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G31300.3 (e_value=1e-74) | Symbols: PBA1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr4:15188927-15190935 FORWARD LENGTH=233;; (*ITAG) Solyc07g016200.2.1 (e_value=2e-82) genomic_reference:SL2.40ch07 gene_region:6442412-6451485 transcript_region:SL2.40ch07:6442412..6451485- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9SPS6_RICCO); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005839 NbS00012634g0006.1 protein AED:0.37 eAED:0.39 QI:0|0.53|0.68|0.93|0.86|0.87|16|383|529; (*GB) gi|12231951|gb|AAG49320.1|AF316320_1 (e_value=0.0) JD1 [Nicotiana tabacum];; (*SWP) sp|Q8BYI6|PCAT2_MOUSE (e_value=4e-19) Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus GN=Lpcat2 PE=1 SV=1;; (*TAIR) AT2G45670.1 (e_value=0.0) | Symbols: | calcineurin B subunit-related | chr2:18815070-18818382 REVERSE LENGTH=539;; (*ITAG) Solyc01g091950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77242437-77253671 transcript_region:SL2.40ch01:77242437..77253671+ go_terms:GO:0047184 functional_description:"1-acylglycerophosphocholine O-acyltransferase 1 (AHRD V1 **** PCAT1_DROME); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0047184 NbS00044915g0003.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|1|1|8|0|606; (*GB) gi|33337947|gb|AAQ13595.1| (e_value=0.0) putative squalene epoxidase [Solanum lycopersicum];; (*SWP) sp|O48651|ERG1_PANGI (e_value=0.0) Squalene monooxygenase OS=Panax ginseng PE=2 SV=1;; (*TAIR) AT4G37760.1 (e_value=0.0) | Symbols: SQE3 | squalene epoxidase 3 | chr4:17744085-17746426 FORWARD LENGTH=525;; (*ITAG) Solyc00g085070.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:15174912-15178624 transcript_region:SL2.40ch00:15174912..15178624- go_terms:GO:0005515,GO:0008144 functional_description:"Squalene monooxygenase (AHRD V1 ***- Q506K3_DATIN); contains Interpro domain(s) IPR013698 Squalene epoxidase "; GO:0005515,GO:0008144 NbS00023548g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.6|1|0.5|0.6|5|0|215; (*GB) gi|225448536|ref|XP_002276751.1| (e_value=5e-129) PREDICTED: eukaryotic translation initiation factor 2 subunit alpha [Vitis vinifera];; (*SWP) sp|P56286|IF2A_SCHPO (e_value=2e-66) Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif211 PE=1 SV=1;; (*TAIR) AT2G40290.1 (e_value=8e-124) | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344;; (*ITAG) Solyc03g095840.2.1 (e_value=3e-139) genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit "; GO:0005515,GO:0003743 NbS00014421g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.25|1|0.33|0.75|4|0|432; (*GB) gi|356555783|ref|XP_003546209.1| (e_value=0.0) PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Glycine max];; (*SWP) sp|Q8R3G1|PP1R8_MOUSE (e_value=4e-22) Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1;; (*TAIR) AT5G47790.1 (e_value=4e-155) | Symbols: | SMAD/FHA domain-containing protein | chr5:19351396-19352579 FORWARD LENGTH=369;; (*ITAG) Solyc04g015170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5350550-5353424 transcript_region:SL2.40ch04:5350550..5353424+ functional_description:"Nuclear inhibitor of protein phosphatase 1 (AHRD V1 *--- Q9V7W9_DROME); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00014421g0010.1 protein AED:0.28 eAED:0.28 QI:85|0.75|0.77|0.88|0.62|0.77|9|0|191; (*GB) gi|225468957|ref|XP_002274855.1| (e_value=5e-57) PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis vinifera];; (*TAIR) AT4G15950.1 (e_value=2e-31) | Symbols: NRPD4, NRPE4, RDM2 | RNA polymerase II, Rpb4, core protein | chr4:9040743-9041994 FORWARD LENGTH=205;; (*ITAG) Solyc04g015180.2.1 (e_value=4e-35) genomic_reference:SL2.40ch04 gene_region:5368904-5370718 transcript_region:SL2.40ch04:5368904..5370718+ go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II polypeptide (AHRD V1 **-* B6SLK8_MAIZE)"; GO:0003899 NbS00008099g0006.1 protein AED:0.18 eAED:0.23 QI:421|0.5|0.8|1|0.5|0.4|5|292|128 NbS00008099g0005.1 protein AED:0.10 eAED:0.10 QI:719|0.75|0.77|1|0.62|0.55|9|394|232; (*GB) gi|297740287|emb|CBI30469.3| (e_value=7e-138) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=9e-105) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G02010.1 (e_value=1e-140) | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide exchange factor 7 | chr5:383493-385698 FORWARD LENGTH=546;; (*ITAG) Solyc09g011480.2.1 (e_value=4e-162) genomic_reference:SL2.40ch09 gene_region:4799061-4802508 transcript_region:SL2.40ch09:4799061..4802508- go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00008099g0105.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|2|106|223 NbS00008099g0224.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.66|3|224|321 NbS00008099g0221.1 protein AED:0.03 eAED:0.03 QI:58|1|1|1|1|1|2|103|223 NbS00008099g0222.1 protein AED:0.03 eAED:0.03 QI:55|1|1|1|1|1|2|32|223 NbS00008099g0223.1 protein AED:0.04 eAED:0.04 QI:163|1|1|1|1|1|2|380|223 NbC25747906g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|0.5|2|43|74; (*GB) gi|255567305|ref|XP_002524633.1| (e_value=2e-22) Cyclic nucleotide-gated ion channel, putative [Ricinus communis];; (*SWP) sp|Q9LD37|CNG20_ARATH (e_value=3e-15) Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1;; (*TAIR) AT3G17700.1 (e_value=3e-16) | Symbols: CNBT1, CNGC20, ATCNGC20 | cyclic nucleotide-binding transporter 1 | chr3:6049074-6052449 FORWARD LENGTH=764;; (*ITAG) Solyc03g098210.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:54006686-54020551 transcript_region:SL2.40ch03:54006686..54020551- go_terms:GO:0004497,GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like "; GO:0004497,GO:0030551 NbS00022799g0001.1 protein AED:0.21 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|81; (*GB) gi|730536|sp|Q07760.1|RL23_TOBAC (e_value=7e-45) RecName: Full=60S ribosomal protein L23;; (*SWP) sp|Q07760|RL23_TOBAC (e_value=2e-46) 60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1;; (*TAIR) AT3G04400.1 (e_value=2e-46) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140;; (*ITAG) Solyc09g090610.2.1 (e_value=3e-47) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00022799g0003.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.33|1|1|3|0|81; (*GB) gi|224065549|ref|XP_002301852.1| (e_value=5e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|P49690|RL23_ARATH (e_value=4e-53) 60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3;; (*TAIR) AT3G04400.2 (e_value=3e-54) | Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167611-1168308 FORWARD LENGTH=125;; (*ITAG) Solyc09g090610.2.1 (e_value=1e-54) genomic_reference:SL2.40ch09 gene_region:65421245-65423825 transcript_region:SL2.40ch09:65421245..65423825- go_terms:GO:0005840 functional_description:"50S ribosomal protein L14 (AHRD V1 ***- RL14_DEHE1); contains Interpro domain(s) IPR000218 Ribosomal protein L14b/L23e "; GO:0005840 NbS00008823g0003.1 protein AED:0.47 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|330318574|gb|AEC10957.1| (e_value=1e-23) ribosomal petrp-like protein [Camellia sinensis];; (*SWP) sp|O48557|RL17_MAIZE (e_value=3e-23) 60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1;; (*TAIR) AT1G67430.1 (e_value=7e-23) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:25262209-25263627 FORWARD LENGTH=175;; (*ITAG) Solyc06g071870.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00049378g0003.1 protein AED:0.04 eAED:0.05 QI:0|1|0.66|1|1|1|3|193|225; (*GB) gi|225446851|ref|XP_002283721.1| (e_value=6e-59) PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=3e-25) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT2G30933.1 (e_value=4e-51) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr2:13164179-13166517 REVERSE LENGTH=227;; (*ITAG) Solyc07g056310.2.1 (e_value=1e-96) genomic_reference:SL2.40ch07 gene_region:61480093-61482416 transcript_region:SL2.40ch07:61480093..61482416+ functional_description:"Glucan endo-1 3-beta-glucosidase 4 (AHRD V1 *-*- B6T2U4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00038515g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|118486110|gb|ABK94898.1| (e_value=4e-78) unknown [Populus trichocarpa];; (*TAIR) AT2G31160.1 (e_value=3e-77) | Symbols: LSH3 | Protein of unknown function (DUF640) | chr2:13277903-13278562 FORWARD LENGTH=219;; (*ITAG) Solyc06g083860.2.1 (e_value=4e-79) genomic_reference:SL2.40ch06 gene_region:45448018-45450744 transcript_region:SL2.40ch06:45448018..45450744- functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 *-*- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00038515g0007.1 protein AED:0.28 eAED:0.42 QI:0|0|0|0.66|0.5|0.33|3|0|190 NbS00014995g0007.1 protein AED:0.24 eAED:0.28 QI:0|0.76|0.71|1|0.61|0.78|14|0|737; (*GB) gi|225447178|ref|XP_002276594.1| (e_value=0.0) PREDICTED: centromere/kinetochore protein zw10 homolog [Vitis vinifera];; (*SWP) sp|O48626|ZW10_ARATH (e_value=0.0) Centromere/kinetochore protein zw10 homolog OS=Arabidopsis thaliana GN=ZW10 PE=2 SV=1;; (*TAIR) AT2G32900.1 (e_value=0.0) | Symbols: ATZW10 | centromere/kinetochore protein, putative (ZW10) | chr2:13953807-13957470 FORWARD LENGTH=742;; (*ITAG) Solyc05g043350.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:55156215-55171263 transcript_region:SL2.40ch05:55156215..55171263+ go_terms:GO:0005634 functional_description:"Centromere/kinetochore protein zw10 homolog (AHRD V1 ***- ZW10_ARATH); contains Interpro domain(s) IPR009361 Centromere/kinetochore protein Zw10 "; GO:0005634 NbS00014995g0006.1 protein AED:0.02 eAED:0.02 QI:342|1|1|1|1|1|2|219|494; (*GB) gi|388827897|gb|AFK79031.1| (e_value=0.0) cytochrome P450 CYP736A54 [Bupleurum chinense];; (*SWP) sp|P24465|C71A1_PERAE (e_value=4e-114) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT4G36220.1 (e_value=1e-109) | Symbols: FAH1, CYP84A1 | ferulic acid 5-hydroxylase 1 | chr4:17137584-17139619 REVERSE LENGTH=520;; (*ITAG) Solyc04g054250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51284802-51286455 transcript_region:SL2.40ch04:51284802..51286455+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014664g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|0.75|0.66|0.75|4|0|180; (*GB) gi|40949663|gb|AAR97545.1| (e_value=2e-90) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=4e-87) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT3G62020.1 (e_value=2e-78) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc01g102390.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:82977692-82979772 transcript_region:SL2.40ch01:82977692..82979772+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00014664g0012.1 protein AED:0.14 eAED:0.14 QI:236|0.6|0.33|1|1|1|6|0|1181; (*GB) gi|464380|sp|P33530.1|PHYA1_TOBAC (e_value=0.0) RecName: Full=Phytochrome A1;; (*SWP) sp|P33530|PHYA1_TOBAC (e_value=0.0) Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1;; (*TAIR) AT1G09570.1 (e_value=0.0) | Symbols: PHYA, FHY2, FRE1, HY8 | phytochrome A | chr1:3095498-3099216 REVERSE LENGTH=1122;; (*ITAG) Solyc10g044670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:22854459-22859333 transcript_region:SL2.40ch10:22854459..22859333+ go_terms:GO:0042802,GO:0009883 functional_description:"Phytochrome A"; GO:0042802,GO:0009883 NbS00027179g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|388522051|gb|AFK49087.1| (e_value=1e-60) unknown [Lotus japonicus];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=6e-62) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=8e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=1e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00027179g0009.1 protein AED:0.32 eAED:0.32 QI:315|1|0.66|1|0|0|3|0|240; (*GB) gi|359497031|ref|XP_003635403.1| (e_value=7e-102) PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis vinifera];; (*SWP) sp|Q2T9S3|RPC6_BOVIN (e_value=3e-30) DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1;; (*TAIR) AT5G23710.1 (e_value=2e-63) | Symbols: | DNA binding;DNA-directed RNA polymerases | chr5:7996528-7997220 REVERSE LENGTH=230;; (*ITAG) Solyc08g075580.1.1 (e_value=6e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:56904308-56904769 transcript_region:SL2.40ch08:56904308..56904769- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit F (AHRD V1 ***- B0XD81_CULQU); contains Interpro domain(s) IPR007832 RNA polymerase Rpc34 "; GO:0005634 NbS00027179g0010.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|0.5|0.33|3|0|104; (*GB) gi|147855067|emb|CAN82376.1| (e_value=4e-18) hypothetical protein VITISV_024048 [Vitis vinifera];; (*ITAG) Solyc08g075590.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56906117-56909996 transcript_region:SL2.40ch08:56906117..56909996- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00026251g0006.1 protein AED:0.04 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|393; (*GB) gi|164454783|dbj|BAF96938.1| (e_value=0.0) flavanone 3-hydroxylase [Nicotiana tabacum];; (*SWP) sp|Q07353|FL3H_PETHY (e_value=0.0) Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Petunia hybrida GN=AN3 PE=1 SV=1;; (*TAIR) AT3G51240.1 (e_value=0.0) | Symbols: F3H, TT6, F3'H | flavanone 3-hydroxylase | chr3:19025409-19026658 FORWARD LENGTH=358;; (*ITAG) Solyc02g083860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41699714-41701777 transcript_region:SL2.40ch02:41699714..41701777- go_terms:GO:0016491 functional_description:"Flavanone 3-hydroxylase (AHRD V1 ***- A9ZMI9_TOBAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00026251g0010.1 protein AED:0.25 eAED:0.25 QI:0|1|0.91|1|0.90|0.91|12|0|571; (*GB) gi|16904224|gb|AAL30819.1|AF435451_1 (e_value=0.0) calcium-dependent protein kinase CPK4 [Nicotiana tabacum];; (*SWP) sp|Q7XJR9|CDPKG_ARATH (e_value=0.0) Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1;; (*TAIR) AT2G17890.1 (e_value=0.0) | Symbols: CPK16 | calcium-dependent protein kinase 16 | chr2:7769885-7772627 REVERSE LENGTH=571;; (*ITAG) Solyc02g083850.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41690032-41695031 transcript_region:SL2.40ch02:41690032..41695031- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** C6KGT3_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00026251g0008.1 protein AED:0.12 eAED:0.12 QI:18|0.5|0.66|1|1|1|3|136|115 NbS00014898g0001.1 protein AED:0.12 eAED:0.12 QI:169|0.8|0.83|1|0|0|6|867|855; (*GB) gi|225464790|ref|XP_002268064.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera];; (*SWP) sp|O81028|PP171_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=2 SV=1;; (*TAIR) AT2G26790.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:11425270-11427669 REVERSE LENGTH=799;; (*ITAG) Solyc05g012920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6046907-6049585 transcript_region:SL2.40ch05:6046907..6049585- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEU3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00000339g0009.1 protein AED:0.18 eAED:0.19 QI:0|0.83|0.57|1|0.66|0.42|7|0|624; (*GB) gi|225446267|ref|XP_002267381.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257549 [Vitis vinifera];; (*TAIR) AT1G15910.1 (e_value=0.0) | Symbols: | XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634;; (*ITAG) Solyc03g117040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60351139-60357181 transcript_region:SL2.40ch03:60351139..60357181- functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00000339g0010.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|297; (*GB) gi|255579246|ref|XP_002530469.1| (e_value=7e-138) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q28HE5|S38A6_XENTR (e_value=1e-18) Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1;; (*TAIR) AT1G80510.1 (e_value=3e-137) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=1e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00000339g0011.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0|2|0|180; (*GB) gi|255579246|ref|XP_002530469.1| (e_value=7e-57) amino acid transporter, putative [Ricinus communis];; (*TAIR) AT1G80510.1 (e_value=3e-55) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=1e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00007183g0014.1 protein AED:0.14 eAED:0.14 QI:63|0.75|0.61|1|0.83|0.84|13|126|1180; (*GB) gi|147787893|emb|CAN71750.1| (e_value=3e-33) hypothetical protein VITISV_040593 [Vitis vinifera];; (*SWP) sp|Q2R9D2|Y1176_ORYSJ (e_value=8e-15) B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica GN=Os11g0197600 PE=2 SV=1;; (*TAIR) AT1G49480.1 (e_value=1e-15) | Symbols: RTV1 | related to vernalization1 1 | chr1:18314596-18315460 REVERSE LENGTH=226;; (*ITAG) Solyc02g021260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:13096096-13102938 transcript_region:SL2.40ch02:13096096..13102938+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 *-*- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00007183g0016.1 protein AED:0.39 eAED:0.40 QI:0|0.5|0.66|1|0.5|0.66|3|292|142; (*GB) gi|40549303|gb|AAR87711.1| (e_value=5e-95) salicylic acid-binding protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=4e-49) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23570.1 (e_value=6e-49) | Symbols: MES19, ATMES19 | methyl esterase 19 | chr2:10031713-10032753 REVERSE LENGTH=228;; (*ITAG) Solyc03g070380.2.1 (e_value=6e-90) genomic_reference:SL2.40ch03 gene_region:39160640-39165492 transcript_region:SL2.40ch03:39160640..39165492+ go_terms:GO:0080030,GO:0080032 functional_description:"Methyl jasmonate esterase (AHRD V1 **-* Q56SE1_SOLTU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080030,GO:0080032 NbS00007183g0012.1 protein AED:0.49 eAED:0.49 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|40549303|gb|AAR87711.1| (e_value=7e-76) salicylic acid-binding protein 2 [Nicotiana tabacum];; (*SWP) sp|Q9SE93|PNAE_RAUSE (e_value=2e-50) Polyneuridine-aldehyde esterase OS=Rauvolfia serpentina GN=PNAE PE=1 SV=1;; (*TAIR) AT2G23600.1 (e_value=4e-52) | Symbols: ACL, ATMES2, MES2, ATME8, ME8 | acetone-cyanohydrin lyase | chr2:10042325-10043641 REVERSE LENGTH=263;; (*ITAG) Solyc03g070380.2.1 (e_value=8e-73) genomic_reference:SL2.40ch03 gene_region:39160640-39165492 transcript_region:SL2.40ch03:39160640..39165492+ go_terms:GO:0080030,GO:0080032 functional_description:"Methyl jasmonate esterase (AHRD V1 **-* Q56SE1_SOLTU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0080030,GO:0080032 NbS00007183g0004.1 protein AED:0.38 eAED:0.81 QI:197|0|0.5|1|0|0.5|2|0|267 NbS00007183g0020.1 protein AED:0.14 eAED:0.20 QI:214|0.5|0.6|0.8|0.5|0.4|5|195|128 NbS00007183g0105.1 protein AED:0.20 eAED:0.20 QI:240|1|0.4|1|0.5|0.8|5|0|462 NbS00007183g0103.1 protein AED:0.53 eAED:0.69 QI:0|0|0|0.66|1|1|3|0|75 NbS00023964g0005.1 protein AED:0.21 eAED:0.22 QI:163|0.5|0.4|1|0.75|0.6|5|0|192; (*GB) gi|359485531|ref|XP_003633287.1| (e_value=6e-71) PREDICTED: lipid-A-disaccharide synthase-like [Vitis vinifera];; (*SWP) sp|B6IST7|LPXB_RHOCS (e_value=5e-24) Lipid-A-disaccharide synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=lpxB PE=3 SV=1;; (*TAIR) AT2G04560.1 (e_value=7e-66) | Symbols: | transferases, transferring glycosyl groups | chr2:1590341-1592667 REVERSE LENGTH=460;; (*ITAG) Solyc07g049740.2.1 (e_value=3e-98) genomic_reference:SL2.40ch07 gene_region:57410329-57416117 transcript_region:SL2.40ch07:57410329..57416117+ go_terms:GO:0005515 functional_description:"Lipid-A-disaccharide synthase-like protein (AHRD V1 ***- D8QYK7_SELML); contains Interpro domain(s) IPR003835 Glycosyl transferase, family 19 "; GO:0005515 NbS00008116g0004.1 protein AED:0.11 eAED:0.11 QI:515|1|0.85|1|0.66|0.71|7|0|391; (*GB) gi|356499495|ref|XP_003518575.1| (e_value=0.0) PREDICTED: TBC1 domain family member 2A-like [Glycine max];; (*SWP) sp|Q9BYX2|TBD2A_HUMAN (e_value=2e-55) TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3;; (*TAIR) AT3G07890.2 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:2516639-2518784 REVERSE LENGTH=400;; (*ITAG) Solyc07g049580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57242622-57247236 transcript_region:SL2.40ch07:57242622..57247236+ go_terms:GO:0005097,GO:0030165 functional_description:"TBC1 domain family member 2 (AHRD V1 **** Q5TBQ7_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005097,GO:0030165 NbS00006847g0001.1 protein AED:0.36 eAED:0.36 QI:284|0|0.5|1|0|0.5|2|0|73; (*GB) gi|255638594|gb|ACU19604.1| (e_value=3e-37) unknown [Glycine max];; (*SWP) sp|Q94KK7|SYP52_ARATH (e_value=3e-29) Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1;; (*TAIR) AT1G79590.2 (e_value=2e-30) | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 | chr1:29947064-29948304 FORWARD LENGTH=233;; (*ITAG) Solyc12g014550.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5553309-5554724 transcript_region:SL2.40ch12:5553309..5554724+ functional_description:"Syntaxin-52 (AHRD V1 ***- SYP52_ARATH)"; NbS00035166g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|439; (*GB) gi|13785209|emb|CAC37356.1| (e_value=0.0) putative membrane protein [Solanum tuberosum];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=1e-16) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=8e-137) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc05g041910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:53328283-53331147 transcript_region:SL2.40ch05:53328283..53331147+ functional_description:"Membrane protein (AHRD V1 **-- B6U5U8_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00005128g0014.1 protein AED:0.13 eAED:0.15 QI:0|0|0|0.75|0|0.25|4|0|671; (*GB) gi|359481281|ref|XP_002267556.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267833 [Vitis vinifera];; (*SWP) sp|Q9M020|LRK63_ARATH (e_value=0.0) Lectin-domain containing receptor kinase VI.3 OS=Arabidopsis thaliana GN=LECRK63 PE=2 SV=1;; (*TAIR) AT5G01550.1 (e_value=0.0) | Symbols: LECRKA4.2 | lectin receptor kinase a4.1 | chr5:214517-216583 REVERSE LENGTH=688;; (*ITAG) Solyc09g005000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:6033-8057 transcript_region:SL2.40ch09:6033..8057+ go_terms:GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0016301 NbS00005128g0013.1 protein AED:0.07 eAED:0.07 QI:5|0.2|0|0.83|0.8|0.5|6|0|954; (*GB) gi|125585909|gb|EAZ26573.1| (e_value=0.0) hypothetical protein OsJ_10469 [Oryza sativa Japonica Group];; (*SWP) sp|O13864|IMB1_SCHPO (e_value=8e-77) Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=2 SV=1;; (*TAIR) AT3G08943.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00061866g0004.1 protein AED:0.19 eAED:0.19 QI:178|0.8|0.5|1|0.8|0.66|6|0|454; (*GB) gi|225439781|ref|XP_002276042.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=1e-172) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G02800.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:635545-637374 REVERSE LENGTH=378;; (*ITAG) Solyc09g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:793123-799599 transcript_region:SL2.40ch09:793123..799599- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00033605g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|0.66|1|1|3|0|214; (*GB) gi|143023740|gb|ABO93067.1| (e_value=3e-72) SISTER OF EVERGREEN [Petunia x hybrida];; (*SWP) sp|Q6X7J4|WOX9_ARATH (e_value=3e-17) WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1;; (*TAIR) AT2G33880.1 (e_value=2e-18) | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:14341639-14343597 REVERSE LENGTH=378;; (*ITAG) Solyc02g077390.1.1 (e_value=6e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36913957-36915889 transcript_region:SL2.40ch02:36913957..36915889- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 11 (AHRD V1 *-*- B6SN57_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbC25231990g0002.1 protein AED:0.12 eAED:0.12 QI:79|-1|0|1|-1|0|1|0|212; (*GB) gi|225458665|ref|XP_002282892.1| (e_value=2e-32) PREDICTED: uncharacterized protein LOC100267740 [Vitis vinifera];; (*ITAG) Solyc04g078680.2.1 (e_value=7e-86) genomic_reference:SL2.40ch04 gene_region:60972448-60976501 transcript_region:SL2.40ch04:60972448..60976501+ go_terms:GO:0031177,GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 *-*- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0031177,GO:0008270 NbC26002859g0001.1 protein AED:0.20 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|225449444|ref|XP_002283100.1| (e_value=9e-36) PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera];; (*TAIR) AT3G46620.1 (e_value=3e-26) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:17178837-17180024 REVERSE LENGTH=395;; (*ITAG) Solyc04g011610.1.1 (e_value=2e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4048148-4049335 transcript_region:SL2.40ch04:4048148..4049335+ go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_CHICK); contains Interpro domain(s) IPR010543 Protein of unknown function DUF1117 "; GO:0008270 NbS00003247g0008.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|74; (*ITAG) Solyc12g006400.1.1 (e_value=7e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:895890-896690 transcript_region:SL2.40ch12:895890..896690+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003247g0016.1 protein AED:0.00 eAED:0.00 QI:61|1|1|1|1|1|2|215|440; (*GB) gi|225424981|ref|XP_002266304.1| (e_value=3e-173) PREDICTED: UDP-glycosyltransferase 82A1 [Vitis vinifera];; (*SWP) sp|Q9LHJ2|U82A1_ARATH (e_value=1e-147) UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana GN=UGT82A1 PE=2 SV=1;; (*TAIR) AT3G22250.1 (e_value=8e-149) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7867806-7870053 FORWARD LENGTH=461;; (*ITAG) Solyc12g006430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00003247g0015.1 protein AED:0.12 eAED:0.12 QI:273|1|0.8|1|1|1|5|0|817; (*GB) gi|225465743|ref|XP_002264820.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255521 [Vitis vinifera];; (*TAIR) AT3G22270.1 (e_value=0.0) | Symbols: | Topoisomerase II-associated protein PAT1 | chr3:7874480-7877857 FORWARD LENGTH=782;; (*ITAG) Solyc12g006420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:903491-908840 transcript_region:SL2.40ch12:903491..908840- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00003247g0017.1 protein AED:0.19 eAED:0.19 QI:0|0.44|0.4|0.8|0.55|0.5|10|0|365; (*GB) gi|225444161|ref|XP_002270765.1| (e_value=0.0) PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=0.0) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.3 (e_value=0.0) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=418;; (*ITAG) Solyc12g006410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:898344-901102 transcript_region:SL2.40ch12:898344..901102- go_terms:GO:0006012,GO:0044237,GO:0008152 functional_description:"UDP-glucose 4-epimerase (AHRD V1 ***- B3XXH6_9BACT); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0006012,GO:0044237,GO:0008152 NbS00003247g0020.1 protein AED:0.55 eAED:0.66 QI:0|0|0|0.5|0|0.5|2|0|107; (*ITAG) Solyc12g006430.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00003247g0019.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|152; (*GB) gi|225424981|ref|XP_002266304.1| (e_value=1e-53) PREDICTED: UDP-glycosyltransferase 82A1 [Vitis vinifera];; (*SWP) sp|Q9LHJ2|U82A1_ARATH (e_value=6e-42) UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana GN=UGT82A1 PE=2 SV=1;; (*TAIR) AT3G22250.1 (e_value=4e-43) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7867806-7870053 FORWARD LENGTH=461;; (*ITAG) Solyc12g006430.1.1 (e_value=3e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00005404g0011.1 protein AED:0.08 eAED:0.08 QI:946|0.94|0.94|1|1|1|18|292|843; (*GB) gi|255549852|ref|XP_002515977.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=0.0) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.1 (e_value=0.0) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19409913-19413961 REVERSE LENGTH=836;; (*ITAG) Solyc03g120910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63195847-63202781 transcript_region:SL2.40ch03:63195847..63202781+ go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00005404g0005.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=7e-86) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=2e-44) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=7e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00005404g0004.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|225442495|ref|XP_002278380.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100254824 [Vitis vinifera];; (*TAIR) AT5G25840.1 (e_value=1e-41) | Symbols: | Protein of unknown function (DUF1677) | chr5:9010909-9011430 REVERSE LENGTH=173;; (*ITAG) Solyc03g120920.1.1 (e_value=9e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:63202977-63203531 transcript_region:SL2.40ch03:63202977..63203531- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00005404g0016.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|0.5|2|0|401; (*GB) gi|225442507|ref|XP_002284028.1| (e_value=5e-103) PREDICTED: GATA transcription factor 9 [Vitis vinifera];; (*SWP) sp|P69781|GAT12_ARATH (e_value=4e-69) GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1;; (*TAIR) AT5G25830.1 (e_value=3e-70) | Symbols: GATA12 | GATA transcription factor 12 | chr5:9004398-9005502 REVERSE LENGTH=331;; (*ITAG) Solyc03g120890.2.1 (e_value=3e-146) genomic_reference:SL2.40ch03 gene_region:63175276-63176950 transcript_region:SL2.40ch03:63175276..63176950- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00005404g0013.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|301; (*GB) gi|356567320|ref|XP_003551869.1| (e_value=0.0) PREDICTED: protein SEC13 homolog [Glycine max];; (*SWP) sp|Q9D1M0|SEC13_MOUSE (e_value=2e-105) Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3;; (*TAIR) AT2G30050.1 (e_value=3e-179) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc03g120900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63180719-63181624 transcript_region:SL2.40ch03:63180719..63181624- go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00008898g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.78|0.53|0.93|0.5|0.6|15|420|790; (*GB) gi|359482596|ref|XP_002279481.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243006 [Vitis vinifera];; (*TAIR) AT1G15240.3 (e_value=3e-171) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr1:5243799-5248498 FORWARD LENGTH=1012;; (*ITAG) Solyc12g044220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44542863-44552185 transcript_region:SL2.40ch12:44542863..44552185- go_terms:GO:0007154 functional_description:"AT1G15240 (Fragment) (AHRD V1 *-*- Q6DT71_ARALP); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00008898g0009.1 protein AED:0.81 eAED:1.00 QI:0|0|0|0.33|0.5|0.66|3|0|65 NbS00016818g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|0|1|2|0|423; (*GB) gi|359473323|ref|XP_003631291.1| (e_value=8e-146) PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera];; (*SWP) sp|Q8YRI1|YY46_NOSS1 (e_value=4e-14) Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1;; (*TAIR) AT1G24130.1 (e_value=3e-119) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:8534183-8535430 REVERSE LENGTH=415;; (*ITAG) Solyc05g006340.2.1 (e_value=3e-169) genomic_reference:SL2.40ch05 gene_region:990212-992535 transcript_region:SL2.40ch05:990212..992535- go_terms:GO:0000166 functional_description:"WD-40 repeat family protein (AHRD V1 **-- Q1EPE0_MUSAC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00016818g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|0.5|0|0.5|2|129|66 NbS00029415g0004.1 protein AED:0.03 eAED:0.03 QI:197|1|1|1|1|1|4|112|903; (*GB) gi|359487626|ref|XP_002279574.2| (e_value=0.0) PREDICTED: formin-like protein 11-like [Vitis vinifera];; (*SWP) sp|Q9MA60|FH11_ARATH (e_value=0.0) Formin-like protein 11 OS=Arabidopsis thaliana GN=FH11 PE=2 SV=1;; (*TAIR) AT3G05470.1 (e_value=0.0) | Symbols: | Actin-binding FH2 (formin homology 2) family protein | chr3:1579667-1582547 REVERSE LENGTH=884;; (*ITAG) Solyc01g099650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81593305-81596806 transcript_region:SL2.40ch01:81593305..81596806+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00018947g0004.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|1|1|4|0|227; (*GB) gi|292630750|sp|D1I234.1|DRE2_VITVI (e_value=3e-65) RecName: Full=Anamorsin homolog; AltName: Full=Fe-S cluster assembly protein DRE2 homolog;; (*SWP) sp|D1I234|DRE2_VITVI (e_value=8e-67) Anamorsin homolog OS=Vitis vinifera GN=VIT_01s0010g01180 PE=3 SV=1;; (*TAIR) AT5G18400.1 (e_value=3e-45) | Symbols: | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | chr5:6092955-6094566 REVERSE LENGTH=269;; (*ITAG) Solyc03g119420.2.1 (e_value=8e-106) genomic_reference:SL2.40ch03 gene_region:62090764-62095229 transcript_region:SL2.40ch03:62090764..62095229+ go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00060423g0005.1 protein AED:0.04 eAED:0.07 QI:27|1|0.66|1|1|1|3|0|260; (*GB) gi|222820580|gb|ACM67640.1| (e_value=1e-136) BTB-POZ and MATH domain protein [Capsicum annuum];; (*SWP) sp|Q9SRV1|BPM4_ARATH (e_value=3e-99) BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana GN=BPM4 PE=1 SV=1;; (*TAIR) AT3G03740.1 (e_value=2e-100) | Symbols: ATBPM4, BPM4 | BTB-POZ and MATH domain 4 | chr3:937106-939807 REVERSE LENGTH=465;; (*ITAG) Solyc01g009060.2.1 (e_value=9e-151) genomic_reference:SL2.40ch01 gene_region:3067813-3074739 transcript_region:SL2.40ch01:3067813..3074739+ go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00060423g0002.1 protein AED:0.27 eAED:0.27 QI:100|1|0.66|1|0.5|0.33|3|0|482; (*GB) gi|350538739|ref|NP_001234357.1| (e_value=0.0) GAMyb-like1 [Solanum lycopersicum];; (*SWP) sp|A2WW87|GAM1_ORYSI (e_value=7e-87) Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1;; (*TAIR) AT3G11440.1 (e_value=3e-74) | Symbols: ATMYB65, MYB65 | myb domain protein 65 | chr3:3603056-3604929 FORWARD LENGTH=553;; (*ITAG) Solyc01g009070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3075589-3080069 transcript_region:SL2.40ch01:3075589..3080069- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FR97_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00050615g0007.1 protein AED:0.08 eAED:0.08 QI:77|1|1|1|1|1|9|23|476; (*GB) gi|225439615|ref|XP_002267787.1| (e_value=0.0) PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SR86|AGT23_ARATH (e_value=0.0) Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At3g08860 PE=2 SV=1;; (*TAIR) AT3G08860.1 (e_value=0.0) | Symbols: PYD4 | PYRIMIDINE 4 | chr3:2696754-2699087 REVERSE LENGTH=481;; (*ITAG) Solyc10g076250.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58474750-58478564 transcript_region:SL2.40ch10:58474750..58478564+ go_terms:GO:0030170 functional_description:"Aminotransferase like protein (AHRD V1 ***- Q0WWF1_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00050615g0006.1 protein AED:0.11 eAED:0.18 QI:589|0.5|0.33|1|1|0.66|3|0|106; (*GB) gi|359481185|ref|XP_003632588.1| (e_value=1e-16) PREDICTED: regulatory-associated protein of TOR 1-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q93YQ1|RTOR1_ARATH (e_value=5e-18) Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1;; (*TAIR) AT3G08850.1 (e_value=4e-19) | Symbols: RAPTOR1B, ATRAPTOR1B, RAPTOR1 | HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344;; (*ITAG) Solyc09g014780.2.1 (e_value=2e-20) genomic_reference:SL2.40ch09 gene_region:6917876-6935366 transcript_region:SL2.40ch09:6917876..6935366+ go_terms:GO:0032403 functional_description:"WD-repeat protein mip1 (AHRD V1 *--- C5FLG0_NANOT); contains Interpro domain(s) IPR004083 Regulatory associated protein of TOR "; GO:0032403 NbS00012015g0002.1 protein AED:0.00 eAED:0.00 QI:140|1|1|1|1|1|3|197|181; (*GB) gi|365818545|gb|AEX00361.1| (e_value=1e-95) IAA19 [Solanum lycopersicum];; (*SWP) sp|P13088|AUX22_SOYBN (e_value=4e-71) Auxin-induced protein AUX22 OS=Glycine max GN=AUX22 PE=2 SV=1;; (*TAIR) AT3G15540.1 (e_value=3e-58) | Symbols: IAA19, MSG2 | indole-3-acetic acid inducible 19 | chr3:5264100-5265378 FORWARD LENGTH=197;; (*ITAG) Solyc03g120380.2.1 (e_value=3e-98) genomic_reference:SL2.40ch03 gene_region:62855821-62857611 transcript_region:SL2.40ch03:62855821..62857611+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00013266g0006.1 protein AED:0.12 eAED:0.12 QI:245|0.8|0.81|1|0.6|0.54|11|0|491; (*GB) gi|225439904|ref|XP_002279705.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 57 [Vitis vinifera];; (*SWP) sp|Q84TG1|RH57_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1;; (*TAIR) AT3G09720.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:2980483-2983268 REVERSE LENGTH=541;; (*ITAG) Solyc09g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:999717-1005511 transcript_region:SL2.40ch09:999717..1005511- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A1EC69_RAT); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00054960g0006.1 protein AED:0.02 eAED:0.02 QI:52|1|1|1|1|1|2|219|500; (*GB) gi|7385017|gb|AAF61647.1|AF190634_1 (e_value=0.0) UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|O22822|U74F2_ARATH (e_value=1e-144) UDP-glycosyltransferase 74F2 OS=Arabidopsis thaliana GN=UGT74F2 PE=1 SV=1;; (*TAIR) AT2G43820.1 (e_value=1e-145) | Symbols: GT, UGT74F2, ATSAGT1, SGT1, SAGT1 | UDP-glucosyltransferase 74F2 | chr2:18152279-18153715 FORWARD LENGTH=449;; (*ITAG) Solyc08g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:990397-992206 transcript_region:SL2.40ch08:990397..992206- go_terms:GO:0080002 functional_description:"UDP-glucose salicylic acid glucosyltransferase (AHRD V1 **** Q9M6E7_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00054960g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|455; (*GB) gi|7385017|gb|AAF61647.1|AF190634_1 (e_value=0.0) UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|O22820|U74F1_ARATH (e_value=3e-152) UDP-glycosyltransferase 74F1 OS=Arabidopsis thaliana GN=UGT74F1 PE=1 SV=1;; (*TAIR) AT2G43840.2 (e_value=1e-154) | Symbols: UGT74F1 | UDP-glycosyltransferase 74 F1 | chr2:18157681-18159166 FORWARD LENGTH=449;; (*ITAG) Solyc08g006330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:990397-992206 transcript_region:SL2.40ch08:990397..992206- go_terms:GO:0080002 functional_description:"UDP-glucose salicylic acid glucosyltransferase (AHRD V1 **** Q9M6E7_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080002 NbS00002613g0002.1 protein AED:0.00 eAED:0.00 QI:313|1|1|1|0.5|0.33|3|248|147; (*GB) gi|225465177|ref|XP_002264097.1| (e_value=9e-66) PREDICTED: uncharacterized protein LOC100255705 [Vitis vinifera];; (*TAIR) AT1G09812.1 (e_value=6e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3187817-3188580 FORWARD LENGTH=128;; (*ITAG) Solyc01g103500.2.1 (e_value=5e-63) genomic_reference:SL2.40ch01 gene_region:83854696-83855634 transcript_region:SL2.40ch01:83854696..83855634- functional_description:"Unknown Protein (AHRD V1)"; NbS00041648g0004.1 protein AED:0.15 eAED:0.17 QI:365|0.90|0.75|1|0.90|0.91|12|0|868; (*GB) gi|225442450|ref|XP_002277939.1| (e_value=0.0) PREDICTED: poly(A) polymerase-like [Vitis vinifera];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=2e-138) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT4G32850.9 (e_value=0.0) | Symbols: nPAP | nuclear poly(a) polymerase | chr4:15850134-15854351 FORWARD LENGTH=745;; (*ITAG) Solyc06g066470.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38113428-38118914 transcript_region:SL2.40ch06:38113428..38118914- go_terms:GO:0005515,GO:0004652 functional_description:"Poly(A) polymerase (AHRD V1 ***- D7M9N5_ARALY); contains Interpro domain(s) IPR014492 Poly(A) polymerase "; GO:0005515,GO:0004652 NbS00012895g0009.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|2|0|159; (*GB) gi|297744116|emb|CBI37086.3| (e_value=3e-71) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42450.1 (e_value=8e-73) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17672425-17674854 REVERSE LENGTH=546;; (*ITAG) Solyc06g083920.2.1 (e_value=4e-76) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00012895g0005.1 protein AED:0.47 eAED:0.52 QI:0|1|0|1|1|1|2|0|196; (*GB) gi|297744116|emb|CBI37086.3| (e_value=1e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42450.1 (e_value=2e-37) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17672425-17674854 REVERSE LENGTH=546;; (*ITAG) Solyc06g083920.2.1 (e_value=5e-63) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00012895g0002.1 protein AED:0.57 eAED:0.66 QI:0|-1|0|1|-1|1|1|0|113; (*ITAG) Solyc06g083920.2.1 (e_value=3e-14) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00044566g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.58|0.30|1|0.5|0.46|13|0|1654; (*GB) gi|225451358|ref|XP_002279923.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267561 [Vitis vinifera];; (*SWP) sp|P0CB66|MED14_DICDI (e_value=2e-33) Putative mediator of RNA polymerase II transcription subunit 14 OS=Dictyostelium discoideum GN=med14 PE=3 SV=1;; (*TAIR) AT3G04740.1 (e_value=0.0) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbC23429524g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0|2|0|46; (*GB) gi|386277419|gb|AFJ04408.1| (e_value=1e-24) 5-epi-aristolochene synthase [Nicotiana tabacum];; (*SWP) sp|Q84LG0|5EAS4_NICAT (e_value=6e-26) Probable 5-epi-aristolochene synthase 4 OS=Nicotiana attenuata PE=2 SV=1;; (*ITAG) Solyc01g101210.2.1 (e_value=6e-24) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00036467g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|345; (*GB) gi|359482148|ref|XP_002281267.2| (e_value=2e-178) PREDICTED: F-box/kelch-repeat protein At2g44130 [Vitis vinifera];; (*SWP) sp|Q9LMR5|FK126_ARATH (e_value=2e-65) F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1;; (*TAIR) AT1G15670.1 (e_value=1e-66) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5390119-5391198 FORWARD LENGTH=359;; (*ITAG) Solyc10g080610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61166125-61167159 transcript_region:SL2.40ch10:61166125..61167159+ functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00057200g0006.1 protein AED:0.34 eAED:0.34 QI:387|0.9|0.81|1|0.6|0.81|11|226|154; (*GB) gi|227462435|gb|ABI49160.2| (e_value=9e-104) SM10-1 [Nicotiana tabacum];; (*SWP) sp|Q6PH85|DCNL2_HUMAN (e_value=3e-39) DCN1-like protein 2 OS=Homo sapiens GN=DCUN1D2 PE=2 SV=1;; (*TAIR) AT3G12760.1 (e_value=4e-87) | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250;; (*ITAG) Solyc07g066650.2.1 (e_value=5e-102) genomic_reference:SL2.40ch07 gene_region:65228371-65238555 transcript_region:SL2.40ch07:65228371..65238555- go_terms:GO:0043130 functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00005817g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|112; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-18) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc10g044500.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00005817g0003.1 protein AED:0.56 eAED:0.62 QI:29|0|0|0.66|0|0|3|0|154; (*ITAG) Solyc01g059760.1.1 (e_value=9e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00029758g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|0|379; (*GB) gi|225432236|ref|XP_002270713.1| (e_value=6e-140) PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera];; (*SWP) sp|Q8RXW0|Y3761_ARATH (e_value=4e-118) Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1;; (*TAIR) AT3G17611.1 (e_value=3e-119) | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 | chr3:6024946-6026173 FORWARD LENGTH=334;; (*ITAG) Solyc07g042930.2.1 (e_value=9e-153) genomic_reference:SL2.40ch07 gene_region:53809257-53811891 transcript_region:SL2.40ch07:53809257..53811891+ go_terms:GO:0016021,GO:0005622 functional_description:"Rhomboid domain-containing protein 1 (AHRD V1 *-*- B5X3K7_SALSA); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021,GO:0005622 NbS00029758g0005.1 protein AED:0.07 eAED:0.11 QI:60|0|0.5|1|0|0|2|0|246; (*GB) gi|255559094|ref|XP_002520569.1| (e_value=2e-38) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|O65399|E131_ARATH (e_value=6e-20) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G79480.2 (e_value=5e-33) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=396;; (*ITAG) Solyc05g016390.2.1 (e_value=2e-52) genomic_reference:SL2.40ch05 gene_region:16038482-16039802 transcript_region:SL2.40ch05:16038482..16039802- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00061170g0009.1 protein AED:0.10 eAED:0.17 QI:0|0.5|0.22|1|0.25|0.22|9|0|758; (*GB) gi|359489932|ref|XP_002266946.2| (e_value=5e-139) PREDICTED: uncharacterized protein LOC100244234 [Vitis vinifera];; (*TAIR) AT1G17820.1 (e_value=5e-114) | Symbols: | Putative integral membrane protein conserved region (DUF2404) | chr1:6131751-6135115 REVERSE LENGTH=803;; (*ITAG) Solyc03g019770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6700644-6709961 transcript_region:SL2.40ch03:6700644..6709961+ go_terms:GO:0035091 functional_description:"Uncharacterized PH domain-containing protein (AHRD V1 *--- C5GPT3_AJEDR); contains Interpro domain(s) IPR019411 Protein of unknown function DUF2404, transmembrane "; GO:0035091 NbS00061170g0008.1 protein AED:0.09 eAED:0.09 QI:183|1|0.8|1|1|1|5|207|298; (*GB) gi|78191420|gb|ABB29931.1| (e_value=2e-167) P40-like protein [Solanum tuberosum];; (*SWP) sp|O80377|RSSA_DAUCA (e_value=5e-143) 40S ribosomal protein SA OS=Daucus carota GN=179B PE=2 SV=1;; (*TAIR) AT1G72370.2 (e_value=2e-140) | Symbols: P40, AP40, RP40, RPSAA | 40s ribosomal protein SA | chr1:27243148-27244842 REVERSE LENGTH=294;; (*ITAG) Solyc03g019780.2.1 (e_value=4e-170) genomic_reference:SL2.40ch03 gene_region:6711619-6713828 transcript_region:SL2.40ch03:6711619..6713828- go_terms:GO:0043236 functional_description:"40S ribosomal protein SA (AHRD V1 ***- B6T6X2_MAIZE); contains Interpro domain(s) IPR005707 Ribosomal protein S2, eukaryotic/archaeal "; GO:0043236 NbS00006928g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.75|1|0.33|0.25|4|0|165; (*ITAG) Solyc02g068250.2.1 (e_value=5e-14) genomic_reference:SL2.40ch02 gene_region:32821758-32822119 transcript_region:SL2.40ch02:32821758..32822119- functional_description:"Unknown Protein (AHRD V1)"; NbS00006928g0008.1 protein AED:0.12 eAED:0.12 QI:1408|0.7|0.72|1|0.8|0.72|11|301|527; (*GB) gi|350536917|ref|NP_001234783.1| (e_value=0.0) auxin response factor 8 [Solanum lycopersicum];; (*SWP) sp|Q9FGV1|ARFH_ARATH (e_value=4e-138) Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2;; (*TAIR) AT5G37020.1 (e_value=3e-139) | Symbols: ARF8, ATARF8 | auxin response factor 8 | chr5:14630151-14634106 FORWARD LENGTH=811;; (*ITAG) Solyc02g037530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:21756443-21766699 transcript_region:SL2.40ch02:21756443..21766699+ go_terms:GO:0003700 functional_description:"Auxin response factor 8 (AHRD V1 **** A7L5C4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00050553g0006.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.4|1|1|5|0|96 NbS00050553g0002.1 protein AED:0.22 eAED:0.22 QI:174|0.5|0.6|0.8|0.75|0.6|5|0|367; (*GB) gi|225447223|ref|XP_002277857.1| (e_value=1e-93) PREDICTED: probable protein phosphatase 2C 52 [Vitis vinifera];; (*SWP) sp|Q9LR65|P2C01_ARATH (e_value=3e-76) Probable protein phosphatase 2C 1 OS=Arabidopsis thaliana GN=PPC6-6 PE=1 SV=1;; (*TAIR) AT1G03590.1 (e_value=2e-77) | Symbols: | Protein phosphatase 2C family protein | chr1:894480-896257 REVERSE LENGTH=462;; (*ITAG) Solyc07g054300.2.1 (e_value=1e-109) genomic_reference:SL2.40ch07 gene_region:59978549-59982341 transcript_region:SL2.40ch07:59978549..59982341+ go_terms:GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7KDP0_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00039335g0005.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.25|1|0.66|0.5|4|0|445; (*GB) gi|46405141|gb|AAS93430.1| (e_value=2e-82) formin homology 2 domain-containing protein 5 [Arabidopsis thaliana];; (*SWP) sp|Q94B77|FH5_ARATH (e_value=3e-83) Formin-like protein 5 OS=Arabidopsis thaliana GN=FH5 PE=2 SV=2;; (*TAIR) AT5G54650.2 (e_value=3e-84) | Symbols: Fh5, ATFH5 | formin homology5 | chr5:22197856-22201649 REVERSE LENGTH=900;; (*ITAG) Solyc07g064010.2.1 (e_value=9e-111) genomic_reference:SL2.40ch07 gene_region:63535612-63541449 transcript_region:SL2.40ch07:63535612..63541449- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00028071g0016.1 protein AED:0.05 eAED:0.06 QI:1|0.83|0.57|1|0.66|0.71|7|0|364; (*GB) gi|359492502|ref|XP_003634422.1| (e_value=2e-133) PREDICTED: uncharacterized protein LOC100852766 [Vitis vinifera];; (*ITAG) Solyc04g076490.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58957246-58968686 transcript_region:SL2.40ch04:58957246..58968686+ functional_description:"LvsC-like (AHRD V1 ***- Q655H7_ORYSJ)"; NbS00028071g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.94|0.83|0.94|1|1|18|0|1424; (*GB) gi|302142080|emb|CBI19283.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54U63|LVSC_DICDI (e_value=1e-136) BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2;; (*TAIR) AT1G58230.1 (e_value=0.0) | Symbols: | binding | chr1:21566331-21578865 FORWARD LENGTH=2604;; (*ITAG) Solyc04g076510.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58981166-58993135 transcript_region:SL2.40ch04:58981166..58993135+ functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; NbS00028071g0014.1 protein AED:0.18 eAED:0.19 QI:0|0.64|0.53|0.86|0.71|0.73|15|147|1089; (*GB) gi|255572880|ref|XP_002527372.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54U63|LVSC_DICDI (e_value=1e-65) BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2;; (*TAIR) AT1G58230.1 (e_value=0.0) | Symbols: | binding | chr1:21566331-21578865 FORWARD LENGTH=2604;; (*ITAG) Solyc04g076500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58968717-58976940 transcript_region:SL2.40ch04:58968717..58976940+ functional_description:"BEACH domain-containing protein (AHRD V1 **-- D3BT75_POLPA); contains Interpro domain(s) IPR008985 Concanavalin A-like lectin/glucanase "; NbS00014349g0001.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|202; (*GB) gi|225449430|ref|XP_002277994.1| (e_value=1e-61) PREDICTED: LOB domain-containing protein 33 [Vitis vinifera];; (*SWP) sp|Q9LHS8|LBD33_ARATH (e_value=5e-52) LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1;; (*TAIR) AT5G06080.1 (e_value=4e-53) | Symbols: LBD33 | LOB domain-containing protein 33 | chr5:1830796-1831427 REVERSE LENGTH=177;; (*ITAG) Solyc09g066270.2.1 (e_value=3e-47) genomic_reference:SL2.40ch09 gene_region:60295041-60296015 transcript_region:SL2.40ch09:60295041..60296015- functional_description:"LOB domain protein 14 (AHRD V1 ***- D7LD16_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00007826g0012.1 protein AED:0.19 eAED:0.19 QI:0|0.6|0.63|1|0.8|0.63|11|227|888; (*GB) gi|71726950|gb|AAZ39646.1| (e_value=0.0) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|Q50EK3|C04C1_PINTA (e_value=8e-150) Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1;; (*TAIR) AT2G45510.1 (e_value=8e-158) | Symbols: CYP704A2 | cytochrome P450, family 704, subfamily A, polypeptide 2 | chr2:18753085-18754944 FORWARD LENGTH=511;; (*ITAG) Solyc01g094080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77420534-77423172 transcript_region:SL2.40ch01:77420534..77423172- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007826g0013.1 protein AED:0.07 eAED:0.08 QI:275|0.78|0.78|0.93|0.81|0.78|33|0|2956; (*GB) gi|225453793|ref|XP_002270775.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247154 [Vitis vinifera];; (*SWP) sp|Q54U63|LVSC_DICDI (e_value=3e-114) BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2;; (*TAIR) AT2G45540.1 (e_value=0.0) | Symbols: | WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=2946;; (*ITAG) Solyc01g094060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77390869-77416002 transcript_region:SL2.40ch01:77390869..77416002+ go_terms:GO:0000166 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0000166 NbS00023892g0004.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|111 NbS00017021g0004.1 protein AED:0.17 eAED:0.18 QI:0|0.5|0|1|1|1|3|0|432; (*GB) gi|118153959|gb|ABK63970.1| (e_value=0.0) PT5 [Nicotiana tabacum];; (*SWP) sp|Q94DB8|PT111_ORYSJ (e_value=0.0) Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1;; (*TAIR) AT5G43350.1 (e_value=7e-165) | Symbols: ATPT1, PHT1;1 | phosphate transporter 1;1 | chr5:17399918-17401643 REVERSE LENGTH=524;; (*ITAG) Solyc06g051860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:32059398-32060987 transcript_region:SL2.40ch06:32059398..32060987- go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter 6 (AHRD V1 **** Q5CC71_MAIZE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00017021g0005.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|118153959|gb|ABK63970.1| (e_value=5e-100) PT5 [Nicotiana tabacum];; (*SWP) sp|Q94DB8|PT111_ORYSJ (e_value=9e-53) Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1;; (*TAIR) AT3G54700.1 (e_value=1e-39) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g051860.1.1 (e_value=2e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:32059398-32060987 transcript_region:SL2.40ch06:32059398..32060987- go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter 6 (AHRD V1 **** Q5CC71_MAIZE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00017021g0018.1 protein AED:0.06 eAED:0.06 QI:0|1|0.33|1|0.5|0.33|3|0|348; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=4e-154) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=3e-155) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc06g051920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32082202-32086782 transcript_region:SL2.40ch06:32082202..32086782+ go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00017021g0003.1 protein AED:0.36 eAED:0.39 QI:21|0.7|0.72|1|1|1|11|0|460; (*GB) gi|255545042|ref|XP_002513582.1| (e_value=0.0) polypyrimidine tract binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FGL9|PTBP2_ARATH (e_value=9e-170) Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1;; (*TAIR) AT5G53180.1 (e_value=7e-171) | Symbols: ATPTB2, PTB2 | polypyrimidine tract-binding protein 2 | chr5:21568393-21571537 REVERSE LENGTH=429;; (*ITAG) Solyc03g007320.2.1 (e_value=3e-143) genomic_reference:SL2.40ch03 gene_region:1880831-1890543 transcript_region:SL2.40ch03:1880831..1890543+ go_terms:GO:0005515 functional_description:"Polypyrimidine tract-binding protein 1-like (AHRD V1 **** Q5ZBG2_ORYSJ); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00008472g0005.1 protein AED:0.08 eAED:0.08 QI:73|1|1|1|0.5|1|3|0|200; (*GB) gi|226713184|sp|A7R385.1|CSPLC_VITVI (e_value=2e-88) RecName: Full=CASP-like protein GSVIVT00013502001;; (*SWP) sp|A7R385|CSPLC_VITVI (e_value=5e-90) CASP-like protein GSVIVT00013502001 OS=Vitis vinifera GN=GSVIVT00013502001 PE=2 SV=1;; (*TAIR) AT2G35760.1 (e_value=3e-69) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15032059-15033094 FORWARD LENGTH=201;; (*ITAG) Solyc11g012590.1.1 (e_value=7e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5386531-5389561 transcript_region:SL2.40ch11:5386531..5389561+ functional_description:"UPF0497 membrane protein 12 (AHRD V1 ***- U497C_VITVI); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00008472g0006.1 protein AED:0.37 eAED:0.38 QI:0|0|0.5|1|1|0.5|2|0|173; (*GB) gi|53793731|gb|AAU93594.1| (e_value=6e-105) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=4e-100) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=3e-101) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=1e-107) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00044073g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=5e-81) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=1e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=3e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00014924g0003.1 protein AED:0.47 eAED:0.85 QI:0|0|0.25|0.75|1|1|4|0|69 NbS00014924g0004.1 protein AED:0.26 eAED:0.50 QI:60|0|0|1|0|0|3|0|73; (*ITAG) Solyc01g007350.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:1856314-1857063 transcript_region:SL2.40ch01:1856314..1857063+ go_terms:GO:0009522 functional_description:"Photosystem I reaction center subunit VIII (AHRD V1 *-*- Q3V525_ACOCL); contains Interpro domain(s) IPR001302 Photosystem I reaction centre, subunit VIII "; GO:0009522 NbS00026709g0012.1 protein AED:0.09 eAED:0.09 QI:161|0.92|0.8|1|0.92|0.93|15|0|669; (*GB) gi|297737338|emb|CBI26539.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0A0E9|RELA_STAAW (e_value=1e-30) GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=3e-34) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g096900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52711245-52720659 transcript_region:SL2.40ch03:52711245..52720659- go_terms:GO:0015969,GO:0003824 functional_description:"GTP pyrophosphokinase (AHRD V1 *--- A4AJW6_9ACTN); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0003824 NbS00026709g0002.1 protein AED:0.16 eAED:0.16 QI:235|0.57|0.75|0.87|0.42|0.62|8|634|239; (*GB) gi|225454817|ref|XP_002274926.1| (e_value=6e-117) PREDICTED: ADP-ribosylation factor [Vitis vinifera];; (*SWP) sp|P61210|ARF1_LOCMI (e_value=1e-77) ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2;; (*TAIR) AT5G17060.1 (e_value=5e-116) | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor B1B | chr5:5611056-5612639 FORWARD LENGTH=192;; (*ITAG) Solyc06g072800.2.1 (e_value=2e-92) genomic_reference:SL2.40ch06 gene_region:41285773-41291236 transcript_region:SL2.40ch06:41285773..41291236+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q5FYS3_DAUCA); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525,GO:0005622 NbS00026709g0014.1 protein AED:0.21 eAED:0.21 QI:452|0.96|0.96|1|0.86|0.93|31|888|1090; (*GB) gi|350535206|ref|NP_001234182.1| (e_value=0.0) exportin 1 [Solanum lycopersicum];; (*SWP) sp|Q6P5F9|XPO1_MOUSE (e_value=0.0) Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1;; (*TAIR) AT5G17020.2 (e_value=0.0) | Symbols: XPO1A | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1060;; (*ITAG) Solyc03g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "; GO:0005049 NbC24504132g0002.1 protein AED:0.14 eAED:0.73 QI:0|0|0|1|1|1|2|0|74 NbS00046319g0008.1 protein AED:0.11 eAED:0.15 QI:312|0.63|0.66|1|0.36|0.33|12|242|1127; (*GB) gi|297736652|emb|CBI25523.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=3e-19) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc03g095250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49676759-49683096 transcript_region:SL2.40ch03:49676759..49683096- functional_description:"cDNA clone 001-032-H02 full insert sequence (Fragment) (AHRD V1 **-- B7E5B1_ORYSJ)"; NbS00046319g0007.1 protein AED:0.26 eAED:0.26 QI:184|0.62|0.66|1|0.62|0.66|9|731|534; (*GB) gi|297736651|emb|CBI25522.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54190.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:20061759-20063880 REVERSE LENGTH=467;; (*ITAG) Solyc03g095260.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49686853-49693458 transcript_region:SL2.40ch03:49686853..49693458- functional_description:"Conserved Plasmodium protein (AHRD V1 *-*- Q8I666_PLAF7); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00011537g0012.1 protein AED:0.04 eAED:0.04 QI:127|1|1|1|0.85|0.87|8|230|660; (*GB) gi|352091100|gb|AEQ61825.1| (e_value=0.0) flavodoxin family protein [Dimocarpus longan];; (*SWP) sp|Q8RXN5|TYW1_ARATH (e_value=0.0) tRNA wybutosine-synthesizing protein 1 homolog OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1;; (*TAIR) AT1G75200.1 (e_value=0.0) | Symbols: | flavodoxin family protein / radical SAM domain-containing protein | chr1:28220849-28223597 REVERSE LENGTH=647;; (*ITAG) Solyc04g080340.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62148519-62153295 transcript_region:SL2.40ch04:62148519..62153295- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"Wyosine base formation domain protein (AHRD V1 *--- D3TCK2_ACIB4); contains Interpro domain(s) IPR013917 Wyosine base formation "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbS00011537g0011.1 protein AED:0.05 eAED:0.05 QI:104|1|1|1|0.85|1|8|388|784; (*GB) gi|224065579|ref|XP_002301867.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LN50|PMTS_ARATH (e_value=0.0) Probable methyltransferase PMT28 OS=Arabidopsis thaliana GN=At1g19430 PE=1 SV=1;; (*TAIR) AT1G19430.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:6724669-6727533 REVERSE LENGTH=724;; (*ITAG) Solyc04g080360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62159805-62164799 transcript_region:SL2.40ch04:62159805..62164799- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00011537g0003.1 protein AED:0.37 eAED:0.39 QI:34|1|0.5|1|0|0|2|0|122 NbS00002087g0006.1 protein AED:0.07 eAED:0.09 QI:212|1|0.66|1|1|1|6|0|444; (*GB) gi|255541534|ref|XP_002511831.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q8RXK6|RH8_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1;; (*TAIR) AT4G00660.1 (e_value=0.0) | Symbols: RH8, ATRH8 | RNAhelicase-like 8 | chr4:274638-277438 FORWARD LENGTH=505;; (*ITAG) Solyc10g017530.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5410144-5419713 transcript_region:SL2.40ch10:5410144..5419713+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA Helicase (AHRD V1 **** Q7PDT0_PLAYO); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00033808g0009.1 protein AED:0.10 eAED:0.13 QI:356|0.84|0.71|1|0.76|0.57|14|0|1163; (*GB) gi|225427486|ref|XP_002263093.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264917 [Vitis vinifera];; (*SWP) sp|Q9C6S1|FH14_ARATH (e_value=0.0) Formin-like protein 14 OS=Arabidopsis thaliana GN=FH14 PE=3 SV=3;; (*TAIR) AT1G31810.1 (e_value=0.0) | Symbols: AFH14 | Formin Homology 14 | chr1:11399922-11405761 REVERSE LENGTH=1230;; (*ITAG) Solyc08g075670.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56967653-56969515 transcript_region:SL2.40ch08:56967653..56969515- functional_description:"Formin 2B (AHRD V1 **-- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00000371g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0|0.75|1|0.75|4|0|192; (*GB) gi|225431884|ref|XP_002276038.1| (e_value=1e-51) PREDICTED: uncharacterized protein LOC100241383 [Vitis vinifera];; (*TAIR) AT5G49350.2 (e_value=1e-40) | Symbols: | Glycine-rich protein family | chr5:20009834-20011095 REVERSE LENGTH=225;; (*ITAG) Solyc01g060260.2.1 (e_value=4e-95) genomic_reference:SL2.40ch01 gene_region:62793560-62795045 transcript_region:SL2.40ch01:62793560..62795045+ go_terms:GO:0008083 functional_description:"Unknown Protein (AHRD V1)"; GO:0008083 NbS00000371g0008.1 protein AED:0.26 eAED:0.26 QI:163|0.92|0.85|1|1|1|14|339|516; (*GB) gi|296083281|emb|CBI22917.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5PNU3|AMSH3_ARATH (e_value=0.0) AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2;; (*TAIR) AT4G16144.1 (e_value=0.0) | Symbols: AMSH3 | associated molecule with the SH3 domain of STAM 3 | chr4:9138053-9141422 REVERSE LENGTH=507;; (*ITAG) Solyc01g060280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62800092-62812738 transcript_region:SL2.40ch01:62800092..62812738+ go_terms:GO:0005515 functional_description:"STAM binding protein (AHRD V1 *--* B2W8T5_PYRTR); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00044037g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|0.66|1|1|3|0|236; (*GB) gi|196259694|dbj|BAG68655.1| (e_value=2e-149) jasmonate ZIM-domain protein 1 [Nicotiana tabacum];; (*SWP) sp|Q9LMA8|TI10A_ARATH (e_value=9e-43) Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1;; (*TAIR) AT1G19180.1 (e_value=7e-44) | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain protein 1 | chr1:6622312-6623271 FORWARD LENGTH=253;; (*ITAG) Solyc12g009220.1.1 (e_value=6e-95) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2502555-2504617 transcript_region:SL2.40ch12:2502555..2504617+ go_terms:GO:0005515 functional_description:"Jasmonate ZIM-domain protein 1 (AHRD V1 **-- A7XXZ0_SOLLC); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00044037g0005.1 protein AED:0.19 eAED:0.19 QI:0|1|0.9|1|1|1|10|357|359; (*GB) gi|6996560|emb|CAB75429.1| (e_value=0.0) oligouridylate binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=4e-61) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT3G14100.1 (e_value=1e-173) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4673027-4675950 FORWARD LENGTH=427;; (*ITAG) Solyc07g042180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:52516019-52522887 transcript_region:SL2.40ch07:52516019..52522887- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **** A8N215_COPC7); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00052566g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|196; (*GB) gi|255587874|ref|XP_002534424.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G06790.1 (e_value=6e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:2098088-2098717 REVERSE LENGTH=209;; (*ITAG) Solyc03g063550.1.1 (e_value=6e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:32246581-32247045 transcript_region:SL2.40ch03:32246581..32247045+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035259g0009.1 protein AED:0.02 eAED:0.02 QI:357|1|1|1|1|1|2|263|366; (*GB) gi|255571275|ref|XP_002526587.1| (e_value=2e-120) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G03210.1 (e_value=5e-107) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:740987-742093 FORWARD LENGTH=368;; (*ITAG) Solyc02g081230.2.1 (e_value=2e-166) genomic_reference:SL2.40ch02 gene_region:39841809-39845647 transcript_region:SL2.40ch02:39841809..39845647- functional_description:"Unknown Protein (AHRD V1)"; NbS00035259g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|359475763|ref|XP_003631752.1| (e_value=7e-95) PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-70) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30710.1 (e_value=4e-75) | Symbols: | FAD-binding Berberine family protein | chr1:10895280-10896875 FORWARD LENGTH=531;; (*ITAG) Solyc02g070090.1.1 (e_value=2e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34506045-34507649 transcript_region:SL2.40ch02:34506045..34507649- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFN2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00035259g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.66|1|1|3|0|213; (*GB) gi|147846526|emb|CAN81650.1| (e_value=4e-71) hypothetical protein VITISV_003752 [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-57) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20840.1 (e_value=3e-64) | Symbols: | FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539;; (*ITAG) Solyc02g070090.1.1 (e_value=5e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34506045-34507649 transcript_region:SL2.40ch02:34506045..34507649- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFN2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00000082g0007.1 protein AED:0.09 eAED:0.13 QI:0|0.33|0|1|0.33|0.25|4|0|336; (*GB) gi|225439627|ref|XP_002268412.1| (e_value=5e-150) PREDICTED: cationic peroxidase 1 [Vitis vinifera];; (*SWP) sp|A7NY33|PER4_VITVI (e_value=2e-109) Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1;; (*TAIR) AT5G05340.1 (e_value=2e-100) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc10g076210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58379010-58380144 transcript_region:SL2.40ch10:58379010..58380144- go_terms:GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00037026g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|1|1|2|0|447; (*GB) gi|3869088|dbj|BAA34348.1| (e_value=0.0) elongation factor-1 alpha [Nicotiana paniculata];; (*SWP) sp|P43643|EF1A_TOBAC (e_value=0.0) Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00032139g0014.1 protein AED:0.19 eAED:0.19 QI:111|1|1|1|1|1|3|940|104; (*GB) gi|147853777|emb|CAN83819.1| (e_value=4e-18) hypothetical protein VITISV_030951 [Vitis vinifera];; (*SWP) sp|O80439|RR31_ARATH (e_value=8e-17) 30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1;; (*TAIR) AT2G38140.1 (e_value=6e-18) | Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980948-15981459 FORWARD LENGTH=118;; (*ITAG) Solyc05g052710.2.1 (e_value=5e-26) genomic_reference:SL2.40ch05 gene_region:62055840-62057432 transcript_region:SL2.40ch05:62055840..62057432+ functional_description:"30S ribosomal protein S31, chloroplastic (AHRD V1 *-*- RR31_ARATH)"; NbS00032139g0010.1 protein AED:0.06 eAED:0.11 QI:0|0|0|1|1|1|2|0|160; (*GB) gi|225448379|ref|XP_002269271.1| (e_value=6e-76) PREDICTED: pleckstrin homology domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q9ST43|PH1_ARATH (e_value=2e-64) Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2;; (*TAIR) AT5G05710.1 (e_value=2e-72) | Symbols: | Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144;; (*ITAG) Solyc05g052720.1.1 (e_value=6e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62059708-62060151 transcript_region:SL2.40ch05:62059708..62060151- go_terms:GO:0035091 functional_description:"Pleckstrin homology domain containing family A (Phosphoinositide binding specific) member 1 (AHRD V1 **-* Q0IIA5_BOVIN); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0035091 NbS00032139g0019.1 protein AED:0.41 eAED:0.66 QI:0|0|0|1|0|1|2|0|94; (*GB) gi|359486514|ref|XP_002271028.2| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100255315 [Vitis vinifera];; (*TAIR) AT1G07280.3 (e_value=6e-15) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2238505-2240991 FORWARD LENGTH=552;; (*ITAG) Solyc05g052700.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:62051692-62054811 transcript_region:SL2.40ch05:62051692..62054811+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- Q7MVN6_PORGI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00032139g0016.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|0|0|2|0|564; (*GB) gi|359480765|ref|XP_002273522.2| (e_value=0.0) PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8GXR9|DHNA_ARATH (e_value=0.0) NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2;; (*TAIR) AT5G08740.1 (e_value=0.0) | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848752-2851323 REVERSE LENGTH=519;; (*ITAG) Solyc03g043750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11261685-11271541 transcript_region:SL2.40ch03:11261685..11271541+ go_terms:GO:0003954 functional_description:"FAD-dependent pyridine nucleotide-disulphide oxidoreductase (AHRD V1 ***- A0YND6_LYNSP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0003954 NbS00032139g0018.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|297745926|emb|CBI15982.3| (e_value=1e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G47080.1 (e_value=2e-20) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17338415-17340129 REVERSE LENGTH=515;; (*ITAG) Solyc05g052700.2.1 (e_value=7e-38) genomic_reference:SL2.40ch05 gene_region:62051692-62054811 transcript_region:SL2.40ch05:62051692..62054811+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- Q7MVN6_PORGI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011218g0003.1 protein AED:0.06 eAED:0.13 QI:286|1|0.5|1|0|0|2|0|1121; (*GB) gi|224117970|ref|XP_002317701.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SY59|NFXL1_ARATH (e_value=0.0) NF-X1-type zinc finger protein NFXL1 OS=Arabidopsis thaliana GN=NFXL1 PE=2 SV=1;; (*TAIR) AT1G10170.1 (e_value=0.0) | Symbols: ATNFXL1, NFXL1 | NF-X-like 1 | chr1:3333925-3337491 REVERSE LENGTH=1188;; (*ITAG) Solyc03g118420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61351927-61355718 transcript_region:SL2.40ch03:61351927..61355718+ go_terms:GO:0005515 functional_description:"NF-X1 finger transcription factor (AHRD V1 **-- C5GCI1_AJEDR); contains Interpro domain(s) IPR000967 Zinc finger, NF-X1-type "; GO:0005515 NbS00011218g0012.1 protein AED:0.13 eAED:0.13 QI:299|1|1|1|1|1|4|147|140; (*GB) gi|350536815|ref|NP_001234522.1| (e_value=5e-70) acyl carrier protein [Solanum lycopersicum];; (*SWP) sp|P93092|ACP1_CASGL (e_value=3e-39) Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1;; (*TAIR) AT4G25050.1 (e_value=1e-32) | Symbols: ACP4 | acyl carrier protein 4 | chr4:12870178-12871024 FORWARD LENGTH=137;; (*ITAG) Solyc03g118410.2.1 (e_value=9e-73) genomic_reference:SL2.40ch03 gene_region:61347902-61349585 transcript_region:SL2.40ch03:61347902..61349585- go_terms:GO:0006633,GO:0031177,GO:0048037,GO:0000036 functional_description:"Acyl carrier protein (AHRD V1 ***- Q672Q9_SOLLC); contains Interpro domain(s) IPR003231 Acyl carrier protein (ACP) "; GO:0006633,GO:0031177,GO:0048037,GO:0000036 NbS00011218g0002.1 protein AED:0.21 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-42) hypothetical protein [Nicotiana tabacum]; NbS00000146g0008.1 protein AED:0.25 eAED:0.27 QI:32|1|0.66|1|0.8|0.66|6|485|301; (*GB) gi|359475440|ref|XP_002266866.2| (e_value=5e-111) PREDICTED: uncharacterized protein LOC100261713 [Vitis vinifera];; (*SWP) sp|Q8VWK4|TRB1_ARATH (e_value=8e-95) Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1 PE=1 SV=1;; (*TAIR) AT1G49950.1 (e_value=6e-96) | Symbols: TRB1, ATTRB1 | telomere repeat binding factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300;; (*ITAG) Solyc01g106940.2.1 (e_value=4e-133) genomic_reference:SL2.40ch01 gene_region:86382163-86399044 transcript_region:SL2.40ch01:86382163..86399044+ go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Single myb histone 4 (Fragment) (AHRD V1 *--- A6MZD9_ORYSI); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00000146g0002.1 protein AED:0.32 eAED:0.32 QI:117|0.76|0.88|0.94|0.82|0.77|18|508|540; (*GB) gi|296083035|emb|CBI22439.3| (e_value=5e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G14680.2 (e_value=2e-97) | Symbols: MEE13 | myosin heavy chain-related | chr2:6278256-6283766 FORWARD LENGTH=652;; (*ITAG) Solyc01g106950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86400110-86411982 transcript_region:SL2.40ch01:86400110..86411982+ functional_description:"Os03g0431932 protein (Fragment) (AHRD V1 *-*- C7J0D6_ORYSJ)"; NbS00030104g0007.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|4|0|379; (*GB) gi|359487032|ref|XP_002265178.2| (e_value=3e-138) PREDICTED: nucleolar GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=4e-115) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=3e-116) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc01g081010.2.1 (e_value=4e-168) genomic_reference:SL2.40ch01 gene_region:72829845-72833676 transcript_region:SL2.40ch01:72829845..72833676- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00030104g0008.1 protein AED:0.32 eAED:0.32 QI:0|0.75|0.8|1|1|1|5|0|370; (*GB) gi|359478758|ref|XP_003632166.1| (e_value=2e-156) PREDICTED: lysine-specific demethylase 8-like [Vitis vinifera];; (*SWP) sp|B5XF11|KDM8_SALSA (e_value=6e-55) Lysine-specific demethylase 8 OS=Salmo salar GN=kdm8 PE=2 SV=1;; (*TAIR) AT3G20810.1 (e_value=5e-153) | Symbols: JMJD5 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7275814-7278144 FORWARD LENGTH=418;; (*ITAG) Solyc01g006680.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1260327-1264553 transcript_region:SL2.40ch01:1260327..1264553- go_terms:GO:0003700 functional_description:"Transcription factor jumonji jmjC domain protein (AHRD V1 *-** D5NKF9_9BURK); contains Interpro domain(s) IPR003347 Transcription factor jumonji/aspartyl beta-hydroxylase "; GO:0003700 NbS00030104g0002.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|247; (*GB) gi|255544896|ref|XP_002513509.1| (e_value=7e-153) nucleolar GTP-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=3e-146) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=2e-147) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc01g081010.2.1 (e_value=1e-157) genomic_reference:SL2.40ch01 gene_region:72829845-72833676 transcript_region:SL2.40ch01:72829845..72833676- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00045532g0003.1 protein AED:0.60 eAED:0.67 QI:64|0.5|0.33|1|0|0.66|3|0|39 NbS00010039g0006.1 protein AED:0.21 eAED:0.21 QI:34|0.83|0.71|0.85|0.83|0.85|7|0|174; (*GB) gi|729051|sp|P41210.1|CATR_ATRNU (e_value=3e-88) RecName: Full=Caltractin; AltName: Full=Centrin;; (*SWP) sp|P41210|CATR_ATRNU (e_value=8e-90) Caltractin OS=Atriplex nummularia PE=2 SV=1;; (*TAIR) AT3G50360.1 (e_value=4e-89) | Symbols: ATCEN2, CEN1, CEN2 | centrin2 | chr3:18674421-18675502 FORWARD LENGTH=169;; (*ITAG) Solyc02g090810.2.1 (e_value=8e-109) genomic_reference:SL2.40ch02 gene_region:46876372-46878474 transcript_region:SL2.40ch02:46876372..46878474- go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 ***- Q1WLX8_CHLIN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00029039g0007.1 protein AED:0.14 eAED:0.18 QI:0|0|0|0.66|0.5|0.33|3|0|420; (*GB) gi|225446335|ref|XP_002273904.1| (e_value=1e-109) PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=3e-88) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.1 (e_value=2e-89) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926110-8927722 FORWARD LENGTH=490;; (*ITAG) Solyc07g054090.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59816862-59821512 transcript_region:SL2.40ch07:59816862..59821512- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029039g0006.1 protein AED:0.40 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|95; (*ITAG) Solyc07g054090.2.1 (e_value=1e-22) genomic_reference:SL2.40ch07 gene_region:59816862-59821512 transcript_region:SL2.40ch07:59816862..59821512- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001573g0032.1 protein AED:0.30 eAED:0.31 QI:0|1|0.71|1|0.83|1|7|0|375; (*GB) gi|225470319|ref|XP_002267811.1| (e_value=7e-178) PREDICTED: maspardin [Vitis vinifera];; (*SWP) sp|Q6PC62|SPG21_DANRE (e_value=7e-66) Maspardin OS=Danio rerio GN=spg21 PE=2 SV=1;; (*TAIR) AT4G12230.1 (e_value=2e-161) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:7284645-7287348 FORWARD LENGTH=392;; (*ITAG) Solyc08g079450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60133637-60141950 transcript_region:SL2.40ch08:60133637..60141950+ go_terms:GO:0042609 functional_description:"Maspardin (AHRD V1 ***- B6TRT5_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0042609 NbS00001573g0012.1 protein AED:0.24 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|151; (*GB) gi|57013890|ref|YP_173364.1| (e_value=4e-19) hypothetical protein NitaMp016 [Nicotiana tabacum]; NbS00001573g0006.1 protein AED:0.34 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|356496364|ref|XP_003517038.1| (e_value=3e-64) PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max];; (*SWP) sp|Q9STI6|GAE5_ARATH (e_value=3e-65) UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1;; (*TAIR) AT4G12250.1 (e_value=3e-66) | Symbols: GAE5 | UDP-D-glucuronate 4-epimerase 5 | chr4:7289538-7290848 REVERSE LENGTH=436;; (*ITAG) Solyc08g079440.1.1 (e_value=6e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60129988-60131325 transcript_region:SL2.40ch08:60129988..60131325+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00001573g0001.1 protein AED:0.33 eAED:0.40 QI:36|0|0|0.66|1|1|3|0|151; (*GB) gi|147846594|emb|CAN81642.1| (e_value=3e-26) hypothetical protein VITISV_036426 [Vitis vinifera];; (*SWP) sp|O64636|C76C1_ARATH (e_value=6e-13) Cytochrome P450 76C1 OS=Arabidopsis thaliana GN=CYP76C1 PE=2 SV=1;; (*TAIR) AT4G12320.1 (e_value=8e-19) | Symbols: CYP706A6 | cytochrome P450, family 706, subfamily A, polypeptide 6 | chr4:7314939-7316647 REVERSE LENGTH=518;; (*ITAG) Solyc08g079420.2.1 (e_value=6e-28) genomic_reference:SL2.40ch08 gene_region:60118494-60120898 transcript_region:SL2.40ch08:60118494..60120898+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001573g0029.1 protein AED:0.70 eAED:0.70 QI:0|0|0|0.5|0|0.5|2|0|136; (*GB) gi|225200233|ref|YP_002720024.1| (e_value=3e-23) Ycf1 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=1e-24) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021260.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13395518-13396326 transcript_region:SL2.40ch11:13395518..13396326- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- D7P347_SYZCU)"; NbS00001573g0033.1 protein AED:0.07 eAED:0.07 QI:0|0|0.2|1|0.25|0.4|5|460|636; (*GB) gi|225426753|ref|XP_002275872.1| (e_value=0.0) PREDICTED: primary amine oxidase [Vitis vinifera];; (*SWP) sp|Q8H1H9|AMO_ARATH (e_value=0.0) Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1;; (*TAIR) AT4G12290.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr4:7304434-7306973 FORWARD LENGTH=741;; (*ITAG) Solyc08g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60120528-60124693 transcript_region:SL2.40ch08:60120528..60124693- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RBR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00001573g0005.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0.25|1|1|1|4|0|215; (*GB) gi|6630454|gb|AAF19542.1|AC007190_10 (e_value=6e-91) F23N19.18 [Arabidopsis thaliana];; (*SWP) sp|Q8H1H9|AMO_ARATH (e_value=4e-96) Primary amine oxidase OS=Arabidopsis thaliana GN=At1g62810 PE=2 SV=1;; (*TAIR) AT1G62810.1 (e_value=3e-97) | Symbols: | Copper amine oxidase family protein | chr1:23258253-23261772 REVERSE LENGTH=712;; (*ITAG) Solyc08g079430.2.1 (e_value=1e-85) genomic_reference:SL2.40ch08 gene_region:60120528-60124693 transcript_region:SL2.40ch08:60120528..60124693- go_terms:GO:0055114 functional_description:"Primary amine oxidase (AHRD V1 ***- B9RBR2_RICCO); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0055114 NbS00001573g0022.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|273; (*GB) gi|283488499|gb|ADB24771.1| (e_value=1e-140) UDP-D-glucuronic acid 4-epimerase [Gossypium hirsutum];; (*SWP) sp|O22141|GAE4_ARATH (e_value=6e-141) UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1;; (*TAIR) AT2G45310.1 (e_value=5e-142) | Symbols: GAE4 | UDP-D-glucuronate 4-epimerase 4 | chr2:18682652-18683965 FORWARD LENGTH=437;; (*ITAG) Solyc08g079440.1.1 (e_value=5e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60129988-60131325 transcript_region:SL2.40ch08:60129988..60131325+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00001573g0027.1 protein AED:0.38 eAED:0.53 QI:0|0|0|0.75|0|0|4|0|246; (*GB) gi|78102606|ref|YP_358745.1| (e_value=3e-46) hypothetical protein NisyCp102 [Nicotiana sylvestris];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-48) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=2e-16) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021290.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13397298-13397884 transcript_region:SL2.40ch11:13397298..13397884- functional_description:"Ycf1 (Fragment) (AHRD V1 ***- A2T912_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00001573g0026.1 protein AED:0.17 eAED:0.24 QI:51|0|0|1|0|0|3|0|197; (*GB) gi|335059682|gb|AEH27115.1| (e_value=2e-60) ribosomal protein S3 [Petunia axillaris];; (*SWP) sp|Q04716|RT03_PETHY (e_value=1e-61) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=6e-35) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc02g021370.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:13275574-13279883 transcript_region:SL2.40ch02:13275574..13279883- go_terms:GO:0005840,GO:0016020 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- D3GFD5_9MAGN); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840,GO:0016020 NbS00001573g0030.1 protein AED:0.43 eAED:0.49 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|225200233|ref|YP_002720024.1| (e_value=3e-40) Ycf1 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-42) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=4e-11) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc02g011820.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4988509-4989027 transcript_region:SL2.40ch02:4988509..4989027- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- B1NWK7_MANES)"; NbC26310601g0005.1 protein AED:0.05 eAED:0.05 QI:114|1|1|1|1|1|2|218|197; (*GB) gi|81176340|gb|ABB59463.1| (e_value=4e-27) histone H1F [Nicotiana tabacum];; (*SWP) sp|P08283|H1_PEA (e_value=2e-18) Histone H1 OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT1G06760.1 (e_value=1e-17) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr1:2076687-2077616 REVERSE LENGTH=274;; (*ITAG) Solyc09g083380.2.1 (e_value=5e-25) genomic_reference:SL2.40ch09 gene_region:64424218-64425294 transcript_region:SL2.40ch09:64424218..64425294- go_terms:GO:0005634,GO:0000786 functional_description:"Histone H1 (AHRD V1 *-*- B6TC95_MAIZE); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbC26310601g0006.1 protein AED:0.05 eAED:0.05 QI:114|1|1|1|1|1|2|218|197; (*GB) gi|81176340|gb|ABB59463.1| (e_value=4e-27) histone H1F [Nicotiana tabacum];; (*SWP) sp|P08283|H1_PEA (e_value=2e-18) Histone H1 OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT1G06760.1 (e_value=1e-17) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr1:2076687-2077616 REVERSE LENGTH=274;; (*ITAG) Solyc09g083380.2.1 (e_value=5e-25) genomic_reference:SL2.40ch09 gene_region:64424218-64425294 transcript_region:SL2.40ch09:64424218..64425294- go_terms:GO:0005634,GO:0000786 functional_description:"Histone H1 (AHRD V1 *-*- B6TC95_MAIZE); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0000786 NbS00048831g0003.1 protein AED:0.24 eAED:0.24 QI:82|0.71|0.87|1|0.57|0.62|8|494|398; (*GB) gi|359497736|ref|XP_002274965.2| (e_value=4e-176) PREDICTED: uncharacterized sodium-dependent transporter yocS-like, partial [Vitis vinifera];; (*SWP) sp|O34524|YOCS_BACSU (e_value=1e-30) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT4G22840.1 (e_value=3e-158) | Symbols: | Sodium Bile acid symporter family | chr4:11991636-11993676 REVERSE LENGTH=409;; (*ITAG) Solyc08g007590.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2130515-2136049 transcript_region:SL2.40ch08:2130515..2136049- go_terms:GO:0008508 functional_description:"Bile acid sodium symporter family protein (AHRD V1 **** D7MDZ7_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0008508 NbC26240605g0002.1 protein AED:0.33 eAED:0.47 QI:40|1|0|1|1|0.5|2|0|58; (*GB) gi|30685060|ref|NP_849678.1| (e_value=1e-33) ubiquitin-conjugating enzyme E2 36 [Arabidopsis thaliana];; (*SWP) sp|Q9FZ48|UBC36_ARATH (e_value=7e-35) Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1;; (*TAIR) AT1G16890.1 (e_value=3e-36) | Symbols: UBC36, UBC13B | ubiquitin-conjugating enzyme 36 | chr1:5776550-5777903 REVERSE LENGTH=120;; (*ITAG) Solyc10g007260.2.1 (e_value=4e-36) genomic_reference:SL2.40ch10 gene_region:1673007-1678261 transcript_region:SL2.40ch10:1673007..1678261- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 N (AHRD V1 ***- B5XC59_SALSA); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00036529g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|247; (*GB) gi|224130214|ref|XP_002328682.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT1G13360.1 (e_value=8e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc06g069150.1.1 (e_value=9e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39319761-39320498 transcript_region:SL2.40ch06:39319761..39320498+ functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 *-*- Q9LUA5_ARATH)"; NbS00003977g0104.1 protein AED:0.13 eAED:0.14 QI:1050|0.66|0.85|1|0.66|0.57|7|362|182 NbS00003977g0106.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|423 NbS00003977g0119.1 protein AED:0.18 eAED:0.18 QI:88|0.8|0.72|1|0.5|0.63|11|270|325 NbS00003977g0120.1 protein AED:0.28 eAED:0.28 QI:88|0.72|0.41|0.91|0.54|0.66|12|0|453 NbS00003977g0117.1 protein AED:0.32 eAED:0.32 QI:0|0|0.33|1|0.5|0.66|3|255|235 NbS00012882g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.8|1|0.75|0.6|5|737|682; (*GB) gi|225457188|ref|XP_002280600.1| (e_value=0.0) PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Vitis vinifera];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=2e-43) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT5G62580.1 (e_value=2e-122) | Symbols: | ARM repeat superfamily protein | chr5:25120010-25122259 FORWARD LENGTH=615;; (*ITAG) Solyc03g113680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57797860-57801879 transcript_region:SL2.40ch03:57797860..57801879- go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 **-- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00005819g0015.1 protein AED:0.49 eAED:0.49 QI:6|0|0|0.66|0.5|0.33|3|114|32 NbS00005819g0014.1 protein AED:0.13 eAED:0.13 QI:157|0.95|0.91|1|0.90|0.86|23|0|1062; (*GB) gi|297746163|emb|CBI16219.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=0.0) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT3G45850.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc06g075580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43344331-43351355 transcript_region:SL2.40ch06:43344331..43351355- go_terms:GO:0008574 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574 NbS00005819g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.7|0.45|1|0.5|0.54|11|0|633; (*GB) gi|109631188|gb|ABG35770.1| (e_value=0.0) NOX1 [Striga asiatica];; (*SWP) sp|Q9FJD6|RBOHH_ARATH (e_value=0.0) Putative respiratory burst oxidase homolog protein H OS=Arabidopsis thaliana GN=RBOHH PE=3 SV=1;; (*TAIR) AT5G60010.1 (e_value=0.0) | Symbols: | ferric reductase-like transmembrane component family protein | chr5:24160456-24164755 FORWARD LENGTH=886;; (*ITAG) Solyc06g075570.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43338737-43343040 transcript_region:SL2.40ch06:43338737..43343040- go_terms:GO:0016174,GO:0016175 functional_description:"Respiratory burst oxidase protein A (AHRD V1 **** Q0MRQ8_MAIZE); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174,GO:0016175 NbS00005819g0013.1 protein AED:0.53 eAED:0.53 QI:0|0|0|1|0|0|2|0|85; (*GB) gi|356566490|ref|XP_003551464.1| (e_value=6e-34) PREDICTED: putative respiratory burst oxidase homolog protein H-like [Glycine max];; (*SWP) sp|Q9LZU9|RBOHJ_ARATH (e_value=5e-33) Putative respiratory burst oxidase homolog protein J OS=Arabidopsis thaliana GN=RBOHJ PE=3 SV=2;; (*TAIR) AT3G45810.1 (e_value=4e-34) | Symbols: | ferric reductase-like transmembrane component family protein | chr3:16832883-16837569 REVERSE LENGTH=912;; (*ITAG) Solyc06g075570.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:43338737-43343040 transcript_region:SL2.40ch06:43338737..43343040- go_terms:GO:0016174,GO:0016175 functional_description:"Respiratory burst oxidase protein A (AHRD V1 **** Q0MRQ8_MAIZE); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174,GO:0016175 NbS00021214g0007.1 protein AED:0.43 eAED:0.58 QI:0|0.6|0.33|1|0.4|1|6|0|198; (*GB) gi|350538171|ref|NP_001234330.1| (e_value=1e-99) uncharacterized LOC544127 [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-83) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=3e-84) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc10g083610.1.1 (e_value=3e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021214g0008.1 protein AED:0.54 eAED:0.63 QI:0|0.33|0.25|0.75|0|0|4|0|96; (*GB) gi|45239444|gb|AAS55707.1| (e_value=4e-44) CTR1 [Nicotiana benthamiana];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=4e-22) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT5G03730.1 (e_value=3e-23) | Symbols: CTR1, SIS1, AtCTR1 | Protein kinase superfamily protein | chr5:974958-979660 REVERSE LENGTH=821;; (*ITAG) Solyc10g083610.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00021214g0009.1 protein AED:0.16 eAED:0.18 QI:6|0.5|0.57|1|0.5|0.57|7|511|277; (*GB) gi|379067353|gb|AFC90090.1| (e_value=3e-155) brix domain-containing protein [Nicotiana benthamiana];; (*SWP) sp|Q9AWM9|RPF2_ORYSJ (e_value=3e-73) Ribosome production factor 2 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1;; (*TAIR) AT3G23620.1 (e_value=1e-72) | Symbols: | Ribosomal RNA processing Brix domain protein | chr3:8480147-8481873 FORWARD LENGTH=314;; (*ITAG) Solyc10g083600.1.1 (e_value=7e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62706418-62710849 transcript_region:SL2.40ch10:62706418..62710849+ go_terms:GO:0008097 functional_description:"Ribosome production factor 2 homolog (AHRD V1 **-- RPF2_ORYSJ); contains Interpro domain(s) IPR007109 Brix domain "; GO:0008097 NbS00004368g0011.1 protein AED:0.25 eAED:0.25 QI:68|1|1|1|0.83|0.71|7|231|218; (*GB) gi|297734533|emb|CBI16584.3| (e_value=1e-90) unnamed protein product [Vitis vinifera];; (*SWP) sp|A7MJR8|RUVX_CROS8 (e_value=3e-14) Putative Holliday junction resolvase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=ESA_00393 PE=3 SV=1;; (*TAIR) AT1G12244.1 (e_value=4e-76) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:4157719-4158893 FORWARD LENGTH=254;; (*ITAG) Solyc01g090880.2.1 (e_value=8e-139) genomic_reference:SL2.40ch01 gene_region:76350870-76353734 transcript_region:SL2.40ch01:76350870..76353734- go_terms:GO:0003676,GO:0005737,GO:0006139 functional_description:"Holliday junction resolvase (AHRD V1 ***- B6TEN1_MAIZE); contains Interpro domain(s) IPR005227 Resolvase, holliday junction-type, YqgF-like "; GO:0003676,GO:0005737,GO:0006139 NbS00004368g0015.1 protein AED:0.21 eAED:0.22 QI:0|0.73|0.65|1|0.47|0.55|20|0|1617; (*GB) gi|224129926|ref|XP_002320705.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6PB75|PAPD7_MOUSE (e_value=3e-24) DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1;; (*TAIR) AT4G00060.1 (e_value=0.0) | Symbols: MEE44 | Nucleotidyltransferase family protein | chr4:21437-27996 FORWARD LENGTH=1481;; (*ITAG) Solyc01g090860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76330161-76348155 transcript_region:SL2.40ch01:76330161..76348155+ go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase protein 1 (AHRD V1 *--- TRF5_YEAST); contains Interpro domain(s) IPR002934 Nucleotidyltransferase "; GO:0016779 NbS00004368g0013.1 protein AED:0.26 eAED:0.28 QI:12|0.5|0.33|1|0.5|0.66|3|0|657; (*ITAG) Solyc01g090850.2.1 (e_value=6e-128) genomic_reference:SL2.40ch01 gene_region:76318364-76327292 transcript_region:SL2.40ch01:76318364..76327292+ go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00013534g0009.1 protein AED:0.05 eAED:0.05 QI:0|0.6|0|0.83|0.6|0.5|6|0|636; (*GB) gi|255552710|ref|XP_002517398.1| (e_value=2e-88) hypothetical protein RCOM_0852460 [Ricinus communis];; (*TAIR) AT5G14930.2 (e_value=7e-56) | Symbols: SAG101 | senescence-associated gene 101 | chr5:4828754-4830769 FORWARD LENGTH=537;; (*ITAG) Solyc02g069400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33881965-33884949 transcript_region:SL2.40ch02:33881965..33884949+ go_terms:GO:0005515,GO:0004871 functional_description:"Enhanced disease susceptibility 1 (Fragment) (AHRD V1 *--- B2BDU4_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0004871 NbS00013534g0010.1 protein AED:0.04 eAED:0.07 QI:0|0|0|1|1|1|4|0|197; (*GB) gi|356532993|ref|XP_003535053.1| (e_value=7e-67) PREDICTED: uncharacterized protein LOC100792632 [Glycine max];; (*TAIR) AT5G45170.1 (e_value=9e-67) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18270555-18273129 REVERSE LENGTH=372;; (*ITAG) Solyc02g069410.2.1 (e_value=2e-94) genomic_reference:SL2.40ch02 gene_region:33885107-33893316 transcript_region:SL2.40ch02:33885107..33893316- functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 *-*- Q10I42_ORYSJ)"; NbS00029054g0008.1 protein AED:0.27 eAED:0.34 QI:152|0.25|0.4|1|1|1|5|0|328; (*GB) gi|351713115|gb|EHB16034.1| (e_value=1e-159) Tubulin beta-7 chain [Heterocephalus glaber];; (*SWP) sp|P29516|TBB8_ARATH (e_value=4e-151) Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2;; (*TAIR) AT5G23860.2 (e_value=3e-152) | Symbols: TUB8 | tubulin beta 8 | chr5:8042962-8044528 FORWARD LENGTH=449;; (*ITAG) Solyc06g035970.2.1 (e_value=3e-151) genomic_reference:SL2.40ch06 gene_region:22016405-22019376 transcript_region:SL2.40ch06:22016405..22019376- go_terms:GO:0005200 functional_description:"Tubulin beta chain (AHRD V1 ***- B9GKJ5_POPTR); contains Interpro domain(s) IPR002453 Beta tubulin "; GO:0005200 NbS00029054g0007.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|1|4|0|523; (*GB) gi|16797908|gb|AAL29212.1|AF354454_1 (e_value=0.0) putative acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SMT7|4CLLA_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1;; (*TAIR) AT3G48990.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr3:18159031-18161294 REVERSE LENGTH=514;; (*ITAG) Solyc03g025720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7514751-7518597 transcript_region:SL2.40ch03:7514751..7518597+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase (AHRD V1 **** C3JN12_RHOER); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00004185g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.25|0.2|0.8|0.5|0.4|5|0|401; (*GB) gi|13785209|emb|CAC37356.1| (e_value=1e-169) putative membrane protein [Solanum tuberosum];; (*SWP) sp|Q94BT2|AIR12_ARATH (e_value=7e-20) Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3;; (*TAIR) AT5G47530.1 (e_value=3e-118) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc05g041910.2.1 (e_value=5e-175) genomic_reference:SL2.40ch05 gene_region:53328283-53331147 transcript_region:SL2.40ch05:53328283..53331147+ functional_description:"Membrane protein (AHRD V1 **-- B6U5U8_MAIZE); contains Interpro domain(s) IPR017214 Uncharacterised conserved protein UCP037471 "; NbS00034343g0004.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|565; (*GB) gi|225434642|ref|XP_002279786.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera];; (*TAIR) AT2G29670.1 (e_value=6e-165) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12682309-12684745 REVERSE LENGTH=536;; (*ITAG) Solyc06g076850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44132035-44135117 transcript_region:SL2.40ch06:44132035..44135117- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7LLC0_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00005958g0001.1 protein AED:0.20 eAED:0.20 QI:9|0.66|0.75|1|1|1|4|0|236; (*GB) gi|82400118|gb|ABB72798.1| (e_value=2e-148) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=8e-150) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G07090.2 (e_value=7e-144) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:2202783-2203805 FORWARD LENGTH=244;; (*ITAG) Solyc02g070360.2.1 (e_value=3e-152) genomic_reference:SL2.40ch02 gene_region:34691346-34693734 transcript_region:SL2.40ch02:34691346..34693734+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00005958g0010.1 protein AED:0.09 eAED:0.09 QI:382|1|1|1|1|1|7|363|677; (*GB) gi|225443956|ref|XP_002272405.1| (e_value=0.0) PREDICTED: probable beta-1,3-galactosyltransferase 20 [Vitis vinifera];; (*SWP) sp|A7XDQ9|B3GTK_ARATH (e_value=0.0) Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1;; (*TAIR) AT4G21060.2 (e_value=0.0) | Symbols: | Galactosyltransferase family protein | chr4:11242003-11244860 FORWARD LENGTH=684;; (*ITAG) Solyc02g070400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34706503-34714522 transcript_region:SL2.40ch02:34706503..34714522- go_terms:GO:0046872,GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0046872,GO:0016020,GO:0005529 NbS00005958g0009.1 protein AED:0.16 eAED:0.16 QI:33|1|0.90|1|0.8|0.72|11|1538|560; (*GB) gi|365222882|gb|AEW69793.1| (e_value=0.0) Hop-interacting protein THI030 [Solanum lycopersicum];; (*TAIR) AT2G34640.1 (e_value=0.0) | Symbols: PTAC12, HMR | plastid transcriptionally active 12 | chr2:14582061-14584345 REVERSE LENGTH=527;; (*ITAG) Solyc02g070390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34698168-34705261 transcript_region:SL2.40ch02:34698168..34705261- go_terms:GO:0023034 functional_description:"PTAC12 (AHRD V1 ***- D7LH29_ARALY)"; GO:0023034 NbS00038733g0001.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|64 NbS00002832g0007.1 protein AED:0.62 eAED:0.62 QI:0|0|0|1|1|1|2|0|68 NbS00002832g0008.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|3|0|141 NbS00002832g0006.1 protein AED:0.37 eAED:0.42 QI:0|0|0|1|0|0|2|0|112 NbS00012993g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|147784488|emb|CAN74950.1| (e_value=3e-21) hypothetical protein VITISV_000265 [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=7e-16) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=5e-17) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc07g016110.1.1 (e_value=6e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:6281917-6282672 transcript_region:SL2.40ch07:6281917..6282672- go_terms:GO:0008270 functional_description:"RING finger protein 6 (AHRD V1 *-*- RNF6_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012993g0003.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|80 NbS00012993g0009.1 protein AED:0.25 eAED:0.25 QI:204|0.33|0.5|1|0.66|0.75|4|315|465; (*GB) gi|350538445|ref|NP_001234855.1| (e_value=0.0) hexose transporter 3 [Solanum lycopersicum];; (*SWP) sp|O04249|STP7_ARATH (e_value=0.0) Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1;; (*TAIR) AT4G02050.1 (e_value=0.0) | Symbols: STP7 | sugar transporter protein 7 | chr4:898387-900095 REVERSE LENGTH=513;; (*ITAG) Solyc07g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1783320-1787328 transcript_region:SL2.40ch07:1783320..1787328- go_terms:GO:0008506 functional_description:"Solute carrier family 2, facilitated glucose transporter member 5 (AHRD V1 ***- GTR5_RAT); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0008506 NbS00019868g0010.1 protein AED:0.37 eAED:0.42 QI:0|0.42|0.62|1|0.57|0.62|8|144|294; (*GB) gi|111183161|gb|ABH07898.1| (e_value=3e-102) leucine-rich repeat family protein [Solanum lycopersicum];; (*TAIR) AT1G28340.1 (e_value=8e-85) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc03g006330.2.1 (e_value=9e-114) genomic_reference:SL2.40ch03 gene_region:927641-933562 transcript_region:SL2.40ch03:927641..933562- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00019868g0012.1 protein AED:0.42 eAED:0.51 QI:0|0|0|1|0|0.33|3|0|199; (*GB) gi|111183161|gb|ABH07898.1| (e_value=1e-49) leucine-rich repeat family protein [Solanum lycopersicum];; (*TAIR) AT1G28340.1 (e_value=3e-40) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc03g006330.2.1 (e_value=2e-59) genomic_reference:SL2.40ch03 gene_region:927641-933562 transcript_region:SL2.40ch03:927641..933562- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00019868g0011.1 protein AED:0.47 eAED:0.64 QI:0|0|0|1|0|0|2|0|78; (*ITAG) Solyc03g006330.2.1 (e_value=6e-18) genomic_reference:SL2.40ch03 gene_region:927641-933562 transcript_region:SL2.40ch03:927641..933562- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00042387g0008.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.6|1|0.5|0.4|5|0|775; (*GB) gi|225465113|ref|XP_002270446.1| (e_value=0.0) PREDICTED: putative phospholipid-transporting ATPase 5-like [Vitis vinifera];; (*SWP) sp|Q9SGG3|ALA5_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 5 OS=Arabidopsis thaliana GN=ALA5 PE=2 SV=1;; (*TAIR) AT1G72700.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:27366910-27371491 FORWARD LENGTH=1228;; (*ITAG) Solyc02g069420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33898194-33901198 transcript_region:SL2.40ch02:33898194..33901198+ go_terms:GO:0005516,GO:0004012 functional_description:"Phospholipid-translocating P-type ATPase flippase family protein (AHRD V1 **** A2DBI9_TRIVA); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0005516,GO:0004012 NbS00019970g0003.1 protein AED:0.23 eAED:0.23 QI:153|1|0.75|1|1|1|4|0|458; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=0.0) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92980|APR3_ARATH (e_value=0.0) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2;; (*TAIR) AT4G21990.1 (e_value=0.0) | Symbols: APR3, PRH-26, PRH26, ATAPR3 | APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458;; (*ITAG) Solyc02g080640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00021851g0003.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|0|438; (*GB) gi|357933559|dbj|BAL15046.1| (e_value=0.0) glutamate receptor 1.1 [Solanum lycopersicum];; (*SWP) sp|O04660|GLR21_ARATH (e_value=3e-48) Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2;; (*TAIR) AT5G27100.1 (e_value=2e-49) | Symbols: ATGLR2.1, GLR2.1 | glutamate receptor 2.1 | chr5:9535160-9538311 REVERSE LENGTH=901;; (*ITAG) Solyc04g078860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61113344-61120190 transcript_region:SL2.40ch04:61113344..61120190+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9MVR4_POPTR); contains Interpro domain(s) IPR015683 Glutamate receptor-related "; GO:0005217 NbS00013178g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|207; (*GB) gi|359485422|ref|XP_002275844.2| (e_value=4e-52) PREDICTED: LOB domain-containing protein 36-like [Vitis vinifera];; (*SWP) sp|Q9LNB9|LBD2_ARATH (e_value=4e-49) LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2;; (*TAIR) AT1G06280.1 (e_value=3e-50) | Symbols: LBD2 | LOB domain-containing protein 2 | chr1:1920327-1920947 REVERSE LENGTH=206;; (*ITAG) Solyc12g010810.1.1 (e_value=6e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3722630-3723262 transcript_region:SL2.40ch12:3722630..3723262+ go_terms:GO:0005515 functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00013178g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|100 NbS00021352g0006.1 protein AED:0.11 eAED:0.11 QI:144|0.83|0.85|1|0.83|0.71|7|336|350; (*GB) gi|255578162|ref|XP_002529950.1| (e_value=5e-168) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|C0LGH2|Y1561_ARATH (e_value=7e-91) Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2;; (*TAIR) AT1G16670.1 (e_value=5e-147) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc10g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:508414-511531 transcript_region:SL2.40ch10:508414..511531+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6SYF0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00007423g0004.1 protein AED:0.29 eAED:0.32 QI:0|0.71|0.62|1|0.71|0.62|8|0|245; (*GB) gi|3914403|sp|O24164.1|PPOM_TOBAC (e_value=7e-147) RecName: Full=Protoporphyrinogen oxidase, mitochondrial; AltName: Full=PX-2; AltName: Full=Protoporphyrinogen IX oxidase isozyme II; Short=PPO II; Short=PPX II;; (*SWP) sp|O24164|PPOM_TOBAC (e_value=2e-148) Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1;; (*TAIR) AT5G14220.2 (e_value=4e-94) | Symbols: HEMG2, MEE61, PPO2 | Flavin containing amine oxidoreductase family | chr5:4583506-4587369 REVERSE LENGTH=478;; (*ITAG) Solyc03g005080.2.1 (e_value=2e-138) genomic_reference:SL2.40ch03 gene_region:54076-59635 transcript_region:SL2.40ch03:54076..59635- go_terms:GO:0055114 functional_description:"Protoporphyrinogen IX oxidase (AHRD V1 ***- Q9SLW5_SOYBN); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00014647g0008.1 protein AED:0.24 eAED:0.24 QI:68|0.90|0.91|1|0.45|0.41|12|331|337; (*GB) gi|296083097|emb|CBI22501.3| (e_value=1e-126) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74777|KRR1_SCHPO (e_value=3e-73) KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mis3 PE=2 SV=1;; (*TAIR) AT5G08420.1 (e_value=2e-109) | Symbols: | RNA-binding KH domain-containing protein | chr5:2713555-2716064 FORWARD LENGTH=391;; (*ITAG) Solyc02g069950.2.1 (e_value=1e-160) genomic_reference:SL2.40ch02 gene_region:34307961-34315387 transcript_region:SL2.40ch02:34307961..34315387+ go_terms:GO:0005515 functional_description:"Ribosomal RNA assembly protein mis3 (AHRD V1 **-- C5FFH1_NANOT)"; GO:0005515 NbS00014647g0007.1 protein AED:0.06 eAED:0.06 QI:12|1|1|1|1|1|3|106|295; (*GB) gi|225462151|ref|XP_002265883.1| (e_value=3e-92) PREDICTED: NAC domain-containing protein 42 [Vitis vinifera];; (*SWP) sp|Q9SK55|NAC42_ARATH (e_value=7e-75) NAC domain-containing protein 42 OS=Arabidopsis thaliana GN=NAC042 PE=2 SV=1;; (*TAIR) AT2G43000.1 (e_value=5e-76) | Symbols: anac042, NAC042 | NAC domain containing protein 42 | chr2:17880617-17882584 REVERSE LENGTH=275;; (*ITAG) Solyc02g069960.2.1 (e_value=4e-111) genomic_reference:SL2.40ch02 gene_region:34315619-34318868 transcript_region:SL2.40ch02:34315619..34318868- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9HH05_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00038047g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|799; (*GB) gi|359491313|ref|XP_002284678.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g61350 [Vitis vinifera];; (*SWP) sp|Q9FLJ8|Y5613_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1;; (*TAIR) AT5G61350.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:24667973-24670501 FORWARD LENGTH=842;; (*ITAG) Solyc03g115710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59398346-59400889 transcript_region:SL2.40ch03:59398346..59400889- go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00038047g0009.1 protein AED:0.14 eAED:0.14 QI:160|1|1|1|0.88|0.88|18|203|487; (*GB) gi|297733938|emb|CBI15185.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q17RB8|LONF1_HUMAN (e_value=3e-44) LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=2 SV=2;; (*TAIR) AT1G18660.1 (e_value=0.0) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:6421433-6425565 FORWARD LENGTH=486;; (*ITAG) Solyc03g115720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59402193-59411198 transcript_region:SL2.40ch03:59402193..59411198- go_terms:GO:0006508,GO:0005488,GO:0008270 functional_description:"ATP-dependent protease La (LON) domain (AHRD V1 *--- A3YXA7_9SYNE); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508,GO:0005488,GO:0008270 NbS00038047g0011.1 protein AED:0.07 eAED:0.07 QI:219|0.66|0.5|0.75|0.66|0.75|4|0|55; (*GB) gi|1216280|emb|CAA65244.1| (e_value=1e-20) SNF1-related protein kinase [Solanum tuberosum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=2e-15) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.3 (e_value=1e-16) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512;; (*ITAG) Solyc03g115700.2.1 (e_value=3e-23) genomic_reference:SL2.40ch03 gene_region:59393788-59397846 transcript_region:SL2.40ch03:59393788..59397846+ go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase alpha-2 catalytic subunit (AHRD V1 **** Q2LAI0_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00038047g0006.1 protein AED:0.21 eAED:0.21 QI:96|0.5|0.33|1|1|1|3|0|118; (*GB) gi|1216280|emb|CAA65244.1| (e_value=3e-61) SNF1-related protein kinase [Solanum tuberosum];; (*SWP) sp|Q38997|KIN10_ARATH (e_value=3e-33) SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2;; (*TAIR) AT3G01090.3 (e_value=2e-34) | Symbols: AKIN10, KIN10 | SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512;; (*ITAG) Solyc03g115700.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:59393788-59397846 transcript_region:SL2.40ch03:59393788..59397846+ go_terms:GO:0004679 functional_description:"5&apos-AMP-activated protein kinase alpha-2 catalytic subunit (AHRD V1 **** Q2LAI0_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00050512g0001.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-27) hypothetical protein [Nicotiana tabacum]; NbS00008830g0001.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0|1|1|1|4|0|267; (*GB) gi|356510355|ref|XP_003523904.1| (e_value=2e-110) PREDICTED: probable urea active transporter 1-like [Glycine max];; (*SWP) sp|Q8TFG0|DUR32_SCHPO (e_value=4e-13) Probable urea active transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dur3-2 PE=3 SV=1;; (*TAIR) AT5G45380.1 (e_value=2e-99) | Symbols: ATDUR3, DUR3 | solute:sodium symporters;urea transmembrane transporters | chr5:18391337-18395696 FORWARD LENGTH=704;; (*ITAG) Solyc08g075570.2.1 (e_value=6e-139) genomic_reference:SL2.40ch08 gene_region:56900486-56903907 transcript_region:SL2.40ch08:56900486..56903907+ go_terms:GO:0015204 functional_description:"Urea active transporter-like protein (AHRD V1 **** Q9FHJ8_ARATH); contains Interpro domain(s) IPR019900 Sodium/solute symporter, subgroup "; GO:0015204 NbS00008830g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.66|0.5|0.33|3|0|222 NbS00000114g0008.1 protein AED:0.36 eAED:0.38 QI:0|0.25|0|1|0|0|5|0|249; (*GB) gi|225435151|ref|XP_002281729.1| (e_value=2e-114) PREDICTED: chitinase 2 [Vitis vinifera];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=1e-101) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072760.1.1 (e_value=6e-152) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53046009-53046929 transcript_region:SL2.40ch11:53046009..53046929- go_terms:GO:0005975 functional_description:"Chitinase a (AHRD V1 ***- Q7M1R1_9ASPA); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00000114g0009.1 protein AED:0.45 eAED:0.49 QI:0|0.33|0.25|1|0.66|0.75|4|0|100 NbS00037180g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|11|0|396; (*GB) gi|403023|emb|CAA52979.1| (e_value=0.0) phosphate translocator [Nicotiana tabacum];; (*SWP) sp|P29463|TPT_SOLTU (e_value=0.0) Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1;; (*TAIR) AT5G46110.4 (e_value=0.0) | Symbols: APE2, TPT | Glucose-6-phosphate/phosphate translocator-related | chr5:18697606-18700223 FORWARD LENGTH=415;; (*ITAG) Solyc10g008980.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3003367-3007677 transcript_region:SL2.40ch10:3003367..3007677+ go_terms:GO:0008524 functional_description:"Triose phosphate/phosphate translocator (AHRD V1 **** Q9MSB6_MESCR); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00004278g0004.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0.5|0.66|3|0|235; (*GB) gi|255581283|ref|XP_002531453.1| (e_value=1e-116) zinc ion binding protein, putative [Ricinus communis];; (*TAIR) AT2G12646.1 (e_value=2e-96) | Symbols: | PLATZ transcription factor family protein | chr2:5167179-5169022 REVERSE LENGTH=256;; (*ITAG) Solyc07g007320.1.1 (e_value=5e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2042522-2043986 transcript_region:SL2.40ch07:2042522..2043986+ functional_description:"Zinc-binding protein (AHRD V1 *--- B6TVG2_MAIZE); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; NbS00059873g0004.1 protein AED:0.03 eAED:0.03 QI:64|0.6|0.83|1|1|1|6|136|531; (*GB) gi|255569697|ref|XP_002525813.1| (e_value=3e-82) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=2e-14) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT1G01110.2 (e_value=1e-49) | Symbols: IQD18 | IQ-domain 18 | chr1:52239-54494 FORWARD LENGTH=527;; (*ITAG) Solyc01g009340.2.1 (e_value=3e-119) genomic_reference:SL2.40ch01 gene_region:3537686-3541807 transcript_region:SL2.40ch01:3537686..3541807+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbC24016945g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|346466069|gb|AEO32879.1| (e_value=2e-60) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|Q7DMP0|CALM2_SOLTU (e_value=8e-62) Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=PCM2 PE=2 SV=1;; (*TAIR) AT3G43810.1 (e_value=1e-62) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=9e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00024486g0005.1 protein AED:0.24 eAED:0.24 QI:127|0.5|0.4|1|0.25|0.6|5|0|163; (*GB) gi|359473246|ref|XP_002269864.2| (e_value=1e-57) PREDICTED: 2-phytyl-1,4-naphtoquinone methyltransferase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q3ED65|MENG_ARATH (e_value=3e-50) 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2;; (*TAIR) AT1G23360.1 (e_value=3e-51) | Symbols: MENG | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8295421-8296893 REVERSE LENGTH=261;; (*ITAG) Solyc12g019010.1.1 (e_value=2e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:8972390-8979717 transcript_region:SL2.40ch12:8972390..8979717- go_terms:GO:0008168 functional_description:"Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (AHRD V1 ***- Q0ICA4_SYNS3); contains Interpro domain(s) IPR004033 UbiE/COQ5 methyltransferase "; GO:0008168 NbS00010756g0008.1 protein AED:0.12 eAED:0.20 QI:0|0.7|0.54|0.90|0.7|0.63|11|0|598; (*GB) gi|218197392|gb|EEC79819.1| (e_value=7e-96) hypothetical protein OsI_21272 [Oryza sativa Indica Group];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=2e-21) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT5G44800.1 (e_value=8e-23) | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr5:18083659-18092162 REVERSE LENGTH=2223;; (*ITAG) Solyc10g011940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:4231636-4240028 transcript_region:SL2.40ch10:4231636..4240028- go_terms:GO:0005634,GO:0005524,GO:0008270 functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 ***- D5LXF2_SCHMD); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0005634,GO:0005524,GO:0008270 NbS00010756g0007.1 protein AED:0.16 eAED:0.16 QI:220|1|1|1|1|1|12|377|340; (*GB) gi|51949800|gb|AAU14832.1| (e_value=0.0) adenosine kinase isoform 1S [Nicotiana tabacum];; (*SWP) sp|Q9LZG0|ADK2_ARATH (e_value=0.0) Adenosine kinase 2 OS=Arabidopsis thaliana GN=ADK2 PE=1 SV=1;; (*TAIR) AT5G03300.1 (e_value=0.0) | Symbols: ADK2 | adenosine kinase 2 | chr5:796573-798997 FORWARD LENGTH=345;; (*ITAG) Solyc09g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1440058-1444221 transcript_region:SL2.40ch09:1440058..1444221+ go_terms:GO:0004001 functional_description:"Adenosine kinase (AHRD V1 **** D2D2Z6_GOSHI); contains Interpro domain(s) IPR001805 Adenosine kinase "; GO:0004001 NbS00058590g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|0.66|1|1|3|0|189; (*GB) gi|56966965|pdb|1WS7|A (e_value=1e-28) Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini);; (*SWP) sp|P80728|MAVI_CUCPE (e_value=3e-30) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=7e-29) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc01g014060.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:11139275-11140208 transcript_region:SL2.40ch01:11139275..11140208- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00017806g0004.1 protein AED:0.22 eAED:0.25 QI:146|0.66|0.7|1|0.55|0.7|10|345|592; (*GB) gi|359476173|ref|XP_002285478.2| (e_value=0.0) PREDICTED: cysteinyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|B3E1P0|SYC_GEOLS (e_value=3e-146) Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=cysS PE=3 SV=1;; (*TAIR) AT2G31170.1 (e_value=0.0) | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase, class Ia family protein | chr2:13282559-13285616 REVERSE LENGTH=563;; (*ITAG) Solyc04g076390.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58889045-58898380 transcript_region:SL2.40ch04:58889045..58898380+ go_terms:GO:0004817 functional_description:"Cysteinyl tRNA synthetase (AHRD V1 **** D0FY60_BETVU); contains Interpro domain(s) IPR002308 Cysteinyl-tRNA synthetase, class Ia "; GO:0004817 NbS00039092g0002.1 protein AED:0.19 eAED:0.19 QI:543|1|1|1|1|1|6|319|375; (*GB) gi|350539619|ref|NP_001234734.1| (e_value=0.0) GDP-mannose 3',5'-epimerase [Solanum lycopersicum];; (*SWP) sp|A2Z7B3|GME1_ORYSI (e_value=0.0) GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1;; (*TAIR) AT5G28840.2 (e_value=0.0) | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377;; (*ITAG) Solyc01g097340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79999429-80002633 transcript_region:SL2.40ch01:79999429..80002633+ go_terms:GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase family protein-like protein (AHRD V1 ***- Q2XPW6_SOLTU); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00039092g0015.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.5|1|0.8|0.66|6|0|442; (*GB) gi|16797791|gb|AAL27150.1| (e_value=0.0) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=1e-131) Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2;; (*TAIR) AT5G28770.2 (e_value=4e-74) | Symbols: BZO2H3 | bZIP transcription factor family protein | chr5:10796648-10798147 REVERSE LENGTH=314;; (*ITAG) Solyc01g097330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79990166-79995989 transcript_region:SL2.40ch01:79990166..79995989+ go_terms:GO:0046982,GO:0003677 functional_description:"Opaque 2 (Fragment) (AHRD V1 *--- Q84YB2_ZEAPE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0003677 NbS00039092g0011.1 protein AED:0.21 eAED:0.21 QI:77|1|0.75|1|1|1|4|0|328; (*GB) gi|255580961|ref|XP_002531299.1| (e_value=8e-125) calcium ion binding protein, putative [Ricinus communis];; (*TAIR) AT5G28830.1 (e_value=1e-102) | Symbols: | calcium-binding EF hand family protein | chr5:10856801-10858394 FORWARD LENGTH=324;; (*ITAG) Solyc01g097350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80004734-80009186 transcript_region:SL2.40ch01:80004734..80009186- functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7M6Y9_ARALY)"; NbS00019118g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|224100779|ref|XP_002312011.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g063790.1.1 (e_value=6e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63364184-63364768 transcript_region:SL2.40ch07:63364184..63364768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019118g0008.1 protein AED:0.14 eAED:0.14 QI:398|0.97|0.97|1|0.84|0.87|40|546|1544; (*GB) gi|116047947|gb|ABJ53199.1| (e_value=0.0) myosin XI-K [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT5G20490.1 (e_value=0.0) | Symbols: XIK, ATXIK, XI-17 | Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545;; (*ITAG) Solyc07g041150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49203508-49220064 transcript_region:SL2.40ch07:49203508..49220064+ go_terms:GO:0060001 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00024460g0023.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.71|1|0.5|0.42|7|372|183; (*GB) gi|356547972|ref|XP_003542378.1| (e_value=4e-81) PREDICTED: 2Fe-2S ferredoxin-like [Glycine max];; (*SWP) sp|Q9AKH1|FER2_RICRI (e_value=3e-47) 2Fe-2S ferredoxin OS=Rickettsia rickettsii GN=fdxB PE=3 SV=1;; (*TAIR) AT4G21090.3 (e_value=4e-77) | Symbols: ATMFDX2, MFDX2 | MITOCHONDRIAL FERREDOXIN 2 | chr4:11256663-11258269 REVERSE LENGTH=197;; (*ITAG) Solyc11g065640.1.1 (e_value=2e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48242732-48251509 transcript_region:SL2.40ch11:48242732..48251509+ go_terms:GO:0051536,GO:0051537 functional_description:"2Fe-2S ferredoxin (AHRD V1 *-*- B6U5I8_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536,GO:0051537 NbS00024460g0002.1 protein AED:0.16 eAED:0.17 QI:221|1|0.5|1|0|0|2|0|621; (*GB) gi|225451899|ref|XP_002279045.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g38730-like [Vitis vinifera];; (*SWP) sp|Q9FKR3|PP404_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1;; (*TAIR) AT5G38730.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15510901-15512691 FORWARD LENGTH=596;; (*ITAG) Solyc04g050550.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:46729391-46731157 transcript_region:SL2.40ch04:46729391..46731157+ go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJV3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00024460g0010.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|95; (*GB) gi|225435429|ref|XP_002285411.1| (e_value=5e-34) PREDICTED: uncharacterized protein LOC100267343 isoform 1 [Vitis vinifera];; (*TAIR) AT3G20920.2 (e_value=2e-29) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=364;; (*ITAG) Solyc11g065690.1.1 (e_value=2e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48305577-48311971 transcript_region:SL2.40ch11:48305577..48311971+ go_terms:GO:0016021 functional_description:"Protein transporter (AHRD V1 **-- B6UFL6_MAIZE); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00024460g0020.1 protein AED:0.14 eAED:0.14 QI:201|1|1|1|0.87|0.77|9|365|535; (*GB) gi|47271332|emb|CAG27839.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana plumbaginifolia];; (*SWP) sp|Q42438|CDPK8_ARATH (e_value=0.0) Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1;; (*TAIR) AT5G19450.2 (e_value=0.0) | Symbols: CDPK19, CPK8 | calcium-dependent protein kinase 19 | chr5:6558672-6561471 REVERSE LENGTH=533;; (*ITAG) Solyc11g065660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48274194-48279107 transcript_region:SL2.40ch11:48274194..48279107- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 8 (AHRD V1 ***- Q6KC54_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00024460g0021.1 protein AED:0.44 eAED:0.44 QI:81|1|0.5|1|0|0|2|0|175; (*GB) gi|255544872|ref|XP_002513497.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01870.1 (e_value=3e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:389846-390319 REVERSE LENGTH=157;; (*ITAG) Solyc11g065680.1.1 (e_value=8e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48299175-48301720 transcript_region:SL2.40ch11:48299175..48301720- functional_description:"Unknown Protein (AHRD V1)"; NbS00048597g0003.1 protein AED:0.31 eAED:0.31 QI:6|0.71|0.75|1|0.85|0.75|8|0|502; (*GB) gi|359488419|ref|XP_002277453.2| (e_value=4e-150) PREDICTED: potassium transporter 4-like [Vitis vinifera];; (*SWP) sp|Q9LD18|POT4_ARATH (e_value=2e-128) Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2;; (*TAIR) AT3G02050.1 (e_value=2e-129) | Symbols: KUP3, ATKUP3, ATKT4 | K+ uptake transporter 3 | chr3:350815-354135 FORWARD LENGTH=789;; (*ITAG) Solyc12g096580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63777456-63782098 transcript_region:SL2.40ch12:63777456..63782098+ go_terms:GO:0016020 functional_description:"Potassium transporter (AHRD V1 ***- Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00046741g0005.1 protein AED:0.08 eAED:0.08 QI:18|0.66|0.7|1|0.77|0.9|10|418|442; (*GB) gi|225447334|ref|XP_002280408.1| (e_value=1e-129) PREDICTED: traB domain-containing protein isoform 1 [Vitis vinifera];; (*SWP) sp|Q99JY4|TRABD_MOUSE (e_value=1e-21) TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1;; (*TAIR) AT1G05270.1 (e_value=8e-124) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00009561g0003.1 protein AED:0.20 eAED:0.20 QI:518|1|1|1|0.8|0.5|6|878|283 NbS00009561g0001.1 protein AED:0.21 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|184; (*ITAG) Solyc10g049720.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41978110-41979903 transcript_region:SL2.40ch10:41978110..41979903+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00041644g0003.1 protein AED:0.24 eAED:0.24 QI:39|1|1|1|0.86|1|16|246|545; (*GB) gi|225460867|ref|XP_002277794.1| (e_value=0.0) PREDICTED: EH domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q5E9R3|EHD1_BOVIN (e_value=2e-158) EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1;; (*TAIR) AT3G20290.2 (e_value=0.0) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc12g014460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5441221-5446746 transcript_region:SL2.40ch12:5441221..5446746+ go_terms:GO:0005525,GO:0005509 functional_description:"EH-domain-containing protein 1 (AHRD V1 ***- B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525,GO:0005509 NbS00020745g0009.1 protein AED:0.25 eAED:0.25 QI:85|0.86|0.81|1|0.86|0.81|16|0|843; (*GB) gi|255559152|ref|XP_002520598.1| (e_value=0.0) Heat shock 70 kDa protein, putative [Ricinus communis];; (*SWP) sp|F4JMJ1|HSP7R_ARATH (e_value=0.0) Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1;; (*TAIR) AT4G16660.1 (e_value=0.0) | Symbols: | heat shock protein 70 (Hsp 70) family protein | chr4:9377225-9381232 FORWARD LENGTH=867;; (*ITAG) Solyc07g043560.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54781149-54789496 transcript_region:SL2.40ch07:54781149..54789496- go_terms:GO:0005515 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005515 NbS00020745g0010.1 protein AED:0.12 eAED:0.12 QI:36|0.75|0.66|1|0.62|0.66|9|0|375; (*GB) gi|225444161|ref|XP_002270765.1| (e_value=0.0) PREDICTED: UDP-arabinose 4-epimerase 1 [Vitis vinifera];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=0.0) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.2 (e_value=0.0) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=419;; (*ITAG) Solyc12g006410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:898344-901102 transcript_region:SL2.40ch12:898344..901102- go_terms:GO:0006012,GO:0044237,GO:0008152 functional_description:"UDP-glucose 4-epimerase (AHRD V1 ***- B3XXH6_9BACT); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0006012,GO:0044237,GO:0008152 NbS00019946g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|225459188|ref|XP_002284015.1| (e_value=9e-78) PREDICTED: putative clathrin assembly protein At4g40080-like [Vitis vinifera];; (*SWP) sp|Q8L936|CAP16_ARATH (e_value=1e-37) Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2;; (*TAIR) AT4G40080.1 (e_value=1e-38) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr4:18579371-18580542 FORWARD LENGTH=365;; (*ITAG) Solyc04g074830.1.1 (e_value=5e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58341226-58342242 transcript_region:SL2.40ch04:58341226..58342242+ go_terms:GO:0005488 functional_description:"At4g40080-like protein (Fragment) (AHRD V1 ***- B3SK93_ARALY); contains Interpro domain(s) IPR013809 Epsin-like, N-terminal "; GO:0005488 NbS00019946g0103.1 protein AED:0.10 eAED:0.14 QI:0|0|0|1|1|1|2|0|326 NbS00010060g0001.1 protein AED:0.29 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|297746065|emb|CBI16121.3| (e_value=3e-57) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G59390.1 (e_value=7e-47) | Symbols: | XH/XS domain-containing protein | chr5:23954934-23957151 FORWARD LENGTH=561;; (*ITAG) Solyc06g005550.1.1 (e_value=1e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:588709-591934 transcript_region:SL2.40ch06:588709..591934+ functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E5_ZEAMP); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00010060g0006.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|1|1|3|0|167; (*GB) gi|356553836|ref|XP_003545257.1| (e_value=5e-36) PREDICTED: uncharacterized protein LOC100790814 [Glycine max];; (*TAIR) AT1G13790.1 (e_value=1e-29) | Symbols: | XH/XS domain-containing protein | chr1:4727438-4730229 FORWARD LENGTH=736;; (*ITAG) Solyc06g005550.1.1 (e_value=2e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:588709-591934 transcript_region:SL2.40ch06:588709..591934+ functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E5_ZEAMP); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00010060g0007.1 protein AED:0.02 eAED:0.02 QI:71|0.5|0.66|1|1|1|3|122|248; (*GB) gi|40217876|gb|AAR82849.1| (e_value=5e-155) expansin-1 [Petunia x hybrida];; (*SWP) sp|O48818|EXPA4_ARATH (e_value=3e-143) Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1;; (*TAIR) AT2G39700.1 (e_value=2e-144) | Symbols: ATEXPA4, ATEXP4, ATHEXP ALPHA 1.6, EXPA4 | expansin A4 | chr2:16544246-16545434 REVERSE LENGTH=257;; (*ITAG) Solyc06g005560.2.1 (e_value=5e-157) genomic_reference:SL2.40ch06 gene_region:592513-595666 transcript_region:SL2.40ch06:592513..595666- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00022410g0008.1 protein AED:0.03 eAED:0.03 QI:0|0.53|0.5|0.92|0.61|0.57|14|639|2722; (*GB) gi|359476456|ref|XP_002272127.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260617 [Vitis vinifera];; (*TAIR) AT4G31570.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). | chr4:15297061-15306036 FORWARD LENGTH=2730;; (*ITAG) Solyc08g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1014434-1028073 transcript_region:SL2.40ch08:1014434..1028073+ functional_description:"Myosin-like protein (Fragment) (AHRD V1 *-*- Q84VD2_ORYSJ)"; NbS00022693g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|0.75|0.6|5|0|755; (*GB) gi|46367701|dbj|BAD15363.1| (e_value=0.0) nitrite reductase [Nicotiana tabacum];; (*SWP) sp|P05314|NIR_SPIOL (e_value=0.0) Ferredoxin--nitrite reductase, chloroplastic OS=Spinacia oleracea GN=NIR PE=1 SV=1;; (*TAIR) AT2G15620.1 (e_value=0.0) | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810552-6812666 FORWARD LENGTH=586;; (*ITAG) Solyc01g108630.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87640633-87643378 transcript_region:SL2.40ch01:87640633..87643378+ go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76KB0_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region "; GO:0005515 NbS00022693g0008.1 protein AED:0.29 eAED:0.33 QI:0|0.83|0.71|1|1|1|7|0|441; (*GB) gi|225428776|ref|XP_002282055.1| (e_value=8e-169) PREDICTED: uncharacterized protein LOC100245307 [Vitis vinifera];; (*TAIR) AT2G15695.1 (e_value=8e-143) | Symbols: | Protein of unknown function DUF829, transmembrane 53 | chr2:6834194-6836336 REVERSE LENGTH=420;; (*ITAG) Solyc01g108620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87634718-87638577 transcript_region:SL2.40ch01:87634718..87638577+ functional_description:"Os11g0614900 protein (Fragment) (AHRD V1 *-*- Q0IRN0_ORYSJ); contains Interpro domain(s) IPR008547 Protein of unknown function DUF829, transmembrane 53 "; NbS00022693g0007.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|1|1|3|0|70 NbS00039768g0011.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.66|0.66|1|1|3|0|153; (*GB) gi|224080075|ref|XP_002306007.1| (e_value=4e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R833|ACO13_PONAB (e_value=7e-23) Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1;; (*TAIR) AT1G04290.1 (e_value=4e-69) | Symbols: | Thioesterase superfamily protein | chr1:1147721-1148352 REVERSE LENGTH=155;; (*ITAG) Solyc09g005390.2.1 (e_value=2e-92) genomic_reference:SL2.40ch09 gene_region:293798-296596 transcript_region:SL2.40ch09:293798..296596+ go_terms:GO:0016291,GO:0042802 functional_description:"Thioesterase family protein (AHRD V1 **** D7KDD0_ARALY); contains Interpro domain(s) IPR003736 Phenylacetic acid degradation-related protein "; GO:0016291,GO:0042802 NbS00039768g0013.1 protein AED:0.25 eAED:0.25 QI:180|1|1|1|0.85|0.75|8|305|287; (*GB) gi|224053669|ref|XP_002297920.1| (e_value=2e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWR0|COX11_ARATH (e_value=8e-117) Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thaliana GN=COX11 PE=2 SV=1;; (*TAIR) AT1G02410.1 (e_value=6e-118) | Symbols: | cytochrome c oxidase assembly protein CtaG / Cox11 family | chr1:491300-492762 FORWARD LENGTH=287;; (*ITAG) Solyc05g012440.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5684753-5688122 transcript_region:SL2.40ch05:5684753..5688122- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase assembly protein ctaG (AHRD V1 **** B6T5S8_MAIZE); contains Interpro domain(s) IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 "; GO:0004129 NbS00039768g0012.1 protein AED:0.33 eAED:0.33 QI:0|1|0.71|1|1|1|7|0|496; (*GB) gi|15289760|dbj|BAB63464.1| (e_value=0.0) calcium dependent protein kinase [Solanum tuberosum];; (*SWP) sp|P28583|CDPK_SOYBN (e_value=0.0) Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G35670.1 (e_value=0.0) | Symbols: ATCDPK2, CPK11, ATCPK11, CDPK2 | calcium-dependent protein kinase 2 | chr1:13205456-13208058 FORWARD LENGTH=495;; (*ITAG) Solyc05g056570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64966125-64971506 transcript_region:SL2.40ch05:64966125..64971506+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase (AHRD V1 **** Q93XI9_SOLTU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00052432g0003.1 protein AED:0.42 eAED:0.46 QI:0|0|0|1|0|0|2|0|157; (*GB) gi|290489612|gb|ADD31190.1| (e_value=3e-45) RNA polymerase beta subunit protein [Ilex cornuta];; (*SWP) sp|Q09G54|RPOB_PLAOC (e_value=5e-46) DNA-directed RNA polymerase subunit beta OS=Platanus occidentalis GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=5e-41) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g017750.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7358767-7359623 transcript_region:SL2.40ch12:7358767..7359623- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WEM8_LIQST); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00052432g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|3|0|104; (*GB) gi|28261709|ref|NP_783224.1| (e_value=4e-35) RNA polymerase beta subunit [Atropa belladonna];; (*SWP) sp|Q8S8X9|RPOB_ATRBE (e_value=1e-36) DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=3e-36) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc12g035870.1.1 (e_value=5e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29020873-29022576 transcript_region:SL2.40ch12:29020873..29022576+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- D3WBK7_9AQUA); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00010873g0007.1 protein AED:0.39 eAED:0.52 QI:0|0|0|1|0|0.5|4|0|194 NbS00010873g0005.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.5|0|0.5|2|0|81 NbS00010873g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|2|0|396; (*GB) gi|224114541|ref|XP_002332355.1| (e_value=1e-135) predicted protein [Populus trichocarpa];; (*SWP) sp|Q13573|SNW1_HUMAN (e_value=2e-77) SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1;; (*TAIR) AT1G77180.3 (e_value=7e-73) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=511;; (*ITAG) Solyc11g017220.1.1 (e_value=9e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8031719-8032975 transcript_region:SL2.40ch11:8031719..8032975+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00010873g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|189; (*GB) gi|113205274|gb|ABI34321.1| (e_value=9e-33) RNase H family protein [Solanum demissum]; NbS00029812g0008.1 protein AED:0.04 eAED:0.04 QI:77|1|1|1|0.33|0.5|4|567|174; (*GB) gi|356562945|ref|XP_003549728.1| (e_value=4e-113) PREDICTED: actin-related protein 2/3 complex subunit 3-like [Glycine max];; (*SWP) sp|Q9JM76|ARPC3_MOUSE (e_value=2e-52) Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3;; (*TAIR) AT1G60430.2 (e_value=9e-114) | Symbols: ARPC3 | actin-related protein C3 | chr1:22264797-22265682 REVERSE LENGTH=174;; (*ITAG) Solyc07g007630.2.1 (e_value=2e-121) genomic_reference:SL2.40ch07 gene_region:2284472-2288609 transcript_region:SL2.40ch07:2284472..2288609+ go_terms:GO:0051015 functional_description:"Actin-related protein 2/3 complex subunit 3 (AHRD V1 **** B6U3I7_MAIZE); contains Interpro domain(s) IPR007204 ARP2/3 complex, p21-Arc subunit "; GO:0051015 NbS00029812g0009.1 protein AED:0.33 eAED:0.42 QI:0|0.4|0.16|1|0.4|0.33|6|0|449; (*GB) gi|359484748|ref|XP_003633155.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=6e-111) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=4e-112) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=7e-141) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00042969g0007.1 protein AED:0.22 eAED:0.22 QI:0|0.71|0.6|1|0.71|0.6|15|0|868; (*GB) gi|147775817|emb|CAN75924.1| (e_value=0.0) hypothetical protein VITISV_029516 [Vitis vinifera];; (*SWP) sp|Q6S001|KIF11_DICDI (e_value=3e-66) Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1;; (*TAIR) AT2G21300.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862;; (*ITAG) Solyc01g110380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88860841-88867416 transcript_region:SL2.40ch01:88860841..88867416+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00020264g0001.1 protein AED:0.16 eAED:0.16 QI:0|0.76|0.64|0.92|1|1|14|0|673; (*GB) gi|350537845|ref|NP_001234569.1| (e_value=0.0) sulfate transporter 2 [Solanum lycopersicum];; (*SWP) sp|Q9FEP7|SUT13_ARATH (e_value=0.0) Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1;; (*TAIR) AT1G22150.1 (e_value=0.0) | Symbols: SULTR1;3 | sulfate transporter 1;3 | chr1:7818361-7821344 FORWARD LENGTH=656;; (*ITAG) Solyc04g072760.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57323894-57327409 transcript_region:SL2.40ch04:57323894..57327409+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00005711g0012.1 protein AED:0.26 eAED:0.26 QI:190|1|1|1|1|1|4|0|246; (*GB) gi|224059734|ref|XP_002299981.1| (e_value=2e-87) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19430.1 (e_value=2e-67) | Symbols: | RING/U-box superfamily protein | chr5:6553998-6555616 FORWARD LENGTH=255;; (*ITAG) Solyc11g064830.1.1 (e_value=3e-108) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:47135688-47142111 transcript_region:SL2.40ch11:47135688..47142111+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LZ79_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00005711g0010.1 protein AED:0.28 eAED:0.28 QI:51|1|0.4|1|0.75|0.6|5|0|322; (*GB) gi|224120582|ref|XP_002330978.1| (e_value=2e-146) predicted protein [Populus trichocarpa];; (*TAIR) AT4G15010.2 (e_value=2e-146) | Symbols: | Mitochondrial substrate carrier family protein | chr4:8573125-8574864 REVERSE LENGTH=378;; (*ITAG) Solyc11g007070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1541091-1544515 transcript_region:SL2.40ch11:1541091..1544515+ go_terms:GO:0016020 functional_description:"Mitochondrial substrate carrier family protein (AHRD V1 ***- D7MB92_ARALY); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00005711g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|1|1|3|0|372; (*GB) gi|224105977|ref|XP_002314000.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=2e-22) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT2G26870.1 (e_value=0.0) | Symbols: NPC2 | non-specific phospholipase C2 | chr2:11457117-11459355 REVERSE LENGTH=514;; (*ITAG) Solyc01g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2826378-2831040 transcript_region:SL2.40ch01:2826378..2831040+ go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7LEV5_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00006456g0008.1 protein AED:0.01 eAED:0.01 QI:64|1|1|1|1|1|3|122|141; (*GB) gi|296090013|emb|CBI39832.3| (e_value=3e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g015920.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:5929201-5930450 transcript_region:SL2.40ch12:5929201..5930450+ functional_description:"ATFP4 (AHRD V1 *-*- B6UDP3_MAIZE)"; NbS00006456g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|359; (*GB) gi|147803488|emb|CAN70939.1| (e_value=8e-123) hypothetical protein VITISV_001965 [Vitis vinifera];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=1e-110) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT4G26500.1 (e_value=9e-112) | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | chloroplast sulfur E | chr4:13382456-13383571 REVERSE LENGTH=371;; (*ITAG) Solyc12g015910.1.1 (e_value=1e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5904837-5905898 transcript_region:SL2.40ch12:5904837..5905898+ functional_description:"Cysteine desulfuration protein SufE (AHRD V1 *-*- D3IBF0_9BACT); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00006456g0006.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|290; (*GB) gi|359494339|ref|XP_003634761.1| (e_value=3e-94) PREDICTED: uncharacterized protein LOC100852612 [Vitis vinifera];; (*TAIR) AT2G04220.1 (e_value=1e-95) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc12g015900.1.1 (e_value=3e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5884905-5885801 transcript_region:SL2.40ch12:5884905..5885801- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS21_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00006456g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|126; (*GB) gi|206114251|gb|ACI05253.1| (e_value=6e-15) type I MADS box transcription factor [Petunia x hybrida];; (*ITAG) Solyc12g016180.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:6263992-6264651 transcript_region:SL2.40ch12:6263992..6264651- go_terms:GO:0003700 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-** D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003700 NbS00034692g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|297; (*GB) gi|359496981|ref|XP_003635389.1| (e_value=4e-81) PREDICTED: uncharacterized protein LOC100854561 [Vitis vinifera];; (*TAIR) AT4G35680.1 (e_value=9e-37) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16917938-16919749 FORWARD LENGTH=503;; (*ITAG) Solyc02g082980.1.1 (e_value=4e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41150273-41151151 transcript_region:SL2.40ch02:41150273..41151151+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00034692g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|359496981|ref|XP_003635389.1| (e_value=6e-90) PREDICTED: uncharacterized protein LOC100854561 [Vitis vinifera];; (*TAIR) AT4G35690.1 (e_value=2e-41) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g082980.1.1 (e_value=4e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41150273-41151151 transcript_region:SL2.40ch02:41150273..41151151+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00034692g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|1|1|3|0|250; (*GB) gi|3790355|dbj|BAA33971.1| (e_value=4e-142) chitinase 134 [Nicotiana tabacum];; (*SWP) sp|Q05537|CHID_SOLLC (e_value=2e-127) Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1;; (*TAIR) AT3G12500.1 (e_value=2e-101) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc02g082960.2.1 (e_value=5e-137) genomic_reference:SL2.40ch02 gene_region:41142255-41143956 transcript_region:SL2.40ch02:41142255..41143956+ go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR000726 Glycoside hydrolase, family 19, catalytic "; GO:0008843 NbS00034692g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|598|353; (*GB) gi|147788269|emb|CAN69960.1| (e_value=0.0) hypothetical protein VITISV_032887 [Vitis vinifera];; (*SWP) sp|Q84J71|PP161_ARATH (e_value=9e-172) Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1;; (*TAIR) AT2G17670.1 (e_value=7e-173) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7674420-7675811 FORWARD LENGTH=463;; (*ITAG) Solyc02g082970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41146637-41148046 transcript_region:SL2.40ch02:41146637..41148046+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L9H0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013688g0002.1 protein AED:0.00 eAED:0.00 QI:123|1|1|1|0|1|2|100|103 NbS00013688g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-20) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g062880.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00013688g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|197130963|gb|ACH47034.1| (e_value=0.0) lateral suppressor protein [Nicotiana tabacum];; (*SWP) sp|Q9ZWC5|SCL18_ARATH (e_value=4e-126) Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1;; (*TAIR) AT1G55580.1 (e_value=3e-127) | Symbols: LAS, SCL18 | GRAS family transcription factor | chr1:20764106-20765443 FORWARD LENGTH=445;; (*ITAG) Solyc07g066250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64958148-64959434 transcript_region:SL2.40ch07:64958148..64959434+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-* B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00042539g0001.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|300; (*GB) gi|225462211|ref|XP_002270778.1| (e_value=2e-66) PREDICTED: uncharacterized protein LOC100259352 [Vitis vinifera];; (*TAIR) AT1G79060.1 (e_value=3e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 3399 Blast hits to 980 proteins in 195 species: Archae - 0; Bacteria - 839; Metazoa - 390; Fungi - 256; Plants - 154; Viruses - 9; Other Eukaryotes - 1751 (source: NCBI BLink). | chr1:29741873-29743063 FORWARD LENGTH=396;; (*ITAG) Solyc10g005610.1.1 (e_value=3e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:495825-496940 transcript_region:SL2.40ch10:495825..496940+ functional_description:"Unknown Protein (AHRD V1)"; NbC25359043g0001.1 protein AED:0.01 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|162955767|gb|ABY25273.1| (e_value=1e-73) putrescine N-methyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9SEH5|PMT3_TOBAC (e_value=4e-61) Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1;; (*ITAG) Solyc08g014310.2.1 (e_value=1e-12) genomic_reference:SL2.40ch08 gene_region:4025809-4029506 transcript_region:SL2.40ch08:4025809..4029506+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A7DY57_COCOF); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00033159g0002.1 protein AED:0.20 eAED:0.20 QI:207|0.83|0.71|1|0.33|0.28|7|0|250; (*GB) gi|359484523|ref|XP_002283341.2| (e_value=1e-137) PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9ZQP1|DSP8_ARATH (e_value=9e-97) Putative dual specificity protein phosphatase DSP8 OS=Arabidopsis thaliana GN=DSP8 PE=2 SV=2;; (*TAIR) AT2G35680.1 (e_value=7e-98) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr2:14997004-14998590 REVERSE LENGTH=337;; (*ITAG) Solyc12g008620.1.1 (e_value=2e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2004115-2006399 transcript_region:SL2.40ch12:2004115..2006399+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase family protein (AHRD V1 ***- Q1EP41_MUSBA); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00033159g0010.1 protein AED:0.39 eAED:0.39 QI:136|0.81|0.91|1|0.81|0.83|12|0|433; (*GB) gi|266567|sp|P29677.1|MPPA_SOLTU (e_value=0.0) RecName: Full=Mitochondrial-processing peptidase subunit alpha; AltName: Full=Alpha-MPP; AltName: Full=Ubiquinol-cytochrome-c reductase subunit II; Flags: Precursor;; (*SWP) sp|P29677|MPPA_SOLTU (e_value=0.0) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.2 (e_value=0.0) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323929-19326771 REVERSE LENGTH=451;; (*ITAG) Solyc12g008630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00024488g0003.1 protein AED:0.08 eAED:0.08 QI:100|0.6|0.66|1|0.8|0.66|6|172|533; (*GB) gi|1685087|gb|AAC49536.1| (e_value=0.0) diphenol oxidase [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc09g014240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5730476-5734045 transcript_region:SL2.40ch09:5730476..5734045+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00005017g0004.1 protein AED:0.34 eAED:0.37 QI:0|0.44|0.3|1|1|1|10|0|613; (*GB) gi|225443339|ref|XP_002264125.1| (e_value=2e-164) PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=1e-13) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT1G51580.1 (e_value=1e-106) | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621;; (*ITAG) Solyc12g055780.1.1 (e_value=1e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47118782-47122187 transcript_region:SL2.40ch12:47118782..47122187- go_terms:GO:0003723 functional_description:"Poly(RC) binding protein 1 (AHRD V1 ***- Q53SS8_HUMAN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003723 NbS00005017g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|3|0|710; (*GB) gi|255548592|ref|XP_002515352.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|O54922|EXOC7_RAT (e_value=4e-19) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT4G31540.1 (e_value=1e-175) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc12g055770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47113855-47115825 transcript_region:SL2.40ch12:47113855..47115825- go_terms:GO:0000145 functional_description:"Exocyst complex component EXO70 (AHRD V1 *--- EXO70_YEAST); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00005017g0103.1 protein AED:0.05 eAED:0.05 QI:4|1|1|1|0|0.5|2|930|70 NbS00018516g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|0.8|0.83|6|735|199; (*GB) gi|4097579|gb|AAD00116.1| (e_value=6e-148) NTGP1 [Nicotiana tabacum];; (*SWP) sp|Q9ZRD6|YKT61_ARATH (e_value=3e-134) VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1;; (*TAIR) AT5G58060.1 (e_value=2e-135) | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily protein | chr5:23498277-23500128 FORWARD LENGTH=199;; (*ITAG) Solyc07g005200.2.1 (e_value=7e-150) genomic_reference:SL2.40ch07 gene_region:190053-194064 transcript_region:SL2.40ch07:190053..194064+ go_terms:GO:0019706,GO:0005484 functional_description:"Synaptobrevin homolog YKT6 (AHRD V1 **-- C4QZ63_PICPG); contains Interpro domain(s) IPR010908 Longin "; GO:0019706,GO:0005484 NbS00013764g0008.1 protein AED:0.21 eAED:0.21 QI:55|0|0|1|0.25|0|5|0|270; (*GB) gi|255539232|ref|XP_002510681.1| (e_value=6e-91) serine/threonine-protein kinase cx32, putative [Ricinus communis];; (*SWP) sp|P43293|NAK_ARATH (e_value=3e-65) Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2;; (*TAIR) AT1G76360.1 (e_value=1e-80) | Symbols: | Protein kinase superfamily protein | chr1:28643242-28646483 REVERSE LENGTH=484;; (*ITAG) Solyc04g082500.2.1 (e_value=9e-93) genomic_reference:SL2.40ch04 gene_region:63746025-63750192 transcript_region:SL2.40ch04:63746025..63750192- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013764g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|225455734|ref|XP_002268089.1| (e_value=1e-152) PREDICTED: UDP-glycosyltransferase 89B1-like [Vitis vinifera];; (*SWP) sp|Q9C9B0|U89B1_ARATH (e_value=5e-138) UDP-glycosyltransferase 89B1 OS=Arabidopsis thaliana GN=UGT89B1 PE=2 SV=2;; (*TAIR) AT1G73880.1 (e_value=4e-139) | Symbols: UGT89B1 | UDP-glucosyl transferase 89B1 | chr1:27785143-27786564 FORWARD LENGTH=473;; (*ITAG) Solyc03g114710.2.1 (e_value=3e-120) genomic_reference:SL2.40ch03 gene_region:58661374-58663109 transcript_region:SL2.40ch03:58661374..58663109- go_terms:GO:0080044 functional_description:"Glucosyltransferase (AHRD V1 **** B5MGN9_PHYAM); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00013764g0007.1 protein AED:0.11 eAED:0.11 QI:116|0.85|0.87|1|0.85|0.75|8|606|455; (*GB) gi|1705613|sp|P49319.2|CATA1_TOBAC (e_value=0.0) RecName: Full=Catalase isozyme 1; AltName: Full=Salicylic acid-binding protein; Short=SABP;; (*SWP) sp|P49319|CATA1_TOBAC (e_value=0.0) Catalase isozyme 1 OS=Nicotiana tabacum GN=CAT-1 PE=1 SV=2;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc12g094620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63142846-63144894 transcript_region:SL2.40ch12:63142846..63144894+ go_terms:GO:0055114 functional_description:"Catalase (AHRD V1 ***- Q2PYW5_SOLTU); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0055114 NbS00020280g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0|0.5|2|0|98; (*GB) gi|298205158|emb|CBI17217.3| (e_value=9e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-55) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G04910.1 (e_value=2e-56) | Symbols: | O-fucosyltransferase family protein | chr1:1388101-1391074 REVERSE LENGTH=519;; (*ITAG) Solyc05g053720.2.1 (e_value=2e-60) genomic_reference:SL2.40ch05 gene_region:62901420-62908425 transcript_region:SL2.40ch05:62901420..62908425- functional_description:"Os12g0425600 protein (Fragment) (AHRD V1 **-- Q0INN2_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00012466g0001.1 protein AED:0.13 eAED:0.20 QI:109|0|0.5|1|0|0.5|2|217|432; (*GB) gi|224088041|ref|XP_002308303.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T0K5|LRX3_ARATH (e_value=2e-92) Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1;; (*TAIR) AT2G19780.1 (e_value=1e-149) | Symbols: | Leucine-rich repeat (LRR) family protein | chr2:8522831-8524039 REVERSE LENGTH=402;; (*ITAG) Solyc05g026240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:40181138-40182313 transcript_region:SL2.40ch05:40181138..40182313+ go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00012466g0002.1 protein AED:0.17 eAED:0.18 QI:0|1|0|1|1|1|2|0|128; (*GB) gi|225445051|ref|XP_002283385.1| (e_value=1e-64) PREDICTED: acid phosphatase 1-like [Vitis vinifera];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=7e-52) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G29260.1 (e_value=7e-53) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:14422310-14423409 REVERSE LENGTH=255;; (*ITAG) Solyc08g066530.2.1 (e_value=1e-79) genomic_reference:SL2.40ch08 gene_region:52464757-52475814 transcript_region:SL2.40ch08:52464757..52475814- go_terms:GO:0003993 functional_description:"Acid phosphatase-like protein (AHRD V1 **-- Q9M0F5_ARATH); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00003647g0009.1 protein AED:0.14 eAED:0.14 QI:459|0.6|0.83|1|0.4|0.5|6|629|164; (*ITAG) Solyc08g082710.2.1 (e_value=2e-61) genomic_reference:SL2.40ch08 gene_region:62575845-62579735 transcript_region:SL2.40ch08:62575845..62579735+ functional_description:"Protein ABIL1 (AHRD V1 **-- B6TQN2_MAIZE)"; NbS00003647g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.73|0.81|0.93|0.86|0.93|16|0|870; (*GB) gi|224074267|ref|XP_002304329.1| (e_value=2e-85) predicted protein [Populus trichocarpa];; (*TAIR) AT4G10890.1 (e_value=1e-23) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6688833-6692937 FORWARD LENGTH=527;; (*ITAG) Solyc08g082720.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62580096-62589996 transcript_region:SL2.40ch08:62580096..62589996- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018838 Protein of unknown function DUF2439 "; NbS00012858g0002.1 protein AED:0.06 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|209; (*GB) gi|297831372|ref|XP_002883568.1| (e_value=5e-17) hypothetical protein ARALYDRAFT_480010 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G25030.2 (e_value=1e-19) | Symbols: | RING/U-box superfamily protein | chr3:9122650-9123402 FORWARD LENGTH=250;; (*ITAG) Solyc06g007880.1.1 (e_value=6e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:1779132-1779692 transcript_region:SL2.40ch06:1779132..1779692- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MVE2_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00012858g0004.1 protein AED:0.09 eAED:0.24 QI:89|1|0|1|0|0|2|0|155; (*GB) gi|255560117|ref|XP_002521076.1| (e_value=1e-69) Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LJR7|XTH3_ARATH (e_value=3e-57) Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1;; (*TAIR) AT3G25050.1 (e_value=2e-58) | Symbols: XTH3 | xyloglucan endotransglucosylase/hydrolase 3 | chr3:9126872-9128218 FORWARD LENGTH=290;; (*ITAG) Solyc05g053700.1.1 (e_value=4e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62890386-62893341 transcript_region:SL2.40ch05:62890386..62893341+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** D5HRN0_FRAAN); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00051511g0004.1 protein AED:0.21 eAED:0.21 QI:215|1|1|1|1|1|5|581|364; (*GB) gi|118483499|gb|ABK93648.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q9C8G4|PLY4_ARATH (e_value=2e-44) Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1;; (*TAIR) AT3G55140.1 (e_value=1e-173) | Symbols: | Pectin lyase-like superfamily protein | chr3:20438819-20440225 FORWARD LENGTH=331;; (*ITAG) Solyc09g005850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:591874-597023 transcript_region:SL2.40ch09:591874..597023- go_terms:GO:0030570 functional_description:"Pectate lyase 1 (AHRD V1 **** B3SXR0_HEVBR); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0030570 NbS00051511g0005.1 protein AED:0.30 eAED:0.30 QI:454|1|1|1|1|1|2|481|50 NbS00060695g0006.1 protein AED:0.02 eAED:0.02 QI:180|1|1|1|0.5|0.33|3|251|471; (*GB) gi|224109524|ref|XP_002333242.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZU91|E133_ARATH (e_value=1e-121) Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2;; (*TAIR) AT2G05790.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:2199450-2201293 FORWARD LENGTH=472;; (*ITAG) Solyc07g049370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56967150-56969827 transcript_region:SL2.40ch07:56967150..56969827+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase A6 (AHRD V1 ***- B6TIF7_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00060695g0007.1 protein AED:0.21 eAED:0.55 QI:27|0|0|1|0|0.33|3|0|221; (*ITAG) Solyc01g059760.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00017532g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|376; (*GB) gi|3327247|dbj|BAA31690.1| (e_value=0.0) Ntc16 [Nicotiana tabacum];; (*SWP) sp|O04705|GAO1D_WHEAT (e_value=5e-164) Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1;; (*TAIR) AT4G25420.1 (e_value=1e-158) | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12990982-12992409 REVERSE LENGTH=377;; (*ITAG) Solyc01g093980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77317302-77319319 transcript_region:SL2.40ch01:77317302..77319319+ go_terms:GO:0016491,GO:0055114 functional_description:"Gibberellin 20-oxidase 4 (AHRD V1 ***- B2MWW5_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00022208g0008.1 protein AED:0.04 eAED:0.04 QI:0|1|0.91|1|1|1|12|0|1015; (*GB) gi|359476452|ref|XP_002271743.2| (e_value=0.0) PREDICTED: histidine kinase 5-like [Vitis vinifera];; (*SWP) sp|Q3S4A7|AHK5_ARATH (e_value=0.0) Histidine kinase 5 OS=Arabidopsis thaliana GN=AHK5 PE=2 SV=1;; (*TAIR) AT5G10720.1 (e_value=0.0) | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | chr5:3386835-3390541 FORWARD LENGTH=922;; (*ITAG) Solyc08g068960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55242155-55249351 transcript_region:SL2.40ch08:55242155..55249351+ go_terms:GO:0004673 functional_description:"Histidine kinase 1 (AHRD V1 *-** Q9FRY7_MAIZE); contains Interpro domain(s) IPR004358 Signal transduction histidine kinase-related protein, C-terminal "; GO:0004673 NbS00033024g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.85|0.87|1|1|1|8|260|540; (*GB) gi|255554849|ref|XP_002518462.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=0.0) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT4G22010.1 (e_value=0.0) | Symbols: sks4 | SKU5 similar 4 | chr4:11663429-11666463 FORWARD LENGTH=541;; (*ITAG) Solyc02g080670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39423692-39427565 transcript_region:SL2.40ch02:39423692..39427565+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00033024g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|309; (*GB) gi|147795855|emb|CAN76527.1| (e_value=1e-63) hypothetical protein VITISV_010779 [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=3e-29) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G22030.1 (e_value=2e-30) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr4:11672396-11675575 FORWARD LENGTH=626;; (*ITAG) Solyc02g080830.1.1 (e_value=2e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39529511-39530758 transcript_region:SL2.40ch02:39529511..39530758+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00044127g0006.1 protein AED:0.76 eAED:0.87 QI:0|0|0|0.33|0.2|0.33|6|0|151 NbS00044127g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|225426556|ref|XP_002272423.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100246209 [Vitis vinifera];; (*TAIR) AT1G64700.1 (e_value=1e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24039931-24040542 REVERSE LENGTH=203;; (*ITAG) Solyc10g005020.2.1 (e_value=2e-46) genomic_reference:SL2.40ch10 gene_region:21051-22778 transcript_region:SL2.40ch10:21051..22778- functional_description:"Unknown Protein (AHRD V1)"; NbS00056490g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|14484932|gb|AAK62818.1| (e_value=1e-60) fructose-1,6-bisphosphate aldolase [Solanum lycopersicum];; (*SWP) sp|P17784|ALF_ORYSJ (e_value=5e-56) Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2;; (*TAIR) AT2G36460.1 (e_value=3e-55) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc10g083570.1.1 (e_value=2e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62685138-62687861 transcript_region:SL2.40ch10:62685138..62687861- go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- Q308A5_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00028307g0008.1 protein AED:0.18 eAED:0.18 QI:179|1|0.83|1|0.4|0.5|6|0|486; (*GB) gi|225439898|ref|XP_002279479.1| (e_value=7e-155) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=1e-77) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=1e-105) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc10g084280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63223672-63226246 transcript_region:SL2.40ch10:63223672..63226246+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 *--* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00028307g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.9|0.81|0.90|0.9|0.81|11|383|511; (*GB) gi|224140169|ref|XP_002323457.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYP9|IMA2_ORYSJ (e_value=0.0) Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1;; (*TAIR) AT5G03070.1 (e_value=0.0) | Symbols: IMPA-9 | importin alpha isoform 9 | chr5:718468-721395 REVERSE LENGTH=519;; (*ITAG) Solyc10g084270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63212066-63219689 transcript_region:SL2.40ch10:63212066..63219689+ go_terms:GO:0005488 functional_description:"Importin alpha-2 subunit (AHRD V1 ***- B6SUZ9_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016226g0001.1 protein AED:0.26 eAED:0.37 QI:33|-1|0|1|-1|1|1|0|77; (*GB) gi|225451862|ref|XP_002282212.1| (e_value=9e-42) PREDICTED: uncharacterized protein LOC100263512 [Vitis vinifera];; (*SWP) sp|F4K657|BL1S2_ARATH (e_value=1e-29) Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1;; (*TAIR) AT5G49550.1 (e_value=1e-30) | Symbols: BLOS2 | Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. | chr5:20106702-20107156 REVERSE LENGTH=127;; (*ITAG) Solyc02g065690.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:31429678-31431779 transcript_region:SL2.40ch02:31429678..31431779+ go_terms:GO:0043015 functional_description:"Biogenesis of lysosome-related organelles complex-1 subunit 2 (AHRD V1 ***- C1BLD5_OSMMO); contains Interpro domain(s) IPR019269 Biogenesis of lysosome-related organelles complex-1, subunit 2 "; GO:0043015 NbS00016226g0007.1 protein AED:0.31 eAED:0.34 QI:0|0.57|0.5|1|0.57|0.5|8|0|320; (*GB) gi|116787427|gb|ABK24504.1| (e_value=4e-144) unknown [Picea sitchensis];; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=2e-71) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1 PE=2 SV=1;; (*TAIR) AT4G24760.1 (e_value=6e-140) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12761482-12763564 REVERSE LENGTH=365;; (*ITAG) Solyc02g065700.2.1 (e_value=2e-167) genomic_reference:SL2.40ch02 gene_region:31431050-31434593 transcript_region:SL2.40ch02:31431050..31434593- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00032114g0003.1 protein AED:0.45 eAED:0.45 QI:87|0.5|0.33|0.66|1|1|3|89|128; (*GB) gi|326489885|dbj|BAJ94016.1| (e_value=3e-39) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G16870.1 (e_value=4e-36) | Symbols: | mitochondrial 28S ribosomal protein S29-related | chr1:5770964-5773157 REVERSE LENGTH=480;; (*ITAG) Solyc06g082370.2.1 (e_value=8e-55) genomic_reference:SL2.40ch06 gene_region:44499210-44505243 transcript_region:SL2.40ch06:44499210..44505243+ functional_description:"Os07g0202900 protein (Fragment) (AHRD V1 ***- Q0D7X1_ORYSJ); contains Interpro domain(s) IPR019368 Ribosomal protein S23/S29, mitochondrial "; NbS00046078g0002.1 protein AED:0.32 eAED:0.35 QI:270|0.5|0.33|1|1|1|3|0|169; (*GB) gi|2464914|emb|CAB16809.1| (e_value=8e-40) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT4G36660.1 (e_value=3e-42) | Symbols: | Protein of unknown function (DUF1195) | chr4:17285953-17287281 REVERSE LENGTH=179;; (*ITAG) Solyc04g080230.2.1 (e_value=1e-71) genomic_reference:SL2.40ch04 gene_region:62069119-62072066 transcript_region:SL2.40ch04:62069119..62072066+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00010112g0002.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|1|1|2|0|269; (*GB) gi|57012758|sp|Q40478.1|ERF5_TOBAC (e_value=7e-114) RecName: Full=Ethylene-responsive transcription factor 5; AltName: Full=Ethylene-responsive element-binding factor 4; Short=EREBP-4; AltName: Full=Ethylene-responsive element-binding factor 5 homolog; AltName: Full=NtERF4;; (*SWP) sp|Q40478|ERF5_TOBAC (e_value=2e-115) Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1;; (*TAIR) AT5G51190.1 (e_value=4e-41) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:20800708-20801373 REVERSE LENGTH=221;; (*ITAG) Solyc03g093560.1.1 (e_value=3e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:48392056-48392790 transcript_region:SL2.40ch03:48392056..48392790- go_terms:GO:0005515,GO:0003677 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 ***- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003677 NbS00042514g0011.1 protein AED:0.11 eAED:0.11 QI:457|1|1|1|1|1|3|619|434; (*GB) gi|193290722|gb|ACF17669.1| (e_value=0.0) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*SWP) sp|Q1XDM0|ODPA_PORYE (e_value=3e-162) Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1;; (*TAIR) AT1G01090.1 (e_value=0.0) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00042514g0009.1 protein AED:0.11 eAED:0.13 QI:0|0.75|0.8|1|1|1|5|357|430; (*GB) gi|225464728|ref|XP_002264236.1| (e_value=1e-171) PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Vitis vinifera];; (*SWP) sp|O95714|HERC2_HUMAN (e_value=1e-29) E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2;; (*TAIR) AT5G60870.1 (e_value=1e-153) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:24485788-24487771 REVERSE LENGTH=445;; (*ITAG) Solyc07g042970.2.1 (e_value=9e-112) genomic_reference:SL2.40ch07 gene_region:53823782-53826357 transcript_region:SL2.40ch07:53823782..53826357+ go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 **-- B6KH87_TOXGO); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00042514g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|417; (*GB) gi|224113867|ref|XP_002316597.1| (e_value=8e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=6e-32) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT3G17640.1 (e_value=3e-124) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6032393-6033583 FORWARD LENGTH=396;; (*ITAG) Solyc07g042990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53860420-53861646 transcript_region:SL2.40ch07:53860420..53861646- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00042514g0008.1 protein AED:0.43 eAED:0.43 QI:41|0.66|0.25|0.75|1|1|4|0|380; (*GB) gi|255556630|ref|XP_002519349.1| (e_value=2e-163) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0WW40|FBK5_ARATH (e_value=2e-161) F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1;; (*TAIR) AT1G16250.1 (e_value=1e-162) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:5557214-5558697 FORWARD LENGTH=383;; (*ITAG) Solyc07g042960.1.1 (e_value=3e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53814476-53820322 transcript_region:SL2.40ch07:53814476..53820322- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00021580g0004.1 protein AED:0.10 eAED:0.10 QI:63|0|0.5|1|0|0.5|2|0|577; (*GB) gi|359477376|ref|XP_002280144.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=4e-140) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=3e-141) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc06g053850.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33208981-33211612 transcript_region:SL2.40ch06:33208981..33211612- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00021580g0006.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|161; (*GB) gi|4887012|gb|AAD32142.1|AF123504_1 (e_value=3e-100) Nt-iaa2.3 deduced protein [Nicotiana tabacum];; (*SWP) sp|P33077|IAA4_ARATH (e_value=5e-65) Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2;; (*TAIR) AT5G43700.1 (e_value=3e-66) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g083280.2.1 (e_value=5e-81) genomic_reference:SL2.40ch09 gene_region:64330790-64332575 transcript_region:SL2.40ch09:64330790..64332575- go_terms:GO:0017075 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0017075 NbS00008065g0005.1 protein AED:0.31 eAED:0.32 QI:213|0.87|0.77|1|1|1|9|443|287; (*GB) gi|359486366|ref|XP_002278151.2| (e_value=3e-105) PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase-like [Vitis vinifera];; (*TAIR) AT3G56130.1 (e_value=4e-68) | Symbols: | biotin/lipoyl attachment domain-containing protein | chr3:20826852-20829007 FORWARD LENGTH=281;; (*ITAG) Solyc06g050590.2.1 (e_value=2e-153) genomic_reference:SL2.40ch06 gene_region:29782773-29788444 transcript_region:SL2.40ch06:29782773..29788444- go_terms:GO:0005488 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-*- D3PS72_MEIRD); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005488 NbS00004898g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|195617694|gb|ACG30677.1| (e_value=1e-51) histone H4 [Zea mays];; (*SWP) sp|P0CG89|H4_SOYBN (e_value=1e-52) Histone H4 OS=Glycine max PE=3 SV=1;; (*TAIR) AT5G59970.1 (e_value=9e-54) | Symbols: | Histone superfamily protein | chr5:24146352-24146663 REVERSE LENGTH=103;; (*ITAG) Solyc11g066160.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48939641-48939952 transcript_region:SL2.40ch11:48939641..48939952+ go_terms:GO:0043565 functional_description:"Histone H4 (AHRD V1 ***- B6T0P4_MAIZE); contains Interpro domain(s) IPR001951 Histone H4 "; GO:0043565 NbS00004898g0010.1 protein AED:0.19 eAED:0.19 QI:87|0.7|0.72|1|0.9|0.90|11|263|308; (*GB) gi|48093463|gb|AAT40108.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 2 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=7e-116) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT2G28760.3 (e_value=0.0) | Symbols: UXS6 | UDP-XYL synthase 6 | chr2:12336469-12338642 REVERSE LENGTH=343;; (*ITAG) Solyc11g066150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48932337-48936317 transcript_region:SL2.40ch11:48932337..48936317+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_AERHH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00004898g0011.1 protein AED:0.21 eAED:0.21 QI:152|0.57|0.5|1|0.28|0.25|8|289|392; (*GB) gi|225435020|ref|XP_002284171.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262189 [Vitis vinifera];; (*TAIR) AT2G39570.1 (e_value=3e-145) | Symbols: | ACT domain-containing protein | chr2:16507963-16509741 FORWARD LENGTH=411;; (*ITAG) Solyc05g054620.2.1 (e_value=2e-156) genomic_reference:SL2.40ch05 gene_region:63640937-63645239 transcript_region:SL2.40ch05:63640937..63645239+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TDN9_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00021979g0020.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|346; (*GB) gi|347950730|gb|AEP32427.1| (e_value=0.0) ATPase synthase subunit 1, partial (mitochondrion) [Silene vulgaris];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=0.0) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=0.0) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=1e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00021979g0019.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|148; (*GB) gi|164685598|gb|ABY66745.1| (e_value=4e-94) atp1, partial (mitochondrion) [Garrya elliptica];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=2e-94) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=4e-93) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=5e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00021979g0017.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|151; (*GB) gi|28261781|ref|NP_783294.1| (e_value=6e-61) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=2e-62) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=9e-61) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-62) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00021979g0016.1 protein AED:0.49 eAED:0.79 QI:0|0|0|0.5|0|1|2|0|66 NbS00021979g0021.1 protein AED:0.39 eAED:0.44 QI:0|0|0|1|0|0|3|0|160; (*GB) gi|57013984|ref|YP_173456.1| (e_value=2e-68) cytochrome oxidase subunit 3 [Nicotiana tabacum];; (*SWP) sp|P32808|COX3_HELAN (e_value=2e-66) Cytochrome c oxidase subunit 3 OS=Helianthus annuus GN=COX3 PE=3 SV=1;; (*ITAG) ATMG00730.1 (e_value=7e-61) | Symbols: COX3 | cytochrome c oxidase subunit 3 | chrM:218280-219077 FORWARD LENGTH=265;; (*ITAG) Solyc00g019730.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11782543-11782983 transcript_region:SL2.40ch00:11782543..11782983- go_terms:GO:0016020 functional_description:"Cytochrome c oxidase subunit 3 (AHRD V1 ***- Q5M9V7_TOBAC); contains Interpro domain(s) IPR000298 Cytochrome c oxidase, subunit III "; GO:0016020 NbS00021979g0015.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|325610379|gb|ADZ36348.1| (e_value=5e-21) hypothetical protein RF2 [Stewartia rubiginosa];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=5e-22) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=1e-19) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00021979g0022.1 protein AED:0.26 eAED:0.31 QI:180|0|0|1|0|0|2|618|81 NbS00021979g0018.1 protein AED:0.41 eAED:0.46 QI:0|0|0|1|0|0|2|0|81; (*GB) gi|28261781|ref|NP_783294.1| (e_value=3e-15) Ycf2 [Atropa belladonna];; (*SWP) sp|Q8S8U1|YCF2B_ATRBE (e_value=9e-17) Protein ycf2 B OS=Atropa belladonna GN=ycf2-B PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=5e-13) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=3e-17) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00005713g0002.1 protein AED:0.17 eAED:0.17 QI:0|1|0.66|1|1|1|3|0|272; (*GB) gi|359806896|ref|NP_001241320.1| (e_value=2e-81) uncharacterized protein LOC100790724 [Glycine max];; (*SWP) sp|Q9M0K4|LAF1_ARATH (e_value=6e-55) Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2;; (*TAIR) AT5G52260.1 (e_value=5e-61) | Symbols: AtMYB19, MYB19 | myb domain protein 19 | chr5:21220165-21221223 FORWARD LENGTH=268;; (*ITAG) Solyc03g025870.2.1 (e_value=8e-132) genomic_reference:SL2.40ch03 gene_region:7636896-7639652 transcript_region:SL2.40ch03:7636896..7639652- go_terms:GO:0005515,GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LTJ5_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbS00005713g0010.1 protein AED:0.07 eAED:0.07 QI:213|1|1|1|0|0.2|5|312|219; (*GB) gi|224120032|ref|XP_002318225.1| (e_value=2e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=2e-35) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT5G52270.1 (e_value=4e-57) | Symbols: | SNARE-like superfamily protein | chr5:21221643-21222600 REVERSE LENGTH=214;; (*ITAG) Solyc03g025860.2.1 (e_value=7e-127) genomic_reference:SL2.40ch03 gene_region:7634618-7636770 transcript_region:SL2.40ch03:7634618..7636770+ go_terms:GO:0005484 functional_description:"Vesicle-trafficking protein SEC22b (AHRD V1 **-- C1BXX2_ESOLU); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00003680g0015.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|0.66|0.5|4|0|562; (*GB) gi|356557461|ref|XP_003547034.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=2e-163) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT1G07710.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr1:2386275-2387986 REVERSE LENGTH=543;; (*ITAG) Solyc06g075600.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43379496-43381493 transcript_region:SL2.40ch06:43379496..43381493- go_terms:GO:0042803 functional_description:"Ankyrin repeat family protein (AHRD V1 **-- Q9LVG7_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00003680g0003.1 protein AED:0.22 eAED:0.29 QI:681|0.84|0.78|1|0.69|0.64|14|304|514; (*GB) gi|359479011|ref|XP_002284532.2| (e_value=0.0) PREDICTED: probable NOT transcription complex subunit VIP2-like [Vitis vinifera];; (*SWP) sp|Q52JK6|VIP2_NICBE (e_value=0.0) Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1;; (*TAIR) AT1G07705.1 (e_value=2e-153) | Symbols: | NOT2 / NOT3 / NOT5 family | chr1:2382090-2385282 FORWARD LENGTH=546;; (*ITAG) Solyc06g075590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43370736-43379277 transcript_region:SL2.40ch06:43370736..43379277+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 2 (AHRD V1 **-- B6SVB8_MAIZE); contains Interpro domain(s) IPR007282 NOT2/NOT3/NOT5 "; GO:0005634 NbS00003106g0011.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|1|1|2|0|191; (*GB) gi|82623405|gb|ABB87117.1| (e_value=2e-73) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=1e-69) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT4G31700.1 (e_value=1e-69) | Symbols: RPS6, RPS6A | ribosomal protein S6 | chr4:15346306-15347714 REVERSE LENGTH=250;; (*ITAG) Solyc08g074240.2.1 (e_value=1e-75) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00003106g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.75|1|0.90|0.83|12|0|449; (*GB) gi|224065184|ref|XP_002301705.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6HD68|SYV_BACHK (e_value=2e-86) Valine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=valS PE=3 SV=1;; (*TAIR) AT5G16715.1 (e_value=0.0) | Symbols: EMB2247 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr5:5485353-5493229 FORWARD LENGTH=974;; (*ITAG) Solyc12g019110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9128686-9150270 transcript_region:SL2.40ch12:9128686..9150270+ go_terms:GO:0005737,GO:0000166 functional_description:"Valyl-tRNA synthetase (AHRD V1 ***- B9LKX4_CHLSY); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0005737,GO:0000166 NbS00003106g0013.1 protein AED:0.44 eAED:1.00 QI:35|0|0|1|0|0|2|142|20 NbS00003106g0117.1 protein AED:0.14 eAED:0.16 QI:0|0.28|0.12|0.87|0.57|0.37|8|0|381 NbS00003106g0112.1 protein AED:0.07 eAED:0.18 QI:10|0|0.5|1|0|0|2|312|76 NbS00003106g0116.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.8|0|0.4|5|0|276 NbS00003106g0114.1 protein AED:0.07 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|408 NbS00003106g0119.1 protein AED:0.19 eAED:0.19 QI:0|0.2|0|1|0.2|0.16|6|0|271 NbS00011900g0004.1 protein AED:0.11 eAED:0.11 QI:0|0.88|0.83|1|0.94|0.88|18|0|813; (*GB) gi|183238712|gb|ACC60982.1| (e_value=0.0) beta-galactosidase 2 precursor [Petunia x hybrida];; (*SWP) sp|Q9SCU9|BGA13_ARATH (e_value=0.0) Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1;; (*TAIR) AT2G16730.1 (e_value=0.0) | Symbols: BGAL13 | glycosyl hydrolase family 35 protein | chr2:7261986-7266105 REVERSE LENGTH=848;; (*ITAG) Solyc10g055470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52292105-52295932 transcript_region:SL2.40ch10:52292105..52295932- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B2LYJ4_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00035421g0004.1 protein AED:0.23 eAED:0.23 QI:0|0.55|0.7|1|0.44|0.5|10|0|362; (*GB) gi|224083179|ref|XP_002306959.1| (e_value=2e-97) predicted protein [Populus trichocarpa];; (*TAIR) AT2G16980.2 (e_value=5e-63) | Symbols: | Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461;; (*ITAG) Solyc12g094400.1.1 (e_value=5e-141) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62962250-62970152 transcript_region:SL2.40ch12:62962250..62970152+ go_terms:GO:0055085,GO:0016021 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- A6WZJ4_OCHA4); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085,GO:0016021 NbS00035421g0005.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.66|0|0|3|0|80; (*GB) gi|255560457|ref|XP_002521243.1| (e_value=6e-20) tetracycline transporter, putative [Ricinus communis];; (*TAIR) AT2G16970.1 (e_value=2e-20) | Symbols: MEE15 | Major facilitator superfamily protein | chr2:7369549-7375528 FORWARD LENGTH=446;; (*ITAG) Solyc12g094400.1.1 (e_value=4e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62962250-62970152 transcript_region:SL2.40ch12:62962250..62970152+ go_terms:GO:0055085,GO:0016021 functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 **-- A6WZJ4_OCHA4); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085,GO:0016021 NbS00012050g0006.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|0|0|4|0|276; (*GB) gi|255764587|gb|ACU33853.1| (e_value=4e-86) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=6e-39) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=5e-40) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00012050g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|0|0|2|0|254; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-113) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=1e-59) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=9e-61) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007850.2.1 (e_value=2e-120) genomic_reference:SL2.40ch06 gene_region:1750049-1752394 transcript_region:SL2.40ch06:1750049..1752394- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00028074g0002.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.33|1|1|3|0|101; (*GB) gi|225455667|ref|XP_002263450.1| (e_value=4e-42) PREDICTED: MADS-box protein SOC1-like [Vitis vinifera];; (*SWP) sp|O64645|SOC1_ARATH (e_value=7e-38) MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1;; (*TAIR) AT2G45660.1 (e_value=5e-39) | Symbols: AGL20, SOC1, ATSOC1 | AGAMOUS-like 20 | chr2:18807799-18810193 REVERSE LENGTH=214;; (*ITAG) Solyc03g006830.2.1 (e_value=4e-40) genomic_reference:SL2.40ch03 gene_region:1331841-1343493 transcript_region:SL2.40ch03:1331841..1343493+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor 2 (AHRD V1 **** D1MFS7_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00028074g0004.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|62; (*ITAG) Solyc07g032800.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00028198g0003.1 protein AED:0.11 eAED:0.11 QI:185|0.87|0.88|1|0.87|0.77|9|218|537; (*GB) gi|225428247|ref|XP_002282214.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Vitis vinifera];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=0.0) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc01g111970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89869360-89872814 transcript_region:SL2.40ch01:89869360..89872814- go_terms:GO:0055114 functional_description:"Laccase 1a (AHRD V1 **-- B9IG56_POPTR); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00031097g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|121|694; (*GB) gi|356559655|ref|XP_003548114.1| (e_value=4e-85) PREDICTED: trihelix transcription factor GT-2-like [Glycine max];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=2e-45) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT1G76880.1 (e_value=4e-55) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:28865594-28867931 FORWARD LENGTH=603;; (*ITAG) Solyc04g071360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55934673-55937721 transcript_region:SL2.40ch04:55934673..55937721+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK04_9ASPA); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00047835g0005.1 protein AED:0.31 eAED:0.31 QI:256|0.75|0.8|1|0|0.4|5|408|86; (*GB) gi|1351359|sp|P48504.2|QCR6_SOLTU (e_value=3e-33) RecName: Full=Cytochrome b-c1 complex subunit 6; AltName: Full=CR7; AltName: Full=Complex III subunit 6; AltName: Full=Complex III subunit VI; AltName: Full=Mitochondrial hinge protein; AltName: Full=Ubiquinol-cytochrome c reductase complex 7.8 kDa protein;; (*SWP) sp|P48504|QCR6_SOLTU (e_value=9e-35) Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G15120.2 (e_value=6e-33) | Symbols: | Ubiquinol-cytochrome C reductase hinge protein | chr1:5202648-5203950 FORWARD LENGTH=166;; (*ITAG) Solyc09g074870.2.1 (e_value=9e-37) genomic_reference:SL2.40ch09 gene_region:62177324-62184749 transcript_region:SL2.40ch09:62177324..62184749- go_terms:GO:0006122,GO:0005975,GO:0019318 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 *-*- O48971_TOBAC); contains Interpro domain(s) IPR003422 Ubiquinol-cytochrome C reductase hinge "; GO:0006122,GO:0005975,GO:0019318 NbS00047835g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|370; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=1e-111) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q8RXT9|GDL8_ARATH (e_value=8e-99) GDSL esterase/lipase At1g28590 OS=Arabidopsis thaliana GN=At1g28590 PE=2 SV=2;; (*TAIR) AT1G28590.1 (e_value=6e-100) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10047509-10049300 REVERSE LENGTH=403;; (*ITAG) Solyc12g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00037244g0003.1 protein AED:0.26 eAED:0.26 QI:0|1|0.85|1|1|1|7|0|615; (*GB) gi|224069581|ref|XP_002303004.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L612|MACP1_ARATH (e_value=1e-161) MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1;; (*TAIR) AT1G14780.1 (e_value=7e-163) | Symbols: | MAC/Perforin domain-containing protein | chr1:5091020-5093873 FORWARD LENGTH=627;; (*ITAG) Solyc09g098070.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67247340-67252533 transcript_region:SL2.40ch09:67247340..67252533- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA22_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00037244g0008.1 protein AED:0.33 eAED:0.40 QI:0|0.33|0|1|0|0.25|4|0|104; (*ITAG) Solyc09g098080.2.1 (e_value=6e-19) genomic_reference:SL2.40ch09 gene_region:67257042-67260009 transcript_region:SL2.40ch09:67257042..67260009+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00041511g0003.1 protein AED:0.75 eAED:0.82 QI:0|0|0|0.33|1|1|3|0|84 NbS00041511g0002.1 protein AED:0.31 eAED:1.00 QI:0|0|0|1|0|0|2|0|59 NbS00004184g0008.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|177; (*GB) gi|297735265|emb|CBI17627.3| (e_value=1e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=3e-27) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=6e-30) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc01g110890.1.1 (e_value=7e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89146268-89146570 transcript_region:SL2.40ch01:89146268..89146570- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00004184g0005.1 protein AED:0.42 eAED:0.48 QI:390|0.25|0.4|0.6|0.75|0.6|5|0|115 NbS00004184g0001.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|20149046|gb|AAM12778.1| (e_value=2e-25) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=1e-16) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=1e-15) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110800.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:89110185-89110682 transcript_region:SL2.40ch01:89110185..89110682- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00004184g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|20149046|gb|AAM12778.1| (e_value=5e-43) auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P33081|AX15A_SOYBN (e_value=7e-34) Auxin-induced protein 15A OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G38840.1 (e_value=2e-34) | Symbols: | SAUR-like auxin-responsive protein family | chr4:18125174-18125473 REVERSE LENGTH=99;; (*ITAG) Solyc01g110800.2.1 (e_value=4e-54) genomic_reference:SL2.40ch01 gene_region:89110185-89110682 transcript_region:SL2.40ch01:89110185..89110682- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbC24874511g0001.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|134 NbS00043014g0010.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0|2|34|114 NbS00043014g0009.1 protein AED:0.24 eAED:0.25 QI:11|0.8|0.72|1|0.9|0.81|11|0|828; (*GB) gi|47834705|gb|AAT39006.1| (e_value=0.0) AML1 [Solanum tuberosum];; (*SWP) sp|Q6ZI17|OML2_ORYSJ (e_value=0.0) Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2 SV=1;; (*TAIR) AT1G29400.2 (e_value=0.0) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc02g071270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35330503-35339242 transcript_region:SL2.40ch02:35330503..35339242- go_terms:GO:0003723 functional_description:"RNA-binding protein (AHRD V1 *--* A8JCE7_CHLRE); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00043014g0005.1 protein AED:0.03 eAED:0.03 QI:220|0.75|0.8|1|1|1|5|141|1165; (*GB) gi|6708129|gb|AAF25812.1|AF178571_1 (e_value=0.0) phytochrome E [Solanum lycopersicum];; (*SWP) sp|P55004|PHYE_IPONI (e_value=0.0) Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1;; (*TAIR) AT4G18130.1 (e_value=0.0) | Symbols: PHYE | phytochrome E | chr4:10042312-10045948 REVERSE LENGTH=1112;; (*ITAG) Solyc02g071260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35323448-35328928 transcript_region:SL2.40ch02:35323448..35328928+ go_terms:GO:0042802 functional_description:"Phytochrome E"; GO:0042802 NbS00035343g0009.1 protein AED:0.09 eAED:0.11 QI:0|0.66|0.57|1|0.66|0.71|7|0|580; (*GB) gi|356512261|ref|XP_003524839.1| (e_value=0.0) PREDICTED: putative phagocytic receptor 1b-like [Glycine max];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=1e-160) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc04g014570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4832869-4838038 transcript_region:SL2.40ch04:4832869..4838038- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00035343g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.75|0.2|1|1|1|5|0|635; (*GB) gi|225442924|ref|XP_002265172.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268161 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=3e-29) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT4G32250.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15570285-15572528 REVERSE LENGTH=611;; (*ITAG) Solyc01g005030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00041634g0008.1 protein AED:0.20 eAED:0.20 QI:102|1|1|1|1|1|2|598|239; (*GB) gi|225461726|ref|XP_002285515.1| (e_value=5e-83) PREDICTED: uncharacterized protein LOC100245328 [Vitis vinifera];; (*TAIR) AT3G14860.2 (e_value=2e-49) | Symbols: | NHL domain-containing protein | chr3:4998591-5000894 REVERSE LENGTH=493;; (*ITAG) Solyc07g062300.2.1 (e_value=7e-128) genomic_reference:SL2.40ch07 gene_region:62286368-62290258 transcript_region:SL2.40ch07:62286368..62290258- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7L380_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00041634g0009.1 protein AED:0.36 eAED:0.37 QI:0|0|0.5|1|0|0|2|0|70 NbS00011533g0003.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|487; (*GB) gi|18000074|gb|AAL54888.1|AF116915_1 (e_value=0.0) obtusifoliol-14-demethylase [Nicotiana tabacum];; (*SWP) sp|Q9SAA9|CP511_ARATH (e_value=0.0) Sterol 14-demethylase OS=Arabidopsis thaliana GN=CYP51G1 PE=1 SV=1;; (*TAIR) AT1G11680.1 (e_value=0.0) | Symbols: CYP51G1, EMB1738, CYP51A2, CYP51 | CYTOCHROME P450 51G1 | chr1:3938925-3940585 FORWARD LENGTH=488;; (*ITAG) Solyc01g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2241615-2244166 transcript_region:SL2.40ch01:2241615..2244166+ go_terms:GO:0008398 functional_description:"Cytochrome P450"; GO:0008398 NbS00011533g0102.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|105 NbS00011533g0111.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|179 NbS00011533g0122.1 protein AED:0.64 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|147 NbS00011533g0124.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.77|0.88|0.87|0.88|9|0|360 NbS00011533g0119.1 protein AED:0.15 eAED:0.15 QI:10|1|1|1|0|1|2|271|240 NbS00011533g0126.1 protein AED:0.40 eAED:0.40 QI:579|1|1|1|0.25|0|5|482|103 NbS00011533g0110.1 protein AED:0.49 eAED:0.68 QI:0|0.2|0.16|0.83|1|1|6|0|178 NbS00045149g0005.1 protein AED:0.30 eAED:0.30 QI:264|0.78|0.8|0.93|0.85|0.86|15|0|433; (*GB) gi|255583653|ref|XP_002532581.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q2V452|CIPK3_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2;; (*TAIR) AT2G26980.4 (e_value=0.0) | Symbols: CIPK3 | CBL-interacting protein kinase 3 | chr2:11515234-11518426 REVERSE LENGTH=451;; (*ITAG) Solyc11g062410.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:46519142-46525138 transcript_region:SL2.40ch11:46519142..46525138- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 18 (AHRD V1 ***- C4P7W7_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00045149g0002.1 protein AED:0.22 eAED:0.22 QI:228|1|0.66|1|1|1|6|0|414; (*GB) gi|225435985|ref|XP_002272310.1| (e_value=0.0) PREDICTED: protein kinase 2B, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O49840|APK2B_ARATH (e_value=2e-145) Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1;; (*TAIR) AT2G02800.2 (e_value=1e-146) | Symbols: APK2B | protein kinase 2B | chr2:796889-799250 REVERSE LENGTH=426;; (*ITAG) Solyc11g062400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46486889-46489897 transcript_region:SL2.40ch11:46486889..46489897+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00008219g0008.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|522; (*GB) gi|224136730|ref|XP_002322401.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04887|PME2_CITSI (e_value=0.0) Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1;; (*TAIR) AT2G45220.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:18644281-18646394 REVERSE LENGTH=511;; (*ITAG) Solyc03g083870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47349896-47351825 transcript_region:SL2.40ch03:47349896..47351825+ go_terms:GO:0005618,GO:0016887,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9ICT1_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0016887,GO:0030599 NbS00008219g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|530; (*GB) gi|255539749|ref|XP_002510939.1| (e_value=0.0) Pectinesterase-2 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FHN5|PME59_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1;; (*TAIR) AT5G51490.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr5:20913680-20915606 REVERSE LENGTH=536;; (*ITAG) Solyc03g083840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:47305647-47308373 transcript_region:SL2.40ch03:47305647..47308373+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9R9R4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00008219g0006.1 protein AED:0.08 eAED:0.19 QI:27|0.5|0.66|1|0.5|0.66|3|217|133 NbS00008219g0011.1 protein AED:0.16 eAED:0.46 QI:72|0|0|1|0|0|2|0|89 NbS00027632g0007.1 protein AED:0.27 eAED:0.27 QI:0|0.9|0.90|1|0.6|0.81|11|503|489; (*GB) gi|388506214|gb|AFK41173.1| (e_value=1e-169) unknown [Lotus japonicus];; (*SWP) sp|Q8RXK2|SDN3_ARATH (e_value=5e-141) Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1 SV=1;; (*TAIR) AT5G67240.1 (e_value=4e-142) | Symbols: SDN3 | small RNA degrading nuclease 3 | chr5:26824454-26828098 REVERSE LENGTH=782;; (*ITAG) Solyc10g084160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63151765-63156391 transcript_region:SL2.40ch10:63151765..63156391+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease (AHRD V1 *-*- C0S8V0_PARBP); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00027632g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|80; (*ITAG) Solyc05g041970.1.1 (e_value=7e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:53520609-53521281 transcript_region:SL2.40ch05:53520609..53521281- functional_description:"Unknown Protein (AHRD V1)"; NbS00004350g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|128; (*GB) gi|124484377|dbj|BAF46299.1| (e_value=4e-25) extensin like protein [Ipomoea nil];; (*SWP) sp|P14009|14KD_DAUCA (e_value=1e-20) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12510.1 (e_value=4e-25) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129;; (*ITAG) Solyc08g078910.1.1 (e_value=3e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:59745392-59745787 transcript_region:SL2.40ch08:59745392..59745787- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00004350g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|134; (*GB) gi|350539960|ref|NP_001233824.1| (e_value=6e-31) arachidonic acid-induced DEA1 precursor [Solanum lycopersicum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=8e-19) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12510.1 (e_value=2e-21) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7417414-7417803 REVERSE LENGTH=129;; (*ITAG) Solyc08g078900.1.1 (e_value=1e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch08 gene_region:59741865-59742281 transcript_region:SL2.40ch08:59741865..59742281- go_terms:GO:0006869 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6U436_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00010832g0008.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0.5|0.33|3|0|1012; (*GB) gi|255575610|ref|XP_002528705.1| (e_value=0.0) kinase, putative [Ricinus communis];; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=0.0) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=0.0) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc09g015830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:11274733-11276682 transcript_region:SL2.40ch09:11274733..11276682- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00010832g0007.1 protein AED:0.43 eAED:0.45 QI:279|0.4|0.5|1|0.4|0.5|6|0|131; (*GB) gi|24637231|gb|AAN63619.1|AF435818_1 (e_value=1e-50) thioredoxin h-like protein [Nicotiana tabacum];; (*SWP) sp|Q9C9Y6|TRXH9_ARATH (e_value=1e-38) Thioredoxin H9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1;; (*TAIR) AT3G08710.2 (e_value=9e-40) | Symbols: ATH9, TRX H9, TH9 | thioredoxin H-type 9 | chr3:2645590-2646304 FORWARD LENGTH=140;; (*ITAG) Solyc09g015820.2.1 (e_value=2e-49) genomic_reference:SL2.40ch09 gene_region:11222730-11230873 transcript_region:SL2.40ch09:11222730..11230873+ go_terms:GO:0045454 functional_description:"Thioredoxin h-like protein (AHRD V1 ***- Q8H6X3_TOBAC); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbC24763268g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0|2|0|60; (*GB) gi|350535338|ref|NP_001234701.1| (e_value=3e-30) cell-wall invertase [Solanum lycopersicum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=1e-23) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.2 (e_value=2e-19) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19508833 REVERSE LENGTH=524;; (*ITAG) Solyc09g010090.2.1 (e_value=6e-33) genomic_reference:SL2.40ch09 gene_region:3480545-3484159 transcript_region:SL2.40ch09:3480545..3484159+ go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00009169g0005.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|14627103|emb|CAC44035.1| (e_value=2e-67) PSI P700 apoprotein A1 [Daucus carota];; (*SWP) sp|Q0G9W2|PSAA_DAUCA (e_value=3e-65) Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=5e-66) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc09g015340.1.1 (e_value=3e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:8549610-8552077 transcript_region:SL2.40ch09:8549610..8552077+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- C3UNX2_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00009169g0006.1 protein AED:0.10 eAED:0.82 QI:0|0|0|1|0|0|3|0|195 NbS00028594g0003.1 protein AED:0.07 eAED:0.07 QI:336|1|1|1|1|1|3|405|283; (*GB) gi|118490007|gb|ABK96797.1| (e_value=1e-131) NAC domain protein NAC2 [Solanum tuberosum];; (*SWP) sp|O49255|NAC29_ARATH (e_value=6e-110) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=5e-111) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc04g005610.2.1 (e_value=2e-157) genomic_reference:SL2.40ch04 gene_region:405228-406898 transcript_region:SL2.40ch04:405228..406898+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00028819g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|404; (*GB) gi|225448341|ref|XP_002266768.1| (e_value=0.0) PREDICTED: cytochrome P450 734A1 [Vitis vinifera];; (*SWP) sp|O48786|C734A_ARATH (e_value=3e-69) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT5G24910.1 (e_value=1e-167) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc03g095310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49777121-49783215 transcript_region:SL2.40ch03:49777121..49783215- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbC25957760g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|131; (*GB) gi|255546213|ref|XP_002514166.1| (e_value=5e-48) o-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9C5D7|CAMT3_ARATH (e_value=1e-44) Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1;; (*TAIR) AT4G26220.1 (e_value=8e-46) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232;; (*ITAG) Solyc04g063210.2.1 (e_value=2e-62) genomic_reference:SL2.40ch04 gene_region:54468419-54470438 transcript_region:SL2.40ch04:54468419..54470438- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A0SDG2_9CONI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00023513g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|317; (*GB) gi|147797908|emb|CAN69464.1| (e_value=3e-140) hypothetical protein VITISV_023045 [Vitis vinifera];; (*SWP) sp|P22242|DRPE_CRAPL (e_value=3e-95) Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1;; (*TAIR) AT3G62730.1 (e_value=4e-110) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23208003-23209436 REVERSE LENGTH=317;; (*ITAG) Solyc09g014310.2.1 (e_value=1e-151) genomic_reference:SL2.40ch09 gene_region:5821687-5823749 transcript_region:SL2.40ch09:5821687..5823749+ functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 ***- B4G1G1_MAIZE)"; NbS00023513g0009.1 protein AED:0.12 eAED:0.12 QI:0|0.7|0.72|0.90|0.8|0.90|11|632|422; (*GB) gi|255542706|ref|XP_002512416.1| (e_value=2e-171) serine protease htra2, putative [Ricinus communis];; (*SWP) sp|Q3E6S8|DGP14_ARATH (e_value=2e-158) Putative protease Do-like 14 OS=Arabidopsis thaliana GN=DEGP14 PE=3 SV=2;; (*TAIR) AT5G27660.1 (e_value=2e-146) | Symbols: | Trypsin family protein with PDZ domain | chr5:9789835-9792235 REVERSE LENGTH=428;; (*ITAG) Solyc02g082720.2.1 (e_value=4e-36) genomic_reference:SL2.40ch02 gene_region:40943316-40947446 transcript_region:SL2.40ch02:40943316..40947446- go_terms:GO:0004252,GO:0051082 functional_description:"Serine protease Do (AHRD V1 **** B5YER0_DICT6); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0004252,GO:0051082 NbS00021206g0106.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|2|560|84 NbS00021206g0107.1 protein AED:0.33 eAED:0.67 QI:0|0|0|1|0|0|2|0|143 NbS00021206g0108.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|2|0|88 NbS00055258g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|370; (*GB) gi|225464832|ref|XP_002272243.1| (e_value=3e-117) PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera];; (*SWP) sp|Q766C2|NEP2_NEPGR (e_value=3e-33) Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1;; (*TAIR) AT3G52500.1 (e_value=2e-101) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:19465644-19467053 REVERSE LENGTH=469;; (*ITAG) Solyc06g074000.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42131696-42133081 transcript_region:SL2.40ch06:42131696..42133081- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00034113g0009.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|1|0.75|4|0|418; (*GB) gi|224133222|ref|XP_002327990.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LND7|SKI16_ARATH (e_value=1e-158) F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1;; (*TAIR) AT1G06110.1 (e_value=1e-159) | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 | chr1:1853237-1854938 REVERSE LENGTH=436;; (*ITAG) Solyc06g053340.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32579636-32586698 transcript_region:SL2.40ch06:32579636..32586698+ go_terms:GO:0005515 functional_description:"ApaG protein (AHRD V1 *-*- A9F367_SORC5); contains Interpro domain(s) IPR007474 ApaG "; GO:0005515 NbS00034113g0010.1 protein AED:0.31 eAED:0.41 QI:16|0.4|0.33|1|0.6|0.66|6|0|917; (*GB) gi|356538883|ref|XP_003537930.1| (e_value=0.0) PREDICTED: flowering time control protein FPA-like [Glycine max];; (*SWP) sp|Q8LPQ9|FPA_ARATH (e_value=4e-151) Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2;; (*TAIR) AT2G43410.4 (e_value=3e-152) | Symbols: FPA | RNA binding | chr2:18026397-18030989 REVERSE LENGTH=901;; (*ITAG) Solyc06g053320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32552462-32563008 transcript_region:SL2.40ch06:32552462..32563008+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- Q08212_DROME); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal "; GO:0003676,GO:0000166 NbS00024529g0002.1 protein AED:0.14 eAED:0.14 QI:307|0.87|0.88|1|0.87|0.77|9|345|309; (*GB) gi|255560932|ref|XP_002521479.1| (e_value=3e-130) aldose 1-epimerase, putative [Ricinus communis];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=3e-96) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G14500.1 (e_value=6e-121) | Symbols: | aldose 1-epimerase family protein | chr5:4674503-4676368 REVERSE LENGTH=306;; (*ITAG) Solyc02g067860.2.1 (e_value=8e-118) genomic_reference:SL2.40ch02 gene_region:32540131-32544141 transcript_region:SL2.40ch02:32540131..32544141+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7M6K2_ARALY); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00013331g0003.1 protein AED:0.38 eAED:0.42 QI:172|0|0.33|1|0.5|0.66|3|0|173; (*GB) gi|3868853|dbj|BAA34247.1| (e_value=2e-36) GPI-anchored protein [Vigna radiata];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=9e-27) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT5G56170.1 (e_value=5e-36) | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | chr5:22736072-22737108 FORWARD LENGTH=168;; (*ITAG) Solyc12g015970.1.1 (e_value=3e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6001916-6003943 transcript_region:SL2.40ch12:6001916..6003943+ functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00022990g0001.1 protein AED:0.34 eAED:0.34 QI:0|0.44|0.4|1|1|1|10|0|272; (*GB) gi|10177516|dbj|BAB10910.1| (e_value=3e-79) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|Q0VCA5|SAMH1_BOVIN (e_value=6e-24) SAM domain and HD domain-containing protein 1 OS=Bos taurus GN=SAMHD1 PE=2 SV=1;; (*TAIR) AT5G40270.1 (e_value=3e-65) | Symbols: | HD domain-containing metal-dependent phosphohydrolase family protein | chr5:16093394-16097093 REVERSE LENGTH=473;; (*ITAG) Solyc02g086900.2.1 (e_value=1e-67) genomic_reference:SL2.40ch02 gene_region:44070513-44077345 transcript_region:SL2.40ch02:44070513..44077345+ go_terms:GO:0003824 functional_description:"Metal-dependent phosphohydrolase HD domain-containing protein (AHRD V1 **-- D7MJA0_ARALY); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0003824 NbS00031900g0001.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.66|1|1|3|0|156; (*GB) gi|224113845|ref|XP_002316590.1| (e_value=5e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g012010.1.1 (e_value=3e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:4960111-4962202 transcript_region:SL2.40ch11:4960111..4962202+ functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0U4_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; NbS00020295g0006.1 protein AED:0.07 eAED:0.07 QI:394|0.91|0.92|1|0.83|0.84|13|219|469; (*GB) gi|225436964|ref|XP_002276672.1| (e_value=0.0) PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera];; (*SWP) sp|Q9ZVS8|Y1327_ARATH (e_value=0.0) Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2;; (*TAIR) AT1G03270.1 (e_value=0.0) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:799191-802436 FORWARD LENGTH=499;; (*ITAG) Solyc09g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57951952-57962484 transcript_region:SL2.40ch09:57951952..57962484- functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00020295g0005.1 protein AED:0.12 eAED:0.15 QI:154|1|0.88|1|0.87|0.77|9|0|650; (*GB) gi|225436962|ref|XP_002276508.1| (e_value=7e-101) PREDICTED: uncharacterized protein LOC100264786 [Vitis vinifera];; (*TAIR) AT1G03290.2 (e_value=2e-73) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). | chr1:807970-810680 FORWARD LENGTH=571;; (*ITAG) Solyc09g064860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57942081-57949333 transcript_region:SL2.40ch09:57942081..57949333- functional_description:"CUE domain containing protein expressed (AHRD V1 *-*- Q7XG35_ORYSJ); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00003629g0005.1 protein AED:0.02 eAED:0.02 QI:0|1|0.8|1|1|1|5|0|296; (*GB) gi|225433444|ref|XP_002283374.1| (e_value=4e-46) PREDICTED: uncharacterized protein LOC100266687 [Vitis vinifera];; (*TAIR) AT4G13690.1 (e_value=7e-26) | Symbols: | unknown protein; Has 37 Blast hits to 37 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:7953662-7955380 REVERSE LENGTH=249;; (*ITAG) Solyc00g097960.1.1 (e_value=2e-71) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:15669311-15671328 transcript_region:SL2.40ch00:15669311..15671328+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003629g0007.1 protein AED:0.36 eAED:0.46 QI:0|0|0|1|0|0|2|0|115 NbS00003629g0006.1 protein AED:0.38 eAED:0.47 QI:0|0|0|0.5|0|0|2|0|110 NbS00000611g0010.1 protein AED:0.13 eAED:0.14 QI:0|0.33|0|0.75|1|1|4|0|658; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=9e-75) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L440|R1A3_SOLDE (e_value=4e-36) Putative late blight resistance protein homolog R1A-3 OS=Solanum demissum GN=R1A-3 PE=5 SV=2;; (*TAIR) AT5G48620.1 (e_value=2e-27) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc04g007060.2.1 (e_value=7e-118) genomic_reference:SL2.40ch04 gene_region:773650-778371 transcript_region:SL2.40ch04:773650..778371+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00000611g0005.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|297737828|emb|CBI27029.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G13360.1 (e_value=4e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc04g007130.1.1 (e_value=2e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:845520-846077 transcript_region:SL2.40ch04:845520..846077- functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 ***- Q9LUA5_ARATH)"; NbS00000611g0017.1 protein AED:0.26 eAED:0.29 QI:285|0.84|0.92|1|0.84|0.85|14|338|400; (*GB) gi|356575534|ref|XP_003555895.1| (e_value=4e-155) PREDICTED: putative DNA repair protein RAD23-3-like isoform 1 [Glycine max];; (*SWP) sp|Q84L30|RD23D_ARATH (e_value=3e-134) Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2;; (*TAIR) AT5G38470.1 (e_value=3e-135) | Symbols: RAD23D | Rad23 UV excision repair protein family | chr5:15404720-15407500 FORWARD LENGTH=378;; (*ITAG) Solyc04g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:832713-843272 transcript_region:SL2.40ch04:832713..843272- go_terms:GO:0031593,GO:0070628 functional_description:"UV excision repair protein RAD23 (AHRD V1 *--- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593,GO:0070628 NbS00000611g0011.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|90; (*ITAG) Solyc04g015210.2.1 (e_value=4e-15) genomic_reference:SL2.40ch04 gene_region:5390900-5396168 transcript_region:SL2.40ch04:5390900..5396168- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009316g0007.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|3|0|228; (*GB) gi|350536431|ref|NP_001234758.1| (e_value=3e-46) CycD3;3 protein [Solanum lycopersicum];; (*SWP) sp|Q9FGQ7|CCD32_ARATH (e_value=1e-34) Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1;; (*TAIR) AT5G67260.1 (e_value=9e-36) | Symbols: CYCD3;2 | CYCLIN D3;2 | chr5:26836313-26837665 FORWARD LENGTH=367;; (*ITAG) Solyc12g088650.1.1 (e_value=4e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62370474-62372895 transcript_region:SL2.40ch12:62370474..62372895- go_terms:GO:0005634 functional_description:"Cyclin D (AHRD V1 ***- Q8GZU3_9ROSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005634 NbS00009316g0012.1 protein AED:0.29 eAED:0.61 QI:0|0|0.5|1|0|0.5|2|462|204; (*GB) gi|255553595|ref|XP_002517838.1| (e_value=4e-20) conserved hypothetical protein [Ricinus communis]; NbS00009316g0009.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|116; (*GB) gi|57014003|ref|YP_173474.1| (e_value=4e-37) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=3e-23) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00019775g0004.1 protein AED:0.29 eAED:0.29 QI:150|0|0.5|0.5|0|0|2|207|51 NbS00004593g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|546; (*GB) gi|60752251|gb|AAX36074.1| (e_value=0.0) non-intrinsic ABC protein [Nicotiana benthamiana];; (*SWP) sp|Q9ZS97|AB8I_ARATH (e_value=0.0) UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1;; (*TAIR) AT4G04770.1 (e_value=0.0) | Symbols: ATABC1, LAF6, ATNAP1, ABC1 | ATP binding cassette protein 1 | chr4:2427998-2429785 REVERSE LENGTH=557;; (*ITAG) Solyc03g031700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8445318-8448659 transcript_region:SL2.40ch03:8445318..8448659- go_terms:GO:0005515 functional_description:"ABC transporter FeS assembly protein SufB (AHRD V1 ***- C7JBP7_ACEP3); contains Interpro domain(s) IPR010231 SUF system FeS cluster assembly, SufB "; GO:0005515 NbS00028837g0008.1 protein AED:0.31 eAED:0.31 QI:7|0.88|0.83|1|0.52|0.83|18|283|666; (*GB) gi|225456973|ref|XP_002278685.1| (e_value=0.0) PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=6e-63) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT1G19100.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr1:6595560-6601159 FORWARD LENGTH=663;; (*ITAG) Solyc01g099300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81337554-81359465 transcript_region:SL2.40ch01:81337554..81359465- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00028837g0007.1 protein AED:0.40 eAED:0.84 QI:0|0|0|1|0|0|3|0|80 NbS00045793g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0.5|0.5|1|1|2|339|213; (*GB) gi|255544808|ref|XP_002513465.1| (e_value=4e-117) Protein MSF1, putative [Ricinus communis];; (*SWP) sp|Q54G07|SLMO_DICDI (e_value=2e-30) Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1;; (*TAIR) AT5G13070.1 (e_value=3e-115) | Symbols: | MSF1-like family protein | chr5:4148216-4149062 FORWARD LENGTH=183;; (*ITAG) Solyc12g100050.1.1 (e_value=9e-128) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65284796-65285353 transcript_region:SL2.40ch12:65284796..65285353- functional_description:"Slowmo homolog 2 (AHRD V1 **-- B5XGX8_SALSA); contains Interpro domain(s) IPR006797 PRELI/MSF1 "; NbS00045793g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|217; (*GB) gi|222822653|gb|ACM68439.1| (e_value=2e-89) stress-associated protein 2 [Solanum lycopersicum];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=2e-73) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=2e-53) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc11g061770.1.1 (e_value=4e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:45480136-45480648 transcript_region:SL2.40ch11:45480136..45480648- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AHRD V1 ***- SAP8_ORYSJ); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00052060g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0.5|2|188|86; (*GB) gi|255583555|ref|XP_002532534.1| (e_value=2e-18) kinesin light chain, putative [Ricinus communis];; (*TAIR) AT5G37590.1 (e_value=1e-12) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:14927403-14932709 REVERSE LENGTH=551;; (*ITAG) Solyc11g011390.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4461423-4472090 transcript_region:SL2.40ch11:4461423..4472090+ go_terms:GO:0005488 functional_description:"TPR repeat Kinesin light chain Kinesin light chain (AHRD V1 *--- Q4C9Q1_CROWT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006602g0013.1 protein AED:0.21 eAED:0.21 QI:113|1|1|1|0|0.33|3|271|135; (*GB) gi|224086675|ref|XP_002307927.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S8T8|PCR10_ARATH (e_value=3e-59) Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana GN=PCR10 PE=2 SV=1;; (*TAIR) AT2G40935.2 (e_value=4e-61) | Symbols: | PLAC8 family protein | chr2:17083336-17084216 FORWARD LENGTH=166;; (*ITAG) Solyc10g081410.1.1 (e_value=5e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61807080-61809278 transcript_region:SL2.40ch10:61807080..61809278+ functional_description:"Cell number regulator 5 (AHRD V1 **-- B4FF80_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00006602g0010.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.4|1|0.75|0.6|5|0|364; (*GB) gi|225439195|ref|XP_002269509.1| (e_value=8e-163) PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=2e-140) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=1e-141) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc10g081420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61809625-61812997 transcript_region:SL2.40ch10:61809625..61812997- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00006602g0012.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0.5|2|0|278; (*GB) gi|225439195|ref|XP_002269509.1| (e_value=1e-78) PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=7e-52) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=5e-53) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc01g068360.2.1 (e_value=1e-107) genomic_reference:SL2.40ch01 gene_region:69962432-69966964 transcript_region:SL2.40ch01:69962432..69966964+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00006602g0011.1 protein AED:0.47 eAED:0.50 QI:0|0|0|1|0|0|2|0|83; (*GB) gi|255569464|ref|XP_002525699.1| (e_value=5e-15) leucine-rich repeat protein, putative [Ricinus communis];; (*ITAG) Solyc10g081420.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61809625-61812997 transcript_region:SL2.40ch10:61809625..61812997- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00046219g0009.1 protein AED:0.12 eAED:0.12 QI:172|0.75|0.66|1|0.5|0.55|9|591|439; (*GB) gi|225461677|ref|XP_002285458.1| (e_value=0.0) PREDICTED: rab3 GTPase-activating protein non-catalytic subunit [Vitis vinifera];; (*SWP) sp|Q9H2M9|RBGPR_HUMAN (e_value=6e-15) Rab3 GTPase-activating protein non-catalytic subunit OS=Homo sapiens GN=RAB3GAP2 PE=1 SV=1;; (*TAIR) AT3G14910.1 (e_value=0.0) | Symbols: | unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr3:5015432-5017566 FORWARD LENGTH=455;; (*ITAG) Solyc07g062450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62408537-62412999 transcript_region:SL2.40ch07:62408537..62412999+ functional_description:"RAB3 GTPase activating protein subunit 2 (Non-catalytic) (AHRD V1 ***- A6H8V0_HUMAN)"; NbS00046219g0006.1 protein AED:0.14 eAED:0.14 QI:66|1|0.66|1|1|0.66|3|100|57; (*GB) gi|297830036|ref|XP_002882900.1| (e_value=2e-22) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G14890.1 (e_value=1e-24) | Symbols: | phosphoesterase | chr3:5008751-5013060 FORWARD LENGTH=694;; (*ITAG) Solyc07g062430.2.1 (e_value=1e-30) genomic_reference:SL2.40ch07 gene_region:62398736-62405665 transcript_region:SL2.40ch07:62398736..62405665+ go_terms:GO:0008270 functional_description:"Polynucleotide kinase 3&apos-phosphatase (AHRD V1 *--- Q6AXV0_RAT); contains Interpro domain(s) IPR015636 Polynucleotide kinase 3, phosphatase "; GO:0008270 NbS00046219g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|597; (*GB) gi|225461679|ref|XP_002283164.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248749 [Vitis vinifera];; (*TAIR) AT3G14900.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 17135 Blast hits to 10204 proteins in 644 species: Archae - 47; Bacteria - 1684; Metazoa - 5536; Fungi - 2506; Plants - 1043; Viruses - 361; Other Eukaryotes - 5958 (source: NCBI BLink). | chr3:5013442-5015277 REVERSE LENGTH=611;; (*ITAG) Solyc07g062440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62405910-62407700 transcript_region:SL2.40ch07:62405910..62407700- functional_description:"Genomic DNA chromosome 3 TAC clone K15M2 (AHRD V1 ***- Q9LKB4_ARATH)"; NbS00046219g0010.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|4|0|425; (*GB) gi|350535491|ref|NP_001234709.1| (e_value=0.0) peptide N-glycanase precursor [Solanum lycopersicum];; (*SWP) sp|P81898|PNAA_PRUDU (e_value=0.0) Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A OS=Prunus dulcis PE=1 SV=2;; (*TAIR) AT3G14920.1 (e_value=1e-176) | Symbols: | Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein | chr3:5018275-5020104 FORWARD LENGTH=609;; (*ITAG) Solyc12g014270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5091696-5093344 transcript_region:SL2.40ch12:5091696..5093344- functional_description:"Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A (AHRD V1 ***- B2W0X1_PYRTR)"; NbS00029911g0010.1 protein AED:0.09 eAED:0.10 QI:0|0|0|0.75|0.66|0.5|4|0|294; (*GB) gi|1174466|sp|P46253.1|STAD_SOLTU (e_value=5e-155) RecName: Full=Acyl-[acyl-carrier-protein] desaturase, chloroplastic; AltName: Full=Stearoyl-ACP desaturase; Flags: Precursor;; (*SWP) sp|P46253|STAD_SOLTU (e_value=2e-156) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G43710.1 (e_value=8e-143) | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr2:18120107-18122495 FORWARD LENGTH=401;; (*ITAG) Solyc11g008680.1.1 (e_value=6e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2859715-2863853 transcript_region:SL2.40ch11:2859715..2863853+ go_terms:GO:0055114 functional_description:"Acyl- (AHRD V1 ***- Q4JIJ4_9ROSI); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0055114 NbS00061923g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|225450561|ref|XP_002281846.1| (e_value=1e-42) PREDICTED: transcription factor bHLH149 [Vitis vinifera];; (*SWP) sp|O80482|BH149_ARATH (e_value=4e-32) Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1;; (*TAIR) AT1G09250.1 (e_value=3e-33) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:2989509-2990132 FORWARD LENGTH=207;; (*ITAG) Solyc01g100660.2.1 (e_value=2e-89) genomic_reference:SL2.40ch01 gene_region:82403861-82404954 transcript_region:SL2.40ch01:82403861..82404954+ functional_description:"Transcription factor (AHRD V1 ***- D7L4N5_ARALY)"; NbS00023988g0005.1 protein AED:0.19 eAED:0.21 QI:195|0.33|0.5|1|0.33|0.5|4|746|229; (*GB) gi|255626663|gb|ACU13676.1| (e_value=5e-69) unknown [Glycine max];; (*SWP) sp|Q9XIK3|ISCAP_ARATH (e_value=1e-65) Iron-sulfur assembly protein IscA, chloroplastic OS=Arabidopsis thaliana GN=ISCA PE=2 SV=2;; (*TAIR) AT1G10500.1 (e_value=9e-67) | Symbols: ATCPISCA, CPISCA | chloroplast-localized ISCA-like protein | chr1:3460160-3461340 REVERSE LENGTH=180;; (*ITAG) Solyc05g051700.2.1 (e_value=5e-84) genomic_reference:SL2.40ch05 gene_region:61252478-61256747 transcript_region:SL2.40ch05:61252478..61256747- go_terms:GO:0005515,GO:0005198 functional_description:"Iron--sulfur cluster insertion protein erpA (AHRD V1 ***- ERPA_STRMK); contains Interpro domain(s) IPR016092 FeS cluster insertion "; GO:0005515,GO:0005198 NbS00049814g0005.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.75|1|1|1|12|318|800; (*GB) gi|255540279|ref|XP_002511204.1| (e_value=0.0) Conserved oligomeric Golgi complex component, putative [Ricinus communis];; (*SWP) sp|Q921L5|COG2_MOUSE (e_value=1e-79) Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=2;; (*TAIR) AT4G24840.1 (e_value=0.0) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12796525-12800926 REVERSE LENGTH=756;; (*ITAG) Solyc08g006660.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1243949-1246177 transcript_region:SL2.40ch08:1243949..1246177+ go_terms:GO:0008565,GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 2 (AHRD V1 ***- COG2_HUMAN); contains Interpro domain(s) IPR009316 COG complex component, COG2 "; GO:0008565,GO:0005515 NbS00052109g0004.1 protein AED:0.04 eAED:0.04 QI:11|1|1|1|0.6|0.83|6|255|574; (*GB) gi|225445254|ref|XP_002281040.1| (e_value=5e-106) PREDICTED: uncharacterized protein LOC100245756 [Vitis vinifera];; (*SWP) sp|Q941B6|UBC37_ARATH (e_value=1e-79) Probable ubiquitin-conjugating enzyme E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=2;; (*TAIR) AT3G24515.1 (e_value=9e-81) | Symbols: UBC37 | ubiquitin-conjugating enzyme 37 | chr3:8934569-8936207 REVERSE LENGTH=409;; (*ITAG) Solyc07g024070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:24142104-24145525 transcript_region:SL2.40ch07:24142104..24145525+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 T (AHRD V1 *-*- C1BZC6_ESOLU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00007587g0004.1 protein AED:0.17 eAED:0.20 QI:0|0|0|1|1|1|5|0|689; (*GB) gi|225440234|ref|XP_002278622.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267097 [Vitis vinifera];; (*TAIR) AT2G40980.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:17102090-17104443 FORWARD LENGTH=617;; (*ITAG) Solyc10g077020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59263762-59269147 transcript_region:SL2.40ch10:59263762..59269147+ go_terms:GO:0006468 functional_description:"AT2G40980-like protein (Fragment) (AHRD V1 *-*- D6PPH2_9BRAS); contains Interpro domain(s) IPR011009 Protein kinase-like "; GO:0006468 NbS00033059g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|369; (*GB) gi|224099843|ref|XP_002311642.1| (e_value=1e-120) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LUH8|HFA6B_ARATH (e_value=2e-111) Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1;; (*TAIR) AT3G22830.1 (e_value=2e-112) | Symbols: AT-HSFA6B, HSFA6B | heat shock transcription factor A6B | chr3:8078981-8080895 FORWARD LENGTH=406;; (*ITAG) Solyc09g082670.2.1 (e_value=4e-172) genomic_reference:SL2.40ch09 gene_region:63781968-63784228 transcript_region:SL2.40ch09:63781968..63784228+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00000249g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0.5|1|0.33|0.5|4|214|277; (*GB) gi|388514791|gb|AFK45457.1| (e_value=8e-84) unknown [Lotus japonicus];; (*SWP) sp|Q6NM73|CRR3_ARATH (e_value=2e-73) Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1;; (*TAIR) AT1G04520.1 (e_value=2e-74) | Symbols: PDLP2 | plasmodesmata-located protein 2 | chr1:1231852-1233787 FORWARD LENGTH=307;; (*ITAG) Solyc03g005690.2.1 (e_value=3e-108) genomic_reference:SL2.40ch03 gene_region:492526-495987 transcript_region:SL2.40ch03:492526..495987+ functional_description:"Cysteine-rich repeat secretory protein 3 (AHRD V1 ***- CRR3_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; NbS00028251g0005.1 protein AED:0.06 eAED:0.08 QI:0|0.25|0.2|0.8|0.75|0.6|5|0|338; (*GB) gi|359478373|ref|XP_002282660.2| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100267248 [Vitis vinifera];; (*TAIR) AT1G51405.1 (e_value=6e-37) | Symbols: | myosin-related | chr1:19057780-19059582 FORWARD LENGTH=487;; (*ITAG) Solyc11g065630.1.1 (e_value=5e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48235984-48241367 transcript_region:SL2.40ch11:48235984..48241367+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004691g0007.1 protein AED:0.00 eAED:0.00 QI:94|1|1|1|0|0|2|215|99; (*ITAG) Solyc03g031520.2.1 (e_value=3e-16) genomic_reference:SL2.40ch03 gene_region:8310784-8311569 transcript_region:SL2.40ch03:8310784..8311569- functional_description:"Fruit-specific protein (AHRD V1 ***- FSPM_SOLLC); contains Interpro domain(s) IPR009632 Putative metallocarboxypeptidase inhibitor "; NbS00004691g0006.1 protein AED:0.20 eAED:0.20 QI:154|1|1|1|0.33|0.5|4|212|95; (*GB) gi|255551062|ref|XP_002516579.1| (e_value=2e-57) 60S ribosomal protein L37, putative [Ricinus communis];; (*SWP) sp|Q8LFH7|RL371_ARATH (e_value=1e-56) 60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1;; (*TAIR) AT1G15250.1 (e_value=8e-58) | Symbols: | Zinc-binding ribosomal protein family protein | chr1:5248825-5249381 REVERSE LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=3e-63) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00031074g0001.1 protein AED:0.16 eAED:0.51 QI:0|0|0|1|1|1|2|0|236; (*GB) gi|225442975|ref|XP_002267925.1| (e_value=1e-63) PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SSQ8|HS26M_ARATH (e_value=3e-57) 26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1;; (*TAIR) AT1G52560.1 (e_value=3e-58) | Symbols: | HSP20-like chaperones superfamily protein | chr1:19574783-19575766 REVERSE LENGTH=232;; (*ITAG) Solyc12g042830.1.1 (e_value=1e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43709595-43709834 transcript_region:SL2.40ch12:43709595..43709834- functional_description:"class I heat shock protein (AHRD V1 -**- Q69BI7_CARPA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00009609g0002.1 protein AED:0.18 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|135 NbS00023324g0005.1 protein AED:0.28 eAED:0.27 QI:140|0.83|0.71|1|0.83|0.71|7|155|525; (*GB) gi|224055551|ref|XP_002298535.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK94|MDAR2_ARATH (e_value=0.0) Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1;; (*TAIR) AT3G27820.1 (e_value=0.0) | Symbols: ATMDAR4, MDAR4 | monodehydroascorbate reductase 4 | chr3:10315249-10317881 FORWARD LENGTH=488;; (*ITAG) Solyc02g086710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43930486-43935980 transcript_region:SL2.40ch02:43930486..43935980+ go_terms:GO:0005524,GO:0016656 functional_description:"Monodehydroascorbate reductase (NADH)-like protein (AHRD V1 **** Q0WUJ1_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0005524,GO:0016656 NbS00006391g0007.1 protein AED:0.11 eAED:0.12 QI:168|1|0.71|1|1|1|7|0|804; (*GB) gi|224115438|ref|XP_002332135.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10180.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:3338381-3341494 REVERSE LENGTH=769;; (*ITAG) Solyc02g069080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33622504-33631103 transcript_region:SL2.40ch02:33622504..33631103- functional_description:"Unknown Protein (AHRD V1)"; NbS00006391g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0.5|1|1|1|4|116|161; (*GB) gi|186506604|ref|NP_181476.2| (e_value=1e-60) ribonuclease H2 subunit C [Arabidopsis thaliana];; (*TAIR) AT2G39440.1 (e_value=3e-63) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:16468220-16469113 REVERSE LENGTH=162;; (*ITAG) Solyc02g069070.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:33618808-33621536 transcript_region:SL2.40ch02:33618808..33621536- functional_description:"Ribonuclease H2 subunit C (AHRD V1 ***- C0H7J5_SALSA); contains Interpro domain(s) IPR013924 Ribonuclease H2, subunit C "; NbS00035670g0011.1 protein AED:0.20 eAED:0.21 QI:0|0.5|0.33|0.66|1|1|3|0|531; (*GB) gi|298205228|emb|CBI17287.3| (e_value=2e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43490.1 (e_value=1e-19) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469256 REVERSE LENGTH=185;; (*ITAG) Solyc12g098470.1.1 (e_value=2e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64302382-64313454 transcript_region:SL2.40ch12:64302382..64313454- functional_description:"At5g43490-like protein (Fragment) (AHRD V1 *-*- Q6XWB0_ARATH)"; NbS00035670g0012.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|0.66|0|0.33|3|36|259; (*GB) gi|224055853|ref|XP_002298686.1| (e_value=1e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9D099|ACER3_MOUSE (e_value=8e-33) Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1;; (*TAIR) AT4G22330.1 (e_value=2e-151) | Symbols: ATCES1 | Alkaline phytoceramidase (aPHC) | chr4:11798483-11799549 FORWARD LENGTH=255;; (*ITAG) Solyc05g053740.2.1 (e_value=5e-174) genomic_reference:SL2.40ch05 gene_region:62913758-62915753 transcript_region:SL2.40ch05:62913758..62915753- go_terms:GO:0005515,GO:0070774 functional_description:"Alkaline ceramidase (AHRD V1 ***- Q17KM2_AEDAE); contains Interpro domain(s) IPR008901 Alkaline phytoceramidase "; GO:0005515,GO:0070774 NbS00035670g0014.1 protein AED:0.09 eAED:0.09 QI:0|1|0.77|1|0.25|0.33|9|0|376; (*GB) gi|225447174|ref|XP_002271752.1| (e_value=0.0) PREDICTED: triacylglycerol lipase 2 [Vitis vinifera];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=1e-137) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=1e-138) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc05g053750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62920546-62926504 transcript_region:SL2.40ch05:62920546..62926504+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00035670g0013.1 protein AED:0.31 eAED:0.31 QI:135|1|1|1|1|1|2|404|197; (*GB) gi|113374278|gb|ABI34703.1| (e_value=8e-81) DnaJ-like protein isoform [Solanum phureja];; (*SWP) sp|Q9SDN0|DNJ20_ARATH (e_value=6e-63) Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2;; (*TAIR) AT4G13830.2 (e_value=4e-64) | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577 FORWARD LENGTH=197;; (*ITAG) Solyc05g053760.2.1 (e_value=5e-89) genomic_reference:SL2.40ch05 gene_region:62934657-62937298 transcript_region:SL2.40ch05:62934657..62937298+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 20 (AHRD V1 ***- B6U349_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00019841g0012.1 protein AED:0.11 eAED:0.14 QI:0|0.25|0|0.8|1|1|5|0|650; (*GB) gi|225431865|ref|XP_002275330.1| (e_value=0.0) PREDICTED: COBRA-like protein 7 [Vitis vinifera];; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=0.0) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2;; (*TAIR) AT4G16120.1 (e_value=0.0) | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661;; (*ITAG) Solyc09g075540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62731615-62733737 transcript_region:SL2.40ch09:62731615..62733737- go_terms:GO:0030246 functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; GO:0030246 NbS00019841g0004.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|22331906|ref|NP_191825.2| (e_value=0.0) putative galacturonosyltransferase-like 7 [Arabidopsis thaliana];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=0.0) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=0.0) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc09g075560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62750328-62751431 transcript_region:SL2.40ch09:62750328..62751431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00019841g0018.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.5|1|0.66|0.5|4|0|1239; (*GB) gi|255564292|ref|XP_002523143.1| (e_value=0.0) Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis];; (*SWP) sp|Q9SRW9|CSLD5_ARATH (e_value=0.0) Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1;; (*TAIR) AT1G02730.1 (e_value=0.0) | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like D5 | chr1:594697-598473 REVERSE LENGTH=1181;; (*ITAG) Solyc09g075550.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62738261-62743099 transcript_region:SL2.40ch09:62738261..62743099+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like D6 (AHRD V1 **** Q09HT5_PHYPA); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00019841g0013.1 protein AED:0.48 eAED:0.84 QI:0|0|0|1|1|1|2|0|86; (*ITAG) Solyc09g075530.2.1 (e_value=6e-26) genomic_reference:SL2.40ch09 gene_region:62727047-62731274 transcript_region:SL2.40ch09:62727047..62731274+ go_terms:GO:0005484 functional_description:"Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) (AHRD V1 **** D7G2Z0_ECTSI); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00009832g0008.1 protein AED:0.14 eAED:0.14 QI:0|1|0.87|1|0.85|0.75|8|265|249; (*GB) gi|255586521|ref|XP_002533899.1| (e_value=3e-155) TGF-beta-inducible nuclear protein, putative [Ricinus communis];; (*SWP) sp|Q54GN8|NSA2_DICDI (e_value=1e-123) Ribosome biogenesis protein NSA2 homolog OS=Dictyostelium discoideum GN=nsa2 PE=3 SV=1;; (*TAIR) AT5G06360.1 (e_value=3e-151) | Symbols: | Ribosomal protein S8e family protein | chr5:1944835-1946512 FORWARD LENGTH=260;; (*ITAG) Solyc09g098360.2.1 (e_value=7e-164) genomic_reference:SL2.40ch09 gene_region:67468841-67472791 transcript_region:SL2.40ch09:67468841..67472791+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosome biogenesis protein NSA2 (AHRD V1 **** D0MUX0_PHYIN); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00009832g0009.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.58|1|0.56|0.64|17|0|1002; (*GB) gi|225433682|ref|XP_002265776.1| (e_value=0.0) PREDICTED: fanconi-associated nuclease 1 homolog [Vitis vinifera];; (*SWP) sp|Q5XVJ4|FAN1_ARATH (e_value=0.0) Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana GN=At1g48360 PE=2 SV=2;; (*TAIR) AT1G48360.2 (e_value=0.0) | Symbols: | zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides | chr1:17868661-17872946 FORWARD LENGTH=891;; (*ITAG) Solyc09g098370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67473224-67484653 transcript_region:SL2.40ch09:67473224..67484653+ go_terms:GO:0005515 functional_description:"VRR-NUC domain-containing protein (AHRD V1 ***- C5GD44_AJEDR); contains Interpro domain(s) IPR014883 VRR-NUC "; GO:0005515 NbS00028697g0006.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|666; (*GB) gi|225444832|ref|XP_002279061.1| (e_value=2e-28) PREDICTED: uncharacterized protein LOC100261010 [Vitis vinifera];; (*TAIR) AT5G57070.1 (e_value=4e-23) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:23096221-23097948 FORWARD LENGTH=575;; (*ITAG) Solyc07g041070.2.1 (e_value=8e-168) genomic_reference:SL2.40ch07 gene_region:49074742-49076825 transcript_region:SL2.40ch07:49074742..49076825+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025989g0002.1 protein AED:0.08 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|359475298|ref|XP_003631642.1| (e_value=4e-29) PREDICTED: organ-specific protein S2-like [Vitis vinifera];; (*SWP) sp|P17772|OSS2_PEA (e_value=7e-19) Organ-specific protein S2 OS=Pisum sativum PE=2 SV=1;; (*ITAG) Solyc10g009150.2.1 (e_value=1e-40) genomic_reference:SL2.40ch10 gene_region:3151104-3152540 transcript_region:SL2.40ch10:3151104..3152540+ functional_description:"Organ-specific protein S2 (AHRD V1 ***- OSS2_PEA)"; NbS00026505g0013.1 protein AED:0.11 eAED:0.12 QI:0|0.83|0.57|0.85|1|0.85|7|0|632; (*GB) gi|10047219|dbj|BAB13368.1| (e_value=0.0) L-galactono-1,4-lactone dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SU56|GLDH_ARATH (e_value=0.0) L-galactono-1,4-lactone dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=GLDH PE=1 SV=1;; (*TAIR) AT3G47930.1 (e_value=0.0) | Symbols: ATGLDH, GLDH | L-galactono-1,4-lactone dehydrogenase | chr3:17684500-17687426 FORWARD LENGTH=610;; (*ITAG) Solyc10g079470.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:60341212-60348821 transcript_region:SL2.40ch10:60341212..60348821- go_terms:GO:0016633,GO:0080049 functional_description:"L-galactono-1,4-lactone dehydrogenase"; GO:0016633,GO:0080049 NbS00026505g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225451966|ref|XP_002283242.1| (e_value=1e-37) PREDICTED: transcription factor AS1 [Vitis vinifera];; (*SWP) sp|O80931|AS1_ARATH (e_value=5e-34) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1;; (*TAIR) AT2G37630.1 (e_value=4e-35) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=7e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00026505g0010.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|0|0|3|0|159 NbS00026505g0011.1 protein AED:0.61 eAED:0.62 QI:0|0|0|1|0|0|2|0|68 NbS00026505g0012.1 protein AED:0.48 eAED:1.00 QI:0|0|0|0.66|0|0|3|0|63 NbS00012850g0018.1 protein AED:0.19 eAED:0.20 QI:219|0.87|0.77|1|0.87|0.77|9|0|589; (*GB) gi|13560977|gb|AAK30294.1|AF353207_1 (e_value=0.0) beta-amylase [Castanea crenata];; (*SWP) sp|P10538|AMYB_SOYBN (e_value=0.0) Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3;; (*TAIR) AT2G32290.1 (e_value=0.0) | Symbols: BMY5, BAM6 | beta-amylase 6 | chr2:13714643-13716906 REVERSE LENGTH=577;; (*ITAG) Solyc07g052690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58467382-58471454 transcript_region:SL2.40ch07:58467382..58471454+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** Q9AT14_CASCR); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00012850g0016.1 protein AED:0.21 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|181; (*GB) gi|224093232|ref|XP_002309845.1| (e_value=7e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41001|BCP_PEA (e_value=4e-22) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT2G32300.1 (e_value=1e-34) | Symbols: UCC1 | uclacyanin 1 | chr2:13722510-13723464 FORWARD LENGTH=261;; (*ITAG) Solyc07g052660.1.1 (e_value=9e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58437978-58438899 transcript_region:SL2.40ch07:58437978..58438899+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00012850g0017.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|69 NbS00012850g0004.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|1|1|2|0|255; (*GB) gi|225447372|ref|XP_002280993.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100256871 [Vitis vinifera];; (*ITAG) Solyc07g052680.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58459308-58459763 transcript_region:SL2.40ch07:58459308..58459763- functional_description:"Unknown Protein (AHRD V1)"; NbS00012850g0023.1 protein AED:0.25 eAED:0.25 QI:351|0.66|1|1|0.66|0.75|4|336|217; (*GB) gi|359485584|ref|XP_002274829.2| (e_value=2e-94) PREDICTED: transcription factor ILR3-like [Vitis vinifera];; (*SWP) sp|Q9FH37|ILR3_ARATH (e_value=1e-66) Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1;; (*TAIR) AT5G54680.1 (e_value=8e-68) | Symbols: ILR3, bHLH105 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:22217270-22218993 FORWARD LENGTH=234;; (*ITAG) Solyc07g052670.2.1 (e_value=3e-144) genomic_reference:SL2.40ch07 gene_region:58439470-58444048 transcript_region:SL2.40ch07:58439470..58444048- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00013072g0005.1 protein AED:0.30 eAED:0.35 QI:76|0|0.5|1|0|0|2|0|111; (*GB) gi|224074813|ref|XP_002304461.1| (e_value=9e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZQ5|SPXM3_ARATH (e_value=3e-52) SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2;; (*TAIR) AT4G22990.1 (e_value=3e-53) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr4:12048240-12050984 REVERSE LENGTH=699;; (*ITAG) Solyc12g056440.1.1 (e_value=5e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47720136-47731546 transcript_region:SL2.40ch12:47720136..47731546+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_DANRE); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0055085 NbS00020694g0008.1 protein AED:0.05 eAED:0.05 QI:178|0.83|0.71|1|1|1|7|364|318; (*GB) gi|224098202|ref|XP_002311135.1| (e_value=8e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q99685|MGLL_HUMAN (e_value=2e-29) Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2;; (*TAIR) AT2G39420.1 (e_value=1e-153) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:16460442-16462872 FORWARD LENGTH=317;; (*ITAG) Solyc04g010250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3577656-3583500 transcript_region:SL2.40ch04:3577656..3583500+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9M3D1_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00020694g0002.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|1|1|2|0|1227; (*GB) gi|374095609|gb|AEY85032.1| (e_value=0.0) spliceosomal-like protein [Camellia sinensis];; (*SWP) sp|Q921M3|SF3B3_MOUSE (e_value=0.0) Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1;; (*TAIR) AT3G55200.1 (e_value=0.0) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214;; (*ITAG) Solyc04g010260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3583577-3588628 transcript_region:SL2.40ch04:3583577..3588628- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor RSE1 (AHRD V1 ***- A8N7S1_COPC7); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515 NbS00045773g0003.1 protein AED:0.34 eAED:0.37 QI:0|0.2|0.16|1|1|1|6|0|538; (*GB) gi|225445873|ref|XP_002276194.1| (e_value=2e-125) PREDICTED: probable WRKY transcription factor 32 [Vitis vinifera];; (*SWP) sp|P59583|WRK32_ARATH (e_value=3e-94) Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1;; (*TAIR) AT4G30935.1 (e_value=2e-95) | Symbols: WRKY32, ATWRKY32 | WRKY DNA-binding protein 32 | chr4:15051916-15053908 REVERSE LENGTH=466;; (*ITAG) Solyc07g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:518591-524775 transcript_region:SL2.40ch07:518591..524775- go_terms:GO:0005515,GO:0003677 functional_description:"WRKY transcription factor (AHRD V1 ***- D4P3Y2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003677 NbC25816994g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|469; (*GB) gi|296086090|emb|CBI31531.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FF86|DCR_ARATH (e_value=8e-66) BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1;; (*TAIR) AT2G39980.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr2:16688437-16689885 REVERSE LENGTH=482;; (*ITAG) Solyc05g052670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62027455-62028840 transcript_region:SL2.40ch05:62027455..62028840- go_terms:GO:0016747 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 1 (AHRD V1 **-- Q00M72_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00002880g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0.5|0.75|1|0.75|4|0|214; (*GB) gi|356498095|ref|XP_003517889.1| (e_value=2e-87) PREDICTED: pectinesterase PPME1-like [Glycine max];; (*SWP) sp|Q84WM7|PPME1_ARATH (e_value=2e-73) Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1;; (*TAIR) AT1G69940.1 (e_value=1e-74) | Symbols: ATPPME1, PPME1 | Pectin lyase-like superfamily protein | chr1:26343549-26344971 REVERSE LENGTH=361;; (*ITAG) Solyc05g052120.2.1 (e_value=5e-121) genomic_reference:SL2.40ch05 gene_region:61579849-61583887 transcript_region:SL2.40ch05:61579849..61583887+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8VPP5_OLEEU); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00002880g0012.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.6|0.25|0|5|0|198; (*GB) gi|225454952|ref|XP_002280421.1| (e_value=8e-55) PREDICTED: metacaspase-1 [Vitis vinifera];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=5e-54) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=3e-55) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc05g052130.2.1 (e_value=4e-64) genomic_reference:SL2.40ch05 gene_region:61588398-61590820 transcript_region:SL2.40ch05:61588398..61590820+ go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00002880g0008.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|201; (*GB) gi|2493046|sp|Q40089.1|ATP4_IPOBA (e_value=1e-128) RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor;; (*SWP) sp|Q40089|ATP4_IPOBA (e_value=3e-130) ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G47030.1 (e_value=2e-106) | Symbols: | ATPase, F1 complex, delta/epsilon subunit | chr5:19090384-19092034 FORWARD LENGTH=203;; (*ITAG) Solyc03g095190.2.1 (e_value=7e-127) genomic_reference:SL2.40ch03 gene_region:49598390-49602085 transcript_region:SL2.40ch03:49598390..49602085- go_terms:GO:0008270,GO:0016887 functional_description:"ATP synthase epsilon chain (AHRD V1 ***- A3UHR9_9RHOB); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0008270,GO:0016887 NbS00016222g0015.1 protein AED:0.32 eAED:0.32 QI:210|0.88|0.89|1|0.88|0.89|19|512|582; (*GB) gi|296085890|emb|CBI31214.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46070|TF3B_KLULA (e_value=8e-40) Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2;; (*TAIR) AT3G09360.1 (e_value=5e-117) | Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604;; (*ITAG) Solyc01g088720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00016222g0013.1 protein AED:0.24 eAED:0.24 QI:832|0.75|0.8|1|0.25|0.2|5|317|341; (*GB) gi|225429187|ref|XP_002275857.1| (e_value=9e-121) PREDICTED: dnaJ homolog subfamily C member 17-like [Vitis vinifera];; (*SWP) sp|Q91WT4|DJC17_MOUSE (e_value=6e-21) DnaJ homolog subfamily C member 17 OS=Mus musculus GN=Dnajc17 PE=2 SV=1;; (*TAIR) AT5G23590.2 (e_value=1e-106) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:7953870-7954936 REVERSE LENGTH=296;; (*ITAG) Solyc01g088730.2.1 (e_value=2e-178) genomic_reference:SL2.40ch01 gene_region:75260000-75262665 transcript_region:SL2.40ch01:75260000..75262665- go_terms:GO:0042803,GO:0002020 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- A6CVH2_9VIBR); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0042803,GO:0002020 NbS00016222g0017.1 protein AED:0.27 eAED:0.36 QI:0|0.33|0.5|1|0|0|4|0|423; (*GB) gi|255571071|ref|XP_002526486.1| (e_value=1e-141) 1-phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis];; (*SWP) sp|Q56YP2|PI5K1_ARATH (e_value=9e-16) Phosphatidylinositol 4-phosphate 5-kinase 1 OS=Arabidopsis thaliana GN=PIP5K1 PE=1 SV=1;; (*TAIR) AT4G17080.1 (e_value=3e-116) | Symbols: | Histone H3 K4-specific methyltransferase SET7/9 family protein | chr4:9601570-9603815 FORWARD LENGTH=513;; (*ITAG) Solyc10g061960.1.1 (e_value=5e-144) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54554571-54559270 transcript_region:SL2.40ch10:54554571..54559270+ go_terms:GO:0042302 functional_description:"MORN repeat-containing protein (AHRD V1 *--- A4WSX3_RHOS5); contains Interpro domain(s) IPR003409 MORN motif "; GO:0042302 NbS00011017g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|147840499|emb|CAN61785.1| (e_value=2e-20) hypothetical protein VITISV_015873 [Vitis vinifera];; (*ITAG) Solyc01g005420.2.1 (e_value=9e-53) genomic_reference:SL2.40ch01 gene_region:293530-294356 transcript_region:SL2.40ch01:293530..294356- functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J5_CAPAN); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00011017g0012.1 protein AED:0.08 eAED:0.21 QI:0|0|0|1|0|0|2|0|115; (*ITAG) Solyc01g005420.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:293530-294356 transcript_region:SL2.40ch01:293530..294356- functional_description:"SRC2-like protein (AHRD V1 ***- A4K8J5_CAPAN); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00011017g0209.1 protein AED:0.10 eAED:0.14 QI:17|0|0|1|0|0|2|0|249 NbS00033847g0004.1 protein AED:0.13 eAED:0.13 QI:318|0.9|0.81|1|0.9|0.81|11|0|471; (*GB) gi|225455177|ref|XP_002270121.1| (e_value=0.0) PREDICTED: uncharacterized calcium-binding protein At1g02270 [Vitis vinifera];; (*SWP) sp|O81916|YC22_ARATH (e_value=0.0) Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2;; (*TAIR) AT5G54130.2 (e_value=0.0) | Symbols: | Calcium-binding endonuclease/exonuclease/phosphatase family | chr5:21962900-21965279 FORWARD LENGTH=436;; (*ITAG) Solyc03g080080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45528423-45532481 transcript_region:SL2.40ch03:45528423..45532481+ go_terms:GO:0005509 functional_description:"Carbon catabolite repressor protein 4 homolog 3 (AHRD V1 *--- CCR4C_ARATH); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; GO:0005509 NbS00005964g0007.1 protein AED:0.13 eAED:0.13 QI:79|1|1|1|0|0.2|5|475|69; (*GB) gi|1351359|sp|P48504.2|QCR6_SOLTU (e_value=5e-41) RecName: Full=Cytochrome b-c1 complex subunit 6; AltName: Full=CR7; AltName: Full=Complex III subunit 6; AltName: Full=Complex III subunit VI; AltName: Full=Mitochondrial hinge protein; AltName: Full=Ubiquinol-cytochrome c reductase complex 7.8 kDa protein;; (*SWP) sp|P48504|QCR6_SOLTU (e_value=2e-42) Cytochrome b-c1 complex subunit 6 OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT1G15120.1 (e_value=8e-38) | Symbols: | Ubiquinol-cytochrome C reductase hinge protein | chr1:5203091-5203897 FORWARD LENGTH=69;; (*ITAG) Solyc09g074870.2.1 (e_value=9e-44) genomic_reference:SL2.40ch09 gene_region:62177324-62184749 transcript_region:SL2.40ch09:62177324..62184749- go_terms:GO:0006122,GO:0005975,GO:0019318 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 *-*- O48971_TOBAC); contains Interpro domain(s) IPR003422 Ubiquinol-cytochrome C reductase hinge "; GO:0006122,GO:0005975,GO:0019318 NbS00005964g0102.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|116 NbS00005964g0101.1 protein AED:0.21 eAED:0.21 QI:0|0.75|0.66|0.88|1|1|9|289|378 NbS00020972g0003.1 protein AED:0.18 eAED:0.18 QI:491|0.8|0.66|1|0.8|0.66|6|2161|282; (*GB) gi|356576239|ref|XP_003556241.1| (e_value=6e-71) PREDICTED: uncharacterized protein LOC100820379 [Glycine max];; (*TAIR) AT5G04250.2 (e_value=3e-59) | Symbols: | Cysteine proteinases superfamily protein | chr5:1176397-1178492 FORWARD LENGTH=345;; (*ITAG) Solyc04g024710.2.1 (e_value=1e-125) genomic_reference:SL2.40ch04 gene_region:14102169-14113772 transcript_region:SL2.40ch04:14102169..14113772+ go_terms:GO:0008234 functional_description:"Cysteine-type peptidase (AHRD V1 **** B6T6Y3_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00020972g0001.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|4|0|433; (*GB) gi|356572460|ref|XP_003554386.1| (e_value=2e-173) PREDICTED: probable receptor-like protein kinase At5g47070-like [Glycine max];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=3e-100) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT2G39110.1 (e_value=6e-165) | Symbols: | Protein kinase superfamily protein | chr2:16319770-16321568 FORWARD LENGTH=435;; (*ITAG) Solyc09g075720.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62836132-62838273 transcript_region:SL2.40ch09:62836132..62838273- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020972g0007.1 protein AED:0.59 eAED:0.59 QI:0|0.5|0.66|0.66|1|1|3|265|97 NbS00020972g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|386; (*GB) gi|225468646|ref|XP_002267979.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Vitis vinifera];; (*SWP) sp|O22714|PPR86_ARATH (e_value=3e-175) Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1;; (*TAIR) AT1G60770.1 (e_value=2e-176) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:22366959-22368648 REVERSE LENGTH=491;; (*ITAG) Solyc11g006380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1086710-1089228 transcript_region:SL2.40ch11:1086710..1089228+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbC24281017g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|356522578|ref|XP_003529923.1| (e_value=2e-76) PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Glycine max];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=9e-69) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=6e-77) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc07g027020.2.1 (e_value=2e-84) genomic_reference:SL2.40ch07 gene_region:33214854-33219582 transcript_region:SL2.40ch07:33214854..33219582- go_terms:GO:0005840,GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005840,GO:0006468 NbS00061300g0001.1 protein AED:0.34 eAED:0.54 QI:0|0|0|1|0|0|2|0|64; (*GB) gi|268638403|gb|ACZ17543.1| (e_value=1e-14) oxidoreductase [Capsicum annuum];; (*ITAG) Solyc10g076680.1.1 (e_value=8e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58954268-58954534 transcript_region:SL2.40ch10:58954268..58954534+ go_terms:GO:0016491 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-- Q069K4_9SOLA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00014116g0008.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|98; (*ITAG) Solyc06g083120.1.1 (e_value=4e-22) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:44958544-44958801 transcript_region:SL2.40ch06:44958544..44958801- functional_description:"Unknown Protein (AHRD V1)"; NbS00014116g0013.1 protein AED:0.18 eAED:0.18 QI:329|0.83|0.89|0.94|0.55|0.68|19|353|665; (*GB) gi|255572632|ref|XP_002527249.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G48520.1 (e_value=0.0) | Symbols: | unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | chr5:19661407-19666147 FORWARD LENGTH=617;; (*ITAG) Solyc06g083090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44925081-44937173 transcript_region:SL2.40ch06:44925081..44937173- functional_description:"HAUS augmin-like complex subunit 3 (AHRD V1 *--- HAUS3_HUMAN)"; NbS00014116g0015.1 protein AED:0.23 eAED:0.23 QI:132|0.76|0.71|1|0.76|0.71|14|195|662; (*GB) gi|255572648|ref|XP_002527257.1| (e_value=0.0) fimbrin, putative [Ricinus communis];; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=0.0) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G48460.1 (e_value=0.0) | Symbols: | Actin binding Calponin homology (CH) domain-containing protein | chr5:19636225-19639365 REVERSE LENGTH=654;; (*ITAG) Solyc06g083070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44904703-44911714 transcript_region:SL2.40ch06:44904703..44911714- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00014116g0014.1 protein AED:0.34 eAED:0.42 QI:0|0.75|0.6|1|0.75|0.6|5|227|137; (*GB) gi|255564772|ref|XP_002523380.1| (e_value=4e-82) Protein FAM96B, putative [Ricinus communis];; (*SWP) sp|Q9C9G6|U195A_ARATH (e_value=7e-72) MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2;; (*TAIR) AT1G68310.1 (e_value=7e-74) | Symbols: AE7 | Protein of unknown function (DUF59) | chr1:25599812-25601239 FORWARD LENGTH=159;; (*ITAG) Solyc06g083060.2.1 (e_value=3e-77) genomic_reference:SL2.40ch06 gene_region:44900180-44904605 transcript_region:SL2.40ch06:44900180..44904605- go_terms:GO:0005515,GO:0010209 functional_description:"FAM96B (AHRD V1 **-- B0WXK4_CULQU); contains Interpro domain(s) IPR002744 Protein of unknown function DUF59 "; GO:0005515,GO:0010209 NbS00017709g0003.1 protein AED:0.09 eAED:0.09 QI:130|0.66|0.25|1|1|1|4|0|384; (*GB) gi|575942|dbj|BAA07681.1| (e_value=0.0) stearoyl-acyl carrier protein desaturase [Sesamum indicum];; (*SWP) sp|P22337|STAD_RICCO (e_value=0.0) Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT2G43710.1 (e_value=0.0) | Symbols: SSI2, FAB2 | Plant stearoyl-acyl-carrier-protein desaturase family protein | chr2:18120107-18122495 FORWARD LENGTH=401;; (*ITAG) Solyc06g053480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32770333-32774663 transcript_region:SL2.40ch06:32770333..32774663+ go_terms:GO:0004768,GO:0045300 functional_description:"Stearoyl-acyl carrier protein desaturase (AHRD V1 **** B7TZ44_SPIOL); contains Interpro domain(s) IPR005067 Fatty acid desaturase, type 2 "; GO:0004768,GO:0045300 NbS00013816g0001.1 protein AED:0.13 eAED:0.13 QI:30|0.90|0.83|1|1|1|12|0|757; (*GB) gi|113205145|gb|AAT40494.2| (e_value=0.0) Putative microtubule-associated protein, identical [Solanum demissum];; (*SWP) sp|Q9FHM4|MA653_ARATH (e_value=0.0) 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1;; (*TAIR) AT5G51600.1 (e_value=0.0) | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707;; (*ITAG) Solyc03g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1721232-1725024 transcript_region:SL2.40ch03:1721232..1725024+ go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00013816g0012.1 protein AED:0.25 eAED:0.25 QI:691|0.66|0.5|1|1|1|4|0|392; (*GB) gi|225455567|ref|XP_002268776.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244660 [Vitis vinifera];; (*TAIR) AT4G25360.2 (e_value=0.0) | Symbols: | TRICHOME BIREFRINGENCE-LIKE 18 | chr4:12970187-12972404 FORWARD LENGTH=533;; (*ITAG) Solyc03g007120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1713303-1718753 transcript_region:SL2.40ch03:1713303..1718753+ functional_description:"Leaf senescence protein-like (AHRD V1 **-- Q8LQG0_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003138g0006.1 protein AED:0.08 eAED:0.08 QI:50|0.83|0.71|1|0.83|0.85|7|473|206; (*GB) gi|192910878|gb|ACF06547.1| (e_value=7e-147) Mob1 [Elaeis guineensis];; (*SWP) sp|Q8GYX0|MOB1_ARATH (e_value=1e-142) MOB kinase activator-like 1 OS=Arabidopsis thaliana GN=At4g19045 PE=2 SV=1;; (*TAIR) AT5G45550.1 (e_value=4e-149) | Symbols: | Mob1/phocein family protein | chr5:18462284-18464840 FORWARD LENGTH=215;; (*ITAG) Solyc08g075960.2.1 (e_value=5e-152) genomic_reference:SL2.40ch08 gene_region:57203421-57213282 transcript_region:SL2.40ch08:57203421..57213282+ go_terms:GO:0019900 functional_description:"Mps one binder kinase activator-like 1A (AHRD V1 **** B6U9F2_MAIZE); contains Interpro domain(s) IPR005301 Mob1/phocein "; GO:0019900 NbS00012234g0014.1 protein AED:0.14 eAED:0.14 QI:93|0.33|0.5|1|0.66|0.5|4|168|254; (*GB) gi|388501362|gb|AFK38747.1| (e_value=1e-130) unknown [Lotus japonicus];; (*SWP) sp|Q0WPW4|ACCO5_ARATH (e_value=2e-118) 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1;; (*TAIR) AT1G77330.1 (e_value=1e-119) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:29063215-29064447 REVERSE LENGTH=307;; (*ITAG) Solyc06g060070.2.1 (e_value=2e-137) genomic_reference:SL2.40ch06 gene_region:34368757-34371533 transcript_region:SL2.40ch06:34368757..34371533- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 ***- Q9FR98_MUSAC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00012234g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|632; (*GB) gi|225452893|ref|XP_002278719.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LXE8|PP386_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1;; (*TAIR) AT5G15340.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4982273-4984144 REVERSE LENGTH=623;; (*ITAG) Solyc06g060050.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34354169-34356067 transcript_region:SL2.40ch06:34354169..34356067+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7B9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00012234g0015.1 protein AED:0.24 eAED:0.26 QI:0|0.75|0.55|1|0.25|0.44|9|0|923; (*GB) gi|302798551|ref|XP_002981035.1| (e_value=0.0) hypothetical protein SELMODRAFT_50862 [Selaginella moellendorffii];; (*SWP) sp|Q9C5W3|NADK2_ARATH (e_value=0.0) NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1;; (*TAIR) AT1G21640.1 (e_value=0.0) | Symbols: NADK2, ATNADK2 | NAD kinase 2 | chr1:7588726-7592669 FORWARD LENGTH=985;; (*ITAG) Solyc11g005100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:82018-90812 transcript_region:SL2.40ch11:82018..90812- go_terms:GO:0005516,GO:0003951 functional_description:"NAD kinase 1 (AHRD V1 *-** B6U6Z9_MAIZE); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase "; GO:0005516,GO:0003951 NbS00012234g0010.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|359473511|ref|XP_002272014.2| (e_value=2e-14) PREDICTED: transcription elongation regulator 1-like [Vitis vinifera];; (*ITAG) Solyc04g008700.2.1 (e_value=8e-30) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00014694g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.25|0|1|0.25|0|5|0|283; (*GB) gi|359477840|ref|XP_002283074.2| (e_value=5e-52) PREDICTED: uncharacterized protein LOC100264819 [Vitis vinifera];; (*TAIR) AT1G04650.1 (e_value=7e-31) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:1294893-1298903 REVERSE LENGTH=997;; (*ITAG) Solyc09g091370.2.1 (e_value=4e-126) genomic_reference:SL2.40ch09 gene_region:66013727-66018641 transcript_region:SL2.40ch09:66013727..66018641- functional_description:"At1g04650-like protein (Fragment) (AHRD V1 *-*- C0JC61_9BRAS)"; NbS00014694g0004.1 protein AED:0.79 eAED:0.81 QI:0|0|0|0.5|0.33|0.25|4|0|116; (*GB) gi|296081754|emb|CBI20759.3| (e_value=1e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g069010.2.1 (e_value=3e-22) genomic_reference:SL2.40ch08 gene_region:55300249-55313870 transcript_region:SL2.40ch08:55300249..55313870+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2Z4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014694g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|198; (*GB) gi|359477840|ref|XP_002283074.2| (e_value=8e-54) PREDICTED: uncharacterized protein LOC100264819 [Vitis vinifera];; (*TAIR) AT1G04650.1 (e_value=2e-29) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:1294893-1298903 REVERSE LENGTH=997;; (*ITAG) Solyc09g091370.2.1 (e_value=4e-101) genomic_reference:SL2.40ch09 gene_region:66013727-66018641 transcript_region:SL2.40ch09:66013727..66018641- functional_description:"At1g04650-like protein (Fragment) (AHRD V1 *-*- C0JC61_9BRAS)"; NbS00004960g0005.1 protein AED:0.22 eAED:0.23 QI:20|0.8|0.5|1|1|0.83|6|0|566; (*GB) gi|225452863|ref|XP_002283766.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=4e-46) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc02g067210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31975416-31981655 transcript_region:SL2.40ch02:31975416..31981655- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00025130g0009.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|1|1|2|359|350; (*GB) gi|359474468|ref|XP_002277716.2| (e_value=1e-141) PREDICTED: zinc finger CCCH domain-containing protein 12-like [Vitis vinifera];; (*SWP) sp|Q9LQM3|C3H12_ARATH (e_value=9e-119) Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1;; (*TAIR) AT1G32360.1 (e_value=7e-120) | Symbols: | Zinc finger (CCCH-type) family protein | chr1:11673325-11675162 FORWARD LENGTH=384;; (*ITAG) Solyc06g072720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41239040-41242945 transcript_region:SL2.40ch06:41239040..41242945- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 56 (AHRD V1 ***- C3H56_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00025130g0006.1 protein AED:0.26 eAED:0.26 QI:680|0.88|1|1|0.77|0.8|10|402|486; (*GB) gi|6682871|dbj|BAA88922.1| (e_value=0.0) sigma factor [Nicotiana tabacum];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=2e-39) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G64860.1 (e_value=0.0) | Symbols: SIGA, SIG1, SIG2, SIGB, RPOD1 | sigma factor A | chr1:24098497-24100746 FORWARD LENGTH=502;; (*ITAG) Solyc06g072710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41233970-41238889 transcript_region:SL2.40ch06:41233970..41238889+ go_terms:GO:0005515 functional_description:"RNA polymerase sigma factor (AHRD V1 ***- Q8S9D0_GUITH); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0005515 NbS00000496g0001.1 protein AED:0.16 eAED:0.27 QI:0|0|0|1|0|0|4|0|248; (*ITAG) Solyc01g065740.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:64741247-64745383 transcript_region:SL2.40ch01:64741247..64745383+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048148g0005.1 protein AED:0.22 eAED:0.22 QI:327|0.71|0.87|1|0.42|0.25|8|301|393; (*GB) gi|505146|dbj|BAA06538.1| (e_value=0.0) protein-serine/threonine kinase [Nicotiana tabacum];; (*SWP) sp|Q9LFV3|Y5157_ARATH (e_value=1e-146) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1;; (*TAIR) AT5G15730.1 (e_value=5e-148) | Symbols: CRLK2, AtCRLK2 | Protein kinase superfamily protein | chr5:5131284-5133046 FORWARD LENGTH=434;; (*ITAG) Solyc02g089290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45733900-45737882 transcript_region:SL2.40ch02:45733900..45737882- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / kinase/ protein serine / threonine kinase (AHRD V1 **** C5DB47_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00039217g0005.1 protein AED:0.09 eAED:0.09 QI:78|0.92|0.78|1|0.84|0.85|14|0|839; (*GB) gi|359478697|ref|XP_002282314.2| (e_value=0.0) PREDICTED: zinc finger CCCH domain-containing protein 24-like [Vitis vinifera];; (*SWP) sp|Q8L7S3|C3H24_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis thaliana GN=At2g28450 PE=2 SV=1;; (*TAIR) AT2G28450.1 (e_value=0.0) | Symbols: | zinc finger (CCCH-type) family protein | chr2:12162180-12165761 REVERSE LENGTH=809;; (*ITAG) Solyc11g069340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51024238-51035406 transcript_region:SL2.40ch11:51024238..51035406+ go_terms:GO:0006396,GO:0003676,GO:0008168,GO:0008270 functional_description:"23S rRNA (Uracil-5-)-methyltransferase (AHRD V1 *-*- D5S459_CLODI); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0006396,GO:0003676,GO:0008168,GO:0008270 NbS00006440g0001.1 protein AED:0.04 eAED:0.04 QI:325|1|0.5|1|0|0|2|0|1069; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=0.0) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101020.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82648492-82651919 transcript_region:SL2.40ch01:82648492..82651919+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00006440g0005.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|0|0.25|4|0|1107; (*GB) gi|359487575|ref|XP_002276824.2| (e_value=0.0) PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera];; (*SWP) sp|Q8H6B1|SPT16_MAIZE (e_value=0.0) FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1;; (*TAIR) AT4G10710.1 (e_value=0.0) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82651948-82655945 transcript_region:SL2.40ch01:82651948..82655945- go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00001658g0013.1 protein AED:0.27 eAED:0.27 QI:95|1|0.85|1|0.83|0.71|7|246|316; (*GB) gi|297743901|emb|CBI36871.3| (e_value=4e-121) unnamed protein product [Vitis vinifera];; (*SWP) sp|A0QSH4|Y1480_MYCS2 (e_value=2e-17) Putative S-adenosyl-L-methionine-dependent methyltransferase MSMEG_1480 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_1480 PE=3 SV=1;; (*TAIR) AT4G02405.1 (e_value=3e-97) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:1057999-1059671 REVERSE LENGTH=333;; (*ITAG) Solyc06g084570.2.1 (e_value=9e-171) genomic_reference:SL2.40ch06 gene_region:45932130-45940454 transcript_region:SL2.40ch06:45932130..45940454+ functional_description:"Methyltransferase (AHRD V1 *-*- D5P6G9_9MYCO)"; NbS00001658g0014.1 protein AED:0.46 eAED:0.64 QI:0|0.33|0|1|1|1|4|0|100; (*GB) gi|255564184|ref|XP_002523089.1| (e_value=2e-21) protein translocase, putative [Ricinus communis];; (*SWP) sp|Q9LZH8|OP164_ARATH (e_value=8e-22) Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1;; (*TAIR) AT3G62880.2 (e_value=6e-23) | Symbols: ATOEP16-4 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr3:23245103-23246002 REVERSE LENGTH=136;; (*ITAG) Solyc06g084550.2.1 (e_value=6e-48) genomic_reference:SL2.40ch06 gene_region:45923087-45926101 transcript_region:SL2.40ch06:45923087..45926101- go_terms:GO:0015450 functional_description:"Atoep16-4 (AHRD V1 ***- D7LTA7_ARALY); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00021041g0006.1 protein AED:0.14 eAED:0.29 QI:388|0|0|1|0|0.5|2|143|65 NbS00017882g0006.1 protein AED:0.11 eAED:0.11 QI:247|0.88|0.9|1|0.77|0.8|10|452|561; (*GB) gi|225424297|ref|XP_002284658.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264607 isoform 1 [Vitis vinifera];; (*TAIR) AT1G70770.2 (e_value=4e-166) | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:26688622-26691185 REVERSE LENGTH=610;; (*ITAG) Solyc05g026540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:41738472-41744946 transcript_region:SL2.40ch05:41738472..41744946+ functional_description:"Transmembrane protein 214 (AHRD V1 *-*- TM214_BOVIN)"; NbS00017882g0008.1 protein AED:0.34 eAED:0.50 QI:74|0|0|1|0|0|3|0|128; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-14) hypothetical protein [Nicotiana tabacum]; NbS00025883g0001.1 protein AED:0.26 eAED:0.31 QI:132|0.6|0.33|1|0.8|0.83|6|0|180; (*GB) gi|90823167|gb|ABE01085.1| (e_value=6e-80) BTF3 [Nicotiana benthamiana];; (*SWP) sp|Q64152|BTF3_MOUSE (e_value=3e-35) Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3;; (*TAIR) AT1G17880.1 (e_value=7e-70) | Symbols: BTF3, ATBTF3 | basic transcription factor 3 | chr1:6152572-6153425 REVERSE LENGTH=165;; (*ITAG) Solyc09g010330.2.1 (e_value=2e-80) genomic_reference:SL2.40ch09 gene_region:3715630-3718303 transcript_region:SL2.40ch09:3715630..3718303- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex subunit beta (AHRD V1 *--- C5FKK9_NANOT); contains Interpro domain(s) IPR002715 Nascent polypeptide-associated complex NAC "; GO:0051082 NbS00021029g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|224085089|ref|XP_002307486.1| (e_value=8e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHX3|LRKS6_ARATH (e_value=2e-86) L-type lectin-domain containing receptor kinase S.6 OS=Arabidopsis thaliana GN=LECRKS6 PE=2 SV=1;; (*TAIR) AT5G42120.1 (e_value=2e-87) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:16833073-16835148 REVERSE LENGTH=691;; (*ITAG) Solyc04g071000.1.1 (e_value=4e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55456739-55458772 transcript_region:SL2.40ch04:55456739..55458772- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM22_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00021029g0010.1 protein AED:0.30 eAED:0.31 QI:61|0.66|0.42|1|0.66|0.71|7|831|447; (*GB) gi|350534954|ref|NP_001233912.1| (e_value=0.0) E4/E8 binding protein-1 [Solanum lycopersicum];; (*ITAG) Solyc04g070990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55434528-55443611 transcript_region:SL2.40ch04:55434528..55443611- go_terms:GO:0003677 functional_description:"PHD-finger family protein expressed (AHRD V1 *--- Q53MN0_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00021029g0013.1 protein AED:0.23 eAED:0.26 QI:4|0.93|0.82|1|0.81|0.88|17|0|799; (*GB) gi|295919782|gb|ADG60271.1| (e_value=0.0) cycloartenol synthase [Withania somnifera];; (*SWP) sp|O82139|CAS1_PANGI (e_value=0.0) Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1;; (*TAIR) AT2G07050.1 (e_value=0.0) | Symbols: CAS1 | cycloartenol synthase 1 | chr2:2924629-2930295 FORWARD LENGTH=759;; (*ITAG) Solyc04g070980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55417859-55433814 transcript_region:SL2.40ch04:55417859..55433814+ go_terms:GO:0000250 functional_description:"Lanosterol synthase (AHRD V1 **** Q1ERD3_LOTJA); contains Interpro domain(s) IPR018333 Squalene cyclase "; GO:0000250 NbS00059070g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|288; (*GB) gi|22128591|gb|AAM52341.1| (e_value=2e-138) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-61) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=6e-62) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=1e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00059070g0005.1 protein AED:0.33 eAED:0.37 QI:0|0|0|0.6|0|0.2|5|0|252; (*GB) gi|22128591|gb|AAM52341.1| (e_value=1e-100) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=7e-47) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=5e-48) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00000902g0009.1 protein AED:0.07 eAED:0.08 QI:90|1|0.66|1|0.5|0.66|3|0|683; (*GB) gi|302142412|emb|CBI19615.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RY67|WAKLO_ARATH (e_value=0.0) Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2;; (*TAIR) AT2G23450.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:9988926-9991244 REVERSE LENGTH=708;; (*ITAG) Solyc04g079710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61678551-61682784 transcript_region:SL2.40ch04:61678551..61682784+ go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM25_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00006248g0003.1 protein AED:0.05 eAED:0.05 QI:160|1|0.75|1|1|1|4|0|512; (*GB) gi|359479820|ref|XP_002269036.2| (e_value=2e-165) PREDICTED: zinc finger protein MAGPIE [Vitis vinifera];; (*SWP) sp|Q9FFH3|NUC_ARATH (e_value=2e-97) Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1;; (*TAIR) AT5G66730.1 (e_value=2e-98) | Symbols: | C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500;; (*ITAG) Solyc09g074780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62085904-62089680 transcript_region:SL2.40ch09:62085904..62089680+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 **-- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00006248g0113.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0.5|0.5|1|1|4|0|157 NbS00006248g0115.1 protein AED:0.20 eAED:0.20 QI:0|0.86|0.68|1|0.8|0.68|16|695|1126 NbS00006248g0118.1 protein AED:0.40 eAED:0.55 QI:66|1|0.33|1|0.5|0.33|3|0|73 NbS00024058g0001.1 protein AED:0.28 eAED:0.28 QI:188|0.62|0.77|1|0.37|0.44|9|647|335; (*GB) gi|1777921|gb|AAB40608.1| (e_value=0.0) glutamate decarboxylase [Nicotiana tabacum];; (*SWP) sp|Q07346|DCE_PETHY (e_value=0.0) Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1;; (*TAIR) AT5G17330.1 (e_value=0.0) | Symbols: GAD, GAD1 | glutamate decarboxylase | chr5:5711141-5714839 FORWARD LENGTH=502;; (*ITAG) Solyc11g011920.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4848830-4855228 transcript_region:SL2.40ch11:4848830..4855228- go_terms:GO:0006536,GO:0030170,GO:0019752 functional_description:"Glutamate decarboxylase (AHRD V1 ***- Q8LKR4_TOBAC); contains Interpro domain(s) IPR010107 Glutamate decarboxylase "; GO:0006536,GO:0030170,GO:0019752 NbS00044339g0007.1 protein AED:0.33 eAED:0.39 QI:0|0.33|0|0.75|0|0.25|4|0|152; (*GB) gi|85068674|gb|ABC69417.1| (e_value=2e-42) CYP72A54 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=1e-35) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14640.1 (e_value=2e-40) | Symbols: CYP72A10 | cytochrome P450, family 72, subfamily A, polypeptide 10 | chr3:4919856-4921787 FORWARD LENGTH=514;; (*ITAG) Solyc07g062500.2.1 (e_value=5e-44) genomic_reference:SL2.40ch07 gene_region:62434832-62439287 transcript_region:SL2.40ch07:62434832..62439287+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044339g0006.1 protein AED:0.40 eAED:0.54 QI:48|0|0|1|0|0.33|3|0|91; (*GB) gi|356556886|ref|XP_003546751.1| (e_value=2e-13) PREDICTED: secologanin synthase-like [Glycine max];; (*TAIR) AT3G14620.1 (e_value=3e-14) | Symbols: CYP72A8 | cytochrome P450, family 72, subfamily A, polypeptide 8 | chr3:4914978-4916853 FORWARD LENGTH=515;; (*ITAG) Solyc07g055470.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:60808989-60811808 transcript_region:SL2.40ch07:60808989..60811808- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006088g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.25|1|0.66|0.5|4|0|366; (*GB) gi|225430690|ref|XP_002265889.1| (e_value=2e-165) PREDICTED: salicylate O-methyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9SPV4|SAMT_CLABR (e_value=2e-84) Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1;; (*TAIR) AT4G36470.1 (e_value=1e-147) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:17215128-17216475 REVERSE LENGTH=371;; (*ITAG) Solyc02g084950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42565245-42567726 transcript_region:SL2.40ch02:42565245..42567726+ go_terms:GO:0008757 functional_description:"Carboxyl methyltransferase 4 (AHRD V1 **** B0ZB58_HUMLU); contains Interpro domain(s) IPR005299 SAM dependent carboxyl methyltransferase "; GO:0008757 NbS00006088g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|242; (*GB) gi|359482375|ref|XP_002265060.2| (e_value=4e-85) PREDICTED: chaperone protein DnaJ-like [Vitis vinifera];; (*SWP) sp|Q7UA76|DNAJ_SYNPX (e_value=9e-37) Chaperone protein DnaJ OS=Synechococcus sp. (strain WH8102) GN=dnaJ PE=3 SV=1;; (*TAIR) AT1G80030.2 (e_value=1e-74) | Symbols: | Molecular chaperone Hsp40/DnaJ family protein | chr1:30105398-30108873 REVERSE LENGTH=500;; (*ITAG) Solyc03g116790.2.1 (e_value=1e-112) genomic_reference:SL2.40ch03 gene_region:60114726-60125680 transcript_region:SL2.40ch03:60114726..60125680+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TAJ2_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00030946g0001.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|382; (*GB) gi|225463711|ref|XP_002263752.1| (e_value=1e-105) PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=2e-32) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G06470.1 (e_value=9e-64) | Symbols: | Glutaredoxin family protein | chr5:1974659-1975378 REVERSE LENGTH=239;; (*ITAG) Solyc11g006430.1.1 (e_value=2e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1136221-1137306 transcript_region:SL2.40ch11:1136221..1137306- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *--- D7LZQ8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00030946g0007.1 protein AED:0.32 eAED:0.32 QI:0|1|0.8|1|0.75|0.6|5|0|157; (*GB) gi|147777087|emb|CAN70066.1| (e_value=2e-84) hypothetical protein VITISV_015731 [Vitis vinifera];; (*SWP) sp|Q5ZKF6|5NT3L_CHICK (e_value=1e-33) Cytosolic 5'-nucleotidase III-like protein OS=Gallus gallus GN=NT5C3L PE=2 SV=1;; (*TAIR) AT2G38680.1 (e_value=4e-76) | Symbols: | 5'-nucleotidases;magnesium ion binding | chr2:16174011-16175873 REVERSE LENGTH=315;; (*ITAG) Solyc11g006420.1.1 (e_value=5e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1128079-1134287 transcript_region:SL2.40ch11:1128079..1134287- go_terms:GO:0005737 functional_description:"5&apos-nucleotidase cytosolic III (AHRD V1 ***- B2GUX5_RAT); contains Interpro domain(s) IPR006434 HAD-superfamily hydrolase, subfamily IE "; GO:0005737 NbS00041252g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|0.5|0.6|5|369|174; (*GB) gi|255548958|ref|XP_002515535.1| (e_value=8e-64) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-58) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT2G34160.1 (e_value=1e-59) | Symbols: | Alba DNA/RNA-binding protein | chr2:14426283-14427220 FORWARD LENGTH=130;; (*ITAG) Solyc06g066100.2.1 (e_value=1e-82) genomic_reference:SL2.40ch06 gene_region:37826995-37830559 transcript_region:SL2.40ch06:37826995..37830559- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 ***- D7LGX9_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00041252g0004.1 protein AED:0.23 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|243; (*GB) gi|224092460|ref|XP_002309619.1| (e_value=9e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT1G64870.1 (e_value=2e-63) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G45200.1); Has 99 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24102917-24103831 FORWARD LENGTH=304;; (*ITAG) Solyc12g020130.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14136924-14137790 transcript_region:SL2.40ch12:14136924..14137790+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034421g0001.1 protein AED:0.12 eAED:0.20 QI:0|0|0|1|1|1|3|0|591; (*GB) gi|225448505|ref|XP_002272996.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 13 [Vitis vinifera];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=2e-83) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=1e-84) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc06g051090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:30698443-30700131 transcript_region:SL2.40ch06:30698443..30700131- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00041476g0012.1 protein AED:0.26 eAED:0.26 QI:45|1|1|1|0.77|0.7|10|28|279; (*GB) gi|356531146|ref|XP_003534139.1| (e_value=7e-140) PREDICTED: Down syndrome critical region protein 3 homolog [Glycine max];; (*SWP) sp|O14972|DSCR3_HUMAN (e_value=5e-62) Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=1 SV=1;; (*TAIR) AT1G48550.1 (e_value=1e-137) | Symbols: | Vacuolar protein sorting-associated protein 26 | chr1:17950792-17952645 REVERSE LENGTH=327;; (*ITAG) Solyc03g118660.2.1 (e_value=1e-174) genomic_reference:SL2.40ch03 gene_region:61578571-61582874 transcript_region:SL2.40ch03:61578571..61582874- go_terms:GO:0030904 functional_description:"Down syndrome critical region protein (AHRD V1 ***- Q17H45_AEDAE); contains Interpro domain(s) IPR005377 Vacuolar protein sorting-associated protein 26 "; GO:0030904 NbS00041476g0008.1 protein AED:0.23 eAED:0.24 QI:0|0.92|0.90|1|0.90|0.95|42|728|1442; (*GB) gi|359491523|ref|XP_002278967.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262718 [Vitis vinifera];; (*SWP) sp|Q46888|YGBJ_ECOLI (e_value=4e-55) Uncharacterized oxidoreductase ygbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1;; (*TAIR) AT1G18270.1 (e_value=0.0) | Symbols: | ketose-bisphosphate aldolase class-II family protein | chr1:6283634-6293772 REVERSE LENGTH=1373;; (*ITAG) Solyc03g118640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61555027-61574682 transcript_region:SL2.40ch03:61555027..61574682+ go_terms:GO:0050662,GO:0008152,GO:0006096,GO:0016491,GO:0055114 functional_description:"D-tagatose-1,6-bisphosphate aldolase subunit gatY (AHRD V1 *-*- GATY_ECOLX); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0006096,GO:0016491,GO:0055114 NbS00041476g0013.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.5|1|0.2|0.33|6|0|353; (*GB) gi|224118626|ref|XP_002317867.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66HG4|GALM_RAT (e_value=1e-85) Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1;; (*TAIR) AT3G17940.1 (e_value=2e-176) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:6143707-6145244 REVERSE LENGTH=341;; (*ITAG) Solyc03g118650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61575132-61577276 transcript_region:SL2.40ch03:61575132..61577276+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose 1-epimerase-like protein (AHRD V1 **** Q9LVH6_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbC25462513g0003.1 protein AED:0.26 eAED:0.31 QI:14|0.33|0|0.75|1|1|4|0|234; (*GB) gi|297738389|emb|CBI27590.3| (e_value=6e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C7G1|PUB45_ARATH (e_value=2e-91) U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1;; (*TAIR) AT1G27910.1 (e_value=2e-92) | Symbols: PUB45, ATPUB45 | plant U-box 45 | chr1:9720962-9723975 REVERSE LENGTH=768;; (*ITAG) Solyc05g015070.2.1 (e_value=5e-122) genomic_reference:SL2.40ch05 gene_region:9775132-9780790 transcript_region:SL2.40ch05:9775132..9780790- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbC23535595g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|62; (*GB) gi|728744|sp|P40691.1|A115_TOBAC (e_value=3e-34) RecName: Full=Auxin-induced protein PCNT115;; (*SWP) sp|P40691|A115_TOBAC (e_value=8e-36) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60730.1 (e_value=1e-25) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22358327-22360082 REVERSE LENGTH=345;; (*ITAG) Solyc09g097970.2.1 (e_value=2e-31) genomic_reference:SL2.40ch09 gene_region:67192761-67196455 transcript_region:SL2.40ch09:67192761..67196455+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00034886g0005.1 protein AED:0.06 eAED:0.06 QI:180|0.4|0.16|1|0.8|0.66|6|0|508; (*GB) gi|71480741|gb|AAK85402.2| (e_value=0.0) beta-1,3-glucanase [Camellia sinensis];; (*SWP) sp|Q9C7U5|E132_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2;; (*TAIR) AT1G66250.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24693063-24695416 FORWARD LENGTH=505;; (*ITAG) Solyc04g007910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1574818-1580749 transcript_region:SL2.40ch04:1574818..1580749- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00021551g0003.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|83 NbS00021551g0010.1 protein AED:0.15 eAED:0.15 QI:326|1|1|1|1|1|2|366|149; (*GB) gi|388496812|gb|AFK36472.1| (e_value=1e-54) unknown [Lotus japonicus];; (*TAIR) AT1G11120.2 (e_value=3e-35) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3715229-3717320 FORWARD LENGTH=161;; (*ITAG) Solyc02g078720.2.1 (e_value=4e-81) genomic_reference:SL2.40ch02 gene_region:37964451-37969357 transcript_region:SL2.40ch02:37964451..37969357+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021551g0011.1 protein AED:0.40 eAED:0.46 QI:0|0|0|1|0.5|0.33|3|0|90; (*ITAG) Solyc05g023850.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29603236-29604099 transcript_region:SL2.40ch05:29603236..29604099- functional_description:"Gag-pol polyprotein (AHRD V1 ***- Q710T7_POPDE)"; NbS00021551g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|357446425|ref|XP_003593490.1| (e_value=8e-36) hypothetical protein MTR_2g012750 [Medicago truncatula];; (*TAIR) AT1G11125.1 (e_value=1e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). | chr1:3718846-3719643 FORWARD LENGTH=265;; (*ITAG) Solyc02g078760.1.1 (e_value=9e-118) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:37980682-37981443 transcript_region:SL2.40ch02:37980682..37981443- functional_description:"CK25 (AHRD V1 ***- Q1W1G0_TOBAC)"; NbS00021551g0012.1 protein AED:0.37 eAED:0.57 QI:0|0|0|1|0|0|2|0|125 NbS00021551g0013.1 protein AED:0.74 eAED:0.80 QI:0|0|0|0.5|0|0|2|0|86 NbS00021551g0014.1 protein AED:0.56 eAED:0.67 QI:0|0|0|0.5|0|0|2|0|63 NbS00028562g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|226; (*GB) gi|255550075|ref|XP_002516088.1| (e_value=6e-22) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g011440.1.1 (e_value=2e-90) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:7277414-7278070 transcript_region:SL2.40ch06:7277414..7278070- functional_description:"Unknown Protein (AHRD V1)"; NbS00010634g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|261; (*GB) gi|350538977|ref|NP_001233856.1| (e_value=5e-154) yfe37 protein [Solanum lycopersicum];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=1e-75) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=3e-103) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc03g095970.2.1 (e_value=7e-157) genomic_reference:SL2.40ch03 gene_region:51136945-51138116 transcript_region:SL2.40ch03:51136945..51138116+ go_terms:GO:0005507 functional_description:"3-beta hydroxysteroid dehydrogenase (AHRD V1 ***- Q5Q1I5_9LAMI); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0005507 NbS00010634g0008.1 protein AED:0.22 eAED:0.22 QI:319|1|1|1|0.54|0.58|12|552|314; (*GB) gi|11133837|sp|O04860.1|PP2A5_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP2A-5 catalytic subunit;; (*SWP) sp|O04860|PP2A5_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1;; (*TAIR) AT2G42500.1 (e_value=0.0) | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17698099-17701226 REVERSE LENGTH=313;; (*ITAG) Solyc01g073650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70267420-70275286 transcript_region:SL2.40ch01:70267420..70275286- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00011969g0003.1 protein AED:0.20 eAED:0.27 QI:164|0.5|0.42|1|0.66|0.42|7|0|730; (*GB) gi|147787893|emb|CAN71750.1| (e_value=3e-24) hypothetical protein VITISV_040593 [Vitis vinifera];; (*SWP) sp|Q8L3W1|VRN1_ARATH (e_value=3e-17) B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1;; (*TAIR) AT3G18990.1 (e_value=2e-18) | Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341;; (*ITAG) Solyc02g021260.1.1 (e_value=2e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:13096096-13102938 transcript_region:SL2.40ch02:13096096..13102938+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein LOC_Os12g40080 (AHRD V1 *-*- Y1208_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00044087g0002.1 protein AED:0.27 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|67; (*GB) gi|225449274|ref|XP_002281029.1| (e_value=2e-17) PREDICTED: UDP-glycosyltransferase 85A1 isoform 2 [Vitis vinifera];; (*ITAG) Solyc03g078690.2.1 (e_value=2e-22) genomic_reference:SL2.40ch03 gene_region:44923093-44924673 transcript_region:SL2.40ch03:44923093..44924673+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI45_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00045749g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|0|395; (*GB) gi|225432856|ref|XP_002283882.1| (e_value=2e-133) PREDICTED: uncharacterized protein LOC100251040 isoform 1 [Vitis vinifera];; (*TAIR) AT3G22970.1 (e_value=4e-105) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc06g053910.2.1 (e_value=2e-167) genomic_reference:SL2.40ch06 gene_region:33294347-33296503 transcript_region:SL2.40ch06:33294347..33296503- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00004926g0007.1 protein AED:0.10 eAED:0.10 QI:1628|1|1|1|0.66|0.62|16|291|409; (*GB) gi|225463942|ref|XP_002269515.1| (e_value=0.0) PREDICTED: polyphosphoinositide phosphatase [Vitis vinifera];; (*SWP) sp|P42837|FIG4_YEAST (e_value=4e-39) Polyphosphoinositide phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FIG4 PE=1 SV=1;; (*TAIR) AT1G22620.1 (e_value=0.0) | Symbols: ATSAC1 | Phosphoinositide phosphatase family protein | chr1:7997889-8002787 REVERSE LENGTH=912;; (*ITAG) Solyc11g022380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:13687543-13711810 transcript_region:SL2.40ch11:13687543..13711810+ go_terms:GO:0004439 functional_description:"Phosphatidylinositol phosphatase (AHRD V1 *-** D8LRT7_ECTSI); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439 NbS00008544g0003.1 protein AED:0.20 eAED:0.20 QI:0|0.88|0.8|1|0.88|0.7|10|1599|298; (*GB) gi|224080383|ref|XP_002306120.1| (e_value=2e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|P45816|SEC14_YARLI (e_value=7e-37) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT4G39170.1 (e_value=2e-137) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr4:18240887-18243621 FORWARD LENGTH=614;; (*ITAG) Solyc10g053970.1.1 (e_value=3e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49767739-49773903 transcript_region:SL2.40ch10:49767739..49773903- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T026_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00006198g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.66|1|0.6|0.66|6|168|295; (*GB) gi|224065274|ref|XP_002301750.1| (e_value=4e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|F4J469|TI22L_ARATH (e_value=2e-49) Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1;; (*TAIR) AT3G23710.1 (e_value=2e-50) | Symbols: | Tic22-like family protein | chr3:8534061-8536148 FORWARD LENGTH=313;; (*ITAG) Solyc09g092530.2.1 (e_value=1e-98) genomic_reference:SL2.40ch09 gene_region:66931956-66935856 transcript_region:SL2.40ch09:66931956..66935856- functional_description:"Tic22 (AHRD V1 ***- B6U4I8_MAIZE); contains Interpro domain(s) IPR007378 Tic22-like "; NbS00006198g0013.1 protein AED:0.24 eAED:0.26 QI:0|0|0|0.8|0.25|0.2|5|0|330; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-49) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00033272g0011.1 protein AED:0.24 eAED:0.25 QI:0|1|0.85|1|0.83|0.85|7|469|398; (*GB) gi|255575412|ref|XP_002528608.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8BJ56|PLPL2_MOUSE (e_value=8e-18) Patatin-like phospholipase domain-containing protein 2 OS=Mus musculus GN=Pnpla2 PE=1 SV=1;; (*TAIR) AT1G33270.1 (e_value=1e-168) | Symbols: | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | chr1:12068324-12070157 REVERSE LENGTH=369;; (*ITAG) Solyc01g104310.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84486526-84490501 transcript_region:SL2.40ch01:84486526..84490501- go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like phospholipase domain-containing protein (AHRD V1 *-*- B6KR35_TOXGO); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00033272g0010.1 protein AED:0.32 eAED:0.35 QI:0|0.8|0.66|1|0.4|0.66|6|471|211; (*GB) gi|298204587|emb|CBI23862.3| (e_value=2e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=3e-62) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1;; (*TAIR) AT3G26070.1 (e_value=2e-63) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:9526904-9528199 FORWARD LENGTH=242;; (*ITAG) Solyc01g104320.2.1 (e_value=4e-100) genomic_reference:SL2.40ch01 gene_region:84492007-84495850 transcript_region:SL2.40ch01:84492007..84495850- go_terms:GO:0009507 functional_description:"PAP fibrillin (AHRD V1 ***- A2Q498_MEDTR); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00039829g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|245|560; (*GB) gi|225440047|ref|XP_002276858.1| (e_value=0.0) PREDICTED: UDP-glycosyltransferase 86A1 [Vitis vinifera];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=0.0) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc09g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1520626-1524613 transcript_region:SL2.40ch09:1520626..1524613+ go_terms:GO:0080043,GO:0015020,GO:0080044 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 **** C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0015020,GO:0080044 NbS00039829g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.71|0.6|0.93|0.92|0.86|15|251|823; (*GB) gi|297741635|emb|CBI32767.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LJT8|TKI1_ARATH (e_value=0.0) TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2;; (*TAIR) AT2G36960.3 (e_value=0.0) | Symbols: TKI1 | TSL-kinase interacting protein 1 | chr2:15523552-15527245 FORWARD LENGTH=744;; (*ITAG) Solyc09g008100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1569997-1575945 transcript_region:SL2.40ch09:1569997..1575945- go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 ***- D7LJ99_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0005515,GO:0003700 NbS00039829g0011.1 protein AED:0.19 eAED:0.19 QI:151|1|1|1|0.5|0.66|3|260|88; (*GB) gi|225459215|ref|XP_002285745.1| (e_value=6e-40) PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera];; (*TAIR) AT5G40080.1 (e_value=5e-35) | Symbols: | Mitochondrial ribosomal protein L27 | chr5:16040190-16041529 REVERSE LENGTH=94;; (*ITAG) Solyc04g074690.2.1 (e_value=2e-35) genomic_reference:SL2.40ch04 gene_region:58196147-58203239 transcript_region:SL2.40ch04:58196147..58203239- functional_description:"39S ribosomal protein L41 mitochondrial (AHRD V1 ***- B5XGR0_SALSA); contains Interpro domain(s) IPR019189 Ribosomal protein L27/L41, mitochondrial "; NbS00017071g0009.1 protein AED:0.14 eAED:0.15 QI:423|0.66|0.5|1|0.66|0.75|4|0|539; (*GB) gi|225430521|ref|XP_002283376.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Vitis vinifera];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=1e-153) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=1e-154) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00017071g0010.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|0|0|2|0|89; (*GB) gi|224143342|ref|XP_002324922.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LEW0|UBP22_ARATH (e_value=6e-22) Ubiquitin carboxyl-terminal hydrolase 22 OS=Arabidopsis thaliana GN=UBP22 PE=2 SV=1;; (*TAIR) AT5G10790.1 (e_value=5e-23) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557;; (*ITAG) Solyc08g068810.2.1 (e_value=2e-41) genomic_reference:SL2.40ch08 gene_region:55121939-55124839 transcript_region:SL2.40ch08:55121939..55124839+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SXP1_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00039965g0006.1 protein AED:0.22 eAED:0.22 QI:159|1|0.85|1|1|1|7|0|327; (*GB) gi|297733736|emb|CBI14983.3| (e_value=1e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G48210.1 (e_value=5e-77) | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:17849435-17851396 FORWARD LENGTH=315;; (*ITAG) Solyc03g112550.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56990205-56996271 transcript_region:SL2.40ch03:56990205..56996271- functional_description:"Kinetochore protein Spc25 (AHRD V1 *-*- Q54Q96_DICDI); contains Interpro domain(s) IPR013255 Kinetochore-Ndc80 complex, subunit Spc25 "; NbS00039965g0009.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|0.85|0.62|8|0|353; (*GB) gi|225456946|ref|XP_002281557.1| (e_value=0.0) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|A2RVM0|TIC32_ARATH (e_value=6e-82) Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1;; (*TAIR) AT5G50130.1 (e_value=1e-160) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20390066-20393053 FORWARD LENGTH=339;; (*ITAG) Solyc03g112540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56984597-56988917 transcript_region:SL2.40ch03:56984597..56988917+ go_terms:GO:0004745,GO:0046983 functional_description:"Retinol dehydrogenase 12 (AHRD V1 **-* B6UB33_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745,GO:0046983 NbS00020204g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|860; (*GB) gi|224127876|ref|XP_002329199.1| (e_value=1e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHK4|Y5519_ARATH (e_value=7e-19) Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1;; (*TAIR) AT5G05190.1 (e_value=5e-20) | Symbols: | Protein of unknown function (DUF3133) | chr5:1541853-1543875 FORWARD LENGTH=615;; (*ITAG) Solyc03g095610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50236833-50240242 transcript_region:SL2.40ch03:50236833..50240242+ go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00020204g0001.1 protein AED:0.18 eAED:0.18 QI:243|1|0.5|1|0|0|2|0|534; (*GB) gi|224128031|ref|XP_002329237.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05180.1 (e_value=2e-33) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1536924-1538318 FORWARD LENGTH=432;; (*ITAG) Solyc03g095600.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:50224682-50226334 transcript_region:SL2.40ch03:50224682..50226334+ functional_description:"CENP-E like kinetochore protein (AHRD V1 *-*- B6SHI8_MAIZE)"; NbS00020204g0014.1 protein AED:0.23 eAED:0.23 QI:143|1|1|1|0.9|0.90|11|294|542; (*GB) gi|225448729|ref|XP_002275465.1| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9ASX5|Y5520_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic OS=Arabidopsis thaliana GN=At5g05200 PE=1 SV=1;; (*TAIR) AT5G05200.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:1544206-1547082 REVERSE LENGTH=540;; (*ITAG) Solyc03g095620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50240530-50248132 transcript_region:SL2.40ch03:50240530..50248132- functional_description:"ABC-1 domain protein (AHRD V1 **-- A1TWJ2_MARAV); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00020204g0010.1 protein AED:0.36 eAED:0.59 QI:0|0|0|1|1|1|2|0|169 NbC24952794g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-34) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=8e-27) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G50950.1 (e_value=8e-19) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc07g009180.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4234636-4237344 transcript_region:SL2.40ch07:4234636..4237344- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00012351g0004.1 protein AED:0.09 eAED:0.13 QI:0|0.6|0.66|1|0.2|0.5|6|281|303; (*GB) gi|224069908|ref|XP_002303082.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48500.1 (e_value=5e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167;; (*ITAG) Solyc06g083080.2.1 (e_value=8e-55) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039967g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|8|0|331; (*GB) gi|359479028|ref|XP_002284705.2| (e_value=1e-164) PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LCU7|MECR_ARATH (e_value=1e-151) Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1;; (*TAIR) AT3G45770.1 (e_value=1e-152) | Symbols: | Polyketide synthase, enoylreductase family protein | chr3:16805753-16807774 REVERSE LENGTH=375;; (*ITAG) Solyc12g096780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63898570-63901441 transcript_region:SL2.40ch12:63898570..63901441+ go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Mitochondrial trans-2-enoyl-CoA reductase (AHRD V1 **-- A2A846_MOUSE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00000259g0007.1 protein AED:0.08 eAED:0.08 QI:342|1|0.83|1|0.8|0.66|6|0|252; (*GB) gi|359476293|ref|XP_002282161.2| (e_value=7e-158) PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Vitis vinifera];; (*SWP) sp|Q9FX01|HSDD1_ARATH (e_value=2e-152) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 OS=Arabidopsis thaliana GN=3BETAHSD/D1 PE=2 SV=1;; (*TAIR) AT1G47290.2 (e_value=1e-153) | Symbols: AT3BETAHSD/D1, 3BETAHSD/D1 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 | chr1:17336121-17339030 FORWARD LENGTH=439;; (*ITAG) Solyc02g081730.2.1 (e_value=1e-163) genomic_reference:SL2.40ch02 gene_region:40139724-40146798 transcript_region:SL2.40ch02:40139724..40146798+ go_terms:GO:0047012 functional_description:"Sterol-4-alpha-carboxylate 3-dehydrogenase decarboxylating (AHRD V1 **** B6TKP9_MAIZE); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0047012 NbS00000259g0006.1 protein AED:0.27 eAED:0.30 QI:35|0.8|0.5|1|0.4|0.5|6|0|284; (*GB) gi|296081738|emb|CBI20743.3| (e_value=1e-118) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q67ZE1|HSDD2_ARATH (e_value=2e-106) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2;; (*TAIR) AT2G26260.2 (e_value=1e-108) | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178586-11182872 FORWARD LENGTH=473;; (*ITAG) Solyc02g032330.2.1 (e_value=5e-139) genomic_reference:SL2.40ch02 gene_region:18922362-18948137 transcript_region:SL2.40ch02:18922362..18948137+ go_terms:GO:0047012 functional_description:"Sterol-4-alpha-carboxylate 3-dehydrogenase decarboxylating (AHRD V1 **** B6TKP9_MAIZE); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0047012 NbS00056512g0006.1 protein AED:0.11 eAED:0.10 QI:0|0|0|1|0|0|2|0|331; (*GB) gi|359479303|ref|XP_003632253.1| (e_value=6e-99) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Vitis vinifera];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=2e-70) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=2e-71) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc07g055650.1.1 (e_value=3e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60941589-60944476 transcript_region:SL2.40ch07:60941589..60944476+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** B6EB06_NICGU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00001703g0113.1 protein AED:0.06 eAED:0.06 QI:256|0.77|0.6|1|0.55|0.6|10|0|678 NbS00001703g0110.1 protein AED:0.19 eAED:0.19 QI:0|0.85|0.62|1|1|0.87|8|0|727 NbS00001703g0102.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|108 NbS00001703g0218.1 protein AED:0.32 eAED:0.32 QI:619|0.66|0.43|0.93|0.66|0.68|16|0|688 NbS00001703g0214.1 protein AED:0.36 eAED:0.36 QI:0|1|1|1|0.91|1|13|265|363 NbS00001703g0215.1 protein AED:0.19 eAED:0.19 QI:180|1|1|1|0.7|0.63|11|493|200 NbS00001703g0216.1 protein AED:0.28 eAED:0.28 QI:175|1|1|1|0.8|0.66|6|311|99 NbS00014460g0009.1 protein AED:0.00 eAED:0.00 QI:142|1|1|1|0|0|3|245|178; (*GB) gi|255561236|ref|XP_002521629.1| (e_value=3e-43) lipid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZVC7|XYP11_ARATH (e_value=1e-20) Xylogen-like protein 11 OS=Arabidopsis thaliana GN=XYP11 PE=1 SV=2;; (*TAIR) AT3G43720.2 (e_value=3e-28) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:15615549-15617099 REVERSE LENGTH=191;; (*ITAG) Solyc06g073660.2.1 (e_value=2e-82) genomic_reference:SL2.40ch06 gene_region:41837531-41839150 transcript_region:SL2.40ch06:41837531..41839150+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein-like protein (AHRD V1 *-*- C0KHK0_9CARY); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00014460g0010.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|0|0.25|4|0|479; (*GB) gi|255561238|ref|XP_002521630.1| (e_value=1e-150) F-box and wd40 domain protein, putative [Ricinus communis];; (*SWP) sp|Q94AD8|FBW3_ARATH (e_value=6e-134) F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1;; (*TAIR) AT5G21040.2 (e_value=5e-135) | Symbols: FBX2 | F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539;; (*ITAG) Solyc06g073650.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41834764-41836386 transcript_region:SL2.40ch06:41834764..41836386+ functional_description:"WD-repeat protein (AHRD V1 **-- B0BZW8_ACAM1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00022637g0013.1 protein AED:0.09 eAED:0.09 QI:164|0.4|0.16|0.83|0.4|0.16|6|0|359; (*GB) gi|297736840|emb|CBI26041.3| (e_value=7e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0DVX2|RH50_ORYSJ (e_value=2e-51) DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2;; (*TAIR) AT3G06980.1 (e_value=9e-41) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr3:2201531-2204662 FORWARD LENGTH=781;; (*ITAG) Solyc11g045190.1.1 (e_value=2e-132) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36914018-36920923 transcript_region:SL2.40ch11:36914018..36920923- go_terms:GO:0008026 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- C2LJD4_PROMI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00022637g0010.1 protein AED:0.37 eAED:0.41 QI:0|0.5|0.42|0.85|0.83|0.57|7|849|329; (*GB) gi|297736840|emb|CBI26041.3| (e_value=2e-145) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUG7|RH50_ARATH (e_value=2e-137) DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2;; (*TAIR) AT3G06980.1 (e_value=2e-138) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr3:2201531-2204662 FORWARD LENGTH=781;; (*ITAG) Solyc11g045180.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36898345-36899171 transcript_region:SL2.40ch11:36898345..36899171- go_terms:GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- D3BPQ9_POLPA); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00015561g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.57|0.85|0.66|0.71|7|0|434; (*GB) gi|224058347|ref|XP_002299485.1| (e_value=0.0) proline transporter [Populus trichocarpa];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=5e-43) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G41800.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr5:16733842-16735888 FORWARD LENGTH=452;; (*ITAG) Solyc08g082080.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62143392-62149197 transcript_region:SL2.40ch08:62143392..62149197+ go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** Q8GZV5_SOLLC); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00028247g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.62|1|1|1|8|302|344; (*GB) gi|225463339|ref|XP_002269192.1| (e_value=1e-121) PREDICTED: histidine protein methyltransferase 1 homolog [Vitis vinifera];; (*SWP) sp|Q55DL2|MET18_DICDI (e_value=7e-39) Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1;; (*TAIR) AT4G14000.1 (e_value=3e-112) | Symbols: | Putative methyltransferase family protein | chr4:8090851-8092347 FORWARD LENGTH=290;; (*ITAG) Solyc12g098530.1.1 (e_value=1e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64345485-64348979 transcript_region:SL2.40ch12:64345485..64348979- functional_description:"GM16957 (Fragment) (AHRD V1 *--- B4IQH2_DROSE); contains Interpro domain(s) IPR019410 Methyltransferase-16, putative "; NbS00062200g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.5|1|0.66|0.75|4|0|178; (*GB) gi|225451691|ref|XP_002278518.1| (e_value=4e-90) PREDICTED: acetyl-coenzyme A synthetase, cytoplasmic [Vitis vinifera];; (*SWP) sp|B9DGD6|ACS_ARATH (e_value=3e-85) Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1;; (*TAIR) AT5G36880.2 (e_value=3e-86) | Symbols: ACS | acetyl-CoA synthetase | chr5:14534961-14540296 REVERSE LENGTH=743;; (*ITAG) Solyc07g017860.2.1 (e_value=6e-99) genomic_reference:SL2.40ch07 gene_region:8204531-8209762 transcript_region:SL2.40ch07:8204531..8209762+ go_terms:GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- Q2J3D0_RHOP2); contains Interpro domain(s) IPR011904 Acetate--CoA ligase "; GO:0003987 NbS00000733g0006.1 protein AED:0.38 eAED:0.39 QI:0|0|0|0.5|1|1|4|0|388; (*GB) gi|225451243|ref|XP_002276425.1| (e_value=1e-86) PREDICTED: uncharacterized protein LOC100253879 [Vitis vinifera];; (*TAIR) AT5G28040.1 (e_value=3e-68) | Symbols: | DNA-binding storekeeper protein-related transcriptional regulator | chr5:10037654-10038937 REVERSE LENGTH=427;; (*ITAG) Solyc01g097890.2.1 (e_value=1e-140) genomic_reference:SL2.40ch01 gene_region:80342215-80343929 transcript_region:SL2.40ch01:80342215..80343929- functional_description:"Os03g0370250 protein (Fragment) (AHRD V1 *--- C7J0C0_ORYSJ); contains Interpro domain(s) IPR007592 Protein of unknown function DUF573 "; NbS00000733g0009.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|0.75|1|1|4|0|166; (*GB) gi|255542370|ref|XP_002512248.1| (e_value=1e-94) Guanine deaminase, putative [Ricinus communis];; (*SWP) sp|O34598|GUAD_BACSU (e_value=9e-32) Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1;; (*TAIR) AT5G28050.1 (e_value=9e-90) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:10044209-10045755 REVERSE LENGTH=185;; (*ITAG) Solyc01g097880.2.1 (e_value=3e-90) genomic_reference:SL2.40ch01 gene_region:80335950-80341370 transcript_region:SL2.40ch01:80335950..80341370+ go_terms:GO:0016787,GO:0003824 functional_description:"Deaminase (AHRD V1 *-*- D6B5U0_9ACTO); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0016787,GO:0003824 NbS00000733g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|225451241|ref|XP_002276406.1| (e_value=3e-62) PREDICTED: rubredoxin-like [Vitis vinifera];; (*SWP) sp|Q9XBL8|RUBR_ANAVT (e_value=2e-16) Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rub PE=3 SV=1;; (*TAIR) AT1G54500.1 (e_value=4e-55) | Symbols: | Rubredoxin-like superfamily protein | chr1:20357084-20357671 REVERSE LENGTH=195;; (*ITAG) Solyc01g097910.2.1 (e_value=4e-83) genomic_reference:SL2.40ch01 gene_region:80353631-80354713 transcript_region:SL2.40ch01:80353631..80354713+ go_terms:GO:0046872 functional_description:"Rubredoxin family protein (AHRD V1 *-*- D7KP11_ARALY); contains Interpro domain(s) IPR004039 Rubredoxin-type Fe(Cys)4 protein "; GO:0046872 NbS00000733g0004.1 protein AED:0.31 eAED:0.31 QI:277|0.33|0.5|1|1|0.75|4|0|135; (*GB) gi|358248670|ref|NP_001240176.1| (e_value=1e-50) uncharacterized protein LOC100802918 [Glycine max];; (*SWP) sp|Q8LC83|RS242_ARATH (e_value=2e-49) 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2;; (*TAIR) AT5G28060.1 (e_value=2e-50) | Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=3e-53) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbC25628467g0002.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|94; (*ITAG) Solyc03g082850.2.1 (e_value=1e-32) genomic_reference:SL2.40ch03 gene_region:46244596-46250538 transcript_region:SL2.40ch03:46244596..46250538- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease family protein (AHRD V1 *--- Q23B12_TETTH); contains Interpro domain(s) IPR002782 Protein of unknown function DUF82 "; GO:0003676,GO:0005622 NbS00009848g0002.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|1|1|2|0|158; (*GB) gi|348659053|gb|AEP82764.1| (e_value=1e-43) terpene synthase [Solanum lycopersicum];; (*SWP) sp|C1K5M3|PHS1_SOLLC (e_value=4e-45) Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic OS=Solanum lycopersicum GN=PHS1 PE=1 SV=1;; (*TAIR) AT1G79460.1 (e_value=2e-29) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785;; (*ITAG) Solyc08g005720.2.1 (e_value=3e-43) genomic_reference:SL2.40ch08 gene_region:578243-586720 transcript_region:SL2.40ch08:578243..586720+ go_terms:GO:0009899 functional_description:"Ent-kaurene synthase-like protein 1 (AHRD V1 **** Q673F9_HORVD); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0009899 NbS00022711g0001.1 protein AED:0.23 eAED:0.56 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|133711808|gb|ABO36626.1| (e_value=5e-42) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=6e-18) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=5e-19) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc10g079220.2.1 (e_value=9e-45) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00022711g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|0|1|0|64; (*GB) gi|224114698|ref|XP_002316833.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=5e-23) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=3e-23) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc12g056020.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47348883-47350234 transcript_region:SL2.40ch12:47348883..47350234+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00014681g0004.1 protein AED:0.12 eAED:0.12 QI:29|1|1|1|0.66|0.75|4|131|168; (*GB) gi|225436319|ref|XP_002267642.1| (e_value=2e-74) PREDICTED: uncharacterized protein LOC100243168 [Vitis vinifera];; (*TAIR) AT2G27740.1 (e_value=2e-57) | Symbols: | Family of unknown function (DUF662) | chr2:11822800-11823575 FORWARD LENGTH=174;; (*ITAG) Solyc11g066970.1.1 (e_value=7e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49833889-49836265 transcript_region:SL2.40ch11:49833889..49836265- functional_description:"cDNA clone J033118E13 full insert sequence (AHRD V1 **-- B7EU28_ORYSJ); contains Interpro domain(s) IPR007033 Protein of unknown function DUF662 "; NbS00030893g0003.1 protein AED:0.16 eAED:0.16 QI:362|1|1|1|0.4|0.5|6|165|166; (*GB) gi|357520809|ref|XP_003630693.1| (e_value=1e-89) Derlin-1 [Medicago truncatula];; (*SWP) sp|Q8VZU9|DERL1_ARATH (e_value=1e-85) Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1;; (*TAIR) AT4G29330.1 (e_value=1e-86) | Symbols: DER1 | DERLIN-1 | chr4:14444937-14446952 FORWARD LENGTH=266;; (*ITAG) Solyc05g026310.2.1 (e_value=8e-95) genomic_reference:SL2.40ch05 gene_region:40385875-40400417 transcript_region:SL2.40ch05:40385875..40400417- go_terms:GO:0005515 functional_description:"Derlin-3 (AHRD V1 ***- B6U3C7_MAIZE); contains Interpro domain(s) IPR007599 Der1-like "; GO:0005515 NbS00030893g0006.1 protein AED:0.24 eAED:0.25 QI:316|0.85|0.62|1|0.57|0.62|8|0|532; (*GB) gi|255584422|ref|XP_002532943.1| (e_value=2e-121) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P30640|BUD13_CAEEL (e_value=6e-18) BUD13 homolog OS=Caenorhabditis elegans GN=R08D7.1 PE=2 SV=1;; (*TAIR) AT1G31870.2 (e_value=1e-107) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11437269-11439821 FORWARD LENGTH=561;; (*ITAG) Solyc03g033950.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9921419-9926687 transcript_region:SL2.40ch03:9921419..9926687- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor CWC26 (AHRD V1 *--- A8P4C7_COPC7); contains Interpro domain(s) IPR018609 Protein of unknown function DUF2050, pre-mRNA-splicing factor "; GO:0005515 NbS00007280g0113.1 protein AED:0.18 eAED:0.18 QI:480|0.8|0.66|1|0.4|0.66|6|0|143 NbS00007280g0115.1 protein AED:0.10 eAED:0.10 QI:174|0.71|0.73|1|0.57|0.6|15|410|803 NbS00007280g0114.1 protein AED:0.20 eAED:0.37 QI:0|0|0|1|0|0|4|0|206 NbS00016505g0013.1 protein AED:0.10 eAED:0.10 QI:91|0.87|0.77|1|0.75|0.77|9|208|465; (*GB) gi|328461717|gb|AEB15968.1| (e_value=0.0) ABA 8'-hydroxylase CYPA4 variant 1 [Solanum tuberosum];; (*SWP) sp|Q9LJK2|ABAH4_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4 PE=2 SV=2;; (*TAIR) AT3G19270.1 (e_value=0.0) | Symbols: CYP707A4 | cytochrome P450, family 707, subfamily A, polypeptide 4 | chr3:6673885-6676400 REVERSE LENGTH=468;; (*ITAG) Solyc01g108210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87331575-87335081 transcript_region:SL2.40ch01:87331575..87335081+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00005616g0006.1 protein AED:0.15 eAED:0.15 QI:251|0.96|0.96|1|0.88|0.89|28|583|1195; (*GB) gi|225437598|ref|XP_002271147.1| (e_value=0.0) PREDICTED: nodal modulator 1 [Vitis vinifera];; (*SWP) sp|Q15155|NOMO1_HUMAN (e_value=6e-148) Nodal modulator 1 OS=Homo sapiens GN=NOMO1 PE=1 SV=5;; (*TAIR) AT3G62360.1 (e_value=0.0) | Symbols: | Carbohydrate-binding-like fold | chr3:23073020-23080455 REVERSE LENGTH=1227;; (*ITAG) Solyc06g009530.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3503973-3531605 transcript_region:SL2.40ch06:3503973..3531605- go_terms:GO:0005515 functional_description:"Nodal modulator 3 (AHRD V1 ***- B0XK54_CULQU); contains Interpro domain(s) IPR013784 Carbohydrate-binding-like fold "; GO:0005515 NbS00008088g0010.1 protein AED:0.13 eAED:0.13 QI:354|1|1|1|1|1|8|457|425; (*GB) gi|296085831|emb|CBI31155.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96EX2|RNFT2_HUMAN (e_value=4e-42) RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2;; (*TAIR) AT5G01960.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc03g095450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50014714-50023523 transcript_region:SL2.40ch03:50014714..50023523- go_terms:GO:0008270 functional_description:"RING finger protein 141 (AHRD V1 *--- RN141_CANFA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008088g0014.1 protein AED:0.20 eAED:0.20 QI:247|0.91|0.84|1|0.79|0.8|25|511|843; (*GB) gi|225454296|ref|XP_002275449.1| (e_value=0.0) PREDICTED: exocyst complex component 5 [Vitis vinifera];; (*SWP) sp|Q8RVQ5|EXOC5_ARATH (e_value=0.0) Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2;; (*TAIR) AT5G12370.2 (e_value=0.0) | Symbols: SEC10 | exocyst complex component sec10 | chr5:4003002-4008445 REVERSE LENGTH=825;; (*ITAG) Solyc03g095410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49957019-49986156 transcript_region:SL2.40ch03:49957019..49986156+ go_terms:GO:0005737 functional_description:"Exocyst complex component protein (AHRD V1 ***- A8NX01_COPC7); contains Interpro domain(s) IPR009976 Exocyst complex component Sec10 "; GO:0005737 NbS00008088g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|282; (*GB) gi|193527448|gb|ACF19789.1| (e_value=2e-17) NAC transcription factor [Nicotiana tabacum];; (*ITAG) Solyc01g021730.2.1 (e_value=7e-51) genomic_reference:SL2.40ch01 gene_region:32776998-32778063 transcript_region:SL2.40ch01:32776998..32778063- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IHI9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00005900g0005.1 protein AED:0.08 eAED:0.12 QI:0|0.16|0|1|0.33|0.28|7|0|589; (*GB) gi|225436528|ref|XP_002277127.1| (e_value=0.0) PREDICTED: high affinity nitrate transporter 2.4 [Vitis vinifera];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=0.0) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=0.0) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g010250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:5518796-5521038 transcript_region:SL2.40ch06:5518796..5521038- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00005900g0103.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|138 NbS00005900g0114.1 protein AED:0.19 eAED:0.21 QI:0|0.6|0.27|1|0.9|0.90|11|0|382 NbS00005900g0113.1 protein AED:0.44 eAED:0.44 QI:0|1|0|1|1|0.5|2|0|73 NbS00005900g0112.1 protein AED:0.13 eAED:0.18 QI:0|1|0|1|1|1|2|0|233 NbS00006241g0007.1 protein AED:0.11 eAED:0.19 QI:0|0.5|0.33|1|0|0|3|31|414; (*GB) gi|225470070|ref|XP_002269458.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100259805 [Vitis vinifera];; (*TAIR) AT2G44730.1 (e_value=2e-28) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr2:18437447-18438565 REVERSE LENGTH=372;; (*ITAG) Solyc08g007170.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1738242-1739468 transcript_region:SL2.40ch08:1738242..1739468+ functional_description:"Transcription factor (AHRD V1 *-*- D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00006241g0009.1 protein AED:0.20 eAED:0.20 QI:536|1|1|1|0.5|1|3|266|96; (*GB) gi|255566759|ref|XP_002524363.1| (e_value=3e-58) transcription factor, putative [Ricinus communis];; (*TAIR) AT5G47110.1 (e_value=2e-52) | Symbols: LIL3:2 | Chlorophyll A-B binding family protein | chr5:19134218-19135238 REVERSE LENGTH=258;; (*ITAG) Solyc08g007180.2.1 (e_value=1e-62) genomic_reference:SL2.40ch08 gene_region:1742086-1745512 transcript_region:SL2.40ch08:1742086..1745512- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- A9P991_POPTR)"; NbS00006502g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|224062723|ref|XP_002300879.1| (e_value=9e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=4e-40) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT2G42940.1 (e_value=2e-95) | Symbols: | Predicted AT-hook DNA-binding family protein | chr2:17862497-17863270 REVERSE LENGTH=257;; (*ITAG) Solyc07g056300.1.1 (e_value=6e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61474340-61475095 transcript_region:SL2.40ch07:61474340..61475095- go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00006502g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.66|1|1|3|0|170; (*ITAG) Solyc01g073870.2.1 (e_value=9e-34) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00006502g0011.1 protein AED:0.09 eAED:0.09 QI:0|0.33|0.25|1|0.33|0.75|4|0|348; (*GB) gi|225423446|ref|XP_002273801.1| (e_value=6e-115) PREDICTED: exopolygalacturonase [Vitis vinifera];; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=8e-93) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT1G78400.1 (e_value=1e-106) | Symbols: | Pectin lyase-like superfamily protein | chr1:29498281-29499682 REVERSE LENGTH=404;; (*ITAG) Solyc07g056290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61470406-61473987 transcript_region:SL2.40ch07:61470406..61473987+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00020814g0017.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|3|0|197; (*GB) gi|113205445|gb|AAW28576.2| (e_value=3e-18) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g042630.1.1 (e_value=9e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43420409-43423973 transcript_region:SL2.40ch12:43420409..43423973- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00020814g0020.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.5|0|0.5|2|0|152 NbS00020814g0018.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|191|124; (*GB) gi|312283105|dbj|BAJ34418.1| (e_value=5e-49) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=2e-49) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=2e-50) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc09g075150.2.1 (e_value=2e-53) genomic_reference:SL2.40ch09 gene_region:62444486-62447482 transcript_region:SL2.40ch09:62444486..62447482+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00020814g0006.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|94; (*GB) gi|297743898|emb|CBI36868.3| (e_value=9e-32) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q683I9|PP295_ARATH (e_value=1e-26) Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1;; (*TAIR) AT3G62890.1 (e_value=1e-27) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23246168-23247973 FORWARD LENGTH=573;; (*ITAG) Solyc09g075170.1.1 (e_value=2e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62452108-62453457 transcript_region:SL2.40ch09:62452108..62453457+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00020814g0022.1 protein AED:0.31 eAED:0.32 QI:0|0|0|1|0|0|3|0|212; (*GB) gi|359479914|ref|XP_002268148.2| (e_value=5e-52) PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera];; (*SWP) sp|Q683I9|PP295_ARATH (e_value=3e-30) Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1;; (*TAIR) AT3G62890.1 (e_value=2e-31) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23246168-23247973 FORWARD LENGTH=573;; (*ITAG) Solyc09g075170.1.1 (e_value=5e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62452108-62453457 transcript_region:SL2.40ch09:62452108..62453457+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00020814g0019.1 protein AED:0.29 eAED:0.33 QI:0|0|0|1|0|0|2|0|199; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-56) hypothetical protein [Nicotiana tabacum]; NbS00035534g0004.1 protein AED:0.09 eAED:0.12 QI:0|0.5|0|1|0.5|0.66|3|0|1003; (*GB) gi|15242850|ref|NP_200579.1| (e_value=0.0) heat shock protein-like protein [Arabidopsis thaliana];; (*SWP) sp|O67588|CLPB_AQUAE (e_value=2e-12) Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB PE=3 SV=1;; (*TAIR) AT5G57710.1 (e_value=0.0) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr5:23384794-23388052 FORWARD LENGTH=990;; (*ITAG) Solyc07g006540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1345087-1349250 transcript_region:SL2.40ch07:1345087..1349250- functional_description:"Chaperone protein ClpB (AHRD V1 *--- C7HTI8_9FIRM)"; NbS00036544g0015.1 protein AED:0.23 eAED:0.31 QI:57|0.25|0.4|1|0.25|0.6|5|373|201; (*GB) gi|225468779|ref|XP_002262663.1| (e_value=7e-47) PREDICTED: uncharacterized protein LOC100246586 [Vitis vinifera];; (*TAIR) AT5G48655.3 (e_value=4e-32) | Symbols: | RING/U-box superfamily protein | chr5:19731575-19732486 REVERSE LENGTH=203;; (*ITAG) Solyc09g059450.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:50062176-50065717 transcript_region:SL2.40ch09:50062176..50065717+ functional_description:"Unknown Protein (AHRD V1)"; NbS00036544g0007.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|280; (*ITAG) Solyc07g041360.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49857890-49858318 transcript_region:SL2.40ch07:49857890..49858318- functional_description:"Unknown Protein (AHRD V1)"; NbS00036544g0004.1 protein AED:0.15 eAED:0.16 QI:564|0.85|0.87|1|0.28|0.62|8|316|231; (*GB) gi|255583996|ref|XP_002532744.1| (e_value=2e-142) Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis];; (*SWP) sp|Q42712|FATA_CORSA (e_value=9e-137) Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1;; (*TAIR) AT4G13050.1 (e_value=1e-135) | Symbols: | Acyl-ACP thioesterase | chr4:7617739-7619355 FORWARD LENGTH=367;; (*ITAG) Solyc06g083380.2.1 (e_value=3e-141) genomic_reference:SL2.40ch06 gene_region:45086448-45091016 transcript_region:SL2.40ch06:45086448..45091016+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** D7RU32_CAPAN); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00054422g0003.1 protein AED:0.09 eAED:0.13 QI:0|0.16|0|1|0.16|0.14|7|0|318; (*GB) gi|255567080|ref|XP_002524522.1| (e_value=1e-54) protein with unknown function [Ricinus communis];; (*TAIR) AT1G53460.1 (e_value=5e-43) | Symbols: | BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). | chr1:19954558-19956509 REVERSE LENGTH=314;; (*ITAG) Solyc10g007440.2.1 (e_value=4e-102) genomic_reference:SL2.40ch10 gene_region:1803609-1807729 transcript_region:SL2.40ch10:1803609..1807729+ functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 *--- D7KYC9_ARALY)"; NbS00008987g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|508; (*GB) gi|84873488|gb|ABC67804.1| (e_value=0.0) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=0.0) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00008987g0010.1 protein AED:0.18 eAED:0.19 QI:0|0|0.5|1|1|1|2|0|455; (*GB) gi|225443776|ref|XP_002271643.1| (e_value=0.0) PREDICTED: CBL-interacting protein kinase 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LWM4|CIPK5_ORYSJ (e_value=0.0) CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G45820.1 (e_value=0.0) | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting protein kinase 20 | chr5:18587081-18588400 REVERSE LENGTH=439;; (*ITAG) Solyc02g072540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36307673-36309670 transcript_region:SL2.40ch02:36307673..36309670- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** C4P7W5_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00002660g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.3|0.54|1|1|1|11|468|1060; (*GB) gi|255545090|ref|XP_002513606.1| (e_value=0.0) multidrug resistance-associated protein 1, 3 (mrp1, 3), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q9LYS2|AB10C_ARATH (e_value=0.0) ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2;; (*TAIR) AT3G59140.1 (e_value=0.0) | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453;; (*ITAG) Solyc06g036490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:22794728-22799187 transcript_region:SL2.40ch06:22794728..22799187- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GX56_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00002660g0010.1 protein AED:0.06 eAED:0.06 QI:95|1|1|1|0.75|0.8|5|255|863; (*GB) gi|255545116|ref|XP_002513619.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FLV4|Y5248_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1;; (*TAIR) AT5G24080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:8139334-8141014 REVERSE LENGTH=470;; (*ITAG) Solyc06g036470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:22789505-22793021 transcript_region:SL2.40ch06:22789505..22793021+ go_terms:GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00003556g0007.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|426; (*GB) gi|356554415|ref|XP_003545542.1| (e_value=3e-115) PREDICTED: uncharacterized protein LOC100811524 [Glycine max];; (*TAIR) AT2G24530.1 (e_value=4e-95) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:10422597-10423820 FORWARD LENGTH=407;; (*ITAG) Solyc03g117820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60892138-60893394 transcript_region:SL2.40ch03:60892138..60893394+ functional_description:"AT2G14850 protein (Fragment) (AHRD V1 *-*- B9DHZ5_ARATH)"; NbS00003556g0034.1 protein AED:0.15 eAED:0.15 QI:399|0.70|0.77|1|0.58|0.55|18|353|613; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=0.0) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=6e-104) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc03g117790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003556g0027.1 protein AED:0.25 eAED:0.25 QI:127|0.88|0.8|1|0.55|0.6|10|498|487; (*GB) gi|224143851|ref|XP_002325096.1| (e_value=3e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=2e-155) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=2e-156) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc03g117800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60883263-60887328 transcript_region:SL2.40ch03:60883263..60887328+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00003556g0024.1 protein AED:0.29 eAED:0.29 QI:150|1|1|1|0.66|0.42|7|442|411; (*GB) gi|225443227|ref|XP_002270610.1| (e_value=0.0) PREDICTED: probable serine incorporator [Vitis vinifera];; (*SWP) sp|A7S4N4|SERIC_NEMVE (e_value=7e-31) Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1;; (*TAIR) AT1G16180.2 (e_value=0.0) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr1:5540905-5542670 FORWARD LENGTH=412;; (*ITAG) Solyc03g117770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60854347-60859485 transcript_region:SL2.40ch03:60854347..60859485+ go_terms:GO:0005515,GO:0015194 functional_description:"Serine incorporator 1 (AHRD V1 **-* B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0005515,GO:0015194 NbS00003556g0033.1 protein AED:0.55 eAED:0.58 QI:0|0|0|0.4|1|1|5|0|317; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-19) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc10g047840.1.1 (e_value=3e-39) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003556g0030.1 protein AED:0.00 eAED:0.00 QI:301|1|1|1|1|1|2|525|95; (*GB) gi|224057190|ref|XP_002299164.1| (e_value=7e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT5G43150.1 (e_value=6e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17325076-17325689 FORWARD LENGTH=91;; (*ITAG) Solyc03g117840.2.1 (e_value=1e-51) genomic_reference:SL2.40ch03 gene_region:60899545-60902260 transcript_region:SL2.40ch03:60899545..60902260- functional_description:"Unknown Protein (AHRD V1)"; NbS00003556g0040.1 protein AED:0.28 eAED:0.28 QI:0|0.75|0.8|0.8|0.75|0.4|5|651|282; (*GB) gi|224144230|ref|XP_002325227.1| (e_value=1e-144) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9W0|AB17I_ARATH (e_value=6e-133) ABC transporter I family member 17 OS=Arabidopsis thaliana GN=ABCI17 PE=2 SV=1;; (*TAIR) AT1G67940.1 (e_value=5e-134) | Symbols: ATNAP3, AtSTAR1, NAP3 | non-intrinsic ABC protein 3 | chr1:25477805-25478667 FORWARD LENGTH=263;; (*ITAG) Solyc03g117810.2.1 (e_value=5e-167) genomic_reference:SL2.40ch03 gene_region:60887618-60890024 transcript_region:SL2.40ch03:60887618..60890024- go_terms:GO:0015415 functional_description:"Phosphate import ATP-binding protein pstB 1 (AHRD V1 **** B6UHM7_MAIZE); contains Interpro domain(s) IPR005670 Phosphate transport system permease protein 1 "; GO:0015415 NbS00003556g0037.1 protein AED:0.29 eAED:0.29 QI:187|0.91|0.84|1|0.83|0.76|13|0|380; (*GB) gi|356521678|ref|XP_003529480.1| (e_value=5e-169) PREDICTED: putative DNA repair protein RAD23-1-like isoform 1 [Glycine max];; (*SWP) sp|Q84L33|RD23A_ARATH (e_value=2e-165) Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3;; (*TAIR) AT1G79650.2 (e_value=5e-168) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365;; (*ITAG) Solyc03g117780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60859826-60864595 transcript_region:SL2.40ch03:60859826..60864595- go_terms:GO:0031593 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593 NbS00003556g0039.1 protein AED:0.54 eAED:0.72 QI:0|0|0|0.66|1|1|3|0|67 NbS00003556g0021.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|128 NbS00003556g0038.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0|4|0|140; (*GB) gi|113205400|gb|AAU90303.2| (e_value=2e-20) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc00g027120.1.1 (e_value=1e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00003556g0032.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|2|0|111; (*ITAG) Solyc08g016610.1.1 (e_value=6e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7903101-7906221 transcript_region:SL2.40ch08:7903101..7906221- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00034383g0002.1 protein AED:0.11 eAED:0.24 QI:0|0|0|1|1|1|2|0|357; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=7e-68) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106510.2.1 (e_value=9e-135) genomic_reference:SL2.40ch01 gene_region:86134498-86135961 transcript_region:SL2.40ch01:86134498..86135961- functional_description:"F-box protein family-like (AHRD V1 ***- Q6ZCS3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00034383g0007.1 protein AED:0.19 eAED:0.19 QI:22|0|0|1|0|0|2|0|107; (*ITAG) Solyc01g106120.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:85852293-85854308 transcript_region:SL2.40ch01:85852293..85854308+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005202g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0.25|1|0|0|4|0|285; (*GB) gi|224129394|ref|XP_002328706.1| (e_value=2e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT1G80160.2 (e_value=5e-30) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151280-30151930 FORWARD LENGTH=141;; (*ITAG) Solyc01g103590.2.1 (e_value=1e-66) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00001764g0003.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.4|1|1|5|0|730; (*GB) gi|302398727|gb|ADL36658.1| (e_value=0.0) C3HL domain class transcription factor [Malus x domestica];; (*SWP) sp|P93755|C3H30_ARATH (e_value=0.0) Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2;; (*TAIR) AT2G41900.1 (e_value=0.0) | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716;; (*ITAG) Solyc03g063680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:32748983-32751070 transcript_region:SL2.40ch03:32748983..32751070+ go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 30 (AHRD V1 ***- C3H30_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0003700 NbS00040769g0006.1 protein AED:0.32 eAED:0.32 QI:291|1|1|1|0.87|0.77|9|278|200; (*GB) gi|84626822|gb|ABC59814.1| (e_value=4e-146) small GTPase Rab5b [Nicotiana tabacum];; (*SWP) sp|Q9CB01|RABF1_ARATH (e_value=2e-126) Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1;; (*TAIR) AT3G54840.1 (e_value=2e-127) | Symbols: ARA6, ATRABF1, ARA-6, ATRAB5C | Ras-related small GTP-binding family protein | chr3:20318597-20320782 FORWARD LENGTH=202;; (*ITAG) Solyc11g008430.1.1 (e_value=4e-145) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2614324-2620969 transcript_region:SL2.40ch11:2614324..2620969- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00040769g0007.1 protein AED:0.15 eAED:0.20 QI:50|0|0|1|0|0|2|0|197; (*GB) gi|82470777|gb|ABB77425.1| (e_value=4e-33) Skp1-like protein 3 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=7e-30) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=6e-31) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008230.1.1 (e_value=8e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2466407-2466883 transcript_region:SL2.40ch11:2466407..2466883+ go_terms:GO:0005515 functional_description:"SKP1-like 1 (AHRD V1 ***- B6CNU7_PETHY); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00001876g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.18|0.81|0.8|0.90|11|0|1451; (*GB) gi|297746281|emb|CBI16337.3| (e_value=6e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M658|MOM1_ARATH (e_value=2e-24) Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1;; (*TAIR) AT1G08060.2 (e_value=1e-25) | Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001;; (*ITAG) Solyc11g069610.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51330374-51341104 transcript_region:SL2.40ch11:51330374..51341104- functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N465_POPTR)"; NbS00004135g0009.1 protein AED:0.15 eAED:0.15 QI:199|1|1|1|0|0|3|129|69 NbS00004135g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.8|1|0|0|5|687|606; (*GB) gi|22128591|gb|AAM52341.1| (e_value=0.0) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=2e-134) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=1e-135) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00004135g0002.1 protein AED:0.26 eAED:0.42 QI:0|0|0|1|1|1|3|0|468; (*GB) gi|297744703|emb|CBI37965.3| (e_value=4e-180) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CAA8|PP108_ARATH (e_value=9e-74) Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1;; (*TAIR) AT1G68930.1 (e_value=7e-75) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:25918314-25920545 FORWARD LENGTH=743;; (*ITAG) Solyc10g054730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51283241-51284677 transcript_region:SL2.40ch10:51283241..51284677- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004135g0010.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0.5|2|0|237; (*GB) gi|22128587|gb|AAM52339.1| (e_value=2e-97) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=4e-42) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=3e-43) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007740.1.1 (e_value=6e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00044054g0007.1 protein AED:0.26 eAED:0.26 QI:177|1|1|1|0.85|1|8|707|489; (*GB) gi|5734585|emb|CAB52796.1| (e_value=0.0) putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=1e-97) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT2G29990.1 (e_value=0.0) | Symbols: NDA2 | alternative NAD(P)H dehydrogenase 2 | chr2:12793562-12795913 REVERSE LENGTH=508;; (*ITAG) Solyc06g007160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1218194-1222072 transcript_region:SL2.40ch06:1218194..1222072- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** Q38A31_9TRYP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00012949g0001.1 protein AED:0.54 eAED:0.73 QI:0|0|0|0.66|1|1|3|0|95 NbS00009206g0014.1 protein AED:0.36 eAED:0.44 QI:235|0.57|0.75|1|0.14|0.12|8|0|256; (*GB) gi|255564059|ref|XP_002523028.1| (e_value=4e-73) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q7XA86|ZDH11_ARATH (e_value=2e-48) Probable S-acyltransferase At3g51390 OS=Arabidopsis thaliana GN=At3g51390 PE=2 SV=1;; (*TAIR) AT3G51390.1 (e_value=2e-49) | Symbols: | DHHC-type zinc finger family protein | chr3:19075718-19077966 FORWARD LENGTH=340;; (*ITAG) Solyc02g083150.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:41231665-41238118 transcript_region:SL2.40ch02:41231665..41238118- go_terms:GO:0008270 functional_description:"Palmitoyltransferase (AHRD V1 *-*- C1FD39_9CHLO); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00009206g0012.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.5|1|1|1|4|0|298; (*GB) gi|224133540|ref|XP_002327620.1| (e_value=4e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHQ1|GDL80_ARATH (e_value=2e-41) GDSL esterase/lipase At5g37690 OS=Arabidopsis thaliana GN=At5g37690 PE=2 SV=1;; (*TAIR) AT5G37690.1 (e_value=1e-42) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:14973610-14976115 REVERSE LENGTH=356;; (*ITAG) Solyc02g083160.1.1 (e_value=2e-146) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41240608-41242196 transcript_region:SL2.40ch02:41240608..41242196+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00009206g0003.1 protein AED:0.18 eAED:0.18 QI:982|1|1|1|0.75|0.61|13|762|614; (*GB) gi|350535989|ref|NP_001234480.1| (e_value=0.0) ribonuclease E [Solanum lycopersicum];; (*SWP) sp|P45175|RNG_HAEIN (e_value=4e-54) Ribonuclease G OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rng PE=3 SV=1;; (*TAIR) AT2G04270.4 (e_value=0.0) | Symbols: RNEE/G | RNAse E/G-like | chr2:1476506-1480014 FORWARD LENGTH=713;; (*ITAG) Solyc02g083140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41224359-41230390 transcript_region:SL2.40ch02:41224359..41230390+ go_terms:GO:0004521 functional_description:"Ribonuclease E (AHRD V1 ***- B0LV36_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site "; GO:0004521 NbS00019995g0011.1 protein AED:0.05 eAED:0.05 QI:1384|1|1|1|1|1|3|497|111; (*GB) gi|168039876|ref|XP_001772422.1| (e_value=2e-62) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|P0C1I5|PPIL3_RHIO9 (e_value=5e-43) Peptidyl-prolyl cis-trans isomerase-like 3 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp4 PE=3 SV=1;; (*TAIR) AT1G01940.1 (e_value=2e-64) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr1:323082-324719 FORWARD LENGTH=160;; (*ITAG) Solyc08g006090.2.1 (e_value=8e-66) genomic_reference:SL2.40ch08 gene_region:833901-839601 transcript_region:SL2.40ch08:833901..839601+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q9LPC7_ARATH); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00061734g0002.1 protein AED:0.42 eAED:0.51 QI:0|0|0|1|1|1|2|0|60; (*ITAG) Solyc05g005260.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:208914-209765 transcript_region:SL2.40ch05:208914..209765- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00025458g0005.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|134; (*GB) gi|332308980|gb|AEE39461.1| (e_value=8e-47) SLF-interacting SKP1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SL93|ASK3_ARATH (e_value=5e-19) SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1;; (*TAIR) AT4G34210.1 (e_value=1e-21) | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461 FORWARD LENGTH=152;; (*ITAG) Solyc11g008400.1.1 (e_value=6e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00001854g0013.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|130; (*GB) gi|255536727|ref|XP_002509430.1| (e_value=4e-40) Protein SIS1, putative [Ricinus communis];; (*TAIR) AT2G20560.1 (e_value=3e-25) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc02g077670.2.1 (e_value=5e-38) genomic_reference:SL2.40ch02 gene_region:37137141-37141307 transcript_region:SL2.40ch02:37137141..37141307- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00001854g0009.1 protein AED:0.25 eAED:0.26 QI:33|0|0.33|0.66|0|0.33|3|855|332; (*GB) gi|225464138|ref|XP_002265372.1| (e_value=8e-167) PREDICTED: pentatricopeptide repeat-containing protein At5g46100 [Vitis vinifera];; (*SWP) sp|Q9FNL2|PP418_ARATH (e_value=2e-145) Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1;; (*TAIR) AT5G46100.1 (e_value=2e-146) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:18694316-18695734 REVERSE LENGTH=472;; (*ITAG) Solyc02g077650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37116934-37118373 transcript_region:SL2.40ch02:37116934..37118373- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q513_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001854g0004.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|224125586|ref|XP_002329841.1| (e_value=3e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT5G46090.1 (e_value=2e-96) | Symbols: | Protein of unknown function (DUF679) | chr5:18693485-18694129 FORWARD LENGTH=214;; (*ITAG) Solyc02g077640.1.1 (e_value=9e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37115630-37116259 transcript_region:SL2.40ch02:37115630..37116259+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00001854g0002.1 protein AED:0.17 eAED:0.17 QI:479|0.84|0.8|1|1|1|20|0|1647; (*GB) gi|359483496|ref|XP_002273559.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247033 [Vitis vinifera];; (*TAIR) AT1G28420.1 (e_value=0.0) | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 FORWARD LENGTH=1705;; (*ITAG) Solyc02g077660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37124373-37136943 transcript_region:SL2.40ch02:37124373..37136943+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein EgHBX4 (Fragment) (AHRD V1 *--- HBX4_ECHGR); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0006355,GO:0045449 NbS00003239g0016.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|424; (*GB) gi|225428100|ref|XP_002278196.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera];; (*SWP) sp|Q93YV6|2A5I_ARATH (e_value=1e-101) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2 SV=1;; (*TAIR) AT5G25510.1 (e_value=1e-102) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr5:8882728-8884325 REVERSE LENGTH=500;; (*ITAG) Solyc01g111790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:89732277-89733879 transcript_region:SL2.40ch01:89732277..89733879- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbS00003239g0017.1 protein AED:0.26 eAED:0.28 QI:273|0.92|0.92|1|0.76|0.88|26|0|825; (*GB) gi|356536398|ref|XP_003536725.1| (e_value=0.0) PREDICTED: transportin-1-like isoform 1 [Glycine max];; (*SWP) sp|Q92973|TNPO1_HUMAN (e_value=0.0) Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2;; (*TAIR) AT2G16950.2 (e_value=0.0) | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891;; (*ITAG) Solyc01g111780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89713800-89731648 transcript_region:SL2.40ch01:89713800..89731648+ go_terms:GO:0008320 functional_description:"Importin beta-2 subunit (AHRD V1 **-- C5JY88_AJEDS); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00003239g0005.1 protein AED:0.26 eAED:0.30 QI:0|0|0|1|1|1|2|0|105; (*ITAG) Solyc01g111820.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:89742850-89743437 transcript_region:SL2.40ch01:89742850..89743437+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003239g0019.1 protein AED:0.74 eAED:0.92 QI:0|0|0|0.5|0|0.25|4|0|111 NbS00003239g0015.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|0|0|2|0|475; (*GB) gi|359475003|ref|XP_003631566.1| (e_value=0.0) PREDICTED: uncharacterized transporter lpg1691 isoform 2 [Vitis vinifera];; (*SWP) sp|Q5RKI7|S7A13_RAT (e_value=1e-13) Solute carrier family 7 member 13 OS=Rattus norvegicus GN=Slc7a13 PE=2 SV=1;; (*TAIR) AT1G31830.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr1:11418875-11420362 REVERSE LENGTH=495;; (*ITAG) Solyc01g111800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89734475-89736097 transcript_region:SL2.40ch01:89734475..89736097- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00012795g0016.1 protein AED:0.37 eAED:0.38 QI:0|0.71|0.5|1|0.71|0.75|8|356|433; (*GB) gi|147768857|emb|CAN78133.1| (e_value=0.0) hypothetical protein VITISV_034052 [Vitis vinifera];; (*SWP) sp|Q50228|FMDA_METME (e_value=6e-134) Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1;; (*TAIR) AT4G37560.1 (e_value=0.0) | Symbols: | Acetamidase/Formamidase family protein | chr4:17646489-17648457 FORWARD LENGTH=452;; (*ITAG) Solyc02g092530.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48173217-48178515 transcript_region:SL2.40ch02:48173217..48178515- go_terms:GO:0004328 functional_description:"Formamidase (AHRD V1 **** B9VXW6_LUPAL); contains Interpro domain(s) IPR004304 Acetamidase/Formamidase "; GO:0004328 NbS00012795g0011.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|1|1|2|0|92; (*GB) gi|225438970|ref|XP_002284306.1| (e_value=5e-31) PREDICTED: formamidase isoform 1 [Vitis vinifera];; (*SWP) sp|Q9URY7|FMDA_SCHPO (e_value=4e-15) Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.04 PE=2 SV=1;; (*TAIR) AT4G37560.1 (e_value=8e-27) | Symbols: | Acetamidase/Formamidase family protein | chr4:17646489-17648457 FORWARD LENGTH=452; NbS00012795g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|224; (*GB) gi|225438968|ref|XP_002284296.1| (e_value=3e-97) PREDICTED: LOB domain-containing protein 38 [Vitis vinifera];; (*SWP) sp|Q9FN11|LBD37_ARATH (e_value=4e-83) LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1;; (*TAIR) AT5G67420.1 (e_value=3e-84) | Symbols: LBD37, ASL39 | LOB domain-containing protein 37 | chr5:26904576-26905415 REVERSE LENGTH=250;; (*ITAG) Solyc02g092550.2.1 (e_value=1e-133) genomic_reference:SL2.40ch02 gene_region:48182706-48183792 transcript_region:SL2.40ch02:48182706..48183792+ functional_description:"LOB domain protein 38 (AHRD V1 ***- D7LT02_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00012795g0018.1 protein AED:0.32 eAED:0.32 QI:0|0.66|0.25|1|0.33|0.25|4|0|190; (*GB) gi|225438978|ref|XP_002284329.1| (e_value=3e-108) PREDICTED: UPF0553 protein [Vitis vinifera];; (*SWP) sp|Q54II8|U553_DICDI (e_value=2e-47) UPF0553 protein OS=Dictyostelium discoideum GN=DDB_G0288723 PE=3 SV=1;; (*ITAG) Solyc02g092510.2.1 (e_value=4e-120) genomic_reference:SL2.40ch02 gene_region:48156357-48160516 transcript_region:SL2.40ch02:48156357..48160516+ functional_description:"UPF0553 protein C9orf64 (AHRD V1 **-- CI064_HUMAN); contains Interpro domain(s) IPR019438 Protein of unknown function DUF2419 "; NbS00015117g0001.1 protein AED:0.06 eAED:0.06 QI:148|1|1|1|0.33|0.25|4|95|587; (*GB) gi|224090809|ref|XP_002309091.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P0CI03|PTR28_ARATH (e_value=0.0) Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1;; (*TAIR) AT2G37900.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00015663g0006.1 protein AED:0.19 eAED:0.19 QI:0|0.93|0.93|1|0.8|0.93|16|317|598; (*GB) gi|5931765|emb|CAB56619.1| (e_value=0.0) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=0.0) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.1 (e_value=0.0) | Symbols: ADL1, ADL1A, AG68, DRP1A, RSW9, DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=610;; (*ITAG) Solyc01g095970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00002701g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0.5|2|0|377; (*GB) gi|224133722|ref|XP_002327664.1| (e_value=1e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17530.1 (e_value=9e-13) | Symbols: | F-box and associated interaction domains-containing protein | chr3:6000860-6002026 FORWARD LENGTH=388;; (*ITAG) Solyc06g059810.1.1 (e_value=1e-133) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34103561-34110110 transcript_region:SL2.40ch06:34103561..34110110+ functional_description:"F-box family protein (AHRD V1 *-*- B9N8U5_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00002701g0005.1 protein AED:0.00 eAED:0.00 QI:36|0|0.5|1|0|0.5|2|207|118; (*GB) gi|116778592|gb|ABK20926.1| (e_value=1e-20) unknown [Picea sitchensis];; (*SWP) sp|Q41073|NLTP_PINTA (e_value=2e-21) Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G33355.2 (e_value=5e-16) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc06g059790.2.1 (e_value=2e-42) genomic_reference:SL2.40ch06 gene_region:34079809-34080659 transcript_region:SL2.40ch06:34079809..34080659+ go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** A9NJW5_PICSI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00009539g0006.1 protein AED:0.32 eAED:0.32 QI:0|0.78|0.66|1|0.78|0.8|15|337|550; (*GB) gi|296086169|emb|CBI31610.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4K2A1|FPGS1_ARATH (e_value=0.0) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS1 PE=1 SV=1;; (*TAIR) AT5G05980.2 (e_value=0.0) | Symbols: ATDFB, DFB, FPGS1 | DHFS-FPGS homolog B | chr5:1799738-1804177 REVERSE LENGTH=513;; (*ITAG) Solyc05g052920.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62240025-62249726 transcript_region:SL2.40ch05:62240025..62249726- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9HMM6_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00019672g0007.1 protein AED:0.15 eAED:0.15 QI:390|0.76|0.64|1|0.76|0.64|14|0|850; (*GB) gi|225425928|ref|XP_002267668.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720-like [Vitis vinifera];; (*SWP) sp|C0LGI2|Y1677_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1;; (*TAIR) AT1G67720.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:25386494-25390856 FORWARD LENGTH=929;; (*ITAG) Solyc05g014240.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:7995369-8001652 transcript_region:SL2.40ch05:7995369..8001652- go_terms:GO:0004675 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004675 NbS00013470g0013.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.57|0.85|0.66|0.71|7|0|885; (*GB) gi|225437779|ref|XP_002281404.1| (e_value=0.0) PREDICTED: protein transport protein SEC23 [Vitis vinifera];; (*SWP) sp|A5DA00|SEC23_PICGU (e_value=8e-36) Protein transport protein SEC23 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SEC23 PE=3 SV=3;; (*TAIR) AT4G01810.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc01g080850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72654375-72660542 transcript_region:SL2.40ch01:72654375..72660542- go_terms:GO:0030127 functional_description:"Protein transport protein SEC23 (AHRD V1 ***- C5MDU5_CANTT); contains Interpro domain(s) IPR006900 Sec23/Sec24 helical region "; GO:0030127 NbS00013470g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.2|0|0.66|0.8|0.83|6|0|399; (*GB) gi|356534957|ref|XP_003536017.1| (e_value=6e-51) PREDICTED: uncharacterized protein LOC100816418 [Glycine max];; (*TAIR) AT4G01650.1 (e_value=1e-45) | Symbols: | Polyketide cyclase / dehydrase and lipid transport protein | chr4:704578-705866 REVERSE LENGTH=288;; (*ITAG) Solyc01g068620.2.1 (e_value=6e-69) genomic_reference:SL2.40ch01 gene_region:70221049-70224411 transcript_region:SL2.40ch01:70221049..70224411+ functional_description:"Cyclase/dehydrase (AHRD V1 *-*- D7E269_NOSA0); contains Interpro domain(s) IPR005031 Streptomyces cyclase/dehydrase "; NbS00019950g0116.1 protein AED:0.39 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|100 NbS00019950g0114.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|312 NbS00019950g0115.1 protein AED:0.37 eAED:0.41 QI:0|0|0|1|0|0|3|0|115 NbS00026851g0003.1 protein AED:0.23 eAED:0.23 QI:75|1|0.66|1|0.6|0.5|6|0|747; (*GB) gi|224134268|ref|XP_002327797.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O23225|PUB5_ARATH (e_value=7e-121) U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=3;; (*TAIR) AT4G36550.1 (e_value=5e-122) | Symbols: | ARM repeat superfamily protein | chr4:17245400-17247926 REVERSE LENGTH=718;; (*ITAG) Solyc02g085140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42693111-42697063 transcript_region:SL2.40ch02:42693111..42697063- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- Q1EPA8_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00007292g0003.1 protein AED:0.53 eAED:0.56 QI:0|0.66|0|0.75|1|0.75|4|0|118; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=1e-39) D1 protease precursor [Nicotiana plumbaginifolia];; (*TAIR) AT4G17740.2 (e_value=3e-37) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=7e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00040631g0003.1 protein AED:0.16 eAED:0.16 QI:239|1|1|1|1|1|2|570|158; (*GB) gi|6561156|gb|AAF16869.1|AF109693_1 (e_value=2e-48) allergen-like protein BRSn20 [Sambucus nigra];; (*SWP) sp|P33050|PSC13_MAIZE (e_value=3e-28) Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1;; (*TAIR) AT4G08685.1 (e_value=1e-40) | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159;; (*ITAG) Solyc04g054810.2.1 (e_value=8e-76) genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00051039g0001.1 protein AED:0.07 eAED:0.09 QI:868|1|0.5|1|0|0|2|0|184; (*GB) gi|225432792|ref|XP_002283454.1| (e_value=2e-67) PREDICTED: DPH4 homolog isoform 3 [Vitis vinifera];; (*SWP) sp|Q54CI5|DPH4_DICDI (e_value=1e-21) DPH4 homolog OS=Dictyostelium discoideum GN=dph4 PE=3 SV=1;; (*TAIR) AT4G10130.1 (e_value=5e-52) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr4:6320959-6321483 REVERSE LENGTH=174;; (*ITAG) Solyc12g088890.1.1 (e_value=1e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62529087-62533501 transcript_region:SL2.40ch12:62529087..62533501+ go_terms:GO:0031072 functional_description:"DnaJ chaperone (AHRD V1 *-*- C1EBL7_9CHLO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00002805g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|342; (*GB) gi|255571837|ref|XP_002526861.1| (e_value=7e-54) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G55820.1 (e_value=5e-36) | Symbols: | Fasciclin-like arabinogalactan family protein | chr3:20714041-20714655 FORWARD LENGTH=204;; (*ITAG) Solyc04g009610.2.1 (e_value=2e-35) genomic_reference:SL2.40ch04 gene_region:2996112-2997327 transcript_region:SL2.40ch04:2996112..2997327- functional_description:"Fasciclin-like domain-containing protein (Fragment) (AHRD V1 ***- B9HT02_POPTR)"; NbS00002805g0006.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|226; (*GB) gi|255571837|ref|XP_002526861.1| (e_value=4e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G55820.1 (e_value=1e-29) | Symbols: | Fasciclin-like arabinogalactan family protein | chr3:20714041-20714655 FORWARD LENGTH=204;; (*ITAG) Solyc04g009610.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:2996112-2997327 transcript_region:SL2.40ch04:2996112..2997327- functional_description:"Fasciclin-like domain-containing protein (Fragment) (AHRD V1 ***- B9HT02_POPTR)"; NbS00008057g0001.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|1|0|0|3|0|139; (*ITAG) Solyc03g095720.2.1 (e_value=3e-21) genomic_reference:SL2.40ch03 gene_region:50344450-50348825 transcript_region:SL2.40ch03:50344450..50348825- go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 **** B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515,GO:0016944 NbS00015991g0003.1 protein AED:0.07 eAED:0.07 QI:12|0.8|0.66|1|0.2|0.16|6|60|378; (*GB) gi|225443843|ref|XP_002267261.1| (e_value=6e-111) PREDICTED: GDSL esterase/lipase At1g28580 [Vitis vinifera];; (*SWP) sp|Q94F40|GDL9_ARATH (e_value=6e-104) GDSL esterase/lipase At1g28600 OS=Arabidopsis thaliana GN=At1g28600 PE=2 SV=1;; (*TAIR) AT1G28600.1 (e_value=5e-105) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10051228-10053073 REVERSE LENGTH=393;; (*ITAG) Solyc10g008720.2.1 (e_value=5e-159) genomic_reference:SL2.40ch10 gene_region:2792780-2796438 transcript_region:SL2.40ch10:2792780..2796438- go_terms:GO:0004064,GO:0050525 functional_description:"GDSL esterase/lipase At1g28580 (AHRD V1 ***- GDL7_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004064,GO:0050525 NbS00029746g0004.1 protein AED:0.05 eAED:0.05 QI:0|0.66|0|1|0.33|0.5|4|0|326; (*GB) gi|56694213|gb|AAW22875.1| (e_value=3e-129) bHLH transcriptional regulator [Solanum lycopersicum];; (*SWP) sp|Q0V7X4|FIT_ARATH (e_value=1e-68) Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1;; (*TAIR) AT2G28160.1 (e_value=1e-69) | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ATFIT1 | FER-like regulator of iron uptake | chr2:12004713-12005908 FORWARD LENGTH=318;; (*ITAG) Solyc06g051550.2.1 (e_value=5e-132) genomic_reference:SL2.40ch06 gene_region:31547113-31549026 transcript_region:SL2.40ch06:31547113..31549026- go_terms:GO:0003700,GO:0042802 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00026267g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.2|0.16|1|0.6|0.5|6|0|471; (*GB) gi|17402471|emb|CAD13178.1| (e_value=0.0) alpha-tubulin [Nicotiana tabacum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00061683g0006.1 protein AED:0.31 eAED:0.31 QI:0|0.75|0.69|1|0.58|0.61|13|0|527; (*GB) gi|255575318|ref|XP_002528562.1| (e_value=0.0) calmodulin binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FI00|MLO11_ARATH (e_value=0.0) MLO-like protein 11 OS=Arabidopsis thaliana GN=MLO11 PE=2 SV=1;; (*TAIR) AT5G53760.2 (e_value=0.0) | Symbols: MLO11, ATMLO11 | Seven transmembrane MLO family protein | chr5:21823055-21826289 FORWARD LENGTH=573;; (*ITAG) Solyc07g063260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62995345-63002900 transcript_region:SL2.40ch07:62995345..63002900- go_terms:GO:0016021 functional_description:"MLO-like protein 14 (AHRD V1 ***- B6SWK8_MAIZE); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00027973g0001.1 protein AED:0.14 eAED:0.14 QI:528|0.8|0.83|1|0|0|6|526|240; (*GB) gi|329739341|gb|AEB97383.1| (e_value=9e-145) MAX1 [Petunia x hybrida];; (*TAIR) AT2G26170.2 (e_value=1e-101) | Symbols: CYP711A1 | cytochrome P450, family 711, subfamily A, polypeptide 1 | chr2:11141703-11143270 FORWARD LENGTH=439;; (*ITAG) Solyc08g062950.2.1 (e_value=2e-146) genomic_reference:SL2.40ch08 gene_region:49585014-49587278 transcript_region:SL2.40ch08:49585014..49587278- go_terms:GO:0009055 functional_description:"Cytochrome P450"; GO:0009055 NbS00027973g0008.1 protein AED:0.12 eAED:0.16 QI:0|0.66|0.42|1|0.83|0.85|7|0|575; (*GB) gi|147866673|emb|CAN83680.1| (e_value=3e-139) hypothetical protein VITISV_003845 [Vitis vinifera];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=6e-20) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT2G26180.1 (e_value=5e-111) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416;; (*ITAG) Solyc08g062940.2.1 (e_value=1e-132) genomic_reference:SL2.40ch08 gene_region:49582645-49584764 transcript_region:SL2.40ch08:49582645..49584764+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00008879g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|224100023|ref|XP_002311714.1| (e_value=6e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944J0|SPCS1_ARATH (e_value=7e-16) Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1;; (*TAIR) AT2G22425.2 (e_value=5e-17) | Symbols: | Microsomal signal peptidase 12 kDa subunit (SPC12) | chr2:9515079-9515357 FORWARD LENGTH=92;; (*ITAG) Solyc03g005740.1.1 (e_value=2e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:519948-520190 transcript_region:SL2.40ch03:519948..520190- go_terms:GO:0043022 functional_description:"Signal peptidase complex subunit 1 (AHRD V1 ***- B6SJA3_MAIZE); contains Interpro domain(s) IPR009542 Microsomal signal peptidase 12 kDa subunit "; GO:0043022 NbS00008879g0002.1 protein AED:0.25 eAED:0.72 QI:0|0|0|1|1|1|2|0|66 NbS00022330g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|98; (*GB) gi|255565639|ref|XP_002523809.1| (e_value=9e-51) Ferredoxin-3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9ZQG8|FER3_ARATH (e_value=1e-49) Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1;; (*TAIR) AT2G27510.1 (e_value=8e-51) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc05g055280.1.1 (e_value=3e-58) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:64129316-64129612 transcript_region:SL2.40ch05:64129316..64129612- go_terms:GO:0005515 functional_description:"Ferredoxin-6 (AHRD V1 ***- B6T626_MAIZE); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0005515 NbS00022330g0005.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|242; (*GB) gi|25053813|gb|AAN71903.1| (e_value=6e-29) calcium/calmodulin protein kinase 1 [Nicotiana tabacum];; (*ITAG) Solyc05g055270.1.1 (e_value=1e-59) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:64127466-64128071 transcript_region:SL2.40ch05:64127466..64128071+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 ***- Q84ZT8_TOBAC)"; NbS00006626g0007.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|69 NbS00006626g0009.1 protein AED:0.10 eAED:0.10 QI:87|1|1|1|0|0.33|3|651|271; (*GB) gi|341833966|gb|AEK94318.1| (e_value=1e-82) disulfide isomerase-related protein [Pyrus x bretschneideri];; (*SWP) sp|Q93YX4|APRL5_ARATH (e_value=8e-59) 5'-adenylylsulfate reductase-like 5 OS=Arabidopsis thaliana GN=APRL5 PE=2 SV=1;; (*TAIR) AT3G03860.1 (e_value=6e-60) | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992465-994315 FORWARD LENGTH=300;; (*ITAG) Solyc01g005600.2.1 (e_value=1e-66) genomic_reference:SL2.40ch01 gene_region:420216-426321 transcript_region:SL2.40ch01:420216..426321- go_terms:GO:0045454 functional_description:"Adenosine 5&apos-phosphosulfate reductase 8 (AHRD V1 ***- Q5EUC2_MAIZE); contains Interpro domain(s) IPR017936 Thioredoxin-like "; GO:0045454 NbS00006626g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0|1|0.5|0.66|3|0|305; (*GB) gi|224145996|ref|XP_002325841.1| (e_value=1e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT5G18130.1 (e_value=8e-35) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5995634-5997165 FORWARD LENGTH=280;; (*ITAG) Solyc10g078590.1.1 (e_value=8e-76) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59689717-59691185 transcript_region:SL2.40ch10:59689717..59691185- functional_description:"Unknown Protein (AHRD V1)"; NbS00018382g0001.1 protein AED:0.04 eAED:0.55 QI:157|1|0.5|1|0|0|2|0|273; (*ITAG) Solyc08g080980.2.1 (e_value=5e-31) genomic_reference:SL2.40ch08 gene_region:61272581-61274489 transcript_region:SL2.40ch08:61272581..61274489- functional_description:"Unknown Protein (AHRD V1)"; NbS00011683g0216.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|1|1|2|0|392 NbS00011683g0201.1 protein AED:0.43 eAED:0.43 QI:744|1|0.5|1|0|0|2|0|68 NbS00009951g0006.1 protein AED:0.36 eAED:0.36 QI:242|1|0.5|1|0.33|0.25|4|0|207; (*GB) gi|255568693|ref|XP_002525318.1| (e_value=2e-143) phd finger transcription factor, putative [Ricinus communis];; (*TAIR) AT4G22140.2 (e_value=2e-129) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc07g049210.2.1 (e_value=4e-149) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00009951g0004.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.25|1|1|4|0|71 NbS00051103g0001.1 protein AED:0.36 eAED:0.36 QI:0|0.33|0.5|1|1|1|4|0|212; (*GB) gi|58198153|gb|AAW65807.1| (e_value=1e-122) stress regulated protein isoform 3 [Solanum virginianum];; (*TAIR) AT5G27290.1 (e_value=2e-96) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9618590-9620473 REVERSE LENGTH=341;; (*ITAG) Solyc02g090020.2.1 (e_value=2e-91) genomic_reference:SL2.40ch02 gene_region:46272375-46276064 transcript_region:SL2.40ch02:46272375..46276064+ functional_description:"Stress regulated protein isoform 2 (AHRD V1 **-- Q2KP23_9SOLN)"; NbS00051103g0005.1 protein AED:0.53 eAED:0.75 QI:0|0|0|0.66|0|0|3|0|110; (*GB) gi|58198153|gb|AAW65807.1| (e_value=2e-25) stress regulated protein isoform 3 [Solanum virginianum];; (*TAIR) AT5G27290.2 (e_value=4e-25) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 199 Blast hits to 194 proteins in 57 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr5:9618787-9620473 REVERSE LENGTH=262; NbS00021754g0001.1 protein AED:0.49 eAED:0.67 QI:0|0|0|0.66|1|1|3|0|67 NbS00010244g0014.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|515; (*GB) gi|225457638|ref|XP_002274930.1| (e_value=0.0) PREDICTED: probable inorganic phosphate transporter 1-9 [Vitis vinifera];; (*SWP) sp|Q9S735|PHT19_ARATH (e_value=0.0) Probable inorganic phosphate transporter 1-9 OS=Arabidopsis thaliana GN=PHT1-9 PE=2 SV=1;; (*TAIR) AT1G76430.1 (e_value=0.0) | Symbols: PHT1;9 | phosphate transporter 1;9 | chr1:28679115-28681874 REVERSE LENGTH=532;; (*ITAG) Solyc09g090080.1.1 (e_value=2e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64981619-64983223 transcript_region:SL2.40ch09:64981619..64983223+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00010244g0004.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|2|0|302; (*GB) gi|225457642|ref|XP_002273277.1| (e_value=1e-56) PREDICTED: uncharacterized protein LOC100246169 [Vitis vinifera];; (*TAIR) AT1G20870.1 (e_value=7e-49) | Symbols: | HSP20-like chaperones superfamily protein | chr1:7259287-7260775 REVERSE LENGTH=463;; (*ITAG) Solyc04g082740.2.1 (e_value=4e-105) genomic_reference:SL2.40ch04 gene_region:63900807-63902695 transcript_region:SL2.40ch04:63900807..63902695- functional_description:"Heat shock protein-like protein (AHRD V1 ***- Q84KA7_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00010244g0005.1 protein AED:0.27 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|255539314|ref|XP_002510722.1| (e_value=9e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54850.1 (e_value=1e-20) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20454440-20455994 FORWARD LENGTH=206;; (*ITAG) Solyc04g082720.2.1 (e_value=6e-16) genomic_reference:SL2.40ch04 gene_region:63893724-63895146 transcript_region:SL2.40ch04:63893724..63895146- functional_description:"Small heat shock protein (AHRD V1 ***- A2A1W7_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00010244g0006.1 protein AED:0.34 eAED:0.35 QI:0|1|0.5|1|1|1|2|0|154; (*GB) gi|122703610|dbj|BAF45120.1| (e_value=1e-100) small heat shock protein [Nicotiana tabacum];; (*TAIR) AT1G76440.3 (e_value=2e-42) | Symbols: | HSP20-like chaperones superfamily protein | chr1:28682371-28682999 REVERSE LENGTH=143;; (*ITAG) Solyc04g082720.2.1 (e_value=4e-85) genomic_reference:SL2.40ch04 gene_region:63893724-63895146 transcript_region:SL2.40ch04:63893724..63895146- functional_description:"Small heat shock protein (AHRD V1 ***- A2A1W7_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00028692g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|52547872|gb|AAU81956.1| (e_value=5e-48) ERF transcription factor 5 [Nicotiana tabacum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=4e-35) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=3e-36) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc04g014530.1.1 (e_value=1e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:4802150-4802851 transcript_region:SL2.40ch04:4802150..4802851+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017487g0001.1 protein AED:0.04 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|439487|dbj|BAA05076.1| (e_value=1e-41) zinc-finger DNA binding protein [Petunia x hybrida];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=4e-25) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT3G49930.1 (e_value=1e-27) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr3:18510246-18510893 FORWARD LENGTH=215;; (*ITAG) Solyc04g077980.1.1 (e_value=3e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60443326-60444108 transcript_region:SL2.40ch04:60443326..60444108+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00008060g0001.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|243; (*GB) gi|225458639|ref|XP_002282817.1| (e_value=7e-56) PREDICTED: transcription factor HEC1 [Vitis vinifera];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=2e-40) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=2e-41) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc04g078790.2.1 (e_value=1e-67) genomic_reference:SL2.40ch04 gene_region:61052134-61053446 transcript_region:SL2.40ch04:61052134..61053446+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00008060g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|89; (*GB) gi|316996014|dbj|BAD83474.2| (e_value=3e-24) ribosomal protein S3 [Nicotiana tabacum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=2e-25) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=1e-19) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc09g015850.2.1 (e_value=2e-26) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00007431g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|245 NbS00046312g0002.1 protein AED:0.19 eAED:0.28 QI:0|0|0|1|1|1|2|0|100; (*ITAG) Solyc06g082770.2.1 (e_value=2e-30) genomic_reference:SL2.40ch06 gene_region:44749200-44750786 transcript_region:SL2.40ch06:44749200..44750786+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00046312g0003.1 protein AED:0.07 eAED:0.07 QI:347|0|0.5|1|0|1|2|723|102; (*GB) gi|225434285|ref|XP_002263126.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100255381 [Vitis vinifera];; (*TAIR) AT1G09575.1 (e_value=1e-17) | Symbols: | Protein of unknown function (DUF607) | chr1:3101851-3102832 REVERSE LENGTH=292;; (*ITAG) Solyc06g082780.2.1 (e_value=2e-38) genomic_reference:SL2.40ch06 gene_region:44751145-44754834 transcript_region:SL2.40ch06:44751145..44754834- functional_description:"Coiled-coil domain containing 109B (AHRD V1 *--- Q3ZBZ7_BOVIN); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00046312g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|1|1|2|0|100; (*ITAG) Solyc06g082770.2.1 (e_value=2e-30) genomic_reference:SL2.40ch06 gene_region:44749200-44750786 transcript_region:SL2.40ch06:44749200..44750786+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7LG10_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00005708g0014.1 protein AED:0.25 eAED:0.28 QI:612|0.5|0.36|1|0.61|0.63|19|0|1208; (*GB) gi|242053943|ref|XP_002456117.1| (e_value=0.0) hypothetical protein SORBIDRAFT_03g030785 [Sorghum bicolor];; (*TAIR) AT5G44180.2 (e_value=7e-147) | Symbols: | Homeodomain-like transcriptional regulator | chr5:17783172-17789872 FORWARD LENGTH=1507;; (*ITAG) Solyc07g053610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59356951-59373279 transcript_region:SL2.40ch07:59356951..59373279+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *--- D6BV21_ORYSJ); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0006355,GO:0045449 NbS00005708g0001.1 protein AED:0.64 eAED:0.73 QI:0|0|0|0.75|1|1|4|0|199; (*GB) gi|224132876|ref|XP_002327902.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G44180.1 (e_value=2e-26) | Symbols: | Homeodomain-like transcriptional regulator | chr5:17783172-17789872 FORWARD LENGTH=1694;; (*ITAG) Solyc07g053610.2.1 (e_value=2e-39) genomic_reference:SL2.40ch07 gene_region:59356951-59373279 transcript_region:SL2.40ch07:59356951..59373279+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *--- D6BV21_ORYSJ); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0006355,GO:0045449 NbS00005708g0012.1 protein AED:0.24 eAED:0.24 QI:277|1|1|1|1|1|3|348|341; (*GB) gi|332693248|gb|AEE92843.1| (e_value=0.0) Potato virus X SL1 RNA interacting protein 2 [Nicotiana benthamiana];; (*SWP) sp|P59910|DJB13_HUMAN (e_value=2e-53) DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1;; (*TAIR) AT2G20560.1 (e_value=5e-138) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc09g005350.2.1 (e_value=1e-134) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00005929g0003.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.2|0.6|0.75|0.8|5|0|178; (*GB) gi|388499480|gb|AFK37806.1| (e_value=3e-112) unknown [Lotus japonicus];; (*SWP) sp|Q8LGF7|PEX4_ARATH (e_value=4e-110) Protein PEROXIN-4 OS=Arabidopsis thaliana GN=PEX4 PE=1 SV=1;; (*TAIR) AT5G25760.2 (e_value=3e-111) | Symbols: PEX4 | peroxin4 | chr5:8967983-8969173 FORWARD LENGTH=157;; (*ITAG) Solyc11g071260.1.1 (e_value=6e-117) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51878146-51882669 transcript_region:SL2.40ch11:51878146..51882669- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 (AHRD V1 ***- B6K7Y4_SCHJY); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00035094g0001.1 protein AED:0.21 eAED:0.25 QI:211|1|0.5|1|0|0.5|2|0|592; (*GB) gi|225445124|ref|XP_002283858.1| (e_value=0.0) PREDICTED: SNW domain-containing protein 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q13573|SNW1_HUMAN (e_value=2e-131) SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1;; (*TAIR) AT1G77180.2 (e_value=0.0) | Symbols: SKIP | chromatin protein family | chr1:28999791-29001632 REVERSE LENGTH=613;; (*ITAG) Solyc12g008370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1799025-1802970 transcript_region:SL2.40ch12:1799025..1802970+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing protein 45 (AHRD V1 **-- D6RKF6_COPC7); contains Interpro domain(s) IPR017862 SKI-interacting protein, SKIP "; GO:0005681 NbS00054523g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|199; (*GB) gi|87241257|gb|ABD33115.1| (e_value=2e-90) SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula];; (*SWP) sp|Q9Y5N5|HEMK2_HUMAN (e_value=5e-37) HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=3;; (*TAIR) AT3G13440.1 (e_value=8e-88) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:4378338-4379347 FORWARD LENGTH=278;; (*ITAG) Solyc12g100070.1.1 (e_value=3e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65290244-65290834 transcript_region:SL2.40ch12:65290244..65290834- go_terms:GO:0032259,GO:0008168 functional_description:"Methyltransferase (AHRD V1 ***- A6ZYA0_YEAS7); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0032259,GO:0008168 NbS00035611g0003.1 protein AED:0.47 eAED:0.72 QI:1|0|0|1|1|0.5|2|0|75 NbS00052527g0004.1 protein AED:0.04 eAED:0.04 QI:217|1|0.83|1|0.8|0.66|6|0|247; (*GB) gi|193290676|gb|ACF17646.1| (e_value=4e-179) putative caffeoyl-CoA 3-O-methyltransferase [Capsicum annuum];; (*SWP) sp|Q42945|CAMT6_TOBAC (e_value=4e-180) Caffeoyl-CoA O-methyltransferase 6 OS=Nicotiana tabacum GN=CCOAOMT6 PE=2 SV=1;; (*TAIR) AT4G34050.1 (e_value=9e-164) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc01g107910.2.1 (e_value=9e-177) genomic_reference:SL2.40ch01 gene_region:87057221-87058641 transcript_region:SL2.40ch01:87057221..87058641- go_terms:GO:0042409 functional_description:"Caffeoyl CoA 3-O-methyltransferase (AHRD V1 **** Q5I2D1_9ROSI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00001000g0011.1 protein AED:0.15 eAED:0.15 QI:172|0.72|0.84|1|0.72|0.80|26|765|1231; (*GB) gi|296083158|emb|CBI22794.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q92797|SYMPK_HUMAN (e_value=3e-62) Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2;; (*TAIR) AT5G01400.1 (e_value=0.0) | Symbols: ESP4 | HEAT repeat-containing protein | chr5:162803-171072 REVERSE LENGTH=1467;; (*ITAG) Solyc09g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:253408-264455 transcript_region:SL2.40ch09:253408..264455+ go_terms:GO:0005488 functional_description:"Symplekin (AHRD V1 *-*- Q17I55_AEDAE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00001000g0012.1 protein AED:0.32 eAED:0.32 QI:88|1|0.66|1|1|0.66|3|0|343; (*GB) gi|358349085|ref|XP_003638570.1| (e_value=0.0) Chaperone protein dnaJ [Medicago truncatula];; (*SWP) sp|Q80Y75|DJB13_MOUSE (e_value=2e-81) DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1;; (*TAIR) AT3G08910.1 (e_value=1e-168) | Symbols: | DNAJ heat shock family protein | chr3:2710402-2711811 REVERSE LENGTH=323;; (*ITAG) Solyc09g005350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00001000g0111.1 protein AED:0.38 eAED:0.40 QI:0|0|0.5|1|0|0.5|2|219|94 NbS00001000g0109.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|171 NbC23609153g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|60; (*ITAG) Solyc07g041690.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51309230-51314150 transcript_region:SL2.40ch07:51309230..51314150+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC25839966g0004.1 protein AED:0.41 eAED:0.41 QI:0|0.33|0|0.5|0.33|0.5|4|0|243; (*GB) gi|147856665|emb|CAN80313.1| (e_value=2e-11) hypothetical protein VITISV_020758 [Vitis vinifera];; (*ITAG) Solyc08g067090.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:53210448-53219760 transcript_region:SL2.40ch08:53210448..53219760+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B9H8E5_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00033571g0003.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|400; (*GB) gi|147768788|emb|CAN73636.1| (e_value=6e-90) hypothetical protein VITISV_009603 [Vitis vinifera];; (*SWP) sp|Q8LMR9|Y3209_ORYSJ (e_value=7e-71) B3 domain-containing protein Os03g0120900 OS=Oryza sativa subsp. japonica GN=Os03g0120900 PE=2 SV=1;; (*TAIR) AT2G46870.1 (e_value=8e-70) | Symbols: NGA1 | AP2/B3-like transcriptional factor family protein | chr2:19261313-19262245 FORWARD LENGTH=310;; (*ITAG) Solyc08g083400.2.1 (e_value=3e-119) genomic_reference:SL2.40ch08 gene_region:63026330-63027661 transcript_region:SL2.40ch08:63026330..63027661+ go_terms:GO:0006355 functional_description:"Auxin response factor 24 (AHRD V1 *-*- D9HNV1_MAIZE); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00028770g0010.1 protein AED:0.00 eAED:0.01 QI:0|1|1|1|1|1|3|0|447; (*GB) gi|225447555|ref|XP_002269014.1| (e_value=6e-176) PREDICTED: transcriptional regulator STERILE APETALA [Vitis vinifera];; (*SWP) sp|Q9FKH1|SAP_ARATH (e_value=2e-157) Transcriptional regulator STERILE APETALA OS=Arabidopsis thaliana GN=SAP PE=1 SV=1;; (*TAIR) AT5G35770.1 (e_value=2e-158) | Symbols: SAP | Transducin/WD40 repeat-like superfamily protein | chr5:13936457-13940786 REVERSE LENGTH=446;; (*ITAG) Solyc05g041220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:49689825-49694366 transcript_region:SL2.40ch05:49689825..49694366+ go_terms:GO:0003700 functional_description:"Transcriptional regulator STERILE APETALA (AHRD V1 ***- SAP_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0003700 NbS00028770g0011.1 protein AED:0.25 eAED:0.72 QI:56|0|0|1|0|0|2|0|64 NbS00001297g0101.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|100 NbS00011266g0003.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|392; (*GB) gi|359483416|ref|XP_002266376.2| (e_value=8e-159) PREDICTED: probable F-box protein At4g22030 [Vitis vinifera];; (*SWP) sp|O65451|FB333_ARATH (e_value=6e-102) Probable F-box protein At4g22030 OS=Arabidopsis thaliana GN=At4g22030 PE=2 SV=1;; (*TAIR) AT4G04480.1 (e_value=8e-107) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:2229649-2230845 FORWARD LENGTH=398;; (*ITAG) Solyc02g080850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39542836-39544104 transcript_region:SL2.40ch02:39542836..39544104+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00059339g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|0.8|0.83|6|0|426; (*GB) gi|255540259|ref|XP_002511194.1| (e_value=0.0) AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q8LBB2|KING1_ARATH (e_value=0.0) SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2;; (*TAIR) AT3G48530.1 (e_value=0.0) | Symbols: KING1 | SNF1-related protein kinase regulatory subunit gamma 1 | chr3:17987559-17989592 FORWARD LENGTH=424;; (*ITAG) Solyc03g111310.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55978825-55983439 transcript_region:SL2.40ch03:55978825..55983439+ functional_description:"AKIN gamma (AHRD V1 **-- Q7XYY0_MEDTR); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00040272g0002.1 protein AED:0.20 eAED:0.27 QI:0|0|0.14|1|1|1|7|0|227; (*GB) gi|255536941|ref|XP_002509537.1| (e_value=8e-85) Triacylglycerol lipase 2 precursor, putative [Ricinus communis];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=2e-67) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=1e-68) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc02g094040.2.1 (e_value=5e-107) genomic_reference:SL2.40ch02 gene_region:49264758-49267969 transcript_region:SL2.40ch02:49264758..49267969+ go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00052796g0001.1 protein AED:0.33 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|118; (*ITAG) Solyc04g007030.2.1 (e_value=6e-25) genomic_reference:SL2.40ch04 gene_region:742844-747712 transcript_region:SL2.40ch04:742844..747712- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00052796g0002.1 protein AED:0.38 eAED:0.76 QI:44|0|0|1|0|0|2|0|97 NbS00002598g0011.1 protein AED:0.12 eAED:0.12 QI:13|0|0|0.5|1|0.5|2|0|79; (*GB) gi|255548249|ref|XP_002515181.1| (e_value=4e-30) protein transport protein sec23, putative [Ricinus communis];; (*TAIR) AT4G01810.1 (e_value=1e-26) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc09g055810.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:40994970-40995209 transcript_region:SL2.40ch09:40994970..40995209- functional_description:"Unknown Protein (AHRD V1)"; NbS00002598g0016.1 protein AED:0.16 eAED:0.16 QI:0|1|0.95|1|0.95|0.95|23|321|841; (*GB) gi|225453336|ref|XP_002270305.1| (e_value=0.0) PREDICTED: glutaminyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|P52780|SYQ_LUPLU (e_value=0.0) Glutamine--tRNA ligase OS=Lupinus luteus PE=2 SV=2;; (*TAIR) AT1G25350.1 (e_value=0.0) | Symbols: OVA9 | glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative | chr1:8889280-8894205 REVERSE LENGTH=795;; (*ITAG) Solyc05g009220.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3360296-3369634 transcript_region:SL2.40ch05:3360296..3369634+ go_terms:GO:0032183,GO:0042802 functional_description:"Glutaminyl-tRNA synthetase (AHRD V1 ***- B6UC34_MAIZE); contains Interpro domain(s) IPR004514 Glutaminyl-tRNA synthetase, class Ic "; GO:0032183,GO:0042802 NbS00002598g0015.1 protein AED:0.06 eAED:0.06 QI:59|1|1|1|1|1|3|248|271; (*GB) gi|224099383|ref|XP_002311464.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=3e-61) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT1G68320.1 (e_value=2e-91) | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286;; (*ITAG) Solyc05g009230.1.1 (e_value=3e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:3372023-3373258 transcript_region:SL2.40ch05:3372023..3373258- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9C9G7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00016690g0011.1 protein AED:0.27 eAED:0.27 QI:313|1|1|1|1|1|4|202|372; (*GB) gi|255573107|ref|XP_002527483.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|O81760|P2C63_ARATH (e_value=0.0) Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1;; (*TAIR) AT4G33920.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:16260876-16262703 FORWARD LENGTH=380;; (*ITAG) Solyc10g049630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41774876-41777511 transcript_region:SL2.40ch10:41774876..41777511- go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00058310g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|350538997|ref|NP_001234113.1| (e_value=5e-36) uncharacterized protein LOC778318 precursor [Solanum lycopersicum];; (*ITAG) Solyc08g008290.2.1 (e_value=1e-38) genomic_reference:SL2.40ch08 gene_region:2717877-2720127 transcript_region:SL2.40ch08:2717877..2720127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019289g0006.1 protein AED:0.03 eAED:0.03 QI:199|0.92|0.92|1|0.69|0.64|14|2479|381; (*GB) gi|224143559|ref|XP_002324997.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P28734|AATC_DAUCA (e_value=0.0) Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G11520.1 (e_value=0.0) | Symbols: ASP3, YLS4 | aspartate aminotransferase 3 | chr5:3685257-3687721 REVERSE LENGTH=449;; (*ITAG) Solyc08g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54637277-54645402 transcript_region:SL2.40ch08:54637277..54645402- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** B9H920_POPTR); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00019289g0002.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.3|0.8|1|1|10|0|601; (*GB) gi|255549950|ref|XP_002516026.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=6e-113) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT4G13240.1 (e_value=3e-163) | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide exchange factor 9 | chr4:7680153-7682414 FORWARD LENGTH=517;; (*ITAG) Solyc07g032730.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:40595047-40596909 transcript_region:SL2.40ch07:40595047..40596909+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00054840g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|493; (*GB) gi|255557032|ref|XP_002519549.1| (e_value=6e-137) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q700D2|JKD_ARATH (e_value=2e-100) Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1;; (*TAIR) AT5G03150.1 (e_value=1e-101) | Symbols: JKD | C2H2-like zinc finger protein | chr5:745849-748678 FORWARD LENGTH=503;; (*ITAG) Solyc10g084180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63159261-63161247 transcript_region:SL2.40ch10:63159261..63161247- go_terms:GO:0005515,GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU4_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00017553g0005.1 protein AED:0.27 eAED:0.28 QI:129|0.86|0.81|1|0.93|0.93|16|0|715; (*GB) gi|297738991|emb|CBI28236.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TC07|TBC15_HUMAN (e_value=3e-79) TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2;; (*TAIR) AT5G52580.1 (e_value=0.0) | Symbols: | RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=673;; (*ITAG) Solyc07g008000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2697439-2709902 transcript_region:SL2.40ch07:2697439..2709902+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00017553g0008.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|214; (*GB) gi|9954118|gb|AAG08962.1|AF122054_1 (e_value=1e-141) tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum];; (*SWP) sp|Q9LTF7|MYB82_ARATH (e_value=3e-60) Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1;; (*TAIR) AT5G52600.1 (e_value=2e-61) | Symbols: AtMYB82, MYB82 | myb domain protein 82 | chr5:21343197-21343968 REVERSE LENGTH=201;; (*ITAG) Solyc07g008010.2.1 (e_value=2e-135) genomic_reference:SL2.40ch07 gene_region:2710099-2711454 transcript_region:SL2.40ch07:2710099..2711454- go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 *--* Q6Q789_VITVI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00017553g0203.1 protein AED:0.19 eAED:0.19 QI:193|1|1|1|1|1|4|259|210 NbS00006848g0006.1 protein AED:0.49 eAED:0.49 QI:350|0|0.5|0.5|0|0|2|0|67 NbS00006848g0002.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|1|1|1|4|0|464; (*GB) gi|225434678|ref|XP_002280416.1| (e_value=0.0) PREDICTED: laccase-4 [Vitis vinifera];; (*SWP) sp|Q0IQU1|LAC22_ORYSJ (e_value=0.0) Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc06g076760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44056679-44059629 transcript_region:SL2.40ch06:44056679..44059629+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00018364g0008.1 protein AED:0.24 eAED:0.25 QI:38|0.83|0.71|1|0.66|0.42|7|0|227; (*GB) gi|225464820|ref|XP_002270105.1| (e_value=2e-80) PREDICTED: probable receptor-like protein kinase At1g49730 [Vitis vinifera];; (*SWP) sp|Q9FX99|Y1497_ARATH (e_value=2e-30) Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana GN=At1g49730 PE=1 SV=1;; (*TAIR) AT5G22050.2 (e_value=8e-58) | Symbols: | Protein kinase superfamily protein | chr5:7301467-7303209 FORWARD LENGTH=307;; (*ITAG) Solyc11g071820.1.1 (e_value=1e-122) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52259863-52264687 transcript_region:SL2.40ch11:52259863..52264687+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM68_9VIRI); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468 NbS00018364g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.6|1|1|1|5|0|318; (*GB) gi|10798648|emb|CAC12824.1| (e_value=2e-110) putative DNAJ protein [Nicotiana tabacum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=7e-102) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT3G44110.1 (e_value=6e-95) | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15869115-15871059 REVERSE LENGTH=420;; (*ITAG) Solyc11g071830.1.1 (e_value=8e-111) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52265280-52268287 transcript_region:SL2.40ch11:52265280..52268287- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaj (AHRD V1 ***- Q17AX7_AEDAE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00040588g0001.1 protein AED:0.01 eAED:0.01 QI:195|1|1|1|0.85|0.75|8|446|382; (*GB) gi|296086430|emb|CBI32019.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07040.1 (e_value=3e-160) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | chr1:2161225-2163035 REVERSE LENGTH=371;; (*ITAG) Solyc05g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1644471-1649129 transcript_region:SL2.40ch05:1644471..1649129- functional_description:"Bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (AHRD V1 **-- A8T8Q5_9VIBR)"; NbS00040588g0002.1 protein AED:0.29 eAED:0.29 QI:567|1|0.83|1|1|1|6|0|482; (*GB) gi|53689728|gb|AAU89742.1| (e_value=0.0) serine/threonine protein kinase-like [Solanum tuberosum];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013610g0010.1 protein AED:0.13 eAED:0.14 QI:0|0.66|0.25|1|0.66|0.5|4|0|276; (*GB) gi|356530687|ref|XP_003533912.1| (e_value=8e-77) PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max];; (*SWP) sp|P46665|HAT14_ARATH (e_value=8e-62) Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3;; (*TAIR) AT5G06710.1 (e_value=6e-63) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336;; (*ITAG) Solyc10g080540.1.1 (e_value=5e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61109021-61111955 transcript_region:SL2.40ch10:61109021..61111955+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 ***- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00013610g0007.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|436|404; (*GB) gi|255579021|ref|XP_002530362.1| (e_value=4e-152) Hsp90 co-chaperone AHA1, putative [Ricinus communis];; (*SWP) sp|Q55DB6|AHSA_DICDI (e_value=3e-41) Activator of 90 kDa heat shock protein ATPase homolog OS=Dictyostelium discoideum GN=ahsa PE=2 SV=1;; (*TAIR) AT3G12050.1 (e_value=7e-143) | Symbols: | Aha1 domain-containing protein | chr3:3839289-3841303 FORWARD LENGTH=360;; (*ITAG) Solyc10g078930.1.1 (e_value=6e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59896781-59900058 transcript_region:SL2.40ch10:59896781..59900058- go_terms:GO:0051087,GO:0001671 functional_description:"Activator of heat shock protein ATPase homolog 1 (AHRD V1 **-* D3PJW3_9MAXI); contains Interpro domain(s) IPR015310 Activator of Hsp90 ATPase, N-terminal "; GO:0051087,GO:0001671 NbS00039844g0002.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|1|1|2|0|180; (*GB) gi|350538151|ref|NP_001234841.1| (e_value=2e-42) ethylene-responsive factor 1 [Solanum lycopersicum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=1e-38) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=8e-40) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc05g051180.1.1 (e_value=7e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60577494-60578126 transcript_region:SL2.40ch05:60577494..60578126+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 *-*- B6U860_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00003411g0017.1 protein AED:0.03 eAED:0.03 QI:886|1|1|1|1|1|2|1814|85 NbS00003411g0018.1 protein AED:0.25 eAED:0.25 QI:403|0.9|0.90|1|0.9|0.81|11|0|591; (*GB) gi|309754761|gb|ADO86983.1| (e_value=0.0) SERK3B [Nicotiana benthamiana];; (*SWP) sp|Q94F62|BAK1_ARATH (e_value=0.0) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2;; (*TAIR) AT4G33430.1 (e_value=0.0) | Symbols: BAK1, RKS10, SERK3, ELG, ATSERK3, ATBAK1 | BRI1-associated receptor kinase | chr4:16086654-16090288 REVERSE LENGTH=615;; (*ITAG) Solyc10g047140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35371188-35382060 transcript_region:SL2.40ch10:35371188..35382060- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00003411g0016.1 protein AED:0.53 eAED:0.85 QI:39|0|0|0.66|0.5|0.66|3|0|43 NbS00003411g0019.1 protein AED:0.05 eAED:0.05 QI:105|0.83|0.71|1|1|1|7|212|769; (*GB) gi|350534908|ref|NP_001233910.1| (e_value=0.0) beta-D-xylosidase 1 precursor [Solanum lycopersicum];; (*SWP) sp|A5JTQ3|XYL2_MEDSV (e_value=0.0) Beta-xylosidase/alpha-L-arabinofuranosidase 2 OS=Medicago sativa subsp. varia GN=Xyl2 PE=2 SV=1;; (*TAIR) AT5G64570.1 (e_value=0.0) | Symbols: XYL4, ATBXL4 | beta-D-xylosidase 4 | chr5:25810227-25813309 REVERSE LENGTH=784;; (*ITAG) Solyc10g047030.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34703285-34707424 transcript_region:SL2.40ch10:34703285..34707424+ go_terms:GO:0009044,GO:0005515 functional_description:"Beta-xylosidase 4 (AHRD V1 **** D7MRV5_ARALY); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0005515 NbS00038288g0001.1 protein AED:0.29 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|180; (*ITAG) Solyc09g010730.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4037751-4038446 transcript_region:SL2.40ch09:4037751..4038446- functional_description:"Unknown Protein (AHRD V1)"; NbS00021157g0006.1 protein AED:0.14 eAED:0.14 QI:0|0.94|0.88|1|1|0.94|18|229|877; (*GB) gi|224087947|ref|XP_002308268.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=0.0) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=0.0) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00024272g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|876|185; (*GB) gi|225428853|ref|XP_002285101.1| (e_value=1e-89) PREDICTED: 40S ribosomal protein S16 [Vitis vinifera];; (*SWP) sp|P46293|RS16_GOSHI (e_value=3e-86) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=6e-86) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc04g026100.1.1 (e_value=5e-93) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:24590324-24590767 transcript_region:SL2.40ch04:24590324..24590767+ go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00024272g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|16566316|gb|AAL26478.1|AF407278_1 (e_value=6e-26) RALF precursor [Nicotiana tabacum];; (*TAIR) AT3G16570.1 (e_value=5e-25) | Symbols: RALF23, ATRALF23 | rapid alkalinization factor 23 | chr3:5644748-5645164 FORWARD LENGTH=138;; (*ITAG) Solyc01g099520.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:81501401-81502283 transcript_region:SL2.40ch01:81501401..81502283- go_terms:GO:0004871 functional_description:"Rapid alkalinization factor 2 (AHRD V1 **-- Q6TF28_SOLCH); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; GO:0004871 NbS00028302g0001.1 protein AED:0.02 eAED:0.02 QI:90|1|1|1|0.5|0.33|3|355|125; (*GB) gi|225431737|ref|XP_002268941.1| (e_value=1e-53) PREDICTED: 60S ribosomal protein L22-2 [Vitis vinifera];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=3e-52) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=2e-53) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc01g099830.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:81721206-81723201 transcript_region:SL2.40ch01:81721206..81723201+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00024166g0003.1 protein AED:0.20 eAED:0.21 QI:0|0|0.33|1|1|1|3|0|302; (*GB) gi|116321|sp|P24091.1|CHI2_TOBAC (e_value=2e-179) RecName: Full=Endochitinase B; Short=CHN-B; Flags: Precursor;; (*SWP) sp|P24091|CHI2_TOBAC (e_value=0.0) Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1;; (*TAIR) AT3G12500.1 (e_value=1e-132) | Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB | basic chitinase | chr3:3962501-3963984 REVERSE LENGTH=335;; (*ITAG) Solyc10g055810.1.1 (e_value=3e-168) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52891942-52893092 transcript_region:SL2.40ch10:52891942..52893092- go_terms:GO:0008843 functional_description:"Endochitinase (Chitinase) (AHRD V1 **** Q43184_SOLTU); contains Interpro domain(s) IPR016283 Glycoside hydrolase, family 19 IPR018371 Chitin-binding, type 1, conserved site IPR000726 Glycoside hydrolase, family 19, catalytic IPR001002 Chitin-binding, type 1 "; GO:0008843 NbS00009277g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|225424323|ref|XP_002284784.1| (e_value=3e-71) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=1e-34) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G01610.1 (e_value=6e-57) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr2:274124-274792 REVERSE LENGTH=222;; (*ITAG) Solyc10g076730.1.1 (e_value=6e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00009277g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.4|1|0.25|0.4|5|0|374; (*GB) gi|225443843|ref|XP_002267261.1| (e_value=1e-85) PREDICTED: GDSL esterase/lipase At1g28580 [Vitis vinifera];; (*SWP) sp|Q9FXJ2|GDL7_ARATH (e_value=2e-85) GDSL esterase/lipase At1g28580 OS=Arabidopsis thaliana GN=At1g28580 PE=2 SV=1;; (*TAIR) AT1G28580.1 (e_value=2e-86) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10044603-10046379 REVERSE LENGTH=390;; (*ITAG) Solyc10g008710.2.1 (e_value=1e-160) genomic_reference:SL2.40ch10 gene_region:2775631-2779084 transcript_region:SL2.40ch10:2775631..2779084- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28610 (AHRD V1 **** GDL10_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00000532g0011.1 protein AED:0.41 eAED:0.41 QI:0|1|0|1|0|0|2|0|212; (*GB) gi|225426168|ref|XP_002278930.1| (e_value=2e-101) PREDICTED: probable polygalacturonase [Vitis vinifera];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=1e-95) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23500.1 (e_value=8e-96) | Symbols: | Pectin lyase-like superfamily protein | chr4:12264640-12267074 FORWARD LENGTH=495;; (*ITAG) Solyc08g081480.2.1 (e_value=2e-121) genomic_reference:SL2.40ch08 gene_region:61693642-61697010 transcript_region:SL2.40ch08:61693642..61697010+ go_terms:GO:0005975 functional_description:"Polygalacturonase-like protein (AHRD V1 **-- Q84LI7_FRAAN); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00000532g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|1|3|0|344; (*GB) gi|350537575|ref|NP_001234555.1| (e_value=5e-147) transcription factor [Solanum lycopersicum];; (*SWP) sp|Q8LPH6|MYB86_ARATH (e_value=2e-62) Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1;; (*TAIR) AT1G63910.1 (e_value=7e-85) | Symbols: AtMYB103, MYB103 | myb domain protein 103 | chr1:23719968-23721625 REVERSE LENGTH=370;; (*ITAG) Solyc08g081500.1.1 (e_value=1e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61702255-61705091 transcript_region:SL2.40ch08:61702255..61705091- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q9SRB0_ARATH); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00000532g0008.1 protein AED:0.18 eAED:0.20 QI:0|0.33|0.42|1|0.5|0.14|7|507|340; (*GB) gi|350539501|ref|NP_001233897.1| (e_value=2e-169) mitogen-activated protein kinase 7 [Solanum lycopersicum];; (*SWP) sp|Q39024|MPK4_ARATH (e_value=2e-157) Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2;; (*TAIR) AT4G01370.1 (e_value=2e-158) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc08g081490.2.1 (e_value=3e-172) genomic_reference:SL2.40ch08 gene_region:61696989-61700296 transcript_region:SL2.40ch08:61696989..61700296- go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase (AHRD V1 **** Q8LT16_SOLTU); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00019418g0011.1 protein AED:0.01 eAED:0.01 QI:218|1|1|1|1|1|2|281|99; (*GB) gi|224065138|ref|XP_002301686.1| (e_value=4e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHQ3|HS157_ARATH (e_value=3e-20) 15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=2 SV=1;; (*TAIR) AT5G37670.1 (e_value=2e-21) | Symbols: | HSP20-like chaperones superfamily protein | chr5:14969035-14969448 FORWARD LENGTH=137;; (*ITAG) Solyc04g014480.2.1 (e_value=1e-46) genomic_reference:SL2.40ch04 gene_region:4722700-4724263 transcript_region:SL2.40ch04:4722700..4724263+ go_terms:GO:0051082,GO:0042802 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TQD6_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082,GO:0042802 NbS00019418g0013.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0|0|3|0|270; (*GB) gi|157679144|dbj|BAF80451.1| (e_value=2e-84) MYB-related transcription factor [Nicotiana tabacum];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=2e-65) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT5G16600.1 (e_value=2e-70) | Symbols: MYB43, AtMYB43 | myb domain protein 43 | chr5:5438291-5440214 FORWARD LENGTH=327;; (*ITAG) Solyc04g014470.2.1 (e_value=1e-88) genomic_reference:SL2.40ch04 gene_region:4708995-4711600 transcript_region:SL2.40ch04:4708995..4711600- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SPG7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00019418g0001.1 protein AED:0.37 eAED:0.37 QI:380|0.66|0.5|1|0.66|0.5|4|0|154; (*ITAG) Solyc02g005360.1.1 (e_value=6e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00011833g0011.1 protein AED:0.60 eAED:0.60 QI:152|0.5|0.33|0.66|0|0.33|3|0|137; (*ITAG) Solyc03g033630.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:9500784-9507186 transcript_region:SL2.40ch03:9500784..9507186+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 *--- C3H44_ARATH); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00011833g0010.1 protein AED:0.24 eAED:0.24 QI:0|0.93|0.87|1|0.93|0.93|16|429|568; (*GB) gi|544184|sp|Q06801.1|DPEP_SOLTU (e_value=0.0) RecName: Full=4-alpha-glucanotransferase, chloroplastic/amyloplastic; AltName: Full=Amylomaltase; AltName: Full=Disproportionating enzyme; Short=D-enzyme; Flags: Precursor;; (*SWP) sp|Q06801|DPEP_SOLTU (e_value=0.0) 4-alpha-glucanotransferase, chloroplastic/amyloplastic OS=Solanum tuberosum GN=DPEP PE=1 SV=1;; (*TAIR) AT5G64860.1 (e_value=0.0) | Symbols: DPE1 | disproportionating enzyme | chr5:25925373-25928788 REVERSE LENGTH=576;; (*ITAG) Solyc04g053120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50864174-50870628 transcript_region:SL2.40ch04:50864174..50870628- go_terms:GO:0005975 functional_description:"4-alpha-glucanotransferase (AHRD V1 ***- Q9LV91_ARATH); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0005975 NbS00011833g0106.1 protein AED:0.01 eAED:0.01 QI:135|1|1|1|1|1|2|447|194 NbS00011833g0210.1 protein AED:0.11 eAED:0.11 QI:252|1|1|1|1|1|2|259|140 NbS00011833g0216.1 protein AED:0.23 eAED:0.27 QI:0|0.66|0.25|1|0.33|0.5|4|0|103 NbS00011833g0215.1 protein AED:0.62 eAED:0.68 QI:19|0|0.12|0.75|0.14|0.25|8|0|216 NbS00011833g0217.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.5|1|0.5|2|0|69 NbS00011833g0214.1 protein AED:0.28 eAED:0.31 QI:0|0|0|1|0|0|3|0|812 NbS00015500g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc10g079810.1.1 (e_value=7e-21) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:60631689-60631931 transcript_region:SL2.40ch10:60631689..60631931+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035840g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|359482912|ref|XP_003632859.1| (e_value=2e-73) PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera];; (*TAIR) AT3G27750.1 (e_value=1e-53) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10284820-10285488 FORWARD LENGTH=222;; (*ITAG) Solyc03g120510.1.1 (e_value=6e-128) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:62942987-62943673 transcript_region:SL2.40ch03:62942987..62943673- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY)"; NbS00013404g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.6|0.5|1|0.2|0.16|6|0|213; (*GB) gi|147866662|emb|CAN79421.1| (e_value=2e-81) hypothetical protein VITISV_017373 [Vitis vinifera];; (*SWP) sp|Q8VYP9|ICML1_ARATH (e_value=3e-46) Probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 OS=Arabidopsis thaliana GN=ICMEL1 PE=2 SV=1;; (*TAIR) AT1G26120.1 (e_value=2e-47) | Symbols: ICME-LIKE1 | alpha/beta-Hydrolases superfamily protein | chr1:9028656-9031402 REVERSE LENGTH=476;; (*ITAG) Solyc05g010050.2.1 (e_value=3e-66) genomic_reference:SL2.40ch05 gene_region:4244724-4252159 transcript_region:SL2.40ch05:4244724..4252159- go_terms:GO:0010296 functional_description:"Alpha/beta hydrolase fold-3 (AHRD V1 *--- Q1BFL1_MYCSS); contains Interpro domain(s) IPR002018 Carboxylesterase, type B "; GO:0010296 NbS00013404g0005.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|0.5|2|0|169 NbS00010809g0001.1 protein AED:0.20 eAED:0.41 QI:32|0|0.5|1|0|0|2|0|98; (*GB) gi|224100023|ref|XP_002311714.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944J0|SPCS1_ARATH (e_value=6e-17) Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1;; (*TAIR) AT2G22425.2 (e_value=5e-18) | Symbols: | Microsomal signal peptidase 12 kDa subunit (SPC12) | chr2:9515079-9515357 FORWARD LENGTH=92;; (*ITAG) Solyc03g005740.1.1 (e_value=2e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:519948-520190 transcript_region:SL2.40ch03:519948..520190- go_terms:GO:0043022 functional_description:"Signal peptidase complex subunit 1 (AHRD V1 ***- B6SJA3_MAIZE); contains Interpro domain(s) IPR009542 Microsomal signal peptidase 12 kDa subunit "; GO:0043022 NbS00014743g0002.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|1|1|4|681|440; (*GB) gi|302142171|emb|CBI19374.3| (e_value=1e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10720.1 (e_value=8e-52) | Symbols: | BSD domain-containing protein | chr1:3562964-3564446 FORWARD LENGTH=429;; (*ITAG) Solyc07g022920.2.1 (e_value=1e-162) genomic_reference:SL2.40ch07 gene_region:23328209-23340163 transcript_region:SL2.40ch07:23328209..23340163- functional_description:"BSD domain containing protein expressed (AHRD V1 ***- Q851F1_ORYSJ); contains Interpro domain(s) IPR005607 BSD "; NbS00053160g0008.1 protein AED:0.20 eAED:0.20 QI:0|1|0.84|1|0.75|0.84|13|0|987; (*GB) gi|2582381|gb|AAC49874.1| (e_value=0.0) cation-chloride co-transporter [Nicotiana tabacum];; (*SWP) sp|Q2UVJ5|CCC1_ARATH (e_value=0.0) Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1;; (*TAIR) AT1G30450.2 (e_value=0.0) | Symbols: CCC1, ATCCC1, HAP5 | cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975;; (*ITAG) Solyc02g021620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13996231-14017788 transcript_region:SL2.40ch02:13996231..14017788+ go_terms:GO:0015379 functional_description:"Solute carrier family 12 (Potassium/chloride transporters) member 6 (AHRD V1 **-* A0AV76_HUMAN); contains Interpro domain(s) IPR004842 Na/K/Cl co-transporter superfamily "; GO:0015379 NbS00027015g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|104; (*ITAG) Solyc04g081040.1.1 (e_value=1e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62690791-62691060 transcript_region:SL2.40ch04:62690791..62691060- functional_description:"Unknown Protein (AHRD V1)"; NbS00009002g0104.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.16|1|1|6|0|147 NbS00009002g0109.1 protein AED:0.27 eAED:0.27 QI:0|0.82|0.83|0.94|1|1|18|308|396 NbS00009002g0103.1 protein AED:0.38 eAED:0.38 QI:82|0.5|0.71|1|1|1|7|568|282 NbS00009002g0112.1 protein AED:0.25 eAED:0.31 QI:0|0|0|1|0|0|2|0|125 NbS00009002g0111.1 protein AED:0.32 eAED:0.33 QI:0|0|0|1|0|0|2|0|96 NbS00012417g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|225439984|ref|XP_002281329.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100258555 isoform 1 [Vitis vinifera];; (*TAIR) AT5G60680.1 (e_value=1e-30) | Symbols: | Protein of unknown function, DUF584 | chr5:24386247-24386738 FORWARD LENGTH=163;; (*ITAG) Solyc09g007790.1.1 (e_value=2e-53) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:1315444-1315920 transcript_region:SL2.40ch09:1315444..1315920+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 ***- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00012417g0009.1 protein AED:0.33 eAED:0.33 QI:128|0|0.33|0.33|1|1|3|0|77 NbS00012417g0007.1 protein AED:0.43 eAED:0.43 QI:0|1|0.33|1|0|0.66|3|0|161; (*GB) gi|77999281|gb|ABB16987.1| (e_value=2e-97) unknown [Solanum tuberosum];; (*SWP) sp|Q9SKN3|CSPL6_ARATH (e_value=2e-72) CASP-like protein At2g28370 OS=Arabidopsis thaliana GN=At2g28370 PE=2 SV=1;; (*TAIR) AT2G28370.1 (e_value=1e-73) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:12132092-12133447 FORWARD LENGTH=179;; (*ITAG) Solyc10g086120.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64383467-64388684 transcript_region:SL2.40ch10:64383467..64388684- functional_description:"UPF0497 membrane protein At2g28370 (AHRD V1 ***- U4977_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00018693g0009.1 protein AED:0.13 eAED:0.13 QI:78|1|0.5|1|0|0|2|0|71; (*ITAG) Solyc02g068950.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33412749-33413130 transcript_region:SL2.40ch02:33412749..33413130- functional_description:"Unknown Protein (AHRD V1)"; NbS00018693g0008.1 protein AED:0.11 eAED:0.17 QI:0|0|0|0.66|0.5|0.33|3|0|366; (*ITAG) Solyc02g068990.2.1 (e_value=6e-25) genomic_reference:SL2.40ch02 gene_region:33516017-33518244 transcript_region:SL2.40ch02:33516017..33518244- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00018693g0007.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.2|1|1|5|0|372 NbS00036998g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|680; (*GB) gi|225423499|ref|XP_002274432.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=5e-172) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=4e-173) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc10g084540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63343022-63351761 transcript_region:SL2.40ch10:63343022..63351761+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR013209 LNS2, Lipin/Ned1/Smp2 "; NbS00036998g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|604; (*GB) gi|225439834|ref|XP_002277535.1| (e_value=0.0) PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=0.0) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G09550.1 (e_value=0.0) | Symbols: | Ankyrin repeat family protein | chr3:2932007-2934199 FORWARD LENGTH=607;; (*ITAG) Solyc10g084550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63352740-63355465 transcript_region:SL2.40ch10:63352740..63355465- functional_description:"Ankyrin-repeat protein (AHRD V1 **-- A2CIR5_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00038163g0012.1 protein AED:0.19 eAED:0.24 QI:0|0.37|0.11|0.88|0.25|0.22|9|0|788; (*GB) gi|255539268|ref|XP_002510699.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SFX2|PUB43_ARATH (e_value=0.0) U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1;; (*TAIR) AT1G76390.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811;; (*ITAG) Solyc04g082570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00053209g0004.1 protein AED:0.23 eAED:0.28 QI:319|1|0.5|1|1|1|4|0|295; (*GB) gi|115765|sp|P10708.1|CB12_SOLLC (e_value=2e-157) RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor;; (*SWP) sp|P10708|CB12_SOLLC (e_value=6e-159) Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1;; (*TAIR) AT3G61470.1 (e_value=8e-140) | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257;; (*ITAG) Solyc10g006230.2.1 (e_value=4e-160) genomic_reference:SL2.40ch10 gene_region:920027-923670 transcript_region:SL2.40ch10:920027..923670+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 7, chloroplastic (AHRD V1 ***- CB12_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00017387g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|840; (*GB) gi|148909481|gb|ABR17838.1| (e_value=5e-119) unknown [Picea sitchensis];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=1e-111) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT3G57430.1 (e_value=7e-113) | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890;; (*ITAG) Solyc09g061340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:54318173-54320272 transcript_region:SL2.40ch09:54318173..54320272- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017387g0012.1 protein AED:0.10 eAED:0.10 QI:183|0.81|0.82|1|0.68|0.64|17|475|732; (*GB) gi|255560179|ref|XP_002521107.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q8BZW8|NHLC2_MOUSE (e_value=2e-12) NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1;; (*TAIR) AT3G07060.1 (e_value=4e-179) | Symbols: emb1974 | NHL domain-containing protein | chr3:2232760-2236913 FORWARD LENGTH=774;; (*ITAG) Solyc09g061380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54567185-54585411 transcript_region:SL2.40ch09:54567185..54585411- functional_description:"NHL repeat (AHRD V1 *-*- Q3M6W0_ANAVT); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00017387g0010.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.4|1|0.75|0.8|5|0|428; (*GB) gi|356566421|ref|XP_003551430.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=1e-180) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc09g061330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:54314614-54317361 transcript_region:SL2.40ch09:54314614..54317361- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00026846g0001.1 protein AED:0.25 eAED:0.25 QI:423|0.9|0.81|1|0.9|0.81|11|245|653; (*GB) gi|225439338|ref|XP_002268304.1| (e_value=2e-151) PREDICTED: uncharacterized protein LOC100261548 [Vitis vinifera];; (*TAIR) AT5G06440.3 (e_value=1e-116) | Symbols: | BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr5:1964641-1966807 REVERSE LENGTH=479;; (*ITAG) Solyc01g006870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1430746-1436275 transcript_region:SL2.40ch01:1430746..1436275- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00009004g0015.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.5|1|0.66|0.75|4|0|729; (*GB) gi|365222916|gb|AEW69810.1| (e_value=0.0) Hop-interacting protein THI109 [Solanum lycopersicum];; (*SWP) sp|Q9LQN6|P2C04_ARATH (e_value=1e-137) Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1;; (*TAIR) AT1G07630.1 (e_value=1e-138) | Symbols: PLL5 | pol-like 5 | chr1:2349189-2351437 FORWARD LENGTH=662;; (*ITAG) Solyc06g076100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43634420-43637639 transcript_region:SL2.40ch06:43634420..43637639- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 *-*- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00009004g0002.1 protein AED:0.26 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|255585816|ref|XP_002533586.1| (e_value=1e-10) conserved hypothetical protein [Ricinus communis]; NbS00009004g0014.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0.25|1|1|1|4|0|443; (*GB) gi|197322805|gb|ACH69153.1| (e_value=0.0) actin [Nicotiana tabacum];; (*SWP) sp|Q05214|ACT1_TOBAC (e_value=0.0) Actin OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT3G12110.1 (e_value=0.0) | Symbols: ACT11 | actin-11 | chr3:3858116-3859609 FORWARD LENGTH=377;; (*ITAG) Solyc06g076090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43629241-43631739 transcript_region:SL2.40ch06:43629241..43631739+ go_terms:GO:0005200 functional_description:"Actin (AHRD V1 ***- B5M4V6_TOBAC); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00056990g0005.1 protein AED:0.35 eAED:0.35 QI:0|0.66|0.71|1|0.83|1|7|0|459; (*GB) gi|15594035|emb|CAC69852.1| (e_value=0.0) nucleic acid binding protein [Nicotiana tabacum];; (*SWP) sp|Q9SX79|RB47C_ARATH (e_value=1e-141) Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1;; (*TAIR) AT1G47490.1 (e_value=1e-142) | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17427182 FORWARD LENGTH=432;; (*ITAG) Solyc04g079310.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61412534-61417774 transcript_region:SL2.40ch04:61412534..61417774+ go_terms:GO:0042802 functional_description:"RNA Binding Protein 47 (AHRD V1 **-* Q9LEB3_NICPL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00001397g0003.1 protein AED:0.25 eAED:0.25 QI:94|0.85|1|1|0.71|0.75|8|299|277; (*GB) gi|224085383|ref|XP_002307560.1| (e_value=7e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C8L4|GLO2O_ARATH (e_value=7e-136) Hydroxyacylglutathione hydrolase 3, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3;; (*TAIR) AT1G53580.1 (e_value=5e-137) | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 | chr1:19991542-19993250 REVERSE LENGTH=294;; (*ITAG) Solyc12g011430.1.1 (e_value=2e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:4254435-4257376 transcript_region:SL2.40ch12:4254435..4257376+ go_terms:GO:0004416,GO:0047951 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** D9J0E0_9CARY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0004416,GO:0047951 NbS00046153g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.33|0|1|0.33|0.75|4|0|542; (*GB) gi|225434512|ref|XP_002278434.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WNN7|PP176_ARATH (e_value=7e-176) Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana GN=At2g30100 PE=2 SV=2;; (*TAIR) AT2G30100.1 (e_value=5e-177) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:12847828-12849520 FORWARD LENGTH=503;; (*ITAG) Solyc05g012140.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5349344-5352471 transcript_region:SL2.40ch05:5349344..5352471+ functional_description:"Pentatricopeptide repeat-containing protein At2g30100, chloroplastic (AHRD V1 ***- PP176_ARATH); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024707g0009.1 protein AED:0.11 eAED:0.11 QI:5|0.57|0.5|1|0.85|0.87|8|141|1018; (*GB) gi|224092282|ref|XP_002309542.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G25800.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:11006138-11009728 REVERSE LENGTH=987;; (*ITAG) Solyc08g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52549459-52556364 transcript_region:SL2.40ch08:52549459..52556364- functional_description:"Homology to unknown gene (AHRD V1 **-- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00024707g0008.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|1|1|2|0|489; (*GB) gi|225436279|ref|XP_002269369.1| (e_value=3e-159) PREDICTED: uncharacterized protein LOC100258455 [Vitis vinifera];; (*TAIR) AT3G19430.1 (e_value=3e-127) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc08g066590.2.1 (e_value=9e-171) genomic_reference:SL2.40ch08 gene_region:52546648-52548453 transcript_region:SL2.40ch08:52546648..52548453+ functional_description:"Root cap protein 3 (Fragment) (AHRD V1 *-*- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00024554g0008.1 protein AED:0.25 eAED:0.76 QI:16|0|0.5|1|1|1|2|0|72 NbS00024554g0011.1 protein AED:0.07 eAED:0.14 QI:0|0|0|0.66|0.5|0.33|3|0|415; (*GB) gi|356514711|ref|XP_003526047.1| (e_value=7e-57) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*TAIR) AT5G54620.1 (e_value=1e-46) | Symbols: | Ankyrin repeat family protein | chr5:22187761-22189746 REVERSE LENGTH=431;; (*ITAG) Solyc06g074280.2.1 (e_value=3e-86) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00022233g0012.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.85|0.87|8|284|545; (*GB) gi|359494755|ref|XP_002269725.2| (e_value=0.0) PREDICTED: monocopper oxidase-like protein SKU5-like [Vitis vinifera];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=0.0) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT5G48450.1 (e_value=0.0) | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635612 REVERSE LENGTH=621;; (*ITAG) Solyc09g055930.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41789605-41795151 transcript_region:SL2.40ch09:41789605..41795151- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00022233g0013.1 protein AED:0.16 eAED:0.17 QI:0|1|0.5|1|1|1|2|42|186; (*GB) gi|62867582|emb|CAI84656.1| (e_value=2e-110) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G07470.1 (e_value=5e-56) | Symbols: | Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169;; (*ITAG) Solyc06g007620.2.1 (e_value=4e-76) genomic_reference:SL2.40ch06 gene_region:1625363-1627604 transcript_region:SL2.40ch06:1625363..1627604- functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00050859g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|224140047|ref|XP_002323398.1| (e_value=9e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04820.1 (e_value=6e-25) | Symbols: ATOFP13, OFP13 | ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260;; (*ITAG) Solyc01g007810.1.1 (e_value=5e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1971082-1971978 transcript_region:SL2.40ch01:1971082..1971978- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U9N9_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00052237g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0.25|1|1|1|4|320|435; (*GB) gi|255546959|ref|XP_002514537.1| (e_value=3e-171) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-131) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-132) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g005900.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:583790-585430 transcript_region:SL2.40ch04:583790..585430+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00052237g0003.1 protein AED:0.15 eAED:0.15 QI:269|0.88|1|1|0.66|0.6|10|253|571; (*GB) gi|225425033|ref|XP_002269902.1| (e_value=0.0) PREDICTED: protein NSP-INTERACTING KINASE 1 [Vitis vinifera];; (*SWP) sp|Q9LFS4|NIK1_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1;; (*TAIR) AT5G16000.1 (e_value=0.0) | Symbols: NIK1 | NSP-interacting kinase 1 | chr5:5224264-5227003 FORWARD LENGTH=638;; (*ITAG) Solyc04g005910.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:585686-590298 transcript_region:SL2.40ch04:585686..590298- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018967g0011.1 protein AED:0.13 eAED:0.13 QI:52|1|0.5|1|0|0.5|2|0|191; (*GB) gi|225454046|ref|XP_002263231.1| (e_value=1e-86) PREDICTED: 50S ribosomal protein L18 [Vitis vinifera];; (*TAIR) AT3G20230.1 (e_value=1e-79) | Symbols: | Ribosomal L18p/L5e family protein | chr3:7055639-7056679 REVERSE LENGTH=187;; (*ITAG) Solyc01g088470.2.1 (e_value=2e-86) genomic_reference:SL2.40ch01 gene_region:75027075-75027747 transcript_region:SL2.40ch01:75027075..75027747+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 family (AHRD V1 ***- D7LAX4_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00018967g0012.1 protein AED:0.23 eAED:0.23 QI:239|0.87|1|1|0.62|0.66|9|207|173; (*GB) gi|388503986|gb|AFK40059.1| (e_value=7e-91) unknown [Lotus japonicus];; (*SWP) sp|O04905|UMPK_ARATH (e_value=2e-88) UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1;; (*TAIR) AT5G26667.3 (e_value=2e-89) | Symbols: PYR6 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9276659-9278091 FORWARD LENGTH=202;; (*ITAG) Solyc01g088480.2.1 (e_value=5e-108) genomic_reference:SL2.40ch01 gene_region:75027869-75031880 transcript_region:SL2.40ch01:75027869..75031880- go_terms:GO:0006139 functional_description:"Adenylate kinase (AHRD V1 ***- Q9XHP7_CERRI); contains Interpro domain(s) IPR006266 UMP-CMP kinase "; GO:0006139 NbS00018967g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|304; (*GB) gi|225446521|ref|XP_002278909.1| (e_value=9e-123) PREDICTED: pentatricopeptide repeat-containing protein At1g06270 [Vitis vinifera];; (*SWP) sp|Q9LNC0|PPR16_ARATH (e_value=3e-108) Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1;; (*TAIR) AT1G06270.1 (e_value=3e-109) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:1918242-1919273 REVERSE LENGTH=343;; (*ITAG) Solyc01g088490.2.1 (e_value=1e-172) genomic_reference:SL2.40ch01 gene_region:75036569-75037672 transcript_region:SL2.40ch01:75036569..75037672- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KG17_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018967g0004.1 protein AED:0.70 eAED:0.77 QI:0|0.25|0.2|0.8|1|1|5|0|117; (*GB) gi|19774139|gb|AAL99046.1|AF487528_1 (e_value=5e-42) D1 protease precursor [Nicotiana plumbaginifolia];; (*TAIR) AT4G17740.2 (e_value=2e-39) | Symbols: | Peptidase S41 family protein | chr4:9867088-9869719 REVERSE LENGTH=505;; (*ITAG) Solyc12g097030.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64033732-64040777 transcript_region:SL2.40ch12:64033732..64040777+ go_terms:GO:0006508,GO:0005515 functional_description:"Carboxyl-terminal processing protease (AHRD V1 ***- Q5N158_SYNP6); contains Interpro domain(s) IPR005151 Peptidase S41 "; GO:0006508,GO:0005515 NbS00028886g0005.1 protein AED:0.10 eAED:0.11 QI:0|0.75|0.6|1|1|1|5|315|486; (*GB) gi|38096048|gb|AAR10887.1| (e_value=0.0) inosine-5'-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SA34|IMDH2_ARATH (e_value=0.0) Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1;; (*TAIR) AT1G16350.1 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr1:5590951-5592872 FORWARD LENGTH=502;; (*ITAG) Solyc10g079500.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60360530-60363081 transcript_region:SL2.40ch10:60360530..60363081+ go_terms:GO:0008152,GO:0055114 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- A7XZM6_CAMSI); contains Interpro domain(s) IPR005990 IMP dehydrogenase "; GO:0008152,GO:0055114 NbS00028886g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|3|0|150; (*GB) gi|224086877|ref|XP_002307991.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g079530.1.1 (e_value=1e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60385164-60386750 transcript_region:SL2.40ch10:60385164..60386750+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00056699g0001.1 protein AED:0.60 eAED:0.68 QI:0|0|0|0.5|1|1|4|0|130; (*GB) gi|351727941|ref|NP_001236666.1| (e_value=7e-85) uncharacterized protein LOC100305531 [Glycine max];; (*SWP) sp|Q9ZQX4|VATF_ARATH (e_value=3e-77) V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1;; (*TAIR) AT4G02620.1 (e_value=3e-78) | Symbols: | vacuolar ATPase subunit F family protein | chr4:1149419-1151132 REVERSE LENGTH=128;; (*ITAG) Solyc02g068450.2.1 (e_value=1e-78) genomic_reference:SL2.40ch02 gene_region:32973653-32978760 transcript_region:SL2.40ch02:32973653..32978760+ go_terms:GO:0046961 functional_description:"Vacuolar ATPase F subunit (AHRD V1 **** B8Y6I1_HEVBR); contains Interpro domain(s) IPR005772 ATPase, V1 complex, subunit F, eukaryotic "; GO:0046961 NbS00007456g0006.1 protein AED:0.39 eAED:0.44 QI:0|0|0|0.75|0|0.5|4|0|99; (*GB) gi|255557018|ref|XP_002519542.1| (e_value=1e-18) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|P85193|PK01_HELAN (e_value=3e-17) Putative serine/threonine-protein kinase (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*ITAG) Solyc10g084110.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63093878-63096332 transcript_region:SL2.40ch10:63093878..63096332+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- C6FF64_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007456g0005.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.66|1|1|1|3|85|163; (*GB) gi|349891782|gb|AEQ20672.1| (e_value=3e-71) PIP2;1 [Karelinia caspia];; (*SWP) sp|Q9ATM6|PIP24_MAIZE (e_value=2e-66) Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1;; (*TAIR) AT3G53420.2 (e_value=1e-65) | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane intrinsic protein 2A | chr3:19803906-19805454 REVERSE LENGTH=287;; (*ITAG) Solyc09g007760.2.1 (e_value=2e-73) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00012615g0018.1 protein AED:0.04 eAED:0.04 QI:192|0.5|1|1|0|0.66|3|571|35 NbS00012615g0021.1 protein AED:0.20 eAED:0.20 QI:35|1|0.5|1|1|1|2|0|111 NbS00012615g0017.1 protein AED:0.34 eAED:0.34 QI:348|0.66|0.75|1|0.33|0.5|4|293|216; (*GB) gi|225464884|ref|XP_002273425.1| (e_value=5e-38) PREDICTED: mRNA-decapping enzyme-like protein [Vitis vinifera];; (*ITAG) Solyc01g009390.2.1 (e_value=6e-47) genomic_reference:SL2.40ch01 gene_region:3594868-3601273 transcript_region:SL2.40ch01:3594868..3601273- functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; NbS00012615g0025.1 protein AED:0.26 eAED:0.28 QI:134|0.76|0.85|1|0.69|0.85|14|561|554; (*GB) gi|255565711|ref|XP_002523845.1| (e_value=0.0) Nicalin precursor, putative [Ricinus communis];; (*SWP) sp|Q969V3|NCLN_HUMAN (e_value=4e-47) Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2;; (*TAIR) AT3G44330.1 (e_value=0.0) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc01g009380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3572360-3591567 transcript_region:SL2.40ch01:3572360..3591567+ go_terms:GO:0005515 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0005515 NbS00012615g0011.1 protein AED:0.41 eAED:0.58 QI:0|0|0|0.66|1|1|3|0|247; (*GB) gi|357159407|ref|XP_003578437.1| (e_value=3e-21) PREDICTED: adrenodoxin-like protein, mitochondrial-like [Brachypodium distachyon];; (*TAIR) AT3G07480.1 (e_value=1e-21) | Symbols: | 2Fe-2S ferredoxin-like superfamily protein | chr3:2389026-2389505 FORWARD LENGTH=159;; (*ITAG) Solyc06g007630.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1644026-1644511 transcript_region:SL2.40ch06:1644026..1644511+ go_terms:GO:0009055 functional_description:"Ferredoxin (AHRD V1 ***- B6TR21_MAIZE); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0009055 NbS00060274g0003.1 protein AED:0.25 eAED:0.25 QI:408|1|0|1|1|1|2|0|266; (*GB) gi|82697969|gb|ABB89019.1| (e_value=2e-136) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q9LK21|CXE11_ARATH (e_value=4e-131) Probable carboxylesterase 11 OS=Arabidopsis thaliana GN=CXE11 PE=2 SV=1;; (*TAIR) AT3G27320.2 (e_value=1e-132) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:10090307-10092391 FORWARD LENGTH=428;; (*ITAG) Solyc05g014320.2.1 (e_value=6e-170) genomic_reference:SL2.40ch05 gene_region:8154699-8157508 transcript_region:SL2.40ch05:8154699..8157508- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbC26067292g0002.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0|0.5|2|0|165; (*GB) gi|2346976|dbj|BAA21922.1| (e_value=3e-66) ZPT2-13 [Petunia x hybrida];; (*SWP) sp|Q9SLD4|ZAT11_ARATH (e_value=4e-26) Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1;; (*TAIR) AT3G53600.1 (e_value=3e-28) | Symbols: | C2H2-type zinc finger family protein | chr3:19875532-19876059 FORWARD LENGTH=175;; (*ITAG) Solyc11g073060.1.1 (e_value=4e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53255537-53256001 transcript_region:SL2.40ch11:53255537..53256001- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LJS8_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00002417g0003.1 protein AED:0.01 eAED:0.01 QI:791|1|1|1|0|0|4|21|67 NbS00031482g0006.1 protein AED:0.27 eAED:0.27 QI:210|1|1|1|0.92|0.92|14|327|506; (*GB) gi|294440430|gb|ADE74632.1| (e_value=0.0) aspartic protease 1 [Nicotiana tabacum];; (*SWP) sp|Q42456|ASPR1_ORYSJ (e_value=0.0) Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc01g101240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82818855-82824013 transcript_region:SL2.40ch01:82818855..82824013+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **** ASPRX_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00031482g0005.1 protein AED:0.21 eAED:0.36 QI:0|0|0|1|1|1|2|0|67; (*ITAG) Solyc01g101260.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:82833017-82833752 transcript_region:SL2.40ch01:82833017..82833752+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031482g0007.1 protein AED:0.29 eAED:0.32 QI:0|0.83|0.71|1|0.83|0.85|7|419|356; (*GB) gi|359487591|ref|XP_003633617.1| (e_value=2e-145) PREDICTED: G patch domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|A2A6A1|GPTC8_MOUSE (e_value=9e-31) G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=2 SV=1;; (*TAIR) AT5G26610.3 (e_value=1e-111) | Symbols: | D111/G-patch domain-containing protein | chr5:9375456-9376991 FORWARD LENGTH=301;; (*ITAG) Solyc01g101250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82824272-82828065 transcript_region:SL2.40ch01:82824272..82828065- go_terms:GO:0005622 functional_description:"D111/G-patch domain-containing protein (AHRD V1 **-- D7M5C5_ARALY); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00047214g0005.1 protein AED:0.13 eAED:0.13 QI:109|0.87|0.94|1|0.93|0.94|17|57|447; (*GB) gi|225433446|ref|XP_002285679.1| (e_value=0.0) PREDICTED: probable DNA primase large subunit [Vitis vinifera];; (*SWP) sp|Q84WJ2|PRI2_ARATH (e_value=0.0) Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2;; (*TAIR) AT1G67320.2 (e_value=0.0) | Symbols: | DNA primase, large subunit family | chr1:25205520-25208966 REVERSE LENGTH=454;; (*ITAG) Solyc04g045530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:32864100-32873431 transcript_region:SL2.40ch04:32864100..32873431+ go_terms:GO:0003896 functional_description:"DNA primase large subunit (AHRD V1 **** B5X2T9_SALSA); contains Interpro domain(s) IPR016558 DNA primase, large subunit, eukaryotic "; GO:0003896 NbS00034882g0013.1 protein AED:0.14 eAED:0.18 QI:253|0.8|0.83|1|0.8|1|6|0|650; (*GB) gi|359482068|ref|XP_002272910.2| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=6e-148) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G02010.1 (e_value=0.0) | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide exchange factor 7 | chr5:383493-385698 FORWARD LENGTH=546;; (*ITAG) Solyc10g086660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64763651-64766723 transcript_region:SL2.40ch10:64763651..64766723- go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00034882g0014.1 protein AED:0.06 eAED:0.06 QI:138|1|1|1|0.75|0.6|5|470|128; (*GB) gi|388513781|gb|AFK44952.1| (e_value=3e-73) unknown [Medicago truncatula];; (*SWP) sp|Q6P8E9|NH2L1_XENTR (e_value=9e-63) NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1;; (*TAIR) AT4G22380.1 (e_value=5e-72) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr4:11812041-11812922 REVERSE LENGTH=128;; (*ITAG) Solyc09g092080.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:66580614-66583077 transcript_region:SL2.40ch09:66580614..66583077+ go_terms:GO:0005515,GO:0030515 functional_description:"50S ribosomal protein L7Ae (AHRD V1 **-- B2WJB2_PYRTR); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; GO:0005515,GO:0030515 NbS00034882g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|147770640|emb|CAN73406.1| (e_value=1e-22) hypothetical protein VITISV_024368 [Vitis vinifera];; (*ITAG) Solyc09g011430.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4757131-4757559 transcript_region:SL2.40ch09:4757131..4757559+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023368g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|505; (*GB) gi|225461979|ref|XP_002267354.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g66520 [Vitis vinifera];; (*SWP) sp|Q9FJY7|PP449_ARATH (e_value=5e-167) Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1;; (*TAIR) AT5G66520.1 (e_value=4e-168) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=620;; (*ITAG) Solyc07g065730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64617433-64619313 transcript_region:SL2.40ch07:64617433..64619313- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00023368g0001.1 protein AED:0.39 eAED:0.39 QI:327|1|0.5|1|0|0|2|0|94; (*GB) gi|296082959|emb|CBI22260.3| (e_value=2e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G29170.1 (e_value=1e-22) | Symbols: | Eukaryotic protein of unknown function (DUF872) | chr3:11136240-11137542 REVERSE LENGTH=121;; (*ITAG) Solyc07g065740.2.1 (e_value=3e-30) genomic_reference:SL2.40ch07 gene_region:64619737-64620846 transcript_region:SL2.40ch07:64619737..64620846- functional_description:"UPF0414 transmembrane protein C20orf30 homolog (AHRD V1 ***- B5X9I3_SALSA); contains Interpro domain(s) IPR008590 Uncharacterised protein family UPF0414 "; NbS00005420g0002.1 protein AED:0.05 eAED:0.05 QI:0|0.6|0.33|1|1|1|6|0|593; (*GB) gi|255544862|ref|XP_002513492.1| (e_value=7e-111) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G51405.1 (e_value=1e-65) | Symbols: | myosin-related | chr1:19057780-19059582 FORWARD LENGTH=487;; (*ITAG) Solyc11g065630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48235984-48241367 transcript_region:SL2.40ch11:48235984..48241367+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009598g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|225433059|ref|XP_002281036.1| (e_value=1e-35) PREDICTED: ethylene-responsive transcription factor ERF098-like [Vitis vinifera];; (*SWP) sp|Q9LTC5|ERF98_ARATH (e_value=6e-28) Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1;; (*TAIR) AT3G23230.1 (e_value=5e-29) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8289647-8290066 REVERSE LENGTH=139;; (*ITAG) Solyc09g089920.1.1 (e_value=3e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64870292-64870750 transcript_region:SL2.40ch09:64870292..64870750- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-** EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00009598g0009.1 protein AED:0.43 eAED:0.57 QI:0|0|0|1|0|0.5|2|0|70 NbS00009598g0010.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|0|0.33|3|0|92 NbS00009598g0004.1 protein AED:0.44 eAED:0.44 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|310892572|gb|ADP37428.1| (e_value=2e-27) ethylene-responsive-element-binding factor 13 [Petunia x hybrida];; (*SWP) sp|Q9LTC6|ERF95_ARATH (e_value=4e-18) Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1;; (*TAIR) AT3G23220.1 (e_value=3e-19) | Symbols: | Integrase-type DNA-binding superfamily protein | chr3:8287969-8288388 FORWARD LENGTH=139;; (*ITAG) Solyc09g089910.1.1 (e_value=6e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64866925-64867356 transcript_region:SL2.40ch09:64866925..64867356+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-*- C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00009598g0002.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.25|1|1|4|0|353; (*GB) gi|242073454|ref|XP_002446663.1| (e_value=7e-23) hypothetical protein SORBIDRAFT_06g020040 [Sorghum bicolor];; (*SWP) sp|Q9SWG3|FAR1_ARATH (e_value=1e-16) Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1;; (*TAIR) AT4G15090.1 (e_value=1e-17) | Symbols: FAR1 | FRS (FAR1 Related Sequences) transcription factor family | chr4:8614806-8617870 FORWARD LENGTH=827;; (*ITAG) Solyc01g067920.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69321148-69323144 transcript_region:SL2.40ch01:69321148..69323144+ go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00009598g0011.1 protein AED:0.27 eAED:0.32 QI:0|0|0|1|0|0|3|0|254; (*GB) gi|54261828|gb|AAV31178.1| (e_value=4e-24) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc10g044500.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00009598g0012.1 protein AED:0.40 eAED:0.53 QI:0|0|0|1|0|0|3|0|103; (*ITAG) Solyc09g056490.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:44960018-44962489 transcript_region:SL2.40ch09:44960018..44962489+ go_terms:GO:0008270 functional_description:"MuDRA transposase-like (AHRD V1 *-*- Q5GIT1_CUCME); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00015171g0002.1 protein AED:0.10 eAED:0.10 QI:102|0|0.5|1|0|1|2|630|292; (*GB) gi|224144926|ref|XP_002336185.1| (e_value=1e-98) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SND9|Y3028_ARATH (e_value=3e-60) Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1;; (*TAIR) AT5G38130.1 (e_value=3e-62) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:15217956-15219344 REVERSE LENGTH=462;; (*ITAG) Solyc08g005890.2.1 (e_value=2e-143) genomic_reference:SL2.40ch08 gene_region:681340-683496 transcript_region:SL2.40ch08:681340..683496- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl transferase (AHRD V1 **-* D2XJ64_9MAGN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00015171g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|624; (*GB) gi|225460985|ref|XP_002280336.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=2e-16) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT1G50660.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc12g005010.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00002452g0016.1 protein AED:0.28 eAED:0.32 QI:0|0|0|0.4|1|1|5|0|188; (*ITAG) Solyc10g076170.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58305883-58306419 transcript_region:SL2.40ch10:58305883..58306419+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002452g0010.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc00g020000.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806347-11806520 transcript_region:SL2.40ch00:11806347..11806520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002452g0029.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|1|0|0|2|0|76; (*ITAG) Solyc12g038990.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37195052-37195508 transcript_region:SL2.40ch12:37195052..37195508- functional_description:"Unknown Protein (AHRD V1)"; NbS00002452g0028.1 protein AED:0.19 eAED:0.30 QI:0|0|0|1|0|0|3|0|240; (*GB) gi|1304247|dbj|BAA12352.1| (e_value=1e-118) ABC-type heme transporter subunit [Solanum lycopersicum];; (*SWP) sp|P93280|CCMB_ARATH (e_value=3e-80) Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMB PE=2 SV=2;; (*ITAG) ATMG00110.1 (e_value=6e-111) | Symbols: CCB206 | cytochrome C biogenesis 206 | chrM:30463-31083 FORWARD LENGTH=206;; (*ITAG) Solyc00g020040.1.1 (e_value=3e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11809684-11810304 transcript_region:SL2.40ch00:11809684..11810304+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis (Fragment) (AHRD V1 ***- A4KXV6_9ROSI); contains Interpro domain(s) IPR003544 Cytochrome c-type biogenesis protein CcmB "; GO:0016020 NbS00002452g0027.1 protein AED:0.06 eAED:0.30 QI:0|0|0|1|0|0|2|0|148; (*GB) gi|57014011|ref|YP_173482.1| (e_value=4e-67) hypothetical protein NitaMp145 [Nicotiana tabacum]; NbS00002452g0033.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|0|0|3|0|112; (*ITAG) Solyc11g063480.1.1 (e_value=8e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00002452g0024.1 protein AED:0.48 eAED:0.68 QI:0|0|0|1|0|0|3|0|97; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=3e-19) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=9e-15) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=7e-16) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=3e-22) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00002452g0026.1 protein AED:0.70 eAED:0.72 QI:80|0|0|0.33|0|0|3|0|88; (*GB) gi|57014014|ref|YP_173485.1| (e_value=6e-26) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P92812|RM02_ORYSJ (e_value=2e-25) 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2;; (*TAIR) AT2G07715.1 (e_value=2e-24) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:3411180-3412694 FORWARD LENGTH=389; NbS00002452g0032.1 protein AED:0.32 eAED:0.49 QI:0|0|0|1|0|0|2|0|66; (*ITAG) Solyc11g063490.1.1 (e_value=4e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:46701784-46701960 transcript_region:SL2.40ch11:46701784..46701960- functional_description:"Unknown Protein (AHRD V1)"; NbS00026902g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.33|0.5|0.75|0|0.25|4|0|186; (*GB) gi|255536745|ref|XP_002509439.1| (e_value=7e-76) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q688X9|DI191_ORYSJ (e_value=8e-43) Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1;; (*TAIR) AT3G05700.1 (e_value=6e-14) | Symbols: | Drought-responsive family protein | chr3:1682432-1684323 REVERSE LENGTH=223;; (*ITAG) Solyc02g077750.2.1 (e_value=1e-50) genomic_reference:SL2.40ch02 gene_region:37193303-37193923 transcript_region:SL2.40ch02:37193303..37193923+ functional_description:"Fiber protein Fb2 (AHRD V1 **-- B3TLS9_ELAGV); contains Interpro domain(s) IPR008598 Drought induced 19 "; NbS00026902g0005.1 protein AED:0.25 eAED:0.25 QI:0|1|0.85|1|1|1|7|0|613; (*GB) gi|359483765|ref|XP_002273740.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243637 [Vitis vinifera];; (*SWP) sp|Q9SGN6|NSL1_ARATH (e_value=0.0) MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=1 SV=1;; (*TAIR) AT1G28380.1 (e_value=0.0) | Symbols: NSL1 | MAC/Perforin domain-containing protein | chr1:9963696-9966060 FORWARD LENGTH=612;; (*ITAG) Solyc02g077780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37203757-37212202 transcript_region:SL2.40ch02:37203757..37212202- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00009106g0002.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|68 NbS00009106g0014.1 protein AED:0.40 eAED:0.65 QI:36|0|0.5|1|0|0|2|513|17 NbS00009106g0013.1 protein AED:0.11 eAED:0.11 QI:95|0.77|0.9|1|0.55|0.5|10|409|540; (*GB) gi|559921|emb|CAA56570.1| (e_value=0.0) axi 1 [Nicotiana tabacum];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=4e-73) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G20550.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7115485-7117936 REVERSE LENGTH=564;; (*ITAG) Solyc01g112070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89940951-89944973 transcript_region:SL2.40ch01:89940951..89944973- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00009106g0015.1 protein AED:0.26 eAED:0.28 QI:0|0.62|0.44|1|0.62|0.77|9|0|402; (*GB) gi|357467621|ref|XP_003604095.1| (e_value=0.0) hypothetical protein MTR_3g118430 [Medicago truncatula];; (*SWP) sp|P48279|YCF39_CYAPA (e_value=2e-95) Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3 SV=1;; (*TAIR) AT4G35250.1 (e_value=0.0) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16771401-16773269 REVERSE LENGTH=395;; (*ITAG) Solyc01g112060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89936997-89940250 transcript_region:SL2.40ch01:89936997..89940250- go_terms:GO:0008152 functional_description:"NmrA family protein (AHRD V1 **-- B2J8Q2_NOSP7); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00039727g0005.1 protein AED:0.35 eAED:0.35 QI:132|0.83|0.84|1|0.66|0.61|13|0|645; (*GB) gi|359481547|ref|XP_002276911.2| (e_value=0.0) PREDICTED: phosphoglycerate kinase-like [Vitis vinifera];; (*SWP) sp|P12783|PGKY_WHEAT (e_value=2e-47) Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G56190.1 (e_value=3e-45) | Symbols: | Phosphoglycerate kinase family protein | chr1:21028403-21030454 FORWARD LENGTH=478;; (*ITAG) Solyc09g008130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1600648-1607197 transcript_region:SL2.40ch09:1600648..1607197- go_terms:GO:0006096,GO:0006400 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- B9IFP7_POPTR); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0006096,GO:0006400 NbS00000165g0004.1 protein AED:0.22 eAED:0.27 QI:0|0|0|1|0|0|2|0|247; (*GB) gi|255565723|ref|XP_002523851.1| (e_value=1e-38) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SIH5|FB322_ARATH (e_value=1e-29) Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At2g36090 PE=2 SV=1;; (*TAIR) AT2G36090.1 (e_value=9e-31) | Symbols: | F-box family protein | chr2:15158631-15159584 FORWARD LENGTH=317;; (*ITAG) Solyc11g068710.1.1 (e_value=8e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50421963-50422568 transcript_region:SL2.40ch11:50421963..50422568+ functional_description:"F-box family protein (AHRD V1 ***- B9MYU0_POPTR)"; NbS00031627g0001.1 protein AED:0.48 eAED:0.48 QI:0|1|0.5|1|1|1|2|0|254; (*GB) gi|224139494|ref|XP_002323139.1| (e_value=8e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK5|RAA5A_ARATH (e_value=5e-132) Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1;; (*TAIR) AT5G47520.1 (e_value=4e-133) | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277596-19278366 REVERSE LENGTH=221;; (*ITAG) Solyc11g012460.1.1 (e_value=6e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5297608-5298810 transcript_region:SL2.40ch11:5297608..5298810+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_RABIT); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0003924 NbS00031627g0006.1 protein AED:0.21 eAED:0.21 QI:13|1|0.75|1|0.33|0.25|4|547|481; (*GB) gi|225447606|ref|XP_002272993.1| (e_value=3e-180) PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=2e-54) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G07810.1 (e_value=5e-140) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc11g012470.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5302951-5305498 transcript_region:SL2.40ch11:5302951..5305498- go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00036239g0006.1 protein AED:0.18 eAED:0.18 QI:34|0.91|1|1|0.83|0.92|13|197|439; (*GB) gi|225458878|ref|XP_002283413.1| (e_value=7e-161) PREDICTED: serine carboxypeptidase-like 2-like [Vitis vinifera];; (*SWP) sp|Q9C7D6|SCP17_ARATH (e_value=2e-140) Serine carboxypeptidase-like 17 OS=Arabidopsis thaliana GN=SCPL17 PE=2 SV=1;; (*TAIR) AT3G12203.1 (e_value=1e-141) | Symbols: scpl17 | serine carboxypeptidase-like 17 | chr3:3891357-3893956 REVERSE LENGTH=437;; (*ITAG) Solyc12g088250.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62151782-62155452 transcript_region:SL2.40ch12:62151782..62155452+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00036239g0005.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|0.5|2|0|55; (*ITAG) Solyc12g088270.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62160851-62161689 transcript_region:SL2.40ch12:62160851..62161689+ go_terms:GO:0006508 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0006508 NbS00043672g0006.1 protein AED:0.02 eAED:0.02 QI:170|0.66|0.75|1|1|1|4|0|1083; (*GB) gi|359473483|ref|XP_002267498.2| (e_value=0.0) PREDICTED: putative U-box domain-containing protein 42-like [Vitis vinifera];; (*SWP) sp|Q9CAA7|PUB42_ARATH (e_value=0.0) Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1;; (*TAIR) AT1G68940.1 (e_value=0.0) | Symbols: | Armadillo/beta-catenin-like repeat family protein | chr1:25922001-25925374 REVERSE LENGTH=1033;; (*ITAG) Solyc05g010650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4861481-4865874 transcript_region:SL2.40ch05:4861481..4865874- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00043672g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.94|0.9|0.95|0.57|0.6|20|2425|406; (*GB) gi|34925359|sp|Q93Y94.1|RPOT1_NICSY (e_value=0.0) RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName: Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 1; Flags: Precursor;; (*SWP) sp|Q93Y94|RPOT1_NICSY (e_value=0.0) DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1;; (*TAIR) AT1G68990.1 (e_value=7e-56) | Symbols: MGP3 | male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=976;; (*ITAG) Solyc05g010660.2.1 (e_value=5e-177) genomic_reference:SL2.40ch05 gene_region:4868186-4882265 transcript_region:SL2.40ch05:4868186..4882265- go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9HIV5_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00045330g0005.1 protein AED:0.37 eAED:0.41 QI:0|0|0|1|0.5|0.33|3|0|313; (*GB) gi|224112397|ref|XP_002316174.1| (e_value=3e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=2e-27) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT1G65450.1 (e_value=5e-99) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:24315875-24318895 FORWARD LENGTH=450;; (*ITAG) Solyc11g008630.1.1 (e_value=5e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2820292-2822959 transcript_region:SL2.40ch11:2820292..2822959+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00045330g0004.1 protein AED:0.43 eAED:0.48 QI:0|0|0.5|1|0|0|2|0|166; (*GB) gi|268326826|emb|CAT00084.1| (e_value=6e-68) hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Coffea arabica];; (*SWP) sp|Q9FI78|HCT_ARATH (e_value=1e-15) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Arabidopsis thaliana GN=HCT PE=2 SV=1;; (*TAIR) AT1G65450.2 (e_value=9e-61) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:24315875-24316491 FORWARD LENGTH=166;; (*ITAG) Solyc11g008630.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2820292-2822959 transcript_region:SL2.40ch11:2820292..2822959+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00015851g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|0|0|3|0|105; (*GB) gi|27151496|sp|Q9ATE5.1|FBP24_PETHY (e_value=3e-45) RecName: Full=MADS-box protein FBP24; AltName: Full=Floral-binding protein 24;; (*SWP) sp|Q9ATE5|FBP24_PETHY (e_value=9e-47) MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1;; (*TAIR) AT5G23260.2 (e_value=7e-19) | Symbols: TT16, ABS, AGL32 | K-box region and MADS-box transcription factor family protein | chr5:7836442-7838340 FORWARD LENGTH=252;; (*ITAG) Solyc11g005120.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:107329-109329 transcript_region:SL2.40ch11:107329..109329- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor 29 (AHRD V1 **** B6TVD9_MAIZE); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003700 NbS00015851g0001.1 protein AED:0.29 eAED:0.30 QI:0|0.83|0.57|0.85|1|1|7|0|280; (*GB) gi|388521947|gb|AFK49035.1| (e_value=6e-107) unknown [Lotus japonicus];; (*SWP) sp|Q2HJC9|PQBP1_BOVIN (e_value=5e-22) Polyglutamine-binding protein 1 OS=Bos taurus GN=PQBP1 PE=2 SV=1;; (*TAIR) AT2G41020.1 (e_value=2e-92) | Symbols: | WW domain-containing protein | chr2:17117425-17120901 FORWARD LENGTH=463;; (*ITAG) Solyc11g005110.1.1 (e_value=1e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:92574-105206 transcript_region:SL2.40ch11:92574..105206- go_terms:GO:0005515 functional_description:"Polyglutamine binding protein 1 (AHRD V1 *-*- A2AER7_MOUSE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00058749g0001.1 protein AED:0.22 eAED:0.23 QI:0|1|0|1|1|1|2|0|609; (*GB) gi|1200256|emb|CAA62476.1| (e_value=0.0) stpk1 protein kinase [Solanum tuberosum];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=0.0) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT3G27580.2 (e_value=0.0) | Symbols: ATPK7 | Protein kinase superfamily protein | chr3:10217671-10219484 REVERSE LENGTH=578;; (*ITAG) Solyc02g093360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48831308-48835273 transcript_region:SL2.40ch02:48831308..48835273+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00027827g0005.1 protein AED:0.40 eAED:0.55 QI:0|0.2|0.16|1|0|0.16|6|463|298; (*GB) gi|302142981|emb|CBI20276.3| (e_value=6e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUH3|LAL5_ARATH (e_value=1e-32) MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1;; (*TAIR) AT3G23550.1 (e_value=1e-33) | Symbols: | MATE efflux family protein | chr3:8448435-8450649 REVERSE LENGTH=469;; (*ITAG) Solyc10g007360.2.1 (e_value=2e-58) genomic_reference:SL2.40ch10 gene_region:1745159-1749319 transcript_region:SL2.40ch10:1745159..1749319- go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_YERE8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00001669g0005.1 protein AED:0.24 eAED:0.25 QI:56|0.55|0.5|1|0.66|0.7|10|524|635; (*GB) gi|255540631|ref|XP_002511380.1| (e_value=3e-103) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G63000.1 (e_value=2e-98) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:25280151-25281463 REVERSE LENGTH=201;; (*ITAG) Solyc03g112810.2.1 (e_value=9e-124) genomic_reference:SL2.40ch03 gene_region:57180241-57183176 transcript_region:SL2.40ch03:57180241..57183176+ functional_description:"Unknown Protein (AHRD V1)"; NbC25109491g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|249; (*GB) gi|74273683|gb|AAA13372.2| (e_value=1e-154) cytosolic pyruvate kinase [Solanum tuberosum];; (*SWP) sp|P22200|KPYC_SOLTU (e_value=2e-155) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=7e-152) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=4e-159) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00037901g0002.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|3|0|415; (*GB) gi|224086873|ref|XP_002307990.1| (e_value=2e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=9e-12) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50140.1 (e_value=7e-28) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18592472-18594562 REVERSE LENGTH=539;; (*ITAG) Solyc10g079530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60385164-60386750 transcript_region:SL2.40ch10:60385164..60386750+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00002816g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|307; (*GB) gi|359486567|ref|XP_002280470.2| (e_value=2e-119) PREDICTED: LOW QUALITY PROTEIN: UDP-glycosyltransferase 85A1-like [Vitis vinifera];; (*SWP) sp|Q9M9E7|U85A4_ARATH (e_value=5e-58) UDP-glycosyltransferase 85A4 OS=Arabidopsis thaliana GN=UGT85A4 PE=2 SV=1;; (*TAIR) AT1G78270.1 (e_value=4e-59) | Symbols: AtUGT85A4, UGT85A4 | UDP-glucosyl transferase 85A4 | chr1:29450691-29452223 REVERSE LENGTH=489;; (*ITAG) Solyc02g091370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47260723-47262419 transcript_region:SL2.40ch02:47260723..47262419+ go_terms:GO:0015020 functional_description:"Glucosyltransferase-2 (AHRD V1 ***- Q8S9A7_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00023431g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|359489278|ref|XP_002273974.2| (e_value=8e-59) PREDICTED: ethylene-responsive transcription factor ERF034-like [Vitis vinifera];; (*SWP) sp|Q8LBQ7|ERF34_ARATH (e_value=1e-49) Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2;; (*TAIR) AT2G44940.1 (e_value=9e-51) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295;; (*ITAG) Solyc01g090560.2.1 (e_value=4e-90) genomic_reference:SL2.40ch01 gene_region:75989194-75990408 transcript_region:SL2.40ch01:75989194..75990408+ go_terms:GO:0005125,GO:0005138 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005125,GO:0005138 NbS00023431g0004.1 protein AED:0.18 eAED:0.18 QI:71|1|1|1|1|1|3|402|43 NbS00043089g0005.1 protein AED:0.09 eAED:0.09 QI:202|1|1|1|1|1|9|45|992; (*GB) gi|359472765|ref|XP_002276004.2| (e_value=0.0) PREDICTED: copper-transporting ATPase RAN1-like [Vitis vinifera];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=0.0) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=0.0) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00043089g0003.1 protein AED:0.68 eAED:0.70 QI:0|0|0|0.75|1|1|4|0|137 NbS00049725g0001.1 protein AED:0.49 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|55 NbS00009810g0010.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|1|1|6|297|440; (*GB) gi|225446643|ref|XP_002281166.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase PBS1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=6e-100) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G58690.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr3:21709369-21711246 FORWARD LENGTH=400;; (*ITAG) Solyc07g055180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60621946-60625746 transcript_region:SL2.40ch07:60621946..60625746+ go_terms:GO:0004672 functional_description:"Receptor protein kinase-like protein (AHRD V1 **** Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00009810g0012.1 protein AED:0.12 eAED:0.13 QI:0|0.5|0|1|0|0.33|3|0|444; (*GB) gi|224071449|ref|XP_002303465.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJI7|PLA20_ARATH (e_value=4e-157) Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1;; (*TAIR) AT2G42690.1 (e_value=3e-158) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17776356-17777682 REVERSE LENGTH=412;; (*ITAG) Solyc07g055160.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60615374-60618303 transcript_region:SL2.40ch07:60615374..60618303- go_terms:GO:0047714,GO:0008970 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00009810g0011.1 protein AED:0.15 eAED:0.15 QI:434|1|1|1|0.5|0.57|7|549|239; (*GB) gi|359485291|ref|XP_002280878.2| (e_value=2e-134) PREDICTED: 2-aminoethanethiol dioxygenase [Vitis vinifera];; (*SWP) sp|Q6PDY2|AEDO_MOUSE (e_value=5e-24) 2-aminoethanethiol dioxygenase OS=Mus musculus GN=Ado PE=1 SV=2;; (*TAIR) AT2G42670.2 (e_value=7e-125) | Symbols: | Protein of unknown function (DUF1637) | chr2:17772004-17773700 REVERSE LENGTH=242;; (*ITAG) Solyc07g055150.2.1 (e_value=5e-168) genomic_reference:SL2.40ch07 gene_region:60606381-60611714 transcript_region:SL2.40ch07:60606381..60611714- go_terms:GO:0055114 functional_description:"Cupin RmlC-type (AHRD V1 **-- B6T568_MAIZE); contains Interpro domain(s) IPR012864 Protein of unknown function DUF1637 "; GO:0055114 NbS00026036g0011.1 protein AED:0.07 eAED:0.07 QI:73|0.87|0.77|1|0.87|0.88|9|407|731; (*GB) gi|297738630|emb|CBI27875.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=0.0) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G57035.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr5:23080743-23083819 FORWARD LENGTH=789;; (*ITAG) Solyc12g008990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00026036g0010.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0.5|0.33|3|0|671; (*GB) gi|280967730|gb|ACZ98536.1| (e_value=0.0) protein kinase [Malus x domestica];; (*SWP) sp|O48788|Y2267_ARATH (e_value=9e-160) Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1;; (*TAIR) AT2G26730.1 (e_value=7e-161) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658;; (*ITAG) Solyc03g111670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56365106-56368947 transcript_region:SL2.40ch03:56365106..56368947- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00000252g0005.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|7|373|239; (*GB) gi|255567666|ref|XP_002524812.1| (e_value=5e-127) endo-1,3-1,4-beta-d-glucanase, putative [Ricinus communis];; (*SWP) sp|Q9ZT66|E134_MAIZE (e_value=2e-48) Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1;; (*TAIR) AT3G23600.1 (e_value=4e-118) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8473833-8475655 FORWARD LENGTH=239;; (*ITAG) Solyc09g072900.2.1 (e_value=1e-146) genomic_reference:SL2.40ch09 gene_region:61085463-61090631 transcript_region:SL2.40ch09:61085463..61090631+ go_terms:GO:0005515 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0005515 NbS00023261g0003.1 protein AED:0.12 eAED:0.12 QI:882|1|1|1|1|1|2|375|266; (*ITAG) Solyc01g105830.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:85619534-85633587 transcript_region:SL2.40ch01:85619534..85633587+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease (AHRD V1 *-*- C9SFV0_VERA1); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00037532g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|389; (*GB) gi|224090379|ref|XP_002308978.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L868|E1311_ARATH (e_value=4e-98) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT2G26600.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase superfamily protein | chr2:11316727-11318215 FORWARD LENGTH=388;; (*ITAG) Solyc07g008150.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2853468-2858349 transcript_region:SL2.40ch07:2853468..2858349- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6SUM3_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00037532g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|120; (*GB) gi|356548479|ref|XP_003542629.1| (e_value=8e-36) PREDICTED: uncharacterized protein LOC100805802 [Glycine max];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=3e-31) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT5G20230.1 (e_value=2e-30) | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding protein | chr5:6826626-6827408 FORWARD LENGTH=196;; (*ITAG) Solyc07g008140.2.1 (e_value=1e-61) genomic_reference:SL2.40ch07 gene_region:2848064-2849548 transcript_region:SL2.40ch07:2848064..2849548- go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00039869g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|0.77|0.75|0.88|9|0|711; (*GB) gi|359492699|ref|XP_002280968.2| (e_value=6e-154) PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera];; (*SWP) sp|Q9SAV0|MB12_ARATH (e_value=2e-32) Myrosinase-binding protein-like At1g52040 OS=Arabidopsis thaliana GN=At1g52040 PE=2 SV=1;; (*TAIR) AT1G19715.1 (e_value=8e-139) | Symbols: | Mannose-binding lectin superfamily protein | chr1:6816934-6819432 REVERSE LENGTH=595;; (*ITAG) Solyc10g078600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59693842-59697055 transcript_region:SL2.40ch10:59693842..59697055- functional_description:"Myrosinase-binding protein (Fragment) (AHRD V1 *--- Q96342_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00039869g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0|1|1|1|3|0|212; (*GB) gi|14031051|gb|AAK52085.1| (e_value=2e-87) peroxidase [Nicotiana tabacum];; (*SWP) sp|Q96512|PER9_ARATH (e_value=8e-55) Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1;; (*TAIR) AT1G44970.1 (e_value=6e-56) | Symbols: | Peroxidase superfamily protein | chr1:17002237-17003563 FORWARD LENGTH=346;; (*ITAG) Solyc04g080760.2.1 (e_value=1e-70) genomic_reference:SL2.40ch04 gene_region:62450375-62452609 transcript_region:SL2.40ch04:62450375..62452609- go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q94IQ0_TOBAC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00039869g0015.1 protein AED:0.28 eAED:0.28 QI:0|1|0.83|1|0.8|0.66|6|616|259; (*GB) gi|224085774|ref|XP_002307692.1| (e_value=2e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|O94424|T2FB_SCHPO (e_value=2e-23) Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1;; (*TAIR) AT1G75510.1 (e_value=3e-113) | Symbols: | Transcription initiation factor IIF, beta subunit | chr1:28347254-28348629 REVERSE LENGTH=261;; (*ITAG) Solyc07g032090.2.1 (e_value=1e-157) genomic_reference:SL2.40ch07 gene_region:34650067-34660034 transcript_region:SL2.40ch07:34650067..34660034- go_terms:GO:0005515,GO:0016251 functional_description:"Transcription initiation factor IIF subunit beta (AHRD V1 **** B6K7X8_SCHJY); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit "; GO:0005515,GO:0016251 NbS00039869g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|102 NbS00020419g0004.1 protein AED:0.02 eAED:0.02 QI:345|0.75|0.88|1|0.87|0.77|9|236|570; (*GB) gi|28200786|emb|CAD45374.1| (e_value=0.0) potyviral helper component protease-interacting protein 1 [Solanum tuberosum subsp. andigenum];; (*TAIR) AT4G01270.1 (e_value=3e-97) | Symbols: | RING/U-box superfamily protein | chr4:532351-534891 FORWARD LENGTH=506;; (*ITAG) Solyc01g095090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78230365-78238510 transcript_region:SL2.40ch01:78230365..78238510- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RNF5 (AHRD V1 *--- RNF5_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00020419g0111.1 protein AED:0.08 eAED:0.08 QI:0|1|0.75|1|1|1|4|0|489 NbS00020419g0112.1 protein AED:0.27 eAED:0.27 QI:341|1|1|1|1|1|3|413|204 NbS00028675g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|107; (*ITAG) Solyc12g005690.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:371795-372187 transcript_region:SL2.40ch12:371795..372187- functional_description:"Unknown Protein (AHRD V1)"; NbS00005411g0019.1 protein AED:0.11 eAED:0.11 QI:75|0.83|0.85|1|0.83|0.85|7|384|291; (*GB) gi|225439356|ref|XP_002270858.1| (e_value=8e-86) PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial isoform 1 [Vitis vinifera];; (*SWP) sp|Q8IWL3|HSC20_HUMAN (e_value=3e-26) Iron-sulfur cluster co-chaperone protein HscB, mitochondrial OS=Homo sapiens GN=HSCB PE=1 SV=3;; (*TAIR) AT5G06410.1 (e_value=8e-73) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:1959719-1961132 REVERSE LENGTH=252;; (*ITAG) Solyc01g006860.2.1 (e_value=4e-129) genomic_reference:SL2.40ch01 gene_region:1422780-1427208 transcript_region:SL2.40ch01:1422780..1427208- go_terms:GO:0006457,GO:0031072 functional_description:"Co-chaperone HscB-like protein (AHRD V1 ***- A8IK66_CHLRE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00005411g0017.1 protein AED:0.09 eAED:0.11 QI:0|0|0|1|0.2|0.16|6|0|880; (*GB) gi|224123728|ref|XP_002319150.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G17980.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:5953596-5956745 FORWARD LENGTH=1049;; (*ITAG) Solyc01g065500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64136383-64139796 transcript_region:SL2.40ch01:64136383..64139796- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00005411g0018.1 protein AED:0.24 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|155; (*ITAG) Solyc01g017760.1.1 (e_value=7e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005411g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|597; (*GB) gi|8096269|dbj|BAA95789.1| (e_value=1e-10) KED [Nicotiana tabacum];; (*ITAG) Solyc10g081570.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61933486-61934769 transcript_region:SL2.40ch10:61933486..61934769- functional_description:"KED (AHRD V1 *-*- Q9LW95_TOBAC)"; NbS00031415g0001.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|172; (*GB) gi|225445170|ref|XP_002284107.1| (e_value=4e-89) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9N5K2|RPAB1_CAEEL (e_value=4e-49) DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=2 SV=1;; (*TAIR) AT3G22320.1 (e_value=3e-83) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=7e-92) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00031415g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|219810208|gb|ACL36352.1| (e_value=2e-27) fascilin-like arabinogalactan protein [Gossypium hirsutum];; (*SWP) sp|Q9SU13|FLA2_ARATH (e_value=7e-26) Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1;; (*TAIR) AT4G12730.1 (e_value=5e-27) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403;; (*ITAG) Solyc07g045440.1.1 (e_value=4e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55861244-55862473 transcript_region:SL2.40ch07:55861244..55862473- functional_description:"Fasciclin-like arabinogalactan protein 19 (AHRD V1 ***- A9XTM4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00055221g0007.1 protein AED:0.35 eAED:0.35 QI:151|1|1|1|1|1|2|269|148; (*GB) gi|400992|sp|P30956.1|RK28_TOBAC (e_value=2e-92) RecName: Full=50S ribosomal protein L28, chloroplastic; AltName: Full=CL28; Flags: Precursor;; (*SWP) sp|P30956|RK28_TOBAC (e_value=5e-94) 50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1;; (*TAIR) AT2G33450.1 (e_value=3e-60) | Symbols: | Ribosomal L28 family | chr2:14173620-14174380 FORWARD LENGTH=143;; (*ITAG) Solyc09g090410.2.1 (e_value=4e-86) genomic_reference:SL2.40ch09 gene_region:65281878-65286083 transcript_region:SL2.40ch09:65281878..65286083- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 ***- B6TFW5_MAIZE); contains Interpro domain(s) IPR001383 Ribosomal protein L28 "; GO:0005840 NbS00055221g0010.1 protein AED:0.11 eAED:0.11 QI:72|1|1|1|0.77|0.8|10|306|414; (*GB) gi|359487218|ref|XP_002272876.2| (e_value=0.0) PREDICTED: translation initiation factor eIF-2B subunit beta-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q54EY2|EI2BB_DICDI (e_value=3e-70) Translation initiation factor eIF-2B subunit beta OS=Dictyostelium discoideum GN=eif2b2 PE=3 SV=1;; (*TAIR) AT3G07300.2 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr3:2324967-2327380 REVERSE LENGTH=407;; (*ITAG) Solyc09g090400.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65275871-65281582 transcript_region:SL2.40ch09:65275871..65281582+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2B (AHRD V1 **** Q2UBN6_ASPOR); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0003743 NbS00055221g0003.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|433 NbS00003743g0005.1 protein AED:0.16 eAED:0.16 QI:75|1|1|1|0.5|0.4|5|408|407; (*GB) gi|350538939|ref|NP_001234878.1| (e_value=0.0) 4-amino-4-deoxychorismate lyase [Solanum lycopersicum];; (*SWP) sp|Q8L493|BCAL3_ARATH (e_value=2e-160) Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=At5g57850 PE=2 SV=1;; (*TAIR) AT5G57850.1 (e_value=2e-161) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:23435548-23437287 REVERSE LENGTH=373;; (*ITAG) Solyc11g071280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51893418-51896905 transcript_region:SL2.40ch11:51893418..51896905- go_terms:GO:0008696,GO:0004021 functional_description:"Branched-chain amino acid aminotransferase like protein (AHRD V1 **** Q0WW83_ARATH); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008696,GO:0004021 NbS00003743g0008.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.4|0.8|1|1|5|282|487; (*GB) gi|255551022|ref|XP_002516559.1| (e_value=3e-120) protein transporter, putative [Ricinus communis];; (*TAIR) AT4G32760.2 (e_value=3e-85) | Symbols: | ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=676;; (*ITAG) Solyc11g071270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51884449-51892282 transcript_region:SL2.40ch11:51884449..51892282- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00003743g0006.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0|0.66|1|1|3|0|106; (*GB) gi|359476368|ref|XP_002284083.2| (e_value=6e-20) PREDICTED: uncharacterized protein LOC100249280 isoform 1 [Vitis vinifera];; (*TAIR) AT4G32760.2 (e_value=6e-19) | Symbols: | ENTH/VHS/GAT family protein | chr4:15799376-15803832 FORWARD LENGTH=676;; (*ITAG) Solyc11g071270.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51884449-51892282 transcript_region:SL2.40ch11:51884449..51892282- go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00003743g0003.1 protein AED:0.26 eAED:0.26 QI:0|0.66|0.42|0.85|1|1|7|0|242; (*GB) gi|255570701|ref|XP_002526305.1| (e_value=1e-82) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=1e-57) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=4e-76) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=5e-94) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00003743g0030.1 protein AED:0.28 eAED:0.29 QI:0|0.66|0.6|0.7|0.77|0.8|10|0|404; (*GB) gi|359490986|ref|XP_002277437.2| (e_value=6e-128) PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Vitis vinifera];; (*SWP) sp|Q3ED68|Y1295_ARATH (e_value=9e-113) Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2;; (*TAIR) AT3G18210.2 (e_value=2e-119) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:6238264-6240396 REVERSE LENGTH=394;; (*ITAG) Solyc05g008610.2.1 (e_value=4e-137) genomic_reference:SL2.40ch05 gene_region:2921545-2927299 transcript_region:SL2.40ch05:2921545..2927299+ go_terms:GO:0016491,GO:0055114 functional_description:"2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 (AHRD V1 *--- OGFD2_XENTR); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0016491,GO:0055114 NbS00003743g0028.1 protein AED:0.21 eAED:0.37 QI:0|0.6|0.66|1|0.6|0.5|6|0|416; (*GB) gi|317106666|dbj|BAJ53169.1| (e_value=1e-164) JHL18I08.3 [Jatropha curcas];; (*SWP) sp|Q9LM66|XCP2_ARATH (e_value=4e-117) Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2;; (*TAIR) AT1G09850.1 (e_value=9e-154) | Symbols: XBCP3 | xylem bark cysteine peptidase 3 | chr1:3201848-3203875 FORWARD LENGTH=437;; (*ITAG) Solyc04g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62521368-62529607 transcript_region:SL2.40ch04:62521368..62529607- go_terms:GO:0006508,GO:0016020,GO:0008234,GO:0055114 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 *--- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0016020,GO:0008234,GO:0055114 NbS00005884g0005.1 protein AED:0.09 eAED:0.09 QI:144|1|0.87|1|1|1|8|191|438; (*GB) gi|171854671|dbj|BAG16525.1| (e_value=0.0) putative 4-methyl-5(b-hydroxyethyl)-thiazol monophosphate biosynthesis enzyme [Capsicum chinense];; (*SWP) sp|Q7TQ35|PARK7_MESAU (e_value=1e-35) Protein DJ-1 OS=Mesocricetus auratus GN=PARK7 PE=1 SV=1;; (*TAIR) AT1G53280.1 (e_value=0.0) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr1:19864942-19867341 REVERSE LENGTH=438;; (*ITAG) Solyc07g062610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62528306-62532784 transcript_region:SL2.40ch07:62528306..62532784+ go_terms:GO:0003723,GO:0051920 functional_description:"4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ (AHRD V1 *--- C8T4T4_KLEPR); contains Interpro domain(s) IPR006287 DJ-1 "; GO:0003723,GO:0051920 NbS00009544g0002.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0.5|1|0|0.25|4|324|163; (*GB) gi|225439199|ref|XP_002275569.1| (e_value=3e-21) PREDICTED: membrin-11 [Vitis vinifera];; (*SWP) sp|Q9FK28|MEM12_ARATH (e_value=4e-16) Membrin-12 OS=Arabidopsis thaliana GN=MEMB12 PE=2 SV=1;; (*TAIR) AT5G50440.1 (e_value=3e-17) | Symbols: MEMB12, ATMEMB12 | membrin 12 | chr5:20537644-20538452 REVERSE LENGTH=219;; (*ITAG) Solyc07g047720.2.1 (e_value=2e-32) genomic_reference:SL2.40ch07 gene_region:56257147-56260699 transcript_region:SL2.40ch07:56257147..56260699+ go_terms:GO:0005215,GO:0005484 functional_description:"Golgi SNAP receptor complex member bos1 (AHRD V1 **-* B0D8E0_LACBS); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0005215,GO:0005484 NbC25899735g0001.1 protein AED:0.11 eAED:0.42 QI:0|0|0|1|0|0|2|0|66 NbS00005465g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.2|0.33|0.83|0.2|0.33|6|0|446; (*GB) gi|15010541|gb|AAK74069.1| (e_value=0.0) flavin monoxygenase-like protein floozy [Petunia x hybrida];; (*SWP) sp|Q9LFM5|YUC4_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA4 OS=Arabidopsis thaliana GN=YUC4 PE=2 SV=1;; (*TAIR) AT5G11320.1 (e_value=0.0) | Symbols: YUC4 | Flavin-binding monooxygenase family protein | chr5:3611429-3613361 REVERSE LENGTH=411;; (*ITAG) Solyc06g065630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37403377-37405689 transcript_region:SL2.40ch06:37403377..37405689+ go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** B5GNT3_STRCL); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00040287g0001.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|382; (*GB) gi|225470070|ref|XP_002269458.1| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100259805 [Vitis vinifera];; (*TAIR) AT2G44730.1 (e_value=1e-32) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr2:18437447-18438565 REVERSE LENGTH=372;; (*ITAG) Solyc08g007170.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:1738242-1739468 transcript_region:SL2.40ch08:1738242..1739468+ functional_description:"Transcription factor (AHRD V1 *-*- D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; NbS00040287g0008.1 protein AED:0.15 eAED:0.22 QI:32|0.5|0|1|1|0.66|3|0|143; (*GB) gi|4098174|gb|AAD00240.1| (e_value=2e-57) PK11-C5 [Nicotiana tabacum];; (*SWP) sp|P0C5D6|SAPK3_ORYSJ (e_value=3e-40) Serine/threonine-protein kinase SAPK3 OS=Oryza sativa subsp. japonica GN=SAPK3 PE=1 SV=1;; (*TAIR) AT4G33950.2 (e_value=4e-38) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | Protein kinase superfamily protein | chr4:16272819-16274657 FORWARD LENGTH=314;; (*ITAG) Solyc08g077780.2.1 (e_value=3e-55) genomic_reference:SL2.40ch08 gene_region:58856672-58862420 transcript_region:SL2.40ch08:58856672..58862420+ go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00003324g0006.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|668; (*GB) gi|225452658|ref|XP_002276556.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FLD8|PP408_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1;; (*TAIR) AT5G39980.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:16001036-16003072 REVERSE LENGTH=678;; (*ITAG) Solyc02g087560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44542817-44544814 transcript_region:SL2.40ch02:44542817..44544814+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJE2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003324g0001.1 protein AED:0.09 eAED:0.09 QI:362|1|1|1|0.75|0.6|5|523|431; (*GB) gi|225452656|ref|XP_002282083.1| (e_value=0.0) PREDICTED: xylosyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q5QQ53|XYLT_DROPS (e_value=2e-19) Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1;; (*TAIR) AT5G15050.1 (e_value=0.0) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434;; (*ITAG) Solyc02g087550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44534583-44538659 transcript_region:SL2.40ch02:44534583..44538659- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 (AHRD V1 *--* GCNT4_DANRE); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00039855g0001.1 protein AED:0.12 eAED:0.12 QI:119|1|1|1|0|0|2|321|206; (*GB) gi|255636220|gb|ACU18451.1| (e_value=2e-34) unknown [Glycine max];; (*TAIR) AT5G56550.1 (e_value=2e-13) | Symbols: OXS3, ATOXS3 | oxidative stress 3 | chr5:22895847-22896502 REVERSE LENGTH=172;; (*ITAG) Solyc03g031890.2.1 (e_value=3e-56) genomic_reference:SL2.40ch03 gene_region:8630449-8632868 transcript_region:SL2.40ch03:8630449..8632868- functional_description:"Cold induced protein-like (AHRD V1 *--- Q94JH8_ORYSJ)"; NbS00008824g0012.1 protein AED:0.08 eAED:0.08 QI:115|1|1|1|0.66|0.57|7|431|212; (*GB) gi|147852293|emb|CAN80128.1| (e_value=2e-53) hypothetical protein VITISV_041592 [Vitis vinifera];; (*TAIR) AT1G20770.1 (e_value=2e-45) | Symbols: | unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7215345-7216648 REVERSE LENGTH=215;; (*ITAG) Solyc02g087940.2.1 (e_value=2e-53) genomic_reference:SL2.40ch02 gene_region:44757110-44760576 transcript_region:SL2.40ch02:44757110..44760576+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008824g0009.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|3|138|305; (*GB) gi|225452821|ref|XP_002283575.1| (e_value=4e-103) PREDICTED: myb-related protein 306 isoform 1 [Vitis vinifera];; (*SWP) sp|P81392|MYB06_ANTMA (e_value=3e-93) Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1;; (*TAIR) AT3G47600.1 (e_value=6e-92) | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain protein 94 | chr3:17539627-17541035 REVERSE LENGTH=333;; (*ITAG) Solyc02g087960.2.1 (e_value=5e-165) genomic_reference:SL2.40ch02 gene_region:44775431-44776995 transcript_region:SL2.40ch02:44775431..44776995+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9SN78_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00008824g0007.1 protein AED:0.15 eAED:0.15 QI:413|0.66|0.85|1|0.66|0.42|7|186|758; (*GB) gi|296082919|emb|CBI22220.3| (e_value=7e-165) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G39785.1 (e_value=2e-124) | Symbols: | Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606;; (*ITAG) Solyc02g087950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44761065-44765009 transcript_region:SL2.40ch02:44761065..44765009- go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00021697g0001.1 protein AED:0.60 eAED:0.60 QI:0|0|0|1|1|1|2|0|113 NbS00021824g0006.1 protein AED:0.64 eAED:0.64 QI:79|0|0.5|0.5|0|0|2|17|20 NbS00008985g0019.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.7|1|0.55|0.7|10|372|607; (*GB) gi|255536971|ref|XP_002509552.1| (e_value=6e-38) Sister chromatid cohesion 1 protein, putative [Ricinus communis];; (*SWP) sp|Q9FQ20|SCC12_ARATH (e_value=4e-26) Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana GN=SYN2 PE=2 SV=2;; (*TAIR) AT5G40840.1 (e_value=5e-28) | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family protein | chr5:16359611-16363722 REVERSE LENGTH=809;; (*ITAG) Solyc02g093930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49192402-49198143 transcript_region:SL2.40ch02:49192402..49198143- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00008985g0017.1 protein AED:0.07 eAED:0.09 QI:0|0.75|0.4|1|0.75|0.8|5|0|835; (*GB) gi|147840488|emb|CAN68422.1| (e_value=0.0) hypothetical protein VITISV_018267 [Vitis vinifera];; (*SWP) sp|Q12955|ANK3_HUMAN (e_value=2e-26) Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3;; (*TAIR) AT5G14230.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). | chr5:4591883-4595775 FORWARD LENGTH=751;; (*ITAG) Solyc02g093950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49206284-49210872 transcript_region:SL2.40ch02:49206284..49210872- go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **** D7M616_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00008985g0014.1 protein AED:0.18 eAED:0.18 QI:201|1|0.75|1|0.33|0.75|4|0|483; (*GB) gi|356511824|ref|XP_003524622.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100781900 isoform 2 [Glycine max];; (*TAIR) AT4G14605.1 (e_value=0.0) | Symbols: | Mitochondrial transcription termination factor family protein | chr4:8378815-8380564 FORWARD LENGTH=493;; (*ITAG) Solyc02g093940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49202211-49205160 transcript_region:SL2.40ch02:49202211..49205160- functional_description:"mTERF domain-containing protein 1, mitochondrial (AHRD V1 *--- MTER1_HUMAN); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00008985g0012.1 protein AED:0.28 eAED:0.28 QI:0|0.7|0.63|0.90|1|1|11|26|366; (*GB) gi|225452159|ref|XP_002263731.1| (e_value=0.0) PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q8W575|CSN3_ARATH (e_value=2e-145) COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2;; (*TAIR) AT5G14250.1 (e_value=2e-146) | Symbols: COP13, CSN3, FUS11 | Proteasome component (PCI) domain protein | chr5:4597970-4600561 FORWARD LENGTH=429;; (*ITAG) Solyc02g093920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49186630-49191575 transcript_region:SL2.40ch02:49186630..49191575- go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 3 (AHRD V1 ***- B6TEU1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00008985g0005.1 protein AED:0.49 eAED:1.00 QI:0|0|0|0.66|1|1|3|0|65 NbS00008985g0117.1 protein AED:0.11 eAED:0.11 QI:0|1|0.9|1|1|1|10|629|725 NbS00008985g0104.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|290 NbS00008985g0115.1 protein AED:0.35 eAED:0.35 QI:0|0.85|0.87|1|0.71|0.75|8|505|314 NbS00008985g0123.1 protein AED:0.35 eAED:0.37 QI:607|0.37|0.44|1|0.75|0.77|9|0|334 NbS00008985g0119.1 protein AED:0.21 eAED:0.21 QI:199|0.71|0.62|1|0.85|0.87|8|0|419 NbS00008985g0101.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|1|1|3|0|165 NbS00008985g0216.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|0.5|0.66|3|0|713 NbS00008985g0220.1 protein AED:0.28 eAED:0.28 QI:102|1|1|1|1|1|7|368|249 NbS00008985g0218.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0.5|2|0|510 NbS00008985g0219.1 protein AED:0.33 eAED:0.33 QI:0|0.84|0.78|1|1|1|14|0|478 NbS00008985g0217.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|0|0|3|0|60 NbS00013978g0003.1 protein AED:0.19 eAED:0.19 QI:124|1|1|1|1|1|4|251|168; (*GB) gi|359490714|ref|XP_002276446.2| (e_value=1e-68) PREDICTED: probable RNA-binding protein EIF1AD-like [Vitis vinifera];; (*SWP) sp|Q5HZM1|EIF1A_XENLA (e_value=7e-18) Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1;; (*TAIR) AT2G40780.1 (e_value=8e-63) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:17021875-17022748 FORWARD LENGTH=171;; (*ITAG) Solyc05g052180.2.1 (e_value=4e-85) genomic_reference:SL2.40ch05 gene_region:61608062-61610738 transcript_region:SL2.40ch05:61608062..61610738- go_terms:GO:0005515 functional_description:"Translation initiation factor 1a (AHRD V1 *--- Q1HQA3_BOMMO); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0005515 NbS00012370g0001.1 protein AED:0.30 eAED:0.31 QI:300|0.75|0.76|0.96|0.91|0.92|25|0|952; (*GB) gi|350537227|ref|NP_001233774.1| (e_value=0.0) ethylene insensitive 5/7 [Solanum lycopersicum];; (*SWP) sp|Q9FQ04|XRN4_ARATH (e_value=0.0) 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1;; (*TAIR) AT1G54490.1 (e_value=0.0) | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947;; (*ITAG) Solyc04g049010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38313587-38355062 transcript_region:SL2.40ch04:38313587..38355062- go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 *-** A2ATK1_MOUSE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbS00012370g0006.1 protein AED:0.70 eAED:1.00 QI:0|0|0|0.66|0|0.33|3|0|72 NbS00019314g0003.1 protein AED:0.22 eAED:0.22 QI:178|0.5|0.66|1|0|0.33|3|221|495; (*GB) gi|359480173|ref|XP_003632411.1| (e_value=2e-170) PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FZ24|PPR4_ARATH (e_value=2e-130) Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1;; (*TAIR) AT1G02370.1 (e_value=2e-131) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:474516-476383 FORWARD LENGTH=537;; (*ITAG) Solyc01g079320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70904161-70906500 transcript_region:SL2.40ch01:70904161..70906500- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB79_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00019314g0008.1 protein AED:0.31 eAED:0.31 QI:3|0|0|1|1|1|2|0|434; (*GB) gi|255548417|ref|XP_002515265.1| (e_value=9e-161) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FZ24|PPR4_ARATH (e_value=8e-124) Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1;; (*TAIR) AT1G02370.1 (e_value=6e-125) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:474516-476383 FORWARD LENGTH=537;; (*ITAG) Solyc01g079320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70904161-70906500 transcript_region:SL2.40ch01:70904161..70906500- go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB79_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00053960g0007.1 protein AED:0.39 eAED:0.43 QI:0|1|0.5|1|1|1|2|0|103; (*GB) gi|357113631|ref|XP_003558605.1| (e_value=6e-51) PREDICTED: 30S ribosomal protein S17-like [Brachypodium distachyon];; (*SWP) sp|B1I1J7|RS17_DESAP (e_value=5e-28) 30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1;; (*TAIR) AT1G49400.1 (e_value=7e-50) | Symbols: emb1129 | Nucleic acid-binding, OB-fold-like protein | chr1:18283156-18283643 FORWARD LENGTH=116;; (*ITAG) Solyc12g009380.1.1 (e_value=3e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2671827-2673707 transcript_region:SL2.40ch12:2671827..2673707+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S17 (AHRD V1 ***- B4FMH4_MAIZE); contains Interpro domain(s) IPR019984 Ribosomal protein S17, bacterial-type "; GO:0005840 NbS00053960g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.77|0.6|0.9|1|1|10|381|391; (*GB) gi|255546842|ref|XP_002514479.1| (e_value=1e-48) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FWS3|C3H16_ARATH (e_value=2e-38) Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=At1g75340 PE=2 SV=2;; (*TAIR) AT1G75340.1 (e_value=1e-39) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:28269153-28271873 REVERSE LENGTH=435;; (*ITAG) Solyc12g009390.1.1 (e_value=4e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2674220-2680864 transcript_region:SL2.40ch12:2674220..2680864- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 16 (AHRD V1 *-*- C3H16_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00019193g0003.1 protein AED:0.02 eAED:0.02 QI:32|1|1|1|0|0.5|2|371|182; (*GB) gi|302143282|emb|CBI21843.3| (e_value=2e-53) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XGS0|TRXM_BRANA (e_value=1e-51) Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1;; (*TAIR) AT4G03520.1 (e_value=1e-48) | Symbols: ATHM2 | Thioredoxin superfamily protein | chr4:1562585-1564055 REVERSE LENGTH=186;; (*ITAG) Solyc10g008390.2.1 (e_value=1e-82) genomic_reference:SL2.40ch10 gene_region:2524682-2529183 transcript_region:SL2.40ch10:2524682..2529183+ go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- A7LNX7_9CARY); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00056389g0005.1 protein AED:0.10 eAED:0.10 QI:18|1|1|1|1|1|10|258|837; (*GB) gi|255570663|ref|XP_002526286.1| (e_value=0.0) nucleotide binding protein, putative [Ricinus communis];; (*SWP) sp|F4I1S7|ELP2_ARATH (e_value=0.0) Elongator complex protein 2 OS=Arabidopsis thaliana GN=ELP2 PE=1 SV=1;; (*TAIR) AT1G49540.1 (e_value=0.0) | Symbols: ELP2, AtELP2 | elongator protein 2 | chr1:18333767-18337382 REVERSE LENGTH=838;; (*ITAG) Solyc06g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2172458-2193332 transcript_region:SL2.40ch06:2172458..2193332+ go_terms:GO:0019901 functional_description:"Elongator complex protein 2 (AHRD V1 **-- B0X467_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0019901 NbS00008336g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|324; (*GB) gi|302142145|emb|CBI19348.3| (e_value=2e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2Y9|RAX3_ARATH (e_value=6e-76) Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1;; (*TAIR) AT3G49690.1 (e_value=5e-77) | Symbols: RAX3, MYB84, ATMYB84 | myb domain protein 84 | chr3:18427941-18429100 FORWARD LENGTH=310;; (*ITAG) Solyc04g077260.2.1 (e_value=5e-154) genomic_reference:SL2.40ch04 gene_region:59829131-59830896 transcript_region:SL2.40ch04:59829131..59830896+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9T066_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00008336g0001.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.33|1|1|3|0|176; (*ITAG) Solyc08g074530.1.1 (e_value=5e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:55801785-55807397 transcript_region:SL2.40ch08:55801785..55807397+ go_terms:GO:0006508 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J1_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00016551g0003.1 protein AED:0.45 eAED:0.45 QI:0|1|0.5|1|0|0|2|0|95; (*GB) gi|118483960|gb|ABK93868.1| (e_value=8e-45) unknown [Populus trichocarpa];; (*TAIR) AT3G29130.2 (e_value=1e-40) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function KxDL (InterPro:IPR019371). | chr3:11102546-11103847 REVERSE LENGTH=168;; (*ITAG) Solyc02g069820.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:34229131-34232684 transcript_region:SL2.40ch02:34229131..34232684- functional_description:"UPF0459 protein C19orf50 homolog (AHRD V1 ***- CS050_DANRE); contains Interpro domain(s) IPR019371 Domain of unknown function KxDL "; NbS00016551g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|255564359|ref|XP_002523176.1| (e_value=3e-39) Rhicadhesin receptor precursor, putative [Ricinus communis];; (*SWP) sp|Q6K5Q0|GL21_ORYSJ (e_value=5e-37) Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1;; (*TAIR) AT3G04200.1 (e_value=1e-30) | Symbols: | RmlC-like cupins superfamily protein | chr3:1103745-1104573 REVERSE LENGTH=227;; (*ITAG) Solyc10g078840.1.1 (e_value=6e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59852199-59853206 transcript_region:SL2.40ch10:59852199..59853206+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 3 (AHRD V1 ***- Q6JVN1_VITVI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00017750g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.88|1|1|1|18|0|650; (*GB) gi|193290710|gb|ACF17663.1| (e_value=0.0) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=0.0) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=0.0) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc08g082280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62279956-62289714 transcript_region:SL2.40ch08:62279956..62289714- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00023180g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|224082982|ref|XP_002306917.1| (e_value=4e-55) SAUR family protein [Populus trichocarpa];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=3e-14) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT1G75590.1 (e_value=4e-47) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28383250-28383714 REVERSE LENGTH=154;; (*ITAG) Solyc04g081250.1.1 (e_value=1e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:62854012-62854461 transcript_region:SL2.40ch04:62854012..62854461+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *-*- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00011995g0007.1 protein AED:0.11 eAED:0.11 QI:208|0.92|0.92|1|0.69|0.85|14|401|452; (*GB) gi|255540501|ref|XP_002511315.1| (e_value=0.0) thyroid hormone receptor interactor, putative [Ricinus communis];; (*SWP) sp|Q8H1F9|PCH2_ARATH (e_value=0.0) Pachytene checkpoint protein 2 homolog OS=Arabidopsis thaliana GN=At4g24710 PE=2 SV=1;; (*TAIR) AT4G24710.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12745752-12748995 REVERSE LENGTH=475;; (*ITAG) Solyc12g076350.1.1 (e_value=3e-110) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:55913150-55915071 transcript_region:SL2.40ch12:55913150..55915071- functional_description:"Thyroid receptor-interacting protein 13 (AHRD V1 ***- B6U6B8_MAIZE)"; NbS00025440g0004.1 protein AED:0.12 eAED:0.12 QI:68|0.9|1|1|0.9|0.90|11|475|402; (*GB) gi|225469268|ref|XP_002267661.1| (e_value=0.0) PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=0.0) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=0.0) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc05g054130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63235374-63242308 transcript_region:SL2.40ch05:63235374..63242308+ go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00048753g0001.1 protein AED:0.05 eAED:0.05 QI:0|0|0.5|1|1|1|2|357|319; (*GB) gi|225430862|ref|XP_002269182.1| (e_value=4e-158) PREDICTED: probable galacturonosyltransferase-like 2-like [Vitis vinifera];; (*SWP) sp|Q9S7G2|GATL2_ARATH (e_value=3e-151) Probable galacturonosyltransferase-like 2 OS=Arabidopsis thaliana GN=GATL2 PE=2 SV=1;; (*TAIR) AT3G50760.1 (e_value=3e-152) | Symbols: GATL2 | galacturonosyltransferase-like 2 | chr3:18868074-18869099 FORWARD LENGTH=341;; (*ITAG) Solyc02g089880.2.1 (e_value=3e-178) genomic_reference:SL2.40ch02 gene_region:46149036-46150509 transcript_region:SL2.40ch02:46149036..46150509+ go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00048753g0002.1 protein AED:0.36 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|230; (*GB) gi|68299223|emb|CAJ13712.1| (e_value=6e-129) putative zinc finger protein [Capsicum chinense];; (*SWP) sp|Q99942|RNF5_HUMAN (e_value=6e-30) E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1;; (*TAIR) AT2G23780.1 (e_value=2e-74) | Symbols: | RING/U-box superfamily protein | chr2:10123551-10124234 REVERSE LENGTH=227;; (*ITAG) Solyc02g089870.1.1 (e_value=3e-131) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:46144086-46144748 transcript_region:SL2.40ch02:46144086..46144748+ go_terms:GO:0008270 functional_description:"RING finger protein 5 (AHRD V1 **-- B6TLS1_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007103g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|533; (*GB) gi|225458768|ref|XP_002285105.1| (e_value=0.0) PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=6e-164) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT4G37320.1 (e_value=6e-162) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc04g078270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60632095-60634606 transcript_region:SL2.40ch04:60632095..60634606- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007103g0013.1 protein AED:0.28 eAED:0.28 QI:0|0|0.5|1|0|0.5|2|399|230; (*GB) gi|85068594|gb|ABC69377.1| (e_value=2e-97) CYP81B2v2 [Nicotiana tabacum];; (*SWP) sp|P93147|C81E1_GLYEC (e_value=6e-39) Isoflavone 2'-hydroxylase OS=Glycyrrhiza echinata GN=CYP81E1 PE=1 SV=2;; (*TAIR) AT4G37320.1 (e_value=4e-42) | Symbols: CYP81D5 | cytochrome P450, family 81, subfamily D, polypeptide 5 | chr4:17559742-17561690 REVERSE LENGTH=495;; (*ITAG) Solyc04g078290.2.1 (e_value=1e-95) genomic_reference:SL2.40ch04 gene_region:60642301-60645358 transcript_region:SL2.40ch04:60642301..60645358- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007103g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|73 NbS00038645g0002.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|322; (*GB) gi|255577577|ref|XP_002529666.1| (e_value=1e-149) Protease ecfE, putative [Ricinus communis];; (*SWP) sp|P73714|Y1821_SYNY3 (e_value=2e-54) Putative zinc metalloprotease slr1821 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1821 PE=3 SV=1;; (*TAIR) AT2G32480.1 (e_value=7e-142) | Symbols: ARASP | ARABIDOPSIS SERIN PROTEASE | chr2:13788679-13790022 REVERSE LENGTH=447;; (*ITAG) Solyc07g052290.1.1 (e_value=1e-179) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58104789-58106123 transcript_region:SL2.40ch07:58104789..58106123+ go_terms:GO:0008237 functional_description:"Membrane-associated zinc metalloprotease family protein expressed (AHRD V1 ***- Q84NY6_ORYSJ); contains Interpro domain(s) IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase "; GO:0008237 NbS00048487g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|225450561|ref|XP_002281846.1| (e_value=1e-40) PREDICTED: transcription factor bHLH149 [Vitis vinifera];; (*SWP) sp|O80482|BH149_ARATH (e_value=2e-29) Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1;; (*TAIR) AT1G09250.1 (e_value=1e-30) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:2989509-2990132 FORWARD LENGTH=207;; (*ITAG) Solyc01g100660.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:82403861-82404954 transcript_region:SL2.40ch01:82403861..82404954+ functional_description:"Transcription factor (AHRD V1 ***- D7L4N5_ARALY)"; NbS00034836g0005.1 protein AED:0.02 eAED:0.02 QI:39|1|1|1|1|1|2|294|499; (*GB) gi|255544572|ref|XP_002513347.1| (e_value=7e-167) (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis];; (*SWP) sp|O64899|C80B1_ESCCA (e_value=1e-120) (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1;; (*TAIR) AT2G45570.1 (e_value=3e-107) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc03g026130.2.1 (e_value=7e-162) genomic_reference:SL2.40ch03 gene_region:7920692-7922487 transcript_region:SL2.40ch03:7920692..7922487- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00034499g0012.1 protein AED:0.30 eAED:0.30 QI:24|0.72|0.66|1|0.72|0.75|12|666|575; (*GB) gi|302142043|emb|CBI19246.3| (e_value=1e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G24580.1 (e_value=5e-23) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=4e-98) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00018088g0007.1 protein AED:0.15 eAED:0.18 QI:0|0|0|0.83|0|0|6|0|424; (*GB) gi|255552339|ref|XP_002517214.1| (e_value=1e-23) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q9SBA7|STP8_ARATH (e_value=4e-21) Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2;; (*TAIR) AT5G26250.1 (e_value=3e-22) | Symbols: | Major facilitator superfamily protein | chr5:9196758-9198681 FORWARD LENGTH=507;; (*ITAG) Solyc04g051160.1.1 (e_value=1e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00003745g0008.1 protein AED:0.12 eAED:0.13 QI:0|0.61|0.57|1|0.69|0.71|14|354|1160; (*GB) gi|356534442|ref|XP_003535763.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100805723 [Glycine max];; (*SWP) sp|Q7LBC6|KDM3B_HUMAN (e_value=1e-33) Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2;; (*TAIR) AT4G00990.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr4:427035-431535 FORWARD LENGTH=840;; (*ITAG) Solyc04g049140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:38967716-38986680 transcript_region:SL2.40ch04:38967716..38986680- go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00003745g0009.1 protein AED:0.18 eAED:0.24 QI:0|0.4|0.5|1|0.6|0.66|6|0|746; (*GB) gi|225442541|ref|XP_002284183.1| (e_value=0.0) PREDICTED: VHS domain-containing protein At3g16270 [Vitis vinifera];; (*SWP) sp|Q9C5H4|Y3627_ARATH (e_value=0.0) VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1;; (*TAIR) AT3G16270.1 (e_value=0.0) | Symbols: | ENTH/VHS family protein | chr3:5513701-5516540 FORWARD LENGTH=690;; (*ITAG) Solyc04g047770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:36799316-36804243 transcript_region:SL2.40ch04:36799316..36804243+ go_terms:GO:0006886 functional_description:"VHS domain-containing protein At3g16270 (AHRD V1 **-- Y3627_ARATH); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886 NbS00000277g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|207; (*ITAG) Solyc06g083430.1.1 (e_value=7e-51) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:45132414-45133391 transcript_region:SL2.40ch06:45132414..45133391- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00000277g0007.1 protein AED:0.14 eAED:0.14 QI:290|0.95|0.91|1|0.72|0.73|23|0|1678; (*GB) gi|359480142|ref|XP_002269196.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267035 [Vitis vinifera];; (*TAIR) AT3G24870.1 (e_value=0.0) | Symbols: | Helicase/SANT-associated, DNA binding protein | chr3:9075237-9084278 REVERSE LENGTH=1907;; (*ITAG) Solyc06g083420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45115668-45130266 transcript_region:SL2.40ch06:45115668..45130266+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 **-- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00000277g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|293; (*GB) gi|255560135|ref|XP_002521085.1| (e_value=2e-20) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc06g083420.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45115668-45130266 transcript_region:SL2.40ch06:45115668..45130266+ go_terms:GO:0003677 functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 **-- Q9LRX3_ARATH); contains Interpro domain(s) IPR013999 HAS subgroup "; GO:0003677 NbS00028599g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|97 NbS00008995g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|695; (*GB) gi|147773454|emb|CAN66786.1| (e_value=1e-167) hypothetical protein VITISV_037767 [Vitis vinifera];; (*TAIR) AT5G59730.2 (e_value=2e-123) | Symbols: ATEXO70H7, EXO70H7 | exocyst subunit exo70 family protein H7 | chr5:24064096-24066004 REVERSE LENGTH=632;; (*ITAG) Solyc11g073010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53223896-53225800 transcript_region:SL2.40ch11:53223896..53225800- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00026654g0016.1 protein AED:0.05 eAED:0.05 QI:309|0.91|1|1|1|1|13|456|495; (*GB) gi|255546311|ref|XP_002514215.1| (e_value=0.0) ceramide glucosyltransferase, putative [Ricinus communis];; (*TAIR) AT2G19880.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:8581578-8585118 FORWARD LENGTH=519;; (*ITAG) Solyc12g008490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1892113-1901586 transcript_region:SL2.40ch12:1892113..1901586- functional_description:"Ceramide glucosyltransferase (AHRD V1 ***- Q946Y1_GOSAR)"; NbS00026654g0017.1 protein AED:0.25 eAED:0.25 QI:22|1|1|1|0.5|0.42|7|1339|131; (*GB) gi|255546305|ref|XP_002514212.1| (e_value=1e-74) transferase, transferring pentosyl groups, putative [Ricinus communis];; (*SWP) sp|P23796|RIT1_YEAST (e_value=7e-31) tRNA A64-2'-O-ribosylphosphate transferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RIT1 PE=1 SV=3;; (*TAIR) AT2G40570.2 (e_value=7e-71) | Symbols: | initiator tRNA phosphoribosyl transferase family protein | chr2:16941066-16942977 FORWARD LENGTH=462;; (*ITAG) Solyc12g008450.1.1 (e_value=9e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1870999-1874812 transcript_region:SL2.40ch12:1870999..1874812- go_terms:GO:0016763 functional_description:"tRNA A64-2&apos-O-ribosylphosphate transferase (AHRD V1 ***- B2VVT1_PYRTR); contains Interpro domain(s) IPR007306 Initiator tRNA phosphoribosyl transferase "; GO:0016763 NbS00026654g0012.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.33|1|1|3|0|157; (*GB) gi|225445092|ref|XP_002280434.1| (e_value=3e-53) PREDICTED: uncharacterized protein LOC100259546 [Vitis vinifera];; (*TAIR) AT3G21600.2 (e_value=3e-42) | Symbols: | Senescence/dehydration-associated protein-related | chr3:7607077-7608364 REVERSE LENGTH=299;; (*ITAG) Solyc12g008460.1.1 (e_value=1e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1876263-1882122 transcript_region:SL2.40ch12:1876263..1882122- functional_description:"Senescence-associated protein 12 (AHRD V1 ***- B6U1F2_MAIZE); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00026654g0015.1 protein AED:0.07 eAED:0.07 QI:152|0.75|0.8|1|0.25|0.6|5|135|146 NbS00017824g0009.1 protein AED:0.25 eAED:0.25 QI:175|1|0.8|1|0.75|0.6|5|673|148; (*GB) gi|351726353|ref|NP_001235332.1| (e_value=6e-106) uncharacterized protein LOC100305945 [Glycine max];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=1e-105) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G53300.4 (e_value=2e-106) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=3e-107) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00017824g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|7|63|693; (*GB) gi|225426022|ref|XP_002273571.1| (e_value=0.0) PREDICTED: crooked neck-like protein 1 [Vitis vinifera];; (*SWP) sp|Q9BZJ0|CRNL1_HUMAN (e_value=0.0) Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4;; (*TAIR) AT5G41770.1 (e_value=0.0) | Symbols: | crooked neck protein, putative / cell cycle protein, putative | chr5:16718021-16720936 FORWARD LENGTH=705;; (*ITAG) Solyc12g056080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47407415-47416435 transcript_region:SL2.40ch12:47407415..47416435+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-splicing factor CLF1 (AHRD V1 ***- C5JTS1_AJEDS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00017568g0007.1 protein AED:0.14 eAED:0.14 QI:134|0.84|0.85|1|0.76|0.74|27|6|1150; (*GB) gi|296082911|emb|CBI22212.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJL0|SMC4_ARATH (e_value=0.0) Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=2 SV=1;; (*TAIR) AT5G48600.2 (e_value=0.0) | Symbols: SMC3 | structural maintenance of chromosome 3 | chr5:19701908-19709091 FORWARD LENGTH=1244;; (*ITAG) Solyc02g087980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44789160-44798531 transcript_region:SL2.40ch02:44789160..44798531+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes protein 4 (AHRD V1 **-- D8TXU8_VOLCA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00017568g0008.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.33|1|1|3|0|65; (*ITAG) Solyc08g062700.2.1 (e_value=1e-18) genomic_reference:SL2.40ch08 gene_region:48997752-49017259 transcript_region:SL2.40ch08:48997752..49017259- go_terms:GO:0005634,GO:0006457 functional_description:"Peptidyl prolyl cis trans isomerase-like (AHRD V1 ***- Q5ZB85_ORYSJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005634,GO:0006457 NbS00045063g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.5|0.83|0.6|0.66|6|0|248; (*GB) gi|118486938|gb|ABK95302.1| (e_value=1e-132) unknown [Populus trichocarpa];; (*SWP) sp|Q8I5R7|SYP_PLAF7 (e_value=3e-60) Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1;; (*TAIR) AT3G62120.2 (e_value=3e-129) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001227-23003849 REVERSE LENGTH=530;; (*ITAG) Solyc06g068320.2.1 (e_value=8e-152) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00045063g0002.1 protein AED:0.16 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|255579242|ref|XP_002530467.1| (e_value=7e-73) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G15760.1 (e_value=1e-55) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr1:5425714-5426322 FORWARD LENGTH=202;; (*ITAG) Solyc06g068310.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38708779-38709360 transcript_region:SL2.40ch06:38708779..38709360+ functional_description:"Jp18 (AHRD V1 ***- Q8H6R4_PONTR); contains Interpro domain(s) IPR010993 Sterile alpha motif homology "; NbS00005006g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.6|1|0.5|0.4|5|0|666; (*GB) gi|359484783|ref|XP_002270833.2| (e_value=0.0) PREDICTED: two-component response regulator ARR12-like [Vitis vinifera];; (*SWP) sp|P62598|ARR12_ARATH (e_value=1e-116) Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2;; (*TAIR) AT2G25180.1 (e_value=9e-118) | Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596;; (*ITAG) Solyc07g005140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:162324-167069 transcript_region:SL2.40ch07:162324..167069+ go_terms:GO:0003700 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0003700 NbS00005006g0008.1 protein AED:0.27 eAED:0.27 QI:270|1|1|1|1|1|5|411|295; (*GB) gi|356548445|ref|XP_003542612.1| (e_value=5e-159) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max];; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=3e-64) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1 PE=2 SV=1;; (*TAIR) AT4G31020.1 (e_value=2e-159) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:15108832-15110079 REVERSE LENGTH=294;; (*ITAG) Solyc07g005130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:145544-151215 transcript_region:SL2.40ch07:145544..151215+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00005006g0010.1 protein AED:0.30 eAED:0.30 QI:203|0.4|0.83|1|0.4|0.33|6|490|269; (*GB) gi|224088242|ref|XP_002308386.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58200.2 (e_value=1e-66) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr5:23549605-23551972 FORWARD LENGTH=309;; (*ITAG) Solyc07g005120.2.1 (e_value=2e-143) genomic_reference:SL2.40ch07 gene_region:134733-140291 transcript_region:SL2.40ch07:134733..140291+ go_terms:GO:0016787 functional_description:"Metallophosphoesterase (AHRD V1 ***- C7QWI2_CYAP0); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0016787 NbS00017293g0010.1 protein AED:0.10 eAED:0.11 QI:252|1|1|1|0.8|0.90|11|392|437; (*GB) gi|225462932|ref|XP_002266329.1| (e_value=0.0) PREDICTED: dual specificity protein kinase pyk1 isoform 1 [Vitis vinifera];; (*SWP) sp|P18160|SPLA_DICDI (e_value=3e-49) Dual specificity protein kinase splA OS=Dictyostelium discoideum GN=splA PE=1 SV=3;; (*TAIR) AT1G14000.1 (e_value=0.0) | Symbols: VIK | VH1-interacting kinase | chr1:4797606-4800043 FORWARD LENGTH=438;; (*ITAG) Solyc05g013070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6165906-6171636 transcript_region:SL2.40ch05:6165906..6171636+ go_terms:GO:0004708 functional_description:"Kinase family protein (AHRD V1 **** D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004708 NbS00017293g0007.1 protein AED:0.26 eAED:0.26 QI:269|1|1|1|1|1|4|268|214; (*GB) gi|255562952|ref|XP_002522481.1| (e_value=2e-110) Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis];; (*SWP) sp|Q9D1D4|TMEDA_MOUSE (e_value=7e-23) Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1;; (*TAIR) AT1G26690.1 (e_value=8e-102) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:9224299-9225682 REVERSE LENGTH=214;; (*ITAG) Solyc05g013130.2.1 (e_value=1e-142) genomic_reference:SL2.40ch05 gene_region:6223649-6227060 transcript_region:SL2.40ch05:6223649..6227060- go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6U439_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00000255g0001.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|217; (*ITAG) Solyc02g091890.1.1 (e_value=8e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47692878-47695214 transcript_region:SL2.40ch02:47692878..47695214- functional_description:"MRNA complete cds clone RAFL24-22-E06 (AHRD V1 *-*- Q67YL8_ARATH)"; NbS00000255g0004.1 protein AED:0.49 eAED:0.51 QI:0|0|0|1|1|1|2|0|123 NbS00000255g0013.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.75|0.33|0.25|4|0|431; (*GB) gi|147766517|emb|CAN65403.1| (e_value=0.0) hypothetical protein VITISV_036314 [Vitis vinifera];; (*SWP) sp|O49543|NFS1_ARATH (e_value=1e-178) Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1;; (*TAIR) AT5G65720.1 (e_value=9e-180) | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen fixation S (NIFS)-like 1 | chr5:26296349-26297710 FORWARD LENGTH=453;; (*ITAG) Solyc02g091900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47696576-47698280 transcript_region:SL2.40ch02:47696576..47698280+ go_terms:GO:0031071 functional_description:"Cysteine desulfurase (AHRD V1 **** B6T4S0_MAIZE); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0031071 NbS00007668g0012.1 protein AED:0.18 eAED:0.21 QI:6|0.90|0.91|1|1|1|12|641|608; (*GB) gi|171986594|gb|ACB59277.1| (e_value=9e-136) ARID/BRIGHT DNA binding domain containing protein [Lotus japonicus];; (*SWP) sp|Q0WNR6|ARID5_ARATH (e_value=3e-119) AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=2 SV=1;; (*TAIR) AT1G76510.2 (e_value=2e-120) | Symbols: | ARID/BRIGHT DNA-binding domain-containing protein | chr1:28708927-28712498 REVERSE LENGTH=434;; (*ITAG) Solyc04g082820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63943159-63954735 transcript_region:SL2.40ch04:63943159..63954735- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein (AHRD V1 *-*- D7KTU4_ARALY); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00007668g0017.1 protein AED:0.65 eAED:0.65 QI:0|0|0.33|0.33|1|1|3|0|84 NbS00007668g0015.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|97; (*GB) gi|225457662|ref|XP_002275896.1| (e_value=6e-55) PREDICTED: uncharacterized protein LOC100259899 isoform 1 [Vitis vinifera];; (*TAIR) AT2G33585.1 (e_value=1e-45) | Symbols: | unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14223403-14224167 REVERSE LENGTH=193;; (*ITAG) Solyc04g082800.2.1 (e_value=4e-57) genomic_reference:SL2.40ch04 gene_region:63934734-63935589 transcript_region:SL2.40ch04:63934734..63935589+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007668g0018.1 protein AED:0.31 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|271; (*GB) gi|255539338|ref|XP_002510734.1| (e_value=4e-44) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=1e-34) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT1G76500.1 (e_value=1e-37) | Symbols: SOB3, AHL29 | Predicted AT-hook DNA-binding family protein | chr1:28705532-28706440 FORWARD LENGTH=302;; (*ITAG) Solyc04g082810.2.1 (e_value=1e-48) genomic_reference:SL2.40ch04 gene_region:63940809-63941997 transcript_region:SL2.40ch04:63940809..63941997+ go_terms:GO:0003680,GO:0003690 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680,GO:0003690 NbS00042475g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|225453712|ref|XP_002271138.1| (e_value=5e-51) PREDICTED: BON1-associated protein 2-like [Vitis vinifera];; (*SWP) sp|Q58FX0|BAP2_ARATH (e_value=1e-28) BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1;; (*TAIR) AT2G45760.1 (e_value=1e-29) | Symbols: BAP2, BAL | BON association protein 2 | chr2:18847125-18847748 REVERSE LENGTH=207;; (*ITAG) Solyc01g091590.2.1 (e_value=7e-79) genomic_reference:SL2.40ch01 gene_region:76943808-76944592 transcript_region:SL2.40ch01:76943808..76944592+ go_terms:GO:0005515,GO:0005543 functional_description:"SRC2 protein (AHRD V1 ***- A7XAJ8_9CONI); contains Interpro domain(s) IPR000008 C2 calcium-dependent membrane targeting "; GO:0005515,GO:0005543 NbS00007000g0003.1 protein AED:0.04 eAED:0.04 QI:125|1|1|1|1|1|6|106|172; (*GB) gi|224097770|ref|XP_002311072.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10405.1 (e_value=6e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3233978-3235118 REVERSE LENGTH=212;; (*ITAG) Solyc05g055550.2.1 (e_value=7e-93) genomic_reference:SL2.40ch05 gene_region:64293196-64296760 transcript_region:SL2.40ch05:64293196..64296760- functional_description:"Chromosome 07 contig 1 DNA sequence (AHRD V1 ***- Q015I8_OSTTA)"; NbS00026032g0002.1 protein AED:0.00 eAED:0.00 QI:693|1|1|1|0|0|2|97|38 NbS00026032g0001.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0|0|2|0|79; (*ITAG) Solyc02g083000.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41164537-41165394 transcript_region:SL2.40ch02:41164537..41165394+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00000987g0002.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|3|0|221; (*GB) gi|115805|sp|P27495.1|CB24_TOBAC (e_value=2e-118) RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic; AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags: Precursor;; (*SWP) sp|P27495|CB24_TOBAC (e_value=5e-120) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=4e-106) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=8e-118) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00000987g0013.1 protein AED:0.24 eAED:0.24 QI:0|0.72|0.41|0.91|0.81|0.83|12|0|838; (*GB) gi|359483606|ref|XP_002271969.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera];; (*TAIR) AT1G29370.1 (e_value=3e-128) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc03g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:525181-537611 transcript_region:SL2.40ch03:525181..537611+ functional_description:"Genomic DNA chromosome 5 P1 clone MPL12 (AHRD V1 *--- Q9FL24_ARATH); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00000987g0004.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|3036948|dbj|BAA25392.1| (e_value=0.0) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27492|CB21_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=5e-173) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00057664g0002.1 protein AED:0.11 eAED:0.16 QI:69|0.5|0.33|0.88|1|1|9|0|420; (*GB) gi|3914394|sp|Q42908.1|PMGI_MESCR (e_value=0.0) RecName: Full=2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Short=BPG-independent PGAM; Short=Phosphoglyceromutase; AltName: Full=PGAM-I;; (*SWP) sp|Q42908|PMGI_MESCR (e_value=0.0) 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1;; (*TAIR) AT3G08590.2 (e_value=0.0) | Symbols: | Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent | chr3:2608683-2611237 REVERSE LENGTH=560;; (*ITAG) Solyc07g044840.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:55217173-55222925 transcript_region:SL2.40ch07:55217173..55222925+ go_terms:GO:0008830,GO:0004619 functional_description:"2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 **** B9S1V6_RICCO); contains Interpro domain(s) IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent "; GO:0008830,GO:0004619 NbS00015196g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|504; (*GB) gi|255545442|ref|XP_002513781.1| (e_value=0.0) Nodulation signaling pathway 2 protein, putative [Ricinus communis];; (*SWP) sp|Q5NE24|NSP2_MEDTR (e_value=0.0) Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1;; (*TAIR) AT4G08250.1 (e_value=2e-152) | Symbols: | GRAS family transcription factor | chr4:5196787-5198238 FORWARD LENGTH=483;; (*ITAG) Solyc11g013150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6017978-6019441 transcript_region:SL2.40ch11:6017978..6019441+ functional_description:"GRAS family transcription factor (AHRD V1 **-- B9H7C5_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00018241g0014.1 protein AED:0.31 eAED:0.32 QI:37|0.12|0.22|0.77|0.37|0.55|9|0|983; (*GB) gi|356538883|ref|XP_003537930.1| (e_value=0.0) PREDICTED: flowering time control protein FPA-like [Glycine max];; (*SWP) sp|Q8LPQ9|FPA_ARATH (e_value=4e-151) Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2;; (*TAIR) AT2G43410.4 (e_value=3e-152) | Symbols: FPA | RNA binding | chr2:18026397-18030989 REVERSE LENGTH=901;; (*ITAG) Solyc06g053320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32552462-32563008 transcript_region:SL2.40ch06:32552462..32563008+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- Q08212_DROME); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal "; GO:0003676,GO:0000166 NbS00008462g0009.1 protein AED:0.00 eAED:0.00 QI:187|1|1|1|0.33|0.25|4|210|129; (*GB) gi|225441927|ref|XP_002284555.1| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100265785 isoform 2 [Vitis vinifera];; (*TAIR) AT5G04000.1 (e_value=3e-25) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1079305-1079732 REVERSE LENGTH=116;; (*ITAG) Solyc04g016420.2.1 (e_value=3e-61) genomic_reference:SL2.40ch04 gene_region:7227070-7229696 transcript_region:SL2.40ch04:7227070..7229696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008462g0003.1 protein AED:0.02 eAED:0.02 QI:86|0.75|0.8|1|0|0.2|5|1190|246; (*GB) gi|224814374|gb|ACN65408.1| (e_value=1e-127) cytokinin oxidase/dehydrogenase 1 [Solanum tuberosum];; (*SWP) sp|O22213|CKX1_ARATH (e_value=4e-82) Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1;; (*TAIR) AT2G41510.1 (e_value=3e-83) | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314626-17316861 FORWARD LENGTH=575;; (*ITAG) Solyc04g016430.2.1 (e_value=2e-129) genomic_reference:SL2.40ch04 gene_region:7229849-7232636 transcript_region:SL2.40ch04:7229849..7232636- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 **** C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00008462g0013.1 protein AED:0.09 eAED:0.11 QI:0|0.84|0.57|1|0.84|0.78|14|762|1433; (*GB) gi|296087054|emb|CBI33381.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54IP0|DNJC7_DICDI (e_value=1e-30) DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1;; (*TAIR) AT5G12430.1 (e_value=0.0) | Symbols: TPR16 | Heat shock protein DnaJ with tetratricopeptide repeat | chr5:4028475-4034086 REVERSE LENGTH=1165;; (*ITAG) Solyc04g016410.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7200714-7218394 transcript_region:SL2.40ch04:7200714..7218394- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00048064g0004.1 protein AED:0.37 eAED:0.69 QI:80|0|0|1|0.5|0.33|3|0|72; (*GB) gi|115452855|ref|NP_001050028.1| (e_value=2e-19) Os03g0334100 [Oryza sativa Japonica Group];; (*TAIR) AT2G38570.1 (e_value=1e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr2:16136854-16138417 REVERSE LENGTH=328;; (*ITAG) Solyc10g085690.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64112556-64116118 transcript_region:SL2.40ch10:64112556..64116118+ functional_description:"PRC-barrel domain protein (AHRD V1 *-*- B0CFL1_ACAM1); contains Interpro domain(s) IPR011033 PRC-barrel-like "; NbS00011660g0004.1 protein AED:0.26 eAED:0.26 QI:385|0.83|0.85|1|0.66|0.57|7|0|615; (*GB) gi|224145323|ref|XP_002325602.1| (e_value=1e-113) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=4e-57) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT3G59690.1 (e_value=6e-72) | Symbols: IQD13 | IQ-domain 13 | chr3:22049572-22051479 FORWARD LENGTH=517;; (*ITAG) Solyc06g053450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32744659-32751251 transcript_region:SL2.40ch06:32744659..32751251+ go_terms:GO:0005516 functional_description:"IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00027420g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.66|1|1|3|0|107; (*ITAG) Solyc01g017760.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027420g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|2|0|106; (*SWP) sp|Q49KT9|YCF68_EUCGG (e_value=1e-15) Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1; NbS00004776g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.8|0.81|1|0.53|0.56|16|478|632; (*GB) gi|356576137|ref|XP_003556190.1| (e_value=0.0) PREDICTED: CCA tRNA nucleotidyltransferase, mitochondrial-like [Glycine max];; (*SWP) sp|Q9P4S5|CCA1_CANGA (e_value=7e-47) CCA tRNA nucleotidyltransferase, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CCA1 PE=1 SV=2;; (*TAIR) AT1G22660.1 (e_value=3e-114) | Symbols: | Polynucleotide adenylyltransferase family protein | chr1:8017410-8021538 FORWARD LENGTH=605;; (*ITAG) Solyc11g018770.1.1 (e_value=2e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9420136-9430649 transcript_region:SL2.40ch11:9420136..9430649+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *-*- CCA_LACPL); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00004776g0007.1 protein AED:0.02 eAED:0.02 QI:145|1|1|1|0|0.66|3|314|103; (*GB) gi|255566931|ref|XP_002524448.1| (e_value=5e-39) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g025690.2.1 (e_value=2e-57) genomic_reference:SL2.40ch03 gene_region:7496697-7497412 transcript_region:SL2.40ch03:7496697..7497412- functional_description:"Unknown Protein (AHRD V1)"; NbS00018768g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|0|0.5|2|0|82; (*GB) gi|356506510|ref|XP_003522024.1| (e_value=2e-23) PREDICTED: SPX domain-containing protein 3-like [Glycine max];; (*SWP) sp|Q7Y0F6|SPX5_ORYSJ (e_value=6e-17) SPX domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=SPX5 PE=2 SV=1;; (*TAIR) AT2G45130.1 (e_value=9e-16) | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:18606489-18607754 FORWARD LENGTH=245;; (*ITAG) Solyc01g090890.2.1 (e_value=9e-29) genomic_reference:SL2.40ch01 gene_region:76355582-76358021 transcript_region:SL2.40ch01:76355582..76358021+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00018768g0009.1 protein AED:0.21 eAED:0.77 QI:81|0|0|1|0|0|3|0|142 NbS00018768g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|0|0|3|0|60; (*GB) gi|359489546|ref|XP_003633934.1| (e_value=3e-19) PREDICTED: SPX domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|Q7XEY9|SPX3_ORYSJ (e_value=4e-17) SPX domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=SPX3 PE=2 SV=1;; (*TAIR) AT2G45130.1 (e_value=4e-18) | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:18606489-18607754 FORWARD LENGTH=245;; (*ITAG) Solyc01g090890.2.1 (e_value=6e-22) genomic_reference:SL2.40ch01 gene_region:76355582-76358021 transcript_region:SL2.40ch01:76355582..76358021+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00003005g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.85|1|0.66|0.42|7|697|163; (*GB) gi|350540670|ref|NP_001234634.1| (e_value=2e-67) autophagy 8f [Solanum lycopersicum];; (*SWP) sp|Q8VYK7|ATG8F_ARATH (e_value=1e-63) Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1;; (*TAIR) AT4G16520.2 (e_value=8e-65) | Symbols: ATG8F | Ubiquitin-like superfamily protein | chr4:9306882-9308113 REVERSE LENGTH=121;; (*ITAG) Solyc08g078820.2.1 (e_value=3e-69) genomic_reference:SL2.40ch08 gene_region:59697047-59702300 transcript_region:SL2.40ch08:59697047..59702300+ go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00003005g0011.1 protein AED:0.19 eAED:0.19 QI:102|1|1|1|1|1|4|78|147; (*ITAG) Solyc08g078840.2.1 (e_value=1e-59) genomic_reference:SL2.40ch08 gene_region:59707376-59710158 transcript_region:SL2.40ch08:59707376..59710158+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003005g0015.1 protein AED:0.13 eAED:0.13 QI:71|0|0|0.5|1|1|2|367|53; (*GB) gi|356514256|ref|XP_003525822.1| (e_value=2e-25) PREDICTED: uncharacterized protein LOC100815424 [Glycine max];; (*TAIR) AT4G16510.1 (e_value=9e-26) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr4:9302816-9304869 FORWARD LENGTH=232;; (*ITAG) Solyc08g007410.2.1 (e_value=5e-27) genomic_reference:SL2.40ch08 gene_region:1974157-1978006 transcript_region:SL2.40ch08:1974157..1978006- functional_description:"YbaK/prolyl-tRNA synthetase-like protein (AHRD V1 ***- A8JCE5_CHLRE); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00043420g0002.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.44|0.77|1|1|9|207|695; (*GB) gi|224060963|ref|XP_002300297.1| (e_value=5e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17000.1 (e_value=7e-64) | Symbols: | unknown protein; Has 2862 Blast hits to 2331 proteins in 349 species: Archae - 6; Bacteria - 408; Metazoa - 833; Fungi - 223; Plants - 134; Viruses - 7; Other Eukaryotes - 1251 (source: NCBI BLink). | chr4:9567046-9569913 REVERSE LENGTH=674;; (*ITAG) Solyc01g106540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86140439-86143977 transcript_region:SL2.40ch01:86140439..86143977- functional_description:"Unknown Protein (AHRD V1)"; NbS00043420g0009.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.75|1|1|4|0|266; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=7e-38) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106510.2.1 (e_value=8e-70) genomic_reference:SL2.40ch01 gene_region:86134498-86135961 transcript_region:SL2.40ch01:86134498..86135961- functional_description:"F-box protein family-like (AHRD V1 ***- Q6ZCS3_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00043420g0010.1 protein AED:0.28 eAED:0.44 QI:0|0|0|1|1|1|5|0|277; (*GB) gi|224139202|ref|XP_002323005.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4PCY0|CWC22_USTMA (e_value=4e-14) Pre-mRNA-splicing factor CWC22 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC22 PE=3 SV=1;; (*TAIR) AT1G80930.1 (e_value=7e-28) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc04g079920.2.1 (e_value=3e-29) genomic_reference:SL2.40ch04 gene_region:61838153-61844478 transcript_region:SL2.40ch04:61838153..61844478+ go_terms:GO:0005515,GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 ***- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0005515,GO:0003723 NbS00043420g0004.1 protein AED:0.62 eAED:0.76 QI:0|0|0|1|1|1|2|0|59 NbS00043420g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|1539|985; (*GB) gi|224105823|ref|XP_002313944.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LJM4|IKU2_ARATH (e_value=0.0) Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1;; (*TAIR) AT1G09970.1 (e_value=0.0) | Symbols: LRR XI-23, RLK7 | Leucine-rich receptor-like protein kinase family protein | chr1:3252408-3255428 FORWARD LENGTH=976;; (*ITAG) Solyc01g106500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86131135-86133728 transcript_region:SL2.40ch01:86131135..86133728+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00027898g0002.1 protein AED:0.15 eAED:0.21 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|225450557|ref|XP_002277523.1| (e_value=2e-71) PREDICTED: Werner Syndrome-like exonuclease-like [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=2e-15) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT4G13870.1 (e_value=1e-16) | Symbols: WRNEXO, ATWRNEXO, WEX, ATWEX | Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=285;; (*ITAG) Solyc01g100680.1.1 (e_value=4e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:82418305-82418913 transcript_region:SL2.40ch01:82418305..82418913+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00034752g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|3|0|485; (*GB) gi|255572597|ref|XP_002527232.1| (e_value=2e-141) kinase, putative [Ricinus communis];; (*SWP) sp|Q9LXA5|LRK91_ARATH (e_value=1e-128) L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1;; (*TAIR) AT5G10530.1 (e_value=7e-130) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr5:3324978-3326933 REVERSE LENGTH=651;; (*ITAG) Solyc03g043710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:11197028-11198971 transcript_region:SL2.40ch03:11197028..11198971- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-*- Q9LSL5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00038076g0004.1 protein AED:0.35 eAED:0.35 QI:511|0.75|0.69|0.92|0.75|0.76|13|0|413; (*GB) gi|225443668|ref|XP_002263226.1| (e_value=0.0) PREDICTED: dual specificity protein kinase shkB [Vitis vinifera];; (*SWP) sp|Q54TM7|DRKD_DICDI (e_value=3e-42) Probable serine/threonine-protein kinase drkD OS=Dictyostelium discoideum GN=drkD PE=2 SV=1;; (*TAIR) AT4G18950.1 (e_value=0.0) | Symbols: | Integrin-linked protein kinase family | chr4:10375685-10378129 FORWARD LENGTH=459;; (*ITAG) Solyc02g071740.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35686760-35693727 transcript_region:SL2.40ch02:35686760..35693727- go_terms:GO:0004713,GO:0051219 functional_description:"Protein-tyrosine kinase 6 (AHRD V1 **** PTK6_MOUSE); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0004713,GO:0051219 NbS00060091g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.25|0.75|0.66|0.75|4|0|388; (*GB) gi|255539006|ref|XP_002510568.1| (e_value=1e-38) hypothetical protein RCOM_1598630 [Ricinus communis];; (*TAIR) AT1G01150.1 (e_value=1e-18) | Symbols: | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr1:70115-71998 REVERSE LENGTH=345;; (*ITAG) Solyc07g056120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61307086-61310133 transcript_region:SL2.40ch07:61307086..61310133+ go_terms:GO:0003677,GO:0008270,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9LZR1_ARATH); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677,GO:0008270,GO:0045449 NbS00061435g0002.1 protein AED:0.13 eAED:0.45 QI:0|0|0|1|0|0|3|0|155; (*ITAG) Solyc07g041100.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49145538-49146146 transcript_region:SL2.40ch07:49145538..49146146+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057930g0004.1 protein AED:0.17 eAED:0.17 QI:207|0.87|0.88|1|0.87|0.77|9|488|361; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=0.0) EBP1 [Solanum tuberosum];; (*SWP) sp|P50580|PA2G4_MOUSE (e_value=7e-88) Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3;; (*TAIR) AT3G51800.3 (e_value=2e-175) | Symbols: ATG2 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385;; (*ITAG) Solyc06g082090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44317047-44320702 transcript_region:SL2.40ch06:44317047..44320702+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00036627g0007.1 protein AED:0.06 eAED:0.06 QI:309|0.84|0.78|1|0.69|0.78|14|470|578; (*GB) gi|359478816|ref|XP_002283762.2| (e_value=2e-101) PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera];; (*SWP) sp|O08795|GLU2B_MOUSE (e_value=2e-34) Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1;; (*TAIR) AT5G56360.1 (e_value=1e-73) | Symbols: PSL4 | calmodulin-binding protein | chr5:22823586-22827950 REVERSE LENGTH=647;; (*ITAG) Solyc12g099660.1.1 (e_value=6e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65054811-65063399 transcript_region:SL2.40ch12:65054811..65063399+ go_terms:GO:0005515 functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B6K4H4_SCHJY); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0005515 NbS00016786g0004.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.44|0.77|1|1|9|477|257; (*GB) gi|147852293|emb|CAN80128.1| (e_value=3e-57) hypothetical protein VITISV_041592 [Vitis vinifera];; (*TAIR) AT1G20770.1 (e_value=2e-50) | Symbols: | unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7215345-7216648 REVERSE LENGTH=215;; (*ITAG) Solyc02g087940.2.1 (e_value=1e-50) genomic_reference:SL2.40ch02 gene_region:44757110-44760576 transcript_region:SL2.40ch02:44757110..44760576+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016786g0007.1 protein AED:0.12 eAED:0.12 QI:514|1|1|1|0.8|0.66|6|75|740; (*GB) gi|225452825|ref|XP_002278235.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268097 [Vitis vinifera];; (*TAIR) AT5G39785.1 (e_value=2e-134) | Symbols: | Protein of unknown function (DUF1666) | chr5:15929257-15932215 FORWARD LENGTH=606;; (*ITAG) Solyc02g087950.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44761065-44765009 transcript_region:SL2.40ch02:44761065..44765009- go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00040838g0018.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|0.5|2|228|58 NbS00040838g0022.1 protein AED:0.25 eAED:0.29 QI:0|1|0.5|1|0.8|0.66|6|0|908; (*GB) gi|255549230|ref|XP_002515669.1| (e_value=2e-38) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g096800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52599162-52609670 transcript_region:SL2.40ch03:52599162..52609670+ functional_description:"At5g24290-like protein (Fragment) (AHRD V1 *-*- Q45H28_ARALY); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00040838g0025.1 protein AED:0.17 eAED:0.17 QI:0|0.4|0.33|0.66|0.6|0.83|6|0|337; (*GB) gi|255557921|ref|XP_002519989.1| (e_value=2e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G22810.1 (e_value=1e-13) | Symbols: | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region | chr3:8068595-8071559 FORWARD LENGTH=472;; (*ITAG) Solyc06g072940.1.1 (e_value=3e-123) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41350630-41352642 transcript_region:SL2.40ch06:41350630..41352642+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; NbS00040838g0024.1 protein AED:0.23 eAED:0.23 QI:0|0.88|0.8|1|0.66|0.8|10|697|348; (*GB) gi|297742494|emb|CBI34643.3| (e_value=3e-171) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54IK2|TM120_DICDI (e_value=1e-29) Transmembrane protein 120 homolog OS=Dictyostelium discoideum GN=tmem120 PE=3 SV=1;; (*TAIR) AT4G10430.3 (e_value=4e-147) | Symbols: | TMPIT-like protein | chr4:6455110-6457996 REVERSE LENGTH=347;; (*ITAG) Solyc03g096810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52611236-52615785 transcript_region:SL2.40ch03:52611236..52615785- go_terms:GO:0005515 functional_description:"Transmembrane protein 120A (AHRD V1 ***- B5XCP1_SALSA); contains Interpro domain(s) IPR012926 TMPIT-like "; GO:0005515 NbS00040838g0026.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.4|1|0.75|0.6|5|0|383; (*GB) gi|225423929|ref|XP_002278978.1| (e_value=1e-171) PREDICTED: aluminum-activated malate transporter 4 [Vitis vinifera];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=5e-142) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=4e-143) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc03g096820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52622191-52628259 transcript_region:SL2.40ch03:52622191..52628259- go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00040838g0027.1 protein AED:0.42 eAED:0.42 QI:0|0.5|0|1|0.5|0.33|3|0|208; (*GB) gi|255576491|ref|XP_002529137.1| (e_value=1e-59) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=8e-54) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=6e-55) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc03g096820.2.1 (e_value=6e-99) genomic_reference:SL2.40ch03 gene_region:52622191-52628259 transcript_region:SL2.40ch03:52622191..52628259- go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00040838g0001.1 protein AED:0.31 eAED:0.75 QI:0|0|0|1|1|1|2|0|116; (*GB) gi|224132530|ref|XP_002321339.1| (e_value=1e-55) multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9ZR72|AB1B_ARATH (e_value=6e-39) ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1;; (*TAIR) AT2G36910.1 (e_value=4e-40) | Symbols: ATPGP1, PGP1, ABCB1 | ATP binding cassette subfamily B1 | chr2:15502162-15507050 FORWARD LENGTH=1286;; (*ITAG) Solyc06g072960.1.1 (e_value=6e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00008568g0003.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.25|1|1|4|0|115; (*GB) gi|296088534|emb|CBI37525.3| (e_value=5e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42546|DPNP1_ARATH (e_value=4e-20) SAL1 phosphatase OS=Arabidopsis thaliana GN=SAL1 PE=1 SV=1;; (*TAIR) AT5G63980.1 (e_value=3e-21) | Symbols: SAL1, ALX8, ATSAL1, HOS2, FRY1, RON1 | Inositol monophosphatase family protein | chr5:25609840-25611802 FORWARD LENGTH=407;; (*ITAG) Solyc05g056490.2.1 (e_value=4e-23) genomic_reference:SL2.40ch05 gene_region:64907109-64913076 transcript_region:SL2.40ch05:64907109..64913076- go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase (AHRD V1 **** Q0WTT5_ARATH); contains Interpro domain(s) IPR006239 3(2),5 -bisphosphate nucleotidase HAL2 "; GO:0008441 NbS00008568g0005.1 protein AED:0.16 eAED:0.83 QI:0|0|0|1|0|0|3|0|96 NbS00043468g0005.1 protein AED:0.02 eAED:0.02 QI:177|1|0.83|1|1|1|6|263|545; (*GB) gi|359481663|ref|XP_002279742.2| (e_value=2e-98) PREDICTED: uncharacterized protein LOC100254532 [Vitis vinifera];; (*TAIR) AT2G40070.1 (e_value=1e-44) | Symbols: | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16728378-16731160 REVERSE LENGTH=607;; (*ITAG) Solyc09g014490.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:6111216-6115608 transcript_region:SL2.40ch09:6111216..6115608- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00021354g0001.1 protein AED:0.55 eAED:0.80 QI:0|0|0|0.8|1|1|5|0|69 NbS00035663g0011.1 protein AED:0.16 eAED:0.16 QI:318|0.75|0.55|1|0.75|0.66|9|0|591; (*GB) gi|224121506|ref|XP_002330717.1| (e_value=4e-151) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8H0M1|QORH_SPIOL (e_value=5e-148) Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1;; (*TAIR) AT4G13010.1 (e_value=6e-146) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr4:7600682-7602567 FORWARD LENGTH=329;; (*ITAG) Solyc09g059040.2.1 (e_value=9e-147) genomic_reference:SL2.40ch09 gene_region:48648503-48652059 transcript_region:SL2.40ch09:48648503..48652059- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 *-*- D3UKE0_LISSS); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00015988g0003.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.33|1|1|3|0|79; (*GB) gi|255552368|ref|XP_002517228.1| (e_value=5e-36) ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q06450|ATP5E_IPOBA (e_value=2e-36) ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2;; (*TAIR) AT1G51650.1 (e_value=5e-36) | Symbols: | ATP synthase epsilon chain, mitochondrial | chr1:19152680-19153641 FORWARD LENGTH=70;; (*ITAG) Solyc06g063220.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:36320862-36322674 transcript_region:SL2.40ch06:36320862..36322674- go_terms:GO:0048029,GO:0004331,GO:0003872 functional_description:"ATP synthase subunit epsilon mitochondrial (AHRD V1 ***- C1BV39_9MAXI); contains Interpro domain(s) IPR006721 ATPase, F1 complex, epsilon subunit, mitochondrial "; GO:0048029,GO:0004331,GO:0003872 NbS00015988g0008.1 protein AED:0.24 eAED:0.24 QI:0|0.88|0.8|1|0.88|0.9|10|0|426; (*GB) gi|4512263|dbj|BAA75232.1| (e_value=0.0) H+/Ca2+ exchanger 2 [Ipomoea nil];; (*SWP) sp|Q5KQN0|CAX2_ORYSJ (e_value=0.0) Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2;; (*TAIR) AT1G55730.2 (e_value=0.0) | Symbols: ATCAX5, CAX5 | cation exchanger 5 | chr1:20831387-20833941 REVERSE LENGTH=441;; (*ITAG) Solyc12g055750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47093237-47100681 transcript_region:SL2.40ch12:47093237..47100681- go_terms:GO:0055085,GO:0016021 functional_description:"Vacuolar cation/proton exchanger 2 (AHRD V1 ***- B6UEI1_MAIZE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0055085,GO:0016021 NbS00000584g0005.1 protein AED:0.15 eAED:0.10 QI:166|0.66|0.71|1|0.66|0.85|7|104|380; (*GB) gi|359479902|ref|XP_002267361.2| (e_value=3e-53) PREDICTED: uncharacterized protein LOC100260666 [Vitis vinifera];; (*TAIR) AT4G02480.1 (e_value=6e-36) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc06g084530.2.1 (e_value=3e-118) genomic_reference:SL2.40ch06 gene_region:45903153-45921388 transcript_region:SL2.40ch06:45903153..45921388+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit A-like 1 (AHRD V1 *--- KATL1_MOUSE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00000859g0007.1 protein AED:0.31 eAED:0.36 QI:0|0.66|0.25|1|0.33|0.25|4|0|325; (*GB) gi|224115898|ref|XP_002317152.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=1e-85) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=4e-108) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc02g081140.2.1 (e_value=2e-146) genomic_reference:SL2.40ch02 gene_region:39782470-39786000 transcript_region:SL2.40ch02:39782470..39786000- go_terms:GO:0043130 functional_description:"UBX domain-containing protein (AHRD V1 **-- D3B4P8_POLPA); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00000859g0010.1 protein AED:0.39 eAED:0.42 QI:0|0.73|0.87|0.93|0.66|0.68|16|313|493; (*GB) gi|302144089|emb|CBI23194.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P12617|DCMC_ANSAN (e_value=2e-65) Malonyl-CoA decarboxylase, mitochondrial OS=Anser anser anser GN=MLYCD PE=1 SV=2;; (*TAIR) AT4G04320.2 (e_value=1e-178) | Symbols: | malonyl-CoA decarboxylase family protein | chr4:2113565-2116525 FORWARD LENGTH=517;; (*ITAG) Solyc02g036300.2.1 (e_value=4e-45) genomic_reference:SL2.40ch02 gene_region:21196939-21199644 transcript_region:SL2.40ch02:21196939..21199644- go_terms:GO:0006633 functional_description:"Malonyl-CoA decarboxylase family protein (AHRD V1 ***- D7M166_ARALY); contains Interpro domain(s) IPR007956 Malonyl-CoA decarboxylase "; GO:0006633 NbS00022076g0007.1 protein AED:0.09 eAED:0.09 QI:435|1|1|1|0.9|0.90|11|608|618; (*GB) gi|225424380|ref|XP_002284904.1| (e_value=0.0) PREDICTED: microtubule-associated protein 70-2 [Vitis vinifera];; (*SWP) sp|Q9C9X0|MP701_ARATH (e_value=0.0) Microtubule-associated protein 70-1 OS=Arabidopsis thaliana GN=MAP70.1 PE=1 SV=1;; (*TAIR) AT1G68060.1 (e_value=0.0) | Symbols: ATMAP70-1, MAP70-1 | microtubule-associated proteins 70-1 | chr1:25511392-25514226 REVERSE LENGTH=622;; (*ITAG) Solyc01g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:232356-237013 transcript_region:SL2.40ch01:232356..237013- go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00022076g0115.1 protein AED:0.09 eAED:0.11 QI:0|0.14|0|1|0.71|0.62|8|0|1527 NbS00022076g0117.1 protein AED:0.08 eAED:0.09 QI:22|1|0.66|1|1|1|3|0|318 NbS00022076g0120.1 protein AED:0.10 eAED:0.10 QI:0|0.93|0.94|1|0.87|0.82|17|313|609 NbS00023574g0005.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0|0.75|0.66|0.75|4|0|403; (*GB) gi|225446789|ref|XP_002283205.1| (e_value=1e-95) PREDICTED: uncharacterized protein LOC100247266 [Vitis vinifera];; (*TAIR) AT1G06660.1 (e_value=1e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:2037461-2040148 REVERSE LENGTH=481;; (*ITAG) Solyc12g006270.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:783430-787716 transcript_region:SL2.40ch12:783430..787716- functional_description:"Dentin sialophosphoprotein-like protein (AHRD V1 *-*- Q8S7I6_ORYSJ)"; NbS00023574g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|65 NbS00023623g0003.1 protein AED:0.78 eAED:0.81 QI:0|0|0|0.4|1|1|5|0|172 NbS00023623g0004.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|195; (*GB) gi|113205247|gb|AAT39965.2| (e_value=6e-12) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00026245g0006.1 protein AED:0.09 eAED:0.10 QI:0|1|0.75|1|1|1|4|338|539; (*GB) gi|317016596|gb|ACT90640.2| (e_value=0.0) inducer of CBF expression [Camellia sinensis];; (*SWP) sp|Q9LSE2|ICE1_ARATH (e_value=5e-113) Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1;; (*TAIR) AT3G26744.4 (e_value=4e-114) | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494;; (*ITAG) Solyc06g068870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39083842-39089281 transcript_region:SL2.40ch06:39083842..39089281- go_terms:GO:0016563,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00026245g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.61|1|0.75|0.69|13|0|800; (*GB) gi|85069279|gb|ABC69711.1| (e_value=0.0) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=0.0) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=0.0) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc03g118290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61268685-61276156 transcript_region:SL2.40ch03:61268685..61276156+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 2 (AHRD V1 **** Q2LAJ3_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0003700 NbS00026245g0005.1 protein AED:0.59 eAED:1.00 QI:0|0|0|1|1|1|3|0|120 NbS00017436g0004.1 protein AED:0.58 eAED:0.71 QI:0|0|0|0.66|0|0.33|3|0|104; (*ITAG) Solyc02g078890.1.1 (e_value=2e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:38106532-38106726 transcript_region:SL2.40ch02:38106532..38106726+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017436g0002.1 protein AED:0.42 eAED:0.74 QI:0|0|0|1|1|1|2|0|74 NbS00027488g0004.1 protein AED:0.35 eAED:0.46 QI:0|1|0.6|1|1|1|5|0|228; (*GB) gi|302142194|emb|CBI19397.3| (e_value=3e-101) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q4R579|GPN2_MACFA (e_value=8e-49) GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1;; (*TAIR) AT5G22370.2 (e_value=1e-90) | Symbols: EMB1705, QQT1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7406587-7408509 FORWARD LENGTH=298;; (*ITAG) Solyc04g077790.2.1 (e_value=4e-109) genomic_reference:SL2.40ch04 gene_region:60280469-60284621 transcript_region:SL2.40ch04:60280469..60284621+ go_terms:GO:0005515,GO:0005524 functional_description:"GPN-loop GTPase 2 (AHRD V1 ***- A2A9E9_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515,GO:0005524 NbS00014003g0007.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|22128587|gb|AAM52339.1| (e_value=9e-16) fertility restorer [Petunia x hybrida];; (*ITAG) Solyc06g007740.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00014003g0006.1 protein AED:0.40 eAED:0.47 QI:0|0|0|1|0|0|3|0|91; (*GB) gi|22128591|gb|AAM52341.1| (e_value=2e-19) fertility restorer-like protein [Petunia x hybrida];; (*TAIR) AT1G12700.1 (e_value=1e-13) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00021650g0005.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.33|1|0.5|0.66|3|0|239; (*ITAG) Solyc10g080140.1.1 (e_value=4e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60847766-60849212 transcript_region:SL2.40ch10:60847766..60849212+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021650g0006.1 protein AED:0.41 eAED:0.41 QI:0|0.75|0.6|0.8|0.75|0.8|5|0|95; (*GB) gi|225450051|ref|XP_002276734.1| (e_value=8e-48) PREDICTED: cycloartenol-C-24-methyltransferase isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LM02|SMT1_ARATH (e_value=3e-46) Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1;; (*TAIR) AT5G13710.2 (e_value=2e-47) | Symbols: SMT1, CPH | sterol methyltransferase 1 | chr5:4424048-4426866 REVERSE LENGTH=336;; (*ITAG) Solyc10g080150.1.1 (e_value=7e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60851358-60855907 transcript_region:SL2.40ch10:60851358..60855907- go_terms:GO:0008152,GO:0006694 functional_description:"24-sterol C-methyltransferase (AHRD V1 ***- Q2QDF7_GOSHI); contains Interpro domain(s) IPR013705 Sterol methyltransferase C-terminal "; GO:0008152,GO:0006694 NbS00000882g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.88|0.7|1|0.77|0.8|10|583|1132; (*GB) gi|359487791|ref|XP_002280871.2| (e_value=7e-141) PREDICTED: uncharacterized protein LOC100259597 [Vitis vinifera];; (*TAIR) AT1G54920.2 (e_value=6e-74) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20470916-20474898 FORWARD LENGTH=890;; (*ITAG) Solyc01g098870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81009393-81018896 transcript_region:SL2.40ch01:81009393..81018896+ functional_description:"Nucleolar GTPase (AHRD V1 *-*- A6YTC8_CUCME)"; NbS00061918g0001.1 protein AED:0.37 eAED:0.36 QI:0|0|0|1|0|0|2|0|91; (*GB) gi|225282|prf||1211235T (e_value=2e-41) RNA polymerase beta;; (*SWP) sp|P06271|RPOB_TOBAC (e_value=5e-43) DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=6e-41) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc01g095950.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78832514-78833587 transcript_region:SL2.40ch01:78832514..78833587+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase subunit beta (AHRD V1 ***- B1NWE2_MANES); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00030369g0015.1 protein AED:0.15 eAED:0.15 QI:0|0.77|1|1|0.88|1|10|268|824; (*GB) gi|225459766|ref|XP_002284764.1| (e_value=0.0) PREDICTED: phospholipase D delta-like [Vitis vinifera];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc04g082000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63410821-63419107 transcript_region:SL2.40ch04:63410821..63419107+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00030369g0013.1 protein AED:0.08 eAED:0.19 QI:0|0.25|0.2|1|0.25|0.4|5|0|486; (*GB) gi|359495495|ref|XP_003635004.1| (e_value=5e-41) PREDICTED: putative F-box/LRR-repeat protein At5g02930-like [Vitis vinifera];; (*SWP) sp|Q9LV26|FBL45_ARATH (e_value=2e-30) Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2;; (*TAIR) AT3G18150.1 (e_value=1e-31) | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500 FORWARD LENGTH=456;; (*ITAG) Solyc04g057950.1.1 (e_value=1e-103) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00030369g0003.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|256860445|gb|ACV32157.1| (e_value=3e-101) chloroplast plastocyanin precursor [Nicotiana benthamiana];; (*SWP) sp|P17340|PLAS_SOLLC (e_value=9e-84) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G20340.1 (e_value=7e-68) | Symbols: DRT112, PETE2 | Cupredoxin superfamily protein | chr1:7042770-7043273 REVERSE LENGTH=167;; (*ITAG) Solyc04g082010.1.1 (e_value=6e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- go_terms:GO:0009055 functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "; GO:0009055 NbS00030369g0011.1 protein AED:0.45 eAED:0.48 QI:0|0.33|0|0.5|0.66|0.5|4|0|201; (*GB) gi|365222930|gb|AEW69817.1| (e_value=4e-99) Hop-interacting protein THI120 [Solanum lycopersicum];; (*TAIR) AT5G27280.1 (e_value=1e-67) | Symbols: | Zim17-type zinc finger protein | chr5:9617548-9618369 FORWARD LENGTH=212;; (*ITAG) Solyc04g082020.2.1 (e_value=1e-101) genomic_reference:SL2.40ch04 gene_region:63421329-63424627 transcript_region:SL2.40ch04:63421329..63424627- functional_description:"DNL zinc finger family protein (AHRD V1 **-- B6TGI7_MAIZE); contains Interpro domain(s) IPR007853 Zinc finger, Zim17-type "; NbS00034712g0003.1 protein AED:0.21 eAED:0.23 QI:0|0|0|0.66|1|1|3|0|139; (*GB) gi|255575239|ref|XP_002528523.1| (e_value=1e-25) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g082240.1.1 (e_value=4e-55) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:40517470-40517907 transcript_region:SL2.40ch02:40517470..40517907+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058356g0006.1 protein AED:0.08 eAED:0.09 QI:6|0.5|0.33|1|0.5|0.33|3|101|188; (*GB) gi|255546215|ref|XP_002514167.1| (e_value=2e-93) o-methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9C5D7|CAMT3_ARATH (e_value=2e-90) Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1;; (*TAIR) AT4G26220.1 (e_value=1e-91) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:13284179-13285146 FORWARD LENGTH=232;; (*ITAG) Solyc05g026330.1.1 (e_value=2e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40892670-40893409 transcript_region:SL2.40ch05:40892670..40893409- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A2PZD5_IPONI); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00044067g0002.1 protein AED:0.16 eAED:0.17 QI:0|1|0|1|0|0|2|0|130; (*SWP) sp|O49813|OLEE1_BETPN (e_value=5e-14) Olee1-like protein OS=Betula pendula PE=2 SV=1;; (*ITAG) Solyc02g076860.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:36558814-36560643 transcript_region:SL2.40ch02:36558814..36560643- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00019498g0015.1 protein AED:0.08 eAED:0.08 QI:0|0.6|0.5|1|0.6|0.66|6|0|374; (*GB) gi|255563450|ref|XP_002522727.1| (e_value=4e-141) Pectinesterase U1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FM79|PME62_ARATH (e_value=6e-128) Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1;; (*TAIR) AT5G55590.1 (e_value=5e-129) | Symbols: QRT1 | Pectin lyase-like superfamily protein | chr5:22519911-22521699 FORWARD LENGTH=380;; (*ITAG) Solyc07g065360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64378881-64381522 transcript_region:SL2.40ch07:64378881..64381522+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9S9Q8_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00019498g0011.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|379; (*GB) gi|350538565|ref|NP_001234349.1| (e_value=0.0) zinc transporter-like precursor [Solanum lycopersicum];; (*SWP) sp|Q852F6|ZIP2_ORYSJ (e_value=2e-124) Zinc transporter 2 OS=Oryza sativa subsp. japonica GN=ZIP2 PE=2 SV=1;; (*TAIR) AT1G55910.1 (e_value=6e-125) | Symbols: ZIP11 | zinc transporter 11 precursor | chr1:20906161-20907225 FORWARD LENGTH=326;; (*ITAG) Solyc07g065380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64388616-64391033 transcript_region:SL2.40ch07:64388616..64391033- go_terms:GO:0008324 functional_description:"Zinc transporter 2 (AHRD V1 **** B6UH65_MAIZE); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0008324 NbS00019498g0002.1 protein AED:0.24 eAED:0.24 QI:0|1|0.83|1|1|1|6|340|674; (*GB) gi|296089890|emb|CBI39709.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G55600.3 (e_value=0.0) | Symbols: | agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | chr5:22522232-22524796 REVERSE LENGTH=663;; (*ITAG) Solyc07g065370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64381656-64386573 transcript_region:SL2.40ch07:64381656..64386573- go_terms:GO:0003677,GO:0003723 functional_description:"Agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like (AHRD V1 *--- Q69J33_ORYSJ); contains Interpro domain(s) IPR008395 Agenet "; GO:0003677,GO:0003723 NbS00002336g0010.1 protein AED:0.40 eAED:0.40 QI:0|0.5|0.14|0.71|0.5|0.57|7|126|211; (*GB) gi|29289943|gb|AAO67719.1| (e_value=6e-107) sucrose synthase [Solanum tuberosum];; (*SWP) sp|O24301|SUS2_PEA (e_value=1e-82) Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1;; (*TAIR) AT4G02280.1 (e_value=2e-81) | Symbols: SUS3, ATSUS3 | sucrose synthase 3 | chr4:995166-998719 FORWARD LENGTH=809;; (*ITAG) Solyc09g098590.2.1 (e_value=4e-108) genomic_reference:SL2.40ch09 gene_region:67652867-67658231 transcript_region:SL2.40ch09:67652867..67658231+ go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q84T18_SOLTU); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria IPR000368 Sucrose synthase "; GO:0016157 NbS00002336g0012.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.77|1|1|1|9|85|494; (*GB) gi|350539021|ref|NP_001234882.1| (e_value=0.0) endo-1,4-beta-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|O81416|GUN17_ARATH (e_value=0.0) Endoglucanase 17 OS=Arabidopsis thaliana GN=At4g02290 PE=2 SV=1;; (*TAIR) AT4G02290.1 (e_value=0.0) | Symbols: AtGH9B13, GH9B13 | glycosyl hydrolase 9B13 | chr4:1002654-1005125 REVERSE LENGTH=516;; (*ITAG) Solyc09g075360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62584484-62587919 transcript_region:SL2.40ch09:62584484..62587919+ go_terms:GO:0008810 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00050956g0001.1 protein AED:0.22 eAED:0.23 QI:0|1|0.71|1|1|1|7|0|452; (*GB) gi|126567465|dbj|BAF48331.1| (e_value=0.0) putative yellow stripe-like protein [Nicotiana tabacum];; (*SWP) sp|Q2EF88|YSL3_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1;; (*TAIR) AT5G53550.2 (e_value=0.0) | Symbols: YSL3 | YELLOW STRIPE like 3 | chr5:21756081-21758776 FORWARD LENGTH=675;; (*ITAG) Solyc03g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46082668-46086918 transcript_region:SL2.40ch03:46082668..46086918- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00050956g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|255549238|ref|XP_002515673.1| (e_value=2e-148) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q2EF88|YSL3_ARATH (e_value=7e-139) Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1;; (*TAIR) AT5G53550.2 (e_value=5e-140) | Symbols: YSL3 | YELLOW STRIPE like 3 | chr5:21756081-21758776 FORWARD LENGTH=675;; (*ITAG) Solyc03g082620.2.1 (e_value=1e-142) genomic_reference:SL2.40ch03 gene_region:46082668-46086918 transcript_region:SL2.40ch03:46082668..46086918- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00003989g0103.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|110 NbS00003989g0109.1 protein AED:0.41 eAED:0.50 QI:0|0.33|0.28|1|0.66|0.71|7|82|205 NbS00003989g0111.1 protein AED:0.06 eAED:0.06 QI:152|1|0.5|1|0|0|2|0|48 NbS00003989g0110.1 protein AED:0.13 eAED:0.13 QI:60|0.25|0.6|0.8|0.25|0.2|5|605|98 NbS00010125g0016.1 protein AED:0.09 eAED:0.11 QI:322|0.8|0.72|1|0.8|0.81|11|0|890; (*GB) gi|359496145|ref|XP_002270350.2| (e_value=0.0) PREDICTED: phospholipase D delta-like [Vitis vinifera];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=0.0) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.2 (e_value=0.0) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16955774-16959875 REVERSE LENGTH=857;; (*ITAG) Solyc02g083340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41357264-41365434 transcript_region:SL2.40ch02:41357264..41365434- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00010125g0012.1 protein AED:0.13 eAED:0.13 QI:42|0.92|0.73|1|0.78|0.86|15|0|1865; (*GB) gi|225459758|ref|XP_002285900.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis vinifera];; (*SWP) sp|P18616|RPB1_ARATH (e_value=0.0) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=3;; (*TAIR) AT4G35800.1 (e_value=0.0) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839;; (*ITAG) Solyc02g083350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41367508-41376061 transcript_region:SL2.40ch02:41367508..41376061- go_terms:GO:0031625 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SXC0_RICCO); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0031625 NbS00010125g0009.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|118; (*GB) gi|24745601|dbj|BAC23030.1| (e_value=8e-17) ring H2 zinc finger [Solanum tuberosum];; (*ITAG) Solyc03g112340.1.1 (e_value=2e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00010125g0014.1 protein AED:0.33 eAED:0.54 QI:0|0|0|1|0|0|2|0|86; (*TAIR) AT1G21390.1 (e_value=1e-16) | Symbols: emb2170 | embryo defective 2170 | chr1:7489385-7490554 REVERSE LENGTH=248;; (*ITAG) Solyc06g059860.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:34148058-34150076 transcript_region:SL2.40ch06:34148058..34150076+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015795g0008.1 protein AED:0.12 eAED:0.13 QI:0|1|0.75|1|0.66|0.25|4|0|607; (*GB) gi|255587120|ref|XP_002534145.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LYW0|Y5325_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1;; (*TAIR) AT5G03250.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:774591-776855 FORWARD LENGTH=592;; (*ITAG) Solyc09g007820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1348239-1351133 transcript_region:SL2.40ch09:1348239..1351133+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00015795g0013.1 protein AED:0.57 eAED:0.63 QI:0|0|0|0.25|1|1|4|0|192 NbS00015795g0012.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|81 NbS00037325g0004.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|0.66|0.5|0.33|3|0|171; (*GB) gi|225446392|ref|XP_002274522.1| (e_value=7e-83) PREDICTED: O-acyltransferase WSD1 [Vitis vinifera];; (*TAIR) AT3G49190.1 (e_value=8e-19) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc12g010590.1.1 (e_value=3e-110) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3563160-3568207 transcript_region:SL2.40ch12:3563160..3568207+ go_terms:GO:0008152 functional_description:"O-acyltransferase WSD1 (AHRD V1 **-- WSD1_ARATH)"; GO:0008152 NbS00022236g0007.1 protein AED:0.39 eAED:0.39 QI:88|1|0.88|1|1|1|9|0|305; (*GB) gi|255582893|ref|XP_002532218.1| (e_value=2e-151) Tetratricopeptide repeat protein, putative [Ricinus communis];; (*SWP) sp|Q5BK48|TTC5_RAT (e_value=2e-50) Tetratricopeptide repeat protein 5 OS=Rattus norvegicus GN=Ttc5 PE=2 SV=1;; (*ITAG) Solyc05g008420.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022236g0004.1 protein AED:0.47 eAED:0.47 QI:0|1|0.5|1|1|1|4|0|93; (*GB) gi|297737733|emb|CBI26934.3| (e_value=4e-43) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g008420.2.1 (e_value=1e-52) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022236g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.8|0|0|5|0|215; (*GB) gi|157690102|gb|ABV65738.1| (e_value=8e-51) RNA polymerase beta'' subunit (chloroplast) [Gunnera manicata];; (*SWP) sp|Q2MIB0|RPOC2_SOLLC (e_value=3e-52) DNA-directed RNA polymerase subunit beta'' OS=Solanum lycopersicum GN=rpoC2 PE=3 SV=1;; (*ITAG) ATCG00170.1 (e_value=1e-46) | Symbols: RPOC2 | DNA-directed RNA polymerase family protein | chrC:15938-20068 REVERSE LENGTH=1376;; (*ITAG) Solyc10g011720.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:3978291-3978683 transcript_region:SL2.40ch10:3978291..3978683+ functional_description:"DNA-directed RNA polymerase subunit beta&apos&apos (AHRD V1 ***- D3WCH4_NEROL)"; NbS00038949g0003.1 protein AED:0.23 eAED:0.23 QI:277|0.88|1|1|0.77|0.7|10|190|361; (*GB) gi|225453064|ref|XP_002268977.1| (e_value=1e-115) PREDICTED: uncharacterized protein LOC100255283 [Vitis vinifera];; (*TAIR) AT1G10095.1 (e_value=4e-106) | Symbols: | Protein prenylyltransferase superfamily protein | chr1:3297478-3300353 REVERSE LENGTH=420;; (*ITAG) Solyc01g111410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89429434-89436218 transcript_region:SL2.40ch01:89429434..89436218+ go_terms:GO:0018346 functional_description:"Protein prenyltransferase alpha subunit repeat-containing protein 1 (AHRD V1 *-*- PTAR1_HUMAN); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0018346 NbC23584522g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|76; (*GB) gi|85068682|gb|ABC69421.1| (e_value=4e-39) CYP71D20v2 [Nicotiana tabacum];; (*SWP) sp|P93531|C71D7_SOLCH (e_value=6e-40) Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1;; (*TAIR) AT3G26230.1 (e_value=4e-28) | Symbols: CYP71B24 | cytochrome P450, family 71, subfamily B, polypeptide 24 | chr3:9598200-9599892 REVERSE LENGTH=498;; (*ITAG) Solyc01g008650.2.1 (e_value=6e-38) genomic_reference:SL2.40ch01 gene_region:2712022-2714463 transcript_region:SL2.40ch01:2712022..2714463- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009908g0001.1 protein AED:0.38 eAED:0.53 QI:0|-1|0|1|-1|1|1|0|68; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00009908g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0.5|2|160|103 NbS00044659g0013.1 protein AED:0.27 eAED:0.28 QI:0|0.75|0.82|1|0.62|0.64|17|930|384; (*GB) gi|356513159|ref|XP_003525281.1| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like [Glycine max];; (*SWP) sp|P42158|KC1D_ARATH (e_value=1e-141) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G28880.1 (e_value=9e-169) | Symbols: ckl3 | casein kinase I-like 3 | chr4:14251351-14254048 FORWARD LENGTH=415;; (*ITAG) Solyc08g066870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52951824-52960178 transcript_region:SL2.40ch08:52951824..52960178- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00044659g0014.1 protein AED:0.30 eAED:0.42 QI:0|0.37|0.22|1|0.25|0.11|9|0|355; (*GB) gi|296081861|emb|CBI20866.3| (e_value=3e-36) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g066860.2.1 (e_value=2e-80) genomic_reference:SL2.40ch08 gene_region:52945971-52948844 transcript_region:SL2.40ch08:52945971..52948844- go_terms:GO:0035091 functional_description:"Os02g0658033 protein (Fragment) (AHRD V1 *-*- C7IYY5_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00044659g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.87|1|1|1|8|2671|346; (*GB) gi|255550986|ref|XP_002516541.1| (e_value=8e-158) lactoylglutathione lyase, putative [Ricinus communis];; (*SWP) sp|Q8W593|LGUC_ARATH (e_value=4e-143) Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=2 SV=1;; (*TAIR) AT1G67280.1 (e_value=3e-144) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350;; (*ITAG) Solyc08g066850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52941333-52946188 transcript_region:SL2.40ch08:52941333..52946188+ go_terms:GO:0046872 functional_description:"Lactoylglutathione lyase (AHRD V1 ***- B6SSK1_MAIZE); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0046872 NbS00018084g0014.1 protein AED:0.13 eAED:0.14 QI:258|0.8|0.68|1|0.6|0.62|16|0|1782; (*GB) gi|296082099|emb|CBI21104.3| (e_value=5e-108) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8IRW8|TRR_DROME (e_value=1e-36) Histone-lysine N-methyltransferase trr OS=Drosophila melanogaster GN=trr PE=1 SV=2;; (*TAIR) AT4G27910.1 (e_value=1e-31) | Symbols: ATX4, SDG16 | SET domain protein 16 | chr4:13894694-13900256 FORWARD LENGTH=1027;; (*ITAG) Solyc08g041760.1.1 (e_value=3e-116) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:27016130-27017554 transcript_region:SL2.40ch08:27016130..27017554+ functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- A9RXF6_PHYPA)"; NbS00018084g0009.1 protein AED:0.06 eAED:0.19 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|357478453|ref|XP_003609512.1| (e_value=5e-13) hypothetical protein MTR_4g116500 [Medicago truncatula];; (*TAIR) AT5G35090.1 (e_value=4e-14) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:13358536-13359015 FORWARD LENGTH=159;; (*ITAG) Solyc08g041810.1.1 (e_value=8e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:27192696-27193214 transcript_region:SL2.40ch08:27192696..27193214+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018084g0020.1 protein AED:0.20 eAED:0.20 QI:0|0.81|0.88|0.94|0.81|0.88|17|569|601; (*GB) gi|359475862|ref|XP_002283008.2| (e_value=0.0) PREDICTED: neurochondrin-like [Vitis vinifera];; (*SWP) sp|Q640K1|NCDN_XENLA (e_value=2e-20) Neurochondrin OS=Xenopus laevis GN=ncdn PE=2 SV=1;; (*TAIR) AT4G32050.1 (e_value=0.0) | Symbols: | neurochondrin family protein | chr4:15496620-15500717 FORWARD LENGTH=618;; (*ITAG) Solyc08g041780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27112190-27127890 transcript_region:SL2.40ch08:27112190..27127890- functional_description:"Neurochondrin family protein (AHRD V1 ***- D7MAS5_ARALY); contains Interpro domain(s) IPR008709 Neurochondrin "; NbS00018084g0015.1 protein AED:0.24 eAED:0.24 QI:0|0.87|0.77|1|0.87|0.77|9|1361|323; (*GB) gi|359806029|ref|NP_001241175.1| (e_value=0.0) uncharacterized protein LOC100783788 [Glycine max];; (*TAIR) AT5G25265.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8754794-8756855 REVERSE LENGTH=366;; (*ITAG) Solyc08g041770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27032718-27037281 transcript_region:SL2.40ch08:27032718..27037281- functional_description:"Os04g0226400 protein (Fragment) (AHRD V1 *-*- C7J118_ORYSJ)"; NbS00018084g0013.1 protein AED:0.29 eAED:0.30 QI:0|1|0.8|1|1|1|5|0|424; (*GB) gi|3116212|dbj|BAA25921.1| (e_value=0.0) NTH23 [Nicotiana tabacum];; (*SWP) sp|P48000|KNAT3_ARATH (e_value=2e-173) Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1;; (*TAIR) AT5G25220.2 (e_value=9e-175) | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | chr5:8736208-8738087 FORWARD LENGTH=419;; (*ITAG) Solyc08g041820.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27254177-27258528 transcript_region:SL2.40ch08:27254177..27258528+ go_terms:GO:0005515 functional_description:"Homeobox protein knotted-1-like 3 (AHRD V1 ***- B6T3D1_MAIZE); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005515 NbS00022198g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|100; (*GB) gi|15236542|ref|NP_194911.1| (e_value=2e-43) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G31830.1 (e_value=5e-46) | Symbols: | unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15400803-15401105 REVERSE LENGTH=100;; (*ITAG) Solyc08g006800.1.1 (e_value=9e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1352124-1353633 transcript_region:SL2.40ch08:1352124..1353633+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007418g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|195; (*GB) gi|147861920|emb|CAN80916.1| (e_value=1e-51) hypothetical protein VITISV_024615 [Vitis vinifera];; (*TAIR) AT5G47530.1 (e_value=7e-21) | Symbols: | Auxin-responsive family protein | chr5:19281471-19282870 FORWARD LENGTH=395;; (*ITAG) Solyc12g017880.1.1 (e_value=2e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7611185-7613580 transcript_region:SL2.40ch12:7611185..7613580- functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6SK92_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00007418g0005.1 protein AED:0.16 eAED:0.16 QI:65|1|1|1|0.79|0.76|25|170|748; (*GB) gi|225446285|ref|XP_002267174.1| (e_value=0.0) PREDICTED: digestive organ expansion factor homolog [Vitis vinifera];; (*SWP) sp|Q8BTT6|DIEXF_MOUSE (e_value=3e-111) Digestive organ expansion factor homolog OS=Mus musculus GN=Diexf PE=2 SV=2;; (*TAIR) AT1G17690.1 (e_value=0.0) | Symbols: NOF1 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). | chr1:6082878-6088157 REVERSE LENGTH=754;; (*ITAG) Solyc07g009350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4389408-4407154 transcript_region:SL2.40ch07:4389408..4407154- go_terms:GO:0019843,GO:0034511 functional_description:"Digestive organ expansion factor (AHRD V1 **-- C0HA99_SALSA); contains Interpro domain(s) IPR010678 Protein of unknown function DUF1253 "; GO:0019843,GO:0034511 NbS00001833g0005.1 protein AED:0.13 eAED:0.13 QI:89|1|1|1|1|1|9|473|213; (*GB) gi|225445168|ref|XP_002284097.1| (e_value=1e-109) PREDICTED: methyltransferase-like protein 5 [Vitis vinifera];; (*SWP) sp|Q8K1A0|METL5_MOUSE (e_value=5e-58) Methyltransferase-like protein 5 OS=Mus musculus GN=Mettl5 PE=2 SV=2;; (*TAIR) AT4G28830.1 (e_value=6e-109) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:14232490-14233917 FORWARD LENGTH=208;; (*ITAG) Solyc12g006030.1.1 (e_value=4e-134) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:627271-629494 transcript_region:SL2.40ch12:627271..629494- go_terms:GO:0032259,GO:0008168 functional_description:"Methyltransferase like 5 (AHRD V1 ***- Q5XJ53_DANRE); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0032259,GO:0008168 NbS00001833g0106.1 protein AED:0.04 eAED:0.04 QI:590|1|1|1|0.93|0.87|16|321|1083 NbS00027426g0105.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|4|0|220 NbS00027426g0106.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0|2|0|160 NbS00048366g0005.1 protein AED:0.05 eAED:0.05 QI:146|1|1|1|1|1|2|82|179; (*ITAG) Solyc10g084730.1.1 (e_value=8e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63470291-63471068 transcript_region:SL2.40ch10:63470291..63471068- functional_description:"Unknown Protein (AHRD V1)"; NbS00048366g0004.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.8|1|1|5|0|186; (*GB) gi|297740106|emb|CBI30288.3| (e_value=6e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZW88|FBL34_ARATH (e_value=1e-22) F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1;; (*TAIR) AT1G67190.2 (e_value=8e-24) | Symbols: | F-box/RNI-like superfamily protein | chr1:25133054-25134313 FORWARD LENGTH=419;; (*ITAG) Solyc10g083480.1.1 (e_value=3e-32) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62586400-62588141 transcript_region:SL2.40ch10:62586400..62588141- functional_description:"F-box family protein (AHRD V1 ***- D7KV05_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC25792767g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|1|1|-1|1|1|0|149; (*GB) gi|3036953|dbj|BAA25395.1| (e_value=3e-103) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27491|CB27_TOBAC (e_value=1e-104) Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-90) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=8e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00004084g0005.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.33|0.75|4|419|260; (*GB) gi|225457081|ref|XP_002283199.1| (e_value=8e-127) PREDICTED: uncharacterized protein LOC100256944 [Vitis vinifera];; (*ITAG) Solyc06g071380.2.1 (e_value=2e-165) genomic_reference:SL2.40ch06 gene_region:40311694-40314918 transcript_region:SL2.40ch06:40311694..40314918+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004084g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|113205155|gb|ABI34274.1| (e_value=3e-54) IS10 transposase, putative [Solanum lycopersicum];; (*TAIR) AT5G62865.1 (e_value=2e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD LENGTH=167;; (*ITAG) Solyc06g071370.1.1 (e_value=1e-64) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:40310549-40311019 transcript_region:SL2.40ch06:40310549..40311019- functional_description:"NHL repeat-containing protein-like (AHRD V1 ***- Q6Z2V7_ORYSJ)"; NbS00008609g0005.1 protein AED:0.10 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|147845848|emb|CAN80091.1| (e_value=0.0) hypothetical protein VITISV_015121 [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-149) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT1G30700.1 (e_value=1e-170) | Symbols: | FAD-binding Berberine family protein | chr1:10892623-10894437 FORWARD LENGTH=527;; (*ITAG) Solyc02g070090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34506045-34507649 transcript_region:SL2.40ch02:34506045..34507649- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7KFN2_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00008609g0006.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|224110866|ref|XP_002333020.1| (e_value=5e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=5e-47) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20820.1 (e_value=1e-50) | Symbols: | FAD-binding Berberine family protein | chr4:11150160-11151758 FORWARD LENGTH=532;; (*ITAG) Solyc02g070110.1.1 (e_value=3e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34521770-34523362 transcript_region:SL2.40ch02:34521770..34523362- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00008609g0018.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.92|0.93|15|137|592; (*GB) gi|255579537|ref|XP_002530611.1| (e_value=0.0) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q9SW44|RH16_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1;; (*TAIR) AT4G34910.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:16631661-16634834 FORWARD LENGTH=626;; (*ITAG) Solyc02g070100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34513483-34520188 transcript_region:SL2.40ch02:34513483..34520188+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- C6LRM7_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00008609g0020.1 protein AED:0.33 eAED:0.59 QI:0|0|0|0.6|0.25|0.4|5|0|167 NbS00008609g0019.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|61 NbS00055776g0002.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.5|1|1|2|0|131; (*GB) gi|224132066|ref|XP_002321247.1| (e_value=5e-12) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g080950.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:72795525-72796979 transcript_region:SL2.40ch01:72795525..72796979+ go_terms:GO:0009790 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00055776g0003.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.33|1|1|1|3|0|194; (*GB) gi|225443202|ref|XP_002268834.1| (e_value=2e-93) PREDICTED: uric acid degradation bifunctional protein TTL-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9LVM5|TTHL_ARATH (e_value=5e-74) Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1;; (*TAIR) AT5G58220.2 (e_value=2e-80) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=286;; (*ITAG) Solyc01g080940.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:72789735-72793615 transcript_region:SL2.40ch01:72789735..72793615+ go_terms:GO:0005515 functional_description:"5-hydroxyisourate hydrolase (AHRD V1 ***- B9SKJ6_RICCO); contains Interpro domain(s) IPR014306 Hydroxyisourate hydrolase "; GO:0005515 NbS00014161g0001.1 protein AED:0.06 eAED:0.06 QI:717|0.88|0.94|0.94|0.83|0.89|19|10|950; (*GB) gi|296085156|emb|CBI28651.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q92616|GCN1L_HUMAN (e_value=8e-23) Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6;; (*TAIR) AT1G64790.1 (e_value=0.0) | Symbols: ILA | ILITYHIA | chr1:24065232-24081908 REVERSE LENGTH=2610;; (*ITAG) Solyc04g050520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:46580155-46600878 transcript_region:SL2.40ch04:46580155..46600878- go_terms:GO:0005488 functional_description:"Translational activator gcn1 (AHRD V1 **-- Q177C0_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00053453g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.71|1|1|1|7|0|488; (*GB) gi|121308298|dbj|BAF43573.1| (e_value=0.0) pectate lyase [Prunus persica];; (*SWP) sp|Q944R1|PLY15_ARATH (e_value=0.0) Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1;; (*TAIR) AT4G13710.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr4:7962550-7966012 FORWARD LENGTH=470;; (*ITAG) Solyc09g091430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66051415-66055786 transcript_region:SL2.40ch09:66051415..66055786- go_terms:GO:0016829 functional_description:"Pectate lyase 1-27 (AHRD V1 **** B9TU35_9ROSI); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00004817g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|356552565|ref|XP_003544636.1| (e_value=1e-57) PREDICTED: uncharacterized protein LOC100789226 [Glycine max];; (*SWP) sp|O23624|FPF1_ARATH (e_value=1e-53) Flowering-promoting factor 1 OS=Arabidopsis thaliana GN=FPF1 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=8e-55) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066970.2.1 (e_value=8e-44) genomic_reference:SL2.40ch01 gene_region:67676728-67677333 transcript_region:SL2.40ch01:67676728..67677333- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00037577g0006.1 protein AED:0.09 eAED:0.09 QI:242|0.5|0.4|1|1|1|5|0|548; (*GB) gi|302141943|emb|CBI19146.3| (e_value=8e-148) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SIN1|TTL3_ARATH (e_value=3e-74) Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2;; (*TAIR) AT5G65160.1 (e_value=3e-112) | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing protein | chr5:26031457-26033668 REVERSE LENGTH=593;; (*ITAG) Solyc04g073940.2.1 (e_value=4e-175) genomic_reference:SL2.40ch04 gene_region:57543061-57545105 transcript_region:SL2.40ch04:57543061..57545105- go_terms:GO:0030544,GO:0051082 functional_description:"Tetratricopeptide repeat-containing protein (AHRD V1 **-- D7MT84_ARALY); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0030544,GO:0051082 NbS00029493g0010.1 protein AED:0.11 eAED:0.11 QI:163|1|0.91|1|1|1|12|0|623; (*GB) gi|149676205|dbj|BAF64713.1| (e_value=0.0) 70 kDa subunit of replication protein A [Ipomoea nil];; (*SWP) sp|P27694|RFA1_HUMAN (e_value=3e-92) Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2;; (*TAIR) AT5G08020.1 (e_value=0.0) | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | chr5:2572107-2574879 FORWARD LENGTH=604;; (*ITAG) Solyc03g115050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58937751-58941209 transcript_region:SL2.40ch03:58937751..58941209- go_terms:GO:0005515,GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 **** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0005515,GO:0003697 NbS00029493g0012.1 protein AED:0.30 eAED:0.32 QI:27|0|0|1|0|0|2|0|424; (*GB) gi|225436984|ref|XP_002272235.1| (e_value=0.0) PREDICTED: basic 7S globulin [Vitis vinifera];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=1e-77) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=1e-147) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc03g115040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:58935701-58937532 transcript_region:SL2.40ch03:58935701..58937532+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00029493g0011.1 protein AED:0.41 eAED:0.45 QI:0|0|0|1|0|0|3|0|188; (*GB) gi|255552241|ref|XP_002517165.1| (e_value=4e-61) basic 7S globulin 2 precursor small subunit, putative [Ricinus communis];; (*SWP) sp|Q8RVH5|7SBG2_SOYBN (e_value=7e-21) Basic 7S globulin 2 OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G03220.1 (e_value=8e-43) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc03g115040.2.1 (e_value=5e-82) genomic_reference:SL2.40ch03 gene_region:58935701-58937532 transcript_region:SL2.40ch03:58935701..58937532+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00029493g0013.1 protein AED:0.42 eAED:0.43 QI:0|0|0|1|0|0|3|0|180; (*GB) gi|296086729|emb|CBI32364.3| (e_value=4e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RVH5|7SBG2_SOYBN (e_value=3e-32) Basic 7S globulin 2 OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G03220.1 (e_value=9e-64) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc03g115040.2.1 (e_value=1e-89) genomic_reference:SL2.40ch03 gene_region:58935701-58937532 transcript_region:SL2.40ch03:58935701..58937532+ go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00011441g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|598; (*GB) gi|225448934|ref|XP_002272074.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266758 [Vitis vinifera];; (*TAIR) AT2G39210.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601;; (*ITAG) Solyc05g055540.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:64289381-64291081 transcript_region:SL2.40ch05:64289381..64291081- go_terms:GO:0055085 functional_description:"Nodulin family protein (AHRD V1 ***- D7MWD3_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; GO:0055085 NbS00011441g0010.1 protein AED:0.28 eAED:0.30 QI:184|0.83|0.85|1|0.66|0.71|7|138|195; (*GB) gi|224097770|ref|XP_002311072.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT3G10405.1 (e_value=7e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3233978-3235118 REVERSE LENGTH=212;; (*ITAG) Solyc05g055550.2.1 (e_value=2e-96) genomic_reference:SL2.40ch05 gene_region:64293196-64296760 transcript_region:SL2.40ch05:64293196..64296760- functional_description:"Chromosome 07 contig 1 DNA sequence (AHRD V1 ***- Q015I8_OSTTA)"; NbS00011441g0009.1 protein AED:0.13 eAED:0.16 QI:0|0|0.5|1|0|0|2|0|258; (*GB) gi|255577436|ref|XP_002529597.1| (e_value=5e-63) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G39170.1 (e_value=9e-44) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function NEP (InterPro:IPR019320); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:16334726-16335421 REVERSE LENGTH=231;; (*ITAG) Solyc02g033070.1.1 (e_value=1e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:20439825-20440430 transcript_region:SL2.40ch02:20439825..20440430+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019320 Protein of unknown function NEP "; NbS00017207g0004.1 protein AED:0.27 eAED:0.52 QI:0|0|0|1|0.25|0.2|5|0|114; (*GB) gi|38488407|emb|CAE55203.1| (e_value=1e-28) protein kinase 1 [Nicotiana tabacum];; (*SWP) sp|P93749|Y2197_ARATH (e_value=6e-29) Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1;; (*TAIR) AT2G41970.1 (e_value=5e-30) | Symbols: | Protein kinase superfamily protein | chr2:17520517-17522304 REVERSE LENGTH=365;; (*ITAG) Solyc09g090210.2.1 (e_value=9e-35) genomic_reference:SL2.40ch09 gene_region:65114894-65117600 transcript_region:SL2.40ch09:65114894..65117600- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** C6ZRT7_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00022638g0012.1 protein AED:0.24 eAED:0.25 QI:0|0.5|0.2|1|0.75|0.6|5|0|897; (*GB) gi|145839451|gb|ABP96804.1| (e_value=0.0) receptor-like protein kinase [Capsicum annuum];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=1e-106) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT4G18250.1 (e_value=2e-111) | Symbols: | receptor serine/threonine kinase, putative | chr4:10087343-10091963 REVERSE LENGTH=853;; (*ITAG) Solyc05g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3204827-3207336 transcript_region:SL2.40ch05:3204827..3207336- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- D3G6F0_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022638g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.66|0.71|1|0.83|0.71|7|451|391; (*GB) gi|225424053|ref|XP_002279675.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 15 [Vitis vinifera];; (*SWP) sp|Q9M9C6|P2C15_ARATH (e_value=0.0) Probable protein phosphatase 2C 15 OS=Arabidopsis thaliana GN=At1g68410 PE=2 SV=1;; (*TAIR) AT1G68410.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:25650262-25652255 REVERSE LENGTH=436;; (*ITAG) Solyc05g009070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3217567-3220496 transcript_region:SL2.40ch05:3217567..3220496+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00022638g0013.1 protein AED:0.45 eAED:0.53 QI:58|0.66|0|0.75|1|1|4|212|22 NbS00055079g0008.1 protein AED:0.10 eAED:0.10 QI:0|0.81|0.58|0.94|0.81|0.76|17|0|989; (*GB) gi|224141489|ref|XP_002324104.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6KCD5|NIPBL_MOUSE (e_value=2e-65) Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1;; (*TAIR) AT5G15540.1 (e_value=0.0) | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846;; (*ITAG) Solyc03g059420.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:27055070-27066970 transcript_region:SL2.40ch03:27055070..27066970+ go_terms:GO:0008270,GO:0005488 functional_description:"Sister chromatid cohesion 2 (AHRD V1 **-- D7M7D7_ARALY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0008270,GO:0005488 NbS00055079g0003.1 protein AED:0.23 eAED:0.23 QI:0|0|0|0.25|1|1|4|0|144; (*GB) gi|359489025|ref|XP_002279278.2| (e_value=2e-24) PREDICTED: nipped-B-like protein-like [Vitis vinifera];; (*TAIR) AT5G15540.1 (e_value=1e-18) | Symbols: EMB2773, ATSCC2, SCC2 | PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846;; (*ITAG) Solyc03g059400.1.1 (e_value=6e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:27042818-27044026 transcript_region:SL2.40ch03:27042818..27044026+ functional_description:"Sister chromatid cohesion 2 (AHRD V1 ***- A5HEI1_ARATH)"; NbS00062045g0004.1 protein AED:0.36 eAED:0.48 QI:75|0.5|0.28|0.85|1|1|7|0|222; (*GB) gi|15234962|ref|NP_195626.1| (e_value=3e-85) DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=1e-54) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT4G39150.2 (e_value=8e-88) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr4:18233651-18235740 REVERSE LENGTH=345;; (*ITAG) Solyc01g109890.2.1 (e_value=8e-130) genomic_reference:SL2.40ch01 gene_region:88496281-88501685 transcript_region:SL2.40ch01:88496281..88501685+ go_terms:GO:0030544,GO:0051087 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 **** B6T7D7_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544,GO:0051087 NbC26074276g0004.1 protein AED:0.63 eAED:0.67 QI:0|0|0|0.75|1|0.75|4|0|116; (*GB) gi|356542027|ref|XP_003539473.1| (e_value=4e-39) PREDICTED: GTPase Der-like [Glycine max];; (*SWP) sp|B3ETF1|DER_AMOA5 (e_value=3e-22) GTPase Der OS=Amoebophilus asiaticus (strain 5a2) GN=der PE=3 SV=1;; (*TAIR) AT3G12080.2 (e_value=6e-36) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851677 FORWARD LENGTH=587;; (*ITAG) Solyc11g065870.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48525816-48539876 transcript_region:SL2.40ch11:48525816..48539876+ go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein engA (AHRD V1 ***- Q9LH58_ARATH); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0005525,GO:0005622 NbS00005825g0013.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|1|0.25|0.2|5|0|345; (*GB) gi|225437241|ref|XP_002275598.1| (e_value=6e-157) PREDICTED: E3 ubiquitin protein ligase DRIP2 [Vitis vinifera];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=4e-103) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=3e-104) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc06g084040.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45588705-45594967 transcript_region:SL2.40ch06:45588705..45594967- go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00005825g0012.1 protein AED:0.00 eAED:0.00 QI:140|1|1|1|0|0|2|7|142; (*GB) gi|388502126|gb|AFK39129.1| (e_value=5e-27) unknown [Lotus japonicus];; (*SWP) sp|Q39194|PSBW_ARATH (e_value=2e-23) Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2;; (*TAIR) AT2G30570.1 (e_value=2e-24) | Symbols: PSBW | photosystem II reaction center W | chr2:13019326-13020053 REVERSE LENGTH=133;; (*ITAG) Solyc06g084050.2.1 (e_value=7e-29) genomic_reference:SL2.40ch06 gene_region:45606674-45608051 transcript_region:SL2.40ch06:45606674..45608051+ go_terms:GO:0009523 functional_description:"Photosystem II reaction center W protein (AHRD V1 ***- B6TMB3_MAIZE); contains Interpro domain(s) IPR009806 Photosystem II protein PsbW, class 2 "; GO:0009523 NbS00005825g0011.1 protein AED:0.05 eAED:0.05 QI:203|1|1|1|1|1|11|262|604; (*GB) gi|225437221|ref|XP_002275262.1| (e_value=0.0) PREDICTED: F-box/LRR-repeat protein 17 [Vitis vinifera];; (*SWP) sp|Q8W104|FBL17_ARATH (e_value=1e-179) F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana GN=FBL17 PE=1 SV=1;; (*TAIR) AT3G54650.1 (e_value=0.0) | Symbols: FBL17 | RNI-like superfamily protein | chr3:20226004-20228882 REVERSE LENGTH=593;; (*ITAG) Solyc09g065880.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59750223-59755020 transcript_region:SL2.40ch09:59750223..59755020- go_terms:GO:0005515,GO:0004842 functional_description:"Leucine Rich Repeat family protein expressed (AHRD V1 ***- Q10GD4_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00019905g0008.1 protein AED:0.22 eAED:0.31 QI:0|0.8|0.83|1|0.8|0.83|6|522|239; (*GB) gi|297733850|emb|CBI15097.3| (e_value=3e-66) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G48120.1 (e_value=1e-32) | Symbols: | unknown protein; Has 22990 Blast hits to 12942 proteins in 666 species: Archae - 8; Bacteria - 739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses - 116; Other Eukaryotes - 4496 (source: NCBI BLink). | chr3:17772137-17774550 FORWARD LENGTH=328;; (*ITAG) Solyc12g027740.1.1 (e_value=3e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:19452624-19455248 transcript_region:SL2.40ch12:19452624..19455248- functional_description:"Arginine/serine-rich coiled coil protein 1 (AHRD V1 ***- B6TT29_MAIZE)"; NbS00019905g0009.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.2|1|1|1|5|0|564; (*GB) gi|225463151|ref|XP_002266966.1| (e_value=0.0) PREDICTED: anaphase-promoting complex subunit 8 [Vitis vinifera];; (*SWP) sp|Q9STS3|CDC23_ARATH (e_value=0.0) Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1;; (*TAIR) AT3G48150.1 (e_value=0.0) | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579;; (*ITAG) Solyc03g113740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00008032g0011.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0.5|2|0|93; (*ITAG) Solyc01g065800.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798531-64799273 transcript_region:SL2.40ch01:64798531..64799273+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008032g0014.1 protein AED:0.39 eAED:0.48 QI:0|0|0|1|0|0|2|0|155; (*GB) gi|57014019|ref|YP_173490.1| (e_value=2e-64) hypothetical protein NitaMp153 [Nicotiana tabacum];; (*ITAG) Solyc01g065790.1.1 (e_value=3e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024659g0003.1 protein AED:0.02 eAED:0.02 QI:202|1|1|1|1|1|4|216|428; (*GB) gi|350535176|ref|NP_001234692.1| (e_value=0.0) protein phosphatase 2C AHG3 homolog [Solanum lycopersicum];; (*SWP) sp|P49598|P2C37_ARATH (e_value=2e-135) Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1;; (*TAIR) AT3G11410.1 (e_value=1e-136) | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 2CA | chr3:3584181-3585649 REVERSE LENGTH=399;; (*ITAG) Solyc03g096670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52436558-52438511 transcript_region:SL2.40ch03:52436558..52438511+ go_terms:GO:0004722,GO:0008022 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 *-** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00009459g0002.1 protein AED:0.01 eAED:0.01 QI:117|1|1|1|0.66|0.75|4|0|197; (*GB) gi|224129280|ref|XP_002328935.1| (e_value=8e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT1G01630.1 (e_value=5e-56) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc03g118150.2.1 (e_value=4e-96) genomic_reference:SL2.40ch03 gene_region:61156088-61158567 transcript_region:SL2.40ch03:61156088..61158567+ go_terms:GO:0008526 functional_description:"Sec14-like (Fragment) (AHRD V1 **-- Q6R655_MELLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00007831g0004.1 protein AED:0.61 eAED:0.66 QI:0|0.37|0.11|0.55|0.62|0.88|9|0|520; (*GB) gi|224074155|ref|XP_002304277.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6BCB4|SC16B_RABIT (e_value=4e-24) Protein transport protein Sec16B OS=Oryctolagus cuniculus GN=SEC16B PE=2 SV=1;; (*TAIR) AT5G47490.1 (e_value=2e-148) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007360.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1919118-1928036 transcript_region:SL2.40ch08:1919118..1928036- go_terms:GO:0032259 functional_description:"COPII coat assembly protein SEC16 (AHRD V1 *-*- C5FKS9_NANOT)"; GO:0032259 NbS00007831g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|242; (*GB) gi|225440183|ref|XP_002278250.1| (e_value=6e-52) PREDICTED: Werner Syndrome-like exonuclease [Vitis vinifera];; (*SWP) sp|Q84LH3|WEX_ARATH (e_value=1e-16) Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX PE=1 SV=1;; (*TAIR) AT3G12410.1 (e_value=1e-25) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:3946267-3946959 REVERSE LENGTH=230;; (*ITAG) Solyc08g007350.1.1 (e_value=1e-111) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00043748g0003.1 protein AED:0.13 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|211; (*ITAG) Solyc04g050030.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:44336875-44340335 transcript_region:SL2.40ch04:44336875..44340335- functional_description:"Unknown Protein (AHRD V1)"; NbS00043748g0008.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|0|0|4|0|338; (*GB) gi|584779|sp|P37822.1|AROG_SOLTU (e_value=4e-135) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2; AltName: Full=DAHP synthase 2; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase 2; Flags: Precursor;; (*SWP) sp|P37822|AROG_SOLTU (e_value=1e-136) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1;; (*TAIR) AT4G33510.1 (e_value=4e-115) | Symbols: DHS2 | 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase | chr4:16116496-16118549 FORWARD LENGTH=507;; (*ITAG) Solyc11g009080.1.1 (e_value=3e-137) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3200299-3203598 transcript_region:SL2.40ch11:3200299..3203598+ go_terms:GO:0009073 functional_description:"Phospho-2-dehydro-3-deoxyheptonate aldolase 1 (AHRD V1 ***- B6TUB8_MAIZE); contains Interpro domain(s) IPR002480 DAHP synthetase, class II "; GO:0009073 NbS00038222g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|359486352|ref|XP_003633433.1| (e_value=2e-62) PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Vitis vinifera];; (*SWP) sp|Q9LYL9|Y3623_ARATH (e_value=2e-41) BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1;; (*TAIR) AT3G56230.1 (e_value=1e-42) | Symbols: | BTB/POZ domain-containing protein | chr3:20860899-20862135 REVERSE LENGTH=282;; (*ITAG) Solyc06g050860.2.1 (e_value=3e-84) genomic_reference:SL2.40ch06 gene_region:30197053-30200697 transcript_region:SL2.40ch06:30197053..30200697- go_terms:GO:0005515 functional_description:"Speckle-type poz protein (AHRD V1 *--- B0X7L3_CULQU); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00059145g0001.1 protein AED:0.20 eAED:0.20 QI:0|1|0.87|1|1|1|8|0|530; (*GB) gi|309401691|gb|ADO79931.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana tabacum];; (*SWP) sp|Q6NLQ6|CDPKW_ARATH (e_value=0.0) Calcium-dependent protein kinase 32 OS=Arabidopsis thaliana GN=CPK32 PE=1 SV=1;; (*TAIR) AT3G57530.1 (e_value=0.0) | Symbols: CPK32, ATCPK32, CDPK32 | calcium-dependent protein kinase 32 | chr3:21296898-21299351 REVERSE LENGTH=538;; (*ITAG) Solyc10g079130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60064941-60068542 transcript_region:SL2.40ch10:60064941..60068542- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00059145g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|119 NbS00007996g0003.1 protein AED:0.16 eAED:0.20 QI:22|0.83|0.85|1|1|0.85|7|440|481; (*GB) gi|113205424|gb|AAU90341.2| (e_value=0.0) hypothetical protein SDM1_56t00018 [Solanum demissum];; (*TAIR) AT4G24900.1 (e_value=2e-103) | Symbols: | unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:12814867-12817388 FORWARD LENGTH=421;; (*ITAG) Solyc03g098330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54121751-54127481 transcript_region:SL2.40ch03:54121751..54127481+ functional_description:"LOC100036982 protein (Fragment) (AHRD V1 ***- A1L2X7_XENLA)"; NbS00044055g0007.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|0|0|3|0|538; (*GB) gi|224113557|ref|XP_002332553.1| (e_value=2e-104) cc-nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q7XA40|RGA3_SOLBU (e_value=9e-72) Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=7e-67) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc10g085460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00044055g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|218; (*GB) gi|224115686|ref|XP_002332117.1| (e_value=1e-31) cc-nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q7XBQ9|RGA2_SOLBU (e_value=1e-27) Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1;; (*TAIR) AT3G50950.1 (e_value=1e-26) | Symbols: ZAR1 | HOPZ-ACTIVATED RESISTANCE 1 | chr3:18936127-18938685 FORWARD LENGTH=852;; (*ITAG) Solyc10g085460.1.1 (e_value=6e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63950789-63954634 transcript_region:SL2.40ch10:63950789..63954634- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00017520g0008.1 protein AED:0.15 eAED:0.15 QI:205|1|1|1|1|1|9|1211|408; (*GB) gi|224078840|ref|XP_002305648.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=5e-170) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1;; (*TAIR) AT4G05090.1 (e_value=4e-171) | Symbols: | Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397;; (*ITAG) Solyc02g079250.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38432003-38443209 transcript_region:SL2.40ch02:38432003..38443209+ go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase-like protein (AHRD V1 **** Q682R6_ARATH); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008441 NbS00017520g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|224076777|ref|XP_002304995.1| (e_value=6e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g079240.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38429123-38429362 transcript_region:SL2.40ch02:38429123..38429362- functional_description:"Unknown Protein (AHRD V1)"; NbS00049262g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.75|1|1|1|4|0|332; (*GB) gi|255561000|ref|XP_002521512.1| (e_value=0.0) Peroxidase 72 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=3e-163) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=2e-164) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc03g033710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9595371-9598379 transcript_region:SL2.40ch03:9595371..9598379+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00049262g0005.1 protein AED:0.37 eAED:0.37 QI:61|1|1|1|0.66|0.75|4|290|112; (*GB) gi|357483627|ref|XP_003612100.1| (e_value=7e-33) Ubiquitin carrier protein [Medicago truncatula];; (*SWP) sp|Q9FMM0|UBC18_ARATH (e_value=4e-30) Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1;; (*TAIR) AT5G42990.1 (e_value=3e-31) | Symbols: UBC18 | ubiquitin-conjugating enzyme 18 | chr5:17244206-17245904 REVERSE LENGTH=161;; (*ITAG) Solyc02g084760.2.1 (e_value=8e-34) genomic_reference:SL2.40ch02 gene_region:42439595-42444201 transcript_region:SL2.40ch02:42439595..42444201+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00002564g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|258; (*GB) gi|147858960|emb|CAN80825.1| (e_value=5e-149) hypothetical protein VITISV_015452 [Vitis vinifera];; (*SWP) sp|O81007|GT7_ARATH (e_value=2e-121) Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1;; (*TAIR) AT2G22900.1 (e_value=1e-122) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr2:9744359-9746193 REVERSE LENGTH=449;; (*ITAG) Solyc03g043920.2.1 (e_value=1e-149) genomic_reference:SL2.40ch03 gene_region:11602632-11605461 transcript_region:SL2.40ch03:11602632..11605461- go_terms:GO:0016757 functional_description:"Alpha-6-galactosyltransferase (AHRD V1 **-- Q5TIN0_MEDTR); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0016757 NbS00002564g0001.1 protein AED:0.33 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|224127172|ref|XP_002320005.1| (e_value=4e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|O81007|GT7_ARATH (e_value=1e-77) Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1;; (*TAIR) AT2G22900.1 (e_value=1e-78) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr2:9744359-9746193 REVERSE LENGTH=449;; (*ITAG) Solyc03g043920.2.1 (e_value=1e-76) genomic_reference:SL2.40ch03 gene_region:11602632-11605461 transcript_region:SL2.40ch03:11602632..11605461- go_terms:GO:0016757 functional_description:"Alpha-6-galactosyltransferase (AHRD V1 **-- Q5TIN0_MEDTR); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0016757 NbS00002564g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|55956978|emb|CAI11453.1| (e_value=0.0) alpha-6-galactosyltransferase [Nicotiana benthamiana];; (*SWP) sp|O81007|GT7_ARATH (e_value=1e-170) Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1;; (*TAIR) AT2G22900.1 (e_value=1e-171) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr2:9744359-9746193 REVERSE LENGTH=449;; (*ITAG) Solyc02g092210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47942901-47944232 transcript_region:SL2.40ch02:47942901..47944232+ go_terms:GO:0016757 functional_description:"Alpha-6-galactosyltransferase (AHRD V1 **-- Q5TIN2_SOLTU); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0016757 NbS00002564g0010.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|82 NbS00002564g0015.1 protein AED:0.41 eAED:0.67 QI:0|1|0|1|1|0.66|3|0|113; (*ITAG) Solyc02g092200.2.1 (e_value=6e-22) genomic_reference:SL2.40ch02 gene_region:47939396-47940657 transcript_region:SL2.40ch02:47939396..47940657+ functional_description:"Genomic DNA chromosome 5 TAC clone K9I9 (AHRD V1 *-*- Q9FJV9_ARATH)"; NbS00014838g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.33|0.25|4|0|378; (*GB) gi|350536739|ref|NP_001234774.1| (e_value=4e-135) subtilisin-like protease precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=1e-44) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=3e-48) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084320.1.1 (e_value=6e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00014838g0010.1 protein AED:0.40 eAED:0.51 QI:0|0|0|1|0|0|2|0|133; (*GB) gi|225458651|ref|XP_002282841.1| (e_value=4e-20) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-12) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67090.1 (e_value=1e-14) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc10g084560.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63356509-63358302 transcript_region:SL2.40ch10:63356509..63358302- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00033525g0004.1 protein AED:0.12 eAED:0.12 QI:77|0.71|0.62|1|0.71|0.75|8|564|477; (*GB) gi|224100951|ref|XP_002312081.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39570.1 (e_value=0.0) | Symbols: | ACT domain-containing protein | chr2:16507963-16509741 FORWARD LENGTH=411;; (*ITAG) Solyc05g054620.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63640937-63645239 transcript_region:SL2.40ch05:63640937..63645239+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TDN9_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00052589g0007.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.5|1|0.71|0.75|8|141|695; (*GB) gi|225457879|ref|XP_002269753.1| (e_value=0.0) PREDICTED: subtilisin-like protease-like [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-136) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G20160.1 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993854 REVERSE LENGTH=769;; (*ITAG) Solyc04g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019073g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|0|1|0|71 NbS00029700g0004.1 protein AED:0.04 eAED:0.11 QI:0|0.33|0.5|1|0|0.25|4|0|316; (*GB) gi|225429476|ref|XP_002277676.1| (e_value=8e-52) PREDICTED: transcription factor MYB1R1 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=3e-24) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G56840.1 (e_value=1e-43) | Symbols: | myb-like transcription factor family protein | chr5:22980789-22982152 FORWARD LENGTH=233;; (*ITAG) Solyc08g065380.2.1 (e_value=2e-80) genomic_reference:SL2.40ch08 gene_region:50511820-50515346 transcript_region:SL2.40ch08:50511820..50515346- go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 **** B1Q4U5_9ROSI); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00022111g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.66|1|0|0.33|3|519|183; (*GB) gi|224131138|ref|XP_002321010.1| (e_value=3e-84) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02870.1 (e_value=6e-77) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:637401-638603 REVERSE LENGTH=193;; (*ITAG) Solyc09g075030.2.1 (e_value=7e-98) genomic_reference:SL2.40ch09 gene_region:62328448-62330766 transcript_region:SL2.40ch09:62328448..62330766+ functional_description:"Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis (ISS) (AHRD V1 *-*- Q01AF2_OSTTA); contains Interpro domain(s) IPR019002 Ribosome biogenesis protein Nop16 "; NbS00022878g0019.1 protein AED:0.36 eAED:0.36 QI:68|0.85|0.75|1|0.71|0.62|8|0|229; (*GB) gi|225449863|ref|XP_002265279.1| (e_value=8e-147) PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Vitis vinifera];; (*SWP) sp|Q5PQR5|IMP4_RAT (e_value=9e-72) U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1;; (*TAIR) AT1G63780.1 (e_value=3e-125) | Symbols: IMP4 | Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294;; (*ITAG) Solyc01g007250.2.1 (e_value=4e-156) genomic_reference:SL2.40ch01 gene_region:1809283-1813878 transcript_region:SL2.40ch01:1809283..1813878- functional_description:"U3 small nucleolar ribonucleoprotein protein IMP4 (AHRD V1 ***- D0N3A6_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; NbS00022878g0017.1 protein AED:0.02 eAED:0.02 QI:301|1|1|1|1|1|4|199|520; (*GB) gi|255540205|ref|XP_002511167.1| (e_value=0.0) Phospholipase C 4 precursor, putative [Ricinus communis];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=6e-22) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT3G48610.1 (e_value=0.0) | Symbols: NPC6 | non-specific phospholipase C6 | chr3:18011653-18013959 REVERSE LENGTH=520;; (*ITAG) Solyc03g019670.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6624873-6627974 transcript_region:SL2.40ch03:6624873..6627974- go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7LEV5_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00022878g0007.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.33|1|1|3|0|170; (*ITAG) Solyc04g053070.1.1 (e_value=7e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00022878g0018.1 protein AED:0.28 eAED:0.28 QI:350|0.78|0.8|1|1|1|15|722|564; (*GB) gi|359491097|ref|XP_003634219.1| (e_value=0.0) PREDICTED: CBS domain-containing protein CBSCBSPB5-like isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH79|Y5064_ARATH (e_value=0.0) CBS domain-containing protein CBSCBSPB5 OS=Arabidopsis thaliana GN=CBSCBSPB5 PE=2 SV=1;; (*TAIR) AT5G50530.1 (e_value=0.0) | Symbols: | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein | chr5:20571876-20574922 REVERSE LENGTH=548;; (*ITAG) Solyc03g019680.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6629630-6635879 transcript_region:SL2.40ch03:6629630..6635879- functional_description:"CBS domain containing protein (AHRD V1 ***- B6U1W0_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00022878g0016.1 protein AED:0.18 eAED:0.28 QI:75|0.5|0.66|1|1|0.66|3|0|194; (*GB) gi|224136191|ref|XP_002322266.1| (e_value=6e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SW33|TL1Y_ARATH (e_value=3e-31) Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1;; (*TAIR) AT4G24930.1 (e_value=3e-32) | Symbols: | thylakoid lumenal 17.9 kDa protein, chloroplast | chr4:12821496-12822389 REVERSE LENGTH=225;; (*ITAG) Solyc03g019660.2.1 (e_value=5e-59) genomic_reference:SL2.40ch03 gene_region:6617595-6620127 transcript_region:SL2.40ch03:6617595..6620127- functional_description:"Thylakoid lumenal 17.9 kDa protein, chloroplastic (AHRD V1 ***- TL1Y_ARATH)"; NbS00034892g0003.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|225441591|ref|XP_002281619.1| (e_value=3e-82) PREDICTED: ethylene-responsive transcription factor RAP2-11 [Vitis vinifera];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=2e-26) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=1e-27) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc10g078610.1.1 (e_value=9e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59698868-59699743 transcript_region:SL2.40ch10:59698868..59699743- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1B (AHRD V1 *-*- ERF92_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00034892g0005.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.25|1|1|4|0|140; (*GB) gi|255581564|ref|XP_002531587.1| (e_value=3e-60) Cofactor required for Sp1 transcriptional activation subunit, putative [Ricinus communis];; (*SWP) sp|Q55DQ5|MED7_DICDI (e_value=3e-20) Putative mediator of RNA polymerase II transcription subunit 7 OS=Dictyostelium discoideum GN=med7 PE=3 SV=1;; (*TAIR) AT5G03500.3 (e_value=2e-56) | Symbols: | Mediator complex, subunit Med7 | chr5:876673-877660 REVERSE LENGTH=168;; (*ITAG) Solyc04g081430.2.1 (e_value=1e-65) genomic_reference:SL2.40ch04 gene_region:63005415-63007770 transcript_region:SL2.40ch04:63005415..63007770+ go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 7 (AHRD V1 **** C1C4Y2_RANCA); contains Interpro domain(s) IPR009244 Mediator complex, subunit Med7 "; GO:0003713 NbS00002304g0003.1 protein AED:0.08 eAED:0.08 QI:277|0|0.5|1|0|0.5|2|213|141; (*GB) gi|224057529|ref|XP_002299252.1| (e_value=1e-34) predicted protein [Populus trichocarpa]; NbS00002304g0008.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|5|457|266; (*GB) gi|388493818|gb|AFK34975.1| (e_value=3e-74) unknown [Lotus japonicus];; (*TAIR) AT5G53070.1 (e_value=3e-74) | Symbols: | Ribosomal protein L9/RNase H1 | chr5:21518837-21520167 FORWARD LENGTH=221;; (*ITAG) Solyc05g032880.2.1 (e_value=5e-139) genomic_reference:SL2.40ch05 gene_region:45539872-45546212 transcript_region:SL2.40ch05:45539872..45546212+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L9 (AHRD V1 ***- D6SS62_9DELT); contains Interpro domain(s) IPR000244 Ribosomal protein L9 "; GO:0005840 NbS00023585g0014.1 protein AED:0.16 eAED:0.16 QI:0|0.6|0.5|0.83|0.6|0.83|6|0|475; (*GB) gi|255562554|ref|XP_002522283.1| (e_value=7e-162) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=4e-73) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=3e-74) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc03g005950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:636645-641392 transcript_region:SL2.40ch03:636645..641392- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **** A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00023585g0003.1 protein AED:0.39 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|115 NbS00009961g0012.1 protein AED:0.29 eAED:0.29 QI:0|0.44|0.3|0.8|0.55|0.7|10|388|358; (*GB) gi|225446010|ref|XP_002268176.1| (e_value=4e-163) PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=3e-140) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G57330.1 (e_value=9e-145) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:23218392-23220664 FORWARD LENGTH=312;; (*ITAG) Solyc07g017900.2.1 (e_value=2e-176) genomic_reference:SL2.40ch07 gene_region:8283617-8294010 transcript_region:SL2.40ch07:8283617..8294010- go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7MN90_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0047938 NbS00021050g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|8547232|gb|AAF76308.1| (e_value=1e-15) Prf [Solanum pimpinellifolium];; (*ITAG) Solyc05g013280.2.1 (e_value=2e-18) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00021050g0004.1 protein AED:0.13 eAED:0.19 QI:0|0|0|1|0|0|2|0|151; (*ITAG) Solyc10g049530.1.1 (e_value=2e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00051979g0003.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.85|1|0.66|0.85|7|465|553; (*GB) gi|305689802|gb|ADM64334.1| (e_value=0.0) calcium-dependent protein kinase 9 [Nicotiana tabacum];; (*SWP) sp|Q9SSF8|CDPKU_ARATH (e_value=0.0) Calcium-dependent protein kinase 30 OS=Arabidopsis thaliana GN=CPK30 PE=1 SV=1;; (*TAIR) AT1G74740.1 (e_value=0.0) | Symbols: CPK30, CDPK1A, ATCPK30 | calcium-dependent protein kinase 30 | chr1:28080199-28082476 REVERSE LENGTH=541;; (*ITAG) Solyc03g113390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57593080-57598567 transcript_region:SL2.40ch03:57593080..57598567+ go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 **** A9Z0P8_DATME); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00033062g0010.1 protein AED:0.14 eAED:0.14 QI:356|1|1|1|1|1|6|0|329; (*GB) gi|225461876|ref|XP_002265352.1| (e_value=2e-122) PREDICTED: uncharacterized protein LOC100241265 [Vitis vinifera];; (*TAIR) AT5G55610.1 (e_value=4e-82) | Symbols: | unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22525981-22527858 FORWARD LENGTH=329;; (*ITAG) Solyc04g056610.2.1 (e_value=4e-169) genomic_reference:SL2.40ch04 gene_region:53730127-53737736 transcript_region:SL2.40ch04:53730127..53737736- functional_description:"Genomic DNA chromosome 5 P1 clone MDF20 (AHRD V1 ***- Q9FM77_ARATH)"; NbS00033062g0011.1 protein AED:0.36 eAED:0.37 QI:0|1|0.5|1|1|1|2|0|413; (*GB) gi|255543118|ref|XP_002512622.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8GZA4|CBSX6_ARATH (e_value=5e-179) CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1;; (*TAIR) AT1G65320.1 (e_value=4e-180) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr1:24260168-24262644 REVERSE LENGTH=425;; (*ITAG) Solyc04g056630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53756008-53762359 transcript_region:SL2.40ch04:53756008..53762359- functional_description:"CBS domain containing protein-like (AHRD V1 ***- Q5JJJ9_ORYSJ); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00015775g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.66|0.5|4|0|300; (*GB) gi|224103739|ref|XP_002313175.1| (e_value=6e-44) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g049720.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41978110-41979903 transcript_region:SL2.40ch10:41978110..41979903+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00015775g0108.1 protein AED:0.74 eAED:0.82 QI:0|0|0|0.33|1|1|3|0|68 NbS00015775g0107.1 protein AED:0.08 eAED:0.12 QI:0|0|0|1|1|1|5|0|339 NbS00022051g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|323; (*GB) gi|147828501|emb|CAN77580.1| (e_value=2e-91) hypothetical protein VITISV_015346 [Vitis vinifera];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=8e-28) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT5G03560.2 (e_value=1e-87) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:901452-902719 REVERSE LENGTH=363;; (*ITAG) Solyc01g102470.2.1 (e_value=7e-154) genomic_reference:SL2.40ch01 gene_region:83025974-83027160 transcript_region:SL2.40ch01:83025974..83027160- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00014587g0003.1 protein AED:0.22 eAED:0.22 QI:49|1|1|1|1|1|6|259|311; (*GB) gi|75338884|sp|Q9ZR40.1|U2A2B_NICPL (e_value=0.0) RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subunit B;; (*SWP) sp|Q9ZR40|U2A2B_NICPL (e_value=0.0) Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1;; (*TAIR) AT1G60900.1 (e_value=0.0) | Symbols: | U2 snRNP auxilliary factor, large subunit, splicing factor | chr1:22424008-22427806 FORWARD LENGTH=589;; (*ITAG) Solyc02g062920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29438210-29447611 transcript_region:SL2.40ch02:29438210..29447611+ go_terms:GO:0070742 functional_description:"Splicing factor U2AF large subunit (AHRD V1 ***- D8U7V9_VOLCA); contains Interpro domain(s) IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor "; GO:0070742 NbS00013113g0001.1 protein AED:0.07 eAED:0.08 QI:0|1|0.5|1|0|0|2|0|48; (*ITAG) Solyc00g022070.1.1 (e_value=2e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12007281-12007518 transcript_region:SL2.40ch00:12007281..12007518+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033998g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|244; (*ITAG) Solyc09g091680.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66281798-66282940 transcript_region:SL2.40ch09:66281798..66282940+ functional_description:"F-box family protein (AHRD V1 **-- D7L456_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00059901g0003.1 protein AED:0.19 eAED:0.20 QI:0|1|0.33|1|1|1|3|91|278; (*GB) gi|147833459|emb|CAN77470.1| (e_value=3e-133) hypothetical protein VITISV_029763 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=5e-57) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G28500.1 (e_value=2e-105) | Symbols: ANAC073, SND2, NAC073 | NAC domain containing protein 73 | chr4:14083014-14084266 FORWARD LENGTH=305;; (*ITAG) Solyc02g077610.2.1 (e_value=1e-149) genomic_reference:SL2.40ch02 gene_region:37073622-37077632 transcript_region:SL2.40ch02:37073622..37077632- go_terms:GO:0003700,GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H2Q1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700,GO:0016563 NbS00002378g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|0.5|0.33|3|176|959; (*GB) gi|339790465|dbj|BAK52389.1| (e_value=0.0) leucine rich repeat receptor protein kinase CLAVATA1 [Solanum pennellii];; (*SWP) sp|O49545|BAME1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT5G65700.2 (e_value=0.0) | Symbols: BAM1 | Leucine-rich receptor-like protein kinase family protein | chr5:26281826-26284945 FORWARD LENGTH=1003;; (*ITAG) Solyc02g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47648877-47652967 transcript_region:SL2.40ch02:47648877..47652967+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00003215g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=1e-67) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=2e-47) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=8e-71) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbS00003215g0003.1 protein AED:0.03 eAED:0.03 QI:53|0.5|0.33|0.66|1|1|3|0|566; (*GB) gi|359481919|ref|XP_003632692.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LIC3|PP227_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1;; (*TAIR) AT3G13770.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4519647-4521533 FORWARD LENGTH=628;; (*ITAG) Solyc03g051780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:18747870-18751039 transcript_region:SL2.40ch03:18747870..18751039+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1I2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00030050g0004.1 protein AED:0.26 eAED:0.26 QI:1411|0.42|0.62|0.87|0.85|0.75|8|227|431; (*GB) gi|255544254|ref|XP_002513189.1| (e_value=3e-94) arginine/serine rich splicing factor sf4/14, putative [Ricinus communis];; (*SWP) sp|Q94C11|SUGP1_ARATH (e_value=3e-58) SURP and G-patch domain-containing protein 1-like protein OS=Arabidopsis thaliana GN=At3g52120 PE=2 SV=1;; (*TAIR) AT3G52120.1 (e_value=2e-59) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein | chr3:19329243-19331738 FORWARD LENGTH=443;; (*ITAG) Solyc01g086890.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:73568813-73575413 transcript_region:SL2.40ch01:73568813..73575413- go_terms:GO:0006396,GO:0005622 functional_description:"Splicing factor 4-like protein (Fragment) (AHRD V1 *--- A6ML01_CALJA); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0006396,GO:0005622 NbS00000048g0007.1 protein AED:0.29 eAED:0.33 QI:0|1|0.8|1|0.66|0.7|10|616|258; (*GB) gi|297844334|ref|XP_002890048.1| (e_value=4e-114) hypothetical protein ARALYDRAFT_312429 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9CYW4|HDHD3_MOUSE (e_value=2e-25) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=2 SV=1;; (*TAIR) AT1G14310.1 (e_value=2e-114) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:4885049-4886672 FORWARD LENGTH=254;; (*ITAG) Solyc01g010830.2.1 (e_value=5e-156) genomic_reference:SL2.40ch01 gene_region:6230907-6239250 transcript_region:SL2.40ch01:6230907..6239250- go_terms:GO:0005515 functional_description:"HAD-superfamily hydrolase (AHRD V1 ***- D5A3P4_SPIPL); contains Interpro domain(s) IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like "; GO:0005515 NbS00000048g0002.1 protein AED:0.17 eAED:0.17 QI:200|1|0.66|1|0|0|3|77|694; (*GB) gi|255562822|ref|XP_002522416.1| (e_value=0.0) cullin, putative [Ricinus communis];; (*SWP) sp|Q9ZVH4|CUL3A_ARATH (e_value=0.0) Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1;; (*TAIR) AT1G26830.1 (e_value=0.0) | Symbols: CUL3A, ATCUL3A, ATCUL3, CUL3 | cullin 3 | chr1:9296063-9298374 FORWARD LENGTH=732;; (*ITAG) Solyc01g010820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:6221769-6229793 transcript_region:SL2.40ch01:6221769..6229793+ go_terms:GO:0030332 functional_description:"Cullin C (AHRD V1 ***- D3BHJ6_POLPA); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00007956g0001.1 protein AED:0.00 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|255584530|ref|XP_002532992.1| (e_value=8e-54) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=1e-23) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT2G37740.1 (e_value=4e-26) | Symbols: ATZFP10, ZFP10 | zinc-finger protein 10 | chr2:15827706-15828620 REVERSE LENGTH=304;; (*ITAG) Solyc09g011120.1.1 (e_value=3e-80) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4477726-4478556 transcript_region:SL2.40ch09:4477726..4478556- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00007956g0002.1 protein AED:0.41 eAED:0.89 QI:63|0|0.5|1|0|0.5|2|0|92 NbS00053594g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.75|1|1|0.75|4|221|1180; (*GB) gi|356510768|ref|XP_003524106.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=8e-164) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G46330.1 (e_value=6e-165) | Symbols: FLS2 | Leucine-rich receptor-like protein kinase family protein | chr5:18791802-18795407 FORWARD LENGTH=1173;; (*ITAG) Solyc02g072470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36241618-36245560 transcript_region:SL2.40ch02:36241618..36245560+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00059803g0001.1 protein AED:0.10 eAED:0.10 QI:156|0.87|0.88|1|0.62|0.44|9|435|207; (*GB) gi|40287468|gb|AAR83848.1| (e_value=2e-98) ribosomal protein PETRP [Capsicum annuum];; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=6e-89) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=4e-90) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071870.2.1 (e_value=3e-96) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00054521g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|532; (*GB) gi|225455459|ref|XP_002274808.1| (e_value=0.0) PREDICTED: multidrug and toxin extrusion protein 2-like [Vitis vinifera];; (*SWP) sp|Q9SIA5|DTX1_ARATH (e_value=6e-58) MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1;; (*TAIR) AT4G23030.1 (e_value=1e-180) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc03g026230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8046837-8048420 transcript_region:SL2.40ch03:8046837..8048420- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENT38); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00054521g0007.1 protein AED:0.40 eAED:0.43 QI:0|0.42|0.37|0.75|0.42|0.5|8|0|428; (*GB) gi|113205286|gb|ABI34327.1| (e_value=2e-122) Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum];; (*SWP) sp|P92966|RSP41_ARATH (e_value=3e-86) Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2;; (*TAIR) AT5G52040.1 (e_value=2e-87) | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21131081-21133318 FORWARD LENGTH=356;; (*ITAG) Solyc03g026240.2.1 (e_value=3e-148) genomic_reference:SL2.40ch03 gene_region:8057046-8061491 transcript_region:SL2.40ch03:8057046..8061491- go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 **-- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00025455g0003.1 protein AED:0.34 eAED:0.36 QI:401|0.5|0.57|1|0.66|0.71|7|143|48 NbS00009940g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|442; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=0.0) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=4e-169) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc01g095620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78589232-78591027 transcript_region:SL2.40ch01:78589232..78591027- go_terms:GO:0080043,GO:0080044 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043,GO:0080044 NbS00009940g0006.1 protein AED:0.13 eAED:0.13 QI:87|0.5|0.55|0.77|0.75|0.44|9|643|544; (*GB) gi|118486577|gb|ABK95127.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT5G32470.1 (e_value=0.0) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc04g050190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:44946920-44956676 transcript_region:SL2.40ch04:44946920..44956676+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- D2SGM4_GEOOG); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00021752g0008.1 protein AED:0.19 eAED:0.19 QI:292|0.88|0.9|1|0.77|0.9|10|391|243; (*GB) gi|225427372|ref|XP_002282944.1| (e_value=2e-132) PREDICTED: novel plant SNARE 11 [Vitis vinifera];; (*SWP) sp|Q944A9|NPS11_ARATH (e_value=1e-119) Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2;; (*TAIR) AT2G35190.1 (e_value=1e-120) | Symbols: NPSN11, ATNPSN11, NSPN11 | novel plant snare 11 | chr2:14831087-14832979 FORWARD LENGTH=265;; (*ITAG) Solyc08g077550.2.1 (e_value=7e-159) genomic_reference:SL2.40ch08 gene_region:58694975-58701643 transcript_region:SL2.40ch08:58694975..58701643+ go_terms:GO:0008565,GO:0005484 functional_description:"Novel plant SNARE 11 (AHRD V1 ***- B6TAD9_MAIZE); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0008565,GO:0005484 NbS00021752g0009.1 protein AED:0.27 eAED:0.27 QI:0|1|1|1|1|0.75|4|0|410; (*GB) gi|90900944|gb|ABE01834.1| (e_value=0.0) NAK-type protein kinase [Nicotiana tabacum];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=3e-161) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT5G47070.1 (e_value=2e-162) | Symbols: | Protein kinase superfamily protein | chr5:19118683-19120528 REVERSE LENGTH=410;; (*ITAG) Solyc08g077560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58707667-58711970 transcript_region:SL2.40ch08:58707667..58711970+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00042937g0007.1 protein AED:0.07 eAED:0.07 QI:162|1|0.87|1|0.85|0.62|8|392|548; (*GB) gi|224129150|ref|XP_002320513.1| (e_value=4e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJ41|C3H18_ARATH (e_value=1e-116) Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1;; (*TAIR) AT2G05160.1 (e_value=7e-118) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr2:1859011-1860931 REVERSE LENGTH=536;; (*ITAG) Solyc07g065290.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64330684-64333914 transcript_region:SL2.40ch07:64330684..64333914- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 18 (AHRD V1 ***- C3H18_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00042937g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|98; (*GB) gi|125561633|gb|EAZ07081.1| (e_value=6e-53) hypothetical protein OsI_29327 [Oryza sativa Indica Group];; (*TAIR) AT4G16450.2 (e_value=1e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. | chr4:9280132-9280541 FORWARD LENGTH=106;; (*ITAG) Solyc07g065280.2.1 (e_value=4e-58) genomic_reference:SL2.40ch07 gene_region:64327845-64329026 transcript_region:SL2.40ch07:64327845..64329026- functional_description:"Os08g0431500 protein (Fragment) (AHRD V1 ***- Q0J5I8_ORYSJ)"; NbS00052236g0002.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|4|0|302; (*GB) gi|75324707|sp|Q6T7E8.1|PURA_TOBAC (e_value=0.0) RecName: Full=Adenylosuccinate synthetase, chloroplastic; Short=AMPSase; Short=AdSS; AltName: Full=IMP--aspartate ligase; Flags: Precursor;; (*SWP) sp|Q6T7E8|PURA_TOBAC (e_value=0.0) Adenylosuccinate synthetase, chloroplastic OS=Nicotiana tabacum GN=PURA PE=2 SV=1;; (*TAIR) AT3G57610.1 (e_value=1e-179) | Symbols: ADSS | adenylosuccinate synthase | chr3:21334519-21336603 REVERSE LENGTH=490;; (*ITAG) Solyc02g085520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42949519-42961417 transcript_region:SL2.40ch02:42949519..42961417- go_terms:GO:0004019 functional_description:"Adenylosuccinate synthetase, chloroplastic (AHRD V1 **** PURA_SOLBU); contains Interpro domain(s) IPR001114 Adenylosuccinate synthetase "; GO:0004019 NbS00046514g0008.1 protein AED:0.12 eAED:0.14 QI:66|0.33|0|1|0.66|0.5|4|0|860; (*GB) gi|225432464|ref|XP_002277269.1| (e_value=1e-178) PREDICTED: putative E3 ubiquitin-protein ligase RF298-like [Vitis vinifera];; (*SWP) sp|Q0WPJ7|RF298_ARATH (e_value=3e-152) Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1;; (*TAIR) AT4G03000.2 (e_value=2e-153) | Symbols: | RING/U-box superfamily protein | chr4:1324602-1327348 FORWARD LENGTH=814;; (*ITAG) Solyc06g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2840267-2843968 transcript_region:SL2.40ch06:2840267..2843968- go_terms:GO:0008270 functional_description:"Inhibitor of apoptosis protein (AGAP011326-PA) (AHRD V1 *--- Q7QHS1_ANOGA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00009701g0004.1 protein AED:0.00 eAED:0.02 QI:0|1|0|1|1|1|2|0|911; (*GB) gi|359472612|ref|XP_002280971.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268019 [Vitis vinifera];; (*TAIR) AT1G70750.1 (e_value=2e-70) | Symbols: | Protein of unknown function, DUF593 | chr1:26680728-26683147 REVERSE LENGTH=749;; (*ITAG) Solyc04g007870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1544722-1548298 transcript_region:SL2.40ch04:1544722..1548298+ functional_description:"IFA-binding protein (AHRD V1 *--- Q9ZTZ4_ARATH); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00029609g0003.1 protein AED:0.31 eAED:0.31 QI:0|0.93|0.81|1|1|1|16|0|906; (*GB) gi|292677821|dbj|BAI99252.1| (e_value=0.0) trehalose 6-phosphate synthase [Nicotiana tabacum];; (*SWP) sp|Q9SYM4|TPS1_ARATH (e_value=0.0) Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1;; (*TAIR) AT1G78580.1 (e_value=0.0) | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552495-29557482 REVERSE LENGTH=942;; (*ITAG) Solyc07g062140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62163652-62177066 transcript_region:SL2.40ch07:62163652..62177066- go_terms:GO:0003825 functional_description:"Alpha alpha-trehalose-phosphate synthase (AHRD V1 **** D0NRZ0_PHYIN); contains Interpro domain(s) IPR012766 Alpha,alpha-trehalose-phosphate synthase "; GO:0003825 NbS00008686g0012.1 protein AED:0.13 eAED:0.16 QI:60|0.66|0|1|0.66|0.5|4|0|251; (*GB) gi|297738076|emb|CBI27277.3| (e_value=2e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5W6|14312_ARATH (e_value=1e-136) 14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1;; (*TAIR) AT1G26480.1 (e_value=8e-138) | Symbols: GRF12, GF14 IOTA | general regulatory factor 12 | chr1:9156573-9157845 REVERSE LENGTH=268;; (*ITAG) Solyc01g010360.2.1 (e_value=1e-146) genomic_reference:SL2.40ch01 gene_region:5171935-5175097 transcript_region:SL2.40ch01:5171935..5175097- go_terms:GO:0050815 functional_description:"14-3-3-like protein GF14 epsilon (AHRD V1 **-- 14310_ARATH); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00008686g0011.1 protein AED:0.19 eAED:0.22 QI:976|0.25|0.22|1|0.25|0.22|9|618|254; (*GB) gi|297738060|emb|CBI27261.3| (e_value=4e-82) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYW9|PMT4_ARATH (e_value=3e-80) Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2;; (*TAIR) AT1G13860.2 (e_value=5e-83) | Symbols: QUL1 | QUASIMODO2 LIKE 1 | chr1:4743754-4745707 REVERSE LENGTH=447;; (*ITAG) Solyc01g010370.2.1 (e_value=1e-120) genomic_reference:SL2.40ch01 gene_region:5195720-5200331 transcript_region:SL2.40ch01:5195720..5200331- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00035263g0004.1 protein AED:0.00 eAED:0.00 QI:33|1|1|1|1|1|2|394|96; (*ITAG) Solyc03g097080.2.1 (e_value=1e-15) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00011273g0004.1 protein AED:0.24 eAED:0.26 QI:0|0.28|0.2|0.93|1|1|15|0|1212; (*GB) gi|225441748|ref|XP_002277555.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis vinifera];; (*SWP) sp|P15398|RPA1_SCHPO (e_value=0.0) DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2;; (*TAIR) AT3G57660.1 (e_value=0.0) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00011273g0009.1 protein AED:0.60 eAED:0.69 QI:59|0|0|0.5|0|0.5|2|0|53 NbS00011273g0007.1 protein AED:0.17 eAED:0.17 QI:26|0.4|0.5|1|0.8|0.66|6|0|321; (*GB) gi|359490014|ref|XP_002275213.2| (e_value=6e-152) PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=2e-77) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=2e-78) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc10g080330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60938838-60941475 transcript_region:SL2.40ch10:60938838..60941475- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017077g0018.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|0|0|2|0|230; (*GB) gi|256274567|gb|ACU68503.1| (e_value=2e-108) WOX3 protein [Petunia x hybrida];; (*SWP) sp|Q9SIB4|WOX3_ARATH (e_value=2e-38) WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana GN=WOX3 PE=2 SV=1;; (*TAIR) AT2G28610.1 (e_value=2e-39) | Symbols: PRS, WOX3, PRS1 | Homeodomain-like superfamily protein | chr2:12262115-12263286 FORWARD LENGTH=244;; (*ITAG) Solyc11g072790.1.1 (e_value=3e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53074783-53075974 transcript_region:SL2.40ch11:53074783..53075974+ go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox 3B (AHRD V1 *-*- A8Y7Y2_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00017077g0017.1 protein AED:0.07 eAED:0.07 QI:1024|1|1|1|0.66|0.5|4|344|301; (*GB) gi|225427140|ref|XP_002278687.1| (e_value=2e-70) PREDICTED: uncharacterized protein LOC100252266 [Vitis vinifera];; (*TAIR) AT5G46850.3 (e_value=4e-53) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). | chr5:19010852-19012010 FORWARD LENGTH=299;; (*ITAG) Solyc08g076570.2.1 (e_value=3e-145) genomic_reference:SL2.40ch08 gene_region:57702045-57704680 transcript_region:SL2.40ch08:57702045..57704680- go_terms:GO:0005789 functional_description:"Phosphatidylinositol-glycan biosynthesis class X protein (AHRD V1 **-- PIGX_HUMAN); contains Interpro domain(s) IPR013233 PIG-X/PBN1 "; GO:0005789 NbS00017077g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|76; (*ITAG) Solyc01g017760.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017077g0019.1 protein AED:0.13 eAED:0.22 QI:0|0|0|1|0|0|3|0|317; (*GB) gi|225447917|ref|XP_002267176.1| (e_value=2e-42) PREDICTED: mitogen-activated protein kinase kinase kinase 2 [Vitis vinifera];; (*SWP) sp|Q9Y6R4|M3K4_HUMAN (e_value=2e-24) Mitogen-activated protein kinase kinase kinase 4 OS=Homo sapiens GN=MAP3K4 PE=1 SV=2;; (*TAIR) AT3G50310.1 (e_value=3e-37) | Symbols: MAPKKK20 | mitogen-activated protein kinase kinase kinase 20 | chr3:18648296-18649324 REVERSE LENGTH=342;; (*ITAG) Solyc08g076490.2.1 (e_value=9e-128) genomic_reference:SL2.40ch08 gene_region:57660690-57663299 transcript_region:SL2.40ch08:57660690..57663299- go_terms:GO:0042803 functional_description:"Protein kinase-like protein (AHRD V1 ***- Q9SND6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042803 NbS00003177g0121.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.25|1|0.66|0.5|4|0|119 NbS00003177g0113.1 protein AED:0.28 eAED:0.28 QI:68|0.5|0.57|1|1|1|7|433|487 NbS00003177g0119.1 protein AED:0.35 eAED:0.40 QI:0|0|0|0.8|0|0.4|5|0|205 NbS00003177g0120.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.66|0.5|0.33|3|0|100 NbS00003177g0104.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|1305|618 NbS00003177g0117.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0|2|0|759 NbS00003806g0010.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|0|0.5|2|0|466; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=0.0) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=0.0) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=0.0) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00003806g0002.1 protein AED:0.34 eAED:0.34 QI:0|1|0.5|1|1|1|2|239|148; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=1e-97) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=3e-99) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=5e-88) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=2e-100) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00033395g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|451; (*GB) gi|62241069|dbj|BAD93691.1| (e_value=0.0) malonyltransferase [Nicotiana tabacum];; (*SWP) sp|Q8W1W9|5MAT1_SALSN (e_value=3e-121) Malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase OS=Salvia splendens GN=5MAT1 PE=1 SV=1;; (*TAIR) AT1G03495.1 (e_value=4e-80) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:873436-874832 FORWARD LENGTH=465;; (*ITAG) Solyc10g008680.1.1 (e_value=9e-161) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2759699-2761076 transcript_region:SL2.40ch10:2759699..2761076+ go_terms:GO:0050736 functional_description:"Malonyl CoA anthocyanin 3-O-glucoside-6&apos&apos-O-malonyltransferase (AHRD V1 **-* Q8GSN8_9ASTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050736 NbS00008934g0001.1 protein AED:0.17 eAED:0.18 QI:0|1|0.75|1|1|1|4|0|241; (*GB) gi|356497961|ref|XP_003517824.1| (e_value=2e-71) PREDICTED: putative SNAP25 homologous protein SNAP30-like [Glycine max];; (*SWP) sp|Q9LMG8|SNP30_ARATH (e_value=2e-72) Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=2 SV=1;; (*TAIR) AT1G13890.1 (e_value=1e-73) | Symbols: SNAP30, ATSNAP30 | soluble N-ethylmaleimide-sensitive factor adaptor protein 30 | chr1:4751581-4752844 FORWARD LENGTH=263;; (*ITAG) Solyc05g012520.2.1 (e_value=2e-114) genomic_reference:SL2.40ch05 gene_region:5769322-5771346 transcript_region:SL2.40ch05:5769322..5771346+ go_terms:GO:0005484 functional_description:"Synaptosomal-associated protein 30 (AHRD V1 ***- D7KQK9_ARALY); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00013785g0004.1 protein AED:0.12 eAED:0.12 QI:123|0.63|0.66|0.91|0.63|0.58|12|926|410; (*GB) gi|359492027|ref|XP_002282806.2| (e_value=1e-78) PREDICTED: uncharacterized protein LOC100257562 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=2e-44) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc04g078810.2.1 (e_value=3e-101) genomic_reference:SL2.40ch04 gene_region:61065866-61070598 transcript_region:SL2.40ch04:61065866..61070598- functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbC23619549g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|72; (*GB) gi|288550932|gb|ADC53072.1| (e_value=6e-46) actin [Cucurbita pepo];; (*SWP) sp|P24902|ACT_PINCO (e_value=2e-47) Actin (Fragment) OS=Pinus contorta PE=3 SV=1;; (*TAIR) AT5G09810.1 (e_value=1e-45) | Symbols: ACT7 | actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377;; (*ITAG) Solyc11g005330.1.1 (e_value=8e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:263971-265417 transcript_region:SL2.40ch11:263971..265417- go_terms:GO:0005515,GO:0005524 functional_description:"Actin (AHRD V1 ***- Q7XZK0_GOSHI); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005515,GO:0005524 NbS00004079g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.25|1|1|1|4|0|348; (*GB) gi|225438720|ref|XP_002282548.1| (e_value=4e-112) PREDICTED: uncharacterized protein LOC100252502 [Vitis vinifera];; (*TAIR) AT1G45207.2 (e_value=1e-65) | Symbols: | Remorin family protein | chr1:17130703-17133548 REVERSE LENGTH=555;; (*ITAG) Solyc02g090900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46960637-46963741 transcript_region:SL2.40ch02:46960637..46963741+ functional_description:"Remorin (AHRD V1 ***- Q00M66_SOYBN); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00004079g0002.1 protein AED:0.32 eAED:0.34 QI:0|0.75|0.76|0.92|1|1|13|874|411; (*GB) gi|359480888|ref|XP_002282572.2| (e_value=6e-162) PREDICTED: uncharacterized RNA-binding protein C660.15-like isoform 1 [Vitis vinifera];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=1e-25) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT4G36960.2 (e_value=2e-145) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:17427349-17429589 FORWARD LENGTH=379;; (*ITAG) Solyc02g090910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46964307-46971505 transcript_region:SL2.40ch02:46964307..46971505- go_terms:GO:0008266 functional_description:"RNA-binding like protein (AHRD V1 **-* O23189_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00025736g0004.1 protein AED:0.28 eAED:0.28 QI:605|0.91|0.84|1|0.83|0.76|13|359|356; (*GB) gi|304368145|gb|ADM26718.1| (e_value=0.0) glycolate oxidase [Nicotiana benthamiana];; (*SWP) sp|P05414|GOX_SPIOL (e_value=0.0) Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G14420.2 (e_value=0.0) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821804-4823899 FORWARD LENGTH=367;; (*ITAG) Solyc07g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61655287-61658877 transcript_region:SL2.40ch07:61655287..61658877+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0S8Q7_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00048698g0011.1 protein AED:0.32 eAED:0.32 QI:0|0.9|0.72|0.90|0.7|0.72|11|0|370; (*GB) gi|224108448|ref|XP_002314850.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZSY2|DNJ15_ARATH (e_value=0.0) Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1;; (*TAIR) AT1G68370.1 (e_value=0.0) | Symbols: ARG1 | Chaperone DnaJ-domain superfamily protein | chr1:25632046-25634527 REVERSE LENGTH=410;; (*ITAG) Solyc04g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1065839-1072643 transcript_region:SL2.40ch04:1065839..1072643- go_terms:GO:0008092 functional_description:"Chaperone protein dnaJ 15 (AHRD V1 ***- B4FR07_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0008092 NbS00048698g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|78; (*ITAG) Solyc04g007360.1.1 (e_value=3e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:1064255-1064752 transcript_region:SL2.40ch04:1064255..1064752+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000715g0006.1 protein AED:0.14 eAED:0.14 QI:218|1|1|1|0.5|0.33|3|160|100; (*GB) gi|21593449|gb|AAM65416.1| (e_value=2e-32) unknown [Arabidopsis thaliana];; (*SWP) sp|A5VFP2|ACYP_SPHWW (e_value=2e-21) Acylphosphatase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=acyP PE=3 SV=1;; (*TAIR) AT5G03370.1 (e_value=1e-33) | Symbols: | acylphosphatase family | chr5:825798-827020 REVERSE LENGTH=171; NbS00000715g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0|0.75|0.33|0.5|4|0|245; (*GB) gi|255556922|ref|XP_002519494.1| (e_value=4e-49) acylphosphatase, putative [Ricinus communis];; (*SWP) sp|A5VFP2|ACYP_SPHWW (e_value=2e-23) Acylphosphatase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=acyP PE=3 SV=1;; (*TAIR) AT5G03370.1 (e_value=3e-43) | Symbols: | acylphosphatase family | chr5:825798-827020 REVERSE LENGTH=171; NbS00000715g0202.1 protein AED:0.07 eAED:0.09 QI:0|1|0.66|1|1|1|3|242|635 NbS00000715g0209.1 protein AED:0.19 eAED:0.19 QI:0|0.75|0.4|0.8|1|1|5|0|388 NbS00000715g0210.1 protein AED:0.41 eAED:0.44 QI:0|0.2|0.33|0.83|0.2|0|6|0|254 NbS00043260g0003.1 protein AED:0.34 eAED:0.42 QI:0|0|0|1|0|0|2|0|129; (*ITAG) Solyc02g087510.2.1 (e_value=9e-57) genomic_reference:SL2.40ch02 gene_region:44505162-44507429 transcript_region:SL2.40ch02:44505162..44507429- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-2 (AHRD V1 *-** KS6A2_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00051682g0003.1 protein AED:0.13 eAED:0.14 QI:776|0.72|0.65|1|0.59|0.52|23|255|1477; (*GB) gi|68300844|gb|AAY89360.1| (e_value=0.0) RNA polymerase IV largest subunit [Solanum lycopersicum];; (*SWP) sp|Q9LQ02|NRPD1_ARATH (e_value=0.0) DNA-directed RNA polymerase D subunit 1 OS=Arabidopsis thaliana GN=NRPD1 PE=1 SV=1;; (*TAIR) AT1G63020.2 (e_value=0.0) | Symbols: NRPD1A | nuclear RNA polymerase D1A | chr1:23355329-23361126 REVERSE LENGTH=1453;; (*ITAG) Solyc08g080210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60700882-60708083 transcript_region:SL2.40ch08:60700882..60708083- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9GKP9_POPTR); contains Interpro domain(s) IPR000722 RNA polymerase, alpha subunit "; GO:0006350 NbS00009227g0002.1 protein AED:0.06 eAED:0.10 QI:0|0.66|0.5|1|1|1|4|0|360; (*GB) gi|255585731|ref|XP_002533547.1| (e_value=7e-19) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc09g009760.1.1 (e_value=5e-97) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3241071-3246743 transcript_region:SL2.40ch09:3241071..3246743- go_terms:GO:0006355 functional_description:"Z-box binding factor 2 protein (AHRD V1 *-*- Q5K1L6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00052949g0004.1 protein AED:0.23 eAED:0.23 QI:461|0.75|1|1|0.75|0.8|5|49|154; (*GB) gi|225450778|ref|XP_002279467.1| (e_value=2e-69) PREDICTED: uncharacterized protein LOC100244341 [Vitis vinifera];; (*TAIR) AT5G27710.1 (e_value=9e-67) | Symbols: | unknown protein; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:9813069-9815018 FORWARD LENGTH=335;; (*ITAG) Solyc01g099700.2.1 (e_value=7e-77) genomic_reference:SL2.40ch01 gene_region:81626226-81632773 transcript_region:SL2.40ch01:81626226..81632773+ functional_description:"Os07g0673000 protein (Fragment) (AHRD V1 ***- Q0D3Q5_ORYSJ)"; NbS00021906g0006.1 protein AED:0.01 eAED:0.01 QI:97|1|1|1|1|1|2|167|180; (*GB) gi|4105137|gb|AAD02270.1| (e_value=2e-105) putative vetispiradiene synthase 5 [Solanum tuberosum];; (*SWP) sp|Q9XJ32|VTSS1_SOLTU (e_value=2e-105) Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=8e-39) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101180.2.1 (e_value=9e-108) genomic_reference:SL2.40ch01 gene_region:82781170-82783261 transcript_region:SL2.40ch01:82781170..82783261+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00021906g0002.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.2|1|1|1|5|446|350; (*GB) gi|225450448|ref|XP_002276424.1| (e_value=2e-83) PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera];; (*ITAG) Solyc05g053200.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62466099-62469667 transcript_region:SL2.40ch05:62466099..62469667+ go_terms:GO:0008270,GO:0005622 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FI74_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270,GO:0005622 NbS00060288g0001.1 protein AED:0.15 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|296085145|emb|CBI28640.3| (e_value=4e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G04310.1 (e_value=5e-18) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1141581-1142528 REVERSE LENGTH=269;; (*ITAG) Solyc04g050270.1.1 (e_value=1e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:45673983-45674459 transcript_region:SL2.40ch04:45673983..45674459- functional_description:"Unknown Protein (AHRD V1)"; NbS00061097g0003.1 protein AED:0.07 eAED:0.07 QI:195|1|0.88|1|0.75|0.77|9|286|487; (*GB) gi|255556450|ref|XP_002519259.1| (e_value=0.0) poly(A) polymerase, putative [Ricinus communis];; (*SWP) sp|Q54J73|PAP_DICDI (e_value=3e-59) Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1;; (*TAIR) AT3G06560.1 (e_value=2e-165) | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507;; (*ITAG) Solyc12g099180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64761260-64764107 transcript_region:SL2.40ch12:64761260..64764107+ go_terms:GO:0005634,GO:0006350,GO:0031123 functional_description:"Poly(A) polymerase (AHRD V1 ***- Q7XJ92_ARATH); contains Interpro domain(s) IPR007012 Poly(A) polymerase, central region "; GO:0005634,GO:0006350,GO:0031123 NbS00013270g0005.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|1|0.66|3|0|165; (*GB) gi|224105051|ref|XP_002313667.1| (e_value=6e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=7e-42) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=5e-43) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067170.1.1 (e_value=4e-74) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49997393-50003008 transcript_region:SL2.40ch11:49997393..50003008- go_terms:GO:0008152 functional_description:"Fatty acyl coA reductase (AHRD V1 ***- Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0008152 NbS00013270g0004.1 protein AED:0.55 eAED:0.57 QI:0|0|0|1|1|1|3|0|171; (*GB) gi|301153923|gb|ADK66305.1| (e_value=1e-14) gland-specific fatty acyl-CoA reductase 1 [Artemisia annua];; (*SWP) sp|Q9FMQ9|FACR7_ARATH (e_value=3e-14) Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1;; (*TAIR) AT5G22420.1 (e_value=2e-15) | Symbols: FAR7 | fatty acid reductase 7 | chr5:7429903-7432586 FORWARD LENGTH=409;; (*ITAG) Solyc11g067180.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50014211-50020961 transcript_region:SL2.40ch11:50014211..50020961- go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00037224g0005.1 protein AED:0.24 eAED:0.24 QI:455|0.75|0.88|1|1|1|9|552|328; (*GB) gi|225458958|ref|XP_002285550.1| (e_value=9e-132) PREDICTED: inositol-tetrakisphosphate 1-kinase 2 [Vitis vinifera];; (*SWP) sp|Q9SUG3|ITPK2_ARATH (e_value=2e-122) Inositol-tetrakisphosphate 1-kinase 2 OS=Arabidopsis thaliana GN=ITPK2 PE=2 SV=2;; (*TAIR) AT4G08170.2 (e_value=2e-123) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr4:5163707-5167000 REVERSE LENGTH=353;; (*ITAG) Solyc12g088200.1.1 (e_value=9e-167) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62086971-62091994 transcript_region:SL2.40ch12:62086971..62091994+ go_terms:GO:0047325,GO:0005622 functional_description:"Inositol-tetrakisphosphate 1-kinase 3 (AHRD V1 ***- B4FHJ7_MAIZE); contains Interpro domain(s) IPR017427 Inositol-tetrakisphosphate 1-kinase "; GO:0047325,GO:0005622 NbS00011522g0002.1 protein AED:0.40 eAED:0.81 QI:107|0|0.5|1|0|0.5|2|18|90 NbS00011522g0005.1 protein AED:0.38 eAED:0.38 QI:111|0.6|0.66|1|0.4|0.5|6|195|139; (*GB) gi|225438097|ref|XP_002277335.1| (e_value=2e-67) PREDICTED: serine/threonine-protein kinase 19 [Vitis vinifera];; (*TAIR) AT2G20495.1 (e_value=7e-48) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:8833180-8835034 FORWARD LENGTH=282;; (*ITAG) Solyc06g008350.2.1 (e_value=4e-78) genomic_reference:SL2.40ch06 gene_region:2221135-2228530 transcript_region:SL2.40ch06:2221135..2228530+ functional_description:"Serine/threonine-protein kinase 19 (AHRD V1 ***- B6TW02_MAIZE); contains Interpro domain(s) IPR018865 Serine-threonine protein kinase 19 "; NbS00015409g0021.1 protein AED:0.27 eAED:0.27 QI:72|1|1|1|0.6|0.33|6|257|256; (*GB) gi|624925|dbj|BAA05170.1| (e_value=2e-77) RNA-binding glycine rich protein [Nicotiana sylvestris];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=1e-37) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G61030.1 (e_value=6e-48) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00015409g0004.1 protein AED:0.33 eAED:0.34 QI:612|0.81|0.75|1|0.72|0.75|12|0|479; (*GB) gi|356556468|ref|XP_003546547.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g17430-like [Glycine max];; (*SWP) sp|Q9LRP2|PT317_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=2 SV=1;; (*TAIR) AT3G17430.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:5966597-5968962 FORWARD LENGTH=375;; (*ITAG) Solyc02g066910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31748752-31756949 transcript_region:SL2.40ch02:31748752..31756949+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00015409g0024.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.75|1|0.85|0.87|8|105|512; (*GB) gi|359489023|ref|XP_002279181.2| (e_value=4e-136) PREDICTED: uncharacterized protein LOC100247426 [Vitis vinifera];; (*TAIR) AT3G01015.1 (e_value=1e-108) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr3:1798-4017 REVERSE LENGTH=488;; (*ITAG) Solyc02g066980.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31816604-31819658 transcript_region:SL2.40ch02:31816604..31819658- functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *-*- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00015409g0019.1 protein AED:0.15 eAED:0.15 QI:0|0.62|0.66|0.88|0.75|0.88|9|116|641; (*GB) gi|356567084|ref|XP_003551753.1| (e_value=1e-95) PREDICTED: uncharacterized protein LOC100798813 [Glycine max];; (*TAIR) AT5G15510.1 (e_value=2e-83) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:5034120-5036614 FORWARD LENGTH=497;; (*ITAG) Solyc02g066980.1.1 (e_value=1e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31816604-31819658 transcript_region:SL2.40ch02:31816604..31819658- functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *-*- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00015409g0023.1 protein AED:0.24 eAED:0.25 QI:173|0.9|0.63|1|0.7|0.72|11|0|511; (*GB) gi|359488525|ref|XP_003633772.1| (e_value=1e-148) PREDICTED: protein RIK-like [Vitis vinifera];; (*SWP) sp|Q9LIA4|RIK_ARATH (e_value=3e-114) Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2;; (*TAIR) AT3G29390.1 (e_value=2e-115) | Symbols: RIK | RS2-interacting KH protein | chr3:11289675-11294524 FORWARD LENGTH=578;; (*ITAG) Solyc02g066940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31764736-31772294 transcript_region:SL2.40ch02:31764736..31772294- go_terms:GO:0003723 functional_description:"Splicing factor -like RNA-binding domain protein (AHRD V1 *--* C7SB52_PLADU)"; GO:0003723 NbS00015409g0022.1 protein AED:0.47 eAED:0.47 QI:0|1|0|1|1|1|2|0|80; (*ITAG) Solyc02g066940.2.1 (e_value=7e-22) genomic_reference:SL2.40ch02 gene_region:31764736-31772294 transcript_region:SL2.40ch02:31764736..31772294- go_terms:GO:0003723 functional_description:"Splicing factor -like RNA-binding domain protein (AHRD V1 *--* C7SB52_PLADU)"; GO:0003723 NbS00022847g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|30013671|gb|AAP03878.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum];; (*SWP) sp|Q9S9X4|FBL8_ARATH (e_value=3e-143) Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1;; (*TAIR) AT4G07400.1 (e_value=2e-144) | Symbols: VFB3 | VIER F-box proteine 3 | chr4:4197847-4199511 REVERSE LENGTH=554;; (*ITAG) Solyc02g092990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:48531618-48533270 transcript_region:SL2.40ch02:48531618..48533270+ go_terms:GO:0004842 functional_description:"SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00007068g0003.1 protein AED:0.02 eAED:0.02 QI:77|1|1|1|1|1|2|408|152; (*GB) gi|255553389|ref|XP_002517736.1| (e_value=1e-81) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=7e-78) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=8e-57) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc03g059160.1.1 (e_value=6e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:25212208-25219003 transcript_region:SL2.40ch03:25212208..25219003+ functional_description:"CASTOR protein (Fragment) (AHRD V1 ***- Q1A3R7_SOYBN)"; NbS00007068g0015.1 protein AED:0.17 eAED:0.19 QI:67|0.73|0.43|0.87|0.53|0.62|16|0|747; (*GB) gi|225434137|ref|XP_002274786.1| (e_value=0.0) PREDICTED: ion channel CASTOR-like [Vitis vinifera];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=0.0) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc10g044890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24351349-24359299 transcript_region:SL2.40ch10:24351349..24359299+ go_terms:GO:0008152 functional_description:"DMI1 protein (Fragment) (AHRD V1 *-*- A9DNI2_MEDTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00007068g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|0.66|0|0.66|3|0|110; (*GB) gi|147766810|emb|CAN67532.1| (e_value=8e-28) hypothetical protein VITISV_019583 [Vitis vinifera];; (*TAIR) AT3G59780.1 (e_value=3e-26) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:22086906-22090324 FORWARD LENGTH=686;; (*ITAG) Solyc03g059170.2.1 (e_value=2e-42) genomic_reference:SL2.40ch03 gene_region:25219059-25225392 transcript_region:SL2.40ch03:25219059..25225392- functional_description:"Unknown Protein (AHRD V1)"; NbS00058020g0003.1 protein AED:0.05 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|101; (*ITAG) Solyc07g064860.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:64067319-64068313 transcript_region:SL2.40ch07:64067319..64068313+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058917g0001.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|103 NbS00058917g0002.1 protein AED:0.36 eAED:0.50 QI:0|0|0|1|0|0|2|0|103; (*GB) gi|85068626|gb|ABC69393.1| (e_value=8e-25) CYP72A55v2 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=2e-16) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*ITAG) Solyc07g055550.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60857157-60860735 transcript_region:SL2.40ch07:60857157..60860735- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007488g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|206; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=3e-54) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-43) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G25260.1 (e_value=1e-44) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12936005-12936610 REVERSE LENGTH=201;; (*ITAG) Solyc01g091100.2.1 (e_value=4e-105) genomic_reference:SL2.40ch01 gene_region:76575646-76576533 transcript_region:SL2.40ch01:76575646..76576533- go_terms:GO:0046910 functional_description:"Pectinesterase (AHRD V1 **** B7SIX2_9CONI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00007488g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|225453991|ref|XP_002280585.1| (e_value=7e-53) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=9e-40) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=7e-41) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc01g091110.2.1 (e_value=5e-102) genomic_reference:SL2.40ch01 gene_region:76583261-76584010 transcript_region:SL2.40ch01:76583261..76584010- go_terms:GO:0046910 functional_description:"Pectinesterase/pectinesterase inhibitor 3 (AHRD V1 **** PME3_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00007488g0017.1 protein AED:0.08 eAED:0.08 QI:158|0.86|0.93|1|0.93|0.87|16|198|1242; (*GB) gi|359489443|ref|XP_002274584.2| (e_value=0.0) PREDICTED: tubulin-specific chaperone D isoform 1 [Vitis vinifera];; (*SWP) sp|Q9BTW9|TBCD_HUMAN (e_value=7e-171) Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2;; (*TAIR) AT3G60740.1 (e_value=0.0) | Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254;; (*ITAG) Solyc01g091080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76559722-76569026 transcript_region:SL2.40ch01:76559722..76569026- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone D (AHRD V1 **** C0H9S8_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00007488g0003.1 protein AED:0.21 eAED:0.18 QI:0|1|0.75|1|1|1|8|303|287; (*GB) gi|224068394|ref|XP_002302735.1| (e_value=4e-130) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2YDC9|PDCD2_BOVIN (e_value=1e-48) Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1;; (*TAIR) AT4G02220.1 (e_value=4e-120) | Symbols: | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418;; (*ITAG) Solyc08g076440.2.1 (e_value=7e-131) genomic_reference:SL2.40ch08 gene_region:57613660-57618139 transcript_region:SL2.40ch08:57613660..57618139+ go_terms:GO:0005515 functional_description:"Programmed cell death protein 2 (AHRD V1 ***- B6TEZ7_MAIZE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0005515 NbS00007488g0019.1 protein AED:0.25 eAED:0.26 QI:0|0.9|0.81|1|0.8|0.90|11|462|264; (*GB) gi|225453987|ref|XP_002274528.1| (e_value=4e-156) PREDICTED: methionine aminopeptidase 1A [Vitis vinifera];; (*SWP) sp|Q9SLN5|AMP1A_ARATH (e_value=1e-150) Methionine aminopeptidase 1A OS=Arabidopsis thaliana GN=MAP1A PE=2 SV=1;; (*TAIR) AT2G45240.1 (e_value=1e-151) | Symbols: MAP1A | methionine aminopeptidase 1A | chr2:18656059-18658906 FORWARD LENGTH=398;; (*ITAG) Solyc01g091070.2.1 (e_value=8e-165) genomic_reference:SL2.40ch01 gene_region:76550313-76559336 transcript_region:SL2.40ch01:76550313..76559336+ go_terms:GO:0006508,GO:0009987 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9RD92_RICCO); contains Interpro domain(s) IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 "; GO:0006508,GO:0009987 NbS00044056g0001.1 protein AED:0.00 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|225432346|ref|XP_002276452.1| (e_value=1e-62) PREDICTED: ethylene-responsive transcription factor ERF086-like [Vitis vinifera];; (*SWP) sp|Q6J9Q2|ERF86_ARATH (e_value=9e-52) Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=2;; (*TAIR) AT5G18560.1 (e_value=7e-53) | Symbols: PUCHI | Integrase-type DNA-binding superfamily protein | chr5:6164859-6165905 REVERSE LENGTH=348;; (*ITAG) Solyc01g067540.1.1 (e_value=2e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:68687673-68688638 transcript_region:SL2.40ch01:68687673..68688638+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 12 (AHRD V1 *-*- C0J9I3_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00044056g0007.1 protein AED:0.22 eAED:0.22 QI:152|0.85|0.75|1|0.85|0.75|8|0|580; (*GB) gi|225432344|ref|XP_002276435.1| (e_value=1e-172) PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis vinifera];; (*SWP) sp|Q6NPN3|C3H58_ARATH (e_value=1e-125) Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1;; (*TAIR) AT5G18550.1 (e_value=8e-127) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:6160515-6162729 FORWARD LENGTH=465;; (*ITAG) Solyc01g067550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68690543-68697003 transcript_region:SL2.40ch01:68690543..68697003- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 58 (AHRD V1 ***- C3H58_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00044056g0006.1 protein AED:0.38 eAED:0.46 QI:0|0|0.5|1|0|0|2|6|84 NbS00016236g0017.1 protein AED:0.18 eAED:0.18 QI:60|0.4|0.33|1|0.6|0.66|6|106|305; (*GB) gi|147857702|emb|CAN80815.1| (e_value=5e-115) hypothetical protein VITISV_020466 [Vitis vinifera];; (*TAIR) AT2G17970.3 (e_value=7e-106) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:7819116-7820787 REVERSE LENGTH=433;; (*ITAG) Solyc02g062180.2.1 (e_value=1e-142) genomic_reference:SL2.40ch02 gene_region:28320935-28325265 transcript_region:SL2.40ch02:28320935..28325265- go_terms:GO:0016491 functional_description:"Oxidoreductase 2OG-Fe oxygenase family protein (AHRD V1 *--- B6ST02_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00016236g0015.1 protein AED:0.81 eAED:0.81 QI:57|0|0|0.25|1|1|4|0|57; (*ITAG) Solyc02g084020.2.1 (e_value=2e-15) genomic_reference:SL2.40ch02 gene_region:41817943-41822321 transcript_region:SL2.40ch02:41817943..41822321- go_terms:GO:0003729,GO:0019899 functional_description:"Small nuclear ribonucleoprotein Sm D3 (AHRD V1 ***- B6UDW2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0003729,GO:0019899 NbS00016236g0014.1 protein AED:0.04 eAED:0.04 QI:53|1|0.5|1|0|0.5|2|0|163; (*GB) gi|297735016|emb|CBI17378.3| (e_value=7e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G66230.1 (e_value=9e-23) | Symbols: | Chalcone-flavanone isomerase family protein | chr5:26462704-26463873 FORWARD LENGTH=329;; (*ITAG) Solyc02g083890.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:41718943-41720379 transcript_region:SL2.40ch02:41718943..41720379+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012893g0006.1 protein AED:0.04 eAED:0.04 QI:122|1|1|1|1|1|5|428|367; (*GB) gi|359487567|ref|XP_002277053.2| (e_value=0.0) PREDICTED: GDSL esterase/lipase At1g09390-like [Vitis vinifera];; (*SWP) sp|O80522|GDL2_ARATH (e_value=6e-178) GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1;; (*TAIR) AT1G09390.1 (e_value=5e-179) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:3031264-3033415 FORWARD LENGTH=370;; (*ITAG) Solyc01g100930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82588238-82591519 transcript_region:SL2.40ch01:82588238..82591519+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g09390 (AHRD V1 ***- GDL2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00012893g0009.1 protein AED:0.15 eAED:0.15 QI:0|1|0.85|1|0.66|0.85|7|0|347; (*GB) gi|296089819|emb|CBI39638.3| (e_value=3e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-52) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G09380.1 (e_value=1e-129) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:3026351-3029322 REVERSE LENGTH=374;; (*ITAG) Solyc01g100880.2.1 (e_value=7e-162) genomic_reference:SL2.40ch01 gene_region:82536275-82538541 transcript_region:SL2.40ch01:82536275..82538541- go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00008682g0003.1 protein AED:0.04 eAED:0.04 QI:171|1|1|1|1|1|5|752|385; (*GB) gi|225440538|ref|XP_002275792.1| (e_value=4e-83) PREDICTED: uncharacterized protein LOC100254537 [Vitis vinifera];; (*TAIR) AT3G54000.1 (e_value=1e-27) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996757-19998197 FORWARD LENGTH=352;; (*ITAG) Solyc09g011690.2.1 (e_value=1e-176) genomic_reference:SL2.40ch09 gene_region:4952573-4954426 transcript_region:SL2.40ch09:4952573..4954426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017804g0009.1 protein AED:0.14 eAED:0.14 QI:368|1|0.5|1|1|1|2|0|345; (*GB) gi|255567576|ref|XP_002524767.1| (e_value=0.0) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00017804g0010.1 protein AED:0.18 eAED:0.18 QI:156|0.5|0.4|1|0.75|0.6|5|0|319; (*GB) gi|255567586|ref|XP_002524772.1| (e_value=1e-101) LEC14B protein, putative [Ricinus communis];; (*SWP) sp|Q40153|LE14B_LITER (e_value=1e-95) LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1;; (*TAIR) AT4G03020.2 (e_value=4e-75) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493;; (*ITAG) Solyc06g008880.2.1 (e_value=1e-103) genomic_reference:SL2.40ch06 gene_region:2824969-2831802 transcript_region:SL2.40ch06:2824969..2831802+ go_terms:GO:0005112,GO:0042923 functional_description:"WD repeat protein 23 (AHRD V1 **-- B0WXG6_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005112,GO:0042923 NbS00017804g0012.1 protein AED:0.23 eAED:0.23 QI:367|1|0.5|1|1|1|2|0|345; (*GB) gi|255567576|ref|XP_002524767.1| (e_value=0.0) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00017804g0015.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0|0.33|3|0|178; (*GB) gi|2160185|gb|AAB60748.1| (e_value=1e-57) Similar to S. pombe ISP4 (gb|D83992) [Arabidopsis thaliana];; (*SWP) sp|O04514|OPT2_ARATH (e_value=5e-59) Oligopeptide transporter 2 OS=Arabidopsis thaliana GN=OPT2 PE=2 SV=2;; (*TAIR) AT1G09930.1 (e_value=4e-60) | Symbols: ATOPT2, OPT2 | oligopeptide transporter 2 | chr1:3227490-3230043 REVERSE LENGTH=734;; (*ITAG) Solyc04g076750.1.1 (e_value=3e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00049390g0002.1 protein AED:0.18 eAED:0.18 QI:226|0.8|0.90|1|0.9|0.81|11|251|358; (*GB) gi|255570653|ref|XP_002526281.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G01220.2 (e_value=0.0) | Symbols: | Nucleotidylyl transferase superfamily protein | chr2:123301-126213 FORWARD LENGTH=388;; (*ITAG) Solyc05g008870.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3092114-3100433 transcript_region:SL2.40ch05:3092114..3100433+ go_terms:GO:0009058 functional_description:"Cytidyltransferase-related (AHRD V1 **-- B4FI85_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0009058 NbS00038150g0003.1 protein AED:0.20 eAED:0.20 QI:81|1|1|1|1|1|6|345|395; (*GB) gi|255578162|ref|XP_002529950.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|C0LGH2|Y1561_ARATH (e_value=4e-109) Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2;; (*TAIR) AT1G16670.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:5697846-5699492 FORWARD LENGTH=390;; (*ITAG) Solyc10g005630.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:508414-511531 transcript_region:SL2.40ch10:508414..511531+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6SYF0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00042572g0004.1 protein AED:0.24 eAED:0.24 QI:0|0.92|0.85|1|0.84|0.85|14|0|666; (*GB) gi|350535511|ref|NP_001234198.1| (e_value=0.0) peroxisomal acyl-CoA oxidase 1A [Solanum lycopersicum];; (*SWP) sp|O65202|ACOX1_ARATH (e_value=0.0) Peroxisomal acyl-coenzyme A oxidase 1 OS=Arabidopsis thaliana GN=ACX1 PE=1 SV=1;; (*TAIR) AT4G16760.1 (e_value=0.0) | Symbols: ACX1, ATACX1 | acyl-CoA oxidase 1 | chr4:9424930-9428689 REVERSE LENGTH=664;; (*ITAG) Solyc08g078390.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59370516-59379975 transcript_region:SL2.40ch08:59370516..59379975+ go_terms:GO:0016401 functional_description:"Acyl-coenzyme A oxidase (AHRD V1 **** D7MCB8_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016401 NbC25684863g0005.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|3|0|497; (*GB) gi|224096143|ref|XP_002334714.1| (e_value=5e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42484|RPS2_ARATH (e_value=3e-15) Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1;; (*TAIR) AT4G26090.1 (e_value=2e-16) | Symbols: RPS2 | NB-ARC domain-containing disease resistance protein | chr4:13224596-13227325 FORWARD LENGTH=909;; (*ITAG) Solyc10g076440.1.1 (e_value=7e-152) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58743943-58746960 transcript_region:SL2.40ch10:58743943..58746960+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00024569g0003.1 protein AED:0.18 eAED:0.18 QI:114|1|0.66|1|1|1|3|0|366; (*GB) gi|295815790|gb|ADG36380.1| (e_value=8e-126) promoter-binding protein SPL9 [Vitis vinifera];; (*SWP) sp|Q9M2Q6|SPL15_ARATH (e_value=1e-48) Squamosa promoter-binding-like protein 15 OS=Arabidopsis thaliana GN=SPL15 PE=2 SV=1;; (*TAIR) AT3G57920.1 (e_value=7e-50) | Symbols: SPL15 | squamosa promoter binding protein-like 15 | chr3:21444450-21445852 REVERSE LENGTH=354;; (*ITAG) Solyc10g078700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59754038-59758728 transcript_region:SL2.40ch10:59754038..59758728- go_terms:GO:0003700 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B1_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00050057g0005.1 protein AED:0.17 eAED:0.17 QI:353|0.88|0.7|1|1|1|10|21|832; (*GB) gi|225458352|ref|XP_002281702.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100264365 [Vitis vinifera];; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=3e-35) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT1G75100.1 (e_value=4e-59) | Symbols: JAC1 | J-domain protein required for chloroplast accumulation response 1 | chr1:28191108-28193769 REVERSE LENGTH=651;; (*ITAG) Solyc04g080040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61925931-61931565 transcript_region:SL2.40ch04:61925931..61931565- go_terms:GO:0005515 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B6QFU5_PENMQ); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005515 NbS00050057g0006.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.66|1|1|1|6|0|850; (*GB) gi|359495248|ref|XP_002271456.2| (e_value=0.0) PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|P93422|SYH_ORYSJ (e_value=0.0) Histidine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os05g0150900 PE=2 SV=2;; (*TAIR) AT3G02760.1 (e_value=0.0) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:597588-600650 REVERSE LENGTH=883;; (*ITAG) Solyc01g102800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83261245-83268236 transcript_region:SL2.40ch01:83261245..83268236+ go_terms:GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 functional_description:"Histidyl-tRNA synthetase (AHRD V1 *-*- Q52NV4_HUMAN); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0006427,GO:0006412,GO:0005737,GO:0016887,GO:0003824 NbS00050057g0018.1 protein AED:0.30 eAED:0.30 QI:21|0.81|0.91|1|0.63|0.75|12|434|437; (*GB) gi|359485581|ref|XP_002274355.2| (e_value=0.0) PREDICTED: SPX and EXS domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q55B06|SPXS1_DICDI (e_value=3e-37) SPX and EXS domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0271664 PE=3 SV=2;; (*TAIR) AT5G35730.1 (e_value=0.0) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr5:13893941-13896821 FORWARD LENGTH=457;; (*ITAG) Solyc04g080050.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61932459-61945517 transcript_region:SL2.40ch04:61932459..61945517- go_terms:GO:0016021 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0016021 NbS00050057g0016.1 protein AED:0.32 eAED:0.32 QI:3|0.5|0|1|1|1|3|0|210; (*GB) gi|225458354|ref|XP_002283278.1| (e_value=1e-99) PREDICTED: UPF0326 protein At4g17486 [Vitis vinifera];; (*SWP) sp|Q93VG8|PPDEX_ARATH (e_value=3e-39) DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1;; (*TAIR) AT1G47740.2 (e_value=3e-85) | Symbols: | PPPDE putative thiol peptidase family protein | chr1:17567903-17569035 FORWARD LENGTH=279;; (*ITAG) Solyc04g080030.2.1 (e_value=9e-115) genomic_reference:SL2.40ch04 gene_region:61915022-61918270 transcript_region:SL2.40ch04:61915022..61918270- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00050057g0017.1 protein AED:0.31 eAED:0.31 QI:0|1|1|1|1|1|7|0|370; (*GB) gi|224137214|ref|XP_002327070.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BYI6|PCAT2_MOUSE (e_value=2e-33) Lysophosphatidylcholine acyltransferase 2 OS=Mus musculus GN=Lpcat2 PE=1 SV=1;; (*TAIR) AT1G80950.1 (e_value=1e-161) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:30412653-30414935 REVERSE LENGTH=398;; (*ITAG) Solyc04g080020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61907518-61914553 transcript_region:SL2.40ch04:61907518..61914553+ go_terms:GO:0008152 functional_description:"Acyltransferase family protein (AHRD V1 ***- Q22SV8_TETTH); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0008152 NbS00001277g0018.1 protein AED:0.20 eAED:0.20 QI:294|1|0.9|1|0.66|0.7|10|0|1094; (*GB) gi|255572207|ref|XP_002527043.1| (e_value=0.0) Ran GTPase binding protein, putative [Ricinus communis];; (*SWP) sp|Q4U2R1|HERC2_MOUSE (e_value=1e-51) E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc11g065120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47535935-47556450 transcript_region:SL2.40ch11:47535935..47556450+ go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbS00001277g0016.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0.5|2|0|320; (*GB) gi|225434953|ref|XP_002281058.1| (e_value=3e-156) PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Vitis vinifera];; (*SWP) sp|Q940Q2|PPR19_ARATH (e_value=1e-134) Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1;; (*TAIR) AT1G07590.1 (e_value=7e-136) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2336649-2338481 REVERSE LENGTH=534;; (*ITAG) Solyc06g071900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40683466-40686760 transcript_region:SL2.40ch06:40683466..40686760- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH37_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001277g0017.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|0.5|2|0|152; (*GB) gi|297746078|emb|CBI16134.3| (e_value=7e-50) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940Q2|PPR19_ARATH (e_value=3e-44) Pentatricopeptide repeat-containing protein At1g07590, mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2 SV=1;; (*TAIR) AT1G07590.1 (e_value=2e-45) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2336649-2338481 REVERSE LENGTH=534;; (*ITAG) Solyc06g071900.2.1 (e_value=7e-79) genomic_reference:SL2.40ch06 gene_region:40683466-40686760 transcript_region:SL2.40ch06:40683466..40686760- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH37_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001277g0019.1 protein AED:0.21 eAED:0.21 QI:123|1|1|1|1|1|3|590|74; (*GB) gi|224055317|ref|XP_002298477.1| (e_value=7e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07910.1 (e_value=2e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:2523367-2524048 REVERSE LENGTH=74;; (*ITAG) Solyc12g099710.1.1 (e_value=5e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:65082354-65085403 transcript_region:SL2.40ch12:65082354..65085403+ functional_description:"Chromosome 04 contig 1 DNA sequence (AHRD V1 *-*- Q01AI6_OSTTA); contains Interpro domain(s) IPR018450 Reactive oxygen species modulator 1 "; NbS00030645g0025.1 protein AED:0.13 eAED:0.13 QI:0|0|0.33|1|0|0.66|3|0|268; (*GB) gi|255567642|ref|XP_002524800.1| (e_value=2e-82) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9M8J2|GATL4_ARATH (e_value=2e-79) Probable galacturonosyltransferase-like 4 OS=Arabidopsis thaliana GN=GATL4 PE=2 SV=1;; (*TAIR) AT3G06260.1 (e_value=2e-80) | Symbols: GATL4 | galacturonosyltransferase-like 4 | chr3:1893804-1894859 REVERSE LENGTH=351;; (*ITAG) Solyc06g008910.2.1 (e_value=3e-114) genomic_reference:SL2.40ch06 gene_region:2846874-2848623 transcript_region:SL2.40ch06:2846874..2848623- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00030645g0005.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|6|0|666; (*GB) gi|224102555|ref|XP_002312723.1| (e_value=1e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WPJ7|RF298_ARATH (e_value=5e-46) Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1;; (*TAIR) AT4G03000.2 (e_value=4e-47) | Symbols: | RING/U-box superfamily protein | chr4:1324602-1327348 FORWARD LENGTH=814;; (*ITAG) Solyc06g008900.2.1 (e_value=4e-139) genomic_reference:SL2.40ch06 gene_region:2840267-2843968 transcript_region:SL2.40ch06:2840267..2843968- go_terms:GO:0008270 functional_description:"Inhibitor of apoptosis protein (AGAP011326-PA) (AHRD V1 *--- Q7QHS1_ANOGA); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00030645g0017.1 protein AED:0.26 eAED:0.27 QI:0|0.58|0.69|1|0.5|0.61|13|541|580; (*GB) gi|225437002|ref|XP_002277634.1| (e_value=0.0) PREDICTED: DNA repair helicase UVH6 [Vitis vinifera];; (*SWP) sp|Q8W4M7|ERCC2_ARATH (e_value=0.0) DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1;; (*TAIR) AT1G03190.2 (e_value=0.0) | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758;; (*ITAG) Solyc06g008970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2910891-2919396 transcript_region:SL2.40ch06:2910891..2919396- go_terms:GO:0043141 functional_description:"ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein "; GO:0043141 NbS00030645g0028.1 protein AED:0.14 eAED:0.14 QI:96|0.9|1|1|0.9|0.81|11|196|1296; (*GB) gi|359479864|ref|XP_002271735.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254459 [Vitis vinifera];; (*TAIR) AT3G23590.1 (e_value=0.0) | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467638-8473469 FORWARD LENGTH=1309;; (*ITAG) Solyc06g008960.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2881829-2894145 transcript_region:SL2.40ch06:2881829..2894145+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK7_CARAS)"; NbS00030645g0021.1 protein AED:0.25 eAED:0.27 QI:0|0.66|0.7|1|1|1|10|0|381; (*GB) gi|255567660|ref|XP_002524809.1| (e_value=0.0) elongation factor tu, putative [Ricinus communis];; (*SWP) sp|Q9ZT91|EFTM_ARATH (e_value=0.0) Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1;; (*TAIR) AT4G02930.1 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr4:1295751-1298354 REVERSE LENGTH=454;; (*ITAG) Solyc06g008940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2866762-2874822 transcript_region:SL2.40ch06:2866762..2874822+ go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** B9SFP0_RICCO); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00030645g0024.1 protein AED:0.22 eAED:0.27 QI:0|0|0|0.66|0|0|3|0|204; (*GB) gi|224145466|ref|XP_002336232.1| (e_value=9e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RVH5|7SBG2_SOYBN (e_value=3e-17) Basic 7S globulin 2 OS=Glycine max PE=1 SV=1;; (*TAIR) AT1G03230.1 (e_value=4e-42) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:790110-791414 FORWARD LENGTH=434;; (*ITAG) Solyc09g065000.2.1 (e_value=5e-48) genomic_reference:SL2.40ch09 gene_region:58274475-58276687 transcript_region:SL2.40ch09:58274475..58276687- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00014975g0005.1 protein AED:0.12 eAED:0.12 QI:199|1|1|1|1|1|3|153|329; (*GB) gi|255537982|ref|XP_002510056.1| (e_value=9e-39) conserved hypothetical protein [Ricinus communis]; NbS00014975g0008.1 protein AED:0.15 eAED:0.16 QI:0|0.88|0.84|1|0.88|0.84|19|0|873; (*GB) gi|302142166|emb|CBI19369.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q02224|CENPE_HUMAN (e_value=3e-107) Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2;; (*TAIR) AT1G59540.1 (e_value=0.0) | Symbols: ZCF125 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:21874083-21879382 FORWARD LENGTH=823;; (*ITAG) Solyc04g077540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60091311-60098741 transcript_region:SL2.40ch04:60091311..60098741- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9S7P3_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00031253g0001.1 protein AED:0.18 eAED:0.20 QI:59|0|0.5|1|0|0.5|2|0|427; (*GB) gi|147781938|emb|CAN67718.1| (e_value=1e-56) hypothetical protein VITISV_002357 [Vitis vinifera];; (*TAIR) AT1G35830.1 (e_value=2e-18) | Symbols: | VQ motif-containing protein | chr1:13321214-13322122 REVERSE LENGTH=302;; (*ITAG) Solyc04g073950.1.1 (e_value=2e-104) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:57556744-57558138 transcript_region:SL2.40ch04:57556744..57558138+ functional_description:"VQ motif family protein expressed (AHRD V1 *-*- Q10KE8_ORYSJ); contains Interpro domain(s) IPR008889 VQ "; NbS00006141g0011.1 protein AED:0.06 eAED:0.06 QI:93|1|1|1|1|1|7|83|494; (*GB) gi|147843096|emb|CAN81204.1| (e_value=8e-152) hypothetical protein VITISV_035443 [Vitis vinifera];; (*TAIR) AT3G63300.1 (e_value=5e-134) | Symbols: FKD1 | FORKED 1 | chr3:23385033-23387625 FORWARD LENGTH=498;; (*ITAG) Solyc09g065590.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59345026-59349449 transcript_region:SL2.40ch09:59345026..59349449+ go_terms:GO:0035091 functional_description:"Os12g0604200 protein (Fragment) (AHRD V1 *-*- Q0IM29_ORYSJ); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; GO:0035091 NbS00006141g0013.1 protein AED:0.02 eAED:0.07 QI:0|0.66|0.5|1|0.33|0.25|4|0|370; (*GB) gi|224066431|ref|XP_002302100.1| (e_value=6e-68) predicted protein [Populus trichocarpa];; (*TAIR) AT3G63290.1 (e_value=1e-53) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:23381713-23383059 FORWARD LENGTH=403;; (*ITAG) Solyc09g065580.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59328416-59331173 transcript_region:SL2.40ch09:59328416..59331173+ go_terms:GO:0006508 functional_description:"Unknown Protein (AHRD V1)"; GO:0006508 NbS00006141g0015.1 protein AED:0.13 eAED:0.13 QI:0|1|0.91|1|0.90|0.91|12|351|553; (*GB) gi|359479671|ref|XP_003632328.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase Nek2-like [Vitis vinifera];; (*SWP) sp|A2ZMH2|NEK2_ORYSI (e_value=0.0) Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica GN=NEK2 PE=2 SV=1;; (*TAIR) AT1G54510.3 (e_value=0.0) | Symbols: NEK1 | NIMA-related serine/threonine kinase 1 | chr1:20358603-20362006 REVERSE LENGTH=612;; (*ITAG) Solyc09g065570.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59323628-59327997 transcript_region:SL2.40ch09:59323628..59327997+ go_terms:GO:0016301 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00006141g0115.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|0.5|1|1|2|182|110 NbS00006141g0117.1 protein AED:0.23 eAED:0.46 QI:0|0.11|0|0.9|0.33|0.3|10|0|442 NbS00006141g0116.1 protein AED:0.65 eAED:0.74 QI:0|0|0|0.5|1|1|2|0|200 NbS00004035g0006.1 protein AED:0.14 eAED:0.14 QI:38|0.6|0.5|1|1|1|6|0|508; (*GB) gi|225456647|ref|XP_002270812.1| (e_value=0.0) PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera];; (*SWP) sp|Q9LV10|PTR53_ARATH (e_value=0.0) Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1;; (*TAIR) AT5G62680.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:25165430-25167822 REVERSE LENGTH=616;; (*ITAG) Solyc06g071570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40451690-40454562 transcript_region:SL2.40ch06:40451690..40454562+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00008428g0001.1 protein AED:0.28 eAED:0.54 QI:0|0|0|1|1|1|2|0|497; (*GB) gi|48209881|gb|AAT40487.1| (e_value=1e-108) putative disease resistance protein [Solanum demissum];; (*ITAG) Solyc05g007170.2.1 (e_value=3e-107) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00020356g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|87 NbS00016539g0018.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0.5|0.33|3|0|488; (*GB) gi|225437689|ref|XP_002279803.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264112 [Vitis vinifera];; (*TAIR) AT4G01870.1 (e_value=0.0) | Symbols: | tolB protein-related | chr4:808473-810431 REVERSE LENGTH=652;; (*ITAG) Solyc06g008620.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2517512-2519494 transcript_region:SL2.40ch06:2517512..2519494- functional_description:"Protein tolB (AHRD V1 *-*- D3SF14_THISK); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00016539g0019.1 protein AED:0.32 eAED:0.37 QI:0|0.5|0.45|0.90|0.4|0.54|11|0|392; (*GB) gi|225426218|ref|XP_002263667.1| (e_value=3e-158) PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera];; (*TAIR) AT1G64600.1 (e_value=5e-122) | Symbols: | methyltransferases;copper ion binding | chr1:23995996-23998625 FORWARD LENGTH=537;; (*ITAG) Solyc08g082880.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62705443-62710758 transcript_region:SL2.40ch08:62705443..62710758+ go_terms:GO:0006412,GO:0005507 functional_description:"Ribosomal small subunit Rsm22 (AHRD V1 *-*- D9TLZ5_CLOTS); contains Interpro domain(s) IPR015324 Ribosomal protein Rsm22, bacterial-type "; GO:0006412,GO:0005507 NbS00016539g0020.1 protein AED:0.13 eAED:0.13 QI:356|0.88|0.7|1|0.88|1|10|304|989; (*GB) gi|225437714|ref|XP_002273228.1| (e_value=0.0) PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=0.0) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=0.0) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc01g068100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00016539g0017.1 protein AED:0.46 eAED:0.62 QI:0|0|0|1|0|0|2|0|65; (*GB) gi|147767869|emb|CAN71280.1| (e_value=3e-16) hypothetical protein VITISV_027089 [Vitis vinifera];; (*TAIR) AT4G01870.1 (e_value=6e-18) | Symbols: | tolB protein-related | chr4:808473-810431 REVERSE LENGTH=652;; (*ITAG) Solyc06g008620.1.1 (e_value=9e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:2517512-2519494 transcript_region:SL2.40ch06:2517512..2519494- functional_description:"Protein tolB (AHRD V1 *-*- D3SF14_THISK); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00029909g0006.1 protein AED:0.19 eAED:0.19 QI:45|0.5|0.2|0.8|1|1|5|0|134; (*GB) gi|297744170|emb|CBI37140.3| (e_value=1e-60) unnamed protein product [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=2e-42) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT3G23340.1 (e_value=9e-54) | Symbols: ckl10 | casein kinase I-like 10 | chr3:8351047-8353791 FORWARD LENGTH=442;; (*ITAG) Solyc06g083830.2.1 (e_value=5e-65) genomic_reference:SL2.40ch06 gene_region:45418434-45430398 transcript_region:SL2.40ch06:45418434..45430398- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00029909g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|151 NbS00008233g0003.1 protein AED:0.26 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|211; (*ITAG) Solyc05g010220.1.1 (e_value=5e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4406522-4407694 transcript_region:SL2.40ch05:4406522..4407694+ functional_description:"F-box family protein (AHRD V1 ***- D7L723_ARALY); contains Interpro domain(s) IPR006527 F-box associated "; NbS00008233g0010.1 protein AED:0.10 eAED:0.10 QI:178|0.93|0.90|1|0.77|0.84|32|286|980; (*GB) gi|297737920|emb|CBI27121.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q91YE6|IPO9_MOUSE (e_value=3e-116) Importin-9 OS=Mus musculus GN=Ipo9 PE=1 SV=3;; (*TAIR) AT1G26170.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:9047539-9054438 REVERSE LENGTH=1022;; (*ITAG) Solyc05g010160.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4337028-4352097 transcript_region:SL2.40ch05:4337028..4352097+ go_terms:GO:0006886,GO:0005488,GO:0006355 functional_description:"Importin 9 (AHRD V1 ***- Q4G0B8_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488,GO:0006355 NbS00061924g0001.1 protein AED:0.37 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|81 NbS00007614g0010.1 protein AED:0.34 eAED:0.36 QI:0|0.72|0.68|0.89|0.88|0.89|19|66|721; (*GB) gi|255570069|ref|XP_002525997.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q68F38|VAC14_XENLA (e_value=6e-117) Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc05g017860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:18730429-18754023 transcript_region:SL2.40ch05:18730429..18754023- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00011728g0001.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|77; (*ITAG) Solyc01g008450.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2537806-2538639 transcript_region:SL2.40ch01:2537806..2538639- functional_description:"Unknown Protein (AHRD V1)"; NbS00052825g0001.1 protein AED:0.40 eAED:0.45 QI:0|1|0.5|1|0|0|2|350|77 NbS00020401g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|152; (*GB) gi|343796216|gb|AEM63544.1| (e_value=2e-84) dehydration-responsive element-binding protein DREB2 [Solanum tuberosum];; (*SWP) sp|Q9FH94|ERF10_ARATH (e_value=3e-53) Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1;; (*TAIR) AT5G67190.1 (e_value=3e-54) | Symbols: DEAR2 | DREB and EAR motif protein 2 | chr5:26809135-26809689 REVERSE LENGTH=184;; (*ITAG) Solyc04g078640.1.1 (e_value=1e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60925634-60926080 transcript_region:SL2.40ch04:60925634..60926080+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 5 (AHRD V1 *-*- EF102_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00032803g0004.1 protein AED:0.22 eAED:0.27 QI:0|0.5|0.28|1|0.5|0.71|7|0|285; (*GB) gi|293332789|ref|NP_001169463.1| (e_value=3e-106) uncharacterized protein LOC100383334 [Zea mays];; (*SWP) sp|P37287|PIGA_HUMAN (e_value=3e-32) Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1;; (*TAIR) AT3G45100.2 (e_value=2e-60) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=9e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00016185g0017.1 protein AED:0.33 eAED:0.36 QI:0|0.72|0.66|1|0.54|0.66|12|0|370; (*GB) gi|380853846|gb|AFE88230.1| (e_value=2e-118) beta-keto-ACP reductase [Nicotiana tabacum];; (*SWP) sp|P28643|FABG_CUPLA (e_value=2e-100) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1;; (*TAIR) AT1G24360.1 (e_value=5e-85) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc06g071910.2.1 (e_value=1e-126) genomic_reference:SL2.40ch06 gene_region:40687928-40693427 transcript_region:SL2.40ch06:40687928..40693427- go_terms:GO:0048038,GO:0070402,GO:0008753 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0048038,GO:0070402,GO:0008753 NbS00016185g0015.1 protein AED:0.22 eAED:0.37 QI:309|0.5|0.66|1|0|0|3|0|11 NbS00016185g0003.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|326; (*GB) gi|225456252|ref|XP_002279421.1| (e_value=2e-75) PREDICTED: uncharacterized protein LOC100244084 [Vitis vinifera];; (*TAIR) AT5G50360.1 (e_value=6e-45) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20505433-20506308 REVERSE LENGTH=291;; (*ITAG) Solyc03g111100.1.1 (e_value=5e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55819962-55820894 transcript_region:SL2.40ch03:55819962..55820894- functional_description:"AtIII18x5-like protein (Fragment) (AHRD V1 *-*- D9YU68_ARAHA)"; NbS00016185g0018.1 protein AED:0.30 eAED:0.34 QI:0|0.7|0.45|1|0.6|0.63|11|0|827; (*GB) gi|359491054|ref|XP_002279401.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: transcription factor GTE10-like [Vitis vinifera];; (*SWP) sp|Q9FGW9|GTE10_ARATH (e_value=2e-108) Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2;; (*TAIR) AT5G63320.1 (e_value=2e-109) | Symbols: NPX1 | nuclear protein X1 | chr5:25374413-25378783 REVERSE LENGTH=1061;; (*ITAG) Solyc03g111090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55799870-55806252 transcript_region:SL2.40ch03:55799870..55806252- go_terms:GO:0016564 functional_description:"Bromodomain factor (AHRD V1 *--- A7A1S4_YEAS7); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0016564 NbS00054623g0001.1 protein AED:0.26 eAED:0.27 QI:0|0.5|0.33|1|1|1|3|0|495; (*GB) gi|224105893|ref|XP_002313970.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGH4|E139_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1;; (*TAIR) AT5G58480.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23641227-23642826 REVERSE LENGTH=476;; (*ITAG) Solyc04g015190.2.1 (e_value=8e-147) genomic_reference:SL2.40ch04 gene_region:5371233-5375212 transcript_region:SL2.40ch04:5371233..5375212- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00018545g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|146; (*GB) gi|357509939|ref|XP_003625258.1| (e_value=3e-14) Seed maturation protein [Medicago truncatula];; (*SWP) sp|P46515|LEA11_HELAN (e_value=1e-14) 11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1;; (*TAIR) AT5G06760.1 (e_value=4e-13) | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 | chr5:2089754-2090313 REVERSE LENGTH=158;; (*ITAG) Solyc10g078780.1.1 (e_value=9e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59812629-59813683 transcript_region:SL2.40ch10:59812629..59813683- go_terms:GO:0009790 functional_description:"Seed maturation protein LEA 4 (AHRD V1 *-*- Q9FNW7_GLYTO); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00050453g0002.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|122; (*GB) gi|359478687|ref|XP_002282154.2| (e_value=1e-33) PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9ZUY1|PP173_ARATH (e_value=4e-22) Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2;; (*TAIR) AT2G27800.1 (e_value=3e-23) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11849789-11851351 REVERSE LENGTH=442;; (*ITAG) Solyc04g076370.2.1 (e_value=7e-50) genomic_reference:SL2.40ch04 gene_region:58867771-58873249 transcript_region:SL2.40ch04:58867771..58873249- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00050453g0003.1 protein AED:0.36 eAED:0.54 QI:0|0|0|1|0|0|2|0|122; (*GB) gi|224142259|ref|XP_002324476.1| (e_value=6e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUY1|PP173_ARATH (e_value=2e-34) Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2;; (*TAIR) AT2G27800.1 (e_value=1e-35) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11849789-11851351 REVERSE LENGTH=442;; (*ITAG) Solyc04g076370.2.1 (e_value=5e-53) genomic_reference:SL2.40ch04 gene_region:58867771-58873249 transcript_region:SL2.40ch04:58867771..58873249- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MSM5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058186g0004.1 protein AED:0.18 eAED:0.18 QI:186|1|1|1|1|1|2|105|161; (*GB) gi|118481894|gb|ABK92882.1| (e_value=2e-67) unknown [Populus trichocarpa];; (*SWP) sp|O49453|Y4844_ARATH (e_value=3e-61) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT4G28440.1 (e_value=2e-62) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr4:14060054-14060970 FORWARD LENGTH=153;; (*ITAG) Solyc02g077740.2.1 (e_value=9e-102) genomic_reference:SL2.40ch02 gene_region:37189312-37191744 transcript_region:SL2.40ch02:37189312..37191744- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00058186g0005.1 protein AED:0.36 eAED:0.36 QI:93|0.5|0.8|0.8|0.25|0.4|5|287|130; (*GB) gi|255536739|ref|XP_002509436.1| (e_value=8e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G28395.3 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:9970134-9971433 REVERSE LENGTH=95;; (*ITAG) Solyc02g077730.2.1 (e_value=8e-34) genomic_reference:SL2.40ch02 gene_region:37185838-37188452 transcript_region:SL2.40ch02:37185838..37188452+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045171g0004.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.6|1|0.75|0.8|5|310|377; (*GB) gi|4827253|dbj|BAA77603.1| (e_value=0.0) plastidic aldolase [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc01g110360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88844597-88847246 transcript_region:SL2.40ch01:88844597..88847246+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B0FPD8_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00016092g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.88|1|0.75|0.66|9|0|471; (*GB) gi|223630925|gb|ACI45550.2| (e_value=0.0) potassium channel [Nicotiana tabacum];; (*SWP) sp|P92960|KAT3_ARATH (e_value=0.0) Potassium channel KAT3 OS=Arabidopsis thaliana GN=KAT3 PE=1 SV=1;; (*TAIR) AT4G32650.3 (e_value=0.0) | Symbols: ATKC1, KAT3, KC1, AtLKT1 | potassium channel in Arabidopsis thaliana 3 | chr4:15751482-15754797 REVERSE LENGTH=661;; (*ITAG) Solyc01g010080.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4800229-4810748 transcript_region:SL2.40ch01:4800229..4810748+ go_terms:GO:0005242,GO:0030551 functional_description:"Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 (AHRD V1 **** HCN4_MOUSE); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242,GO:0030551 NbS00016092g0017.1 protein AED:0.23 eAED:0.23 QI:0|0.75|0.6|1|1|1|5|0|274; (*GB) gi|356523696|ref|XP_003530471.1| (e_value=4e-143) PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max];; (*SWP) sp|Q9FFW5|PERK8_ARATH (e_value=2e-125) Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1;; (*TAIR) AT5G38560.1 (e_value=2e-126) | Symbols: | Protein kinase superfamily protein | chr5:15439844-15443007 FORWARD LENGTH=681;; (*ITAG) Solyc01g010030.2.1 (e_value=4e-167) genomic_reference:SL2.40ch01 gene_region:4659289-4670004 transcript_region:SL2.40ch01:4659289..4670004- go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016092g0015.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.66|0|0.33|3|0|430; (*GB) gi|164431180|gb|ABY55856.1| (e_value=0.0) S-adenosylmethionine decarboxylase 3 [Solanum lycopersicum];; (*SWP) sp|O80402|DCAM_NICSY (e_value=0.0) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1;; (*TAIR) AT3G25570.2 (e_value=9e-167) | Symbols: | Adenosylmethionine decarboxylase family protein | chr3:9287413-9288462 REVERSE LENGTH=349;; (*ITAG) Solyc01g010050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4683610-4687162 transcript_region:SL2.40ch01:4683610..4687162+ go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00031058g0002.1 protein AED:0.80 eAED:0.83 QI:0|0|0|0.5|0.66|0.5|4|0|142 NbS00019595g0011.1 protein AED:0.47 eAED:0.50 QI:0|0.5|0.4|1|0.25|0.2|5|0|91; (*GB) gi|11036454|dbj|BAB17274.1| (e_value=2e-20) unnamed protein product [Arabidopsis thaliana];; (*TAIR) AT3G22290.1 (e_value=6e-23) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc00g030520.2.1 (e_value=9e-24) genomic_reference:SL2.40ch00 gene_region:12609573-12612502 transcript_region:SL2.40ch00:12609573..12612502- functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (Predicted) (AHRD V1 *-*- B1MTM4_CALMO); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; NbS00019595g0010.1 protein AED:0.38 eAED:0.40 QI:0|0.16|0.07|0.92|0.83|0.69|13|0|987; (*GB) gi|296086337|emb|CBI31778.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUW5|RH53_ARATH (e_value=1e-175) DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1;; (*TAIR) AT3G22330.1 (e_value=9e-177) | Symbols: PMH2, ATRH53 | putative mitochondrial RNA helicase 2 | chr3:7892641-7895145 FORWARD LENGTH=616;; (*ITAG) Solyc12g006320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:841803-847655 transcript_region:SL2.40ch12:841803..847655- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-*- Q6L724_HORVU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00055064g0007.1 protein AED:0.13 eAED:0.13 QI:265|0.66|0.57|1|0.66|0.85|7|229|519; (*GB) gi|224055665|ref|XP_002298592.1| (e_value=2e-72) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27350.1 (e_value=5e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40700.1); Has 230 Blast hits to 202 proteins in 35 species: Archae - 0; Bacteria - 3; Metazoa - 77; Fungi - 4; Plants - 130; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr3:10126238-10127600 FORWARD LENGTH=274;; (*ITAG) Solyc02g093720.2.1 (e_value=8e-174) genomic_reference:SL2.40ch02 gene_region:49041484-49045270 transcript_region:SL2.40ch02:49041484..49045270- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00055064g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|211; (*GB) gi|365222884|gb|AEW69794.1| (e_value=1e-83) Hop-interacting protein THI031 [Solanum lycopersicum];; (*TAIR) AT5G40690.1 (e_value=3e-46) | Symbols: | CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16290770-16291402 FORWARD LENGTH=210;; (*ITAG) Solyc02g093710.1.1 (e_value=2e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:49040402-49040977 transcript_region:SL2.40ch02:49040402..49040977+ functional_description:"Genomic DNA chromosome 3 TAC clone K1G2 (AHRD V1 *-*- Q9LTZ3_ARATH)"; NbS00002804g0010.1 protein AED:0.18 eAED:0.18 QI:0|1|0.33|1|1|0.66|3|0|113; (*GB) gi|224139410|ref|XP_002323098.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=5e-14) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT5G01950.1 (e_value=8e-16) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:365040-369532 REVERSE LENGTH=951;; (*ITAG) Solyc10g074890.1.1 (e_value=5e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57914822-57922140 transcript_region:SL2.40ch10:57914822..57922140- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00002804g0009.1 protein AED:0.06 eAED:0.06 QI:336|1|1|1|0.75|0.8|5|129|227; (*GB) gi|225458175|ref|XP_002281067.1| (e_value=7e-120) PREDICTED: transmembrane protein 136 [Vitis vinifera];; (*SWP) sp|Q6ZRR5|TM136_HUMAN (e_value=4e-19) Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2;; (*TAIR) AT1G35180.1 (e_value=1e-111) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:12877230-12878644 REVERSE LENGTH=231;; (*ITAG) Solyc12g089230.1.1 (e_value=1e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62774318-62783414 transcript_region:SL2.40ch12:62774318..62783414+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_HUMAN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0016021 NbS00002804g0011.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.6|0.75|0.8|5|0|308; (*GB) gi|225458129|ref|XP_002280835.1| (e_value=7e-134) PREDICTED: peptide transporter PTR5-like [Vitis vinifera];; (*SWP) sp|P46032|PTR2_ARATH (e_value=6e-77) Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1;; (*TAIR) AT2G02040.1 (e_value=5e-78) | Symbols: ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 | peptide transporter 2 | chr2:487542-489707 FORWARD LENGTH=585;; (*ITAG) Solyc12g089230.1.1 (e_value=5e-148) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62774318-62783414 transcript_region:SL2.40ch12:62774318..62783414+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_HUMAN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020,GO:0016021 NbS00021085g0001.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|1|1|2|0|185; (*GB) gi|359473188|ref|XP_003631260.1| (e_value=3e-32) PREDICTED: uncharacterized protein LOC100852726 [Vitis vinifera];; (*TAIR) AT1G70420.1 (e_value=1e-33) | Symbols: | Protein of unknown function (DUF1645) | chr1:26539840-26540658 REVERSE LENGTH=272;; (*ITAG) Solyc05g005260.1.1 (e_value=5e-81) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:208914-209765 transcript_region:SL2.40ch05:208914..209765- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; NbS00025094g0005.1 protein AED:0.10 eAED:0.10 QI:200|1|0.66|1|1|1|3|0|328; (*GB) gi|359489197|ref|XP_002273910.2| (e_value=7e-143) PREDICTED: UPF0565 protein C2orf69 homolog [Vitis vinifera];; (*TAIR) AT2G44850.2 (e_value=4e-127) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0565 (InterPro:IPR018881); Has 106 Blast hits to 106 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18499770-18500823 FORWARD LENGTH=319;; (*ITAG) Solyc01g090380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75841446-75843956 transcript_region:SL2.40ch01:75841446..75843956+ functional_description:"Os02g0655100 protein (Fragment) (AHRD V1 ***- Q0DZ09_ORYSJ); contains Interpro domain(s) IPR018881 Uncharacterised protein family UPF0565 "; NbS00025094g0002.1 protein AED:0.24 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|255541060|ref|XP_002511594.1| (e_value=8e-40) Nonspecific lipid-transfer protein A, putative [Ricinus communis];; (*SWP) sp|P10973|NLTPA_RICCO (e_value=3e-31) Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1;; (*TAIR) AT4G33355.2 (e_value=2e-27) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:16067097-16067450 FORWARD LENGTH=117;; (*ITAG) Solyc01g090360.2.1 (e_value=9e-52) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00021112g0002.1 protein AED:0.23 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|204; (*GB) gi|255538892|ref|XP_002510511.1| (e_value=2e-58) Auxin-induced protein 6B, putative [Ricinus communis];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-15) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT1G75590.1 (e_value=6e-50) | Symbols: | SAUR-like auxin-responsive protein family | chr1:28383250-28383714 REVERSE LENGTH=154;; (*ITAG) Solyc01g110560.2.1 (e_value=7e-87) genomic_reference:SL2.40ch01 gene_region:88974036-88974893 transcript_region:SL2.40ch01:88974036..88974893+ go_terms:GO:0005516 functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q1SN26_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00014955g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|1|1|2|0|155; (*GB) gi|353703788|ref|NP_001238798.1| (e_value=5e-63) late embryogenesis abundant protein [Solanum lycopersicum];; (*SWP) sp|P83442|LEAD3_DAUCA (e_value=3e-37) Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G52690.2 (e_value=5e-32) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr1:19619842-19620589 FORWARD LENGTH=169;; (*ITAG) Solyc03g116390.2.1 (e_value=1e-65) genomic_reference:SL2.40ch03 gene_region:59910675-59911543 transcript_region:SL2.40ch03:59910675..59911543- functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- Q2QKE8_CATRO)"; NbS00014955g0015.1 protein AED:0.24 eAED:0.24 QI:360|1|1|1|1|1|2|178|329; (*GB) gi|147819141|emb|CAN68957.1| (e_value=2e-133) hypothetical protein VITISV_015733 [Vitis vinifera];; (*TAIR) AT1G15410.1 (e_value=4e-109) | Symbols: | aspartate-glutamate racemase family | chr1:5299577-5300681 FORWARD LENGTH=330;; (*ITAG) Solyc03g116460.2.1 (e_value=4e-152) genomic_reference:SL2.40ch03 gene_region:59932809-59936469 transcript_region:SL2.40ch03:59932809..59936469- go_terms:GO:0008152 functional_description:"Aspartate racemase (AHRD V1 ***- D4XDK3_9BURK); contains Interpro domain(s) IPR001920 Asp/Glu racemase "; GO:0008152 NbS00014955g0018.1 protein AED:0.00 eAED:0.00 QI:170|1|1|1|1|1|3|176|152; (*ITAG) Solyc03g116400.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:59912099-59913094 transcript_region:SL2.40ch03:59912099..59913094+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014955g0017.1 protein AED:0.02 eAED:0.02 QI:255|1|1|1|1|1|2|295|263; (*GB) gi|224073744|ref|XP_002304152.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT81|C3H39_ARATH (e_value=8e-19) Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis thaliana GN=At3g19360 PE=2 SV=1;; (*TAIR) AT3G19360.1 (e_value=6e-20) | Symbols: | Zinc finger (CCCH-type) family protein | chr3:6707544-6708864 FORWARD LENGTH=386;; (*ITAG) Solyc03g116410.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:59917775-59919730 transcript_region:SL2.40ch03:59917775..59919730+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 39 (AHRD V1 ***- C3H39_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00014955g0016.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|767; (*GB) gi|297814422|ref|XP_002875094.1| (e_value=4e-159) PHD finger family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZUA9|Y2181_ARATH (e_value=5e-107) PHD finger protein At2g01810 OS=Arabidopsis thaliana GN=At2g01810 PE=2 SV=1;; (*TAIR) AT2G01810.1 (e_value=4e-108) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:347537-349952 FORWARD LENGTH=697;; (*ITAG) Solyc03g116440.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59928729-59931166 transcript_region:SL2.40ch03:59928729..59931166+ go_terms:GO:0003700 functional_description:"PHD finger family protein (AHRD V1 *--- D7LPW0_ARALY); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00014955g0026.1 protein AED:0.24 eAED:0.24 QI:212|1|1|1|0.91|0.84|13|236|626; (*GB) gi|297743397|emb|CBI36264.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15420.1 (e_value=9e-47) | Symbols: | CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink). | chr1:5301794-5303296 REVERSE LENGTH=278;; (*ITAG) Solyc03g116380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59902999-59910301 transcript_region:SL2.40ch03:59902999..59910301+ functional_description:"WD-40 repeat protein (AHRD V1 *-*- B2IUC6_NOSP7); contains Interpro domain(s) IPR012979 Protein of unknown function NUC189, C-terminal "; NbS00014955g0020.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|2|0|146; (*GB) gi|297743412|emb|CBI36279.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11280.1 (e_value=4e-30) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3597321-3598347 FORWARD LENGTH=209;; (*ITAG) Solyc03g116470.1.1 (e_value=6e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59937028-59938028 transcript_region:SL2.40ch03:59937028..59938028- functional_description:"Unknown Protein (AHRD V1)"; NbS00004990g0006.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.42|0.71|1|1|7|0|212; (*GB) gi|147810163|emb|CAN78063.1| (e_value=2e-108) hypothetical protein VITISV_036400 [Vitis vinifera];; (*SWP) sp|O82200|MIOX2_ARATH (e_value=2e-105) Inositol oxygenase 2 OS=Arabidopsis thaliana GN=MIOX2 PE=2 SV=2;; (*TAIR) AT2G19800.1 (e_value=1e-106) | Symbols: MIOX2 | myo-inositol oxygenase 2 | chr2:8531106-8533354 REVERSE LENGTH=317;; (*ITAG) Solyc12g008650.1.1 (e_value=2e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2025279-2028961 transcript_region:SL2.40ch12:2025279..2028961- go_terms:GO:0005737 functional_description:"Inositol oxygenase (AHRD V1 ***- A5FF81_FLAJ1); contains Interpro domain(s) IPR007828 Protein of unknown function DUF706 "; GO:0005737 NbS00004990g0008.1 protein AED:0.12 eAED:0.14 QI:0|0|0|1|0|0|2|0|396; (*GB) gi|255551169|ref|XP_002516632.1| (e_value=0.0) glycosyltransferase, putative [Ricinus communis];; (*TAIR) AT3G10630.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:3321722-3323185 REVERSE LENGTH=487;; (*ITAG) Solyc11g006560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1204280-1205734 transcript_region:SL2.40ch11:1204280..1205734+ go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 (AHRD V1 ***- B6T775_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00047356g0005.1 protein AED:0.17 eAED:0.17 QI:748|1|1|1|0.28|0.5|8|613|106; (*ITAG) Solyc08g013720.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:3084903-3091682 transcript_region:SL2.40ch08:3084903..3091682+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU06_ARATH)"; NbS00052979g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.71|1|0.83|0.85|7|33|1487; (*GB) gi|297745511|emb|CBI40591.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FNN7|PP371_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1;; (*TAIR) AT5G08510.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:2753099-2754731 FORWARD LENGTH=511;; (*ITAG) Solyc01g096200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79051800-79061053 transcript_region:SL2.40ch01:79051800..79061053- go_terms:GO:0005488,GO:0000151 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M1E8_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00052979g0007.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|79; (*GB) gi|224130604|ref|XP_002320882.1| (e_value=4e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT3G61860.1 (e_value=6e-11) | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:22900311-22902159 REVERSE LENGTH=264;; (*ITAG) Solyc01g096180.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:79034638-79037851 transcript_region:SL2.40ch01:79034638..79037851- go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 **-- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00052979g0010.1 protein AED:0.13 eAED:0.13 QI:290|0.77|0.7|1|0.88|0.8|10|0|1079; (*GB) gi|350538145|ref|NP_001234073.1| (e_value=0.0) calcium-transporting ATPase, endoplasmic reticulum-type [Solanum lycopersicum];; (*SWP) sp|Q42883|ECAP_SOLLC (e_value=0.0) Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1;; (*TAIR) AT4G00900.1 (e_value=0.0) | Symbols: ECA2, ATECA2 | ER-type Ca2+-ATPase 2 | chr4:382690-386226 REVERSE LENGTH=1054;; (*ITAG) Solyc01g096190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79045830-79051697 transcript_region:SL2.40ch01:79045830..79051697+ go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR005782 ATPase, P-type, calcium-transporting "; GO:0016020,GO:0008152,GO:0016021 NbS00006895g0009.1 protein AED:0.24 eAED:0.44 QI:0|0.33|0.25|1|0.33|0.5|4|0|166; (*GB) gi|350539345|ref|NP_001234644.1| (e_value=2e-69) peroxidase precursor [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=4e-54) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=3e-55) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g047740.2.1 (e_value=4e-73) genomic_reference:SL2.40ch07 gene_region:56275239-56276936 transcript_region:SL2.40ch07:56275239..56276936+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00006895g0008.1 protein AED:0.45 eAED:0.50 QI:266|0.75|0.8|1|0.5|1|5|0|184; (*GB) gi|356575536|ref|XP_003555896.1| (e_value=2e-77) PREDICTED: putative DNA repair protein RAD23-3-like isoform 2 [Glycine max];; (*SWP) sp|Q84L30|RD23D_ARATH (e_value=5e-68) Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2;; (*TAIR) AT5G38470.2 (e_value=1e-69) | Symbols: RAD23D | Rad23 UV excision repair protein family | chr5:15404720-15407251 FORWARD LENGTH=332;; (*ITAG) Solyc02g063130.2.1 (e_value=6e-76) genomic_reference:SL2.40ch02 gene_region:29750711-29757113 transcript_region:SL2.40ch02:29750711..29757113- go_terms:GO:0031593,GO:0070628 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593,GO:0070628 NbS00006895g0003.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|330; (*GB) gi|225423895|ref|XP_002281709.1| (e_value=7e-163) PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1-like [Vitis vinifera];; (*SWP) sp|P82280|RAV2_ARATH (e_value=7e-130) AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1;; (*TAIR) AT1G68840.2 (e_value=6e-131) | Symbols: RAV2, AtRAV2 | related to ABI3/VP1 2 | chr1:25880442-25881500 FORWARD LENGTH=352;; (*ITAG) Solyc04g007000.1.1 (e_value=1e-161) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:728928-730046 transcript_region:SL2.40ch04:728928..730046+ go_terms:GO:0003677,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** ERF78_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0003677,GO:0016564 NbS00015056g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.84|0.71|0.85|0.76|0.78|14|0|592; (*GB) gi|359484820|ref|XP_002271781.2| (e_value=3e-138) PREDICTED: putative clathrin assembly protein At5g35200-like [Vitis vinifera];; (*SWP) sp|Q9LHS0|CAP10_ARATH (e_value=2e-119) Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1;; (*TAIR) AT5G35200.1 (e_value=1e-120) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr5:13462463-13465581 REVERSE LENGTH=544;; (*ITAG) Solyc12g010530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3524162-3527442 transcript_region:SL2.40ch12:3524162..3527442+ go_terms:GO:0030118,GO:0005543 functional_description:"Clathrin assembly protein (AHRD V1 ***- B6TW95_MAIZE); contains Interpro domain(s) IPR011417 ANTH "; GO:0030118,GO:0005543 NbS00028310g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.71|0.62|0.87|0.71|0.75|8|297|346; (*GB) gi|225450767|ref|XP_002279397.1| (e_value=4e-132) PREDICTED: cell cycle checkpoint control protein RAD9A [Vitis vinifera];; (*TAIR) AT3G05480.1 (e_value=6e-114) | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control protein family | chr3:1585383-1588238 FORWARD LENGTH=439;; (*ITAG) Solyc10g044780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23228575-23235285 transcript_region:SL2.40ch10:23228575..23235285- go_terms:GO:0006281 functional_description:"Cell cycle checkpoint control protein family (AHRD V1 **-- D7L3V1_ARALY); contains Interpro domain(s) IPR007268 Rad9 "; GO:0006281 NbC24612287g0001.1 protein AED:0.15 eAED:0.23 QI:16|0|0|1|1|0.5|2|0|88; (*GB) gi|225453897|ref|XP_002278913.1| (e_value=2e-25) PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera];; (*TAIR) AT2G45400.1 (e_value=2e-22) | Symbols: BEN1 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:18703960-18706235 REVERSE LENGTH=364;; (*ITAG) Solyc05g051010.2.1 (e_value=4e-26) genomic_reference:SL2.40ch05 gene_region:60362987-60364407 transcript_region:SL2.40ch05:60362987..60364407+ go_terms:GO:0004022 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022 NbS00009567g0004.1 protein AED:0.16 eAED:0.16 QI:268|1|0.9|1|0.88|0.7|10|0|561; (*GB) gi|359479655|ref|XP_003632320.1| (e_value=0.0) PREDICTED: type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2-like [Vitis vinifera];; (*SWP) sp|Q9LR47|IP5P3_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2;; (*TAIR) AT3G63240.1 (e_value=0.0) | Symbols: | DNAse I-like superfamily protein | chr3:23364411-23366876 REVERSE LENGTH=547;; (*ITAG) Solyc09g065480.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:59188535-59191538 transcript_region:SL2.40ch09:59188535..59191538- go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 ***- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00038115g0005.1 protein AED:0.24 eAED:0.30 QI:0|0.71|0.5|1|0.85|0.87|8|0|264; (*GB) gi|356560613|ref|XP_003548585.1| (e_value=5e-79) PREDICTED: protein notum homolog [Glycine max];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=4e-19) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT4G19410.2 (e_value=6e-74) | Symbols: | Pectinacetylesterase family protein | chr4:10581037-10584766 REVERSE LENGTH=517;; (*ITAG) Solyc03g078260.2.1 (e_value=9e-98) genomic_reference:SL2.40ch03 gene_region:43808497-43812309 transcript_region:SL2.40ch03:43808497..43812309+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase (Fragment) (AHRD V1 *--- C6JT68_9MYRT); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00025571g0008.1 protein AED:0.04 eAED:0.04 QI:302|0.94|0.94|1|0.82|0.88|18|341|612; (*GB) gi|255572632|ref|XP_002527249.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G48520.1 (e_value=0.0) | Symbols: | unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | chr5:19661407-19666147 FORWARD LENGTH=617;; (*ITAG) Solyc06g083090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44925081-44937173 transcript_region:SL2.40ch06:44925081..44937173- functional_description:"HAUS augmin-like complex subunit 3 (AHRD V1 *--- HAUS3_HUMAN)"; NbS00025571g0007.1 protein AED:0.01 eAED:0.01 QI:89|0.66|0.75|1|1|1|4|409|165; (*GB) gi|224069908|ref|XP_002303082.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48500.1 (e_value=4e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167;; (*ITAG) Solyc06g083080.2.1 (e_value=3e-51) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037779g0006.1 protein AED:0.36 eAED:0.39 QI:57|0.61|0.5|0.92|0.53|0.42|14|0|447; (*GB) gi|297792875|ref|XP_002864322.1| (e_value=0.0) hypothetical protein ARALYDRAFT_495511 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9XGM2|MRE11_ARATH (e_value=1e-173) Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1;; (*TAIR) AT5G54260.1 (e_value=9e-175) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720;; (*ITAG) Solyc09g009340.1.1 (e_value=2e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00016574g0004.1 protein AED:0.09 eAED:0.10 QI:0|1|0|1|1|1|3|0|281; (*GB) gi|350540660|ref|NP_001234576.1| (e_value=2e-81) TCP transcription factor 10 [Solanum lycopersicum];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=9e-48) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=7e-49) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc07g053410.2.1 (e_value=2e-66) genomic_reference:SL2.40ch07 gene_region:59175771-59176716 transcript_region:SL2.40ch07:59175771..59176716+ functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00016015g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.6|0.33|0.66|0.8|0.83|6|0|209; (*GB) gi|225444565|ref|XP_002277136.1| (e_value=1e-116) PREDICTED: dedicator of cytokinesis protein 11 [Vitis vinifera];; (*TAIR) AT4G16340.1 (e_value=2e-111) | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830;; (*ITAG) Solyc08g016060.1.1 (e_value=2e-103) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:6524269-6534067 transcript_region:SL2.40ch08:6524269..6534067- functional_description:"Dedicator of cytokinesis 8 (AHRD V1 *-*- B9EJ70_MOUSE)"; NbS00001765g0005.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|224064167|ref|XP_002301396.1| (e_value=6e-52) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9SUE3|CRF4_ARATH (e_value=7e-37) Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2;; (*TAIR) AT4G27950.1 (e_value=5e-38) | Symbols: CRF4 | cytokinin response factor 4 | chr4:13909732-13910739 REVERSE LENGTH=335;; (*ITAG) Solyc01g095500.2.1 (e_value=1e-109) genomic_reference:SL2.40ch01 gene_region:78502748-78503807 transcript_region:SL2.40ch01:78502748..78503807+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6T615_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00001765g0016.1 protein AED:0.17 eAED:0.17 QI:331|1|0.92|1|0.91|0.84|13|0|415; (*GB) gi|728626|emb|CAA88492.1| (e_value=0.0) TAF-2 [Nicotiana tabacum];; (*SWP) sp|Q99142|TAF1_TOBAC (e_value=1e-160) Transcriptional activator TAF-1 (Fragment) OS=Nicotiana tabacum GN=TAF1 PE=2 SV=1;; (*TAIR) AT2G46270.1 (e_value=5e-76) | Symbols: GBF3 | G-box binding factor 3 | chr2:19000859-19002901 FORWARD LENGTH=382;; (*ITAG) Solyc01g095460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78463593-78470070 transcript_region:SL2.40ch01:78463593..78470070+ go_terms:GO:0043565 functional_description:"G-box binding factor 3 (AHRD V1 **** D7LDY1_ARALY); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0043565 NbS00001765g0023.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.85|1|0.33|0.42|7|338|271; (*GB) gi|225454434|ref|XP_002280220.1| (e_value=9e-156) PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=1e-114) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT3G61610.1 (e_value=9e-147) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:22799480-22801029 FORWARD LENGTH=317;; (*ITAG) Solyc01g095470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78476591-78482443 transcript_region:SL2.40ch01:78476591..78482443+ go_terms:GO:0005975 functional_description:"Aldose 1-epimerase family protein (AHRD V1 ***- D7LSC1_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0005975 NbS00001765g0025.1 protein AED:0.39 eAED:0.39 QI:162|0.66|0.5|1|0|0.5|4|0|130; (*GB) gi|6692118|gb|AAF24583.1|AC007764_25 (e_value=1e-87) F22C12.2 [Arabidopsis thaliana];; (*SWP) sp|Q94F47|UBC28_ARATH (e_value=1e-88) Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=1e-89) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc10g011740.2.1 (e_value=1e-89) genomic_reference:SL2.40ch10 gene_region:3983198-3987001 transcript_region:SL2.40ch10:3983198..3987001- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 8 (AHRD V1 **** UBC8_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00001765g0026.1 protein AED:0.10 eAED:0.28 QI:689|0|0.33|1|0|0|3|0|56 NbS00001765g0003.1 protein AED:0.39 eAED:0.42 QI:0|0|0|1|1|1|3|0|177; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00001765g0027.1 protein AED:0.42 eAED:0.43 QI:126|0.9|0.72|1|0.9|0.90|11|0|239; (*GB) gi|255579328|ref|XP_002530509.1| (e_value=3e-136) Exosome complex exonuclease RRP41, putative [Ricinus communis];; (*SWP) sp|Q921I9|EXOS4_MOUSE (e_value=3e-72) Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3;; (*TAIR) AT3G61620.2 (e_value=3e-121) | Symbols: RRP41 | 3'-5'-exoribonuclease family protein | chr3:22801382-22802910 REVERSE LENGTH=241;; (*ITAG) Solyc01g095480.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:78483413-78488420 transcript_region:SL2.40ch01:78483413..78488420- go_terms:GO:0006396 functional_description:"Ribonuclease PH (AHRD V1 ***- RNPH_STRGG); contains Interpro domain(s) IPR001247 Exoribonuclease, phosphorolytic domain 1 "; GO:0006396 NbS00057807g0004.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|0.7|0.81|11|312|768; (*GB) gi|224131634|ref|XP_002321139.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03516|RSN1_YEAST (e_value=1e-35) Uncharacterized protein RSN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSN1 PE=1 SV=1;; (*TAIR) AT4G22120.6 (e_value=0.0) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:11715976-11719144 REVERSE LENGTH=771;; (*ITAG) Solyc07g048110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56620600-56630095 transcript_region:SL2.40ch07:56620600..56630095- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C24H6.13 (AHRD V1 **-- YA7D_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00046605g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|188; (*GB) gi|255565669|ref|XP_002523824.1| (e_value=7e-87) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G44380.1 (e_value=2e-82) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:16036254-16036814 REVERSE LENGTH=186;; (*ITAG) Solyc11g068550.1.1 (e_value=1e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50323297-50323863 transcript_region:SL2.40ch11:50323297..50323863- go_terms:GO:0009269 functional_description:"Os12g0119800 protein (Fragment) (AHRD V1 ***- Q0IQI1_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; GO:0009269 NbS00031842g0018.1 protein AED:0.02 eAED:0.02 QI:0|0.33|0|1|0.66|0.5|4|0|864; (*GB) gi|147864200|emb|CAN83025.1| (e_value=0.0) hypothetical protein VITISV_039681 [Vitis vinifera];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=0.0) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT3G56640.1 (e_value=0.0) | Symbols: SEC15A | exocyst complex component sec15A | chr3:20981964-20984336 FORWARD LENGTH=790;; (*ITAG) Solyc12g096290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63618192-63620489 transcript_region:SL2.40ch12:63618192..63620489+ go_terms:GO:0005975,GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0005975,GO:0000145 NbS00031842g0014.1 protein AED:0.12 eAED:0.13 QI:264|1|0.77|1|1|1|9|0|691; (*GB) gi|359475954|ref|XP_002279357.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 35-like [Vitis vinifera];; (*SWP) sp|Q9FKG5|PUB51_ARATH (e_value=6e-121) U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2;; (*TAIR) AT5G12000.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr5:3874151-3876780 REVERSE LENGTH=701;; (*ITAG) Solyc12g096010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63432653-63438226 transcript_region:SL2.40ch12:63432653..63438226- go_terms:GO:0006950,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006950,GO:0006468 NbS00031842g0013.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|4|0|574; (*GB) gi|225429580|ref|XP_002280195.1| (e_value=0.0) PREDICTED: protein phosphatase 2C 16-like [Vitis vinifera];; (*SWP) sp|Q0JLP9|P2C06_ORYSJ (e_value=4e-166) Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1;; (*TAIR) AT1G72770.3 (e_value=2e-164) | Symbols: HAB1 | homology to ABI1 | chr1:27390998-27392851 FORWARD LENGTH=511;; (*ITAG) Solyc12g096020.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63439852-63442361 transcript_region:SL2.40ch12:63439852..63442361- go_terms:GO:0004722,GO:0008022 functional_description:"Protein phosphatase 2C (AHRD V1 **** A5A6P8_WHEAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00031842g0007.1 protein AED:0.74 eAED:0.85 QI:0|0|0|0.3|1|1|10|0|255; (*GB) gi|224085720|ref|XP_002307678.1| (e_value=6e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=4e-29) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04945.3 (e_value=2e-29) | Symbols: | HIT-type Zinc finger family protein | chr1:1399588-1402651 FORWARD LENGTH=644;; (*ITAG) Solyc04g076740.2.1 (e_value=2e-30) genomic_reference:SL2.40ch04 gene_region:59228814-59231535 transcript_region:SL2.40ch04:59228814..59231535+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00000776g0004.1 protein AED:0.67 eAED:0.77 QI:0|0|0|0.6|1|1|5|0|100 NbS00000776g0006.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0.2|0.8|0.5|0.8|5|0|428; (*GB) gi|224127878|ref|XP_002320186.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G01430.1 (e_value=9e-151) | Symbols: TBL25 | TRICHOME BIREFRINGENCE-LIKE 25 | chr1:156953-158536 REVERSE LENGTH=456;; (*ITAG) Solyc10g009590.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3707515-3710640 transcript_region:SL2.40ch10:3707515..3710640- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00040718g0001.1 protein AED:0.27 eAED:0.27 QI:70|1|0.5|1|0|0|2|0|390; (*GB) gi|115361537|gb|ABI95859.1| (e_value=0.0) S-adenosyl-L-methionine synthase [Nicotiana suaveolens];; (*SWP) sp|Q9M7K8|METK1_TOBAC (e_value=0.0) S-adenosylmethionine synthase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1;; (*TAIR) AT2G36880.2 (e_value=0.0) | Symbols: MAT3 | methionine adenosyltransferase 3 | chr2:15479721-15480893 REVERSE LENGTH=390;; (*ITAG) Solyc09g008280.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1749950-1751122 transcript_region:SL2.40ch09:1749950..1751122+ go_terms:GO:0004478,GO:0005507 functional_description:"S-adenosylmethionine synthase (AHRD V1 ***- B5LAW6_CAPAN); contains Interpro domain(s) IPR002133 S-adenosylmethionine synthetase "; GO:0004478,GO:0005507 NbS00040718g0005.1 protein AED:0.35 eAED:0.41 QI:596|0.33|0.5|1|0.33|0.25|4|0|130; (*GB) gi|255556896|ref|XP_002519481.1| (e_value=9e-47) Thioredoxin, putative [Ricinus communis];; (*SWP) sp|Q7XSQ7|TRL33_ORYSJ (e_value=4e-44) Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica GN=Os04g0560200 PE=2 SV=2;; (*TAIR) AT3G53220.1 (e_value=3e-43) | Symbols: | Thioredoxin superfamily protein | chr3:19722032-19722615 FORWARD LENGTH=126;; (*ITAG) Solyc09g008290.2.1 (e_value=2e-58) genomic_reference:SL2.40ch09 gene_region:1751435-1754554 transcript_region:SL2.40ch09:1751435..1754554- go_terms:GO:0032403 functional_description:"Thioredoxin family protein (AHRD V1 ***- D7LUF8_ARALY); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0032403 NbS00009568g0001.1 protein AED:0.11 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|320; (*GB) gi|357478059|ref|XP_003609315.1| (e_value=1e-135) Solute carrier family 35 member C2 [Medicago truncatula];; (*SWP) sp|Q9SKJ7|PT225_ARATH (e_value=9e-135) Probable sugar phosphate/phosphate translocator At2g25520 OS=Arabidopsis thaliana GN=At2g25520 PE=1 SV=1;; (*TAIR) AT2G25520.1 (e_value=7e-136) | Symbols: | Drug/metabolite transporter superfamily protein | chr2:10860950-10861993 FORWARD LENGTH=347;; (*ITAG) Solyc08g060940.1.1 (e_value=7e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:43005135-43006190 transcript_region:SL2.40ch08:43005135..43006190- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00014936g0001.1 protein AED:0.17 eAED:0.18 QI:576|1|0.85|1|1|1|7|0|735; (*GB) gi|255568450|ref|XP_002525199.1| (e_value=3e-167) sensory transduction histidine kinase, putative [Ricinus communis];; (*SWP) sp|Q93WK5|APRR7_ARATH (e_value=3e-117) Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1;; (*TAIR) AT5G02810.1 (e_value=2e-118) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727;; (*ITAG) Solyc10g086000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64312291-64321881 transcript_region:SL2.40ch10:64312291..64321881- go_terms:GO:0016564 functional_description:"Pseudo-response regulator 7 (AHRD V1 ***- D0PPG7_CASSA); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016564 NbS00038058g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|138; (*ITAG) Solyc06g011460.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00038311g0006.1 protein AED:0.25 eAED:0.26 QI:0|0|0|1|0|0|2|0|275; (*GB) gi|357528933|gb|AET80687.1| (e_value=2e-123) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*TAIR) AT1G24430.1 (e_value=6e-17) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc12g096790.1.1 (e_value=1e-127) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63908247-63909593 transcript_region:SL2.40ch12:63908247..63909593- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 *--- Q70G32_SOLLC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00038311g0007.1 protein AED:0.37 eAED:0.51 QI:0|0|0|1|0|0|2|0|145; (*GB) gi|357528933|gb|AET80687.1| (e_value=1e-53) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=9e-22) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=1e-22) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g096770.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63889035-63890360 transcript_region:SL2.40ch12:63889035..63890360+ go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-- D6BK25_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbC24695926g0001.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|0|0|2|0|101; (*GB) gi|242823567|gb|ACS93887.1| (e_value=2e-48) RNA polymerase B [Solanum dulcamara];; (*SWP) sp|Q33C46|RPOB_NICTO (e_value=3e-47) DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1;; (*ITAG) ATCG00190.1 (e_value=2e-40) | Symbols: RPOB | RNA polymerase subunit beta | chrC:23111-26329 REVERSE LENGTH=1072;; (*ITAG) Solyc01g017300.1.1 (e_value=6e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:23934630-23936249 transcript_region:SL2.40ch01:23934630..23936249+ go_terms:GO:0006350,GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 *-*- D4PBB1_PHODC); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0006350,GO:0016021 NbS00024886g0005.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.46|0.92|0.83|0.84|13|357|462; (*GB) gi|225456844|ref|XP_002279018.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Vitis vinifera];; (*SWP) sp|Q9LY87|RGLG2_ARATH (e_value=0.0) E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1;; (*TAIR) AT5G14420.2 (e_value=0.0) | Symbols: RGLG2 | RING domain ligase2 | chr5:4648355-4650563 REVERSE LENGTH=468;; (*ITAG) Solyc03g111870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00024886g0004.1 protein AED:0.16 eAED:0.16 QI:180|0.88|1|1|0.88|0.8|10|282|353; (*GB) gi|225447502|ref|XP_002265275.1| (e_value=4e-122) PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera];; (*SWP) sp|P49572|TRPC_ARATH (e_value=2e-101) Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2;; (*TAIR) AT5G48220.1 (e_value=1e-108) | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379;; (*ITAG) Solyc03g111850.2.1 (e_value=5e-156) genomic_reference:SL2.40ch03 gene_region:56510892-56516492 transcript_region:SL2.40ch03:56510892..56516492- go_terms:GO:0004425,GO:0004635 functional_description:"Indole-3-glycerol phosphate synthase-like (AHRD V1 **** C8TFG9_ORYSI); contains Interpro domain(s) IPR013798 Indole-3-glycerol phosphate synthase "; GO:0004425,GO:0004635 NbS00025239g0006.1 protein AED:0.10 eAED:0.10 QI:268|1|1|1|0.8|0.66|6|467|310; (*GB) gi|147816495|emb|CAN77350.1| (e_value=2e-166) hypothetical protein VITISV_007542 [Vitis vinifera];; (*SWP) sp|Q28G05|SYF2_XENTR (e_value=9e-30) Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1;; (*TAIR) AT2G16860.1 (e_value=7e-151) | Symbols: | GCIP-interacting family protein | chr2:7304139-7305959 REVERSE LENGTH=298;; (*ITAG) Solyc10g055640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52588098-52594877 transcript_region:SL2.40ch10:52588098..52594877- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor syf2 (AHRD V1 ***- D0MQW6_PHYIN); contains Interpro domain(s) IPR013260 mRNA splicing factor SYF2 "; GO:0005515 NbS00025239g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.5|1|0.33|0.75|4|434|271; (*GB) gi|9931530|gb|AAG02208.1|AF290201_1 (e_value=0.0) plasma membrane intrinsic protein PIP2 [Solanum chacoense];; (*SWP) sp|P93004|PIP27_ARATH (e_value=1e-163) Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=8e-165) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc10g055630.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52582972-52584379 transcript_region:SL2.40ch10:52582972..52584379+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q8W506_TOBAC); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00017339g0001.1 protein AED:0.00 eAED:0.00 QI:104|1|0.5|1|0|0|2|0|285; (*GB) gi|255543707|ref|XP_002512916.1| (e_value=2e-115) syntaxin, putative [Ricinus communis];; (*SWP) sp|Q9ZPV9|SY112_ARATH (e_value=1e-89) Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2;; (*TAIR) AT2G18260.1 (e_value=8e-91) | Symbols: SYP112, ATSYP112 | syntaxin of plants 112 | chr2:7942275-7943192 FORWARD LENGTH=305;; (*ITAG) Solyc01g109750.2.1 (e_value=1e-155) genomic_reference:SL2.40ch01 gene_region:88378398-88379448 transcript_region:SL2.40ch01:88378398..88379448- go_terms:GO:0043495 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0043495 NbS00017339g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.4|1|0.5|0.6|5|0|295; (*GB) gi|224077850|ref|XP_002305435.1| (e_value=3e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIJ9|PME11_ARATH (e_value=6e-110) Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1;; (*TAIR) AT2G21610.1 (e_value=5e-111) | Symbols: PE11, ATPE11 | pectinesterase 11 | chr2:9245161-9247025 REVERSE LENGTH=352;; (*ITAG) Solyc01g109740.2.1 (e_value=9e-170) genomic_reference:SL2.40ch01 gene_region:88376414-88378220 transcript_region:SL2.40ch01:88376414..88378220+ go_terms:GO:0030599 functional_description:"Pectinesterase family protein (AHRD V1 **** D7LBW7_ARALY); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00013685g0020.1 protein AED:0.02 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|155; (*GB) gi|15232719|ref|NP_187570.1| (e_value=1e-28) putative pathogenesis-related protein [Arabidopsis thaliana];; (*SWP) sp|P07053|PR1B_TOBAC (e_value=1e-24) Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G09590.1 (e_value=2e-31) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr3:2944953-2945513 FORWARD LENGTH=186;; (*ITAG) Solyc09g005950.2.1 (e_value=1e-82) genomic_reference:SL2.40ch09 gene_region:657085-658361 transcript_region:SL2.40ch09:657085..658361- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein 1a (AHRD V1 ***- Q00MX6_MALDO); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00013685g0007.1 protein AED:0.23 eAED:0.23 QI:130|1|1|1|0.6|0.66|6|391|224; (*GB) gi|297741512|emb|CBI32644.3| (e_value=4e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02740.1 (e_value=3e-48) | Symbols: | Ribosomal protein S24e family protein | chr5:616517-618267 FORWARD LENGTH=228;; (*ITAG) Solyc09g005930.2.1 (e_value=3e-112) genomic_reference:SL2.40ch09 gene_region:644543-650137 transcript_region:SL2.40ch09:644543..650137- functional_description:"Unknown Protein (AHRD V1)"; NbS00013685g0019.1 protein AED:0.29 eAED:0.29 QI:266|0.8|0.83|1|0.2|0.16|6|474|187; (*GB) gi|283135892|gb|ADB11337.1| (e_value=1e-68) theta class glutathione transferase GSTT1 [Populus trichocarpa];; (*SWP) sp|Q9ZRT5|GSTT1_ARATH (e_value=2e-59) Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1;; (*TAIR) AT5G41210.1 (e_value=2e-60) | Symbols: ATGSTT1, GST10, GSTT1 | glutathione S-transferase THETA 1 | chr5:16492550-16493884 REVERSE LENGTH=245;; (*ITAG) Solyc08g080900.2.1 (e_value=4e-104) genomic_reference:SL2.40ch08 gene_region:61232712-61236723 transcript_region:SL2.40ch08:61232712..61236723- go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** B2MVQ2_PANGI); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; GO:0004364 NbS00013685g0027.1 protein AED:0.04 eAED:0.05 QI:0|0.57|0.37|1|0.57|0.5|8|0|967; (*GB) gi|255537433|ref|XP_002509783.1| (e_value=0.0) copper-transporting atpase p-type, putative [Ricinus communis];; (*SWP) sp|Q9SH30|HMA5_ARATH (e_value=0.0) Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2;; (*TAIR) AT1G63440.1 (e_value=0.0) | Symbols: HMA5 | heavy metal atpase 5 | chr1:23527655-23531109 FORWARD LENGTH=995;; (*ITAG) Solyc08g080890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61228295-61231752 transcript_region:SL2.40ch08:61228295..61231752+ go_terms:GO:0004008 functional_description:"Copper-exporting ATPase (AHRD V1 **** C0X752_ENTFA); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00013685g0023.1 protein AED:0.15 eAED:0.17 QI:306|0|0.33|1|1|1|3|0|447; (*GB) gi|225439825|ref|XP_002274179.1| (e_value=0.0) PREDICTED: protein GPR107-like [Vitis vinifera];; (*SWP) sp|Q8BUV8|GP107_MOUSE (e_value=6e-65) Protein GPR107 OS=Mus musculus GN=Gpr107 PE=2 SV=2;; (*TAIR) AT5G18520.1 (e_value=0.0) | Symbols: | Lung seven transmembrane receptor family protein | chr5:6145027-6146349 FORWARD LENGTH=440;; (*ITAG) Solyc09g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:641683-644775 transcript_region:SL2.40ch09:641683..644775+ go_terms:GO:0016021 functional_description:"G protein-coupled seven transmembrane receptor (AHRD V1 **-- A8J5P4_CHLRE); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00013685g0006.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|133; (*ITAG) Solyc06g060410.2.1 (e_value=1e-16) genomic_reference:SL2.40ch06 gene_region:34813419-34815588 transcript_region:SL2.40ch06:34813419..34815588+ go_terms:GO:0005515 functional_description:"MORN repeat protein (AHRD V1 *--- A3SI83_9RHOB); contains Interpro domain(s) IPR003409 MORN motif "; GO:0005515 NbS00017719g0004.1 protein AED:0.29 eAED:0.35 QI:40|0.66|0.25|1|0.66|0.5|4|0|150; (*GB) gi|255580361|ref|XP_002531008.1| (e_value=4e-35) diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis];; (*SWP) sp|Q8VY81|NUD21_ARATH (e_value=1e-31) Nudix hydrolase 21, chloroplastic OS=Arabidopsis thaliana GN=NUDT21 PE=2 SV=1;; (*TAIR) AT1G73540.1 (e_value=1e-32) | Symbols: atnudt21, NUDT21 | nudix hydrolase homolog 21 | chr1:27645880-27646571 REVERSE LENGTH=198;; (*ITAG) Solyc11g011360.1.1 (e_value=3e-75) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4399558-4401854 transcript_region:SL2.40ch11:4399558..4401854- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 **-- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00008331g0003.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|91 NbS00001653g0010.1 protein AED:0.25 eAED:0.26 QI:164|0.92|0.8|1|0.78|0.73|15|33|834; (*GB) gi|225437987|ref|XP_002272685.1| (e_value=0.0) PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera];; (*SWP) sp|Q4KLU2|PRP39_XENLA (e_value=1e-74) Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1;; (*TAIR) AT1G04080.1 (e_value=0.0) | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1051803-1056550 FORWARD LENGTH=768;; (*ITAG) Solyc09g064590.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57503092-57521801 transcript_region:SL2.40ch09:57503092..57521801+ go_terms:GO:0030627 functional_description:"Pre-mRNA-processing factor 39 (AHRD V1 *-** C5FSC0_NANOT); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helix "; GO:0030627 NbS00001653g0001.1 protein AED:0.07 eAED:0.07 QI:388|0|0.5|1|0|1|2|683|547; (*GB) gi|225437979|ref|XP_002272156.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259944 [Vitis vinifera];; (*TAIR) AT1G04090.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF946) | chr1:1057225-1059247 FORWARD LENGTH=572;; (*ITAG) Solyc09g064540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57414742-57418748 transcript_region:SL2.40ch09:57414742..57418748- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00001653g0113.1 protein AED:0.25 eAED:0.25 QI:0|0.55|0.5|0.9|0.77|0.7|10|315|896 NbS00001653g0103.1 protein AED:0.01 eAED:0.01 QI:183|1|1|1|0.5|0.33|3|454|297 NbS00001653g0115.1 protein AED:0.32 eAED:0.32 QI:196|1|1|1|1|1|4|312|324 NbS00041075g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.66|0.5|4|0|174; (*GB) gi|356575893|ref|XP_003556071.1| (e_value=1e-101) PREDICTED: ATP sulfurylase 1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=4e-101) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=3e-102) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc03g005260.2.1 (e_value=6e-108) genomic_reference:SL2.40ch03 gene_region:148411-153101 transcript_region:SL2.40ch03:148411..153101- go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00013516g0005.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|193; (*GB) gi|76573331|gb|ABA46770.1| (e_value=5e-110) small GTP-binding protein Sar1BNt-like protein [Solanum tuberosum];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=3e-108) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=2e-109) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc01g100350.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:82173471-82176296 transcript_region:SL2.40ch01:82173471..82176296- go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00019205g0008.1 protein AED:0.09 eAED:0.09 QI:378|1|1|1|0.75|0.8|5|170|342; (*GB) gi|225451974|ref|XP_002279826.1| (e_value=8e-79) PREDICTED: uncharacterized protein LOC100248073 [Vitis vinifera];; (*TAIR) AT5G16030.1 (e_value=3e-64) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5238242-5240578 FORWARD LENGTH=339;; (*ITAG) Solyc02g085750.2.1 (e_value=1e-122) genomic_reference:SL2.40ch02 gene_region:43126378-43128695 transcript_region:SL2.40ch02:43126378..43128695+ functional_description:"LuxR family transcriptional regulator (Fragment) (AHRD V1 *-*- D9ZBL8_9CARY)"; NbS00019205g0009.1 protein AED:0.36 eAED:0.37 QI:0|0.66|0.4|1|0.22|0.1|10|0|481; (*GB) gi|225451989|ref|XP_002279924.1| (e_value=1e-135) PREDICTED: uncharacterized protein LOC100256693 [Vitis vinifera];; (*SWP) sp|P54493|GLUP_BACSU (e_value=3e-20) Rhomboid protease gluP OS=Bacillus subtilis (strain 168) GN=gluP PE=1 SV=2;; (*TAIR) AT5G38510.2 (e_value=7e-103) | Symbols: | Rhomboid-related intramembrane serine protease family protein | chr5:15417839-15420002 REVERSE LENGTH=434;; (*ITAG) Solyc02g085760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43130910-43132931 transcript_region:SL2.40ch02:43130910..43132931+ go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7MJX8_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00019205g0010.1 protein AED:0.28 eAED:0.28 QI:206|1|0.90|1|0.8|0.90|11|241|390; (*GB) gi|225451993|ref|XP_002283479.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera];; (*SWP) sp|Q6PAV2|HERC4_MOUSE (e_value=5e-47) Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2;; (*TAIR) AT5G16040.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:5240860-5243308 REVERSE LENGTH=396;; (*ITAG) Solyc02g085780.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43134602-43139924 transcript_region:SL2.40ch02:43134602..43139924- go_terms:GO:0008536 functional_description:"Regulator of chromosome condensation (RCC1)-like protein (AHRD V1 **-- D0NEM9_PHYIN); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008536 NbS00009457g0003.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.5|1|1|2|0|81; (*ITAG) Solyc05g040050.1.1 (e_value=5e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00009457g0004.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0|0|3|0|790; (*GB) gi|147772268|emb|CAN67351.1| (e_value=0.0) hypothetical protein VITISV_018091 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc05g040050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:48153011-48155362 transcript_region:SL2.40ch05:48153011..48155362+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_HAMD5); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00022146g0009.1 protein AED:0.00 eAED:0.00 QI:200|1|1|1|1|1|2|304|90 NbS00022146g0010.1 protein AED:0.15 eAED:0.15 QI:157|1|0.88|1|0.75|0.77|9|0|464; (*GB) gi|359811337|ref|NP_001241486.1| (e_value=0.0) uncharacterized protein LOC100784099 [Glycine max];; (*SWP) sp|P81795|IF2G_RAT (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00039674g0003.1 protein AED:0.00 eAED:0.02 QI:0|1|0.5|1|1|1|2|94|818; (*GB) gi|255557909|ref|XP_002519983.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q2Z2E9|SCR_IPONI (e_value=0.0) Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1;; (*TAIR) AT3G54220.1 (e_value=0.0) | Symbols: SCR, SGR1 | GRAS family transcription factor | chr3:20070550-20072625 FORWARD LENGTH=653;; (*ITAG) Solyc10g074680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57553986-57557750 transcript_region:SL2.40ch10:57553986..57557750- functional_description:"SCARECROW (AHRD V1 *--- Q5NDC9_CUCSA); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00055492g0005.1 protein AED:0.07 eAED:0.07 QI:66|1|1|1|1|1|6|493|168; (*GB) gi|148841111|gb|ABR14728.1| (e_value=7e-93) ubiquitin conjugating enzyme [Gossypium hirsutum];; (*SWP) sp|Q9FMM0|UBC18_ARATH (e_value=2e-88) Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1;; (*TAIR) AT5G42990.1 (e_value=1e-89) | Symbols: UBC18 | ubiquitin-conjugating enzyme 18 | chr5:17244206-17245904 REVERSE LENGTH=161;; (*ITAG) Solyc02g084760.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:42439595-42444201 transcript_region:SL2.40ch02:42439595..42444201+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 W (AHRD V1 **** B6SI81_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00055492g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|0|332; (*GB) gi|255561000|ref|XP_002521512.1| (e_value=0.0) Peroxidase 72 precursor, putative [Ricinus communis];; (*SWP) sp|Q9FJZ9|PER72_ARATH (e_value=2e-171) Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1;; (*TAIR) AT5G66390.1 (e_value=1e-172) | Symbols: | Peroxidase superfamily protein | chr5:26516063-26517329 REVERSE LENGTH=336;; (*ITAG) Solyc03g033710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9595371-9598379 transcript_region:SL2.40ch03:9595371..9598379+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00029340g0004.1 protein AED:0.02 eAED:0.10 QI:212|1|0.6|1|0.75|0.8|5|0|344; (*GB) gi|147860573|emb|CAN79719.1| (e_value=2e-46) hypothetical protein VITISV_012742 [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=1e-12) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT2G24370.1 (e_value=1e-37) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr2:10369979-10373063 REVERSE LENGTH=788;; (*ITAG) Solyc12g017840.1.1 (e_value=3e-155) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:7545973-7550927 transcript_region:SL2.40ch12:7545973..7550927+ go_terms:GO:0006950 functional_description:"Protein kinase family protein (AHRD V1 ***- Q1PF03_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00014428g0004.1 protein AED:0.09 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|291; (*GB) gi|297745405|emb|CBI40485.3| (e_value=3e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G01080.1 (e_value=5e-107) | Symbols: TBL26 | TRICHOME BIREFRINGENCE-LIKE 26 | chr4:466626-468275 REVERSE LENGTH=442;; (*ITAG) Solyc01g095610.2.1 (e_value=2e-147) genomic_reference:SL2.40ch01 gene_region:78581914-78585268 transcript_region:SL2.40ch01:78581914..78585268+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q654T8_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00007727g0002.1 protein AED:0.63 eAED:0.63 QI:31|0|0|0.25|0|0.25|4|155|22 NbS00032574g0007.1 protein AED:0.21 eAED:0.23 QI:0|0.2|0|0.83|0.8|0.5|6|0|664; (*GB) gi|297744451|emb|CBI37713.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SZL7|FRS9_ARATH (e_value=0.0) Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2;; (*TAIR) AT4G38170.1 (e_value=0.0) | Symbols: FRS9 | FAR1-related sequence 9 | chr4:17904613-17906439 FORWARD LENGTH=545;; (*ITAG) Solyc07g008700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3667866-3675747 transcript_region:SL2.40ch07:3667866..3675747+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 9 (AHRD V1 ***- FRS9_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00028514g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|1|2|204|153; (*GB) gi|225426661|ref|XP_002281385.1| (e_value=6e-35) PREDICTED: uncharacterized protein LOC100241009 [Vitis vinifera];; (*TAIR) AT3G60890.2 (e_value=4e-13) | Symbols: ZPR2 | protein binding | chr3:22497024-22497442 REVERSE LENGTH=106;; (*ITAG) Solyc08g079690.2.1 (e_value=3e-50) genomic_reference:SL2.40ch08 gene_region:60334490-60335213 transcript_region:SL2.40ch08:60334490..60335213- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00028514g0001.1 protein AED:0.15 eAED:0.15 QI:87|1|0.8|1|0.5|0.6|5|733|161; (*GB) gi|30685952|ref|NP_194014.2| (e_value=2e-27) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q55720|YC49L_SYNY3 (e_value=4e-12) Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0608 PE=3 SV=1;; (*TAIR) AT4G22830.1 (e_value=6e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). | chr4:11990296-11991325 REVERSE LENGTH=193;; (*ITAG) Solyc08g079680.2.1 (e_value=5e-59) genomic_reference:SL2.40ch08 gene_region:60327092-60331700 transcript_region:SL2.40ch08:60327092..60331700+ functional_description:"Ycf49 protein (AHRD V1 *--- Q8DIZ4_THEEB); contains Interpro domain(s) IPR019634 Protein of unknown function DUF2499 "; NbS00058294g0006.1 protein AED:0.42 eAED:0.49 QI:0|0.42|0.37|0.62|0.71|0.75|8|0|307; (*GB) gi|296089470|emb|CBI39289.3| (e_value=2e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FIJ7|KADC2_ARATH (e_value=9e-108) Probable adenylate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At5g47840 PE=2 SV=1;; (*TAIR) AT5G47840.1 (e_value=7e-109) | Symbols: AMK2 | adenosine monophosphate kinase | chr5:19375488-19378058 FORWARD LENGTH=283;; (*ITAG) Solyc06g065270.2.1 (e_value=5e-122) genomic_reference:SL2.40ch06 gene_region:37095259-37099538 transcript_region:SL2.40ch06:37095259..37099538- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6STL7_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00034706g0008.1 protein AED:0.02 eAED:0.05 QI:0|1|0|1|1|1|2|0|133; (*GB) gi|255586840|ref|XP_002534031.1| (e_value=6e-50) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70780.1 (e_value=5e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc02g091540.2.1 (e_value=3e-65) genomic_reference:SL2.40ch02 gene_region:47381016-47381951 transcript_region:SL2.40ch02:47381016..47381951+ functional_description:"Senescence-associated protein (AHRD V1 **-- B6UEV1_MAIZE)"; NbS00034706g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|153; (*GB) gi|255586840|ref|XP_002534031.1| (e_value=4e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G70780.1 (e_value=6e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc02g091540.2.1 (e_value=1e-68) genomic_reference:SL2.40ch02 gene_region:47381016-47381951 transcript_region:SL2.40ch02:47381016..47381951+ functional_description:"Senescence-associated protein (AHRD V1 **-- B6UEV1_MAIZE)"; NbS00034706g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|70; (*GB) gi|115448477|ref|NP_001048018.1| (e_value=3e-32) Os02g0731200 [Oryza sativa Japonica Group];; (*SWP) sp|Q6Z6W2|MAD57_ORYSJ (e_value=8e-34) MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2;; (*TAIR) AT2G14210.1 (e_value=3e-32) | Symbols: ANR1, AGL44 | AGAMOUS-like 44 | chr2:6018841-6023585 FORWARD LENGTH=234;; (*ITAG) Solyc04g076680.2.1 (e_value=7e-37) genomic_reference:SL2.40ch04 gene_region:59173209-59179096 transcript_region:SL2.40ch04:59173209..59179096+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00035408g0006.1 protein AED:0.10 eAED:0.12 QI:0|1|0.66|1|1|1|3|0|799; (*GB) gi|225435343|ref|XP_002285243.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262081 [Vitis vinifera];; (*TAIR) AT5G60700.1 (e_value=0.0) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00035408g0005.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|224106776|ref|XP_002314281.1| (e_value=3e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60700.1 (e_value=8e-30) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=7e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00006912g0003.1 protein AED:0.06 eAED:0.06 QI:133|1|1|1|1|1|5|368|327; (*GB) gi|359359238|gb|AEV41137.1| (e_value=7e-97) D6-type cyclin [Populus x canadensis];; (*SWP) sp|Q9ZR04|CCD61_ARATH (e_value=6e-56) Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=2 SV=1;; (*TAIR) AT4G03270.1 (e_value=5e-57) | Symbols: CYCD6;1 | Cyclin D6;1 | chr4:1432375-1433691 REVERSE LENGTH=302;; (*ITAG) Solyc07g054950.1.1 (e_value=3e-136) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60425391-60427171 transcript_region:SL2.40ch07:60425391..60427171- go_terms:GO:0004693 functional_description:"Cyclin D2 (AHRD V1 **** Q71FH0_WHEAT); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004693 NbS00013779g0003.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|104; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=9e-20) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g005980.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3916175-3916960 transcript_region:SL2.40ch00:3916175..3916960+ functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00013779g0005.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|110; (*GB) gi|356506032|ref|XP_003521792.1| (e_value=4e-34) PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max];; (*SWP) sp|P56331|IF1A_ONOVI (e_value=2e-34) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=9e-35) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc01g095410.2.1 (e_value=9e-37) genomic_reference:SL2.40ch01 gene_region:78435197-78437089 transcript_region:SL2.40ch01:78435197..78437089+ go_terms:GO:0003743,GO:0033592 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743,GO:0033592 NbS00013779g0004.1 protein AED:0.31 eAED:0.31 QI:1112|0.42|0.62|0.75|0.57|0.75|8|265|121 NbS00013779g0012.1 protein AED:0.67 eAED:0.67 QI:0|0|0.33|0.33|1|1|3|0|163 NbS00038522g0005.1 protein AED:0.38 eAED:0.48 QI:77|0|0.5|1|0|0.5|2|471|51 NbS00038522g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|148; (*GB) gi|225441405|ref|XP_002278550.1| (e_value=8e-27) PREDICTED: uncharacterized protein LOC100248625 [Vitis vinifera];; (*TAIR) AT3G57930.2 (e_value=3e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:21447250-21447675 REVERSE LENGTH=141;; (*ITAG) Solyc10g078710.1.1 (e_value=6e-53) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:59763165-59763572 transcript_region:SL2.40ch10:59763165..59763572- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; NbS00036999g0002.1 protein AED:0.12 eAED:0.12 QI:368|0|0.5|1|0|0.5|2|0|511; (*GB) gi|225430155|ref|XP_002284751.1| (e_value=0.0) PREDICTED: 3-ketoacyl-CoA synthase 11 [Vitis vinifera];; (*SWP) sp|O48780|KCS11_ARATH (e_value=0.0) 3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1;; (*TAIR) AT2G26640.1 (e_value=0.0) | Symbols: KCS11 | 3-ketoacyl-CoA synthase 11 | chr2:11330094-11331623 FORWARD LENGTH=509;; (*ITAG) Solyc08g067410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53662353-53663870 transcript_region:SL2.40ch08:53662353..53663870- go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV6_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00036999g0006.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|141 NbS00000283g0017.1 protein AED:0.02 eAED:0.02 QI:648|1|1|1|1|1|5|509|453; (*GB) gi|147862850|emb|CAN80923.1| (e_value=0.0) hypothetical protein VITISV_013176 [Vitis vinifera];; (*SWP) sp|Q94A02|TAR2_ARATH (e_value=7e-155) Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1;; (*TAIR) AT4G24670.2 (e_value=5e-156) | Symbols: TAR2 | tryptophan aminotransferase related 2 | chr4:12727940-12730694 REVERSE LENGTH=440;; (*ITAG) Solyc03g112460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56913246-56918493 transcript_region:SL2.40ch03:56913246..56918493- go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- Q94EJ8_ALLFI); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00000283g0004.1 protein AED:0.02 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|224121738|ref|XP_002318660.1| (e_value=1e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FML4|LOB_ARATH (e_value=5e-70) Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1;; (*TAIR) AT5G63090.4 (e_value=4e-71) | Symbols: LOB | Lateral organ boundaries (LOB) domain family protein | chr5:25308723-25309283 REVERSE LENGTH=186;; (*ITAG) Solyc03g112430.1.1 (e_value=8e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56889858-56890448 transcript_region:SL2.40ch03:56889858..56890448- functional_description:"LOB domain protein 1 (AHRD V1 ***- B2KKZ3_ORYSJ); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00000283g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|153; (*GB) gi|2145023|gb|AAB58402.1| (e_value=1e-46) 15.5 kDa oleosin [Sesamum indicum];; (*SWP) sp|Q39165|OLEO2_ARATH (e_value=2e-33) Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=1 SV=1;; (*TAIR) AT5G40420.1 (e_value=2e-34) | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173622-16174740 REVERSE LENGTH=199;; (*ITAG) Solyc03g112440.1.1 (e_value=2e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56898083-56898544 transcript_region:SL2.40ch03:56898083..56898544+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- O04925_SESIN); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00000283g0018.1 protein AED:0.09 eAED:0.09 QI:278|0.5|0.8|1|0.25|0.2|5|429|431; (*GB) gi|356513715|ref|XP_003525556.1| (e_value=0.0) PREDICTED: histone deacetylase 6-like [Glycine max];; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=2e-177) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1;; (*TAIR) AT5G63110.1 (e_value=1e-178) | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471;; (*ITAG) Solyc06g071680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00000283g0020.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|0|0|2|255|523; (*GB) gi|225456926|ref|XP_002278116.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g64310-like [Vitis vinifera];; (*SWP) sp|Q9C7V5|PP104_ARATH (e_value=4e-174) Putative pentatricopeptide repeat-containing protein At1g64310 OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1;; (*TAIR) AT1G64310.1 (e_value=3e-175) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:23866053-23867711 FORWARD LENGTH=552;; (*ITAG) Solyc03g112420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56874284-56875951 transcript_region:SL2.40ch03:56874284..56875951+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KSS5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00030520g0001.1 protein AED:0.17 eAED:0.22 QI:0|0|0|1|1|1|2|0|319; (*GB) gi|209954727|dbj|BAG80554.1| (e_value=2e-127) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=2e-95) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21760.1 (e_value=5e-92) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043170.2.1 (e_value=5e-135) genomic_reference:SL2.40ch07 gene_region:54118851-54120724 transcript_region:SL2.40ch07:54118851..54120724- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q8RU72_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00030520g0003.1 protein AED:0.21 eAED:0.22 QI:264|0|0.5|1|0|0.5|2|0|399; (*GB) gi|14349251|dbj|BAB60720.1| (e_value=0.0) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=2e-146) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21760.1 (e_value=3e-128) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043170.2.1 (e_value=2e-160) genomic_reference:SL2.40ch07 gene_region:54118851-54120724 transcript_region:SL2.40ch07:54118851..54120724- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q8RU72_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00030520g0002.1 protein AED:0.45 eAED:0.76 QI:0|0|0|1|1|1|3|0|98; (*GB) gi|14349253|dbj|BAB60721.1| (e_value=2e-23) glucosyltransferase [Nicotiana tabacum];; (*ITAG) Solyc07g043170.2.1 (e_value=1e-15) genomic_reference:SL2.40ch07 gene_region:54118851-54120724 transcript_region:SL2.40ch07:54118851..54120724- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q8RU72_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00036814g0014.1 protein AED:0.04 eAED:0.04 QI:0|0.8|0.5|1|0.8|0.5|6|0|559; (*GB) gi|255584945|ref|XP_002533186.1| (e_value=0.0) AMP dependent CoA ligase, putative [Ricinus communis];; (*SWP) sp|O24145|4CL1_TOBAC (e_value=0.0) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*TAIR) AT1G51680.1 (e_value=0.0) | Symbols: 4CL1, 4CL.1, AT4CL1 | 4-coumarate:CoA ligase 1 | chr1:19159007-19161464 REVERSE LENGTH=561;; (*ITAG) Solyc07g008360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3141411-3145201 transcript_region:SL2.40ch07:3141411..3145201+ go_terms:GO:0016207 functional_description:"p-coumarate CoA-ligase 2 (AHRD V1 **** D5LNB5_SORAU); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00036814g0010.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|131; (*GB) gi|224140325|ref|XP_002323533.1| (e_value=7e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUI6|AP1G2_ARATH (e_value=2e-33) AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2;; (*TAIR) AT1G60070.1 (e_value=2e-34) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc05g005780.2.1 (e_value=2e-53) genomic_reference:SL2.40ch05 gene_region:593461-608931 transcript_region:SL2.40ch05:593461..608931+ go_terms:GO:0042802,GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0042802,GO:0030276 NbS00036814g0009.1 protein AED:0.36 eAED:0.36 QI:0|0.4|0.5|0.66|1|1|6|0|262; (*GB) gi|224143751|ref|XP_002325061.1| (e_value=3e-121) porin/voltage-dependent anion-selective channel protein [Populus trichocarpa];; (*SWP) sp|Q9FKM2|VDAC4_ARATH (e_value=4e-101) Mitochondrial outer membrane protein porin 4 OS=Arabidopsis thaliana GN=VDAC4 PE=2 SV=1;; (*TAIR) AT5G57490.1 (e_value=3e-102) | Symbols: VDAC4, ATVDAC4 | voltage dependent anion channel 4 | chr5:23283895-23285335 REVERSE LENGTH=274;; (*ITAG) Solyc07g008350.2.1 (e_value=5e-154) genomic_reference:SL2.40ch07 gene_region:3130909-3139460 transcript_region:SL2.40ch07:3130909..3139460+ go_terms:GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** B9IM03_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00004428g0003.1 protein AED:0.62 eAED:0.81 QI:0|0|0|0.25|1|1|4|0|441; (*GB) gi|224112565|ref|XP_002316229.1| (e_value=2e-50) fasciclin-like domain-containing protein [Populus trichocarpa];; (*TAIR) AT3G55820.1 (e_value=4e-31) | Symbols: | Fasciclin-like arabinogalactan family protein | chr3:20714041-20714655 FORWARD LENGTH=204;; (*ITAG) Solyc04g009610.2.1 (e_value=9e-33) genomic_reference:SL2.40ch04 gene_region:2996112-2997327 transcript_region:SL2.40ch04:2996112..2997327- functional_description:"Fasciclin-like domain-containing protein (Fragment) (AHRD V1 ***- B9HT02_POPTR)"; NbS00013017g0003.1 protein AED:0.23 eAED:0.23 QI:44|1|1|1|1|1|2|330|146; (*GB) gi|311893225|dbj|BAJ25784.1| (e_value=7e-95) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=9e-32) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70840.1 (e_value=5e-29) | Symbols: MLP31 | MLP-like protein 31 | chr1:26713170-26714014 REVERSE LENGTH=171;; (*ITAG) Solyc04g007760.2.1 (e_value=2e-83) genomic_reference:SL2.40ch04 gene_region:1435905-1437368 transcript_region:SL2.40ch04:1435905..1437368+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00043990g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|531; (*GB) gi|224119688|ref|XP_002318135.1| (e_value=2e-17) f-box family protein [Populus trichocarpa];; (*ITAG) Solyc03g119890.2.1 (e_value=4e-33) genomic_reference:SL2.40ch03 gene_region:62479105-62481531 transcript_region:SL2.40ch03:62479105..62481531+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00043990g0010.1 protein AED:0.24 eAED:0.25 QI:0|0.8|0.5|1|0.8|0.83|6|0|585; (*GB) gi|255580882|ref|XP_002531260.1| (e_value=0.0) Root phototropism protein, putative [Ricinus communis];; (*SWP) sp|Q9LFU0|DOT3_ARATH (e_value=0.0) Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1;; (*TAIR) AT5G10250.1 (e_value=0.0) | Symbols: DOT3 | Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607;; (*ITAG) Solyc05g051580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61095883-61101104 transcript_region:SL2.40ch05:61095883..61101104+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00043990g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|111; (*GB) gi|77999307|gb|ABB17000.1| (e_value=2e-37) ribosomal protein L23 family protein [Solanum tuberosum];; (*TAIR) AT4G39880.1 (e_value=8e-23) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:18504601-18505137 FORWARD LENGTH=178;; (*ITAG) Solyc11g011140.1.1 (e_value=7e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4216693-4218319 transcript_region:SL2.40ch11:4216693..4218319- go_terms:GO:0005840,GO:0000166 functional_description:"50S ribosomal protein L23 (AHRD V1 *-*- C0N8Z1_9GAMM); contains Interpro domain(s) IPR013025 Ribosomal protein L25/L23 "; GO:0005840,GO:0000166 NbS00012245g0004.1 protein AED:0.08 eAED:0.08 QI:73|1|1|1|0.5|0.4|5|204|162; (*GB) gi|147780183|emb|CAN75527.1| (e_value=9e-55) hypothetical protein VITISV_043600 [Vitis vinifera];; (*TAIR) AT3G56290.1 (e_value=8e-47) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20878743-20879541 REVERSE LENGTH=173;; (*ITAG) Solyc06g050170.2.1 (e_value=1e-57) genomic_reference:SL2.40ch06 gene_region:29143972-29153122 transcript_region:SL2.40ch06:29143972..29153122+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T761_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00031541g0006.1 protein AED:0.07 eAED:0.08 QI:0|1|0.33|1|1|0.66|3|0|135; (*GB) gi|89473698|gb|ABD72661.1| (e_value=1e-54) pollen tube RhoGDI2 [Nicotiana tabacum];; (*SWP) sp|Q9SFC6|GDIR_ARATH (e_value=1e-33) Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1;; (*TAIR) AT3G07880.1 (e_value=8e-35) | Symbols: SCN1 | Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240;; (*ITAG) Solyc04g014760.2.1 (e_value=2e-66) genomic_reference:SL2.40ch04 gene_region:5004799-5008790 transcript_region:SL2.40ch04:5004799..5008790- go_terms:GO:0017048,GO:0005094 functional_description:"RHO protein GDP dissociation inhibitor (AHRD V1 **** Q705X3_MEDTR); contains Interpro domain(s) IPR000406 RHO protein GDP dissociation inhibitor "; GO:0017048,GO:0005094 NbS00031541g0007.1 protein AED:0.24 eAED:0.24 QI:159|1|1|1|1|1|2|186|203; (*GB) gi|359495554|ref|XP_003635020.1| (e_value=3e-82) PREDICTED: uncharacterized protein LOC100853520 [Vitis vinifera];; (*SWP) sp|O65373|BAG5_ARATH (e_value=2e-65) BAG family molecular chaperone regulator 5, mitochondrial OS=Arabidopsis thaliana GN=BAG5 PE=1 SV=1;; (*TAIR) AT1G12060.1 (e_value=2e-66) | Symbols: ATBAG5, BAG5 | BCL-2-associated athanogene 5 | chr1:4076334-4076981 FORWARD LENGTH=215;; (*ITAG) Solyc04g014740.1.1 (e_value=2e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:5000220-5000519 transcript_region:SL2.40ch04:5000220..5000519+ go_terms:GO:0006915 functional_description:"Bcl-2-associated athanogene-like protein (AHRD V1 *-*- D1MIX4_VITVI); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00015358g0005.1 protein AED:0.12 eAED:0.24 QI:0|0|0|1|1|1|3|0|133; (*GB) gi|28200396|gb|AAO31795.1| (e_value=2e-58) SP9D [Solanum lycopersicum];; (*SWP) sp|P93003|TFL1_ARATH (e_value=4e-42) Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1;; (*TAIR) AT5G03840.1 (e_value=3e-43) | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanolamine-binding protein) family protein | chr5:1024760-1025796 REVERSE LENGTH=177;; (*ITAG) Solyc09g009560.1.1 (e_value=4e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2968569-2971135 transcript_region:SL2.40ch09:2968569..2971135+ go_terms:GO:0008429 functional_description:"SELF PRUNING 9D"; GO:0008429 NbS00043723g0002.1 protein AED:0.01 eAED:0.01 QI:646|0.5|0.66|1|0.5|0.66|3|282|323; (*GB) gi|85068594|gb|ABC69377.1| (e_value=0.0) CYP81B2v2 [Nicotiana tabacum];; (*SWP) sp|O65790|C81F1_ARATH (e_value=1e-103) Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2;; (*TAIR) AT4G37400.1 (e_value=6e-115) | Symbols: CYP81F3 | cytochrome P450, family 81, subfamily F, polypeptide 3 | chr4:17584096-17586197 FORWARD LENGTH=501;; (*ITAG) Solyc04g078290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60642301-60645358 transcript_region:SL2.40ch04:60642301..60645358- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003055g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|189 NbS00008355g0002.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|225438797|ref|XP_002283187.1| (e_value=7e-162) PREDICTED: uncharacterized protein LOC100259508 [Vitis vinifera];; (*TAIR) AT5G67210.1 (e_value=1e-149) | Symbols: | Protein of unknown function (DUF579) | chr5:26819019-26819972 FORWARD LENGTH=317;; (*ITAG) Solyc02g093090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48596619-48597545 transcript_region:SL2.40ch02:48596619..48597545- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV20_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00008355g0015.1 protein AED:0.42 eAED:0.43 QI:0|0.71|0.75|0.87|0.85|0.87|8|0|259; (*GB) gi|15234564|ref|NP_195409.1| (e_value=4e-74) cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|O23193|CBSX1_ARATH (e_value=1e-75) CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2;; (*TAIR) AT4G36910.1 (e_value=1e-76) | Symbols: LEJ2, CDCP2 | Cystathionine beta-synthase (CBS) family protein | chr4:17391016-17393218 REVERSE LENGTH=236;; (*ITAG) Solyc02g064950.2.1 (e_value=4e-107) genomic_reference:SL2.40ch02 gene_region:30629517-30635896 transcript_region:SL2.40ch02:30629517..30635896- go_terms:GO:0008152 functional_description:"CBS domain-containing protein-like (AHRD V1 ***- B8AP73_ORYSI); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0008152 NbS00008355g0016.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|57|293; (*GB) gi|224105587|ref|XP_002313864.1| (e_value=5e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W3M4|Y4744_ARATH (e_value=1e-72) Uncharacterized protein At4g06744 OS=Arabidopsis thaliana GN=At4g06744 PE=2 SV=1;; (*TAIR) AT3G19320.1 (e_value=2e-99) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6696395-6698073 REVERSE LENGTH=493;; (*ITAG) Solyc02g064940.1.1 (e_value=7e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:30624387-30625781 transcript_region:SL2.40ch02:30624387..30625781+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00008355g0019.1 protein AED:0.36 eAED:0.39 QI:0|0|0|1|0.33|0.25|4|0|168 NbS00022685g0004.1 protein AED:0.12 eAED:0.14 QI:0|0|0|0.75|0.66|0.5|4|0|339; (*GB) gi|225424719|ref|XP_002265302.1| (e_value=5e-152) PREDICTED: threonyl-tRNA synthetase, mitochondrial [Vitis vinifera];; (*SWP) sp|O04630|SYTM_ARATH (e_value=1e-139) Threonine--tRNA ligase, mitochondrial OS=Arabidopsis thaliana GN=THRRS PE=2 SV=3;; (*TAIR) AT5G26830.1 (e_value=7e-141) | Symbols: | Threonyl-tRNA synthetase | chr5:9437351-9441568 FORWARD LENGTH=709;; (*ITAG) Solyc08g074550.2.1 (e_value=3e-177) genomic_reference:SL2.40ch08 gene_region:55812388-55826514 transcript_region:SL2.40ch08:55812388..55826514+ go_terms:GO:0006412,GO:0005737,GO:0000166 functional_description:"Threonyl-tRNA synthetase (AHRD V1 ***- Q17LW8_AEDAE); contains Interpro domain(s) IPR002320 Threonyl-tRNA synthetase, class IIa "; GO:0006412,GO:0005737,GO:0000166 NbS00022685g0005.1 protein AED:0.09 eAED:0.09 QI:105|1|1|1|0|0|2|2026|136; (*ITAG) Solyc07g064760.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63996693-63997206 transcript_region:SL2.40ch07:63996693..63997206- functional_description:"Unknown Protein (AHRD V1)"; NbS00046472g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|225435052|ref|XP_002284344.1| (e_value=3e-64) PREDICTED: probable histone H2B.1-like [Vitis vinifera];; (*SWP) sp|O22582|H2B_GOSHI (e_value=5e-65) Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3;; (*TAIR) AT5G59910.1 (e_value=8e-65) | Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150;; (*ITAG) Solyc06g005390.1.1 (e_value=7e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:401311-401754 transcript_region:SL2.40ch06:401311..401754+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- D7LK79_ARALY); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00054407g0008.1 protein AED:0.06 eAED:0.06 QI:604|0.85|1|1|1|1|8|533|468; (*GB) gi|297740054|emb|CBI30236.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LZR3|CSLA9_ARATH (e_value=0.0) Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1;; (*TAIR) AT5G03760.1 (e_value=0.0) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533;; (*ITAG) Solyc10g083670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62769996-62776321 transcript_region:SL2.40ch10:62769996..62776321- go_terms:GO:0051753 functional_description:"Cellulose synthase-like C2 glycosyltransferase family 2 (AHRD V1 **-* A9RNK0_PHYPA); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0051753 NbS00054407g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|255575353|ref|XP_002528579.1| (e_value=2e-98) peroxiredoxin, putative [Ricinus communis];; (*SWP) sp|Q949U7|PRX2E_ARATH (e_value=1e-87) Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2;; (*TAIR) AT3G52960.1 (e_value=8e-89) | Symbols: | Thioredoxin superfamily protein | chr3:19639699-19640403 FORWARD LENGTH=234;; (*ITAG) Solyc10g083650.1.1 (e_value=2e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62763114-62763800 transcript_region:SL2.40ch10:62763114..62763800- go_terms:GO:0016491,GO:0045454 functional_description:"Peroxiredoxin ahpC/TSA family (AHRD V1 **-- Q1YGN4_MOBAS); contains Interpro domain(s) IPR013740 Redoxin "; GO:0016491,GO:0045454 NbS00030500g0015.1 protein AED:0.03 eAED:0.03 QI:0|0.33|0.25|1|0.33|0.25|4|281|1255; (*GB) gi|75261516|sp|Q6L3L0.1|R1B23_SOLDE (e_value=0.0) RecName: Full=Putative late blight resistance protein homolog R1B-23;; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=0.0) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*TAIR) AT5G48620.1 (e_value=2e-63) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:19717406-19720932 FORWARD LENGTH=908;; (*ITAG) Solyc05g007350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1970981-1974797 transcript_region:SL2.40ch05:1970981..1974797- go_terms:GO:0006952,GO:0007049,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0007049,GO:0006915 NbS00030500g0011.1 protein AED:0.20 eAED:0.20 QI:0|1|0.85|1|1|0.85|7|0|994; (*GB) gi|225431954|ref|XP_002272609.1| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100258583 [Vitis vinifera];; (*TAIR) AT5G58040.1 (e_value=2e-19) | Symbols: ATFIP1[V], FIPS5, ATFIPS5, FIP1[V] | homolog of yeast FIP1 [V] | chr5:23488865-23494000 FORWARD LENGTH=1196;; (*ITAG) Solyc12g099280.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64816628-64825127 transcript_region:SL2.40ch12:64816628..64825127+ functional_description:"Pre-mRNA polyadenylation factor fip1 (AHRD V1 *-*- B6JX34_SCHJY); contains Interpro domain(s) IPR007854 Fip1 "; NbS00030500g0013.1 protein AED:0.06 eAED:0.06 QI:178|0.91|1|1|0.75|0.92|13|413|528; (*GB) gi|225431946|ref|XP_002277743.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase 22A1 [Vitis vinifera];; (*SWP) sp|Q0WSF1|AL221_ARATH (e_value=0.0) Aldehyde dehydrogenase 22A1 OS=Arabidopsis thaliana GN=ALDH22A1 PE=2 SV=2;; (*TAIR) AT3G66658.1 (e_value=0.0) | Symbols: ALDH22A1 | aldehyde dehydrogenase 22A1 | chr3:2095471-2099013 REVERSE LENGTH=554;; (*ITAG) Solyc12g099290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64827822-64834745 transcript_region:SL2.40ch12:64827822..64834745- go_terms:GO:0005576,GO:0055114 functional_description:"Aldehyde dehydrogenase (AHRD V1 ***- A2Q2X1_MEDTR); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0005576,GO:0055114 NbS00030500g0003.1 protein AED:0.15 eAED:0.15 QI:351|0|0.5|1|0|0.5|2|0|107; (*GB) gi|82621136|gb|ABB86256.1| (e_value=9e-73) eukaryotic translation initiation factor 2 beta subunit-like [Solanum tuberosum];; (*SWP) sp|O24473|IF2B_WHEAT (e_value=5e-69) Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1;; (*TAIR) AT5G20920.2 (e_value=8e-65) | Symbols: EIF2 BETA | eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=267;; (*ITAG) Solyc06g082580.2.1 (e_value=4e-75) genomic_reference:SL2.40ch06 gene_region:44640508-44646549 transcript_region:SL2.40ch06:44640508..44646549- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 beta subunit-like (AHRD V1 **** Q2V9B2_SOLTU); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0005515,GO:0003743 NbS00003622g0213.1 protein AED:0.27 eAED:0.27 QI:0|0.90|0.75|1|0.90|0.91|12|0|582 NbS00047774g0002.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|143; (*ITAG) Solyc03g113200.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:57483763-57484170 transcript_region:SL2.40ch03:57483763..57484170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047774g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|1053; (*GB) gi|225456679|ref|XP_002267314.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262158 [Vitis vinifera];; (*TAIR) AT1G74720.1 (e_value=0.0) | Symbols: QKY | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr1:28075173-28078418 FORWARD LENGTH=1081;; (*ITAG) Solyc03g113190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57479187-57482330 transcript_region:SL2.40ch03:57479187..57482330+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00023028g0005.1 protein AED:0.07 eAED:0.14 QI:35|0.33|0.25|1|0.33|0.25|4|0|325; (*GB) gi|2499614|sp|Q40517.1|NTF3_TOBAC (e_value=0.0) RecName: Full=Mitogen-activated protein kinase homolog NTF3; AltName: Full=P43;; (*SWP) sp|Q40517|NTF3_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF3 OS=Nicotiana tabacum GN=NTF3 PE=1 SV=1;; (*TAIR) AT1G10210.2 (e_value=2e-174) | Symbols: ATMPK1, MPK1 | mitogen-activated protein kinase 1 | chr1:3349579-3350776 FORWARD LENGTH=370;; (*ITAG) Solyc04g080730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62421080-62429518 transcript_region:SL2.40ch04:62421080..62429518+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 9 (AHRD V1 **** D9J1Y9_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016908 NbS00054116g0010.1 protein AED:0.15 eAED:0.15 QI:129|1|0.66|1|1|1|3|0|327; (*GB) gi|255538110|ref|XP_002510120.1| (e_value=0.0) hspc200, putative [Ricinus communis];; (*SWP) sp|Q10170|RMT2_SCHPO (e_value=2e-52) Arginine N-methyltransferase 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rmt2 PE=2 SV=2;; (*TAIR) AT5G65860.2 (e_value=0.0) | Symbols: | ankyrin repeat family protein | chr5:26347706-26348686 REVERSE LENGTH=326;; (*ITAG) Solyc04g078120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60543716-60546994 transcript_region:SL2.40ch04:60543716..60546994- go_terms:GO:0005515,GO:0019702 functional_description:"Arginine N-methyltransferase 2 (AHRD V1 **** B6UHM3_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0019702 NbS00054116g0001.1 protein AED:0.18 eAED:0.18 QI:15|-1|0|1|-1|1|1|0|115; (*GB) gi|4204575|gb|AAD10774.1| (e_value=2e-60) cytochrome b5 DIF-F [Petunia x hybrida];; (*SWP) sp|P40934|CYB5_BRAOB (e_value=2e-14) Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1;; (*TAIR) AT5G53560.1 (e_value=2e-15) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc04g078140.2.1 (e_value=3e-48) genomic_reference:SL2.40ch04 gene_region:60559327-60560571 transcript_region:SL2.40ch04:60559327..60560571- go_terms:GO:0045153 functional_description:"Cytochrome B5 (AHRD V1 **** Q9ZSP7_PETHY); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153 NbS00054116g0014.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|65 NbS00054116g0015.1 protein AED:0.16 eAED:0.16 QI:507|1|0.83|1|0.6|0.33|6|731|351; (*GB) gi|302142224|emb|CBI19427.3| (e_value=1e-105) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27700.1 (e_value=1e-64) | Symbols: | Syntaxin/t-SNARE family protein | chr1:9640394-9641752 REVERSE LENGTH=297;; (*ITAG) Solyc04g078130.2.1 (e_value=8e-180) genomic_reference:SL2.40ch04 gene_region:60551977-60559078 transcript_region:SL2.40ch04:60551977..60559078+ go_terms:GO:0016020 functional_description:"Clathrin-coat assembly protein-like (AHRD V1 **-- Q6Z9Z3_ORYSJ); contains Interpro domain(s) IPR015260 Syntaxin 6, N-terminal "; GO:0016020 NbS00054116g0012.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|767; (*GB) gi|350537151|ref|NP_001234282.1| (e_value=0.0) SBT1 protein precursor [Solanum lycopersicum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc04g078110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60540247-60542547 transcript_region:SL2.40ch04:60540247..60542547+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00018801g0001.1 protein AED:0.21 eAED:0.21 QI:488|0.77|0.9|1|0.44|0.5|10|2120|137; (*GB) gi|313760923|gb|ADR79437.1| (e_value=1e-69) glycyl-tRNA synthetase-like protein [Liriodendron tulipifera];; (*SWP) sp|O23627|SYGM1_ARATH (e_value=6e-63) Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1;; (*TAIR) AT1G29880.1 (e_value=5e-64) | Symbols: | glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729;; (*ITAG) Solyc03g118170.2.1 (e_value=5e-78) genomic_reference:SL2.40ch03 gene_region:61164519-61169758 transcript_region:SL2.40ch03:61164519..61169758- go_terms:GO:0004820,GO:0046983 functional_description:"Glycyl-tRNA synthetase (AHRD V1 **** D7KEM8_ARALY); contains Interpro domain(s) IPR002315 Glycyl-tRNA synthetase, alpha2 dimer "; GO:0004820,GO:0046983 NbS00018801g0013.1 protein AED:0.12 eAED:0.12 QI:376|1|1|1|0.33|0.28|7|301|276; (*GB) gi|225456509|ref|XP_002284696.1| (e_value=6e-114) PREDICTED: random slug protein 5 [Vitis vinifera];; (*SWP) sp|Q9M0R2|PATL5_ARATH (e_value=1e-19) Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2;; (*TAIR) AT1G01630.1 (e_value=1e-108) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc03g118150.2.1 (e_value=6e-157) genomic_reference:SL2.40ch03 gene_region:61156088-61158567 transcript_region:SL2.40ch03:61156088..61158567+ go_terms:GO:0008526 functional_description:"Sec14-like (Fragment) (AHRD V1 **-- Q6R655_MELLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00018801g0009.1 protein AED:0.28 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|412; (*GB) gi|7227894|sp|Q40505.1|FL2_TOBAC (e_value=0.0) RecName: Full=Floricaula/leafy homolog 2; AltName: Full=NFL2;; (*SWP) sp|Q40505|FL2_TOBAC (e_value=0.0) Floricaula/leafy homolog 2 OS=Nicotiana tabacum GN=FL2 PE=2 SV=1;; (*TAIR) AT5G61850.1 (e_value=4e-144) | Symbols: LFY, LFY3 | floral meristem identity control protein LEAFY (LFY) | chr5:24844295-24846933 FORWARD LENGTH=420;; (*ITAG) Solyc03g118160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61162449-61164404 transcript_region:SL2.40ch03:61162449..61164404+ go_terms:GO:0008134 functional_description:"FLORICAULA/LEAFY-like protein (AHRD V1 ***- Q9LDP5_SOLLC); contains Interpro domain(s) IPR002910 Floricaula/leafy protein "; GO:0008134 NbS00060915g0004.1 protein AED:0.17 eAED:0.17 QI:104|1|1|1|0.8|0.66|6|171|123; (*GB) gi|357168564|ref|XP_003581707.1| (e_value=1e-66) PREDICTED: autophagy-related protein 8C-like [Brachypodium distachyon];; (*SWP) sp|Q6Z1D5|ATG8C_ORYSJ (e_value=5e-67) Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1;; (*TAIR) AT1G62040.2 (e_value=3e-66) | Symbols: ATG8C | Ubiquitin-like superfamily protein | chr1:22932782-22934253 FORWARD LENGTH=133;; (*ITAG) Solyc03g031650.2.1 (e_value=3e-74) genomic_reference:SL2.40ch03 gene_region:8384152-8387089 transcript_region:SL2.40ch03:8384152..8387089- go_terms:GO:0008017 functional_description:"Autophagy-related protein 8 (AHRD V1 **-- C1EJ88_9CHLO); contains Interpro domain(s) IPR004241 Light chain 3 (LC3) "; GO:0008017 NbS00002594g0013.1 protein AED:0.22 eAED:0.22 QI:296|1|0.91|1|1|1|12|193|376; (*GB) gi|350539791|ref|NP_001234274.1| (e_value=0.0) mercaptopyruvate sulfurtransferase-like protein [Solanum lycopersicum];; (*SWP) sp|O64530|STR1_ARATH (e_value=0.0) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.1 (e_value=0.0) | Symbols: ST1, ATMST1, MST1, ATRDH1, STR1 | mercaptopyruvate sulfurtransferase 1 | chr1:29800824-29803679 FORWARD LENGTH=379;; (*ITAG) Solyc07g066580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65198760-65204479 transcript_region:SL2.40ch07:65198760..65204479+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like IPR001307 Thiosulphate sulfurtransferase, conserved site "; GO:0004792,GO:0016784 NbS00002594g0012.1 protein AED:0.14 eAED:0.15 QI:0|0.42|0.37|0.75|0.42|0.37|8|0|332; (*GB) gi|2499498|sp|Q42962.1|PGKY_TOBAC (e_value=0.0) RecName: Full=Phosphoglycerate kinase, cytosolic;; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=0.0) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=0.0) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00002594g0014.1 protein AED:0.38 eAED:0.41 QI:16|0|0|1|0|0|3|0|99; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-13) hypothetical protein [Nicotiana tabacum]; NbS00022775g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|0|223; (*GB) gi|255562637|ref|XP_002522324.1| (e_value=3e-98) 50S ribosomal protein L25, putative [Ricinus communis];; (*SWP) sp|Q1GSP2|RL25_SPHAL (e_value=3e-15) 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplY PE=3 SV=1;; (*TAIR) AT5G66860.1 (e_value=2e-86) | Symbols: | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain | chr5:26701233-26702531 REVERSE LENGTH=249;; (*ITAG) Solyc02g090420.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:46560506-46563942 transcript_region:SL2.40ch02:46560506..46563942+ go_terms:GO:0005840,GO:0006412 functional_description:"50S ribosomal protein L25 (AHRD V1 ***- Q0EYU4_9PROT); contains Interpro domain(s) IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain "; GO:0005840,GO:0006412 NbS00022775g0007.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|663; (*GB) gi|350534406|ref|NP_001233883.1| (e_value=0.0) receptor-like protein kinase precursor [Solanum lycopersicum];; (*SWP) sp|C0LGU0|RLK_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1;; (*TAIR) AT2G07040.1 (e_value=0.0) | Symbols: ATPRK2A, PRK2A | Leucine-rich repeat protein kinase family protein | chr2:2916621-2918760 FORWARD LENGTH=647;; (*ITAG) Solyc05g047570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58181092-58184477 transcript_region:SL2.40ch05:58181092..58184477- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00001343g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|111073729|dbj|BAF02553.1| (e_value=1e-44) hypothetical protein [Nicotiana benthamiana]; NbS00001343g0101.1 protein AED:0.05 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|441 NbS00001343g0115.1 protein AED:0.28 eAED:0.31 QI:0|1|0.66|1|1|0.83|6|0|299 NbS00001343g0120.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|0.5|0.66|3|379|89 NbS00001343g0119.1 protein AED:0.19 eAED:0.19 QI:424|0.5|0.33|1|0|0|3|416|53 NbS00001343g0111.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|101 NbS00012383g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.81|0.83|1|0.81|0.83|12|1571|277; (*GB) gi|224080383|ref|XP_002306120.1| (e_value=3e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|P24859|SEC14_KLULA (e_value=4e-39) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT4G39170.1 (e_value=2e-145) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr4:18240887-18243621 FORWARD LENGTH=614;; (*ITAG) Solyc10g053970.1.1 (e_value=1e-170) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49767739-49773903 transcript_region:SL2.40ch10:49767739..49773903- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T026_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00016917g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|180; (*GB) gi|147780251|emb|CAN65744.1| (e_value=3e-35) hypothetical protein VITISV_037761 [Vitis vinifera];; (*TAIR) AT3G17460.1 (e_value=1e-20) | Symbols: | PHD finger family protein | chr3:5976949-5977545 REVERSE LENGTH=198;; (*ITAG) Solyc03g114270.1.1 (e_value=1e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58347361-58347993 transcript_region:SL2.40ch03:58347361..58347993+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016917g0108.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|153 NbS00020789g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|169; (*ITAG) Solyc04g057950.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54212476-54214493 transcript_region:SL2.40ch04:54212476..54214493+ functional_description:"F-box family protein (AHRD V1 ***- B9GFH4_POPTR); contains Interpro domain(s) IPR013101 Leucine-rich repeat 2 "; NbS00010505g0010.1 protein AED:0.12 eAED:0.14 QI:80|0.33|0.25|1|0.66|0.5|4|0|317; (*GB) gi|225443980|ref|XP_002274093.1| (e_value=1e-85) PREDICTED: F-box protein SKIP19 [Vitis vinifera];; (*SWP) sp|Q9M0U9|SKI19_ARATH (e_value=5e-78) F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1;; (*TAIR) AT4G05460.1 (e_value=4e-79) | Symbols: | RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302;; (*ITAG) Solyc08g006940.2.1 (e_value=6e-132) genomic_reference:SL2.40ch08 gene_region:1501362-1504493 transcript_region:SL2.40ch08:1501362..1504493- go_terms:GO:0005515,GO:0004842 functional_description:"F-box family protein (AHRD V1 ***- D7M2J7_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515,GO:0004842 NbS00010505g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|130; (*GB) gi|58892561|gb|AAW83128.1| (e_value=1e-73) photosystem I reaction center subunit X PSI-K [Nicotiana benthamiana];; (*SWP) sp|Q9SUI5|PSAK_ARATH (e_value=2e-62) Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2;; (*TAIR) AT1G30380.1 (e_value=2e-63) | Symbols: PSAK | photosystem I subunit K | chr1:10722325-10723013 FORWARD LENGTH=130;; (*ITAG) Solyc08g006930.2.1 (e_value=7e-68) genomic_reference:SL2.40ch08 gene_region:1496863-1500142 transcript_region:SL2.40ch08:1496863..1500142- go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit X psaK (AHRD V1 ***- Q84QE6_TOBAC); contains Interpro domain(s) IPR017493 Photosystem I reaction center, PsaK, plant "; GO:0016020 NbS00010505g0011.1 protein AED:0.24 eAED:0.24 QI:162|0.66|0.75|1|0|0.25|4|309|131; (*GB) gi|255585616|ref|XP_002533495.1| (e_value=1e-75) 60S ribosomal protein L32, putative [Ricinus communis];; (*SWP) sp|P49211|RL321_ARATH (e_value=9e-73) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=7e-74) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=9e-74) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "; GO:0003735,GO:0005515 NbS00052604g0001.1 protein AED:0.11 eAED:0.11 QI:120|1|0.66|1|0.5|0.33|3|0|340; (*GB) gi|297737756|emb|CBI26957.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C9N3|C3H14_ARATH (e_value=7e-67) Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1;; (*TAIR) AT1G66810.1 (e_value=5e-68) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:24927613-24928619 REVERSE LENGTH=310;; (*ITAG) Solyc02g086430.2.1 (e_value=1e-106) genomic_reference:SL2.40ch02 gene_region:43675564-43676632 transcript_region:SL2.40ch02:43675564..43676632+ go_terms:GO:0008270 functional_description:"Zinc finger protein 36 C3H type-like 1 (Fragment) (AHRD V1 *-*- C5H180_ACRGR); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00006780g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.33|0.66|0.5|0.33|3|0|120; (*GB) gi|75326538|sp|Q75VR0.1|TPC1B_TOBAC (e_value=4e-65) RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B;; (*SWP) sp|Q75VR0|TPC1B_TOBAC (e_value=1e-66) Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=8e-46) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=3e-64) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00001922g0009.1 protein AED:0.01 eAED:0.01 QI:318|1|0.5|1|1|1|2|0|196; (*GB) gi|225453046|ref|XP_002267312.1| (e_value=2e-83) PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera];; (*TAIR) AT3G04510.1 (e_value=2e-72) | Symbols: LSH2 | Protein of unknown function (DUF640) | chr3:1215812-1216417 REVERSE LENGTH=201;; (*ITAG) Solyc04g009980.2.1 (e_value=3e-94) genomic_reference:SL2.40ch04 gene_region:3297717-3299388 transcript_region:SL2.40ch04:3297717..3299388+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00001922g0008.1 protein AED:0.21 eAED:0.23 QI:6|1|0.81|1|1|1|11|49|1301; (*GB) gi|359488087|ref|XP_002266063.2| (e_value=0.0) PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=0.0) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G08620.2 (e_value=0.0) | Symbols: PKDM7D | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:2737554-2743370 FORWARD LENGTH=1209;; (*ITAG) Solyc04g009990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3303089-3310711 transcript_region:SL2.40ch04:3303089..3310711- go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00033197g0010.1 protein AED:0.03 eAED:0.03 QI:357|1|1|1|1|1|4|724|459; (*GB) gi|225436482|ref|XP_002275679.1| (e_value=0.0) PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Vitis vinifera];; (*SWP) sp|Q9ZUV3|IRX7_ARATH (e_value=0.0) Probable glucuronoxylan glucuronosyltransferase IRX7 OS=Arabidopsis thaliana GN=IRX7 PE=2 SV=1;; (*TAIR) AT2G28110.1 (e_value=0.0) | Symbols: FRA8, IRX7 | Exostosin family protein | chr2:11978024-11979641 REVERSE LENGTH=448;; (*ITAG) Solyc11g066320.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49129086-49130693 transcript_region:SL2.40ch11:49129086..49130693+ go_terms:GO:0016020 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8I7L6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00033197g0011.1 protein AED:0.26 eAED:0.26 QI:0|1|0.83|1|1|1|6|0|261; (*GB) gi|359473203|ref|XP_002265544.2| (e_value=5e-141) PREDICTED: signal recognition particle receptor subunit beta-like [Vitis vinifera];; (*SWP) sp|Q54XX1|SRPRB_DICDI (e_value=2e-27) Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1;; (*TAIR) AT5G05670.1 (e_value=2e-132) | Symbols: | signal recognition particle binding | chr5:1695916-1697534 REVERSE LENGTH=260;; (*ITAG) Solyc03g112450.2.1 (e_value=2e-168) genomic_reference:SL2.40ch03 gene_region:56900116-56907702 transcript_region:SL2.40ch03:56900116..56907702- go_terms:GO:0005515 functional_description:"Signal recognition particle receptor beta subunit-like protein (AHRD V1 ***- Q0WRZ7_ARATH); contains Interpro domain(s) IPR019009 Signal recognition particle receptor, beta subunit "; GO:0005515 NbS00033197g0009.1 protein AED:0.07 eAED:0.07 QI:123|1|0.83|1|0.6|0.66|6|0|566; (*GB) gi|225425575|ref|XP_002267079.1| (e_value=0.0) PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LDA9|CAF2P_ARATH (e_value=0.0) CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana GN=At1g23400 PE=2 SV=1;; (*TAIR) AT1G23400.1 (e_value=0.0) | Symbols: CAF2, ATCAF2 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr1:8312199-8314740 REVERSE LENGTH=564;; (*ITAG) Solyc11g066300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49109493-49114483 transcript_region:SL2.40ch11:49109493..49114483+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 2, chloroplastic (AHRD V1 ***- CAF2P_ARATH); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00033197g0012.1 protein AED:0.35 eAED:0.35 QI:62|0.75|0.77|1|0|0|9|533|314; (*GB) gi|240254342|ref|NP_683487.4| (e_value=1e-60) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G70505.1 (e_value=3e-63) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 141 Blast hits to 140 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:26570647-26572463 FORWARD LENGTH=358;; (*ITAG) Solyc11g066310.1.1 (e_value=7e-104) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49117821-49121375 transcript_region:SL2.40ch11:49117821..49121375+ functional_description:"mRNA clone RAFL24-05-D16 (AHRD V1 ***- Q67YW5_ARATH)"; NbS00050786g0006.1 protein AED:0.19 eAED:0.46 QI:181|0|0.5|1|0|0|2|0|92 NbS00050786g0007.1 protein AED:0.14 eAED:0.14 QI:0|0.25|0|0.6|0.75|0.6|5|0|618; (*GB) gi|359479751|ref|XP_002267241.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SA69|Y1301_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1;; (*TAIR) AT1G03010.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634;; (*ITAG) Solyc09g074630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61949651-61951803 transcript_region:SL2.40ch09:61949651..61951803+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KCA4_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00007742g0008.1 protein AED:0.00 eAED:0.00 QI:131|1|1|1|0|0.5|2|111|145; (*ITAG) Solyc11g011160.1.1 (e_value=8e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:4235818-4237261 transcript_region:SL2.40ch11:4235818..4237261- go_terms:GO:0005634,GO:0003677 functional_description:"High mobility group protein (AHRD V1 *--- Q42461_CANGL); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677 NbS00007742g0006.1 protein AED:0.40 eAED:0.42 QI:0|0.5|0.42|1|1|1|7|0|319; (*GB) gi|94466659|emb|CAJ44458.1| (e_value=2e-110) ALY protein [Nicotiana benthamiana];; (*SWP) sp|Q9JJW6|REFP2_MOUSE (e_value=7e-25) RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1;; (*TAIR) AT5G37720.1 (e_value=5e-52) | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-14983978 REVERSE LENGTH=288;; (*ITAG) Solyc04g014460.2.1 (e_value=2e-98) genomic_reference:SL2.40ch04 gene_region:4691348-4695742 transcript_region:SL2.40ch04:4691348..4695742+ go_terms:GO:0003729 functional_description:"RNA binding protein (AHRD V1 *--* C1N7F4_MICPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003729 NbS00058646g0004.1 protein AED:0.14 eAED:0.14 QI:125|0.91|0.92|1|0.75|0.76|13|123|431; (*GB) gi|225461927|ref|XP_002265837.1| (e_value=0.0) PREDICTED: NAD-dependent deacetylase sirtuin-6 [Vitis vinifera];; (*SWP) sp|Q9FE17|SIR1_ARATH (e_value=0.0) NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana GN=SRT1 PE=2 SV=1;; (*TAIR) AT5G55760.1 (e_value=0.0) | Symbols: SRT1 | sirtuin 1 | chr5:22567282-22570716 FORWARD LENGTH=473;; (*ITAG) Solyc07g065550.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64486252-64496779 transcript_region:SL2.40ch07:64486252..64496779+ go_terms:GO:0045449 functional_description:"NAD-dependent deacetylase (AHRD V1 *-*- B1QRD7_CLOBO); contains Interpro domain(s) IPR003000 NAD-dependent histone deacetylase, silent information regulator Sir2 "; GO:0045449 NbS00052474g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=0.0) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=1e-127) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT5G49690.1 (e_value=3e-68) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc04g081830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63313830-63315194 transcript_region:SL2.40ch04:63313830..63315194+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00030420g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|132 NbS00030420g0001.1 protein AED:0.35 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|69; (*TAIR) AT5G49400.1 (e_value=1e-11) | Symbols: | zinc knuckle (CCHC-type) family protein | chr5:20031154-20031981 FORWARD LENGTH=275;; (*ITAG) Solyc01g060030.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:62258951-62260745 transcript_region:SL2.40ch01:62258951..62260745+ functional_description:"Zinc finger CCHC domain-containing protein 10 (AHRD V1 *-*- B6TKA1_MAIZE)"; NbS00030420g0010.1 protein AED:0.36 eAED:0.44 QI:201|0.25|0.2|1|0.5|0.4|5|0|376; (*GB) gi|359479250|ref|XP_002275790.2| (e_value=3e-103) PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Vitis vinifera];; (*SWP) sp|Q9LFC5|PP360_ARATH (e_value=3e-83) Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1;; (*TAIR) AT5G01110.1 (e_value=2e-84) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:42114-44303 REVERSE LENGTH=729;; (*ITAG) Solyc02g088150.1.1 (e_value=6e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44897966-44898599 transcript_region:SL2.40ch02:44897966..44898599+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00001722g0007.1 protein AED:0.06 eAED:0.06 QI:0|1|0.83|1|1|0.83|6|0|769; (*GB) gi|371917284|dbj|BAL44718.1| (e_value=0.0) SlArf/Xyl3 [Solanum lycopersicum];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=0.0) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57420673-57423910 transcript_region:SL2.40ch04:57420673..57423910- go_terms:GO:0009044 functional_description:"Beta-D-xylosidase (AHRD V1 **** Q8W011_HORVU); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00007533g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0|1|1|1|2|0|782; (*GB) gi|225428900|ref|XP_002282529.1| (e_value=0.0) PREDICTED: receptor protein kinase-like protein At4g34220-like [Vitis vinifera];; (*SWP) sp|C0LGS3|Y4372_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1;; (*TAIR) AT4G37250.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr4:17527789-17530191 REVERSE LENGTH=768;; (*ITAG) Solyc01g107650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86888396-86891687 transcript_region:SL2.40ch01:86888396..86891687+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00026913g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.88|1|1|1|9|299|1072; (*GB) gi|225462062|ref|XP_002269575.1| (e_value=0.0) PREDICTED: enhancer of mRNA-decapping protein 4-like [Vitis vinifera];; (*SWP) sp|Q6P2E9|EDC4_HUMAN (e_value=8e-17) Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1;; (*TAIR) AT3G13300.2 (e_value=0.0) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309;; (*ITAG) Solyc10g005920.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00023912g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.2|1|1|1|5|0|410; (*GB) gi|350538583|ref|NP_001234606.1| (e_value=0.0) amino acid transporter [Solanum lycopersicum];; (*SWP) sp|Q39134|AAP3_ARATH (e_value=0.0) Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2;; (*TAIR) AT1G77380.1 (e_value=0.0) | Symbols: AAP3, ATAAP3 | amino acid permease 3 | chr1:29075201-29077252 REVERSE LENGTH=476;; (*ITAG) Solyc06g060110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34421106-34423721 transcript_region:SL2.40ch06:34421106..34423721- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease (AHRD V1 **** B9GU10_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00023912g0001.1 protein AED:0.14 eAED:0.14 QI:227|0.72|0.58|1|1|1|12|0|896; (*GB) gi|356518555|ref|XP_003527944.1| (e_value=0.0) PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max];; (*SWP) sp|Q9XI07|SWI3C_ARATH (e_value=7e-154) SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1;; (*TAIR) AT1G21700.1 (e_value=5e-155) | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807;; (*ITAG) Solyc06g060120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34441472-34459907 transcript_region:SL2.40ch06:34441472..34459907- go_terms:GO:0005515 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_MOUSE); contains Interpro domain(s) IPR007526 SWIRM "; GO:0005515 NbS00025008g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|269; (*GB) gi|224116378|ref|XP_002331967.1| (e_value=1e-48) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|O49515|ERF91_ARATH (e_value=3e-23) Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1;; (*TAIR) AT4G18450.1 (e_value=2e-24) | Symbols: | Integrase-type DNA-binding superfamily protein | chr4:10190250-10191161 REVERSE LENGTH=303;; (*ITAG) Solyc02g077360.1.1 (e_value=1e-81) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:36895267-36896043 transcript_region:SL2.40ch02:36895267..36896043+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00025008g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.83|1|0.6|0.83|6|33|162; (*GB) gi|224116372|ref|XP_002331966.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41253|RAC13_GOSHI (e_value=2e-86) Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1;; (*TAIR) AT5G45970.1 (e_value=3e-85) | Symbols: ARAC2, RAC2, ROP7, ATRAC2, ATROP7 | RAC-like 2 | chr5:18643761-18645758 FORWARD LENGTH=201;; (*ITAG) Solyc02g077400.2.1 (e_value=2e-93) genomic_reference:SL2.40ch02 gene_region:36927453-36929460 transcript_region:SL2.40ch02:36927453..36929460- go_terms:GO:0003924 functional_description:"Rac-like GTP binding protein (AHRD V1 **-- Q9S821_PHYPA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00025008g0013.1 protein AED:0.02 eAED:0.14 QI:59|0|0|1|1|1|2|0|375; (*GB) gi|224122034|ref|XP_002330714.1| (e_value=4e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSM9|LBD7_ARATH (e_value=3e-14) LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1;; (*TAIR) AT1G72980.1 (e_value=2e-15) | Symbols: LBD7 | LOB domain-containing protein 7 | chr1:27456227-27456871 REVERSE LENGTH=214;; (*ITAG) Solyc02g077380.1.1 (e_value=1e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36904300-36906665 transcript_region:SL2.40ch02:36904300..36906665- functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00025008g0007.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|150; (*GB) gi|350539681|ref|NP_001233987.1| (e_value=3e-79) pathogenesis-related genes transcriptional activator PTI5 [Solanum lycopersicum];; (*SWP) sp|O04681|PTI5_SOLLC (e_value=1e-80) Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1;; (*TAIR) AT3G23240.1 (e_value=6e-39) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc02g077370.1.1 (e_value=6e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36901000-36901485 transcript_region:SL2.40ch02:36901000..36901485- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 2 (AHRD V1 ***- B6SSU7_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00000063g0012.1 protein AED:0.33 eAED:0.33 QI:28|0.66|0.42|0.85|0.66|0.57|7|0|396; (*GB) gi|359479237|ref|XP_002265745.2| (e_value=1e-86) PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera];; (*TAIR) AT3G22190.2 (e_value=4e-52) | Symbols: IQD5 | IQ-domain 5 | chr3:7831280-7833512 REVERSE LENGTH=422;; (*ITAG) Solyc11g071840.1.1 (e_value=1e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52274253-52280254 transcript_region:SL2.40ch11:52274253..52280254+ functional_description:"Calmodulin binding protein (AHRD V1 **-- B6TPD8_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; NbS00056293g0004.1 protein AED:0.12 eAED:0.12 QI:176|1|1|1|0.8|0.66|6|425|368; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=5e-96) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*TAIR) AT2G33620.4 (e_value=7e-63) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc08g077030.2.1 (e_value=1e-100) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00002997g0019.1 protein AED:0.18 eAED:0.18 QI:380|1|1|1|1|1|4|349|210; (*GB) gi|255584612|ref|XP_002533030.1| (e_value=3e-113) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G34690.1 (e_value=2e-104) | Symbols: ACD11 | Glycolipid transfer protein (GLTP) family protein | chr2:14630425-14631779 FORWARD LENGTH=206;; (*ITAG) Solyc02g070250.2.1 (e_value=1e-143) genomic_reference:SL2.40ch02 gene_region:34583999-34589182 transcript_region:SL2.40ch02:34583999..34589182- go_terms:GO:0005515,GO:0010175 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-- GLTD1_DANRE); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0005515,GO:0010175 NbS00002997g0025.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|1|0.8|0.66|6|0|652; (*GB) gi|225444019|ref|XP_002281594.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Vitis vinifera];; (*SWP) sp|A9LNK9|CPSF_ARATH (e_value=5e-163) Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1;; (*TAIR) AT1G30460.1 (e_value=3e-164) | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation specificity factor 30 | chr1:10771469-10775323 REVERSE LENGTH=631;; (*ITAG) Solyc02g021760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:14319129-14335346 transcript_region:SL2.40ch02:14319129..14335346- go_terms:GO:0005516,GO:0003723 functional_description:"mRNA 3&apos-end-processing protein yth1 (AHRD V1 *--- B2WC08_PYRTR); contains Interpro domain(s) IPR007275 YT521-B-like protein "; GO:0005516,GO:0003723 NbS00002997g0026.1 protein AED:0.25 eAED:0.31 QI:112|0.6|0.33|0.83|0.4|0.5|6|0|223; (*GB) gi|255564297|ref|XP_002523145.1| (e_value=5e-37) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT1G30680.1 (e_value=1e-15) | Symbols: | toprim domain-containing protein | chr1:10881665-10886060 FORWARD LENGTH=709;; (*ITAG) Solyc02g070230.1.1 (e_value=8e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34563780-34566850 transcript_region:SL2.40ch02:34563780..34566850- functional_description:"Toprim domain-containing protein (ISS) (AHRD V1 ***- Q016M7_OSTTA)"; NbS00002997g0029.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.83|1|0.72|0.78|37|276|1709; (*GB) gi|359483669|ref|XP_002274947.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253161 [Vitis vinifera];; (*TAIR) AT2G34680.1 (e_value=0.0) | Symbols: AIR9 | Outer arm dynein light chain 1 protein | chr2:14616947-14628300 REVERSE LENGTH=1708;; (*ITAG) Solyc02g070260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34600500-34626149 transcript_region:SL2.40ch02:34600500..34626149+ go_terms:GO:0005515 functional_description:"Protein phosphatase 1 regulatory subunit 7 (AHRD V1 *--- C0S143_PARBP); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00002997g0022.1 protein AED:0.22 eAED:0.24 QI:0|0|0|1|0.8|0.83|6|0|365; (*GB) gi|297740809|emb|CBI30991.3| (e_value=6e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=2e-66) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=1e-67) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc02g070270.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34628194-34630077 transcript_region:SL2.40ch02:34628194..34630077+ go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_HUMAN); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00060693g0006.1 protein AED:0.25 eAED:0.25 QI:19|1|0.8|1|1|1|5|275|199; (*GB) gi|224063359|ref|XP_002301111.1| (e_value=5e-108) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3UDK1|TRAD1_MOUSE (e_value=8e-22) TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1;; (*TAIR) AT1G09920.1 (e_value=3e-86) | Symbols: | TRAF-type zinc finger-related | chr1:3224863-3226860 REVERSE LENGTH=192;; (*ITAG) Solyc12g088070.1.1 (e_value=4e-129) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61996750-62000973 transcript_region:SL2.40ch12:61996750..62000973- functional_description:"TRAF type zinc finger domain containing 1 (AHRD V1 **-- B6T8M5_MAIZE)"; NbS00060693g0005.1 protein AED:0.39 eAED:0.40 QI:0|1|0.66|1|1|1|3|0|106; (*GB) gi|225459042|ref|XP_002285630.1| (e_value=6e-68) PREDICTED: transcription initiation factor IIA subunit 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q39236|T2AG_ARATH (e_value=3e-68) Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2;; (*TAIR) AT4G24440.2 (e_value=2e-69) | Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106;; (*ITAG) Solyc12g088030.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:61971197-61976224 transcript_region:SL2.40ch12:61971197..61976224- go_terms:GO:0005672 functional_description:"Transcription initiation factor IIA subunit 2 (AHRD V1 ***- B5X5Y3_SALSA); contains Interpro domain(s) IPR003194 Transcription initiation factor IIA, gamma subunit "; GO:0005672 NbS00045496g0007.1 protein AED:0.10 eAED:0.10 QI:0|1|0|1|1|1|2|0|291; (*GB) gi|224122932|ref|XP_002318952.1| (e_value=5e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G74875.1 (e_value=3e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G67623.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28128470-28129745 REVERSE LENGTH=243;; (*ITAG) Solyc03g121160.1.1 (e_value=3e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63405449-63406450 transcript_region:SL2.40ch03:63405449..63406450- functional_description:"F-box protein At2g35280 (AHRD V1 *-*- FB127_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00045496g0006.1 protein AED:0.27 eAED:0.27 QI:249|1|1|1|1|1|7|452|313; (*GB) gi|15225064|ref|NP_181461.1| (e_value=2e-84) phosphatidylglycerolphosphate synthase 1 [Arabidopsis thaliana];; (*SWP) sp|A1JLU9|PGSA_YERE8 (e_value=2e-27) CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=pgsA PE=3 SV=1;; (*TAIR) AT2G39290.1 (e_value=5e-87) | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate synthase 1 | chr2:16407274-16408840 FORWARD LENGTH=296;; (*ITAG) Solyc04g049550.2.1 (e_value=9e-130) genomic_reference:SL2.40ch04 gene_region:41657945-41671566 transcript_region:SL2.40ch04:41657945..41671566- go_terms:GO:0008444 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-** PGSA_YERE8); contains Interpro domain(s) IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase "; GO:0008444 NbS00015896g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|297734074|emb|CBI15321.3| (e_value=1e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|B3H4F1|SP1L1_ARATH (e_value=2e-31) Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1;; (*TAIR) AT1G26355.1 (e_value=2e-32) | Symbols: SP1L1 | SPIRAL1-like1 | chr1:9117950-9118611 REVERSE LENGTH=113;; (*ITAG) Solyc03g114970.2.1 (e_value=6e-53) genomic_reference:SL2.40ch03 gene_region:58886330-58887604 transcript_region:SL2.40ch03:58886330..58887604- functional_description:"Nitrilase associated protein-like (Fragment) (AHRD V1 *--- Q1HEA6_MUSAC)"; NbS00038577g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|633; (*GB) gi|359479210|ref|XP_002272233.2| (e_value=0.0) PREDICTED: cation/calcium exchanger 3-like [Vitis vinifera];; (*SWP) sp|Q9FKP1|CCX1_ARATH (e_value=3e-143) Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1;; (*TAIR) AT5G17860.1 (e_value=3e-144) | Symbols: CAX7 | calcium exchanger 7 | chr5:5902638-5904350 REVERSE LENGTH=570;; (*ITAG) Solyc07g006370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1194436-1196139 transcript_region:SL2.40ch07:1194436..1196139- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00011297g0013.1 protein AED:0.06 eAED:0.06 QI:180|0.75|0.4|1|0.75|0.6|5|15|268; (*GB) gi|224133040|ref|XP_002321467.1| (e_value=3e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60880.1 (e_value=1e-23) | Symbols: BASL | breaking of asymmetry in the stomatal lineage | chr5:24488553-24489703 REVERSE LENGTH=262;; (*ITAG) Solyc03g114770.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:58715783-58717263 transcript_region:SL2.40ch03:58715783..58717263- functional_description:"Unknown Protein (AHRD V1)"; NbS00011297g0014.1 protein AED:0.14 eAED:0.18 QI:160|0.75|0.6|1|0.5|0.2|5|0|240; (*ITAG) Solyc03g114750.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:58707077-58708156 transcript_region:SL2.40ch03:58707077..58708156- functional_description:"Unknown Protein (AHRD V1)"; NbS00011297g0008.1 protein AED:0.22 eAED:0.22 QI:0|1|1|1|1|0.75|4|0|287; (*GB) gi|83265567|gb|ABB97536.1| (e_value=0.0) microtubule-associated protein [Nicotiana benthamiana];; (*TAIR) AT5G08120.1 (e_value=1e-58) | Symbols: MPB2C | movement protein binding protein 2C | chr5:2600743-2602678 REVERSE LENGTH=326;; (*ITAG) Solyc03g114760.2.1 (e_value=8e-166) genomic_reference:SL2.40ch03 gene_region:58711188-58715633 transcript_region:SL2.40ch03:58711188..58715633+ go_terms:GO:0005515 functional_description:"TMV-MP30 binding protein 2C (AHRD V1 **-* Q8S556_TOBAC)"; GO:0005515 NbS00011297g0012.1 protein AED:0.29 eAED:0.43 QI:0|0|0|0.8|0.25|0.2|5|0|258; (*ITAG) Solyc03g044690.1.1 (e_value=3e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14328670-14329779 transcript_region:SL2.40ch03:14328670..14329779+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 **-- FRS5_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00009224g0003.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|347; (*GB) gi|224126893|ref|XP_002329499.1| (e_value=5e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5Q0H2|FLA19_ARATH (e_value=6e-19) Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana GN=FLA19 PE=2 SV=2;; (*TAIR) AT1G15190.1 (e_value=5e-20) | Symbols: | Fasciclin-like arabinogalactan family protein | chr1:5227275-5228021 FORWARD LENGTH=248;; (*ITAG) Solyc11g005490.1.1 (e_value=2e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:383445-384278 transcript_region:SL2.40ch11:383445..384278+ functional_description:"Fasciclin-like arabinogalactan protein 18 (AHRD V1 *-*- A9XTM3_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00009224g0002.1 protein AED:0.17 eAED:0.17 QI:258|0.85|0.87|1|0.42|0.62|8|459|236; (*GB) gi|224056082|ref|XP_002298725.1| (e_value=3e-136) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9BRX9|WDR83_HUMAN (e_value=2e-72) WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1;; (*TAIR) AT5G64730.1 (e_value=3e-135) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:25873146-25875021 FORWARD LENGTH=299;; (*ITAG) Solyc11g005550.1.1 (e_value=1e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:403708-409767 transcript_region:SL2.40ch11:403708..409767+ functional_description:"WD-repeat protein (AHRD V1 **-- C4PK49_CARPA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00050322g0003.1 protein AED:0.36 eAED:0.36 QI:0|0.75|0.6|1|1|0.8|5|0|259; (*GB) gi|359497274|ref|XP_003635469.1| (e_value=3e-122) PREDICTED: porphobilinogen deaminase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q43316|HEM3_ARATH (e_value=3e-95) Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1;; (*TAIR) AT5G08280.1 (e_value=3e-96) | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382;; (*ITAG) Solyc07g066470.2.1 (e_value=3e-112) genomic_reference:SL2.40ch07 gene_region:65112777-65116118 transcript_region:SL2.40ch07:65112777..65116118- go_terms:GO:0004418 functional_description:"Porphobilinogen deaminase (AHRD V1 ***- B6TVP0_MAIZE); contains Interpro domain(s) IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase "; GO:0004418 NbS00005594g0009.1 protein AED:0.39 eAED:0.46 QI:53|0.5|0|1|0|0.66|3|0|76; (*TAIR) AT4G36860.1 (e_value=1e-13) | Symbols: | LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553;; (*ITAG) Solyc01g105180.2.1 (e_value=4e-28) genomic_reference:SL2.40ch01 gene_region:85211483-85216375 transcript_region:SL2.40ch01:85211483..85216375+ go_terms:GO:0043130 functional_description:"LIM zinc-binding protein (AHRD V1 *--* D6TLS9_9CHLR)"; GO:0043130 NbS00005594g0008.1 protein AED:0.55 eAED:0.61 QI:0|0|0.25|0.75|0.66|0.75|4|0|147; (*ITAG) Solyc03g098250.2.1 (e_value=6e-23) genomic_reference:SL2.40ch03 gene_region:54048982-54054503 transcript_region:SL2.40ch03:54048982..54054503+ go_terms:GO:0003887 functional_description:"DNA polymerase epsilon subunit 2 (AHRD V1 **** B6SKK3_MAIZE); contains Interpro domain(s) IPR016266 DNA polymerase epsilon, subunit B "; GO:0003887 NbS00005594g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.33|0.28|1|0.16|0.28|7|0|527; (*GB) gi|224090738|ref|XP_002309069.1| (e_value=0.0) laccase 110c [Populus trichocarpa];; (*SWP) sp|Q9FJD5|LAC17_ARATH (e_value=0.0) Laccase-17 OS=Arabidopsis thaliana GN=LAC17 PE=2 SV=1;; (*TAIR) AT5G60020.1 (e_value=0.0) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577;; (*ITAG) Solyc09g011970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5244850-5248906 transcript_region:SL2.40ch09:5244850..5248906+ go_terms:GO:0048046,GO:0055114 functional_description:"Laccase (AHRD V1 ***- O24044_LIRTU); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00053263g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.57|0.85|0.66|0.85|7|0|331; (*GB) gi|224088940|ref|XP_002308583.1| (e_value=1e-121) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25960.1 (e_value=2e-83) | Symbols: | Protein of Unknown Function (DUF239) | chr5:9062917-9065011 REVERSE LENGTH=352;; (*ITAG) Solyc11g070080.1.1 (e_value=2e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51705149-51709267 transcript_region:SL2.40ch11:51705149..51709267+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00000916g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.6|0.33|1|0.4|0.66|6|0|199; (*GB) gi|225461726|ref|XP_002285515.1| (e_value=6e-110) PREDICTED: uncharacterized protein LOC100245328 [Vitis vinifera];; (*TAIR) AT3G14860.2 (e_value=3e-102) | Symbols: | NHL domain-containing protein | chr3:4998591-5000894 REVERSE LENGTH=493;; (*ITAG) Solyc07g062300.2.1 (e_value=1e-129) genomic_reference:SL2.40ch07 gene_region:62286368-62290258 transcript_region:SL2.40ch07:62286368..62290258- functional_description:"NHL repeat-containing protein (AHRD V1 ***- D7L380_ARALY); contains Interpro domain(s) IPR001258 NHL repeat "; NbS00035417g0011.1 protein AED:0.07 eAED:0.07 QI:151|0.87|0.88|1|0.75|0.66|9|366|318; (*GB) gi|297733736|emb|CBI14983.3| (e_value=2e-110) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G48210.1 (e_value=4e-71) | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 194 Blast hits to 194 proteins in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72; Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr3:17849435-17851396 FORWARD LENGTH=315;; (*ITAG) Solyc03g112550.2.1 (e_value=5e-174) genomic_reference:SL2.40ch03 gene_region:56990205-56996271 transcript_region:SL2.40ch03:56990205..56996271- functional_description:"Kinetochore protein Spc25 (AHRD V1 *-*- Q54Q96_DICDI); contains Interpro domain(s) IPR013255 Kinetochore-Ndc80 complex, subunit Spc25 "; NbS00035417g0001.1 protein AED:0.08 eAED:0.08 QI:355|1|0.75|1|0|0|4|718|511; (*GB) gi|359487106|ref|XP_002274114.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M8M3|PP136_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1;; (*TAIR) AT1G80550.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:30285358-30286704 REVERSE LENGTH=448;; (*ITAG) Solyc03g112560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57000247-57002379 transcript_region:SL2.40ch03:57000247..57002379+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00035417g0013.1 protein AED:0.27 eAED:0.28 QI:0|0.71|0.5|1|0.57|0.62|8|0|332; (*GB) gi|225456946|ref|XP_002281557.1| (e_value=8e-170) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Vitis vinifera];; (*SWP) sp|A2RVM0|TIC32_ARATH (e_value=3e-71) Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1;; (*TAIR) AT5G50130.1 (e_value=8e-146) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20390066-20393053 FORWARD LENGTH=339;; (*ITAG) Solyc03g112540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56984597-56988917 transcript_region:SL2.40ch03:56984597..56988917+ go_terms:GO:0004745,GO:0046983 functional_description:"Retinol dehydrogenase 12 (AHRD V1 **-* B6UB33_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745,GO:0046983 NbS00004100g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.6|1|0.75|1|5|0|316; (*GB) gi|27529856|dbj|BAC53943.1| (e_value=2e-99) DnaJ homolog [Nicotiana tabacum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=2e-92) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=3e-88) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=4e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00015431g0019.1 protein AED:0.03 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|173; (*GB) gi|224105511|ref|XP_002313837.1| (e_value=5e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15780.1 (e_value=5e-51) | Symbols: | Cupredoxin superfamily protein | chr2:6873666-6874701 REVERSE LENGTH=257;; (*ITAG) Solyc01g108350.2.1 (e_value=7e-109) genomic_reference:SL2.40ch01 gene_region:87454424-87455286 transcript_region:SL2.40ch01:87454424..87455286+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00015431g0022.1 protein AED:0.12 eAED:0.13 QI:0|0|0.33|1|0.5|0.66|3|1821|510; (*GB) gi|359475386|ref|XP_003631674.1| (e_value=1e-138) PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Vitis vinifera];; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=2e-123) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=1e-124) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc01g108410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00015431g0026.1 protein AED:0.16 eAED:0.16 QI:322|0.5|0.33|0.66|0|0.66|3|0|117; (*GB) gi|357447841|ref|XP_003594196.1| (e_value=3e-24) hypothetical protein MTR_2g025490 [Medicago truncatula];; (*TAIR) AT4G22320.1 (e_value=1e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc04g014710.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:4972023-4976850 transcript_region:SL2.40ch04:4972023..4976850- functional_description:"cDNA clone 002-156-B04 full insert sequence (AHRD V1 *-*- B7F1Y4_ORYSJ)"; NbS00015431g0025.1 protein AED:0.23 eAED:0.23 QI:245|1|1|1|0.9|0.90|11|660|590; (*GB) gi|224096786|ref|XP_002310736.1| (e_value=0.0) CPK related protein kinase 7 [Populus trichocarpa];; (*SWP) sp|P53681|CRK_DAUCA (e_value=0.0) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT3G50530.1 (e_value=0.0) | Symbols: CRK | CDPK-related kinase | chr3:18753833-18756487 FORWARD LENGTH=601;; (*ITAG) Solyc01g108400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87497215-87503003 transcript_region:SL2.40ch01:87497215..87503003+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 **** Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00015431g0023.1 protein AED:0.00 eAED:0.00 QI:225|1|1|1|1|1|2|308|72; (*TAIR) AT5G43580.1 (e_value=1e-14) | Symbols: | Serine protease inhibitor, potato inhibitor I-type family protein | chr5:17508098-17508668 REVERSE LENGTH=99;; (*ITAG) Solyc01g108390.2.1 (e_value=2e-36) genomic_reference:SL2.40ch01 gene_region:87466418-87466957 transcript_region:SL2.40ch01:87466418..87466957- go_terms:GO:0009611 functional_description:"Proteinase inhibitor (AHRD V1 ***- D6BR63_9ROSI); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00015431g0006.1 protein AED:0.23 eAED:0.31 QI:53|0|0.5|1|0|0.5|2|439|107; (*GB) gi|225459577|ref|XP_002285862.1| (e_value=2e-36) PREDICTED: acetyltransferase At1g77540 [Vitis vinifera];; (*SWP) sp|Q9CAQ2|Y1754_ARATH (e_value=1e-25) Acetyltransferase At1g77540 OS=Arabidopsis thaliana GN=At1g77540 PE=1 SV=2;; (*TAIR) AT1G21770.1 (e_value=4e-33) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:7651843-7652249 REVERSE LENGTH=111;; (*ITAG) Solyc08g067800.1.1 (e_value=9e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:54054786-54055097 transcript_region:SL2.40ch08:54054786..54055097- go_terms:GO:0004402 functional_description:"Acetyltransferase (AHRD V1 **-* B4RG69_PHEZH); contains Interpro domain(s) IPR016181 Acyl-CoA N-acyltransferase "; GO:0004402 NbS00015431g0005.1 protein AED:0.33 eAED:0.62 QI:0|1|0.5|1|0|0|2|652|484; (*GB) gi|224123456|ref|XP_002330319.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19120.1 (e_value=0.0) | Symbols: | PIF / Ping-Pong family of plant transposases | chr3:6609678-6611018 REVERSE LENGTH=446;; (*ITAG) Solyc07g040960.1.1 (e_value=4e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00011504g0008.1 protein AED:0.66 eAED:0.75 QI:0|0|0|0.66|0.5|0.66|3|0|270; (*ITAG) Solyc06g035800.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00011504g0001.1 protein AED:0.14 eAED:0.14 QI:97|1|0.66|1|0.5|0.33|3|1192|75; (*GB) gi|357492929|ref|XP_003616753.1| (e_value=3e-36) Cysteine-rich receptor-like protein kinase [Medicago truncatula];; (*SWP) sp|Q9FXF2|RKF1_ARATH (e_value=3e-36) Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1;; (*TAIR) AT1G29750.1 (e_value=2e-37) | Symbols: RKF1 | receptor-like kinase in flowers 1 | chr1:10414071-10419813 REVERSE LENGTH=1006;; (*ITAG) Solyc02g071880.2.1 (e_value=6e-41) genomic_reference:SL2.40ch02 gene_region:35821174-35834341 transcript_region:SL2.40ch02:35821174..35834341- go_terms:GO:0004702,GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0004702,GO:0005515 NbS00011504g0007.1 protein AED:0.48 eAED:0.48 QI:0|0|0|1|0|0|2|0|146; (*ITAG) Solyc01g017760.1.1 (e_value=5e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024714g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|309; (*GB) gi|297831494|ref|XP_002883629.1| (e_value=1e-125) hypothetical protein ARALYDRAFT_480071 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G04220.1 (e_value=5e-126) | Symbols: | Plant protein of unknown function (DUF868) | chr2:1445401-1446324 FORWARD LENGTH=307;; (*ITAG) Solyc12g044670.1.1 (e_value=2e-180) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45286157-45287083 transcript_region:SL2.40ch12:45286157..45287083- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS21_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00024714g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0|1|1|1|3|0|1256; (*GB) gi|225460781|ref|XP_002276411.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246876 [Vitis vinifera];; (*SWP) sp|Q7RTR2|NLRC3_HUMAN (e_value=5e-16) Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2;; (*TAIR) AT5G55540.1 (e_value=0.0) | Symbols: TRN1, LOP1 | tornado 1 | chr5:22496322-22500543 REVERSE LENGTH=1380;; (*ITAG) Solyc03g112750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57140851-57146237 transcript_region:SL2.40ch03:57140851..57146237+ functional_description:"Leucine rich repeat containing proteins-like protein (AHRD V1 *--- B3G460_ADIVA); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; NbS00024714g0015.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|0|0.5|2|0|92 NbS00024714g0014.1 protein AED:0.94 eAED:0.94 QI:0|0|0|0.2|0.75|0.6|5|0|193 NbS00043660g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|104 NbS00043660g0008.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|99|94 NbS00043660g0010.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|527; (*GB) gi|255090918|gb|ACU00619.1| (e_value=0.0) penetration and arbuscule morphogenesis protein [Petunia x hybrida];; (*SWP) sp|Q4UMH6|Y381_RICFE (e_value=1e-35) Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1;; (*TAIR) AT5G13530.1 (e_value=2e-20) | Symbols: KEG | protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1625;; (*ITAG) Solyc10g081500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61878337-61880805 transcript_region:SL2.40ch10:61878337..61880805+ go_terms:GO:0005198 functional_description:"Ankyrin repeat protein (AHRD V1 ***- A1DAS1_NEOFI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005198 NbS00011542g0005.1 protein AED:0.18 eAED:0.18 QI:146|0.75|0.77|0.88|0.75|0.88|9|517|383; (*GB) gi|147773895|emb|CAN69547.1| (e_value=2e-120) hypothetical protein VITISV_005614 [Vitis vinifera];; (*SWP) sp|Q2KII6|NGDN_BOVIN (e_value=3e-29) Neuroguidin OS=Bos taurus GN=NGDN PE=2 SV=1;; (*TAIR) AT1G07840.1 (e_value=8e-85) | Symbols: | Sas10/Utp3/C1D family | chr1:2424603-2426425 FORWARD LENGTH=312;; (*ITAG) Solyc04g076560.2.1 (e_value=2e-147) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00011542g0006.1 protein AED:0.34 eAED:0.34 QI:0|0.54|0.41|1|0.54|0.5|12|0|489; (*GB) gi|255572868|ref|XP_002527366.1| (e_value=5e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24460.2 (e_value=2e-91) | Symbols: CLT2 | CRT (chloroquine-resistance transporter)-like transporter 2 | chr4:12642888-12645310 FORWARD LENGTH=431;; (*ITAG) Solyc04g076570.2.1 (e_value=3e-159) genomic_reference:SL2.40ch04 gene_region:59067558-59075096 transcript_region:SL2.40ch04:59067558..59075096- functional_description:"Crt homolog 3 (AHRD V1 ***- CRTP3_DICDI)"; NbS00035212g0002.1 protein AED:0.35 eAED:0.35 QI:308|0.72|0.75|0.83|0.90|0.83|12|0|348; (*GB) gi|1389654|dbj|BAA12918.1| (e_value=1e-167) cytosolic ascorbate peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9FE01|APX2_ORYSJ (e_value=3e-144) L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1;; (*TAIR) AT1G07890.6 (e_value=2e-144) | Symbols: APX1, MEE6, CS1, ATAPX1, ATAPX01 | ascorbate peroxidase 1 | chr1:2438005-2439349 FORWARD LENGTH=249;; (*ITAG) Solyc06g005150.2.1 (e_value=2e-160) genomic_reference:SL2.40ch06 gene_region:170218-173338 transcript_region:SL2.40ch06:170218..173338- go_terms:GO:0055114 functional_description:"Ascorbate peroxidase (AHRD V1 ***- Q52QQ4_SOLLC); contains Interpro domain(s) IPR019793 Peroxidases heam-ligand binding site IPR019794 Peroxidase, active site IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00005025g0004.1 protein AED:0.14 eAED:0.14 QI:214|0.83|1|1|1|1|7|214|347; (*GB) gi|350537637|ref|NP_001233791.1| (e_value=0.0) omega-3 fatty acid desaturase [Solanum lycopersicum];; (*SWP) sp|P48626|FAD3E_TOBAC (e_value=0.0) Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1;; (*TAIR) AT5G05580.1 (e_value=1e-171) | Symbols: FAD8 | fatty acid desaturase 8 | chr5:1664331-1666345 FORWARD LENGTH=435;; (*ITAG) Solyc06g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1182184-1184241 transcript_region:SL2.40ch06:1182184..1184241- go_terms:GO:0042389 functional_description:"Omega-3 fatty acid desaturase (AHRD V1 **** A9LNM9_SOLLC); contains Interpro domain(s) IPR005804 Fatty acid desaturase, type 1 "; GO:0042389 NbS00039555g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|315; (*GB) gi|255584594|ref|XP_002533021.1| (e_value=5e-97) Transcription factor RF2a, putative [Ricinus communis];; (*SWP) sp|Q8W3M7|Y4598_ARATH (e_value=1e-20) Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2;; (*TAIR) AT1G58110.2 (e_value=3e-66) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:21515919-21517374 REVERSE LENGTH=374;; (*ITAG) Solyc10g044830.1.1 (e_value=7e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:23714710-23717497 transcript_region:SL2.40ch10:23714710..23717497+ functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q2R8T2_ORYSJ)"; NbS00006416g0025.1 protein AED:0.18 eAED:0.18 QI:233|0.86|0.90|0.96|0.93|0.93|31|0|1066; (*GB) gi|225439303|ref|XP_002267555.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like [Vitis vinifera];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=0.0) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.1 (e_value=0.0) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2019545-2027834 REVERSE LENGTH=1116;; (*ITAG) Solyc10g081610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00006416g0007.1 protein AED:0.00 eAED:0.00 QI:67|1|1|1|0.75|0.6|5|528|241; (*GB) gi|359481089|ref|XP_002265324.2| (e_value=2e-112) PREDICTED: N(6)-adenine-specific DNA methyltransferase 2-like [Vitis vinifera];; (*SWP) sp|Q8WVE0|N6MT2_HUMAN (e_value=1e-60) N(6)-adenine-specific DNA methyltransferase 2 OS=Homo sapiens GN=N6AMT2 PE=1 SV=1;; (*TAIR) AT3G58470.1 (e_value=5e-105) | Symbols: | nucleic acid binding;methyltransferases | chr3:21627070-21628507 REVERSE LENGTH=248;; (*ITAG) Solyc10g081590.1.1 (e_value=1e-142) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:61948462-61951703 transcript_region:SL2.40ch10:61948462..61951703+ go_terms:GO:0032259 functional_description:"N6-adenine-specific DNA methyltransferase 2 (AHRD V1 ***- C1C3V5_RANCA); contains Interpro domain(s) IPR019369 N-6 adenine-specific DNA methylase-related, eukaryotic "; GO:0032259 NbS00006416g0001.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.66|1|0|0.66|3|647|443; (*GB) gi|225439323|ref|XP_002269129.1| (e_value=0.0) PREDICTED: F-box protein At5g06550 [Vitis vinifera];; (*SWP) sp|Q67XX3|FB252_ARATH (e_value=0.0) F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1;; (*TAIR) AT5G06550.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:2001246-2003068 REVERSE LENGTH=502;; (*ITAG) Solyc10g081630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61997268-61999828 transcript_region:SL2.40ch10:61997268..61999828+ functional_description:"JmjC domain containing protein (AHRD V1 **-- C5PBB2_COCP7); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; NbS00006416g0027.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|0.25|0.6|5|144|599; (*GB) gi|224138222|ref|XP_002322760.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06560.1 (e_value=4e-167) | Symbols: | Protein of unknown function, DUF593 | chr5:2003678-2005543 REVERSE LENGTH=518;; (*ITAG) Solyc10g081620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61992772-61996010 transcript_region:SL2.40ch10:61992772..61996010+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00006416g0023.1 protein AED:0.25 eAED:0.25 QI:0|1|0.91|1|0.72|0.75|12|335|391; (*GB) gi|359481109|ref|XP_002267146.2| (e_value=0.0) PREDICTED: uncharacterized protein At3g58460-like [Vitis vinifera];; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=3e-163) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2;; (*TAIR) AT3G58460.2 (e_value=3e-164) | Symbols: RBL15 | RHOMBOID-like protein 15 | chr3:21623374-21626642 REVERSE LENGTH=426;; (*ITAG) Solyc10g081600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61954776-61960495 transcript_region:SL2.40ch10:61954776..61960495+ go_terms:GO:0016021 functional_description:"Rhomboid protease GlpG (AHRD V1 *-*- C5B969_EDWI9); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00019649g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|224114898|ref|XP_002332257.1| (e_value=7e-24) predicted protein [Populus trichocarpa]; NbS00019649g0007.1 protein AED:0.12 eAED:0.13 QI:33|0.75|0.8|1|0.75|0.8|5|965|659; (*GB) gi|224127911|ref|XP_002320194.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G61680.1 (e_value=2e-152) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:22824630-22826926 FORWARD LENGTH=649;; (*ITAG) Solyc01g095720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78675422-78678688 transcript_region:SL2.40ch01:78675422..78678688+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- C1FIH0_9CHLO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00051374g0003.1 protein AED:0.09 eAED:0.09 QI:1046|1|1|1|1|1|2|265|274; (*GB) gi|32470632|gb|AAP45159.1| (e_value=6e-172) Plant viral-response family protein [Solanum bulbocastanum];; (*SWP) sp|Q3T130|TM45B_BOVIN (e_value=1e-13) Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1;; (*TAIR) AT1G32120.1 (e_value=4e-132) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc08g075970.2.1 (e_value=1e-173) genomic_reference:SL2.40ch08 gene_region:57214926-57218339 transcript_region:SL2.40ch08:57214926..57218339- functional_description:"Transmembrane protein 45B (AHRD V1 **-- C3KGS0_ANOFI); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00022615g0014.1 protein AED:0.15 eAED:0.15 QI:115|1|1|1|0.57|0.5|8|246|606; (*GB) gi|218198582|gb|EEC81009.1| (e_value=1e-172) hypothetical protein OsI_23771 [Oryza sativa Indica Group];; (*SWP) sp|Q8VXB5|HAK8_ORYSJ (e_value=2e-163) Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=2 SV=2;; (*TAIR) AT2G40540.2 (e_value=4e-122) | Symbols: KT2, ATKT2, SHY3, KUP2, ATKUP2, TRK2 | potassium transporter 2 | chr2:16931445-16934516 FORWARD LENGTH=794;; (*ITAG) Solyc03g097860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:53629613-53633565 transcript_region:SL2.40ch03:53629613..53633565+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00022615g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.8|0.66|1|1|1|6|0|292; (*GB) gi|257831431|gb|ACV71016.1| (e_value=1e-165) UPA16 [Capsicum annuum];; (*SWP) sp|Q9SMM5|SWT11_ARATH (e_value=2e-84) Bidirectional sugar transporter SWEET11 OS=Arabidopsis thaliana GN=SWEET11 PE=1 SV=1;; (*TAIR) AT3G48740.1 (e_value=2e-85) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc03g097580.2.1 (e_value=4e-170) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00022615g0007.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|99; (*ITAG) Solyc04g053070.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00022615g0013.1 protein AED:0.25 eAED:0.25 QI:0|0.83|0.57|0.85|1|1|7|0|261; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=1e-159) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=4e-161) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=6e-141) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc06g072490.2.1 (e_value=8e-161) genomic_reference:SL2.40ch06 gene_region:41099889-41102697 transcript_region:SL2.40ch06:41099889..41102697+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LACBS); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183,GO:0003735 NbS00005156g0006.1 protein AED:0.15 eAED:0.15 QI:294|0.8|0.83|1|0.6|0.83|6|473|349; (*GB) gi|359359232|gb|AEV41134.1| (e_value=1e-114) D2/4-type cyclin [Populus x canadensis];; (*SWP) sp|Q6YXH8|CCD41_ORYSJ (e_value=7e-74) Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2;; (*TAIR) AT2G22490.2 (e_value=2e-74) | Symbols: CYCD2;1 | Cyclin D2;1 | chr2:9554157-9555873 REVERSE LENGTH=362;; (*ITAG) Solyc04g076040.2.1 (e_value=8e-131) genomic_reference:SL2.40ch04 gene_region:58597640-58599964 transcript_region:SL2.40ch04:58597640..58599964- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin d2 (AHRD V1 **** Q6T2Z7_SOYBN); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0005515,GO:0016538 NbS00023775g0013.1 protein AED:0.18 eAED:0.19 QI:222|0.33|0.57|1|0.5|0.57|7|0|592; (*GB) gi|255547422|ref|XP_002514768.1| (e_value=0.0) endo-1,4-beta-glucanase, putative [Ricinus communis];; (*SWP) sp|Q7XUK4|GUN12_ORYSJ (e_value=0.0) Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2;; (*TAIR) AT1G65610.1 (e_value=0.0) | Symbols: ATGH9A2, KOR2 | Six-hairpin glycosidases superfamily protein | chr1:24391823-24395261 REVERSE LENGTH=623;; (*ITAG) Solyc11g008820.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3003590-3009749 transcript_region:SL2.40ch11:3003590..3009749- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- Q0KIX2_CUCME); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00023775g0002.1 protein AED:0.25 eAED:0.25 QI:176|0.66|0.68|0.87|0.93|0.87|16|176|589; (*GB) gi|30697215|ref|NP_176737.2| (e_value=0.0) beta-hexosaminidase 3 [Arabidopsis thaliana];; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=7e-71) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1;; (*TAIR) AT1G65590.1 (e_value=0.0) | Symbols: HEXO3, ATHEX1 | beta-hexosaminidase 3 | chr1:24385996-24390989 FORWARD LENGTH=535;; (*ITAG) Solyc11g008810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2996357-3002941 transcript_region:SL2.40ch11:2996357..3002941+ go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 "; GO:0016231 NbS00048463g0004.1 protein AED:0.07 eAED:0.07 QI:441|0.5|0.4|1|0.75|0.6|5|0|1041; (*GB) gi|224107933|ref|XP_002314659.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAA7|PUB42_ARATH (e_value=2e-30) Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1;; (*TAIR) AT1G68940.1 (e_value=1e-31) | Symbols: | Armadillo/beta-catenin-like repeat family protein | chr1:25922001-25925374 REVERSE LENGTH=1033;; (*ITAG) Solyc09g083060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64131723-64136146 transcript_region:SL2.40ch09:64131723..64136146- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbC25741673g0001.1 protein AED:0.00 eAED:0.00 QI:105|1|1|1|0|0.5|2|0|267; (*GB) gi|225446392|ref|XP_002274522.1| (e_value=1e-108) PREDICTED: O-acyltransferase WSD1 [Vitis vinifera];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=2e-14) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49190.1 (e_value=9e-20) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc12g010590.1.1 (e_value=2e-151) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3563160-3568207 transcript_region:SL2.40ch12:3563160..3568207+ go_terms:GO:0008152 functional_description:"O-acyltransferase WSD1 (AHRD V1 **-- WSD1_ARATH)"; GO:0008152 NbS00044518g0010.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.8|1|0.75|0.8|5|267|500; (*GB) gi|85068674|gb|ABC69417.1| (e_value=0.0) CYP72A54 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=0.0) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14690.1 (e_value=0.0) | Symbols: CYP72A15 | cytochrome P450, family 72, subfamily A, polypeptide 15 | chr3:4937410-4939310 FORWARD LENGTH=512;; (*ITAG) Solyc07g006140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:984510-988395 transcript_region:SL2.40ch07:984510..988395- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00044518g0011.1 protein AED:0.04 eAED:0.06 QI:0|0|0|1|0|0|4|0|397; (*GB) gi|356531058|ref|XP_003534095.1| (e_value=0.0) PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Glycine max];; (*SWP) sp|P35614|ERF1Z_ARATH (e_value=0.0) Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1;; (*TAIR) AT3G26618.1 (e_value=0.0) | Symbols: ERF1-3 | eukaryotic release factor 1-3 | chr3:9788854-9790161 FORWARD LENGTH=435;; (*ITAG) Solyc07g006130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:982252-983469 transcript_region:SL2.40ch07:982252..983469+ go_terms:GO:0016149 functional_description:"Eukaryotic peptide chain release factor subunit 1-1 (AHRD V1 **** B6U1I9_MAIZE); contains Interpro domain(s) IPR004403 Peptide chain release factor eRF/aRF subunit 1 "; GO:0016149 NbS00028039g0004.1 protein AED:0.14 eAED:0.14 QI:126|0.66|0.61|0.92|0.33|0.30|13|0|413; (*GB) gi|356540508|ref|XP_003538730.1| (e_value=5e-141) PREDICTED: sec14 cytosolic factor-like [Glycine max];; (*SWP) sp|P24859|SEC14_KLULA (e_value=3e-45) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT5G47510.1 (e_value=6e-121) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr5:19275048-19276999 FORWARD LENGTH=376;; (*ITAG) Solyc08g078680.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59625928-59629228 transcript_region:SL2.40ch08:59625928..59629228+ go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7MP40_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00000397g0012.1 protein AED:0.15 eAED:0.15 QI:122|1|1|1|1|1|3|640|244; (*GB) gi|225432014|ref|XP_002273418.1| (e_value=7e-15) PREDICTED: uncharacterized protein LOC100267130 [Vitis vinifera];; (*ITAG) Solyc05g053360.2.1 (e_value=7e-47) genomic_reference:SL2.40ch05 gene_region:62622554-62625670 transcript_region:SL2.40ch05:62622554..62625670- functional_description:"Unknown Protein (AHRD V1)"; NbS00000397g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|147859810|emb|CAN83558.1| (e_value=1e-49) hypothetical protein VITISV_010715 [Vitis vinifera];; (*ITAG) Solyc05g050640.1.1 (e_value=7e-63) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:59932705-59933262 transcript_region:SL2.40ch05:59932705..59933262- functional_description:"Unknown Protein (AHRD V1)"; NbS00000397g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0|0|3|0|427; (*GB) gi|225436668|ref|XP_002276655.1| (e_value=5e-126) PREDICTED: phenylalanine N-monooxygenase-like [Vitis vinifera];; (*SWP) sp|Q9FLC8|C79A2_ARATH (e_value=6e-119) Phenylalanine N-monooxygenase OS=Arabidopsis thaliana GN=CYP79A2 PE=1 SV=1;; (*TAIR) AT5G05260.1 (e_value=4e-120) | Symbols: CYP79A2 | cytochrome p450 79a2 | chr5:1559778-1561765 REVERSE LENGTH=523;; (*ITAG) Solyc04g005360.1.1 (e_value=5e-171) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:257826-259469 transcript_region:SL2.40ch04:257826..259469- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000397g0007.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|4|0|170; (*GB) gi|2765240|emb|CAA73333.1| (e_value=2e-44) invertase inhibitor [Nicotiana tabacum];; (*SWP) sp|F4HWQ8|CVIF1_ARATH (e_value=2e-13) Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis thaliana GN=C/VIF1 PE=1 SV=1;; (*TAIR) AT1G47960.1 (e_value=1e-14) | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar inhibitor of fructosidase 1 | chr1:17681954-17683516 REVERSE LENGTH=205;; (*ITAG) Solyc12g099200.1.1 (e_value=1e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64775547-64776957 transcript_region:SL2.40ch12:64775547..64776957+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** O49908_TOBAC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00021199g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|204; (*GB) gi|225444511|ref|XP_002274403.1| (e_value=3e-87) PREDICTED: uncharacterized protein LOC100246942 [Vitis vinifera];; (*TAIR) AT1G11700.1 (e_value=4e-54) | Symbols: | Protein of unknown function, DUF584 | chr1:3945852-3946457 FORWARD LENGTH=201;; (*ITAG) Solyc02g032800.1.1 (e_value=8e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:19965521-19966168 transcript_region:SL2.40ch02:19965521..19966168- functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *-*- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00001239g0009.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|0.66|0.5|4|222|460; (*GB) gi|225426578|ref|XP_002279898.1| (e_value=0.0) PREDICTED: putative aminoacrylate hydrolase RutD [Vitis vinifera];; (*TAIR) AT4G24140.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12530032-12533664 REVERSE LENGTH=498;; (*ITAG) Solyc08g008610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3003194-3008230 transcript_region:SL2.40ch08:3003194..3008230- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7M8X4_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00001239g0008.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.2|1|0.75|0.6|5|0|383; (*GB) gi|255555761|ref|XP_002518916.1| (e_value=3e-179) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FJ25|GDL81_ARATH (e_value=1e-163) GDSL esterase/lipase At5g41890 OS=Arabidopsis thaliana GN=At5g41890 PE=2 SV=1;; (*TAIR) AT5G41890.1 (e_value=3e-165) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:16764292-16766680 REVERSE LENGTH=375;; (*ITAG) Solyc08g008620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3012924-3017068 transcript_region:SL2.40ch08:3012924..3017068+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g41890 (AHRD V1 **** GDL81_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00024195g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|243; (*GB) gi|224109520|ref|XP_002315223.1| (e_value=6e-113) predicted protein [Populus trichocarpa];; (*TAIR) AT3G55420.1 (e_value=1e-86) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20547920-20548570 FORWARD LENGTH=216;; (*ITAG) Solyc05g054450.1.1 (e_value=6e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:63522312-63523001 transcript_region:SL2.40ch05:63522312..63523001+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047374g0009.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|281; (*GB) gi|350537355|ref|NP_001234034.1| (e_value=5e-128) IDS4-like protein [Solanum lycopersicum];; (*SWP) sp|Q8LBH4|SPX1_ARATH (e_value=1e-78) SPX domain-containing protein 1 OS=Arabidopsis thaliana GN=SPX1 PE=2 SV=2;; (*TAIR) AT5G20150.1 (e_value=8e-80) | Symbols: ATSPX1, SPX1 | SPX domain gene 1 | chr5:6802429-6803367 FORWARD LENGTH=256;; (*ITAG) Solyc08g060920.2.1 (e_value=5e-133) genomic_reference:SL2.40ch08 gene_region:42987091-42988595 transcript_region:SL2.40ch08:42987091..42988595+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00047374g0008.1 protein AED:0.17 eAED:0.17 QI:72|0.5|0.33|0.66|1|1|3|0|171; (*ITAG) Solyc03g044840.1.1 (e_value=6e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00047374g0007.1 protein AED:0.25 eAED:0.33 QI:0|0|0.5|1|1|1|2|0|305; (*GB) gi|224143132|ref|XP_002324857.1| (e_value=9e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFR7|CXE17_ARATH (e_value=2e-63) Probable carboxylesterase 17 OS=Arabidopsis thaliana GN=CXE17 PE=2 SV=1;; (*TAIR) AT5G16080.1 (e_value=1e-64) | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | chr5:5252533-5253567 REVERSE LENGTH=344;; (*ITAG) Solyc08g060930.2.1 (e_value=7e-85) genomic_reference:SL2.40ch08 gene_region:42999579-43000280 transcript_region:SL2.40ch08:42999579..43000280+ go_terms:GO:0008152 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6T2M3_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00017559g0002.1 protein AED:0.19 eAED:0.20 QI:0|0|0|0.66|0|0|3|0|231; (*GB) gi|57013886|ref|YP_173360.1| (e_value=4e-47) cytochrome c maturation protein CcmC [Nicotiana tabacum];; (*SWP) sp|P92527|CCMC_ARATH (e_value=1e-33) Putative cytochrome c biosynthesis ccmC-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMC PE=2 SV=4;; (*ITAG) ATMG00900.1 (e_value=1e-45) | Symbols: CCB256 | cytochrome C biogenesis 256 | chrM:239988-240758 REVERSE LENGTH=256;; (*ITAG) Solyc12g035840.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29006530-29008560 transcript_region:SL2.40ch12:29006530..29008560+ go_terms:GO:0005840,GO:0016020 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 *-*- D3WBC0_9BORA); contains Interpro domain(s) IPR003557 Cytochrome c-type biogenesis protein CcmC "; GO:0005840,GO:0016020 NbS00017559g0111.1 protein AED:0.00 eAED:0.00 QI:279|1|1|1|1|1|2|385|256 NbS00017559g0109.1 protein AED:0.36 eAED:0.37 QI:0|0.16|0.42|0.71|1|1|7|0|366 NbS00017559g0115.1 protein AED:0.26 eAED:0.41 QI:0|0|0|1|0|0.25|4|0|202 NbS00017559g0116.1 protein AED:0.49 eAED:0.49 QI:0|0.6|0.33|0.83|0.6|0.33|6|0|164 NbS00024871g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|224; (*ITAG) Solyc09g008750.1.1 (e_value=5e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2181098-2181706 transcript_region:SL2.40ch09:2181098..2181706- functional_description:"Unknown Protein (AHRD V1)"; NbS00040499g0016.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|1|1|2|0|288; (*GB) gi|359485993|ref|XP_002270228.2| (e_value=6e-138) PREDICTED: uncharacterized oxidoreductase ykwC-like [Vitis vinifera];; (*SWP) sp|O34948|YKWC_BACSU (e_value=1e-57) Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1;; (*TAIR) AT1G71170.1 (e_value=6e-103) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr1:26830673-26831572 FORWARD LENGTH=299;; (*ITAG) Solyc01g081510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73219130-73220362 transcript_region:SL2.40ch01:73219130..73220362+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"3-hydroxyisobutyrate dehydrogenase (AHRD V1 ***- D8MAS0_BLAHO); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00040499g0026.1 protein AED:0.12 eAED:0.13 QI:0|0.33|0.28|0.71|1|1|7|0|339; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=1e-136) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=6e-93) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=4e-94) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=1e-153) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00040499g0025.1 protein AED:0.19 eAED:0.19 QI:274|0.92|0.9|1|0.97|0.97|40|290|1613; (*GB) gi|116047945|gb|ABJ53198.1| (e_value=0.0) myosin XI-F [Nicotiana benthamiana];; (*SWP) sp|P54697|MYOJ_DICDI (e_value=0.0) Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2;; (*TAIR) AT2G31900.1 (e_value=0.0) | Symbols: XIF, ATXIF, ATMYO5 | myosin-like protein XIF | chr2:13560760-13569623 REVERSE LENGTH=1556;; (*ITAG) Solyc01g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73239713-73251780 transcript_region:SL2.40ch01:73239713..73251780- go_terms:GO:0060001 functional_description:"Myosin XI-F (AHRD V1 ***- B0CN60_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00040499g0028.1 protein AED:0.22 eAED:0.22 QI:107|0.75|0.6|1|1|1|5|0|293; (*GB) gi|255544039|ref|XP_002513082.1| (e_value=3e-116) annexin, putative [Ricinus communis];; (*SWP) sp|Q9SE45|ANXD3_ARATH (e_value=7e-93) Annexin D3 OS=Arabidopsis thaliana GN=ANN3 PE=2 SV=2;; (*TAIR) AT2G38760.1 (e_value=5e-94) | Symbols: ANNAT3, ANN3 | annexin 3 | chr2:16201086-16202490 FORWARD LENGTH=321;; (*ITAG) Solyc01g097510.2.1 (e_value=6e-127) genomic_reference:SL2.40ch01 gene_region:80096980-80100082 transcript_region:SL2.40ch01:80096980..80100082- go_terms:GO:0005544 functional_description:"Annexin 3 (AHRD V1 ***- A9X4R3_BRAJU); contains Interpro domain(s) IPR015472 Annexin like protein IPR001464 Annexin "; GO:0005544 NbS00040499g0023.1 protein AED:0.27 eAED:0.27 QI:0|0.89|0.95|1|0.78|0.85|20|105|664; (*GB) gi|255565956|ref|XP_002523966.1| (e_value=0.0) utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9SDX3|UGPA_MUSAC (e_value=1e-111) UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1;; (*TAIR) AT3G03250.1 (e_value=5e-95) | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE 1 | chr3:749761-754014 REVERSE LENGTH=469;; (*ITAG) Solyc01g081520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73222596-73233236 transcript_region:SL2.40ch01:73222596..73233236- go_terms:GO:0003983,GO:0042802 functional_description:"30S ribosomal protein S2 (AHRD V1 *-*- RS2_RHOCS); contains Interpro domain(s) IPR002618 UTP--glucose-1-phosphate uridylyltransferase "; GO:0003983,GO:0042802 NbS00001872g0009.1 protein AED:0.19 eAED:0.19 QI:370|0.81|0.83|1|0.63|0.58|12|302|387; (*GB) gi|225424118|ref|XP_002283058.1| (e_value=0.0) PREDICTED: phosphatidylserine synthase 2 [Vitis vinifera];; (*SWP) sp|E7EY42|PTSS2_DANRE (e_value=1e-82) Phosphatidylserine synthase 2 OS=Danio rerio GN=ptdss2 PE=3 SV=1;; (*TAIR) AT1G15110.2 (e_value=0.0) | Symbols: | phosphatidyl serine synthase family protein | chr1:5199594-5201988 FORWARD LENGTH=453;; (*ITAG) Solyc05g008580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2893045-2899330 transcript_region:SL2.40ch05:2893045..2899330- go_terms:GO:0003882 functional_description:"Phosphatidylserine synthase 2 (AHRD V1 ***- B6TFK2_MAIZE); contains Interpro domain(s) IPR004277 Phosphatidyl serine synthase "; GO:0003882 NbS00001872g0010.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0|1|0.25|0.4|5|0|284; (*GB) gi|224108387|ref|XP_002314829.1| (e_value=6e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SQI3|FATB_GOSHI (e_value=4e-48) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1;; (*TAIR) AT1G08510.1 (e_value=5e-49) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc05g008570.1.1 (e_value=9e-168) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2888538-2891808 transcript_region:SL2.40ch05:2888538..2891808+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl ACP-thioesterase (AHRD V1 **** A9P5P1_ARAHY); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00001872g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0.83|1|0.2|0.33|6|1323|692; (*GB) gi|225424122|ref|XP_002280156.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g22960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P0C7Q9|PPR56_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1;; (*TAIR) AT1G22960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8128086-8130242 REVERSE LENGTH=718;; (*ITAG) Solyc05g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2880075-2882339 transcript_region:SL2.40ch05:2880075..2882339+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017852g0018.1 protein AED:0.15 eAED:0.15 QI:230|0.85|0.75|1|0.85|0.75|8|159|569; (*GB) gi|255541446|ref|XP_002511787.1| (e_value=0.0) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LPD2|GENL1_ARATH (e_value=0.0) Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2 SV=3;; (*TAIR) AT1G01880.1 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr1:306558-308991 REVERSE LENGTH=599;; (*ITAG) Solyc01g091820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77129836-77135609 transcript_region:SL2.40ch01:77129836..77135609- go_terms:GO:0048256,GO:0003697,GO:0003690 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-** D7DTU0_METV3); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0048256,GO:0003697,GO:0003690 NbS00017852g0019.1 protein AED:0.09 eAED:0.25 QI:20|0|0|1|0|0.14|7|0|461; (*GB) gi|312282885|dbj|BAJ34308.1| (e_value=9e-17) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=3e-15) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=2e-16) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc01g091810.1.1 (e_value=4e-149) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77126098-77128541 transcript_region:SL2.40ch01:77126098..77128541- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 10 (AHRD V1 *-*- Q948L2_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0006355,GO:0045449 NbS00017852g0020.1 protein AED:0.27 eAED:0.27 QI:42|0.88|0.9|1|0.66|0.8|10|543|344; (*GB) gi|225453766|ref|XP_002270274.1| (e_value=9e-150) PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera];; (*SWP) sp|Q6ME80|RSMA_PARUW (e_value=1e-53) Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2;; (*TAIR) AT1G01860.1 (e_value=2e-143) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343;; (*ITAG) Solyc01g091800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77119410-77125807 transcript_region:SL2.40ch01:77119410..77125807- go_terms:GO:0000154,GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 ***- D6YS21_WADCW); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000154,GO:0006364 NbS00017852g0021.1 protein AED:0.17 eAED:0.17 QI:178|0.88|0.9|1|0.66|0.6|10|253|334; (*GB) gi|225453762|ref|XP_002274443.1| (e_value=4e-179) PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LEW8|FN3KR_ARATH (e_value=3e-168) Protein-ribulosamine 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=At3g61080 PE=1 SV=2;; (*TAIR) AT3G61080.1 (e_value=2e-169) | Symbols: | Protein kinase superfamily protein | chr3:22607152-22608883 FORWARD LENGTH=326;; (*ITAG) Solyc01g091780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77112343-77117902 transcript_region:SL2.40ch01:77112343..77117902+ functional_description:"Fructosamine kinase family protein (AHRD V1 ***- D7LS54_ARALY); contains Interpro domain(s) IPR016477 Fructosamine/Ketosamine-3-kinase "; NbS00017852g0006.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|224127522|ref|XP_002320095.1| (e_value=6e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G01840.1 (e_value=6e-24) | Symbols: | unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:303650-304108 FORWARD LENGTH=152;; (*ITAG) Solyc01g091790.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:77118580-77119211 transcript_region:SL2.40ch01:77118580..77119211+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017852g0022.1 protein AED:0.39 eAED:0.40 QI:0|0.5|0.4|0.8|0.5|0.8|5|0|228; (*GB) gi|255541456|ref|XP_002511792.1| (e_value=7e-88) ring finger protein, putative [Ricinus communis];; (*SWP) sp|P93823|ATL1_ARATH (e_value=3e-19) RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1;; (*TAIR) AT1G04360.1 (e_value=3e-20) | Symbols: | RING/U-box superfamily protein | chr1:1167507-1168652 REVERSE LENGTH=381;; (*ITAG) Solyc01g091770.2.1 (e_value=7e-118) genomic_reference:SL2.40ch01 gene_region:77108483-77111321 transcript_region:SL2.40ch01:77108483..77111321+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00007890g0009.1 protein AED:0.12 eAED:0.12 QI:1731|0.71|0.5|1|0.28|0|8|219|474; (*GB) gi|359485737|ref|XP_003633326.1| (e_value=5e-157) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like [Vitis vinifera];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=8e-135) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT4G03230.1 (e_value=5e-161) | Symbols: | S-locus lectin protein kinase family protein | chr4:1419278-1422828 REVERSE LENGTH=1010;; (*ITAG) Solyc02g078750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37972957-37977532 transcript_region:SL2.40ch02:37972957..37977532+ go_terms:GO:0004672 functional_description:"Receptor protein kinase (AHRD V1 **** Q40096_IPOTF); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00010152g0201.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|66 NbS00039202g0011.1 protein AED:0.16 eAED:0.16 QI:246|0.88|0.83|1|0.82|0.83|18|448|457; (*GB) gi|239582692|dbj|BAH70368.1| (e_value=0.0) DnaJ-like protein [Nicotiana tabacum];; (*SWP) sp|Q38813|DNAJ1_ARATH (e_value=1e-85) Chaperone protein dnaJ 1, mitochondrial OS=Arabidopsis thaliana GN=ATJ1 PE=2 SV=2;; (*TAIR) AT5G48030.1 (e_value=2e-173) | Symbols: GFA2 | gametophytic factor 2 | chr5:19466298-19469753 REVERSE LENGTH=456;; (*ITAG) Solyc01g086740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73447785-73457353 transcript_region:SL2.40ch01:73447785..73457353+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TA99_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00039202g0007.1 protein AED:0.37 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|94; (*GB) gi|357163432|ref|XP_003579729.1| (e_value=3e-39) PREDICTED: LOW QUALITY PROTEIN: histone H3.2-like [Brachypodium distachyon];; (*SWP) sp|P68428|H32_WHEAT (e_value=1e-40) Histone H3.2 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G65360.1 (e_value=8e-42) | Symbols: | Histone superfamily protein | chr5:26120099-26120509 REVERSE LENGTH=136;; (*ITAG) Solyc10g008910.1.1 (e_value=7e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:2935607-2936017 transcript_region:SL2.40ch10:2935607..2936017+ go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- D8L9K7_WHEAT); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00039202g0008.1 protein AED:0.42 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|201; (*GB) gi|359488543|ref|XP_002278038.2| (e_value=1e-65) PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera];; (*TAIR) AT3G26670.3 (e_value=5e-66) | Symbols: | Protein of unknown function (DUF803) | chr3:9798236-9800562 REVERSE LENGTH=441;; (*ITAG) Solyc01g086730.2.1 (e_value=2e-84) genomic_reference:SL2.40ch01 gene_region:73445060-73446574 transcript_region:SL2.40ch01:73445060..73446574+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- Q4WRL6_ASPFU); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbS00039202g0012.1 protein AED:0.21 eAED:0.23 QI:158|0.70|0.64|0.96|0.81|0.78|28|0|1301; (*GB) gi|255544272|ref|XP_002513198.1| (e_value=0.0) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|B0W2S0|K0664_CULQU (e_value=2e-102) Protein KIAA0664 homolog OS=Culex quinquefasciatus GN=CPIJ001445 PE=3 SV=1;; (*TAIR) AT3G52140.1 (e_value=0.0) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr3:19333232-19341295 FORWARD LENGTH=1403;; (*ITAG) Solyc01g086750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73460546-73476879 transcript_region:SL2.40ch01:73460546..73476879- go_terms:GO:0003743 functional_description:"Protein TIF31 homolog (AHRD V1 ***- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0003743 NbS00039202g0015.1 protein AED:0.07 eAED:0.20 QI:62|0|0|1|0|0|2|0|386; (*GB) gi|260825162|ref|XP_002607536.1| (e_value=9e-11) hypothetical protein BRAFLDRAFT_249405 [Branchiostoma floridae];; (*ITAG) Solyc01g073980.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00030057g0012.1 protein AED:0.34 eAED:0.34 QI:166|1|1|1|0.66|0.75|4|524|182; (*GB) gi|351721046|ref|NP_001238732.1| (e_value=1e-40) uncharacterized protein LOC100527102 [Glycine max];; (*TAIR) AT4G13220.1 (e_value=5e-37) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7674431-7675275 REVERSE LENGTH=176;; (*ITAG) Solyc06g007990.2.1 (e_value=7e-62) genomic_reference:SL2.40ch06 gene_region:1846027-1849951 transcript_region:SL2.40ch06:1846027..1849951- functional_description:"Unknown Protein (AHRD V1)"; NbS00030057g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|89 NbS00030057g0015.1 protein AED:0.17 eAED:0.17 QI:237|1|0.93|1|0.85|0.8|15|188|620; (*GB) gi|24459979|dbj|BAC22617.1| (e_value=0.0) UDP-glucose:sterol 3-O-glucosyltransferase [Panax ginseng];; (*SWP) sp|Q8NJS1|ATG26_LEPMC (e_value=5e-61) Sterol 3-beta-glucosyltransferase OS=Leptosphaeria maculans GN=ATG26 PE=3 SV=1;; (*TAIR) AT3G07020.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2217841-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc06g007980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1835086-1845250 transcript_region:SL2.40ch06:1835086..1845250+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00023930g0009.1 protein AED:0.20 eAED:0.20 QI:581|0.9|0.72|1|0.9|0.81|11|0|783; (*GB) gi|225442323|ref|XP_002280107.1| (e_value=0.0) PREDICTED: inactive protein kinase SELMODRAFT_444075 isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=1e-120) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc03g121440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63606458-63610114 transcript_region:SL2.40ch03:63606458..63610114+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023930g0008.1 protein AED:0.14 eAED:0.14 QI:81|0.9|0.90|1|0.8|1|11|409|342; (*GB) gi|225442319|ref|XP_002279868.1| (e_value=9e-118) PREDICTED: uncharacterized protein LOC100263499 [Vitis vinifera];; (*SWP) sp|Q9WVB0|RBPMS_MOUSE (e_value=1e-16) RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms PE=2 SV=1;; (*TAIR) AT3G13700.2 (e_value=2e-117) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4490859-4492632 REVERSE LENGTH=287;; (*ITAG) Solyc03g121450.2.1 (e_value=2e-168) genomic_reference:SL2.40ch03 gene_region:63610599-63615516 transcript_region:SL2.40ch03:63610599..63615516- go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- Q7ZUL7_DANRE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00024434g0001.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|1|1|3|143|606; (*GB) gi|224102303|ref|XP_002312630.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9N5|Y1668_ARATH (e_value=9e-84) Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=1 SV=1;; (*TAIR) AT1G67510.1 (e_value=7e-169) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:25297477-25300184 REVERSE LENGTH=719;; (*ITAG) Solyc05g015150.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:9920907-9925045 transcript_region:SL2.40ch05:9920907..9925045+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00010806g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|0.6|1|0.75|0.6|5|0|523; (*GB) gi|41059855|gb|AAR99392.1| (e_value=0.0) ACC synthase ACS3a [Nicotiana attenuata];; (*SWP) sp|P31531|1A1C_SOYBN (e_value=0.0) 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1;; (*TAIR) AT4G11280.1 (e_value=0.0) | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 | chr4:6864168-6865922 FORWARD LENGTH=495;; (*ITAG) Solyc08g081540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61733933-61736466 transcript_region:SL2.40ch08:61733933..61736466+ go_terms:GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** Q96580_SOLLC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0016847 NbS00015665g0011.1 protein AED:0.17 eAED:0.17 QI:97|1|1|1|1|1|2|290|445; (*GB) gi|356497667|ref|XP_003517681.1| (e_value=3e-69) PREDICTED: uncharacterized protein LOC100777884 [Glycine max];; (*TAIR) AT3G53440.2 (e_value=1e-41) | Symbols: | Homeodomain-like superfamily protein | chr3:19810936-19812474 FORWARD LENGTH=512;; (*ITAG) Solyc01g068540.2.1 (e_value=6e-148) genomic_reference:SL2.40ch01 gene_region:70151031-70157046 transcript_region:SL2.40ch01:70151031..70157046+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017877 MYB-like "; NbS00015665g0015.1 protein AED:0.19 eAED:0.19 QI:434|0.83|0.57|1|0.66|0.71|7|477|643; (*GB) gi|359487196|ref|XP_002269821.2| (e_value=3e-128) PREDICTED: uncharacterized protein LOC100248068 [Vitis vinifera];; (*TAIR) AT3G54500.1 (e_value=2e-70) | Symbols: | BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 183 Blast hits to 175 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 38; Fungi - 11; Plants - 120; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:20175792-20178737 REVERSE LENGTH=648;; (*ITAG) Solyc01g105120.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:85139202-85148793 transcript_region:SL2.40ch01:85139202..85148793- functional_description:"Os01g0498200 protein (Fragment) (AHRD V1 *-*- Q0JMJ0_ORYSJ)"; NbS00059237g0004.1 protein AED:0.13 eAED:0.14 QI:0|1|0.9|1|0.77|0.9|10|0|404; (*GB) gi|356502440|ref|XP_003520027.1| (e_value=0.0) PREDICTED: sulfate transporter 4.1, chloroplastic-like [Glycine max];; (*SWP) sp|Q8GYH8|SUT42_ARATH (e_value=0.0) Probable sulfate transporter 4.2 OS=Arabidopsis thaliana GN=SULTR4;2 PE=2 SV=2;; (*TAIR) AT3G12520.2 (e_value=0.0) | Symbols: SULTR4;2 | sulfate transporter 4;2 | chr3:3967976-3971891 REVERSE LENGTH=661;; (*ITAG) Solyc05g054740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63739210-63747859 transcript_region:SL2.40ch05:63739210..63747859+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00031491g0008.1 protein AED:0.08 eAED:0.08 QI:77|0.8|0.66|1|0.8|0.66|6|234|487; (*GB) gi|255562715|ref|XP_002522363.1| (e_value=2e-114) hypothetical protein RCOM_0603420 [Ricinus communis];; (*SWP) sp|Q96GN5|CDA7L_HUMAN (e_value=8e-29) Cell division cycle-associated 7-like protein OS=Homo sapiens GN=CDCA7L PE=1 SV=2;; (*TAIR) AT2G23530.1 (e_value=2e-103) | Symbols: | Zinc-finger domain of monoamine-oxidase A repressor R1 | chr2:10020652-10022804 REVERSE LENGTH=552;; (*ITAG) Solyc02g090200.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46403055-46408254 transcript_region:SL2.40ch02:46403055..46408254- functional_description:"Cell division cycle associated 7 (AHRD V1 *-*- Q5M7M4_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00031491g0009.1 protein AED:0.13 eAED:0.17 QI:0|0.33|0.28|1|0.33|0.28|7|0|402; (*GB) gi|255562709|ref|XP_002522360.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|O80470|GDL38_ARATH (e_value=0.0) GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1;; (*TAIR) AT2G23540.1 (e_value=0.0) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:10024366-10026058 FORWARD LENGTH=387;; (*ITAG) Solyc02g090210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46413177-46415425 transcript_region:SL2.40ch02:46413177..46415425+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At2g23540 (AHRD V1 **** GDL38_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00016433g0016.1 protein AED:0.10 eAED:0.10 QI:265|0.8|1|1|1|1|6|254|240; (*GB) gi|18398123|ref|NP_565388.1| (e_value=6e-99) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|Q9GZT6|CC90B_HUMAN (e_value=2e-18) Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens GN=CCDC90B PE=1 SV=2;; (*TAIR) AT2G16460.1 (e_value=1e-101) | Symbols: | Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230;; (*ITAG) Solyc01g110320.2.1 (e_value=3e-125) genomic_reference:SL2.40ch01 gene_region:88811046-88814756 transcript_region:SL2.40ch01:88811046..88814756- go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00016433g0017.1 protein AED:0.23 eAED:0.24 QI:195|1|0.9|1|1|1|10|0|371; (*GB) gi|255543841|ref|XP_002512983.1| (e_value=0.0) clathrin binding protein, putative [Ricinus communis];; (*TAIR) AT4G34660.1 (e_value=0.0) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=368;; (*ITAG) Solyc01g110300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88788002-88793586 transcript_region:SL2.40ch01:88788002..88793586- go_terms:GO:0030276 functional_description:"Clathrin binding protein (AHRD V1 **-* B6STF7_MAIZE); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00016433g0024.1 protein AED:0.24 eAED:0.24 QI:157|0.72|0.66|1|0.18|0.41|12|237|466; (*GB) gi|255543829|ref|XP_002512977.1| (e_value=6e-166) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=7e-158) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.2 (e_value=3e-161) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=556;; (*ITAG) Solyc01g110280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88754913-88761700 transcript_region:SL2.40ch01:88754913..88761700- go_terms:GO:0016020 functional_description:"DNA-damage-inducible protein F (AHRD V1 **-- B4V9L8_9ACTO); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00016433g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|326; (*GB) gi|37572449|dbj|BAC98494.1| (e_value=0.0) AG-motif binding protein-4 [Nicotiana tabacum];; (*SWP) sp|Q9FH57|GATA5_ARATH (e_value=4e-55) GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1;; (*TAIR) AT5G66320.2 (e_value=3e-56) | Symbols: GATA5 | GATA transcription factor 5 | chr5:26496208-26497309 REVERSE LENGTH=339;; (*ITAG) Solyc01g110310.2.1 (e_value=6e-153) genomic_reference:SL2.40ch01 gene_region:88806958-88808504 transcript_region:SL2.40ch01:88806958..88808504+ go_terms:GO:0031013,GO:0030674 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0031013,GO:0030674 NbS00016433g0021.1 protein AED:0.14 eAED:0.14 QI:0|1|0.66|1|1|1|3|479|237; (*GB) gi|356538720|ref|XP_003537849.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100779359 [Glycine max];; (*TAIR) AT2G21350.1 (e_value=7e-46) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:9136451-9137267 REVERSE LENGTH=222;; (*ITAG) Solyc01g110270.2.1 (e_value=3e-104) genomic_reference:SL2.40ch01 gene_region:88752539-88755637 transcript_region:SL2.40ch01:88752539..88755637+ go_terms:GO:0003723 functional_description:"Crs1/yhby domain containing protein (Fragment) (AHRD V1 *-*- A6N061_ORYSI); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00016433g0003.1 protein AED:0.18 eAED:0.24 QI:0|0.5|0.33|1|1|1|3|0|122; (*GB) gi|255583494|ref|XP_002532505.1| (e_value=2e-54) 40S ribosomal protein S11, putative [Ricinus communis];; (*SWP) sp|Q9M5M1|RS11_EUPES (e_value=1e-52) 40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1;; (*TAIR) AT5G23740.1 (e_value=2e-53) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=6e-57) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00016433g0002.1 protein AED:0.30 eAED:0.30 QI:81|1|1|1|0.85|0.86|15|280|411; (*GB) gi|1706774|sp|P53800.1|FDFT_NICBE (e_value=0.0) RecName: Full=Squalene synthase; Short=SQS; Short=SS; AltName: Full=FPP:FPP farnesyltransferase; AltName: Full=Farnesyl-diphosphate farnesyltransferase;; (*SWP) sp|P53800|FDFT_NICBE (e_value=0.0) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=0.0) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc01g110290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88779362-88786983 transcript_region:SL2.40ch01:88779362..88786983+ go_terms:GO:0005515,GO:0004310 functional_description:"Squalene synthase (AHRD V1 ***- D0VFU8_SOLLC); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0005515,GO:0004310 NbS00046956g0008.1 protein AED:0.29 eAED:0.29 QI:77|0.5|0.45|1|0.6|0.63|11|257|388; (*GB) gi|224083793|ref|XP_002307125.1| (e_value=1e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|O64862|CTU1_ARATH (e_value=3e-165) Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2;; (*TAIR) AT2G44270.1 (e_value=2e-166) | Symbols: ROL5 | repressor of lrx1 | chr2:18298078-18300153 REVERSE LENGTH=355;; (*ITAG) Solyc08g074590.2.1 (e_value=4e-137) genomic_reference:SL2.40ch08 gene_region:55854463-55859432 transcript_region:SL2.40ch08:55854463..55859432- go_terms:GO:0005515,GO:0000049 functional_description:"tRNA 2-thiocytidine biosynthesis protein TtcA (AHRD V1 **** TTCA_MYXXD); contains Interpro domain(s) IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA "; GO:0005515,GO:0000049 NbS00046956g0007.1 protein AED:0.36 eAED:0.40 QI:0|0|0|1|1|1|3|0|472; (*GB) gi|255563997|ref|XP_002522998.1| (e_value=1e-119) Protein MOS2, putative [Ricinus communis];; (*SWP) sp|Q9C801|MOS2_ARATH (e_value=1e-111) Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1;; (*TAIR) AT1G33520.1 (e_value=9e-113) | Symbols: MOS2 | D111/G-patch domain-containing protein | chr1:12157488-12158876 REVERSE LENGTH=462;; (*ITAG) Solyc08g074570.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55846727-55848184 transcript_region:SL2.40ch08:55846727..55848184+ go_terms:GO:0005515,GO:0003723 functional_description:"G patch domain and KOW motifs-containing protein (AHRD V1 *--- GPKOW_XENLA); contains Interpro domain(s) IPR005824 KOW "; GO:0005515,GO:0003723 NbS00046956g0004.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|59 NbS00012727g0004.1 protein AED:0.13 eAED:0.13 QI:496|0.5|0.33|1|1|1|3|0|340; (*GB) gi|350539725|ref|NP_001234767.1| (e_value=0.0) putative GID1-like gibberellin receptor [Solanum lycopersicum];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=0.0) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=0.0) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc09g074270.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61555421-61557248 transcript_region:SL2.40ch09:61555421..61557248- go_terms:GO:0005515 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECO81); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00002158g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|396; (*GB) gi|225423977|ref|XP_002282578.1| (e_value=1e-115) PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera];; (*SWP) sp|Q8RWD0|COL16_ARATH (e_value=6e-88) Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2;; (*TAIR) AT1G25440.1 (e_value=4e-89) | Symbols: | B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417;; (*ITAG) Solyc04g007210.2.1 (e_value=1e-161) genomic_reference:SL2.40ch04 gene_region:904265-906430 transcript_region:SL2.40ch04:904265..906430- go_terms:GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 16 (AHRD V1 ***- B6TEI1_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00002158g0006.1 protein AED:0.21 eAED:0.25 QI:0|0|0|1|0.5|0.33|3|0|247; (*GB) gi|113205445|gb|AAW28576.2| (e_value=1e-41) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00002158g0005.1 protein AED:0.59 eAED:1.00 QI:45|0|0|0.66|0|0|3|75|43 NbS00011968g0004.1 protein AED:0.34 eAED:0.35 QI:67|0.38|0.28|0.92|0.30|0.57|14|0|545; (*GB) gi|255577116|ref|XP_002529442.1| (e_value=0.0) glycosyltransferase, putative [Ricinus communis];; (*SWP) sp|P37287|PIGA_HUMAN (e_value=8e-148) Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Homo sapiens GN=PIGA PE=1 SV=1;; (*TAIR) AT3G45100.2 (e_value=0.0) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00028166g0002.1 protein AED:0.89 eAED:0.98 QI:0|0|0|0.44|1|1|9|0|305; (*GB) gi|224068275|ref|XP_002302693.1| (e_value=1e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT2G46915.1 (e_value=5e-37) | Symbols: | Protein of unknown function (DUF3754) | chr2:19274018-19277707 REVERSE LENGTH=708; NbS00055059g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|101; (*GB) gi|29839345|sp|Q8H1T3.1|FRI2_TOBAC (e_value=4e-54) RecName: Full=Ferritin-2, chloroplastic; AltName: Full=NtFer2; Flags: Precursor;; (*SWP) sp|Q8H1T3|FRI2_TOBAC (e_value=1e-55) Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1;; (*TAIR) AT2G40300.1 (e_value=8e-23) | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831501-16833214 REVERSE LENGTH=259;; (*ITAG) Solyc05g052470.2.1 (e_value=2e-50) genomic_reference:SL2.40ch05 gene_region:61831795-61835156 transcript_region:SL2.40ch05:61831795..61835156+ go_terms:GO:0008198,GO:0042802 functional_description:"Ferritin (AHRD V1 ***- A7UGG8_SOLTU); contains Interpro domain(s) IPR001519 Ferritin, N-terminal "; GO:0008198,GO:0042802 NbS00007154g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|231; (*GB) gi|255556043|ref|XP_002519056.1| (e_value=3e-82) rnf5, putative [Ricinus communis];; (*SWP) sp|Q6R567|RMA1_CAPAN (e_value=1e-49) E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1 PE=1 SV=1;; (*TAIR) AT4G27470.1 (e_value=1e-45) | Symbols: ATRMA3, RMA3 | RING membrane-anchor 3 | chr4:13735576-13736307 FORWARD LENGTH=243;; (*ITAG) Solyc02g078320.1.1 (e_value=3e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37628709-37629404 transcript_region:SL2.40ch02:37628709..37629404+ go_terms:GO:0004842 functional_description:"RING finger protein 5 (AHRD V1 *--- B6UBI0_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00021818g0002.1 protein AED:0.18 eAED:0.18 QI:152|1|1|1|0.8|0.75|16|452|635; (*GB) gi|13173434|gb|AAK14408.1| (e_value=0.0) phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum];; (*SWP) sp|P55195|PUR6_VIGAC (e_value=0.0) Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1;; (*TAIR) AT2G37690.1 (e_value=0.0) | Symbols: | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative | chr2:15806111-15810240 FORWARD LENGTH=642;; (*ITAG) Solyc11g006340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00037827g0018.1 protein AED:0.05 eAED:0.05 QI:336|1|1|1|0.83|1|7|472|319; (*GB) gi|224124124|ref|XP_002319251.1| (e_value=9e-138) predicted protein [Populus trichocarpa];; (*TAIR) AT1G65020.1 (e_value=5e-128) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319;; (*ITAG) Solyc03g097180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52943951-52951087 transcript_region:SL2.40ch03:52943951..52951087- functional_description:"(RAP Annotation release2) NERD domain containing protein (AHRD V1 ***- Q336N9_ORYSJ); contains Interpro domain(s) IPR011528 NERD "; NbS00037827g0019.1 protein AED:0.03 eAED:0.03 QI:123|0.75|0.8|1|0.75|0.8|5|238|315; (*GB) gi|255558075|ref|XP_002520066.1| (e_value=2e-133) cinnamoyl-CoA reductase, putative [Ricinus communis];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=1e-21) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT2G23910.1 (e_value=1e-70) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10177902-10179789 FORWARD LENGTH=304;; (*ITAG) Solyc03g097170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52940498-52943588 transcript_region:SL2.40ch03:52940498..52943588+ go_terms:GO:0004022 functional_description:"Cinnamoyl-CoA reductase-like protein (AHRD V1 ***- Q9M0B3_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022 NbS00037827g0022.1 protein AED:0.09 eAED:0.09 QI:763|1|1|1|0.66|0.57|7|225|99; (*GB) gi|225454751|ref|XP_002273780.1| (e_value=2e-35) PREDICTED: N-alpha-acetyltransferase 60-like [Vitis vinifera];; (*TAIR) AT5G16800.2 (e_value=5e-31) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:5524509-5526295 REVERSE LENGTH=270;; (*ITAG) Solyc03g097140.2.1 (e_value=2e-58) genomic_reference:SL2.40ch03 gene_region:52917017-52920378 transcript_region:SL2.40ch03:52917017..52920378+ go_terms:GO:0008152 functional_description:"N-acetyltransferase 15 (AHRD V1 ***- D3PJE2_9MAXI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00037827g0015.1 protein AED:0.10 eAED:0.10 QI:946|0.86|0.87|0.93|0.73|0.75|16|634|667; (*GB) gi|255558071|ref|XP_002520064.1| (e_value=0.0) U3 small nucleolar RNA-associated protein, putative [Ricinus communis];; (*SWP) sp|Q2KJJ5|TBL3_BOVIN (e_value=6e-132) Transducin beta-like protein 3 OS=Bos taurus GN=TBL3 PE=2 SV=1;; (*TAIR) AT5G16750.1 (e_value=0.0) | Symbols: TOZ | Transducin family protein / WD-40 repeat family protein | chr5:5504541-5509266 REVERSE LENGTH=876;; (*ITAG) Solyc03g097160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52927685-52937165 transcript_region:SL2.40ch03:52927685..52937165+ go_terms:GO:0030515 functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AUL0_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00037827g0021.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|262; (*GB) gi|30024598|dbj|BAC75671.1| (e_value=1e-48) transcription factor MYB101 [Lotus japonicus];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=2e-39) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT5G16770.2 (e_value=7e-51) | Symbols: AtMYB9, MYB9 | myb domain protein 9 | chr5:5515209-5516734 FORWARD LENGTH=336;; (*ITAG) Solyc04g074170.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57755497-57757061 transcript_region:SL2.40ch04:57755497..57757061+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *--* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00024564g0001.1 protein AED:0.31 eAED:0.35 QI:0|1|0.75|1|0.66|0.5|4|440|112; (*GB) gi|209967441|gb|ACJ02349.1| (e_value=4e-71) 60S ribosomal protein L35a [Vernicia fordii];; (*SWP) sp|Q9C912|R35A3_ARATH (e_value=9e-72) 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1;; (*TAIR) AT1G74270.1 (e_value=7e-73) | Symbols: | Ribosomal protein L35Ae family protein | chr1:27928415-27929466 REVERSE LENGTH=112;; (*ITAG) Solyc05g052800.2.1 (e_value=4e-69) genomic_reference:SL2.40ch05 gene_region:62130017-62132095 transcript_region:SL2.40ch05:62130017..62132095- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35a (AHRD V1 ***- B6VC50_VERFO); contains Interpro domain(s) IPR001780 Ribosomal protein L35Ae "; GO:0003735 NbS00007270g0010.1 protein AED:0.08 eAED:0.09 QI:0|1|0.6|1|1|1|5|0|141; (*GB) gi|225462227|ref|XP_002271791.1| (e_value=1e-61) PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Vitis vinifera];; (*SWP) sp|Q40519|PSBR_TOBAC (e_value=2e-58) Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1;; (*TAIR) AT1G79040.1 (e_value=4e-54) | Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140;; (*ITAG) Solyc07g066310.2.1 (e_value=2e-58) genomic_reference:SL2.40ch07 gene_region:65009418-65011119 transcript_region:SL2.40ch07:65009418..65011119+ go_terms:GO:0042651 functional_description:"photosystem II polypeptide (AHRD V1 ***- Q6V7X5_TRIPR); contains Interpro domain(s) IPR006814 Photosystem II protein PsbR "; GO:0042651 NbS00007270g0013.1 protein AED:0.37 eAED:0.39 QI:0|0.5|0.4|1|1|1|5|0|381; (*GB) gi|255558669|ref|XP_002520359.1| (e_value=0.0) porphobilinogen deaminase, putative [Ricinus communis];; (*SWP) sp|Q43082|HEM3_PEA (e_value=0.0) Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1;; (*TAIR) AT5G08280.1 (e_value=0.0) | Symbols: HEMC | hydroxymethylbilane synthase | chr5:2663763-2665596 REVERSE LENGTH=382;; (*ITAG) Solyc07g066470.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65112777-65116118 transcript_region:SL2.40ch07:65112777..65116118- go_terms:GO:0004418 functional_description:"Porphobilinogen deaminase (AHRD V1 ***- B6TVP0_MAIZE); contains Interpro domain(s) IPR000860 Tetrapyrrole biosynthesis, hydroxymethylbilane synthase "; GO:0004418 NbS00032595g0001.1 protein AED:0.32 eAED:0.32 QI:596|0.71|0.75|1|0.71|0.75|8|507|185; (*GB) gi|297737730|emb|CBI26931.3| (e_value=1e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G01275.2 (e_value=3e-21) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259;; (*ITAG) Solyc04g007600.2.1 (e_value=3e-72) genomic_reference:SL2.40ch04 gene_region:1283981-1287563 transcript_region:SL2.40ch04:1283981..1287563+ go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00032595g0009.1 protein AED:0.22 eAED:0.24 QI:0|0.88|0.7|1|0.66|0.8|10|0|494; (*GB) gi|351727427|ref|NP_001238440.1| (e_value=0.0) protein disulfide family pdiq-1a precursor [Glycine max];; (*SWP) sp|Q8W4J3|QSOX1_ARATH (e_value=0.0) Sulfhydryl oxidase 1 OS=Arabidopsis thaliana GN=QSOX1 PE=2 SV=1;; (*TAIR) AT1G15020.2 (e_value=0.0) | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydryl oxidase 1 | chr1:5173341-5176105 REVERSE LENGTH=528;; (*ITAG) Solyc04g007610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1288587-1297443 transcript_region:SL2.40ch04:1288587..1297443- go_terms:GO:0045454,GO:0055114 functional_description:"Protein disulfide-isomerase (AHRD V1 *--- P93358_TOBAC); contains Interpro domain(s) IPR006863 Erv1/Alr "; GO:0045454,GO:0055114 NbS00039121g0001.1 protein AED:0.20 eAED:0.20 QI:198|1|1|1|0.92|0.86|15|326|887; (*GB) gi|302398563|gb|ADL36576.1| (e_value=0.0) ARF domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9ZTX8|ARFF_ARATH (e_value=0.0) Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2;; (*TAIR) AT1G30330.1 (e_value=0.0) | Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=933;; (*ITAG) Solyc07g043620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54884781-54890195 transcript_region:SL2.40ch07:54884781..54890195- go_terms:GO:0003700 functional_description:"Auxin response factor 6-1 (AHRD V1 **** D9IUY5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbS00004381g0002.1 protein AED:0.21 eAED:0.24 QI:0|1|0|1|1|1|2|0|205; (*ITAG) Solyc10g049530.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00020709g0001.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|71; (*TAIR) AT3G51550.1 (e_value=4e-14) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc02g089090.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:45568082-45571263 transcript_region:SL2.40ch02:45568082..45571263+ go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00012236g0001.1 protein AED:0.31 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|356517078|ref|XP_003527217.1| (e_value=6e-16) PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Glycine max];; (*TAIR) AT2G15530.3 (e_value=3e-16) | Symbols: | RING/U-box superfamily protein | chr2:6774150-6777068 FORWARD LENGTH=704;; (*ITAG) Solyc12g005510.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:297079-297660 transcript_region:SL2.40ch12:297079..297660+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00012236g0009.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|0|0|2|0|206; (*GB) gi|302813314|ref|XP_002988343.1| (e_value=8e-16) hypothetical protein SELMODRAFT_447294 [Selaginella moellendorffii];; (*TAIR) AT2G15530.3 (e_value=9e-16) | Symbols: | RING/U-box superfamily protein | chr2:6774150-6777068 FORWARD LENGTH=704;; (*ITAG) Solyc12g014070.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4889094-4892699 transcript_region:SL2.40ch12:4889094..4892699+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 ***- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00043915g0005.1 protein AED:0.29 eAED:0.29 QI:292|0.87|0.77|0.88|0.87|0.77|9|0|189; (*GB) gi|224136530|ref|XP_002326883.1| (e_value=4e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|O04905|UMPK_ARATH (e_value=4e-87) UMP/CMP kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1;; (*TAIR) AT5G26667.3 (e_value=3e-88) | Symbols: PYR6 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9276659-9278091 FORWARD LENGTH=202;; (*ITAG) Solyc08g077300.2.1 (e_value=4e-119) genomic_reference:SL2.40ch08 gene_region:58367659-58372762 transcript_region:SL2.40ch08:58367659..58372762- go_terms:GO:0009041 functional_description:"Adenylate kinase (AHRD V1 **** B6TE58_MAIZE); contains Interpro domain(s) IPR006266 UMP-CMP kinase "; GO:0009041 NbS00013979g0101.1 protein AED:0.13 eAED:0.13 QI:0|0.88|0.9|1|1|1|10|0|342 NbS00016697g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|2|365|139; (*GB) gi|225453293|ref|XP_002268179.1| (e_value=2e-31) PREDICTED: uncharacterized protein LOC100264994 isoform 1 [Vitis vinifera];; (*TAIR) AT4G17670.1 (e_value=2e-24) | Symbols: | Protein of unknown function (DUF581) | chr4:9833948-9834663 REVERSE LENGTH=159;; (*ITAG) Solyc01g088660.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:75185596-75186764 transcript_region:SL2.40ch01:75185596..75186764+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00029484g0003.1 protein AED:0.08 eAED:0.08 QI:86|1|1|1|0.8|0.66|6|125|525; (*GB) gi|1685087|gb|AAC49536.1| (e_value=0.0) diphenol oxidase [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g076830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59123721-59126117 transcript_region:SL2.40ch10:59123721..59126117- go_terms:GO:0048046,GO:0055114 functional_description:"Laccase 1a (AHRD V1 ***- B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0048046,GO:0055114 NbS00019656g0002.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|113; (*GB) gi|297737726|emb|CBI26927.3| (e_value=1e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G71090.1 (e_value=2e-33) | Symbols: | Auxin efflux carrier family protein | chr1:26812551-26813924 FORWARD LENGTH=457;; (*ITAG) Solyc02g091240.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47177496-47178854 transcript_region:SL2.40ch02:47177496..47178854- go_terms:GO:0009672 functional_description:"Auxin efflux carrier protein-like (AHRD V1 **** Q6YZX7_ORYSJ); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00019656g0006.1 protein AED:0.27 eAED:0.34 QI:8|0|0|1|0|0|2|0|256; (*GB) gi|255571296|ref|XP_002526597.1| (e_value=1e-69) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT1G71090.1 (e_value=2e-64) | Symbols: | Auxin efflux carrier family protein | chr1:26812551-26813924 FORWARD LENGTH=457;; (*ITAG) Solyc02g091240.1.1 (e_value=4e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47177496-47178854 transcript_region:SL2.40ch02:47177496..47178854- go_terms:GO:0009672 functional_description:"Auxin efflux carrier protein-like (AHRD V1 **** Q6YZX7_ORYSJ); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00027615g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.89|1|0.94|0.84|19|132|559; (*GB) gi|225425426|ref|XP_002271582.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267642 [Vitis vinifera];; (*SWP) sp|Q5M7C8|HORM1_XENLA (e_value=5e-22) HORMA domain-containing protein 1 OS=Xenopus laevis GN=hormad1 PE=2 SV=1;; (*TAIR) AT1G67370.1 (e_value=0.0) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00027615g0006.1 protein AED:0.24 eAED:0.24 QI:233|1|1|1|1|1|6|475|276; (*GB) gi|161788876|dbj|BAF95072.1| (e_value=0.0) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42055|VDAC1_SOLTU (e_value=0.0) Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=5e-151) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc02g067460.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32236994-32239690 transcript_region:SL2.40ch02:32236994..32239690+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00012543g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|0.28|0.37|8|1111|630; (*GB) gi|359495888|ref|XP_003635109.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g24830-like [Vitis vinifera];; (*SWP) sp|Q8L6Y3|PP396_ARATH (e_value=2e-175) Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1;; (*TAIR) AT5G24830.1 (e_value=2e-176) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:8531226-8533266 FORWARD LENGTH=593;; (*ITAG) Solyc03g120070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62621404-62624956 transcript_region:SL2.40ch03:62621404..62624956+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031611g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|148; (*ITAG) Solyc04g053070.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00031611g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.4|0.5|0.83|0.8|0.66|6|114|134; (*GB) gi|255578546|ref|XP_002530136.1| (e_value=1e-22) 60S ribosomal protein L18a, plant, putative [Ricinus communis];; (*SWP) sp|Q8L9S1|R18A1_ARATH (e_value=1e-18) 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2;; (*TAIR) AT1G17080.1 (e_value=1e-23) | Symbols: | Ribosomal protein L18ae family | chr1:5840458-5841536 REVERSE LENGTH=154;; (*ITAG) Solyc12g011440.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:4258481-4261206 transcript_region:SL2.40ch12:4258481..4261206+ functional_description:"60S ribosomal protein L18A (AHRD V1 *-*- B6T286_MAIZE)"; NbS00031611g0003.1 protein AED:0.31 eAED:0.31 QI:244|0.42|0.5|0.87|1|1|8|232|305; (*GB) gi|225462956|ref|XP_002270140.1| (e_value=1e-111) PREDICTED: hydroxyacylglutathione hydrolase 3, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9C8L4|GLO2O_ARATH (e_value=7e-110) Hydroxyacylglutathione hydrolase 3, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3;; (*TAIR) AT1G53580.1 (e_value=5e-111) | Symbols: GLX2-3, ETHE1, GLY3 | glyoxalase II 3 | chr1:19991542-19993250 REVERSE LENGTH=294;; (*ITAG) Solyc07g061960.2.1 (e_value=5e-138) genomic_reference:SL2.40ch07 gene_region:62048573-62053940 transcript_region:SL2.40ch07:62048573..62053940+ go_terms:GO:0004416,GO:0047951 functional_description:"Hydroxyacylglutathione hydrolase (AHRD V1 **** D9J0E0_9CARY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0004416,GO:0047951 NbS00033310g0003.1 protein AED:0.12 eAED:0.13 QI:0|1|0.5|1|1|1|2|249|364; (*GB) gi|339790487|dbj|BAK52400.1| (e_value=0.0) receptor like protein kinase SOL2 [Solanum lycopersicum];; (*SWP) sp|Q9LYU7|CRN_ARATH (e_value=2e-152) Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis thaliana GN=CRN PE=1 SV=1;; (*TAIR) AT5G13290.2 (e_value=2e-153) | Symbols: SOL2, CRN | Protein kinase superfamily protein | chr5:4252924-4254215 REVERSE LENGTH=401;; (*ITAG) Solyc05g023760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29281405-29283531 transcript_region:SL2.40ch05:29281405..29283531+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase 5 (AHRD V1 ***- B6U5J8_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012039g0004.1 protein AED:0.03 eAED:0.03 QI:24|0|0|1|0|0.5|2|0|331; (*ITAG) Solyc04g015110.2.1 (e_value=4e-21) genomic_reference:SL2.40ch04 gene_region:5283852-5286177 transcript_region:SL2.40ch04:5283852..5286177+ functional_description:"Myosin heavy chain-like protein (Fragment) (AHRD V1 *--- Q5K5B1_ORYSA); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00017313g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|173; (*GB) gi|116778782|gb|ABK20993.1| (e_value=4e-90) unknown [Picea sitchensis];; (*SWP) sp|P46293|RS16_GOSHI (e_value=6e-89) 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1;; (*TAIR) AT2G09990.1 (e_value=2e-89) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146;; (*ITAG) Solyc04g026100.1.1 (e_value=2e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:24590324-24590767 transcript_region:SL2.40ch04:24590324..24590767+ go_terms:GO:0032183,GO:0003723 functional_description:"30S ribosomal protein S9 (AHRD V1 ***- C5JX04_AJEDS); contains Interpro domain(s) IPR000754 Ribosomal protein S9 "; GO:0032183,GO:0003723 NbS00017313g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.77|1|0.87|0.66|9|509|616; (*GB) gi|255544041|ref|XP_002513083.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q09809|YAB9_SCHPO (e_value=1e-19) Uncharacterized membrane protein C2G11.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2G11.09 PE=2 SV=2;; (*TAIR) AT3G54510.1 (e_value=0.0) | Symbols: | Early-responsive to dehydration stress protein (ERD4) | chr3:20180689-20183220 FORWARD LENGTH=617;; (*ITAG) Solyc01g068500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70131982-70142492 transcript_region:SL2.40ch01:70131982..70142492+ go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00009216g0013.1 protein AED:0.20 eAED:0.24 QI:0|0.5|0.28|1|0.5|0.57|7|0|280; (*GB) gi|126363776|dbj|BAF47752.1| (e_value=3e-143) multi antimicrobial extrusion family protein [Nicotiana tabacum];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-53) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=4e-109) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc02g080480.2.1 (e_value=5e-145) genomic_reference:SL2.40ch02 gene_region:39263626-39266662 transcript_region:SL2.40ch02:39263626..39266662- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_EDWI9); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00009216g0012.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|0.87|0.88|9|479|753; (*GB) gi|224115314|ref|XP_002317001.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAB1|HSP7Q_ARATH (e_value=0.0) Heat shock 70 kDa protein 16 OS=Arabidopsis thaliana GN=HSP70-16 PE=2 SV=1;; (*TAIR) AT1G11660.1 (e_value=0.0) | Symbols: | heat shock protein 70 (Hsp 70) family protein | chr1:3921056-3924347 FORWARD LENGTH=763;; (*ITAG) Solyc02g080470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39251685-39263151 transcript_region:SL2.40ch02:39251685..39263151+ go_terms:GO:0005524 functional_description:"Heat shock protein 4 (AHRD V1 ***- B6U237_MAIZE); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0005524 NbS00030656g0007.1 protein AED:0.19 eAED:0.19 QI:0|0.8|0.63|1|0.7|0.72|11|64|605; (*GB) gi|350539497|ref|NP_001234664.1| (e_value=0.0) mitogen-activated protein kinase 12 [Solanum lycopersicum];; (*SWP) sp|Q5ZCI1|MPK10_ORYSJ (e_value=0.0) Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica GN=MPK10 PE=2 SV=2;; (*TAIR) AT2G42880.1 (e_value=0.0) | Symbols: ATMPK20, MPK20 | MAP kinase 20 | chr2:17840572-17843947 REVERSE LENGTH=606;; (*ITAG) Solyc07g056350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61549395-61555184 transcript_region:SL2.40ch07:61549395..61555184+ go_terms:GO:0008339 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 **** B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008339 NbS00030656g0005.1 protein AED:0.54 eAED:0.55 QI:0|0|0|0.5|1|1|2|0|92; (*GB) gi|350539497|ref|NP_001234664.1| (e_value=1e-38) mitogen-activated protein kinase 12 [Solanum lycopersicum];; (*SWP) sp|Q5ZCI1|MPK10_ORYSJ (e_value=2e-34) Mitogen-activated protein kinase 10 OS=Oryza sativa subsp. japonica GN=MPK10 PE=2 SV=2;; (*TAIR) AT5G19010.1 (e_value=2e-34) | Symbols: MPK16 | mitogen-activated protein kinase 16 | chr5:6345096-6347676 REVERSE LENGTH=567;; (*ITAG) Solyc07g056350.2.1 (e_value=2e-41) genomic_reference:SL2.40ch07 gene_region:61549395-61555184 transcript_region:SL2.40ch07:61549395..61555184+ go_terms:GO:0008339 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 **** B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008339 NbS00015334g0011.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.25|1|0.66|0.5|4|0|346; (*GB) gi|291278198|gb|ADD91580.1| (e_value=0.0) calcium ATPase [Nicotiana benthamiana];; (*SWP) sp|O22218|ACA4_ARATH (e_value=5e-151) Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1;; (*TAIR) AT2G41560.1 (e_value=4e-152) | Symbols: ACA4 | autoinhibited Ca(2+)-ATPase, isoform 4 | chr2:17332256-17337179 REVERSE LENGTH=1030;; (*ITAG) Solyc04g016260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7057222-7066683 transcript_region:SL2.40ch04:7057222..7066683+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00000524g0007.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|42570018|ref|NP_671802.2| (e_value=3e-25) Mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=1e-26) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=7e-28) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc11g028150.1.1 (e_value=8e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17027207-17028188 transcript_region:SL2.40ch11:17027207..17028188+ go_terms:GO:0006508 functional_description:"Uncharacterized mitochondrial protein AtMg01110 (AHRD V1 *-*- M1110_ARATH)"; GO:0006508 NbS00000524g0016.1 protein AED:0.34 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|139; (*ITAG) Solyc00g181250.2.1 (e_value=3e-41) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000524g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|198; (*GB) gi|57013968|ref|YP_173440.1| (e_value=3e-50) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00000524g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.33|1|1|3|0|205; (*GB) gi|57013967|ref|YP_173439.1| (e_value=9e-24) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00000524g0009.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|77 NbS00000524g0023.1 protein AED:0.48 eAED:0.57 QI:0|0|0|0.5|0.6|0.5|6|0|334; (*GB) gi|57013939|ref|YP_173412.1| (e_value=4e-80) cytochrome oxidase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P98012|COX2_BETVU (e_value=3e-75) Cytochrome c oxidase subunit 2 OS=Beta vulgaris GN=COX2 PE=2 SV=1;; (*ITAG) ATMG00160.1 (e_value=4e-73) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc12g039010.1.1 (e_value=3e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:37199046-37202368 transcript_region:SL2.40ch12:37199046..37202368+ go_terms:GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- A8DBV5_CAPAN); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 NbS00000524g0024.1 protein AED:0.31 eAED:0.34 QI:0|0|0|1|0|0|4|0|359; (*GB) gi|57013937|ref|YP_173410.1| (e_value=2e-85) ribosomal protein S3 [Nicotiana tabacum];; (*SWP) sp|Q04716|RT03_PETHY (e_value=2e-85) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00080.1 (e_value=1e-76) | Symbols: RPL16 | ribosomal protein L16 | chrM:25076-25615 REVERSE LENGTH=179;; (*ITAG) Solyc09g015850.2.1 (e_value=2e-87) genomic_reference:SL2.40ch09 gene_region:11297362-11299295 transcript_region:SL2.40ch09:11297362..11299295+ functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 ***- A4KYC6_BALVI)"; NbS00040350g0005.1 protein AED:0.01 eAED:0.03 QI:0|0.5|0.33|1|0.5|0.66|3|182|1169; (*GB) gi|359494335|ref|XP_002267870.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g26540-like [Vitis vinifera];; (*SWP) sp|C0LGR3|Y4265_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1;; (*TAIR) AT5G56040.2 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr5:22695050-22698410 FORWARD LENGTH=1090;; (*ITAG) Solyc07g065860.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64680947-64684651 transcript_region:SL2.40ch07:64680947..64684651+ go_terms:GO:0004674,GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0004674,GO:0001653 NbS00006864g0011.1 protein AED:0.24 eAED:0.25 QI:381|0.69|0.71|1|0.84|0.92|14|0|363; (*GB) gi|357446399|ref|XP_003593477.1| (e_value=3e-147) Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula];; (*TAIR) AT1G11170.1 (e_value=6e-136) | Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438;; (*ITAG) Solyc02g078820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38056053-38061203 transcript_region:SL2.40ch02:38056053..38061203+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00006864g0012.1 protein AED:0.32 eAED:0.32 QI:258|1|1|1|0.83|0.76|13|0|294; (*GB) gi|192910838|gb|ACF06527.1| (e_value=4e-138) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|Q7F613|SCAM2_ORYSJ (e_value=9e-130) Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=3e-128) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc02g078840.2.1 (e_value=1e-172) genomic_reference:SL2.40ch02 gene_region:38066920-38073383 transcript_region:SL2.40ch02:38066920..38073383+ go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00006864g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.33|1|1|3|0|73; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=2e-29) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=1e-29) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=2e-14) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075090.1.1 (e_value=1e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:58125039-58125556 transcript_region:SL2.40ch10:58125039..58125556- go_terms:GO:0005516,GO:0005319 functional_description:"Non-specific lipid-transfer protein (AHRD V1 **** Q4A1N0_SOLLC); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0005516,GO:0005319 NbS00034014g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|3|285|173; (*GB) gi|224120404|ref|XP_002318321.1| (e_value=9e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|D7LD59|CSPLL_ARALL (e_value=5e-17) CASP-like protein ARALYDRAFT_903204 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903204 PE=3 SV=1;; (*TAIR) AT2G39518.1 (e_value=1e-17) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16496029-16496937 REVERSE LENGTH=174;; (*ITAG) Solyc06g072350.2.1 (e_value=5e-89) genomic_reference:SL2.40ch06 gene_region:41013416-41014787 transcript_region:SL2.40ch06:41013416..41014787+ functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00004779g0007.1 protein AED:0.19 eAED:0.19 QI:316|0.87|0.88|1|0.75|0.88|9|186|670; (*GB) gi|225427653|ref|XP_002270680.1| (e_value=0.0) PREDICTED: beta-amylase 8-like [Vitis vinifera];; (*SWP) sp|Q9FH80|BAM8_ARATH (e_value=0.0) Beta-amylase 8 OS=Arabidopsis thaliana GN=BAM8 PE=2 SV=1;; (*TAIR) AT5G45300.2 (e_value=0.0) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=687;; (*ITAG) Solyc08g005780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:604998-612717 transcript_region:SL2.40ch08:604998..612717- go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** B6SVZ0_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00004779g0008.1 protein AED:0.40 eAED:0.66 QI:52|0|0.5|1|0|0|2|0|34 NbS00004779g0006.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|483; (*GB) gi|27085290|gb|AAN85436.1| (e_value=0.0) acyltransferase 2 [Capsicum chinense];; (*SWP) sp|Q8GT20|BEBT_TOBAC (e_value=2e-132) Benzyl alcohol O-benzoyltransferase OS=Nicotiana tabacum GN=HSR201 PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=2e-108) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc05g015800.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:12077217-12079028 transcript_region:SL2.40ch05:12077217..12079028+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00058347g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|514; (*GB) gi|357966935|gb|AET97563.1| (e_value=0.0) galactose oxidase [Ziziphus jujuba];; (*SWP) sp|Q01745|GAOA_GIBZE (e_value=5e-19) Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=1 SV=1;; (*TAIR) AT1G75620.1 (e_value=0.0) | Symbols: | glyoxal oxidase-related protein | chr1:28394951-28396594 REVERSE LENGTH=547;; (*ITAG) Solyc12g089250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62801945-62803657 transcript_region:SL2.40ch12:62801945..62803657+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00002000g0019.1 protein AED:0.18 eAED:0.18 QI:484|1|1|1|0.8|0.68|16|572|1144; (*GB) gi|225432064|ref|XP_002273922.1| (e_value=0.0) PREDICTED: nuclear export mediator factor Nemf-like [Vitis vinifera];; (*SWP) sp|Q8CCP0|NEMF_MOUSE (e_value=2e-175) Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2;; (*TAIR) AT5G49930.1 (e_value=0.0) | Symbols: emb1441 | zinc knuckle (CCHC-type) family protein | chr5:20308260-20312736 REVERSE LENGTH=1080;; (*ITAG) Solyc01g057850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56970792-56983926 transcript_region:SL2.40ch01:56970792..56983926- functional_description:"Serologically defined colon cancer antigen 1 (Fragment) (AHRD V1 *--- C7TZM6_SCHJA); contains Interpro domain(s) IPR008532 Protein of unknown function DUF814 "; NbS00002000g0004.1 protein AED:0.39 eAED:0.40 QI:0|0.4|0.33|1|1|1|6|0|236; (*GB) gi|218552041|gb|ACK99041.1| (e_value=2e-37) hydroxyphenylpyruvate reductase [Salvia officinalis];; (*TAIR) AT1G79870.1 (e_value=6e-33) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:30044794-30045851 FORWARD LENGTH=313;; (*ITAG) Solyc03g120680.2.1 (e_value=2e-63) genomic_reference:SL2.40ch03 gene_region:63041368-63043912 transcript_region:SL2.40ch03:63041368..63043912+ go_terms:GO:0047964 functional_description:"Glyoxylate reductase (AHRD V1 **** B6TL24_MAIZE); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0047964 NbS00002000g0006.1 protein AED:0.47 eAED:0.49 QI:0|0|0|1|1|1|2|0|112 NbS00002000g0001.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.5|1|1|2|0|108 NbS00041611g0005.1 protein AED:0.15 eAED:0.15 QI:10|1|0.8|1|1|1|5|296|203; (*GB) gi|359479327|ref|XP_002272430.2| (e_value=4e-90) PREDICTED: uncharacterized protein LOC100249926 [Vitis vinifera];; (*TAIR) AT1G08220.2 (e_value=5e-74) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mitochondrial proton-transporting ATP synthase complex assembly; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase assembly factor ATP10, mitochondria (InterPro:IPR007849); Has 152 Blast hits to 152 proteins in 76 species: Archae - 6; Bacteria - 0; Metazoa - 2; Fungi - 92; Plants - 30; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr1:2581574-2582850 REVERSE LENGTH=202;; (*ITAG) Solyc11g066610.1.1 (e_value=4e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49460540-49465155 transcript_region:SL2.40ch11:49460540..49465155+ go_terms:GO:0005743 functional_description:"ATP synthase assembly protein Atp10 (Fragment) (AHRD V1 **-- D2W351_NAEGR); contains Interpro domain(s) IPR007849 ATPase assembly factor ATP10, mitochondria "; GO:0005743 NbS00061661g0005.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|0.66|0.75|4|0|132; (*GB) gi|388516951|gb|AFK46537.1| (e_value=5e-57) unknown [Medicago truncatula];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=1e-51) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.2 (e_value=8e-53) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=556;; (*ITAG) Solyc01g110280.2.1 (e_value=2e-71) genomic_reference:SL2.40ch01 gene_region:88754913-88761700 transcript_region:SL2.40ch01:88754913..88761700- go_terms:GO:0016020 functional_description:"DNA-damage-inducible protein F (AHRD V1 **-- B4V9L8_9ACTO); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00061661g0002.1 protein AED:0.42 eAED:0.59 QI:0|0.33|0.28|1|1|1|7|0|161; (*GB) gi|297821327|ref|XP_002878546.1| (e_value=1e-45) hypothetical protein ARALYDRAFT_480999 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=9e-46) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.1 (e_value=7e-47) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=559;; (*ITAG) Solyc01g110280.2.1 (e_value=6e-56) genomic_reference:SL2.40ch01 gene_region:88754913-88761700 transcript_region:SL2.40ch01:88754913..88761700- go_terms:GO:0016020 functional_description:"DNA-damage-inducible protein F (AHRD V1 **-- B4V9L8_9ACTO); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00039213g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|192|203; (*GB) gi|46849531|dbj|BAD17856.1| (e_value=3e-130) gibberellin 2-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q9SQ80|G2OX1_PEA (e_value=3e-93) Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1;; (*TAIR) AT1G78440.1 (e_value=3e-81) | Symbols: ATGA2OX1, GA2OX1 | Arabidopsis thaliana gibberellin 2-oxidase 1 | chr1:29511772-29512990 REVERSE LENGTH=329;; (*ITAG) Solyc07g056670.2.1 (e_value=8e-124) genomic_reference:SL2.40ch07 gene_region:61794905-61796465 transcript_region:SL2.40ch07:61794905..61796465- go_terms:GO:0004062 functional_description:"Gibberellin 2-oxidase 2 (AHRD V1 ***- A0FK57_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0004062 NbS00010499g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|356557503|ref|XP_003547055.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100803179 [Glycine max];; (*SWP) sp|Q6DIP3|RN126_XENTR (e_value=2e-25) RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1;; (*TAIR) AT2G40830.3 (e_value=2e-30) | Symbols: RHC1A | RING-H2 finger C1A | chr2:17043642-17044628 FORWARD LENGTH=328;; (*ITAG) Solyc01g104260.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:84457894-84459005 transcript_region:SL2.40ch01:84457894..84459005- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000389g0002.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|633; (*GB) gi|359483031|ref|XP_002271968.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=3e-175) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=2e-176) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc02g076700.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36416462-36418690 transcript_region:SL2.40ch02:36416462..36418690- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000389g0003.1 protein AED:0.47 eAED:0.47 QI:0|-1|0|1|-1|1|1|0|124; (*GB) gi|225425182|ref|XP_002264325.1| (e_value=6e-29) PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Vitis vinifera];; (*SWP) sp|Q9SIT7|PP151_ARATH (e_value=4e-25) Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1;; (*TAIR) AT2G13600.1 (e_value=3e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697;; (*ITAG) Solyc02g076700.1.1 (e_value=1e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36416462-36418690 transcript_region:SL2.40ch02:36416462..36418690- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000389g0004.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|93 NbS00000389g0010.1 protein AED:0.18 eAED:0.18 QI:61|0.85|0.87|1|1|1|8|301|524; (*GB) gi|47271332|emb|CAG27839.1| (e_value=0.0) calcium-dependent protein kinase 8 [Nicotiana plumbaginifolia];; (*SWP) sp|Q38873|CDPK7_ARATH (e_value=0.0) Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=1 SV=1;; (*TAIR) AT5G12480.1 (e_value=0.0) | Symbols: CPK7 | calmodulin-domain protein kinase 7 | chr5:4047817-4050035 REVERSE LENGTH=535;; (*ITAG) Solyc01g008440.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2523675-2529463 transcript_region:SL2.40ch01:2523675..2529463+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 8 (AHRD V1 **** Q6KC54_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00000389g0013.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|200; (*ITAG) Solyc01g008450.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2537806-2538639 transcript_region:SL2.40ch01:2537806..2538639- functional_description:"Unknown Protein (AHRD V1)"; NbS00000389g0011.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0|2|0|137; (*ITAG) Solyc01g008450.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:2537806-2538639 transcript_region:SL2.40ch01:2537806..2538639- functional_description:"Unknown Protein (AHRD V1)"; NbS00052402g0003.1 protein AED:0.13 eAED:0.13 QI:486|1|0.83|1|1|1|6|0|681; (*GB) gi|225429228|ref|XP_002263457.1| (e_value=0.0) PREDICTED: heat shock 70 kDa protein, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q01899|HSP7M_PHAVU (e_value=0.0) Heat shock 70 kDa protein, mitochondrial OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT5G09590.1 (e_value=0.0) | Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682;; (*ITAG) Solyc01g106210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85918285-85922197 transcript_region:SL2.40ch01:85918285..85922197+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- A2Q199_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00013006g0003.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.25|1|1|4|0|192; (*GB) gi|15227911|ref|NP_181754.1| (e_value=2e-39) cytochrome P450, family 712, subfamily A, polypeptide 1 [Arabidopsis thaliana];; (*SWP) sp|Q9SWR5|C93C1_SOYBN (e_value=9e-31) 2-hydroxyisoflavanone synthase OS=Glycine max GN=IFS2 PE=2 SV=1;; (*TAIR) AT2G42250.1 (e_value=4e-42) | Symbols: CYP712A1 | cytochrome P450, family 712, subfamily A, polypeptide 1 | chr2:17600075-17601709 REVERSE LENGTH=514;; (*ITAG) Solyc10g018150.1.1 (e_value=1e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6690144-6692010 transcript_region:SL2.40ch10:6690144..6692010- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00013006g0001.1 protein AED:0.16 eAED:0.16 QI:143|1|1|1|1|1|4|596|218; (*GB) gi|356543702|ref|XP_003540299.1| (e_value=1e-87) PREDICTED: (+)-pulegone reductase-like [Glycine max];; (*SWP) sp|Q39173|P2_ARATH (e_value=1e-28) NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2;; (*TAIR) AT1G65560.1 (e_value=2e-32) | Symbols: | Zinc-binding dehydrogenase family protein | chr1:24371608-24373673 REVERSE LENGTH=350;; (*ITAG) Solyc07g045080.2.1 (e_value=1e-125) genomic_reference:SL2.40ch07 gene_region:55517820-55520065 transcript_region:SL2.40ch07:55517820..55520065+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* B4RDK4_PHEZH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00035876g0001.1 protein AED:0.00 eAED:0.00 QI:0|0.66|0.75|1|1|1|4|441|338; (*GB) gi|297742185|emb|CBI33972.3| (e_value=7e-89) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G32740.1 (e_value=1e-56) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:11844883-11846082 FORWARD LENGTH=312;; (*ITAG) Solyc06g061020.2.1 (e_value=5e-125) genomic_reference:SL2.40ch06 gene_region:35405402-35407278 transcript_region:SL2.40ch06:35405402..35407278- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- BIRC3_HUMAN); contains Interpro domain(s) IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbC25657263g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.33|0|0.5|1|0.75|4|0|423; (*GB) gi|255583117|ref|XP_002532325.1| (e_value=2e-104) ubiquitin ligase E3 alpha, putative [Ricinus communis];; (*TAIR) AT5G02310.1 (e_value=2e-58) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00010024g0012.1 protein AED:0.22 eAED:0.22 QI:231|0.85|0.75|1|0.85|0.75|8|0|507; (*GB) gi|255573881|ref|XP_002527859.1| (e_value=0.0) Sialin, putative [Ricinus communis];; (*SWP) sp|Q7XJR2|ANTR3_ARATH (e_value=0.0) Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2;; (*TAIR) AT2G38060.1 (e_value=0.0) | Symbols: PHT4;2 | phosphate transporter 4;2 | chr2:15922727-15925623 REVERSE LENGTH=512;; (*ITAG) Solyc09g013150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5552677-5558428 transcript_region:SL2.40ch09:5552677..5558428- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter 3 (AHRD V1 **-* B5AU16_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00010024g0010.1 protein AED:0.14 eAED:0.14 QI:223|0.91|0.92|1|0.75|0.92|13|464|842; (*GB) gi|297740250|emb|CBI30432.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09090.1 (e_value=0.0) | Symbols: DEX1 | defective in exine formation protein (DEX1) | chr3:2782912-2787552 REVERSE LENGTH=896;; (*ITAG) Solyc09g013130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5535592-5544894 transcript_region:SL2.40ch09:5535592..5544894+ go_terms:GO:0005509 functional_description:"Defective in exine formation (AHRD V1 **-- Q9FV30_ARATH); contains Interpro domain(s) IPR013517 FG-GAP "; GO:0005509 NbS00010076g0009.1 protein AED:0.28 eAED:0.32 QI:0|0.4|0.33|1|0.8|0.83|6|0|279; (*GB) gi|120665|sp|P09044.1|G3PB_TOBAC (e_value=5e-121) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic; AltName: Full=NADP-dependent glyceraldehydephosphate dehydrogenase subunit B; Flags: Precursor;; (*SWP) sp|P09044|G3PB_TOBAC (e_value=2e-122) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1;; (*TAIR) AT1G42970.1 (e_value=1e-100) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc12g094640.1.1 (e_value=1e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63152981-63156043 transcript_region:SL2.40ch12:63152981..63156043+ go_terms:GO:0008152,GO:0055114 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 ***- B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00010076g0010.1 protein AED:0.33 eAED:0.33 QI:141|1|0.8|1|1|1|5|0|167; (*GB) gi|225457608|ref|XP_002273917.1| (e_value=1e-55) PREDICTED: uncharacterized protein LOC100242710 [Vitis vinifera];; (*TAIR) AT1G42960.1 (e_value=1e-44) | Symbols: | expressed protein localized to the inner membrane of the chloroplast. | chr1:16125863-16127080 FORWARD LENGTH=168;; (*ITAG) Solyc04g082640.2.1 (e_value=2e-82) genomic_reference:SL2.40ch04 gene_region:63847522-63851069 transcript_region:SL2.40ch04:63847522..63851069- functional_description:"Unknown Protein (AHRD V1)"; NbS00019185g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|1|1|2|0|481; (*GB) gi|255579041|ref|XP_002530371.1| (e_value=0.0) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q93Z08|E136_ARATH (e_value=0.0) Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2;; (*TAIR) AT5G58090.1 (e_value=0.0) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:23505556-23507193 REVERSE LENGTH=477;; (*ITAG) Solyc05g025500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32867544-32874865 transcript_region:SL2.40ch05:32867544..32874865+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00056372g0004.1 protein AED:0.09 eAED:0.09 QI:0|0|0.5|0.5|1|1|2|261|370; (*GB) gi|160346971|gb|ABX26123.1| (e_value=0.0) bypass2 [Nicotiana benthamiana];; (*SWP) sp|Q9LMM6|BPS1_ARATH (e_value=1e-123) Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1;; (*TAIR) AT2G46080.1 (e_value=3e-134) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18948317-18949360 REVERSE LENGTH=347;; (*ITAG) Solyc01g094950.2.1 (e_value=5e-177) genomic_reference:SL2.40ch01 gene_region:78113463-78115886 transcript_region:SL2.40ch01:78113463..78115886+ functional_description:"Protein BPS1, chloroplastic (AHRD V1 **-- BPS1_ARATH)"; NbS00004686g0004.1 protein AED:0.04 eAED:0.06 QI:0|0.6|0.5|1|0.4|0.5|6|0|506; (*GB) gi|255586005|ref|XP_002533672.1| (e_value=0.0) dimethylaniline monooxygenase, putative [Ricinus communis];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=2e-109) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=1e-110) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g007290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2018994-2022658 transcript_region:SL2.40ch07:2018994..2022658+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00038601g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.62|1|1|1|8|0|568; (*GB) gi|225425577|ref|XP_002266600.1| (e_value=0.0) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=8e-92) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G60590.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:22314426-22316867 REVERSE LENGTH=540;; (*ITAG) Solyc05g005170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:159155-162491 transcript_region:SL2.40ch05:159155..162491+ go_terms:GO:0005975 functional_description:"Polygalacturonase 2 (AHRD V1 ***- A8D0T9_ONCHC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00011391g0005.1 protein AED:0.09 eAED:0.10 QI:0|0.2|0|0.66|0.8|0.83|6|0|710; (*GB) gi|255539605|ref|XP_002510867.1| (e_value=2e-100) hypothetical protein RCOM_1497860 [Ricinus communis];; (*TAIR) AT5G62170.1 (e_value=2e-43) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink). | chr5:24973115-24975475 REVERSE LENGTH=703;; (*ITAG) Solyc03g006840.2.1 (e_value=4e-167) genomic_reference:SL2.40ch03 gene_region:1353900-1356748 transcript_region:SL2.40ch03:1353900..1356748+ functional_description:"Genomic DNA chromosome 5 P1 clone MTG10 (AHRD V1 ***- Q9FIS0_ARATH)"; NbS00012355g0005.1 protein AED:0.24 eAED:0.25 QI:229|0.75|0.8|1|0.75|0.6|5|255|325; (*GB) gi|224108095|ref|XP_002314718.1| (e_value=5e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|O43808|PM34_HUMAN (e_value=4e-37) Peroxisomal membrane protein PMP34 OS=Homo sapiens GN=SLC25A17 PE=1 SV=1;; (*TAIR) AT5G27520.1 (e_value=7e-152) | Symbols: PNC2 | peroxisomal adenine nucleotide carrier 2 | chr5:9714664-9716244 REVERSE LENGTH=321;; (*ITAG) Solyc01g079760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71416626-71424710 transcript_region:SL2.40ch01:71416626..71424710+ go_terms:GO:0015217,GO:0005347 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P0Z3_COCP7); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015217,GO:0005347 NbS00044710g0008.1 protein AED:0.09 eAED:0.09 QI:125|1|0.66|1|1|1|3|0|377; (*GB) gi|224078836|ref|XP_002305647.1| (e_value=9e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=5e-70) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=7e-113) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc02g079280.2.1 (e_value=2e-166) genomic_reference:SL2.40ch02 gene_region:38467652-38469093 transcript_region:SL2.40ch02:38467652..38469093+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00044710g0011.1 protein AED:0.36 eAED:0.39 QI:917|0.87|0.77|1|0.62|0.44|9|328|161; (*GB) gi|356554991|ref|XP_003545824.1| (e_value=7e-56) PREDICTED: putative PAP-specific phosphatase, mitochondrial-like [Glycine max];; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=6e-53) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090 PE=2 SV=1;; (*TAIR) AT4G05090.1 (e_value=5e-54) | Symbols: | Inositol monophosphatase family protein | chr4:2609244-2611627 FORWARD LENGTH=397;; (*ITAG) Solyc02g079270.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:38449863-38458570 transcript_region:SL2.40ch02:38449863..38458570+ go_terms:GO:0008441 functional_description:"3&apos(2&apos) 5&apos-bisphosphate nucleotidase-like protein (AHRD V1 **** Q682R6_ARATH); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008441 NbS00061459g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.83|1|1|1|6|0|226; (*GB) gi|359474294|ref|XP_002279852.2| (e_value=3e-88) PREDICTED: uncharacterized protein LOC100258615 [Vitis vinifera];; (*TAIR) AT1G19330.1 (e_value=3e-54) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75060.1); Has 145 Blast hits to 145 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:6680824-6683290 REVERSE LENGTH=247;; (*ITAG) Solyc08g081310.2.1 (e_value=9e-129) genomic_reference:SL2.40ch08 gene_region:61541276-61544893 transcript_region:SL2.40ch08:61541276..61544893- functional_description:"Os10g0358600 protein (Fragment) (AHRD V1 ***- Q0IY80_ORYSJ)"; NbS00031736g0003.1 protein AED:0.06 eAED:0.06 QI:101|1|1|1|1|1|4|277|179; (*GB) gi|225424329|ref|XP_002281081.1| (e_value=2e-72) PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Vitis vinifera];; (*SWP) sp|Q9LQU4|PCR2_ARATH (e_value=4e-65) Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1;; (*TAIR) AT1G14870.1 (e_value=3e-66) | Symbols: PCR2 | PLANT CADMIUM RESISTANCE 2 | chr1:5128591-5129458 REVERSE LENGTH=152;; (*ITAG) Solyc01g005470.2.1 (e_value=8e-99) genomic_reference:SL2.40ch01 gene_region:322628-324932 transcript_region:SL2.40ch01:322628..324932- functional_description:"Cell number regulator 10 (AHRD V1 **-- D9HP26_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00002292g0004.1 protein AED:0.28 eAED:0.28 QI:326|0.4|0.33|0.83|0.6|0.5|6|383|146; (*GB) gi|388511002|gb|AFK43567.1| (e_value=5e-64) unknown [Lotus japonicus];; (*TAIR) AT5G18250.1 (e_value=3e-57) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:6033797-6035216 FORWARD LENGTH=133;; (*ITAG) Solyc08g078630.2.1 (e_value=2e-74) genomic_reference:SL2.40ch08 gene_region:59555779-59561775 transcript_region:SL2.40ch08:59555779..59561775- functional_description:"Unknown Protein (AHRD V1)"; NbS00052648g0003.1 protein AED:0.08 eAED:0.08 QI:157|1|0.5|1|1|1|2|0|204; (*GB) gi|78191436|gb|ABB29939.1| (e_value=3e-110) major intrinsic protein 2-like [Solanum tuberosum];; (*SWP) sp|Q6K215|PIP22_ORYSJ (e_value=2e-99) Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1;; (*TAIR) AT2G37170.1 (e_value=7e-97) | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic protein 2 | chr2:15613624-15614791 REVERSE LENGTH=285;; (*ITAG) Solyc11g069430.1.1 (e_value=1e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51094793-51097463 transcript_region:SL2.40ch11:51094793..51097463- go_terms:GO:0015250 functional_description:"Aquaporin 1 (AHRD V1 ***- Q9M4T0_ALLCE); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00029180g0010.1 protein AED:0.10 eAED:0.10 QI:587|1|1|1|0.33|0.25|4|257|234; (*GB) gi|224126749|ref|XP_002319917.1| (e_value=3e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GZA8|ULT1_ARATH (e_value=1e-123) Protein ULTRAPETALA 1 OS=Arabidopsis thaliana GN=ULT1 PE=1 SV=1;; (*TAIR) AT4G28190.1 (e_value=1e-124) | Symbols: ULT1, ULT | Developmental regulator, ULTRAPETALA | chr4:13985753-13987050 FORWARD LENGTH=237;; (*ITAG) Solyc07g054450.2.1 (e_value=2e-146) genomic_reference:SL2.40ch07 gene_region:60092916-60096795 transcript_region:SL2.40ch07:60092916..60096795+ go_terms:GO:0005634 functional_description:"Transcription factor (Fragment) (AHRD V1 ***- D6MKF6_9ASPA); contains Interpro domain(s) IPR000770 SAND "; GO:0005634 NbS00029180g0009.1 protein AED:0.04 eAED:0.10 QI:0|1|0.33|1|1|1|3|0|730; (*GB) gi|147771901|emb|CAN75706.1| (e_value=3e-98) hypothetical protein VITISV_031419 [Vitis vinifera];; (*SWP) sp|Q96HR8|NAF1_HUMAN (e_value=3e-14) H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2;; (*TAIR) AT1G03530.1 (e_value=8e-73) | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 | chr1:880638-883338 REVERSE LENGTH=801;; (*ITAG) Solyc07g054460.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60098069-60102926 transcript_region:SL2.40ch07:60098069..60102926- functional_description:"H/ACA ribonucleoprotein complex non-core subunit NAF1 (AHRD V1 *-*- NAF1_HUMAN); contains Interpro domain(s) IPR008696 NAF1 "; NbS00059867g0004.1 protein AED:0.04 eAED:0.05 QI:0|0.66|0.25|0.75|0.33|0.25|4|0|198; (*GB) gi|255576895|ref|XP_002529333.1| (e_value=2e-82) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G32580.1 (e_value=2e-71) | Symbols: | Protein of unknown function (DUF1068) | chr2:13827849-13829135 FORWARD LENGTH=183;; (*ITAG) Solyc07g049730.2.1 (e_value=1e-118) genomic_reference:SL2.40ch07 gene_region:57398397-57402361 transcript_region:SL2.40ch07:57398397..57402361- functional_description:"TO62-3 (Fragment) (AHRD V1 *-*- Q3LVL2_TAROF); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00016994g0001.1 protein AED:0.24 eAED:0.24 QI:13|1|0.83|1|1|1|6|0|297; (*GB) gi|257831431|gb|ACV71016.1| (e_value=2e-175) UPA16 [Capsicum annuum];; (*SWP) sp|O82587|SWT12_ARATH (e_value=3e-90) Bidirectional sugar transporter SWEET12 OS=Arabidopsis thaliana GN=SWEET12 PE=2 SV=1;; (*TAIR) AT5G23660.1 (e_value=3e-91) | Symbols: MTN3, SWEET12, AtSWEET12 | homolog of Medicago truncatula MTN3 | chr5:7971936-7973796 REVERSE LENGTH=285;; (*ITAG) Solyc03g097580.2.1 (e_value=8e-179) genomic_reference:SL2.40ch03 gene_region:53354925-53356689 transcript_region:SL2.40ch03:53354925..53356689- go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00061605g0004.1 protein AED:0.29 eAED:0.29 QI:110|0.75|0.6|1|0.75|0.8|5|0|286; (*GB) gi|156739648|gb|ABU93485.1| (e_value=1e-157) xyloglucan endotraglucosylase/hydrolase [Vigna angularis];; (*SWP) sp|Q9SJL9|XTH32_ARATH (e_value=2e-151) Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1;; (*TAIR) AT2G36870.1 (e_value=1e-152) | Symbols: XTH32 | xyloglucan endotransglucosylase/hydrolase 32 | chr2:15472869-15474630 REVERSE LENGTH=299;; (*ITAG) Solyc09g008320.2.1 (e_value=3e-171) genomic_reference:SL2.40ch09 gene_region:1783996-1786766 transcript_region:SL2.40ch09:1783996..1786766+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 12 (AHRD V1 **** C0IRH1_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00005914g0004.1 protein AED:0.05 eAED:0.05 QI:461|1|1|1|1|1|2|251|611; (*GB) gi|225435528|ref|XP_002283014.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265521 [Vitis vinifera];; (*TAIR) AT5G12900.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4072151-4074445 REVERSE LENGTH=562;; (*ITAG) Solyc01g006690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1267165-1270752 transcript_region:SL2.40ch01:1267165..1270752- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00022679g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.9|0.81|1|0.7|0.90|11|103|488; (*GB) gi|71043507|dbj|BAE16174.1| (e_value=0.0) polyamine oxidase [Nicotiana tabacum];; (*SWP) sp|Q9FNA2|PAO1_ARATH (e_value=0.0) Polyamine oxidase 1 OS=Arabidopsis thaliana GN=PAO1 PE=1 SV=1;; (*TAIR) AT5G13700.1 (e_value=0.0) | Symbols: ATPAO1, APAO, PAO1 | polyamine oxidase 1 | chr5:4420222-4422974 REVERSE LENGTH=472;; (*ITAG) Solyc01g087590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74304516-74310120 transcript_region:SL2.40ch01:74304516..74310120+ go_terms:GO:0046592,GO:0050660 functional_description:"Polyamine oxidase (AHRD V1 **** Q4H439_TOBAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0050660 NbS00053050g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.33|0|1|1|1|4|0|222; (*GB) gi|15231558|ref|NP_189274.1| (e_value=7e-61) GDSL esterase/lipase [Arabidopsis thaliana];; (*SWP) sp|Q9LIN2|GDL53_ARATH (e_value=2e-62) GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1;; (*TAIR) AT3G26430.1 (e_value=2e-63) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:9674419-9675889 FORWARD LENGTH=380;; (*ITAG) Solyc05g013680.2.1 (e_value=1e-78) genomic_reference:SL2.40ch05 gene_region:6982588-6984952 transcript_region:SL2.40ch05:6982588..6984952- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At3g26430 (AHRD V1 ***- GDL53_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00053050g0013.1 protein AED:0.38 eAED:0.38 QI:70|0.75|0.8|1|0.5|0.8|5|442|258; (*GB) gi|255582158|ref|XP_002531873.1| (e_value=8e-160) methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|A1BF67|FOLD_CHLPD (e_value=5e-81) Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2;; (*TAIR) AT3G12290.1 (e_value=3e-149) | Symbols: | Amino acid dehydrogenase family protein | chr3:3919591-3921326 FORWARD LENGTH=299;; (*ITAG) Solyc10g080970.1.1 (e_value=1e-168) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61467340-61472069 transcript_region:SL2.40ch10:61467340..61472069+ go_terms:GO:0009396,GO:0008152 functional_description:"FolD bifunctional protein (AHRD V1 ***- B6TJF9_MAIZE); contains Interpro domain(s) IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase "; GO:0009396,GO:0008152 NbS00053050g0003.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|147820325|emb|CAN73573.1| (e_value=1e-16) hypothetical protein VITISV_007446 [Vitis vinifera];; (*TAIR) AT3G10760.1 (e_value=5e-15) | Symbols: | Homeodomain-like superfamily protein | chr3:3369814-3370821 FORWARD LENGTH=335;; (*ITAG) Solyc10g078310.1.1 (e_value=1e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59464367-59465239 transcript_region:SL2.40ch10:59464367..59465239- go_terms:GO:0045449 functional_description:"Two-component response regulator ARR11 (AHRD V1 *--- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00053050g0005.1 protein AED:0.53 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|100; (*ITAG) Solyc10g080960.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61464101-61464901 transcript_region:SL2.40ch10:61464101..61464901+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **-* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00053050g0009.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|1|1|2|0|75; (*GB) gi|30013681|gb|AAP03883.1| (e_value=7e-21) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*ITAG) Solyc06g007190.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00021286g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.4|1|1|0.8|5|0|356; (*GB) gi|388502234|gb|AFK39183.1| (e_value=7e-111) unknown [Lotus japonicus];; (*SWP) sp|O23403|PPD1_ARATH (e_value=1e-103) PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPD1 PE=1 SV=1;; (*TAIR) AT4G15510.1 (e_value=9e-105) | Symbols: | Photosystem II reaction center PsbP family protein | chr4:8860701-8862529 FORWARD LENGTH=287;; (*ITAG) Solyc01g106090.2.1 (e_value=1e-175) genomic_reference:SL2.40ch01 gene_region:85840962-85843969 transcript_region:SL2.40ch01:85840962..85843969+ go_terms:GO:0019898 functional_description:"Photosystem II oxygen evolving complex protein PsbP (AHRD V1 *-*- B8HJK6_CYAP4); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0019898 NbS00021286g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|271; (*GB) gi|224103841|ref|XP_002313215.1| (e_value=4e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18265.1 (e_value=2e-19) | Symbols: | Protein of unknown function, DUF593 | chr1:6282338-6283180 REVERSE LENGTH=280;; (*ITAG) Solyc01g106100.2.1 (e_value=2e-100) genomic_reference:SL2.40ch01 gene_region:85844348-85845751 transcript_region:SL2.40ch01:85844348..85845751- functional_description:"DUF593-containing protein 2 (AHRD V1 ***- B0F6T0_MEDTR); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00009072g0003.1 protein AED:0.30 eAED:0.30 QI:128|1|0.85|1|0.33|0.42|7|287|157; (*GB) gi|225433132|ref|XP_002285184.1| (e_value=3e-66) PREDICTED: chromatin modification-related protein eaf6 [Vitis vinifera];; (*SWP) sp|Q68ER9|EAF6_XENTR (e_value=2e-16) Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1;; (*TAIR) AT4G14385.1 (e_value=4e-47) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8287144-8288622 REVERSE LENGTH=163;; (*ITAG) Solyc09g090120.2.1 (e_value=1e-93) genomic_reference:SL2.40ch09 gene_region:65001524-65006370 transcript_region:SL2.40ch09:65001524..65006370+ functional_description:"Chromatin modification-related protein MEAF6 (AHRD V1 ***- EAF6_CHICK); contains Interpro domain(s) IPR015418 Histone H4 acetyltransferase, NuA4 complex, Eaf6 "; NbS00001295g0001.1 protein AED:0.18 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|224128252|ref|XP_002329118.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR14|Y4317_ARATH (e_value=3e-21) Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana GN=At4g03170 PE=2 SV=1;; (*TAIR) AT4G03170.1 (e_value=2e-22) | Symbols: | AP2/B3-like transcriptional factor family protein | chr4:1400832-1401584 FORWARD LENGTH=250;; (*ITAG) Solyc12g007300.1.1 (e_value=5e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:1699431-1700138 transcript_region:SL2.40ch12:1699431..1700138+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At1g20600 (AHRD V1 *-*- Y1060_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00001295g0011.1 protein AED:0.06 eAED:0.06 QI:210|0.92|0.73|1|0.92|1|15|736|1543; (*GB) gi|225449865|ref|XP_002265477.1| (e_value=0.0) PREDICTED: intron-binding protein aquarius-like [Vitis vinifera];; (*SWP) sp|O60306|AQR_HUMAN (e_value=0.0) Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4;; (*TAIR) AT2G38770.1 (e_value=0.0) | Symbols: EMB2765 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16203185-16210253 REVERSE LENGTH=1509;; (*ITAG) Solyc01g068480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70111269-70125144 transcript_region:SL2.40ch01:70111269..70125144+ functional_description:"Embryo defective 2765 (Fragment) (AHRD V1 *-*- D3U0D1_9MAGN)"; NbS00001295g0012.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0.5|0.33|3|0|796; (*GB) gi|255544043|ref|XP_002513084.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LM76|PUB44_ARATH (e_value=2e-25) U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1;; (*TAIR) AT1G20780.1 (e_value=1e-26) | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated E3 ubiquitin ligase 1 | chr1:7217812-7220609 FORWARD LENGTH=801;; (*ITAG) Solyc01g068490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70128040-70130798 transcript_region:SL2.40ch01:70128040..70130798+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00001295g0007.1 protein AED:0.38 eAED:0.55 QI:0|0|0|0.25|1|1|4|0|155; (*ITAG) Solyc10g085820.1.1 (e_value=6e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64219338-64221096 transcript_region:SL2.40ch10:64219338..64221096- functional_description:"DnaJ-like subfamily C member 28 conserved domain protein (AHRD V1 **-- D7CKU0_SYNLT); contains Interpro domain(s) IPR018961 DnaJ homologue, subfamily C, member 28 "; NbC26186655g0003.1 protein AED:0.36 eAED:0.36 QI:103|0.66|0.75|1|0|0|4|441|225; (*GB) gi|225429191|ref|XP_002276036.1| (e_value=7e-43) PREDICTED: uncharacterized protein LOC100251465 [Vitis vinifera];; (*TAIR) AT4G33780.1 (e_value=6e-39) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16202174-16203617 REVERSE LENGTH=203;; (*ITAG) Solyc01g106810.2.1 (e_value=7e-82) genomic_reference:SL2.40ch01 gene_region:86327276-86330864 transcript_region:SL2.40ch01:86327276..86330864- functional_description:"Unknown Protein (AHRD V1)"; NbS00009207g0004.1 protein AED:0.09 eAED:0.09 QI:108|1|1|1|0.4|0.5|6|2354|354; (*GB) gi|296089931|emb|CBI39750.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55860.1 (e_value=6e-15) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc05g014130.2.1 (e_value=7e-13) genomic_reference:SL2.40ch05 gene_region:7825077-7831106 transcript_region:SL2.40ch05:7825077..7831106- functional_description:"COP1-interacting protein 4 (AHRD V1 *--- Q9C5U5_ARATH)"; NbS00009207g0011.1 protein AED:0.30 eAED:0.30 QI:287|1|1|1|1|1|6|305|296; (*GB) gi|225441246|ref|XP_002273524.1| (e_value=3e-144) PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Vitis vinifera];; (*SWP) sp|Q5HZL9|HDHD3_XENLA (e_value=3e-17) Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Xenopus laevis GN=hdhd3 PE=2 SV=1;; (*TAIR) AT2G41250.1 (e_value=2e-127) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:17200862-17202551 REVERSE LENGTH=290;; (*ITAG) Solyc10g079620.1.1 (e_value=2e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60451878-60454471 transcript_region:SL2.40ch10:60451878..60454471+ go_terms:GO:0008152 functional_description:"HAD superfamily (Subfamily IA) hydrolase TIGR02254 (AHRD V1 **-- D2C4L5_THENR); contains Interpro domain(s) IPR011949 HAD-superfamily hydrolase, subfamily IA, REG-2-like "; GO:0008152 NbS00009207g0007.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|1|1|2|0|142 NbS00009207g0017.1 protein AED:0.36 eAED:0.51 QI:0|0|0|1|0|0.25|4|0|293; (*GB) gi|38426422|gb|AAR20311.1| (e_value=9e-133) maturase [Nicotiana sylvestris];; (*ITAG) ATMG00520.1 (e_value=1e-117) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=5e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00009207g0015.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|0|0|5|0|388; (*GB) gi|57013880|ref|YP_173354.1| (e_value=3e-80) maturase-related protein [Nicotiana tabacum];; (*ITAG) ATMG00520.1 (e_value=4e-63) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672;; (*ITAG) Solyc11g056270.1.1 (e_value=3e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43075076-43078758 transcript_region:SL2.40ch11:43075076..43078758+ functional_description:"Maturase (Fragment) (AHRD V1 ***- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00026232g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|115 NbS00015426g0008.1 protein AED:0.12 eAED:0.13 QI:125|0.8|0.81|1|0.6|0.54|11|564|433; (*GB) gi|359495929|ref|XP_002272151.2| (e_value=2e-166) PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera];; (*TAIR) AT2G43465.1 (e_value=7e-119) | Symbols: | RNA-binding ASCH domain protein | chr2:18047732-18049709 REVERSE LENGTH=388;; (*ITAG) Solyc06g073130.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00015426g0001.1 protein AED:0.18 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|247; (*GB) gi|225426777|ref|XP_002282782.1| (e_value=1e-97) PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis vinifera];; (*SWP) sp|Q3UFY0|RRP36_MOUSE (e_value=2e-34) Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=2 SV=1;; (*TAIR) AT1G12650.4 (e_value=1e-62) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=1e-123) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00015426g0011.1 protein AED:0.18 eAED:0.30 QI:0|0.75|0.44|1|0|0.11|9|0|355; (*GB) gi|296081345|emb|CBI17691.3| (e_value=2e-67) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67550.1 (e_value=6e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26946908-26949112 REVERSE LENGTH=509;; (*ITAG) Solyc06g073140.1.1 (e_value=1e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41449237-41452400 transcript_region:SL2.40ch06:41449237..41452400- functional_description:"Unknown Protein (AHRD V1)"; NbS00007075g0019.1 protein AED:0.04 eAED:0.04 QI:173|1|1|1|1|1|4|481|462; (*GB) gi|225458301|ref|XP_002282736.1| (e_value=0.0) PREDICTED: glucan endo-1,3-beta-glucosidase 7 [Vitis vinifera];; (*SWP) sp|Q9M069|E137_ARATH (e_value=2e-167) Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2;; (*TAIR) AT2G16230.1 (e_value=2e-174) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:7035463-7038326 REVERSE LENGTH=503;; (*ITAG) Solyc04g080260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62091008-62094221 transcript_region:SL2.40ch04:62091008..62094221- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T289_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00007075g0018.1 protein AED:0.09 eAED:0.09 QI:17|1|0.6|1|1|1|5|135|1056; (*GB) gi|224065587|ref|XP_002301871.1| (e_value=5e-159) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42710.1 (e_value=2e-37) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17125578-17128696 FORWARD LENGTH=807;; (*ITAG) Solyc04g080270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62098225-62103204 transcript_region:SL2.40ch04:62098225..62103204- functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *-*- Q9FMZ3_ARATH)"; NbS00007075g0020.1 protein AED:0.22 eAED:0.22 QI:0|0.2|0|0.90|0.4|0.36|11|0|1407; (*GB) gi|255555253|ref|XP_002518663.1| (e_value=0.0) U520, putative [Ricinus communis];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00056014g0001.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|122; (*GB) gi|76160976|gb|ABA40451.1| (e_value=5e-76) unknown [Solanum tuberosum];; (*TAIR) AT4G26210.2 (e_value=2e-70) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:13282370-13283118 FORWARD LENGTH=122;; (*ITAG) Solyc07g026770.2.1 (e_value=8e-79) genomic_reference:SL2.40ch07 gene_region:31132623-31137555 transcript_region:SL2.40ch07:31132623..31137555- go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- D7MFB8_ARALY); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00023733g0003.1 protein AED:0.02 eAED:0.02 QI:41|1|1|1|0|0.5|2|211|150; (*GB) gi|311893243|dbj|BAJ25791.1| (e_value=3e-60) similar to T-phylloplanin [Nicotiana tabacum];; (*SWP) sp|Q56S59|PHYLL_TOBAC (e_value=1e-51) Phylloplanin OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT3G16670.1 (e_value=2e-20) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr3:5681500-5682111 FORWARD LENGTH=154;; (*ITAG) Solyc01g066680.2.1 (e_value=8e-45) genomic_reference:SL2.40ch01 gene_region:67240189-67241345 transcript_region:SL2.40ch01:67240189..67241345- functional_description:"Phylloplanin (AHRD V1 *-*- Q1PCF2_TOBAC)"; NbS00028373g0016.1 protein AED:0.20 eAED:0.31 QI:58|0|0|1|0|0.25|4|0|193; (*ITAG) Solyc01g094420.2.1 (e_value=5e-27) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00028373g0017.1 protein AED:0.35 eAED:0.37 QI:226|0.90|0.91|1|0.54|0.5|12|0|467; (*GB) gi|224061655|ref|XP_002300588.1| (e_value=0.0) actin related protein [Populus trichocarpa];; (*SWP) sp|Q9FKT0|ARP8_ARATH (e_value=0.0) Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1;; (*TAIR) AT5G56180.1 (e_value=0.0) | Symbols: ATARP8, ARP8 | actin-related protein 8 | chr5:22737539-22740986 REVERSE LENGTH=471;; (*ITAG) Solyc07g066120.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64850561-64856883 transcript_region:SL2.40ch07:64850561..64856883- go_terms:GO:0005200 functional_description:"Actin-6 (AHRD V1 ***- A8WB03_ORYRU); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0005200 NbS00028373g0015.1 protein AED:0.79 eAED:0.80 QI:0|0|0|0.5|1|1|2|0|114 NbS00028373g0006.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|497; (*GB) gi|147816693|emb|CAN62262.1| (e_value=1e-180) hypothetical protein VITISV_013985 [Vitis vinifera];; (*SWP) sp|Q9FI80|PP425_ARATH (e_value=3e-91) Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1;; (*TAIR) AT5G48910.1 (e_value=2e-92) | Symbols: LPA66 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19832969-19834909 REVERSE LENGTH=646;; (*ITAG) Solyc07g066110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64848778-64850361 transcript_region:SL2.40ch07:64848778..64850361+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00028373g0014.1 protein AED:0.31 eAED:0.31 QI:254|1|1|1|0|0|2|166|165; (*GB) gi|124484379|dbj|BAF46300.1| (e_value=1e-58) GPI-anchored protein [Ipomoea nil];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=3e-39) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT5G56170.1 (e_value=1e-50) | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | chr5:22736072-22737108 FORWARD LENGTH=168;; (*ITAG) Solyc07g066100.2.1 (e_value=4e-73) genomic_reference:SL2.40ch07 gene_region:64845601-64848293 transcript_region:SL2.40ch07:64845601..64848293+ functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00004649g0001.1 protein AED:0.06 eAED:0.09 QI:0|0.66|0.28|1|1|1|7|0|630; (*GB) gi|147774753|emb|CAN63760.1| (e_value=0.0) hypothetical protein VITISV_008633 [Vitis vinifera];; (*SWP) sp|Q8LSN2|BBM2_BRANA (e_value=2e-107) AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1;; (*TAIR) AT3G20840.1 (e_value=3e-96) | Symbols: PLT1 | Integrase-type DNA-binding superfamily protein | chr3:7300764-7303370 FORWARD LENGTH=574;; (*ITAG) Solyc11g008560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2751173-2756165 transcript_region:SL2.40ch11:2751173..2756165+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00004649g0118.1 protein AED:0.06 eAED:0.06 QI:0|0.83|0.57|0.85|0.83|0.85|7|0|361 NbS00004649g0103.1 protein AED:0.07 eAED:0.09 QI:0|0|0|0.9|1|1|10|0|798 NbS00004649g0108.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|0.5|1|1|2|0|74 NbS00004649g0121.1 protein AED:0.15 eAED:0.15 QI:14|0.85|0.5|1|1|0.87|8|0|535 NbS00006100g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|82400118|gb|ABB72798.1| (e_value=2e-81) 40S ribosomal protein S4-like protein [Solanum tuberosum];; (*SWP) sp|P46300|RS4_SOLTU (e_value=6e-83) 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1;; (*TAIR) AT5G58420.1 (e_value=2e-81) | Symbols: | Ribosomal protein S4 (RPS4A) family protein | chr5:23619599-23620896 FORWARD LENGTH=262;; (*ITAG) Solyc02g070360.2.1 (e_value=5e-85) genomic_reference:SL2.40ch02 gene_region:34691346-34693734 transcript_region:SL2.40ch02:34691346..34693734+ go_terms:GO:0032183,GO:0003735 functional_description:"40S ribosomal protein S4-like protein (AHRD V1 ***- Q2XPX5_SOLTU); contains Interpro domain(s) IPR000876 Ribosomal protein S4e "; GO:0032183,GO:0003735 NbS00006100g0006.1 protein AED:0.81 eAED:0.81 QI:0|0|0|0.25|1|1|4|0|99 NbS00019500g0004.1 protein AED:0.01 eAED:0.04 QI:0|0|0|1|0|0|2|0|665; (*GB) gi|350540658|ref|NP_001234831.1| (e_value=4e-91) TCP transcription factor 11 [Solanum lycopersicum];; (*SWP) sp|Q9C518|TCP8_ARATH (e_value=2e-45) Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1;; (*TAIR) AT1G58100.1 (e_value=1e-46) | Symbols: | TCP family transcription factor | chr1:21512680-21513885 REVERSE LENGTH=401;; (*ITAG) Solyc01g103780.2.1 (e_value=9e-74) genomic_reference:SL2.40ch01 gene_region:84064508-84066135 transcript_region:SL2.40ch01:84064508..84066135- go_terms:GO:0003700 functional_description:"TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00043783g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.85|0.62|1|0.85|0.87|8|0|637; (*GB) gi|359481917|ref|XP_002267007.2| (e_value=0.0) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 4, partial [Vitis vinifera];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=0.0) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=0.0) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc12g019880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:12065920-12068792 transcript_region:SL2.40ch12:12065920..12068792- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00043783g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|160; (*GB) gi|356500325|ref|XP_003518983.1| (e_value=3e-67) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 4-like [Glycine max];; (*SWP) sp|Q9M1K2|PI5K4_ARATH (e_value=5e-66) Phosphatidylinositol 4-phosphate 5-kinase 4 OS=Arabidopsis thaliana GN=PIP5K4 PE=1 SV=1;; (*TAIR) AT3G56960.1 (e_value=4e-67) | Symbols: PIP5K4 | phosphatidyl inositol monophosphate 5 kinase 4 | chr3:21080957-21083885 FORWARD LENGTH=779;; (*ITAG) Solyc12g019880.1.1 (e_value=3e-102) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:12065920-12068792 transcript_region:SL2.40ch12:12065920..12068792- go_terms:GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308 NbS00033836g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0|0|2|0|156; (*GB) gi|357471215|ref|XP_003605892.1| (e_value=9e-54) Transmembrane protein [Medicago truncatula];; (*TAIR) AT2G32380.1 (e_value=2e-51) | Symbols: | Transmembrane protein 97, predicted | chr2:13746792-13747730 REVERSE LENGTH=168;; (*ITAG) Solyc07g052430.2.1 (e_value=1e-79) genomic_reference:SL2.40ch07 gene_region:58261778-58264731 transcript_region:SL2.40ch07:58261778..58264731+ functional_description:"Transmembrane protein 97 (AHRD V1 *-*- TMM97_HUMAN); contains Interpro domain(s) IPR016964 Transmembrane protein 97, predicted "; NbS00023052g0010.1 protein AED:0.25 eAED:0.26 QI:0|0.5|0.2|1|0.5|0.4|5|0|401; (*GB) gi|297736473|emb|CBI25344.3| (e_value=3e-159) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q1JPN0|STR7_ARATH (e_value=5e-87) Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana GN=STR7 PE=2 SV=1;; (*TAIR) AT2G40760.1 (e_value=4e-88) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:17010050-17011968 FORWARD LENGTH=474;; (*ITAG) Solyc03g095760.2.1 (e_value=1e-134) genomic_reference:SL2.40ch03 gene_region:50400770-50406711 transcript_region:SL2.40ch03:50400770..50406711- functional_description:"Rhodanese domain protein (AHRD V1 *--- A1VNM1_POLNA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00023052g0011.1 protein AED:0.24 eAED:0.41 QI:173|0|0.4|1|0.5|0.8|5|467|140; (*GB) gi|1351365|sp|P48505.2|UCR11_SOLTU (e_value=3e-15) RecName: Full=Ubiquinol-cytochrome c reductase complex 6.7 kDa protein; Short=CR6;; (*SWP) sp|P48505|UCR11_SOLTU (e_value=9e-17) Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2;; (*ITAG) Solyc03g095730.2.1 (e_value=2e-12) genomic_reference:SL2.40ch03 gene_region:50349408-50352048 transcript_region:SL2.40ch03:50349408..50352048- functional_description:"Ubiquinol-cytochrome c reductase complex protein (AHRD V1 ***- B6T3C5_MAIZE)"; NbS00023052g0012.1 protein AED:0.40 eAED:0.57 QI:0|0|0|1|0|0|2|0|103; (*ITAG) Solyc01g017760.1.1 (e_value=1e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040562g0003.1 protein AED:0.42 eAED:0.78 QI:0|1|0|1|0|0|2|0|146 NbS00016010g0009.1 protein AED:0.18 eAED:0.18 QI:166|1|1|1|0.91|0.84|13|342|493; (*GB) gi|224059678|ref|XP_002299966.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G26770.2 (e_value=0.0) | Symbols: | plectin-related | chr2:11404257-11407743 REVERSE LENGTH=496;; (*ITAG) Solyc10g078340.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59482438-59487279 transcript_region:SL2.40ch10:59482438..59487279- functional_description:"Os03g0364500 protein (Fragment) (AHRD V1 *-*- Q0DRQ2_ORYSJ)"; NbS00016010g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|1|1|1|4|510|631; (*GB) gi|225450923|ref|XP_002280699.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259697 [Vitis vinifera];; (*TAIR) AT5G12260.1 (e_value=0.0) | Symbols: | BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3966417-3968684 FORWARD LENGTH=624;; (*ITAG) Solyc11g062360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46404974-46410373 transcript_region:SL2.40ch11:46404974..46410373- functional_description:"Sugar transporter superfamily (AHRD V1 **-- A4Q7Q3_MEDTR)"; NbS00053797g0004.1 protein AED:0.26 eAED:0.27 QI:0|1|0|1|1|0.5|2|0|593; (*GB) gi|18076679|emb|CAC84774.1| (e_value=0.0) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=2e-120) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=2e-121) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc10g084290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63229724-63232951 transcript_region:SL2.40ch10:63229724..63232951+ functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00047959g0003.1 protein AED:0.11 eAED:0.13 QI:290|0.69|0.71|0.85|0.84|0.78|14|49|1379; (*GB) gi|359488087|ref|XP_002266063.2| (e_value=0.0) PREDICTED: probable lysine-specific demethylase JMJ14-like [Vitis vinifera];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=0.0) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G08620.2 (e_value=0.0) | Symbols: PKDM7D | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:2737554-2743370 FORWARD LENGTH=1209;; (*ITAG) Solyc04g009990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3303089-3310711 transcript_region:SL2.40ch04:3303089..3310711- go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00007927g0001.1 protein AED:0.00 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|283; (*GB) gi|255555977|ref|XP_002519023.1| (e_value=4e-52) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q8LDR0|DOF54_ARATH (e_value=7e-25) Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2;; (*TAIR) AT5G60850.1 (e_value=5e-26) | Symbols: OBP4 | OBF binding protein 4 | chr5:24480578-24481501 FORWARD LENGTH=307;; (*ITAG) Solyc02g078620.1.1 (e_value=2e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37850777-37851631 transcript_region:SL2.40ch02:37850777..37851631+ go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00007927g0006.1 protein AED:0.06 eAED:0.06 QI:121|1|1|1|1|1|3|415|182; (*GB) gi|225470369|ref|XP_002271088.1| (e_value=8e-76) PREDICTED: uncharacterized protein LOC100263752 [Vitis vinifera];; (*TAIR) AT1G61065.1 (e_value=7e-71) | Symbols: | Protein of unknown function (DUF1218) | chr1:22490430-22491330 REVERSE LENGTH=180;; (*ITAG) Solyc02g078630.2.1 (e_value=8e-107) genomic_reference:SL2.40ch02 gene_region:37852944-37856341 transcript_region:SL2.40ch02:37852944..37856341- functional_description:"Os10g0495900 protein (Fragment) (AHRD V1 *-*- Q0IWP8_ORYSJ); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; NbS00032931g0006.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|2|0|102; (*GB) gi|225430619|ref|XP_002266736.1| (e_value=3e-60) PREDICTED: 40S ribosomal protein S5 isoform 1 [Vitis vinifera];; (*SWP) sp|O65731|RS5_CICAR (e_value=2e-60) 40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1;; (*TAIR) AT2G37270.2 (e_value=2e-59) | Symbols: ATRPS5B, RPS5B | ribosomal protein 5B | chr2:15647883-15649042 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=9e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00032931g0007.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|60; (*GB) gi|40748265|gb|AAR89617.1| (e_value=1e-24) 40S ribosomal protein S5 [Capsicum annuum];; (*SWP) sp|P51427|RS52_ARATH (e_value=4e-15) 40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2;; (*TAIR) AT3G11940.2 (e_value=3e-16) | Symbols: ATRPS5A, AML1, RPS5A | ribosomal protein 5A | chr3:3778175-3779354 REVERSE LENGTH=207;; (*ITAG) Solyc10g078620.1.1 (e_value=1e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59701774-59703879 transcript_region:SL2.40ch10:59701774..59703879- go_terms:GO:0003735 functional_description:"Ribosomal protein S5 (AHRD V1 ***- A8J2I5_CHLRE); contains Interpro domain(s) IPR005716 Ribosomal protein S7, eukaryotic/archaeal "; GO:0003735 NbS00008278g0001.1 protein AED:0.01 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|272; (*GB) gi|224126225|ref|XP_002329621.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LRW1|LBD22_ARATH (e_value=7e-32) LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1;; (*TAIR) AT3G13850.1 (e_value=5e-33) | Symbols: LBD22 | LOB domain-containing protein 22 | chr3:4559910-4560716 FORWARD LENGTH=268;; (*ITAG) Solyc08g065130.1.1 (e_value=4e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:50007755-50008788 transcript_region:SL2.40ch08:50007755..50008788+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00018749g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|131167|sp|P29302.1|PSAD_NICSY (e_value=6e-131) RecName: Full=Photosystem I reaction center subunit II, chloroplastic; AltName: Full=Photosystem I 20 kDa subunit; Short=PSI-D; Flags: Precursor;; (*SWP) sp|P29302|PSAD_NICSY (e_value=2e-132) Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1;; (*TAIR) AT1G03130.1 (e_value=4e-102) | Symbols: PSAD-2 | photosystem I subunit D-2 | chr1:753528-754142 REVERSE LENGTH=204;; (*ITAG) Solyc06g054260.1.1 (e_value=1e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33565231-33565857 transcript_region:SL2.40ch06:33565231..33565857- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit II (AHRD V1 ***- B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD "; GO:0009538 NbS00002749g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|0|0.5|2|0|320; (*GB) gi|359489390|ref|XP_003633918.1| (e_value=8e-149) PREDICTED: probable carboxylesterase 9-like [Vitis vinifera];; (*SWP) sp|O64641|CXE9_ARATH (e_value=4e-126) Probable carboxylesterase 9 OS=Arabidopsis thaliana GN=CXE9 PE=2 SV=1;; (*TAIR) AT2G45610.1 (e_value=3e-127) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18791463-18792437 FORWARD LENGTH=324;; (*ITAG) Solyc01g091410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76798424-76800244 transcript_region:SL2.40ch01:76798424..76800244- go_terms:GO:0004091 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOLC); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00002749g0003.1 protein AED:0.17 eAED:0.17 QI:401|0|1|1|0|0.5|2|0|82 NbS00002749g0123.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|161 NbS00002749g0121.1 protein AED:0.17 eAED:0.20 QI:265|0.81|0.83|1|0.90|0.83|12|0|655 NbS00002749g0113.1 protein AED:0.23 eAED:0.23 QI:270|0.8|0.66|1|0.8|0.66|6|188|336 NbS00002749g0109.1 protein AED:0.61 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|133 NbS00002749g0124.1 protein AED:0.12 eAED:0.22 QI:0|0|0|1|0|0|2|0|764 NbS00010389g0005.1 protein AED:0.03 eAED:0.03 QI:358|0.8|0.83|1|1|1|6|271|205; (*GB) gi|225431990|ref|XP_002279153.1| (e_value=2e-93) PREDICTED: DNA replication complex GINS protein SLD5 [Vitis vinifera];; (*SWP) sp|Q99LZ3|SLD5_MOUSE (e_value=1e-19) DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4 PE=1 SV=1;; (*TAIR) AT5G49010.1 (e_value=6e-78) | Symbols: SLD5 | DNA replication protein-related | chr5:19866464-19868074 FORWARD LENGTH=220;; (*ITAG) Solyc11g065900.1.1 (e_value=3e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48571923-48574271 transcript_region:SL2.40ch11:48571923..48574271+ functional_description:"DNA replication complex GINS protein SLD5 (AHRD V1 ***- B5XGA0_SALSA); contains Interpro domain(s) IPR008591 GINS complex, Sld5 component "; NbS00033512g0004.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|0|0|4|0|171; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=7e-44) hypothetical protein [Nicotiana tabacum]; NbS00015613g0007.1 protein AED:0.09 eAED:0.09 QI:283|1|1|1|0.92|0.92|26|529|1023; (*GB) gi|359492582|ref|XP_002282968.2| (e_value=0.0) PREDICTED: chromosome-associated kinesin KIF4A-like [Vitis vinifera];; (*SWP) sp|Q91784|KIF4_XENLA (e_value=7e-111) Chromosome-associated kinesin KIF4 OS=Xenopus laevis GN=kif4 PE=2 SV=1;; (*TAIR) AT5G47820.2 (e_value=0.0) | Symbols: FRA1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:19366505-19372229 FORWARD LENGTH=1035;; (*ITAG) Solyc04g078610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:60877592-60888302 transcript_region:SL2.40ch04:60877592..60888302- go_terms:GO:0008574,GO:0008017 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8GS71_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0008017 NbS00015613g0005.1 protein AED:0.37 eAED:0.37 QI:21|-1|0|1|-1|1|1|0|60 NbS00013384g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.87|1|0.85|0.87|8|0|549; (*GB) gi|224072801|ref|XP_002303888.1| (e_value=0.0) AP2 domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q5YGP7|PLET2_ARATH (e_value=0.0) AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1;; (*TAIR) AT1G51190.1 (e_value=0.0) | Symbols: PLT2 | Integrase-type DNA-binding superfamily protein | chr1:18977517-18980305 FORWARD LENGTH=568;; (*ITAG) Solyc11g061750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45463808-45467453 transcript_region:SL2.40ch11:45463808..45467453+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00038272g0003.1 protein AED:0.07 eAED:0.08 QI:302|1|0.66|1|0.6|0.5|6|0|629; (*ITAG) Solyc05g011830.2.1 (e_value=6e-103) genomic_reference:SL2.40ch05 gene_region:5061298-5063494 transcript_region:SL2.40ch05:5061298..5063494- functional_description:"Unknown Protein (AHRD V1)"; NbS00020047g0002.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.4|0.8|0.75|0.6|5|1483|646; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=2e-148) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3Z7|R1B14_SOLDE (e_value=3e-68) Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=2e-46) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc04g007030.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:742844-747712 transcript_region:SL2.40ch04:742844..747712- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00020047g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.75|0.8|1|0.75|0.8|5|349|344; (*GB) gi|225423935|ref|XP_002279027.1| (e_value=3e-141) PREDICTED: uncharacterized protein LOC100262750 [Vitis vinifera];; (*TAIR) AT3G25805.1 (e_value=4e-136) | Symbols: | unknown protein; Has 98 Blast hits to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:9426354-9428169 REVERSE LENGTH=335;; (*ITAG) Solyc04g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:822842-826214 transcript_region:SL2.40ch04:822842..826214- functional_description:"Genomic DNA chromosome 3 TAC clone K13N2 (AHRD V1 *-*- Q9LRZ8_ARATH)"; NbS00027551g0008.1 protein AED:0.09 eAED:0.10 QI:319|0.53|0.48|1|0.84|0.81|27|401|2351; (*GB) gi|359482368|ref|XP_003632762.1| (e_value=0.0) PREDICTED: pre-mRNA-processing-splicing factor 8-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=0.0) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=0.0) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00027551g0005.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|87; (*TAIR) AT3G18780.1 (e_value=2e-14) | Symbols: ACT2, DER1, LSR2, ENL2 | actin 2 | chr3:6475535-6476728 FORWARD LENGTH=371; NbS00027551g0002.1 protein AED:0.04 eAED:0.04 QI:328|1|0.75|1|0|0.25|4|695|590; (*GB) gi|225470674|ref|XP_002269391.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera];; (*SWP) sp|Q9SMZ2|PP347_ARATH (e_value=2e-116) Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1;; (*TAIR) AT4G33170.1 (e_value=1e-117) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15995701-15998673 REVERSE LENGTH=990;; (*ITAG) Solyc07g008890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3860404-3862176 transcript_region:SL2.40ch07:3860404..3862176- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00015709g0007.1 protein AED:0.37 eAED:0.37 QI:0|1|0|1|1|1|2|0|112; (*GB) gi|40287540|gb|AAR83884.1| (e_value=1e-70) ly200 protein [Capsicum annuum];; (*SWP) sp|P49211|RL321_ARATH (e_value=1e-67) 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2;; (*TAIR) AT4G18100.1 (e_value=9e-69) | Symbols: | Ribosomal protein L32e | chr4:10035715-10036475 REVERSE LENGTH=133;; (*ITAG) Solyc02g070310.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:34670896-34672676 transcript_region:SL2.40ch02:34670896..34672676- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L32 (AHRD V1 ***- Q45NI6_MEDSA); contains Interpro domain(s) IPR018263 Ribosomal protein L32e, conserved site IPR001515 Ribosomal protein L32e "; GO:0003735,GO:0005515 NbS00015709g0006.1 protein AED:0.69 eAED:1.00 QI:42|0|0|0.5|0|0|2|96|45 NbS00040434g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.4|1|0.75|1|5|0|209; (*GB) gi|297737452|emb|CBI26653.3| (e_value=1e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|B8CZC3|LPXK_HALOH (e_value=2e-12) Tetraacyldisaccharide 4'-kinase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=lpxK PE=3 SV=1;; (*TAIR) AT3G20480.1 (e_value=2e-60) | Symbols: | tetraacyldisaccharide 4'-kinase family protein | chr3:7151497-7153369 REVERSE LENGTH=395;; (*ITAG) Solyc07g064710.2.1 (e_value=3e-119) genomic_reference:SL2.40ch07 gene_region:63967340-63971297 transcript_region:SL2.40ch07:63967340..63971297+ go_terms:GO:0009245 functional_description:"Tetraacyldisaccharide 4&apos-kinase family protein (AHRD V1 ***- D7LB04_ARALY); contains Interpro domain(s) IPR003758 Tetraacyldisaccharide-1-P 4'-kinase "; GO:0009245 NbS00014270g0010.1 protein AED:0.39 eAED:0.39 QI:0|1|0|1|0|0.5|2|0|103; (*GB) gi|255578825|ref|XP_002530267.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G64180.1 (e_value=5e-28) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25677163-25678204 FORWARD LENGTH=158;; (*ITAG) Solyc01g105130.2.1 (e_value=6e-44) genomic_reference:SL2.40ch01 gene_region:85162028-85165518 transcript_region:SL2.40ch01:85162028..85165518+ functional_description:"SKIP interacting protein 15 (AHRD V1 ***- B8Q8A1_ORYSI)"; NbS00014270g0007.1 protein AED:0.32 eAED:0.32 QI:0|0.87|0.77|1|0.75|0.77|9|771|289; (*GB) gi|255581357|ref|XP_002531488.1| (e_value=3e-65) serine/arginine rich splicing factor, putative [Ricinus communis];; (*SWP) sp|P30352|SRSF2_CHICK (e_value=5e-25) Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1;; (*TAIR) AT5G64200.2 (e_value=2e-65) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc01g105140.2.1 (e_value=8e-71) genomic_reference:SL2.40ch01 gene_region:85168075-85173892 transcript_region:SL2.40ch01:85168075..85173892- go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00051227g0005.1 protein AED:0.09 eAED:0.09 QI:291|1|1|1|1|1|5|251|211; (*GB) gi|225460789|ref|XP_002274964.1| (e_value=3e-81) PREDICTED: uncharacterized protein LOC100248615 [Vitis vinifera];; (*TAIR) AT5G55510.1 (e_value=2e-71) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:22486525-22487916 REVERSE LENGTH=214;; (*ITAG) Solyc07g065200.2.1 (e_value=1e-110) genomic_reference:SL2.40ch07 gene_region:64285465-64288692 transcript_region:SL2.40ch07:64285465..64288692- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit tim22 (AHRD V1 *-*- B6U2A3_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015450 NbS00011811g0001.1 protein AED:0.33 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|255574494|ref|XP_002528159.1| (e_value=8e-26) Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis];; (*TAIR) AT2G34980.1 (e_value=1e-24) | Symbols: SETH1 | phosphatidylinositolglycan synthase family protein | chr2:14748967-14749878 FORWARD LENGTH=303;; (*ITAG) Solyc02g081610.1.1 (e_value=1e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40073643-40074554 transcript_region:SL2.40ch02:40073643..40074554- go_terms:GO:0016740 functional_description:"Phosphatidylinositol UDP-GlcNAc transferase PIG-C (AHRD V1 *-** Q6Q2B3_ASPFU); contains Interpro domain(s) IPR009450 Phosphatidylinositol N-acetylglucosaminyltransferase "; GO:0016740 NbS00011811g0003.1 protein AED:0.46 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|79; (*ITAG) Solyc08g007350.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00023760g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.33|1|1|1|3|0|259; (*GB) gi|224092374|ref|XP_002334898.1| (e_value=3e-107) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9FF18|C7351_ARATH (e_value=2e-29) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A1 PE=1 SV=1;; (*TAIR) AT5G52400.1 (e_value=1e-100) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=7e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00023760g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|2|0|158; (*GB) gi|224134853|ref|XP_002321921.1| (e_value=2e-89) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9ZW95|C7352_ARATH (e_value=2e-42) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A2 PE=1 SV=1;; (*TAIR) AT5G52400.1 (e_value=1e-79) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00015546g0003.1 protein AED:0.25 eAED:0.25 QI:0|1|0.87|1|1|1|8|275|450; (*GB) gi|224146166|ref|XP_002325904.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5ZL42|BZW2_CHICK (e_value=2e-69) Basic leucine zipper and W2 domain-containing protein 2 OS=Gallus gallus GN=BZW2 PE=2 SV=1;; (*TAIR) AT5G36230.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411;; (*ITAG) Solyc05g055770.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64423607-64429627 transcript_region:SL2.40ch05:64423607..64429627+ go_terms:GO:0031369 functional_description:"Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 **-- A8N5N1_COPC7); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0031369 NbS00052168g0010.1 protein AED:0.20 eAED:0.20 QI:345|0.9|0.90|1|1|1|11|487|419; (*GB) gi|147834848|emb|CAN68309.1| (e_value=4e-99) hypothetical protein VITISV_043507 [Vitis vinifera];; (*SWP) sp|Q93YR3|F10AL_ARATH (e_value=2e-89) FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1;; (*TAIR) AT4G22670.1 (e_value=2e-90) | Symbols: AtHip1, HIP1, TPR11 | HSP70-interacting protein 1 | chr4:11918236-11920671 FORWARD LENGTH=441;; (*ITAG) Solyc08g079260.2.1 (e_value=4e-102) genomic_reference:SL2.40ch08 gene_region:60032686-60038031 transcript_region:SL2.40ch08:60032686..60038031+ go_terms:GO:0030544 functional_description:"Serine/threonine-protein phosphatase (Fragment) (AHRD V1 *--- Q4RFT2_TETNG); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0030544 NbS00052168g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.4|0.16|0.83|0|0|6|229|131 NbS00052168g0012.1 protein AED:0.37 eAED:0.38 QI:0|0.5|0|1|0.5|0.66|3|0|300; (*GB) gi|147767326|emb|CAN68996.1| (e_value=1e-98) hypothetical protein VITISV_008862 [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=1e-84) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=7e-86) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc04g074020.2.1 (e_value=5e-163) genomic_reference:SL2.40ch04 gene_region:57625849-57629056 transcript_region:SL2.40ch04:57625849..57629056- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00052168g0016.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|4|0|223; (*GB) gi|255537049|ref|XP_002509591.1| (e_value=5e-38) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g007470.1.1 (e_value=4e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00044489g0003.1 protein AED:0.20 eAED:0.20 QI:435|0.82|0.94|1|0.88|0.77|18|245|715; (*GB) gi|359474925|ref|XP_002263382.2| (e_value=0.0) PREDICTED: beta-galactosidase 3-like [Vitis vinifera];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=0.0) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.2 (e_value=0.0) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=855;; (*ITAG) Solyc01g110000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88587290-88593387 transcript_region:SL2.40ch01:88587290..88593387+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B9H0V1_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00048154g0003.1 protein AED:0.27 eAED:0.27 QI:218|1|0.8|1|0.75|0.8|5|0|413; (*GB) gi|379067355|gb|AFC90091.1| (e_value=0.0) eukaryotic initiation factor 4A-14 [Nicotiana benthamiana];; (*SWP) sp|Q40467|IF414_TOBAC (e_value=0.0) Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G13920.1 (e_value=0.0) | Symbols: EIF4A1, RH4, TIF4A1 | eukaryotic translation initiation factor 4A1 | chr3:4592635-4594128 REVERSE LENGTH=412;; (*ITAG) Solyc08g062800.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00007034g0001.1 protein AED:0.12 eAED:0.12 QI:53|1|1|1|0.75|0.6|5|753|341; (*GB) gi|225440570|ref|XP_002276763.1| (e_value=1e-141) PREDICTED: uncharacterized protein LOC100264906 [Vitis vinifera];; (*TAIR) AT3G09210.1 (e_value=3e-122) | Symbols: PTAC13 | plastid transcriptionally active 13 | chr3:2825422-2826850 REVERSE LENGTH=333;; (*ITAG) Solyc09g011830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5102680-5106286 transcript_region:SL2.40ch09:5102680..5106286+ go_terms:GO:0032968 functional_description:"Transcription antitermination protein nusG (AHRD V1 *-*- D8IEG9_BRAP9); contains Interpro domain(s) IPR006645 Transcription antitermination protein, NusG, N-terminal "; GO:0032968 NbS00002224g0004.1 protein AED:0.14 eAED:0.14 QI:122|1|1|1|0.66|0.57|7|522|247; (*GB) gi|297735400|emb|CBI17840.3| (e_value=5e-148) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q08623|HDHD1_HUMAN (e_value=1e-72) Pseudouridine-5'-monophosphatase OS=Homo sapiens GN=HDHD1 PE=1 SV=3;; (*TAIR) AT4G25840.1 (e_value=9e-143) | Symbols: GPP1 | glycerol-3-phosphatase 1 | chr4:13139026-13140719 FORWARD LENGTH=298;; (*ITAG) Solyc10g054280.1.1 (e_value=2e-174) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50660995-50672538 transcript_region:SL2.40ch10:50660995..50672538- go_terms:GO:0016787,GO:0008152 functional_description:"Haloacid dehalogenase-like hydrolase family protein (AHRD V1 ***- A8PMG5_BRUMA); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787,GO:0008152 NbS00002224g0103.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|637 NbS00002224g0109.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0|2|0|71 NbS00005074g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|479; (*GB) gi|209954731|dbj|BAG80556.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9AR73|HQGT_RAUSE (e_value=0.0) Hydroquinone glucosyltransferase OS=Rauvolfia serpentina GN=AS PE=1 SV=1;; (*TAIR) AT4G01070.1 (e_value=0.0) | Symbols: GT72B1, UGT72B1 | UDP-Glycosyltransferase superfamily protein | chr4:461858-463300 REVERSE LENGTH=480;; (*ITAG) Solyc10g009580.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3702782-3704550 transcript_region:SL2.40ch10:3702782..3704550- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00005074g0009.1 protein AED:0.25 eAED:0.25 QI:242|0.85|1|1|1|1|8|209|418; (*GB) gi|224130512|ref|XP_002320855.1| (e_value=2e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M158|STR4_ARATH (e_value=3e-140) Rhodanese-like domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=STR4 PE=1 SV=2;; (*TAIR) AT4G01050.1 (e_value=2e-141) | Symbols: TROL | thylakoid rhodanese-like | chr4:455874-458175 FORWARD LENGTH=466;; (*ITAG) Solyc10g009570.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3694886-3699858 transcript_region:SL2.40ch10:3694886..3699858- go_terms:GO:0005515 functional_description:"Rhodanese-related sulfurtransferase (AHRD V1 *--- A4U0Q7_9PROT); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0005515 NbS00005074g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|95 NbS00036287g0009.1 protein AED:0.15 eAED:0.15 QI:302|0.5|0.33|0.66|1|1|3|0|161; (*GB) gi|225459378|ref|XP_002285811.1| (e_value=4e-53) PREDICTED: uncharacterized protein LOC100259038 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=1e-33) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G08570.1 (e_value=5e-50) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:5455123-5455975 REVERSE LENGTH=150;; (*ITAG) Solyc04g072700.2.1 (e_value=5e-75) genomic_reference:SL2.40ch04 gene_region:57252741-57253809 transcript_region:SL2.40ch04:57252741..57253809+ go_terms:GO:0005515 functional_description:"Metal ion binding protein (AHRD V1 **-* B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515 NbS00036287g0001.1 protein AED:0.29 eAED:0.30 QI:253|1|0.9|1|1|1|10|0|522; (*GB) gi|255576176|ref|XP_002528982.1| (e_value=0.0) Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9LX20|ASPL1_ARATH (e_value=0.0) Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1;; (*TAIR) AT5G10080.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:3150843-3153380 FORWARD LENGTH=528;; (*ITAG) Solyc04g072690.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57241466-57247884 transcript_region:SL2.40ch04:57241466..57247884+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M2T2_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00036287g0007.1 protein AED:0.19 eAED:0.52 QI:125|0|0.5|1|0|0|2|0|68 NbS00003190g0004.1 protein AED:0.17 eAED:0.19 QI:918|0.66|0.75|1|0.33|0.75|4|0|292; (*GB) gi|225455586|ref|XP_002268932.1| (e_value=8e-147) PREDICTED: probable aminotransferase ACS12-like [Vitis vinifera];; (*SWP) sp|Q8GYY0|1A112_ARATH (e_value=5e-125) Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2;; (*TAIR) AT5G51690.1 (e_value=4e-126) | Symbols: ACS12 | 1-amino-cyclopropane-1-carboxylate synthase 12 | chr5:20999015-21000957 REVERSE LENGTH=495;; (*ITAG) Solyc03g007070.2.1 (e_value=1e-168) genomic_reference:SL2.40ch03 gene_region:1631548-1637772 transcript_region:SL2.40ch03:1631548..1637772+ go_terms:GO:0042803 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 ***- Q6U5H3_ROSHC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803 NbS00003190g0012.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|64; (*ITAG) Solyc07g055090.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60558676-60559074 transcript_region:SL2.40ch07:60558676..60559074- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1BNQ4_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00003190g0006.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|255557759|ref|XP_002519909.1| (e_value=2e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G12400.1 (e_value=1e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:5005144-5008140 REVERSE LENGTH=541;; (*ITAG) Solyc06g065870.2.1 (e_value=2e-38) genomic_reference:SL2.40ch06 gene_region:37680875-37682988 transcript_region:SL2.40ch06:37680875..37682988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003190g0009.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|1|1|2|0|431; (*GB) gi|225455573|ref|XP_002268893.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256698 [Vitis vinifera];; (*TAIR) AT5G51670.1 (e_value=9e-129) | Symbols: | Protein of unknown function (DUF668) | chr5:20993560-20995096 FORWARD LENGTH=474;; (*ITAG) Solyc03g007090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1644669-1646105 transcript_region:SL2.40ch03:1644669..1646105- functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEX1_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00003190g0005.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|224134561|ref|XP_002321853.1| (e_value=6e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT5G51680.1 (e_value=3e-12) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:20997591-20998755 FORWARD LENGTH=343;; (*ITAG) Solyc03g007080.2.1 (e_value=1e-64) genomic_reference:SL2.40ch03 gene_region:1637846-1638703 transcript_region:SL2.40ch03:1637846..1638703- functional_description:"Genomic DNA chromosome 5 P1 clone MIO24 (AHRD V1 ***- Q9FLJ1_ARATH)"; NbS00003190g0008.1 protein AED:0.88 eAED:0.91 QI:0|0|0.33|0.66|1|1|3|0|90 NbS00003190g0017.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|3|0|159 NbS00019562g0001.1 protein AED:0.12 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|541; (*GB) gi|225429570|ref|XP_002280033.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262760 [Vitis vinifera];; (*SWP) sp|B0BN95|HARB1_RAT (e_value=6e-20) Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1;; (*TAIR) AT5G12010.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3877975-3879483 REVERSE LENGTH=502;; (*ITAG) Solyc07g040960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:48550320-48551819 transcript_region:SL2.40ch07:48550320..48551819+ go_terms:GO:0016042 functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 *--- Q0D898_ORYSJ)"; GO:0016042 NbS00046018g0001.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.4|1|1|1|5|42|372; (*GB) gi|304442676|gb|ADM34979.1| (e_value=2e-170) receptor-like cytoplasmic protein kinase 1 [Capsicum annuum];; (*SWP) sp|Q9LQQ8|RLCK7_ARATH (e_value=6e-155) Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1;; (*TAIR) AT1G07870.2 (e_value=1e-154) | Symbols: | Protein kinase superfamily protein | chr1:2428942-2431843 REVERSE LENGTH=538;; (*ITAG) Solyc11g072660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52967548-52971703 transcript_region:SL2.40ch11:52967548..52971703+ go_terms:GO:0006468 functional_description:"Receptor protein kinase-like protein (AHRD V1 ***- Q9LJU5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005218g0016.1 protein AED:0.05 eAED:0.05 QI:70|0.66|0.75|1|1|1|4|504|132; (*GB) gi|83755093|gb|ABC46407.1| (e_value=1e-63) knotted 1-binding protein 36 [Nicotiana tabacum];; (*TAIR) AT5G03050.1 (e_value=1e-26) | Symbols: | unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:715302-715983 REVERSE LENGTH=140;; (*ITAG) Solyc03g118440.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61375887-61376641 transcript_region:SL2.40ch03:61375887..61376641+ functional_description:"Knotted 1-binding protein 36 (AHRD V1 ***- A0S861_TOBAC)"; NbS00005218g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|296 NbS00005218g0017.1 protein AED:0.17 eAED:0.17 QI:0|0.62|0.77|1|0.62|0.66|9|154|444; (*GB) gi|388517901|gb|AFK47012.1| (e_value=2e-157) unknown [Lotus japonicus];; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=2e-151) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1;; (*TAIR) AT1G28110.2 (e_value=1e-152) | Symbols: SCPL45 | serine carboxypeptidase-like 45 | chr1:9804153-9806832 REVERSE LENGTH=461;; (*ITAG) Solyc03g118370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61318884-61322274 transcript_region:SL2.40ch03:61318884..61322274- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TKD2_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00005218g0012.1 protein AED:0.47 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|61; (*ITAG) Solyc06g068890.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39102551-39102796 transcript_region:SL2.40ch06:39102551..39102796- functional_description:"Unknown Protein (AHRD V1)"; NbS00005218g0022.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|3|0|236; (*ITAG) Solyc05g033910.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:46423905-46425314 transcript_region:SL2.40ch05:46423905..46425314+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005218g0021.1 protein AED:0.77 eAED:0.91 QI:0|0|0|1|0|0|2|0|172 NbS00011921g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|145; (*GB) gi|10798752|dbj|BAB16428.1| (e_value=1e-34) P-rich protein EIG-I30 [Nicotiana tabacum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=7e-21) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G12490.1 (e_value=6e-24) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr4:7409830-7410378 REVERSE LENGTH=182;; (*ITAG) Solyc08g078920.1.1 (e_value=2e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59749698-59750120 transcript_region:SL2.40ch08:59749698..59750120+ go_terms:GO:0008289 functional_description:"Proline-rich protein (AHRD V1 **-- Q41125_PHAVU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00011921g0001.1 protein AED:0.14 eAED:0.15 QI:0|1|0|1|1|1|2|0|268; (*GB) gi|255538828|ref|XP_002510479.1| (e_value=6e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G49990.1 (e_value=7e-62) | Symbols: | unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). | chr3:18532492-18534000 REVERSE LENGTH=502;; (*ITAG) Solyc04g081030.2.1 (e_value=4e-121) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00011921g0010.1 protein AED:0.50 eAED:1.00 QI:0|0|0|1|0|0|2|0|77 NbS00033172g0007.1 protein AED:0.20 eAED:0.23 QI:443|0.75|0.6|1|0.5|0.4|5|0|368; (*GB) gi|255542249|ref|XP_002512188.1| (e_value=0.0) molybdopterin cofactor synthesis protein A, putative [Ricinus communis];; (*SWP) sp|Q39055|CNX2_ARATH (e_value=2e-176) Molybdopterin biosynthesis protein CNX2 OS=Arabidopsis thaliana GN=CNX2 PE=2 SV=1;; (*TAIR) AT2G31955.2 (e_value=2e-177) | Symbols: CNX2 | cofactor of nitrate reductase and xanthine dehydrogenase 2 | chr2:13584635-13586484 REVERSE LENGTH=390;; (*ITAG) Solyc01g073730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70346585-70351511 transcript_region:SL2.40ch01:70346585..70351511- go_terms:GO:0051539,GO:0008152,GO:0051536,GO:0006777,GO:0019008 functional_description:"Molybdenum cofactor biosynthesis protein A (AHRD V1 ***- D0MDU9_RHOM4); contains Interpro domain(s) IPR013483 Molybdenum cofactor biosynthesis protein A "; GO:0051539,GO:0008152,GO:0051536,GO:0006777,GO:0019008 NbS00033172g0006.1 protein AED:0.22 eAED:0.66 QI:9|1|0.5|1|0|0.5|2|0|112 NbS00032799g0009.1 protein AED:0.02 eAED:0.02 QI:218|1|0.75|1|0.33|0.5|4|304|104; (*GB) gi|297734340|emb|CBI15587.3| (e_value=4e-55) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G57860.2 (e_value=9e-51) | Symbols: | Ubiquitin-like superfamily protein | chr5:23437991-23439087 FORWARD LENGTH=95;; (*ITAG) Solyc05g056060.2.1 (e_value=1e-53) genomic_reference:SL2.40ch05 gene_region:64601085-64608155 transcript_region:SL2.40ch05:64601085..64608155+ functional_description:"Ubiquitin-like protein (Fragment) (AHRD V1 *-*- A6N0B7_ORYSI); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00032799g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.33|0.25|1|0.33|0.5|4|0|242; (*GB) gi|493723|emb|CAA45523.1| (e_value=2e-135) photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum];; (*SWP) sp|P12360|CB11_SOLLC (e_value=3e-129) Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1;; (*TAIR) AT3G54890.1 (e_value=4e-122) | Symbols: LHCA1 | photosystem I light harvesting complex gene 1 | chr3:20339706-20340922 REVERSE LENGTH=241;; (*ITAG) Solyc05g056070.2.1 (e_value=2e-134) genomic_reference:SL2.40ch05 gene_region:64606977-64608378 transcript_region:SL2.40ch05:64606977..64608378+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 6A, chloroplastic (AHRD V1 ***- CB11_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00010989g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|224105209|ref|XP_002313728.1| (e_value=3e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21100.1 (e_value=1e-41) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:9048687-9049336 REVERSE LENGTH=187;; (*ITAG) Solyc01g111230.2.1 (e_value=4e-70) genomic_reference:SL2.40ch01 gene_region:89313649-89314591 transcript_region:SL2.40ch01:89313649..89314591+ functional_description:"Disease resistance response like protein (AHRD V1 ***- Q9SZP7_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010989g0005.1 protein AED:0.20 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|107; (*ITAG) Solyc03g118050.2.1 (e_value=6e-21) genomic_reference:SL2.40ch03 gene_region:61095328-61096752 transcript_region:SL2.40ch03:61095328..61096752- go_terms:GO:0008026 functional_description:"Unknown Protein (AHRD V1)"; GO:0008026 NbS00010989g0001.1 protein AED:0.32 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|192; (*GB) gi|224058943|ref|XP_002299656.1| (e_value=8e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42510.1 (e_value=3e-23) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr5:16998268-16998816 REVERSE LENGTH=182;; (*ITAG) Solyc02g032030.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:18016671-18017243 transcript_region:SL2.40ch02:18016671..18017243- functional_description:"Disease resistance response (AHRD V1 ***- D7L1G5_ARALY); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00010989g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|153; (*GB) gi|54606707|dbj|BAD66730.1| (e_value=2e-15) orf141 [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g023940.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00028991g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.8|1|0.75|0.6|5|219|174; (*GB) gi|297743769|emb|CBI36652.3| (e_value=1e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2KID2|NTHL1_BOVIN (e_value=9e-36) Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1;; (*TAIR) AT2G31450.1 (e_value=8e-64) | Symbols: ATNTH1 | DNA glycosylase superfamily protein | chr2:13401318-13404134 REVERSE LENGTH=379;; (*ITAG) Solyc06g073400.2.1 (e_value=1e-89) genomic_reference:SL2.40ch06 gene_region:41622096-41629236 transcript_region:SL2.40ch06:41622096..41629236- go_terms:GO:0034042,GO:0034043 functional_description:"Endonuclease III-like protein 1 (AHRD V1 ***- B6U0P3_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0034042,GO:0034043 NbS00028991g0009.1 protein AED:0.04 eAED:0.11 QI:0|0.5|0|1|0|0|3|0|184; (*GB) gi|350535897|ref|NP_001233963.1| (e_value=1e-91) protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Solanum lycopersicum];; (*SWP) sp|P93227|FNTA_SOLLC (e_value=3e-93) Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1;; (*TAIR) AT3G59380.1 (e_value=4e-45) | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnesyltransferase A | chr3:21944209-21945781 FORWARD LENGTH=326;; (*ITAG) Solyc06g073390.2.1 (e_value=1e-96) genomic_reference:SL2.40ch06 gene_region:41616510-41621899 transcript_region:SL2.40ch06:41616510..41621899+ go_terms:GO:0004660 functional_description:"Farnesyltransferase/type I geranylgeranyltransferase alpha subunit (AHRD V1 **** Q6EZ49_CATRO); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0004660 NbS00028991g0008.1 protein AED:0.22 eAED:0.30 QI:0|0|0.5|1|0|0|2|586|91 NbS00005291g0008.1 protein AED:0.18 eAED:0.18 QI:301|0.92|0.92|1|0.92|0.85|14|463|1132; (*GB) gi|224129136|ref|XP_002328899.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O04933|SPSA2_CRAPL (e_value=0.0) Probable sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1;; (*TAIR) AT1G04920.1 (e_value=0.0) | Symbols: ATSPS3F, SPS3F | sucrose phosphate synthase 3F | chr1:1391674-1395756 REVERSE LENGTH=1062;; (*ITAG) Solyc09g092130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66617015-66625125 transcript_region:SL2.40ch09:66617015..66625125- go_terms:GO:0005985,GO:0009058 functional_description:"Sucrose phosphate synthase (AHRD V1 ***- D6R6Y5_9LILI); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0005985,GO:0009058 NbS00005291g0009.1 protein AED:0.32 eAED:0.41 QI:0|0.2|0|0.83|0|0.16|6|0|304; (*GB) gi|224055853|ref|XP_002298686.1| (e_value=6e-139) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9D099|ACER3_MOUSE (e_value=4e-29) Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1;; (*TAIR) AT4G22330.1 (e_value=2e-135) | Symbols: ATCES1 | Alkaline phytoceramidase (aPHC) | chr4:11798483-11799549 FORWARD LENGTH=255;; (*ITAG) Solyc05g053740.2.1 (e_value=4e-148) genomic_reference:SL2.40ch05 gene_region:62913758-62915753 transcript_region:SL2.40ch05:62913758..62915753- go_terms:GO:0005515,GO:0070774 functional_description:"Alkaline ceramidase (AHRD V1 ***- Q17KM2_AEDAE); contains Interpro domain(s) IPR008901 Alkaline phytoceramidase "; GO:0005515,GO:0070774 NbS00020330g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|639; (*GB) gi|224107849|ref|XP_002314624.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=2e-85) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.1 (e_value=1e-86) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5636693-5640496 REVERSE LENGTH=1045;; (*ITAG) Solyc05g006670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1339459-1341369 transcript_region:SL2.40ch05:1339459..1341369- go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00020330g0017.1 protein AED:0.15 eAED:0.16 QI:0|0.75|0.55|1|0.5|0.55|9|424|525; (*GB) gi|356497824|ref|XP_003517757.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100787325 [Glycine max];; (*TAIR) AT1G59650.1 (e_value=0.0) | Symbols: CW14 | Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492;; (*ITAG) Solyc05g006660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1331164-1338948 transcript_region:SL2.40ch05:1331164..1338948+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00020330g0016.1 protein AED:0.38 eAED:0.41 QI:97|0.44|0.4|0.9|0.88|0.9|10|109|307; (*GB) gi|224102471|ref|XP_002312690.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10417.1 (e_value=2e-28) | Symbols: | Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. | chr1:3424616-3427457 REVERSE LENGTH=431; NbS00017767g0002.1 protein AED:0.31 eAED:0.68 QI:0|0|0|1|1|1|2|0|105 NbS00029294g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|14275856|emb|CAC39619.1| (e_value=1e-72) subunit A of ferredoxin-thioredoxin-reductase [Solanum tuberosum];; (*SWP) sp|P80680|FTRV_MAIZE (e_value=5e-24) Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1;; (*TAIR) AT5G08410.1 (e_value=8e-32) | Symbols: FTRA2 | ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 | chr5:2709974-2710528 REVERSE LENGTH=184;; (*ITAG) Solyc01g087520.2.1 (e_value=3e-75) genomic_reference:SL2.40ch01 gene_region:74221192-74222066 transcript_region:SL2.40ch01:74221192..74222066+ go_terms:GO:0009536 functional_description:"Ferredoxin-thioredoxin reductase variable chain (AHRD V1 *-*- B6UCW8_MAIZE); contains Interpro domain(s) IPR004207 Ferredoxin thioredoxin reductase, alpha chain "; GO:0009536 NbS00038567g0005.1 protein AED:0.07 eAED:0.08 QI:407|1|0.90|1|0.7|0.63|11|0|650; (*GB) gi|225457612|ref|XP_002274079.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At2g33640-like [Vitis vinifera];; (*SWP) sp|Q6DR03|ZDHC3_ARATH (e_value=0.0) Probable S-acyltransferase At2g33640 OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1;; (*TAIR) AT2G33640.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr2:14239500-14242240 FORWARD LENGTH=565;; (*ITAG) Solyc04g082650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63855181-63861096 transcript_region:SL2.40ch04:63855181..63861096+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00015289g0011.1 protein AED:0.35 eAED:0.37 QI:0|0.70|0.55|1|0.58|0.72|18|0|859; (*GB) gi|224063319|ref|XP_002301094.1| (e_value=1e-129) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7S0|ULP2B_ARATH (e_value=2e-116) Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3;; (*TAIR) AT1G09730.2 (e_value=2e-117) | Symbols: | Cysteine proteinases superfamily protein | chr1:3148017-3154236 REVERSE LENGTH=931;; (*ITAG) Solyc11g017040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7820295-7844282 transcript_region:SL2.40ch11:7820295..7844282+ go_terms:GO:0006508 functional_description:"Sentrin specific protease 1b (AHRD V1 *-*- D0G0B1_XENLA); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015289g0012.1 protein AED:0.29 eAED:0.29 QI:126|1|1|1|0.87|0.77|9|462|326; (*GB) gi|255561759|ref|XP_002521889.1| (e_value=0.0) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|Q38884|EIF3I_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2;; (*TAIR) AT2G46290.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:19005910-19007797 REVERSE LENGTH=355;; (*ITAG) Solyc11g017070.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:7857531-7863332 transcript_region:SL2.40ch11:7857531..7863332- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 ***- B6SSB6_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbC24512192g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|61; (*GB) gi|359484689|ref|XP_002268798.2| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera];; (*TAIR) AT1G80530.1 (e_value=3e-24) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc03g117300.2.1 (e_value=6e-34) genomic_reference:SL2.40ch03 gene_region:60527438-60531300 transcript_region:SL2.40ch03:60527438..60531300+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00012350g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.5|1|0.33|0.25|4|0|414; (*GB) gi|225430726|ref|XP_002265804.1| (e_value=0.0) PREDICTED: tubby-like F-box protein 5-like [Vitis vinifera];; (*SWP) sp|Q6Z2G9|TLP5_ORYSJ (e_value=0.0) Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1;; (*TAIR) AT2G18280.2 (e_value=1e-167) | Symbols: AtTLP2, TLP2 | tubby like protein 2 | chr2:7946754-7948176 FORWARD LENGTH=394;; (*ITAG) Solyc02g085130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42689477-42691624 transcript_region:SL2.40ch02:42689477..42691624+ go_terms:GO:0051015 functional_description:"Tubby-like F-box protein 5 (AHRD V1 ***- TLP5_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0051015 NbS00014830g0004.1 protein AED:0.23 eAED:0.23 QI:185|0.66|1|1|0.66|1|4|365|131; (*GB) gi|225426050|ref|XP_002274995.1| (e_value=6e-61) PREDICTED: V-type proton ATPase subunit E [Vitis vinifera];; (*SWP) sp|O23948|VATE_GOSHI (e_value=2e-59) V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1;; (*TAIR) AT4G11150.1 (e_value=1e-56) | Symbols: TUF, emb2448, TUFF, VHA-E1 | vacuolar ATP synthase subunit E1 | chr4:6800091-6801696 FORWARD LENGTH=230;; (*ITAG) Solyc08g081910.2.1 (e_value=2e-63) genomic_reference:SL2.40ch08 gene_region:61988688-61993931 transcript_region:SL2.40ch08:61988688..61993931- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit E (AHRD V1 **** D3PGM0_9MAXI); contains Interpro domain(s) IPR002842 ATPase, V1/A1 complex, subunit E "; GO:0005515,GO:0046961 NbS00042771g0008.1 protein AED:0.25 eAED:0.27 QI:84|0.84|0.71|0.92|0.92|0.92|14|0|481; (*GB) gi|26986106|emb|CAD27443.1| (e_value=0.0) vacuolar ATPase subunit B [Mesembryanthemum crystallinum];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=0.0) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.5 (e_value=0.0) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494;; (*ITAG) Solyc01g111760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00042771g0009.1 protein AED:0.03 eAED:0.03 QI:56|0.83|0.85|1|0.33|0.28|7|186|435; (*GB) gi|255560495|ref|XP_002521262.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G38500.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF616) | chr4:18008418-18010693 FORWARD LENGTH=499;; (*ITAG) Solyc01g111770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89707745-89712319 transcript_region:SL2.40ch01:89707745..89712319- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *-*- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00055590g0006.1 protein AED:0.02 eAED:0.02 QI:65|1|0.66|1|1|1|3|0|190; (*GB) gi|224108007|ref|XP_002314685.1| (e_value=9e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22600.1 (e_value=5e-33) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc09g065430.2.1 (e_value=1e-64) genomic_reference:SL2.40ch09 gene_region:59128953-59130177 transcript_region:SL2.40ch09:59128953..59130177- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9NBN9_POPTR); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00055590g0005.1 protein AED:0.41 eAED:0.42 QI:0|0.33|0|0.5|1|1|4|0|219; (*GB) gi|255567552|ref|XP_002524755.1| (e_value=6e-36) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT2G48140.1 (e_value=6e-32) | Symbols: EDA4 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:19686442-19687444 FORWARD LENGTH=200;; (*ITAG) Solyc09g065440.2.1 (e_value=2e-64) genomic_reference:SL2.40ch09 gene_region:59131289-59133090 transcript_region:SL2.40ch09:59131289..59133090+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00012504g0010.1 protein AED:0.18 eAED:0.18 QI:443|0.8|0.66|1|0.4|0.66|6|0|257; (*GB) gi|147834515|emb|CAN72000.1| (e_value=7e-59) hypothetical protein VITISV_032712 [Vitis vinifera];; (*SWP) sp|Q9ZU95|NUD17_ARATH (e_value=8e-57) Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1;; (*TAIR) AT2G01670.1 (e_value=6e-58) | Symbols: atnudt17, NUDT17 | nudix hydrolase homolog 17 | chr2:296889-297818 REVERSE LENGTH=182;; (*ITAG) Solyc12g040870.1.1 (e_value=3e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:40886048-40887708 transcript_region:SL2.40ch12:40886048..40887708- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 ***- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00012504g0001.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|118; (*ITAG) Solyc08g048470.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00012504g0008.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|0|0|4|0|182; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=7e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00008445g0004.1 protein AED:0.13 eAED:0.13 QI:59|1|1|1|1|1|3|155|252; (*GB) gi|225437316|ref|XP_002263944.1| (e_value=4e-114) PREDICTED: stress-related protein-like [Vitis vinifera];; (*SWP) sp|Q9SW70|SRP_VITRI (e_value=2e-115) Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1;; (*TAIR) AT3G05500.1 (e_value=5e-79) | Symbols: | Rubber elongation factor protein (REF) | chr3:1593540-1594802 FORWARD LENGTH=246;; (*ITAG) Solyc09g074930.2.1 (e_value=8e-139) genomic_reference:SL2.40ch09 gene_region:62225793-62227794 transcript_region:SL2.40ch09:62225793..62227794+ functional_description:"REF-like stress related protein 1 (AHRD V1 *--- Q6XNP4_HEVBR); contains Interpro domain(s) IPR008802 Rubber elongation factor "; NbS00034861g0006.1 protein AED:0.41 eAED:0.45 QI:0|0|0|1|0.25|0.8|5|0|167; (*GB) gi|359486424|ref|XP_002268768.2| (e_value=1e-63) PREDICTED: syntaxin-31-like [Vitis vinifera];; (*SWP) sp|Q9FFK1|SYP31_ARATH (e_value=1e-49) Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1;; (*TAIR) AT5G05760.1 (e_value=9e-51) | Symbols: SYP31, ATSED5, ATSYP31, SED5 | syntaxin of plants 31 | chr5:1729111-1730903 REVERSE LENGTH=336;; (*ITAG) Solyc07g054140.2.1 (e_value=1e-70) genomic_reference:SL2.40ch07 gene_region:59835012-59838461 transcript_region:SL2.40ch07:59835012..59838461+ go_terms:GO:0005484 functional_description:"Syntaxin 32 (AHRD V1 ***- B6TET0_MAIZE); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00000451g0010.1 protein AED:0.30 eAED:0.34 QI:79|0.85|0.87|1|0.85|0.75|8|276|240; (*GB) gi|147861823|emb|CAN81085.1| (e_value=2e-71) hypothetical protein VITISV_028128 [Vitis vinifera];; (*TAIR) AT1G16040.1 (e_value=7e-57) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: integral to membrane, endoplasmic reticulum membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GPI biosynthesis protein Pig-F (InterPro:IPR009580); Has 280 Blast hits to 280 proteins in 133 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 111; Plants - 44; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:5504747-5506456 FORWARD LENGTH=226;; (*ITAG) Solyc03g117650.2.1 (e_value=5e-104) genomic_reference:SL2.40ch03 gene_region:60787314-60791258 transcript_region:SL2.40ch03:60787314..60791258+ go_terms:GO:0016021 functional_description:"Glycosylphosphatidylinositol anchor biosynthesis protein 11 (AHRD V1 ***- B4FCF2_MAIZE); contains Interpro domain(s) IPR009580 GPI biosynthesis protein Pig-F "; GO:0016021 NbS00000451g0013.1 protein AED:0.25 eAED:0.51 QI:14|0|0|1|0|0.33|3|0|220; (*ITAG) Solyc03g117660.2.1 (e_value=4e-59) genomic_reference:SL2.40ch03 gene_region:60794807-60800638 transcript_region:SL2.40ch03:60794807..60800638+ go_terms:GO:0008270 functional_description:"Mandelonitrile lyase (AHRD V1 *-*- B6SVJ2_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00000451g0001.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|447; (*GB) gi|224072745|ref|XP_002303860.1| (e_value=1e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54R82|MKKA_DICDI (e_value=9e-29) Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2;; (*TAIR) AT4G36950.1 (e_value=2e-69) | Symbols: MAPKKK21 | mitogen-activated protein kinase kinase kinase 21 | chr4:17422834-17423844 REVERSE LENGTH=336;; (*ITAG) Solyc03g117640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60782770-60783987 transcript_region:SL2.40ch03:60782770..60783987- go_terms:GO:0042802 functional_description:"Serine/threonine-protein kinase 3 (AHRD V1 ***- STK3_DANRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0042802 NbS00000451g0014.1 protein AED:0.30 eAED:0.36 QI:0|0|0|1|0|0|2|0|174; (*ITAG) Solyc03g117660.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:60794807-60800638 transcript_region:SL2.40ch03:60794807..60800638+ go_terms:GO:0008270 functional_description:"Mandelonitrile lyase (AHRD V1 *-*- B6SVJ2_MAIZE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00027281g0008.1 protein AED:0.26 eAED:0.30 QI:0|0.5|0.42|1|0.33|0.28|7|0|416; (*GB) gi|61223199|gb|AAX40666.1| (e_value=3e-84) sesquiterpene synthase [Fabiana imbricata];; (*SWP) sp|Q6Q3H3|TPSGD_VITVI (e_value=7e-52) (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1;; (*TAIR) AT5G23960.1 (e_value=2e-38) | Symbols: ATTPS21, TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=547;; (*ITAG) Solyc07g051940.2.1 (e_value=5e-82) genomic_reference:SL2.40ch07 gene_region:57815208-57818076 transcript_region:SL2.40ch07:57815208..57818076- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00027281g0007.1 protein AED:0.45 eAED:0.46 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|343409100|gb|AEM23830.1| (e_value=6e-47) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|O64961|TPSGC_SOLLC (e_value=2e-31) Germacrene C synthase OS=Solanum lycopersicum GN=SSTLE1 PE=1 SV=1;; (*TAIR) AT1G61680.1 (e_value=9e-24) | Symbols: TPS14, ATTPS14 | terpene synthase 14 | chr1:22772455-22774687 REVERSE LENGTH=569;; (*ITAG) Solyc12g006570.1.1 (e_value=7e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1067723-1072118 transcript_region:SL2.40ch12:1067723..1072118+ go_terms:GO:0016829,GO:0008152 functional_description:"Germacrene-D synthase (AHRD V1 ***- Q32W37_ACTDE); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829,GO:0008152 NbS00027281g0006.1 protein AED:0.40 eAED:0.44 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|343409100|gb|AEM23830.1| (e_value=4e-62) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q6Q3H2|TPSVS_VITVI (e_value=2e-32) Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=7e-24) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc07g052140.2.1 (e_value=5e-67) genomic_reference:SL2.40ch07 gene_region:57994754-57995894 transcript_region:SL2.40ch07:57994754..57995894- go_terms:GO:0016829 functional_description:"(-)-germacrene D synthase (AHRD V1 ***- Q64K29_9ROSI); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbS00000779g0001.1 protein AED:0.14 eAED:0.18 QI:0|0.66|0.5|1|1|1|4|0|510; (*GB) gi|147858794|emb|CAN78702.1| (e_value=4e-59) hypothetical protein VITISV_034263 [Vitis vinifera];; (*SWP) sp|Q1PFW3|CCSDS_ARATH (e_value=3e-38) Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2;; (*TAIR) AT1G14750.1 (e_value=2e-39) | Symbols: SDS | Cyclin family protein | chr1:5079674-5082423 REVERSE LENGTH=578;; (*ITAG) Solyc04g008070.1.1 (e_value=7e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00054628g0004.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|1|3|0|194; (*GB) gi|297836674|ref|XP_002886219.1| (e_value=4e-88) hypothetical protein ARALYDRAFT_319835 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O48670|RER1A_ARATH (e_value=7e-85) Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1;; (*TAIR) AT4G39220.1 (e_value=5e-86) | Symbols: ATRER1A | Rer1 family protein | chr4:18264280-18265531 FORWARD LENGTH=191;; (*ITAG) Solyc01g109770.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:88383747-88387401 transcript_region:SL2.40ch01:88383747..88387401- go_terms:GO:0016021 functional_description:"RER1 protein (AHRD V1 ***- Q9P0H9_HUMAN); contains Interpro domain(s) IPR004932 Retrieval of early ER protein Rer1 "; GO:0016021 NbS00054628g0002.1 protein AED:0.18 eAED:0.19 QI:0|1|0.66|1|0|0|3|625|94; (*GB) gi|15236146|ref|NP_195180.1| (e_value=4e-19) NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana];; (*TAIR) AT4G34540.1 (e_value=1e-21) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr4:16500506-16501932 FORWARD LENGTH=306;; (*ITAG) Solyc03g044720.1.1 (e_value=5e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:14367236-14368165 transcript_region:SL2.40ch03:14367236..14368165- go_terms:GO:0010283 functional_description:"Pinoresinol-lariciresinol reductase (AHRD V1 **** Q9LD14_THUPL); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0010283 NbS00008200g0011.1 protein AED:0.13 eAED:0.14 QI:482|0.9|0.81|1|0.7|1|11|0|441; (*GB) gi|225452159|ref|XP_002263731.1| (e_value=0.0) PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q8W575|CSN3_ARATH (e_value=0.0) COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2;; (*TAIR) AT5G14250.1 (e_value=0.0) | Symbols: COP13, CSN3, FUS11 | Proteasome component (PCI) domain protein | chr5:4597970-4600561 FORWARD LENGTH=429;; (*ITAG) Solyc02g093920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49186630-49191575 transcript_region:SL2.40ch02:49186630..49191575- go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 3 (AHRD V1 ***- B6TEU1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00008200g0009.1 protein AED:0.15 eAED:0.16 QI:107|0.66|0.78|0.94|0.72|0.68|19|408|529; (*GB) gi|3914403|sp|O24164.1|PPOM_TOBAC (e_value=0.0) RecName: Full=Protoporphyrinogen oxidase, mitochondrial; AltName: Full=PX-2; AltName: Full=Protoporphyrinogen IX oxidase isozyme II; Short=PPO II; Short=PPX II;; (*SWP) sp|O24164|PPOM_TOBAC (e_value=0.0) Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1;; (*TAIR) AT5G14220.1 (e_value=2e-180) | Symbols: HEMG2, MEE61, PPO2 | Flavin containing amine oxidoreductase family | chr5:4583506-4587369 REVERSE LENGTH=508;; (*ITAG) Solyc03g005080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54076-59635 transcript_region:SL2.40ch03:54076..59635- go_terms:GO:0055114 functional_description:"Protoporphyrinogen IX oxidase (AHRD V1 ***- Q9SLW5_SOYBN); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00008200g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.6|0.33|0.66|1|0.83|6|0|417; (*GB) gi|224133070|ref|XP_002327954.1| (e_value=0.0) 4-coumarate-coa ligase [Populus trichocarpa];; (*SWP) sp|Q84P23|4CLL9_ARATH (e_value=6e-144) 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2;; (*TAIR) AT5G63380.1 (e_value=5e-145) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:25387581-25390026 REVERSE LENGTH=562;; (*ITAG) Solyc03g005090.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60385-67905 transcript_region:SL2.40ch03:60385..67905- go_terms:GO:0008152 functional_description:"4-coumarate-coa ligase (AHRD V1 *-*- B9MY03_POPTR); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00049214g0009.1 protein AED:0.26 eAED:0.27 QI:0|0.33|0.5|1|0|0|4|557|403; (*GB) gi|224062428|ref|XP_002300832.1| (e_value=0.0) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9M1W7|SKI30_ARATH (e_value=2e-177) F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2;; (*TAIR) AT3G63220.1 (e_value=6e-179) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358577 REVERSE LENGTH=345;; (*ITAG) Solyc09g065400.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:59112810-59113847 transcript_region:SL2.40ch09:59112810..59113847- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00049214g0010.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.5|0.75|0.33|0.5|4|0|120; (*GB) gi|255586071|ref|XP_002533700.1| (e_value=4e-13) amsh, putative [Ricinus communis];; (*SWP) sp|Q5PNU3|AMSH3_ARATH (e_value=8e-13) AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2;; (*TAIR) AT4G16144.1 (e_value=6e-14) | Symbols: AMSH3 | associated molecule with the SH3 domain of STAM 3 | chr4:9138053-9141422 REVERSE LENGTH=507;; (*ITAG) Solyc03g119330.2.1 (e_value=1e-13) genomic_reference:SL2.40ch03 gene_region:62024109-62031646 transcript_region:SL2.40ch03:62024109..62031646- functional_description:"26S proteasome regulatory subunit (AHRD V1 *--- A7EKH5_SCLS1); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00046432g0006.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.42|1|0.33|0.28|7|165|526; (*GB) gi|147768261|emb|CAN78125.1| (e_value=0.0) hypothetical protein VITISV_028754 [Vitis vinifera];; (*SWP) sp|Q9FH36|GAUTC_ARATH (e_value=0.0) Probable galacturonosyltransferase 12 OS=Arabidopsis thaliana GN=GAUT12 PE=2 SV=1;; (*TAIR) AT5G54690.1 (e_value=0.0) | Symbols: GAUT12, LGT6, IRX8 | galacturonosyltransferase 12 | chr5:22219435-22221769 REVERSE LENGTH=535;; (*ITAG) Solyc10g006500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1081436-1085661 transcript_region:SL2.40ch10:1081436..1085661+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00002766g0001.1 protein AED:0.14 eAED:0.15 QI:152|0.66|0.71|1|1|1|7|422|191; (*GB) gi|225463119|ref|XP_002265135.1| (e_value=1e-108) PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera];; (*SWP) sp|Q9M9G7|CAPZB_ARATH (e_value=4e-107) Probable F-actin-capping protein subunit beta OS=Arabidopsis thaliana GN=At1g71790 PE=2 SV=1;; (*TAIR) AT1G71790.1 (e_value=3e-108) | Symbols: | Subunits of heterodimeric actin filament capping protein Capz superfamily | chr1:26996869-26998785 FORWARD LENGTH=256;; (*ITAG) Solyc12g056770.1.1 (e_value=7e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48211261-48217095 transcript_region:SL2.40ch12:48211261..48217095+ go_terms:GO:0008290 functional_description:"F-actin capping protein beta subunit family protein (AHRD V1 ***- D7KYY1_ARALY); contains Interpro domain(s) IPR001698 F-actin capping protein, beta subunit "; GO:0008290 NbS00012539g0001.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|2|0|524; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc02g067980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32618330-32625924 transcript_region:SL2.40ch02:32618330..32625924- go_terms:GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0019901 NbS00029501g0006.1 protein AED:0.07 eAED:0.07 QI:521|0.66|0.75|1|0.33|0.25|4|266|66 NbS00029501g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|1|1|3|0|139; (*GB) gi|255551597|ref|XP_002516844.1| (e_value=3e-24) copper ion binding protein, putative [Ricinus communis];; (*TAIR) AT3G21490.1 (e_value=6e-19) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr3:7573065-7573669 FORWARD LENGTH=136;; (*ITAG) Solyc03g098650.2.1 (e_value=3e-44) genomic_reference:SL2.40ch03 gene_region:54396043-54397530 transcript_region:SL2.40ch03:54396043..54397530+ go_terms:GO:0030001 functional_description:"ATFP3 (AHRD V1 *-*- B6U4D0_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00029501g0011.1 protein AED:0.35 eAED:0.65 QI:0|0.66|0.57|1|0.5|0.71|7|0|227; (*GB) gi|225440215|ref|XP_002278511.1| (e_value=9e-82) PREDICTED: protein sym-1 [Vitis vinifera];; (*SWP) sp|Q5TZ51|MPV17_DANRE (e_value=5e-23) Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1;; (*TAIR) AT5G19750.1 (e_value=7e-72) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr5:6677124-6679127 FORWARD LENGTH=288;; (*ITAG) Solyc03g098640.2.1 (e_value=1e-96) genomic_reference:SL2.40ch03 gene_region:54390977-54396463 transcript_region:SL2.40ch03:54390977..54396463+ go_terms:GO:0009401,GO:0016021 functional_description:"Mpv17 protein (AHRD V1 *--- Q178F4_AEDAE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0009401,GO:0016021 NbS00000645g0003.1 protein AED:0.02 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|438; (*GB) gi|224104298|ref|XP_002313387.1| (e_value=4e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=5e-45) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=6e-58) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=6e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00051101g0002.1 protein AED:0.27 eAED:0.33 QI:11|0.16|0.42|0.85|1|1|7|245|341; (*GB) gi|45935111|gb|AAS79569.1| (e_value=7e-39) hypothetical protein [Ipomoea trifida];; (*TAIR) AT5G27990.1 (e_value=1e-16) | Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr5:10017358-10018265 FORWARD LENGTH=184;; (*ITAG) Solyc01g096760.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:79542130-79546287 transcript_region:SL2.40ch01:79542130..79546287- functional_description:"Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region "; NbS00021198g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|152; (*GB) gi|57013968|ref|YP_173440.1| (e_value=1e-88) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00031590g0005.1 protein AED:0.36 eAED:0.36 QI:149|1|1|1|0.33|0.75|4|272|74; (*GB) gi|224126083|ref|XP_002319751.1| (e_value=7e-19) predicted protein [Populus trichocarpa]; NbS00050394g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|255557215|ref|XP_002519638.1| (e_value=3e-52) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q8LF89|GRXC8_ARATH (e_value=1e-32) Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2;; (*TAIR) AT5G14070.1 (e_value=8e-34) | Symbols: ROXY2 | Thioredoxin superfamily protein | chr5:4541915-4542337 FORWARD LENGTH=140;; (*ITAG) Solyc08g036570.1.1 (e_value=6e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:25745969-25746349 transcript_region:SL2.40ch08:25745969..25746349- go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9GF65_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00019952g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|1|1|2|0|180; (*GB) gi|165977495|gb|ABY76322.1| (e_value=8e-62) AP/ERF transcription factor [Ipomoea batatas];; (*SWP) sp|Q94AW5|ERF03_ARATH (e_value=4e-52) Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1;; (*TAIR) AT5G25190.1 (e_value=3e-53) | Symbols: | Integrase-type DNA-binding superfamily protein | chr5:8707007-8707655 REVERSE LENGTH=181;; (*ITAG) Solyc06g068360.2.1 (e_value=3e-79) genomic_reference:SL2.40ch06 gene_region:38738369-38739279 transcript_region:SL2.40ch06:38738369..38739279- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00019952g0008.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|0.5|0.66|3|0|91 NbS00024084g0008.1 protein AED:0.34 eAED:0.34 QI:707|1|0.9|1|0.66|0.5|10|0|187; (*GB) gi|357454255|ref|XP_003597408.1| (e_value=3e-33) hypothetical protein MTR_2g097780 [Medicago truncatula];; (*TAIR) AT5G59210.1 (e_value=3e-32) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=434;; (*ITAG) Solyc09g055760.2.1 (e_value=6e-44) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00044201g0001.1 protein AED:0.02 eAED:0.02 QI:16|0|0.5|1|0|0.5|2|573|265; (*GB) gi|225459168|ref|XP_002285717.1| (e_value=3e-101) PREDICTED: purine permease 3 [Vitis vinifera];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-79) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-80) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc07g008440.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:3314726-3318115 transcript_region:SL2.40ch07:3314726..3318115- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00000347g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|69; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=2e-16) hypothetical protein [Nicotiana tabacum]; NbS00002603g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|0|0|2|0|305; (*GB) gi|255539066|ref|XP_002510598.1| (e_value=1e-39) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SGS5|Y1607_ARATH (e_value=2e-11) Uncharacterized protein At1g76070 OS=Arabidopsis thaliana GN=At1g76070 PE=1 SV=1;; (*TAIR) AT1G76070.1 (e_value=2e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:28546617-28547435 FORWARD LENGTH=272;; (*ITAG) Solyc04g081960.1.1 (e_value=6e-41) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:63389913-63390620 transcript_region:SL2.40ch04:63389913..63390620- functional_description:"Syringolide-induced protein 14-1-1 (Fragment) (AHRD V1 *-*- Q06H38_ARAHY)"; NbS00021267g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.28|1|0.66|0.42|7|0|669; (*GB) gi|255546425|ref|XP_002514272.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=0.0) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g007220.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1636828-1640811 transcript_region:SL2.40ch12:1636828..1640811- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00021267g0018.1 protein AED:0.23 eAED:0.23 QI:324|1|0.8|1|0.25|0.4|5|64|300; (*GB) gi|365818527|gb|AEX00352.1| (e_value=1e-146) IAA8 [Solanum lycopersicum];; (*SWP) sp|Q9ZSY8|IAA27_ARATH (e_value=5e-84) Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1;; (*TAIR) AT4G29080.1 (e_value=4e-85) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305;; (*ITAG) Solyc12g007230.1.1 (e_value=2e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1648825-1652254 transcript_region:SL2.40ch12:1648825..1652254+ go_terms:GO:0005634,GO:0046983 functional_description:"Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005634,GO:0046983 NbS00021267g0017.1 protein AED:0.40 eAED:0.40 QI:0|1|0|1|1|0.5|2|0|219; (*GB) gi|255546425|ref|XP_002514272.1| (e_value=9e-90) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q8LPL2|PTR32_ARATH (e_value=2e-69) Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2;; (*TAIR) AT3G16180.1 (e_value=1e-70) | Symbols: | Major facilitator superfamily protein | chr3:5481477-5484943 REVERSE LENGTH=591;; (*ITAG) Solyc12g007220.1.1 (e_value=5e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1636828-1640811 transcript_region:SL2.40ch12:1636828..1640811- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00061610g0005.1 protein AED:0.37 eAED:0.37 QI:283|1|1|1|0.33|0.57|7|332|311; (*GB) gi|297829558|ref|XP_002882661.1| (e_value=0.0) transcription initiation factor IIB-2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SS44|TF2B2_ARATH (e_value=0.0) Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1;; (*TAIR) AT3G10330.1 (e_value=0.0) | Symbols: | Cyclin-like family protein | chr3:3199907-3201642 FORWARD LENGTH=312;; (*ITAG) Solyc10g079360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60231370-60236467 transcript_region:SL2.40ch10:60231370..60236467- go_terms:GO:0006413,GO:0006355,GO:0045449 functional_description:"Transcription initiation factor IIB-2 (AHRD V1 ***- D7L8X6_ARALY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0006413,GO:0006355,GO:0045449 NbC25283545g0003.1 protein AED:0.07 eAED:0.08 QI:0|0|0|1|1|1|2|0|272; (*ITAG) Solyc02g070620.2.1 (e_value=1e-132) genomic_reference:SL2.40ch02 gene_region:34901450-34903246 transcript_region:SL2.40ch02:34901450..34903246+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005657g0004.1 protein AED:0.05 eAED:0.05 QI:152|1|1|1|0.75|0.66|9|279|449; (*GB) gi|255566211|ref|XP_002524093.1| (e_value=3e-54) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G35880.1 (e_value=6e-50) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr2:15063204-15065259 REVERSE LENGTH=432;; (*ITAG) Solyc10g081730.1.1 (e_value=2e-170) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62074358-62076681 transcript_region:SL2.40ch10:62074358..62076681- functional_description:"Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00027117g0004.1 protein AED:0.13 eAED:0.16 QI:0|0|0.5|1|1|1|2|0|178; (*GB) gi|118484012|gb|ABK93893.1| (e_value=2e-37) unknown [Populus trichocarpa];; (*TAIR) AT1G15380.2 (e_value=1e-25) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr1:5290955-5292287 FORWARD LENGTH=174;; (*ITAG) Solyc01g103590.2.1 (e_value=6e-53) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00009734g0003.1 protein AED:0.10 eAED:0.10 QI:59|1|0.83|1|1|1|6|0|1160; (*GB) gi|225464529|ref|XP_002272399.1| (e_value=0.0) PREDICTED: methyltransferase-like protein 1-like [Vitis vinifera];; (*SWP) sp|Q94AI4|METL1_ARATH (e_value=0.0) Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=1 SV=1;; (*TAIR) AT4G09980.1 (e_value=0.0) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963;; (*ITAG) Solyc05g056210.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64715534-64721779 transcript_region:SL2.40ch05:64715534..64721779- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00046257g0003.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|392; (*GB) gi|367465855|gb|AEX15600.1| (e_value=0.0) YUC-like protein 1 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=0.0) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc06g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1915865-1918482 transcript_region:SL2.40ch06:1915865..1918482- go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00059029g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|1|1|0.66|3|0|132; (*GB) gi|225466259|ref|XP_002271154.1| (e_value=2e-48) PREDICTED: universal stress protein A-like protein [Vitis vinifera];; (*TAIR) AT3G03270.2 (e_value=1e-46) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:762136-763075 REVERSE LENGTH=159;; (*ITAG) Solyc04g014600.2.1 (e_value=2e-60) genomic_reference:SL2.40ch04 gene_region:4872992-4874958 transcript_region:SL2.40ch04:4872992..4874958+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7L0F0_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbC25518114g0001.1 protein AED:0.44 eAED:0.48 QI:21|1|0|1|0|0|2|0|57; (*GB) gi|296085980|emb|CBI31421.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93YU5|EXOC4_ARATH (e_value=4e-17) Probable exocyst complex component 4 OS=Arabidopsis thaliana GN=SEC8 PE=1 SV=1;; (*TAIR) AT3G10380.1 (e_value=3e-18) | Symbols: SEC8, ATSEC8 | subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053;; (*ITAG) Solyc11g008340.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2532878-2550743 transcript_region:SL2.40ch11:2532878..2550743+ go_terms:GO:0000145 functional_description:"Exocyst complex component 4 (AHRD V1 *-*- B0W348_CULQU); contains Interpro domain(s) IPR007191 Sec8 exocyst complex component specific domain "; GO:0000145 NbS00009920g0004.1 protein AED:0.19 eAED:0.19 QI:369|1|1|1|1|1|14|262|625; (*GB) gi|24459979|dbj|BAC22617.1| (e_value=0.0) UDP-glucose:sterol 3-O-glucosyltransferase [Panax ginseng];; (*SWP) sp|Q54IL5|UGT52_DICDI (e_value=1e-68) UDP-sugar-dependent glycosyltransferase 52 OS=Dictyostelium discoideum GN=ugt52 PE=2 SV=1;; (*TAIR) AT3G07020.2 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2218120-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc09g061860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56137404-56149985 transcript_region:SL2.40ch09:56137404..56149985+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00007168g0010.1 protein AED:0.15 eAED:0.34 QI:41|0|0|1|0.2|0|6|0|228; (*GB) gi|147779359|emb|CAN70084.1| (e_value=1e-73) hypothetical protein VITISV_003005 [Vitis vinifera];; (*TAIR) AT1G08230.2 (e_value=3e-52) | Symbols: | Transmembrane amino acid transporter family protein | chr1:2583715-2586700 REVERSE LENGTH=451;; (*ITAG) Solyc11g066800.1.1 (e_value=3e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49679693-49686191 transcript_region:SL2.40ch11:49679693..49686191- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9HLA1_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00018909g0005.1 protein AED:0.25 eAED:0.25 QI:325|1|1|1|0.87|0.77|9|605|213; (*GB) gi|356460909|ref|NP_001239047.1| (e_value=5e-146) calcineurin B-like 1 [Solanum lycopersicum];; (*SWP) sp|O81445|CNBL1_ARATH (e_value=1e-131) Calcineurin B-like protein 1 OS=Arabidopsis thaliana GN=CBL1 PE=1 SV=3;; (*TAIR) AT4G17615.1 (e_value=1e-132) | Symbols: CBL1, ATCBL1, SCABP5 | calcineurin B-like protein 1 | chr4:9817142-9818995 FORWARD LENGTH=213;; (*ITAG) Solyc08g077770.2.1 (e_value=1e-148) genomic_reference:SL2.40ch08 gene_region:58838680-58845331 transcript_region:SL2.40ch08:58838680..58845331- go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **-* B2ZYT8_VICFA); contains Interpro domain(s) IPR015757 Calcineurin B protein "; GO:0005509 NbS00021125g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|82 NbS00000968g0016.1 protein AED:0.52 eAED:0.52 QI:278|0|0.5|0.5|1|1|2|0|71 NbS00000968g0017.1 protein AED:0.04 eAED:0.04 QI:496|1|1|1|0.33|0.5|4|240|296; (*GB) gi|133711803|gb|ABO36621.1| (e_value=4e-174) mitochondrial carrier protein [Solanum lycopersicum];; (*SWP) sp|Q93XM7|MCAT_ARATH (e_value=2e-154) Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=1 SV=1;; (*TAIR) AT5G46800.1 (e_value=1e-155) | Symbols: BOU | Mitochondrial substrate carrier family protein | chr5:18988779-18989810 REVERSE LENGTH=300;; (*ITAG) Solyc10g079200.1.1 (e_value=8e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60110983-60112071 transcript_region:SL2.40ch10:60110983..60112071- go_terms:GO:0016020 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- B1N662_SOLLC); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00000968g0018.1 protein AED:0.14 eAED:0.14 QI:133|1|1|1|1|1|5|322|364; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=4e-85) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*TAIR) AT5G46640.1 (e_value=1e-45) | Symbols: | AT hook motif DNA-binding family protein | chr5:18924670-18926292 FORWARD LENGTH=386;; (*ITAG) Solyc08g077030.2.1 (e_value=2e-92) genomic_reference:SL2.40ch08 gene_region:58136733-58143474 transcript_region:SL2.40ch08:58136733..58143474- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 13 (AHRD V1 ***- Q940I0_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00000968g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|203; (*GB) gi|225427222|ref|XP_002278326.1| (e_value=4e-60) PREDICTED: uncharacterized protein LOC100267849 [Vitis vinifera];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=1e-19) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT4G17810.1 (e_value=1e-30) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr4:9906918-9907532 FORWARD LENGTH=204;; (*ITAG) Solyc06g061160.1.1 (e_value=2e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:35555299-35555898 transcript_region:SL2.40ch06:35555299..35555898+ go_terms:GO:0003700 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-** D0UTY6_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00000968g0019.1 protein AED:0.29 eAED:0.29 QI:126|0.91|0.92|1|1|1|13|653|464; (*GB) gi|225427268|ref|XP_002281297.1| (e_value=0.0) PREDICTED: AP-2 complex subunit mu [Vitis vinifera];; (*SWP) sp|P54672|AP2M_DICDI (e_value=2e-157) AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2;; (*TAIR) AT5G46630.1 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923252 FORWARD LENGTH=438;; (*ITAG) Solyc06g061150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35536609-35549278 transcript_region:SL2.40ch06:35536609..35549278+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00031294g0001.1 protein AED:0.09 eAED:0.13 QI:0|1|0.5|1|0|0|2|1127|824; (*GB) gi|225461650|ref|XP_002283115.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267539 [Vitis vinifera];; (*SWP) sp|Q8NIW7|BBP_NEUCR (e_value=3e-67) Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=bpb-1 PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=0.0) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00001009g0005.1 protein AED:0.27 eAED:0.27 QI:0|0.66|0.5|1|1|0.5|4|0|159; (*GB) gi|356534633|ref|XP_003535857.1| (e_value=1e-51) PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 2-like [Glycine max];; (*SWP) sp|Q41745|LPAT_MAIZE (e_value=2e-45) 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1;; (*TAIR) AT3G57650.1 (e_value=2e-42) | Symbols: LPAT2 | lysophosphatidyl acyltransferase 2 | chr3:21349751-21352839 FORWARD LENGTH=389;; (*ITAG) Solyc11g065890.1.1 (e_value=8e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48552169-48563226 transcript_region:SL2.40ch11:48552169..48563226+ go_terms:GO:0008152 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 ***- Q2Z1Y8_PRUMU); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0008152 NbS00014760g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|235; (*GB) gi|359479518|ref|XP_002274218.2| (e_value=4e-125) PREDICTED: 60S ribosomal protein L10a-1-like [Vitis vinifera];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=2e-125) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=1e-126) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc01g009520.2.1 (e_value=3e-136) genomic_reference:SL2.40ch01 gene_region:3780910-3784239 transcript_region:SL2.40ch01:3780910..3784239+ go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00014760g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0|0.66|1|1|3|0|284; (*GB) gi|296089090|emb|CBI38793.3| (e_value=6e-149) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZUC1|QORL_ARATH (e_value=2e-76) Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2;; (*TAIR) AT1G23740.1 (e_value=1e-77) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE LENGTH=386;; (*ITAG) Solyc05g005480.2.1 (e_value=7e-79) genomic_reference:SL2.40ch05 gene_region:352211-355615 transcript_region:SL2.40ch05:352211..355615+ go_terms:GO:0004024 functional_description:"Oxidoreductase zinc-binding dehydrogenase (AHRD V1 **** C2RQQ3_BACCE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00053142g0002.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|1|1|4|0|201; (*GB) gi|1732406|gb|AAB38748.1| (e_value=6e-66) S25-XP1 DNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q8LDC8|ERF92_ARATH (e_value=3e-42) Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2;; (*TAIR) AT3G23240.1 (e_value=3e-43) | Symbols: ERF1, ATERF1 | ethylene response factor 1 | chr3:8295705-8296361 FORWARD LENGTH=218;; (*ITAG) Solyc09g089930.1.1 (e_value=3e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64891312-64892034 transcript_region:SL2.40ch09:64891312..64892034+ go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene responsive transcription factor 1a (AHRD V1 *-** C0J9I9_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00035302g0004.1 protein AED:0.33 eAED:0.33 QI:390|1|1|1|0.6|0.33|6|267|185; (*GB) gi|225436100|ref|XP_002277937.1| (e_value=1e-58) PREDICTED: putative axial regulator YABBY 2 [Vitis vinifera];; (*SWP) sp|Q10FZ7|YAB2_ORYSJ (e_value=3e-45) Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1;; (*TAIR) AT1G08465.1 (e_value=4e-45) | Symbols: YAB2 | Plant-specific transcription factor YABBY family protein | chr1:2676033-2679382 FORWARD LENGTH=184;; (*ITAG) Solyc06g073920.2.1 (e_value=9e-60) genomic_reference:SL2.40ch06 gene_region:42038601-42044688 transcript_region:SL2.40ch06:42038601..42044688+ go_terms:GO:0003700 functional_description:"YABBY-like transcription factor CRABS CLAW-like protein (AHRD V1 **-* Q6SRZ7_ANTMA); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0003700 NbS00041414g0005.1 protein AED:0.11 eAED:0.19 QI:0|0.2|0.16|1|0.2|0.16|6|0|407; (*GB) gi|323370547|gb|ADX43928.1| (e_value=0.0) ADR1 [Solanum tuberosum];; (*SWP) sp|Q9SZA7|DRL29_ARATH (e_value=2e-127) Probable disease resistance protein At4g33300 OS=Arabidopsis thaliana GN=At4g33300 PE=2 SV=3;; (*TAIR) AT4G33300.2 (e_value=1e-128) | Symbols: ADR1-L1 | ADR1-like 1 | chr4:16051162-16054005 REVERSE LENGTH=816;; (*ITAG) Solyc04g079420.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61521424-61524959 transcript_region:SL2.40ch04:61521424..61524959+ go_terms:GO:0016301 functional_description:"Nbs-lrr, resistance protein"; GO:0016301 NbS00046880g0008.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|70; (*ITAG) Solyc11g066120.1.1 (e_value=1e-32) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48882376-48882943 transcript_region:SL2.40ch11:48882376..48882943- functional_description:"Unknown Protein (AHRD V1)"; NbS00046880g0007.1 protein AED:0.21 eAED:0.21 QI:207|1|1|1|0.76|0.71|14|1437|446; (*GB) gi|224054791|ref|XP_002298365.1| (e_value=0.0) inner membrane protein [Populus trichocarpa];; (*SWP) sp|Q9FY06|PPF1_PEA (e_value=0.0) Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2;; (*TAIR) AT2G28800.1 (e_value=0.0) | Symbols: ALB3 | 63 kDa inner membrane family protein | chr2:12356669-12359158 REVERSE LENGTH=462;; (*ITAG) Solyc11g066110.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48874291-48881169 transcript_region:SL2.40ch11:48874291..48881169+ go_terms:GO:0016021 functional_description:"Inner membrane protein oxaA (AHRD V1 *-*- B9L0L4_THERP); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0016021 NbS00000969g0004.1 protein AED:0.03 eAED:0.03 QI:192|1|1|1|1|1|4|133|505; (*GB) gi|121489791|emb|CAK18867.1| (e_value=4e-134) putative calmodulin binding protein precursor [Phillyrea latifolia];; (*TAIR) AT4G23060.1 (e_value=2e-37) | Symbols: IQD22 | IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484;; (*ITAG) Solyc08g080470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60928845-60932810 transcript_region:SL2.40ch08:60928845..60932810+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6STZ4_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbC25572732g0004.1 protein AED:0.20 eAED:0.21 QI:0|1|0|1|1|1|2|0|266; (*GB) gi|359482873|ref|XP_003632856.1| (e_value=7e-71) PREDICTED: transcription factor bHLH87-like [Vitis vinifera];; (*SWP) sp|Q8S3D2|BH087_ARATH (e_value=1e-57) Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1;; (*TAIR) AT3G21330.1 (e_value=8e-59) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:7507720-7508841 FORWARD LENGTH=373;; (*ITAG) Solyc06g062460.2.1 (e_value=1e-96) genomic_reference:SL2.40ch06 gene_region:35797457-35799604 transcript_region:SL2.40ch06:35797457..35799604- go_terms:GO:0003700 functional_description:"BHLH transcription factor-like (AHRD V1 *--* Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00027680g0009.1 protein AED:0.11 eAED:0.11 QI:3|0.75|0.4|0.8|1|1|5|0|181; (*GB) gi|356495342|ref|XP_003516537.1| (e_value=3e-84) PREDICTED: phospholipase D delta-like [Glycine max];; (*SWP) sp|Q9C5Y0|PLDD1_ARATH (e_value=1e-81) Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2;; (*TAIR) AT4G35790.3 (e_value=5e-84) | Symbols: ATPLDDELTA, PLDDELTA | phospholipase D delta | chr4:16956681-16959875 REVERSE LENGTH=693;; (*ITAG) Solyc02g061850.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:27943005-27952880 transcript_region:SL2.40ch02:27943005..27952880- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q6AVR2_ORYSJ); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0004630 NbS00027680g0008.1 protein AED:0.30 eAED:0.32 QI:0|0.85|0.75|1|1|1|8|498|394; (*GB) gi|356530491|ref|XP_003533814.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g17430-like [Glycine max];; (*SWP) sp|Q9LRP2|PT317_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=2 SV=1;; (*TAIR) AT3G17430.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:5966597-5968962 FORWARD LENGTH=375;; (*ITAG) Solyc02g088900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45399101-45405260 transcript_region:SL2.40ch02:45399101..45405260- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbC24431176g0001.1 protein AED:0.10 eAED:0.44 QI:0|0|0|1|0|0|3|0|113; (*GB) gi|224115106|ref|XP_002316941.1| (e_value=3e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXB4|Y1130_ARATH (e_value=2e-30) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1;; (*TAIR) AT4G21390.1 (e_value=5e-31) | Symbols: B120 | S-locus lectin protein kinase family protein | chr4:11394458-11397474 REVERSE LENGTH=849;; (*ITAG) Solyc07g063700.1.1 (e_value=9e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63315852-63319398 transcript_region:SL2.40ch07:63315852..63319398- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00026024g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|69; (*ITAG) Solyc05g051810.1.1 (e_value=5e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:61339656-61339874 transcript_region:SL2.40ch05:61339656..61339874+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032097g0008.1 protein AED:0.24 eAED:0.27 QI:307|0.83|0.78|1|0.55|0.73|19|35|525; (*GB) gi|15982206|emb|CAC83608.1| (e_value=0.0) Na+/H+ antiporter, isoform 2 [Solanum lycopersicum];; (*SWP) sp|Q8RWU6|NHX6_ARATH (e_value=0.0) Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3;; (*TAIR) AT1G79610.1 (e_value=0.0) | Symbols: ATNHX6, NHX6 | Na+/H+ antiporter 6 | chr1:29953089-29957070 REVERSE LENGTH=535;; (*ITAG) Solyc04g056600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53709811-53725589 transcript_region:SL2.40ch04:53709811..53725589- go_terms:GO:0015385,GO:0015386 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** Q93YH1_SOLLC); contains Interpro domain(s) IPR018409 Na+/H+ exchanger, isoform 5/6/8, conserved region "; GO:0015385,GO:0015386 NbS00008130g0003.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.42|1|0.5|0.71|7|596|320; (*GB) gi|225446697|ref|XP_002277601.1| (e_value=7e-76) PREDICTED: protein SYM1 [Vitis vinifera];; (*TAIR) AT2G42770.1 (e_value=2e-71) | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr2:17798635-17799927 REVERSE LENGTH=232;; (*ITAG) Solyc07g055340.2.1 (e_value=2e-109) genomic_reference:SL2.40ch07 gene_region:60725302-60729216 transcript_region:SL2.40ch07:60725302..60729216- go_terms:GO:0016021 functional_description:"Peroxisomal membrane protein 2 (AHRD V1 **-- B6UGE4_MAIZE); contains Interpro domain(s) IPR007248 Mpv17/PMP22 "; GO:0016021 NbS00022468g0008.1 protein AED:0.31 eAED:0.31 QI:0|0.4|0.16|0.5|1|1|6|0|221; (*GB) gi|302142778|emb|CBI19981.3| (e_value=5e-78) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5U3N0|PKHA8_DANRE (e_value=1e-13) Pleckstrin homology domain-containing family A member 8 OS=Danio rerio GN=plekha8 PE=2 SV=1;; (*TAIR) AT3G21260.3 (e_value=7e-65) | Symbols: | Glycolipid transfer protein (GLTP) family protein | chr3:7464132-7465785 REVERSE LENGTH=233;; (*ITAG) Solyc04g064920.2.1 (e_value=5e-103) genomic_reference:SL2.40ch04 gene_region:55165701-55168720 transcript_region:SL2.40ch04:55165701..55168720- go_terms:GO:0051861,GO:0017089 functional_description:"Pleckstrin homology domain containing family A member 8 (AHRD V1 **-- D2KC46_CANFA); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0051861,GO:0017089 NbS00022468g0007.1 protein AED:0.16 eAED:0.16 QI:99|1|0.87|1|0.71|0.75|8|561|297; (*GB) gi|225457739|ref|XP_002278020.1| (e_value=3e-120) PREDICTED: uncharacterized protein LOC100253998 [Vitis vinifera];; (*TAIR) AT1G21350.3 (e_value=3e-113) | Symbols: | Thioredoxin superfamily protein | chr1:7477376-7479012 REVERSE LENGTH=252;; (*ITAG) Solyc04g064930.2.1 (e_value=6e-141) genomic_reference:SL2.40ch04 gene_region:55198897-55205258 transcript_region:SL2.40ch04:55198897..55205258+ go_terms:GO:0016491,GO:0045454 functional_description:"Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (AHRD V1 ***- D5BYP3_NITHN); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454 NbS00011193g0009.1 protein AED:0.38 eAED:0.39 QI:0|0.5|0.66|1|0.5|0.33|3|314|77; (*GB) gi|51104307|gb|AAT96699.1| (e_value=3e-29) putative receptor-like protein kinase 1 [Musa acuminata];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=1e-13) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=2e-25) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052230.2.1 (e_value=2e-29) genomic_reference:SL2.40ch07 gene_region:58046650-58049670 transcript_region:SL2.40ch07:58046650..58049670- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00011193g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.90|0.83|1|1|1|12|197|521; (*GB) gi|225461399|ref|XP_002284849.1| (e_value=0.0) PREDICTED: nucleolar GTP-binding protein 2-like [Vitis vinifera];; (*SWP) sp|Q99LH1|NOG2_MOUSE (e_value=6e-177) Nucleolar GTP-binding protein 2 OS=Mus musculus GN=Gnl2 PE=2 SV=2;; (*TAIR) AT1G52980.1 (e_value=0.0) | Symbols: | GTP-binding family protein | chr1:19737493-19740201 FORWARD LENGTH=576;; (*ITAG) Solyc07g063270.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63008778-63014711 transcript_region:SL2.40ch07:63008778..63014711- go_terms:GO:0005515,GO:0003924 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B6TMG1_MAIZE); contains Interpro domain(s) IPR012971 NGP1, N-terminal "; GO:0005515,GO:0003924 NbS00011193g0006.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|81; (*ITAG) Solyc07g063290.2.1 (e_value=5e-22) genomic_reference:SL2.40ch07 gene_region:63018202-63022291 transcript_region:SL2.40ch07:63018202..63022291- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019481 Transcription factor TFIIIC, tau55-related "; NbS00011193g0014.1 protein AED:0.56 eAED:0.91 QI:0|0|0|0.8|1|1|5|0|127; (*GB) gi|297834408|ref|XP_002885086.1| (e_value=7e-16) hypothetical protein ARALYDRAFT_478984 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G15420.1 (e_value=5e-18) | Symbols: | Transcription factor TFIIIC, tau55-related protein | chr3:5207704-5208289 REVERSE LENGTH=107;; (*ITAG) Solyc07g063290.2.1 (e_value=7e-25) genomic_reference:SL2.40ch07 gene_region:63018202-63022291 transcript_region:SL2.40ch07:63018202..63022291- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019481 Transcription factor TFIIIC, tau55-related "; NbS00014113g0017.1 protein AED:0.17 eAED:0.18 QI:6|0.82|0.72|1|0.70|0.72|18|0|719; (*GB) gi|296085838|emb|CBI31162.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT1G06840.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc10g074890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57914822-57922140 transcript_region:SL2.40ch10:57914822..57922140- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00014113g0020.1 protein AED:0.19 eAED:0.19 QI:590|0.72|0.66|1|0.36|0.41|12|239|605; (*GB) gi|359480978|ref|XP_003632548.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g37450-like [Vitis vinifera];; (*SWP) sp|C0LGU1|Y5374_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1;; (*TAIR) AT1G06840.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc10g074900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57929897-57941645 transcript_region:SL2.40ch10:57929897..57941645- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014113g0018.1 protein AED:0.29 eAED:0.29 QI:90|0.62|0.55|0.88|0.37|0.33|9|0|245; (*GB) gi|356566814|ref|XP_003551622.1| (e_value=3e-100) PREDICTED: acetyltransferase NSI-like [Glycine max];; (*SWP) sp|Q5KQI6|NSI_ORYSJ (e_value=9e-87) Probable acetyltransferase NSI OS=Oryza sativa subsp. japonica GN=NSI PE=2 SV=1;; (*TAIR) AT1G32070.3 (e_value=3e-88) | Symbols: ATNSI, NSI | nuclear shuttle interacting | chr1:11534851-11536289 REVERSE LENGTH=257;; (*ITAG) Solyc10g074910.1.1 (e_value=1e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57945511-57956476 transcript_region:SL2.40ch10:57945511..57956476- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 *-*- Q31BX2_PROM9); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00014113g0019.1 protein AED:0.30 eAED:0.39 QI:0|0.75|0.4|1|0|0|5|128|165; (*GB) gi|359480978|ref|XP_003632548.1| (e_value=1e-41) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g37450-like [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=5e-42) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT1G06840.1 (e_value=4e-43) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc10g074900.1.1 (e_value=4e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57929897-57941645 transcript_region:SL2.40ch10:57929897..57941645- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00014113g0011.1 protein AED:0.68 eAED:0.80 QI:0|0|0|0.66|1|1|3|0|111 NbS00025577g0001.1 protein AED:0.08 eAED:0.10 QI:0|0.64|0.5|0.94|1|1|18|0|2050; (*GB) gi|297741295|emb|CBI32426.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CM30|ATG2_CRYNJ (e_value=2e-51) Autophagy-related protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG2 PE=3 SV=1;; (*TAIR) AT3G19190.1 (e_value=0.0) | Symbols: ATATG2, ATG2 | autophagy 2 | chr3:6639879-6648274 FORWARD LENGTH=1839;; (*ITAG) Solyc01g108160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87285443-87302810 transcript_region:SL2.40ch01:87285443..87302810+ functional_description:"Autophagy-related protein 2 (AHRD V1 *-*- C1GCV2_PARBD); contains Interpro domain(s) IPR015412 ATG2, C-terminal "; NbS00025577g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|89; (*GB) gi|224123478|ref|XP_002330324.1| (e_value=3e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19200.1 (e_value=3e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34419.1); Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6649478-6650006 REVERSE LENGTH=143;; (*ITAG) Solyc01g108170.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:87304636-87305554 transcript_region:SL2.40ch01:87304636..87305554- functional_description:"Unknown Protein (AHRD V1)"; NbS00036369g0005.1 protein AED:0.27 eAED:0.27 QI:43|0.66|0.5|0.75|1|1|4|0|65 NbS00036369g0007.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0.5|0.33|3|0|213; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-54) hypothetical protein [Nicotiana tabacum]; NbS00025566g0002.1 protein AED:0.42 eAED:0.66 QI:0|0|0|0.5|0|0|2|0|84 NbS00025566g0001.1 protein AED:0.36 eAED:1.00 QI:21|0|0|1|0|0|2|144|27 NbS00016487g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|1|0.66|0.5|4|0|247; (*GB) gi|359495999|ref|XP_003635130.1| (e_value=7e-59) PREDICTED: putative xyloglucan endotransglucosylase/hydrolase protein 1-like [Vitis vinifera];; (*SWP) sp|Q9SV61|XTH1_ARATH (e_value=2e-50) Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=2;; (*TAIR) AT4G13080.1 (e_value=1e-51) | Symbols: XTH1 | xyloglucan endotransglucosylase/hydrolase 1 | chr4:7626612-7628367 REVERSE LENGTH=292;; (*ITAG) Solyc06g083400.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45096186-45098342 transcript_region:SL2.40ch06:45096186..45098342- go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** Q2MK81_9ROSA); contains Interpro domain(s) IPR000757 Glycoside hydrolase, family 16 "; GO:0016798 NbS00016487g0009.1 protein AED:0.25 eAED:0.25 QI:267|0.66|0.75|1|0.66|0.5|4|271|192; (*GB) gi|359496001|ref|XP_002265336.2| (e_value=3e-36) PREDICTED: RPM1-interacting protein 4-like [Vitis vinifera];; (*SWP) sp|Q8GYN5|RIN4_ARATH (e_value=1e-26) RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1;; (*TAIR) AT3G25070.1 (e_value=1e-27) | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:9132458-9133747 FORWARD LENGTH=211;; (*ITAG) Solyc06g083390.2.1 (e_value=2e-70) genomic_reference:SL2.40ch06 gene_region:45091916-45094287 transcript_region:SL2.40ch06:45091916..45094287- go_terms:GO:0005515 functional_description:"RPM1 interacting protein 4 transcript 2 (AHRD V1 ***- D2J0Y3_9ASTR); contains Interpro domain(s) IPR008700 Defence response, Rin4 "; GO:0005515 NbS00016487g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|1|1|7|366|436; (*GB) gi|345547467|gb|AEO12091.1| (e_value=0.0) acyl-ACP thioesterase [Capsicum frutescens];; (*SWP) sp|Q42712|FATA_CORSA (e_value=3e-171) Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1;; (*TAIR) AT4G13050.1 (e_value=3e-171) | Symbols: | Acyl-ACP thioesterase | chr4:7617739-7619355 FORWARD LENGTH=367;; (*ITAG) Solyc06g083380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45086448-45091016 transcript_region:SL2.40ch06:45086448..45091016+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** D7RU32_CAPAN); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00026713g0004.1 protein AED:0.12 eAED:0.13 QI:0|1|0|1|0.5|0.33|3|0|486; (*GB) gi|225424960|ref|XP_002264952.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Vitis vinifera];; (*SWP) sp|O65440|BAME3_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3;; (*TAIR) AT4G20270.1 (e_value=0.0) | Symbols: BAM3 | Leucine-rich receptor-like protein kinase family protein | chr4:10949822-10952924 FORWARD LENGTH=992;; (*ITAG) Solyc01g080770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72507024-72510368 transcript_region:SL2.40ch01:72507024..72510368- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012328g0005.1 protein AED:0.57 eAED:0.57 QI:0|0|0|0.5|1|1|2|0|60 NbS00012328g0004.1 protein AED:0.11 eAED:0.11 QI:80|0.87|0.88|1|0.87|0.77|9|0|715; (*GB) gi|225452458|ref|XP_002274361.1| (e_value=0.0) PREDICTED: L-aspartate oxidase 1-like [Vitis vinifera];; (*SWP) sp|Q8XWM7|NADB1_RALSO (e_value=3e-134) L-aspartate oxidase 1 OS=Ralstonia solanacearum (strain GMI1000) GN=nadB1 PE=3 SV=1;; (*TAIR) AT5G14760.1 (e_value=0.0) | Symbols: AO | L-aspartate oxidase | chr5:4769133-4772012 FORWARD LENGTH=651;; (*ITAG) Solyc12g014530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5498306-5503348 transcript_region:SL2.40ch12:5498306..5503348- go_terms:GO:0005737,GO:0016491,GO:0055114 functional_description:"L-aspartate oxidase (AHRD V1 ***- D7M6M9_ARALY); contains Interpro domain(s) IPR005288 L-aspartate oxidase "; GO:0005737,GO:0016491,GO:0055114 NbS00039439g0007.1 protein AED:0.17 eAED:0.18 QI:150|1|1|1|1|1|6|177|312; (*GB) gi|359479187|ref|XP_002270352.2| (e_value=3e-136) PREDICTED: uncharacterized protein LOC100259925 [Vitis vinifera];; (*SWP) sp|Q5RAZ5|NSE1_PONAB (e_value=1e-17) Non-structural maintenance of chromosomes element 1 homolog OS=Pongo abelii GN=NSMCE1 PE=2 SV=1;; (*TAIR) AT5G21140.1 (e_value=2e-112) | Symbols: emb1379 | embryo defective 1379 | chr5:7187416-7189521 REVERSE LENGTH=312;; (*ITAG) Solyc01g006210.2.1 (e_value=6e-179) genomic_reference:SL2.40ch01 gene_region:833604-837884 transcript_region:SL2.40ch01:833604..837884- functional_description:"Non-structural maintenance of chromosomes element 1 homolog (AHRD V1 ***- B5X8H0_SALSA); contains Interpro domain(s) IPR011513 Nse1 non-SMC component of SMC5-6 complex "; NbS00039439g0006.1 protein AED:0.29 eAED:0.29 QI:0|0.8|0.72|0.90|0.4|0.36|11|327|335; (*GB) gi|359489946|ref|XP_002268035.2| (e_value=1e-131) PREDICTED: histone-lysine N-methyltransferase ASHH3-like [Vitis vinifera];; (*SWP) sp|Q945S8|ASHH3_ARATH (e_value=3e-112) Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana GN=ASHH3 PE=2 SV=2;; (*TAIR) AT2G44150.1 (e_value=2e-113) | Symbols: ASHH3, SDG7 | histone-lysine N-methyltransferase ASHH3 | chr2:18258863-18261003 FORWARD LENGTH=363;; (*ITAG) Solyc01g006220.2.1 (e_value=6e-148) genomic_reference:SL2.40ch01 gene_region:839826-851722 transcript_region:SL2.40ch01:839826..851722- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- C1G685_PARBD); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00033372g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|71 NbS00010007g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.81|0.75|1|1|1|12|0|1258; (*GB) gi|225463358|ref|XP_002271185.1| (e_value=0.0) PREDICTED: ABC transporter B family member 9-like [Vitis vinifera];; (*SWP) sp|Q9M0M2|AB9B_ARATH (e_value=0.0) ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=2 SV=2;; (*TAIR) AT4G18050.1 (e_value=0.0) | Symbols: PGP9 | P-glycoprotein 9 | chr4:10022205-10027280 FORWARD LENGTH=1236;; (*ITAG) Solyc03g005860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:581458-589104 transcript_region:SL2.40ch03:581458..589104+ go_terms:GO:0008559 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_DESPS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00010007g0015.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|0.5|1|3|0|112; (*GB) gi|255557447|ref|XP_002519754.1| (e_value=2e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29520.1 (e_value=4e-34) | Symbols: | AWPM-19-like family protein | chr1:10323735-10324525 FORWARD LENGTH=158;; (*ITAG) Solyc02g071310.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:35368618-35369907 transcript_region:SL2.40ch02:35368618..35369907+ functional_description:"Plasma membrane associated protein (AHRD V1 ***- B4FLA8_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00010007g0020.1 protein AED:0.39 eAED:0.39 QI:0|0.33|0.5|1|0.66|0.75|4|0|180; (*GB) gi|255556095|ref|XP_002519082.1| (e_value=4e-87) phosphatidylinositol 4-kinase, putative [Ricinus communis];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=4e-86) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=3e-87) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043120.1.1 (e_value=8e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34840773-34854035 transcript_region:SL2.40ch11:34840773..34854035- go_terms:GO:0004430,GO:0035091 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 **** D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0004430,GO:0035091 NbS00010007g0019.1 protein AED:0.30 eAED:0.42 QI:0|0.33|0.14|1|0.5|0.42|7|0|326; (*GB) gi|255556095|ref|XP_002519082.1| (e_value=9e-70) phosphatidylinositol 4-kinase, putative [Ricinus communis];; (*SWP) sp|Q9SXA1|P4KA1_ARATH (e_value=2e-66) Phosphatidylinositol 4-kinase alpha OS=Arabidopsis thaliana GN=PI4KALPHA1 PE=1 SV=2;; (*TAIR) AT1G49340.1 (e_value=1e-67) | Symbols: ATPI4K ALPHA | Phosphatidylinositol 3- and 4-kinase family protein | chr1:18252355-18263967 FORWARD LENGTH=2028;; (*ITAG) Solyc11g043120.1.1 (e_value=3e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34840773-34854035 transcript_region:SL2.40ch11:34840773..34854035- go_terms:GO:0004430,GO:0035091 functional_description:"Phosphatidylinositol 4-kinase (AHRD V1 **** D7KE30_ARALY); contains Interpro domain(s) IPR015433 Phosphatidylinositol Kinase "; GO:0004430,GO:0035091 NbS00023344g0004.1 protein AED:0.10 eAED:0.10 QI:305|1|1|1|1|1|2|424|514; (*GB) gi|359477170|ref|XP_002272460.2| (e_value=5e-135) PREDICTED: uncharacterized protein LOC100255130 [Vitis vinifera];; (*SWP) sp|Q80ZX8|SPAG1_MOUSE (e_value=1e-11) Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1;; (*TAIR) AT3G16760.1 (e_value=8e-111) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:5703213-5705080 FORWARD LENGTH=475;; (*ITAG) Solyc01g066050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:65381118-65385261 transcript_region:SL2.40ch01:65381118..65385261- go_terms:GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase FKBP5 (AHRD V1 *--- FKBP5_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00049083g0003.1 protein AED:0.37 eAED:0.39 QI:87|0.66|0.57|1|0.83|0.85|7|0|325; (*GB) gi|224071868|ref|XP_002303586.1| (e_value=2e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=1e-155) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT1G63500.1 (e_value=7e-158) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr1:23556015-23558403 FORWARD LENGTH=487;; (*ITAG) Solyc12g099830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65155426-65160628 transcript_region:SL2.40ch12:65155426..65160628- go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase 2 (AHRD V1 ***- RCH2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00019101g0009.1 protein AED:0.02 eAED:0.02 QI:284|1|0.5|1|0|0|2|172|31 NbS00019101g0013.1 protein AED:0.27 eAED:0.27 QI:125|1|1|1|0|0.5|2|335|187; (*GB) gi|62856979|gb|AAY16440.1| (e_value=2e-49) squamosa promoter binding-like protein [Betula platyphylla];; (*SWP) sp|Q9S7A9|SPL4_ARATH (e_value=4e-31) Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1;; (*TAIR) AT1G53160.1 (e_value=3e-32) | Symbols: SPL4 | squamosa promoter binding protein-like 4 | chr1:19806478-19807080 FORWARD LENGTH=174;; (*ITAG) Solyc07g053810.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:59554791-59557127 transcript_region:SL2.40ch07:59554791..59557127- go_terms:GO:0005634 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00019101g0001.1 protein AED:0.03 eAED:0.03 QI:366|1|1|1|0.66|0.5|4|355|384; (*GB) gi|255553691|ref|XP_002517886.1| (e_value=0.0) ADP,ATP carrier protein, putative [Ricinus communis];; (*SWP) sp|O49447|ADT3_ARATH (e_value=0.0) ADP,ATP carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=AAC3 PE=1 SV=1;; (*TAIR) AT4G28390.1 (e_value=0.0) | Symbols: AAC3, ATAAC3 | ADP/ATP carrier 3 | chr4:14041486-14042781 REVERSE LENGTH=379;; (*ITAG) Solyc07g053830.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59571961-59574722 transcript_region:SL2.40ch07:59571961..59574722+ go_terms:GO:0005471 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 **** Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005471 NbS00019101g0008.1 protein AED:0.10 eAED:0.10 QI:47|0.92|0.86|1|0.78|0.73|15|22|536; (*GB) gi|359485399|ref|XP_002274770.2| (e_value=0.0) PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1-like [Vitis vinifera];; (*SWP) sp|P41695|BUB1_YEAST (e_value=1e-40) Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2;; (*TAIR) AT2G20635.1 (e_value=0.0) | Symbols: | ATP binding;protein kinases;protein serine/threonine kinases | chr2:8900410-8903384 FORWARD LENGTH=525;; (*ITAG) Solyc07g053820.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59563736-59569953 transcript_region:SL2.40ch07:59563736..59569953+ go_terms:GO:0006468 functional_description:"Checkpoint serine/threonine-protein kinase BUB1 (AHRD V1 *--- B3LI47_YEAS1); contains Interpro domain(s) IPR015661 Mitotic checkpoint serine/threonine protein kinase, Bub1 "; GO:0006468 NbS00033619g0010.1 protein AED:0.38 eAED:0.38 QI:211|1|0.5|1|0.33|0.25|4|0|93; (*GB) gi|296086695|emb|CBI32330.3| (e_value=7e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|O35900|LSM2_MOUSE (e_value=2e-44) U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1;; (*TAIR) AT1G03330.1 (e_value=5e-61) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:818161-819297 REVERSE LENGTH=93;; (*ITAG) Solyc09g072970.2.1 (e_value=9e-63) genomic_reference:SL2.40ch09 gene_region:61133957-61139157 transcript_region:SL2.40ch09:61133957..61139157- go_terms:GO:0019901 functional_description:"U6 snRNA-associated Sm-like protein LSm2 (AHRD V1 **-- B9EPQ0_SALSA); contains Interpro domain(s) IPR016654 U6 snRNA-associated Sm-like protein LSm2 "; GO:0019901 NbS00033619g0007.1 protein AED:0.20 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|202; (*ITAG) Solyc06g084370.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:45798612-45799007 transcript_region:SL2.40ch06:45798612..45799007+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033619g0003.1 protein AED:0.31 eAED:0.33 QI:0|0|0|1|1|1|2|0|222; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-30) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00033619g0011.1 protein AED:0.30 eAED:0.35 QI:361|0.81|0.83|1|0.63|0.58|12|308|383; (*GB) gi|225436896|ref|XP_002274008.1| (e_value=0.0) PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1 [Vitis vinifera];; (*SWP) sp|Q5M7X9|MUL1A_DANRE (e_value=5e-23) Mitochondrial ubiquitin ligase activator of nfkb 1-A OS=Danio rerio GN=mul1a PE=2 SV=1;; (*TAIR) AT1G63900.1 (e_value=4e-170) | Symbols: DAL1 | E3 Ubiquitin ligase family protein | chr1:23717056-23719086 FORWARD LENGTH=343;; (*ITAG) Solyc06g084360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45789645-45797146 transcript_region:SL2.40ch06:45789645..45797146+ go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- B0XJ37_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00047397g0006.1 protein AED:0.13 eAED:0.14 QI:412|0.8|0.83|1|0.8|0.83|6|659|570; (*GB) gi|302143562|emb|CBI22123.3| (e_value=7e-96) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PKG0|LARP1_HUMAN (e_value=4e-14) La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2;; (*TAIR) AT4G35890.1 (e_value=4e-50) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr4:16997433-17000410 FORWARD LENGTH=523;; (*ITAG) Solyc02g061960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28083055-28088915 transcript_region:SL2.40ch02:28083055..28088915+ functional_description:"La related protein-like (AHRD V1 *--- Q5NBG8_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00024233g0008.1 protein AED:0.09 eAED:0.10 QI:196|1|0.33|1|1|1|3|0|473; (*GB) gi|225435325|ref|XP_002285171.1| (e_value=2e-132) PREDICTED: double-stranded RNA-binding protein 2-like [Vitis vinifera];; (*SWP) sp|Q9SKN2|DRB2_ARATH (e_value=2e-107) Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1;; (*TAIR) AT2G28380.1 (e_value=2e-108) | Symbols: DRB2 | dsRNA-binding protein 2 | chr2:12134098-12135915 REVERSE LENGTH=434;; (*ITAG) Solyc05g056100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64618011-64624535 transcript_region:SL2.40ch05:64618011..64624535+ go_terms:GO:0005515,GO:0003725 functional_description:"Double-stranded RNA binding protein (AHRD V1 *-** A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005515,GO:0003725 NbS00024233g0010.1 protein AED:0.32 eAED:0.39 QI:0|0|0|1|0|0.33|3|0|223; (*GB) gi|224112977|ref|XP_002316350.1| (e_value=2e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT2G35790.1 (e_value=7e-76) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr2:15040735-15041976 FORWARD LENGTH=238;; (*ITAG) Solyc05g056090.2.1 (e_value=1e-115) genomic_reference:SL2.40ch05 gene_region:64613030-64615907 transcript_region:SL2.40ch05:64613030..64615907+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009724 Protein of unknown function DUF1301 "; NbS00024233g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|171; (*GB) gi|224097907|ref|XP_002311091.1| (e_value=2e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CYC6|DCP2_MOUSE (e_value=1e-19) m7GpppN-mRNA hydrolase OS=Mus musculus GN=Dcp2 PE=1 SV=2;; (*TAIR) AT5G13570.2 (e_value=5e-58) | Symbols: DCP2 | decapping 2 | chr5:4367532-4369992 FORWARD LENGTH=386;; (*ITAG) Solyc05g056110.2.1 (e_value=8e-113) genomic_reference:SL2.40ch05 gene_region:64647274-64657456 transcript_region:SL2.40ch05:64647274..64657456- go_terms:GO:0042803 functional_description:"mRNA-decapping enzyme 2 (AHRD V1 ***- D3BA13_POLPA); contains Interpro domain(s) IPR007722 Dcp2, box A "; GO:0042803 NbS00014583g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|224122102|ref|XP_002318753.1| (e_value=9e-38) SAUR family protein [Populus trichocarpa];; (*TAIR) AT5G50760.1 (e_value=2e-27) | Symbols: | SAUR-like auxin-responsive protein family | chr5:20644780-20645331 FORWARD LENGTH=183;; (*ITAG) Solyc03g097510.1.1 (e_value=3e-70) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:53290675-53291151 transcript_region:SL2.40ch03:53290675..53291151- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00004351g0005.1 protein AED:0.20 eAED:0.20 QI:261|0.4|0.33|0.83|0.8|0.66|6|0|598; (*GB) gi|359496932|ref|XP_003635376.1| (e_value=5e-172) PREDICTED: uncharacterized protein LOC100853530 [Vitis vinifera];; (*TAIR) AT2G22840.1 (e_value=3e-107) | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 | chr2:9728841-9731141 FORWARD LENGTH=530;; (*ITAG) Solyc02g092070.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47855277-47859821 transcript_region:SL2.40ch02:47855277..47859821+ go_terms:GO:0005515,GO:0016563 functional_description:"Growth regulating factor 1 (Fragment) (AHRD V1 *--- A6MZS4_ORYSI); contains Interpro domain(s) IPR014977 WRC "; GO:0005515,GO:0016563 NbS00004351g0006.1 protein AED:0.53 eAED:0.53 QI:46|0|0.5|0.5|0|0|2|0|85 NbS00004351g0101.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|82 NbS00004351g0104.1 protein AED:0.42 eAED:0.70 QI:0|0|0|0.66|1|1|3|0|180 NbS00058491g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.4|5|0|460; (*GB) gi|255540837|ref|XP_002511483.1| (e_value=7e-86) hypothetical protein RCOM_1512920 [Ricinus communis];; (*TAIR) AT1G18990.1 (e_value=2e-42) | Symbols: | Protein of unknown function, DUF593 | chr1:6558778-6560432 REVERSE LENGTH=524;; (*ITAG) Solyc06g071190.2.1 (e_value=1e-154) genomic_reference:SL2.40ch06 gene_region:40162763-40166109 transcript_region:SL2.40ch06:40162763..40166109+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00012823g0002.1 protein AED:0.23 eAED:0.26 QI:0|0.92|0.85|1|1|1|14|370|489; (*GB) gi|225438141|ref|XP_002278528.1| (e_value=0.0) PREDICTED: mitochondrial import inner membrane translocase subunit tim44-like [Vitis vinifera];; (*SWP) sp|O35857|TIM44_MOUSE (e_value=2e-21) Mitochondrial import inner membrane translocase subunit TIM44 OS=Mus musculus GN=Timm44 PE=2 SV=2;; (*TAIR) AT2G20510.1 (e_value=3e-169) | Symbols: ATTIM44-1, TIM44-1 | translocase inner membrane subunit 44-1 | chr2:8836018-8838598 REVERSE LENGTH=472;; (*ITAG) Solyc01g098230.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80566796-80574909 transcript_region:SL2.40ch01:80566796..80574909+ go_terms:GO:0015462 functional_description:"Mitochondrial import inner membrane translocase subunit TIM44 (AHRD V1 ***- D7L3P3_ARALY); contains Interpro domain(s) IPR007379 Mitochondrial inner membrane translocase complex, subunit Tim44-related "; GO:0015462 NbS00012521g0004.1 protein AED:0.25 eAED:0.25 QI:109|0.71|0.62|1|0.71|0.62|8|230|452; (*GB) gi|224125168|ref|XP_002329910.1| (e_value=5e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C8U0|GSXL5_ARATH (e_value=5e-147) Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis thaliana GN=At1g63370 PE=2 SV=2;; (*TAIR) AT1G63370.1 (e_value=4e-148) | Symbols: | Flavin-binding monooxygenase family protein | chr1:23503205-23505358 REVERSE LENGTH=450;; (*ITAG) Solyc06g060610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34997917-35003219 transcript_region:SL2.40ch06:34997917..35003219- go_terms:GO:0004499 functional_description:"Flavin-containing monooxygenase family protein (AHRD V1 **** D7KUN8_ARALY); contains Interpro domain(s) IPR000960 Flavin-containing monooxygenase FMO "; GO:0004499 NbS00037219g0007.1 protein AED:0.17 eAED:0.17 QI:497|0.76|0.72|1|0.64|0.72|18|197|800; (*GB) gi|255548760|ref|XP_002515436.1| (e_value=3e-80) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q9HFF5|PDS5_SCHPO (e_value=9e-15) Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1;; (*TAIR) AT4G31880.2 (e_value=3e-76) | Symbols: | LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). | chr4:15419435-15423939 REVERSE LENGTH=872;; (*ITAG) Solyc03g116920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60238986-60249100 transcript_region:SL2.40ch03:60238986..60249100- functional_description:"Sister chromatid cohesion protein PDS5 homolog A (AHRD V1 *--- PDS5A_CHICK)"; NbS00037219g0006.1 protein AED:0.31 eAED:0.39 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|11466011|ref|NP_054553.1| (e_value=9e-23) hypothetical protein NitaCp079 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=6e-24) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=9e-24) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc10g062330.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:56406039-56406944 transcript_region:SL2.40ch10:56406039..56406944- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 **-- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00029384g0014.1 protein AED:0.00 eAED:0.00 QI:125|1|1|1|0.5|0.2|5|309|151; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00029384g0016.1 protein AED:0.08 eAED:0.08 QI:0|0.5|0.33|1|0.5|0.66|3|0|352; (*GB) gi|297745814|emb|CBI15870.3| (e_value=2e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SIQ2|GDL44_ARATH (e_value=2e-122) GDSL esterase/lipase At2g31550 OS=Arabidopsis thaliana GN=At2g31550 PE=2 SV=3;; (*TAIR) AT2G24560.1 (e_value=2e-123) | Symbols: | GDSL-like Lipase/Acylhydrolase family protein | chr2:10431537-10432933 FORWARD LENGTH=363;; (*ITAG) Solyc04g007440.1.1 (e_value=5e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1108529-1111896 transcript_region:SL2.40ch04:1108529..1111896+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g58430 (AHRD V1 ***- GDL23_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00029384g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|154; (*ITAG) Solyc07g032700.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00029384g0018.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.5|1|0.66|0.8|10|0|537; (*GB) gi|356547835|ref|XP_003542310.1| (e_value=2e-125) PREDICTED: protein WAX2-like [Glycine max];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=2e-117) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT5G57800.1 (e_value=1e-118) | Symbols: FLP1, YRE, CER3, WAX2 | Fatty acid hydroxylase superfamily | chr5:23420589-23423832 FORWARD LENGTH=632;; (*ITAG) Solyc07g006300.2.1 (e_value=5e-130) genomic_reference:SL2.40ch07 gene_region:1096789-1105446 transcript_region:SL2.40ch07:1096789..1105446+ go_terms:GO:0009924 functional_description:"CER1 protein (Fragment) (AHRD V1 *--- Q0WLZ2_ARATH); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00044852g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|0|0|3|0|462; (*GB) gi|224144306|ref|XP_002325254.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q940V3|U91A1_ARATH (e_value=9e-154) UDP-glycosyltransferase 91A1 OS=Arabidopsis thaliana GN=UGT91A1 PE=2 SV=1;; (*TAIR) AT2G22590.1 (e_value=7e-155) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:9593012-9594424 FORWARD LENGTH=470;; (*ITAG) Solyc11g010810.1.1 (e_value=6e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3828764-3830176 transcript_region:SL2.40ch11:3828764..3830176+ go_terms:GO:0008152 functional_description:"Glucosyltransferase (AHRD V1 ***- A1YM58_IPOBA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00029689g0001.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.33|1|1|1|3|0|411; (*GB) gi|225438483|ref|XP_002278249.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 12-like [Vitis vinifera];; (*SWP) sp|Q54UJ0|PSD12_DICDI (e_value=7e-110) 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1;; (*TAIR) AT5G09900.2 (e_value=0.0) | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory subunit, putative (RPN5) | chr5:3089462-3092434 REVERSE LENGTH=442;; (*ITAG) Solyc04g051370.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49587657-49596538 transcript_region:SL2.40ch04:49587657..49596538- go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 12 (AHRD V1 ***- B5X386_SALSA); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515,GO:0004175 NbS00027047g0004.1 protein AED:0.09 eAED:0.11 QI:0|0.6|0.36|0.90|1|1|11|0|1318; (*GB) gi|147814937|emb|CAN74744.1| (e_value=0.0) hypothetical protein VITISV_033250 [Vitis vinifera];; (*SWP) sp|Q15269|PWP2_HUMAN (e_value=0.0) Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1 SV=2;; (*TAIR) AT1G15440.1 (e_value=0.0) | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2 | chr1:5306159-5309460 REVERSE LENGTH=900;; (*ITAG) Solyc03g120080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62626896-62632505 transcript_region:SL2.40ch03:62626896..62632505+ go_terms:GO:0030515 functional_description:"Periodic tryptophan protein 2 (AHRD V1 **-- D0MSR7_PHYIN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00027047g0006.1 protein AED:0.11 eAED:0.16 QI:0|0.83|0.85|1|1|1|7|369|589; (*GB) gi|225442799|ref|XP_002285259.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242968 [Vitis vinifera];; (*TAIR) AT1G80280.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:30183839-30186141 REVERSE LENGTH=647;; (*ITAG) Solyc03g119990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62556422-62561636 transcript_region:SL2.40ch03:62556422..62561636+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7KX74_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00027047g0023.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.33|0.66|1|1|3|194|370; (*GB) gi|255553049|ref|XP_002517567.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11420.1 (e_value=1e-178) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc12g042930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:43822815-43825801 transcript_region:SL2.40ch12:43822815..43825801- functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00027047g0022.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.83|1|1|1|6|0|308; (*GB) gi|224106285|ref|XP_002333702.1| (e_value=1e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54LT8|STRAP_DICDI (e_value=4e-72) Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1;; (*TAIR) AT3G15610.1 (e_value=6e-144) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:5291076-5292796 REVERSE LENGTH=341;; (*ITAG) Solyc03g120010.2.1 (e_value=1e-164) genomic_reference:SL2.40ch03 gene_region:62568976-62573796 transcript_region:SL2.40ch03:62568976..62573796- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 **-- B6SSB6_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00042084g0005.1 protein AED:0.45 eAED:0.47 QI:0|0|0|1|1|1|5|0|126 NbS00006585g0011.1 protein AED:0.08 eAED:0.08 QI:194|0.71|0.62|1|0.71|0.62|8|0|548; (*GB) gi|297737612|emb|CBI26813.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L612|MACP1_ARATH (e_value=0.0) MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1;; (*TAIR) AT1G14780.1 (e_value=0.0) | Symbols: | MAC/Perforin domain-containing protein | chr1:5091020-5093873 FORWARD LENGTH=627;; (*ITAG) Solyc01g005220.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:173559-180636 transcript_region:SL2.40ch01:173559..180636+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA18_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00006585g0004.1 protein AED:0.76 eAED:0.92 QI:0|0|0|1|1|1|3|0|157 NbS00034699g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0.4|0.8|0.25|0.2|5|0|168; (*GB) gi|351723139|ref|NP_001238292.1| (e_value=6e-62) uncharacterized protein LOC100306402 [Glycine max];; (*SWP) sp|A2RVT6|RTNLN_ARATH (e_value=8e-49) Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2;; (*TAIR) AT3G18260.1 (e_value=8e-45) | Symbols: | Reticulon family protein | chr3:6260328-6261504 REVERSE LENGTH=225;; (*ITAG) Solyc05g008890.2.1 (e_value=4e-99) genomic_reference:SL2.40ch05 gene_region:3102838-3104660 transcript_region:SL2.40ch05:3102838..3104660- go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- B2WS91_9BRAS); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00028935g0011.1 protein AED:0.31 eAED:0.31 QI:0|1|0|1|1|1|2|0|131; (*GB) gi|29825611|gb|AAO92303.1| (e_value=8e-84) gibberellin 2-oxidase 1 [Nicotiana sylvestris];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=3e-69) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.1 (e_value=2e-70) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11306601 FORWARD LENGTH=338;; (*ITAG) Solyc02g080120.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39009892-39014517 transcript_region:SL2.40ch02:39009892..39014517+ go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00028935g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.25|0.4|0.8|0.25|0.2|5|0|237; (*GB) gi|356575805|ref|XP_003556027.1| (e_value=3e-95) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8-like [Glycine max];; (*SWP) sp|Q8L9A9|XTH8_ARATH (e_value=1e-87) Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2;; (*TAIR) AT1G11545.1 (e_value=7e-89) | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase 8 | chr1:3878689-3880286 REVERSE LENGTH=305;; (*ITAG) Solyc03g031800.2.1 (e_value=2e-108) genomic_reference:SL2.40ch03 gene_region:8562793-8564971 transcript_region:SL2.40ch03:8562793..8564971+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** C0IRG0_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00028935g0012.1 protein AED:0.28 eAED:0.34 QI:0|0|0|1|0|0|2|0|153; (*GB) gi|29825611|gb|AAO92303.1| (e_value=5e-72) gibberellin 2-oxidase 1 [Nicotiana sylvestris];; (*SWP) sp|O49561|G2OX8_ARATH (e_value=2e-48) Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2;; (*TAIR) AT4G21200.3 (e_value=1e-51) | Symbols: ATGA2OX8, GA2OX8 | gibberellin 2-oxidase 8 | chr4:11302751-11304032 FORWARD LENGTH=181;; (*ITAG) Solyc10g005360.2.1 (e_value=1e-73) genomic_reference:SL2.40ch10 gene_region:261366-264169 transcript_region:SL2.40ch10:261366..264169- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* B6SZM8_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00047940g0013.1 protein AED:0.37 eAED:0.37 QI:159|0.5|0.33|1|0|0.33|3|0|218; (*GB) gi|356553216|ref|XP_003544954.1| (e_value=3e-48) PREDICTED: uncharacterized protein LOC100784269 [Glycine max];; (*TAIR) AT5G16360.1 (e_value=3e-40) | Symbols: | NC domain-containing protein-related | chr5:5355236-5356195 REVERSE LENGTH=283;; (*ITAG) Solyc02g081580.2.1 (e_value=1e-60) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00047940g0012.1 protein AED:0.41 eAED:0.41 QI:21|0.83|0.71|0.85|1|1|7|0|394; (*GB) gi|225437370|ref|XP_002269158.1| (e_value=2e-172) PREDICTED: peter Pan-like protein [Vitis vinifera];; (*SWP) sp|Q9ASU7|PPAN_ARATH (e_value=1e-164) Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1;; (*TAIR) AT5G61770.1 (e_value=9e-166) | Symbols: PPAN | PETER PAN-like protein | chr5:24815888-24817495 FORWARD LENGTH=345;; (*ITAG) Solyc01g096800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79556843-79561394 transcript_region:SL2.40ch01:79556843..79561394+ go_terms:GO:0005515,GO:0019843 functional_description:"SWI4 1 Peter Pan-like protein suppressor (AHRD V1 **-- D0MSA0_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; GO:0005515,GO:0019843 NbS00030167g0010.1 protein AED:0.25 eAED:0.25 QI:974|0.81|0.66|1|0.81|0.75|12|425|847; (*GB) gi|359484070|ref|XP_002271972.2| (e_value=1e-138) PREDICTED: uncharacterized protein LOC100261347 [Vitis vinifera];; (*SWP) sp|Q7LBC6|KDM3B_HUMAN (e_value=2e-31) Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2;; (*TAIR) AT1G11950.1 (e_value=2e-119) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr1:4034747-4038310 REVERSE LENGTH=875;; (*ITAG) Solyc09g091490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66106316-66112605 transcript_region:SL2.40ch09:66106316..66112605- go_terms:GO:0032454,GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbS00049776g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|112; (*ITAG) Solyc07g032800.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00022081g0006.1 protein AED:0.12 eAED:0.12 QI:0|0.82|0.77|0.94|0.76|0.72|18|396|563; (*GB) gi|357449789|ref|XP_003595171.1| (e_value=0.0) Nucleosome/chromatin assembly factor group [Medicago truncatula];; (*SWP) sp|O22607|MSI4_ARATH (e_value=0.0) WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3;; (*TAIR) AT2G19520.1 (e_value=0.0) | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507;; (*ITAG) Solyc03g121580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00022081g0007.1 protein AED:0.19 eAED:0.19 QI:0|1|0.75|1|0|0.25|4|509|112; (*GB) gi|297738663|emb|CBI27908.3| (e_value=1e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29735.1 (e_value=3e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:14562962-14564277 REVERSE LENGTH=76;; (*ITAG) Solyc12g008860.1.1 (e_value=3e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2195406-2198052 transcript_region:SL2.40ch12:2195406..2198052- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007915 Uncharacterised protein family UPF0197 "; NbS00020043g0018.1 protein AED:0.09 eAED:0.09 QI:0|1|0.75|1|1|1|4|0|352; (*GB) gi|110559491|gb|ABG76000.1| (e_value=0.0) GRP-like protein 2 [Gossypium hirsutum];; (*SWP) sp|O04300|UPTG_PEA (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1;; (*TAIR) AT3G08900.1 (e_value=0.0) | Symbols: RGP3, RGP | reversibly glycosylated polypeptide 3 | chr3:2708347-2709714 REVERSE LENGTH=362;; (*ITAG) Solyc03g019750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6682814-6684343 transcript_region:SL2.40ch03:6682814..6684343- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9REB8_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00020043g0019.1 protein AED:0.13 eAED:0.13 QI:493|0.88|0.9|1|1|1|10|49|685; (*GB) gi|255569405|ref|XP_002525670.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=0.0) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=0.0) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc03g019760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:6688319-6692363 transcript_region:SL2.40ch03:6688319..6692363- go_terms:GO:0008559 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00020043g0012.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|296; (*GB) gi|113205445|gb|AAW28576.2| (e_value=5e-38) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00020043g0017.1 protein AED:0.35 eAED:0.35 QI:15|0.87|0.88|1|0.87|0.88|9|406|356; (*GB) gi|350537577|ref|NP_001234811.1| (e_value=9e-135) ubiquitin activating enzyme [Solanum lycopersicum];; (*SWP) sp|P0DI13|SA1B2_ARATH (e_value=4e-113) SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana GN=SAE1B-2 PE=2 SV=1;; (*TAIR) AT5G50580.2 (e_value=3e-114) | Symbols: SAE1B, AT-SAE1-2 | SUMO-activating enzyme 1B | chr5:20585500-20587401 FORWARD LENGTH=320;; (*ITAG) Solyc03g019730.2.1 (e_value=5e-156) genomic_reference:SL2.40ch03 gene_region:6670321-6676255 transcript_region:SL2.40ch03:6670321..6676255- go_terms:GO:0019948 functional_description:"Sumo activating enzyme 1b (AHRD V1 **** D7MQ99_ARALY); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019948 NbS00020043g0020.1 protein AED:0.15 eAED:0.59 QI:0|0|0|1|0|0|3|0|87 NbS00009202g0003.1 protein AED:0.07 eAED:0.08 QI:0|0.33|0.28|1|0.5|0.42|7|0|1581; (*GB) gi|359478708|ref|XP_002282476.2| (e_value=1e-119) PREDICTED: uncharacterized protein LOC100258707 [Vitis vinifera];; (*SWP) sp|Q9M658|MOM1_ARATH (e_value=6e-83) Helicase protein MOM1 OS=Arabidopsis thaliana GN=MOM1 PE=1 SV=1;; (*TAIR) AT1G08060.2 (e_value=4e-84) | Symbols: MOM, MOM1 | ATP-dependent helicase family protein | chr1:2501981-2510488 REVERSE LENGTH=2001;; (*ITAG) Solyc06g010200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:5385221-5398335 transcript_region:SL2.40ch06:5385221..5398335- functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 *-*- D5LXF2_SCHMD)"; NbS00034427g0003.1 protein AED:0.29 eAED:0.29 QI:313|0.66|0.71|1|0.66|0.71|7|455|408; (*GB) gi|255568141|ref|XP_002525046.1| (e_value=2e-74) adenylate kinase 1 chloroplast, putative [Ricinus communis];; (*SWP) sp|Q9ZUU1|KADC1_ARATH (e_value=1e-56) Probable adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=At2g37250 PE=2 SV=1;; (*TAIR) AT2G39270.1 (e_value=1e-65) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16399983-16401408 FORWARD LENGTH=295;; (*ITAG) Solyc04g049690.2.1 (e_value=6e-83) genomic_reference:SL2.40ch04 gene_region:42201867-42210091 transcript_region:SL2.40ch04:42201867..42210091- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00036656g0013.1 protein AED:0.37 eAED:0.40 QI:0|0.5|0|1|0.5|0.8|5|0|133; (*GB) gi|297744860|emb|CBI38274.3| (e_value=3e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LX99|GRIMP_ARATH (e_value=9e-13) Geminivirus Rep-interacting motor protein OS=Arabidopsis thaliana GN=GRIMP PE=1 SV=1;; (*TAIR) AT5G10470.1 (e_value=7e-14) | Symbols: KCA1, KAC1 | kinesin like protein for actin based chloroplast movement 1 | chr5:3290121-3297248 REVERSE LENGTH=1273;; (*ITAG) Solyc11g010560.1.1 (e_value=8e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3608218-3629851 transcript_region:SL2.40ch11:3608218..3629851- go_terms:GO:0007018 functional_description:"Kinesin-like protein (AHRD V1 *-*- Q9SS42_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00036656g0009.1 protein AED:0.34 eAED:0.40 QI:0|0.57|0.25|1|0.71|0.62|8|98|267 NbS00036656g0012.1 protein AED:0.27 eAED:0.90 QI:0|0|0.2|0.8|0.5|0.2|5|21|479 NbC26252415g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|297739775|emb|CBI29957.3| (e_value=7e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46302|RS28_MAIZE (e_value=2e-23) 40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1;; (*TAIR) AT5G64140.1 (e_value=1e-23) | Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64;; (*ITAG) Solyc10g078630.1.1 (e_value=2e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:59705341-59705538 transcript_region:SL2.40ch10:59705341..59705538- go_terms:GO:0005840 functional_description:"40S ribosomal protein S28 (AHRD V1 ***- B6T1V2_MAIZE); contains Interpro domain(s) IPR000289 Ribosomal protein S28e "; GO:0005840 NbS00042467g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|57013951|ref|YP_173423.1| (e_value=3e-71) hypothetical protein NitaMp081 [Nicotiana tabacum]; NbS00042467g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|222; (*GB) gi|224099387|ref|XP_002311465.1| (e_value=3e-46) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g009210.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3352146-3353024 transcript_region:SL2.40ch05:3352146..3353024- functional_description:"At1g67050 (Fragment) (AHRD V1 *-*- B0FU30_ARATH)"; NbS00006333g0001.1 protein AED:0.13 eAED:0.13 QI:481|0.5|0.6|1|1|1|5|434|585; (*GB) gi|6226239|sp|O24381.2|TLC1_SOLTU (e_value=0.0) RecName: Full=Plastidic ATP/ADP-transporter;; (*SWP) sp|O24381|TLC1_SOLTU (e_value=0.0) Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT1G80300.1 (e_value=0.0) | Symbols: NTT1, ATNTT1 | nucleotide transporter 1 | chr1:30191954-30194280 FORWARD LENGTH=624;; (*ITAG) Solyc12g042950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43908614-43911733 transcript_region:SL2.40ch12:43908614..43911733+ go_terms:GO:0005515 functional_description:"ADP/ATP carrier protein (AHRD V1 ***- Q5L657_CHLAB); contains Interpro domain(s) IPR004667 ADP/ATP carrier protein "; GO:0005515 NbS00055449g0002.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.25|1|1|4|0|91 NbS00001051g0011.1 protein AED:0.19 eAED:0.19 QI:0|1|0.8|1|1|0.8|5|332|386; (*GB) gi|350534672|ref|NP_001234409.1| (e_value=0.0) protein kinase 1b [Solanum lycopersicum];; (*SWP) sp|Q06548|APK1A_ARATH (e_value=0.0) Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1;; (*TAIR) AT1G07570.1 (e_value=0.0) | Symbols: APK1A, APK1 | Protein kinase superfamily protein | chr1:2331369-2333210 REVERSE LENGTH=410;; (*ITAG) Solyc06g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:525975-529157 transcript_region:SL2.40ch06:525975..529157+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001051g0007.1 protein AED:0.41 eAED:0.66 QI:0|0|0|0.66|1|1|3|0|118; (*GB) gi|255581252|ref|XP_002531438.1| (e_value=3e-32) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5Q0B3|FLP1_ARATH (e_value=1e-13) Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana GN=FLP1 PE=2 SV=2;; (*TAIR) AT4G31380.1 (e_value=3e-14) | Symbols: FLP1 | FPF1-like protein 1 | chr4:15229837-15230382 FORWARD LENGTH=181;; (*ITAG) Solyc06g005530.1.1 (e_value=4e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:574514-575401 transcript_region:SL2.40ch06:574514..575401- functional_description:"FPF1 protein (AHRD V1 **-- O24340_SINAL)"; NbS00001051g0012.1 protein AED:0.09 eAED:0.09 QI:0|0|0.2|1|0.25|0.4|5|0|470; (*GB) gi|255581254|ref|XP_002531439.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9LTC0|Y5707_ARATH (e_value=4e-102) Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1;; (*TAIR) AT2G28940.2 (e_value=3e-161) | Symbols: | Protein kinase superfamily protein | chr2:12426853-12428678 REVERSE LENGTH=462;; (*ITAG) Solyc06g005520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:546476-550360 transcript_region:SL2.40ch06:546476..550360- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00020588g0024.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|529; (*GB) gi|255555323|ref|XP_002518698.1| (e_value=8e-148) copper ion binding protein, putative [Ricinus communis];; (*TAIR) AT3G19430.1 (e_value=5e-133) | Symbols: | late embryogenesis abundant protein-related / LEA protein-related | chr3:6736382-6738330 REVERSE LENGTH=559;; (*ITAG) Solyc06g034130.2.1 (e_value=2e-177) genomic_reference:SL2.40ch06 gene_region:20393296-20394748 transcript_region:SL2.40ch06:20393296..20394748- go_terms:GO:0016042 functional_description:"Root cap protein 3 (Fragment) (AHRD V1 **-- Q1HVA8_MESVI); contains Interpro domain(s) IPR009646 Root cap "; GO:0016042 NbS00020588g0017.1 protein AED:0.28 eAED:0.29 QI:0|0.4|0.16|1|0.6|0.83|6|0|453; (*GB) gi|224103627|ref|XP_002313128.1| (e_value=2e-133) predicted protein [Populus trichocarpa];; (*SWP) sp|O60337|MARH6_HUMAN (e_value=2e-22) E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1 SV=2;; (*TAIR) AT4G34100.1 (e_value=2e-123) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1108;; (*ITAG) Solyc01g107880.2.1 (e_value=2e-142) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00020588g0016.1 protein AED:0.42 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|174; (*GB) gi|356499761|ref|XP_003518705.1| (e_value=1e-76) PREDICTED: E3 ubiquitin-protein ligase MARCH6-like [Glycine max];; (*SWP) sp|Q5R9W1|MARH6_PONAB (e_value=6e-12) E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2 SV=1;; (*TAIR) AT4G34100.2 (e_value=1e-74) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1107;; (*ITAG) Solyc01g107880.2.1 (e_value=2e-77) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00020588g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|279; (*GB) gi|225428845|ref|XP_002282369.1| (e_value=8e-100) PREDICTED: transcription factor bHLH95 [Vitis vinifera];; (*SWP) sp|Q9FXA3|BH095_ARATH (e_value=4e-48) Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2;; (*TAIR) AT1G49770.1 (e_value=3e-49) | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:18424578-18426531 FORWARD LENGTH=308;; (*ITAG) Solyc01g107950.1.1 (e_value=3e-70) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:87091511-87094312 transcript_region:SL2.40ch01:87091511..87094312+ go_terms:GO:0030528 functional_description:"Transcription factor bHLH95 (AHRD V1 *-** BH095_ARATH); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00020588g0025.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0.5|2|0|101; (*GB) gi|57013960|ref|YP_173432.1| (e_value=1e-18) hypothetical protein NitaMp093 [Nicotiana tabacum]; NbS00020588g0026.1 protein AED:0.60 eAED:0.73 QI:0|0|0|1|1|1|2|0|103; (*GB) gi|57013961|ref|YP_173433.1| (e_value=1e-16) hypothetical protein NitaMp094 [Nicotiana tabacum]; NbS00055863g0008.1 protein AED:0.16 eAED:0.21 QI:0|0.6|0.33|1|0.2|0.33|6|125|495; (*GB) gi|224118680|ref|XP_002331421.1| (e_value=1e-166) predicted protein [Populus trichocarpa];; (*SWP) sp|Q940M4|OCT7_ARATH (e_value=5e-139) Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1;; (*TAIR) AT3G13050.1 (e_value=4e-140) | Symbols: | Major facilitator superfamily protein | chr3:4176866-4178868 FORWARD LENGTH=500;; (*ITAG) Solyc07g042900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53752300-53758204 transcript_region:SL2.40ch07:53752300..53758204+ go_terms:GO:0015101 functional_description:"Major facilitator family transporter (AHRD V1 **-* C9KLG5_9FIRM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015101 NbS00055863g0007.1 protein AED:0.21 eAED:0.21 QI:146|0.95|0.88|1|0.75|0.84|25|374|934; (*GB) gi|359483090|ref|XP_002274115.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255062 [Vitis vinifera];; (*TAIR) AT5G58100.1 (e_value=0.0) | Symbols: | unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:23507828-23514863 FORWARD LENGTH=945;; (*ITAG) Solyc07g042910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53758585-53795215 transcript_region:SL2.40ch07:53758585..53795215- functional_description:"Genomic DNA chromosome 5 TAC clone K21L19 (AHRD V1 **-- Q9FGT4_ARATH)"; NbS00000037g0005.1 protein AED:0.15 eAED:0.15 QI:0|0|0.33|1|0.5|0.66|3|104|836; (*GB) gi|147858101|emb|CAN78867.1| (e_value=0.0) hypothetical protein VITISV_041982 [Vitis vinifera];; (*SWP) sp|Q9LSL9|PP445_ARATH (e_value=3e-156) Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1;; (*TAIR) AT5G65560.1 (e_value=2e-157) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:26201012-26203759 REVERSE LENGTH=915;; (*ITAG) Solyc07g047820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56348851-56351592 transcript_region:SL2.40ch07:56348851..56351592+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011080g0004.1 protein AED:0.44 eAED:0.78 QI:0|0|0|1|0|0|2|0|55 NbS00006577g0028.1 protein AED:0.04 eAED:0.04 QI:354|1|1|1|0.75|0.6|5|616|922; (*GB) gi|147770432|emb|CAN75893.1| (e_value=0.0) hypothetical protein VITISV_009390 [Vitis vinifera];; (*SWP) sp|Q9LE38|NLP4_ARATH (e_value=0.0) Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1;; (*TAIR) AT1G20640.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr1:7155201-7157986 FORWARD LENGTH=844;; (*ITAG) Solyc04g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63713023-63717884 transcript_region:SL2.40ch04:63713023..63717884+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DME9_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00006577g0027.1 protein AED:0.07 eAED:0.07 QI:142|1|0.87|1|1|1|8|0|492; (*GB) gi|211906480|gb|ACJ11733.1| (e_value=0.0) catalase [Gossypium hirsutum];; (*SWP) sp|P49317|CATA3_NICPL (e_value=0.0) Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN=CAT3 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc04g082460.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63696861-63701335 transcript_region:SL2.40ch04:63696861..63701335+ go_terms:GO:0004096 functional_description:"Catalase (AHRD V1 **** Q8L7J7_CAPAN); contains Interpro domain(s) IPR018028 Catalase related subgroup "; GO:0004096 NbS00006577g0036.1 protein AED:0.08 eAED:0.08 QI:69|0.87|0.88|1|0.75|0.77|9|480|694; (*GB) gi|147814821|emb|CAN74748.1| (e_value=6e-149) hypothetical protein VITISV_012026 [Vitis vinifera];; (*SWP) sp|Q9ULD4|BRPF3_HUMAN (e_value=1e-20) Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2;; (*TAIR) AT1G20670.1 (e_value=5e-121) | Symbols: | DNA-binding bromodomain-containing protein | chr1:7164537-7167933 REVERSE LENGTH=652;; (*ITAG) Solyc06g051210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30886606-30892332 transcript_region:SL2.40ch06:30886606..30892332- functional_description:"Bromodomain-containing protein (AHRD V1 ***- B9R8P3_RICCO); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00006577g0039.1 protein AED:0.08 eAED:0.08 QI:55|0.92|0.92|1|0.59|0.60|28|241|1263; (*GB) gi|359491914|ref|XP_002272718.2| (e_value=0.0) PREDICTED: Fanconi anemia group J protein-like [Vitis vinifera];; (*SWP) sp|Q5SXJ3|FANCJ_MOUSE (e_value=3e-144) Fanconi anemia group J protein homolog OS=Mus musculus GN=Brip1 PE=2 SV=1;; (*TAIR) AT1G20720.1 (e_value=0.0) | Symbols: | RAD3-like DNA-binding helicase protein | chr1:7185658-7192794 REVERSE LENGTH=1175;; (*ITAG) Solyc10g079510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60364043-60378026 transcript_region:SL2.40ch10:60364043..60378026- go_terms:GO:0008026,GO:0016818,GO:0005524,GO:0006139 functional_description:"Helicase-like protein (AHRD V1 *-*- Q383Z6_9TRYP); contains Interpro domain(s) IPR013020 DNA helicase (DNA repair), Rad3 type "; GO:0008026,GO:0016818,GO:0005524,GO:0006139 NbS00006577g0030.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|554; (*GB) gi|225457528|ref|XP_002270022.1| (e_value=0.0) PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=0.0) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=0.0) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc06g008920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2849007-2853412 transcript_region:SL2.40ch06:2849007..2853412- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00006577g0038.1 protein AED:0.14 eAED:0.16 QI:0|0.16|0.14|0.85|0.16|0.42|7|0|388; (*GB) gi|255539232|ref|XP_002510681.1| (e_value=6e-121) serine/threonine-protein kinase cx32, putative [Ricinus communis];; (*SWP) sp|O49839|APK2A_ARATH (e_value=3e-82) Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=2 SV=1;; (*TAIR) AT1G76360.1 (e_value=5e-104) | Symbols: | Protein kinase superfamily protein | chr1:28643242-28646483 REVERSE LENGTH=484;; (*ITAG) Solyc04g082500.2.1 (e_value=3e-135) genomic_reference:SL2.40ch04 gene_region:63746025-63750192 transcript_region:SL2.40ch04:63746025..63750192- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00006577g0033.1 protein AED:0.26 eAED:0.26 QI:478|1|1|1|1|1|4|158|388; (*GB) gi|255539274|ref|XP_002510702.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|P93006|P2C27_ARATH (e_value=0.0) Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1;; (*TAIR) AT2G33700.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr2:14254200-14255784 FORWARD LENGTH=380;; (*ITAG) Solyc04g082600.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63822035-63827003 transcript_region:SL2.40ch04:63822035..63827003- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00035982g0001.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|215; (*ITAG) Solyc11g039800.1.1 (e_value=9e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031049g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|131; (*GB) gi|76786474|gb|ABA54988.1| (e_value=1e-64) xyloglucan endotransglycosylase hydrolase [Apium graveolens];; (*SWP) sp|Q8LC45|XTH33_ARATH (e_value=4e-57) Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2;; (*TAIR) AT1G10550.1 (e_value=3e-58) | Symbols: XTH33, XET | xyloglucan:xyloglucosyl transferase 33 | chr1:3479257-3480957 REVERSE LENGTH=310;; (*ITAG) Solyc05g005680.2.1 (e_value=1e-71) genomic_reference:SL2.40ch05 gene_region:506438-508385 transcript_region:SL2.40ch05:506438..508385+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 2 (AHRD V1 **** D5HP44_9ROSA); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00031049g0004.1 protein AED:0.37 eAED:0.99 QI:0|0|0|1|0|0|2|0|62 NbS00031049g0208.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|0.5|0.33|3|0|371 NbS00031049g0209.1 protein AED:0.31 eAED:0.32 QI:0|1|0.71|1|0.66|0.57|7|0|314 NbS00044479g0004.1 protein AED:0.28 eAED:0.33 QI:0|0.66|0.25|1|1|1|4|0|261; (*GB) gi|2467255|emb|CAA75214.1| (e_value=1e-173) annexin [Nicotiana tabacum];; (*SWP) sp|Q9SYT0|ANXD1_ARATH (e_value=1e-113) Annexin D1 OS=Arabidopsis thaliana GN=ANN1 PE=1 SV=1;; (*TAIR) AT1G35720.1 (e_value=9e-115) | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:13225304-13226939 FORWARD LENGTH=317;; (*ITAG) Solyc04g073990.2.1 (e_value=3e-168) genomic_reference:SL2.40ch04 gene_region:57610227-57612650 transcript_region:SL2.40ch04:57610227..57612650- go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- Q42657_CAPAN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00044479g0009.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|0.75|1|5|0|651; (*GB) gi|255545698|ref|XP_002513909.1| (e_value=1e-140) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C9R6|PUM7_ARATH (e_value=5e-139) Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2;; (*TAIR) AT1G78160.1 (e_value=4e-140) | Symbols: APUM7, PUM7 | pumilio 7 | chr1:29407900-29410184 FORWARD LENGTH=650;; (*ITAG) Solyc04g073980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57605468-57610119 transcript_region:SL2.40ch04:57605468..57610119+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio family protein (AHRD V1 *-*- D8U4V9_VOLCA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbC25737997g0001.1 protein AED:0.06 eAED:0.05 QI:0|1|0.25|1|1|1|4|0|489; (*GB) gi|225461822|ref|XP_002283705.1| (e_value=2e-40) PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Vitis vinifera];; (*SWP) sp|Q9FPS4|UBP23_ARATH (e_value=1e-11) Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2;; (*TAIR) AT5G57990.1 (e_value=8e-13) | Symbols: UBP23 | ubiquitin-specific protease 23 | chr5:23470218-23473997 REVERSE LENGTH=859;; (*ITAG) Solyc07g005530.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:421123-429027 transcript_region:SL2.40ch07:421123..429027+ go_terms:GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 ***- D7MNY5_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006511 NbS00000439g0011.1 protein AED:0.14 eAED:0.14 QI:83|1|0.83|1|0.6|0.66|6|0|259; (*GB) gi|82623405|gb|ABB87117.1| (e_value=1e-145) unknown [Solanum tuberosum];; (*SWP) sp|Q9M3V8|RS6_ASPOF (e_value=3e-137) 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1;; (*TAIR) AT5G10360.1 (e_value=3e-135) | Symbols: EMB3010, RPS6B | Ribosomal protein S6e | chr5:3258734-3260142 REVERSE LENGTH=249;; (*ITAG) Solyc08g074240.2.1 (e_value=2e-147) genomic_reference:SL2.40ch08 gene_region:55522360-55525315 transcript_region:SL2.40ch08:55522360..55525315+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S6 (AHRD V1 ***- B6T1H0_MAIZE); contains Interpro domain(s) IPR014401 Ribosomal protein S6, eukaryotic "; GO:0003735,GO:0005515 NbS00000439g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|440; (*GB) gi|224089921|ref|XP_002308866.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=0.0) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT3G56640.1 (e_value=0.0) | Symbols: SEC15A | exocyst complex component sec15A | chr3:20981964-20984336 FORWARD LENGTH=790;; (*ITAG) Solyc12g096290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63618192-63620489 transcript_region:SL2.40ch12:63618192..63620489+ go_terms:GO:0005975,GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0005975,GO:0000145 NbS00000439g0004.1 protein AED:0.26 eAED:0.35 QI:190|1|0.5|1|0|1|2|0|356; (*GB) gi|147864200|emb|CAN83025.1| (e_value=3e-142) hypothetical protein VITISV_039681 [Vitis vinifera];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=9e-130) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT3G56640.1 (e_value=7e-131) | Symbols: SEC15A | exocyst complex component sec15A | chr3:20981964-20984336 FORWARD LENGTH=790;; (*ITAG) Solyc12g096290.1.1 (e_value=4e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63618192-63620489 transcript_region:SL2.40ch12:63618192..63620489+ go_terms:GO:0005975,GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0005975,GO:0000145 NbS00000439g0014.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|0|0|6|0|503; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-61) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00000439g0107.1 protein AED:0.21 eAED:0.21 QI:327|0.62|0.77|0.88|0.75|0.66|9|285|302 NbS00005041g0007.1 protein AED:0.22 eAED:0.26 QI:0|0.57|0.62|1|0.71|0.62|8|910|330; (*GB) gi|297739719|emb|CBI29901.3| (e_value=3e-71) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66GR3|BH130_ARATH (e_value=5e-56) Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1;; (*TAIR) AT2G42280.1 (e_value=4e-57) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:17611428-17613163 REVERSE LENGTH=359;; (*ITAG) Solyc01g086870.2.1 (e_value=1e-118) genomic_reference:SL2.40ch01 gene_region:73557988-73560314 transcript_region:SL2.40ch01:73557988..73560314- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005041g0008.1 protein AED:0.39 eAED:0.40 QI:157|0.5|0.66|1|0|0|3|331|88; (*GB) gi|225448075|ref|XP_002276143.1| (e_value=3e-39) PREDICTED: uncharacterized protein LOC100242881 [Vitis vinifera];; (*TAIR) AT4G25315.2 (e_value=2e-31) | Symbols: | Expressed protein | chr4:12951659-12952834 REVERSE LENGTH=108;; (*ITAG) Solyc01g086860.2.1 (e_value=2e-46) genomic_reference:SL2.40ch01 gene_region:73539705-73548284 transcript_region:SL2.40ch01:73539705..73548284+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020799g0009.1 protein AED:0.06 eAED:0.13 QI:1|0.8|0.83|1|0.6|0.5|6|368|1093; (*GB) gi|359491239|ref|XP_003634247.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100853506 [Vitis vinifera];; (*SWP) sp|Q8BM47|PKHM3_MOUSE (e_value=1e-31) Pleckstrin homology domain-containing family M member 3 OS=Mus musculus GN=Plekhm3 PE=1 SV=1;; (*TAIR) AT3G48195.1 (e_value=0.0) | Symbols: | Phox (PX) domain-containing protein | chr3:17828706-17832388 REVERSE LENGTH=938;; (*ITAG) Solyc03g112830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57189524-57195559 transcript_region:SL2.40ch03:57189524..57195559+ go_terms:GO:0007154 functional_description:"Differentially expressed in FDCP 8 homolog (AHRD V1 *--- C0H965_SALSA); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00020799g0010.1 protein AED:0.07 eAED:0.12 QI:0|1|0.66|1|0.5|0.66|3|170|307; (*GB) gi|224133586|ref|XP_002321611.1| (e_value=1e-138) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50290.1 (e_value=1e-119) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits to 300 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:20461814-20463896 FORWARD LENGTH=303;; (*ITAG) Solyc03g112790.2.1 (e_value=1e-173) genomic_reference:SL2.40ch03 gene_region:57176091-57177710 transcript_region:SL2.40ch03:57176091..57177710- functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 ***- Q9FGR6_ARATH)"; NbC25843329g0001.1 protein AED:0.15 eAED:0.37 QI:13|-1|0|1|-1|0|1|0|56; (*ITAG) Solyc01g109690.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88340098-88340346 transcript_region:SL2.40ch01:88340098..88340346- go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **** D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003700 NbS00030885g0006.1 protein AED:0.15 eAED:0.27 QI:0|0.75|0.4|1|0.5|0.6|5|0|769; (*GB) gi|359478712|ref|XP_002282519.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255350 [Vitis vinifera];; (*SWP) sp|Q9SJJ3|BLH8_ARATH (e_value=1e-79) BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana GN=BLH8 PE=1 SV=1;; (*TAIR) AT2G27990.1 (e_value=1e-80) | Symbols: BLH8, PNF | BEL1-like homeodomain 8 | chr2:11921540-11923902 REVERSE LENGTH=584;; (*ITAG) Solyc11g069890.1.1 (e_value=3e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51585084-51589846 transcript_region:SL2.40ch11:51585084..51589846- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 8 (AHRD V1 *--- BLH8_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00006511g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|1|2|0|198; (*GB) gi|147799284|emb|CAN76998.1| (e_value=1e-56) hypothetical protein VITISV_007763 [Vitis vinifera];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=5e-27) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT1G79800.1 (e_value=3e-39) | Symbols: ENODL7, AtENODL7 | early nodulin-like protein 7 | chr1:30018549-30019217 FORWARD LENGTH=192;; (*ITAG) Solyc10g005940.1.1 (e_value=3e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:727632-728463 transcript_region:SL2.40ch10:727632..728463- go_terms:GO:0009055 functional_description:"CT099 (Fragment) (AHRD V1 *--- Q4KR02_SOLCI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00006511g0126.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.33|1|0.5|0.66|3|0|591 NbS00006511g0127.1 protein AED:0.34 eAED:0.34 QI:96|0.77|0.8|1|0.66|0.7|10|291|332 NbS00006511g0130.1 protein AED:0.20 eAED:0.20 QI:107|1|1|1|0.8|0.72|11|316|910 NbS00006511g0106.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|1|1|3|0|571 NbS00006511g0102.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.71|1|0.83|0.71|7|216|187 NbS00006511g0125.1 protein AED:0.30 eAED:0.37 QI:0|1|0.5|1|1|0.5|2|0|91 NbS00006511g0132.1 protein AED:0.33 eAED:0.45 QI:0|0|0|1|0|0|2|0|77 NbS00023335g0009.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|1|1|2|0|364; (*GB) gi|339790489|dbj|BAK52401.1| (e_value=0.0) receptor like protein kinase SOL2 [Solanum pennellii];; (*SWP) sp|Q9LYU7|CRN_ARATH (e_value=1e-153) Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis thaliana GN=CRN PE=1 SV=1;; (*TAIR) AT5G13290.2 (e_value=8e-155) | Symbols: SOL2, CRN | Protein kinase superfamily protein | chr5:4252924-4254215 REVERSE LENGTH=401;; (*ITAG) Solyc05g023760.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:29281405-29283531 transcript_region:SL2.40ch05:29281405..29283531+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase 5 (AHRD V1 ***- B6U5J8_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00013901g0014.1 protein AED:0.14 eAED:0.14 QI:157|0.75|0.66|1|0.87|1|9|0|329; (*GB) gi|363806722|ref|NP_001242526.1| (e_value=1e-166) uncharacterized protein LOC100807840 [Glycine max];; (*SWP) sp|Q9Y5K3|PCY1B_HUMAN (e_value=1e-83) Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1;; (*TAIR) AT2G32260.1 (e_value=4e-157) | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidylyltransferase | chr2:13697645-13700241 FORWARD LENGTH=332;; (*ITAG) Solyc02g068430.2.1 (e_value=1e-140) genomic_reference:SL2.40ch02 gene_region:32957930-32965109 transcript_region:SL2.40ch02:32957930..32965109- go_terms:GO:0004306,GO:0004105 functional_description:"Choline-phosphate cytidylyltransferase B (AHRD V1 **** B4F7T8_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306,GO:0004105 NbS00013901g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|13|161; (*GB) gi|357462381|ref|XP_003601472.1| (e_value=7e-18) hypothetical protein MTR_3g082070 [Medicago truncatula];; (*TAIR) AT4G15140.1 (e_value=7e-13) | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8639683-8640261 REVERSE LENGTH=165;; (*ITAG) Solyc07g043070.2.1 (e_value=1e-38) genomic_reference:SL2.40ch07 gene_region:53927784-53928564 transcript_region:SL2.40ch07:53927784..53928564+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013901g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|469; (*GB) gi|224139558|ref|XP_002323168.1| (e_value=3e-168) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=1e-156) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT1G07250.1 (e_value=3e-136) | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4 | chr1:2225963-2227402 FORWARD LENGTH=479;; (*ITAG) Solyc07g043050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53916578-53918008 transcript_region:SL2.40ch07:53916578..53918008- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00034705g0004.1 protein AED:0.21 eAED:0.21 QI:0|1|1|1|0.8|0.66|6|258|274; (*GB) gi|77745477|gb|ABB02637.1| (e_value=4e-153) ER lumen retaining receptor family-like protein [Solanum tuberosum];; (*SWP) sp|Q09473|ERD22_CAEEL (e_value=1e-28) Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1;; (*TAIR) AT3G25160.1 (e_value=3e-123) | Symbols: | ER lumen protein retaining receptor family protein | chr3:9160337-9162023 REVERSE LENGTH=272;; (*ITAG) Solyc06g083270.2.1 (e_value=3e-178) genomic_reference:SL2.40ch06 gene_region:45045594-45049094 transcript_region:SL2.40ch06:45045594..45049094+ go_terms:GO:0005046 functional_description:"ER lumen retaining receptor family-like protein (AHRD V1 ***- Q38JH5_SOLTU); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00058506g0004.1 protein AED:0.28 eAED:0.28 QI:207|0.5|0.8|1|0.5|0.6|5|116|71; (*TAIR) AT4G16770.1 (e_value=9e-16) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9434571-9437168 REVERSE LENGTH=325;; (*ITAG) Solyc06g060800.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:35217666-35228843 transcript_region:SL2.40ch06:35217666..35228843- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase (AHRD V1 **-* D7FYW8_ECTSI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00010208g0015.1 protein AED:0.27 eAED:0.27 QI:156|0.66|0.57|1|0.5|0.42|7|0|514; (*GB) gi|225431465|ref|XP_002274308.1| (e_value=0.0) PREDICTED: 5' exonuclease Apollo-like [Vitis vinifera];; (*SWP) sp|Q5QJC3|DCR1B_CHICK (e_value=3e-28) 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1;; (*TAIR) AT1G19025.1 (e_value=4e-161) | Symbols: | DNA repair metallo-beta-lactamase family protein | chr1:6568920-6570800 FORWARD LENGTH=549;; (*ITAG) Solyc11g006010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:817248-822378 transcript_region:SL2.40ch11:817248..822378+ functional_description:"DNA cross-link repair 1B-like protein (AHRD V1 *-*- Q8LQQ4_ORYSJ); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00028313g0001.1 protein AED:0.10 eAED:0.24 QI:0|0|0|1|1|1|4|219|441; (*GB) gi|225461850|ref|XP_002283789.1| (e_value=4e-61) PREDICTED: protein FRIGIDA-like [Vitis vinifera];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=9e-46) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=6e-27) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc06g074450.1.1 (e_value=5e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42463612-42465330 transcript_region:SL2.40ch06:42463612..42465330+ functional_description:"FRIGIDA (AHRD V1 *-*- Q52S92_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00028881g0007.1 protein AED:0.08 eAED:0.11 QI:0|0.77|0.7|1|0.44|0.7|10|0|488; (*GB) gi|133711813|gb|ABO36631.1| (e_value=0.0) sdl1-like protein [Solanum lycopersicum];; (*TAIR) AT3G57200.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41451.1); Has 94 Blast hits to 94 proteins in 31 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:21169413-21172103 FORWARD LENGTH=514;; (*ITAG) Solyc10g079210.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60119732-60124652 transcript_region:SL2.40ch10:60119732..60124652+ functional_description:"Abscisic acid insensitive 8 homologue (AHRD V1 **-- A5A6Q2_WHEAT)"; NbS00028881g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|133711801|gb|ABO36619.1| (e_value=3e-177) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=2e-11) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT3G50180.1 (e_value=2e-18) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18604943-18607162 REVERSE LENGTH=588;; (*ITAG) Solyc10g079230.1.1 (e_value=5e-180) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00028881g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|241; (*GB) gi|133711801|gb|ABO36619.1| (e_value=2e-144) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=1e-13) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G50120.1 (e_value=1e-21) | Symbols: | Plant protein of unknown function (DUF247) | chr3:18585157-18587246 REVERSE LENGTH=531;; (*ITAG) Solyc10g079230.1.1 (e_value=4e-147) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00046693g0003.1 protein AED:0.15 eAED:0.15 QI:239|1|1|1|0.66|0.6|10|423|588; (*GB) gi|16326137|dbj|BAB70512.1| (e_value=0.0) Myb [Nicotiana tabacum];; (*SWP) sp|Q9S7G7|MB3R1_ARATH (e_value=5e-78) Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1;; (*TAIR) AT4G32730.2 (e_value=4e-78) | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | Homeodomain-like protein | chr4:15791039-15795643 FORWARD LENGTH=995;; (*ITAG) Solyc08g080580.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61001617-61006067 transcript_region:SL2.40ch08:61001617..61006067- go_terms:GO:0003677,GO:0045449 functional_description:"Myb (AHRD V1 ***- Q948S4_TOBAC); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00027689g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|150; (*GB) gi|170676236|gb|ACB30357.1| (e_value=1e-48) putative bZIP transcriptional activator [Capsicum annuum];; (*ITAG) Solyc06g060490.2.1 (e_value=2e-60) genomic_reference:SL2.40ch06 gene_region:34902984-34908825 transcript_region:SL2.40ch06:34902984..34908825- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003677 NbS00027689g0006.1 protein AED:0.31 eAED:0.36 QI:147|0.66|0.6|0.8|0.77|0.9|10|0|395; (*GB) gi|225464400|ref|XP_002268110.1| (e_value=0.0) PREDICTED: exocyst complex component 7 [Vitis vinifera];; (*SWP) sp|Q9UPT5|EXOC7_HUMAN (e_value=4e-29) Exocyst complex component 7 OS=Homo sapiens GN=EXOC7 PE=1 SV=3;; (*TAIR) AT5G03540.1 (e_value=0.0) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc11g006620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00012469g0003.1 protein AED:0.84 eAED:0.86 QI:0|0|0|0.5|1|1|4|0|139 NbS00059756g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|331; (*GB) gi|37983539|gb|AAR06289.1| (e_value=0.0) 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum];; (*SWP) sp|P52418|PUR1_SOYBN (e_value=0.0) Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1;; (*TAIR) AT4G34740.1 (e_value=0.0) | Symbols: ATASE2, CIA1, ATPURF2, ASE2 | GLN phosphoribosyl pyrophosphate amidotransferase 2 | chr4:16574894-16576579 REVERSE LENGTH=561;; (*ITAG) Solyc01g110520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88954731-88956779 transcript_region:SL2.40ch01:88954731..88956779- go_terms:GO:0004044 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 *-*- GLMS_METKA); contains Interpro domain(s) IPR005854 Amidophosphoribosyl transferase "; GO:0004044 NbS00006308g0012.1 protein AED:0.04 eAED:0.04 QI:0|1|0.83|1|1|1|6|0|197; (*GB) gi|147840051|emb|CAN66034.1| (e_value=1e-52) hypothetical protein VITISV_036228 [Vitis vinifera];; (*TAIR) AT5G05570.1 (e_value=9e-36) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1124;; (*ITAG) Solyc06g051390.2.1 (e_value=1e-97) genomic_reference:SL2.40ch06 gene_region:31221832-31228128 transcript_region:SL2.40ch06:31221832..31228128+ go_terms:GO:0000166 functional_description:"Tomosyn-like protein (AHRD V1 **-- A9RPV0_PHYPA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00006308g0014.1 protein AED:0.04 eAED:0.04 QI:188|0.85|0.87|1|0.57|0.75|8|0|318; (*GB) gi|224109304|ref|XP_002315153.1| (e_value=1e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9Y2K9|STB5L_HUMAN (e_value=5e-17) Syntaxin-binding protein 5-like OS=Homo sapiens GN=STXBP5L PE=2 SV=2;; (*TAIR) AT5G05570.2 (e_value=2e-100) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc06g051380.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:31210017-31217104 transcript_region:SL2.40ch06:31210017..31217104+ functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 **-- L2GL2_DANRE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00006308g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.7|0.54|0.90|0.7|0.81|11|0|517; (*GB) gi|225448459|ref|XP_002272182.1| (e_value=3e-107) PREDICTED: uncharacterized protein LOC100250143 [Vitis vinifera];; (*TAIR) AT5G05570.2 (e_value=8e-87) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc06g051390.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31221832-31228128 transcript_region:SL2.40ch06:31221832..31228128+ go_terms:GO:0000166 functional_description:"Tomosyn-like protein (AHRD V1 **-- A9RPV0_PHYPA); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00061704g0004.1 protein AED:0.18 eAED:0.37 QI:87|0|0|0.8|0.5|0.4|5|0|210; (*GB) gi|30681096|ref|NP_179660.2| (e_value=1e-78) mannan endo-1,4-beta-mannosidase 2 [Arabidopsis thaliana];; (*SWP) sp|Q7Y223|MAN2_ARATH (e_value=4e-80) Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1;; (*TAIR) AT2G20680.1 (e_value=3e-81) | Symbols: MAN2, AtMAN2 | Glycosyl hydrolase superfamily protein | chr2:8921024-8923066 FORWARD LENGTH=433;; (*ITAG) Solyc10g008300.2.1 (e_value=2e-100) genomic_reference:SL2.40ch10 gene_region:2446485-2451132 transcript_region:SL2.40ch10:2446485..2451132- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00045346g0004.1 protein AED:0.26 eAED:0.41 QI:0|0|0|0.75|0.33|0.5|4|0|163; (*GB) gi|356545017|ref|XP_003540942.1| (e_value=8e-18) PREDICTED: uncharacterized protein LOC100799563 [Glycine max];; (*ITAG) Solyc10g038070.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:19355984-19358293 transcript_region:SL2.40ch10:19355984..19358293- functional_description:"Unknown Protein (AHRD V1)"; NbS00037078g0003.1 protein AED:0.08 eAED:0.08 QI:815|0.88|0.9|1|0.55|0.5|10|262|848; (*GB) gi|255544824|ref|XP_002513473.1| (e_value=0.0) copper-transporting atpase p-type, putative [Ricinus communis];; (*SWP) sp|Q9SH30|HMA5_ARATH (e_value=0.0) Putative copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2;; (*TAIR) AT1G63440.1 (e_value=0.0) | Symbols: HMA5 | heavy metal atpase 5 | chr1:23527655-23531109 FORWARD LENGTH=995;; (*ITAG) Solyc11g062100.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46055523-46059432 transcript_region:SL2.40ch11:46055523..46059432+ go_terms:GO:0030001,GO:0016020,GO:0008152 functional_description:"Copper-transporting ATPase (AHRD V1 ***- C1H876_PARBA); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0030001,GO:0016020,GO:0008152 NbS00058554g0003.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|1|3|0|505; (*GB) gi|85068662|gb|ABC69411.1| (e_value=0.0) CYP73A47v1 [Nicotiana tabacum];; (*SWP) sp|P48522|TCMO_CATRO (e_value=0.0) Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1;; (*TAIR) AT2G30490.1 (e_value=0.0) | Symbols: ATC4H, C4H, CYP73A5, REF3 | cinnamate-4-hydroxylase | chr2:12993861-12995683 REVERSE LENGTH=505;; (*ITAG) Solyc05g047530.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58159442-58161415 transcript_region:SL2.40ch05:58159442..58161415- go_terms:GO:0016710 functional_description:"Cytochrome P450"; GO:0016710 NbS00059012g0005.1 protein AED:0.29 eAED:0.29 QI:487|1|1|1|1|1|5|318|384; (*GB) gi|224144954|ref|XP_002325473.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=2e-179) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=2e-180) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc05g055790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64438039-64441321 transcript_region:SL2.40ch05:64438039..64441321+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- Q4L0F8_MEDSA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00059012g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.77|0.7|1|0.44|0.6|10|0|444; (*GB) gi|255547548|ref|XP_002514831.1| (e_value=3e-170) Aspartic proteinase Asp1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=3e-133) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT1G05840.1 (e_value=2e-147) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485;; (*ITAG) Solyc03g058400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:21497057-21499959 transcript_region:SL2.40ch03:21497057..21499959- go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7KF83_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00023914g0010.1 protein AED:0.37 eAED:0.37 QI:0|1|0.77|1|1|1|9|0|326; (*GB) gi|359483773|ref|XP_003633016.1| (e_value=0.0) PREDICTED: shaggy-related protein kinase eta-like [Vitis vinifera];; (*SWP) sp|Q39011|KSG7_ARATH (e_value=0.0) Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2;; (*TAIR) AT4G18710.1 (e_value=0.0) | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein kinase superfamily protein | chr4:10296474-10298913 FORWARD LENGTH=380;; (*ITAG) Solyc02g072300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36164733-36171575 transcript_region:SL2.40ch02:36164733..36171575+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00023914g0011.1 protein AED:0.47 eAED:0.69 QI:0|0|0|0.66|0.5|0.33|3|0|109; (*GB) gi|2191169|gb|AAB61055.1| (e_value=6e-17) Similar to shaggy related protein kinase. Belongs to the CDC2/CDKX subfamily [Arabidopsis thaliana];; (*TAIR) AT4G18710.1 (e_value=7e-22) | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein kinase superfamily protein | chr4:10296474-10298913 FORWARD LENGTH=380;; (*ITAG) Solyc02g072300.2.1 (e_value=3e-26) genomic_reference:SL2.40ch02 gene_region:36164733-36171575 transcript_region:SL2.40ch02:36164733..36171575+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00008444g0013.1 protein AED:0.24 eAED:0.29 QI:0|0.6|0.5|1|0.8|0.83|6|0|422; (*GB) gi|224069012|ref|XP_002326253.1| (e_value=7e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19490.1 (e_value=6e-21) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:6751953-6753959 REVERSE LENGTH=471;; (*ITAG) Solyc09g009760.1.1 (e_value=6e-112) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3241071-3246743 transcript_region:SL2.40ch09:3241071..3246743- go_terms:GO:0006355 functional_description:"Z-box binding factor 2 protein (AHRD V1 *-*- Q5K1L6_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0006355 NbS00008444g0012.1 protein AED:0.18 eAED:0.18 QI:0|0.62|0.55|0.88|0.75|0.66|9|0|609; (*GB) gi|296086152|emb|CBI31593.3| (e_value=2e-168) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=2e-94) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT5G58840.1 (e_value=3e-159) | Symbols: | Subtilase family protein | chr5:23759043-23761947 FORWARD LENGTH=713;; (*ITAG) Solyc09g009750.1.1 (e_value=6e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3234041-3240688 transcript_region:SL2.40ch09:3234041..3240688+ go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q8L7D2_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00031462g0004.1 protein AED:0.06 eAED:0.06 QI:2|0.83|0.57|1|1|0.71|7|0|483; (*GB) gi|109676322|gb|ABG37643.1| (e_value=0.0) unknown [Populus trichocarpa];; (*TAIR) AT5G25320.1 (e_value=0.0) | Symbols: | ACT-like superfamily protein | chr5:8787403-8789530 REVERSE LENGTH=500;; (*ITAG) Solyc06g011520.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:7974245-7977278 transcript_region:SL2.40ch06:7974245..7977278- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00051663g0009.1 protein AED:0.11 eAED:0.11 QI:106|1|1|1|0.66|0.5|4|276|376; (*GB) gi|255553512|ref|XP_002517797.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G08030.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF642 | chr3:2564191-2565819 FORWARD LENGTH=365;; (*ITAG) Solyc01g087540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74242394-74244767 transcript_region:SL2.40ch01:74242394..74244767+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00051663g0006.1 protein AED:0.35 eAED:0.39 QI:0|0.28|0.25|0.75|0.28|0.25|8|290|307; (*GB) gi|224055123|ref|XP_002298420.1| (e_value=2e-69) predicted protein [Populus trichocarpa];; (*SWP) sp|Q32LH7|NB5R4_BOVIN (e_value=1e-18) Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1;; (*TAIR) AT5G09680.2 (e_value=2e-55) | Symbols: RLF | reduced lateral root formation | chr5:2999362-3000185 REVERSE LENGTH=211;; (*ITAG) Solyc01g087550.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:74245157-74252090 transcript_region:SL2.40ch01:74245157..74252090- go_terms:GO:0020037 functional_description:"Nitrate reductase (AHRD V1 *--- Q7ZA50_9HYPO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0020037 NbS00009190g0007.1 protein AED:0.20 eAED:0.33 QI:0|0.5|0.33|1|0|0|3|0|242; (*GB) gi|359474296|ref|XP_002273128.2| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100251848 [Vitis vinifera];; (*TAIR) AT5G41470.1 (e_value=4e-42) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:16593953-16595419 FORWARD LENGTH=277;; (*ITAG) Solyc08g081450.2.1 (e_value=3e-91) genomic_reference:SL2.40ch08 gene_region:61673898-61675564 transcript_region:SL2.40ch08:61673898..61675564+ go_terms:GO:0008565 functional_description:"Nuclear transport factor 2 (NTF2)-like protein (AHRD V1 ***- Q67TV4_ORYSJ)"; GO:0008565 NbS00009190g0006.1 protein AED:0.00 eAED:0.00 QI:137|1|1|1|0.5|0.33|3|471|84 NbS00025144g0007.1 protein AED:0.15 eAED:0.19 QI:0|0.88|0.85|1|0.85|0.85|28|648|1278; (*GB) gi|225438458|ref|XP_002275101.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266278 [Vitis vinifera];; (*TAIR) AT2G07360.1 (e_value=0.0) | Symbols: | SH3 domain-containing protein | chr2:3047623-3057099 REVERSE LENGTH=1196;; (*ITAG) Solyc05g025740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:36208691-36250687 transcript_region:SL2.40ch05:36208691..36250687- functional_description:"SH3 domain-containing protein (AHRD V1 ***- D7LA99_ARALY); contains Interpro domain(s) IPR001452 Src homology-3 domain "; NbS00018071g0004.1 protein AED:0.14 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|456; (*GB) gi|189909333|gb|ACE60602.1| (e_value=0.0) putative galactomannan galactosyl transferase [Coffea arabica];; (*SWP) sp|O81007|GT7_ARATH (e_value=0.0) Putative glycosyltransferase 7 OS=Arabidopsis thaliana GN=GT7 PE=2 SV=1;; (*TAIR) AT2G22900.1 (e_value=0.0) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr2:9744359-9746193 REVERSE LENGTH=449;; (*ITAG) Solyc03g043920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11602632-11605461 transcript_region:SL2.40ch03:11602632..11605461- go_terms:GO:0016757 functional_description:"Alpha-6-galactosyltransferase (AHRD V1 **-- Q5TIN0_MEDTR); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0016757 NbS00018071g0015.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0.5|1|3|0|400; (*GB) gi|224127168|ref|XP_002320004.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=7e-44) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT4G37680.2 (e_value=0.0) | Symbols: HHP4 | heptahelical protein 4 | chr4:17701231-17702568 FORWARD LENGTH=385;; (*ITAG) Solyc02g092230.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47956191-47959512 transcript_region:SL2.40ch02:47956191..47959512- go_terms:GO:0004872 functional_description:"Adiponectin receptor 2 (AHRD V1 *-** Q5TYU5_DANRE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872 NbS00018071g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|443; (*GB) gi|55956978|emb|CAI11453.1| (e_value=0.0) alpha-6-galactosyltransferase [Nicotiana benthamiana];; (*SWP) sp|Q9SZG1|GT6_ARATH (e_value=2e-175) Glycosyltransferase 6 OS=Arabidopsis thaliana GN=GT6 PE=2 SV=1;; (*TAIR) AT4G37690.1 (e_value=2e-176) | Symbols: | Galactosyl transferase GMA12/MNN10 family protein | chr4:17708303-17709601 FORWARD LENGTH=432;; (*ITAG) Solyc02g092210.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47942901-47944232 transcript_region:SL2.40ch02:47942901..47944232+ go_terms:GO:0016757 functional_description:"Alpha-6-galactosyltransferase (AHRD V1 **-- Q5TIN2_SOLTU); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0016757 NbS00018071g0014.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|110; (*ITAG) Solyc02g092200.2.1 (e_value=6e-20) genomic_reference:SL2.40ch02 gene_region:47939396-47940657 transcript_region:SL2.40ch02:47939396..47940657+ functional_description:"Genomic DNA chromosome 5 TAC clone K9I9 (AHRD V1 *-*- Q9FJV9_ARATH)"; NbS00029135g0012.1 protein AED:0.04 eAED:0.05 QI:0|0.33|0|1|0.33|0.25|4|0|1103; (*GB) gi|359495205|ref|XP_002263569.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110-like [Vitis vinifera];; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT1G34110.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:12417331-12421246 REVERSE LENGTH=1072;; (*ITAG) Solyc00g009090.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8783468-8787035 transcript_region:SL2.40ch00:8783468..8787035- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00029135g0002.1 protein AED:0.21 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|224082514|ref|XP_002306724.1| (e_value=8e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71740.1 (e_value=7e-20) | Symbols: | unknown protein; Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26987245-26987637 FORWARD LENGTH=130;; (*ITAG) Solyc00g009070.1.1 (e_value=1e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:8775151-8775537 transcript_region:SL2.40ch00:8775151..8775537- functional_description:"Unknown Protein (AHRD V1)"; NbS00029135g0011.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|0|0.5|2|389|144 NbS00017224g0010.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|224130152|ref|XP_002320765.1| (e_value=4e-84) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=2e-15) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=1e-16) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc01g091760.2.1 (e_value=2e-98) genomic_reference:SL2.40ch01 gene_region:77102050-77103010 transcript_region:SL2.40ch01:77102050..77103010- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017224g0005.1 protein AED:0.10 eAED:0.12 QI:0|0.66|0.5|1|1|1|4|0|553; (*GB) gi|147775384|emb|CAN78184.1| (e_value=2e-26) hypothetical protein VITISV_031283 [Vitis vinifera];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=1e-21) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G16857.2 (e_value=1e-22) | Symbols: ARR1, RR1 | response regulator 1 | chr3:5756113-5759139 FORWARD LENGTH=690;; (*ITAG) Solyc01g091810.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77126098-77128541 transcript_region:SL2.40ch01:77126098..77128541- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 10 (AHRD V1 *-*- Q948L2_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0006355,GO:0045449 NbS00017224g0033.1 protein AED:0.13 eAED:0.13 QI:392|0.85|0.87|1|0.71|0.75|8|169|588; (*GB) gi|225453885|ref|XP_002273159.1| (e_value=0.0) PREDICTED: flap endonuclease GEN-like 1 [Vitis vinifera];; (*SWP) sp|Q9LPD2|GENL1_ARATH (e_value=0.0) Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2 SV=3;; (*TAIR) AT1G01880.1 (e_value=0.0) | Symbols: | 5'-3' exonuclease family protein | chr1:306558-308991 REVERSE LENGTH=599;; (*ITAG) Solyc01g091820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77129836-77135609 transcript_region:SL2.40ch01:77129836..77135609- go_terms:GO:0048256,GO:0003697,GO:0003690 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-** D7DTU0_METV3); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0048256,GO:0003697,GO:0003690 NbS00017224g0029.1 protein AED:0.32 eAED:0.32 QI:0|0.83|0.85|0.85|0.66|0.85|7|333|279; (*GB) gi|225453750|ref|XP_002273751.1| (e_value=1e-107) PREDICTED: arginine/serine-rich-splicing factor RSP40-like [Vitis vinifera];; (*SWP) sp|P92965|RSP40_ARATH (e_value=2e-77) Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2;; (*TAIR) AT4G25500.4 (e_value=2e-78) | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350;; (*ITAG) Solyc01g091750.2.1 (e_value=2e-100) genomic_reference:SL2.40ch01 gene_region:77096104-77100887 transcript_region:SL2.40ch01:77096104..77100887- go_terms:GO:0003676,GO:0000166 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 ***- D8L816_9POAL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00017224g0035.1 protein AED:0.30 eAED:0.34 QI:33|0.66|0.8|1|0.55|0.7|10|543|278; (*GB) gi|225453766|ref|XP_002270274.1| (e_value=4e-128) PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis vinifera];; (*SWP) sp|Q6ME80|RSMA_PARUW (e_value=5e-50) Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia amoebophila (strain UWE25) GN=rsmA PE=3 SV=2;; (*TAIR) AT1G01860.1 (e_value=6e-123) | Symbols: PFC1 | Ribosomal RNA adenine dimethylase family protein | chr1:304439-306275 REVERSE LENGTH=343;; (*ITAG) Solyc01g091800.2.1 (e_value=4e-151) genomic_reference:SL2.40ch01 gene_region:77119410-77125807 transcript_region:SL2.40ch01:77119410..77125807- go_terms:GO:0000154,GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase A (AHRD V1 ***- D6YS21_WADCW); contains Interpro domain(s) IPR011530 rRNA adenine dimethylase "; GO:0000154,GO:0006364 NbS00017224g0037.1 protein AED:0.07 eAED:0.07 QI:63|0.33|0.5|0.75|0.66|0.75|4|0|421; (*GB) gi|359489528|ref|XP_003633933.1| (e_value=3e-45) PREDICTED: uncharacterized protein LOC100854402 [Vitis vinifera];; (*TAIR) AT4G00770.1 (e_value=3e-12) | Symbols: | unknown protein; Has 127 Blast hits to 120 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 62; Viruses - 3; Other Eukaryotes - 46 (source: NCBI BLink). | chr4:331195-333050 FORWARD LENGTH=440;; (*ITAG) Solyc01g091830.2.1 (e_value=5e-145) genomic_reference:SL2.40ch01 gene_region:77142469-77144729 transcript_region:SL2.40ch01:77142469..77144729+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017224g0039.1 protein AED:0.20 eAED:0.20 QI:420|1|0.66|1|1|1|3|0|202; (*GB) gi|255541456|ref|XP_002511792.1| (e_value=1e-91) ring finger protein, putative [Ricinus communis];; (*SWP) sp|P93823|ATL1_ARATH (e_value=8e-20) RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1;; (*TAIR) AT1G04360.1 (e_value=6e-21) | Symbols: | RING/U-box superfamily protein | chr1:1167507-1168652 REVERSE LENGTH=381;; (*ITAG) Solyc01g091770.2.1 (e_value=6e-123) genomic_reference:SL2.40ch01 gene_region:77108483-77111321 transcript_region:SL2.40ch01:77108483..77111321+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017224g0031.1 protein AED:0.25 eAED:0.25 QI:131|1|1|1|1|1|9|249|334; (*GB) gi|225453762|ref|XP_002274443.1| (e_value=2e-176) PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LEW8|FN3KR_ARATH (e_value=2e-165) Protein-ribulosamine 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=At3g61080 PE=1 SV=2;; (*TAIR) AT3G61080.1 (e_value=2e-166) | Symbols: | Protein kinase superfamily protein | chr3:22607152-22608883 FORWARD LENGTH=326;; (*ITAG) Solyc01g091780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77112343-77117902 transcript_region:SL2.40ch01:77112343..77117902+ functional_description:"Fructosamine kinase family protein (AHRD V1 ***- D7LS54_ARALY); contains Interpro domain(s) IPR016477 Fructosamine/Ketosamine-3-kinase "; NbS00017224g0007.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|190; (*GB) gi|224127522|ref|XP_002320095.1| (e_value=7e-28) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g091790.2.1 (e_value=8e-50) genomic_reference:SL2.40ch01 gene_region:77118580-77119211 transcript_region:SL2.40ch01:77118580..77119211+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022294g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|0.66|0.5|4|441|310; (*GB) gi|82400132|gb|ABB72805.1| (e_value=0.0) Per1-like family protein [Solanum tuberosum];; (*SWP) sp|Q68EV0|PGAP3_XENLA (e_value=2e-44) Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3 PE=2 SV=1;; (*TAIR) AT5G62130.1 (e_value=2e-148) | Symbols: | Per1-like family protein | chr5:24950685-24952918 REVERSE LENGTH=343;; (*ITAG) Solyc06g035690.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:21403448-21409621 transcript_region:SL2.40ch06:21403448..21409621+ go_terms:GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_XENTR); contains Interpro domain(s) IPR007217 Per1-like "; GO:0016788 NbS00030662g0110.1 protein AED:0.10 eAED:0.10 QI:315|1|1|1|0.62|0.33|9|520|579 NbS00030662g0111.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|167 NbS00018376g0008.1 protein AED:0.05 eAED:0.05 QI:23|0|0.5|1|0|0|2|0|337; (*GB) gi|284449851|emb|CBJ19440.1| (e_value=5e-119) SLAC-homologous 1 protein [Citrus clementina];; (*SWP) sp|Q5E930|SLAH1_ARATH (e_value=3e-99) S-type anion channel SLAH1 OS=Arabidopsis thaliana GN=SLAH1 PE=2 SV=1;; (*TAIR) AT1G62280.1 (e_value=2e-100) | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007309-23008540 REVERSE LENGTH=385;; (*ITAG) Solyc07g051950.2.1 (e_value=9e-160) genomic_reference:SL2.40ch07 gene_region:57828047-57830728 transcript_region:SL2.40ch07:57828047..57830728- go_terms:GO:0016021 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 ***- D7KUS7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0016021 NbS00056572g0006.1 protein AED:0.13 eAED:0.13 QI:195|0.90|0.75|1|0.90|0.91|12|0|1143; (*GB) gi|374095611|gb|AEY85033.1| (e_value=0.0) xanthine dehydrogenase [Camellia sinensis];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=0.0) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=0.0) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbC25860923g0002.1 protein AED:0.22 eAED:0.35 QI:0|0|0|1|0|0.16|6|0|372; (*GB) gi|357510403|ref|XP_003625490.1| (e_value=1e-51) p-hydroxybenzoic acid efflux pump subunit aaeB [Medicago truncatula];; (*TAIR) AT2G28780.1 (e_value=7e-31) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc10g084720.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63463824-63467514 transcript_region:SL2.40ch10:63463824..63467514- functional_description:"Unknown Protein (AHRD V1)"; NbS00052261g0004.1 protein AED:0.09 eAED:0.09 QI:436|1|1|1|1|1|2|673|142; (*GB) gi|255540519|ref|XP_002511324.1| (e_value=2e-40) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q6UWE0|LRSM1_HUMAN (e_value=1e-13) E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1;; (*TAIR) AT5G05850.1 (e_value=2e-39) | Symbols: PIRL1 | plant intracellular ras group-related LRR 1 | chr5:1762691-1764609 REVERSE LENGTH=506;; (*ITAG) Solyc03g112270.2.1 (e_value=2e-49) genomic_reference:SL2.40ch03 gene_region:56776658-56780829 transcript_region:SL2.40ch03:56776658..56780829- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00004167g0007.1 protein AED:0.12 eAED:0.12 QI:538|1|0.83|1|0.6|0.66|6|0|401; (*GB) gi|114324644|gb|ABI63627.1| (e_value=0.0) solanesyl diphosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q8S948|SPS1_ARATH (e_value=0.0) Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1;; (*TAIR) AT1G78510.1 (e_value=0.0) | Symbols: SPS1 | solanesyl diphosphate synthase 1 | chr1:29535410-29537163 REVERSE LENGTH=406;; (*ITAG) Solyc07g061990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62080839-62085428 transcript_region:SL2.40ch07:62080839..62085428- go_terms:GO:0050347 functional_description:"Solanesyl diphosphate synthase (AHRD V1 ***- Q09IV6_SOLLC); contains Interpro domain(s) IPR014120 Solanesyl diphosphate synthase "; GO:0050347 NbS00004167g0006.1 protein AED:0.38 eAED:0.38 QI:0|1|0.75|1|1|1|4|171|165; (*GB) gi|225461838|ref|XP_002283744.1| (e_value=1e-78) PREDICTED: mitochondrial inner membrane protease subunit 1 [Vitis vinifera];; (*SWP) sp|Q28I39|IMP1L_XENTR (e_value=3e-35) Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis GN=immp1l PE=2 SV=1;; (*TAIR) AT1G53530.1 (e_value=2e-76) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:19978249-19979778 FORWARD LENGTH=168;; (*ITAG) Solyc02g068390.2.1 (e_value=2e-107) genomic_reference:SL2.40ch02 gene_region:32919197-32922504 transcript_region:SL2.40ch02:32919197..32922504+ go_terms:GO:0004252,GO:0004222 functional_description:"Mitochondrial inner membrane protease subunit 1 (AHRD V1 **-- B6T7U7_MAIZE); contains Interpro domain(s) IPR000223 Peptidase S26A, signal peptidase I "; GO:0004252,GO:0004222 NbS00015730g0001.1 protein AED:0.14 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|188; (*ITAG) Solyc01g109730.1.1 (e_value=3e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00049739g0001.1 protein AED:0.15 eAED:0.15 QI:69|1|0.5|1|0|0|2|0|63 NbC25288816g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|66; (*GB) gi|209168551|gb|ACI42271.1| (e_value=3e-20) glutathione S-transferase Tau2 [Citrus sinensis];; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=2e-20) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G17190.1 (e_value=1e-18) | Symbols: ATGSTU26, GSTU26 | glutathione S-transferase tau 26 | chr1:5875452-5876375 FORWARD LENGTH=220;; (*ITAG) Solyc10g007620.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:1919334-1920575 transcript_region:SL2.40ch10:1919334..1920575- go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** A1YW90_VITVI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00005063g0005.1 protein AED:0.04 eAED:0.04 QI:166|0.5|1|1|0|0.33|3|238|274; (*GB) gi|225429706|ref|XP_002281808.1| (e_value=2e-114) PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase isoform 1 [Vitis vinifera];; (*TAIR) AT4G33180.1 (e_value=1e-104) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:16000282-16002055 FORWARD LENGTH=307;; (*ITAG) Solyc08g061240.1.1 (e_value=4e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45463667-45464335 transcript_region:SL2.40ch08:45463667..45464335- go_terms:GO:0003824 functional_description:"Catalytic/ hydrolase (AHRD V1 **** B6TP84_MAIZE); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0003824 NbS00005063g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.33|1|1|3|0|180; (*GB) gi|225453877|ref|XP_002278630.1| (e_value=2e-74) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*SWP) sp|Q2V4F9|SPXM1_ARATH (e_value=2e-69) SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=1 SV=1;; (*TAIR) AT1G63010.4 (e_value=1e-70) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr1:23347972-23351026 REVERSE LENGTH=699;; (*ITAG) Solyc01g091870.2.1 (e_value=6e-79) genomic_reference:SL2.40ch01 gene_region:77173358-77180168 transcript_region:SL2.40ch01:77173358..77180168+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_XENLA); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0055085 NbS00043733g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|240; (*GB) gi|225438571|ref|XP_002276210.1| (e_value=1e-97) PREDICTED: uncharacterized protein LOC100266423 [Vitis vinifera];; (*TAIR) AT2G21990.1 (e_value=7e-94) | Symbols: | Protein of unknown function, DUF617 | chr2:9359573-9360331 REVERSE LENGTH=252;; (*ITAG) Solyc04g053140.1.1 (e_value=5e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50902198-50902908 transcript_region:SL2.40ch04:50902198..50902908- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6TX93_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00038233g0001.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|1|1|2|0|113; (*GB) gi|359484691|ref|XP_003633146.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100852953 [Vitis vinifera];; (*TAIR) AT5G11090.1 (e_value=4e-15) | Symbols: | serine-rich protein-related | chr5:3524796-3525449 FORWARD LENGTH=217;; (*ITAG) Solyc07g007330.1.1 (e_value=4e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2067659-2068279 transcript_region:SL2.40ch07:2067659..2068279+ functional_description:"Serine-rich protein (AHRD V1 ***- A1YMW6_BRACM)"; NbS00051009g0007.1 protein AED:0.23 eAED:0.24 QI:24|1|0.91|1|0.63|0.75|12|1070|694; (*GB) gi|224099297|ref|XP_002311428.1| (e_value=4e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8ND56|LS14A_HUMAN (e_value=4e-18) Protein LSM14 homolog A OS=Homo sapiens GN=LSM14A PE=1 SV=3;; (*TAIR) AT1G26110.2 (e_value=3e-36) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc06g069280.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39428427-39437309 transcript_region:SL2.40ch06:39428427..39437309- functional_description:"Protein LSM14 homolog A (AHRD V1 *--- LS14A_PONAB); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00019551g0012.1 protein AED:0.15 eAED:0.15 QI:0|0.85|0.76|1|0.7|0.76|21|296|1137; (*GB) gi|225428772|ref|XP_002282024.1| (e_value=0.0) PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LJL3|PREP1_ARATH (e_value=0.0) Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2;; (*TAIR) AT3G19170.1 (e_value=0.0) | Symbols: ATPREP1, ATZNMP, PREP1 | presequence protease 1 | chr3:6625578-6631874 REVERSE LENGTH=1080;; (*ITAG) Solyc01g108600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87613555-87626715 transcript_region:SL2.40ch01:87613555..87626715+ go_terms:GO:0004222 functional_description:"Presequence protease, mitochondrial (AHRD V1 **-- PREP_DANRE); contains Interpro domain(s) IPR013578 Peptidase M16C associated "; GO:0004222 NbS00019551g0013.1 protein AED:0.21 eAED:0.24 QI:0|0|0|1|0|0|6|0|545; (*GB) gi|255555507|ref|XP_002518790.1| (e_value=5e-121) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9ZQ91|CXE7_ARATH (e_value=4e-94) Probable carboxylesterase 7 OS=Arabidopsis thaliana GN=CXE7 PE=2 SV=1;; (*TAIR) AT2G03550.1 (e_value=3e-95) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:1077080-1078018 FORWARD LENGTH=312;; (*ITAG) Solyc01g108580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87599060-87600395 transcript_region:SL2.40ch01:87599060..87600395+ go_terms:GO:0004806 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6TRC0_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004806 NbS00052768g0001.1 protein AED:0.19 eAED:0.57 QI:0|0|0|0.66|1|1|3|0|228; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=3e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00053229g0002.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|1|1|2|0|146; (*GB) gi|147865076|emb|CAN83233.1| (e_value=2e-60) hypothetical protein VITISV_005768 [Vitis vinifera];; (*SWP) sp|Q9C8J6|PLA17_ARATH (e_value=3e-56) Phospholipase A1-Igamma3, chloroplastic OS=Arabidopsis thaliana GN=At1g51440 PE=1 SV=1;; (*TAIR) AT1G51440.1 (e_value=2e-57) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:19070971-19072554 FORWARD LENGTH=527;; (*ITAG) Solyc11g065530.1.1 (e_value=7e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48054992-48056506 transcript_region:SL2.40ch11:48054992..48056506- go_terms:GO:0006629 functional_description:"Lipase (Fragment) (AHRD V1 ***- Q9ZTW1_DIACA); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00004337g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|225426596|ref|XP_002280209.1| (e_value=5e-85) PREDICTED: uncharacterized protein LOC100242761 [Vitis vinifera];; (*TAIR) AT4G24130.1 (e_value=7e-79) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc08g083090.1.1 (e_value=3e-92) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:62825827-62826291 transcript_region:SL2.40ch08:62825827..62826291+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00004337g0006.1 protein AED:0.35 eAED:0.39 QI:0|0|0|1|0|0|2|0|108 NbS00050903g0001.1 protein AED:0.35 eAED:0.35 QI:569|1|0.75|1|1|1|4|0|297; (*GB) gi|380702814|gb|AFD96389.1| (e_value=3e-178) nodulin 26-like intrinsic protein [Solanum tuberosum];; (*SWP) sp|Q9SV84|NIP51_ARATH (e_value=6e-137) Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1;; (*TAIR) AT4G10380.1 (e_value=5e-138) | Symbols: NIP5;1, NLM6, NLM8 | NOD26-like intrinsic protein 5;1 | chr4:6431530-6434510 REVERSE LENGTH=304;; (*ITAG) Solyc08g013730.2.1 (e_value=2e-179) genomic_reference:SL2.40ch08 gene_region:3092331-3096242 transcript_region:SL2.40ch08:3092331..3096242- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR000425 Major intrinsic protein "; GO:0015250 NbS00050903g0009.1 protein AED:0.29 eAED:0.29 QI:104|1|1|1|0.85|1|8|547|320; (*GB) gi|225464726|ref|XP_002264202.1| (e_value=3e-118) PREDICTED: uncharacterized protein LOC100265576 [Vitis vinifera];; (*TAIR) AT5G44600.1 (e_value=5e-103) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:17989867-17991519 FORWARD LENGTH=333;; (*ITAG) Solyc08g013720.2.1 (e_value=3e-176) genomic_reference:SL2.40ch08 gene_region:3084903-3091682 transcript_region:SL2.40ch08:3084903..3091682+ functional_description:"Genomic DNA chromosome 5 TAC clone K15C23 (AHRD V1 **-- Q9LU06_ARATH)"; NbS00055827g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|316; (*GB) gi|225455856|ref|XP_002274167.1| (e_value=3e-36) PREDICTED: uncharacterized protein LOC100245771 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-19) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G49010.1 (e_value=8e-36) | Symbols: | Duplicated homeodomain-like superfamily protein | chr1:18132714-18133778 FORWARD LENGTH=314;; (*ITAG) Solyc02g082390.1.1 (e_value=9e-90) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:40648989-40650002 transcript_region:SL2.40ch02:40648989..40650002- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00029789g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.88|0.8|1|1|1|10|0|329; (*GB) gi|225458167|ref|XP_002281042.1| (e_value=0.0) PREDICTED: GTPase HflX-like [Vitis vinifera];; (*SWP) sp|D3FTV4|HFLX_BACPE (e_value=2e-64) GTPase HflX OS=Bacillus pseudofirmus (strain OF4) GN=hflX PE=3 SV=1;; (*TAIR) AT5G57960.1 (e_value=3e-178) | Symbols: | GTP-binding protein, HflX | chr5:23463133-23466481 REVERSE LENGTH=540;; (*ITAG) Solyc04g080770.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62453995-62459810 transcript_region:SL2.40ch04:62453995..62459810- go_terms:GO:0005525 functional_description:"GTP-binding protein hflX (AHRD V1 **** B6SXP6_MAIZE); contains Interpro domain(s) IPR016496 GTP-binding protein, HflX "; GO:0005525 NbS00015003g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.66|3|395|922; (*GB) gi|356539781|ref|XP_003538372.1| (e_value=2e-12) PREDICTED: FACT complex subunit SPT16-like isoform 1 [Glycine max];; (*ITAG) Solyc02g081590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40060928-40063885 transcript_region:SL2.40ch02:40060928..40063885+ functional_description:"FACT complex subunit SPT16 (AHRD V1 *-*- SPT16_ARATH)"; NbS00015003g0009.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0|0|3|0|283; (*GB) gi|225423617|ref|XP_002274548.1| (e_value=6e-87) PREDICTED: zinc transporter 5 isoform 1 [Vitis vinifera];; (*SWP) sp|Q7XLD4|ZIP3_ORYSJ (e_value=4e-54) Zinc transporter 3 OS=Oryza sativa subsp. japonica GN=ZIP3 PE=1 SV=2;; (*TAIR) AT3G12750.1 (e_value=5e-54) | Symbols: ZIP1 | zinc transporter 1 precursor | chr3:4051950-4053156 REVERSE LENGTH=355;; (*ITAG) Solyc02g081600.2.1 (e_value=1e-127) genomic_reference:SL2.40ch02 gene_region:40070162-40072548 transcript_region:SL2.40ch02:40070162..40072548+ go_terms:GO:0000007 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000007 NbS00025914g0006.1 protein AED:0.20 eAED:0.20 QI:344|0.75|0.8|1|0.75|0.8|5|379|148; (*GB) gi|350536447|ref|NP_001234247.1| (e_value=6e-107) ubiquitin-conjugating enzyme E2-17 kDa [Solanum lycopersicum];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=2e-108) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G64230.2 (e_value=1e-107) | Symbols: UBC28 | ubiquitin-conjugating enzyme 28 | chr1:23833792-23835220 FORWARD LENGTH=148;; (*ITAG) Solyc06g082600.2.1 (e_value=1e-109) genomic_reference:SL2.40ch06 gene_region:44657000-44661486 transcript_region:SL2.40ch06:44657000..44661486- go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2-like protein (AHRD V1 **** Q2PYY4_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00025914g0008.1 protein AED:0.23 eAED:0.23 QI:0|1|0.83|1|1|1|6|0|412; (*GB) gi|1709798|sp|P54778.1|PRS6B_SOLTU (e_value=0.0) RecName: Full=26S protease regulatory subunit 6B homolog;; (*SWP) sp|P54778|PRS6B_SOLTU (e_value=0.0) 26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G58290.1 (e_value=0.0) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082630.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44672378-44677754 transcript_region:SL2.40ch06:44672378..44677754- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00024227g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0.66|1|1|1|3|0|535; (*GB) gi|356542942|ref|XP_003539923.1| (e_value=7e-150) PREDICTED: uncharacterized protein LOC100810231 isoform 2 [Glycine max];; (*TAIR) AT4G28300.1 (e_value=6e-87) | Symbols: | Protein of unknown function (DUF1421) | chr4:14014860-14016823 FORWARD LENGTH=496;; (*ITAG) Solyc07g053990.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59725634-59729577 transcript_region:SL2.40ch07:59725634..59729577- functional_description:"Os05g0169400 protein (Fragment) (AHRD V1 *-*- Q0DKE7_ORYSJ); contains Interpro domain(s) IPR010820 Protein of unknown function DUF1421 "; NbS00040427g0014.1 protein AED:0.19 eAED:0.19 QI:231|1|1|1|1|1|3|266|426; (*GB) gi|224143803|ref|XP_002336081.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FMF5|RPT3_ARATH (e_value=7e-77) Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2;; (*TAIR) AT1G52770.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:19656009-19657546 FORWARD LENGTH=454;; (*ITAG) Solyc03g119960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62531674-62533441 transcript_region:SL2.40ch03:62531674..62533441- go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L4V2_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00040427g0003.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.4|1|1|1|5|0|657; (*GB) gi|6226239|sp|O24381.2|TLC1_SOLTU (e_value=0.0) RecName: Full=Plastidic ATP/ADP-transporter;; (*SWP) sp|O24381|TLC1_SOLTU (e_value=0.0) Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT1G80300.1 (e_value=0.0) | Symbols: NTT1, ATNTT1 | nucleotide transporter 1 | chr1:30191954-30194280 FORWARD LENGTH=624;; (*ITAG) Solyc03g119970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62535671-62539365 transcript_region:SL2.40ch03:62535671..62539365- go_terms:GO:0005515 functional_description:"ADP ATP carrier protein (AHRD V1 ***- Q3KMV6_CHLTA); contains Interpro domain(s) IPR004667 ADP/ATP carrier protein "; GO:0005515 NbS00040427g0008.1 protein AED:0.32 eAED:0.40 QI:0|0|0|0.5|1|1|4|0|538; (*GB) gi|255553015|ref|XP_002517550.1| (e_value=0.0) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q0WP36|MOT2_ARATH (e_value=1e-162) Molybdate transporter 2 OS=Arabidopsis thaliana GN=MOT2 PE=1 SV=2;; (*TAIR) AT1G80310.1 (e_value=1e-163) | Symbols: | sulfate transmembrane transporters | chr1:30194951-30196345 FORWARD LENGTH=464;; (*ITAG) Solyc03g119930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62520142-62521518 transcript_region:SL2.40ch03:62520142..62521518- go_terms:GO:0015116,GO:0015098 functional_description:"Sulfate transporter like protein (AHRD V1 **** Q0WP36_ARATH); contains Interpro domain(s) IPR011547 Sulphate transporter "; GO:0015116,GO:0015098 NbS00040427g0016.1 protein AED:0.02 eAED:0.02 QI:151|1|0.85|1|0.5|0.57|7|0|781; (*GB) gi|359482658|ref|XP_002285224.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251511 [Vitis vinifera];; (*TAIR) AT3G15550.1 (e_value=0.0) | Symbols: | unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). | chr3:5267351-5270095 FORWARD LENGTH=729;; (*ITAG) Solyc03g119940.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62523753-62527315 transcript_region:SL2.40ch03:62523753..62527315+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040427g0020.1 protein AED:0.41 eAED:0.43 QI:0|0.25|0|1|0|0|5|0|143; (*GB) gi|296086881|emb|CBI33054.3| (e_value=1e-14) unnamed protein product [Vitis vinifera];; (*SWP) sp|P09186|LOX3_SOYBN (e_value=1e-12) Seed linoleate 9S-lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1;; (*TAIR) AT3G22400.1 (e_value=1e-12) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc09g055890.2.1 (e_value=1e-28) genomic_reference:SL2.40ch09 gene_region:41661108-41663614 transcript_region:SL2.40ch09:41661108..41663614+ go_terms:GO:0046872,GO:0055114 functional_description:"Lipoxygenase (AHRD V1 ***- B9SMP7_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0046872,GO:0055114 NbS00040427g0019.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|0|0|2|0|763; (*GB) gi|359482660|ref|XP_002285225.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9M9E2|PPR45_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1;; (*TAIR) AT1G15510.1 (e_value=0.0) | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:5329111-5331711 FORWARD LENGTH=866;; (*ITAG) Solyc03g119950.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62528256-62530886 transcript_region:SL2.40ch03:62528256..62530886- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KDG7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00023036g0003.1 protein AED:0.12 eAED:0.12 QI:83|1|1|1|1|1|3|222|225; (*GB) gi|359477222|ref|XP_002277268.2| (e_value=3e-117) PREDICTED: seed maturation protein PM36 [Vitis vinifera];; (*SWP) sp|Q9SWB6|PM36_SOYBN (e_value=1e-109) Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1;; (*TAIR) AT3G16990.1 (e_value=2e-103) | Symbols: | Haem oxygenase-like, multi-helical | chr3:5795937-5796783 REVERSE LENGTH=221;; (*ITAG) Solyc11g007570.1.1 (e_value=2e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1807764-1810504 transcript_region:SL2.40ch11:1807764..1810504+ functional_description:"Transcriptional activator (AHRD V1 ***- C3FFU8_BACTB); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00042078g0004.1 protein AED:0.07 eAED:0.07 QI:24|0.33|0.75|1|0.66|0.75|4|327|467; (*GB) gi|306849481|gb|ADN06440.1| (e_value=0.0) invertase [Solanum tuberosum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.1 (e_value=0.0) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19509273 REVERSE LENGTH=590;; (*ITAG) Solyc10g083300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62447632-62451825 transcript_region:SL2.40ch10:62447632..62451825- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00016699g0021.1 protein AED:0.22 eAED:0.22 QI:207|1|1|1|1|1|8|225|479; (*GB) gi|225428408|ref|XP_002283712.1| (e_value=0.0) PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q949X7|DCDA1_ARATH (e_value=0.0) Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1;; (*TAIR) AT3G14390.1 (e_value=0.0) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484;; (*ITAG) Solyc01g109850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88449072-88454711 transcript_region:SL2.40ch01:88449072..88454711- go_terms:GO:0004040,GO:0008836 functional_description:"Diaminopimelate decarboxylase (AHRD V1 **** D2DKE7_SOYBN); contains Interpro domain(s) IPR002986 Diaminopimelate decarboxylase "; GO:0004040,GO:0008836 NbS00016699g0005.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|1|1|2|0|237; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-36) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016699g0019.1 protein AED:0.33 eAED:0.35 QI:0|0.7|0.63|1|0.8|0.90|11|182|635; (*GB) gi|255543761|ref|XP_002512943.1| (e_value=0.0) phosphatidylinositol transporter, putative [Ricinus communis];; (*SWP) sp|P24859|SEC14_KLULA (e_value=5e-35) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G21520.2 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr2:9215956-9218953 FORWARD LENGTH=637;; (*ITAG) Solyc01g109870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88463446-88468885 transcript_region:SL2.40ch01:88463446..88468885- go_terms:GO:0005622 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T026_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005622 NbS00016699g0024.1 protein AED:0.75 eAED:0.78 QI:0|0|0|0.66|0.2|0.16|6|0|239 NbS00016699g0022.1 protein AED:0.09 eAED:0.09 QI:81|0.72|0.83|1|0.72|0.75|12|246|542; (*GB) gi|255543759|ref|XP_002512942.1| (e_value=0.0) Sec14 cytosolic factor, putative [Ricinus communis];; (*SWP) sp|P45816|SEC14_YARLI (e_value=1e-48) SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2;; (*TAIR) AT2G18180.1 (e_value=0.0) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr2:7911054-7913695 REVERSE LENGTH=558;; (*ITAG) Solyc01g109860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88459612-88463165 transcript_region:SL2.40ch01:88459612..88463165+ go_terms:GO:0008526 functional_description:"Phosphatidylinositol/phosphatidylcholine transfer protein-like (AHRD V1 **-* Q9LRX7_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00034265g0001.1 protein AED:0.01 eAED:0.01 QI:50|0.5|0.66|1|0|0|3|242|214; (*GB) gi|357462383|ref|XP_003601473.1| (e_value=7e-42) Glucan endo-1,3-beta-glucosidase [Medicago truncatula];; (*SWP) sp|O65399|E131_ARATH (e_value=1e-19) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G79480.2 (e_value=3e-35) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:29897905-29899267 REVERSE LENGTH=396;; (*ITAG) Solyc05g016390.2.1 (e_value=4e-48) genomic_reference:SL2.40ch05 gene_region:16038482-16039802 transcript_region:SL2.40ch05:16038482..16039802- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00034265g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.33|3|856|487; (*GB) gi|193290722|gb|ACF17669.1| (e_value=0.0) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*SWP) sp|Q1XDM0|ODPA_PORYE (e_value=2e-152) Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1;; (*TAIR) AT1G01090.1 (e_value=0.0) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00020902g0004.1 protein AED:0.24 eAED:0.24 QI:406|0.5|0.42|1|0.16|0.57|7|0|734; (*GB) gi|224111286|ref|XP_002315804.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W4I4|POT6_ARATH (e_value=0.0) Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=0.0) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc05g005740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:553397-558860 transcript_region:SL2.40ch05:553397..558860+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** D2JYH2_GOSHI); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00033434g0005.1 protein AED:0.06 eAED:0.06 QI:118|1|1|1|0.5|0.66|3|159|222; (*GB) gi|225461148|ref|XP_002282744.1| (e_value=6e-92) PREDICTED: oxygen-evolving enhancer protein 3-1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XFT3|PSBQ1_ARATH (e_value=6e-19) Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3;; (*TAIR) AT3G01440.1 (e_value=6e-83) | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168478-169407 FORWARD LENGTH=220;; (*ITAG) Solyc10g006530.2.1 (e_value=1e-31) genomic_reference:SL2.40ch10 gene_region:1096397-1098696 transcript_region:SL2.40ch10:1096397..1098696+ go_terms:GO:0019898 functional_description:"Oxygen evolving enhancer 3 family protein (AHRD V1 *-*- D7L9Q0_ARALY); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ "; GO:0019898 NbS00033434g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|359494858|ref|XP_003634855.1| (e_value=8e-61) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=7e-59) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT5G55910.1 (e_value=2e-62) | Symbols: D6PK | D6 protein kinase | chr5:22640055-22641634 REVERSE LENGTH=498;; (*ITAG) Solyc10g005770.2.1 (e_value=2e-63) genomic_reference:SL2.40ch10 gene_region:616539-620642 transcript_region:SL2.40ch10:616539..620642- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00013665g0004.1 protein AED:0.45 eAED:0.45 QI:0|0.2|0.33|0.66|0.4|0.66|6|236|136 NbS00020279g0015.1 protein AED:0.12 eAED:0.12 QI:1314|0.88|1|1|0.55|0.7|10|369|1043; (*GB) gi|255544506|ref|XP_002513314.1| (e_value=0.0) pumilio, putative [Ricinus communis];; (*SWP) sp|Q9LJX4|PUM5_ARATH (e_value=0.0) Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2;; (*TAIR) AT3G20250.1 (e_value=0.0) | Symbols: APUM5, PUM5 | pumilio 5 | chr3:7059098-7062660 REVERSE LENGTH=961;; (*ITAG) Solyc03g123980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64720811-64728947 transcript_region:SL2.40ch03:64720811..64728947+ go_terms:GO:0003723,GO:0005488 functional_description:"Pumilio-like protein (AHRD V1 ***- Q9SVZ7_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003723,GO:0005488 NbS00020279g0011.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|1|0.5|2|0|118; (*TAIR) AT1G16800.1 (e_value=6e-13) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:5745523-5755263 REVERSE LENGTH=2127;; (*ITAG) Solyc03g124010.2.1 (e_value=3e-39) genomic_reference:SL2.40ch03 gene_region:64763157-64776914 transcript_region:SL2.40ch03:64763157..64776914+ functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY)"; NbS00020279g0012.1 protein AED:0.13 eAED:0.13 QI:294|0.8|0.5|1|0.8|0.83|6|0|350; (*GB) gi|225443377|ref|XP_002266396.1| (e_value=3e-179) PREDICTED: protein brittle-1, chloroplastic/amyloplastic isoform 1 [Vitis vinifera];; (*SWP) sp|P29518|BT1_MAIZE (e_value=5e-47) Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1;; (*TAIR) AT3G20240.1 (e_value=7e-145) | Symbols: | Mitochondrial substrate carrier family protein | chr3:7057192-7058716 FORWARD LENGTH=348;; (*ITAG) Solyc03g123990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64729997-64734589 transcript_region:SL2.40ch03:64729997..64734589- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P8G6_COCP7); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00020279g0013.1 protein AED:0.35 eAED:0.51 QI:0|0.2|0|0.83|0|0|6|0|179; (*ITAG) Solyc10g049480.1.1 (e_value=3e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41390584-41395953 transcript_region:SL2.40ch10:41390584..41395953+ functional_description:"Abc transporter family protein (AHRD V1 *-*- D7LIF8_ARALY); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00020279g0014.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|69; (*ITAG) Solyc07g032800.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40911090-40913012 transcript_region:SL2.40ch07:40911090..40913012+ functional_description:"Replication protein A DNA-binding subunit (AHRD V1 ***- B6SL03_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00013866g0002.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|432; (*GB) gi|255585725|ref|XP_002533544.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|O81117|C94A1_VICSA (e_value=2e-100) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT2G27690.1 (e_value=1e-166) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc10g083400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62546111-62547604 transcript_region:SL2.40ch10:62546111..62547604- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00051796g0003.1 protein AED:0.37 eAED:0.37 QI:238|0.66|0.5|1|0.33|0.25|4|0|284; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=3e-97) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZSS6|THD1_ARATH (e_value=1e-87) Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=1e-88) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=6e-100) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00022333g0005.1 protein AED:0.11 eAED:0.11 QI:131|1|1|1|0|0.2|5|304|136; (*GB) gi|225456377|ref|XP_002284092.1| (e_value=4e-62) PREDICTED: HVA22-like protein e [Vitis vinifera];; (*SWP) sp|Q9FED2|HA22E_ARATH (e_value=1e-54) HVA22-like protein e OS=Arabidopsis thaliana GN=HVA22E PE=2 SV=1;; (*TAIR) AT5G50720.1 (e_value=8e-56) | Symbols: ATHVA22E, HVA22E | HVA22 homologue E | chr5:20633442-20634502 REVERSE LENGTH=116;; (*ITAG) Solyc03g097420.2.1 (e_value=6e-85) genomic_reference:SL2.40ch03 gene_region:53193862-53195036 transcript_region:SL2.40ch03:53193862..53195036+ go_terms:GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-- C1C4Y8_RANCA); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0042802 NbS00022333g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|74; (*GB) gi|356504256|ref|XP_003520913.1| (e_value=5e-34) PREDICTED: mitotic-spindle organizing protein 1B [Glycine max];; (*SWP) sp|Q9M0N8|MZT1B_ARATH (e_value=1e-28) Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana GN=At4g09550 PE=1 SV=1;; (*TAIR) AT4G09550.1 (e_value=1e-29) | Symbols: ATGIP1, GIP1 | AtGCP3 interacting protein 1 | chr4:6039706-6039921 FORWARD LENGTH=71;; (*ITAG) Solyc03g097400.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53177036-53177212 transcript_region:SL2.40ch03:53177036..53177212+ go_terms:GO:0005515 functional_description:"Mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1B (AHRD V1 ***- MZT1B_ARATH)"; GO:0005515 NbS00022333g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|104; (*GB) gi|224071373|ref|XP_002303428.1| (e_value=9e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SBA5|ITPK1_ARATH (e_value=1e-31) Inositol-tetrakisphosphate 1-kinase 1 OS=Arabidopsis thaliana GN=ITPK1 PE=2 SV=1;; (*TAIR) AT5G16760.1 (e_value=1e-32) | Symbols: | Inositol 1,3,4-trisphosphate 5/6-kinase family protein | chr5:5509890-5510849 FORWARD LENGTH=319;; (*ITAG) Solyc03g097410.1.1 (e_value=6e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53185449-53186414 transcript_region:SL2.40ch03:53185449..53186414+ go_terms:GO:0004428 functional_description:"Inositol-tetrakisphosphate 1-kinase 1 (AHRD V1 **** B6TJ44_MAIZE); contains Interpro domain(s) IPR008656 Inositol 1, 3, 4-trisphosphate 56-kinase "; GO:0004428 NbS00022333g0009.1 protein AED:0.12 eAED:0.15 QI:0|0|0|1|0|0|2|0|205; (*GB) gi|225456379|ref|XP_002284098.1| (e_value=3e-21) PREDICTED: uncharacterized protein LOC100266186 isoform 1 [Vitis vinifera];; (*ITAG) Solyc03g097430.1.1 (e_value=2e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53200335-53200982 transcript_region:SL2.40ch03:53200335..53200982+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057789g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|65 NbS00029775g0102.1 protein AED:0.01 eAED:0.01 QI:2544|-1|0|1|-1|1|1|1392|103 NbS00006872g0005.1 protein AED:0.38 eAED:0.38 QI:139|1|1|1|0.83|0.85|7|0|288; (*GB) gi|225462037|ref|XP_002274648.1| (e_value=1e-165) PREDICTED: KH domain-containing protein At5g56140 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9FKT4|QKIL2_ARATH (e_value=1e-145) KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1;; (*TAIR) AT5G56140.1 (e_value=1e-146) | Symbols: | RNA-binding KH domain-containing protein | chr5:22725462-22727932 FORWARD LENGTH=315;; (*ITAG) Solyc07g066070.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64821769-64828228 transcript_region:SL2.40ch07:64821769..64828228+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6TF49_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00012282g0007.1 protein AED:0.18 eAED:0.20 QI:0|0.5|0.4|1|0|0|5|215|344 NbS00012282g0006.1 protein AED:0.44 eAED:0.78 QI:0|0|0|0.66|1|1|3|0|150; (*ITAG) Solyc01g102610.2.1 (e_value=5e-21) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00017392g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|269315902|gb|ACZ37077.1| (e_value=5e-40) CRT/DRE binding factor [Citrus sinensis];; (*SWP) sp|Q9SGJ6|DRE1E_ARATH (e_value=4e-28) Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1;; (*TAIR) AT1G63030.2 (e_value=3e-29) | Symbols: ddf2 | Integrase-type DNA-binding superfamily protein | chr1:23367603-23368148 REVERSE LENGTH=181;; (*ITAG) Solyc12g056430.1.1 (e_value=4e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47712910-47713521 transcript_region:SL2.40ch12:47712910..47713521+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 10 (AHRD V1 *-*- ERF77_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00017392g0008.1 protein AED:0.30 eAED:0.30 QI:0|1|0.33|1|0.5|0.66|3|0|328; (*GB) gi|225426781|ref|XP_002282844.1| (e_value=1e-137) PREDICTED: F-box protein PP2-A12 [Vitis vinifera];; (*SWP) sp|Q9LN77|P2A12_ARATH (e_value=4e-121) F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1;; (*TAIR) AT1G12710.1 (e_value=3e-122) | Symbols: AtPP2-A12, PP2-A12 | phloem protein 2-A12 | chr1:4326980-4328324 REVERSE LENGTH=291;; (*ITAG) Solyc08g080360.2.1 (e_value=4e-172) genomic_reference:SL2.40ch08 gene_region:60829883-60832252 transcript_region:SL2.40ch08:60829883..60832252- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00026121g0005.1 protein AED:0.03 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|642; (*GB) gi|255565550|ref|XP_002523765.1| (e_value=0.0) clathrin assembly protein, putative [Ricinus communis];; (*SWP) sp|Q9SA65|CAP4_ARATH (e_value=0.0) Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1;; (*TAIR) AT1G03050.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr1:707726-709860 FORWARD LENGTH=599;; (*ITAG) Solyc01g104870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84950354-84952688 transcript_region:SL2.40ch01:84950354..84952688+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein (AHRD V1 *-** Q7ZVU6_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00009684g0001.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|1|1|2|0|140; (*GB) gi|359806777|ref|NP_001241303.1| (e_value=7e-78) uncharacterized protein LOC100786369 [Glycine max];; (*SWP) sp|Q9LJ98|PFD2_ARATH (e_value=6e-58) Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1;; (*TAIR) AT3G22480.1 (e_value=5e-59) | Symbols: PDF2 | prefoldin 2 | chr3:7969080-7969526 FORWARD LENGTH=148;; (*ITAG) Solyc06g053460.1.1 (e_value=1e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32755120-32755491 transcript_region:SL2.40ch06:32755120..32755491+ go_terms:GO:0015631 functional_description:"Prefoldin subunit 2 (AHRD V1 ***- B6TMM5_MAIZE); contains Interpro domain(s) IPR002777 Prefoldin beta-like "; GO:0015631 NbS00009684g0010.1 protein AED:0.21 eAED:0.21 QI:236|1|1|1|1|1|5|375|152; (*GB) gi|225432138|ref|XP_002274678.1| (e_value=3e-60) PREDICTED: uncharacterized protein LOC100244351 [Vitis vinifera];; (*TAIR) AT1G48170.1 (e_value=7e-63) | Symbols: | unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17788810-17789635 FORWARD LENGTH=153;; (*ITAG) Solyc06g053470.2.1 (e_value=1e-79) genomic_reference:SL2.40ch06 gene_region:32755953-32758748 transcript_region:SL2.40ch06:32755953..32758748- functional_description:"Os12g0182800 protein (Fragment) (AHRD V1 *-*- Q0IPM3_ORYSJ)"; NbS00023162g0005.1 protein AED:0.22 eAED:0.27 QI:0|0.55|0.4|1|0.77|0.7|10|0|661; (*GB) gi|15824567|gb|AAL09398.1|AF307095_1 (e_value=0.0) non-cell-autonomous protein pathway2 [Nicotiana tabacum];; (*SWP) sp|Q9GKX6|GALM_PIG (e_value=6e-62) Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1;; (*TAIR) AT5G15140.1 (e_value=2e-105) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:4908686-4910670 FORWARD LENGTH=490;; (*ITAG) Solyc02g087790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44659219-44660771 transcript_region:SL2.40ch02:44659219..44660771+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00044429g0003.1 protein AED:0.31 eAED:0.32 QI:0|1|0|1|1|1|2|0|61 NbS00041263g0001.1 protein AED:0.12 eAED:0.12 QI:0|1|0|1|0|0|2|0|96; (*ITAG) Solyc01g111490.1.1 (e_value=7e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89464763-89465182 transcript_region:SL2.40ch01:89464763..89465182- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00046941g0007.1 protein AED:0.31 eAED:0.32 QI:0|1|0.5|1|1|0.75|4|0|487; (*GB) gi|359492558|ref|XP_003634432.1| (e_value=4e-104) PREDICTED: putative pumilio homolog 7, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LVC3|PUM12_ARATH (e_value=1e-59) Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2;; (*TAIR) AT5G56510.1 (e_value=9e-61) | Symbols: APUM12, PUM12 | pumilio 12 | chr5:22881721-22883842 FORWARD LENGTH=596;; (*ITAG) Solyc04g078210.1.1 (e_value=6e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60602404-60607376 transcript_region:SL2.40ch04:60602404..60607376- go_terms:GO:0003723,GO:0005488 functional_description:"Pumilio (AHRD V1 *-*- Q16M53_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003723,GO:0005488 NbS00039175g0012.1 protein AED:0.06 eAED:0.06 QI:151|1|1|1|1|1|9|295|448; (*GB) gi|255552279|ref|XP_002517184.1| (e_value=0.0) ubiquitin-activating enzyme E1c, putative [Ricinus communis];; (*SWP) sp|O65041|UBA3_ARATH (e_value=0.0) NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2;; (*TAIR) AT5G19180.1 (e_value=0.0) | Symbols: ECR1 | E1 C-terminal related 1 | chr5:6453375-6455750 FORWARD LENGTH=454;; (*ITAG) Solyc01g079840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71475303-71486951 transcript_region:SL2.40ch01:71475303..71486951- go_terms:GO:0019781 functional_description:"NEDD8-activating enzyme E1 catalytic subunit (AHRD V1 **** B6TJH0_MAIZE); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0019781 NbS00039175g0014.1 protein AED:0.23 eAED:0.23 QI:105|1|1|1|0|0|2|353|165; (*GB) gi|356546422|ref|XP_003541625.1| (e_value=1e-73) PREDICTED: uncharacterized protein LOC100806510 [Glycine max];; (*TAIR) AT3G06080.2 (e_value=1e-69) | Symbols: | Plant protein of unknown function (DUF828) | chr3:1834959-1837524 REVERSE LENGTH=469;; (*ITAG) Solyc01g079850.2.1 (e_value=5e-111) genomic_reference:SL2.40ch01 gene_region:71488405-71491992 transcript_region:SL2.40ch01:71488405..71491992- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00004081g0106.1 protein AED:0.15 eAED:0.16 QI:0|1|0.75|1|1|1|4|0|260 NbS00004081g0101.1 protein AED:0.20 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|72 NbS00027123g0010.1 protein AED:0.31 eAED:0.31 QI:10|0|0|0.66|0.2|0.5|6|0|352; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-53) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042680.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43465188-43468241 transcript_region:SL2.40ch12:43465188..43468241- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00027123g0003.1 protein AED:0.43 eAED:0.59 QI:0|0|0.2|0.8|1|1|5|0|206; (*GB) gi|359478860|ref|XP_002276130.2| (e_value=4e-124) PREDICTED: 26S protease regulatory subunit 6B homolog [Vitis vinifera];; (*SWP) sp|Q9SEI4|PRS6B_ARATH (e_value=1e-124) 26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1;; (*TAIR) AT5G58290.1 (e_value=8e-126) | Symbols: RPT3 | regulatory particle triple-A ATPase 3 | chr5:23569155-23571116 FORWARD LENGTH=408;; (*ITAG) Solyc06g082630.2.1 (e_value=5e-126) genomic_reference:SL2.40ch06 gene_region:44672378-44677754 transcript_region:SL2.40ch06:44672378..44677754- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 6B (AHRD V1 ***- B6TRH7_MAIZE); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00011736g0009.1 protein AED:0.07 eAED:0.07 QI:51|1|1|1|0.66|0.75|4|401|226; (*GB) gi|225457618|ref|XP_002274236.1| (e_value=1e-106) PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera];; (*SWP) sp|Q9GMB0|RPN1_PIG (e_value=8e-16) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1;; (*TAIR) AT1G76400.1 (e_value=1e-103) | Symbols: | Ribophorin I | chr1:28658713-28661672 REVERSE LENGTH=614;; (*ITAG) Solyc04g082670.2.1 (e_value=7e-136) genomic_reference:SL2.40ch04 gene_region:63864900-63870443 transcript_region:SL2.40ch04:63864900..63870443+ go_terms:GO:0042802,GO:0004579 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (AHRD V1 **** C0HAM9_SALSA); contains Interpro domain(s) IPR007676 Ribophorin I "; GO:0042802,GO:0004579 NbS00011736g0004.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|197; (*GB) gi|298257683|gb|ADI71977.1| (e_value=3e-59) E3 ubiquitin ligase [Capsicum annuum];; (*SWP) sp|Q8LC69|ATL8_ARATH (e_value=2e-38) RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2;; (*TAIR) AT1G76410.1 (e_value=1e-39) | Symbols: ATL8 | RING/U-box superfamily protein | chr1:28668915-28669472 FORWARD LENGTH=185;; (*ITAG) Solyc04g082690.1.1 (e_value=7e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63880141-63880692 transcript_region:SL2.40ch04:63880141..63880692+ go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 *-*- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011736g0010.1 protein AED:0.24 eAED:0.27 QI:214|0.75|0.6|1|0.75|0.6|5|344|182; (*GB) gi|225457620|ref|XP_002274272.1| (e_value=4e-68) PREDICTED: uncharacterized protein LOC100244433 [Vitis vinifera];; (*SWP) sp|Q9FPG2|OP21B_ARATH (e_value=4e-67) Outer envelope pore protein 21B, chloroplastic OS=Arabidopsis thaliana GN=OEP21B PE=1 SV=1;; (*TAIR) AT1G76405.2 (e_value=3e-68) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20816.1); Has 52 Blast hits to 52 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28661994-28663673 FORWARD LENGTH=167;; (*ITAG) Solyc04g082680.2.1 (e_value=5e-101) genomic_reference:SL2.40ch04 gene_region:63870914-63876134 transcript_region:SL2.40ch04:63870914..63876134+ functional_description:"Chloroplast channel forming outer membrane protein (AHRD V1 ***- Q9SM57_PEA)"; NbS00013741g0009.1 protein AED:0.49 eAED:0.49 QI:293|0|0.5|0.5|1|1|2|0|71 NbS00013741g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|299 NbS00013741g0103.1 protein AED:0.00 eAED:0.00 QI:159|0|0.5|1|0|0.5|2|314|118 NbS00013741g0120.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|0|0.33|3|0|528 NbS00013741g0108.1 protein AED:0.29 eAED:0.39 QI:0|0|0|1|1|1|3|0|109 NbS00013741g0119.1 protein AED:0.93 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|61 NbS00013741g0121.1 protein AED:0.15 eAED:0.15 QI:390|0.88|0.7|1|0.77|0.9|10|0|340 NbS00021528g0001.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.33|1|1|3|0|81; (*GB) gi|351726034|ref|NP_001236345.1| (e_value=2e-35) uncharacterized protein LOC100306274 [Glycine max];; (*TAIR) AT5G40080.1 (e_value=8e-33) | Symbols: | Mitochondrial ribosomal protein L27 | chr5:16040190-16041529 REVERSE LENGTH=94;; (*ITAG) Solyc04g074690.2.1 (e_value=2e-39) genomic_reference:SL2.40ch04 gene_region:58196147-58203239 transcript_region:SL2.40ch04:58196147..58203239- functional_description:"39S ribosomal protein L41 mitochondrial (AHRD V1 ***- B5XGR0_SALSA); contains Interpro domain(s) IPR019189 Ribosomal protein L27/L41, mitochondrial "; NbS00059906g0004.1 protein AED:0.55 eAED:0.56 QI:31|0.5|0|0.66|1|0.66|3|0|143; (*GB) gi|296083832|emb|CBI24220.3| (e_value=4e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G57090.1 (e_value=3e-41) | Symbols: BIGYIN, FIS1A | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170;; (*ITAG) Solyc12g099770.1.1 (e_value=2e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65121351-65124319 transcript_region:SL2.40ch12:65121351..65124319+ go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00003984g0009.1 protein AED:0.01 eAED:0.01 QI:216|1|1|1|1|1|2|222|660; (*GB) gi|255586285|ref|XP_002533794.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G66200.1 (e_value=0.0) | Symbols: ARO2 | armadillo repeat only 2 | chr5:26453648-26455603 REVERSE LENGTH=651;; (*ITAG) Solyc03g033510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9327054-9329516 transcript_region:SL2.40ch03:9327054..9329516- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016136g0003.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|3|0|533; (*GB) gi|392465167|dbj|BAM24707.1| (e_value=0.0) Heat shock protein 70 [Nicotiana tabacum];; (*SWP) sp|P27322|HSP72_SOLLC (e_value=0.0) Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1;; (*TAIR) AT5G02500.1 (e_value=0.0) | Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 | heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651;; (*ITAG) Solyc09g010630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3965253-3968837 transcript_region:SL2.40ch09:3965253..3968837+ go_terms:GO:0051082 functional_description:"heat shock protein (AHRD V1 ***- B2D2G5_CAPSN); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0051082 NbS00016136g0111.1 protein AED:0.06 eAED:0.06 QI:199|1|1|1|1|1|3|460|391 NbS00016136g0110.1 protein AED:0.17 eAED:0.17 QI:0|0.75|0.4|1|0.5|0.8|5|0|543 NbS00016136g0107.1 protein AED:0.07 eAED:0.07 QI:266|0|0.5|1|1|1|2|0|568 NbS00001198g0006.1 protein AED:0.31 eAED:0.39 QI:0|0.76|0.57|0.92|0.61|0.64|14|0|447; (*GB) gi|357516711|ref|XP_003628644.1| (e_value=5e-150) hypothetical protein MTR_8g062990 [Medicago truncatula];; (*SWP) sp|Q94BZ1|ZIFL1_ARATH (e_value=1e-134) Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1;; (*TAIR) AT5G13750.1 (e_value=9e-136) | Symbols: ZIFL1 | zinc induced facilitator-like 1 | chr5:4438318-4441289 FORWARD LENGTH=478;; (*ITAG) Solyc01g096740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79513037-79519402 transcript_region:SL2.40ch01:79513037..79519402- go_terms:GO:0005351 functional_description:"Transporter major facilitator family (AHRD V1 **-- C4M254_ENTHI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00014209g0004.1 protein AED:0.10 eAED:0.10 QI:363|1|1|1|0.92|0.85|14|255|606; (*GB) gi|225446509|ref|XP_002278663.1| (e_value=0.0) PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal [Vitis vinifera];; (*SWP) sp|P0CZ23|ACOX3_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 3, peroxisomal OS=Arabidopsis thaliana GN=ACX3 PE=1 SV=1;; (*TAIR) AT1G06290.1 (e_value=0.0) | Symbols: ACX3, ATACX3 | acyl-CoA oxidase 3 | chr1:1922423-1926002 FORWARD LENGTH=675;; (*ITAG) Solyc10g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2239308-2246326 transcript_region:SL2.40ch10:2239308..2246326+ go_terms:GO:0016402 functional_description:"Acyl-CoA oxidase 6 (AHRD V1 **** D7KG21_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016402 NbS00023438g0002.1 protein AED:0.10 eAED:0.21 QI:0|0.33|0.25|0.75|1|1|4|0|318; (*GB) gi|297738575|emb|CBI27820.3| (e_value=5e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13960.1 (e_value=2e-53) | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 | chr3:4608526-4610160 FORWARD LENGTH=397;; (*ITAG) Solyc07g041640.2.1 (e_value=1e-65) genomic_reference:SL2.40ch07 gene_region:51144656-51146005 transcript_region:SL2.40ch07:51144656..51146005- go_terms:GO:0005634 functional_description:"Growth-regulating factor 1 (AHRD V1 *--- Q6AWY8_ORYSJ); contains Interpro domain(s) IPR014977 WRC "; GO:0005634 NbS00023438g0008.1 protein AED:0.20 eAED:0.24 QI:0|0|0|1|0|0|2|0|305; (*GB) gi|62241073|dbj|BAD93693.1| (e_value=2e-175) acyltransferase-like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=6e-19) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*TAIR) AT4G15390.1 (e_value=6e-20) | Symbols: | HXXXD-type acyl-transferase family protein | chr4:8792941-8794281 REVERSE LENGTH=446;; (*ITAG) Solyc05g039950.1.1 (e_value=1e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:47480105-47482311 transcript_region:SL2.40ch05:47480105..47482311- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00038168g0012.1 protein AED:0.11 eAED:0.11 QI:696|0.84|0.78|0.85|0.76|0.71|14|0|1157; (*GB) gi|225445228|ref|XP_002280942.1| (e_value=0.0) PREDICTED: membrane-bound transcription factor site-1 protease [Vitis vinifera];; (*SWP) sp|Q9WTZ2|MBTP1_MOUSE (e_value=0.0) Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=0.0) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00038168g0011.1 protein AED:0.14 eAED:0.14 QI:288|0.41|0.38|1|0.66|0.84|13|0|855; (*GB) gi|356570730|ref|XP_003553538.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720-like [Glycine max];; (*SWP) sp|C0LGI2|Y1677_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1;; (*TAIR) AT2G37050.3 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:15569290-15573477 FORWARD LENGTH=934;; (*ITAG) Solyc09g007280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:872417-881832 transcript_region:SL2.40ch09:872417..881832+ go_terms:GO:0001653,GO:0004675 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0001653,GO:0004675 NbS00038168g0002.1 protein AED:0.16 eAED:0.16 QI:0|0.4|0.16|0.5|0.8|0.66|6|0|220; (*GB) gi|356505184|ref|XP_003521372.1| (e_value=9e-92) PREDICTED: nuclear transcription factor Y subunit B-8-like [Glycine max];; (*SWP) sp|Q8VYK4|NFYB8_ARATH (e_value=4e-80) Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1;; (*TAIR) AT2G37060.3 (e_value=3e-81) | Symbols: NF-YB8 | nuclear factor Y, subunit B8 | chr2:15576336-15577660 FORWARD LENGTH=173;; (*ITAG) Solyc09g007290.2.1 (e_value=3e-76) genomic_reference:SL2.40ch09 gene_region:886803-890202 transcript_region:SL2.40ch09:886803..890202+ go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6UBN3_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00051405g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|3|0|203; (*GB) gi|297738679|emb|CBI27924.3| (e_value=4e-46) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29650.1 (e_value=5e-29) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr4:14528587-14529342 FORWARD LENGTH=251;; (*ITAG) Solyc07g021750.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:21306323-21307303 transcript_region:SL2.40ch07:21306323..21307303- go_terms:GO:0046087,GO:0016787,GO:0008270,GO:0003824 functional_description:"Cytidine deaminase (AHRD V1 ***- Q9XEX5_ARATH); contains Interpro domain(s) IPR006263 Cytidine deaminase, homodimeric "; GO:0046087,GO:0016787,GO:0008270,GO:0003824 NbS00005586g0002.1 protein AED:0.00 eAED:0.00 QI:117|0|0.5|1|0|1|2|872|321; (*GB) gi|225456567|ref|XP_002265348.1| (e_value=1e-136) PREDICTED: cytochrome P450 78A4 isoform 2 [Vitis vinifera];; (*SWP) sp|O65012|C78A4_PINRA (e_value=3e-77) Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1;; (*TAIR) AT1G13710.1 (e_value=2e-127) | Symbols: CYP78A5, KLU | cytochrome P450, family 78, subfamily A, polypeptide 5 | chr1:4702932-4704592 REVERSE LENGTH=517;; (*ITAG) Solyc03g114940.2.1 (e_value=2e-180) genomic_reference:SL2.40ch03 gene_region:58849423-58851764 transcript_region:SL2.40ch03:58849423..58851764- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00045155g0002.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|118 NbS00010732g0006.1 protein AED:0.01 eAED:0.19 QI:79|1|0.66|1|0|0|3|0|122; (*GB) gi|356514733|ref|XP_003526058.1| (e_value=8e-12) PREDICTED: uncharacterized protein LOC100787776 [Glycine max];; (*ITAG) Solyc08g061800.2.1 (e_value=2e-54) genomic_reference:SL2.40ch08 gene_region:46740890-46745658 transcript_region:SL2.40ch08:46740890..46745658+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023073g0002.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|0.5|2|0|84; (*GB) gi|431908|emb|CAA53782.1| (e_value=3e-34) transcription factor [Nicotiana tabacum];; (*SWP) sp|Q38838|AGL14_ARATH (e_value=2e-34) Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2;; (*TAIR) AT4G11880.1 (e_value=1e-35) | Symbols: AGL14 | AGAMOUS-like 14 | chr4:7143512-7147108 FORWARD LENGTH=221;; (*ITAG) Solyc10g017640.1.1 (e_value=5e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5505761-5505946 transcript_region:SL2.40ch10:5505761..5505946- go_terms:GO:0005634 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00022272g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|384; (*GB) gi|225460662|ref|XP_002267096.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257198 isoform 1 [Vitis vinifera];; (*TAIR) AT1G18740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF793) | chr1:6464125-6465273 FORWARD LENGTH=382;; (*ITAG) Solyc04g071480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56062289-56063455 transcript_region:SL2.40ch04:56062289..56063455+ functional_description:"Exocyst subunit Exo70-interacting protein Roh1 (Fragment) (AHRD V1 *-*- C1IJU1_TOBAC); contains Interpro domain(s) IPR008511 Protein of unknown function DUF793 "; NbS00043095g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|163; (*GB) gi|332308980|gb|AEE39461.1| (e_value=5e-41) SLF-interacting SKP1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=5e-30) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=4e-31) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=5e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00042283g0001.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|338; (*GB) gi|224100751|ref|XP_002311998.1| (e_value=1e-117) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39120.1 (e_value=4e-108) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr2:16321794-16322957 FORWARD LENGTH=387;; (*ITAG) Solyc10g079160.1.1 (e_value=6e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60090902-60092131 transcript_region:SL2.40ch10:60090902..60092131+ go_terms:GO:0005622 functional_description:"Os01g0617600 protein (Fragment) (AHRD V1 ***- Q0JL81_ORYSJ); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00042283g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|2|234|889; (*GB) gi|225441817|ref|XP_002278051.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Vitis vinifera];; (*SWP) sp|O22938|Y2182_ARATH (e_value=0.0) Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1;; (*TAIR) AT2G41820.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:17447170-17449914 FORWARD LENGTH=890;; (*ITAG) Solyc10g079170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60094152-60097061 transcript_region:SL2.40ch10:60094152..60097061- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002865g0003.1 protein AED:0.10 eAED:0.10 QI:1242|1|0.5|1|0|0|2|0|519; (*GB) gi|302142868|emb|CBI20163.3| (e_value=5e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64973|RPS5_ARATH (e_value=2e-74) Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2;; (*TAIR) AT1G12220.2 (e_value=1e-75) | Symbols: RPS5 | Disease resistance protein (CC-NBS-LRR class) family | chr1:4145011-4147680 FORWARD LENGTH=889;; (*ITAG) Solyc02g037540.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:21788403-21791477 transcript_region:SL2.40ch02:21788403..21791477+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00002865g0008.1 protein AED:0.26 eAED:0.26 QI:145|0.91|0.84|1|1|1|13|0|308; (*GB) gi|192910838|gb|ACF06527.1| (e_value=3e-143) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|Q8H5X5|SCAM1_ORYSJ (e_value=3e-137) Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=2e-128) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc12g010750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3670660-3675334 transcript_region:SL2.40ch12:3670660..3675334+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00002865g0004.1 protein AED:0.71 eAED:0.96 QI:0|-1|0|1|-1|1|1|0|505; (*GB) gi|225461744|ref|XP_002283414.1| (e_value=5e-52) PREDICTED: probable disease resistance protein At4g27220-like [Vitis vinifera];; (*SWP) sp|Q9T048|DRL27_ARATH (e_value=3e-26) Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1;; (*TAIR) AT4G27190.1 (e_value=2e-27) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13620977-13623934 REVERSE LENGTH=985;; (*ITAG) Solyc11g007790.1.1 (e_value=1e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2028383-2031076 transcript_region:SL2.40ch11:2028383..2031076+ go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00002865g0010.1 protein AED:0.98 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|61 NbS00002865g0009.1 protein AED:0.37 eAED:0.69 QI:0|0|0|0.83|0|0|6|0|230; (*ITAG) Solyc07g054430.2.1 (e_value=6e-26) genomic_reference:SL2.40ch07 gene_region:60069440-60072054 transcript_region:SL2.40ch07:60069440..60072054+ go_terms:GO:0030412,GO:0030409 functional_description:"Glutamate formiminotransferase (AHRD V1 **** B6UFR4_MAIZE); contains Interpro domain(s) IPR012886 Formiminotransferase, N-terminal "; GO:0030412,GO:0030409 NbS00002865g0007.1 protein AED:0.26 eAED:0.26 QI:23|-1|0|1|-1|0|1|0|59; (*GB) gi|224065751|ref|XP_002301953.1| (e_value=6e-23) cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=2e-20) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT4G39330.1 (e_value=6e-20) | Symbols: ATCAD9, CAD9 | cinnamyl alcohol dehydrogenase 9 | chr4:18291268-18292772 FORWARD LENGTH=360;; (*ITAG) Solyc02g030480.2.1 (e_value=1e-31) genomic_reference:SL2.40ch02 gene_region:16916157-16920165 transcript_region:SL2.40ch02:16916157..16920165+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** A9PHZ1_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00040978g0003.1 protein AED:0.59 eAED:0.59 QI:0|0.5|0|0.66|1|1|3|0|145; (*ITAG) Solyc03g005110.2.1 (e_value=2e-26) genomic_reference:SL2.40ch03 gene_region:75630-77619 transcript_region:SL2.40ch03:75630..77619+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042637g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.66|1|1|3|0|138; (*GB) gi|22128587|gb|AAM52339.1| (e_value=3e-44) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q9LPX2|PPR39_ARATH (e_value=5e-26) Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1;; (*TAIR) AT1G12775.1 (e_value=4e-27) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4353906-4355840 FORWARD LENGTH=644;; (*ITAG) Solyc06g007280.2.1 (e_value=7e-49) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00017223g0013.1 protein AED:0.17 eAED:0.19 QI:0|0.85|0.62|1|0.85|0.75|8|373|746; (*GB) gi|359491073|ref|XP_002276849.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243361 [Vitis vinifera];; (*SWP) sp|Q3YT89|NADA_EHRCJ (e_value=1e-18) Quinolinate synthase A OS=Ehrlichia canis (strain Jake) GN=nadA PE=3 SV=1;; (*TAIR) AT5G50210.1 (e_value=0.0) | Symbols: QS, OLD5, SUFE3 | quinolinate synthase | chr5:20442803-20445706 FORWARD LENGTH=718;; (*ITAG) Solyc03g112060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56648472-56655136 transcript_region:SL2.40ch03:56648472..56655136+ go_terms:GO:0051539,GO:0008047,GO:0042803 functional_description:"Quinolinate synthase A (AHRD V1 *-*- NADA_CYAP4); contains Interpro domain(s) IPR003808 Fe-S metabolism associated SufE "; GO:0051539,GO:0008047,GO:0042803 NbS00017223g0002.1 protein AED:0.35 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|354; (*GB) gi|356565248|ref|XP_003550854.1| (e_value=0.0) PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [Glycine max];; (*SWP) sp|Q8H5F8|ADPRM_ORYSJ (e_value=1e-167) Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Oryza sativa subsp. japonica GN=Os07g0688000 PE=2 SV=1;; (*TAIR) AT4G24730.3 (e_value=5e-160) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12752696-12753631 REVERSE LENGTH=311;; (*ITAG) Solyc03g112080.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56665004-56665963 transcript_region:SL2.40ch03:56665004..56665963+ go_terms:GO:0004722 functional_description:"Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase (AHRD V1 **-- ADPRM_BOVIN); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00017223g0012.1 protein AED:0.06 eAED:0.08 QI:70|0|0.5|1|1|1|2|0|183; (*GB) gi|20149062|gb|AAM12786.1| (e_value=5e-82) unknown [Capsicum annuum];; (*SWP) sp|Q9FGS5|NRT31_ARATH (e_value=3e-47) High-affinity nitrate transporter 3.1 OS=Arabidopsis thaliana GN=NRT3.1 PE=1 SV=1;; (*TAIR) AT5G50200.1 (e_value=2e-48) | Symbols: WR3, ATNRT3.1, NRT3.1 | nitrate transmembrane transporters | chr5:20436612-20437535 FORWARD LENGTH=210;; (*ITAG) Solyc03g112100.2.1 (e_value=4e-80) genomic_reference:SL2.40ch03 gene_region:56672702-56674150 transcript_region:SL2.40ch03:56672702..56674150- go_terms:GO:0015112 functional_description:"Component of high affinity nitrate transporter (AHRD V1 **-* D2KTV0_LOTJA); contains Interpro domain(s) IPR016605 Transporter, high affinity nitrate, Nar2 "; GO:0015112 NbS00017223g0014.1 protein AED:0.07 eAED:0.20 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|356563139|ref|XP_003549822.1| (e_value=4e-42) PREDICTED: high-affinity nitrate transporter 3.1-like [Glycine max];; (*SWP) sp|Q9SB67|NRT32_ARATH (e_value=9e-29) High-affinity nitrate transporter 3.2 OS=Arabidopsis thaliana GN=NRT3.2 PE=2 SV=1;; (*TAIR) AT4G24730.4 (e_value=1e-29) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr4:12749879-12750872 REVERSE LENGTH=231;; (*ITAG) Solyc03g112100.2.1 (e_value=1e-36) genomic_reference:SL2.40ch03 gene_region:56672702-56674150 transcript_region:SL2.40ch03:56672702..56674150- go_terms:GO:0015112 functional_description:"Component of high affinity nitrate transporter (AHRD V1 **-* D2KTV0_LOTJA); contains Interpro domain(s) IPR016605 Transporter, high affinity nitrate, Nar2 "; GO:0015112 NbS00019445g0001.1 protein AED:0.18 eAED:0.96 QI:63|0|0.5|1|0|0.5|2|0|407; (*GB) gi|147792827|emb|CAN62228.1| (e_value=9e-27) hypothetical protein VITISV_008028 [Vitis vinifera];; (*TAIR) AT5G65170.1 (e_value=7e-23) | Symbols: | VQ motif-containing protein | chr5:26041218-26042306 FORWARD LENGTH=362;; (*ITAG) Solyc04g055050.1.1 (e_value=1e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:52752735-52754765 transcript_region:SL2.40ch04:52752735..52754765+ functional_description:"VQ motif family protein expressed (AHRD V1 *-*- Q10KE8_ORYSJ); contains Interpro domain(s) IPR008889 VQ "; NbS00019445g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|122; (*GB) gi|11466011|ref|NP_054553.1| (e_value=5e-37) hypothetical protein NitaCp079 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=3e-38) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01130.1 (e_value=1e-35) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc10g062330.1.1 (e_value=5e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:56406039-56406944 transcript_region:SL2.40ch10:56406039..56406944- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 **-- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00017423g0008.1 protein AED:0.00 eAED:0.00 QI:127|1|1|1|1|1|2|264|437; (*GB) gi|224063407|ref|XP_002301131.1| (e_value=2e-131) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10020.1 (e_value=4e-119) | Symbols: | Protein of unknown function (DUF1005) | chr1:3269939-3271732 REVERSE LENGTH=461;; (*ITAG) Solyc01g106690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86223502-86225341 transcript_region:SL2.40ch01:86223502..86225341- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00017423g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|641|149; (*GB) gi|297831924|ref|XP_002883844.1| (e_value=2e-65) hypothetical protein ARALYDRAFT_319455 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G14660.1 (e_value=4e-65) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); Has 2761 Blast hits to 2761 proteins in 686 species: Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants - 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI BLink). | chr2:6272506-6272982 FORWARD LENGTH=158;; (*ITAG) Solyc10g048190.1.1 (e_value=6e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:39967120-39967536 transcript_region:SL2.40ch10:39967120..39967536+ functional_description:"Ubiquinol-Cytochrome c reductase iron-sulfur subunit (AHRD V1 **-- B6B5V9_9RHOB); contains Interpro domain(s) IPR002740 Uncharacterised protein family UPF0310 "; NbS00017423g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|225438450|ref|XP_002277064.1| (e_value=3e-175) PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|Q495N2|S36A3_HUMAN (e_value=5e-30) Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2;; (*TAIR) AT2G42005.1 (e_value=7e-168) | Symbols: | Transmembrane amino acid transporter family protein | chr2:17531323-17532564 REVERSE LENGTH=413;; (*ITAG) Solyc10g048180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:39912242-39913525 transcript_region:SL2.40ch10:39912242..39913525+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00014497g0001.1 protein AED:0.01 eAED:0.01 QI:354|0.75|0.6|1|0.75|0.6|5|382|748; (*GB) gi|3107905|dbj|BAA25906.1| (e_value=0.0) leaf protein [Ipomoea nil];; (*SWP) sp|Q8S9D1|PP395_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1;; (*TAIR) AT5G21222.1 (e_value=0.0) | Symbols: | protein kinase family protein | chr5:7209422-7213700 FORWARD LENGTH=831;; (*ITAG) Solyc07g032380.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:37904500-37908632 transcript_region:SL2.40ch07:37904500..37908632- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M4J8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014497g0014.1 protein AED:0.08 eAED:0.08 QI:262|1|1|1|0.25|0.4|5|223|308; (*GB) gi|225458826|ref|XP_002283315.1| (e_value=2e-80) PREDICTED: cyclin-D5-1 [Vitis vinifera];; (*SWP) sp|Q10QA2|CCD53_ORYSJ (e_value=5e-41) Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1;; (*TAIR) AT4G37630.2 (e_value=5e-35) | Symbols: CYCD5;1 | cyclin d5;1 | chr4:17679497-17680788 FORWARD LENGTH=321;; (*ITAG) Solyc04g077880.1.1 (e_value=8e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:60356429-60358833 transcript_region:SL2.40ch04:60356429..60358833- functional_description:"Cyclin D5 3B (AHRD V1 ***- Q1XAH2_MAIZE); contains Interpro domain(s) IPR015451 Cyclin D "; NbS00014497g0012.1 protein AED:0.13 eAED:0.13 QI:152|0.83|0.57|1|0.83|0.85|7|0|455; (*GB) gi|225445236|ref|XP_002280965.1| (e_value=0.0) PREDICTED: caseinolytic peptidase B protein homolog [Vitis vinifera];; (*SWP) sp|O22025|CFXQ_CYAME (e_value=3e-29) Protein cfxQ homolog OS=Cyanidioschyzon merolae GN=cfxQ PE=3 SV=2;; (*TAIR) AT3G24530.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein / ankyrin repeat family protein | chr3:8945678-8947786 REVERSE LENGTH=481;; (*ITAG) Solyc12g007100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:1537587-1541140 transcript_region:SL2.40ch12:1537587..1541140- go_terms:GO:0030506 functional_description:"Ankyrin repeat domain-containing protein 1 (AHRD V1 *--* ANKR1_CHICK); contains Interpro domain(s) IPR000641 CbxX/CfqX "; GO:0030506 NbS00017751g0013.1 protein AED:0.33 eAED:0.33 QI:0|1|0.9|1|1|1|10|0|325; (*GB) gi|76556494|emb|CAJ32462.1| (e_value=0.0) putative cytosolic cysteine synthase 7 [Nicotiana tabacum];; (*SWP) sp|O81154|CYSK_SOLTU (e_value=0.0) Cysteine synthase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G14880.4 (e_value=8e-171) | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322;; (*ITAG) Solyc09g082060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63298831-63303187 transcript_region:SL2.40ch09:63298831..63303187+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q3LAG5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00017751g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|224102067|ref|XP_002312532.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|O23342|SECE1_ARATH (e_value=5e-24) Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1;; (*TAIR) AT4G14870.1 (e_value=4e-25) | Symbols: SECE1 | secE/sec61-gamma protein transport protein | chr4:8517248-8517781 FORWARD LENGTH=177; NbS00032556g0004.1 protein AED:0.58 eAED:0.82 QI:69|0|0|0.75|0.33|0.5|4|237|29 NbS00000952g0006.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|1|0|2|0|187; (*GB) gi|53793731|gb|AAU93594.1| (e_value=6e-118) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=1e-113) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=9e-115) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=1e-120) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00001682g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=8e-18) NADH dehydrogenase subunit [Medicago truncatula];; (*ITAG) Solyc03g063500.1.1 (e_value=5e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:31977931-31978762 transcript_region:SL2.40ch03:31977931..31978762- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 *-*- A8TL14_9PROT); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00001682g0113.1 protein AED:0.08 eAED:0.08 QI:0|1|0.83|1|1|1|6|427|426 NbS00001682g0105.1 protein AED:0.25 eAED:0.37 QI:0|0|0|1|1|1|2|0|265 NbS00001682g0104.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|75 NbS00001682g0103.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|1|1|2|0|124 NbS00020776g0001.1 protein AED:0.19 eAED:0.23 QI:0|0.5|0.33|0.66|1|1|3|204|87; (*GB) gi|255569016|ref|XP_002525478.1| (e_value=3e-16) hypothetical protein RCOM_1122760 [Ricinus communis];; (*TAIR) AT5G18310.2 (e_value=7e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6061759-6062912 FORWARD LENGTH=167;; (*ITAG) Solyc04g050790.2.1 (e_value=5e-23) genomic_reference:SL2.40ch04 gene_region:47410176-47415716 transcript_region:SL2.40ch04:47410176..47415716- functional_description:"Unknown Protein (AHRD V1)"; NbS00000921g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.83|1|0.8|0.83|6|0|397; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=9e-163) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*TAIR) AT5G05680.1 (e_value=5e-137) | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810;; (*ITAG) Solyc11g008110.1.1 (e_value=4e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2307636-2318179 transcript_region:SL2.40ch11:2307636..2318179+ functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 **-- Q9FFK6_ARATH)"; NbS00031267g0003.1 protein AED:0.33 eAED:0.33 QI:333|0.5|0.4|0.6|0.5|0.6|5|0|67 NbC26261923g0003.1 protein AED:0.22 eAED:0.22 QI:164|1|1|1|0.5|0.66|3|407|74 NbS00007073g0009.1 protein AED:0.05 eAED:0.05 QI:402|1|1|1|0|0.16|6|426|383; (*GB) gi|296085551|emb|CBI29283.3| (e_value=3e-152) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WQK2|ZDHC9_ARATH (e_value=1e-117) Probable S-acyltransferase At3g26935 OS=Arabidopsis thaliana GN=At3g26935 PE=1 SV=1;; (*TAIR) AT3G26935.1 (e_value=1e-118) | Symbols: | DHHC-type zinc finger family protein | chr3:9933001-9935218 REVERSE LENGTH=443;; (*ITAG) Solyc11g045670.1.1 (e_value=5e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:40368253-40370680 transcript_region:SL2.40ch11:40368253..40370680+ go_terms:GO:0016409 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-** PFA4_NEUCR); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0016409 NbS00007073g0011.1 protein AED:0.06 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|313; (*GB) gi|224074165|ref|XP_002304282.1| (e_value=6e-27) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9M644|LEP_ARATH (e_value=3e-25) Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1;; (*TAIR) AT5G13910.1 (e_value=2e-26) | Symbols: LEP | Integrase-type DNA-binding superfamily protein | chr5:4482450-4483085 REVERSE LENGTH=211;; (*ITAG) Solyc11g045680.1.1 (e_value=1e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:40372028-40373244 transcript_region:SL2.40ch11:40372028..40373244- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6SU49_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00007073g0010.1 protein AED:0.28 eAED:0.36 QI:0|0|0|1|0|0|2|0|73 NbS00007682g0003.1 protein AED:0.32 eAED:0.32 QI:0|1|0|1|1|1|2|0|192; (*GB) gi|297734196|emb|CBI15443.3| (e_value=6e-54) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73885.1 (e_value=7e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27786864-27787708 FORWARD LENGTH=192;; (*ITAG) Solyc06g069170.2.1 (e_value=2e-95) genomic_reference:SL2.40ch06 gene_region:39334693-39336861 transcript_region:SL2.40ch06:39334693..39336861+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000170g0007.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|6|0|559; (*GB) gi|224090061|ref|XP_002308926.1| (e_value=9e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=1e-142) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT5G03490.1 (e_value=4e-57) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:871550-872947 FORWARD LENGTH=465;; (*ITAG) Solyc11g066670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49527008-49528411 transcript_region:SL2.40ch11:49527008..49528411+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 *-*- B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00000170g0010.1 protein AED:0.05 eAED:0.05 QI:141|1|1|1|0.75|0.6|5|179|352; (*GB) gi|255573002|ref|XP_002527431.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FFC6|GDL78_ARATH (e_value=7e-175) GDSL esterase/lipase At5g22810 OS=Arabidopsis thaliana GN=At5g22810 PE=2 SV=3;; (*TAIR) AT5G22810.1 (e_value=2e-176) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:7621568-7623367 FORWARD LENGTH=337;; (*ITAG) Solyc11g066700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49545264-49549128 transcript_region:SL2.40ch11:49545264..49549128- go_terms:GO:0005515,GO:0004091 functional_description:"GDSL esterase/lipase At5g22810 (AHRD V1 ***- GDL78_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0005515,GO:0004091 NbS00000170g0009.1 protein AED:0.17 eAED:0.17 QI:25|1|1|1|1|1|4|251|139; (*GB) gi|225436377|ref|XP_002271178.1| (e_value=2e-62) PREDICTED: recQ-mediated genome instability protein 2 [Vitis vinifera];; (*TAIR) AT1G08390.1 (e_value=3e-51) | Symbols: | unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2642220-2643103 FORWARD LENGTH=137;; (*ITAG) Solyc11g066690.1.1 (e_value=1e-74) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49539253-49543914 transcript_region:SL2.40ch11:49539253..49543914- go_terms:GO:0003676 functional_description:"OB-fold nucleic acid binding domain containing protein expressed (AHRD V1 ***- Q10F22_ORYSJ); contains Interpro domain(s) IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type "; GO:0003676 NbS00000170g0014.1 protein AED:0.22 eAED:0.22 QI:0|0.8|0.66|1|0.8|0.83|6|322|658; (*GB) gi|225436373|ref|XP_002271001.1| (e_value=0.0) PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Vitis vinifera];; (*SWP) sp|Q9FYC7|PDAT2_ARATH (e_value=0.0) Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1;; (*TAIR) AT3G44830.1 (e_value=0.0) | Symbols: | Lecithin:cholesterol acyltransferase family protein | chr3:16368890-16372356 FORWARD LENGTH=665;; (*ITAG) Solyc11g066710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49552357-49557089 transcript_region:SL2.40ch11:49552357..49557089- go_terms:GO:0006629 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 ***- B3LPN2_YEAS1); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00004629g0005.1 protein AED:0.31 eAED:0.59 QI:182|0|0.33|1|0|0|3|0|101; (*ITAG) Solyc02g062300.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:28463464-28465915 transcript_region:SL2.40ch02:28463464..28465915- go_terms:GO:0045735 functional_description:"BURP domain-containing protein (AHRD V1 **-- B2ZPK5_SOLTU); contains Interpro domain(s) IPR004873 BURP "; GO:0045735 NbS00004629g0006.1 protein AED:0.09 eAED:0.09 QI:101|1|0.91|1|0.81|0.75|12|2005|1151; (*GB) gi|255581424|ref|XP_002531520.1| (e_value=0.0) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=2e-32) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=3e-96) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc02g062290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:28453610-28458350 transcript_region:SL2.40ch02:28453610..28458350+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C1GL98_PARBD); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00007178g0003.1 protein AED:0.05 eAED:0.21 QI:0|0|0|0.5|0|0|2|0|327; (*GB) gi|193527442|gb|ACF19786.1| (e_value=1e-89) NAC transcription factor [Nicotiana tabacum];; (*TAIR) AT4G36160.1 (e_value=5e-13) | Symbols: ANAC076, VND2, NAC076 | NAC domain containing protein 76 | chr4:17110877-17112891 REVERSE LENGTH=377;; (*ITAG) Solyc07g053680.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59444350-59444996 transcript_region:SL2.40ch07:59444350..59444996- go_terms:GO:0045449 functional_description:"NAC domain-containing protein 67 (AHRD V1 ***- B6T3X1_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00016061g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|176; (*GB) gi|225446615|ref|XP_002280666.1| (e_value=4e-96) PREDICTED: uncharacterized protein LOC100266079 [Vitis vinifera];; (*TAIR) AT2G42610.2 (e_value=6e-86) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc10g008000.1.1 (e_value=9e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2170166-2170702 transcript_region:SL2.40ch10:2170166..2170702+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00016061g0009.1 protein AED:0.27 eAED:0.27 QI:84|0.85|0.87|1|0.85|0.75|8|371|268; (*GB) gi|224113215|ref|XP_002316425.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08400.2 (e_value=3e-96) | Symbols: | Protein of unknown function (DUF3531) | chr5:2707225-2708911 REVERSE LENGTH=300;; (*ITAG) Solyc08g081080.2.1 (e_value=4e-107) genomic_reference:SL2.40ch08 gene_region:61360803-61364423 transcript_region:SL2.40ch08:61360803..61364423- functional_description:"Oxidoreductase/ transition metal ion binding protein (AHRD V1 **-- D7MCM0_ARALY)"; NbS00050570g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|12657589|dbj|BAB21563.1| (e_value=6e-176) phosphate transporter [Nicotiana tabacum];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=2e-139) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=1e-140) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc03g005560.1.1 (e_value=7e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00050570g0003.1 protein AED:0.26 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|290; (*GB) gi|12657589|dbj|BAB21563.1| (e_value=7e-173) phosphate transporter [Nicotiana tabacum];; (*SWP) sp|Q8H074|PT112_ORYSJ (e_value=1e-138) Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1;; (*TAIR) AT2G32830.1 (e_value=5e-139) | Symbols: PHT5, PHT1;5 | phosphate transporter 1;5 | chr2:13927754-13929657 REVERSE LENGTH=542;; (*ITAG) Solyc03g005560.1.1 (e_value=6e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00046822g0005.1 protein AED:0.32 eAED:0.40 QI:0|0.71|0.73|1|0.71|0.73|15|0|575; (*GB) gi|297744550|emb|CBI37812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55GU0|Y9955_DICDI (e_value=3e-59) Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1;; (*TAIR) AT4G38470.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc01g111880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89803298-89811106 transcript_region:SL2.40ch01:89803298..89811106- go_terms:GO:0004713 functional_description:"Tyrosine-protein kinase transforming protein Src (AHRD V1 *-** SRC_AVIST); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004713 NbS00023151g0005.1 protein AED:0.63 eAED:0.63 QI:18|0.66|0|0.75|0.66|0.5|4|0|131; (*TAIR) AT2G45270.1 (e_value=6e-14) | Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480;; (*ITAG) Solyc05g050940.2.1 (e_value=3e-15) genomic_reference:SL2.40ch05 gene_region:60312326-60319564 transcript_region:SL2.40ch05:60312326..60319564+ go_terms:GO:0005515,GO:0004125 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0005515,GO:0004125 NbS00059606g0003.1 protein AED:0.15 eAED:0.15 QI:156|1|1|1|1|1|6|156|288; (*GB) gi|257831431|gb|ACV71016.1| (e_value=4e-120) UPA16 [Capsicum annuum];; (*SWP) sp|Q2R3P9|SWT14_ORYSJ (e_value=2e-88) Bidirectional sugar transporter SWEET14 OS=Oryza sativa subsp. japonica GN=SWEET14 PE=2 SV=1;; (*TAIR) AT3G48740.1 (e_value=4e-85) | Symbols: SWEET11, AtSWEET11 | Nodulin MtN3 family protein | chr3:18052814-18054663 REVERSE LENGTH=289;; (*ITAG) Solyc06g072620.2.1 (e_value=2e-130) genomic_reference:SL2.40ch06 gene_region:41175930-41177783 transcript_region:SL2.40ch06:41175930..41177783+ go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00042917g0003.1 protein AED:0.09 eAED:0.09 QI:374|1|1|1|0.33|0.75|4|180|202; (*GB) gi|225468763|ref|XP_002274881.1| (e_value=2e-119) PREDICTED: uncharacterized protein LOC100267774 [Vitis vinifera];; (*TAIR) AT3G50830.1 (e_value=8e-111) | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated 413-plasma membrane 2 | chr3:18894109-18895355 REVERSE LENGTH=203;; (*ITAG) Solyc02g065380.2.1 (e_value=2e-137) genomic_reference:SL2.40ch02 gene_region:31140836-31146667 transcript_region:SL2.40ch02:31140836..31146667- functional_description:"Cold acclimation protein COR413-like (AHRD V1 ***- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 "; NbC26215295g0003.1 protein AED:0.76 eAED:0.76 QI:0|0.5|0|0.66|1|0.66|3|0|163; (*GB) gi|225439137|ref|XP_002267006.1| (e_value=5e-74) PREDICTED: uncharacterized protein LOC100250127 [Vitis vinifera];; (*SWP) sp|Q9NQG5|RPR1B_HUMAN (e_value=3e-17) Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens GN=RPRD1B PE=1 SV=1;; (*TAIR) AT5G65180.1 (e_value=2e-47) | Symbols: | ENTH/VHS family protein | chr5:26045625-26047806 FORWARD LENGTH=439;; (*ITAG) Solyc11g012740.1.1 (e_value=1e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5494026-5508912 transcript_region:SL2.40ch11:5494026..5508912- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00054000g0003.1 protein AED:0.12 eAED:0.11 QI:202|0.71|0.62|0.87|0.57|0.75|8|0|523; (*GB) gi|225432402|ref|XP_002276882.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase ULK4-like [Vitis vinifera];; (*SWP) sp|Q5RAJ5|STK36_PONAB (e_value=1e-41) Serine/threonine-protein kinase 36 OS=Pongo abelii GN=STK36 PE=2 SV=1;; (*TAIR) AT5G18700.1 (e_value=1e-161) | Symbols: RUK, EMB3013 | Protein kinase family protein with ARM repeat domain | chr5:6235387-6240733 REVERSE LENGTH=1366;; (*ITAG) Solyc08g013940.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3322188-3331230 transcript_region:SL2.40ch08:3322188..3331230+ go_terms:GO:0008017,GO:0016301 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NGF5_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008017,GO:0016301 NbS00010263g0008.1 protein AED:0.28 eAED:0.28 QI:156|1|1|1|1|1|2|282|289; (*GB) gi|224134703|ref|XP_002327469.1| (e_value=4e-127) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02700.1 (e_value=3e-105) | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252;; (*ITAG) Solyc02g081580.2.1 (e_value=5e-155) genomic_reference:SL2.40ch02 gene_region:40052042-40054919 transcript_region:SL2.40ch02:40052042..40054919- functional_description:"NC domain-containing protein (AHRD V1 **-- D7KZK3_ARALY); contains Interpro domain(s) IPR007053 NC "; NbS00061194g0003.1 protein AED:0.33 eAED:0.42 QI:147|0.25|0.6|1|1|1|5|332|109; (*GB) gi|255539152|ref|XP_002510641.1| (e_value=2e-21) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LDK3|NDUB2_ARATH (e_value=5e-21) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1;; (*TAIR) AT1G76200.1 (e_value=4e-22) | Symbols: | unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr1:28593351-28593980 FORWARD LENGTH=69; NbS00014429g0016.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|4|0|589; (*GB) gi|359489080|ref|XP_002264194.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g03580-like [Vitis vinifera];; (*SWP) sp|Q9SS60|PP210_ARATH (e_value=6e-173) Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1;; (*TAIR) AT3G03580.1 (e_value=5e-174) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:860695-863343 REVERSE LENGTH=882;; (*ITAG) Solyc01g081290.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73033754-73041039 transcript_region:SL2.40ch01:73033754..73041039- go_terms:GO:0006468 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014429g0017.1 protein AED:0.28 eAED:0.28 QI:0|1|0.33|1|1|1|3|0|142; (*GB) gi|224116904|ref|XP_002317423.1| (e_value=3e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M352|RL362_ARATH (e_value=4e-54) 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1;; (*TAIR) AT3G53740.4 (e_value=3e-55) | Symbols: | Ribosomal protein L36e family protein | chr3:19913921-19914813 REVERSE LENGTH=112;; (*ITAG) Solyc06g036050.2.1 (e_value=2e-72) genomic_reference:SL2.40ch06 gene_region:22119291-22121149 transcript_region:SL2.40ch06:22119291..22121149- go_terms:GO:0005840 functional_description:"60S ribosomal protein L36 (AHRD V1 ***- B9I1L9_POPTR); contains Interpro domain(s) IPR000509 Ribosomal protein L36e "; GO:0005840 NbS00014429g0023.1 protein AED:0.09 eAED:0.09 QI:0|0.9|0.81|0.90|0.8|0.72|11|686|229; (*GB) gi|37983622|gb|AAR06292.1| (e_value=6e-161) SAICAR synthetase [Nicotiana tabacum];; (*SWP) sp|P38025|PUR7_ARATH (e_value=2e-130) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2;; (*TAIR) AT3G21110.2 (e_value=2e-131) | Symbols: PUR7, PURC | purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411;; (*ITAG) Solyc01g081300.2.1 (e_value=9e-157) genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase "; GO:0004639 NbS00014429g0008.1 protein AED:0.13 eAED:0.13 QI:824|0.5|0.33|0.66|1|1|3|0|139; (*GB) gi|37983622|gb|AAR06292.1| (e_value=2e-81) SAICAR synthetase [Nicotiana tabacum];; (*SWP) sp|P38025|PUR7_ARATH (e_value=1e-33) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic OS=Arabidopsis thaliana GN=PUR7 PE=2 SV=2;; (*TAIR) AT3G21110.2 (e_value=1e-34) | Symbols: PUR7, PURC | purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411;; (*ITAG) Solyc01g081300.2.1 (e_value=3e-69) genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase "; GO:0004639 NbS00014429g0022.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0.5|0.66|3|115|169; (*GB) gi|350538459|ref|NP_001234088.1| (e_value=1e-78) uncharacterized protein LOC543815 [Solanum lycopersicum];; (*SWP) sp|Q9FQA3|GST23_MAIZE (e_value=3e-45) Glutathione transferase GST 23 OS=Zea mays PE=2 SV=1;; (*TAIR) AT2G29490.1 (e_value=1e-44) | Symbols: ATGSTU1, GST19, GSTU1 | glutathione S-transferase TAU 1 | chr2:12631593-12632360 REVERSE LENGTH=224;; (*ITAG) Solyc01g081310.2.1 (e_value=3e-81) genomic_reference:SL2.40ch01 gene_region:73052539-73054069 transcript_region:SL2.40ch01:73052539..73054069+ functional_description:"Glutathione-S-transferase (AHRD V1 ***- B2BY02_9BRAS); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00014429g0006.1 protein AED:0.21 eAED:0.23 QI:0|0|0|1|1|1|2|0|322; (*GB) gi|255578055|ref|XP_002529898.1| (e_value=4e-54) small nuclear ribonucleoprotein-associated protein, putative [Ricinus communis];; (*SWP) sp|Q9N1Q0|RSMB_MACEU (e_value=1e-35) Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1;; (*TAIR) AT5G44500.2 (e_value=4e-56) | Symbols: | Small nuclear ribonucleoprotein family protein | chr5:17927505-17928269 FORWARD LENGTH=254;; (*ITAG) Solyc01g094540.2.1 (e_value=6e-67) genomic_reference:SL2.40ch01 gene_region:77730818-77733865 transcript_region:SL2.40ch01:77730818..77733865- functional_description:"Small nuclear ribonucleoprotein-associated protein B (AHRD V1 *-*- B6T3Z9_MAIZE); contains Interpro domain(s) IPR017131 Small ribonucleoprotein associated, SmB/SmN "; NbS00021424g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|147792209|emb|CAN72978.1| (e_value=2e-59) hypothetical protein VITISV_009029 [Vitis vinifera];; (*SWP) sp|P26861|RM06_MARPO (e_value=1e-47) 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2;; (*TAIR) AT2G18400.1 (e_value=2e-56) | Symbols: | ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102;; (*ITAG) Solyc02g085280.1.1 (e_value=3e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42805687-42805995 transcript_region:SL2.40ch02:42805687..42805995- go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- A6NXE5_9BACE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00059800g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|248; (*GB) gi|75224035|sp|Q6TPK4.1|CYT1_ACTDE (e_value=2e-30) RecName: Full=Cysteine proteinase inhibitor 1; Short=KCPI1; AltName: Full=Phytocystatin; AltName: Allergen=Act d 4; Flags: Precursor;; (*SWP) sp|Q6TPK4|CYT1_ACTDE (e_value=6e-32) Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT5G47550.1 (e_value=3e-30) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc04g014790.1.1 (e_value=2e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5030604-5031014 transcript_region:SL2.40ch04:5030604..5031014+ go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q30KW6_ZEAMP); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869 NbS00004705g0001.1 protein AED:0.17 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|85 NbS00008103g0014.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|1|1|2|0|687; (*GB) gi|255552648|ref|XP_002517367.1| (e_value=2e-168) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|O48788|Y2267_ARATH (e_value=2e-50) Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1;; (*TAIR) AT2G26730.1 (e_value=2e-51) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:11388621-11391286 FORWARD LENGTH=658;; (*ITAG) Solyc11g071880.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52298447-52301148 transcript_region:SL2.40ch11:52298447..52301148+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00008103g0004.1 protein AED:0.40 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|520; (*TAIR) AT1G68550.2 (e_value=2e-13) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc08g081650.1.1 (e_value=1e-108) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:61803221-61805947 transcript_region:SL2.40ch08:61803221..61805947- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00008103g0015.1 protein AED:0.29 eAED:0.29 QI:267|1|0.90|1|0.8|0.81|11|0|360; (*GB) gi|225462436|ref|XP_002264436.1| (e_value=0.0) PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9C5J8|OEP80_ARATH (e_value=1e-69) Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1;; (*TAIR) AT3G44160.1 (e_value=0.0) | Symbols: | Outer membrane OMP85 family protein | chr3:15889225-15891814 REVERSE LENGTH=362;; (*ITAG) Solyc11g071890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52301894-52310067 transcript_region:SL2.40ch11:52301894..52310067- go_terms:GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- A2C741_PROM3); contains Interpro domain(s) IPR000184 Bacterial surface antigen (D15) "; GO:0019867 NbS00008103g0016.1 protein AED:0.31 eAED:0.32 QI:0|0.81|0.71|0.96|0.66|0.78|28|840|1423; (*GB) gi|225435153|ref|XP_002284657.1| (e_value=0.0) PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis vinifera];; (*SWP) sp|Q5ZL98|RPC1_CHICK (e_value=0.0) DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1;; (*TAIR) AT5G60040.1 (e_value=0.0) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1376;; (*ITAG) Solyc11g072730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbC25434653g0004.1 protein AED:0.09 eAED:0.19 QI:0|0|0|1|1|1|3|0|340; (*GB) gi|147820956|emb|CAN74574.1| (e_value=1e-53) hypothetical protein VITISV_000296 [Vitis vinifera];; (*SWP) sp|Q94F30|ESD4_ARATH (e_value=2e-49) Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1;; (*TAIR) AT4G15880.1 (e_value=2e-50) | Symbols: ESD4, ATESD4 | Cysteine proteinases superfamily protein | chr4:9012769-9015797 FORWARD LENGTH=489;; (*ITAG) Solyc12g099530.1.1 (e_value=5e-119) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64988458-64992828 transcript_region:SL2.40ch12:64988458..64992828+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00008657g0009.1 protein AED:0.20 eAED:0.20 QI:255|1|1|1|0.66|0.5|4|261|99; (*GB) gi|255541426|ref|XP_002511777.1| (e_value=6e-47) Protein C9orf74, putative [Ricinus communis];; (*SWP) sp|B3H7G2|URM12_ARATH (e_value=2e-42) Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana GN=URM1-2 PE=3 SV=1;; (*TAIR) AT3G61113.1 (e_value=1e-43) | Symbols: | Ubiquitin related modifier 1 | chr3:22614582-22615415 REVERSE LENGTH=99;; (*ITAG) Solyc01g091890.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:77187458-77190241 transcript_region:SL2.40ch01:77187458..77190241- go_terms:GO:0042803 functional_description:"Ubiquitin-related modifier 1 homolog (AHRD V1 ***- C1BWZ5_ESOLU); contains Interpro domain(s) IPR015221 Ubiquitin related modifier 1 "; GO:0042803 NbS00008657g0008.1 protein AED:0.14 eAED:0.14 QI:156|1|1|1|1|1|7|328|362; (*GB) gi|296089136|emb|CBI38839.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A8N0V8|GET3_COPC7 (e_value=5e-118) ATPase GET3 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=GET3 PE=3 SV=1;; (*TAIR) AT1G01910.4 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:313595-315831 REVERSE LENGTH=353;; (*ITAG) Solyc01g091880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77181467-77186744 transcript_region:SL2.40ch01:77181467..77186744+ go_terms:GO:0005515 functional_description:"ATPase (AHRD V1 ***- D3E0U6_METRM); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515 NbS00040857g0006.1 protein AED:0.01 eAED:0.01 QI:299|1|1|1|1|1|2|250|497; (*GB) gi|225435155|ref|XP_002281741.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera];; (*SWP) sp|Q9LVG9|Y5600_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g60050 OS=Arabidopsis thaliana GN=At5g60050 PE=2 SV=1;; (*TAIR) AT5G60050.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr5:24183680-24185264 REVERSE LENGTH=499;; (*ITAG) Solyc11g072720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53004187-53006550 transcript_region:SL2.40ch11:53004187..53006550+ go_terms:GO:0005515 functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00001817g0017.1 protein AED:0.15 eAED:0.15 QI:344|1|1|1|1|1|6|163|465; (*GB) gi|363808214|ref|NP_001242232.1| (e_value=0.0) uncharacterized protein LOC100802136 [Glycine max];; (*TAIR) AT1G15980.1 (e_value=0.0) | Symbols: NDF1, NDH48 | NDH-dependent cyclic electron flow 1 | chr1:5489314-5491199 FORWARD LENGTH=461;; (*ITAG) Solyc03g116870.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60179636-60182347 transcript_region:SL2.40ch03:60179636..60182347- functional_description:"Glycosyl transferase family 9 (AHRD V1 ***- A0YHY3_LYNSP)"; NbS00001817g0013.1 protein AED:0.18 eAED:0.18 QI:227|0.75|0.6|1|1|1|5|0|329; (*GB) gi|350539775|ref|NP_001234526.1| (e_value=2e-140) JA-induced WRKY protein [Solanum lycopersicum];; (*SWP) sp|Q9SAH7|WRK40_ARATH (e_value=1e-81) Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1;; (*TAIR) AT1G80840.1 (e_value=1e-82) | Symbols: WRKY40, ATWRKY40 | WRKY DNA-binding protein 40 | chr1:30383834-30385356 FORWARD LENGTH=302;; (*ITAG) Solyc03g116890.2.1 (e_value=2e-148) genomic_reference:SL2.40ch03 gene_region:60192911-60195340 transcript_region:SL2.40ch03:60192911..60195340- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C0L2R9_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00001817g0019.1 protein AED:0.19 eAED:0.19 QI:0|0.83|0.92|0.92|0.83|0.84|13|191|510; (*GB) gi|238769997|dbj|BAH66919.1| (e_value=0.0) metal transporter [Nicotiana tabacum];; (*SWP) sp|Q9S9N8|NRAM6_ARATH (e_value=0.0) Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2;; (*TAIR) AT1G15960.1 (e_value=0.0) | Symbols: NRAMP6, ATNRAMP6 | NRAMP metal ion transporter 6 | chr1:5482202-5485066 REVERSE LENGTH=527;; (*ITAG) Solyc03g116900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60219461-60227937 transcript_region:SL2.40ch03:60219461..60227937+ go_terms:GO:0005384 functional_description:"Manganese transporter MntH (AHRD V1 **-* D3KPZ0_LISMO); contains Interpro domain(s) IPR001046 Natural resistance-associated macrophage protein "; GO:0005384 NbS00001817g0025.1 protein AED:0.25 eAED:0.25 QI:0|1|0.8|1|0.5|0.6|5|0|399; (*GB) gi|255576987|ref|XP_002529378.1| (e_value=2e-119) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=2e-38) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G57970.2 (e_value=4e-107) | Symbols: | DNA glycosylase superfamily protein | chr5:23467316-23468910 FORWARD LENGTH=347;; (*ITAG) Solyc03g116880.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60185228-60191947 transcript_region:SL2.40ch03:60185228..60191947+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00009486g0006.1 protein AED:0.03 eAED:0.03 QI:218|1|1|1|0.66|0.5|4|0|158; (*GB) gi|224117660|ref|XP_002317636.1| (e_value=2e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g068250.2.1 (e_value=2e-11) genomic_reference:SL2.40ch02 gene_region:32821758-32822119 transcript_region:SL2.40ch02:32821758..32822119- functional_description:"Unknown Protein (AHRD V1)"; NbS00009486g0005.1 protein AED:0.28 eAED:0.29 QI:0|0|0|0.6|1|1|5|0|408; (*GB) gi|388510544|gb|AFK43338.1| (e_value=1e-56) unknown [Lotus japonicus];; (*SWP) sp|Q9M2C0|VITH4_ARATH (e_value=8e-13) Vacuolar iron transporter homolog 4 OS=Arabidopsis thaliana GN=At3g43660 PE=2 SV=1;; (*TAIR) AT3G51510.1 (e_value=1e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:19109118-19109842 FORWARD LENGTH=181;; (*ITAG) Solyc02g068260.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32824828-32825673 transcript_region:SL2.40ch02:32824828..32825673- functional_description:"Integral membrane protein (AHRD V1 *-*- B6U6B5_MAIZE); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00028682g0003.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|1|1|7|294|334; (*GB) gi|224096339|ref|XP_002310606.1| (e_value=3e-150) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5J9|Y5483_ARATH (e_value=5e-138) Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis thaliana GN=At5g64813 PE=1 SV=1;; (*TAIR) AT5G64813.1 (e_value=4e-139) | Symbols: LIP1 | Ras-related small GTP-binding family protein | chr5:25910836-25912625 FORWARD LENGTH=342;; (*ITAG) Solyc04g051700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50170666-50177775 transcript_region:SL2.40ch04:50170666..50177775+ go_terms:GO:0003924 functional_description:"Ras-related protein RAB-4 (AHRD V1 *-*- Q26693_TRYBR); contains Interpro domain(s) IPR013684 Miro-like "; GO:0003924 NbS00028682g0004.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.25|1|1|4|0|182; (*GB) gi|225466165|ref|XP_002262994.1| (e_value=4e-67) PREDICTED: uncharacterized protein At5g64816 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L8Q8|Y5486_ARATH (e_value=2e-68) Uncharacterized protein At5g64816 OS=Arabidopsis thaliana GN=At5g64816 PE=2 SV=1;; (*TAIR) AT5G64816.2 (e_value=2e-69) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25913487-25913879 FORWARD LENGTH=130;; (*ITAG) Solyc04g051710.1.1 (e_value=1e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:50180662-50181042 transcript_region:SL2.40ch04:50180662..50181042+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028682g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|0|149; (*GB) gi|225438539|ref|XP_002275864.1| (e_value=2e-22) PREDICTED: uncharacterized protein LOC100261058 [Vitis vinifera];; (*TAIR) AT5G64820.1 (e_value=7e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25913999-25914523 REVERSE LENGTH=145;; (*ITAG) Solyc04g051720.2.1 (e_value=1e-60) genomic_reference:SL2.40ch04 gene_region:50181344-50183153 transcript_region:SL2.40ch04:50181344..50183153- functional_description:"Genomic DNA chromosome 5 P1 clone MXK3 (AHRD V1 ***- Q9LV95_ARATH)"; NbS00007158g0006.1 protein AED:0.00 eAED:0.00 QI:68|1|1|1|0|0|3|90|367; (*GB) gi|386576426|gb|AFJ12117.1| (e_value=0.0) glycosyltransferase, partial [Nicotiana tabacum];; (*SWP) sp|Q9ZQC6|IRX9_ARATH (e_value=3e-135) Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1;; (*TAIR) AT2G37090.1 (e_value=2e-136) | Symbols: IRX9 | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15587671-15589223 REVERSE LENGTH=351;; (*ITAG) Solyc09g007420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:990503-994261 transcript_region:SL2.40ch09:990503..994261- go_terms:GO:0015018 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-* B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0015018 NbS00007158g0001.1 protein AED:0.12 eAED:0.12 QI:206|0.6|0.83|1|0.8|0.66|6|320|399; (*GB) gi|356545965|ref|XP_003541403.1| (e_value=1e-124) PREDICTED: protein IQ-DOMAIN 1-like [Glycine max];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=3e-64) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT5G03040.3 (e_value=1e-93) | Symbols: iqd2 | IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461;; (*ITAG) Solyc09g007410.2.1 (e_value=2e-180) genomic_reference:SL2.40ch09 gene_region:985216-988218 transcript_region:SL2.40ch09:985216..988218- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* C5HYF8_BRARP); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00007158g0003.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.4|1|1|5|0|391; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-33) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=9e-64) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001731g0013.1 protein AED:0.12 eAED:0.14 QI:0|0.45|0.25|1|0.63|0.5|12|0|677; (*GB) gi|302142715|emb|CBI19918.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-100) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G20160.2 (e_value=0.0) | Symbols: ATSBT5.2 | Subtilisin-like serine endopeptidase family protein | chr1:6990852-6993737 REVERSE LENGTH=730;; (*ITAG) Solyc04g081810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00001731g0008.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|4|0|187; (*GB) gi|4027895|gb|AAC96079.1| (e_value=5e-112) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q7XWU8|EXPA1_ORYSJ (e_value=7e-86) Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2;; (*TAIR) AT1G20190.1 (e_value=7e-87) | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1.14, EXPA11 | expansin 11 | chr1:6998762-6999710 REVERSE LENGTH=252;; (*ITAG) Solyc12g089380.1.1 (e_value=8e-99) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62933298-62935296 transcript_region:SL2.40ch12:62933298..62935296- go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9FVH0_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00001731g0002.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.5|0.83|1|1|6|33|525; (*GB) gi|359492285|ref|XP_002279250.2| (e_value=8e-71) PREDICTED: uncharacterized protein LOC100243746 [Vitis vinifera];; (*TAIR) AT5G66100.1 (e_value=8e-14) | Symbols: | winged-helix DNA-binding transcription factor family protein | chr5:26427639-26429772 FORWARD LENGTH=453;; (*ITAG) Solyc04g081820.2.1 (e_value=5e-104) genomic_reference:SL2.40ch04 gene_region:63303699-63308948 transcript_region:SL2.40ch04:63303699..63308948- functional_description:"La domain containing protein expressed (AHRD V1 *--- Q8LMP9_ORYSJ); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; NbS00005167g0010.1 protein AED:0.19 eAED:0.19 QI:206|1|1|1|0.8|0.66|6|154|370; (*GB) gi|225452252|ref|XP_002269274.1| (e_value=0.0) PREDICTED: abhydrolase domain-containing protein FAM108B1 [Vitis vinifera];; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=3e-74) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1 PE=2 SV=1;; (*TAIR) AT5G14390.1 (e_value=3e-175) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:4637551-4639575 REVERSE LENGTH=369;; (*ITAG) Solyc02g067920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32585049-32590884 transcript_region:SL2.40ch02:32585049..32590884+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 *--- C0HAS5_SALSA)"; NbS00005167g0001.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|100 NbS00005167g0011.1 protein AED:0.13 eAED:0.13 QI:353|0.9|0.90|1|1|1|11|243|407; (*GB) gi|225452250|ref|XP_002271417.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase [NAD+] [Vitis vinifera];; (*SWP) sp|P52425|GPDA_CUPLA (e_value=0.0) Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1;; (*TAIR) AT5G40610.1 (e_value=0.0) | Symbols: | NAD-dependent glycerol-3-phosphate dehydrogenase family protein | chr5:16265071-16267258 REVERSE LENGTH=400;; (*ITAG) Solyc02g067930.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32590970-32593864 transcript_region:SL2.40ch02:32590970..32593864- go_terms:GO:0004367 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** B4FZV9_MAIZE); contains Interpro domain(s) IPR017751 NAD-dependent glycerol-3-phosphate dehydrogenase, eukaryotic "; GO:0004367 NbS00005167g0113.1 protein AED:0.00 eAED:0.00 QI:78|1|1|1|0.5|0.6|5|1122|165 NbS00005167g0114.1 protein AED:0.12 eAED:0.12 QI:151|1|1|1|1|1|8|376|385 NbS00005167g0115.1 protein AED:0.04 eAED:0.06 QI:489|0.5|0.4|1|0.25|0.4|5|0|526 NbS00005167g0103.1 protein AED:0.18 eAED:0.18 QI:0|0.71|0.6|1|1|1|15|624|764 NbS00003779g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.75|0.71|1|0.7|0.76|21|0|851; (*GB) gi|296084812|emb|CBI27694.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54BW6|TTC27_DICDI (e_value=1e-52) Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium discoideum GN=ttc27 PE=3 SV=1;; (*TAIR) AT5G17270.1 (e_value=0.0) | Symbols: | Protein prenylyltransferase superfamily protein | chr5:5679995-5685597 FORWARD LENGTH=899;; (*ITAG) Solyc07g008760.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3728618-3747433 transcript_region:SL2.40ch07:3728618..3747433- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat (TPR)-containing protein-like protein (AHRD V1 ***- Q84NS6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003779g0010.1 protein AED:0.29 eAED:0.31 QI:0|1|0|1|1|1|2|0|242; (*GB) gi|218200711|gb|EEC83138.1| (e_value=1e-14) hypothetical protein OsI_28321 [Oryza sativa Indica Group];; (*ITAG) Solyc07g008770.2.1 (e_value=4e-59) genomic_reference:SL2.40ch07 gene_region:3751190-3755390 transcript_region:SL2.40ch07:3751190..3755390+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040273g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|350539147|ref|NP_001234377.1| (e_value=5e-57) DNAJ-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FYB5|DNJ11_ARATH (e_value=1e-26) Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2;; (*TAIR) AT2G17880.1 (e_value=7e-31) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160;; (*ITAG) Solyc04g081530.1.1 (e_value=2e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63070273-63070740 transcript_region:SL2.40ch04:63070273..63070740+ go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ 11 (AHRD V1 *-*- B6SUM8_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00009229g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.33|1|1|3|0|305; (*GB) gi|224140061|ref|XP_002323405.1| (e_value=6e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-88) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT1G52340.1 (e_value=4e-78) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc10g083180.1.1 (e_value=5e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62367751-62373732 transcript_region:SL2.40ch10:62367751..62373732- go_terms:GO:0010301,GO:0043621 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **-* ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301,GO:0043621 NbS00015337g0005.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|82|428; (*GB) gi|224064350|ref|XP_002301432.1| (e_value=3e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|O23090|BH014_ARATH (e_value=2e-68) Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1;; (*TAIR) AT4G00870.1 (e_value=1e-69) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:362230-363639 REVERSE LENGTH=423;; (*ITAG) Solyc10g009270.2.1 (e_value=7e-132) genomic_reference:SL2.40ch10 gene_region:3259314-3261680 transcript_region:SL2.40ch10:3259314..3261680+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00015337g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|99 NbS00003644g0003.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|173; (*ITAG) Solyc09g008760.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2190939-2191652 transcript_region:SL2.40ch09:2190939..2191652+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ "; NbC25326593g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|61; (*ITAG) Solyc07g041030.1.1 (e_value=3e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:48945001-48945339 transcript_region:SL2.40ch07:48945001..48945339- functional_description:"Unknown Protein (AHRD V1)"; NbS00005086g0001.1 protein AED:0.25 eAED:0.34 QI:0|0|0.5|1|0|0|2|175|60 NbS00008750g0004.1 protein AED:0.02 eAED:0.02 QI:129|1|0.5|1|1|1|2|0|428; (*GB) gi|359497406|ref|XP_003635505.1| (e_value=1e-74) PREDICTED: uncharacterized protein LOC100852457 [Vitis vinifera];; (*SWP) sp|Q39117|TGT2_ARATH (e_value=2e-34) Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1;; (*TAIR) AT5G47660.1 (e_value=3e-42) | Symbols: | Homeodomain-like superfamily protein | chr5:19313008-19314636 FORWARD LENGTH=398;; (*ITAG) Solyc11g012720.1.1 (e_value=3e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5485302-5487293 transcript_region:SL2.40ch11:5485302..5487293+ functional_description:"Transcription factor (Fragment) (AHRD V1 *--- D6MK04_9ASPA); contains Interpro domain(s) IPR017877 MYB-like "; NbS00059890g0001.1 protein AED:0.62 eAED:0.72 QI:0|0.25|0|0.6|1|1|5|0|197; (*GB) gi|255547145|ref|XP_002514630.1| (e_value=8e-116) Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis];; (*SWP) sp|Q05048|CSTF1_HUMAN (e_value=8e-47) Cleavage stimulation factor subunit 1 OS=Homo sapiens GN=CSTF1 PE=1 SV=1;; (*TAIR) AT5G60940.1 (e_value=5e-107) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:24523092-24525655 FORWARD LENGTH=429;; (*ITAG) Solyc12g038550.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:35995777-36003738 transcript_region:SL2.40ch12:35995777..36003738+ functional_description:"Cleavage stimulation factor subunit 1-like protein (AHRD V1 *-*- Q9FME6_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00044515g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.71|0.62|1|0.85|0.75|8|357|712; (*GB) gi|224072546|ref|XP_002303777.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9FF46|AB28G_ARATH (e_value=0.0) ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1;; (*TAIR) AT5G60740.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr5:24425824-24430269 REVERSE LENGTH=1109;; (*ITAG) Solyc11g069820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51534465-51544075 transcript_region:SL2.40ch11:51534465..51544075+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 28 (AHRD V1 ***- AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016020,GO:0017111,GO:0016887 NbS00037397g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|225454702|ref|XP_002271171.1| (e_value=1e-79) PREDICTED: putative gamma-glutamylcyclotransferase At3g02910-like [Vitis vinifera];; (*SWP) sp|Q9M8T3|Y2910_ARATH (e_value=2e-75) Putative gamma-glutamylcyclotransferase At3g02910 OS=Arabidopsis thaliana GN=At3g02910 PE=2 SV=2;; (*TAIR) AT3G02910.1 (e_value=1e-76) | Symbols: | AIG2-like (avirulence induced gene) family protein | chr3:649986-650549 FORWARD LENGTH=187;; (*ITAG) Solyc03g097230.1.1 (e_value=8e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:52983896-52984480 transcript_region:SL2.40ch03:52983896..52984480+ go_terms:GO:0008307,GO:0003839 functional_description:"Protein containing AIG2-like domain (AHRD V1 *-*- D9PJU0_9ZZZZ); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like "; GO:0008307,GO:0003839 NbS00037397g0007.1 protein AED:0.29 eAED:0.29 QI:260|0.8|0.66|1|0.2|0.33|6|462|135; (*GB) gi|225454698|ref|XP_002271034.1| (e_value=2e-44) PREDICTED: uncharacterized protein LOC100244367 [Vitis vinifera];; (*SWP) sp|P30725|DNAJ_CLOAB (e_value=2e-12) Chaperone protein DnaJ OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaJ PE=2 SV=2;; (*TAIR) AT5G16650.1 (e_value=4e-44) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:5463446-5465075 REVERSE LENGTH=128;; (*ITAG) Solyc03g097240.2.1 (e_value=2e-62) genomic_reference:SL2.40ch03 gene_region:52990326-52993926 transcript_region:SL2.40ch03:52990326..52993926- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6U8P3_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00037397g0006.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.33|0.66|0.5|1|3|297|88; (*GB) gi|224146080|ref|XP_002325872.1| (e_value=6e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16660.2 (e_value=3e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5465699-5467006 REVERSE LENGTH=166;; (*ITAG) Solyc03g097250.2.1 (e_value=2e-43) genomic_reference:SL2.40ch03 gene_region:52994945-53000265 transcript_region:SL2.40ch03:52994945..53000265- functional_description:"Chromosome 06 contig 1 DNA sequence (AHRD V1 *-*- Q016K0_OSTTA)"; NbS00029974g0003.1 protein AED:0.58 eAED:0.88 QI:0|0|0|0.83|0|0|6|0|212 NbS00001695g0008.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0|0.33|3|0|649; (*GB) gi|359480846|ref|XP_002280702.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Vitis vinifera];; (*SWP) sp|Q9SHZ8|PP168_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1;; (*TAIR) AT2G22070.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786;; (*ITAG) Solyc04g054290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:51426332-51428692 transcript_region:SL2.40ch04:51426332..51428692+ go_terms:GO:0016855 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016855 NbS00001695g0010.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.66|1|0|0.33|3|606|138; (*GB) gi|359480846|ref|XP_002280702.2| (e_value=1e-48) PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Vitis vinifera];; (*SWP) sp|Q9SHZ8|PP168_ARATH (e_value=4e-49) Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1;; (*TAIR) AT2G22070.1 (e_value=3e-50) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786;; (*ITAG) Solyc04g054290.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:51426332-51428692 transcript_region:SL2.40ch04:51426332..51428692+ go_terms:GO:0016855 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016855 NbS00001695g0009.1 protein AED:0.47 eAED:0.47 QI:0|0|0|1|0|0|2|0|91; (*GB) gi|296082479|emb|CBI21484.3| (e_value=4e-21) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SHZ8|PP168_ARATH (e_value=1e-16) Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1;; (*TAIR) AT2G22070.1 (e_value=9e-18) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786;; (*ITAG) Solyc04g054290.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:51426332-51428692 transcript_region:SL2.40ch04:51426332..51428692+ go_terms:GO:0016855 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016855 NbS00048496g0006.1 protein AED:0.11 eAED:0.12 QI:303|0.88|0.85|1|0.76|0.77|27|0|1461; (*GB) gi|125535486|gb|EAY81974.1| (e_value=0.0) hypothetical protein OsI_37152 [Oryza sativa Indica Group];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=0.0) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=0.0) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc06g051310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31032238-31043527 transcript_region:SL2.40ch06:31032238..31043527+ go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00048496g0007.1 protein AED:0.35 eAED:0.51 QI:139|0|0.25|1|0.33|0.5|4|0|163; (*GB) gi|357490981|ref|XP_003615778.1| (e_value=2e-31) FAR1-related protein [Medicago truncatula];; (*SWP) sp|Q9LKR4|FRS10_ARATH (e_value=5e-28) Putative protein FAR1-RELATED SEQUENCE 10 OS=Arabidopsis thaliana GN=FRS10 PE=2 SV=2;; (*TAIR) AT5G28530.1 (e_value=4e-29) | Symbols: FRS10 | FAR1-related sequence 10 | chr5:10525078-10527300 REVERSE LENGTH=685;; (*ITAG) Solyc07g045520.2.1 (e_value=5e-32) genomic_reference:SL2.40ch07 gene_region:55960774-55963655 transcript_region:SL2.40ch07:55960774..55963655+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 11 (AHRD V1 **-- FRS11_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00015624g0009.1 protein AED:0.06 eAED:0.06 QI:131|1|0.66|1|1|1|3|0|378; (*GB) gi|225468618|ref|XP_002266049.1| (e_value=2e-143) PREDICTED: uncharacterized protein LOC100245492 [Vitis vinifera];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=4e-70) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT4G21440.1 (e_value=1e-111) | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | chr4:11418425-11419652 REVERSE LENGTH=350;; (*ITAG) Solyc02g079280.2.1 (e_value=1e-166) genomic_reference:SL2.40ch02 gene_region:38467652-38469093 transcript_region:SL2.40ch02:38467652..38469093+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9LDR8_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00015624g0014.1 protein AED:0.09 eAED:0.24 QI:65|0.66|0.5|1|0|0.25|4|0|135; (*GB) gi|28200388|gb|AAO31791.1| (e_value=4e-63) SP2G [Solanum lycopersicum];; (*SWP) sp|Q9XFK7|MFT_ARATH (e_value=1e-34) Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1;; (*TAIR) AT1G18100.1 (e_value=1e-35) | Symbols: E12A11, MFT | PEBP (phosphatidylethanolamine-binding protein) family protein | chr1:6228049-6230110 REVERSE LENGTH=173;; (*ITAG) Solyc02g079290.2.1 (e_value=7e-66) genomic_reference:SL2.40ch02 gene_region:38483107-38484365 transcript_region:SL2.40ch02:38483107..38484365+ go_terms:GO:0008429 functional_description:"SELF PRUNING 2G"; GO:0008429 NbS00015624g0006.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.66|1|1|3|0|201; (*ITAG) Solyc08g044310.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00015624g0008.1 protein AED:0.07 eAED:0.07 QI:474|0.88|0.6|1|0.66|0.7|10|0|1031; (*GB) gi|255567441|ref|XP_002524700.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5ZIX8|KDM3A_CHICK (e_value=3e-15) Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1;; (*TAIR) AT4G21430.1 (e_value=2e-124) | Symbols: B160 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr4:11407835-11412159 REVERSE LENGTH=927;; (*ITAG) Solyc02g079300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38484926-38494133 transcript_region:SL2.40ch02:38484926..38494133- go_terms:GO:0032454,GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7M504_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbS00021800g0005.1 protein AED:0.21 eAED:0.21 QI:155|1|0.83|1|1|1|6|352|199; (*GB) gi|255563364|ref|XP_002522685.1| (e_value=4e-72) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G33625.2 (e_value=2e-69) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16153114-16154543 REVERSE LENGTH=199;; (*ITAG) Solyc01g105980.2.1 (e_value=7e-108) genomic_reference:SL2.40ch01 gene_region:85736252-85741419 transcript_region:SL2.40ch01:85736252..85741419- functional_description:"Unknown Protein (AHRD V1)"; NbS00032379g0003.1 protein AED:0.09 eAED:0.12 QI:0|0|0|1|1|1|2|0|283; (*GB) gi|379056266|dbj|BAL68173.1| (e_value=2e-85) ethylene response factor #229 [Nicotiana tabacum];; (*SWP) sp|Q9SXS8|ERF3_TOBAC (e_value=2e-55) Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1;; (*TAIR) AT1G50640.1 (e_value=8e-31) | Symbols: ERF3, ATERF3 | ethylene responsive element binding factor 3 | chr1:18757602-18758279 REVERSE LENGTH=225;; (*ITAG) Solyc10g006130.1.1 (e_value=1e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:863907-864572 transcript_region:SL2.40ch10:863907..864572- go_terms:GO:0005515,GO:0003700 functional_description:"Ethylene responsive transcription factor 3a (AHRD V1 **** C0J9I5_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005515,GO:0003700 NbS00032379g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.25|1|0.33|0.5|4|0|335; (*GB) gi|224056355|ref|XP_002298818.1| (e_value=5e-110) predicted protein [Populus trichocarpa];; (*TAIR) AT3G20300.1 (e_value=3e-104) | Symbols: | Protein of unknown function (DUF3537) | chr3:7079832-7081809 REVERSE LENGTH=452;; (*ITAG) Solyc10g006120.1.1 (e_value=3e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:854794-857594 transcript_region:SL2.40ch10:854794..857594- functional_description:"Extracellular ligand-gated ion channel (AHRD V1 ***- D7LAY2_ARALY)"; NbS00050775g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|19|653; (*GB) gi|225464343|ref|XP_002271970.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc08g069110.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55384978-55387142 transcript_region:SL2.40ch08:55384978..55387142+ go_terms:GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-*- B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0010280 NbS00003039g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.57|0.5|1|0.71|0.75|8|0|551; (*GB) gi|225428572|ref|XP_002284665.1| (e_value=0.0) PREDICTED: probable E3 ubiquitin-protein ligase ARI1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84RR2|ARI2_ARATH (e_value=0.0) Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1;; (*TAIR) AT2G16090.1 (e_value=0.0) | Symbols: ARI2, ATARI2 | RING/U-box superfamily protein | chr2:6987367-6989822 REVERSE LENGTH=593;; (*ITAG) Solyc01g109280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88033361-88040424 transcript_region:SL2.40ch01:88033361..88040424- go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00003039g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.57|1|0.83|0.71|7|0|376; (*GB) gi|28916180|gb|AAO59425.1| (e_value=1e-127) putative ternary complex factor MIP1 [Antirrhinum majus];; (*TAIR) AT5G66600.3 (e_value=4e-91) | Symbols: | Protein of unknown function, DUF547 | chr5:26575105-26578315 REVERSE LENGTH=614;; (*ITAG) Solyc01g109270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88018018-88020994 transcript_region:SL2.40ch01:88018018..88020994- functional_description:"Ternary complex factor MIP1 (AHRD V1 **-- B6UE27_MAIZE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00003039g0011.1 protein AED:0.27 eAED:0.27 QI:286|1|1|1|0.5|0.42|7|153|251; (*GB) gi|255556139|ref|XP_002519104.1| (e_value=4e-134) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|Q80Z60|ECE2_MOUSE (e_value=1e-27) Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2;; (*TAIR) AT4G34360.1 (e_value=8e-127) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16432011-16433752 FORWARD LENGTH=248;; (*ITAG) Solyc01g109290.2.1 (e_value=2e-174) genomic_reference:SL2.40ch01 gene_region:88044600-88047738 transcript_region:SL2.40ch01:88044600..88047738- go_terms:GO:0016279 functional_description:"Methyltransferase (AHRD V1 **** D0N411_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016279 NbS00027043g0012.1 protein AED:0.11 eAED:0.22 QI:0|0|0|1|1|1|2|0|275; (*GB) gi|359485591|ref|XP_003633292.1| (e_value=3e-39) PREDICTED: uncharacterized protein LOC100249867 [Vitis vinifera];; (*TAIR) AT5G59350.1 (e_value=7e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23941132-23941995 FORWARD LENGTH=287;; (*ITAG) Solyc05g054530.1.1 (e_value=7e-85) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63579675-63580580 transcript_region:SL2.40ch05:63579675..63580580- functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 *-*- Q9LTJ3_ARATH)"; NbS00027043g0001.1 protein AED:0.14 eAED:0.14 QI:183|0.90|0.91|1|0.90|0.83|12|357|369; (*GB) gi|37787343|gb|AAP50511.1| (e_value=0.0) geranylgeranyltransferase type I beta subunit [Catharanthus roseus];; (*SWP) sp|Q5EAD5|PGTB1_BOVIN (e_value=6e-82) Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1;; (*TAIR) AT2G39550.1 (e_value=1e-152) | Symbols: ATGGT-IB, GGB, PGGT-I | Prenyltransferase family protein | chr2:16501666-16504144 FORWARD LENGTH=375;; (*ITAG) Solyc05g054520.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63571270-63577255 transcript_region:SL2.40ch05:63571270..63577255+ go_terms:GO:0004662 functional_description:"Geranylgeranyl transferase type i beta subunit (AHRD V1 ***- Q17K57_AEDAE); contains Interpro domain(s) IPR008930 Terpenoid cylases/protein prenyltransferase alpha-alpha toroid "; GO:0004662 NbS00011706g0020.1 protein AED:0.20 eAED:0.21 QI:4|0.61|0.63|1|0.55|0.63|19|369|1084; (*GB) gi|296088648|emb|CBI37639.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UHC1|MLH3_HUMAN (e_value=3e-25) DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3;; (*TAIR) AT4G35520.1 (e_value=3e-73) | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | chr4:16865488-16871527 FORWARD LENGTH=1169;; (*ITAG) Solyc02g082660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40880286-40891972 transcript_region:SL2.40ch02:40880286..40891972+ go_terms:GO:0005524,GO:0006298 functional_description:"DNA mismatch repair protein mutL (AHRD V1 *-*- C7IG10_9CLOT); contains Interpro domain(s) IPR002099 DNA mismatch repair protein "; GO:0005524,GO:0006298 NbS00011706g0019.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|1|1|3|564|271; (*GB) gi|225431415|ref|XP_002272863.1| (e_value=9e-110) PREDICTED: WUSCHEL-related homeobox 13-like [Vitis vinifera];; (*SWP) sp|Q5QMM3|WOX8_ORYSJ (e_value=3e-83) WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1;; (*TAIR) AT4G35550.1 (e_value=7e-80) | Symbols: HB-4, WOX13, ATWOX13 | WUSCHEL related homeobox 13 | chr4:16875814-16877167 REVERSE LENGTH=268;; (*ITAG) Solyc02g082670.2.1 (e_value=2e-166) genomic_reference:SL2.40ch02 gene_region:40892965-40895886 transcript_region:SL2.40ch02:40892965..40895886- go_terms:GO:0003677 functional_description:"WUSCHEL-related homeobox 14 (AHRD V1 ***- B6T910_MAIZE); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677 NbS00030172g0006.1 protein AED:0.24 eAED:0.26 QI:0|0.47|0.44|1|0.82|0.77|18|98|1750; (*GB) gi|359489473|ref|XP_002267626.2| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Vitis vinifera];; (*SWP) sp|Q0P5W1|VPS8_MOUSE (e_value=9e-55) Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus GN=Vps8 PE=2 SV=1;; (*TAIR) AT4G00800.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:337114-345581 REVERSE LENGTH=1913;; (*ITAG) Solyc05g044610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:56327245-56343343 transcript_region:SL2.40ch05:56327245..56343343- go_terms:GO:0006508,GO:0008270,GO:0005488 functional_description:"Vacuolar protein sorting-associated protein 8 (AHRD V1 *--- D0NE39_PHYIN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0006508,GO:0008270,GO:0005488 NbS00016100g0017.1 protein AED:0.04 eAED:0.06 QI:198|0.92|0.85|1|0.53|0.71|14|349|1150; (*GB) gi|224072546|ref|XP_002303777.1| (e_value=0.0) white-brown-complex ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9FF46|AB28G_ARATH (e_value=0.0) ABC transporter G family member 28 OS=Arabidopsis thaliana GN=ABCG28 PE=3 SV=1;; (*TAIR) AT5G60740.1 (e_value=0.0) | Symbols: | ABC transporter family protein | chr5:24425824-24430269 REVERSE LENGTH=1109;; (*ITAG) Solyc11g069820.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51534465-51544075 transcript_region:SL2.40ch11:51534465..51544075+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 28 (AHRD V1 ***- AB28G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016020,GO:0017111,GO:0016887 NbS00016100g0018.1 protein AED:0.07 eAED:0.07 QI:46|0.66|0.7|1|0.77|0.8|10|119|563; (*GB) gi|224106812|ref|XP_002314293.1| (e_value=5e-174) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60720.1 (e_value=6e-118) | Symbols: | Protein of unknown function, DUF547 | chr5:24418436-24422177 REVERSE LENGTH=691;; (*ITAG) Solyc11g069840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51553588-51559860 transcript_region:SL2.40ch11:51553588..51559860+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00016100g0001.1 protein AED:0.24 eAED:0.26 QI:0|0|0|0.71|1|1|7|0|455; (*GB) gi|297746288|emb|CBI16344.3| (e_value=3e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37025.2 (e_value=4e-23) | Symbols: TRFL8 | TRF-like 8 | chr2:15550042-15551957 FORWARD LENGTH=410;; (*ITAG) Solyc11g069850.1.1 (e_value=2e-107) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51561731-51564792 transcript_region:SL2.40ch11:51561731..51564792+ go_terms:GO:0003677,GO:0045449 functional_description:"Telomere repeat-binding protein 4 (AHRD V1 *-*- TRP4_ARATH); contains Interpro domain(s) IPR001005 SANT, DNA-binding "; GO:0003677,GO:0045449 NbS00016100g0016.1 protein AED:0.24 eAED:0.24 QI:210|0.9|0.90|1|0.8|0.81|11|297|395; (*GB) gi|356535619|ref|XP_003536342.1| (e_value=0.0) PREDICTED: putative arsenical pump-driving ATPase-like [Glycine max];; (*SWP) sp|O27555|ARSA_METTH (e_value=1e-48) Putative arsenical pump-driving ATPase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1511 PE=1 SV=1;; (*TAIR) AT3G10350.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411;; (*ITAG) Solyc11g069830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51545301-51552055 transcript_region:SL2.40ch11:51545301..51552055- go_terms:GO:0005515,GO:0015105 functional_description:"Arsenite ATPase transporter (Eurofung) (AHRD V1 **** C8VJ74_EMENI); contains Interpro domain(s) IPR003348 ATPase, anion-transporting "; GO:0005515,GO:0015105 NbS00029848g0003.1 protein AED:0.35 eAED:0.50 QI:0|0.5|0.33|1|0.5|0.33|3|145|123; (*GB) gi|388512117|gb|AFK44120.1| (e_value=3e-35) unknown [Medicago truncatula];; (*SWP) sp|Q9LIQ6|ING1_ARATH (e_value=1e-32) PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1;; (*TAIR) AT3G24010.1 (e_value=1e-33) | Symbols: ING1, ATING1 | RING/FYVE/PHD zinc finger superfamily protein | chr3:8676120-8678186 REVERSE LENGTH=234;; (*ITAG) Solyc09g091190.2.1 (e_value=1e-40) genomic_reference:SL2.40ch09 gene_region:65856500-65861321 transcript_region:SL2.40ch09:65856500..65861321- go_terms:GO:0003713 functional_description:"Inhibitor of growth protein 5 (AHRD V1 *-*- B6T7N2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003713 NbS00029519g0002.1 protein AED:0.25 eAED:0.25 QI:176|0.57|0.33|0.86|0.85|0.86|15|0|1313; (*GB) gi|225427157|ref|XP_002277547.1| (e_value=0.0) PREDICTED: ABC transporter B family member 2 [Vitis vinifera];; (*SWP) sp|Q8LPK2|AB2B_ARATH (e_value=0.0) ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3;; (*TAIR) AT4G25960.1 (e_value=0.0) | Symbols: PGP2 | P-glycoprotein 2 | chr4:13177438-13183425 FORWARD LENGTH=1273;; (*ITAG) Solyc08g076720.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57827103-57836786 transcript_region:SL2.40ch08:57827103..57836786- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein TM_0288 (AHRD V1 *--* Y288_THEMA); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00031537g0009.1 protein AED:0.00 eAED:0.06 QI:455|1|0.66|1|0.5|0.66|3|0|538; (*GB) gi|147822385|emb|CAN59896.1| (e_value=5e-152) hypothetical protein VITISV_002883 [Vitis vinifera];; (*SWP) sp|Q7X9B9|NLP2_ARATH (e_value=6e-109) Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3;; (*TAIR) AT4G35270.1 (e_value=4e-110) | Symbols: | Plant regulator RWP-RK family protein | chr4:16777657-16780824 REVERSE LENGTH=963;; (*ITAG) Solyc01g112190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:90015884-90019117 transcript_region:SL2.40ch01:90015884..90019117+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 ***- A9DMJ4_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00031537g0003.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|1|1|3|0|251; (*GB) gi|356516156|ref|XP_003526762.1| (e_value=4e-42) PREDICTED: uncharacterized protein LOC100803861 [Glycine max];; (*TAIR) AT4G38280.1 (e_value=5e-23) | Symbols: | BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17942034-17942864 FORWARD LENGTH=170;; (*ITAG) Solyc01g112180.2.1 (e_value=8e-128) genomic_reference:SL2.40ch01 gene_region:90004018-90010183 transcript_region:SL2.40ch01:90004018..90010183+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031537g0006.1 protein AED:0.89 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|89 NbS00033530g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|652|115; (*GB) gi|357136421|ref|XP_003569803.1| (e_value=1e-35) PREDICTED: dynamin-like protein C-like [Brachypodium distachyon];; (*SWP) sp|F4HPR5|DRP5A_ARATH (e_value=5e-34) Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1;; (*TAIR) AT1G53140.1 (e_value=4e-35) | Symbols: DRP5A | Dynamin related protein 5A | chr1:19799271-19802441 FORWARD LENGTH=817;; (*ITAG) Solyc07g063080.2.1 (e_value=6e-46) genomic_reference:SL2.40ch07 gene_region:62881275-62885932 transcript_region:SL2.40ch07:62881275..62885932- go_terms:GO:0005525 functional_description:"Dynamin family protein (AHRD V1 ***- D7KKE2_ARALY); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00033530g0005.1 protein AED:0.35 eAED:0.39 QI:269|0.5|0.8|1|0.75|0.8|5|381|23 NbS00038053g0009.1 protein AED:0.10 eAED:0.17 QI:0|0|0|1|0.25|0.2|5|0|246; (*GB) gi|445050|prf||1908371B (e_value=3e-48) nitrite reductase;; (*SWP) sp|Q39161|NIR_ARATH (e_value=9e-47) Ferredoxin--nitrite reductase, chloroplastic OS=Arabidopsis thaliana GN=NIR1 PE=1 SV=1;; (*TAIR) AT2G15620.1 (e_value=7e-48) | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810552-6812666 FORWARD LENGTH=586;; (*ITAG) Solyc01g108630.2.1 (e_value=4e-49) genomic_reference:SL2.40ch01 gene_region:87640633-87643378 transcript_region:SL2.40ch01:87640633..87643378+ go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76KB0_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region "; GO:0005515 NbS00038053g0006.1 protein AED:0.22 eAED:0.25 QI:0|0|0|1|1|1|2|0|282; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=2e-38) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=1e-34) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=1e-35) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc01g108640.1.1 (e_value=2e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00038053g0002.1 protein AED:0.38 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|117; (*ITAG) Solyc01g108640.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00016665g0101.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|168 NbS00016665g0102.1 protein AED:0.24 eAED:0.24 QI:273|1|1|1|0.83|0.71|7|250|186 NbS00052399g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.75|1|1|4|0|246; (*GB) gi|296082558|emb|CBI21563.3| (e_value=1e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CH36|S36A4_MOUSE (e_value=1e-14) Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1;; (*TAIR) AT5G65990.1 (e_value=8e-65) | Symbols: | Transmembrane amino acid transporter family protein | chr5:26394955-26396321 FORWARD LENGTH=427;; (*ITAG) Solyc03g032090.1.1 (e_value=9e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8889972-8891255 transcript_region:SL2.40ch03:8889972..8891255+ go_terms:GO:0015187 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015187 NbS00038800g0015.1 protein AED:0.13 eAED:0.13 QI:127|0.6|0.83|0.83|0.8|0.66|6|427|653; (*GB) gi|298569788|gb|ADI87422.1| (e_value=0.0) fructokinase-like protein 2 [Nicotiana benthamiana];; (*SWP) sp|Q42896|SCRK2_SOLLC (e_value=1e-41) Fructokinase-2 OS=Solanum lycopersicum GN=FRK2 PE=2 SV=2;; (*TAIR) AT1G69200.1 (e_value=0.0) | Symbols: FLN2 | fructokinase-like 2 | chr1:26016018-26018365 FORWARD LENGTH=616;; (*ITAG) Solyc05g012100.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5311181-5315705 transcript_region:SL2.40ch05:5311181..5315705+ functional_description:"Fructokinase-like protein 2 (AHRD V1 **-- D9IWP0_NICBE); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00038800g0005.1 protein AED:0.32 eAED:0.36 QI:0|1|0|1|1|1|2|0|117; (*GB) gi|224108870|ref|XP_002314997.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42342|CYB51_ARATH (e_value=3e-23) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT1G26340.1 (e_value=1e-36) | Symbols: B5 #6, ATCB5-A, CB5-A | cytochrome B5 isoform A | chr1:9113992-9114755 FORWARD LENGTH=135;; (*ITAG) Solyc05g012080.2.1 (e_value=2e-51) genomic_reference:SL2.40ch05 gene_region:5304880-5308084 transcript_region:SL2.40ch05:5304880..5308084+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** Q9FDW8_ARATH); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00038800g0003.1 protein AED:0.04 eAED:0.04 QI:48|1|1|1|0.5|0.6|5|248|298; (*GB) gi|297738103|emb|CBI27304.3| (e_value=3e-100) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69210.1 (e_value=5e-88) | Symbols: | Uncharacterised protein family UPF0090 | chr1:26018583-26020058 REVERSE LENGTH=305;; (*ITAG) Solyc05g012120.2.1 (e_value=3e-158) genomic_reference:SL2.40ch05 gene_region:5328775-5332292 transcript_region:SL2.40ch05:5328775..5332292- functional_description:"Ribosome maturation factor rimP (AHRD V1 *-*- RIMP_LEPIN); contains Interpro domain(s) IPR003728 Uncharacterised protein family UPF0090 "; NbS00038800g0006.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|467; (*GB) gi|238684536|gb|ACR54435.1| (e_value=0.0) dihydropterin pyrophosphokinase-dihydropteroate synthase [Solanum lycopersicum];; (*SWP) sp|P29251|FOL1_PNECA (e_value=4e-86) Folic acid synthesis protein fol1 OS=Pneumocystis carinii GN=fol1 PE=1 SV=1;; (*TAIR) AT4G30000.1 (e_value=0.0) | Symbols: | Dihydropterin pyrophosphokinase / Dihydropteroate synthase | chr4:14670524-14672397 REVERSE LENGTH=554;; (*ITAG) Solyc05g012090.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5308231-5310864 transcript_region:SL2.40ch05:5308231..5310864- go_terms:GO:0004156,GO:0003848 functional_description:"Dihydropteroate synthase (AHRD V1 **** D7KWZ1_ARALY); contains Interpro domain(s) IPR006390 Dihydropteroate synthase "; GO:0004156,GO:0003848 NbS00038800g0019.1 protein AED:0.30 eAED:0.30 QI:1|1|0.66|1|1|1|3|344|266; (*GB) gi|255541996|ref|XP_002512062.1| (e_value=7e-164) 6-phosphogluconolactonase, putative [Ricinus communis];; (*SWP) sp|Q9LMX8|6PGL1_ARATH (e_value=2e-136) Probable 6-phosphogluconolactonase 1 OS=Arabidopsis thaliana GN=At1g13700 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=1e-137) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc05g012110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5316351-5320016 transcript_region:SL2.40ch05:5316351..5320016- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** Q156I4_MANIN); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00044847g0008.1 protein AED:0.10 eAED:0.18 QI:0|0|0|1|0|0.2|5|0|548; (*GB) gi|302802796|ref|XP_002983152.1| (e_value=8e-39) hypothetical protein SELMODRAFT_50872 [Selaginella moellendorffii];; (*SWP) sp|Q9LH74|MSL5_ARATH (e_value=6e-39) Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1;; (*TAIR) AT3G14810.1 (e_value=4e-40) | Symbols: MSL5 | mechanosensitive channel of small conductance-like 5 | chr3:4971223-4974216 REVERSE LENGTH=881;; (*ITAG) Solyc12g094420.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62978008-62981180 transcript_region:SL2.40ch12:62978008..62981180+ go_terms:GO:0016020 functional_description:"Predicted mechanosensitive ion channel (AHRD V1 ***- Q2TZV3_ASPOR); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00044847g0007.1 protein AED:0.31 eAED:0.34 QI:0|0.5|0.14|1|0.66|0.85|7|0|286; (*GB) gi|255567758|ref|XP_002524857.1| (e_value=2e-130) catalytic, putative [Ricinus communis];; (*TAIR) AT5G10460.1 (e_value=5e-106) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:3287822-3289844 FORWARD LENGTH=306;; (*ITAG) Solyc12g038820.1.1 (e_value=4e-115) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:36481364-36482116 transcript_region:SL2.40ch12:36481364..36482116+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IIA (AHRD V1 ***- B6TMM7_MAIZE); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00004904g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|147844669|emb|CAN80057.1| (e_value=3e-26) hypothetical protein VITISV_023146 [Vitis vinifera];; (*TAIR) AT1G14060.1 (e_value=2e-22) | Symbols: | GCK domain-containing protein | chr1:4817354-4817893 REVERSE LENGTH=179;; (*ITAG) Solyc05g013170.2.1 (e_value=2e-41) genomic_reference:SL2.40ch05 gene_region:6254353-6256562 transcript_region:SL2.40ch05:6254353..6256562- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012891 GCK "; NbS00013639g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|80; (*GB) gi|356495958|ref|XP_003516837.1| (e_value=2e-15) PREDICTED: protein PLANT CADMIUM RESISTANCE 9-like [Glycine max];; (*TAIR) AT1G58320.1 (e_value=2e-12) | Symbols: | PLAC8 family protein | chr1:21634123-21635303 REVERSE LENGTH=148;; (*ITAG) Solyc05g009620.2.1 (e_value=4e-47) genomic_reference:SL2.40ch05 gene_region:3820985-3821756 transcript_region:SL2.40ch05:3820985..3821756+ functional_description:"Cell number regulator 3 (AHRD V1 **-- D9HP19_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00003784g0004.1 protein AED:0.21 eAED:0.21 QI:332|0.83|0.71|1|0.66|0.57|7|325|346; (*GB) gi|16610193|emb|CAD10639.1| (e_value=0.0) IAA9 protein [Nicotiana tabacum];; (*SWP) sp|Q38827|IAA9_ARATH (e_value=2e-117) Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1;; (*TAIR) AT5G65670.2 (e_value=1e-120) | Symbols: IAA9 | indole-3-acetic acid inducible 9 | chr5:26254463-26256134 FORWARD LENGTH=336;; (*ITAG) Solyc04g076850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59354651-59358834 transcript_region:SL2.40ch04:59354651..59358834+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 *-*- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00043979g0002.1 protein AED:0.28 eAED:0.31 QI:123|0.64|0.66|0.86|0.92|0.86|15|450|468; (*GB) gi|147837872|emb|CAN60565.1| (e_value=4e-122) hypothetical protein VITISV_013997 [Vitis vinifera];; (*SWP) sp|Q9SVN5|SYM_ARATH (e_value=1e-31) Probable methionine--tRNA ligase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1;; (*TAIR) AT2G40660.1 (e_value=5e-73) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:16966011-16968866 FORWARD LENGTH=389;; (*ITAG) Solyc06g048610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:27850330-27858847 transcript_region:SL2.40ch06:27850330..27858847- go_terms:GO:0032266,GO:0008047,GO:0080025 functional_description:"Methionyl-tRNA synthetase-like protein (AHRD V1 ***- Q8RUP8_ORYSJ); contains Interpro domain(s) IPR002547 tRNA-binding region "; GO:0032266,GO:0008047,GO:0080025 NbS00055417g0003.1 protein AED:0.75 eAED:0.85 QI:2|0|0|0.44|0.5|0.55|9|0|228 NbS00030869g0007.1 protein AED:0.08 eAED:0.08 QI:54|0.66|0.71|1|0.66|0.85|7|133|346; (*GB) gi|147836162|emb|CAN75431.1| (e_value=8e-79) hypothetical protein VITISV_021146 [Vitis vinifera];; (*SWP) sp|Q9ZUG9|BH066_ARATH (e_value=2e-63) Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1;; (*TAIR) AT2G24260.1 (e_value=2e-64) | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-10322177 REVERSE LENGTH=350;; (*ITAG) Solyc12g010170.1.1 (e_value=1e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3285767-3293079 transcript_region:SL2.40ch12:3285767..3293079- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00030869g0008.1 protein AED:0.43 eAED:0.57 QI:4|0.5|0|1|0|0.33|3|0|99; (*GB) gi|356500645|ref|XP_003519142.1| (e_value=3e-38) PREDICTED: uncharacterized protein LOC100780570 [Glycine max];; (*TAIR) AT5G58005.2 (e_value=7e-34) | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr5:23482234-23482757 FORWARD LENGTH=116;; (*ITAG) Solyc12g010150.1.1 (e_value=5e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3279633-3281468 transcript_region:SL2.40ch12:3279633..3281468+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030485g0013.1 protein AED:0.00 eAED:0.00 QI:463|1|1|1|0|0|3|537|489; (*GB) gi|225438599|ref|XP_002276540.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SV96|PP358_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1;; (*TAIR) AT4G39620.1 (e_value=0.0) | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18395294-18397578 FORWARD LENGTH=563;; (*ITAG) Solyc04g054270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:51411028-51413671 transcript_region:SL2.40ch04:51411028..51413671+ functional_description:"Pentatricopeptide repeat protein 5 (AHRD V1 ***- A7LN87_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00030485g0010.1 protein AED:0.12 eAED:0.12 QI:0|0.25|0.4|1|1|1|5|849|784; (*GB) gi|359480846|ref|XP_002280702.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Vitis vinifera];; (*SWP) sp|Q9SHZ8|PP168_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1;; (*TAIR) AT2G22070.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD LENGTH=786;; (*ITAG) Solyc04g054290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:51426332-51428692 transcript_region:SL2.40ch04:51426332..51428692+ go_terms:GO:0016855 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LCN4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016855 NbS00012728g0016.1 protein AED:0.14 eAED:0.14 QI:233|0.91|0.91|1|0.65|0.75|24|576|859; (*GB) gi|297737151|emb|CBI26352.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q940Y9|POLL2_ARATH (e_value=0.0) Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1;; (*TAIR) AT5G43745.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1012) | chr5:17569435-17574954 REVERSE LENGTH=817;; (*ITAG) Solyc09g083250.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64296802-64306618 transcript_region:SL2.40ch09:64296802..64306618+ functional_description:"AT5g02940/F9G14_250 (Fragment) (AHRD V1 ***- Q94AC5_ARATH); contains Interpro domain(s) IPR010420 Protein of unknown function DUF1012 "; NbS00012728g0017.1 protein AED:0.27 eAED:0.27 QI:131|0.71|0.75|0.87|0.71|0.87|8|0|346; (*GB) gi|255551965|ref|XP_002517027.1| (e_value=4e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G43720.1 (e_value=2e-44) | Symbols: | Protein of unknown function (DUF2361) | chr5:17557431-17559238 REVERSE LENGTH=329;; (*ITAG) Solyc09g083270.2.1 (e_value=4e-116) genomic_reference:SL2.40ch09 gene_region:64318745-64324928 transcript_region:SL2.40ch09:64318745..64324928+ functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG92_ARATH); contains Interpro domain(s) IPR019310 Protein of unknown function DUF2361 "; NbS00012728g0014.1 protein AED:0.28 eAED:0.31 QI:0|0.5|0|1|0.25|0.2|5|0|673; (*GB) gi|225432878|ref|XP_002280070.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g48740-like [Vitis vinifera];; (*SWP) sp|Q9C660|PEK10_ARATH (e_value=7e-52) Proline-rich receptor-like protein kinase PERK10 OS=Arabidopsis thaliana GN=PERK10 PE=1 SV=2;; (*TAIR) AT2G33580.1 (e_value=5e-74) | Symbols: | Protein kinase superfamily protein | chr2:14219848-14221842 REVERSE LENGTH=664;; (*ITAG) Solyc09g083210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64275265-64279535 transcript_region:SL2.40ch09:64275265..64279535+ go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- RPK1_IPONI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00012728g0015.1 protein AED:0.32 eAED:0.34 QI:0|0.71|0.62|1|0.71|0.75|8|0|299; (*GB) gi|77999289|gb|ABB16991.1| (e_value=9e-160) unknown [Solanum tuberosum];; (*SWP) sp|O22768|UNE12_ARATH (e_value=2e-70) Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2;; (*TAIR) AT4G02590.2 (e_value=2e-71) | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:1137968-1140306 REVERSE LENGTH=310;; (*ITAG) Solyc09g083220.2.1 (e_value=6e-162) genomic_reference:SL2.40ch09 gene_region:64281487-64285536 transcript_region:SL2.40ch09:64281487..64285536+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00012728g0018.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|1|0.5|2|0|145; (*GB) gi|365818517|gb|AEX00347.1| (e_value=1e-78) IAA1 [Solanum lycopersicum];; (*SWP) sp|P33077|IAA4_ARATH (e_value=6e-53) Auxin-responsive protein IAA4 OS=Arabidopsis thaliana GN=IAA4 PE=1 SV=2;; (*TAIR) AT5G43700.1 (e_value=4e-54) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g083280.2.1 (e_value=2e-81) genomic_reference:SL2.40ch09 gene_region:64330790-64332575 transcript_region:SL2.40ch09:64330790..64332575- go_terms:GO:0017075 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0017075 NbS00055564g0006.1 protein AED:0.14 eAED:0.17 QI:0|0|0.5|1|0.66|0.25|4|0|747; (*GB) gi|148299083|gb|ABQ58079.1| (e_value=0.0) subtilisin-like protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc03g044150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12190436-12193226 transcript_region:SL2.40ch03:12190436..12193226- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00011889g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|439; (*GB) gi|302028361|gb|ADK91077.1| (e_value=0.0) delta-8 sphingolipid desaturase [Helianthus annuus];; (*SWP) sp|A4UVI1|FADS1_PAPAN (e_value=3e-45) Fatty acid desaturase 1 OS=Papio anubis GN=FADS1 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=0.0) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00011889g0003.1 protein AED:0.27 eAED:0.28 QI:0|0.71|0.72|1|0.95|0.90|22|464|765; (*GB) gi|225464350|ref|XP_002273318.1| (e_value=1e-127) PREDICTED: structural maintenance of chromosomes protein 3-like [Vitis vinifera];; (*SWP) sp|Q00737|SUDA_EMENI (e_value=5e-65) Chromosome segregation protein sudA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sudA PE=2 SV=3;; (*TAIR) AT2G27170.2 (e_value=8e-103) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=2e-141) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00014256g0005.1 protein AED:0.05 eAED:0.05 QI:0|0.25|0.2|1|0.5|0.8|5|0|631; (*GB) gi|255553821|ref|XP_002517951.1| (e_value=1e-101) protein with unknown function [Ricinus communis];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=5e-12) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT2G14830.1 (e_value=2e-47) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6365818 FORWARD LENGTH=454;; (*ITAG) Solyc07g054230.2.1 (e_value=2e-139) genomic_reference:SL2.40ch07 gene_region:59913582-59915470 transcript_region:SL2.40ch07:59913582..59915470- functional_description:"Unknown Protein (AHRD V1)"; NbS00014256g0009.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|168; (*GB) gi|46371868|gb|AAS90599.1| (e_value=2e-26) unknown pollen protein [Petunia integrifolia subsp. inflata];; (*ITAG) Solyc07g054250.2.1 (e_value=3e-16) genomic_reference:SL2.40ch07 gene_region:59918666-59921380 transcript_region:SL2.40ch07:59918666..59921380- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 *--- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00014256g0008.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|0|0|2|0|129; (*GB) gi|46371868|gb|AAS90599.1| (e_value=2e-26) unknown pollen protein [Petunia integrifolia subsp. inflata];; (*ITAG) Solyc07g054250.2.1 (e_value=1e-16) genomic_reference:SL2.40ch07 gene_region:59918666-59921380 transcript_region:SL2.40ch07:59918666..59921380- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 *--- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00014256g0010.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|0|0|2|0|60; (*GB) gi|46371868|gb|AAS90599.1| (e_value=5e-18) unknown pollen protein [Petunia integrifolia subsp. inflata];; (*ITAG) Solyc07g054250.2.1 (e_value=6e-14) genomic_reference:SL2.40ch07 gene_region:59918666-59921380 transcript_region:SL2.40ch07:59918666..59921380- functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 *--- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00045352g0002.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|2|0|224; (*GB) gi|224099387|ref|XP_002311465.1| (e_value=7e-43) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g009210.1.1 (e_value=4e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3352146-3353024 transcript_region:SL2.40ch05:3352146..3353024- functional_description:"At1g67050 (Fragment) (AHRD V1 *-*- B0FU30_ARATH)"; NbS00012834g0003.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|550; (*GB) gi|255764587|gb|ACU33853.1| (e_value=0.0) PPR1 protein [Capsicum annuum];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-120) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=4e-120) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00012834g0012.1 protein AED:0.25 eAED:0.25 QI:0|0.72|0.75|1|0.63|0.75|12|327|409; (*GB) gi|225429234|ref|XP_002264051.1| (e_value=0.0) PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9LHE5|TO401_ARATH (e_value=1e-150) Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3;; (*TAIR) AT3G20000.1 (e_value=1e-151) | Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309;; (*ITAG) Solyc06g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1692886-1704358 transcript_region:SL2.40ch06:1692886..1704358+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0015450 NbS00012834g0001.1 protein AED:0.29 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|22128587|gb|AAM52339.1| (e_value=8e-87) fertility restorer [Petunia x hybrida];; (*SWP) sp|Q0WKV3|PPR36_ARATH (e_value=2e-47) Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1;; (*TAIR) AT1G12300.1 (e_value=1e-48) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637;; (*ITAG) Solyc06g005220.2.1 (e_value=2e-99) genomic_reference:SL2.40ch06 gene_region:241201-243335 transcript_region:SL2.40ch06:241201..243335- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00012834g0002.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|208; (*GB) gi|255764587|gb|ACU33853.1| (e_value=3e-82) PPR1 protein [Capsicum annuum];; (*SWP) sp|Q9LQ16|PPR94_ARATH (e_value=8e-27) Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1;; (*TAIR) AT1G62910.1 (e_value=6e-28) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23299060-23300958 FORWARD LENGTH=632;; (*ITAG) Solyc06g007740.1.1 (e_value=5e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00024990g0013.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|443; (*GB) gi|225443837|ref|XP_002266982.1| (e_value=0.0) PREDICTED: phospholipase A1-IIgamma [Vitis vinifera];; (*SWP) sp|A2ZW16|PLA1_ORYSJ (e_value=1e-162) Phospholipase A1-II 1 OS=Oryza sativa subsp. japonica GN=Os01g0651100 PE=2 SV=2;; (*TAIR) AT4G18550.1 (e_value=3e-158) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10225006-10226862 REVERSE LENGTH=419;; (*ITAG) Solyc02g077110.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36747681-36749243 transcript_region:SL2.40ch02:36747681..36749243+ go_terms:GO:0006629 functional_description:"Lipase-like protein (AHRD V1 ***- Q8LF19_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00004764g0008.1 protein AED:0.13 eAED:0.13 QI:248|1|1|1|0.88|0.8|10|158|464; (*GB) gi|225452510|ref|XP_002274863.1| (e_value=0.0) PREDICTED: aldehyde dehydrogenase family 2 member B4, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SU63|AL2B4_ARATH (e_value=0.0) Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1;; (*TAIR) AT3G48000.1 (e_value=0.0) | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase 2B4 | chr3:17717082-17719843 REVERSE LENGTH=538;; (*ITAG) Solyc02g086970.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44113673-44117588 transcript_region:SL2.40ch02:44113673..44117588- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 **** Q84V96_LOTCO); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00004764g0009.1 protein AED:0.23 eAED:0.24 QI:677|0.8|0.83|1|0.6|0.5|6|345|330; (*GB) gi|225452512|ref|XP_002274893.1| (e_value=3e-160) PREDICTED: putative cyclic nucleotide-gated ion channel 18-like [Vitis vinifera];; (*SWP) sp|Q9LEQ3|CNG18_ARATH (e_value=8e-158) Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1;; (*TAIR) AT5G14870.1 (e_value=6e-159) | Symbols: CNGC18, ATCNGC18 | cyclic nucleotide-gated channel 18 | chr5:4808268-4810897 REVERSE LENGTH=706;; (*ITAG) Solyc03g114110.2.1 (e_value=2e-156) genomic_reference:SL2.40ch03 gene_region:58189455-58195300 transcript_region:SL2.40ch03:58189455..58195300- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00008042g0001.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|136; (*GB) gi|313586595|gb|ADR71308.1| (e_value=2e-28) hypothetical protein 30 [Hevea brasiliensis];; (*ITAG) Solyc04g077570.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:60128091-60128438 transcript_region:SL2.40ch04:60128091..60128438- functional_description:"Unknown Protein (AHRD V1)"; NbS00008042g0008.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.4|0.75|0.6|5|0|208; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-22) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094740.1.1 (e_value=6e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:77926836-77932243 transcript_region:SL2.40ch01:77926836..77932243- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00019175g0002.1 protein AED:0.02 eAED:0.02 QI:744|0.8|0.83|1|0.6|0.83|6|207|262; (*ITAG) Solyc01g096860.1.1 (e_value=9e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79614838-79618588 transcript_region:SL2.40ch01:79614838..79618588- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00019175g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.66|0.71|1|0.83|0.71|7|1026|476; (*GB) gi|255561266|ref|XP_002521644.1| (e_value=3e-130) hypothetical protein RCOM_1110800 [Ricinus communis];; (*SWP) sp|Q9ZVC9|FRS3_ARATH (e_value=9e-67) Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2;; (*TAIR) AT2G27110.3 (e_value=1e-68) | Symbols: FRS3 | FAR1-related sequence 3 | chr2:11576969-11580259 REVERSE LENGTH=706;; (*ITAG) Solyc01g096850.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:79605422-79610949 transcript_region:SL2.40ch01:79605422..79610949- go_terms:GO:0006310,GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 3 (AHRD V1 ***- FRS3_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0006310,GO:0008270 NbS00024869g0005.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.66|1|1|3|0|137; (*ITAG) Solyc03g044700.1.1 (e_value=7e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14330066-14330374 transcript_region:SL2.40ch03:14330066..14330374+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024869g0007.1 protein AED:0.09 eAED:0.10 QI:0|0.66|0.5|1|1|1|4|139|723; (*GB) gi|255543335|ref|XP_002512730.1| (e_value=0.0) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SAH2|PP137_ARATH (e_value=2e-161) Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1;; (*TAIR) AT1G80880.1 (e_value=2e-162) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30395194-30396921 REVERSE LENGTH=540;; (*ITAG) Solyc03g117570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60749224-60751786 transcript_region:SL2.40ch03:60749224..60751786- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00043825g0002.1 protein AED:0.08 eAED:0.08 QI:653|0|0.5|1|0|0.5|2|671|307; (*GB) gi|255576046|ref|XP_002528918.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g060730.2.1 (e_value=3e-31) genomic_reference:SL2.40ch06 gene_region:35136805-35141528 transcript_region:SL2.40ch06:35136805..35141528- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00002441g0007.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|155; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-16) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc12g044970.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00002441g0006.1 protein AED:0.37 eAED:0.44 QI:268|0.57|0.62|1|0.28|0.5|8|413|140; (*GB) gi|224059650|ref|XP_002299952.1| (e_value=1e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54HF6|LSM7_DICDI (e_value=6e-28) Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1;; (*TAIR) AT2G03870.1 (e_value=8e-49) | Symbols: | Small nuclear ribonucleoprotein family protein | chr2:1180306-1181256 FORWARD LENGTH=99;; (*ITAG) Solyc09g009640.2.1 (e_value=6e-55) genomic_reference:SL2.40ch09 gene_region:3051163-3053017 transcript_region:SL2.40ch09:3051163..3053017+ go_terms:GO:0005515 functional_description:"U6 snRNA-associated Sm-like protein LSm7 (AHRD V1 **-- C1BNB6_9MAXI); contains Interpro domain(s) IPR017132 U6 snRNA-associated Sm-like protein LSm7 "; GO:0005515 NbS00007358g0006.1 protein AED:0.38 eAED:0.38 QI:134|1|1|1|1|1|5|296|111; (*GB) gi|351725601|ref|NP_001237354.1| (e_value=1e-67) uncharacterized protein LOC100527017 [Glycine max];; (*SWP) sp|A4K526|CQ061_BUFBG (e_value=7e-22) UPF0451 protein C17orf61 homolog OS=Bufo bufo gargarizans PE=3 SV=1;; (*TAIR) AT2G04900.1 (e_value=3e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). | chr2:1722500-1723606 FORWARD LENGTH=128;; (*ITAG) Solyc07g047700.2.1 (e_value=9e-74) genomic_reference:SL2.40ch07 gene_region:56251359-56254694 transcript_region:SL2.40ch07:56251359..56254694+ functional_description:"UPF0382 membrane protein SE_0353 (AHRD V1 ***- C3KHX6_ANOFI); contains Interpro domain(s) IPR006696 Protein of unknown function DUF423 "; NbS00007358g0007.1 protein AED:0.04 eAED:0.04 QI:46|1|0.66|1|0.5|0.33|3|153|118; (*GB) gi|224131794|ref|XP_002321180.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|O65399|E131_ARATH (e_value=2e-25) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT5G35740.1 (e_value=8e-48) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr5:13910572-13911095 REVERSE LENGTH=119;; (*ITAG) Solyc07g047710.2.1 (e_value=5e-74) genomic_reference:SL2.40ch07 gene_region:56254903-56256162 transcript_region:SL2.40ch07:56254903..56256162- functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6UBU1_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00007358g0008.1 protein AED:0.13 eAED:0.17 QI:0|0|0|1|0|0|2|0|827; (*GB) gi|147772268|emb|CAN67351.1| (e_value=0.0) hypothetical protein VITISV_018091 [Vitis vinifera];; (*TAIR) AT2G05230.1 (e_value=0.0) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:1899818-1901938 REVERSE LENGTH=706;; (*ITAG) Solyc07g047690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56247177-56249543 transcript_region:SL2.40ch07:56247177..56249543+ go_terms:GO:0006457,GO:0031072 functional_description:"Curved DNA-binding protein (AHRD V1 *--- CBPA_SALCH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00001534g0005.1 protein AED:0.04 eAED:0.04 QI:371|1|1|1|1|1|2|341|328; (*GB) gi|225447687|ref|XP_002276552.1| (e_value=2e-172) PREDICTED: uncharacterized GPI-anchored protein At4g28100-like [Vitis vinifera];; (*SWP) sp|Q9SUC9|UGPI7_ARATH (e_value=6e-140) Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1;; (*TAIR) AT4G28100.1 (e_value=4e-141) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13965300-13966697 REVERSE LENGTH=304;; (*ITAG) Solyc07g054850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60355806-60357323 transcript_region:SL2.40ch07:60355806..60357323+ functional_description:"Uncharacterized GPI-anchored protein At4g28100 (AHRD V1 ***- UGPI7_ARATH)"; NbS00060745g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.6|0.8|0.75|1|5|0|182; (*GB) gi|82621188|gb|ABB86282.1| (e_value=2e-111) ubiquitin-conjugating protein-like [Solanum tuberosum];; (*SWP) sp|Q9FI61|UBC27_ARATH (e_value=7e-91) Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1;; (*TAIR) AT5G50870.1 (e_value=5e-92) | Symbols: UBC27 | ubiquitin-conjugating enzyme 27 | chr5:20699626-20700998 REVERSE LENGTH=192;; (*ITAG) Solyc06g072570.2.1 (e_value=8e-113) genomic_reference:SL2.40ch06 gene_region:41145493-41149587 transcript_region:SL2.40ch06:41145493..41149587+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 1 (AHRD V1 **** UBC1_SCHPO); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00060745g0006.1 protein AED:0.20 eAED:0.20 QI:248|0.81|0.82|0.94|0.68|0.70|17|428|382; (*GB) gi|296088722|emb|CBI38172.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q38799|ODPB_ARATH (e_value=0.0) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2;; (*TAIR) AT5G50850.1 (e_value=0.0) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc06g072580.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41150708-41158205 transcript_region:SL2.40ch06:41150708..41158205- go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00011571g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|1|1|3|0|317; (*GB) gi|224119092|ref|XP_002317983.1| (e_value=6e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|Q96330|FLS1_ARATH (e_value=4e-35) Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1;; (*TAIR) AT5G08640.2 (e_value=3e-36) | Symbols: FLS1 | flavonol synthase 1 | chr5:2804009-2805175 FORWARD LENGTH=336;; (*ITAG) Solyc06g069900.2.1 (e_value=6e-104) genomic_reference:SL2.40ch06 gene_region:39908807-39910622 transcript_region:SL2.40ch06:39908807..39910622+ go_terms:GO:0045544,GO:0045543 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B0F9M0_LILLO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544,GO:0045543 NbS00025586g0014.1 protein AED:0.02 eAED:0.04 QI:0|1|0|1|1|1|2|0|601; (*GB) gi|311063328|gb|ADP65810.1| (e_value=0.0) nicotine N-demethylase [Nicotiana sylvestris];; (*SWP) sp|O49394|C82C2_ARATH (e_value=1e-130) Cytochrome P450 82C2 OS=Arabidopsis thaliana GN=CYP82C2 PE=2 SV=2;; (*TAIR) AT4G31970.1 (e_value=1e-131) | Symbols: CYP82C2 | cytochrome P450, family 82, subfamily C, polypeptide 2 | chr4:15462408-15464358 FORWARD LENGTH=523;; (*ITAG) Solyc04g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00025586g0015.1 protein AED:0.08 eAED:0.16 QI:0|0|0|1|0.33|0.5|4|0|518; (*GB) gi|225430918|ref|XP_002270435.1| (e_value=3e-40) PREDICTED: protein KRI1 homolog [Vitis vinifera];; (*TAIR) AT3G24080.2 (e_value=2e-16) | Symbols: | KRR1 family protein | chr3:8695191-8697107 REVERSE LENGTH=630;; (*ITAG) Solyc07g064350.1.1 (e_value=1e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63761602-63763458 transcript_region:SL2.40ch07:63761602..63763458- functional_description:"Protein KRI1 homolog (AHRD V1 *--- KRI1_BOVIN); contains Interpro domain(s) IPR007851 KRR1 interacting protein 1, subgroup "; NbS00025586g0010.1 protein AED:0.90 eAED:0.90 QI:0|0|0|0.2|1|1|5|0|273 NbS00054506g0001.1 protein AED:0.18 eAED:0.40 QI:0|0|0|1|0|0|2|0|99; (*ITAG) Solyc00g020020.2.1 (e_value=5e-14) genomic_reference:SL2.40ch00 gene_region:11807384-11808467 transcript_region:SL2.40ch00:11807384..11808467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002007g0009.1 protein AED:0.11 eAED:0.11 QI:266|1|1|1|0.6|0.33|6|0|986; (*GB) gi|224125364|ref|XP_002329787.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RJH6|SMG7_MOUSE (e_value=2e-21) Protein SMG7 OS=Mus musculus GN=Smg7 PE=1 SV=1;; (*TAIR) AT1G28260.2 (e_value=3e-179) | Symbols: | Telomerase activating protein Est1 | chr1:9875776-9878782 REVERSE LENGTH=880;; (*ITAG) Solyc02g078020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37405063-37409811 transcript_region:SL2.40ch02:37405063..37409811- functional_description:"Binding protein (Fragment) (AHRD V1 **-- D7KCU4_ARALY); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00002007g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|0.75|1|1|4|0|225; (*GB) gi|12330698|gb|AAG52887.1|AF333386_1 (e_value=4e-70) beta-expansin-like protein [Nicotiana tabacum];; (*SWP) sp|Q7XT40|EXB15_ORYSJ (e_value=5e-68) Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2;; (*TAIR) AT1G65680.1 (e_value=2e-68) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273;; (*ITAG) Solyc07g049540.1.1 (e_value=4e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57160827-57162596 transcript_region:SL2.40ch07:57160827..57162596- go_terms:GO:0005576 functional_description:"Expansin-b5 (AHRD V1 ***- D7LRS2_ARALY); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like "; GO:0005576 NbS00002007g0120.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|1|1|2|54|153 NbS00002007g0125.1 protein AED:0.00 eAED:0.00 QI:36|1|1|1|1|1|2|317|297 NbS00002007g0118.1 protein AED:0.16 eAED:0.16 QI:50|1|1|1|0.68|0.76|17|215|748 NbS00002007g0117.1 protein AED:0.23 eAED:0.23 QI:217|0.85|0.80|0.95|0.85|0.85|21|207|896 NbS00002007g0105.1 protein AED:0.23 eAED:0.25 QI:1835|0.33|0.5|1|0.66|0.5|4|0|146 NbS00031927g0008.1 protein AED:0.39 eAED:0.47 QI:0|0.25|0.2|1|0.5|0.4|5|0|175; (*GB) gi|356567955|ref|XP_003552180.1| (e_value=1e-61) PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=5e-63) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT1G65660.1 (e_value=5e-58) | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting factor | chr1:24418295-24421231 REVERSE LENGTH=535;; (*ITAG) Solyc06g083890.2.1 (e_value=3e-73) genomic_reference:SL2.40ch06 gene_region:45471390-45477059 transcript_region:SL2.40ch06:45471390..45477059- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00031927g0007.1 protein AED:0.42 eAED:0.51 QI:0|0.5|0|1|0.5|0.66|3|0|123; (*GB) gi|225433138|ref|XP_002285201.1| (e_value=8e-58) PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Vitis vinifera];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=7e-59) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT1G65660.1 (e_value=2e-58) | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting factor | chr1:24418295-24421231 REVERSE LENGTH=535;; (*ITAG) Solyc09g072570.2.1 (e_value=4e-65) genomic_reference:SL2.40ch09 gene_region:60600116-60606656 transcript_region:SL2.40ch09:60600116..60606656- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00031927g0002.1 protein AED:0.57 eAED:0.69 QI:0|0|0|0.5|1|1|2|0|77 NbS00011619g0006.1 protein AED:0.05 eAED:0.05 QI:36|1|1|1|0.5|0.2|5|212|449; (*GB) gi|296084921|emb|CBI28330.3| (e_value=4e-154) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=6e-136) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:3739772-3743748 transcript_region:SL2.40ch01:3739772..3743748+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00017956g0021.1 protein AED:0.11 eAED:0.11 QI:170|1|1|1|0.85|0.75|8|395|141; (*GB) gi|2196548|gb|AAB61215.1| (e_value=1e-46) DNA-binding protein [Nicotiana tabacum];; (*SWP) sp|P40619|HMGL_IPONI (e_value=2e-34) HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1;; (*TAIR) AT1G20696.2 (e_value=2e-30) | Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147;; (*ITAG) Solyc02g082700.2.1 (e_value=1e-43) genomic_reference:SL2.40ch02 gene_region:40932829-40934370 transcript_region:SL2.40ch02:40932829..40934370- go_terms:GO:0003682,GO:0030527 functional_description:"High mobility group protein (AHRD V1 **-- O49948_SOLTU); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003682,GO:0030527 NbS00017956g0024.1 protein AED:0.22 eAED:0.23 QI:28|0.72|0.73|0.89|0.72|0.73|19|0|521; (*GB) gi|224081481|ref|XP_002306428.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5R921|SAC1_PONAB (e_value=8e-71) Phosphatidylinositide phosphatase SAC1 OS=Pongo abelii GN=SACM1L PE=2 SV=1;; (*TAIR) AT5G66020.1 (e_value=0.0) | Symbols: IBS2, ATSAC1B, ATSAC6, SACIB | Phosphoinositide phosphatase family protein | chr5:26401193-26404691 REVERSE LENGTH=593;; (*ITAG) Solyc00g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6556570-6569989 transcript_region:SL2.40ch00:6556570..6569989- go_terms:GO:0004439,GO:0043812 functional_description:"Phosphatidylinositol phosphate (PtdInsP) phosphatase involved in hydrolysis of PtdIns (AHRD V1 **** D6VWZ1_YEAST); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0004439,GO:0043812 NbS00017956g0027.1 protein AED:0.08 eAED:0.08 QI:0|0.86|0.73|0.95|1|0.95|23|233|1069; (*GB) gi|225431423|ref|XP_002280019.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262676 [Vitis vinifera];; (*TAIR) AT4G35560.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16881562-16886878 FORWARD LENGTH=1049;; (*ITAG) Solyc02g082690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40916781-40931957 transcript_region:SL2.40ch02:40916781..40931957+ functional_description:"Syntaxin binding protein 5 (Tomosyn) (AHRD V1 *--- Q14DD4_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00017956g0003.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|224084084|ref|XP_002307209.1| (e_value=1e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=3e-61) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=3e-62) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295;; (*ITAG) Solyc03g025560.2.1 (e_value=6e-61) genomic_reference:SL2.40ch03 gene_region:7340332-7342535 transcript_region:SL2.40ch03:7340332..7342535+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** UPPS_PYRFU); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00017956g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.25|1|1|4|0|314; (*GB) gi|20387099|dbj|BAB91250.1| (e_value=9e-98) cis-prenyltransferase [Hevea brasiliensis];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=2e-57) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=1e-58) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295;; (*ITAG) Solyc03g025560.2.1 (e_value=1e-44) genomic_reference:SL2.40ch03 gene_region:7340332-7342535 transcript_region:SL2.40ch03:7340332..7342535+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** UPPS_PYRFU); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00017956g0012.1 protein AED:0.46 eAED:0.47 QI:333|0.5|0.6|1|1|1|5|0|120; (*GB) gi|225431429|ref|XP_002280184.1| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100252414 [Vitis vinifera];; (*TAIR) AT4G16444.1 (e_value=1e-28) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9274791-9276056 REVERSE LENGTH=178;; (*ITAG) Solyc02g082710.2.1 (e_value=6e-65) genomic_reference:SL2.40ch02 gene_region:40937858-40942241 transcript_region:SL2.40ch02:40937858..40942241+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017956g0005.1 protein AED:0.71 eAED:0.71 QI:0|0.16|0|0.28|1|1|7|0|243; (*GB) gi|357484127|ref|XP_003612350.1| (e_value=9e-13) hypothetical protein MTR_5g024070 [Medicago truncatula]; NbS00059233g0002.1 protein AED:0.42 eAED:0.54 QI:24|0|0.33|1|0|0.33|3|0|189; (*GB) gi|297736649|emb|CBI25520.3| (e_value=1e-60) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G19985.1 (e_value=1e-45) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:10830542-10831711 REVERSE LENGTH=237;; (*ITAG) Solyc05g052170.2.1 (e_value=8e-83) genomic_reference:SL2.40ch05 gene_region:61604830-61607281 transcript_region:SL2.40ch05:61604830..61607281+ functional_description:"Acetyltransferase GNAT family protein (AHRD V1 ***- B6STV5_MAIZE)"; NbS00033609g0005.1 protein AED:0.21 eAED:0.21 QI:9|1|1|1|1|1|3|473|251; (*GB) gi|297733858|emb|CBI15105.3| (e_value=1e-126) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7Q2|PP124_ARATH (e_value=1e-103) Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1;; (*TAIR) AT1G74850.1 (e_value=8e-105) | Symbols: PTAC2 | plastid transcriptionally active 2 | chr1:28119237-28122314 REVERSE LENGTH=862;; (*ITAG) Solyc03g113630.2.1 (e_value=7e-163) genomic_reference:SL2.40ch03 gene_region:57759710-57764210 transcript_region:SL2.40ch03:57759710..57764210- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004828g0008.1 protein AED:0.29 eAED:0.29 QI:47|0.25|0.6|1|0.25|0.4|5|231|139 NbS00004828g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|9211012|dbj|BAA99575.1| (e_value=1e-21) DC2.15 like protein [Daucus carota];; (*SWP) sp|P14009|14KD_DAUCA (e_value=2e-22) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=2e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc08g079200.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59989262-59989669 transcript_region:SL2.40ch08:59989262..59989669- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 **-- B6U3L7_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00004828g0105.1 protein AED:0.10 eAED:0.15 QI:0|0|0.25|1|0.33|0.25|4|0|236 NbS00004828g0106.1 protein AED:0.37 eAED:0.39 QI:0|0.5|0.33|1|0|0|3|0|152 NbS00004382g0012.1 protein AED:0.16 eAED:0.17 QI:252|0.66|0.5|0.75|0.33|0.25|4|0|493; (*GB) gi|147783406|emb|CAN75218.1| (e_value=0.0) hypothetical protein VITISV_003519 [Vitis vinifera];; (*SWP) sp|Q9VVE5|MSIR6_DROME (e_value=3e-53) RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=2 SV=3;; (*TAIR) AT3G07810.1 (e_value=9e-143) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2492875-2495052 FORWARD LENGTH=494;; (*ITAG) Solyc10g006050.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:793641-797405 transcript_region:SL2.40ch10:793641..797405+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A3 (AHRD V1 *--- B6TGB9_MAIZE); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00004382g0015.1 protein AED:0.25 eAED:0.25 QI:234|0.71|0.8|1|0.28|0.26|15|419|490; (*GB) gi|357459871|ref|XP_003600216.1| (e_value=0.0) Sodium/hydrogen exchanger [Medicago truncatula];; (*SWP) sp|Q8S397|NHX4_ARATH (e_value=0.0) Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2;; (*TAIR) AT5G55470.1 (e_value=0.0) | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen) exchanger 3 | chr5:22469553-22472585 REVERSE LENGTH=529;; (*ITAG) Solyc10g006080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:805529-809760 transcript_region:SL2.40ch10:805529..809760+ go_terms:GO:0015081 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** D7MKH9_ARALY); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015081 NbS00004382g0017.1 protein AED:0.28 eAED:0.28 QI:0|0.25|0.4|1|0.25|0.2|5|386|185; (*GB) gi|82400150|gb|ABB72814.1| (e_value=3e-77) putative 40S ribosomal protein S8-like protein [Solanum tuberosum];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=5e-70) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=7e-71) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc07g065170.2.1 (e_value=1e-81) genomic_reference:SL2.40ch07 gene_region:64272755-64275084 transcript_region:SL2.40ch07:64272755..64275084- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- B4FGG1_MAIZE); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00004382g0014.1 protein AED:0.16 eAED:0.31 QI:0|0|0.25|1|0.33|0.25|4|0|307; (*GB) gi|156070780|gb|ABU45193.1| (e_value=2e-43) unknown [Petunia integrifolia subsp. inflata];; (*ITAG) Solyc08g078600.2.1 (e_value=7e-47) genomic_reference:SL2.40ch08 gene_region:59537321-59545380 transcript_region:SL2.40ch08:59537321..59545380- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase III subunit RPC5-like protein (AHRD V1 *-*- D0NBY8_PHYIN); contains Interpro domain(s) IPR006886 Sin-like protein conserved region "; GO:0005634 NbS00016606g0007.1 protein AED:0.42 eAED:0.45 QI:24|0.75|0.6|1|0.75|1|5|0|141; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=1e-26) MADS-box protein 15 [Petunia x hybrida];; (*ITAG) Solyc05g015720.1.1 (e_value=9e-59) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:11820296-11823497 transcript_region:SL2.40ch05:11820296..11823497- go_terms:GO:0003700 functional_description:"MADS box transcription factor-like protein (AHRD V1 **** Q9FJQ7_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700 NbS00016606g0005.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|107; (*GB) gi|147805338|emb|CAN67450.1| (e_value=2e-29) hypothetical protein VITISV_031401 [Vitis vinifera];; (*SWP) sp|Q8RU31|MAD21_ORYSJ (e_value=2e-26) MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1;; (*TAIR) AT4G09960.2 (e_value=2e-26) | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236713-6239409 REVERSE LENGTH=216;; (*ITAG) Solyc05g015730.1.1 (e_value=5e-38) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:11842331-11842573 transcript_region:SL2.40ch05:11842331..11842573- go_terms:GO:0005634 functional_description:"MADS-box transcription factor 1 (AHRD V1 ***- D3U2G9_ORYSA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00023538g0008.1 protein AED:0.19 eAED:0.18 QI:169|1|0.83|1|1|1|6|554|352; (*GB) gi|255562647|ref|XP_002522329.1| (e_value=4e-110) Upstream activation factor subunit UAF30, putative [Ricinus communis];; (*SWP) sp|Q08747|UAF30_YEAST (e_value=8e-22) Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1;; (*TAIR) AT1G49520.1 (e_value=3e-80) | Symbols: | SWIB complex BAF60b domain-containing protein | chr1:18329736-18331691 FORWARD LENGTH=372;; (*ITAG) Solyc01g108290.2.1 (e_value=8e-170) genomic_reference:SL2.40ch01 gene_region:87405735-87410001 transcript_region:SL2.40ch01:87405735..87410001+ go_terms:GO:0005515,GO:0003701 functional_description:"SWIB/MDM2 domain containing protein (AHRD V1 ***- B6SZA4_MAIZE); contains Interpro domain(s) IPR019835 SWIB domain "; GO:0005515,GO:0003701 NbS00023538g0010.1 protein AED:0.71 eAED:0.98 QI:0|0|0|0.4|0.75|0.8|5|0|253 NbS00023538g0009.1 protein AED:0.23 eAED:0.28 QI:0|0|0|1|0|0|3|0|236; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-39) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00010230g0003.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|356516350|ref|XP_003526858.1| (e_value=9e-27) PREDICTED: pectinesterase inhibitor-like [Glycine max];; (*SWP) sp|O49603|CVIF2_ARATH (e_value=2e-20) Cell wall / vacuolar inhibitor of fructosidase 2 OS=Arabidopsis thaliana GN=C/VIF2 PE=1 SV=1;; (*TAIR) AT5G64620.1 (e_value=1e-21) | Symbols: C/VIF2, ATC/VIF2 | cell wall / vacuolar inhibitor of fructosidase 2 | chr5:25831875-25832417 FORWARD LENGTH=180;; (*ITAG) Solyc11g005820.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:662989-663561 transcript_region:SL2.40ch11:662989..663561- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q674_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00042620g0003.1 protein AED:0.23 eAED:0.23 QI:714|1|1|1|1|1|7|282|368; (*GB) gi|225438547|ref|XP_002279722.1| (e_value=8e-111) PREDICTED: programmed cell death protein 2-like [Vitis vinifera];; (*SWP) sp|P87156|TSR4_SCHPO (e_value=8e-11) Probable 20S rRNA accumulation protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.15 PE=2 SV=1;; (*TAIR) AT5G64830.1 (e_value=2e-99) | Symbols: | programmed cell death 2 C-terminal domain-containing protein | chr5:25914911-25916512 REVERSE LENGTH=380;; (*ITAG) Solyc04g051780.2.1 (e_value=3e-163) genomic_reference:SL2.40ch04 gene_region:50221103-50225867 transcript_region:SL2.40ch04:50221103..50225867- go_terms:GO:0005737 functional_description:"Programmed cell death protein 2 (AHRD V1 *-*- C1BKK3_OSMMO); contains Interpro domain(s) IPR007320 Programmed cell death protein 2, C-terminal "; GO:0005737 NbS00024807g0001.1 protein AED:0.12 eAED:0.12 QI:137|1|1|1|1|1|7|291|286; (*GB) gi|224133230|ref|XP_002327992.1| (e_value=6e-171) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LDW8|GLO2D_ARATH (e_value=1e-161) Probable hydroxyacylglutathione hydrolase 2, chloroplast OS=Arabidopsis thaliana GN=GLX2-4 PE=2 SV=1;; (*TAIR) AT1G06130.1 (e_value=1e-162) | Symbols: GLX2-4 | glyoxalase 2-4 | chr1:1858034-1860640 REVERSE LENGTH=331;; (*ITAG) Solyc06g053310.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32541547-32550340 transcript_region:SL2.40ch06:32541547..32550340+ go_terms:GO:0004416 functional_description:"Hydroxyacylglutathione hydrolase 2 (AHRD V1 **** B6T9Z9_MAIZE); contains Interpro domain(s) IPR017782 Hydroxyacylglutathione hydrolase "; GO:0004416 NbS00024807g0004.1 protein AED:0.13 eAED:0.13 QI:139|0.5|0.33|0.66|0.5|0.66|3|0|130; (*ITAG) Solyc03g044840.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00006677g0016.1 protein AED:0.08 eAED:0.08 QI:0|1|0.71|1|1|0.85|7|0|243; (*GB) gi|224115922|ref|XP_002317160.1| (e_value=2e-153) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41141|PFPB_RICCO (e_value=4e-153) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1;; (*TAIR) AT1G12000.1 (e_value=2e-151) | Symbols: | Phosphofructokinase family protein | chr1:4050159-4053727 REVERSE LENGTH=566;; (*ITAG) Solyc07g049280.2.1 (e_value=2e-169) genomic_reference:SL2.40ch07 gene_region:56858846-56866428 transcript_region:SL2.40ch07:56858846..56866428- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D0TAW1_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00006677g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.8|0.66|0.83|0.6|0.5|6|217|440; (*GB) gi|225444462|ref|XP_002272066.1| (e_value=1e-117) PREDICTED: UBA and UBX domain-containing protein At4g15410 [Vitis vinifera];; (*SWP) sp|Q7Y175|UBAX1_ARATH (e_value=3e-98) UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1;; (*TAIR) AT4G04210.1 (e_value=4e-105) | Symbols: PUX4 | plant UBX domain containing protein 4 | chr4:2030391-2031670 FORWARD LENGTH=303;; (*ITAG) Solyc07g049260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56851098-56854907 transcript_region:SL2.40ch07:56851098..56854907- go_terms:GO:0043130 functional_description:"UBX domain-containing protein 1 (AHRD V1 **-- C8V7E9_EMENI); contains Interpro domain(s) IPR012989 SEP "; GO:0043130 NbS00006677g0009.1 protein AED:0.17 eAED:0.17 QI:170|1|1|1|0.75|0.6|5|333|138; (*GB) gi|255568699|ref|XP_002525321.1| (e_value=1e-55) glycine-rich RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=5e-22) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT3G08000.1 (e_value=2e-45) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:2555034-2555829 REVERSE LENGTH=143;; (*ITAG) Solyc07g049270.2.1 (e_value=1e-71) genomic_reference:SL2.40ch07 gene_region:56856850-56858387 transcript_region:SL2.40ch07:56856850..56858387- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00006677g0015.1 protein AED:0.15 eAED:0.20 QI:0|1|0.71|1|0.83|0.85|7|0|275; (*GB) gi|224115922|ref|XP_002317160.1| (e_value=3e-140) predicted protein [Populus trichocarpa];; (*SWP) sp|Q41141|PFPB_RICCO (e_value=7e-136) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Ricinus communis GN=PFP-BETA PE=3 SV=1;; (*TAIR) AT1G12000.1 (e_value=1e-130) | Symbols: | Phosphofructokinase family protein | chr1:4050159-4053727 REVERSE LENGTH=566;; (*ITAG) Solyc07g049280.2.1 (e_value=5e-164) genomic_reference:SL2.40ch07 gene_region:56858846-56866428 transcript_region:SL2.40ch07:56858846..56866428- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D0TAW1_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00011372g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|129; (*GB) gi|225441008|ref|XP_002283685.1| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100254632 [Vitis vinifera];; (*TAIR) AT3G10020.1 (e_value=9e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149;; (*ITAG) Solyc09g008970.1.1 (e_value=2e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:2346372-2346782 transcript_region:SL2.40ch09:2346372..2346782+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011372g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|123; (*GB) gi|356503773|ref|XP_003520678.1| (e_value=7e-24) PREDICTED: uncharacterized protein LOC100785774 [Glycine max];; (*TAIR) AT3G10020.1 (e_value=4e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3091225-3091674 REVERSE LENGTH=149;; (*ITAG) Solyc09g008980.1.1 (e_value=5e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2348996-2351852 transcript_region:SL2.40ch09:2348996..2351852+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012730g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|0|0|2|0|79; (*GB) gi|225441207|ref|XP_002270931.1| (e_value=3e-44) PREDICTED: zinc finger protein 593-like [Vitis vinifera];; (*TAIR) AT2G36930.1 (e_value=3e-36) | Symbols: | zinc finger (C2H2 type) family protein | chr2:15510002-15511347 REVERSE LENGTH=198;; (*ITAG) Solyc09g008230.2.1 (e_value=4e-49) genomic_reference:SL2.40ch09 gene_region:1681078-1684790 transcript_region:SL2.40ch09:1681078..1684790+ go_terms:GO:0003714 functional_description:"Zinc finger protein 593 (Fragment) (AHRD V1 **-- B2L5L2_XENBO); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0003714 NbS00012730g0009.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.42|1|0.66|0.71|7|0|376; (*GB) gi|255562204|ref|XP_002522110.1| (e_value=0.0) sterol regulatory element-binding protein site 2 protease, putative [Ricinus communis];; (*TAIR) AT1G17870.1 (e_value=0.0) | Symbols: ATEGY3, EGY3 | ethylene-dependent gravitropism-deficient and yellow-green-like 3 | chr1:6150036-6152185 REVERSE LENGTH=573;; (*ITAG) Solyc01g106820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86331805-86335838 transcript_region:SL2.40ch01:86331805..86335838+ functional_description:"Peptidase M50 family (AHRD V1 ***- B6UET0_MAIZE)"; NbS00037972g0002.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|96 NbS00037972g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0.5|1|0|0.5|2|599|282; (*GB) gi|350536895|ref|NP_001234270.1| (e_value=6e-164) GRX1 protein [Solanum lycopersicum];; (*SWP) sp|Q8H7F6|GRS16_ARATH (e_value=1e-122) Monothiol glutaredoxin-S16, chloroplastic OS=Arabidopsis thaliana GN=GRXS16 PE=2 SV=2;; (*TAIR) AT2G38270.1 (e_value=1e-123) | Symbols: CXIP2, ATGRX2 | CAX-interacting protein 2 | chr2:16031347-16033054 REVERSE LENGTH=293;; (*ITAG) Solyc09g005620.2.1 (e_value=7e-168) genomic_reference:SL2.40ch09 gene_region:426125-428965 transcript_region:SL2.40ch09:426125..428965- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 *-*- D7G070_ECTSI); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0045454 NbS00022027g0003.1 protein AED:0.28 eAED:0.29 QI:0|0.7|0.63|0.90|0.8|0.90|11|348|333; (*GB) gi|62867578|emb|CAI84654.1| (e_value=7e-121) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT3G14450.1 (e_value=1e-105) | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601 FORWARD LENGTH=327;; (*ITAG) Solyc07g056590.2.1 (e_value=4e-162) genomic_reference:SL2.40ch07 gene_region:61723085-61730619 transcript_region:SL2.40ch07:61723085..61730619+ go_terms:GO:0005515,GO:0003723 functional_description:"Polyadenylate-binding protein 1 (AHRD V1 *-** B0WMK0_CULQU); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515,GO:0003723 NbS00060845g0003.1 protein AED:0.13 eAED:0.13 QI:702|1|1|1|0.25|0.6|5|295|168; (*GB) gi|56544478|gb|AAV92904.1| (e_value=6e-110) Avr9/Cf-9 rapidly elicited protein 246, partial [Nicotiana tabacum];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=8e-50) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT1G26360.1 (e_value=3e-76) | Symbols: ATMES13, MES13 | methyl esterase 13 | chr1:9119021-9121203 REVERSE LENGTH=444;; (*ITAG) Solyc05g012180.2.1 (e_value=9e-87) genomic_reference:SL2.40ch05 gene_region:5446238-5449535 transcript_region:SL2.40ch05:5446238..5449535- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LP51_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00021857g0003.1 protein AED:0.09 eAED:0.09 QI:116|0.71|0.62|1|0.71|0.62|8|368|543; (*GB) gi|225445031|ref|XP_002280190.1| (e_value=0.0) PREDICTED: gamma-glutamyltranspeptidase 1 [Vitis vinifera];; (*SWP) sp|Q60928|GGT1_MOUSE (e_value=2e-80) Gamma-glutamyltranspeptidase 1 OS=Mus musculus GN=Ggt1 PE=1 SV=1;; (*TAIR) AT4G29210.2 (e_value=3e-138) | Symbols: GGT4 | gamma-glutamyl transpeptidase 4 | chr4:14400990-14402752 FORWARD LENGTH=512;; (*ITAG) Solyc12g008640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2017171-2020585 transcript_region:SL2.40ch12:2017171..2020585- go_terms:GO:0003840 functional_description:"Gamma-glutamyltransferase-like protein (AHRD V1 ***- Q9M0G0_ARATH); contains Interpro domain(s) IPR000101 Gamma-glutamyltranspeptidase "; GO:0003840 NbS00026366g0004.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.33|0.5|0.33|3|0|92; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=2e-20) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=1e-16) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=1e-17) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=2e-25) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00027126g0005.1 protein AED:0.16 eAED:0.67 QI:0|0|0|1|0|0|4|0|246; (*ITAG) Solyc06g066120.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00020284g0009.1 protein AED:0.00 eAED:0.00 QI:46|1|1|1|1|1|2|219|170; (*GB) gi|225464902|ref|XP_002274217.1| (e_value=7e-56) PREDICTED: uncharacterized protein LOC100258720 [Vitis vinifera];; (*TAIR) AT2G27385.3 (e_value=3e-27) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:11716697-11717285 REVERSE LENGTH=162;; (*ITAG) Solyc06g074260.2.1 (e_value=6e-71) genomic_reference:SL2.40ch06 gene_region:42295490-42302447 transcript_region:SL2.40ch06:42295490..42302447- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 *-*- Q9FMQ8_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00027668g0007.1 protein AED:0.12 eAED:0.12 QI:931|1|1|1|1|1|2|369|321; (*GB) gi|255573704|ref|XP_002527773.1| (e_value=7e-103) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZU90|SKI28_ARATH (e_value=9e-71) F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1;; (*TAIR) AT2G01620.1 (e_value=7e-72) | Symbols: MEE11 | RNI-like superfamily protein | chr2:278204-279226 FORWARD LENGTH=292;; (*ITAG) Solyc01g005450.2.1 (e_value=2e-160) genomic_reference:SL2.40ch01 gene_region:314777-317493 transcript_region:SL2.40ch01:314777..317493- go_terms:GO:0005515 functional_description:"F-box protein family-like protein (AHRD V1 ***- Q7EY67_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00027668g0006.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|0.5|0.66|3|0|459; (*GB) gi|147856981|emb|CAN79664.1| (e_value=1e-171) hypothetical protein VITISV_031014 [Vitis vinifera];; (*SWP) sp|Q9BZV1|UBXN6_HUMAN (e_value=9e-21) UBX domain-containing protein 6 OS=Homo sapiens GN=UBXN6 PE=1 SV=1;; (*TAIR) AT2G01650.1 (e_value=1e-162) | Symbols: PUX2 | plant UBX domain-containing protein 2 | chr2:284851-286394 REVERSE LENGTH=458;; (*ITAG) Solyc01g005430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:299064-303517 transcript_region:SL2.40ch01:299064..303517+ go_terms:GO:0003676,GO:0008270 functional_description:"UBX domain protein 6 (AHRD V1 ***- Q7SXA8_DANRE); contains Interpro domain(s) IPR018997 PUB domain "; GO:0003676,GO:0008270 NbC23529093g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|1|1|-1|1|1|0|79; (*GB) gi|3036948|dbj|BAA25392.1| (e_value=5e-52) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27495|CB24_TOBAC (e_value=2e-53) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT1G29920.1 (e_value=7e-52) | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-binding protein 2 | chr1:10475089-10475892 REVERSE LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=1e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00014907g0003.1 protein AED:0.17 eAED:0.17 QI:348|1|0.83|1|0.6|0.83|6|465|398; (*GB) gi|359474536|ref|XP_002278005.2| (e_value=2e-135) PREDICTED: probable transcription factor KAN2-like [Vitis vinifera];; (*SWP) sp|Q9C616|KAN2_ARATH (e_value=2e-65) Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1;; (*TAIR) AT1G32240.1 (e_value=1e-66) | Symbols: KAN2 | Homeodomain-like superfamily protein | chr1:11625882-11630355 REVERSE LENGTH=388;; (*ITAG) Solyc06g066340.2.1 (e_value=8e-136) genomic_reference:SL2.40ch06 gene_region:38018439-38024018 transcript_region:SL2.40ch06:38018439..38024018+ go_terms:GO:0045449 functional_description:"Myb family transcription factor-like protein (AHRD V1 *--- Q84UP8_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00019605g0016.1 protein AED:0.37 eAED:0.39 QI:0|1|0|1|1|1|2|0|220; (*GB) gi|225456583|ref|XP_002265665.1| (e_value=3e-18) PREDICTED: uncharacterized protein LOC100253543 [Vitis vinifera];; (*TAIR) AT3G02170.1 (e_value=2e-14) | Symbols: LNG2 | longifolia2 | chr3:396208-399393 REVERSE LENGTH=905;; (*ITAG) Solyc02g089050.2.1 (e_value=2e-56) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00019605g0019.1 protein AED:0.35 eAED:0.41 QI:0|0|0|1|0.5|0|3|0|221; (*GB) gi|225451725|ref|XP_002276947.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera];; (*ITAG) Solyc02g089050.2.1 (e_value=3e-45) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00019605g0006.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|97; (*ITAG) Solyc02g089050.2.1 (e_value=1e-15) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00019605g0007.1 protein AED:0.42 eAED:0.65 QI:0|-1|0|1|-1|1|1|0|119; (*GB) gi|225451725|ref|XP_002276947.1| (e_value=7e-13) PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera];; (*ITAG) Solyc02g089050.2.1 (e_value=2e-13) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00019605g0022.1 protein AED:0.07 eAED:0.07 QI:0|0.33|0|0.75|0.66|0.75|4|0|470; (*GB) gi|147803535|emb|CAN77667.1| (e_value=1e-21) hypothetical protein VITISV_038105 [Vitis vinifera];; (*ITAG) Solyc03g059470.1.1 (e_value=6e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:27167843-27169033 transcript_region:SL2.40ch03:27167843..27169033- functional_description:"F1C9.9 protein (AHRD V1 ***- Q9SGB0_ARATH)"; NbS00019605g0009.1 protein AED:0.09 eAED:0.11 QI:0|0|0|0.75|1|1|4|0|1082; (*GB) gi|339790481|dbj|BAK52397.1| (e_value=0.0) leucine rich repeat receptor protein kinase 2 [Solanum pennellii];; (*SWP) sp|Q9S7I6|RPK2_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1;; (*TAIR) AT3G02130.1 (e_value=0.0) | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein kinase 2 | chr3:380726-384181 FORWARD LENGTH=1151;; (*ITAG) Solyc03g059490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:27445978-27449355 transcript_region:SL2.40ch03:27445978..27449355+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00019605g0021.1 protein AED:0.16 eAED:0.22 QI:0|0.25|0.2|1|0|0|5|3285|313; (*GB) gi|225451729|ref|XP_002277032.1| (e_value=2e-55) PREDICTED: uncharacterized protein LOC100246447 [Vitis vinifera];; (*TAIR) AT3G02160.1 (e_value=3e-28) | Symbols: | Bromodomain transcription factor | chr3:394615-395808 FORWARD LENGTH=397;; (*ITAG) Solyc09g008150.1.1 (e_value=4e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1613203-1614324 transcript_region:SL2.40ch09:1613203..1614324- go_terms:GO:0003677 functional_description:"Transcription initiation factor TFIID subunit 8 (AHRD V1 *--- C0H851_SALSA); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; GO:0003677 NbS00033220g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|0.66|0.5|4|1052|500; (*GB) gi|255536799|ref|XP_002509466.1| (e_value=0.0) protein-tyrosine kinase, putative [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=7e-113) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G58950.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525;; (*ITAG) Solyc02g078140.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37494938-37497613 transcript_region:SL2.40ch02:37494938..37497613- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q39886_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00033220g0010.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|310; (*GB) gi|255536801|ref|XP_002509467.1| (e_value=4e-109) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G20670.1 (e_value=6e-81) | Symbols: | Protein of unknown function (DUF506) | chr2:8912163-8913472 REVERSE LENGTH=294;; (*ITAG) Solyc02g078150.2.1 (e_value=1e-158) genomic_reference:SL2.40ch02 gene_region:37508378-37509790 transcript_region:SL2.40ch02:37508378..37509790+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00021509g0004.1 protein AED:0.22 eAED:0.22 QI:728|0.94|0.89|0.94|0.61|0.52|19|258|716; (*GB) gi|61696673|gb|AAX53097.1| (e_value=0.0) DNA mismatch repair protein [Solanum lycopersicum];; (*SWP) sp|A8YTH9|MUTS_LACH4 (e_value=4e-27) DNA mismatch repair protein MutS OS=Lactobacillus helveticus (strain DPC 4571) GN=mutS PE=3 SV=1;; (*TAIR) AT3G24320.1 (e_value=0.0) | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118;; (*ITAG) Solyc09g090870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65605318-65639030 transcript_region:SL2.40ch09:65605318..65639030- go_terms:GO:0003684 functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-** C8PCK3_9LACO); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0003684 NbS00021509g0012.1 protein AED:0.22 eAED:0.23 QI:0|0.83|0.71|1|0.83|0.85|7|0|303; (*GB) gi|358249088|ref|NP_001239735.1| (e_value=6e-103) uncharacterized protein LOC100795925 [Glycine max];; (*TAIR) AT3G24315.1 (e_value=2e-87) | Symbols: AtSec20 | Sec20 family protein | chr3:8820599-8822445 REVERSE LENGTH=293;; (*ITAG) Solyc09g090860.2.1 (e_value=5e-145) genomic_reference:SL2.40ch09 gene_region:65598396-65603568 transcript_region:SL2.40ch09:65598396..65603568- functional_description:"Sec20 family protein (AHRD V1 ***- D7L520_ARALY); contains Interpro domain(s) IPR005606 Sec20 "; NbS00021509g0010.1 protein AED:0.12 eAED:0.30 QI:0|0|0|1|0|0|4|0|210; (*ITAG) Solyc09g090850.2.1 (e_value=9e-40) genomic_reference:SL2.40ch09 gene_region:65597148-65598544 transcript_region:SL2.40ch09:65597148..65598544+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- A8IXV1_BRACM); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00018212g0001.1 protein AED:0.30 eAED:0.30 QI:79|0.87|0.88|1|1|1|9|334|363; (*GB) gi|14280354|gb|AAK57535.1| (e_value=9e-164) branched-chain amino acid aminotransferase [Capsicum annuum];; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=2e-145) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.2 (e_value=2e-146) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288255-3290164 FORWARD LENGTH=388;; (*ITAG) Solyc12g088220.1.1 (e_value=9e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62104278-62110185 transcript_region:SL2.40ch12:62104278..62110185+ go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00009796g0003.1 protein AED:0.36 eAED:0.36 QI:0|0.66|0.75|1|0.33|0.25|4|155|105; (*GB) gi|224135025|ref|XP_002327548.1| (e_value=8e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55080.1 (e_value=2e-16) | Symbols: MED9 | MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). | chr1:20553121-20554174 REVERSE LENGTH=244;; (*ITAG) Solyc02g069520.2.1 (e_value=3e-26) genomic_reference:SL2.40ch02 gene_region:33969549-33971170 transcript_region:SL2.40ch02:33969549..33971170+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009796g0001.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|224; (*GB) gi|209954709|dbj|BAG80545.1| (e_value=1e-65) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9ZVY5|U75B2_ARATH (e_value=2e-29) UDP-glycosyltransferase 75B2 OS=Arabidopsis thaliana GN=UGT75B2 PE=2 SV=1;; (*TAIR) AT1G05530.1 (e_value=2e-30) | Symbols: UGT75B2, UGT2 | UDP-glucosyl transferase 75B2 | chr1:1636496-1637863 REVERSE LENGTH=455;; (*ITAG) Solyc12g098600.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64390524-64391915 transcript_region:SL2.40ch12:64390524..64391915+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00017728g0005.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|1|1|4|4|601; (*GB) gi|255568832|ref|XP_002525387.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G23790.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF936) | chr1:8410099-8411917 FORWARD LENGTH=518;; (*ITAG) Solyc05g005580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:415971-418540 transcript_region:SL2.40ch05:415971..418540+ functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- C1PIB6_ARATH); contains Interpro domain(s) IPR010341 Protein of unknown function DUF936, plant "; NbS00017728g0008.1 protein AED:0.26 eAED:0.26 QI:29|0.8|0.54|1|0.8|0.72|11|370|409; (*GB) gi|296086557|emb|CBI32146.3| (e_value=5e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|A0LQM1|RLMN_SYNFM (e_value=7e-69) Ribosomal RNA large subunit methyltransferase N OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmN PE=3 SV=1;; (*TAIR) AT1G60230.1 (e_value=3e-163) | Symbols: | Radical SAM superfamily protein | chr1:22212223-22214346 REVERSE LENGTH=458;; (*ITAG) Solyc05g005590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:419694-425339 transcript_region:SL2.40ch05:419694..425339+ go_terms:GO:0003824 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- C6E0H5_GEOSM); contains Interpro domain(s) IPR004383 Conserved hypothetical protein CHP00048 "; GO:0003824 NbS00006819g0001.1 protein AED:0.11 eAED:0.13 QI:0|0.66|0.5|1|1|1|4|0|237; (*GB) gi|359495767|ref|XP_003635085.1| (e_value=1e-90) PREDICTED: thioredoxin-like protein HCF164, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q7Y0D4|TR164_ORYSJ (e_value=2e-78) Thioredoxin-like protein HCF164, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0767500 PE=2 SV=1;; (*TAIR) AT4G37200.1 (e_value=2e-79) | Symbols: HCF164 | Thioredoxin superfamily protein | chr4:17509836-17511230 REVERSE LENGTH=261;; (*ITAG) Solyc07g064940.2.1 (e_value=8e-133) genomic_reference:SL2.40ch07 gene_region:64121920-64124847 transcript_region:SL2.40ch07:64121920..64124847- go_terms:GO:0016671 functional_description:"Thioredoxin family protein (AHRD V1 *-*- Q1EPD8_MUSAC); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0016671 NbS00006819g0013.1 protein AED:0.13 eAED:0.14 QI:48|0.88|0.7|1|0.88|0.8|10|104|388; (*GB) gi|255554719|ref|XP_002518397.1| (e_value=0.0) phosphatidate cytidylyltransferase, putative [Ricinus communis];; (*SWP) sp|O04940|CDS1_SOLTU (e_value=0.0) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT4G26770.1 (e_value=0.0) | Symbols: | Phosphatidate cytidylyltransferase family protein | chr4:13482580-13484697 FORWARD LENGTH=471;; (*ITAG) Solyc07g064960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64131970-64135830 transcript_region:SL2.40ch07:64131970..64135830- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B8A9S4_ORYSI); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00006819g0019.1 protein AED:0.60 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|92 NbS00006819g0022.1 protein AED:0.19 eAED:0.19 QI:184|1|1|1|1|1|6|422|299; (*GB) gi|3851638|gb|AAC72386.1| (e_value=2e-148) chaperone GrpE type 1 [Nicotiana tabacum];; (*SWP) sp|Q3SW78|GRPE_NITWN (e_value=1e-30) Protein grpE OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=grpE PE=3 SV=1;; (*TAIR) AT4G26780.1 (e_value=4e-77) | Symbols: AR192 | Co-chaperone GrpE family protein | chr4:13485066-13486560 REVERSE LENGTH=327;; (*ITAG) Solyc07g064930.2.1 (e_value=9e-116) genomic_reference:SL2.40ch07 gene_region:64116770-64121604 transcript_region:SL2.40ch07:64116770..64121604+ go_terms:GO:0005524,GO:0005507 functional_description:"Protein grpE (AHRD V1 *-*- Q1QRU3_NITHX); contains Interpro domain(s) IPR000740 GrpE nucleotide exchange factor "; GO:0005524,GO:0005507 NbS00006819g0015.1 protein AED:0.22 eAED:0.22 QI:97|0.90|0.83|1|1|1|12|0|516; (*GB) gi|225460855|ref|XP_002277545.1| (e_value=0.0) PREDICTED: trigger factor isoform 1 [Vitis vinifera];; (*SWP) sp|Q8S9L5|TIG_ARATH (e_value=0.0) Trigger factor-like protein TIG OS=Arabidopsis thaliana GN=TIG PE=2 SV=1;; (*TAIR) AT5G55220.1 (e_value=0.0) | Symbols: | trigger factor type chaperone family protein | chr5:22397677-22400678 FORWARD LENGTH=547;; (*ITAG) Solyc07g064950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64125602-64131741 transcript_region:SL2.40ch07:64125602..64131741+ go_terms:GO:0015031,GO:0006457 functional_description:"Trigger factor-like protein (AHRD V1 ***- Q9FLP1_ARATH); contains Interpro domain(s) IPR005215 Trigger factor "; GO:0015031,GO:0006457 NbS00006819g0017.1 protein AED:0.18 eAED:0.26 QI:0|0|0|1|0|0|2|0|231; (*GB) gi|255538432|ref|XP_002510281.1| (e_value=3e-48) Protein Z, putative [Ricinus communis];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=6e-41) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=5e-42) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079440.2.1 (e_value=5e-60) genomic_reference:SL2.40ch04 gene_region:61536285-61539279 transcript_region:SL2.40ch04:61536285..61539279- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00004333g0013.1 protein AED:0.01 eAED:0.01 QI:118|1|0.75|1|1|1|4|0|187; (*GB) gi|357470733|ref|XP_003605651.1| (e_value=6e-82) SnRK1-interacting protein [Medicago truncatula];; (*TAIR) AT1G71310.1 (e_value=9e-80) | Symbols: | cobalt ion binding | chr1:26878717-26879844 REVERSE LENGTH=176;; (*ITAG) Solyc08g005060.2.1 (e_value=1e-104) genomic_reference:SL2.40ch08 gene_region:48135-51527 transcript_region:SL2.40ch08:48135..51527- go_terms:GO:0050897 functional_description:"SnRK1-interacting protein 1 (AHRD V1 ***- Q9LEH5_HORVU)"; GO:0050897 NbS00004333g0017.1 protein AED:0.39 eAED:0.41 QI:0|0.6|0.5|0.83|0.8|0.83|6|0|301; (*GB) gi|147798190|emb|CAN73746.1| (e_value=1e-104) hypothetical protein VITISV_041364 [Vitis vinifera];; (*SWP) sp|Q9I8B3|RB24B_XENLA (e_value=1e-30) RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1;; (*TAIR) AT1G33470.2 (e_value=1e-64) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:12144632-12146040 FORWARD LENGTH=244;; (*ITAG) Solyc11g044470.1.1 (e_value=2e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:35784022-35789351 transcript_region:SL2.40ch11:35784022..35789351+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein A2/B1-like (AHRD V1 *--- Q5ZDX8_ORYSJ); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00004333g0002.1 protein AED:0.26 eAED:0.26 QI:305|0.94|0.94|1|1|1|19|0|678; (*GB) gi|225423672|ref|XP_002276491.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 52 homolog [Vitis vinifera];; (*SWP) sp|Q8C754|VPS52_MOUSE (e_value=2e-129) Vacuolar protein sorting-associated protein 52 homolog OS=Mus musculus GN=Vps52 PE=2 SV=1;; (*TAIR) AT1G71270.1 (e_value=0.0) | Symbols: POK, TTD8, ATVPS52 | Vps52 / Sac2 family | chr1:26863736-26869817 FORWARD LENGTH=707;; (*ITAG) Solyc02g094090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49292983-49310119 transcript_region:SL2.40ch02:49292983..49310119- functional_description:"Vacuolar protein sorting 52 (AHRD V1 **-- Q5TJF1_CANFA); contains Interpro domain(s) IPR007258 Vps52/Sac2 "; NbS00004333g0004.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|316; (*GB) gi|255546666|ref|XP_002514392.1| (e_value=5e-175) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G38160.1 (e_value=6e-154) | Symbols: pde191 | Mitochondrial transcription termination factor family protein | chr4:17902412-17903413 FORWARD LENGTH=333;; (*ITAG) Solyc11g044360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35622072-35623025 transcript_region:SL2.40ch11:35622072..35623025- functional_description:"At4g38160-like protein (Fragment) (AHRD V1 *--- C0JEI1_9BRAS); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00007942g0011.1 protein AED:0.27 eAED:0.27 QI:533|0.88|0.9|1|0.55|0.6|10|304|613; (*GB) gi|350537183|ref|NP_001234795.1| (e_value=0.0) inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum];; (*SWP) sp|Q84MA2|IP5P1_ARATH (e_value=7e-151) Type I inositol 1,4,5-trisphosphate 5-phosphatase 1 OS=Arabidopsis thaliana GN=IP5P1 PE=1 SV=2;; (*TAIR) AT1G71710.1 (e_value=4e-165) | Symbols: | DNAse I-like superfamily protein | chr1:26973796-26976774 REVERSE LENGTH=664;; (*ITAG) Solyc00g009110.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8818874-8827274 transcript_region:SL2.40ch00:8818874..8827274+ go_terms:GO:0004437 functional_description:"Inositol-1 4 5-trisphosphate 5-Phosphatase-like protein (AHRD V1 *-*- Q9M1W5_ARATH); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00007942g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|124359796|gb|ABD33026.2| (e_value=2e-22) Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=2e-14) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=2e-15) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc04g047790.1.1 (e_value=6e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:36844973-36845329 transcript_region:SL2.40ch04:36844973..36845329+ functional_description:"FAR1 Zinc finger SWIM-type Iron hydrogenase (AHRD V1 **-- Q1SWK4_MEDTR)"; NbS00015028g0005.1 protein AED:0.08 eAED:0.08 QI:188|0.85|0.87|1|1|1|8|1708|492; (*GB) gi|148469859|gb|ABQ65859.1| (e_value=0.0) serine carboxypeptidase III [Nicotiana tabacum];; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=0.0) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2;; (*TAIR) AT3G45010.1 (e_value=0.0) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc06g017860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:10756897-10760347 transcript_region:SL2.40ch06:10756897..10760347- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q2Z1Y2_PRUMU); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00015028g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0|1|0.33|0.75|4|0|257; (*GB) gi|350534470|ref|NP_001234654.1| (e_value=5e-42) bHLH transcriptional regulator [Solanum lycopersicum];; (*SWP) sp|Q0V7X4|FIT_ARATH (e_value=3e-20) Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1;; (*TAIR) AT2G28160.1 (e_value=2e-21) | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ATFIT1 | FER-like regulator of iron uptake | chr2:12004713-12005908 FORWARD LENGTH=318;; (*ITAG) Solyc06g051550.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:31547113-31549026 transcript_region:SL2.40ch06:31547113..31549026- go_terms:GO:0003700,GO:0042802 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00002787g0102.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|184 NbS00002787g0116.1 protein AED:0.29 eAED:0.29 QI:155|0.86|0.75|0.87|0.66|0.75|16|0|647 NbS00002787g0119.1 protein AED:0.06 eAED:0.06 QI:415|0.5|0.6|0.8|1|1|5|0|236 NbS00002787g0103.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|177 NbS00009501g0001.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|353; (*ITAG) Solyc01g096250.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:79096053-79097276 transcript_region:SL2.40ch01:79096053..79097276+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009501g0005.1 protein AED:0.23 eAED:0.24 QI:0|0.66|0.5|1|1|1|4|0|274; (*GB) gi|356573253|ref|XP_003554777.1| (e_value=2e-108) PREDICTED: uncharacterized protein LOC100798854 [Glycine max];; (*TAIR) AT3G61870.1 (e_value=7e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr3:22902702-22903895 FORWARD LENGTH=272;; (*ITAG) Solyc01g096240.2.1 (e_value=2e-122) genomic_reference:SL2.40ch01 gene_region:79091598-79095176 transcript_region:SL2.40ch01:79091598..79095176+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q01FV7_OSTTA)"; NbS00012394g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|237|285; (*GB) gi|37147908|gb|AAQ88401.1| (e_value=1e-92) HD-ZIP [Capsicum annuum];; (*SWP) sp|P46897|ATHB7_ARATH (e_value=6e-36) Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2;; (*TAIR) AT2G46680.1 (e_value=5e-37) | Symbols: ATHB-7, ATHB7, HB-7 | homeobox 7 | chr2:19165777-19166773 REVERSE LENGTH=258;; (*ITAG) Solyc03g082550.2.1 (e_value=6e-94) genomic_reference:SL2.40ch03 gene_region:46039117-46040348 transcript_region:SL2.40ch03:46039117..46040348+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox leucine zipper protein (AHRD V1 ***- B8YIB0_MIRJA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0005634,GO:0006355,GO:0045449 NbS00012394g0012.1 protein AED:0.32 eAED:0.32 QI:122|0.66|0.42|1|0.5|0.57|7|0|312; (*GB) gi|225455264|ref|XP_002273477.1| (e_value=4e-175) PREDICTED: uncharacterized oxidoreductase At1g06690, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=7e-52) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT5G53580.1 (e_value=2e-162) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr5:21765215-21766919 REVERSE LENGTH=365;; (*ITAG) Solyc03g082560.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46042023-46044930 transcript_region:SL2.40ch03:46042023..46044930+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase-like protein (AHRD V1 ***- Q56Y42_ARATH); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0055114 NbS00001714g0002.1 protein AED:0.45 eAED:0.46 QI:0|0|0|0.33|1|1|3|0|96; (*GB) gi|57013908|ref|YP_173381.1| (e_value=5e-27) hypothetical protein NitaMp035 [Nicotiana tabacum]; NbS00001714g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007045g0014.1 protein AED:0.07 eAED:0.09 QI:28|0.6|0.5|1|0.6|0.5|6|889|1026; (*GB) gi|225432728|ref|XP_002282919.1| (e_value=0.0) PREDICTED: probable RNA helicase SDE3 [Vitis vinifera];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=0.0) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=0.0) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00007045g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|308; (*GB) gi|351727671|ref|NP_001235889.1| (e_value=3e-36) uncharacterized protein LOC100500289 precursor [Glycine max];; (*TAIR) AT3G22600.1 (e_value=5e-29) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr3:8006711-8007397 REVERSE LENGTH=170;; (*ITAG) Solyc06g054070.2.1 (e_value=1e-42) genomic_reference:SL2.40ch06 gene_region:33408127-33408933 transcript_region:SL2.40ch06:33408127..33408933+ functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- C6T196_SOYBN); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00007045g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0.5|1|1|1|4|424|403; (*GB) gi|356538299|ref|XP_003537641.1| (e_value=1e-179) PREDICTED: parafibromin-like [Glycine max];; (*SWP) sp|Q5ZLM0|CDC73_CHICK (e_value=4e-23) Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1;; (*TAIR) AT3G22590.1 (e_value=1e-172) | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO PARAFIBROMIN | chr3:8003999-8005452 FORWARD LENGTH=415;; (*ITAG) Solyc06g054080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33411739-33413560 transcript_region:SL2.40ch06:33411739..33413560- functional_description:"RNA polymerase II accessory factor Cdc73 family (AHRD V1 **-- B6JZW2_SCHJY); contains Interpro domain(s) IPR007852 RNA polymerase II accessory factor, Cdc73 "; NbS00007045g0015.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|0.5|0.33|0.5|4|0|84 NbS00007045g0006.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|101 NbS00006572g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|1|1|3|0|534; (*GB) gi|255556942|ref|XP_002519504.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|O82811|NRT21_ARATH (e_value=0.0) High-affinity nitrate transporter 2.1 OS=Arabidopsis thaliana GN=NRT2.1 PE=1 SV=1;; (*TAIR) AT1G08090.1 (e_value=0.0) | Symbols: ATNRT2:1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1, NRT2:1 | nitrate transporter 2:1 | chr1:2524139-2525920 FORWARD LENGTH=530;; (*ITAG) Solyc11g069750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51440145-51442059 transcript_region:SL2.40ch11:51440145..51442059+ go_terms:GO:0055085 functional_description:"Nitrate transporter (AHRD V1 ***- A5JUX2_9ROSI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00006572g0010.1 protein AED:0.13 eAED:0.23 QI:0|0|0|0.75|0.33|0.25|4|0|259; (*ITAG) Solyc01g111480.1.1 (e_value=6e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006801g0003.1 protein AED:0.64 eAED:0.64 QI:0|0|0|0.5|1|1|2|0|154 NbS00015904g0005.1 protein AED:0.06 eAED:0.08 QI:72|0.87|0.77|1|0.75|0.55|9|765|917; (*GB) gi|359479413|ref|XP_002272391.2| (e_value=4e-149) PREDICTED: uncharacterized protein LOC100243144 [Vitis vinifera];; (*TAIR) AT2G27950.1 (e_value=7e-68) | Symbols: | Ring/U-Box superfamily protein | chr2:11899422-11903171 REVERSE LENGTH=839;; (*ITAG) Solyc11g066500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49341937-49347457 transcript_region:SL2.40ch11:49341937..49347457+ go_terms:GO:0008270 functional_description:"Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00015904g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|144; (*GB) gi|225436426|ref|XP_002273630.1| (e_value=7e-27) PREDICTED: RING-H2 finger protein ATL57-like [Vitis vinifera];; (*SWP) sp|Q9SJJ7|ATL57_ARATH (e_value=3e-21) RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1;; (*TAIR) AT2G27940.1 (e_value=2e-22) | Symbols: | RING/U-box superfamily protein | chr2:11897963-11898742 FORWARD LENGTH=237;; (*ITAG) Solyc11g066510.1.1 (e_value=5e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49351144-49352875 transcript_region:SL2.40ch11:49351144..49352875- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 ***- D9ZHD8_HYPPE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00016945g0004.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.25|1|1|4|0|104 NbS00016945g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|529; (*GB) gi|30387023|emb|CAD89798.1| (e_value=0.0) high affinity nitrate transporter protein [Nicotiana tabacum];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=0.0) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=0.0) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc06g074990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42880175-42882962 transcript_region:SL2.40ch06:42880175..42882962- go_terms:GO:0015112 functional_description:"Nitrate transporter (AHRD V1 **** O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015112 NbS00030175g0008.1 protein AED:0.01 eAED:0.01 QI:181|1|1|1|1|1|2|134|125; (*GB) gi|351727609|ref|NP_001235375.1| (e_value=1e-50) uncharacterized protein LOC100305948 precursor [Glycine max];; (*SWP) sp|P00303|BABL_CUCSA (e_value=4e-46) Basic blue protein OS=Cucumis sativus PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=1e-44) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104400.2.1 (e_value=5e-59) genomic_reference:SL2.40ch01 gene_region:84535674-84538317 transcript_region:SL2.40ch01:84535674..84538317- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00030175g0007.1 protein AED:0.26 eAED:0.26 QI:63|1|1|1|0.83|0.84|13|75|450; (*GB) gi|359486084|ref|XP_002273501.2| (e_value=0.0) PREDICTED: sterol 3-beta-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q751Z4|ATG26_ASHGO (e_value=3e-18) Sterol 3-beta-glucosyltransferase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG26 PE=3 SV=1;; (*TAIR) AT5G24750.1 (e_value=2e-180) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:8490821-8494536 REVERSE LENGTH=520;; (*ITAG) Solyc01g104410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84540080-84547356 transcript_region:SL2.40ch01:84540080..84547356- go_terms:GO:0005622 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 *-*- A4X1A3_SALTO)"; GO:0005622 NbS00042840g0003.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0.33|3|0|206; (*ITAG) Solyc09g031720.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:23594401-23597212 transcript_region:SL2.40ch09:23594401..23597212+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00041677g0009.1 protein AED:0.17 eAED:0.17 QI:0|0.81|0.66|0.91|0.72|0.66|12|0|957; (*GB) gi|224134424|ref|XP_002327402.1| (e_value=2e-149) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15780.1 (e_value=2e-117) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). | chr1:5430446-5435921 REVERSE LENGTH=1335;; (*ITAG) Solyc04g009500.2.1 (e_value=1e-142) genomic_reference:SL2.40ch04 gene_region:2915852-2927412 transcript_region:SL2.40ch04:2915852..2927412+ go_terms:GO:0006355 functional_description:"CTV.22 (AHRD V1 *-*- Q8H6Q7_PONTR); contains Interpro domain(s) IPR003101 Coactivator CBP, KIX "; GO:0006355 NbS00028751g0007.1 protein AED:0.26 eAED:0.49 QI:0|0|0|1|0|0|2|0|70 NbS00028751g0113.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|0|0|3|171|265 NbS00028751g0107.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|90 NbS00028751g0103.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|205 NbS00035044g0003.1 protein AED:0.33 eAED:0.72 QI:0|0|0|1|0|0|2|0|186; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00035044g0002.1 protein AED:0.32 eAED:0.38 QI:0|0|0|1|0|0|3|0|185; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-36) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g050450.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:46388272-46390482 transcript_region:SL2.40ch04:46388272..46390482- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00012761g0013.1 protein AED:0.14 eAED:0.15 QI:235|0.83|0.94|1|0.55|0.63|19|193|921; (*GB) gi|225439103|ref|XP_002266206.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT5G01950.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:365040-369532 REVERSE LENGTH=951;; (*ITAG) Solyc10g074890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57914822-57922140 transcript_region:SL2.40ch10:57914822..57922140- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00012761g0012.1 protein AED:0.15 eAED:0.15 QI:220|0.94|0.89|1|0.5|0.73|19|239|890; (*GB) gi|359480978|ref|XP_003632548.1| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g37450-like [Vitis vinifera];; (*SWP) sp|C0LGD7|Y1684_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2;; (*TAIR) AT1G06840.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:2097854-2103208 REVERSE LENGTH=953;; (*ITAG) Solyc10g074900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57929897-57941645 transcript_region:SL2.40ch10:57929897..57941645- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012761g0016.1 protein AED:0.29 eAED:0.29 QI:268|1|0.66|1|0.6|0.66|6|0|199; (*GB) gi|359481036|ref|XP_002266361.2| (e_value=2e-76) PREDICTED: acetyltransferase NSI-like [Vitis vinifera];; (*SWP) sp|Q5KQI6|NSI_ORYSJ (e_value=2e-56) Probable acetyltransferase NSI OS=Oryza sativa subsp. japonica GN=NSI PE=2 SV=1;; (*TAIR) AT1G32070.3 (e_value=3e-58) | Symbols: ATNSI, NSI | nuclear shuttle interacting | chr1:11534851-11536289 REVERSE LENGTH=257;; (*ITAG) Solyc10g074910.1.1 (e_value=7e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57945511-57956476 transcript_region:SL2.40ch10:57945511..57956476- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 *-*- Q31BX2_PROM9); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00012761g0015.1 protein AED:0.35 eAED:0.35 QI:0|1|0.85|1|0.66|0.85|7|0|285; (*GB) gi|40645104|dbj|BAD06470.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9ZVI3|QKIL3_ARATH (e_value=7e-146) KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1;; (*TAIR) AT2G38610.2 (e_value=5e-147) | Symbols: | RNA-binding KH domain-containing protein | chr2:16147552-16149638 REVERSE LENGTH=286;; (*ITAG) Solyc10g074870.1.1 (e_value=9e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57902176-57910126 transcript_region:SL2.40ch10:57902176..57910126+ go_terms:GO:0003723 functional_description:"KH domain containing RNA binding signal transduction associated 1 (AHRD V1 *--- Q29RQ2_BOVIN); contains Interpro domain(s) IPR004087 K Homology "; GO:0003723 NbS00012761g0019.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0|0|2|0|389; (*GB) gi|118483602|gb|ABK93697.1| (e_value=3e-133) unknown [Populus trichocarpa];; (*TAIR) AT3G08640.1 (e_value=5e-121) | Symbols: | Protein of unknown function (DUF3411) | chr3:2622992-2624005 FORWARD LENGTH=337;; (*ITAG) Solyc10g074880.1.1 (e_value=1e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57912990-57914069 transcript_region:SL2.40ch10:57912990..57914069+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q015C3_OSTTA)"; NbS00056959g0005.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|88; (*GB) gi|290487016|gb|ADD29892.1| (e_value=1e-37) ribosomal protein S7 [Ehretia acuminata];; (*SWP) sp|P62732|RR7_TOBAC (e_value=4e-39) 30S ribosomal protein S7, chloroplastic OS=Nicotiana tabacum GN=rps7-A PE=3 SV=1;; (*ITAG) ATCG00900.1 (e_value=2e-39) | Symbols: RPS7.1, RPS7 | Ribosomal protein S7p/S5e family protein | chrC:97478-97945 REVERSE LENGTH=155;; (*ITAG) Solyc01g007670.2.1 (e_value=3e-40) genomic_reference:SL2.40ch01 gene_region:1893908-1894685 transcript_region:SL2.40ch01:1893908..1894685- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S7 chloroplastic (AHRD V1 ***- D3WBE1_9BORA); contains Interpro domain(s) IPR005717 Ribosomal protein S7, bacterial-type "; GO:0005840,GO:0015935 NbS00017992g0002.1 protein AED:0.28 eAED:0.28 QI:0|1|0.6|1|0.75|0.6|5|0|234; (*GB) gi|29468343|gb|AAO85511.1| (e_value=6e-145) CSN8 [Nicotiana benthamiana];; (*SWP) sp|P43255|CSN8_ARATH (e_value=3e-98) COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8 PE=1 SV=1;; (*TAIR) AT4G14110.1 (e_value=2e-99) | Symbols: COP9, CSN8, FUS7, EMB143 | COP9 signalosome, subunit CSN8 | chr4:8133049-8134867 REVERSE LENGTH=197;; (*ITAG) Solyc01g104600.2.1 (e_value=3e-131) genomic_reference:SL2.40ch01 gene_region:84809272-84813588 transcript_region:SL2.40ch01:84809272..84813588+ go_terms:GO:0005515,GO:0004222 functional_description:"COP9 signalosome complex subunit 8 (AHRD V1 ***- B6SQ52_MAIZE); contains Interpro domain(s) IPR019280 COP9 signalosome, subunit CSN8 "; GO:0005515,GO:0004222 NbS00017992g0009.1 protein AED:0.19 eAED:0.23 QI:24|0.33|0.25|1|0.33|0.5|4|242|320; (*GB) gi|297738233|emb|CBI27434.3| (e_value=7e-46) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=1e-25) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=9e-27) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011540.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00057753g0004.1 protein AED:0.32 eAED:0.32 QI:0|0.90|0.83|1|0.81|0.66|12|879|319; (*GB) gi|225437209|ref|XP_002281655.1| (e_value=4e-159) PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Vitis vinifera];; (*SWP) sp|O22769|NDUV2_ARATH (e_value=5e-155) NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g02580 PE=1 SV=3;; (*TAIR) AT4G02580.1 (e_value=4e-156) | Symbols: | NADH-ubiquinone oxidoreductase 24 kDa subunit, putative | chr4:1134586-1136906 FORWARD LENGTH=255;; (*ITAG) Solyc09g065830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59698544-59706751 transcript_region:SL2.40ch09:59698544..59706751- go_terms:GO:0008137,GO:0008270 functional_description:"NADH ubiquinone oxidoreductase subunit (AHRD V1 **** Q6V9B3_CHLRE); contains Interpro domain(s) IPR002023 NADH:ubiquinone oxidoreductase, 24 kDa subunit "; GO:0008137,GO:0008270 NbS00025813g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|183; (*GB) gi|224081999|ref|XP_002306550.1| (e_value=3e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT1G02070.1 (e_value=7e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:370445-370947 REVERSE LENGTH=131;; (*ITAG) Solyc04g076010.2.1 (e_value=2e-80) genomic_reference:SL2.40ch04 gene_region:58535755-58536879 transcript_region:SL2.40ch04:58535755..58536879- functional_description:"Zinc ion binding protein (AHRD V1 *-*- D7LRR6_ARALY)"; NbS00048964g0003.1 protein AED:0.25 eAED:0.26 QI:142|0.83|0.78|0.94|0.88|0.94|19|0|927; (*GB) gi|225444321|ref|XP_002264138.1| (e_value=0.0) PREDICTED: leucyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q2S415|SYL_SALRD (e_value=0.0) Leucine--tRNA ligase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=leuS PE=3 SV=1;; (*TAIR) AT4G04350.1 (e_value=0.0) | Symbols: EMB2369 | tRNA synthetase class I (I, L, M and V) family protein | chr4:2128129-2133030 FORWARD LENGTH=973;; (*ITAG) Solyc02g080990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39628580-39635976 transcript_region:SL2.40ch02:39628580..39635976- go_terms:GO:0003729,GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** C6IZI6_9BACL); contains Interpro domain(s) IPR002302 Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial "; GO:0003729,GO:0004823 NbS00058016g0006.1 protein AED:0.22 eAED:0.22 QI:331|1|1|1|0.66|0.5|10|307|747; (*GB) gi|57281695|dbj|BAD86587.1| (e_value=0.0) sphingosine kinase [Lotus japonicus];; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=0.0) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1 PE=1 SV=1;; (*TAIR) AT5G23450.2 (e_value=0.0) | Symbols: ATLCBK1, LCBK1 | long-chain base (LCB) kinase 1 | chr5:7905041-7908960 REVERSE LENGTH=763;; (*ITAG) Solyc01g096500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79343169-79351925 transcript_region:SL2.40ch01:79343169..79351925- go_terms:GO:0017050 functional_description:"D-erythro-sphingosine kinase (AHRD V1 *-** D7MES6_ARALY); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00013607g0021.1 protein AED:0.21 eAED:0.21 QI:1325|1|1|1|0.54|0.58|12|347|177; (*GB) gi|225460839|ref|XP_002276969.1| (e_value=4e-48) PREDICTED: transcription initiation factor TFIID subunit 6-like [Vitis vinifera];; (*TAIR) AT1G04950.3 (e_value=2e-25) | Symbols: TAFII59, TAF6, ATTAF6 | TATA BOX ASSOCIATED FACTOR II 59 | chr1:1403606-1407184 REVERSE LENGTH=549;; (*ITAG) Solyc10g006100.2.1 (e_value=2e-89) genomic_reference:SL2.40ch10 gene_region:837357-845861 transcript_region:SL2.40ch10:837357..845861- go_terms:GO:0005515,GO:0003700 functional_description:"Transcription initiation factor TFIID subunit 6 (AHRD V1 **** B6K6E4_SCHJY); contains Interpro domain(s) IPR011442 Protein of unknown function DUF1546 "; GO:0005515,GO:0003700 NbS00013607g0025.1 protein AED:0.18 eAED:0.18 QI:1318|1|1|1|1|0.9|10|416|316; (*GB) gi|357459871|ref|XP_003600216.1| (e_value=8e-141) Sodium/hydrogen exchanger [Medicago truncatula];; (*SWP) sp|Q8S397|NHX4_ARATH (e_value=2e-134) Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2;; (*TAIR) AT5G55470.1 (e_value=2e-135) | Symbols: ATNHX3, NHX3 | Na+/H+ (sodium hydrogen) exchanger 3 | chr5:22469553-22472585 REVERSE LENGTH=529;; (*ITAG) Solyc10g006080.1.1 (e_value=3e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:805529-809760 transcript_region:SL2.40ch10:805529..809760+ go_terms:GO:0015081 functional_description:"Sodium/hydrogen exchanger (AHRD V1 **** D7MKH9_ARALY); contains Interpro domain(s) IPR018407 Na+/H+ exchanger, isoforms 1-4, conserved region "; GO:0015081 NbS00013607g0023.1 protein AED:0.21 eAED:0.21 QI:0|0.94|0.89|1|0.72|0.73|19|0|1290; (*GB) gi|359494102|ref|XP_002276879.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100243584 [Vitis vinifera];; (*SWP) sp|Q55FD6|Y8158_DICDI (e_value=1e-16) PHD finger-containing protein DDB_G0268158 OS=Dictyostelium discoideum GN=DDB_G0268158 PE=4 SV=1;; (*TAIR) AT5G55390.2 (e_value=0.0) | Symbols: EDM2 | ENHANCED DOWNY MILDEW 2 | chr5:22448152-22454414 REVERSE LENGTH=1297;; (*ITAG) Solyc10g006090.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:814243-825414 transcript_region:SL2.40ch10:814243..825414+ go_terms:GO:0003700 functional_description:"Genomic DNA chromosome 5 P1 clone MTE17 (AHRD V1 **-- Q9FJ71_ARATH); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003700 NbS00058478g0001.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|15233937|ref|NP_195570.1| (e_value=2e-72) farnesylated protein 6 [Arabidopsis thaliana];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=5e-74) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT4G38580.1 (e_value=4e-75) | Symbols: ATFP6, HIPP26, FP6 | farnesylated protein 6 | chr4:18034596-18035693 FORWARD LENGTH=153;; (*ITAG) Solyc01g111600.2.1 (e_value=5e-82) genomic_reference:SL2.40ch01 gene_region:89577522-89580464 transcript_region:SL2.40ch01:89577522..89580464- go_terms:GO:0005515 functional_description:"Metal ion binding protein (AHRD V1 **-* D7MN12_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005515 NbS00009003g0109.1 protein AED:0.28 eAED:0.29 QI:0|0|0|1|0.25|0.2|5|0|221 NbS00009003g0108.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|76 NbS00039992g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|447; (*GB) gi|225423977|ref|XP_002282578.1| (e_value=1e-155) PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera];; (*SWP) sp|Q8RWD0|COL16_ARATH (e_value=1e-96) Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2;; (*TAIR) AT1G25440.1 (e_value=1e-97) | Symbols: | B-box type zinc finger protein with CCT domain | chr1:8933939-8935284 REVERSE LENGTH=417;; (*ITAG) Solyc05g009310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3442971-3445112 transcript_region:SL2.40ch05:3442971..3445112+ go_terms:GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 16 (AHRD V1 **-- B6TEI1_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0003700 NbS00039992g0002.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|68 NbS00010318g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.75|0.70|1|1|1|17|331|666; (*GB) gi|350539429|ref|NP_001234393.1| (e_value=0.0) tousled-like protein [Solanum lycopersicum];; (*SWP) sp|Q39238|TSL_ARATH (e_value=0.0) Serine/threonine-protein kinase TOUSLED OS=Arabidopsis thaliana GN=TOUSLED PE=1 SV=1;; (*TAIR) AT5G20930.1 (e_value=0.0) | Symbols: TSL | Protein kinase superfamily protein | chr5:7098213-7102970 FORWARD LENGTH=688;; (*ITAG) Solyc11g071680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52162376-52174213 transcript_region:SL2.40ch11:52162376..52174213- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- D0LX30_HALO1); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006163g0007.1 protein AED:0.15 eAED:0.15 QI:162|1|1|1|0.75|0.6|5|257|72; (*GB) gi|255582654|ref|XP_002532106.1| (e_value=7e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G01350.1 (e_value=2e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:145865-146911 REVERSE LENGTH=72; NbS00006163g0006.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|2|0|232; (*GB) gi|225456209|ref|XP_002282887.1| (e_value=3e-51) PREDICTED: wall-associated receptor kinase 2-like isoform 3 [Vitis vinifera];; (*SWP) sp|Q9C9L5|WAKLH_ARATH (e_value=4e-44) Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1;; (*TAIR) AT1G69730.1 (e_value=3e-45) | Symbols: | Wall-associated kinase family protein | chr1:26228703-26231339 REVERSE LENGTH=792;; (*ITAG) Solyc09g014720.1.1 (e_value=1e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6773605-6777110 transcript_region:SL2.40ch09:6773605..6777110- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00004582g0112.1 protein AED:0.07 eAED:0.07 QI:1285|1|1|1|0.75|0.66|9|395|396 NbS00004582g0113.1 protein AED:0.11 eAED:0.11 QI:10|1|0.8|1|1|1|5|568|731 NbS00004582g0118.1 protein AED:0.23 eAED:0.58 QI:0|0|0|1|0|0.33|3|0|96 NbC25888885g0004.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|0.5|0|1|2|0|79 NbS00018073g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|225453080|ref|XP_002270702.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera];; (*SWP) sp|P48724|IF5_PHAVU (e_value=4e-174) Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G77840.1 (e_value=2e-163) | Symbols: | Translation initiation factor IF2/IF5 | chr1:29269087-29270400 FORWARD LENGTH=437;; (*ITAG) Solyc03g034430.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:10670693-10672021 transcript_region:SL2.40ch03:10670693..10672021+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00006985g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc05g042170.1.1 (e_value=7e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:54236198-54236482 transcript_region:SL2.40ch05:54236198..54236482- functional_description:"Unknown Protein (AHRD V1)"; NbS00006985g0003.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc05g042170.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:54236198-54236482 transcript_region:SL2.40ch05:54236198..54236482- functional_description:"Unknown Protein (AHRD V1)"; NbC26197159g0004.1 protein AED:0.07 eAED:0.07 QI:34|1|1|1|0.33|0.25|4|0|120; (*GB) gi|255547740|ref|XP_002514927.1| (e_value=9e-58) protein with unknown function [Ricinus communis];; (*SWP) sp|Q18600|YTV2_CAEEL (e_value=2e-23) Uncharacterized zinc metalloprotease C44B7.11 OS=Caenorhabditis elegans GN=C44B7.11 PE=1 SV=4;; (*TAIR) AT1G67420.2 (e_value=6e-56) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922;; (*ITAG) Solyc12g035490.1.1 (e_value=5e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25695633-25699781 transcript_region:SL2.40ch12:25695633..25699781+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase (AHRD V1 **-- B6K5X8_SCHJY); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbC26197159g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.4|1|1|1|5|0|227; (*GB) gi|255547740|ref|XP_002514927.1| (e_value=3e-89) protein with unknown function [Ricinus communis];; (*SWP) sp|Q3UVK0|ERMP1_MOUSE (e_value=5e-27) Endoplasmic reticulum metallopeptidase 1 OS=Mus musculus GN=Ermp1 PE=1 SV=2;; (*TAIR) AT1G67420.1 (e_value=2e-77) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255411-25260358 FORWARD LENGTH=872;; (*ITAG) Solyc12g035500.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:25714177-25741519 transcript_region:SL2.40ch12:25714177..25741519+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_XENLA); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00027449g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|2|0|359; (*GB) gi|225458854|ref|XP_002283343.1| (e_value=7e-148) PREDICTED: uncharacterized protein LOC100267832 [Vitis vinifera];; (*TAIR) AT4G31540.1 (e_value=3e-41) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc04g077760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60262000-60264613 transcript_region:SL2.40ch04:60262000..60264613+ go_terms:GO:0000145 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00027449g0006.1 protein AED:0.26 eAED:0.29 QI:0|1|0.5|1|1|1|2|0|384; (*GB) gi|225458854|ref|XP_002283343.1| (e_value=2e-162) PREDICTED: uncharacterized protein LOC100267832 [Vitis vinifera];; (*TAIR) AT4G31540.1 (e_value=2e-22) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc04g077760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60262000-60264613 transcript_region:SL2.40ch04:60262000..60264613+ go_terms:GO:0000145 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbC24812705g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|118; (*GB) gi|224127394|ref|XP_002320063.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|O22131|LBD18_ARATH (e_value=4e-41) LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2;; (*TAIR) AT2G45420.1 (e_value=3e-42) | Symbols: LBD18 | LOB domain-containing protein 18 | chr2:18718601-18720445 FORWARD LENGTH=262;; (*ITAG) Solyc01g091420.1.1 (e_value=6e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76810419-76814829 transcript_region:SL2.40ch01:76810419..76814829+ functional_description:"LOB domain protein 30 (AHRD V1 ***- D7M5R6_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00027839g0004.1 protein AED:0.00 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|185; (*GB) gi|78191406|gb|ABB29924.1| (e_value=4e-68) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|Q9SI20|EF1D2_ARATH (e_value=2e-64) Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1;; (*TAIR) AT2G18110.1 (e_value=1e-65) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr2:7872636-7873713 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=3e-71) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00010394g0008.1 protein AED:0.12 eAED:0.13 QI:241|0.85|0.75|1|0.71|0.5|8|0|585; (*GB) gi|296090195|emb|CBI40014.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=9e-63) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT1G08540.1 (e_value=7e-165) | Symbols: SIGB, SIG1, SIG2, SIGA, ATSIG1, ABC1, ATSIG2 | RNApolymerase sigma subunit 2 | chr1:2703461-2706696 FORWARD LENGTH=572;; (*ITAG) Solyc01g081490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73199206-73204884 transcript_region:SL2.40ch01:73199206..73204884+ go_terms:GO:0006355 functional_description:"RNA polymerase sigma factor (AHRD V1 *-*- Q59965_SYNP2); contains Interpro domain(s) IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid "; GO:0006355 NbS00010394g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.25|1|1|4|0|181; (*GB) gi|357450573|ref|XP_003595563.1| (e_value=3e-29) Polygalacturonase [Medicago truncatula];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=2e-22) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43880.1 (e_value=8e-28) | Symbols: | Pectin lyase-like superfamily protein | chr2:18173034-18174482 FORWARD LENGTH=394;; (*ITAG) Solyc12g019140.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9293132-9295123 transcript_region:SL2.40ch12:9293132..9295123+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00010394g0009.1 protein AED:0.38 eAED:0.38 QI:0|0.33|0|0.5|0.33|0.75|4|0|170; (*GB) gi|3202040|gb|AAC19401.1| (e_value=2e-68) permease 1 [Mesembryanthemum crystallinum];; (*SWP) sp|P93039|NAT4_ARATH (e_value=1e-58) Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2;; (*TAIR) AT1G49960.1 (e_value=8e-60) | Symbols: | Xanthine/uracil permease family protein | chr1:18498700-18501699 FORWARD LENGTH=526;; (*ITAG) Solyc01g106920.2.1 (e_value=2e-100) genomic_reference:SL2.40ch01 gene_region:86388409-86392269 transcript_region:SL2.40ch01:86388409..86392269- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00004130g0022.1 protein AED:0.21 eAED:0.24 QI:0|0|0.16|1|0.2|0.5|6|420|390; (*GB) gi|255567786|ref|XP_002524871.1| (e_value=3e-141) hydrolase, putative [Ricinus communis];; (*SWP) sp|Q944L7|Y1480_ARATH (e_value=1e-141) Uncharacterized protein At1g18480 OS=Arabidopsis thaliana GN=At1g18480 PE=2 SV=1;; (*TAIR) AT1G18480.1 (e_value=9e-143) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:6361639-6362814 FORWARD LENGTH=391;; (*ITAG) Solyc08g014290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:3977144-3978331 transcript_region:SL2.40ch08:3977144..3978331- go_terms:GO:0004722 functional_description:"Serine-threonine protein phosphatase (AHRD V1 **-* Q5CPY7_CRYPV); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00004130g0023.1 protein AED:0.02 eAED:0.02 QI:352|1|1|1|0.66|0.42|7|196|564; (*GB) gi|224145323|ref|XP_002325602.1| (e_value=3e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=9e-96) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT3G59690.1 (e_value=1e-124) | Symbols: IQD13 | IQ-domain 13 | chr3:22049572-22051479 FORWARD LENGTH=517;; (*ITAG) Solyc08g014280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:3966331-3970317 transcript_region:SL2.40ch08:3966331..3970317+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 *--* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00049668g0002.1 protein AED:0.78 eAED:0.82 QI:61|0.33|0|0.75|1|0.75|4|0|91; (*GB) gi|255549595|ref|XP_002515849.1| (e_value=7e-29) Bystin, putative [Ricinus communis];; (*SWP) sp|Q54IS0|BYST_DICDI (e_value=5e-13) Bystin OS=Dictyostelium discoideum GN=bysl PE=3 SV=1;; (*TAIR) AT1G31660.1 (e_value=2e-27) | Symbols: | CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444;; (*ITAG) Solyc07g056550.2.1 (e_value=2e-31) genomic_reference:SL2.40ch07 gene_region:61660092-61665125 transcript_region:SL2.40ch07:61660092..61665125+ go_terms:GO:0030515 functional_description:"Bystin (AHRD V1 ***- B5DGE9_SALSA); contains Interpro domain(s) IPR007955 Bystin "; GO:0030515 NbS00057207g0007.1 protein AED:0.04 eAED:0.06 QI:0|0.66|0.25|1|1|1|4|0|356; (*GB) gi|359495151|ref|XP_003634927.1| (e_value=1e-96) PREDICTED: LOW QUALITY PROTEIN: laccase-14-like [Vitis vinifera];; (*SWP) sp|Q9FY79|LAC14_ARATH (e_value=1e-74) Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1;; (*TAIR) AT5G09360.1 (e_value=1e-75) | Symbols: LAC14 | laccase 14 | chr5:2906426-2908658 REVERSE LENGTH=569;; (*ITAG) Solyc04g058000.1.1 (e_value=1e-118) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54293779-54295313 transcript_region:SL2.40ch04:54293779..54295313+ go_terms:GO:0008152,GO:0055114 functional_description:"Laccase (AHRD V1 ***- Q38757_ACEPS); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0008152,GO:0055114 NbS00057207g0010.1 protein AED:0.14 eAED:0.26 QI:0|0.2|0.16|0.83|0.2|0.16|6|0|173; (*GB) gi|297799656|ref|XP_002867712.1| (e_value=6e-17) hypothetical protein ARALYDRAFT_492539 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G20170.3 (e_value=1e-19) | Symbols: | Protein of Unknown Function (DUF239) | chr2:8701013-8703395 FORWARD LENGTH=384;; (*ITAG) Solyc04g058030.1.1 (e_value=1e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54305390-54307553 transcript_region:SL2.40ch04:54305390..54307553+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 **-- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00012064g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|428; (*GB) gi|225445486|ref|XP_002285167.1| (e_value=2e-112) PREDICTED: NADP-dependent alkenal double bond reductase P1 [Vitis vinifera];; (*SWP) sp|Q39172|P1_ARATH (e_value=4e-77) NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1;; (*TAIR) AT5G16970.1 (e_value=3e-78) | Symbols: AT-AER, AER | alkenal reductase | chr5:5576291-5578001 REVERSE LENGTH=345;; (*ITAG) Solyc09g091700.2.1 (e_value=5e-131) genomic_reference:SL2.40ch09 gene_region:66290352-66291649 transcript_region:SL2.40ch09:66290352..66291649+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* B4RDK4_PHEZH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00012064g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|281; (*GB) gi|224089629|ref|XP_002308787.1| (e_value=3e-39) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=2e-32) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=1e-33) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc09g091690.1.1 (e_value=1e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66286162-66287328 transcript_region:SL2.40ch09:66286162..66287328+ functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00012064g0010.1 protein AED:0.02 eAED:0.18 QI:92|0|0|1|0|0.5|2|0|161; (*ITAG) Solyc04g039710.1.1 (e_value=3e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00012064g0007.1 protein AED:0.35 eAED:0.66 QI:0|0|0|1|0.5|0.66|3|0|91 NbS00012064g0008.1 protein AED:0.30 eAED:0.30 QI:0|0|0|1|0|0|2|0|97; (*ITAG) Solyc09g091710.1.1 (e_value=8e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00035303g0004.1 protein AED:0.26 eAED:0.27 QI:253|0.5|0.66|1|0|0.33|3|0|325; (*GB) gi|21693562|gb|AAM75346.1|AF520810_1 (e_value=9e-167) DNA-binding protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|Q5SMK6|P2C54_ORYSJ (e_value=3e-110) Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=8e-76) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc07g007220.2.1 (e_value=4e-173) genomic_reference:SL2.40ch07 gene_region:1957198-1960831 transcript_region:SL2.40ch07:1957198..1960831- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00034818g0002.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|182; (*GB) gi|224071143|ref|XP_002303364.1| (e_value=5e-19) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q9LYD3|DREB3_ARATH (e_value=4e-18) Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1;; (*TAIR) AT5G11590.1 (e_value=3e-19) | Symbols: TINY2 | Integrase-type DNA-binding superfamily protein | chr5:3727789-3728499 REVERSE LENGTH=236;; (*ITAG) Solyc08g078420.1.1 (e_value=3e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:59396497-59396940 transcript_region:SL2.40ch08:59396497..59396940+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-*- ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00010737g0011.1 protein AED:0.11 eAED:0.15 QI:0|0.33|0|1|1|1|4|0|437; (*GB) gi|125555316|gb|EAZ00922.1| (e_value=6e-46) hypothetical protein OsI_22951 [Oryza sativa Indica Group];; (*SWP) sp|P22196|PER2_ARAHY (e_value=8e-40) Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1;; (*TAIR) AT4G11290.1 (e_value=1e-40) | Symbols: | Peroxidase superfamily protein | chr4:6869993-6871476 FORWARD LENGTH=326;; (*ITAG) Solyc05g013350.2.1 (e_value=2e-158) genomic_reference:SL2.40ch05 gene_region:6440494-6442318 transcript_region:SL2.40ch05:6440494..6442318+ go_terms:GO:0004601 functional_description:"Peroxidase 1 (AHRD V1 **** B6T173_MAIZE); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00010737g0014.1 protein AED:0.30 eAED:0.30 QI:416|0.76|0.85|1|0.92|0.85|14|146|436; (*GB) gi|224102443|ref|XP_002312679.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7E9|GGT2_ARATH (e_value=0.0) Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1;; (*TAIR) AT1G70580.4 (e_value=0.0) | Symbols: AOAT2, GGT2 | alanine-2-oxoglutarate aminotransferase 2 | chr1:26613222-26615845 FORWARD LENGTH=481;; (*ITAG) Solyc05g013380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6451782-6457884 transcript_region:SL2.40ch05:6451782..6457884+ go_terms:GO:0004021 functional_description:"Alanine aminotransferase 2 (AHRD V1 **** A8IKE5_SOYBN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0004021 NbS00010737g0010.1 protein AED:0.26 eAED:0.31 QI:0|0|0|0.5|1|1|2|0|77 NbS00016888g0005.1 protein AED:0.08 eAED:0.09 QI:0|1|0.83|1|1|1|6|0|605; (*GB) gi|255586527|ref|XP_002533902.1| (e_value=5e-153) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SRM9|ALMT8_ARATH (e_value=9e-137) Aluminum-activated malate transporter 8 OS=Arabidopsis thaliana GN=ALMT8 PE=3 SV=1;; (*TAIR) AT3G11680.1 (e_value=7e-138) | Symbols: | Aluminium activated malate transporter family protein | chr3:3686995-3689329 REVERSE LENGTH=488;; (*ITAG) Solyc01g007090.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1649310-1653839 transcript_region:SL2.40ch01:1649310..1653839+ go_terms:GO:0015140 functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--* Q07DQ0_WHEAT); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0015140 NbS00016888g0008.1 protein AED:0.27 eAED:0.34 QI:21|0.5|0.33|1|0.5|0.33|3|0|69; (*GB) gi|225442841|ref|XP_002285351.1| (e_value=1e-24) PREDICTED: monothiol glutaredoxin-S15, mitochondrial isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LBK6|GRS15_ARATH (e_value=6e-24) Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2;; (*TAIR) AT3G15660.2 (e_value=5e-25) | Symbols: ATGRX4, GRX4 | glutaredoxin 4 | chr3:5308134-5309383 REVERSE LENGTH=169;; (*ITAG) Solyc06g067960.2.1 (e_value=1e-32) genomic_reference:SL2.40ch06 gene_region:38512806-38516407 transcript_region:SL2.40ch06:38512806..38516407- go_terms:GO:0046872 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7L4W4_ARALY); contains Interpro domain(s) IPR004480 Glutaredoxin-related protein "; GO:0046872 NbS00013992g0005.1 protein AED:0.20 eAED:0.20 QI:129|0.5|0.33|1|0.5|0.33|3|0|242; (*GB) gi|302143937|emb|CBI23042.3| (e_value=1e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q43385|DOF37_ARATH (e_value=4e-42) Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2;; (*TAIR) AT3G61850.1 (e_value=3e-43) | Symbols: DAG1 | Dof-type zinc finger DNA-binding family protein | chr3:22895495-22897150 FORWARD LENGTH=296;; (*ITAG) Solyc01g096120.2.1 (e_value=1e-85) genomic_reference:SL2.40ch01 gene_region:78996543-78998774 transcript_region:SL2.40ch01:78996543..78998774+ go_terms:GO:0003700 functional_description:"Dof zinc finger protein 2 (AHRD V1 *-*- A5HWF1_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0003700 NbS00007460g0002.1 protein AED:0.08 eAED:0.08 QI:279|1|1|1|0.25|0.6|5|210|263; (*GB) gi|298205263|emb|CBI17322.3| (e_value=1e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q56YJ8|FAMA_ARATH (e_value=2e-83) Transcription factor FAMA OS=Arabidopsis thaliana GN=FMA PE=1 SV=1;; (*TAIR) AT3G24140.1 (e_value=2e-84) | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:8715525-8717772 REVERSE LENGTH=414;; (*ITAG) Solyc09g091760.1.1 (e_value=7e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66328970-66330468 transcript_region:SL2.40ch09:66328970..66330468+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MJZ9_9ASPA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00007460g0008.1 protein AED:0.12 eAED:0.13 QI:0|0.66|0.62|1|0.66|0.75|16|0|1309; (*GB) gi|171854677|dbj|BAG16528.1| (e_value=0.0) putative 26S proteasome subunit RPN2a [Capsicum chinense];; (*SWP) sp|Q37680|NU5M_WHEAT (e_value=2e-179) NADH-ubiquinone oxidoreductase chain 5 OS=Triticum aestivum GN=ND5 PE=3 SV=1;; (*TAIR) AT2G32730.1 (e_value=0.0) | Symbols: | 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit | chr2:13880189-13885464 FORWARD LENGTH=1004;; (*ITAG) Solyc09g091750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66318786-66327848 transcript_region:SL2.40ch09:66318786..66327848+ go_terms:GO:0032183,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- O48844_ARATH); contains Interpro domain(s) IPR016642 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "; GO:0032183,GO:0004175 NbS00027001g0003.1 protein AED:0.17 eAED:0.17 QI:453|0.87|0.55|1|0.87|0.88|9|0|859; (*GB) gi|359489358|ref|XP_002272264.2| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Vitis vinifera];; (*SWP) sp|Q9M2E8|HDG1_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1;; (*TAIR) AT3G61150.1 (e_value=0.0) | Symbols: HDG1, HD-GL2-1 | homeodomain GLABROUS 1 | chr3:22630769-22634875 FORWARD LENGTH=808;; (*ITAG) Solyc03g026070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7855770-7860225 transcript_region:SL2.40ch03:7855770..7860225- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-8 (AHRD V1 *-*- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00005228g0009.1 protein AED:0.12 eAED:0.12 QI:355|1|1|1|1|1|5|1307|369; (*GB) gi|225453303|ref|XP_002268524.1| (e_value=0.0) PREDICTED: metacaspase-1-like [Vitis vinifera];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=0.0) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=0.0) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g088710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75229978-75236379 transcript_region:SL2.40ch01:75229978..75236379- go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00005228g0008.1 protein AED:0.51 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|115; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-22) hypothetical protein [Nicotiana tabacum]; NbS00016003g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|76; (*GB) gi|113207073|emb|CAL36576.1| (e_value=9e-36) deficiens H49 homologue [Misopates orontium];; (*SWP) sp|P29382|SEP1_ARATH (e_value=1e-35) Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2;; (*TAIR) AT5G15800.1 (e_value=8e-37) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251;; (*ITAG) Solyc02g089200.2.1 (e_value=1e-36) genomic_reference:SL2.40ch02 gene_region:45652869-45657506 transcript_region:SL2.40ch02:45652869..45657506+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00020503g0005.1 protein AED:0.01 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|91; (*ITAG) Solyc00g019990.1.1 (e_value=2e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:11804753-11804968 transcript_region:SL2.40ch00:11804753..11804968+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020503g0004.1 protein AED:0.45 eAED:0.45 QI:0|1|0|1|1|1|2|0|81; (*ITAG) Solyc00g019980.2.1 (e_value=5e-39) genomic_reference:SL2.40ch00 gene_region:11803308-11804537 transcript_region:SL2.40ch00:11803308..11804537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020503g0010.1 protein AED:0.44 eAED:0.58 QI:0|0|0.33|1|1|1|3|0|127; (*ITAG) Solyc00g019970.2.1 (e_value=7e-51) genomic_reference:SL2.40ch00 gene_region:11800292-11801283 transcript_region:SL2.40ch00:11800292..11801283+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020503g0012.1 protein AED:0.74 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|67 NbS00020503g0020.1 protein AED:0.24 eAED:0.36 QI:0|0|0|1|0|0|5|0|421; (*GB) gi|57014001|ref|YP_173472.1| (e_value=8e-121) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=2e-83) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=3e-92) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=7e-124) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00020503g0019.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.5|0|0|2|0|126; (*GB) gi|57014003|ref|YP_173474.1| (e_value=2e-40) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=5e-24) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc11g020610.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11747788-11752875 transcript_region:SL2.40ch11:11747788..11752875+ go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00020503g0017.1 protein AED:0.46 eAED:1.00 QI:0|0|0|1|0|0|2|0|73 NbS00020503g0016.1 protein AED:0.36 eAED:0.56 QI:0|0|0|1|0|0|2|0|71; (*ITAG) Solyc00g316530.1.1 (e_value=2e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:21609206-21609442 transcript_region:SL2.40ch00:21609206..21609442+ go_terms:GO:0005524 functional_description:"Unknown Protein (AHRD V1)"; GO:0005524 NbS00036568g0006.1 protein AED:0.09 eAED:0.09 QI:2|0.33|0.25|1|0|0.25|4|0|1484; (*GB) gi|255562960|ref|XP_002522485.1| (e_value=0.0) pattern formation protein, putative [Ricinus communis];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=0.0) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc05g013040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6150503-6155924 transcript_region:SL2.40ch05:6150503..6155924+ go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00036568g0002.1 protein AED:0.26 eAED:0.26 QI:136|0|0.5|1|0|0.5|2|0|443; (*GB) gi|225462922|ref|XP_002265609.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 [Vitis vinifera];; (*SWP) sp|Q8BG32|PSD11_MOUSE (e_value=8e-107) 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3;; (*TAIR) AT1G29150.1 (e_value=0.0) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419;; (*ITAG) Solyc05g013030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6145882-6147153 transcript_region:SL2.40ch05:6145882..6147153+ go_terms:GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0004175 NbS00010610g0013.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|1|1|2|111|383; (*GB) gi|225438019|ref|XP_002274734.1| (e_value=1e-80) PREDICTED: uncharacterized protein LOC100263471 [Vitis vinifera];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=3e-50) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT5G55550.4 (e_value=1e-75) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22502077-22503658 REVERSE LENGTH=448;; (*ITAG) Solyc09g072790.2.1 (e_value=2e-153) genomic_reference:SL2.40ch09 gene_region:60987196-60990149 transcript_region:SL2.40ch09:60987196..60990149- go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00010610g0014.1 protein AED:0.35 eAED:0.37 QI:0|0.33|0|1|0.33|0|4|0|489; (*GB) gi|255571236|ref|XP_002526568.1| (e_value=0.0) oligopeptide transporter, putative [Ricinus communis];; (*SWP) sp|Q9FNL7|PTR3_ARATH (e_value=5e-151) Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1;; (*TAIR) AT5G46050.1 (e_value=4e-152) | Symbols: ATPTR3, PTR3 | peptide transporter 3 | chr5:18675062-18679071 REVERSE LENGTH=582;; (*ITAG) Solyc09g072780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60970924-60974861 transcript_region:SL2.40ch09:60970924..60974861- go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00010610g0008.1 protein AED:0.16 eAED:0.16 QI:271|0.85|0.75|1|1|1|8|0|797; (*GB) gi|224132308|ref|XP_002321307.1| (e_value=3e-173) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10385.1 (e_value=2e-43) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc09g072720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:60831847-60835782 transcript_region:SL2.40ch09:60831847..60835782+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN86_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00010610g0015.1 protein AED:0.25 eAED:0.25 QI:0|0.85|0.62|1|1|1|8|0|419; (*GB) gi|255571240|ref|XP_002526570.1| (e_value=3e-152) brca1 associated ring domain, putative [Ricinus communis];; (*SWP) sp|Q8RXD4|BRCA1_ARATH (e_value=3e-88) Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1;; (*TAIR) AT1G04020.1 (e_value=2e-132) | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=714;; (*ITAG) Solyc05g016230.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15163373-15172656 transcript_region:SL2.40ch05:15163373..15172656+ go_terms:GO:0003713,GO:0003677 functional_description:"Breast cancer type 1 susceptibility protein homolog (Fragment) (AHRD V1 *--- A5A751_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713,GO:0003677 NbS00058528g0001.1 protein AED:0.00 eAED:0.10 QI:86|0|0.5|1|0|0.5|2|437|127; (*GB) gi|224091969|ref|XP_002309421.1| (e_value=6e-47) SAUR family protein [Populus trichocarpa];; (*TAIR) AT2G36210.1 (e_value=8e-38) | Symbols: | SAUR-like auxin-responsive protein family | chr2:15186326-15186733 REVERSE LENGTH=135;; (*ITAG) Solyc09g009980.1.1 (e_value=2e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3436952-3437398 transcript_region:SL2.40ch09:3436952..3437398+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00058528g0002.1 protein AED:0.35 eAED:0.35 QI:0|1|0.33|1|1|1|3|0|295; (*GB) gi|224088529|ref|XP_002308465.1| (e_value=5e-136) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52610.1 (e_value=3e-114) | Symbols: | unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:19510513-19512547 FORWARD LENGTH=475;; (*ITAG) Solyc09g009990.2.1 (e_value=1e-178) genomic_reference:SL2.40ch09 gene_region:3438477-3443240 transcript_region:SL2.40ch09:3438477..3443240- functional_description:"Transposon protein Mutator sub-class (AHRD V1 ***- B6TYN1_MAIZE)"; NbS00058528g0003.1 protein AED:0.37 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|254; (*GB) gi|224088529|ref|XP_002308465.1| (e_value=2e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52610.1 (e_value=1e-46) | Symbols: | unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:19510513-19512547 FORWARD LENGTH=475;; (*ITAG) Solyc09g009990.2.1 (e_value=1e-112) genomic_reference:SL2.40ch09 gene_region:3438477-3443240 transcript_region:SL2.40ch09:3438477..3443240- functional_description:"Transposon protein Mutator sub-class (AHRD V1 ***- B6TYN1_MAIZE)"; NbS00014993g0012.1 protein AED:0.28 eAED:0.28 QI:29|1|1|1|1|1|3|82|230; (*GB) gi|297797021|ref|XP_002866395.1| (e_value=5e-16) hypothetical protein ARALYDRAFT_496228 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G60800.1 (e_value=3e-17) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc11g069060.1.1 (e_value=1e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50736550-50737782 transcript_region:SL2.40ch11:50736550..50737782+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein (AHRD V1 ***- D7LIF5_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00014993g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|168 NbS00026527g0004.1 protein AED:0.23 eAED:0.24 QI:0|0.85|0.75|0.87|1|1|8|0|200; (*GB) gi|225449975|ref|XP_002272409.1| (e_value=7e-113) PREDICTED: methyltransferase-like protein 13 [Vitis vinifera];; (*SWP) sp|A5PK19|MET13_BOVIN (e_value=3e-28) Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1;; (*TAIR) AT3G60910.1 (e_value=2e-102) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22501727-22503182 FORWARD LENGTH=252;; (*ITAG) Solyc01g088000.2.1 (e_value=2e-124) genomic_reference:SL2.40ch01 gene_region:74602063-74609120 transcript_region:SL2.40ch01:74602063..74609120- go_terms:GO:0003824 functional_description:"Methyltransferase (AHRD V1 *-*- D0N411_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0003824 NbS00059206g0005.1 protein AED:0.24 eAED:0.24 QI:0|1|0.5|1|0.66|0.5|4|0|195; (*GB) gi|255552664|ref|XP_002517375.1| (e_value=5e-71) Auxin-induced protein 5NG4, putative [Ricinus communis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-19) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G28050.1 (e_value=7e-65) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367;; (*ITAG) Solyc02g087060.2.1 (e_value=8e-107) genomic_reference:SL2.40ch02 gene_region:44168265-44171706 transcript_region:SL2.40ch02:44168265..44171706+ functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LPP0_ARALY)"; NbS00062072g0001.1 protein AED:0.17 eAED:0.17 QI:5|0.83|0.85|1|1|1|7|0|304; (*GB) gi|225445597|ref|XP_002285409.1| (e_value=2e-104) PREDICTED: uncharacterized protein LOC100262987 [Vitis vinifera];; (*TAIR) AT3G53270.5 (e_value=1e-79) | Symbols: | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein | chr3:19750406-19752168 REVERSE LENGTH=280;; (*ITAG) Solyc07g007940.2.1 (e_value=6e-167) genomic_reference:SL2.40ch07 gene_region:2596028-2603587 transcript_region:SL2.40ch07:2596028..2603587- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019188 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 "; NbS00025705g0004.1 protein AED:0.10 eAED:0.10 QI:127|0.85|0.86|0.93|0.5|0.66|15|249|536; (*GB) gi|356538244|ref|XP_003537614.1| (e_value=0.0) PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like [Glycine max];; (*SWP) sp|Q5EBA1|SUV3_RAT (e_value=4e-98) ATP-dependent RNA helicase SUPV3L1, mitochondrial OS=Rattus norvegicus GN=Supv3l1 PE=2 SV=1;; (*TAIR) AT4G14790.1 (e_value=0.0) | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase, mitochondrial (SUV3) | chr4:8496351-8499829 REVERSE LENGTH=571;; (*ITAG) Solyc09g082380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63534872-63547345 transcript_region:SL2.40ch09:63534872..63547345+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q10D00_ORYSJ); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0004004 NbS00014267g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|125; (*ITAG) Solyc07g045590.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56065223-56065627 transcript_region:SL2.40ch07:56065223..56065627- functional_description:"Tracheary element differentiation-related 6 (AHRD V1 --*- C1PGW0_ZINEL)"; NbS00014267g0001.1 protein AED:0.22 eAED:0.22 QI:525|0.3|0.54|0.72|0.9|0.90|11|340|664; (*GB) gi|224121268|ref|XP_002330785.1| (e_value=2e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQ34|Y2433_ARATH (e_value=1e-75) Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1;; (*TAIR) AT4G31080.1 (e_value=3e-83) | Symbols: | Protein of unknown function (DUF2296) | chr4:15121186-15123072 FORWARD LENGTH=409;; (*ITAG) Solyc06g054650.2.1 (e_value=1e-127) genomic_reference:SL2.40ch06 gene_region:33894872-33909524 transcript_region:SL2.40ch06:33894872..33909524- functional_description:"Lunapark b (AHRD V1 ***- A8DT12_HAPBU); contains Interpro domain(s) IPR019273 Protein of unknown function DUF2296 "; NbS00051725g0009.1 protein AED:0.36 eAED:0.37 QI:0|0.5|0|1|1|1|3|0|400; (*GB) gi|225428354|ref|XP_002283202.1| (e_value=7e-114) PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=1e-86) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=1e-87) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g112320.2.1 (e_value=2e-156) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00051725g0002.1 protein AED:0.23 eAED:0.23 QI:546|0.66|0.75|1|0|0.25|4|325|250; (*GB) gi|255546644|ref|XP_002514381.1| (e_value=9e-50) voltage-gated clc-type chloride channel, putative [Ricinus communis];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=2e-31) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.2 (e_value=1e-32) | Symbols: CLC-E | chloride channel E | chr4:16836367-16839345 REVERSE LENGTH=749;; (*ITAG) Solyc01g112310.2.1 (e_value=2e-82) genomic_reference:SL2.40ch01 gene_region:90142605-90157819 transcript_region:SL2.40ch01:90142605..90157819+ go_terms:GO:0016020,GO:0055085 functional_description:"H(+)/Cl(-) exchange transporter ClcA (AHRD V1 *-*- C9PHM9_VIBFU); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00033628g0001.1 protein AED:0.10 eAED:0.11 QI:12|0.66|0.71|1|1|1|7|0|617; (*GB) gi|326516322|dbj|BAJ92316.1| (e_value=5e-165) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q84Q51|GUN21_ORYSJ (e_value=1e-154) Endoglucanase 21 OS=Oryza sativa subsp. japonica GN=GLU9 PE=2 SV=1;; (*TAIR) AT2G32990.1 (e_value=2e-131) | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 | chr2:14003361-14005844 FORWARD LENGTH=525;; (*ITAG) Solyc07g064870.2.1 (e_value=2e-165) genomic_reference:SL2.40ch07 gene_region:64070313-64075930 transcript_region:SL2.40ch07:64070313..64075930- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00039066g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0.83|1|1|1|6|0|242; (*GB) gi|445613|prf||1909359B (e_value=3e-165) ribosomal protein L7;; (*SWP) sp|Q9LHP1|RL74_ARATH (e_value=2e-151) 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1;; (*TAIR) AT3G13580.1 (e_value=2e-152) | Symbols: | Ribosomal protein L30/L7 family protein | chr3:4433809-4435109 FORWARD LENGTH=244;; (*ITAG) Solyc07g008370.2.1 (e_value=5e-168) genomic_reference:SL2.40ch07 gene_region:3146832-3149440 transcript_region:SL2.40ch07:3146832..3149440+ go_terms:GO:0003735,GO:0042803 functional_description:"60S ribosomal protein L7 (AHRD V1 ***- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0003735,GO:0042803 NbS00039066g0004.1 protein AED:0.41 eAED:0.41 QI:159|0.33|0.25|0.5|1|1|4|0|63 NbS00062266g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|71; (*GB) gi|57013908|ref|YP_173381.1| (e_value=9e-28) hypothetical protein NitaMp035 [Nicotiana tabacum]; NbS00062266g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|255557876|ref|XP_002519967.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc00g313030.1.1 (e_value=9e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:21534607-21534768 transcript_region:SL2.40ch00:21534607..21534768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00045599g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|195625884|gb|ACG34772.1| (e_value=1e-18) DNA binding protein [Zea mays];; (*SWP) sp|Q4PSU4|AGL61_ARATH (e_value=4e-15) Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1;; (*TAIR) AT2G34440.1 (e_value=3e-17) | Symbols: AGL29 | AGAMOUS-like 29 | chr2:14526950-14527468 FORWARD LENGTH=172;; (*ITAG) Solyc03g119680.1.1 (e_value=1e-52) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62286625-62287158 transcript_region:SL2.40ch03:62286625..62287158+ go_terms:GO:0005634 functional_description:"MADS-box protein-like (AHRD V1 *-*- Q6YTZ9_ORYSJ); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00009363g0012.1 protein AED:0.12 eAED:0.12 QI:29|1|0.66|1|1|1|3|334|398; (*GB) gi|30678002|ref|NP_565284.3| (e_value=1e-109) NAC domain containing protein 35 [Arabidopsis thaliana];; (*SWP) sp|Q9FIW5|NAC94_ARATH (e_value=1e-55) Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=2 SV=1;; (*TAIR) AT2G02450.2 (e_value=3e-112) | Symbols: ANAC034, ANAC035, LOV1, NAC035 | NAC domain containing protein 35 | chr2:648044-650649 FORWARD LENGTH=414;; (*ITAG) Solyc01g102740.2.1 (e_value=6e-117) genomic_reference:SL2.40ch01 gene_region:83236708-83238761 transcript_region:SL2.40ch01:83236708..83238761+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9GVP9_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00009363g0010.1 protein AED:0.16 eAED:0.16 QI:423|0.8|0.66|1|0.8|0.66|6|0|226; (*GB) gi|255556685|ref|XP_002519376.1| (e_value=2e-104) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G02410.1 (e_value=6e-89) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr2:632713-634613 FORWARD LENGTH=308;; (*ITAG) Solyc10g044840.1.1 (e_value=1e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23753213-23760216 transcript_region:SL2.40ch10:23753213..23760216- functional_description:"PIN domain containing protein (Yacp-like protein) (AHRD V1 *--- C7TLS1_LACRL); contains Interpro domain(s) IPR010298 Protein of unknown function DUF901 "; NbS00009363g0011.1 protein AED:0.10 eAED:0.15 QI:0|0|0|1|0|0|2|0|120; (*ITAG) Solyc05g033910.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:46423905-46425314 transcript_region:SL2.40ch05:46423905..46425314+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012905g0001.1 protein AED:0.18 eAED:0.18 QI:0|0.75|0.4|1|1|1|5|137|276; (*GB) gi|302143126|emb|CBI20421.3| (e_value=8e-110) unnamed protein product [Vitis vinifera];; (*SWP) sp|O64774|Y1146_ARATH (e_value=3e-61) G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460 OS=Arabidopsis thaliana GN=At1g61460 PE=2 SV=4;; (*TAIR) AT1G61460.1 (e_value=4e-63) | Symbols: | S-locus protein kinase, putative | chr1:22674268-22676735 REVERSE LENGTH=598;; (*ITAG) Solyc07g063710.1.1 (e_value=3e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63320710-63324451 transcript_region:SL2.40ch07:63320710..63324451- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00012905g0012.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0.42|1|1|1|7|197|629; (*GB) gi|147834674|emb|CAN77291.1| (e_value=9e-158) hypothetical protein VITISV_004595 [Vitis vinifera];; (*SWP) sp|O64774|Y1146_ARATH (e_value=1e-111) G-type lectin S-receptor-like serine/threonine-protein kinase At1g61460 OS=Arabidopsis thaliana GN=At1g61460 PE=2 SV=4;; (*TAIR) AT4G11900.1 (e_value=4e-90) | Symbols: | S-locus lectin protein kinase family protein | chr4:7150241-7153542 REVERSE LENGTH=849;; (*ITAG) Solyc07g063710.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63320710-63324451 transcript_region:SL2.40ch07:63320710..63324451- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00012905g0013.1 protein AED:0.29 eAED:0.29 QI:0|0.2|0.33|1|0.4|0.16|6|377|316; (*GB) gi|147781106|emb|CAN64973.1| (e_value=6e-54) hypothetical protein VITISV_025930 [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=9e-34) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=7e-35) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc07g063730.1.1 (e_value=2e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63332268-63335513 transcript_region:SL2.40ch07:63332268..63335513+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00050901g0019.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0.5|0.33|3|0|513; (*GB) gi|77745465|gb|ABB02631.1| (e_value=0.0) unknown [Solanum tuberosum];; (*SWP) sp|P33629|TBA_PRUDU (e_value=0.0) Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1;; (*TAIR) AT4G14960.2 (e_value=0.0) | Symbols: TUA6 | Tubulin/FtsZ family protein | chr4:8548769-8550319 REVERSE LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00050901g0018.1 protein AED:0.20 eAED:0.34 QI:0|0|0|1|0|1|2|0|156 NbS00050901g0001.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|68 NbS00050901g0011.1 protein AED:0.43 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|72 NbS00050901g0017.1 protein AED:0.12 eAED:0.12 QI:0|0.90|0.81|1|0.66|0.68|22|39|918; (*GB) gi|225445380|ref|XP_002281687.1| (e_value=0.0) PREDICTED: protein argonaute PNH1 [Vitis vinifera];; (*SWP) sp|Q69VD5|PNH1_ORYSJ (e_value=0.0) Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1;; (*TAIR) AT5G43810.2 (e_value=0.0) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc12g006790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1200019-1205876 transcript_region:SL2.40ch12:1200019..1205876- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00050901g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|0|0.33|3|86|66 NbS00022273g0003.1 protein AED:0.36 eAED:0.41 QI:0|0.37|0.22|0.77|0.12|0.33|9|0|193; (*GB) gi|38196022|gb|AAR13702.1| (e_value=4e-28) nuclear division RFT1-like protein [Brassica oleracea];; (*TAIR) AT5G07630.1 (e_value=1e-14) | Symbols: | lipid transporters | chr5:2410703-2414523 FORWARD LENGTH=611;; (*ITAG) Solyc05g051630.2.1 (e_value=2e-19) genomic_reference:SL2.40ch05 gene_region:61145683-61160111 transcript_region:SL2.40ch05:61145683..61160111+ go_terms:GO:0005515,GO:0034202 functional_description:"RFT1 family protein (AHRD V1 ***- D3BUS7_POLPA); contains Interpro domain(s) IPR007594 RFT1 "; GO:0005515,GO:0034202 NbS00030837g0005.1 protein AED:0.06 eAED:0.06 QI:59|1|1|1|1|1|2|127|75; (*GB) gi|3915102|sp|Q40901.1|DEF_PETIN (e_value=3e-41) RecName: Full=Defensin-like protein; AltName: Full=Gamma-thionin homolog PPT; Flags: Precursor;; (*SWP) sp|Q40901|DEF_PETIN (e_value=8e-43) Defensin-like protein OS=Petunia integrifolia PE=2 SV=1;; (*TAIR) AT2G02100.1 (e_value=9e-31) | Symbols: LCR69, PDF2.2 | low-molecular-weight cysteine-rich 69 | chr2:528397-528885 FORWARD LENGTH=77;; (*ITAG) Solyc07g007730.2.1 (e_value=3e-40) genomic_reference:SL2.40ch07 gene_region:2374606-2376176 transcript_region:SL2.40ch07:2374606..2376176- go_terms:GO:0030414 functional_description:"Defensin protein (AHRD V1 ***- B1N683_SOLPI); contains Interpro domain(s) IPR008177 Gamma Purothionin "; GO:0030414 NbS00030837g0006.1 protein AED:0.23 eAED:0.23 QI:150|0.83|0.85|1|1|1|7|204|723; (*GB) gi|296084521|emb|CBI25542.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P60300|CLCG_ARATH (e_value=0.0) Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2;; (*TAIR) AT5G33280.1 (e_value=0.0) | Symbols: | Voltage-gated chloride channel family protein | chr5:12549280-12552305 FORWARD LENGTH=765;; (*ITAG) Solyc07g007690.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2347155-2354951 transcript_region:SL2.40ch07:2347155..2354951+ go_terms:GO:0005515,GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005515,GO:0005247 NbS00038309g0009.1 protein AED:0.06 eAED:0.06 QI:251|0.87|0.88|1|0.62|0.66|9|218|277; (*GB) gi|359474781|ref|XP_002280163.2| (e_value=1e-109) PREDICTED: protein BCCIP homolog [Vitis vinifera];; (*SWP) sp|O64885|BCCIP_ARATH (e_value=4e-85) Protein BCCIP homolog OS=Arabidopsis thaliana GN=At2g44510 PE=1 SV=2;; (*TAIR) AT2G44510.1 (e_value=3e-86) | Symbols: | CDK inhibitor P21 binding protein | chr2:18377411-18379030 FORWARD LENGTH=326;; (*ITAG) Solyc04g007850.2.1 (e_value=5e-142) genomic_reference:SL2.40ch04 gene_region:1518553-1521840 transcript_region:SL2.40ch04:1518553..1521840- functional_description:"BCCIP homolog (AHRD V1 **-- C1BJX3_OSMMO)"; NbS00038309g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|2|0|133; (*GB) gi|225424289|ref|XP_002284639.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100247453 [Vitis vinifera];; (*TAIR) AT1G70780.1 (e_value=1e-50) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26695462-26695975 REVERSE LENGTH=140;; (*ITAG) Solyc04g007840.2.1 (e_value=3e-74) genomic_reference:SL2.40ch04 gene_region:1515366-1517843 transcript_region:SL2.40ch04:1515366..1517843- functional_description:"Senescence-associated protein (AHRD V1 ***- B6TMS7_MAIZE)"; NbS00000418g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|659; (*GB) gi|224081377|ref|XP_002306389.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=0.0) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2271065-2273350 transcript_region:SL2.40ch02:2271065..2273350- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00000418g0117.1 protein AED:0.08 eAED:0.08 QI:53|0.94|0.94|0.94|1|1|18|0|1282 NbS00000418g0121.1 protein AED:0.11 eAED:0.12 QI:0|0.5|0.57|1|0.66|0.71|7|526|670 NbS00000418g0113.1 protein AED:0.00 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|190 NbS00000418g0122.1 protein AED:0.27 eAED:0.27 QI:82|1|1|1|0.42|0.5|8|344|337 NbS00007176g0008.1 protein AED:0.17 eAED:0.21 QI:0|0|0|1|0.75|0.6|5|0|539; (*GB) gi|359484343|ref|XP_002283936.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268163 [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=7e-46) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G19670.1 (e_value=4e-155) | Symbols: | Exostosin family protein | chr5:6647025-6649358 FORWARD LENGTH=610;; (*ITAG) Solyc12g008340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1743068-1746064 transcript_region:SL2.40ch12:1743068..1746064+ go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LZA5_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00007176g0002.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.66|1|1|3|0|94; (*GB) gi|255552117|ref|XP_002517103.1| (e_value=1e-24) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q41144|STC_RICCO (e_value=4e-20) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT5G26340.1 (e_value=3e-20) | Symbols: MSS1, STP13, ATSTP13 | Major facilitator superfamily protein | chr5:9243851-9246994 REVERSE LENGTH=526;; (*ITAG) Solyc12g008320.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1732691-1736090 transcript_region:SL2.40ch12:1732691..1736090+ go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_CHICK); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00047784g0006.1 protein AED:0.45 eAED:0.58 QI:105|0.4|0.33|0.83|0.2|0.33|6|0|220; (*GB) gi|297742557|emb|CBI34706.3| (e_value=1e-51) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G32500.1 (e_value=1e-47) | Symbols: | Stress responsive alpha-beta barrel domain protein | chr2:13795371-13797120 REVERSE LENGTH=276;; (*ITAG) Solyc12g056350.1.1 (e_value=1e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47664443-47668233 transcript_region:SL2.40ch12:47664443..47668233- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00047784g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|224; (*GB) gi|53830847|gb|AAU95246.1| (e_value=7e-93) putative thaumatin-like protein [Solanum tuberosum];; (*SWP) sp|P13046|PRR1_TOBAC (e_value=1e-91) Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G11650.1 (e_value=3e-88) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244;; (*ITAG) Solyc12g056390.1.1 (e_value=2e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47677578-47678261 transcript_region:SL2.40ch12:47677578..47678261+ functional_description:"Thaumatin-like protein (AHRD V1 **-- Q5DJS5_TOBAC); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; NbS00001709g0013.1 protein AED:0.15 eAED:0.15 QI:227|1|1|1|0.85|0.75|8|809|341; (*GB) gi|21388546|emb|CAD33241.1| (e_value=0.0) putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9LKA3|MDHM2_ARATH (e_value=0.0) Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1;; (*TAIR) AT3G15020.1 (e_value=0.0) | Symbols: mMDH2 | Lactate/malate dehydrogenase family protein | chr3:5056139-5057941 FORWARD LENGTH=341;; (*ITAG) Solyc12g014180.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5027817-5032069 transcript_region:SL2.40ch12:5027817..5032069- go_terms:GO:0008152,GO:0005975,GO:0055114 functional_description:"Malate dehydrogenase (AHRD V1 ***- Q8L5C9_SOLTU); contains Interpro domain(s) IPR010097 Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria "; GO:0008152,GO:0005975,GO:0055114 NbS00001709g0005.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.25|1|1|1|4|0|143; (*GB) gi|13384068|gb|AAK21258.1|AF335245_1 (e_value=2e-85) MADS-box transcription factor FBP29 [Petunia x hybrida];; (*SWP) sp|Q6R4S6|CAL_BRARC (e_value=3e-66) Transcription factor CAULIFLOWER OS=Brassica rapa subsp. chinensis GN=CAL PE=2 SV=1;; (*TAIR) AT1G69120.1 (e_value=1e-66) | Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256;; (*ITAG) Solyc02g089210.2.1 (e_value=5e-80) genomic_reference:SL2.40ch02 gene_region:45666857-45671596 transcript_region:SL2.40ch02:45666857..45671596+ go_terms:GO:0046982 functional_description:"MADS box transcription factor (AHRD V1 ***- Q689E7_GENTR); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0046982 NbS00001709g0018.1 protein AED:0.11 eAED:0.16 QI:0|0.42|0.37|1|0.42|0.75|8|478|805; (*GB) gi|225461616|ref|XP_002283002.1| (e_value=5e-124) PREDICTED: transcription factor GTE4-like [Vitis vinifera];; (*SWP) sp|Q9LNC4|GTE4_ARATH (e_value=1e-89) Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1;; (*TAIR) AT1G06230.3 (e_value=8e-91) | Symbols: GTE4 | global transcription factor group E4 | chr1:1907626-1910183 FORWARD LENGTH=766;; (*ITAG) Solyc12g014170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5021721-5024196 transcript_region:SL2.40ch12:5021721..5024196- functional_description:"Bromodomain containing 2 (Fragment) (AHRD V1 *--- A2AAU1_HUMAN); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00042707g0007.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|221|197; (*GB) gi|225425511|ref|XP_002266305.1| (e_value=3e-68) PREDICTED: uncharacterized protein At4g28440 isoform 2 [Vitis vinifera];; (*SWP) sp|O49453|Y4844_ARATH (e_value=2e-57) Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1;; (*TAIR) AT1G23750.1 (e_value=4e-65) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr1:8400638-8401171 FORWARD LENGTH=137;; (*ITAG) Solyc02g077740.2.1 (e_value=6e-61) genomic_reference:SL2.40ch02 gene_region:37189312-37191744 transcript_region:SL2.40ch02:37189312..37191744- functional_description:"OB-fold nucleic acid binding domain containing protein (AHRD V1 ***- B6SHT0_MAIZE); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00042707g0006.1 protein AED:0.03 eAED:0.03 QI:5634|0.83|0.85|1|0.5|0.57|7|370|432; (*GB) gi|325516248|gb|ADZ24702.1| (e_value=0.0) tyrosine aminotransferase 1 [Solanum pennellii];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=0.0) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=0.0) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc10g007110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1508116-1511280 transcript_region:SL2.40ch10:1508116..1511280- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** Q8GUE9_SOLSC); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00020672g0002.1 protein AED:0.07 eAED:0.07 QI:48|0.8|0.33|0.83|1|1|6|0|124; (*GB) gi|302142499|emb|CBI19702.3| (e_value=1e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54TC5|MAFL2_DICDI (e_value=2e-14) Maf-like protein DDB_G0281937 OS=Dictyostelium discoideum GN=DDB_G0281937 PE=3 SV=1;; (*TAIR) AT5G42770.2 (e_value=1e-46) | Symbols: | Maf-like protein | chr5:17152147-17154355 FORWARD LENGTH=233;; (*ITAG) Solyc04g080440.2.1 (e_value=5e-48) genomic_reference:SL2.40ch04 gene_region:62208525-62213336 transcript_region:SL2.40ch04:62208525..62213336- go_terms:GO:0005737 functional_description:"Maf-like protein CV_0124 (AHRD V1 ***- B6TNZ3_MAIZE); contains Interpro domain(s) IPR003697 Maf-like protein "; GO:0005737 NbS00005752g0003.1 protein AED:0.21 eAED:0.21 QI:225|0|0.5|1|1|1|2|0|288; (*GB) gi|350539944|ref|NP_001234586.1| (e_value=4e-74) TCP transcription factor 16 [Solanum lycopersicum];; (*ITAG) Solyc03g116320.2.1 (e_value=7e-77) genomic_reference:SL2.40ch03 gene_region:59855716-59857215 transcript_region:SL2.40ch03:59855716..59857215+ functional_description:"TCP family transcription factor (AHRD V1 *-*- A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00019947g0008.1 protein AED:0.01 eAED:0.01 QI:218|1|1|1|1|1|2|290|216; (*GB) gi|299891471|gb|ADJ57588.1| (e_value=1e-70) mitochondrial small heat shock protein [Capsicum annuum];; (*SWP) sp|P11890|HS23C_CHERU (e_value=6e-46) Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1;; (*TAIR) AT5G51440.1 (e_value=1e-39) | Symbols: | HSP20-like chaperones superfamily protein | chr5:20891242-20892013 FORWARD LENGTH=210;; (*ITAG) Solyc08g078700.2.1 (e_value=2e-72) genomic_reference:SL2.40ch08 gene_region:59635844-59637072 transcript_region:SL2.40ch08:59635844..59637072+ functional_description:"Heat shock protein 22 (AHRD V1 ***- Q27JQ0_METAN); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00019947g0009.1 protein AED:0.26 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|92; (*ITAG) Solyc08g078710.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59638773-59639878 transcript_region:SL2.40ch08:59638773..59639878+ functional_description:"Heat shock protein (AHRD V1 *-*- A9QVH3_9FABA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00019947g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|255576070|ref|XP_002528930.1| (e_value=1e-16) heat-shock protein, putative [Ricinus communis];; (*SWP) sp|Q39818|HS22M_SOYBN (e_value=3e-17) Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1;; (*TAIR) AT5G51440.1 (e_value=6e-12) | Symbols: | HSP20-like chaperones superfamily protein | chr5:20891242-20892013 FORWARD LENGTH=210;; (*ITAG) Solyc08g078710.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:59638773-59639878 transcript_region:SL2.40ch08:59638773..59639878+ functional_description:"Heat shock protein (AHRD V1 *-*- A9QVH3_9FABA); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00025916g0003.1 protein AED:0.29 eAED:0.29 QI:145|1|1|1|1|1|5|332|236; (*GB) gi|4887020|gb|AAD32146.1|AF123508_1 (e_value=2e-144) Nt-iaa28 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24407|IAA16_ARATH (e_value=1e-100) Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1;; (*TAIR) AT3G04730.1 (e_value=8e-102) | Symbols: IAA16 | indoleacetic acid-induced protein 16 | chr3:1288993-1290415 REVERSE LENGTH=236;; (*ITAG) Solyc01g097290.2.1 (e_value=3e-133) genomic_reference:SL2.40ch01 gene_region:79957345-79960205 transcript_region:SL2.40ch01:79957345..79960205+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00043528g0001.1 protein AED:0.23 eAED:0.23 QI:624|1|1|1|1|1|2|160|106; (*GB) gi|356534653|ref|XP_003535867.1| (e_value=3e-45) PREDICTED: probable protein phosphatase 2C 49-like [Glycine max];; (*SWP) sp|Q3EAF9|P2C49_ARATH (e_value=3e-40) Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1;; (*TAIR) AT3G62260.2 (e_value=3e-41) | Symbols: | Protein phosphatase 2C family protein | chr3:23038516-23040391 REVERSE LENGTH=384;; (*ITAG) Solyc06g009390.2.1 (e_value=7e-51) genomic_reference:SL2.40ch06 gene_region:3312201-3315959 transcript_region:SL2.40ch06:3312201..3315959- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase-2C (AHRD V1 ***- O82469_MESCR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00040594g0019.1 protein AED:0.03 eAED:0.03 QI:0|0|0.5|1|0|0.5|2|0|267; (*GB) gi|225466356|ref|XP_002275014.1| (e_value=1e-75) PREDICTED: uncharacterized protein LOC100255200 [Vitis vinifera];; (*TAIR) AT2G38090.1 (e_value=7e-66) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc05g052610.2.1 (e_value=3e-89) genomic_reference:SL2.40ch05 gene_region:61964804-61965984 transcript_region:SL2.40ch05:61964804..61965984+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9FIL9_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00040594g0015.1 protein AED:0.11 eAED:0.11 QI:0|1|0.66|1|0.8|0.83|6|0|556; (*GB) gi|225466920|ref|XP_002265173.1| (e_value=0.0) PREDICTED: laccase-4-like [Vitis vinifera];; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc09g014240.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5730476-5734045 transcript_region:SL2.40ch09:5730476..5734045+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00040594g0021.1 protein AED:0.15 eAED:0.15 QI:144|0.75|0.66|1|0.62|0.44|9|0|384; (*GB) gi|350538149|ref|NP_001234585.1| (e_value=0.0) chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum];; (*SWP) sp|P46283|S17P_ARATH (e_value=0.0) Sedoheptulose-1,7-bisphosphatase, chloroplastic OS=Arabidopsis thaliana GN=At3g55800 PE=1 SV=1;; (*TAIR) AT3G55800.1 (e_value=0.0) | Symbols: SBPASE | sedoheptulose-bisphosphatase | chr3:20709640-20711421 FORWARD LENGTH=393;; (*ITAG) Solyc05g052600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61954189-61957576 transcript_region:SL2.40ch05:61954189..61957576+ go_terms:GO:0042132 functional_description:"Fructose-1 6-bisphosphatase class 1 (AHRD V1 **** B9M1N3_GEOSF); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase IPR000719 Protein kinase, core "; GO:0042132 NbS00040594g0022.1 protein AED:0.24 eAED:0.24 QI:826|1|1|1|0.71|0.5|8|444|166; (*GB) gi|224101091|ref|XP_002312138.1| (e_value=9e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GXP4|Y2991_ARATH (e_value=8e-55) Uncharacterized protein At2g39910 OS=Arabidopsis thaliana GN=At2g39910 PE=2 SV=2;; (*TAIR) AT2G39910.1 (e_value=6e-56) | Symbols: | ARM repeat superfamily protein | chr2:16660604-16662886 FORWARD LENGTH=436;; (*ITAG) Solyc06g009690.1.1 (e_value=4e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3633968-3638512 transcript_region:SL2.40ch06:3633968..3638512- go_terms:GO:0005488 functional_description:"cDNA clone J033051C12 full insert sequence (AHRD V1 *-*- B7EME2_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00040594g0018.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0|0|3|0|439; (*GB) gi|48209914|gb|AAT40508.1| (e_value=0.0) Glycosyl hydrolases family 17 protein [Solanum demissum];; (*SWP) sp|P23433|E13D_TOBAC (e_value=2e-42) Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1;; (*TAIR) AT3G55780.1 (e_value=2e-109) | Symbols: | Glycosyl hydrolase superfamily protein | chr3:20705627-20707021 FORWARD LENGTH=429;; (*ITAG) Solyc11g072230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52534222-52535457 transcript_region:SL2.40ch11:52534222..52535457- go_terms:GO:0005515,GO:0008810 functional_description:"Glucan endo-1 3-beta-glucosidase 3 (AHRD V1 ***- B6TLN1_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515,GO:0008810 NbS00011323g0012.1 protein AED:0.21 eAED:0.21 QI:359|0.87|0.88|1|0.56|0.70|17|0|867; (*GB) gi|225435251|ref|XP_002284945.1| (e_value=0.0) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Vitis vinifera];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=0.0) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.5 (e_value=0.0) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300792 FORWARD LENGTH=885;; (*ITAG) Solyc11g069160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00011323g0006.1 protein AED:0.19 eAED:0.20 QI:174|0.14|0.12|0.87|1|1|8|0|668; (*GB) gi|147792453|emb|CAN63581.1| (e_value=0.0) hypothetical protein VITISV_033335 [Vitis vinifera];; (*TAIR) AT1G07970.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693;; (*ITAG) Solyc11g069170.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50878904-50883953 transcript_region:SL2.40ch11:50878904..50883953- functional_description:"Transmembrane protein 209 (AHRD V1 *-*- TM209_MOUSE); contains Interpro domain(s) IPR019176 Cytochrome B561-related, N-terminal "; NbS00020037g0004.1 protein AED:0.17 eAED:0.23 QI:0|0.75|0.4|1|1|1|5|0|811; (*GB) gi|225439372|ref|XP_002270072.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc01g006890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1466483-1471428 transcript_region:SL2.40ch01:1466483..1471428+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbS00006247g0001.1 protein AED:0.00 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|333; (*ITAG) Solyc11g008460.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2656557-2660047 transcript_region:SL2.40ch11:2656557..2660047+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- SNUT1_MOUSE); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00001385g0015.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.33|3|0|426; (*GB) gi|225454520|ref|XP_002281690.1| (e_value=8e-71) PREDICTED: UPF0667 protein C1orf55 homolog [Vitis vinifera];; (*TAIR) AT4G01000.1 (e_value=5e-46) | Symbols: | Ubiquitin-like superfamily protein | chr4:432186-433727 REVERSE LENGTH=415;; (*ITAG) Solyc01g095790.2.1 (e_value=2e-165) genomic_reference:SL2.40ch01 gene_region:78734577-78738612 transcript_region:SL2.40ch01:78734577..78738612+ functional_description:"Splicing factor 3a subunit 3 (AHRD V1 *-*- D8TLN4_VOLCA)"; NbS00001385g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|113; (*GB) gi|537639|gb|AAA21438.1| (e_value=1e-29) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|O04004|NLTP6_AMBAR (e_value=2e-17) Non-specific lipid-transfer protein OS=Ambrosia artemisiifolia PE=1 SV=1;; (*ITAG) Solyc01g095780.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:78728923-78729535 transcript_region:SL2.40ch01:78728923..78729535- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q9M5C1_TOBAC); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00001385g0013.1 protein AED:0.08 eAED:0.08 QI:53|1|0.85|1|1|1|7|0|508; (*GB) gi|70779014|gb|AAZ08051.1| (e_value=0.0) wax synthase [Petunia x hybrida];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=1e-131) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49210.1 (e_value=1e-180) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18238216-18241161 REVERSE LENGTH=518;; (*ITAG) Solyc01g011430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:9218936-9221367 transcript_region:SL2.40ch01:9218936..9221367- functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- A5UWY0_ROSS1); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00001385g0004.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|1|1|2|0|255; (*GB) gi|255581771|ref|XP_002531687.1| (e_value=2e-56) Tyramine N-feruloyltransferase 4/11, putative [Ricinus communis];; (*SWP) sp|Q9SMB8|THT11_TOBAC (e_value=2e-50) Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1;; (*TAIR) AT2G39020.1 (e_value=3e-54) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:16295392-16296102 FORWARD LENGTH=236;; (*ITAG) Solyc12g096840.1.1 (e_value=6e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63940599-63941443 transcript_region:SL2.40ch12:63940599..63941443- go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6SUK9_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00001385g0018.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|288; (*GB) gi|255564721|ref|XP_002523355.1| (e_value=1e-30) RING-H2 finger protein ATL3K, putative [Ricinus communis];; (*SWP) sp|Q9C7E9|ATL20_ARATH (e_value=9e-30) RING-H2 finger protein ATL20 OS=Arabidopsis thaliana GN=ATL20 PE=2 SV=2;; (*TAIR) AT5G53110.1 (e_value=1e-30) | Symbols: | RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382;; (*ITAG) Solyc01g095810.2.1 (e_value=1e-104) genomic_reference:SL2.40ch01 gene_region:78744017-78745429 transcript_region:SL2.40ch01:78744017..78745429- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00003435g0002.1 protein AED:0.16 eAED:0.16 QI:0|0|0.5|1|0|0|2|183|208; (*GB) gi|350536135|ref|NP_001233975.1| (e_value=3e-87) transcription factor [Solanum lycopersicum];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=1e-66) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=7e-62) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc01g111500.2.1 (e_value=6e-102) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00006576g0004.1 protein AED:0.01 eAED:0.01 QI:39|1|0|1|1|1|2|173|51 NbS00019986g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|243; (*GB) gi|359473008|ref|XP_002278514.2| (e_value=8e-93) PREDICTED: piriformospora indica-insensitive protein 2-like [Vitis vinifera];; (*SWP) sp|Q5PP26|PII2_ARATH (e_value=6e-68) Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1;; (*TAIR) AT1G13230.1 (e_value=5e-69) | Symbols: | Leucine-rich repeat (LRR) family protein | chr1:4520679-4522439 FORWARD LENGTH=424;; (*ITAG) Solyc05g009990.2.1 (e_value=1e-97) genomic_reference:SL2.40ch05 gene_region:4190580-4192782 transcript_region:SL2.40ch05:4190580..4192782+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00030604g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.37|0.33|1|0.62|0.66|9|0|385; (*GB) gi|350535549|ref|NP_001234200.1| (e_value=5e-149) polygalacturonase [Solanum lycopersicum];; (*SWP) sp|Q9LW07|PGLR3_ARATH (e_value=8e-80) Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1;; (*TAIR) AT3G15720.1 (e_value=6e-81) | Symbols: | Pectin lyase-like superfamily protein | chr3:5325329-5327457 REVERSE LENGTH=456;; (*ITAG) Solyc08g060970.2.1 (e_value=8e-158) genomic_reference:SL2.40ch08 gene_region:43354428-43359171 transcript_region:SL2.40ch08:43354428..43359171- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **-* Q9ZPI8_SOLLC); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00045903g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|103 NbS00045903g0007.1 protein AED:0.29 eAED:0.41 QI:0|0.42|0.25|0.87|0.71|0.62|8|0|309; (*GB) gi|297840681|ref|XP_002888222.1| (e_value=1e-122) hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ASS7|CAAT2_ARATH (e_value=5e-123) Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1;; (*TAIR) AT1G58030.1 (e_value=4e-124) | Symbols: CAT2 | cationic amino acid transporter 2 | chr1:21464185-21468141 REVERSE LENGTH=635;; (*ITAG) Solyc10g081460.1.1 (e_value=5e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61835895-61843695 transcript_region:SL2.40ch10:61835895..61843695- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C3GEP6_BACTU); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00001049g0005.1 protein AED:0.07 eAED:0.07 QI:405|1|1|1|1|1|9|286|592; (*GB) gi|255583640|ref|XP_002532575.1| (e_value=0.0) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=0.0) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT4G12420.2 (e_value=0.0) | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587;; (*ITAG) Solyc08g079090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:59901779-59905784 transcript_region:SL2.40ch08:59901779..59905784+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00001049g0006.1 protein AED:0.12 eAED:0.12 QI:183|1|1|1|1|1|7|142|209; (*GB) gi|225426944|ref|XP_002266233.1| (e_value=1e-122) PREDICTED: axial regulator YABBY 1 [Vitis vinifera];; (*SWP) sp|Q6H668|YAB4_ORYSJ (e_value=1e-73) Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1;; (*TAIR) AT2G45190.1 (e_value=4e-74) | Symbols: AFO, FIL, YAB1 | Plant-specific transcription factor YABBY family protein | chr2:18628450-18630552 REVERSE LENGTH=229;; (*ITAG) Solyc08g079100.2.1 (e_value=7e-118) genomic_reference:SL2.40ch08 gene_region:59908783-59911941 transcript_region:SL2.40ch08:59908783..59911941- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM8_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00001049g0110.1 protein AED:0.17 eAED:0.18 QI:0|0.8|0.66|1|0.6|0.66|6|78|315 NbS00001049g0102.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|270 NbS00023587g0005.1 protein AED:0.09 eAED:0.10 QI:555|0.28|0.12|1|0.57|0.62|8|0|1118; (*GB) gi|359481502|ref|XP_002274593.2| (e_value=1e-147) PREDICTED: uncharacterized protein LOC100248303 [Vitis vinifera];; (*TAIR) AT3G53540.1 (e_value=6e-41) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805-19850670 REVERSE LENGTH=924;; (*ITAG) Solyc09g005750.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:521012-526426 transcript_region:SL2.40ch09:521012..526426+ functional_description:"Os03g0819700 protein (Fragment) (AHRD V1 *-*- Q0DMA9_ORYSJ)"; NbS00006413g0007.1 protein AED:0.01 eAED:0.02 QI:0|0.5|0.33|1|0|0.66|3|0|312; (*GB) gi|167600640|gb|ABZ89182.1| (e_value=1e-106) putative protein [Coffea canephora];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=9e-37) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT3G04570.1 (e_value=3e-74) | Symbols: AHL19 | AT-hook motif nuclear-localized protein 19 | chr3:1231221-1232168 FORWARD LENGTH=315;; (*ITAG) Solyc11g006090.1.1 (e_value=2e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:876985-880355 transcript_region:SL2.40ch11:876985..880355+ functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 **-- A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; NbS00023244g0007.1 protein AED:0.30 eAED:0.30 QI:706|0.8|0.90|1|0.2|0.36|11|80|170; (*GB) gi|359490010|ref|XP_002275133.2| (e_value=1e-102) PREDICTED: altered inheritance rate of mitochondria protein 25-like [Vitis vinifera];; (*SWP) sp|P47140|AIM25_YEAST (e_value=6e-23) Altered inheritance rate of mitochondria protein 25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AIM25 PE=1 SV=1;; (*TAIR) AT2G04940.1 (e_value=2e-101) | Symbols: | scramblase-related | chr2:1736671-1740254 REVERSE LENGTH=392;; (*ITAG) Solyc03g006460.2.1 (e_value=3e-111) genomic_reference:SL2.40ch03 gene_region:1045981-1053451 transcript_region:SL2.40ch03:1045981..1053451- go_terms:GO:0017128 functional_description:"Phospholipid scramblase 1 (AHRD V1 **** A3LVQ7_PICST); contains Interpro domain(s) IPR005552 Scramblase "; GO:0017128 NbS00001565g0005.1 protein AED:0.05 eAED:0.05 QI:163|1|0.85|1|1|1|7|1300|796; (*GB) gi|337732515|gb|AEI71779.1| (e_value=0.0) JOKA2 [Nicotiana tabacum];; (*SWP) sp|Q5RC94|NBR1_PONAB (e_value=3e-18) Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1;; (*TAIR) AT4G24690.1 (e_value=5e-129) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein | chr4:12741191-12744202 FORWARD LENGTH=704;; (*ITAG) Solyc06g071770.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40590948-40595053 transcript_region:SL2.40ch06:40590948..40595053+ go_terms:GO:0008270 functional_description:"ZZ type zinc finger domain-containing protein (Fragment) (AHRD V1 *--- C1GFD2_PARBD); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; GO:0008270 NbS00005832g0011.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0.75|0.6|5|0|1303; (*GB) gi|390367011|ref|XP_795274.2| (e_value=0.0) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Strongylocentrotus purpuratus];; (*SWP) sp|O75643|U520_HUMAN (e_value=0.0) U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2;; (*TAIR) AT1G20960.2 (e_value=0.0) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g071620.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40497582-40504087 transcript_region:SL2.40ch06:40497582..40504087- go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00005832g0013.1 protein AED:0.38 eAED:0.42 QI:0|0.5|0|1|0|0|3|0|199; (*GB) gi|255548788|ref|XP_002515450.1| (e_value=2e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G31930.1 (e_value=3e-30) | Symbols: | Mitochondrial glycoprotein family protein | chr4:15449710-15450804 REVERSE LENGTH=234;; (*ITAG) Solyc06g065800.2.1 (e_value=1e-59) genomic_reference:SL2.40ch06 gene_region:37627029-37630530 transcript_region:SL2.40ch06:37627029..37630530- go_terms:GO:0005759 functional_description:"Mitochondrial glycoprotein family protein (AHRD V1 ***- D7MAT7_ARALY); contains Interpro domain(s) IPR003428 Mitochondrial glycoprotein "; GO:0005759 NbS00005832g0014.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|0|0|2|0|151; (*GB) gi|357451431|ref|XP_003595992.1| (e_value=5e-55) U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula];; (*SWP) sp|Q9VUV9|U520_DROME (e_value=8e-31) Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4;; (*TAIR) AT2G42270.1 (e_value=1e-51) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr2:17604330-17610848 FORWARD LENGTH=2172;; (*ITAG) Solyc06g082100.2.1 (e_value=7e-62) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00025994g0001.1 protein AED:0.43 eAED:0.43 QI:0|1|0|1|1|1|2|0|132; (*GB) gi|89276297|gb|ABD66505.1| (e_value=1e-85) actin depolymerizing factor 3 [Gossypium hirsutum];; (*SWP) sp|Q9FVI1|ADF2_PETHY (e_value=1e-82) Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1;; (*TAIR) AT5G59880.1 (e_value=1e-80) | Symbols: ADF3 | actin depolymerizing factor 3 | chr5:24120382-24121628 FORWARD LENGTH=139;; (*ITAG) Solyc06g005360.2.1 (e_value=4e-91) genomic_reference:SL2.40ch06 gene_region:372206-374775 transcript_region:SL2.40ch06:372206..374775+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 3 (AHRD V1 **** A1XJ46_GOSHI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00024076g0007.1 protein AED:0.16 eAED:0.16 QI:233|0.89|0.75|1|0.89|0.9|20|0|1203; (*GB) gi|225452112|ref|XP_002281005.1| (e_value=0.0) PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Vitis vinifera];; (*SWP) sp|Q08BT5|K1468_XENTR (e_value=2e-65) LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1;; (*TAIR) AT5G16210.1 (e_value=0.0) | Symbols: | HEAT repeat-containing protein | chr5:5290999-5297779 REVERSE LENGTH=1180;; (*ITAG) Solyc02g086340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43586427-43595256 transcript_region:SL2.40ch02:43586427..43595256- go_terms:GO:0005488 functional_description:"LisH domain and HEAT repeat-containing protein KIAA1468 (AHRD V1 *-*- K1468_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00005441g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|125 NbS00005441g0103.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|0.5|0.33|3|0|350 NbS00005441g0201.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|4|0|681 NbS00005441g0221.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|4|185|314 NbS00005441g0226.1 protein AED:0.37 eAED:0.37 QI:358|0.57|0.37|0.87|0.28|0.37|8|0|256 NbS00005441g0220.1 protein AED:0.28 eAED:0.48 QI:0|0|0.5|1|1|1|2|168|55 NbS00005441g0223.1 protein AED:0.29 eAED:0.29 QI:428|1|0.85|1|0.66|0.57|7|0|252 NbS00005441g0231.1 protein AED:0.34 eAED:0.34 QI:169|0.6|0.66|1|0.4|0.33|6|0|339 NbS00005441g0229.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.42|0.5|0.57|7|0|205 NbS00005441g0227.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|0|0|2|0|116 NbS00051235g0007.1 protein AED:0.20 eAED:0.20 QI:0|0.7|0.72|1|0.7|0.72|11|364|550; (*GB) gi|224140169|ref|XP_002323457.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYP9|IMA2_ORYSJ (e_value=0.0) Importin subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os01g0158000 PE=2 SV=1;; (*TAIR) AT5G03070.1 (e_value=0.0) | Symbols: IMPA-9 | importin alpha isoform 9 | chr5:718468-721395 REVERSE LENGTH=519;; (*ITAG) Solyc10g084270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63212066-63219689 transcript_region:SL2.40ch10:63212066..63219689+ go_terms:GO:0005488 functional_description:"Importin alpha-2 subunit (AHRD V1 ***- B6SUZ9_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00006520g0009.1 protein AED:0.15 eAED:0.15 QI:194|0.93|0.93|1|0.8|0.81|16|531|697; (*GB) gi|359476161|ref|XP_002283083.2| (e_value=2e-176) PREDICTED: uncharacterized protein LOC100249152 [Vitis vinifera];; (*SWP) sp|Q6MG49|BAG6_RAT (e_value=4e-13) Large proline-rich protein BAG6 OS=Rattus norvegicus GN=Bag6 PE=2 SV=2;; (*TAIR) AT5G25270.1 (e_value=1e-110) | Symbols: | Ubiquitin-like superfamily protein | chr5:8757577-8762002 REVERSE LENGTH=658;; (*ITAG) Solyc06g036720.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:23955142-23972017 transcript_region:SL2.40ch06:23955142..23972017+ functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; NbS00006520g0010.1 protein AED:0.20 eAED:0.20 QI:94|0.8|0.83|1|0.8|0.83|6|462|156; (*GB) gi|255571087|ref|XP_002526494.1| (e_value=3e-92) 40S ribosomal protein S11, putative [Ricinus communis];; (*SWP) sp|P17093|RS11_SOYBN (e_value=5e-93) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=5e-90) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=5e-97) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00021088g0008.1 protein AED:0.04 eAED:0.04 QI:316|1|1|1|1|1|6|203|211; (*GB) gi|16755592|gb|AAL28022.1| (e_value=3e-136) small GTPase Rab2 [Nicotiana tabacum];; (*SWP) sp|P92963|RAB1C_ARATH (e_value=1e-135) Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2 SV=1;; (*TAIR) AT4G17170.1 (e_value=8e-137) | Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B | RAB GTPase homolog B1C | chr4:9644908-9646220 REVERSE LENGTH=211;; (*ITAG) Solyc12g011130.1.1 (e_value=3e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3971227-3974056 transcript_region:SL2.40ch12:3971227..3974056- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00021088g0005.1 protein AED:0.23 eAED:0.23 QI:316|1|1|1|1|1|9|198|520; (*GB) gi|89089752|gb|ABD60582.1| (e_value=0.0) ADP-glucose pyrophosphorylase small subunit [Nicotiana tabacum];; (*SWP) sp|P23509|GLGS_SOLTU (e_value=0.0) Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G48300.1 (e_value=0.0) | Symbols: ADG1, APS1 | ADP glucose pyrophosphorylase 1 | chr5:19570326-19572557 FORWARD LENGTH=520;; (*ITAG) Solyc07g056140.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61312709-61317321 transcript_region:SL2.40ch07:61312709..61317321- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** D5L5Q9_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase "; GO:0008878 NbS00023351g0011.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0.5|0.66|3|0|412; (*GB) gi|224136548|ref|XP_002322357.1| (e_value=4e-86) predicted protein [Populus trichocarpa];; (*TAIR) AT3G12920.1 (e_value=1e-60) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr3:4122127-4123323 REVERSE LENGTH=335;; (*ITAG) Solyc02g031710.2.1 (e_value=2e-86) genomic_reference:SL2.40ch02 gene_region:17478327-17479818 transcript_region:SL2.40ch02:17478327..17479818- go_terms:GO:0008270 functional_description:"Protein binding protein (AHRD V1 **-- D7L0L7_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00018204g0001.1 protein AED:0.11 eAED:0.14 QI:373|0.8|0.66|1|0.6|0.5|6|0|507; (*GB) gi|359496888|ref|XP_002269690.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253188 [Vitis vinifera];; (*TAIR) AT1G08050.1 (e_value=1e-37) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr1:2499088-2501311 REVERSE LENGTH=641;; (*ITAG) Solyc04g015280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5484893-5488972 transcript_region:SL2.40ch04:5484893..5488972+ go_terms:GO:0008270 functional_description:"Zinc finger RING-type (AHRD V1 **-- A2Q5E8_MEDTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00025018g0003.1 protein AED:0.20 eAED:0.20 QI:465|0.83|0.71|1|1|1|7|0|201; (*GB) gi|14278856|gb|AAK31299.1| (e_value=1e-122) Rac-like GTPase 1 [Nicotiana tabacum];; (*SWP) sp|Q39435|RAC1_BETVU (e_value=1e-122) Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1;; (*TAIR) AT3G51300.1 (e_value=7e-123) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g083580.2.1 (e_value=1e-124) genomic_reference:SL2.40ch02 gene_region:41510800-41514068 transcript_region:SL2.40ch02:41510800..41514068- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00024994g0004.1 protein AED:0.23 eAED:0.23 QI:265|0|0.33|1|1|1|3|0|523; (*GB) gi|85068606|gb|ABC69383.1| (e_value=0.0) CYP92A2v4 [Nicotiana tabacum];; (*SWP) sp|Q9SD85|F3PH_ARATH (e_value=3e-111) Flavonoid 3'-monooxygenase OS=Arabidopsis thaliana GN=CYP75B1 PE=1 SV=1;; (*TAIR) AT5G07990.1 (e_value=2e-112) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g122350.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64280253-64282856 transcript_region:SL2.40ch03:64280253..64282856+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00024994g0008.1 protein AED:0.40 eAED:0.48 QI:0|0|0|1|0|0|3|0|245; (*GB) gi|110433184|gb|ABG74350.1| (e_value=7e-64) cytochrome P450 [Capsicum chinense];; (*SWP) sp|P24465|C71A1_PERAE (e_value=2e-28) Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=2;; (*TAIR) AT5G07990.1 (e_value=3e-25) | Symbols: TT7, CYP75B1, D501 | Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513;; (*ITAG) Solyc03g122360.2.1 (e_value=1e-67) genomic_reference:SL2.40ch03 gene_region:64284455-64286504 transcript_region:SL2.40ch03:64284455..64286504+ go_terms:GO:0004508 functional_description:"Cytochrome P450"; GO:0004508 NbS00017200g0009.1 protein AED:0.07 eAED:0.07 QI:261|0.75|0.8|1|1|1|5|0|386; (*GB) gi|356557034|ref|XP_003546823.1| (e_value=0.0) PREDICTED: metal tolerance protein 10-like [Glycine max];; (*SWP) sp|Q0WU02|MTP10_ARATH (e_value=2e-177) Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1;; (*TAIR) AT1G16310.1 (e_value=1e-178) | Symbols: | Cation efflux family protein | chr1:5578435-5580585 FORWARD LENGTH=428;; (*ITAG) Solyc10g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:414474-416809 transcript_region:SL2.40ch10:414474..416809- go_terms:GO:0016020 functional_description:"Cation diffusion facilitator 9 (AHRD V1 **-- Q84ND5_STYHA); contains Interpro domain(s) IPR002524 Cation efflux protein "; GO:0016020 NbS00017200g0010.1 protein AED:0.40 eAED:0.45 QI:0|0|0|1|0|0.5|2|0|157; (*GB) gi|297842733|ref|XP_002889248.1| (e_value=3e-13) hypothetical protein ARALYDRAFT_477119 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G16320.1 (e_value=1e-15) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr1:5580951-5581932 FORWARD LENGTH=273; NbS00026409g0012.1 protein AED:0.14 eAED:0.14 QI:155|1|1|1|1|1|5|476|310; (*GB) gi|225443239|ref|XP_002271931.1| (e_value=1e-168) PREDICTED: uncharacterized protein LOC100263834 [Vitis vinifera];; (*TAIR) AT1G16080.1 (e_value=4e-165) | Symbols: | unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:5514394-5515761 FORWARD LENGTH=313;; (*ITAG) Solyc03g117740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60839793-60842602 transcript_region:SL2.40ch03:60839793..60842602+ functional_description:"Chloroplast At1g16080 protein (Fragment) (AHRD V1 *-*- Q1HRY1_SOLLC)"; NbS00026409g0001.1 protein AED:0.20 eAED:0.21 QI:328|0.66|0.57|1|1|1|7|0|328; (*GB) gi|225443245|ref|XP_002272159.1| (e_value=1e-116) PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060-like [Vitis vinifera];; (*SWP) sp|Q94AN4|AP2L1_ARATH (e_value=4e-83) AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1;; (*TAIR) AT1G16060.1 (e_value=3e-84) | Symbols: ADAP | ARIA-interacting double AP2 domain protein | chr1:5508563-5511609 FORWARD LENGTH=345;; (*ITAG) Solyc03g117720.2.1 (e_value=2e-130) genomic_reference:SL2.40ch03 gene_region:60828177-60832436 transcript_region:SL2.40ch03:60828177..60832436+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 ***- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00026409g0013.1 protein AED:0.14 eAED:0.14 QI:0|1|1|1|1|1|9|247|409; (*GB) gi|224057180|ref|XP_002299159.1| (e_value=2e-172) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S9M8|TLP8_ARATH (e_value=4e-139) Tubby-like protein 8 OS=Arabidopsis thaliana GN=TULP8 PE=2 SV=1;; (*TAIR) AT1G16070.1 (e_value=3e-140) | Symbols: AtTLP8, TLP8 | tubby like protein 8 | chr1:5511899-5513779 REVERSE LENGTH=397;; (*ITAG) Solyc03g117730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60832800-60836089 transcript_region:SL2.40ch03:60832800..60836089- go_terms:GO:0003700 functional_description:"Tubby-like protein 13 (AHRD V1 ***- D2CMM7_ORYSJ); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700 NbS00016610g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|170; (*GB) gi|76161012|gb|ABA40469.1| (e_value=8e-88) 60S ribosomal protein L21-like protein [Solanum tuberosum];; (*SWP) sp|Q9FDZ9|RL212_ARATH (e_value=1e-81) 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1;; (*TAIR) AT1G57860.1 (e_value=8e-83) | Symbols: | Translation protein SH3-like family protein | chr1:21430034-21430827 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=1e-91) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00016610g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|395; (*GB) gi|2326772|emb|CAA74847.1| (e_value=0.0) anther-specific protein [Nicotiana sylvestris];; (*SWP) sp|P06515|CHSY_ANTMA (e_value=2e-95) Chalcone synthase OS=Antirrhinum majus GN=CHS PE=3 SV=1;; (*TAIR) AT1G02050.1 (e_value=0.0) | Symbols: LAP6 | Chalcone and stilbene synthase family protein | chr1:359164-360441 REVERSE LENGTH=395;; (*ITAG) Solyc01g090600.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76030339-76031941 transcript_region:SL2.40ch01:76030339..76031941- go_terms:GO:0005576,GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase 3 protein (AHRD V1 ***- D5LQ17_BRARA); contains Interpro domain(s) IPR001099 Chalcone/stilbene synthase, N-terminal "; GO:0005576,GO:0008415,GO:0008152,GO:0009058 NbS00016610g0011.1 protein AED:0.22 eAED:0.22 QI:77|1|0.88|1|0.75|0.77|9|0|509; (*GB) gi|359489274|ref|XP_002274075.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263281 [Vitis vinifera];; (*TAIR) AT2G44970.2 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:18548999-18552019 REVERSE LENGTH=502;; (*ITAG) Solyc01g090590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76020555-76027535 transcript_region:SL2.40ch01:76020555..76027535- functional_description:"Os11g0109966 protein (Fragment) (AHRD V1 *-*- C7J8E6_ORYSJ)"; NbS00016610g0010.1 protein AED:0.20 eAED:0.33 QI:0|0|0|1|0|0|2|0|112; (*GB) gi|225240|prf||1211235BY (e_value=4e-30) ORF 581;; (*SWP) sp|Q27RY7|YCF2_SOLTU (e_value=3e-31) Protein ycf2 OS=Solanum tuberosum GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=6e-26) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00015701g0001.1 protein AED:0.00 eAED:0.14 QI:397|1|0.5|1|0|0|2|792|569; (*GB) gi|225447141|ref|XP_002271314.1| (e_value=0.0) PREDICTED: vacuolar protein 8 [Vitis vinifera];; (*TAIR) AT2G05810.2 (e_value=5e-179) | Symbols: | ARM repeat superfamily protein | chr2:2215225-2216967 REVERSE LENGTH=580;; (*ITAG) Solyc07g049390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56986780-56988489 transcript_region:SL2.40ch07:56986780..56988489- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L9A0_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00015701g0010.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.2|0.5|0.6|5|0|284 NbS00015701g0009.1 protein AED:0.40 eAED:0.68 QI:0|0|0|1|0|0|2|0|120 NbS00000839g0003.1 protein AED:0.26 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|399; (*GB) gi|225440055|ref|XP_002282259.1| (e_value=7e-142) PREDICTED: uncharacterized protein LOC100260255 [Vitis vinifera];; (*SWP) sp|Q9EQH4|TAF8_MOUSE (e_value=5e-13) Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=1;; (*TAIR) AT4G34340.1 (e_value=2e-82) | Symbols: TAF8 | TBP-associated factor 8 | chr4:16426771-16427832 REVERSE LENGTH=353;; (*ITAG) Solyc09g008150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1613203-1614324 transcript_region:SL2.40ch09:1613203..1614324- go_terms:GO:0003677 functional_description:"Transcription initiation factor TFIID subunit 8 (AHRD V1 *--- C0H851_SALSA); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; GO:0003677 NbS00000839g0009.1 protein AED:0.24 eAED:0.24 QI:133|0.66|0.75|1|1|1|4|375|95; (*GB) gi|351725531|ref|NP_001235816.1| (e_value=7e-45) uncharacterized protein LOC100305468 [Glycine max];; (*SWP) sp|Q2HIM5|MMGT_ARATH (e_value=1e-42) Membrane magnesium transporter OS=Arabidopsis thaliana GN=At5g03345 PE=2 SV=1;; (*TAIR) AT5G03345.1 (e_value=1e-43) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:814196-815478 FORWARD LENGTH=104;; (*ITAG) Solyc09g008140.2.1 (e_value=3e-58) genomic_reference:SL2.40ch09 gene_region:1607740-1612248 transcript_region:SL2.40ch09:1607740..1612248+ go_terms:GO:0015095 functional_description:"Membrane magnesium transporter 1 (AHRD V1 **** MMGT1_DANRE); contains Interpro domain(s) IPR018937 Magnesium transporter "; GO:0015095 NbS00031375g0006.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|627; (*GB) gi|225429973|ref|XP_002281412.1| (e_value=0.0) PREDICTED: probable peptide transporter At1g52190 [Vitis vinifera];; (*SWP) sp|Q8LPL2|PTR32_ARATH (e_value=0.0) Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2;; (*TAIR) AT3G16180.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr3:5481477-5484943 REVERSE LENGTH=591;; (*ITAG) Solyc05g005980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:729342-731896 transcript_region:SL2.40ch05:729342..731896- go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00031375g0002.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.33|1|1|3|0|90 NbS00025462g0007.1 protein AED:0.15 eAED:0.15 QI:0|1|0.75|1|0.66|0.5|4|0|225; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=2e-93) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=2e-52) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094630.2.1 (e_value=6e-137) genomic_reference:SL2.40ch02 gene_region:49792861-49797173 transcript_region:SL2.40ch02:49792861..49797173- go_terms:GO:0005488 functional_description:"Importin 13 (AHRD V1 **-- B1ASJ5_MOUSE); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005488 NbS00009640g0006.1 protein AED:0.01 eAED:0.01 QI:0|0|0.5|1|1|1|2|0|284; (*GB) gi|33771374|gb|AAQ54303.1| (e_value=5e-125) zinc finger protein PIF1 [Nicotiana benthamiana];; (*SWP) sp|Q96289|ZAT10_ARATH (e_value=4e-47) Zinc finger protein ZAT10 OS=Arabidopsis thaliana GN=ZAT10 PE=2 SV=1;; (*TAIR) AT1G27730.1 (e_value=3e-48) | Symbols: STZ, ZAT10 | salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227;; (*ITAG) Solyc04g077980.1.1 (e_value=1e-102) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:60443326-60444108 transcript_region:SL2.40ch04:60443326..60444108+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc-finger protein (AHRD V1 ***- Q40899_PETHY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00009640g0005.1 protein AED:0.27 eAED:0.28 QI:0|0|0.5|1|0|0|2|255|132 NbS00005496g0007.1 protein AED:0.03 eAED:0.03 QI:147|1|1|1|0.66|0.75|4|396|498; (*GB) gi|224130646|ref|XP_002328341.1| (e_value=5e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT4G12540.1 (e_value=2e-48) | Symbols: | unknown protein; Has 29 Blast hits to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7429876-7431602 REVERSE LENGTH=461;; (*ITAG) Solyc12g044620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45107549-45111023 transcript_region:SL2.40ch12:45107549..45111023- functional_description:"cDNA clone J065196H20 full insert sequence (AHRD V1 ***- B7F8Z2_ORYSJ)"; NbS00005496g0008.1 protein AED:0.23 eAED:0.24 QI:0|1|0.33|1|1|1|3|0|345; (*GB) gi|225442479|ref|XP_002283785.1| (e_value=3e-89) PREDICTED: uncharacterized protein LOC100241227 [Vitis vinifera];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-11) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G16350.1 (e_value=1e-61) | Symbols: | Homeodomain-like superfamily protein | chr3:5547828-5549397 FORWARD LENGTH=387;; (*ITAG) Solyc12g044610.1.1 (e_value=7e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45095805-45103315 transcript_region:SL2.40ch12:45095805..45103315- go_terms:GO:0003677,GO:0008270 functional_description:"Myb transcription factor (AHRD V1 ***- B1Q4U5_9ROSI); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677,GO:0008270 NbS00016189g0003.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.71|0.62|8|617|358; (*GB) gi|158147058|gb|ABW22630.1| (e_value=1e-149) bHLH transcription factor Upa20 [Capsicum annuum];; (*SWP) sp|Q93W88|BH137_ARATH (e_value=2e-53) Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1;; (*TAIR) AT5G50915.2 (e_value=1e-54) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:20710764-20712252 REVERSE LENGTH=286;; (*ITAG) Solyc03g097820.1.1 (e_value=9e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53591976-53594125 transcript_region:SL2.40ch03:53591976..53594125- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00005524g0004.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|0|0.5|2|0|147; (*GB) gi|311893231|dbj|BAJ25787.1| (e_value=3e-86) putative PR-10 type pathogenesis-related protein [Nicotiana tabacum];; (*SWP) sp|P85524|KIRO_ACTDE (e_value=3e-36) Kirola OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT1G70880.1 (e_value=2e-29) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:26723086-26723717 REVERSE LENGTH=159;; (*ITAG) Solyc04g007750.2.1 (e_value=1e-59) genomic_reference:SL2.40ch04 gene_region:1429473-1430430 transcript_region:SL2.40ch04:1429473..1430430+ go_terms:GO:0009607 functional_description:"Major latex-like protein (AHRD V1 **-- B5THI3_PANGI); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00018918g0016.1 protein AED:0.16 eAED:0.16 QI:22|1|1|1|0.75|1|5|410|389; (*GB) gi|37625023|gb|AAQ96335.1| (e_value=0.0) ribosomal protein L3A [Nicotiana tabacum];; (*SWP) sp|P35684|RL3_ORYSJ (e_value=0.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G61580.1 (e_value=0.0) | Symbols: RPL3B, ARP2 | R-protein L3 B | chr1:22720833-22722402 REVERSE LENGTH=390;; (*ITAG) Solyc01g104590.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84802263-84805701 transcript_region:SL2.40ch01:84802263..84805701- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3 (AHRD V1 ***- Q6SKP4_SOLLC); contains Interpro domain(s) IPR019926 Ribosomal protein L3, conserved site IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00018918g0007.1 protein AED:0.24 eAED:0.31 QI:0|0.5|0.2|1|1|1|5|0|556; (*GB) gi|225455018|ref|XP_002279662.1| (e_value=1e-132) PREDICTED: kinetochore protein NDC80 homolog [Vitis vinifera];; (*TAIR) AT3G54630.1 (e_value=1e-103) | Symbols: | CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). | chr3:20221195-20222901 REVERSE LENGTH=568;; (*ITAG) Solyc01g104570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84791751-84795927 transcript_region:SL2.40ch01:84791751..84795927- functional_description:"Kinetochore protein ndc80 (AHRD V1 *-*- B6K5V0_SCHJY); contains Interpro domain(s) IPR005550 Kinetochore protein Ndc80 "; NbS00018918g0015.1 protein AED:0.13 eAED:0.18 QI:0|0.5|0.33|1|0.5|0.33|3|277|238; (*GB) gi|225447781|ref|XP_002265790.1| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100267543 [Vitis vinifera];; (*TAIR) AT2G01080.1 (e_value=3e-62) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:78038-79176 FORWARD LENGTH=231;; (*ITAG) Solyc01g104580.2.1 (e_value=3e-92) genomic_reference:SL2.40ch01 gene_region:84798176-84801154 transcript_region:SL2.40ch01:84798176..84801154+ functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 ***- Q10NQ5_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00026746g0003.1 protein AED:0.10 eAED:0.10 QI:280|1|1|1|0.33|0.25|4|396|327; (*GB) gi|37572443|dbj|BAC98491.1| (e_value=1e-162) AG-motif binding protein-1 [Nicotiana tabacum];; (*SWP) sp|Q9SV30|GATA8_ARATH (e_value=4e-38) GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1;; (*TAIR) AT3G54810.1 (e_value=3e-39) | Symbols: BME3-ZF, BME3, GATA8 | Plant-specific GATA-type zinc finger transcription factor family protein | chr3:20296957-20298236 FORWARD LENGTH=322;; (*ITAG) Solyc05g056120.2.1 (e_value=2e-149) genomic_reference:SL2.40ch05 gene_region:64658159-64662581 transcript_region:SL2.40ch05:64658159..64662581- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 1 (AHRD V1 *-*- Q0WTQ5_ARATH); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00025117g0017.1 protein AED:0.12 eAED:0.12 QI:0|1|0.33|1|1|1|3|0|236; (*GB) gi|170300|gb|AAA34101.1| (e_value=7e-159) peroxidase [Nicotiana tabacum];; (*SWP) sp|P11965|PERX_TOBAC (e_value=2e-159) Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G06720.1 (e_value=5e-104) | Symbols: ATPA2, PA2 | peroxidase 2 | chr5:2077567-2078857 REVERSE LENGTH=335;; (*ITAG) Solyc01g006300.2.1 (e_value=1e-139) genomic_reference:SL2.40ch01 gene_region:888896-891747 transcript_region:SL2.40ch01:888896..891747- go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43774_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00025117g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|255565639|ref|XP_002523809.1| (e_value=1e-72) Ferredoxin-3, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|P27788|FER3_MAIZE (e_value=1e-58) Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1;; (*TAIR) AT2G27510.1 (e_value=7e-56) | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281-11758748 REVERSE LENGTH=155;; (*ITAG) Solyc11g068430.1.1 (e_value=3e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50238130-50238504 transcript_region:SL2.40ch11:50238130..50238504+ go_terms:GO:0009055,GO:0051536,GO:0022900 functional_description:"Ferredoxin (AHRD V1 ***- Q9AUE1_IMPBA); contains Interpro domain(s) IPR010241 Ferredoxin [2Fe-2S], plant "; GO:0009055,GO:0051536,GO:0022900 NbS00025117g0020.1 protein AED:0.13 eAED:0.17 QI:0|0|0|0.75|0.33|0.25|4|0|252; (*GB) gi|125596432|gb|EAZ36212.1| (e_value=1e-70) hypothetical protein OsJ_20530 [Oryza sativa Japonica Group];; (*TAIR) AT5G06700.1 (e_value=8e-67) | Symbols: TBR | Plant protein of unknown function (DUF828) | chr5:2063638-2065810 FORWARD LENGTH=608;; (*ITAG) Solyc01g016380.2.1 (e_value=3e-96) genomic_reference:SL2.40ch01 gene_region:19474845-19476882 transcript_region:SL2.40ch01:19474845..19476882- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00025117g0010.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|104; (*GB) gi|45935133|gb|AAS79591.1| (e_value=2e-55) putative dihydroflavonol reductase [Ipomoea trifida];; (*TAIR) AT1G08200.1 (e_value=6e-51) | Symbols: AXS2 | UDP-D-apiose/UDP-D-xylose synthase 2 | chr1:2574259-2576609 REVERSE LENGTH=389;; (*ITAG) Solyc11g066720.1.1 (e_value=1e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49591441-49595951 transcript_region:SL2.40ch11:49591441..49595951+ go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance arnA protein (AHRD V1 ***- B6TQB1_MAIZE); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0044237,GO:0008152 NbS00018035g0004.1 protein AED:0.04 eAED:0.04 QI:247|1|1|1|0.81|0.91|12|285|359; (*GB) gi|225454375|ref|XP_002278854.1| (e_value=2e-180) PREDICTED: diacylglycerol kinase-like [Vitis vinifera];; (*SWP) sp|O53526|DAGK_MYCTU (e_value=6e-21) Diacylglycerol kinase OS=Mycobacterium tuberculosis GN=dagK PE=1 SV=1;; (*TAIR) AT2G46090.1 (e_value=9e-168) | Symbols: | Diacylglycerol kinase family protein | chr2:18950919-18953079 FORWARD LENGTH=364;; (*ITAG) Solyc01g095010.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78137784-78143016 transcript_region:SL2.40ch01:78137784..78143016- go_terms:GO:0017050 functional_description:"Diacylglycerol kinase catalytic region (AHRD V1 **** D0LGX1_HALO1); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00018572g0009.1 protein AED:0.24 eAED:0.24 QI:0|0.37|0.11|1|0.62|0.33|9|0|834; (*GB) gi|224098126|ref|XP_002311123.1| (e_value=0.0) pseudo response regulator [Populus trichocarpa];; (*SWP) sp|A2YQ93|PRR37_ORYSI (e_value=7e-99) Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2;; (*TAIR) AT5G02810.1 (e_value=5e-86) | Symbols: PRR7, APRR7 | pseudo-response regulator 7 | chr5:638283-641461 REVERSE LENGTH=727;; (*ITAG) Solyc04g049670.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:41997358-42004019 transcript_region:SL2.40ch04:41997358..42004019- go_terms:GO:0016564 functional_description:"Pseudo response regulator (AHRD V1 ***- B9HM08_POPTR); contains Interpro domain(s) IPR010402 CCT domain "; GO:0016564 NbS00004742g0014.1 protein AED:0.15 eAED:0.15 QI:311|1|1|1|0.66|0.42|7|365|327; (*GB) gi|359493159|ref|XP_003634527.1| (e_value=7e-176) PREDICTED: UDP-galactose transporter 2-like [Vitis vinifera];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=2e-85) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT1G34020.1 (e_value=6e-172) | Symbols: | Nucleotide-sugar transporter family protein | chr1:12367359-12368965 FORWARD LENGTH=335;; (*ITAG) Solyc12g056640.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47981106-47984376 transcript_region:SL2.40ch12:47981106..47984376+ functional_description:"Integral membrane protein like (AHRD V1 ***- B6TS40_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00004742g0021.1 protein AED:0.09 eAED:0.18 QI:0|0|0|0.72|0.1|0.18|11|0|1182; (*GB) gi|255572297|ref|XP_002527087.1| (e_value=0.0) Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis];; (*SWP) sp|C0LGF5|Y1341_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2;; (*TAIR) AT1G34110.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:12417331-12421246 REVERSE LENGTH=1072;; (*ITAG) Solyc12g056730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48170555-48174218 transcript_region:SL2.40ch12:48170555..48174218+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00004742g0024.1 protein AED:0.05 eAED:0.05 QI:0|1|0.77|1|0.87|0.88|9|0|627; (*GB) gi|225463083|ref|XP_002263640.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera];; (*SWP) sp|Q56X76|RH39_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2;; (*TAIR) AT4G09730.1 (e_value=0.0) | Symbols: RH39 | RH39 | chr4:6136333-6139510 FORWARD LENGTH=621;; (*ITAG) Solyc12g056740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48175106-48181151 transcript_region:SL2.40ch12:48175106..48181151- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- D3BPQ9_POLPA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00004742g0022.1 protein AED:0.10 eAED:0.12 QI:0|0.42|0.37|1|0.42|0.37|8|0|677; (*GB) gi|328835772|dbj|BAK19067.1| (e_value=0.0) GIGANTEA [Ipomoea nil];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=0.0) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=0.0) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc12g056650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47985938-47998455 transcript_region:SL2.40ch12:47985938..47998455- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 2"; GO:0005515 NbS00004742g0018.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|134; (*GB) gi|224085197|ref|XP_002307516.1| (e_value=5e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=1e-24) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=9e-26) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc04g071990.2.1 (e_value=2e-27) genomic_reference:SL2.40ch04 gene_region:56606549-56648468 transcript_region:SL2.40ch04:56606549..56648468- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 1"; GO:0005515 NbS00018408g0002.1 protein AED:0.30 eAED:0.30 QI:0|1|0.6|1|1|1|5|0|518; (*GB) gi|224142065|ref|XP_002324379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJA2|CSLC8_ARATH (e_value=0.0) Probable xyloglucan glycosyltransferase 8 OS=Arabidopsis thaliana GN=CSLC8 PE=2 SV=1;; (*TAIR) AT2G24630.1 (e_value=0.0) | Symbols: ATCSLC08, CSLC08, ATCSLC8 | Glycosyl transferase family 2 protein | chr2:10471558-10473984 REVERSE LENGTH=690;; (*ITAG) Solyc08g006310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:974337-978244 transcript_region:SL2.40ch08:974337..978244+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **-* D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00018408g0001.1 protein AED:0.46 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|224089489|ref|XP_002308730.1| (e_value=7e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SB75|CSLC5_ARATH (e_value=1e-44) Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1;; (*TAIR) AT4G31590.1 (e_value=9e-46) | Symbols: ATCSLC05, CSLC05, ATCSLC5, CSLC5 | Cellulose-synthase-like C5 | chr4:15309889-15312336 REVERSE LENGTH=692;; (*ITAG) Solyc08g006310.2.1 (e_value=1e-58) genomic_reference:SL2.40ch08 gene_region:974337-978244 transcript_region:SL2.40ch08:974337..978244+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **-* D8T077_SELML); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0016759 NbS00018408g0006.1 protein AED:0.60 eAED:0.78 QI:0|0|0.33|0.66|0|0.33|3|0|62 NbS00032206g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|647; (*GB) gi|225451887|ref|XP_002278999.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M891|PP208_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1;; (*TAIR) AT3G02490.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:513607-515604 FORWARD LENGTH=665;; (*ITAG) Solyc03g112190.2.1 (e_value=1e-108) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031697g0009.1 protein AED:0.27 eAED:0.28 QI:542|1|0.5|1|1|1|4|0|310; (*GB) gi|147787325|emb|CAN77990.1| (e_value=1e-71) hypothetical protein VITISV_037732 [Vitis vinifera];; (*TAIR) AT1G61215.1 (e_value=1e-53) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475;; (*ITAG) Solyc02g078810.2.1 (e_value=1e-144) genomic_reference:SL2.40ch02 gene_region:38041787-38045657 transcript_region:SL2.40ch02:38041787..38045657+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9H245_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00031697g0010.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|276; (*GB) gi|356557662|ref|XP_003547134.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100804245 [Glycine max];; (*TAIR) AT1G61215.1 (e_value=2e-31) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475;; (*ITAG) Solyc02g078810.2.1 (e_value=3e-90) genomic_reference:SL2.40ch02 gene_region:38041787-38045657 transcript_region:SL2.40ch02:38041787..38045657+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9H245_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00039736g0001.1 protein AED:0.14 eAED:0.14 QI:360|1|0.75|1|0.33|0.5|4|0|440; (*GB) gi|255552710|ref|XP_002517398.1| (e_value=6e-99) hypothetical protein RCOM_0852460 [Ricinus communis];; (*TAIR) AT5G14930.2 (e_value=5e-37) | Symbols: SAG101 | senescence-associated gene 101 | chr5:4828754-4830769 FORWARD LENGTH=537;; (*ITAG) Solyc02g067660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32373203-32376055 transcript_region:SL2.40ch02:32373203..32376055- go_terms:GO:0006629 functional_description:"Phytoalexin deficient 4 (Fragment) (AHRD V1 **-- B2BDV5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00039736g0008.1 protein AED:0.41 eAED:0.43 QI:0|0|0|1|0|0|2|0|140; (*GB) gi|224109964|ref|XP_002333172.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G14930.2 (e_value=1e-11) | Symbols: SAG101 | senescence-associated gene 101 | chr5:4828754-4830769 FORWARD LENGTH=537;; (*ITAG) Solyc02g067660.2.1 (e_value=4e-48) genomic_reference:SL2.40ch02 gene_region:32373203-32376055 transcript_region:SL2.40ch02:32373203..32376055- go_terms:GO:0006629 functional_description:"Phytoalexin deficient 4 (Fragment) (AHRD V1 **-- B2BDV5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00027392g0002.1 protein AED:0.35 eAED:0.35 QI:26|1|1|1|0|0.25|4|45|85; (*GB) gi|296086723|emb|CBI32358.3| (e_value=5e-22) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64980.1 (e_value=3e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25960947-25963000 REVERSE LENGTH=344;; (*ITAG) Solyc09g064920.2.1 (e_value=2e-40) genomic_reference:SL2.40ch09 gene_region:58041266-58046595 transcript_region:SL2.40ch09:58041266..58046595- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00028512g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|110; (*GB) gi|297835254|ref|XP_002885509.1| (e_value=3e-48) hypothetical protein ARALYDRAFT_898730 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G22540.1 (e_value=4e-50) | Symbols: | Protein of unknown function (DUF1677) | chr3:7984233-7984565 REVERSE LENGTH=110;; (*ITAG) Solyc06g054130.1.1 (e_value=4e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33448237-33448575 transcript_region:SL2.40ch06:33448237..33448575+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012876 Protein of unknown function DUF1677, plant "; NbS00028512g0001.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|2|0|72 NbS00024322g0009.1 protein AED:0.33 eAED:0.33 QI:44|0.5|0.72|1|0.8|0.72|11|210|881; (*GB) gi|296087190|emb|CBI33564.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84K34|SIL10_ARATH (e_value=1e-39) E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1;; (*TAIR) AT5G37930.1 (e_value=7e-41) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr5:15102239-15103651 REVERSE LENGTH=349;; (*ITAG) Solyc03g043600.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:11064090-11069228 transcript_region:SL2.40ch03:11064090..11069228+ go_terms:GO:0016567,GO:0005634,GO:0008270 functional_description:"E3 ubiquitin-protein ligase SINA-like 10 (AHRD V1 *-*- SIL10_ARATH); contains Interpro domain(s) IPR018121 Seven in absentia protein, TRAF-like domain "; GO:0016567,GO:0005634,GO:0008270 NbS00039758g0008.1 protein AED:0.10 eAED:0.10 QI:269|0.80|0.77|1|0.88|0.88|27|0|974; (*GB) gi|224080003|ref|XP_002305988.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VR59|VIP1_DROME (e_value=1e-153) Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase OS=Drosophila melanogaster GN=l(1)G0196 PE=1 SV=2;; (*TAIR) AT5G15070.1 (e_value=0.0) | Symbols: | Phosphoglycerate mutase-like family protein | chr5:4876898-4885615 FORWARD LENGTH=1049;; (*ITAG) Solyc02g087620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44563220-44582860 transcript_region:SL2.40ch02:44563220..44582860+ go_terms:GO:0033187 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (AHRD V1 **-* VIP2_MOUSE); contains Interpro domain(s) IPR000560 Histidine acid phosphatase "; GO:0033187 NbS00002117g0011.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|0.66|0.75|4|261|424; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-38) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-39) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g010360.1.1 (e_value=4e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00002117g0010.1 protein AED:0.15 eAED:0.15 QI:207|1|1|1|0.78|0.93|15|377|384; (*GB) gi|224062667|ref|XP_002300870.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SHJ8|HIBC8_ARATH (e_value=0.0) 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2;; (*TAIR) AT1G06550.1 (e_value=0.0) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr1:2003834-2006564 REVERSE LENGTH=387;; (*ITAG) Solyc12g011160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4008070-4012664 transcript_region:SL2.40ch12:4008070..4012664+ go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00002117g0001.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|111; (*ITAG) Solyc07g056180.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61360115-61361360 transcript_region:SL2.40ch07:61360115..61361360- functional_description:"NBS-LRR class disease resistance protein (AHRD V1 ---- D5L9G3_ORYSJ)"; NbS00002117g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.33|1|1|3|0|97 NbS00028927g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|165; (*GB) gi|225462524|ref|XP_002265932.1| (e_value=2e-57) PREDICTED: auxin-induced protein 6B-like [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=1e-15) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G20810.1 (e_value=1e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr5:7044791-7045555 FORWARD LENGTH=165;; (*ITAG) Solyc05g046320.1.1 (e_value=3e-75) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:57696745-57697263 transcript_region:SL2.40ch05:57696745..57697263- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00058388g0003.1 protein AED:0.26 eAED:0.26 QI:19|1|0.66|1|1|1|3|340|169; (*GB) gi|255550888|ref|XP_002516492.1| (e_value=5e-52) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G32820.1 (e_value=1e-51) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15831679-15841454 REVERSE LENGTH=1863;; (*ITAG) Solyc08g066010.2.1 (e_value=8e-62) genomic_reference:SL2.40ch08 gene_region:51662840-51674313 transcript_region:SL2.40ch08:51662840..51674313- go_terms:GO:0005488 functional_description:"Binding protein (AHRD V1 ***- D7M9N9_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00026063g0019.1 protein AED:0.11 eAED:0.13 QI:0|1|0.5|1|1|1|6|0|403; (*GB) gi|224113283|ref|XP_002316445.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G51630.1 (e_value=3e-180) | Symbols: | O-fucosyltransferase family protein | chr1:19142141-19144082 REVERSE LENGTH=423;; (*ITAG) Solyc06g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36331992-36336504 transcript_region:SL2.40ch06:36331992..36336504+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00026063g0013.1 protein AED:0.27 eAED:0.30 QI:35|0.57|0.75|1|0.14|0.5|8|539|293; (*GB) gi|356538807|ref|XP_003537892.1| (e_value=8e-98) PREDICTED: uncharacterized protein LOC100802747 [Glycine max];; (*SWP) sp|Q9CR08|RPP29_MOUSE (e_value=9e-18) Ribonuclease P protein subunit p29 OS=Mus musculus GN=Pop4 PE=2 SV=1;; (*TAIR) AT2G43190.2 (e_value=9e-73) | Symbols: | ribonuclease P family protein | chr2:17956220-17957833 FORWARD LENGTH=295;; (*ITAG) Solyc09g007370.2.1 (e_value=2e-148) genomic_reference:SL2.40ch09 gene_region:965176-969869 transcript_region:SL2.40ch09:965176..969869- go_terms:GO:0005655,GO:0030677 functional_description:"Ribonuclease P protein subunit p29 (AHRD V1 *-*- C1BL44_OSMMO); contains Interpro domain(s) IPR016848 Ribonuclease P/MRP, p29 subunit, eukaryotic "; GO:0005655,GO:0030677 NbS00026063g0002.1 protein AED:0.22 eAED:0.23 QI:0|0.8|0.83|1|1|1|31|381|996; (*GB) gi|359483154|ref|XP_002275074.2| (e_value=0.0) PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LU41|ACA9_ARATH (e_value=0.0) Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2;; (*TAIR) AT3G21180.1 (e_value=0.0) | Symbols: ACA9, ATACA9 | autoinhibited Ca(2+)-ATPase 9 | chr3:7425770-7431941 FORWARD LENGTH=1086;; (*ITAG) Solyc03g123890.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64626300-64643322 transcript_region:SL2.40ch03:64626300..64643322- go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00026063g0007.1 protein AED:0.44 eAED:0.54 QI:0|0|0|1|1|1|2|0|119; (*GB) gi|168052345|ref|XP_001778611.1| (e_value=3e-16) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|O04450|TCPE_ARATH (e_value=1e-16) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.2 (e_value=8e-18) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8687660 REVERSE LENGTH=459;; (*ITAG) Solyc05g013990.2.1 (e_value=6e-18) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00039012g0002.1 protein AED:0.08 eAED:0.08 QI:288|0.87|0.88|1|0.75|0.55|9|1518|692; (*GB) gi|297850370|ref|XP_002893066.1| (e_value=0.0) hypothetical protein ARALYDRAFT_335228 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FXH6|CNGC8_ARATH (e_value=0.0) Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2;; (*TAIR) AT1G19780.1 (e_value=0.0) | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated channel 8 | chr1:6833885-6836578 REVERSE LENGTH=753;; (*ITAG) Solyc03g116850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60162079-60167174 transcript_region:SL2.40ch03:60162079..60167174- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00039012g0009.1 protein AED:0.05 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|435; (*GB) gi|356523255|ref|XP_003530256.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100799977 [Glycine max];; (*TAIR) AT4G37580.1 (e_value=2e-125) | Symbols: HLS1, COP3, UNS2 | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr4:17658932-17660564 FORWARD LENGTH=403;; (*ITAG) Solyc03g116860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60171574-60173502 transcript_region:SL2.40ch03:60171574..60173502- go_terms:GO:0008152 functional_description:"Acetyltransferase-like protein (AHRD V1 ***- Q7EYF5_ORYSJ); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00039012g0011.1 protein AED:0.17 eAED:0.17 QI:10|0.5|0|1|0.5|0|3|0|1113; (*GB) gi|225442904|ref|XP_002264123.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera];; (*SWP) sp|Q9LSB8|PP235_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2;; (*TAIR) AT3G15930.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:5387444-5389690 FORWARD LENGTH=687;; (*ITAG) Solyc03g116840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbS00039012g0006.1 protein AED:0.21 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|427; (*GB) gi|225448888|ref|XP_002263930.1| (e_value=1e-126) PREDICTED: uncharacterized protein LOC100241098 [Vitis vinifera];; (*TAIR) AT5G04460.2 (e_value=6e-105) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263502 FORWARD LENGTH=825;; (*ITAG) Solyc11g007910.1.1 (e_value=1e-158) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00028611g0001.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|238; (*GB) gi|296278604|gb|ADH04266.1| (e_value=2e-60) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=3e-19) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=2e-20) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090320.2.1 (e_value=6e-44) genomic_reference:SL2.40ch01 gene_region:75741119-75741760 transcript_region:SL2.40ch01:75741119..75741760- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00028678g0003.1 protein AED:0.25 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|359487259|ref|XP_003633549.1| (e_value=9e-110) PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vitis vinifera];; (*SWP) sp|Q00874|DR100_ARATH (e_value=5e-95) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT5G12940.1 (e_value=8e-101) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:4087782-4088897 FORWARD LENGTH=371;; (*ITAG) Solyc11g056680.1.1 (e_value=9e-106) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45139882-45140976 transcript_region:SL2.40ch11:45139882..45140976+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00028678g0013.1 protein AED:0.29 eAED:0.29 QI:548|0.77|0.7|1|0.55|0.6|10|0|517; (*GB) gi|255575782|ref|XP_002528790.1| (e_value=6e-101) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FT92|Y5843_ARATH (e_value=2e-62) Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2;; (*TAIR) AT5G08430.1 (e_value=1e-63) | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:2716974-2720095 FORWARD LENGTH=553;; (*ITAG) Solyc01g086940.2.1 (e_value=5e-135) genomic_reference:SL2.40ch01 gene_region:73610243-73625040 transcript_region:SL2.40ch01:73610243..73625040+ go_terms:GO:0005634 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 **-- C3H44_ARATH); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634 NbS00028678g0004.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|186; (*GB) gi|359487259|ref|XP_003633549.1| (e_value=1e-93) PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Vitis vinifera];; (*SWP) sp|Q00874|DR100_ARATH (e_value=1e-77) DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2;; (*TAIR) AT3G20820.1 (e_value=1e-81) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:7280930-7282027 FORWARD LENGTH=365;; (*ITAG) Solyc01g086920.2.1 (e_value=1e-102) genomic_reference:SL2.40ch01 gene_region:73587361-73588791 transcript_region:SL2.40ch01:73587361..73588791+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00028678g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|177; (*GB) gi|88866527|gb|ABD57310.1| (e_value=7e-95) stress-associated protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=3e-54) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=2e-55) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc01g086960.2.1 (e_value=1e-97) genomic_reference:SL2.40ch01 gene_region:73634863-73635936 transcript_region:SL2.40ch01:73634863..73635936- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00028678g0006.1 protein AED:0.29 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|480; (*GB) gi|359487354|ref|XP_003633574.1| (e_value=2e-85) PREDICTED: protein gamma response 1-like [Vitis vinifera];; (*SWP) sp|Q9ZRT1|GR1_ARATH (e_value=6e-30) Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2;; (*TAIR) AT3G52115.1 (e_value=5e-31) | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response gene 1 | chr3:19326333-19328245 FORWARD LENGTH=588;; (*ITAG) Solyc01g086930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73595473-73597921 transcript_region:SL2.40ch01:73595473..73597921- functional_description:"Gamma response I protein-like (AHRD V1 *--- Q69WX8_ORYSJ); contains Interpro domain(s) IPR013882 DNA repair protein Sae2/CtIP "; NbS00028678g0016.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.4|0.5|0.6|5|0|279; (*GB) gi|255544236|ref|XP_002513180.1| (e_value=1e-82) retinoblastoma binding protein, putative [Ricinus communis];; (*SWP) sp|Q9ZRT1|GR1_ARATH (e_value=3e-62) Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2;; (*TAIR) AT3G52115.1 (e_value=2e-63) | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response gene 1 | chr3:19326333-19328245 FORWARD LENGTH=588;; (*ITAG) Solyc01g086930.2.1 (e_value=5e-142) genomic_reference:SL2.40ch01 gene_region:73595473-73597921 transcript_region:SL2.40ch01:73595473..73597921- functional_description:"Gamma response I protein-like (AHRD V1 *--- Q69WX8_ORYSJ); contains Interpro domain(s) IPR013882 DNA repair protein Sae2/CtIP "; NbS00057094g0001.1 protein AED:0.00 eAED:0.00 QI:102|0|0.5|1|0|0.5|2|350|105; (*GB) gi|255561679|ref|XP_002521849.1| (e_value=6e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g108350.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:87454424-87455286 transcript_region:SL2.40ch01:87454424..87455286+ functional_description:"Copper ion binding protein (AHRD V1 **-- B6TG98_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00057094g0005.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|0|0|2|0|294; (*GB) gi|225428767|ref|XP_002285075.1| (e_value=3e-90) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9LMA7|CXE1_ARATH (e_value=1e-68) Probable carboxylesterase 1 OS=Arabidopsis thaliana GN=CXE1 PE=2 SV=1;; (*TAIR) AT1G19190.1 (e_value=8e-70) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:6623876-6624832 FORWARD LENGTH=318;; (*ITAG) Solyc01g108520.1.1 (e_value=3e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87586592-87587539 transcript_region:SL2.40ch01:87586592..87587539+ go_terms:GO:0004091 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOL6); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00017579g0010.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.66|3|512|218; (*GB) gi|224069670|ref|XP_002303019.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*TAIR) AT3G07470.1 (e_value=2e-50) | Symbols: | Protein of unknown function, DUF538 | chr3:2387291-2388343 REVERSE LENGTH=169;; (*ITAG) Solyc03g078160.2.1 (e_value=6e-93) genomic_reference:SL2.40ch03 gene_region:43694457-43696161 transcript_region:SL2.40ch03:43694457..43696161+ functional_description:"POT family domain containing protein expressed (AHRD V1 ***- D8L9H8_WHEAT); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00017579g0001.1 protein AED:0.42 eAED:0.49 QI:0|-1|0|1|-1|1|1|0|217; (*GB) gi|225427663|ref|XP_002274239.1| (e_value=5e-85) PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Vitis vinifera];; (*TAIR) AT1G31490.1 (e_value=9e-81) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:11271744-11273078 REVERSE LENGTH=444;; (*ITAG) Solyc03g078130.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43651797-43653398 transcript_region:SL2.40ch03:43651797..43653398+ go_terms:GO:0016747 functional_description:"Anthranilate N-benzoyltransferase protein 1 (AHRD V1 **-- HCBT1_DIACA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00017579g0011.1 protein AED:0.30 eAED:0.30 QI:0|0|0.33|1|0|0.33|3|767|124; (*ITAG) Solyc12g036600.1.1 (e_value=6e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:31773553-31775183 transcript_region:SL2.40ch12:31773553..31775183- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 *-*- NUOD_RICCK); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00017579g0013.1 protein AED:0.42 eAED:0.72 QI:0|0|0|1|0|0|3|0|152; (*GB) gi|57014017|ref|YP_173488.1| (e_value=4e-35) NADH dehydrogenase subunit 7 [Nicotiana tabacum];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-36) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=1e-32) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=7e-38) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00017579g0012.1 protein AED:0.46 eAED:0.59 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|166895611|ref|YP_001661405.1| (e_value=2e-20) NADH dehydrogenase subunit 7 [Cycas taitungensis];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=5e-21) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-21) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=4e-23) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00017614g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|80 NbS00009282g0006.1 protein AED:0.21 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|182 NbS00009282g0015.1 protein AED:0.26 eAED:0.26 QI:120|0.92|0.93|1|0.42|0.6|15|486|373; (*GB) gi|224079375|ref|XP_002305841.1| (e_value=2e-173) predicted protein [Populus trichocarpa];; (*SWP) sp|Q58DT8|WDR55_BOVIN (e_value=7e-58) WD repeat-containing protein 55 OS=Bos taurus GN=WDR55 PE=2 SV=1;; (*TAIR) AT2G34260.1 (e_value=7e-153) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:14465899-14468416 FORWARD LENGTH=353;; (*ITAG) Solyc02g038750.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22219831-22225637 transcript_region:SL2.40ch02:22219831..22225637- go_terms:GO:0016505,GO:0000166 functional_description:"WD repeat-containing protein 55 (AHRD V1 **-- C1BNG0_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0016505,GO:0000166 NbS00009282g0002.1 protein AED:0.12 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|0|580; (*GB) gi|224081457|ref|XP_002306417.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6GPJ5|LRC40_XENLA (e_value=5e-37) Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1;; (*TAIR) AT4G35470.1 (e_value=0.0) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc00g007300.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6935594-6938269 transcript_region:SL2.40ch00:6935594..6938269- go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00009282g0005.1 protein AED:0.23 eAED:0.23 QI:213|0.6|0.66|1|1|1|6|228|381; (*GB) gi|224126489|ref|XP_002329567.1| (e_value=4e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33620.4 (e_value=2e-38) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc02g038760.2.1 (e_value=7e-57) genomic_reference:SL2.40ch02 gene_region:22246946-22251700 transcript_region:SL2.40ch02:22246946..22251700+ go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 ***- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00009282g0016.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|0.33|0.25|4|0|331; (*GB) gi|12583687|dbj|BAB21492.1| (e_value=1e-116) beta-D-galactosidase [Pyrus pyrifolia];; (*SWP) sp|P48981|BGAL_MALDO (e_value=3e-117) Beta-galactosidase OS=Malus domestica PE=1 SV=1;; (*TAIR) AT4G36360.2 (e_value=7e-103) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=855;; (*ITAG) Solyc06g062580.2.1 (e_value=6e-109) genomic_reference:SL2.40ch06 gene_region:35886685-35893053 transcript_region:SL2.40ch06:35886685..35893053+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B2LYJ3_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00009282g0017.1 protein AED:0.34 eAED:0.56 QI:0|0|0|1|0.5|0.66|3|0|440; (*GB) gi|3299896|gb|AAC25984.1| (e_value=9e-160) beta-galactosidase [Solanum lycopersicum];; (*SWP) sp|P48981|BGAL_MALDO (e_value=1e-147) Beta-galactosidase OS=Malus domestica PE=1 SV=1;; (*TAIR) AT3G13750.1 (e_value=2e-142) | Symbols: BGAL1 | beta galactosidase 1 | chr3:4511192-4515756 FORWARD LENGTH=847;; (*ITAG) Solyc12g008840.1.1 (e_value=2e-162) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2183773-2190243 transcript_region:SL2.40ch12:2183773..2190243+ go_terms:GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- O81100_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005975 NbS00016045g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|267; (*GB) gi|3036955|dbj|BAA25396.1| (e_value=3e-180) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P07369|CB2G_SOLLC (e_value=0.0) Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=1e-162) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00016045g0013.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.85|0.66|0.57|7|0|569; (*GB) gi|115805|sp|P27495.1|CB24_TOBAC (e_value=2e-158) RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic; AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags: Precursor;; (*SWP) sp|P27495|CB24_TOBAC (e_value=7e-160) Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=9e-144) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=2e-160) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00016045g0014.1 protein AED:0.36 eAED:0.36 QI:0|0.66|0.5|1|0.33|0.5|4|87|232; (*GB) gi|77999301|gb|ABB16997.1| (e_value=4e-67) unknown [Solanum tuberosum];; (*SWP) sp|Q96F25|ALG14_HUMAN (e_value=4e-13) UDP-N-acetylglucosamine transferase subunit ALG14 homolog OS=Homo sapiens GN=ALG14 PE=2 SV=1;; (*TAIR) AT4G18230.1 (e_value=1e-52) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | chr4:10080521-10081710 REVERSE LENGTH=233;; (*ITAG) Solyc03g005800.2.1 (e_value=4e-69) genomic_reference:SL2.40ch03 gene_region:548122-550898 transcript_region:SL2.40ch03:548122..550898+ go_terms:GO:0043495,GO:0004577 functional_description:"UDP-N-acetylglucosamine transferase subunit ALG14 (AHRD V1 ***- B6U4N4_MAIZE); contains Interpro domain(s) IPR013969 Oligosaccharide biosynthesis protein Alg14 like "; GO:0043495,GO:0004577 NbS00016045g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.66|1|1|3|0|105; (*GB) gi|356566488|ref|XP_003551463.1| (e_value=3e-19) PREDICTED: probable purine permease 9-like [Glycine max];; (*SWP) sp|O49725|PUP10_ARATH (e_value=4e-19) Probable purine permease 10 OS=Arabidopsis thaliana GN=PUP10 PE=2 SV=2;; (*TAIR) AT4G18210.1 (e_value=3e-20) | Symbols: ATPUP10, PUP10 | purine permease 10 | chr4:10076175-10077495 FORWARD LENGTH=390;; (*ITAG) Solyc02g071110.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:35169375-35173055 transcript_region:SL2.40ch02:35169375..35173055- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00025601g0003.1 protein AED:0.08 eAED:0.08 QI:312|1|0.5|1|1|1|4|0|765; (*GB) gi|225439372|ref|XP_002270072.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254761 isoform 1 [Vitis vinifera];; (*TAIR) AT3G11760.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3718529-3721123 FORWARD LENGTH=702;; (*ITAG) Solyc04g009790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3090794-3100196 transcript_region:SL2.40ch04:3090794..3100196- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0016020 NbS00040439g0003.1 protein AED:0.43 eAED:0.43 QI:67|0|0.66|1|0|0.33|3|62|177; (*GB) gi|224116922|ref|XP_002331847.1| (e_value=7e-25) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|O82503|CRF1_ARATH (e_value=2e-20) Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1;; (*TAIR) AT4G11140.1 (e_value=1e-21) | Symbols: CRF1 | cytokinin response factor 1 | chr4:6794930-6795793 REVERSE LENGTH=287;; (*ITAG) Solyc01g008890.2.1 (e_value=4e-48) genomic_reference:SL2.40ch01 gene_region:2910164-2911724 transcript_region:SL2.40ch01:2910164..2911724- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00040439g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.75|1|0.57|0.62|8|339|448; (*GB) gi|225424574|ref|XP_002282104.1| (e_value=2e-170) PREDICTED: putative 1-aminocyclopropane-1-carboxylate deaminase-like [Vitis vinifera];; (*TAIR) AT3G26115.1 (e_value=1e-161) | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr3:9542301-9544246 FORWARD LENGTH=427;; (*ITAG) Solyc01g008900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2920931-2926342 transcript_region:SL2.40ch01:2920931..2926342+ go_terms:GO:0008152 functional_description:"Genomic DNA chromosome 3 P1 clone MJL14 (AHRD V1 **-- Q9LJG2_ARATH); contains Interpro domain(s) IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit "; GO:0008152 NbS00040439g0013.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0|0|2|0|334; (*GB) gi|47824946|gb|AAT38720.1| (e_value=5e-63) Putative F-Box protein, identical [Solanum demissum];; (*SWP) sp|Q9LIR8|FBK67_ARATH (e_value=8e-34) F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1;; (*TAIR) AT3G23880.1 (e_value=6e-35) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc09g091710.1.1 (e_value=2e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00005997g0012.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|0.2|0.33|6|0|306; (*GB) gi|297738233|emb|CBI27434.3| (e_value=5e-21) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g011540.1.1 (e_value=1e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00005997g0005.1 protein AED:0.35 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|283; (*GB) gi|124359796|gb|ABD33026.2| (e_value=7e-17) Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula]; NbS00001750g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|3|0|326; (*GB) gi|225430856|ref|XP_002269123.1| (e_value=1e-124) PREDICTED: uncharacterized protein LOC100251398 [Vitis vinifera];; (*TAIR) AT2G23790.1 (e_value=2e-107) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc03g044960.1.1 (e_value=1e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:15110103-15111400 transcript_region:SL2.40ch03:15110103..15111400- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00006306g0012.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0.6|0.5|6|320|425; (*GB) gi|359485671|ref|XP_002274384.2| (e_value=2e-127) PREDICTED: putative zinc finger protein CONSTANS-LIKE 11-like [Vitis vinifera];; (*SWP) sp|Q9LJ44|COL12_ARATH (e_value=6e-94) Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2;; (*TAIR) AT3G21880.1 (e_value=5e-95) | Symbols: | B-box type zinc finger protein with CCT domain | chr3:7706748-7708093 FORWARD LENGTH=364;; (*ITAG) Solyc05g046040.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:57316966-57319191 transcript_region:SL2.40ch05:57316966..57319191+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00006306g0011.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.33|1|0.5|0.33|3|0|467; (*GB) gi|255549331|ref|XP_002515719.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT1G05280.1 (e_value=1e-156) | Symbols: | Protein of unknown function (DUF604) | chr1:1535444-1537414 REVERSE LENGTH=461;; (*ITAG) Solyc05g046110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:57396337-57399553 transcript_region:SL2.40ch05:57396337..57399553+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00019965g0003.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.61|1|0.83|0.84|13|0|1529; (*GB) gi|225437959|ref|XP_002269589.1| (e_value=0.0) PREDICTED: ABC transporter C family member 5-like [Vitis vinifera];; (*SWP) sp|Q7GB25|AB5C_ARATH (e_value=0.0) ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2;; (*TAIR) AT1G04120.1 (e_value=0.0) | Symbols: ATMRP5, MRP5, ATABCC5, ABCC5 | multidrug resistance-associated protein 5 | chr1:1064848-1070396 REVERSE LENGTH=1514;; (*ITAG) Solyc09g064440.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57309683-57320332 transcript_region:SL2.40ch09:57309683..57320332+ go_terms:GO:0015431 functional_description:"ABC transporter C family member 5 (AHRD V1 **-- AB5C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00022035g0002.1 protein AED:0.34 eAED:0.34 QI:559|1|0.83|1|0|0.16|6|0|227; (*GB) gi|15240824|ref|NP_198619.1| (e_value=4e-92) mate efflux domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=3e-58) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT5G38030.1 (e_value=1e-94) | Symbols: | MATE efflux family protein | chr5:15171486-15175302 REVERSE LENGTH=498;; (*ITAG) Solyc05g013470.2.1 (e_value=1e-99) genomic_reference:SL2.40ch05 gene_region:6680451-6685550 transcript_region:SL2.40ch05:6680451..6685550+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00022035g0015.1 protein AED:0.33 eAED:0.41 QI:0|0.75|0.4|1|0.75|0.6|5|507|402; (*GB) gi|255574005|ref|XP_002527920.1| (e_value=4e-160) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94C27|FB84_ARATH (e_value=6e-136) F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1;; (*TAIR) AT1G70590.1 (e_value=4e-137) | Symbols: | F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351;; (*ITAG) Solyc01g007930.2.1 (e_value=1e-173) genomic_reference:SL2.40ch01 gene_region:2117825-2120595 transcript_region:SL2.40ch01:2117825..2120595- go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *-*- A5GBQ0_GEOUR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022035g0004.1 protein AED:0.09 eAED:0.09 QI:171|1|0.88|1|0.87|0.66|9|1864|338; (*GB) gi|350537933|ref|NP_001234574.1| (e_value=0.0) succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [Solanum lycopersicum];; (*SWP) sp|Q6DQL1|SUCA2_SOLLC (e_value=0.0) Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*TAIR) AT5G23250.1 (e_value=0.0) | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341;; (*ITAG) Solyc02g005350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2285566-2310956 transcript_region:SL2.40ch02:2285566..2310956- go_terms:GO:0005507 functional_description:"Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit "; GO:0005507 NbS00031961g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|163; (*GB) gi|48209896|gb|AAT40490.1| (e_value=8e-92) EF hand family protein [Solanum demissum];; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=4e-86) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=3e-87) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc03g083520.2.1 (e_value=5e-95) genomic_reference:SL2.40ch03 gene_region:47010674-47015134 transcript_region:SL2.40ch03:47010674..47015134+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00032721g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|786; (*GB) gi|224127486|ref|XP_002320086.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT1G01900.1 (e_value=0.0) | Symbols: ATSBT1.1, SBTI1.1 | subtilase family protein | chr1:310332-313011 FORWARD LENGTH=774;; (*ITAG) Solyc01g091920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77214251-77216739 transcript_region:SL2.40ch01:77214251..77216739- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00034796g0005.1 protein AED:0.25 eAED:0.30 QI:23|0|0.16|1|0.4|0.5|6|228|326; (*GB) gi|297738233|emb|CBI27434.3| (e_value=4e-47) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-26) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-27) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc08g041670.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:26547867-26549349 transcript_region:SL2.40ch08:26547867..26549349+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR013596 FBD "; NbS00004555g0003.1 protein AED:0.05 eAED:0.24 QI:0|0|0|1|1|1|2|0|149; (*ITAG) Solyc02g077870.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:37286482-37286907 transcript_region:SL2.40ch02:37286482..37286907- functional_description:"Unknown Protein (AHRD V1)"; NbS00004555g0007.1 protein AED:0.40 eAED:0.40 QI:0|0.57|0.37|1|0.28|0.37|8|0|309; (*GB) gi|111183161|gb|ABH07898.1| (e_value=1e-146) leucine-rich repeat family protein [Solanum lycopersicum];; (*SWP) sp|C0LGG3|Y5182_ARATH (e_value=3e-18) Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1;; (*TAIR) AT1G28340.1 (e_value=2e-112) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc02g077850.2.1 (e_value=2e-152) genomic_reference:SL2.40ch02 gene_region:37272195-37278625 transcript_region:SL2.40ch02:37272195..37278625- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004555g0006.1 protein AED:0.58 eAED:0.69 QI:0|0|0|0.66|0.6|0.5|6|0|277; (*GB) gi|111183161|gb|ABH07898.1| (e_value=5e-73) leucine-rich repeat family protein [Solanum lycopersicum];; (*TAIR) AT1G28340.1 (e_value=9e-55) | Symbols: AtRLP4, RLP4 | receptor like protein 4 | chr1:9940175-9943252 FORWARD LENGTH=626;; (*ITAG) Solyc02g077850.2.1 (e_value=1e-75) genomic_reference:SL2.40ch02 gene_region:37272195-37278625 transcript_region:SL2.40ch02:37272195..37278625- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00006588g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|139; (*GB) gi|296082244|emb|CBI21249.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFY3|VAS_ARATH (e_value=1e-29) Lipid transfer-like protein VAS OS=Arabidopsis thaliana GN=VAS PE=2 SV=1;; (*TAIR) AT5G13900.1 (e_value=9e-31) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:4481346-4481876 REVERSE LENGTH=151;; (*ITAG) Solyc01g103060.2.1 (e_value=5e-44) genomic_reference:SL2.40ch01 gene_region:83504324-83505106 transcript_region:SL2.40ch01:83504324..83505106+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RGU5_RICCO); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0006869 NbS00035635g0005.1 protein AED:0.13 eAED:0.15 QI:0|0.75|0.4|0.8|0.75|0.6|5|0|223; (*GB) gi|37050896|emb|CAE47557.1| (e_value=7e-137) seven-transmembrane-domain protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9FM10|SWET5_ARATH (e_value=3e-99) Bidirectional sugar transporter SWEET5 OS=Arabidopsis thaliana GN=SWEET5 PE=2 SV=2;; (*TAIR) AT5G62850.1 (e_value=2e-100) | Symbols: AtVEX1, SWEET5, AtSWEET5 | Nodulin MtN3 family protein | chr5:25230204-25231527 REVERSE LENGTH=240;; (*ITAG) Solyc06g071400.2.1 (e_value=1e-139) genomic_reference:SL2.40ch06 gene_region:40318689-40320251 transcript_region:SL2.40ch06:40318689..40320251+ go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_CAEBR); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00035635g0006.1 protein AED:0.21 eAED:0.22 QI:319|1|0.33|1|0.5|0.33|3|0|74; (*GB) gi|282935440|gb|ADB03785.1| (e_value=2e-13) deleted in split hand/splt foot protein 1 [Ipomoea batatas]; NbS00042833g0001.1 protein AED:0.01 eAED:0.04 QI:37|0|0.5|1|0|0.5|2|0|122 NbS00042833g0013.1 protein AED:0.11 eAED:0.11 QI:40|1|1|1|1|1|6|430|256; (*GB) gi|363806926|ref|NP_001242306.1| (e_value=2e-124) uncharacterized protein LOC100820330 [Glycine max];; (*SWP) sp|P32438|YPOL_THETH (e_value=2e-32) IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus PE=3 SV=1;; (*TAIR) AT4G38090.1 (e_value=4e-110) | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr4:17883757-17884702 REVERSE LENGTH=234;; (*ITAG) Solyc11g010510.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3569232-3571588 transcript_region:SL2.40ch11:3569232..3571588+ functional_description:"Thymidylate synthase (Fragment) (AHRD V1 **-- C3WJ73_9FUSO); contains Interpro domain(s) IPR001498 Uncharacterised protein family UPF0029, N-terminal "; NbS00042833g0012.1 protein AED:0.13 eAED:0.11 QI:923|0.95|0.86|1|0.90|0.81|22|326|978; (*GB) gi|255545918|ref|XP_002514019.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24610.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). | chr4:12700837-12707899 REVERSE LENGTH=1150;; (*ITAG) Solyc11g010490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3550044-3559191 transcript_region:SL2.40ch11:3550044..3559191+ functional_description:"Genomic DNA chromosome 5 P1 clone MNA5 (AHRD V1 **-- Q9FKP6_ARATH)"; NbS00042833g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|255579712|ref|XP_002530695.1| (e_value=7e-170) mitochondrial dicarboxylate carrier protein, putative [Ricinus communis];; (*SWP) sp|Q54PY7|M2OM_DICDI (e_value=6e-69) Probable mitochondrial 2-oxoglutarate/malate carrier protein OS=Dictyostelium discoideum GN=ucpC PE=3 SV=1;; (*TAIR) AT2G22500.1 (e_value=4e-152) | Symbols: UCP5, ATPUMP5, DIC1 | uncoupling protein 5 | chr2:9563531-9564472 REVERSE LENGTH=313;; (*ITAG) Solyc11g010500.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3562962-3563936 transcript_region:SL2.40ch11:3562962..3563936- go_terms:GO:0016020 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MMX1_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00007218g0009.1 protein AED:0.26 eAED:0.26 QI:57|0.66|0.5|1|0.33|0.5|4|217|278; (*GB) gi|225428693|ref|XP_002284957.1| (e_value=5e-86) PREDICTED: uncharacterized protein LOC100250293 [Vitis vinifera];; (*TAIR) AT1G49510.1 (e_value=5e-70) | Symbols: emb1273 | embryo defective 1273 | chr1:18327026-18328147 FORWARD LENGTH=240;; (*ITAG) Solyc01g108650.2.1 (e_value=4e-137) genomic_reference:SL2.40ch01 gene_region:87646065-87649124 transcript_region:SL2.40ch01:87646065..87649124- functional_description:"Unknown Protein (AHRD V1)"; NbS00007218g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|400; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=6e-50) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q3E7I6|GDL11_ARATH (e_value=8e-41) GDSL esterase/lipase At1g28650 OS=Arabidopsis thaliana GN=At1g28650 PE=2 SV=1;; (*TAIR) AT1G28650.1 (e_value=6e-42) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10069547-10071082 REVERSE LENGTH=385;; (*ITAG) Solyc01g108640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00007218g0006.1 protein AED:0.22 eAED:0.22 QI:463|0.83|1|1|0.5|0.71|7|302|304; (*GB) gi|255561655|ref|XP_002521837.1| (e_value=9e-172) Serine/threonine-protein kinase SAPK10, putative [Ricinus communis];; (*SWP) sp|Q940H6|SRK2E_ARATH (e_value=6e-164) Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1;; (*TAIR) AT4G33950.1 (e_value=4e-165) | Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 | Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362;; (*ITAG) Solyc01g108280.2.1 (e_value=3e-160) genomic_reference:SL2.40ch01 gene_region:87392164-87396307 transcript_region:SL2.40ch01:87392164..87396307- go_terms:GO:0004679 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q0PL87_CAMSI); contains Interpro domain(s) IPR015740 Plant protein serine/threonine kinase-like "; GO:0004679 NbS00012866g0006.1 protein AED:0.26 eAED:0.26 QI:0|0.78|0.73|0.93|0.35|0.6|15|30|561; (*GB) gi|359494010|ref|XP_002281589.2| (e_value=0.0) PREDICTED: protein KIAA0415-like [Vitis vinifera];; (*TAIR) AT3G15160.1 (e_value=0.0) | Symbols: | unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr3:5104582-5108279 FORWARD LENGTH=562;; (*ITAG) Solyc10g006410.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1020301-1029333 transcript_region:SL2.40ch10:1020301..1029333+ functional_description:"Genomic DNA chromosome 3 BAC clone F4B12 (AHRD V1 ***- Q9LIL9_ARATH)"; NbS00012866g0009.1 protein AED:0.15 eAED:0.20 QI:0|0.37|0.44|1|0.25|0.33|9|0|415; (*GB) gi|359494019|ref|XP_002278971.2| (e_value=3e-76) PREDICTED: homeobox-leucine zipper protein HDG2-like [Vitis vinifera];; (*SWP) sp|Q8RWU4|ATML1_ARATH (e_value=4e-72) Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1;; (*TAIR) AT4G21750.2 (e_value=3e-73) | Symbols: ATML1 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr4:11556965-11560243 FORWARD LENGTH=762;; (*ITAG) Solyc10g006420.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1030078-1033236 transcript_region:SL2.40ch10:1030078..1033236- go_terms:GO:0003700,GO:0043565 functional_description:"Homeobox leucine-zipper protein (AHRD V1 ***- Q8H964_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700,GO:0043565 NbS00020916g0008.1 protein AED:0.23 eAED:0.24 QI:445|0.81|0.83|1|0.72|0.91|12|135|634; (*GB) gi|357477093|ref|XP_003608832.1| (e_value=0.0) Nucleotide pyrophosphatase/phosphodiesterase [Medicago truncatula];; (*SWP) sp|Q5MAU8|PPA27_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1;; (*TAIR) AT5G50400.1 (e_value=0.0) | Symbols: ATPAP27, PAP27 | purple acid phosphatase 27 | chr5:20523575-20526231 REVERSE LENGTH=611;; (*ITAG) Solyc08g083250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62929315-62934754 transcript_region:SL2.40ch08:62929315..62934754+ go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00020916g0002.1 protein AED:0.25 eAED:0.25 QI:0|0.87|0.88|1|0.87|0.77|9|501|428; (*GB) gi|225456315|ref|XP_002283742.1| (e_value=0.0) PREDICTED: snurportin-1 [Vitis vinifera];; (*SWP) sp|Q5ZI43|SPN1_CHICK (e_value=7e-46) Snurportin-1 OS=Gallus gallus GN=SNUPN PE=2 SV=1;; (*TAIR) AT4G24880.1 (e_value=1e-178) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12808593-12811218 FORWARD LENGTH=417;; (*ITAG) Solyc08g083260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62935402-62939826 transcript_region:SL2.40ch08:62935402..62939826- functional_description:"Snurportin-like protein (AHRD V1 ***- D0NX00_PHYIN)"; NbS00010084g0013.1 protein AED:0.69 eAED:0.73 QI:0|0|0|0.6|0|0.4|5|0|138; (*GB) gi|311692163|dbj|BAJ25691.1| (e_value=2e-24) hypothetical protein [Oryza longistaminata];; (*TAIR) AT5G16950.1 (e_value=7e-15) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5572640-5572939 FORWARD LENGTH=99;; (*ITAG) Solyc07g052920.2.1 (e_value=1e-32) genomic_reference:SL2.40ch07 gene_region:58646169-58647773 transcript_region:SL2.40ch07:58646169..58647773+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010084g0011.1 protein AED:0.04 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|378; (*GB) gi|255549295|ref|XP_002515701.1| (e_value=2e-21) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc07g052930.2.1 (e_value=6e-117) genomic_reference:SL2.40ch07 gene_region:58648332-58650234 transcript_region:SL2.40ch07:58648332..58650234- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *-*- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00010084g0012.1 protein AED:0.10 eAED:0.12 QI:0|0.80|0.68|1|0.85|0.90|22|0|2378; (*GB) gi|359485692|ref|XP_002275342.2| (e_value=0.0) PREDICTED: probable histone-lysine N-methyltransferase ATXR3-like [Vitis vinifera];; (*SWP) sp|O23372|ATXR3_ARATH (e_value=0.0) Probable histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=1 SV=2;; (*TAIR) AT4G15180.1 (e_value=0.0) | Symbols: SDG2, ATXR3 | SET domain protein 2 | chr4:8651999-8662178 FORWARD LENGTH=2335;; (*ITAG) Solyc07g052940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58649958-58663425 transcript_region:SL2.40ch07:58649958..58663425- functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6JWJ3_SCHJY); contains Interpro domain(s) IPR001214 SET "; NbS00045642g0004.1 protein AED:0.01 eAED:0.01 QI:283|1|1|1|0.66|0.75|4|257|599; (*GB) gi|359479751|ref|XP_002267241.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SA69|Y1301_ARATH (e_value=0.0) BTB/POZ domain-containing protein At1g03010 OS=Arabidopsis thaliana GN=At1g03010 PE=2 SV=1;; (*TAIR) AT1G03010.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr1:693480-696188 FORWARD LENGTH=634;; (*ITAG) Solyc09g074630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61949651-61951803 transcript_region:SL2.40ch09:61949651..61951803+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KCA4_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00031394g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.83|1|0.6|0.66|6|0|597; (*GB) gi|359494165|ref|XP_002274204.2| (e_value=0.0) PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera];; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=7e-145) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT4G26640.2 (e_value=5e-146) | Symbols: WRKY20, AtWRKY20 | WRKY family transcription factor family protein | chr4:13437298-13440693 REVERSE LENGTH=557;; (*ITAG) Solyc12g014610.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5610112-5616122 transcript_region:SL2.40ch12:5610112..5616122+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 78 (AHRD V1 ***- Q5HZ67_ORYSA); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00008379g0004.1 protein AED:0.22 eAED:0.22 QI:438|0.68|0.73|0.95|0.81|0.78|23|356|970; (*GB) gi|297745095|emb|CBI38934.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TEQ8|PIGO_HUMAN (e_value=8e-67) GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=2 SV=3;; (*TAIR) AT5G17250.1 (e_value=0.0) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00021607g0004.1 protein AED:0.04 eAED:0.04 QI:81|1|0.5|1|0|0|2|143|73 NbS00021607g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|313; (*GB) gi|224142337|ref|XP_002324515.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMU0|FCL2_ARATH (e_value=0.0) Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1;; (*TAIR) AT1G17890.3 (e_value=0.0) | Symbols: GER2 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:6154478-6155440 REVERSE LENGTH=320;; (*ITAG) Solyc07g006070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:911735-912676 transcript_region:SL2.40ch07:911735..912676+ go_terms:GO:0042356 functional_description:"GDP-fucose synthetase NAD dependent epimerase/dehydratase (AHRD V1 **-* Q30XA1_DESDG); contains Interpro domain(s) IPR001509 NAD-dependent epimerase/dehydratase "; GO:0042356 NbS00012585g0006.1 protein AED:0.29 eAED:0.29 QI:643|1|1|1|0.5|0.4|5|287|89; (*GB) gi|147821809|emb|CAN61666.1| (e_value=1e-27) hypothetical protein VITISV_037832 [Vitis vinifera];; (*SWP) sp|F4J117|LSF1_ARATH (e_value=6e-21) Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1;; (*TAIR) AT3G01510.1 (e_value=4e-22) | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682 REVERSE LENGTH=591;; (*ITAG) Solyc12g062250.1.1 (e_value=1e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49501289-49506485 transcript_region:SL2.40ch12:49501289..49506485+ go_terms:GO:0005515 functional_description:"5&apos-AMP-activated protein kinase beta-1 subunit (AHRD V1 *--- C6LYW2_GIALA); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0005515 NbS00012585g0010.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.5|0.75|0.66|0.75|4|241|152; (*GB) gi|147821809|emb|CAN61666.1| (e_value=1e-60) hypothetical protein VITISV_037832 [Vitis vinifera];; (*SWP) sp|F4J117|LSF1_ARATH (e_value=1e-61) Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis thaliana GN=LSF1 PE=1 SV=1;; (*TAIR) AT3G01510.1 (e_value=8e-63) | Symbols: LSF1 | like SEX4 1 | chr3:198855-201682 REVERSE LENGTH=591;; (*ITAG) Solyc12g062260.1.1 (e_value=4e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49509005-49510385 transcript_region:SL2.40ch12:49509005..49510385+ functional_description:"5&apos-AMP-activated protein kinase beta-1 subunit (AHRD V1 *-*- C6LYW2_GIALA)"; NbS00059252g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|297790905|ref|XP_002863337.1| (e_value=4e-32) hypothetical protein ARALYDRAFT_494218 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q41916|CYT5_ARATH (e_value=3e-32) Cysteine proteinase inhibitor 5 OS=Arabidopsis thaliana GN=CYS5 PE=2 SV=2;; (*TAIR) AT5G47550.1 (e_value=3e-33) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc05g054120.1.1 (e_value=7e-39) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:63232891-63233280 transcript_region:SL2.40ch05:63232891..63233280+ go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 *-*- Q9ARH0_DIACA); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869 NbS00053457g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|1|1|2|0|459; (*GB) gi|225458189|ref|XP_002281098.1| (e_value=0.0) PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Vitis vinifera];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=2e-75) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT1G27620.1 (e_value=0.0) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:9608444-9610432 FORWARD LENGTH=442;; (*ITAG) Solyc04g080720.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62412447-62415204 transcript_region:SL2.40ch04:62412447..62415204- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7KBT0_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00021031g0006.1 protein AED:0.30 eAED:0.32 QI:0|0.71|0.37|1|0.71|0.75|8|0|469; (*GB) gi|255570132|ref|XP_002526028.1| (e_value=4e-119) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q9SXS2|SUT33_ARATH (e_value=4e-113) Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2;; (*TAIR) AT1G23090.1 (e_value=3e-114) | Symbols: AST91, SULTR3;3 | sulfate transporter 91 | chr1:8185238-8188954 REVERSE LENGTH=631;; (*ITAG) Solyc05g007980.2.1 (e_value=2e-125) genomic_reference:SL2.40ch05 gene_region:2404490-2408988 transcript_region:SL2.40ch05:2404490..2408988+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00029532g0011.1 protein AED:0.30 eAED:0.30 QI:71|0.71|1|1|1|1|8|528|374; (*GB) gi|224088635|ref|XP_002308506.1| (e_value=2e-135) predicted protein [Populus trichocarpa];; (*TAIR) AT3G43540.1 (e_value=7e-125) | Symbols: | Protein of unknown function (DUF1350) | chr3:15430770-15433035 FORWARD LENGTH=373;; (*ITAG) Solyc08g075100.2.1 (e_value=1e-165) genomic_reference:SL2.40ch08 gene_region:56422085-56427929 transcript_region:SL2.40ch08:56422085..56427929+ functional_description:"Alpha/beta superfamily hydrolase (AHRD V1 *-*- B9P114_PROMA); contains Interpro domain(s) IPR010765 Protein of unknown function DUF1350 "; NbS00029532g0004.1 protein AED:0.29 eAED:0.29 QI:0|0.57|0.5|0.87|1|1|8|0|617; (*GB) gi|359474736|ref|XP_002273482.2| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=2e-104) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT1G31650.1 (e_value=0.0) | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide exchange factor 14 | chr1:11326474-11329767 REVERSE LENGTH=576;; (*ITAG) Solyc08g075120.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56435856-56442881 transcript_region:SL2.40ch08:56435856..56442881- go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein (AHRD V1 ***- B6UC56_MAIZE); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00028051g0101.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|99 NbS00058671g0006.1 protein AED:0.02 eAED:0.02 QI:157|1|0.5|1|1|1|2|0|134; (*ITAG) Solyc07g021740.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00030342g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|233; (*GB) gi|255571014|ref|XP_002526458.1| (e_value=8e-61) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G02430.1 (e_value=3e-57) | Symbols: | Protein of unknown function (DUF679) | chr3:499360-500019 FORWARD LENGTH=219;; (*ITAG) Solyc01g103580.2.1 (e_value=7e-91) genomic_reference:SL2.40ch01 gene_region:83913684-83914709 transcript_region:SL2.40ch01:83913684..83914709+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00041656g0003.1 protein AED:0.08 eAED:0.08 QI:364|0.83|0.85|1|0.83|0.71|7|169|399; (*GB) gi|147835801|emb|CAN61992.1| (e_value=3e-95) hypothetical protein VITISV_030445 [Vitis vinifera];; (*SWP) sp|Q9SFZ3|BH110_ARATH (e_value=6e-50) Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2;; (*TAIR) AT1G27660.1 (e_value=5e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9621701-9625666 FORWARD LENGTH=453;; (*ITAG) Solyc04g080710.2.1 (e_value=6e-125) genomic_reference:SL2.40ch04 gene_region:62391119-62395685 transcript_region:SL2.40ch04:62391119..62395685- go_terms:GO:0005634 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-*- Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634 NbS00013881g0001.1 protein AED:0.13 eAED:0.13 QI:4434|0.5|0.66|1|0|0.33|3|0|311; (*GB) gi|297745156|emb|CBI39148.3| (e_value=2e-17) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=9e-15) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=7e-16) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc11g012540.1.1 (e_value=4e-68) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5353456-5355147 transcript_region:SL2.40ch11:5353456..5355147+ functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00013881g0019.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.33|0.25|4|1002|565; (*GB) gi|113205142|gb|AAT40504.2| (e_value=2e-36) Polyprotein, putative [Solanum demissum];; (*ITAG) Solyc12g099920.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:65216365-65220969 transcript_region:SL2.40ch12:65216365..65220969+ go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1)"; GO:0006355 NbS00013881g0018.1 protein AED:0.26 eAED:0.25 QI:3|0.82|0.83|0.96|0.93|0.86|30|997|1637; (*GB) gi|296083825|emb|CBI24213.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O14647|CHD2_HUMAN (e_value=0.0) Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2;; (*TAIR) AT2G13370.1 (e_value=0.0) | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544601-5555543 REVERSE LENGTH=1724;; (*ITAG) Solyc12g099910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65193688-65213847 transcript_region:SL2.40ch12:65193688..65213847+ go_terms:GO:0005634,GO:0005524 functional_description:"Chromodomain helicase DNA binding protein 2 (Predicted) (AHRD V1 ***- D4AD08_RAT); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005634,GO:0005524 NbS00023402g0002.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|0.66|1|1|3|0|501; (*GB) gi|359489466|ref|XP_002266823.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g17580-like [Vitis vinifera];; (*SWP) sp|Q9LF66|Y5758_ARATH (e_value=1e-121) BTB/POZ domain-containing protein At5g17580 OS=Arabidopsis thaliana GN=At5g17580 PE=2 SV=1;; (*TAIR) AT5G17580.1 (e_value=1e-122) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:5795302-5797031 FORWARD LENGTH=548;; (*ITAG) Solyc01g081140.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:72970392-72972339 transcript_region:SL2.40ch01:72970392..72972339+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L161_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00023402g0005.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|296088988|emb|CBI38691.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g073480.2.1 (e_value=9e-28) genomic_reference:SL2.40ch06 gene_region:41679362-41681452 transcript_region:SL2.40ch06:41679362..41681452+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7L161_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00023402g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.8|0.8|0.25|0.6|5|791|167; (*GB) gi|225434044|ref|XP_002274208.1| (e_value=1e-45) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Vitis vinifera];; (*SWP) sp|Q54YW8|RPAB3_DICDI (e_value=4e-30) DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1;; (*TAIR) AT3G59600.1 (e_value=2e-42) | Symbols: NRPB8B, NRPD8B, NRPE8B | RNA polymerase Rpb8 | chr3:22016629-22017923 FORWARD LENGTH=146;; (*ITAG) Solyc01g081150.2.1 (e_value=1e-79) genomic_reference:SL2.40ch01 gene_region:72972619-72975564 transcript_region:SL2.40ch01:72972619..72975564- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 **** C3KGW8_ANOFI); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8 "; GO:0005515,GO:0003899 NbS00004139g0005.1 protein AED:0.09 eAED:0.09 QI:204|1|1|1|0.37|0.55|9|259|339; (*GB) gi|255578135|ref|XP_002529937.1| (e_value=0.0) UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=5e-154) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT2G28315.1 (e_value=0.0) | Symbols: | Nucleotide/sugar transporter family protein | chr2:12088896-12090570 FORWARD LENGTH=342;; (*ITAG) Solyc11g069540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51242625-51246521 transcript_region:SL2.40ch11:51242625..51246521- functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; NbS00051781g0009.1 protein AED:0.30 eAED:0.30 QI:0|0.75|0.55|1|0.75|1|9|0|329; (*GB) gi|225434233|ref|XP_002280271.1| (e_value=2e-176) PREDICTED: probable uridine nucleosidase 2 [Vitis vinifera];; (*SWP) sp|Q8LAC4|URH2_ARATH (e_value=2e-151) Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2 PE=2 SV=1;; (*TAIR) AT1G05620.2 (e_value=2e-153) | Symbols: URH2 | uridine-ribohydrolase 2 | chr1:1679609-1681527 FORWARD LENGTH=302;; (*ITAG) Solyc12g018990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:8921450-8934930 transcript_region:SL2.40ch12:8921450..8934930+ functional_description:"Ribonucleoside hydrolase 1 (AHRD V1 ***- D1RWC6_SEROD); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; NbS00051781g0006.1 protein AED:0.17 eAED:0.17 QI:274|1|1|1|1|1|10|403|468; (*GB) gi|225434229|ref|XP_002275950.1| (e_value=1e-111) PREDICTED: uncharacterized protein LOC100259405 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8BN59|LARP6_MOUSE (e_value=2e-14) La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1;; (*TAIR) AT2G43970.1 (e_value=6e-87) | Symbols: | RNA-binding protein | chr2:18205535-18208031 REVERSE LENGTH=545;; (*ITAG) Solyc12g019000.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:8936330-8948218 transcript_region:SL2.40ch12:8936330..8948218- go_terms:GO:0003676,GO:0030529,GO:0000166 functional_description:"La-related protein 6 (AHRD V1 *--- LARP6_MOUSE); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0003676,GO:0030529,GO:0000166 NbS00027114g0019.1 protein AED:0.14 eAED:0.14 QI:0|1|0.75|1|0.85|0.75|8|0|514; (*GB) gi|255536819|ref|XP_002509476.1| (e_value=0.0) somatic embryogenesis receptor kinase, putative [Ricinus communis];; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=1e-171) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=8e-173) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc11g044460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35703663-35706570 transcript_region:SL2.40ch11:35703663..35706570+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027114g0003.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|230; (*GB) gi|224080313|ref|XP_002306093.1| (e_value=5e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49330.1 (e_value=6e-61) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr1:18250043-18251038 FORWARD LENGTH=331;; (*ITAG) Solyc08g081600.1.1 (e_value=7e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61766628-61767263 transcript_region:SL2.40ch08:61766628..61767263+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027114g0021.1 protein AED:0.13 eAED:0.13 QI:0|0.25|0.2|0.8|0.75|1|5|875|315 NbS00027114g0020.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.33|0.66|0|0.33|3|0|161; (*GB) gi|469072|dbj|BAA03743.1| (e_value=9e-56) RNA-binding gricine-rich protein-1c [Nicotiana sylvestris];; (*SWP) sp|Q03878|GRP1_DAUCA (e_value=2e-46) Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G21660.2 (e_value=6e-45) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159;; (*ITAG) Solyc01g109660.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:88321513-88322795 transcript_region:SL2.40ch01:88321513..88322795+ go_terms:GO:0008266 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00027114g0022.1 protein AED:0.42 eAED:0.79 QI:0|0|0|0.25|0.66|0.5|4|0|231 NbS00027114g0018.1 protein AED:0.23 eAED:0.36 QI:0|0|0|1|0|0|3|0|139 NbS00052052g0003.1 protein AED:0.43 eAED:0.54 QI:207|0.5|0.66|1|0.5|0.33|3|189|32 NbS00052516g0004.1 protein AED:0.16 eAED:0.16 QI:68|0.88|0.89|1|0.88|0.94|19|111|678; (*GB) gi|297746269|emb|CBI16325.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28320.1 (e_value=0.0) | Symbols: | Pleckstrin homology (PH) and lipid-binding START domains-containing protein | chr2:12095161-12099424 FORWARD LENGTH=737;; (*ITAG) Solyc04g025280.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:19130532-19143428 transcript_region:SL2.40ch04:19130532..19143428+ go_terms:GO:0035091 functional_description:"START domain-containing protein (AHRD V1 **-- Q5K2N0_POAPR); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0035091 NbS00047039g0007.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|0.5|2|0|130; (*GB) gi|225442569|ref|XP_002279092.1| (e_value=1e-52) PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=2e-46) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=2e-47) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc12g044310.1.1 (e_value=6e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44643352-44647348 transcript_region:SL2.40ch12:44643352..44647348- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00016521g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|319; (*GB) gi|225443978|ref|XP_002280610.1| (e_value=1e-105) PREDICTED: uncharacterized protein LOC100251421 [Vitis vinifera];; (*TAIR) AT4G03620.1 (e_value=5e-79) | Symbols: | myosin heavy chain-related | chr4:1607040-1608665 REVERSE LENGTH=342;; (*ITAG) Solyc08g023270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:15380421-15381729 transcript_region:SL2.40ch08:15380421..15381729+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016521g0006.1 protein AED:0.08 eAED:0.08 QI:76|1|1|1|0.84|0.85|14|167|991; (*GB) gi|356557797|ref|XP_003547197.1| (e_value=0.0) PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Glycine max];; (*SWP) sp|Q8RXD4|BRCA1_ARATH (e_value=1e-118) Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1;; (*TAIR) AT4G21070.1 (e_value=9e-120) | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibility1 | chr4:11248174-11252633 FORWARD LENGTH=941;; (*ITAG) Solyc08g023280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:15381957-15388366 transcript_region:SL2.40ch08:15381957..15388366- go_terms:GO:0004842 functional_description:"Tripartite motif-containing 22 (Predicted) (AHRD V1 *--- B0VXD4_CALJA); contains Interpro domain(s) IPR001357 BRCT "; GO:0004842 NbS00054425g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|482; (*GB) gi|225441317|ref|XP_002275980.1| (e_value=0.0) PREDICTED: regulatory protein NPR5 [Vitis vinifera];; (*SWP) sp|Q9ZVC2|NPR5_ARATH (e_value=0.0) Regulatory protein NPR5 OS=Arabidopsis thaliana GN=NPR5 PE=1 SV=1;; (*TAIR) AT2G41370.1 (e_value=0.0) | Symbols: BOP2 | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491;; (*ITAG) Solyc10g079460.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60334589-60336730 transcript_region:SL2.40ch10:60334589..60336730+ go_terms:GO:0005515 functional_description:"NPR1-like protein (Fragment) (AHRD V1 ***- Q2QBV6_PYRCO); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00017356g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|0.71|1|1|0.85|7|0|418; (*GB) gi|224058707|ref|XP_002299613.1| (e_value=0.0) anion exchanger family protein [Populus trichocarpa];; (*SWP) sp|Q9XI23|BOR4_ARATH (e_value=0.0) Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1;; (*TAIR) AT1G15460.1 (e_value=0.0) | Symbols: ATBOR4, BOR4 | HCO3- transporter family | chr1:5310196-5313376 REVERSE LENGTH=683;; (*ITAG) Solyc03g120020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62586853-62591867 transcript_region:SL2.40ch03:62586853..62591867+ go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0005452 NbS00052046g0003.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|1|1|3|0|312; (*GB) gi|359492645|ref|XP_002281995.2| (e_value=2e-98) PREDICTED: cytochrome P450 82A3 [Vitis vinifera];; (*SWP) sp|O49859|C82A4_SOYBN (e_value=2e-88) Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1;; (*TAIR) AT4G31950.1 (e_value=4e-86) | Symbols: CYP82C3 | cytochrome P450, family 82, subfamily C, polypeptide 3 | chr4:15455163-15457090 FORWARD LENGTH=512;; (*ITAG) Solyc04g079680.2.1 (e_value=9e-142) genomic_reference:SL2.40ch04 gene_region:61643971-61645817 transcript_region:SL2.40ch04:61643971..61645817+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010587g0006.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|22331906|ref|NP_191825.2| (e_value=0.0) putative galacturonosyltransferase-like 7 [Arabidopsis thaliana];; (*SWP) sp|Q8VYF4|GATL7_ARATH (e_value=0.0) Probable galacturonosyltransferase-like 7 OS=Arabidopsis thaliana GN=GATL7 PE=2 SV=1;; (*TAIR) AT3G62660.1 (e_value=0.0) | Symbols: GATL7 | galacturonosyltransferase-like 7 | chr3:23173419-23174504 FORWARD LENGTH=361;; (*ITAG) Solyc09g075560.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62750328-62751431 transcript_region:SL2.40ch09:62750328..62751431- go_terms:GO:0016758 functional_description:"Glycosyltransferase family GT8 protein (AHRD V1 ***- D0ECQ6_POPDE); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00010587g0018.1 protein AED:0.31 eAED:0.31 QI:0|0.33|0|1|1|0.75|4|0|205 NbS00039857g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|255541222|ref|XP_002511675.1| (e_value=5e-53) Auxin-induced protein X10A, putative [Ricinus communis];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=2e-19) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G60690.1 (e_value=3e-43) | Symbols: | SAUR-like auxin-responsive protein family | chr3:22435262-22435774 FORWARD LENGTH=170;; (*ITAG) Solyc01g091030.2.1 (e_value=1e-91) genomic_reference:SL2.40ch01 gene_region:76507949-76509039 transcript_region:SL2.40ch01:76507949..76509039+ functional_description:"Auxin-responsive family protein (AHRD V1 ***- D7LRT5_ARALY); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00002123g0002.1 protein AED:0.32 eAED:0.34 QI:0|0|0|1|1|1|2|0|100; (*GB) gi|225431118|ref|XP_002265925.1| (e_value=5e-17) PREDICTED: thaumatin-like protein 1a [Vitis vinifera];; (*TAIR) AT1G75800.1 (e_value=3e-17) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:28458889-28460447 FORWARD LENGTH=330;; (*ITAG) Solyc02g083790.2.1 (e_value=2e-20) genomic_reference:SL2.40ch02 gene_region:41639171-41641216 transcript_region:SL2.40ch02:41639171..41641216- go_terms:GO:0005515 functional_description:"Thaumatin-like protein (AHRD V1 ***- Q9ZQY9_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00008021g0001.1 protein AED:0.13 eAED:0.13 QI:220|0.8|0.83|1|0.6|0.5|6|511|368; (*GB) gi|147780244|emb|CAN65737.1| (e_value=4e-71) hypothetical protein VITISV_037753 [Vitis vinifera];; (*SWP) sp|O65399|E131_ARATH (e_value=5e-24) Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3;; (*TAIR) AT1G09460.1 (e_value=1e-33) | Symbols: | Carbohydrate-binding X8 domain superfamily protein | chr1:3053901-3055090 FORWARD LENGTH=330;; (*ITAG) Solyc01g101120.2.1 (e_value=2e-96) genomic_reference:SL2.40ch01 gene_region:82731870-82734442 transcript_region:SL2.40ch01:82731870..82734442+ functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B4FGE4_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00009021g0011.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0.5|0.33|3|0|199; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=2e-100) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-28) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G03620.1 (e_value=5e-61) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=1e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00009021g0012.1 protein AED:0.32 eAED:0.35 QI:0|0|0|0.66|0|0.66|3|0|228; (*GB) gi|224116290|ref|XP_002317261.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=1e-13) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=1e-14) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc05g010500.1.1 (e_value=9e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:4714402-4715220 transcript_region:SL2.40ch05:4714402..4715220- functional_description:"F-box family protein (AHRD V1 ***- B9IAP0_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00009021g0001.1 protein AED:0.00 eAED:0.00 QI:129|-1|0|1|-1|1|1|0|126 NbS00009021g0010.1 protein AED:0.11 eAED:0.12 QI:7|0|0|1|0.5|0|3|0|306; (*GB) gi|224063167|ref|XP_002301023.1| (e_value=2e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZM3|PPCS2_ARATH (e_value=2e-101) Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2;; (*TAIR) AT1G12350.1 (e_value=1e-100) | Symbols: ATCOAB, COAB | 4-phospho-panto-thenoylcysteine synthetase | chr1:4198870-4200633 FORWARD LENGTH=317;; (*ITAG) Solyc12g056840.1.1 (e_value=2e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48269504-48272374 transcript_region:SL2.40ch12:48269504..48272374+ functional_description:"Phosphopantothenate--cysteine ligase (AHRD V1 **-- B6TMK9_MAIZE); contains Interpro domain(s) IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal "; NbS00056680g0002.1 protein AED:0.15 eAED:0.15 QI:344|1|1|1|0.6|0.33|6|1635|176; (*GB) gi|224092103|ref|XP_002309474.1| (e_value=7e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYG9|MSL10_ARATH (e_value=2e-28) Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1;; (*TAIR) AT5G12080.3 (e_value=1e-29) | Symbols: MSL10, ATMSL10 | mechanosensitive channel of small conductance-like 10 | chr5:3898182-3900923 REVERSE LENGTH=734;; (*ITAG) Solyc10g055710.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52715600-52720047 transcript_region:SL2.40ch10:52715600..52720047- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B8LXW9_TALSN); contains Interpro domain(s) IPR016688 Membrane protein, At2g17000, predicted "; GO:0016020 NbS00037550g0001.1 protein AED:0.01 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|100; (*ITAG) Solyc01g080500.2.1 (e_value=7e-14) genomic_reference:SL2.40ch01 gene_region:72241800-72243135 transcript_region:SL2.40ch01:72241800..72243135- functional_description:"Unknown Protein (AHRD V1)"; NbS00037550g0004.1 protein AED:0.05 eAED:0.08 QI:0|1|0.71|1|1|1|7|0|508; (*GB) gi|255557353|ref|XP_002519707.1| (e_value=0.0) 50 kDa ketoavyl-ACP synthase [Ricinus communis];; (*SWP) sp|P52410|KASC1_ARATH (e_value=0.0) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.1 (e_value=0.0) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=473;; (*ITAG) Solyc02g070790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34974215-34978260 transcript_region:SL2.40ch02:34974215..34978260- go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase 2 (AHRD V1 **** D0ZZB8_CHLPP); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00019091g0003.1 protein AED:0.24 eAED:0.35 QI:0|0.14|0|0.87|1|0.87|8|0|839; (*GB) gi|225432728|ref|XP_002282919.1| (e_value=0.0) PREDICTED: probable RNA helicase SDE3 [Vitis vinifera];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=0.0) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=0.0) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00018181g0003.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|197; (*GB) gi|113205399|gb|AAU90302.2| (e_value=4e-12) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00018181g0004.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|175; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g056490.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47405128-47410909 transcript_region:SL2.40ch01:47405128..47410909+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00018181g0001.1 protein AED:0.05 eAED:0.05 QI:421|1|0.5|1|0|0.5|2|0|773; (*GB) gi|297820588|ref|XP_002878177.1| (e_value=0.0) C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G57880.1 (e_value=0.0) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein | chr3:21431198-21433519 REVERSE LENGTH=773;; (*ITAG) Solyc10g078680.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59742672-59744990 transcript_region:SL2.40ch10:59742672..59744990- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00018181g0009.1 protein AED:0.28 eAED:0.28 QI:122|1|1|1|0.5|0.33|3|358|159; (*GB) gi|255583146|ref|XP_002532339.1| (e_value=8e-78) protein translocase, putative [Ricinus communis];; (*SWP) sp|O48528|OP163_ARATH (e_value=3e-70) Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1;; (*TAIR) AT2G42210.2 (e_value=2e-71) | Symbols: ATOEP16-3, OEP16-3 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr2:17590600-17591591 FORWARD LENGTH=173;; (*ITAG) Solyc10g078690.1.1 (e_value=9e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59747948-59751439 transcript_region:SL2.40ch10:59747948..59751439- go_terms:GO:0005743 functional_description:"Mitochondrial protein translocase family (Fragment) (AHRD V1 ***- C1N7T2_MICPS); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0005743 NbS00028798g0003.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|179; (*GB) gi|224117042|ref|XP_002331815.1| (e_value=6e-83) predicted protein [Populus trichocarpa];; (*TAIR) AT2G42610.2 (e_value=9e-82) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc10g007310.1.1 (e_value=3e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1717852-1718493 transcript_region:SL2.40ch10:1717852..1718493+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 *-*- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00028798g0006.1 protein AED:0.06 eAED:0.10 QI:56|0.6|0.33|1|1|0.83|6|0|359; (*GB) gi|357452165|ref|XP_003596359.1| (e_value=0.0) Uroporphyrinogen decarboxylase [Medicago truncatula];; (*SWP) sp|Q93ZB6|DCUP1_ARATH (e_value=0.0) Uroporphyrinogen decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=At3g14930 PE=2 SV=2;; (*TAIR) AT3G14930.2 (e_value=0.0) | Symbols: HEME1 | Uroporphyrinogen decarboxylase | chr3:5020675-5022577 FORWARD LENGTH=418;; (*ITAG) Solyc10g007320.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1723048-1727585 transcript_region:SL2.40ch10:1723048..1727585- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** D7L387_ARALY); contains Interpro domain(s) IPR006361 Uroporphyrinogen decarboxylase HemE "; GO:0004853,GO:0042803 NbS00003599g0005.1 protein AED:0.01 eAED:0.01 QI:523|1|0.5|1|0|0|2|0|119; (*GB) gi|225458667|ref|XP_002282899.1| (e_value=1e-29) PREDICTED: NAC domain-containing protein 68 [Vitis vinifera];; (*ITAG) Solyc04g078670.2.1 (e_value=3e-49) genomic_reference:SL2.40ch04 gene_region:60958460-60960829 transcript_region:SL2.40ch04:60958460..60960829+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM35_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00003599g0105.1 protein AED:0.14 eAED:0.15 QI:3|0|0|1|0|0|2|0|82 NbS00003599g0201.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|487 NbS00003599g0211.1 protein AED:0.21 eAED:0.24 QI:0|0.81|0.66|1|0.90|0.83|12|0|723 NbS00021282g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|152; (*GB) gi|224083884|ref|XP_002307158.1| (e_value=3e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5BU09|EAPP_MOUSE (e_value=1e-32) E2F-associated phosphoprotein OS=Mus musculus GN=Eapp PE=1 SV=2;; (*TAIR) AT5G08320.1 (e_value=9e-60) | Symbols: | CONTAINS InterPro DOMAIN/s: E2F-associated phosphoprotein, C-terminal (InterPro:IPR019370); Has 149 Blast hits to 149 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr5:2677153-2678603 FORWARD LENGTH=150;; (*ITAG) Solyc01g008260.2.1 (e_value=1e-79) genomic_reference:SL2.40ch01 gene_region:2380615-2384353 transcript_region:SL2.40ch01:2380615..2384353+ functional_description:"E2F-associated phosphoprotein (AHRD V1 ***- Q0P5M4_BOVIN); contains Interpro domain(s) IPR019370 E2F-associated phosphoprotein, C-terminal "; NbS00021390g0013.1 protein AED:0.07 eAED:0.07 QI:90|1|1|1|0.75|0.55|9|285|468; (*GB) gi|76803519|gb|ABA55732.1| (e_value=0.0) ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT4G19230.1 (e_value=0.0) | Symbols: CYP707A1 | cytochrome P450, family 707, subfamily A, polypeptide 1 | chr4:10521524-10523517 FORWARD LENGTH=467;; (*ITAG) Solyc08g075320.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56595351-56597724 transcript_region:SL2.40ch08:56595351..56597724- go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00021390g0016.1 protein AED:0.35 eAED:0.43 QI:0|0.90|0.75|1|0.54|0.83|12|0|973; (*GB) gi|224129594|ref|XP_002328755.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7A9|AP4E_ARATH (e_value=0.0) AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1;; (*TAIR) AT1G31730.1 (e_value=0.0) | Symbols: | Adaptin family protein | chr1:11359907-11363916 FORWARD LENGTH=938;; (*ITAG) Solyc08g075310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56569786-56585758 transcript_region:SL2.40ch08:56569786..56585758+ go_terms:GO:0030117,GO:0005488 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 *-*- B2VRJ9_PYRTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030117,GO:0005488 NbS00001223g0005.1 protein AED:0.17 eAED:0.17 QI:0|1|0.5|1|0|0|2|428|99; (*GB) gi|225735180|gb|ACO25567.1| (e_value=6e-56) protein kinase-coding resistance protein [Nicotiana repanda];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=8e-33) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=6e-34) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=7e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00001223g0019.1 protein AED:0.17 eAED:0.17 QI:76|1|1|1|1|1|5|167|400; (*GB) gi|225456934|ref|XP_002281408.1| (e_value=7e-166) PREDICTED: tryptophan aminotransferase-related protein 2 [Vitis vinifera];; (*SWP) sp|Q9S7N2|TAA1_ARATH (e_value=6e-156) Tryptophan aminotransferase 1 OS=Arabidopsis thaliana GN=TAA1 PE=1 SV=1;; (*TAIR) AT1G70560.1 (e_value=5e-157) | Symbols: WEI8, TAA1, SAV3 | tryptophan aminotransferase of Arabidopsis 1 | chr1:26604894-26607319 FORWARD LENGTH=391;; (*ITAG) Solyc05g031600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:42392657-42394964 transcript_region:SL2.40ch05:42392657..42394964+ go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- Q94EJ8_ALLFI); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00001223g0022.1 protein AED:0.20 eAED:0.20 QI:0|0.85|0.75|1|0.57|0.62|8|0|452; (*GB) gi|225468648|ref|XP_002268069.1| (e_value=0.0) PREDICTED: lipase [Vitis vinifera];; (*SWP) sp|P04635|LIP_STAHY (e_value=5e-24) Lipase OS=Staphylococcus hyicus GN=lip PE=1 SV=1;; (*TAIR) AT1G10740.4 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3568343-3570466 REVERSE LENGTH=473;; (*ITAG) Solyc05g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1406-5315 transcript_region:SL2.40ch05:1406..5315- go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** B6UAB9_MAIZE)"; GO:0004806 NbS00001223g0020.1 protein AED:0.09 eAED:0.09 QI:283|1|1|1|1|1|11|401|426; (*GB) gi|225470599|ref|XP_002274463.1| (e_value=0.0) PREDICTED: AP-1 complex subunit mu-1 [Vitis vinifera];; (*SWP) sp|Q9BXS5|AP1M1_HUMAN (e_value=0.0) AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3;; (*TAIR) AT1G60780.1 (e_value=0.0) | Symbols: HAP13 | Clathrin adaptor complexes medium subunit family protein | chr1:22369289-22371885 REVERSE LENGTH=428;; (*ITAG) Solyc05g013340.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6428106-6437810 transcript_region:SL2.40ch05:6428106..6437810- go_terms:GO:0030276 functional_description:"AP-1 complex subunit mu-1 (AHRD V1 ***- B5X228_SALSA); contains Interpro domain(s) IPR001392 Clathrin adaptor, mu subunit "; GO:0030276 NbS00001223g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.75|1|0.33|0.5|4|652|1807; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=0.0) Prf [Solanum lycopersicum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=5e-163) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G59780.1 (e_value=1e-57) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:21993581-21997691 REVERSE LENGTH=906;; (*ITAG) Solyc05g013280.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6379863-6386810 transcript_region:SL2.40ch05:6379863..6386810+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001223g0015.1 protein AED:0.08 eAED:0.18 QI:0|0|0.33|0.66|1|1|3|0|124; (*GB) gi|350539055|ref|NP_001234116.1| (e_value=2e-42) similar to 60S ribosomal protein L35 [Solanum lycopersicum];; (*SWP) sp|Q9M5L0|RL35_EUPES (e_value=6e-41) 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1;; (*TAIR) AT2G39390.1 (e_value=2e-40) | Symbols: | Ribosomal L29 family protein | chr2:16450803-16451762 REVERSE LENGTH=123;; (*ITAG) Solyc06g075620.2.1 (e_value=4e-45) genomic_reference:SL2.40ch06 gene_region:43394530-43397000 transcript_region:SL2.40ch06:43394530..43397000- go_terms:GO:0003735 functional_description:"60S ribosomal protein L35 (AHRD V1 ***- D7M7V2_ARALY); contains Interpro domain(s) IPR001854 Ribosomal protein L29 "; GO:0003735 NbS00001223g0016.1 protein AED:0.69 eAED:0.69 QI:0|0.33|0|0.5|1|1|4|0|69 NbS00023957g0008.1 protein AED:0.30 eAED:0.30 QI:319|0.82|0.77|1|0.76|0.77|18|424|477; (*GB) gi|159459932|gb|ABW96363.1| (e_value=0.0) glutathione reductase [Ipomoea batatas];; (*SWP) sp|Q43621|GSHRC_PEA (e_value=0.0) Glutathione reductase, cytosolic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G24170.3 (e_value=0.0) | Symbols: ATGR1, GR1 | glutathione-disulfide reductase | chr3:8729762-8734115 REVERSE LENGTH=499;; (*ITAG) Solyc09g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66389831-66399718 transcript_region:SL2.40ch09:66389831..66399718- go_terms:GO:0004362 functional_description:"Glutathione-disulfide reductase (AHRD V1 **** Q1D9Y5_MYXXD); contains Interpro domain(s) IPR006324 Glutathione reductase, plant "; GO:0004362 NbS00023957g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.71|1|1|1|7|0|442; (*GB) gi|225433438|ref|XP_002285669.1| (e_value=4e-94) PREDICTED: uncharacterized protein LOC100259626 [Vitis vinifera];; (*TAIR) AT4G13670.1 (e_value=4e-89) | Symbols: PTAC5 | plastid transcriptionally active 5 | chr4:7948644-7950779 FORWARD LENGTH=387;; (*ITAG) Solyc09g091830.2.1 (e_value=4e-165) genomic_reference:SL2.40ch09 gene_region:66386226-66389639 transcript_region:SL2.40ch09:66386226..66389639+ go_terms:GO:0008152,GO:0006457 functional_description:"Peptidoglycan binding domain containing protein (AHRD V1 *-*- B6SSP4_MAIZE); contains Interpro domain(s) IPR002477 Peptidoglycan binding-like "; GO:0008152,GO:0006457 NbS00025959g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|1|1|2|0|1009; (*GB) gi|359477281|ref|XP_003631958.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Vitis vinifera];; (*SWP) sp|Q9M907|PP217_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1;; (*TAIR) AT3G06920.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:2181717-2184449 FORWARD LENGTH=871;; (*ITAG) Solyc01g080720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72469460-72474630 transcript_region:SL2.40ch01:72469460..72474630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025959g0102.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|112 NbS00025959g0105.1 protein AED:0.11 eAED:0.14 QI:0|0.8|0.45|1|1|1|11|0|1536 NbS00025959g0112.1 protein AED:0.16 eAED:0.16 QI:160|0.75|0.84|0.92|0.75|0.69|13|191|837 NbS00026416g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.66|1|1|3|0|418; (*GB) gi|85068590|gb|ABC69375.1| (e_value=3e-140) CYP82M1v4 [Nicotiana tabacum];; (*SWP) sp|Q9LSF8|C82G1_ARATH (e_value=1e-80) Cytochrome P450 82G1 OS=Arabidopsis thaliana GN=CYP82G1 PE=1 SV=1;; (*TAIR) AT3G25180.1 (e_value=8e-82) | Symbols: CYP82G1 | cytochrome P450, family 82, subfamily G, polypeptide 1 | chr3:9167443-9169270 REVERSE LENGTH=515;; (*ITAG) Solyc10g039210.2.1 (e_value=4e-119) genomic_reference:SL2.40ch10 gene_region:20742639-20746994 transcript_region:SL2.40ch10:20742639..20746994- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026416g0002.1 protein AED:0.10 eAED:0.13 QI:0|0|0.5|1|1|1|2|0|317; (*GB) gi|85068586|gb|ABC69373.1| (e_value=0.0) CYP82M1v2 [Nicotiana tabacum];; (*SWP) sp|O49394|C82C2_ARATH (e_value=4e-66) Cytochrome P450 82C2 OS=Arabidopsis thaliana GN=CYP82C2 PE=2 SV=2;; (*TAIR) AT4G31970.1 (e_value=3e-67) | Symbols: CYP82C2 | cytochrome P450, family 82, subfamily C, polypeptide 2 | chr4:15462408-15464358 FORWARD LENGTH=523;; (*ITAG) Solyc10g039210.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:20742639-20746994 transcript_region:SL2.40ch10:20742639..20746994- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017915g0109.1 protein AED:0.16 eAED:0.16 QI:141|1|1|1|0.88|0.8|10|360|506 NbS00017915g0103.1 protein AED:0.24 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|238 NbS00026295g0001.1 protein AED:0.15 eAED:0.17 QI:0|0.57|0.25|1|1|1|8|287|333; (*GB) gi|356495723|ref|XP_003516723.1| (e_value=2e-45) PREDICTED: GDSL esterase/lipase At5g08460-like [Glycine max];; (*SWP) sp|Q9SF78|GDL29_ARATH (e_value=6e-14) GDSL esterase/lipase At1g71691 OS=Arabidopsis thaliana GN=At1g71691 PE=2 SV=1;; (*TAIR) AT4G10950.1 (e_value=6e-40) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc00g209460.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19085842-19086263 transcript_region:SL2.40ch00:19085842..19086263- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00026295g0010.1 protein AED:0.14 eAED:0.15 QI:0|0|0|1|0.25|0.4|5|0|523; (*GB) gi|147795390|emb|CAN67605.1| (e_value=3e-36) hypothetical protein VITISV_030993 [Vitis vinifera];; (*SWP) sp|Q9SHX9|FB72_ARATH (e_value=6e-16) Putative F-box protein At1g65770 OS=Arabidopsis thaliana GN=At1g65770 PE=4 SV=1;; (*TAIR) AT1G65770.1 (e_value=4e-17) | Symbols: AMR1 | ascorbic acid mannose pathway regulator 1 | chr1:24460656-24461738 REVERSE LENGTH=360;; (*ITAG) Solyc08g082510.1.1 (e_value=2e-142) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:62444057-62445175 transcript_region:SL2.40ch08:62444057..62445175+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00035921g0005.1 protein AED:0.24 eAED:0.26 QI:0|0.52|0.44|0.66|0.70|0.72|18|0|610; (*GB) gi|224101187|ref|XP_002312177.1| (e_value=7e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7T7|SCC11_ARATH (e_value=3e-95) Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana GN=SYN1 PE=2 SV=2;; (*TAIR) AT5G05490.2 (e_value=1e-96) | Symbols: SYN1, DIF1 | Rad21/Rec8-like family protein | chr5:1624712-1629144 FORWARD LENGTH=617;; (*ITAG) Solyc06g074870.1.1 (e_value=9e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42782331-42784881 transcript_region:SL2.40ch06:42782331..42784881+ functional_description:"Sister chromatid cohesion 1 protein 1 (AHRD V1 ***- SCC11_ARATH)"; NbS00000177g0009.1 protein AED:0.04 eAED:0.04 QI:194|1|1|1|1|1|6|272|362; (*GB) gi|225456463|ref|XP_002284474.1| (e_value=0.0) PREDICTED: phosphate carrier protein, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=1e-115) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=0.0) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc06g072510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41107571-41109775 transcript_region:SL2.40ch06:41107571..41109775+ go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00000177g0011.1 protein AED:0.09 eAED:0.09 QI:137|1|1|1|1|1|7|356|261; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=7e-179) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=2e-180) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=2e-152) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=7e-176) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00000177g0012.1 protein AED:0.35 eAED:0.35 QI:33|0.71|0.62|0.75|1|1|8|510|259; (*GB) gi|224120372|ref|XP_002318313.1| (e_value=1e-96) predicted protein [Populus trichocarpa];; (*SWP) sp|Q86UY6|NAA40_HUMAN (e_value=1e-25) N-alpha-acetyltransferase 40 OS=Homo sapiens GN=NAA40 PE=2 SV=1;; (*TAIR) AT1G18335.1 (e_value=4e-79) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr1:6309428-6311326 REVERSE LENGTH=269;; (*ITAG) Solyc06g072500.2.1 (e_value=2e-147) genomic_reference:SL2.40ch06 gene_region:41103361-41106812 transcript_region:SL2.40ch06:41103361..41106812+ go_terms:GO:0008152 functional_description:"N-acetyltransferase (AHRD V1 ***- B6TH38_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00000177g0010.1 protein AED:0.26 eAED:1.00 QI:0|0|0.2|0.8|0|0|5|120|70 NbS00010755g0010.1 protein AED:0.07 eAED:0.11 QI:10|0.66|0.64|0.89|0.75|0.72|37|421|3382; (*GB) gi|297736923|emb|CBI26124.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UTN6|SNF21_SCHPO (e_value=2e-101) Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1;; (*TAIR) AT2G28290.3 (e_value=0.0) | Symbols: SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12056771-12072950 FORWARD LENGTH=3543;; (*ITAG) Solyc11g062010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45838303-45866988 transcript_region:SL2.40ch11:45838303..45866988+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1 (AHRD V1 *--- CHD1_DROME); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00008150g0001.1 protein AED:0.03 eAED:0.18 QI:0|0.5|0.66|1|1|1|3|0|240; (*GB) gi|356517590|ref|XP_003527470.1| (e_value=3e-50) PREDICTED: myb-related protein Zm1-like [Glycine max];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=4e-43) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT1G79180.1 (e_value=1e-46) | Symbols: ATMYB63, MYB63 | myb domain protein 63 | chr1:29786509-29787589 FORWARD LENGTH=294;; (*ITAG) Solyc07g054960.1.1 (e_value=2e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60445125-60446521 transcript_region:SL2.40ch07:60445125..60446521- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 *--* B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbC25859119g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|1|1|3|0|122; (*GB) gi|224108295|ref|XP_002314792.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAB7|PXG4_ARATH (e_value=1e-45) Probable peroxygenase 4 OS=Arabidopsis thaliana GN=PXG4 PE=1 SV=1;; (*TAIR) AT1G70670.1 (e_value=1e-46) | Symbols: | Caleosin-related family protein | chr1:26644830-26645970 FORWARD LENGTH=195;; (*ITAG) Solyc01g005400.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:280019-283591 transcript_region:SL2.40ch01:280019..283591+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00034389g0002.1 protein AED:0.22 eAED:0.22 QI:292|0.5|0.6|1|1|1|5|253|258; (*GB) gi|224120318|ref|XP_002331018.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g007610.2.1 (e_value=3e-81) genomic_reference:SL2.40ch07 gene_region:2267268-2271182 transcript_region:SL2.40ch07:2267268..2271182+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 *--- B9DHX0_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00004324g0019.1 protein AED:0.20 eAED:0.62 QI:0|0|0.5|1|0|0|2|0|104 NbS00004324g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|306; (*GB) gi|224059070|ref|XP_002299701.1| (e_value=6e-168) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZNR6|PDX12_ARATH (e_value=5e-163) Probable pyridoxal biosynthesis protein PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1;; (*TAIR) AT3G16050.1 (e_value=4e-164) | Symbols: A37, ATPDX1.2, PDX1.2 | pyridoxine biosynthesis 1.2 | chr3:5444121-5445065 REVERSE LENGTH=314;; (*ITAG) Solyc03g120090.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:62641034-62641951 transcript_region:SL2.40ch03:62641034..62641951+ go_terms:GO:0046982,GO:0042803 functional_description:"Pyridoxal biosynthesis lyase pdxS (AHRD V1 ***- Q2RMJ0_MOOTA); contains Interpro domain(s) IPR001852 Vitamin B6 biosynthesis protein "; GO:0046982,GO:0042803 NbS00004324g0004.1 protein AED:0.10 eAED:0.11 QI:0|0.71|0.5|1|1|1|8|0|938; (*GB) gi|147814937|emb|CAN74744.1| (e_value=0.0) hypothetical protein VITISV_033250 [Vitis vinifera];; (*SWP) sp|Q15269|PWP2_HUMAN (e_value=0.0) Periodic tryptophan protein 2 homolog OS=Homo sapiens GN=PWP2 PE=1 SV=2;; (*TAIR) AT1G15440.1 (e_value=0.0) | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2 | chr1:5306159-5309460 REVERSE LENGTH=900;; (*ITAG) Solyc03g120080.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62626896-62632505 transcript_region:SL2.40ch03:62626896..62632505+ go_terms:GO:0030515 functional_description:"Periodic tryptophan protein 2 (AHRD V1 **-- D0MSR7_PHYIN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00004324g0020.1 protein AED:0.12 eAED:0.15 QI:161|1|0.83|1|1|0.83|6|0|474; (*GB) gi|255550038|ref|XP_002516070.1| (e_value=2e-81) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G79910.1 (e_value=2e-65) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:30055050-30057011 FORWARD LENGTH=381;; (*ITAG) Solyc03g120120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62663803-62666863 transcript_region:SL2.40ch03:62663803..62666863+ functional_description:"IST1 homolog (AHRD V1 *--- D3PJN2_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00004324g0018.1 protein AED:0.16 eAED:0.30 QI:10|0|0|1|0|0|2|0|231; (*GB) gi|356521973|ref|XP_003529624.1| (e_value=3e-57) PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein CACL-like [Glycine max];; (*SWP) sp|Q5HZE0|MCATL_RAT (e_value=3e-28) Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1;; (*TAIR) AT1G79900.1 (e_value=2e-59) | Symbols: ATMBAC2, BAC2 | Mitochondrial substrate carrier family protein | chr1:30052524-30053599 REVERSE LENGTH=296;; (*ITAG) Solyc06g066680.2.1 (e_value=1e-66) genomic_reference:SL2.40ch06 gene_region:38284835-38287950 transcript_region:SL2.40ch06:38284835..38287950- go_terms:GO:0015227 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- D2VIZ2_NAEGR); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015227 NbS00004324g0022.1 protein AED:0.25 eAED:0.54 QI:0|0|0|1|0|0|2|0|80 NbS00026283g0010.1 protein AED:0.28 eAED:0.28 QI:70|1|0.75|1|0.66|0.5|4|0|233; (*GB) gi|224118714|ref|XP_002317888.1| (e_value=3e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18060.1 (e_value=1e-70) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6212065-6213314 REVERSE LENGTH=226;; (*ITAG) Solyc06g069030.2.1 (e_value=1e-104) genomic_reference:SL2.40ch06 gene_region:39227428-39229756 transcript_region:SL2.40ch06:39227428..39229756+ functional_description:"PAP fibrillin domain containing protein expressed (AHRD V1 **-- D8L9T8_WHEAT)"; NbS00026283g0012.1 protein AED:0.36 eAED:0.39 QI:64|0.88|0.8|1|0.77|0.8|10|0|315; (*GB) gi|1009234|gb|AAA79033.1| (e_value=0.0) SUP2, partial [Nicotiana tabacum];; (*SWP) sp|Q8R050|ERF3A_MOUSE (e_value=2e-90) Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=2;; (*TAIR) AT1G18070.2 (e_value=1e-169) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr1:6214236-6218211 REVERSE LENGTH=532;; (*ITAG) Solyc06g069020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39212135-39224003 transcript_region:SL2.40ch06:39212135..39224003+ go_terms:GO:0005525,GO:0006415 functional_description:"Elongation factor 1 alpha (AHRD V1 ***- Q2F6A7_BOMMO); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0006415 NbS00026283g0007.1 protein AED:0.56 eAED:0.57 QI:4|1|0.33|1|1|1|3|0|72; (*GB) gi|1009234|gb|AAA79033.1| (e_value=2e-34) SUP2, partial [Nicotiana tabacum];; (*SWP) sp|Q7YZN9|ERF3_DICDI (e_value=1e-26) Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1;; (*TAIR) AT1G18070.2 (e_value=4e-34) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr1:6214236-6218211 REVERSE LENGTH=532;; (*ITAG) Solyc06g069020.2.1 (e_value=1e-35) genomic_reference:SL2.40ch06 gene_region:39212135-39224003 transcript_region:SL2.40ch06:39212135..39224003+ go_terms:GO:0005525,GO:0006415 functional_description:"Elongation factor 1 alpha (AHRD V1 ***- Q2F6A7_BOMMO); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0006415 NbS00026283g0011.1 protein AED:0.59 eAED:1.00 QI:0|0|0|1|0|0|2|0|86 NbS00015067g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc10g009480.2.1 (e_value=1e-17) genomic_reference:SL2.40ch10 gene_region:3583862-3585967 transcript_region:SL2.40ch10:3583862..3585967+ functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6TH76_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00015067g0012.1 protein AED:0.26 eAED:0.26 QI:351|0.91|0.91|1|0.91|0.83|24|0|1433; (*GB) gi|359489732|ref|XP_002278370.2| (e_value=0.0) PREDICTED: protein KIAA0664 homolog [Vitis vinifera];; (*SWP) sp|O15818|K0664_DICDI (e_value=4e-45) Protein KIAA0664 homolog OS=Dictyostelium discoideum GN=cluA PE=1 SV=2;; (*TAIR) AT1G01320.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1787;; (*ITAG) Solyc01g095900.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78800171-78813838 transcript_region:SL2.40ch01:78800171..78813838+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_ASPCL); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00015067g0011.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0.5|0.33|3|0|403; (*GB) gi|359489732|ref|XP_002278370.2| (e_value=1e-51) PREDICTED: protein KIAA0664 homolog [Vitis vinifera];; (*TAIR) AT1G01320.2 (e_value=4e-34) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1787;; (*ITAG) Solyc01g095900.2.1 (e_value=2e-120) genomic_reference:SL2.40ch01 gene_region:78800171-78813838 transcript_region:SL2.40ch01:78800171..78813838+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_ASPCL); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00057453g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|485; (*GB) gi|209954713|dbj|BAG80547.1| (e_value=0.0) glycosyltransferase [Lycium barbarum];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=0.0) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=0.0) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc04g074380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57953589-57955266 transcript_region:SL2.40ch04:57953589..57955266- go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00057453g0006.1 protein AED:0.00 eAED:0.00 QI:33|1|1|1|1|1|2|81|495; (*GB) gi|209954723|dbj|BAG80552.1| (e_value=0.0) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SK82|U85A1_ARATH (e_value=0.0) UDP-glycosyltransferase 85A1 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1;; (*TAIR) AT1G22400.1 (e_value=0.0) | Symbols: UGT85A1, ATUGT85A1 | UDP-Glycosyltransferase superfamily protein | chr1:7903851-7906607 REVERSE LENGTH=489;; (*ITAG) Solyc04g074330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57928104-57930038 transcript_region:SL2.40ch04:57928104..57930038+ go_terms:GO:0015020 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-* Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00053054g0007.1 protein AED:0.06 eAED:0.06 QI:26|1|1|1|0.5|0.66|3|91|377; (*GB) gi|224116148|ref|XP_002317225.1| (e_value=2e-139) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79760.1 (e_value=8e-50) | Symbols: DTA4 | downstream target of AGL15-4 | chr1:30012054-30013042 FORWARD LENGTH=299;; (*ITAG) Solyc03g120970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63244294-63246602 transcript_region:SL2.40ch03:63244294..63246602- go_terms:GO:0016491 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 ***- G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00053054g0006.1 protein AED:0.10 eAED:0.10 QI:0|1|1|1|1|1|9|209|322; (*GB) gi|145361431|ref|NP_849666.2| (e_value=2e-77) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G15215.2 (e_value=4e-80) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5238096-5239770 FORWARD LENGTH=258;; (*ITAG) Solyc03g120940.2.1 (e_value=1e-141) genomic_reference:SL2.40ch03 gene_region:63232523-63237150 transcript_region:SL2.40ch03:63232523..63237150- functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 *-*- Q0DC52_ORYSJ)"; NbS00015123g0004.1 protein AED:0.27 eAED:0.27 QI:89|1|1|1|1|1|3|425|186; (*GB) gi|49204581|dbj|BAD24657.1| (e_value=5e-53) xylogen protein 1 [Zinnia elegans];; (*SWP) sp|Q8VYI9|NLTL5_ARATH (e_value=2e-42) Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1;; (*TAIR) AT5G64080.1 (e_value=1e-43) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:25645475-25646638 REVERSE LENGTH=182;; (*ITAG) Solyc01g105010.2.1 (e_value=5e-92) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00025204g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|519; (*GB) gi|114152675|gb|ABI52585.1| (e_value=0.0) pollen-specific protein [Camellia sinensis];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55570.1 (e_value=0.0) | Symbols: sks12 | SKU5 similar 12 | chr1:20757882-20759771 FORWARD LENGTH=555;; (*ITAG) Solyc03g063150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:30757050-30759159 transcript_region:SL2.40ch03:30757050..30759159+ go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00055558g0004.1 protein AED:0.18 eAED:0.18 QI:0|1|0.66|1|1|0.66|3|0|502; (*GB) gi|225455058|ref|XP_002263812.1| (e_value=0.0) PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310-like [Vitis vinifera];; (*SWP) sp|Q9C823|Y1523_ARATH (e_value=0.0) C-type lectin receptor-like tyrosine-protein kinase At1g52310 OS=Arabidopsis thaliana GN=At1g52310 PE=2 SV=1;; (*TAIR) AT1G52310.1 (e_value=0.0) | Symbols: | protein kinase family protein / C-type lectin domain-containing protein | chr1:19478401-19480462 FORWARD LENGTH=552;; (*ITAG) Solyc02g068370.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32902478-32907263 transcript_region:SL2.40ch02:32902478..32907263+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00010476g0003.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.5|1|1|2|0|102; (*GB) gi|224067198|ref|XP_002302404.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJW4|NDUS4_ARATH (e_value=2e-14) NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1;; (*TAIR) AT5G67590.1 (e_value=1e-15) | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-related | chr5:26958073-26959356 FORWARD LENGTH=154;; (*ITAG) Solyc02g092270.2.1 (e_value=6e-18) genomic_reference:SL2.40ch02 gene_region:47982328-47987024 transcript_region:SL2.40ch02:47982328..47987024- go_terms:GO:0005743 functional_description:"NADH dehydrogenase (AHRD V1 -**- NDUS4_RAT); contains Interpro domain(s) IPR006885 ETC complex I subunit conserved region "; GO:0005743 NbS00010476g0011.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0.5|2|0|717; (*GB) gi|225458854|ref|XP_002283343.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267832 [Vitis vinifera];; (*TAIR) AT4G31540.1 (e_value=3e-77) | Symbols: ATEXO70G1, EXO70G1 | exocyst subunit exo70 family protein G1 | chr4:15284739-15286802 REVERSE LENGTH=687;; (*ITAG) Solyc04g077760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60262000-60264613 transcript_region:SL2.40ch04:60262000..60264613+ go_terms:GO:0000145 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00010476g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|356; (*GB) gi|255538038|ref|XP_002510084.1| (e_value=1e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G27461.1 (e_value=6e-75) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:9537948-9539012 REVERSE LENGTH=354;; (*ITAG) Solyc04g077740.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:60251147-60252229 transcript_region:SL2.40ch04:60251147..60252229+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044224g0007.1 protein AED:0.39 eAED:0.39 QI:0|0|0.33|0.33|0|0|3|421|58 NbS00044224g0008.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|3|0|175; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-37) hypothetical protein [Nicotiana tabacum]; NbC24853224g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|85; (*GB) gi|224131232|ref|XP_002321033.1| (e_value=4e-38) glutaredoxin [Populus trichocarpa];; (*SWP) sp|Q9LYC8|GRXS6_ARATH (e_value=7e-35) Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1;; (*TAIR) AT3G62930.1 (e_value=5e-36) | Symbols: | Thioredoxin superfamily protein | chr3:23261538-23261846 REVERSE LENGTH=102;; (*ITAG) Solyc04g011860.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4274482-4274790 transcript_region:SL2.40ch04:4274482..4274790+ go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 ***- B9I9V9_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00003061g0005.1 protein AED:0.33 eAED:0.42 QI:0|0|0|0.66|0|0|3|0|134; (*ITAG) Solyc05g005530.2.1 (e_value=6e-34) genomic_reference:SL2.40ch05 gene_region:372633-374501 transcript_region:SL2.40ch05:372633..374501- functional_description:"Senescence-associated protein 5 (AHRD V1 *-*- O81655_HEMSP)"; NbS00003061g0006.1 protein AED:0.28 eAED:0.37 QI:0|0|0|1|0|0|2|0|101; (*ITAG) Solyc05g005530.2.1 (e_value=1e-34) genomic_reference:SL2.40ch05 gene_region:372633-374501 transcript_region:SL2.40ch05:372633..374501- functional_description:"Senescence-associated protein 5 (AHRD V1 *-*- O81655_HEMSP)"; NbS00024483g0014.1 protein AED:0.06 eAED:0.06 QI:86|1|1|1|0.5|0.66|3|48|239; (*GB) gi|359491819|ref|XP_002270576.2| (e_value=8e-140) PREDICTED: NAC domain-containing protein 74 [Vitis vinifera];; (*SWP) sp|Q7GCL7|NAC74_ORYSJ (e_value=2e-63) NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1;; (*TAIR) AT3G17730.1 (e_value=6e-128) | Symbols: anac057, NAC057 | NAC domain containing protein 57 | chr3:6064379-6065813 FORWARD LENGTH=246;; (*ITAG) Solyc03g098190.2.1 (e_value=2e-157) genomic_reference:SL2.40ch03 gene_region:53977592-53982305 transcript_region:SL2.40ch03:53977592..53982305- go_terms:GO:0016563,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563,GO:0003700 NbS00024483g0013.1 protein AED:0.08 eAED:0.08 QI:547|1|1|1|0.8|0.72|11|345|718; (*GB) gi|225464265|ref|XP_002271012.1| (e_value=0.0) PREDICTED: homeobox-leucine zipper protein HDG11-like [Vitis vinifera];; (*SWP) sp|Q9FX31|HDG11_ARATH (e_value=0.0) Homeobox-leucine zipper protein HDG11 OS=Arabidopsis thaliana GN=HDG11 PE=1 SV=1;; (*TAIR) AT1G73360.1 (e_value=0.0) | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS 11 | chr1:27578893-27581820 REVERSE LENGTH=722;; (*ITAG) Solyc03g098200.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53990300-53993447 transcript_region:SL2.40ch03:53990300..53993447- go_terms:GO:0003700 functional_description:"Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 (AHRD V1 **** PDF2_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003700 NbS00024483g0015.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.25|1|1|1|4|0|173; (*GB) gi|225441262|ref|XP_002274425.1| (e_value=6e-91) PREDICTED: tubulin-specific chaperone B isoform 2 [Vitis vinifera];; (*SWP) sp|Q20728|TBCB_CAEEL (e_value=1e-24) Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3 PE=1 SV=1;; (*TAIR) AT3G10220.1 (e_value=7e-84) | Symbols: | tubulin folding cofactor B | chr3:3161977-3164037 FORWARD LENGTH=243;; (*ITAG) Solyc03g098170.2.1 (e_value=7e-95) genomic_reference:SL2.40ch03 gene_region:53948518-53955412 transcript_region:SL2.40ch03:53948518..53955412- go_terms:GO:0043014 functional_description:"Tubulin folding cofactor B (AHRD V1 **-* D7L8W6_ARALY); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; GO:0043014 NbS00024483g0016.1 protein AED:0.06 eAED:0.06 QI:75|1|1|1|0.85|0.75|8|744|359; (*GB) gi|224125852|ref|XP_002329733.1| (e_value=2e-163) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53345.1 (e_value=3e-145) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). | chr1:19902561-19903538 FORWARD LENGTH=325;; (*ITAG) Solyc03g098180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53969222-53976124 transcript_region:SL2.40ch03:53969222..53976124+ go_terms:GO:0006468 functional_description:"Phosphoesterase dhha1 (AHRD V1 ***- A2A059_9BACT)"; GO:0006468 NbS00017275g0013.1 protein AED:0.21 eAED:0.21 QI:0|1|0.33|1|0.5|0.66|3|0|492; (*GB) gi|255561048|ref|XP_002521536.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=9e-37) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT3G50930.1 (e_value=0.0) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc03g033790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9684519-9688514 transcript_region:SL2.40ch03:9684519..9688514+ go_terms:GO:0016887 functional_description:"Cell division protease ftsH homolog 3 (AHRD V1 *--- FTSH3_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00017275g0009.1 protein AED:0.28 eAED:0.28 QI:0|0.71|0.75|1|0.85|0.75|8|270|232; (*GB) gi|17380185|sp|O82531.1|PSB1_PETHY (e_value=4e-126) RecName: Full=Proteasome subunit beta type-1; AltName: Full=20S proteasome alpha subunit F; AltName: Full=20S proteasome subunit beta-6;; (*SWP) sp|O82531|PSB1_PETHY (e_value=1e-127) Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1;; (*TAIR) AT3G60820.3 (e_value=7e-117) | Symbols: PBF1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:22472038-22473809 REVERSE LENGTH=223;; (*ITAG) Solyc02g084920.2.1 (e_value=5e-131) genomic_reference:SL2.40ch02 gene_region:42548635-42554662 transcript_region:SL2.40ch02:42548635..42554662- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SY64_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00017275g0008.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|64; (*ITAG) Solyc02g062550.2.1 (e_value=3e-17) genomic_reference:SL2.40ch02 gene_region:28853140-28855308 transcript_region:SL2.40ch02:28853140..28855308- go_terms:GO:0042623,GO:0005515 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_HELPY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00017275g0015.1 protein AED:0.17 eAED:0.50 QI:0|0.5|0.33|1|0.5|0.33|3|0|176; (*GB) gi|225424305|ref|XP_002284679.1| (e_value=1e-42) PREDICTED: uncharacterized protein LOC100250842 [Vitis vinifera];; (*TAIR) AT2G01590.1 (e_value=6e-27) | Symbols: CRR3 | chlororespiratory reduction 3 | chr2:266675-267379 FORWARD LENGTH=174;; (*ITAG) Solyc05g026570.2.1 (e_value=7e-51) genomic_reference:SL2.40ch05 gene_region:42051867-42053112 transcript_region:SL2.40ch05:42051867..42053112+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038623g0001.1 protein AED:0.01 eAED:0.01 QI:664|1|0.5|1|0|0|2|0|521; (*GB) gi|225447596|ref|XP_002272334.1| (e_value=0.0) PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera];; (*SWP) sp|Q9LDL7|PAT1_ARATH (e_value=0.0) Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G48150.2 (e_value=0.0) | Symbols: PAT1 | GRAS family transcription factor | chr5:19522497-19524053 REVERSE LENGTH=490;; (*ITAG) Solyc07g047950.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:56497775-56499412 transcript_region:SL2.40ch07:56497775..56499412+ go_terms:GO:0003700,GO:0004871 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IAQ7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0004871 NbS00010604g0002.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|1|1|2|0|648; (*GB) gi|359488501|ref|XP_002280135.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261660 [Vitis vinifera];; (*SWP) sp|Q9VSJ8|EXOC7_DROME (e_value=7e-12) Exocyst complex component 7 OS=Drosophila melanogaster GN=exo70 PE=1 SV=2;; (*TAIR) AT3G29400.1 (e_value=0.0) | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo70 family protein E1 | chr3:11297339-11299315 REVERSE LENGTH=658;; (*ITAG) Solyc02g088800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45346206-45348185 transcript_region:SL2.40ch02:45346206..45348185- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00061323g0003.1 protein AED:0.01 eAED:0.01 QI:48|1|1|1|0.66|0.75|4|370|364; (*GB) gi|225448882|ref|XP_002270667.1| (e_value=2e-175) PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Vitis vinifera];; (*SWP) sp|D4N501|DIOX2_PAPSO (e_value=5e-61) Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1;; (*TAIR) AT2G36690.1 (e_value=3e-162) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc11g007890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2114654-2117507 transcript_region:SL2.40ch11:2114654..2117507+ go_terms:GO:0016491,GO:0055114 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 4 (AHRD V1 **-- ACCO4_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00015946g0010.1 protein AED:0.18 eAED:0.18 QI:0|0.76|0.71|1|0.61|0.71|14|0|412; (*GB) gi|156763844|emb|CAO99124.1| (e_value=0.0) putative reductase [Nicotiana tabacum];; (*SWP) sp|Q93Z70|ARGC_ARATH (e_value=0.0) Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2;; (*TAIR) AT2G19940.2 (e_value=0.0) | Symbols: | oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding | chr2:8613168-8615649 FORWARD LENGTH=401;; (*ITAG) Solyc01g108660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87650490-87656659 transcript_region:SL2.40ch01:87650490..87656659- go_terms:GO:0008800 functional_description:"N-acetyl-gamma-glutamyl-phosphate reductase (AHRD V1 ***- A7WPL0_TOBAC); contains Interpro domain(s) IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase "; GO:0008800 NbS00015946g0002.1 protein AED:0.33 eAED:0.33 QI:0|1|0.66|1|0.5|0.66|3|346|190; (*GB) gi|255561651|ref|XP_002521835.1| (e_value=7e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G49510.1 (e_value=8e-67) | Symbols: emb1273 | embryo defective 1273 | chr1:18327026-18328147 FORWARD LENGTH=240;; (*ITAG) Solyc01g108650.2.1 (e_value=2e-113) genomic_reference:SL2.40ch01 gene_region:87646065-87649124 transcript_region:SL2.40ch01:87646065..87649124- functional_description:"Unknown Protein (AHRD V1)"; NbS00015946g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|224123616|ref|XP_002330165.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C8Z7|GDL91_ARATH (e_value=2e-34) GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1;; (*TAIR) AT5G45910.1 (e_value=1e-35) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18620420-18622264 REVERSE LENGTH=372;; (*ITAG) Solyc01g108640.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00007658g0013.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|383; (*GB) gi|255554809|ref|XP_002518442.1| (e_value=1e-179) Pectate lyase precursor, putative [Ricinus communis];; (*SWP) sp|O65388|PLY2_ARATH (e_value=3e-179) Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2;; (*TAIR) AT1G11920.1 (e_value=2e-180) | Symbols: | Pectin lyase-like superfamily protein | chr1:4023667-4025097 REVERSE LENGTH=384;; (*ITAG) Solyc02g080910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39588263-39593564 transcript_region:SL2.40ch02:39588263..39593564- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 *-** D7ME84_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00007658g0014.1 protein AED:0.08 eAED:0.08 QI:0|0.66|0.5|1|1|1|4|0|396; (*GB) gi|224118050|ref|XP_002331545.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65456|PLY16_ARATH (e_value=0.0) Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1;; (*TAIR) AT4G22080.1 (e_value=0.0) | Symbols: RHS14 | root hair specific 14 | chr4:11700734-11702553 REVERSE LENGTH=394;; (*ITAG) Solyc02g080910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39588263-39593564 transcript_region:SL2.40ch02:39588263..39593564- go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 *-** D7ME84_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00007658g0016.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|0|0.5|2|0|164; (*GB) gi|224118058|ref|XP_002331547.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11925.1 (e_value=6e-29) | Symbols: | Stigma-specific Stig1 family protein | chr1:4026195-4026617 REVERSE LENGTH=140;; (*ITAG) Solyc02g080920.1.1 (e_value=3e-82) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39596196-39596690 transcript_region:SL2.40ch02:39596196..39596690- functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00007658g0003.1 protein AED:0.26 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|224118058|ref|XP_002331547.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G11925.1 (e_value=2e-19) | Symbols: | Stigma-specific Stig1 family protein | chr1:4026195-4026617 REVERSE LENGTH=140;; (*ITAG) Solyc02g080920.1.1 (e_value=2e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:39596196-39596690 transcript_region:SL2.40ch02:39596196..39596690- functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00007658g0002.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|3|0|296; (*GB) gi|225444293|ref|XP_002263584.1| (e_value=2e-157) PREDICTED: uncharacterized protein LOC100250418 [Vitis vinifera];; (*TAIR) AT1G11915.1 (e_value=1e-124) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4021830-4023084 FORWARD LENGTH=329;; (*ITAG) Solyc02g080900.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39586431-39587905 transcript_region:SL2.40ch02:39586431..39587905+ functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 **-- Q9FGR6_ARATH)"; NbC26187909g0002.1 protein AED:0.20 eAED:0.20 QI:216|0.85|0.87|1|0.14|0.37|8|88|154; (*GB) gi|224054853|ref|XP_002298376.1| (e_value=5e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2KIP8|HACD2_BOVIN (e_value=4e-23) 3-hydroxyacyl-CoA dehydratase 2 OS=Bos taurus GN=PTPLB PE=2 SV=2;; (*TAIR) AT5G59770.1 (e_value=6e-48) | Symbols: | Protein-tyrosine phosphatase-like, PTPLA | chr5:24079521-24081195 REVERSE LENGTH=272;; (*ITAG) Solyc11g073130.1.1 (e_value=2e-77) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:53300559-53304883 transcript_region:SL2.40ch11:53300559..53304883+ functional_description:"Protein tyrosine phosphatase 1B (AHRD V1 *-*- D9IVF2_STRIE); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; NbS00061328g0005.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0.33|1|1|0.66|3|271|169; (*GB) gi|255584446|ref|XP_002532954.1| (e_value=4e-54) translation initiation factor eif-2b alpha subunit, putative [Ricinus communis];; (*TAIR) AT1G72340.1 (e_value=7e-54) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr1:27236898-27238482 FORWARD LENGTH=382;; (*ITAG) Solyc12g049580.1.1 (e_value=5e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46664001-46668223 transcript_region:SL2.40ch12:46664001..46668223- go_terms:GO:0044237 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- MTNA_CLOTH); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0044237 NbS00049387g0002.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.5|0|0|2|0|59 NbS00018254g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|282; (*GB) gi|224123462|ref|XP_002330320.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15760.1 (e_value=1e-33) | Symbols: | Protein of unknown function (DUF1645) | chr2:6865807-6866754 REVERSE LENGTH=315;; (*ITAG) Solyc01g108440.2.1 (e_value=9e-55) genomic_reference:SL2.40ch01 gene_region:87531095-87532380 transcript_region:SL2.40ch01:87531095..87532380- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00010151g0010.1 protein AED:0.27 eAED:0.31 QI:0|0.45|0.66|0.83|0.81|0.75|12|314|429; (*GB) gi|359473086|ref|XP_003631247.1| (e_value=3e-118) PREDICTED: choline-phosphate cytidylyltransferase B-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9Y5K3|PCY1B_HUMAN (e_value=6e-63) Choline-phosphate cytidylyltransferase B OS=Homo sapiens GN=PCYT1B PE=1 SV=1;; (*TAIR) AT2G32260.1 (e_value=2e-106) | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidylyltransferase | chr2:13697645-13700241 FORWARD LENGTH=332;; (*ITAG) Solyc02g068430.2.1 (e_value=3e-136) genomic_reference:SL2.40ch02 gene_region:32957930-32965109 transcript_region:SL2.40ch02:32957930..32965109- go_terms:GO:0004306,GO:0004105 functional_description:"Choline-phosphate cytidylyltransferase B (AHRD V1 **** B4F7T8_MAIZE); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306,GO:0004105 NbS00010151g0011.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.75|1|0.66|1|4|0|524; (*GB) gi|356510814|ref|XP_003524129.1| (e_value=0.0) PREDICTED: polygalacturonase QRT3-like [Glycine max];; (*SWP) sp|O49432|QRT3_ARATH (e_value=3e-107) Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1;; (*TAIR) AT4G20040.1 (e_value=6e-166) | Symbols: | Pectin lyase-like superfamily protein | chr4:10847348-10848963 REVERSE LENGTH=483;; (*ITAG) Solyc02g068410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32938286-32942722 transcript_region:SL2.40ch02:32938286..32942722+ go_terms:GO:0004650 functional_description:"AT4G20050-like protein (Fragment) (AHRD V1 *-*- D6PQZ2_9BRAS); contains Interpro domain(s) IPR011050 Pectin lyase fold/virulence factor "; GO:0004650 NbS00037444g0004.1 protein AED:0.08 eAED:0.08 QI:351|1|1|1|0.66|0.5|4|832|270; (*GB) gi|297741510|emb|CBI32642.3| (e_value=4e-30) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g084420.1.1 (e_value=8e-34) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63288977-63290725 transcript_region:SL2.40ch10:63288977..63290725- functional_description:"Unknown Protein (AHRD V1)"; NbS00011699g0014.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0.5|0.33|3|0|498; (*GB) gi|225435151|ref|XP_002281729.1| (e_value=2e-131) PREDICTED: chitinase 2 [Vitis vinifera];; (*SWP) sp|Q7M443|CHIT2_TULBA (e_value=3e-111) Chitinase 2 OS=Tulipa bakeri PE=1 SV=1;; (*ITAG) Solyc11g072750.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53043911-53044939 transcript_region:SL2.40ch11:53043911..53044939- go_terms:GO:0005975 functional_description:"Chitinase a (AHRD V1 ***- Q7M1R1_9ASPA); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00011699g0019.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0|2|0|67 NbS00011699g0016.1 protein AED:0.65 eAED:0.65 QI:36|0|0|0.6|0.75|0.6|5|0|193; (*GB) gi|168009054|ref|XP_001757221.1| (e_value=1e-64) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q5ZL98|RPC1_CHICK (e_value=6e-54) DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1;; (*TAIR) AT5G60040.2 (e_value=6e-56) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=5e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00011699g0017.1 protein AED:0.01 eAED:0.01 QI:266|1|1|1|1|1|2|189|502; (*GB) gi|225435155|ref|XP_002281741.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g60050 [Vitis vinifera];; (*SWP) sp|Q9LVG9|Y5600_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g60050 OS=Arabidopsis thaliana GN=At5g60050 PE=2 SV=1;; (*TAIR) AT5G60050.1 (e_value=0.0) | Symbols: | BTB/POZ domain-containing protein | chr5:24183680-24185264 REVERSE LENGTH=499;; (*ITAG) Solyc11g072720.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53004187-53006550 transcript_region:SL2.40ch11:53004187..53006550+ go_terms:GO:0005515 functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ); contains Interpro domain(s) IPR000210 BTB/POZ-like "; GO:0005515 NbS00011699g0006.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|242; (*TAIR) AT5G60030.1 (e_value=2e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24172082-24172960 REVERSE LENGTH=292;; (*ITAG) Solyc11g072740.1.1 (e_value=1e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:53040797-53041450 transcript_region:SL2.40ch11:53040797..53041450+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028043g0006.1 protein AED:0.30 eAED:0.30 QI:0|0.92|0.92|1|0.84|0.92|14|369|441; (*GB) gi|255572824|ref|XP_002527344.1| (e_value=0.0) CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9STV4|CIPK8_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1;; (*TAIR) AT4G24400.1 (e_value=0.0) | Symbols: CIPK8, SnRK3.13, PKS11, ATCIPK8 | CBL-interacting protein kinase 8 | chr4:12617379-12620481 FORWARD LENGTH=445;; (*ITAG) Solyc04g076810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59273482-59279274 transcript_region:SL2.40ch04:59273482..59279274- go_terms:GO:0004679 functional_description:"CBL-interacting protein kinase 17 (AHRD V1 **** C4P7W6_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004679 NbS00028043g0002.1 protein AED:0.08 eAED:0.11 QI:0|0|0.33|1|1|1|3|0|738; (*GB) gi|359492976|ref|XP_002283668.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=8e-144) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT4G13650.1 (e_value=6e-145) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064;; (*ITAG) Solyc04g076800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59270700-59273291 transcript_region:SL2.40ch04:59270700..59273291+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00029165g0003.1 protein AED:0.16 eAED:0.18 QI:0|0.75|0.4|1|0|0.2|5|302|414; (*GB) gi|350536271|ref|NP_001234750.1| (e_value=4e-111) chromo domain protein LHP1 [Solanum lycopersicum];; (*SWP) sp|Q944N1|LHP1_SOLLC (e_value=1e-112) Chromo domain protein LHP1 OS=Solanum lycopersicum GN=LHP1 PE=1 SV=2;; (*TAIR) AT5G17690.1 (e_value=1e-27) | Symbols: TFL2, LHP1 | like heterochromatin protein (LHP1) | chr5:5827504-5829537 REVERSE LENGTH=445;; (*ITAG) Solyc01g081500.2.1 (e_value=9e-115) genomic_reference:SL2.40ch01 gene_region:73210934-73216952 transcript_region:SL2.40ch01:73210934..73216952+ go_terms:GO:0003677,GO:0035064 functional_description:"Histone-lysine N-methyltransferase SUV39H2 (AHRD V1 *--* SUV92_CHICK); contains Interpro domain(s) IPR000953 Chromo domain "; GO:0003677,GO:0035064 NbS00047320g0005.1 protein AED:0.39 eAED:0.41 QI:0|0|0|1|1|1|2|0|100; (*ITAG) Solyc10g049530.1.1 (e_value=1e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00047320g0004.1 protein AED:0.41 eAED:0.42 QI:0|0|0|1|0|0|2|0|149; (*ITAG) Solyc10g049530.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00026213g0001.1 protein AED:0.25 eAED:0.25 QI:0|1|0.85|1|1|1|7|0|471; (*GB) gi|76803519|gb|ABA55732.1| (e_value=0.0) ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum];; (*SWP) sp|Q949P1|ABAH1_ARATH (e_value=0.0) Abscisic acid 8'-hydroxylase 1 OS=Arabidopsis thaliana GN=CYP707A1 PE=2 SV=1;; (*TAIR) AT4G19230.1 (e_value=0.0) | Symbols: CYP707A1 | cytochrome P450, family 707, subfamily A, polypeptide 1 | chr4:10521524-10523517 FORWARD LENGTH=467;; (*ITAG) Solyc08g005610.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:477231-479683 transcript_region:SL2.40ch08:477231..479683+ go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00001067g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|1|1|5|235|445; (*GB) gi|225429787|ref|XP_002282746.1| (e_value=0.0) PREDICTED: zinc finger protein 622 [Vitis vinifera];; (*SWP) sp|Q91VY9|ZN622_MOUSE (e_value=1e-25) Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1;; (*TAIR) AT4G31420.1 (e_value=1e-110) | Symbols: | Zinc finger protein 622 | chr4:15245987-15247763 REVERSE LENGTH=404;; (*ITAG) Solyc12g096450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00003740g0007.1 protein AED:0.33 eAED:0.33 QI:92|1|1|1|0.75|0.6|5|305|120; (*GB) gi|730558|sp|P41098.1|RL34_TOBAC (e_value=6e-63) RecName: Full=60S ribosomal protein L34;; (*SWP) sp|P41098|RL34_TOBAC (e_value=2e-64) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G26880.1 (e_value=2e-62) | Symbols: | Ribosomal protein L34e superfamily protein | chr1:9315640-9316681 REVERSE LENGTH=120;; (*ITAG) Solyc05g007560.2.1 (e_value=6e-64) genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00003740g0008.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.5|1|0.66|0.5|4|0|386; (*GB) gi|224140975|ref|XP_002323852.1| (e_value=8e-160) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q9ZVH0|FEZ_ARATH (e_value=5e-100) Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1;; (*TAIR) AT1G26870.1 (e_value=4e-101) | Symbols: FEZ, ANAC009 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:9312856-9314983 FORWARD LENGTH=425;; (*ITAG) Solyc02g087920.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44750151-44751604 transcript_region:SL2.40ch02:44750151..44751604+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00008884g0007.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|293; (*GB) gi|297740781|emb|CBI30963.3| (e_value=2e-124) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q941F1|PLA15_ARATH (e_value=7e-56) Phospholipase A1-Igamma1, chloroplastic OS=Arabidopsis thaliana GN=At1g06800 PE=1 SV=2;; (*TAIR) AT1G30370.1 (e_value=2e-87) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10719169-10720758 REVERSE LENGTH=529;; (*ITAG) Solyc08g022240.1.1 (e_value=2e-146) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:14568792-14570240 transcript_region:SL2.40ch08:14568792..14570240+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like protein (AHRD V1 ***- Q8LF19_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00008884g0006.1 protein AED:0.33 eAED:0.35 QI:0|0|0|1|0|0|2|0|189; (*GB) gi|359483651|ref|XP_003632993.1| (e_value=8e-76) PREDICTED: LOW QUALITY PROTEIN: phospholipase A1-Igamma1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q941F1|PLA15_ARATH (e_value=4e-47) Phospholipase A1-Igamma1, chloroplastic OS=Arabidopsis thaliana GN=At1g06800 PE=1 SV=2;; (*TAIR) AT1G30370.1 (e_value=1e-64) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10719169-10720758 REVERSE LENGTH=529;; (*ITAG) Solyc08g022240.1.1 (e_value=6e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:14568792-14570240 transcript_region:SL2.40ch08:14568792..14570240+ go_terms:GO:0047714,GO:0008970 functional_description:"Lipase-like protein (AHRD V1 ***- Q8LF19_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0047714,GO:0008970 NbS00008884g0110.1 protein AED:0.00 eAED:0.00 QI:275|1|1|1|1|1|2|324|319 NbS00008884g0103.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|90 NbS00012545g0007.1 protein AED:0.00 eAED:0.00 QI:501|1|1|1|0|0.5|2|190|348; (*GB) gi|225431237|ref|XP_002267550.1| (e_value=1e-86) PREDICTED: uncharacterized protein LOC100250664 [Vitis vinifera];; (*TAIR) AT3G51060.1 (e_value=2e-70) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc02g084680.2.1 (e_value=1e-131) genomic_reference:SL2.40ch02 gene_region:42356126-42358282 transcript_region:SL2.40ch02:42356126..42358282+ go_terms:GO:0003700,GO:0046982 functional_description:"Short internodes 2 (AHRD V1 **-- B9MXK1_POPTR); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; GO:0003700,GO:0046982 NbS00022687g0001.1 protein AED:0.21 eAED:0.21 QI:104|1|0.5|1|0|0|2|0|356; (*GB) gi|147810884|emb|CAN67279.1| (e_value=1e-175) hypothetical protein VITISV_022021 [Vitis vinifera];; (*SWP) sp|Q8L736|SKI11_ARATH (e_value=3e-130) F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2;; (*TAIR) AT2G02870.3 (e_value=2e-131) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr2:838378-839781 FORWARD LENGTH=467;; (*ITAG) Solyc03g113010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57366645-57367970 transcript_region:SL2.40ch03:57366645..57367970- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KS27_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00013786g0002.1 protein AED:0.10 eAED:0.12 QI:0|0|0|0.66|1|1|3|0|319; (*GB) gi|225464876|ref|XP_002273038.1| (e_value=4e-97) PREDICTED: F-box protein At2g27310-like [Vitis vinifera];; (*SWP) sp|Q9XIN8|FB119_ARATH (e_value=2e-74) F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310 PE=2 SV=1;; (*TAIR) AT2G27310.1 (e_value=1e-75) | Symbols: | F-box family protein | chr2:11683954-11684967 REVERSE LENGTH=337;; (*ITAG) Solyc10g083230.1.1 (e_value=8e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62412475-62413650 transcript_region:SL2.40ch10:62412475..62413650+ functional_description:"F-box family protein (AHRD V1 ***- B9MYU0_POPTR)"; NbS00012848g0012.1 protein AED:0.00 eAED:0.00 QI:174|1|1|1|1|1|3|146|196; (*GB) gi|165905821|gb|ABY71635.1| (e_value=6e-16) lysine-rich protein [Capsicum frutescens];; (*ITAG) Solyc01g067370.2.1 (e_value=2e-13) genomic_reference:SL2.40ch01 gene_region:68228863-68230526 transcript_region:SL2.40ch01:68228863..68230526+ functional_description:"Pollen-specific lysine-rich protein SBgLR (AHRD V1 *--- Q6JLA6_SOLTU)"; NbS00012848g0004.1 protein AED:0.35 eAED:0.35 QI:0|0.62|0.11|1|1|1|9|0|296; (*GB) gi|297736903|emb|CBI26104.3| (e_value=3e-128) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G18640.1 (e_value=1e-110) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:6213283-6215494 FORWARD LENGTH=357;; (*ITAG) Solyc06g054550.2.1 (e_value=4e-145) genomic_reference:SL2.40ch06 gene_region:33782976-33790802 transcript_region:SL2.40ch06:33782976..33790802- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- B6V3M3_9ROSI); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00015161g0008.1 protein AED:0.24 eAED:0.24 QI:292|0.16|0.42|0.85|0.5|0.42|7|424|124; (*GB) gi|224099675|ref|XP_002311574.1| (e_value=5e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11920.1 (e_value=6e-34) | Symbols: | glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=630;; (*ITAG) Solyc01g008130.2.1 (e_value=2e-47) genomic_reference:SL2.40ch01 gene_region:2274518-2283875 transcript_region:SL2.40ch01:2274518..2283875+ go_terms:GO:0023034,GO:0045454 functional_description:"DEP domain-containing protein 1B (AHRD V1 *--- DEP1B_HUMAN); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00015161g0013.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.66|0|0.33|3|0|184; (*GB) gi|113205244|gb|AAT39318.2| (e_value=2e-17) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00015161g0012.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|165; (*ITAG) Solyc01g094420.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00015161g0006.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|1|1|2|0|97; (*ITAG) Solyc10g049960.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:42759216-42760454 transcript_region:SL2.40ch10:42759216..42760454- functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00048437g0009.1 protein AED:0.11 eAED:0.11 QI:50|0.6|0.33|0.83|0.6|0.33|6|0|779; (*GB) gi|30013669|gb|AAP03877.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum];; (*SWP) sp|O81078|GLR29_ARATH (e_value=0.0) Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1;; (*TAIR) AT2G29100.1 (e_value=0.0) | Symbols: ATGLR2.9, GLR2.9 | glutamate receptor 2.9 | chr2:12501092-12504912 REVERSE LENGTH=940;; (*ITAG) Solyc06g063200.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36311514-36314938 transcript_region:SL2.40ch06:36311514..36314938+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00035696g0008.1 protein AED:0.22 eAED:0.25 QI:852|0.57|0.4|0.95|0.57|0.55|20|146|580; (*GB) gi|359488823|ref|XP_002273685.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera];; (*SWP) sp|A2RUV5|HFM1_XENTR (e_value=3e-71) Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis GN=hfm1 PE=2 SV=1;; (*TAIR) AT3G27730.1 (e_value=0.0) | Symbols: RCK, MER3 | ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133;; (*ITAG) Solyc02g086580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43809226-43817444 transcript_region:SL2.40ch02:43809226..43817444+ go_terms:GO:0004004,GO:0003678 functional_description:"ATP-dependent DNA helicase MER3 (AHRD V1 **** C5FL91_NANOT); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0003678 NbS00020924g0001.1 protein AED:0.10 eAED:0.11 QI:0|0.71|0.75|1|0.85|0.87|8|1326|354; (*GB) gi|147855522|emb|CAN83854.1| (e_value=2e-99) hypothetical protein VITISV_031103 [Vitis vinifera];; (*SWP) sp|P58223|Y4837_ARATH (e_value=8e-13) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G15270.1 (e_value=1e-21) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc01g090480.2.1 (e_value=1e-132) genomic_reference:SL2.40ch01 gene_region:75921932-75927208 transcript_region:SL2.40ch01:75921932..75927208- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00020924g0009.1 protein AED:0.35 eAED:0.38 QI:0|0.45|0.25|0.75|0.72|0.58|12|0|722; (*GB) gi|359475869|ref|XP_002283146.2| (e_value=7e-149) PREDICTED: uncharacterized protein LOC100252640 [Vitis vinifera];; (*SWP) sp|Q5XET6|PUS3_ARATH (e_value=2e-70) RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1;; (*TAIR) AT2G25290.3 (e_value=7e-136) | Symbols: Phox1 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr2:10766192-10768517 REVERSE LENGTH=745;; (*ITAG) Solyc08g029190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:22914324-22916720 transcript_region:SL2.40ch08:22914324..22916720+ go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT9_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00036454g0010.1 protein AED:0.08 eAED:0.08 QI:193|1|1|1|0.8|0.90|11|176|562; (*GB) gi|225463067|ref|XP_002268993.1| (e_value=0.0) PREDICTED: NEDD8 ultimate buster 1 [Vitis vinifera];; (*SWP) sp|P54729|NUB1_MOUSE (e_value=4e-27) NEDD8 ultimate buster 1 OS=Mus musculus GN=Nub1 PE=1 SV=2;; (*TAIR) AT2G12550.1 (e_value=0.0) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr2:5114881-5118486 FORWARD LENGTH=562;; (*ITAG) Solyc07g007370.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2106441-2112686 transcript_region:SL2.40ch07:2106441..2112686+ functional_description:"NEDD8 ultimate buster 1 (AHRD V1 **-- C0HB30_SALSA); contains Interpro domain(s) IPR009060 UBA-like "; NbS00036454g0009.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|6|0|615; (*GB) gi|255556938|ref|XP_002519502.1| (e_value=0.0) Transitional endoplasmic reticulum ATPase, putative [Ricinus communis];; (*SWP) sp|P54774|CDC48_SOYBN (e_value=0.0) Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1;; (*TAIR) AT5G03340.1 (e_value=0.0) | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810;; (*ITAG) Solyc06g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42868689-42875665 transcript_region:SL2.40ch06:42868689..42875665+ go_terms:GO:0016787,GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ARATH); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0016787,GO:0005524,GO:0017111,GO:0005488 NbS00019714g0001.1 protein AED:0.03 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|651; (*GB) gi|224137994|ref|XP_002322703.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LTF4|PP429_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1;; (*TAIR) AT5G52630.1 (e_value=0.0) | Symbols: MEF1 | mitochondrial RNAediting factor 1 | chr5:21350375-21352141 FORWARD LENGTH=588;; (*ITAG) Solyc03g063690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:32891552-32893342 transcript_region:SL2.40ch03:32891552..32893342+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MS71_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00019714g0006.1 protein AED:0.09 eAED:0.13 QI:24|0.5|0.33|1|0|0|3|0|195; (*GB) gi|224093232|ref|XP_002309845.1| (e_value=5e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32300.1 (e_value=9e-22) | Symbols: UCC1 | uclacyanin 1 | chr2:13722510-13723464 FORWARD LENGTH=261;; (*ITAG) Solyc12g005710.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:377740-379177 transcript_region:SL2.40ch12:377740..379177- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00019714g0004.1 protein AED:0.59 eAED:0.59 QI:0|0|0|0.25|1|1|4|0|61 NbS00002427g0007.1 protein AED:0.11 eAED:0.11 QI:35|0.66|0.25|1|1|1|4|0|772; (*GB) gi|357933559|dbj|BAL15046.1| (e_value=0.0) glutamate receptor 1.1 [Solanum lycopersicum];; (*SWP) sp|Q9LFN8|GLR26_ARATH (e_value=3e-49) Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2;; (*TAIR) AT5G11180.1 (e_value=2e-50) | Symbols: ATGLR2.6, GLR2.6 | glutamate receptor 2.6 | chr5:3557261-3561575 REVERSE LENGTH=906;; (*ITAG) Solyc04g078860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61113344-61120190 transcript_region:SL2.40ch04:61113344..61120190+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9MVR4_POPTR); contains Interpro domain(s) IPR015683 Glutamate receptor-related "; GO:0005217 NbS00004020g0003.1 protein AED:0.05 eAED:0.05 QI:134|1|1|1|1|1|7|102|307; (*GB) gi|294653508|gb|ADF28628.1| (e_value=5e-153) beta-carotene hydroxylase 2 [Solanum tuberosum];; (*SWP) sp|O49814|BCH2_CAPAN (e_value=3e-147) Beta-carotene hydroxylase 2, chloroplastic (Fragment) OS=Capsicum annuum GN=CA2 PE=2 SV=1;; (*TAIR) AT5G52570.1 (e_value=3e-125) | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene hydroxylase 2 | chr5:21334911-21336887 REVERSE LENGTH=303;; (*ITAG) Solyc03g007960.2.1 (e_value=4e-155) genomic_reference:SL2.40ch03 gene_region:2447872-2450289 transcript_region:SL2.40ch03:2447872..2450289+ go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 2"; GO:0010291 NbS00035117g0014.1 protein AED:0.13 eAED:0.18 QI:0|0.57|0.5|0.87|0.42|0.25|8|0|848; (*GB) gi|255559173|ref|XP_002520608.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc04g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63881553-63887198 transcript_region:SL2.40ch04:63881553..63887198- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 *-*- GTR12_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00035117g0015.1 protein AED:0.16 eAED:0.16 QI:491|1|1|1|0.6|0.5|6|225|901; (*GB) gi|255559169|ref|XP_002520606.1| (e_value=0.0) glutamate receptor 3 plant, putative [Ricinus communis];; (*SWP) sp|Q93YT1|GLR32_ARATH (e_value=0.0) Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2;; (*TAIR) AT4G35290.1 (e_value=0.0) | Symbols: GLUR2, GLR3.2, ATGLR3.2, ATGLUR2 | glutamate receptor 2 | chr4:16790290-16793461 FORWARD LENGTH=912;; (*ITAG) Solyc04g082610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63830521-63835334 transcript_region:SL2.40ch04:63830521..63835334+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00035117g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|225445840|ref|XP_002277887.1| (e_value=2e-166) PREDICTED: homoserine kinase-like [Vitis vinifera];; (*SWP) sp|A4SGN0|KHSE_PROVI (e_value=3e-47) Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=1e-150) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=3e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00044030g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.33|0|0.5|1|1|4|0|159; (*GB) gi|374256013|gb|AEZ00868.1| (e_value=6e-68) putative methionine synthase protein, partial [Elaeis guineensis];; (*SWP) sp|Q42699|METE_CATRO (e_value=8e-66) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT3G03780.3 (e_value=3e-63) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=4e-73) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00030122g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|0.66|3|903|623; (*GB) gi|350535739|ref|NP_001234722.1| (e_value=0.0) LeTIR [Solanum lycopersicum];; (*SWP) sp|Q9LTX2|TIR1L_ARATH (e_value=0.0) Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1;; (*TAIR) AT5G49980.1 (e_value=0.0) | Symbols: AFB5 | auxin F-box protein 5 | chr5:20334420-20336531 REVERSE LENGTH=619;; (*ITAG) Solyc04g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58453329-58456206 transcript_region:SL2.40ch04:58453329..58456206- functional_description:"Auxin F-box protein 5 (AHRD V1 **-- D7MPH1_ARALY); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00038569g0003.1 protein AED:0.40 eAED:0.40 QI:0|1|0.5|1|1|1|2|86|418; (*GB) gi|297733747|emb|CBI14994.3| (e_value=3e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y227|ENTP4_HUMAN (e_value=3e-22) Ectonucleoside triphosphate diphosphohydrolase 4 OS=Homo sapiens GN=ENTPD4 PE=1 SV=1;; (*TAIR) AT4G19180.1 (e_value=9e-54) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr4:10485518-10487868 REVERSE LENGTH=740;; (*ITAG) Solyc05g052490.2.1 (e_value=2e-54) genomic_reference:SL2.40ch05 gene_region:61845448-61849046 transcript_region:SL2.40ch05:61845448..61849046- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 *--- Q6DC46_DANRE); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00037717g0008.1 protein AED:0.23 eAED:0.23 QI:155|1|1|1|1|1|7|754|382; (*GB) gi|296086430|emb|CBI32019.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07040.1 (e_value=9e-162) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). | chr1:2161225-2163035 REVERSE LENGTH=371;; (*ITAG) Solyc05g007060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1644471-1649129 transcript_region:SL2.40ch05:1644471..1649129- functional_description:"Bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein (AHRD V1 **-- A8T8Q5_9VIBR)"; NbS00037717g0009.1 protein AED:0.28 eAED:0.28 QI:565|1|0.66|1|0.8|0.83|6|0|483; (*GB) gi|359473277|ref|XP_003631281.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Vitis vinifera];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT5G15080.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:4886414-4888555 FORWARD LENGTH=493;; (*ITAG) Solyc05g007050.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1637910-1643930 transcript_region:SL2.40ch05:1637910..1643930+ go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00037717g0011.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0|0|2|0|159; (*GB) gi|225438097|ref|XP_002277335.1| (e_value=4e-71) PREDICTED: serine/threonine-protein kinase 19 [Vitis vinifera];; (*TAIR) AT2G20495.1 (e_value=1e-56) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine-threonine protein kinase 19 (InterPro:IPR018865); Has 155 Blast hits to 154 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 5; Plants - 34; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | chr2:8833180-8835034 FORWARD LENGTH=282;; (*ITAG) Solyc06g008350.2.1 (e_value=2e-83) genomic_reference:SL2.40ch06 gene_region:2221135-2228530 transcript_region:SL2.40ch06:2221135..2228530+ functional_description:"Serine/threonine-protein kinase 19 (AHRD V1 ***- B6TW02_MAIZE); contains Interpro domain(s) IPR018865 Serine-threonine protein kinase 19 "; NbS00001856g0003.1 protein AED:0.04 eAED:0.04 QI:91|1|0.66|1|1|1|3|91|792; (*GB) gi|147812462|emb|CAN75064.1| (e_value=6e-43) hypothetical protein VITISV_025472 [Vitis vinifera];; (*TAIR) AT2G16270.1 (e_value=5e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16630.1); Has 1844 Blast hits to 1256 proteins in 271 species: Archae - 6; Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91; Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink). | chr2:7045744-7048313 REVERSE LENGTH=759;; (*ITAG) Solyc01g106750.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86252686-86255230 transcript_region:SL2.40ch01:86252686..86255230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002188g0014.1 protein AED:0.01 eAED:0.01 QI:104|1|1|1|1|1|3|284|198; (*GB) gi|388517015|gb|AFK46569.1| (e_value=3e-59) unknown [Medicago truncatula];; (*TAIR) AT4G22320.1 (e_value=1e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). | chr4:11793129-11794596 REVERSE LENGTH=238;; (*ITAG) Solyc11g012090.1.1 (e_value=3e-93) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5022333-5025981 transcript_region:SL2.40ch11:5022333..5025981- functional_description:"Unknown Protein (AHRD V1)"; NbS00002188g0021.1 protein AED:0.15 eAED:0.15 QI:55|0.8|0.66|1|0.6|0.66|6|0|239; (*GB) gi|359496970|ref|XP_003635387.1| (e_value=8e-121) PREDICTED: acyl-protein thioesterase 1-like [Vitis vinifera];; (*SWP) sp|P0CL94|APTH1_CRYNJ (e_value=2e-36) Acyl-protein thioesterase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CNF02430 PE=3 SV=1;; (*TAIR) AT4G22300.1 (e_value=3e-109) | Symbols: SOBER1 | carboxylesterases | chr4:11787560-11789252 REVERSE LENGTH=262;; (*ITAG) Solyc11g012070.1.1 (e_value=4e-136) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5009272-5013900 transcript_region:SL2.40ch11:5009272..5013900- go_terms:GO:0016787 functional_description:"Acyl-protein thioesterase 1 (AHRD V1 **-- B6U7L3_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0016787 NbS00002188g0003.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|275; (*GB) gi|225469636|ref|XP_002265147.1| (e_value=5e-20) PREDICTED: uncharacterized protein LOC100252669 [Vitis vinifera];; (*TAIR) AT1G12020.1 (e_value=3e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:4062625-4063305 REVERSE LENGTH=226;; (*ITAG) Solyc11g012060.1.1 (e_value=7e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5004069-5004926 transcript_region:SL2.40ch11:5004069..5004926- functional_description:"Unknown Protein (AHRD V1)"; NbS00002188g0024.1 protein AED:0.02 eAED:0.02 QI:174|0.75|0.8|1|0.5|0.4|5|374|96; (*GB) gi|388499020|gb|AFK37576.1| (e_value=1e-51) unknown [Lotus japonicus];; (*SWP) sp|Q5R4Z3|BR44_PONAB (e_value=6e-22) Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1;; (*TAIR) AT4G22310.1 (e_value=6e-51) | Symbols: | Uncharacterised protein family (UPF0041) | chr4:11791443-11792638 FORWARD LENGTH=108;; (*ITAG) Solyc11g012080.1.1 (e_value=1e-58) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5015463-5019291 transcript_region:SL2.40ch11:5015463..5019291+ functional_description:"Brain protein 44 (AHRD V1 **-- B4FWA7_MAIZE); contains Interpro domain(s) IPR005336 Uncharacterised protein family UPF0041 "; NbS00002188g0018.1 protein AED:0.24 eAED:0.24 QI:0|1|0.8|1|1|1|5|0|350; (*GB) gi|37992753|gb|AAR06583.1| (e_value=0.0) glycinamide ribonucleotide transformylase [Solanum tuberosum];; (*SWP) sp|P52423|PUR3_VIGUN (e_value=1e-122) Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata GN=PUR3 PE=2 SV=2;; (*TAIR) AT1G31220.1 (e_value=4e-111) | Symbols: | Formyl transferase | chr1:11157064-11158408 FORWARD LENGTH=292;; (*ITAG) Solyc11g012100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5031094-5035795 transcript_region:SL2.40ch11:5031094..5035795+ go_terms:GO:0006189,GO:0008168,GO:0009058 functional_description:"Phosphoribosylglycinamide formyltransferase (AHRD V1 ***- D7KK96_ARALY); contains Interpro domain(s) IPR002376 Formyl transferase, N-terminal "; GO:0006189,GO:0008168,GO:0009058 NbS00002188g0022.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|1|1|2|0|227; (*GB) gi|464621|sp|P34091.1|RL6_MESCR (e_value=7e-104) RecName: Full=60S ribosomal protein L6; AltName: Full=YL16-like;; (*SWP) sp|P34091|RL6_MESCR (e_value=2e-105) 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1;; (*TAIR) AT1G74060.1 (e_value=2e-101) | Symbols: | Ribosomal protein L6 family protein | chr1:27850033-27851299 REVERSE LENGTH=233;; (*ITAG) Solyc05g054070.2.1 (e_value=3e-114) genomic_reference:SL2.40ch05 gene_region:63196547-63198365 transcript_region:SL2.40ch05:63196547..63198365- go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L6 (AHRD V1 ***- B9RHH3_RICCO); contains Interpro domain(s) IPR000915 Ribosomal protein L6E "; GO:0003735,GO:0003723 NbS00002188g0016.1 protein AED:0.92 eAED:1.00 QI:0|0|0|0.5|0|0|2|0|68 NbS00019112g0005.1 protein AED:0.25 eAED:0.25 QI:472|1|0.5|1|1|1|2|0|465; (*GB) gi|225455732|ref|XP_002273302.1| (e_value=8e-66) PREDICTED: uncharacterized protein LOC100266325 [Vitis vinifera];; (*TAIR) AT3G05670.1 (e_value=6e-23) | Symbols: | RING/U-box protein | chr3:1653888-1657022 FORWARD LENGTH=883;; (*ITAG) Solyc06g069360.2.1 (e_value=4e-180) genomic_reference:SL2.40ch06 gene_region:39497126-39503758 transcript_region:SL2.40ch06:39497126..39503758+ go_terms:GO:0008270 functional_description:"PHD-finger family protein (AHRD V1 *-*- B6U0S2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00019112g0004.1 protein AED:0.47 eAED:0.63 QI:0|0|0|1|0|0|2|0|73; (*ITAG) Solyc06g069360.2.1 (e_value=4e-22) genomic_reference:SL2.40ch06 gene_region:39497126-39503758 transcript_region:SL2.40ch06:39497126..39503758+ go_terms:GO:0008270 functional_description:"PHD-finger family protein (AHRD V1 *-*- B6U0S2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00018261g0008.1 protein AED:0.26 eAED:0.31 QI:0|0|0|1|0|0.25|4|0|346; (*GB) gi|225423499|ref|XP_002274432.1| (e_value=1e-161) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=2e-132) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=2e-133) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc01g100790.1.1 (e_value=5e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00018261g0007.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|3|0|265; (*GB) gi|147798405|emb|CAN70142.1| (e_value=7e-99) hypothetical protein VITISV_032085 [Vitis vinifera];; (*SWP) sp|Q9LN01|PPR21_ARATH (e_value=1e-73) Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1;; (*TAIR) AT1G08070.1 (e_value=9e-75) | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2514374-2516599 REVERSE LENGTH=741;; (*ITAG) Solyc12g096510.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057467g0005.1 protein AED:0.10 eAED:0.10 QI:34|1|0.75|1|1|1|4|570|550; (*GB) gi|2654423|gb|AAB87727.1| (e_value=0.0) hydroxy-methylglutaryl-coenzyme A reductase [Nicotiana tabacum];; (*SWP) sp|P48020|HMDH1_SOLTU (e_value=0.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum GN=HMG1 PE=2 SV=1;; (*TAIR) AT1G76490.1 (e_value=0.0) | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642;; (*ITAG) Solyc02g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40528275-40531424 transcript_region:SL2.40ch02:40528275..40531424- go_terms:GO:0042282 functional_description:"Hydroxy-methylglutaryl-coenzyme A reductase (AHRD V1 **** O48624_TOBAC); contains Interpro domain(s) IPR004554 Hydroxymethylglutaryl-CoA reductase, class I, catalytic "; GO:0042282 NbS00024918g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|207; (*GB) gi|27544456|dbj|BAC54966.1| (e_value=6e-29) pectinmethylesterase inhibitor [Actinidia deliciosa];; (*SWP) sp|P83326|PMEI_ACTDE (e_value=3e-29) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*TAIR) AT3G17220.1 (e_value=1e-15) | Symbols: ATPMEI2, PMEI2 | pectin methylesterase inhibitor 2 | chr3:5883328-5883849 REVERSE LENGTH=173;; (*ITAG) Solyc09g072950.1.1 (e_value=6e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61125499-61125981 transcript_region:SL2.40ch09:61125499..61125981- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q2X5_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00014951g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|128; (*ITAG) Solyc04g053070.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00014951g0006.1 protein AED:0.41 eAED:0.41 QI:331|0.33|0.5|1|0.33|0.5|4|5|125 NbS00009979g0008.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.75|0.33|0.25|4|0|211; (*GB) gi|147768753|emb|CAN71534.1| (e_value=6e-58) hypothetical protein VITISV_018182 [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=3e-40) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=2e-41) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g112320.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00009979g0006.1 protein AED:0.10 eAED:0.27 QI:0|0|0|1|0|0|4|0|208; (*GB) gi|297744184|emb|CBI37154.3| (e_value=4e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g051880.1.1 (e_value=5e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50325737-50331365 transcript_region:SL2.40ch04:50325737..50331365- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *--- D7KVZ3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00009979g0007.1 protein AED:0.42 eAED:0.45 QI:15|0|0|1|0|0|2|0|88; (*GB) gi|147768753|emb|CAN71534.1| (e_value=5e-17) hypothetical protein VITISV_018182 [Vitis vinifera];; (*TAIR) AT4G38180.1 (e_value=1e-14) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g112320.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00000217g0010.1 protein AED:0.44 eAED:0.44 QI:0|0.66|0.42|1|1|1|7|0|246; (*GB) gi|356505566|ref|XP_003521561.1| (e_value=2e-42) PREDICTED: thiamin pyrophosphokinase 1-like [Glycine max];; (*TAIR) AT2G44750.2 (e_value=2e-40) | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451510-18452754 FORWARD LENGTH=267;; (*ITAG) Solyc09g074970.2.1 (e_value=2e-52) genomic_reference:SL2.40ch09 gene_region:62268508-62273326 transcript_region:SL2.40ch09:62268508..62273326+ go_terms:GO:0004788 functional_description:"Thiamin pyrophosphokinase 1 (AHRD V1 **** B6SUI9_MAIZE); contains Interpro domain(s) IPR016966 Thiamin pyrophosphokinase, eukaryotic "; GO:0004788 NbS00000217g0012.1 protein AED:0.45 eAED:0.45 QI:0|0|0|1|1|1|2|0|102; (*GB) gi|224131150|ref|XP_002321013.1| (e_value=1e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54QA0|PMS1_DICDI (e_value=1e-21) Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1;; (*TAIR) AT4G02460.1 (e_value=2e-39) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00000217g0018.1 protein AED:0.65 eAED:0.82 QI:0|0|0.2|0.8|0.25|0.4|5|0|272; (*GB) gi|297848502|ref|XP_002892132.1| (e_value=1e-16) hypothetical protein ARALYDRAFT_470256 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G44750.2 (e_value=1e-17) | Symbols: TPK2 | thiamin pyrophosphokinase 2 | chr2:18451510-18452754 FORWARD LENGTH=267;; (*ITAG) Solyc09g074970.2.1 (e_value=9e-21) genomic_reference:SL2.40ch09 gene_region:62268508-62273326 transcript_region:SL2.40ch09:62268508..62273326+ go_terms:GO:0004788 functional_description:"Thiamin pyrophosphokinase 1 (AHRD V1 **** B6SUI9_MAIZE); contains Interpro domain(s) IPR016966 Thiamin pyrophosphokinase, eukaryotic "; GO:0004788 NbS00000217g0003.1 protein AED:0.80 eAED:0.83 QI:0|0|0|0.42|1|1|7|0|244; (*GB) gi|255564114|ref|XP_002523054.1| (e_value=2e-114) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9P3U2|YKX4_SCHPO (e_value=3e-38) Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.04 PE=2 SV=1;; (*TAIR) AT4G02480.1 (e_value=2e-109) | Symbols: | AAA-type ATPase family protein | chr4:1082082-1088680 REVERSE LENGTH=1265;; (*ITAG) Solyc09g074950.2.1 (e_value=4e-119) genomic_reference:SL2.40ch09 gene_region:62243552-62258359 transcript_region:SL2.40ch09:62243552..62258359+ go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00000217g0017.1 protein AED:0.35 eAED:0.36 QI:0|0|0|1|0|0|2|0|295; (*GB) gi|225437328|ref|XP_002267393.1| (e_value=2e-64) PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera];; (*SWP) sp|P54278|PMS2_HUMAN (e_value=5e-15) Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2;; (*TAIR) AT4G02460.1 (e_value=2e-51) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=5e-152) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00020657g0018.1 protein AED:0.17 eAED:0.17 QI:0|0.63|0.55|1|0.84|0.85|20|0|884; (*GB) gi|255566397|ref|XP_002524184.1| (e_value=0.0) aconitase, putative [Ricinus communis];; (*SWP) sp|Q9SIB9|ACO2M_ARATH (e_value=0.0) Aconitate hydratase 2, mitochondrial OS=Arabidopsis thaliana GN=ACO2 PE=1 SV=2;; (*TAIR) AT2G05710.1 (e_value=0.0) | Symbols: ACO3 | aconitase 3 | chr2:2141591-2146350 FORWARD LENGTH=990;; (*ITAG) Solyc07g052350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbS00020657g0017.1 protein AED:0.38 eAED:0.45 QI:0|1|0.57|1|0.83|1|7|0|160; (*GB) gi|297803402|ref|XP_002869585.1| (e_value=5e-56) NADH:ubiquinone oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G26965.1 (e_value=8e-58) | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr4:13539717-13542041 FORWARD LENGTH=184;; (*ITAG) Solyc07g064640.2.1 (e_value=9e-71) genomic_reference:SL2.40ch07 gene_region:63923239-63927583 transcript_region:SL2.40ch07:63923239..63927583- go_terms:GO:0016020 functional_description:"NADH ubiquinone oxidoreductase family protein (AHRD V1 **-- D7MEK6_ARALY); contains Interpro domain(s) IPR007763 NADH:ubiquinone oxidoreductase, 17.2 kD subunit "; GO:0016020 NbS00020657g0021.1 protein AED:0.29 eAED:0.29 QI:196|0.8|0.83|1|0.4|0.66|6|472|334; (*GB) gi|225460963|ref|XP_002279971.1| (e_value=2e-131) PREDICTED: uncharacterized protein LOC100248711 [Vitis vinifera];; (*TAIR) AT4G26980.1 (e_value=4e-109) | Symbols: | RNI-like superfamily protein | chr4:13548813-13550644 REVERSE LENGTH=343;; (*ITAG) Solyc07g064630.2.1 (e_value=3e-137) genomic_reference:SL2.40ch07 gene_region:63918272-63921399 transcript_region:SL2.40ch07:63918272..63921399+ functional_description:"Os06g0679700 protein (Fragment) (AHRD V1 *-*- Q0DA39_ORYSJ); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00020657g0020.1 protein AED:0.27 eAED:0.28 QI:0|0|0|1|0|0|2|0|134; (*GB) gi|108802688|ref|YP_636345.1| (e_value=7e-19) hypothetical protein EuglglCp070 [Eucalyptus globulus subsp. globulus];; (*SWP) sp|Q49KT9|YCF68_EUCGG (e_value=2e-20) Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1;; (*ITAG) ATCG00180.1 (e_value=6e-15) | Symbols: RPOC1 | DNA-directed RNA polymerase family protein | chrC:20251-23084 REVERSE LENGTH=680;; (*ITAG) Solyc01g007720.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:1898832-1899766 transcript_region:SL2.40ch01:1898832..1899766+ functional_description:"ORF42f (AHRD V1 *-*- Q32989_PINTH)"; NbS00020657g0019.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|59; (*GB) gi|81301622|ref|YP_398917.1| (e_value=5e-20) hypothetical protein NitoCp121 [Nicotiana tomentosiformis];; (*ITAG) Solyc09g050120.1.1 (e_value=1e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:32310684-32310899 transcript_region:SL2.40ch09:32310684..32310899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048849g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.92|1|1|0.92|13|350|714; (*GB) gi|297739742|emb|CBI29924.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8K0V4|CNOT3_MOUSE (e_value=3e-44) CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1;; (*TAIR) AT5G18230.1 (e_value=0.0) | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=843;; (*ITAG) Solyc12g019860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:11996511-12027840 transcript_region:SL2.40ch12:11996511..12027840+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 3 (AHRD V1 *-*- Q7ZVL4_DANRE); contains Interpro domain(s) IPR012270 CCR4-NOT complex, subunit 3/ 5 "; GO:0005634 NbS00048849g0003.1 protein AED:0.77 eAED:0.77 QI:74|0|0|0.25|1|1|4|0|118; (*GB) gi|356559538|ref|XP_003548056.1| (e_value=3e-33) PREDICTED: uncharacterized protein LOC100819202 [Glycine max];; (*SWP) sp|O75175|CNOT3_HUMAN (e_value=7e-16) CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1;; (*TAIR) AT5G18230.2 (e_value=1e-33) | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=845;; (*ITAG) Solyc12g019860.1.1 (e_value=2e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:11996511-12027840 transcript_region:SL2.40ch12:11996511..12027840+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 3 (AHRD V1 *-*- Q7ZVL4_DANRE); contains Interpro domain(s) IPR012270 CCR4-NOT complex, subunit 3/ 5 "; GO:0005634 NbS00022426g0005.1 protein AED:0.15 eAED:0.15 QI:144|1|1|1|0.83|0.71|7|600|675; (*GB) gi|225432348|ref|XP_002276482.1| (e_value=0.0) PREDICTED: GTPase obg-like [Vitis vinifera];; (*SWP) sp|Q67SC6|OBG_SYMTH (e_value=5e-95) GTPase obg OS=Symbiobacterium thermophilum GN=obg PE=3 SV=1;; (*TAIR) AT5G18570.1 (e_value=0.0) | Symbols: EMB269, ATOBGC, CPSAR1 | GTP1/OBG family protein | chr5:6171839-6174823 REVERSE LENGTH=681;; (*ITAG) Solyc01g067530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68662411-68673307 transcript_region:SL2.40ch01:68662411..68673307+ go_terms:GO:0005525,GO:0000166,GO:0005622 functional_description:"GTPase obg (AHRD V1 ***- D5XBC9_THEPJ); contains Interpro domain(s) IPR014100 GTP-binding protein Obg/CgtA "; GO:0005525,GO:0000166,GO:0005622 NbS00049768g0006.1 protein AED:0.00 eAED:0.00 QI:296|1|1|1|0|0.5|2|112|108; (*GB) gi|224110040|ref|XP_002315394.1| (e_value=6e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT1G73120.1 (e_value=1e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; EXPRESSED IN: root, cultured cell; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27497365-27497885 REVERSE LENGTH=109;; (*ITAG) Solyc06g068660.2.1 (e_value=1e-50) genomic_reference:SL2.40ch06 gene_region:38954768-38956708 transcript_region:SL2.40ch06:38954768..38956708- functional_description:"Unknown Protein (AHRD V1)"; NbS00049768g0003.1 protein AED:0.40 eAED:0.71 QI:5|0|0|1|1|0.66|3|0|117 NbS00049768g0009.1 protein AED:0.44 eAED:0.66 QI:0|0|0|1|0|0|2|0|68 NbS00029124g0005.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|0.33|0.5|4|0|118; (*GB) gi|224121404|ref|XP_002330819.1| (e_value=5e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LKJ1|HIBC1_ARATH (e_value=5e-24) 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1;; (*TAIR) AT5G65940.1 (e_value=4e-25) | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | chr5:26376830-26379161 REVERSE LENGTH=378;; (*ITAG) Solyc05g032680.2.1 (e_value=2e-63) genomic_reference:SL2.40ch05 gene_region:43421776-43423564 transcript_region:SL2.40ch05:43421776..43423564- functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR)"; NbS00038497g0002.1 protein AED:0.46 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|113 NbS00055939g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|224146144|ref|XP_002325896.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFD2|RGP5_ARATH (e_value=3e-173) Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1;; (*TAIR) AT5G16510.2 (e_value=2e-174) | Symbols: | Alpha-1,4-glucan-protein synthase family protein | chr5:5393296-5394342 FORWARD LENGTH=348;; (*ITAG) Solyc04g051200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49214648-49215694 transcript_region:SL2.40ch04:49214648..49215694- go_terms:GO:0030054 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-- B9RFU2_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0030054 NbS00055939g0002.1 protein AED:0.74 eAED:0.74 QI:0|0.5|0.33|0.66|1|1|3|43|88; (*GB) gi|224146148|ref|XP_002325897.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT4G30390.1 (e_value=2e-27) | Symbols: | unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:14862224-14862906 REVERSE LENGTH=95; NbS00031471g0003.1 protein AED:0.25 eAED:0.25 QI:191|0.66|0.57|1|0.83|0.71|7|501|363; (*GB) gi|225454302|ref|XP_002276965.1| (e_value=0.0) PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase [Vitis vinifera];; (*SWP) sp|B0TC10|PANB_HELMI (e_value=2e-74) 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=panB PE=3 SV=1;; (*TAIR) AT3G61530.2 (e_value=0.0) | Symbols: PANB2 | Phosphoenolpyruvate carboxylase family protein | chr3:22771692-22773313 REVERSE LENGTH=354;; (*ITAG) Solyc09g007130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:764170-767914 transcript_region:SL2.40ch09:764170..767914- go_terms:GO:0003864 functional_description:"3-methyl-2-oxobutanoate hydroxymethyltransferase (AHRD V1 **** B6TL59_MAIZE); contains Interpro domain(s) IPR003700 Ketopantoate hydroxymethyltransferase "; GO:0003864 NbS00040489g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.69|0.64|0.92|0.76|0.71|14|0|975; (*GB) gi|359474753|ref|XP_002269504.2| (e_value=0.0) PREDICTED: AP-4 complex subunit epsilon-like [Vitis vinifera];; (*SWP) sp|Q8L7A9|AP4E_ARATH (e_value=0.0) AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1;; (*TAIR) AT1G31730.1 (e_value=0.0) | Symbols: | Adaptin family protein | chr1:11359907-11363916 FORWARD LENGTH=938;; (*ITAG) Solyc08g075310.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56569786-56585758 transcript_region:SL2.40ch08:56569786..56585758+ go_terms:GO:0030117,GO:0005488 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 *-*- B2VRJ9_PYRTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030117,GO:0005488 NbS00045280g0004.1 protein AED:0.19 eAED:0.19 QI:17|0.92|0.78|1|1|1|14|0|884; (*GB) gi|296278602|gb|ADH04265.1| (e_value=0.0) ARF1 [Nicotiana benthamiana];; (*SWP) sp|Q6H6V4|ARFF_ORYSJ (e_value=0.0) Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1;; (*TAIR) AT1G30330.2 (e_value=0.0) | Symbols: ARF6 | auxin response factor 6 | chr1:10686125-10690036 REVERSE LENGTH=935;; (*ITAG) Solyc07g043620.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54884781-54890195 transcript_region:SL2.40ch07:54884781..54890195- go_terms:GO:0003700 functional_description:"Auxin response factor 6-1 (AHRD V1 **** D9IUY5_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700 NbC24719446g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|255584650|ref|XP_002533048.1| (e_value=9e-98) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|F4IAE9|Y1591_ARATH (e_value=4e-98) ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1;; (*TAIR) AT1G05910.1 (e_value=3e-99) | Symbols: | cell division cycle protein 48-related / CDC48-related | chr1:1790796-1796503 FORWARD LENGTH=1210;; (*ITAG) Solyc04g076180.2.1 (e_value=9e-101) genomic_reference:SL2.40ch04 gene_region:58710783-58718831 transcript_region:SL2.40ch04:58710783..58718831+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00044844g0004.1 protein AED:0.01 eAED:0.01 QI:294|0.75|0.8|1|0.5|0.4|5|313|181; (*GB) gi|224095604|ref|XP_002310417.1| (e_value=9e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54Q31|PHB2_DICDI (e_value=6e-48) Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1;; (*TAIR) AT4G28510.1 (e_value=1e-68) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=6e-80) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00011545g0020.1 protein AED:0.14 eAED:0.18 QI:0|0.25|0|1|0.25|0.2|5|0|288; (*GB) gi|255550010|ref|XP_002516056.1| (e_value=9e-84) Peroxidase 57 precursor, putative [Ricinus communis];; (*SWP) sp|O81755|PER48_ARATH (e_value=4e-66) Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3;; (*TAIR) AT4G33870.1 (e_value=5e-64) | Symbols: | Peroxidase superfamily protein | chr4:16234670-16236492 REVERSE LENGTH=401;; (*ITAG) Solyc03g120800.2.1 (e_value=1e-143) genomic_reference:SL2.40ch03 gene_region:63117512-63119653 transcript_region:SL2.40ch03:63117512..63119653- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q43004_ORYSJ); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00011545g0021.1 protein AED:0.20 eAED:0.20 QI:83|0.66|0.75|0.75|1|1|4|0|98; (*GB) gi|217070940|gb|ACJ83830.1| (e_value=8e-52) unknown [Medicago truncatula];; (*SWP) sp|Q8LEM8|RL373_ARATH (e_value=7e-51) 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1;; (*TAIR) AT3G16080.1 (e_value=5e-52) | Symbols: | Zinc-binding ribosomal protein family protein | chr3:5454892-5455677 FORWARD LENGTH=95;; (*ITAG) Solyc08g068180.2.1 (e_value=2e-53) genomic_reference:SL2.40ch08 gene_region:54505411-54508853 transcript_region:SL2.40ch08:54505411..54508853+ go_terms:GO:0005840 functional_description:"Ribosomal protein L37 (AHRD V1 ***- B9RS60_RICCO); contains Interpro domain(s) IPR001569 Ribosomal protein L37e "; GO:0005840 NbS00011545g0023.1 protein AED:0.26 eAED:0.26 QI:391|1|1|1|0.66|0.71|7|300|181; (*GB) gi|116672840|gb|ABK15561.1| (e_value=3e-131) small GTPase Rab2 [Capsicum annuum];; (*SWP) sp|O24461|RAB7_PRUAR (e_value=6e-126) Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT1G52280.1 (e_value=8e-125) | Symbols: AtRABG3d, RABG3d | RAB GTPase homolog G3D | chr1:19468150-19469449 REVERSE LENGTH=206;; (*ITAG) Solyc03g120750.2.1 (e_value=5e-135) genomic_reference:SL2.40ch03 gene_region:63080116-63084324 transcript_region:SL2.40ch03:63080116..63084324- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00011545g0022.1 protein AED:0.32 eAED:0.32 QI:292|0.85|0.75|1|0.71|0.87|8|0|581; (*GB) gi|255546475|ref|XP_002514297.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C821|PEK15_ARATH (e_value=0.0) Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=1 SV=1;; (*TAIR) AT1G52290.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:19470251-19472362 REVERSE LENGTH=509;; (*ITAG) Solyc03g120760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63085379-63091939 transcript_region:SL2.40ch03:63085379..63091939- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00011545g0024.1 protein AED:0.16 eAED:0.16 QI:85|0.6|0.56|1|0.66|0.68|16|398|1049; (*GB) gi|297743269|emb|CBI36136.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15240.2 (e_value=0.0) | Symbols: | Phox-associated domain;Phox-like;Sorting nexin, C-terminal | chr1:5243799-5248604 FORWARD LENGTH=1020;; (*ITAG) Solyc03g120770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63101318-63111389 transcript_region:SL2.40ch03:63101318..63111389+ go_terms:GO:0007154 functional_description:"At1g15240-like protein (Fragment) (AHRD V1 *-*- C0JCI9_9BRAS); contains Interpro domain(s) IPR001683 Phox-like "; GO:0007154 NbS00011545g0005.1 protein AED:0.16 eAED:0.17 QI:549|0|0.5|1|0|0.5|2|0|223; (*GB) gi|255550008|ref|XP_002516055.1| (e_value=1e-34) hypothetical protein RCOM_1494490 [Ricinus communis];; (*TAIR) AT1G15260.1 (e_value=3e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5249834-5250370 FORWARD LENGTH=178;; (*ITAG) Solyc03g120790.1.1 (e_value=2e-110) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63116563-63117252 transcript_region:SL2.40ch03:63116563..63117252+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011545g0019.1 protein AED:0.17 eAED:0.36 QI:0|1|0.5|1|1|1|2|340|79 NbS00046965g0003.1 protein AED:0.15 eAED:0.15 QI:135|0.72|0.66|0.75|0.63|0.58|12|0|375; (*GB) gi|359495648|ref|XP_002265379.2| (e_value=4e-111) PREDICTED: chromosome transmission fidelity protein 18 homolog [Vitis vinifera];; (*SWP) sp|Q6NU40|CTF18_XENLA (e_value=2e-12) Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis GN=chtf18 PE=2 SV=1;; (*TAIR) AT1G04730.1 (e_value=7e-101) | Symbols: CTF18 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1325385-1331086 REVERSE LENGTH=943;; (*ITAG) Solyc09g091650.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66227327-66243063 transcript_region:SL2.40ch09:66227327..66243063+ go_terms:GO:0003677 functional_description:"Replication factor C large subunit (AHRD V1 *-*- B8D4I5_DESK1); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0003677 NbS00047670g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|80 NbS00047670g0006.1 protein AED:0.33 eAED:0.40 QI:0|0.5|0.54|0.90|0.4|0.36|11|0|534; (*GB) gi|225442853|ref|XP_002285369.1| (e_value=7e-154) PREDICTED: uncharacterized protein LOC100253140 [Vitis vinifera];; (*SWP) sp|B5X8M4|BRCC3_SALSA (e_value=2e-39) Lys-63-specific deubiquitinase BRCC36 OS=Salmo salar GN=brcc3 PE=2 SV=1;; (*TAIR) AT3G06820.2 (e_value=6e-115) | Symbols: BRCC36B, AtBRCC36B | Mov34/MPN/PAD-1 family protein | chr3:2151027-2153264 REVERSE LENGTH=405;; (*ITAG) Solyc06g067990.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38527501-38536182 transcript_region:SL2.40ch06:38527501..38536182- go_terms:GO:0031593 functional_description:"Lys-63-specific deubiquitinase BRCC36 (AHRD V1 *--- BRCC3_XENLA); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0031593 NbS00009759g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0.5|0.66|3|0|288; (*GB) gi|4426627|gb|AAD20458.1| (e_value=0.0) sterol-C5(6)-desaturase homolog [Nicotiana tabacum];; (*SWP) sp|Q9ZT29|SC5D_TOBAC (e_value=3e-180) Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G02580.1 (e_value=1e-154) | Symbols: STE1, DWF7, BUL1 | sterol 1 | chr3:547048-548615 FORWARD LENGTH=281;; (*ITAG) Solyc02g063240.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29878782-29881548 transcript_region:SL2.40ch02:29878782..29881548+ go_terms:GO:0000248 functional_description:"Sterol C-5 desaturase (AHRD V1 **** D7FW86_ECTSI); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0000248 NbS00009759g0004.1 protein AED:0.24 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|199; (*GB) gi|224077184|ref|XP_002305168.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g063230.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29870430-29871206 transcript_region:SL2.40ch02:29870430..29871206+ functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00001649g0007.1 protein AED:0.01 eAED:0.02 QI:721|0|0.5|1|0|0.5|2|371|338; (*GB) gi|255550119|ref|XP_002516110.1| (e_value=2e-167) protein with unknown function [Ricinus communis];; (*SWP) sp|Q96H78|S2544_HUMAN (e_value=2e-33) Solute carrier family 25 member 44 OS=Homo sapiens GN=SLC25A44 PE=2 SV=1;; (*TAIR) AT1G72820.1 (e_value=7e-154) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27403457-27404506 FORWARD LENGTH=349;; (*ITAG) Solyc12g096030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63449427-63450461 transcript_region:SL2.40ch12:63449427..63450461+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q8L9F8_ARATH); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00001649g0015.1 protein AED:0.16 eAED:0.17 QI:0|0|0|1|1|1|2|0|341; (*GB) gi|343887311|dbj|BAK61857.1| (e_value=7e-93) ankyrin repeat family protein [Citrus unshiu];; (*SWP) sp|Q6AWW5|Y5262_ARATH (e_value=6e-16) Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1;; (*TAIR) AT4G10720.1 (e_value=1e-29) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=445;; (*ITAG) Solyc08g062360.2.1 (e_value=8e-157) genomic_reference:SL2.40ch08 gene_region:48169401-48171051 transcript_region:SL2.40ch08:48169401..48171051+ go_terms:GO:0015276 functional_description:"Ankyrin repeat protein (AHRD V1 **-- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0015276 NbS00001649g0023.1 protein AED:0.11 eAED:0.20 QI:0|0|0|1|0|0.33|3|0|353; (*GB) gi|255550113|ref|XP_002516107.1| (e_value=2e-48) heat-shock protein, putative [Ricinus communis];; (*SWP) sp|Q01545|HSP22_IPONI (e_value=2e-46) 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=1e-41) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=4e-41) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00001649g0018.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|159; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=2e-79) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=1e-74) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=2e-48) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=5e-82) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00001649g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|350534974|ref|NP_001233913.1| (e_value=1e-81) class II small heat shock protein Le-HSP17.6 [Solanum lycopersicum];; (*SWP) sp|O82013|HSP21_SOLPE (e_value=6e-77) 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT5G12020.1 (e_value=4e-50) | Symbols: HSP17.6II | 17.6 kDa class II heat shock protein | chr5:3882409-3882876 REVERSE LENGTH=155;; (*ITAG) Solyc08g062450.1.1 (e_value=2e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:48318166-48318642 transcript_region:SL2.40ch08:48318166..48318642- go_terms:GO:0051082 functional_description:"class II heat shock protein (AHRD V1 ***- B6T339_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00001649g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|57013940|ref|YP_173413.1| (e_value=2e-39) hypothetical protein NitaMp069 [Nicotiana tabacum]; NbS00022401g0002.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|187; (*GB) gi|225423987|ref|XP_002282662.1| (e_value=9e-20) PREDICTED: uncharacterized protein LOC100266248 [Vitis vinifera];; (*TAIR) AT1G68490.1 (e_value=1e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25693926-25694946 FORWARD LENGTH=183;; (*ITAG) Solyc04g007220.2.1 (e_value=3e-30) genomic_reference:SL2.40ch04 gene_region:913039-915859 transcript_region:SL2.40ch04:913039..915859- functional_description:"Unknown Protein (AHRD V1)"; NbS00040736g0006.1 protein AED:0.22 eAED:0.29 QI:0|0|0|1|0|0|5|0|561; (*GB) gi|225438015|ref|XP_002270968.1| (e_value=1e-144) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=3e-74) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT5G25910.1 (e_value=5e-77) | Symbols: AtRLP52, RLP52 | receptor like protein 52 | chr5:9038860-9041377 FORWARD LENGTH=811;; (*ITAG) Solyc09g072810.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61007613-61011641 transcript_region:SL2.40ch09:61007613..61011641+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00040736g0005.1 protein AED:0.39 eAED:0.44 QI:0|0|0|1|0|0|2|0|225; (*GB) gi|60327204|gb|AAX19025.1| (e_value=1e-102) Hcr2-p3 [Solanum pimpinellifolium];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=4e-25) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G05660.1 (e_value=2e-39) | Symbols: AtRLP33, RLP33 | receptor like protein 33 | chr3:1649258-1652001 REVERSE LENGTH=875;; (*ITAG) Solyc06g008300.2.1 (e_value=3e-104) genomic_reference:SL2.40ch06 gene_region:2161344-2164746 transcript_region:SL2.40ch06:2161344..2164746- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00040736g0007.1 protein AED:0.43 eAED:1.00 QI:70|0|0|1|0|0|2|284|26 NbS00041021g0004.1 protein AED:0.28 eAED:0.28 QI:386|0.85|0.8|1|0.92|0.8|15|0|377; (*GB) gi|357446399|ref|XP_003593477.1| (e_value=2e-165) Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula];; (*TAIR) AT1G11170.1 (e_value=9e-153) | Symbols: | Protein of unknown function (DUF707) | chr1:3741724-3744459 FORWARD LENGTH=438;; (*ITAG) Solyc02g078820.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38056053-38061203 transcript_region:SL2.40ch02:38056053..38061203+ functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- Q8H767_ARATH); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00000558g0020.1 protein AED:0.02 eAED:0.02 QI:100|1|1|1|1|1|3|126|211; (*GB) gi|391738040|sp|P0DI50.1|CASP_TOBAC (e_value=3e-77) RecName: Full=Casparian strip membrane protein 1;; (*SWP) sp|P0DI50|CASP_TOBAC (e_value=1e-78) Casparian strip membrane protein 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G36100.1 (e_value=2e-63) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206;; (*ITAG) Solyc09g010200.2.1 (e_value=7e-96) genomic_reference:SL2.40ch09 gene_region:3587567-3589661 transcript_region:SL2.40ch09:3587567..3589661- functional_description:"UPF0497 membrane protein 7 (AHRD V1 ***- U4977_RICCO); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00000558g0019.1 protein AED:0.04 eAED:0.04 QI:250|1|1|1|1|1|11|556|399; (*GB) gi|297740154|emb|CBI30336.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G22350.1 (e_value=5e-164) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=5e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00000558g0022.1 protein AED:0.28 eAED:0.29 QI:0|0.73|0.7|0.85|0.63|0.7|20|0|879; (*GB) gi|359482024|ref|XP_002276024.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257992 [Vitis vinifera];; (*TAIR) AT3G11560.4 (e_value=0.0) | Symbols: | LETM1-like protein | chr3:3639553-3645506 FORWARD LENGTH=872;; (*ITAG) Solyc09g010280.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3647431-3666876 transcript_region:SL2.40ch09:3647431..3666876- functional_description:"Os08g0482100 protein (Fragment) (AHRD V1 **-- Q0J4Y4_ORYSJ); contains Interpro domain(s) IPR011685 LETM1-like "; NbS00000558g0021.1 protein AED:0.34 eAED:0.43 QI:129|0.57|0.37|1|0.42|0.5|8|0|324; (*GB) gi|357453179|ref|XP_003596866.1| (e_value=2e-99) mRNA-decapping enzyme-like protein [Medicago truncatula];; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=2e-64) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2;; (*TAIR) AT1G08370.1 (e_value=2e-65) | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367;; (*ITAG) Solyc09g010300.2.1 (e_value=4e-129) genomic_reference:SL2.40ch09 gene_region:3673362-3681783 transcript_region:SL2.40ch09:3673362..3681783- go_terms:GO:0050072,GO:0042803 functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; GO:0050072,GO:0042803 NbS00000558g0032.1 protein AED:0.28 eAED:0.34 QI:0|0.25|0|0.6|0.75|0.4|5|0|363; (*GB) gi|356537122|ref|XP_003537079.1| (e_value=3e-146) PREDICTED: uncharacterized protein LOC100794408 [Glycine max];; (*TAIR) AT3G11570.1 (e_value=9e-136) | Symbols: TBL8 | TRICHOME BIREFRINGENCE-LIKE 8 | chr3:3645540-3647328 REVERSE LENGTH=427;; (*ITAG) Solyc09g065030.2.1 (e_value=7e-95) genomic_reference:SL2.40ch09 gene_region:58435017-58439298 transcript_region:SL2.40ch09:58435017..58439298+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00000558g0031.1 protein AED:0.53 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|95 NbS00000558g0013.1 protein AED:0.55 eAED:0.96 QI:0|0|0|0.57|1|1|7|0|573; (*GB) gi|359495426|ref|XP_002270830.2| (e_value=2e-135) PREDICTED: uncharacterized protein LOC100251856 [Vitis vinifera];; (*SWP) sp|P0A3U1|LTRA_LACLM (e_value=3e-19) Group II intron-encoded protein ltrA OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=ltrA PE=1 SV=1;; (*TAIR) AT1G74350.1 (e_value=1e-123) | Symbols: | Intron maturase, type II family protein | chr1:27949022-27951283 REVERSE LENGTH=753;; (*ITAG) Solyc03g033520.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:9344333-9346934 transcript_region:SL2.40ch03:9344333..9346934+ functional_description:"Maturase (Fragment) (AHRD V1 *-*- O79414_SOLTU); contains Interpro domain(s) IPR000442 Intron maturase, type II "; NbS00005797g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.71|1|1|0.71|7|0|249; (*GB) gi|255565697|ref|XP_002523838.1| (e_value=8e-146) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZE28|Y120_RICPR (e_value=3e-18) Uncharacterized protein RP120 OS=Rickettsia prowazekii (strain Madrid E) GN=RP120 PE=4 SV=1;; (*TAIR) AT5G22350.1 (e_value=4e-136) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=4e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00005797g0009.1 protein AED:0.34 eAED:0.34 QI:217|1|0.5|1|1|0.5|2|0|140; (*GB) gi|225464890|ref|XP_002273670.1| (e_value=5e-55) PREDICTED: uncharacterized protein RP120 [Vitis vinifera];; (*TAIR) AT5G22350.1 (e_value=7e-52) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=1e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00005797g0012.1 protein AED:0.32 eAED:0.67 QI:48|0|0|1|0|0|2|0|103; (*GB) gi|196052140|gb|ACG69157.1| (e_value=4e-17) NADH dehydrogenase subunit [Schultesianthus megalandrus];; (*SWP) sp|Q8S8V0|NU5C_ATRBE (e_value=9e-18) NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Atropa belladonna GN=ndhF PE=3 SV=1;; (*ITAG) Solyc01g017090.2.1 (e_value=8e-17) genomic_reference:SL2.40ch01 gene_region:23876221-23876888 transcript_region:SL2.40ch01:23876221..23876888+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit L (AHRD V1 *-*- NUOL_NEIMA); contains Interpro domain(s) IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup "; GO:0055114 NbS00005173g0006.1 protein AED:0.06 eAED:0.06 QI:105|0.8|0.5|1|0.2|0.5|6|388|867; (*GB) gi|224138268|ref|XP_002326560.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZR08|Y4230_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=2 SV=3;; (*TAIR) AT1G61610.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr1:22733472-22736509 FORWARD LENGTH=842;; (*ITAG) Solyc05g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2684709-2689587 transcript_region:SL2.40ch05:2684709..2689587- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00004536g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|336; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=5e-89) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q8GVE3|FLRT_CITMA (e_value=7e-67) Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=2;; (*TAIR) AT1G07250.1 (e_value=2e-37) | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4 | chr1:2225963-2227402 FORWARD LENGTH=479;; (*ITAG) Solyc01g067350.2.1 (e_value=2e-89) genomic_reference:SL2.40ch01 gene_region:68202503-68203913 transcript_region:SL2.40ch01:68202503..68203913- go_terms:GO:0016757 functional_description:"UDP-glucosyltransferase (AHRD V1 **-- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0016757 NbS00004536g0016.1 protein AED:0.18 eAED:0.18 QI:0|0.72|0.58|1|0.90|0.83|12|0|847; (*GB) gi|225432963|ref|XP_002284428.1| (e_value=0.0) PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera];; (*SWP) sp|Q8RY18|Y5436_ARATH (e_value=1e-129) MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1;; (*TAIR) AT1G04300.1 (e_value=2e-147) | Symbols: | TRAF-like superfamily protein | chr1:1148818-1153895 REVERSE LENGTH=1074;; (*ITAG) Solyc03g005430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:303777-317879 transcript_region:SL2.40ch03:303777..317879- functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00004536g0014.1 protein AED:0.47 eAED:0.59 QI:0|0|0|1|1|1|2|0|83; (*GB) gi|356574744|ref|XP_003555505.1| (e_value=5e-19) PREDICTED: MATH domain-containing protein At5g43560-like [Glycine max];; (*ITAG) Solyc09g089560.2.1 (e_value=4e-27) genomic_reference:SL2.40ch09 gene_region:64606131-64617794 transcript_region:SL2.40ch09:64606131..64617794- functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *--- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00004562g0013.1 protein AED:0.00 eAED:0.00 QI:97|1|1|1|0|1|2|136|106 NbS00004562g0019.1 protein AED:0.17 eAED:0.17 QI:70|0.81|0.75|1|0.63|0.58|12|719|492; (*GB) gi|297739882|emb|CBI30064.3| (e_value=3e-177) unnamed protein product [Vitis vinifera];; (*SWP) sp|P45951|ARP_ARATH (e_value=4e-163) Apurinic endonuclease-redox protein OS=Arabidopsis thaliana GN=ARP PE=2 SV=2;; (*TAIR) AT2G41460.1 (e_value=3e-164) | Symbols: ARP | apurinic endonuclease-redox protein | chr2:17285731-17288769 FORWARD LENGTH=536;; (*ITAG) Solyc04g016530.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7356030-7363750 transcript_region:SL2.40ch04:7356030..7363750- go_terms:GO:0003676,GO:0006281,GO:0005622 functional_description:"Exodeoxyribonuclease III (AHRD V1 *-*- B8DDX5_LISMH); contains Interpro domain(s) IPR000097 AP endonuclease, family 1 "; GO:0003676,GO:0006281,GO:0005622 NbS00004562g0011.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|5|178|464; (*GB) gi|356498596|ref|XP_003518136.1| (e_value=0.0) PREDICTED: glycerol-3-phosphate dehydrogenase 1 [NAD(P)+]-like [Glycine max];; (*SWP) sp|Q97ID6|GPDA_CLOAB (e_value=2e-14) Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gpsA PE=3 SV=1;; (*TAIR) AT2G41540.3 (e_value=0.0) | Symbols: GPDHC1 | 6-phosphogluconate dehydrogenase family protein | chr2:17326801-17328654 FORWARD LENGTH=462;; (*ITAG) Solyc04g016330.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7131359-7134790 transcript_region:SL2.40ch04:7131359..7134790- go_terms:GO:0004367,GO:0051287 functional_description:"Glycerol-3-phosphate dehydrogenase (AHRD V1 **** O22216_ARATH); contains Interpro domain(s) IPR006168 NAD-dependent glycerol-3-phosphate dehydrogenase "; GO:0004367,GO:0051287 NbS00004562g0017.1 protein AED:0.27 eAED:0.27 QI:152|0.72|0.66|1|0.81|0.66|12|0|481; (*GB) gi|297739883|emb|CBI30065.3| (e_value=4e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4J2K2|FPGS2_ARATH (e_value=9e-134) Folylpolyglutamate synthase OS=Arabidopsis thaliana GN=FPGS2 PE=1 SV=1;; (*TAIR) AT3G10160.1 (e_value=7e-135) | Symbols: ATDFC, DFC, FPGS2 | DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625;; (*ITAG) Solyc04g016550.2.1 (e_value=7e-124) genomic_reference:SL2.40ch04 gene_region:7371010-7380851 transcript_region:SL2.40ch04:7371010..7380851- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9IHV7_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00004562g0002.1 protein AED:0.30 eAED:0.38 QI:0|0|0|0.66|1|1|3|0|314; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-40) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00026877g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0|1|0.5|0.66|3|0|291; (*GB) gi|3023839|sp|P93398.1|GBB2_TOBAC (e_value=0.0) RecName: Full=Guanine nucleotide-binding protein subunit beta-2;; (*SWP) sp|P93398|GBB2_TOBAC (e_value=0.0) Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G34460.4 (e_value=1e-177) | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=372;; (*ITAG) Solyc01g109560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88230608-88236477 transcript_region:SL2.40ch01:88230608..88236477- go_terms:GO:0003924 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 ***- C1GED5_PARBD); contains Interpro domain(s) IPR016346 Guanine nucleotide-binding protein, beta subunit "; GO:0003924 NbS00002490g0006.1 protein AED:0.16 eAED:0.17 QI:0|0|0|0.66|1|1|3|0|488; (*GB) gi|77403667|dbj|BAE46412.1| (e_value=1e-115) Pre-mRNA splicing factor [Solanum tuberosum];; (*TAIR) AT4G31200.1 (e_value=2e-70) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650;; (*ITAG) Solyc10g083200.1.1 (e_value=4e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00029010g0003.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.33|1|1|3|0|167 NbS00020460g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|253 NbS00005954g0006.1 protein AED:0.71 eAED:0.71 QI:84|0.33|0|0.5|1|0.75|4|0|141 NbS00005954g0007.1 protein AED:0.02 eAED:0.02 QI:328|1|1|1|0|0|2|392|179; (*GB) gi|12003380|gb|AAG43547.1|AF211529_1 (e_value=1e-87) Avr9/Cf-9 rapidly elicited protein 31 [Nicotiana tabacum];; (*SWP) sp|Q09011|CAST_SOLTU (e_value=5e-74) Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G20780.1 (e_value=4e-53) | Symbols: CML42 | calmodulin like 42 | chr4:11133309-11133884 REVERSE LENGTH=191;; (*ITAG) Solyc10g074740.1.1 (e_value=4e-78) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57697520-57698119 transcript_region:SL2.40ch10:57697520..57698119+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q9ATP2_CENCI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00004408g0007.1 protein AED:0.18 eAED:0.18 QI:159|1|1|1|1|1|3|191|170; (*GB) gi|313586593|gb|ADR71307.1| (e_value=8e-104) hypothetical protein 29 [Hevea brasiliensis];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=4e-99) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT3G08890.2 (e_value=2e-105) | Symbols: | Protein of unknown function, DUF538 | chr3:2706701-2707775 FORWARD LENGTH=170;; (*ITAG) Solyc10g085300.1.1 (e_value=5e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63850620-63853872 transcript_region:SL2.40ch10:63850620..63853872- functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00004408g0003.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|1|1|4|0|290; (*GB) gi|242054875|ref|XP_002456583.1| (e_value=9e-79) hypothetical protein SORBIDRAFT_03g038830 [Sorghum bicolor];; (*SWP) sp|Q8RX71|BAG4_ARATH (e_value=5e-59) BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana GN=BAG4 PE=1 SV=1;; (*TAIR) AT3G51780.1 (e_value=4e-60) | Symbols: ATBAG4, BAG4 | BCL-2-associated athanogene 4 | chr3:19207029-19208178 REVERSE LENGTH=269;; (*ITAG) Solyc10g085290.1.1 (e_value=4e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63843260-63847951 transcript_region:SL2.40ch10:63843260..63847951+ go_terms:GO:0006915 functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B4FV61_MAIZE); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00011316g0121.1 protein AED:0.05 eAED:0.05 QI:318|0.78|0.6|1|0.78|0.86|15|433|595 NbS00011316g0119.1 protein AED:0.10 eAED:0.14 QI:0|1|0|1|1|1|2|0|207 NbS00011316g0117.1 protein AED:0.28 eAED:0.28 QI:207|1|1|1|0.33|0.5|4|517|106 NbS00011316g0118.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0.28|0.85|0.66|0.57|7|232|178 NbS00019265g0001.1 protein AED:0.29 eAED:0.34 QI:99|0.6|0.66|1|1|1|6|0|422; (*GB) gi|115765|sp|P10708.1|CB12_SOLLC (e_value=3e-151) RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic; AltName: Full=LHCI type II CAB-7; Flags: Precursor;; (*SWP) sp|P10708|CB12_SOLLC (e_value=9e-153) Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1;; (*TAIR) AT3G61470.1 (e_value=2e-133) | Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257;; (*ITAG) Solyc10g006230.2.1 (e_value=6e-154) genomic_reference:SL2.40ch10 gene_region:920027-923670 transcript_region:SL2.40ch10:920027..923670+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein 7, chloroplastic (AHRD V1 ***- CB12_SOLLC); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00019265g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|95; (*GB) gi|359473751|ref|XP_003631355.1| (e_value=8e-45) PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera];; (*TAIR) AT5G43260.1 (e_value=5e-43) | Symbols: | chaperone protein dnaJ-related | chr5:17357693-17357986 REVERSE LENGTH=97;; (*ITAG) Solyc05g015470.1.1 (e_value=1e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:10598462-10598755 transcript_region:SL2.40ch05:10598462..10598755- functional_description:"Drought-induced protein 1 (AHRD V1 ***- Q6XPS8_9FABA)"; NbS00036334g0003.1 protein AED:0.08 eAED:0.08 QI:155|0.87|0.77|1|0.87|0.77|9|0|468; (*GB) gi|359811337|ref|NP_001241486.1| (e_value=0.0) uncharacterized protein LOC100784099 [Glycine max];; (*SWP) sp|Q5ZMS3|IF2G_CHICK (e_value=0.0) Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1;; (*TAIR) AT1G04170.1 (e_value=0.0) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc01g066690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:67249597-67259592 transcript_region:SL2.40ch01:67249597..67259592+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00059132g0004.1 protein AED:0.08 eAED:0.08 QI:135|1|1|1|1|1|3|507|177; (*GB) gi|4887018|gb|AAD32145.1|AF123507_1 (e_value=3e-83) Nt-iaa4.5 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24542|AX22D_VIGRR (e_value=5e-72) Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1;; (*TAIR) AT5G43700.1 (e_value=2e-71) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc06g084070.2.1 (e_value=6e-85) genomic_reference:SL2.40ch06 gene_region:45616812-45617639 transcript_region:SL2.40ch06:45616812..45617639+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00004546g0002.1 protein AED:0.43 eAED:0.43 QI:0|0|0.33|0.66|0|0.33|3|0|152; (*GB) gi|225423472|ref|XP_002274189.1| (e_value=5e-18) PREDICTED: UPF0420 protein C16orf58 homolog [Vitis vinifera];; (*ITAG) Solyc05g012290.2.1 (e_value=1e-32) genomic_reference:SL2.40ch05 gene_region:5568469-5575841 transcript_region:SL2.40ch05:5568469..5575841+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbS00006386g0002.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.25|1|1|4|0|158 NbS00059989g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|260; (*GB) gi|86155929|gb|ABC86702.1| (e_value=4e-76) harpin-induced protein-like [Coffea arabica];; (*TAIR) AT5G36970.1 (e_value=8e-65) | Symbols: NHL25 | NDR1/HIN1-like 25 | chr5:14604367-14605194 REVERSE LENGTH=248;; (*ITAG) Solyc02g081450.2.1 (e_value=3e-109) genomic_reference:SL2.40ch02 gene_region:39991058-39992343 transcript_region:SL2.40ch02:39991058..39992343- functional_description:"NHL1 (Fragment) (AHRD V1 *--- B0LZI0_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00059989g0008.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|661; (*GB) gi|225466169|ref|XP_002263918.1| (e_value=1e-109) PREDICTED: uncharacterized protein LOC100261489 [Vitis vinifera];; (*TAIR) AT1G65710.1 (e_value=1e-21) | Symbols: | unknown protein; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G37010.1); Has 2241 Blast hits to 1776 proteins in 164 species: Archae - 0; Bacteria - 29; Metazoa - 1759; Fungi - 94; Plants - 93; Viruses - 17; Other Eukaryotes - 249 (source: NCBI BLink). | chr1:24437057-24438424 REVERSE LENGTH=455;; (*ITAG) Solyc02g081440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39987857-39990616 transcript_region:SL2.40ch02:39987857..39990616+ functional_description:"Os02g0638200 protein (Fragment) (AHRD V1 *-*- Q0DZ92_ORYSJ)"; NbS00045061g0002.1 protein AED:0.10 eAED:0.10 QI:64|1|1|1|0.64|0.6|15|187|786; (*GB) gi|296083688|emb|CBI23677.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S403|PHO1_ARATH (e_value=0.0) Phosphate transporter PHO1 OS=Arabidopsis thaliana GN=PHO1 PE=2 SV=1;; (*TAIR) AT3G23430.1 (e_value=0.0) | Symbols: PHO1, ATPHO1 | phosphate 1 | chr3:8387818-8393242 REVERSE LENGTH=782;; (*ITAG) Solyc09g090360.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65211853-65222388 transcript_region:SL2.40ch09:65211853..65222388- go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00045061g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.66|1|0.5|0.33|3|0|721; (*GB) gi|147770729|emb|CAN71289.1| (e_value=0.0) hypothetical protein VITISV_019349 [Vitis vinifera];; (*SWP) sp|B5WWZ8|FAO1_LOTJA (e_value=0.0) Long-chain-alcohol oxidase FAO1 OS=Lotus japonicus GN=FAO1 PE=1 SV=1;; (*TAIR) AT3G23410.1 (e_value=0.0) | Symbols: ATFAO3, FAO3 | fatty alcohol oxidase 3 | chr3:8382860-8386024 FORWARD LENGTH=746;; (*ITAG) Solyc09g090350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65206809-65211763 transcript_region:SL2.40ch09:65206809..65211763+ go_terms:GO:0009055,GO:0046577 functional_description:"Oxidoreductase (AHRD V1 ***- B6SXM3_MAIZE); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0009055,GO:0046577 NbS00005327g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|1|1|1|1|3|6|177; (*GB) gi|365222946|gb|AEW69825.1| (e_value=1e-84) Hop-interacting protein THI105 [Solanum lycopersicum];; (*SWP) sp|A5PJA1|KAD6_BOVIN (e_value=5e-50) Adenylate kinase isoenzyme 6 OS=Bos taurus GN=TAF9 PE=2 SV=1;; (*TAIR) AT5G60340.1 (e_value=2e-65) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24275098-24275891 REVERSE LENGTH=178;; (*ITAG) Solyc11g072410.1.1 (e_value=2e-87) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52664923-52667332 transcript_region:SL2.40ch11:52664923..52667332+ functional_description:"Adenylate kinase isoenzyme 6 (AHRD V1 **-- B5X3S3_SALSA)"; NbS00005327g0015.1 protein AED:0.07 eAED:0.07 QI:0|1|0.8|1|1|1|5|0|486; (*GB) gi|48210049|gb|AAT40548.1| (e_value=7e-177) Putative vicilin, identical [Solanum demissum];; (*SWP) sp|Q9SPL3|AMP23_MACIN (e_value=1e-34) Vicilin-like antimicrobial peptides 2-3 (Fragment) OS=Macadamia integrifolia GN=AMP2-3 PE=1 SV=1;; (*TAIR) AT2G28490.1 (e_value=9e-140) | Symbols: | RmlC-like cupins superfamily protein | chr2:12178812-12180983 REVERSE LENGTH=511;; (*ITAG) Solyc06g075260.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43096458-43098509 transcript_region:SL2.40ch06:43096458..43098509- go_terms:GO:0045735 functional_description:"Vicilin (Fragment) (AHRD V1 *--- Q41726_ZAMFU); contains Interpro domain(s) IPR011051 Cupin, RmlC-type "; GO:0045735 NbS00019440g0007.1 protein AED:0.05 eAED:0.05 QI:52|1|1|1|1|1|3|197|291; (*GB) gi|350535953|ref|NP_001234478.1| (e_value=1e-175) xyloglucan endotransglucosylase-hydrolase XTH9 precursor [Solanum lycopersicum];; (*SWP) sp|Q8LG58|XTH16_ARATH (e_value=4e-135) Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2;; (*TAIR) AT3G23730.1 (e_value=3e-136) | Symbols: XTH16 | xyloglucan endotransglucosylase/hydrolase 16 | chr3:8550222-8551248 FORWARD LENGTH=291;; (*ITAG) Solyc07g055990.2.1 (e_value=1e-180) genomic_reference:SL2.40ch07 gene_region:61215070-61217037 transcript_region:SL2.40ch07:61215070..61217037+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 **** C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00019440g0008.1 protein AED:0.26 eAED:0.26 QI:201|1|1|1|1|1|5|270|340; (*GB) gi|225446869|ref|XP_002283859.1| (e_value=1e-135) PREDICTED: uncharacterized protein LOC100252338 [Vitis vinifera];; (*TAIR) AT3G58830.1 (e_value=4e-117) | Symbols: | haloacid dehalogenase (HAD) superfamily protein | chr3:21755172-21756637 REVERSE LENGTH=343;; (*ITAG) Solyc07g055980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61203405-61207625 transcript_region:SL2.40ch07:61203405..61207625- go_terms:GO:0003824 functional_description:"HAD superfamily (Subfamily IIIA) phosphatase TIGR01668 (AHRD V1 *-*- B1I3D3_DESAP); contains Interpro domain(s) IPR010021 HAD-superfamily phosphatase, subfamily IIIA "; GO:0003824 NbS00019440g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.33|1|1|1|3|0|397; (*GB) gi|224066581|ref|XP_002302147.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q6WG30|T5H_TAXCU (e_value=3e-94) Taxadiene 5-alpha hydroxylase OS=Taxus cuspidata PE=1 SV=2;; (*TAIR) AT2G42850.1 (e_value=2e-165) | Symbols: CYP718 | cytochrome P450, family 718 | chr2:17831662-17833309 FORWARD LENGTH=485;; (*ITAG) Solyc07g055970.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61200877-61202548 transcript_region:SL2.40ch07:61200877..61202548+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00031659g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|514; (*GB) gi|225426773|ref|XP_002276226.1| (e_value=0.0) PREDICTED: multidrug and toxin extrusion protein 1-like [Vitis vinifera];; (*SWP) sp|Q9SIA3|MATE6_ARATH (e_value=1e-63) MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=2 SV=2;; (*TAIR) AT4G23030.1 (e_value=0.0) | Symbols: | MATE efflux family protein | chr4:12072857-12074365 FORWARD LENGTH=502;; (*ITAG) Solyc08g080310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60786990-60788474 transcript_region:SL2.40ch08:60786990..60788474+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_PROMH); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00031500g0012.1 protein AED:0.07 eAED:0.11 QI:0|0.66|0.57|1|0.5|0.28|7|468|701; (*GB) gi|225457536|ref|XP_002272226.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc08g045850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:36801940-36806300 transcript_region:SL2.40ch08:36801940..36806300- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031500g0013.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0.66|0.75|4|0|533; (*GB) gi|224086032|ref|XP_002307786.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=8e-104) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=6e-105) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc01g112140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89987101-89989597 transcript_region:SL2.40ch01:89987101..89989597- go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00052759g0005.1 protein AED:0.03 eAED:0.04 QI:0|0|0.5|1|0|1|2|147|163; (*GB) gi|225467313|ref|XP_002262851.1| (e_value=1e-77) PREDICTED: uncharacterized protein LOC100257374 [Vitis vinifera];; (*TAIR) AT2G24290.1 (e_value=8e-73) | Symbols: | Protein of unknown function (DUF1068) | chr2:10338779-10339859 FORWARD LENGTH=173;; (*ITAG) Solyc07g005180.2.1 (e_value=1e-105) genomic_reference:SL2.40ch07 gene_region:176824-181975 transcript_region:SL2.40ch07:176824..181975- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010471 Protein of unknown function DUF1068 "; NbS00041148g0001.1 protein AED:0.20 eAED:0.21 QI:0|0|0|1|0|0|4|0|230; (*ITAG) Solyc04g016030.1.1 (e_value=8e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:6686220-6686768 transcript_region:SL2.40ch04:6686220..6686768+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00043598g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.88|1|1|1|25|0|1426; (*GB) gi|375273923|gb|AFA43815.1| (e_value=0.0) ABCG/PDR subfamily ABC transporter [Petunia axillaris];; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=0.0) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc08g067620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53842288-53848833 transcript_region:SL2.40ch08:53842288..53848833+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00004592g0013.1 protein AED:0.24 eAED:0.24 QI:382|1|1|1|0.33|0.42|7|0|492; (*GB) gi|77403671|dbj|BAE46414.1| (e_value=0.0) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=1e-20) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT1G34220.2 (e_value=7e-113) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:12463102-12465911 REVERSE LENGTH=619;; (*ITAG) Solyc04g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57131447-57136751 transcript_region:SL2.40ch04:57131447..57136751+ functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00004592g0014.1 protein AED:0.15 eAED:0.15 QI:149|0.90|0.83|1|0.81|0.83|12|0|621; (*GB) gi|148923085|gb|ABR18800.1| (e_value=0.0) somatic embryogenesis receptor-like kinase 1 [Solanum peruvianum];; (*SWP) sp|Q9XIC7|SERK2_ARATH (e_value=0.0) Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1;; (*TAIR) AT1G34210.1 (e_value=0.0) | Symbols: SERK2, ATSERK2 | somatic embryogenesis receptor-like kinase 2 | chr1:12459078-12462752 FORWARD LENGTH=628;; (*ITAG) Solyc04g072570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57137144-57143849 transcript_region:SL2.40ch04:57137144..57143849- go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00014593g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|222; (*GB) gi|482815|gb|AAB40028.1| (e_value=1e-112) S6-RNase [Nicotiana alata];; (*SWP) sp|Q40379|RNS6_NICAL (e_value=5e-112) Ribonuclease S-6 OS=Nicotiana alata PE=1 SV=2;; (*TAIR) AT1G26820.1 (e_value=1e-29) | Symbols: RNS3 | ribonuclease 3 | chr1:9292760-9293722 REVERSE LENGTH=222;; (*ITAG) Solyc01g055200.1.1 (e_value=9e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:44601060-44601822 transcript_region:SL2.40ch01:44601060..44601822- go_terms:GO:0004521 functional_description:"S8 self-incompatibility ribonuclease (Fragment) (AHRD V1 ***- Q9FPV5_PETIN); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00062041g0003.1 protein AED:0.09 eAED:0.09 QI:208|1|1|1|0.5|0.66|3|221|245; (*GB) gi|225425172|ref|XP_002264588.1| (e_value=2e-86) PREDICTED: NAC domain-containing protein 29 isoform 1 [Vitis vinifera];; (*SWP) sp|O49255|NAC29_ARATH (e_value=4e-43) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT5G13180.1 (e_value=3e-70) | Symbols: ANAC083, VNI2, NAC083 | NAC domain containing protein 83 | chr5:4196643-4197577 FORWARD LENGTH=252;; (*ITAG) Solyc03g097650.2.1 (e_value=3e-120) genomic_reference:SL2.40ch03 gene_region:53428478-53430021 transcript_region:SL2.40ch03:53428478..53430021+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00022016g0007.1 protein AED:0.00 eAED:0.00 QI:468|1|0.66|1|1|1|3|403|229; (*GB) gi|255581935|ref|XP_002531766.1| (e_value=8e-68) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9LTT3|HMG10_ARATH (e_value=6e-52) High mobility group B protein 10 OS=Arabidopsis thaliana GN=HMGB10 PE=2 SV=1;; (*TAIR) AT3G13350.1 (e_value=5e-53) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr3:4335721-4337804 REVERSE LENGTH=319;; (*ITAG) Solyc12g016190.1.1 (e_value=8e-111) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6311971-6326406 transcript_region:SL2.40ch12:6311971..6326406+ go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00022016g0006.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|1|1|2|0|225; (*GB) gi|1786140|dbj|BAA19113.1| (e_value=3e-20) tapetum-specific zinc finger protein 1 [Petunia x hybrida];; (*TAIR) AT4G35280.1 (e_value=9e-12) | Symbols: | C2H2-like zinc finger protein | chr4:16787429-16788283 REVERSE LENGTH=284;; (*ITAG) Solyc07g066160.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:64873053-64874048 transcript_region:SL2.40ch07:64873053..64874048- go_terms:GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 *-*- D7MD22_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00022016g0115.1 protein AED:0.10 eAED:0.11 QI:434|1|0.8|1|1|0.8|5|0|800 NbS00022016g0102.1 protein AED:0.22 eAED:0.22 QI:0|1|0.88|1|1|1|9|0|446 NbS00022016g0110.1 protein AED:0.25 eAED:0.25 QI:405|1|1|1|0.33|0.5|4|443|346 NbS00002214g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|0.5|0.33|3|1461|630; (*GB) gi|37781278|gb|AAP44391.1| (e_value=0.0) nematode resistance-like protein [Solanum tuberosum];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=2e-115) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G17680.1 (e_value=2e-123) | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr5:5822999-5827153 FORWARD LENGTH=1294;; (*ITAG) Solyc07g055380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60757923-60760984 transcript_region:SL2.40ch07:60757923..60760984- go_terms:GO:0004872 functional_description:"Nbs-lrr, resistance protein"; GO:0004872 NbS00005961g0007.1 protein AED:0.29 eAED:0.37 QI:0|0.42|0.25|1|1|1|8|0|470; (*GB) gi|296082099|emb|CBI21104.3| (e_value=3e-40) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g041760.1.1 (e_value=9e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:27016130-27017554 transcript_region:SL2.40ch08:27016130..27017554+ functional_description:"Histone-lysine N-methyltransferase-like protein (AHRD V1 *-*- A9RXF6_PHYPA)"; NbS00005961g0012.1 protein AED:0.15 eAED:0.81 QI:0|0|0|1|1|1|2|0|466; (*GB) gi|296082100|emb|CBI21105.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g041740.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:27004311-27006086 transcript_region:SL2.40ch08:27004311..27006086+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005961g0015.1 protein AED:0.17 eAED:0.17 QI:71|1|1|1|0.83|0.73|19|700|578; (*GB) gi|359475862|ref|XP_002283008.2| (e_value=0.0) PREDICTED: neurochondrin-like [Vitis vinifera];; (*SWP) sp|Q640K1|NCDN_XENLA (e_value=3e-12) Neurochondrin OS=Xenopus laevis GN=ncdn PE=2 SV=1;; (*TAIR) AT4G32050.1 (e_value=0.0) | Symbols: | neurochondrin family protein | chr4:15496620-15500717 FORWARD LENGTH=618;; (*ITAG) Solyc08g041780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27112190-27127890 transcript_region:SL2.40ch08:27112190..27127890- functional_description:"Neurochondrin family protein (AHRD V1 ***- D7MAS5_ARALY); contains Interpro domain(s) IPR008709 Neurochondrin "; NbS00005961g0011.1 protein AED:0.20 eAED:0.20 QI:313|1|1|1|0.87|0.77|9|282|322; (*GB) gi|388500814|gb|AFK38473.1| (e_value=0.0) unknown [Medicago truncatula];; (*TAIR) AT5G25265.1 (e_value=2e-179) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell, leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8754794-8756855 REVERSE LENGTH=366;; (*ITAG) Solyc08g041770.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:27032718-27037281 transcript_region:SL2.40ch08:27032718..27037281- functional_description:"Os04g0226400 protein (Fragment) (AHRD V1 *-*- C7J118_ORYSJ)"; NbS00008293g0005.1 protein AED:0.21 eAED:0.30 QI:0|0|0|0.71|0.5|0.57|7|0|487; (*GB) gi|224075499|ref|XP_002304655.1| (e_value=3e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5UNY4|YL728_MIMIV (e_value=2e-16) Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1;; (*TAIR) AT5G13210.1 (e_value=3e-160) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:4214567-4216588 FORWARD LENGTH=673;; (*ITAG) Solyc09g089940.1.1 (e_value=1e-150) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00035019g0004.1 protein AED:0.17 eAED:0.22 QI:0|0|0|0.8|1|1|5|0|424; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=0.0) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=0.0) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=0.0) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00011718g0013.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.6|1|0|0|5|229|304; (*GB) gi|225426479|ref|XP_002270961.1| (e_value=4e-117) PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=8e-32) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT4G01440.1 (e_value=3e-72) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr4:596531-598512 FORWARD LENGTH=365;; (*ITAG) Solyc12g099580.1.1 (e_value=1e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65025300-65027399 transcript_region:SL2.40ch12:65025300..65027399+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LP41_ARALY); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00011718g0002.1 protein AED:0.21 eAED:0.21 QI:0|1|0.33|1|1|1|3|0|497; (*GB) gi|297736872|emb|CBI26073.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUS8|P2C40_ARATH (e_value=4e-159) Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1;; (*TAIR) AT3G16560.1 (e_value=3e-160) | Symbols: | Protein phosphatase 2C family protein | chr3:5636051-5637702 REVERSE LENGTH=493;; (*ITAG) Solyc12g099600.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65030399-65034813 transcript_region:SL2.40ch12:65030399..65034813+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein (AHRD V1 ***- B6T998_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00011718g0004.1 protein AED:0.22 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|425; (*GB) gi|225445472|ref|XP_002281953.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Vitis vinifera];; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=7e-177) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=5e-178) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011718g0010.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.33|1|1|3|0|100; (*GB) gi|225426477|ref|XP_002277018.1| (e_value=5e-17) PREDICTED: uncharacterized protein LOC100254752 [Vitis vinifera];; (*ITAG) Solyc01g066860.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:67453578-67454383 transcript_region:SL2.40ch01:67453578..67454383- functional_description:"Unknown Protein (AHRD V1)"; NbS00011718g0003.1 protein AED:0.42 eAED:0.52 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|224110558|ref|XP_002315557.1| (e_value=1e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0E1D7|FLP3_ORYSJ (e_value=4e-38) Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os02g0460200 PE=2 SV=1;; (*TAIR) AT5G24860.1 (e_value=1e-36) | Symbols: FPF1, ATFPF1 | flowering promoting factor 1 | chr5:8541822-8542154 FORWARD LENGTH=110;; (*ITAG) Solyc01g066980.2.1 (e_value=3e-52) genomic_reference:SL2.40ch01 gene_region:67684096-67684727 transcript_region:SL2.40ch01:67684096..67684727- functional_description:"Flowering promoting factor-like 1 (Fragment) (AHRD V1 *--- A6MZJ6_ORYSI)"; NbS00058637g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.8|0.83|0.83|1|1|6|384|320; (*GB) gi|350539489|ref|NP_001234660.1| (e_value=0.0) mitogen-activated protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|Q40353|MMK2_MEDSA (e_value=0.0) Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1;; (*TAIR) AT4G01370.1 (e_value=0.0) | Symbols: ATMPK4, MPK4 | MAP kinase 4 | chr4:567219-568889 FORWARD LENGTH=376;; (*ITAG) Solyc05g049970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58964608-58969530 transcript_region:SL2.40ch05:58964608..58969530+ go_terms:GO:0016908 functional_description:"Mitogen-activated protein kinase 4 (AHRD V1 **** D7R517_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0016908 NbS00061397g0006.1 protein AED:0.05 eAED:0.05 QI:27|0.5|0.33|1|0.5|0.33|3|7|362; (*GB) gi|6625810|gb|AAF19402.1|AF203480_1 (e_value=2e-150) phosphoenolpyruvate carboxylase kinase, partial [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=1e-84) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.1 (e_value=9e-86) | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753232 FORWARD LENGTH=284;; (*ITAG) Solyc04g009900.2.1 (e_value=8e-153) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001081g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|348; (*GB) gi|255560205|ref|XP_002521120.1| (e_value=7e-77) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G24740.2 (e_value=2e-79) | Symbols: | Protein of unknown function (DUF1644) | chr3:9032397-9033461 FORWARD LENGTH=354;; (*ITAG) Solyc09g061750.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:55888369-55889505 transcript_region:SL2.40ch09:55888369..55889505+ functional_description:"Os07g0419800 protein (Fragment) (AHRD V1 *--- Q0D6Y1_ORYSJ); contains Interpro domain(s) IPR012866 Protein of unknown function DUF1644 "; NbS00042933g0003.1 protein AED:0.07 eAED:0.07 QI:480|1|1|1|1|1|3|645|321; (*GB) gi|224066319|ref|XP_002302081.1| (e_value=3e-132) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22970.1 (e_value=1e-110) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc09g065760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59639649-59642438 transcript_region:SL2.40ch09:59639649..59642438+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00023515g0003.1 protein AED:0.14 eAED:0.14 QI:74|1|1|1|1|1|6|246|258; (*GB) gi|82623429|gb|ABB87129.1| (e_value=2e-141) 60S ribosomal protein L7A-like [Solanum tuberosum];; (*SWP) sp|P35685|RL7A_ORYSJ (e_value=2e-133) 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1;; (*TAIR) AT3G62870.1 (e_value=5e-134) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr3:23242862-23244273 REVERSE LENGTH=256;; (*ITAG) Solyc06g064460.2.1 (e_value=3e-144) genomic_reference:SL2.40ch06 gene_region:36532483-36535005 transcript_region:SL2.40ch06:36532483..36535005- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00029227g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|3|0|395; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=4e-153) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=6e-127) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=2e-48) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc11g066670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49527008-49528411 transcript_region:SL2.40ch11:49527008..49528411+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 *-*- B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00030987g0003.1 protein AED:0.14 eAED:0.17 QI:0|0|0|1|0|0|3|0|220; (*GB) gi|357486455|ref|XP_003613515.1| (e_value=1e-37) hypothetical protein MTR_5g037540 [Medicago truncatula];; (*TAIR) AT3G01311.1 (e_value=3e-35) | Symbols: | Protein of unknown function (DUF569) | chr3:103043-104287 REVERSE LENGTH=292;; (*ITAG) Solyc02g087580.2.1 (e_value=1e-58) genomic_reference:SL2.40ch02 gene_region:44548500-44552413 transcript_region:SL2.40ch02:44548500..44552413+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 *--- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00041927g0007.1 protein AED:0.33 eAED:0.35 QI:0|0.33|0.25|1|0.33|0.25|4|41|195; (*GB) gi|350537909|ref|NP_001233805.1| (e_value=2e-65) monoterpene synthase 1 [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=2e-51) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25820.2 (e_value=3e-42) | Symbols: TPS-CIN | terpene synthase-like sequence-1,8-cineole | chr3:9439282-9442507 FORWARD LENGTH=444;; (*ITAG) Solyc01g105890.2.1 (e_value=4e-68) genomic_reference:SL2.40ch01 gene_region:85673319-85676126 transcript_region:SL2.40ch01:85673319..85676126+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00041927g0001.1 protein AED:0.45 eAED:0.45 QI:0|1|0|1|1|1|2|0|67; (*GB) gi|350537985|ref|NP_001233809.1| (e_value=5e-30) monoterpene synthase 2 [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=2e-24) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT3G25810.1 (e_value=3e-17) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:9430805-9433844 FORWARD LENGTH=598;; (*ITAG) Solyc01g105880.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:85657924-85660631 transcript_region:SL2.40ch01:85657924..85660631+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00041927g0008.1 protein AED:0.38 eAED:0.39 QI:0|0|0|1|0|0|2|0|149; (*GB) gi|145666652|gb|ABP88782.1| (e_value=3e-62) plastid 1,8-cineol synthase precursor [Nicotiana suaveolens];; (*SWP) sp|A7IZZ2|TPS2_CANSA (e_value=8e-18) (+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1;; (*TAIR) AT4G16740.1 (e_value=3e-17) | Symbols: ATTPS03, TPS03 | terpene synthase 03 | chr4:9407856-9410877 FORWARD LENGTH=565;; (*ITAG) Solyc01g105870.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:85651702-85655605 transcript_region:SL2.40ch01:85651702..85655605+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00002361g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.66|1|0.6|0.5|6|416|521; (*GB) gi|225444597|ref|XP_002274191.1| (e_value=5e-112) PREDICTED: uncharacterized protein LOC100242383 [Vitis vinifera];; (*SWP) sp|Q9URW6|YIE2_SCHPO (e_value=7e-45) SH3 domain-containing protein PJ696.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPJ696.02 PE=1 SV=1;; (*TAIR) AT3G43230.1 (e_value=4e-103) | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr3:15207776-15209599 FORWARD LENGTH=485;; (*ITAG) Solyc07g017500.2.1 (e_value=2e-129) genomic_reference:SL2.40ch07 gene_region:7391210-7395554 transcript_region:SL2.40ch07:7391210..7395554+ go_terms:GO:0008270 functional_description:"Lateral signaling target protein 2 homolog (AHRD V1 *--- LST2_DROWI); contains Interpro domain(s) IPR007461 Ysc84 actin-binding domain "; GO:0008270 NbS00002361g0012.1 protein AED:0.22 eAED:0.23 QI:0|0.38|0.21|0.92|0.53|0.35|14|794|1511; (*GB) gi|356522446|ref|XP_003529857.1| (e_value=0.0) PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase-like [Glycine max];; (*SWP) sp|P34756|FAB1_YEAST (e_value=4e-58) 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAB1 PE=1 SV=3;; (*TAIR) AT3G14270.1 (e_value=0.0) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc07g017510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:7403047-7425731 transcript_region:SL2.40ch07:7403047..7425731+ go_terms:GO:0016308,GO:0035091 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-* D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0016308,GO:0035091 NbS00018420g0004.1 protein AED:0.77 eAED:0.96 QI:0|0|0|0.75|1|1|4|0|105 NbS00026464g0002.1 protein AED:0.24 eAED:0.24 QI:90|0|0.5|1|0|0.5|2|0|110; (*GB) gi|115461126|ref|NP_001054163.1| (e_value=8e-75) Os04g0663300 [Oryza sativa Japonica Group];; (*SWP) sp|Q0WMV8|PHF5B_ARATH (e_value=4e-76) PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1;; (*TAIR) AT2G30000.1 (e_value=3e-77) | Symbols: | PHF5-like protein | chr2:12804042-12804374 REVERSE LENGTH=110;; (*ITAG) Solyc12g010340.1.1 (e_value=2e-77) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3407156-3407488 transcript_region:SL2.40ch12:3407156..3407488+ functional_description:"Pre-mRNA-splicing factor ini1 (AHRD V1 **-- B9T1J2_RICCO); contains Interpro domain(s) IPR005345 PHF5-like "; NbS00026464g0005.1 protein AED:0.21 eAED:0.21 QI:36|1|1|1|1|1|3|104|373; (*GB) gi|467689|emb|CAA55128.1| (e_value=0.0) chitinase/lysozyme [Nicotiana tabacum];; (*SWP) sp|Q13231|CHIT1_HUMAN (e_value=4e-41) Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1;; (*TAIR) AT4G19810.1 (e_value=1e-140) | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379;; (*ITAG) Solyc07g005100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:123941-126335 transcript_region:SL2.40ch07:123941..126335+ go_terms:GO:0008084,GO:0008843 functional_description:"Chitinase-like protein (AHRD V1 ***- O81861_ARATH); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0008084,GO:0008843 NbS00026464g0007.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|0|0|2|0|121; (*GB) gi|224142427|ref|XP_002324559.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPZ3|Y1141_ARATH (e_value=3e-25) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3;; (*TAIR) AT1G67520.1 (e_value=2e-26) | Symbols: | lectin protein kinase family protein | chr1:25303439-25305857 REVERSE LENGTH=587;; (*ITAG) Solyc07g005110.2.1 (e_value=6e-37) genomic_reference:SL2.40ch07 gene_region:128660-133395 transcript_region:SL2.40ch07:128660..133395+ go_terms:GO:0006032,GO:0005975,GO:0006468 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 *-*- Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006032,GO:0005975,GO:0006468 NbS00033837g0001.1 protein AED:0.01 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|329; (*ITAG) Solyc04g008070.1.1 (e_value=7e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00006049g0005.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|485; (*GB) gi|255550723|ref|XP_002516410.1| (e_value=0.0) pepsin A, putative [Ricinus communis];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=3e-32) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT5G45120.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:18241003-18242478 FORWARD LENGTH=491;; (*ITAG) Solyc02g069360.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33856468-33857925 transcript_region:SL2.40ch02:33856468..33857925+ go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-2 (AHRD V1 **-- B6SJT4_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00006049g0016.1 protein AED:0.12 eAED:0.13 QI:0|0|0|1|1|1|2|0|442; (*GB) gi|224119320|ref|XP_002331282.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P48724|IF5_PHAVU (e_value=2e-174) Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G77840.1 (e_value=1e-158) | Symbols: | Translation initiation factor IF2/IF5 | chr1:29269087-29270400 FORWARD LENGTH=437;; (*ITAG) Solyc02g091210.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47167119-47168471 transcript_region:SL2.40ch02:47167119..47168471+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00006049g0019.1 protein AED:0.17 eAED:0.17 QI:56|1|1|1|0|0|11|1651|253; (*ITAG) Solyc03g044840.1.1 (e_value=5e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00006049g0001.1 protein AED:0.20 eAED:0.20 QI:118|1|0.83|1|1|1|6|0|378; (*GB) gi|224054450|ref|XP_002298266.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C578|RCL1_ARATH (e_value=3e-156) Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1;; (*TAIR) AT5G22100.1 (e_value=2e-157) | Symbols: | RNA cyclase family protein | chr5:7329015-7330718 FORWARD LENGTH=375;; (*ITAG) Solyc02g069340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33836050-33839560 transcript_region:SL2.40ch02:33836050..33839560+ go_terms:GO:0006396,GO:0003824 functional_description:"RNA 3&apos-terminal phosphate cyclase-like protein (AHRD V1 ***- Q67XN9_ARATH); contains Interpro domain(s) IPR016443 RNA 3'-terminal phosphate cyclase-like, eukaryotic "; GO:0006396,GO:0003824 NbS00006049g0027.1 protein AED:0.43 eAED:0.43 QI:249|0.75|0.44|1|0.75|0.77|9|0|301; (*GB) gi|359484042|ref|XP_002263050.2| (e_value=1e-158) PREDICTED: transmembrane protein 56-like [Vitis vinifera];; (*SWP) sp|Q6PGS5|TM56B_XENLA (e_value=2e-17) Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1;; (*TAIR) AT1G31300.2 (e_value=2e-146) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:11194308-11195955 FORWARD LENGTH=278;; (*ITAG) Solyc02g069350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33842725-33851382 transcript_region:SL2.40ch02:33842725..33851382+ go_terms:GO:0016021 functional_description:"Transmembrane protein 56 (AHRD V1 ***- B6TI82_MAIZE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00006049g0009.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|94; (*ITAG) Solyc02g069330.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33832764-33833276 transcript_region:SL2.40ch02:33832764..33833276- go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00006049g0022.1 protein AED:0.32 eAED:0.32 QI:272|1|1|1|1|1|7|153|200; (*GB) gi|296878|emb|CAA50609.1| (e_value=2e-144) ras-related GTP-binding protein [Nicotiana tabacum];; (*SWP) sp|P31582|RAF2A_ARATH (e_value=2e-131) Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1 SV=1;; (*TAIR) AT5G45130.1 (e_value=2e-132) | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244495-18246060 FORWARD LENGTH=200;; (*ITAG) Solyc02g069370.2.1 (e_value=4e-147) genomic_reference:SL2.40ch02 gene_region:33859225-33867386 transcript_region:SL2.40ch02:33859225..33867386- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1C0G6_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0003924 NbS00006049g0023.1 protein AED:0.42 eAED:0.42 QI:0|0.66|0.57|0.85|1|0.85|7|115|260; (*GB) gi|224142645|ref|XP_002324665.1| (e_value=2e-80) Ca2+ antiporter/cation exchanger [Populus trichocarpa];; (*TAIR) AT3G55600.1 (e_value=2e-78) | Symbols: | Membrane fusion protein Use1 | chr3:20620682-20622341 FORWARD LENGTH=240;; (*ITAG) Solyc02g069380.2.1 (e_value=3e-128) genomic_reference:SL2.40ch02 gene_region:33867909-33875948 transcript_region:SL2.40ch02:33867909..33875948- go_terms:GO:0015491 functional_description:"Cation cation antiporter (AHRD V1 **** B6T2U8_MAIZE); contains Interpro domain(s) IPR019150 Vesicle transport protein, Use1 "; GO:0015491 NbS00058721g0005.1 protein AED:0.07 eAED:0.07 QI:177|0.85|0.62|1|0.85|0.75|8|0|430; (*GB) gi|225425204|ref|XP_002266641.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250497 [Vitis vinifera];; (*TAIR) AT1G69040.1 (e_value=3e-155) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25958196-25960079 FORWARD LENGTH=451;; (*ITAG) Solyc01g010000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbC25826321g0003.1 protein AED:0.26 eAED:0.26 QI:68|0.5|1|1|0.5|0.66|3|105|101; (*GB) gi|334186541|ref|NP_001190734.1| (e_value=1e-21) Imidazoleglycerol-phosphate dehydratase 2 [Arabidopsis thaliana];; (*SWP) sp|O23346|HIS7B_ARATH (e_value=5e-22) Imidazoleglycerol-phosphate dehydratase 2 OS=Arabidopsis thaliana GN=At4g14910 PE=2 SV=2;; (*TAIR) AT4G14910.3 (e_value=3e-24) | Symbols: HISN5B | HISTIDINE BIOSYNTHESIS 5B | chr4:8528441-8530105 REVERSE LENGTH=282;; (*ITAG) Solyc09g076020.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:63204638-63210368 transcript_region:SL2.40ch09:63204638..63210368+ go_terms:GO:0004424 functional_description:"Imidazoleglycerol-phosphate dehydratase (AHRD V1 **** B9RTS0_RICCO); contains Interpro domain(s) IPR000807 Imidazole glycerol-phosphate dehydratase "; GO:0004424 NbS00005170g0002.1 protein AED:0.27 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|122; (*GB) gi|225453816|ref|XP_002276737.1| (e_value=1e-24) PREDICTED: early nodulin-like protein 1-like [Vitis vinifera];; (*ITAG) Solyc01g094040.2.1 (e_value=6e-46) genomic_reference:SL2.40ch01 gene_region:77372507-77374920 transcript_region:SL2.40ch01:77372507..77374920- go_terms:GO:0009055 functional_description:"Plastocyanin-like domain containing protein expressed (AHRD V1 **-- Q2QRP3_ORYSJ); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00005170g0006.1 protein AED:0.32 eAED:0.32 QI:197|0.91|0.84|1|0.75|0.61|13|191|544; (*GB) gi|349732085|ref|NP_001231830.1| (e_value=0.0) CLB1 [Solanum lycopersicum];; (*SWP) sp|Q5DTI8|ESYT3_MOUSE (e_value=2e-28) Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2;; (*TAIR) AT3G61050.2 (e_value=0.0) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc01g094030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77358539-77370893 transcript_region:SL2.40ch01:77358539..77370893- go_terms:GO:0008289 functional_description:"Syt1 synaptotagmin Ca2+-dependent lipid-binding protein putati (IC) (AHRD V1 *--* Q01EW7_OSTTA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00012296g0005.1 protein AED:0.20 eAED:0.20 QI:356|0.90|0.75|1|0.90|0.91|12|0|788; (*GB) gi|85069279|gb|ABC69711.1| (e_value=0.0) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|A2ZET6|ARFW_ORYSI (e_value=1e-116) Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1;; (*TAIR) AT5G62000.3 (e_value=5e-97) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc03g118290.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61268685-61276156 transcript_region:SL2.40ch03:61268685..61276156+ go_terms:GO:0005515,GO:0003700 functional_description:"Auxin response factor 2 (AHRD V1 **** Q2LAJ3_SOLLC); contains Interpro domain(s) IPR011525 Aux/IAA-ARF-dimerisation IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0003700 NbS00012296g0003.1 protein AED:0.65 eAED:1.00 QI:0|0|0|1|1|1|2|0|62 NbS00025322g0006.1 protein AED:0.30 eAED:0.31 QI:0|0.7|0.81|1|0.5|0.63|11|0|280; (*GB) gi|76573363|gb|ABA46786.1| (e_value=8e-154) unknown [Solanum tuberosum];; (*SWP) sp|Q54RA4|Y3291_DICDI (e_value=2e-39) Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1;; (*TAIR) AT3G50210.3 (e_value=2e-130) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:18614338-18616229 REVERSE LENGTH=332;; (*ITAG) Solyc02g093080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48592527-48596208 transcript_region:SL2.40ch02:48592527..48596208- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* ACCO1_DICMU); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00016437g0001.1 protein AED:0.09 eAED:0.09 QI:120|1|0.5|1|0|0|2|0|773; (*GB) gi|225448453|ref|XP_002269430.1| (e_value=7e-162) PREDICTED: zinc finger CCCH domain-containing protein 29-like [Vitis vinifera];; (*SWP) sp|Q93ZS9|C3H47_ARATH (e_value=4e-131) Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1;; (*TAIR) AT3G55980.1 (e_value=3e-132) | Symbols: SZF1, ATSZF1 | salt-inducible zinc finger 1 | chr3:20776857-20778599 FORWARD LENGTH=580;; (*ITAG) Solyc05g052570.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61926638-61928431 transcript_region:SL2.40ch05:61926638..61928431- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00016437g0003.1 protein AED:0.53 eAED:0.58 QI:0|0.16|0|0.85|1|1|7|0|370; (*GB) gi|255562308|ref|XP_002522161.1| (e_value=2e-144) Dual specificity protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9UNI6|DUS12_HUMAN (e_value=1e-29) Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1;; (*TAIR) AT3G23610.3 (e_value=3e-15) | Symbols: DSPTP1 | dual specificity protein phosphatase 1 | chr3:8478280-8479651 FORWARD LENGTH=228;; (*ITAG) Solyc12g021190.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14653912-14654978 transcript_region:SL2.40ch12:14653912..14654978+ functional_description:"Dual specificity protein phosphatase (AHRD V1 ***- Q2HSZ6_MEDTR)"; NbS00000486g0001.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|480; (*GB) gi|255588032|ref|XP_002534483.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=5e-34) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT5G57480.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:23279406-23280968 REVERSE LENGTH=520;; (*ITAG) Solyc12g055810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47162272-47164724 transcript_region:SL2.40ch12:47162272..47164724+ go_terms:GO:0005524,GO:0017111 functional_description:"AAA-ATPase (AHRD V1 **-- C3TX92_BRASY); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbC25681456g0001.1 protein AED:0.28 eAED:0.29 QI:0|1|0.8|1|1|1|5|213|136; (*GB) gi|225432264|ref|XP_002275833.1| (e_value=5e-82) PREDICTED: uncharacterized protein LOC100254500 [Vitis vinifera];; (*TAIR) AT4G15840.1 (e_value=4e-78) | Symbols: | BTB/POZ domain-containing protein | chr4:8996963-9000852 FORWARD LENGTH=836;; (*ITAG) Solyc01g080620.2.1 (e_value=4e-90) genomic_reference:SL2.40ch01 gene_region:72360030-72370043 transcript_region:SL2.40ch01:72360030..72370043+ go_terms:GO:0005515 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_HUMAN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00057151g0001.1 protein AED:0.29 eAED:0.30 QI:299|0|0.5|1|0|0.5|2|0|279; (*GB) gi|225445484|ref|XP_002282063.1| (e_value=3e-120) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FIF7|PP435_ARATH (e_value=2e-60) Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1;; (*TAIR) AT5G59200.1 (e_value=2e-61) | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=544;; (*ITAG) Solyc09g090440.1.1 (e_value=3e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65305130-65306850 transcript_region:SL2.40ch09:65305130..65306850+ go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00004558g0003.1 protein AED:0.49 eAED:0.55 QI:0|0|0|1|1|1|2|0|158; (*GB) gi|15982240|emb|CAC91565.1| (e_value=1e-83) hydroperoxide lyase [Nicotiana attenuata];; (*SWP) sp|P48417|CP74_LINUS (e_value=3e-35) Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1;; (*TAIR) AT5G42650.1 (e_value=4e-36) | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase | chr5:17097803-17099359 REVERSE LENGTH=518;; (*ITAG) Solyc07g049690.2.1 (e_value=2e-70) genomic_reference:SL2.40ch07 gene_region:57369720-57376439 transcript_region:SL2.40ch07:57369720..57376439+ go_terms:GO:0020037 functional_description:"Cytochrome P450"; GO:0020037 NbS00013884g0007.1 protein AED:0.01 eAED:0.01 QI:212|1|1|1|1|1|2|442|100; (*GB) gi|351721079|ref|NP_001235150.1| (e_value=4e-36) uncharacterized protein LOC100499981 [Glycine max];; (*TAIR) AT2G44670.1 (e_value=1e-31) | Symbols: | Protein of unknown function (DUF581) | chr2:18425279-18425673 FORWARD LENGTH=93;; (*ITAG) Solyc01g088660.2.1 (e_value=3e-50) genomic_reference:SL2.40ch01 gene_region:75185596-75186764 transcript_region:SL2.40ch01:75185596..75186764+ functional_description:"Os04g0585900 protein (Fragment) (AHRD V1 *-*- Q0JAP2_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00012643g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|151; (*GB) gi|222822695|gb|ACM68460.1| (e_value=1e-54) stress-associated protein 10 [Solanum pennellii];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=6e-39) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=4e-40) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc12g100060.1.1 (e_value=4e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65288408-65288890 transcript_region:SL2.40ch12:65288408..65288890- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 ***- C1C2A2_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00012643g0003.1 protein AED:0.35 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|166; (*GB) gi|224057482|ref|XP_002299237.1| (e_value=7e-97) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54G07|SLMO_DICDI (e_value=1e-22) Protein slowmo homolog OS=Dictyostelium discoideum GN=slmo PE=3 SV=1;; (*TAIR) AT5G13070.1 (e_value=1e-94) | Symbols: | MSF1-like family protein | chr5:4148216-4149062 FORWARD LENGTH=183;; (*ITAG) Solyc12g100050.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65284796-65285353 transcript_region:SL2.40ch12:65284796..65285353- functional_description:"Slowmo homolog 2 (AHRD V1 **-- B5XGX8_SALSA); contains Interpro domain(s) IPR006797 PRELI/MSF1 "; NbS00012643g0004.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|222822653|gb|ACM68439.1| (e_value=8e-94) stress-associated protein 2 [Solanum lycopersicum];; (*SWP) sp|A3BDI8|SAP8_ORYSJ (e_value=5e-77) Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1;; (*TAIR) AT1G51200.4 (e_value=6e-54) | Symbols: | A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173;; (*ITAG) Solyc11g061770.1.1 (e_value=2e-96) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:45480136-45480648 transcript_region:SL2.40ch11:45480136..45480648- go_terms:GO:0008270 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 8 (AHRD V1 ***- SAP8_ORYSJ); contains Interpro domain(s) IPR002653 Zinc finger, A20-type IPR000058 Zinc finger, AN1-type "; GO:0008270 NbS00045302g0003.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|116; (*GB) gi|9858777|gb|AAG01124.1|AF273333_9 (e_value=8e-70) BAC19.9 [Solanum lycopersicum];; (*TAIR) AT3G57785.1 (e_value=2e-46) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:21404835-21405179 REVERSE LENGTH=114;; (*ITAG) Solyc02g085540.1.1 (e_value=2e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42961548-42961880 transcript_region:SL2.40ch02:42961548..42961880- functional_description:"NADH ubiquinone oxidoreductase kD subunit (AHRD V1 **-- C5FGY8_NANOT)"; NbS00045302g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|567; (*GB) gi|37223173|gb|AAQ90182.1| (e_value=0.0) ntp101 [Nicotiana tabacum];; (*SWP) sp|P29162|ASOL_TOBAC (e_value=0.0) L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G55560.1 (e_value=0.0) | Symbols: sks14 | SKU5 similar 14 | chr1:20754474-20756527 REVERSE LENGTH=549;; (*ITAG) Solyc01g005510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:346845-349013 transcript_region:SL2.40ch01:346845..349013- go_terms:GO:0055114 functional_description:"Laccase-2 (AHRD V1 **-- LAC2_ORYSJ); contains Interpro domain(s) IPR011707 Multicopper oxidase, type 3 "; GO:0055114 NbS00039342g0009.1 protein AED:0.32 eAED:0.37 QI:0|1|0.5|1|1|1|2|0|71; (*GB) gi|225464816|ref|XP_002269292.1| (e_value=4e-21) PREDICTED: uncharacterized protein LOC100253491 [Vitis vinifera];; (*TAIR) AT3G22210.1 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7839135-7839431 REVERSE LENGTH=69;; (*ITAG) Solyc12g006440.1.1 (e_value=9e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:920615-921352 transcript_region:SL2.40ch12:920615..921352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00039342g0010.1 protein AED:0.21 eAED:0.21 QI:0|0.71|0.66|0.93|0.5|0.6|15|266|388; (*GB) gi|350537303|ref|NP_001233777.1| (e_value=8e-168) gamma aminobutyrate transaminase 3, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q84P52|GATP3_SOLLC (e_value=2e-169) Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=6e-122) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc12g006450.1.1 (e_value=8e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:921921-927162 transcript_region:SL2.40ch12:921921..927162- go_terms:GO:0030170 functional_description:"Aminotransferase-like protein (AHRD V1 ***- Q9LIE2_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00039342g0011.1 protein AED:0.31 eAED:0.32 QI:252|0|0.5|1|0|0|2|0|224; (*GB) gi|76160931|gb|ABA40429.1| (e_value=7e-79) unknown [Solanum tuberosum];; (*TAIR) AT3G06040.3 (e_value=5e-43) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr3:1824516-1825076 REVERSE LENGTH=186;; (*ITAG) Solyc09g010030.1.1 (e_value=2e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3451744-3452328 transcript_region:SL2.40ch09:3451744..3452328+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 *-*- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00017667g0013.1 protein AED:0.10 eAED:0.12 QI:0|0.92|0.71|1|0.84|0.85|14|0|1208; (*GB) gi|297845134|ref|XP_002890448.1| (e_value=0.0) calcium-binding EF hand family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9HGL2|YHLA_SCHPO (e_value=4e-16) Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=2 SV=1;; (*TAIR) AT1G21630.1 (e_value=0.0) | Symbols: | Calcium-binding EF hand family protein | chr1:7581457-7587796 FORWARD LENGTH=1218;; (*ITAG) Solyc02g082540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40780785-40792518 transcript_region:SL2.40ch02:40780785..40792518- go_terms:GO:0005515 functional_description:"Actin cytoskeleton-regulatory complex protein pan1 (AHRD V1 *--- PAN1_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type IPR000261 EPS15 homology (EH) "; GO:0005515 NbS00017667g0012.1 protein AED:0.01 eAED:0.01 QI:250|1|1|1|1|1|4|667|447; (*GB) gi|225438452|ref|XP_002277212.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase SRPK2 [Vitis vinifera];; (*SWP) sp|Q45FA5|SRPK_PHYPO (e_value=2e-102) Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1;; (*TAIR) AT2G17530.3 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:7626518-7628624 FORWARD LENGTH=440;; (*ITAG) Solyc02g082550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40801304-40803953 transcript_region:SL2.40ch02:40801304..40803953+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MD00_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00017667g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|225438450|ref|XP_002277064.1| (e_value=0.0) PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|Q10074|AVT3_SCHPO (e_value=1e-26) Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1;; (*TAIR) AT4G38250.1 (e_value=4e-161) | Symbols: | Transmembrane amino acid transporter family protein | chr4:17935533-17936843 FORWARD LENGTH=436;; (*ITAG) Solyc02g082510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40776670-40777947 transcript_region:SL2.40ch02:40776670..40777947+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00017667g0004.1 protein AED:0.17 eAED:0.20 QI:0|0|0|1|1|1|2|0|416; (*GB) gi|225438450|ref|XP_002277064.1| (e_value=0.0) PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera];; (*SWP) sp|Q495N2|S36A3_HUMAN (e_value=1e-26) Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2;; (*TAIR) AT2G42005.1 (e_value=5e-163) | Symbols: | Transmembrane amino acid transporter family protein | chr2:17531323-17532564 REVERSE LENGTH=413;; (*ITAG) Solyc02g082510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40776670-40777947 transcript_region:SL2.40ch02:40776670..40777947+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00033779g0002.1 protein AED:0.19 eAED:0.19 QI:0|1|0.5|1|1|1|4|0|343; (*GB) gi|350535805|ref|NP_001234470.1| (e_value=0.0) xyloglucan endotransglucosylase-hydrolase XTH5 precursor [Solanum lycopersicum];; (*SWP) sp|Q38908|XTH30_ARATH (e_value=1e-148) Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2;; (*TAIR) AT1G32170.1 (e_value=9e-150) | Symbols: XTR4, XTH30 | xyloglucan endotransglucosylase/hydrolase 30 | chr1:11575434-11577776 FORWARD LENGTH=343;; (*ITAG) Solyc01g081060.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72898947-72902179 transcript_region:SL2.40ch01:72898947..72902179+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 14 (AHRD V1 **** C0IRH3_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00020123g0001.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|116 NbS00021656g0004.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|0.33|0.25|4|0|283; (*GB) gi|21389174|gb|AAM50521.1|AF510215_1 (e_value=4e-124) nam-like protein 18 [Petunia x hybrida];; (*SWP) sp|Q9FLJ2|NC100_ARATH (e_value=7e-80) NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1;; (*TAIR) AT5G61430.1 (e_value=5e-81) | Symbols: ANAC100, ATNAC5, NAC100 | NAC domain containing protein 100 | chr5:24701328-24702553 REVERSE LENGTH=336;; (*ITAG) Solyc03g115850.2.1 (e_value=1e-122) genomic_reference:SL2.40ch03 gene_region:59503502-59505060 transcript_region:SL2.40ch03:59503502..59505060- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9I557_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00057610g0003.1 protein AED:0.29 eAED:0.29 QI:0|1|0.85|1|0.5|0.57|7|363|218; (*GB) gi|225424099|ref|XP_002283125.1| (e_value=2e-77) PREDICTED: uncharacterized protein LOC100264466 [Vitis vinifera];; (*TAIR) AT1G68185.1 (e_value=2e-55) | Symbols: | Ubiquitin-like superfamily protein | chr1:25556542-25558173 FORWARD LENGTH=215;; (*ITAG) Solyc03g013030.2.1 (e_value=1e-104) genomic_reference:SL2.40ch03 gene_region:2514545-2518266 transcript_region:SL2.40ch03:2514545..2518266- functional_description:"Small ubiquitin-related modifier (AHRD V1 *-*- C1BRP8_9MAXI)"; NbS00051898g0009.1 protein AED:0.13 eAED:0.21 QI:48|0.6|0.66|1|0.6|0.83|6|0|213; (*GB) gi|146216710|gb|ABQ10557.1| (e_value=7e-60) leucine-rich repeat protein [Nicotiana tabacum];; (*SWP) sp|Q94AG2|SERK1_ARATH (e_value=8e-36) Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2;; (*TAIR) AT1G71830.1 (e_value=6e-37) | Symbols: SERK1, ATSERK1 | somatic embryogenesis receptor-like kinase 1 | chr1:27018575-27021842 FORWARD LENGTH=625;; (*ITAG) Solyc01g009810.2.1 (e_value=1e-64) genomic_reference:SL2.40ch01 gene_region:4251976-4255077 transcript_region:SL2.40ch01:4251976..4255077+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00051898g0010.1 protein AED:0.20 eAED:0.24 QI:51|0.75|0.4|1|0|0.2|5|0|379; (*GB) gi|224052847|ref|XP_002297610.1| (e_value=8e-61) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13190.1 (e_value=7e-43) | Symbols: | CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:4204987-4206205 REVERSE LENGTH=134;; (*ITAG) Solyc05g024020.1.1 (e_value=8e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:30241291-30242064 transcript_region:SL2.40ch05:30241291..30242064+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023243g0017.1 protein AED:0.03 eAED:0.03 QI:85|1|0.75|1|0.66|1|4|0|482; (*GB) gi|359472749|ref|XP_002276440.2| (e_value=0.0) PREDICTED: probable glycosyltransferase At5g11130-like [Vitis vinifera];; (*SWP) sp|Q9LFP3|GLYT4_ARATH (e_value=1e-19) Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana GN=At5g11120/At5g11130 PE=3 SV=2;; (*TAIR) AT2G35100.1 (e_value=0.0) | Symbols: ARAD1 | Exostosin family protein | chr2:14793993-14795564 REVERSE LENGTH=447;; (*ITAG) Solyc02g068690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33206047-33209607 transcript_region:SL2.40ch02:33206047..33209607- go_terms:GO:0016757 functional_description:"Exostosin family protein-like protein (AHRD V1 **-- Q84SM6_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016757 NbS00023243g0003.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|80; (*GB) gi|293337351|gb|ADE42971.1| (e_value=6e-21) putative 40S ribosomal protein S25-1 [Gardenia jasminoides];; (*SWP) sp|P46301|RS25_SOLLC (e_value=4e-22) 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1;; (*TAIR) AT2G16360.1 (e_value=2e-21) | Symbols: | Ribosomal protein S25 family protein | chr2:7076713-7077366 REVERSE LENGTH=125;; (*ITAG) Solyc10g052660.1.1 (e_value=3e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:48687984-48689698 transcript_region:SL2.40ch10:48687984..48689698- go_terms:GO:0003735 functional_description:"40S ribosomal protein S25-1 (AHRD V1 ***- B4FXK8_MAIZE); contains Interpro domain(s) IPR004977 Ribosomal protein S25 "; GO:0003735 NbS00023243g0019.1 protein AED:0.17 eAED:0.17 QI:69|0.8|0.83|1|0.8|0.83|6|394|183; (*GB) gi|357475225|ref|XP_003607898.1| (e_value=7e-70) 14 kDa zinc-binding protein [Medicago truncatula];; (*SWP) sp|P42856|ZB14_MAIZE (e_value=8e-59) 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1;; (*TAIR) AT1G31160.1 (e_value=9e-67) | Symbols: HINT 2 | HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 | chr1:11122880-11124106 REVERSE LENGTH=187;; (*ITAG) Solyc02g068700.2.1 (e_value=2e-93) genomic_reference:SL2.40ch02 gene_region:33210914-33214494 transcript_region:SL2.40ch02:33210914..33214494- go_terms:GO:0042803 functional_description:"Histidine triad (HIT) protein (AHRD V1 **-- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein "; GO:0042803 NbS00023243g0021.1 protein AED:0.68 eAED:0.94 QI:0|0|0|0.75|1|1|4|0|174 NbS00023243g0005.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|437; (*GB) gi|27085288|gb|AAN85435.1| (e_value=8e-124) acyltransferase 1 [Capsicum chinense];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=5e-52) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=3e-69) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc06g051320.2.1 (e_value=1e-92) genomic_reference:SL2.40ch06 gene_region:31052523-31054682 transcript_region:SL2.40ch06:31052523..31054682+ go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00023243g0022.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.42|1|0.66|0.42|7|0|666; (*GB) gi|224136692|ref|XP_002322392.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=2e-18) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G18670.1 (e_value=3e-121) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc02g068670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33196894-33199149 transcript_region:SL2.40ch02:33196894..33199149+ go_terms:GO:0005515 functional_description:"Ankyrin repeat-containing protein At3g12360 (AHRD V1 **-- Y3236_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00023243g0002.1 protein AED:0.21 eAED:0.65 QI:0|-1|0|1|-1|1|1|0|292; (*GB) gi|224120914|ref|XP_002330857.1| (e_value=5e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT2G27660.1 (e_value=6e-15) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:11798694-11800850 REVERSE LENGTH=718;; (*ITAG) Solyc02g068680.1.1 (e_value=6e-167) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:33202425-33203810 transcript_region:SL2.40ch02:33202425..33203810+ go_terms:GO:0023034,GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 **-- Q9FK70_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0023034,GO:0008270 NbS00019064g0015.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|1|0.5|0.33|3|0|276; (*GB) gi|17644112|gb|AAK95390.1| (e_value=2e-114) ribosomal protein L2 [Solanum lycopersicum];; (*SWP) sp|P92812|RM02_ORYSJ (e_value=8e-49) 60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2;; (*TAIR) AT2G44065.2 (e_value=8e-62) | Symbols: | Ribosomal protein L2 family | chr2:18228860-18230368 FORWARD LENGTH=214;; (*ITAG) Solyc08g075410.2.1 (e_value=3e-117) genomic_reference:SL2.40ch08 gene_region:56714437-56715532 transcript_region:SL2.40ch08:56714437..56715532- go_terms:GO:0032183 functional_description:"50S ribosomal protein L2 (AHRD V1 *-*- D3P934_DEFDS); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0032183 NbS00019064g0012.1 protein AED:0.39 eAED:0.40 QI:0|0.66|0.25|0.75|1|1|4|0|410; (*GB) gi|224129980|ref|XP_002328851.1| (e_value=6e-64) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZ67|Y4919_ARATH (e_value=6e-58) Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana GN=At4g19190 PE=2 SV=1;; (*TAIR) AT4G19190.1 (e_value=5e-59) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:10493323-10495969 FORWARD LENGTH=595;; (*ITAG) Solyc08g075420.2.1 (e_value=2e-84) genomic_reference:SL2.40ch08 gene_region:56716267-56722530 transcript_region:SL2.40ch08:56716267..56722530- functional_description:"Uncharacterized zinc finger CCHC domain-containing protein At4g19190 (AHRD V1 *--- Y4919_ARATH); contains Interpro domain(s) IPR019339 CBF1-interacting co-repressor CIR, N-terminal "; NbS00010223g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|78 NbS00005232g0008.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|0.5|2|135|164; (*GB) gi|351723415|ref|NP_001237022.1| (e_value=4e-62) uncharacterized protein LOC100305555 precursor [Glycine max];; (*SWP) sp|Q39131|LAML_ARATH (e_value=1e-27) Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1;; (*TAIR) AT5G15350.1 (e_value=1e-28) | Symbols: ENODL17, AtENODL17 | early nodulin-like protein 17 | chr5:4985184-4986154 REVERSE LENGTH=172;; (*ITAG) Solyc03g117560.2.1 (e_value=2e-82) genomic_reference:SL2.40ch03 gene_region:60747700-60748710 transcript_region:SL2.40ch03:60747700..60748710- go_terms:GO:0005515 functional_description:"Blue copper-like protein (AHRD V1 **-- B8Y8A0_GOSHI); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00005232g0009.1 protein AED:0.19 eAED:0.19 QI:0|1|0.66|1|1|1|3|0|160; (*GB) gi|350539992|ref|NP_001233835.1| (e_value=5e-61) heat shock protein binding protein [Solanum lycopersicum];; (*SWP) sp|Q9SAG8|DNAJ8_ARATH (e_value=3e-30) Chaperone protein dnaJ 8, chloroplastic OS=Arabidopsis thaliana GN=ATJ8 PE=2 SV=1;; (*TAIR) AT1G80920.1 (e_value=2e-31) | Symbols: J8 | Chaperone DnaJ-domain superfamily protein | chr1:30403863-30404549 REVERSE LENGTH=163;; (*ITAG) Solyc03g117590.2.1 (e_value=9e-64) genomic_reference:SL2.40ch03 gene_region:60755293-60756541 transcript_region:SL2.40ch03:60755293..60756541- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C5UZI2_CLOBO); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00005232g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|173; (*GB) gi|255543335|ref|XP_002512730.1| (e_value=1e-77) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SAH2|PP137_ARATH (e_value=6e-68) Pentatricopeptide repeat-containing protein At1g80880, mitochondrial OS=Arabidopsis thaliana GN=At1g80880 PE=2 SV=1;; (*TAIR) AT1G80880.1 (e_value=4e-69) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30395194-30396921 REVERSE LENGTH=540;; (*ITAG) Solyc03g117570.2.1 (e_value=9e-107) genomic_reference:SL2.40ch03 gene_region:60749224-60751786 transcript_region:SL2.40ch03:60749224..60751786- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005232g0011.1 protein AED:0.47 eAED:0.61 QI:162|0|0.33|0.66|1|1|3|0|120; (*TAIR) AT1G16000.1 (e_value=5e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5494576-5495149 FORWARD LENGTH=86;; (*ITAG) Solyc03g117580.2.1 (e_value=6e-23) genomic_reference:SL2.40ch03 gene_region:60752071-60755357 transcript_region:SL2.40ch03:60752071..60755357+ functional_description:"Os08g0272000 protein (Fragment) (AHRD V1 ***- Q0J6S6_ORYSJ)"; NbS00055669g0001.1 protein AED:0.18 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|161 NbS00055669g0003.1 protein AED:0.70 eAED:0.94 QI:0|0|0|0.6|1|1|5|0|234 NbS00047233g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.66|0|0|3|0|775; (*GB) gi|225435578|ref|XP_002283186.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera];; (*SWP) sp|Q39202|RLK1_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2;; (*TAIR) AT5G60900.1 (e_value=4e-90) | Symbols: RLK1 | receptor-like protein kinase 1 | chr5:24498467-24501494 REVERSE LENGTH=748;; (*ITAG) Solyc01g006530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:1104611-1107028 transcript_region:SL2.40ch01:1104611..1107028+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00055433g0006.1 protein AED:0.23 eAED:0.27 QI:0|0.16|0.14|1|0.5|0.42|7|0|756; (*GB) gi|356508594|ref|XP_003523040.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 43-like [Glycine max];; (*SWP) sp|Q9LM76|PUB44_ARATH (e_value=0.0) U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1;; (*TAIR) AT1G20780.1 (e_value=0.0) | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated E3 ubiquitin ligase 1 | chr1:7217812-7220609 FORWARD LENGTH=801;; (*ITAG) Solyc04g082570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00019320g0012.1 protein AED:0.26 eAED:0.26 QI:29|0.76|0.88|0.94|0.58|0.72|18|367|1235; (*GB) gi|225463846|ref|XP_002265371.1| (e_value=0.0) PREDICTED: acyl-CoA synthetase family member 4 [Vitis vinifera];; (*SWP) sp|F4K1G2|AEE19_ARATH (e_value=0.0) Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana GN=At5g35930 PE=2 SV=1;; (*TAIR) AT5G35930.1 (e_value=0.0) | Symbols: | AMP-dependent synthetase and ligase family protein | chr5:14067197-14074404 REVERSE LENGTH=1040;; (*ITAG) Solyc01g081050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72868817-72892330 transcript_region:SL2.40ch01:72868817..72892330+ go_terms:GO:0008152 functional_description:"D-alanine--poly(phosphoribitol) ligase subunit 1 (AHRD V1 *--- DLTA_BACSU); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0008152 NbS00019320g0006.1 protein AED:0.35 eAED:0.35 QI:69|0.5|0|0.66|1|1|3|0|51; (*GB) gi|147838831|emb|CAN67151.1| (e_value=2e-20) hypothetical protein VITISV_019728 [Vitis vinifera];; (*ITAG) Solyc07g005860.2.1 (e_value=3e-25) genomic_reference:SL2.40ch07 gene_region:677311-682581 transcript_region:SL2.40ch07:677311..682581- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00021921g0002.1 protein AED:0.43 eAED:0.43 QI:48|1|0|1|1|0.5|2|0|57 NbS00026406g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|222; (*GB) gi|283136086|gb|ADB11362.1| (e_value=4e-100) tau class glutathione transferase GSTU34 [Populus trichocarpa];; (*SWP) sp|Q03666|GSTX4_TOBAC (e_value=2e-79) Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G78380.1 (e_value=4e-75) | Symbols: ATGSTU19, GST8, GSTU19 | glutathione S-transferase TAU 19 | chr1:29486659-29487819 REVERSE LENGTH=219;; (*ITAG) Solyc02g081240.1.1 (e_value=3e-123) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39846275-39847221 transcript_region:SL2.40ch02:39846275..39847221+ go_terms:GO:0004364,GO:0043295 functional_description:"Glutathione S-transferase (AHRD V1 **** A1YW90_VITVI); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364,GO:0043295 NbS00016171g0011.1 protein AED:0.24 eAED:0.24 QI:245|0.72|0.75|1|0.63|0.58|12|211|334; (*GB) gi|357478427|ref|XP_003609499.1| (e_value=2e-20) Large proline-rich protein BAT3 [Medicago truncatula];; (*TAIR) AT5G25270.1 (e_value=2e-21) | Symbols: | Ubiquitin-like superfamily protein | chr5:8757577-8762002 REVERSE LENGTH=658;; (*ITAG) Solyc06g036720.2.1 (e_value=9e-17) genomic_reference:SL2.40ch06 gene_region:23955142-23972017 transcript_region:SL2.40ch06:23955142..23972017+ functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; NbS00016171g0012.1 protein AED:0.29 eAED:0.37 QI:0|0|0|0.66|0|0.33|6|0|173 NbS00016171g0013.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.5|0|0.5|2|0|118 NbS00021239g0007.1 protein AED:0.20 eAED:0.20 QI:379|0.91|0.92|1|0.83|0.76|13|655|411; (*GB) gi|255555917|ref|XP_002518994.1| (e_value=1e-176) DNA-binding protein EMBP-1, putative [Ricinus communis];; (*SWP) sp|P23922|HBP1A_WHEAT (e_value=3e-56) Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT2G35530.1 (e_value=1e-138) | Symbols: bZIP16, AtbZIP16 | basic region/leucine zipper transcription factor 16 | chr2:14923280-14926025 REVERSE LENGTH=409;; (*ITAG) Solyc08g005290.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:216588-227934 transcript_region:SL2.40ch08:216588..227934- go_terms:GO:0016563 functional_description:"BZIP transcription factor 3 (AHRD V1 **** Q94KA7_PHAVU); contains Interpro domain(s) IPR012900 G-box binding, MFMR "; GO:0016563 NbS00021239g0010.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|0.75|0.66|0.75|4|0|1135; (*GB) gi|356497399|ref|XP_003517548.1| (e_value=0.0) PREDICTED: cellulose synthase-like protein D3-like [Glycine max];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=0.0) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=0.0) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc08g005280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:210633-215145 transcript_region:SL2.40ch08:210633..215145+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00032371g0010.1 protein AED:0.11 eAED:0.15 QI:0|0|0.33|1|0|0|3|0|982; (*GB) gi|374095607|gb|AEY85031.1| (e_value=0.0) putative pre-mRNA splicing factor [Camellia sinensis];; (*SWP) sp|Q91YR7|PRP6_MOUSE (e_value=0.0) Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1;; (*TAIR) AT4G03430.1 (e_value=0.0) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00032371g0007.1 protein AED:0.20 eAED:0.20 QI:78|1|1|1|1|1|5|491|399; (*GB) gi|21068895|dbj|BAB93004.1| (e_value=0.0) NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum];; (*SWP) sp|Q01289|POR_PEA (e_value=0.0) Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1;; (*TAIR) AT5G54190.1 (e_value=0.0) | Symbols: PORA | protochlorophyllide oxidoreductase A | chr5:21991183-21992773 REVERSE LENGTH=405;; (*ITAG) Solyc07g054210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59889442-59892645 transcript_region:SL2.40ch07:59889442..59892645- go_terms:GO:0046983 functional_description:"Protochlorophyllide reductase like protein (AHRD V1 ***- Q0WVW0_ARATH); contains Interpro domain(s) IPR005979 Light-dependent protochlorophyllide reductase "; GO:0046983 NbS00006355g0012.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|0.87|0.88|9|56|536; (*GB) gi|73487204|gb|AAZ76711.1| (e_value=0.0) calcium-dependent protein kinase 2 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9SIQ7|CDPKO_ARATH (e_value=0.0) Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1;; (*TAIR) AT2G31500.1 (e_value=0.0) | Symbols: CPK24 | calcium-dependent protein kinase 24 | chr2:13414016-13416324 FORWARD LENGTH=582;; (*ITAG) Solyc06g073350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41589654-41593571 transcript_region:SL2.40ch06:41589654..41593571- go_terms:GO:0004689 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 **** Q3YAT0_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004689 NbS00006355g0008.1 protein AED:0.18 eAED:0.32 QI:330|0.5|0.42|0.85|0.66|0.71|7|0|280; (*GB) gi|359495753|ref|XP_002268068.2| (e_value=6e-76) PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Vitis vinifera];; (*SWP) sp|Q8W468|ARI8_ARATH (e_value=4e-65) Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1;; (*TAIR) AT1G65430.1 (e_value=3e-66) | Symbols: ARI8, ATARI8 | IBR domain-containing protein | chr1:24301165-24306159 REVERSE LENGTH=567;; (*ITAG) Solyc06g073340.2.1 (e_value=3e-107) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00006355g0010.1 protein AED:0.32 eAED:0.38 QI:64|1|0.87|1|0.57|0.75|8|0|244; (*GB) gi|1666171|emb|CAA70322.1| (e_value=4e-165) unknown [Nicotiana plumbaginifolia];; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=1e-137) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=1e-138) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc06g073340.2.1 (e_value=2e-158) genomic_reference:SL2.40ch06 gene_region:41581773-41589473 transcript_region:SL2.40ch06:41581773..41589473+ go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00021328g0001.1 protein AED:0.11 eAED:0.14 QI:0|0.33|0|1|1|1|4|0|420; (*GB) gi|225456647|ref|XP_002270812.1| (e_value=6e-139) PREDICTED: probable peptide/nitrate transporter At5g62680 [Vitis vinifera];; (*SWP) sp|Q944G5|PTR44_ARATH (e_value=3e-113) Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3;; (*TAIR) AT3G47960.1 (e_value=2e-114) | Symbols: | Major facilitator superfamily protein | chr3:17698126-17700771 REVERSE LENGTH=636;; (*ITAG) Solyc06g071570.2.1 (e_value=2e-178) genomic_reference:SL2.40ch06 gene_region:40451690-40454562 transcript_region:SL2.40ch06:40451690..40454562+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00021328g0007.1 protein AED:0.25 eAED:0.25 QI:0|1|0.77|1|1|0.88|9|0|426; (*GB) gi|584794|sp|Q08435.1|PMA1_NICPL (e_value=0.0) RecName: Full=Plasma membrane ATPase 1; AltName: Full=Proton pump 1;; (*SWP) sp|Q08435|PMA1_NICPL (e_value=0.0) Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1;; (*TAIR) AT5G62670.1 (e_value=0.0) | Symbols: AHA11, HA11 | H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956;; (*ITAG) Solyc06g071100.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40059389-40066822 transcript_region:SL2.40ch06:40059389..40066822- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"H-ATPase (AHRD V1 ***- Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0016020,GO:0008152,GO:0016021 NbS00058600g0003.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|400; (*GB) gi|224129194|ref|XP_002320524.1| (e_value=7e-147) fasciclin-like arabinogalactan protein [Populus trichocarpa];; (*SWP) sp|Q9SU13|FLA2_ARATH (e_value=5e-138) Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana GN=FLA2 PE=1 SV=1;; (*TAIR) AT4G12730.1 (e_value=4e-139) | Symbols: FLA2 | FASCICLIN-like arabinogalactan 2 | chr4:7491598-7492809 REVERSE LENGTH=403;; (*ITAG) Solyc07g045440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55861244-55862473 transcript_region:SL2.40ch07:55861244..55862473- functional_description:"Fasciclin-like arabinogalactan protein 19 (AHRD V1 ***- A9XTM4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00013256g0018.1 protein AED:0.08 eAED:0.08 QI:266|0.8|0.83|1|0.8|0.66|6|68|480; (*GB) gi|27752361|gb|AAO19451.1| (e_value=1e-135) glucose-6-phosphate/phosphate translocator 2 [Solanum tuberosum];; (*SWP) sp|Q94B38|GPT2_ARATH (e_value=2e-118) Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=2;; (*TAIR) AT1G61800.1 (e_value=1e-119) | Symbols: GPT2, ATGPT2 | glucose-6-phosphate/phosphate translocator 2 | chr1:22824527-22826459 FORWARD LENGTH=388;; (*ITAG) Solyc05g045670.2.1 (e_value=6e-141) genomic_reference:SL2.40ch05 gene_region:56569409-56572667 transcript_region:SL2.40ch05:56569409..56572667+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** Q84Y17_SOLTU); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00013256g0016.1 protein AED:0.17 eAED:0.17 QI:428|0.44|0.2|0.9|0.44|0.3|10|0|871; (*GB) gi|357933577|dbj|BAL15055.1| (e_value=0.0) glutamate receptor 3.2 [Solanum lycopersicum];; (*SWP) sp|Q8GXJ4|GLR34_ARATH (e_value=0.0) Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2;; (*TAIR) AT1G05200.2 (e_value=0.0) | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor 3.4 | chr1:1505642-1509002 FORWARD LENGTH=959;; (*ITAG) Solyc05g045650.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:56534856-56539727 transcript_region:SL2.40ch05:56534856..56539727+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9IAE8_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00013256g0020.1 protein AED:0.20 eAED:0.25 QI:0|0.25|0.2|1|0.25|0.4|5|0|165; (*GB) gi|357116750|ref|XP_003560141.1| (e_value=2e-46) PREDICTED: septum-promoting GTP-binding protein 1-like [Brachypodium distachyon];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=6e-18) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.1 (e_value=1e-41) | Symbols: ATSGP2, SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=291;; (*ITAG) Solyc05g045660.2.1 (e_value=6e-76) genomic_reference:SL2.40ch05 gene_region:56547429-56550136 transcript_region:SL2.40ch05:56547429..56550136+ go_terms:GO:0003924 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- B5X4R4_SALSA); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00013256g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|188; (*GB) gi|61217028|sp|Q8LL11.1|WUS_PETHY (e_value=1e-88) RecName: Full=Protein WUSCHEL; AltName: Full=PhWUS; AltName: Full=Protein TERMINATOR;; (*SWP) sp|Q8LL11|WUS_PETHY (e_value=3e-90) Protein WUSCHEL OS=Petunia hybrida GN=WUS PE=2 SV=1;; (*TAIR) AT2G17950.1 (e_value=7e-40) | Symbols: WUS, PGA6, WUS1 | Homeodomain-like superfamily protein | chr2:7809100-7810671 REVERSE LENGTH=292;; (*ITAG) Solyc02g083950.2.1 (e_value=6e-79) genomic_reference:SL2.40ch02 gene_region:41768119-41769544 transcript_region:SL2.40ch02:41768119..41769544- go_terms:GO:0006355 functional_description:"WUSCHEL-related homeobox-containing protein 4 (AHRD V1 *-*- C0LAL8_9MAGN); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355 NbS00055108g0003.1 protein AED:0.18 eAED:0.18 QI:201|1|1|1|1|1|2|406|133; (*GB) gi|115473643|ref|NP_001060420.1| (e_value=8e-66) Os07g0640100 [Oryza sativa Japonica Group];; (*SWP) sp|Q9LHI0|NDUA6_ARATH (e_value=6e-61) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1;; (*TAIR) AT3G12260.1 (e_value=5e-62) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr3:3909252-3910337 REVERSE LENGTH=133;; (*ITAG) Solyc01g022750.2.1 (e_value=1e-76) genomic_reference:SL2.40ch01 gene_region:32937521-32944195 transcript_region:SL2.40ch01:32937521..32944195- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** B5G1U3_TAEGU); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0008137 NbS00002597g0005.1 protein AED:0.17 eAED:0.19 QI:0|0.5|0.42|1|0.5|0.42|7|0|678; (*GB) gi|224064033|ref|XP_002301358.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GUH1|PUB33_ARATH (e_value=0.0) U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2;; (*TAIR) AT2G45910.1 (e_value=0.0) | Symbols: | U-box domain-containing protein kinase family protein | chr2:18894520-18898212 FORWARD LENGTH=834;; (*ITAG) Solyc01g094660.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77865068-77873889 transcript_region:SL2.40ch01:77865068..77873889+ go_terms:GO:0006468,GO:0000151 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0000151 NbS00005808g0003.1 protein AED:0.11 eAED:0.12 QI:64|0|0.5|1|1|1|2|241|79 NbS00033249g0010.1 protein AED:0.27 eAED:0.29 QI:13|0.5|0.33|1|1|1|3|0|447; (*GB) gi|359491894|ref|XP_002274136.2| (e_value=0.0) PREDICTED: uncharacterized protein At1g76660-like [Vitis vinifera];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=2e-134) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT1G76660.1 (e_value=2e-135) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). | chr1:28769157-28771036 REVERSE LENGTH=431;; (*ITAG) Solyc12g095780.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63245533-63248345 transcript_region:SL2.40ch12:63245533..63248345- functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q6K6Z8_ORYSJ)"; NbS00033249g0009.1 protein AED:0.64 eAED:0.64 QI:0|0.5|0.14|0.57|0.83|0.71|7|0|127; (*GB) gi|255539386|ref|XP_002510758.1| (e_value=2e-75) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P0AF48|YJBQ_ECOLI (e_value=2e-37) UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1;; (*TAIR) AT1G21065.1 (e_value=2e-72) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). | chr1:7374210-7375644 FORWARD LENGTH=217;; (*ITAG) Solyc12g095770.1.1 (e_value=1e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63240062-63244620 transcript_region:SL2.40ch12:63240062..63244620+ functional_description:"YjbQ (AHRD V1 **-- C9SP80_VERA1); contains Interpro domain(s) IPR001602 Uncharacterised protein family UPF0047 "; NbS00001168g0005.1 protein AED:0.13 eAED:0.13 QI:111|1|1|1|0.76|0.78|14|163|579; (*GB) gi|302143772|emb|CBI22633.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q32PL8|CC111_DANRE (e_value=2e-67) Coiled-coil domain-containing protein 111 homolog OS=Danio rerio GN=ccdc111 PE=2 SV=1;; (*TAIR) AT5G52800.3 (e_value=0.0) | Symbols: | DNA primases | chr5:21396053-21399419 FORWARD LENGTH=614;; (*ITAG) Solyc12g044340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44712011-44722472 transcript_region:SL2.40ch12:44712011..44722472- go_terms:GO:0006260 functional_description:"Coiled-coil domain-containing protein 111 (AHRD V1 ***- CC111_MOUSE); contains Interpro domain(s) IPR004340 DNA primase, UL52/UL70 type, Herpesviridae "; GO:0006260 NbS00001285g0007.1 protein AED:0.12 eAED:0.12 QI:63|1|1|1|1|1|2|185|83; (*GB) gi|23466393|tpg|DAA00287.1| (e_value=4e-34) TPA: TPA_exp: putative phytosulfokine peptide precursor [Lycopersicon esculentum];; (*ITAG) Solyc02g092110.2.1 (e_value=7e-37) genomic_reference:SL2.40ch02 gene_region:47901342-47902019 transcript_region:SL2.40ch02:47901342..47902019+ go_terms:GO:0005576 functional_description:"Phytosulfokines 3 (AHRD V1 ***- PSK3_ARATH); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00001285g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|221; (*GB) gi|147825147|emb|CAN62264.1| (e_value=2e-42) hypothetical protein VITISV_018458 [Vitis vinifera];; (*TAIR) AT2G22850.2 (e_value=1e-31) | Symbols: bZIP6 | basic leucine-zipper 6 | chr2:9732601-9733284 REVERSE LENGTH=227;; (*ITAG) Solyc02g092090.1.1 (e_value=1e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47877286-47877930 transcript_region:SL2.40ch02:47877286..47877930- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LE49_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00019512g0002.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|445; (*GB) gi|225453080|ref|XP_002270702.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 5-like [Vitis vinifera];; (*SWP) sp|P48724|IF5_PHAVU (e_value=0.0) Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G77840.1 (e_value=1e-168) | Symbols: | Translation initiation factor IF2/IF5 | chr1:29269087-29270400 FORWARD LENGTH=437;; (*ITAG) Solyc03g034430.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:10670693-10672021 transcript_region:SL2.40ch03:10670693..10672021+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00019512g0005.1 protein AED:0.61 eAED:0.61 QI:23|0.5|0.6|0.8|0.75|0.8|5|0|185; (*GB) gi|255574272|ref|XP_002528050.1| (e_value=1e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G66680.1 (e_value=1e-36) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358;; (*ITAG) Solyc02g091190.2.1 (e_value=3e-44) genomic_reference:SL2.40ch02 gene_region:47152463-47157532 transcript_region:SL2.40ch02:47152463..47157532+ go_terms:GO:0016279 functional_description:"Methyltransferase-like protein 10 (AHRD V1 **-* B5XB96_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0016279 NbS00032605g0005.1 protein AED:0.09 eAED:0.22 QI:0|0|0|1|1|1|2|0|108; (*GB) gi|224073492|ref|XP_002304103.1| (e_value=8e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11970.1 (e_value=6e-13) | Symbols: | Protein of unknown function (DUF3511) | chr5:3863289-3863606 REVERSE LENGTH=105;; (*ITAG) Solyc12g049210.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:46070245-46070568 transcript_region:SL2.40ch12:46070245..46070568- functional_description:"Unknown Protein (AHRD V1)"; NbS00032605g0008.1 protein AED:0.33 eAED:0.34 QI:338|0.69|0.71|1|0.92|0.92|14|416|488; (*GB) gi|359482807|ref|XP_002277513.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=6e-172) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=0.0) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc03g121820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63912455-63918775 transcript_region:SL2.40ch03:63912455..63918775+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00012925g0006.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|0.33|0.5|4|0|994; (*GB) gi|255539416|ref|XP_002510773.1| (e_value=0.0) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q38953|DHX8_ARATH (e_value=0.0) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2;; (*TAIR) AT3G26560.1 (e_value=0.0) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc01g110990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89175985-89179663 transcript_region:SL2.40ch01:89175985..89179663+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00026750g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|67|146; (*GB) gi|255539132|ref|XP_002510631.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G20430.1 (e_value=2e-30) | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7083471-7083821 REVERSE LENGTH=116;; (*ITAG) Solyc12g094480.1.1 (e_value=7e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63040511-63043542 transcript_region:SL2.40ch12:63040511..63043542- functional_description:"Unknown Protein (AHRD V1)"; NbS00004863g0003.1 protein AED:0.35 eAED:0.35 QI:0|1|0.25|1|1|1|4|0|674; (*GB) gi|225430484|ref|XP_002285523.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein NPY1-like isoform 2 [Vitis vinifera];; (*SWP) sp|O64814|NPY4_ARATH (e_value=8e-143) BTB/POZ domain-containing protein NPY4 OS=Arabidopsis thaliana GN=NPY4 PE=2 SV=1;; (*TAIR) AT2G23050.1 (e_value=6e-144) | Symbols: NPY4 | Phototropic-responsive NPH3 family protein | chr2:9810785-9812468 FORWARD LENGTH=481;; (*ITAG) Solyc08g006870.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1416352-1421980 transcript_region:SL2.40ch08:1416352..1421980+ go_terms:GO:0005515,GO:0009416 functional_description:"BZIP domain class transcription factor (AHRD V1 **-- D9ZIQ8_MALDO); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00032375g0006.1 protein AED:0.04 eAED:0.04 QI:230|1|1|1|1|1|8|388|442; (*GB) gi|350539107|ref|NP_001233863.1| (e_value=0.0) dehydroquinate synthase [Solanum lycopersicum];; (*SWP) sp|B8GPV3|AROB_THISH (e_value=5e-148) 3-dehydroquinate synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=aroB PE=3 SV=1;; (*TAIR) AT5G66120.2 (e_value=0.0) | Symbols: | 3-dehydroquinate synthase, putative | chr5:26431516-26433649 REVERSE LENGTH=442;; (*ITAG) Solyc02g083590.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41515715-41520837 transcript_region:SL2.40ch02:41515715..41520837- go_terms:GO:0008797 functional_description:"Dehydroquinate synthase (AHRD V1 ***- Q8RU74_SOLLC); contains Interpro domain(s) IPR016037 3-dehydroquinate synthase AroB, subgroup "; GO:0008797 NbS00032375g0005.1 protein AED:0.27 eAED:0.27 QI:373|0.5|0.57|1|1|1|7|0|169; (*GB) gi|14278856|gb|AAK31299.1| (e_value=3e-42) Rac-like GTPase 1 [Nicotiana tabacum];; (*SWP) sp|Q39435|RAC1_BETVU (e_value=9e-43) Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1;; (*TAIR) AT3G51300.1 (e_value=2e-47) | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | RHO-related protein from plants 1 | chr3:19043197-19044215 FORWARD LENGTH=197;; (*ITAG) Solyc02g083580.2.1 (e_value=5e-50) genomic_reference:SL2.40ch02 gene_region:41510800-41514068 transcript_region:SL2.40ch02:41510800..41514068- go_terms:GO:0003924 functional_description:"Ras-like GTP-binding protein RHO (AHRD V1 **-- RHO_APLCA); contains Interpro domain(s) IPR003578 Ras small GTPase, Rho type "; GO:0003924 NbS00018628g0011.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.5|1|0.66|0.75|4|238|603; (*GB) gi|255547061|ref|XP_002514588.1| (e_value=5e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G03810.4 (e_value=1e-20) | Symbols: | 18S pre-ribosomal assembly protein gar2-related | chr2:1162703-1164286 FORWARD LENGTH=439;; (*ITAG) Solyc04g005290.2.1 (e_value=1e-139) genomic_reference:SL2.40ch04 gene_region:212945-215410 transcript_region:SL2.40ch04:212945..215410- functional_description:"Unknown Protein (AHRD V1)"; NbS00018628g0004.1 protein AED:0.27 eAED:0.27 QI:235|1|1|1|0.5|0.55|9|440|329; (*GB) gi|255547053|ref|XP_002514584.1| (e_value=7e-124) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9CAA4|BIM2_ARATH (e_value=5e-93) Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1;; (*TAIR) AT1G69010.1 (e_value=4e-94) | Symbols: BIM2 | BES1-interacting Myc-like protein 2 | chr1:25941804-25943599 FORWARD LENGTH=311;; (*ITAG) Solyc04g005280.2.1 (e_value=2e-179) genomic_reference:SL2.40ch04 gene_region:205332-212148 transcript_region:SL2.40ch04:205332..212148+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** Q401N4_9LILI); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00044258g0006.1 protein AED:0.39 eAED:0.44 QI:0|1|0.66|1|0|0|3|0|126; (*GB) gi|225445891|ref|XP_002279710.1| (e_value=5e-56) PREDICTED: uncharacterized protein LOC100255296 [Vitis vinifera];; (*TAIR) AT5G58005.2 (e_value=2e-52) | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr5:23482234-23482757 FORWARD LENGTH=116;; (*ITAG) Solyc12g010150.1.1 (e_value=6e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3279633-3281468 transcript_region:SL2.40ch12:3279633..3281468+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044258g0007.1 protein AED:0.05 eAED:0.05 QI:53|0.83|0.85|1|1|1|7|171|387; (*GB) gi|255565001|ref|XP_002523493.1| (e_value=1e-79) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZUG9|BH066_ARATH (e_value=5e-57) Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1;; (*TAIR) AT2G24260.1 (e_value=4e-58) | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-10322177 REVERSE LENGTH=350;; (*ITAG) Solyc12g010170.1.1 (e_value=3e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3285767-3293079 transcript_region:SL2.40ch12:3285767..3293079- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00044258g0005.1 protein AED:0.23 eAED:0.23 QI:182|1|1|1|0.83|0.71|7|294|286; (*GB) gi|225424454|ref|XP_002281633.1| (e_value=9e-136) PREDICTED: anthranilate synthase component II-like [Vitis vinifera];; (*SWP) sp|P48261|TRPG_CYAPA (e_value=2e-70) Anthranilate synthase component II OS=Cyanophora paradoxa GN=trpG PE=3 SV=1;; (*TAIR) AT1G25220.1 (e_value=3e-131) | Symbols: ASB1, TRP4, WEI7 | anthranilate synthase beta subunit 1 | chr1:8837430-8839478 REVERSE LENGTH=276;; (*ITAG) Solyc12g010180.1.1 (e_value=1e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3296799-3307363 transcript_region:SL2.40ch12:3296799..3307363- go_terms:GO:0008152,GO:0006541,GO:0009058,GO:0003824 functional_description:"Anthranilate synthase (AHRD V1 ***- A1KAT4_AZOSB); contains Interpro domain(s) IPR000991 Glutamine amidotransferase class-I, C-terminal "; GO:0008152,GO:0006541,GO:0009058,GO:0003824 NbS00020049g0008.1 protein AED:0.15 eAED:0.15 QI:0|1|0.87|1|0.85|0.87|8|0|462; (*GB) gi|225468648|ref|XP_002268069.1| (e_value=0.0) PREDICTED: lipase [Vitis vinifera];; (*SWP) sp|P04635|LIP_STAHY (e_value=5e-26) Lipase OS=Staphylococcus hyicus GN=lip PE=1 SV=1;; (*TAIR) AT1G10740.4 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:3568343-3570466 REVERSE LENGTH=473;; (*ITAG) Solyc05g005000.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1406-5315 transcript_region:SL2.40ch05:1406..5315- go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** B6UAB9_MAIZE)"; GO:0004806 NbS00046767g0003.1 protein AED:0.32 eAED:0.33 QI:114|1|0.9|1|1|1|10|0|440; (*GB) gi|359479546|ref|XP_002273076.2| (e_value=4e-120) PREDICTED: protein phosphatase 1 regulatory subunit 7-like [Vitis vinifera];; (*SWP) sp|P45969|YNZ9_CAEEL (e_value=1e-13) Uncharacterized protein T09A5.9 OS=Caenorhabditis elegans GN=T09A5.9 PE=2 SV=1;; (*TAIR) AT5G22320.1 (e_value=9e-100) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7388175-7390426 REVERSE LENGTH=452;; (*ITAG) Solyc11g068690.1.1 (e_value=2e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50407358-50412796 transcript_region:SL2.40ch11:50407358..50412796+ go_terms:GO:0005515 functional_description:"Lrr, resistance protein fragment"; GO:0005515 NbS00001879g0004.1 protein AED:0.16 eAED:0.16 QI:245|1|1|1|0.5|0.71|7|370|691; (*GB) gi|297736602|emb|CBI25473.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q09690|POM1_SCHPO (e_value=2e-57) Dual specificity protein kinase pom1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pom1 PE=1 SV=1;; (*TAIR) AT2G40120.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr2:16755137-16757258 REVERSE LENGTH=570;; (*ITAG) Solyc06g051510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31468396-31473115 transcript_region:SL2.40ch06:31468396..31473115+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022581g0005.1 protein AED:0.19 eAED:0.20 QI:155|0.88|0.8|1|0.88|0.8|10|0|554; (*GB) gi|296089796|emb|CBI39615.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94AC1|STR6_ARATH (e_value=0.0) Rhodanese-like domain-containing protein 6 OS=Arabidopsis thaliana GN=STR6 PE=2 SV=1;; (*TAIR) AT1G09280.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink). | chr1:2998209-3001253 REVERSE LENGTH=581;; (*ITAG) Solyc01g100730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82448519-82456371 transcript_region:SL2.40ch01:82448519..82456371+ functional_description:"UPF0176 protein yceA (AHRD V1 *--- YCEA_ECOL6); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00029353g0017.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0|1|0|0.25|4|0|305; (*GB) gi|296080969|emb|CBI18601.3| (e_value=5e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G54890.1 (e_value=1e-112) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr1:20463107-20464407 FORWARD LENGTH=347;; (*ITAG) Solyc02g078930.1.1 (e_value=7e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38128755-38129867 transcript_region:SL2.40ch02:38128755..38129867- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 ***- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00029353g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|124359796|gb|ABD33026.2| (e_value=5e-21) Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=1e-14) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=1e-15) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc04g047790.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:36844973-36845329 transcript_region:SL2.40ch04:36844973..36845329+ functional_description:"FAR1 Zinc finger SWIM-type Iron hydrogenase (AHRD V1 **-- Q1SWK4_MEDTR)"; NbS00029353g0016.1 protein AED:0.05 eAED:0.05 QI:173|0.75|1|1|1|1|5|130|289; (*GB) gi|76160992|gb|ABA40459.1| (e_value=0.0) NADPH quinone oxidoreductase-like protein [Solanum tuberosum];; (*SWP) sp|Q53FA7|QORX_HUMAN (e_value=3e-66) Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2;; (*TAIR) AT4G21580.3 (e_value=9e-150) | Symbols: | oxidoreductase, zinc-binding dehydrogenase family protein | chr4:11475822-11477514 FORWARD LENGTH=319;; (*ITAG) Solyc02g078940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38131278-38135602 transcript_region:SL2.40ch02:38131278..38135602+ go_terms:GO:0070402 functional_description:"Zinc-binding dehydrogenase superfamily (Quinone oxidoreductase NADPH dependent) (AHRD V1 **-* Q1LPW6_RALME); contains Interpro domain(s) IPR014189 Quinone oxidoreductase putative, PIG3 "; GO:0070402 NbS00029353g0015.1 protein AED:0.30 eAED:0.30 QI:0|1|0|1|1|0.5|2|0|454; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=0.0) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*SWP) sp|P52409|E13B_WHEAT (e_value=1e-134) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT3G55430.1 (e_value=2e-164) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449;; (*ITAG) Solyc07g005330.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:261349-264657 transcript_region:SL2.40ch07:261349..264657- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00029353g0005.1 protein AED:0.45 eAED:0.51 QI:0|0|0|0.25|1|1|8|0|566; (*GB) gi|113205244|gb|AAT39318.2| (e_value=8e-31) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=4e-61) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00031982g0005.1 protein AED:0.01 eAED:0.07 QI:0|0.25|0.2|1|0.5|0.8|5|0|659; (*GB) gi|356569215|ref|XP_003552800.1| (e_value=8e-88) PREDICTED: protein terminal ear1-like [Glycine max];; (*SWP) sp|A2WY46|EAR1_ORYSI (e_value=1e-79) Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1;; (*TAIR) AT3G26120.1 (e_value=3e-74) | Symbols: TEL1 | terminal EAR1-like 1 | chr3:9546398-9549186 FORWARD LENGTH=615;; (*ITAG) Solyc05g013930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:7385997-7388876 transcript_region:SL2.40ch05:7385997..7388876- go_terms:GO:0003723 functional_description:"MEI2-like RNA binding protein (AHRD V1 *--* Q64M78_ORYSJ); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00010981g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.66|1|1|1|6|410|511; (*GB) gi|225423929|ref|XP_002278978.1| (e_value=0.0) PREDICTED: aluminum-activated malate transporter 4 [Vitis vinifera];; (*SWP) sp|Q9LS46|ALMT9_ARATH (e_value=3e-156) Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1;; (*TAIR) AT3G18440.1 (e_value=2e-157) | Symbols: AtALMT9, ALMT9 | aluminum-activated malate transporter 9 | chr3:6328181-6330652 FORWARD LENGTH=598;; (*ITAG) Solyc03g096820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52622191-52628259 transcript_region:SL2.40ch03:52622191..52628259- go_terms:GO:0005253 functional_description:"Aluminum-activated malate transporter-like (AHRD V1 *--- Q5Z6M4_ORYSJ); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0005253 NbS00010981g0009.1 protein AED:0.11 eAED:0.11 QI:414|1|1|1|0|0|4|175|124; (*GB) gi|255557929|ref|XP_002519993.1| (e_value=2e-52) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g072930.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:41344913-41346744 transcript_region:SL2.40ch06:41344913..41346744+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010981g0007.1 protein AED:0.29 eAED:0.30 QI:0|0|0|0.4|1|1|5|0|158; (*GB) gi|255557921|ref|XP_002519989.1| (e_value=4e-12) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g072940.1.1 (e_value=7e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:41350630-41352642 transcript_region:SL2.40ch06:41350630..41352642+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008546 Protein of unknown function DUF828, plant "; NbS00010981g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|119 NbS00039533g0011.1 protein AED:0.05 eAED:0.05 QI:85|1|1|1|0.8|0.83|6|583|775; (*GB) gi|371917286|dbj|BAL44719.1| (e_value=0.0) SlArf/Xyl4 [Solanum lycopersicum];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=0.0) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072850.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57401404-57407824 transcript_region:SL2.40ch04:57401404..57407824- go_terms:GO:0046556,GO:0009044 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0046556,GO:0009044 NbS00039533g0001.1 protein AED:0.16 eAED:0.18 QI:0|0.42|0.37|1|1|1|8|0|589; (*GB) gi|371917284|dbj|BAL44718.1| (e_value=0.0) SlArf/Xyl3 [Solanum lycopersicum];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=4e-132) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=3e-133) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57410087-57414435 transcript_region:SL2.40ch04:57410087..57414435- go_terms:GO:0009044 functional_description:"Beta-D-xylosidase (AHRD V1 **** Q8W011_HORVU); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00028958g0004.1 protein AED:0.25 eAED:0.29 QI:210|0.72|0.66|1|0.27|0.5|12|0|561; (*GB) gi|255544910|ref|XP_002513516.1| (e_value=0.0) poly(p)/ATP NAD kinase, putative [Ricinus communis];; (*SWP) sp|Q56YN3|NADK1_ARATH (e_value=0.0) NAD(H) kinase 1 OS=Arabidopsis thaliana GN=NADK1 PE=1 SV=2;; (*TAIR) AT3G21070.2 (e_value=0.0) | Symbols: NADK1 | NAD kinase 1 | chr3:7380434-7383874 REVERSE LENGTH=524;; (*ITAG) Solyc01g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2656473-2664287 transcript_region:SL2.40ch01:2656473..2664287- go_terms:GO:0042736,GO:0005516,GO:0003951 functional_description:"NAD kinase 1 (AHRD V1 **** B6SWV6_MAIZE); contains Interpro domain(s) IPR002504 ATP-NAD/AcoX kinase "; GO:0042736,GO:0005516,GO:0003951 NbS00048158g0015.1 protein AED:0.01 eAED:0.01 QI:53|1|1|1|0|0|3|357|199; (*GB) gi|318136930|gb|ADV41673.1| (e_value=1e-111) endo-xyloglucan transferase [Nicotiana tabacum];; (*SWP) sp|P24806|XTH24_ARATH (e_value=4e-77) Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2;; (*TAIR) AT4G30270.1 (e_value=3e-78) | Symbols: MERI5B, MERI-5, XTH24, SEN4 | xyloglucan endotransglucosylase/hydrolase 24 | chr4:14819445-14820448 REVERSE LENGTH=269;; (*ITAG) Solyc07g006860.2.1 (e_value=1e-102) genomic_reference:SL2.40ch07 gene_region:1717942-1719773 transcript_region:SL2.40ch07:1717942..1719773+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 3 (AHRD V1 **** Q06BI4_CUCME); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00048158g0018.1 protein AED:0.07 eAED:0.07 QI:143|0.5|0.6|1|0.25|0.4|5|181|298; (*GB) gi|359484996|ref|XP_002273742.2| (e_value=1e-94) PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23-like [Vitis vinifera];; (*SWP) sp|Q38907|XTH25_ARATH (e_value=3e-89) Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2;; (*TAIR) AT5G57550.1 (e_value=2e-90) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284;; (*ITAG) Solyc07g006850.1.1 (e_value=5e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1712267-1716538 transcript_region:SL2.40ch07:1712267..1716538+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 3 (AHRD V1 **** Q06BI4_CUCME); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00048158g0002.1 protein AED:0.16 eAED:0.16 QI:219|1|0.5|1|0|1|2|0|180; (*GB) gi|297737162|emb|CBI26363.3| (e_value=3e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|P46279|RPB7_SOYBN (e_value=1e-20) DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G14660.1 (e_value=6e-95) | Symbols: NRPE7 | RNA polymerase Rpb7-like, N-terminal domain | chr4:8406500-8407036 REVERSE LENGTH=178;; (*ITAG) Solyc03g118380.1.1 (e_value=3e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:61325558-61326031 transcript_region:SL2.40ch03:61325558..61326031- go_terms:GO:0003899 functional_description:"DNA-directed RNA polymerase II subunit (AHRD V1 **** A8N5F1_COPC7); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; GO:0003899 NbS00048158g0017.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.25|1|1|4|0|205; (*GB) gi|224054978|ref|XP_002298396.1| (e_value=3e-45) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q53NF7|NAC71_ORYSJ (e_value=4e-41) NAC domain-containing protein 71 OS=Oryza sativa subsp. japonica GN=NAC71 PE=2 SV=1;; (*TAIR) AT1G61110.1 (e_value=6e-41) | Symbols: anac025, NAC025 | NAC domain containing protein 25 | chr1:22516730-22518055 FORWARD LENGTH=323;; (*ITAG) Solyc07g006840.1.1 (e_value=7e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1707455-1710527 transcript_region:SL2.40ch07:1707455..1710527+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9H255_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00048158g0020.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0|0|3|0|271; (*GB) gi|22947852|gb|AAN07898.1| (e_value=5e-128) xyloglucan endotransglycosylase [Malus x domestica];; (*SWP) sp|Q38907|XTH25_ARATH (e_value=2e-124) Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2;; (*TAIR) AT5G57550.1 (e_value=2e-125) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284;; (*ITAG) Solyc07g006870.2.1 (e_value=3e-142) genomic_reference:SL2.40ch07 gene_region:1722228-1724125 transcript_region:SL2.40ch07:1722228..1724125+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 8 (AHRD V1 **** C0IRI1_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00041542g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|1|1|2|0|834; (*GB) gi|224054892|ref|XP_002298383.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=0.0) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=0.0) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00050026g0004.1 protein AED:0.12 eAED:0.12 QI:175|1|1|1|0.5|0.66|3|433|220; (*GB) gi|359479884|ref|XP_003632370.1| (e_value=2e-47) PREDICTED: cyclin-dependent kinase inhibitor 3-like [Vitis vinifera];; (*SWP) sp|Q9FKB5|KRP3_ARATH (e_value=2e-41) Cyclin-dependent kinase inhibitor 3 OS=Arabidopsis thaliana GN=KRP3 PE=1 SV=1;; (*TAIR) AT5G48820.1 (e_value=2e-42) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222;; (*ITAG) Solyc09g061280.2.1 (e_value=1e-50) genomic_reference:SL2.40ch09 gene_region:54128553-54131207 transcript_region:SL2.40ch09:54128553..54131207- go_terms:GO:0030332 functional_description:"Cyclin dependent kinase inhibitor (AHRD V1 **** Q5PXG5_EUPES); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0030332 NbS00050026g0007.1 protein AED:0.30 eAED:0.30 QI:159|1|1|1|0.5|0.6|5|279|175; (*GB) gi|224069774|ref|XP_002303036.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT3G24820.1 (e_value=3e-45) | Symbols: | BSD domain-containing protein | chr3:9062717-9064366 REVERSE LENGTH=186;; (*ITAG) Solyc09g061270.2.1 (e_value=1e-86) genomic_reference:SL2.40ch09 gene_region:54105916-54108863 transcript_region:SL2.40ch09:54105916..54108863+ functional_description:"BSD domain-containing protein (AHRD V1 ***- D7L5T3_ARALY); contains Interpro domain(s) IPR005607 BSD "; NbS00019949g0006.1 protein AED:0.24 eAED:0.30 QI:227|0.62|0.55|0.88|0.5|0.44|9|0|497; (*GB) gi|225434688|ref|XP_002279865.1| (e_value=0.0) PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q66GI9|ANTR4_ARATH (e_value=0.0) Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1;; (*TAIR) AT3G46980.3 (e_value=0.0) | Symbols: PHT4;3 | phosphate transporter 4;3 | chr3:17307294-17309899 REVERSE LENGTH=534;; (*ITAG) Solyc09g031700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23556457-23568316 transcript_region:SL2.40ch09:23556457..23568316- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B6VRT1_LYMST); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00024332g0007.1 protein AED:0.16 eAED:0.16 QI:606|1|1|1|0.94|0.94|19|1924|846; (*GB) gi|385203117|gb|ADO34790.3| (e_value=0.0) beta-galactosidase STBG5 [Solanum lycopersicum];; (*SWP) sp|Q9SCV4|BGAL8_ARATH (e_value=0.0) Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2;; (*TAIR) AT2G28470.1 (e_value=0.0) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173164 REVERSE LENGTH=852;; (*ITAG) Solyc11g069270.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50983703-50990234 transcript_region:SL2.40ch11:50983703..50990234+ go_terms:GO:0005529,GO:0005975 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9LLT0_SOLLC); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005529,GO:0005975 NbS00029393g0012.1 protein AED:0.08 eAED:0.08 QI:319|0.42|0.37|1|1|1|8|307|444; (*GB) gi|12643757|sp|Q40460.1|RCA1_TOBAC (e_value=0.0) RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1; Flags: Precursor;; (*SWP) sp|Q40460|RCA1_TOBAC (e_value=0.0) Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT2G39730.1 (e_value=0.0) | Symbols: RCA | rubisco activase | chr2:16570951-16573345 REVERSE LENGTH=474;; (*ITAG) Solyc09g011080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:4413327-4416467 transcript_region:SL2.40ch09:4413327..4416467- go_terms:GO:0046863 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 **** Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0046863 NbS00029393g0011.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.5|2|0|672; (*GB) gi|356567976|ref|XP_003552190.1| (e_value=0.0) PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc09g011070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4400701-4402746 transcript_region:SL2.40ch09:4400701..4402746- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00029393g0102.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|669 NbS00004706g0017.1 protein AED:0.19 eAED:0.22 QI:0|0.5|0.2|1|0|0.4|5|322|319; (*GB) gi|359491429|ref|XP_002275631.2| (e_value=2e-56) PREDICTED: uncharacterized protein LOC100250709 [Vitis vinifera];; (*SWP) sp|Q9M9A5|PCR6_ARATH (e_value=2e-46) Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana GN=PCR6 PE=2 SV=1;; (*TAIR) AT1G49030.1 (e_value=2e-47) | Symbols: | PLAC8 family protein | chr1:18136794-18137846 FORWARD LENGTH=224;; (*ITAG) Solyc03g119660.1.1 (e_value=2e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62278770-62280401 transcript_region:SL2.40ch03:62278770..62280401- functional_description:"Cell number regulator 1 (AHRD V1 *--- B6TZ45_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00004706g0018.1 protein AED:0.06 eAED:0.10 QI:16|1|0|1|1|1|2|0|122; (*GB) gi|76160976|gb|ABA40451.1| (e_value=7e-79) unknown [Solanum tuberosum];; (*TAIR) AT4G29480.1 (e_value=6e-72) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:14486265-14487257 REVERSE LENGTH=122;; (*ITAG) Solyc07g026770.2.1 (e_value=1e-81) genomic_reference:SL2.40ch07 gene_region:31132623-31137555 transcript_region:SL2.40ch07:31132623..31137555- go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- D7MFB8_ARALY); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00004706g0021.1 protein AED:0.11 eAED:0.11 QI:217|0.89|0.86|1|0.78|0.86|29|360|1190; (*GB) gi|225455886|ref|XP_002275529.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254135 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5VZ89|DEN4C_HUMAN (e_value=3e-31) DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2;; (*TAIR) AT1G49040.1 (e_value=0.0) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18139419-18148826 REVERSE LENGTH=1187;; (*ITAG) Solyc03g119650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00004706g0011.1 protein AED:0.17 eAED:0.18 QI:389|0.81|0.76|0.94|0.87|0.88|17|0|519; (*GB) gi|255541800|ref|XP_002511964.1| (e_value=0.0) Protein CASP, putative [Ricinus communis];; (*SWP) sp|Q9LS42|CASP_ARATH (e_value=0.0) Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2;; (*TAIR) AT3G18480.1 (e_value=0.0) | Symbols: AtCASP, CASP | CCAAT-displacement protein alternatively spliced product | chr3:6336924-6341596 FORWARD LENGTH=689;; (*ITAG) Solyc06g069210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39360592-39372973 transcript_region:SL2.40ch06:39360592..39372973+ go_terms:GO:0003677,GO:0003682,GO:0016564 functional_description:"CASP-like protein (AHRD V1 ***- D0NFX2_PHYIN); contains Interpro domain(s) IPR012955 CASP, C-terminal "; GO:0003677,GO:0003682,GO:0016564 NbS00004706g0016.1 protein AED:0.45 eAED:0.74 QI:0|0|0|1|0|0|2|0|68 NbS00022156g0007.1 protein AED:0.15 eAED:0.16 QI:0|0.77|0.6|0.9|0.66|0.7|10|0|553; (*GB) gi|225444565|ref|XP_002277136.1| (e_value=0.0) PREDICTED: dedicator of cytokinesis protein 11 [Vitis vinifera];; (*TAIR) AT4G16340.1 (e_value=0.0) | Symbols: SPK1 | guanyl-nucleotide exchange factors;GTPase binding;GTP binding | chr4:9228773-9241060 REVERSE LENGTH=1830;; (*ITAG) Solyc08g016070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:6538324-6552533 transcript_region:SL2.40ch08:6538324..6552533- functional_description:"Dedicator of cytokinesis 11 (AHRD V1 *-*- A2AF67_MOUSE)"; NbS00028173g0002.1 protein AED:0.36 eAED:0.67 QI:0|0|0|0.75|1|1|4|0|184; (*GB) gi|255579339|ref|XP_002530514.1| (e_value=7e-61) IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis];; (*SWP) sp|Q8H3C9|ILL7_ORYSJ (e_value=7e-59) IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=1e-50) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc06g054410.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:33677809-33682268 transcript_region:SL2.40ch06:33677809..33682268- go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 **** B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00028173g0012.1 protein AED:0.31 eAED:0.31 QI:18|0.33|0.25|0.5|0.33|0.5|4|0|103 NbS00028173g0004.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|145; (*GB) gi|132861|sp|P21434.1|RK2_NICDE (e_value=5e-24) RecName: Full=50S ribosomal protein L2, chloroplastic;; (*SWP) sp|P21434|RK2_NICDE (e_value=1e-25) 50S ribosomal protein L2, chloroplastic OS=Nicotiana debneyi GN=rpl2 PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=6e-24) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00005957g0013.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0.33|0.25|4|0|539; (*GB) gi|356572750|ref|XP_003554529.1| (e_value=0.0) PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max];; (*SWP) sp|Q9SRX4|PME7_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1;; (*TAIR) AT1G02810.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr1:618284-620333 FORWARD LENGTH=579;; (*ITAG) Solyc09g075330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62540915-62542915 transcript_region:SL2.40ch09:62540915..62542915- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9I9P7_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00005957g0012.1 protein AED:0.05 eAED:0.05 QI:0|1|0|1|1|1|2|0|493; (*GB) gi|255564232|ref|XP_002523113.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|O81415|PME39_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1;; (*TAIR) AT4G02300.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1009366-1013034 REVERSE LENGTH=532;; (*ITAG) Solyc06g009190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00052991g0009.1 protein AED:0.13 eAED:0.13 QI:186|1|1|1|0.75|1|5|456|190; (*GB) gi|62183959|gb|AAX73300.1| (e_value=2e-117) putative pollen specific LIM domain-containing protein [Solanum lycopersicum];; (*SWP) sp|P29675|SF3_HELAN (e_value=6e-86) Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1;; (*TAIR) AT1G10200.1 (e_value=3e-90) | Symbols: WLIM1 | GATA type zinc finger transcription factor family protein | chr1:3346677-3347763 REVERSE LENGTH=190;; (*ITAG) Solyc03g114000.2.1 (e_value=5e-129) genomic_reference:SL2.40ch03 gene_region:58102456-58104701 transcript_region:SL2.40ch03:58102456..58104701+ go_terms:GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q306K1_BRANA); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0042802 NbS00052991g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|447; (*GB) gi|359491264|ref|XP_002280276.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82380|PP175_ARATH (e_value=1e-105) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=8e-107) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc03g114010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:58105201-58106865 transcript_region:SL2.40ch03:58105201..58106865+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00052991g0008.1 protein AED:0.12 eAED:0.12 QI:184|1|1|1|1|1|3|456|190; (*GB) gi|62733643|gb|AAX95759.1| (e_value=2e-50) T10O24.15, related [Solanum lycopersicum];; (*TAIR) AT1G60010.1 (e_value=4e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:22095660-22096434 REVERSE LENGTH=173;; (*ITAG) Solyc03g114020.2.1 (e_value=3e-87) genomic_reference:SL2.40ch03 gene_region:58111867-58113093 transcript_region:SL2.40ch03:58111867..58113093- functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00052178g0003.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|1|1|2|0|81 NbS00052178g0006.1 protein AED:0.09 eAED:0.09 QI:43|1|0.90|1|0.6|0.63|11|191|674; (*GB) gi|359487571|ref|XP_002276987.2| (e_value=0.0) PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q93ZW0|G6PD4_ARATH (e_value=0.0) Glucose-6-phosphate 1-dehydrogenase 4, chloroplastic OS=Arabidopsis thaliana GN=At1g09420 PE=2 SV=1;; (*TAIR) AT1G09420.1 (e_value=0.0) | Symbols: G6PD4 | glucose-6-phosphate dehydrogenase 4 | chr1:3038640-3041715 REVERSE LENGTH=625;; (*ITAG) Solyc01g100960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82597821-82604294 transcript_region:SL2.40ch01:82597821..82604294- go_terms:GO:0008152,GO:0055114 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 ***- B9RFN8_RICCO); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00034603g0004.1 protein AED:0.25 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|155; (*ITAG) Solyc00g013190.1.1 (e_value=2e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10692250-10692603 transcript_region:SL2.40ch00:10692250..10692603- functional_description:"Unknown Protein (AHRD V1)"; NbS00034603g0008.1 protein AED:0.14 eAED:0.14 QI:142|1|1|1|1|1|2|435|521; (*GB) gi|11386827|sp|Q40152.1|HSF8_SOLLC (e_value=0.0) RecName: Full=Heat shock factor protein HSF8; AltName: Full=Heat shock transcription factor 8; Short=HSTF 8; AltName: Full=Heat stress transcription factor;; (*SWP) sp|Q40152|HSF8_SOLLC (e_value=0.0) Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1;; (*TAIR) AT1G32330.1 (e_value=2e-126) | Symbols: ATHSFA1D, HSFA1D | heat shock transcription factor A1D | chr1:11657265-11660234 REVERSE LENGTH=485;; (*ITAG) Solyc08g076590.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57710679-57714096 transcript_region:SL2.40ch08:57710679..57714096- go_terms:GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00034603g0205.1 protein AED:0.07 eAED:0.07 QI:55|0.83|1|1|0.66|0.85|7|461|274 NbS00027428g0016.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.5|0.66|0.8|0.83|6|61|205; (*GB) gi|255571255|ref|XP_002526577.1| (e_value=7e-113) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G65900.1 (e_value=5e-100) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to 306 proteins in 119 species: Archae - 19; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24516023-24518325 REVERSE LENGTH=408;; (*ITAG) Solyc02g081270.2.1 (e_value=1e-127) genomic_reference:SL2.40ch02 gene_region:39877970-39887403 transcript_region:SL2.40ch02:39877970..39887403+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MWW7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00027428g0011.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|1|1|2|0|723; (*GB) gi|359475106|ref|XP_003631587.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera];; (*SWP) sp|P93008|RH21_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1;; (*TAIR) AT2G33730.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:14265679-14267880 REVERSE LENGTH=733;; (*ITAG) Solyc02g068190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32786706-32788694 transcript_region:SL2.40ch02:32786706..32788694+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** B7S8F6_9HYME); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00027428g0013.1 protein AED:0.19 eAED:0.20 QI:0|0.92|0.85|1|1|0.92|14|0|893; (*GB) gi|297738137|emb|CBI27338.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O24301|SUS2_PEA (e_value=0.0) Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1;; (*TAIR) AT1G73370.1 (e_value=0.0) | Symbols: SUS6, ATSUS6 | sucrose synthase 6 | chr1:27584533-27588326 REVERSE LENGTH=942;; (*ITAG) Solyc02g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39893591-39897878 transcript_region:SL2.40ch02:39893591..39897878- go_terms:GO:0016157 functional_description:"Sucrose synthase (AHRD V1 **** Q9FHU4_ARATH); contains Interpro domain(s) IPR012820 Sucrose synthase, plants and cyanobacteria "; GO:0016157 NbS00027428g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.5|0|1|1|1|3|0|162; (*GB) gi|359476494|ref|XP_002269094.2| (e_value=3e-44) PREDICTED: protein SET DOMAIN GROUP 40-like [Vitis vinifera];; (*SWP) sp|Q6NQJ8|SDG40_ARATH (e_value=5e-36) Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1;; (*TAIR) AT5G17240.1 (e_value=4e-37) | Symbols: SDG40 | SET domain group 40 | chr5:5666854-5668849 FORWARD LENGTH=491;; (*ITAG) Solyc02g081320.2.1 (e_value=2e-70) genomic_reference:SL2.40ch02 gene_region:39905623-39908287 transcript_region:SL2.40ch02:39905623..39908287- go_terms:GO:0005975 functional_description:"SET domain-containing protein (AHRD V1 ***- D7LWY5_ARALY); contains Interpro domain(s) IPR001214 SET "; GO:0005975 NbS00027428g0020.1 protein AED:0.25 eAED:0.25 QI:174|0.75|0.66|1|0.75|0.66|9|0|460; (*GB) gi|356569663|ref|XP_003553017.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 4-like [Glycine max];; (*SWP) sp|Q8H191|PAO4_ARATH (e_value=0.0) Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1;; (*TAIR) AT1G65840.1 (e_value=0.0) | Symbols: ATPAO4, PAO4 | polyamine oxidase 4 | chr1:24490173-24492728 FORWARD LENGTH=497;; (*ITAG) Solyc02g081390.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39952097-39957169 transcript_region:SL2.40ch02:39952097..39957169- go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00002492g0006.1 protein AED:0.32 eAED:0.35 QI:0|0.33|0|0.75|1|1|4|0|371; (*GB) gi|296081354|emb|CBI16787.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G12990.1 (e_value=0.0) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr1:4433973-4435552 FORWARD LENGTH=392;; (*ITAG) Solyc05g013580.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6883577-6886664 transcript_region:SL2.40ch05:6883577..6886664+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7KPE7_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00009953g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|140 NbS00009953g0012.1 protein AED:0.16 eAED:0.16 QI:205|1|1|1|0.92|0.92|14|274|512; (*GB) gi|359483345|ref|XP_003632941.1| (e_value=0.0) PREDICTED: aspartic proteinase isoform 2 [Vitis vinifera];; (*SWP) sp|O04057|ASPR_CUCPE (e_value=0.0) Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1;; (*TAIR) AT1G11910.1 (e_value=0.0) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc02g080880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39553552-39559262 transcript_region:SL2.40ch02:39553552..39559262- go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q8L6A8_THECC); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00009953g0005.1 protein AED:0.27 eAED:0.54 QI:0|0|0|1|1|1|3|0|72; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=2e-23) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=2e-21) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00009953g0013.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|221; (*GB) gi|225444283|ref|XP_002262807.1| (e_value=3e-95) PREDICTED: uncharacterized protein LOC100265893 [Vitis vinifera];; (*TAIR) AT5G42570.1 (e_value=1e-80) | Symbols: | B-cell receptor-associated 31-like | chr5:17021459-17022497 REVERSE LENGTH=218;; (*ITAG) Solyc02g032930.2.1 (e_value=1e-109) genomic_reference:SL2.40ch02 gene_region:20179350-20185331 transcript_region:SL2.40ch02:20179350..20185331+ go_terms:GO:0016021 functional_description:"B-cell receptor-associated protein 31-like containing protein (AHRD V1 ***- B6TG43_MAIZE); contains Interpro domain(s) IPR008417 B-cell receptor-associated 31-like "; GO:0016021 NbS00028812g0004.1 protein AED:0.29 eAED:0.29 QI:222|0.75|0.69|0.92|0.83|0.76|13|0|497; (*GB) gi|359478275|ref|XP_002274820.2| (e_value=3e-165) PREDICTED: uncharacterized protein LOC100249037 [Vitis vinifera];; (*TAIR) AT3G59780.1 (e_value=4e-137) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr3:22086906-22090324 FORWARD LENGTH=686;; (*ITAG) Solyc03g059180.2.1 (e_value=2e-141) genomic_reference:SL2.40ch03 gene_region:25233405-25241771 transcript_region:SL2.40ch03:25233405..25241771- functional_description:"Extracellular calcium sensing receptor (AHRD V1 *-*- C7BCU7_LIQFO); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00019590g0001.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|418; (*GB) gi|359487465|ref|XP_003633597.1| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100853056 [Vitis vinifera];; (*TAIR) AT2G44380.1 (e_value=2e-21) | Symbols: | Cysteine/Histidine-rich C1 domain family protein | chr2:18323590-18324333 REVERSE LENGTH=247;; (*ITAG) Solyc01g073780.2.1 (e_value=3e-116) genomic_reference:SL2.40ch01 gene_region:70401482-70402837 transcript_region:SL2.40ch01:70401482..70402837- functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9LTY3_ARATH); contains Interpro domain(s) IPR011424 C1-like "; NbS00019590g0011.1 protein AED:0.18 eAED:0.17 QI:0|0.86|0.83|0.96|0.75|0.83|30|405|1562; (*GB) gi|359478773|ref|XP_002283298.2| (e_value=0.0) PREDICTED: callose synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9LXT9|CALS3_ARATH (e_value=0.0) Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3;; (*TAIR) AT5G13000.1 (e_value=0.0) | Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955;; (*ITAG) Solyc01g073750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00019590g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|255574418|ref|XP_002528122.1| (e_value=3e-49) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G19900.1 (e_value=1e-45) | Symbols: | PRLI-interacting factor, putative | chr5:6728561-6730045 REVERSE LENGTH=494;; (*ITAG) Solyc01g073770.2.1 (e_value=8e-104) genomic_reference:SL2.40ch01 gene_region:70398109-70399192 transcript_region:SL2.40ch01:70398109..70399192+ functional_description:"PRLI-interacting factor A (AHRD V1 *-*- B6TGN5_MAIZE)"; NbS00019590g0012.1 protein AED:0.22 eAED:0.22 QI:370|0.62|0.44|0.66|0.75|0.55|9|0|289; (*GB) gi|359487454|ref|XP_002271648.2| (e_value=3e-141) PREDICTED: callose synthase 1-like [Vitis vinifera];; (*SWP) sp|Q9SL03|CALS2_ARATH (e_value=9e-143) Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3;; (*TAIR) AT2G31960.2 (e_value=7e-144) | Symbols: GSL03 | glucan synthase-like 3 | chr2:13589545-13600066 FORWARD LENGTH=1950;; (*ITAG) Solyc01g073750.2.1 (e_value=2e-162) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbC23406045g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|50; (*GB) gi|350538013|ref|NP_001234578.1| (e_value=4e-27) arginase 1 [Solanum lycopersicum];; (*SWP) sp|P46637|ARGI1_ARATH (e_value=4e-28) Arginase OS=Arabidopsis thaliana GN=At4g08900 PE=2 SV=1;; (*TAIR) AT4G08900.1 (e_value=3e-29) | Symbols: | arginase | chr4:5703499-5705180 FORWARD LENGTH=342;; (*ITAG) Solyc01g091160.2.1 (e_value=8e-30) genomic_reference:SL2.40ch01 gene_region:76612669-76617028 transcript_region:SL2.40ch01:76612669..76617028+ go_terms:GO:0046872 functional_description:"Agmatinase (AHRD V1 ***- Q1IPT1_ACIBL); contains Interpro domain(s) IPR006035 Ureohydrolase "; GO:0046872 NbS00021342g0010.1 protein AED:0.12 eAED:0.12 QI:1395|0.87|1|1|0.75|0.77|9|454|264; (*GB) gi|359492982|ref|XP_002285596.2| (e_value=2e-138) PREDICTED: uncharacterized protein LOC100265997 [Vitis vinifera];; (*TAIR) AT5G64460.8 (e_value=2e-128) | Symbols: | Phosphoglycerate mutase family protein | chr5:25773009-25775104 REVERSE LENGTH=282;; (*ITAG) Solyc04g076830.2.1 (e_value=3e-150) genomic_reference:SL2.40ch04 gene_region:59295163-59304028 transcript_region:SL2.40ch04:59295163..59304028- functional_description:"Phosphoglycerate mutase-like protein (AHRD V1 ***- Q8LGT8_SOYBN); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; NbS00033659g0002.1 protein AED:0.35 eAED:0.35 QI:285|1|1|1|0.2|0|6|185|126; (*GB) gi|358248376|ref|NP_001240127.1| (e_value=3e-55) uncharacterized protein LOC100808796 [Glycine max];; (*SWP) sp|Q9ZPQ3|GEK1_ARATH (e_value=7e-48) D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2;; (*TAIR) AT2G03800.1 (e_value=5e-49) | Symbols: GEK1 | D-aminoacyl-tRNA deacylases | chr2:1156782-1158695 FORWARD LENGTH=317;; (*ITAG) Solyc06g069390.2.1 (e_value=9e-70) genomic_reference:SL2.40ch06 gene_region:39540431-39546469 transcript_region:SL2.40ch06:39540431..39546469- go_terms:GO:0051499 functional_description:"D-tyrosyl-tRNA(Tyr) deacylase (AHRD V1 **** DTDA_ARCFU); contains Interpro domain(s) IPR018033 Uncharacterized conserved protein UCP016210 "; GO:0051499 NbS00033659g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|322; (*GB) gi|224118954|ref|XP_002317948.1| (e_value=1e-34) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9LSL6|DOF57_ARATH (e_value=2e-29) Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1;; (*TAIR) AT5G65590.1 (e_value=1e-30) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26212084-26213034 REVERSE LENGTH=316;; (*ITAG) Solyc11g010940.1.1 (e_value=4e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3987715-3989539 transcript_region:SL2.40ch11:3987715..3989539- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00026328g0006.1 protein AED:0.21 eAED:0.24 QI:0|0|0.5|1|0|0.5|2|0|162; (*GB) gi|350538259|ref|NP_001234078.1| (e_value=2e-89) expansin A3 precursor [Solanum lycopersicum];; (*SWP) sp|Q9M9P0|EXP13_ARATH (e_value=6e-78) Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2;; (*TAIR) AT3G03220.1 (e_value=5e-79) | Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1.22, EXPA13 | expansin A13 | chr3:742655-743975 REVERSE LENGTH=266;; (*ITAG) Solyc02g081210.2.1 (e_value=2e-97) genomic_reference:SL2.40ch02 gene_region:39837699-39840600 transcript_region:SL2.40ch02:39837699..39840600+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- Q9ZP33_SOLLC); contains Interpro domain(s) IPR002963 Expansin "; GO:0005576,GO:0009664 NbS00006482g0008.1 protein AED:0.32 eAED:0.32 QI:605|1|0.9|1|0.44|0.6|10|280|244; (*GB) gi|302142217|emb|CBI19420.3| (e_value=1e-65) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43130.1 (e_value=1e-43) | Symbols: TAF4, TAF4B | TBP-associated factor 4 | chr5:17315608-17321144 REVERSE LENGTH=823;; (*ITAG) Solyc04g078050.2.1 (e_value=4e-69) genomic_reference:SL2.40ch04 gene_region:60491106-60503545 transcript_region:SL2.40ch04:60491106..60503545+ go_terms:GO:0005669 functional_description:"Transcription initiation factor (AHRD V1 ***- D3YBD2_TRIRP); contains Interpro domain(s) IPR007900 Transcription initiation factor TFIID component TAF4 "; GO:0005669 NbS00010340g0004.1 protein AED:0.02 eAED:0.02 QI:184|1|1|1|1|0.87|8|424|514; (*GB) gi|225461730|ref|XP_002283370.1| (e_value=1e-158) PREDICTED: uncharacterized protein LOC100250468 [Vitis vinifera];; (*TAIR) AT1G78650.1 (e_value=7e-104) | Symbols: POLD3 | DNA-directed DNA polymerases | chr1:29582987-29585508 FORWARD LENGTH=509;; (*ITAG) Solyc10g007400.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1766561-1772224 transcript_region:SL2.40ch10:1766561..1772224- go_terms:GO:0003887 functional_description:"DNA polymerase subunit delta-3 (AHRD V1 *-** B5X1A6_SALSA); contains Interpro domain(s) IPR019038 DNA polymerase subunit Cdc27 "; GO:0003887 NbS00012870g0011.1 protein AED:0.25 eAED:0.39 QI:88|0.66|0.57|1|0.83|0.71|7|138|381; (*GB) gi|225446553|ref|XP_002279537.1| (e_value=1e-159) PREDICTED: uncharacterized protein HI_0077-like [Vitis vinifera];; (*SWP) sp|P43935|Y077_HAEIN (e_value=8e-31) Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1;; (*TAIR) AT1G06240.1 (e_value=4e-144) | Symbols: | Protein of unknown function DUF455 | chr1:1911166-1912875 FORWARD LENGTH=383;; (*ITAG) Solyc10g008060.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2209939-2214155 transcript_region:SL2.40ch10:2209939..2214155- functional_description:"LOC445834 protein (Fragment) (AHRD V1 **-- Q6DF75_XENLA); contains Interpro domain(s) IPR007402 Protein of unknown function DUF455 "; NbS00012870g0010.1 protein AED:0.08 eAED:0.08 QI:214|0.66|0.57|1|0.5|0.57|7|703|475; (*GB) gi|115361539|gb|ABI95860.1| (e_value=0.0) methionine synthase [Nicotiana suaveolens];; (*SWP) sp|Q42699|METE_CATRO (e_value=0.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=0.0) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00012870g0009.1 protein AED:0.27 eAED:0.29 QI:0|0.54|0.56|0.91|0.59|0.65|23|0|1685; (*GB) gi|224112321|ref|XP_002316152.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK0|PP132_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1;; (*TAIR) AT1G79490.1 (e_value=0.0) | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29900617-29903127 FORWARD LENGTH=836;; (*ITAG) Solyc08g078150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59142339-59144723 transcript_region:SL2.40ch08:59142339..59144723+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KH82_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00012870g0107.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.8|1|0.75|0.8|5|168|408 NbS00012870g0106.1 protein AED:0.10 eAED:0.10 QI:122|0.5|0.66|1|0.5|0.33|3|40|137 NbS00000100g0005.1 protein AED:0.04 eAED:0.04 QI:0|1|0.8|1|1|1|5|0|332; (*GB) gi|350538717|ref|NP_001234612.1| (e_value=0.0) cinnamoyl-CoA reductase [Solanum lycopersicum];; (*SWP) sp|P51104|DFRA_DIACA (e_value=6e-76) Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1;; (*TAIR) AT1G15950.1 (e_value=0.0) | Symbols: CCR1, IRX4, ATCCR1 | cinnamoyl coa reductase 1 | chr1:5478855-5481915 FORWARD LENGTH=344;; (*ITAG) Solyc06g068440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38793903-38796517 transcript_region:SL2.40ch06:38793903..38796517+ go_terms:GO:0016621 functional_description:"Cinnamoyl-CoA reductase (AHRD V1 **** Q4U1I5_SOLLC); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0016621 NbS00015237g0015.1 protein AED:0.10 eAED:0.12 QI:0|0.16|0.14|1|0.33|0.28|7|0|505; (*GB) gi|255582749|ref|XP_002532151.1| (e_value=8e-124) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G73850.1 (e_value=3e-88) | Symbols: | Protein of unknown function (DUF1666) | chr1:27767375-27770386 FORWARD LENGTH=635;; (*ITAG) Solyc03g119470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62127360-62130518 transcript_region:SL2.40ch03:62127360..62130518+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00015237g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0|1|1|1|2|0|145; (*GB) gi|82621168|gb|ABB86272.1| (e_value=2e-49) unknown [Solanum tuberosum];; (*TAIR) AT5G16110.1 (e_value=2e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5261171-5262668 REVERSE LENGTH=244;; (*ITAG) Solyc03g119480.2.1 (e_value=8e-51) genomic_reference:SL2.40ch03 gene_region:62133397-62134846 transcript_region:SL2.40ch03:62133397..62134846+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015237g0014.1 protein AED:0.27 eAED:0.27 QI:0|0.88|0.88|1|0.82|0.83|18|370|462; (*GB) gi|359475324|ref|XP_003631655.1| (e_value=0.0) PREDICTED: probable phenylalanyl-tRNA synthetase alpha chain-like [Vitis vinifera];; (*SWP) sp|Q9T034|SYFA_ARATH (e_value=0.0) Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3;; (*TAIR) AT4G39280.1 (e_value=0.0) | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485;; (*ITAG) Solyc02g090860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46907110-46917832 transcript_region:SL2.40ch02:46907110..46917832- go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 **** B6SS66_MAIZE); contains Interpro domain(s) IPR002319 Phenylalanyl-tRNA synthetase, class IIc-related "; GO:0005515,GO:0004826 NbS00015237g0003.1 protein AED:0.34 eAED:0.47 QI:339|0|0.33|0.66|1|1|3|46|91 NbS00024109g0009.1 protein AED:0.11 eAED:0.11 QI:356|1|1|1|0.8|0.83|6|425|264; (*GB) gi|224140263|ref|XP_002323503.1| (e_value=6e-85) predicted protein [Populus trichocarpa];; (*TAIR) AT2G36885.1 (e_value=8e-72) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | chr2:15482167-15483676 REVERSE LENGTH=256;; (*ITAG) Solyc09g008270.2.1 (e_value=7e-94) genomic_reference:SL2.40ch09 gene_region:1740287-1743899 transcript_region:SL2.40ch09:1740287..1743899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024109g0004.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|69 NbS00024109g0010.1 protein AED:0.28 eAED:0.42 QI:0|0|0|1|0|0|2|0|96; (*GB) gi|57013917|ref|YP_173390.1| (e_value=2e-34) hypothetical protein NitaMp044 [Nicotiana tabacum]; NbS00037357g0009.1 protein AED:0.06 eAED:0.06 QI:92|0.5|0.33|1|1|1|3|0|303; (*GB) gi|224137528|ref|XP_002322580.1| (e_value=3e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE1|MCA9_ARATH (e_value=1e-112) Metacaspase-9 OS=Arabidopsis thaliana GN=AMC9 PE=1 SV=1;; (*TAIR) AT5G04200.1 (e_value=8e-114) | Symbols: AtMC9, MC9 | metacaspase 9 | chr5:1153893-1154870 FORWARD LENGTH=325;; (*ITAG) Solyc10g081300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61728461-61730388 transcript_region:SL2.40ch10:61728461..61730388- go_terms:GO:0006508 functional_description:"Metacaspase 7 (AHRD V1 *-*- D7KWG9_ARALY); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508 NbS00037357g0008.1 protein AED:0.15 eAED:0.15 QI:37|1|1|1|0.75|0.8|5|753|159; (*GB) gi|297816972|ref|XP_002876369.1| (e_value=2e-81) hypothetical protein ARALYDRAFT_486090 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P42856|ZB14_MAIZE (e_value=8e-74) 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1;; (*TAIR) AT3G56490.1 (e_value=1e-83) | Symbols: HIT3, HINT1 | HIS triad family protein 3 | chr3:20941532-20943129 FORWARD LENGTH=147;; (*ITAG) Solyc10g081310.1.1 (e_value=1e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61732156-61735368 transcript_region:SL2.40ch10:61732156..61735368- go_terms:GO:0003824 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein "; GO:0003824 NbS00054059g0003.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|106; (*GB) gi|351727200|ref|NP_001235361.1| (e_value=4e-50) uncharacterized protein LOC100305947 [Glycine max];; (*SWP) sp|Q9M015|Y5161_ARATH (e_value=4e-46) Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1;; (*TAIR) AT3G08890.2 (e_value=1e-49) | Symbols: | Protein of unknown function, DUF538 | chr3:2706701-2707775 FORWARD LENGTH=170;; (*ITAG) Solyc10g085300.1.1 (e_value=5e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63850620-63853872 transcript_region:SL2.40ch10:63850620..63853872- functional_description:"Os03g0210500 protein (Fragment) (AHRD V1 *-*- Q0DU33_ORYSJ); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; NbS00006619g0004.1 protein AED:0.02 eAED:0.05 QI:0|1|0|1|1|1|2|0|196; (*GB) gi|224110818|ref|XP_002315645.1| (e_value=2e-68) hypothetical protein POPTRDRAFT_726168 [Populus trichocarpa];; (*SWP) sp|P80470|PSBY_SPIOL (e_value=6e-46) Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2;; (*TAIR) AT1G67740.1 (e_value=4e-36) | Symbols: PSBY, YCF32 | photosystem II BY | chr1:25394429-25394998 REVERSE LENGTH=189;; (*ITAG) Solyc10g077120.1.1 (e_value=3e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59320450-59321013 transcript_region:SL2.40ch10:59320450..59321013+ functional_description:"Photosystem II core complex proteins psbY (AHRD V1 *-*- B6SR26_MAIZE)"; NbS00006619g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.9|0.72|1|1|1|11|0|422; (*GB) gi|225456860|ref|XP_002279764.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase AFC2 [Vitis vinifera];; (*SWP) sp|P51567|AFC2_ARATH (e_value=0.0) Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1;; (*TAIR) AT4G24740.1 (e_value=0.0) | Symbols: AFC2, AME1, FC2 | FUS3-complementing gene 2 | chr4:12754729-12757653 REVERSE LENGTH=427;; (*ITAG) Solyc03g112050.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56639937-56643720 transcript_region:SL2.40ch03:56639937..56643720+ go_terms:GO:0004674,GO:0004715 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0004715 NbS00006619g0008.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|476; (*GB) gi|584863|sp|P37117.1|C71A4_SOLME (e_value=0.0) RecName: Full=Cytochrome P450 71A4; AltName: Full=CYPLXXIA4; AltName: Full=Cytochrome P-450EG2;; (*SWP) sp|P37117|C71A4_SOLME (e_value=0.0) Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1;; (*TAIR) AT3G48290.1 (e_value=4e-162) | Symbols: CYP71A24 | cytochrome P450, family 71, subfamily A, polypeptide 24 | chr3:17882590-17884134 FORWARD LENGTH=488;; (*ITAG) Solyc03g112010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56619691-56622220 transcript_region:SL2.40ch03:56619691..56622220- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00037942g0004.1 protein AED:0.03 eAED:0.03 QI:0|0.25|0.2|1|0.25|0|5|413|1106; (*GB) gi|339790467|dbj|BAK52390.1| (e_value=0.0) leucine rich repeat receptor protein kinase CLAVATA1 [Solanum peruvianum];; (*SWP) sp|O49545|BAME1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT5G65700.2 (e_value=0.0) | Symbols: BAM1 | Leucine-rich receptor-like protein kinase family protein | chr5:26281826-26284945 FORWARD LENGTH=1003;; (*ITAG) Solyc02g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47648877-47652967 transcript_region:SL2.40ch02:47648877..47652967+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00023210g0005.1 protein AED:0.34 eAED:0.36 QI:26|1|0|1|1|0.5|2|0|147; (*GB) gi|225463002|ref|XP_002264271.1| (e_value=2e-67) PREDICTED: uncharacterized protein LOC100256785 [Vitis vinifera];; (*TAIR) AT3G18760.1 (e_value=4e-55) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr3:6457930-6459558 REVERSE LENGTH=139;; (*ITAG) Solyc02g084380.2.1 (e_value=2e-77) genomic_reference:SL2.40ch02 gene_region:42082832-42084189 transcript_region:SL2.40ch02:42082832..42084189+ go_terms:GO:0005840 functional_description:"Genomic DNA chromosome 3 P1 clone MVE11 (AHRD V1 **-- Q9LSA1_ARATH); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00024064g0005.1 protein AED:0.19 eAED:0.19 QI:0|0.87|0.66|1|0.62|0.55|9|442|411; (*GB) gi|225429492|ref|XP_002278242.1| (e_value=1e-132) PREDICTED: uncharacterized protein LOC100243991 [Vitis vinifera];; (*TAIR) AT5G11960.1 (e_value=1e-125) | Symbols: | Protein of unknown function (DUF803) | chr5:3858852-3861462 REVERSE LENGTH=344;; (*ITAG) Solyc06g036780.2.1 (e_value=1e-180) genomic_reference:SL2.40ch06 gene_region:24511239-24528169 transcript_region:SL2.40ch06:24511239..24528169+ go_terms:GO:0016020 functional_description:"Os01g0708300 protein (Fragment) (AHRD V1 *-*- Q0JJY9_ORYSJ); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00024938g0009.1 protein AED:0.09 eAED:0.11 QI:0|0.7|0.45|1|0.6|0.54|11|159|653; (*GB) gi|255571240|ref|XP_002526570.1| (e_value=1e-138) brca1 associated ring domain, putative [Ricinus communis];; (*SWP) sp|Q8RXD4|BRCA1_ARATH (e_value=1e-67) Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana GN=BRCA1 PE=2 SV=1;; (*TAIR) AT1G04020.1 (e_value=5e-110) | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=714;; (*ITAG) Solyc06g008210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2089179-2096386 transcript_region:SL2.40ch06:2089179..2096386- go_terms:GO:0003713,GO:0003677 functional_description:"Breast cancer type 1 susceptibility protein homolog (Fragment) (AHRD V1 *--- A5A751_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713,GO:0003677 NbS00024938g0010.1 protein AED:0.20 eAED:0.20 QI:17|0.62|0.44|0.88|0.5|0.44|9|0|507; (*GB) gi|4519671|dbj|BAA75684.1| (e_value=1e-156) WERBP-1 [Nicotiana tabacum];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-26) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G28610.1 (e_value=2e-83) | Symbols: PHR1, AtPHR1 | phosphate starvation response 1 | chr4:14133164-14134951 REVERSE LENGTH=409;; (*ITAG) Solyc06g008200.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2083305-2088344 transcript_region:SL2.40ch06:2083305..2088344+ go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- B4F7W7_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00005566g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0|1|1|1|2|0|409; (*GB) gi|225455992|ref|XP_002276828.1| (e_value=7e-156) PREDICTED: uncharacterized protein LOC100247520 [Vitis vinifera];; (*TAIR) AT1G68390.1 (e_value=2e-133) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408;; (*ITAG) Solyc12g036400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30960699-30962488 transcript_region:SL2.40ch12:30960699..30962488- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 *-*- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00019509g0010.1 protein AED:0.32 eAED:0.32 QI:0|0|0.33|0.33|1|1|3|0|131 NbS00019509g0011.1 protein AED:0.19 eAED:0.19 QI:0|0.58|0.38|0.84|0.75|0.84|13|0|527; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=3e-17) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT2G22620.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc11g011300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4340301-4347968 transcript_region:SL2.40ch11:4340301..4347968+ go_terms:GO:0030246,GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246,GO:0005975 NbS00019190g0020.1 protein AED:0.10 eAED:0.10 QI:128|1|1|1|0.72|0.66|12|627|267; (*GB) gi|224118158|ref|XP_002317745.1| (e_value=1e-88) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4V8K4|S2539_RAT (e_value=6e-15) Solute carrier family 25 member 39 OS=Rattus norvegicus GN=Slc25a39 PE=2 SV=1;; (*TAIR) AT4G27940.1 (e_value=2e-78) | Symbols: ATMTM1, MTM1 | manganese tracking factor for mitochondrial SOD2 | chr4:13904745-13907036 FORWARD LENGTH=413;; (*ITAG) Solyc03g007430.2.1 (e_value=3e-97) genomic_reference:SL2.40ch03 gene_region:1969931-1977886 transcript_region:SL2.40ch03:1969931..1977886- go_terms:GO:0000095,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0000095,GO:0016530 NbS00019190g0019.1 protein AED:0.40 eAED:0.40 QI:0|0.87|0.77|0.88|0.75|0.55|9|348|263; (*GB) gi|225462735|ref|XP_002269132.1| (e_value=1e-146) PREDICTED: probable protein phosphatase 2C 76 [Vitis vinifera];; (*SWP) sp|Q94AT1|P2C76_ARATH (e_value=6e-139) Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1;; (*TAIR) AT5G53140.1 (e_value=5e-140) | Symbols: | Protein phosphatase 2C family protein | chr5:21549228-21552132 FORWARD LENGTH=420;; (*ITAG) Solyc03g007270.2.1 (e_value=6e-149) genomic_reference:SL2.40ch03 gene_region:1829886-1837101 transcript_region:SL2.40ch03:1829886..1837101+ go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B5A9S6_HEVBR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00019190g0015.1 protein AED:0.67 eAED:0.67 QI:26|0|0.5|0.5|0|0|2|2|32 NbS00019190g0003.1 protein AED:0.08 eAED:0.08 QI:195|1|1|1|0.25|0|5|998|316; (*GB) gi|255545060|ref|XP_002513591.1| (e_value=4e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g007420.2.1 (e_value=7e-75) genomic_reference:SL2.40ch03 gene_region:1963164-1967696 transcript_region:SL2.40ch03:1963164..1967696+ functional_description:"Genomic DNA chromosome 5 TAC clone K19E1 (AHRD V1 *-*- Q9FK19_ARATH)"; NbS00019190g0022.1 protein AED:0.25 eAED:0.25 QI:0|0.33|0|0.5|1|0.75|4|0|275; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=8e-110) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=8e-98) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=6e-99) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc03g007260.2.1 (e_value=3e-133) genomic_reference:SL2.40ch03 gene_region:1813353-1817349 transcript_region:SL2.40ch03:1813353..1817349- go_terms:GO:0030551 functional_description:"Cyclic nucleotide-gated ion channel 1 (AHRD V1 **** B6U0R1_MAIZE); contains Interpro domain(s) IPR005821 Ion transport "; GO:0030551 NbS00039712g0003.1 protein AED:0.04 eAED:0.09 QI:0|0.5|0.66|1|0.5|0.33|3|1617|62 NbS00004907g0007.1 protein AED:0.11 eAED:0.11 QI:151|0.84|0.85|0.92|0.46|0.64|14|489|405; (*GB) gi|353731074|ref|NP_001238799.1| (e_value=0.0) delta14-sterol reductase [Solanum lycopersicum];; (*SWP) sp|Q9LDR4|ERG24_ARATH (e_value=9e-173) Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2;; (*TAIR) AT3G52940.1 (e_value=7e-174) | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis ERG4/ERG24 family | chr3:19630369-19633112 REVERSE LENGTH=369;; (*ITAG) Solyc09g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2385547-2393745 transcript_region:SL2.40ch09:2385547..2393745+ go_terms:GO:0050613 functional_description:"Delta14-sterol reductase (AHRD V1 **** E1AQY4_SOLLC); contains Interpro domain(s) IPR001171 Ergosterol biosynthesis ERG4/ERG24 "; GO:0050613 NbS00009692g0013.1 protein AED:0.28 eAED:0.33 QI:0|0.33|0|1|0|0.25|4|34|592; (*GB) gi|296086134|emb|CBI31575.3| (e_value=8e-95) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LMF0|U85A5_ARATH (e_value=6e-49) UDP-glycosyltransferase 85A5 OS=Arabidopsis thaliana GN=UGT85A5 PE=2 SV=1;; (*TAIR) AT1G22370.2 (e_value=5e-50) | Symbols: AtUGT85A5, UGT85A5 | UDP-glucosyl transferase 85A5 | chr1:7898116-7899879 REVERSE LENGTH=479;; (*ITAG) Solyc02g091370.2.1 (e_value=2e-108) genomic_reference:SL2.40ch02 gene_region:47260723-47262419 transcript_region:SL2.40ch02:47260723..47262419+ go_terms:GO:0015020 functional_description:"Glucosyltransferase-2 (AHRD V1 ***- Q8S9A7_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00023833g0003.1 protein AED:0.35 eAED:0.41 QI:0|0|0|0.54|0.6|0.72|11|0|282; (*ITAG) Solyc03g044840.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00038242g0003.1 protein AED:0.01 eAED:0.01 QI:74|1|1|1|1|1|2|82|306; (*GB) gi|225439592|ref|XP_002265892.1| (e_value=8e-162) PREDICTED: sex determination protein tasselseed-2-like [Vitis vinifera];; (*SWP) sp|P50160|TS2_MAIZE (e_value=2e-112) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=6e-137) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc10g085380.1.1 (e_value=1e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63909641-63910974 transcript_region:SL2.40ch10:63909641..63910974+ go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4Y6_ZEALU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00019167g0011.1 protein AED:0.02 eAED:0.02 QI:42|1|1|1|1|1|3|314|502; (*GB) gi|225427252|ref|XP_002278650.1| (e_value=0.0) PREDICTED: leucine-rich repeat protein soc-2 [Vitis vinifera];; (*SWP) sp|Q7KRY7|LAP4_DROME (e_value=9e-36) Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1;; (*TAIR) AT4G35470.1 (e_value=8e-140) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc08g006970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1548922-1552302 transcript_region:SL2.40ch08:1548922..1552302+ go_terms:GO:0008022,GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0008022,GO:0019903 NbS00019167g0016.1 protein AED:0.31 eAED:0.31 QI:270|0.92|0.92|1|0.92|0.85|14|579|439; (*GB) gi|225427268|ref|XP_002281297.1| (e_value=0.0) PREDICTED: AP-2 complex subunit mu [Vitis vinifera];; (*SWP) sp|P54672|AP2M_DICDI (e_value=1e-161) AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2;; (*TAIR) AT5G46630.1 (e_value=0.0) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923252 FORWARD LENGTH=438;; (*ITAG) Solyc08g006960.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1538603-1546249 transcript_region:SL2.40ch08:1538603..1546249- go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00019167g0014.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|721; (*GB) gi|225427250|ref|XP_002281049.1| (e_value=0.0) PREDICTED: MND1-interacting protein 1 [Vitis vinifera];; (*SWP) sp|Q8RX22|MIP1_ARATH (e_value=1e-176) MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1;; (*TAIR) AT2G35330.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr2:14869179-14871673 FORWARD LENGTH=738;; (*ITAG) Solyc08g006980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1555009-1559443 transcript_region:SL2.40ch08:1555009..1559443+ go_terms:GO:0005515 functional_description:"Baculoviral IAP repeat-containing protein 3 (AHRD V1 *--- B0XJ37_CULQU); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515 NbS00019167g0017.1 protein AED:0.22 eAED:0.22 QI:90|0.25|0.2|1|0.25|0.2|5|0|426; (*GB) gi|356534456|ref|XP_003535770.1| (e_value=1e-117) PREDICTED: aluminum-activated malate transporter 12-like [Glycine max];; (*SWP) sp|Q9LS22|ALMTE_ARATH (e_value=9e-104) Aluminum-activated malate transporter 14 OS=Arabidopsis thaliana GN=ALMT14 PE=2 SV=1;; (*TAIR) AT5G46610.1 (e_value=7e-105) | Symbols: | Aluminium activated malate transporter family protein | chr5:18913115-18915736 REVERSE LENGTH=543;; (*ITAG) Solyc08g006990.1.1 (e_value=6e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:1562856-1567169 transcript_region:SL2.40ch08:1562856..1567169+ go_terms:GO:0008509 functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--* C6EP55_SECCE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0008509 NbS00015198g0013.1 protein AED:0.14 eAED:0.14 QI:135|0.75|0.6|1|0.75|0.4|5|0|200; (*GB) gi|359495501|ref|XP_002271089.2| (e_value=5e-59) PREDICTED: anaphase-promoting complex subunit 4-like [Vitis vinifera];; (*SWP) sp|O65418|APC4_ARATH (e_value=9e-47) Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=1 SV=2;; (*TAIR) AT4G21530.1 (e_value=7e-48) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:11450743-11455862 FORWARD LENGTH=777;; (*ITAG) Solyc02g079050.2.1 (e_value=4e-88) genomic_reference:SL2.40ch02 gene_region:38248802-38262570 transcript_region:SL2.40ch02:38248802..38262570- functional_description:"Anaphase promoting complex subunit 4 (AHRD V1 ***- Q3Y4F2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00015198g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc11g068410.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00015198g0012.1 protein AED:0.36 eAED:0.36 QI:59|0|0.25|0.75|0|0.25|4|0|139; (*GB) gi|255567395|ref|XP_002524677.1| (e_value=4e-18) Anaphase-promoting complex subunit, putative [Ricinus communis];; (*SWP) sp|O65418|APC4_ARATH (e_value=3e-15) Anaphase-promoting complex subunit 4 OS=Arabidopsis thaliana GN=APC4 PE=1 SV=2;; (*TAIR) AT4G21530.1 (e_value=3e-16) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:11450743-11455862 FORWARD LENGTH=777;; (*ITAG) Solyc02g079050.2.1 (e_value=7e-26) genomic_reference:SL2.40ch02 gene_region:38248802-38262570 transcript_region:SL2.40ch02:38248802..38262570- functional_description:"Anaphase promoting complex subunit 4 (AHRD V1 ***- Q3Y4F2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00015198g0011.1 protein AED:0.22 eAED:0.22 QI:288|0.75|0.55|1|0.5|0.66|9|0|525; (*GB) gi|359495503|ref|XP_002273993.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100256775 [Vitis vinifera];; (*TAIR) AT5G57580.1 (e_value=1e-123) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647;; (*ITAG) Solyc02g079040.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38241517-38248511 transcript_region:SL2.40ch02:38241517..38248511+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00025982g0019.1 protein AED:0.06 eAED:0.06 QI:193|0.90|0.91|1|1|1|12|262|450; (*GB) gi|225435307|ref|XP_002285127.1| (e_value=0.0) PREDICTED: ruvB-like 1-like [Vitis vinifera];; (*SWP) sp|Q9DE26|RUVB1_XENLA (e_value=0.0) RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1;; (*TAIR) AT5G22330.1 (e_value=0.0) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458;; (*ITAG) Solyc11g069370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51054007-51059005 transcript_region:SL2.40ch11:51054007..51059005+ go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00025982g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|141; (*GB) gi|359478345|ref|XP_003632110.1| (e_value=3e-19) PREDICTED: uncharacterized protein LOC100853079 [Vitis vinifera];; (*TAIR) AT2G28410.1 (e_value=1e-14) | Symbols: | unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12156202-12156549 FORWARD LENGTH=115;; (*ITAG) Solyc11g069420.1.1 (e_value=1e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51086106-51086531 transcript_region:SL2.40ch11:51086106..51086531- functional_description:"Genomic DNA chromosome 5 P1 clone MUP24 (AHRD V1 -**- Q9FF54_ARATH)"; NbS00025982g0004.1 protein AED:0.39 eAED:0.39 QI:0|0.5|0.2|1|1|1|5|133|131; (*GB) gi|224104509|ref|XP_002313460.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q86U90|YRDC_HUMAN (e_value=1e-19) YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1;; (*TAIR) AT5G60590.2 (e_value=5e-47) | Symbols: | DHBP synthase RibB-like alpha/beta domain | chr5:24357066-24358443 FORWARD LENGTH=288;; (*ITAG) Solyc11g069360.1.1 (e_value=2e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51048276-51052497 transcript_region:SL2.40ch11:51048276..51052497+ functional_description:"Sua5/YciO/YrdC/YwlC family protein (AHRD V1 ***- B1L6Z2_KORCO); contains Interpro domain(s) IPR004388 Sua5/YciO/YrdC/YwlC "; NbS00025982g0018.1 protein AED:0.44 eAED:0.51 QI:0|0.5|0.33|1|0|0|3|0|103; (*ITAG) Solyc11g069360.1.1 (e_value=9e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51048276-51052497 transcript_region:SL2.40ch11:51048276..51052497+ functional_description:"Sua5/YciO/YrdC/YwlC family protein (AHRD V1 ***- B1L6Z2_KORCO); contains Interpro domain(s) IPR004388 Sua5/YciO/YrdC/YwlC "; NbS00025982g0015.1 protein AED:0.14 eAED:0.14 QI:116|1|1|1|0.5|0.33|3|474|85; (*GB) gi|225435317|ref|XP_002285144.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100263969 [Vitis vinifera];; (*TAIR) AT2G28430.1 (e_value=2e-25) | Symbols: | unknown protein; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:12159736-12160387 REVERSE LENGTH=85;; (*ITAG) Solyc11g069410.1.1 (e_value=5e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:51081439-51084930 transcript_region:SL2.40ch11:51081439..51084930+ functional_description:"Zinc finger C3HC4 type family protein expressed (AHRD V1 **-- Q7XDA5_ORYSJ)"; NbS00025982g0016.1 protein AED:0.43 eAED:0.44 QI:0|0|0|1|0|0|2|0|111 NbS00015681g0010.1 protein AED:0.03 eAED:0.03 QI:772|1|1|1|1|1|4|661|379; (*GB) gi|225439795|ref|XP_002276631.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 38-like [Vitis vinifera];; (*SWP) sp|Q9LHJ9|P2C38_ARATH (e_value=0.0) Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1;; (*TAIR) AT3G12620.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr3:4009510-4010993 REVERSE LENGTH=385;; (*ITAG) Solyc09g007080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:728203-731141 transcript_region:SL2.40ch09:728203..731141+ go_terms:GO:0004722 functional_description:"Serine/threonine protein phosphatase 2C (AHRD V1 **** D7LV04_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00015681g0008.1 protein AED:0.07 eAED:0.07 QI:39|1|0.5|1|0|0.5|2|62|93; (*ITAG) Solyc02g030080.2.1 (e_value=6e-13) genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00015681g0009.1 protein AED:0.47 eAED:0.61 QI:0|0.33|0.25|1|0.66|0.5|4|0|128; (*ITAG) Solyc02g030080.2.1 (e_value=2e-28) genomic_reference:SL2.40ch02 gene_region:15755355-15764775 transcript_region:SL2.40ch02:15755355..15764775- go_terms:GO:0000166 functional_description:"WD-40 repeat protein (AHRD V1 *-*- B4D682_9BACT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00015681g0007.1 protein AED:0.41 eAED:0.41 QI:0|0.83|0.57|1|0.83|0.71|7|87|196; (*GB) gi|356505170|ref|XP_003521365.1| (e_value=4e-34) PREDICTED: uncharacterized protein LOC100816435 [Glycine max];; (*TAIR) AT5G02770.1 (e_value=1e-26) | Symbols: | unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | chr5:628101-629168 REVERSE LENGTH=214;; (*ITAG) Solyc09g007090.2.1 (e_value=1e-65) genomic_reference:SL2.40ch09 gene_region:732671-734752 transcript_region:SL2.40ch09:732671..734752- functional_description:"Unknown Protein (AHRD V1)"; NbS00059151g0001.1 protein AED:0.14 eAED:0.20 QI:0|1|0.5|1|0|0|2|126|324; (*GB) gi|225451665|ref|XP_002277996.1| (e_value=2e-81) PREDICTED: uncharacterized protein LOC100249764 [Vitis vinifera];; (*TAIR) AT5G13890.3 (e_value=4e-74) | Symbols: | Family of unknown function (DUF716) | chr5:4479940-4480872 REVERSE LENGTH=310;; (*ITAG) Solyc05g008590.2.1 (e_value=3e-99) genomic_reference:SL2.40ch05 gene_region:2912716-2917087 transcript_region:SL2.40ch05:2912716..2917087+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; NbS00059151g0007.1 protein AED:0.13 eAED:0.13 QI:122|0.89|0.9|1|0.73|0.8|20|644|703; (*GB) gi|224062133|ref|XP_002300771.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P04844|RPN2_HUMAN (e_value=4e-20) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3;; (*TAIR) AT4G21150.3 (e_value=0.0) | Symbols: HAP6 | ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691;; (*ITAG) Solyc05g046330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:57707327-57721255 transcript_region:SL2.40ch05:57707327..57721255- go_terms:GO:0008250 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (AHRD V1 *--- RPN2_HUMAN); contains Interpro domain(s) IPR008814 Ribophorin II "; GO:0008250 NbS00004457g0004.1 protein AED:0.05 eAED:0.09 QI:0|0.5|0|1|1|1|3|0|298; (*GB) gi|147777220|emb|CAN63288.1| (e_value=6e-116) hypothetical protein VITISV_025196 [Vitis vinifera];; (*SWP) sp|P50160|TS2_MAIZE (e_value=1e-39) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT3G42960.1 (e_value=9e-86) | Symbols: ATA1, ASD, TA1 | TAPETUM 1 | chr3:15018735-15019656 REVERSE LENGTH=272;; (*ITAG) Solyc11g018600.1.1 (e_value=6e-125) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8763294-8764711 transcript_region:SL2.40ch11:8763294..8764711- go_terms:GO:0008152,GO:0055114 functional_description:"3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase (AHRD V1 *-*- HCAB_ECO5E); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00004457g0006.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.2|1|0.5|0.6|5|531|447; (*GB) gi|255571340|ref|XP_002526619.1| (e_value=0.0) protein kinase, putative [Ricinus communis];; (*TAIR) AT5G58520.1 (e_value=4e-167) | Symbols: | Protein kinase superfamily protein | chr5:23655312-23657943 FORWARD LENGTH=604;; (*ITAG) Solyc06g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44384883-44389852 transcript_region:SL2.40ch06:44384883..44389852- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00004457g0108.1 protein AED:0.04 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|160 NbS00004457g0107.1 protein AED:0.35 eAED:0.35 QI:0|0.66|0.5|0.75|1|1|4|0|211 NbS00022363g0008.1 protein AED:0.24 eAED:0.23 QI:164|1|0.9|1|0.88|1|10|440|394; (*GB) gi|297739777|emb|CBI29959.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q1ACB3|HPT2_ARATH (e_value=0.0) Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1;; (*TAIR) AT3G11945.1 (e_value=0.0) | Symbols: PDS2, ATHST, HST | homogentisate prenyltransferase | chr3:3780041-3782880 REVERSE LENGTH=386;; (*ITAG) Solyc03g051810.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:18871399-18877676 transcript_region:SL2.40ch03:18871399..18877676+ go_terms:GO:0010357,GO:0010356,GO:0010355 functional_description:"Homogentisate phytyltransferase (AHRD V1 **-* D4ZR29_SPIPL); contains Interpro domain(s) IPR000537 UbiA prenyltransferase "; GO:0010357,GO:0010356,GO:0010355 NbS00022363g0007.1 protein AED:0.11 eAED:0.12 QI:84|0.83|0.71|1|0.5|0.71|7|0|620; (*GB) gi|255581570|ref|XP_002531590.1| (e_value=3e-172) calmodulin binding protein, putative [Ricinus communis];; (*TAIR) AT3G58480.1 (e_value=2e-137) | Symbols: | calmodulin-binding family protein | chr3:21629341-21631853 FORWARD LENGTH=575;; (*ITAG) Solyc10g080640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61200494-61203396 transcript_region:SL2.40ch10:61200494..61203396+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 *--* B6U0B7_MAIZE)"; GO:0005516 NbS00054669g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|90|319; (*GB) gi|225432588|ref|XP_002277866.1| (e_value=8e-79) PREDICTED: probable carboxylesterase 2-like [Vitis vinifera];; (*SWP) sp|Q9SMN0|CXE12_ARATH (e_value=2e-67) Probable carboxylesterase 12 OS=Arabidopsis thaliana GN=CXE12 PE=2 SV=1;; (*TAIR) AT3G48690.1 (e_value=1e-68) | Symbols: ATCXE12, CXE12 | alpha/beta-Hydrolases superfamily protein | chr3:18037186-18038160 REVERSE LENGTH=324;; (*ITAG) Solyc04g005230.2.1 (e_value=1e-159) genomic_reference:SL2.40ch04 gene_region:179694-181614 transcript_region:SL2.40ch04:179694..181614- go_terms:GO:0004091 functional_description:"Gibberellin receptor GID1L2 (AHRD V1 **-- B6T2M3_MAIZE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0004091 NbS00009407g0011.1 protein AED:0.02 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|331; (*GB) gi|18410796|ref|NP_567053.1| (e_value=6e-67) putative protein kinase [Arabidopsis thaliana];; (*SWP) sp|O80795|Y1652_ARATH (e_value=7e-44) Probable inactive receptor-like protein kinase At1g65250 OS=Arabidopsis thaliana GN=At1g65250 PE=2 SV=1;; (*TAIR) AT3G57750.2 (e_value=1e-69) | Symbols: | Protein kinase superfamily protein | chr3:21394050-21395054 FORWARD LENGTH=334;; (*ITAG) Solyc06g060690.2.1 (e_value=7e-58) genomic_reference:SL2.40ch06 gene_region:35101221-35102882 transcript_region:SL2.40ch06:35101221..35102882- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00009407g0002.1 protein AED:0.03 eAED:0.03 QI:285|1|0.87|1|0.57|0.5|8|0|237; (*GB) gi|255563296|ref|XP_002522651.1| (e_value=6e-103) carbonic anhydrase, putative [Ricinus communis];; (*SWP) sp|P17067|CAHC_PEA (e_value=2e-60) Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1;; (*TAIR) AT4G33580.1 (e_value=1e-90) | Symbols: ATBCA5, BCA5 | beta carbonic anhydrase 5 | chr4:16139406-16141363 FORWARD LENGTH=301;; (*ITAG) Solyc09g010970.2.1 (e_value=3e-139) genomic_reference:SL2.40ch09 gene_region:4321597-4325542 transcript_region:SL2.40ch09:4321597..4325542- go_terms:GO:0005515 functional_description:"Carbonic anhydrase (AHRD V1 ***- B9S9I2_RICCO); contains Interpro domain(s) IPR001765 Carbonic anhydrase "; GO:0005515 NbS00009407g0003.1 protein AED:0.19 eAED:0.19 QI:0|1|1|1|0.75|0.6|5|311|459; (*GB) gi|297835736|ref|XP_002885750.1| (e_value=0.0) hypothetical protein ARALYDRAFT_342773 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q7N3Y5|ZNTB_PHOLL (e_value=3e-12) Zinc transport protein ZntB OS=Photorhabdus luminescens subsp. laumondii (strain TT01) GN=zntB PE=3 SV=1;; (*TAIR) AT2G04305.1 (e_value=0.0) | Symbols: | Magnesium transporter CorA-like family protein | chr2:1501679-1503448 REVERSE LENGTH=434;; (*ITAG) Solyc08g069000.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55288480-55295702 transcript_region:SL2.40ch08:55288480..55295702- functional_description:"Zinc transport protein zntB (AHRD V1 *-*- C4U8N0_YERAL)"; NbS00032527g0008.1 protein AED:0.28 eAED:0.29 QI:407|0.61|0.71|1|0.92|0.85|14|0|952; (*GB) gi|224076806|ref|XP_002305001.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0D5G4|Y7633_ORYSJ (e_value=0.0) B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2;; (*TAIR) AT4G32010.1 (e_value=1e-141) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc02g079020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38216434-38227691 transcript_region:SL2.40ch02:38216434..38227691- go_terms:GO:0005515,GO:0003700,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0003700,GO:0016564 NbS00038422g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.5|1|0.66|0.75|4|0|644; (*GB) gi|224131788|ref|XP_002328108.1| (e_value=2e-164) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=2e-28) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT3G11590.1 (e_value=4e-118) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc11g068720.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50435738-50439395 transcript_region:SL2.40ch11:50435738..50439395+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00002171g0005.1 protein AED:0.09 eAED:0.11 QI:0|0|0|0.66|0.5|0.66|3|0|191; (*GB) gi|334902911|gb|AEH25587.1| (e_value=1e-24) transposase [Solanum demissum];; (*ITAG) Solyc04g039710.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:30313465-30314055 transcript_region:SL2.40ch04:30313465..30314055+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00002171g0114.1 protein AED:0.37 eAED:0.38 QI:256|0.90|0.83|1|0.72|0.75|12|0|225 NbS00002171g0113.1 protein AED:0.05 eAED:0.05 QI:231|1|1|1|0.66|0.5|4|423|152 NbS00002171g0110.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|83 NbS00002171g0115.1 protein AED:0.29 eAED:0.33 QI:0|0|0|1|0|0|3|0|339 NbS00002306g0010.1 protein AED:0.18 eAED:0.18 QI:169|1|1|1|1|1|2|594|124; (*GB) gi|77745460|gb|ABB02629.1| (e_value=2e-41) unknown [Solanum tuberosum];; (*TAIR) AT5G16110.1 (e_value=9e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5261171-5262668 REVERSE LENGTH=244;; (*ITAG) Solyc06g069120.2.1 (e_value=2e-43) genomic_reference:SL2.40ch06 gene_region:39292001-39293674 transcript_region:SL2.40ch06:39292001..39293674+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002306g0002.1 protein AED:0.42 eAED:0.42 QI:0|1|0.5|1|1|1|2|16|106; (*GB) gi|224118830|ref|XP_002317917.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9B4|NDBAA_ARATH (e_value=6e-57) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-A OS=Arabidopsis thaliana GN=At1g49140 PE=3 SV=1;; (*TAIR) AT1G49140.1 (e_value=5e-58) | Symbols: | Complex I subunit NDUFS6 | chr1:18177696-18178269 REVERSE LENGTH=107;; (*ITAG) Solyc12g036790.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:32765403-32770909 transcript_region:SL2.40ch12:32765403..32770909- functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 *-*- C1GT14_PARBA)"; NbS00002306g0014.1 protein AED:0.46 eAED:0.46 QI:0|0|0.25|0.25|0.66|1|4|74|65 NbS00006570g0008.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|1|2|199|324; (*GB) gi|255562530|ref|XP_002522271.1| (e_value=1e-141) BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis];; (*SWP) sp|Q9ZV88|BEH4_ARATH (e_value=3e-124) BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1;; (*TAIR) AT1G78700.1 (e_value=3e-125) | Symbols: BEH4 | BES1/BZR1 homolog 4 | chr1:29599854-29601539 FORWARD LENGTH=325;; (*ITAG) Solyc03g005990.2.1 (e_value=6e-178) genomic_reference:SL2.40ch03 gene_region:667344-672399 transcript_region:SL2.40ch03:667344..672399- go_terms:GO:0030528 functional_description:"BES1/BZR1 homolog protein 4 (AHRD V1 **-- BEH4_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00006570g0007.1 protein AED:0.16 eAED:0.16 QI:127|0.75|0.8|1|0.5|0.4|5|0|252; (*GB) gi|359483792|ref|XP_002264957.2| (e_value=3e-134) PREDICTED: aquaporin NIP1-2 [Vitis vinifera];; (*SWP) sp|Q40746|NIP11_ORYSJ (e_value=5e-112) Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1;; (*TAIR) AT4G18910.1 (e_value=5e-112) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294;; (*ITAG) Solyc03g005980.2.1 (e_value=3e-161) genomic_reference:SL2.40ch03 gene_region:659208-662352 transcript_region:SL2.40ch03:659208..662352- go_terms:GO:0015250 functional_description:"Transmembrane water channel aquaporin Z (AHRD V1 **** Q3KGD7_PSEPF); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00007364g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|254692064|emb|CBA10126.1| (e_value=3e-138) PME inhibitor [Nicotiana benthamiana];; (*SWP) sp|P17407|21KD_DAUCA (e_value=4e-44) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62360.1 (e_value=7e-62) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25040699-25041310 FORWARD LENGTH=203;; (*ITAG) Solyc03g083770.1.1 (e_value=4e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:47251746-47252348 transcript_region:SL2.40ch03:47251746..47252348+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00007364g0006.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|0|0.5|2|0|85; (*GB) gi|255539739|ref|XP_002510934.1| (e_value=2e-15) 21 kDa protein precursor, putative [Ricinus communis];; (*ITAG) Solyc03g083720.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:47202120-47202749 transcript_region:SL2.40ch03:47202120..47202749- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00004165g0006.1 protein AED:0.20 eAED:0.20 QI:157|0.91|0.92|1|0.75|0.69|13|50|551; (*GB) gi|225457759|ref|XP_002263592.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Vitis vinifera];; (*SWP) sp|O49048|VPS45_ARATH (e_value=0.0) Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2;; (*TAIR) AT1G77140.1 (e_value=0.0) | Symbols: VPS45, ATVPS45 | vacuolar protein sorting 45 | chr1:28984163-28987681 FORWARD LENGTH=569;; (*ITAG) Solyc04g064820.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55103846-55119443 transcript_region:SL2.40ch04:55103846..55119443+ go_terms:GO:0051082,GO:0000149 functional_description:"Vacuolar protein-sorting protein 45 (AHRD V1 ***- B6UDC0_MAIZE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0051082,GO:0000149 NbS00010560g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|167; (*GB) gi|130271|sp|P17340.1|PLAS_SOLLC (e_value=1e-78) RecName: Full=Plastocyanin, chloroplastic; Flags: Precursor;; (*SWP) sp|P17340|PLAS_SOLLC (e_value=4e-80) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G76100.1 (e_value=2e-69) | Symbols: PETE1 | plastocyanin 1 | chr1:28554217-28554732 REVERSE LENGTH=171;; (*ITAG) Solyc04g082010.1.1 (e_value=2e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- go_terms:GO:0009055 functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "; GO:0009055 NbS00024518g0006.1 protein AED:0.16 eAED:0.16 QI:210|0.8|0.83|1|0.2|0.33|6|197|175; (*GB) gi|371501276|dbj|BAL44265.1| (e_value=4e-117) ADP-ribosylation factor-like 8d [Nicotiana tabacum];; (*SWP) sp|Q66HA6|ARL8B_RAT (e_value=8e-75) ADP-ribosylation factor-like protein 8B OS=Rattus norvegicus GN=Arl8b PE=2 SV=1;; (*TAIR) AT5G37680.1 (e_value=1e-114) | Symbols: ATARLA1A, ARLA1A | ADP-ribosylation factor-like A1A | chr5:14969797-14971098 REVERSE LENGTH=184;; (*ITAG) Solyc11g011040.1.1 (e_value=9e-120) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4089589-4094356 transcript_region:SL2.40ch11:4089589..4094356- go_terms:GO:0015031,GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor-like protein (AHRD V1 ***- Q8W4C8_ARATH); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0015031,GO:0005525,GO:0005622 NbS00003812g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|101; (*GB) gi|351720975|ref|NP_001237706.1| (e_value=1e-59) uncharacterized protein LOC100306111 [Glycine max];; (*TAIR) AT4G16450.2 (e_value=2e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. | chr4:9280132-9280541 FORWARD LENGTH=106;; (*ITAG) Solyc07g065280.2.1 (e_value=6e-65) genomic_reference:SL2.40ch07 gene_region:64327845-64329026 transcript_region:SL2.40ch07:64327845..64329026- functional_description:"Os08g0431500 protein (Fragment) (AHRD V1 ***- Q0J5I8_ORYSJ)"; NbS00000928g0001.1 protein AED:0.07 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|295|177; (*GB) gi|225446615|ref|XP_002280666.1| (e_value=3e-93) PREDICTED: uncharacterized protein LOC100266079 [Vitis vinifera];; (*TAIR) AT2G42610.2 (e_value=3e-87) | Symbols: LSH10 | Protein of unknown function (DUF640) | chr2:17748005-17748538 FORWARD LENGTH=177;; (*ITAG) Solyc02g076820.2.1 (e_value=1e-90) genomic_reference:SL2.40ch02 gene_region:36519341-36525157 transcript_region:SL2.40ch02:36519341..36525157+ functional_description:"Light-dependent short hypocotyls 1 (AHRD V1 ***- D7M6V0_ARALY); contains Interpro domain(s) IPR006936 Protein of unknown function DUF640 "; NbS00003987g0012.1 protein AED:0.14 eAED:0.14 QI:0|0.71|0.5|1|0.85|1|8|0|431; (*GB) gi|255570400|ref|XP_002526159.1| (e_value=0.0) serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=0.0) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1;; (*TAIR) AT5G42240.1 (e_value=0.0) | Symbols: scpl42 | serine carboxypeptidase-like 42 | chr5:16888717-16890931 FORWARD LENGTH=473;; (*ITAG) Solyc01g104850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84939746-84943822 transcript_region:SL2.40ch01:84939746..84943822+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00003987g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|0.33|0.25|4|0|480; (*GB) gi|359497186|ref|XP_003635448.1| (e_value=5e-94) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera];; (*SWP) sp|Q9FIZ3|GSO2_ARATH (e_value=2e-52) LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2;; (*TAIR) AT5G44700.1 (e_value=2e-53) | Symbols: EDA23, GSO2 | Leucine-rich repeat transmembrane protein kinase | chr5:18033049-18036894 REVERSE LENGTH=1252;; (*ITAG) Solyc02g072400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00003987g0004.1 protein AED:0.38 eAED:0.38 QI:0|1|0.5|1|0|0|2|87|155; (*GB) gi|225469306|ref|XP_002269823.1| (e_value=8e-69) PREDICTED: ycf20-like protein isoform 2 [Vitis vinifera];; (*TAIR) AT5G43050.1 (e_value=6e-66) | Symbols: NPQ6 | Protein of unknown function (DUF565) | chr5:17268404-17268880 FORWARD LENGTH=158;; (*ITAG) Solyc02g072460.1.1 (e_value=8e-83) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:36236896-36237360 transcript_region:SL2.40ch02:36236896..36237360- functional_description:"Ycf20-like protein (AHRD V1 ***- YC20L_SYNY3); contains Interpro domain(s) IPR007572 Protein of unknown function DUF565 "; NbS00057482g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|255580537|ref|XP_002531093.1| (e_value=1e-69) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q9SZ46|C82C4_ARATH (e_value=6e-58) Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=5e-59) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc09g059240.2.1 (e_value=2e-101) genomic_reference:SL2.40ch09 gene_region:49476854-49479960 transcript_region:SL2.40ch09:49476854..49479960+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009580g0016.1 protein AED:0.07 eAED:0.07 QI:20|0|0|1|1|0.5|2|0|1070; (*GB) gi|225442773|ref|XP_002280900.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248030 [Vitis vinifera];; (*TAIR) AT1G52780.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF2921) | chr1:19658846-19662025 FORWARD LENGTH=1059;; (*ITAG) Solyc03g119920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62514265-62517420 transcript_region:SL2.40ch03:62514265..62517420- functional_description:"Unknown Protein (AHRD V1)"; NbS00009580g0019.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|177; (*GB) gi|4514716|dbj|BAA75495.1| (e_value=8e-74) NtEPc [Nicotiana tabacum];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=2e-25) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT3G18590.1 (e_value=7e-52) | Symbols: ENODL5, AtENODL5 | early nodulin-like protein 5 | chr3:6398670-6399337 FORWARD LENGTH=188;; (*ITAG) Solyc03g119880.2.1 (e_value=8e-77) genomic_reference:SL2.40ch03 gene_region:62476615-62477222 transcript_region:SL2.40ch03:62476615..62477222+ go_terms:GO:0009055,GO:0055114 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055,GO:0055114 NbS00009580g0003.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|92; (*GB) gi|134303282|gb|ABO70984.1| (e_value=4e-53) gibberellin 3-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=3e-35) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=3e-36) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=4e-50) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00009580g0014.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|1|1|2|0|135; (*GB) gi|134303282|gb|ABO70984.1| (e_value=3e-67) gibberellin 3-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=1e-33) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=1e-34) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=5e-59) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00009580g0013.1 protein AED:0.78 eAED:0.92 QI:0|0|0|0.5|1|1|2|0|148; (*GB) gi|20149243|gb|AAM12872.1|AF494089_1 (e_value=1e-16) gibberellin 3-oxidase 1 [Nicotiana sylvestris];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=2e-13) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=1e-14) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc03g119910.2.1 (e_value=3e-19) genomic_reference:SL2.40ch03 gene_region:62510868-62512249 transcript_region:SL2.40ch03:62510868..62512249+ go_terms:GO:0016707 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 **** D9ZZW4_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016707 NbS00009580g0020.1 protein AED:0.09 eAED:0.20 QI:0|0|0|1|0|0|3|0|386; (*GB) gi|2653671|gb|AAC15893.1| (e_value=4e-23) 120 kDa style glycoprotein [Nicotiana alata]; NbC26229140g0003.1 protein AED:0.08 eAED:0.08 QI:0|1|0.6|1|1|1|5|0|189; (*GB) gi|224101875|ref|XP_002312455.1| (e_value=2e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAB8|PXG5_ARATH (e_value=9e-65) Probable peroxygenase 5 OS=Arabidopsis thaliana GN=PXG5 PE=2 SV=1;; (*TAIR) AT1G70680.1 (e_value=7e-66) | Symbols: | Caleosin-related family protein | chr1:26647341-26648541 FORWARD LENGTH=192;; (*ITAG) Solyc01g005410.2.1 (e_value=1e-112) genomic_reference:SL2.40ch01 gene_region:286564-290172 transcript_region:SL2.40ch01:286564..290172+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00020720g0013.1 protein AED:0.02 eAED:0.09 QI:342|0.5|0.33|1|0.5|0|3|0|533; (*GB) gi|225444009|ref|XP_002281463.1| (e_value=0.0) PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q84MA5|CAAT1_ARATH (e_value=0.0) Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1;; (*TAIR) AT4G21120.1 (e_value=0.0) | Symbols: AAT1, CAT1 | amino acid transporter 1 | chr4:11270318-11273775 FORWARD LENGTH=594;; (*ITAG) Solyc12g096380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63664488-63666843 transcript_region:SL2.40ch12:63664488..63666843- go_terms:GO:0005289,GO:0015326 functional_description:"High affinity cationic amino acid transporter 1 (AHRD V1 **** CTR1_MOUSE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0005289,GO:0015326 NbS00020720g0012.1 protein AED:0.21 eAED:0.22 QI:0|0.76|0.71|1|0.69|0.71|14|0|1016; (*GB) gi|2582381|gb|AAC49874.1| (e_value=0.0) cation-chloride co-transporter [Nicotiana tabacum];; (*SWP) sp|Q2UVJ5|CCC1_ARATH (e_value=0.0) Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1;; (*TAIR) AT1G30450.2 (e_value=0.0) | Symbols: CCC1, ATCCC1, HAP5 | cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975;; (*ITAG) Solyc02g021620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13996231-14017788 transcript_region:SL2.40ch02:13996231..14017788+ go_terms:GO:0015379 functional_description:"Solute carrier family 12 (Potassium/chloride transporters) member 6 (AHRD V1 **-* A0AV76_HUMAN); contains Interpro domain(s) IPR004842 Na/K/Cl co-transporter superfamily "; GO:0015379 NbS00007591g0005.1 protein AED:0.06 eAED:0.06 QI:74|1|1|1|0.8|0.83|6|162|367; (*GB) gi|1072390|emb|CAA63753.1| (e_value=0.0) cyclin A-like protein [Nicotiana tabacum];; (*SWP) sp|Q9FMH5|CCA31_ARATH (e_value=2e-147) Putative cyclin-A3-1 OS=Arabidopsis thaliana GN=CYCA3-1 PE=3 SV=1;; (*TAIR) AT1G47230.1 (e_value=6e-149) | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306752-17308587 FORWARD LENGTH=369;; (*ITAG) Solyc12g088530.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62294192-62296328 transcript_region:SL2.40ch12:62294192..62296328+ go_terms:GO:0005634 functional_description:"Cyclin A-like protein (AHRD V1 ***- Q40492_TOBAC); contains Interpro domain(s) IPR015453 G2/mitotic-specific cyclin A "; GO:0005634 NbS00050315g0002.1 protein AED:0.75 eAED:0.76 QI:0|0.33|0|0.5|0|0.25|4|0|112 NbS00025612g0001.1 protein AED:0.04 eAED:0.04 QI:517|1|1|1|0.33|0.25|4|590|327; (*GB) gi|225436773|ref|XP_002267732.1| (e_value=3e-111) PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera];; (*SWP) sp|Q7ZV00|OTU6B_DANRE (e_value=1e-33) OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1;; (*TAIR) AT3G62940.3 (e_value=1e-101) | Symbols: | Cysteine proteinases superfamily protein | chr3:23263106-23264245 REVERSE LENGTH=332;; (*ITAG) Solyc04g053080.2.1 (e_value=6e-125) genomic_reference:SL2.40ch04 gene_region:50582502-50584310 transcript_region:SL2.40ch04:50582502..50584310- go_terms:GO:0008234 functional_description:"OTU domain-containing protein 6B (AHRD V1 ***- B6TYC6_MAIZE); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbC24225248g0001.1 protein AED:0.11 eAED:0.42 QI:87|0|0|1|0|0|2|0|55; (*GB) gi|351727957|ref|NP_001238714.1| (e_value=1e-20) uncharacterized protein LOC100305917 [Glycine max];; (*TAIR) AT5G23535.1 (e_value=7e-19) | Symbols: | KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159;; (*ITAG) Solyc08g075850.2.1 (e_value=3e-24) genomic_reference:SL2.40ch08 gene_region:57094012-57098518 transcript_region:SL2.40ch08:57094012..57098518- go_terms:GO:0005515 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- Q9LT09_ARATH); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005515 NbS00025745g0003.1 protein AED:0.23 eAED:0.23 QI:159|0.90|0.91|1|0.54|0.58|12|10|484; (*GB) gi|225470565|ref|XP_002272060.1| (e_value=0.0) PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8RY46|AB26B_ARATH (e_value=0.0) ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1;; (*TAIR) AT1G70610.1 (e_value=0.0) | Symbols: ATTAP1, TAP1 | transporter associated with antigen processing protein 1 | chr1:26622086-26626331 FORWARD LENGTH=700;; (*ITAG) Solyc12g070270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:55455072-55471983 transcript_region:SL2.40ch12:55455072..55471983+ go_terms:GO:0005215 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0005215 NbS00013027g0012.1 protein AED:0.00 eAED:0.00 QI:260|1|1|1|1|1|2|202|254; (*GB) gi|255538274|ref|XP_002510202.1| (e_value=8e-54) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SND4|HEC2_ARATH (e_value=3e-40) Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1;; (*TAIR) AT3G50330.1 (e_value=3e-41) | Symbols: HEC2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:18657423-18658118 REVERSE LENGTH=231;; (*ITAG) Solyc04g078790.2.1 (e_value=2e-89) genomic_reference:SL2.40ch04 gene_region:61052134-61053446 transcript_region:SL2.40ch04:61052134..61053446+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor-like (AHRD V1 *--- Q8S0N2_ORYSJ); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00013027g0017.1 protein AED:0.06 eAED:0.06 QI:22|0.5|0.33|1|0.5|0.33|3|0|371; (*GB) gi|255538270|ref|XP_002510200.1| (e_value=4e-128) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C635|HSFB4_ARATH (e_value=7e-91) Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1;; (*TAIR) AT1G46264.1 (e_value=5e-92) | Symbols: AT-HSFB4, HSFB4, SCZ | heat shock transcription factor B4 | chr1:17224904-17226183 FORWARD LENGTH=348;; (*ITAG) Solyc04g078770.2.1 (e_value=2e-147) genomic_reference:SL2.40ch04 gene_region:61036586-61037903 transcript_region:SL2.40ch04:61036586..61037903+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00013027g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.87|0.77|1|0.75|0.66|9|756|308; (*GB) gi|225458641|ref|XP_002284832.1| (e_value=2e-129) PREDICTED: WD repeat-containing protein 18 [Vitis vinifera];; (*SWP) sp|Q3SZD4|WDR18_BOVIN (e_value=2e-29) WD repeat-containing protein 18 OS=Bos taurus GN=WDR18 PE=2 SV=1;; (*TAIR) AT3G49180.1 (e_value=8e-118) | Symbols: RID3 | Transducin/WD40 repeat-like superfamily protein | chr3:18229810-18231874 FORWARD LENGTH=438;; (*ITAG) Solyc04g078780.2.1 (e_value=6e-172) genomic_reference:SL2.40ch04 gene_region:61041799-61046513 transcript_region:SL2.40ch04:61041799..61046513+ go_terms:GO:0000166 functional_description:"WD repeat protein 18 (AHRD V1 **-- B0WSI0_CULQU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00019943g0012.1 protein AED:0.08 eAED:0.08 QI:243|0.66|0.85|1|0.5|0.57|7|309|746; (*GB) gi|359492818|ref|XP_002284291.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257505 isoform 1 [Vitis vinifera];; (*TAIR) AT4G08550.1 (e_value=0.0) | Symbols: | electron carriers;protein disulfide oxidoreductases | chr4:5444345-5446825 FORWARD LENGTH=637;; (*ITAG) Solyc04g072380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57005291-57010908 transcript_region:SL2.40ch04:57005291..57010908+ go_terms:GO:0023034,GO:0045454 functional_description:"Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 2 protein (AHRD V1 *--- PREX2_MOUSE); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00019943g0009.1 protein AED:0.26 eAED:0.27 QI:183|0.5|0.28|1|0.5|0.57|7|0|433; (*GB) gi|225459407|ref|XP_002285817.1| (e_value=9e-171) PREDICTED: uncharacterized protein At4g37920, chloroplastic [Vitis vinifera];; (*SWP) sp|Q84WN0|Y4920_ARATH (e_value=7e-88) Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2;; (*TAIR) AT1G36320.1 (e_value=1e-152) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:13671876-13673939 FORWARD LENGTH=414;; (*ITAG) Solyc04g072400.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57015439-57020648 transcript_region:SL2.40ch04:57015439..57020648+ functional_description:"Endoribonuclease E-like protein (AHRD V1 **-- Q656E2_ORYSJ)"; NbS00018270g0005.1 protein AED:0.20 eAED:0.20 QI:83|1|1|1|0.5|0.4|5|443|373; (*GB) gi|357446949|ref|XP_003593750.1| (e_value=0.0) hypothetical protein MTR_2g015720 [Medicago truncatula];; (*TAIR) AT2G34070.1 (e_value=4e-178) | Symbols: TBL37 | TRICHOME BIREFRINGENCE-LIKE 37 | chr2:14387631-14390160 REVERSE LENGTH=385;; (*ITAG) Solyc02g077080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36713146-36717503 transcript_region:SL2.40ch02:36713146..36717503+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00039286g0003.1 protein AED:0.30 eAED:0.30 QI:448|0.57|0.62|0.87|0.14|0.25|8|477|118; (*GB) gi|356548309|ref|XP_003542545.1| (e_value=5e-54) PREDICTED: delta(14)-sterol reductase-like [Glycine max];; (*SWP) sp|Q9LDR4|ERG24_ARATH (e_value=7e-52) Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2;; (*TAIR) AT3G52940.1 (e_value=5e-53) | Symbols: FK, HYD2, ELL1 | Ergosterol biosynthesis ERG4/ERG24 family | chr3:19630369-19633112 REVERSE LENGTH=369;; (*ITAG) Solyc09g009040.2.1 (e_value=8e-56) genomic_reference:SL2.40ch09 gene_region:2385547-2393745 transcript_region:SL2.40ch09:2385547..2393745+ go_terms:GO:0050613 functional_description:"Delta14-sterol reductase (AHRD V1 **** E1AQY4_SOLLC); contains Interpro domain(s) IPR001171 Ergosterol biosynthesis ERG4/ERG24 "; GO:0050613 NbS00057678g0001.1 protein AED:0.28 eAED:0.36 QI:0|0|0|0.33|1|1|3|0|282 NbS00012294g0001.1 protein AED:0.07 eAED:0.08 QI:0|1|0|1|1|1|2|0|410; (*GB) gi|255543541|ref|XP_002512833.1| (e_value=3e-45) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G13310.1 (e_value=2e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4263561-4264989 FORWARD LENGTH=370;; (*ITAG) Solyc04g024520.2.1 (e_value=7e-144) genomic_reference:SL2.40ch04 gene_region:13142206-13146433 transcript_region:SL2.40ch04:13142206..13146433+ functional_description:"AT5g13970/MAC12_6 (AHRD V1 ***- Q9FFX8_ARATH)"; NbS00012294g0010.1 protein AED:0.05 eAED:0.05 QI:36|1|1|1|1|0.92|14|634|1320; (*GB) gi|297738875|emb|CBI28120.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=2e-165) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=0.0) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00038707g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|3|0|509; (*GB) gi|225447562|ref|XP_002269867.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SZ10|PP338_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1;; (*TAIR) AT4G26680.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13454853-13456418 FORWARD LENGTH=521;; (*ITAG) Solyc07g047620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56184122-56185714 transcript_region:SL2.40ch07:56184122..56185714- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00028158g0002.1 protein AED:0.09 eAED:0.09 QI:155|1|1|1|0|0|3|508|243; (*GB) gi|225454424|ref|XP_002280136.1| (e_value=9e-98) PREDICTED: uncharacterized protein LOC100258561 [Vitis vinifera];; (*TAIR) AT4G05400.2 (e_value=1e-76) | Symbols: | copper ion binding | chr4:2741256-2742008 FORWARD LENGTH=250;; (*ITAG) Solyc01g095420.2.1 (e_value=3e-150) genomic_reference:SL2.40ch01 gene_region:78437977-78440511 transcript_region:SL2.40ch01:78437977..78440511- go_terms:GO:0005507 functional_description:"Unknown Protein (AHRD V1)"; GO:0005507 NbS00028158g0015.1 protein AED:0.44 eAED:0.54 QI:0|0.75|0.4|1|1|1|5|0|169; (*GB) gi|388500696|gb|AFK38414.1| (e_value=1e-63) unknown [Lotus japonicus];; (*SWP) sp|O04616|Y4115_ARATH (e_value=4e-59) Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1;; (*TAIR) AT4G01150.1 (e_value=3e-60) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164;; (*ITAG) Solyc01g095430.2.1 (e_value=2e-86) genomic_reference:SL2.40ch01 gene_region:78441004-78444296 transcript_region:SL2.40ch01:78441004..78444296- functional_description:"Threonine endopeptidase (AHRD V1 **-- B6TCN7_MAIZE)"; NbS00028158g0014.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0.5|2|0|136; (*GB) gi|388503528|gb|AFK39830.1| (e_value=4e-58) unknown [Lotus japonicus];; (*SWP) sp|P56331|IF1A_ONOVI (e_value=5e-58) Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2;; (*TAIR) AT2G04520.1 (e_value=4e-59) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:1574802-1575239 REVERSE LENGTH=145;; (*ITAG) Solyc05g050200.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:59394632-59396589 transcript_region:SL2.40ch05:59394632..59396589+ go_terms:GO:0003743 functional_description:"Eukaryotic translation initiation factor 1A (AHRD V1 **** Q7Y1V3_ORYSJ); contains Interpro domain(s) IPR001253 Translation initiation factor 1A (eIF-1A) "; GO:0003743 NbS00018265g0011.1 protein AED:0.23 eAED:0.23 QI:1229|0.92|0.92|0.96|0.62|0.67|28|392|1364; (*GB) gi|359473493|ref|XP_002268761.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: protein PHYLLO, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q15KI9|PHYLO_ARATH (e_value=0.0) Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2;; (*TAIR) AT1G68890.1 (e_value=0.0) | Symbols: | magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases | chr1:25896988-25906553 FORWARD LENGTH=1715;; (*ITAG) Solyc04g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:130395-145641 transcript_region:SL2.40ch04:130395..145641+ go_terms:GO:0009063,GO:0009234 functional_description:"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (AHRD V1 *-*- D5A2Q7_SPIPL); contains Interpro domain(s) IPR004433 Menaquinone biosynthesis protein "; GO:0009063,GO:0009234 NbS00017604g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|700; (*GB) gi|225441082|ref|XP_002264567.1| (e_value=0.0) PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera];; (*SWP) sp|Q8WUQ7|CS029_HUMAN (e_value=2e-58) Uncharacterized protein C19orf29 OS=Homo sapiens GN=C19orf29 PE=1 SV=3;; (*TAIR) AT1G03910.1 (e_value=0.0) | Symbols: | EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). | chr1:996432-1000231 FORWARD LENGTH=672;; (*ITAG) Solyc10g085410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63930627-63932669 transcript_region:SL2.40ch10:63930627..63932669+ functional_description:"Cactin (AHRD V1 ***- A1L014_RAT); contains Interpro domain(s) IPR019134 Cactin protein, cactus-binding domain, C-terminal "; NbS00002551g0009.1 protein AED:0.22 eAED:0.22 QI:190|0|0.66|0.66|0|0.33|3|104|96 NbS00002551g0007.1 protein AED:0.26 eAED:0.26 QI:256|1|1|1|1|1|3|557|244; (*GB) gi|255568388|ref|XP_002525168.1| (e_value=2e-110) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B4FUS3|CNR8_MAIZE (e_value=7e-92) Cell number regulator 8 OS=Zea mays GN=CNR8 PE=2 SV=1;; (*TAIR) AT2G37110.1 (e_value=3e-99) | Symbols: | PLAC8 family protein | chr2:15592689-15593726 FORWARD LENGTH=242;; (*ITAG) Solyc10g084260.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63201508-63204679 transcript_region:SL2.40ch10:63201508..63204679- functional_description:"Cell number regulator 8 (AHRD V1 **-- B4FUS3_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00002551g0008.1 protein AED:0.35 eAED:0.36 QI:216|1|0.5|1|0|0|2|0|82 NbS00044078g0006.1 protein AED:0.19 eAED:0.19 QI:808|0|0.5|0.5|0|0.5|2|0|107 NbS00044078g0002.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|388; (*GB) gi|255568657|ref|XP_002525302.1| (e_value=8e-125) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SY57|P2A10_ARATH (e_value=1e-111) Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1;; (*TAIR) AT1G10150.1 (e_value=9e-113) | Symbols: | Carbohydrate-binding protein | chr1:3326160-3327404 FORWARD LENGTH=414;; (*ITAG) Solyc02g092140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47909832-47911085 transcript_region:SL2.40ch02:47909832..47911085- functional_description:"Phloem protein (Fragment) (AHRD V1 *--- C6FDA1_PSEMZ)"; NbS00045780g0008.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|646; (*GB) gi|224115632|ref|XP_002332104.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGU0|RLK_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1;; (*TAIR) AT5G35390.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:13596918-13598976 FORWARD LENGTH=662;; (*ITAG) Solyc08g069170.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55433059-55438514 transcript_region:SL2.40ch08:55433059..55438514+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00045780g0011.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|1|2|375|352; (*GB) gi|224115628|ref|XP_002332103.1| (e_value=5e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G31270.1 (e_value=1e-40) | Symbols: | sequence-specific DNA binding transcription factors | chr4:15183291-15184503 REVERSE LENGTH=294;; (*ITAG) Solyc08g069160.2.1 (e_value=5e-174) genomic_reference:SL2.40ch08 gene_region:55424910-55430257 transcript_region:SL2.40ch08:55424910..55430257+ go_terms:GO:0003700 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbS00058954g0002.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|0.5|2|0|95; (*GB) gi|296086263|emb|CBI31704.3| (e_value=4e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G12590.1 (e_value=2e-19) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:3996473-4003657 REVERSE LENGTH=1184;; (*ITAG) Solyc06g042980.2.1 (e_value=1e-33) genomic_reference:SL2.40ch06 gene_region:25370965-25372617 transcript_region:SL2.40ch06:25370965..25372617- functional_description:"Genomic DNA chromosome 3 P1 clone MMF12 (AHRD V1 ***- Q9LHK2_ARATH)"; NbS00016492g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|255585779|ref|XP_002533569.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g092100.1.1 (e_value=3e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47886009-47886380 transcript_region:SL2.40ch02:47886009..47886380- go_terms:GO:0016021 functional_description:"Unknown Protein (AHRD V1)"; GO:0016021 NbS00027633g0013.1 protein AED:0.09 eAED:0.10 QI:0|0.5|0.33|1|0.5|0.66|3|0|137; (*GB) gi|66096352|gb|AAY42864.1| (e_value=9e-75) thioredoxin H [Nicotiana alata];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=2e-49) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=2e-50) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc02g087630.2.1 (e_value=3e-59) genomic_reference:SL2.40ch02 gene_region:44583542-44584495 transcript_region:SL2.40ch02:44583542..44584495- go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00027633g0012.1 protein AED:0.18 eAED:0.19 QI:35|0.8|0.72|1|0.8|0.81|11|0|546; (*GB) gi|225452686|ref|XP_002276826.1| (e_value=0.0) PREDICTED: protein midA, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9VGR2|MIDA_DROME (e_value=3e-75) Protein midA homolog, mitochondrial OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1;; (*TAIR) AT3G28700.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF185) | chr3:10759580-10761834 FORWARD LENGTH=471;; (*ITAG) Solyc02g087640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44585290-44590007 transcript_region:SL2.40ch02:44585290..44590007- go_terms:GO:0005515,GO:0008270 functional_description:"Protein midA homolog, mitochondrial (AHRD V1 **-- MIDA_DANRE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; GO:0005515,GO:0008270 NbS00027633g0001.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|1|1|2|0|277; (*GB) gi|356526882|ref|XP_003532045.1| (e_value=2e-112) PREDICTED: uncharacterized protein LOC100785006 [Glycine max];; (*TAIR) AT3G28630.1 (e_value=4e-101) | Symbols: | Protein of unknown function (DUF569) | chr3:10729065-10730564 FORWARD LENGTH=335;; (*ITAG) Solyc02g087580.2.1 (e_value=8e-164) genomic_reference:SL2.40ch02 gene_region:44548500-44552413 transcript_region:SL2.40ch02:44548500..44552413+ functional_description:"cDNA clone J023121M11 full insert sequence (AHRD V1 *--- B7F743_ORYSJ); contains Interpro domain(s) IPR007679 Protein of unknown function DUF569 "; NbS00027633g0017.1 protein AED:0.13 eAED:0.13 QI:195|0.96|0.93|1|0.96|0.93|31|212|1086; (*GB) gi|359488777|ref|XP_002282227.2| (e_value=0.0) PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1-like [Vitis vinifera];; (*SWP) sp|A7Z050|VIP1_BOVIN (e_value=0.0) Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 OS=Bos taurus GN=PPIP5K1 PE=2 SV=1;; (*TAIR) AT5G15070.1 (e_value=0.0) | Symbols: | Phosphoglycerate mutase-like family protein | chr5:4876898-4885615 FORWARD LENGTH=1049;; (*ITAG) Solyc02g087620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44563220-44582860 transcript_region:SL2.40ch02:44563220..44582860+ go_terms:GO:0033187 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (AHRD V1 **-* VIP2_MOUSE); contains Interpro domain(s) IPR000560 Histidine acid phosphatase "; GO:0033187 NbS00027633g0005.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|489; (*GB) gi|296087773|emb|CBI35029.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJI9|PP260_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1;; (*TAIR) AT3G28660.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:10739400-10740914 REVERSE LENGTH=504;; (*ITAG) Solyc02g087610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44557619-44559157 transcript_region:SL2.40ch02:44557619..44559157+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LM18_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00023770g0011.1 protein AED:0.09 eAED:0.09 QI:78|0.4|0.66|1|0.4|0.66|6|185|486; (*GB) gi|147856617|emb|CAN82473.1| (e_value=3e-86) hypothetical protein VITISV_030202 [Vitis vinifera];; (*SWP) sp|Q9SRM9|ALMT8_ARATH (e_value=5e-71) Aluminum-activated malate transporter 8 OS=Arabidopsis thaliana GN=ALMT8 PE=3 SV=1;; (*TAIR) AT3G11680.1 (e_value=4e-72) | Symbols: | Aluminium activated malate transporter family protein | chr3:3686995-3689329 REVERSE LENGTH=488;; (*ITAG) Solyc01g007080.2.1 (e_value=4e-130) genomic_reference:SL2.40ch01 gene_region:1629115-1634158 transcript_region:SL2.40ch01:1629115..1634158- go_terms:GO:0015140 functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--* Q071L4_AVESA); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0015140 NbS00023770g0012.1 protein AED:0.77 eAED:0.77 QI:0|0|0|0.5|0|0|2|0|76 NbS00025648g0007.1 protein AED:0.18 eAED:0.18 QI:177|0.8|0.66|1|0.4|0.33|6|314|365; (*GB) gi|225434550|ref|XP_002277229.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263882 [Vitis vinifera];; (*TAIR) AT5G58600.1 (e_value=5e-152) | Symbols: PMR5, TBL44 | Plant protein of unknown function (DUF828) | chr5:23683944-23685679 REVERSE LENGTH=402;; (*ITAG) Solyc06g007170.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1231308-1237447 transcript_region:SL2.40ch06:1231308..1237447+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00025648g0002.1 protein AED:0.12 eAED:0.12 QI:39|0.8|0.72|1|0.9|0.90|11|0|449; (*GB) gi|225434548|ref|XP_002277103.1| (e_value=0.0) PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Vitis vinifera];; (*SWP) sp|O24661|ASNS_TRIVS (e_value=0.0) Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3;; (*TAIR) AT3G47340.1 (e_value=0.0) | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent asparagine synthase 1 | chr3:17438136-17441043 REVERSE LENGTH=584;; (*ITAG) Solyc06g007180.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1237837-1242525 transcript_region:SL2.40ch06:1237837..1242525- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** A9EDI4_9FLAO); contains Interpro domain(s) IPR006426 Asparagine synthase, glutamine-hydrolyzing "; GO:0004066,GO:0042803 NbS00041000g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|578; (*GB) gi|9652186|gb|AAF91432.1|AF280432_1 (e_value=0.0) putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum];; (*SWP) sp|O23492|INT4_ARATH (e_value=0.0) Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1;; (*TAIR) AT4G16480.1 (e_value=0.0) | Symbols: ATINT4, INT4 | inositol transporter 4 | chr4:9291246-9293083 FORWARD LENGTH=582;; (*ITAG) Solyc12g099070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64693633-64695996 transcript_region:SL2.40ch12:64693633..64695996+ go_terms:GO:0016020,GO:0016021,GO:0006810 functional_description:"Transporter (AHRD V1 *-*- D1RW43_SEROD); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021,GO:0006810 NbS00041000g0002.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|3|0|352; (*GB) gi|255544031|ref|XP_002513078.1| (e_value=6e-42) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=4e-29) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=3e-30) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc12g099040.1.1 (e_value=3e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64684139-64686182 transcript_region:SL2.40ch12:64684139..64686182+ go_terms:GO:0008022,GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0008022,GO:0019903 NbS00029257g0005.1 protein AED:0.22 eAED:0.22 QI:42|1|0|1|1|0.5|2|0|55; (*GB) gi|356532784|ref|XP_003534950.1| (e_value=3e-14) PREDICTED: nudix hydrolase 2-like [Glycine max];; (*ITAG) Solyc05g054230.2.1 (e_value=5e-22) genomic_reference:SL2.40ch05 gene_region:63334861-63342158 transcript_region:SL2.40ch05:63334861..63342158- go_terms:GO:0008083 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008083 NbS00023245g0012.1 protein AED:0.10 eAED:0.12 QI:0|0.8|0.5|1|1|1|6|0|752; (*GB) gi|17865457|sp|O82150.2|FTSH_TOBAC (e_value=0.0) RecName: Full=ATP-dependent zinc metalloprotease FTSH, chloroplastic; AltName: Full=DS9; Flags: Precursor;; (*SWP) sp|O82150|FTSH_TOBAC (e_value=0.0) ATP-dependent zinc metalloprotease FTSH, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2;; (*TAIR) AT5G42270.1 (e_value=0.0) | Symbols: VAR1, FTSH5 | FtsH extracellular protease family | chr5:16902659-16905102 FORWARD LENGTH=704;; (*ITAG) Solyc04g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63573950-63577767 transcript_region:SL2.40ch04:63573950..63577767+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"ATP-dependent zinc metalloprotease FTSH, chloroplastic (Fragment) (AHRD V1 ***- FTSH_CAPAN); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00023245g0001.1 protein AED:0.26 eAED:0.26 QI:0|0.87|0.66|1|1|1|9|0|501; (*GB) gi|147797812|emb|CAN74078.1| (e_value=0.0) hypothetical protein VITISV_000979 [Vitis vinifera];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=0.0) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT4G35230.1 (e_value=0.0) | Symbols: BSK1 | BR-signaling kinase 1 | chr4:16755325-16758041 REVERSE LENGTH=512;; (*ITAG) Solyc04g082260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63577253-63583094 transcript_region:SL2.40ch04:63577253..63583094- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor protein kinase-like protein (AHRD V1 *-** Q9LRY1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00023245g0018.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|0.6|0.5|6|0|370; (*ITAG) Solyc06g008150.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00039776g0004.1 protein AED:0.19 eAED:0.19 QI:102|1|1|1|0.8|0.66|6|360|220; (*GB) gi|255560189|ref|XP_002521112.1| (e_value=2e-137) Vesicle-associated membrane protein, putative [Ricinus communis];; (*SWP) sp|O48850|VA725_ARATH (e_value=3e-129) Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2;; (*TAIR) AT2G32670.1 (e_value=2e-130) | Symbols: ATVAMP725, VAMP725 | vesicle-associated membrane protein 725 | chr2:13857941-13859346 FORWARD LENGTH=285;; (*ITAG) Solyc09g061620.2.1 (e_value=8e-147) genomic_reference:SL2.40ch09 gene_region:55703304-55707709 transcript_region:SL2.40ch09:55703304..55707709+ go_terms:GO:0005484 functional_description:"Vesicle-associated membrane protein 7B (AHRD V1 ***- D7KE73_ARALY); contains Interpro domain(s) IPR001388 Synaptobrevin "; GO:0005484 NbS00039776g0013.1 protein AED:0.19 eAED:0.19 QI:133|1|1|1|1|1|9|140|612; (*GB) gi|350540086|ref|NP_001234382.1| (e_value=0.0) nuclear GTPase-like [Solanum lycopersicum];; (*SWP) sp|Q54KS4|GNL3_DICDI (e_value=8e-105) Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1;; (*TAIR) AT3G07050.1 (e_value=0.0) | Symbols: | GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582;; (*ITAG) Solyc09g061430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54707523-54714483 transcript_region:SL2.40ch09:54707523..54714483+ go_terms:GO:0005515,GO:0005525 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 *-** B0WF29_CULQU); contains Interpro domain(s) IPR014813 GNL3L/Grn1 putative GTPase "; GO:0005515,GO:0005525 NbS00039776g0011.1 protein AED:0.02 eAED:0.02 QI:79|1|1|1|1|1|3|211|189; (*GB) gi|225464240|ref|XP_002267372.1| (e_value=3e-29) PREDICTED: uncharacterized protein At4g13200, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8LDV3|Y4320_ARATH (e_value=6e-28) Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana GN=At4g13200 PE=1 SV=2;; (*TAIR) AT4G13200.1 (e_value=5e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr4:7668292-7669166 REVERSE LENGTH=185;; (*ITAG) Solyc09g061440.2.1 (e_value=6e-48) genomic_reference:SL2.40ch09 gene_region:54714646-54719199 transcript_region:SL2.40ch09:54714646..54719199- functional_description:"Os04g0513000 protein (Fragment) (AHRD V1 *-*- Q0JBS2_ORYSJ)"; NbS00039776g0012.1 protein AED:0.20 eAED:0.20 QI:304|1|1|1|0.75|0.6|5|351|315; (*GB) gi|255560191|ref|XP_002521113.1| (e_value=7e-164) pantoate-beta-alanine ligase, putative [Ricinus communis];; (*SWP) sp|O24035|PANC_LOTJA (e_value=2e-158) Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3;; (*TAIR) AT5G48840.1 (e_value=1e-155) | Symbols: PANC, PTS, ATPTS | homolog of bacterial PANC | chr5:19803823-19805041 REVERSE LENGTH=310;; (*ITAG) Solyc09g061680.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:55748435-55751717 transcript_region:SL2.40ch09:55748435..55751717- go_terms:GO:0004592,GO:0042803 functional_description:"Pantothenate synthetase (AHRD V1 ***- D2C4V4_THENR); contains Interpro domain(s) IPR003721 Pantoate-beta-alanine ligase "; GO:0004592,GO:0042803 NbS00017743g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|379; (*GB) gi|357156674|ref|XP_003577537.1| (e_value=3e-101) PREDICTED: acetylajmalan esterase-like [Brachypodium distachyon];; (*SWP) sp|P0C8Z7|GDL91_ARATH (e_value=7e-93) GDSL esterase/lipase At1g28640 OS=Arabidopsis thaliana GN=At1g28640 PE=2 SV=1;; (*TAIR) AT1G28640.1 (e_value=3e-95) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10067563-10069109 REVERSE LENGTH=389;; (*ITAG) Solyc12g096620.1.1 (e_value=2e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63796435-63797577 transcript_region:SL2.40ch12:63796435..63797577- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00053053g0002.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|201; (*GB) gi|224080405|ref|XP_002306129.1| (e_value=2e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT1G75520.1 (e_value=4e-53) | Symbols: SRS5 | SHI-related sequence 5 | chr1:28351779-28353179 REVERSE LENGTH=346;; (*ITAG) Solyc10g054070.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50025386-50026900 transcript_region:SL2.40ch10:50025386..50026900+ functional_description:"Stylish 2b (AHRD V1 **-- D2KC74_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00025737g0003.1 protein AED:0.08 eAED:0.43 QI:0|0.5|0|1|0.5|0.33|3|0|249; (*GB) gi|225448882|ref|XP_002270667.1| (e_value=1e-28) PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Vitis vinifera];; (*TAIR) AT2G36690.1 (e_value=4e-26) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:15379930-15381987 FORWARD LENGTH=366;; (*ITAG) Solyc11g007890.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2114654-2117507 transcript_region:SL2.40ch11:2114654..2117507+ go_terms:GO:0016491,GO:0055114 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 4 (AHRD V1 **-- ACCO4_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00045299g0004.1 protein AED:0.13 eAED:0.13 QI:249|1|0.8|1|0.75|0.6|5|0|418; (*GB) gi|224129384|ref|XP_002320573.1| (e_value=0.0) bile acid:Na+ symporter family protein [Populus trichocarpa];; (*SWP) sp|O34524|YOCS_BACSU (e_value=1e-24) Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis (strain 168) GN=yocS PE=3 SV=1;; (*TAIR) AT3G25410.1 (e_value=0.0) | Symbols: | Sodium Bile acid symporter family | chr3:9214565-9216331 REVERSE LENGTH=431;; (*ITAG) Solyc09g055940.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:41844927-41847439 transcript_region:SL2.40ch09:41844927..41847439- go_terms:GO:0015370 functional_description:"Bile acid sodium symporter family protein (AHRD V1 **** D7L6U2_ARALY); contains Interpro domain(s) IPR002657 Bile acid:sodium symporter "; GO:0015370 NbS00003197g0011.1 protein AED:0.36 eAED:0.40 QI:90|0.37|0.44|0.88|0.37|0.44|9|0|322; (*GB) gi|24745880|dbj|BAC23035.1| (e_value=0.0) 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum];; (*SWP) sp|Q9MAK9|PS10B_ARATH (e_value=1e-179) 26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1;; (*TAIR) AT1G45000.1 (e_value=0.0) | Symbols: | AAA-type ATPase family protein | chr1:17009220-17011607 FORWARD LENGTH=399;; (*ITAG) Solyc01g109940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88527503-88532712 transcript_region:SL2.40ch01:88527503..88532712- go_terms:GO:0005524,GO:0017111,GO:0005737 functional_description:"26S protease regulatory subunit (AHRD V1 ***- C0NAB1_AJECG); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0005524,GO:0017111,GO:0005737 NbS00003197g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|856; (*GB) gi|359474779|ref|XP_002280183.2| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At4g39110-like [Vitis vinifera];; (*SWP) sp|Q9T020|Y4391_ARATH (e_value=0.0) Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1;; (*TAIR) AT4G39110.1 (e_value=0.0) | Symbols: | Malectin/receptor-like protein kinase family protein | chr4:18222483-18225119 REVERSE LENGTH=878;; (*ITAG) Solyc01g109950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88534564-88537518 transcript_region:SL2.40ch01:88534564..88537518+ go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00003197g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.66|0.75|1|0.66|0.75|4|160|446; (*GB) gi|225428394|ref|XP_002283631.1| (e_value=8e-124) PREDICTED: uncharacterized protein LOC100250419 [Vitis vinifera];; (*TAIR) AT4G39140.5 (e_value=3e-76) | Symbols: | RING/U-box superfamily protein | chr4:18229637-18231282 REVERSE LENGTH=429;; (*ITAG) Solyc10g054030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:49992844-49998485 transcript_region:SL2.40ch10:49992844..49998485+ go_terms:GO:0008270 functional_description:"AT2G21500 protein (Fragment) (AHRD V1 **-- B9DHX0_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00006219g0101.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|131 NbS00045344g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|223; (*GB) gi|255538050|ref|XP_002510090.1| (e_value=1e-44) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g077810.1.1 (e_value=1e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:60294924-60295664 transcript_region:SL2.40ch04:60294924..60295664+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009936g0010.1 protein AED:0.12 eAED:0.28 QI:66|0|0|1|0|0.5|2|0|109; (*ITAG) Solyc12g043140.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44266393-44269129 transcript_region:SL2.40ch12:44266393..44269129- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00009936g0006.1 protein AED:0.32 eAED:0.32 QI:0|0|0|0.28|0.5|0.57|7|0|316; (*GB) gi|113205399|gb|AAU90302.2| (e_value=8e-18) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-37) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00009936g0011.1 protein AED:0.33 eAED:0.40 QI:0|0.6|0.5|1|0.6|0.83|6|0|270; (*GB) gi|356499583|ref|XP_003518618.1| (e_value=6e-100) PREDICTED: phosphatidylinositol transfer protein CSR1-like [Glycine max];; (*TAIR) AT1G14820.3 (e_value=1e-94) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:5105237-5106793 REVERSE LENGTH=252;; (*ITAG) Solyc01g005270.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:199896-203454 transcript_region:SL2.40ch01:199896..203454- go_terms:GO:0005215 functional_description:"SEC14 cytosolic factor family protein (AHRD V1 **-- D7M8H6_ARALY); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbC25723818g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|225464910|ref|XP_002273491.1| (e_value=1e-91) PREDICTED: germin-like protein 9-3 [Vitis vinifera];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=6e-67) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT3G62020.1 (e_value=1e-37) | Symbols: GLP10 | germin-like protein 10 | chr3:22971443-22972192 REVERSE LENGTH=220;; (*ITAG) Solyc11g068590.1.1 (e_value=5e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50336707-50337318 transcript_region:SL2.40ch11:50336707..50337318- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbC25723818g0004.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|224131718|ref|XP_002328091.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q652P9|GL93_ORYSJ (e_value=1e-67) Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1;; (*TAIR) AT1G02335.1 (e_value=1e-35) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc11g068570.1.1 (e_value=2e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50334139-50334759 transcript_region:SL2.40ch11:50334139..50334759- go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein 1 (AHRD V1 ***- Q84XR7_MEDTR); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00008258g0002.1 protein AED:0.11 eAED:0.11 QI:140|1|1|1|0.55|0.5|10|195|492; (*GB) gi|225436687|ref|XP_002263127.1| (e_value=0.0) PREDICTED: fatty acyl-CoA reductase 3 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=0.0) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=0.0) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50025289-50030666 transcript_region:SL2.40ch11:50025289..50030666- go_terms:GO:0008152 functional_description:"Fatty acyl coA reductase (AHRD V1 ***- Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0008152 NbS00008258g0016.1 protein AED:0.19 eAED:0.19 QI:681|0.9|0.90|1|0.9|0.81|11|288|1076; (*GB) gi|225436685|ref|XP_002263076.1| (e_value=0.0) PREDICTED: protein HIRA [Vitis vinifera];; (*SWP) sp|Q652L2|HIRA_ORYSJ (e_value=0.0) Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2 SV=1;; (*TAIR) AT3G44530.2 (e_value=0.0) | Symbols: HIRA | homolog of histone chaperone HIRA | chr3:16116026-16121247 FORWARD LENGTH=1040;; (*ITAG) Solyc11g067200.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50040167-50048193 transcript_region:SL2.40ch11:50040167..50048193- go_terms:GO:0005634 functional_description:"Hira like protein (AHRD V1 **-- C1DXY4_9CHLO); contains Interpro domain(s) IPR011494 TUP1-like enhancer of split "; GO:0005634 NbS00008258g0023.1 protein AED:0.21 eAED:0.43 QI:89|0|0|1|0.5|0.33|3|0|176 NbS00008258g0020.1 protein AED:0.21 eAED:0.21 QI:687|0.88|0.9|1|0.88|1|10|212|320; (*GB) gi|147866709|emb|CAN82646.1| (e_value=0.0) hypothetical protein VITISV_030551 [Vitis vinifera];; (*SWP) sp|Q94A68|Y1669_ARATH (e_value=3e-22) Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1;; (*TAIR) AT2G27680.1 (e_value=0.0) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr2:11803981-11805965 REVERSE LENGTH=384;; (*ITAG) Solyc11g067160.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49978029-49981767 transcript_region:SL2.40ch11:49978029..49981767+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7LJ14_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00008258g0025.1 protein AED:0.34 eAED:0.34 QI:439|1|0.75|1|1|0.5|4|0|116; (*GB) gi|225436293|ref|XP_002265741.1| (e_value=2e-70) PREDICTED: uncharacterized protein LOC100246564 [Vitis vinifera];; (*TAIR) AT4G04190.2 (e_value=2e-67) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2024873-2026330 FORWARD LENGTH=184;; (*ITAG) Solyc11g067150.1.1 (e_value=9e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49971715-49974799 transcript_region:SL2.40ch11:49971715..49974799- functional_description:"Unknown Protein (AHRD V1)"; NbS00008258g0024.1 protein AED:0.46 eAED:0.56 QI:31|1|0|1|1|0.5|2|0|49; (*GB) gi|225436293|ref|XP_002265741.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100246564 [Vitis vinifera];; (*TAIR) AT4G04190.2 (e_value=1e-15) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2024873-2026330 FORWARD LENGTH=184;; (*ITAG) Solyc11g067150.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49971715-49974799 transcript_region:SL2.40ch11:49971715..49974799- functional_description:"Unknown Protein (AHRD V1)"; NbC25755356g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0|1|1|0.5|2|0|176; (*ITAG) Solyc05g012550.2.1 (e_value=1e-66) genomic_reference:SL2.40ch05 gene_region:5785174-5787462 transcript_region:SL2.40ch05:5785174..5787462+ functional_description:"Remorin family protein (AHRD V1 *-*- D7MUJ3_ARALY); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; NbS00001617g0004.1 protein AED:0.25 eAED:0.34 QI:0|0|0|1|0.5|0.6|5|0|495; (*GB) gi|225432612|ref|XP_002281683.1| (e_value=1e-29) PREDICTED: sugar transport protein 13 [Vitis vinifera];; (*SWP) sp|O04249|STP7_ARATH (e_value=6e-27) Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1;; (*TAIR) AT4G02050.1 (e_value=5e-28) | Symbols: STP7 | sugar transporter protein 7 | chr4:898387-900095 REVERSE LENGTH=513;; (*ITAG) Solyc04g051160.1.1 (e_value=1e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00021822g0002.1 protein AED:0.14 eAED:0.14 QI:273|0.91|0.76|1|0.91|0.84|13|0|510; (*GB) gi|347361138|gb|AEO86797.1| (e_value=0.0) cyclin [Camellia sinensis];; (*SWP) sp|Q9SFW6|CCB24_ARATH (e_value=2e-173) Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2;; (*TAIR) AT1G76310.1 (e_value=1e-174) | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630199 REVERSE LENGTH=431;; (*ITAG) Solyc04g082430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63679120-63682268 transcript_region:SL2.40ch04:63679120..63682268- go_terms:GO:0004721,GO:0016538 functional_description:"B-like cyclin (AHRD V1 **** Q40337_MEDSA); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00021822g0010.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|0.2|0|6|0|516; (*GB) gi|224065687|ref|XP_002301921.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q681N2|PUB15_ARATH (e_value=6e-173) U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2;; (*TAIR) AT5G42340.1 (e_value=4e-174) | Symbols: PUB15 | Plant U-Box 15 | chr5:16928086-16930367 REVERSE LENGTH=660;; (*ITAG) Solyc04g082440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63684002-63686801 transcript_region:SL2.40ch04:63684002..63686801+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00050473g0002.1 protein AED:0.30 eAED:0.30 QI:197|0.57|0.87|0.87|0.85|0.75|8|471|272; (*GB) gi|356499805|ref|XP_003518727.1| (e_value=3e-74) PREDICTED: uncharacterized protein LOC100779674 [Glycine max];; (*TAIR) AT2G02960.3 (e_value=3e-65) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:862346-863980 REVERSE LENGTH=271;; (*ITAG) Solyc01g010880.2.1 (e_value=7e-113) genomic_reference:SL2.40ch01 gene_region:6317605-6322790 transcript_region:SL2.40ch01:6317605..6322790- go_terms:GO:0005515 functional_description:"E3 ubiquitin-protein ligase MARCH3 (AHRD V1 *--- B5X3M1_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00009634g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.33|1|0.5|0.66|3|0|216; (*GB) gi|297846616|ref|XP_002891189.1| (e_value=1e-42) hypothetical protein ARALYDRAFT_473682 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9UT23|MFH1_SCHPO (e_value=2e-22) ATP-dependent DNA helicase mfh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfh1 PE=2 SV=2;; (*TAIR) AT1G35530.2 (e_value=2e-40) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390;; (*ITAG) Solyc11g020750.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11957851-11964211 transcript_region:SL2.40ch11:11957851..11964211+ go_terms:GO:0008026 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00039494g0002.1 protein AED:0.12 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|679; (*GB) gi|225426858|ref|XP_002276880.1| (e_value=0.0) PREDICTED: scarecrow-like protein 28 [Vitis vinifera];; (*SWP) sp|Q9CAN3|SCL28_ARATH (e_value=0.0) Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1;; (*TAIR) AT1G63100.1 (e_value=0.0) | Symbols: | GRAS family transcription factor | chr1:23399391-23401367 REVERSE LENGTH=658;; (*ITAG) Solyc08g080400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60850338-60852377 transcript_region:SL2.40ch08:60850338..60852377- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 *--* B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00039494g0007.1 protein AED:0.25 eAED:0.25 QI:247|1|1|1|1|1|11|507|601; (*GB) gi|225426846|ref|XP_002276758.1| (e_value=5e-177) PREDICTED: uncharacterized protein LOC100251323 [Vitis vinifera];; (*TAIR) AT4G11740.1 (e_value=4e-125) | Symbols: SAY1 | Ubiquitin-like superfamily protein | chr4:7071955-7075256 FORWARD LENGTH=564;; (*ITAG) Solyc08g080410.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60862050-60868830 transcript_region:SL2.40ch08:60862050..60868830- functional_description:"UBX domain-containing protein (AHRD V1 ***- D7MDX6_ARALY); contains Interpro domain(s) IPR001012 UBX "; NbS00039494g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|1|1|2|0|496; (*GB) gi|225426856|ref|XP_002283461.1| (e_value=0.0) PREDICTED: probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2-like [Vitis vinifera];; (*SWP) sp|Q9FXW4|C80B2_COPJA (e_value=1e-142) Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Coptis japonica GN=CYP80B2 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=4e-130) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc08g080380.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60845204-60847167 transcript_region:SL2.40ch08:60845204..60847167+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00059622g0001.1 protein AED:0.15 eAED:0.15 QI:50|0.87|0.88|1|0.5|0.55|9|608|251; (*GB) gi|1841468|emb|CAA71881.1| (e_value=6e-128) Tyrosyl-tRNA synthetase [Nicotiana tabacum];; (*SWP) sp|Q5UPJ7|SYY_MIMIV (e_value=9e-39) Tyrosine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1;; (*TAIR) AT2G33840.1 (e_value=1e-92) | Symbols: | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr2:14315011-14317329 FORWARD LENGTH=385;; (*ITAG) Solyc01g109360.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:88097789-88103284 transcript_region:SL2.40ch01:88097789..88103284+ go_terms:GO:0004831,GO:0005153 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 **** P93363_TOBAC); contains Interpro domain(s) IPR016485 Tyrosine tRNA ligase, archaeal/eukaryotic "; GO:0004831,GO:0005153 NbS00000841g0015.1 protein AED:0.21 eAED:0.21 QI:229|1|1|1|0.77|0.7|10|595|310; (*GB) gi|297733732|emb|CBI14979.3| (e_value=4e-77) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G34140.3 (e_value=7e-63) | Symbols: | D111/G-patch domain-containing protein | chr4:16350942-16354022 FORWARD LENGTH=501;; (*ITAG) Solyc03g112510.1.1 (e_value=4e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56954505-56959343 transcript_region:SL2.40ch03:56954505..56959343+ go_terms:GO:0005622 functional_description:"RNA-binding protein 5-A (AHRD V1 *-*- RBM5A_XENLA); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00000841g0013.1 protein AED:0.02 eAED:0.02 QI:237|1|1|1|1|1|5|523|444; (*GB) gi|147862850|emb|CAN80923.1| (e_value=0.0) hypothetical protein VITISV_013176 [Vitis vinifera];; (*SWP) sp|Q94A02|TAR2_ARATH (e_value=9e-155) Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1;; (*TAIR) AT4G24670.2 (e_value=7e-156) | Symbols: TAR2 | tryptophan aminotransferase related 2 | chr4:12727940-12730694 REVERSE LENGTH=440;; (*ITAG) Solyc03g112460.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56913246-56918493 transcript_region:SL2.40ch03:56913246..56918493- go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- Q94EJ8_ALLFI); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00000841g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|478; (*GB) gi|359474405|ref|XP_003631455.1| (e_value=8e-151) PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera];; (*SWP) sp|Q9LVS3|PP422_ARATH (e_value=3e-106) Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1;; (*TAIR) AT5G47360.1 (e_value=3e-107) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19214445-19215878 REVERSE LENGTH=477;; (*ITAG) Solyc08g078280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59258619-59260049 transcript_region:SL2.40ch08:59258619..59260049- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MPU5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00001749g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|634; (*GB) gi|351727583|ref|NP_001235886.1| (e_value=0.0) circadian clock-associated FKF1 [Glycine max];; (*SWP) sp|Q9C9W9|ADO3_ARATH (e_value=0.0) Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1;; (*TAIR) AT1G68050.1 (e_value=0.0) | Symbols: ADO3, FKF1 | flavin-binding, kelch repeat, f box 1 | chr1:25508737-25510697 FORWARD LENGTH=619;; (*ITAG) Solyc01g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:216655-221730 transcript_region:SL2.40ch01:216655..221730+ go_terms:GO:0005515 functional_description:"Flavin-binding kelch domain F box protein (AHRD V1 **-* D7KVS5_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00001749g0001.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|3|0|209; (*GB) gi|356565457|ref|XP_003550956.1| (e_value=9e-58) PREDICTED: tubulin alpha chain-like [Glycine max];; (*SWP) sp|Q9SCC8|TBAN_GUITH (e_value=7e-54) Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1;; (*TAIR) AT5G19780.1 (e_value=3e-32) | Symbols: TUA5 | tubulin alpha-5 | chr5:6687212-6688926 FORWARD LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=1e-31) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00021840g0003.1 protein AED:0.25 eAED:0.25 QI:166|1|1|1|1|1|8|187|423; (*GB) gi|350534564|ref|NP_001234147.1| (e_value=0.0) 26S protease regulatory subunit 6A homolog [Solanum lycopersicum];; (*SWP) sp|P54776|PRS6A_SOLLC (e_value=0.0) 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1;; (*TAIR) AT3G05530.1 (e_value=0.0) | Symbols: RPT5A, ATS6A.2 | regulatory particle triple-A ATPase 5A | chr3:1603540-1605993 FORWARD LENGTH=424;; (*ITAG) Solyc01g099760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81668247-81673265 transcript_region:SL2.40ch01:81668247..81673265+ go_terms:GO:0004175 functional_description:"26S protease regulatory subunit 6A homolog (AHRD V1 ***- PRS6A_SOLLC); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0004175 NbS00008382g0001.1 protein AED:0.29 eAED:0.29 QI:295|0.66|1|1|1|1|4|196|154; (*GB) gi|311907|emb|CAA51011.1| (e_value=1e-86) ras-related GTP-binding protein [Nicotiana tabacum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=3e-76) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=3e-77) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc05g053940.2.1 (e_value=3e-88) genomic_reference:SL2.40ch05 gene_region:63104823-63109660 transcript_region:SL2.40ch05:63104823..63109660- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B6RB23_HALDI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00012346g0001.1 protein AED:0.16 eAED:0.17 QI:238|0.96|0.96|1|0.84|0.84|26|390|1175; (*GB) gi|359474026|ref|XP_002276624.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259829 [Vitis vinifera];; (*TAIR) AT4G11670.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr4:7044401-7052971 REVERSE LENGTH=1117;; (*ITAG) Solyc08g080520.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60956901-60977239 transcript_region:SL2.40ch08:60956901..60977239+ functional_description:"AT5g06970/MOJ9_14 (AHRD V1 **-- Q8RX56_ARATH); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00020978g0004.1 protein AED:0.29 eAED:0.43 QI:691|0.75|0.8|1|0|0.2|5|0|102 NbS00020978g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.90|0.83|1|0.72|0.83|12|145|482; (*GB) gi|302143051|emb|CBI20346.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7XSK0|BGL18_ORYSJ (e_value=6e-165) Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=2 SV=2;; (*TAIR) AT1G61810.1 (e_value=2e-144) | Symbols: BGLU45 | beta-glucosidase 45 | chr1:22830035-22832813 FORWARD LENGTH=520;; (*ITAG) Solyc07g063390.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63085890-63089422 transcript_region:SL2.40ch07:63085890..63089422- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00039035g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|228; (*GB) gi|321158525|dbj|BAJ72665.1| (e_value=5e-109) ethylene response factor 6a [Nicotiana tabacum];; (*SWP) sp|O80340|ERF78_ARATH (e_value=4e-29) Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1;; (*TAIR) AT3G15210.1 (e_value=3e-30) | Symbols: ATERF-4, ERF4, RAP2.5, ATERF4 | ethylene responsive element binding factor 4 | chr3:5121472-5122140 FORWARD LENGTH=222;; (*ITAG) Solyc10g009110.1.1 (e_value=8e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:3130028-3130696 transcript_region:SL2.40ch10:3130028..3130696+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 ***- B6SIZ8_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00054107g0003.1 protein AED:0.06 eAED:0.06 QI:271|1|1|1|0.75|0.6|5|153|468; (*GB) gi|224118286|ref|XP_002317781.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SF32|IQD1_ARATH (e_value=8e-18) Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1;; (*TAIR) AT3G49260.3 (e_value=2e-36) | Symbols: iqd21 | IQ-domain 21 | chr3:18262755-18265859 FORWARD LENGTH=472;; (*ITAG) Solyc03g083100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46466257-46469172 transcript_region:SL2.40ch03:46466257..46469172- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein family-like (AHRD V1 **-* Q6YXT2_ORYSJ); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00052028g0004.1 protein AED:0.14 eAED:0.14 QI:308|0.8|1|1|0.8|0.83|6|192|248; (*GB) gi|76573305|gb|ABA46757.1| (e_value=8e-121) syntaxin-like protein [Solanum tuberosum];; (*SWP) sp|P93654|SYP22_ARATH (e_value=8e-102) Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1;; (*TAIR) AT5G46860.1 (e_value=6e-103) | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Syntaxin/t-SNARE family protein | chr5:19012342-19013795 REVERSE LENGTH=268;; (*ITAG) Solyc08g005200.2.1 (e_value=1e-130) genomic_reference:SL2.40ch08 gene_region:130883-136111 transcript_region:SL2.40ch08:130883..136111- go_terms:GO:0005484 functional_description:"Syntaxin-like protein (AHRD V1 ***- Q3HRZ4_SOLTU); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00052028g0005.1 protein AED:0.16 eAED:0.59 QI:95|0|0.5|1|1|1|2|0|249; (*GB) gi|225454072|ref|XP_002265479.1| (e_value=1e-114) PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Vitis vinifera];; (*SWP) sp|Q5ZKA3|CWC22_CHICK (e_value=3e-66) Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2;; (*TAIR) AT1G80930.1 (e_value=3e-113) | Symbols: | MIF4G domain-containing protein / MA3 domain-containing protein | chr1:30405774-30409499 REVERSE LENGTH=900;; (*ITAG) Solyc08g005190.2.1 (e_value=1e-116) genomic_reference:SL2.40ch08 gene_region:124884-130281 transcript_region:SL2.40ch08:124884..130281+ go_terms:GO:0003723 functional_description:"Pre-mRNA-splicing factor cwc22 (AHRD V1 *-*- B0W4Z5_CULQU); contains Interpro domain(s) IPR003890 MIF4G-like, type 3 "; GO:0003723 NbS00028488g0005.1 protein AED:0.39 eAED:0.39 QI:13|0.6|0.66|1|0.4|0.33|6|25|206; (*GB) gi|296086724|emb|CBI32359.3| (e_value=2e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03250.1 (e_value=7e-29) | Symbols: | unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:793576-795159 REVERSE LENGTH=245;; (*ITAG) Solyc09g064930.2.1 (e_value=3e-47) genomic_reference:SL2.40ch09 gene_region:58080451-58086393 transcript_region:SL2.40ch09:58080451..58086393+ go_terms:GO:0003676 functional_description:"R3H domain-containing protein C19orf22 homolog (AHRD V1 ***- CS022_BOVIN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00028488g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0|2|0|534; (*GB) gi|359491363|ref|XP_002265397.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g60960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FME4|PP438_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1;; (*TAIR) AT5G60960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24528423-24529988 REVERSE LENGTH=521;; (*ITAG) Solyc03g114920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58835298-58836866 transcript_region:SL2.40ch03:58835298..58836866- go_terms:GO:0016020 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016020 NbS00032029g0004.1 protein AED:0.23 eAED:0.23 QI:485|0.92|0.92|1|0.76|0.71|14|234|461; (*GB) gi|255559122|ref|XP_002520583.1| (e_value=0.0) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|O48921|C97B2_SOYBN (e_value=0.0) Cytochrome P450 97B2, chloroplastic OS=Glycine max GN=CYP97B2 PE=2 SV=1;; (*TAIR) AT4G15110.1 (e_value=0.0) | Symbols: CYP97B3 | cytochrome P450, family 97, subfamily B, polypeptide 3 | chr4:8629922-8632993 REVERSE LENGTH=580;; (*ITAG) Solyc05g016330.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:15575138-15583910 transcript_region:SL2.40ch05:15575138..15583910+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00032029g0007.1 protein AED:0.25 eAED:0.26 QI:241|0.62|0.33|0.88|0.87|0.88|9|0|700; (*GB) gi|225464805|ref|XP_002268635.1| (e_value=0.0) PREDICTED: probable S-acyltransferase At4g15080-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8L5Y5|ZDH17_ARATH (e_value=0.0) Probable S-acyltransferase At4g15080 OS=Arabidopsis thaliana GN=At4g15080 PE=1 SV=1;; (*TAIR) AT4G15080.1 (e_value=0.0) | Symbols: | DHHC-type zinc finger family protein | chr4:8609085-8612229 REVERSE LENGTH=718;; (*ITAG) Solyc05g016030.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:13610807-13620126 transcript_region:SL2.40ch05:13610807..13620126+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C1GFP3_PARBD); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00052636g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|795; (*GB) gi|147797454|emb|CAN69165.1| (e_value=4e-11) hypothetical protein VITISV_015325 [Vitis vinifera];; (*ITAG) Solyc08g081650.1.1 (e_value=2e-128) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:61803221-61805947 transcript_region:SL2.40ch08:61803221..61805947- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00011311g0115.1 protein AED:0.12 eAED:0.12 QI:523|1|0.85|1|0.66|0.71|7|0|392 NbS00011311g0116.1 protein AED:0.20 eAED:0.20 QI:0|0.92|0.85|0.92|1|1|14|461|486 NbS00011311g0111.1 protein AED:0.65 eAED:0.65 QI:0|0|0.5|0.5|0|0|2|73|160 NbS00053584g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|461; (*GB) gi|224106708|ref|XP_002314255.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0V865|FAFL_ARATH (e_value=3e-42) Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1;; (*TAIR) AT5G22090.2 (e_value=2e-43) | Symbols: | Protein of unknown function (DUF3049) | chr5:7315003-7316394 REVERSE LENGTH=463;; (*ITAG) Solyc01g009270.1.1 (e_value=3e-97) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3291820-3293241 transcript_region:SL2.40ch01:3291820..3293241- functional_description:"Unknown Protein (AHRD V1)"; NbS00054612g0006.1 protein AED:0.34 eAED:0.37 QI:62|0|0.2|1|0|0|5|0|290; (*GB) gi|22128591|gb|AAM52341.1| (e_value=6e-64) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=4e-31) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=3e-32) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=6e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00046196g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|151 NbS00021505g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.33|1|1|3|0|130; (*GB) gi|224100657|ref|XP_002311964.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=7e-18) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*ITAG) Solyc11g007350.1.1 (e_value=5e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1721009-1722400 transcript_region:SL2.40ch11:1721009..1722400- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00021505g0007.1 protein AED:0.18 eAED:0.18 QI:3|1|0|1|0.5|0.66|3|0|461; (*GB) gi|225430206|ref|XP_002282448.1| (e_value=3e-96) PREDICTED: uncharacterized protein LOC100264564 [Vitis vinifera];; (*TAIR) AT4G32440.1 (e_value=4e-61) | Symbols: | Plant Tudor-like RNA-binding protein | chr4:15657295-15658692 FORWARD LENGTH=377;; (*ITAG) Solyc11g007340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1716337-1718630 transcript_region:SL2.40ch11:1716337..1718630+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; GO:0003723 NbS00058552g0001.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.5|1|1|2|0|564; (*GB) gi|224053993|ref|XP_002298075.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5X8|MOCOS_ARATH (e_value=2e-14) Molybdenum cofactor sulfurase OS=Arabidopsis thaliana GN=ABA3 PE=1 SV=1;; (*TAIR) AT5G51920.1 (e_value=2e-150) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:21097202-21098914 REVERSE LENGTH=570;; (*ITAG) Solyc08g080180.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60672326-60674167 transcript_region:SL2.40ch08:60672326..60674167- go_terms:GO:0030170 functional_description:"Molybdenum cofactor sulfurase (AHRD V1 ***- C9SRE5_VERA1); contains Interpro domain(s) IPR015424 Pyridoxal phosphate-dependent transferase, major region "; GO:0030170 NbS00028274g0006.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|0.5|0.66|3|109|869; (*GB) gi|255586113|ref|XP_002533720.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G51640.1 (e_value=5e-180) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51650.1); Has 26208 Blast hits to 14155 proteins in 1229 species: Archae - 43; Bacteria - 3230; Metazoa - 9456; Fungi - 2551; Plants - 1160; Viruses - 177; Other Eukaryotes - 9591 (source: NCBI BLink). | chr3:19154294-19157134 FORWARD LENGTH=842;; (*ITAG) Solyc09g018310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14422207-14431899 transcript_region:SL2.40ch09:14422207..14431899+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028274g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|512; (*GB) gi|224139330|ref|XP_002323059.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7X996|CIPK2_ORYSJ (e_value=0.0) CBL-interacting protein kinase 2 OS=Oryza sativa subsp. japonica GN=CIPK2 PE=2 SV=1;; (*TAIR) AT5G58380.1 (e_value=4e-180) | Symbols: CIPK10, PKS2, SIP1, SNRK3.8 | SOS3-interacting protein 1 | chr5:23597092-23598531 REVERSE LENGTH=479;; (*ITAG) Solyc09g042660.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:29278782-29280336 transcript_region:SL2.40ch09:29278782..29280336- go_terms:GO:0004683 functional_description:"CBL-interacting protein kinase 22 (AHRD V1 **** A0MNK8_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00001532g0008.1 protein AED:0.46 eAED:0.53 QI:0|0.25|0.2|0.8|1|1|5|212|82 NbS00040936g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.6|1|1|1|5|0|464; (*GB) gi|350538583|ref|NP_001234606.1| (e_value=0.0) amino acid transporter [Solanum lycopersicum];; (*SWP) sp|Q39134|AAP3_ARATH (e_value=0.0) Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2;; (*TAIR) AT1G77380.1 (e_value=0.0) | Symbols: AAP3, ATAAP3 | amino acid permease 3 | chr1:29075201-29077252 REVERSE LENGTH=476;; (*ITAG) Solyc06g060110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34421106-34423721 transcript_region:SL2.40ch06:34421106..34423721- go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease (AHRD V1 **** B9GU10_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00038706g0002.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|519; (*GB) gi|225447562|ref|XP_002269867.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SZ10|PP338_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1;; (*TAIR) AT4G26680.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13454853-13456418 FORWARD LENGTH=521;; (*ITAG) Solyc07g047620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56184122-56185714 transcript_region:SL2.40ch07:56184122..56185714- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00038706g0006.1 protein AED:0.06 eAED:0.26 QI:0|0|0|1|1|1|2|0|177; (*GB) gi|357495297|ref|XP_003617937.1| (e_value=8e-53) F-box protein SNE [Medicago truncatula];; (*SWP) sp|Q9LUB6|SNE_ARATH (e_value=4e-38) F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1;; (*TAIR) AT5G48170.1 (e_value=3e-39) | Symbols: SLY2 | F-box family protein | chr5:19532729-19533202 REVERSE LENGTH=157;; (*ITAG) Solyc07g047680.1.1 (e_value=4e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56237088-56237591 transcript_region:SL2.40ch07:56237088..56237591+ functional_description:"F-box protein GID2 (AHRD V1 *-*- B6SU06_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00004928g0007.1 protein AED:0.04 eAED:0.04 QI:0|0.85|0.62|1|1|0.87|8|625|412; (*GB) gi|224144682|ref|XP_002325374.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5U2W5|TBL3_RAT (e_value=3e-90) Transducin beta-like protein 3 OS=Rattus norvegicus GN=Tbl3 PE=2 SV=1;; (*TAIR) AT5G16750.1 (e_value=0.0) | Symbols: TOZ | Transducin family protein / WD-40 repeat family protein | chr5:5504541-5509266 REVERSE LENGTH=876;; (*ITAG) Solyc03g097160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52927685-52937165 transcript_region:SL2.40ch03:52927685..52937165+ go_terms:GO:0030515 functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AUL0_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00004928g0008.1 protein AED:0.10 eAED:0.10 QI:207|0.83|0.85|1|0.66|0.85|7|94|423; (*GB) gi|225454728|ref|XP_002272675.1| (e_value=0.0) PREDICTED: transducin beta-like protein 3-like [Vitis vinifera];; (*SWP) sp|Q8C4J7|TBL3_MOUSE (e_value=2e-65) Transducin beta-like protein 3 OS=Mus musculus GN=Tbl3 PE=2 SV=1;; (*TAIR) AT5G16750.1 (e_value=0.0) | Symbols: TOZ | Transducin family protein / WD-40 repeat family protein | chr5:5504541-5509266 REVERSE LENGTH=876;; (*ITAG) Solyc03g097160.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52927685-52937165 transcript_region:SL2.40ch03:52927685..52937165+ go_terms:GO:0030515 functional_description:"WD-40 repeat protein (AHRD V1 **-- B4AUL0_9CHRO); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00004928g0003.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|62; (*GB) gi|57014022|ref|YP_173493.1| (e_value=1e-17) hypothetical protein NitaMp156 [Nicotiana tabacum]; NbS00031496g0008.1 protein AED:0.17 eAED:0.17 QI:234|1|0.88|1|1|1|9|0|694; (*GB) gi|359487356|ref|XP_003633575.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100855398 [Vitis vinifera];; (*SWP) sp|Q9DDY9|PAB2A_XENLA (e_value=3e-16) Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1;; (*TAIR) AT3G12640.1 (e_value=6e-119) | Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr3:4014455-4017675 FORWARD LENGTH=638;; (*ITAG) Solyc01g086980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73656971-73667868 transcript_region:SL2.40ch01:73656971..73667868+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *-*- C9S619_VERA1); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00031496g0009.1 protein AED:0.13 eAED:0.13 QI:461|0.75|0.77|1|0.5|0.55|9|180|501; (*GB) gi|255575782|ref|XP_002528790.1| (e_value=2e-107) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9FT92|Y5843_ARATH (e_value=1e-85) Uncharacterized protein At5g08430 OS=Arabidopsis thaliana GN=At5g08430 PE=1 SV=2;; (*TAIR) AT5G08430.1 (e_value=8e-87) | Symbols: | SWIB/MDM2 domain;Plus-3;GYF | chr5:2716974-2720095 FORWARD LENGTH=553;; (*ITAG) Solyc01g086940.2.1 (e_value=8e-141) genomic_reference:SL2.40ch01 gene_region:73610243-73625040 transcript_region:SL2.40ch01:73610243..73625040+ go_terms:GO:0005634 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 **-- C3H44_ARATH); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634 NbS00003033g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|112; (*GB) gi|255550060|ref|XP_002516081.1| (e_value=9e-27) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g120170.1.1 (e_value=6e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62690166-62690507 transcript_region:SL2.40ch03:62690166..62690507+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004075g0004.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|2|0|278; (*GB) gi|323149963|gb|ADX33331.1| (e_value=6e-119) R2R3-MYB transcription factor [Petunia x hybrida];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=2e-81) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=3e-75) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc01g111500.2.1 (e_value=1e-99) genomic_reference:SL2.40ch01 gene_region:89480965-89482050 transcript_region:SL2.40ch01:89480965..89482050- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** B9H191_POPTR); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00034660g0001.1 protein AED:0.01 eAED:0.01 QI:187|0.5|0.66|1|0|0.66|3|704|168; (*GB) gi|268638403|gb|ACZ17543.1| (e_value=1e-89) oxidoreductase [Capsicum annuum];; (*SWP) sp|P51091|LDOX_MALDO (e_value=5e-30) Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1;; (*TAIR) AT3G55970.1 (e_value=8e-67) | Symbols: ATJRG21, JRG21 | jasmonate-regulated gene 21 | chr3:20766970-20769264 REVERSE LENGTH=363;; (*ITAG) Solyc10g076660.1.1 (e_value=3e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58933875-58936555 transcript_region:SL2.40ch10:58933875..58936555+ go_terms:GO:0016491,GO:0055114 functional_description:"Anthocyanidin synthase (AHRD V1 **-- Q2QCX4_GOSHI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00034660g0002.1 protein AED:0.04 eAED:0.04 QI:690|1|1|1|0.5|0.4|5|764|163; (*GB) gi|359431023|gb|AEV46322.1| (e_value=5e-86) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=2e-74) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.2 (e_value=4e-63) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19508833 REVERSE LENGTH=524;; (*ITAG) Solyc10g083300.1.1 (e_value=3e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62447632-62451825 transcript_region:SL2.40ch10:62447632..62451825- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00007648g0006.1 protein AED:0.51 eAED:0.83 QI:0|0|0|0.5|0.33|0.75|4|0|153; (*GB) gi|224127272|ref|XP_002320031.1| (e_value=6e-16) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9FHS6|FK119_ARATH (e_value=1e-12) F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1;; (*TAIR) AT5G43190.1 (e_value=1e-13) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:17340300-17341511 REVERSE LENGTH=403;; (*ITAG) Solyc04g077840.2.1 (e_value=7e-17) genomic_reference:SL2.40ch04 gene_region:60314701-60316185 transcript_region:SL2.40ch04:60314701..60316185+ functional_description:"F-box/kelch-repeat protein At5g43190 (AHRD V1 *-*- FK119_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00007648g0005.1 protein AED:0.47 eAED:0.69 QI:0|0|0|1|0|0|2|0|69; (*ITAG) Solyc04g077840.2.1 (e_value=7e-17) genomic_reference:SL2.40ch04 gene_region:60314701-60316185 transcript_region:SL2.40ch04:60314701..60316185+ functional_description:"F-box/kelch-repeat protein At5g43190 (AHRD V1 *-*- FK119_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027901g0007.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.71|1|1|1|7|0|491; (*GB) gi|224053695|ref|XP_002297933.1| (e_value=0.0) aminophospholipid ATPase [Populus trichocarpa];; (*SWP) sp|Q9LVK9|ALA7_ARATH (e_value=0.0) Putative phospholipid-transporting ATPase 7 OS=Arabidopsis thaliana GN=ALA7 PE=2 SV=3;; (*TAIR) AT3G13900.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:4586151-4590681 FORWARD LENGTH=1243;; (*ITAG) Solyc02g069430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33901124-33903618 transcript_region:SL2.40ch02:33901124..33903618+ go_terms:GO:0005516,GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1HB29_PARBA); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0005516,GO:0004012 NbS00003158g0001.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|305; (*GB) gi|359478183|ref|XP_002268187.2| (e_value=6e-99) PREDICTED: UDP-glycosyltransferase 85A1 [Vitis vinifera];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=4e-50) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=3e-51) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc03g083650.2.1 (e_value=7e-145) genomic_reference:SL2.40ch03 gene_region:47146484-47149965 transcript_region:SL2.40ch03:47146484..47149965- go_terms:GO:0015020 functional_description:"Glucosyltransferase-12 (AHRD V1 ***- Q8S997_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00003158g0002.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|342306008|dbj|BAK55740.1| (e_value=2e-21) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*ITAG) Solyc02g091350.2.1 (e_value=8e-31) genomic_reference:SL2.40ch02 gene_region:47253988-47256173 transcript_region:SL2.40ch02:47253988..47256173+ go_terms:GO:0015020 functional_description:"Glucosyltransferase-2 (AHRD V1 ***- Q8S9A7_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00003158g0008.1 protein AED:0.46 eAED:0.72 QI:0|0|0|1|0|0|3|0|97 NbS00055408g0003.1 protein AED:0.05 eAED:0.05 QI:98|1|1|1|1|1|4|181|210; (*GB) gi|365818563|gb|AEX00370.1| (e_value=4e-78) IAA35 [Solanum lycopersicum];; (*SWP) sp|Q93WC4|IAA29_ARATH (e_value=8e-25) Auxin-responsive protein IAA29 OS=Arabidopsis thaliana GN=IAA29 PE=2 SV=2;; (*TAIR) AT4G32280.1 (e_value=6e-26) | Symbols: IAA29 | indole-3-acetic acid inducible 29 | chr4:15583479-15584628 FORWARD LENGTH=251;; (*ITAG) Solyc07g008020.2.1 (e_value=7e-81) genomic_reference:SL2.40ch07 gene_region:2730891-2732677 transcript_region:SL2.40ch07:2730891..2732677+ go_terms:GO:0003700 functional_description:"Auxin response factor 16 (AHRD V1 *-** ARFP_ORYSJ); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00015718g0029.1 protein AED:0.13 eAED:0.13 QI:0|0.71|1|1|1|1|8|492|515; (*GB) gi|225448041|ref|XP_002273537.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246257 [Vitis vinifera];; (*TAIR) AT5G24690.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF3411) | chr5:8455783-8458513 REVERSE LENGTH=521;; (*ITAG) Solyc01g104270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84460019-84465624 transcript_region:SL2.40ch01:84460019..84465624+ go_terms:GO:0005524 functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; GO:0005524 NbS00015718g0005.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.5|1|1|2|0|241; (*GB) gi|15217445|ref|NP_177893.1| (e_value=5e-111) pathogenesis-related thaumatin-like protein [Arabidopsis thaliana];; (*SWP) sp|P50699|TLPH_ARATH (e_value=2e-76) Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2;; (*TAIR) AT1G77700.1 (e_value=1e-113) | Symbols: | Pathogenesis-related thaumatin superfamily protein | chr1:29204747-29206217 FORWARD LENGTH=356;; (*ITAG) Solyc01g104290.1.1 (e_value=8e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84467760-84469115 transcript_region:SL2.40ch01:84467760..84469115+ go_terms:GO:0005515 functional_description:"Thaumatin-like protein 12104-13574 (AHRD V1 ***- Q9CA24_ARATH); contains Interpro domain(s) IPR001938 Thaumatin, pathogenesis-related "; GO:0005515 NbS00015718g0004.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|276; (*GB) gi|225448055|ref|XP_002275577.1| (e_value=1e-102) PREDICTED: putative elongation of fatty acids protein DDB_G0272012-like [Vitis vinifera];; (*SWP) sp|Q86JM5|Y2012_DICDI (e_value=2e-26) Putative elongation of fatty acids protein DDB_G0272012 OS=Dictyostelium discoideum GN=DDB_G0272012 PE=3 SV=1;; (*TAIR) AT3G06470.1 (e_value=5e-100) | Symbols: | GNS1/SUR4 membrane protein family | chr3:1984206-1985042 FORWARD LENGTH=278;; (*ITAG) Solyc01g104280.2.1 (e_value=1e-136) genomic_reference:SL2.40ch01 gene_region:84466405-84467574 transcript_region:SL2.40ch01:84466405..84467574+ go_terms:GO:0009922 functional_description:"Elongation of very long chain fatty acids-like 2 protein (AHRD V1 **** D4N2R0_MELGA); contains Interpro domain(s) IPR002076 GNS1/SUR4 membrane protein "; GO:0009922 NbS00015718g0010.1 protein AED:0.22 eAED:0.25 QI:0|0|0.4|1|1|1|5|438|440; (*GB) gi|356525940|ref|XP_003531579.1| (e_value=3e-61) PREDICTED: uncharacterized protein LOC100804252 [Glycine max];; (*TAIR) AT1G10790.1 (e_value=1e-35) | Symbols: | BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G56590.2); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3596360-3597847 FORWARD LENGTH=336;; (*ITAG) Solyc01g104240.2.1 (e_value=7e-111) genomic_reference:SL2.40ch01 gene_region:84446877-84452363 transcript_region:SL2.40ch01:84446877..84452363+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *-*- Q5JLQ2_ORYSJ)"; NbS00015718g0022.1 protein AED:0.41 eAED:0.41 QI:278|0.75|0.6|1|0.25|0.2|5|210|243; (*GB) gi|118488325|gb|ABK95981.1| (e_value=2e-122) unknown [Populus trichocarpa];; (*SWP) sp|F4ITL6|RTE1_ARATH (e_value=7e-112) Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana GN=RTE1 PE=1 SV=1;; (*TAIR) AT2G26070.1 (e_value=5e-113) | Symbols: RTE1 | Protein of unknown function (DUF778) | chr2:11105741-11106607 REVERSE LENGTH=250;; (*ITAG) Solyc01g104340.1.1 (e_value=3e-115) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84508287-84509191 transcript_region:SL2.40ch01:84508287..84509191+ go_terms:GO:0005515 functional_description:"Transmembrane protein 222 (Fragment) (AHRD V1 **-- Q5SSC2_HUMAN); contains Interpro domain(s) IPR008496 Protein of unknown function DUF778 "; GO:0005515 NbS00015718g0006.1 protein AED:0.15 eAED:0.15 QI:677|1|1|1|0.75|0.84|13|329|721; (*GB) gi|359486082|ref|XP_002273298.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248070 [Vitis vinifera];; (*TAIR) AT1G71240.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr1:26855489-26859599 FORWARD LENGTH=823;; (*ITAG) Solyc01g104300.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84469599-84483989 transcript_region:SL2.40ch01:84469599..84483989- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00015718g0033.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.33|1|0|0.33|3|364|291; (*GB) gi|356557503|ref|XP_003547055.1| (e_value=1e-62) PREDICTED: uncharacterized protein LOC100803179 [Glycine max];; (*SWP) sp|P0CH30|RING1_GOSHI (e_value=4e-24) E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1;; (*TAIR) AT1G68180.1 (e_value=1e-39) | Symbols: | RING/U-box superfamily protein | chr1:25554816-25555562 FORWARD LENGTH=248;; (*ITAG) Solyc01g104260.2.1 (e_value=2e-126) genomic_reference:SL2.40ch01 gene_region:84457894-84459005 transcript_region:SL2.40ch01:84457894..84459005- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- RNF13_CHICK); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00015718g0026.1 protein AED:0.20 eAED:0.21 QI:0|0.57|0.62|1|0.85|0.75|8|541|472; (*GB) gi|255575412|ref|XP_002528608.1| (e_value=1e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G33270.1 (e_value=1e-118) | Symbols: | Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein | chr1:12068324-12070157 REVERSE LENGTH=369;; (*ITAG) Solyc01g104310.2.1 (e_value=5e-161) genomic_reference:SL2.40ch01 gene_region:84486526-84490501 transcript_region:SL2.40ch01:84486526..84490501- go_terms:GO:0006629,GO:0008152 functional_description:"Patatin-like phospholipase domain-containing protein (AHRD V1 *-*- B6KR35_TOXGO); contains Interpro domain(s) IPR002641 Patatin "; GO:0006629,GO:0008152 NbS00015718g0027.1 protein AED:0.29 eAED:0.29 QI:171|1|1|1|0.8|0.83|6|382|247; (*GB) gi|89355891|gb|ABD72269.1| (e_value=4e-108) plastid fibrillin 3 [Coffea canephora];; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=1e-72) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1;; (*TAIR) AT3G26070.1 (e_value=8e-74) | Symbols: | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:9526904-9528199 FORWARD LENGTH=242;; (*ITAG) Solyc01g104320.2.1 (e_value=1e-114) genomic_reference:SL2.40ch01 gene_region:84492007-84495850 transcript_region:SL2.40ch01:84492007..84495850- go_terms:GO:0009507 functional_description:"PAP fibrillin (AHRD V1 ***- A2Q498_MEDTR); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00015718g0023.1 protein AED:0.41 eAED:0.41 QI:0|0.7|0.45|0.81|0.2|0.18|11|0|435; (*GB) gi|225448034|ref|XP_002273377.1| (e_value=5e-78) PREDICTED: rhomboid protease gluP [Vitis vinifera];; (*TAIR) AT1G25290.2 (e_value=8e-59) | Symbols: RBL10 | RHOMBOID-like protein 10 | chr1:8867157-8868945 FORWARD LENGTH=336;; (*ITAG) Solyc01g104250.2.1 (e_value=7e-138) genomic_reference:SL2.40ch01 gene_region:84452881-84457034 transcript_region:SL2.40ch01:84452881..84457034- go_terms:GO:0016021 functional_description:"Rhomboid-like protein (AHRD V1 ***- B6T5H4_MAIZE); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00016499g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|243; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=8e-131) putative MATE family transporter [Capsicum chinense];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=1e-37) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G03620.1 (e_value=2e-73) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=1e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00016499g0015.1 protein AED:0.20 eAED:0.20 QI:175|0.84|0.78|1|0.76|0.85|14|715|540; (*GB) gi|225425850|ref|XP_002265789.1| (e_value=0.0) PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera];; (*SWP) sp|Q14181|DPOA2_HUMAN (e_value=2e-30) DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2;; (*TAIR) AT1G67630.1 (e_value=0.0) | Symbols: POLA2 | DNA polymerase alpha 2 | chr1:25344573-25348287 REVERSE LENGTH=620;; (*ITAG) Solyc05g014540.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8393207-8399132 transcript_region:SL2.40ch05:8393207..8399132+ go_terms:GO:0046982 functional_description:"DNA polymerase alpha subunit B family (AHRD V1 ***- D7KVM0_ARALY); contains Interpro domain(s) IPR016722 DNA polymerase alpha, subunit B "; GO:0046982 NbS00016499g0017.1 protein AED:0.32 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|558; (*GB) gi|225425882|ref|XP_002266563.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9M8W9|PP211_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2;; (*TAIR) AT3G04130.2 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1084136-1085662 FORWARD LENGTH=508;; (*ITAG) Solyc05g014490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:8353096-8354652 transcript_region:SL2.40ch05:8353096..8354652+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L220_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016499g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.83|0.85|1|1|1|7|174|202; (*GB) gi|224107655|ref|XP_002314551.1| (e_value=1e-115) predicted protein [Populus trichocarpa];; (*SWP) sp|P28643|FABG_CUPLA (e_value=3e-114) 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Cuphea lanceolata GN=CLKR27 PE=2 SV=1;; (*TAIR) AT1G24360.1 (e_value=5e-97) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc05g014560.2.1 (e_value=1e-122) genomic_reference:SL2.40ch05 gene_region:8402493-8406263 transcript_region:SL2.40ch05:8402493..8406263- go_terms:GO:0004303 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0004303 NbS00016499g0001.1 protein AED:0.26 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|209954721|dbj|BAG80551.1| (e_value=1e-76) UDP-glucose:glucosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SJL0|U86A1_ARATH (e_value=5e-47) UDP-glycosyltransferase 86A1 OS=Arabidopsis thaliana GN=UGT86A1 PE=2 SV=1;; (*TAIR) AT2G36970.1 (e_value=4e-48) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15529050-15530712 FORWARD LENGTH=490;; (*ITAG) Solyc05g055840.2.1 (e_value=7e-63) genomic_reference:SL2.40ch05 gene_region:64469515-64471198 transcript_region:SL2.40ch05:64469515..64471198- go_terms:GO:0015020 functional_description:"Glucosyltransferase (AHRD V1 ***- A7M6J0_DIACA); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0015020 NbS00016499g0008.1 protein AED:0.77 eAED:0.84 QI:0|0|0|0.5|1|1|4|0|93 NbS00000888g0104.1 protein AED:0.45 eAED:0.55 QI:0|0|0|1|1|1|4|0|140 NbS00000888g0201.1 protein AED:0.10 eAED:0.10 QI:295|1|0.5|1|1|1|2|0|332 NbS00000888g0210.1 protein AED:0.36 eAED:0.36 QI:0|1|0|1|1|1|2|0|181 NbS00000888g0213.1 protein AED:0.35 eAED:0.44 QI:0|0|0|1|0|0|2|0|192 NbS00026248g0011.1 protein AED:0.29 eAED:0.29 QI:218|0.75|1|1|0.5|0.6|5|360|209; (*GB) gi|224055123|ref|XP_002298420.1| (e_value=2e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7L1T6|NB5R4_HUMAN (e_value=3e-22) Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1;; (*TAIR) AT5G09680.2 (e_value=4e-67) | Symbols: RLF | reduced lateral root formation | chr5:2999362-3000185 REVERSE LENGTH=211;; (*ITAG) Solyc01g087550.2.1 (e_value=4e-118) genomic_reference:SL2.40ch01 gene_region:74245157-74252090 transcript_region:SL2.40ch01:74245157..74252090- go_terms:GO:0020037 functional_description:"Nitrate reductase (AHRD V1 *--- Q7ZA50_9HYPO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0020037 NbS00026248g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0|1|1|1|3|0|363; (*GB) gi|255553512|ref|XP_002517797.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G08030.1 (e_value=0.0) | Symbols: | Protein of unknown function, DUF642 | chr3:2564191-2565819 FORWARD LENGTH=365;; (*ITAG) Solyc01g087540.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74242394-74244767 transcript_region:SL2.40ch01:74242394..74244767+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00026248g0013.1 protein AED:0.20 eAED:0.22 QI:0|0.66|0.42|1|0.83|0.57|7|0|594; (*GB) gi|147805442|emb|CAN69618.1| (e_value=0.0) hypothetical protein VITISV_036615 [Vitis vinifera];; (*SWP) sp|Q9C9Z1|ZTP50_ARATH (e_value=0.0) Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650 PE=2 SV=2;; (*TAIR) AT3G08650.2 (e_value=0.0) | Symbols: | ZIP metal ion transporter family | chr3:2624694-2627308 REVERSE LENGTH=619;; (*ITAG) Solyc01g087530.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74229849-74238478 transcript_region:SL2.40ch01:74229849..74238478+ go_terms:GO:0016020 functional_description:"Zinc transporter (AHRD V1 *-*- D5H5M3_SALRM); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00008009g0002.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|224109182|ref|XP_002315113.1| (e_value=3e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT5G16250.1 (e_value=1e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5310264-5310815 REVERSE LENGTH=183;; (*ITAG) Solyc08g014350.1.1 (e_value=2e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4086041-4086586 transcript_region:SL2.40ch08:4086041..4086586- functional_description:"TO23-3 (Fragment) (AHRD V1 *-*- Q3LVQ6_TAROF)"; NbS00008009g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.25|0|1|0.75|0.6|5|0|379; (*GB) gi|147865453|emb|CAN79406.1| (e_value=3e-141) hypothetical protein VITISV_000710 [Vitis vinifera];; (*SWP) sp|Q9Y305|ACOT9_HUMAN (e_value=3e-26) Acyl-coenzyme A thioesterase 9, mitochondrial OS=Homo sapiens GN=ACOT9 PE=1 SV=2;; (*TAIR) AT2G30720.1 (e_value=4e-135) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr2:13089604-13091538 REVERSE LENGTH=455;; (*ITAG) Solyc12g019490.1.1 (e_value=7e-169) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10584321-10593011 transcript_region:SL2.40ch12:10584321..10593011- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00017084g0004.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.4|1|0.75|0.6|5|0|321; (*GB) gi|225427189|ref|XP_002277964.1| (e_value=1e-128) PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera];; (*TAIR) AT4G17900.1 (e_value=2e-114) | Symbols: | PLATZ transcription factor family protein | chr4:9946046-9947697 FORWARD LENGTH=227;; (*ITAG) Solyc08g076860.2.1 (e_value=3e-124) genomic_reference:SL2.40ch08 gene_region:57934691-57936808 transcript_region:SL2.40ch08:57934691..57936808- go_terms:GO:0005488 functional_description:"Zinc-binding family protein (AHRD V1 **** D7MDD4_ARALY); contains Interpro domain(s) IPR006734 Protein of unknown function DUF597 "; GO:0005488 NbS00023129g0014.1 protein AED:0.12 eAED:0.12 QI:26|1|0.8|1|0.75|0.6|5|241|305; (*GB) gi|363814276|ref|NP_001242778.1| (e_value=4e-124) uncharacterized protein LOC100800993 [Glycine max];; (*SWP) sp|Q80WC3|TNC18_MOUSE (e_value=3e-11) Trinucleotide repeat-containing gene 18 protein OS=Mus musculus GN=Tnrc18 PE=1 SV=2;; (*TAIR) AT4G22140.2 (e_value=3e-121) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728093-11730230 REVERSE LENGTH=224;; (*ITAG) Solyc07g049210.2.1 (e_value=8e-117) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00023129g0015.1 protein AED:0.17 eAED:0.18 QI:0|0.36|0.33|0.91|0.63|0.66|12|0|897; (*GB) gi|350539601|ref|NP_001234725.1| (e_value=3e-174) Lyk12 precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=5e-44) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=2e-108) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc02g081050.2.1 (e_value=1e-177) genomic_reference:SL2.40ch02 gene_region:39687095-39691287 transcript_region:SL2.40ch02:39687095..39691287- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like kinase (AHRD V1 *-** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00023129g0007.1 protein AED:0.22 eAED:0.22 QI:231|0.91|0.84|0.92|0.83|0.69|13|0|531; (*GB) gi|297741763|emb|CBI32992.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=1e-52) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G62330.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:23046965-23050053 FORWARD LENGTH=652;; (*ITAG) Solyc02g081080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39732298-39737392 transcript_region:SL2.40ch02:39732298..39737392+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 **-- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00023129g0125.1 protein AED:0.10 eAED:0.10 QI:231|1|1|1|1|1|2|319|266 NbS00023129g0101.1 protein AED:0.13 eAED:0.13 QI:154|1|1|1|1|1|4|245|320 NbS00023129g0109.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.33|1|1|3|0|135 NbS00023129g0127.1 protein AED:0.06 eAED:0.08 QI:743|0.2|0.5|0.83|0.6|0.5|6|1329|305 NbS00023129g0131.1 protein AED:0.12 eAED:0.12 QI:100|0.5|0.33|0.66|0|0.33|3|0|110 NbS00023129g0120.1 protein AED:0.10 eAED:0.13 QI:0|0|0|0.66|1|1|3|0|861 NbS00023129g0134.1 protein AED:0.27 eAED:0.34 QI:0|0|0.2|1|0.75|0.6|5|83|413 NbS00014567g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|220; (*GB) gi|224071611|ref|XP_002303540.1| (e_value=2e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7C9|ESCA_ARATH (e_value=4e-35) Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1;; (*TAIR) AT4G22810.1 (e_value=8e-62) | Symbols: | Predicted AT-hook DNA-binding family protein | chr4:11984432-11985406 FORWARD LENGTH=324;; (*ITAG) Solyc08g007560.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2106197-2107409 transcript_region:SL2.40ch08:2106197..2107409+ go_terms:GO:0003680 functional_description:"AT-hook DNA-binding protein (Fragment) (AHRD V1 *--* A1DR81_CATRO); contains Interpro domain(s) IPR014476 Predicted AT-hook DNA-binding "; GO:0003680 NbS00014567g0005.1 protein AED:0.21 eAED:0.38 QI:0|0|0|1|0.5|0.33|3|0|188; (*GB) gi|224124916|ref|XP_002329845.1| (e_value=4e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g060530.1.1 (e_value=6e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34940789-34942252 transcript_region:SL2.40ch06:34940789..34942252+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00014567g0004.1 protein AED:0.40 eAED:0.80 QI:0|0|0|1|0.33|0|4|0|65 NbS00000751g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|120; (*GB) gi|76161006|gb|ABA40466.1| (e_value=8e-34) unknown [Solanum tuberosum];; (*TAIR) AT1G05760.1 (e_value=1e-13) | Symbols: RTM1 | Mannose-binding lectin superfamily protein | chr1:1723797-1724440 REVERSE LENGTH=174;; (*ITAG) Solyc09g083030.1.1 (e_value=3e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:64105104-64105607 transcript_region:SL2.40ch09:64105104..64105607- go_terms:GO:0005529 functional_description:"Myrosinase binding protein (AHRD V1 **-* P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; GO:0005529 NbS00005735g0003.1 protein AED:0.01 eAED:0.01 QI:171|1|1|1|1|1|2|181|114; (*GB) gi|328925268|dbj|BAK19151.1| (e_value=1e-55) lipid transfer protein [Nicotiana tabacum];; (*SWP) sp|Q03461|NLTP2_TOBAC (e_value=7e-56) Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=3e-22) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc10g075070.1.1 (e_value=4e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:58109657-58110129 transcript_region:SL2.40ch10:58109657..58110129- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A7UGG9_SOLTU); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00028474g0005.1 protein AED:0.16 eAED:0.16 QI:118|0.75|0.6|0.8|0.75|0.8|5|0|223; (*GB) gi|225439199|ref|XP_002275569.1| (e_value=9e-77) PREDICTED: membrin-11 [Vitis vinifera];; (*SWP) sp|Q9SJL6|MEM11_ARATH (e_value=5e-70) Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1;; (*TAIR) AT2G36900.1 (e_value=4e-71) | Symbols: MEMB11, ATMEMB11 | membrin 11 | chr2:15491615-15492587 REVERSE LENGTH=225;; (*ITAG) Solyc07g047720.2.1 (e_value=2e-98) genomic_reference:SL2.40ch07 gene_region:56257147-56260699 transcript_region:SL2.40ch07:56257147..56260699+ go_terms:GO:0005215,GO:0005484 functional_description:"Golgi SNAP receptor complex member bos1 (AHRD V1 **-* B0D8E0_LACBS); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0005215,GO:0005484 NbS00028474g0001.1 protein AED:0.48 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|75 NbS00028474g0007.1 protein AED:0.48 eAED:0.67 QI:0|0|0|1|0|0|2|0|105; (*GB) gi|224129122|ref|XP_002320506.1| (e_value=1e-14) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SFC7|FB135_ARATH (e_value=9e-15) F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1;; (*TAIR) AT3G07870.1 (e_value=7e-16) | Symbols: | F-box and associated interaction domains-containing protein | chr3:2510871-2512124 FORWARD LENGTH=417;; (*ITAG) Solyc12g006130.1.1 (e_value=1e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00050391g0001.1 protein AED:0.26 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|224111952|ref|XP_002316034.1| (e_value=1e-41) GRAS family transcription factor [Populus trichocarpa];; (*ITAG) Solyc01g059960.1.1 (e_value=7e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:62180467-62182194 transcript_region:SL2.40ch01:62180467..62182194+ go_terms:GO:0003700,GO:0042803 functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 **-- A1YWM9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700,GO:0042803 NbS00026480g0008.1 protein AED:0.57 eAED:0.60 QI:0|0|0|0.33|0.5|0.33|3|0|94 NbS00026480g0011.1 protein AED:0.26 eAED:0.63 QI:0|0|0|1|1|1|2|0|254; (*GB) gi|147776054|emb|CAN69909.1| (e_value=5e-14) hypothetical protein VITISV_027079 [Vitis vinifera];; (*ITAG) Solyc01g094420.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00026480g0009.1 protein AED:0.35 eAED:0.45 QI:0|0|0|0.75|0|0|4|0|115 NbS00026480g0010.1 protein AED:0.78 eAED:0.83 QI:0|0|0|0.33|0|0|3|0|104 NbS00026480g0013.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|2|0|64 NbS00018438g0012.1 protein AED:0.00 eAED:0.00 QI:281|1|1|1|1|1|3|177|259; (*GB) gi|388497846|gb|AFK36989.1| (e_value=4e-26) unknown [Medicago truncatula];; (*TAIR) AT4G16380.1 (e_value=1e-26) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr4:9254638-9255955 FORWARD LENGTH=254;; (*ITAG) Solyc04g015020.2.1 (e_value=3e-41) genomic_reference:SL2.40ch04 gene_region:5226676-5228677 transcript_region:SL2.40ch04:5226676..5228677- go_terms:GO:0030001 functional_description:"Proline-rich protein (AHRD V1 *-*- A1YL94_GOSHI); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00018438g0018.1 protein AED:0.14 eAED:0.14 QI:257|1|1|1|1|1|5|110|385; (*GB) gi|225467985|ref|XP_002269165.1| (e_value=3e-126) PREDICTED: uncharacterized protein LOC100256556 [Vitis vinifera];; (*TAIR) AT4G17240.1 (e_value=4e-71) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). | chr4:9666799-9668292 REVERSE LENGTH=343;; (*ITAG) Solyc04g014850.2.1 (e_value=3e-176) genomic_reference:SL2.40ch04 gene_region:5078602-5082852 transcript_region:SL2.40ch04:5078602..5082852- functional_description:"Unknown Protein (AHRD V1)"; NbS00018438g0020.1 protein AED:0.15 eAED:0.15 QI:0|0.77|0.7|0.9|1|1|10|33|508; (*GB) gi|225469059|ref|XP_002267938.1| (e_value=1e-169) PREDICTED: microtubule-associated protein 70-5-like [Vitis vinifera];; (*SWP) sp|Q8GYX3|MP705_ARATH (e_value=2e-135) Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1;; (*TAIR) AT4G17220.1 (e_value=2e-136) | Symbols: ATMAP70-5, MAP70-5 | microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513;; (*ITAG) Solyc04g015010.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5219478-5223595 transcript_region:SL2.40ch04:5219478..5223595+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 5 (AHRD V1 **-* Q8GYX3_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00018438g0015.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|1|1|2|0|246; (*GB) gi|356501636|ref|XP_003519630.1| (e_value=1e-96) PREDICTED: calcium-activated outward-rectifying potassium channel 1-like [Glycine max];; (*SWP) sp|Q8LBL1|TPK1_ARATH (e_value=2e-90) Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2;; (*TAIR) AT5G55630.2 (e_value=1e-91) | Symbols: KCO1, TPK1 | Outward rectifying potassium channel protein | chr5:22531718-22532893 FORWARD LENGTH=363;; (*ITAG) Solyc04g014880.2.1 (e_value=9e-147) genomic_reference:SL2.40ch04 gene_region:5133669-5135324 transcript_region:SL2.40ch04:5133669..5135324+ go_terms:GO:0015271,GO:0015269 functional_description:"Outward rectifying potassium channel (AHRD V1 **** B9IH25_POPTR); contains Interpro domain(s) IPR013099 Ion transport 2 "; GO:0015271,GO:0015269 NbS00018438g0008.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.33|1|1|3|0|62 NbS00018438g0017.1 protein AED:0.24 eAED:0.38 QI:0|0|0|1|0|0|4|0|336; (*GB) gi|359491185|ref|XP_002276558.2| (e_value=1e-77) PREDICTED: cytochrome P450 71A1-like [Vitis vinifera];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=8e-78) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G48310.1 (e_value=2e-56) | Symbols: CYP71A22 | cytochrome P450, family 71, subfamily A, polypeptide 22 | chr3:17888192-17889749 FORWARD LENGTH=490;; (*ITAG) Solyc06g060190.2.1 (e_value=2e-76) genomic_reference:SL2.40ch06 gene_region:34539342-34541210 transcript_region:SL2.40ch06:34539342..34541210- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00045926g0004.1 protein AED:0.30 eAED:0.35 QI:0|0|0.33|1|0|0|3|0|296; (*GB) gi|356548486|ref|XP_003542632.1| (e_value=3e-73) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Glycine max];; (*TAIR) AT2G13290.2 (e_value=3e-64) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr2:5512058-5513143 FORWARD LENGTH=361;; (*ITAG) Solyc07g008030.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2741163-2742284 transcript_region:SL2.40ch07:2741163..2742284+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7L020_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00045926g0003.1 protein AED:0.46 eAED:0.61 QI:0|0|0|1|0|0|3|0|74; (*GB) gi|255572485|ref|XP_002527177.1| (e_value=1e-20) acetylglucosaminyltransferase, putative [Ricinus communis];; (*TAIR) AT2G13290.2 (e_value=2e-18) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr2:5512058-5513143 FORWARD LENGTH=361;; (*ITAG) Solyc07g008030.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:2741163-2742284 transcript_region:SL2.40ch07:2741163..2742284+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7L020_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00015485g0015.1 protein AED:0.08 eAED:0.10 QI:0|0|0|1|0.5|1|3|0|158; (*GB) gi|255580951|ref|XP_002531294.1| (e_value=8e-27) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G28750.1 (e_value=4e-24) | Symbols: | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE LENGTH=147;; (*ITAG) Solyc01g097310.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:79966500-79970598 transcript_region:SL2.40ch01:79966500..79970598+ go_terms:GO:0016020,GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D7DW94_NOSA0); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0016020,GO:0015031,GO:0016021 NbS00015485g0014.1 protein AED:0.26 eAED:0.26 QI:198|1|1|1|0|0.25|4|221|128; (*GB) gi|388501348|gb|AFK38740.1| (e_value=3e-65) unknown [Medicago truncatula];; (*SWP) sp|Q9M4B5|PFD4_ARATH (e_value=5e-60) Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1 SV=3;; (*TAIR) AT1G08780.1 (e_value=3e-61) | Symbols: AIP3, PFD4 | ABI3-interacting protein 3 | chr1:2809925-2811126 REVERSE LENGTH=129;; (*ITAG) Solyc01g097300.2.1 (e_value=2e-75) genomic_reference:SL2.40ch01 gene_region:79961873-79966303 transcript_region:SL2.40ch01:79961873..79966303+ go_terms:GO:0015631,GO:0051087 functional_description:"Prefoldin subunit 4 (AHRD V1 ***- B6SLQ1_MAIZE); contains Interpro domain(s) IPR016661 Prefoldin, subunit 4 "; GO:0015631,GO:0051087 NbS00015485g0016.1 protein AED:0.19 eAED:0.21 QI:0|0.5|0.44|1|0.62|0.66|9|0|1474; (*GB) gi|225451358|ref|XP_002279923.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100267561 [Vitis vinifera];; (*SWP) sp|P0CB66|MED14_DICDI (e_value=4e-36) Putative mediator of RNA polymerase II transcription subunit 14 OS=Dictyostelium discoideum GN=med14 PE=3 SV=1;; (*TAIR) AT3G04740.1 (e_value=0.0) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbS00016881g0014.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|382; (*GB) gi|225442367|ref|XP_002276490.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266878 [Vitis vinifera];; (*TAIR) AT5G11730.1 (e_value=5e-173) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:3780963-3782473 FORWARD LENGTH=386;; (*ITAG) Solyc03g121280.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63487613-63490561 transcript_region:SL2.40ch03:63487613..63490561- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00016881g0012.1 protein AED:0.16 eAED:0.16 QI:705|1|1|1|0.75|0.6|5|193|766; (*GB) gi|224070734|ref|XP_002303218.1| (e_value=4e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|O82804|ELF3_ARATH (e_value=5e-41) Protein EARLY FLOWERING 3 OS=Arabidopsis thaliana GN=ELF3 PE=1 SV=1;; (*TAIR) AT2G25930.1 (e_value=4e-42) | Symbols: ELF3, PYK20 | hydroxyproline-rich glycoprotein family protein | chr2:11059459-11063178 FORWARD LENGTH=695;; (*ITAG) Solyc06g062480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35809650-35813216 transcript_region:SL2.40ch06:35809650..35813216+ functional_description:"Early flowering 3 (AHRD V1 ***- Q6UEI3_MESCR)"; NbS00016881g0011.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.66|1|1|1|3|31|212; (*GB) gi|28916459|gb|AAO59435.1| (e_value=1e-117) putative developmental protein [Nicotiana benthamiana];; (*SWP) sp|O96552|CHMP1_DICDI (e_value=5e-52) Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1;; (*TAIR) AT1G17730.1 (e_value=7e-120) | Symbols: VPS46.1, CHMP1B | vacuolar protein sorting 46.1 | chr1:6099210-6100153 FORWARD LENGTH=203;; (*ITAG) Solyc06g062510.2.1 (e_value=5e-129) genomic_reference:SL2.40ch06 gene_region:35823172-35824382 transcript_region:SL2.40ch06:35823172..35824382+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 1b (AHRD V1 ***- B6T9W6_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00002553g0007.1 protein AED:0.24 eAED:0.27 QI:0|0.6|0.5|0.93|0.66|0.75|16|0|526; (*GB) gi|359487759|ref|XP_003633645.1| (e_value=0.0) PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=0.0) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=0.0) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc01g099280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81312318-81324913 transcript_region:SL2.40ch01:81312318..81324913- go_terms:GO:0019901,GO:0004679 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0019901,GO:0004679 NbS00017582g0005.1 protein AED:0.08 eAED:0.08 QI:866|1|0.8|1|0.75|0.6|5|0|125; (*GB) gi|255559909|ref|XP_002520973.1| (e_value=3e-79) histone acetyltransferase gcn5, putative [Ricinus communis];; (*SWP) sp|Q9AR19|GCN5_ARATH (e_value=2e-77) Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1;; (*TAIR) AT3G54610.1 (e_value=2e-78) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045400.1.1 (e_value=2e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00035993g0004.1 protein AED:0.56 eAED:0.64 QI:91|0|0|0.5|1|0.75|4|0|63; (*GB) gi|255569436|ref|XP_002525685.1| (e_value=2e-27) replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis];; (*SWP) sp|Q54BN3|RFC3_DICDI (e_value=4e-15) Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1;; (*TAIR) AT5G27740.1 (e_value=3e-28) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc01g020440.2.1 (e_value=7e-33) genomic_reference:SL2.40ch01 gene_region:30867272-30881047 transcript_region:SL2.40ch01:30867272..30881047- go_terms:GO:0005515,GO:0003689 functional_description:"Replication factor C subunit 5 (AHRD V1 ***- B6T5I0_MAIZE); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005515,GO:0003689 NbS00034292g0003.1 protein AED:0.12 eAED:0.12 QI:270|1|1|1|0.33|0.5|4|236|110 NbS00031327g0001.1 protein AED:0.00 eAED:0.25 QI:0|-1|0|1|-1|1|1|257|464; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=7e-160) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=6e-141) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=4e-142) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc10g005960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00029181g0008.1 protein AED:0.21 eAED:0.23 QI:0|0.44|0.6|1|0.88|0.9|10|207|328; (*GB) gi|359485762|ref|XP_003633330.1| (e_value=8e-106) PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Vitis vinifera];; (*SWP) sp|Q8VYE2|TIM50_ARATH (e_value=7e-78) Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1;; (*TAIR) AT1G55900.2 (e_value=5e-79) | Symbols: TIM50 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:20903163-20905420 FORWARD LENGTH=370;; (*ITAG) Solyc10g006020.2.1 (e_value=7e-135) genomic_reference:SL2.40ch10 gene_region:769462-778426 transcript_region:SL2.40ch10:769462..778426+ functional_description:"Mitochondrial import inner membrane translocase subunit tim50 (AHRD V1 *--- C8V8E4_EMENI); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00029181g0007.1 protein AED:0.28 eAED:0.28 QI:99|1|1|1|0.5|0.2|5|209|180; (*GB) gi|225461868|ref|XP_002265045.1| (e_value=5e-68) PREDICTED: 30S ribosomal protein S10, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9M4Y3|RR10_MESCR (e_value=1e-67) 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1;; (*TAIR) AT3G13120.2 (e_value=1e-65) | Symbols: | Ribosomal protein S10p/S20e family protein | chr3:4220310-4221526 REVERSE LENGTH=191;; (*ITAG) Solyc10g006030.2.1 (e_value=2e-104) genomic_reference:SL2.40ch10 gene_region:779582-782983 transcript_region:SL2.40ch10:779582..782983+ go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S10-like (AHRD V1 ***- A1YMX4_BRACM); contains Interpro domain(s) IPR005731 Ribosomal protein S10, bacterial "; GO:0005840,GO:0015935 NbS00000722g0008.1 protein AED:0.33 eAED:0.33 QI:156|1|1|1|0|0|2|399|145; (*GB) gi|225461030|ref|XP_002281236.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100252146 [Vitis vinifera];; (*TAIR) AT5G54855.1 (e_value=9e-72) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:22282902-22284251 FORWARD LENGTH=146;; (*ITAG) Solyc12g005150.1.1 (e_value=1e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:112568-115959 transcript_region:SL2.40ch12:112568..115959- functional_description:"Pollen ole e 1 allergen and extensin family protein (AHRD V1 ***- D7MUX1_ARALY); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00000722g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|339; (*GB) gi|255563945|ref|XP_002522972.1| (e_value=1e-133) ubiquitin-conjugating enzyme variant, putative [Ricinus communis];; (*SWP) sp|A6QLM0|TM189_BOVIN (e_value=9e-16) Transmembrane protein 189 OS=Bos taurus GN=TMEM189 PE=2 SV=1;; (*TAIR) AT4G27030.1 (e_value=2e-121) | Symbols: FAD4, FADA | fatty acid desaturase A | chr4:13571951-13572922 FORWARD LENGTH=323;; (*ITAG) Solyc07g064410.1.1 (e_value=2e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63807705-63808703 transcript_region:SL2.40ch07:63807705..63808703- functional_description:"Ubiquitin-conjugating enzyme-like protein (AHRD V1 *--- A4HBP2_LEIBR); contains Interpro domain(s) IPR019547 Kua-ubiquitin conjugating enzyme hybrid, localisation "; NbS00006695g0010.1 protein AED:0.12 eAED:0.22 QI:40|0|0|1|0|0.33|3|0|140; (*GB) gi|356546168|ref|XP_003541503.1| (e_value=4e-70) PREDICTED: peroxidase 25-like [Glycine max];; (*SWP) sp|O80822|PER25_ARATH (e_value=5e-54) Peroxidase 25 OS=Arabidopsis thaliana GN=PER25 PE=2 SV=2;; (*TAIR) AT2G41480.1 (e_value=5e-55) | Symbols: | Peroxidase superfamily protein | chr2:17296986-17298729 REVERSE LENGTH=341;; (*ITAG) Solyc02g064970.2.1 (e_value=3e-70) genomic_reference:SL2.40ch02 gene_region:30673468-30675393 transcript_region:SL2.40ch02:30673468..30675393+ go_terms:GO:0004601 functional_description:"Peroxidase (AHRD V1 **** Q43499_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00006695g0009.1 protein AED:0.88 eAED:0.88 QI:0|0|0|0.33|0.5|0.66|3|0|94 NbS00033523g0003.1 protein AED:0.10 eAED:0.10 QI:0|1|0.66|1|1|1|3|0|324; (*GB) gi|255571750|ref|XP_002526818.1| (e_value=2e-125) NAC domain-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FWX2|NAC7_ARATH (e_value=3e-83) NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2;; (*TAIR) AT1G71930.1 (e_value=2e-113) | Symbols: VND7, ANAC030 | vascular related NAC-domain protein 7 | chr1:27076205-27077829 FORWARD LENGTH=324;; (*ITAG) Solyc06g065410.2.1 (e_value=4e-168) genomic_reference:SL2.40ch06 gene_region:37220630-37222822 transcript_region:SL2.40ch06:37220630..37222822+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9MW79_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00033523g0007.1 protein AED:0.24 eAED:0.26 QI:0|0.87|0.66|1|0.62|0.66|9|390|394; (*GB) gi|350537731|ref|NP_001234051.1| (e_value=0.0) dehydroquinate dehydratase/shikimate:NADP oxidoreductase [Solanum lycopersicum];; (*SWP) sp|Q9SQT8|DHQSD_ARATH (e_value=3e-163) Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1;; (*TAIR) AT3G06350.1 (e_value=3e-164) | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative | chr3:1924536-1927701 REVERSE LENGTH=603;; (*ITAG) Solyc01g067750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69081973-69096361 transcript_region:SL2.40ch01:69081973..69096361+ go_terms:GO:0008152,GO:0005737,GO:0003855,GO:0055114 functional_description:"Shikimate dehydrogenase (AHRD V1 ***- B6TSW1_MAIZE); contains Interpro domain(s) IPR001381 Dehydroquinase class I "; GO:0008152,GO:0005737,GO:0003855,GO:0055114 NbS00037679g0004.1 protein AED:0.09 eAED:0.09 QI:232|0.85|0.75|1|0.85|0.87|8|0|608; (*GB) gi|255566207|ref|XP_002524091.1| (e_value=0.0) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q06850|CDPK1_ARATH (e_value=0.0) Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1;; (*TAIR) AT5G04870.1 (e_value=0.0) | Symbols: CPK1, ATCPK1 | calcium dependent protein kinase 1 | chr5:1417015-1419877 REVERSE LENGTH=610;; (*ITAG) Solyc01g006840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1410577-1414084 transcript_region:SL2.40ch01:1410577..1414084- go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase 26 (AHRD V1 **** B9H9M4_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00039930g0002.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|513; (*GB) gi|297735522|emb|CBI17962.3| (e_value=1e-147) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81117|C94A1_VICSA (e_value=1e-134) Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2;; (*TAIR) AT5G63450.1 (e_value=1e-99) | Symbols: CYP94B1 | cytochrome P450, family 94, subfamily B, polypeptide 1 | chr5:25408987-25410519 REVERSE LENGTH=510;; (*ITAG) Solyc07g006890.1.1 (e_value=4e-140) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:1747021-1748529 transcript_region:SL2.40ch07:1747021..1748529+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00042044g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|535; (*GB) gi|359480765|ref|XP_002273522.2| (e_value=0.0) PREDICTED: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8GXR9|DHNA_ARATH (e_value=0.0) NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2;; (*TAIR) AT5G08740.1 (e_value=0.0) | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848752-2851323 REVERSE LENGTH=519;; (*ITAG) Solyc03g043750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:11261685-11271541 transcript_region:SL2.40ch03:11261685..11271541+ go_terms:GO:0003954 functional_description:"FAD-dependent pyridine nucleotide-disulphide oxidoreductase (AHRD V1 ***- A0YND6_LYNSP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0003954 NbS00042044g0008.1 protein AED:0.03 eAED:0.11 QI:0|0|0|1|0|0|3|0|418; (*GB) gi|359486514|ref|XP_002271028.2| (e_value=3e-73) PREDICTED: uncharacterized protein LOC100255315 [Vitis vinifera];; (*TAIR) AT1G07280.3 (e_value=5e-60) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2238505-2240991 FORWARD LENGTH=552;; (*ITAG) Solyc05g052700.2.1 (e_value=3e-122) genomic_reference:SL2.40ch05 gene_region:62051692-62054811 transcript_region:SL2.40ch05:62051692..62054811+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- Q7MVN6_PORGI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00034561g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|362; (*GB) gi|356519832|ref|XP_003528573.1| (e_value=3e-150) PREDICTED: uncharacterized protein LOC100806351 [Glycine max];; (*TAIR) AT1G26650.1 (e_value=3e-133) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G69430.1); Has 205 Blast hits to 204 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9210335-9211342 FORWARD LENGTH=335;; (*ITAG) Solyc05g012870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6018682-6019749 transcript_region:SL2.40ch05:6018682..6019749+ functional_description:"Genomic DNA chromosome 5 P1 clone MFB13 (AHRD V1 ***- Q9FLJ9_ARATH)"; NbS00034561g0001.1 protein AED:0.39 eAED:0.60 QI:0|0|0|1|1|1|4|0|161; (*ITAG) Solyc05g012810.1.1 (e_value=6e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:5972679-5973389 transcript_region:SL2.40ch05:5972679..5973389+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031283g0005.1 protein AED:0.22 eAED:0.27 QI:367|0.28|0.5|1|0.42|0.37|8|236|588; (*GB) gi|296088921|emb|CBI38481.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23491|PP315_ARATH (e_value=2e-110) Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2;; (*TAIR) AT4G16470.1 (e_value=1e-111) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9287862-9289541 REVERSE LENGTH=501;; (*ITAG) Solyc11g012480.1.1 (e_value=9e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5312806-5318311 transcript_region:SL2.40ch11:5312806..5318311+ go_terms:GO:0005524 functional_description:"Thymidine kinase (AHRD V1 ***- B9IH47_POPTR); contains Interpro domain(s) IPR001267 Thymidine kinase "; GO:0005524 NbS00048414g0002.1 protein AED:0.00 eAED:0.00 QI:11|1|1|1|0.5|0.33|3|14|106; (*GB) gi|255573893|ref|XP_002527865.1| (e_value=6e-23) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc09g013090.2.1 (e_value=2e-37) genomic_reference:SL2.40ch09 gene_region:5495093-5499967 transcript_region:SL2.40ch09:5495093..5499967+ functional_description:"OTU-like cysteine protease family protein expressed (AHRD V1 **-- Q10NL4_ORYSJ); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00000041g0001.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.33|1|1|3|0|151; (*ITAG) Solyc06g011460.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00027872g0006.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|346; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=7e-176) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*SWP) sp|P52409|E13B_WHEAT (e_value=1e-69) Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1;; (*TAIR) AT3G55430.1 (e_value=5e-89) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449;; (*ITAG) Solyc07g005330.2.1 (e_value=1e-178) genomic_reference:SL2.40ch07 gene_region:261349-264657 transcript_region:SL2.40ch07:261349..264657- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00027872g0009.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.25|0.75|0.33|0.5|4|0|600; (*GB) gi|297734029|emb|CBI15276.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc05g006990.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1582054-1588984 transcript_region:SL2.40ch05:1582054..1588984+ go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00009791g0010.1 protein AED:0.12 eAED:0.18 QI:56|0|0|0.5|1|1|4|0|259; (*ITAG) Solyc10g079900.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60684174-60686444 transcript_region:SL2.40ch10:60684174..60686444- functional_description:"Unknown Protein (AHRD V1)"; NbS00009791g0009.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|614; (*GB) gi|255586158|ref|XP_002533739.1| (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=0.0) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=0.0) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g063850.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63428545-63430873 transcript_region:SL2.40ch07:63428545..63430873+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **** B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00031326g0009.1 protein AED:0.09 eAED:0.09 QI:579|1|1|1|0.6|0.63|11|279|285; (*GB) gi|225444999|ref|XP_002282931.1| (e_value=1e-115) PREDICTED: histone acetyltransferase type B catalytic subunit [Vitis vinifera];; (*SWP) sp|Q9FJT8|HATB_ARATH (e_value=8e-97) Histone acetyltransferase type B catalytic subunit OS=Arabidopsis thaliana GN=HAG2 PE=2 SV=1;; (*TAIR) AT5G56740.1 (e_value=6e-98) | Symbols: HAG2, HAC7, HAG02, HAC07 | histone acetyltransferase of the GNAT family 2 | chr5:22953009-22955577 REVERSE LENGTH=467;; (*ITAG) Solyc02g068580.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33120854-33122260 transcript_region:SL2.40ch02:33120854..33122260+ go_terms:GO:0010485 functional_description:"Histone acetyltransferase type B catalytic subunit (AHRD V1 **** D3PHV3_9MAXI); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010485 NbS00031326g0008.1 protein AED:0.19 eAED:0.24 QI:125|0.33|0.28|0.71|0.5|0.57|7|380|176; (*GB) gi|225445007|ref|XP_002283005.1| (e_value=1e-53) PREDICTED: uncharacterized protein LOC100262721 [Vitis vinifera];; (*TAIR) AT4G26240.1 (e_value=1e-45) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13287011-13288896 REVERSE LENGTH=198;; (*ITAG) Solyc08g041690.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:26771943-26772133 transcript_region:SL2.40ch08:26771943..26772133+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031326g0011.1 protein AED:0.27 eAED:0.31 QI:0|0|0.5|1|0|0.5|2|531|108; (*GB) gi|1173027|sp|P46290.1|RL31_NICGU (e_value=4e-49) RecName: Full=60S ribosomal protein L31;; (*SWP) sp|P46290|RL31_NICGU (e_value=1e-50) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT5G56710.1 (e_value=5e-45) | Symbols: | Ribosomal protein L31e family protein | chr5:22944003-22944767 REVERSE LENGTH=119;; (*ITAG) Solyc12g008720.1.1 (e_value=2e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2087594-2089246 transcript_region:SL2.40ch12:2087594..2089246+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00056346g0001.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|1813|619; (*GB) gi|255536795|ref|XP_002509464.1| (e_value=0.0) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|P56820|EIF3D_ARATH (e_value=0.0) Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1;; (*TAIR) AT4G20980.4 (e_value=0.0) | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr4:11216997-11218772 FORWARD LENGTH=591;; (*ITAG) Solyc02g078120.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37474003-37475736 transcript_region:SL2.40ch02:37474003..37475736- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 7 (AHRD V1 ***- Q9FKV6_ARATH); contains Interpro domain(s) IPR007783 Eukaryotic translation initiation factor 3, subunit 7 "; GO:0005515 NbS00022774g0009.1 protein AED:0.13 eAED:0.14 QI:0|0.25|0|1|0.25|0.2|5|0|687; (*GB) gi|359483763|ref|XP_002265984.2| (e_value=0.0) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Vitis vinifera];; (*SWP) sp|C0LGK9|Y2242_ARATH (e_value=3e-83) Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1;; (*TAIR) AT5G45800.1 (e_value=0.0) | Symbols: MEE62 | Leucine-rich repeat protein kinase family protein | chr5:18575765-18578972 REVERSE LENGTH=666;; (*ITAG) Solyc02g072520.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36281095-36284514 transcript_region:SL2.40ch02:36281095..36284514- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00010403g0009.1 protein AED:0.10 eAED:0.10 QI:136|1|1|1|1|1|5|357|903; (*GB) gi|296089241|emb|CBI39013.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04893|AGLU_SPIOL (e_value=0.0) Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT5G11720.1 (e_value=0.0) | Symbols: | Glycosyl hydrolases family 31 protein | chr5:3776840-3780025 FORWARD LENGTH=902;; (*ITAG) Solyc04g009630.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3009140-3012779 transcript_region:SL2.40ch04:3009140..3012779+ go_terms:GO:0004558 functional_description:"Alpha-glucosidase 1 (AHRD V1 **** O22444_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00010403g0010.1 protein AED:0.41 eAED:0.41 QI:0|1|0.5|1|1|1|2|0|258; (*GB) gi|225450248|ref|XP_002268686.1| (e_value=1e-128) PREDICTED: uncharacterized protein ynbD [Vitis vinifera];; (*SWP) sp|P76093|YNBD_ECOLI (e_value=3e-12) Uncharacterized protein ynbD OS=Escherichia coli (strain K12) GN=ynbD PE=3 SV=1;; (*ITAG) Solyc04g009700.2.1 (e_value=3e-163) genomic_reference:SL2.40ch04 gene_region:3045839-3049663 transcript_region:SL2.40ch04:3045839..3049663+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase catalytic domain containing protein expressed (AHRD V1 ***- Q2QXL1_ORYSJ); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00018452g0002.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.75|1|1|4|0|564; (*GB) gi|359497760|ref|XP_003635632.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=2e-60) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G16490.1 (e_value=4e-173) | Symbols: | ARM repeat superfamily protein | chr4:9293891-9295530 REVERSE LENGTH=472;; (*ITAG) Solyc11g012440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5278466-5280485 transcript_region:SL2.40ch11:5278466..5280485+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00037583g0002.1 protein AED:0.00 eAED:0.00 QI:124|1|1|1|0.5|0.33|3|214|325; (*GB) gi|225454298|ref|XP_002276925.1| (e_value=5e-62) PREDICTED: WRKY transcription factor 22 [Vitis vinifera];; (*SWP) sp|O04609|WRK22_ARATH (e_value=4e-54) WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1;; (*TAIR) AT4G01250.1 (e_value=3e-55) | Symbols: WRKY22, AtWRKY22 | WRKY family transcription factor | chr4:522839-524129 REVERSE LENGTH=298;; (*ITAG) Solyc01g095100.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:78259686-78261279 transcript_region:SL2.40ch01:78259686..78261279+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 23 (AHRD V1 ***- C9DI12_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00007233g0001.1 protein AED:0.17 eAED:0.17 QI:129|1|1|1|0.4|0.5|6|338|245; (*GB) gi|255570438|ref|XP_002526178.1| (e_value=8e-115) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8L9J7|SWET1_ARATH (e_value=8e-111) Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1;; (*TAIR) AT1G21460.1 (e_value=6e-112) | Symbols: SWEET1, AtSWEET1 | Nodulin MtN3 family protein | chr1:7512030-7513281 REVERSE LENGTH=247;; (*ITAG) Solyc04g064610.2.1 (e_value=1e-143) genomic_reference:SL2.40ch04 gene_region:54892730-54894564 transcript_region:SL2.40ch04:54892730..54894564- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DROPS); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00016975g0005.1 protein AED:0.38 eAED:0.38 QI:0|1|0.75|1|1|0.75|4|0|214; (*GB) gi|225448679|ref|XP_002280180.1| (e_value=6e-97) PREDICTED: transcription factor RF2b [Vitis vinifera];; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=6e-65) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT1G06850.1 (e_value=6e-62) | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper 52 | chr1:2105233-2106518 FORWARD LENGTH=337;; (*ITAG) Solyc06g048630.2.1 (e_value=9e-129) genomic_reference:SL2.40ch06 gene_region:27901278-27907435 transcript_region:SL2.40ch06:27901278..27907435- go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LF63_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00005846g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.55|0.88|0.87|0.77|9|414|403; (*GB) gi|224147353|ref|XP_002336458.1| (e_value=2e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJL3|FKB65_ARATH (e_value=2e-86) Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1;; (*TAIR) AT5G48570.1 (e_value=2e-87) | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr5:19690746-19693656 REVERSE LENGTH=578;; (*ITAG) Solyc10g078260.1.1 (e_value=1e-119) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59418175-59421171 transcript_region:SL2.40ch10:59418175..59421171- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *--- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00009359g0005.1 protein AED:0.23 eAED:0.24 QI:0|0|0.5|1|0|0|2|0|171; (*GB) gi|224109144|ref|XP_002315099.1| (e_value=7e-12) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g008840.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3029621-3032194 transcript_region:SL2.40ch11:3029621..3032194- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00009359g0004.1 protein AED:0.45 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|88; (*ITAG) Solyc11g008840.1.1 (e_value=9e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3029621-3032194 transcript_region:SL2.40ch11:3029621..3032194- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00061590g0005.1 protein AED:0.01 eAED:0.01 QI:214|1|1|1|0.5|0.57|7|120|225; (*GB) gi|359475200|ref|XP_002282080.2| (e_value=4e-106) PREDICTED: B3 domain-containing protein At3g19184-like [Vitis vinifera];; (*SWP) sp|Q1G3M3|Y3918_ARATH (e_value=9e-86) B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=7e-87) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108140.2.1 (e_value=5e-135) genomic_reference:SL2.40ch01 gene_region:87261228-87266226 transcript_region:SL2.40ch01:87261228..87266226+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 ***- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00020605g0006.1 protein AED:0.13 eAED:0.13 QI:209|0.85|0.87|1|1|1|8|304|307; (*GB) gi|350534814|ref|NP_001233905.1| (e_value=0.0) B2-type cyclin dependent kinase [Solanum lycopersicum];; (*SWP) sp|Q38775|CDC2D_ANTMA (e_value=0.0) Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1;; (*TAIR) AT1G20930.1 (e_value=0.0) | Symbols: CDKB2;2 | cyclin-dependent kinase B2;2 | chr1:7292752-7294664 REVERSE LENGTH=315;; (*ITAG) Solyc04g082840.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63962851-63964812 transcript_region:SL2.40ch04:63962851..63964812- go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** D0P087_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00020605g0009.1 protein AED:0.19 eAED:0.20 QI:774|0.75|0.77|1|0.62|0.66|9|773|430; (*GB) gi|224065633|ref|XP_002301894.1| (e_value=2e-167) predicted protein [Populus trichocarpa];; (*TAIR) AT1G20925.1 (e_value=1e-150) | Symbols: | Auxin efflux carrier family protein | chr1:7289973-7292507 FORWARD LENGTH=472;; (*ITAG) Solyc04g082830.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63958149-63962637 transcript_region:SL2.40ch04:63958149..63962637+ go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00020510g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|225456402|ref|XP_002280540.1| (e_value=8e-46) PREDICTED: uncharacterized protein LOC100261037 [Vitis vinifera];; (*TAIR) AT1G32583.1 (e_value=2e-44) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11787351-11788103 FORWARD LENGTH=179;; (*ITAG) Solyc11g012650.1.1 (e_value=2e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5424760-5426139 transcript_region:SL2.40ch11:5424760..5426139- functional_description:"TPD1 (AHRD V1 *-*- Q6TLJ2_ARATH)"; NbS00020510g0008.1 protein AED:0.28 eAED:0.28 QI:155|0.94|1|1|0.88|0.89|19|279|422; (*GB) gi|17402533|dbj|BAB78700.1| (e_value=0.0) UDP-glucose pyrophosphorylase [Nicotiana tabacum];; (*SWP) sp|P19595|UGPA_SOLTU (e_value=0.0) UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3;; (*TAIR) AT3G03250.1 (e_value=0.0) | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE 1 | chr3:749761-754014 REVERSE LENGTH=469;; (*ITAG) Solyc11g011960.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4912805-4919067 transcript_region:SL2.40ch11:4912805..4919067- go_terms:GO:0008152 functional_description:"UTP-glucose 1 phosphate uridylyltransferase (AHRD V1 ***- B3VDY8_EUCGR); contains Interpro domain(s) IPR016267 UTP--glucose-1-phosphate uridylyltransferase, subgroup "; GO:0008152 NbS00036523g0005.1 protein AED:0.31 eAED:0.31 QI:201|0.66|0.85|1|0.33|0.57|7|314|204; (*GB) gi|358348946|ref|XP_003638502.1| (e_value=2e-103) Inosine triphosphate pyrophosphatase [Medicago truncatula];; (*SWP) sp|C5WZH0|ITPA_SORBI (e_value=1e-101) Inosine triphosphate pyrophosphatase OS=Sorghum bicolor GN=Sb01g020160 PE=2 SV=1;; (*TAIR) AT4G13720.1 (e_value=7e-98) | Symbols: | Inosine triphosphate pyrophosphatase family protein | chr4:7967166-7968894 REVERSE LENGTH=206;; (*ITAG) Solyc09g091420.2.1 (e_value=2e-122) genomic_reference:SL2.40ch09 gene_region:66045412-66049624 transcript_region:SL2.40ch09:66045412..66049624+ go_terms:GO:0047429 functional_description:"Nucleoside-triphosphatase (AHRD V1 **** B2VUE6_PYRTR); contains Interpro domain(s) IPR002637 Ham1-like protein "; GO:0047429 NbS00038347g0001.1 protein AED:0.12 eAED:0.12 QI:559|0.66|0.25|1|1|1|4|0|641; (*GB) gi|332071134|gb|AED99885.1| (e_value=0.0) glycosyltransferase [Panax notoginseng];; (*SWP) sp|Q9LJP4|CSLC4_ARATH (e_value=0.0) Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1;; (*TAIR) AT3G28180.1 (e_value=0.0) | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellulose-synthase-like C4 | chr3:10506110-10509067 FORWARD LENGTH=673;; (*ITAG) Solyc02g089640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45969254-45972519 transcript_region:SL2.40ch02:45969254..45972519- go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML)"; GO:0016759 NbS00003788g0010.1 protein AED:0.19 eAED:0.25 QI:47|1|0.33|1|0|0|3|0|236; (*GB) gi|356530687|ref|XP_003533912.1| (e_value=6e-68) PREDICTED: homeobox-leucine zipper protein HAT14-like [Glycine max];; (*SWP) sp|P46665|HAT14_ARATH (e_value=3e-59) Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3;; (*TAIR) AT5G06710.1 (e_value=2e-60) | Symbols: HAT14 | homeobox from Arabidopsis thaliana | chr5:2068305-2070284 REVERSE LENGTH=336;; (*ITAG) Solyc10g080540.1.1 (e_value=8e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61109021-61111955 transcript_region:SL2.40ch10:61109021..61111955+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 ***- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00003788g0009.1 protein AED:0.07 eAED:0.07 QI:0|1|1|1|1|1|3|448|350; (*GB) gi|356504880|ref|XP_003521222.1| (e_value=4e-180) PREDICTED: LOW QUALITY PROTEIN: activator of 90 kDa heat shock protein ATPase homolog 1-like [Glycine max];; (*SWP) sp|Q55DB6|AHSA_DICDI (e_value=4e-44) Activator of 90 kDa heat shock protein ATPase homolog OS=Dictyostelium discoideum GN=ahsa PE=2 SV=1;; (*TAIR) AT3G12050.1 (e_value=1e-174) | Symbols: | Aha1 domain-containing protein | chr3:3839289-3841303 FORWARD LENGTH=360;; (*ITAG) Solyc10g078930.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59896781-59900058 transcript_region:SL2.40ch10:59896781..59900058- go_terms:GO:0051087,GO:0001671 functional_description:"Activator of heat shock protein ATPase homolog 1 (AHRD V1 **-* D3PJW3_9MAXI); contains Interpro domain(s) IPR015310 Activator of Hsp90 ATPase, N-terminal "; GO:0051087,GO:0001671 NbS00012021g0002.1 protein AED:0.28 eAED:0.28 QI:122|1|0.66|1|0|0.33|3|0|128; (*GB) gi|359488259|ref|XP_002280667.2| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100249788 [Vitis vinifera];; (*ITAG) Solyc02g086170.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:43498956-43501326 transcript_region:SL2.40ch02:43498956..43501326- functional_description:"Unknown Protein (AHRD V1)"; NbS00022852g0001.1 protein AED:0.09 eAED:0.09 QI:142|1|1|1|0.63|0.41|12|1583|258; (*GB) gi|193290712|gb|ACF17664.1| (e_value=3e-127) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SJD4|LACS8_ARATH (e_value=4e-89) Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1;; (*TAIR) AT2G04350.2 (e_value=3e-90) | Symbols: LACS8 | AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720;; (*ITAG) Solyc12g009040.1.1 (e_value=2e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2335997-2339861 transcript_region:SL2.40ch12:2335997..2339861+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase 4 (AHRD V1 **** C0HA93_SALSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00022852g0005.1 protein AED:0.00 eAED:0.00 QI:286|1|1|1|0.8|0.66|6|393|251; (*GB) gi|224087951|ref|XP_002308270.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93ZH2|NFYA3_ARATH (e_value=4e-40) Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2;; (*TAIR) AT1G72830.1 (e_value=3e-41) | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor Y, subunit A3 | chr1:27405699-27407088 REVERSE LENGTH=340;; (*ITAG) Solyc12g009050.1.1 (e_value=2e-166) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2340487-2342273 transcript_region:SL2.40ch12:2340487..2342273- go_terms:GO:0005634,GO:0016602 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 *-*- B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634,GO:0016602 NbS00036155g0005.1 protein AED:0.45 eAED:0.49 QI:0|0|0|0.87|0.28|0.37|8|0|537; (*GB) gi|225440783|ref|XP_002275884.1| (e_value=1e-128) PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Vitis vinifera];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=1e-95) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=8e-97) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbS00046086g0011.1 protein AED:0.25 eAED:0.26 QI:0|0.66|0.25|1|0.66|0.5|4|0|336; (*GB) gi|225448079|ref|XP_002273560.1| (e_value=4e-125) PREDICTED: uncharacterized protein LOC100256690 [Vitis vinifera];; (*TAIR) AT2G02880.1 (e_value=1e-113) | Symbols: | mucin-related | chr2:841303-843151 FORWARD LENGTH=314;; (*ITAG) Solyc01g010570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5581068-5585872 transcript_region:SL2.40ch01:5581068..5585872- functional_description:"Mucin-like protein (Fragment) (AHRD V1 ***- B0FSK5_9MAGN)"; NbS00046086g0008.1 protein AED:0.19 eAED:0.19 QI:23|0.71|0.37|0.87|0.85|0.87|8|0|412; (*GB) gi|113205376|gb|AAU93592.2| (e_value=0.0) uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum];; (*TAIR) AT2G46420.1 (e_value=5e-163) | Symbols: | Plant protein 1589 of unknown function | chr2:19054891-19056830 FORWARD LENGTH=363;; (*ITAG) Solyc01g010520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5540492-5544218 transcript_region:SL2.40ch01:5540492..5544218+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 ***- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00008770g0001.1 protein AED:0.27 eAED:0.30 QI:0|1|0.66|1|0|0.66|3|0|334; (*GB) gi|225435608|ref|XP_002285629.1| (e_value=5e-123) PREDICTED: zinc finger CCCH domain-containing protein 14-like [Vitis vinifera];; (*SWP) sp|Q7F8R0|C3H14_ORYSJ (e_value=4e-90) Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1;; (*TAIR) AT5G06770.1 (e_value=1e-38) | Symbols: | KH domain-containing protein / zinc finger (CCCH type) family protein | chr5:2090937-2092787 REVERSE LENGTH=240;; (*ITAG) Solyc01g014850.2.1 (e_value=6e-125) genomic_reference:SL2.40ch01 gene_region:15586445-15597388 transcript_region:SL2.40ch01:15586445..15597388- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 14 (AHRD V1 ***- C3H14_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003700 NbS00008770g0004.1 protein AED:0.20 eAED:0.64 QI:0|1|0|1|0|0.5|2|0|89 NbS00031703g0005.1 protein AED:0.10 eAED:0.10 QI:1|1|0.5|1|1|1|2|0|240; (*GB) gi|255563124|ref|XP_002522566.1| (e_value=6e-70) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S7Y1|BH030_ARATH (e_value=2e-30) Transcription factor bHLH30 OS=Arabidopsis thaliana GN=BHLH30 PE=1 SV=1;; (*TAIR) AT1G68810.1 (e_value=1e-31) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25861289-25862882 FORWARD LENGTH=368;; (*ITAG) Solyc02g076920.2.1 (e_value=6e-123) genomic_reference:SL2.40ch02 gene_region:36606127-36608560 transcript_region:SL2.40ch02:36606127..36608560+ go_terms:GO:0030528 functional_description:"Transcription factor MYC2 (AHRD V1 *--* RAP1_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0030528 NbS00004246g0005.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|0|0|3|133|70 NbS00032620g0003.1 protein AED:0.05 eAED:0.05 QI:128|1|1|1|1|1|3|224|319; (*GB) gi|61697137|gb|AAX53172.1| (e_value=1e-170) peroxidase [Populus alba x Populus tremula var. glandulosa];; (*SWP) sp|Q9FLC0|PER52_ARATH (e_value=2e-140) Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1;; (*TAIR) AT5G05340.1 (e_value=1e-141) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc03g025380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7193903-7196417 transcript_region:SL2.40ch03:7193903..7196417+ go_terms:GO:0005515 functional_description:"Peroxidase (AHRD V1 ***- Q58GF4_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00026856g0002.1 protein AED:0.04 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|252; (*ITAG) Solyc01g109730.1.1 (e_value=2e-79) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016542g0005.1 protein AED:0.17 eAED:0.17 QI:406|0.87|1|1|1|1|9|167|317; (*GB) gi|356496467|ref|XP_003517089.1| (e_value=1e-146) PREDICTED: uncharacterized protein LOC100816554 [Glycine max];; (*TAIR) AT4G34660.3 (e_value=8e-120) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=317;; (*ITAG) Solyc08g074780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56082992-56096206 transcript_region:SL2.40ch08:56082992..56096206- go_terms:GO:0030276 functional_description:"Rho guanine nucleotide exchange factor 6 (AHRD V1 *--- ARHG6_CHICK); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00011555g0006.1 protein AED:0.03 eAED:0.03 QI:141|1|0.66|1|1|1|3|241|386; (*GB) gi|302398799|gb|ADL36694.1| (e_value=3e-83) GATA domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9FH57|GATA5_ARATH (e_value=5e-68) GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1;; (*TAIR) AT5G66320.2 (e_value=4e-69) | Symbols: GATA5 | GATA transcription factor 5 | chr5:26496208-26497309 REVERSE LENGTH=339;; (*ITAG) Solyc02g084590.2.1 (e_value=8e-112) genomic_reference:SL2.40ch02 gene_region:42256115-42257468 transcript_region:SL2.40ch02:42256115..42257468- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00011555g0007.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|2|0|74 NbS00001433g0007.1 protein AED:0.23 eAED:0.23 QI:233|0.75|0.76|0.92|0.58|0.61|13|0|373; (*GB) gi|255557925|ref|XP_002519991.1| (e_value=2e-103) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9VKM6|VPS72_DROME (e_value=4e-12) Vacuolar protein sorting-associated protein 72 homolog OS=Drosophila melanogaster GN=YL-1 PE=1 SV=1;; (*TAIR) AT2G36740.1 (e_value=4e-97) | Symbols: SWC2, ATSWC2 | sequence-specific DNA binding transcription factors;DNA binding;DNA binding | chr2:15407066-15409430 REVERSE LENGTH=365;; (*ITAG) Solyc04g009830.2.1 (e_value=9e-130) genomic_reference:SL2.40ch04 gene_region:3154104-3161025 transcript_region:SL2.40ch04:3154104..3161025- go_terms:GO:0005515 functional_description:"Stress responsive gene 6 protein Srg6 (AHRD V1 **-- Q8VWH9_HORVU); contains Interpro domain(s) IPR008895 YL1 nuclear "; GO:0005515 NbS00005885g0006.1 protein AED:0.08 eAED:0.08 QI:175|1|1|1|0.87|1|9|299|411; (*GB) gi|12229785|sp|O04937.1|DHEA_NICPL (e_value=0.0) RecName: Full=Glutamate dehydrogenase A; Short=GDH A;; (*SWP) sp|O04937|DHEA_NICPL (e_value=0.0) Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1;; (*TAIR) AT5G07440.2 (e_value=0.0) | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2356153-2358012 FORWARD LENGTH=411;; (*ITAG) Solyc03g094010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49163343-49166873 transcript_region:SL2.40ch03:49163343..49166873- go_terms:GO:0004353 functional_description:"Glutamate dehydrogenase (AHRD V1 **** Q94IA5_BRANA); contains Interpro domain(s) IPR014362 Glutamate dehydrogenase "; GO:0004353 NbS00005885g0005.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|3|0|72; (*ITAG) Solyc03g094000.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:49161329-49162572 transcript_region:SL2.40ch03:49161329..49162572- functional_description:"Light harvesting-like protein 3 (AHRD V1 **-- A9P991_POPTR)"; NbS00017064g0007.1 protein AED:0.06 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|601; (*GB) gi|225463775|ref|XP_002267653.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=2e-57) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT5G23400.1 (e_value=0.0) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:7880603-7882372 FORWARD LENGTH=589;; (*ITAG) Solyc04g008830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2438053-2439834 transcript_region:SL2.40ch04:2438053..2439834- go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00017064g0001.1 protein AED:0.15 eAED:0.15 QI:188|1|1|1|1|1|5|333|126; (*GB) gi|351724687|ref|NP_001237066.1| (e_value=2e-37) uncharacterized protein LOC100499862 [Glycine max];; (*SWP) sp|Q9LYK9|RS263_ARATH (e_value=9e-35) 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1;; (*TAIR) AT3G56340.1 (e_value=7e-36) | Symbols: | Ribosomal protein S26e family protein | chr3:20892309-20893343 REVERSE LENGTH=130;; (*ITAG) Solyc06g007470.2.1 (e_value=3e-43) genomic_reference:SL2.40ch06 gene_region:1479427-1482088 transcript_region:SL2.40ch06:1479427..1482088- go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00017064g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|356555162|ref|XP_003545905.1| (e_value=1e-21) PREDICTED: ribosomal L1 domain-containing protein 1-like [Glycine max];; (*TAIR) AT3G58660.1 (e_value=1e-23) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc04g008790.1.1 (e_value=4e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2424815-2425648 transcript_region:SL2.40ch04:2424815..2425648- go_terms:GO:0006396 functional_description:"LOC563247 protein (Fragment) (AHRD V1 **-- Q3B7F4_DANRE); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00017064g0004.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|71; (*GB) gi|356555162|ref|XP_003545905.1| (e_value=6e-18) PREDICTED: ribosomal L1 domain-containing protein 1-like [Glycine max];; (*TAIR) AT3G58660.1 (e_value=6e-15) | Symbols: | Ribosomal protein L1p/L10e family | chr3:21701574-21702914 FORWARD LENGTH=446;; (*ITAG) Solyc04g008790.1.1 (e_value=1e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2424815-2425648 transcript_region:SL2.40ch04:2424815..2425648- go_terms:GO:0006396 functional_description:"LOC563247 protein (Fragment) (AHRD V1 **-- Q3B7F4_DANRE); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0006396 NbS00017064g0018.1 protein AED:0.56 eAED:0.56 QI:0|1|0.5|1|0|0.5|2|43|53 NbS00017064g0013.1 protein AED:0.08 eAED:0.10 QI:0|0.66|0.75|1|1|1|4|531|129; (*GB) gi|225463791|ref|XP_002269925.1| (e_value=7e-56) PREDICTED: mitochondrial intermembrane space import and assembly protein 40 [Vitis vinifera];; (*SWP) sp|Q4P8D2|MIA40_USTMA (e_value=5e-13) Mitochondrial intermembrane space import and assembly protein 40 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MIA40 PE=3 SV=1;; (*TAIR) AT5G23395.1 (e_value=5e-45) | Symbols: MIA40 | Cox19-like CHCH family protein | chr5:7874848-7876091 REVERSE LENGTH=162;; (*ITAG) Solyc04g008770.2.1 (e_value=9e-73) genomic_reference:SL2.40ch04 gene_region:2416241-2420323 transcript_region:SL2.40ch04:2416241..2420323+ functional_description:"Mitochondrial intermembrane space import and assembly protein (AHRD V1 *-*- B6JXQ4_SCHJY); contains Interpro domain(s) IPR010625 CHCH "; NbS00017064g0019.1 protein AED:0.17 eAED:0.17 QI:0|0.87|0.77|0.88|1|1|9|171|234; (*GB) gi|359484115|ref|XP_002267697.2| (e_value=1e-62) PREDICTED: high mobility group B protein 7-like [Vitis vinifera];; (*SWP) sp|Q8LDF9|HMGB7_ARATH (e_value=2e-41) High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1;; (*TAIR) AT5G23420.1 (e_value=2e-42) | Symbols: HMGB6 | high-mobility group box 6 | chr5:7888712-7890111 REVERSE LENGTH=241;; (*ITAG) Solyc04g008820.2.1 (e_value=4e-97) genomic_reference:SL2.40ch04 gene_region:2435267-2437869 transcript_region:SL2.40ch04:2435267..2437869+ go_terms:GO:0003700 functional_description:"HMG transcription factor (Fragment) (AHRD V1 *--* Q676W2_HYAOR); contains Interpro domain(s) IPR000910 High mobility group, HMG1/HMG2 "; GO:0003700 NbS00017064g0026.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.6|1|1|1|5|165|306; (*GB) gi|374532843|gb|AEZ53298.1| (e_value=0.0) tetraketide alpha-pyrone reductase 1 [Nicotiana tabacum];; (*SWP) sp|Q9XES5|DFRA_MALDO (e_value=2e-64) Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1;; (*TAIR) AT4G35420.1 (e_value=5e-143) | Symbols: DRL1 | dihydroflavonol 4-reductase-like1 | chr4:16834091-16835611 REVERSE LENGTH=326;; (*ITAG) Solyc04g008780.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2420696-2423766 transcript_region:SL2.40ch04:2420696..2423766+ go_terms:GO:0004090 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 **** D7MD06_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004090 NbS00017064g0020.1 protein AED:0.23 eAED:0.23 QI:0|1|0.66|1|1|1|3|0|184; (*GB) gi|18409234|ref|NP_566942.1| (e_value=2e-45) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G51010.1 (e_value=4e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18946880-18948048 REVERSE LENGTH=188;; (*ITAG) Solyc04g008800.2.1 (e_value=3e-76) genomic_reference:SL2.40ch04 gene_region:2427020-2430714 transcript_region:SL2.40ch04:2427020..2430714+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024598g0007.1 protein AED:0.28 eAED:0.29 QI:0|0.5|0.57|1|0.5|0.42|7|443|458; (*GB) gi|350539531|ref|NP_001233919.1| (e_value=0.0) LAX1 protein [Solanum lycopersicum];; (*SWP) sp|Q9FEL7|LAX2_MEDTR (e_value=0.0) Auxin transporter-like protein 2 OS=Medicago truncatula GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G38120.1 (e_value=0.0) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485;; (*ITAG) Solyc10g076790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59070137-59074683 transcript_region:SL2.40ch10:59070137..59074683- go_terms:GO:0010328,GO:0010011 functional_description:"Auxin transporter-like protein 1 (AHRD V1 **** B6U1Y3_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0010328,GO:0010011 NbS00008410g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.66|0.28|1|0.33|0.57|7|0|355; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=0.0) transcription factor IIIA [Solanum lycopersicum];; (*SWP) sp|Q92664|TF3A_HUMAN (e_value=4e-22) Transcription factor IIIA OS=Homo sapiens GN=GTF3A PE=1 SV=3;; (*TAIR) AT1G72050.2 (e_value=4e-82) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412;; (*ITAG) Solyc10g077110.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00042521g0001.1 protein AED:0.15 eAED:0.15 QI:166|0.66|1|1|0.66|0.5|4|391|252; (*GB) gi|147766634|emb|CAN71843.1| (e_value=1e-109) hypothetical protein VITISV_036263 [Vitis vinifera];; (*SWP) sp|Q5XF11|FB248_ARATH (e_value=5e-80) F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1;; (*TAIR) AT4G35930.1 (e_value=4e-81) | Symbols: | F-box family protein | chr4:17019482-17020744 FORWARD LENGTH=321;; (*ITAG) Solyc03g033390.2.1 (e_value=6e-149) genomic_reference:SL2.40ch03 gene_region:9242801-9245006 transcript_region:SL2.40ch03:9242801..9245006+ functional_description:"F-box family protein (AHRD V1 *-*- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00042521g0010.1 protein AED:0.61 eAED:0.80 QI:0|0|0|0.33|1|1|6|0|212; (*GB) gi|255580677|ref|XP_002531161.1| (e_value=1e-110) vacuolar sorting protein, putative [Ricinus communis];; (*SWP) sp|Q7X659|VP35A_ARATH (e_value=1e-103) Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1;; (*TAIR) AT2G17790.1 (e_value=9e-105) | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733685-7739344 FORWARD LENGTH=787;; (*ITAG) Solyc03g033400.2.1 (e_value=9e-119) genomic_reference:SL2.40ch03 gene_region:9246433-9256147 transcript_region:SL2.40ch03:9246433..9256147+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00006044g0013.1 protein AED:0.00 eAED:0.06 QI:0|1|0.33|1|1|1|3|0|444; (*GB) gi|224104298|ref|XP_002313387.1| (e_value=1e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7L2|MYB98_ARATH (e_value=6e-56) Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1;; (*TAIR) AT5G58850.1 (e_value=3e-68) | Symbols: ATMYB119, MYB119 | myb domain protein 119 | chr5:23763945-23765441 FORWARD LENGTH=430;; (*ITAG) Solyc06g076840.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00006044g0012.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.25|0.75|1|1|4|0|113; (*GB) gi|12585316|sp|Q9M4G4.1|PGMC_SOLTU (e_value=6e-60) RecName: Full=Phosphoglucomutase, cytoplasmic; Short=PGM; AltName: Full=Glucose phosphomutase;; (*SWP) sp|Q9M4G4|PGMC_SOLTU (e_value=2e-61) Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1;; (*TAIR) AT1G70730.1 (e_value=8e-56) | Symbols: PGM2 | Phosphoglucomutase/phosphomannomutase family protein | chr1:26669020-26672726 REVERSE LENGTH=585;; (*ITAG) Solyc04g045340.2.1 (e_value=1e-62) genomic_reference:SL2.40ch04 gene_region:31642460-31657602 transcript_region:SL2.40ch04:31642460..31657602+ go_terms:GO:0004614 functional_description:"Phosphoglucomutase (AHRD V1 **** Q9AUQ4_ORYSA); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614 NbS00006044g0010.1 protein AED:0.22 eAED:0.22 QI:61|1|0|1|1|1|2|8|39 NbS00006044g0011.1 protein AED:0.11 eAED:0.17 QI:0|0|0|0.66|0|0|3|0|97; (*GB) gi|12585316|sp|Q9M4G4.1|PGMC_SOLTU (e_value=5e-22) RecName: Full=Phosphoglucomutase, cytoplasmic; Short=PGM; AltName: Full=Glucose phosphomutase;; (*SWP) sp|Q9M4G4|PGMC_SOLTU (e_value=1e-23) Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1;; (*TAIR) AT1G23190.1 (e_value=2e-18) | Symbols: PGM3 | Phosphoglucomutase/phosphomannomutase family protein | chr1:8219946-8224186 FORWARD LENGTH=583;; (*ITAG) Solyc04g045340.2.1 (e_value=8e-25) genomic_reference:SL2.40ch04 gene_region:31642460-31657602 transcript_region:SL2.40ch04:31642460..31657602+ go_terms:GO:0004614 functional_description:"Phosphoglucomutase (AHRD V1 **** Q9AUQ4_ORYSA); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614 NbS00042108g0003.1 protein AED:0.24 eAED:0.31 QI:0|1|0.33|1|1|1|3|0|284; (*GB) gi|297793931|ref|XP_002864850.1| (e_value=3e-134) hypothetical protein ARALYDRAFT_496538 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SMN1|GCAL2_ARATH (e_value=1e-133) Gamma carbonic anhydrase-like 2, mitochondrial OS=Arabidopsis thaliana GN=GAMMACAL2 PE=1 SV=1;; (*TAIR) AT3G48680.1 (e_value=9e-135) | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-like 2 | chr3:18035107-18036773 FORWARD LENGTH=256;; (*ITAG) Solyc03g019720.2.1 (e_value=3e-169) genomic_reference:SL2.40ch03 gene_region:6659041-6665466 transcript_region:SL2.40ch03:6659041..6665466+ go_terms:GO:0008415,GO:0004089 functional_description:"Carnitine operon protein caiE (AHRD V1 *--- D2T8N9_ERWP6); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0008415,GO:0004089 NbS00045881g0002.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.6|0.8|1|1|5|0|227; (*GB) gi|83284003|gb|ABC01909.1| (e_value=1e-117) 60S ribosomal protein L19-like protein [Solanum tuberosum];; (*SWP) sp|Q9LUQ6|RL192_ARATH (e_value=9e-111) 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1;; (*TAIR) AT3G16780.1 (e_value=7e-112) | Symbols: | Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209;; (*ITAG) Solyc09g075430.2.1 (e_value=2e-123) genomic_reference:SL2.40ch09 gene_region:62629212-62631565 transcript_region:SL2.40ch09:62629212..62631565+ go_terms:GO:0003735 functional_description:"Ribosomal protein L19 (AHRD V1 ***- Q2PYW9_SOLTU); contains Interpro domain(s) IPR000196 Ribosomal protein L19/L19e "; GO:0003735 NbS00045881g0007.1 protein AED:0.27 eAED:0.29 QI:0|0|0|0.83|1|1|6|0|451; (*GB) gi|359483750|ref|XP_002269533.2| (e_value=5e-116) PREDICTED: pentatricopeptide repeat-containing protein At4g20770-like [Vitis vinifera];; (*SWP) sp|Q9SVH0|PP329_ARATH (e_value=5e-83) Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2;; (*TAIR) AT4G20770.1 (e_value=4e-84) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11130762-11133086 REVERSE LENGTH=774;; (*ITAG) Solyc06g084580.1.1 (e_value=3e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45940907-45943204 transcript_region:SL2.40ch06:45940907..45943204- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00000352g0010.1 protein AED:0.20 eAED:0.20 QI:0|0.76|0.71|1|0.92|0.92|14|540|664; (*GB) gi|255571157|ref|XP_002526529.1| (e_value=0.0) protein transport protein sec23, putative [Ricinus communis];; (*SWP) sp|A4R1J7|SEC23_MAGO7 (e_value=0.0) Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1;; (*TAIR) AT2G21630.1 (e_value=0.0) | Symbols: | Sec23/Sec24 protein transport family protein | chr2:9250346-9253829 FORWARD LENGTH=761;; (*ITAG) Solyc01g081070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72907113-72928750 transcript_region:SL2.40ch01:72907113..72928750+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00000352g0007.1 protein AED:0.58 eAED:0.60 QI:0|0|0|0.5|1|1|2|0|188; (*GB) gi|255571157|ref|XP_002526529.1| (e_value=3e-62) protein transport protein sec23, putative [Ricinus communis];; (*SWP) sp|Q1DY01|SEC23_COCIM (e_value=9e-33) Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1;; (*TAIR) AT3G23660.1 (e_value=1e-42) | Symbols: | Sec23/Sec24 protein transport family protein | chr3:8513666-8517729 REVERSE LENGTH=765;; (*ITAG) Solyc01g081070.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:72907113-72928750 transcript_region:SL2.40ch01:72907113..72928750+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00000352g0014.1 protein AED:0.26 eAED:0.27 QI:0|0.22|0.3|0.9|0.33|0.4|10|0|655; (*GB) gi|224129392|ref|XP_002320575.1| (e_value=2e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54BN3|RFC3_DICDI (e_value=5e-29) Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1;; (*TAIR) AT5G27740.1 (e_value=2e-31) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc01g081080.1.1 (e_value=7e-172) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:72934758-72938138 transcript_region:SL2.40ch01:72934758..72938138- go_terms:GO:0005634,GO:0006260 functional_description:"Replication factor C subunit (AHRD V1 *-*- B8BYF4_THAPS); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005634,GO:0006260 NbS00000352g0011.1 protein AED:0.38 eAED:0.46 QI:44|0|0|1|0|0.5|2|0|98 NbS00000352g0012.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|100; (*GB) gi|113205274|gb|ABI34321.1| (e_value=5e-25) RNase H family protein [Solanum demissum]; NbS00000352g0013.1 protein AED:0.40 eAED:0.41 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-23) RNase H family protein [Solanum demissum]; NbS00021172g0008.1 protein AED:0.09 eAED:0.09 QI:192|1|0.5|1|0|0|2|0|83 NbS00021172g0007.1 protein AED:0.19 eAED:0.20 QI:15|1|0.85|1|1|1|7|0|438; (*GB) gi|297740263|emb|CBI30445.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-92) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G37980.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638;; (*ITAG) Solyc09g011860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5131897-5135504 transcript_region:SL2.40ch09:5131897..5135504- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00021172g0010.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.66|0.5|0.33|3|0|352; (*GB) gi|298569786|gb|ADI87421.1| (e_value=3e-153) fructokinase-like protein 1 [Nicotiana tabacum];; (*SWP) sp|Q0J8G4|SCRK2_ORYSJ (e_value=8e-21) Fructokinase-2 OS=Oryza sativa subsp. japonica GN=FRK2 PE=1 SV=1;; (*TAIR) AT3G54090.1 (e_value=2e-135) | Symbols: FLN1 | fructokinase-like 1 | chr3:20028145-20029835 FORWARD LENGTH=471;; (*ITAG) Solyc09g011850.2.1 (e_value=6e-150) genomic_reference:SL2.40ch09 gene_region:5125301-5128168 transcript_region:SL2.40ch09:5125301..5128168+ functional_description:"Fructokinase-like protein 1 (AHRD V1 ***- D9IWP2_SOLTU); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00021172g0009.1 protein AED:0.29 eAED:0.47 QI:0|0|0|1|0|0|3|0|107 NbS00032221g0006.1 protein AED:0.43 eAED:0.43 QI:74|0.5|0.66|1|1|1|3|282|390; (*GB) gi|225424360|ref|XP_002284896.1| (e_value=6e-133) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Vitis vinifera];; (*SWP) sp|Q8H1S4|ACCH3_ARATH (e_value=2e-71) 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1;; (*TAIR) AT2G30830.1 (e_value=5e-73) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr2:13132707-13134284 REVERSE LENGTH=358;; (*ITAG) Solyc04g007980.2.1 (e_value=1e-180) genomic_reference:SL2.40ch04 gene_region:1636283-1640787 transcript_region:SL2.40ch04:1636283..1640787+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B6SUN2_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00006056g0001.1 protein AED:0.17 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|190; (*GB) gi|24745601|dbj|BAC23030.1| (e_value=6e-76) ring H2 zinc finger [Solanum tuberosum];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=5e-14) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=4e-15) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=6e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00006056g0003.1 protein AED:0.22 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|490; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-95) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=1e-69) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=2e-59) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc10g008240.2.1 (e_value=3e-115) genomic_reference:SL2.40ch10 gene_region:2346611-2349504 transcript_region:SL2.40ch10:2346611..2349504+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006056g0004.1 protein AED:0.43 eAED:0.45 QI:0|0|0|1|1|1|2|0|118; (*ITAG) Solyc10g008240.2.1 (e_value=5e-11) genomic_reference:SL2.40ch10 gene_region:2346611-2349504 transcript_region:SL2.40ch10:2346611..2349504+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006056g0008.1 protein AED:0.12 eAED:0.12 QI:24|0.83|0.84|1|0.41|0.46|13|435|413; (*GB) gi|238886097|gb|ACR77530.1| (e_value=0.0) adenylyl cyclase [Nicotiana benthamiana];; (*TAIR) AT3G21465.1 (e_value=2e-132) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7560750-7563202 FORWARD LENGTH=388;; (*ITAG) Solyc07g041930.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00007820g0006.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0|1|0.66|0.5|4|0|303; (*GB) gi|77552099|gb|ABA94896.1| (e_value=4e-15) Helix-loop-helix DNA-binding domain containing protein [Oryza sativa Japonica Group];; (*SWP) sp|Q7XHI9|BH084_ARATH (e_value=5e-15) Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2 SV=1;; (*TAIR) AT2G14760.1 (e_value=4e-16) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:6321840-6323312 REVERSE LENGTH=328;; (*ITAG) Solyc12g088380.1.1 (e_value=2e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62234887-62236626 transcript_region:SL2.40ch12:62234887..62236626+ functional_description:"Helix-loop-helix DNA-binding domain containing protein (AHRD V1 *--- Q2QMV9_ORYSJ)"; NbS00025281g0006.1 protein AED:0.12 eAED:0.15 QI:4|1|0.6|1|1|0.8|5|0|581; (*GB) gi|255539777|ref|XP_002510953.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3UM29|COG7_MOUSE (e_value=1e-19) Conserved oligomeric Golgi complex subunit 7 OS=Mus musculus GN=Cog7 PE=2 SV=1;; (*TAIR) AT5G51430.1 (e_value=0.0) | Symbols: EYE | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:20887044-20890795 REVERSE LENGTH=836;; (*ITAG) Solyc05g006950.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1542784-1548453 transcript_region:SL2.40ch05:1542784..1548453+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 7 (AHRD V1 ***- COG7_MOUSE); contains Interpro domain(s) IPR019335 Conserved oligomeric Golgi complex, subunit 7 "; GO:0005515 NbS00016191g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|93280156|gb|ABF06706.1| (e_value=3e-43) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=4e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00016191g0004.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.5|1|1|2|0|65 NbS00016191g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.83|1|0.8|0.83|6|396|234; (*GB) gi|356516192|ref|XP_003526780.1| (e_value=1e-118) PREDICTED: uncharacterized protein LOC100813121 [Glycine max];; (*TAIR) AT5G24650.1 (e_value=1e-89) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:8437123-8438859 FORWARD LENGTH=259;; (*ITAG) Solyc03g079940.2.1 (e_value=8e-149) genomic_reference:SL2.40ch03 gene_region:45400646-45404642 transcript_region:SL2.40ch03:45400646..45404642- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase (AHRD V1 **-- C1FD57_9CHLO); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0015450 NbS00001480g0111.1 protein AED:0.13 eAED:0.13 QI:334|0.8|0.5|1|0.6|0.5|6|0|652 NbS00001480g0115.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|0.66|0.75|4|338|456 NbS00001480g0112.1 protein AED:0.24 eAED:0.24 QI:46|0.5|0.4|0.6|0.5|0.6|5|0|123 NbS00004978g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.57|1|1|1|7|0|422; (*GB) gi|225461508|ref|XP_002285119.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264152 isoform 1 [Vitis vinifera];; (*TAIR) AT5G53900.2 (e_value=1e-126) | Symbols: | Serine/threonine-protein kinase WNK (With No Lysine)-related | chr5:21881375-21883133 REVERSE LENGTH=377;; (*ITAG) Solyc07g062950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:62809477-62812512 transcript_region:SL2.40ch07:62809477..62812512+ functional_description:"BHLH transcription factor (AHRD V1 *-*- Q9XIN0_ARATH)"; NbS00042418g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.75|1|0.66|0.75|4|178|501; (*GB) gi|383212268|dbj|BAM09004.1| (e_value=0.0) cytokinin oxidase/dehydrogenase-like [Solanum lycopersicum];; (*SWP) sp|Q9FUJ1|CKX7_ARATH (e_value=0.0) Cytokinin dehydrogenase 7 OS=Arabidopsis thaliana GN=CKX7 PE=1 SV=1;; (*TAIR) AT5G21482.1 (e_value=0.0) | Symbols: CKX7, ATCKX5 | cytokinin oxidase 7 | chr5:7226842-7230052 FORWARD LENGTH=524;; (*ITAG) Solyc08g061930.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47205921-47209565 transcript_region:SL2.40ch08:47205921..47209565+ go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase (AHRD V1 **** C3VPM8_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00042418g0007.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|0|0|3|0|121; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-15) hypothetical protein [Nicotiana tabacum]; NbS00013843g0008.1 protein AED:0.06 eAED:0.06 QI:199|0.83|0.71|1|0.33|0.57|7|796|320; (*GB) gi|225470902|ref|XP_002263478.1| (e_value=6e-154) PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 [Vitis vinifera];; (*SWP) sp|Q94EI9|PT314_ARATH (e_value=1e-143) Probable sugar phosphate/phosphate translocator At3g14410 OS=Arabidopsis thaliana GN=At3g14410 PE=2 SV=1;; (*TAIR) AT3G14410.1 (e_value=1e-144) | Symbols: | Nucleotide/sugar transporter family protein | chr3:4815982-4817852 REVERSE LENGTH=340;; (*ITAG) Solyc07g056530.2.1 (e_value=1e-179) genomic_reference:SL2.40ch07 gene_region:61646873-61651507 transcript_region:SL2.40ch07:61646873..61651507- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00013843g0007.1 protein AED:0.26 eAED:0.27 QI:0|0.44|0.4|0.9|0.66|0.8|10|479|738; (*GB) gi|225462100|ref|XP_002271760.1| (e_value=5e-164) PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Vitis vinifera];; (*SWP) sp|Q9FPS2|UBP25_ARATH (e_value=1e-146) Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1;; (*TAIR) AT3G14400.1 (e_value=7e-148) | Symbols: UBP25 | ubiquitin-specific protease 25 | chr3:4811953-4815210 REVERSE LENGTH=661;; (*ITAG) Solyc07g056520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61634585-61644861 transcript_region:SL2.40ch07:61634585..61644861- go_terms:GO:0004843,GO:0005515 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SU52_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0005515 NbS00031648g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|172; (*GB) gi|357455541|ref|XP_003598051.1| (e_value=2e-105) hypothetical protein MTR_3g005710 [Medicago truncatula];; (*TAIR) AT1G33800.1 (e_value=9e-90) | Symbols: | Protein of unknown function (DUF579) | chr1:12261480-12262456 FORWARD LENGTH=297;; (*ITAG) Solyc11g031950.1.1 (e_value=1e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:20684866-20685750 transcript_region:SL2.40ch11:20684866..20685750- functional_description:"Expressed protein (Fragment) (AHRD V1 *-*- B3VV22_POPTN); contains Interpro domain(s) IPR006514 Protein of unknown function DUF579, plant "; NbS00031648g0011.1 protein AED:0.23 eAED:0.23 QI:280|1|1|1|0.95|0.91|23|300|916; (*GB) gi|225465253|ref|XP_002268311.1| (e_value=0.0) PREDICTED: dynamin-2B [Vitis vinifera];; (*SWP) sp|Q9LQ55|DRP2B_ARATH (e_value=0.0) Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2;; (*TAIR) AT1G59610.1 (e_value=0.0) | Symbols: ADL3, CF1, DRP2B, DL3 | dynamin-like 3 | chr1:21893413-21900780 FORWARD LENGTH=920;; (*ITAG) Solyc11g039650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:25081015-25107234 transcript_region:SL2.40ch11:25081015..25107234+ go_terms:GO:0005525 functional_description:"Dynamin-2A (AHRD V1 ***- B6UEQ3_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00046579g0001.1 protein AED:0.33 eAED:0.33 QI:0|1|0.5|1|1|1|2|651|410; (*GB) gi|297745322|emb|CBI40402.3| (e_value=2e-109) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUH2|Y1015_ARATH (e_value=9e-91) Uncharacterized protein At1g01500 OS=Arabidopsis thaliana GN=At1g01500 PE=2 SV=1;; (*TAIR) AT1G01500.1 (e_value=6e-92) | Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:185260-186573 FORWARD LENGTH=327;; (*ITAG) Solyc10g011980.2.1 (e_value=8e-133) genomic_reference:SL2.40ch10 gene_region:4272369-4276978 transcript_region:SL2.40ch10:4272369..4276978+ functional_description:"2-hydroxyacid dehydrongenase (Fragment) (AHRD V1 *-*- C6F725_PSEMZ)"; NbS00057050g0003.1 protein AED:0.30 eAED:0.27 QI:0|0.88|0.83|1|1|1|18|0|575; (*GB) gi|224072427|ref|XP_002303728.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=0.0) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT1G30820.1 (e_value=0.0) | Symbols: | CTP synthase family protein | chr1:10945251-10948825 REVERSE LENGTH=600;; (*ITAG) Solyc02g082190.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40468742-40474353 transcript_region:SL2.40ch02:40468742..40474353+ go_terms:GO:0003883,GO:0042802 functional_description:"CTP synthase (AHRD V1 **** B6U7R1_MAIZE); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0003883,GO:0042802 NbS00011665g0015.1 protein AED:0.07 eAED:0.11 QI:44|0.5|0.33|1|0|0|3|0|357; (*GB) gi|296085491|emb|CBI29223.3| (e_value=1e-137) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G45275.1 (e_value=3e-109) | Symbols: | Major facilitator superfamily protein | chr5:18334476-18337240 REVERSE LENGTH=570;; (*ITAG) Solyc08g074960.2.1 (e_value=7e-133) genomic_reference:SL2.40ch08 gene_region:56264924-56268960 transcript_region:SL2.40ch08:56264924..56268960+ functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00011665g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|306920205|emb|CBX19979.1| (e_value=1e-87) ornithine decarboxylase [Nicotiana glauca];; (*SWP) sp|P50134|DCOR_DATST (e_value=1e-84) Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1;; (*ITAG) Solyc04g082030.1.1 (e_value=2e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63427822-63429117 transcript_region:SL2.40ch04:63427822..63429117- go_terms:GO:0004586 functional_description:"Ornithine decarboxylase (AHRD V1 **** Q9SXF3_TOBAC); contains Interpro domain(s) IPR002433 Ornithine decarboxylase "; GO:0004586 NbS00011665g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|479; (*GB) gi|224071477|ref|XP_002303479.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT4G19460.1 (e_value=0.0) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr4:10610422-10611972 REVERSE LENGTH=516;; (*ITAG) Solyc08g074970.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:56269563-56271008 transcript_region:SL2.40ch08:56269563..56271008- go_terms:GO:0016757 functional_description:"Glycosyl transferase group 1 (AHRD V1 **** A9B8A9_HERA2); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0016757 NbS00011665g0016.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|1|0.8|5|0|419; (*GB) gi|255557737|ref|XP_002519898.1| (e_value=0.0) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=6e-150) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT1G61590.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:22723691-22726022 REVERSE LENGTH=424;; (*ITAG) Solyc08g074980.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56273456-56276440 transcript_region:SL2.40ch08:56273456..56276440- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009902g0109.1 protein AED:0.16 eAED:0.16 QI:0|0.9|0.85|1|0.75|0.76|21|205|1186 NbS00020874g0013.1 protein AED:0.16 eAED:0.17 QI:23|1|0.87|1|1|1|8|0|1268; (*GB) gi|359481863|ref|XP_003632681.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257222 [Vitis vinifera];; (*TAIR) AT3G58050.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). | chr3:21492539-21497018 FORWARD LENGTH=1209;; (*ITAG) Solyc10g079010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59981121-59989416 transcript_region:SL2.40ch10:59981121..59989416+ go_terms:GO:0006265 functional_description:"Unknown Protein (AHRD V1)"; GO:0006265 NbS00020874g0011.1 protein AED:0.52 eAED:0.61 QI:0|0|0|1|0|0.5|2|0|128; (*ITAG) Solyc10g079010.1.1 (e_value=2e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59981121-59989416 transcript_region:SL2.40ch10:59981121..59989416+ go_terms:GO:0006265 functional_description:"Unknown Protein (AHRD V1)"; GO:0006265 NbS00020874g0012.1 protein AED:0.14 eAED:0.14 QI:0|0|0.5|1|0|0.5|2|0|267; (*GB) gi|225441506|ref|XP_002280431.1| (e_value=3e-92) PREDICTED: uncharacterized protein LOC100267633 [Vitis vinifera];; (*TAIR) AT2G41950.1 (e_value=4e-78) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17513137-17514029 FORWARD LENGTH=266;; (*ITAG) Solyc03g053020.2.1 (e_value=2e-143) genomic_reference:SL2.40ch03 gene_region:19653250-19654305 transcript_region:SL2.40ch03:19653250..19654305+ functional_description:"Methyltransferase type 11 (AHRD V1 *-*- A0LP87_SYNFM)"; NbS00020139g0005.1 protein AED:0.02 eAED:0.02 QI:126|1|1|1|1|1|5|127|434; (*GB) gi|255540545|ref|XP_002511337.1| (e_value=0.0) histone deacetylase 1, 2 ,3, putative [Ricinus communis];; (*SWP) sp|Q9FML2|HDA6_ARATH (e_value=0.0) Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1;; (*TAIR) AT5G63110.1 (e_value=0.0) | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315834-25318227 REVERSE LENGTH=471;; (*ITAG) Solyc06g071680.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00011693g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|187; (*GB) gi|255554172|ref|XP_002518126.1| (e_value=6e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G04770.1 (e_value=2e-61) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1336564-1337767 REVERSE LENGTH=303;; (*ITAG) Solyc09g091600.2.1 (e_value=2e-100) genomic_reference:SL2.40ch09 gene_region:66193989-66196501 transcript_region:SL2.40ch09:66193989..66196501+ go_terms:GO:0005488 functional_description:"Male sterility MS5 family protein (AHRD V1 **-- D7KE75_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00016959g0009.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.33|0.66|0.5|0.33|3|65|359; (*GB) gi|147866117|emb|CAN78823.1| (e_value=2e-21) hypothetical protein VITISV_006555 [Vitis vinifera]; NbS00016959g0008.1 protein AED:0.14 eAED:0.14 QI:149|0.87|0.77|1|0.62|0.55|9|359|475; (*GB) gi|225434688|ref|XP_002279865.1| (e_value=0.0) PREDICTED: probable anion transporter 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q66GI9|ANTR4_ARATH (e_value=0.0) Probable anion transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ANTR4 PE=2 SV=1;; (*TAIR) AT3G46980.1 (e_value=0.0) | Symbols: PHT4;3 | phosphate transporter 4;3 | chr3:17307294-17309899 REVERSE LENGTH=533;; (*ITAG) Solyc09g031700.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:23556457-23568316 transcript_region:SL2.40ch09:23556457..23568316- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B6VRT1_LYMST); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00016959g0108.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|440 NbS00016959g0109.1 protein AED:0.23 eAED:0.23 QI:338|0.75|0.6|1|1|0.8|5|418|266 NbS00016959g0107.1 protein AED:0.45 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|89 NbS00010569g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|317; (*GB) gi|27151627|sp|Q9XGI7.1|NAS_SOLLC (e_value=0.0) RecName: Full=Nicotianamine synthase; AltName: Full=Chloronerva; AltName: Full=S-adenosyl-L-methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3-carboxypropyltransferase;; (*SWP) sp|Q9XGI7|NAS_SOLLC (e_value=0.0) Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1;; (*TAIR) AT1G09240.1 (e_value=2e-137) | Symbols: NAS3, ATNAS3 | nicotianamine synthase 3 | chr1:2984950-2985912 FORWARD LENGTH=320;; (*ITAG) Solyc01g100490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82262052-82263287 transcript_region:SL2.40ch01:82262052..82263287+ go_terms:GO:0030418 functional_description:"Nicotianamine synthase (AHRD V1 ***- A3DUI9_MALXI); contains Interpro domain(s) IPR004298 Nicotianamine synthase "; GO:0030418 NbS00010569g0008.1 protein AED:0.05 eAED:0.05 QI:0|0.75|0.6|1|0.75|0.8|5|0|330; (*GB) gi|4589449|dbj|BAA76750.1| (e_value=0.0) KN1-type homeobox protein [Nicotiana tabacum];; (*SWP) sp|Q9FP29|KNOS1_ORYSJ (e_value=1e-94) Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1;; (*TAIR) AT1G70510.1 (e_value=7e-75) | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis thaliana 2 | chr1:26576635-26582145 FORWARD LENGTH=310;; (*ITAG) Solyc01g100510.2.1 (e_value=8e-147) genomic_reference:SL2.40ch01 gene_region:82275127-82279577 transcript_region:SL2.40ch01:82275127..82279577- go_terms:GO:0005515 functional_description:"Knotted-like homeobox protein (AHRD V1 ***- Q49RB7_POPTO); contains Interpro domain(s) IPR001356 Homeobox IPR005539 ELK IPR017970 Homeobox, conserved site "; GO:0005515 NbS00010569g0009.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|2|0|430; (*GB) gi|356512433|ref|XP_003524923.1| (e_value=5e-157) PREDICTED: microfibrillar-associated protein 1-like [Glycine max];; (*SWP) sp|Q9CQU1|MFAP1_MOUSE (e_value=2e-41) Microfibrillar-associated protein 1 OS=Mus musculus GN=Mfap1 PE=1 SV=1;; (*TAIR) AT5G17900.1 (e_value=1e-140) | Symbols: | microfibrillar-associated protein-related | chr5:5925144-5926690 FORWARD LENGTH=435;; (*ITAG) Solyc01g100500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82265025-82268871 transcript_region:SL2.40ch01:82265025..82268871- go_terms:GO:0005576 functional_description:"Microfibrillar-associated protein 1 (AHRD V1 *-*- C1BVS1_9MAXI); contains Interpro domain(s) IPR009730 Micro-fibrillar-associated 1, C-terminal "; GO:0005576 NbS00010569g0114.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0.5|2|0|125 NbS00010569g0102.1 protein AED:0.30 eAED:0.31 QI:239|1|0.88|1|1|1|9|0|297 NbS00003418g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|388490688|gb|AFK33410.1| (e_value=2e-82) unknown [Lotus japonicus];; (*SWP) sp|Q42540|UBC7_ARATH (e_value=3e-82) Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1;; (*TAIR) AT5G59300.1 (e_value=6e-83) | Symbols: UBC7, ATUBC7 | ubiquitin carrier protein 7 | chr5:23919868-23921304 REVERSE LENGTH=203;; (*ITAG) Solyc09g009720.1.1 (e_value=4e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3123571-3124074 transcript_region:SL2.40ch09:3123571..3124074+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme 13 E2 (AHRD V1 **** D8QMV8_SELML); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbS00008403g0003.1 protein AED:0.40 eAED:0.40 QI:0|0.6|0.66|0.83|1|1|6|0|139; (*GB) gi|25373339|pir||C96792 (e_value=1e-62) unknown protein F14G6.5 [imported] - Arabidopsis thaliana;; (*SWP) sp|Q9S720|PPD3_ARATH (e_value=5e-58) PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis thaliana GN=PPD3 PE=1 SV=2;; (*TAIR) AT1G76450.1 (e_value=4e-59) | Symbols: | Photosystem II reaction center PsbP family protein | chr1:28684618-28686109 FORWARD LENGTH=247;; (*ITAG) Solyc12g094720.1.1 (e_value=1e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63196567-63200218 transcript_region:SL2.40ch12:63196567..63200218+ functional_description:"PsbP domain-containing protein 3, chloroplastic (AHRD V1 ***- PPD3_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; NbS00008403g0008.1 protein AED:0.17 eAED:0.17 QI:150|1|1|1|1|1|19|326|616; (*GB) gi|225457674|ref|XP_002276269.1| (e_value=0.0) PREDICTED: pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha-like [Vitis vinifera];; (*SWP) sp|P21342|PFPA_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G76550.1 (e_value=0.0) | Symbols: | Phosphofructokinase family protein | chr1:28722900-28726929 REVERSE LENGTH=617;; (*ITAG) Solyc12g095760.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63231944-63238575 transcript_region:SL2.40ch12:63231944..63238575- go_terms:GO:0005576,GO:0005945 functional_description:"Diphosphate--fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- C8PT93_9SPIO); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005576,GO:0005945 NbS00007558g0008.1 protein AED:0.00 eAED:0.00 QI:38|1|1|1|1|1|2|85|389; (*GB) gi|350537407|ref|NP_001234036.1| (e_value=0.0) chalcone synthase 2 [Solanum lycopersicum];; (*SWP) sp|P23419|CHS2_SOLLC (e_value=0.0) Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2;; (*TAIR) AT5G13930.1 (e_value=0.0) | Symbols: CHS, TT4, ATCHS | Chalcone and stilbene synthase family protein | chr5:4488762-4490035 FORWARD LENGTH=395;; (*ITAG) Solyc05g053550.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62779402-62781543 transcript_region:SL2.40ch05:62779402..62781543+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- C5IWS6_NICAL); contains Interpro domain(s) IPR011141 Polyketide synthase, type III "; GO:0008415,GO:0008152,GO:0009058 NbS00007558g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|505; (*GB) gi|225433416|ref|XP_002283185.1| (e_value=0.0) PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LRM7|NCED6_ARATH (e_value=0.0) 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1;; (*TAIR) AT3G24220.1 (e_value=0.0) | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid dioxygenase 6 | chr3:8761439-8763172 FORWARD LENGTH=577;; (*ITAG) Solyc05g053530.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62757011-62758762 transcript_region:SL2.40ch05:62757011..62758762- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase 6"; GO:0045549 NbS00007558g0006.1 protein AED:0.49 eAED:0.76 QI:0|0|0|1|1|1|2|0|76 NbS00046377g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.66|1|1|1|3|182|235; (*GB) gi|224136199|ref|XP_002326803.1| (e_value=1e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5PP62|SPX3_ARATH (e_value=1e-83) SPX domain-containing protein 3 OS=Arabidopsis thaliana GN=SPX3 PE=2 SV=1;; (*TAIR) AT2G45130.1 (e_value=7e-85) | Symbols: ATSPX3, SPX3 | SPX domain gene 3 | chr2:18606489-18607754 FORWARD LENGTH=245;; (*ITAG) Solyc01g090890.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:76355582-76358021 transcript_region:SL2.40ch01:76355582..76358021+ functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00046377g0002.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|296089209|emb|CBI38912.3| (e_value=4e-120) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G60590.3 (e_value=3e-98) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:22398228-22399753 FORWARD LENGTH=404;; (*ITAG) Solyc01g090900.2.1 (e_value=5e-176) genomic_reference:SL2.40ch01 gene_region:76374975-76376193 transcript_region:SL2.40ch01:76374975..76376193+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024998g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.66|1|1|1|3|0|413; (*GB) gi|260177092|gb|ACX33889.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=0.0) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc09g064160.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:56854505-56856027 transcript_region:SL2.40ch09:56854505..56856027- go_terms:GO:0004499 functional_description:"Flavin monooxygenase-like protein (AHRD V1 **** D2IGV4_SOLLC); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004499 NbS00039971g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|665; (*GB) gi|225456309|ref|XP_002279988.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100268151 [Vitis vinifera];; (*SWP) sp|O54922|EXOC7_RAT (e_value=5e-23) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G50380.1 (e_value=0.0) | Symbols: ATEXO70F1, EXO70F1 | exocyst subunit exo70 family protein F1 | chr5:20516382-20518433 REVERSE LENGTH=683;; (*ITAG) Solyc03g111320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55986032-55988029 transcript_region:SL2.40ch03:55986032..55988029+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00016675g0014.1 protein AED:0.24 eAED:0.24 QI:140|1|1|1|0.75|0.6|5|214|405; (*GB) gi|255570622|ref|XP_002526267.1| (e_value=7e-157) catalytic, putative [Ricinus communis];; (*TAIR) AT1G74300.1 (e_value=5e-143) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:27935368-27936474 FORWARD LENGTH=346;; (*ITAG) Solyc11g007030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1516044-1521058 transcript_region:SL2.40ch11:1516044..1521058- functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00016675g0012.1 protein AED:0.58 eAED:0.59 QI:0|0|0|0.25|0.66|0.5|4|0|153; (*ITAG) Solyc09g064150.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56827522-56828104 transcript_region:SL2.40ch09:56827522..56828104- go_terms:GO:0003677 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 ***- Q2R194_ORYSJ); contains Interpro domain(s) IPR003656 Zinc finger, BED-type predicted "; GO:0003677 NbS00016675g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0.4|1|1|1|5|0|184; (*GB) gi|313507398|gb|ADR65113.1| (e_value=3e-85) mevalonate 5-diphosphate decarboxylase [Catharanthus roseus];; (*SWP) sp|Q5U403|MVD1_DANRE (e_value=1e-32) Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1;; (*TAIR) AT2G38700.1 (e_value=8e-79) | Symbols: MVD1, ATMVD1 | mevalonate diphosphate decarboxylase 1 | chr2:16180918-16183785 REVERSE LENGTH=412;; (*ITAG) Solyc11g007020.1.1 (e_value=4e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1510020-1515652 transcript_region:SL2.40ch11:1510020..1515652+ go_terms:GO:0016310,GO:0008299 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 ***- Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0016310,GO:0008299 NbS00018660g0011.1 protein AED:0.00 eAED:0.08 QI:150|1|0.5|1|1|1|2|0|273; (*GB) gi|356547153|ref|XP_003541981.1| (e_value=9e-55) PREDICTED: uncharacterized protein LOC100806513 [Glycine max];; (*TAIR) AT5G22930.1 (e_value=9e-43) | Symbols: | Protein of unknown function (DUF1635) | chr5:7668229-7669315 REVERSE LENGTH=238;; (*ITAG) Solyc11g066360.1.1 (e_value=6e-85) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:49204723-49205974 transcript_region:SL2.40ch11:49204723..49205974+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00018660g0016.1 protein AED:0.24 eAED:0.25 QI:0|1|0.8|1|1|1|5|0|518; (*GB) gi|225436460|ref|XP_002274821.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100253409 [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=1e-163) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc11g066380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49235503-49238383 transcript_region:SL2.40ch11:49235503..49238383+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00018660g0018.1 protein AED:0.05 eAED:0.05 QI:73|0.83|0.57|1|1|1|7|0|489; (*GB) gi|225436462|ref|XP_002272683.1| (e_value=0.0) PREDICTED: DNA ligase 1 [Vitis vinifera];; (*SWP) sp|Q42572|DNLI1_ARATH (e_value=7e-176) DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2;; (*TAIR) AT1G08130.1 (e_value=5e-177) | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790;; (*ITAG) Solyc11g066370.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49208756-49221834 transcript_region:SL2.40ch11:49208756..49221834- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00018660g0017.1 protein AED:0.08 eAED:0.08 QI:22|0.85|0.5|0.87|0.85|0.87|8|377|189; (*GB) gi|356542672|ref|XP_003539790.1| (e_value=2e-104) PREDICTED: DNA ligase 1-like [Glycine max];; (*SWP) sp|Q42572|DNLI1_ARATH (e_value=3e-102) DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2;; (*TAIR) AT1G08130.1 (e_value=2e-103) | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790;; (*ITAG) Solyc11g066370.1.1 (e_value=1e-113) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49208756-49221834 transcript_region:SL2.40ch11:49208756..49221834- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00033938g0008.1 protein AED:0.00 eAED:0.00 QI:57|1|1|1|1|1|2|64|183; (*GB) gi|225445555|ref|XP_002282262.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100268054 [Vitis vinifera];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=8e-22) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT2G25060.1 (e_value=4e-21) | Symbols: ENODL14, AtENODL14 | early nodulin-like protein 14 | chr2:10662308-10662930 FORWARD LENGTH=182;; (*ITAG) Solyc07g008130.2.1 (e_value=8e-72) genomic_reference:SL2.40ch07 gene_region:2838443-2840766 transcript_region:SL2.40ch07:2838443..2840766- go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00033938g0007.1 protein AED:0.22 eAED:0.22 QI:0|1|0.33|1|1|1|3|176|343; (*GB) gi|350535054|ref|NP_001234429.1| (e_value=9e-124) dicyanin precursor [Solanum lycopersicum];; (*SWP) sp|P42849|UMEC_ARMRU (e_value=4e-28) Umecyanin OS=Armoracia rusticana PE=1 SV=1;; (*TAIR) AT5G20230.1 (e_value=6e-28) | Symbols: ATBCB, BCB, SAG14 | blue-copper-binding protein | chr5:6826626-6827408 FORWARD LENGTH=196;; (*ITAG) Solyc07g008120.2.1 (e_value=2e-64) genomic_reference:SL2.40ch07 gene_region:2836185-2837343 transcript_region:SL2.40ch07:2836185..2837343+ go_terms:GO:0009055 functional_description:"Blue copper protein (Fragment) (AHRD V1 *--- O82576_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00055605g0004.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.25|1|0.33|0.5|4|0|156; (*GB) gi|262263161|dbj|BAI48083.1| (e_value=1e-81) MIS12 homologue [Nicotiana tabacum];; (*TAIR) AT5G35520.1 (e_value=1e-13) | Symbols: MIS12, ATMIS12 | minichromosome instability 12 (mis12)-like | chr5:13701396-13702925 FORWARD LENGTH=238;; (*ITAG) Solyc03g114520.2.1 (e_value=1e-60) genomic_reference:SL2.40ch03 gene_region:58550618-58554062 transcript_region:SL2.40ch03:58550618..58554062+ go_terms:GO:0005634 functional_description:"Kinetochore protein (AHRD V1 ***- D0FYH3_NICTO); contains Interpro domain(s) IPR008685 Centromere protein Mis12 "; GO:0005634 NbS00031862g0001.1 protein AED:0.67 eAED:0.67 QI:0|0|0|0.6|1|1|5|0|144 NbS00002125g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|47971184|dbj|BAD22534.1| (e_value=7e-143) harpin inducing protein 1-like 18 [Nicotiana tabacum];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=3e-30) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT2G35980.1 (e_value=2e-59) | Symbols: YLS9, NHL10, ATNHL10 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:15110635-15111318 FORWARD LENGTH=227;; (*ITAG) Solyc10g081980.1.1 (e_value=2e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62218431-62223520 transcript_region:SL2.40ch10:62218431..62223520+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00002125g0013.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.66|0.5|0.33|3|0|269; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-60) hypothetical protein [Nicotiana tabacum]; NbS00002125g0008.1 protein AED:0.34 eAED:0.47 QI:0|0|0|1|1|1|2|0|118; (*GB) gi|47971184|dbj|BAD22534.1| (e_value=6e-62) harpin inducing protein 1-like 18 [Nicotiana tabacum];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=1e-19) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT2G35980.1 (e_value=3e-31) | Symbols: YLS9, NHL10, ATNHL10 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:15110635-15111318 FORWARD LENGTH=227;; (*ITAG) Solyc10g081980.1.1 (e_value=2e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62218431-62223520 transcript_region:SL2.40ch10:62218431..62223520+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00050214g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|302398943|gb|ADL36766.1| (e_value=1e-18) MYB domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=2e-15) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT3G55730.1 (e_value=7e-19) | Symbols: MYB109, AtMYB109 | myb domain protein 109 | chr3:20682114-20683963 REVERSE LENGTH=399;; (*ITAG) Solyc09g011780.2.1 (e_value=6e-31) genomic_reference:SL2.40ch09 gene_region:5070696-5075388 transcript_region:SL2.40ch09:5070696..5075388- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R080_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00005986g0012.1 protein AED:0.16 eAED:0.16 QI:69|0.9|0.76|1|0.45|0.57|21|477|807; (*GB) gi|297735464|emb|CBI17904.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54GS1|CL16A_DICDI (e_value=9e-47) Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943 PE=3 SV=1;; (*TAIR) AT3G28430.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:10657441-10662404 REVERSE LENGTH=837;; (*ITAG) Solyc07g018100.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:9172636-9186689 transcript_region:SL2.40ch07:9172636..9186689- functional_description:"GOP-1 (Fragment) (AHRD V1 *--- Q95UF8_CAEEL); contains Interpro domain(s) IPR019155 Protein of unknown function FPL "; NbS00058442g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|798; (*GB) gi|225444173|ref|XP_002268853.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like [Vitis vinifera];; (*SWP) sp|Q9STE1|PP333_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1;; (*TAIR) AT4G21300.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11336479-11339052 FORWARD LENGTH=857;; (*ITAG) Solyc02g069500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33958158-33960719 transcript_region:SL2.40ch02:33958158..33960719+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEV2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00020125g0006.1 protein AED:0.72 eAED:0.76 QI:0|0.11|0|0.5|0.88|0.8|10|0|301; (*GB) gi|356534864|ref|XP_003535971.1| (e_value=9e-106) PREDICTED: uncharacterized protein all1601-like [Glycine max];; (*SWP) sp|Q7XTG7|HCAR_ORYSJ (e_value=1e-104) 7-hydroxymethyl chlorophyll a reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=HCAR PE=3 SV=2;; (*TAIR) AT1G04620.1 (e_value=1e-100) | Symbols: | coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family | chr1:1282869-1286492 REVERSE LENGTH=462;; (*ITAG) Solyc09g091100.2.1 (e_value=3e-114) genomic_reference:SL2.40ch09 gene_region:65800960-65811144 transcript_region:SL2.40ch09:65800960..65811144- go_terms:GO:0050454 functional_description:"Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like (AHRD V1 **** Q118A1_TRIEI); contains Interpro domain(s) IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal "; GO:0050454 NbS00020125g0009.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|454; (*GB) gi|260177088|gb|ACX33887.1| (e_value=0.0) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|O23024|YUC3_ARATH (e_value=0.0) Flavin-containing monooxygenase YUCCA3 OS=Arabidopsis thaliana GN=YUC3 PE=2 SV=1;; (*TAIR) AT1G04610.1 (e_value=0.0) | Symbols: YUC3 | YUCCA 3 | chr1:1279524-1281331 FORWARD LENGTH=437;; (*ITAG) Solyc09g091090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65795418-65797460 transcript_region:SL2.40ch09:65795418..65797460+ go_terms:GO:0004497 functional_description:"Monooxygenase (AHRD V1 **** D5ZV09_9ACTO); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004497 NbS00035211g0001.1 protein AED:0.08 eAED:0.08 QI:175|0.87|0.66|1|0.75|0.55|9|510|667; (*GB) gi|225458964|ref|XP_002283591.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Vitis vinifera];; (*TAIR) AT1G51580.1 (e_value=3e-57) | Symbols: | RNA-binding KH domain-containing protein | chr1:19125612-19128102 FORWARD LENGTH=621;; (*ITAG) Solyc04g077060.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:59615562-59620233 transcript_region:SL2.40ch04:59615562..59620233- go_terms:GO:0003676 functional_description:"KH domain-containing protein (AHRD V1 **-- D7KHT7_ARALY); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00035211g0002.1 protein AED:0.01 eAED:0.13 QI:2117|1|0.66|1|0.5|0.33|3|0|200; (*GB) gi|24370975|emb|CAA70968.2| (e_value=3e-117) amino acid transporter [Solanum tuberosum];; (*SWP) sp|P92934|AAP6_ARATH (e_value=5e-114) Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1;; (*TAIR) AT5G49630.1 (e_value=4e-115) | Symbols: AAP6 | amino acid permease 6 | chr5:20142681-20146441 REVERSE LENGTH=481;; (*ITAG) Solyc04g077050.2.1 (e_value=2e-131) genomic_reference:SL2.40ch04 gene_region:59610240-59614909 transcript_region:SL2.40ch04:59610240..59614909+ go_terms:GO:0015175,GO:0015172 functional_description:"Amino acid permease 6 (AHRD V1 **** Q7Y076_BRANA); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015175,GO:0015172 NbS00022183g0013.1 protein AED:0.18 eAED:0.19 QI:813|0.87|0.88|1|1|1|9|334|529; (*GB) gi|359476287|ref|XP_003631811.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100262753 isoform 2 [Vitis vinifera];; (*TAIR) AT2G26270.1 (e_value=4e-154) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11184739-11187659 FORWARD LENGTH=470;; (*ITAG) Solyc08g067240.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53474309-53480890 transcript_region:SL2.40ch08:53474309..53480890- go_terms:GO:0005622 functional_description:"DNA topoisomerase 2-binding protein 1 (AHRD V1 *--- TOPB1_MOUSE); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00022183g0003.1 protein AED:0.21 eAED:0.21 QI:0|0|0|1|1|1|2|0|171; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=2e-28) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g044710.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00022183g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.87|0.66|0.88|0.87|0.88|9|0|673; (*GB) gi|255550227|ref|XP_002516164.1| (e_value=0.0) DNA cross-link repair protein pso2/snm1, putative [Ricinus communis];; (*SWP) sp|Q5QJC4|DCR1A_CHICK (e_value=9e-58) DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1;; (*TAIR) AT2G45700.1 (e_value=0.0) | Symbols: | sterile alpha motif (SAM) domain-containing protein | chr2:18827216-18830505 REVERSE LENGTH=723;; (*ITAG) Solyc08g067250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53497454-53507180 transcript_region:SL2.40ch08:53497454..53507180+ functional_description:"DNA cross-link repair 1A protein (AHRD V1 *-*- B0XKM0_CULQU); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00007474g0001.1 protein AED:0.19 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|255571275|ref|XP_002526587.1| (e_value=3e-76) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G03210.1 (e_value=1e-64) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:740987-742093 FORWARD LENGTH=368;; (*ITAG) Solyc03g031850.1.1 (e_value=1e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8594893-8595975 transcript_region:SL2.40ch03:8594893..8595975- functional_description:"Unknown Protein (AHRD V1)"; NbS00017098g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|0.66|0.5|4|239|339; (*GB) gi|325516260|gb|ADZ24708.1| (e_value=0.0) 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase 1 [Solanum pennellii];; (*SWP) sp|P23525|IN37_SPIOL (e_value=3e-177) 37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G63410.1 (e_value=8e-168) | Symbols: APG1, VTE3, IEP37, E37 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:23415816-23417002 REVERSE LENGTH=338;; (*ITAG) Solyc09g065730.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59613799-59616601 transcript_region:SL2.40ch09:59613799..59616601- go_terms:GO:0051741 functional_description:"Methyltransferase (AHRD V1 *-** A0QNM6_MYCS2); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0051741 NbS00017098g0009.1 protein AED:0.19 eAED:0.19 QI:267|0.92|0.78|1|0.84|0.85|14|322|666; (*GB) gi|296084496|emb|CBI25055.3| (e_value=4e-90) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9CR16|PPID_MOUSE (e_value=2e-59) Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3;; (*TAIR) AT3G63400.3 (e_value=1e-81) | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:23412449-23415435 FORWARD LENGTH=570;; (*ITAG) Solyc09g065720.2.1 (e_value=3e-108) genomic_reference:SL2.40ch09 gene_region:59607919-59613459 transcript_region:SL2.40ch09:59607919..59613459+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- B9H8E5_POPTR); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00031342g0104.1 protein AED:0.07 eAED:0.09 QI:0|0|0|1|0|0|3|0|179 NbS00009051g0007.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0|1|1|1|3|0|249; (*GB) gi|30013659|gb|AAP03872.1| (e_value=1e-120) putative photosystem I subunit III precursor [Nicotiana tabacum];; (*SWP) sp|P46486|PSAF_FLATR (e_value=9e-98) Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1;; (*TAIR) AT1G31330.1 (e_value=8e-96) | Symbols: PSAF | photosystem I subunit F | chr1:11215011-11215939 REVERSE LENGTH=221;; (*ITAG) Solyc02g069450.2.1 (e_value=7e-112) genomic_reference:SL2.40ch02 gene_region:33915687-33919252 transcript_region:SL2.40ch02:33915687..33919252- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit III (AHRD V1 ***- Q9XQB4_PHAAU); contains Interpro domain(s) IPR003666 Photosystem I reaction centre protein PsaF, subunit III "; GO:0009538 NbS00009051g0109.1 protein AED:0.28 eAED:0.28 QI:267|0.64|0.61|1|0.64|0.77|18|91|697 NbS00009051g0108.1 protein AED:0.31 eAED:0.31 QI:0|0|0|0.33|1|1|3|0|258 NbS00009051g0208.1 protein AED:0.05 eAED:0.07 QI:0|0.5|0|0.66|1|1|3|0|355 NbS00010347g0003.1 protein AED:0.18 eAED:0.18 QI:158|1|0.85|1|1|1|7|322|500; (*GB) gi|156103424|gb|ABU48860.1| (e_value=0.0) fucosyltransferase 1 [Nicotiana benthamiana];; (*SWP) sp|Q9FX97|FUT12_ARATH (e_value=0.0) Putative fucosyltransferase-like protein OS=Arabidopsis thaliana GN=FUT12 PE=2 SV=1;; (*TAIR) AT1G49710.1 (e_value=0.0) | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase 12 | chr1:18391622-18393769 REVERSE LENGTH=513;; (*ITAG) Solyc01g108110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00032487g0008.1 protein AED:0.05 eAED:0.05 QI:203|0.75|0.8|1|0.5|0.4|5|293|349; (*GB) gi|225446561|ref|XP_002279857.1| (e_value=2e-176) PREDICTED: uncharacterized protein LOC100255693 [Vitis vinifera];; (*TAIR) AT1G29050.1 (e_value=9e-159) | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38 | chr1:10136376-10139082 REVERSE LENGTH=380;; (*ITAG) Solyc10g008030.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2196279-2199472 transcript_region:SL2.40ch10:2196279..2199472+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00032487g0007.1 protein AED:0.11 eAED:0.08 QI:0|1|0|1|1|1|3|0|575; (*GB) gi|110739182|dbj|BAF01507.1| (e_value=2e-14) seed maturation protein [Arabidopsis thaliana];; (*SWP) sp|P20075|LEAD8_DAUCA (e_value=8e-14) Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1;; (*TAIR) AT2G42560.1 (e_value=5e-17) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr2:17714813-17716821 REVERSE LENGTH=635;; (*ITAG) Solyc10g008040.2.1 (e_value=7e-88) genomic_reference:SL2.40ch10 gene_region:2200853-2203090 transcript_region:SL2.40ch10:2200853..2203090+ go_terms:GO:0019028 functional_description:"Seed biotin-containing protein SBP65 (AHRD V1 *-*- SBP65_PEA); contains Interpro domain(s) IPR006777 Microvirus H protein (pilot protein) "; GO:0019028 NbS00031665g0003.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|407; (*GB) gi|30013683|gb|AAP03884.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 74 [Nicotiana tabacum];; (*SWP) sp|Q5PNY6|PUB21_ARATH (e_value=1e-96) U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1;; (*TAIR) AT5G37490.1 (e_value=8e-98) | Symbols: | ARM repeat superfamily protein | chr5:14887744-14889051 FORWARD LENGTH=435;; (*ITAG) Solyc04g008100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1757824-1759152 transcript_region:SL2.40ch04:1757824..1759152- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00031665g0012.1 protein AED:0.16 eAED:0.17 QI:302|0.83|0.69|0.92|0.75|0.84|13|0|1043; (*GB) gi|370988691|dbj|BAL43559.1| (e_value=0.0) cytokinin receptor histidine protein kinase [Petunia x hybrida];; (*SWP) sp|Q9C5U0|AHK4_ARATH (e_value=0.0) Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1;; (*TAIR) AT2G01830.1 (e_value=0.0) | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain containing histidine kinase protein | chr2:363332-367429 REVERSE LENGTH=1057;; (*ITAG) Solyc04g008110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1762165-1770080 transcript_region:SL2.40ch04:1762165..1770080- go_terms:GO:0004673 functional_description:"Histidine kinase 2 (AHRD V1 **** A3QVR9_LOTJA); contains Interpro domain(s) IPR006189 CHASE "; GO:0004673 NbS00031665g0013.1 protein AED:0.24 eAED:0.25 QI:0|0|0.25|1|0|0.25|4|0|202; (*GB) gi|187372978|gb|ACD03223.1| (e_value=2e-94) xyloglucan endotransglucosylase/hydrolase 13 [Actinidia deliciosa];; (*SWP) sp|Q38909|XTH28_ARATH (e_value=6e-78) Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1;; (*TAIR) AT1G14720.1 (e_value=5e-79) | Symbols: XTR2, EXGT-A2, ATXTH28, XTH28 | xyloglucan endotransglucosylase/hydrolase 28 | chr1:5066806-5068466 REVERSE LENGTH=332;; (*ITAG) Solyc04g008210.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1894160-1896580 transcript_region:SL2.40ch04:1894160..1896580+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 13 (AHRD V1 **** C0IRH2_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00020702g0003.1 protein AED:0.01 eAED:0.01 QI:218|1|1|1|1|1|3|125|204; (*GB) gi|356568182|ref|XP_003552292.1| (e_value=6e-58) PREDICTED: protein LURP-one-related 15-like [Glycine max];; (*SWP) sp|Q9LZX1|LOR15_ARATH (e_value=1e-51) Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1;; (*TAIR) AT5G01750.2 (e_value=9e-53) | Symbols: | Protein of unknown function (DUF567) | chr5:290034-291109 FORWARD LENGTH=217;; (*ITAG) Solyc10g085420.1.1 (e_value=6e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63936550-63937877 transcript_region:SL2.40ch10:63936550..63937877+ functional_description:"Os03g0816700 protein (Fragment) (AHRD V1 ***- Q0DMC9_ORYSJ); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00044841g0005.1 protein AED:0.01 eAED:0.12 QI:0|0|0.33|1|0.5|0.33|3|0|144; (*GB) gi|45758711|gb|AAS76635.1| (e_value=3e-37) auxin-repressed protein [Nicotiana tabacum];; (*SWP) sp|Q05349|12KD_FRAAN (e_value=2e-13) Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1;; (*TAIR) AT1G28330.2 (e_value=4e-27) | Symbols: DYL1 | dormancy-associated protein-like 1 | chr1:9934500-9935216 REVERSE LENGTH=132;; (*ITAG) Solyc02g077880.2.1 (e_value=6e-38) genomic_reference:SL2.40ch02 gene_region:37291522-37292600 transcript_region:SL2.40ch02:37291522..37292600+ functional_description:"Auxin-repressed protein (AHRD V1 ***- Q6PXE1_9SOLN); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00047849g0003.1 protein AED:0.17 eAED:0.18 QI:679|0.77|0.8|1|0.88|0.8|10|858|195; (*GB) gi|225456993|ref|XP_002282228.1| (e_value=4e-98) PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q02166|TRPD_ARATH (e_value=8e-91) Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1;; (*TAIR) AT5G17990.1 (e_value=6e-92) | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 | chr5:5957330-5959681 FORWARD LENGTH=444;; (*ITAG) Solyc06g071550.2.1 (e_value=4e-110) genomic_reference:SL2.40ch06 gene_region:40439408-40443221 transcript_region:SL2.40ch06:40439408..40443221+ go_terms:GO:0004048,GO:0005515 functional_description:"Anthranilate phosphoribosyltransferase (AHRD V1 **** A8IBN0_CHLRE); contains Interpro domain(s) IPR005940 Anthranilate phosphoribosyl transferase "; GO:0004048,GO:0005515 NbS00022515g0006.1 protein AED:0.09 eAED:0.09 QI:662|1|1|1|0.5|0.33|3|509|104; (*GB) gi|356567739|ref|XP_003552074.1| (e_value=7e-55) PREDICTED: uncharacterized protein At4g29660-like [Glycine max];; (*SWP) sp|Q94K18|Y4966_ARATH (e_value=2e-45) Uncharacterized protein At4g29660 OS=Arabidopsis thaliana GN=EMB2752 PE=4 SV=1;; (*TAIR) AT4G29660.1 (e_value=2e-46) | Symbols: EMB2752 | embryo defective 2752 | chr4:14534495-14535171 REVERSE LENGTH=103;; (*ITAG) Solyc12g008810.1.1 (e_value=2e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2150650-2152871 transcript_region:SL2.40ch12:2150650..2152871- functional_description:"Unknown Protein (AHRD V1)"; NbS00022515g0007.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|148; (*GB) gi|388784841|gb|AFK78107.1| (e_value=5e-21) GATA-like transcription factor [Nicotiana tabacum];; (*ITAG) Solyc12g008830.1.1 (e_value=7e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:2159138-2161186 transcript_region:SL2.40ch12:2159138..2161186- go_terms:GO:0006355 functional_description:"GATA transcription factor 20 (AHRD V1 *-*- B6SS40_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00031108g0003.1 protein AED:0.30 eAED:0.37 QI:0|0|0|1|1|1|2|0|146; (*GB) gi|14329816|emb|CAC40755.1| (e_value=9e-63) putative prepo-beta-,3-glucanase precursor [Atropa belladonna];; (*SWP) sp|P23546|E13E_TOBAC (e_value=9e-63) Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=3e-42) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g060020.2.1 (e_value=3e-60) genomic_reference:SL2.40ch01 gene_region:62224181-62226272 transcript_region:SL2.40ch01:62224181..62226272- go_terms:GO:0005975 functional_description:"Beta-glucanase (AHRD V1 ***- Q53X08_NICPL); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00031108g0010.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|285; (*GB) gi|255556364|ref|XP_002519216.1| (e_value=4e-21) enzyme inhibitor, putative [Ricinus communis];; (*TAIR) AT3G36659.1 (e_value=5e-13) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr3:2100189-2100983 FORWARD LENGTH=264;; (*ITAG) Solyc01g059940.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:62164693-62165761 transcript_region:SL2.40ch01:62164693..62165761+ go_terms:GO:0030599 functional_description:"Pectinesterase inhibitor (AHRD V1 *-*- A2Q2X5_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00031108g0013.1 protein AED:0.40 eAED:0.44 QI:0|0.5|0|1|0.5|0.33|3|0|169; (*GB) gi|255556366|ref|XP_002519217.1| (e_value=2e-84) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G17020.1 (e_value=2e-72) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:5802728-5804063 REVERSE LENGTH=163;; (*ITAG) Solyc01g059930.2.1 (e_value=9e-101) genomic_reference:SL2.40ch01 gene_region:62161025-62163678 transcript_region:SL2.40ch01:62161025..62163678+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- D6BRD7_9ROSI); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00014964g0002.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|396; (*GB) gi|296082490|emb|CBI21495.3| (e_value=5e-133) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64950.1 (e_value=4e-87) | Symbols: | Mitochondrial transcription termination factor family protein | chr5:25953887-25955062 FORWARD LENGTH=391;; (*ITAG) Solyc04g011700.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:4166764-4167942 transcript_region:SL2.40ch04:4166764..4167942- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00014964g0013.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0|0|3|0|473; (*GB) gi|388510290|gb|AFK43211.1| (e_value=4e-106) unknown [Lotus japonicus];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=2e-84) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT5G64790.1 (e_value=1e-91) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr5:25902713-25904559 FORWARD LENGTH=485;; (*ITAG) Solyc04g011730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4184455-4186832 transcript_region:SL2.40ch04:4184455..4186832- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6UAM9_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00014964g0012.1 protein AED:0.13 eAED:0.15 QI:1211|0|0.66|1|1|1|3|197|198; (*GB) gi|224093832|ref|XP_002310011.1| (e_value=4e-109) predicted protein [Populus trichocarpa];; (*SWP) sp|O64635|C76C4_ARATH (e_value=5e-71) Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1;; (*TAIR) AT2G45550.1 (e_value=4e-72) | Symbols: CYP76C4 | cytochrome P450, family 76, subfamily C, polypeptide 4 | chr2:18773541-18775654 REVERSE LENGTH=511;; (*ITAG) Solyc04g011680.1.1 (e_value=2e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4155951-4157897 transcript_region:SL2.40ch04:4155951..4157897- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00014964g0014.1 protein AED:0.05 eAED:0.05 QI:0|0|0|1|0|0|2|0|739; (*GB) gi|148909961|gb|ABR18065.1| (e_value=0.0) unknown [Picea sitchensis];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=0.0) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc06g062950.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36119748-36122078 transcript_region:SL2.40ch06:36119748..36122078- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019266g0004.1 protein AED:0.12 eAED:0.19 QI:54|1|0.66|1|0.8|0.83|6|0|210; (*GB) gi|255583651|ref|XP_002532580.1| (e_value=4e-147) cop9 signalosome complex subunit, putative [Ricinus communis];; (*SWP) sp|Q8W207|CSN2_ARATH (e_value=8e-130) COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1;; (*TAIR) AT2G26990.1 (e_value=6e-131) | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome family protein | chr2:11519684-11522412 REVERSE LENGTH=439;; (*ITAG) Solyc01g008840.2.1 (e_value=8e-150) genomic_reference:SL2.40ch01 gene_region:2864398-2872190 transcript_region:SL2.40ch01:2864398..2872190+ go_terms:GO:0003714 functional_description:"COP9 signalosome complex subunit 2 (AHRD V1 ***- B6TIW9_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0003714 NbS00045464g0001.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|1134; (*GB) gi|359480096|ref|XP_003632398.1| (e_value=0.0) PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Vitis vinifera];; (*SWP) sp|C0LGV1|RCH1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1;; (*TAIR) AT5G48940.1 (e_value=0.0) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr5:19839785-19843744 FORWARD LENGTH=1135;; (*ITAG) Solyc09g061940.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:56361527-56365006 transcript_region:SL2.40ch09:56361527..56365006+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00045464g0005.1 protein AED:0.06 eAED:0.06 QI:0|0.8|0.66|1|1|1|6|0|708; (*GB) gi|2661460|emb|CAA05921.1| (e_value=7e-163) ABI3 [Populus trichocarpa];; (*SWP) sp|Q01593|ABI3_ARATH (e_value=2e-130) B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1;; (*TAIR) AT3G24650.1 (e_value=1e-131) | Symbols: ABI3, SIS10 | AP2/B3-like transcriptional factor family protein | chr3:8997911-9000780 FORWARD LENGTH=720;; (*ITAG) Solyc06g083600.1.1 (e_value=2e-172) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45247406-45250350 transcript_region:SL2.40ch06:45247406..45250350+ go_terms:GO:0016563,GO:0003700 functional_description:"B3 domain-containing transcription factor ABI3 (AHRD V1 **-* ABI3_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0016563,GO:0003700 NbS00059095g0003.1 protein AED:0.11 eAED:0.14 QI:0|0.6|0.33|1|0.8|0.66|6|0|466; (*GB) gi|255566464|ref|XP_002524217.1| (e_value=3e-176) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|O22285|PMTB_ARATH (e_value=2e-171) Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1;; (*TAIR) AT2G39750.1 (e_value=1e-172) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16578986-16582281 REVERSE LENGTH=694;; (*ITAG) Solyc05g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62285580-62291311 transcript_region:SL2.40ch05:62285580..62291311+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00048013g0001.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|771; (*GB) gi|225430295|ref|XP_002282684.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5-like [Vitis vinifera];; (*SWP) sp|Q8RWZ5|SD25_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1;; (*TAIR) AT4G32300.1 (e_value=0.0) | Symbols: SD2-5 | S-domain-2 5 | chr4:15599970-15602435 FORWARD LENGTH=821;; (*ITAG) Solyc08g059730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42426759-42429185 transcript_region:SL2.40ch08:42426759..42429185+ go_terms:GO:0030246,GO:0004672 functional_description:"S-receptor kinase -like protein (AHRD V1 **** O49361_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0030246,GO:0004672 NbS00026735g0010.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.57|1|0.5|0.57|7|0|527; (*GB) gi|302141765|emb|CBI18968.3| (e_value=1e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q800K6|TOB1A_XENLA (e_value=7e-13) DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2;; (*TAIR) AT1G77320.2 (e_value=2e-108) | Symbols: MEI1 | transcription coactivators | chr1:29056740-29062710 FORWARD LENGTH=955;; (*ITAG) Solyc01g068260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69767291-69780529 transcript_region:SL2.40ch01:69767291..69780529- go_terms:GO:0003713 functional_description:"BRCT domain-containing protein (AHRD V1 *--- D3BB36_POLPA); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713 NbS00026735g0008.1 protein AED:0.11 eAED:0.11 QI:0|1|0.33|1|0.5|0.66|3|0|96; (*GB) gi|302141765|emb|CBI18968.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G77320.1 (e_value=1e-39) | Symbols: MEI1 | transcription coactivators | chr1:29056740-29062710 FORWARD LENGTH=972;; (*ITAG) Solyc01g068260.2.1 (e_value=1e-49) genomic_reference:SL2.40ch01 gene_region:69767291-69780529 transcript_region:SL2.40ch01:69767291..69780529- go_terms:GO:0003713 functional_description:"BRCT domain-containing protein (AHRD V1 *--- D3BB36_POLPA); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713 NbS00026735g0009.1 protein AED:0.22 eAED:0.22 QI:53|1|0|1|0|0.5|2|49|49 NbS00026735g0011.1 protein AED:0.07 eAED:0.07 QI:368|1|1|1|0.66|0.71|7|660|536; (*GB) gi|356542965|ref|XP_003539934.1| (e_value=0.0) PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max];; (*SWP) sp|Q9FPS3|UBP24_ARATH (e_value=2e-157) Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1;; (*TAIR) AT4G30890.3 (e_value=1e-158) | Symbols: UBP24 | ubiquitin-specific protease 24 | chr4:15036383-15038825 REVERSE LENGTH=551;; (*ITAG) Solyc01g068240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69744121-69754161 transcript_region:SL2.40ch01:69744121..69754161+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** D7MBK9_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00011257g0009.1 protein AED:0.05 eAED:0.05 QI:0|0.85|0.75|1|0.71|0.62|8|0|509; (*GB) gi|359497499|ref|XP_003635541.1| (e_value=3e-175) PREDICTED: AP2-like ethylene-responsive transcription factor AIL6-like [Vitis vinifera];; (*SWP) sp|Q52QU2|AIL6_ARATH (e_value=9e-145) AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1;; (*TAIR) AT5G10510.2 (e_value=7e-146) | Symbols: AIL6 | AINTEGUMENTA-like 6 | chr5:3315991-3320008 FORWARD LENGTH=581;; (*ITAG) Solyc11g010710.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3758647-3764093 transcript_region:SL2.40ch11:3758647..3764093+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00032853g0007.1 protein AED:0.40 eAED:0.41 QI:0|1|0.33|1|0|0|3|0|188; (*GB) gi|297742316|emb|CBI34465.3| (e_value=1e-73) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G64355.1 (e_value=8e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). | chr1:23886152-23886987 FORWARD LENGTH=199;; (*ITAG) Solyc08g008270.2.1 (e_value=2e-104) genomic_reference:SL2.40ch08 gene_region:2698913-2701302 transcript_region:SL2.40ch08:2698913..2701302+ functional_description:"Uncharacterized conserved membrane protein (AHRD V1 *--- Q46L34_PROMT)"; NbS00032853g0011.1 protein AED:0.17 eAED:0.18 QI:0|0.33|0|1|0|0.5|4|0|337; (*GB) gi|209978913|gb|ACJ04728.1| (e_value=4e-160) WRKY transcription factor-30 [Capsicum annuum];; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=2e-49) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.2 (e_value=3e-51) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281;; (*ITAG) Solyc08g008280.2.1 (e_value=3e-178) genomic_reference:SL2.40ch08 gene_region:2704613-2706561 transcript_region:SL2.40ch08:2704613..2706561- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0019900 NbS00032853g0004.1 protein AED:0.43 eAED:0.47 QI:0|0|0|1|1|1|2|0|90; (*GB) gi|388499454|gb|AFK37793.1| (e_value=9e-25) unknown [Medicago truncatula];; (*SWP) sp|Q9C7W2|ERF61_ARATH (e_value=4e-24) Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1;; (*TAIR) AT1G64380.1 (e_value=3e-25) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:23890981-23891988 REVERSE LENGTH=335;; (*ITAG) Solyc08g082210.2.1 (e_value=4e-26) genomic_reference:SL2.40ch08 gene_region:62221339-62222646 transcript_region:SL2.40ch08:62221339..62222646- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00032853g0006.1 protein AED:0.00 eAED:0.00 QI:0|0|0|1|0|0|2|0|845; (*GB) gi|255537723|ref|XP_002509928.1| (e_value=5e-70) Coiled-coil domain-containing protein, putative [Ricinus communis];; (*TAIR) AT5G41790.1 (e_value=2e-30) | Symbols: CIP1 | COP1-interactive protein 1 | chr5:16727530-16732391 FORWARD LENGTH=1586;; (*ITAG) Solyc08g008260.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2692144-2695984 transcript_region:SL2.40ch08:2692144..2695984+ functional_description:"Genomic DNA chromosome 5 TAC clone K16L22 (AHRD V1 *-*- Q9FJ36_ARATH)"; NbS00062017g0002.1 protein AED:0.35 eAED:0.46 QI:0|0|0|1|0|0.5|2|0|128; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-26) hypothetical protein [Nicotiana tabacum]; NbS00010388g0004.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|1|1|2|310|321; (*GB) gi|30013681|gb|AAP03883.1| (e_value=1e-146) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*SWP) sp|O80871|P2C25_ARATH (e_value=2e-114) Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1;; (*TAIR) AT2G30020.1 (e_value=2e-115) | Symbols: | Protein phosphatase 2C family protein | chr2:12814437-12815904 FORWARD LENGTH=396;; (*ITAG) Solyc06g082080.2.1 (e_value=2e-172) genomic_reference:SL2.40ch06 gene_region:44304768-44306777 transcript_region:SL2.40ch06:44304768..44306777+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00028264g0004.1 protein AED:0.04 eAED:0.04 QI:79|0.66|0.5|1|1|0.75|4|0|114; (*GB) gi|356510094|ref|XP_003523775.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100796201 [Glycine max];; (*ITAG) Solyc11g064860.1.1 (e_value=2e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47199147-47211963 transcript_region:SL2.40ch11:47199147..47211963+ functional_description:"Pleckstrin homology (PH) domain-containing protein-like (AHRD V1 *--- Q5QLP4_ORYSJ); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00019097g0005.1 protein AED:0.05 eAED:0.05 QI:364|0.83|0.85|1|0.66|0.57|7|394|545; (*GB) gi|356540639|ref|XP_003538794.1| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At5g67385-like [Glycine max];; (*SWP) sp|Q66GP0|Y5738_ARATH (e_value=0.0) BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2;; (*TAIR) AT5G67385.1 (e_value=0.0) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26884754-26887083 FORWARD LENGTH=604;; (*ITAG) Solyc02g092560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48190481-48194067 transcript_region:SL2.40ch02:48190481..48194067- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00019097g0001.1 protein AED:0.80 eAED:0.80 QI:0|0|0|0.25|1|1|4|0|123; (*GB) gi|194466179|gb|ACF74320.1| (e_value=9e-38) unknown [Arachis hypogaea];; (*SWP) sp|O64818|Y2309_ARATH (e_value=4e-32) Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1;; (*TAIR) AT2G23090.1 (e_value=3e-33) | Symbols: | Uncharacterised protein family SERF | chr2:9829657-9830274 REVERSE LENGTH=78;; (*ITAG) Solyc02g064730.2.1 (e_value=2e-40) genomic_reference:SL2.40ch02 gene_region:30412691-30418734 transcript_region:SL2.40ch02:30412691..30418734- functional_description:"Expressed protein having alternate splicing products (AHRD V1 *--- Q75KB8_ORYSJ); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 "; NbS00026215g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|472; (*GB) gi|224134907|ref|XP_002327519.1| (e_value=0.0) amino acid transporter [Populus trichocarpa];; (*SWP) sp|Q503G8|S38A6_DANRE (e_value=2e-19) Probable sodium-coupled neutral amino acid transporter 6 OS=Danio rerio GN=slc38a6 PE=2 SV=1;; (*TAIR) AT1G80510.1 (e_value=0.0) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00026215g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|113205399|gb|AAU90302.2| (e_value=8e-13) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc12g044970.1.1 (e_value=7e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45782876-45787477 transcript_region:SL2.40ch12:45782876..45787477- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00026354g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|277; (*GB) gi|302141747|emb|CBI18950.3| (e_value=2e-113) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39112|GAOX3_ARATH (e_value=3e-83) Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1;; (*TAIR) AT5G07200.1 (e_value=3e-84) | Symbols: YAP169, GA20OX3, ATGA20OX3 | gibberellin 20-oxidase 3 | chr5:2243835-2245157 REVERSE LENGTH=380;; (*ITAG) Solyc11g013360.1.1 (e_value=6e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:6347451-6350521 transcript_region:SL2.40ch11:6347451..6350521- go_terms:GO:0016491,GO:0055114 functional_description:"Gibberellin 20-oxidase (AHRD V1 ***- B9H7K4_POPTR); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491,GO:0055114 NbS00026354g0007.1 protein AED:0.28 eAED:0.28 QI:445|1|0.94|1|0.94|0.94|18|0|721; (*GB) gi|297734578|emb|CBI16629.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RXD6|BRE1A_ARATH (e_value=0.0) E3 ubiquitin-protein ligase BRE1-like 1 OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1;; (*TAIR) AT2G44950.1 (e_value=0.0) | Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 | chr2:18542602-18548247 REVERSE LENGTH=878;; (*ITAG) Solyc11g013370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6351744-6371862 transcript_region:SL2.40ch11:6351744..6371862- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase bre1 (AHRD V1 *-*- B6K254_SCHJY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00004344g0005.1 protein AED:0.12 eAED:0.25 QI:0|0.5|0.4|1|0.75|0.6|5|0|133; (*GB) gi|225453839|ref|XP_002277624.1| (e_value=4e-42) PREDICTED: MADS-box protein 3 [Vitis vinifera];; (*SWP) sp|P29386|AGL6_ARATH (e_value=1e-23) Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2;; (*TAIR) AT2G45650.1 (e_value=7e-25) | Symbols: AGL6 | AGAMOUS-like 6 | chr2:18804453-18806291 FORWARD LENGTH=252;; (*ITAG) Solyc01g093960.2.1 (e_value=3e-47) genomic_reference:SL2.40ch01 gene_region:77295932-77301086 transcript_region:SL2.40ch01:77295932..77301086- go_terms:GO:0005515 functional_description:"MADS box transcription factor (AHRD V1 ***- Q2NNC0_ELAGV); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005515 NbS00059489g0001.1 protein AED:0.28 eAED:0.33 QI:0|0|0|1|1|1|2|0|112; (*GB) gi|225427810|ref|XP_002270504.1| (e_value=1e-59) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=2e-21) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT4G34760.1 (e_value=1e-56) | Symbols: | SAUR-like auxin-responsive protein family | chr4:16582471-16582794 REVERSE LENGTH=107;; (*ITAG) Solyc01g110570.2.1 (e_value=7e-66) genomic_reference:SL2.40ch01 gene_region:88986574-88987218 transcript_region:SL2.40ch01:88986574..88987218- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 **-- Q8S349_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00054330g0009.1 protein AED:0.13 eAED:0.14 QI:132|0.58|0.61|1|0.5|0.53|13|253|1274; (*GB) gi|255582930|ref|XP_002532236.1| (e_value=0.0) heavy metal cation transport atpase, putative [Ricinus communis];; (*SWP) sp|Q9SZW4|HMA2_ARATH (e_value=0.0) Cadmium/zinc-transporting ATPase HMA2 OS=Arabidopsis thaliana GN=HMA2 PE=2 SV=1;; (*TAIR) AT4G30110.1 (e_value=0.0) | Symbols: HMA2, ATHMA2 | heavy metal atpase 2 | chr4:14720253-14724577 REVERSE LENGTH=951;; (*ITAG) Solyc07g009130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:4107448-4119376 transcript_region:SL2.40ch07:4107448..4119376+ go_terms:GO:0030001,GO:0016020,GO:0008152,GO:0016021 functional_description:"Potassium-transporting ATPase B chain (AHRD V1 *-*- ATKB_BACHK); contains Interpro domain(s) IPR006404 ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating "; GO:0030001,GO:0016020,GO:0008152,GO:0016021 NbS00043386g0007.1 protein AED:0.13 eAED:0.13 QI:0|1|0.81|1|1|1|11|0|476; (*GB) gi|349732085|ref|NP_001231830.1| (e_value=0.0) CLB1 [Solanum lycopersicum];; (*SWP) sp|Q5M7N9|ESYT3_XENTR (e_value=3e-35) Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1;; (*TAIR) AT3G61050.2 (e_value=0.0) | Symbols: NTMC2TYPE4, NTMC2T4 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:22597485-22600932 FORWARD LENGTH=510;; (*ITAG) Solyc10g017590.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5471407-5476519 transcript_region:SL2.40ch10:5471407..5476519+ go_terms:GO:0008289 functional_description:"Syt1 synaptotagmin Ca2+-dependent lipid-binding protein putati (IC) (AHRD V1 *--* Q01EW7_OSTTA); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0008289 NbS00043386g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0|1|0.66|0.75|4|0|472; (*GB) gi|225454079|ref|XP_002266316.1| (e_value=0.0) PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6DW73|DGDG2_LOTJA (e_value=0.0) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=0.0) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc10g017580.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:5463304-5471231 transcript_region:SL2.40ch10:5463304..5471231+ go_terms:GO:0035250 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250 NbS00005569g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.25|4|0|235; (*GB) gi|225453346|ref|XP_002270527.1| (e_value=1e-77) PREDICTED: probable WRKY transcription factor 12 [Vitis vinifera];; (*SWP) sp|Q93WY4|WRK12_ARATH (e_value=4e-51) Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1;; (*TAIR) AT2G44745.1 (e_value=3e-52) | Symbols: | WRKY family transcription factor | chr2:18447482-18449004 REVERSE LENGTH=218;; (*ITAG) Solyc01g089960.2.1 (e_value=4e-82) genomic_reference:SL2.40ch01 gene_region:75418839-75424413 transcript_region:SL2.40ch01:75418839..75424413- go_terms:GO:0045449 functional_description:"WRKY family transcription factor (AHRD V1 *-*- D7LBR5_ARALY); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00001808g0110.1 protein AED:0.22 eAED:0.22 QI:161|1|0.88|1|0.87|1|9|449|383 NbS00001808g0113.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|2|0|120 NbS00001808g0108.1 protein AED:0.12 eAED:0.12 QI:84|0.83|0.71|1|0.5|0.71|7|0|583 NbS00001808g0112.1 protein AED:0.15 eAED:0.52 QI:0|0|0|1|0|0|2|0|168 NbS00001808g0114.1 protein AED:0.41 eAED:0.59 QI:41|0|0|1|0|0|2|0|80 NbS00003315g0001.1 protein AED:0.03 eAED:0.03 QI:71|1|1|1|1|1|2|54|388; (*GB) gi|224139824|ref|XP_002323294.1| (e_value=0.0) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q42798|C93A1_SOYBN (e_value=1e-150) Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1;; (*TAIR) AT5G06900.1 (e_value=1e-110) | Symbols: CYP93D1 | cytochrome P450, family 93, subfamily D, polypeptide 1 | chr5:2136160-2137925 REVERSE LENGTH=507;; (*ITAG) Solyc01g010260.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5060341-5062538 transcript_region:SL2.40ch01:5060341..5062538+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003315g0012.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0|1|0.66|0.5|4|0|463; (*GB) gi|225441676|ref|XP_002277107.1| (e_value=5e-170) PREDICTED: cytochrome P450 93A1 [Vitis vinifera];; (*SWP) sp|Q42798|C93A1_SOYBN (e_value=2e-138) Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1;; (*TAIR) AT5G06900.1 (e_value=6e-127) | Symbols: CYP93D1 | cytochrome P450, family 93, subfamily D, polypeptide 1 | chr5:2136160-2137925 REVERSE LENGTH=507;; (*ITAG) Solyc01g010260.2.1 (e_value=2e-172) genomic_reference:SL2.40ch01 gene_region:5060341-5062538 transcript_region:SL2.40ch01:5060341..5062538+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003315g0004.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.66|1|1|3|0|60 NbS00061114g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.6|1|0.25|0.6|5|0|407; (*GB) gi|224057248|ref|XP_002299193.1| (e_value=7e-125) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WVD6|ANM3_ARATH (e_value=3e-106) Probable protein arginine N-methyltransferase 3 OS=Arabidopsis thaliana GN=PRMT3 PE=2 SV=1;; (*TAIR) AT3G12270.1 (e_value=2e-107) | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601;; (*ITAG) Solyc01g096550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79391836-79397141 transcript_region:SL2.40ch01:79391836..79397141+ go_terms:GO:0035242 functional_description:"Protein arginine methyltransferase (AHRD V1 *-** C1E5H4_9CHLO); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00032410g0010.1 protein AED:0.25 eAED:0.25 QI:0|0.6|0.33|1|0.8|0.5|6|212|411; (*GB) gi|359480940|ref|XP_002267053.2| (e_value=4e-175) PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=5e-43) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G33110.2 (e_value=1e-123) | Symbols: | MATE efflux family protein | chr1:12005084-12008040 FORWARD LENGTH=404;; (*ITAG) Solyc03g063730.2.1 (e_value=2e-175) genomic_reference:SL2.40ch03 gene_region:33111955-33115211 transcript_region:SL2.40ch03:33111955..33115211+ go_terms:GO:0005215 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00032410g0009.1 protein AED:0.22 eAED:0.52 QI:0|0|0|1|0|0.5|2|0|180; (*GB) gi|147858176|emb|CAN81825.1| (e_value=8e-28) hypothetical protein VITISV_014168 [Vitis vinifera];; (*TAIR) AT1G02205.1 (e_value=2e-22) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:419650-422154 FORWARD LENGTH=461;; (*ITAG) Solyc01g088400.2.1 (e_value=4e-28) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00032410g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|529; (*GB) gi|296081017|emb|CBI18521.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-71) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G35510.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:13071486-13074675 FORWARD LENGTH=568;; (*ITAG) Solyc04g045470.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:32668954-32691178 transcript_region:SL2.40ch04:32668954..32691178+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 ***- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00033130g0009.1 protein AED:0.02 eAED:0.11 QI:15|1|0.33|1|1|1|3|0|438; (*GB) gi|255539649|ref|XP_002510889.1| (e_value=0.0) peptidase, putative [Ricinus communis];; (*SWP) sp|P36163|OMA1_YEAST (e_value=3e-31) Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2;; (*TAIR) AT5G51740.1 (e_value=0.0) | Symbols: | Peptidase family M48 family protein | chr5:21017110-21018987 FORWARD LENGTH=442;; (*ITAG) Solyc03g007000.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1549030-1554645 transcript_region:SL2.40ch03:1549030..1554645- go_terms:GO:0016020 functional_description:"Peptidase M48 Ste24p (AHRD V1 *-*- D1N2Y3_9BACT); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00033130g0011.1 protein AED:0.12 eAED:0.13 QI:80|0.87|0.82|1|1|0.94|17|0|810; (*GB) gi|359490274|ref|XP_002269873.2| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Vitis vinifera];; (*SWP) sp|Q41382|RH7_SPIOL (e_value=0.0) DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1;; (*TAIR) AT5G62190.1 (e_value=0.0) | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980542-24983879 REVERSE LENGTH=671;; (*ITAG) Solyc03g007010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1555122-1560373 transcript_region:SL2.40ch03:1555122..1560373- go_terms:GO:0004004,GO:0017151 functional_description:"ATP-dependent DEAD-box RNA helicase DeaD (AHRD V1 *-** D5SAR5_9MICC); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0017151 NbS00017995g0115.1 protein AED:0.11 eAED:0.16 QI:0|0.69|0.64|1|0.46|0.5|14|0|987 NbS00017995g0113.1 protein AED:0.29 eAED:0.29 QI:0|0.33|0.5|1|0.33|0.25|4|42|177 NbS00017995g0111.1 protein AED:0.00 eAED:0.00 QI:169|1|1|1|1|1|2|239|99 NbS00032778g0001.1 protein AED:0.29 eAED:0.31 QI:151|0.5|0|1|1|1|3|0|220; (*ITAG) Solyc03g097080.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00058090g0001.1 protein AED:0.14 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|179; (*ITAG) Solyc02g021490.1.1 (e_value=5e-46) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:13682623-13683318 transcript_region:SL2.40ch02:13682623..13683318- functional_description:"Unknown Protein (AHRD V1)"; NbS00014508g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|298; (*GB) gi|225431591|ref|XP_002282621.1| (e_value=6e-147) PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q69ZQ2|ISY1_MOUSE (e_value=9e-67) Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1 PE=1 SV=2;; (*TAIR) AT3G18790.1 (e_value=1e-130) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink). | chr3:6477853-6478755 FORWARD LENGTH=300;; (*ITAG) Solyc05g051070.2.1 (e_value=1e-162) genomic_reference:SL2.40ch05 gene_region:60422107-60429626 transcript_region:SL2.40ch05:60422107..60429626- functional_description:"Pre-mRNA-splicing factor ISY1 (AHRD V1 ***- B6T8I4_MAIZE); contains Interpro domain(s) IPR009360 Isy1-like splicing "; NbS00053999g0002.1 protein AED:0.01 eAED:0.01 QI:131|1|1|1|0|0|2|144|107; (*GB) gi|53748443|emb|CAH59418.1| (e_value=4e-17) hypothetical protein [Plantago major];; (*TAIR) AT1G24577.1 (e_value=1e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8712758-8712985 REVERSE LENGTH=75;; (*ITAG) Solyc05g013560.2.1 (e_value=4e-31) genomic_reference:SL2.40ch05 gene_region:6839571-6840648 transcript_region:SL2.40ch05:6839571..6840648+ functional_description:"Genomic DNA chromosome 5 P1 clone MDA7 (AHRD V1 *-*- Q9FKU6_ARATH)"; NbS00036542g0007.1 protein AED:0.01 eAED:0.01 QI:67|0.83|0.71|1|0.33|0.42|7|248|319; (*GB) gi|359473190|ref|XP_003631261.1| (e_value=1e-104) PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2-like [Vitis vinifera];; (*SWP) sp|Q9ZUD9|SRO2_ARATH (e_value=5e-67) Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1;; (*TAIR) AT1G23550.1 (e_value=4e-68) | Symbols: SRO2 | similar to RCD one 2 | chr1:8350912-8352232 FORWARD LENGTH=323;; (*ITAG) Solyc05g005280.2.1 (e_value=6e-147) genomic_reference:SL2.40ch05 gene_region:227383-230131 transcript_region:SL2.40ch05:227383..230131- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00024287g0012.1 protein AED:0.19 eAED:0.21 QI:0|0.6|0.33|1|0.2|0.5|6|0|861; (*GB) gi|255586318|ref|XP_002533810.1| (e_value=5e-65) nuclear receptor binding set domain containing protein 1, nsd, putative [Ricinus communis];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=1e-45) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT2G18090.1 (e_value=4e-52) | Symbols: | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein | chr2:7864501-7867317 FORWARD LENGTH=824;; (*ITAG) Solyc03g033630.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9500784-9507186 transcript_region:SL2.40ch03:9500784..9507186+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 44 (AHRD V1 *--- C3H44_ARATH); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00024287g0009.1 protein AED:0.22 eAED:0.22 QI:0|0.92|0.86|1|0.57|0.66|15|209|678; (*GB) gi|225431211|ref|XP_002272351.1| (e_value=0.0) PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Vitis vinifera];; (*SWP) sp|Q5TGY1|TMCO4_HUMAN (e_value=6e-33) Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1;; (*TAIR) AT4G36210.3 (e_value=0.0) | Symbols: | Protein of unknown function (DUF726) | chr4:17130354-17134302 FORWARD LENGTH=672;; (*ITAG) Solyc03g033640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00024287g0013.1 protein AED:0.46 eAED:0.79 QI:0|0|0|1|0|0|3|0|99 NbS00041617g0014.1 protein AED:0.26 eAED:0.26 QI:573|0.88|0.88|1|0.94|0.88|18|369|607; (*GB) gi|359475913|ref|XP_002272679.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254265 [Vitis vinifera];; (*SWP) sp|P67963|KC1A_XENLA (e_value=5e-59) Casein kinase I isoform alpha OS=Xenopus laevis GN=csnk1a1 PE=2 SV=1;; (*TAIR) AT2G25760.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr2:10985118-10988652 REVERSE LENGTH=673;; (*ITAG) Solyc11g070170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51769917-51774367 transcript_region:SL2.40ch11:51769917..51774367- go_terms:GO:0006468 functional_description:"Casein kinase I (AHRD V1 ***- D8V7I8_SESIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00041617g0012.1 protein AED:0.16 eAED:0.16 QI:118|1|1|1|0.87|0.66|9|300|255; (*GB) gi|359475952|ref|XP_002277697.2| (e_value=8e-99) PREDICTED: uncharacterized protein LOC100245843 [Vitis vinifera];; (*TAIR) AT1G15215.2 (e_value=2e-63) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5238096-5239770 FORWARD LENGTH=258;; (*ITAG) Solyc11g070160.1.1 (e_value=3e-143) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:51758657-51767374 transcript_region:SL2.40ch11:51758657..51767374+ functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 ***- Q0DC52_ORYSJ)"; NbS00041617g0006.1 protein AED:0.16 eAED:0.16 QI:171|1|1|1|0.4|0.66|6|550|317; (*GB) gi|255578282|ref|XP_002530008.1| (e_value=0.0) Pectinesterase precursor, putative [Ricinus communis];; (*SWP) sp|Q9LVQ0|PME31_ARATH (e_value=0.0) Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1;; (*TAIR) AT3G29090.1 (e_value=0.0) | Symbols: PME31, ATPME31 | pectin methylesterase 31 | chr3:11073804-11075335 FORWARD LENGTH=317;; (*ITAG) Solyc00g027770.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:12431213-12436969 transcript_region:SL2.40ch00:12431213..12436969+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9SVI9_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00060452g0002.1 protein AED:0.17 eAED:0.18 QI:0|0|0|1|1|1|2|0|318; (*GB) gi|356500064|ref|XP_003518854.1| (e_value=1e-73) PREDICTED: uncharacterized protein LOC100803045 [Glycine max];; (*TAIR) AT2G15760.1 (e_value=4e-44) | Symbols: | Protein of unknown function (DUF1645) | chr2:6865807-6866754 REVERSE LENGTH=315;; (*ITAG) Solyc01g108440.2.1 (e_value=1e-151) genomic_reference:SL2.40ch01 gene_region:87531095-87532380 transcript_region:SL2.40ch01:87531095..87532380- go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **-* D7L4F9_ARALY); contains Interpro domain(s) IPR012442 Protein of unknown function DUF1645 "; GO:0005516 NbS00021370g0005.1 protein AED:0.24 eAED:0.25 QI:0|0.66|0.75|1|0|0.5|4|373|328; (*GB) gi|356526635|ref|XP_003531922.1| (e_value=2e-126) PREDICTED: uncharacterized protein LOC100809601 [Glycine max];; (*TAIR) AT3G25805.1 (e_value=3e-121) | Symbols: | unknown protein; Has 98 Blast hits to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:9426354-9428169 REVERSE LENGTH=335;; (*ITAG) Solyc04g007110.2.1 (e_value=2e-168) genomic_reference:SL2.40ch04 gene_region:822842-826214 transcript_region:SL2.40ch04:822842..826214- functional_description:"Genomic DNA chromosome 3 TAC clone K13N2 (AHRD V1 *-*- Q9LRZ8_ARATH)"; NbS00040518g0007.1 protein AED:0.06 eAED:0.06 QI:73|1|0.5|1|1|1|2|0|294; (*GB) gi|257831443|gb|ACV71022.1| (e_value=6e-138) UPA23 [Capsicum annuum];; (*TAIR) AT2G28690.1 (e_value=6e-55) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=2e-100) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00040518g0008.1 protein AED:0.34 eAED:0.41 QI:24|0.72|0.75|1|0.09|0.16|12|304|359; (*GB) gi|255580568|ref|XP_002531108.1| (e_value=9e-171) Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q6NMB6|UTR5B_ARATH (e_value=3e-164) UDP-galactose/UDP-glucose transporter 5B OS=Arabidopsis thaliana GN=At5g59740 PE=2 SV=1;; (*TAIR) AT5G59740.1 (e_value=2e-165) | Symbols: | UDP-N-acetylglucosamine (UAA) transporter family | chr5:24070310-24072747 REVERSE LENGTH=344;; (*ITAG) Solyc06g005290.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:295547-304925 transcript_region:SL2.40ch06:295547..304925- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 5 (AHRD V1 **** D7LMW4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00009787g0109.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0.5|0.66|3|0|226 NbS00009787g0101.1 protein AED:0.41 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|278 NbS00042193g0004.1 protein AED:0.22 eAED:0.22 QI:243|1|0.85|1|1|1|7|941|1070; (*GB) gi|291278198|gb|ADD91580.1| (e_value=0.0) calcium ATPase [Nicotiana benthamiana];; (*SWP) sp|Q9M2L4|ACA11_ARATH (e_value=0.0) Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=2 SV=1;; (*TAIR) AT3G57330.1 (e_value=0.0) | Symbols: ACA11 | autoinhibited Ca2+-ATPase 11 | chr3:21211655-21216375 REVERSE LENGTH=1025;; (*ITAG) Solyc04g016260.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7057222-7066683 transcript_region:SL2.40ch04:7057222..7066683+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00002904g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|57013955|ref|YP_173427.1| (e_value=2e-151) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=3e-121) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=4e-148) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=3e-154) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00002904g0005.1 protein AED:0.41 eAED:0.59 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|57013954|ref|YP_173426.1| (e_value=1e-41) hypothetical protein NitaMp085 [Nicotiana tabacum];; (*ITAG) Solyc00g125980.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:16637694-16637897 transcript_region:SL2.40ch00:16637694..16637897+ functional_description:"NADH-ubiquinone oxidoreductase chain 2 (AHRD V1 ***- NU2M_BETVU)"; NbS00017491g0012.1 protein AED:0.36 eAED:0.36 QI:167|1|1|1|0|0|2|573|65 NbS00017491g0013.1 protein AED:0.54 eAED:0.54 QI:5|0|0.33|0.33|1|1|3|0|117 NbS00017491g0011.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.66|1|0.5|0.33|3|691|103 NbS00017491g0014.1 protein AED:0.28 eAED:0.28 QI:123|0.94|0.88|1|0.76|0.94|18|209|456; (*GB) gi|1556429|emb|CAA59008.1| (e_value=0.0) citrate synthase [Nicotiana tabacum];; (*SWP) sp|O80433|CISY_DAUCA (e_value=0.0) Citrate synthase, mitochondrial OS=Daucus carota GN=CS PE=2 SV=1;; (*TAIR) AT2G44350.1 (e_value=0.0) | Symbols: ATCS, CSY4 | Citrate synthase family protein | chr2:18316673-18320524 FORWARD LENGTH=473;; (*ITAG) Solyc01g073740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70355760-70364545 transcript_region:SL2.40ch01:70355760..70364545+ go_terms:GO:0006099,GO:0044262 functional_description:"Citrate synthase (AHRD V1 ***- O24135_TOBAC); contains Interpro domain(s) IPR010109 Citrate synthase, eukaryotic "; GO:0006099,GO:0044262 NbS00017491g0003.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|398; (*GB) gi|260825162|ref|XP_002607536.1| (e_value=1e-11) hypothetical protein BRAFLDRAFT_249405 [Branchiostoma floridae];; (*ITAG) Solyc01g073980.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00006890g0002.1 protein AED:0.23 eAED:0.23 QI:0|0.90|0.75|1|1|1|12|0|1025; (*GB) gi|147810715|emb|CAN76368.1| (e_value=0.0) hypothetical protein VITISV_024584 [Vitis vinifera];; (*SWP) sp|P57997|IF2C_PHAVU (e_value=0.0) Translation initiation factor IF-2, chloroplastic OS=Phaseolus vulgaris GN=IF2CP PE=2 SV=1;; (*TAIR) AT1G17220.1 (e_value=0.0) | Symbols: FUG1 | Translation initiation factor 2, small GTP-binding protein | chr1:5885383-5890165 FORWARD LENGTH=1026;; (*ITAG) Solyc07g056020.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61239469-61248089 transcript_region:SL2.40ch07:61239469..61248089- go_terms:GO:0003743 functional_description:"Translation initiation factor IF-2 (AHRD V1 **** A5B2X2_VITVI); contains Interpro domain(s) IPR000178 Initiation factor 2 "; GO:0003743 NbS00006890g0003.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|67 NbS00006890g0103.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|659 NbS00006890g0132.1 protein AED:0.13 eAED:0.13 QI:133|0.95|0.90|1|0.90|0.90|22|143|1117 NbS00006890g0126.1 protein AED:0.21 eAED:0.24 QI:0|0.5|0.14|1|0.66|0.57|7|0|992 NbS00006890g0107.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|88 NbS00006890g0108.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|74 NbS00006890g0129.1 protein AED:0.06 eAED:0.06 QI:219|0.92|0.92|1|0.69|0.71|14|419|470 NbS00006890g0133.1 protein AED:0.16 eAED:0.16 QI:0|0.5|0.33|1|0|0|3|0|166 NbS00006890g0131.1 protein AED:0.11 eAED:0.17 QI:42|0|0|1|0|0|3|0|269 NbS00060198g0001.1 protein AED:0.35 eAED:0.44 QI:0|0|0|1|1|1|2|0|94; (*GB) gi|255574062|ref|XP_002527947.1| (e_value=1e-23) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3ED15|WAXSA_ARATH (e_value=2e-18) Putative long-chain-alcohol O-fatty-acyltransferase 10 OS=Arabidopsis thaliana GN=At1g34490 PE=3 SV=1;; (*TAIR) AT3G51970.1 (e_value=4e-21) | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345;; (*ITAG) Solyc11g012230.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5125432-5126493 transcript_region:SL2.40ch11:5125432..5126493+ go_terms:GO:0005515,GO:0008415 functional_description:"Wax synthase isoform 3 (AHRD V1 **-- Q84XY7_VITVI)"; GO:0005515,GO:0008415 NbS00012473g0001.1 protein AED:0.32 eAED:0.32 QI:213|0.75|0.6|1|1|1|5|0|354; (*GB) gi|307940738|gb|ADN95983.1| (e_value=2e-114) G-strand specific single-stranded telomere-binding protein 1 [Nicotiana tabacum];; (*SWP) sp|O94432|YHKF_SCHPO (e_value=2e-35) Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=2 SV=1;; (*TAIR) AT3G13224.2 (e_value=3e-76) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4254848-4256621 FORWARD LENGTH=358;; (*ITAG) Solyc07g045240.2.1 (e_value=1e-103) genomic_reference:SL2.40ch07 gene_region:55694997-55697651 transcript_region:SL2.40ch07:55694997..55697651+ go_terms:GO:0008266 functional_description:"RNA-binding protein-like (AHRD V1 *--* Q8L779_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00012473g0007.1 protein AED:0.08 eAED:0.17 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|225452067|ref|XP_002280530.1| (e_value=4e-18) PREDICTED: uncharacterized protein LOC100256597 [Vitis vinifera];; (*TAIR) AT1G67050.1 (e_value=6e-12) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). | chr1:25028862-25029656 REVERSE LENGTH=264;; (*ITAG) Solyc02g063230.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:29870430-29871206 transcript_region:SL2.40ch02:29870430..29871206+ functional_description:"At1g67050 (Fragment) (AHRD V1 ***- B0FU30_ARATH)"; NbS00052588g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|225444627|ref|XP_002277540.1| (e_value=4e-22) PREDICTED: respiratory burst oxidase homolog protein E [Vitis vinifera];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=3e-12) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.1 (e_value=2e-13) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=926;; (*ITAG) Solyc07g042460.1.1 (e_value=1e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52919322-52925426 transcript_region:SL2.40ch07:52919322..52925426- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein E (AHRD V1 **** B2D0N7_HORVD); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00052588g0005.1 protein AED:0.22 eAED:0.24 QI:0|0.28|0.12|1|1|1|8|0|431; (*GB) gi|255550343|ref|XP_002516222.1| (e_value=6e-150) respiratory burst oxidase, putative [Ricinus communis];; (*SWP) sp|O81211|RBOHE_ARATH (e_value=9e-137) Respiratory burst oxidase homolog protein E OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=2;; (*TAIR) AT1G19230.2 (e_value=3e-138) | Symbols: | Riboflavin synthase-like superfamily protein | chr1:6644189-6649149 FORWARD LENGTH=934;; (*ITAG) Solyc05g025680.1.1 (e_value=3e-178) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:35767748-35770495 transcript_region:SL2.40ch05:35767748..35770495- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase protein B (AHRD V1 **** A1YBM1_MAIZE); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00001050g0001.1 protein AED:0.13 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|388522051|gb|AFK49087.1| (e_value=3e-60) unknown [Lotus japonicus];; (*SWP) sp|P40283|H2B11_ARATH (e_value=2e-61) Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5;; (*TAIR) AT5G59910.1 (e_value=1e-62) | Symbols: HTB4 | Histone superfamily protein | chr5:24127206-24127658 FORWARD LENGTH=150;; (*ITAG) Solyc11g007930.1.1 (e_value=4e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2163910-2164326 transcript_region:SL2.40ch11:2163910..2164326- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- D7KHV7_ARALY); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005634,GO:0003677 NbS00022880g0004.1 protein AED:0.06 eAED:0.07 QI:0|0|0|1|0|0|2|0|215; (*GB) gi|225441325|ref|XP_002276334.1| (e_value=4e-62) PREDICTED: probable calcium-binding protein CML35 [Vitis vinifera];; (*SWP) sp|Q9SS31|CML36_ARATH (e_value=2e-43) Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1;; (*TAIR) AT3G10190.1 (e_value=2e-44) | Symbols: | Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209;; (*ITAG) Solyc10g079420.1.1 (e_value=9e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60282482-60283099 transcript_region:SL2.40ch10:60282482..60283099+ go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6TKX0_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00002615g0010.1 protein AED:0.01 eAED:0.01 QI:27|1|1|1|0|0.5|2|193|165; (*GB) gi|255575863|ref|XP_002528829.1| (e_value=1e-66) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9QY93|DCTP1_MOUSE (e_value=4e-30) dCTP pyrophosphatase 1 OS=Mus musculus GN=Dctpp1 PE=1 SV=1;; (*TAIR) AT3G25400.1 (e_value=6e-53) | Symbols: | CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | chr3:9213236-9214144 FORWARD LENGTH=141;; (*ITAG) Solyc09g090300.2.1 (e_value=2e-74) genomic_reference:SL2.40ch09 gene_region:65177609-65179933 transcript_region:SL2.40ch09:65177609..65179933+ go_terms:GO:0047429 functional_description:"MazG nucleotide pyrophosphohydrolase (AHRD V1 ***- B1J275_PSEPW); contains Interpro domain(s) IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 "; GO:0047429 NbS00002615g0011.1 protein AED:0.04 eAED:0.04 QI:0|1|0.5|1|1|1|4|0|150; (*GB) gi|351727429|ref|NP_001238696.1| (e_value=5e-82) uncharacterized protein LOC100499964 [Glycine max];; (*SWP) sp|Q96JA3|PKHA8_HUMAN (e_value=7e-13) Pleckstrin homology domain-containing family A member 8 OS=Homo sapiens GN=PLEKHA8 PE=1 SV=3;; (*TAIR) AT2G33470.2 (e_value=8e-75) | Symbols: GLTP1 | glycolipid transfer protein 1 | chr2:14176599-14177950 REVERSE LENGTH=202;; (*ITAG) Solyc09g090310.1.1 (e_value=2e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65181090-65182929 transcript_region:SL2.40ch09:65181090..65182929+ go_terms:GO:0051861,GO:0017089 functional_description:"Glycolipid transfer protein domain-containing protein 1 (AHRD V1 **-* GLTD1_MOUSE); contains Interpro domain(s) IPR014830 Glycolipid transfer protein, GLTP "; GO:0051861,GO:0017089 NbS00002615g0012.1 protein AED:0.07 eAED:0.07 QI:122|1|0.8|1|1|0.8|5|0|776; (*GB) gi|225433189|ref|XP_002281630.1| (e_value=0.0) PREDICTED: kinesin-like protein KIF11-like [Vitis vinifera];; (*SWP) sp|Q14807|KIF22_HUMAN (e_value=6e-33) Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5;; (*TAIR) AT4G14330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8244228-8247286 FORWARD LENGTH=869;; (*ITAG) Solyc09g090320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65183225-65187280 transcript_region:SL2.40ch09:65183225..65187280- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- O23291_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00005917g0011.1 protein AED:0.43 eAED:0.50 QI:0|0|0|0.66|1|1|6|0|162 NbS00005917g0019.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|1|1|2|0|247; (*GB) gi|224084630|ref|XP_002307366.1| (e_value=6e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64260.1 (e_value=1e-70) | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703980-25704897 FORWARD LENGTH=305;; (*ITAG) Solyc04g074470.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58047154-58048083 transcript_region:SL2.40ch04:58047154..58048083+ functional_description:"Os06g0220000 protein (Fragment) (AHRD V1 ***- Q0DDJ2_ORYSJ); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00005917g0016.1 protein AED:0.13 eAED:0.13 QI:134|1|1|1|1|1|2|228|359; (*GB) gi|255545788|ref|XP_002513954.1| (e_value=1e-132) purine transporter, putative [Ricinus communis];; (*SWP) sp|Q9FZ95|PUP3_ARATH (e_value=4e-86) Purine permease 3 OS=Arabidopsis thaliana GN=PUP3 PE=2 SV=1;; (*TAIR) AT1G28220.1 (e_value=3e-87) | Symbols: ATPUP3, PUP3 | purine permease 3 | chr1:9860303-9861434 REVERSE LENGTH=351;; (*ITAG) Solyc12g057100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48542024-48543758 transcript_region:SL2.40ch12:48542024..48543758+ go_terms:GO:0016020,GO:0006364 functional_description:"Purine permease family protein (AHRD V1 **-- D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0016020,GO:0006364 NbS00051555g0002.1 protein AED:0.30 eAED:0.65 QI:0|0|0|0.5|1|1|2|0|75 NbS00051555g0004.1 protein AED:0.40 eAED:0.44 QI:0|0.91|0.84|1|0.83|0.92|13|0|307; (*GB) gi|192910838|gb|ACF06527.1| (e_value=3e-148) secretory carrier membrane protein [Elaeis guineensis];; (*SWP) sp|Q7F613|SCAM2_ORYSJ (e_value=1e-135) Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica GN=SCAMP2 PE=2 SV=1;; (*TAIR) AT1G61250.1 (e_value=7e-136) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588664 FORWARD LENGTH=289;; (*ITAG) Solyc10g009180.2.1 (e_value=5e-174) genomic_reference:SL2.40ch10 gene_region:3177983-3185483 transcript_region:SL2.40ch10:3177983..3185483+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00011360g0006.1 protein AED:0.14 eAED:0.14 QI:232|0.66|1|1|0.66|0.75|4|143|201; (*GB) gi|225458175|ref|XP_002281067.1| (e_value=1e-85) PREDICTED: transmembrane protein 136 [Vitis vinifera];; (*TAIR) AT1G35180.1 (e_value=2e-72) | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein | chr1:12877230-12878644 REVERSE LENGTH=231;; (*ITAG) Solyc04g080750.2.1 (e_value=2e-106) genomic_reference:SL2.40ch04 gene_region:62445224-62447040 transcript_region:SL2.40ch04:62445224..62447040+ go_terms:GO:0016021 functional_description:"Transmembrane protein 136 (AHRD V1 ***- B9EI42_MOUSE); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0016021 NbS00055051g0003.1 protein AED:0.40 eAED:0.47 QI:56|0.5|0.6|1|0|0|5|0|161 NbS00019729g0007.1 protein AED:0.22 eAED:0.22 QI:229|1|0.85|1|1|1|7|0|328; (*GB) gi|147807582|emb|CAN66319.1| (e_value=0.0) hypothetical protein VITISV_040623 [Vitis vinifera];; (*SWP) sp|Q9LZ98|AB20I_ARATH (e_value=3e-176) ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1;; (*TAIR) AT5G02270.1 (e_value=2e-177) | Symbols: ATNAP9, NAP9 | non-intrinsic ABC protein 9 | chr5:467269-469041 REVERSE LENGTH=328;; (*ITAG) Solyc01g100850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82520729-82524185 transcript_region:SL2.40ch01:82520729..82524185+ go_terms:GO:0017111,GO:0016887 functional_description:"ABC transporter ATP-binding protein (AHRD V1 ***- Q88ZT3_LACPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00019729g0011.1 protein AED:0.61 eAED:0.80 QI:61|0|0.33|1|0|0.33|3|0|44 NbS00006265g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|1|1|1|4|0|181; (*GB) gi|1546817|gb|AAB08428.1| (e_value=5e-87) patatin homolog [Nicotiana tabacum];; (*SWP) sp|Q3YJT0|PT2K4_SOLTU (e_value=3e-51) Patatin-2-Kuras 4 OS=Solanum tuberosum GN=pat2-k4 PE=2 SV=1;; (*TAIR) AT4G37050.1 (e_value=3e-30) | Symbols: PLP4, PLA V, AtPLAIVC | PATATIN-like protein 4 | chr4:17457261-17459642 REVERSE LENGTH=428;; (*ITAG) Solyc08g006850.2.1 (e_value=2e-39) genomic_reference:SL2.40ch08 gene_region:1388591-1394719 transcript_region:SL2.40ch08:1388591..1394719+ go_terms:GO:0045735,GO:0004620 functional_description:"Patatin-like phospholipase family protein (AHRD V1 **** Q2QNW3_ORYSJ); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0004620 NbS00018053g0003.1 protein AED:0.16 eAED:0.16 QI:123|1|1|1|1|1|5|363|333; (*GB) gi|356548272|ref|XP_003542527.1| (e_value=9e-51) PREDICTED: uncharacterized protein LOC547884 [Glycine max];; (*TAIR) AT5G03380.1 (e_value=5e-48) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:832400-834301 REVERSE LENGTH=392;; (*ITAG) Solyc10g086280.1.1 (e_value=6e-108) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64482821-64484140 transcript_region:SL2.40ch10:64482821..64484140- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q10RN8_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00044083g0003.1 protein AED:0.30 eAED:0.30 QI:171|1|1|1|1|1|6|339|212; (*GB) gi|225441601|ref|XP_002281697.1| (e_value=3e-140) PREDICTED: eukaryotic translation initiation factor 4E type 3 [Vitis vinifera];; (*SWP) sp|Q9FK59|IF4E3_ARATH (e_value=4e-116) Eukaryotic translation initiation factor 4E type 3 OS=Arabidopsis thaliana GN=At5g18110 PE=2 SV=1;; (*TAIR) AT5G18110.1 (e_value=3e-117) | Symbols: NCBP | novel cap-binding protein | chr5:5989105-5990588 REVERSE LENGTH=221;; (*ITAG) Solyc10g080660.1.1 (e_value=2e-143) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61208446-61211985 transcript_region:SL2.40ch10:61208446..61211985- go_terms:GO:0005737 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- A6XJR1_PIG); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0005737 NbS00024780g0009.1 protein AED:0.15 eAED:0.16 QI:0|0|0|1|1|1|2|0|515; (*GB) gi|225442898|ref|XP_002263979.1| (e_value=5e-151) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=2e-132) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=2e-133) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc03g117520.1.1 (e_value=9e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60711082-60712938 transcript_region:SL2.40ch03:60711082..60712938+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00024780g0012.1 protein AED:0.16 eAED:0.16 QI:277|0.9|0.90|1|0.7|0.81|11|408|479; (*GB) gi|357455291|ref|XP_003597926.1| (e_value=0.0) Formamidopyrimidine-DNA glycosylase [Medicago truncatula];; (*SWP) sp|Q03GC2|FPG_PEDPA (e_value=8e-30) Formamidopyrimidine-DNA glycosylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=mutM PE=3 SV=1;; (*TAIR) AT1G52500.2 (e_value=7e-157) | Symbols: FPG-1, ATFPG-1, ATMMH-1, MMH-1 | MUTM homolog-1 | chr1:19560043-19562855 FORWARD LENGTH=390;; (*ITAG) Solyc03g117510.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60702450-60707474 transcript_region:SL2.40ch03:60702450..60707474+ go_terms:GO:0019104 functional_description:"Formamidopyrimidine-DNA glycosylase (AHRD V1 **** C5JTH8_AJEDS); contains Interpro domain(s) IPR000191 DNA glycosylase/AP lyase "; GO:0019104 NbS00042392g0001.1 protein AED:0.26 eAED:0.26 QI:225|0.5|0.8|1|0|0.2|5|1047|209; (*GB) gi|255545192|ref|XP_002513657.1| (e_value=2e-57) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G25690.2 (e_value=9e-40) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:13090421-13090996 REVERSE LENGTH=191;; (*ITAG) Solyc06g036250.1.1 (e_value=3e-107) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:22420269-22420898 transcript_region:SL2.40ch06:22420269..22420898- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 BAC clone F6N7 (AHRD V1 ***- Q9LTG2_ARATH)"; GO:0005515 NbS00042392g0006.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|133; (*GB) gi|346306029|gb|AEO22189.1| (e_value=8e-38) ABCG subfamily transporter protein [Solanum tuberosum];; (*SWP) sp|Q8GU88|PDR7_ORYSJ (e_value=6e-36) Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1;; (*TAIR) AT1G15520.1 (e_value=4e-35) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc08g067610.2.1 (e_value=5e-37) genomic_reference:SL2.40ch08 gene_region:53826067-53832536 transcript_region:SL2.40ch08:53826067..53832536+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000110g0014.1 protein AED:0.06 eAED:0.22 QI:0|0.5|0.6|1|1|1|5|0|204; (*GB) gi|75207182|sp|Q9SQ57.1|PXG_SESIN (e_value=6e-86) RecName: Full=Peroxygenase; AltName: Full=Caleosin; Short=SiCLO;; (*SWP) sp|Q9SQ57|PXG_SESIN (e_value=2e-87) Peroxygenase OS=Sesamum indicum GN=SOP1 PE=1 SV=1;; (*TAIR) AT4G26740.1 (e_value=3e-77) | Symbols: ATS1, CLO1, ATPXG1 | seed gene 1 | chr4:13473791-13475278 REVERSE LENGTH=245;; (*ITAG) Solyc09g090590.2.1 (e_value=4e-95) genomic_reference:SL2.40ch09 gene_region:65415210-65417059 transcript_region:SL2.40ch09:65415210..65417059+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **** A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbS00000110g0001.1 protein AED:0.26 eAED:0.26 QI:241|1|0.5|1|1|1|2|0|120; (*GB) gi|164449260|gb|ABY56089.1| (e_value=3e-58) proton gradient regulation 5 [Cucumis melo];; (*SWP) sp|Q9SL05|PGR5_ARATH (e_value=6e-51) Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana GN=PGR5 PE=1 SV=1;; (*TAIR) AT2G05620.1 (e_value=5e-52) | Symbols: PGR5 | proton gradient regulation 5 | chr2:2081204-2081687 REVERSE LENGTH=133;; (*ITAG) Solyc09g090570.2.1 (e_value=1e-67) genomic_reference:SL2.40ch09 gene_region:65408350-65411214 transcript_region:SL2.40ch09:65408350..65411214+ go_terms:GO:0009055 functional_description:"Proton gradient regulation 5 (AHRD V1 ***- B0F831_CUCSA)"; GO:0009055 NbS00000110g0010.1 protein AED:0.04 eAED:0.04 QI:175|1|1|1|1|1|3|196|257; (*GB) gi|224110630|ref|XP_002315584.1| (e_value=2e-124) predicted protein [Populus trichocarpa];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=5e-61) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT1G04040.1 (e_value=4e-102) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr1:1042564-1043819 REVERSE LENGTH=271;; (*ITAG) Solyc09g090600.2.1 (e_value=2e-167) genomic_reference:SL2.40ch09 gene_region:65417313-65419033 transcript_region:SL2.40ch09:65417313..65419033- go_terms:GO:0003993 functional_description:"Acid phosphatase-like protein (AHRD V1 **-- Q9M0F4_ARATH); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00000110g0009.1 protein AED:0.26 eAED:0.26 QI:135|1|0.8|1|1|1|5|0|199; (*GB) gi|51557995|gb|AAU06579.1| (e_value=1e-139) eukaryotic initiation factor iso4E [Nicotiana tabacum];; (*SWP) sp|O81482|IF4E2_MAIZE (e_value=8e-100) Eukaryotic translation initiation factor 4E-2 OS=Zea mays PE=2 SV=1;; (*TAIR) AT5G35620.1 (e_value=2e-86) | Symbols: LSP1, EIF(ISO)4E, LSP, EIF4E2, eIFiso4E | Eukaryotic initiation factor 4E protein | chr5:13824946-13826331 REVERSE LENGTH=198;; (*ITAG) Solyc09g090580.2.1 (e_value=2e-133) genomic_reference:SL2.40ch09 gene_region:65410646-65414029 transcript_region:SL2.40ch09:65410646..65414029- go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E-2 (AHRD V1 ***- B6UD29_MAIZE); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00020177g0001.1 protein AED:0.21 eAED:0.22 QI:101|0|0.5|1|0|0.5|2|0|145; (*GB) gi|10798752|dbj|BAB16428.1| (e_value=6e-34) P-rich protein EIG-I30 [Nicotiana tabacum];; (*SWP) sp|P14009|14KD_DAUCA (e_value=8e-21) 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1;; (*TAIR) AT2G45180.1 (e_value=2e-24) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr2:18626377-18626781 FORWARD LENGTH=134;; (*ITAG) Solyc08g079190.1.1 (e_value=8e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59986130-59986546 transcript_region:SL2.40ch08:59986130..59986546- go_terms:GO:0008289 functional_description:"Cortical cell-delineating protein (AHRD V1 *--- B6T836_MAIZE); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0008289 NbS00006849g0004.1 protein AED:0.14 eAED:0.14 QI:261|1|1|1|0.81|0.66|12|318|339; (*GB) gi|225436624|ref|XP_002280005.1| (e_value=0.0) PREDICTED: minor histocompatibility antigen H13 [Vitis vinifera];; (*SWP) sp|Q8TCT9|HM13_HUMAN (e_value=4e-75) Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1;; (*TAIR) AT2G03120.1 (e_value=0.0) | Symbols: ATSPP, SPP | signal peptide peptidase | chr2:937554-940083 FORWARD LENGTH=344;; (*ITAG) Solyc11g064790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47037280-47042310 transcript_region:SL2.40ch11:47037280..47042310- go_terms:GO:0016021 functional_description:"Signal peptide peptidase family protein (AHRD V1 ***- D7LQE4_ARALY); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0016021 NbS00060262g0001.1 protein AED:0.36 eAED:0.36 QI:499|1|0.5|1|0|0|2|0|301; (*GB) gi|225460189|ref|XP_002277079.1| (e_value=6e-106) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q8BMJ2|SYLC_MOUSE (e_value=2e-73) Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2;; (*TAIR) AT1G09620.1 (e_value=1e-100) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g069140.1.1 (e_value=4e-129) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33670252-33673477 transcript_region:SL2.40ch02:33670252..33673477+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q0IF77_AEDAE); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00060262g0003.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|312; (*GB) gi|224134360|ref|XP_002321800.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15570.1 (e_value=1e-26) | Symbols: | Bromodomain transcription factor | chr5:5066851-5067996 FORWARD LENGTH=381;; (*ITAG) Solyc02g069170.1.1 (e_value=3e-86) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33691587-33692429 transcript_region:SL2.40ch02:33691587..33692429- functional_description:"Os12g0574800 protein (Fragment) (AHRD V1 *-*- Q0IME3_ORYSJ); contains Interpro domain(s) IPR006565 Bromodomain transcription factor "; NbS00011771g0010.1 protein AED:0.22 eAED:0.22 QI:0|1|0.25|1|1|1|4|265|525; (*GB) gi|16588566|gb|AAL26842.1|AF313452_1 (e_value=3e-150) thermal hysteresis protein STHP-64 [Solanum dulcamara];; (*SWP) sp|Q93WV0|WRK20_ARATH (e_value=5e-65) Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1;; (*TAIR) AT2G04880.2 (e_value=6e-69) | Symbols: ZAP1, ATWRKY1, WRKY1 | zinc-dependent activator protein-1 | chr2:1718557-1720219 FORWARD LENGTH=463;; (*ITAG) Solyc07g047960.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56499981-56504055 transcript_region:SL2.40ch07:56499981..56504055- go_terms:GO:0003700 functional_description:"WRKY transcription factor 2 (AHRD V1 **** C9DHZ1_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700 NbS00011771g0013.1 protein AED:0.31 eAED:0.34 QI:151|0.8|0.81|1|0.4|0.54|11|331|413; (*GB) gi|359472868|ref|XP_002284414.2| (e_value=1e-141) PREDICTED: SEC12-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q39221|STLP2_ARATH (e_value=7e-100) SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4;; (*TAIR) AT5G50650.1 (e_value=2e-102) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20610212-20612061 FORWARD LENGTH=383;; (*ITAG) Solyc07g047970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56506647-56514306 transcript_region:SL2.40ch07:56506647..56514306- go_terms:GO:0000166 functional_description:"Prolactin regulatory element-binding protein (AHRD V1 *--* C0H9F8_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00011771g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|516; (*GB) gi|255586447|ref|XP_002533868.1| (e_value=0.0) protein with unknown function [Ricinus communis];; (*SWP) sp|Q96DF8|DGC14_HUMAN (e_value=2e-38) Protein DGCR14 OS=Homo sapiens GN=DGCR14 PE=1 SV=1;; (*TAIR) AT3G07790.1 (e_value=0.0) | Symbols: | DGCR14-related | chr3:2487491-2489017 FORWARD LENGTH=508;; (*ITAG) Solyc07g047980.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56516157-56517689 transcript_region:SL2.40ch07:56516157..56517689+ go_terms:GO:0005515,GO:0004757 functional_description:"Es2 (Fragment) (AHRD V1 *--- A9YJX0_DROME); contains Interpro domain(s) IPR019148 Nuclear protein DGCR14 "; GO:0005515,GO:0004757 NbS00008104g0001.1 protein AED:0.00 eAED:0.27 QI:0|1|0.75|1|0.33|0.5|4|3105|209; (*GB) gi|255660854|gb|ACU25596.1| (e_value=3e-18) pentatricopeptide repeat-containing protein [Stachytarpheta dichotoma];; (*ITAG) Solyc11g011410.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4479440-4480882 transcript_region:SL2.40ch11:4479440..4480882+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJT0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00051385g0003.1 protein AED:0.07 eAED:0.07 QI:455|0.85|0.87|0.87|1|1|8|0|969; (*GB) gi|225438408|ref|XP_002275766.1| (e_value=7e-98) PREDICTED: auxilin-related protein 2-like [Vitis vinifera];; (*SWP) sp|Q0WQ57|AUXI2_ARATH (e_value=6e-82) Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1;; (*TAIR) AT4G12770.1 (e_value=4e-83) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:7506736-7511408 REVERSE LENGTH=891;; (*ITAG) Solyc06g082840.2.1 (e_value=8e-166) genomic_reference:SL2.40ch06 gene_region:44788999-44795603 transcript_region:SL2.40ch06:44788999..44795603- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- Q4WUT8_ASPFU); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00012575g0015.1 protein AED:0.14 eAED:0.14 QI:0|0.66|0.42|0.85|0.66|0.71|7|310|391; (*GB) gi|224112569|ref|XP_002332745.1| (e_value=4e-160) predicted protein [Populus trichocarpa];; (*SWP) sp|O48905|MDHC_MEDSA (e_value=6e-157) Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1;; (*TAIR) AT1G04410.1 (e_value=2e-150) | Symbols: | Lactate/malate dehydrogenase family protein | chr1:1189418-1191267 REVERSE LENGTH=332;; (*ITAG) Solyc09g090140.2.1 (e_value=7e-160) genomic_reference:SL2.40ch09 gene_region:65031288-65034684 transcript_region:SL2.40ch09:65031288..65034684- go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q2PYY8_SOLTU); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00012575g0001.1 protein AED:0.08 eAED:0.39 QI:0|0.33|0.25|1|1|1|4|0|1956; (*GB) gi|297736092|emb|CBI24130.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|A4GSN8|NUA_ARATH (e_value=0.0) Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1;; (*TAIR) AT1G79280.1 (e_value=0.0) | Symbols: NUA, AtTPR | nuclear pore anchor | chr1:29819176-29832809 REVERSE LENGTH=2093;; (*ITAG) Solyc06g053570.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32887882-32891127 transcript_region:SL2.40ch06:32887882..32891127+ functional_description:"Tpr protein (Fragment) (AHRD V1 ***- A4QN67_DANRE)"; NbS00012575g0013.1 protein AED:0.16 eAED:0.16 QI:261|1|0.83|1|0.8|1|6|0|285; (*GB) gi|255585554|ref|XP_002533467.1| (e_value=2e-157) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|P0A9T5|TAS_SHIFL (e_value=7e-68) Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1;; (*TAIR) AT1G04420.1 (e_value=7e-144) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc06g053600.2.1 (e_value=2e-172) genomic_reference:SL2.40ch06 gene_region:32897410-32909873 transcript_region:SL2.40ch06:32897410..32909873- go_terms:GO:0050236 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 ***- Q10GW4_ORYSJ); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0050236 NbS00029339g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0|1|1|0.66|3|0|179; (*GB) gi|351724709|ref|NP_001236299.1| (e_value=6e-90) G/HBF-1 protein [Glycine max];; (*SWP) sp|Q99090|CPRF2_PETCR (e_value=4e-63) Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2;; (*TAIR) AT5G28770.1 (e_value=3e-28) | Symbols: BZO2H3, AtbZIP63 | bZIP transcription factor family protein | chr5:10796648-10798147 REVERSE LENGTH=307;; (*ITAG) Solyc01g097330.2.1 (e_value=5e-88) genomic_reference:SL2.40ch01 gene_region:79990166-79995989 transcript_region:SL2.40ch01:79990166..79995989+ go_terms:GO:0046982,GO:0003677 functional_description:"Opaque 2 (Fragment) (AHRD V1 *--- Q84YB2_ZEAPE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0003677 NbS00006411g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|82400146|gb|ABB72812.1| (e_value=5e-61) histone H2B-like protein [Solanum tuberosum];; (*SWP) sp|Q1S9I9|H2B1_MEDTR (e_value=3e-62) Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3;; (*TAIR) AT1G07790.1 (e_value=5e-62) | Symbols: HTB1 | Histone superfamily protein | chr1:2413049-2413495 FORWARD LENGTH=148;; (*ITAG) Solyc06g075800.1.1 (e_value=8e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:43493532-43493972 transcript_region:SL2.40ch06:43493532..43493972+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone H2B (AHRD V1 ***- Q2XPW1_SOLTU); contains Interpro domain(s) IPR000558 Histone H2B "; GO:0005515,GO:0003677 NbS00006411g0007.1 protein AED:0.24 eAED:0.27 QI:0|0.4|0.36|0.90|0.9|0.90|11|289|870; (*GB) gi|255586963|ref|XP_002534079.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04460.3 (e_value=1e-117) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263695 FORWARD LENGTH=863;; (*ITAG) Solyc11g007910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00022022g0002.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.5|1|1|2|0|84; (*GB) gi|321149997|gb|ADW66146.1| (e_value=4e-38) RING-H2 zinc finger protein [Solanum nigrum];; (*TAIR) AT2G04240.2 (e_value=3e-17) | Symbols: XERICO | RING/U-box superfamily protein | chr2:1461816-1462304 REVERSE LENGTH=162;; (*ITAG) Solyc07g045190.1.1 (e_value=7e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55644301-55644666 transcript_region:SL2.40ch07:55644301..55644666+ go_terms:GO:0005515 functional_description:"RING-H2 finger protein (AHRD V1 ***- Q30D22_PONTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515 NbS00056804g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.5|0.4|0.6|1|1|5|0|216; (*GB) gi|118488828|gb|ABK96224.1| (e_value=1e-78) unknown [Populus trichocarpa x Populus deltoides];; (*SWP) sp|P16273|PRPX_HORVU (e_value=3e-58) Pathogen-related protein OS=Hordeum vulgare PE=2 SV=2;; (*TAIR) AT1G78780.2 (e_value=1e-61) | Symbols: | pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=238;; (*ITAG) Solyc04g064870.2.1 (e_value=3e-106) genomic_reference:SL2.40ch04 gene_region:55151560-55153322 transcript_region:SL2.40ch04:55151560..55153322+ functional_description:"Pathogenesis-related protein-like protein (AHRD V1 ***- Q8L9B0_ARATH)"; NbS00056804g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|147768317|emb|CAN78123.1| (e_value=3e-53) hypothetical protein VITISV_041548 [Vitis vinifera];; (*TAIR) AT1G28280.2 (e_value=6e-48) | Symbols: | VQ motif-containing protein | chr1:9886297-9887395 REVERSE LENGTH=243;; (*ITAG) Solyc02g078030.1.1 (e_value=7e-96) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37420947-37421738 transcript_region:SL2.40ch02:37420947..37421738- functional_description:"DNA-binding WRKY VQ (AHRD V1 ***- Q2HTS9_MEDTR); contains Interpro domain(s) IPR008889 VQ "; NbS00056804g0006.1 protein AED:0.07 eAED:0.07 QI:0|0|0|1|1|1|2|0|199; (*ITAG) Solyc03g044360.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00014920g0008.1 protein AED:0.19 eAED:0.19 QI:0|0.66|0.68|1|0.85|0.86|22|0|815; (*GB) gi|6633814|gb|AAF19673.1|AC009519_7 (e_value=0.0) F1N19.11 [Arabidopsis thaliana];; (*SWP) sp|Q8H0V6|AB3F_ARATH (e_value=0.0) ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1;; (*TAIR) AT1G64550.1 (e_value=0.0) | Symbols: ATGCN3, GCN3 | general control non-repressible 3 | chr1:23968850-23973369 FORWARD LENGTH=715;; (*ITAG) Solyc08g082850.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62676545-62684828 transcript_region:SL2.40ch08:62676545..62684828+ go_terms:GO:0042626 functional_description:"Uncharacterized ABC transporter ATP-binding protein C29A3.09c (AHRD V1 ***- YB89_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00014920g0009.1 protein AED:0.23 eAED:0.26 QI:0|0.54|0.5|1|0.18|0.25|12|972|231; (*GB) gi|283131196|dbj|BAI63261.1| (e_value=3e-106) trehalase [Nicotiana tabacum];; (*SWP) sp|Q9SU50|TRE1_ARATH (e_value=1e-44) Trehalase OS=Arabidopsis thaliana GN=TRE1 PE=2 SV=1;; (*TAIR) AT4G24040.1 (e_value=7e-46) | Symbols: ATTRE1, TRE1 | trehalase 1 | chr4:12488242-12491060 FORWARD LENGTH=626;; (*ITAG) Solyc08g082860.2.1 (e_value=2e-85) genomic_reference:SL2.40ch08 gene_region:62687027-62692382 transcript_region:SL2.40ch08:62687027..62692382+ go_terms:GO:0004555 functional_description:"Alpha alpha-trehalase (AHRD V1 **** Q16V80_AEDAE); contains Interpro domain(s) IPR001661 Glycoside hydrolase, family 37 "; GO:0004555 NbS00020201g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|109; (*GB) gi|225430103|ref|XP_002284608.1| (e_value=4e-18) PREDICTED: uncharacterized protein LOC100262887 isoform 2 [Vitis vinifera];; (*TAIR) AT4G32610.1 (e_value=1e-15) | Symbols: | copper ion binding | chr4:15728376-15729897 REVERSE LENGTH=315;; (*ITAG) Solyc05g018490.2.1 (e_value=8e-36) genomic_reference:SL2.40ch05 gene_region:22005205-22009758 transcript_region:SL2.40ch05:22005205..22009758- functional_description:"Early fruit mRNA (AHRD V1 *--- B6TAC1_MAIZE)"; NbS00021180g0005.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.66|1|0|0.66|3|717|377; (*GB) gi|359474503|ref|XP_002279644.2| (e_value=1e-70) PREDICTED: uncharacterized protein LOC100243688 [Vitis vinifera];; (*TAIR) AT1G32730.1 (e_value=9e-55) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF702 (InterPro:IPR007818); Has 120 Blast hits to 118 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 63; Fungi - 4; Plants - 33; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:11841077-11842956 FORWARD LENGTH=327;; (*ITAG) Solyc08g077450.2.1 (e_value=1e-132) genomic_reference:SL2.40ch08 gene_region:58516390-58524220 transcript_region:SL2.40ch08:58516390..58524220+ functional_description:"Electron carrier/ iron ion binding protein (AHRD V1 ***- D7KIB9_ARALY)"; NbS00032629g0014.1 protein AED:0.05 eAED:0.11 QI:0|0.75|0.8|1|0.25|0.4|5|129|388; (*GB) gi|147852830|emb|CAN79520.1| (e_value=7e-104) hypothetical protein VITISV_034626 [Vitis vinifera];; (*SWP) sp|Q9SMV7|MSH7_ARATH (e_value=9e-85) DNA mismatch repair protein Msh6-2 OS=Arabidopsis thaliana GN=MSH6-2 PE=2 SV=1;; (*TAIR) AT3G24495.1 (e_value=7e-86) | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109;; (*ITAG) Solyc07g018340.2.1 (e_value=2e-155) genomic_reference:SL2.40ch07 gene_region:10347622-10358521 transcript_region:SL2.40ch07:10347622..10358521+ go_terms:GO:0006298 functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-*- B2WBA4_PYRTR); contains Interpro domain(s) IPR016151 DNA mismatch repair protein MutS, N-terminal "; GO:0006298 NbS00032629g0012.1 protein AED:0.07 eAED:0.07 QI:156|1|1|1|0.71|0.75|8|207|519; (*GB) gi|224126071|ref|XP_002329654.1| (e_value=2e-145) AP2 domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6PQQ3|AIL5_ARATH (e_value=2e-124) AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2;; (*TAIR) AT5G57390.1 (e_value=1e-125) | Symbols: AIL5, CHO1, EMK | AINTEGUMENTA-like 5 | chr5:23253459-23256437 REVERSE LENGTH=558;; (*ITAG) Solyc07g018290.2.1 (e_value=3e-176) genomic_reference:SL2.40ch07 gene_region:10023972-10028265 transcript_region:SL2.40ch07:10023972..10028265- go_terms:GO:0043565 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0043565 NbS00032629g0013.1 protein AED:0.20 eAED:0.20 QI:100|1|1|1|1|1|10|419|272; (*GB) gi|359485014|ref|XP_002268721.2| (e_value=1e-104) PREDICTED: replication protein A 32 kDa subunit [Vitis vinifera];; (*SWP) sp|Q62193|RFA2_MOUSE (e_value=6e-23) Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1 SV=1;; (*TAIR) AT2G24490.2 (e_value=2e-75) | Symbols: RPA2, ATRPA2, ROR1, ATRPA32A, RPA32A | replicon protein A2 | chr2:10398651-10400416 REVERSE LENGTH=279;; (*ITAG) Solyc07g018300.2.1 (e_value=1e-170) genomic_reference:SL2.40ch07 gene_region:10037245-10042545 transcript_region:SL2.40ch07:10037245..10042545- go_terms:GO:0003697,GO:0047485 functional_description:"Single-stranded DNA binding protein p30 subunit (AHRD V1 **** C5JUU5_AJEDS); contains Interpro domain(s) IPR014646 Replication protein A, subunit RPA32 "; GO:0003697,GO:0047485 NbS00022758g0009.1 protein AED:0.07 eAED:0.07 QI:90|1|1|1|0.5|0.33|3|288|162; (*GB) gi|82734828|gb|ABB89735.1| (e_value=6e-93) ERD15 [Capsicum annuum];; (*SWP) sp|Q94AR4|CID2_ARATH (e_value=3e-16) Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1;; (*TAIR) AT2G41430.5 (e_value=2e-34) | Symbols: ERD15 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163;; (*ITAG) Solyc04g017690.2.1 (e_value=2e-96) genomic_reference:SL2.40ch04 gene_region:7761810-7762863 transcript_region:SL2.40ch04:7761810..7762863- go_terms:GO:0005515 functional_description:"Early response to dehydration 15-like protein (Fragment) (AHRD V1 *--- Q5MEE1_PSEMZ); contains Interpro domain(s) IPR009818 Ataxin-2, C-terminal "; GO:0005515 NbS00022758g0008.1 protein AED:0.13 eAED:0.13 QI:241|1|1|1|0.87|0.88|9|338|735; (*GB) gi|225441337|ref|XP_002274541.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100260688 [Vitis vinifera];; (*SWP) sp|O14357|GPI1_SCHPO (e_value=2e-17) N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein gpi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi1 PE=2 SV=1;; (*TAIR) AT3G57170.1 (e_value=2e-155) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560;; (*ITAG) Solyc04g017700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:7768414-7774996 transcript_region:SL2.40ch04:7768414..7774996- go_terms:GO:0016021 functional_description:"N-acetylglucosaminyl transferase component Gpi1 (AHRD V1 *--- C5FLP9_NANOT); contains Interpro domain(s) IPR007720 N-acetylglucosaminyl transferase component "; GO:0016021 NbS00023163g0010.1 protein AED:0.30 eAED:0.30 QI:0|1|0.83|1|0.8|0.5|6|477|224; (*GB) gi|297848500|ref|XP_002892131.1| (e_value=6e-45) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P0C8Z0|Y8359_ORYSI (e_value=1e-44) Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2;; (*TAIR) AT4G02450.2 (e_value=3e-39) | Symbols: | HSP20-like chaperones superfamily protein | chr4:1073987-1075765 REVERSE LENGTH=240;; (*ITAG) Solyc09g075010.2.1 (e_value=8e-62) genomic_reference:SL2.40ch09 gene_region:62288817-62293083 transcript_region:SL2.40ch09:62288817..62293083- functional_description:"Prostaglandin E synthase 3 (AHRD V1 *--- B4FLE3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00023163g0007.1 protein AED:0.19 eAED:0.20 QI:0|0.33|0|1|0|0|4|0|409; (*GB) gi|215400624|gb|ACJ66297.1| (e_value=1e-124) phenylalanine ammonia-lyase 4 [Nicotiana tabacum];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=8e-126) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=1e-112) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc10g086180.1.1 (e_value=3e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64422867-64426103 transcript_region:SL2.40ch10:64422867..64426103+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- D2CFQ1_9SOLA); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00058362g0001.1 protein AED:0.17 eAED:0.17 QI:68|1|0.5|1|1|1|2|0|488; (*GB) gi|113205181|gb|AAT40530.2| (e_value=0.0) zinc finger family protein, putative [Solanum demissum];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=6e-13) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT5G60250.1 (e_value=1e-127) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655;; (*ITAG) Solyc06g005000.2.1 (e_value=6e-140) genomic_reference:SL2.40ch06 gene_region:3688-7998 transcript_region:SL2.40ch06:3688..7998+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00017419g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.44|1|0.75|0.77|9|0|769; (*GB) gi|225425842|ref|XP_002265505.1| (e_value=0.0) PREDICTED: lipoxygenase 6, choloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAG3|LOX6_ARATH (e_value=0.0) Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1;; (*TAIR) AT1G67560.1 (e_value=0.0) | Symbols: LOX6 | PLAT/LH2 domain-containing lipoxygenase family protein | chr1:25319926-25324117 FORWARD LENGTH=917;; (*ITAG) Solyc05g014790.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:8966270-8971035 transcript_region:SL2.40ch05:8966270..8971035- go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** B9RMJ4_RICCO); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00038836g0004.1 protein AED:0.22 eAED:0.22 QI:0|1|0.9|1|0.88|1|10|0|474; (*GB) gi|304650830|gb|ADM47437.1| (e_value=0.0) ornithine aminotransferase [Nicotiana tabacum];; (*SWP) sp|Q54JP5|OAT_DICDI (e_value=3e-172) Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1;; (*TAIR) AT5G46180.1 (e_value=0.0) | Symbols: DELTA-OAT | ornithine-delta-aminotransferase | chr5:18718766-18721271 REVERSE LENGTH=475;; (*ITAG) Solyc08g048450.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:40074084-40085852 transcript_region:SL2.40ch08:40074084..40085852- go_terms:GO:0004587 functional_description:"Ornithine-oxo-acid transaminase (AHRD V1 **** A8CF49_BRACM); contains Interpro domain(s) IPR010164 Ornithine aminotransferase "; GO:0004587 NbS00059365g0008.1 protein AED:0.28 eAED:0.28 QI:115|1|1|1|0.53|0.78|14|421|567; (*GB) gi|225431027|ref|XP_002273357.1| (e_value=0.0) PREDICTED: ALBINO3-like protein 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q0WUC5|ALB33_ARATH (e_value=5e-154) ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1;; (*TAIR) AT3G44370.1 (e_value=4e-155) | Symbols: | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain | chr3:16030515-16035147 REVERSE LENGTH=566;; (*ITAG) Solyc11g013070.1.1 (e_value=8e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5919368-5932080 transcript_region:SL2.40ch11:5919368..5932080+ go_terms:GO:0005488,GO:0016021 functional_description:"Inner membrane protein OXA1L mitochondrial (AHRD V1 *-*- C1BK04_OSMMO); contains Interpro domain(s) IPR001708 Membrane insertion protein, OxaA/YidC "; GO:0005488,GO:0016021 NbS00059365g0009.1 protein AED:0.26 eAED:0.79 QI:0|0|0|1|0|0|2|0|84 NbS00000506g0105.1 protein AED:0.18 eAED:0.18 QI:0|0.83|0.57|1|0.5|0.57|7|249|454 NbS00013127g0018.1 protein AED:0.16 eAED:0.16 QI:402|0.8|0.66|1|0.6|0.83|6|0|165; (*GB) gi|224072242|ref|XP_002303669.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g082710.2.1 (e_value=8e-69) genomic_reference:SL2.40ch08 gene_region:62575845-62579735 transcript_region:SL2.40ch08:62575845..62579735+ functional_description:"Protein ABIL1 (AHRD V1 **-- B6TQN2_MAIZE)"; NbS00013127g0025.1 protein AED:0.36 eAED:0.36 QI:0|1|0.71|1|0.66|0.71|7|0|200; (*GB) gi|255576105|ref|XP_002528947.1| (e_value=7e-78) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G04960.1 (e_value=9e-57) | Symbols: | Protein of unknown function (DUF1664) | chr1:1408021-1410673 REVERSE LENGTH=317;; (*ITAG) Solyc08g082730.2.1 (e_value=4e-123) genomic_reference:SL2.40ch08 gene_region:62591302-62596193 transcript_region:SL2.40ch08:62591302..62596193+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00013127g0023.1 protein AED:0.37 eAED:0.42 QI:0|0.2|0.16|0.66|0.8|0.83|6|0|243; (*GB) gi|113196591|gb|ABI31652.1| (e_value=2e-131) 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis];; (*SWP) sp|Q9SGW3|RP12A_ARATH (e_value=2e-124) 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1;; (*TAIR) AT1G64520.1 (e_value=2e-125) | Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267;; (*ITAG) Solyc08g082700.2.1 (e_value=1e-142) genomic_reference:SL2.40ch08 gene_region:62568517-62573377 transcript_region:SL2.40ch08:62568517..62573377+ go_terms:GO:0005515,GO:0004175 functional_description:"26S proteasome non-ATPase regulatory subunit 8 (AHRD V1 ***- B4FCY9_MAIZE); contains Interpro domain(s) IPR006746 26S proteasome non-ATPase regulatory subunit Rpn12 "; GO:0005515,GO:0004175 NbS00013127g0027.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.25|0.66|0.75|4|0|106; (*GB) gi|225447201|ref|XP_002277295.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100261969 [Vitis vinifera];; (*TAIR) AT1G04960.1 (e_value=2e-15) | Symbols: | Protein of unknown function (DUF1664) | chr1:1408021-1410673 REVERSE LENGTH=317;; (*ITAG) Solyc08g082730.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:62591302-62596193 transcript_region:SL2.40ch08:62591302..62596193+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00013127g0026.1 protein AED:0.46 eAED:0.79 QI:0|0|0|1|0|0.5|2|0|59 NbS00013127g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|255555639|ref|XP_002518855.1| (e_value=5e-22) structural constituent of ribosome, putative [Ricinus communis];; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=3e-21) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1;; (*TAIR) AT1G64510.1 (e_value=3e-22) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954993-23956205 REVERSE LENGTH=207;; (*ITAG) Solyc08g082690.2.1 (e_value=6e-35) genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00013127g0028.1 protein AED:0.14 eAED:0.14 QI:200|1|1|1|0.5|0.53|15|750|433; (*GB) gi|224074267|ref|XP_002304329.1| (e_value=1e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT4G10890.1 (e_value=3e-25) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6688833-6692937 FORWARD LENGTH=527;; (*ITAG) Solyc08g082720.2.1 (e_value=9e-167) genomic_reference:SL2.40ch08 gene_region:62580096-62589996 transcript_region:SL2.40ch08:62580096..62589996- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018838 Protein of unknown function DUF2439 "; NbS00013127g0022.1 protein AED:0.21 eAED:0.21 QI:142|1|1|1|1|1|3|278|135; (*GB) gi|297736791|emb|CBI25992.3| (e_value=1e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|P49964|SRP19_ORYSJ (e_value=3e-55) Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1;; (*TAIR) AT1G48160.1 (e_value=2e-54) | Symbols: | signal recognition particle 19 kDa protein, putative / SRP19, putative | chr1:17786779-17788286 REVERSE LENGTH=145;; (*ITAG) Solyc08g082740.2.1 (e_value=3e-77) genomic_reference:SL2.40ch08 gene_region:62596504-62603237 transcript_region:SL2.40ch08:62596504..62603237- go_terms:GO:0048500 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1C4T3_RANCA); contains Interpro domain(s) IPR002778 Signal recognition particle, SRP19 subunit "; GO:0048500 NbS00013127g0020.1 protein AED:0.51 eAED:0.51 QI:0|1|0|1|1|1|2|0|89; (*ITAG) Solyc08g082720.2.1 (e_value=1e-32) genomic_reference:SL2.40ch08 gene_region:62580096-62589996 transcript_region:SL2.40ch08:62580096..62589996- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018838 Protein of unknown function DUF2439 "; NbS00020358g0006.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0.5|2|0|159 NbS00020358g0009.1 protein AED:0.39 eAED:0.51 QI:42|0|0|1|0|0|2|0|56 NbS00005040g0005.1 protein AED:0.27 eAED:0.28 QI:0|0|0|0.66|0|0|3|0|246; (*GB) gi|47824946|gb|AAT38720.1| (e_value=6e-28) Putative F-Box protein, identical [Solanum demissum];; (*TAIR) AT4G12560.2 (e_value=4e-12) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc09g091710.1.1 (e_value=5e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66293917-66295125 transcript_region:SL2.40ch09:66293917..66295125- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00005040g0006.1 protein AED:0.43 eAED:0.63 QI:0|0|0|1|0|0|2|0|68 NbS00057914g0002.1 protein AED:0.15 eAED:0.15 QI:0|0|0.5|1|0|0.5|2|387|559; (*GB) gi|225463424|ref|XP_002272240.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g14730-like [Vitis vinifera];; (*SWP) sp|Q9LUC2|PP231_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1;; (*TAIR) AT3G14730.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:4949385-4951346 REVERSE LENGTH=653;; (*ITAG) Solyc07g008480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3388127-3389659 transcript_region:SL2.40ch07:3388127..3389659- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L368_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00057914g0013.1 protein AED:0.28 eAED:0.28 QI:19|1|1|1|1|1|6|378|468; (*GB) gi|225445949|ref|XP_002264417.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis vinifera];; (*SWP) sp|P57722|PCBP3_MOUSE (e_value=6e-18) Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3;; (*TAIR) AT4G26000.1 (e_value=5e-154) | Symbols: PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH=495;; (*ITAG) Solyc07g008490.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3392921-3399097 transcript_region:SL2.40ch07:3392921..3399097- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6TJ76_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00057914g0012.1 protein AED:0.43 eAED:0.56 QI:0|0.5|0.33|1|0.5|0.33|3|0|114; (*GB) gi|388499576|gb|AFK37854.1| (e_value=3e-50) unknown [Lotus japonicus];; (*SWP) sp|P81748|MIFH_TRITR (e_value=1e-15) Macrophage migration inhibitory factor homolog OS=Trichuris trichiura PE=1 SV=2;; (*TAIR) AT5G57170.2 (e_value=3e-51) | Symbols: | Tautomerase/MIF superfamily protein | chr5:23162426-23163140 REVERSE LENGTH=116;; (*ITAG) Solyc07g008470.2.1 (e_value=3e-54) genomic_reference:SL2.40ch07 gene_region:3375701-3379146 transcript_region:SL2.40ch07:3375701..3379146- go_terms:GO:0004167 functional_description:"Macrophage migration inhibitory factor family protein (AHRD V1 ***- D7MMS4_ARALY); contains Interpro domain(s) IPR001398 Macrophage migration inhibitory factor "; GO:0004167 NbS00006513g0007.1 protein AED:0.26 eAED:0.26 QI:0|0.73|0.56|1|0.53|0.62|16|0|703; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G22620.2 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=597;; (*ITAG) Solyc11g011310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4355386-4362151 transcript_region:SL2.40ch11:4355386..4362151+ go_terms:GO:0030246 functional_description:"Rhamnogalacturonate lyase (AHRD V1 ***- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0030246 NbS00006513g0008.1 protein AED:0.43 eAED:0.59 QI:0|0.2|0|1|0|0.33|6|0|217; (*GB) gi|168034453|ref|XP_001769727.1| (e_value=7e-36) predicted protein [Physcomitrella patens subsp. patens];; (*TAIR) AT1G09910.1 (e_value=5e-38) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc11g011320.1.1 (e_value=5e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4363739-4369373 transcript_region:SL2.40ch11:4363739..4369373+ go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00062030g0001.1 protein AED:0.21 eAED:0.23 QI:0|0|0|0.33|1|1|3|0|95; (*ITAG) Solyc04g007990.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:1647782-1647994 transcript_region:SL2.40ch04:1647782..1647994+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001289g0001.1 protein AED:0.16 eAED:0.16 QI:925|1|0.5|1|0|0.5|2|1740|119 NbS00001289g0021.1 protein AED:0.32 eAED:0.32 QI:0|0.71|0.5|0.87|0.85|0.75|8|0|259; (*GB) gi|356497311|ref|XP_003517504.1| (e_value=2e-63) PREDICTED: uncharacterized protein LOC100815497 isoform 1 [Glycine max];; (*TAIR) AT4G10970.4 (e_value=6e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6719718-6721885 REVERSE LENGTH=217;; (*ITAG) Solyc08g008350.2.1 (e_value=3e-85) genomic_reference:SL2.40ch08 gene_region:2775953-2778909 transcript_region:SL2.40ch08:2775953..2778909+ functional_description:"Ubiquitin carrier protein (AHRD V1 ***- B8BAA3_ORYSI)"; NbS00001289g0025.1 protein AED:0.32 eAED:0.33 QI:0|0.66|0.42|0.85|0.83|0.71|7|0|224; (*GB) gi|294862567|gb|ADF45668.1| (e_value=2e-130) nucleoside diphosphate kinase 1 [Solanum tuberosum];; (*SWP) sp|Q8LAH8|NDK4_ARATH (e_value=2e-108) Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDK4 PE=1 SV=2;; (*TAIR) AT4G23900.1 (e_value=1e-109) | Symbols: | Nucleoside diphosphate kinase family protein | chr4:12424505-12426318 FORWARD LENGTH=237;; (*ITAG) Solyc08g082430.2.1 (e_value=6e-132) genomic_reference:SL2.40ch08 gene_region:62404261-62407246 transcript_region:SL2.40ch08:62404261..62407246+ go_terms:GO:0008270 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- D5ILC3_SOLTU); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0008270 NbS00001289g0018.1 protein AED:0.52 eAED:0.52 QI:0|1|0|1|0|0.5|2|0|82; (*GB) gi|388495966|gb|AFK36049.1| (e_value=3e-22) unknown [Lotus japonicus];; (*TAIR) AT4G23885.1 (e_value=8e-18) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:12419472-12420240 FORWARD LENGTH=77;; (*ITAG) Solyc08g008330.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:2761119-2765836 transcript_region:SL2.40ch08:2761119..2765836+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001289g0022.1 protein AED:0.24 eAED:0.24 QI:0|1|0.33|1|0|0.33|3|0|93; (*GB) gi|193290710|gb|ACF17663.1| (e_value=2e-26) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9T0A0|LACS4_ARATH (e_value=6e-27) Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1;; (*TAIR) AT4G23850.1 (e_value=4e-28) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666;; (*ITAG) Solyc08g008310.2.1 (e_value=2e-36) genomic_reference:SL2.40ch08 gene_region:2733245-2745937 transcript_region:SL2.40ch08:2733245..2745937- go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid-CoA ligase (AHRD V1 **** B2WS80_ARAHA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00001289g0028.1 protein AED:0.12 eAED:1.00 QI:60|0|0|1|0|0|2|180|34 NbS00044419g0001.1 protein AED:0.01 eAED:0.01 QI:608|1|0.5|1|0|0|2|565|46 NbS00022604g0009.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0.5|2|0|233; (*GB) gi|224065162|ref|XP_002301695.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NLC8|Y1648_ARATH (e_value=5e-39) Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1;; (*TAIR) AT1G66480.1 (e_value=4e-40) | Symbols: | plastid movement impaired 2 | chr1:24805770-24807405 REVERSE LENGTH=225;; (*ITAG) Solyc02g091360.1.1 (e_value=8e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47258561-47259061 transcript_region:SL2.40ch02:47258561..47259061+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022604g0002.1 protein AED:0.12 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|366; (*GB) gi|147770239|emb|CAN73956.1| (e_value=3e-74) hypothetical protein VITISV_026134 [Vitis vinifera];; (*ITAG) Solyc02g091090.2.1 (e_value=2e-138) genomic_reference:SL2.40ch02 gene_region:47076668-47079219 transcript_region:SL2.40ch02:47076668..47079219- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 *-*- D7KCN6_ARALY); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0016020 NbS00022604g0010.1 protein AED:0.24 eAED:0.25 QI:278|0.81|0.75|1|0.63|0.75|12|318|290; (*GB) gi|68131815|gb|AAY85186.1| (e_value=1e-160) pyridoxal kinase [Solanum tuberosum];; (*SWP) sp|Q8W1X2|PDXK_ARATH (e_value=8e-140) Pyridoxal kinase OS=Arabidopsis thaliana GN=PK PE=1 SV=2;; (*TAIR) AT5G37850.3 (e_value=8e-147) | Symbols: SOS4 | pfkB-like carbohydrate kinase family protein | chr5:15065394-15068783 FORWARD LENGTH=315;; (*ITAG) Solyc02g091340.2.1 (e_value=8e-165) genomic_reference:SL2.40ch02 gene_region:47241318-47251478 transcript_region:SL2.40ch02:47241318..47251478- go_terms:GO:0008478 functional_description:"Pyridoxal kinase (AHRD V1 **** Q4JR84_SOLTU); contains Interpro domain(s) IPR004625 Pyridoxal phosphate (active vitamin B6) biosynthesis, pyridoxal kinase "; GO:0008478 NbS00021753g0005.1 protein AED:0.01 eAED:0.02 QI:0|0|0|1|1|1|2|0|355; (*GB) gi|297718792|gb|ADI50287.1| (e_value=0.0) plastid RNA-binding protein 1 [Nicotiana benthamiana];; (*TAIR) AT2G37920.1 (e_value=7e-63) | Symbols: emb1513 | copper ion transmembrane transporters | chr2:15869269-15870024 REVERSE LENGTH=251;; (*ITAG) Solyc09g011410.2.1 (e_value=1e-139) genomic_reference:SL2.40ch09 gene_region:4748484-4750762 transcript_region:SL2.40ch09:4748484..4750762- go_terms:GO:0006306 functional_description:"Plastid RNA-binding protein 1 (AHRD V1 ***- D9J062_NICBE)"; GO:0006306 NbS00055661g0004.1 protein AED:0.03 eAED:0.03 QI:207|0.83|0.85|1|0.5|0.57|7|418|283; (*GB) gi|147766029|emb|CAN61397.1| (e_value=4e-138) hypothetical protein VITISV_015779 [Vitis vinifera];; (*SWP) sp|Q8GYR4|QKIL4_ARATH (e_value=4e-129) KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1;; (*TAIR) AT3G08620.1 (e_value=3e-130) | Symbols: | RNA-binding KH domain-containing protein | chr3:2617925-2620314 FORWARD LENGTH=283;; (*ITAG) Solyc06g082710.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44722997-44726998 transcript_region:SL2.40ch06:44722997..44726998- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B4FN92_MAIZE); contains Interpro domain(s) IPR004087 K Homology "; GO:0003676 NbS00004512g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.72|0.66|0.91|0.63|0.58|12|664|447; (*GB) gi|224102601|ref|XP_002312743.1| (e_value=7e-133) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4V3C7|Y4423_ARATH (e_value=4e-115) DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1;; (*TAIR) AT4G14230.1 (e_value=3e-116) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr4:8200850-8203130 REVERSE LENGTH=495;; (*ITAG) Solyc01g080160.2.1 (e_value=3e-157) genomic_reference:SL2.40ch01 gene_region:71859758-71868013 transcript_region:SL2.40ch01:71859758..71868013+ functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00058301g0002.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|1|2|0|423; (*GB) gi|343887309|dbj|BAK61855.1| (e_value=1e-54) hypothetical protein [Citrus unshiu];; (*TAIR) AT1G54200.1 (e_value=1e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). | chr1:20235855-20236955 FORWARD LENGTH=366;; (*ITAG) Solyc08g062180.1.1 (e_value=3e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:47848158-47849321 transcript_region:SL2.40ch08:47848158..47849321- functional_description:"Unknown Protein (AHRD V1)"; NbS00058301g0003.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0|0|2|0|82; (*GB) gi|225429640|ref|XP_002279717.1| (e_value=3e-15) PREDICTED: uncharacterized protein LOC100255952 [Vitis vinifera];; (*ITAG) Solyc08g062180.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:47848158-47849321 transcript_region:SL2.40ch08:47848158..47849321- functional_description:"Unknown Protein (AHRD V1)"; NbS00017230g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|358347228|ref|XP_003637661.1| (e_value=8e-71) Calcium-binding pollen allergen [Medicago truncatula];; (*SWP) sp|Q9FYK2|CML25_ARATH (e_value=5e-61) Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=4e-62) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc01g005370.2.1 (e_value=5e-79) genomic_reference:SL2.40ch01 gene_region:259638-260564 transcript_region:SL2.40ch01:259638..260564+ go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00017230g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.6|1|1|1|5|0|459; (*GB) gi|255570061|ref|XP_002525993.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|B0VX69|SETD3_CALJA (e_value=4e-19) Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2;; (*TAIR) AT1G24610.1 (e_value=0.0) | Symbols: | Rubisco methyltransferase family protein | chr1:8720906-8722711 REVERSE LENGTH=476;; (*ITAG) Solyc01g005380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:261004-265599 transcript_region:SL2.40ch01:261004..265599+ functional_description:"SET domain containing protein (AHRD V1 ***- B6U0H4_MAIZE); contains Interpro domain(s) IPR001214 SET "; NbS00026326g0001.1 protein AED:0.10 eAED:0.11 QI:0|1|0.66|1|1|1|6|0|511; (*GB) gi|296086143|emb|CBI31584.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=4e-156) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G05940.1 (e_value=0.0) | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide exchange factor 5 | chr5:1786028-1788363 FORWARD LENGTH=611;; (*ITAG) Solyc08g006550.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:1163040-1165586 transcript_region:SL2.40ch08:1163040..1165586+ go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00028923g0006.1 protein AED:0.27 eAED:0.27 QI:271|0|0.33|1|0|0.33|3|0|309; (*GB) gi|225449392|ref|XP_002282536.1| (e_value=4e-145) PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Vitis vinifera];; (*SWP) sp|O22286|BPM3_ARATH (e_value=7e-132) BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1;; (*TAIR) AT2G39760.1 (e_value=5e-133) | Symbols: ATBPM3, BPM3 | BTB/POZ/MATH-domains containing protein | chr2:16583213-16585983 FORWARD LENGTH=408;; (*ITAG) Solyc05g052960.2.1 (e_value=6e-159) genomic_reference:SL2.40ch05 gene_region:62276946-62282506 transcript_region:SL2.40ch05:62276946..62282506- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00032133g0009.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.42|0.85|0.66|0.57|7|0|1109; (*GB) gi|302143945|emb|CBI23050.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LM76|PUB44_ARATH (e_value=1e-41) U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1;; (*TAIR) AT1G20780.1 (e_value=1e-42) | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated E3 ubiquitin ligase 1 | chr1:7217812-7220609 FORWARD LENGTH=801;; (*ITAG) Solyc03g082690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46158633-46163437 transcript_region:SL2.40ch03:46158633..46163437+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00032133g0008.1 protein AED:0.06 eAED:0.06 QI:0|1|0.66|1|1|1|6|0|739; (*GB) gi|359490721|ref|XP_002275134.2| (e_value=0.0) PREDICTED: oligopeptide transporter 6-like [Vitis vinifera];; (*SWP) sp|Q9T095|OPT6_ARATH (e_value=0.0) Oligopeptide transporter 6 OS=Arabidopsis thaliana GN=OPT6 PE=2 SV=1;; (*TAIR) AT4G27730.1 (e_value=0.0) | Symbols: ATOPT6, OPT6 | oligopeptide transporter 1 | chr4:13834024-13836468 REVERSE LENGTH=736;; (*ITAG) Solyc03g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46163596-46167478 transcript_region:SL2.40ch03:46163596..46167478- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 9 (AHRD V1 **** B6SVF4_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00021530g0003.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|229; (*ITAG) Solyc11g065520.1.1 (e_value=8e-37) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00042356g0003.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.66|1|1|3|0|246; (*GB) gi|356510322|ref|XP_003523888.1| (e_value=2e-75) PREDICTED: cytochrome P450 82C4-like [Glycine max];; (*SWP) sp|Q9SZ46|C82C4_ARATH (e_value=3e-66) Cytochrome P450 82C4 OS=Arabidopsis thaliana GN=CYP82C4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=2e-67) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc12g088970.1.1 (e_value=4e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62586297-62588536 transcript_region:SL2.40ch12:62586297..62588536+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00018792g0007.1 protein AED:0.17 eAED:0.18 QI:151|0.83|0.84|1|0.83|0.76|13|0|615; (*GB) gi|224101199|ref|XP_002312182.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FLB0|RH18_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1;; (*TAIR) AT5G05450.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:1612077-1615195 FORWARD LENGTH=593;; (*ITAG) Solyc02g078880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38097689-38103566 transcript_region:SL2.40ch02:38097689..38103566- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- C4QVZ6_PICPG); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00018792g0009.1 protein AED:0.05 eAED:0.05 QI:87|1|1|1|0.2|0.16|6|178|423; (*GB) gi|357492809|ref|XP_003616693.1| (e_value=0.0) CCP [Medicago truncatula];; (*TAIR) AT2G40320.1 (e_value=0.0) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc06g050920.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:30288370-30291010 transcript_region:SL2.40ch06:30288370..30291010- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00015646g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|360; (*GB) gi|225425196|ref|XP_002266098.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100260747 [Vitis vinifera];; (*TAIR) AT1G12060.1 (e_value=1e-12) | Symbols: ATBAG5, BAG5 | BCL-2-associated athanogene 5 | chr1:4076334-4076981 FORWARD LENGTH=215;; (*ITAG) Solyc06g072430.1.1 (e_value=5e-129) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41073324-41074445 transcript_region:SL2.40ch06:41073324..41074445+ go_terms:GO:0006915 functional_description:"Bcl-2-associated athanogene-like protein (AHRD V1 *-*- D1MIX4_VITVI); contains Interpro domain(s) IPR003103 Apoptosis regulator Bcl-2 protein, BAG "; GO:0006915 NbS00015646g0005.1 protein AED:0.28 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|140; (*ITAG) Solyc04g081460.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:63019842-63020627 transcript_region:SL2.40ch04:63019842..63020627- functional_description:"Unknown Protein (AHRD V1)"; NbS00038003g0005.1 protein AED:0.15 eAED:0.15 QI:569|0.88|0.8|1|0.66|0.7|10|24|414; (*GB) gi|356519964|ref|XP_003528638.1| (e_value=7e-165) PREDICTED: ubiquitin-like-specific protease ESD4-like [Glycine max];; (*SWP) sp|Q94F30|ESD4_ARATH (e_value=2e-141) Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1;; (*TAIR) AT4G15880.1 (e_value=1e-142) | Symbols: ESD4, ATESD4 | Cysteine proteinases superfamily protein | chr4:9012769-9015797 FORWARD LENGTH=489;; (*ITAG) Solyc12g099530.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64988458-64992828 transcript_region:SL2.40ch12:64988458..64992828+ go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00038003g0008.1 protein AED:0.03 eAED:0.03 QI:310|1|1|1|0.84|0.78|14|620|794; (*GB) gi|225432256|ref|XP_002271765.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240940 [Vitis vinifera];; (*SWP) sp|Q99661|KIF2C_HUMAN (e_value=8e-117) Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2;; (*TAIR) AT3G16630.2 (e_value=0.0) | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794;; (*ITAG) Solyc12g099540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64994416-65000932 transcript_region:SL2.40ch12:64994416..65000932- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q940B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00039940g0007.1 protein AED:0.05 eAED:0.08 QI:0|0|0|1|0|0|3|0|552; (*GB) gi|255583276|ref|XP_002532402.1| (e_value=6e-115) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q42798|C93A1_SOYBN (e_value=4e-84) Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1;; (*TAIR) AT2G42250.1 (e_value=4e-102) | Symbols: CYP712A1 | cytochrome P450, family 712, subfamily A, polypeptide 1 | chr2:17600075-17601709 REVERSE LENGTH=514;; (*ITAG) Solyc10g018150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6690144-6692010 transcript_region:SL2.40ch10:6690144..6692010- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00059335g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|778; (*GB) gi|225428796|ref|XP_002285135.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g15690 [Vitis vinifera];; (*SWP) sp|Q9ZQE5|PP153_ARATH (e_value=5e-175) Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2;; (*TAIR) AT2G15690.1 (e_value=4e-176) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6831855-6833594 REVERSE LENGTH=579;; (*ITAG) Solyc01g108180.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87311387-87313596 transcript_region:SL2.40ch01:87311387..87313596+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00011401g0001.1 protein AED:0.12 eAED:0.25 QI:70|0.62|0.66|1|0.75|0.66|9|325|413; (*GB) gi|255544812|ref|XP_002513467.1| (e_value=2e-26) ubiquitin-protein ligase, putative [Ricinus communis];; (*ITAG) Solyc04g079030.2.1 (e_value=4e-120) genomic_reference:SL2.40ch04 gene_region:61220807-61226659 transcript_region:SL2.40ch04:61220807..61226659+ go_terms:GO:0008152 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 *-*- B6TRK5_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00011401g0117.1 protein AED:0.23 eAED:0.23 QI:0|1|1|1|0.85|0.93|15|361|934 NbS00011401g0114.1 protein AED:0.31 eAED:0.37 QI:0|0|0|1|1|1|2|0|96 NbS00046505g0005.1 protein AED:0.29 eAED:0.31 QI:0|0|0|0.33|1|1|3|0|221; (*GB) gi|15234272|ref|NP_194508.1| (e_value=3e-54) Calcium-binding EF hand family protein [Arabidopsis thaliana];; (*TAIR) AT4G27790.1 (e_value=7e-57) | Symbols: | Calcium-binding EF hand family protein | chr4:13850066-13851488 FORWARD LENGTH=345;; (*ITAG) Solyc06g052040.2.1 (e_value=3e-58) genomic_reference:SL2.40ch06 gene_region:32195087-32196001 transcript_region:SL2.40ch06:32195087..32196001- functional_description:"Calcium-binding EF hand family protein (AHRD V1 ***- D7MDR7_ARALY)"; NbS00037017g0001.1 protein AED:0.06 eAED:0.08 QI:0|1|0|1|1|1|2|0|233; (*GB) gi|147775931|emb|CAN75719.1| (e_value=1e-87) hypothetical protein VITISV_037620 [Vitis vinifera];; (*SWP) sp|Q9SLB6|LBD17_ARATH (e_value=3e-53) LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1;; (*TAIR) AT2G42440.1 (e_value=2e-54) | Symbols: | Lateral organ boundaries (LOB) domain family protein | chr2:17668888-17669750 REVERSE LENGTH=244;; (*ITAG) Solyc09g066270.2.1 (e_value=4e-109) genomic_reference:SL2.40ch09 gene_region:60295041-60296015 transcript_region:SL2.40ch09:60295041..60296015- functional_description:"LOB domain protein 14 (AHRD V1 ***- D7LD16_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00016650g0005.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|609; (*GB) gi|359487666|ref|XP_002277942.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Vitis vinifera];; (*SWP) sp|O04504|PPR27_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1;; (*TAIR) AT1G09820.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3190594-3192414 REVERSE LENGTH=606;; (*ITAG) Solyc01g100450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82236040-82237857 transcript_region:SL2.40ch01:82236040..82237857+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJU9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016650g0001.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|138; (*GB) gi|16580134|gb|AAK92215.1| (e_value=5e-82) bZIP transcription factor BZI-4 [Nicotiana tabacum];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=2e-24) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G62420.1 (e_value=8e-35) | Symbols: ATBZIP53, BZIP53 | basic region/leucine zipper motif 53 | chr3:23091844-23092284 REVERSE LENGTH=146;; (*ITAG) Solyc01g100460.2.1 (e_value=3e-77) genomic_reference:SL2.40ch01 gene_region:82243649-82244921 transcript_region:SL2.40ch01:82243649..82244921+ go_terms:GO:0043565,GO:0003700,GO:0046982 functional_description:"BZIP transcription factor (AHRD V1 **** C0LQL1_9CARY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0043565,GO:0003700,GO:0046982 NbS00016650g0004.1 protein AED:0.32 eAED:0.37 QI:0|0|0|1|1|1|2|0|259; (*GB) gi|388496142|gb|AFK36137.1| (e_value=3e-83) unknown [Lotus japonicus];; (*TAIR) AT1G56423.1 (e_value=2e-80) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:21129075-21130558 FORWARD LENGTH=270;; (*ITAG) Solyc01g100480.2.1 (e_value=7e-126) genomic_reference:SL2.40ch01 gene_region:82248236-82253849 transcript_region:SL2.40ch01:82248236..82253849+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016650g0015.1 protein AED:0.23 eAED:0.23 QI:0|1|0|1|1|1|2|0|313; (*GB) gi|225437402|ref|XP_002268231.1| (e_value=2e-104) PREDICTED: uncharacterized protein C57A7.06 [Vitis vinifera];; (*SWP) sp|Q9BVJ6|UT14A_HUMAN (e_value=8e-13) U3 small nucleolar RNA-associated protein 14 homolog A OS=Homo sapiens GN=UTP14A PE=1 SV=1;; (*TAIR) AT4G02400.1 (e_value=2e-78) | Symbols: | U3 ribonucleoprotein (Utp) family protein | chr4:1054243-1057884 FORWARD LENGTH=855;; (*ITAG) Solyc09g005760.2.1 (e_value=3e-139) genomic_reference:SL2.40ch09 gene_region:527331-535057 transcript_region:SL2.40ch09:527331..535057+ go_terms:GO:0032040 functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 *-*- B6K6T5_SCHJY); contains Interpro domain(s) IPR006709 Small-subunit processome, Utp14 "; GO:0032040 NbS00016650g0017.1 protein AED:0.30 eAED:0.75 QI:0|0|0|1|1|1|4|0|293 NbS00011764g0010.1 protein AED:0.13 eAED:0.13 QI:239|1|1|1|1|1|12|489|531; (*GB) gi|225442595|ref|XP_002279221.1| (e_value=0.0) PREDICTED: protein disulfide isomerase-like 1-6 [Vitis vinifera];; (*SWP) sp|Q66GQ3|PDI16_ARATH (e_value=0.0) Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1;; (*TAIR) AT3G16110.1 (e_value=0.0) | Symbols: ATPDIL1-6, ATPDI4, PDI4, PDIL1-6 | PDI-like 1-6 | chr3:5460955-5463666 REVERSE LENGTH=534;; (*ITAG) Solyc03g120720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63066502-63072695 transcript_region:SL2.40ch03:63066502..63072695+ go_terms:GO:0003756 functional_description:"Protein disulfide isomerase L-3b (AHRD V1 **** C6KXH6_SOYBN); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0003756 NbS00011764g0016.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|1|1|2|0|298; (*GB) gi|224073917|ref|XP_002304198.1| (e_value=3e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G15230.1 (e_value=3e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5242729-5243196 REVERSE LENGTH=155;; (*ITAG) Solyc03g120740.1.1 (e_value=2e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63078678-63079178 transcript_region:SL2.40ch03:63078678..63079178- functional_description:"Unknown Protein (AHRD V1)"; NbS00011764g0015.1 protein AED:0.21 eAED:0.21 QI:276|0.33|0.71|1|0.33|0.71|7|0|277; (*GB) gi|225442593|ref|XP_002284423.1| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100266912 [Vitis vinifera];; (*TAIR) AT2G25737.1 (e_value=1e-38) | Symbols: | Sulfite exporter TauE/SafE family protein | chr2:10977174-10979677 FORWARD LENGTH=476;; (*ITAG) Solyc03g120730.2.1 (e_value=4e-65) genomic_reference:SL2.40ch03 gene_region:63072823-63076833 transcript_region:SL2.40ch03:63072823..63076833- go_terms:GO:0016021 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0016021 NbS00011764g0014.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|0|0|2|0|104; (*GB) gi|57014019|ref|YP_173490.1| (e_value=4e-40) hypothetical protein NitaMp153 [Nicotiana tabacum];; (*ITAG) Solyc01g065790.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007463g0012.1 protein AED:0.16 eAED:0.16 QI:7|0.95|0.95|1|0.95|0.95|24|224|831; (*GB) gi|255541710|ref|XP_002511919.1| (e_value=0.0) sec10, putative [Ricinus communis];; (*SWP) sp|Q8RVQ5|EXOC5_ARATH (e_value=0.0) Exocyst complex component 5 OS=Arabidopsis thaliana GN=SEC10 PE=2 SV=2;; (*TAIR) AT5G12370.2 (e_value=0.0) | Symbols: SEC10 | exocyst complex component sec10 | chr5:4003002-4008445 REVERSE LENGTH=825;; (*ITAG) Solyc03g095410.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49957019-49986156 transcript_region:SL2.40ch03:49957019..49986156+ go_terms:GO:0005737 functional_description:"Exocyst complex component protein (AHRD V1 ***- A8NX01_COPC7); contains Interpro domain(s) IPR009976 Exocyst complex component Sec10 "; GO:0005737 NbS00007463g0009.1 protein AED:0.43 eAED:0.57 QI:0|0|0|1|1|1|2|0|128; (*GB) gi|224096087|ref|XP_002310534.1| (e_value=6e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT5G27820.1 (e_value=7e-41) | Symbols: | Ribosomal L18p/L5e family protein | chr5:9860584-9860928 FORWARD LENGTH=114;; (*ITAG) Solyc07g045390.1.1 (e_value=2e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:55826799-55827089 transcript_region:SL2.40ch07:55826799..55827089+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L18 (AHRD V1 ***- B6SMG7_MAIZE); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00057983g0008.1 protein AED:0.29 eAED:0.29 QI:190|0.72|0.66|1|0.45|0.66|12|0|454; (*GB) gi|225470348|ref|XP_002269604.1| (e_value=0.0) PREDICTED: UPF0533 protein C5orf44 [Vitis vinifera];; (*SWP) sp|Q5RCG0|CE044_PONAB (e_value=9e-54) UPF0533 protein C5orf44 homolog OS=Pongo abelii PE=2 SV=1;; (*TAIR) AT2G47960.1 (e_value=0.0) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF974 (InterPro:IPR010378); Has 285 Blast hits to 284 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 150; Fungi - 68; Plants - 32; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr2:19625631-19628869 FORWARD LENGTH=442;; (*ITAG) Solyc10g008990.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3017001-3024548 transcript_region:SL2.40ch10:3017001..3024548+ go_terms:GO:0005515 functional_description:"UPF0533 protein C5orf44 homolog (AHRD V1 ***- CE044_PONAB); contains Interpro domain(s) IPR010378 Protein of unknown function DUF974 "; GO:0005515 NbS00030016g0005.1 protein AED:0.16 eAED:0.17 QI:55|0.5|0.8|1|0.5|0.8|5|34|377; (*GB) gi|225426098|ref|XP_002276929.1| (e_value=8e-155) PREDICTED: uncharacterized protein LOC100250094 [Vitis vinifera];; (*TAIR) AT5G60750.1 (e_value=6e-138) | Symbols: | CAAX amino terminal protease family protein | chr5:24431072-24433199 FORWARD LENGTH=347;; (*ITAG) Solyc08g081750.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61884243-61888381 transcript_region:SL2.40ch08:61884243..61888381- go_terms:GO:0004175 functional_description:"CAAX amino terminal protease family protein (AHRD V1 ***- D7MUD5_ARALY); contains Interpro domain(s) IPR003675 Abortive infection protein "; GO:0004175 NbS00021448g0010.1 protein AED:0.30 eAED:0.30 QI:0|0.5|0|0.66|0.5|1|3|0|104; (*GB) gi|68299225|emb|CAJ13713.1| (e_value=3e-52) hypothetical protein [Capsicum chinense];; (*TAIR) AT2G20820.1 (e_value=6e-31) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8964450-8965166 FORWARD LENGTH=93;; (*ITAG) Solyc12g005570.1.1 (e_value=3e-54) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:306887-309886 transcript_region:SL2.40ch12:306887..309886- functional_description:"Unknown Protein (AHRD V1)"; NbS00021448g0009.1 protein AED:0.14 eAED:0.16 QI:0|0|0|1|0.66|0.5|4|0|637; (*GB) gi|255553881|ref|XP_002517981.1| (e_value=2e-41) micronuclear linker histone polyprotein, putative [Ricinus communis];; (*ITAG) Solyc12g005560.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:303377-306070 transcript_region:SL2.40ch12:303377..306070+ go_terms:GO:0009168 functional_description:"Unknown Protein (AHRD V1)"; GO:0009168 NbS00000067g0003.1 protein AED:0.17 eAED:0.17 QI:0|0.83|0.57|1|0.83|0.85|7|0|374; (*GB) gi|255552451|ref|XP_002517269.1| (e_value=3e-178) Auxin-induced protein 5NG4, putative [Ricinus communis];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=4e-65) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=1e-139) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g078270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59428108-59430225 transcript_region:SL2.40ch10:59428108..59430225- go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY45_9BRAS); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00000067g0202.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|95 NbS00000067g0218.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.66|1|1|3|0|226 NbS00000067g0206.1 protein AED:0.19 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|445 NbS00000067g0204.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.75|1|1|4|0|269 NbS00000067g0207.1 protein AED:0.16 eAED:0.16 QI:0|0|0|1|1|1|2|0|315 NbS00000067g0209.1 protein AED:0.08 eAED:0.26 QI:0|0|0|1|1|1|2|0|812 NbS00000067g0221.1 protein AED:0.13 eAED:0.23 QI:47|0|0|1|0|0|2|0|255 NbS00000067g0219.1 protein AED:0.20 eAED:0.45 QI:0|0|0|1|0|0|2|0|71 NbS00005333g0005.1 protein AED:0.05 eAED:0.05 QI:80|1|1|1|1|1|4|262|313; (*GB) gi|388513173|gb|AFK44648.1| (e_value=6e-151) unknown [Medicago truncatula];; (*SWP) sp|P34913|HYES_HUMAN (e_value=2e-35) Epoxide hydrolase 2 OS=Homo sapiens GN=EPHX2 PE=1 SV=2;; (*TAIR) AT3G51000.1 (e_value=5e-62) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323;; (*ITAG) Solyc02g078570.2.1 (e_value=1e-155) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00005333g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|236|204; (*GB) gi|388491146|gb|AFK33639.1| (e_value=2e-42) unknown [Medicago truncatula];; (*SWP) sp|Q9SKU1|CLC1_ARATH (e_value=1e-36) Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1;; (*TAIR) AT2G20760.1 (e_value=1e-37) | Symbols: | Clathrin light chain protein | chr2:8943279-8945108 REVERSE LENGTH=338;; (*ITAG) Solyc03g006510.2.1 (e_value=2e-49) genomic_reference:SL2.40ch03 gene_region:1090410-1093485 transcript_region:SL2.40ch03:1090410..1093485- go_terms:GO:0030132 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000996 Clathrin light chain "; GO:0030132 NbS00015569g0009.1 protein AED:0.10 eAED:0.10 QI:1772|0.8|0.72|1|0.8|0.72|11|347|644; (*GB) gi|359474019|ref|XP_002269404.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera];; (*TAIR) AT1G63300.1 (e_value=2e-160) | Symbols: | Myosin heavy chain-related protein | chr1:23482193-23486067 FORWARD LENGTH=1029;; (*ITAG) Solyc08g080780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61145282-61151153 transcript_region:SL2.40ch08:61145282..61151153- functional_description:"SKIP interacting protein 24 (Fragment) (AHRD V1 *--- B8Q8B0_ORYSI)"; NbS00015569g0011.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.66|1|0|0.66|3|239|185; (*GB) gi|297742543|emb|CBI34692.3| (e_value=2e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LUM1|LOR11_ARATH (e_value=5e-41) Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1;; (*TAIR) AT3G14260.1 (e_value=4e-42) | Symbols: | Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230;; (*ITAG) Solyc08g080760.1.1 (e_value=7e-93) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61138455-61139276 transcript_region:SL2.40ch08:61138455..61139276+ functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00013238g0119.1 protein AED:0.13 eAED:0.14 QI:0|0.5|0|1|1|1|3|0|652 NbS00013238g0118.1 protein AED:0.27 eAED:0.26 QI:72|0.66|0.56|0.93|0.66|0.56|16|616|659 NbS00013238g0103.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|72 NbS00013238g0126.1 protein AED:0.12 eAED:0.12 QI:248|1|1|1|0.83|0.57|7|0|428 NbS00013238g0120.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.57|0.85|0.66|0.85|7|0|311 NbS00037413g0006.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.37|1|1|8|0|334; (*ITAG) Solyc07g015850.1.1 (e_value=9e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbS00020645g0011.1 protein AED:0.13 eAED:0.13 QI:0|0.4|0.33|1|0.4|0.33|6|229|225; (*GB) gi|255586813|ref|XP_002534020.1| (e_value=9e-114) protein-tyrosine phosphatase 1, plants, putative [Ricinus communis];; (*SWP) sp|O82656|PTP1_ARATH (e_value=1e-102) Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1;; (*TAIR) AT1G71860.3 (e_value=1e-103) | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase 1 | chr1:27026866-27028675 FORWARD LENGTH=340;; (*ITAG) Solyc11g016990.1.1 (e_value=4e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7660095-7671231 transcript_region:SL2.40ch11:7660095..7671231+ go_terms:GO:0016311,GO:0006470 functional_description:"Receptor-type tyrosine-protein phosphatase S (AHRD V1 ***- B6TAK5_MAIZE); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0016311,GO:0006470 NbS00020645g0012.1 protein AED:0.24 eAED:0.24 QI:0|1|0.66|1|1|0.66|3|0|180; (*GB) gi|76573355|gb|ABA46782.1| (e_value=4e-103) unknown [Solanum tuberosum];; (*SWP) sp|B5DGI7|RBM8A_SALSA (e_value=8e-43) RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1;; (*TAIR) AT1G51510.1 (e_value=1e-64) | Symbols: Y14 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:19103072-19104753 REVERSE LENGTH=202;; (*ITAG) Solyc06g065470.2.1 (e_value=6e-82) genomic_reference:SL2.40ch06 gene_region:37255674-37260503 transcript_region:SL2.40ch06:37255674..37260503- go_terms:GO:0005515 functional_description:"RNA-binding protein 8A (AHRD V1 *--* B6TR37_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00020645g0104.1 protein AED:0.37 eAED:0.39 QI:0|0.8|0.5|1|0.6|0.5|6|0|223 NbS00020645g0105.1 protein AED:0.61 eAED:0.61 QI:0|0.5|0.2|1|0.75|0.8|5|0|282 NbS00020849g0005.1 protein AED:0.14 eAED:0.14 QI:0|0.5|0.2|1|0.5|0.4|5|0|734; (*GB) gi|359476084|ref|XP_002282081.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Vitis vinifera];; (*SWP) sp|Q9SIL5|PP165_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1;; (*TAIR) AT2G20540.1 (e_value=0.0) | Symbols: MEF21 | mitochondrial editing factor 21 | chr2:8844160-8845764 FORWARD LENGTH=534;; (*ITAG) Solyc09g092150.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66645388-66646998 transcript_region:SL2.40ch09:66645388..66646998+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3P7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022560g0003.1 protein AED:0.27 eAED:0.27 QI:245|1|1|1|1|1|8|370|246; (*GB) gi|147861738|emb|CAN83165.1| (e_value=1e-94) hypothetical protein VITISV_040233 [Vitis vinifera];; (*TAIR) AT1G62780.1 (e_value=7e-87) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249349-23251066 REVERSE LENGTH=237;; (*ITAG) Solyc08g079240.2.1 (e_value=1e-130) genomic_reference:SL2.40ch08 gene_region:60020025-60025240 transcript_region:SL2.40ch08:60020025..60025240- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q01GV2_OSTTA)"; NbS00007105g0103.1 protein AED:0.56 eAED:0.62 QI:0|0|0|0.66|1|1|3|0|116 NbS00007105g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|1|2|0|89; (*ITAG) Solyc02g076800.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36490930-36491505 transcript_region:SL2.40ch02:36490930..36491505+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007105g0006.1 protein AED:0.18 eAED:0.32 QI:0|0|0|1|0|0|2|0|290; (*ITAG) Solyc04g080520.1.1 (e_value=4e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62260297-62262138 transcript_region:SL2.40ch04:62260297..62262138+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007105g0007.1 protein AED:0.42 eAED:0.49 QI:0|0|0|1|0|0|2|0|73 NbS00041136g0009.1 protein AED:0.34 eAED:0.34 QI:0|0.88|0.88|1|0.88|0.94|18|0|704; (*GB) gi|255584037|ref|XP_002532763.1| (e_value=0.0) dynamin, putative [Ricinus communis];; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=0.0) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=0.0) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc01g106050.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85782931-85793738 transcript_region:SL2.40ch01:85782931..85793738- go_terms:GO:0042803 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0042803 NbS00054958g0002.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.33|1|1|3|0|166; (*GB) gi|224129190|ref|XP_002320523.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|O23310|NFYB3_ARATH (e_value=5e-76) Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1;; (*TAIR) AT4G14540.1 (e_value=4e-77) | Symbols: NF-YB3 | nuclear factor Y, subunit B3 | chr4:8344663-8345148 FORWARD LENGTH=161;; (*ITAG) Solyc12g006120.1.1 (e_value=3e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:682575-683183 transcript_region:SL2.40ch12:682575..683183- go_terms:GO:0005634,GO:0003677,GO:0005622 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 *-*- B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0005634,GO:0003677,GO:0005622 NbS00023936g0001.1 protein AED:0.28 eAED:0.43 QI:0|0|0|0.25|1|1|4|0|278; (*GB) gi|109289903|gb|AAP45178.2| (e_value=5e-65) Zinc knuckle family protein [Solanum bulbocastanum];; (*ITAG) Solyc09g059090.1.1 (e_value=4e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:48816733-48817107 transcript_region:SL2.40ch09:48816733..48817107- functional_description:"Zinc knuckle family protein (AHRD V1 ***- Q7XA28_SOLBU); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00019801g0003.1 protein AED:0.32 eAED:0.34 QI:0|1|0.5|1|1|1|2|539|211; (*GB) gi|356512517|ref|XP_003524965.1| (e_value=2e-57) PREDICTED: uncharacterized protein LOC100791129 [Glycine max];; (*TAIR) AT5G05830.1 (e_value=4e-30) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:1755910-1756825 FORWARD LENGTH=204;; (*ITAG) Solyc03g006060.2.1 (e_value=3e-110) genomic_reference:SL2.40ch03 gene_region:748380-751167 transcript_region:SL2.40ch03:748380..751167- go_terms:GO:0005515 functional_description:"Zinc finger family protein (Fragment) (AHRD V1 *--- D7M766_ARALY); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00041488g0006.1 protein AED:0.07 eAED:0.08 QI:0|0.8|0.66|1|1|1|6|0|245; (*GB) gi|359480247|ref|XP_002282028.2| (e_value=8e-115) PREDICTED: paladin [Vitis vinifera];; (*TAIR) AT3G62010.1 (e_value=2e-111) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254;; (*ITAG) Solyc01g068600.2.1 (e_value=6e-143) genomic_reference:SL2.40ch01 gene_region:70191075-70197230 transcript_region:SL2.40ch01:70191075..70197230+ functional_description:"Paladin-like protein (AHRD V1 **-- D0NS27_PHYIN)"; NbS00041488g0009.1 protein AED:0.18 eAED:0.18 QI:0|0.66|0.61|0.84|0.66|0.76|13|0|922; (*GB) gi|255548167|ref|XP_002515140.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8JHZ8|PALD_CHICK (e_value=6e-30) Paladin OS=Gallus gallus GN=PALD PE=2 SV=2;; (*TAIR) AT3G62010.1 (e_value=0.0) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254;; (*ITAG) Solyc01g068610.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70202881-70220200 transcript_region:SL2.40ch01:70202881..70220200+ functional_description:"Metal ion binding protein (AHRD V1 **-- D7LSR9_ARALY)"; NbS00006843g0005.1 protein AED:0.30 eAED:0.32 QI:46|0.71|0.62|1|1|0.87|8|0|617; (*GB) gi|296084459|emb|CBI25018.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=1e-34) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT5G03540.1 (e_value=0.0) | Symbols: ATEXO70A1, EXO70A1 | exocyst subunit exo70 family protein A1 | chr5:889606-893916 FORWARD LENGTH=638;; (*ITAG) Solyc11g006620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00006843g0007.1 protein AED:0.35 eAED:0.35 QI:58|0.8|0.83|1|0.8|0.66|6|131|195; (*GB) gi|224110130|ref|XP_002315423.1| (e_value=6e-69) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04830.2 (e_value=4e-64) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:1402294-1403671 REVERSE LENGTH=178;; (*ITAG) Solyc11g006510.1.1 (e_value=3e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1177337-1180831 transcript_region:SL2.40ch11:1177337..1180831- functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC7_ARATH)"; NbS00057669g0004.1 protein AED:0.26 eAED:0.26 QI:183|1|1|1|1|1|8|674|249; (*GB) gi|225449975|ref|XP_002272409.1| (e_value=7e-145) PREDICTED: methyltransferase-like protein 13 [Vitis vinifera];; (*SWP) sp|A5PK19|MET13_BOVIN (e_value=2e-27) Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1;; (*TAIR) AT3G60910.1 (e_value=7e-131) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:22501727-22503182 FORWARD LENGTH=252;; (*ITAG) Solyc01g088000.2.1 (e_value=1e-160) genomic_reference:SL2.40ch01 gene_region:74602063-74609120 transcript_region:SL2.40ch01:74602063..74609120- go_terms:GO:0003824 functional_description:"Methyltransferase (AHRD V1 *-*- D0N411_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0003824 NbS00033895g0001.1 protein AED:0.10 eAED:0.64 QI:0|0|0|1|0|0|2|0|127 NbS00030903g0006.1 protein AED:0.16 eAED:0.16 QI:0|0.28|0.37|0.75|1|1|8|329|289; (*GB) gi|255571087|ref|XP_002526494.1| (e_value=3e-88) 40S ribosomal protein S11, putative [Ricinus communis];; (*SWP) sp|P17093|RS11_SOYBN (e_value=5e-89) 40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2;; (*TAIR) AT5G23740.1 (e_value=2e-86) | Symbols: RPS11-BETA | ribosomal protein S11-beta | chr5:8008251-8009330 REVERSE LENGTH=159;; (*ITAG) Solyc06g073800.2.1 (e_value=4e-93) genomic_reference:SL2.40ch06 gene_region:41942028-41944004 transcript_region:SL2.40ch06:41942028..41944004- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S11 (AHRD V1 ***- D7MBM0_ARALY); contains Interpro domain(s) IPR000266 Ribosomal protein S17 "; GO:0003735,GO:0005515 NbS00047190g0001.1 protein AED:0.07 eAED:0.07 QI:260|1|1|1|0.62|0.44|9|358|488; (*GB) gi|359473485|ref|XP_003631305.1| (e_value=5e-171) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera];; (*SWP) sp|Q9CAA9|BH049_ARATH (e_value=2e-98) Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1;; (*TAIR) AT1G68920.3 (e_value=3e-101) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:25915620-25917675 FORWARD LENGTH=485;; (*ITAG) Solyc05g010610.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4848664-4852023 transcript_region:SL2.40ch05:4848664..4852023+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00042806g0011.1 protein AED:0.30 eAED:0.33 QI:0|0.33|0.28|1|0.83|0.57|7|0|358; (*GB) gi|297740633|emb|CBI30815.3| (e_value=7e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74970|PRP39_SCHPO (e_value=7e-16) Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp39 PE=2 SV=1;; (*TAIR) AT5G46400.1 (e_value=1e-61) | Symbols: AT PRP39-2, PRP39-2 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:18820032-18824522 FORWARD LENGTH=1036;; (*ITAG) Solyc02g071230.1.1 (e_value=2e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:35278320-35290177 transcript_region:SL2.40ch02:35278320..35290177+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-processing factor 39 (AHRD V1 ***- B2VZM3_PYRTR); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helix "; GO:0005488,GO:0005622 NbS00042806g0012.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|187; (*GB) gi|224075846|ref|XP_002304794.1| (e_value=5e-72) type-a response regulator [Populus trichocarpa];; (*SWP) sp|O80366|ARR9_ARATH (e_value=3e-63) Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1;; (*TAIR) AT3G57040.1 (e_value=2e-64) | Symbols: ARR9, ATRR4 | response regulator 9 | chr3:21110059-21111228 FORWARD LENGTH=234;; (*ITAG) Solyc02g071220.2.1 (e_value=2e-95) genomic_reference:SL2.40ch02 gene_region:35270722-35271697 transcript_region:SL2.40ch02:35270722..35271697- go_terms:GO:0003700 functional_description:"Response regulator 5 (AHRD V1 ***- Q9FRZ0_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0003700 NbS00019243g0006.1 protein AED:0.16 eAED:0.16 QI:321|0.75|0.6|1|0.25|0.6|5|0|543; (*GB) gi|356568230|ref|XP_003552316.1| (e_value=0.0) PREDICTED: probable receptor-like protein kinase At5g15080-like [Glycine max];; (*SWP) sp|Q9LFP7|Y5158_ARATH (e_value=1e-60) Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=1 SV=1;; (*TAIR) AT3G08760.1 (e_value=0.0) | Symbols: ATSIK | Protein kinase superfamily protein | chr3:2658129-2659984 REVERSE LENGTH=557;; (*ITAG) Solyc10g075040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58061308-58063925 transcript_region:SL2.40ch10:58061308..58063925- go_terms:GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00052717g0005.1 protein AED:0.17 eAED:0.17 QI:315|0.86|0.75|1|0.86|0.87|16|0|768; (*GB) gi|3806016|gb|AAC69177.1| (e_value=0.0) peroxisomal targeting signal 1 receptor [Nicotiana tabacum];; (*SWP) sp|Q9FMA3|PEX5_ARATH (e_value=0.0) Peroxisome biogenesis protein 5 OS=Arabidopsis thaliana GN=PEX5 PE=1 SV=1;; (*TAIR) AT5G56290.1 (e_value=0.0) | Symbols: PEX5, ATPEX5 | peroxin 5 | chr5:22786655-22791972 FORWARD LENGTH=728;; (*ITAG) Solyc10g005650.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:519710-532795 transcript_region:SL2.40ch10:519710..532795- go_terms:GO:0005052 functional_description:"Peroxisomal targeting signal 1 receptor (AHRD V1 **** Q9ZTK6_TOBAC); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005052 NbS00008602g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|298; (*GB) gi|10954033|gb|AAG25709.1|AF309514_1 (e_value=2e-153) class III acidic chitinase [Malus x domestica];; (*SWP) sp|P29060|CHIA_TOBAC (e_value=1e-128) Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT5G24090.1 (e_value=2e-120) | Symbols: ATCHIA, CHIA | chitinase A | chr5:8143805-8145153 REVERSE LENGTH=302;; (*ITAG) Solyc01g095250.1.1 (e_value=1e-176) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:78348443-78349339 transcript_region:SL2.40ch01:78348443..78349339+ go_terms:GO:0005975 functional_description:"Acidic chitinase (AHRD V1 ***- Q71HN4_FICAW); contains Interpro domain(s) IPR001223 Glycoside hydrolase, family 18, catalytic domain "; GO:0005975 NbS00014844g0110.1 protein AED:0.06 eAED:0.09 QI:39|1|0.33|1|0.5|0.66|3|0|623 NbS00014844g0114.1 protein AED:0.14 eAED:0.18 QI:0|0.71|0.62|1|0.85|0.75|8|117|635 NbS00014844g0112.1 protein AED:0.41 eAED:0.46 QI:0|0.25|0.2|1|0.75|0.8|5|53|174 NbS00011112g0006.1 protein AED:0.05 eAED:0.09 QI:0|0.8|0.66|1|1|1|6|0|469; (*GB) gi|147862095|emb|CAN80883.1| (e_value=4e-97) hypothetical protein VITISV_018652 [Vitis vinifera];; (*TAIR) AT5G12930.1 (e_value=1e-59) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4083155-4085222 REVERSE LENGTH=439;; (*ITAG) Solyc11g056640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:44980200-44984263 transcript_region:SL2.40ch11:44980200..44984263- functional_description:"Unknown Protein (AHRD V1)"; NbS00023657g0017.1 protein AED:0.14 eAED:0.16 QI:0|0.86|0.75|1|0.8|0.75|16|0|1534; (*GB) gi|225465817|ref|XP_002263469.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase KEG [Vitis vinifera];; (*SWP) sp|Q9FY48|KEG_ARATH (e_value=0.0) E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2;; (*TAIR) AT5G13530.1 (e_value=0.0) | Symbols: KEG | protein kinases;ubiquitin-protein ligases | chr5:4345618-4354369 FORWARD LENGTH=1625;; (*ITAG) Solyc01g096490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79324784-79340957 transcript_region:SL2.40ch01:79324784..79340957- go_terms:GO:0005515,GO:0004842 functional_description:"Kinase family protein (AHRD V1 *--- D7MA69_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0004842 NbS00023657g0016.1 protein AED:0.22 eAED:0.24 QI:333|1|0.8|1|0.77|0.5|10|0|759; (*GB) gi|57281695|dbj|BAD86587.1| (e_value=0.0) sphingosine kinase [Lotus japonicus];; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=0.0) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1 PE=1 SV=1;; (*TAIR) AT5G23450.2 (e_value=0.0) | Symbols: ATLCBK1, LCBK1 | long-chain base (LCB) kinase 1 | chr5:7905041-7908960 REVERSE LENGTH=763;; (*ITAG) Solyc01g096500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79343169-79351925 transcript_region:SL2.40ch01:79343169..79351925- go_terms:GO:0017050 functional_description:"D-erythro-sphingosine kinase (AHRD V1 *-** D7MES6_ARALY); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00023657g0007.1 protein AED:0.18 eAED:0.19 QI:0|0.66|0.5|1|0.66|0.5|4|252|367; (*GB) gi|224057262|ref|XP_002299199.1| (e_value=9e-75) predicted protein [Populus trichocarpa];; (*TAIR) AT3G54390.1 (e_value=2e-57) | Symbols: | sequence-specific DNA binding transcription factors | chr3:20137912-20138863 REVERSE LENGTH=296;; (*ITAG) Solyc01g096470.2.1 (e_value=8e-95) genomic_reference:SL2.40ch01 gene_region:79318480-79320749 transcript_region:SL2.40ch01:79318480..79320749+ go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* D7LUT4_ARALY)"; GO:0003700 NbS00023657g0014.1 protein AED:0.28 eAED:0.28 QI:130|1|1|1|1|1|4|306|181; (*GB) gi|46102539|gb|AAS80320.1| (e_value=4e-131) thioredoxin protein [Nicotiana benthamiana];; (*SWP) sp|Q9M7X9|CITRX_ARATH (e_value=4e-76) Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana GN=At3g06730 PE=1 SV=1;; (*TAIR) AT3G06730.1 (e_value=3e-77) | Symbols: TRX P, TRX z | Thioredoxin z | chr3:2124276-2125845 FORWARD LENGTH=183;; (*ITAG) Solyc01g096480.2.1 (e_value=3e-99) genomic_reference:SL2.40ch01 gene_region:79321007-79324434 transcript_region:SL2.40ch01:79321007..79324434+ go_terms:GO:0045454 functional_description:"Thioredoxin protein (AHRD V1 ***- Q6JE37_NICBE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00007477g0018.1 protein AED:0.13 eAED:0.13 QI:143|0.81|0.83|1|0.81|0.75|12|251|425; (*GB) gi|34329680|gb|AAQ63971.1| (e_value=0.0) unknown [Nicotiana benthamiana];; (*SWP) sp|Q9H9B1|EHMT1_HUMAN (e_value=2e-25) Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1 PE=1 SV=4;; (*TAIR) AT3G04710.3 (e_value=2e-168) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1276948-1280942 FORWARD LENGTH=680;; (*ITAG) Solyc01g097190.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79885940-79899140 transcript_region:SL2.40ch01:79885940..79899140+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein-like (AHRD V1 ***- Q6K268_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00007477g0012.1 protein AED:0.15 eAED:0.16 QI:0|1|0|1|1|1|2|0|129; (*GB) gi|255580915|ref|XP_002531276.1| (e_value=4e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G28690.1 (e_value=3e-32) | Symbols: | Protein of unknown function (DUF1685) | chr5:10723033-10723702 FORWARD LENGTH=192;; (*ITAG) Solyc01g097180.2.1 (e_value=9e-48) genomic_reference:SL2.40ch01 gene_region:79882439-79883709 transcript_region:SL2.40ch01:79882439..79883709+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00007477g0001.1 protein AED:0.20 eAED:0.27 QI:0|0.5|0|1|1|1|3|0|341; (*GB) gi|225449804|ref|XP_002275183.1| (e_value=3e-127) PREDICTED: uncharacterized protein LOC100264359 isoform 1 [Vitis vinifera];; (*TAIR) AT4G02550.3 (e_value=3e-113) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:1120622-1121674 REVERSE LENGTH=322;; (*ITAG) Solyc01g097250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79925577-79928989 transcript_region:SL2.40ch01:79925577..79928989- functional_description:"Genomic DNA chromosome 5 P1 clone MJJ3 (AHRD V1 *--- Q9FFJ8_ARATH)"; NbS00007477g0004.1 protein AED:0.37 eAED:0.37 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|225453012|ref|XP_002264376.1| (e_value=9e-59) PREDICTED: PRA1 family protein E [Vitis vinifera];; (*SWP) sp|Q9FRR1|PRA1E_ARATH (e_value=9e-38) PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1;; (*TAIR) AT1G08770.1 (e_value=7e-39) | Symbols: PRA1.E | prenylated RAB acceptor 1.E | chr1:2808933-2809562 FORWARD LENGTH=209;; (*ITAG) Solyc01g097230.2.1 (e_value=1e-44) genomic_reference:SL2.40ch01 gene_region:79921717-79922875 transcript_region:SL2.40ch01:79921717..79922875- functional_description:"PRA1 family protein E (AHRD V1 *-*- PRA1E_ARATH); contains Interpro domain(s) IPR004895 Prenylated rab acceptor PRA1 "; NbS00007477g0014.1 protein AED:0.36 eAED:0.52 QI:0|0|0.5|1|0|0|2|434|78 NbS00007477g0005.1 protein AED:0.36 eAED:0.96 QI:0|0|0.5|1|0|0.5|2|60|329 NbS00007477g0022.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0|0|2|0|155; (*GB) gi|89280682|ref|YP_514899.1| (e_value=1e-70) hypothetical protein LyesCp068 [Solanum lycopersicum];; (*SWP) sp|Q2MIC9|YCF1_SOLBU (e_value=5e-68) Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1;; (*ITAG) ATCG01130.1 (e_value=6e-60) | Symbols: YCF1.2 | Ycf1 protein | chrC:123884-129244 REVERSE LENGTH=1786;; (*ITAG) Solyc11g021310.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00007477g0015.1 protein AED:0.22 eAED:0.47 QI:0|0|0|1|0|0|2|0|86; (*GB) gi|19962|emb|CAA41437.1| (e_value=7e-25) pathogenesis-related protein 4A [Nicotiana tabacum];; (*SWP) sp|P29062|PR4A_TOBAC (e_value=2e-26) Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G04720.1 (e_value=2e-19) | Symbols: PR4, HEL, PR-4 | pathogenesis-related 4 | chr3:1285691-1286531 REVERSE LENGTH=212;; (*ITAG) Solyc01g097240.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:79922952-79924628 transcript_region:SL2.40ch01:79922952..79924628- go_terms:GO:0016998,GO:0050832 functional_description:"Pathogenesis-related protein 4B (Fragment) (AHRD V1 **-- Q6LBM4_TOBAC); contains Interpro domain(s) IPR018226 Barwin, conserved site IPR001153 Barwin "; GO:0016998,GO:0050832 NbS00021900g0005.1 protein AED:0.01 eAED:0.01 QI:472|1|1|1|1|1|3|400|403; (*GB) gi|296084504|emb|CBI25063.3| (e_value=2e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G22970.1 (e_value=3e-107) | Symbols: | Protein of unknown function (DUF506) | chr3:8152592-8153881 FORWARD LENGTH=370;; (*ITAG) Solyc09g065760.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59639649-59642438 transcript_region:SL2.40ch09:59639649..59642438+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6SS18_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00034658g0108.1 protein AED:0.04 eAED:0.04 QI:337|0.77|0.7|1|0.33|0.1|10|364|717 NbS00034658g0111.1 protein AED:0.12 eAED:0.30 QI:0|0|0|1|0|0|6|0|317 NbS00002226g0009.1 protein AED:0.48 eAED:0.57 QI:0|0|0|1|1|1|2|0|100; (*GB) gi|225449416|ref|XP_002282875.1| (e_value=1e-20) PREDICTED: tropinone reductase homolog At1g07440 [Vitis vinifera];; (*SWP) sp|P50165|TRNH_DATST (e_value=1e-16) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT2G29350.2 (e_value=1e-21) | Symbols: SAG13 | senescence-associated gene 13 | chr2:12601036-12601992 FORWARD LENGTH=225;; (*ITAG) Solyc06g083470.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:45158037-45159823 transcript_region:SL2.40ch06:45158037..45159823- go_terms:GO:0008152,GO:0055114 functional_description:"Tropinone reductase-like protein 16 (AHRD V1 **-- B2BXZ1_9BRAS); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00057808g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.33|0|0.33|3|0|272; (*GB) gi|47971182|dbj|BAD22533.1| (e_value=2e-110) harpin inducing protein 1-like 9 [Nicotiana tabacum];; (*SWP) sp|Q9C615|SYP24_ARATH (e_value=7e-29) Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1;; (*TAIR) AT3G11650.1 (e_value=8e-66) | Symbols: NHL2 | NDR1/HIN1-like 2 | chr3:3676264-3676986 REVERSE LENGTH=240;; (*ITAG) Solyc10g081980.1.1 (e_value=3e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62218431-62223520 transcript_region:SL2.40ch10:62218431..62223520+ functional_description:"Harpin-induced protein-like (Fragment) (AHRD V1 **-- D2CFH8_COFAR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00027555g0001.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|65 NbS00007352g0008.1 protein AED:0.17 eAED:0.17 QI:950|0.8|0.83|1|0.8|0.83|6|530|262; (*GB) gi|297741113|emb|CBI31844.3| (e_value=1e-114) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G52030.1 (e_value=5e-103) | Symbols: | TraB family protein | chr5:21128819-21130034 FORWARD LENGTH=258;; (*ITAG) Solyc03g026260.2.1 (e_value=5e-154) genomic_reference:SL2.40ch03 gene_region:8081847-8084677 transcript_region:SL2.40ch03:8081847..8084677- functional_description:"TraB family protein (AHRD V1 *-*- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00000143g0003.1 protein AED:0.00 eAED:0.01 QI:0|1|0|1|1|1|2|0|332; (*GB) gi|147776896|emb|CAN63558.1| (e_value=4e-36) hypothetical protein VITISV_034122 [Vitis vinifera];; (*TAIR) AT3G15115.1 (e_value=3e-11) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53180.1); Has 47 Blast hits to 47 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:5086219-5087352 REVERSE LENGTH=339;; (*ITAG) Solyc07g062740.2.1 (e_value=1e-154) genomic_reference:SL2.40ch07 gene_region:62659720-62662289 transcript_region:SL2.40ch07:62659720..62662289- functional_description:"Unknown Protein (AHRD V1)"; NbS00005482g0006.1 protein AED:0.13 eAED:0.13 QI:0|0.90|0.83|1|0.81|0.91|12|285|637; (*GB) gi|359489584|ref|XP_002264072.2| (e_value=0.0) PREDICTED: auxin response factor 18-like [Vitis vinifera];; (*SWP) sp|Q9C5W9|ARFR_ARATH (e_value=0.0) Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1;; (*TAIR) AT3G61830.1 (e_value=0.0) | Symbols: ARF18 | auxin response factor 18 | chr3:22888171-22891179 FORWARD LENGTH=602;; (*ITAG) Solyc01g096070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78941748-78946012 transcript_region:SL2.40ch01:78941748..78946012+ go_terms:GO:0003700,GO:0008022 functional_description:"Auxin response factor 9 (AHRD V1 **** D7R605_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0003700,GO:0008022 NbS00014790g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0.5|2|296|240; (*GB) gi|255538662|ref|XP_002510396.1| (e_value=7e-94) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q92383|MAG1_SCHPO (e_value=3e-19) DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1;; (*TAIR) AT1G75230.2 (e_value=6e-90) | Symbols: | DNA glycosylase superfamily protein | chr1:28234444-28235628 FORWARD LENGTH=394;; (*ITAG) Solyc04g080470.2.1 (e_value=5e-120) genomic_reference:SL2.40ch04 gene_region:62236180-62240090 transcript_region:SL2.40ch04:62236180..62240090+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase 1 (AHRD V1 ***- B6U6Y8_MAIZE); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00014790g0003.1 protein AED:0.45 eAED:0.54 QI:0|0|0.33|0.66|0|0.33|3|50|103 NbS00014790g0104.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|761 NbS00014790g0118.1 protein AED:0.14 eAED:0.14 QI:717|1|1|1|1|1|2|143|294 NbS00014790g0123.1 protein AED:0.15 eAED:0.15 QI:0|0.2|0.16|1|0|0|6|0|329 NbS00014790g0122.1 protein AED:0.21 eAED:0.21 QI:100|0.66|1|1|0.66|0.5|4|220|170 NbS00014790g0102.1 protein AED:0.40 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|92 NbS00007258g0010.1 protein AED:0.25 eAED:0.25 QI:64|0.9|0.90|1|0.8|0.81|11|300|382; (*GB) gi|225447779|ref|XP_002265691.1| (e_value=4e-101) PREDICTED: uncharacterized protein LOC100245237 [Vitis vinifera];; (*TAIR) AT1G15200.1 (e_value=1e-78) | Symbols: | protein-protein interaction regulator family protein | chr1:5228477-5231017 REVERSE LENGTH=423;; (*ITAG) Solyc01g104560.2.1 (e_value=9e-149) genomic_reference:SL2.40ch01 gene_region:84787175-84791575 transcript_region:SL2.40ch01:84787175..84791575+ functional_description:"Pinin/SDK/memA protein (AHRD V1 ***- A2Q483_MEDTR); contains Interpro domain(s) IPR006786 Pinin/SDK/memA protein "; NbS00032539g0003.1 protein AED:0.07 eAED:0.07 QI:69|1|0.66|1|1|1|3|0|397; (*GB) gi|225426558|ref|XP_002279545.1| (e_value=9e-127) PREDICTED: NAC domain-containing protein 43-like [Vitis vinifera];; (*SWP) sp|Q84WP6|NAC43_ARATH (e_value=7e-104) NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2;; (*TAIR) AT2G46770.1 (e_value=5e-105) | Symbols: NST1, ANAC043 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr2:19220917-19222822 REVERSE LENGTH=365;; (*ITAG) Solyc08g008660.2.1 (e_value=3e-114) genomic_reference:SL2.40ch08 gene_region:3025338-3026965 transcript_region:SL2.40ch08:3025338..3026965- go_terms:GO:0016563 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- A9PDI0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0016563 NbS00038395g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.75|1|0.66|0.5|4|452|510; (*GB) gi|297738116|emb|CBI27317.3| (e_value=3e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=5e-52) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=4e-53) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc05g012040.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5268986-5273711 transcript_region:SL2.40ch05:5268986..5273711+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00016988g0004.1 protein AED:0.37 eAED:0.37 QI:145|1|1|1|0.91|0.84|13|267|430; (*GB) gi|1097877|prf||2114378A (e_value=0.0) aminolevulinate dehydratase;; (*SWP) sp|Q9SFH9|HEM2_ARATH (e_value=0.0) Delta-aminolevulinic acid dehydratase, chloroplastic OS=Arabidopsis thaliana GN=HEMB PE=1 SV=1;; (*TAIR) AT1G69740.2 (e_value=0.0) | Symbols: HEMB1 | Aldolase superfamily protein | chr1:26232197-26234713 FORWARD LENGTH=430;; (*ITAG) Solyc08g069030.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55322764-55332861 transcript_region:SL2.40ch08:55322764..55332861+ go_terms:GO:0042802,GO:0004655 functional_description:"Delta-aminolevulinic acid dehydratase (AHRD V1 ***- B9RJ27_RICCO); contains Interpro domain(s) IPR001731 Tetrapyrrole biosynthesis, porphobilinogen synthase "; GO:0042802,GO:0004655 NbS00024013g0004.1 protein AED:0.14 eAED:0.14 QI:0|0.8|0.75|1|0.93|0.93|16|0|1120; (*GB) gi|359484309|ref|XP_003633096.1| (e_value=0.0) PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=0.0) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT5G56890.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23010801-23015559 REVERSE LENGTH=1113;; (*ITAG) Solyc07g039340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:44498149-44505406 transcript_region:SL2.40ch07:44498149..44505406- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00044853g0003.1 protein AED:0.39 eAED:0.39 QI:75|0.2|0.18|0.36|0.8|0.72|11|0|306; (*GB) gi|296090386|emb|CBI40205.3| (e_value=2e-114) unnamed protein product [Vitis vinifera];; (*SWP) sp|A6QLT2|MTMR2_BOVIN (e_value=3e-22) Myotubularin-related protein 2 OS=Bos taurus GN=MTMR2 PE=2 SV=1;; (*TAIR) AT3G10550.1 (e_value=1e-106) | Symbols: MTM1, AtMTM1 | Myotubularin-like phosphatases II superfamily | chr3:3293210-3298452 REVERSE LENGTH=840;; (*ITAG) Solyc11g007670.1.1 (e_value=2e-141) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1895693-1910228 transcript_region:SL2.40ch11:1895693..1910228+ go_terms:GO:0016311 functional_description:"Myotubularin-related protein 2 (AHRD V1 ***- C0H903_SALSA); contains Interpro domain(s) IPR010569 Myotubularin-related "; GO:0016311 NbS00058856g0002.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0|0.66|1|1|3|0|73; (*GB) gi|175363751|gb|ACB72462.1| (e_value=4e-31) elongation factor 1 gamma-like protein [Nicotiana tabacum];; (*SWP) sp|Q6YW46|EF1G2_ORYSJ (e_value=1e-30) Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2;; (*TAIR) AT1G57720.2 (e_value=4e-26) | Symbols: | Translation elongation factor EF1B, gamma chain | chr1:21377873-21380114 FORWARD LENGTH=413;; (*ITAG) Solyc06g011280.2.1 (e_value=1e-29) genomic_reference:SL2.40ch06 gene_region:6257892-6260968 transcript_region:SL2.40ch06:6257892..6260968- go_terms:GO:0003713,GO:0005507 functional_description:"Elongation factor 1-gamma (AHRD V1 ***- B7SDI2_ORYSJ); contains Interpro domain(s) IPR001662 Translation elongation factor EF1B, gamma chain, conserved "; GO:0003713,GO:0005507 NbS00006077g0001.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|186|450; (*GB) gi|209954687|dbj|BAG80534.1| (e_value=0.0) putative glycosyltransferase [Lycium barbarum];; (*SWP) sp|Q9SYK9|U74E2_ARATH (e_value=3e-131) UDP-glycosyltransferase 74E2 OS=Arabidopsis thaliana GN=UGT74E2 PE=1 SV=1;; (*TAIR) AT1G05680.1 (e_value=2e-132) | Symbols: UGT74E2 | Uridine diphosphate glycosyltransferase 74E2 | chr1:1703196-1704639 REVERSE LENGTH=453;; (*ITAG) Solyc12g096830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63929227-63931184 transcript_region:SL2.40ch12:63929227..63931184+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI44_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00006077g0118.1 protein AED:0.36 eAED:0.38 QI:0|0|0|1|1|1|3|0|288 NbS00006077g0110.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|129 NbS00006077g0115.1 protein AED:0.31 eAED:0.48 QI:30|1|0.5|1|0|0.5|2|0|165 NbS00006077g0117.1 protein AED:0.28 eAED:0.57 QI:0|0|0|1|0|0.5|2|0|166 NbS00006077g0119.1 protein AED:0.60 eAED:1.00 QI:0|0|0|0.5|0|0.5|2|0|78 NbS00006077g0116.1 protein AED:0.42 eAED:0.45 QI:0|0|0|0.5|0|0|2|0|72 NbS00007881g0005.1 protein AED:0.36 eAED:0.36 QI:0|0.6|0.5|1|0.6|0.66|6|238|344; (*GB) gi|356500433|ref|XP_003519036.1| (e_value=0.0) PREDICTED: solute carrier family 35 member B1-like [Glycine max];; (*SWP) sp|Q9M9S6|UTR3_ARATH (e_value=0.0) UDP-galactose/UDP-glucose transporter 3 OS=Arabidopsis thaliana GN=UTR3 PE=1 SV=1;; (*TAIR) AT1G14360.1 (e_value=0.0) | Symbols: ATUTR3, UTR3 | UDP-galactose transporter 3 | chr1:4911362-4913029 REVERSE LENGTH=331;; (*ITAG) Solyc01g010650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:5655290-5660901 transcript_region:SL2.40ch01:5655290..5660901- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 3 (AHRD V1 **** D7KBJ4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00033984g0006.1 protein AED:0.25 eAED:0.29 QI:0|0|0|1|0|0|4|0|290; (*GB) gi|53749448|gb|AAU90304.1| (e_value=8e-25) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc03g093100.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00015384g0011.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0.33|0.25|4|0|674; (*GB) gi|118153959|gb|ABK63970.1| (e_value=0.0) PT5 [Nicotiana tabacum];; (*SWP) sp|Q94DB8|PT111_ORYSJ (e_value=0.0) Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g051860.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:32059398-32060987 transcript_region:SL2.40ch06:32059398..32060987- go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter 6 (AHRD V1 **** Q5CC71_MAIZE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00015384g0012.1 protein AED:0.34 eAED:0.35 QI:0|0|0|1|0|0.5|2|0|338; (*GB) gi|118153939|gb|ABK63967.1| (e_value=0.0) PT4 [Nicotiana tabacum];; (*SWP) sp|Q94DB8|PT111_ORYSJ (e_value=4e-148) Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1;; (*TAIR) AT3G54700.1 (e_value=6e-112) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g051850.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:32056126-32057763 transcript_region:SL2.40ch06:32056126..32057763- go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter 6 (AHRD V1 **** Q5CC71_MAIZE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005315 NbS00015384g0010.1 protein AED:0.05 eAED:0.05 QI:112|1|1|1|0.9|0.81|11|293|545; (*GB) gi|325516272|gb|ADZ24714.1| (e_value=0.0) folylpolyglutamate synthase [Solanum pennellii];; (*SWP) sp|Q05865|FOLC_BACSU (e_value=5e-46) Folylpolyglutamate synthase OS=Bacillus subtilis (strain 168) GN=folC PE=3 SV=2;; (*TAIR) AT5G41480.1 (e_value=1e-177) | Symbols: EMB9, GLA1, ATDFA, DFA | Folylpolyglutamate synthetase family protein | chr5:16595967-16598523 FORWARD LENGTH=530;; (*ITAG) Solyc06g051900.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32070495-32076487 transcript_region:SL2.40ch06:32070495..32076487+ go_terms:GO:0008841 functional_description:"Bifunctional folylpolyglutamate synthase dihydrofolate synthase folC (AHRD V1 *--* C4RPC7_9ACTO); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0008841 NbS00030221g0008.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.66|1|0.8|0.83|6|0|339; (*GB) gi|356501904|ref|XP_003519763.1| (e_value=1e-136) PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max];; (*SWP) sp|Q6GMI9|UXS1_DANRE (e_value=3e-71) UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2;; (*TAIR) AT2G47650.1 (e_value=2e-116) | Symbols: UXS4 | UDP-xylose synthase 4 | chr2:19538751-19541364 REVERSE LENGTH=443;; (*ITAG) Solyc10g085920.1.1 (e_value=4e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64259534-64264315 transcript_region:SL2.40ch10:64259534..64264315- go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_KLEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00030221g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|1|1|2|0|145; (*GB) gi|359483216|ref|XP_002268455.2| (e_value=9e-43) PREDICTED: 7-dehydrocholesterol reductase-like [Vitis vinifera];; (*TAIR) AT1G16810.2 (e_value=3e-32) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:5756150-5756694 FORWARD LENGTH=144;; (*ITAG) Solyc12g099490.1.1 (e_value=9e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64963131-64965271 transcript_region:SL2.40ch12:64963131..64965271+ functional_description:"FAM32A protein (AHRD V1 *-*- A6QR31_BOVIN); contains Interpro domain(s) IPR013865 Protein of unknown function DUF1754, eukaryotic "; NbS00003473g0006.1 protein AED:0.00 eAED:0.00 QI:99|1|0.33|1|0|0.66|3|0|301; (*GB) gi|224130336|ref|XP_002320812.1| (e_value=8e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g070700.1.1 (e_value=3e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:34937075-34938380 transcript_region:SL2.40ch02:34937075..34938380+ functional_description:"HMG-I and HMG-Y DNA-binding (AHRD V1 *-*- Q2HW76_MEDTR); contains Interpro domain(s) IPR014977 WRC "; NbS00050471g0003.1 protein AED:0.00 eAED:0.00 QI:0|1|0.66|1|1|1|3|0|883; (*GB) gi|225441327|ref|XP_002276357.1| (e_value=0.0) PREDICTED: triacylglycerol lipase SDP1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LZA6|SDP1_ARATH (e_value=0.0) Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1;; (*TAIR) AT5G04040.1 (e_value=0.0) | Symbols: SDP1 | Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825;; (*ITAG) Solyc10g079410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60273615-60276422 transcript_region:SL2.40ch10:60273615..60276422+ go_terms:GO:0006629,GO:0008152,GO:0005525 functional_description:"Patatin-like phospholipase domain-containing protein c (AHRD V1 *--- B6K1H8_SCHJY); contains Interpro domain(s) IPR006689 ARF/SAR superfamily "; GO:0006629,GO:0008152,GO:0005525 NbS00000695g0205.1 protein AED:0.02 eAED:0.02 QI:0|0|0|0.5|1|1|2|0|268 NbS00008490g0001.1 protein AED:0.73 eAED:0.89 QI:0|0|0.2|0.4|1|1|5|7|137 NbS00022347g0006.1 protein AED:0.31 eAED:0.31 QI:81|1|1|1|0.75|0.8|5|394|203; (*GB) gi|359483448|ref|XP_002273080.2| (e_value=2e-92) PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Vitis vinifera];; (*SWP) sp|Q9ZVN4|Y1500_ARATH (e_value=7e-91) Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1;; (*TAIR) AT1G05000.1 (e_value=5e-92) | Symbols: | Phosphotyrosine protein phosphatases superfamily protein | chr1:1425660-1428393 FORWARD LENGTH=215;; (*ITAG) Solyc11g011970.1.1 (e_value=1e-123) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4921104-4924448 transcript_region:SL2.40ch11:4921104..4924448- go_terms:GO:0016311 functional_description:"Tyrosine phosphatase family protein (AHRD V1 ***- B8N9Z8_ASPFN); contains Interpro domain(s) IPR020428 Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic "; GO:0016311 NbS00008076g0122.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|232 NbS00008076g0117.1 protein AED:0.10 eAED:0.10 QI:146|1|1|1|0.5|0.33|3|362|131 NbS00008076g0102.1 protein AED:0.11 eAED:0.13 QI:696|0.5|0.66|1|0|0.33|3|0|658 NbS00008076g0105.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|152 NbS00008076g0120.1 protein AED:0.35 eAED:0.35 QI:304|1|0.88|1|1|1|9|0|302 NbS00035849g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|225448164|ref|XP_002264141.1| (e_value=4e-127) PREDICTED: serine/threonine-protein kinase-like protein At5g23170-like [Vitis vinifera];; (*SWP) sp|Q9FMY3|STPKL_ARATH (e_value=2e-79) Serine/threonine-protein kinase-like protein At5g23170 OS=Arabidopsis thaliana GN=At5g23170 PE=2 SV=1;; (*TAIR) AT5G23170.1 (e_value=1e-80) | Symbols: | Protein kinase superfamily protein | chr5:7798411-7799436 REVERSE LENGTH=341;; (*ITAG) Solyc01g088050.2.1 (e_value=9e-81) genomic_reference:SL2.40ch01 gene_region:74660522-74662433 transcript_region:SL2.40ch01:74660522..74662433+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 **** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00001181g0016.1 protein AED:0.07 eAED:0.15 QI:0|0.6|0.5|1|0.4|0.66|6|0|301; (*GB) gi|147810158|emb|CAN71456.1| (e_value=4e-151) hypothetical protein VITISV_036419 [Vitis vinifera];; (*SWP) sp|Q08237|REXO4_YEAST (e_value=6e-18) RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1;; (*TAIR) AT3G27970.1 (e_value=1e-130) | Symbols: | Exonuclease family protein | chr3:10389609-10391544 FORWARD LENGTH=357;; (*ITAG) Solyc02g086850.1.1 (e_value=3e-167) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44036807-44039072 transcript_region:SL2.40ch02:44036807..44039072+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- B6T4V3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00001181g0011.1 protein AED:0.10 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|223; (*GB) gi|359488847|ref|XP_003633831.1| (e_value=2e-45) PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Vitis vinifera];; (*SWP) sp|Q9XF63|ATL3_ARATH (e_value=1e-17) RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2 SV=1;; (*TAIR) AT1G72310.1 (e_value=8e-19) | Symbols: ATL3 | RING/U-box superfamily protein | chr1:27226405-27227379 FORWARD LENGTH=324;; (*ITAG) Solyc02g067700.1.1 (e_value=3e-74) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:32407363-32407875 transcript_region:SL2.40ch02:32407363..32407875- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001181g0015.1 protein AED:0.03 eAED:0.03 QI:140|1|0.93|1|1|0.93|15|458|1573; (*GB) gi|255552654|ref|XP_002517370.1| (e_value=0.0) DNA-repair protein UVH3, putative [Ricinus communis];; (*SWP) sp|Q9ATY5|UVH3_ARATH (e_value=0.0) DNA repair protein UVH3 OS=Arabidopsis thaliana GN=UVH3 PE=2 SV=1;; (*TAIR) AT3G28030.1 (e_value=0.0) | Symbols: UVH3, UVR1 | 5'-3' exonuclease family protein | chr3:10424321-10431178 FORWARD LENGTH=1479;; (*ITAG) Solyc02g067670.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32380751-32389941 transcript_region:SL2.40ch02:32380751..32389941+ go_terms:GO:0005515,GO:0004518 functional_description:"Flap structure-specific endonuclease (AHRD V1 *--- A8NTE4_COPC7); contains Interpro domain(s) IPR001044 Xeroderma pigmentosum group G protein "; GO:0005515,GO:0004518 NbS00001181g0001.1 protein AED:0.13 eAED:0.14 QI:231|1|0.5|1|0|0|2|0|364; (*GB) gi|147860397|emb|CAN80445.1| (e_value=3e-107) hypothetical protein VITISV_043284 [Vitis vinifera];; (*SWP) sp|Q9FL07|ATL46_ARATH (e_value=2e-93) RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1;; (*TAIR) AT5G40250.1 (e_value=1e-94) | Symbols: | RING/U-box superfamily protein | chr5:16086056-16087186 FORWARD LENGTH=376;; (*ITAG) Solyc02g067680.1.1 (e_value=5e-159) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32391618-32392706 transcript_region:SL2.40ch02:32391618..32392706+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 ***- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00048569g0005.1 protein AED:0.21 eAED:0.21 QI:190|0.66|0.7|1|0.77|0.7|10|743|230; (*GB) gi|350536613|ref|NP_001234511.1| (e_value=1e-130) plastid quinol oxidase [Solanum lycopersicum];; (*SWP) sp|Q56X52|AOX4_ARATH (e_value=3e-82) Alternative oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2;; (*TAIR) AT4G22260.1 (e_value=2e-83) | Symbols: IM, IM1 | Alternative oxidase family protein | chr4:11769967-11772350 REVERSE LENGTH=351;; (*ITAG) Solyc11g011990.1.1 (e_value=2e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4937989-4942674 transcript_region:SL2.40ch11:4937989..4942674- go_terms:GO:0009916 functional_description:"Plastid terminal oxydase"; GO:0009916 NbS00029983g0001.1 protein AED:0.22 eAED:0.23 QI:374|0.8|0.66|1|0.8|0.66|6|0|528; (*GB) gi|224121980|ref|XP_002330701.1| (e_value=3e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LPG9|IQD14_ARATH (e_value=5e-58) Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1;; (*TAIR) AT3G59690.1 (e_value=3e-67) | Symbols: IQD13 | IQ-domain 13 | chr3:22049572-22051479 FORWARD LENGTH=517;; (*ITAG) Solyc06g053450.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32744659-32751251 transcript_region:SL2.40ch06:32744659..32751251+ go_terms:GO:0005516 functional_description:"IQ-domain 10 (Fragment) (AHRD V1 *--- D7L3Y4_ARALY); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00012058g0007.1 protein AED:0.19 eAED:0.19 QI:332|0.8|0.81|1|1|1|11|412|562; (*GB) gi|224099221|ref|XP_002311408.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY65|NIK2_ARATH (e_value=0.0) Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1;; (*TAIR) AT3G25560.1 (e_value=0.0) | Symbols: NIK2 | NSP-interacting kinase 2 | chr3:9279682-9282560 REVERSE LENGTH=635;; (*ITAG) Solyc05g010400.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4633321-4637619 transcript_region:SL2.40ch05:4633321..4637619- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00012058g0008.1 protein AED:0.12 eAED:0.12 QI:22|0.5|0|0.8|0.25|0.2|5|0|371; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=7e-40) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=5e-41) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc11g011540.1.1 (e_value=2e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020848g0001.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|1|1|2|0|388; (*GB) gi|359476142|ref|XP_002282775.2| (e_value=2e-87) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=2e-48) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=1e-49) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc06g068210.1.1 (e_value=3e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38646008-38648236 transcript_region:SL2.40ch06:38646008..38648236- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 8 (AHRD V1 ***- FRS8_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00027096g0003.1 protein AED:0.19 eAED:0.19 QI:32|1|1|1|0|0.5|2|220|103; (*GB) gi|255553907|ref|XP_002517994.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc07g054710.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:60263201-60263599 transcript_region:SL2.40ch07:60263201..60263599- functional_description:"AM15 (AHRD V1 *-*- D0UTL7_ORYSJ)"; NbS00027096g0004.1 protein AED:0.36 eAED:0.36 QI:0|1|0.5|1|0|0.5|2|0|94; (*ITAG) Solyc07g054700.2.1 (e_value=4e-35) genomic_reference:SL2.40ch07 gene_region:60260140-60260813 transcript_region:SL2.40ch07:60260140..60260813- functional_description:"Unknown Protein (AHRD V1)"; NbS00000119g0008.1 protein AED:0.19 eAED:0.22 QI:0|0.76|0.72|1|0.80|0.86|22|745|833; (*GB) gi|297734460|emb|CBI15707.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8BMD7|MORC4_MOUSE (e_value=1e-46) MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2;; (*TAIR) AT4G24970.1 (e_value=0.0) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc03g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53302012-53315859 transcript_region:SL2.40ch03:53302012..53315859+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger protein 4 (AHRD V1 *--- A1YR23_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00000119g0007.1 protein AED:0.08 eAED:0.09 QI:0|0.5|0|0.66|1|1|3|0|193; (*GB) gi|356508837|ref|XP_003523160.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100790055 [Glycine max];; (*TAIR) AT4G24972.1 (e_value=2e-43) | Symbols: TPD1 | tapetum determinant 1 | chr4:12838220-12839619 FORWARD LENGTH=176;; (*ITAG) Solyc03g097530.2.1 (e_value=2e-96) genomic_reference:SL2.40ch03 gene_region:53316846-53318908 transcript_region:SL2.40ch03:53316846..53318908- functional_description:"TPD1 (AHRD V1 ***- Q6TLJ2_ARATH)"; NbS00019882g0002.1 protein AED:0.37 eAED:0.39 QI:0|0|0|1|0|0|3|0|110; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-28) hypothetical protein [Nicotiana tabacum]; NbS00037674g0002.1 protein AED:0.08 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|506; (*GB) gi|350536665|ref|NP_001234514.1| (e_value=0.0) sterol 22-desaturase [Solanum lycopersicum];; (*SWP) sp|O64697|C7101_ARATH (e_value=0.0) Cytochrome P450 710A1 OS=Arabidopsis thaliana GN=CYP710A1 PE=1 SV=1;; (*TAIR) AT2G34500.1 (e_value=0.0) | Symbols: CYP710A1 | cytochrome P450, family 710, subfamily A, polypeptide 1 | chr2:14539712-14541199 REVERSE LENGTH=495;; (*ITAG) Solyc02g070580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34885987-34887492 transcript_region:SL2.40ch02:34885987..34887492+ go_terms:GO:0019825,GO:0000249 functional_description:"Cytochrome p450"; GO:0019825,GO:0000249 NbS00037674g0012.1 protein AED:0.11 eAED:0.11 QI:140|1|1|1|0.8|0.83|6|403|150; (*GB) gi|82623419|gb|ABB87124.1| (e_value=4e-85) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q9CAX6|RS142_ARATH (e_value=3e-80) 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1;; (*TAIR) AT3G11510.1 (e_value=2e-81) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=7e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00037674g0016.1 protein AED:0.25 eAED:0.25 QI:345|0.75|0.77|1|0.62|0.66|9|336|551; (*GB) gi|225463476|ref|XP_002273074.1| (e_value=0.0) PREDICTED: phospho-N-acetylmuramoyl-pentapeptide-transferase homolog [Vitis vinifera];; (*SWP) sp|O49730|MRAY_ARATH (e_value=3e-123) Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog OS=Arabidopsis thaliana GN=ATTRANS 11 PE=2 SV=3;; (*TAIR) AT4G18270.1 (e_value=2e-124) | Symbols: ATTRANS11, TRANS11 | translocase 11 | chr4:10099364-10101897 REVERSE LENGTH=480;; (*ITAG) Solyc02g070560.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34876652-34881371 transcript_region:SL2.40ch02:34876652..34881371+ go_terms:GO:0003824,GO:0015450 functional_description:"Phospho-N-acetylmuramoyl-pentapeptide-transferase (AHRD V1 ***- A0ZB89_NODSP); contains Interpro domain(s) IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase "; GO:0003824,GO:0015450 NbS00037674g0017.1 protein AED:0.28 eAED:0.28 QI:257|0.90|0.91|1|0.81|0.75|12|758|373; (*GB) gi|359483861|ref|XP_002276730.2| (e_value=7e-123) PREDICTED: la-related protein 6-like [Vitis vinifera];; (*SWP) sp|Q9BRS8|LARP6_HUMAN (e_value=6e-24) La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1;; (*TAIR) AT5G46250.1 (e_value=1e-98) | Symbols: | RNA-binding protein | chr5:18755388-18758056 FORWARD LENGTH=422;; (*ITAG) Solyc02g070550.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34870137-34875497 transcript_region:SL2.40ch02:34870137..34875497+ go_terms:GO:0005515 functional_description:"La-related protein 6 (AHRD V1 *--- LARP6_HUMAN); contains Interpro domain(s) IPR006630 RNA-binding protein Lupus La "; GO:0005515 NbS00012508g0012.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|142; (*ITAG) Solyc07g064210.2.1 (e_value=5e-45) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00012508g0005.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|177; (*GB) gi|371539268|gb|AEL17349.2| (e_value=3e-34) TCP2 [Petunia x hybrida];; (*SWP) sp|Q9SBV6|CYCLD_ANTML (e_value=4e-28) Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum majus subsp. linkianum GN=CYC PE=3 SV=1;; (*TAIR) AT1G68800.1 (e_value=5e-23) | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr1:25847306-25848471 REVERSE LENGTH=356;; (*ITAG) Solyc03g045030.1.1 (e_value=6e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:15326821-15327672 transcript_region:SL2.40ch03:15326821..15327672- functional_description:"CYCLOIDEA-like protein (Fragment) (AHRD V1 ***- Q84RA7_9LAMI); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00012508g0011.1 protein AED:0.18 eAED:0.18 QI:126|1|1|1|1|1|4|249|141; (*GB) gi|225451958|ref|XP_002283197.1| (e_value=6e-78) PREDICTED: cyclin-B1-2 [Vitis vinifera];; (*SWP) sp|Q0DWQ7|CCB12_ORYSJ (e_value=2e-25) Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1;; (*TAIR) AT1G67250.1 (e_value=4e-75) | Symbols: | Proteasome maturation factor UMP1 | chr1:25163808-25164967 REVERSE LENGTH=141;; (*ITAG) Solyc02g089820.2.1 (e_value=4e-88) genomic_reference:SL2.40ch02 gene_region:46089148-46092029 transcript_region:SL2.40ch02:46089148..46092029- go_terms:GO:0005515 functional_description:"Proteasome maturation protein (AHRD V1 ***- A5HKJ3_RAT); contains Interpro domain(s) IPR008012 Proteasome maturation factor UMP1 "; GO:0005515 NbS00015483g0006.1 protein AED:0.17 eAED:0.21 QI:72|0.63|0.7|0.9|0.42|0.55|20|143|634; (*GB) gi|359494635|ref|XP_002264188.2| (e_value=2e-116) PREDICTED: putative cyclin-B3-1-like [Vitis vinifera];; (*SWP) sp|Q9SA32|CCB31_ARATH (e_value=3e-98) Putative cyclin-B3-1 OS=Arabidopsis thaliana GN=CYCB3-1 PE=3 SV=2;; (*TAIR) AT1G16330.1 (e_value=2e-99) | Symbols: CYCB3;1 | cyclin b3;1 | chr1:5582387-5587391 REVERSE LENGTH=648;; (*ITAG) Solyc07g066660.2.1 (e_value=2e-173) genomic_reference:SL2.40ch07 gene_region:65246054-65259212 transcript_region:SL2.40ch07:65246054..65259212+ go_terms:GO:0005634 functional_description:"Cyclin B2 (AHRD V1 *-*- B6TRI7_MAIZE); contains Interpro domain(s) IPR006671 Cyclin, N-terminal "; GO:0005634 NbS00015483g0002.1 protein AED:0.80 eAED:0.81 QI:0|0|0|0.5|1|1|4|0|78; (*GB) gi|227462435|gb|ABI49160.2| (e_value=3e-32) SM10-1 [Nicotiana tabacum];; (*TAIR) AT3G12760.1 (e_value=8e-20) | Symbols: | CONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). | chr3:4054963-4056826 FORWARD LENGTH=250;; (*ITAG) Solyc07g066650.2.1 (e_value=4e-33) genomic_reference:SL2.40ch07 gene_region:65228371-65238555 transcript_region:SL2.40ch07:65228371..65238555- go_terms:GO:0043130 functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; GO:0043130 NbS00026500g0005.1 protein AED:0.29 eAED:0.29 QI:0|0.55|0.5|1|0.33|0.4|10|22|307; (*GB) gi|358249088|ref|NP_001239735.1| (e_value=3e-78) uncharacterized protein LOC100795925 [Glycine max];; (*TAIR) AT3G24315.1 (e_value=2e-70) | Symbols: AtSec20 | Sec20 family protein | chr3:8820599-8822445 REVERSE LENGTH=293;; (*ITAG) Solyc09g090860.2.1 (e_value=5e-113) genomic_reference:SL2.40ch09 gene_region:65598396-65603568 transcript_region:SL2.40ch09:65598396..65603568- functional_description:"Sec20 family protein (AHRD V1 ***- D7L520_ARALY); contains Interpro domain(s) IPR005606 Sec20 "; NbS00014324g0006.1 protein AED:0.12 eAED:0.16 QI:0|0.75|0.55|0.88|1|1|9|549|293; (*GB) gi|225463764|ref|XP_002267286.1| (e_value=4e-139) PREDICTED: probable protein arginine N-methyltransferase 6-like [Vitis vinifera];; (*SWP) sp|Q08A71|ANM6_ARATH (e_value=2e-135) Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1;; (*TAIR) AT3G20020.1 (e_value=2e-136) | Symbols: ATPRMT6, PRMT6 | protein arginine methyltransferase 6 | chr3:6984055-6987945 REVERSE LENGTH=435;; (*ITAG) Solyc04g008860.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:2475731-2485874 transcript_region:SL2.40ch04:2475731..2485874- go_terms:GO:0035242 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 **** D7LAV3_ARALY); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00034172g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|296278604|gb|ADH04266.1| (e_value=4e-43) ERF1 [Nicotiana benthamiana];; (*SWP) sp|Q8L9K1|ERF99_ARATH (e_value=9e-43) Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2;; (*TAIR) AT2G44840.1 (e_value=7e-44) | Symbols: ATERF13, EREBP, ERF13 | ethylene-responsive element binding factor 13 | chr2:18495440-18496120 FORWARD LENGTH=226;; (*ITAG) Solyc01g090300.2.1 (e_value=6e-67) genomic_reference:SL2.40ch01 gene_region:75727780-75728496 transcript_region:SL2.40ch01:75727780..75728496+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 1b (AHRD V1 *-*- C0J9I8_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00034172g0012.1 protein AED:0.43 eAED:0.43 QI:0|0.71|0.87|0.87|0.57|0.87|8|0|272; (*GB) gi|225453392|ref|XP_002273686.1| (e_value=2e-117) PREDICTED: COP9 signalosome complex subunit 7 isoform 1 [Vitis vinifera];; (*SWP) sp|Q94JU3|CSN7_ARATH (e_value=2e-102) COP9 signalosome complex subunit 7 OS=Arabidopsis thaliana GN=CSN7 PE=1 SV=1;; (*TAIR) AT1G02090.1 (e_value=2e-103) | Symbols: FUS5, CSN7, COP15, ATCSN7 | Proteasome component (PCI) domain protein | chr1:387479-389568 REVERSE LENGTH=260;; (*ITAG) Solyc01g090290.2.1 (e_value=2e-134) genomic_reference:SL2.40ch01 gene_region:75716147-75725527 transcript_region:SL2.40ch01:75716147..75725527+ go_terms:GO:0005515 functional_description:"COP9 signalosome complex subunit 7 (AHRD V1 ***- B4F8L1_MAIZE); contains Interpro domain(s) IPR000717 Proteasome component region PCI "; GO:0005515 NbS00006249g0014.1 protein AED:0.20 eAED:0.20 QI:0|0.92|0.93|1|0.82|0.86|29|274|972; (*GB) gi|225430656|ref|XP_002270163.1| (e_value=0.0) PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Vitis vinifera];; (*SWP) sp|Q9M8Y0|SEC_ARATH (e_value=0.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1;; (*TAIR) AT3G04240.1 (e_value=0.0) | Symbols: SEC | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1114187-1120722 REVERSE LENGTH=977;; (*ITAG) Solyc09g097830.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67099611-67111955 transcript_region:SL2.40ch09:67099611..67111955+ go_terms:GO:0016262 functional_description:"TPR repeat protein (AHRD V1 **-- B0JK10_MICAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0016262 NbS00006249g0011.1 protein AED:0.36 eAED:0.37 QI:33|0.57|0.5|0.75|0.28|0.37|8|556|265; (*GB) gi|194462395|gb|ACF72672.1| (e_value=3e-92) ribosomal protein L24 [Cucumis melo var. cantalupensis];; (*SWP) sp|Q9CQ06|RM24_MOUSE (e_value=1e-26) 39S ribosomal protein L24, mitochondrial OS=Mus musculus GN=Mrpl24 PE=2 SV=1;; (*TAIR) AT5G23535.1 (e_value=5e-89) | Symbols: | KOW domain-containing protein | chr5:7935871-7937127 FORWARD LENGTH=159;; (*ITAG) Solyc08g075850.2.1 (e_value=7e-103) genomic_reference:SL2.40ch08 gene_region:57094012-57098518 transcript_region:SL2.40ch08:57094012..57098518- go_terms:GO:0005515 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- Q9LT09_ARATH); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005515 NbS00032722g0005.1 protein AED:0.61 eAED:0.61 QI:0|0|0|0.33|1|1|3|0|156; (*GB) gi|57013921|ref|YP_173394.1| (e_value=6e-33) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=2e-32) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=3e-33) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00032722g0006.1 protein AED:0.41 eAED:1.00 QI:0|0|0|0.33|0|0|3|0|96 NbS00017666g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|117; (*GB) gi|93280156|gb|ABF06706.1| (e_value=2e-41) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=1e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00017666g0011.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|68; (*GB) gi|125972134|gb|ABN59088.1| (e_value=3e-19) photosystem I P700 chlorophyll A apoprotein A1, partial (chloroplast) [Penium spirostriolatum];; (*SWP) sp|Q9MUK4|PSAA_ENCLE (e_value=4e-20) Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Encephalartos lebomboensis GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=1e-19) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00017295g0003.1 protein AED:0.39 eAED:0.39 QI:0|0|0.25|0.75|1|1|4|144|191; (*GB) gi|356536562|ref|XP_003536806.1| (e_value=9e-61) PREDICTED: uncharacterized protein LOC100791066 [Glycine max];; (*TAIR) AT5G43680.2 (e_value=8e-34) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. | chr5:17544074-17545354 FORWARD LENGTH=232;; (*ITAG) Solyc04g080950.2.1 (e_value=3e-78) genomic_reference:SL2.40ch04 gene_region:62601559-62605364 transcript_region:SL2.40ch04:62601559..62605364- functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG95_ARATH)"; NbS00033242g0002.1 protein AED:0.39 eAED:0.40 QI:0|0|0|1|0|0|2|0|146 NbS00033242g0004.1 protein AED:0.49 eAED:0.53 QI:0|0|0|1|0|0|2|0|89 NbS00033242g0003.1 protein AED:0.44 eAED:0.55 QI:0|0|0|1|0|0|3|0|89; (*ITAG) Solyc10g049530.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00044536g0001.1 protein AED:0.15 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|356531395|ref|XP_003534263.1| (e_value=1e-21) PREDICTED: uncharacterized protein At5g65660-like [Glycine max];; (*SWP) sp|Q9LSK9|Y5566_ARATH (e_value=1e-17) Uncharacterized protein At5g65660 OS=Arabidopsis thaliana GN=At5g65660 PE=1 SV=1;; (*TAIR) AT5G65660.1 (e_value=9e-19) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:26245444-26246245 REVERSE LENGTH=136;; (*ITAG) Solyc12g088140.1.1 (e_value=9e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62048826-62049879 transcript_region:SL2.40ch12:62048826..62049879+ functional_description:"Hydroxyproline-rich glycoprotein (AHRD V1 **-- A9YWR1_MEDTR)"; NbS00006948g0005.1 protein AED:0.63 eAED:0.69 QI:0|0|0|0.33|1|1|3|0|122; (*GB) gi|57013968|ref|YP_173440.1| (e_value=5e-30) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00006948g0044.1 protein AED:0.16 eAED:0.18 QI:0|0|0|0.66|0|0.33|3|0|142; (*GB) gi|57013967|ref|YP_173439.1| (e_value=3e-49) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00006948g0037.1 protein AED:0.30 eAED:0.37 QI:0|0|0|1|0|0|3|0|296; (*GB) gi|57013964|ref|YP_173436.1| (e_value=4e-60) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00006948g0046.1 protein AED:0.10 eAED:0.19 QI:0|0|0|1|0|0|3|0|290; (*GB) gi|57013904|ref|YP_173377.1| (e_value=4e-101) hypothetical protein NitaMp031 [Nicotiana tabacum];; (*ITAG) Solyc06g043010.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:25503317-25504021 transcript_region:SL2.40ch06:25503317..25504021+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006948g0041.1 protein AED:0.36 eAED:0.49 QI:0|0|0|1|0|0|2|0|137; (*GB) gi|323435045|ref|YP_004222261.1| (e_value=4e-49) hypothetical protein BevumaM_p022 [Beta vulgaris subsp. maritima];; (*SWP) sp|O05000|NU2M_ARATH (e_value=1e-21) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*ITAG) ATMG01320.1 (e_value=3e-22) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc08g029260.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:23684885-23686465 transcript_region:SL2.40ch08:23684885..23686465- functional_description:"NADH dehydrogenase subunit 2 (AHRD V1 ***- Q5MA39_TOBAC)"; NbS00006948g0042.1 protein AED:0.23 eAED:0.23 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|388495774|gb|AFK35953.1| (e_value=4e-26) unknown [Lotus japonicus];; (*ITAG) Solyc00g094520.1.1 (e_value=1e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:15539102-15539287 transcript_region:SL2.40ch00:15539102..15539287- functional_description:"Unknown Protein (AHRD V1)"; NbS00006948g0043.1 protein AED:0.41 eAED:0.63 QI:0|0|0|0.66|0|0|3|0|62; (*ITAG) Solyc00g181250.2.1 (e_value=2e-13) genomic_reference:SL2.40ch00 gene_region:18316854-18317698 transcript_region:SL2.40ch00:18316854..18317698+ functional_description:"Unknown Protein (AHRD V1)"; NbC26035087g0001.1 protein AED:0.42 eAED:0.64 QI:0|0|0|1|1|1|3|0|122; (*TAIR) AT2G33390.1 (e_value=5e-13) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14151714-14152698 FORWARD LENGTH=98;; (*ITAG) Solyc09g090540.2.1 (e_value=1e-28) genomic_reference:SL2.40ch09 gene_region:65379328-65382647 transcript_region:SL2.40ch09:65379328..65382647- functional_description:"Unknown Protein (AHRD V1)"; NbS00030537g0002.1 protein AED:0.26 eAED:0.26 QI:0|0|0|1|0|0|3|0|116; (*GB) gi|358345178|ref|XP_003636659.1| (e_value=8e-32) Peptidyl-prolyl cis-trans isomerase [Medicago truncatula];; (*SWP) sp|Q8WUA2|PPIL4_HUMAN (e_value=1e-24) Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1;; (*TAIR) AT1G53720.1 (e_value=6e-32) | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20057012-20059508 FORWARD LENGTH=506;; (*ITAG) Solyc07g066420.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:65076198-65085928 transcript_region:SL2.40ch07:65076198..65085928+ go_terms:GO:0003676,GO:0006457,GO:0008270,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase-like protein (AHRD V1 *-*- D0NAF5_PHYIN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003676,GO:0006457,GO:0008270,GO:0000166 NbS00036846g0003.1 protein AED:0.26 eAED:0.48 QI:0|0|0|1|0|0|6|0|243; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-36) hypothetical protein [Nicotiana tabacum]; NbS00015937g0001.1 protein AED:0.34 eAED:0.34 QI:0|1|1|1|1|1|10|394|694; (*GB) gi|225454224|ref|XP_002273843.1| (e_value=0.0) PREDICTED: beta-amylase 7-like [Vitis vinifera];; (*SWP) sp|O80831|BAM7_ARATH (e_value=0.0) Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2;; (*TAIR) AT2G45880.1 (e_value=0.0) | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878674-18881824 REVERSE LENGTH=691;; (*ITAG) Solyc01g094580.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77758296-77767159 transcript_region:SL2.40ch01:77758296..77767159- go_terms:GO:0016161 functional_description:"Beta-amylase 9 (AHRD V1 **** D7M5N4_ARALY); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00015937g0008.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.8|1|0.5|0.6|5|272|444; (*GB) gi|356504432|ref|XP_003521000.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800227 [Glycine max];; (*TAIR) AT3G49050.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:18181498-18183613 FORWARD LENGTH=477;; (*ITAG) Solyc01g094570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77753001-77757781 transcript_region:SL2.40ch01:77753001..77757781+ go_terms:GO:0005516 functional_description:"Calmodulin-binding heat-shock-like protein (AHRD V1 **-* Q9SMU2_ARATH); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005516 NbS00015937g0013.1 protein AED:0.49 eAED:1.00 QI:0|0|0|1|0|0|2|0|64 NbS00033844g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|67|279; (*GB) gi|5902456|dbj|BAA84469.1| (e_value=8e-155) RNase NGR3 [Nicotiana glutinosa];; (*SWP) sp|P80196|RNLX_SOLLC (e_value=8e-140) Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2;; (*TAIR) AT2G02990.1 (e_value=8e-88) | Symbols: RNS1, ATRNS1 | ribonuclease 1 | chr2:873714-874667 FORWARD LENGTH=230;; (*ITAG) Solyc05g007940.2.1 (e_value=1e-141) genomic_reference:SL2.40ch05 gene_region:2366284-2369405 transcript_region:SL2.40ch05:2366284..2369405- go_terms:GO:0004521 functional_description:"Ribonuclease T2 (AHRD V1 ***- Q9ZQX1_CICAR); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00033844g0005.1 protein AED:0.18 eAED:0.18 QI:42|0.5|0.66|1|0.5|0.66|3|0|167; (*GB) gi|350535451|ref|NP_001234195.1| (e_value=4e-77) extracellular ribonuclease LE precursor [Solanum lycopersicum];; (*SWP) sp|P80022|RNLE_SOLLC (e_value=1e-78) Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2;; (*TAIR) AT1G14220.1 (e_value=1e-50) | Symbols: | Ribonuclease T2 family protein | chr1:4858642-4859601 REVERSE LENGTH=228;; (*ITAG) Solyc05g007950.2.1 (e_value=9e-80) genomic_reference:SL2.40ch05 gene_region:2373133-2374737 transcript_region:SL2.40ch05:2373133..2374737- go_terms:GO:0004521 functional_description:"Ribonuclease T2 (AHRD V1 ***- Q6A3R1_SOLLC); contains Interpro domain(s) IPR001568 Ribonuclease T2 "; GO:0004521 NbS00014036g0011.1 protein AED:0.02 eAED:0.05 QI:32|0.5|0.2|1|0.5|0.4|5|0|1108; (*GB) gi|224107157|ref|XP_002314392.1| (e_value=2e-128) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NZQ4|PAXI1_MOUSE (e_value=1e-13) PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1;; (*TAIR) AT3G21480.1 (e_value=3e-61) | Symbols: | BRCT domain-containing DNA repair protein | chr3:7567730-7571990 FORWARD LENGTH=1041;; (*ITAG) Solyc01g067790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69160687-69166508 transcript_region:SL2.40ch01:69160687..69166508+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00014036g0009.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.75|0.66|0.5|4|0|661; (*GB) gi|225432412|ref|XP_002276957.1| (e_value=3e-142) PREDICTED: uncharacterized protein LOC100244334 [Vitis vinifera];; (*SWP) sp|P48353|HLJ1_YEAST (e_value=7e-13) Protein HLJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HLJ1 PE=1 SV=1;; (*TAIR) AT3G06340.3 (e_value=3e-89) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr3:1920607-1922628 REVERSE LENGTH=673;; (*ITAG) Solyc01g067780.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00014036g0010.1 protein AED:0.46 eAED:0.46 QI:0|0|0|0.75|0.33|0.5|4|0|421; (*GB) gi|225432412|ref|XP_002276957.1| (e_value=2e-50) PREDICTED: uncharacterized protein LOC100244334 [Vitis vinifera];; (*TAIR) AT5G18750.1 (e_value=6e-38) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:6255177-6257831 FORWARD LENGTH=884;; (*ITAG) Solyc01g067780.1.1 (e_value=9e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:69150083-69152794 transcript_region:SL2.40ch01:69150083..69152794+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 49 (AHRD V1 *-*- DNJ49_ARATH); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00016181g0001.1 protein AED:0.07 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|255573111|ref|XP_002527485.1| (e_value=2e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G19550.1 (e_value=2e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6787462-6788165 REVERSE LENGTH=110;; (*ITAG) Solyc01g107280.2.1 (e_value=3e-25) genomic_reference:SL2.40ch01 gene_region:86639086-86640167 transcript_region:SL2.40ch01:86639086..86640167- functional_description:"Unknown Protein (AHRD V1)"; NbS00016181g0002.1 protein AED:0.22 eAED:0.22 QI:426|0.5|0.33|0.66|1|1|3|0|411; (*GB) gi|255573129|ref|XP_002527494.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*TAIR) AT3G19553.1 (e_value=2e-179) | Symbols: | Amino acid permease family protein | chr3:6790988-6792507 REVERSE LENGTH=479;; (*ITAG) Solyc10g049640.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41787315-41789243 transcript_region:SL2.40ch10:41787315..41789243- go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00005863g0007.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|390; (*GB) gi|255538432|ref|XP_002510281.1| (e_value=0.0) Protein Z, putative [Ricinus communis];; (*SWP) sp|Q9S7T8|SPZX_ARATH (e_value=3e-174) Serpin-ZX OS=Arabidopsis thaliana GN=At1g47710 PE=1 SV=1;; (*TAIR) AT1G47710.1 (e_value=2e-175) | Symbols: | Serine protease inhibitor (SERPIN) family protein | chr1:17558271-17560061 FORWARD LENGTH=391;; (*ITAG) Solyc04g079440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61536285-61539279 transcript_region:SL2.40ch04:61536285..61539279- go_terms:GO:0043027,GO:0004867 functional_description:"Serpin (Serine protease inhibitor) (AHRD V1 **-* Q53P13_ORYSJ); contains Interpro domain(s) IPR015554 Protease inhibitor I4, serpin, plant "; GO:0043027,GO:0004867 NbS00005863g0008.1 protein AED:0.19 eAED:0.19 QI:145|0.84|0.85|0.92|0.76|0.78|14|0|490; (*GB) gi|356552166|ref|XP_003544440.1| (e_value=0.0) PREDICTED: nucleobase-ascorbate transporter 3-like [Glycine max];; (*SWP) sp|Q8GZD4|NAT3_ARATH (e_value=0.0) Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2;; (*TAIR) AT2G26510.1 (e_value=0.0) | Symbols: PDE135 | Xanthine/uracil permease family protein | chr2:11274118-11277464 FORWARD LENGTH=551;; (*ITAG) Solyc04g079430.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61525781-61532952 transcript_region:SL2.40ch04:61525781..61532952- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I1J7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00006729g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.4|1|0.75|0.6|5|375|348; (*ITAG) Solyc05g050840.2.1 (e_value=9e-137) genomic_reference:SL2.40ch05 gene_region:60209514-60213820 transcript_region:SL2.40ch05:60209514..60213820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006729g0011.1 protein AED:0.19 eAED:0.20 QI:0|0|0|1|0.5|0.33|3|0|270; (*ITAG) Solyc05g050840.2.1 (e_value=3e-73) genomic_reference:SL2.40ch05 gene_region:60209514-60213820 transcript_region:SL2.40ch05:60209514..60213820+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006729g0003.1 protein AED:0.28 eAED:0.36 QI:0|0|0|1|1|1|2|0|147; (*GB) gi|224063655|ref|XP_002301249.1| (e_value=4e-29) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q8LBQ7|ERF34_ARATH (e_value=6e-29) Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2;; (*TAIR) AT2G44940.1 (e_value=5e-30) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:18537294-18538181 FORWARD LENGTH=295;; (*ITAG) Solyc05g050830.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:60197369-60198130 transcript_region:SL2.40ch05:60197369..60198130+ go_terms:GO:0005125,GO:0005138 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0005125,GO:0005138 NbS00006729g0010.1 protein AED:0.65 eAED:0.71 QI:0|0|0|0.5|1|1|2|0|70 NbS00000381g0003.1 protein AED:0.19 eAED:0.20 QI:583|0|0.5|1|0|0.5|2|214|120; (*GB) gi|359473299|ref|XP_003631286.1| (e_value=3e-41) PREDICTED: glutathione S-transferase U17 [Vitis vinifera];; (*SWP) sp|Q9FUS8|GSTUH_ARATH (e_value=1e-35) Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1;; (*TAIR) AT1G10370.1 (e_value=8e-37) | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227;; (*ITAG) Solyc05g006740.2.1 (e_value=3e-57) genomic_reference:SL2.40ch05 gene_region:1379095-1381005 transcript_region:SL2.40ch05:1379095..1381005+ go_terms:GO:0004364 functional_description:"Glutathione S-transferase (AHRD V1 **** A3FF38_9CARY); contains Interpro domain(s) IPR004046 Glutathione S-transferase, C-terminal "; GO:0004364 NbS00000381g0001.1 protein AED:0.43 eAED:0.46 QI:0|0|0|1|1|1|2|0|80 NbS00000381g0118.1 protein AED:0.20 eAED:0.27 QI:0|1|0.4|1|1|1|5|0|666 NbS00000381g0120.1 protein AED:0.29 eAED:0.29 QI:0|0|0.5|1|0|1|2|186|70 NbS00039486g0003.1 protein AED:0.23 eAED:0.25 QI:0|0.71|0.87|1|0.85|0.75|8|793|611; (*GB) gi|225435708|ref|XP_002283489.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 37 [Vitis vinifera];; (*SWP) sp|Q84W89|RH37_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2;; (*TAIR) AT2G42520.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633;; (*ITAG) Solyc01g005960.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00039486g0004.1 protein AED:0.32 eAED:0.53 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|225435656|ref|XP_002285673.1| (e_value=4e-12) PREDICTED: uncharacterized protein LOC100251830 [Vitis vinifera]; NbS00001672g0005.1 protein AED:0.03 eAED:0.03 QI:307|1|1|1|0|0|3|0|294; (*GB) gi|224053549|ref|XP_002297867.1| (e_value=5e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13250.1 (e_value=1e-29) | Symbols: | RING finger protein | chr5:4234486-4241615 FORWARD LENGTH=387;; (*ITAG) Solyc01g009720.1.1 (e_value=9e-85) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3999505-4000841 transcript_region:SL2.40ch01:3999505..4000841- functional_description:"Zinc finger family protein (AHRD V1 *-*- D7LC67_ARALY)"; NbS00049578g0001.1 protein AED:0.05 eAED:0.05 QI:0|0.33|0|1|1|1|4|0|1268; (*GB) gi|225445282|ref|XP_002281184.1| (e_value=0.0) PREDICTED: pattern formation protein EMB30-like [Vitis vinifera];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=0.0) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT5G19610.1 (e_value=0.0) | Symbols: GNL2 | GNOM-like 2 | chr5:6617746-6622045 REVERSE LENGTH=1375;; (*ITAG) Solyc03g070470.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:39329539-39335971 transcript_region:SL2.40ch03:39329539..39335971+ go_terms:GO:0005622 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 *--- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005622 NbS00022188g0009.1 protein AED:0.05 eAED:0.10 QI:0|0.5|0.2|1|0.5|0.4|5|394|847; (*GB) gi|296081053|emb|CBI18334.3| (e_value=9e-82) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G58130.1 (e_value=6e-65) | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:23521190-23523766 REVERSE LENGTH=748;; (*ITAG) Solyc07g042700.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53557522-53561470 transcript_region:SL2.40ch07:53557522..53561470- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding region RNP-1 (RNA recognition motif) Pyridoxal-dependent decarboxylase (AHRD V1 **-- A2Q361_MEDTR); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00022188g0012.1 protein AED:0.04 eAED:0.04 QI:0|1|0.6|1|0.75|0.8|5|0|478; (*GB) gi|255573803|ref|XP_002527821.1| (e_value=3e-162) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q940M4|OCT7_ARATH (e_value=7e-146) Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1;; (*TAIR) AT3G13050.1 (e_value=6e-147) | Symbols: | Major facilitator superfamily protein | chr3:4176866-4178868 FORWARD LENGTH=500;; (*ITAG) Solyc07g042900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53752300-53758204 transcript_region:SL2.40ch07:53752300..53758204+ go_terms:GO:0015101 functional_description:"Major facilitator family transporter (AHRD V1 **-* C9KLG5_9FIRM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015101 NbS00044789g0001.1 protein AED:0.07 eAED:0.07 QI:307|0.5|0.6|1|1|1|5|0|466; (*GB) gi|283837097|emb|CBH19893.1| (e_value=0.0) cell division control 20 [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q54MZ3|CDC20_DICDI (e_value=4e-119) Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1;; (*TAIR) AT4G33270.1 (e_value=0.0) | Symbols: CDC20.1 | Transducin family protein / WD-40 repeat family protein | chr4:16044545-16046590 REVERSE LENGTH=457;; (*ITAG) Solyc06g072830.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41305534-41308264 transcript_region:SL2.40ch06:41305534..41308264+ go_terms:GO:0030674,GO:0008022 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0030674,GO:0008022 NbS00044789g0018.1 protein AED:0.32 eAED:0.32 QI:385|1|0.5|1|1|1|2|0|373; (*GB) gi|147801049|emb|CAN77845.1| (e_value=2e-90) hypothetical protein VITISV_020829 [Vitis vinifera];; (*SWP) sp|P59278|Y1745_ARATH (e_value=7e-34) Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2;; (*TAIR) AT3G03140.1 (e_value=2e-57) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:724348-727093 FORWARD LENGTH=769;; (*ITAG) Solyc06g072820.2.1 (e_value=7e-158) genomic_reference:SL2.40ch06 gene_region:41297656-41304483 transcript_region:SL2.40ch06:41297656..41304483+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbS00044789g0017.1 protein AED:0.34 eAED:0.34 QI:0|0.5|0|1|0.5|0.66|3|0|435; (*GB) gi|225454838|ref|XP_002274927.1| (e_value=2e-80) PREDICTED: uncharacterized protein LOC100254467 [Vitis vinifera];; (*TAIR) AT3G03140.1 (e_value=3e-35) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:724348-727093 FORWARD LENGTH=769;; (*ITAG) Solyc06g072820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41297656-41304483 transcript_region:SL2.40ch06:41297656..41304483+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbS00044789g0016.1 protein AED:0.43 eAED:0.54 QI:175|0.33|0.5|1|1|0.75|4|0|114; (*GB) gi|225454817|ref|XP_002274926.1| (e_value=2e-62) PREDICTED: ADP-ribosylation factor [Vitis vinifera];; (*SWP) sp|P91924|ARF_DUGJA (e_value=5e-37) ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3;; (*TAIR) AT5G17060.1 (e_value=2e-64) | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor B1B | chr5:5611056-5612639 FORWARD LENGTH=192;; (*ITAG) Solyc01g008000.2.1 (e_value=9e-33) genomic_reference:SL2.40ch01 gene_region:2175122-2179207 transcript_region:SL2.40ch01:2175122..2179207+ go_terms:GO:0042802 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q76ME3_WHEAT); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0042802 NbS00044789g0020.1 protein AED:0.17 eAED:0.24 QI:43|0.75|0.6|1|0.75|0.6|5|0|541; (*GB) gi|297737357|emb|CBI26558.3| (e_value=5e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G03130.1 (e_value=4e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). | chr3:721439-723564 REVERSE LENGTH=520;; (*ITAG) Solyc06g072810.2.1 (e_value=2e-164) genomic_reference:SL2.40ch06 gene_region:41291876-41295402 transcript_region:SL2.40ch06:41291876..41295402- functional_description:"Unknown Protein (AHRD V1)"; NbS00003933g0015.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.5|1|0.33|0|4|314|495; (*GB) gi|193290672|gb|ACF17644.1| (e_value=0.0) putative p-coumarate 3-hydroxylase [Capsicum annuum];; (*SWP) sp|O48922|C98A2_SOYBN (e_value=0.0) Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1;; (*TAIR) AT2G40890.1 (e_value=0.0) | Symbols: CYP98A3 | cytochrome P450, family 98, subfamily A, polypeptide 3 | chr2:17058291-17060532 REVERSE LENGTH=508;; (*ITAG) Solyc01g096670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79462238-79465262 transcript_region:SL2.40ch01:79462238..79465262+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003933g0012.1 protein AED:0.39 eAED:0.39 QI:0|1|0.66|1|1|1|3|0|249; (*GB) gi|350536853|ref|NP_001234524.1| (e_value=1e-93) uncharacterized protein LOC543930 [Solanum lycopersicum];; (*TAIR) AT5G07020.1 (e_value=7e-59) | Symbols: | proline-rich family protein | chr5:2180669-2182284 REVERSE LENGTH=235;; (*ITAG) Solyc01g096660.2.1 (e_value=9e-96) genomic_reference:SL2.40ch01 gene_region:79458544-79461335 transcript_region:SL2.40ch01:79458544..79461335+ functional_description:"Genomic DNA chromosome 5 P1 clone MOJ9 (AHRD V1 ***- Q9FL44_ARATH)"; NbS00003933g0117.1 protein AED:0.19 eAED:0.19 QI:182|1|1|1|1|1|4|296|203 NbS00003933g0106.1 protein AED:0.01 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|656 NbS00003933g0125.1 protein AED:0.17 eAED:0.17 QI:0|0.77|0.6|1|0.66|0.6|10|0|666 NbS00003933g0127.1 protein AED:0.16 eAED:0.20 QI:0|0.57|0.5|1|0.80|0.86|22|0|907 NbS00003933g0124.1 protein AED:0.34 eAED:0.34 QI:0|0.9|0.63|1|0.8|0.81|11|250|591 NbS00003933g0126.1 protein AED:0.38 eAED:0.38 QI:0|0.5|0.28|1|0.16|0.42|7|0|358 NbS00003933g0123.1 protein AED:0.48 eAED:1.00 QI:0|0|0|1|1|1|2|0|97 NbS00005240g0003.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0.66|1|0|0|3|112|264; (*GB) gi|359480498|ref|XP_002262854.2| (e_value=3e-77) PREDICTED: transcription factor bHLH96-like [Vitis vinifera];; (*SWP) sp|Q9C7T4|BH096_ARATH (e_value=3e-50) Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1;; (*TAIR) AT1G72210.1 (e_value=3e-51) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320;; (*ITAG) Solyc11g010340.1.1 (e_value=2e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3413585-3415798 transcript_region:SL2.40ch11:3413585..3415798- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** Q401N4_9LILI); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbC25742659g0003.1 protein AED:0.11 eAED:0.11 QI:96|1|1|1|1|1|2|0|342; (*GB) gi|119012|sp|P23547.1|E13G_TOBAC (e_value=0.0) RecName: Full=Glucan endo-1,3-beta-glucosidase, acidic isoform GI9; AltName: Full=(1-;; (*SWP) sp|P23547|E13G_TOBAC (e_value=0.0) Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1;; (*TAIR) AT4G16260.1 (e_value=3e-117) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:9200180-9201441 REVERSE LENGTH=344;; (*ITAG) Solyc01g008620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2700728-2702463 transcript_region:SL2.40ch01:2700728..2702463+ go_terms:GO:0005515,GO:0008810 functional_description:"Beta-1 3-glucanase (AHRD V1 ***- Q9SYX6_TOBAC); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005515,GO:0008810 NbS00019972g0004.1 protein AED:0.11 eAED:0.11 QI:323|0.92|1|1|0.92|0.85|14|351|939; (*GB) gi|1730557|sp|P53535.1|PHSL2_SOLTU (e_value=0.0) RecName: Full=Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic; AltName: Full=Starch phosphorylase L-2; Flags: Precursor;; (*SWP) sp|P53535|PHSL2_SOLTU (e_value=0.0) Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1;; (*TAIR) AT3G29320.1 (e_value=0.0) | Symbols: | Glycosyl transferase, family 35 | chr3:11252871-11257587 FORWARD LENGTH=962;; (*ITAG) Solyc05g012510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5760758-5767157 transcript_region:SL2.40ch05:5760758..5767157- go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9HXL0_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00000787g0009.1 protein AED:0.36 eAED:0.36 QI:159|1|0.9|1|0.77|0.9|10|0|481; (*GB) gi|255561642|ref|XP_002521831.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q28FM1|RANB9_XENTR (e_value=1e-50) Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1;; (*TAIR) AT1G35470.2 (e_value=0.0) | Symbols: | SPla/RYanodine receptor (SPRY) domain-containing protein | chr1:13051636-13054922 REVERSE LENGTH=467;; (*ITAG) Solyc03g033380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:9216291-9232662 transcript_region:SL2.40ch03:9216291..9232662- go_terms:GO:0008536 functional_description:"Ran-binding protein 9 (AHRD V1 **-* B6UAR9_MAIZE); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008536 NbS00000787g0010.1 protein AED:0.26 eAED:0.26 QI:0|0.71|0.63|0.95|0.61|0.68|22|0|811; (*GB) gi|359485642|ref|XP_002271447.2| (e_value=0.0) PREDICTED: protein argonaute 16-like [Vitis vinifera];; (*SWP) sp|Q6YSJ5|AGO16_ORYSJ (e_value=0.0) Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2;; (*TAIR) AT5G21150.1 (e_value=0.0) | Symbols: AGO9 | Argonaute family protein | chr5:7193472-7198113 FORWARD LENGTH=896;; (*ITAG) Solyc07g049500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57093533-57104122 transcript_region:SL2.40ch07:57093533..57104122- go_terms:GO:0035197,GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0035197,GO:0019899 NbS00029006g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|135 NbS00029006g0016.1 protein AED:0.39 eAED:0.39 QI:182|0.5|0.66|1|0.5|0.66|3|0|139; (*GB) gi|313586603|gb|ADR71312.1| (e_value=5e-77) hypothetical protein 33 [Hevea brasiliensis];; (*TAIR) AT1G08480.1 (e_value=1e-63) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2684340-2685395 FORWARD LENGTH=142;; (*ITAG) Solyc06g073900.2.1 (e_value=9e-87) genomic_reference:SL2.40ch06 gene_region:42011100-42014951 transcript_region:SL2.40ch06:42011100..42014951- functional_description:"Unknown Protein (AHRD V1)"; NbS00029006g0012.1 protein AED:0.46 eAED:0.50 QI:15|0|0|1|0|0|3|0|135; (*GB) gi|296084022|emb|CBI24410.3| (e_value=1e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G08470.1 (e_value=2e-40) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=6e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00035683g0012.1 protein AED:0.45 eAED:0.50 QI:0|0.5|0.33|1|0.5|0.66|3|7|134; (*GB) gi|225463891|ref|XP_002264093.1| (e_value=8e-34) PREDICTED: uncharacterized protein LOC100246114 [Vitis vinifera];; (*TAIR) AT1G76950.1 (e_value=3e-32) | Symbols: PRAF1 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:28906952-28911325 FORWARD LENGTH=1103;; (*ITAG) Solyc04g071040.2.1 (e_value=5e-38) genomic_reference:SL2.40ch04 gene_region:55505152-55514903 transcript_region:SL2.40ch04:55505152..55514903- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00035683g0014.1 protein AED:0.03 eAED:0.03 QI:258|1|1|1|0.6|0.33|6|246|292; (*GB) gi|387600862|gb|AFJ92922.1| (e_value=6e-141) Tau1 [Solanum lycopersicum];; (*SWP) sp|Q9SCY5|KINB2_ARATH (e_value=1e-81) SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1;; (*TAIR) AT4G16360.3 (e_value=1e-82) | Symbols: | 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261;; (*ITAG) Solyc07g045460.2.1 (e_value=8e-145) genomic_reference:SL2.40ch07 gene_region:55921590-55925559 transcript_region:SL2.40ch07:55921590..55925559+ go_terms:GO:0019901 functional_description:"5-AMP-activated protein kinase subunit beta-1 (AHRD V1 **** C1BGS7_ONCMY); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00035683g0002.1 protein AED:0.28 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|255578713|ref|XP_002530215.1| (e_value=0.0) beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis];; (*SWP) sp|Q09326|MGAT2_RAT (e_value=2e-56) Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat2 PE=1 SV=1;; (*TAIR) AT2G05320.1 (e_value=0.0) | Symbols: | beta-1,2-N-acetylglucosaminyltransferase II | chr2:1936016-1937308 FORWARD LENGTH=430;; (*ITAG) Solyc07g045470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55929219-55930481 transcript_region:SL2.40ch07:55929219..55930481+ go_terms:GO:0008455 functional_description:"Alpha-1 6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase (AHRD V1 **** B5X4D8_SALSA); contains Interpro domain(s) IPR007754 N-acetylglucosaminyltransferase II "; GO:0008455 NbS00035683g0016.1 protein AED:0.75 eAED:0.82 QI:92|0|0|0.66|0.5|0.33|3|0|56; (*GB) gi|224118176|ref|XP_002331576.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G01435.1 (e_value=1e-26) | Symbols: | Expressed protein | chr3:166853-167984 REVERSE LENGTH=115; NbS00035683g0013.1 protein AED:0.09 eAED:0.33 QI:0|0|0|1|0|0|2|78|73; (*GB) gi|225455764|ref|XP_002269953.1| (e_value=2e-29) PREDICTED: uncharacterized protein LOC100255926 [Vitis vinifera];; (*TAIR) AT3G01435.1 (e_value=1e-25) | Symbols: | Expressed protein | chr3:166853-167984 REVERSE LENGTH=115;; (*ITAG) Solyc04g014700.2.1 (e_value=7e-43) genomic_reference:SL2.40ch04 gene_region:4961928-4964016 transcript_region:SL2.40ch04:4961928..4964016- go_terms:GO:0016592 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019404 Mediator complex, subunit Med11 "; GO:0016592 NbS00047041g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|99; (*GB) gi|225444385|ref|XP_002267815.1| (e_value=1e-17) PREDICTED: probable serine/threonine-protein kinase WNK4 [Vitis vinifera];; (*SWP) sp|Q8S8Y8|WNK6_ARATH (e_value=2e-14) Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1;; (*TAIR) AT3G18750.3 (e_value=1e-15) | Symbols: WNK6 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=567;; (*ITAG) Solyc10g009060.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3091684-3092652 transcript_region:SL2.40ch10:3091684..3092652+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q9FDV6_FAGSY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007309g0021.1 protein AED:0.06 eAED:0.06 QI:182|0.66|0.71|1|0.16|0.14|7|831|144; (*GB) gi|13774348|gb|AAK38843.1|AF346308_1 (e_value=7e-59) histidine-containing phosphotransfer protein [Catharanthus roseus];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=2e-42) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=2e-43) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g080540.2.1 (e_value=6e-70) genomic_reference:SL2.40ch01 gene_region:72299197-72301457 transcript_region:SL2.40ch01:72299197..72301457+ go_terms:GO:0009927 functional_description:"Histidine-containing phosphotransfer protein (AHRD V1 **** Q94KS0_CATRO); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00007309g0023.1 protein AED:0.16 eAED:0.16 QI:677|0.88|0.9|1|0.44|0.6|10|335|375; (*GB) gi|225436851|ref|XP_002271734.1| (e_value=0.0) PREDICTED: LEC14B homolog [Vitis vinifera];; (*SWP) sp|O24467|LE14B_PRUAR (e_value=0.0) LEC14B homolog OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT4G03020.2 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:1331704-1334472 REVERSE LENGTH=493;; (*ITAG) Solyc01g080690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72441864-72448982 transcript_region:SL2.40ch01:72441864..72448982+ go_terms:GO:0008134 functional_description:"Transcription initiation factor TFIID subunit 5 (AHRD V1 *--* TAF5_SCHPO); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0008134 NbS00007309g0010.1 protein AED:0.19 eAED:0.19 QI:1206|1|0.9|1|0.77|0.7|10|0|420; (*GB) gi|297736936|emb|CBI26137.3| (e_value=4e-130) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S9G8|SPL7_ARATH (e_value=2e-97) Squamosa promoter-binding-like protein 7 OS=Arabidopsis thaliana GN=SPL7 PE=1 SV=2;; (*TAIR) AT5G18830.2 (e_value=2e-102) | Symbols: SPL7 | squamosa promoter binding protein-like 7 | chr5:6276116-6280227 FORWARD LENGTH=775;; (*ITAG) Solyc01g080670.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72426066-72434691 transcript_region:SL2.40ch01:72426066..72434691+ go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00007309g0026.1 protein AED:0.19 eAED:0.22 QI:1158|0.63|0.66|1|0.27|0.25|12|0|385; (*GB) gi|356564566|ref|XP_003550523.1| (e_value=2e-88) PREDICTED: uncharacterized protein LOC100788041 [Glycine max];; (*TAIR) AT5G18860.1 (e_value=4e-84) | Symbols: | inosine-uridine preferring nucleoside hydrolase family protein | chr5:6291023-6295581 FORWARD LENGTH=890;; (*ITAG) Solyc01g080700.2.1 (e_value=1e-108) genomic_reference:SL2.40ch01 gene_region:72457474-72466316 transcript_region:SL2.40ch01:72457474..72466316+ go_terms:GO:0016787 functional_description:"Inosine-uridine preferring nucleoside hydrolase family protein (AHRD V1 **** D7LYI5_ARALY); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; GO:0016787 NbS00021090g0014.1 protein AED:0.01 eAED:0.01 QI:101|1|1|1|1|1|2|339|325; (*GB) gi|1749825|emb|CAA96528.1| (e_value=0.0) G protein beta-subunit-like protein [Nicotiana plumbaginifolia];; (*SWP) sp|P93340|GBLP_NICPL (e_value=0.0) Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*TAIR) AT1G18080.1 (e_value=0.0) | Symbols: ATARCA, RACK1A_AT, RACK1A | Transducin/WD40 repeat-like superfamily protein | chr1:6222325-6223901 FORWARD LENGTH=327;; (*ITAG) Solyc03g119040.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61807988-61810035 transcript_region:SL2.40ch03:61807988..61810035- go_terms:GO:0005080,GO:0000166 functional_description:"Guanine nucleotide-binding protein beta subunit-like protein (AHRD V1 **-* B4FKM1_MAIZE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005080,GO:0000166 NbS00021090g0003.1 protein AED:0.13 eAED:0.14 QI:168|0|0.5|1|0|1|2|734|219; (*GB) gi|359491009|ref|XP_003634199.1| (e_value=4e-74) PREDICTED: uncharacterized GPI-anchored protein At4g28100-like [Vitis vinifera];; (*SWP) sp|Q9SUC9|UGPI7_ARATH (e_value=1e-34) Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1;; (*TAIR) AT3G18050.1 (e_value=3e-65) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6180931-6182593 FORWARD LENGTH=335;; (*ITAG) Solyc06g069000.2.1 (e_value=2e-122) genomic_reference:SL2.40ch06 gene_region:39204920-39207361 transcript_region:SL2.40ch06:39204920..39207361+ functional_description:"Uncharacterized GPI-anchored protein At4g28100 (AHRD V1 ***- UGPI7_ARATH)"; NbS00021090g0001.1 protein AED:0.41 eAED:0.48 QI:0|0.4|0|1|1|1|6|0|353; (*GB) gi|383081823|dbj|BAM05565.1| (e_value=2e-95) cellulose synthase 1, partial [Eucalyptus pilularis];; (*SWP) sp|A2WV32|CESA4_ORYSI (e_value=2e-95) Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2;; (*TAIR) AT4G18780.1 (e_value=2e-94) | Symbols: CESA8, IRX1, ATCESA8, LEW2 | cellulose synthase family protein | chr4:10312846-10316719 REVERSE LENGTH=985;; (*ITAG) Solyc02g072240.2.1 (e_value=5e-103) genomic_reference:SL2.40ch02 gene_region:36127210-36131873 transcript_region:SL2.40ch02:36127210..36131873+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6J8W9_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00021090g0020.1 protein AED:0.86 eAED:0.86 QI:0|0|0|0.33|1|1|3|0|86; (*GB) gi|1009232|gb|AAA79032.1| (e_value=2e-32) EF-1-alpha-related GTP-binding protein [Nicotiana tabacum];; (*TAIR) AT1G18070.2 (e_value=7e-16) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr1:6214236-6218211 REVERSE LENGTH=532;; (*ITAG) Solyc06g069020.2.1 (e_value=2e-29) genomic_reference:SL2.40ch06 gene_region:39212135-39224003 transcript_region:SL2.40ch06:39212135..39224003+ go_terms:GO:0005525,GO:0006415 functional_description:"Elongation factor 1 alpha (AHRD V1 ***- Q2F6A7_BOMMO); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0006415 NbS00021090g0021.1 protein AED:0.67 eAED:0.67 QI:0|1|0|1|0|0.5|2|0|102 NbS00057798g0003.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0|1|0.33|0.5|4|0|274; (*GB) gi|317451426|emb|CBV37053.1| (e_value=1e-116) GDSL lipase-like chlorogenate-dependent caffeoyltransferase precursor [Solanum lycopersicum];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=1e-73) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=8e-75) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc01g099030.2.1 (e_value=5e-147) genomic_reference:SL2.40ch01 gene_region:81132598-81136508 transcript_region:SL2.40ch01:81132598..81136508- go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 **** GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00021394g0007.1 protein AED:0.24 eAED:0.24 QI:888|0.85|0.73|1|0.85|0.8|15|0|437; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=1e-157) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=0.0) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc06g083830.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45418434-45430398 transcript_region:SL2.40ch06:45418434..45430398- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00021394g0006.1 protein AED:0.40 eAED:0.49 QI:0|0.2|0.33|0.66|1|1|6|0|199; (*GB) gi|76161008|gb|ABA40467.1| (e_value=1e-59) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9T043|RL142_ARATH (e_value=1e-53) 60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1;; (*TAIR) AT4G27090.1 (e_value=9e-55) | Symbols: | Ribosomal protein L14 | chr4:13594104-13595187 REVERSE LENGTH=134;; (*ITAG) Solyc06g008260.2.1 (e_value=4e-63) genomic_reference:SL2.40ch06 gene_region:2134911-2138172 transcript_region:SL2.40ch06:2134911..2138172+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00021394g0202.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0.33|1|0|0|3|0|245 NbC24320562g0002.1 protein AED:0.20 eAED:0.20 QI:0|1|0|1|0|0|2|0|93; (*GB) gi|9454542|gb|AAF87865.1|AC022520_9 (e_value=7e-32) Unknown protein [Arabidopsis thaliana];; (*TAIR) AT1G53040.2 (e_value=5e-34) | Symbols: | Protein of unknown function (DUF616) | chr1:19764567-19766870 REVERSE LENGTH=540;; (*ITAG) Solyc10g009050.2.1 (e_value=2e-34) genomic_reference:SL2.40ch10 gene_region:3072014-3076867 transcript_region:SL2.40ch10:3072014..3076867- functional_description:"Os11g0198100 protein (Fragment) (AHRD V1 *--- Q0IU20_ORYSJ); contains Interpro domain(s) IPR006852 Protein of unknown function DUF616 "; NbS00053311g0014.1 protein AED:0.11 eAED:0.15 QI:0|0.5|0|1|0.5|0.4|5|0|1123; (*GB) gi|359486198|ref|XP_002268959.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera];; (*SWP) sp|P09122|DPO3X_BACSU (e_value=7e-43) DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3;; (*TAIR) AT2G02480.1 (e_value=0.0) | Symbols: STI | AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218;; (*ITAG) Solyc01g102810.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83273087-83279273 transcript_region:SL2.40ch01:83273087..83279273+ go_terms:GO:0009360,GO:0006468,GO:0006260 functional_description:"DNA polymerase III gamma and tau subunit (AHRD V1 *-*- B5IJD5_9CHRO); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0006468,GO:0006260 NbS00053311g0004.1 protein AED:0.40 eAED:0.40 QI:0|0|0.5|1|0|1|2|604|71; (*GB) gi|225465290|ref|XP_002268875.1| (e_value=3e-28) PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Vitis vinifera];; (*SWP) sp|Q9M9R9|NDB3B_ARATH (e_value=1e-27) NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B OS=Arabidopsis thaliana GN=At1g14450 PE=2 SV=1;; (*TAIR) AT1G14450.1 (e_value=9e-29) | Symbols: | NADH dehydrogenase (ubiquinone)s | chr1:4947337-4947558 REVERSE LENGTH=73;; (*ITAG) Solyc01g102830.2.1 (e_value=8e-38) genomic_reference:SL2.40ch01 gene_region:83288462-83289299 transcript_region:SL2.40ch01:83288462..83289299+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053311g0015.1 protein AED:0.42 eAED:0.45 QI:0|1|0|1|0|0.5|2|0|237; (*GB) gi|147856455|emb|CAN80767.1| (e_value=2e-60) hypothetical protein VITISV_013864 [Vitis vinifera];; (*TAIR) AT2G02480.1 (e_value=5e-35) | Symbols: STI | AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218;; (*ITAG) Solyc01g102810.2.1 (e_value=5e-111) genomic_reference:SL2.40ch01 gene_region:83273087-83279273 transcript_region:SL2.40ch01:83273087..83279273+ go_terms:GO:0009360,GO:0006468,GO:0006260 functional_description:"DNA polymerase III gamma and tau subunit (AHRD V1 *-*- B5IJD5_9CHRO); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0006468,GO:0006260 NbS00053311g0016.1 protein AED:0.00 eAED:0.00 QI:25|1|1|1|0|0|2|0|90 NbS00053311g0017.1 protein AED:0.27 eAED:0.30 QI:232|0.9|0.81|1|0.8|0.90|11|0|323; (*GB) gi|157042735|gb|ABV02019.1| (e_value=0.0) 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P69834|ISPD_ARATH (e_value=1e-131) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1;; (*TAIR) AT2G02500.1 (e_value=1e-132) | Symbols: ISPD, ATMEPCT, MCT | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:671054-673124 REVERSE LENGTH=302;; (*ITAG) Solyc01g102820.2.1 (e_value=4e-180) genomic_reference:SL2.40ch01 gene_region:83279474-83284682 transcript_region:SL2.40ch01:83279474..83284682- go_terms:GO:0008299 functional_description:"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (AHRD V1 ***- A9ZN09_HEVBR); contains Interpro domain(s) IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase "; GO:0008299 NbS00043333g0007.1 protein AED:0.15 eAED:0.15 QI:22|0.83|0.85|1|1|1|7|324|147; (*GB) gi|29839345|sp|Q8H1T3.1|FRI2_TOBAC (e_value=2e-98) RecName: Full=Ferritin-2, chloroplastic; AltName: Full=NtFer2; Flags: Precursor;; (*SWP) sp|Q8H1T3|FRI2_TOBAC (e_value=5e-100) Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1;; (*TAIR) AT2G40300.1 (e_value=2e-86) | Symbols: ATFER4, FER4 | ferritin 4 | chr2:16831501-16833214 REVERSE LENGTH=259;; (*ITAG) Solyc05g052470.2.1 (e_value=5e-97) genomic_reference:SL2.40ch05 gene_region:61831795-61835156 transcript_region:SL2.40ch05:61831795..61835156+ go_terms:GO:0008198,GO:0042802 functional_description:"Ferritin (AHRD V1 ***- A7UGG8_SOLTU); contains Interpro domain(s) IPR001519 Ferritin, N-terminal "; GO:0008198,GO:0042802 NbS00043333g0008.1 protein AED:0.22 eAED:0.22 QI:145|0.66|0.8|1|0.77|0.7|10|319|438; (*GB) gi|297736558|emb|CBI25429.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54ND5|MINP1_DICDI (e_value=1e-26) Multiple inositol polyphosphate phosphatase 1 OS=Dictyostelium discoideum GN=mipp1 PE=1 SV=1;; (*TAIR) AT1G09870.1 (e_value=1e-163) | Symbols: | histidine acid phosphatase family protein | chr1:3205817-3208444 FORWARD LENGTH=487;; (*ITAG) Solyc05g052480.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61836481-61844845 transcript_region:SL2.40ch05:61836481..61844845+ go_terms:GO:0003993 functional_description:"Multiple inositol polyphosphate phosphatase (AHRD V1 ***- Q54ND5_DICDI); contains Interpro domain(s) IPR016274 Histidine acid phosphatase, eukaryotic "; GO:0003993 NbS00001715g0015.1 protein AED:0.08 eAED:0.08 QI:74|0.5|0.33|1|0|1|3|0|205; (*GB) gi|359475374|ref|XP_003631671.1| (e_value=6e-70) PREDICTED: uncharacterized protein LOC100854865 [Vitis vinifera];; (*SWP) sp|Q93YN0|SCO2_ARATH (e_value=3e-58) Protein disulfide-isomerase SCO2 OS=Arabidopsis thaliana GN=SCO2 PE=1 SV=1;; (*TAIR) AT3G19220.1 (e_value=3e-59) | Symbols: CYO1, SCO2 | protein disulfide isomerases | chr3:6659207-6660488 FORWARD LENGTH=187;; (*ITAG) Solyc01g108200.2.1 (e_value=6e-70) genomic_reference:SL2.40ch01 gene_region:87316198-87320141 transcript_region:SL2.40ch01:87316198..87320141- functional_description:"cDNA clone J013057C16 full insert sequence (AHRD V1 *-*- B7F5R8_ORYSJ)"; NbS00001715g0004.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|158; (*GB) gi|255555481|ref|XP_002518777.1| (e_value=4e-37) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g108170.2.1 (e_value=4e-43) genomic_reference:SL2.40ch01 gene_region:87304636-87305554 transcript_region:SL2.40ch01:87304636..87305554- functional_description:"Unknown Protein (AHRD V1)"; NbS00001715g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.83|0.85|1|1|1|7|500|508; (*GB) gi|297306778|dbj|BAJ08391.1| (e_value=0.0) fucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LJK1|FUT11_ARATH (e_value=0.0) Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana GN=FUT11 PE=2 SV=1;; (*TAIR) AT3G19280.1 (e_value=0.0) | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltransferase 11 | chr3:6681409-6683801 REVERSE LENGTH=501;; (*ITAG) Solyc01g108110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00001715g0014.1 protein AED:0.33 eAED:0.33 QI:138|1|1|1|1|1|5|432|240; (*GB) gi|359475370|ref|XP_003631670.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100854716 [Vitis vinifera];; (*ITAG) Solyc10g050220.1.1 (e_value=1e-100) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:43617221-43626571 transcript_region:SL2.40ch10:43617221..43626571+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013202g0017.1 protein AED:0.14 eAED:0.14 QI:0|0.75|0.8|1|0|0.4|5|28|211; (*GB) gi|297737587|emb|CBI26788.3| (e_value=7e-60) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q67ZF6|ACFR3_ARATH (e_value=3e-51) Probable transmembrane ascorbate ferrireductase 3 OS=Arabidopsis thaliana GN=CYB561C PE=2 SV=1;; (*TAIR) AT1G14730.1 (e_value=2e-52) | Symbols: | Cytochrome b561/ferric reductase transmembrane protein family | chr1:5073244-5074568 FORWARD LENGTH=224;; (*ITAG) Solyc01g005150.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:131976-134318 transcript_region:SL2.40ch01:131976..134318- go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR004877 Cytochrome b561, eukaryote "; GO:0000293 NbS00013202g0018.1 protein AED:0.20 eAED:0.29 QI:214|0.5|0.4|1|0.75|0.6|5|0|148; (*GB) gi|225424448|ref|XP_002281627.1| (e_value=2e-40) PREDICTED: transmembrane ascorbate ferrireductase 1 [Vitis vinifera];; (*SWP) sp|Q8L856|ACFR1_ARATH (e_value=6e-27) Transmembrane ascorbate ferrireductase 1 OS=Arabidopsis thaliana GN=CYB561A PE=1 SV=1;; (*TAIR) AT4G25570.1 (e_value=4e-28) | Symbols: ACYB-2 | Cytochrome b561/ferric reductase transmembrane protein family | chr4:13053887-13055518 REVERSE LENGTH=239;; (*ITAG) Solyc01g005140.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:127129-129219 transcript_region:SL2.40ch01:127129..129219- go_terms:GO:0000293 functional_description:"Cytochrome b561 (AHRD V1 ***- Q3LGX5_CITLA); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0000293 NbS00013202g0002.1 protein AED:0.10 eAED:0.11 QI:371|0|0.5|1|0|0.5|2|0|249; (*GB) gi|224099591|ref|XP_002311543.1| (e_value=7e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39263|ZFP4_ARATH (e_value=1e-47) Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2;; (*TAIR) AT1G66140.1 (e_value=9e-49) | Symbols: ZFP4 | zinc finger protein 4 | chr1:24620063-24620845 REVERSE LENGTH=260;; (*ITAG) Solyc01g005130.2.1 (e_value=3e-128) genomic_reference:SL2.40ch01 gene_region:124758-125782 transcript_region:SL2.40ch01:124758..125782+ go_terms:GO:0003700 functional_description:"Zinc finger protein 7 (AHRD V1 ***- B6U8J3_MAIZE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00013202g0005.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|445; (*GB) gi|297528369|gb|ADI46214.1| (e_value=0.0) CMPG1b [Nicotiana benthamiana];; (*SWP) sp|Q5PNY6|PUB21_ARATH (e_value=2e-87) U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1;; (*TAIR) AT5G37490.1 (e_value=2e-88) | Symbols: | ARM repeat superfamily protein | chr5:14887744-14889051 FORWARD LENGTH=435;; (*ITAG) Solyc01g005160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:137781-139489 transcript_region:SL2.40ch01:137781..139489+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7MID4_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0005488,GO:0000151 NbS00030595g0006.1 protein AED:0.05 eAED:0.05 QI:140|1|1|1|1|1|4|590|151; (*GB) gi|313586481|gb|ADR71251.1| (e_value=6e-101) 40S ribosomal protein S15D [Hevea brasiliensis];; (*SWP) sp|O65059|RS15_PICMA (e_value=8e-97) 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1;; (*TAIR) AT5G09500.1 (e_value=1e-88) | Symbols: | Ribosomal protein S19 family protein | chr5:2954044-2954850 REVERSE LENGTH=150;; (*ITAG) Solyc06g053820.2.1 (e_value=6e-106) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00023184g0010.1 protein AED:0.06 eAED:0.06 QI:1181|0.6|0.66|1|0.8|0.66|6|443|387; (*GB) gi|225458016|ref|XP_002276739.1| (e_value=1e-168) PREDICTED: endoglucanase 24 [Vitis vinifera];; (*SWP) sp|Q69SG5|GUN24_ORYSJ (e_value=3e-159) Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1;; (*TAIR) AT1G19940.1 (e_value=6e-147) | Symbols: AtGH9B5, GH9B5 | glycosyl hydrolase 9B5 | chr1:6918323-6920268 REVERSE LENGTH=515;; (*ITAG) Solyc02g083980.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41789933-41792962 transcript_region:SL2.40ch02:41789933..41792962+ go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00023184g0009.1 protein AED:0.22 eAED:0.22 QI:987|1|1|1|1|1|2|311|344; (*GB) gi|255579815|ref|XP_002530745.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17990.1 (e_value=5e-137) | Symbols: | BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7827480-7828596 FORWARD LENGTH=338;; (*ITAG) Solyc02g083990.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41795633-41799345 transcript_region:SL2.40ch02:41795633..41799345+ functional_description:"Calcium-dependent protein kinase CPK1 adapter protein 2-like (AHRD V1 ***- Q5Z9P7_ORYSJ)"; NbS00023184g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|255579799|ref|XP_002530737.1| (e_value=2e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17972.1 (e_value=5e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:7821624-7822100 FORWARD LENGTH=158;; (*ITAG) Solyc02g083970.1.1 (e_value=7e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41788684-41789169 transcript_region:SL2.40ch02:41788684..41789169+ functional_description:"Chromosome 18 contig 1 DNA sequence (AHRD V1 *-*- Q00SS6_OSTTA)"; NbS00017489g0001.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|130 NbS00004447g0003.1 protein AED:0.12 eAED:0.12 QI:191|1|1|1|1|1|7|293|548; (*GB) gi|157837029|pdb|5EAS|A (e_value=0.0) Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum;; (*SWP) sp|Q40577|5EAS_TOBAC (e_value=0.0) 5-epi-aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3;; (*TAIR) AT5G23960.2 (e_value=7e-137) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82795416-82797728 transcript_region:SL2.40ch01:82795416..82797728+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00004447g0101.1 protein AED:0.13 eAED:0.13 QI:136|1|0.85|1|1|1|7|0|548 NbS00004447g0302.1 protein AED:0.34 eAED:0.34 QI:0|1|0.8|1|1|1|5|0|240 NbS00004447g0305.1 protein AED:0.37 eAED:0.37 QI:0|1|1|1|1|1|5|288|209 NbS00038350g0003.1 protein AED:0.23 eAED:0.24 QI:0|0.75|0.55|1|1|1|9|300|863; (*GB) gi|359496777|ref|XP_002265108.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252003 [Vitis vinifera];; (*TAIR) AT4G37900.1 (e_value=0.0) | Symbols: | Protein of unknown function (duplicated DUF1399) | chr4:17821737-17824445 REVERSE LENGTH=787;; (*ITAG) Solyc02g063450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:30120817-30126388 transcript_region:SL2.40ch02:30120817..30126388- functional_description:"Hypothetical YFW family protein 5 (AHRD V1 *--- Q5AP84_CANAL); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00012845g0001.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.33|1|1|3|0|77 NbS00010631g0006.1 protein AED:0.18 eAED:0.22 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|297845476|ref|XP_002890619.1| (e_value=1e-27) hypothetical protein ARALYDRAFT_472693 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G27090.1 (e_value=3e-29) | Symbols: | glycine-rich protein | chr1:9404041-9406098 REVERSE LENGTH=420;; (*ITAG) Solyc01g010440.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:5342392-5348166 transcript_region:SL2.40ch01:5342392..5348166- functional_description:"Unknown Protein (AHRD V1)"; NbS00024893g0003.1 protein AED:0.17 eAED:0.28 QI:0|0|0|1|0|0.25|4|0|392; (*GB) gi|226503243|ref|NP_001152233.1| (e_value=7e-53) systemin receptor SR160 precursor [Zea mays];; (*SWP) sp|Q9T0K5|LRX3_ARATH (e_value=2e-50) Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1;; (*TAIR) AT4G13340.1 (e_value=2e-51) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:7758610-7760892 FORWARD LENGTH=760;; (*ITAG) Solyc06g074150.2.1 (e_value=9e-65) genomic_reference:SL2.40ch06 gene_region:42249811-42251423 transcript_region:SL2.40ch06:42249811..42251423+ go_terms:GO:0005515,GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515,GO:0005199 NbS00029736g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.77|0.68|1|0.88|0.89|19|720|525; (*GB) gi|359483196|ref|XP_002271299.2| (e_value=0.0) PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase-like [Vitis vinifera];; (*SWP) sp|Q551H4|FRAY2_DICDI (e_value=9e-89) Serine/threonine-protein kinase fray2 OS=Dictyostelium discoideum GN=fray2 PE=3 SV=1;; (*TAIR) AT1G79640.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc06g068590.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38903301-38910601 transcript_region:SL2.40ch06:38903301..38910601+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00059444g0006.1 protein AED:0.19 eAED:0.19 QI:0|1|0.83|1|0.8|0.66|6|827|189; (*GB) gi|225442030|ref|XP_002269039.1| (e_value=1e-64) PREDICTED: dnaJ homolog subfamily B member 7 [Vitis vinifera];; (*SWP) sp|Q0III6|DNJB6_BOVIN (e_value=1e-14) DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1;; (*TAIR) AT3G14200.1 (e_value=3e-55) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:4712881-4714361 REVERSE LENGTH=230;; (*ITAG) Solyc03g123560.2.1 (e_value=3e-68) genomic_reference:SL2.40ch03 gene_region:64425770-64428377 transcript_region:SL2.40ch03:64425770..64428377+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- B4FBY1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00059444g0010.1 protein AED:0.22 eAED:0.23 QI:0|0|0|0.8|0|0.4|5|0|326; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-31) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015855g0007.1 protein AED:0.17 eAED:0.19 QI:300|0.73|0.62|1|0.53|0.62|16|0|898; (*GB) gi|359490825|ref|XP_002273000.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252015 [Vitis vinifera];; (*TAIR) AT5G53620.3 (e_value=1e-154) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). | chr5:21781217-21785061 FORWARD LENGTH=682;; (*ITAG) Solyc03g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45953860-45961711 transcript_region:SL2.40ch03:45953860..45961711- go_terms:GO:0016887 functional_description:"Genomic DNA chromosome 5 P1 clone MNC6 (AHRD V1 ***- Q9FJC2_ARATH)"; GO:0016887 NbS00014498g0001.1 protein AED:0.34 eAED:0.34 QI:137|1|1|1|0.75|0.6|5|270|204; (*GB) gi|224063657|ref|XP_002301250.1| (e_value=8e-121) predicted protein [Populus trichocarpa];; (*SWP) sp|O82528|RL15_PETHY (e_value=2e-120) 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1;; (*TAIR) AT4G16720.1 (e_value=2e-116) | Symbols: | Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204;; (*ITAG) Solyc06g060400.2.1 (e_value=4e-127) genomic_reference:SL2.40ch06 gene_region:34803093-34805179 transcript_region:SL2.40ch06:34803093..34805179- go_terms:GO:0005840 functional_description:"Ribosomal protein L15 (AHRD V1 ***- B9GPA1_POPTR); contains Interpro domain(s) IPR000439 Ribosomal protein L15e "; GO:0005840 NbS00014498g0002.1 protein AED:0.14 eAED:0.20 QI:0|0|0|1|1|1|4|0|615; (*GB) gi|357506719|ref|XP_003623648.1| (e_value=0.0) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q56XI1|PPR25_ARATH (e_value=5e-155) Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2;; (*TAIR) AT1G09410.1 (e_value=4e-156) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:3035443-3037560 FORWARD LENGTH=705;; (*ITAG) Solyc06g064600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36648027-36650566 transcript_region:SL2.40ch06:36648027..36650566+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M3D7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC25673544g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|214; (*GB) gi|255540415|ref|XP_002511272.1| (e_value=1e-125) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9JID1|PDCD4_RAT (e_value=2e-24) Programmed cell death protein 4 OS=Rattus norvegicus GN=Pdcd4 PE=1 SV=2;; (*TAIR) AT5G63190.2 (e_value=2e-115) | Symbols: | MA3 domain-containing protein | chr5:25346145-25348563 FORWARD LENGTH=702;; (*ITAG) Solyc03g111640.2.1 (e_value=2e-139) genomic_reference:SL2.40ch03 gene_region:56321502-56328275 transcript_region:SL2.40ch03:56321502..56328275- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 4 gamma 2 (Fragment) (AHRD V1 *--- A3KQB2_DANRE); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00047817g0002.1 protein AED:0.08 eAED:0.08 QI:337|1|1|1|1|1|2|245|83; (*GB) gi|23466393|tpg|DAA00287.1| (e_value=3e-32) TPA: TPA_exp: putative phytosulfokine peptide precursor [Lycopersicon esculentum];; (*ITAG) Solyc02g092110.2.1 (e_value=5e-35) genomic_reference:SL2.40ch02 gene_region:47901342-47902019 transcript_region:SL2.40ch02:47901342..47902019+ go_terms:GO:0005576 functional_description:"Phytosulfokines 3 (AHRD V1 ***- PSK3_ARATH); contains Interpro domain(s) IPR009438 Phytosulfokine "; GO:0005576 NbS00017191g0001.1 protein AED:0.35 eAED:0.37 QI:0|0|0|1|1|1|2|0|80; (*GB) gi|255553502|ref|XP_002517792.1| (e_value=2e-14) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G57450.1 (e_value=8e-15) | Symbols: | unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21262028-21262318 FORWARD LENGTH=96;; (*ITAG) Solyc01g087570.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:74282128-74282675 transcript_region:SL2.40ch01:74282128..74282675- functional_description:"Unknown Protein (AHRD V1)"; NbC25888907g0001.1 protein AED:0.00 eAED:0.00 QI:51|-1|0|1|-1|1|1|179|48; (*ITAG) Solyc03g118510.2.1 (e_value=4e-15) genomic_reference:SL2.40ch03 gene_region:61406457-61409311 transcript_region:SL2.40ch03:61406457..61409311+ go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbC25888907g0002.1 protein AED:0.11 eAED:0.11 QI:72|0.33|0.25|0.5|0.66|0.5|4|489|63 NbS00038979g0003.1 protein AED:0.14 eAED:0.14 QI:226|1|1|1|1|1|8|225|479; (*GB) gi|225428408|ref|XP_002283712.1| (e_value=0.0) PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q949X7|DCDA1_ARATH (e_value=0.0) Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1;; (*TAIR) AT3G14390.1 (e_value=0.0) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484;; (*ITAG) Solyc01g109850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88449072-88454711 transcript_region:SL2.40ch01:88449072..88454711- go_terms:GO:0004040,GO:0008836 functional_description:"Diaminopimelate decarboxylase (AHRD V1 **** D2DKE7_SOYBN); contains Interpro domain(s) IPR002986 Diaminopimelate decarboxylase "; GO:0004040,GO:0008836 NbS00019818g0012.1 protein AED:0.10 eAED:0.10 QI:358|1|0.66|1|0.5|0.66|3|0|162; (*GB) gi|359495759|ref|XP_003635083.1| (e_value=2e-32) PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera];; (*SWP) sp|Q66GI1|CSPLT_ARATH (e_value=2e-22) CASP-like protein At4g37235 OS=Arabidopsis thaliana GN=At4g37235 PE=2 SV=1;; (*TAIR) AT4G37235.1 (e_value=2e-23) | Symbols: | Uncharacterised protein family (UPF0497) | chr4:17518052-17519671 FORWARD LENGTH=152;; (*ITAG) Solyc02g065420.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:31159294-31162507 transcript_region:SL2.40ch02:31159294..31162507+ functional_description:"UPF0497 membrane protein At3g50810 (AHRD V1 ***- U497K_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00019818g0001.1 protein AED:0.28 eAED:0.28 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|384038815|gb|AFH57998.1| (e_value=0.0) chloroplast PsbO2 precursor [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=0.0) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g065400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31151784-31154764 transcript_region:SL2.40ch02:31151784..31154764+ go_terms:GO:0008266,GO:0005515 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266,GO:0005515 NbS00019818g0018.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0.66|3|0|345; (*GB) gi|225462250|ref|XP_002263297.1| (e_value=7e-134) PREDICTED: pentatricopeptide repeat-containing protein At1g20230 [Vitis vinifera];; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=4e-71) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2;; (*TAIR) AT1G20230.1 (e_value=3e-72) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7009570-7011852 FORWARD LENGTH=760;; (*ITAG) Solyc02g065410.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31155025-31157082 transcript_region:SL2.40ch02:31155025..31157082- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019818g0002.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|89; (*GB) gi|225462250|ref|XP_002263297.1| (e_value=7e-35) PREDICTED: pentatricopeptide repeat-containing protein At1g20230 [Vitis vinifera];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=1e-22) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT3G57430.1 (e_value=1e-23) | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890;; (*ITAG) Solyc02g065410.1.1 (e_value=3e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31155025-31157082 transcript_region:SL2.40ch02:31155025..31157082- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00019818g0010.1 protein AED:0.59 eAED:0.63 QI:0|0|0|1|1|1|2|0|63; (*ITAG) Solyc02g065410.1.1 (e_value=5e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:31155025-31157082 transcript_region:SL2.40ch02:31155025..31157082- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017119g0018.1 protein AED:0.12 eAED:0.12 QI:248|0.5|0.4|1|0.5|0.4|5|391|623; (*GB) gi|359492313|ref|XP_002278157.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245489 [Vitis vinifera];; (*SWP) sp|Q8W4A7|GUX3_ARATH (e_value=0.0) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1;; (*TAIR) AT1G77130.1 (e_value=0.0) | Symbols: PGSIP2, GUX3 | plant glycogenin-like starch initiation protein 2 | chr1:28979066-28981228 REVERSE LENGTH=618;; (*ITAG) Solyc04g064790.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55056558-55061258 transcript_region:SL2.40ch04:55056558..55061258- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00017119g0019.1 protein AED:0.25 eAED:0.26 QI:0|0|0.33|0.66|1|1|3|0|828; (*GB) gi|225457763|ref|XP_002278177.1| (e_value=2e-71) PREDICTED: uncharacterized protein LOC100267803 [Vitis vinifera];; (*SWP) sp|Q6YYC0|C3H55_ORYSJ (e_value=2e-15) Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa subsp. japonica GN=Os08g0135800 PE=2 SV=1;; (*ITAG) Solyc04g064770.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:55030749-55033539 transcript_region:SL2.40ch04:55030749..55033539- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 38 (AHRD V1 *-*- C3H38_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00017119g0017.1 protein AED:0.26 eAED:0.26 QI:264|1|1|1|0.6|0.5|6|382|404; (*GB) gi|255574191|ref|XP_002528011.1| (e_value=1e-162) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZQ34|Y2433_ARATH (e_value=2e-124) Uncharacterized protein At2g24330 OS=Arabidopsis thaliana GN=At2g24330 PE=2 SV=1;; (*TAIR) AT4G31080.1 (e_value=6e-137) | Symbols: | Protein of unknown function (DUF2296) | chr4:15121186-15123072 FORWARD LENGTH=409;; (*ITAG) Solyc04g064810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:55094838-55101701 transcript_region:SL2.40ch04:55094838..55101701+ functional_description:"Lunapark b (AHRD V1 ***- A8DT12_HAPBU); contains Interpro domain(s) IPR019273 Protein of unknown function DUF2296 "; NbS00029675g0005.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|0|0.33|3|0|260; (*GB) gi|350537681|ref|NP_001234304.1| (e_value=5e-136) phosphoenolpyruvate carboxylase kinase 2 [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=2e-85) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.2 (e_value=1e-86) | Symbols: PPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753150 FORWARD LENGTH=276;; (*ITAG) Solyc09g090090.1.1 (e_value=3e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64987903-64989848 transcript_region:SL2.40ch09:64987903..64989848- go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010899g0103.1 protein AED:0.35 eAED:0.35 QI:654|0.87|0.94|0.94|0.87|0.82|17|0|318 NbS00010899g0117.1 protein AED:0.33 eAED:0.36 QI:0|0.81|0.70|1|0.62|0.64|17|0|720 NbS00010899g0105.1 protein AED:0.45 eAED:1.00 QI:0|-1|0|1|-1|1|1|0|178 NbS00010899g0106.1 protein AED:0.29 eAED:0.29 QI:307|1|0.5|1|0|0|2|0|113 NbS00010899g0210.1 protein AED:0.04 eAED:0.04 QI:652|1|1|1|1|1|7|1425|374 NbS00010899g0211.1 protein AED:0.25 eAED:0.25 QI:322|1|0.91|1|1|1|12|0|479 NbS00010899g0207.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|292 NbS00007287g0002.1 protein AED:0.07 eAED:0.07 QI:0|0|0|0.5|1|1|2|0|82; (*GB) gi|357477077|ref|XP_003608824.1| (e_value=4e-29) Subtilisin-like protease [Medicago truncatula];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-23) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=8e-29) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=1e-28) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00011341g0003.1 protein AED:0.27 eAED:0.28 QI:0|1|0.8|1|0.25|0.4|5|642|244; (*GB) gi|225456024|ref|XP_002279751.1| (e_value=3e-35) PREDICTED: uncharacterized protein LOC100245764 [Vitis vinifera];; (*TAIR) AT1G73760.1 (e_value=3e-26) | Symbols: | RING/U-box superfamily protein | chr1:27739366-27741161 REVERSE LENGTH=367;; (*ITAG) Solyc03g118840.2.1 (e_value=3e-55) genomic_reference:SL2.40ch03 gene_region:61692728-61696244 transcript_region:SL2.40ch03:61692728..61696244+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00059297g0004.1 protein AED:0.33 eAED:0.33 QI:84|0.8|0.83|1|0.4|0.33|6|114|221; (*GB) gi|225438635|ref|XP_002281281.1| (e_value=1e-86) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SCY3|FK162_ARATH (e_value=1e-76) Peptidyl-prolyl cis-trans isomerase FKBP16-2, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-2 PE=1 SV=1;; (*TAIR) AT4G39710.1 (e_value=7e-78) | Symbols: FKBP16-2 | FK506-binding protein 16-2 | chr4:18427249-18428325 REVERSE LENGTH=217;; (*ITAG) Solyc04g054520.2.1 (e_value=6e-113) genomic_reference:SL2.40ch04 gene_region:51791628-51795738 transcript_region:SL2.40ch04:51791628..51795738- go_terms:GO:0005528 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *-*- D8PA41_9BACT); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00016761g0012.1 protein AED:0.10 eAED:0.11 QI:0|0|0.33|1|0.5|0.66|3|0|1319; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=0.0) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=6e-141) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=5e-142) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g071430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51993677-51997466 transcript_region:SL2.40ch11:51993677..51997466+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00016761g0011.1 protein AED:0.19 eAED:0.19 QI:267|0.5|0.33|1|0.5|0.33|3|0|140; (*GB) gi|225435820|ref|XP_002285768.1| (e_value=1e-59) PREDICTED: uncharacterized protein LOC100245017 [Vitis vinifera];; (*TAIR) AT1G55535.2 (e_value=8e-53) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:20732107-20733802 REVERSE LENGTH=250;; (*ITAG) Solyc01g050070.2.1 (e_value=1e-79) genomic_reference:SL2.40ch01 gene_region:43398830-43421486 transcript_region:SL2.40ch01:43398830..43421486- functional_description:"Genomic DNA chromosome 3 P1 clone MRP15 (AHRD V1 *-*- Q9LJF0_ARATH)"; NbS00025140g0006.1 protein AED:0.08 eAED:0.08 QI:0|0.75|0.4|1|0.5|0.2|5|0|341; (*GB) gi|255544083|ref|XP_002513104.1| (e_value=4e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29050.1 (e_value=2e-116) | Symbols: TBL38 | TRICHOME BIREFRINGENCE-LIKE 38 | chr1:10136376-10139082 REVERSE LENGTH=380;; (*ITAG) Solyc01g068420.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70063083-70065604 transcript_region:SL2.40ch01:70063083..70065604+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00025140g0007.1 protein AED:0.12 eAED:0.12 QI:0|0.25|0|0.8|0.5|0.6|5|0|307; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=9e-121) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=1e-85) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=9e-87) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=2e-123) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00012558g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|1|3|0|128; (*GB) gi|359476539|ref|XP_003631855.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100252715 [Vitis vinifera];; (*TAIR) AT3G54310.1 (e_value=9e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38430.1); Has 44 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20111153-20112944 REVERSE LENGTH=358;; (*ITAG) Solyc04g050920.2.1 (e_value=3e-49) genomic_reference:SL2.40ch04 gene_region:48128774-48132067 transcript_region:SL2.40ch04:48128774..48132067+ go_terms:GO:0006810 functional_description:"Os02g0504100 protein (Fragment) (AHRD V1 *-*- Q0E114_ORYSJ)"; GO:0006810 NbS00024259g0012.1 protein AED:0.17 eAED:0.17 QI:228|1|1|1|0.88|0.9|10|733|232; (*GB) gi|224146010|ref|XP_002325846.1| (e_value=2e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRV7|SY131_ARATH (e_value=1e-103) Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1;; (*TAIR) AT3G03800.1 (e_value=1e-104) | Symbols: SYP131, ATSYP131 | syntaxin of plants 131 | chr3:969314-971460 FORWARD LENGTH=306;; (*ITAG) Solyc01g056810.2.1 (e_value=2e-127) genomic_reference:SL2.40ch01 gene_region:49645460-49655527 transcript_region:SL2.40ch01:49645460..49655527- go_terms:GO:0008565 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0008565 NbS00024259g0013.1 protein AED:0.19 eAED:0.22 QI:0|0|0|0.75|1|1|4|0|291; (*GB) gi|296089301|emb|CBI39073.3| (e_value=7e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-50) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G38040.1 (e_value=6e-65) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc12g062940.1.1 (e_value=1e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:53875860-53882435 transcript_region:SL2.40ch12:53875860..53882435+ go_terms:GO:0003824 functional_description:"Exostosin-like (AHRD V1 ***- Q2HVN7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00024259g0019.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|0.5|0.33|3|251|356; (*GB) gi|296089301|emb|CBI39073.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=5e-71) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT4G38040.1 (e_value=9e-94) | Symbols: | Exostosin family protein | chr4:17867501-17869131 FORWARD LENGTH=425;; (*ITAG) Solyc12g062940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:53875860-53882435 transcript_region:SL2.40ch12:53875860..53882435+ go_terms:GO:0003824 functional_description:"Exostosin-like (AHRD V1 ***- Q2HVN7_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00024259g0014.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|154; (*GB) gi|15218810|ref|NP_174202.1| (e_value=6e-29) 50S ribosomal protein L34 [Arabidopsis thaliana];; (*SWP) sp|Q9LP37|RK34_ARATH (e_value=2e-30) 50S ribosomal protein L34, chloroplastic OS=Arabidopsis thaliana GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G29070.1 (e_value=1e-31) | Symbols: | Ribosomal protein L34 | chr1:10149884-10151155 FORWARD LENGTH=157;; (*ITAG) Solyc01g056780.2.1 (e_value=1e-48) genomic_reference:SL2.40ch01 gene_region:49444478-49445701 transcript_region:SL2.40ch01:49444478..49445701+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L34 (AHRD V1 *-*- D7KDQ0_ARALY); contains Interpro domain(s) IPR000271 Ribosomal protein L34 "; GO:0005840 NbS00017583g0001.1 protein AED:0.00 eAED:0.01 QI:414|1|0.66|1|0|0|3|0|608; (*GB) gi|356505620|ref|XP_003521588.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100800231 [Glycine max];; (*TAIR) AT4G02100.1 (e_value=0.0) | Symbols: | Heat shock protein DnaJ with tetratricopeptide repeat | chr4:930228-932049 FORWARD LENGTH=546;; (*ITAG) Solyc06g009670.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:3613117-3615972 transcript_region:SL2.40ch06:3613117..3615972- go_terms:GO:0005488,GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7M452_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0031072 NbS00017583g0003.1 protein AED:0.71 eAED:0.71 QI:0|0|0|0.33|1|1|3|0|74 NbS00017583g0009.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|1|1|2|0|150; (*GB) gi|1616612|emb|CAA69699.1| (e_value=1e-94) small GTP-binding protein [Nicotiana plumbaginifolia];; (*SWP) sp|O04834|SAR1A_ARATH (e_value=2e-92) GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1;; (*TAIR) AT4G02080.1 (e_value=1e-93) | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated RAS super family 2 | chr4:921554-922547 FORWARD LENGTH=193;; (*ITAG) Solyc06g009660.2.1 (e_value=1e-95) genomic_reference:SL2.40ch06 gene_region:3608115-3612636 transcript_region:SL2.40ch06:3608115..3612636+ go_terms:GO:0003924 functional_description:"ADP-ribosylation factor-like protein 3 (AHRD V1 **-- ARL3_CAEEL); contains Interpro domain(s) IPR006687 GTP-binding protein SAR1 "; GO:0003924 NbS00008695g0018.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0.33|3|0|250; (*GB) gi|226320270|gb|ACO48253.1| (e_value=5e-102) acyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZTK5|DAT_CATRO (e_value=1e-13) Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1;; (*ITAG) Solyc02g081740.1.1 (e_value=1e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40149035-40150445 transcript_region:SL2.40ch02:40149035..40150445- go_terms:GO:0016740 functional_description:"Acyltransferase (Fragment) (AHRD V1 **-- C1JZ77_9SOLA); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00008695g0019.1 protein AED:0.25 eAED:0.39 QI:0|0|0.33|0.66|1|1|3|113|86 NbS00030427g0007.1 protein AED:0.21 eAED:0.21 QI:310|0.85|0.5|1|0.71|0.62|8|0|705; (*GB) gi|147821305|emb|CAN74588.1| (e_value=0.0) hypothetical protein VITISV_041991 [Vitis vinifera];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=7e-114) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT4G02010.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:881457-885222 FORWARD LENGTH=725;; (*ITAG) Solyc01g079340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70944255-70951735 transcript_region:SL2.40ch01:70944255..70951735+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00030427g0002.1 protein AED:0.42 eAED:0.52 QI:0|0|0|0.66|1|1|3|0|66 NbS00031426g0004.1 protein AED:0.05 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|478; (*GB) gi|359488346|ref|XP_002279418.2| (e_value=6e-162) PREDICTED: uncharacterized protein LOC100261795 [Vitis vinifera];; (*TAIR) AT5G15900.1 (e_value=1e-127) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g089700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46022095-46023951 transcript_region:SL2.40ch02:46022095..46023951+ functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00042732g0004.1 protein AED:0.30 eAED:0.36 QI:0|0.83|0.71|1|0.33|0.57|7|554|198; (*GB) gi|296086416|emb|CBI32005.3| (e_value=4e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|P25866|UBC2_WHEAT (e_value=1e-109) Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1;; (*TAIR) AT2G02760.1 (e_value=3e-110) | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating enzyme 2 | chr2:774271-775149 FORWARD LENGTH=152;; (*ITAG) Solyc02g087750.2.1 (e_value=3e-113) genomic_reference:SL2.40ch02 gene_region:44634950-44640059 transcript_region:SL2.40ch02:44634950..44640059+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 2 (AHRD V1 ***- UBC2_WHEAT); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00011445g0008.1 protein AED:0.16 eAED:0.16 QI:722|1|1|1|1|1|4|359|190; (*GB) gi|225445452|ref|XP_002285091.1| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100261198 [Vitis vinifera];; (*TAIR) AT5G20120.1 (e_value=4e-67) | Symbols: | unknown protein; Has 54 Blast hits to 54 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr5:6795889-6796921 FORWARD LENGTH=188;; (*ITAG) Solyc12g006660.1.1 (e_value=1e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1122820-1125860 transcript_region:SL2.40ch12:1122820..1125860+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011445g0012.1 protein AED:0.23 eAED:0.23 QI:202|1|0.88|1|0.87|0.88|9|167|282; (*GB) gi|255575074|ref|XP_002528442.1| (e_value=6e-127) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25570.3 (e_value=5e-125) | Symbols: | binding | chr2:10885881-10887842 REVERSE LENGTH=288;; (*ITAG) Solyc12g006670.1.1 (e_value=9e-134) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1128380-1132905 transcript_region:SL2.40ch12:1128380..1132905+ go_terms:GO:0005488 functional_description:"Sel1 domain protein repeat-containing protein (AHRD V1 *--- A8TPT4_9PROT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011445g0003.1 protein AED:0.06 eAED:0.06 QI:125|0.83|0.71|1|1|1|7|336|310; (*GB) gi|225453598|ref|XP_002264648.1| (e_value=8e-133) PREDICTED: ribosome biogenesis regulatory protein homolog [Vitis vinifera];; (*SWP) sp|Q9SH88|RRS1_ARATH (e_value=5e-116) Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2;; (*TAIR) AT2G37990.1 (e_value=4e-117) | Symbols: | ribosome biogenesis regulatory protein (RRS1) family protein | chr2:15900713-15903028 FORWARD LENGTH=318;; (*ITAG) Solyc12g006550.1.1 (e_value=2e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1059635-1063850 transcript_region:SL2.40ch12:1059635..1063850+ go_terms:GO:0005634 functional_description:"Ribosome biogenesis regulatory protein homolog (AHRD V1 ***- B5XEG4_SALSA); contains Interpro domain(s) IPR007023 Ribosomal biogenesis regulatory protein "; GO:0005634 NbS00007384g0005.1 protein AED:0.13 eAED:0.13 QI:384|1|1|1|1|1|2|364|658; (*GB) gi|225438793|ref|XP_002283167.1| (e_value=0.0) PREDICTED: probable inactive receptor kinase At5g67200 isoform 1 [Vitis vinifera];; (*SWP) sp|Q93Y06|Y5720_ARATH (e_value=0.0) Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1;; (*TAIR) AT5G67200.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:26813893-26816555 REVERSE LENGTH=669;; (*ITAG) Solyc02g093100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48601105-48604496 transcript_region:SL2.40ch02:48601105..48604496+ go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00007384g0008.1 protein AED:0.37 eAED:0.37 QI:291|0.66|1|1|0.33|0.5|4|543|97; (*GB) gi|37719049|emb|CAE45567.1| (e_value=3e-51) SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana];; (*SWP) sp|Q42551|SCE1_ARATH (e_value=6e-48) SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1;; (*TAIR) AT3G57870.1 (e_value=4e-49) | Symbols: AHUS5, EMB1637, SCE1, SCE1A, ATSCE1 | sumo conjugation enzyme 1 | chr3:21428831-21430110 REVERSE LENGTH=160;; (*ITAG) Solyc03g044260.2.1 (e_value=4e-53) genomic_reference:SL2.40ch03 gene_region:12566720-12571878 transcript_region:SL2.40ch03:12566720..12571878+ go_terms:GO:0019789 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0019789 NbS00002072g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.92|0.85|1|0.76|0.71|14|0|961; (*GB) gi|17384016|emb|CAC87256.1| (e_value=0.0) NADPH oxidase [Nicotiana tabacum];; (*SWP) sp|Q948U0|RBOHA_SOLTU (e_value=0.0) Respiratory burst oxidase homolog protein A OS=Solanum tuberosum GN=RBOHA PE=1 SV=1;; (*TAIR) AT1G64060.1 (e_value=0.0) | Symbols: ATRBOH F, ATRBOHF, RBOHAP108, RBOHF, RBOH F | respiratory burst oxidase protein F | chr1:23770266-23776317 FORWARD LENGTH=944;; (*ITAG) Solyc08g081690.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61837362-61846684 transcript_region:SL2.40ch08:61837362..61846684+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase (AHRD V1 **** D7KSW1_ARALY); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00002072g0006.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|99; (*GB) gi|57013921|ref|YP_173394.1| (e_value=3e-36) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=3e-35) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00830.1 (e_value=2e-38) | Symbols: CCB382 | cytochrome C biogenesis 382 | chrM:231894-233042 REVERSE LENGTH=382;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00020968g0005.1 protein AED:0.00 eAED:0.00 QI:47|1|1|1|1|1|2|148|548; (*GB) gi|255550283|ref|XP_002516192.1| (e_value=0.0) Pectinesterase PPE8B precursor, putative [Ricinus communis];; (*SWP) sp|O48711|PME12_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1;; (*TAIR) AT2G26440.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:11247407-11249407 FORWARD LENGTH=547;; (*ITAG) Solyc05g047590.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58238836-58241343 transcript_region:SL2.40ch05:58238836..58241343- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0SPH5_PRUPE); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00020968g0003.1 protein AED:0.39 eAED:0.59 QI:0|0|0|1|1|1|2|0|141; (*GB) gi|290488996|gb|ADD30882.1| (e_value=3e-36) putative RF2 protein [Ehretia acuminata];; (*SWP) sp|P09976|YCF2_TOBAC (e_value=1e-37) Protein ycf2 OS=Nicotiana tabacum GN=ycf2-A PE=3 SV=2;; (*ITAG) ATCG01280.1 (e_value=2e-35) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc12g070220.1.1 (e_value=3e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:55254932-55255567 transcript_region:SL2.40ch12:55254932..55255567+ go_terms:GO:0005524 functional_description:"Ycf2 (AHRD V1 *-*- D2KLP5_OLEEU)"; GO:0005524 NbS00055581g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.75|1|1|1|8|325|565; (*GB) gi|157837031|pdb|5EAU|A (e_value=0.0) Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=0.0) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT5G23960.2 (e_value=1e-129) | Symbols: TPS21 | terpene synthase 21 | chr5:8092969-8095128 FORWARD LENGTH=545;; (*ITAG) Solyc01g101170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00008315g0005.1 protein AED:0.22 eAED:0.22 QI:176|1|1|1|1|1|2|352|213; (*GB) gi|255539923|ref|XP_002511026.1| (e_value=7e-101) cyclin-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|O80513|CCU41_ARATH (e_value=4e-88) Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1;; (*TAIR) AT2G44740.1 (e_value=3e-89) | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18442287-18443304 REVERSE LENGTH=202;; (*ITAG) Solyc03g093790.2.1 (e_value=8e-103) genomic_reference:SL2.40ch03 gene_region:48917947-48921541 transcript_region:SL2.40ch03:48917947..48921541+ go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin-like (AHRD V1 **** Q6H3X9_ORYSJ); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00053804g0007.1 protein AED:0.15 eAED:0.15 QI:37|1|1|1|0.8|0.90|11|388|739; (*GB) gi|359484359|ref|XP_002280934.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242283 [Vitis vinifera];; (*SWP) sp|B3CLY6|TILS_WOLPP (e_value=4e-24) tRNA(Ile)-lysidine synthase OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=tilS PE=3 SV=1;; (*TAIR) AT3G24560.2 (e_value=0.0) | Symbols: RSY3 | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:8963788-8966494 FORWARD LENGTH=660;; (*ITAG) Solyc11g067030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49880010-49882781 transcript_region:SL2.40ch11:49880010..49882781- functional_description:"RASPBERRY3 (AHRD V1 **-- Q8RY55_ARATH)"; NbS00053804g0010.1 protein AED:0.09 eAED:0.13 QI:4|0.71|0.62|1|0.85|0.87|8|351|219; (*GB) gi|147822590|emb|CAN75079.1| (e_value=3e-134) hypothetical protein VITISV_007579 [Vitis vinifera];; (*SWP) sp|Q8H0W2|HDA9_ARATH (e_value=1e-125) Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1;; (*TAIR) AT3G44680.1 (e_value=1e-126) | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr3:16226769-16229752 REVERSE LENGTH=426;; (*ITAG) Solyc11g067020.1.1 (e_value=4e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49871976-49879313 transcript_region:SL2.40ch11:49871976..49879313+ go_terms:GO:0005634,GO:0016575 functional_description:"Histone deacetylase (AHRD V1 ***- B9GGG8_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0005634,GO:0016575 NbS00009533g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|90; (*GB) gi|186532397|ref|NP_001119444.1| (e_value=2e-21) ubiquitin-related modifier [Arabidopsis thaliana];; (*SWP) sp|B3H5R8|SUMO8_ARATH (e_value=6e-23) Putative small ubiquitin-related modifier 8 OS=Arabidopsis thaliana GN=SUMO8 PE=1 SV=1;; (*TAIR) AT5G55856.1 (e_value=4e-24) | Symbols: | Ubiquitin-like superfamily protein | chr5:22607927-22608640 FORWARD LENGTH=97;; (*ITAG) Solyc07g049360.2.1 (e_value=3e-17) genomic_reference:SL2.40ch07 gene_region:56958023-56960587 transcript_region:SL2.40ch07:56958023..56960587- go_terms:GO:0008134,GO:0031386 functional_description:"Small ubiquitin-related modifier 2 (AHRD V1 ***- C3KI25_ANOFI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0008134,GO:0031386 NbS00009533g0013.1 protein AED:0.22 eAED:0.22 QI:0|1|0.77|1|0.87|0.77|9|196|613; (*GB) gi|359476610|ref|XP_003631864.1| (e_value=0.0) PREDICTED: riboflavin biosynthesis protein RibD-like [Vitis vinifera];; (*SWP) sp|Q55158|RIBD_SYNY3 (e_value=4e-83) Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribD PE=3 SV=1;; (*TAIR) AT3G47390.2 (e_value=0.0) | Symbols: PHS1 | cytidine/deoxycytidylate deaminase family protein | chr3:17462094-17464655 FORWARD LENGTH=596;; (*ITAG) Solyc04g056540.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53638377-53647853 transcript_region:SL2.40ch04:53638377..53647853+ go_terms:GO:0008835 functional_description:"Riboflavin biosynthesis protein RibD (AHRD V1 ***- B2J2B9_NOSP7); contains Interpro domain(s) IPR004794 Riboflavin biosynthesis protein RibD "; GO:0008835 NbS00009533g0001.1 protein AED:0.25 eAED:0.25 QI:198|0.33|0.5|0.75|0.66|0.5|4|0|297; (*GB) gi|224125410|ref|XP_002319579.1| (e_value=6e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08845.2 (e_value=3e-90) | Symbols: | Ribosomal L18p/L5e family protein | chr1:2838789-2840955 FORWARD LENGTH=234;; (*ITAG) Solyc01g111810.2.1 (e_value=8e-100) genomic_reference:SL2.40ch01 gene_region:89737898-89739683 transcript_region:SL2.40ch01:89737898..89739683+ go_terms:GO:0005840 functional_description:"Structural constituent of ribosome (AHRD V1 **-- D7KIV9_ARALY); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5 "; GO:0005840 NbS00048079g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|104; (*GB) gi|57014003|ref|YP_173474.1| (e_value=2e-34) hypothetical protein NitaMp137 [Nicotiana tabacum];; (*TAIR) AT4G34860.2 (e_value=3e-23) | Symbols: | Plant neutral invertase family protein | chr4:16609955-16612019 REVERSE LENGTH=571;; (*ITAG) Solyc00g021660.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11974428-11975748 transcript_region:SL2.40ch00:11974428..11975748- functional_description:"Neutral invertase-like protein (Fragment) (AHRD V1 ***- Q75UP5_IPOBA); contains Interpro domain(s) IPR006937 Plant neutral invertase "; NbS00048079g0005.1 protein AED:0.81 eAED:0.99 QI:0|0|0|0.5|0|0|2|0|133 NbS00042936g0007.1 protein AED:0.15 eAED:0.15 QI:182|0.85|0.75|1|0.85|0.87|8|0|473; (*GB) gi|225425204|ref|XP_002266641.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250497 [Vitis vinifera];; (*TAIR) AT1G69040.1 (e_value=3e-168) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25958196-25960079 FORWARD LENGTH=451;; (*ITAG) Solyc01g010000.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00042936g0009.1 protein AED:0.26 eAED:0.26 QI:236|0.83|0.85|1|0.66|0.85|7|269|231; (*GB) gi|255547634|ref|XP_002514874.1| (e_value=7e-110) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|Q9ASS6|CP20B_ARATH (e_value=8e-105) Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1;; (*TAIR) AT5G13120.2 (e_value=5e-106) | Symbols: CYP20-2 | cyclophilin 20-2 | chr5:4162714-4164720 REVERSE LENGTH=255;; (*ITAG) Solyc01g009990.2.1 (e_value=1e-122) genomic_reference:SL2.40ch01 gene_region:4594127-4598093 transcript_region:SL2.40ch01:4594127..4598093+ go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B9RMA5_RICCO); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbS00046758g0002.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|384; (*GB) gi|356538160|ref|XP_003537572.1| (e_value=4e-99) PREDICTED: pentatricopeptide repeat-containing protein At4g38150-like [Glycine max];; (*SWP) sp|Q9SZL5|PP356_ARATH (e_value=3e-93) Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1;; (*TAIR) AT4G38150.2 (e_value=3e-94) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:17901211-17902119 REVERSE LENGTH=302;; (*ITAG) Solyc12g096140.1.1 (e_value=6e-166) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63520457-63521479 transcript_region:SL2.40ch12:63520457..63521479- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MEW5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00046758g0005.1 protein AED:0.02 eAED:0.02 QI:31|1|1|1|1|1|4|271|206; (*GB) gi|224139102|ref|XP_002326768.1| (e_value=8e-122) predicted protein [Populus trichocarpa];; (*SWP) sp|P41127|RL131_ARATH (e_value=5e-120) 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1;; (*TAIR) AT3G49010.3 (e_value=4e-121) | Symbols: ATBBC1, BBC1, RSU2 | breast basic conserved 1 | chr3:18166971-18168047 REVERSE LENGTH=206;; (*ITAG) Solyc12g096150.1.1 (e_value=1e-121) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63525594-63526796 transcript_region:SL2.40ch12:63525594..63526796+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0005840 NbS00036161g0006.1 protein AED:0.27 eAED:0.36 QI:0|0.5|0|1|0.5|0.33|3|0|237; (*GB) gi|224090927|ref|XP_002309119.1| (e_value=4e-54) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09050.1 (e_value=5e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 120 Blast hits to 120 proteins in 47 species: Archae - 4; Bacteria - 10; Metazoa - 33; Fungi - 2; Plants - 44; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr3:2764860-2765907 FORWARD LENGTH=258;; (*ITAG) Solyc10g085080.1.1 (e_value=2e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:63720057-63721795 transcript_region:SL2.40ch10:63720057..63721795- functional_description:"Unknown Protein (AHRD V1)"; NbS00030208g0012.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|1|1|3|0|233; (*GB) gi|100801744|emb|CAK24966.1| (e_value=1e-158) chlorophyll a/b binding protein [Solanum tuberosum];; (*SWP) sp|Q9SQL2|CB24_PEA (e_value=1e-147) Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1;; (*TAIR) AT3G47470.1 (e_value=3e-148) | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251;; (*ITAG) Solyc03g115900.2.1 (e_value=8e-162) genomic_reference:SL2.40ch03 gene_region:59544549-59546188 transcript_region:SL2.40ch03:59544549..59546188+ go_terms:GO:0016020 functional_description:"Chlorophyll a-b binding protein P4, chloroplastic (AHRD V1 ***- CB24_PEA); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016020 NbS00030208g0001.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.5|0.75|1|1|4|492|223; (*GB) gi|350538891|ref|NP_001234364.1| (e_value=2e-103) expansin precursor [Solanum lycopersicum];; (*SWP) sp|O80622|EXP15_ARATH (e_value=8e-95) Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2;; (*TAIR) AT2G03090.1 (e_value=6e-96) | Symbols: ATEXPA15, EXP15, ATEXP15, ATHEXP ALPHA 1.3, EXPA15 | expansin A15 | chr2:917361-918554 REVERSE LENGTH=253;; (*ITAG) Solyc03g115890.2.1 (e_value=4e-106) genomic_reference:SL2.40ch03 gene_region:59540713-59542201 transcript_region:SL2.40ch03:59540713..59542201+ go_terms:GO:0005199 functional_description:"Expansin (AHRD V1 ***- Q9FVG9_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005199 NbS00030208g0003.1 protein AED:0.38 eAED:0.41 QI:136|0.14|0.12|0.87|0.85|0.75|8|0|271; (*GB) gi|217075024|gb|ACJ85872.1| (e_value=2e-44) unknown [Medicago truncatula];; (*SWP) sp|Q03416|GLOB_TOBAC (e_value=5e-14) Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1;; (*TAIR) AT1G18750.1 (e_value=5e-42) | Symbols: AGL65 | AGAMOUS-like 65 | chr1:6467266-6469640 FORWARD LENGTH=389;; (*ITAG) Solyc03g115910.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59546157-59551248 transcript_region:SL2.40ch03:59546157..59551248- go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00002137g0106.1 protein AED:0.12 eAED:0.12 QI:170|1|1|1|1|1|2|269|398 NbS00002137g0206.1 protein AED:0.30 eAED:0.31 QI:550|1|0.5|1|1|1|2|0|178 NbS00002137g0203.1 protein AED:0.38 eAED:0.38 QI:0|0|0|0.5|1|1|2|0|68 NbS00001663g0001.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|3|0|464; (*GB) gi|225441890|ref|XP_002284381.1| (e_value=3e-168) PREDICTED: zeatin O-glucosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=3e-140) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT2G36770.1 (e_value=2e-51) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:15415227-15416717 REVERSE LENGTH=496;; (*ITAG) Solyc04g008310.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:1986217-1987629 transcript_region:SL2.40ch04:1986217..1987629- go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q2VA65_SOYBN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00001663g0010.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|3|0|390; (*GB) gi|19743740|gb|AAL92461.1| (e_value=7e-173) putative glucosyltransferase [Solanum lycopersicum];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=9e-114) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*TAIR) AT5G14860.1 (e_value=6e-31) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:4805887-4807759 FORWARD LENGTH=492;; (*ITAG) Solyc04g016200.1.1 (e_value=1e-175) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:6972353-6973708 transcript_region:SL2.40ch04:6972353..6973708+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase HvUGT5876 (AHRD V1 **** D3WYW1_HORVD); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00014821g0001.1 protein AED:0.10 eAED:0.10 QI:67|0.88|0.8|1|1|1|10|247|447; (*GB) gi|224144167|ref|XP_002325207.1| (e_value=6e-147) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Z569|BRAP_HUMAN (e_value=1e-51) BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2;; (*TAIR) AT2G42160.1 (e_value=1e-132) | Symbols: BRIZ1 | zinc finger (ubiquitin-hydrolase) domain-containing protein | chr2:17574843-17577397 REVERSE LENGTH=488;; (*ITAG) Solyc07g008050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2762487-2767317 transcript_region:SL2.40ch07:2762487..2767317- go_terms:GO:0042802,GO:0008139 functional_description:"RING finger protein (AHRD V1 **-- B6JVU3_SCHJY); contains Interpro domain(s) IPR001607 Zinc finger, UBP-type "; GO:0042802,GO:0008139 NbS00014821g0010.1 protein AED:0.13 eAED:0.13 QI:198|0.96|0.92|1|0.88|0.88|26|0|1134; (*GB) gi|359484207|ref|XP_002285341.2| (e_value=0.0) PREDICTED: topless-related protein 4-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q27GK7|TPR4_ARATH (e_value=0.0) Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2;; (*TAIR) AT3G15880.1 (e_value=0.0) | Symbols: WSIP2, TPR4 | WUS-interacting protein 2 | chr3:5364792-5371869 REVERSE LENGTH=1135;; (*ITAG) Solyc07g008040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2754512-2761546 transcript_region:SL2.40ch07:2754512..2761546+ go_terms:GO:0042803,GO:0016564 functional_description:"WD-40 repeat protein-like (Fragment) (AHRD V1 *--- Q1HIU4_9ROSI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0042803,GO:0016564 NbS00026238g0017.1 protein AED:0.13 eAED:0.13 QI:173|1|1|1|0|0|3|498|472; (*GB) gi|255549331|ref|XP_002515719.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*TAIR) AT1G05280.1 (e_value=5e-156) | Symbols: | Protein of unknown function (DUF604) | chr1:1535444-1537414 REVERSE LENGTH=461;; (*ITAG) Solyc12g005730.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:387824-390117 transcript_region:SL2.40ch12:387824..390117- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00026238g0016.1 protein AED:0.15 eAED:0.19 QI:0|0|0|0.8|0.75|0.6|5|0|362; (*GB) gi|359806648|ref|NP_001241023.1| (e_value=2e-87) zinc finger protein CONSTANS-LIKE 12-like [Glycine max];; (*SWP) sp|Q9LJ44|COL12_ARATH (e_value=8e-57) Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2;; (*TAIR) AT3G21880.1 (e_value=6e-58) | Symbols: | B-box type zinc finger protein with CCT domain | chr3:7706748-7708093 FORWARD LENGTH=364;; (*ITAG) Solyc05g046040.1.1 (e_value=5e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:57316966-57319191 transcript_region:SL2.40ch05:57316966..57319191+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00026238g0018.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|214; (*GB) gi|297739317|emb|CBI28968.3| (e_value=2e-85) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G05280.1 (e_value=3e-56) | Symbols: | Protein of unknown function (DUF604) | chr1:1535444-1537414 REVERSE LENGTH=461;; (*ITAG) Solyc12g005730.1.1 (e_value=7e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:387824-390117 transcript_region:SL2.40ch12:387824..390117- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbS00026238g0011.1 protein AED:0.50 eAED:0.50 QI:374|0.16|0.28|0.57|1|1|7|0|290; (*ITAG) Solyc12g005770.1.1 (e_value=2e-58) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:415079-426833 transcript_region:SL2.40ch12:415079..426833- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 13 (AHRD V1 ***- C3H13_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00026238g0014.1 protein AED:0.20 eAED:0.20 QI:206|1|1|1|0.62|0.55|9|410|266; (*GB) gi|225447340|ref|XP_002280526.1| (e_value=3e-141) PREDICTED: peroxisome biogenesis protein 22 [Vitis vinifera];; (*SWP) sp|Q9LSX7|PEX22_ARATH (e_value=1e-116) Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22 PE=1 SV=1;; (*TAIR) AT3G21865.1 (e_value=1e-117) | Symbols: PEX22 | peroxin 22 | chr3:7701308-7703218 REVERSE LENGTH=283;; (*ITAG) Solyc12g005760.1.1 (e_value=3e-161) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:402796-411288 transcript_region:SL2.40ch12:402796..411288+ functional_description:"Genomic DNA chromosome 3 P1 clone MSD21 (AHRD V1 **-- Q9LSX7_ARATH)"; NbS00036319g0006.1 protein AED:0.27 eAED:0.28 QI:1097|0|0.33|0.66|0|0.66|3|176|135; (*GB) gi|147821409|emb|CAN63504.1| (e_value=1e-14) hypothetical protein VITISV_011679 [Vitis vinifera];; (*ITAG) Solyc12g006620.1.1 (e_value=6e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1091458-1095287 transcript_region:SL2.40ch12:1091458..1095287+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 34 (AHRD V1 ***- C3H34_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00047914g0004.1 protein AED:0.12 eAED:0.15 QI:0|0.7|0.63|1|0.2|0.36|11|0|618; (*GB) gi|559921|emb|CAA56570.1| (e_value=0.0) axi 1 [Nicotiana tabacum];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-67) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT1G20550.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr1:7115485-7117936 REVERSE LENGTH=564;; (*ITAG) Solyc10g074490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57364037-57368763 transcript_region:SL2.40ch10:57364037..57368763- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00035738g0005.1 protein AED:0.13 eAED:0.13 QI:774|0|0|1|0|0.33|3|0|485; (*GB) gi|225443918|ref|XP_002271548.1| (e_value=5e-101) PREDICTED: transcription factor TCP2-like [Vitis vinifera];; (*SWP) sp|Q93V43|TCP2_ARATH (e_value=3e-35) Transcription factor TCP2 OS=Arabidopsis thaliana GN=TCP2 PE=2 SV=1;; (*TAIR) AT4G18390.2 (e_value=2e-36) | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 | chr4:10163212-10164309 REVERSE LENGTH=365;; (*ITAG) Solyc08g048390.1.1 (e_value=1e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:39810608-39811771 transcript_region:SL2.40ch08:39810608..39811771+ go_terms:GO:0003700 functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-** CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; GO:0003700 NbS00000058g0017.1 protein AED:0.09 eAED:0.09 QI:0|0.55|0.6|0.7|0.66|0.7|10|404|356; (*GB) gi|255549544|ref|XP_002515824.1| (e_value=3e-148) Protein SEY1, putative [Ricinus communis];; (*SWP) sp|Q9FKE9|RD3H2_ARATH (e_value=3e-145) Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1;; (*TAIR) AT5G45160.1 (e_value=3e-146) | Symbols: | Root hair defective 3 GTP-binding protein (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834;; (*ITAG) Solyc02g030450.2.1 (e_value=2e-172) genomic_reference:SL2.40ch02 gene_region:16577479-16606006 transcript_region:SL2.40ch02:16577479..16606006- go_terms:GO:0042802,GO:0003924 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0042802,GO:0003924 NbS00000058g0016.1 protein AED:0.23 eAED:0.26 QI:0|0.76|0.71|1|0.76|0.85|14|0|369; (*GB) gi|356555849|ref|XP_003546242.1| (e_value=0.0) PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max];; (*SWP) sp|Q9FKE9|RD3H2_ARATH (e_value=2e-173) Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1;; (*TAIR) AT5G45160.1 (e_value=1e-174) | Symbols: | Root hair defective 3 GTP-binding protein (RHD3) | chr5:18264991-18270035 FORWARD LENGTH=834;; (*ITAG) Solyc02g030450.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16577479-16606006 transcript_region:SL2.40ch02:16577479..16606006- go_terms:GO:0042802,GO:0003924 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0042802,GO:0003924 NbS00000058g0018.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|221; (*GB) gi|30013659|gb|AAP03872.1| (e_value=2e-130) putative photosystem I subunit III precursor [Nicotiana tabacum];; (*SWP) sp|P46486|PSAF_FLATR (e_value=4e-105) Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1;; (*TAIR) AT1G31330.1 (e_value=2e-99) | Symbols: PSAF | photosystem I subunit F | chr1:11215011-11215939 REVERSE LENGTH=221;; (*ITAG) Solyc02g069450.2.1 (e_value=3e-119) genomic_reference:SL2.40ch02 gene_region:33915687-33919252 transcript_region:SL2.40ch02:33915687..33919252- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit III (AHRD V1 ***- Q9XQB4_PHAAU); contains Interpro domain(s) IPR003666 Photosystem I reaction centre protein PsaF, subunit III "; GO:0009538 NbS00000058g0019.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|3|0|433; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=0.0) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=1e-66) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=1e-47) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc01g106410.1.1 (e_value=8e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00000058g0025.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|0|0.5|2|0|82; (*GB) gi|46389751|dbj|BAD15106.1| (e_value=3e-23) hypothetical protein [Nicotiana tabacum]; NbS00031972g0001.1 protein AED:0.02 eAED:0.02 QI:0|0|0.33|1|1|1|3|0|365; (*GB) gi|356555050|ref|XP_003545852.1| (e_value=4e-155) PREDICTED: syntaxin-124-like [Glycine max];; (*SWP) sp|O64791|SY124_ARATH (e_value=3e-146) Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1;; (*TAIR) AT1G61290.1 (e_value=3e-147) | Symbols: SYP124, ATSYP124 | syntaxin of plants 124 | chr1:22605188-22606216 FORWARD LENGTH=303;; (*ITAG) Solyc12g005580.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:311206-312223 transcript_region:SL2.40ch12:311206..312223- go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00031972g0012.1 protein AED:0.70 eAED:0.85 QI:0|0|0|0.33|0.75|0.88|9|0|233; (*GB) gi|68299225|emb|CAJ13713.1| (e_value=2e-25) hypothetical protein [Capsicum chinense];; (*ITAG) Solyc12g005570.1.1 (e_value=8e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:306887-309886 transcript_region:SL2.40ch12:306887..309886- functional_description:"Unknown Protein (AHRD V1)"; NbS00031972g0010.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|679; (*GB) gi|255553881|ref|XP_002517981.1| (e_value=4e-47) micronuclear linker histone polyprotein, putative [Ricinus communis];; (*ITAG) Solyc12g005560.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:303377-306070 transcript_region:SL2.40ch12:303377..306070+ go_terms:GO:0009168 functional_description:"Unknown Protein (AHRD V1)"; GO:0009168 NbS00022031g0009.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|1|1|4|0|407; (*GB) gi|225453382|ref|XP_002273241.1| (e_value=3e-90) PREDICTED: protein kinase G11A [Vitis vinifera];; (*SWP) sp|A2YBX5|G11A_ORYSI (e_value=3e-78) Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1;; (*TAIR) AT4G26610.1 (e_value=4e-82) | Symbols: D6PKL1, AGC1-2 | D6 protein kinase like 1 | chr4:13425568-13427188 FORWARD LENGTH=506;; (*ITAG) Solyc10g038190.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20507386-20511136 transcript_region:SL2.40ch10:20507386..20511136- go_terms:GO:0005524 functional_description:"Protein kinase 5 (AHRD V1 ***- Q8W4K8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005524 NbS00022031g0010.1 protein AED:0.26 eAED:0.26 QI:194|0.72|0.75|1|0.54|0.58|12|313|569; (*GB) gi|77999788|gb|ABB17074.1| (e_value=0.0) putative sugar transporter [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q0WWW9|XYLL3_ARATH (e_value=1e-141) D-xylose-proton symporter-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g59250 PE=1 SV=2;; (*TAIR) AT5G59250.1 (e_value=7e-143) | Symbols: | Major facilitator superfamily protein | chr5:23903958-23906853 FORWARD LENGTH=558;; (*ITAG) Solyc03g078000.2.1 (e_value=1e-171) genomic_reference:SL2.40ch03 gene_region:42387002-42391566 transcript_region:SL2.40ch03:42387002..42391566+ go_terms:GO:0005353 functional_description:"High-affinity fructose transporter ght6 (AHRD V1 **** GHT6_SCHPO); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005353 NbS00023281g0005.1 protein AED:0.01 eAED:0.01 QI:208|1|1|1|1|1|2|316|234; (*GB) gi|224136692|ref|XP_002322392.1| (e_value=7e-80) predicted protein [Populus trichocarpa];; (*TAIR) AT3G18670.1 (e_value=8e-63) | Symbols: | Ankyrin repeat family protein | chr3:6424135-6426471 REVERSE LENGTH=598;; (*ITAG) Solyc02g068670.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:33196894-33199149 transcript_region:SL2.40ch02:33196894..33199149+ go_terms:GO:0005515 functional_description:"Ankyrin repeat-containing protein At3g12360 (AHRD V1 **-- Y3236_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00023281g0008.1 protein AED:0.26 eAED:0.26 QI:0|1|0.5|1|1|1|2|0|237; (*GB) gi|225423749|ref|XP_002277069.1| (e_value=2e-129) PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FN42|CLPP2_ARATH (e_value=1e-125) ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana GN=CLPP2 PE=1 SV=1;; (*TAIR) AT5G23140.1 (e_value=8e-127) | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease P7 | chr5:7783811-7784826 FORWARD LENGTH=241;; (*ITAG) Solyc04g009310.2.1 (e_value=7e-154) genomic_reference:SL2.40ch04 gene_region:2760682-2765405 transcript_region:SL2.40ch04:2760682..2765405+ go_terms:GO:0005515 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- A5AL82_VITVI); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0005515 NbS00026827g0003.1 protein AED:0.60 eAED:0.70 QI:0|0|0|0.33|1|1|3|0|176 NbS00026827g0017.1 protein AED:0.33 eAED:0.39 QI:0|0.25|0|1|0|0|5|0|256; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=3e-53) Maturase [Medicago truncatula];; (*ITAG) Solyc11g045430.1.1 (e_value=2e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:37811629-37814500 transcript_region:SL2.40ch11:37811629..37814500- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00026827g0021.1 protein AED:0.06 eAED:0.42 QI:0|0|0|1|0|0.33|3|0|179; (*GB) gi|57013971|ref|YP_173443.1| (e_value=2e-63) hypothetical protein NitaMp105 [Nicotiana tabacum];; (*ITAG) Solyc05g045730.1.1 (e_value=7e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56717312-56717506 transcript_region:SL2.40ch05:56717312..56717506- functional_description:"Unknown Protein (AHRD V1)"; NbS00026827g0013.1 protein AED:0.43 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|145; (*ITAG) Solyc11g056390.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43124138-43124320 transcript_region:SL2.40ch11:43124138..43124320+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026827g0020.1 protein AED:0.15 eAED:0.40 QI:0|0|0|1|0|0|3|0|172; (*GB) gi|57013974|ref|YP_173446.1| (e_value=4e-48) hypothetical protein NitaMp108 [Nicotiana tabacum]; NbS00026827g0018.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|73 NbS00039662g0016.1 protein AED:0.15 eAED:0.15 QI:176|1|0.66|1|1|1|3|0|173; (*GB) gi|359496244|ref|XP_002265129.2| (e_value=3e-82) PREDICTED: peptide methionine sulfoxide reductase B3, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C5C8|MSRB2_ARATH (e_value=3e-73) Peptide methionine sulfoxide reductase B2, chloroplastic OS=Arabidopsis thaliana GN=MSRB2 PE=1 SV=1;; (*TAIR) AT4G21860.3 (e_value=2e-74) | Symbols: MSRB2 | methionine sulfoxide reductase B 2 | chr4:11600238-11601507 REVERSE LENGTH=202;; (*ITAG) Solyc01g106400.2.1 (e_value=3e-102) genomic_reference:SL2.40ch01 gene_region:86070052-86071107 transcript_region:SL2.40ch01:86070052..86071107+ go_terms:GO:0055114 functional_description:"Peptide methionine sulfoxide reductase msrB (AHRD V1 ***- B6T2C6_MAIZE); contains Interpro domain(s) IPR002579 Methionine sulphoxide reductase B "; GO:0055114 NbS00039662g0015.1 protein AED:0.18 eAED:0.20 QI:44|0.66|0.75|1|1|0.75|4|0|424; (*GB) gi|224060985|ref|XP_002300308.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64470.2 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF828) | chr5:25776026-25777716 FORWARD LENGTH=407;; (*ITAG) Solyc01g106370.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86060344-86064054 transcript_region:SL2.40ch01:86060344..86064054+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00039662g0003.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|224060983|ref|XP_002300307.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64480.1 (e_value=1e-30) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25778202-25778756 FORWARD LENGTH=184;; (*ITAG) Solyc01g106380.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:86064812-86065480 transcript_region:SL2.40ch01:86064812..86065480+ functional_description:"Genomic DNA chromosome 5 BAC clone T12B11 (AHRD V1 ***- Q9FGE8_ARATH)"; NbS00039662g0017.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|0.5|0.33|3|380|624; (*GB) gi|338173753|gb|AEI83423.1| (e_value=0.0) glutamyl-tRNA reductase [Camellia sinensis];; (*SWP) sp|P93111|HEM11_CUCSA (e_value=0.0) Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1;; (*TAIR) AT1G58290.1 (e_value=0.0) | Symbols: HEMA1 | Glutamyl-tRNA reductase family protein | chr1:21624028-21626051 REVERSE LENGTH=543;; (*ITAG) Solyc01g106390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86065693-86068605 transcript_region:SL2.40ch01:86065693..86068605- go_terms:GO:0008152,GO:0005737,GO:0055114 functional_description:"Glutamyl-tRNA reductase (AHRD V1 ***- A5BZY3_VITVI); contains Interpro domain(s) IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase "; GO:0008152,GO:0005737,GO:0055114 NbS00039662g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|1|1|3|0|245; (*GB) gi|224102623|ref|XP_002334156.1| (e_value=7e-23) cc-nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=2e-16) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*ITAG) Solyc01g106410.1.1 (e_value=9e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00039662g0005.1 protein AED:0.45 eAED:0.45 QI:0|-1|0|1|-1|1|1|0|122; (*ITAG) Solyc01g106410.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86071844-86075400 transcript_region:SL2.40ch01:86071844..86075400- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00021717g0004.1 protein AED:0.08 eAED:0.08 QI:44|1|1|1|1|1|9|308|300; (*GB) gi|317106756|dbj|BAJ53250.1| (e_value=4e-134) JHL25H03.13 [Jatropha curcas];; (*SWP) sp|Q9QYL8|LYPA2_RAT (e_value=7e-28) Acyl-protein thioesterase 2 OS=Rattus norvegicus GN=Lypla2 PE=1 SV=1;; (*TAIR) AT3G15650.1 (e_value=2e-120) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:5306006-5307764 FORWARD LENGTH=255;; (*ITAG) Solyc12g042890.1.1 (e_value=1e-160) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:43782650-43784927 transcript_region:SL2.40ch12:43782650..43784927- go_terms:GO:0004622 functional_description:"Acyl-protein thioesterase 2 (AHRD V1 **-- B6T1C9_MAIZE); contains Interpro domain(s) IPR003140 Phospholipase/carboxylesterase "; GO:0004622 NbS00040468g0003.1 protein AED:0.04 eAED:0.04 QI:0|0.75|0.8|0.8|1|1|5|329|592; (*GB) gi|359489331|ref|XP_002265725.2| (e_value=0.0) PREDICTED: nitrate transporter 1.5-like [Vitis vinifera];; (*SWP) sp|Q9LQL2|PTR14_ARATH (e_value=0.0) Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2;; (*TAIR) AT1G32450.1 (e_value=0.0) | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715337-11719807 REVERSE LENGTH=614;; (*ITAG) Solyc01g080870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:72695723-72699855 transcript_region:SL2.40ch01:72695723..72699855- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00014676g0012.1 protein AED:0.06 eAED:0.06 QI:0|1|0.57|1|1|1|7|0|580; (*GB) gi|224064945|ref|XP_002301611.1| (e_value=9e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69KJ0|RTL3_ORYSJ (e_value=8e-65) Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1;; (*TAIR) AT4G15417.1 (e_value=7e-70) | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:8821759-8822991 FORWARD LENGTH=264;; (*ITAG) Solyc05g024210.1.1 (e_value=1e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:30840562-30842343 transcript_region:SL2.40ch05:30840562..30842343- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 ***- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00014676g0011.1 protein AED:0.26 eAED:0.27 QI:0|0.63|0.58|0.91|0.72|0.83|12|0|659; (*GB) gi|345843162|gb|AEO18237.1| (e_value=0.0) Bti9 [Nicotiana benthamiana];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=1e-73) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=0.0) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc07g049180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56760988-56770880 transcript_region:SL2.40ch07:56760988..56770880- go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00014676g0013.1 protein AED:0.36 eAED:0.37 QI:202|0.33|0.25|1|1|1|4|0|174; (*GB) gi|224064945|ref|XP_002301611.1| (e_value=9e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69KJ0|RTL3_ORYSJ (e_value=5e-29) Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1;; (*TAIR) AT4G15417.1 (e_value=2e-31) | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:8821759-8822991 FORWARD LENGTH=264;; (*ITAG) Solyc07g049160.2.1 (e_value=3e-91) genomic_reference:SL2.40ch07 gene_region:56743226-56748600 transcript_region:SL2.40ch07:56743226..56748600- go_terms:GO:0005515,GO:0004525 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 **** RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515,GO:0004525 NbS00014676g0015.1 protein AED:0.33 eAED:0.37 QI:0|0|0|1|0|0|2|0|139; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-25) hypothetical protein [Nicotiana tabacum]; NbS00028209g0005.1 protein AED:0.18 eAED:0.18 QI:0|0.90|1|1|1|1|12|605|1024; (*GB) gi|6289059|gb|AAF06792.1|AF194022_1 (e_value=0.0) sucrose-6-phosphate synthase A [Nicotiana tabacum];; (*SWP) sp|Q43845|SPSA_SOLTU (e_value=0.0) Probable sucrose-phosphate synthase OS=Solanum tuberosum GN=SPS PE=2 SV=1;; (*TAIR) AT5G20280.1 (e_value=0.0) | Symbols: ATSPS1F, SPS1F | sucrose phosphate synthase 1F | chr5:6844994-6849997 REVERSE LENGTH=1043;; (*ITAG) Solyc07g007790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2438924-2447625 transcript_region:SL2.40ch07:2438924..2447625+ go_terms:GO:0046524 functional_description:"Sucrose phosphate synthase (AHRD V1 **** Q2HYI0_CUCME); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0046524 NbS00023103g0004.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|0|658; (*GB) gi|147845950|emb|CAN82028.1| (e_value=0.0) hypothetical protein VITISV_000613 [Vitis vinifera];; (*SWP) sp|Q9ZU27|PPR76_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1;; (*TAIR) AT1G51965.1 (e_value=0.0) | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:19312078-19314145 REVERSE LENGTH=650;; (*ITAG) Solyc03g121110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63382273-63385549 transcript_region:SL2.40ch03:63382273..63385549- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00013015g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.6|1|0.25|0.4|5|14|339; (*GB) gi|356567743|ref|XP_003552076.1| (e_value=6e-117) PREDICTED: uncharacterized protein LOC100810342 [Glycine max];; (*TAIR) AT2G30900.1 (e_value=6e-105) | Symbols: TBL43 | TRICHOME BIREFRINGENCE-LIKE 43 | chr2:13150481-13152417 FORWARD LENGTH=368;; (*ITAG) Solyc07g055800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61048180-61051087 transcript_region:SL2.40ch07:61048180..61051087+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00026021g0001.1 protein AED:0.14 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|400; (*GB) gi|224088041|ref|XP_002308303.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9T0K5|LRX3_ARATH (e_value=4e-97) Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1;; (*TAIR) AT4G29240.1 (e_value=3e-154) | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:14418826-14420073 FORWARD LENGTH=415;; (*ITAG) Solyc05g026240.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:40181138-40182313 transcript_region:SL2.40ch05:40181138..40182313+ go_terms:GO:0005199 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005199 NbS00026021g0011.1 protein AED:0.14 eAED:0.14 QI:175|1|1|1|1|1|2|490|421; (*GB) gi|225445053|ref|XP_002283391.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100245695 [Vitis vinifera];; (*TAIR) AT4G29310.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF1005) | chr4:14437892-14439609 REVERSE LENGTH=424;; (*ITAG) Solyc12g008600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1996212-1999348 transcript_region:SL2.40ch12:1996212..1999348+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010410 Protein of unknown function DUF1005 "; NbS00026021g0010.1 protein AED:0.20 eAED:0.20 QI:88|1|1|1|1|1|3|193|267; (*GB) gi|225445051|ref|XP_002283385.1| (e_value=9e-116) PREDICTED: acid phosphatase 1-like [Vitis vinifera];; (*SWP) sp|P27061|PPA1_SOLLC (e_value=5e-85) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G29260.1 (e_value=4e-93) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:14422310-14423409 REVERSE LENGTH=255;; (*ITAG) Solyc08g066530.2.1 (e_value=5e-150) genomic_reference:SL2.40ch08 gene_region:52464757-52475814 transcript_region:SL2.40ch08:52464757..52475814- go_terms:GO:0003993 functional_description:"Acid phosphatase-like protein (AHRD V1 **-- Q9M0F5_ARATH); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00032344g0009.1 protein AED:0.22 eAED:0.22 QI:239|1|1|1|1|1|2|290|158; (*GB) gi|6561156|gb|AAF16869.1|AF109693_1 (e_value=4e-46) allergen-like protein BRSn20 [Sambucus nigra];; (*SWP) sp|P33050|PSC13_MAIZE (e_value=9e-27) Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1;; (*TAIR) AT4G08685.1 (e_value=2e-36) | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin family protein | chr4:5550563-5551259 FORWARD LENGTH=159;; (*ITAG) Solyc04g054810.2.1 (e_value=2e-71) genomic_reference:SL2.40ch04 gene_region:52432873-52434340 transcript_region:SL2.40ch04:52432873..52434340+ functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6T2Z8_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; NbS00029254g0005.1 protein AED:0.25 eAED:0.27 QI:0|1|0.85|1|1|1|7|0|274; (*GB) gi|356549461|ref|XP_003543112.1| (e_value=5e-133) PREDICTED: DUF21 domain-containing protein At4g33700-like [Glycine max];; (*SWP) sp|Q9ZQR4|Y2452_ARATH (e_value=1e-125) DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2;; (*TAIR) AT2G14520.1 (e_value=1e-126) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr2:6182362-6184648 REVERSE LENGTH=423;; (*ITAG) Solyc10g048010.1.1 (e_value=9e-142) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38972918-38976757 transcript_region:SL2.40ch10:38972918..38976757+ go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_SHIFL); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00029254g0008.1 protein AED:0.33 eAED:0.33 QI:0|0.6|0.5|1|0.6|0.5|6|0|258; (*GB) gi|224105811|ref|XP_002313939.1| (e_value=1e-143) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=2e-136) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT5G65810.1 (e_value=4e-140) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26337833-26339144 REVERSE LENGTH=258;; (*ITAG) Solyc10g047960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:38709332-38712666 transcript_region:SL2.40ch10:38709332..38712666- functional_description:"Unknown Protein (AHRD V1)"; NbS00033152g0001.1 protein AED:0.36 eAED:0.45 QI:0|0|0|1|1|1|2|0|62; (*SWP) sp|Q9LIP5|C71BW_ARATH (e_value=5e-15) Cytochrome P450 71B35 OS=Arabidopsis thaliana GN=CYP71B35 PE=2 SV=1;; (*TAIR) AT3G26310.1 (e_value=4e-16) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc11g006590.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1217070-1219401 transcript_region:SL2.40ch11:1217070..1219401+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000683g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|0|0|2|0|401; (*GB) gi|225451966|ref|XP_002283242.1| (e_value=3e-126) PREDICTED: transcription factor AS1 [Vitis vinifera];; (*SWP) sp|O80931|AS1_ARATH (e_value=1e-76) Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1;; (*TAIR) AT2G37630.1 (e_value=8e-78) | Symbols: ATPHAN, AS1, ATMYB91, MYB91 | myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367;; (*ITAG) Solyc09g010840.1.1 (e_value=8e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:4148534-4149616 transcript_region:SL2.40ch09:4148534..4149616- go_terms:GO:0003700,GO:0042803 functional_description:"Myb family transcription factor (AHRD V1 **-* D1LXI9_9ROSI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700,GO:0042803 NbS00000683g0008.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0|0|2|0|644; (*GB) gi|325516284|gb|ADZ24720.1| (e_value=1e-167) geranylgeranyl pyrophosphate synthase 3 [Solanum pennellii];; (*SWP) sp|Q42698|GGPPS_CATRO (e_value=5e-136) Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1;; (*TAIR) AT4G36810.1 (e_value=7e-121) | Symbols: GGPS1 | geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371;; (*ITAG) Solyc02g085700.1.1 (e_value=8e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:43100346-43101428 transcript_region:SL2.40ch02:43100346..43101428+ go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- D0FZ25_9ASTE); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00033600g0010.1 protein AED:0.04 eAED:0.04 QI:0|0.25|0.2|1|0.5|0.4|5|390|1218; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=1e-102) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46599025-46605833 transcript_region:SL2.40ch12:46599025..46605833- functional_description:"Erect panical 2 (AHRD V1 *--- B8B8K3_ORYSI)"; NbS00033600g0009.1 protein AED:0.12 eAED:0.13 QI:0|0.85|0.75|1|0.71|0.62|8|250|221; (*GB) gi|297742959|emb|CBI35826.3| (e_value=1e-89) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=1e-81) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049520.1.1 (e_value=3e-110) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46608538-46609796 transcript_region:SL2.40ch12:46608538..46609796- functional_description:"COP1-Interacting ProteinI 7 (CIP7) (Fragment) (AHRD V1 **-- Q7GDB1_ARATH)"; NbS00015512g0005.1 protein AED:0.01 eAED:0.02 QI:140|1|0.66|1|1|1|3|0|437; (*GB) gi|224101077|ref|XP_002312133.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G05840.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr5:1757268-1760458 REVERSE LENGTH=439;; (*ITAG) Solyc05g052860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:62193632-62197050 transcript_region:SL2.40ch05:62193632..62197050+ functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00015512g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|159; (*GB) gi|315932718|gb|ADU55789.1| (e_value=1e-71) HSP18.1A [Citrullus lanatus];; (*SWP) sp|P19037|HS181_ARATH (e_value=4e-65) 18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1;; (*TAIR) AT5G59720.1 (e_value=3e-66) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161;; (*ITAG) Solyc09g015020.1.1 (e_value=3e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7440133-7440597 transcript_region:SL2.40ch09:7440133..7440597+ go_terms:GO:0051082 functional_description:"class I heat shock protein 3 (AHRD V1 ***- B6TDB5_MAIZE); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; GO:0051082 NbS00010909g0010.1 protein AED:0.11 eAED:0.11 QI:0|1|0|1|1|1|3|0|216; (*GB) gi|25140462|gb|AAN71731.1| (e_value=7e-46) WRKY transcription factor IIe-1 [Solanum lycopersicum];; (*SWP) sp|O64747|WRK35_ARATH (e_value=4e-20) Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1;; (*TAIR) AT2G34830.1 (e_value=3e-21) | Symbols: WRKY35, MEE24, AtWRKY35 | WRKY DNA-binding protein 35 | chr2:14693839-14696378 REVERSE LENGTH=427;; (*ITAG) Solyc01g079360.2.1 (e_value=3e-91) genomic_reference:SL2.40ch01 gene_region:70960474-70962139 transcript_region:SL2.40ch01:70960474..70962139- go_terms:GO:0045449 functional_description:"WRKY transcription factor 3 (AHRD V1 ***- C9DHZ2_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010909g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|147 NbS00010909g0004.1 protein AED:0.27 eAED:0.28 QI:0|0.33|0.14|1|1|1|7|0|415; (*GB) gi|297743990|emb|CBI36960.3| (e_value=2e-72) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G56460.1 (e_value=6e-45) | Symbols: | HIT zinc finger ;PAPA-1-like conserved region | chr1:21146765-21149468 FORWARD LENGTH=502;; (*ITAG) Solyc01g079350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70955389-70958207 transcript_region:SL2.40ch01:70955389..70958207+ go_terms:GO:0005515 functional_description:"PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL7_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region "; GO:0005515 NbS00012109g0005.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|0|0.25|4|0|326; (*GB) gi|238769999|dbj|BAH66920.1| (e_value=4e-171) metal transporter [Nicotiana tabacum];; (*SWP) sp|Q6L8G0|ZIP5_ORYSJ (e_value=2e-85) Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1;; (*TAIR) AT2G32270.1 (e_value=5e-86) | Symbols: ZIP3 | zinc transporter 3 precursor | chr2:13704278-13706612 FORWARD LENGTH=339;; (*ITAG) Solyc07g043200.1.1 (e_value=5e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54130351-54132150 transcript_region:SL2.40ch07:54130351..54132150- go_terms:GO:0000006 functional_description:"Zinc transporter protein (AHRD V1 **** D5LMF9_9FABA); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006 NbS00035005g0001.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|296087391|emb|CBI33765.3| (e_value=4e-21) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g044180.1.1 (e_value=5e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:12381498-12381764 transcript_region:SL2.40ch03:12381498..12381764+ functional_description:"ABC transporter family protein (AHRD V1 ***- B9IHA0_POPTR)"; NbS00004567g0006.1 protein AED:0.41 eAED:0.41 QI:0|0.14|0|0.25|0.85|0.75|8|0|300; (*GB) gi|112982629|dbj|BAF03493.1| (e_value=6e-94) Ku70 homolog [Populus nigra];; (*SWP) sp|Q9FQ08|KU70_ARATH (e_value=2e-87) ATP-dependent DNA helicase 2 subunit KU70 OS=Arabidopsis thaliana GN=KU70 PE=1 SV=1;; (*TAIR) AT1G16970.1 (e_value=2e-88) | Symbols: KU70, ATKU70 | KU70 homolog | chr1:5801159-5805724 REVERSE LENGTH=621;; (*ITAG) Solyc09g098230.2.1 (e_value=2e-111) genomic_reference:SL2.40ch09 gene_region:67349841-67364289 transcript_region:SL2.40ch09:67349841..67364289- go_terms:GO:0008022,GO:0003691 functional_description:"ATP-dependent DNA helicase 2 subunit KU70 (AHRD V1 **-* KU70_ARATH); contains Interpro domain(s) IPR006165 DNA helicase, ATP-dependent, Ku70 subunit "; GO:0008022,GO:0003691 NbS00004567g0009.1 protein AED:0.51 eAED:0.60 QI:0|0.33|0.28|0.57|1|1|7|0|515; (*GB) gi|225427546|ref|XP_002266353.1| (e_value=8e-126) PREDICTED: uncharacterized protein LOC100256382 [Vitis vinifera];; (*SWP) sp|Q8QFR4|MD2L2_XENLA (e_value=1e-22) Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus laevis GN=mad2l2 PE=1 SV=1;; (*TAIR) AT1G79120.1 (e_value=5e-104) | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:29767314-29768555 REVERSE LENGTH=413;; (*ITAG) Solyc09g098220.2.1 (e_value=1e-121) genomic_reference:SL2.40ch09 gene_region:67348049-67349611 transcript_region:SL2.40ch09:67348049..67349611+ go_terms:GO:0005515 functional_description:"Mitotic spindle checkpoint component mad2 (AHRD V1 ***- MAD2_SCHPO); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0005515 NbS00030544g0006.1 protein AED:0.14 eAED:0.24 QI:643|0.77|0.8|1|0.22|0.3|10|598|103; (*GB) gi|297744466|emb|CBI37728.3| (e_value=3e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4JN00|CSTR4_ARATH (e_value=3e-54) CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1;; (*TAIR) AT4G35335.1 (e_value=3e-55) | Symbols: | Nucleotide-sugar transporter family protein | chr4:16807286-16810015 FORWARD LENGTH=352;; (*ITAG) Solyc11g008590.1.1 (e_value=9e-67) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2778593-2785148 transcript_region:SL2.40ch11:2778593..2785148+ go_terms:GO:0016021 functional_description:"UDP-galactose transporter-like protein (AHRD V1 *-*- O65494_ARATH); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0016021 NbS00008151g0012.1 protein AED:0.23 eAED:0.23 QI:303|1|1|1|0.8|0.90|11|473|327; (*GB) gi|358248956|ref|NP_001239713.1| (e_value=0.0) uncharacterized protein LOC100786704 [Glycine max];; (*SWP) sp|Q9XI00|SKI32_ARATH (e_value=0.0) F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1;; (*TAIR) AT1G21760.1 (e_value=0.0) | Symbols: ATFBP7, FBP7 | F-box protein 7 | chr1:7649324-7651613 FORWARD LENGTH=328;; (*ITAG) Solyc11g012830.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5628339-5636570 transcript_region:SL2.40ch11:5628339..5636570+ functional_description:"F-box family protein (AHRD V1 ***- D7KKU2_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008151g0013.1 protein AED:0.38 eAED:0.38 QI:75|0.90|0.91|1|0.81|0.83|12|0|419; (*GB) gi|4996602|dbj|BAA78552.1| (e_value=0.0) thylakoid-bound ascorbate peroxidase [Nicotiana tabacum];; (*SWP) sp|Q42593|APXT_ARATH (e_value=0.0) L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2;; (*TAIR) AT1G77490.1 (e_value=0.0) | Symbols: TAPX | thylakoidal ascorbate peroxidase | chr1:29117688-29120046 FORWARD LENGTH=426;; (*ITAG) Solyc11g018550.2.1 (e_value=0.0) genomic_reference:SL2.40ch11 gene_region:8668547-8674999 transcript_region:SL2.40ch11:8668547..8674999+ go_terms:GO:0016688,GO:0004130,GO:0005247 functional_description:"Thylakoid-bound ascorbate peroxidase 6"; GO:0016688,GO:0004130,GO:0005247 NbS00014847g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|0.66|3|0|178; (*GB) gi|356576263|ref|XP_003556252.1| (e_value=2e-73) PREDICTED: uncharacterized protein LOC100782087 [Glycine max];; (*TAIR) AT1G04560.1 (e_value=9e-76) | Symbols: | AWPM-19-like family protein | chr1:1245070-1245888 FORWARD LENGTH=186;; (*ITAG) Solyc05g053160.2.1 (e_value=3e-86) genomic_reference:SL2.40ch05 gene_region:62438344-62440293 transcript_region:SL2.40ch05:62438344..62440293- functional_description:"Plasma membrane associated protein (AHRD V1 ***- B6SJ93_MAIZE); contains Interpro domain(s) IPR008390 AWPM-19-like "; NbS00029251g0007.1 protein AED:0.19 eAED:0.21 QI:478|1|0.88|1|0.5|0.33|9|0|651; (*GB) gi|359485518|ref|XP_002271198.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251719 [Vitis vinifera];; (*TAIR) AT2G32970.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. | chr2:13991744-13995065 REVERSE LENGTH=690;; (*ITAG) Solyc07g049350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56952763-56957872 transcript_region:SL2.40ch07:56952763..56957872+ functional_description:"(Rice Genome Annotation Project) expressed protein (AHRD V1 ***- B7FAJ2_ORYSJ)"; NbS00029251g0008.1 protein AED:0.18 eAED:0.18 QI:145|1|1|1|1|1|3|885|96; (*GB) gi|213868279|gb|ACJ54186.1| (e_value=3e-65) SUMO [Nicotiana benthamiana];; (*SWP) sp|Q9FLP6|SUMO2_ARATH (e_value=4e-58) Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=3e-59) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc12g006010.1.1 (e_value=1e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:619162-621481 transcript_region:SL2.40ch12:619162..621481+ go_terms:GO:0005737 functional_description:"Small ubiquitin-related modifier (AHRD V1 ***- A6BMG7_COPCI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0005737 NbS00057877g0003.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.5|0.83|0.8|0.66|6|0|170; (*GB) gi|225426512|ref|XP_002271762.1| (e_value=3e-78) PREDICTED: soluble inorganic pyrophosphatase [Vitis vinifera];; (*SWP) sp|Q43187|IPYR_SOLTU (e_value=1e-77) Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1;; (*TAIR) AT1G01050.1 (e_value=5e-78) | Symbols: AtPPa1, PPa1 | pyrophosphorylase 1 | chr1:31382-32670 REVERSE LENGTH=212;; (*ITAG) Solyc09g010380.2.1 (e_value=5e-79) genomic_reference:SL2.40ch09 gene_region:3768116-3770648 transcript_region:SL2.40ch09:3768116..3770648+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q9LFF9_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00004071g0006.1 protein AED:0.18 eAED:0.18 QI:124|0.9|0.72|1|0.7|0.72|11|0|543; (*GB) gi|255544520|ref|XP_002513321.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G03070.1 (e_value=2e-145) | Symbols: MED8 | mediator subunit 8 | chr2:905978-908792 FORWARD LENGTH=524;; (*ITAG) Solyc03g123960.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64704384-64715097 transcript_region:SL2.40ch03:64704384..64715097+ functional_description:"Unknown Protein (AHRD V1)"; NbS00052335g0005.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.5|1|0.8|0.83|6|0|230; (*GB) gi|225454448|ref|XP_002276620.1| (e_value=9e-84) PREDICTED: solute carrier family 25 member 39-like [Vitis vinifera];; (*SWP) sp|Q9D8K8|S2539_MOUSE (e_value=4e-15) Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1;; (*TAIR) AT2G46320.1 (e_value=2e-71) | Symbols: | Mitochondrial substrate carrier family protein | chr2:19015998-19018020 FORWARD LENGTH=361;; (*ITAG) Solyc01g095510.2.1 (e_value=5e-135) genomic_reference:SL2.40ch01 gene_region:78512086-78519591 transcript_region:SL2.40ch01:78512086..78519591+ go_terms:GO:0005384,GO:0016530 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1E2Y0_9CHLO); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0005384,GO:0016530 NbS00041436g0001.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|163; (*GB) gi|317454954|gb|ADV19273.1| (e_value=2e-13) predicted protein-like protein [Helleborus orientalis];; (*ITAG) Solyc01g080950.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:72795525-72796979 transcript_region:SL2.40ch01:72795525..72796979+ go_terms:GO:0009790 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005513 Late embryogenesis abundant (LEA) group 1 "; GO:0009790 NbS00041436g0002.1 protein AED:0.29 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|643; (*GB) gi|356537892|ref|XP_003537440.1| (e_value=7e-37) PREDICTED: agamous-like MADS-box protein AGL80-like [Glycine max];; (*SWP) sp|Q9FJK3|AGL80_ARATH (e_value=1e-30) Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1;; (*TAIR) AT5G48670.1 (e_value=8e-32) | Symbols: FEM111, AGL80 | AGAMOUS-like 80 | chr5:19738825-19739790 REVERSE LENGTH=321;; (*ITAG) Solyc01g102260.2.1 (e_value=6e-39) genomic_reference:SL2.40ch01 gene_region:82852031-82852877 transcript_region:SL2.40ch01:82852031..82852877- go_terms:GO:0005515,GO:0003677 functional_description:"Pheres1 (Fragment) (AHRD V1 ***- B2BFM9_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0003677 NbS00003986g0015.1 protein AED:0.00 eAED:0.00 QI:0|1|1|1|0.5|0.57|7|0|239; (*GB) gi|356570066|ref|XP_003553212.1| (e_value=8e-104) PREDICTED: phospholipid-transporting ATPase 3-like [Glycine max];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=3e-98) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=2e-99) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc05g006640.2.1 (e_value=4e-133) genomic_reference:SL2.40ch05 gene_region:1293312-1308931 transcript_region:SL2.40ch05:1293312..1308931- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00003986g0016.1 protein AED:0.18 eAED:0.18 QI:271|0.94|1|1|1|0.94|19|367|939; (*GB) gi|356570066|ref|XP_003553212.1| (e_value=0.0) PREDICTED: phospholipid-transporting ATPase 3-like [Glycine max];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=0.0) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=0.0) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc05g006640.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1293312-1308931 transcript_region:SL2.40ch05:1293312..1308931- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00003986g0018.1 protein AED:0.15 eAED:0.15 QI:0|0.25|0.2|0.6|0.5|0.6|5|0|385; (*GB) gi|297737987|emb|CBI27188.3| (e_value=2e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=7e-13) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT5G35810.1 (e_value=3e-96) | Symbols: | Ankyrin repeat family protein | chr5:13993428-13994549 REVERSE LENGTH=347;; (*ITAG) Solyc02g068600.2.1 (e_value=4e-145) genomic_reference:SL2.40ch02 gene_region:33142873-33144717 transcript_region:SL2.40ch02:33142873..33144717- go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 **-- Q9FMD0_ARATH)"; GO:0005515 NbS00003986g0008.1 protein AED:0.11 eAED:0.20 QI:465|1|0.83|1|0.4|0.16|6|0|94; (*GB) gi|359473394|ref|XP_003631295.1| (e_value=3e-14) PREDICTED: uncharacterized protein LOC100855041 [Vitis vinifera];; (*TAIR) AT1G10417.1 (e_value=6e-14) | Symbols: | Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. | chr1:3424616-3427457 REVERSE LENGTH=431; NbS00022917g0003.1 protein AED:0.04 eAED:0.04 QI:269|1|1|1|0.8|0.66|6|296|332; (*GB) gi|356508829|ref|XP_003523156.1| (e_value=4e-65) PREDICTED: uncharacterized protein LOC100787932 [Glycine max];; (*TAIR) AT5G63530.2 (e_value=3e-60) | Symbols: ATFP3, FP3 | farnesylated protein 3 | chr5:25433423-25435614 FORWARD LENGTH=340;; (*ITAG) Solyc03g097380.2.1 (e_value=3e-76) genomic_reference:SL2.40ch03 gene_region:53164694-53166669 transcript_region:SL2.40ch03:53164694..53166669+ go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q7XG81_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00055094g0009.1 protein AED:0.20 eAED:0.20 QI:57|0.75|0.6|1|0.5|0.8|5|373|386; (*GB) gi|255579574|ref|XP_002530628.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5Z8P0|P2C60_ORYSJ (e_value=0.0) Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc02g083420.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41410375-41413887 transcript_region:SL2.40ch02:41410375..41413887- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B6SYG9_MAIZE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00055094g0011.1 protein AED:0.38 eAED:0.45 QI:168|0.28|0.5|1|0.42|0.62|8|0|374; (*GB) gi|359496155|ref|XP_003635165.1| (e_value=1e-72) PREDICTED: receptor-like protein kinase THESEUS 1-like [Vitis vinifera];; (*SWP) sp|Q9FID8|Y5900_ARATH (e_value=8e-18) Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1;; (*TAIR) AT5G39000.1 (e_value=6e-19) | Symbols: | Malectin/receptor-like protein kinase family protein | chr5:15611860-15614481 FORWARD LENGTH=873;; (*ITAG) Solyc02g083410.2.1 (e_value=1e-132) genomic_reference:SL2.40ch02 gene_region:41405399-41409718 transcript_region:SL2.40ch02:41405399..41409718+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM40_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003050g0009.1 protein AED:0.17 eAED:0.17 QI:173|0.85|0.87|1|0.42|0.62|8|283|248; (*GB) gi|225437593|ref|XP_002271003.1| (e_value=5e-101) PREDICTED: uncharacterized protein LOC100253777 [Vitis vinifera];; (*TAIR) AT4G01995.1 (e_value=7e-77) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:873075-874619 FORWARD LENGTH=258;; (*ITAG) Solyc06g084610.2.1 (e_value=3e-134) genomic_reference:SL2.40ch06 gene_region:45961745-45964444 transcript_region:SL2.40ch06:45961745..45964444- functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)"; NbS00003050g0008.1 protein AED:0.28 eAED:0.28 QI:144|0.95|0.95|1|0.85|0.90|22|494|585; (*GB) gi|225437503|ref|XP_002269885.1| (e_value=0.0) PREDICTED: CTP synthase [Vitis vinifera];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=0.0) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT4G02120.1 (e_value=0.0) | Symbols: | CTP synthase family protein | chr4:940873-944097 FORWARD LENGTH=556;; (*ITAG) Solyc01g079650.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00003050g0001.1 protein AED:0.14 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|192 NbS00030495g0004.1 protein AED:0.17 eAED:0.22 QI:78|0.83|0.71|1|0.66|0.57|7|409|302; (*GB) gi|255549046|ref|XP_002515579.1| (e_value=3e-138) 3-hydroxybutyryl-CoA dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9T0K7|HIBC6_ARATH (e_value=5e-133) 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=At4g13360 PE=1 SV=2;; (*TAIR) AT4G13360.1 (e_value=4e-134) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:7775133-7777701 FORWARD LENGTH=421;; (*ITAG) Solyc05g018410.1.1 (e_value=1e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:20741151-20746674 transcript_region:SL2.40ch05:20741151..20746674- go_terms:GO:0003860 functional_description:"Enoyl-CoA hydratase (AHRD V1 **** A3WX21_9BRAD)"; GO:0003860 NbS00018101g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0.5|0|3|0|739; (*GB) gi|224134603|ref|XP_002321863.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O64639|Y2559_ARATH (e_value=6e-166) Receptor-like serine/threonine-protein kinase At2g45590 OS=Arabidopsis thaliana GN=At2g45590 PE=2 SV=1;; (*TAIR) AT2G45590.1 (e_value=4e-167) | Symbols: | Protein kinase superfamily protein | chr2:18786725-18788776 FORWARD LENGTH=683;; (*ITAG) Solyc03g006920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1487731-1490949 transcript_region:SL2.40ch03:1487731..1490949- go_terms:GO:0006468 functional_description:"Receptor kinase-like protein (AHRD V1 ***- Q9STJ8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008318g0008.1 protein AED:0.05 eAED:0.05 QI:56|1|1|1|0.8|0.66|6|381|554; (*GB) gi|1685087|gb|AAC49536.1| (e_value=0.0) diphenol oxidase [Nicotiana tabacum];; (*SWP) sp|O80434|LAC4_ARATH (e_value=0.0) Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2;; (*TAIR) AT2G38080.1 (e_value=0.0) | Symbols: IRX12, LAC4, ATLMCO4, LMCO4 | Laccase/Diphenol oxidase family protein | chr2:15934540-15937352 FORWARD LENGTH=558;; (*ITAG) Solyc10g085090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63726967-63730319 transcript_region:SL2.40ch10:63726967..63730319+ go_terms:GO:0008471,GO:0004322 functional_description:"Laccase 1a (AHRD V1 **** B9IG56_POPTR); contains Interpro domain(s) IPR017761 Laccase "; GO:0008471,GO:0004322 NbS00008318g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.7|0.63|0.72|1|1|11|315|396; (*GB) gi|359481678|ref|XP_002278868.2| (e_value=0.0) PREDICTED: GDP-mannose-dependent alpha-mannosyltransferase [Vitis vinifera];; (*SWP) sp|O06423|MGTA_MYCTU (e_value=9e-43) GDP-mannose-dependent alpha-mannosyltransferase OS=Mycobacterium tuberculosis GN=mgtA PE=1 SV=1;; (*TAIR) AT5G01220.1 (e_value=0.0) | Symbols: SQD2 | sulfoquinovosyldiacylglycerol 2 | chr5:86907-89885 REVERSE LENGTH=510;; (*ITAG) Solyc10g085100.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63731174-63736805 transcript_region:SL2.40ch10:63731174..63736805- go_terms:GO:0009058 functional_description:"Glycosyl transferase group 1 family protein (AHRD V1 **-- B6T479_MAIZE); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0009058 NbS00024378g0007.1 protein AED:0.11 eAED:0.12 QI:0|0.33|0.28|1|0.5|0.71|7|0|598; (*GB) gi|356495939|ref|XP_003516828.1| (e_value=0.0) PREDICTED: probable nitrite transporter At1g68570-like [Glycine max];; (*SWP) sp|Q9SX20|PTR18_ARATH (e_value=0.0) Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1;; (*TAIR) AT1G68570.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:25746811-25750110 FORWARD LENGTH=596;; (*ITAG) Solyc05g009500.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:3668010-3672604 transcript_region:SL2.40ch05:3668010..3672604- go_terms:GO:0042937,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042937,GO:0042936 NbS00024378g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|225423955|ref|XP_002282387.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100268142 [Vitis vinifera];; (*TAIR) AT1G13360.1 (e_value=5e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc05g009520.1.1 (e_value=2e-73) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:3719747-3720274 transcript_region:SL2.40ch05:3719747..3720274- functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 ***- Q9LUA5_ARATH)"; NbC25854073g0001.1 protein AED:0.49 eAED:0.62 QI:35|0|0|1|1|0.5|2|0|81; (*GB) gi|255546123|ref|XP_002514121.1| (e_value=6e-39) valacyclovir hydrolase, putative [Ricinus communis];; (*TAIR) AT1G29840.1 (e_value=8e-36) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263;; (*ITAG) Solyc07g039530.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:44979831-44983878 transcript_region:SL2.40ch07:44979831..44983878- go_terms:GO:0003824 functional_description:"Esterase/lipase/thioesterase (Fragment) (AHRD V1 *-*- B3VW33_POPTN)"; GO:0003824 NbS00015220g0010.1 protein AED:0.29 eAED:0.29 QI:0|0.85|0.87|1|0.71|0.87|8|386|403; (*GB) gi|225461166|ref|XP_002282916.1| (e_value=0.0) PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 [Vitis vinifera];; (*SWP) sp|Q9LFV3|Y5157_ARATH (e_value=1e-100) Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1;; (*TAIR) AT5G54590.2 (e_value=0.0) | Symbols: CRLK1 | Protein kinase superfamily protein | chr5:22180480-22182698 FORWARD LENGTH=440;; (*ITAG) Solyc07g063950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63510696-63514925 transcript_region:SL2.40ch07:63510696..63514925+ go_terms:GO:0004672,GO:0005515 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM68_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672,GO:0005515 NbS00015220g0007.1 protein AED:0.31 eAED:0.31 QI:130|0.5|0.4|0.8|1|1|5|0|195; (*GB) gi|400989|sp|Q02764.1|RK24_TOBAC (e_value=1e-107) RecName: Full=50S ribosomal protein L24, chloroplastic; AltName: Full=CL24; Flags: Precursor;; (*SWP) sp|Q02764|RK24_TOBAC (e_value=3e-109) 50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum GN=RPL24 PE=1 SV=1;; (*TAIR) AT5G54600.1 (e_value=3e-77) | Symbols: | Translation protein SH3-like family protein | chr5:22183046-22184403 FORWARD LENGTH=198;; (*ITAG) Solyc07g063960.2.1 (e_value=2e-110) genomic_reference:SL2.40ch07 gene_region:63515688-63518536 transcript_region:SL2.40ch07:63515688..63518536+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L24 (AHRD V1 ***- B4FTJ3_MAIZE); contains Interpro domain(s) IPR003256 Ribosomal protein L24 "; GO:0005840 NbS00006597g0020.1 protein AED:0.13 eAED:0.13 QI:52|0.77|0.7|1|0.22|0.5|10|3528|368; (*GB) gi|359489837|ref|XP_003633983.1| (e_value=1e-122) PREDICTED: uncharacterized protein LOC100255153 [Vitis vinifera];; (*SWP) sp|Q68EX9|CHID1_XENLA (e_value=2e-47) Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1;; (*TAIR) AT4G01040.1 (e_value=2e-120) | Symbols: | Glycosyl hydrolase superfamily protein | chr4:453383-455407 FORWARD LENGTH=430;; (*ITAG) Solyc05g050320.2.1 (e_value=8e-147) genomic_reference:SL2.40ch05 gene_region:59590670-59596104 transcript_region:SL2.40ch05:59590670..59596104+ go_terms:GO:0006032,GO:0005975 functional_description:"Chitinase domain-containing protein 1 (AHRD V1 **-- B0XIZ5_CULQU); contains Interpro domain(s) IPR011583 Chitinase II "; GO:0006032,GO:0005975 NbS00006597g0015.1 protein AED:0.19 eAED:0.19 QI:23|1|0.88|1|0.75|0.88|9|312|527; (*GB) gi|58618121|gb|AAW80627.1| (e_value=0.0) autophagy protein beclin1 [Nicotiana benthamiana];; (*SWP) sp|Q9M367|BECN1_ARATH (e_value=0.0) Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2;; (*TAIR) AT3G61710.1 (e_value=0.0) | Symbols: ATATG6, ATG6, BECLIN1, AtBECLIN1 | AUTOPHAGY 6 | chr3:22839477-22842253 REVERSE LENGTH=517;; (*ITAG) Solyc05g050390.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:59651299-59658483 transcript_region:SL2.40ch05:59651299..59658483- go_terms:GO:0005515 functional_description:"Beclin 1 protein (AHRD V1 ***- Q4A184_SOLTU); contains Interpro domain(s) IPR007243 Autophagy-related protein 6 "; GO:0005515 NbS00006597g0021.1 protein AED:0.24 eAED:0.25 QI:0|0.37|0.44|0.88|0.62|0.66|9|386|737; (*GB) gi|6969229|gb|AAF33669.1|AF079871_1 (e_value=0.0) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=0.0) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=0.0) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc05g050350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:59608116-59612050 transcript_region:SL2.40ch05:59608116..59612050- go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00004794g0014.1 protein AED:0.05 eAED:0.05 QI:34|1|0.5|1|1|1|2|0|64; (*GB) gi|358348445|ref|XP_003638257.1| (e_value=3e-33) hypothetical protein MTR_123s0012, partial [Medicago truncatula];; (*SWP) sp|Q6P5D3|DHX57_MOUSE (e_value=1e-17) Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2;; (*TAIR) AT5G04895.1 (e_value=2e-34) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00004794g0015.1 protein AED:0.39 eAED:0.39 QI:0|1|0.25|1|0.66|0.5|4|0|194; (*GB) gi|255546785|ref|XP_002514451.1| (e_value=3e-111) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q8VHK9|DHX36_MOUSE (e_value=3e-25) Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1;; (*TAIR) AT5G04895.1 (e_value=4e-101) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=2e-119) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00014906g0005.1 protein AED:0.13 eAED:0.13 QI:334|0.83|0.84|0.92|0.75|0.84|13|470|456; (*GB) gi|157042747|gb|ABV02025.1| (e_value=0.0) HMG-CoA synthase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P54873|HMCS_ARATH (e_value=0.0) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=0.0) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc08g080170.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:60656531-60661072 transcript_region:SL2.40ch08:60656531..60661072- go_terms:GO:0004421 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 **** A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic "; GO:0004421 NbS00029418g0004.1 protein AED:0.37 eAED:0.37 QI:0|0.33|0.25|1|0.33|0.25|4|269|96; (*GB) gi|359484301|ref|XP_002281247.2| (e_value=1e-33) PREDICTED: eukaryotic initiation factor 4A-15-like [Vitis vinifera];; (*SWP) sp|Q8L4M1|DWA1_ARATH (e_value=4e-22) WD repeat-containing protein DWA1 OS=Arabidopsis thaliana GN=DWA1 PE=1 SV=1;; (*TAIR) AT2G19430.1 (e_value=3e-23) | Symbols: DWA1, THO6, AtTHO6 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 | chr2:8415217-8417740 FORWARD LENGTH=367;; (*ITAG) Solyc07g040780.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:47037292-47038431 transcript_region:SL2.40ch07:47037292..47038431- functional_description:"Transducin family protein (AHRD V1 ***- D7L7I6_ARALY)"; NbS00014042g0011.1 protein AED:0.24 eAED:0.24 QI:0|0.25|0|0.6|0|0.4|5|0|168; (*GB) gi|351726704|ref|NP_001235088.1| (e_value=1e-67) uncharacterized protein LOC100305929 [Glycine max];; (*SWP) sp|Q42342|CYB51_ARATH (e_value=7e-63) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT5G53560.1 (e_value=6e-64) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc03g082600.2.1 (e_value=7e-72) genomic_reference:SL2.40ch03 gene_region:46071440-46075109 transcript_region:SL2.40ch03:46071440..46075109- go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** A5Z1Y7_MALDO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00014042g0010.1 protein AED:0.28 eAED:0.28 QI:0|0.4|0.16|1|0.6|0.5|6|0|559; (*GB) gi|225455270|ref|XP_002273781.1| (e_value=0.0) PREDICTED: small G protein signaling modulator 2-like isoform 3 [Vitis vinifera];; (*SWP) sp|P09379|GYP7_YARLI (e_value=3e-20) GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2;; (*TAIR) AT3G49350.1 (e_value=2e-177) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539;; (*ITAG) Solyc03g082590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46063003-46070268 transcript_region:SL2.40ch03:46063003..46070268+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00001443g0002.1 protein AED:0.23 eAED:0.24 QI:153|0|0.5|1|0|0.5|2|0|102; (*GB) gi|147792209|emb|CAN72978.1| (e_value=3e-56) hypothetical protein VITISV_009029 [Vitis vinifera];; (*SWP) sp|P26861|RM06_MARPO (e_value=6e-46) 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha GN=RPL6 PE=3 SV=2;; (*TAIR) AT2G18400.1 (e_value=3e-53) | Symbols: | ribosomal protein L6 family protein | chr2:7989665-7989973 REVERSE LENGTH=102;; (*ITAG) Solyc02g085280.1.1 (e_value=2e-59) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:42805687-42805995 transcript_region:SL2.40ch02:42805687..42805995- go_terms:GO:0005840 functional_description:"50S ribosomal protein L6 (AHRD V1 ***- A6NXE5_9BACE); contains Interpro domain(s) IPR019906 Ribosomal protein L6, subgroup "; GO:0005840 NbS00001443g0011.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0.5|0|3|0|199; (*ITAG) Solyc03g034030.2.1 (e_value=3e-32) genomic_reference:SL2.40ch03 gene_region:10024161-10025931 transcript_region:SL2.40ch03:10024161..10025931+ go_terms:GO:0005515 functional_description:"Ce-LEA (AHRD V1 ***- O16527_CAEEL)"; GO:0005515 NbS00001443g0013.1 protein AED:0.25 eAED:0.25 QI:0|0.5|0.4|1|1|1|5|612|164; (*GB) gi|224133840|ref|XP_002327693.1| (e_value=6e-78) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C9G6|U195A_ARATH (e_value=1e-47) MIP18 family protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2;; (*TAIR) AT3G50845.1 (e_value=2e-68) | Symbols: | Protein of unknown function (DUF59) | chr3:18900107-18901209 REVERSE LENGTH=154;; (*ITAG) Solyc06g083060.2.1 (e_value=3e-44) genomic_reference:SL2.40ch06 gene_region:44900180-44904605 transcript_region:SL2.40ch06:44900180..44904605- go_terms:GO:0005515,GO:0010209 functional_description:"FAM96B (AHRD V1 **-- B0WXK4_CULQU); contains Interpro domain(s) IPR002744 Protein of unknown function DUF59 "; GO:0005515,GO:0010209 NbS00033794g0007.1 protein AED:0.06 eAED:0.09 QI:64|0.66|0.42|0.85|0.83|0.57|7|0|878; (*GB) gi|296081931|emb|CBI20936.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25660.1 (e_value=0.0) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067870.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:54128245-54135104 transcript_region:SL2.40ch08:54128245..54135104- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q016Y8_OSTTA)"; NbS00033794g0004.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0.5|0.66|3|0|222; (*GB) gi|363814416|ref|NP_001242845.1| (e_value=5e-68) uncharacterized protein LOC100814835 [Glycine max];; (*TAIR) AT2G40960.1 (e_value=1e-55) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr2:17095637-17097368 FORWARD LENGTH=351;; (*ITAG) Solyc10g078300.1.1 (e_value=4e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00004871g0010.1 protein AED:0.10 eAED:0.11 QI:84|1|0.66|1|1|1|3|0|233; (*GB) gi|224085079|ref|XP_002307481.1| (e_value=7e-79) predicted protein [Populus trichocarpa];; (*TAIR) AT4G14620.1 (e_value=1e-40) | Symbols: | Protein of unknown function (DUF506) | chr4:8389246-8390448 REVERSE LENGTH=341;; (*ITAG) Solyc06g054640.1.1 (e_value=7e-128) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33883081-33884400 transcript_region:SL2.40ch06:33883081..33884400+ go_terms:GO:0005515 functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6TMA8_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; GO:0005515 NbS00034760g0005.1 protein AED:0.21 eAED:0.24 QI:63|1|0.5|1|1|0.75|4|0|690; (*GB) gi|255539302|ref|XP_002510716.1| (e_value=0.0) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=0.0) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.4 (e_value=0.0) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc04g082700.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63881553-63887198 transcript_region:SL2.40ch04:63881553..63887198- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 *-*- GTR12_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00060473g0003.1 protein AED:0.20 eAED:0.21 QI:0|1|0.5|1|1|1|2|0|270; (*GB) gi|225438922|ref|XP_002284043.1| (e_value=1e-171) PREDICTED: sigma factor sigB regulation protein rsbQ [Vitis vinifera];; (*SWP) sp|O07015|RSBQ_BACSU (e_value=7e-60) Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis (strain 168) GN=rsbQ PE=1 SV=1;; (*TAIR) AT4G37470.1 (e_value=1e-166) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:17617045-17618363 REVERSE LENGTH=270;; (*ITAG) Solyc02g092770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48303721-48305719 transcript_region:SL2.40ch02:48303721..48305719+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein expressed (AHRD V1 **-* Q10J20_ORYSJ); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00044652g0004.1 protein AED:0.08 eAED:0.09 QI:0|0.8|0.33|1|0.4|0.33|6|0|394; (*GB) gi|225442323|ref|XP_002280107.1| (e_value=0.0) PREDICTED: inactive protein kinase SELMODRAFT_444075 isoform 2 [Vitis vinifera];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=3e-107) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT3G13690.1 (e_value=0.0) | Symbols: | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain | chr3:4486920-4490011 FORWARD LENGTH=753;; (*ITAG) Solyc12g044840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:45638838-45643012 transcript_region:SL2.40ch12:45638838..45643012+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00019521g0021.1 protein AED:0.05 eAED:0.05 QI:0|0.16|0|0.85|0.16|0.14|7|0|992; (*GB) gi|255581223|ref|XP_002531424.1| (e_value=0.0) receptor-kinase, putative [Ricinus communis];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2600952-2604337 transcript_region:SL2.40ch04:2600952..2604337- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00019521g0018.1 protein AED:0.27 eAED:0.32 QI:3|1|0|1|0|0|2|0|256; (*GB) gi|359494914|ref|XP_002273326.2| (e_value=4e-112) PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B [Vitis vinifera];; (*SWP) sp|Q93W54|ICMTB_ARATH (e_value=2e-92) Protein-S-isoprenylcysteine O-methyltransferase B OS=Arabidopsis thaliana GN=ICMTB PE=1 SV=1;; (*TAIR) AT5G08335.1 (e_value=2e-93) | Symbols: ATSTE14B, ATICMTB, ICMTB | Isoprenylcysteine carboxyl methyltransferase (ICMT) family | chr5:2683012-2683605 FORWARD LENGTH=197;; (*ITAG) Solyc04g009010.1.1 (e_value=7e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2582427-2583020 transcript_region:SL2.40ch04:2582427..2583020- go_terms:GO:0004671 functional_description:"Isoprenylcysteine carboxyl methyltransferase (AHRD V1 **** A8BRM6_GIALA); contains Interpro domain(s) IPR007269 Isoprenylcysteine carboxyl methyltransferase "; GO:0004671 NbS00019521g0023.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.2|1|1|1|5|0|330; (*GB) gi|356561317|ref|XP_003548929.1| (e_value=9e-130) PREDICTED: LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [Glycine max];; (*SWP) sp|P09043|G3PA_TOBAC (e_value=6e-117) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1;; (*TAIR) AT1G12900.1 (e_value=5e-95) | Symbols: GAPA-2 | glyceraldehyde 3-phosphate dehydrogenase A subunit 2 | chr1:4392634-4394283 REVERSE LENGTH=399;; (*ITAG) Solyc04g009030.2.1 (e_value=7e-109) genomic_reference:SL2.40ch04 gene_region:2597412-2600773 transcript_region:SL2.40ch04:2597412..2600773+ go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase (AHRD V1 **** D7UNZ5_BRARC); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00019521g0020.1 protein AED:0.19 eAED:0.20 QI:0|0.85|0.62|1|0.85|0.87|8|0|685; (*GB) gi|225431952|ref|XP_002272572.1| (e_value=0.0) PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9FNS4|MBB1_CHLRE (e_value=2e-77) PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii GN=MBB1 PE=2 SV=1;; (*TAIR) AT3G17040.2 (e_value=0.0) | Symbols: HCF107 | high chlorophyll fluorescent 107 | chr3:5809378-5812605 REVERSE LENGTH=618;; (*ITAG) Solyc04g009020.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2590565-2594701 transcript_region:SL2.40ch04:2590565..2594701+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-splicing factor clf1 (AHRD V1 **-- B2VSG1_PYRTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00019521g0016.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.66|1|1|3|0|365; (*GB) gi|11994207|dbj|BAB01310.1| (e_value=2e-67) unnamed protein product [Arabidopsis thaliana];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=3e-69) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT3G19950.1 (e_value=2e-70) | Symbols: | RING/U-box superfamily protein | chr3:6942853-6943839 FORWARD LENGTH=328;; (*ITAG) Solyc04g009170.1.1 (e_value=9e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2671422-2672351 transcript_region:SL2.40ch04:2671422..2672351+ go_terms:GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *-*- RNF44_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019521g0022.1 protein AED:0.10 eAED:0.26 QI:0|0|0|1|0|0.5|2|0|92; (*GB) gi|114804271|ref|YP_762267.1| (e_value=3e-34) ATP synthase CF1 epsilon subunit [Morus indica];; (*SWP) sp|Q09X11|ATPE_MORIN (e_value=9e-36) ATP synthase epsilon chain, chloroplastic OS=Morus indica GN=atpE PE=3 SV=1;; (*ITAG) ATCG00470.1 (e_value=2e-33) | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663 REVERSE LENGTH=132;; (*ITAG) Solyc01g007320.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00019521g0015.1 protein AED:0.33 eAED:0.33 QI:0|0|0|0.5|1|1|2|0|260; (*GB) gi|147774323|emb|CAN61413.1| (e_value=6e-114) hypothetical protein VITISV_029565 [Vitis vinifera];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=7e-101) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=5e-102) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295;; (*ITAG) Solyc03g025560.2.1 (e_value=4e-75) genomic_reference:SL2.40ch03 gene_region:7340332-7342535 transcript_region:SL2.40ch03:7340332..7342535+ go_terms:GO:0045547 functional_description:"Undecaprenyl pyrophosphate synthase (AHRD V1 **** UPPS_PYRFU); contains Interpro domain(s) IPR001441 Di-trans-poly-cis-decaprenylcistransferase-like "; GO:0045547 NbS00039567g0002.1 protein AED:0.14 eAED:0.21 QI:18|-1|0|1|-1|1|1|0|59; (*GB) gi|22857912|gb|AAL91666.1| (e_value=2e-33) pollen specific actin-depolymerizing factor 1 [Nicotiana tabacum];; (*SWP) sp|Q8LFH6|ADF12_ARATH (e_value=7e-31) Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2;; (*TAIR) AT5G52360.1 (e_value=5e-32) | Symbols: ADF10 | actin depolymerizing factor 10 | chr5:21258157-21259229 REVERSE LENGTH=137;; (*ITAG) Solyc03g025750.2.1 (e_value=4e-34) genomic_reference:SL2.40ch03 gene_region:7529408-7530699 transcript_region:SL2.40ch03:7529408..7530699+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00021694g0101.1 protein AED:0.21 eAED:0.22 QI:0|0.33|0.5|1|1|1|4|238|526 NbS00037701g0001.1 protein AED:0.09 eAED:0.09 QI:268|0.75|0.4|1|0.75|0.6|5|0|965; (*GB) gi|147818710|emb|CAN65039.1| (e_value=4e-155) hypothetical protein VITISV_009459 [Vitis vinifera];; (*TAIR) AT1G69360.1 (e_value=4e-59) | Symbols: | Plant protein of unknown function (DUF863) | chr1:26072520-26075420 REVERSE LENGTH=896;; (*ITAG) Solyc04g005500.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:333133-336786 transcript_region:SL2.40ch04:333133..336786- functional_description:"Os03g0758600 protein (Fragment) (AHRD V1 *-*- Q0DNE0_ORYSJ); contains Interpro domain(s) IPR008581 Protein of unknown function DUF863, plant "; NbS00037701g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|372; (*GB) gi|225423551|ref|XP_002274884.1| (e_value=7e-176) PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9ZQ74|PP146_ARATH (e_value=3e-139) Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1;; (*TAIR) AT2G03380.1 (e_value=2e-140) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1028292-1030361 FORWARD LENGTH=689;; (*ITAG) Solyc02g079380.1.1 (e_value=9e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38544314-38546749 transcript_region:SL2.40ch02:38544314..38546749- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KMD0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002896g0003.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|255547618|ref|XP_002514866.1| (e_value=9e-58) glutaredoxin, grx, putative [Ricinus communis];; (*SWP) sp|Q7G8Y5|GRXC1_ORYSJ (e_value=3e-42) Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1 PE=3 SV=1;; (*TAIR) AT5G14070.1 (e_value=1e-40) | Symbols: ROXY2 | Thioredoxin superfamily protein | chr5:4541915-4542337 FORWARD LENGTH=140;; (*ITAG) Solyc05g015910.1.1 (e_value=7e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:12973179-12973574 transcript_region:SL2.40ch05:12973179..12973574+ go_terms:GO:0008794 functional_description:"Glutaredoxin (AHRD V1 **** B9GZC7_POPTR); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0008794 NbS00002896g0205.1 protein AED:0.13 eAED:0.13 QI:302|0.91|0.76|1|0.83|0.84|13|0|1434 NbS00030018g0009.1 protein AED:0.38 eAED:0.41 QI:110|0.71|0.62|1|0.42|0.62|8|0|338; (*GB) gi|224140313|ref|XP_002323527.1| (e_value=8e-117) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=4e-41) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT3G55640.1 (e_value=6e-106) | Symbols: | Mitochondrial substrate carrier family protein | chr3:20640048-20642411 FORWARD LENGTH=332;; (*ITAG) Solyc09g011360.2.1 (e_value=2e-109) genomic_reference:SL2.40ch09 gene_region:4697445-4700991 transcript_region:SL2.40ch09:4697445..4700991- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10NJ7_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00030018g0008.1 protein AED:0.29 eAED:0.29 QI:369|0.75|0.77|1|0.87|0.77|9|444|425; (*GB) gi|225449360|ref|XP_002277622.1| (e_value=1e-161) PREDICTED: protein DA1-related 2 [Vitis vinifera];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=9e-139) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=7e-140) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc05g052910.2.1 (e_value=1e-177) genomic_reference:SL2.40ch05 gene_region:62226323-62233083 transcript_region:SL2.40ch05:62226323..62233083- go_terms:GO:0008270 functional_description:"Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00043484g0004.1 protein AED:0.04 eAED:0.04 QI:0|0.66|0.75|1|0.66|0.5|4|154|997; (*GB) gi|359490050|ref|XP_002268598.2| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=0.0) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=0.0) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc03g093330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:48015122-48019577 transcript_region:SL2.40ch03:48015122..48019577- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00013428g0003.1 protein AED:0.03 eAED:0.04 QI:0|1|0|1|1|1|2|0|358; (*GB) gi|119331576|gb|ABL63114.1| (e_value=1e-72) DNA-binding protein [Catharanthus roseus];; (*TAIR) AT3G51060.1 (e_value=1e-58) | Symbols: STY1, SRS1 | Lateral root primordium (LRP) protein-related | chr3:18964606-18966130 FORWARD LENGTH=370;; (*ITAG) Solyc04g080970.2.1 (e_value=2e-110) genomic_reference:SL2.40ch04 gene_region:62620623-62622236 transcript_region:SL2.40ch04:62620623..62622236- functional_description:"Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbS00053724g0003.1 protein AED:0.31 eAED:0.95 QI:0|0|0|1|1|1|3|0|295; (*GB) gi|255561307|ref|XP_002521664.1| (e_value=8e-104) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=1e-79) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1;; (*TAIR) AT1G25360.1 (e_value=9e-81) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790;; (*ITAG) Solyc04g082870.1.1 (e_value=5e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00056434g0004.1 protein AED:0.09 eAED:0.09 QI:71|0.75|0.6|1|0.75|0.6|5|23|340; (*GB) gi|359481589|ref|XP_002282804.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263058 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=2e-152) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc09g009540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2948975-2953213 transcript_region:SL2.40ch09:2948975..2953213- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00013074g0010.1 protein AED:0.09 eAED:0.09 QI:262|1|1|1|0.75|0.8|5|176|240; (*GB) gi|224068024|ref|XP_002302651.1| (e_value=5e-110) predicted protein [Populus trichocarpa];; (*SWP) sp|P92964|RSP31_ARATH (e_value=1e-93) Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2;; (*TAIR) AT3G61860.1 (e_value=9e-95) | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:22900311-22902159 REVERSE LENGTH=264;; (*ITAG) Solyc10g009330.2.1 (e_value=4e-109) genomic_reference:SL2.40ch10 gene_region:3406871-3409405 transcript_region:SL2.40ch10:3406871..3409405+ go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 ***- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00013074g0012.1 protein AED:0.00 eAED:0.00 QI:6|1|1|1|0|0|2|161|141; (*GB) gi|222640671|gb|EEE68803.1| (e_value=4e-13) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00037676g0002.1 protein AED:0.72 eAED:0.72 QI:39|1|0.5|1|0|0|2|90|83; (*GB) gi|255584255|ref|XP_002532865.1| (e_value=2e-27) protein kinase atn1, putative [Ricinus communis];; (*TAIR) AT5G01850.1 (e_value=3e-22) | Symbols: | Protein kinase superfamily protein | chr5:332829-334180 FORWARD LENGTH=333; NbS00002957g0015.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.33|1|0.5|0.66|3|0|188; (*GB) gi|225426371|ref|XP_002269437.1| (e_value=1e-63) PREDICTED: protein LURP-one-related 4 [Vitis vinifera];; (*SWP) sp|Q9SH27|LOR4_ARATH (e_value=5e-41) Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1;; (*TAIR) AT1G63410.1 (e_value=8e-42) | Symbols: | Protein of unknown function (DUF567) | chr1:23510075-23511997 REVERSE LENGTH=208;; (*ITAG) Solyc08g080750.2.1 (e_value=2e-118) genomic_reference:SL2.40ch08 gene_region:61123966-61125305 transcript_region:SL2.40ch08:61123966..61125305+ functional_description:"GTP binding protein (AHRD V1 **-- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00002957g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.93|0.93|1|0.86|0.81|16|401|628; (*GB) gi|359475997|ref|XP_002280681.2| (e_value=0.0) PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8RWG1|Y4139_ARATH (e_value=0.0) Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1;; (*TAIR) AT4G31390.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:15233126-15236764 FORWARD LENGTH=682;; (*ITAG) Solyc08g074560.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:55830317-55845022 transcript_region:SL2.40ch08:55830317..55845022- go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_CHICK); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00002957g0011.1 protein AED:0.32 eAED:0.32 QI:92|0.42|0.5|1|0.71|0.75|8|260|283; (*GB) gi|224083793|ref|XP_002307125.1| (e_value=1e-162) predicted protein [Populus trichocarpa];; (*SWP) sp|O64862|CTU1_ARATH (e_value=3e-154) Cytoplasmic tRNA 2-thiolation protein 1 OS=Arabidopsis thaliana GN=NCS6 PE=2 SV=2;; (*TAIR) AT2G44270.1 (e_value=2e-155) | Symbols: ROL5 | repressor of lrx1 | chr2:18298078-18300153 REVERSE LENGTH=355;; (*ITAG) Solyc08g074590.2.1 (e_value=1e-147) genomic_reference:SL2.40ch08 gene_region:55854463-55859432 transcript_region:SL2.40ch08:55854463..55859432- go_terms:GO:0005515,GO:0000049 functional_description:"tRNA 2-thiocytidine biosynthesis protein TtcA (AHRD V1 **** TTCA_MYXXD); contains Interpro domain(s) IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA "; GO:0005515,GO:0000049 NbS00000946g0007.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|264; (*GB) gi|224091933|ref|XP_002309405.1| (e_value=9e-138) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-86) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=3e-77) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc10g083170.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62364083-62366056 transcript_region:SL2.40ch10:62364083..62366056- go_terms:GO:0018502 functional_description:"2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (AHRD V1 **** LINC_PSEPA); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0018502 NbS00000946g0011.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.75|1|1|4|0|395; (*GB) gi|13752458|gb|AAK38665.1| (e_value=6e-109) stem secoisolariciresinol dehydrogenase [Forsythia x intermedia];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=5e-75) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT1G52340.1 (e_value=4e-65) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc10g083180.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62367751-62373732 transcript_region:SL2.40ch10:62367751..62373732- go_terms:GO:0010301,GO:0043621 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **-* ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301,GO:0043621 NbS00000946g0021.1 protein AED:0.31 eAED:0.56 QI:233|0.25|0.4|1|0.5|0.4|5|0|238; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=6e-57) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*SWP) sp|O81832|Y4729_ARATH (e_value=5e-16) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT2G25320.1 (e_value=1e-42) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=1e-58) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00000946g0029.1 protein AED:0.00 eAED:0.00 QI:388|1|1|1|0|0.5|2|130|118 NbS00000946g0027.1 protein AED:0.18 eAED:0.20 QI:0|0.66|0.5|1|0.66|0.5|4|0|699; (*GB) gi|359482028|ref|XP_002275906.2| (e_value=0.0) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=1e-30) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT3G11590.1 (e_value=3e-162) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). | chr3:3660628-3663537 FORWARD LENGTH=622;; (*ITAG) Solyc10g083190.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62377262-62380326 transcript_region:SL2.40ch10:62377262..62380326+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00000946g0030.1 protein AED:0.32 eAED:0.38 QI:0|0|0|1|0|0|3|0|215 NbS00000946g0026.1 protein AED:0.08 eAED:0.31 QI:0|0|0|1|0|0|2|0|89 NbS00000946g0031.1 protein AED:0.43 eAED:0.50 QI:0|0|0|1|0|0|2|0|82; (*GB) gi|113205445|gb|AAW28576.2| (e_value=4e-20) Gag-pol polyprotein, putative [Solanum demissum];; (*ITAG) Solyc07g018060.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8977086-8979008 transcript_region:SL2.40ch07:8977086..8979008- functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *-*- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00048198g0001.1 protein AED:0.15 eAED:0.15 QI:0|1|0.66|1|1|1|3|118|61 NbS00060516g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|340; (*GB) gi|255564910|ref|XP_002523448.1| (e_value=5e-171) cysteine protease, putative [Ricinus communis];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=4e-129) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G45890.1 (e_value=1e-134) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc12g056010.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47345935-47347263 transcript_region:SL2.40ch12:47345935..47347263+ go_terms:GO:0006508,GO:0008234 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-- CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0006508,GO:0008234 NbS00060516g0005.1 protein AED:0.43 eAED:0.72 QI:0|0|0|1|0|0|2|0|74; (*ITAG) Solyc12g056020.1.1 (e_value=7e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47348883-47350234 transcript_region:SL2.40ch12:47348883..47350234+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00057929g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=3e-24) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g044710.1.1 (e_value=5e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00019470g0001.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|595; (*GB) gi|225434090|ref|XP_002273695.1| (e_value=9e-68) PREDICTED: uncharacterized protein LOC100252686 [Vitis vinifera];; (*TAIR) AT2G44190.1 (e_value=2e-60) | Symbols: EDE1, QWRF5 | Family of unknown function (DUF566) | chr2:18272346-18274332 FORWARD LENGTH=474;; (*ITAG) Solyc01g096840.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79600263-79602243 transcript_region:SL2.40ch01:79600263..79602243- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00024849g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|81; (*ITAG) Solyc10g084070.1.1 (e_value=7e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63070097-63070339 transcript_region:SL2.40ch10:63070097..63070339+ functional_description:"Unknown Protein (AHRD V1)"; NbS00026738g0001.1 protein AED:0.34 eAED:0.42 QI:37|1|0.5|1|0|0|2|14|22 NbS00037407g0008.1 protein AED:0.32 eAED:0.51 QI:0|0|0|1|1|1|3|0|166; (*GB) gi|225446416|ref|XP_002275728.1| (e_value=1e-31) PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera];; (*SWP) sp|Q9S758|SPL5_ARATH (e_value=1e-25) Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1;; (*TAIR) AT3G15270.1 (e_value=8e-27) | Symbols: SPL5 | squamosa promoter binding protein-like 5 | chr3:5140624-5141256 REVERSE LENGTH=181;; (*ITAG) Solyc07g053810.2.1 (e_value=1e-33) genomic_reference:SL2.40ch07 gene_region:59554791-59557127 transcript_region:SL2.40ch07:59554791..59557127- go_terms:GO:0005634 functional_description:"Squamosa promoter binding-like protein (AHRD V1 ***- Q52UU1_9ROSI); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00037407g0009.1 protein AED:0.16 eAED:0.16 QI:157|1|0.95|1|0.84|0.85|20|296|762; (*GB) gi|224132916|ref|XP_002327911.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G03780.2 (e_value=0.0) | Symbols: TPX2 | targeting protein for XKLP2 | chr1:947785-951696 REVERSE LENGTH=758;; (*ITAG) Solyc10g008210.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2325581-2332352 transcript_region:SL2.40ch10:2325581..2332352+ go_terms:GO:0008017 functional_description:"Os07g0507200 protein (Fragment) (AHRD V1 *-*- C7J530_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; GO:0008017 NbS00028522g0007.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|1|1|2|0|550; (*GB) gi|225429750|ref|XP_002282410.1| (e_value=0.0) PREDICTED: coatomer subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=0.0) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=0.0) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc10g081920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62184972-62189867 transcript_region:SL2.40ch10:62184972..62189867- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00028522g0010.1 protein AED:0.34 eAED:0.35 QI:17|0|0|1|1|0.5|2|0|349; (*GB) gi|225429750|ref|XP_002282410.1| (e_value=0.0) PREDICTED: coatomer subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=0.0) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=0.0) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00028522g0009.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|0|0|2|0|226; (*GB) gi|356534536|ref|XP_003535809.1| (e_value=2e-70) PREDICTED: uncharacterized protein LOC100788592 [Glycine max];; (*TAIR) AT3G11660.1 (e_value=6e-72) | Symbols: NHL1 | NDR1/HIN1-like 1 | chr3:3679031-3679660 REVERSE LENGTH=209;; (*ITAG) Solyc01g007220.2.1 (e_value=3e-101) genomic_reference:SL2.40ch01 gene_region:1800921-1801986 transcript_region:SL2.40ch01:1800921..1801986+ functional_description:"NHL1 (Fragment) (AHRD V1 **-- B0LZM3_ARATH); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00000726g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|480; (*GB) gi|48093459|gb|AAT40106.1| (e_value=0.0) putative UDP-glucose dehydrogenase 2 [Nicotiana tabacum];; (*SWP) sp|Q96558|UGDH_SOYBN (e_value=0.0) UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G15490.1 (e_value=0.0) | Symbols: | UDP-glucose 6-dehydrogenase family protein | chr5:5027872-5029314 REVERSE LENGTH=480;; (*ITAG) Solyc02g067080.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31887125-31888905 transcript_region:SL2.40ch02:31887125..31888905- go_terms:GO:0016628 functional_description:"UDP-D-glucose dehydrogenase (AHRD V1 ***- D2WK25_GOSHI); contains Interpro domain(s) IPR014028 UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding "; GO:0016628 NbS00000726g0009.1 protein AED:0.36 eAED:0.37 QI:0|0|0|1|0|0|3|0|370; (*GB) gi|356526483|ref|XP_003531847.1| (e_value=3e-32) PREDICTED: uncharacterized protein LOC100814580 [Glycine max];; (*TAIR) AT5G61190.1 (e_value=3e-13) | Symbols: | putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain | chr5:24615480-24619886 FORWARD LENGTH=995;; (*ITAG) Solyc02g067070.2.1 (e_value=1e-129) genomic_reference:SL2.40ch02 gene_region:31881479-31885739 transcript_region:SL2.40ch02:31881479..31885739- go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00006108g0005.1 protein AED:0.65 eAED:0.65 QI:0|0|0|0.5|1|1|4|0|173 NbS00006108g0006.1 protein AED:0.00 eAED:0.00 QI:578|1|1|1|0.33|0.25|4|255|514; (*GB) gi|224138222|ref|XP_002322760.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06560.1 (e_value=4e-166) | Symbols: | Protein of unknown function, DUF593 | chr5:2003678-2005543 REVERSE LENGTH=518;; (*ITAG) Solyc10g081620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61992772-61996010 transcript_region:SL2.40ch10:61992772..61996010+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00006108g0007.1 protein AED:0.12 eAED:0.12 QI:0|1|1|1|1|1|2|299|511; (*GB) gi|255566233|ref|XP_002524104.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q67XX3|FB252_ARATH (e_value=0.0) F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1;; (*TAIR) AT5G06550.1 (e_value=0.0) | Symbols: | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:2001246-2003068 REVERSE LENGTH=502;; (*ITAG) Solyc10g081630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61997268-61999828 transcript_region:SL2.40ch10:61997268..61999828+ functional_description:"JmjC domain containing protein (AHRD V1 **-- C5PBB2_COCP7); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; NbS00009378g0006.1 protein AED:0.13 eAED:0.13 QI:0|1|0.92|1|0.91|0.84|13|91|785; (*GB) gi|225455563|ref|XP_002267584.1| (e_value=0.0) PREDICTED: 65-kDa microtubule-associated protein 3 [Vitis vinifera];; (*SWP) sp|Q9FHM4|MA653_ARATH (e_value=2e-172) 65-kDa microtubule-associated protein 3 OS=Arabidopsis thaliana GN=MAP65-3 PE=1 SV=1;; (*TAIR) AT5G51600.1 (e_value=2e-173) | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule associated protein (MAP65/ASE1) family protein | chr5:20961061-20964080 REVERSE LENGTH=707;; (*ITAG) Solyc01g091380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76771258-76775467 transcript_region:SL2.40ch01:76771258..76775467- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00009378g0007.1 protein AED:0.04 eAED:0.11 QI:0|0|0|1|0|0|4|0|652; (*GB) gi|359489530|ref|XP_002273654.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254100 [Vitis vinifera];; (*TAIR) AT3G60850.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22482053-22483999 FORWARD LENGTH=648;; (*ITAG) Solyc01g091390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76778729-76784064 transcript_region:SL2.40ch01:76778729..76784064- functional_description:"Unknown Protein (AHRD V1)"; NbS00004883g0004.1 protein AED:0.18 eAED:0.18 QI:21|1|0.83|1|1|1|6|129|185; (*GB) gi|224133484|ref|XP_002321579.1| (e_value=1e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|P42749|UBC5_ARATH (e_value=2e-96) Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2;; (*TAIR) AT1G63800.1 (e_value=2e-97) | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | chr1:23667888-23669003 REVERSE LENGTH=185;; (*ITAG) Solyc11g071870.1.1 (e_value=3e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52295316-52297648 transcript_region:SL2.40ch11:52295316..52297648+ go_terms:GO:0016567,GO:0043687 functional_description:"Ubiquitin-conjugating enzyme (AHRD V1 ***- D2VN46_NAEGR); contains Interpro domain(s) IPR015581 Ubiquitin-conjugating enzyme "; GO:0016567,GO:0043687 NbS00046764g0001.1 protein AED:0.03 eAED:0.03 QI:516|1|1|1|0.8|0.66|6|441|441; (*GB) gi|189345250|gb|ACD92981.1| (e_value=0.0) VTC2-like protein [Nicotiana tabacum];; (*SWP) sp|Q9FLP9|GGAP2_ARATH (e_value=0.0) GDP-L-galactose phosphorylase 2 OS=Arabidopsis thaliana GN=VTC5 PE=1 SV=1;; (*TAIR) AT5G55120.1 (e_value=0.0) | Symbols: VTC5 | galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases | chr5:22369515-22371709 FORWARD LENGTH=431;; (*ITAG) Solyc02g091510.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47361290-47366318 transcript_region:SL2.40ch02:47361290..47366318- go_terms:GO:0005515 functional_description:"GDP-L-galactose phosphorylase 2"; GO:0005515 NbS00057165g0002.1 protein AED:0.48 eAED:0.70 QI:16|0|0|1|1|0.5|2|0|32 NbS00010827g0004.1 protein AED:0.09 eAED:0.10 QI:0|0|0|1|1|1|2|0|944; (*GB) gi|359482790|ref|XP_002268671.2| (e_value=0.0) PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera];; (*SWP) sp|Q7XA39|RGA4_SOLBU (e_value=3e-156) Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=8e-132) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc09g005290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:220544-223354 transcript_region:SL2.40ch09:220544..223354+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00010827g0018.1 protein AED:0.36 eAED:0.36 QI:303|1|1|1|0.8|0.83|6|196|254; (*GB) gi|225440690|ref|XP_002280296.1| (e_value=2e-131) PREDICTED: GDSL esterase/lipase CPRD49 [Vitis vinifera];; (*SWP) sp|Q9SRM5|CPR49_ARATH (e_value=1e-115) GDSL esterase/lipase CPRD49 OS=Arabidopsis thaliana GN=CPRD49 PE=2 SV=1;; (*TAIR) AT3G11210.1 (e_value=1e-116) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr3:3511101-3512899 REVERSE LENGTH=256;; (*ITAG) Solyc06g051720.2.1 (e_value=8e-125) genomic_reference:SL2.40ch06 gene_region:31754191-31758216 transcript_region:SL2.40ch06:31754191..31758216- go_terms:GO:0004091 functional_description:"Isoamyl acetate-hydrolyzing esterase (AHRD V1 **-- B6T5T9_MAIZE); contains Interpro domain(s) IPR013831 Esterase, SGNH hydrolase-type, subgroup "; GO:0004091 NbS00010827g0016.1 protein AED:0.16 eAED:0.16 QI:10|1|0.92|1|1|1|13|425|373; (*GB) gi|225461191|ref|XP_002283163.1| (e_value=0.0) PREDICTED: mRNA cap guanine-N7 methyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9LHQ7|MCES1_ARATH (e_value=0.0) mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1;; (*TAIR) AT3G20650.1 (e_value=0.0) | Symbols: | mRNA capping enzyme family protein | chr3:7221168-7223939 REVERSE LENGTH=370;; (*ITAG) Solyc09g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:224168-231807 transcript_region:SL2.40ch09:224168..231807- go_terms:GO:0004482 functional_description:"mRNA cap guanine-N7 methyltransferase (AHRD V1 **** B9SQY3_RICCO); contains Interpro domain(s) IPR016899 mRNA (guanine-N(7))-methyltransferase "; GO:0004482 NbS00010827g0017.1 protein AED:0.18 eAED:0.18 QI:0|0.92|0.92|1|0.92|0.85|14|541|512; (*GB) gi|224087748|ref|XP_002308217.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M028|LMBD2_ARATH (e_value=0.0) LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1;; (*TAIR) AT5G01460.1 (e_value=0.0) | Symbols: | LMBR1-like membrane protein | chr5:186823-190008 FORWARD LENGTH=509;; (*ITAG) Solyc09g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:233708-240148 transcript_region:SL2.40ch09:233708..240148- functional_description:"LIMR family protein At5g01460 (AHRD V1 ***- LMBD2_ARATH); contains Interpro domain(s) IPR006876 LMBR1-like conserved region "; NbS00010827g0020.1 protein AED:0.44 eAED:0.46 QI:0|0.33|0|1|0.33|0.25|4|0|215; (*GB) gi|356544514|ref|XP_003540695.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100796393 [Glycine max];; (*SWP) sp|Q67XL4|Y3544_ARATH (e_value=7e-35) Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1;; (*TAIR) AT2G28480.1 (e_value=7e-75) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain protein | chr2:12176642-12178031 REVERSE LENGTH=372;; (*ITAG) Solyc09g005270.2.1 (e_value=9e-108) genomic_reference:SL2.40ch09 gene_region:207702-211188 transcript_region:SL2.40ch09:207702..211188- go_terms:GO:0003723 functional_description:"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V1 *--- CRS1_MAIZE); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00010827g0006.1 protein AED:0.46 eAED:0.62 QI:0|0|0.33|1|1|1|3|0|126 NbS00003300g0003.1 protein AED:0.07 eAED:0.07 QI:312|1|1|1|0.5|0.66|3|488|591; (*GB) gi|225461963|ref|XP_002266700.1| (e_value=0.0) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|Q0DCT8|G11A_ORYSJ (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. japonica GN=Os06g0291600 PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc10g005770.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:616539-620642 transcript_region:SL2.40ch10:616539..620642- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00036077g0002.1 protein AED:0.11 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|73; (*GB) gi|356518157|ref|XP_003527748.1| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100806176 [Glycine max];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=2e-14) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G61620.1 (e_value=1e-18) | Symbols: | myb-like transcription factor family protein | chr5:24772383-24773507 FORWARD LENGTH=317;; (*ITAG) Solyc05g013420.1.1 (e_value=3e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:6496647-6497204 transcript_region:SL2.40ch05:6496647..6497204+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (AHRD V1 ***- D7MV43_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00036077g0004.1 protein AED:0.20 eAED:0.20 QI:333|0.83|0.92|0.92|1|1|13|596|805; (*GB) gi|255574009|ref|XP_002527922.1| (e_value=0.0) copper amine oxidase, putative [Ricinus communis];; (*SWP) sp|Q07121|AMO1_ARTS1 (e_value=3e-159) Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1;; (*TAIR) AT2G42490.1 (e_value=0.0) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc05g013440.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6501962-6511458 transcript_region:SL2.40ch05:6501962..6511458- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00029709g0125.1 protein AED:0.02 eAED:0.02 QI:19|1|1|1|0.5|0.66|3|250|482 NbS00029709g0123.1 protein AED:0.05 eAED:0.05 QI:0|1|0.33|1|0.5|0.33|3|0|116 NbS00029709g0127.1 protein AED:0.10 eAED:0.10 QI:114|0.33|0.75|0.75|1|1|4|76|471 NbS00029709g0102.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|157 NbS00029709g0130.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|0|0.66|3|0|149 NbS00029709g0132.1 protein AED:0.39 eAED:0.40 QI:0|1|0|1|1|1|2|0|155 NbS00029709g0108.1 protein AED:0.22 eAED:0.22 QI:108|1|1|1|0.90|0.91|12|670|285 NbS00029709g0114.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|1|1|3|0|107 NbS00029709g0136.1 protein AED:0.42 eAED:0.42 QI:0|0|0|1|0|0|3|0|102 NbS00032560g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|1|1|2|0|457; (*GB) gi|225443982|ref|XP_002274153.1| (e_value=0.0) PREDICTED: protein kinase PINOID [Vitis vinifera];; (*SWP) sp|O64682|PID_ARATH (e_value=0.0) Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1;; (*TAIR) AT2G34650.1 (e_value=0.0) | Symbols: PID, ABR | Protein kinase superfamily protein | chr2:14589934-14591557 REVERSE LENGTH=438;; (*ITAG) Solyc12g006690.1.1 (e_value=2e-133) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1152815-1155108 transcript_region:SL2.40ch12:1152815..1155108- go_terms:GO:0004676 functional_description:"Kinase family protein (AHRD V1 **** D7LER6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004676 NbS00007981g0002.1 protein AED:0.09 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|242; (*ITAG) Solyc01g098620.2.1 (e_value=7e-80) genomic_reference:SL2.40ch01 gene_region:80844773-80845541 transcript_region:SL2.40ch01:80844773..80845541- functional_description:"Unknown Protein (AHRD V1)"; NbS00007981g0006.1 protein AED:0.21 eAED:0.21 QI:86|0.72|0.66|1|0.81|0.66|12|0|281; (*GB) gi|388499100|gb|AFK37616.1| (e_value=1e-109) unknown [Lotus japonicus];; (*SWP) sp|Q9VCX3|RM45_DROME (e_value=2e-11) Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster GN=mRpL45 PE=2 SV=1;; (*TAIR) AT5G27395.2 (e_value=8e-110) | Symbols: | Mitochondrial inner membrane translocase complex, subunit Tim44-related protein | chr5:9671845-9674085 REVERSE LENGTH=296;; (*ITAG) Solyc01g098630.2.1 (e_value=2e-176) genomic_reference:SL2.40ch01 gene_region:80846096-80853178 transcript_region:SL2.40ch01:80846096..80853178- go_terms:GO:0005744 functional_description:"Import inner membrane translocase subunit Tim44 (AHRD V1 *--- B3Q8B6_RHOPT); contains Interpro domain(s) IPR007379 Mitochondrial inner membrane translocase complex, subunit Tim44-related "; GO:0005744 NbS00012604g0001.1 protein AED:0.72 eAED:0.75 QI:0|0|0|0.8|1|1|5|0|105 NbS00003724g0018.1 protein AED:0.08 eAED:0.09 QI:0|0|0|1|1|1|2|467|169 NbS00003724g0019.1 protein AED:0.20 eAED:0.20 QI:0|0.57|0.62|1|0.28|0.25|8|0|326; (*GB) gi|255544606|ref|XP_002513364.1| (e_value=1e-86) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|O34614|YTQB_BACSU (e_value=1e-21) Putative rRNA methylase ytqB OS=Bacillus subtilis (strain 168) GN=ytqB PE=3 SV=1;; (*TAIR) AT1G16445.1 (e_value=2e-82) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:5617811-5619303 FORWARD LENGTH=274;; (*ITAG) Solyc10g005540.2.1 (e_value=4e-125) genomic_reference:SL2.40ch10 gene_region:451669-454996 transcript_region:SL2.40ch10:451669..454996+ functional_description:"SAM-dependent methyltransferase (AHRD V1 ***- D2ELV5_PEDAC); contains Interpro domain(s) IPR010719 Putative rRNA methylase "; NbS00031150g0002.1 protein AED:0.09 eAED:0.13 QI:0|1|0.5|1|0|0|2|197|294; (*GB) gi|225446740|ref|XP_002282632.1| (e_value=2e-152) PREDICTED: V-type proton ATPase subunit D isoform 1 [Vitis vinifera];; (*SWP) sp|Q9XGM1|VATD_ARATH (e_value=3e-140) V-type proton ATPase subunit D OS=Arabidopsis thaliana GN=VHA-D PE=1 SV=2;; (*TAIR) AT3G58730.1 (e_value=2e-141) | Symbols: | vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) | chr3:21718495-21719280 REVERSE LENGTH=261;; (*ITAG) Solyc01g073690.2.1 (e_value=6e-156) genomic_reference:SL2.40ch01 gene_region:70303278-70304360 transcript_region:SL2.40ch01:70303278..70304360- go_terms:GO:0033178 functional_description:"V-type ATP synthase subunit D (AHRD V1 ***- B0WRC9_CULQU); contains Interpro domain(s) IPR002699 ATPase, V1/A1 complex, subunit D "; GO:0033178 NbS00021139g0001.1 protein AED:0.20 eAED:0.22 QI:0|0|0|0.33|1|1|3|0|205; (*GB) gi|359496533|ref|XP_003635259.1| (e_value=2e-59) PREDICTED: protein FD-like [Vitis vinifera];; (*SWP) sp|Q84JK2|FD_ARATH (e_value=8e-38) Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1;; (*TAIR) AT4G35900.1 (e_value=6e-39) | Symbols: FD, FD-1, atbzip14 | Basic-leucine zipper (bZIP) transcription factor family protein | chr4:17004746-17005952 FORWARD LENGTH=285;; (*ITAG) Solyc02g083520.2.1 (e_value=4e-53) genomic_reference:SL2.40ch02 gene_region:41465731-41466655 transcript_region:SL2.40ch02:41465731..41466655+ go_terms:GO:0005515,GO:0016563 functional_description:"BZIP transcription factor (AHRD V1 *-** Q32WR6_MALDO); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0016563 NbS00008740g0004.1 protein AED:0.26 eAED:0.26 QI:0|0.83|0.71|0.85|0.66|0.71|7|0|280; (*GB) gi|77999259|gb|ABB16976.1| (e_value=2e-167) GTP-binding-like protein [Solanum tuberosum];; (*SWP) sp|Q38906|TOC34_ARATH (e_value=1e-130) Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2;; (*TAIR) AT5G05000.1 (e_value=1e-131) | Symbols: TOC34, ATTOC34, OEP34 | translocon at the outer envelope membrane of chloroplasts 34 | chr5:1474262-1475772 REVERSE LENGTH=313;; (*ITAG) Solyc05g052160.2.1 (e_value=5e-167) genomic_reference:SL2.40ch05 gene_region:61599303-61602074 transcript_region:SL2.40ch05:61599303..61602074- go_terms:GO:0005525,GO:0003924 functional_description:"Translocase of chloroplast 34 (AHRD V1 **-- B6TBT7_MAIZE); contains Interpro domain(s) IPR005688 Chloroplast protein import component Toc34 "; GO:0005525,GO:0003924 NbS00037689g0008.1 protein AED:0.19 eAED:0.20 QI:0|0.33|0|0.5|1|0.5|4|0|264; (*GB) gi|4927284|gb|AAD33072.1|AF149251_1 (e_value=6e-132) secretory peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9SB81|PER42_ARATH (e_value=2e-112) Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2;; (*TAIR) AT4G21960.1 (e_value=2e-113) | Symbols: PRXR1 | Peroxidase superfamily protein | chr4:11646613-11648312 REVERSE LENGTH=330;; (*ITAG) Solyc02g080530.2.1 (e_value=2e-132) genomic_reference:SL2.40ch02 gene_region:39317455-39319147 transcript_region:SL2.40ch02:39317455..39319147- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** C7DYB2_9ERIC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00057951g0001.1 protein AED:0.29 eAED:0.29 QI:411|0.71|0.75|0.87|0.71|0.62|8|348|414; (*GB) gi|356557102|ref|XP_003546857.1| (e_value=0.0) PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max];; (*SWP) sp|Q39055|CNX2_ARATH (e_value=0.0) Molybdopterin biosynthesis protein CNX2 OS=Arabidopsis thaliana GN=CNX2 PE=2 SV=1;; (*TAIR) AT2G31955.2 (e_value=0.0) | Symbols: CNX2 | cofactor of nitrate reductase and xanthine dehydrogenase 2 | chr2:13584635-13586484 REVERSE LENGTH=390;; (*ITAG) Solyc01g073730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70346585-70351511 transcript_region:SL2.40ch01:70346585..70351511- go_terms:GO:0051539,GO:0008152,GO:0051536,GO:0006777,GO:0019008 functional_description:"Molybdenum cofactor biosynthesis protein A (AHRD V1 ***- D0MDU9_RHOM4); contains Interpro domain(s) IPR013483 Molybdenum cofactor biosynthesis protein A "; GO:0051539,GO:0008152,GO:0051536,GO:0006777,GO:0019008 NbS00022538g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0.5|1|0|0|2|198|140; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=1e-81) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=1e-68) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=8e-70) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=2e-84) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00010220g0002.1 protein AED:0.19 eAED:0.19 QI:267|1|0.83|1|0|0.16|6|454|103; (*GB) gi|224116208|ref|XP_002317239.1| (e_value=5e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g078950.2.1 (e_value=9e-37) genomic_reference:SL2.40ch02 gene_region:38135936-38141941 transcript_region:SL2.40ch02:38135936..38141941- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9HYZ2_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00021927g0006.1 protein AED:0.30 eAED:0.33 QI:0|0.25|0.2|1|0.5|0.6|5|0|157; (*GB) gi|147845395|emb|CAN79051.1| (e_value=2e-30) hypothetical protein VITISV_025926 [Vitis vinifera];; (*SWP) sp|Q9SFF9|GL17_ARATH (e_value=2e-21) Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1;; (*TAIR) AT3G05950.1 (e_value=1e-22) | Symbols: | RmlC-like cupins superfamily protein | chr3:1781130-1781964 REVERSE LENGTH=229;; (*ITAG) Solyc09g090000.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64927210-64929383 transcript_region:SL2.40ch09:64927210..64929383- go_terms:GO:0050162 functional_description:"Germin-like protein 12 (AHRD V1 ***- C6T5E1_SOYBN); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0050162 NbS00021927g0005.1 protein AED:0.62 eAED:0.62 QI:0|0|0|0.5|0|0|2|0|113 NbS00045865g0005.1 protein AED:0.21 eAED:0.28 QI:0|0|0|1|0|0|2|0|266; (*GB) gi|359493751|ref|XP_002279982.2| (e_value=1e-36) PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera];; (*SWP) sp|Q9T048|DRL27_ARATH (e_value=2e-25) Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1;; (*TAIR) AT4G27190.1 (e_value=1e-26) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13620977-13623934 REVERSE LENGTH=985;; (*ITAG) Solyc06g048910.1.1 (e_value=2e-113) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:28429688-28434693 transcript_region:SL2.40ch06:28429688..28434693+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00045865g0004.1 protein AED:0.42 eAED:0.43 QI:0|0|0|0.5|0|0|2|0|94; (*GB) gi|225461136|ref|XP_002280016.1| (e_value=9e-15) PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera];; (*TAIR) AT4G27220.1 (e_value=5e-13) | Symbols: | NB-ARC domain-containing disease resistance protein | chr4:13633953-13636712 REVERSE LENGTH=919;; (*ITAG) Solyc08g013970.1.1 (e_value=7e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:3370576-3373318 transcript_region:SL2.40ch08:3370576..3373318+ go_terms:GO:0006952,GO:0005515,GO:0006915 functional_description:"Nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0006915 NbS00003257g0002.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|217|160; (*GB) gi|224094628|ref|XP_002310190.1| (e_value=2e-57) predicted protein [Populus trichocarpa];; (*TAIR) AT2G23690.1 (e_value=5e-52) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:10072297-10072788 FORWARD LENGTH=163;; (*ITAG) Solyc02g089990.1.1 (e_value=6e-93) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46255509-46255994 transcript_region:SL2.40ch02:46255509..46255994- go_terms:GO:0005515 functional_description:"TMV response-related protein (AHRD V1 *--- B6UG28_MAIZE)"; GO:0005515 NbS00003257g0004.1 protein AED:0.13 eAED:0.13 QI:277|1|1|1|0|0|3|301|154; (*GB) gi|359495759|ref|XP_003635083.1| (e_value=4e-44) PREDICTED: CASP-like protein At3g50810-like [Vitis vinifera];; (*SWP) sp|Q3ECT8|CSPL4_ARATH (e_value=2e-30) CASP-like protein At1g49405 OS=Arabidopsis thaliana GN=At1g49405 PE=3 SV=1;; (*TAIR) AT1G49405.1 (e_value=2e-31) | Symbols: | Uncharacterised protein family (UPF0497) | chr1:18284335-18284947 REVERSE LENGTH=152;; (*ITAG) Solyc02g090000.2.1 (e_value=6e-52) genomic_reference:SL2.40ch02 gene_region:46263082-46266622 transcript_region:SL2.40ch02:46263082..46266622- functional_description:"UPF0497 membrane protein At3g50810 (AHRD V1 ***- U497K_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00047492g0001.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|302; (*GB) gi|255551823|ref|XP_002516957.1| (e_value=3e-77) ring finger protein, putative [Ricinus communis];; (*SWP) sp|Q8L9T5|ATL2_ARATH (e_value=8e-59) RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2;; (*TAIR) AT3G16720.1 (e_value=6e-60) | Symbols: ATL2, TL2 | TOXICOS EN LEVADURA 2 | chr3:5692880-5693794 FORWARD LENGTH=304;; (*ITAG) Solyc01g066430.2.1 (e_value=9e-119) genomic_reference:SL2.40ch01 gene_region:66714715-66716016 transcript_region:SL2.40ch01:66714715..66716016- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00047492g0015.1 protein AED:0.18 eAED:0.18 QI:283|0.9|0.81|1|0.8|0.81|11|561|676; (*GB) gi|255551827|ref|XP_002516959.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q28GV1|CNDH2_XENTR (e_value=3e-18) Condensin-2 complex subunit H2 OS=Xenopus tropicalis GN=ncaph2 PE=2 SV=1;; (*TAIR) AT3G16730.1 (e_value=7e-169) | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695633-5698863 REVERSE LENGTH=683;; (*ITAG) Solyc12g099420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00010553g0001.1 protein AED:0.69 eAED:0.69 QI:0|0|0|0.4|1|1|5|0|110; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-17) hypothetical protein [Nicotiana tabacum]; NbS00010553g0003.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|79; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-19) hypothetical protein [Nicotiana tabacum]; NbS00014876g0017.1 protein AED:0.27 eAED:0.27 QI:163|1|0.66|1|0|0.66|3|0|184; (*GB) gi|47558817|gb|AAT35532.1| (e_value=7e-123) CAPIP1 [Capsicum annuum];; (*SWP) sp|Q9FGM1|PYL8_ARATH (e_value=1e-107) Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1;; (*TAIR) AT5G53160.2 (e_value=7e-109) | Symbols: RCAR3, PYL8 | regulatory components of ABA receptor 3 | chr5:21561026-21561953 FORWARD LENGTH=188;; (*ITAG) Solyc03g007310.2.1 (e_value=5e-125) genomic_reference:SL2.40ch03 gene_region:1873856-1877023 transcript_region:SL2.40ch03:1873856..1877023+ go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00014876g0014.1 protein AED:0.35 eAED:0.35 QI:81|0.96|0.92|1|0.92|0.85|28|342|1228; (*GB) gi|302143674|emb|CBI22535.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FGM0|FTSHB_ARATH (e_value=0.0) ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1;; (*TAIR) AT5G53170.1 (e_value=0.0) | Symbols: FTSH11 | FTSH protease 11 | chr5:21563023-21567922 REVERSE LENGTH=806;; (*ITAG) Solyc03g007330.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1890896-1902600 transcript_region:SL2.40ch03:1890896..1902600+ go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_RICTY); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00014876g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|1|1|1|3|0|275; (*GB) gi|224116886|ref|XP_002331838.1| (e_value=1e-108) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24130.1 (e_value=1e-91) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8162247-8163825 FORWARD LENGTH=316;; (*ITAG) Solyc03g007340.2.1 (e_value=7e-133) genomic_reference:SL2.40ch03 gene_region:1902871-1905696 transcript_region:SL2.40ch03:1902871..1905696- functional_description:"Unknown Protein (AHRD V1)"; NbS00014876g0019.1 protein AED:0.10 eAED:0.10 QI:355|0.84|0.78|1|0.46|0.42|14|207|578; (*GB) gi|224112110|ref|XP_002316086.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMX4|PPA1_ARATH (e_value=0.0) Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1;; (*TAIR) AT1G13750.1 (e_value=0.0) | Symbols: | Purple acid phosphatases superfamily protein | chr1:4715490-4718091 REVERSE LENGTH=613;; (*ITAG) Solyc05g012260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5546798-5552510 transcript_region:SL2.40ch05:5546798..5552510- go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00046368g0002.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|359; (*GB) gi|225426038|ref|XP_002271526.1| (e_value=3e-75) PREDICTED: ethylene-responsive transcription factor CRF2 [Vitis vinifera];; (*SWP) sp|Q9SUQ2|CRF2_ARATH (e_value=2e-45) Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1;; (*TAIR) AT4G23750.2 (e_value=1e-46) | Symbols: CRF2, TMO3 | cytokinin response factor 2 | chr4:12376751-12377782 FORWARD LENGTH=343;; (*ITAG) Solyc08g081960.1.1 (e_value=1e-135) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:62045738-62046757 transcript_region:SL2.40ch08:62045738..62046757+ go_terms:GO:0003677 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- ERF4_NICSY); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00052493g0005.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|0|0.33|3|0|171; (*GB) gi|58200407|gb|AAW66459.1| (e_value=5e-50) WRKY transcription factor-b [Capsicum annuum];; (*SWP) sp|Q9FYA2|WRK75_ARATH (e_value=7e-35) Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1;; (*TAIR) AT5G13080.1 (e_value=5e-36) | Symbols: WRKY75, ATWRKY75 | WRKY DNA-binding protein 75 | chr5:4149928-4151019 REVERSE LENGTH=145;; (*ITAG) Solyc05g015850.2.1 (e_value=8e-49) genomic_reference:SL2.40ch05 gene_region:12420457-12423158 transcript_region:SL2.40ch05:12420457..12423158- go_terms:GO:0005515,GO:0003700 functional_description:"WRKY transcription factor-b (AHRD V1 **** Q5DJU0_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0005515,GO:0003700 NbS00025456g0015.1 protein AED:0.25 eAED:0.25 QI:0|0.71|0.75|1|0.85|0.75|8|284|1301; (*GB) gi|359472758|ref|XP_002276237.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242423 [Vitis vinifera];; (*SWP) sp|P18160|SPLA_DICDI (e_value=2e-46) Dual specificity protein kinase splA OS=Dictyostelium discoideum GN=splA PE=1 SV=3;; (*TAIR) AT2G35050.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr2:14769708-14774796 FORWARD LENGTH=1257;; (*ITAG) Solyc02g031860.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00025456g0018.1 protein AED:0.18 eAED:0.18 QI:368|0.71|0.87|1|0.57|0.5|8|0|702; (*GB) gi|297851594|ref|XP_002893678.1| (e_value=0.0) hypothetical protein ARALYDRAFT_336243 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8VXB1|HAK12_ORYSJ (e_value=0.0) Putative potassium transporter 12 OS=Oryza sativa subsp. japonica GN=HAK12 PE=2 SV=1;; (*TAIR) AT2G35060.1 (e_value=0.0) | Symbols: KUP11 | K+ uptake permease 11 | chr2:14775184-14778184 REVERSE LENGTH=792;; (*ITAG) Solyc02g031840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:17778515-17790343 transcript_region:SL2.40ch02:17778515..17790343+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** A9SMZ3_PHYPA); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00025456g0019.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.75|0|0.25|4|0|448; (*GB) gi|255565325|ref|XP_002523654.1| (e_value=5e-139) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G19950.1 (e_value=4e-126) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44860.1); Has 338 Blast hits to 330 proteins in 72 species: Archae - 2; Bacteria - 94; Metazoa - 7; Fungi - 0; Plants - 232; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:10809977-10810942 FORWARD LENGTH=321;; (*ITAG) Solyc02g031830.1.1 (e_value=1e-165) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:17755466-17756437 transcript_region:SL2.40ch02:17755466..17756437+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035735g0004.1 protein AED:0.01 eAED:0.01 QI:54|1|1|1|1|1|6|159|291; (*GB) gi|356552737|ref|XP_003544719.1| (e_value=8e-179) PREDICTED: pirin-like protein-like [Glycine max];; (*SWP) sp|Q9LPS9|PIRL1_ARATH (e_value=2e-142) Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1;; (*TAIR) AT1G50590.1 (e_value=2e-143) | Symbols: | RmlC-like cupins superfamily protein | chr1:18732378-18734053 REVERSE LENGTH=310;; (*ITAG) Solyc12g014590.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5578789-5581766 transcript_region:SL2.40ch12:5578789..5581766- functional_description:"Pirin (AHRD V1 ***- D7RJ70_CARPA); contains Interpro domain(s) IPR012093 Pirin "; NbS00049221g0001.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.33|1|1|3|0|67; (*ITAG) Solyc06g050860.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:30197053-30200697 transcript_region:SL2.40ch06:30197053..30200697- go_terms:GO:0005515 functional_description:"Speckle-type poz protein (AHRD V1 *--- B0X7L3_CULQU); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00039790g0008.1 protein AED:0.13 eAED:0.22 QI:42|0.33|0.25|1|0.33|0.5|4|0|248; (*GB) gi|225439844|ref|XP_002277868.1| (e_value=6e-38) PREDICTED: uncharacterized protein LOC100244737 [Vitis vinifera];; (*TAIR) AT2G37390.2 (e_value=3e-16) | Symbols: NAKR2 | Chloroplast-targeted copper chaperone protein | chr2:15694300-15695461 FORWARD LENGTH=258;; (*ITAG) Solyc10g085910.1.1 (e_value=8e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64253897-64256291 transcript_region:SL2.40ch10:64253897..64256291- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *--- Q84TB9_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00039790g0007.1 protein AED:0.25 eAED:0.25 QI:0|0.71|0.62|1|0.57|0.5|8|0|427; (*GB) gi|48093467|gb|AAT40110.1| (e_value=0.0) putative UDP-glucuronate decarboxylase 4 [Nicotiana tabacum];; (*SWP) sp|Q8NBZ7|UXS1_HUMAN (e_value=2e-134) UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1;; (*TAIR) AT3G53520.1 (e_value=0.0) | Symbols: UXS1, ATUXS1 | UDP-glucuronic acid decarboxylase 1 | chr3:19841635-19844057 FORWARD LENGTH=435;; (*ITAG) Solyc10g085920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64259534-64264315 transcript_region:SL2.40ch10:64259534..64264315- go_terms:GO:0044237,GO:0008152 functional_description:"Bifunctional polymyxin resistance protein ArnA (AHRD V1 **-- ARNA_KLEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00018742g0012.1 protein AED:0.24 eAED:0.24 QI:0|0.2|0.33|0.83|0.4|0.5|6|309|318; (*ITAG) Solyc12g007180.1.1 (e_value=7e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1616773-1625594 transcript_region:SL2.40ch12:1616773..1625594- functional_description:"Tesmin/TSO1-like CXC domain-containing protein (AHRD V1 *--- Q54TZ5_DICDI); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; NbS00018742g0016.1 protein AED:0.31 eAED:0.49 QI:0|0.5|0|1|1|0.6|5|0|261; (*GB) gi|224119800|ref|XP_002331164.1| (e_value=7e-66) predicted protein [Populus trichocarpa];; (*TAIR) AT4G29000.1 (e_value=1e-52) | Symbols: | Tesmin/TSO1-like CXC domain-containing protein | chr4:14293957-14296602 FORWARD LENGTH=603;; (*ITAG) Solyc07g020710.2.1 (e_value=7e-82) genomic_reference:SL2.40ch07 gene_region:13283922-13300852 transcript_region:SL2.40ch07:13283922..13300852+ go_terms:GO:0005515,GO:0003700 functional_description:"Tesmin/TSO1-like CXC domain-containing protein (AHRD V1 *--- Q54TZ5_DICDI); contains Interpro domain(s) IPR005172 Tesmin/TSO1-like, CXC "; GO:0005515,GO:0003700 NbS00018742g0017.1 protein AED:0.18 eAED:0.18 QI:230|1|0.94|1|0.81|0.82|17|341|749; (*GB) gi|224142159|ref|XP_002324426.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPI6|AIM1_ARATH (e_value=0.0) Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1;; (*TAIR) AT4G29010.1 (e_value=0.0) | Symbols: AIM1 | Enoyl-CoA hydratase/isomerase family | chr4:14297312-14302016 REVERSE LENGTH=721;; (*ITAG) Solyc07g019670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:12707106-12716182 transcript_region:SL2.40ch07:12707106..12716182+ go_terms:GO:0004300 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- FADJ_ECOHS); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0004300 NbS00002076g0009.1 protein AED:0.17 eAED:0.17 QI:0|1|0.95|1|0.95|0.95|22|0|1273; (*GB) gi|75321780|sp|Q5W274.1|PDR3_TOBAC (e_value=0.0) RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3;; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=0.0) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1;; (*TAIR) AT3G53480.1 (e_value=0.0) | Symbols: PIS1, PDR9, ATPDR9, ABCG37 | pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450;; (*ITAG) Solyc01g101070.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82682230-82692010 transcript_region:SL2.40ch01:82682230..82692010- go_terms:GO:0042626 functional_description:"ABC transporter G family member 37 (AHRD V1 ***- AB37G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00005361g0001.1 protein AED:0.07 eAED:0.07 QI:743|1|0.66|1|0|0|3|0|306; (*GB) gi|255569812|ref|XP_002525870.1| (e_value=4e-105) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=1e-35) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT1G14440.2 (e_value=8e-68) | Symbols: AtHB31, HB31, ZHD4 | homeobox protein 31 | chr1:4939076-4940014 REVERSE LENGTH=312;; (*ITAG) Solyc01g102980.2.1 (e_value=6e-122) genomic_reference:SL2.40ch01 gene_region:83400300-83402189 transcript_region:SL2.40ch01:83400300..83402189+ go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbS00015683g0002.1 protein AED:0.07 eAED:0.07 QI:0|1|0.33|1|1|1|3|0|240; (*GB) gi|4887018|gb|AAD32145.1|AF123507_1 (e_value=8e-117) Nt-iaa4.5 deduced protein [Nicotiana tabacum];; (*SWP) sp|O24542|AX22D_VIGRR (e_value=9e-87) Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1;; (*TAIR) AT5G43700.1 (e_value=1e-78) | Symbols: ATAUX2-11, IAA4 | AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186;; (*ITAG) Solyc09g065850.2.1 (e_value=1e-89) genomic_reference:SL2.40ch09 gene_region:59713336-59714551 transcript_region:SL2.40ch09:59713336..59714551- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00015683g0005.1 protein AED:0.32 eAED:0.32 QI:357|0.4|0.83|0.83|0.2|0.33|6|157|117; (*GB) gi|297850240|ref|XP_002893001.1| (e_value=7e-15) hypothetical protein ARALYDRAFT_335100 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G18410.1 (e_value=2e-17) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:6336528-6342460 REVERSE LENGTH=1140;; (*ITAG) Solyc12g036810.1.1 (e_value=5e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:32899136-32904401 transcript_region:SL2.40ch12:32899136..32904401+ go_terms:GO:0007018 functional_description:"Kinesin-like protein 73641-79546 (AHRD V1 *-*- Q9CAC9_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00056619g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0.5|1|0|0.5|2|61|653; (*GB) gi|356567976|ref|XP_003552190.1| (e_value=0.0) PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc09g011070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:4400701-4402746 transcript_region:SL2.40ch09:4400701..4402746- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00006561g0110.1 protein AED:0.20 eAED:0.20 QI:8|0.57|0.62|1|0.85|0.75|8|0|401 NbS00006561g0103.1 protein AED:0.19 eAED:0.19 QI:0|0|0.5|1|0|0.5|2|176|177 NbS00006561g0111.1 protein AED:0.35 eAED:0.40 QI:0|0|0|1|0|0|2|0|106 NbS00040001g0003.1 protein AED:0.06 eAED:0.06 QI:189|1|1|1|0|0.33|3|443|149; (*GB) gi|4337001|gb|AAD18030.1| (e_value=6e-92) Tsi1-interacting protein TSIP1 [Nicotiana tabacum];; (*TAIR) AT2G24860.1 (e_value=4e-54) | Symbols: | DnaJ/Hsp40 cysteine-rich domain superfamily protein | chr2:10587118-10588240 REVERSE LENGTH=144;; (*ITAG) Solyc08g006620.2.1 (e_value=3e-74) genomic_reference:SL2.40ch08 gene_region:1216067-1220196 transcript_region:SL2.40ch08:1216067..1220196+ go_terms:GO:0006457 functional_description:"Tsi1-interacting protein TSIP1 (AHRD V1 **-- Q9ZPJ0_TOBAC); contains Interpro domain(s) IPR001305 Heat shock protein DnaJ, cysteine-rich region "; GO:0006457 NbS00001458g0004.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|112; (*GB) gi|18499|emb|CAA38374.1| (e_value=3e-57) late embryogenesis abundant protein [Gossypium hirsutum];; (*SWP) sp|Q02400|LE193_HORVU (e_value=2e-52) Late embryogenesis abundant protein B19.3 OS=Hordeum vulgare GN=B19.3 PE=2 SV=1;; (*TAIR) AT3G51810.1 (e_value=1e-46) | Symbols: ATEM1, GEA1, AT3, EM1 | Stress induced protein | chr3:19214818-19215461 FORWARD LENGTH=152;; (*ITAG) Solyc09g014750.1.1 (e_value=7e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:6840875-6841180 transcript_region:SL2.40ch09:6840875..6841180+ functional_description:"Late embryogenesis abundant protein (AHRD V1 ***- A4VBF1_9FABA); contains Interpro domain(s) IPR000389 Small hydrophilic plant seed protein "; NbS00012926g0006.1 protein AED:0.22 eAED:0.22 QI:24|1|1|1|1|1|3|299|624; (*GB) gi|224064968|ref|XP_002301615.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G05090.1 (e_value=7e-46) | Symbols: | dentin sialophosphoprotein-related | chr1:1463202-1465622 FORWARD LENGTH=706;; (*ITAG) Solyc07g049750.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57417080-57421894 transcript_region:SL2.40ch07:57417080..57421894+ functional_description:"GD3A (Fragment) (AHRD V1 *-*- Q6S477_ARATH)"; NbS00036996g0005.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0.2|0.6|1|1|5|0|237; (*GB) gi|584864|sp|P37121.1|C76A1_SOLME (e_value=2e-83) RecName: Full=Cytochrome P450 76A1; AltName: Full=CYPLXXVIA1; AltName: Full=Cytochrome P-450EG8;; (*SWP) sp|P37121|C76A1_SOLME (e_value=6e-85) Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1;; (*TAIR) AT3G52970.1 (e_value=1e-37) | Symbols: CYP76G1 | cytochrome P450, family 76, subfamily G, polypeptide 1 | chr3:19641400-19643259 REVERSE LENGTH=516;; (*ITAG) Solyc10g083700.2.1 (e_value=2e-82) genomic_reference:SL2.40ch10 gene_region:62792950-62794747 transcript_region:SL2.40ch10:62792950..62794747- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00036996g0004.1 protein AED:0.37 eAED:0.58 QI:0|0|0|1|0|0|2|0|105; (*GB) gi|584865|sp|P37122.1|C76A2_SOLME (e_value=5e-14) RecName: Full=Cytochrome P450 76A2; AltName: Full=CYPLXXVIA2; AltName: Full=Cytochrome P-450EG7;; (*SWP) sp|P37122|C76A2_SOLME (e_value=1e-15) Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1; NbS00040103g0006.1 protein AED:0.06 eAED:0.06 QI:333|0.5|0.33|1|0.5|0.33|3|0|192; (*GB) gi|356550594|ref|XP_003543670.1| (e_value=8e-78) PREDICTED: uncharacterized protein LOC100780674 [Glycine max];; (*TAIR) AT4G32460.2 (e_value=2e-74) | Symbols: | Protein of unknown function, DUF642 | chr4:15663036-15664859 REVERSE LENGTH=365;; (*ITAG) Solyc06g067910.2.1 (e_value=3e-112) genomic_reference:SL2.40ch06 gene_region:38479523-38482938 transcript_region:SL2.40ch06:38479523..38482938- functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00010037g0002.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|86; (*GB) gi|297740917|emb|CBI31099.3| (e_value=4e-52) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=7e-48) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=4e-46) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=6e-50) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00021781g0001.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|68; (*GB) gi|57013989|ref|YP_173461.1| (e_value=8e-35) hypothetical protein NitaMp123 [Nicotiana tabacum]; NbS00000631g0009.1 protein AED:0.08 eAED:0.08 QI:0|0.83|0.71|0.85|1|1|7|0|252; (*GB) gi|356549835|ref|XP_003543296.1| (e_value=9e-132) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*SWP) sp|Q9HA65|TBC17_HUMAN (e_value=7e-19) TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=2 SV=2;; (*TAIR) AT5G54780.1 (e_value=1e-116) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:22248696-22251692 REVERSE LENGTH=432;; (*ITAG) Solyc12g005220.1.1 (e_value=9e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:141022-146306 transcript_region:SL2.40ch12:141022..146306+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00000631g0010.1 protein AED:0.18 eAED:0.18 QI:0|1|0.6|1|0.75|0.6|5|0|339; (*GB) gi|359487917|ref|XP_002271452.2| (e_value=7e-157) PREDICTED: acyltransferase-like protein At1g54570, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=4e-145) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1;; (*TAIR) AT1G54570.1 (e_value=3e-146) | Symbols: | Esterase/lipase/thioesterase family protein | chr1:20380649-20384953 REVERSE LENGTH=704;; (*ITAG) Solyc01g098110.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80465152-80480438 transcript_region:SL2.40ch01:80465152..80480438+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0003824 NbS00030272g0010.1 protein AED:0.23 eAED:0.23 QI:154|0.62|0.66|1|0.75|0.77|9|42|456; (*GB) gi|225445326|ref|XP_002281488.1| (e_value=0.0) PREDICTED: tRNA (guanine-N(1)-)-methyltransferase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|F6HH45|TRM52_VITVI (e_value=3e-180) tRNA (guanine(37)-N1)-methyltransferase 2 OS=Vitis vinifera GN=VIT_11s0016g04350 PE=3 SV=1;; (*TAIR) AT3G56120.1 (e_value=7e-163) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:20823243-20826357 FORWARD LENGTH=468;; (*ITAG) Solyc05g006200.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:868417-875988 transcript_region:SL2.40ch05:868417..875988+ go_terms:GO:0016423,GO:0042802 functional_description:"tRNA (Guanine-N(1)-)-methyltransferase (AHRD V1 *-** A8N339_COPC7); contains Interpro domain(s) IPR003402 Protein of unknown function Met10 "; GO:0016423,GO:0042802 NbS00030272g0011.1 protein AED:0.33 eAED:0.42 QI:0|0|0|0.8|0|0.4|5|0|380; (*GB) gi|297738868|emb|CBI28113.3| (e_value=1e-80) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M088|E135_ARATH (e_value=6e-53) Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1;; (*TAIR) AT3G24330.1 (e_value=2e-71) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=500;; (*ITAG) Solyc05g006210.2.1 (e_value=4e-100) genomic_reference:SL2.40ch05 gene_region:876367-878630 transcript_region:SL2.40ch05:876367..878630+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00030272g0009.1 protein AED:0.38 eAED:0.48 QI:28|1|0.5|1|1|0.5|2|0|227; (*ITAG) Solyc05g018490.2.1 (e_value=2e-29) genomic_reference:SL2.40ch05 gene_region:22005205-22009758 transcript_region:SL2.40ch05:22005205..22009758- functional_description:"Early fruit mRNA (AHRD V1 *--- B6TAC1_MAIZE)"; NbS00030780g0004.1 protein AED:0.42 eAED:0.65 QI:0|0|0|1|0|0|2|0|107 NbS00015006g0112.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|1|2|0|139 NbS00015006g0113.1 protein AED:0.48 eAED:0.48 QI:42|1|0.5|1|0|0|2|0|35 NbS00005077g0001.1 protein AED:0.20 eAED:0.20 QI:263|1|1|1|1|1|4|204|219; (*GB) gi|225444633|ref|XP_002275936.1| (e_value=1e-105) PREDICTED: peroxiredoxin Q, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6QPJ6|PRXQ_POPJC (e_value=6e-107) Peroxiredoxin Q, chloroplastic OS=Populus jackii GN=PRXQ PE=1 SV=1;; (*TAIR) AT3G26060.1 (e_value=1e-95) | Symbols: ATPRX Q | Thioredoxin superfamily protein | chr3:9524807-9526123 FORWARD LENGTH=216;; (*ITAG) Solyc07g042440.2.1 (e_value=9e-121) genomic_reference:SL2.40ch07 gene_region:52904495-52907327 transcript_region:SL2.40ch07:52904495..52907327- go_terms:GO:0008379 functional_description:"Alkyl hydroperoxide reductase/Thiol specific antioxidant family protein (AHRD V1 **-- B0C2Q1_ACAM1); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0008379 NbS00042815g0003.1 protein AED:0.38 eAED:0.38 QI:0|1|0|1|1|1|2|0|163; (*GB) gi|297740034|emb|CBI30216.3| (e_value=2e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q96SB4|SRPK1_HUMAN (e_value=6e-32) SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2;; (*TAIR) AT3G53030.1 (e_value=2e-70) | Symbols: SRPK4 | ser/arg-rich protein kinase 4 | chr3:19662412-19664362 FORWARD LENGTH=529;; (*ITAG) Solyc09g008790.2.1 (e_value=2e-90) genomic_reference:SL2.40ch09 gene_region:2214074-2219739 transcript_region:SL2.40ch09:2214074..2219739- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U1C3_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00001604g0013.1 protein AED:0.18 eAED:0.18 QI:0|0.87|0.77|1|1|0.88|9|0|867; (*GB) gi|1117793|gb|AAD09202.1| (e_value=0.0) lipoxygenase [Solanum tuberosum];; (*SWP) sp|Q43191|LOX15_SOLTU (e_value=0.0) Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum GN=LOX1.5 PE=2 SV=1;; (*TAIR) AT3G22400.1 (e_value=0.0) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886;; (*ITAG) Solyc09g075860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63006026-63010695 transcript_region:SL2.40ch09:63006026..63010695+ go_terms:GO:0016165 functional_description:"Lipoxygenase (AHRD V1 **** Q41430_SOLTU); contains Interpro domain(s) IPR001246 Lipoxygenase, plant "; GO:0016165 NbS00001604g0006.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.5|1|1|2|0|125; (*GB) gi|407769|dbj|BAA02871.1| (e_value=4e-63) PSI-D1 precursor [Nicotiana sylvestris];; (*SWP) sp|P32869|PSAD_CUCSA (e_value=7e-62) Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1;; (*TAIR) AT1G03130.1 (e_value=6e-60) | Symbols: PSAD-2 | photosystem I subunit D-2 | chr1:753528-754142 REVERSE LENGTH=204;; (*ITAG) Solyc06g054260.1.1 (e_value=3e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33565231-33565857 transcript_region:SL2.40ch06:33565231..33565857- go_terms:GO:0009538 functional_description:"Photosystem I reaction center subunit II (AHRD V1 ***- B4FAW3_MAIZE); contains Interpro domain(s) IPR003685 Photosystem I protein PsaD "; GO:0009538 NbS00001604g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.85|0.87|0.87|0.85|0.87|8|272|247; (*GB) gi|147800883|emb|CAN62374.1| (e_value=1e-129) hypothetical protein VITISV_036478 [Vitis vinifera];; (*SWP) sp|Q09893|YAI5_SCHPO (e_value=1e-15) Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=2 SV=1;; (*TAIR) AT2G32150.1 (e_value=1e-111) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:13659095-13660531 FORWARD LENGTH=263;; (*ITAG) Solyc09g075890.2.1 (e_value=8e-158) genomic_reference:SL2.40ch09 gene_region:63027202-63029749 transcript_region:SL2.40ch09:63027202..63029749- go_terms:GO:0047405,GO:0008252 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 **** B4WF69_9CAUL); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0047405,GO:0008252 NbS00049970g0008.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.6|1|0.75|1|5|0|365; (*GB) gi|225443227|ref|XP_002270610.1| (e_value=7e-174) PREDICTED: probable serine incorporator [Vitis vinifera];; (*SWP) sp|A7S4N4|SERIC_NEMVE (e_value=3e-30) Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1;; (*TAIR) AT1G16180.2 (e_value=2e-166) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr1:5540905-5542670 FORWARD LENGTH=412;; (*ITAG) Solyc03g117770.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60854347-60859485 transcript_region:SL2.40ch03:60854347..60859485+ go_terms:GO:0005515,GO:0015194 functional_description:"Serine incorporator 1 (AHRD V1 **-* B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0005515,GO:0015194 NbS00049970g0007.1 protein AED:0.36 eAED:0.36 QI:202|0.90|0.91|1|0.81|0.83|12|0|367; (*GB) gi|255641364|gb|ACU20959.1| (e_value=2e-169) unknown [Glycine max];; (*SWP) sp|Q84L33|RD23A_ARATH (e_value=3e-163) Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3;; (*TAIR) AT1G79650.2 (e_value=2e-165) | Symbols: RAD23, RAD23B | Rad23 UV excision repair protein family | chr1:29972406-29975132 REVERSE LENGTH=365;; (*ITAG) Solyc03g117780.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60859826-60864595 transcript_region:SL2.40ch03:60859826..60864595- go_terms:GO:0031593 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593 NbS00047157g0006.1 protein AED:0.43 eAED:0.79 QI:0|0.5|0|1|0|0|3|0|118 NbS00047157g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.87|0.77|1|0.75|0.66|9|553|498; (*GB) gi|45260636|emb|CAD27417.1| (e_value=0.0) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|Q42569|C90A1_ARATH (e_value=0.0) Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1;; (*TAIR) AT5G05690.1 (e_value=0.0) | Symbols: CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1 | Cytochrome P450 superfamily protein | chr5:1702907-1706705 REVERSE LENGTH=472;; (*ITAG) Solyc06g051750.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:31793440-31800469 transcript_region:SL2.40ch06:31793440..31800469- go_terms:GO:0019825,GO:0010295 functional_description:"Cytochrome P450"; GO:0019825,GO:0010295 NbS00007532g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|225458723|ref|XP_002283036.1| (e_value=2e-78) PREDICTED: probable carbohydrate esterase At4g34215-like [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=1e-62) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=1e-71) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc04g074110.2.1 (e_value=1e-85) genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00023730g0005.1 protein AED:0.13 eAED:0.13 QI:0|1|1|1|0.5|0.66|3|344|324; (*GB) gi|83283971|gb|ABC01893.1| (e_value=0.0) vernalization independence 3-like protein [Solanum tuberosum];; (*SWP) sp|Q6P5M2|WDR61_DANRE (e_value=4e-73) WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1;; (*TAIR) AT4G29830.1 (e_value=2e-156) | Symbols: VIP3 | Transducin/WD40 repeat-like superfamily protein | chr4:14597728-14599157 FORWARD LENGTH=321;; (*ITAG) Solyc12g009030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2329781-2333073 transcript_region:SL2.40ch12:2329781..2333073+ functional_description:"WD repeat-containing protein 61 (AHRD V1 **-- B5XGQ3_SALSA); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00050602g0005.1 protein AED:0.16 eAED:0.17 QI:0|0.66|0.5|0.75|1|0.75|4|0|243; (*GB) gi|225435070|ref|XP_002284400.1| (e_value=1e-87) PREDICTED: transcription factor MYB59-like [Vitis vinifera];; (*SWP) sp|Q53NK6|MYBA1_ORYSJ (e_value=7e-70) Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1;; (*TAIR) AT3G46130.1 (e_value=1e-70) | Symbols: ATMYB48, ATMYB48-3, MYB48 | myb domain protein 48 | chr3:16945433-16946376 FORWARD LENGTH=256;; (*ITAG) Solyc06g005330.2.1 (e_value=1e-109) genomic_reference:SL2.40ch06 gene_region:351706-352825 transcript_region:SL2.40ch06:351706..352825- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q56UT4_ORYSJ); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00018962g0003.1 protein AED:0.40 eAED:0.40 QI:7|0.66|0.5|1|0.33|0.75|4|8|145; (*GB) gi|90654968|gb|ABD96083.1| (e_value=1e-63) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT5G25360.2 (e_value=2e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). | chr5:8799934-8802333 REVERSE LENGTH=169;; (*ITAG) Solyc06g066050.2.1 (e_value=3e-79) genomic_reference:SL2.40ch06 gene_region:37790193-37796082 transcript_region:SL2.40ch06:37790193..37796082- functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 *--- Q9LW02_ARATH)"; NbS00036219g0003.1 protein AED:0.14 eAED:0.14 QI:124|0|0.5|1|1|1|2|0|154; (*GB) gi|42374789|gb|AAS13438.1| (e_value=5e-61) systemin [Nicotiana attenuata];; (*SWP) sp|Q93WP8|HSYA_TOBAC (e_value=1e-58) Hydroxyproline-rich systemin A OS=Nicotiana tabacum PE=1 SV=1; NbS00007015g0009.1 protein AED:0.19 eAED:0.19 QI:308|1|1|1|0.5|0.6|5|555|238; (*GB) gi|225456737|ref|XP_002268400.1| (e_value=5e-63) PREDICTED: transcription factor bHLH47-like [Vitis vinifera];; (*SWP) sp|Q9SN74|BH047_ARATH (e_value=4e-41) Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1;; (*TAIR) AT3G47640.3 (e_value=3e-42) | Symbols: PYE | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:17568035-17569101 FORWARD LENGTH=240;; (*ITAG) Solyc03g116340.2.1 (e_value=1e-105) genomic_reference:SL2.40ch03 gene_region:59874395-59877786 transcript_region:SL2.40ch03:59874395..59877786+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MK24_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00007015g0012.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.75|0.33|0.5|4|0|452; (*ITAG) Solyc03g112960.1.1 (e_value=3e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:57342811-57343638 transcript_region:SL2.40ch03:57342811..57343638+ functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)"; NbS00023480g0007.1 protein AED:0.36 eAED:0.36 QI:0|1|0.85|1|1|1|7|0|257; (*GB) gi|297836694|ref|XP_002886229.1| (e_value=9e-126) hypothetical protein ARALYDRAFT_900313 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q6DJ87|CC90B_XENTR (e_value=7e-22) Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis GN=ccdc90b PE=2 SV=2;; (*TAIR) AT2G16460.1 (e_value=7e-128) | Symbols: | Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230;; (*ITAG) Solyc10g054320.1.1 (e_value=3e-157) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:50711112-50717005 transcript_region:SL2.40ch10:50711112..50717005- go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00023480g0008.1 protein AED:0.18 eAED:0.18 QI:0|0.88|0.8|1|0.88|0.8|10|0|328; (*GB) gi|1389893|gb|AAB02945.1| (e_value=0.0) squalene synthase [Nicotiana tabacum];; (*SWP) sp|P53800|FDFT_NICBE (e_value=0.0) Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1;; (*TAIR) AT4G34640.1 (e_value=1e-177) | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538489-16541655 FORWARD LENGTH=410;; (*ITAG) Solyc10g054130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50138928-50144839 transcript_region:SL2.40ch10:50138928..50144839+ go_terms:GO:0009058,GO:0016021 functional_description:"Squalene synthase (AHRD V1 ***- Q9XF02_CAPAN); contains Interpro domain(s) IPR006449 Farnesyl-diphosphate farnesyltransferase "; GO:0009058,GO:0016021 NbS00023480g0001.1 protein AED:0.30 eAED:0.37 QI:0|0|0.33|1|1|1|3|0|252; (*GB) gi|356508208|ref|XP_003522851.1| (e_value=3e-95) PREDICTED: zinc finger protein GIS2-like [Glycine max];; (*SWP) sp|O76743|GLH4_CAEEL (e_value=2e-18) ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=2 SV=2;; (*TAIR) AT1G75560.2 (e_value=3e-65) | Symbols: | zinc knuckle (CCHC-type) family protein | chr1:28371420-28372717 REVERSE LENGTH=257;; (*ITAG) Solyc10g054330.1.1 (e_value=4e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:50729498-50732695 transcript_region:SL2.40ch10:50729498..50732695+ go_terms:GO:0008270 functional_description:"Cellular nucleic acid-binding protein (AHRD V1 **-- B6T3W5_MAIZE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00040856g0007.1 protein AED:0.08 eAED:0.08 QI:462|0.85|0.87|1|0.85|1|8|284|116; (*GB) gi|380863048|gb|AFF18817.1| (e_value=2e-50) glutathione S-transferase, partial [Dimocarpus longan];; (*SWP) sp|Q9LZ06|GSTL3_ARATH (e_value=2e-45) Glutathione S-transferase L3 OS=Arabidopsis thaliana GN=GSTL3 PE=2 SV=1;; (*TAIR) AT5G02790.1 (e_value=1e-46) | Symbols: GSTL3 | Glutathione S-transferase family protein | chr5:632877-634858 FORWARD LENGTH=235;; (*ITAG) Solyc10g084400.1.1 (e_value=2e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63281886-63284225 transcript_region:SL2.40ch10:63281886..63284225- functional_description:"Glutathione S-transferase (AHRD V1 ***- Q76KW1_PEA); contains Interpro domain(s) IPR017933 Glutathione S-transferase/chloride channel, C-terminal "; NbS00040856g0011.1 protein AED:0.33 eAED:0.33 QI:0|1|0.77|1|0.62|0.55|9|465|288; (*GB) gi|198400321|gb|ACH87169.1| (e_value=2e-123) MYB transcription factor [Camellia sinensis];; (*SWP) sp|Q6R0H0|ASG4_ARATH (e_value=6e-68) Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1;; (*TAIR) AT3G09600.1 (e_value=8e-95) | Symbols: | Homeodomain-like superfamily protein | chr3:2946459-2948270 FORWARD LENGTH=298;; (*ITAG) Solyc10g084370.1.1 (e_value=1e-152) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63264581-63268780 transcript_region:SL2.40ch10:63264581..63268780- go_terms:GO:0003677 functional_description:"MYB transcription factor (Fragment) (AHRD V1 **-- A1DR87_CATRO); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00040856g0002.1 protein AED:0.14 eAED:0.14 QI:387|0.66|0.85|0.85|0.66|0.71|7|325|442; (*GB) gi|225439779|ref|XP_002275978.1| (e_value=2e-126) PREDICTED: WRKY transcription factor 44-like [Vitis vinifera];; (*SWP) sp|Q9ZUU0|WRK44_ARATH (e_value=8e-57) WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2;; (*TAIR) AT2G37260.1 (e_value=6e-58) | Symbols: TTG2, ATWRKY44, WRKY44, DSL1 | WRKY family transcription factor family protein | chr2:15645277-15646792 FORWARD LENGTH=429;; (*ITAG) Solyc10g084380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63276460-63279065 transcript_region:SL2.40ch10:63276460..63279065+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 42 (Fragment) (AHRD V1 **-- B2KJ82_HORVD); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010939g0020.1 protein AED:0.07 eAED:0.07 QI:10|0.5|0.8|1|1|1|5|7|565; (*GB) gi|81238594|gb|ABB60055.1| (e_value=3e-174) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=3e-114) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=2e-107) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00010939g0012.1 protein AED:0.03 eAED:0.05 QI:0|1|0.33|1|1|1|3|0|524; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=0.0) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=0.0) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=3e-93) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g072560.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00010939g0021.1 protein AED:0.06 eAED:0.06 QI:11|1|1|1|1|1|4|7|475; (*GB) gi|81238594|gb|ABB60055.1| (e_value=2e-180) 11S globulin precursor isoform 4 [Sesamum indicum];; (*SWP) sp|P14614|GLUB4_ORYSJ (e_value=1e-115) Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=2e-110) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g025210.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00010939g0022.1 protein AED:0.07 eAED:0.07 QI:200|0.66|0.75|1|1|1|4|53|414; (*GB) gi|225438121|ref|XP_002273072.1| (e_value=1e-139) PREDICTED: patellin-4 [Vitis vinifera];; (*SWP) sp|Q94C59|PATL4_ARATH (e_value=7e-95) Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2;; (*TAIR) AT1G30690.2 (e_value=5e-96) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:10888284-10890085 FORWARD LENGTH=540;; (*ITAG) Solyc09g025230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:19259914-19261921 transcript_region:SL2.40ch09:19259914..19261921- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C6HEF9_AJECH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00010939g0023.1 protein AED:0.17 eAED:0.17 QI:0|0.94|0.88|1|0.88|0.94|18|343|1248; (*GB) gi|255582489|ref|XP_002532030.1| (e_value=0.0) Structural maintenance of chromosome 1 protein, putative [Ricinus communis];; (*SWP) sp|Q9CU62|SMC1A_MOUSE (e_value=0.0) Structural maintenance of chromosomes protein 1A OS=Mus musculus GN=Smc1a PE=1 SV=4;; (*TAIR) AT3G54670.3 (e_value=0.0) | Symbols: TTN8 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1239;; (*ITAG) Solyc06g083870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00010939g0007.1 protein AED:0.32 eAED:0.38 QI:0|0.5|0|1|1|1|3|0|180; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=2e-69) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=6e-71) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT5G44120.3 (e_value=1e-36) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc09g072560.2.1 (e_value=2e-82) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00010939g0005.1 protein AED:0.42 eAED:0.42 QI:0|-1|0|1|-1|1|1|0|91; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=2e-37) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=6e-39) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT4G28520.3 (e_value=9e-17) | Symbols: CRU3, CRC | cruciferin 3 | chr4:14087596-14089617 FORWARD LENGTH=453;; (*ITAG) Solyc09g072560.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00010939g0006.1 protein AED:0.41 eAED:0.46 QI:0|1|0|1|1|1|2|0|168; (*GB) gi|75315270|sp|Q9XHP0.1|11S2_SESIN (e_value=1e-54) RecName: Full=11S globulin seed storage protein 2; AltName: Full=11S globulin seed storage protein II; AltName: Full=Alpha-globulin; Contains: RecName: Full=11S globulin seed storage protein 2 acidic chain; AltName: Full=11S globulin seed storage protein II acidic chain; Contains: RecName: Full=11S globulin seed storage protein 2 basic chain; AltName: Full=11S globulin seed storage protein II basic chain; Flags: Precursor;; (*SWP) sp|Q9XHP0|11S2_SESIN (e_value=4e-56) 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1;; (*TAIR) AT1G03890.1 (e_value=2e-27) | Symbols: | RmlC-like cupins superfamily protein | chr1:989250-990908 FORWARD LENGTH=451;; (*ITAG) Solyc09g072560.2.1 (e_value=4e-72) genomic_reference:SL2.40ch09 gene_region:60593208-60595291 transcript_region:SL2.40ch09:60593208..60595291- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00027611g0003.1 protein AED:0.27 eAED:0.27 QI:0|0.83|0.85|1|1|1|7|265|286; (*GB) gi|147820884|emb|CAN60895.1| (e_value=1e-129) hypothetical protein VITISV_023239 [Vitis vinifera];; (*SWP) sp|Q1LXS2|PSMG2_DANRE (e_value=7e-26) Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1;; (*TAIR) AT3G18940.1 (e_value=1e-119) | Symbols: | clast3-related | chr3:6527081-6529050 REVERSE LENGTH=281;; (*ITAG) Solyc01g109130.2.1 (e_value=2e-177) genomic_reference:SL2.40ch01 gene_region:87935341-87941166 transcript_region:SL2.40ch01:87935341..87941166+ go_terms:GO:0005515 functional_description:"Proteasome assembly chaperone 2 (AHRD V1 ***- C1BZ15_ESOLU); contains Interpro domain(s) IPR016562 20S proteasome assembly chaperone 2, subgroup "; GO:0005515 NbS00046532g0005.1 protein AED:0.23 eAED:0.23 QI:236|1|1|1|1|1|10|251|775; (*GB) gi|224116492|ref|XP_002317314.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O65351|SUBL_ARATH (e_value=0.0) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G45650.1 (e_value=0.0) | Symbols: | subtilase family protein | chr5:18513520-18518790 REVERSE LENGTH=791;; (*ITAG) Solyc02g071580.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:35553819-35559281 transcript_region:SL2.40ch02:35553819..35559281- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9FK77_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00036405g0001.1 protein AED:0.33 eAED:0.33 QI:0|0.66|0.25|1|1|1|4|0|317; (*GB) gi|75221017|sp|Q40593.1|VDE_TOBAC (e_value=0.0) RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40593|VDE_TOBAC (e_value=0.0) Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1;; (*TAIR) AT1G08550.2 (e_value=2e-142) | Symbols: NPQ1, AVDE1 | non-photochemical quenching 1 | chr1:2707462-2709387 FORWARD LENGTH=462;; (*ITAG) Solyc04g050930.2.1 (e_value=2e-177) genomic_reference:SL2.40ch04 gene_region:48132067-48135623 transcript_region:SL2.40ch04:48132067..48135623- go_terms:GO:0046422 functional_description:"Violaxanthin de-epoxidase"; GO:0046422 NbS00015734g0004.1 protein AED:0.16 eAED:0.16 QI:37|1|1|1|1|1|5|581|570; (*GB) gi|297816978|ref|XP_002876372.1| (e_value=1e-175) SET domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G56570.1 (e_value=9e-176) | Symbols: | SET domain-containing protein | chr3:20958660-20961137 FORWARD LENGTH=531; NbS00015734g0114.1 protein AED:0.34 eAED:0.34 QI:0|0.8|0.83|1|1|0.83|6|483|159 NbS00015734g0113.1 protein AED:0.13 eAED:0.13 QI:67|1|0.75|1|1|1|4|0|328 NbS00015734g0112.1 protein AED:0.35 eAED:0.37 QI:0|0.69|0.71|1|0.38|0.42|14|0|577 NbS00015734g0221.1 protein AED:0.19 eAED:0.19 QI:0|0.63|0.5|0.91|1|1|12|0|379 NbS00015734g0207.1 protein AED:0.34 eAED:0.81 QI:0|0|0|1|1|1|2|0|380 NbS00015734g0222.1 protein AED:0.11 eAED:0.12 QI:1214|1|0.90|1|1|1|11|381|1138 NbS00055418g0001.1 protein AED:0.15 eAED:0.15 QI:0|0|0|0.5|1|1|2|0|149; (*GB) gi|346466069|gb|AEO32879.1| (e_value=1e-104) hypothetical protein [Amblyomma maculatum];; (*SWP) sp|P62201|CALM_LILLO (e_value=2e-105) Calmodulin OS=Lilium longiflorum PE=2 SV=2;; (*TAIR) AT3G43810.1 (e_value=2e-106) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149;; (*ITAG) Solyc10g081170.1.1 (e_value=1e-106) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61626964-61628347 transcript_region:SL2.40ch10:61626964..61628347- go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00055418g0004.1 protein AED:0.29 eAED:0.29 QI:402|1|1|1|0.83|0.71|7|238|267; (*GB) gi|224089873|ref|XP_002308845.1| (e_value=2e-146) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FF66|UBC22_ARATH (e_value=7e-126) Ubiquitin-conjugating enzyme E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1;; (*TAIR) AT5G05080.2 (e_value=5e-127) | Symbols: UBC22, ATUBC22 | ubiquitin-conjugating enzyme 22 | chr5:1498727-1499972 REVERSE LENGTH=251;; (*ITAG) Solyc10g081160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61623908-61626036 transcript_region:SL2.40ch10:61623908..61626036+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 S (AHRD V1 ***- UBE2S_XENTR); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbC25252651g0002.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|293; (*GB) gi|389607304|dbj|BAM17523.1| (e_value=2e-144) N' tobamovirus resistance protein, partial [Nicotiana tabacum];; (*SWP) sp|Q9LRR4|R13L1_ARATH (e_value=1e-48) Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1;; (*TAIR) AT3G14470.1 (e_value=1e-49) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc11g069990.1.1 (e_value=6e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51661763-51664081 transcript_region:SL2.40ch11:51661763..51664081- go_terms:GO:0005515 functional_description:"Nbs-lrr, resistance protein"; GO:0005515 NbS00028851g0004.1 protein AED:0.40 eAED:0.59 QI:193|0|0.33|1|0|0.33|3|0|56; (*GB) gi|2462736|gb|AAB71955.1| (e_value=4e-20) putative ADP-ribolylation factor [Arabidopsis thaliana];; (*SWP) sp|Q06396|ARF1_ORYSJ (e_value=4e-21) ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3;; (*TAIR) AT1G10630.1 (e_value=3e-22) | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor A1F | chr1:3513189-3514230 REVERSE LENGTH=181;; (*ITAG) Solyc04g025560.2.1 (e_value=6e-22) genomic_reference:SL2.40ch04 gene_region:21626846-21631497 transcript_region:SL2.40ch04:21626846..21631497- go_terms:GO:0005525 functional_description:"ADP-ribosylation factor (AHRD V1 *-*- D7KLG4_ARALY); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525 NbS00018213g0005.1 protein AED:0.26 eAED:0.28 QI:0|0|0|1|1|0.66|3|0|219; (*GB) gi|359482910|ref|XP_003632858.1| (e_value=1e-85) PREDICTED: auxin-responsive protein IAA27-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZSY8|IAA27_ARATH (e_value=2e-62) Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1;; (*TAIR) AT4G29080.1 (e_value=1e-63) | Symbols: PAP2, IAA27 | phytochrome-associated protein 2 | chr4:14323665-14325213 REVERSE LENGTH=305;; (*ITAG) Solyc03g120500.2.1 (e_value=7e-83) genomic_reference:SL2.40ch03 gene_region:62930712-62932827 transcript_region:SL2.40ch03:62930712..62932827- go_terms:GO:0005515,GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0005515,GO:0003700 NbS00021506g0010.1 protein AED:0.09 eAED:0.09 QI:20|1|0.66|1|0.5|0.33|3|542|33 NbS00021506g0014.1 protein AED:0.16 eAED:0.21 QI:18|1|0.66|1|0|0.33|3|0|114; (*GB) gi|255580984|ref|XP_002531310.1| (e_value=2e-57) tRNA-specific adenosine deaminase subunit TAD2, putative [Ricinus communis];; (*SWP) sp|Q5E9J7|ADAT2_BOVIN (e_value=9e-29) tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2 SV=1;; (*TAIR) AT1G48175.1 (e_value=4e-54) | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase family protein | chr1:17790957-17792066 FORWARD LENGTH=182;; (*ITAG) Solyc07g008650.2.1 (e_value=1e-74) genomic_reference:SL2.40ch07 gene_region:3585311-3592520 transcript_region:SL2.40ch07:3585311..3592520+ go_terms:GO:0008251 functional_description:"tRNA-specific adenosine deaminase (AHRD V1 **** B6T9V4_MAIZE); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0008251 NbS00021506g0012.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0.2|0.8|0.75|0.6|5|0|868; (*GB) gi|224066321|ref|XP_002302082.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT3G63430.1 (e_value=1e-60) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74160.1); Has 135 Blast hits to 119 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:23420414-23422201 FORWARD LENGTH=540;; (*ITAG) Solyc07g008670.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3613044-3616083 transcript_region:SL2.40ch07:3613044..3616083- functional_description:"AT1G74160 protein (Fragment) (AHRD V1 *-*- B9DHP4_ARATH)"; NbS00038219g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|318; (*GB) gi|255543106|ref|XP_002512616.1| (e_value=8e-108) interferon-induced GTP-binding protein mx, putative [Ricinus communis];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=5e-86) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=4e-87) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc04g072030.1.1 (e_value=5e-176) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:56696025-56698052 transcript_region:SL2.40ch04:56696025..56698052+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00001814g0007.1 protein AED:0.37 eAED:0.37 QI:0|0.57|0.37|0.87|0.42|0.5|8|0|254; (*GB) gi|357465213|ref|XP_003602888.1| (e_value=3e-15) GATA transcription factor [Medicago truncatula];; (*TAIR) AT3G21175.2 (e_value=2e-13) | Symbols: ZML1, GATA24 | ZIM-like 1 | chr3:7422832-7424598 FORWARD LENGTH=295;; (*ITAG) Solyc04g076530.2.1 (e_value=5e-37) genomic_reference:SL2.40ch04 gene_region:59008668-59018815 transcript_region:SL2.40ch04:59008668..59018815+ go_terms:GO:0006355 functional_description:"GATA transcription factor 25 (AHRD V1 *--- B6TFI9_MAIZE); contains Interpro domain(s) IPR010402 CCT domain "; GO:0006355 NbS00007938g0011.1 protein AED:0.32 eAED:0.32 QI:283|0.88|0.9|1|0.77|0.8|10|0|319; (*GB) gi|357521303|ref|XP_003630940.1| (e_value=0.0) Ubiquitin fusion degradation protein [Medicago truncatula];; (*SWP) sp|Q9ES53|UFD1_RAT (e_value=2e-77) Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1;; (*TAIR) AT2G21270.2 (e_value=4e-166) | Symbols: UFD1 | ubiquitin fusion degradation 1 | chr2:9108126-9110012 FORWARD LENGTH=319;; (*ITAG) Solyc01g110410.2.1 (e_value=3e-166) genomic_reference:SL2.40ch01 gene_region:88875329-88881371 transcript_region:SL2.40ch01:88875329..88881371- go_terms:GO:0005515 functional_description:"Ubiquitin fusion-degradation protein-like (AHRD V1 ***- Q307X2_SOLTU); contains Interpro domain(s) IPR004854 Ubiquitin fusion degradation protein UFD1 "; GO:0005515 NbS00007938g0013.1 protein AED:0.22 eAED:0.22 QI:157|0.78|0.73|1|0.78|0.86|15|306|975; (*GB) gi|147775817|emb|CAN75924.1| (e_value=0.0) hypothetical protein VITISV_029516 [Vitis vinifera];; (*SWP) sp|Q54NP8|KIF4_DICDI (e_value=3e-71) Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1;; (*TAIR) AT2G21300.2 (e_value=0.0) | Symbols: | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862;; (*ITAG) Solyc01g110380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88860841-88867416 transcript_region:SL2.40ch01:88860841..88867416+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- Q0WLK7_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00007938g0002.1 protein AED:0.41 eAED:0.42 QI:0|0.8|0.54|1|1|1|11|0|313; (*GB) gi|224105291|ref|XP_002313756.1| (e_value=1e-156) predicted protein [Populus trichocarpa];; (*SWP) sp|P73467|Y1223_SYNY3 (e_value=4e-83) Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1223 PE=3 SV=2;; (*TAIR) AT2G21280.1 (e_value=5e-147) | Symbols: GC1, ATSULA, SULA | NAD(P)-binding Rossmann-fold superfamily protein | chr2:9110502-9112679 REVERSE LENGTH=347;; (*ITAG) Solyc09g091970.2.1 (e_value=6e-159) genomic_reference:SL2.40ch09 gene_region:66512976-66517268 transcript_region:SL2.40ch09:66512976..66517268- go_terms:GO:0005515 functional_description:"NAD-binding domain 4 protein (AHRD V1 **** D5D7M5_ECOKI); contains Interpro domain(s) IPR010099 Sugar nucleotide epimerase YfcH, putative "; GO:0005515 NbS00003328g0016.1 protein AED:0.00 eAED:0.00 QI:95|1|1|1|0|0.5|2|50|95; (*GB) gi|356553883|ref|XP_003545280.1| (e_value=4e-28) PREDICTED: dnaJ homolog subfamily C member 2-like [Glycine max];; (*TAIR) AT4G39250.1 (e_value=5e-29) | Symbols: ATRL1, RSM2, RL1 | RAD-like 1 | chr4:18271457-18271857 REVERSE LENGTH=100;; (*ITAG) Solyc10g080920.1.1 (e_value=5e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61426695-61428430 transcript_region:SL2.40ch10:61426695..61428430+ go_terms:GO:0003677 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 ***- D7KSM0_ARALY); contains Interpro domain(s) IPR017884 SANT, eukarya "; GO:0003677 NbS00003328g0011.1 protein AED:0.45 eAED:0.45 QI:0|0.4|0.16|0.66|1|1|6|0|190; (*GB) gi|145952330|gb|ABP98986.1| (e_value=2e-78) putative ubiquitin associated/TS-N domain-containing protein [Hieracium piloselloides];; (*TAIR) AT3G56740.1 (e_value=2e-79) | Symbols: | Ubiquitin-associated (UBA) protein | chr3:21015631-21017883 FORWARD LENGTH=293;; (*ITAG) Solyc10g080810.1.1 (e_value=4e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61327018-61332143 transcript_region:SL2.40ch10:61327018..61332143+ functional_description:"Ubiquitin-associated /TS-N domain-containing protein (AHRD V1 ***- D7LVJ2_ARALY); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; NbS00003328g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|453; (*GB) gi|124484371|dbj|BAF46296.1| (e_value=0.0) cytochrome P450 [Ipomoea nil];; (*SWP) sp|Q9FMY1|C86B1_ARATH (e_value=1e-120) Cytochrome P450 86B1 OS=Arabidopsis thaliana GN=CYP86B1 PE=2 SV=1;; (*TAIR) AT2G23180.1 (e_value=5e-161) | Symbols: CYP96A1 | cytochrome P450, family 96, subfamily A, polypeptide 1 | chr2:9874953-9876503 FORWARD LENGTH=516;; (*ITAG) Solyc10g080840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61347776-61349305 transcript_region:SL2.40ch10:61347776..61349305- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007231g0004.1 protein AED:0.30 eAED:0.32 QI:183|0.33|0.71|1|0.66|0.85|7|251|393; (*GB) gi|359479082|ref|XP_002272646.2| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100259916 [Vitis vinifera];; (*ITAG) Solyc11g071690.1.1 (e_value=9e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52176483-52180827 transcript_region:SL2.40ch11:52176483..52180827- go_terms:GO:0008270 functional_description:"Cellular nucleic acid binding protein (AHRD V1 *--- Q5QJQ9_MOUSE); contains Interpro domain(s) IPR013084 Zinc finger, CCHC retroviral-type "; GO:0008270 NbS00007843g0002.1 protein AED:0.14 eAED:0.14 QI:0|0.76|0.78|1|0.84|0.85|14|2042|813; (*GB) gi|359489218|ref|XP_002270340.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera];; (*SWP) sp|Q7TP47|HNRPQ_RAT (e_value=3e-34) Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1;; (*TAIR) AT2G44710.1 (e_value=2e-32) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18432902-18436629 FORWARD LENGTH=809;; (*ITAG) Solyc10g062180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:55831367-55835458 transcript_region:SL2.40ch10:55831367..55835458+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C6HE59_AJECH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00007843g0106.1 protein AED:0.20 eAED:0.20 QI:1201|1|0.66|1|1|0.66|3|0|233 NbS00007843g0107.1 protein AED:0.36 eAED:0.40 QI:0|0.44|0.3|1|0.66|0.7|10|0|662 NbS00007843g0201.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|280 NbS00007843g0209.1 protein AED:0.63 eAED:0.63 QI:0|0.75|0.8|0.8|1|1|5|324|274 NbS00044707g0006.1 protein AED:0.08 eAED:0.09 QI:157|0.76|0.81|0.95|0.76|0.68|22|389|2429; (*GB) gi|147788832|emb|CAN77825.1| (e_value=0.0) hypothetical protein VITISV_015458 [Vitis vinifera];; (*SWP) sp|Q8CD54|PIEZ2_MOUSE (e_value=1e-48) Piezo-type mechanosensitive ion channel component 2 OS=Mus musculus GN=Piezo2 PE=2 SV=2;; (*TAIR) AT2G48060.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462;; (*ITAG) Solyc09g074110.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61291740-61320947 transcript_region:SL2.40ch09:61291740..61320947+ functional_description:"AGAP009276-PA (Fragment) (AHRD V1 *--- Q7PVH5_ANOGA)"; NbS00058602g0003.1 protein AED:0.24 eAED:0.24 QI:66|1|0|1|1|1|2|0|69; (*GB) gi|357162484|ref|XP_003579427.1| (e_value=5e-35) PREDICTED: probable serine/threonine-protein kinase abkC-like [Brachypodium distachyon];; (*TAIR) AT1G11390.1 (e_value=3e-36) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc03g006660.2.1 (e_value=5e-43) genomic_reference:SL2.40ch03 gene_region:1233241-1241413 transcript_region:SL2.40ch03:1233241..1241413+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--* ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00009111g0019.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|1|1|3|0|194; (*GB) gi|255577930|ref|XP_002529837.1| (e_value=1e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03982.1 (e_value=5e-16) | Symbols: | PAK-box/P21-Rho-binding family protein | chr1:1022424-1023136 REVERSE LENGTH=177;; (*ITAG) Solyc06g008240.2.1 (e_value=8e-69) genomic_reference:SL2.40ch06 gene_region:2116193-2118881 transcript_region:SL2.40ch06:2116193..2118881- functional_description:"Rop-interactive crib motif-containing protein 3 (AHRD V1 *--- D7KDE9_ARALY); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00009111g0018.1 protein AED:0.12 eAED:0.12 QI:309|1|1|1|0.90|0.83|12|359|437; (*GB) gi|359480030|ref|XP_002272358.2| (e_value=0.0) PREDICTED: TBC1 domain family member 25-like [Vitis vinifera];; (*SWP) sp|Q9CXF4|TBC15_MOUSE (e_value=6e-36) TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1;; (*TAIR) AT4G28550.1 (e_value=0.0) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:14111204-14113468 FORWARD LENGTH=424;; (*ITAG) Solyc06g008250.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2120441-2130757 transcript_region:SL2.40ch06:2120441..2130757- go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 **-- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00009111g0023.1 protein AED:0.25 eAED:0.26 QI:569|0.93|0.93|1|0.66|0.62|16|0|449; (*GB) gi|359477666|ref|XP_002285287.2| (e_value=0.0) PREDICTED: casein kinase I isoform delta-like isoform 1 [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=0.0) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G14340.1 (e_value=0.0) | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248532-8251668 REVERSE LENGTH=457;; (*ITAG) Solyc06g008320.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2193612-2201004 transcript_region:SL2.40ch06:2193612..2201004- go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00009111g0021.1 protein AED:0.21 eAED:0.21 QI:0|1|0.8|1|1|1|5|366|173; (*GB) gi|76161008|gb|ABA40467.1| (e_value=1e-74) glycoprotein-like protein [Solanum tuberosum];; (*SWP) sp|Q9SIM4|RL141_ARATH (e_value=6e-68) 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1;; (*TAIR) AT2G20450.1 (e_value=5e-69) | Symbols: | Ribosomal protein L14 | chr2:8813923-8815071 FORWARD LENGTH=134;; (*ITAG) Solyc06g083820.2.1 (e_value=4e-78) genomic_reference:SL2.40ch06 gene_region:45415855-45418135 transcript_region:SL2.40ch06:45415855..45418135+ go_terms:GO:0003735,GO:0003723 functional_description:"60 ribosomal protein L14 (AHRD V1 ***- B6TMP6_MAIZE); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00009111g0020.1 protein AED:0.24 eAED:0.24 QI:144|0.9|0.90|1|1|1|11|417|212; (*GB) gi|351724657|ref|NP_001237321.1| (e_value=2e-110) uncharacterized protein LOC100306343 [Glycine max];; (*SWP) sp|Q941D5|VPS2C_ARATH (e_value=6e-108) Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1;; (*TAIR) AT1G03950.1 (e_value=5e-109) | Symbols: VPS2.3 | vacuolar protein sorting-associated protein 2.3 | chr1:1011388-1013212 REVERSE LENGTH=210;; (*ITAG) Solyc02g069680.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:34096946-34101392 transcript_region:SL2.40ch02:34096946..34101392+ go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 2a (AHRD V1 ***- B6TQT7_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00009111g0028.1 protein AED:0.19 eAED:0.27 QI:0|0.3|0.09|1|0.5|0.45|11|103|733; (*ITAG) Solyc09g011950.1.1 (e_value=6e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:5229051-5233625 transcript_region:SL2.40ch09:5229051..5233625- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009111g0010.1 protein AED:0.50 eAED:0.83 QI:0|0|0|0.66|1|1|3|0|109 NbS00004531g0008.1 protein AED:0.00 eAED:0.00 QI:224|1|1|1|1|1|4|187|234; (*GB) gi|225460658|ref|XP_002265483.1| (e_value=4e-81) PREDICTED: uncharacterized protein LOC100257188 [Vitis vinifera];; (*TAIR) AT1G21090.1 (e_value=1e-65) | Symbols: | Cupredoxin superfamily protein | chr1:7384854-7386199 FORWARD LENGTH=242;; (*ITAG) Solyc04g071500.2.1 (e_value=2e-122) genomic_reference:SL2.40ch04 gene_region:56073197-56075929 transcript_region:SL2.40ch04:56073197..56075929- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008972 Cupredoxin "; NbS00004531g0006.1 protein AED:0.32 eAED:0.33 QI:8|0.5|0.66|1|0|0.33|3|677|64; (*GB) gi|224056873|ref|XP_002299066.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g082620.1.1 (e_value=3e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44670745-44671383 transcript_region:SL2.40ch06:44670745..44671383- go_terms:GO:0051082 functional_description:"RNA-binding protein PNO1-like protein (AHRD V1 **** D0MTT7_PHYIN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051082 NbS00004531g0013.1 protein AED:0.38 eAED:0.38 QI:281|0.75|0.8|1|0.5|0.6|5|153|283; (*GB) gi|225460656|ref|XP_002266826.1| (e_value=1e-52) PREDICTED: G-box-binding factor 4 [Vitis vinifera];; (*SWP) sp|P42777|GBF4_ARATH (e_value=9e-28) G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1;; (*TAIR) AT5G44080.1 (e_value=3e-32) | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr5:17738787-17739734 REVERSE LENGTH=315;; (*ITAG) Solyc04g071510.2.1 (e_value=2e-97) genomic_reference:SL2.40ch04 gene_region:56081778-56088951 transcript_region:SL2.40ch04:56081778..56088951- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 *-** B6TN24_MAIZE); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00002388g0003.1 protein AED:0.05 eAED:0.02 QI:0|1|0.62|1|0.71|0.75|8|23|440; (*GB) gi|296083321|emb|CBI22957.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LRZ5|PLDP1_ARATH (e_value=0.0) Phospholipase D p1 OS=Arabidopsis thaliana GN=PLDP1 PE=2 SV=1;; (*TAIR) AT3G16785.1 (e_value=0.0) | Symbols: PLDP1, PLDZ1, PLDZETA1, PLD ZETA 1 | phospholipase D P1 | chr3:5711329-5718696 FORWARD LENGTH=1096;; (*ITAG) Solyc01g065720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:64704413-64723926 transcript_region:SL2.40ch01:64704413..64723926- go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00002388g0101.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|199 NbS00002388g0209.1 protein AED:0.19 eAED:0.23 QI:0|0|0|1|1|0.5|2|0|657 NbS00002388g0203.1 protein AED:0.57 eAED:0.58 QI:0|0|0|1|1|1|2|0|125 NbS00033399g0004.1 protein AED:0.11 eAED:0.11 QI:324|1|1|1|0.5|0.6|5|311|145; (*GB) gi|370988689|dbj|BAL43558.1| (e_value=4e-89) type-A response regulator [Petunia x hybrida];; (*SWP) sp|Q9FPR6|ARR17_ARATH (e_value=1e-69) Two-component response regulator ARR17 OS=Arabidopsis thaliana GN=ARR17 PE=2 SV=1;; (*TAIR) AT3G56380.1 (e_value=9e-71) | Symbols: ARR17, RR17 | response regulator 17 | chr3:20905480-20906368 FORWARD LENGTH=153;; (*ITAG) Solyc06g048930.2.1 (e_value=3e-94) genomic_reference:SL2.40ch06 gene_region:28460694-28463016 transcript_region:SL2.40ch06:28460694..28463016- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00045279g0001.1 protein AED:0.15 eAED:0.15 QI:293|0.75|1|1|0.75|0.6|5|507|284; (*GB) gi|224062856|ref|XP_002300904.1| (e_value=3e-118) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRE4|UGAL2_ARATH (e_value=4e-39) UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1;; (*TAIR) AT4G39390.2 (e_value=2e-115) | Symbols: ATNST-KT1, NST-K1 | nucleotide sugar transporter-KT 1 | chr4:18316278-18317854 FORWARD LENGTH=337;; (*ITAG) Solyc04g051500.2.1 (e_value=8e-153) genomic_reference:SL2.40ch04 gene_region:49811319-49813443 transcript_region:SL2.40ch04:49811319..49813443+ go_terms:GO:0008514 functional_description:"Integral membrane protein like (AHRD V1 **-- B6TAA4_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00018286g0011.1 protein AED:0.08 eAED:0.08 QI:386|0.5|0.66|1|0.5|0.33|3|338|326; (*GB) gi|224126395|ref|XP_002329543.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32740.1 (e_value=8e-52) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:11844883-11846082 FORWARD LENGTH=312;; (*ITAG) Solyc08g077460.2.1 (e_value=1e-95) genomic_reference:SL2.40ch08 gene_region:58545507-58547904 transcript_region:SL2.40ch08:58545507..58547904- go_terms:GO:0008270 functional_description:"S-ribonuclease binding protein SBP1 (Fragment) (AHRD V1 *--- Q9M5Q3_PETHY); contains Interpro domain(s) IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00018286g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.5|1|1|2|0|272; (*GB) gi|298205141|emb|CBI17200.3| (e_value=9e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G03480.1 (e_value=3e-23) | Symbols: | Ankyrin repeat family protein | chr4:1546024-1548871 REVERSE LENGTH=659;; (*ITAG) Solyc07g061740.2.1 (e_value=1e-26) genomic_reference:SL2.40ch07 gene_region:61921993-61925034 transcript_region:SL2.40ch07:61921993..61925034+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00018286g0005.1 protein AED:0.25 eAED:0.77 QI:0|0|0|0.66|1|1|3|0|263; (*GB) gi|298205141|emb|CBI17200.3| (e_value=2e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03670.1 (e_value=3e-13) | Symbols: | ankyrin repeat family protein | chr1:914222-916222 REVERSE LENGTH=616;; (*ITAG) Solyc07g061750.2.1 (e_value=8e-13) genomic_reference:SL2.40ch07 gene_region:61932745-61935454 transcript_region:SL2.40ch07:61932745..61935454+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00042341g0006.1 protein AED:0.20 eAED:0.16 QI:795|0.85|0.86|0.93|0.5|0.6|15|281|309; (*GB) gi|224083179|ref|XP_002306959.1| (e_value=5e-95) predicted protein [Populus trichocarpa];; (*TAIR) AT5G42210.1 (e_value=6e-83) | Symbols: | Major facilitator superfamily protein | chr5:16867865-16870568 FORWARD LENGTH=282;; (*ITAG) Solyc04g081990.2.1 (e_value=5e-156) genomic_reference:SL2.40ch04 gene_region:63403203-63408413 transcript_region:SL2.40ch04:63403203..63408413+ go_terms:GO:0008493 functional_description:"Transporter major facilitator superfamily and tetracycline resistance protein (Fragment) (AHRD V1 **-* B7FRJ1_PHATR); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00042341g0009.1 protein AED:0.01 eAED:0.01 QI:1|0.5|0.33|1|0|0.33|3|0|348; (*GB) gi|2582822|emb|CAA71103.1| (e_value=0.0) CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum];; (*SWP) sp|Q9SGS4|CDSP_ARATH (e_value=2e-130) Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana GN=CDSP32 PE=1 SV=1;; (*TAIR) AT1G76080.1 (e_value=2e-131) | Symbols: ATCDSP32, CDSP32 | chloroplastic drought-induced stress protein of 32 kD | chr1:28548063-28549348 REVERSE LENGTH=302;; (*ITAG) Solyc04g081970.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63392195-63394296 transcript_region:SL2.40ch04:63392195..63394296- go_terms:GO:0005515 functional_description:"Thioredoxin (AHRD V1 ***- D8U146_VOLCA); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0005515 NbS00006216g0013.1 protein AED:0.18 eAED:0.19 QI:0|0|0|0.66|0.5|0.33|3|0|249; (*GB) gi|356543766|ref|XP_003540331.1| (e_value=4e-39) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max];; (*SWP) sp|O64477|Y2913_ARATH (e_value=1e-34) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=1e-35) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g009440.1.1 (e_value=2e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4495662-4496498 transcript_region:SL2.40ch07:4495662..4496498- go_terms:GO:0048544,GO:0005529 functional_description:"S-locus glycoprotein (Fragment) (AHRD V1 ***- Q84KU9_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0048544,GO:0005529 NbS00006216g0011.1 protein AED:0.18 eAED:0.19 QI:0|0.78|0.66|1|0.64|0.66|15|469|584; (*GB) gi|296081171|emb|CBI18197.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=0.0) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G76850.1 (e_value=0.0) | Symbols: SEC5A | exocyst complex component sec5 | chr1:28848013-28854282 FORWARD LENGTH=1090;; (*ITAG) Solyc12g056520.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47821594-47838915 transcript_region:SL2.40ch12:47821594..47838915- functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q5SUZ6_MOUSE)"; NbS00006216g0012.1 protein AED:0.13 eAED:0.13 QI:129|1|1|1|1|1|4|627|219; (*GB) gi|254212161|gb|ACT65738.1| (e_value=2e-161) QM [Nicotiana benthamiana];; (*SWP) sp|P93847|RL10_SOLME (e_value=1e-158) 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=2e-144) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=2e-161) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00027335g0001.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.2|0.8|1|1|5|0|536; (*GB) gi|86212374|gb|ABC87760.1| (e_value=0.0) jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata];; (*SWP) sp|Q6I581|GH35_ORYSJ (e_value=0.0) Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1;; (*TAIR) AT2G46370.4 (e_value=0.0) | Symbols: JAR1 | Auxin-responsive GH3 family protein | chr2:19034233-19036369 FORWARD LENGTH=586;; (*ITAG) Solyc10g011660.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:3901428-3905499 transcript_region:SL2.40ch10:3901428..3905499- go_terms:GO:0080123,GO:0070566 functional_description:"GH3 family protein (AHRD V1 ***- B9GQG9_POPTR); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0080123,GO:0070566 NbS00026435g0003.1 protein AED:0.55 eAED:0.55 QI:0|0|0|0.66|1|1|3|0|135 NbS00005871g0012.1 protein AED:0.06 eAED:0.06 QI:513|0.66|0.57|1|0.5|0.57|7|221|622; (*GB) gi|337273025|gb|AEI70250.1| (e_value=0.0) auxin response factor 10 [Solanum lycopersicum];; (*SWP) sp|Q653H7|ARFR_ORYSJ (e_value=0.0) Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1;; (*TAIR) AT4G30080.1 (e_value=0.0) | Symbols: ARF16 | auxin response factor 16 | chr4:14703369-14705564 REVERSE LENGTH=670;; (*ITAG) Solyc06g075150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43020594-43023443 transcript_region:SL2.40ch06:43020594..43023443+ go_terms:GO:0046982,GO:0005516 functional_description:"Auxin response factor 16 (AHRD V1 ***- D9IVB4_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0046982,GO:0005516 NbS00005871g0015.1 protein AED:0.54 eAED:0.80 QI:0|0|0|0.4|0.5|0.6|5|0|181 NbS00061011g0001.1 protein AED:0.34 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|77; (*GB) gi|26397273|sp|O82067.3|TOM7A_SOLTU (e_value=4e-24) RecName: Full=Mitochondrial import receptor subunit TOM7-1; AltName: Full=Translocase of outer membrane 7 kDa subunit 1;; (*SWP) sp|O82067|TOM7A_SOLTU (e_value=1e-25) Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3;; (*TAIR) AT5G41685.1 (e_value=1e-19) | Symbols: | Mitochondrial outer membrane translocase complex, subunit Tom7 | chr5:16669419-16669646 REVERSE LENGTH=75;; (*ITAG) Solyc07g015970.1.1 (e_value=8e-27) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:6053600-6053818 transcript_region:SL2.40ch07:6053600..6053818+ go_terms:GO:0005741 functional_description:"Mitochondrial import receptor subunit TOM7-1 (AHRD V1 ***- B6SJR3_MAIZE); contains Interpro domain(s) IPR012621 Mitochondrial outer membrane translocase complex, subunitt Tom7 "; GO:0005741 NbS00044603g0002.1 protein AED:0.07 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|181; (*GB) gi|388493668|gb|AFK34900.1| (e_value=2e-33) unknown [Lotus japonicus];; (*SWP) sp|Q9FYK2|CML25_ARATH (e_value=4e-32) Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1;; (*TAIR) AT1G24620.1 (e_value=3e-33) | Symbols: | EF hand calcium-binding protein family | chr1:8723893-8724453 REVERSE LENGTH=186;; (*ITAG) Solyc01g005370.2.1 (e_value=6e-37) genomic_reference:SL2.40ch01 gene_region:259638-260564 transcript_region:SL2.40ch01:259638..260564+ go_terms:GO:0005509 functional_description:"Calmodulin-2 (AHRD V1 ***- D7LFI7_ARALY); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00026042g0004.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|1|1|4|0|329; (*GB) gi|290760236|gb|ADD54643.1| (e_value=0.0) peroxidase [Bruguiera gymnorhiza];; (*SWP) sp|Q96518|PER16_ARATH (e_value=6e-177) Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2;; (*TAIR) AT2G18980.1 (e_value=4e-178) | Symbols: | Peroxidase superfamily protein | chr2:8233419-8235294 REVERSE LENGTH=323;; (*ITAG) Solyc07g017880.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8260969-8263025 transcript_region:SL2.40ch07:8260969..8263025- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** D4NYQ9_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00026042g0017.1 protein AED:0.37 eAED:0.37 QI:0|0.57|0.25|0.75|1|1|8|0|323; (*GB) gi|225446010|ref|XP_002268176.1| (e_value=0.0) PREDICTED: putative glucose-6-phosphate 1-epimerase [Vitis vinifera];; (*SWP) sp|Q40784|AAPC_CENCI (e_value=3e-179) Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1;; (*TAIR) AT5G57330.1 (e_value=5e-180) | Symbols: | Galactose mutarotase-like superfamily protein | chr5:23218392-23220664 FORWARD LENGTH=312;; (*ITAG) Solyc07g017900.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:8283617-8294010 transcript_region:SL2.40ch07:8283617..8294010- go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** D7MN90_ARALY); contains Interpro domain(s) IPR008183 Aldose 1-epimerase "; GO:0047938 NbS00026042g0005.1 protein AED:0.20 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|401; (*GB) gi|224120492|ref|XP_002318342.1| (e_value=2e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT5G20600.1 (e_value=9e-30) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966345-6967943 REVERSE LENGTH=532;; (*ITAG) Solyc07g017940.1.1 (e_value=3e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:8626400-8628169 transcript_region:SL2.40ch07:8626400..8628169+ go_terms:GO:0030688 functional_description:"Ribosomal RNA processing protein 1 homolog B (AHRD V1 *--- RRP1B_HUMAN); contains Interpro domain(s) IPR010301 Nucleolar, Nop52 "; GO:0030688 NbS00026042g0001.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|248; (*GB) gi|297812243|ref|XP_002874005.1| (e_value=2e-67) hypothetical protein ARALYDRAFT_910101 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q14684|RRP1B_HUMAN (e_value=2e-21) Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens GN=RRP1B PE=1 SV=3;; (*TAIR) AT5G20600.1 (e_value=2e-68) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | chr5:6966345-6967943 REVERSE LENGTH=532;; (*ITAG) Solyc07g017940.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:8626400-8628169 transcript_region:SL2.40ch07:8626400..8628169+ go_terms:GO:0030688 functional_description:"Ribosomal RNA processing protein 1 homolog B (AHRD V1 *--- RRP1B_HUMAN); contains Interpro domain(s) IPR010301 Nucleolar, Nop52 "; GO:0030688 NbS00059525g0004.1 protein AED:0.01 eAED:0.02 QI:24|1|0|1|1|1|3|0|509; (*GB) gi|224106197|ref|XP_002314081.1| (e_value=5e-143) predicted protein [Populus trichocarpa];; (*TAIR) AT5G12460.1 (e_value=2e-111) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47998020-48000222 transcript_region:SL2.40ch11:47998020..48000222+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00024664g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|130827|sp|P07053.1|PR1B_TOBAC (e_value=5e-105) RecName: Full=Pathogenesis-related protein 1B; Short=PR-1B; Flags: Precursor;; (*SWP) sp|P07053|PR1B_TOBAC (e_value=1e-106) Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G14580.1 (e_value=5e-63) | Symbols: ATPRB1, PRB1 | basic pathogenesis-related protein 1 | chr2:6225703-6226188 REVERSE LENGTH=161;; (*ITAG) Solyc01g106620.2.1 (e_value=3e-69) genomic_reference:SL2.40ch01 gene_region:86187760-86188655 transcript_region:SL2.40ch01:86187760..86188655+ go_terms:GO:0005515 functional_description:"Pathogenesis-related protein 1a (AHRD V1 **-- Q00MX6_MALDO); contains Interpro domain(s) IPR018244 Allergen V5/Tpx-1 related, conserved site "; GO:0005515 NbS00008477g0014.1 protein AED:0.03 eAED:0.03 QI:56|1|1|1|0.5|0.71|7|980|276; (*GB) gi|225448986|ref|XP_002270805.1| (e_value=2e-124) PREDICTED: probable S-acyltransferase At5g04270 [Vitis vinifera];; (*SWP) sp|Q500Z2|ZDH20_ARATH (e_value=4e-97) Probable S-acyltransferase At5g04270 OS=Arabidopsis thaliana GN=At5g04270 PE=2 SV=1;; (*TAIR) AT5G04270.1 (e_value=3e-98) | Symbols: | DHHC-type zinc finger family protein | chr5:1182896-1184718 REVERSE LENGTH=254;; (*ITAG) Solyc05g055630.2.1 (e_value=3e-163) genomic_reference:SL2.40ch05 gene_region:64350028-64353656 transcript_region:SL2.40ch05:64350028..64353656+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 ***- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00008477g0013.1 protein AED:0.27 eAED:0.31 QI:7|0.77|0.78|1|0.77|0.78|19|1246|342; (*GB) gi|359486573|ref|XP_002270458.2| (e_value=4e-163) PREDICTED: vacuolar protein sorting-associated protein 33 homolog [Vitis vinifera];; (*SWP) sp|Q94KJ7|VPS33_ARATH (e_value=7e-148) Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1;; (*TAIR) AT3G54860.1 (e_value=5e-149) | Symbols: ATVPS33, VPS33 | Sec1/munc18-like (SM) proteins superfamily | chr3:20324286-20329841 REVERSE LENGTH=592;; (*ITAG) Solyc05g055600.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64311153-64318419 transcript_region:SL2.40ch05:64311153..64318419+ go_terms:GO:0030348,GO:0030347 functional_description:"Vacuolar protein-sorting protein 33 (AHRD V1 ***- B6T8U3_MAIZE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0030348,GO:0030347 NbS00008477g0015.1 protein AED:0.18 eAED:0.47 QI:13|0|0.5|1|0|0|2|484|59 NbS00008477g0016.1 protein AED:0.03 eAED:0.03 QI:254|0.66|0.75|1|1|1|4|244|929; (*GB) gi|225448966|ref|XP_002273083.1| (e_value=0.0) PREDICTED: lysine-specific histone demethylase 1 homolog 3-like [Vitis vinifera];; (*SWP) sp|Q9CAE3|LDL3_ARATH (e_value=0.0) Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=FLD PE=1 SV=1;; (*TAIR) AT3G10390.1 (e_value=0.0) | Symbols: FLD | Flavin containing amine oxidoreductase family protein | chr3:3229293-3232345 FORWARD LENGTH=884;; (*ITAG) Solyc11g008320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00008477g0005.1 protein AED:0.15 eAED:0.16 QI:0|0.5|0|1|1|0.33|3|0|270; (*GB) gi|296082872|emb|CBI22173.3| (e_value=1e-95) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g055650.2.1 (e_value=7e-85) genomic_reference:SL2.40ch05 gene_region:64356756-64358236 transcript_region:SL2.40ch05:64356756..64358236- functional_description:"Polyvinylalcohol dehydrogenase (AHRD V1 ***- D4T9G5_9XANT); contains Interpro domain(s) IPR011047 Quinonprotein alcohol dehydrogenase-like "; NbS00008477g0017.1 protein AED:0.27 eAED:0.27 QI:0|0|0|1|0|0|3|0|156; (*GB) gi|332308980|gb|AEE39461.1| (e_value=1e-25) SLF-interacting SKP1-like protein 1 [Petunia integrifolia subsp. inflata];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=1e-15) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=8e-17) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00024053g0007.1 protein AED:0.12 eAED:0.12 QI:533|0.89|0.85|1|0.89|0.9|20|326|987; (*GB) gi|334855489|gb|AEH16636.1| (e_value=0.0) kinesin-like protein [Nicotiana tabacum];; (*SWP) sp|O81635|ATK4_ARATH (e_value=0.0) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G47500.1 (e_value=0.0) | Symbols: | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | chr2:19493247-19497882 FORWARD LENGTH=983;; (*ITAG) Solyc09g075480.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62672892-62679962 transcript_region:SL2.40ch09:62672892..62679962- go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00024053g0006.1 protein AED:0.39 eAED:0.58 QI:60|0|0|0.5|0|0.5|2|0|24 NbS00016182g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|352; (*GB) gi|225429770|ref|XP_002280575.1| (e_value=4e-119) PREDICTED: uncharacterized protein LOC100262813 [Vitis vinifera];; (*TAIR) AT5G25500.1 (e_value=1e-93) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017180g0002.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|94; (*ITAG) Solyc10g086230.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:64448552-64448794 transcript_region:SL2.40ch10:64448552..64448794- functional_description:"Unknown Protein (AHRD V1)"; NbS00017180g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|85; (*ITAG) Solyc09g008080.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:1552112-1555112 transcript_region:SL2.40ch09:1552112..1555112+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR019955 Ubiquitin supergroup "; NbS00029312g0010.1 protein AED:0.05 eAED:0.05 QI:109|0.85|0.8|1|0.28|0.33|15|387|328; (*GB) gi|297738563|emb|CBI27808.3| (e_value=1e-160) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G06005.1 (e_value=2e-138) | Symbols: FIP1 | FRIGIDA interacting protein 1 | chr2:2332583-2336022 FORWARD LENGTH=355;; (*ITAG) Solyc12g009100.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2419442-2430753 transcript_region:SL2.40ch12:2419442..2430753- go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1)"; GO:0005515 NbS00029312g0009.1 protein AED:0.32 eAED:0.33 QI:0|0.75|0.4|0.8|0.5|0.6|5|0|89; (*GB) gi|238481327|ref|NP_001154726.1| (e_value=5e-50) RING-box protein 1 [Arabidopsis thaliana];; (*SWP) sp|Q940X7|RBX1A_ARATH (e_value=2e-50) RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1;; (*TAIR) AT5G20570.3 (e_value=1e-52) | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | chr5:6956905-6958221 REVERSE LENGTH=136;; (*ITAG) Solyc12g009120.1.1 (e_value=3e-51) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2442558-2445495 transcript_region:SL2.40ch12:2442558..2445495+ go_terms:GO:0008190 functional_description:"RING-box protein (AHRD V1 ***- Q2PYP4_ARAHY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008190 NbS00003667g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|4|0|628; (*GB) gi|255577864|ref|XP_002529805.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SDA8|FBL10_ARATH (e_value=0.0) F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1;; (*TAIR) AT2G17020.1 (e_value=0.0) | Symbols: | F-box/RNI-like superfamily protein | chr2:7396559-7398787 REVERSE LENGTH=656;; (*ITAG) Solyc01g111890.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89817468-89825238 transcript_region:SL2.40ch01:89817468..89825238- go_terms:GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00003667g0014.1 protein AED:0.27 eAED:0.30 QI:0|0.66|0.68|1|0.66|0.68|16|0|525; (*GB) gi|297744550|emb|CBI37812.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55GU0|Y9955_DICDI (e_value=6e-52) Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1;; (*TAIR) AT4G38470.1 (e_value=0.0) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc01g111880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89803298-89811106 transcript_region:SL2.40ch01:89803298..89811106- go_terms:GO:0004713 functional_description:"Tyrosine-protein kinase transforming protein Src (AHRD V1 *-** SRC_AVIST); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004713 NbS00013878g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|1|1|8|163|315; (*GB) gi|255540407|ref|XP_002511268.1| (e_value=3e-163) 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis];; (*SWP) sp|O33513|CBBY_RHOCA (e_value=3e-44) Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1;; (*TAIR) AT3G48420.1 (e_value=6e-164) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:17929743-17931551 FORWARD LENGTH=319;; (*ITAG) Solyc03g111610.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56300382-56304521 transcript_region:SL2.40ch03:56300382..56304521- go_terms:GO:0005515,GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 **** Q10I42_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016787 NbS00013878g0005.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|177; (*GB) gi|359491729|ref|XP_002277691.2| (e_value=7e-47) PREDICTED: uncharacterized protein LOC100248419 [Vitis vinifera];; (*TAIR) AT1G24480.1 (e_value=6e-47) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:8676440-8677159 REVERSE LENGTH=239;; (*ITAG) Solyc03g111620.1.1 (e_value=5e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56308891-56309625 transcript_region:SL2.40ch03:56308891..56309625- go_terms:GO:0008152 functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00008958g0004.1 protein AED:0.04 eAED:0.04 QI:44|1|0|1|1|0.5|2|0|46 NbS00034994g0003.1 protein AED:0.31 eAED:0.36 QI:0|0|0|1|1|1|2|0|157; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-45) hypothetical protein [Nicotiana tabacum]; NbS00026282g0002.1 protein AED:0.33 eAED:0.34 QI:0|0|0.5|1|0|0.5|2|647|97; (*GB) gi|356538835|ref|XP_003537906.1| (e_value=1e-26) PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Glycine max];; (*SWP) sp|Q9XIM8|PP155_ARATH (e_value=9e-14) Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1;; (*TAIR) AT2G15980.1 (e_value=7e-15) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6951349-6952845 REVERSE LENGTH=498;; (*ITAG) Solyc10g051010.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46846396-46847877 transcript_region:SL2.40ch10:46846396..46847877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00026282g0008.1 protein AED:0.32 eAED:0.32 QI:0|0|0|1|0|0|2|0|322; (*GB) gi|225428586|ref|XP_002281132.1| (e_value=5e-78) PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera];; (*SWP) sp|Q9XIM8|PP155_ARATH (e_value=4e-65) Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1;; (*TAIR) AT2G15980.1 (e_value=3e-66) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6951349-6952845 REVERSE LENGTH=498;; (*ITAG) Solyc10g051010.1.1 (e_value=1e-147) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46846396-46847877 transcript_region:SL2.40ch10:46846396..46847877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00037009g0002.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|398; (*GB) gi|225439592|ref|XP_002265892.1| (e_value=3e-116) PREDICTED: sex determination protein tasselseed-2-like [Vitis vinifera];; (*SWP) sp|P50160|TS2_MAIZE (e_value=3e-82) Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1;; (*TAIR) AT3G51680.1 (e_value=4e-97) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:19173622-19174667 REVERSE LENGTH=303;; (*ITAG) Solyc10g085380.1.1 (e_value=7e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63909641-63910974 transcript_region:SL2.40ch10:63909641..63910974+ go_terms:GO:0008152,GO:0055114 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4Y6_ZEALU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00014287g0001.1 protein AED:0.17 eAED:0.17 QI:341|1|1|1|0.88|0.8|10|671|429; (*GB) gi|255538354|ref|XP_002510242.1| (e_value=0.0) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q9FX08|P2C12_ARATH (e_value=0.0) Probable protein phosphatase 2C 12 OS=Arabidopsis thaliana GN=At1g47380 PE=2 SV=1;; (*TAIR) AT1G47380.1 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428;; (*ITAG) Solyc04g079120.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61298550-61303970 transcript_region:SL2.40ch04:61298550..61303970- go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein expressed (AHRD V1 ***- Q94LH3_ORYSJ); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00022207g0011.1 protein AED:0.06 eAED:0.07 QI:552|0.75|0.4|1|0.5|0.6|5|0|527; (*GB) gi|356546666|ref|XP_003541744.1| (e_value=4e-104) PREDICTED: uncharacterized protein LOC100793951 [Glycine max];; (*TAIR) AT1G61215.1 (e_value=5e-78) | Symbols: BRD4 | bromodomain 4 | chr1:22573173-22575374 FORWARD LENGTH=475;; (*ITAG) Solyc02g078810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38041787-38045657 transcript_region:SL2.40ch02:38041787..38045657+ go_terms:GO:0003677 functional_description:"Bromodomain protein (AHRD V1 ***- B9H245_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00022207g0010.1 protein AED:0.25 eAED:0.25 QI:270|0.88|0.88|0.94|0.88|0.83|18|0|1031; (*GB) gi|357446405|ref|XP_003593480.1| (e_value=0.0) Katanin p80 WD40-containing subunit B1 [Medicago truncatula];; (*SWP) sp|Q8H0T9|KTNB1_ARATH (e_value=3e-154) Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3;; (*TAIR) AT1G61210.2 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:22564785-22571555 FORWARD LENGTH=1179;; (*ITAG) Solyc02g078800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38023943-38037310 transcript_region:SL2.40ch02:38023943..38037310+ go_terms:GO:0046982 functional_description:"WD-repeat protein (AHRD V1 *--- B0C2Q9_ACAM1); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0046982 NbS00022207g0001.1 protein AED:0.28 eAED:0.60 QI:0|0|0|1|1|1|3|0|202; (*ITAG) Solyc01g056230.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00060737g0003.1 protein AED:0.01 eAED:0.01 QI:223|1|1|1|1|1|5|294|189; (*GB) gi|33330864|gb|AAQ10675.1| (e_value=2e-77) type-A response regulator [Catharanthus roseus];; (*SWP) sp|Q9ZWS6|ARR6_ARATH (e_value=3e-67) Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2;; (*TAIR) AT5G62920.1 (e_value=2e-68) | Symbols: ARR6 | response regulator 6 | chr5:25252745-25254158 REVERSE LENGTH=186;; (*ITAG) Solyc03g113720.2.1 (e_value=4e-92) genomic_reference:SL2.40ch03 gene_region:57836552-57838432 transcript_region:SL2.40ch03:57836552..57838432- go_terms:GO:0005515,GO:0000156 functional_description:"Two-component response regulator ARR3 (AHRD V1 **** B6TSM4_MAIZE); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0005515,GO:0000156 NbS00010282g0016.1 protein AED:0.22 eAED:0.22 QI:15|0.5|0.8|1|0|0.2|5|109|323; (*GB) gi|359431031|gb|AEV46326.1| (e_value=1e-100) apoplastic invertase [Solanum tuberosum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=5e-76) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT3G52600.2 (e_value=2e-57) | Symbols: AtcwINV2, CWINV2 | cell wall invertase 2 | chr3:19507080-19508833 REVERSE LENGTH=524;; (*ITAG) Solyc10g083300.1.1 (e_value=2e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62447632-62451825 transcript_region:SL2.40ch10:62447632..62451825- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00010282g0017.1 protein AED:0.32 eAED:0.32 QI:0|0.5|0.8|1|0.75|0.8|5|368|516; (*GB) gi|551259|emb|CAA57428.1| (e_value=0.0) beta-fructofuranosidase [Nicotiana tabacum];; (*SWP) sp|P26792|INV1_DAUCA (e_value=0.0) Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Daucus carota GN=INV1 PE=1 SV=1;; (*TAIR) AT2G36190.1 (e_value=0.0) | Symbols: AtcwINV4, cwINV4 | cell wall invertase 4 | chr2:15174951-15177785 REVERSE LENGTH=591;; (*ITAG) Solyc10g083290.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62435058-62440444 transcript_region:SL2.40ch10:62435058..62440444- go_terms:GO:0005975 functional_description:"Beta-fructofuranosidase insoluble isoenzyme 2 (AHRD V1 **-- B6U1H5_MAIZE); contains Interpro domain(s) IPR018053 Glycoside hydrolase, family 32, active site IPR013148 Glycosyl hydrolases family 32, N-terminal IPR001362 Glycoside hydrolase, family 32 "; GO:0005975 NbS00010282g0018.1 protein AED:0.32 eAED:0.32 QI:0|0.8|0.66|0.83|1|1|6|384|157; (*GB) gi|82623419|gb|ABB87124.1| (e_value=6e-82) hypothetical protein [Solanum tuberosum];; (*SWP) sp|Q9CAX6|RS142_ARATH (e_value=1e-76) 40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1;; (*TAIR) AT3G11510.1 (e_value=9e-78) | Symbols: | Ribosomal protein S11 family protein | chr3:3623757-3624866 REVERSE LENGTH=150;; (*ITAG) Solyc10g083280.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62430835-62433599 transcript_region:SL2.40ch10:62430835..62433599+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S11 (AHRD V1 ***- RS11_CAUSK); contains Interpro domain(s) IPR018102 Ribosomal S11, conserved site "; GO:0005840 NbS00020248g0004.1 protein AED:0.36 eAED:0.40 QI:6|0.5|0.33|1|1|1|3|216|324; (*GB) gi|224107815|ref|XP_002314611.1| (e_value=3e-132) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10650.1 (e_value=1e-105) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr1:3524122-3525318 REVERSE LENGTH=339;; (*ITAG) Solyc05g005210.2.1 (e_value=5e-177) genomic_reference:SL2.40ch05 gene_region:179199-183983 transcript_region:SL2.40ch05:179199..183983- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 2 (AHRD V1 *--- Q8UWD2_DANRE); contains Interpro domain(s) IPR017066 S-ribonuclease binding protein, SBP1, pollen "; GO:0008270 NbS00008180g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|171; (*GB) gi|388498200|gb|AFK37166.1| (e_value=9e-62) unknown [Medicago truncatula];; (*SWP) sp|Q9LR64|Y1360_ARATH (e_value=3e-58) Thylakoid lumenal protein At1g03610, chloroplastic OS=Arabidopsis thaliana GN=At1g03600 PE=1 SV=1;; (*TAIR) AT1G03600.1 (e_value=3e-59) | Symbols: PSB27 | photosystem II family protein | chr1:898916-899440 FORWARD LENGTH=174;; (*ITAG) Solyc07g054290.1.1 (e_value=7e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59964421-59965014 transcript_region:SL2.40ch07:59964421..59965014- functional_description:"Photosystem II family protein (AHRD V1 *-*- D7KCG4_ARALY)"; NbS00052746g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0|0|2|1167|547; (*GB) gi|225443851|ref|XP_002267303.1| (e_value=1e-158) PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Vitis vinifera];; (*SWP) sp|Q1PFQ9|PPR62_ARATH (e_value=4e-143) Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2;; (*TAIR) AT1G28690.1 (e_value=3e-144) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:10080042-10081604 REVERSE LENGTH=520;; (*ITAG) Solyc11g010260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3323400-3327178 transcript_region:SL2.40ch11:3323400..3327178+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCY7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006547g0006.1 protein AED:0.00 eAED:0.00 QI:79|1|0.5|1|1|1|2|0|298; (*GB) gi|257831443|gb|ACV71022.1| (e_value=4e-144) UPA23 [Capsicum annuum];; (*TAIR) AT2G28690.1 (e_value=2e-55) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231;; (*ITAG) Solyc06g005300.2.1 (e_value=2e-101) genomic_reference:SL2.40ch06 gene_region:307747-309578 transcript_region:SL2.40ch06:307747..309578- functional_description:"UPA23 (AHRD V1 ***- C8YZB5_CAPAN); contains Interpro domain(s) IPR012862 Protein of unknown function DUF1635 "; NbS00006547g0009.1 protein AED:0.24 eAED:0.25 QI:18|1|0.85|1|0.83|0.71|7|323|210; (*GB) gi|255580568|ref|XP_002531108.1| (e_value=1e-120) Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q6NM25|UTR5_ARATH (e_value=2e-117) UDP-galactose/UDP-glucose transporter 5 OS=Arabidopsis thaliana GN=UTR5 PE=2 SV=1;; (*TAIR) AT3G46180.1 (e_value=1e-118) | Symbols: UTR5, ATUTR5 | UDP-galactose transporter 5 | chr3:16954671-16956800 REVERSE LENGTH=347;; (*ITAG) Solyc06g005290.2.1 (e_value=6e-146) genomic_reference:SL2.40ch06 gene_region:295547-304925 transcript_region:SL2.40ch06:295547..304925- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 5 (AHRD V1 **** D7LMW4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00006547g0008.1 protein AED:0.48 eAED:0.81 QI:9|0|0|1|0|0|2|0|59; (*ITAG) Solyc06g005290.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:295547-304925 transcript_region:SL2.40ch06:295547..304925- go_terms:GO:0005459 functional_description:"UDP-galactose transporter 5 (AHRD V1 **** D7LMW4_ARALY); contains Interpro domain(s) IPR013657 UAA transporter "; GO:0005459 NbS00006547g0102.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|1|1|2|0|875 NbS00006547g0101.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|598 NbS00006547g0105.1 protein AED:0.19 eAED:0.19 QI:0|0|0|0.5|1|1|2|0|102 NbS00014715g0001.1 protein AED:0.41 eAED:0.41 QI:209|0|0.5|0.5|1|1|2|0|67 NbS00014715g0102.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|108 NbS00014715g0101.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|139 NbS00014715g0107.1 protein AED:0.26 eAED:0.26 QI:0|0|0.5|1|0|0.5|2|76|126 NbS00005725g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0|1|1|1|2|0|170; (*GB) gi|255547662|ref|XP_002514888.1| (e_value=9e-58) WRKY transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9S763|WRK45_ARATH (e_value=8e-51) Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1;; (*TAIR) AT3G01970.1 (e_value=6e-52) | Symbols: WRKY45, ATWRKY45 | WRKY DNA-binding protein 45 | chr3:326614-327159 REVERSE LENGTH=147;; (*ITAG) Solyc02g094270.1.1 (e_value=4e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49426008-49428482 transcript_region:SL2.40ch02:49426008..49428482- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- A3FBG3_WHEAT); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00005725g0003.1 protein AED:0.20 eAED:0.20 QI:7|1|1|1|0.66|0.5|4|121|175; (*GB) gi|388515319|gb|AFK45721.1| (e_value=1e-19) unknown [Medicago truncatula];; (*TAIR) AT5G14090.1 (e_value=1e-12) | Symbols: | unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:4547230-4549214 FORWARD LENGTH=358; NbS00010426g0001.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|121; (*GB) gi|224140209|ref|XP_002323477.1| (e_value=8e-25) SAUR family protein [Populus trichocarpa];; (*TAIR) AT2G28085.1 (e_value=3e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr2:11968182-11968556 REVERSE LENGTH=124;; (*ITAG) Solyc10g084020.1.1 (e_value=2e-45) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:63012410-63012805 transcript_region:SL2.40ch10:63012410..63012805+ functional_description:"Auxin responsive SAUR protein (AHRD V1 *-*- Q2HTF3_MEDTR); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00022650g0001.1 protein AED:0.15 eAED:0.15 QI:165|1|0.5|1|0|0|2|0|85; (*GB) gi|359494939|ref|XP_003634876.1| (e_value=7e-43) PREDICTED: exportin-7-like [Vitis vinifera];; (*SWP) sp|Q5ZLT0|XPO7_CHICK (e_value=2e-12) Exportin-7 OS=Gallus gallus GN=XPO7 PE=2 SV=1;; (*TAIR) AT5G06120.1 (e_value=3e-35) | Symbols: | ARM repeat superfamily protein | chr5:1844797-1852601 FORWARD LENGTH=1066;; (*ITAG) Solyc01g056520.2.1 (e_value=4e-47) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00022650g0008.1 protein AED:0.14 eAED:0.17 QI:0|0.88|0.77|0.94|0.76|0.77|18|0|681; (*GB) gi|255569209|ref|XP_002525573.1| (e_value=0.0) Exportin-7, putative [Ricinus communis];; (*SWP) sp|Q9EPK7|XPO7_MOUSE (e_value=2e-148) Exportin-7 OS=Mus musculus GN=Xpo7 PE=2 SV=3;; (*TAIR) AT5G06120.2 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr5:1845309-1852601 FORWARD LENGTH=1052;; (*ITAG) Solyc01g056520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00014185g0001.1 protein AED:0.10 eAED:0.10 QI:196|0.75|0.8|1|1|1|5|178|542; (*GB) gi|359482436|ref|XP_002270932.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100246343 [Vitis vinifera];; (*TAIR) AT3G14360.1 (e_value=3e-170) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:4791596-4793534 FORWARD LENGTH=518;; (*ITAG) Solyc03g123750.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64550025-64553196 transcript_region:SL2.40ch03:64550025..64553196+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00014185g0010.1 protein AED:0.22 eAED:0.23 QI:586|0.93|0.93|1|0.86|0.81|16|0|556; (*GB) gi|162955765|gb|ABY25272.1| (e_value=0.0) phytoene desaturase [Nicotiana benthamiana];; (*SWP) sp|P80093|PDS_CAPAN (e_value=0.0) 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=1 SV=1;; (*TAIR) AT4G14210.1 (e_value=0.0) | Symbols: PDS3, PDS, PDE226 | phytoene desaturase 3 | chr4:8190426-8194769 REVERSE LENGTH=566;; (*ITAG) Solyc03g123760.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64554061-64561664 transcript_region:SL2.40ch03:64554061..64561664+ go_terms:GO:0016166 functional_description:"Phytoene desaturase"; GO:0016166 NbS00014185g0008.1 protein AED:0.36 eAED:0.36 QI:0|0.81|0.83|0.91|0.72|0.83|12|469|508; (*GB) gi|4512263|dbj|BAA75232.1| (e_value=0.0) H+/Ca2+ exchanger 2 [Ipomoea nil];; (*SWP) sp|Q5KQN0|CAX2_ORYSJ (e_value=0.0) Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2;; (*TAIR) AT1G55730.2 (e_value=0.0) | Symbols: ATCAX5, CAX5 | cation exchanger 5 | chr1:20831387-20833941 REVERSE LENGTH=441;; (*ITAG) Solyc12g055750.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47093237-47100681 transcript_region:SL2.40ch12:47093237..47100681- go_terms:GO:0055085,GO:0016021 functional_description:"Vacuolar cation/proton exchanger 2 (AHRD V1 ***- B6UEI1_MAIZE); contains Interpro domain(s) IPR004713 Calcium/proton exchanger "; GO:0055085,GO:0016021 NbS00021550g0014.1 protein AED:0.11 eAED:0.11 QI:182|0.71|0.75|1|0.71|0.62|8|207|588; (*GB) gi|225460999|ref|XP_002278373.1| (e_value=0.0) PREDICTED: DEAD-box ATP-dependent RNA helicase 32 [Vitis vinifera];; (*SWP) sp|Q9FFT9|RH32_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana GN=RH32 PE=2 SV=1;; (*TAIR) AT5G54910.1 (e_value=0.0) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:22298668-22301719 REVERSE LENGTH=739;; (*ITAG) Solyc07g064520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63849466-63854084 transcript_region:SL2.40ch07:63849466..63854084- go_terms:GO:0004004 functional_description:"Atp-dependent RNA helicase (AHRD V1 *-** B8BY61_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00021550g0011.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.66|1|0|0.33|6|350|309; (*GB) gi|75334880|sp|Q9LEB4.1|RBP45_NICPL (e_value=4e-127) RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protein RBP45; AltName: Full=RNA-binding protein 45; Short=NplRBP45;; (*SWP) sp|Q9LEB4|RBP45_NICPL (e_value=1e-128) Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1;; (*TAIR) AT4G27000.1 (e_value=3e-62) | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:13554983-13557763 REVERSE LENGTH=415;; (*ITAG) Solyc07g064510.2.1 (e_value=1e-112) genomic_reference:SL2.40ch07 gene_region:63845123-63849000 transcript_region:SL2.40ch07:63845123..63849000- go_terms:GO:0042802 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 **-* PABP2_ARATH); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00031969g0007.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|1|1|2|0|144; (*ITAG) Solyc10g049530.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00031969g0005.1 protein AED:0.15 eAED:0.17 QI:92|0.9|0.90|1|1|1|11|105|521; (*GB) gi|385178691|sp|B9RAJ0.2|DNPEP_RICCO (e_value=0.0) RecName: Full=Probable aspartyl aminopeptidase;; (*SWP) sp|B9RAJ0|DNPEP_RICCO (e_value=0.0) Probable aspartyl aminopeptidase OS=Ricinus communis GN=RCOM_1506700 PE=2 SV=2;; (*TAIR) AT5G60160.1 (e_value=0.0) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:24223887-24226783 REVERSE LENGTH=477;; (*ITAG) Solyc03g111180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55881016-55887536 transcript_region:SL2.40ch03:55881016..55887536- go_terms:GO:0005773 functional_description:"Aspartyl aminopeptidase-like protein (AHRD V1 ***- Q8LF32_ARATH); contains Interpro domain(s) IPR001948 Peptidase M18, aminopeptidase I "; GO:0005773 NbS00039233g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|132; (*GB) gi|1617197|emb|CAA96569.1| (e_value=4e-83) CP12 [Nicotiana tabacum];; (*SWP) sp|Q9LZP9|CP122_ARATH (e_value=3e-39) Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1;; (*TAIR) AT3G62410.1 (e_value=3e-40) | Symbols: CP12-2, CP12 | CP12 domain-containing protein 2 | chr3:23091006-23091401 FORWARD LENGTH=131;; (*ITAG) Solyc06g009630.1.1 (e_value=9e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:3584164-3584547 transcript_region:SL2.40ch06:3584164..3584547+ go_terms:GO:0005515 functional_description:"CP12 (AHRD V1 ***- O24136_TOBAC); contains Interpro domain(s) IPR003823 Protein of unknown function CP12 "; GO:0005515 NbS00039233g0006.1 protein AED:0.13 eAED:0.14 QI:0|0|0|0.66|0|0|3|0|461; (*GB) gi|147772248|emb|CAN78346.1| (e_value=8e-171) hypothetical protein VITISV_033453 [Vitis vinifera];; (*SWP) sp|Q680Z7|PPR24_ARATH (e_value=3e-134) Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1;; (*TAIR) AT1G09220.1 (e_value=2e-135) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:2977952-2979466 REVERSE LENGTH=504;; (*ITAG) Solyc06g009620.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:3579686-3581086 transcript_region:SL2.40ch06:3579686..3581086- go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3P7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00039418g0005.1 protein AED:0.21 eAED:0.21 QI:0|0|0|0.5|1|1|2|0|101; (*GB) gi|255551593|ref|XP_002516842.1| (e_value=1e-16) structural constituent of ribosome, putative [Ricinus communis];; (*TAIR) AT5G18790.1 (e_value=1e-18) | Symbols: | Ribosomal protein L33 family protein | chr5:6266324-6266500 REVERSE LENGTH=58;; (*ITAG) Solyc04g016390.1.1 (e_value=1e-24) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:7192698-7192880 transcript_region:SL2.40ch04:7192698..7192880+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L33 (AHRD V1 ***- B9RSX3_RICCO); contains Interpro domain(s) IPR001705 Ribosomal protein L33 "; GO:0005840 NbS00061749g0003.1 protein AED:0.34 eAED:0.34 QI:46|0.5|0.33|1|0.5|0.66|3|0|162; (*GB) gi|156070790|gb|ABU45202.1| (e_value=1e-42) unknown [Solanum bulbocastanum];; (*TAIR) AT5G65650.1 (e_value=6e-37) | Symbols: | Protein of unknown function (DUF1195) | chr5:26239588-26241195 FORWARD LENGTH=185;; (*ITAG) Solyc03g034090.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:10063965-10069238 transcript_region:SL2.40ch03:10063965..10069238+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00035797g0002.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|234; (*GB) gi|193237565|dbj|BAG50059.1| (e_value=2e-45) transcription factor AP2-EREBP [Lotus japonicus];; (*SWP) sp|O80337|EF100_ARATH (e_value=3e-45) Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2;; (*TAIR) AT4G17500.1 (e_value=2e-46) | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268;; (*ITAG) Solyc08g078180.1.1 (e_value=1e-84) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00035797g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|356540552|ref|XP_003538752.1| (e_value=2e-45) PREDICTED: ethylene-responsive transcription factor 1A-like [Glycine max];; (*SWP) sp|O80337|EF100_ARATH (e_value=1e-44) Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2;; (*TAIR) AT4G17500.1 (e_value=1e-45) | Symbols: ATERF-1, ERF-1 | ethylene responsive element binding factor 1 | chr4:9759405-9760211 FORWARD LENGTH=268;; (*ITAG) Solyc08g078180.1.1 (e_value=4e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:59176654-59177358 transcript_region:SL2.40ch08:59176654..59177358- go_terms:GO:0016563,GO:0003700 functional_description:"Ethylene-responsive transcription factor 1A (AHRD V1 **** A9P6A4_MEDTR); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003700 NbS00031940g0002.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|649; (*GB) gi|255573374|ref|XP_002527613.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*SWP) sp|Q9VSJ8|EXOC7_DROME (e_value=3e-12) Exocyst complex component 7 OS=Drosophila melanogaster GN=exo70 PE=1 SV=2;; (*TAIR) AT3G29400.1 (e_value=0.0) | Symbols: ATEXO70E1, EXO70E1 | exocyst subunit exo70 family protein E1 | chr3:11297339-11299315 REVERSE LENGTH=658;; (*ITAG) Solyc02g088800.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:45346206-45348185 transcript_region:SL2.40ch02:45346206..45348185- go_terms:GO:0005515 functional_description:"Exocyst complex component 7 (AHRD V1 *--- EXOC7_RAT); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00031940g0006.1 protein AED:0.31 eAED:0.31 QI:0|0.2|0.16|1|0.2|0.33|6|0|392; (*GB) gi|15822703|gb|AAL07518.1| (e_value=3e-34) RNA-binding protein precursor [Nicotiana tabacum];; (*TAIR) AT5G61030.1 (e_value=2e-18) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=5e-28) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbC23884425g0001.1 protein AED:0.07 eAED:0.17 QI:21|-1|0|1|-1|1|1|0|90; (*GB) gi|356529585|ref|XP_003533370.1| (e_value=3e-52) PREDICTED: lysine-specific histone demethylase 1 homolog 1-like [Glycine max];; (*SWP) sp|Q8VXV7|LDL1_ARATH (e_value=8e-45) Lysine-specific histone demethylase 1 homolog 1 OS=Arabidopsis thaliana GN=LDL1 PE=1 SV=1;; (*TAIR) AT1G62830.1 (e_value=6e-46) | Symbols: LDL1, SWP1, ATSWP1, ATLSD1, LSD1 | LSD1-like 1 | chr1:23264638-23267172 REVERSE LENGTH=844;; (*ITAG) Solyc11g008320.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2523911-2528684 transcript_region:SL2.40ch11:2523911..2528684- go_terms:GO:0003677 functional_description:"Lysine-specific histone demethylase 1 (AHRD V1 *--- B2WC79_PYRTR); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0003677 NbS00020514g0010.1 protein AED:0.22 eAED:0.32 QI:0|0.2|0.16|1|0.2|0.33|6|0|373; (*GB) gi|225429973|ref|XP_002281412.1| (e_value=9e-119) PREDICTED: probable peptide transporter At1g52190 [Vitis vinifera];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=2e-100) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=2e-101) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc05g006000.2.1 (e_value=7e-165) genomic_reference:SL2.40ch05 gene_region:742219-744379 transcript_region:SL2.40ch05:742219..744379+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00020514g0006.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.5|1|1|2|0|137; (*GB) gi|356565776|ref|XP_003551113.1| (e_value=6e-25) PREDICTED: probable peptide transporter At1g52190-like [Glycine max];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=7e-22) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=5e-23) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc04g005070.2.1 (e_value=5e-37) genomic_reference:SL2.40ch04 gene_region:59436-62839 transcript_region:SL2.40ch04:59436..62839- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00020514g0001.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.12|1|1|8|81|608; (*GB) gi|113205244|gb|AAT39318.2| (e_value=9e-40) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=4e-79) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00020514g0011.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|0|0|2|0|70 NbS00027474g0005.1 protein AED:0.31 eAED:0.33 QI:331|0.33|0.25|1|0.33|0.25|4|0|308; (*GB) gi|225425368|ref|XP_002270226.1| (e_value=4e-68) PREDICTED: squamosa promoter-binding-like protein 16 [Vitis vinifera];; (*SWP) sp|Q6YZE8|SPL16_ORYSJ (e_value=9e-21) Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1;; (*TAIR) AT5G50570.2 (e_value=2e-19) | Symbols: SPL13A, SPL13 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr5:20582555-20583791 REVERSE LENGTH=359;; (*ITAG) Solyc05g015840.2.1 (e_value=4e-117) genomic_reference:SL2.40ch05 gene_region:12394400-12397051 transcript_region:SL2.40ch05:12394400..12397051+ go_terms:GO:0005634 functional_description:"Squamosa promoter-binding protein (AHRD V1 ***- B8Y9B2_PONTR); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00020272g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.6|0.25|0.4|5|0|218; (*GB) gi|82621166|gb|ABB86271.1| (e_value=5e-64) adenine phosphoribosyltransferase-like [Solanum tuberosum];; (*SWP) sp|Q43199|APT1_WHEAT (e_value=5e-55) Adenine phosphoribosyltransferase 1 OS=Triticum aestivum GN=APT1 PE=2 SV=1;; (*TAIR) AT1G27450.1 (e_value=5e-55) | Symbols: APT1, ATAPT1 | adenine phosphoribosyl transferase 1 | chr1:9532042-9533807 FORWARD LENGTH=243;; (*ITAG) Solyc04g077970.2.1 (e_value=2e-63) genomic_reference:SL2.40ch04 gene_region:60430505-60435397 transcript_region:SL2.40ch04:60430505..60435397- go_terms:GO:0016208,GO:0003999 functional_description:"Adenine phosphoribosyltransferase-like (AHRD V1 **** Q2V997_SOLTU); contains Interpro domain(s) IPR005764 Adenine phosphoribosyl transferase "; GO:0016208,GO:0003999 NbS00020272g0006.1 protein AED:0.04 eAED:0.04 QI:79|1|1|1|0.8|0.66|6|712|327; (*GB) gi|328461717|gb|AEB15968.1| (e_value=3e-174) ABA 8'-hydroxylase CYPA4 variant 1 [Solanum tuberosum];; (*SWP) sp|Q9LJK2|ABAH4_ARATH (e_value=1e-150) Abscisic acid 8'-hydroxylase 4 OS=Arabidopsis thaliana GN=CYP707A4 PE=2 SV=2;; (*TAIR) AT3G19270.1 (e_value=1e-151) | Symbols: CYP707A4 | cytochrome P450, family 707, subfamily A, polypeptide 4 | chr3:6673885-6676400 REVERSE LENGTH=468;; (*ITAG) Solyc01g108210.2.1 (e_value=3e-174) genomic_reference:SL2.40ch01 gene_region:87331575-87335081 transcript_region:SL2.40ch01:87331575..87335081+ go_terms:GO:0010295 functional_description:"Cytochrome P450"; GO:0010295 NbS00008341g0001.1 protein AED:0.04 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|838; (*GB) gi|224141241|ref|XP_002323983.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O48837|LRKS2_ARATH (e_value=0.0) Receptor like protein kinase S.2 OS=Arabidopsis thaliana GN=LECRKS2 PE=2 SV=2;; (*TAIR) AT2G32800.1 (e_value=0.0) | Symbols: AP4.3A | protein kinase family protein | chr2:13916478-13919033 FORWARD LENGTH=851;; (*ITAG) Solyc09g091990.2.1 (e_value=4e-165) genomic_reference:SL2.40ch09 gene_region:66532632-66534277 transcript_region:SL2.40ch09:66532632..66534277+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM32_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008341g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0.2|1|0|0|5|0|221; (*GB) gi|224060383|ref|XP_002300172.1| (e_value=2e-103) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LRN6|CML22_ARATH (e_value=1e-72) Probable calcium-binding protein CML22 OS=Arabidopsis thaliana GN=CML22 PE=3 SV=1;; (*TAIR) AT3G24110.1 (e_value=1e-73) | Symbols: | Calcium-binding EF-hand family protein | chr3:8704429-8705413 REVERSE LENGTH=229;; (*ITAG) Solyc09g092020.2.1 (e_value=2e-116) genomic_reference:SL2.40ch09 gene_region:66535695-66538167 transcript_region:SL2.40ch09:66535695..66538167- go_terms:GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 *--* B2KTA0_WHEAT); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00008341g0003.1 protein AED:0.16 eAED:0.17 QI:0|0.57|0.5|0.87|1|1|8|390|280; (*GB) gi|255554128|ref|XP_002518104.1| (e_value=2e-120) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=9e-56) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT3G24120.1 (e_value=2e-103) | Symbols: | Homeodomain-like superfamily protein | chr3:8705925-8708148 REVERSE LENGTH=295;; (*ITAG) Solyc09g091880.2.1 (e_value=3e-150) genomic_reference:SL2.40ch09 gene_region:66442582-66446588 transcript_region:SL2.40ch09:66442582..66446588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00009238g0004.1 protein AED:0.26 eAED:0.27 QI:127|0.66|0.75|1|0|0.25|4|0|161; (*GB) gi|224094602|ref|XP_002310187.1| (e_value=3e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50830.1 (e_value=8e-56) | Symbols: COR413-PM2, ATCOR413-PM2 | cold-regulated 413-plasma membrane 2 | chr3:18894109-18895355 REVERSE LENGTH=203;; (*ITAG) Solyc01g109170.2.1 (e_value=4e-76) genomic_reference:SL2.40ch01 gene_region:87976877-87978822 transcript_region:SL2.40ch01:87976877..87978822+ functional_description:"Cold acclimation protein COR413-like (AHRD V1 ***- A6YDU6_LOLTE); contains Interpro domain(s) IPR008892 Cold acclimation WCOR413 "; NbS00039629g0001.1 protein AED:0.00 eAED:0.02 QI:111|1|0.5|1|0|0|2|0|106; (*GB) gi|224103355|ref|XP_002334063.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79660.1 (e_value=8e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:29976294-29976575 FORWARD LENGTH=93;; (*ITAG) Solyc12g042540.1.1 (e_value=6e-36) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:43333089-43333403 transcript_region:SL2.40ch12:43333089..43333403- functional_description:"Unknown Protein (AHRD V1)"; NbS00037852g0006.1 protein AED:0.20 eAED:0.21 QI:0|1|0.75|1|1|1|4|0|180; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=7e-123) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=2e-124) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=9e-97) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=1e-119) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00037852g0002.1 protein AED:0.00 eAED:0.00 QI:172|1|1|1|0|0.33|3|308|148; (*ITAG) Solyc03g034230.2.1 (e_value=4e-47) genomic_reference:SL2.40ch03 gene_region:10205170-10208243 transcript_region:SL2.40ch03:10205170..10208243- functional_description:"Unknown Protein (AHRD V1)"; NbS00058546g0003.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|608; (*GB) gi|50346889|gb|AAT75151.1| (e_value=0.0) 9-cis-epoxy-carotenoid dioxygenase 1 [Solanum tuberosum];; (*SWP) sp|Q9M6E8|NCED1_PHAVU (e_value=0.0) 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1;; (*TAIR) AT3G14440.1 (e_value=0.0) | Symbols: NCED3, ATNCED3, STO1, SIS7 | nine-cis-epoxycarotenoid dioxygenase 3 | chr3:4831678-4833477 REVERSE LENGTH=599;; (*ITAG) Solyc07g056570.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:61684846-61686663 transcript_region:SL2.40ch07:61684846..61686663- go_terms:GO:0045549 functional_description:"9-cis-epoxycarotenoid dioxygenase"; GO:0045549 NbS00039370g0005.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.57|1|0.33|0.42|7|241|442; (*GB) gi|350538585|ref|NP_001234862.1| (e_value=0.0) endo-1,4-beta-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|P22503|GUN_PHAVU (e_value=0.0) Endoglucanase OS=Phaseolus vulgaris PE=2 SV=2;; (*TAIR) AT4G09740.1 (e_value=3e-176) | Symbols: AtGH9B14, GH9B14 | glycosyl hydrolase 9B14 | chr4:6142706-6145003 REVERSE LENGTH=478;; (*ITAG) Solyc08g081620.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:61777928-61781480 transcript_region:SL2.40ch08:61777928..61781480- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0P7_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00039677g0008.1 protein AED:0.04 eAED:0.04 QI:177|1|1|1|1|1|6|624|320; (*GB) gi|224109896|ref|XP_002315347.1| (e_value=9e-126) predicted protein [Populus trichocarpa];; (*SWP) sp|Q2N2K1|PHYK1_SOYBN (e_value=2e-120) Probable phytol kinase 1, chloroplastic OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G04490.1 (e_value=2e-111) | Symbols: VTE5 | vitamin E pathway gene 5 | chr5:1279867-1281587 FORWARD LENGTH=304;; (*ITAG) Solyc03g071720.2.1 (e_value=3e-176) genomic_reference:SL2.40ch03 gene_region:41444357-41447680 transcript_region:SL2.40ch03:41444357..41447680+ go_terms:GO:0010276,GO:0004605 functional_description:"Phosphatidate cytidylyltransferase family protein expressed (AHRD V1 **-* Q2QYV3_ORYSJ); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0010276,GO:0004605 NbS00003043g0005.1 protein AED:0.16 eAED:0.16 QI:55|0.71|0.75|1|0.57|0.75|8|234|459; (*GB) gi|255553418|ref|XP_002517750.1| (e_value=0.0) serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|Q0WRX3|SCP40_ARATH (e_value=3e-178) Serine carboxypeptidase-like 40 OS=Arabidopsis thaliana GN=SCPL40 PE=2 SV=2;; (*TAIR) AT3G63470.1 (e_value=2e-179) | Symbols: scpl40 | serine carboxypeptidase-like 40 | chr3:23438561-23440862 FORWARD LENGTH=502;; (*ITAG) Solyc01g087970.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74571808-74577944 transcript_region:SL2.40ch01:74571808..74577944- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00031609g0004.1 protein AED:0.04 eAED:0.06 QI:566|0.4|0.5|1|0.4|0.5|6|177|944; (*GB) gi|147799140|emb|CAN70392.1| (e_value=1e-46) hypothetical protein VITISV_020518 [Vitis vinifera];; (*TAIR) AT3G24630.1 (e_value=1e-27) | Symbols: | unknown protein; Has 5348 Blast hits to 3182 proteins in 353 species: Archae - 0; Bacteria - 481; Metazoa - 1959; Fungi - 405; Plants - 180; Viruses - 10; Other Eukaryotes - 2313 (source: NCBI BLink). | chr3:8988398-8990737 FORWARD LENGTH=724;; (*ITAG) Solyc07g032710.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:40553149-40556921 transcript_region:SL2.40ch07:40553149..40556921- functional_description:"Genomic DNA chromosome 3 P1 clone MSD24 (AHRD V1 *-*- Q9LJ43_ARATH)"; NbC25159256g0001.1 protein AED:0.04 eAED:0.13 QI:31|1|0|1|0|0|2|0|91; (*GB) gi|147838046|emb|CAN65210.1| (e_value=2e-28) hypothetical protein VITISV_043548 [Vitis vinifera];; (*TAIR) AT5G12460.1 (e_value=3e-29) | Symbols: | Protein of unknown function (DUF604) | chr5:4043057-4044583 FORWARD LENGTH=441;; (*ITAG) Solyc11g065480.1.1 (e_value=3e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48003104-48006677 transcript_region:SL2.40ch11:48003104..48006677- functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RRC1_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; NbC23671296g0002.1 protein AED:0.17 eAED:0.17 QI:8|1|0.5|1|1|1|2|0|54; (*GB) gi|224114936|ref|XP_002316897.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94BM7|SPA4_ARATH (e_value=3e-17) Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1;; (*TAIR) AT1G53090.2 (e_value=2e-18) | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-19786690 FORWARD LENGTH=794;; (*ITAG) Solyc12g013840.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4630904-4638122 transcript_region:SL2.40ch12:4630904..4638122+ go_terms:GO:0006468 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0006468 NbS00054493g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc06g068890.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39102551-39102796 transcript_region:SL2.40ch06:39102551..39102796- functional_description:"Unknown Protein (AHRD V1)"; NbS00054493g0004.1 protein AED:0.26 eAED:0.26 QI:186|1|1|1|0.66|0.5|4|380|88; (*GB) gi|83755093|gb|ABC46407.1| (e_value=4e-34) knotted 1-binding protein 36 [Nicotiana tabacum];; (*TAIR) AT5G03050.1 (e_value=3e-22) | Symbols: | unknown protein; Has 33 Blast hits to 33 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:715302-715983 REVERSE LENGTH=140;; (*ITAG) Solyc03g118440.1.1 (e_value=7e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61375887-61376641 transcript_region:SL2.40ch03:61375887..61376641+ functional_description:"Knotted 1-binding protein 36 (AHRD V1 ***- A0S861_TOBAC)"; NbS00020956g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|198; (*GB) gi|359481983|ref|XP_002283401.2| (e_value=4e-51) PREDICTED: ethylene-responsive transcription factor ERF024 [Vitis vinifera];; (*SWP) sp|Q9SJR0|ERF24_ARATH (e_value=2e-41) Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1;; (*TAIR) AT2G36450.1 (e_value=1e-42) | Symbols: HRD | Integrase-type DNA-binding superfamily protein | chr2:15294303-15294857 REVERSE LENGTH=184;; (*ITAG) Solyc09g009240.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2617577-2618185 transcript_region:SL2.40ch09:2617577..2618185- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 13 (AHRD V1 *-** ERF99_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00020956g0003.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|449; (*GB) gi|297740074|emb|CBI30256.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD53|Y3720_ARATH (e_value=7e-90) UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1 SV=1;; (*TAIR) AT2G36430.1 (e_value=4e-180) | Symbols: | Plant protein of unknown function (DUF247) | chr2:15290211-15291557 FORWARD LENGTH=448;; (*ITAG) Solyc09g009230.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2614462-2617388 transcript_region:SL2.40ch09:2614462..2617388- functional_description:"AT5g22550/MQJ16_9 (AHRD V1 ***- Q940U3_ARATH); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00038372g0004.1 protein AED:0.09 eAED:0.09 QI:203|0.8|1|1|0.8|0.83|6|276|219; (*GB) gi|147837885|emb|CAN76047.1| (e_value=1e-63) hypothetical protein VITISV_037710 [Vitis vinifera];; (*TAIR) AT3G49645.1 (e_value=9e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18403129-18404427 REVERSE LENGTH=220;; (*ITAG) Solyc09g008680.2.1 (e_value=3e-104) genomic_reference:SL2.40ch09 gene_region:2128294-2131876 transcript_region:SL2.40ch09:2128294..2131876- functional_description:"FAD binding protein (AHRD V1 ***- B6TF47_MAIZE)"; NbS00028232g0003.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.66|3|0|172; (*GB) gi|357518603|ref|XP_003629590.1| (e_value=3e-66) 3-ketoacyl-CoA reductase [Medicago truncatula];; (*TAIR) AT3G50560.1 (e_value=6e-63) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:18761247-18763835 REVERSE LENGTH=272;; (*ITAG) Solyc02g065060.2.1 (e_value=2e-71) genomic_reference:SL2.40ch02 gene_region:30807914-30810710 transcript_region:SL2.40ch02:30807914..30810710+ go_terms:GO:0004745 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 **** D7LTG0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004745 NbS00004406g0001.1 protein AED:0.20 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|126; (*GB) gi|388501542|gb|AFK38837.1| (e_value=1e-24) unknown [Lotus japonicus];; (*TAIR) AT4G27810.1 (e_value=3e-13) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13854641-13855671 REVERSE LENGTH=196;; (*ITAG) Solyc01g096080.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:78952509-78954988 transcript_region:SL2.40ch01:78952509..78954988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037211g0004.1 protein AED:0.21 eAED:0.21 QI:0|0.45|0.66|1|0.81|0.66|12|545|596; (*GB) gi|224131204|ref|XP_002321026.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY16|PEX6_ARATH (e_value=0.0) Peroxisome biogenesis protein 6 OS=Arabidopsis thaliana GN=PEX6 PE=1 SV=1;; (*TAIR) AT1G03000.1 (e_value=0.0) | Symbols: PEX6 | peroxin 6 | chr1:688057-692453 REVERSE LENGTH=941;; (*ITAG) Solyc06g008730.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:2643190-2651308 transcript_region:SL2.40ch06:2643190..2651308- go_terms:GO:0042623,GO:0005200 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005200 NbS00003030g0001.1 protein AED:0.91 eAED:0.91 QI:0|0|0|0.2|1|1|5|0|68 NbS00021928g0011.1 protein AED:0.00 eAED:0.00 QI:175|0.5|0.66|1|1|1|3|168|171 NbS00021928g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|96; (*ITAG) Solyc00g013120.2.1 (e_value=8e-19) genomic_reference:SL2.40ch00 gene_region:10672277-10673169 transcript_region:SL2.40ch00:10672277..10673169- functional_description:"Uncharacterized mitochondrial protein AtMg01330 (AHRD V1 *-*- M1330_ARATH)"; NbS00021928g0020.1 protein AED:0.87 eAED:0.87 QI:0|0|0|0.66|0|0.33|3|0|195 NbS00021928g0018.1 protein AED:0.44 eAED:0.85 QI:0|0|0|0.8|0|0|5|0|293; (*GB) gi|357436153|ref|XP_003588352.1| (e_value=4e-41) NADH dehydrogenase subunit [Medicago truncatula];; (*SWP) sp|P15688|NU2M_BETVU (e_value=8e-12) NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2; NbS00021928g0019.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|4|0|164; (*GB) gi|57013955|ref|YP_173427.1| (e_value=5e-52) hypothetical protein NitaMp087 [Nicotiana tabacum];; (*SWP) sp|O05000|NU2M_ARATH (e_value=2e-37) NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2;; (*TAIR) AT2G07689.1 (e_value=6e-51) | Symbols: | NADH-Ubiquinone/plastoquinone (complex I) protein | chr2:3336109-3336753 FORWARD LENGTH=214;; (*ITAG) Solyc00g125990.1.1 (e_value=9e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:16638276-16638920 transcript_region:SL2.40ch00:16638276..16638920+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- B1LUM3_METRJ); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00021928g0016.1 protein AED:0.12 eAED:0.41 QI:51|0|0|1|0|0|3|0|140; (*GB) gi|147810332|emb|CAN73913.1| (e_value=2e-23) hypothetical protein VITISV_035231 [Vitis vinifera];; (*SWP) sp|Q9LK50|AB26G_ARATH (e_value=6e-20) ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=2;; (*TAIR) AT3G13220.1 (e_value=4e-21) | Symbols: WBC27, ABCG26 | ABC-2 type transporter family protein | chr3:4247968-4250703 REVERSE LENGTH=685;; (*ITAG) Solyc07g065770.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00048595g0002.1 protein AED:0.01 eAED:0.01 QI:35|0.75|0.6|1|0.75|0.8|5|284|263; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=5e-36) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00048595g0012.1 protein AED:0.16 eAED:0.16 QI:212|1|1|1|0.66|0.9|10|225|390; (*GB) gi|255584858|ref|XP_002533145.1| (e_value=0.0) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q5HZ05|TPPJ_ARATH (e_value=8e-175) Probable trehalose-phosphate phosphatase J OS=Arabidopsis thaliana GN=TPPJ PE=1 SV=1;; (*TAIR) AT5G65140.1 (e_value=6e-176) | Symbols: TPPJ | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:26019878-26022077 REVERSE LENGTH=370;; (*ITAG) Solyc04g054930.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52586264-52589099 transcript_region:SL2.40ch04:52586264..52589099- go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose-6-phosphate phosphatase-like protein (AHRD V1 ***- Q9LX18_ARATH); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00003551g0016.1 protein AED:0.02 eAED:0.06 QI:0|0.33|0|1|0|0.25|4|0|291; (*GB) gi|255541005|ref|XP_002511567.1| (e_value=2e-121) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*SWP) sp|Q9ZWQ9|FLS_CITUN (e_value=7e-27) Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1;; (*TAIR) AT4G10490.1 (e_value=1e-25) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:6483900-6485179 FORWARD LENGTH=348;; (*ITAG) Solyc03g116260.2.1 (e_value=2e-129) genomic_reference:SL2.40ch03 gene_region:59816914-59818332 transcript_region:SL2.40ch03:59816914..59818332+ go_terms:GO:0016707 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* G2OX7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016707 NbS00003551g0004.1 protein AED:0.07 eAED:0.07 QI:867|0.66|0.85|1|0.83|0.71|7|395|295; (*GB) gi|356524876|ref|XP_003531054.1| (e_value=2e-149) PREDICTED: tRNA guanosine-2'-O-methyltransferase TRM11 homolog [Glycine max];; (*SWP) sp|Q6NS23|TRM11_XENLA (e_value=3e-45) tRNA (guanine(10)-N2)-methyltransferase homolog OS=Xenopus laevis GN=trmt11 PE=2 SV=1;; (*TAIR) AT3G26410.1 (e_value=1e-143) | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic acid binding | chr3:9669508-9671273 REVERSE LENGTH=477;; (*ITAG) Solyc10g047120.1.1 (e_value=6e-168) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35318939-35325054 transcript_region:SL2.40ch10:35318939..35325054- go_terms:GO:0005515,GO:0004809 functional_description:"tRNA guanosine-2'-O-methyltransferase TRM11 homolog (AHRD V1 **** TRM11_MOUSE); contains Interpro domain(s) IPR016691 tRNA guanosine-2'-O-methyltransferase, TRM11 "; GO:0005515,GO:0004809 NbS00003551g0015.1 protein AED:0.37 eAED:0.37 QI:74|0.33|0.5|1|0.33|0.5|4|71|159; (*GB) gi|261351264|gb|ACX71299.1| (e_value=2e-37) RNA-binding protein RZ-1 [Capsicum annuum];; (*SWP) sp|Q43472|GRP_HORVU (e_value=2e-23) Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1;; (*TAIR) AT3G26420.1 (e_value=3e-36) | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:9671953-9673055 FORWARD LENGTH=245;; (*ITAG) Solyc10g047130.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:35339896-35342026 transcript_region:SL2.40ch10:35339896..35342026+ go_terms:GO:0003690,GO:0043047 functional_description:"RNA-binding protein RZ-1 (AHRD V1 **** D0V0M9_CAPAN); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003690,GO:0043047 NbS00019781g0008.1 protein AED:0.04 eAED:0.06 QI:54|0|0|0.8|0.55|0.5|10|0|861; (*GB) gi|255545438|ref|XP_002513779.1| (e_value=1e-174) RNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q8CI75|DI3L2_MOUSE (e_value=2e-84) DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1;; (*TAIR) AT1G77680.1 (e_value=3e-153) | Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055;; (*ITAG) Solyc11g013030.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00053036g0001.1 protein AED:0.03 eAED:0.03 QI:243|1|1|1|0|0|2|857|102; (*GB) gi|330318756|gb|AEC11038.1| (e_value=3e-16) hypothetical protein [Camellia sinensis];; (*SWP) sp|Q9FKD9|SINL6_ARATH (e_value=3e-15) Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1;; (*TAIR) AT5G37870.1 (e_value=2e-16) | Symbols: | Protein with RING/U-box and TRAF-like domains | chr5:15073764-15074851 REVERSE LENGTH=281;; (*ITAG) Solyc03g034450.2.1 (e_value=2e-22) genomic_reference:SL2.40ch03 gene_region:10682892-10686321 transcript_region:SL2.40ch03:10682892..10686321+ go_terms:GO:0016567,GO:0005634,GO:0008270 functional_description:"E3 ubiquitin-protein ligase sina (AHRD V1 ***- B0WR23_CULQU); contains Interpro domain(s) IPR004162 Seven in absentia protein "; GO:0016567,GO:0005634,GO:0008270 NbS00024881g0007.1 protein AED:0.13 eAED:0.13 QI:726|0.81|0.64|1|0.68|0.82|17|0|1100; (*GB) gi|359476152|ref|XP_002282819.2| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera];; (*SWP) sp|O04716|MSH6_ARATH (e_value=9e-14) DNA mismatch repair protein Msh6-1 OS=Arabidopsis thaliana GN=MSH6-1 PE=2 SV=2;; (*TAIR) AT1G15940.1 (e_value=5e-34) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr1:5473672-5478050 FORWARD LENGTH=990;; (*ITAG) Solyc03g117010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60323253-60335993 transcript_region:SL2.40ch03:60323253..60335993- functional_description:"Sister chromatid cohesion protein PDS5 homolog B (AHRD V1 *--- PDS5B_RAT)"; NbS00050535g0003.1 protein AED:0.14 eAED:0.14 QI:205|1|0.87|1|0.71|0.87|8|0|788; (*GB) gi|255565101|ref|XP_002523543.1| (e_value=0.0) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q06AK6|TFP11_PIG (e_value=1e-11) Tuftelin-interacting protein 11 OS=Sus scrofa GN=TFIP11 PE=2 SV=1;; (*TAIR) AT3G09850.1 (e_value=8e-129) | Symbols: | D111/G-patch domain-containing protein | chr3:3023397-3025742 REVERSE LENGTH=781;; (*ITAG) Solyc07g007040.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:1819149-1827662 transcript_region:SL2.40ch07:1819149..1827662- go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger CCCH-type with G patch domain-containing protein (AHRD V1 *--- ZGPAT_NEMVE); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0003676,GO:0005622 NbS00024623g0003.1 protein AED:0.18 eAED:0.18 QI:1147|0.75|0.6|1|0.5|0.6|5|0|300; (*GB) gi|224108433|ref|XP_002314845.1| (e_value=8e-105) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C5E2|Y1839_ARATH (e_value=3e-81) Probable serine/threonine-protein kinase At1g18390 OS=Arabidopsis thaliana GN=At1g18390 PE=1 SV=2;; (*TAIR) AT1G25390.1 (e_value=3e-91) | Symbols: | Protein kinase superfamily protein | chr1:8906640-8908800 REVERSE LENGTH=629;; (*ITAG) Solyc04g007390.2.1 (e_value=3e-150) genomic_reference:SL2.40ch04 gene_region:1078962-1080280 transcript_region:SL2.40ch04:1078962..1080280- go_terms:GO:0046982,GO:0004674 functional_description:"Serine/threonine protein kinase family protein (AHRD V1 **** C6ZRM5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0046982,GO:0004674 NbC25964675g0004.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|0|0.5|2|0|125; (*GB) gi|161788876|dbj|BAF95072.1| (e_value=1e-84) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42055|VDAC1_SOLTU (e_value=5e-82) Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT3G01280.1 (e_value=6e-63) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276;; (*ITAG) Solyc02g067460.2.1 (e_value=3e-83) genomic_reference:SL2.40ch02 gene_region:32236994-32239690 transcript_region:SL2.40ch02:32236994..32239690+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00006499g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.4|0.8|1|1|5|0|219; (*GB) gi|1196796|gb|AAC41680.1| (e_value=1e-155) protein kinase p34cdc2 [Petroselinum crispum];; (*SWP) sp|Q38772|CDC2A_ANTMA (e_value=8e-157) Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2;; (*TAIR) AT3G48750.1 (e_value=8e-151) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc08g066330.1.1 (e_value=4e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52077877-52083689 transcript_region:SL2.40ch08:52077877..52083689+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00022804g0009.1 protein AED:0.06 eAED:0.06 QI:266|1|0.72|1|0.9|0.90|11|0|827; (*GB) gi|359484485|ref|XP_002279676.2| (e_value=5e-44) PREDICTED: uncharacterized protein LOC100250764 [Vitis vinifera];; (*TAIR) AT5G56850.1 (e_value=3e-28) | Symbols: | unknown protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:22985432-22987977 REVERSE LENGTH=551;; (*ITAG) Solyc07g039190.2.1 (e_value=2e-125) genomic_reference:SL2.40ch07 gene_region:42878759-42882589 transcript_region:SL2.40ch07:42878759..42882589- functional_description:"Unknown Protein (AHRD V1)"; NbS00022819g0009.1 protein AED:0.07 eAED:0.08 QI:0|0.66|0.5|1|1|1|4|0|262; (*GB) gi|225439086|ref|XP_002265705.1| (e_value=2e-58) PREDICTED: uncharacterized protein LOC100255300 [Vitis vinifera];; (*TAIR) AT1G30050.1 (e_value=9e-56) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 246 Blast hits to 244 proteins in 61 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 10; Plants - 117; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr1:10543177-10544418 FORWARD LENGTH=389;; (*ITAG) Solyc10g074800.1.1 (e_value=2e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:57836904-57839499 transcript_region:SL2.40ch10:57836904..57839499+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022819g0008.1 protein AED:0.23 eAED:0.23 QI:317|1|1|1|0.9|0.81|11|449|425; (*GB) gi|255582036|ref|XP_002531815.1| (e_value=0.0) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT5G01990.1 (e_value=0.0) | Symbols: | Auxin efflux carrier family protein | chr5:377373-379600 REVERSE LENGTH=431;; (*ITAG) Solyc10g074790.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57831763-57835787 transcript_region:SL2.40ch10:57831763..57835787+ go_terms:GO:0016021 functional_description:"Auxin efflux carrier family protein (AHRD V1 ***- D7M6D2_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0016021 NbS00022819g0010.1 protein AED:0.24 eAED:0.24 QI:249|1|0.88|1|0.87|0.66|9|0|479; (*GB) gi|225439088|ref|XP_002265744.1| (e_value=0.0) PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Vitis vinifera];; (*SWP) sp|Q96EX2|RNFT2_HUMAN (e_value=1e-34) RING finger and transmembrane domain-containing protein 2 OS=Homo sapiens GN=RNFT2 PE=2 SV=2;; (*TAIR) AT5G01960.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc10g074810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57843108-57849636 transcript_region:SL2.40ch10:57843108..57849636+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger and transmembrane domain-containing protein 2 (AHRD V1 **-- RNFT2_HUMAN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00004419g0002.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0|2|66|516; (*GB) gi|71897452|gb|AAZ52550.1| (e_value=0.0) cytochrome P450 [Capsicum annuum];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=5e-172) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT1G64940.1 (e_value=0.0) | Symbols: CYP89A6 | cytochrome P450, family 87, subfamily A, polypeptide 6 | chr1:24123789-24125324 FORWARD LENGTH=511;; (*ITAG) Solyc03g096990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52800830-52805612 transcript_region:SL2.40ch03:52800830..52805612+ go_terms:GO:0019825 functional_description:"Cytochrome P450 89A2 (AHRD V1 ***- C89A2_ARATH); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0019825 NbS00004419g0001.1 protein AED:0.27 eAED:0.33 QI:0|0.5|0.57|0.85|1|1|7|1173|244; (*GB) gi|357503753|ref|XP_003622165.1| (e_value=1e-67) ABC transporter I family member [Medicago truncatula];; (*SWP) sp|Q8LEF6|AB11I_ARATH (e_value=6e-60) ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1;; (*TAIR) AT5G14100.1 (e_value=5e-61) | Symbols: ATNAP14, NAP14 | non-intrinsic ABC protein 14 | chr5:4549706-4551632 REVERSE LENGTH=278;; (*ITAG) Solyc02g068180.2.1 (e_value=1e-84) genomic_reference:SL2.40ch02 gene_region:32778437-32785527 transcript_region:SL2.40ch02:32778437..32785527+ go_terms:GO:0015421 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- D4QI89_ENTFC); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015421 NbS00011679g0002.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|40557129|gb|AAR87851.1| (e_value=7e-71) fertilization-related kinase 2 [Solanum chacoense];; (*SWP) sp|O14299|WIS4_SCHPO (e_value=3e-26) MAP kinase kinase kinase wis4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=wis4 PE=2 SV=1;; (*TAIR) AT5G67080.1 (e_value=2e-43) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc06g065660.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37458149-37459126 transcript_region:SL2.40ch06:37458149..37459126+ go_terms:GO:0004708 functional_description:"MAP protein kinase (AHRD V1 **** Q9FKZ5_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004708 NbS00011679g0003.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|87 NbS00011679g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|88; (*ITAG) Solyc08g005380.1.1 (e_value=4e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:286490-286957 transcript_region:SL2.40ch08:286490..286957+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053736g0004.1 protein AED:0.00 eAED:0.00 QI:115|1|1|1|1|1|4|1334|353; (*GB) gi|117646985|dbj|BAF36564.1| (e_value=0.0) alternative oxidase [Nicotiana tabacum];; (*SWP) sp|Q41224|AOX1_TOBAC (e_value=0.0) Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1;; (*TAIR) AT3G22370.1 (e_value=0.0) | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A | chr3:7906890-7908416 FORWARD LENGTH=354;; (*ITAG) Solyc08g075540.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:56877798-56879604 transcript_region:SL2.40ch08:56877798..56879604- go_terms:GO:0009916 functional_description:"Alternative oxidase (AHRD V1 **** Q84V47_SOLLC); contains Interpro domain(s) IPR002680 Alternative oxidase "; GO:0009916 NbS00010126g0013.1 protein AED:0.15 eAED:0.15 QI:1223|0.75|0.6|1|0.5|0.6|5|0|230; (*GB) gi|255583962|ref|XP_002532728.1| (e_value=3e-121) ptm1, putative [Ricinus communis];; (*SWP) sp|Q28EW0|TM87A_XENTR (e_value=8e-25) Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1;; (*TAIR) AT1G72480.1 (e_value=2e-111) | Symbols: | Lung seven transmembrane receptor family protein | chr1:27286304-27288339 REVERSE LENGTH=509;; (*ITAG) Solyc12g049390.1.1 (e_value=1e-138) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:46392532-46399309 transcript_region:SL2.40ch12:46392532..46399309+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00028359g0004.1 protein AED:0.07 eAED:0.09 QI:135|0|0.5|1|0|0|2|0|1129; (*GB) gi|13620226|emb|CAC36401.1| (e_value=0.0) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q9ZWC8|BRL1_ARATH (e_value=0.0) Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1;; (*TAIR) AT1G55610.2 (e_value=0.0) | Symbols: BRL1 | BRI1 like | chr1:20779874-20783374 REVERSE LENGTH=1166;; (*ITAG) Solyc07g066230.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64932923-64936722 transcript_region:SL2.40ch07:64932923..64936722- go_terms:GO:0042802,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0042802,GO:0004675 NbS00007750g0013.1 protein AED:0.11 eAED:0.11 QI:202|1|1|1|1|1|3|782|120; (*GB) gi|76161010|gb|ABA40468.1| (e_value=2e-37) Drm3-like protein [Solanum tuberosum];; (*TAIR) AT1G56220.3 (e_value=5e-19) | Symbols: | Dormancy/auxin associated family protein | chr1:21043414-21044469 FORWARD LENGTH=140;; (*ITAG) Solyc01g099840.2.1 (e_value=6e-42) genomic_reference:SL2.40ch01 gene_region:81745463-81747550 transcript_region:SL2.40ch01:81745463..81747550+ functional_description:"Auxin-repressed protein (AHRD V1 ***- B4FA62_MAIZE); contains Interpro domain(s) IPR008406 Dormancyauxin associated "; NbS00007750g0012.1 protein AED:0.33 eAED:0.33 QI:144|1|1|1|0.5|0.33|3|181|124; (*GB) gi|224064448|ref|XP_002301481.1| (e_value=2e-54) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9W1|RL222_ARATH (e_value=3e-53) 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1;; (*TAIR) AT3G05560.3 (e_value=2e-54) | Symbols: | Ribosomal L22e protein family | chr3:1614641-1615204 FORWARD LENGTH=124;; (*ITAG) Solyc01g099830.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:81721206-81723201 transcript_region:SL2.40ch01:81721206..81723201+ go_terms:GO:0003735,GO:0008201 functional_description:"60S ribosomal protein L22-2 (AHRD V1 ***- D7L3W0_ARALY); contains Interpro domain(s) IPR002671 Ribosomal protein L22e "; GO:0003735,GO:0008201 NbS00007750g0014.1 protein AED:0.40 eAED:0.40 QI:0|0.75|0.6|1|0.75|0.6|5|0|199; (*GB) gi|351723391|ref|NP_001237789.1| (e_value=4e-117) uncharacterized protein LOC100500164 [Glycine max];; (*SWP) sp|P42791|RL182_ARATH (e_value=1e-110) 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2;; (*TAIR) AT3G05590.1 (e_value=8e-112) | Symbols: RPL18 | ribosomal protein L18 | chr3:1621511-1622775 FORWARD LENGTH=187;; (*ITAG) Solyc01g099900.2.1 (e_value=3e-121) genomic_reference:SL2.40ch01 gene_region:81786875-81789836 transcript_region:SL2.40ch01:81786875..81789836+ go_terms:GO:0003735,GO:0003723 functional_description:"Ribosomal protein L18 (AHRD V1 ***- C5X0Q5_SORBI); contains Interpro domain(s) IPR000039 Ribosomal protein L18e "; GO:0003735,GO:0003723 NbS00007750g0021.1 protein AED:0.05 eAED:0.05 QI:24|0.8|0.66|1|0.8|0.66|6|55|307; (*GB) gi|62255525|gb|AAX78199.1| (e_value=0.0) putative annexin [Nicotiana tabacum];; (*SWP) sp|P51074|ANX4_FRAAN (e_value=7e-137) Annexin-like protein RJ4 OS=Fragaria ananassa PE=2 SV=2;; (*TAIR) AT5G12380.1 (e_value=6e-120) | Symbols: ANNAT8 | annexin 8 | chr5:4009223-4010687 FORWARD LENGTH=316;; (*ITAG) Solyc10g044690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:22967339-22968920 transcript_region:SL2.40ch10:22967339..22968920+ go_terms:GO:0019834 functional_description:"Annexin (AHRD V1 ***- D2D2Z9_GOSHI); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0019834 NbS00007750g0015.1 protein AED:0.32 eAED:0.32 QI:0|1|0.66|1|1|1|3|0|311; (*GB) gi|15230010|ref|NP_187209.1| (e_value=0.0) serine/threonine-protein phosphatase PP1 isozyme 9 [Arabidopsis thaliana];; (*SWP) sp|Q9M9W3|PP19_ARATH (e_value=0.0) Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1;; (*TAIR) AT3G05580.1 (e_value=0.0) | Symbols: | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:1618216-1619850 REVERSE LENGTH=318;; (*ITAG) Solyc01g099860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81754501-81757239 transcript_region:SL2.40ch01:81754501..81757239- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q84T16_PHAAT); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00010458g0007.1 protein AED:0.21 eAED:0.21 QI:0|1|0.87|1|0.85|0.75|8|230|720; (*GB) gi|3044212|gb|AAC13497.1| (e_value=0.0) acyl-CoA oxidase [Arabidopsis thaliana];; (*SWP) sp|O65201|ACOX2_ARATH (e_value=0.0) Acyl-coenzyme A oxidase 2, peroxisomal OS=Arabidopsis thaliana GN=ACX2 PE=1 SV=2;; (*TAIR) AT5G65110.1 (e_value=0.0) | Symbols: ACX2, ATACX2 | acyl-CoA oxidase 2 | chr5:26009821-26012482 REVERSE LENGTH=692;; (*ITAG) Solyc04g054890.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52506991-52511567 transcript_region:SL2.40ch04:52506991..52511567- go_terms:GO:0016402 functional_description:"Acyl-CoA oxidase (AHRD V1 **** D7MT79_ARALY); contains Interpro domain(s) IPR012258 Acyl-CoA oxidase "; GO:0016402 NbS00010458g0010.1 protein AED:0.08 eAED:0.09 QI:0|1|0.6|1|0.75|1|5|0|708; (*GB) gi|356528485|ref|XP_003532833.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100789264 [Glycine max];; (*TAIR) AT4G39790.1 (e_value=7e-178) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr4:18462316-18464584 REVERSE LENGTH=657;; (*ITAG) Solyc04g054880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52498767-52506226 transcript_region:SL2.40ch04:52498767..52506226+ functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00058471g0007.1 protein AED:0.35 eAED:0.35 QI:0|0.5|0.33|1|0.5|0.66|3|0|297; (*GB) gi|225434030|ref|XP_002273888.1| (e_value=3e-69) PREDICTED: uncharacterized protein LOC100247465 [Vitis vinifera];; (*SWP) sp|Q9FJ54|CIPKK_ARATH (e_value=3e-22) CBL-interacting serine/threonine-protein kinase 20 OS=Arabidopsis thaliana GN=CIPK20 PE=1 SV=1;; (*TAIR) AT5G62270.1 (e_value=1e-55) | Symbols: | BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25012227-25014007 FORWARD LENGTH=383;; (*ITAG) Solyc05g056510.2.1 (e_value=2e-109) genomic_reference:SL2.40ch05 gene_region:64919063-64924412 transcript_region:SL2.40ch05:64919063..64924412+ functional_description:"Mucin-like protein (AHRD V1 ***- Q8S2G4_ORYSJ)"; NbS00058471g0006.1 protein AED:0.43 eAED:0.55 QI:0|0.16|0.14|0.85|0.33|0.57|7|0|277; (*GB) gi|225434030|ref|XP_002273888.1| (e_value=1e-64) PREDICTED: uncharacterized protein LOC100247465 [Vitis vinifera];; (*TAIR) AT5G62270.1 (e_value=5e-52) | Symbols: | BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25012227-25014007 FORWARD LENGTH=383;; (*ITAG) Solyc05g056510.2.1 (e_value=2e-77) genomic_reference:SL2.40ch05 gene_region:64919063-64924412 transcript_region:SL2.40ch05:64919063..64924412+ functional_description:"Mucin-like protein (AHRD V1 ***- Q8S2G4_ORYSJ)"; NbS00056071g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|2145023|gb|AAB58402.1| (e_value=4e-52) 15.5 kDa oleosin [Sesamum indicum];; (*SWP) sp|Q39165|OLEO2_ARATH (e_value=9e-37) Oleosin 21.2 kDa OS=Arabidopsis thaliana GN=At5g40420 PE=1 SV=1;; (*TAIR) AT5G40420.1 (e_value=7e-38) | Symbols: OLEO2, OLE2 | oleosin 2 | chr5:16173622-16174740 REVERSE LENGTH=199;; (*ITAG) Solyc03g112440.1.1 (e_value=1e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56898083-56898544 transcript_region:SL2.40ch03:56898083..56898544+ go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- O04925_SESIN); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00052218g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.8|0.5|1|0.8|0.83|6|0|410; (*GB) gi|4753845|emb|CAB41987.1| (e_value=0.0) FtsZ-like protein [Nicotiana tabacum];; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=1e-179) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=0.0) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00052218g0008.1 protein AED:0.01 eAED:0.20 QI:0|0|0|1|0|0|3|0|383; (*GB) gi|225460821|ref|XP_002276950.1| (e_value=9e-92) PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Vitis vinifera];; (*SWP) sp|Q9SV07|ASAT1_ARATH (e_value=1e-57) Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1;; (*TAIR) AT3G51970.1 (e_value=1e-58) | Symbols: ATSAT1, ASAT1, ATASAT1 | acyl-CoA sterol acyl transferase 1 | chr3:19284420-19285457 FORWARD LENGTH=345;; (*ITAG) Solyc07g065060.1.1 (e_value=1e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:64205975-64207009 transcript_region:SL2.40ch07:64205975..64207009- go_terms:GO:0005515,GO:0008415 functional_description:"Wax synthase isoform 3 (AHRD V1 ***- Q84XY7_VITVI)"; GO:0005515,GO:0008415 NbC24702934g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|106; (*GB) gi|224143753|ref|XP_002325062.1| (e_value=1e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57500.1 (e_value=8e-67) | Symbols: | Galactosyltransferase family protein | chr5:23286406-23287525 REVERSE LENGTH=318;; (*ITAG) Solyc07g018200.1.1 (e_value=3e-71) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:9698942-9699901 transcript_region:SL2.40ch07:9698942..9699901+ go_terms:GO:0016020 functional_description:"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 (AHRD V1 *--- B3GN5_RAT); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00018842g0002.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|197; (*ITAG) Solyc01g103470.2.1 (e_value=2e-42) genomic_reference:SL2.40ch01 gene_region:83830816-83831855 transcript_region:SL2.40ch01:83830816..83831855- functional_description:"Unknown Protein (AHRD V1)"; NbS00018842g0007.1 protein AED:0.32 eAED:0.38 QI:0|0.63|0.66|1|0.72|0.83|12|220|596; (*GB) gi|147770771|emb|CAN60953.1| (e_value=0.0) hypothetical protein VITISV_008875 [Vitis vinifera];; (*SWP) sp|Q93Y22|COPD_ARATH (e_value=0.0) Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1 SV=2;; (*TAIR) AT5G05010.2 (e_value=0.0) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr5:1477137-1479872 FORWARD LENGTH=527;; (*ITAG) Solyc01g103480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83833887-83841434 transcript_region:SL2.40ch01:83833887..83841434- go_terms:GO:0005515 functional_description:"Coatomer subunit delta (AHRD V1 ***- B6TDR8_MAIZE); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0005515 NbS00018842g0003.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|130; (*GB) gi|255573515|ref|XP_002527682.1| (e_value=2e-33) 3-5 exonuclease, putative [Ricinus communis];; (*ITAG) Solyc01g103460.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:83828730-83829803 transcript_region:SL2.40ch01:83828730..83829803+ go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 ***- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00016992g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|869; (*GB) gi|356600306|gb|AET22504.1| (e_value=1e-155) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L400|R1B16_SOLDE (e_value=1e-102) Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1;; (*TAIR) AT3G46530.1 (e_value=7e-74) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc11g006630.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1237304-1240179 transcript_region:SL2.40ch11:1237304..1240179+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00016992g0010.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.8|1|0.75|0.6|5|0|249; (*GB) gi|1346736|sp|P49173.1|NIP1_NICAL (e_value=3e-114) RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein;; (*SWP) sp|P49173|NIP1_NICAL (e_value=8e-116) Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1;; (*TAIR) AT5G37820.1 (e_value=8e-107) | Symbols: NIP4;2, NLM5 | NOD26-like intrinsic protein 4;2 | chr5:15050261-15051542 FORWARD LENGTH=283;; (*ITAG) Solyc05g008080.1.1 (e_value=7e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2503662-2506273 transcript_region:SL2.40ch05:2503662..2506273+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- B3GK86_ARATH); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00016992g0009.1 protein AED:0.23 eAED:0.23 QI:165|1|1|1|0.66|0.57|7|359|170; (*GB) gi|224108323|ref|XP_002314805.1| (e_value=1e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6Z2|NUD25_ARATH (e_value=6e-99) Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1;; (*TAIR) AT1G30110.2 (e_value=4e-100) | Symbols: NUDX25 | nudix hydrolase homolog 25 | chr1:10582700-10583821 FORWARD LENGTH=175;; (*ITAG) Solyc05g008000.2.1 (e_value=4e-111) genomic_reference:SL2.40ch05 gene_region:2429400-2433589 transcript_region:SL2.40ch05:2429400..2433589+ go_terms:GO:0004081,GO:0034432 functional_description:"RNA pyrophosphohydrolase (AHRD V1 ***- C9CZW5_9RHOB); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0004081,GO:0034432 NbS00042373g0002.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|479; (*GB) gi|147862319|emb|CAN83589.1| (e_value=0.0) hypothetical protein VITISV_022074 [Vitis vinifera];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=6e-107) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT5G58950.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23801136-23803025 REVERSE LENGTH=525;; (*ITAG) Solyc03g006400.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:996867-999265 transcript_region:SL2.40ch03:996867..999265- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q39886_SOYBN); contains Interpro domain(s) IPR001245 Tyrosine protein kinase "; GO:0006468 NbS00049407g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|222|104; (*GB) gi|224060979|ref|XP_002300305.1| (e_value=7e-14) predicted protein [Populus trichocarpa]; NbS00049407g0015.1 protein AED:0.21 eAED:0.28 QI:412|0.25|0.4|1|0.25|0.4|5|0|443; (*GB) gi|225455274|ref|XP_002273720.1| (e_value=1e-131) PREDICTED: small G protein signaling modulator 2-like isoform 2 [Vitis vinifera];; (*TAIR) AT3G49350.1 (e_value=2e-86) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539;; (*ITAG) Solyc06g053190.2.1 (e_value=2e-171) genomic_reference:SL2.40ch06 gene_region:32408377-32414109 transcript_region:SL2.40ch06:32408377..32414109- go_terms:GO:0005622 functional_description:"GTPase activating-like protein (AHRD V1 **-- Q9SG14_ARATH); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00049407g0016.1 protein AED:0.32 eAED:0.32 QI:0|1|1|1|1|1|5|405|392; (*GB) gi|225455284|ref|XP_002271615.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100264007 [Vitis vinifera];; (*SWP) sp|B4F6J6|ATAD1_XENTR (e_value=5e-99) ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis GN=atad1 PE=2 SV=2;; (*TAIR) AT4G27680.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13821263-13823083 FORWARD LENGTH=398;; (*ITAG) Solyc06g053160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00049407g0004.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|224132670|ref|XP_002321380.1| (e_value=6e-95) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9P6Q3|BCS1_SCHPO (e_value=9e-21) Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1;; (*TAIR) AT2G46620.1 (e_value=4e-92) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19139071-19140546 REVERSE LENGTH=491;; (*ITAG) Solyc06g053150.1.1 (e_value=4e-109) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:32367721-32369259 transcript_region:SL2.40ch06:32367721..32369259- go_terms:GO:0005524,GO:0017111 functional_description:"ATPase AAA family protein expressed (AHRD V1 **-- Q8GZX0_ORYSJ); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00049407g0017.1 protein AED:0.26 eAED:0.26 QI:276|1|1|1|1|1|3|243|134; (*GB) gi|351726704|ref|NP_001235088.1| (e_value=9e-81) uncharacterized protein LOC100305929 [Glycine max];; (*SWP) sp|Q42342|CYB51_ARATH (e_value=9e-76) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT5G53560.1 (e_value=6e-77) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc03g082600.2.1 (e_value=6e-84) genomic_reference:SL2.40ch03 gene_region:46071440-46075109 transcript_region:SL2.40ch03:46071440..46075109- go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** A5Z1Y7_MALDO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00005985g0007.1 protein AED:0.25 eAED:0.27 QI:0|0.71|0.62|1|0.71|0.75|8|0|1213; (*GB) gi|374095601|gb|AEY85028.1| (e_value=0.0) putative ATP-binding protein [Camellia sinensis];; (*SWP) sp|Q54BC9|DYRK2_DICDI (e_value=2e-59) Probable serine/threonine-protein kinase dyrk2 OS=Dictyostelium discoideum GN=dyrk2 PE=3 SV=1;; (*TAIR) AT1G73460.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr1:27620122-27624899 FORWARD LENGTH=1169;; (*ITAG) Solyc03g098150.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53924547-53934622 transcript_region:SL2.40ch03:53924547..53934622+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020261g0002.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|1|1|4|0|191; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=3e-25) Prf [Solanum lycopersicum];; (*ITAG) Solyc05g005130.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:118314-124329 transcript_region:SL2.40ch05:118314..124329- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00020261g0021.1 protein AED:0.29 eAED:0.34 QI:51|0.8|0.5|1|0.8|0.66|6|0|280; (*GB) gi|225425613|ref|XP_002266099.1| (e_value=2e-86) PREDICTED: polygalacturonase At1g48100 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=5e-35) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT3G26610.1 (e_value=1e-69) | Symbols: | Pectin lyase-like superfamily protein | chr3:9777025-9780267 FORWARD LENGTH=470;; (*ITAG) Solyc05g005040.2.1 (e_value=3e-106) genomic_reference:SL2.40ch05 gene_region:58049-62049 transcript_region:SL2.40ch05:58049..62049- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q38958_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00020261g0020.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0.5|1|0.66|0.75|4|0|216; (*GB) gi|255573961|ref|XP_002527898.1| (e_value=7e-104) Polygalacturonase precursor, putative [Ricinus communis];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=4e-39) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT3G26610.1 (e_value=7e-90) | Symbols: | Pectin lyase-like superfamily protein | chr3:9777025-9780267 FORWARD LENGTH=470;; (*ITAG) Solyc05g005040.2.1 (e_value=2e-125) genomic_reference:SL2.40ch05 gene_region:58049-62049 transcript_region:SL2.40ch05:58049..62049- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q38958_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00020261g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.66|0|0|3|0|213; (*ITAG) Solyc05g010360.1.1 (e_value=8e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020261g0019.1 protein AED:0.50 eAED:0.58 QI:0|0|0|0.75|0|0|4|0|189; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=3e-24) Prf [Solanum lycopersicum];; (*ITAG) Solyc05g005130.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:118314-124329 transcript_region:SL2.40ch05:118314..124329- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00020261g0017.1 protein AED:0.43 eAED:0.48 QI:0|0|0|1|0|0|2|0|145; (*GB) gi|8547237|gb|AAF76312.1|AF220603_4 (e_value=6e-29) Prf [Solanum lycopersicum];; (*ITAG) Solyc05g005130.1.1 (e_value=5e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:118314-124329 transcript_region:SL2.40ch05:118314..124329- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00060911g0004.1 protein AED:0.04 eAED:0.04 QI:185|1|1|1|0.5|0.4|5|422|248; (*GB) gi|225456660|ref|XP_002267093.1| (e_value=4e-107) PREDICTED: uncharacterized protein LOC100260399 isoform 1 [Vitis vinifera];; (*TAIR) AT5G62720.1 (e_value=2e-87) | Symbols: | Integral membrane HPP family protein | chr5:25191969-25194845 FORWARD LENGTH=243;; (*ITAG) Solyc03g113280.2.1 (e_value=4e-130) genomic_reference:SL2.40ch03 gene_region:57517093-57522208 transcript_region:SL2.40ch03:57517093..57522208- functional_description:"Membrane protein HPP family (AHRD V1 *-*- D9Y9E6_9DELT); contains Interpro domain(s) IPR007065 HPP "; NbS00052064g0008.1 protein AED:0.28 eAED:0.28 QI:142|1|0.77|1|1|1|9|0|263; (*GB) gi|225461580|ref|XP_002282870.1| (e_value=3e-111) PREDICTED: RNA exonuclease 4-like [Vitis vinifera];; (*SWP) sp|Q9GZR2|REXO4_HUMAN (e_value=4e-56) RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2;; (*TAIR) AT3G15080.1 (e_value=6e-110) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr3:5074319-5076327 FORWARD LENGTH=275;; (*ITAG) Solyc12g014060.1.1 (e_value=1e-155) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4870109-4874487 transcript_region:SL2.40ch12:4870109..4874487- go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- D3PK31_9MAXI); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00025015g0001.1 protein AED:0.02 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|165; (*ITAG) Solyc06g048400.1.1 (e_value=2e-44) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:27493810-27494277 transcript_region:SL2.40ch06:27493810..27494277+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008502 Protein of unknown function DUF784, Arabidopsis thaliana "; NbS00051424g0002.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|99 NbS00051424g0006.1 protein AED:0.28 eAED:0.45 QI:0|0|0|1|0|0|3|0|129; (*ITAG) Solyc06g011460.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00009251g0020.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|1|3|0|659; (*GB) gi|224081377|ref|XP_002306389.1| (e_value=0.0) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=0.0) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=0.0) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc02g005340.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:2271065-2273350 transcript_region:SL2.40ch02:2271065..2273350- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00009251g0022.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.37|0.68|0.86|0.87|16|0|512; (*GB) gi|225423767|ref|XP_002277238.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252512 [Vitis vinifera];; (*SWP) sp|P28737|MSP1_YEAST (e_value=3e-36) Protein MSP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSP1 PE=1 SV=2;; (*TAIR) AT3G19740.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993;; (*ITAG) Solyc02g014350.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00009251g0019.1 protein AED:0.36 eAED:0.41 QI:57|1|0.6|1|1|1|5|0|172; (*GB) gi|297605428|ref|NP_001057200.2| (e_value=2e-87) Os06g0225900 [Oryza sativa Japonica Group];; (*SWP) sp|Q7ZZ25|ATD1A_DANRE (e_value=1e-27) ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2;; (*TAIR) AT1G50140.2 (e_value=8e-85) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:18569921-18578663 REVERSE LENGTH=981;; (*ITAG) Solyc02g014350.2.1 (e_value=1e-93) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00009251g0021.1 protein AED:0.01 eAED:0.01 QI:37|1|1|1|1|1|2|2401|687; (*GB) gi|225432688|ref|XP_002282622.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g14850-like [Vitis vinifera];; (*SWP) sp|Q0WSH6|PP312_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1;; (*TAIR) AT4G14850.1 (e_value=0.0) | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:8513947-8516275 FORWARD LENGTH=684;; (*ITAG) Solyc02g014360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:7029740-7032714 transcript_region:SL2.40ch02:7029740..7032714- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L3A6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00009251g0004.1 protein AED:0.36 eAED:0.36 QI:0|0|0|0.66|1|1|3|0|229; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-68) hypothetical protein [Nicotiana tabacum]; NbS00035923g0007.1 protein AED:0.13 eAED:0.13 QI:259|0.8|0.5|1|0.6|0.83|6|0|1023; (*GB) gi|18146966|dbj|BAB82502.1| (e_value=0.0) cig3 [Nicotiana tabacum];; (*SWP) sp|Q5RJH6|SMG7_MOUSE (e_value=2e-26) Protein SMG7 OS=Mus musculus GN=Smg7 PE=1 SV=1;; (*TAIR) AT5G19400.2 (e_value=0.0) | Symbols: SMG7 | Telomerase activating protein Est1 | chr5:6540603-6544262 FORWARD LENGTH=1059;; (*ITAG) Solyc10g080740.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61271723-61276562 transcript_region:SL2.40ch10:61271723..61276562+ functional_description:"Smg-7 homolog nonsense mediated mRNA decay factor (C. elegans) (Fragment) (AHRD V1 *--- B1ALB4_HUMAN); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00035923g0002.1 protein AED:0.08 eAED:0.69 QI:0|-1|0|1|-1|1|1|0|306; (*GB) gi|147840365|emb|CAN61916.1| (e_value=1e-60) hypothetical protein VITISV_015722 [Vitis vinifera];; (*TAIR) AT3G48800.1 (e_value=3e-28) | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:18095825-18096661 REVERSE LENGTH=278;; (*ITAG) Solyc05g023820.2.1 (e_value=7e-60) genomic_reference:SL2.40ch05 gene_region:29363682-29365771 transcript_region:SL2.40ch05:29363682..29365771+ functional_description:"SAM domain family protein (AHRD V1 **-- B6TSE6_MAIZE); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; NbS00008495g0003.1 protein AED:0.22 eAED:0.22 QI:0|1|0.5|1|0|0.5|2|363|146; (*ITAG) Solyc08g067250.2.1 (e_value=1e-36) genomic_reference:SL2.40ch08 gene_region:53497454-53507180 transcript_region:SL2.40ch08:53497454..53507180+ functional_description:"DNA cross-link repair 1A protein (AHRD V1 *-*- B0XKM0_CULQU); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00008495g0005.1 protein AED:0.08 eAED:0.08 QI:0|1|0.5|1|0|0|2|1942|676; (*GB) gi|225458036|ref|XP_002280360.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Vitis vinifera];; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1;; (*TAIR) AT1G25360.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790;; (*ITAG) Solyc04g082870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008495g0019.1 protein AED:0.14 eAED:0.14 QI:147|0.5|0.33|1|0.5|0.33|3|0|276; (*GB) gi|156712750|dbj|BAF76429.1| (e_value=1e-160) basic region leucine zipper protein [Nicotiana tabacum];; (*SWP) sp|Q9C7S0|BZI60_ARATH (e_value=5e-17) bZIP transcription factor 60 OS=Arabidopsis thaliana GN=BZIP60 PE=2 SV=1;; (*TAIR) AT1G42990.1 (e_value=4e-18) | Symbols: ATBZIP60, BZIP60 | basic region/leucine zipper motif 60 | chr1:16136062-16137459 REVERSE LENGTH=295;; (*ITAG) Solyc04g082890.2.1 (e_value=4e-108) genomic_reference:SL2.40ch04 gene_region:63984560-63987078 transcript_region:SL2.40ch04:63984560..63987078- go_terms:GO:0003700 functional_description:"BZIP transcription factor protein (AHRD V1 **** B2CM16_SOLCH); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0003700 NbS00008495g0014.1 protein AED:0.22 eAED:0.22 QI:388|0.94|0.9|1|0.94|0.9|20|0|626; (*GB) gi|129881|sp|P21342.1|PFPA_SOLTU (e_value=0.0) RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase;; (*SWP) sp|P21342|PFPA_SOLTU (e_value=0.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT1G76550.1 (e_value=0.0) | Symbols: | Phosphofructokinase family protein | chr1:28722900-28726929 REVERSE LENGTH=617;; (*ITAG) Solyc04g082880.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63978067-63983995 transcript_region:SL2.40ch04:63978067..63983995- go_terms:GO:0005515 functional_description:"Diphosphate--fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- C8PT93_9SPIO); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005515 NbS00008495g0006.1 protein AED:0.46 eAED:0.46 QI:63|0|0.5|1|0|0.5|2|0|116; (*GB) gi|224066034|ref|XP_002302000.1| (e_value=8e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=6e-29) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1;; (*TAIR) AT1G25360.1 (e_value=4e-30) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790;; (*ITAG) Solyc04g082870.1.1 (e_value=8e-61) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006148g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.66|0.25|1|1|0.75|4|0|230; (*GB) gi|224110944|ref|XP_002315691.1| (e_value=3e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60460.1 (e_value=3e-48) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 23 Blast hits to 23 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22275600-22278886 FORWARD LENGTH=493;; (*ITAG) Solyc06g065620.1.1 (e_value=8e-122) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37382750-37391688 transcript_region:SL2.40ch06:37382750..37391688+ functional_description:"F8A5.1 protein (AHRD V1 ***- O22692_ARATH)"; NbS00006148g0009.1 protein AED:0.20 eAED:0.20 QI:293|1|0.75|1|1|1|4|0|375; (*GB) gi|225430169|ref|XP_002284801.1| (e_value=0.0) PREDICTED: probable protein phosphatase 2C 22 [Vitis vinifera];; (*SWP) sp|Q9SLA1|P2C22_ARATH (e_value=0.0) Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1;; (*TAIR) AT2G25620.1 (e_value=0.0) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc06g065610.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:37376494-37381443 transcript_region:SL2.40ch06:37376494..37381443+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00006148g0010.1 protein AED:0.24 eAED:0.24 QI:0|1|0|1|0|0|2|0|79; (*ITAG) Solyc06g065620.1.1 (e_value=8e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:37382750-37391688 transcript_region:SL2.40ch06:37382750..37391688+ functional_description:"F8A5.1 protein (AHRD V1 ***- O22692_ARATH)"; NbS00022599g0001.1 protein AED:0.06 eAED:0.06 QI:215|0.33|0.5|0.75|1|1|4|201|264; (*GB) gi|445113|prf||1908418A (e_value=2e-124) acid phosphatase 1;; (*SWP) sp|P27061|PPA1_SOLLC (e_value=1e-125) Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=4e-98) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc06g034110.2.1 (e_value=1e-127) genomic_reference:SL2.40ch06 gene_region:20378718-20384076 transcript_region:SL2.40ch06:20378718..20384076+ go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- Q53WT2_SOLLC); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00022599g0017.1 protein AED:0.16 eAED:0.22 QI:0|0.4|0|1|0.6|0.5|6|0|242; (*GB) gi|147815382|emb|CAN76720.1| (e_value=5e-26) hypothetical protein VITISV_005733 [Vitis vinifera];; (*TAIR) AT5G61620.1 (e_value=4e-22) | Symbols: | myb-like transcription factor family protein | chr5:24772383-24773507 FORWARD LENGTH=317;; (*ITAG) Solyc06g034030.2.1 (e_value=2e-46) genomic_reference:SL2.40ch06 gene_region:20220561-20223287 transcript_region:SL2.40ch06:20220561..20223287+ go_terms:GO:0003677,GO:0008270 functional_description:"Myb family transcription factor (AHRD V1 *-*- Q2A9N2_BRAOL); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677,GO:0008270 NbS00022599g0014.1 protein AED:0.24 eAED:0.24 QI:206|0.85|0.87|1|0.71|0.5|8|490|281; (*GB) gi|359490078|ref|XP_002264821.2| (e_value=2e-134) PREDICTED: ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog [Vitis vinifera];; (*TAIR) AT5G51220.1 (e_value=1e-130) | Symbols: | ubiquinol-cytochrome C chaperone family protein | chr5:20821405-20823125 REVERSE LENGTH=281;; (*ITAG) Solyc06g034100.2.1 (e_value=3e-167) genomic_reference:SL2.40ch06 gene_region:20347654-20362103 transcript_region:SL2.40ch06:20347654..20362103+ functional_description:"Ubiquinol-cytochrome C chaperone family protein (AHRD V1 ***- D7MQY5_ARALY); contains Interpro domain(s) IPR007129 Ubiquinol-cytochrome C chaperone "; NbS00022599g0016.1 protein AED:0.31 eAED:0.31 QI:207|1|1|1|0.71|0.75|8|355|203; (*GB) gi|7643790|gb|AAF65510.1| (e_value=2e-142) small GTP-binding protein [Capsicum annuum];; (*SWP) sp|P28188|RAD2A_ARATH (e_value=1e-138) Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3;; (*TAIR) AT1G02130.1 (e_value=1e-139) | Symbols: ATRAB1B, ARA5, ARA-5, ATRABD2A, RABD2A, RA-5 | RAS 5 | chr1:400350-401788 REVERSE LENGTH=203;; (*ITAG) Solyc05g052070.2.1 (e_value=1e-144) genomic_reference:SL2.40ch05 gene_region:61556718-61560014 transcript_region:SL2.40ch05:61556718..61560014- go_terms:GO:0007264,GO:0015031,GO:0005525,GO:0005622 functional_description:"Ras-related protein Rab-1A (AHRD V1 ***- B9EN43_SALSA); contains Interpro domain(s) IPR002078 RNA polymerase sigma factor 54, interaction "; GO:0007264,GO:0015031,GO:0005525,GO:0005622 NbS00022599g0003.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|146; (*GB) gi|683553|emb|CAA88360.1| (e_value=1e-54) oleosin-like protein [Citrus sinensis];; (*SWP) sp|Q43804|OLEO1_PRUDU (e_value=3e-47) Oleosin 1 OS=Prunus dulcis GN=OLE1 PE=2 SV=1;; (*TAIR) AT4G25140.1 (e_value=1e-42) | Symbols: OLEO1, OLE1 | oleosin 1 | chr4:12900498-12901259 FORWARD LENGTH=173;; (*ITAG) Solyc06g034040.1.1 (e_value=6e-73) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:20256027-20256470 transcript_region:SL2.40ch06:20256027..20256470- go_terms:GO:0016021 functional_description:"Oleosin (AHRD V1 ***- A5JVA7_FICAW); contains Interpro domain(s) IPR000136 Oleosin "; GO:0016021 NbS00001216g0012.1 protein AED:0.24 eAED:0.24 QI:79|0|1|1|0|0.5|2|336|63; (*ITAG) Solyc04g078070.2.1 (e_value=3e-19) genomic_reference:SL2.40ch04 gene_region:60508246-60511703 transcript_region:SL2.40ch04:60508246..60511703- functional_description:"Expressed protein having alternate splicing products (AHRD V1 *--- Q75KB8_ORYSJ); contains Interpro domain(s) IPR015023 Protein of unknown function DUF1909 "; NbS00001216g0004.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|314; (*GB) gi|113205244|gb|AAT39318.2| (e_value=7e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001216g0008.1 protein AED:0.33 eAED:0.33 QI:361|0.75|0.77|0.88|1|1|9|0|291; (*GB) gi|44804336|emb|CAD26882.1| (e_value=0.0) protein kinase CK2 alpha subunit [Nicotiana tabacum];; (*SWP) sp|Q08467|CSK21_ARATH (e_value=0.0) Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=3;; (*TAIR) AT5G67380.1 (e_value=0.0) | Symbols: CKA1, ATCKA1 | casein kinase alpha 1 | chr5:26881156-26883383 REVERSE LENGTH=409;; (*ITAG) Solyc02g092640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:48238108-48244942 transcript_region:SL2.40ch02:48238108..48244942+ go_terms:GO:0006468 functional_description:"Casein kinase (AHRD V1 ***- C5JNY0_AJEDS); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00001216g0005.1 protein AED:0.68 eAED:0.68 QI:0|0|0|0.5|1|1|2|0|70 NbS00018710g0007.1 protein AED:0.31 eAED:0.31 QI:530|0.81|0.75|0.91|0.45|0.58|12|0|670; (*GB) gi|304304318|gb|ADM21465.1| (e_value=0.0) alpha-dioxygenase 2 [Nicotiana attenuata];; (*TAIR) AT1G73680.1 (e_value=0.0) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631;; (*ITAG) Solyc03g119060.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00048196g0004.1 protein AED:0.09 eAED:0.10 QI:0|0.83|0.71|1|0.83|0.71|7|318|653; (*GB) gi|359482068|ref|XP_002272910.2| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=1e-169) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT5G02010.1 (e_value=0.0) | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide exchange factor 7 | chr5:383493-385698 FORWARD LENGTH=546;; (*ITAG) Solyc10g086660.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64763651-64766723 transcript_region:SL2.40ch10:64763651..64766723- go_terms:GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 ***- ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00023406g0004.1 protein AED:0.38 eAED:0.38 QI:0|0.83|0.71|0.85|0.83|0.85|7|374|167; (*GB) gi|302143840|emb|CBI22701.3| (e_value=3e-113) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LEZ8|AP1S1_ARATH (e_value=8e-110) AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana GN=AAP19-1 PE=2 SV=1;; (*TAIR) AT2G17380.1 (e_value=6e-111) | Symbols: AP19 | associated protein 19 | chr2:7553122-7554887 FORWARD LENGTH=161;; (*ITAG) Solyc11g005220.1.1 (e_value=5e-116) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:188098-192547 transcript_region:SL2.40ch11:188098..192547+ go_terms:GO:0030131,GO:0030117,GO:0015031,GO:0006810 functional_description:"AP-1 complex subunit sigma-2 (AHRD V1 ***- B6T1U4_MAIZE); contains Interpro domain(s) IPR015604 Clathrin adaptor AP1, sigma subunit "; GO:0030131,GO:0030117,GO:0015031,GO:0006810 NbS00019720g0013.1 protein AED:0.06 eAED:0.07 QI:460|0.66|0.25|1|0.33|1|4|0|376; (*GB) gi|350606310|ref|NP_001234250.1| (e_value=2e-137) homeobox [Solanum lycopersicum];; (*SWP) sp|Q6ZA74|HOX5_ORYSJ (e_value=2e-38) Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1;; (*TAIR) AT3G01470.1 (e_value=2e-38) | Symbols: ATHB-1, ATHB1, HD-ZIP-1, HAT5, HB-1 | homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272;; (*ITAG) Solyc03g113270.2.1 (e_value=3e-140) genomic_reference:SL2.40ch03 gene_region:57510884-57513100 transcript_region:SL2.40ch03:57510884..57513100+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0005634,GO:0006355,GO:0045449 NbS00019720g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|225456666|ref|XP_002271953.1| (e_value=5e-48) PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera];; (*TAIR) AT1G74730.1 (e_value=2e-38) | Symbols: | Protein of unknown function (DUF1118) | chr1:28078995-28079831 FORWARD LENGTH=198;; (*ITAG) Solyc03g113240.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:57496233-57497718 transcript_region:SL2.40ch03:57496233..57497718+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009500 Protein of unknown function DUF1118 "; NbS00019720g0012.1 protein AED:0.07 eAED:0.11 QI:255|0.5|0.6|1|0.75|0.8|5|110|626; (*GB) gi|297734029|emb|CBI15276.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H157|PTR19_ARATH (e_value=0.0) Nitrate transporter 1.2 OS=Arabidopsis thaliana GN=NRT1.2 PE=1 SV=1;; (*TAIR) AT1G69850.1 (e_value=0.0) | Symbols: ATNRT1:2, NTL1, NRT1:2 | nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585;; (*ITAG) Solyc03g113250.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57498270-57503570 transcript_region:SL2.40ch03:57498270..57503570- go_terms:GO:0080054,GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **-* Q8LG02_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00019720g0014.1 protein AED:0.18 eAED:0.30 QI:0|0|0|1|0.28|0.5|8|0|325; (*GB) gi|359491344|ref|XP_002267182.2| (e_value=2e-60) PREDICTED: polygalacturonase-like [Vitis vinifera];; (*SWP) sp|Q9LW07|PGLR3_ARATH (e_value=1e-50) Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1;; (*TAIR) AT5G39910.1 (e_value=3e-55) | Symbols: | Pectin lyase-like superfamily protein | chr5:15979412-15981671 REVERSE LENGTH=373;; (*ITAG) Solyc03g113230.1.1 (e_value=1e-126) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57493306-57495929 transcript_region:SL2.40ch03:57493306..57495929- go_terms:GO:0004650 functional_description:"Polygalacturonase-like protein (AHRD V1 **-* Q9FLE3_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00041004g0003.1 protein AED:0.21 eAED:0.21 QI:0|0.6|0.33|1|0.6|0.66|6|14|222; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=5e-118) EBP1 [Solanum tuberosum];; (*SWP) sp|P50580|PA2G4_MOUSE (e_value=2e-51) Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3;; (*TAIR) AT3G51800.1 (e_value=3e-99) | Symbols: ATG2, EBP1, ATEBP1 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=392;; (*ITAG) Solyc06g007200.2.1 (e_value=4e-126) genomic_reference:SL2.40ch06 gene_region:1270929-1276535 transcript_region:SL2.40ch06:1270929..1276535+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00020192g0001.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|176; (*GB) gi|147804845|emb|CAN66877.1| (e_value=1e-55) hypothetical protein VITISV_009278 [Vitis vinifera];; (*SWP) sp|P0CC49|NU2C2_COFAR (e_value=6e-52) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=3e-48) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc11g021110.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13367903-13368452 transcript_region:SL2.40ch11:13367903..13368452- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WEQ5_9ROSI); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbC23882545g0001.1 protein AED:0.07 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|86; (*GB) gi|74040324|gb|AAZ95005.1| (e_value=2e-34) late blight resistance protein Rpi-blb2 [Solanum bulbocastanum];; (*SWP) sp|Q6L3N7|R1C3_SOLDE (e_value=4e-19) Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1;; (*ITAG) Solyc06g008790.2.1 (e_value=5e-37) genomic_reference:SL2.40ch06 gene_region:2722296-2726237 transcript_region:SL2.40ch06:2722296..2726237+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00009067g0007.1 protein AED:0.16 eAED:0.16 QI:513|0.8|0.72|1|0.4|0.36|11|293|641; (*GB) gi|359485518|ref|XP_002271198.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251719 [Vitis vinifera];; (*TAIR) AT2G32970.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. | chr2:13991744-13995065 REVERSE LENGTH=690;; (*ITAG) Solyc07g049350.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56952763-56957872 transcript_region:SL2.40ch07:56952763..56957872+ functional_description:"(Rice Genome Annotation Project) expressed protein (AHRD V1 ***- B7FAJ2_ORYSJ)"; NbS00009067g0002.1 protein AED:0.36 eAED:0.42 QI:0|0.5|0|0.66|1|1|3|0|96; (*GB) gi|213868279|gb|ACJ54186.1| (e_value=4e-66) SUMO [Nicotiana benthamiana];; (*SWP) sp|Q9FLP6|SUMO2_ARATH (e_value=1e-57) Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana GN=SUMO2 PE=1 SV=1;; (*TAIR) AT5G55160.1 (e_value=8e-59) | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiquitin-like modifier 2 | chr5:22383747-22384772 REVERSE LENGTH=103;; (*ITAG) Solyc12g006010.1.1 (e_value=2e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:619162-621481 transcript_region:SL2.40ch12:619162..621481+ go_terms:GO:0005737 functional_description:"Small ubiquitin-related modifier (AHRD V1 ***- A6BMG7_COPCI); contains Interpro domain(s) IPR000626 Ubiquitin "; GO:0005737 NbS00023255g0005.1 protein AED:0.03 eAED:0.03 QI:72|0.75|0.4|1|0.5|0.4|5|0|238; (*GB) gi|186970563|gb|ACC99356.1| (e_value=2e-78) lyrate [Solanum lycopersicum];; (*SWP) sp|Q6S591|JAG_ARATH (e_value=2e-38) Zinc finger protein JAGGED OS=Arabidopsis thaliana GN=JAG PE=2 SV=1;; (*TAIR) AT1G68480.1 (e_value=1e-39) | Symbols: JAG | C2H2 and C2HC zinc fingers superfamily protein | chr1:25684543-25685932 REVERSE LENGTH=253;; (*ITAG) Solyc05g009380.2.1 (e_value=4e-80) genomic_reference:SL2.40ch05 gene_region:3536207-3540567 transcript_region:SL2.40ch05:3536207..3540567- go_terms:GO:0005622 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *--- D8SQF8_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00023255g0009.1 protein AED:0.13 eAED:0.13 QI:128|1|1|1|0.71|0.75|8|934|180; (*GB) gi|225423993|ref|XP_002282702.1| (e_value=7e-25) PREDICTED: monoglyceride lipase [Vitis vinifera];; (*TAIR) AT1G77420.1 (e_value=1e-21) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:29093641-29095442 FORWARD LENGTH=382;; (*ITAG) Solyc05g009390.2.1 (e_value=1e-51) genomic_reference:SL2.40ch05 gene_region:3544526-3548741 transcript_region:SL2.40ch05:3544526..3548741- go_terms:GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9LF16_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00059106g0003.1 protein AED:0.24 eAED:0.25 QI:92|1|0.5|1|0|0.5|2|0|105; (*GB) gi|15236039|ref|NP_193463.1| (e_value=6e-17) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G17310.1 (e_value=1e-19) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9686466-9686848 REVERSE LENGTH=99;; (*ITAG) Solyc08g078560.2.1 (e_value=5e-17) genomic_reference:SL2.40ch08 gene_region:59515096-59516344 transcript_region:SL2.40ch08:59515096..59516344+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021335g0001.1 protein AED:0.03 eAED:0.03 QI:0|1|0.8|1|0.75|0.6|5|325|398; (*GB) gi|67906424|gb|AAY82589.1| (e_value=0.0) bZIP [Nicotiana tabacum];; (*SWP) sp|Q9M7Q4|AI5L5_ARATH (e_value=1e-76) ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1;; (*TAIR) AT1G45249.1 (e_value=1e-77) | Symbols: ABF2, AREB1, ATAREB1 | abscisic acid responsive elements-binding factor 2 | chr1:17165420-17167415 REVERSE LENGTH=416;; (*ITAG) Solyc10g050210.1.1 (e_value=3e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:43594760-43596753 transcript_region:SL2.40ch10:43594760..43596753- go_terms:GO:0005515,GO:0016563,GO:0003677 functional_description:"BZIP transcription factor (AHRD V1 **-* Q0PN11_9FABA); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0005515,GO:0016563,GO:0003677 NbS00021335g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.5|1|1|2|0|88; (*GB) gi|2511737|gb|AAB80931.1| (e_value=5e-48) caffeoyl-CoA 3-O-methyltransferase 5 [Nicotiana tabacum];; (*SWP) sp|O04899|CAMT5_TOBAC (e_value=4e-49) Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1;; (*TAIR) AT4G34050.1 (e_value=1e-48) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc02g093270.2.1 (e_value=3e-48) genomic_reference:SL2.40ch02 gene_region:48756122-48757525 transcript_region:SL2.40ch02:48756122..48757525- go_terms:GO:0042409 functional_description:"Caffeoyl-CoA O-methyltransferase (AHRD V1 **** A8IFQ7_SOLLC); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0042409 NbS00021335g0002.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|225460490|ref|XP_002270278.1| (e_value=3e-98) PREDICTED: uncharacterized protein LOC100247803 [Vitis vinifera];; (*TAIR) AT5G46090.1 (e_value=9e-34) | Symbols: | Protein of unknown function (DUF679) | chr5:18693485-18694129 FORWARD LENGTH=214;; (*ITAG) Solyc10g050200.1.1 (e_value=1e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:43593514-43594149 transcript_region:SL2.40ch10:43593514..43594149+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00028068g0003.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.75|1|1|4|0|416; (*GB) gi|147856457|emb|CAN80769.1| (e_value=2e-117) hypothetical protein VITISV_013866 [Vitis vinifera];; (*SWP) sp|Q9M9R6|PPR43_ARATH (e_value=2e-97) Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2;; (*TAIR) AT1G14470.1 (e_value=1e-98) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4954080-4955702 FORWARD LENGTH=540;; (*ITAG) Solyc01g102790.2.1 (e_value=8e-170) genomic_reference:SL2.40ch01 gene_region:83258225-83260605 transcript_region:SL2.40ch01:83258225..83260605- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010127g0003.1 protein AED:0.10 eAED:0.10 QI:197|1|0.66|1|1|1|3|548|93; (*GB) gi|343887279|dbj|BAK61825.1| (e_value=1e-35) hypothetical protein [Citrus unshiu];; (*SWP) sp|Q9SMZ9|Y4331_ARATH (e_value=1e-35) Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=2 SV=1;; (*TAIR) AT4G33100.1 (e_value=1e-36) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:15971701-15972342 FORWARD LENGTH=92;; (*ITAG) Solyc08g062620.2.1 (e_value=6e-55) genomic_reference:SL2.40ch08 gene_region:48785109-48786000 transcript_region:SL2.40ch08:48785109..48786000- go_terms:GO:0005515,GO:0043027 functional_description:"TP53-regulated inhibitor of apoptosis 1 (AHRD V1 ---* C1BK64_OSMMO); contains Interpro domain(s) IPR007918 Mitochondrial distribution and morphology family 35/apoptosis "; GO:0005515,GO:0043027 NbS00040897g0001.1 protein AED:0.54 eAED:0.54 QI:0|0|0|0.33|1|1|3|0|139; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=1e-18) hypothetical protein [Nicotiana tabacum]; NbS00025248g0007.1 protein AED:0.11 eAED:0.11 QI:0|0.75|0.8|1|1|1|5|196|539; (*GB) gi|317016596|gb|ACT90640.2| (e_value=3e-166) inducer of CBF expression [Camellia sinensis];; (*SWP) sp|Q9LSE2|ICE1_ARATH (e_value=7e-109) Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1;; (*TAIR) AT3G26744.4 (e_value=5e-110) | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494;; (*ITAG) Solyc06g068870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39083842-39089281 transcript_region:SL2.40ch06:39083842..39089281- go_terms:GO:0016563,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00025248g0009.1 protein AED:0.13 eAED:0.14 QI:619|0.75|0.77|1|0.5|0.66|9|489|263; (*GB) gi|225456467|ref|XP_002280796.1| (e_value=1e-146) PREDICTED: serine carboxypeptidase-like 45-like [Vitis vinifera];; (*SWP) sp|Q93Y09|SCP45_ARATH (e_value=4e-144) Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1;; (*TAIR) AT1G28110.2 (e_value=3e-145) | Symbols: SCPL45 | serine carboxypeptidase-like 45 | chr1:9804153-9806832 REVERSE LENGTH=461;; (*ITAG) Solyc06g068880.2.1 (e_value=3e-167) genomic_reference:SL2.40ch06 gene_region:39093829-39097028 transcript_region:SL2.40ch06:39093829..39097028- go_terms:GO:0005515,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6U0V5_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0005515,GO:0004185 NbS00010913g0003.1 protein AED:0.13 eAED:0.13 QI:189|1|1|1|1|1|17|389|483; (*GB) gi|356556092|ref|XP_003546361.1| (e_value=0.0) PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max];; (*SWP) sp|Q42384|PRL1_ARATH (e_value=0.0) Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1;; (*TAIR) AT4G15900.1 (e_value=0.0) | Symbols: PRL1 | pleiotropic regulatory locus 1 | chr4:9023775-9027443 FORWARD LENGTH=486;; (*ITAG) Solyc01g094480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:77700642-77708854 transcript_region:SL2.40ch01:77700642..77708854+ go_terms:GO:0003714 functional_description:"Pre-mRNA-splicing factor prp46 (AHRD V1 **-- B6K7I2_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00009499g0012.1 protein AED:0.06 eAED:0.06 QI:163|1|1|1|0.8|0.66|6|393|542; (*GB) gi|224121984|ref|XP_002330702.1| (e_value=9e-143) predicted protein [Populus trichocarpa];; (*TAIR) AT3G59670.1 (e_value=4e-99) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:22040485-22042380 FORWARD LENGTH=517;; (*ITAG) Solyc03g062900.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:29800086-29805392 transcript_region:SL2.40ch03:29800086..29805392+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009499g0013.1 protein AED:0.14 eAED:0.14 QI:185|1|0.92|1|0.75|0.61|13|0|582; (*GB) gi|359478143|ref|XP_002269633.2| (e_value=0.0) PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera];; (*SWP) sp|A9X4U2|HSDD3_ARATH (e_value=1e-159) 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3 OS=Arabidopsis thaliana GN=3BETAHSD/D3 PE=2 SV=2;; (*TAIR) AT2G43420.1 (e_value=8e-161) | Symbols: | 3-beta hydroxysteroid dehydrogenase/isomerase family protein | chr2:18031493-18034936 REVERSE LENGTH=561;; (*ITAG) Solyc12g021130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14337142-14346988 transcript_region:SL2.40ch12:14337142..14346988+ go_terms:GO:0008152,GO:0006694,GO:0005783 functional_description:"3-beta-hydroxysteroid dehydrogenase-like (AHRD V1 ***- Q69IL0_ORYSJ); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0008152,GO:0006694,GO:0005783 NbS00012936g0020.1 protein AED:0.23 eAED:0.29 QI:401|0.6|0.66|1|0.4|0.33|6|0|189; (*GB) gi|350540086|ref|NP_001234382.1| (e_value=8e-21) nuclear GTPase-like [Solanum lycopersicum];; (*SWP) sp|Q54KS4|GNL3_DICDI (e_value=2e-14) Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1;; (*TAIR) AT3G07050.1 (e_value=2e-20) | Symbols: | GTP-binding family protein | chr3:2229602-2232279 REVERSE LENGTH=582;; (*ITAG) Solyc06g083520.2.1 (e_value=2e-27) genomic_reference:SL2.40ch06 gene_region:45204133-45208934 transcript_region:SL2.40ch06:45204133..45208934+ go_terms:GO:0003723 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B0WF29_CULQU); contains Interpro domain(s) IPR014813 GNL3L/Grn1 putative GTPase "; GO:0003723 NbS00012936g0019.1 protein AED:0.10 eAED:0.13 QI:0|0|0|1|1|1|2|0|836; (*GB) gi|225456043|ref|XP_002277498.1| (e_value=0.0) PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera];; (*SWP) sp|Q7XA42|RGA1_SOLBU (e_value=8e-115) Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2;; (*TAIR) AT3G14470.1 (e_value=9e-80) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054;; (*ITAG) Solyc04g039990.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30737307-30739154 transcript_region:SL2.40ch04:30737307..30739154- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs, resistance protein fragment"; GO:0006952,GO:0006915 NbS00012936g0017.1 protein AED:0.18 eAED:0.18 QI:223|0.75|0.6|1|0.5|0.6|5|0|439; (*GB) gi|356566421|ref|XP_003551430.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At3g07070-like [Glycine max];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=5e-174) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT3G07070.1 (e_value=4e-175) | Symbols: | Protein kinase superfamily protein | chr3:2238455-2240074 FORWARD LENGTH=414;; (*ITAG) Solyc06g083500.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:45194883-45198656 transcript_region:SL2.40ch06:45194883..45198656- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00012936g0022.1 protein AED:0.35 eAED:0.38 QI:132|0.72|0.5|1|0.54|0.41|12|0|496; (*GB) gi|297744331|emb|CBI37301.3| (e_value=2e-128) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G48830.1 (e_value=2e-103) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19800269-19802625 REVERSE LENGTH=511;; (*ITAG) Solyc09g061420.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54682596-54695544 transcript_region:SL2.40ch09:54682596..54695544- functional_description:"Os02g0515000 protein (Fragment) (AHRD V1 *-*- Q0E0X2_ORYSJ)"; NbS00015336g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|1072|462; (*GB) gi|225469211|ref|XP_002263607.1| (e_value=0.0) PREDICTED: U-box domain-containing protein 9 [Vitis vinifera];; (*SWP) sp|Q9SRT0|PUB9_ARATH (e_value=2e-146) U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1;; (*TAIR) AT3G07360.1 (e_value=1e-147) | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354884-2356613 FORWARD LENGTH=460;; (*ITAG) Solyc09g056450.2.1 (e_value=6e-174) genomic_reference:SL2.40ch09 gene_region:44819879-44822010 transcript_region:SL2.40ch09:44819879..44822010- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- D7KBV1_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00006694g0008.1 protein AED:0.02 eAED:0.02 QI:236|0.5|0.33|1|0.5|0.33|3|0|343; (*GB) gi|255573599|ref|XP_002527722.1| (e_value=7e-147) zinc/iron transporter, putative [Ricinus communis];; (*SWP) sp|Q6L8G0|ZIP5_ORYSJ (e_value=1e-119) Zinc transporter 5 OS=Oryza sativa subsp. japonica GN=ZIP5 PE=2 SV=1;; (*TAIR) AT1G05300.1 (e_value=2e-119) | Symbols: ZIP5 | zinc transporter 5 precursor | chr1:1545258-1547709 REVERSE LENGTH=360;; (*ITAG) Solyc02g032100.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:18213494-18215411 transcript_region:SL2.40ch02:18213494..18215411+ go_terms:GO:0000006,GO:0000007 functional_description:"Low affinity zinc transporter (AHRD V1 **** A3LU47_PICST); contains Interpro domain(s) IPR004698 Zinc/iron permease, fungal and plant "; GO:0000006,GO:0000007 NbS00006694g0115.1 protein AED:0.06 eAED:0.06 QI:0|0.75|0.6|1|0.75|1|5|0|234 NbS00006694g0110.1 protein AED:0.05 eAED:0.10 QI:0|0|0|0.5|1|1|2|0|332 NbS00006694g0116.1 protein AED:0.12 eAED:0.12 QI:358|1|0.83|1|0.8|0.66|6|0|252 NbS00006694g0117.1 protein AED:0.30 eAED:0.30 QI:0|0.8|0.66|1|0.2|0.5|6|34|252 NbS00006694g0114.1 protein AED:0.17 eAED:0.17 QI:129|1|0.5|1|1|1|2|0|290 NbS00008392g0007.1 protein AED:0.03 eAED:0.03 QI:55|1|1|1|1|1|2|175|563; (*GB) gi|255564232|ref|XP_002523113.1| (e_value=0.0) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|O81301|PME40_ARATH (e_value=0.0) Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1;; (*TAIR) AT4G02320.1 (e_value=0.0) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=518;; (*ITAG) Solyc09g075350.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62565231-62569848 transcript_region:SL2.40ch09:62565231..62569848+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00012020g0003.1 protein AED:0.04 eAED:0.04 QI:0|1|0.75|1|0.66|0.5|4|130|507; (*GB) gi|118484713|gb|ABK94226.1| (e_value=0.0) unknown [Populus trichocarpa];; (*SWP) sp|Q54Z26|GLYC1_DICDI (e_value=0.0) Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1;; (*TAIR) AT4G13930.1 (e_value=0.0) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471;; (*ITAG) Solyc12g098490.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64323994-64326887 transcript_region:SL2.40ch12:64323994..64326887- go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** D2D306_GOSHI); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbC24537988g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|89; (*GB) gi|26984133|gb|AAN85207.1| (e_value=2e-55) DNA topoisomerase II [Nicotiana tabacum];; (*SWP) sp|O24308|TOP2_PEA (e_value=4e-45) DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1;; (*TAIR) AT3G23890.1 (e_value=2e-41) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473;; (*ITAG) Solyc01g087500.2.1 (e_value=6e-57) genomic_reference:SL2.40ch01 gene_region:74205900-74212696 transcript_region:SL2.40ch01:74205900..74212696- go_terms:GO:0003918 functional_description:"DNA topoisomerase 2 (AHRD V1 **** Q8GSC4_TOBAC); contains Interpro domain(s) IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal "; GO:0003918 NbS00048095g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|41059853|gb|AAR99391.1| (e_value=1e-82) ACC synthase ACS2 [Nicotiana attenuata];; (*SWP) sp|Q01912|1A1C_VIGRR (e_value=4e-64) 1-aminocyclopropane-1-carboxylate synthase (Fragment) OS=Vigna radiata var. radiata GN=ACS5 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=9e-55) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc12g056180.1.1 (e_value=3e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47503018-47506952 transcript_region:SL2.40ch12:47503018..47506952+ go_terms:GO:0042803 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 ***- Q9SC82_TOBAC); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0042803 NbS00023002g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0.88|1|0.87|0.88|9|390|693; (*GB) gi|225438549|ref|XP_002279804.1| (e_value=0.0) PREDICTED: ABC transporter F family member 5 [Vitis vinifera];; (*SWP) sp|Q9LV93|AB5F_ARATH (e_value=0.0) ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1;; (*TAIR) AT5G64840.1 (e_value=0.0) | Symbols: GCN5, ATGCN5 | general control non-repressible 5 | chr5:25916956-25919693 REVERSE LENGTH=692;; (*ITAG) Solyc04g051800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50247234-50252528 transcript_region:SL2.40ch04:50247234..50252528- go_terms:GO:0042626 functional_description:"ABC transporter ATP-binding protein (AHRD V1 ***- D4ZPJ5_SPIPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00002039g0007.1 protein AED:0.03 eAED:0.04 QI:0|1|0.75|1|1|1|4|0|462; (*GB) gi|255577538|ref|XP_002529647.1| (e_value=2e-162) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17840.1 (e_value=8e-146) | Symbols: ERD7 | Senescence/dehydration-associated protein-related | chr2:7755923-7757798 REVERSE LENGTH=452;; (*ITAG) Solyc02g083690.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41573758-41576394 transcript_region:SL2.40ch02:41573758..41576394- functional_description:"Senescence-associated protein 12 (AHRD V1 *-*- O81657_HEMSP); contains Interpro domain(s) IPR009686 Senescence-associated "; NbS00002039g0009.1 protein AED:0.10 eAED:0.14 QI:218|0.61|0.78|1|0.69|0.71|14|237|606; (*GB) gi|3202042|gb|AAC19402.1| (e_value=2e-134) 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum];; (*SWP) sp|P55034|PSMD4_ARATH (e_value=3e-115) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1;; (*TAIR) AT4G38630.1 (e_value=2e-116) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386;; (*ITAG) Solyc02g083710.2.1 (e_value=2e-147) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00002039g0011.1 protein AED:0.16 eAED:0.16 QI:187|0.92|0.92|1|0.88|0.89|28|236|941; (*GB) gi|225431096|ref|XP_002265360.1| (e_value=0.0) PREDICTED: lysosomal alpha-mannosidase [Vitis vinifera];; (*SWP) sp|Q8VHC8|MA2B1_CAVPO (e_value=0.0) Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1;; (*TAIR) AT5G66150.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family 38 protein | chr5:26439013-26444434 REVERSE LENGTH=1047;; (*ITAG) Solyc02g083700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:41576605-41584963 transcript_region:SL2.40ch02:41576605..41584963- go_terms:GO:0004559 functional_description:"Alpha-mannosidase (AHRD V1 **** Q9FKW9_ARATH); contains Interpro domain(s) IPR011682 Glycosyl hydrolases 38, C-terminal "; GO:0004559 NbS00041127g0005.1 protein AED:0.11 eAED:0.11 QI:0|0.71|0.75|1|0.57|0.62|8|498|315; (*GB) gi|255642439|gb|ACU21483.1| (e_value=5e-71) unknown [Glycine max];; (*SWP) sp|Q54WR5|CCD94_DICDI (e_value=1e-25) Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1;; (*TAIR) AT1G17130.1 (e_value=1e-68) | Symbols: | Family of unknown function (DUF572) | chr1:5854264-5856472 FORWARD LENGTH=331;; (*ITAG) Solyc08g074420.2.1 (e_value=4e-99) genomic_reference:SL2.40ch08 gene_region:55706856-55712251 transcript_region:SL2.40ch08:55706856..55712251+ functional_description:"Coiled-coil domain-containing protein 130 (AHRD V1 *--- CC130_BOVIN); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; NbS00053111g0003.1 protein AED:0.08 eAED:0.10 QI:0|0.75|0.4|1|0.75|0.6|5|282|421; (*GB) gi|359484512|ref|XP_003633115.1| (e_value=0.0) PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Vitis vinifera];; (*SWP) sp|Q9SSK1|SYNC3_ARATH (e_value=0.0) Asparagine--tRNA ligase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1;; (*TAIR) AT1G70980.1 (e_value=0.0) | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr1:26762339-26764394 FORWARD LENGTH=571;; (*ITAG) Solyc10g080710.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61247846-61251817 transcript_region:SL2.40ch10:61247846..61251817- go_terms:GO:0005515,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase 2 (AHRD V1 **** D7L6K3_ARALY); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb "; GO:0005515,GO:0004816 NbS00044462g0006.1 protein AED:0.36 eAED:0.57 QI:79|0.33|0|1|0|0|4|0|58; (*GB) gi|255540209|ref|XP_002511169.1| (e_value=1e-19) Thylakoid lumenal 17.9 kDa protein, chloroplast precursor, putative [Ricinus communis];; (*ITAG) Solyc03g019660.2.1 (e_value=9e-28) genomic_reference:SL2.40ch03 gene_region:6617595-6620127 transcript_region:SL2.40ch03:6617595..6620127- functional_description:"Thylakoid lumenal 17.9 kDa protein, chloroplastic (AHRD V1 ***- TL1Y_ARATH)"; NbS00044462g0005.1 protein AED:0.31 eAED:0.31 QI:210|1|0.87|1|1|1|8|0|287; (*GB) gi|225449863|ref|XP_002265279.1| (e_value=5e-180) PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Vitis vinifera];; (*SWP) sp|Q5PQR5|IMP4_RAT (e_value=1e-98) U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1;; (*TAIR) AT1G63780.1 (e_value=4e-158) | Symbols: IMP4 | Ribosomal RNA processing Brix domain protein | chr1:23665045-23667243 REVERSE LENGTH=294;; (*ITAG) Solyc01g007250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1809283-1813878 transcript_region:SL2.40ch01:1809283..1813878- functional_description:"U3 small nucleolar ribonucleoprotein protein IMP4 (AHRD V1 ***- D0N3A6_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; NbS00007553g0020.1 protein AED:0.18 eAED:0.20 QI:31|0.86|0.87|1|0.76|0.83|31|675|882; (*GB) gi|356536398|ref|XP_003536725.1| (e_value=0.0) PREDICTED: transportin-1-like isoform 1 [Glycine max];; (*SWP) sp|Q92973|TNPO1_HUMAN (e_value=0.0) Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2;; (*TAIR) AT2G16950.2 (e_value=0.0) | Symbols: TRN1, ATTRN1 | transportin 1 | chr2:7353939-7360637 FORWARD LENGTH=891;; (*ITAG) Solyc01g111780.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89713800-89731648 transcript_region:SL2.40ch01:89713800..89731648+ go_terms:GO:0008320 functional_description:"Importin beta-2 subunit (AHRD V1 **-- C5JY88_AJEDS); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00007553g0024.1 protein AED:0.24 eAED:0.24 QI:403|1|0.6|1|0.75|0.6|5|0|429; (*GB) gi|255560515|ref|XP_002521272.1| (e_value=0.0) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5PNS9|P2C64_ARATH (e_value=0.0) Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1;; (*TAIR) AT4G38520.2 (e_value=0.0) | Symbols: | Protein phosphatase 2C family protein | chr4:18015999-18017514 REVERSE LENGTH=400;; (*ITAG) Solyc01g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89677639-89683363 transcript_region:SL2.40ch01:89677639..89683363+ go_terms:GO:0016020,GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7MEZ6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0016020,GO:0008287,GO:0003824 NbS00007553g0014.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|89; (*ITAG) Solyc01g111820.2.1 (e_value=6e-27) genomic_reference:SL2.40ch01 gene_region:89742850-89743437 transcript_region:SL2.40ch01:89742850..89743437+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007553g0003.1 protein AED:0.28 eAED:0.28 QI:132|0.93|0.93|1|0.66|0.62|16|917|258; (*GB) gi|224105123|ref|XP_002313695.1| (e_value=1e-175) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZN1|VATB2_ARATH (e_value=6e-173) V-type proton ATPase subunit B2 OS=Arabidopsis thaliana GN=VHA-B2 PE=2 SV=1;; (*TAIR) AT4G38510.5 (e_value=3e-174) | Symbols: | ATPase, V1 complex, subunit B protein | chr4:18011155-18014897 REVERSE LENGTH=494;; (*ITAG) Solyc01g111760.2.1 (e_value=1e-174) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00007553g0023.1 protein AED:0.47 eAED:0.57 QI:0|0.75|0|1|0.75|0.8|5|0|218; (*GB) gi|255560501|ref|XP_002521265.1| (e_value=3e-87) Phytoene dehydrogenase, putative [Ricinus communis]; NbS00007553g0018.1 protein AED:0.37 eAED:0.90 QI:0|0|0|1|1|0.5|2|0|105 NbS00060500g0004.1 protein AED:0.00 eAED:0.00 QI:37|1|0.66|1|1|1|3|869|373; (*GB) gi|225430107|ref|XP_002281922.1| (e_value=4e-134) PREDICTED: uncharacterized protein LOC100264575 [Vitis vinifera];; (*TAIR) AT4G32620.1 (e_value=1e-73) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr4:15731968-15737222 FORWARD LENGTH=1539;; (*ITAG) Solyc08g067920.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54181062-54189739 transcript_region:SL2.40ch08:54181062..54189739+ go_terms:GO:0003676,GO:0008299 functional_description:"Nucleic acid binding protein (AHRD V1 *--- D7M9R5_ARALY); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003676,GO:0008299 NbS00049327g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.66|1|1|1|3|0|153; (*GB) gi|225460644|ref|XP_002266350.1| (e_value=8e-48) PREDICTED: thioredoxin Y1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6NPF9|TRXY1_ARATH (e_value=3e-44) Thioredoxin Y1, chloroplastic OS=Arabidopsis thaliana GN=At1g76760 PE=2 SV=1;; (*TAIR) AT1G76760.1 (e_value=2e-45) | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811873-28812948 REVERSE LENGTH=172;; (*ITAG) Solyc04g071560.2.1 (e_value=5e-64) genomic_reference:SL2.40ch04 gene_region:56133865-56137308 transcript_region:SL2.40ch04:56133865..56137308+ go_terms:GO:0045454 functional_description:"Thioredoxin y (AHRD V1 ***- B9GTH5_POPTR); contains Interpro domain(s) IPR005746 Thioredoxin "; GO:0045454 NbS00003864g0006.1 protein AED:0.22 eAED:0.22 QI:181|0.84|0.71|1|0.84|0.92|14|160|524; (*GB) gi|255547424|ref|XP_002514769.1| (e_value=0.0) beta-hexosaminidase, putative [Ricinus communis];; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=2e-92) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1;; (*TAIR) AT1G65590.1 (e_value=0.0) | Symbols: HEXO3, ATHEX1 | beta-hexosaminidase 3 | chr1:24385996-24390989 FORWARD LENGTH=535;; (*ITAG) Solyc11g008810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2996357-3002941 transcript_region:SL2.40ch11:2996357..3002941+ go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 "; GO:0016231 NbS00003864g0009.1 protein AED:0.03 eAED:0.03 QI:0|0.5|0|1|0.5|0.33|3|0|642; (*GB) gi|296083403|emb|CBI23358.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SYK4|IP5PD_ARATH (e_value=0.0) Type I inositol 1,4,5-trisphosphate 5-phosphatase 13 OS=Arabidopsis thaliana GN=5PTASE13 PE=1 SV=1;; (*TAIR) AT1G05630.2 (e_value=0.0) | Symbols: AT5PTASE13, 5PTASE13 | Endonuclease/exonuclease/phosphatase family protein | chr1:1682483-1687153 FORWARD LENGTH=1136;; (*ITAG) Solyc11g008800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2978131-2987532 transcript_region:SL2.40ch11:2978131..2987532- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00016929g0014.1 protein AED:0.10 eAED:0.11 QI:0|0.66|0.25|1|1|1|4|0|197; (*GB) gi|32470656|gb|AAP45182.1| (e_value=3e-89) Putative kinesin-like protein, identical [Solanum bulbocastanum];; (*ITAG) Solyc08g075930.2.1 (e_value=2e-72) genomic_reference:SL2.40ch08 gene_region:57173960-57176619 transcript_region:SL2.40ch08:57173960..57176619- functional_description:"Kinesin-like (AHRD V1 *-*- Q6Z9U4_ORYSJ)"; NbS00016929g0015.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|1|2|0|128; (*GB) gi|359485671|ref|XP_002274384.2| (e_value=3e-19) PREDICTED: putative zinc finger protein CONSTANS-LIKE 11-like [Vitis vinifera];; (*ITAG) Solyc05g046040.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:57316966-57319191 transcript_region:SL2.40ch05:57316966..57319191+ go_terms:GO:0005622 functional_description:"CONSTANS-like zinc finger protein (AHRD V1 **-- D0EP07_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; GO:0005622 NbS00016929g0017.1 protein AED:0.52 eAED:0.52 QI:0|0|0|0.66|0|0.33|3|0|94; (*GB) gi|67515354|gb|AAY68206.1| (e_value=7e-33) RNA polymerase IV second largest subunit [Solanum lycopersicum];; (*SWP) sp|Q9LV32|RPD2B_ARATH (e_value=1e-24) DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b PE=2 SV=1;; (*TAIR) AT3G18090.1 (e_value=9e-26) | Symbols: NRPD2B | nuclear RNA polymerase D2B | chr3:6195323-6200204 FORWARD LENGTH=1055;; (*ITAG) Solyc03g110880.2.1 (e_value=1e-35) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00016929g0010.1 protein AED:0.30 eAED:0.32 QI:0|0|0|0.33|1|1|3|0|252; (*ITAG) Solyc04g063430.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54680740-54681255 transcript_region:SL2.40ch04:54680740..54681255- functional_description:"Unknown Protein (AHRD V1)"; NbS00016929g0016.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|92; (*GB) gi|109289916|gb|ABG29322.1| (e_value=3e-45) DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum bulbocastanum];; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=5e-39) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=4e-40) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=2e-46) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00033482g0001.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.5|1|1|4|0|118; (*ITAG) Solyc10g078720.1.1 (e_value=1e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00016642g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.8|0.5|1|1|1|6|0|355; (*GB) gi|350538241|ref|NP_001234589.1| (e_value=0.0) GDP-mannose 3',5'-epimerase [Solanum lycopersicum];; (*SWP) sp|A3C4S4|GME1_ORYSJ (e_value=0.0) GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1;; (*TAIR) AT5G28840.2 (e_value=0.0) | Symbols: GME | GDP-D-mannose 3',5'-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377;; (*ITAG) Solyc09g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64083974-64088590 transcript_region:SL2.40ch09:64083974..64088590- go_terms:GO:0048040 functional_description:"GDP-D-mannose-3## ,5## -epimerase 2"; GO:0048040 NbS00016642g0014.1 protein AED:0.08 eAED:0.08 QI:0|1|0.87|1|0.85|0.75|8|0|463; (*GB) gi|225432860|ref|XP_002283908.1| (e_value=0.0) PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera];; (*TAIR) AT3G22990.1 (e_value=0.0) | Symbols: LFR | ARM repeat superfamily protein | chr3:8164015-8166145 FORWARD LENGTH=460;; (*ITAG) Solyc09g083000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:64092690-64097563 transcript_region:SL2.40ch09:64092690..64097563+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MXC7 (AHRD V1 ***- Q9LS90_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00027946g0010.1 protein AED:0.01 eAED:0.01 QI:95|1|1|1|1|1|3|185|628; (*GB) gi|350538029|ref|NP_001234835.1| (e_value=0.0) polygalacturonase-1 non-catalytic subunit beta precursor [Solanum lycopersicum];; (*SWP) sp|Q40161|GP1_SOLLC (e_value=0.0) Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1;; (*TAIR) AT1G70370.2 (e_value=0.0) | Symbols: PG2 | polygalacturonase 2 | chr1:26513003-26514998 REVERSE LENGTH=626;; (*ITAG) Solyc05g005560.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:402750-405238 transcript_region:SL2.40ch05:402750..405238+ go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- C1PI44_ARATH); contains Interpro domain(s) IPR004873 BURP "; GO:0004650 NbS00027946g0008.1 protein AED:0.15 eAED:0.15 QI:1337|1|1|1|0.66|0.4|10|960|185; (*GB) gi|359490404|ref|XP_002275092.2| (e_value=2e-50) PREDICTED: valyl-tRNA synthetase-like [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=1e-47) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=9e-49) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=2e-61) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00027946g0012.1 protein AED:0.75 eAED:0.91 QI:0|0|0|0.25|1|1|4|0|126; (*GB) gi|297741117|emb|CBI31848.3| (e_value=3e-12) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=5e-11) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=4e-12) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=8e-13) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00028355g0016.1 protein AED:0.09 eAED:0.11 QI:54|0.81|0.83|1|0.81|0.66|12|67|762; (*GB) gi|359479162|ref|XP_002268336.2| (e_value=0.0) PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera];; (*SWP) sp|Q9ZPV5|NOC2L_ARATH (e_value=0.0) Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2;; (*TAIR) AT2G18220.1 (e_value=0.0) | Symbols: | Noc2p family | chr2:7928254-7931851 FORWARD LENGTH=764;; (*ITAG) Solyc02g081680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40122531-40127925 transcript_region:SL2.40ch02:40122531..40127925- go_terms:GO:0042802 functional_description:"Nucleolar complex protein 2 homolog (AHRD V1 ***- C0H9R3_SALSA); contains Interpro domain(s) IPR005343 Uncharacterised protein family UPF0120 "; GO:0042802 NbS00028355g0006.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|717; (*GB) gi|225423589|ref|XP_002275605.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g20090-like [Vitis vinifera];; (*SWP) sp|O49436|PP327_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=2 SV=1;; (*TAIR) AT4G20090.1 (e_value=0.0) | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10868400-10870382 REVERSE LENGTH=660;; (*ITAG) Solyc02g081860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40221696-40223849 transcript_region:SL2.40ch02:40221696..40223849- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028355g0002.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|380; (*GB) gi|255574486|ref|XP_002528155.1| (e_value=5e-148) UDP-glucosyltransferase, putative [Ricinus communis];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=1e-106) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21800.1 (e_value=1e-95) | Symbols: UGT71B8 | UDP-glucosyl transferase 71B8 | chr3:7680243-7681685 REVERSE LENGTH=480;; (*ITAG) Solyc02g081690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40129546-40130991 transcript_region:SL2.40ch02:40129546..40130991+ go_terms:GO:0080043 functional_description:"Glucosyltransferase (AHRD V1 **** Q94IF2_TOBAC); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00028355g0001.1 protein AED:0.30 eAED:0.32 QI:0|0|0|1|1|1|3|0|418; (*GB) gi|357449157|ref|XP_003594855.1| (e_value=1e-168) High affinity cationic amino acid transporter [Medicago truncatula];; (*SWP) sp|O64759|CAAT5_ARATH (e_value=2e-151) Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1;; (*TAIR) AT2G34960.1 (e_value=2e-152) | Symbols: CAT5 | cationic amino acid transporter 5 | chr2:14744175-14745884 REVERSE LENGTH=569;; (*ITAG) Solyc12g011370.1.1 (e_value=9e-121) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4203735-4205588 transcript_region:SL2.40ch12:4203735..4205588- go_terms:GO:0016020 functional_description:"Amino acid transporter (AHRD V1 ***- C2SWS0_BACCE); contains Interpro domain(s) IPR015606 Cationic amino acid transporter "; GO:0016020 NbS00028355g0020.1 protein AED:0.44 eAED:0.47 QI:0|0.42|0.62|0.75|0.28|0.5|8|0|235; (*GB) gi|225423593|ref|XP_002275625.1| (e_value=6e-62) PREDICTED: mitochondrial translocator assembly and maintenance protein 41 homolog [Vitis vinifera];; (*TAIR) AT3G47630.2 (e_value=6e-61) | Symbols: | CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:17563254-17565162 REVERSE LENGTH=332;; (*ITAG) Solyc02g081840.2.1 (e_value=2e-84) genomic_reference:SL2.40ch02 gene_region:40211209-40215580 transcript_region:SL2.40ch02:40211209..40215580+ go_terms:GO:0005515 functional_description:"MMP37-like protein mitochondrial (AHRD V1 ***- C1C198_9MAXI); contains Interpro domain(s) IPR015222 Mitochondrial matrix Mmp37 "; GO:0005515 NbS00028355g0019.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0|0|2|0|468; (*GB) gi|207083721|gb|ACI23252.1| (e_value=0.0) ANANTHA [Solanum lycopersicum];; (*SWP) sp|Q39090|UFO_ARATH (e_value=2e-169) Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2;; (*TAIR) AT1G30950.1 (e_value=2e-170) | Symbols: UFO | F-box family protein | chr1:11036180-11037508 FORWARD LENGTH=442;; (*ITAG) Solyc02g081670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40120235-40121602 transcript_region:SL2.40ch02:40120235..40121602+ go_terms:GO:0008134,GO:0004842 functional_description:"Fimbriata (Fragment) (AHRD V1 **-- Q6QVW9_MIMLE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0008134,GO:0004842 NbS00052264g0003.1 protein AED:0.00 eAED:0.00 QI:37|1|1|1|1|1|2|193|198; (*GB) gi|147818981|emb|CAN67122.1| (e_value=5e-38) hypothetical protein VITISV_017486 [Vitis vinifera];; (*TAIR) AT4G13540.1 (e_value=5e-18) | Symbols: | unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:7869896-7870604 FORWARD LENGTH=210;; (*ITAG) Solyc12g097060.1.1 (e_value=2e-62) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64046034-64047345 transcript_region:SL2.40ch12:64046034..64047345- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIR5_ARATH)"; NbS00051419g0001.1 protein AED:0.09 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|864; (*GB) gi|255586864|ref|XP_002534042.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G35870.1 (e_value=0.0) | Symbols: | early-responsive to dehydration stress protein (ERD4) | chr4:16990332-16992785 FORWARD LENGTH=817;; (*ITAG) Solyc02g083430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41421699-41424194 transcript_region:SL2.40ch02:41421699..41424194+ go_terms:GO:0016020 functional_description:"Transmembrane protein 63C (AHRD V1 *-*- TM63C_MOUSE); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00008494g0014.1 protein AED:0.37 eAED:0.51 QI:0|0.2|0.16|1|1|1|6|122|209; (*GB) gi|149941651|dbj|BAF64847.1| (e_value=6e-61) Cdc27B [Nicotiana benthamiana];; (*SWP) sp|Q8LGU6|CD27B_ARATH (e_value=8e-53) Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1;; (*TAIR) AT2G20000.1 (e_value=6e-54) | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744;; (*ITAG) Solyc03g061600.2.1 (e_value=1e-61) genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbS00008494g0010.1 protein AED:0.10 eAED:0.17 QI:0|0.33|0|1|0.33|0|4|0|816; (*GB) gi|225458036|ref|XP_002280360.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Vitis vinifera];; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1;; (*TAIR) AT1G25360.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790;; (*ITAG) Solyc04g082870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017817g0005.1 protein AED:0.16 eAED:0.23 QI:0|0|0|1|0|0.2|5|0|496; (*GB) gi|164598916|gb|ABY61745.1| (e_value=2e-54) resistance protein PSH-RGH6 [Solanum tuberosum];; (*SWP) sp|Q6L3Y2|R1B11_SOLDE (e_value=9e-41) Putative late blight resistance protein homolog R1B-11 OS=Solanum demissum GN=R1B-11 PE=5 SV=1;; (*TAIR) AT1G53350.1 (e_value=2e-27) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc12g009450.1.1 (e_value=3e-57) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2714559-2719247 transcript_region:SL2.40ch12:2714559..2719247+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00004699g0006.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|93; (*GB) gi|27529728|dbj|BAC53893.1| (e_value=4e-29) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|O64637|C76C2_ARATH (e_value=1e-18) Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1;; (*TAIR) AT2G45570.1 (e_value=1e-19) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc09g098030.2.1 (e_value=3e-29) genomic_reference:SL2.40ch09 gene_region:67217201-67219299 transcript_region:SL2.40ch09:67217201..67219299+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004699g0013.1 protein AED:0.08 eAED:0.08 QI:34|0|1|1|1|1|2|422|433; (*GB) gi|357474303|ref|XP_003607436.1| (e_value=1e-123) Cytochrome P450 [Medicago truncatula];; (*SWP) sp|O64637|C76C2_ARATH (e_value=6e-83) Cytochrome P450 76C2 OS=Arabidopsis thaliana GN=CYP76C2 PE=2 SV=1;; (*TAIR) AT2G45570.1 (e_value=4e-84) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc09g098030.2.1 (e_value=4e-120) genomic_reference:SL2.40ch09 gene_region:67217201-67219299 transcript_region:SL2.40ch09:67217201..67219299+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00004699g0014.1 protein AED:0.35 eAED:0.39 QI:0|0.37|0.44|0.88|0.75|0.66|9|0|542; (*GB) gi|225433674|ref|XP_002266027.1| (e_value=0.0) PREDICTED: auxin-induced protein PCNT115 isoform 1 [Vitis vinifera];; (*SWP) sp|P40691|A115_TOBAC (e_value=0.0) Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G60710.1 (e_value=0.0) | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345;; (*ITAG) Solyc09g097970.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:67192761-67196455 transcript_region:SL2.40ch09:67192761..67196455+ go_terms:GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00017255g0005.1 protein AED:0.04 eAED:0.04 QI:185|0.75|1|1|1|1|5|232|218; (*GB) gi|297828237|ref|XP_002882001.1| (e_value=3e-132) hypothetical protein ARALYDRAFT_903960 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O22151|GOS12_ARATH (e_value=4e-128) Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2;; (*TAIR) AT2G45200.1 (e_value=1e-133) | Symbols: GOS12, ATGOS12 | golgi snare 12 | chr2:18637689-18639640 REVERSE LENGTH=239;; (*ITAG) Solyc01g091020.2.1 (e_value=4e-143) genomic_reference:SL2.40ch01 gene_region:76486794-76494482 transcript_region:SL2.40ch01:76486794..76494482- go_terms:GO:0000149,GO:0005484 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 **** B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149,GO:0005484 NbS00000505g0005.1 protein AED:0.09 eAED:0.14 QI:0|0|0|1|0.66|0.5|4|0|589; (*GB) gi|356523179|ref|XP_003530219.1| (e_value=0.0) PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=0.0) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=0.0) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc10g084860.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63570163-63572223 transcript_region:SL2.40ch10:63570163..63572223- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00024703g0005.1 protein AED:0.42 eAED:0.47 QI:66|0.4|0.66|1|0.6|0.5|6|119|150; (*GB) gi|255545998|ref|XP_002514059.1| (e_value=4e-50) map3k delta-1 protein kinase, putative [Ricinus communis];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=9e-39) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT4G24480.1 (e_value=2e-51) | Symbols: | Protein kinase superfamily protein | chr4:12650410-12654755 FORWARD LENGTH=956;; (*ITAG) Solyc04g076480.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:58934431-58942365 transcript_region:SL2.40ch04:58934431..58942365- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_COTJA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00024703g0003.1 protein AED:0.15 eAED:0.17 QI:123|0|0.5|1|0|0.5|2|0|479; (*GB) gi|224106708|ref|XP_002314255.1| (e_value=4e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0V865|FAFL_ARATH (e_value=7e-45) Protein FAF-like, chloroplastic OS=Arabidopsis thaliana GN=At5g22090 PE=2 SV=1;; (*TAIR) AT5G22090.2 (e_value=6e-46) | Symbols: | Protein of unknown function (DUF3049) | chr5:7315003-7316394 REVERSE LENGTH=463;; (*ITAG) Solyc01g009270.1.1 (e_value=3e-84) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:3291820-3293241 transcript_region:SL2.40ch01:3291820..3293241- functional_description:"Unknown Protein (AHRD V1)"; NbS00040015g0004.1 protein AED:0.11 eAED:0.11 QI:6|1|1|1|1|1|3|199|294; (*GB) gi|225457993|ref|XP_002280044.1| (e_value=8e-55) PREDICTED: uncharacterized protein LOC100250489 [Vitis vinifera];; (*TAIR) AT2G45250.1 (e_value=3e-22) | Symbols: | Integral membrane protein hemolysin-III homolog | chr2:18661464-18662550 FORWARD LENGTH=204;; (*ITAG) Solyc04g082450.2.1 (e_value=1e-148) genomic_reference:SL2.40ch04 gene_region:63692397-63695176 transcript_region:SL2.40ch04:63692397..63695176+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016783g0007.1 protein AED:0.01 eAED:0.02 QI:0|1|0.5|1|0|0.5|2|0|180; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q9T076|ENL2_ARATH (e_value=3e-34) Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1;; (*TAIR) AT4G32490.1 (e_value=3e-37) | Symbols: ENODL4, AtENODL4 | early nodulin-like protein 4 | chr4:15678811-15679556 REVERSE LENGTH=221;; (*ITAG) Solyc07g053880.1.1 (e_value=4e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00016783g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.5|0|0.66|1|1|3|0|194; (*GB) gi|302143942|emb|CBI23047.3| (e_value=9e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G21320.2 (e_value=6e-16) | Symbols: | nucleotide binding;nucleic acid binding | chr1:7462834-7466164 REVERSE LENGTH=253;; (*ITAG) Solyc03g082710.2.1 (e_value=7e-76) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00048234g0011.1 protein AED:0.15 eAED:0.15 QI:0|0.75|0.8|1|1|1|5|30|326; (*GB) gi|147816530|emb|CAN68394.1| (e_value=2e-133) hypothetical protein VITISV_042519 [Vitis vinifera];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=4e-46) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G44680.1 (e_value=4e-124) | Symbols: | DNA glycosylase superfamily protein | chr5:18024461-18025893 REVERSE LENGTH=353;; (*ITAG) Solyc02g082120.2.1 (e_value=2e-158) genomic_reference:SL2.40ch02 gene_region:40419675-40422095 transcript_region:SL2.40ch02:40419675..40422095+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6TPB7_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00048234g0009.1 protein AED:0.21 eAED:0.21 QI:0|1|0.33|1|0.5|0.33|3|0|401; (*GB) gi|297738182|emb|CBI27383.3| (e_value=7e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G20160.1 (e_value=1e-15) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 64917 Blast hits to 39974 proteins in 1949 species: Archae - 279; Bacteria - 7425; Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses - 275; Other Eukaryotes - 21353 (source: NCBI BLink). | chr4:10890983-10894971 FORWARD LENGTH=1188;; (*ITAG) Solyc10g005220.2.1 (e_value=1e-101) genomic_reference:SL2.40ch10 gene_region:174813-180475 transcript_region:SL2.40ch10:174813..180475- go_terms:GO:0008270 functional_description:"Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00048234g0010.1 protein AED:0.47 eAED:1.00 QI:0|0|0|1|1|1|2|0|61 NbS00027216g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|162; (*GB) gi|147779554|emb|CAN61164.1| (e_value=3e-55) hypothetical protein VITISV_001394 [Vitis vinifera];; (*TAIR) AT5G60680.1 (e_value=1e-45) | Symbols: | Protein of unknown function, DUF584 | chr5:24386247-24386738 FORWARD LENGTH=163;; (*ITAG) Solyc11g069450.1.1 (e_value=9e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51115589-51116110 transcript_region:SL2.40ch11:51115589..51116110+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 **-- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00024352g0004.1 protein AED:0.75 eAED:0.75 QI:0|0|0|0.33|1|1|3|0|77 NbS00024352g0005.1 protein AED:0.36 eAED:0.36 QI:0|0.2|0.5|1|0.8|0.66|6|812|295; (*GB) gi|225446146|ref|XP_002276463.1| (e_value=7e-103) PREDICTED: MATE efflux family protein 9 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=4e-40) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT2G34360.1 (e_value=2e-78) | Symbols: | MATE efflux family protein | chr2:14507294-14510231 FORWARD LENGTH=480;; (*ITAG) Solyc04g009790.2.1 (e_value=2e-127) genomic_reference:SL2.40ch04 gene_region:3090794-3100196 transcript_region:SL2.40ch04:3090794..3100196- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0016020 NbS00024352g0008.1 protein AED:0.44 eAED:0.52 QI:12|0.2|0|1|0.4|0.33|6|0|230; (*GB) gi|224117574|ref|XP_002331670.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWF5|MATE9_ARATH (e_value=2e-25) MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1;; (*TAIR) AT1G73700.1 (e_value=3e-46) | Symbols: | MATE efflux family protein | chr1:27717554-27719630 REVERSE LENGTH=476;; (*ITAG) Solyc07g006730.2.1 (e_value=5e-66) genomic_reference:SL2.40ch07 gene_region:1574894-1577909 transcript_region:SL2.40ch07:1574894..1577909+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_CITK8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00052629g0004.1 protein AED:0.18 eAED:0.18 QI:170|0.66|1|1|1|1|4|61|281; (*GB) gi|359489616|ref|XP_002267348.2| (e_value=4e-129) PREDICTED: (+)-neomenthol dehydrogenase-like [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=2e-126) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.2 (e_value=5e-128) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=303;; (*ITAG) Solyc01g094220.2.1 (e_value=7e-161) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00039262g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|0|0.5|2|216|133; (*GB) gi|224131696|ref|XP_002321155.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VY93|GDL66_ARATH (e_value=3e-50) GDSL esterase/lipase At4g26790 OS=Arabidopsis thaliana GN=At4g26790 PE=2 SV=1;; (*TAIR) AT4G26790.2 (e_value=3e-51) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:13487859-13489149 FORWARD LENGTH=351;; (*ITAG) Solyc07g049440.2.1 (e_value=6e-84) genomic_reference:SL2.40ch07 gene_region:57033056-57036399 transcript_region:SL2.40ch07:57033056..57036399+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At2g04570 (AHRD V1 ***- GDL34_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00039262g0005.1 protein AED:0.28 eAED:0.28 QI:0|0|0|0.5|1|1|2|0|113; (*ITAG) Solyc01g108640.1.1 (e_value=3e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00039262g0004.1 protein AED:0.29 eAED:0.30 QI:0|0.75|0.66|1|1|1|9|0|442; (*GB) gi|356501255|ref|XP_003519441.1| (e_value=0.0) PREDICTED: protein disulfide isomerase-like 2-3-like [Glycine max];; (*SWP) sp|Q9MAU6|PDI22_ARATH (e_value=0.0) Protein disulfide-isomerase like 2-2 OS=Arabidopsis thaliana GN=PDIL2-2 PE=2 SV=2;; (*TAIR) AT1G04980.1 (e_value=0.0) | Symbols: ATPDIL2-2, ATPDI10, PDI10, PDIL2-2 | PDI-like 2-2 | chr1:1413869-1416120 REVERSE LENGTH=447;; (*ITAG) Solyc07g049450.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:57040844-57048137 transcript_region:SL2.40ch07:57040844..57048137- go_terms:GO:0003756 functional_description:"Thioredoxin/protein disulfide isomerase (AHRD V1 **-* D3TLX2_GLOMM); contains Interpro domain(s) IPR005788 Disulphide isomerase "; GO:0003756 NbC24368540g0001.1 protein AED:0.16 eAED:0.24 QI:28|-1|0|1|-1|0|1|0|83; (*GB) gi|296081998|emb|CBI21003.3| (e_value=4e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV46|PP282_ARATH (e_value=2e-16) Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1;; (*TAIR) AT3G54980.1 (e_value=1e-17) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:20370293-20372848 FORWARD LENGTH=851;; (*ITAG) Solyc08g067060.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:53188616-53191168 transcript_region:SL2.40ch08:53188616..53191168- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUZ6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00048824g0006.1 protein AED:0.20 eAED:0.22 QI:0|0.5|0.55|0.88|0.25|0.33|9|398|358; (*GB) gi|14787784|emb|CAC44257.1| (e_value=0.0) FtsZ-like protein [Nicotiana tabacum];; (*SWP) sp|Q9LXJ0|FTZ22_ARATH (e_value=7e-157) Cell division protein FtsZ homolog 2-2, chloroplastic OS=Arabidopsis thaliana GN=FTSZ2-2 PE=1 SV=1;; (*TAIR) AT3G52750.1 (e_value=6e-158) | Symbols: FTSZ2-2 | Tubulin/FtsZ family protein | chr3:19549841-19552435 REVERSE LENGTH=473;; (*ITAG) Solyc09g009430.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2862256-2879815 transcript_region:SL2.40ch09:2862256..2879815- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B0BYG5_ACAM1); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00001671g0001.1 protein AED:0.06 eAED:0.06 QI:81|0.66|0.25|1|1|1|4|0|147; (*GB) gi|225449489|ref|XP_002283485.1| (e_value=9e-61) PREDICTED: elicitor-responsive protein 1 [Vitis vinifera];; (*SWP) sp|Q0JHU5|ERG1_ORYSJ (e_value=1e-44) Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1;; (*TAIR) AT3G55470.2 (e_value=9e-49) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:20564356-20566092 FORWARD LENGTH=155;; (*ITAG) Solyc04g011540.2.1 (e_value=2e-86) genomic_reference:SL2.40ch04 gene_region:3971870-3974807 transcript_region:SL2.40ch04:3971870..3974807+ functional_description:"Elicitor-responsive protein 1 (AHRD V1 **-- B6T411_MAIZE); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00001671g0013.1 protein AED:0.09 eAED:0.09 QI:96|1|1|1|1|1|4|433|188; (*GB) gi|225437975|ref|XP_002272086.1| (e_value=6e-91) PREDICTED: uncharacterized protein LOC100265138 isoform 1 [Vitis vinifera];; (*TAIR) AT2G20390.1 (e_value=8e-70) | Symbols: | unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8796475-8798142 REVERSE LENGTH=183;; (*ITAG) Solyc04g011530.2.1 (e_value=2e-120) genomic_reference:SL2.40ch04 gene_region:3961600-3968559 transcript_region:SL2.40ch04:3961600..3968559+ functional_description:"Os04g0129600 protein (Fragment) (AHRD V1 ***- Q0JF81_ORYSJ)"; NbS00001671g0016.1 protein AED:0.33 eAED:0.33 QI:12|0.8|0.66|1|1|1|6|0|378; (*GB) gi|255584865|ref|XP_002533148.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q06548|APK1A_ARATH (e_value=8e-170) Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1;; (*TAIR) AT1G07570.1 (e_value=6e-171) | Symbols: APK1A, APK1 | Protein kinase superfamily protein | chr1:2331369-2333210 REVERSE LENGTH=410;; (*ITAG) Solyc04g011520.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3956690-3961315 transcript_region:SL2.40ch04:3956690..3961315+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase-like protein ABC1063 (AHRD V1 **** Q1KMP8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00001671g0019.1 protein AED:0.51 eAED:0.86 QI:6|0|0.33|1|0|0.33|3|0|96; (*GB) gi|41176619|gb|AAR99599.1| (e_value=2e-27) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q69Q02|DPE2_ORYSJ (e_value=6e-17) 4-alpha-glucanotransferase DPE2 OS=Oryza sativa subsp. japonica GN=DPE2 PE=2 SV=1;; (*TAIR) AT2G40840.1 (e_value=8e-18) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=6e-31) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00001671g0102.1 protein AED:0.13 eAED:0.14 QI:275|0.8|0.81|1|0.9|0.81|11|309|776 NbS00006757g0009.1 protein AED:0.16 eAED:0.17 QI:0|0.95|0.95|1|0.76|0.81|43|202|1914; (*GB) gi|224062688|ref|XP_002300874.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SHJ3|CALS7_ARATH (e_value=0.0) Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=3;; (*TAIR) AT1G06490.1 (e_value=0.0) | Symbols: ATGSL07, gsl07, atgsl7, GSL7 | glucan synthase-like 7 | chr1:1978762-1989295 FORWARD LENGTH=1958;; (*ITAG) Solyc07g056260.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbC24006085g0001.1 protein AED:0.25 eAED:0.26 QI:78|-1|0|1|-1|1|1|0|57; (*GB) gi|77999295|gb|ABB16994.1| (e_value=7e-22) unknown [Solanum tuberosum];; (*SWP) sp|P09205|TBA2_CHLRE (e_value=4e-23) Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1;; (*TAIR) AT5G19780.1 (e_value=3e-24) | Symbols: TUA5 | tubulin alpha-5 | chr5:6687212-6688926 FORWARD LENGTH=450;; (*ITAG) Solyc02g091870.2.1 (e_value=4e-23) genomic_reference:SL2.40ch02 gene_region:47685625-47687676 transcript_region:SL2.40ch02:47685625..47687676+ go_terms:GO:0046982 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982 NbS00022787g0007.1 protein AED:0.21 eAED:0.22 QI:0|0.8|0.83|1|1|1|6|0|170; (*GB) gi|384081612|ref|NP_001244910.1| (e_value=2e-98) cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Solanum lycopersicum];; (*SWP) sp|Q8GW29|LOG7_ARATH (e_value=7e-85) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2;; (*TAIR) AT5G06300.1 (e_value=5e-86) | Symbols: | Putative lysine decarboxylase family protein | chr5:1922042-1925278 REVERSE LENGTH=217;; (*ITAG) Solyc10g082020.1.1 (e_value=4e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62254561-62258072 transcript_region:SL2.40ch10:62254561..62258072+ go_terms:GO:0016831,GO:0042803 functional_description:"Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (AHRD V1 **-- LOG_ORYSJ); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00022787g0012.1 protein AED:0.20 eAED:0.20 QI:0|0.5|0.4|0.8|0.25|0.6|5|0|247; (*GB) gi|225440741|ref|XP_002281038.1| (e_value=5e-75) PREDICTED: HVA22-like protein j [Vitis vinifera];; (*SWP) sp|Q8LE10|HA22I_ARATH (e_value=4e-67) HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2;; (*TAIR) AT5G42560.1 (e_value=3e-68) | Symbols: | Abscisic acid-responsive (TB2/DP1, HVA22) family protein | chr5:17015573-17016969 FORWARD LENGTH=296;; (*ITAG) Solyc10g082040.1.1 (e_value=2e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62264261-62265744 transcript_region:SL2.40ch10:62264261..62265744- functional_description:"Receptor expression-enhancing protein 3 (AHRD V1 **-- B6TB01_MAIZE); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; NbS00022787g0008.1 protein AED:0.33 eAED:0.33 QI:0|1|0.85|1|1|1|7|0|270; (*GB) gi|21912927|emb|CAC84143.2| (e_value=0.0) thioredoxin peroxidase [Nicotiana tabacum];; (*SWP) sp|Q9C5R8|BAS1B_ARATH (e_value=2e-139) 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=3;; (*TAIR) AT5G06290.1 (e_value=2e-140) | Symbols: 2-Cys Prx B, 2CPB | 2-cysteine peroxiredoxin B | chr5:1919380-1921211 FORWARD LENGTH=273;; (*ITAG) Solyc10g082030.1.1 (e_value=2e-173) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62258959-62262932 transcript_region:SL2.40ch10:62258959..62262932- go_terms:GO:0016491,GO:0045454,GO:0051920 functional_description:"Peroxiredoxin (AHRD V1 **-- Q9FE12_PHAVU); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454,GO:0051920 NbS00026396g0008.1 protein AED:0.18 eAED:0.24 QI:150|0.42|0.62|1|0.57|0.62|8|330|322; (*GB) gi|297742337|emb|CBI34486.3| (e_value=4e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G23895.2 (e_value=1e-47) | Symbols: | Pleckstrin homology (PH) domain-containing protein | chr4:12422883-12424146 FORWARD LENGTH=247;; (*ITAG) Solyc12g055950.1.1 (e_value=9e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47296101-47301387 transcript_region:SL2.40ch12:47296101..47301387- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; NbS00026396g0003.1 protein AED:0.37 eAED:0.37 QI:0|0.75|0.8|1|1|1|5|370|243; (*GB) gi|147766222|emb|CAN60038.1| (e_value=8e-78) hypothetical protein VITISV_007803 [Vitis vinifera];; (*TAIR) AT1G64430.2 (e_value=2e-67) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23933541-23936336 FORWARD LENGTH=559;; (*ITAG) Solyc12g055940.1.1 (e_value=6e-97) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47287938-47294874 transcript_region:SL2.40ch12:47287938..47294874- functional_description:"Unknown Protein (AHRD V1)"; NbS00004977g0001.1 protein AED:0.08 eAED:0.82 QI:167|0|0.5|1|0|0.5|2|0|227; (*GB) gi|356556416|ref|XP_003546522.1| (e_value=3e-31) PREDICTED: uncharacterized protein LOC100817225 [Glycine max];; (*TAIR) AT5G20790.1 (e_value=2e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7040046-7040627 REVERSE LENGTH=193; NbS00019559g0001.1 protein AED:0.12 eAED:0.12 QI:200|1|1|1|0.6|0.5|6|342|212; (*GB) gi|255552065|ref|XP_002517077.1| (e_value=5e-73) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G14746.1 (e_value=2e-54) | Symbols: | CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE LENGTH=212;; (*ITAG) Solyc09g082570.2.1 (e_value=4e-103) genomic_reference:SL2.40ch09 gene_region:63693229-63695838 transcript_region:SL2.40ch09:63693229..63695838+ functional_description:"Neurogenic locus notch protein-like (AHRD V1 ***- B6SSE6_MAIZE)"; NbS00036485g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.85|0.62|0.87|0.85|0.75|8|431|203; (*GB) gi|40287468|gb|AAR83848.1| (e_value=2e-106) ribosomal protein PETRP [Capsicum annuum];; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=2e-95) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=2e-96) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071870.2.1 (e_value=3e-104) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- go_terms:GO:0003735 functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "; GO:0003735 NbS00036485g0007.1 protein AED:0.00 eAED:0.00 QI:108|1|1|1|0|0|2|386|634; (*GB) gi|359495698|ref|XP_003635064.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FIF7|PP435_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1;; (*TAIR) AT5G59200.1 (e_value=0.0) | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23888793-23890427 REVERSE LENGTH=544;; (*ITAG) Solyc03g111210.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55894950-55898197 transcript_region:SL2.40ch03:55894950..55898197- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MAN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00044378g0005.1 protein AED:0.17 eAED:0.17 QI:234|1|0.87|1|1|1|8|0|514; (*GB) gi|255573881|ref|XP_002527859.1| (e_value=0.0) Sialin, putative [Ricinus communis];; (*SWP) sp|Q7XJR2|ANTR3_ARATH (e_value=0.0) Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2;; (*TAIR) AT2G38060.1 (e_value=0.0) | Symbols: PHT4;2 | phosphate transporter 4;2 | chr2:15922727-15925623 REVERSE LENGTH=512;; (*ITAG) Solyc09g013150.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5552677-5558428 transcript_region:SL2.40ch09:5552677..5558428- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter 3 (AHRD V1 **-* B5AU16_DANRE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00000042g0001.1 protein AED:0.20 eAED:0.23 QI:0|0|0|1|1|1|2|0|416; (*GB) gi|147846526|emb|CAN81650.1| (e_value=0.0) hypothetical protein VITISV_003752 [Vitis vinifera];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=1e-141) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20840.1 (e_value=3e-155) | Symbols: | FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539;; (*ITAG) Solyc02g022850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:14916195-14917820 transcript_region:SL2.40ch02:14916195..14917820- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00026391g0003.1 protein AED:0.14 eAED:0.14 QI:270|0.88|0.8|1|0.88|0.8|10|315|669; (*GB) gi|350538933|ref|NP_001233854.1| (e_value=0.0) telomere binding protein [Solanum lycopersicum];; (*SWP) sp|Q9FFY9|TRP4_ARATH (e_value=8e-125) Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1;; (*TAIR) AT5G13820.1 (e_value=6e-126) | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | telomeric DNA binding protein 1 | chr5:4461694-4464355 FORWARD LENGTH=640;; (*ITAG) Solyc04g011650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4115805-4119204 transcript_region:SL2.40ch04:4115805..4119204- go_terms:GO:0003691 functional_description:"Telomere repeat-binding protein 4 (AHRD V1 **** TRP4_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003691 NbS00026391g0009.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0|2|0|775; (*GB) gi|255581525|ref|XP_002531568.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XE58|SCL14_ARATH (e_value=0.0) Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2;; (*TAIR) AT1G07530.1 (e_value=0.0) | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 | chr1:2313828-2316137 REVERSE LENGTH=769;; (*ITAG) Solyc05g053090.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:62357486-62359717 transcript_region:SL2.40ch05:62357486..62359717- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9HMJ2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00004225g0001.1 protein AED:0.34 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-20) hypothetical protein [Nicotiana tabacum]; NbS00007229g0005.1 protein AED:0.13 eAED:0.14 QI:0|0|0|1|1|1|2|0|458; (*GB) gi|350536665|ref|NP_001234514.1| (e_value=0.0) sterol 22-desaturase [Solanum lycopersicum];; (*SWP) sp|O64697|C7101_ARATH (e_value=0.0) Cytochrome P450 710A1 OS=Arabidopsis thaliana GN=CYP710A1 PE=1 SV=1;; (*TAIR) AT2G34500.1 (e_value=0.0) | Symbols: CYP710A1 | cytochrome P450, family 710, subfamily A, polypeptide 1 | chr2:14539712-14541199 REVERSE LENGTH=495;; (*ITAG) Solyc02g070580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:34885987-34887492 transcript_region:SL2.40ch02:34885987..34887492+ go_terms:GO:0019825,GO:0000249 functional_description:"Cytochrome p450"; GO:0019825,GO:0000249 NbS00007229g0115.1 protein AED:0.00 eAED:0.00 QI:129|1|1|1|0|0|2|141|374 NbS00007229g0114.1 protein AED:0.06 eAED:0.06 QI:0|0|0.25|0.75|0|0|4|83|626 NbS00045244g0010.1 protein AED:0.08 eAED:0.08 QI:78|1|0.8|1|1|1|5|271|367; (*GB) gi|1842188|emb|CAA69726.1| (e_value=8e-173) mitochondrial phosphate translocator [Betula pendula];; (*SWP) sp|Q8VEM8|MPCP_MOUSE (e_value=8e-97) Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1;; (*TAIR) AT5G14040.1 (e_value=6e-166) | Symbols: PHT3;1 | phosphate transporter 3;1 | chr5:4531059-4532965 REVERSE LENGTH=375;; (*ITAG) Solyc03g097840.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53614811-53617119 transcript_region:SL2.40ch03:53614811..53617119- go_terms:GO:0005315 functional_description:"Mitochondrial phosphate carrier protein (AHRD V1 **** B9GFH9_POPTR); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005315 NbS00045244g0011.1 protein AED:0.29 eAED:0.29 QI:120|0.69|0.64|1|0.61|0.64|14|166|493; (*GB) gi|255540089|ref|XP_002511109.1| (e_value=0.0) poly(A) polymerase, putative [Ricinus communis];; (*SWP) sp|P44439|PCNB_HAEIN (e_value=3e-23) Probable poly(A) polymerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pcnB PE=3 SV=1;; (*TAIR) AT5G23690.1 (e_value=2e-178) | Symbols: | Polynucleotide adenylyltransferase family protein | chr5:7987664-7990466 FORWARD LENGTH=527;; (*ITAG) Solyc03g097830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53606572-53614598 transcript_region:SL2.40ch03:53606572..53614598+ go_terms:GO:0006396 functional_description:"Poly(A) polymerase (AHRD V1 ***- C3X539_OXAFO); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00024131g0006.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|4|0|684; (*GB) gi|359488350|ref|XP_002279064.2| (e_value=0.0) PREDICTED: ATP-dependent zinc metalloprotease FtsH-like [Vitis vinifera];; (*SWP) sp|D1CDT8|FTSH_THET1 (e_value=6e-91) ATP-dependent zinc metalloprotease FtsH OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) GN=ftsH PE=3 SV=1;; (*TAIR) AT3G02450.1 (e_value=0.0) | Symbols: | cell division protein ftsH, putative | chr3:502876-505030 REVERSE LENGTH=622;; (*ITAG) Solyc03g046340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:16268319-16276165 transcript_region:SL2.40ch03:16268319..16276165- go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0004176 NbS00035824g0008.1 protein AED:0.13 eAED:0.13 QI:292|1|1|1|1|1|3|466|245; (*GB) gi|255588387|ref|XP_002534590.1| (e_value=3e-83) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LK95|MYB21_ARATH (e_value=4e-58) Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1;; (*TAIR) AT1G68320.1 (e_value=2e-73) | Symbols: MYB62, AtMYB62, BW62B, BW62C | myb domain protein 62 | chr1:25603842-25604884 FORWARD LENGTH=286;; (*ITAG) Solyc03g119370.1.1 (e_value=5e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62052377-62053490 transcript_region:SL2.40ch03:62052377..62053490- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9C9G7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00035824g0005.1 protein AED:0.14 eAED:0.16 QI:0|0|0|0.83|1|1|6|0|826; (*GB) gi|297736093|emb|CBI24131.3| (e_value=5e-174) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9Y5Q9|TF3C3_HUMAN (e_value=2e-17) General transcription factor 3C polypeptide 3 OS=Homo sapiens GN=GTF3C3 PE=1 SV=1;; (*TAIR) AT1G17680.2 (e_value=4e-105) | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr1:6076388-6082160 FORWARD LENGTH=896;; (*ITAG) Solyc06g063420.2.1 (e_value=1e-164) genomic_reference:SL2.40ch06 gene_region:36475902-36493708 transcript_region:SL2.40ch06:36475902..36493708- go_terms:GO:0005488 functional_description:"Tfc4p like TFIIIC subunit TPR repeat containing basal transcription factor (AHRD V1 *--- Q5CRV9_CRYPV); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00038637g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|147858321|emb|CAN81423.1| (e_value=2e-25) hypothetical protein VITISV_035943 [Vitis vinifera];; (*TAIR) AT2G26520.1 (e_value=4e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11280280-11280717 FORWARD LENGTH=145;; (*ITAG) Solyc01g108330.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:87440624-87441428 transcript_region:SL2.40ch01:87440624..87441428+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011374g0004.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|168; (*GB) gi|18203447|sp|Q9SPV5.1|NEC1_NICPL (e_value=2e-52) RecName: Full=Nectarin-1; AltName: Full=Superoxide dismutase [Mn]; Flags: Precursor;; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=7e-54) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G02335.1 (e_value=3e-50) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc01g102390.2.1 (e_value=1e-52) genomic_reference:SL2.40ch01 gene_region:82977692-82979772 transcript_region:SL2.40ch01:82977692..82979772+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00011374g0001.1 protein AED:0.17 eAED:0.17 QI:0|0|0|0.5|1|1|2|0|229; (*GB) gi|40949663|gb|AAR97545.1| (e_value=2e-80) germin-like protein [Nicotiana attenuata];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=1e-78) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G09560.1 (e_value=7e-69) | Symbols: GLP5 | germin-like protein 5 | chr1:3093896-3094639 FORWARD LENGTH=219;; (*ITAG) Solyc01g102400.2.1 (e_value=1e-80) genomic_reference:SL2.40ch01 gene_region:82983065-82985492 transcript_region:SL2.40ch01:82983065..82985492+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00011374g0005.1 protein AED:0.37 eAED:0.37 QI:0|0|0|0.5|1|1|2|0|210; (*GB) gi|196122046|gb|ACG69497.1| (e_value=1e-52) germin-like protein 1 [Glycine max];; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=5e-52) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G02335.1 (e_value=4e-48) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc01g102390.2.1 (e_value=3e-53) genomic_reference:SL2.40ch01 gene_region:82977692-82979772 transcript_region:SL2.40ch01:82977692..82979772+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O65358_SOLTU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735,GO:0048046 NbS00001472g0010.1 protein AED:0.25 eAED:0.25 QI:497|1|0.75|1|1|1|4|0|367; (*GB) gi|302142727|emb|CBI19930.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LPL4|SKP2A_ARATH (e_value=0.0) F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1;; (*TAIR) AT1G21410.1 (e_value=0.0) | Symbols: SKP2A | F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360;; (*ITAG) Solyc04g063380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54633946-54637333 transcript_region:SL2.40ch04:54633946..54637333+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 2 (AHRD V1 ***- B6TAC3_MAIZE); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00001472g0009.1 protein AED:0.09 eAED:0.09 QI:86|0.75|0.77|1|1|1|9|160|382; (*GB) gi|302142728|emb|CBI19931.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GYX8|DNJ10_ARATH (e_value=1e-111) Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2;; (*TAIR) AT1G77020.1 (e_value=1e-179) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:28945056-28946867 REVERSE LENGTH=379;; (*ITAG) Solyc04g063390.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54638505-54641692 transcript_region:SL2.40ch04:54638505..54641692- go_terms:GO:0030544,GO:0051087 functional_description:"Chaperone protein dnaJ 10 (AHRD V1 **** B4G111_MAIZE); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0030544,GO:0051087 NbS00053872g0007.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|3|0|106; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-37) hypothetical protein [Nicotiana tabacum]; NbS00053872g0006.1 protein AED:0.41 eAED:0.41 QI:0|0|0|1|0|0|2|0|91; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-27) hypothetical protein [Nicotiana tabacum]; NbS00027062g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|255546113|ref|XP_002514116.1| (e_value=2e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G26110.1 (e_value=4e-30) | Symbols: | Protein of unknown function (DUF761) | chr2:11120869-11121798 FORWARD LENGTH=309;; (*ITAG) Solyc05g018820.1.1 (e_value=2e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:23992305-23992874 transcript_region:SL2.40ch05:23992305..23992874- functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 **-- Q9FGR3_ARATH)"; NbS00036740g0010.1 protein AED:0.03 eAED:0.03 QI:330|0.83|0.85|1|0.5|0.42|7|0|263; (*GB) gi|94466659|emb|CAJ44458.1| (e_value=3e-116) ALY protein [Nicotiana benthamiana];; (*SWP) sp|B5FXN8|THOC4_TAEGU (e_value=1e-27) THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1;; (*TAIR) AT1G66260.2 (e_value=9e-54) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:24695895-24697883 REVERSE LENGTH=295;; (*ITAG) Solyc04g014460.2.1 (e_value=2e-99) genomic_reference:SL2.40ch04 gene_region:4691348-4695742 transcript_region:SL2.40ch04:4691348..4695742+ go_terms:GO:0003729 functional_description:"RNA binding protein (AHRD V1 *--* C1N7F4_MICPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003729 NbS00036740g0011.1 protein AED:0.15 eAED:0.16 QI:10|0.76|0.64|1|0.69|0.71|14|0|561; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RJP2|RHIE_DICD3 (e_value=4e-17) Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1;; (*TAIR) AT2G22620.1 (e_value=0.0) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc04g014450.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4673135-4679100 transcript_region:SL2.40ch04:4673135..4679100- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00022906g0001.1 protein AED:0.12 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|636; (*GB) gi|255583964|ref|XP_002532729.1| (e_value=0.0) protein binding protein, putative [Ricinus communis];; (*TAIR) AT1G72470.1 (e_value=0.0) | Symbols: ATEXO70D1, EXO70D1 | exocyst subunit exo70 family protein D1 | chr1:27283759-27285660 FORWARD LENGTH=633;; (*ITAG) Solyc06g062990.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36145808-36147598 transcript_region:SL2.40ch06:36145808..36147598- go_terms:GO:0005515 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00000538g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|517; (*GB) gi|350537697|ref|NP_001234305.1| (e_value=0.0) GRAS1 protein [Solanum lycopersicum];; (*SWP) sp|Q9M0M5|SCL13_ARATH (e_value=0.0) Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2;; (*TAIR) AT4G17230.1 (e_value=0.0) | Symbols: SCL13 | SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529;; (*ITAG) Solyc11g012510.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5329768-5331396 transcript_region:SL2.40ch11:5329768..5331396- functional_description:"GRAS family transcription factor (AHRD V1 **-- B9IH45_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00000538g0012.1 protein AED:0.16 eAED:0.16 QI:824|1|1|1|0.5|0.33|3|357|225; (*GB) gi|224139494|ref|XP_002323139.1| (e_value=3e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FGK5|RAA5A_ARATH (e_value=1e-137) Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1;; (*TAIR) AT5G47520.1 (e_value=9e-139) | Symbols: AtRABA5a, RABA5a | RAB GTPase homolog A5A | chr5:19277596-19278366 REVERSE LENGTH=221;; (*ITAG) Solyc05g054150.2.1 (e_value=2e-153) genomic_reference:SL2.40ch05 gene_region:63253042-63255141 transcript_region:SL2.40ch05:63253042..63255141+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_MOUSE); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00000538g0015.1 protein AED:0.17 eAED:0.17 QI:233|0.9|0.90|1|0.9|1|11|486|325; (*GB) gi|225469268|ref|XP_002267661.1| (e_value=0.0) PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera];; (*SWP) sp|Q9FGK3|MO25N_ARATH (e_value=0.0) Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1;; (*TAIR) AT5G47540.1 (e_value=0.0) | Symbols: | Mo25 family protein | chr5:19283265-19285328 REVERSE LENGTH=343;; (*ITAG) Solyc05g054130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63235374-63242308 transcript_region:SL2.40ch05:63235374..63242308+ go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00000538g0003.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|66; (*GB) gi|255550069|ref|XP_002516085.1| (e_value=4e-11) calmodulin binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g062940.2.1 (e_value=3e-11) genomic_reference:SL2.40ch08 gene_region:49582645-49584764 transcript_region:SL2.40ch08:49582645..49584764+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00000836g0004.1 protein AED:0.12 eAED:0.12 QI:39|1|1|1|1|1|14|251|1076; (*GB) gi|225457723|ref|XP_002277713.1| (e_value=0.0) PREDICTED: probable cellulose synthase A catalytic subunit 5 [UDP-forming] [Vitis vinifera];; (*SWP) sp|Q851L8|CESA5_ORYSJ (e_value=0.0) Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc04g072790.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57357329-57361881 transcript_region:SL2.40ch04:57357329..57361881- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B8XPP7_9ROSI); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00018889g0001.1 protein AED:0.11 eAED:0.11 QI:240|0.66|0.75|1|0.33|0.5|4|1331|379; (*GB) gi|225434921|ref|XP_002280853.1| (e_value=4e-37) PREDICTED: uncharacterized protein LOC100253495 [Vitis vinifera];; (*TAIR) AT5G61910.3 (e_value=3e-21) | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24861091-24863741 REVERSE LENGTH=742;; (*ITAG) Solyc06g005570.2.1 (e_value=3e-72) genomic_reference:SL2.40ch06 gene_region:608436-615962 transcript_region:SL2.40ch06:608436..615962- functional_description:"Genomic DNA chromosome 5 TAC clone K22G18 (AHRD V1 *--- Q9FH52_ARATH); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00042831g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|28207685|gb|AAO32066.1| (e_value=1e-64) Erwinia induced protein 2 [Solanum tuberosum];; (*TAIR) AT5G17190.1 (e_value=2e-61) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5652310-5652702 FORWARD LENGTH=130;; (*ITAG) Solyc11g011010.1.1 (e_value=2e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4040728-4041120 transcript_region:SL2.40ch11:4040728..4041120+ functional_description:"Erwinia induced protein 2 (AHRD V1 ***- Q84XG6_SOLTU)"; NbS00010768g0010.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|0|0.5|2|0|96 NbS00010768g0011.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|3|0|210; (*GB) gi|225439014|ref|XP_002262789.1| (e_value=3e-62) PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera];; (*TAIR) AT5G10190.1 (e_value=8e-56) | Symbols: | Major facilitator superfamily protein | chr5:3199205-3201140 FORWARD LENGTH=488;; (*ITAG) Solyc04g055080.2.1 (e_value=7e-81) genomic_reference:SL2.40ch04 gene_region:52802031-52804119 transcript_region:SL2.40ch04:52802031..52804119+ go_terms:GO:0005351 functional_description:"Transporter major facilitator family (AHRD V1 ***- B5IUM5_9EURY); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00013310g0003.1 protein AED:0.24 eAED:0.24 QI:56|0|0.5|1|0|0|2|0|367; (*GB) gi|255571109|ref|XP_002526505.1| (e_value=1e-135) ATPUP11, putative [Ricinus communis];; (*SWP) sp|Q9LPF6|PUP11_ARATH (e_value=2e-124) Probable purine permease 11 OS=Arabidopsis thaliana GN=PUP11 PE=1 SV=1;; (*TAIR) AT1G44750.2 (e_value=7e-127) | Symbols: ATPUP11, PUP11 | purine permease 11 | chr1:16893825-16895168 FORWARD LENGTH=367;; (*ITAG) Solyc01g088550.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75092333-75095470 transcript_region:SL2.40ch01:75092333..75095470- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00004511g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|199; (*GB) gi|224122614|ref|XP_002318880.1| (e_value=2e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|P17407|21KD_DAUCA (e_value=3e-30) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G25250.1 (e_value=2e-37) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12934632-12935231 FORWARD LENGTH=199;; (*ITAG) Solyc03g083710.1.1 (e_value=3e-102) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47198994-47199581 transcript_region:SL2.40ch03:47198994..47199581- go_terms:GO:0030599 functional_description:"Pectinesterase/pectinesterase inhibitor U1 (AHRD V1 **-- PMEU1_SOLLC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00038882g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.83|1|1|1|6|0|311; (*GB) gi|225449855|ref|XP_002265000.1| (e_value=2e-135) PREDICTED: annexin D4 [Vitis vinifera];; (*SWP) sp|Q9ZVJ6|ANXD4_ARATH (e_value=5e-98) Annexin D4 OS=Arabidopsis thaliana GN=ANN4 PE=2 SV=1;; (*TAIR) AT2G38750.1 (e_value=4e-99) | Symbols: ANNAT4 | annexin 4 | chr2:16196582-16198431 REVERSE LENGTH=319;; (*ITAG) Solyc01g097520.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80105571-80107823 transcript_region:SL2.40ch01:80105571..80107823+ go_terms:GO:0005544 functional_description:"Annexin 11 (AHRD V1 ***- D6QX28_SOYBN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00013730g0019.1 protein AED:0.11 eAED:0.18 QI:0|0|0|1|0.25|0.2|5|0|382; (*GB) gi|164457703|dbj|BAF96582.1| (e_value=3e-90) lignan glucosyltransferase [Sesamum indicum];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=2e-75) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21790.1 (e_value=1e-66) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7676927-7678414 REVERSE LENGTH=495;; (*ITAG) Solyc07g043160.1.1 (e_value=4e-156) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54117285-54118607 transcript_region:SL2.40ch07:54117285..54118607+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0007.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|315; (*GB) gi|118488649|gb|ABK96136.1| (e_value=1e-108) unknown [Populus trichocarpa];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=5e-99) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT1G07240.1 (e_value=2e-93) | Symbols: UGT71C5 | UDP-glucosyl transferase 71C5 | chr1:2223889-2225331 FORWARD LENGTH=480;; (*ITAG) Solyc07g043050.1.1 (e_value=6e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53916578-53918008 transcript_region:SL2.40ch07:53916578..53918008- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **-* A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0014.1 protein AED:0.30 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|264; (*ITAG) Solyc01g073980.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:70566704-70567723 transcript_region:SL2.40ch01:70566704..70567723- functional_description:"Unknown Protein (AHRD V1)"; NbS00013730g0001.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|492; (*GB) gi|342306018|dbj|BAK55745.1| (e_value=8e-161) UDP-glucose glucosyltransferase [Gardenia jasminoides];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=2e-132) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21790.1 (e_value=1e-113) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7676927-7678414 REVERSE LENGTH=495;; (*ITAG) Solyc07g043120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54031759-54033231 transcript_region:SL2.40ch07:54031759..54033231+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0008.1 protein AED:0.38 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|283362120|dbj|BAI65913.1| (e_value=8e-154) UDP-sugar:glycosyltransferase [Forsythia x intermedia];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=9e-142) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT4G15280.1 (e_value=8e-118) | Symbols: UGT71B5 | UDP-glucosyl transferase 71B5 | chr4:8719182-8720618 FORWARD LENGTH=478;; (*ITAG) Solyc07g043110.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:54022806-54024245 transcript_region:SL2.40ch07:54022806..54024245+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0002.1 protein AED:0.44 eAED:0.46 QI:0|0|0|1|1|1|2|0|251; (*GB) gi|283362118|dbj|BAI65912.1| (e_value=8e-38) UDP-sugar:glycosyltransferase [Forsythia x intermedia];; (*SWP) sp|Q2V6K0|UFOG6_FRAAN (e_value=3e-37) UDP-glucose flavonoid 3-O-glucosyltransferase 6 OS=Fragaria ananassa GN=GT6 PE=1 SV=1;; (*TAIR) AT3G21760.1 (e_value=3e-28) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043150.1.1 (e_value=8e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54092928-54094376 transcript_region:SL2.40ch07:54092928..54094376+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0003.1 protein AED:0.48 eAED:0.48 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|14349251|dbj|BAB60720.1| (e_value=4e-28) glucosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9LSY8|U71B2_ARATH (e_value=2e-23) UDP-glycosyltransferase 71B2 OS=Arabidopsis thaliana GN=UGT71B2 PE=1 SV=1;; (*TAIR) AT3G21760.1 (e_value=1e-24) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043150.1.1 (e_value=6e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54092928-54094376 transcript_region:SL2.40ch07:54092928..54094376+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00013730g0020.1 protein AED:0.19 eAED:0.34 QI:0|0|0|1|0.33|0.25|4|0|324; (*GB) gi|156138819|dbj|BAF75901.1| (e_value=2e-58) tetrahydroxychalcone 2'-glucosyltransferase [Catharanthus roseus];; (*SWP) sp|Q66PF3|UFOG3_FRAAN (e_value=1e-49) Putative UDP-glucose flavonoid 3-O-glucosyltransferase 3 OS=Fragaria ananassa GN=GT3 PE=2 SV=1;; (*TAIR) AT3G21760.1 (e_value=1e-43) | Symbols: HYR1 | UDP-Glycosyltransferase superfamily protein | chr3:7667099-7668556 FORWARD LENGTH=485;; (*ITAG) Solyc07g043160.1.1 (e_value=1e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:54117285-54118607 transcript_region:SL2.40ch07:54117285..54118607+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00052146g0006.1 protein AED:0.02 eAED:0.10 QI:0|0|0|1|0|0|2|0|357; (*GB) gi|350540660|ref|NP_001234576.1| (e_value=1e-114) TCP transcription factor 10 [Solanum lycopersicum];; (*SWP) sp|Q8LPR5|TCP4_ARATH (e_value=2e-45) Transcription factor TCP4 OS=Arabidopsis thaliana GN=TCP4 PE=2 SV=1;; (*TAIR) AT3G15030.3 (e_value=1e-46) | Symbols: TCP4 | TCP family transcription factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420;; (*ITAG) Solyc07g053410.2.1 (e_value=6e-87) genomic_reference:SL2.40ch07 gene_region:59175771-59176716 transcript_region:SL2.40ch07:59175771..59176716+ functional_description:"Transcription factor CYCLOIDEA (Fragment) (AHRD V1 *-*- CYCLD_ANTML); contains Interpro domain(s) IPR005333 Transcription factor, TCP "; NbS00052146g0005.1 protein AED:0.09 eAED:0.56 QI:33|0|0|1|0|0|2|0|36 NbS00005635g0007.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|2|0|215; (*GB) gi|15232719|ref|NP_187570.1| (e_value=1e-28) putative pathogenesis-related protein [Arabidopsis thaliana];; (*SWP) sp|Q00008|PRMS_MAIZE (e_value=2e-28) Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1;; (*TAIR) AT3G09590.1 (e_value=2e-31) | Symbols: | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr3:2944953-2945513 FORWARD LENGTH=186;; (*ITAG) Solyc10g085960.1.1 (e_value=4e-91) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64288769-64289575 transcript_region:SL2.40ch10:64288769..64289575- go_terms:GO:0005576 functional_description:"Pathogenesis-related protein (AHRD V1 *--- B3TLW3_ELAGV); contains Interpro domain(s) IPR001283 Allergen V5/Tpx-1 related "; GO:0005576 NbS00005635g0011.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|0.8|0.75|0.6|5|101|250; (*GB) gi|357514399|ref|XP_003627488.1| (e_value=4e-24) hypothetical protein MTR_8g023650 [Medicago truncatula]; NbS00005635g0013.1 protein AED:0.40 eAED:0.40 QI:197|1|0.66|1|1|1|3|0|160; (*GB) gi|225439793|ref|XP_002276541.1| (e_value=6e-37) PREDICTED: uncharacterized protein LOC100249849 [Vitis vinifera];; (*TAIR) AT5G02770.1 (e_value=3e-34) | Symbols: | unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). | chr5:628101-629168 REVERSE LENGTH=214;; (*ITAG) Solyc10g085970.1.1 (e_value=2e-78) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:64291554-64294227 transcript_region:SL2.40ch10:64291554..64294227- functional_description:"Unknown Protein (AHRD V1)"; NbS00005635g0014.1 protein AED:0.63 eAED:1.00 QI:0|0|0|0.71|0.83|0.85|7|0|82 NbS00005635g0009.1 protein AED:0.01 eAED:0.01 QI:150|1|0.66|1|1|1|3|0|264; (*GB) gi|255568484|ref|XP_002525216.1| (e_value=4e-159) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9ZUT3|ALS3_ARATH (e_value=1e-148) Protein ALUMINUM SENSITIVE 3 OS=Arabidopsis thaliana GN=ALS3 PE=1 SV=1;; (*TAIR) AT2G37330.1 (e_value=7e-150) | Symbols: ALS3 | aluminum sensitive 3 | chr2:15669190-15670172 FORWARD LENGTH=273;; (*ITAG) Solyc10g085950.1.1 (e_value=1e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64285139-64288580 transcript_region:SL2.40ch10:64285139..64288580+ functional_description:"Predicted inner membrane protein (AHRD V1 ***- B7UKH4_ECO27); contains Interpro domain(s) IPR005226 Conserved hypothetical protein CHP00245 "; NbS00005635g0108.1 protein AED:0.39 eAED:0.51 QI:0|0|0.5|1|0|0.5|2|242|55 NbS00005635g0109.1 protein AED:0.49 eAED:0.53 QI:0|0|0|1|0.5|0|3|0|159 NbC26094760g0005.1 protein AED:0.05 eAED:0.05 QI:77|1|0.66|1|0.5|0.33|3|0|78; (*GB) gi|357507657|ref|XP_003624117.1| (e_value=4e-44) Sterol 3-beta-glucosyltransferase [Medicago truncatula];; (*SWP) sp|Q6C8M8|ATG26_YARLI (e_value=1e-15) Sterol 3-beta-glucosyltransferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG26 PE=3 SV=3;; (*TAIR) AT3G07020.2 (e_value=5e-43) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:2218120-2221590 REVERSE LENGTH=637;; (*ITAG) Solyc04g051150.2.1 (e_value=5e-45) genomic_reference:SL2.40ch04 gene_region:48879825-48894993 transcript_region:SL2.40ch04:48879825..48894993+ go_terms:GO:0030259 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 ***- B6U4Q7_MAIZE); contains Interpro domain(s) IPR004276 Glycosyl transferase, family 28 "; GO:0030259 NbS00006552g0005.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.2|1|1|5|0|207; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-13) hypothetical protein [Solanum lycopersicum];; (*ITAG) Solyc11g006530.1.1 (e_value=7e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1186571-1189847 transcript_region:SL2.40ch11:1186571..1189847- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00006552g0014.1 protein AED:0.12 eAED:0.12 QI:251|0.87|0.88|1|0.87|0.77|9|238|523; (*GB) gi|296090366|emb|CBI40185.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9P4X3|UTP7_SCHPO (e_value=2e-116) Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp7 PE=2 SV=1;; (*TAIR) AT3G10530.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:3286277-3288670 FORWARD LENGTH=536;; (*ITAG) Solyc05g008190.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2575652-2581304 transcript_region:SL2.40ch05:2575652..2581304- go_terms:GO:0030515,GO:0005515 functional_description:"WD repeat protein 46 (AHRD V1 **-- B0W308_CULQU); contains Interpro domain(s) IPR012952 BING4, C-terminal "; GO:0030515,GO:0005515 NbS00006552g0010.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|0|0.33|3|0|249; (*GB) gi|356600306|gb|AET22504.1| (e_value=2e-24) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=5e-16) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*TAIR) AT1G58410.1 (e_value=6e-16) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:21701286-21704255 REVERSE LENGTH=899;; (*ITAG) Solyc11g006520.1.1 (e_value=4e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1181636-1184459 transcript_region:SL2.40ch11:1181636..1184459- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00054520g0006.1 protein AED:0.16 eAED:0.20 QI:0|0.77|0.6|1|0.55|0.6|10|0|920; (*GB) gi|255555919|ref|XP_002518995.1| (e_value=0.0) GTP-binding protein alpha subunit, gna, putative [Ricinus communis];; (*SWP) sp|P93163|GPA2_SOYBN (e_value=1e-46) Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1;; (*TAIR) AT1G31930.3 (e_value=0.0) | Symbols: XLG3 | extra-large GTP-binding protein 3 | chr1:11465832-11468961 FORWARD LENGTH=848;; (*ITAG) Solyc08g076160.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57353289-57361166 transcript_region:SL2.40ch08:57353289..57361166+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00010657g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.84|1|0.83|1|13|0|885; (*GB) gi|225455571|ref|XP_002268371.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9FGR0|CPSF1_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2;; (*TAIR) AT5G51660.1 (e_value=0.0) | Symbols: CPSF160, ATCPSF160 | cleavage and polyadenylation specificity factor 160 | chr5:20980250-20989268 FORWARD LENGTH=1442;; (*ITAG) Solyc03g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1662107-1701529 transcript_region:SL2.40ch03:1662107..1701529- go_terms:GO:0005515,GO:0003730 functional_description:"Cleavage and polyadenylation specificity factor subunit A (AHRD V1 *--- C1H240_PARBA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515,GO:0003730 NbS00002583g0106.1 protein AED:0.00 eAED:0.00 QI:155|1|0.5|1|1|1|2|0|150 NbS00002583g0107.1 protein AED:0.20 eAED:0.20 QI:0|0.8|0.63|0.90|0.9|0.81|11|0|503 NbS00002583g0204.1 protein AED:0.08 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|208 NbS00002583g0203.1 protein AED:0.23 eAED:0.23 QI:0|0.66|0.5|1|1|1|4|47|113 NbS00003832g0105.1 protein AED:0.01 eAED:0.01 QI:118|0|0.5|1|0|0.5|2|301|224 NbS00003832g0120.1 protein AED:0.16 eAED:0.26 QI:0|0|0|0.5|0.66|0.5|4|0|270 NbS00003832g0116.1 protein AED:0.04 eAED:0.04 QI:22|1|1|1|1|1|4|409|424 NbS00003832g0117.1 protein AED:0.11 eAED:0.12 QI:768|1|0.75|1|1|1|4|556|900 NbS00003832g0118.1 protein AED:0.31 eAED:0.42 QI:92|0|0|0.66|0|0|3|0|195 NbS00030683g0001.1 protein AED:0.18 eAED:0.21 QI:0|0.33|0|1|1|1|4|0|226; (*GB) gi|2982451|emb|CAA18215.1| (e_value=4e-71) putative protein [Arabidopsis thaliana];; (*SWP) sp|P38166|SFT2_YEAST (e_value=3e-12) Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1;; (*TAIR) AT4G26550.1 (e_value=2e-50) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr4:13402755-13404208 REVERSE LENGTH=225;; (*ITAG) Solyc07g065850.2.1 (e_value=6e-61) genomic_reference:SL2.40ch07 gene_region:64670688-64674534 transcript_region:SL2.40ch07:64670688..64674534+ go_terms:GO:0042802 functional_description:"Transport protein SFT2 (AHRD V1 *--- C9SJZ4_VERA1); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0042802 NbS00021570g0001.1 protein AED:0.01 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|148; (*GB) gi|225428047|ref|XP_002279232.1| (e_value=4e-59) PREDICTED: SKP1-like protein 1A [Vitis vinifera];; (*SWP) sp|Q9LNT9|ASK4_ARATH (e_value=8e-57) SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=6e-58) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc03g112710.1.1 (e_value=4e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57118059-57118514 transcript_region:SL2.40ch03:57118059..57118514+ go_terms:GO:0005515 functional_description:"SKP1-like protein 1 (AHRD V1 ***- B2LUR1_MALDO); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515 NbS00017331g0012.1 protein AED:0.26 eAED:0.26 QI:42|1|1|1|0.66|0.75|4|255|298; (*GB) gi|255554981|ref|XP_002518528.1| (e_value=5e-178) Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis];; (*SWP) sp|Q8L9A9|XTH8_ARATH (e_value=2e-165) Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2;; (*TAIR) AT1G11545.1 (e_value=1e-166) | Symbols: XTH8 | xyloglucan endotransglucosylase/hydrolase 8 | chr1:3878689-3880286 REVERSE LENGTH=305;; (*ITAG) Solyc03g031800.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8562793-8564971 transcript_region:SL2.40ch03:8562793..8564971+ go_terms:GO:0016798,GO:0016762 functional_description:"Xyloglucan endotransglucosylase/hydrolase 1 (AHRD V1 **** C0IRG0_9ERIC); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798,GO:0016762 NbS00017331g0010.1 protein AED:0.02 eAED:0.02 QI:0|0.75|0.8|1|0.75|0.6|5|191|140; (*GB) gi|317159557|gb|ADV04053.1| (e_value=5e-64) eukaryotic translation initiation factor 2 [Hevea brasiliensis];; (*SWP) sp|P41568|SUI11_ARATH (e_value=6e-63) Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2;; (*TAIR) AT4G27130.1 (e_value=5e-64) | Symbols: | Translation initiation factor SUI1 family protein | chr4:13604814-13605525 REVERSE LENGTH=113;; (*ITAG) Solyc03g031810.2.1 (e_value=1e-68) genomic_reference:SL2.40ch03 gene_region:8567346-8568792 transcript_region:SL2.40ch03:8567346..8568792- go_terms:GO:0005515,GO:0003743 functional_description:"Translation initiation factor SUI1 (AHRD V1 **** Q7RQ93_PLAYO); contains Interpro domain(s) IPR005874 Eukaryotic translation initiation factor SUI1 "; GO:0005515,GO:0003743 NbS00017331g0008.1 protein AED:0.24 eAED:0.25 QI:253|1|0.93|1|1|1|16|0|658; (*GB) gi|302144065|emb|CBI23170.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9NUW8|TYDP1_HUMAN (e_value=3e-84) Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2;; (*TAIR) AT5G15170.1 (e_value=0.0) | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related | chr5:4926300-4929307 REVERSE LENGTH=605;; (*ITAG) Solyc03g031820.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8570866-8581903 transcript_region:SL2.40ch03:8570866..8581903- go_terms:GO:0017005 functional_description:"Tyrosyl-DNA phosphodiesterase 1 (AHRD V1 **** B8JJC1_MOUSE); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0017005 NbS00017331g0104.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|1|1|2|0|184 NbS00046118g0008.1 protein AED:0.17 eAED:0.17 QI:0|1|1|1|1|1|4|285|218; (*GB) gi|42565125|ref|NP_188924.3| (e_value=5e-128) emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q769F9|TMEDA_DICDI (e_value=2e-24) Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1;; (*TAIR) AT3G22845.1 (e_value=1e-130) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214;; (*ITAG) Solyc09g082770.2.1 (e_value=2e-156) genomic_reference:SL2.40ch09 gene_region:63843639-63848297 transcript_region:SL2.40ch09:63843639..63848297+ go_terms:GO:0005102,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 3 (AHRD V1 ***- B6TE63_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0005102,GO:0032403 NbS00046118g0004.1 protein AED:0.49 eAED:0.49 QI:0|0|0|0.5|1|1|4|0|180 NbS00046118g0009.1 protein AED:0.29 eAED:0.55 QI:0|0.42|0.25|1|0.42|0.37|8|95|517; (*GB) gi|113205399|gb|AAU90302.2| (e_value=7e-25) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-68) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00046118g0001.1 protein AED:0.59 eAED:0.59 QI:0|0.33|0|0.75|1|1|4|0|111 NbS00028638g0003.1 protein AED:0.05 eAED:0.06 QI:0|1|0.75|1|1|1|8|0|857; (*GB) gi|224089973|ref|XP_002308887.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P32138|YIHQ_ECOLI (e_value=7e-118) Alpha-glucosidase yihQ OS=Escherichia coli (strain K12) GN=yihQ PE=3 SV=3;; (*TAIR) AT3G45940.1 (e_value=9e-19) | Symbols: | Glycosyl hydrolases family 31 protein | chr3:16886226-16889171 REVERSE LENGTH=868;; (*ITAG) Solyc03g094020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:49190143-49194056 transcript_region:SL2.40ch03:49190143..49194056- go_terms:GO:0005975 functional_description:"Alpha-glucosidase-like (AHRD V1 ***- Q5NBJ1_ORYSJ); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0005975 NbS00020313g0009.1 protein AED:0.13 eAED:0.14 QI:0|0.83|0.57|1|1|0.85|7|6|345; (*GB) gi|225441842|ref|XP_002284093.1| (e_value=8e-133) PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710-like [Vitis vinifera];; (*SWP) sp|Q8GWK2|AP2L4_ARATH (e_value=1e-89) AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2;; (*TAIR) AT2G41710.1 (e_value=3e-93) | Symbols: | Integrase-type DNA-binding superfamily protein | chr2:17400274-17402903 REVERSE LENGTH=423;; (*ITAG) Solyc02g030210.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:16023195-16026741 transcript_region:SL2.40ch02:16023195..16026741+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At2g41710 (AHRD V1 ***- AP2L4_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00017564g0002.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|79 NbS00022203g0005.1 protein AED:0.03 eAED:0.03 QI:507|1|1|1|0|0.25|4|2517|88 NbS00022203g0008.1 protein AED:0.06 eAED:0.06 QI:52|1|0.33|1|0.5|0.33|3|7|56; (*GB) gi|298204540|emb|CBI23815.3| (e_value=2e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g104140.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:84370683-84378111 transcript_region:SL2.40ch01:84370683..84378111+ go_terms:GO:0005515 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7KLK6_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0005515 NbS00014254g0021.1 protein AED:0.05 eAED:0.05 QI:0|0.5|0|1|0.5|0.57|7|0|529; (*GB) gi|47457588|emb|CAG29169.1| (e_value=1e-110) Rme-8 homologue [Nicotiana tabacum];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=2e-23) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=1e-86) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=1e-120) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00014254g0016.1 protein AED:0.10 eAED:0.10 QI:45|1|0|1|1|1|2|0|149; (*GB) gi|225445342|ref|XP_002281542.1| (e_value=8e-80) PREDICTED: dnaJ homolog subfamily C member 13-like [Vitis vinifera];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=2e-17) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=3e-68) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=2e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00014254g0004.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|827; (*GB) gi|147819178|emb|CAN71462.1| (e_value=0.0) hypothetical protein VITISV_018656 [Vitis vinifera];; (*SWP) sp|Q9LYV3|PP377_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1;; (*TAIR) AT5G13230.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4222514-4224982 FORWARD LENGTH=822;; (*ITAG) Solyc05g023900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:30032499-30034988 transcript_region:SL2.40ch05:30032499..30034988+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M582_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00014254g0022.1 protein AED:0.12 eAED:0.12 QI:73|1|0.33|1|1|0.66|3|0|108; (*GB) gi|147855497|emb|CAN83857.1| (e_value=2e-51) hypothetical protein VITISV_014674 [Vitis vinifera];; (*TAIR) AT2G26890.1 (e_value=6e-43) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021920.2.1 (e_value=2e-70) genomic_reference:SL2.40ch08 gene_region:10229037-10234054 transcript_region:SL2.40ch08:10229037..10234054+ functional_description:"DnaJ homolog subfamily C member 13 (AHRD V1 **-- DJC13_HUMAN)"; NbS00014254g0019.1 protein AED:0.21 eAED:0.22 QI:0|1|0|1|1|1|2|1563|409; (*GB) gi|255543541|ref|XP_002512833.1| (e_value=3e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G13310.1 (e_value=2e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4263561-4264989 FORWARD LENGTH=370;; (*ITAG) Solyc04g024520.2.1 (e_value=2e-166) genomic_reference:SL2.40ch04 gene_region:13142206-13146433 transcript_region:SL2.40ch04:13142206..13146433+ functional_description:"AT5g13970/MAC12_6 (AHRD V1 ***- Q9FFX8_ARATH)"; NbS00033671g0017.1 protein AED:0.05 eAED:0.06 QI:0|0.77|0.73|1|0.83|0.84|19|215|1082; (*GB) gi|224056978|ref|XP_002299105.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=7e-122) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=0.0) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00033671g0004.1 protein AED:0.07 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|219; (*GB) gi|224075978|ref|XP_002304856.1| (e_value=7e-39) AP2/ERF domain-containing transcription factor [Populus trichocarpa];; (*SWP) sp|Q6J9S1|RA211_ARATH (e_value=1e-11) Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1;; (*TAIR) AT5G19790.1 (e_value=7e-13) | Symbols: RAP2.11 | related to AP2 11 | chr5:6689271-6690032 REVERSE LENGTH=253;; (*ITAG) Solyc01g005630.1.1 (e_value=1e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:444880-445584 transcript_region:SL2.40ch01:444880..445584+ go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene responsive transcription factor 2a (AHRD V1 *-*- C0J9I7_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00033671g0019.1 protein AED:0.39 eAED:0.41 QI:0|0.66|0.75|1|0.33|0.25|4|294|191; (*GB) gi|255583670|ref|XP_002532589.1| (e_value=2e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G10250.2 (e_value=4e-34) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc01g005640.2.1 (e_value=1e-84) genomic_reference:SL2.40ch01 gene_region:446769-454457 transcript_region:SL2.40ch01:446769..454457+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00033671g0018.1 protein AED:0.41 eAED:0.57 QI:200|0.66|0.5|1|0|0.5|4|0|183; (*GB) gi|6056200|gb|AAF02817.1|AC009400_13 (e_value=6e-35) unknown protein [Arabidopsis thaliana];; (*TAIR) AT3G10250.2 (e_value=8e-37) | Symbols: | Plant protein 1589 of unknown function | chr3:3168371-3170418 REVERSE LENGTH=324;; (*ITAG) Solyc01g005640.2.1 (e_value=6e-59) genomic_reference:SL2.40ch01 gene_region:446769-454457 transcript_region:SL2.40ch01:446769..454457+ functional_description:"Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *-*- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant "; NbS00005843g0003.1 protein AED:0.19 eAED:0.19 QI:162|0.6|0.66|1|0.4|0.66|6|220|150; (*GB) gi|225445565|ref|XP_002285328.1| (e_value=8e-35) PREDICTED: axial regulator YABBY 5 [Vitis vinifera];; (*SWP) sp|Q8GW46|YAB5_ARATH (e_value=2e-26) Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1;; (*TAIR) AT2G26580.2 (e_value=1e-27) | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164;; (*ITAG) Solyc12g009580.1.1 (e_value=3e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2837633-2843798 transcript_region:SL2.40ch12:2837633..2843798- go_terms:GO:0005515,GO:0003700 functional_description:"CRABS CLAW (Fragment) (AHRD V1 **-- Q5EMM7_GOSHI); contains Interpro domain(s) IPR006780 YABBY protein "; GO:0005515,GO:0003700 NbS00006658g0002.1 protein AED:0.02 eAED:0.03 QI:68|1|0.5|1|0|0.5|2|0|295; (*GB) gi|147816954|emb|CAN71058.1| (e_value=2e-17) hypothetical protein VITISV_030011 [Vitis vinifera];; (*TAIR) AT1G06530.1 (e_value=3e-14) | Symbols: | Tropomyosin-related | chr1:2001625-2002596 FORWARD LENGTH=323;; (*ITAG) Solyc07g056370.2.1 (e_value=6e-131) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00006658g0001.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|105; (*GB) gi|224085310|ref|XP_002307542.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT2G42870.1 (e_value=9e-22) | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | chr2:17836831-17837187 REVERSE LENGTH=118;; (*ITAG) Solyc07g056360.1.1 (e_value=5e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61560598-61560912 transcript_region:SL2.40ch07:61560598..61560912+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013723g0013.1 protein AED:0.06 eAED:0.07 QI:0|1|0|1|1|1|2|0|1017; (*GB) gi|225458603|ref|XP_002282770.1| (e_value=0.0) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|O48724|WEB1_ARATH (e_value=0.0) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=0.0) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc07g022910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23226837-23229990 transcript_region:SL2.40ch07:23226837..23229990- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00013723g0014.1 protein AED:0.06 eAED:0.09 QI:0|0|0|1|1|1|2|0|633; (*GB) gi|350537733|ref|NP_001234563.1| (e_value=0.0) dem protein [Solanum lycopersicum];; (*SWP) sp|P40781|CYPR4_CYNCA (e_value=0.0) Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1;; (*TAIR) AT4G33400.1 (e_value=0.0) | Symbols: | Vacuolar import/degradation, Vid27-related protein | chr4:16078189-16080410 REVERSE LENGTH=645;; (*ITAG) Solyc04g078940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61183300-61186630 transcript_region:SL2.40ch04:61183300..61186630+ functional_description:"Vacuolar import and degradation protein VID27 (AHRD V1 *--- B3LP56_YEAS1); contains Interpro domain(s) IPR013863 Vacuolar import and degradation, Vid27-related "; NbS00013723g0020.1 protein AED:0.20 eAED:0.21 QI:0|0.28|0.25|1|0.28|0.12|8|0|740; (*GB) gi|458456|gb|AAA16513.1| (e_value=0.0) alpha amylase precursor, partial [Cuscuta reflexa];; (*SWP) sp|P17859|AMYA_VIGMU (e_value=0.0) Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1;; (*TAIR) AT4G25000.1 (e_value=9e-163) | Symbols: ATAMY1, AMY1 | alpha-amylase-like | chr4:12852109-12853825 REVERSE LENGTH=423;; (*ITAG) Solyc03g095710.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50338173-50341110 transcript_region:SL2.40ch03:50338173..50341110- go_terms:GO:0004556 functional_description:"Alpha-amylase (AHRD V1 **** Q8LP27_IPONI); contains Interpro domain(s) IPR013775 Alpha-amylase, plant "; GO:0004556 NbS00059082g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|84; (*GB) gi|350535244|ref|NP_001234440.1| (e_value=1e-41) gamma-glutamylhydrolase 2 [Solanum lycopersicum];; (*SWP) sp|O65355|GGH_ARATH (e_value=1e-28) Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2;; (*TAIR) AT1G78660.2 (e_value=2e-30) | Symbols: ATGGH1, GGH1 | gamma-glutamyl hydrolase 1 | chr1:29586014-29588117 FORWARD LENGTH=347;; (*ITAG) Solyc10g007410.2.1 (e_value=3e-44) genomic_reference:SL2.40ch10 gene_region:1772964-1779740 transcript_region:SL2.40ch10:1772964..1779740- go_terms:GO:0034722 functional_description:"Gamma-glutamyl hydrolase 2 (AHRD V1 **** D7MX15_ARALY); contains Interpro domain(s) IPR015527 Peptidase C26, gamma-glutamyl hydrolase "; GO:0034722 NbS00059690g0011.1 protein AED:0.09 eAED:0.09 QI:413|1|1|1|0.92|0.92|14|408|450; (*GB) gi|6328415|dbj|BAA86386.1| (e_value=0.0) transcription factor [Nicotiana tabacum];; (*SWP) sp|Q9FV71|E2FB_ARATH (e_value=5e-151) Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1;; (*TAIR) AT5G22220.2 (e_value=4e-152) | Symbols: E2F1, E2FB, ATE2FB | E2F transcription factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469;; (*ITAG) Solyc11g068800.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50504117-50508808 transcript_region:SL2.40ch11:50504117..50508808- go_terms:GO:0005667 functional_description:"Transcription factor (E2F) (AHRD V1 ***- Q9FNS0_CHERU); contains Interpro domain(s) IPR015633 E2F Family "; GO:0005667 NbS00059690g0003.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|184; (*GB) gi|224102859|ref|XP_002312831.1| (e_value=4e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G52525.1 (e_value=1e-23) | Symbols: ATOFP6, OFP6 | ovate family protein 6 | chr3:19475159-19475638 FORWARD LENGTH=159;; (*ITAG) Solyc11g068780.1.1 (e_value=6e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:50496070-50496483 transcript_region:SL2.40ch11:50496070..50496483- functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6SZV1_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00059690g0007.1 protein AED:0.19 eAED:0.21 QI:0|0.33|0|0.75|1|1|4|0|185; (*GB) gi|363807412|ref|NP_001242383.1| (e_value=2e-59) uncharacterized protein LOC100820351 [Glycine max];; (*TAIR) AT2G27290.1 (e_value=7e-53) | Symbols: | Protein of unknown function (DUF1279) | chr2:11678586-11679765 REVERSE LENGTH=201;; (*ITAG) Solyc11g068790.1.1 (e_value=6e-70) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50501283-50503285 transcript_region:SL2.40ch11:50501283..50503285+ functional_description:"Chromosome 20 open reading frame 108 ortholog (AHRD V1 *--- A1A4K7_BOVIN); contains Interpro domain(s) IPR009688 Protein of unknown function DUF1279 "; NbS00014945g0005.1 protein AED:0.28 eAED:0.28 QI:0|0.8|0.33|1|0.8|0.83|6|0|226; (*GB) gi|57012986|sp|Q9AWA5.2|GWD1_SOLTU (e_value=1e-132) RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related R1 protein; Flags: Precursor;; (*SWP) sp|Q9AWA5|GWD1_SOLTU (e_value=4e-134) Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2;; (*TAIR) AT1G10760.1 (e_value=1e-48) | Symbols: SEX1, SOP1, SOP, GWD1, GWD | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | chr1:3581210-3590043 REVERSE LENGTH=1399;; (*ITAG) Solyc05g005020.2.1 (e_value=4e-130) genomic_reference:SL2.40ch05 gene_region:32534-50826 transcript_region:SL2.40ch05:32534..50826- go_terms:GO:0050521,GO:0005515 functional_description:"R1 protein alpha-glucan water dikinase (AHRD V1 **** A8I6T5_CHLRE); contains Interpro domain(s) IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding "; GO:0050521,GO:0005515 NbS00054134g0012.1 protein AED:0.04 eAED:0.04 QI:399|1|1|1|0|0|3|1236|797; (*GB) gi|359489486|ref|XP_002269573.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Vitis vinifera];; (*SWP) sp|Q9ZUW3|PP172_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1;; (*TAIR) AT3G61170.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=783;; (*ITAG) Solyc01g091610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00054134g0011.1 protein AED:0.22 eAED:0.22 QI:0|1|0.84|1|0.83|0.92|13|44|585; (*GB) gi|1617200|emb|CAA69899.1| (e_value=0.0) NSK6 [Nicotiana tabacum];; (*SWP) sp|Q96287|KSG8_ARATH (e_value=0.0) Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3;; (*TAIR) AT4G00720.1 (e_value=0.0) | Symbols: ATSK32, ASKTHETA, SK32 | shaggy-like protein kinase 32 | chr4:294116-297002 REVERSE LENGTH=472;; (*ITAG) Solyc01g091620.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76958019-76962224 transcript_region:SL2.40ch01:76958019..76962224- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00040012g0006.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|0.5|1|3|0|220; (*GB) gi|33329192|gb|AAQ09996.1| (e_value=9e-113) S3 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata];; (*TAIR) AT1G60995.1 (e_value=2e-48) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Membralin (InterPro:IPR019144); Has 172 Blast hits to 170 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | chr1:22465768-22470575 REVERSE LENGTH=623;; (*ITAG) Solyc04g026270.2.1 (e_value=3e-125) genomic_reference:SL2.40ch04 gene_region:25880184-25889485 transcript_region:SL2.40ch04:25880184..25889485+ functional_description:"S2 self-incompatibility locus-linked pollen 3.15 protein (Fragment) (AHRD V1 ***- Q7XAE4_PETIN)"; NbS00040012g0009.1 protein AED:0.30 eAED:0.30 QI:280|0.83|0.85|1|0.83|0.71|7|267|110; (*GB) gi|6358511|gb|AAF07222.1|AF072520_1 (e_value=3e-69) centrin [Nicotiana tabacum];; (*SWP) sp|O82659|CML20_ARATH (e_value=6e-53) Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1;; (*TAIR) AT3G50360.1 (e_value=5e-54) | Symbols: ATCEN2, CEN1, CEN2 | centrin2 | chr3:18674421-18675502 FORWARD LENGTH=169;; (*ITAG) Solyc04g026350.2.1 (e_value=6e-67) genomic_reference:SL2.40ch04 gene_region:26595840-26604419 transcript_region:SL2.40ch04:26595840..26604419+ go_terms:GO:0031683 functional_description:"Calmodulin (AHRD V1 ***- B0WM51_CULQU); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0031683 NbS00016217g0017.1 protein AED:0.00 eAED:0.00 QI:80|1|1|1|1|1|2|694|119; (*ITAG) Solyc10g045320.1.1 (e_value=1e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:28165195-28166785 transcript_region:SL2.40ch10:28165195..28166785+ functional_description:"Citrate synthase (AHRD V1 ***- A5AGI7_VITVI)"; NbS00016217g0016.1 protein AED:0.03 eAED:0.03 QI:44|0.5|0.14|1|0.16|0.14|7|0|1926; (*GB) gi|359477550|ref|XP_003631994.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera];; (*TAIR) AT3G22790.1 (e_value=0.0) | Symbols: | Kinase interacting (KIP1-like) family protein | chr3:8052446-8057888 REVERSE LENGTH=1728;; (*ITAG) Solyc10g045290.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28102747-28111191 transcript_region:SL2.40ch10:28102747..28111191+ functional_description:"Kinase interacting family protein (AHRD V1 **-- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00009873g0001.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|494; (*GB) gi|225431575|ref|XP_002276350.1| (e_value=5e-152) PREDICTED: nodulation-signaling pathway 2 protein-like [Vitis vinifera];; (*SWP) sp|Q5NE24|NSP2_MEDTR (e_value=6e-62) Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1;; (*TAIR) AT4G08250.1 (e_value=3e-44) | Symbols: | GRAS family transcription factor | chr4:5196787-5198238 FORWARD LENGTH=483;; (*ITAG) Solyc11g005610.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:474688-476166 transcript_region:SL2.40ch11:474688..476166+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B1Q3B1_BRACM); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00009873g0003.1 protein AED:0.06 eAED:0.06 QI:6|-1|0|1|-1|1|1|0|80; (*ITAG) Solyc08g048080.1.1 (e_value=2e-46) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:37782633-37782920 transcript_region:SL2.40ch08:37782633..37782920- functional_description:"Unknown Protein (AHRD V1)"; NbS00009873g0002.1 protein AED:0.27 eAED:0.27 QI:318|0|0.5|1|0|0.5|2|0|347; (*GB) gi|225429874|ref|XP_002283505.1| (e_value=4e-168) PREDICTED: acetylglutamate kinase, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SCL7|NAGK_ARATH (e_value=6e-147) Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana GN=NAGK PE=1 SV=1;; (*TAIR) AT3G57560.1 (e_value=5e-148) | Symbols: NAGK | N-acetyl-l-glutamate kinase | chr3:21311164-21312207 REVERSE LENGTH=347;; (*ITAG) Solyc11g005620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:480207-481250 transcript_region:SL2.40ch11:480207..481250+ go_terms:GO:0008652,GO:0006561,GO:0005737 functional_description:"Acetylglutamate kinase-like protein (AHRD V1 ***- Q949B4_ORYSA); contains Interpro domain(s) IPR011148 N-acetylglutamate kinase "; GO:0008652,GO:0006561,GO:0005737 NbS00043469g0004.1 protein AED:0.72 eAED:0.72 QI:0|0|0|0.2|1|1|5|0|243; (*ITAG) Solyc10g047840.1.1 (e_value=2e-12) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00007584g0004.1 protein AED:0.15 eAED:0.19 QI:5|0.28|0.12|0.87|0.71|0.5|8|0|420; (*GB) gi|225428247|ref|XP_002282214.1| (e_value=0.0) PREDICTED: L-ascorbate oxidase homolog [Vitis vinifera];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=5e-85) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=2e-138) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc01g111970.2.1 (e_value=7e-180) genomic_reference:SL2.40ch01 gene_region:89869360-89872814 transcript_region:SL2.40ch01:89869360..89872814- go_terms:GO:0055114 functional_description:"Laccase 1a (AHRD V1 **-- B9IG56_POPTR); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00032411g0001.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|75; (*GB) gi|223972407|dbj|BAH23183.1| (e_value=4e-25) D1 protein [uncultured organism];; (*SWP) sp|P04998|PSBA_MEDSA (e_value=3e-25) Photosystem Q(B) protein OS=Medicago sativa GN=psbA PE=3 SV=1;; (*ITAG) ATCG00020.1 (e_value=2e-26) | Symbols: PSBA | photosystem II reaction center protein A | chrC:383-1444 REVERSE LENGTH=353;; (*ITAG) Solyc11g056340.1.1 (e_value=5e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43107779-43107970 transcript_region:SL2.40ch11:43107779..43107970- go_terms:GO:0030077 functional_description:"Photosystem Q(B) protein (AHRD V1 ***- Q7YL63_ACTDE); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00012054g0003.1 protein AED:0.02 eAED:0.07 QI:0|1|0|1|1|1|2|0|304; (*GB) gi|350539451|ref|NP_001234394.1| (e_value=9e-176) phosphoenolpyruvate carboxylase kinase [Solanum lycopersicum];; (*SWP) sp|Q9SPK4|PPCK1_ARATH (e_value=1e-101) Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1;; (*TAIR) AT1G08650.1 (e_value=7e-103) | Symbols: PPCK1, ATPPCK1 | phosphoenolpyruvate carboxylase kinase 1 | chr1:2752206-2753232 FORWARD LENGTH=284;; (*ITAG) Solyc04g009900.2.1 (e_value=2e-178) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00022674g0004.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0.5|2|187|951; (*GB) gi|225429912|ref|XP_002281133.1| (e_value=0.0) PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 [Vitis vinifera];; (*SWP) sp|O82318|Y2579_ARATH (e_value=0.0) Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1;; (*TAIR) AT2G25790.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr2:11000631-11004031 FORWARD LENGTH=960;; (*ITAG) Solyc08g066490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52383161-52387655 transcript_region:SL2.40ch08:52383161..52387655+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00025692g0006.1 protein AED:0.17 eAED:0.17 QI:442|0.75|1|1|1|1|5|400|93; (*GB) gi|224125482|ref|XP_002329816.1| (e_value=9e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20740.2 (e_value=9e-17) | Symbols: | Tetraspanin family protein | chr2:8935911-8937292 FORWARD LENGTH=180;; (*ITAG) Solyc02g078450.2.1 (e_value=9e-32) genomic_reference:SL2.40ch02 gene_region:37698010-37699695 transcript_region:SL2.40ch02:37698010..37699695+ go_terms:GO:0016021 functional_description:"Tetraspanin family protein (AHRD V1 ***- B6TTZ1_MAIZE); contains Interpro domain(s) IPR000301 Tetraspanin, subgroup "; GO:0016021 NbS00025692g0007.1 protein AED:0.24 eAED:0.24 QI:264|0.85|0.8|1|0.5|0.66|15|572|457; (*GB) gi|147854406|emb|CAN81292.1| (e_value=0.0) hypothetical protein VITISV_005315 [Vitis vinifera];; (*SWP) sp|P60027|TF2H4_PANTR (e_value=3e-80) General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1;; (*TAIR) AT4G17020.1 (e_value=0.0) | Symbols: | transcription factor-related | chr4:9578152-9581082 REVERSE LENGTH=452;; (*ITAG) Solyc02g078440.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37690942-37697639 transcript_region:SL2.40ch02:37690942..37697639+ go_terms:GO:0016251 functional_description:"RNA polymerase II transcription factor B subunit 2 (AHRD V1 **** B2WEG4_PYRTR); contains Interpro domain(s) IPR004598 Transcription factor Tfb2 "; GO:0016251 NbS00022284g0015.1 protein AED:0.00 eAED:0.00 QI:75|0.83|0.85|1|0.83|0.85|7|550|347; (*GB) gi|255560015|ref|XP_002521026.1| (e_value=3e-137) AP-1 complex subunit gamma-2, putative [Ricinus communis];; (*SWP) sp|Q84K16|AP1G1_ARATH (e_value=4e-114) AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR PE=1 SV=1;; (*TAIR) AT1G23900.2 (e_value=3e-115) | Symbols: GAMMA-ADAPTIN 1 | gamma-adaptin 1 | chr1:8441379-8447152 FORWARD LENGTH=876;; (*ITAG) Solyc04g025870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22707259-22748403 transcript_region:SL2.40ch04:22707259..22748403- go_terms:GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0030276 NbS00022284g0016.1 protein AED:0.07 eAED:0.07 QI:4|0.9|0.72|0.90|0.7|0.81|11|0|507; (*GB) gi|343172230|gb|AEL98819.1| (e_value=0.0) AP-1 complex subunit gamma-1, partial [Silene latifolia];; (*SWP) sp|Q9ZUI6|AP1G2_ARATH (e_value=0.0) AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=2 SV=2;; (*TAIR) AT1G60070.1 (e_value=0.0) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc04g025870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:22707259-22748403 transcript_region:SL2.40ch04:22707259..22748403- go_terms:GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0030276 NbS00031948g0008.1 protein AED:0.10 eAED:0.11 QI:0|0.33|0.25|1|0.66|0.5|4|0|311; (*GB) gi|255567031|ref|XP_002524498.1| (e_value=1e-97) xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis];; (*SWP) sp|O48781|SPX2_ARATH (e_value=1e-80) SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1;; (*TAIR) AT2G26660.1 (e_value=8e-82) | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:11338932-11340703 FORWARD LENGTH=287;; (*ITAG) Solyc12g009480.1.1 (e_value=4e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2734835-2737711 transcript_region:SL2.40ch12:2734835..2737711- functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00031948g0007.1 protein AED:0.23 eAED:0.23 QI:0|1|0.75|1|1|1|4|0|278; (*GB) gi|337271830|gb|AEI69673.1| (e_value=0.0) heme oxygenase 1 [Nicotiana tabacum];; (*SWP) sp|O48782|HMOX1_ARATH (e_value=1e-137) Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana GN=HO1 PE=1 SV=2;; (*TAIR) AT2G26670.1 (e_value=1e-138) | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant haem oxygenase (decyclizing) family protein | chr2:11341816-11343394 FORWARD LENGTH=282;; (*ITAG) Solyc12g009470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2726504-2729459 transcript_region:SL2.40ch12:2726504..2729459- go_terms:GO:0004392 functional_description:"Heme oxygenase 1 (AHRD V1 **** Q94FW7_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant "; GO:0004392 NbS00036063g0001.1 protein AED:0.00 eAED:0.00 QI:529|0|0.5|1|0|0.5|2|175|188; (*GB) gi|350536135|ref|NP_001233975.1| (e_value=6e-58) transcription factor [Solanum lycopersicum];; (*SWP) sp|P81393|MYB08_ANTMA (e_value=1e-44) Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1;; (*TAIR) AT4G38620.1 (e_value=1e-34) | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282;; (*ITAG) Solyc10g055410.1.1 (e_value=1e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:52192550-52193521 transcript_region:SL2.40ch10:52192550..52193521- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- B9H191_POPTR); contains Interpro domain(s) IPR017930 Myb-type HTH DNA-binding domain "; GO:0003677,GO:0045449 NbS00036063g0004.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.33|1|1|3|0|228; (*GB) gi|111073733|dbj|BAF02555.1| (e_value=3e-80) hypothetical protein [Nicotiana benthamiana];; (*TAIR) AT1G65870.1 (e_value=8e-59) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr1:24503624-24504193 FORWARD LENGTH=189;; (*ITAG) Solyc10g055190.1.1 (e_value=6e-105) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51917042-51917611 transcript_region:SL2.40ch10:51917042..51917611+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YQZ7_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00056766g0003.1 protein AED:0.46 eAED:0.46 QI:0|0.4|0.5|1|0.6|0.5|6|0|198; (*GB) gi|351723663|ref|NP_001236519.1| (e_value=7e-90) uncharacterized protein LOC100306544 [Glycine max];; (*SWP) sp|Q5M823|NUDC2_RAT (e_value=1e-15) NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1;; (*TAIR) AT5G58740.1 (e_value=2e-90) | Symbols: | HSP20-like chaperones superfamily protein | chr5:23725936-23727528 REVERSE LENGTH=158;; (*ITAG) Solyc06g076940.2.1 (e_value=1e-101) genomic_reference:SL2.40ch06 gene_region:44208852-44212836 transcript_region:SL2.40ch06:44208852..44212836+ functional_description:"NudC domain-containing protein 2 (AHRD V1 ***- B6T1R3_MAIZE); contains Interpro domain(s) IPR017447 CS "; NbS00006323g0003.1 protein AED:0.28 eAED:0.51 QI:0|0|0|0.5|0|0|2|0|110 NbS00039249g0009.1 protein AED:0.16 eAED:0.18 QI:0|0.66|0.57|1|0.16|0.42|7|0|633; (*GB) gi|224120010|ref|XP_002331115.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93VV5|PTR16_ARATH (e_value=0.0) Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1;; (*TAIR) AT1G59740.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:21968227-21972312 FORWARD LENGTH=591;; (*ITAG) Solyc01g103030.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83457925-83462557 transcript_region:SL2.40ch01:83457925..83462557- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q7XAK5_PRUPE); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00039249g0010.1 protein AED:0.29 eAED:0.29 QI:0|1|0.33|1|1|1|3|0|159; (*GB) gi|217074004|gb|ACJ85362.1| (e_value=2e-87) unknown [Medicago truncatula];; (*TAIR) AT2G02570.4 (e_value=1e-83) | Symbols: | nucleic acid binding;RNA binding | chr2:698361-700794 REVERSE LENGTH=300;; (*ITAG) Solyc01g103020.2.1 (e_value=2e-104) genomic_reference:SL2.40ch01 gene_region:83450122-83456095 transcript_region:SL2.40ch01:83450122..83456095+ go_terms:GO:0005515 functional_description:"Survival of motor neuron-related-splicing factor 30 (AHRD V1 ***- C1BW46_ESOLU); contains Interpro domain(s) IPR018351 Tudor subgroup "; GO:0005515 NbS00004559g0007.1 protein AED:0.15 eAED:0.15 QI:137|1|0.86|1|1|1|15|0|819; (*GB) gi|225424572|ref|XP_002282097.1| (e_value=0.0) PREDICTED: protein SDA1 homolog [Vitis vinifera];; (*SWP) sp|Q7KKH3|SDA1_DROME (e_value=6e-97) Protein SDA1 homolog OS=Drosophila melanogaster GN=Mys45A PE=1 SV=1;; (*TAIR) AT1G13160.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr1:4484634-4488388 FORWARD LENGTH=804;; (*ITAG) Solyc12g099890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65178512-65183874 transcript_region:SL2.40ch12:65178512..65183874- functional_description:"SDA1 family protein (AHRD V1 ***- D7KQC5_ARALY); contains Interpro domain(s) IPR007949 SDA1 "; NbS00004559g0010.1 protein AED:0.20 eAED:0.20 QI:193|1|1|1|0.6|0.33|6|523|183; (*GB) gi|335389847|gb|AEH57631.1| (e_value=4e-98) nucleoside diphosphate kinase [Solanum tuberosum];; (*SWP) sp|Q65UT5|NDK_MANSM (e_value=6e-36) Nucleoside diphosphate kinase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ndk PE=3 SV=1;; (*TAIR) AT1G17410.1 (e_value=2e-71) | Symbols: | Nucleoside diphosphate kinase family protein | chr1:5968627-5969780 REVERSE LENGTH=181;; (*ITAG) Solyc12g049370.1.1 (e_value=9e-111) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:46357605-46362081 transcript_region:SL2.40ch12:46357605..46362081+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- C6T1U7_SOYBN); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00010548g0010.1 protein AED:0.04 eAED:0.04 QI:0|1|1|1|1|1|18|242|1327; (*GB) gi|147794989|emb|CAN67425.1| (e_value=0.0) hypothetical protein VITISV_006652 [Vitis vinifera];; (*SWP) sp|Q4QY64|ATAD5_MOUSE (e_value=8e-31) ATPase family AAA domain-containing protein 5 OS=Mus musculus GN=Atad5 PE=1 SV=1;; (*TAIR) AT1G77620.1 (e_value=3e-118) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:29167934-29172867 REVERSE LENGTH=1151;; (*ITAG) Solyc06g060350.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:34715765-34732079 transcript_region:SL2.40ch06:34715765..34732079+ go_terms:GO:0005634,GO:0017111 functional_description:"Replication factor C subunit 1 (AHRD V1 *--- C5FPB4_NANOT); contains Interpro domain(s) IPR004582 Checkpoint protein Rad24 "; GO:0005634,GO:0017111 NbS00010548g0011.1 protein AED:0.30 eAED:0.30 QI:82|1|1|1|1|1|3|187|215; (*GB) gi|147794988|emb|CAN67424.1| (e_value=1e-76) hypothetical protein VITISV_006651 [Vitis vinifera];; (*TAIR) AT1G44760.1 (e_value=7e-75) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:16896894-16898427 REVERSE LENGTH=213;; (*ITAG) Solyc06g060360.2.1 (e_value=2e-85) genomic_reference:SL2.40ch06 gene_region:34746490-34748240 transcript_region:SL2.40ch06:34746490..34748240+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- A8IXG1_BRACM); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00010548g0012.1 protein AED:0.27 eAED:0.27 QI:240|0.5|0.4|1|0|0.2|5|0|297; (*GB) gi|225459544|ref|XP_002285850.1| (e_value=1e-147) PREDICTED: UDP-galactose transporter 1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C521|UGAL1_ARATH (e_value=2e-147) UDP-galactose transporter 1 OS=Arabidopsis thaliana GN=UDP-GALT1 PE=2 SV=1;; (*TAIR) AT1G77610.1 (e_value=2e-148) | Symbols: | EamA-like transporter family protein | chr1:29165489-29167486 FORWARD LENGTH=336;; (*ITAG) Solyc06g060370.2.1 (e_value=2e-170) genomic_reference:SL2.40ch06 gene_region:34748707-34755278 transcript_region:SL2.40ch06:34748707..34755278- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B4G1R1_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00042505g0007.1 protein AED:0.25 eAED:0.27 QI:0|0.71|0.72|1|0.76|0.81|22|257|931; (*GB) gi|225457017|ref|XP_002279079.1| (e_value=0.0) PREDICTED: pantothenate kinase 2-like [Vitis vinifera];; (*SWP) sp|Q8L5Y9|PANK2_ARATH (e_value=0.0) Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2;; (*TAIR) AT4G32180.1 (e_value=0.0) | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 | chr4:15537724-15543715 REVERSE LENGTH=901;; (*ITAG) Solyc03g112910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57242394-57257123 transcript_region:SL2.40ch03:57242394..57257123+ go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 *-** C1FDA4_9CHLO); contains Interpro domain(s) IPR015844 Pantothenate kinase, acetyl-CoA regulated, two-domain type "; GO:0005515,GO:0004594 NbS00042505g0002.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|225456329|ref|XP_002283829.1| (e_value=2e-51) PREDICTED: uncharacterized protein LOC100242196 [Vitis vinifera];; (*TAIR) AT3G48550.1 (e_value=5e-34) | Symbols: | BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17994048-17994595 FORWARD LENGTH=158;; (*ITAG) Solyc03g112920.1.1 (e_value=2e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57260422-57260952 transcript_region:SL2.40ch03:57260422..57260952- functional_description:"C2H2L domain class transcription factor (AHRD V1 ***- D9ZIU3_MALDO)"; NbS00014832g0006.1 protein AED:0.09 eAED:0.16 QI:42|0.33|0.14|1|0.33|0.28|7|0|411; (*GB) gi|186462503|gb|ACC78614.1| (e_value=0.0) ethylene receptor [Nicotiana tabacum];; (*SWP) sp|O48929|ETR1_TOBAC (e_value=0.0) Ethylene receptor OS=Nicotiana tabacum GN=ETR1 PE=2 SV=1;; (*TAIR) AT1G66340.1 (e_value=2e-172) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=0.0) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00034460g0007.1 protein AED:0.05 eAED:0.05 QI:0|0|0|0.5|1|1|2|0|336; (*GB) gi|24371053|dbj|BAC22124.1| (e_value=0.0) t-complex polypeptide 1 [Bruguiera sexangula];; (*SWP) sp|P28769|TCPA_ARATH (e_value=0.0) T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1;; (*TAIR) AT3G20050.1 (e_value=0.0) | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha subunit | chr3:6998544-7002266 REVERSE LENGTH=545;; (*ITAG) Solyc01g090750.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76162903-76172451 transcript_region:SL2.40ch01:76162903..76172451+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit alpha (AHRD V1 ***- B9SF60_RICCO); contains Interpro domain(s) IPR012715 T-complex protein 1, alpha subunit "; GO:0051082 NbS00034460g0009.1 protein AED:0.11 eAED:0.11 QI:0|1|0.83|1|1|1|6|0|273; (*GB) gi|225441010|ref|XP_002277490.1| (e_value=1e-89) PREDICTED: uncharacterized protein LOC100264874 [Vitis vinifera];; (*TAIR) AT4G26190.1 (e_value=1e-55) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:13262473-13266282 REVERSE LENGTH=1057;; (*ITAG) Solyc09g008950.1.1 (e_value=2e-161) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2337920-2340062 transcript_region:SL2.40ch09:2337920..2340062- functional_description:"Homology to unknown gene (AHRD V1 ***- Q01A04_OSTTA); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00034460g0010.1 protein AED:0.17 eAED:0.17 QI:0|0.33|0.25|1|0.33|0.25|4|286|395; (*GB) gi|297740052|emb|CBI30234.3| (e_value=4e-61) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G12080.1 (e_value=1e-30) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc09g008940.2.1 (e_value=1e-111) genomic_reference:SL2.40ch09 gene_region:2333443-2337481 transcript_region:SL2.40ch09:2333443..2337481+ go_terms:GO:0003677,GO:0006468 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 *-*- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006468 NbS00036020g0005.1 protein AED:0.17 eAED:0.17 QI:347|0.90|0.91|1|0.90|0.91|23|472|802; (*GB) gi|297743083|emb|CBI35950.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93042|RHD3_ARATH (e_value=0.0) Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana GN=RHD3 PE=1 SV=1;; (*TAIR) AT3G13870.1 (e_value=0.0) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802;; (*ITAG) Solyc03g121590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63727316-63737352 transcript_region:SL2.40ch03:63727316..63737352+ go_terms:GO:0031177 functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; GO:0031177 NbS00036020g0002.1 protein AED:0.61 eAED:0.79 QI:77|-1|0|1|-1|0|1|0|48 NbS00010336g0003.1 protein AED:0.68 eAED:0.68 QI:112|0|0.25|0.25|0.66|0.5|4|0|166; (*GB) gi|356512531|ref|XP_003524972.1| (e_value=5e-47) PREDICTED: uncharacterized protein LOC100500578 [Glycine max];; (*TAIR) AT4G18810.1 (e_value=4e-43) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:10322622-10325735 REVERSE LENGTH=596;; (*ITAG) Solyc02g072160.2.1 (e_value=1e-55) genomic_reference:SL2.40ch02 gene_region:36050355-36058273 transcript_region:SL2.40ch02:36050355..36058273+ go_terms:GO:0008152 functional_description:"NADH ubiquinone oxidoreductase complex I intermediate-associated protein 30 (AHRD V1 **-- B2IZH1_NOSP7); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 "; GO:0008152 NbS00029846g0008.1 protein AED:0.12 eAED:0.12 QI:2|1|0.5|1|1|1|2|0|696; (*GB) gi|359487354|ref|XP_003633574.1| (e_value=0.0) PREDICTED: protein gamma response 1-like [Vitis vinifera];; (*SWP) sp|Q9ZRT1|GR1_ARATH (e_value=3e-72) Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2;; (*TAIR) AT3G52115.1 (e_value=2e-73) | Symbols: ATGR1, ATCOM1, COM1, GR1 | gamma response gene 1 | chr3:19326333-19328245 FORWARD LENGTH=588;; (*ITAG) Solyc01g086930.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73595473-73597921 transcript_region:SL2.40ch01:73595473..73597921- functional_description:"Gamma response I protein-like (AHRD V1 *--- Q69WX8_ORYSJ); contains Interpro domain(s) IPR013882 DNA repair protein Sae2/CtIP "; NbS00029846g0003.1 protein AED:0.42 eAED:0.42 QI:0|0|0.5|0.5|1|1|2|99|67; (*GB) gi|326495464|dbj|BAJ85828.1| (e_value=1e-17) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|P35684|RL3_ORYSJ (e_value=5e-18) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G43170.4 (e_value=6e-19) | Symbols: ARP1, RPL3A, RP1 | ribosomal protein 1 | chr1:16267519-16268631 FORWARD LENGTH=306;; (*ITAG) Solyc01g104590.2.1 (e_value=9e-19) genomic_reference:SL2.40ch01 gene_region:84802263-84805701 transcript_region:SL2.40ch01:84802263..84805701- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3 (AHRD V1 ***- Q6SKP4_SOLLC); contains Interpro domain(s) IPR019926 Ribosomal protein L3, conserved site IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00029846g0009.1 protein AED:0.03 eAED:0.06 QI:0|0|0|1|0|0.33|3|0|204; (*GB) gi|88866527|gb|ABD57310.1| (e_value=6e-94) stress-associated protein 1 [Solanum lycopersicum];; (*SWP) sp|Q9LHJ8|SAP5_ARATH (e_value=2e-51) Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Arabidopsis thaliana GN=SAP5 PE=2 SV=1;; (*TAIR) AT3G12630.1 (e_value=1e-52) | Symbols: | A20/AN1-like zinc finger family protein | chr3:4012707-4013189 FORWARD LENGTH=160;; (*ITAG) Solyc01g086960.2.1 (e_value=1e-96) genomic_reference:SL2.40ch01 gene_region:73634863-73635936 transcript_region:SL2.40ch01:73634863..73635936- go_terms:GO:0005515 functional_description:"Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AHRD V1 *-*- C1BNQ4_9MAXI); contains Interpro domain(s) IPR000058 Zinc finger, AN1-type "; GO:0005515 NbS00051164g0004.1 protein AED:0.06 eAED:0.06 QI:168|1|1|1|1|0.9|10|569|880; (*GB) gi|296084039|emb|CBI24427.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XIN0|LHW_ARATH (e_value=3e-91) Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1;; (*TAIR) AT2G27230.2 (e_value=2e-92) | Symbols: LHW | transcription factor-related | chr2:11650895-11653840 FORWARD LENGTH=650;; (*ITAG) Solyc11g068960.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50615168-50621595 transcript_region:SL2.40ch11:50615168..50621595+ go_terms:GO:0045449 functional_description:"Uncharacterized basic helix-loop-helix protein At1g64625 (AHRD V1 *--- Y1462_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0045449 NbS00037338g0004.1 protein AED:0.18 eAED:0.18 QI:0|0.82|0.77|0.88|0.88|0.94|18|428|500; (*GB) gi|258678027|gb|ACV87735.1| (e_value=0.0) chloroplast envelope protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q7RTR2|NLRC3_HUMAN (e_value=2e-45) Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2;; (*TAIR) AT1G10510.1 (e_value=0.0) | Symbols: emb2004 | RNI-like superfamily protein | chr1:3461771-3465590 FORWARD LENGTH=605;; (*ITAG) Solyc05g006170.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:850717-856839 transcript_region:SL2.40ch05:850717..856839- functional_description:"NACHT, LRR and PYD domains-containing protein 5 (AHRD V1 *--- NALP5_BOVIN); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; NbS00030958g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0.33|1|1|1|3|0|415; (*GB) gi|147778709|emb|CAN60668.1| (e_value=1e-97) hypothetical protein VITISV_028262 [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=4e-80) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT3G14590.1 (e_value=5e-83) | Symbols: NTMC2TYPE6.2, NTMC2T6.2 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:4904448-4907506 REVERSE LENGTH=692;; (*ITAG) Solyc12g011420.1.1 (e_value=4e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4244827-4251000 transcript_region:SL2.40ch12:4244827..4251000- go_terms:GO:0006520 functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- D7L359_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0006520 NbS00030958g0002.1 protein AED:0.46 eAED:0.46 QI:0|0.6|0.33|1|1|1|6|0|192; (*GB) gi|359494388|ref|XP_002267637.2| (e_value=7e-84) PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera];; (*SWP) sp|Q93XX4|C2D61_ARATH (e_value=3e-82) C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2;; (*TAIR) AT1G53590.1 (e_value=2e-83) | Symbols: NTMC2TYPE6.1, NTMC2T6.1 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:19996556-20000127 FORWARD LENGTH=751;; (*ITAG) Solyc12g011420.1.1 (e_value=4e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4244827-4251000 transcript_region:SL2.40ch12:4244827..4251000- go_terms:GO:0006520 functional_description:"Integral membrane single C2 domain protein (AHRD V1 **-- D7L359_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; GO:0006520 NbS00006348g0001.1 protein AED:0.12 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|557; (*GB) gi|255561178|ref|XP_002521601.1| (e_value=0.0) Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q9FL03|SCL4_ARATH (e_value=2e-176) Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1;; (*TAIR) AT5G66770.1 (e_value=1e-177) | Symbols: | GRAS family transcription factor | chr5:26660723-26662477 FORWARD LENGTH=584;; (*ITAG) Solyc02g085340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42834882-42836711 transcript_region:SL2.40ch02:42834882..42836711- go_terms:GO:0005515,GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9MXP6_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbS00010371g0003.1 protein AED:0.09 eAED:0.10 QI:147|1|0.75|1|0|0|4|0|408; (*GB) gi|225446239|ref|XP_002263728.1| (e_value=1e-143) PREDICTED: ADIPOR-like receptor CG5315-like [Vitis vinifera];; (*SWP) sp|Q9VCY8|ADRL_DROME (e_value=1e-37) ADIPOR-like receptor CG5315 OS=Drosophila melanogaster GN=CG5315 PE=2 SV=2;; (*TAIR) AT5G20270.1 (e_value=2e-112) | Symbols: HHP1 | heptahelical transmembrane protein1 | chr5:6841025-6842656 REVERSE LENGTH=332;; (*ITAG) Solyc07g007800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2454357-2457432 transcript_region:SL2.40ch07:2454357..2457432+ go_terms:GO:0046872 functional_description:"Adiponectin receptor (AHRD V1 ***- Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0046872 NbS00011791g0010.1 protein AED:0.00 eAED:0.00 QI:192|1|1|1|0.5|0.33|3|243|80 NbS00011791g0011.1 protein AED:0.19 eAED:0.19 QI:0|1|0|1|0|0.5|2|0|71; (*GB) gi|225464816|ref|XP_002269292.1| (e_value=7e-22) PREDICTED: uncharacterized protein LOC100253491 [Vitis vinifera];; (*TAIR) AT3G22210.1 (e_value=6e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7839135-7839431 REVERSE LENGTH=69;; (*ITAG) Solyc12g006440.1.1 (e_value=2e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:920615-921352 transcript_region:SL2.40ch12:920615..921352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011791g0017.1 protein AED:0.32 eAED:0.40 QI:0|0|0|1|0.33|0.25|4|0|152; (*GB) gi|225450661|ref|XP_002282985.1| (e_value=3e-40) PREDICTED: probable protein phosphatase 2C 5 [Vitis vinifera];; (*SWP) sp|O80492|P2C05_ARATH (e_value=2e-37) Probable protein phosphatase 2C 5 OS=Arabidopsis thaliana GN=At1g09160 PE=2 SV=1;; (*TAIR) AT1G09160.1 (e_value=2e-38) | Symbols: | Protein phosphatase 2C family protein | chr1:2953199-2955059 REVERSE LENGTH=428;; (*ITAG) Solyc01g100110.2.1 (e_value=3e-42) genomic_reference:SL2.40ch01 gene_region:81958432-81962536 transcript_region:SL2.40ch01:81958432..81962536- go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00011791g0006.1 protein AED:0.13 eAED:0.13 QI:0|0|0|1|1|0|2|0|165; (*GB) gi|76160931|gb|ABA40429.1| (e_value=9e-34) unknown [Solanum tuberosum];; (*TAIR) AT3G06040.3 (e_value=3e-25) | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr3:1824516-1825076 REVERSE LENGTH=186;; (*ITAG) Solyc09g010030.1.1 (e_value=9e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3451744-3452328 transcript_region:SL2.40ch09:3451744..3452328+ go_terms:GO:0005515,GO:0003682 functional_description:"50S ribosomal protein L12-2 (AHRD V1 *-*- B6SHT7_MAIZE); contains Interpro domain(s) IPR015608 Ribosomal protein L12, chloroplast "; GO:0005515,GO:0003682 NbS00011791g0012.1 protein AED:0.32 eAED:0.35 QI:0|0.54|0.58|0.91|0.72|0.66|12|0|325; (*GB) gi|350537303|ref|NP_001233777.1| (e_value=4e-122) gamma aminobutyrate transaminase 3, chloroplastic [Solanum lycopersicum];; (*SWP) sp|Q84P52|GATP3_SOLLC (e_value=1e-123) Gamma aminobutyrate transaminase 3, chloroplastic OS=Solanum lycopersicum GN=GABA-TP3 PE=1 SV=1;; (*TAIR) AT3G22200.1 (e_value=5e-90) | Symbols: POP2, GABA-T, HER1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:7835286-7838863 FORWARD LENGTH=504;; (*ITAG) Solyc12g006450.1.1 (e_value=1e-124) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:921921-927162 transcript_region:SL2.40ch12:921921..927162- go_terms:GO:0030170 functional_description:"Aminotransferase-like protein (AHRD V1 ***- Q9LIE2_ARATH); contains Interpro domain(s) IPR005814 Aminotransferase class-III "; GO:0030170 NbS00014187g0011.1 protein AED:0.08 eAED:0.08 QI:144|0.94|0.95|1|0.84|0.85|20|400|585; (*GB) gi|356567330|ref|XP_003551874.1| (e_value=0.0) PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic [Glycine max];; (*SWP) sp|Q9SZ30|HIS5_ARATH (e_value=0.0) Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana GN=At4g26900 PE=1 SV=1;; (*TAIR) AT4G26900.1 (e_value=0.0) | Symbols: AT-HF, HISN4 | HIS HF | chr4:13515514-13519608 FORWARD LENGTH=592;; (*ITAG) Solyc07g064810.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64017771-64025505 transcript_region:SL2.40ch07:64017771..64025505- go_terms:GO:0000107 functional_description:"Imidazole glycerol phosphate synthase subunit hisF (AHRD V1 *-** D2RFM3_ARCPA); contains Interpro domain(s) IPR014640 Imidazole glycerol phosphate synthase HisHF "; GO:0000107 NbS00014187g0002.1 protein AED:0.29 eAED:0.29 QI:516|0.66|0.84|0.92|0.83|0.84|13|365|370; (*GB) gi|255578100|ref|XP_002529920.1| (e_value=1e-178) dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q9FLQ4|ODO2A_ARATH (e_value=5e-161) Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1;; (*TAIR) AT5G55070.1 (e_value=4e-162) | Symbols: | Dihydrolipoamide succinyltransferase | chr5:22347637-22350409 FORWARD LENGTH=464;; (*ITAG) Solyc07g064800.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64009800-64015982 transcript_region:SL2.40ch07:64009800..64015982+ go_terms:GO:0004149 functional_description:"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (AHRD V1 **** B6TRW8_MAIZE); contains Interpro domain(s) IPR006255 Dihydrolipoamide succinyltransferase "; GO:0004149 NbS00034034g0001.1 protein AED:0.55 eAED:0.58 QI:0|0|0|0.5|0|0|2|0|66; (*ITAG) Solyc01g007500.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00006688g0009.1 protein AED:0.15 eAED:0.15 QI:137|0.91|1|1|0.75|0.76|13|420|431; (*GB) gi|225458003|ref|XP_002280127.1| (e_value=0.0) PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Vitis vinifera];; (*SWP) sp|Q54UB1|TRM6_DICDI (e_value=2e-62) tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1;; (*TAIR) AT2G45730.1 (e_value=4e-173) | Symbols: | eukaryotic initiation factor 3 gamma subunit family protein | chr2:18836519-18839123 REVERSE LENGTH=446;; (*ITAG) Solyc04g081360.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62963579-62969484 transcript_region:SL2.40ch04:62963579..62969484- go_terms:GO:0005515,GO:0016429 functional_description:"tRNA (Adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 (AHRD V1 *-** C5JJB9_AJEDS); contains Interpro domain(s) IPR007316 Eukaryotic initiation factor 3, gamma subunit "; GO:0005515,GO:0016429 NbS00006688g0008.1 protein AED:0.40 eAED:0.54 QI:2|0|0|0.55|0.5|0.55|9|0|323; (*ITAG) Solyc04g081350.2.1 (e_value=4e-42) genomic_reference:SL2.40ch04 gene_region:62955513-62961934 transcript_region:SL2.40ch04:62955513..62961934- go_terms:GO:0003700 functional_description:"Transcription factor E2F (AHRD V1 **** B9GQW1_POPTR); contains Interpro domain(s) IPR015633 E2F Family "; GO:0003700 NbS00034240g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.83|1|1|1|6|255|386; (*GB) gi|255540167|ref|XP_002511148.1| (e_value=8e-160) palmitoyl-acyl carrier protein thioesterase [Ricinus communis];; (*SWP) sp|Q9SQI3|FATB_GOSHI (e_value=3e-110) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1;; (*TAIR) AT1G08510.1 (e_value=3e-113) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc03g097390.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53172933-53174981 transcript_region:SL2.40ch03:53172933..53174981- go_terms:GO:0016297,GO:0000036 functional_description:"Acyl-ACP thioesterase (AHRD V1 **** Q9FQY1_IRIGE); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00034240g0003.1 protein AED:0.42 eAED:0.57 QI:0|1|0|1|0|0.5|2|0|81 NbS00022629g0003.1 protein AED:0.36 eAED:0.36 QI:155|1|0.88|1|0.25|0.55|9|0|331; (*GB) gi|255564387|ref|XP_002523190.1| (e_value=1e-176) ARF GTPase activator, putative [Ricinus communis];; (*SWP) sp|Q9FVJ3|AGD12_ARATH (e_value=2e-174) ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1;; (*TAIR) AT4G21160.4 (e_value=2e-175) | Symbols: ZAC | Calcium-dependent ARF-type GTPase activating protein family | chr4:11284694-11286532 FORWARD LENGTH=337;; (*ITAG) Solyc02g024020.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:15499054-15510025 transcript_region:SL2.40ch02:15499054..15510025- go_terms:GO:0008060,GO:0005543 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 (AHRD V1 *--* AGAP3_MOUSE); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0008060,GO:0005543 NbS00008227g0003.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|1|1|3|414|208; (*GB) gi|225463022|ref|XP_002266038.1| (e_value=1e-57) PREDICTED: E3 ubiquitin-protein ligase arkadia-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8LPN7|RNG1L_ARATH (e_value=1e-11) E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1;; (*TAIR) AT2G15580.1 (e_value=7e-32) | Symbols: | RING/U-box superfamily protein | chr2:6797687-6798815 FORWARD LENGTH=196;; (*ITAG) Solyc07g007160.2.1 (e_value=5e-86) genomic_reference:SL2.40ch07 gene_region:1919123-1921221 transcript_region:SL2.40ch07:1919123..1921221- go_terms:GO:0008270 functional_description:"RING-H2 finger protein (AHRD V1 *-*- Q8LJR8_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00010341g0003.1 protein AED:0.16 eAED:0.16 QI:162|1|0.75|1|1|1|4|0|585; (*GB) gi|46367705|dbj|BAD15365.1| (e_value=0.0) nitrite reductase [Nicotiana tabacum];; (*SWP) sp|P38500|NIR_BETPN (e_value=0.0) Ferredoxin--nitrite reductase, chloroplastic OS=Betula pendula GN=NIR1 PE=2 SV=1;; (*TAIR) AT2G15620.1 (e_value=0.0) | Symbols: NIR1, NIR, ATHNIR | nitrite reductase 1 | chr2:6810552-6812666 FORWARD LENGTH=586;; (*ITAG) Solyc10g050890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46608443-46610651 transcript_region:SL2.40ch10:46608443..46610651- go_terms:GO:0005515 functional_description:"Nitrite reductase (AHRD V1 ***- Q76G13_TOBAC); contains Interpro domain(s) IPR006067 Nitrite and sulphite reductase 4Fe-4S region "; GO:0005515 NbS00004069g0001.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|87; (*ITAG) Solyc05g042170.1.1 (e_value=2e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:54236198-54236482 transcript_region:SL2.40ch05:54236198..54236482- functional_description:"Unknown Protein (AHRD V1)"; NbS00004069g0006.1 protein AED:0.34 eAED:0.34 QI:0|0|0.25|0.5|0.66|0.5|4|0|105; (*GB) gi|255589974|ref|XP_002535144.1| (e_value=1e-19) dicer-1, putative [Ricinus communis];; (*SWP) sp|Q69KJ0|RTL3_ORYSJ (e_value=3e-13) Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1;; (*ITAG) Solyc05g041920.2.1 (e_value=4e-31) genomic_reference:SL2.40ch05 gene_region:53383703-53387183 transcript_region:SL2.40ch05:53383703..53387183- go_terms:GO:0005515 functional_description:"Ribonuclease 3 (AHRD V1 ***- C3FP31_BACTB); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00052400g0010.1 protein AED:0.05 eAED:0.08 QI:351|0.78|0.73|1|0.78|0.8|15|661|885; (*GB) gi|73656868|gb|AAZ79373.1| (e_value=0.0) internal-motor kinesin [Nicotiana tabacum];; (*SWP) sp|Q99661|KIF2C_HUMAN (e_value=4e-115) Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2;; (*TAIR) AT3G16630.2 (e_value=0.0) | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794;; (*ITAG) Solyc05g054260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63358902-63368392 transcript_region:SL2.40ch05:63358902..63368392- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q940B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00052400g0002.1 protein AED:0.23 eAED:0.24 QI:0|0|0|1|1|1|2|0|253; (*GB) gi|356535103|ref|XP_003536088.1| (e_value=9e-13) PREDICTED: uncharacterized protein LOC100809272 [Glycine max];; (*TAIR) AT1G71050.1 (e_value=9e-15) | Symbols: HIPP20 | Heavy metal transport/detoxification superfamily protein | chr1:26803322-26803946 REVERSE LENGTH=152;; (*ITAG) Solyc05g054250.1.1 (e_value=2e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:63355135-63356097 transcript_region:SL2.40ch05:63355135..63356097- go_terms:GO:0030001 functional_description:"Heavy metal-associated domain containing protein expressed (AHRD V1 *-*- Q2QXS5_ORYSJ); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00003847g0007.1 protein AED:0.26 eAED:0.26 QI:309|0.63|0.66|0.83|0.09|0.25|12|236|355; (*GB) gi|350538261|ref|NP_001234334.1| (e_value=7e-111) guanylyl cyclase [Solanum lycopersicum];; (*SWP) sp|Q8BZI6|CV013_MOUSE (e_value=1e-26) Uncharacterized protein C22orf13 homolog OS=Mus musculus PE=2 SV=2;; (*TAIR) AT5G05930.1 (e_value=5e-87) | Symbols: ATGC1, GC1 | guanylyl cyclase 1 | chr5:1780270-1782659 REVERSE LENGTH=274;; (*ITAG) Solyc03g079850.2.1 (e_value=1e-113) genomic_reference:SL2.40ch03 gene_region:45200903-45215683 transcript_region:SL2.40ch03:45200903..45215683- functional_description:"Guanylyl cyclase (AHRD V1 **-- A0FK54_SOLLC); contains Interpro domain(s) IPR018616 Guanylyl cyclase "; NbS00007830g0103.1 protein AED:0.46 eAED:0.60 QI:0|0|0|0.66|1|1|3|0|109 NbS00007830g0101.1 protein AED:0.42 eAED:0.75 QI:0|0|0|1|1|1|2|0|70 NbS00008106g0003.1 protein AED:0.12 eAED:0.12 QI:126|0.75|0.8|1|1|1|5|341|382; (*GB) gi|289065765|gb|ADC80920.1| (e_value=7e-170) delta-9 fatty acid desaturase [Vernicia fordii];; (*SWP) sp|Q949X0|ADS3_ARATH (e_value=8e-162) Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=2 SV=2;; (*TAIR) AT3G15850.1 (e_value=6e-163) | Symbols: FAD5, FADB, JB67, ADS3 | fatty acid desaturase 5 | chr3:5359087-5360998 FORWARD LENGTH=371;; (*ITAG) Solyc03g116730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60070030-60072447 transcript_region:SL2.40ch03:60070030..60072447- go_terms:GO:0004768 functional_description:"Stearoyl-CoA 9-desaturase (AHRD V1 **** D7E3I2_NOSA0); contains Interpro domain(s) IPR015876 Fatty acid desaturase, type 1, core "; GO:0004768 NbS00019501g0001.1 protein AED:0.21 eAED:0.21 QI:0|-1|0|1|-1|1|1|0|115 NbS00038532g0002.1 protein AED:0.17 eAED:0.30 QI:214|0|0.33|0.66|0|0|3|0|187; (*GB) gi|118487801|gb|ABK95724.1| (e_value=2e-63) unknown [Populus trichocarpa];; (*SWP) sp|Q7TMR0|PCP_MOUSE (e_value=7e-35) Lysosomal Pro-X carboxypeptidase OS=Mus musculus GN=Prcp PE=2 SV=2;; (*TAIR) AT2G24280.1 (e_value=5e-64) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc07g005190.2.1 (e_value=3e-78) genomic_reference:SL2.40ch07 gene_region:182494-187318 transcript_region:SL2.40ch07:182494..187318- go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbC25127942g0001.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|157; (*GB) gi|357472183|ref|XP_003606376.1| (e_value=9e-40) hypothetical protein MTR_4g059320 [Medicago truncatula];; (*TAIR) AT5G03230.1 (e_value=3e-31) | Symbols: | Protein of unknown function, DUF584 | chr5:769636-770136 FORWARD LENGTH=166;; (*ITAG) Solyc09g007790.1.1 (e_value=2e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:1315444-1315920 transcript_region:SL2.40ch09:1315444..1315920+ go_terms:GO:0005515 functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 ***- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; GO:0005515 NbS00004214g0014.1 protein AED:0.27 eAED:0.42 QI:0|0.5|0|1|0|0|3|0|157 NbS00004214g0010.1 protein AED:0.13 eAED:0.14 QI:0|0.64|0.53|1|0.92|0.86|15|0|1338; (*GB) gi|225439033|ref|XP_002263744.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248418 [Vitis vinifera];; (*TAIR) AT5G24710.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00004214g0011.1 protein AED:0.27 eAED:0.27 QI:0|1|0.66|1|1|0.66|3|0|380; (*GB) gi|224094831|ref|XP_002310256.1| (e_value=6e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50910.1 (e_value=4e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66480.1); Has 76 Blast hits to 75 proteins in 28 species: Archae - 0; Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:18920189-18921999 FORWARD LENGTH=447;; (*ITAG) Solyc01g102500.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83050648-83054617 transcript_region:SL2.40ch01:83050648..83054617- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 *-*- Q9FJZ1_ARATH)"; NbS00029296g0002.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|114; (*GB) gi|255585307|ref|XP_002533352.1| (e_value=2e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G59880.1 (e_value=4e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44010.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:22121069-22121446 FORWARD LENGTH=125;; (*ITAG) Solyc12g017960.1.1 (e_value=3e-15) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:8877855-8878118 transcript_region:SL2.40ch12:8877855..8878118- functional_description:"Unknown Protein (AHRD V1)"; NbS00047399g0007.1 protein AED:0.12 eAED:0.12 QI:101|0.66|1|1|1|1|4|510|508; (*GB) gi|225428257|ref|XP_002282312.1| (e_value=0.0) PREDICTED: rop guanine nucleotide exchange factor 1 [Vitis vinifera];; (*SWP) sp|Q93ZY2|ROGF1_ARATH (e_value=3e-165) Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2;; (*TAIR) AT4G38430.1 (e_value=2e-166) | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide exchange factor 1 | chr4:17986643-17988659 FORWARD LENGTH=548;; (*ITAG) Solyc04g082110.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63488748-63491962 transcript_region:SL2.40ch04:63488748..63491962- go_terms:GO:0005515,GO:0005089 functional_description:"Rop guanine nucleotide exchange factor 1 (AHRD V1 **-* ROGF1_ARATH); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005515,GO:0005089 NbS00018217g0005.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.4|1|0.75|0.6|5|0|298; (*GB) gi|363807662|ref|NP_001241906.1| (e_value=8e-111) uncharacterized protein LOC100808453 [Glycine max];; (*SWP) sp|P52410|KASC1_ARATH (e_value=1e-91) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=1 SV=2;; (*TAIR) AT5G46290.1 (e_value=9e-93) | Symbols: KASI, KAS1 | 3-ketoacyl-acyl carrier protein synthase I | chr5:18774439-18776629 REVERSE LENGTH=473;; (*ITAG) Solyc02g070790.2.1 (e_value=4e-92) genomic_reference:SL2.40ch02 gene_region:34974215-34978260 transcript_region:SL2.40ch02:34974215..34978260- go_terms:GO:0005515,GO:0004315 functional_description:"3-oxoacyl-(Acyl-carrier-protein) synthase 2 (AHRD V1 **** D0ZZB8_CHLPP); contains Interpro domain(s) IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 "; GO:0005515,GO:0004315 NbS00007893g0026.1 protein AED:0.13 eAED:0.21 QI:2|0|0|0.8|0.25|0|5|0|321; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-41) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc09g059680.1.1 (e_value=8e-87) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50721959-50723633 transcript_region:SL2.40ch09:50721959..50723633+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9SLM0_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00007893g0021.1 protein AED:0.36 eAED:0.43 QI:0|0|0|0.66|1|1|6|0|215; (*GB) gi|356508304|ref|XP_003522898.1| (e_value=1e-101) PREDICTED: uncharacterized protein LOC100783495 [Glycine max];; (*SWP) sp|P24859|SEC14_KLULA (e_value=3e-54) SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2;; (*TAIR) AT4G34580.1 (e_value=9e-103) | Symbols: COW1, SRH1 | Sec14p-like phosphatidylinositol transfer family protein | chr4:16515422-16518527 FORWARD LENGTH=554;; (*ITAG) Solyc04g080690.1.1 (e_value=1e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62380831-62382926 transcript_region:SL2.40ch04:62380831..62382926- go_terms:GO:0008526 functional_description:"SEC14-like protein (AHRD V1 **-- Q9T027_ARATH); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00007893g0024.1 protein AED:0.42 eAED:0.43 QI:1|0.66|0.4|1|0.66|0.6|10|0|328; (*GB) gi|8096273|dbj|BAA95791.1| (e_value=1e-158) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G19660.2 (e_value=6e-132) | Symbols: | Wound-responsive family protein | chr1:6800361-6802240 REVERSE LENGTH=329;; (*ITAG) Solyc04g080700.2.1 (e_value=1e-136) genomic_reference:SL2.40ch04 gene_region:62383826-62386863 transcript_region:SL2.40ch04:62383826..62386863- functional_description:"Wound responsive protein (Fragment) (AHRD V1 **-- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "; NbS00007893g0007.1 protein AED:0.07 eAED:0.07 QI:208|1|1|1|1|1|2|1118|187; (*GB) gi|255538722|ref|XP_002510426.1| (e_value=3e-54) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT3G50930.1 (e_value=5e-38) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc04g080680.2.1 (e_value=4e-65) genomic_reference:SL2.40ch04 gene_region:62378374-62380386 transcript_region:SL2.40ch04:62378374..62380386+ go_terms:GO:0042623,GO:0005515 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 **-- PRS8_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00011710g0012.1 protein AED:0.05 eAED:0.05 QI:225|1|1|1|0.33|0.25|4|89|113; (*ITAG) Solyc01g066510.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:66889646-66898959 transcript_region:SL2.40ch01:66889646..66898959- functional_description:"Genomic DNA chromosome 5 TAC clone K21P3 (AHRD V1 **-- Q9FJ23_ARATH); contains Interpro domain(s) IPR001298 Filamin/ABP280 repeat "; NbS00011710g0013.1 protein AED:0.29 eAED:0.31 QI:0|0|0|1|0.5|1|3|0|265; (*GB) gi|224115082|ref|XP_002316935.1| (e_value=6e-130) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54240.1 (e_value=2e-113) | Symbols: | Protein of unknown function (DUF1223) | chr5:22023339-22024461 REVERSE LENGTH=282;; (*ITAG) Solyc07g063620.2.1 (e_value=6e-154) genomic_reference:SL2.40ch07 gene_region:63268542-63271127 transcript_region:SL2.40ch07:63268542..63271127+ functional_description:"Uncharacterized secreted protein (AHRD V1 **-- B6TUX2_MAIZE); contains Interpro domain(s) IPR010634 Protein of unknown function DUF1223 "; NbS00011710g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|113; (*GB) gi|225461306|ref|XP_002281713.1| (e_value=3e-40) PREDICTED: dynein light chain LC6, flagellar outer arm [Vitis vinifera];; (*SWP) sp|O02414|DYL1_ANTCR (e_value=4e-20) Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1;; (*TAIR) AT4G27360.1 (e_value=9e-38) | Symbols: | Dynein light chain type 1 family protein | chr4:13694032-13694517 FORWARD LENGTH=103;; (*ITAG) Solyc07g063610.2.1 (e_value=9e-54) genomic_reference:SL2.40ch07 gene_region:63265503-63266935 transcript_region:SL2.40ch07:63265503..63266935- go_terms:GO:0042803 functional_description:"Dynein light chain 2 cytoplasmic (AHRD V1 ***- C3KIM6_ANOFI); contains Interpro domain(s) IPR001372 Dynein light chain, type 1 and 2 "; GO:0042803 NbS00011710g0015.1 protein AED:0.18 eAED:0.24 QI:0|0.8|0.83|1|0.8|0.83|6|0|261; (*GB) gi|224122882|ref|XP_002330387.1| (e_value=3e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q1ECE0|VAP41_ARATH (e_value=2e-89) Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1;; (*TAIR) AT5G54110.1 (e_value=2e-90) | Symbols: ATMAMI, MAMI | membrane-associated mannitol-induced | chr5:21958356-21960367 FORWARD LENGTH=266;; (*ITAG) Solyc07g063630.2.1 (e_value=4e-122) genomic_reference:SL2.40ch07 gene_region:63271770-63275250 transcript_region:SL2.40ch07:63271770..63275250- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane family protein (AHRD V1 ***- D7MET3_ARALY); contains Interpro domain(s) IPR008962 PapD-like "; GO:0005198 NbS00035722g0008.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.6|0.5|0.6|5|0|120; (*ITAG) Solyc06g008150.2.1 (e_value=3e-24) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00035722g0009.1 protein AED:0.73 eAED:1.00 QI:0|0|0|0.33|0.5|0.33|3|0|93 NbS00027344g0015.1 protein AED:0.03 eAED:0.05 QI:0|0|0|1|1|1|2|0|388; (*GB) gi|359473025|ref|XP_003631233.1| (e_value=2e-143) PREDICTED: uncharacterized protein LOC100266416 [Vitis vinifera];; (*TAIR) AT1G13530.1 (e_value=6e-98) | Symbols: | Protein of unknown function (DUF1262) | chr1:4633740-4635129 REVERSE LENGTH=385;; (*ITAG) Solyc05g010460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4703441-4705121 transcript_region:SL2.40ch05:4703441..4705121- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010683 Protein of unknown function DUF1262 "; NbS00027344g0014.1 protein AED:0.29 eAED:0.31 QI:0|0.88|0.8|1|0.55|0.7|10|0|336; (*GB) gi|225429900|ref|XP_002281078.1| (e_value=3e-129) PREDICTED: ribonuclease H2 subunit B [Vitis vinifera];; (*SWP) sp|Q5HZP1|RNH2B_XENLA (e_value=2e-17) Ribonuclease H2 subunit B OS=Xenopus laevis GN=rnaseh2b PE=2 SV=1;; (*TAIR) AT4G20325.1 (e_value=1e-111) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10980124-10982426 FORWARD LENGTH=277;; (*ITAG) Solyc05g012940.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6054328-6059886 transcript_region:SL2.40ch05:6054328..6059886+ go_terms:GO:0005634 functional_description:"Ribonuclease H2 subunit B (AHRD V1 ***- B0WCS6_CULQU); contains Interpro domain(s) IPR019024 Ribonuclease H2, subunit B "; GO:0005634 NbS00027344g0013.1 protein AED:0.09 eAED:0.09 QI:165|0.33|0.25|1|0|0.25|4|0|620; (*GB) gi|48057667|gb|AAT39966.1| (e_value=0.0) Putative isopenicillin N epimerase, identical [Solanum demissum];; (*SWP) sp|P18549|CEFD_STRCL (e_value=6e-18) Isopenicillin N epimerase OS=Streptomyces clavuligerus GN=cefD PE=1 SV=3;; (*TAIR) AT5G26600.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr5:9377455-9378882 FORWARD LENGTH=475;; (*ITAG) Solyc01g068160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69652662-69658418 transcript_region:SL2.40ch01:69652662..69658418- go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase like (AHRD V1 **-- B0JY75_MICAN); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00036218g0015.1 protein AED:0.21 eAED:0.22 QI:45|0.83|0.84|0.96|0.87|0.84|25|0|941; (*GB) gi|255540397|ref|XP_002511263.1| (e_value=0.0) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=0.0) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=0.0) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111570.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56238115-56263186 transcript_region:SL2.40ch03:56238115..56263186+ go_terms:GO:0016757 functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8TE42_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00036218g0013.1 protein AED:0.15 eAED:0.15 QI:263|0.83|0.85|1|0.83|0.85|7|0|1278; (*GB) gi|225456789|ref|XP_002275305.1| (e_value=0.0) PREDICTED: lysine-specific demethylase REF6-like [Vitis vinifera];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=0.0) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT3G48430.1 (e_value=0.0) | Symbols: REF6 | relative of early flowering 6 | chr3:17935609-17940456 FORWARD LENGTH=1360;; (*ITAG) Solyc03g111590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56276500-56284535 transcript_region:SL2.40ch03:56276500..56284535- go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger protein-like (AHRD V1 *--- Q9FYD7_ARATH); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0005515,GO:0003700 NbS00036218g0016.1 protein AED:0.20 eAED:0.20 QI:102|1|0.66|1|0.8|1|6|0|518; (*GB) gi|225456787|ref|XP_002277300.1| (e_value=2e-134) PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera];; (*SWP) sp|Q5RJC5|C3H67_ARATH (e_value=3e-109) Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2;; (*TAIR) AT5G63260.2 (e_value=2e-110) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:25361900-25364453 FORWARD LENGTH=451;; (*ITAG) Solyc03g111580.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56264331-56273480 transcript_region:SL2.40ch03:56264331..56273480- go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 43 (AHRD V1 ***- C3H43_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00036218g0018.1 protein AED:0.37 eAED:0.37 QI:0|0.66|0.71|0.71|1|0.85|7|0|273; (*GB) gi|255540407|ref|XP_002511268.1| (e_value=2e-132) 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis];; (*SWP) sp|O33513|CBBY_RHOCA (e_value=2e-40) Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1;; (*TAIR) AT3G48420.1 (e_value=2e-132) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:17929743-17931551 FORWARD LENGTH=319;; (*ITAG) Solyc03g111610.2.1 (e_value=5e-167) genomic_reference:SL2.40ch03 gene_region:56300382-56304521 transcript_region:SL2.40ch03:56300382..56304521- go_terms:GO:0005515,GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 **** Q10I42_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016787 NbS00060480g0005.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|0.33|0.75|4|0|522; (*GB) gi|85068658|gb|ABC69409.1| (e_value=0.0) CYP71AT2v2 [Nicotiana tabacum];; (*SWP) sp|O65782|C83B1_ARATH (e_value=1e-126) Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1;; (*TAIR) AT4G31500.1 (e_value=9e-128) | Symbols: CYP83B1, SUR2, RNT1, RED1, ATR4 | cytochrome P450, family 83, subfamily B, polypeptide 1 | chr4:15273677-15275271 REVERSE LENGTH=499;; (*ITAG) Solyc09g092640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66987311-66989373 transcript_region:SL2.40ch09:66987311..66989373+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00017968g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|127 NbS00002677g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|0.85|1|1|1|7|0|806; (*GB) gi|147860006|emb|CAN81047.1| (e_value=0.0) hypothetical protein VITISV_006765 [Vitis vinifera];; (*SWP) sp|Q9STE8|TC753_ARATH (e_value=0.0) Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1;; (*TAIR) AT3G46740.1 (e_value=0.0) | Symbols: TOC75-III, MAR1 | translocon at the outer envelope membrane of chloroplasts 75-III | chr3:17216104-17219296 REVERSE LENGTH=818;; (*ITAG) Solyc06g076360.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:43831465-43835828 transcript_region:SL2.40ch06:43831465..43835828- go_terms:GO:0006886,GO:0019867 functional_description:"Outer envelope membrane protein (AHRD V1 **-- Q31PR1_SYNE7); contains Interpro domain(s) IPR005689 Chloroplast envelope protein translocase, IAP75 "; GO:0006886,GO:0019867 NbS00002677g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|80|311; (*GB) gi|71067060|dbj|BAE16282.1| (e_value=5e-144) StPCL1 [Solanum tuberosum];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=2e-19) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G46640.2 (e_value=7e-63) | Symbols: PCL1 | Homeodomain-like superfamily protein | chr3:17183248-17184219 FORWARD LENGTH=323;; (*ITAG) Solyc06g076350.2.1 (e_value=1e-149) genomic_reference:SL2.40ch06 gene_region:43828645-43831301 transcript_region:SL2.40ch06:43828645..43831301+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00002677g0010.1 protein AED:0.05 eAED:0.05 QI:0|1|0.8|1|0.75|0.8|5|194|412; (*GB) gi|225436343|ref|XP_002270855.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100244777 [Vitis vinifera];; (*TAIR) AT3G46750.1 (e_value=2e-32) | Symbols: | unknown protein; Has 2631 Blast hits to 1984 proteins in 271 species: Archae - 6; Bacteria - 163; Metazoa - 1232; Fungi - 253; Plants - 141; Viruses - 8; Other Eukaryotes - 828 (source: NCBI BLink). | chr3:17219944-17221461 FORWARD LENGTH=388;; (*ITAG) Solyc06g076370.2.1 (e_value=1e-159) genomic_reference:SL2.40ch06 gene_region:43838888-43840782 transcript_region:SL2.40ch06:43838888..43840782+ functional_description:"Eukaryotic RNA polymerase II heptapeptide repeat (AHRD V1 *--- Q2HS33_MEDTR)"; NbS00002677g0214.1 protein AED:0.04 eAED:0.04 QI:77|1|1|1|1|1|6|215|583 NbS00002677g0215.1 protein AED:0.58 eAED:0.78 QI:2|0|0|0.66|0.8|0.66|6|0|164 NbS00002677g0204.1 protein AED:0.22 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|193 NbS00002677g0307.1 protein AED:0.22 eAED:0.22 QI:133|1|1|1|0.88|0.8|10|273|263 NbS00002677g0301.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|78 NbS00002677g0303.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|764 NbS00045898g0013.1 protein AED:0.29 eAED:0.29 QI:150|1|1|1|0|0.25|4|464|102; (*GB) gi|225460382|ref|XP_002266531.1| (e_value=5e-39) PREDICTED: uncharacterized protein LOC100261433 [Vitis vinifera];; (*TAIR) AT1G72170.1 (e_value=1e-32) | Symbols: | Domain of unknown function (DUF543) | chr1:27156403-27157516 FORWARD LENGTH=102;; (*ITAG) Solyc11g027870.1.1 (e_value=1e-56) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:15646640-15654343 transcript_region:SL2.40ch11:15646640..15654343- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007512 Protein of unknown function DUF543 "; NbS00045898g0007.1 protein AED:0.01 eAED:0.01 QI:2041|1|1|1|1|1|2|189|131; (*GB) gi|359493330|ref|XP_002264796.2| (e_value=5e-58) PREDICTED: carboxymethylenebutenolidase homolog [Vitis vinifera];; (*TAIR) AT1G35420.1 (e_value=6e-56) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:13026320-13027463 FORWARD LENGTH=310;; (*ITAG) Solyc11g027840.1.1 (e_value=4e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:15633855-15635833 transcript_region:SL2.40ch11:15633855..15635833+ go_terms:GO:0016787 functional_description:"Carboxymethylenebutenolidase homolog (AHRD V1 ***- C1BWH0_ESOLU); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0016787 NbS00045898g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0.71|1|0.83|0.71|7|0|263; (*GB) gi|359493332|ref|XP_002264725.2| (e_value=4e-96) PREDICTED: uncharacterized protein LOC100244294 [Vitis vinifera];; (*TAIR) AT1G35340.1 (e_value=6e-88) | Symbols: | ATP-dependent protease La (LON) domain protein | chr1:12977768-12979749 FORWARD LENGTH=316;; (*ITAG) Solyc11g027830.1.1 (e_value=3e-132) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:15606158-15610007 transcript_region:SL2.40ch11:15606158..15610007+ go_terms:GO:0006508 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "; GO:0006508 NbS00040985g0006.1 protein AED:0.16 eAED:0.16 QI:116|0.89|0.9|0.95|0.89|0.9|20|491|1340; (*GB) gi|359473493|ref|XP_002268761.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: protein PHYLLO, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q15KI9|PHYLO_ARATH (e_value=0.0) Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2;; (*TAIR) AT1G68890.1 (e_value=0.0) | Symbols: | magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases | chr1:25896988-25906553 FORWARD LENGTH=1715;; (*ITAG) Solyc04g005190.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:130395-145641 transcript_region:SL2.40ch04:130395..145641+ go_terms:GO:0009063,GO:0009234 functional_description:"2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (AHRD V1 *-*- D5A2Q7_SPIPL); contains Interpro domain(s) IPR004433 Menaquinone biosynthesis protein "; GO:0009063,GO:0009234 NbS00040985g0007.1 protein AED:0.32 eAED:0.32 QI:147|1|1|1|0.71|0.62|8|50|345; (*GB) gi|224108609|ref|XP_002314907.1| (e_value=1e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q15KI9|PHYLO_ARATH (e_value=6e-55) Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2 SV=2;; (*TAIR) AT1G68890.1 (e_value=4e-56) | Symbols: | magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases | chr1:25896988-25906553 FORWARD LENGTH=1715;; (*ITAG) Solyc04g005180.2.1 (e_value=6e-129) genomic_reference:SL2.40ch04 gene_region:123829-128910 transcript_region:SL2.40ch04:123829..128910+ functional_description:"2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding protein (AHRD V1 **-- D7KWW2_ARALY)"; NbS00057604g0005.1 protein AED:0.13 eAED:0.13 QI:259|0.6|0.33|1|1|1|6|0|297; (*GB) gi|225439489|ref|XP_002268055.1| (e_value=3e-75) PREDICTED: uncharacterized protein LOC100265991 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=5e-27) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=2e-56) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc10g076460.1.1 (e_value=4e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58766004-58767607 transcript_region:SL2.40ch10:58766004..58767607+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q2QYV2_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00017152g0003.1 protein AED:0.13 eAED:0.13 QI:141|1|1|1|1|1|11|382|647; (*GB) gi|224099297|ref|XP_002311428.1| (e_value=8e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q68FI1|L14BA_XENLA (e_value=2e-24) Protein LSM14 homolog B-A OS=Xenopus laevis GN=lsm14b-a PE=1 SV=1;; (*TAIR) AT1G26110.2 (e_value=1e-39) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=605;; (*ITAG) Solyc06g069280.2.1 (e_value=1e-177) genomic_reference:SL2.40ch06 gene_region:39428427-39437309 transcript_region:SL2.40ch06:39428427..39437309- functional_description:"Protein LSM14 homolog A (AHRD V1 *--- LS14A_PONAB); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00008896g0001.1 protein AED:0.35 eAED:0.35 QI:0|0.25|0.2|0.8|1|1|5|0|450; (*GB) gi|113205375|gb|AAU93591.2| (e_value=0.0) Zinc finger protein, putative [Solanum demissum];; (*SWP) sp|Q9VR91|HERC2_DROME (e_value=1e-24) Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3;; (*TAIR) AT1G69710.1 (e_value=7e-119) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:26222325-26226530 FORWARD LENGTH=1041;; (*ITAG) Solyc05g007290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1944633-1951051 transcript_region:SL2.40ch05:1944633..1951051- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00008896g0004.1 protein AED:0.31 eAED:0.79 QI:0|0.33|0|0.75|1|1|4|0|469; (*GB) gi|113205375|gb|AAU93591.2| (e_value=0.0) Zinc finger protein, putative [Solanum demissum];; (*SWP) sp|Q4U2R1|HERC2_MOUSE (e_value=1e-11) E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3;; (*TAIR) AT1G69710.1 (e_value=3e-102) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:26222325-26226530 FORWARD LENGTH=1041;; (*ITAG) Solyc05g007290.1.1 (e_value=3e-177) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1944633-1951051 transcript_region:SL2.40ch05:1944633..1951051- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00025087g0007.1 protein AED:0.31 eAED:0.35 QI:0|0.28|0.37|1|0.71|0.75|8|0|265; (*GB) gi|211906514|gb|ACJ11750.1| (e_value=2e-120) lactoylglutathione lyase [Gossypium hirsutum];; (*SWP) sp|Q39366|LGUL_BRAOG (e_value=2e-106) Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1;; (*TAIR) AT1G11840.6 (e_value=3e-107) | Symbols: GLX1 | glyoxalase I homolog | chr1:3995928-3997518 FORWARD LENGTH=322;; (*ITAG) Solyc02g080630.2.1 (e_value=2e-127) genomic_reference:SL2.40ch02 gene_region:39392539-39397791 transcript_region:SL2.40ch02:39392539..39397791- go_terms:GO:0046872 functional_description:"Lactoylglutathione lyase (AHRD V1 ***- D2D330_GOSHI); contains Interpro domain(s) IPR004361 Glyoxalase I "; GO:0046872 NbS00025087g0011.1 protein AED:0.10 eAED:0.10 QI:0|0.5|0.33|0.66|0|0.66|3|434|79; (*GB) gi|255554867|ref|XP_002518471.1| (e_value=4e-23) prephenate dehydratase, putative [Ricinus communis];; (*SWP) sp|Q9SA96|AROD1_ARATH (e_value=1e-21) Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1;; (*TAIR) AT1G11790.1 (e_value=9e-23) | Symbols: ADT1 | arogenate dehydratase 1 | chr1:3981476-3984962 FORWARD LENGTH=392;; (*ITAG) Solyc02g080620.2.1 (e_value=7e-25) genomic_reference:SL2.40ch02 gene_region:39383955-39391360 transcript_region:SL2.40ch02:39383955..39391360+ go_terms:GO:0047769 functional_description:"Prephenate dehydratase family protein (AHRD V1 **** D7KMI7_ARALY); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0047769 NbS00025087g0009.1 protein AED:0.29 eAED:0.29 QI:282|1|0.88|1|1|1|9|0|354; (*GB) gi|302144131|emb|CBI23236.3| (e_value=6e-174) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SA96|AROD1_ARATH (e_value=4e-158) Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1;; (*TAIR) AT1G11790.1 (e_value=3e-159) | Symbols: ADT1 | arogenate dehydratase 1 | chr1:3981476-3984962 FORWARD LENGTH=392;; (*ITAG) Solyc02g080620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39383955-39391360 transcript_region:SL2.40ch02:39383955..39391360+ go_terms:GO:0047769 functional_description:"Prephenate dehydratase family protein (AHRD V1 **** D7KMI7_ARALY); contains Interpro domain(s) IPR001086 Prephenate dehydratase "; GO:0047769 NbS00044570g0003.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|183|480; (*GB) gi|255561618|ref|XP_002521819.1| (e_value=1e-66) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q91XE8|TM205_MOUSE (e_value=3e-12) Transmembrane protein 205 OS=Mus musculus GN=Tmem205 PE=1 SV=1;; (*TAIR) AT1G72100.1 (e_value=3e-61) | Symbols: | late embryogenesis abundant domain-containing protein / LEA domain-containing protein | chr1:27127250-27128811 FORWARD LENGTH=480;; (*ITAG) Solyc06g065050.1.1 (e_value=5e-169) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36958423-36959849 transcript_region:SL2.40ch06:36958423..36959849- functional_description:"Transmembrane protein 205 (AHRD V1 *-*- TM205_MOUSE)"; NbS00061294g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|314; (*GB) gi|225430563|ref|XP_002262758.1| (e_value=1e-143) PREDICTED: uncharacterized protein LOC100257058 isoform 1 [Vitis vinifera];; (*TAIR) AT5G10750.1 (e_value=2e-140) | Symbols: | Protein of unknown function (DUF1336) | chr5:3399072-3399980 FORWARD LENGTH=302;; (*ITAG) Solyc08g068880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55178060-55179007 transcript_region:SL2.40ch08:55178060..55179007- functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00024382g0003.1 protein AED:0.23 eAED:0.23 QI:56|1|1|1|0.62|0.66|9|353|379; (*GB) gi|297738062|emb|CBI27263.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q99MB4|CBWD1_RAT (e_value=2e-73) COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2;; (*TAIR) AT1G26520.1 (e_value=0.0) | Symbols: | Cobalamin biosynthesis CobW-like protein | chr1:9163448-9165594 REVERSE LENGTH=374;; (*ITAG) Solyc05g012460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5699530-5703203 transcript_region:SL2.40ch05:5699530..5703203- go_terms:GO:0005515,GO:0003824 functional_description:"Cobalamin synthesis protein P (AHRD V1 **-- B7KCN9_CYAP7); contains Interpro domain(s) IPR003495 Cobalamin (vitamin B12) biosynthesis CobW-like "; GO:0005515,GO:0003824 NbS00038807g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|384; (*GB) gi|2346988|dbj|BAA21928.1| (e_value=6e-133) ZPT4-4 [Petunia x hybrida];; (*SWP) sp|Q9SHD0|ZAT4_ARATH (e_value=4e-25) Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1;; (*TAIR) AT2G45120.1 (e_value=3e-26) | Symbols: | C2H2-like zinc finger protein | chr2:18603680-18604624 FORWARD LENGTH=314;; (*ITAG) Solyc03g115450.1.1 (e_value=5e-121) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59208867-59210204 transcript_region:SL2.40ch03:59208867..59210204+ go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 *-** Q4U316_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00030896g0006.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|392; (*GB) gi|297739466|emb|CBI29648.3| (e_value=2e-143) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G10280.1 (e_value=3e-141) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3366795-3368739 REVERSE LENGTH=412;; (*ITAG) Solyc01g103150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83577505-83582190 transcript_region:SL2.40ch01:83577505..83582190+ functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00030896g0007.1 protein AED:0.23 eAED:0.24 QI:433|0.71|0.86|0.93|0.78|0.86|15|296|412; (*GB) gi|359486223|ref|XP_002265374.2| (e_value=4e-151) PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera];; (*TAIR) AT4G18530.1 (e_value=2e-147) | Symbols: | Protein of unknown function (DUF707) | chr4:10217749-10220285 FORWARD LENGTH=389;; (*ITAG) Solyc01g103170.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83589714-83597304 transcript_region:SL2.40ch01:83589714..83597304- go_terms:GO:0006508 functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; GO:0006508 NbS00060880g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|164; (*GB) gi|356501691|ref|XP_003519657.1| (e_value=6e-55) PREDICTED: F-box protein SNE-like [Glycine max];; (*SWP) sp|Q9LUB6|SNE_ARATH (e_value=2e-37) F-box protein SNE OS=Arabidopsis thaliana GN=SNE PE=1 SV=1;; (*TAIR) AT5G48170.1 (e_value=1e-38) | Symbols: SLY2 | F-box family protein | chr5:19532729-19533202 REVERSE LENGTH=157;; (*ITAG) Solyc07g047680.1.1 (e_value=8e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56237088-56237591 transcript_region:SL2.40ch07:56237088..56237591+ functional_description:"F-box protein GID2 (AHRD V1 *-*- B6SU06_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037541g0001.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|1|1|3|0|410; (*GB) gi|356525790|ref|XP_003531506.1| (e_value=4e-162) PREDICTED: nitrile-specifier protein 5-like [Glycine max];; (*SWP) sp|Q93XW5|NSP5_ARATH (e_value=1e-125) Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1;; (*TAIR) AT3G07720.1 (e_value=3e-159) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329;; (*ITAG) Solyc05g024410.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:31650811-31654017 transcript_region:SL2.40ch05:31650811..31654017+ functional_description:"Kelch-like protein 9 (AHRD V1 ***- KLHL9_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00037541g0005.1 protein AED:0.57 eAED:0.57 QI:71|0|0.5|0.5|1|1|2|0|60 NbS00037541g0008.1 protein AED:0.30 eAED:0.30 QI:231|1|0.66|1|1|1|3|0|118; (*GB) gi|224129182|ref|XP_002320521.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT4G13500.1 (e_value=3e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7856987-7857874 REVERSE LENGTH=125;; (*ITAG) Solyc05g024430.2.1 (e_value=7e-44) genomic_reference:SL2.40ch05 gene_region:31716103-31717615 transcript_region:SL2.40ch05:31716103..31717615- functional_description:"Unknown Protein (AHRD V1)"; NbS00004563g0003.1 protein AED:0.24 eAED:0.24 QI:99|1|0.5|1|1|0.5|2|0|70 NbS00021620g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|371|117; (*GB) gi|147798030|emb|CAN71778.1| (e_value=2e-43) hypothetical protein VITISV_019814 [Vitis vinifera];; (*TAIR) AT3G26510.4 (e_value=8e-37) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc06g071750.2.1 (e_value=2e-60) genomic_reference:SL2.40ch06 gene_region:40585640-40586725 transcript_region:SL2.40ch06:40585640..40586725+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00040591g0007.1 protein AED:0.28 eAED:0.29 QI:0|0.33|0|1|0.33|0.25|4|0|253; (*GB) gi|297738695|emb|CBI27940.3| (e_value=2e-27) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g032260.2.1 (e_value=9e-82) genomic_reference:SL2.40ch07 gene_region:36169551-36175792 transcript_region:SL2.40ch07:36169551..36175792+ functional_description:"Os01g0600300 protein (Fragment) (AHRD V1 ***- Q0JLH4_ORYSJ)"; NbS00040591g0006.1 protein AED:0.37 eAED:0.40 QI:0|0|0|1|0|0|2|0|150; (*GB) gi|302747560|gb|ADL63261.1| (e_value=4e-62) Atp1 [Nyssa sylvatica];; (*SWP) sp|P18260|ATPAM_HELAN (e_value=2e-61) ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=9e-61) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00001410g0003.1 protein AED:0.05 eAED:0.06 QI:0|0.5|0.33|1|0.5|0.33|3|0|315; (*GB) gi|224096171|ref|XP_002310560.1| (e_value=2e-83) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=2e-45) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1;; (*TAIR) AT1G34670.1 (e_value=3e-65) | Symbols: AtMYB93, MYB93 | myb domain protein 93 | chr1:12709128-12710423 FORWARD LENGTH=365;; (*ITAG) Solyc05g051550.1.1 (e_value=4e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:61076188-61078333 transcript_region:SL2.40ch05:61076188..61078333+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **-* Q9SBF3_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00012133g0015.1 protein AED:0.03 eAED:0.03 QI:118|1|0.5|1|1|0.5|2|27|37 NbS00012133g0012.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|1|1|2|0|360; (*GB) gi|225441959|ref|XP_002264087.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254979 isoform 1 [Vitis vinifera];; (*TAIR) AT5G50420.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:20530453-20532635 REVERSE LENGTH=566;; (*ITAG) Solyc06g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36260867-36264210 transcript_region:SL2.40ch06:36260867..36264210+ functional_description:"Protein-O-fucosyltransferase-like protein (AHRD V1 ***- D8RI05_SELML); contains Interpro domain(s) IPR019378 GDP-fucose protein O-fucosyltransferase "; NbS00012133g0013.1 protein AED:0.31 eAED:0.31 QI:0|0.83|1|1|0.83|0.85|7|89|231; (*GB) gi|15220931|ref|NP_175779.1| (e_value=1e-93) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G53760.1 (e_value=3e-96) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2343 (InterPro:IPR018786); Has 171 Blast hits to 171 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:20069159-20070918 REVERSE LENGTH=272;; (*ITAG) Solyc06g063130.2.1 (e_value=7e-123) genomic_reference:SL2.40ch06 gene_region:36265373-36270935 transcript_region:SL2.40ch06:36265373..36270935+ functional_description:"Conserved protein (Fungal and plant) (AHRD V1 *--- D4AZ45_ARTBC); contains Interpro domain(s) IPR018786 Protein of unknown function DUF2343 "; NbS00012133g0014.1 protein AED:0.35 eAED:0.35 QI:0|0.75|0.77|1|1|1|9|0|381; (*GB) gi|302773239|ref|XP_002970037.1| (e_value=0.0) hypothetical protein SELMODRAFT_146742 [Selaginella moellendorffii];; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=0.0) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=0.0) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00012133g0016.1 protein AED:0.20 eAED:0.23 QI:0|0.46|0.35|0.85|0.61|0.78|14|0|584; (*GB) gi|129563703|gb|ABO31100.1| (e_value=0.0) ovule receptor-like kinase 28 [Solanum chacoense];; (*SWP) sp|Q9C8M9|SRF6_ARATH (e_value=5e-159) Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1;; (*TAIR) AT1G53730.1 (e_value=4e-160) | Symbols: SRF6 | STRUBBELIG-receptor family 6 | chr1:20061771-20065475 FORWARD LENGTH=719;; (*ITAG) Solyc06g063150.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36278936-36283878 transcript_region:SL2.40ch06:36278936..36283878- go_terms:GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0004674 NbS00038498g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.33|0.42|0.85|0.66|0.71|7|0|362; (*GB) gi|114176|sp|P11043.1|AROA_PETHY (e_value=0.0) RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Flags: Precursor;; (*SWP) sp|P11043|AROA_PETHY (e_value=0.0) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic OS=Petunia hybrida PE=1 SV=1;; (*TAIR) AT2G45300.1 (e_value=0.0) | Symbols: | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | chr2:18677518-18679868 FORWARD LENGTH=520;; (*ITAG) Solyc05g050980.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60337084-60344001 transcript_region:SL2.40ch05:60337084..60344001+ go_terms:GO:0003866 functional_description:"3-phosphoshikimate 1-carboxyvinyltransferase (AHRD V1 **** Q30CZ8_FAGSY); contains Interpro domain(s) IPR001986 3-phosphoshikimate 1-carboxyvinyltransferase, core "; GO:0003866 NbS00049305g0001.1 protein AED:0.43 eAED:0.44 QI:0|0|0|0.66|1|1|3|0|114; (*GB) gi|255553735|ref|XP_002517908.1| (e_value=7e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G03600.1 (e_value=6e-20) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:1603820-1604308 REVERSE LENGTH=162;; (*ITAG) Solyc10g008310.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:2461625-2462146 transcript_region:SL2.40ch10:2461625..2462146- functional_description:"Unknown Protein (AHRD V1)"; NbS00012203g0004.1 protein AED:0.26 eAED:0.26 QI:146|0.71|0.87|1|1|1|8|0|257; (*GB) gi|356540134|ref|XP_003538545.1| (e_value=1e-104) PREDICTED: ranBP2-type zinc finger protein At1g67325-like [Glycine max];; (*SWP) sp|Q8GZ43|YZR3_ARATH (e_value=7e-78) RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana GN=At1g67325 PE=1 SV=1;; (*TAIR) AT1G67325.1 (e_value=2e-80) | Symbols: | Ran BP2/NZF zinc finger-like superfamily protein | chr1:25209825-25212412 REVERSE LENGTH=287;; (*ITAG) Solyc05g015500.2.1 (e_value=1e-115) genomic_reference:SL2.40ch05 gene_region:10760271-10764983 transcript_region:SL2.40ch05:10760271..10764983+ go_terms:GO:0005488 functional_description:"Zinc finger Ran-binding domain-containing protein 2 (AHRD V1 *-** ZRAB2_RAT); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00006995g0013.1 protein AED:0.02 eAED:0.02 QI:99|1|1|1|0.5|0.33|3|9|1115; (*GB) gi|225444822|ref|XP_002279012.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249046 [Vitis vinifera];; (*TAIR) AT5G20610.1 (e_value=2e-169) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26160.1); Has 918 Blast hits to 759 proteins in 180 species: Archae - 6; Bacteria - 105; Metazoa - 264; Fungi - 89; Plants - 167; Viruses - 5; Other Eukaryotes - 282 (source: NCBI BLink). | chr5:6969184-6972794 FORWARD LENGTH=1164;; (*ITAG) Solyc07g041180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49295574-49299106 transcript_region:SL2.40ch07:49295574..49299106+ go_terms:GO:0006306,GO:0016998 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR002482 Peptidoglycan-binding Lysin subgroup "; GO:0006306,GO:0016998 NbS00006995g0021.1 protein AED:0.01 eAED:0.01 QI:98|0.75|0.8|1|1|1|5|291|312; (*GB) gi|359484449|ref|XP_002278441.2| (e_value=2e-79) PREDICTED: nuclear transcription factor Y subunit A-3-like [Vitis vinifera];; (*SWP) sp|Q9SYH4|NFYA5_ARATH (e_value=3e-37) Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1;; (*TAIR) AT1G54160.1 (e_value=2e-38) | Symbols: NFYA5, NF-YA5 | nuclear factor Y, subunit A5 | chr1:20217581-20218706 REVERSE LENGTH=308;; (*ITAG) Solyc12g009050.1.1 (e_value=7e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2340487-2342273 transcript_region:SL2.40ch12:2340487..2342273- go_terms:GO:0005634,GO:0016602 functional_description:"Nuclear transcription factor Y subunit A-3 (AHRD V1 *-*- B6TQI5_MAIZE); contains Interpro domain(s) IPR001289 CCAAT-binding transcription factor, subunit B "; GO:0005634,GO:0016602 NbS00006995g0004.1 protein AED:0.04 eAED:0.04 QI:1700|1|1|1|0.66|0.5|4|265|222; (*GB) gi|359482710|ref|XP_003632813.1| (e_value=1e-96) PREDICTED: PHD finger protein ALFIN-LIKE 5 [Vitis vinifera];; (*SWP) sp|Q5XEM9|ALFL5_ARATH (e_value=5e-82) PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1;; (*TAIR) AT5G20510.1 (e_value=4e-83) | Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260;; (*ITAG) Solyc07g041190.2.1 (e_value=4e-98) genomic_reference:SL2.40ch07 gene_region:49299701-49303716 transcript_region:SL2.40ch07:49299701..49303716- go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00006995g0017.1 protein AED:0.19 eAED:0.19 QI:371|1|0.83|1|0.8|0.83|6|0|670; (*GB) gi|225444798|ref|XP_002278397.1| (e_value=0.0) PREDICTED: phospholipid:diacylglycerol acyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=0.0) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=0.0) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc07g041210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49315985-49322286 transcript_region:SL2.40ch07:49315985..49322286- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** A6R763_AJECN); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00006995g0020.1 protein AED:0.34 eAED:0.34 QI:180|0.8|0.83|1|0.4|0.5|6|0|305; (*GB) gi|359484451|ref|XP_002280213.2| (e_value=2e-176) PREDICTED: protein bem46-like [Vitis vinifera];; (*SWP) sp|P54069|BEM46_SCHPO (e_value=3e-50) Protein bem46 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bem46 PE=2 SV=3;; (*TAIR) AT5G20520.1 (e_value=3e-170) | Symbols: WAV2 | alpha/beta-Hydrolases superfamily protein | chr5:6943536-6946315 REVERSE LENGTH=308;; (*ITAG) Solyc07g041200.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:49305577-49311893 transcript_region:SL2.40ch07:49305577..49311893- functional_description:"Abhydrolase domain-containing protein 13 (AHRD V1 **-- C1BT46_9MAXI); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00018428g0008.1 protein AED:0.37 eAED:0.40 QI:220|0.7|0.61|1|0.4|0.52|21|0|803; (*GB) gi|359481171|ref|XP_002262626.2| (e_value=0.0) PREDICTED: importin-11-like [Vitis vinifera];; (*SWP) sp|Q9UI26|IPO11_HUMAN (e_value=6e-45) Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1;; (*TAIR) AT3G08960.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr3:2730405-2736762 REVERSE LENGTH=1010;; (*ITAG) Solyc09g005130.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:78471-95915 transcript_region:SL2.40ch09:78471..95915+ go_terms:GO:0006886,GO:0005488 functional_description:"Importin-11 (AHRD V1 ***- B0WJI0_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0006886,GO:0005488 NbS00038366g0003.1 protein AED:0.15 eAED:0.15 QI:498|1|1|1|0.57|0.62|8|726|101; (*GB) gi|224104849|ref|XP_002313590.1| (e_value=1e-66) predicted protein [Populus trichocarpa];; (*SWP) sp|P25076|CY11_SOLTU (e_value=5e-67) Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1;; (*TAIR) AT3G27240.1 (e_value=1e-57) | Symbols: | Cytochrome C1 family | chr3:10056144-10058370 REVERSE LENGTH=307;; (*ITAG) Solyc06g067920.2.1 (e_value=2e-68) genomic_reference:SL2.40ch06 gene_region:38487804-38494200 transcript_region:SL2.40ch06:38487804..38494200- go_terms:GO:0045153 functional_description:"Cytochrome c1 (AHRD V1 **** Q9FKS5_ARATH); contains Interpro domain(s) IPR002326 Cytochrome c1 "; GO:0045153 NbS00038366g0011.1 protein AED:0.15 eAED:0.25 QI:0|0|0|1|0|0|5|0|290; (*GB) gi|350539573|ref|NP_001233940.1| (e_value=1e-75) castasterone 26-hydroxylase [Solanum lycopersicum];; (*SWP) sp|O48786|C734A_ARATH (e_value=2e-48) Cytochrome P450 734A1 OS=Arabidopsis thaliana GN=CYP734A1 PE=2 SV=1;; (*TAIR) AT2G26710.1 (e_value=1e-49) | Symbols: BAS1, CYP734A1, CYP72B1 | Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520;; (*ITAG) Solyc03g120060.2.1 (e_value=2e-78) genomic_reference:SL2.40ch03 gene_region:62611911-62620038 transcript_region:SL2.40ch03:62611911..62620038+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00055919g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.66|0.5|1|0.66|0.75|4|0|307; (*GB) gi|359485668|ref|XP_002274157.2| (e_value=1e-146) PREDICTED: peroxidase 27-like [Vitis vinifera];; (*SWP) sp|Q43735|PER27_ARATH (e_value=3e-129) Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1;; (*TAIR) AT3G01190.1 (e_value=2e-130) | Symbols: | Peroxidase superfamily protein | chr3:67236-68477 REVERSE LENGTH=321;; (*ITAG) Solyc12g005790.1.1 (e_value=4e-179) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:440801-442920 transcript_region:SL2.40ch12:440801..442920- go_terms:GO:0055114 functional_description:"Peroxidase 27 (AHRD V1 ***- D7LAI1_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00055919g0009.1 protein AED:0.18 eAED:0.21 QI:0|0.66|0|1|0.66|0.5|4|0|252; (*GB) gi|678547|gb|AAA65637.1| (e_value=2e-121) peroxidase [Solanum lycopersicum];; (*SWP) sp|O23044|PER3_ARATH (e_value=9e-110) Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=2 SV=1;; (*TAIR) AT1G05260.1 (e_value=7e-111) | Symbols: RCI3, RCI3A | Peroxidase superfamily protein | chr1:1529827-1531271 FORWARD LENGTH=326;; (*ITAG) Solyc07g052540.2.1 (e_value=4e-135) genomic_reference:SL2.40ch07 gene_region:58359332-58361071 transcript_region:SL2.40ch07:58359332..58361071+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q07445_SOLLC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00055919g0010.1 protein AED:0.41 eAED:0.69 QI:0|0|0|1|0|0|3|0|71 NbS00006311g0032.1 protein AED:0.04 eAED:0.04 QI:0|0.5|0.11|1|0.5|0.33|9|0|827; (*GB) gi|225442229|ref|XP_002274879.1| (e_value=1e-168) PREDICTED: U-box domain-containing protein 34-like [Vitis vinifera];; (*SWP) sp|Q9SW11|PUB35_ARATH (e_value=4e-106) U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2;; (*TAIR) AT5G26150.1 (e_value=7e-164) | Symbols: | protein kinase family protein | chr5:9137461-9140099 REVERSE LENGTH=703;; (*ITAG) Solyc06g062820.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36020779-36025846 transcript_region:SL2.40ch06:36020779..36025846- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase (AHRD V1 *-** Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00006311g0023.1 protein AED:0.09 eAED:0.10 QI:24|1|0|1|1|1|2|0|525; (*GB) gi|20140867|sp|Q9MT28.1|THRC_SOLTU (e_value=0.0) RecName: Full=Threonine synthase, chloroplastic; Short=TS; Flags: Precursor;; (*SWP) sp|Q9MT28|THRC_SOLTU (e_value=0.0) Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G29840.1 (e_value=0.0) | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr4:14599434-14601014 REVERSE LENGTH=526;; (*ITAG) Solyc06g062840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36034006-36037124 transcript_region:SL2.40ch06:36034006..36037124- go_terms:GO:0004795 functional_description:"Threonine synthase (AHRD V1 **** Q2Q021_SOYBN); contains Interpro domain(s) IPR004450 Threonine synthase "; GO:0004795 NbS00006311g0030.1 protein AED:0.26 eAED:0.26 QI:197|1|1|1|0.4|0.5|6|556|145; (*GB) gi|359484453|ref|XP_003633111.1| (e_value=2e-77) PREDICTED: PHD finger protein ALFIN-LIKE 5-like [Vitis vinifera];; (*SWP) sp|Q9M2B4|ALFL3_ARATH (e_value=3e-74) PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1;; (*TAIR) AT3G42790.1 (e_value=2e-75) | Symbols: AL3 | alfin-like 3 | chr3:14878128-14879618 REVERSE LENGTH=250;; (*ITAG) Solyc12g096040.1.1 (e_value=1e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63453325-63461014 transcript_region:SL2.40ch12:63453325..63461014- go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 **-- D7M017_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00006311g0020.1 protein AED:0.27 eAED:0.28 QI:21|0.16|0.14|0.85|0.66|0.57|7|0|366; (*GB) gi|356561397|ref|XP_003548968.1| (e_value=2e-158) PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Glycine max];; (*SWP) sp|Q9FNA9|PDAT1_ARATH (e_value=4e-123) Phospholipid:diacylglycerol acyltransferase 1 OS=Arabidopsis thaliana GN=PDAT1 PE=2 SV=1;; (*TAIR) AT5G13640.1 (e_value=3e-124) | Symbols: ATPDAT, PDAT, PDAT1 | phospholipid:diacylglycerol acyltransferase | chr5:4393529-4397213 FORWARD LENGTH=671;; (*ITAG) Solyc03g121960.2.1 (e_value=7e-163) genomic_reference:SL2.40ch03 gene_region:64008721-64015716 transcript_region:SL2.40ch03:64008721..64015716- go_terms:GO:0046027 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 **** C5ME98_CANTT); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0046027 NbS00006311g0005.1 protein AED:0.35 eAED:0.35 QI:58|0.64|0.53|0.8|1|1|15|0|681; (*GB) gi|124484391|dbj|BAF46306.1| (e_value=0.0) ataxin-2 related protein [Ipomoea nil];; (*SWP) sp|Q55DE7|ATX2_DICDI (e_value=2e-33) Ataxin-2 homolog OS=Dictyostelium discoideum GN=atxn2 PE=3 SV=1;; (*TAIR) AT3G14010.3 (e_value=3e-120) | Symbols: CID4 | CTC-interacting domain 4 | chr3:4637164-4640691 FORWARD LENGTH=595;; (*ITAG) Solyc06g062860.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36045922-36059362 transcript_region:SL2.40ch06:36045922..36059362- functional_description:"Ataxin-2 (AHRD V1 *--- D3BPE8_POLPA); contains Interpro domain(s) IPR009604 LsmAD domain "; NbS00006311g0034.1 protein AED:0.10 eAED:0.10 QI:84|0.5|0.66|1|0|0|3|0|423; (*GB) gi|225442223|ref|XP_002277829.1| (e_value=0.0) PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Vitis vinifera];; (*SWP) sp|Q9LTR9|NMT1_ARATH (e_value=0.0) Glycylpeptide N-tetradecanoyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=1 SV=2;; (*TAIR) AT5G57020.1 (e_value=0.0) | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase | chr5:23075451-23076755 FORWARD LENGTH=434;; (*ITAG) Solyc06g062810.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:36018591-36019889 transcript_region:SL2.40ch06:36018591..36019889+ go_terms:GO:0004379 functional_description:"Glycylpeptide N-tetradecanoyltransferase (AHRD V1 **** B9N5F3_POPTR); contains Interpro domain(s) IPR000903 Myristoyl-CoA:protein N-myristoyltransferase "; GO:0004379 NbS00006311g0025.1 protein AED:0.31 eAED:0.55 QI:0|0.33|0.5|1|0.33|0.5|4|0|151; (*GB) gi|21593960|gb|AAM65903.1| (e_value=3e-35) unknown [Arabidopsis thaliana];; (*TAIR) AT4G26060.1 (e_value=7e-38) | Symbols: | Ribosomal protein L18ae family | chr4:13214972-13215955 REVERSE LENGTH=133;; (*ITAG) Solyc06g062830.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:36031628-36033778 transcript_region:SL2.40ch06:36031628..36033778+ functional_description:"Genomic DNA chromosome 5 P1 clone MHM17 (AHRD V1 ***- Q9LTR7_ARATH)"; NbS00031888g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|279; (*GB) gi|110293351|gb|ABG66307.1| (e_value=6e-149) CCR4 associated factor 1-related protein [Capsicum annuum];; (*SWP) sp|Q9FMS6|CAF1K_ARATH (e_value=6e-137) Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1;; (*TAIR) AT5G22250.1 (e_value=5e-138) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:7365605-7366441 REVERSE LENGTH=278;; (*ITAG) Solyc11g068770.1.1 (e_value=6e-167) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50490577-50491434 transcript_region:SL2.40ch11:50490577..50491434+ go_terms:GO:0046872,GO:0000175 functional_description:"CCR4-NOT transcription complex subunit 7 (AHRD V1 ***- B4FG48_MAIZE); contains Interpro domain(s) IPR006941 Ribonuclease CAF1 "; GO:0046872,GO:0000175 NbS00001795g0007.1 protein AED:0.01 eAED:0.01 QI:0|1|0.66|1|1|1|3|238|413; (*GB) gi|296083959|emb|CBI24347.3| (e_value=3e-134) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LFJ9|GLIP7_ARATH (e_value=2e-38) GDSL esterase/lipase 7 OS=Arabidopsis thaliana GN=GLIP7 PE=2 SV=1;; (*TAIR) AT4G10950.1 (e_value=9e-63) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc11g072040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52409893-52412521 transcript_region:SL2.40ch11:52409893..52412521- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71250 (AHRD V1 ***- GDL28_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00001795g0003.1 protein AED:0.32 eAED:0.34 QI:234|1|0.5|1|0|0|2|0|301; (*GB) gi|224102909|ref|XP_002312850.1| (e_value=9e-101) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94AD8|FBW3_ARATH (e_value=3e-96) F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1;; (*TAIR) AT5G21040.2 (e_value=2e-97) | Symbols: FBX2 | F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539;; (*ITAG) Solyc11g072050.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52413928-52415595 transcript_region:SL2.40ch11:52413928..52415595- functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND05_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00001795g0002.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|1|1|2|0|294; (*GB) gi|255561238|ref|XP_002521630.1| (e_value=3e-116) F-box and wd40 domain protein, putative [Ricinus communis];; (*SWP) sp|Q94AD8|FBW3_ARATH (e_value=1e-104) F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1;; (*TAIR) AT5G21040.2 (e_value=9e-106) | Symbols: FBX2 | F-box protein 2 | chr5:7145058-7146677 REVERSE LENGTH=539;; (*ITAG) Solyc11g072050.1.1 (e_value=7e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52413928-52415595 transcript_region:SL2.40ch11:52413928..52415595- functional_description:"WD-repeat protein (AHRD V1 *--- Q7ND05_GLOVI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00029078g0004.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|147; (*GB) gi|330318808|gb|AEC11064.1| (e_value=2e-75) photosystem I reaction center V [Camellia sinensis];; (*SWP) sp|Q9S7N7|PSAG_ARATH (e_value=6e-67) Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1;; (*TAIR) AT1G55670.1 (e_value=5e-68) | Symbols: PSAG | photosystem I subunit G | chr1:20802874-20803356 REVERSE LENGTH=160;; (*ITAG) Solyc07g066150.1.1 (e_value=1e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:64869442-64869882 transcript_region:SL2.40ch07:64869442..64869882+ go_terms:GO:0016020 functional_description:"Photosystem I reaction center subunit V (AHRD V1 ***- B6U534_MAIZE); contains Interpro domain(s) IPR017494 Photosystem I reaction center, PsaG, plant "; GO:0016020 NbS00029078g0013.1 protein AED:0.01 eAED:0.02 QI:0|0.66|0.25|1|0.66|0.25|4|0|729; (*GB) gi|147845807|emb|CAN80099.1| (e_value=3e-130) hypothetical protein VITISV_002699 [Vitis vinifera];; (*SWP) sp|P0CB21|Y4645_ARATH (e_value=1e-33) Uncharacterized protein At4g26450 OS=Arabidopsis thaliana GN=At4g26450 PE=4 SV=1;; (*TAIR) AT4G26450.1 (e_value=7e-35) | Symbols: | unknown protein; Has 614 Blast hits to 492 proteins in 137 species: Archae - 0; Bacteria - 94; Metazoa - 255; Fungi - 76; Plants - 69; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). | chr4:13362556-13364920 FORWARD LENGTH=708;; (*ITAG) Solyc10g005700.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:567523-571202 transcript_region:SL2.40ch10:567523..571202+ functional_description:"Os04g0431000 protein (Fragment) (AHRD V1 *-*- Q0JD52_ORYSJ)"; NbS00029078g0012.1 protein AED:0.36 eAED:0.52 QI:54|0|0|0.66|0.5|0.33|3|0|629; (*GB) gi|225463522|ref|XP_002265097.1| (e_value=7e-71) PREDICTED: WPP domain-interacting protein 2-like [Vitis vinifera];; (*SWP) sp|Q8GXA4|WIP1_ARATH (e_value=9e-25) WPP domain-interacting protein 1 OS=Arabidopsis thaliana GN=WIP1 PE=1 SV=1;; (*TAIR) AT4G26455.1 (e_value=7e-26) | Symbols: WIP1 | WPP domain interacting protein 1 | chr4:13365737-13367384 FORWARD LENGTH=489;; (*ITAG) Solyc07g066170.2.1 (e_value=7e-79) genomic_reference:SL2.40ch07 gene_region:64876218-64880395 transcript_region:SL2.40ch07:64876218..64880395- functional_description:"WPP domain-interacting protein 1 (AHRD V1 ***- WIP1_ARATH)"; NbS00010027g0001.1 protein AED:0.12 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|229; (*GB) gi|296084481|emb|CBI25040.3| (e_value=1e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|A3CCP9|P2C76_ORYSJ (e_value=3e-37) Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586001 PE=3 SV=2;; (*TAIR) AT3G63340.1 (e_value=1e-36) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc06g082700.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44719763-44720191 transcript_region:SL2.40ch06:44719763..44720191+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B1B5N6_PHYPA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00010027g0015.1 protein AED:0.07 eAED:0.07 QI:139|1|0.66|1|1|1|3|239|382; (*GB) gi|302398799|gb|ADL36694.1| (e_value=1e-86) GATA domain class transcription factor [Malus x domestica];; (*SWP) sp|Q9FH57|GATA5_ARATH (e_value=5e-67) GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1;; (*TAIR) AT5G66320.2 (e_value=4e-68) | Symbols: GATA5 | GATA transcription factor 5 | chr5:26496208-26497309 REVERSE LENGTH=339;; (*ITAG) Solyc02g084590.2.1 (e_value=6e-119) genomic_reference:SL2.40ch02 gene_region:42256115-42257468 transcript_region:SL2.40ch02:42256115..42257468- go_terms:GO:0005634,GO:0006355 functional_description:"GATA transcription factor 9 (AHRD V1 *-*- B6STZ1_MAIZE); contains Interpro domain(s) IPR016679 Transcription factor, GATA, plant "; GO:0005634,GO:0006355 NbS00010027g0021.1 protein AED:0.10 eAED:0.10 QI:0|0.66|0.5|0.9|0.88|0.8|10|988|872; (*GB) gi|356518000|ref|XP_003527672.1| (e_value=3e-79) PREDICTED: uncharacterized protein LOC100803683 [Glycine max];; (*TAIR) AT3G54350.3 (e_value=2e-41) | Symbols: emb1967 | Forkhead-associated (FHA) domain-containing protein | chr3:20122298-20126031 REVERSE LENGTH=702;; (*ITAG) Solyc02g084620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42279768-42289234 transcript_region:SL2.40ch02:42279768..42289234- functional_description:"Microspherule protein 1 (AHRD V1 *-*- B0WC51_CULQU); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00010027g0003.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|426; (*GB) gi|225431223|ref|XP_002273008.1| (e_value=2e-166) PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera];; (*SWP) sp|Q9M0G7|PXL2_ARATH (e_value=1e-19) Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1;; (*TAIR) AT5G66330.1 (e_value=2e-147) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:26500531-26501787 REVERSE LENGTH=418;; (*ITAG) Solyc02g084610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42274707-42275954 transcript_region:SL2.40ch02:42274707..42275954- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00010027g0016.1 protein AED:0.31 eAED:0.32 QI:0|0|0|0.5|1|1|2|0|154; (*ITAG) Solyc03g122220.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64164381-64164724 transcript_region:SL2.40ch03:64164381..64164724- go_terms:GO:0008270 functional_description:"GRF zinc finger containing protein (AHRD V1 *-*- Q2A9I2_BRAOL); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00010027g0002.1 protein AED:0.01 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|653; (*GB) gi|224094905|ref|XP_002310286.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=1e-65) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT1G35710.1 (e_value=7e-67) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120;; (*ITAG) Solyc05g006670.1.1 (e_value=1e-107) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:1339459-1341369 transcript_region:SL2.40ch05:1339459..1341369- go_terms:GO:0019903,GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0019903,GO:0004675 NbS00010027g0018.1 protein AED:0.39 eAED:0.54 QI:9|0|0|1|0|0|2|0|130; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010027g0019.1 protein AED:0.40 eAED:0.46 QI:0|0|0|1|0|0|4|0|116 NbS00036825g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0.5|1|1|1|2|266|270; (*GB) gi|356522438|ref|XP_003529853.1| (e_value=5e-63) PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max];; (*SWP) sp|Q4KLT0|RN217_XENLA (e_value=9e-12) Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1;; (*TAIR) AT3G14250.1 (e_value=1e-53) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc03g115920.2.1 (e_value=2e-124) genomic_reference:SL2.40ch03 gene_region:59553261-59554223 transcript_region:SL2.40ch03:59553261..59554223- go_terms:GO:0008270 functional_description:"Zinc finger protein-like protein (AHRD V1 **-- Q1PEQ5_ARATH); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00036825g0002.1 protein AED:0.27 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|178; (*GB) gi|225452853|ref|XP_002283723.1| (e_value=1e-24) PREDICTED: probable calcium-binding protein CML45 [Vitis vinifera];; (*SWP) sp|Q9MBG5|CML30_ARATH (e_value=5e-20) Probable calcium-binding protein CML30 OS=Arabidopsis thaliana GN=CML30 PE=2 SV=1;; (*TAIR) AT3G29000.1 (e_value=3e-21) | Symbols: | Calcium-binding EF-hand family protein | chr3:11005791-11006375 FORWARD LENGTH=194;; (*ITAG) Solyc03g115930.1.1 (e_value=1e-49) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59555528-59556136 transcript_region:SL2.40ch03:59555528..59556136- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 *-*- B6TXW9_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00000264g0012.1 protein AED:0.17 eAED:0.17 QI:602|1|1|1|1|1|2|225|96; (*GB) gi|255543032|ref|XP_002512579.1| (e_value=1e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G57540.3 (e_value=4e-58) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21310478-21311215 REVERSE LENGTH=103;; (*ITAG) Solyc03g098120.2.1 (e_value=4e-62) genomic_reference:SL2.40ch03 gene_region:53901216-53903729 transcript_region:SL2.40ch03:53901216..53903729- functional_description:"Unknown Protein (AHRD V1)"; NbS00000264g0017.1 protein AED:0.22 eAED:0.22 QI:0|0.5|0.8|1|0.5|0.6|5|354|408; (*GB) gi|224082832|ref|XP_002306858.1| (e_value=6e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M1T1|SETH3_ARATH (e_value=1e-167) Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1;; (*TAIR) AT3G54690.1 (e_value=8e-169) | Symbols: | Sugar isomerase (SIS) family protein | chr3:20246586-20247810 FORWARD LENGTH=350;; (*ITAG) Solyc03g098140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53914820-53918720 transcript_region:SL2.40ch03:53914820..53918720- go_terms:GO:0005975 functional_description:"Arabinose-5-phosphate isomerase (AHRD V1 ***- B0TYU5_FRAP2); contains Interpro domain(s) IPR004800 KpsF/GutQ "; GO:0005975 NbS00000264g0015.1 protein AED:0.34 eAED:0.34 QI:127|0.90|0.83|0.91|0.81|0.91|12|0|361; (*GB) gi|359495113|ref|XP_003634913.1| (e_value=2e-105) PREDICTED: uncharacterized protein LOC100243690 isoform 2 [Vitis vinifera];; (*TAIR) AT1G73470.3 (e_value=2e-94) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. | chr1:27625208-27627604 FORWARD LENGTH=357;; (*ITAG) Solyc03g098110.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:53890467-53900661 transcript_region:SL2.40ch03:53890467..53900661- functional_description:"Genome sequencing data contig C315 (AHRD V1 ***- A8YHW9_MICAE)"; NbS00000264g0014.1 protein AED:0.18 eAED:0.43 QI:0|0|0|0.75|0|0.25|4|0|153; (*ITAG) Solyc03g098090.1.1 (e_value=9e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:53885174-53886087 transcript_region:SL2.40ch03:53885174..53886087- functional_description:"UPF0497 membrane protein 17 (AHRD V1 ***- U497H_RICCO); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00012812g0001.1 protein AED:0.01 eAED:0.01 QI:67|1|1|1|1|1|2|387|160; (*GB) gi|372995481|gb|AEY11296.1| (e_value=4e-96) pathogenesis-related protein PR10 [Nicotiana tabacum];; (*SWP) sp|P17642|PRS2_SOLTU (e_value=2e-86) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*TAIR) AT1G24020.2 (e_value=2e-12) | Symbols: MLP423 | MLP-like protein 423 | chr1:8500653-8501458 REVERSE LENGTH=155;; (*ITAG) Solyc09g091000.2.1 (e_value=4e-88) genomic_reference:SL2.40ch09 gene_region:65708207-65709306 transcript_region:SL2.40ch09:65708207..65709306+ go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q84LA7_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00012812g0011.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.25|1|1|4|0|164; (*ITAG) Solyc09g090710.2.1 (e_value=2e-33) genomic_reference:SL2.40ch09 gene_region:65497039-65498583 transcript_region:SL2.40ch09:65497039..65498583+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012812g0013.1 protein AED:0.07 eAED:0.07 QI:0|0|0.5|1|1|1|2|294|145; (*GB) gi|372995481|gb|AEY11296.1| (e_value=1e-91) pathogenesis-related protein PR10 [Nicotiana tabacum];; (*SWP) sp|P17642|PRS2_SOLTU (e_value=1e-77) Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1;; (*ITAG) Solyc09g090970.2.1 (e_value=2e-83) genomic_reference:SL2.40ch09 gene_region:65693954-65695375 transcript_region:SL2.40ch09:65693954..65695375- go_terms:GO:0009607 functional_description:"Major allergen Mal d 1 (AHRD V1 ***- Q84LA7_MALDO); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00012812g0002.1 protein AED:0.18 eAED:0.19 QI:226|1|0.5|1|0|0|2|0|529; (*GB) gi|350538647|ref|NP_001233841.1| (e_value=0.0) succinic semialdehyde dehydrogenase [Solanum lycopersicum];; (*SWP) sp|Q9SAK4|SSDH_ARATH (e_value=0.0) Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2;; (*TAIR) AT1G79440.1 (e_value=0.0) | Symbols: ALDH5F1, SSADH1, SSADH | aldehyde dehydrogenase 5F1 | chr1:29882525-29887275 REVERSE LENGTH=528;; (*ITAG) Solyc09g090700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:65491141-65492709 transcript_region:SL2.40ch09:65491141..65492709- go_terms:GO:0004777 functional_description:"Succinate semialdehyde dehydrogenase (AHRD V1 **** B6TPI6_MAIZE); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004777 NbC25382286g0002.1 protein AED:0.27 eAED:0.27 QI:0|1|0|1|1|1|2|0|150; (*GB) gi|224114147|ref|XP_002316680.1| (e_value=9e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXB8|Y1133_ARATH (e_value=2e-38) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330 OS=Arabidopsis thaliana GN=At1g11330 PE=1 SV=3;; (*TAIR) AT1G11330.1 (e_value=1e-39) | Symbols: | S-locus lectin protein kinase family protein | chr1:3810372-3813416 FORWARD LENGTH=840;; (*ITAG) Solyc04g058110.2.1 (e_value=4e-67) genomic_reference:SL2.40ch04 gene_region:54372770-54376223 transcript_region:SL2.40ch04:54372770..54376223+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00036753g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|486; (*GB) gi|298569772|gb|ADI87414.1| (e_value=0.0) fructokinase-like protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q9M1B9|SCRK4_ARATH (e_value=5e-57) Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1;; (*TAIR) AT3G54090.1 (e_value=0.0) | Symbols: FLN1 | fructokinase-like 1 | chr3:20028145-20029835 FORWARD LENGTH=471;; (*ITAG) Solyc09g011850.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5125301-5128168 transcript_region:SL2.40ch09:5125301..5128168+ functional_description:"Fructokinase-like protein 1 (AHRD V1 ***- D9IWP2_SOLTU); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; NbS00036753g0006.1 protein AED:0.12 eAED:0.12 QI:0|1|0.87|1|1|1|8|392|689; (*GB) gi|359481698|ref|XP_002277149.2| (e_value=0.0) PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=7e-89) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G37980.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr2:15894162-15897452 REVERSE LENGTH=638;; (*ITAG) Solyc09g011860.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5131897-5135504 transcript_region:SL2.40ch09:5131897..5135504- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00006767g0006.1 protein AED:0.05 eAED:0.05 QI:331|0.90|0.91|1|0.54|0.66|12|332|1174; (*GB) gi|359483388|ref|XP_002264179.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250303 [Vitis vinifera];; (*SWP) sp|Q63679|KDM3A_RAT (e_value=1e-61) Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1;; (*TAIR) AT1G11950.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr1:4034747-4038310 REVERSE LENGTH=875;; (*ITAG) Solyc02g081010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39647766-39651648 transcript_region:SL2.40ch02:39647766..39651648- go_terms:GO:0003700 functional_description:"Transcription factor jumonji domain-containing protein (AHRD V1 **-* D7KN75_ARALY); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00001828g0006.1 protein AED:0.12 eAED:0.12 QI:0|0|0.25|1|0|0|4|0|215; (*GB) gi|133712623|gb|ABO37118.1| (e_value=1e-107) cuticular water permeability [Solanum habrochaites];; (*SWP) sp|P54797|T10_MOUSE (e_value=1e-19) Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2 SV=1;; (*TAIR) AT4G38260.1 (e_value=3e-61) | Symbols: | Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275;; (*ITAG) Solyc04g082540.1.1 (e_value=9e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63777368-63779533 transcript_region:SL2.40ch04:63777368..63779533+ go_terms:GO:0005515 functional_description:"Ser/Thr-rich protein T10 in DGCR region (AHRD V1 **-- B6TDB2_MAIZE); contains Interpro domain(s) IPR008551 Protein of unknown function DUF833 "; GO:0005515 NbS00023328g0008.1 protein AED:0.47 eAED:0.48 QI:0|0|0|0.4|0.5|0.2|5|0|308; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-41) hypothetical protein [Nicotiana tabacum]; NbS00023328g0009.1 protein AED:0.33 eAED:0.53 QI:0|0.2|0.16|1|0|0|6|0|168; (*ITAG) Solyc01g079880.2.1 (e_value=6e-15) genomic_reference:SL2.40ch01 gene_region:71536915-71541059 transcript_region:SL2.40ch01:71536915..71541059- functional_description:"Asparagine synthetase (AHRD V1 *--- Q9ZST6_ARATH)"; NbS00051581g0007.1 protein AED:0.17 eAED:0.17 QI:365|0.75|0.8|1|0.5|0.2|5|496|360; (*GB) gi|77416925|gb|ABA81858.1| (e_value=0.0) brittle 1 protein-like [Solanum tuberosum];; (*SWP) sp|P29518|BT1_MAIZE (e_value=2e-92) Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1;; (*TAIR) AT4G32400.1 (e_value=4e-134) | Symbols: EMB104, SHS1, EMB42, ATBT1 | Mitochondrial substrate carrier family protein | chr4:15638686-15640238 FORWARD LENGTH=392;; (*ITAG) Solyc08g061090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43863377-43867169 transcript_region:SL2.40ch08:43863377..43867169+ go_terms:GO:0005310 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MYP8_MICPS); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0005310 NbS00051581g0002.1 protein AED:0.08 eAED:0.08 QI:0|0.92|0.71|1|1|1|14|0|1124; (*GB) gi|359476121|ref|XP_002282575.2| (e_value=0.0) PREDICTED: LOW QUALITY PROTEIN: cellulose synthase A catalytic subunit 1 [UDP-forming]-like [Vitis vinifera];; (*SWP) sp|O48946|CESA1_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1;; (*TAIR) AT4G32410.1 (e_value=0.0) | Symbols: CESA1, RSW1, AtCESA1 | cellulose synthase 1 | chr4:15641009-15646388 REVERSE LENGTH=1081;; (*ITAG) Solyc08g061100.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:43867693-43876166 transcript_region:SL2.40ch08:43867693..43876166- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IKV7_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00059561g0001.1 protein AED:0.18 eAED:0.19 QI:1226|0.8|0.81|1|0.4|0.36|11|0|261; (*GB) gi|356504360|ref|XP_003520964.1| (e_value=2e-87) PREDICTED: serine carboxypeptidase-like 19-like [Glycine max];; (*SWP) sp|O64810|SCP10_ARATH (e_value=2e-72) Serine carboxypeptidase-like 10 OS=Arabidopsis thaliana GN=SCPL10 PE=2 SV=1;; (*TAIR) AT2G23000.1 (e_value=2e-73) | Symbols: scpl10 | serine carboxypeptidase-like 10 | chr2:9792284-9795741 FORWARD LENGTH=437;; (*ITAG) Solyc04g077650.2.1 (e_value=1e-134) genomic_reference:SL2.40ch04 gene_region:60182048-60186491 transcript_region:SL2.40ch04:60182048..60186491+ go_terms:GO:0016754 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0016754 NbS00003913g0005.1 protein AED:0.39 eAED:0.39 QI:0|0.55|0.5|0.9|1|1|10|0|557; (*GB) gi|224131388|ref|XP_002321072.1| (e_value=2e-167) predicted protein [Populus trichocarpa];; (*TAIR) AT3G58640.2 (e_value=5e-143) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc07g055130.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60575268-60584663 transcript_region:SL2.40ch07:60575268..60584663- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00018472g0003.1 protein AED:0.12 eAED:0.12 QI:481|1|1|1|0.85|0.87|8|19|448; (*GB) gi|224108635|ref|XP_002314917.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69040.1 (e_value=0.0) | Symbols: ACR4 | ACT domain repeat 4 | chr1:25958196-25960079 FORWARD LENGTH=451;; (*ITAG) Solyc01g010150.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4938915-4942653 transcript_region:SL2.40ch01:4938915..4942653+ go_terms:GO:0008152 functional_description:"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic (AHRD V1 *--- UP12_ORYSJ); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00044252g0001.1 protein AED:0.10 eAED:0.10 QI:94|1|1|1|0.8|0.66|6|112|385; (*GB) gi|225424649|ref|XP_002285512.1| (e_value=0.0) PREDICTED: GDSL esterase/lipase At3g26430 [Vitis vinifera];; (*SWP) sp|Q9LIN2|GDL53_ARATH (e_value=3e-176) GDSL esterase/lipase At3g26430 OS=Arabidopsis thaliana GN=At3g26430 PE=2 SV=1;; (*TAIR) AT3G26430.1 (e_value=2e-177) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:9674419-9675889 FORWARD LENGTH=380;; (*ITAG) Solyc05g013690.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6985649-6988693 transcript_region:SL2.40ch05:6985649..6988693- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At3g26430 (AHRD V1 ***- GDL53_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00011007g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|0.33|0.25|4|62|247; (*GB) gi|1717752|sp|P50162.1|TRN1_DATST (e_value=1e-144) RecName: Full=Tropinone reductase 1; AltName: Full=Tropine dehydrogenase; AltName: Full=Tropinone reductase I; Short=TR-I;; (*SWP) sp|P50162|TRN1_DATST (e_value=4e-146) Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1;; (*TAIR) AT2G29260.1 (e_value=3e-90) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:12582523-12583954 FORWARD LENGTH=322;; (*ITAG) Solyc10g081560.1.1 (e_value=1e-140) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61927585-61930314 transcript_region:SL2.40ch10:61927585..61930314- go_terms:GO:0008152,GO:0055114 functional_description:"Tropinone reductase I (AHRD V1 **-- Q9AR59_SOLTU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00011007g0112.1 protein AED:0.03 eAED:0.03 QI:0|1|0.9|1|1|1|10|430|528 NbS00011007g0117.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.6|0.9|0.66|0.6|10|274|254 NbS00011007g0118.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.33|1|0.5|0.66|3|0|253 NbS00011007g0119.1 protein AED:0.10 eAED:0.10 QI:52|1|1|1|1|1|11|282|765 NbS00011217g0001.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|1|1|2|0|454; (*GB) gi|359497760|ref|XP_003635632.1| (e_value=5e-160) PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=2e-45) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT4G16490.1 (e_value=7e-128) | Symbols: | ARM repeat superfamily protein | chr4:9293891-9295530 REVERSE LENGTH=472;; (*ITAG) Solyc04g014810.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:5050800-5053600 transcript_region:SL2.40ch04:5050800..5053600+ go_terms:GO:0005488 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00002101g0105.1 protein AED:0.00 eAED:0.00 QI:274|1|1|1|1|1|2|401|194 NbS00002101g0101.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|287 NbS00019598g0004.1 protein AED:0.02 eAED:0.06 QI:622|1|0.5|1|0|0|2|1432|74 NbS00019598g0005.1 protein AED:0.01 eAED:0.01 QI:734|1|0.66|1|1|1|3|0|360; (*GB) gi|209978913|gb|ACJ04728.1| (e_value=0.0) WRKY transcription factor-30 [Capsicum annuum];; (*SWP) sp|Q9SUP6|WRK53_ARATH (e_value=6e-59) Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1;; (*TAIR) AT4G23810.1 (e_value=5e-60) | Symbols: WRKY53, ATWRKY53 | WRKY family transcription factor | chr4:12392666-12393739 REVERSE LENGTH=324;; (*ITAG) Solyc08g008280.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2704613-2706561 transcript_region:SL2.40ch08:2704613..2706561- go_terms:GO:0003700,GO:0019900 functional_description:"WRKY transcription factor-30 (AHRD V1 **** B6VB04_CAPAN); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0003700,GO:0019900 NbS00028075g0005.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|0|368; (*GB) gi|359483397|ref|XP_002263520.2| (e_value=1e-135) PREDICTED: S-type anion channel SLAH1 [Vitis vinifera];; (*SWP) sp|Q5E930|SLAH1_ARATH (e_value=2e-126) S-type anion channel SLAH1 OS=Arabidopsis thaliana GN=SLAH1 PE=2 SV=1;; (*TAIR) AT1G62280.1 (e_value=1e-127) | Symbols: SLAH1 | SLAC1 homologue 1 | chr1:23007309-23008540 REVERSE LENGTH=385;; (*ITAG) Solyc03g031590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:8352430-8355034 transcript_region:SL2.40ch03:8352430..8355034- go_terms:GO:0016021 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 ***- D7KUS7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0016021 NbS00053278g0001.1 protein AED:0.10 eAED:0.10 QI:0|0.33|0.25|0.75|1|1|4|0|619; (*GB) gi|57282316|emb|CAD43284.1| (e_value=0.0) bromodomain-containing RNA-binding protein 1 [Nicotiana benthamiana];; (*SWP) sp|Q7Y214|GTE7_ARATH (e_value=7e-97) Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1;; (*TAIR) AT5G65630.1 (e_value=5e-98) | Symbols: GTE7 | global transcription factor group E7 | chr5:26226311-26228257 REVERSE LENGTH=590;; (*ITAG) Solyc01g106280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85985054-85987923 transcript_region:SL2.40ch01:85985054..85987923- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *--* D7KG11_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00036904g0008.1 protein AED:0.18 eAED:0.18 QI:639|0.90|0.91|1|0.81|0.66|12|501|501; (*GB) gi|359491383|ref|XP_002273274.2| (e_value=6e-150) PREDICTED: transcription factor BIM1-like [Vitis vinifera];; (*SWP) sp|Q9LEZ3|BIM1_ARATH (e_value=1e-78) Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2;; (*TAIR) AT5G08130.4 (e_value=9e-80) | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2609571 REVERSE LENGTH=529;; (*ITAG) Solyc06g069370.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39510571-39515377 transcript_region:SL2.40ch06:39510571..39515377+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor protein (AHRD V1 *-** Q4H2R4_CIOIN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005515,GO:0003700 NbS00005421g0007.1 protein AED:0.04 eAED:0.05 QI:0|1|0|1|1|1|2|0|568; (*GB) gi|302127802|emb|CBP07442.1| (e_value=0.0) sterol reductase [Solanum tuberosum];; (*SWP) sp|Q39085|DIM_ARATH (e_value=0.0) Delta(24)-sterol reductase OS=Arabidopsis thaliana GN=DIM PE=1 SV=2;; (*TAIR) AT3G19820.3 (e_value=0.0) | Symbols: DWF1 | cell elongation protein / DWARF1 / DIMINUTO (DIM) | chr3:6879835-6881616 REVERSE LENGTH=561;; (*ITAG) Solyc02g069490.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33935481-33937599 transcript_region:SL2.40ch02:33935481..33937599- go_terms:GO:0005516 functional_description:"FAD linked oxidase domain protein (AHRD V1 **-- D1VPW7_9ACTO); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0005516 NbS00005421g0010.1 protein AED:0.13 eAED:0.14 QI:152|0.5|0.33|1|0.5|0.33|3|0|769; (*GB) gi|359495321|ref|XP_002271188.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266793 [Vitis vinifera];; (*TAIR) AT5G60710.1 (e_value=3e-148) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc02g069470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33920445-33924829 transcript_region:SL2.40ch02:33920445..33924829- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00025751g0009.1 protein AED:0.12 eAED:0.12 QI:0|1|0.93|1|0.5|0.53|15|1317|444; (*GB) gi|296082805|emb|CBI21810.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q39199|RECAC_ARATH (e_value=0.0) DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana GN=RECA PE=2 SV=1;; (*TAIR) AT1G79050.1 (e_value=0.0) | Symbols: | recA DNA recombination family protein | chr1:29737084-29740140 REVERSE LENGTH=439;; (*ITAG) Solyc07g066320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65011318-65015928 transcript_region:SL2.40ch07:65011318..65015928- go_terms:GO:0003677 functional_description:"Protein recA (AHRD V1 ***- B6T788_MAIZE); contains Interpro domain(s) IPR013765 RecA "; GO:0003677 NbS00025751g0007.1 protein AED:0.51 eAED:0.51 QI:0|0.66|0.25|0.75|1|1|4|0|82; (*GB) gi|3914472|sp|Q40519.1|PSBR_TOBAC (e_value=2e-38) RecName: Full=Photosystem II 10 kDa polypeptide, chloroplastic; Short=PII10; Flags: Precursor;; (*SWP) sp|Q40519|PSBR_TOBAC (e_value=4e-40) Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1;; (*TAIR) AT1G79040.1 (e_value=2e-32) | Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140;; (*ITAG) Solyc07g066310.2.1 (e_value=1e-40) genomic_reference:SL2.40ch07 gene_region:65009418-65011119 transcript_region:SL2.40ch07:65009418..65011119+ go_terms:GO:0042651 functional_description:"photosystem II polypeptide (AHRD V1 ***- Q6V7X5_TRIPR); contains Interpro domain(s) IPR006814 Photosystem II protein PsbR "; GO:0042651 NbS00025751g0008.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.66|0|0|3|0|82 NbS00003775g0004.1 protein AED:0.20 eAED:0.27 QI:205|0.57|0.75|1|0.85|0.75|8|433|509; (*GB) gi|225435758|ref|XP_002285721.1| (e_value=0.0) PREDICTED: tubulin alpha-1 chain [Vitis vinifera];; (*SWP) sp|Q9ZRJ4|TBA_CHLVU (e_value=0.0) Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1;; (*TAIR) AT1G64740.1 (e_value=0.0) | Symbols: TUA1 | alpha-1 tubulin | chr1:24050114-24052296 FORWARD LENGTH=450;; (*ITAG) Solyc02g087880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44730447-44732299 transcript_region:SL2.40ch02:44730447..44732299+ go_terms:GO:0046982 functional_description:"Tubulin alpha-7 chain (AHRD V1 ***- B9IJV8_POPTR); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982 NbS00009670g0001.1 protein AED:0.14 eAED:0.14 QI:0|0|0|0.5|1|1|2|0|140; (*GB) gi|356527113|ref|XP_003532158.1| (e_value=2e-48) PREDICTED: 40S ribosomal protein S8-like [Glycine max];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=7e-50) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G20290.1 (e_value=4e-50) | Symbols: | Ribosomal protein S8e family protein | chr5:6851695-6853012 REVERSE LENGTH=222;; (*ITAG) Solyc06g083180.2.1 (e_value=3e-52) genomic_reference:SL2.40ch06 gene_region:45001450-45004243 transcript_region:SL2.40ch06:45001450..45004243- go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q0E158_ORYSJ); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbC23616463g0001.1 protein AED:0.24 eAED:0.24 QI:0|-1|0|1|-1|1|1|0|69; (*GB) gi|255548167|ref|XP_002515140.1| (e_value=8e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G62010.1 (e_value=5e-25) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | chr3:22964945-22971149 FORWARD LENGTH=1254;; (*ITAG) Solyc01g068610.2.1 (e_value=9e-37) genomic_reference:SL2.40ch01 gene_region:70202881-70220200 transcript_region:SL2.40ch01:70202881..70220200+ functional_description:"Metal ion binding protein (AHRD V1 **-- D7LSR9_ARALY)"; NbS00018791g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.87|0.66|1|1|1|9|0|721; (*GB) gi|350538147|ref|NP_001234329.1| (e_value=0.0) ferric-chelate reductase [Solanum lycopersicum];; (*SWP) sp|P92949|FRO2_ARATH (e_value=0.0) Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2;; (*TAIR) AT1G01580.1 (e_value=0.0) | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction oxidase 2 | chr1:209395-212810 FORWARD LENGTH=725;; (*ITAG) Solyc01g094910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78075479-78078751 transcript_region:SL2.40ch01:78075479..78078751- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0000293 NbS00018791g0002.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|1|1|2|0|484; (*GB) gi|225454346|ref|XP_002278060.1| (e_value=7e-156) PREDICTED: probable receptor-like protein kinase At5g24010-like [Vitis vinifera];; (*SWP) sp|Q9FLW0|Y5241_ARATH (e_value=5e-83) Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1;; (*TAIR) AT4G00300.2 (e_value=2e-127) | Symbols: | fringe-related protein | chr4:128690-130126 FORWARD LENGTH=478;; (*ITAG) Solyc01g094920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78086434-78088188 transcript_region:SL2.40ch01:78086434..78088188- functional_description:"Receptor-like kinase (AHRD V1 ***- C6ZRN8_SOYBN)"; NbS00000826g0007.1 protein AED:0.17 eAED:0.17 QI:45|1|1|1|1|1|2|258|497; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=0.0) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26300.1 (e_value=8e-121) | Symbols: CYP71B34 | cytochrome P450, family 71, subfamily B, polypeptide 34 | chr3:9639199-9640866 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000826g0010.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.33|3|0|429; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=0.0) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=0.0) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT3G26310.1 (e_value=3e-111) | Symbols: CYP71B35 | cytochrome P450, family 71, subfamily B, polypeptide 35 | chr3:9641089-9642779 REVERSE LENGTH=500;; (*ITAG) Solyc01g008640.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2707156-2708925 transcript_region:SL2.40ch01:2707156..2708925+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00041461g0002.1 protein AED:0.21 eAED:0.28 QI:0|0.25|0|1|0.25|0.4|5|0|257; (*GB) gi|242074716|ref|XP_002447294.1| (e_value=4e-76) hypothetical protein SORBIDRAFT_06g032230 [Sorghum bicolor];; (*SWP) sp|Q39513|FATB_CUPHO (e_value=2e-20) Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1;; (*TAIR) AT1G08510.1 (e_value=5e-26) | Symbols: FATB | fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412;; (*ITAG) Solyc05g008570.1.1 (e_value=2e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2888538-2891808 transcript_region:SL2.40ch05:2888538..2891808+ go_terms:GO:0016297,GO:0000036 functional_description:"Acyl ACP-thioesterase (AHRD V1 **** A9P5P1_ARAHY); contains Interpro domain(s) IPR002864 Acyl-ACP thioesterase "; GO:0016297,GO:0000036 NbS00049507g0005.1 protein AED:0.23 eAED:0.24 QI:0|0.75|0.55|1|0.75|0.66|9|0|734; (*GB) gi|13620228|emb|CAC36403.1| (e_value=0.0) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q8RXR2|CLCF_ARATH (e_value=0.0) Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2;; (*TAIR) AT1G55620.2 (e_value=0.0) | Symbols: CLC-F, ATCLC-F | chloride channel F | chr1:20787338-20790990 REVERSE LENGTH=781;; (*ITAG) Solyc10g005690.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:557038-564501 transcript_region:SL2.40ch10:557038..564501- go_terms:GO:0005515 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0005515 NbS00018581g0005.1 protein AED:0.33 eAED:0.33 QI:174|0.71|0.62|1|0.42|0.87|8|0|289; (*GB) gi|359494005|ref|XP_003634707.1| (e_value=5e-72) PREDICTED: DDRGK domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q94C53|DDRGK_ARATH (e_value=2e-66) DDRGK domain-containing protein 1 OS=Arabidopsis thaliana GN=At4g27120 PE=2 SV=1;; (*TAIR) AT4G27120.2 (e_value=1e-67) | Symbols: | CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 14775 Blast hits to 8764 proteins in 778 species: Archae - 29; Bacteria - 1878; Metazoa - 5164; Fungi - 1447; Plants - 582; Viruses - 164; Other Eukaryotes - 5511 (source: NCBI BLink). | chr4:13602210-13604227 REVERSE LENGTH=298;; (*ITAG) Solyc10g006460.2.1 (e_value=3e-85) genomic_reference:SL2.40ch10 gene_region:1062715-1066808 transcript_region:SL2.40ch10:1062715..1066808+ functional_description:"DDRGK domain-containing protein 1 (AHRD V1 *-*- DDRGK_ARATH); contains Interpro domain(s) IPR019153 DDRGK domain "; NbS00042146g0004.1 protein AED:0.02 eAED:0.02 QI:0|1|0|1|1|1|2|0|81; (*ITAG) Solyc06g084170.2.1 (e_value=3e-29) genomic_reference:SL2.40ch06 gene_region:45670468-45671823 transcript_region:SL2.40ch06:45670468..45671823+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042146g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|74; (*GB) gi|6626173|gb|AAF19524.1|AF213464_1 (e_value=5e-40) cysteine-rich protein [Nicotiana tabacum];; (*SWP) sp|O24172|ALL6_OLEEU (e_value=9e-14) Pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1;; (*ITAG) Solyc09g065450.2.1 (e_value=2e-21) genomic_reference:SL2.40ch09 gene_region:59150782-59151825 transcript_region:SL2.40ch09:59150782..59151825- functional_description:"Cysteine-rich protein (AHRD V1 ***- Q9SDN7_TOBAC); contains Interpro domain(s) IPR015333 Pollen allergen ole e 6 "; NbS00042146g0002.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc06g084170.2.1 (e_value=3e-28) genomic_reference:SL2.40ch06 gene_region:45670468-45671823 transcript_region:SL2.40ch06:45670468..45671823+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002591g0012.1 protein AED:0.16 eAED:0.16 QI:0|0.33|0|1|0.33|0|4|0|829; (*GB) gi|225452990|ref|XP_002263011.1| (e_value=1e-171) PREDICTED: uncharacterized protein LOC100258654 [Vitis vinifera];; (*TAIR) AT1G08800.2 (e_value=5e-51) | Symbols: | Protein of unknown function, DUF593 | chr1:2813578-2817078 REVERSE LENGTH=1113;; (*ITAG) Solyc01g097040.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79776168-79780478 transcript_region:SL2.40ch01:79776168..79780478+ functional_description:"IFA-binding protein-like (AHRD V1 *-*- Q5ZC01_ORYSJ); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00002591g0010.1 protein AED:0.04 eAED:0.05 QI:51|0|0|1|0|0|2|0|436; (*GB) gi|357483569|ref|XP_003612071.1| (e_value=5e-152) Cell division protease ftsH-like protein [Medicago truncatula];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=5e-22) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT5G17760.1 (e_value=7e-141) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:5860591-5862301 REVERSE LENGTH=505;; (*ITAG) Solyc02g084910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42543739-42545282 transcript_region:SL2.40ch02:42543739..42545282- go_terms:GO:0016887 functional_description:"26S protease regulatory subunit 6B homolog (AHRD V1 *--- PRS6B_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00002591g0011.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|2|0|131; (*GB) gi|225458380|ref|XP_002281805.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100262482 [Vitis vinifera];; (*TAIR) AT5G42610.1 (e_value=5e-19) | Symbols: | Protein of unknown function (DUF607) | chr5:17062507-17063934 FORWARD LENGTH=293;; (*ITAG) Solyc04g079910.2.1 (e_value=3e-49) genomic_reference:SL2.40ch04 gene_region:61818808-61820555 transcript_region:SL2.40ch04:61818808..61820555- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00027944g0001.1 protein AED:0.23 eAED:0.23 QI:0|1|0.5|1|0|0|2|159|67; (*ITAG) Solyc11g016990.1.1 (e_value=1e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7660095-7671231 transcript_region:SL2.40ch11:7660095..7671231+ go_terms:GO:0016311,GO:0006470 functional_description:"Receptor-type tyrosine-protein phosphatase S (AHRD V1 ***- B6TAK5_MAIZE); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0016311,GO:0006470 NbS00027944g0006.1 protein AED:0.26 eAED:0.26 QI:204|0.83|1|1|0.33|0.14|7|509|156; (*GB) gi|255586813|ref|XP_002534020.1| (e_value=2e-65) protein-tyrosine phosphatase 1, plants, putative [Ricinus communis];; (*SWP) sp|O82656|PTP1_ARATH (e_value=5e-64) Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1;; (*TAIR) AT1G71860.3 (e_value=4e-65) | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase 1 | chr1:27026866-27028675 FORWARD LENGTH=340;; (*ITAG) Solyc11g016990.1.1 (e_value=2e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7660095-7671231 transcript_region:SL2.40ch11:7660095..7671231+ go_terms:GO:0016311,GO:0006470 functional_description:"Receptor-type tyrosine-protein phosphatase S (AHRD V1 ***- B6TAK5_MAIZE); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0016311,GO:0006470 NbS00035060g0001.1 protein AED:0.39 eAED:0.39 QI:65|0.72|0.91|1|0.90|0.83|12|312|334; (*GB) gi|363807566|ref|NP_001242661.1| (e_value=1e-173) glycogen synthase kinase-3 [Glycine max];; (*SWP) sp|Q40518|MSK1_TOBAC (e_value=4e-170) Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1;; (*TAIR) AT1G57870.2 (e_value=4e-130) | Symbols: ATSK42, SK42 | shaggy-like kinase 42 | chr1:21431358-21434877 REVERSE LENGTH=420;; (*ITAG) Solyc02g086670.2.1 (e_value=8e-150) genomic_reference:SL2.40ch02 gene_region:43898043-43905200 transcript_region:SL2.40ch02:43898043..43905200- go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00007254g0004.1 protein AED:0.04 eAED:0.04 QI:0|0|0|0.66|1|1|3|0|274; (*GB) gi|225457413|ref|XP_002284935.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100255290 [Vitis vinifera];; (*TAIR) AT5G62440.1 (e_value=4e-36) | Symbols: | Protein of unknown function (DUF3223) | chr5:25072620-25073917 REVERSE LENGTH=202;; (*ITAG) Solyc06g069770.2.1 (e_value=4e-76) genomic_reference:SL2.40ch06 gene_region:39839918-39842331 transcript_region:SL2.40ch06:39839918..39842331- functional_description:"DNA-directed RNA polymerase (AHRD V1 *--- B9GKP9_POPTR)"; NbS00007254g0002.1 protein AED:0.19 eAED:0.20 QI:0|1|0|1|1|1|2|0|579; (*GB) gi|229619540|dbj|BAH58100.1| (e_value=1e-159) Dof zinc finger protein [Ipomoea batatas];; (*SWP) sp|Q8LFV3|DOF33_ARATH (e_value=1e-71) Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2;; (*TAIR) AT3G47500.1 (e_value=9e-73) | Symbols: CDF3 | cycling DOF factor 3 | chr3:17504276-17505964 REVERSE LENGTH=448;; (*ITAG) Solyc06g069760.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39832926-39835533 transcript_region:SL2.40ch06:39832926..39835533- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00057113g0001.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|1|1|2|0|209; (*GB) gi|356539294|ref|XP_003538134.1| (e_value=8e-86) PREDICTED: cytochrome P450 94A2-like [Glycine max];; (*SWP) sp|P85191|CP450_HELAN (e_value=2e-64) Cytochrome P450 (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT2G27690.1 (e_value=2e-75) | Symbols: CYP94C1 | cytochrome P450, family 94, subfamily C, polypeptide 1 | chr2:11809373-11810860 FORWARD LENGTH=495;; (*ITAG) Solyc06g074420.1.1 (e_value=5e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42443320-42444777 transcript_region:SL2.40ch06:42443320..42444777+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010932g0001.1 protein AED:0.09 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|659; (*GB) gi|224139012|ref|XP_002322958.1| (e_value=1e-176) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SS80|U503A_ARATH (e_value=2e-83) UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1;; (*TAIR) AT3G09070.1 (e_value=2e-84) | Symbols: | Protein of unknown function (DUF740) | chr3:2768880-2770937 REVERSE LENGTH=685;; (*ITAG) Solyc09g014160.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:5596207-5598186 transcript_region:SL2.40ch09:5596207..5598186+ functional_description:"UPF0503 protein At3g09070, chloroplastic (AHRD V1 ***- U503A_ARATH); contains Interpro domain(s) IPR008004 Protein of unknown function DUF740 "; NbS00045179g0002.1 protein AED:0.23 eAED:0.24 QI:848|0|0.5|1|0|0.5|2|0|112; (*GB) gi|2493046|sp|Q40089.1|ATP4_IPOBA (e_value=6e-69) RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor;; (*SWP) sp|Q40089|ATP4_IPOBA (e_value=2e-70) ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G47030.1 (e_value=1e-61) | Symbols: | ATPase, F1 complex, delta/epsilon subunit | chr5:19090384-19092034 FORWARD LENGTH=203;; (*ITAG) Solyc03g095190.2.1 (e_value=7e-73) genomic_reference:SL2.40ch03 gene_region:49598390-49602085 transcript_region:SL2.40ch03:49598390..49602085- go_terms:GO:0008270,GO:0016887 functional_description:"ATP synthase epsilon chain (AHRD V1 ***- A3UHR9_9RHOB); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0008270,GO:0016887 NbS00045179g0001.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|2493046|sp|Q40089.1|ATP4_IPOBA (e_value=6e-46) RecName: Full=ATP synthase subunit delta', mitochondrial; AltName: Full=F-ATPase delta' subunit; Flags: Precursor;; (*SWP) sp|Q40089|ATP4_IPOBA (e_value=2e-47) ATP synthase subunit delta', mitochondrial OS=Ipomoea batatas PE=1 SV=1;; (*TAIR) AT5G47030.1 (e_value=1e-32) | Symbols: | ATPase, F1 complex, delta/epsilon subunit | chr5:19090384-19092034 FORWARD LENGTH=203;; (*ITAG) Solyc03g095190.2.1 (e_value=5e-45) genomic_reference:SL2.40ch03 gene_region:49598390-49602085 transcript_region:SL2.40ch03:49598390..49602085- go_terms:GO:0008270,GO:0016887 functional_description:"ATP synthase epsilon chain (AHRD V1 ***- A3UHR9_9RHOB); contains Interpro domain(s) IPR001469 ATPase, F1 complex, delta/epsilon subunit "; GO:0008270,GO:0016887 NbS00045179g0016.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0|0.66|0|0.33|3|0|193; (*GB) gi|225454954|ref|XP_002280495.1| (e_value=2e-60) PREDICTED: putative pterin-4-alpha-carbinolamine dehydratase [Vitis vinifera];; (*TAIR) AT5G51110.2 (e_value=4e-47) | Symbols: | Transcriptional coactivator/pterin dehydratase | chr5:20778316-20779380 REVERSE LENGTH=193;; (*ITAG) Solyc00g024150.2.1 (e_value=3e-89) genomic_reference:SL2.40ch00 gene_region:12180218-12182879 transcript_region:SL2.40ch00:12180218..12182879+ go_terms:GO:0004160 functional_description:"Pterin-4-alpha-carbinolamine dehydratase (AHRD V1 *-** B6T9C1_MAIZE); contains Interpro domain(s) IPR001533 Transcriptional coactivator/pterin dehydratase "; GO:0004160 NbS00045179g0011.1 protein AED:0.15 eAED:0.15 QI:173|1|0.88|1|1|1|9|0|303; (*GB) gi|225454956|ref|XP_002280522.1| (e_value=6e-133) PREDICTED: superoxide dismutase [Fe], chloroplastic [Vitis vinifera];; (*SWP) sp|P22302|SODF_NICPL (e_value=7e-112) Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1;; (*TAIR) AT5G51100.1 (e_value=4e-115) | Symbols: FSD2 | Fe superoxide dismutase 2 | chr5:20773357-20775635 REVERSE LENGTH=305;; (*ITAG) Solyc03g095180.2.1 (e_value=1e-164) genomic_reference:SL2.40ch03 gene_region:49595566-49598384 transcript_region:SL2.40ch03:49595566..49598384+ go_terms:GO:0004784 functional_description:"Superoxide dismutase (AHRD V1 **** Q7YK44_SOLLC); contains Interpro domain(s) IPR001189 Manganese/iron superoxide dismutase "; GO:0004784 NbS00045179g0015.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|0.5|0.33|3|0|89 NbS00003262g0006.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0.5|2|0|142 NbS00028036g0007.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|463; (*GB) gi|297744564|emb|CBI37826.3| (e_value=2e-175) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G05630.1 (e_value=4e-109) | Symbols: | Amino acid permease family protein | chr5:1682541-1684013 FORWARD LENGTH=490;; (*ITAG) Solyc08g075710.2.1 (e_value=9e-138) genomic_reference:SL2.40ch08 gene_region:57004882-57011338 transcript_region:SL2.40ch08:57004882..57011338+ go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME2_HELPE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00028036g0008.1 protein AED:0.09 eAED:0.09 QI:188|1|1|1|1|1|10|357|1444; (*GB) gi|359489333|ref|XP_002265346.2| (e_value=0.0) PREDICTED: ABC transporter C family member 9-like [Vitis vinifera];; (*SWP) sp|Q9M1C7|AB9C_ARATH (e_value=0.0) ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2;; (*TAIR) AT3G60160.1 (e_value=0.0) | Symbols: ATMRP9, MRP9, ABCC9 | multidrug resistance-associated protein 9 | chr3:22223829-22229195 REVERSE LENGTH=1506;; (*ITAG) Solyc10g024420.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:13997548-14004636 transcript_region:SL2.40ch10:13997548..14004636- go_terms:GO:0015431 functional_description:"ABC transporter C family member 9 (AHRD V1 **-- AB9C_ARATH); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00028036g0011.1 protein AED:0.20 eAED:0.34 QI:0|0|0|1|0|0|6|0|307; (*GB) gi|308742593|gb|ADO33444.1| (e_value=8e-90) photosystem II CP43 chlorophyll apoprotein [Smilax china];; (*SWP) sp|A4QJJ5|PSBC_AETGR (e_value=2e-76) Photosystem II CP43 chlorophyll apoprotein OS=Aethionema grandiflora GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=2e-77) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc00g230070.1.1 (e_value=3e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19614385-19614648 transcript_region:SL2.40ch00:19614385..19614648- go_terms:GO:0016020 functional_description:"Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- D1L8N4_BRANA); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like "; GO:0016020 NbS00028036g0012.1 protein AED:0.43 eAED:0.66 QI:0|0|0|1|0|0|2|0|72; (*SWP) sp|Q19VC6|PSBC_CHLAT (e_value=4e-15) Photosystem II CP43 chlorophyll apoprotein OS=Chlorokybus atmophyticus GN=psbC PE=3 SV=2;; (*ITAG) ATCG00280.1 (e_value=4e-15) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473; NbS00053635g0006.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.5|0|0.5|2|0|278; (*GB) gi|1717953|sp|P51135.1|UCRI5_TOBAC (e_value=2e-165) RecName: Full=Cytochrome b-c1 complex subunit Rieske-5, mitochondrial; AltName: Full=Complex III subunit 5-5; AltName: Full=Rieske iron-sulfur protein 5; Short=RISP5; AltName: Full=Ubiquinol-cytochrome c reductase iron-sulfur subunit 5; Flags: Precursor;; (*SWP) sp|P51135|UCRI5_TOBAC (e_value=7e-167) Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G13430.1 (e_value=8e-134) | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur subunit | chr5:4305414-4307399 REVERSE LENGTH=272;; (*ITAG) Solyc11g039840.1.1 (e_value=7e-149) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:26506797-26509759 transcript_region:SL2.40ch11:26506797..26509759+ go_terms:GO:0008121,GO:0046872 functional_description:"Ubiquinol-cytochrome c reductase iron-sulfur subunit (AHRD V1 **** Q38M54_SOLTU); contains Interpro domain(s) IPR005805 Rieske iron-sulphur protein, C-terminal "; GO:0008121,GO:0046872 NbS00053635g0009.1 protein AED:0.26 eAED:0.26 QI:128|1|0.85|1|1|1|7|248|204; (*GB) gi|351723417|ref|NP_001237278.1| (e_value=6e-144) uncharacterized protein LOC100306084 [Glycine max];; (*SWP) sp|Q9XI05|PSB3A_ARATH (e_value=1e-142) Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2;; (*TAIR) AT1G21720.1 (e_value=8e-144) | Symbols: PBC1 | proteasome beta subunit C1 | chr1:7626394-7628070 FORWARD LENGTH=204;; (*ITAG) Solyc04g009410.2.1 (e_value=1e-144) genomic_reference:SL2.40ch04 gene_region:2835286-2840148 transcript_region:SL2.40ch04:2835286..2840148+ go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6SXW4_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0005515,GO:0004175 NbS00006362g0005.1 protein AED:0.05 eAED:0.05 QI:203|1|1|1|1|1|4|300|157; (*GB) gi|225454581|ref|XP_002263858.1| (e_value=1e-38) PREDICTED: coiled-coil domain-containing protein 12 isoform 1 [Vitis vinifera];; (*SWP) sp|Q8R344|CCD12_MOUSE (e_value=8e-12) Coiled-coil domain-containing protein 12 OS=Mus musculus GN=Ccdc12 PE=1 SV=2;; (*TAIR) AT3G05070.1 (e_value=7e-39) | Symbols: | CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). | chr3:1416480-1417533 FORWARD LENGTH=144;; (*ITAG) Solyc06g072170.2.1 (e_value=1e-49) genomic_reference:SL2.40ch06 gene_region:40874337-40878363 transcript_region:SL2.40ch06:40874337..40878363+ functional_description:"Coiled-coil domain-containing protein 12 (AHRD V1 *-*- B5X826_SALSA); contains Interpro domain(s) IPR013169 mRNA splicing factor, Cwf18 "; NbS00006362g0110.1 protein AED:0.11 eAED:0.08 QI:281|1|0.88|1|0.75|0.77|9|939|247 NbS00006362g0117.1 protein AED:0.19 eAED:0.19 QI:343|1|1|1|0.88|0.9|10|675|283 NbS00006362g0116.1 protein AED:0.21 eAED:0.21 QI:0|1|0.75|1|0.66|0.25|4|0|201 NbS00006362g0206.1 protein AED:0.28 eAED:0.30 QI:727|0.5|0.46|0.92|0.83|0.84|13|582|269 NbS00006362g0202.1 protein AED:0.26 eAED:0.35 QI:0|0.33|0|0.71|1|1|7|0|230 NbS00020894g0001.1 protein AED:0.02 eAED:0.02 QI:0|0.8|0.66|1|1|1|6|85|274; (*GB) gi|225424017|ref|XP_002279412.1| (e_value=8e-76) PREDICTED: transcription factor bHLH75 [Vitis vinifera];; (*SWP) sp|A4D998|BH075_ARATH (e_value=1e-57) Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1;; (*TAIR) AT1G25330.1 (e_value=8e-59) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:8880515-8882018 REVERSE LENGTH=223;; (*ITAG) Solyc04g007300.2.1 (e_value=2e-119) genomic_reference:SL2.40ch04 gene_region:1017255-1020092 transcript_region:SL2.40ch04:1017255..1020092- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00020894g0014.1 protein AED:0.07 eAED:0.07 QI:80|1|1|1|0.54|0.5|12|133|667; (*GB) gi|255569474|ref|XP_002525704.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G21720.1 (e_value=0.0) | Symbols: | Plant protein of unknown function (DUF639) | chr2:9273696-9276802 FORWARD LENGTH=734;; (*ITAG) Solyc04g007290.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1002835-1007848 transcript_region:SL2.40ch04:1002835..1007848- functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00020894g0011.1 protein AED:0.35 eAED:0.35 QI:165|1|1|1|1|1|5|313|211; (*GB) gi|300836828|gb|ADK38541.1| (e_value=4e-116) methylketone synthase IIa [Solanum lycopersicum];; (*TAIR) AT1G68260.1 (e_value=1e-80) | Symbols: | Thioesterase superfamily protein | chr1:25585976-25587601 REVERSE LENGTH=190;; (*ITAG) Solyc04g007260.2.1 (e_value=7e-119) genomic_reference:SL2.40ch04 gene_region:976114-981994 transcript_region:SL2.40ch04:976114..981994- go_terms:GO:0016291 functional_description:"Thioesterase superfamily (AHRD V1 *-** Q0YNY9_9CHLB); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00020894g0012.1 protein AED:0.24 eAED:0.29 QI:25|0|0|1|0|0|2|0|237; (*GB) gi|225424001|ref|XP_002283553.1| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100244058 [Vitis vinifera];; (*ITAG) Solyc04g007250.1.1 (e_value=5e-69) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:974309-975106 transcript_region:SL2.40ch04:974309..975106- functional_description:"Unknown Protein (AHRD V1)"; NbS00012193g0005.1 protein AED:0.03 eAED:0.04 QI:0|0.75|0.6|1|0.75|0.6|5|310|398; (*GB) gi|296084933|emb|CBI28342.3| (e_value=6e-169) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G27590.1 (e_value=2e-162) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:11777768-11779777 REVERSE LENGTH=372;; (*ITAG) Solyc06g074380.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42391661-42395489 transcript_region:SL2.40ch06:42391661..42395489- functional_description:"Methyltransferase domain family (AHRD V1 ***- B5JXE3_9GAMM)"; NbS00025217g0014.1 protein AED:0.28 eAED:0.28 QI:501|0.81|0.75|1|0.63|0.58|12|0|416; (*GB) gi|356530491|ref|XP_003533814.1| (e_value=0.0) PREDICTED: probable sugar phosphate/phosphate translocator At3g17430-like [Glycine max];; (*SWP) sp|Q9LRP2|PT317_ARATH (e_value=0.0) Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=2 SV=1;; (*TAIR) AT3G17430.1 (e_value=0.0) | Symbols: | Nucleotide-sugar transporter family protein | chr3:5966597-5968962 FORWARD LENGTH=375;; (*ITAG) Solyc02g066910.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31748752-31756949 transcript_region:SL2.40ch02:31748752..31756949+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* B6U937_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00025217g0002.1 protein AED:0.36 eAED:0.36 QI:0|1|0.75|1|1|1|4|0|259; (*GB) gi|624925|dbj|BAA05170.1| (e_value=1e-98) RNA-binding glycine rich protein [Nicotiana sylvestris];; (*SWP) sp|Q9SVM8|GRP2_ARATH (e_value=3e-34) Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1;; (*TAIR) AT5G61030.1 (e_value=2e-41) | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3 | chr5:24560870-24562152 FORWARD LENGTH=309;; (*ITAG) Solyc02g088790.2.1 (e_value=1e-53) genomic_reference:SL2.40ch02 gene_region:45342858-45345771 transcript_region:SL2.40ch02:45342858..45345771- go_terms:GO:0003730 functional_description:"RNA-binding protein (AHRD V1 *-** Q941H8_SOLTU); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0003730 NbS00025217g0015.1 protein AED:0.38 eAED:0.45 QI:0|1|0.5|1|0|0.5|2|157|138; (*GB) gi|359488522|ref|XP_002280011.2| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100249838 [Vitis vinifera];; (*TAIR) AT5G39210.1 (e_value=3e-33) | Symbols: CRR7 | chlororespiratory reduction 7 | chr5:15703231-15703999 FORWARD LENGTH=156;; (*ITAG) Solyc02g066920.2.1 (e_value=6e-48) genomic_reference:SL2.40ch02 gene_region:31758031-31760293 transcript_region:SL2.40ch02:31758031..31760293+ functional_description:"Genomic DNA chromosome 5 TAC clone K3 (AHRD V1 ***- Q9FL87_ARATH)"; NbS00025217g0017.1 protein AED:0.19 eAED:0.19 QI:174|0.81|0.66|1|0.81|0.91|12|0|585; (*GB) gi|296082200|emb|CBI21205.3| (e_value=2e-156) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LIA4|RIK_ARATH (e_value=6e-113) Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2;; (*TAIR) AT3G29390.1 (e_value=5e-114) | Symbols: RIK | RS2-interacting KH protein | chr3:11289675-11294524 FORWARD LENGTH=578;; (*ITAG) Solyc02g066940.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31764736-31772294 transcript_region:SL2.40ch02:31764736..31772294- go_terms:GO:0003723 functional_description:"Splicing factor -like RNA-binding domain protein (AHRD V1 *--* C7SB52_PLADU)"; GO:0003723 NbS00038672g0007.1 protein AED:0.17 eAED:0.17 QI:0|0.90|0.81|0.90|0.90|0.95|22|0|964; (*GB) gi|225438458|ref|XP_002275101.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266278 [Vitis vinifera];; (*TAIR) AT2G07360.1 (e_value=0.0) | Symbols: | SH3 domain-containing protein | chr2:3047623-3057099 REVERSE LENGTH=1196;; (*ITAG) Solyc05g025740.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:36208691-36250687 transcript_region:SL2.40ch05:36208691..36250687- functional_description:"SH3 domain-containing protein (AHRD V1 ***- D7LA99_ARALY); contains Interpro domain(s) IPR001452 Src homology-3 domain "; NbS00001174g0003.1 protein AED:0.12 eAED:0.12 QI:152|1|1|1|1|1|15|450|530; (*GB) gi|37953301|gb|AAR05449.1| (e_value=0.0) alanine aminotransferase [Capsicum annuum];; (*SWP) sp|Q9LDV4|ALAT2_ARATH (e_value=0.0) Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1;; (*TAIR) AT1G72330.1 (e_value=0.0) | Symbols: ALAAT2 | alanine aminotransferase 2 | chr1:27233637-27236571 FORWARD LENGTH=540;; (*ITAG) Solyc06g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36234795-36239218 transcript_region:SL2.40ch06:36234795..36239218- go_terms:GO:0005524,GO:0004021 functional_description:"Alanine aminotransferase (AHRD V1 **** Q6VEJ5_CAPAN); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0005524,GO:0004021 NbS00027303g0007.1 protein AED:0.29 eAED:0.29 QI:108|1|1|1|1|1|6|299|203; (*GB) gi|225441151|ref|XP_002267396.1| (e_value=7e-75) PREDICTED: BRCA1-associated RING domain protein 1 [Vitis vinifera];; (*SWP) sp|Q99728|BARD1_HUMAN (e_value=3e-17) BRCA1-associated RING domain protein 1 OS=Homo sapiens GN=BARD1 PE=1 SV=2;; (*TAIR) AT3G09890.1 (e_value=4e-68) | Symbols: | Ankyrin repeat family protein | chr3:3032678-3034158 FORWARD LENGTH=206;; (*ITAG) Solyc10g083870.1.1 (e_value=4e-81) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62923932-62926241 transcript_region:SL2.40ch10:62923932..62926241- functional_description:"Ankyrin repeat domain 1 (AHRD V1 **-- B5DG59_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00027867g0008.1 protein AED:0.14 eAED:0.14 QI:188|1|0.83|1|1|1|6|0|401; (*GB) gi|2499498|sp|Q42962.1|PGKY_TOBAC (e_value=0.0) RecName: Full=Phosphoglycerate kinase, cytosolic;; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=0.0) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=0.0) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00027867g0007.1 protein AED:0.32 eAED:0.32 QI:159|1|1|1|0.90|0.91|12|464|379; (*GB) gi|255544614|ref|XP_002513368.1| (e_value=0.0) thiosulfate sulfertansferase, putative [Ricinus communis];; (*SWP) sp|O64530|STR1_ARATH (e_value=0.0) Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE=1 SV=1;; (*TAIR) AT1G79230.1 (e_value=0.0) | Symbols: ST1, ATMST1, MST1, ATRDH1, STR1 | mercaptopyruvate sulfurtransferase 1 | chr1:29800824-29803679 FORWARD LENGTH=379;; (*ITAG) Solyc07g066580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:65198760-65204479 transcript_region:SL2.40ch07:65198760..65204479+ go_terms:GO:0004792,GO:0016784 functional_description:"Mercaptopyruvate sulfurtransferase-like protein (AHRD V1 **** C0LIR4_SOLLC); contains Interpro domain(s) IPR001763 Rhodanese-like IPR001307 Thiosulphate sulfurtransferase, conserved site "; GO:0004792,GO:0016784 NbS00010440g0001.1 protein AED:0.14 eAED:0.19 QI:0|0.14|0.12|1|1|1|8|46|618; (*GB) gi|224072821|ref|XP_002303898.1| (e_value=3e-70) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0D3J9|C3H53_ORYSJ (e_value=4e-34) Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1;; (*TAIR) AT3G21100.2 (e_value=7e-29) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7399162-7401870 FORWARD LENGTH=602;; (*ITAG) Solyc11g065320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47794452-47797533 transcript_region:SL2.40ch11:47794452..47797533- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Zinc finger CCCH domain-containing protein 23 (AHRD V1 ***- C3H23_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003676,GO:0008270,GO:0000166 NbS00061883g0001.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|177; (*ITAG) Solyc09g011910.2.1 (e_value=1e-39) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00013558g0007.1 protein AED:0.20 eAED:0.20 QI:225|0.5|1|1|1|1|3|238|288; (*GB) gi|75296290|sp|Q7XJ81.1|SCRK2_SOLHA (e_value=0.0) RecName: Full=Fructokinase-2;; (*SWP) sp|Q7XJ81|SCRK2_SOLHA (e_value=0.0) Fructokinase-2 OS=Solanum habrochaites GN=FRK2 PE=2 SV=1;; (*TAIR) AT3G59480.1 (e_value=5e-179) | Symbols: | pfkB-like carbohydrate kinase family protein | chr3:21983103-21984440 FORWARD LENGTH=326;; (*ITAG) Solyc06g073190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41483219-41485991 transcript_region:SL2.40ch06:41483219..41485991- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase-like (AHRD V1 **-* Q307Z3_SOLTU); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0008865,GO:0008959 NbS00015831g0003.1 protein AED:0.06 eAED:0.06 QI:398|1|0.6|1|0.75|0.6|5|328|889; (*GB) gi|224123648|ref|XP_002330173.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*TAIR) AT1G32120.1 (e_value=9e-15) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). | chr1:11552926-11558608 FORWARD LENGTH=1206;; (*ITAG) Solyc09g009160.1.1 (e_value=0.0) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2493689-2496994 transcript_region:SL2.40ch09:2493689..2496994+ functional_description:"Aminotransferase-like (AHRD V1 *-*- Q5JJS3_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00011920g0001.1 protein AED:0.17 eAED:0.17 QI:0|0.4|0.33|0.83|1|1|6|0|439; (*GB) gi|325516276|gb|ADZ24716.1| (e_value=0.0) Sec14-like protein [Solanum pennellii];; (*SWP) sp|Q9SCU1|PATL6_ARATH (e_value=0.0) Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1;; (*TAIR) AT3G51670.1 (e_value=0.0) | Symbols: | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:19168912-19170848 FORWARD LENGTH=409;; (*ITAG) Solyc09g015080.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:7923019-7925704 transcript_region:SL2.40ch09:7923019..7925704- go_terms:GO:0005215 functional_description:"Phosphatidylinositol transfer protein SFH5 (AHRD V1 *--- C5JFB2_AJEDS); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0005215 NbS00028598g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|359479233|ref|XP_002275500.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase PUB23-like [Vitis vinifera];; (*SWP) sp|Q84TG3|PUB23_ARATH (e_value=1e-140) E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1;; (*TAIR) AT2G35930.1 (e_value=8e-142) | Symbols: PUB23 | plant U-box 23 | chr2:15083101-15084336 REVERSE LENGTH=411;; (*ITAG) Solyc01g009330.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3515178-3516458 transcript_region:SL2.40ch01:3515178..3516458- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR003613 U box domain "; GO:0004842 NbS00061478g0003.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|4|0|523; (*GB) gi|19885|emb|CAA47324.1| (e_value=0.0) monosaccharid transporter [Nicotiana tabacum];; (*SWP) sp|Q41144|STC_RICCO (e_value=0.0) Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1;; (*TAIR) AT1G11260.1 (e_value=0.0) | Symbols: STP1, ATSTP1 | sugar transporter 1 | chr1:3777460-3780133 FORWARD LENGTH=522;; (*ITAG) Solyc02g079220.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38409479-38413033 transcript_region:SL2.40ch02:38409479..38413033+ go_terms:GO:0015578 functional_description:"Solute carrier family 2, facilitated glucose transporter member 8 (AHRD V1 **** GTR8_HUMAN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015578 NbS00017562g0011.1 protein AED:0.29 eAED:0.29 QI:0|1|0.5|1|0|0|2|0|93; (*GB) gi|225425746|ref|XP_002276549.1| (e_value=3e-37) PREDICTED: transcription factor bHLH135 [Vitis vinifera];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=2e-26) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G26945.1 (e_value=1e-35) | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9351571-9352474 FORWARD LENGTH=94;; (*ITAG) Solyc05g007210.2.1 (e_value=1e-43) genomic_reference:SL2.40ch05 gene_region:1820613-1822267 transcript_region:SL2.40ch05:1820613..1822267- go_terms:GO:0005634,GO:0045449 functional_description:"DNA-binding protein-like (AHRD V1 ***- Q9FLE9_ARATH); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005634,GO:0045449 NbS00019796g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|179; (*GB) gi|224139358|ref|XP_002323073.1| (e_value=1e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SG96|ATL72_ARATH (e_value=2e-40) RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1;; (*TAIR) AT3G10910.1 (e_value=2e-41) | Symbols: | RING/U-box superfamily protein | chr3:3413068-3413613 REVERSE LENGTH=181;; (*ITAG) Solyc06g049030.2.1 (e_value=3e-51) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019796g0004.1 protein AED:0.04 eAED:0.04 QI:22|1|0.5|1|1|1|2|0|191 NbS00035845g0018.1 protein AED:0.30 eAED:0.31 QI:0|0|0|0.33|1|1|3|0|219; (*GB) gi|225456592|ref|XP_002265769.1| (e_value=9e-18) PREDICTED: uncharacterized protein LOC100265622 [Vitis vinifera];; (*SWP) sp|Q10Q07|NNJA1_ORYSJ (e_value=2e-18) Ninja-family protein Os03g0214200 OS=Oryza sativa subsp. japonica GN=Os03g0214200 PE=2 SV=1;; (*TAIR) AT1G13740.1 (e_value=2e-18) | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713969-4715158 FORWARD LENGTH=348;; (*ITAG) Solyc02g032140.1.1 (e_value=7e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:18346432-18346881 transcript_region:SL2.40ch02:18346432..18346881+ functional_description:"Ninja-family protein Os03g0214200 (AHRD V1 *-*- NNJA1_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; NbS00035845g0011.1 protein AED:0.35 eAED:0.35 QI:0|0|0|0.33|1|1|3|0|69; (*ITAG) Solyc09g010490.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:3846697-3847988 transcript_region:SL2.40ch09:3846697..3847988+ functional_description:"LOB domain family protein (AHRD V1 *-*- D7L292_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00035845g0019.1 protein AED:0.28 eAED:0.28 QI:174|0.71|0.75|1|0.85|0.87|8|214|295; (*GB) gi|356508500|ref|XP_003522994.1| (e_value=2e-140) PREDICTED: uncharacterized mitochondrial carrier C1442.03-like [Glycine max];; (*SWP) sp|Q55E45|MCFE_DICDI (e_value=3e-27) Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1;; (*TAIR) AT1G74240.1 (e_value=5e-126) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27917437-27919987 FORWARD LENGTH=364;; (*ITAG) Solyc12g056660.1.1 (e_value=8e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48016818-48021020 transcript_region:SL2.40ch12:48016818..48021020- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00035845g0002.1 protein AED:0.42 eAED:0.47 QI:48|1|0.5|1|0|0|2|0|215; (*GB) gi|225268|prf||1211235DD (e_value=1e-80) NADH dehydrogenase 2-like ORF 180;; (*SWP) sp|P0CC48|NU2C1_COFAR (e_value=1e-77) NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=2e-68) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=4e-71) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00047279g0002.1 protein AED:0.27 eAED:0.27 QI:13|-1|0|1|-1|0|1|0|132; (*GB) gi|225452184|ref|XP_002265795.1| (e_value=5e-58) PREDICTED: 54S ribosomal protein L37, mitochondrial-like [Vitis vinifera];; (*TAIR) AT3G01740.1 (e_value=6e-52) | Symbols: | Mitochondrial ribosomal protein L37 | chr3:268118-268498 FORWARD LENGTH=126;; (*ITAG) Solyc11g010180.1.1 (e_value=8e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3264922-3269577 transcript_region:SL2.40ch11:3264922..3269577- functional_description:"Mitochondrial/chloroplast ribosomal protein L54/L37 (ISS) (AHRD V1 *-*- Q01BU7_OSTTA); contains Interpro domain(s) IPR013870 Ribosomal protein L37, mitochondrial "; NbS00041209g0002.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|232; (*GB) gi|224094711|ref|XP_002310203.1| (e_value=8e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|Q40287|UFOG5_MANES (e_value=1e-58) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*TAIR) AT3G50740.1 (e_value=1e-57) | Symbols: UGT72E1 | UDP-glucosyl transferase 72E1 | chr3:18855348-18856811 REVERSE LENGTH=487;; (*ITAG) Solyc02g085660.1.1 (e_value=5e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43068424-43069896 transcript_region:SL2.40ch02:43068424..43069896- go_terms:GO:0047209,GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209,GO:0080043 NbS00041209g0001.1 protein AED:0.32 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|178; (*GB) gi|356517124|ref|XP_003527240.1| (e_value=2e-42) PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Glycine max];; (*SWP) sp|Q40287|UFOG5_MANES (e_value=3e-37) Anthocyanidin 3-O-glucosyltransferase 5 OS=Manihot esculenta GN=GT5 PE=2 SV=1;; (*TAIR) AT2G18570.1 (e_value=4e-31) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr2:8063429-8064841 FORWARD LENGTH=470;; (*ITAG) Solyc02g085660.1.1 (e_value=7e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43068424-43069896 transcript_region:SL2.40ch02:43068424..43069896- go_terms:GO:0047209,GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0047209,GO:0080043 NbS00012029g0009.1 protein AED:0.22 eAED:0.22 QI:125|0.9|0.90|1|0.9|0.90|11|174|321; (*GB) gi|225433688|ref|XP_002266909.1| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 3 subunit H [Vitis vinifera];; (*SWP) sp|Q9C5Z2|EIF3H_ARATH (e_value=2e-176) Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2;; (*TAIR) AT1G10840.1 (e_value=1e-177) | Symbols: TIF3H1 | translation initiation factor 3 subunit H1 | chr1:3607885-3610299 REVERSE LENGTH=337;; (*ITAG) Solyc12g098680.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64446795-64452106 transcript_region:SL2.40ch12:64446795..64452106+ functional_description:"Eukaryotic translation initiation factor 3 subunit 3 (AHRD V1 ***- B6SHE0_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; NbS00012029g0007.1 protein AED:0.27 eAED:0.27 QI:0|1|0.75|1|1|1|8|0|399; (*GB) gi|225433684|ref|XP_002266620.1| (e_value=0.0) PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Vitis vinifera];; (*SWP) sp|Q9Y7K5|YGI3_SCHPO (e_value=2e-33) Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=2 SV=2;; (*TAIR) AT5G56190.1 (e_value=0.0) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22742563-22744909 FORWARD LENGTH=441;; (*ITAG) Solyc12g098690.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64455004-64459831 transcript_region:SL2.40ch12:64455004..64459831+ functional_description:"WD-repeat protein-like (AHRD V1 **-- Q8LG28_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00012029g0008.1 protein AED:0.29 eAED:0.29 QI:0|0|0|1|1|1|2|0|82 NbS00043034g0001.1 protein AED:0.39 eAED:0.39 QI:0|0.8|0.66|1|1|1|6|250|163; (*GB) gi|255578876|ref|XP_002530292.1| (e_value=7e-84) calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis];; (*SWP) sp|Q8N5S9|KKCC1_HUMAN (e_value=2e-27) Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2;; (*TAIR) AT3G45240.2 (e_value=5e-81) | Symbols: GRIK1 | geminivirus rep interacting kinase 1 | chr3:16570774-16572902 REVERSE LENGTH=396;; (*ITAG) Solyc11g069310.1.1 (e_value=8e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51007185-51010200 transcript_region:SL2.40ch11:51007185..51010200+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 ***- Q8LPG6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC25412603g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|106; (*ITAG) Solyc03g083830.1.1 (e_value=2e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47273515-47274030 transcript_region:SL2.40ch03:47273515..47274030- functional_description:"Unknown Protein (AHRD V1)"; NbS00013697g0008.1 protein AED:0.36 eAED:0.36 QI:163|0.8|0.66|0.83|1|1|6|0|272; (*GB) gi|255576737|ref|XP_002529256.1| (e_value=1e-176) ER lumen protein retaining receptor, putative [Ricinus communis];; (*SWP) sp|P48583|ERD2_CAEEL (e_value=6e-28) ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2;; (*TAIR) AT4G38790.1 (e_value=3e-169) | Symbols: | ER lumen protein retaining receptor family protein | chr4:18111426-18112977 FORWARD LENGTH=273;; (*ITAG) Solyc01g111090.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89231575-89237853 transcript_region:SL2.40ch01:89231575..89237853- go_terms:GO:0005046 functional_description:"ER lumen protein retaining receptor family protein (AHRD V1 ***- D7LL09_ARALY); contains Interpro domain(s) IPR000133 ER lumen protein retaining receptor "; GO:0005046 NbS00023540g0008.1 protein AED:0.34 eAED:0.35 QI:0|0.5|0|1|0|0.33|3|0|181; (*GB) gi|26190464|emb|CAD56868.1| (e_value=9e-102) cyclin-dependent kinase inhibitor [Nicotiana tabacum];; (*ITAG) Solyc02g090680.2.1 (e_value=3e-36) genomic_reference:SL2.40ch02 gene_region:46798032-46799468 transcript_region:SL2.40ch02:46798032..46799468+ go_terms:GO:0019210,GO:0005507 functional_description:"Cyclin-dependent kinase inhibitor 7 (AHRD V1 *-** KRP7_ARATH); contains Interpro domain(s) IPR016701 Cyclin-dependent kinase inhibitor, plant "; GO:0019210,GO:0005507 NbS00023540g0009.1 protein AED:0.07 eAED:0.07 QI:265|1|1|1|1|1|9|512|591; (*GB) gi|225438680|ref|XP_002277444.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At3g27390 [Vitis vinifera];; (*SWP) sp|Q8GUM4|Y3739_ARATH (e_value=1e-122) Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=2;; (*TAIR) AT4G37030.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17452150-17454629 FORWARD LENGTH=569;; (*ITAG) Solyc02g090690.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:46802226-46805120 transcript_region:SL2.40ch02:46802226..46805120- functional_description:"Uncharacterized membrane protein At3g27390 (AHRD V1 ***- Y3739_ARATH)"; NbS00021150g0011.1 protein AED:0.33 eAED:0.33 QI:0|1|0|1|1|1|2|0|192; (*GB) gi|224053539|ref|XP_002297863.1| (e_value=2e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT2G33510.1 (e_value=5e-42) | Symbols: | CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). | chr2:14194195-14195473 FORWARD LENGTH=189;; (*ITAG) Solyc01g009770.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:4155983-4159096 transcript_region:SL2.40ch01:4155983..4159096- go_terms:GO:0005515 functional_description:"Major ampullate spidroin 2-2 (AHRD V1 *-*- B6TJV0_MAIZE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00021150g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|168; (*GB) gi|225468805|ref|XP_002263365.1| (e_value=2e-81) PREDICTED: GEM-like protein 5 [Vitis vinifera];; (*SWP) sp|Q9LYV6|GEML5_ARATH (e_value=2e-78) GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1;; (*TAIR) AT5G13200.1 (e_value=2e-79) | Symbols: | GRAM domain family protein | chr5:4207081-4208079 FORWARD LENGTH=272;; (*ITAG) Solyc01g009760.2.1 (e_value=2e-104) genomic_reference:SL2.40ch01 gene_region:4138755-4141165 transcript_region:SL2.40ch01:4138755..4141165+ functional_description:"GRAM-containing/ABA-responsive protein (Fragment) (AHRD V1 *--- C6FBQ3_PSEMZ); contains Interpro domain(s) IPR004182 GRAM "; NbS00033810g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|108 NbS00043789g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|155; (*GB) gi|359487607|ref|XP_003633621.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100855194 [Vitis vinifera];; (*ITAG) Solyc01g102460.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:83021841-83022548 transcript_region:SL2.40ch01:83021841..83022548- functional_description:"Unknown Protein (AHRD V1)"; NbS00032728g0006.1 protein AED:0.15 eAED:0.15 QI:74|0.92|0.92|1|0.96|0.96|26|613|885; (*GB) gi|255552957|ref|XP_002517521.1| (e_value=0.0) NMDA receptor-regulated protein, putative [Ricinus communis];; (*SWP) sp|Q6N069|NAA16_HUMAN (e_value=0.0) N-alpha-acetyltransferase 16, NatA auxiliary subunit OS=Homo sapiens GN=NAA16 PE=1 SV=2;; (*TAIR) AT1G80410.1 (e_value=0.0) | Symbols: EMB2753 | tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897;; (*ITAG) Solyc06g066790.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38353956-38371497 transcript_region:SL2.40ch06:38353956..38371497+ go_terms:GO:0005515,GO:0004596 functional_description:"N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V1 **-* NAA16_MOUSE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0004596 NbS00032728g0005.1 protein AED:0.66 eAED:0.66 QI:0|0|0|0.66|0|0.33|3|0|129; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-15) hypothetical protein [Nicotiana tabacum]; NbS00023095g0008.1 protein AED:0.22 eAED:0.22 QI:0|0.75|0.8|0.8|0|0|5|1134|125; (*GB) gi|8569102|gb|AAF76447.1|AC015445_14 (e_value=2e-19) Identical to permease homolog (At PER-X) partial cds gb|U83501 and contains a Xanthine/Uracil Permease PF|00860 domain. EST gb|AA712474 comes from this gene [Arabidopsis thaliana];; (*SWP) sp|P93039|NAT4_ARATH (e_value=9e-21) Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2;; (*TAIR) AT1G49960.1 (e_value=7e-22) | Symbols: | Xanthine/uracil permease family protein | chr1:18498700-18501699 FORWARD LENGTH=526;; (*ITAG) Solyc01g106920.2.1 (e_value=9e-36) genomic_reference:SL2.40ch01 gene_region:86388409-86392269 transcript_region:SL2.40ch01:86388409..86392269- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HN10_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00023095g0009.1 protein AED:0.02 eAED:0.02 QI:0|1|0.33|1|1|1|3|0|425; (*GB) gi|225465639|ref|XP_002270447.1| (e_value=2e-143) PREDICTED: uncharacterized protein LOC100240757 [Vitis vinifera];; (*TAIR) AT3G19920.1 (e_value=2e-105) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6929840-6931771 REVERSE LENGTH=416;; (*ITAG) Solyc02g014670.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:8850226-8854239 transcript_region:SL2.40ch02:8850226..8854239+ functional_description:"Genomic DNA chromosome 3 P1 clone MPN9 (AHRD V1 ***- Q9LT16_ARATH)"; NbS00005571g0015.1 protein AED:0.10 eAED:0.18 QI:0|0.33|0.25|1|0|0.25|4|0|294; (*GB) gi|296087746|emb|CBI35002.3| (e_value=4e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q50EX6|ODO1_PETHY (e_value=5e-37) Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1;; (*TAIR) AT3G28470.1 (e_value=6e-59) | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like superfamily protein | chr3:10674579-10675724 REVERSE LENGTH=317;; (*ITAG) Solyc03g059200.1.1 (e_value=4e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:25283881-25284854 transcript_region:SL2.40ch03:25283881..25284854- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- Q9LSI7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00005571g0003.1 protein AED:0.03 eAED:0.04 QI:0|0|0|1|1|1|2|0|317; (*GB) gi|83283979|gb|ABC01897.1| (e_value=0.0) protein transport SEC13-like protein [Solanum tuberosum];; (*SWP) sp|Q9D1M0|SEC13_MOUSE (e_value=1e-105) Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3;; (*TAIR) AT2G30050.1 (e_value=0.0) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:12825540-12826448 FORWARD LENGTH=302;; (*ITAG) Solyc02g087300.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44325520-44326428 transcript_region:SL2.40ch02:44325520..44326428+ go_terms:GO:0005515 functional_description:"Protein transport SEC13-like protein (AHRD V1 **-- Q2PYY1_SOLTU); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00005571g0009.1 protein AED:0.11 eAED:0.12 QI:0|0.83|0.71|1|0.5|0.42|7|892|449; (*GB) gi|225452618|ref|XP_002276119.1| (e_value=2e-152) PREDICTED: uncharacterized protein LOC100266380 [Vitis vinifera];; (*TAIR) AT1G59650.1 (e_value=4e-136) | Symbols: CW14 | Protein of unknown function (DUF1336) | chr1:21920099-21922670 FORWARD LENGTH=492;; (*ITAG) Solyc02g087480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44493134-44496742 transcript_region:SL2.40ch02:44493134..44496742+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00005571g0010.1 protein AED:0.24 eAED:0.24 QI:151|0.84|0.85|1|0.76|0.71|14|222|412; (*GB) gi|225452650|ref|XP_002281959.1| (e_value=0.0) PREDICTED: mannose-1-phosphate guanyltransferase alpha-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q86HG0|GMPPA_DICDI (e_value=2e-121) Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1;; (*TAIR) AT1G74910.2 (e_value=0.0) | Symbols: | ADP-glucose pyrophosphorylase family protein | chr1:28135770-28138456 REVERSE LENGTH=415;; (*ITAG) Solyc03g113790.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57888358-57893883 transcript_region:SL2.40ch03:57888358..57893883- go_terms:GO:0051015 functional_description:"Mannose-1-phosphate guanyltransferase (AHRD V1 ***- B6TBA0_MAIZE); contains Interpro domain(s) IPR005835 Nucleotidyl transferase "; GO:0051015 NbS00006718g0014.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0|0|3|0|230; (*GB) gi|57013879|ref|YP_173353.1| (e_value=5e-96) hypothetical protein NitaMp003 [Nicotiana tabacum];; (*ITAG) Solyc00g281110.1.1 (e_value=1e-73) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:20830500-20830868 transcript_region:SL2.40ch00:20830500..20830868- functional_description:"Unknown Protein (AHRD V1)"; NbS00006718g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|75; (*ITAG) Solyc00g020000.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11806347-11806520 transcript_region:SL2.40ch00:11806347..11806520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006718g0010.1 protein AED:0.41 eAED:0.81 QI:0|0|0|1|0|0.5|2|0|74 NbS00006718g0015.1 protein AED:0.42 eAED:0.52 QI:0|0|0|0.5|0|0|2|0|122; (*GB) gi|57014013|ref|YP_173484.1| (e_value=1e-61) hypothetical protein NitaMp147 [Nicotiana tabacum];; (*SWP) sp|P38450|YMF01_MARPO (e_value=3e-16) Uncharacterized mitochondrial protein ymf1 OS=Marchantia polymorpha GN=YMF1 PE=4 SV=1;; (*ITAG) Solyc00g022100.1.1 (e_value=3e-63) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:12012452-12012931 transcript_region:SL2.40ch00:12012452..12012931- functional_description:"Ribosomal protein L10 (Fragment) (AHRD V1 ***- D1KY68_SARPR)"; NbS00014561g0011.1 protein AED:0.18 eAED:0.21 QI:176|0.47|0.36|0.81|0.90|0.90|22|0|1131; (*GB) gi|359487795|ref|XP_002280804.2| (e_value=0.0) PREDICTED: kinesin-related protein 2-like [Vitis vinifera];; (*SWP) sp|O35231|KIFC3_MOUSE (e_value=1e-95) Kinesin-like protein KIFC3 OS=Mus musculus GN=Kifc3 PE=1 SV=4;; (*TAIR) AT5G27550.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:9727634-9731323 REVERSE LENGTH=765;; (*ITAG) Solyc01g098980.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81089216-81103000 transcript_region:SL2.40ch01:81089216..81103000- go_terms:GO:0006468,GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR015748 Mitogen activated protein kinase kinase kinase 3 "; GO:0006468,GO:0007018 NbS00014561g0015.1 protein AED:0.05 eAED:0.07 QI:0|0|0|1|0.25|0.2|5|0|1035; (*GB) gi|225450971|ref|XP_002280832.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247620 [Vitis vinifera];; (*SWP) sp|F4HZC3|GUX5_ARATH (e_value=6e-161) Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1;; (*TAIR) AT1G08990.1 (e_value=4e-162) | Symbols: PGSIP5 | plant glycogenin-like starch initiation protein 5 | chr1:2888753-2890753 FORWARD LENGTH=566;; (*ITAG) Solyc01g098960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81082155-81084023 transcript_region:SL2.40ch01:81082155..81084023+ go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00026133g0004.1 protein AED:0.15 eAED:0.15 QI:76|1|1|1|0|0.5|2|320|149; (*GB) gi|224128512|ref|XP_002329022.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55160.1 (e_value=1e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20578476-20579803 FORWARD LENGTH=188;; (*ITAG) Solyc03g121520.2.1 (e_value=1e-48) genomic_reference:SL2.40ch03 gene_region:63658315-63662290 transcript_region:SL2.40ch03:63658315..63662290- functional_description:"Unknown Protein (AHRD V1)"; NbS00005706g0003.1 protein AED:0.06 eAED:0.06 QI:247|1|1|1|0.55|0.4|10|619|844; (*GB) gi|359479413|ref|XP_002272391.2| (e_value=3e-138) PREDICTED: uncharacterized protein LOC100243144 [Vitis vinifera];; (*TAIR) AT2G27950.1 (e_value=1e-60) | Symbols: | Ring/U-Box superfamily protein | chr2:11899422-11903171 REVERSE LENGTH=839;; (*ITAG) Solyc11g066500.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49341937-49347457 transcript_region:SL2.40ch11:49341937..49347457+ go_terms:GO:0008270 functional_description:"Neuralized (AHRD V1 *--- B4M452_DROVI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008659g0004.1 protein AED:0.12 eAED:0.12 QI:0|1|0.5|1|1|1|2|0|213; (*GB) gi|77745495|gb|ABB02646.1| (e_value=2e-125) NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum];; (*SWP) sp|Q43844|NDUS7_SOLTU (e_value=8e-126) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=3e-101) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=1e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00035891g0003.1 protein AED:0.04 eAED:0.04 QI:95|1|1|1|1|0.8|5|243|474; (*GB) gi|255553705|ref|XP_002517893.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=3e-39) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49190.1 (e_value=7e-56) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc07g053890.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:59621150-59625735 transcript_region:SL2.40ch07:59621150..59625735+ functional_description:"O-acyltransferase WSD1 (AHRD V1 **-- WSD1_ARATH); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00035891g0004.1 protein AED:0.34 eAED:0.36 QI:0|0|0|1|0|0|2|0|90; (*GB) gi|224079209|ref|XP_002305794.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32480.1 (e_value=1e-21) | Symbols: | Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287;; (*ITAG) Solyc02g078150.2.1 (e_value=4e-20) genomic_reference:SL2.40ch02 gene_region:37508378-37509790 transcript_region:SL2.40ch02:37508378..37509790+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00011117g0024.1 protein AED:0.34 eAED:0.36 QI:310|0.8|0.72|1|0.7|0.45|11|679|427; (*GB) gi|7757910|gb|AAD52847.2|AF137288_1 (e_value=0.0) putative translation initiation factor 2B beta subunit [Nicotiana tabacum];; (*SWP) sp|Q90511|EI2BB_TAKRU (e_value=1e-68) Translation initiation factor eIF-2B subunit beta OS=Takifugu rubripes GN=eif2b2 PE=3 SV=1;; (*TAIR) AT3G07300.2 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr3:2324967-2327380 REVERSE LENGTH=407;; (*ITAG) Solyc11g005600.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:450933-456855 transcript_region:SL2.40ch11:450933..456855- go_terms:GO:0003743 functional_description:"Translation initiation factor 2B (AHRD V1 **** Q2UBN6_ASPOR); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0003743 NbS00011117g0030.1 protein AED:0.10 eAED:0.10 QI:631|0.93|0.93|1|0.86|0.75|16|479|1100; (*GB) gi|356525568|ref|XP_003531396.1| (e_value=0.0) PREDICTED: cellulose synthase A catalytic subunit 6 [UDP-forming]-like [Glycine max];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc11g005560.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:419067-425651 transcript_region:SL2.40ch11:419067..425651+ go_terms:GO:0016020,GO:0008270 functional_description:"Cellulose synthase (AHRD V1 ***- B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016020,GO:0008270 NbS00011117g0021.1 protein AED:0.11 eAED:0.11 QI:124|1|1|1|0.8|0.66|6|884|443; (*GB) gi|225429894|ref|XP_002283626.1| (e_value=8e-171) PREDICTED: ribosomal RNA small subunit methyltransferase H-like [Vitis vinifera];; (*SWP) sp|Q6MEG4|RSMH_PARUW (e_value=5e-71) Ribosomal RNA small subunit methyltransferase H OS=Protochlamydia amoebophila (strain UWE25) GN=rsmH PE=3 SV=1;; (*TAIR) AT5G10910.1 (e_value=4e-147) | Symbols: | mraW methylase family protein | chr5:3439588-3441517 FORWARD LENGTH=434;; (*ITAG) Solyc11g005580.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:432322-435675 transcript_region:SL2.40ch11:432322..435675+ go_terms:GO:0031177,GO:0008168 functional_description:"Ribosomal RNA small subunit methyltransferase H (AHRD V1 ***- D6YUB3_WADCW); contains Interpro domain(s) IPR002903 Bacterial methyltransferase "; GO:0031177,GO:0008168 NbS00011117g0027.1 protein AED:0.04 eAED:0.13 QI:0|0|0|1|0|0.5|2|0|367; (*GB) gi|147782355|emb|CAN61307.1| (e_value=1e-36) hypothetical protein VITISV_035681 [Vitis vinifera];; (*TAIR) AT1G05920.1 (e_value=2e-11) | Symbols: | Domain of unknown function (DUF313) | chr1:1797044-1797991 FORWARD LENGTH=315;; (*ITAG) Solyc01g080610.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:72349907-72353281 transcript_region:SL2.40ch01:72349907..72353281- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005508 Protein of unknown function DUF313 "; NbS00011117g0022.1 protein AED:0.29 eAED:0.29 QI:93|1|1|1|0.75|0.6|5|271|163; (*GB) gi|225435882|ref|XP_002264937.1| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100249562 isoform 1 [Vitis vinifera];; (*TAIR) AT2G44820.1 (e_value=2e-31) | Symbols: | unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr2:18484690-18485517 FORWARD LENGTH=194;; (*ITAG) Solyc11g005570.1.1 (e_value=1e-57) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:428160-431554 transcript_region:SL2.40ch11:428160..431554+ go_terms:GO:0005576 functional_description:"Unknown Protein (AHRD V1)"; GO:0005576 NbS00011117g0020.1 protein AED:0.36 eAED:0.37 QI:0|1|1|1|0.75|0.6|5|207|262; (*GB) gi|350539391|ref|NP_001234135.1| (e_value=8e-174) SKIP5-like protein [Solanum lycopersicum];; (*SWP) sp|Q94FT2|SKIP5_ARATH (e_value=3e-129) F-box protein SKIP5 OS=Arabidopsis thaliana GN=SKIP5 PE=1 SV=1;; (*TAIR) AT3G54480.1 (e_value=2e-130) | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein 5 | chr3:20170883-20173325 REVERSE LENGTH=274;; (*ITAG) Solyc11g005590.1.1 (e_value=2e-176) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:446522-449364 transcript_region:SL2.40ch11:446522..449364+ functional_description:"F-box protein SKIP5 (AHRD V1 ***- SKIP5_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020352g0001.1 protein AED:0.08 eAED:0.08 QI:0|0|0|0.5|1|1|2|0|92; (*GB) gi|350535334|ref|NP_001234189.1| (e_value=1e-21) mini zinc finger protein [Solanum lycopersicum];; (*TAIR) AT3G28917.1 (e_value=8e-18) | Symbols: MIF2 | mini zinc finger 2 | chr3:10925014-10925316 FORWARD LENGTH=100;; (*ITAG) Solyc02g087970.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:44783677-44783949 transcript_region:SL2.40ch02:44783677..44783949+ go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00037127g0001.1 protein AED:0.70 eAED:0.78 QI:0|0|0|0.5|1|1|2|0|91; (*GB) gi|37223500|gb|AAQ90287.1| (e_value=2e-25) beta-1,3-glucanase, acidic [Coffea arabica];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=4e-24) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT2G19440.1 (e_value=2e-26) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:8418164-8419806 REVERSE LENGTH=478;; (*ITAG) Solyc10g078510.1.1 (e_value=4e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59632402-59635099 transcript_region:SL2.40ch10:59632402..59635099+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00054473g0004.1 protein AED:0.12 eAED:0.12 QI:42|0.33|0.25|1|0.66|0.5|4|844|710; (*GB) gi|224092224|ref|XP_002309517.1| (e_value=8e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8BTI8|SRRM2_MOUSE (e_value=5e-18) Serine/arginine repetitive matrix protein 2 OS=Mus musculus GN=Srrm2 PE=1 SV=3;; (*TAIR) AT3G49601.1 (e_value=2e-45) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387504-18389279 REVERSE LENGTH=591;; (*ITAG) Solyc08g074440.2.1 (e_value=1e-75) genomic_reference:SL2.40ch08 gene_region:55720785-55723546 transcript_region:SL2.40ch08:55720785..55723546+ functional_description:"Pre-mRNA-splicing factor CWC21 (AHRD V1 *--- B2W2U4_PYRTR); contains Interpro domain(s) IPR013170 mRNA splicing factor, Cwf21 "; NbS00018698g0005.1 protein AED:0.31 eAED:0.31 QI:445|0.83|0.85|1|0.66|0.57|7|0|628; (*GB) gi|225428965|ref|XP_002263972.1| (e_value=3e-179) PREDICTED: uncharacterized protein LOC100242868 [Vitis vinifera];; (*TAIR) AT1G49890.1 (e_value=6e-151) | Symbols: QWRF2 | Family of unknown function (DUF566) | chr1:18470282-18473463 FORWARD LENGTH=659;; (*ITAG) Solyc01g107200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:86584568-86595138 transcript_region:SL2.40ch01:86584568..86595138- go_terms:GO:0006139 functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; GO:0006139 NbS00016029g0012.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.33|0.66|0|0.33|3|106|61 NbS00016029g0001.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|293; (*GB) gi|225430563|ref|XP_002262758.1| (e_value=2e-137) PREDICTED: uncharacterized protein LOC100257058 isoform 1 [Vitis vinifera];; (*TAIR) AT5G10750.1 (e_value=2e-134) | Symbols: | Protein of unknown function (DUF1336) | chr5:3399072-3399980 FORWARD LENGTH=302;; (*ITAG) Solyc08g068880.1.1 (e_value=6e-166) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55178060-55179007 transcript_region:SL2.40ch08:55178060..55179007- functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *-*- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00016029g0011.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.66|0|0|3|424|85 NbS00046550g0007.1 protein AED:0.20 eAED:0.21 QI:468|0.8|0.5|1|0.8|0.83|6|273|475; (*GB) gi|315272010|gb|ADU02586.1| (e_value=0.0) pectate lyase-like protein 1 [Vitis vinifera];; (*SWP) sp|Q93Z04|PLY13_ARATH (e_value=5e-170) Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1;; (*TAIR) AT5G04310.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr5:1203356-1207352 REVERSE LENGTH=518;; (*ITAG) Solyc05g055510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64276549-64279462 transcript_region:SL2.40ch05:64276549..64279462+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7LXH4_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00046550g0008.1 protein AED:0.27 eAED:0.28 QI:0|1|0|1|1|1|2|0|475; (*GB) gi|225441169|ref|XP_002268629.1| (e_value=0.0) PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' alpha isoform [Vitis vinifera];; (*SWP) sp|O04376|2A5B_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1;; (*TAIR) AT3G09880.1 (e_value=0.0) | Symbols: ATB' BETA | Protein phosphatase 2A regulatory B subunit family protein | chr3:3029902-3031931 FORWARD LENGTH=499;; (*ITAG) Solyc10g083920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00037394g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|61; (*GB) gi|23507177|gb|AAN38002.1| (e_value=1e-17) LEA1-like protein [Capsicum annuum];; (*ITAG) Solyc10g011900.2.1 (e_value=4e-22) genomic_reference:SL2.40ch10 gene_region:4183524-4185077 transcript_region:SL2.40ch10:4183524..4185077- go_terms:GO:0009269 functional_description:"Late embryogenesis abundant protein (AHRD V1 **-- B5TV69_CAMSI); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00027818g0008.1 protein AED:0.07 eAED:0.07 QI:118|0.8|0.83|1|1|0.83|6|182|287; (*GB) gi|9885799|gb|AAG01532.1|AF289465_1 (e_value=2e-172) cyclin-dependent kinase B1-1 [Nicotiana tabacum];; (*SWP) sp|Q38774|CDC2C_ANTMA (e_value=4e-153) Cell division control protein 2 homolog C OS=Antirrhinum majus GN=CDC2C PE=2 SV=1;; (*TAIR) AT2G38620.2 (e_value=3e-149) | Symbols: CDKB1;2 | cyclin-dependent kinase B1;2 | chr2:16152551-16153866 FORWARD LENGTH=311;; (*ITAG) Solyc10g074720.1.1 (e_value=1e-169) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57679788-57683020 transcript_region:SL2.40ch10:57679788..57683020+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00027818g0005.1 protein AED:0.17 eAED:0.21 QI:112|0|0.5|1|0|0|2|0|167; (*GB) gi|255582050|ref|XP_002531822.1| (e_value=2e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G54200.1 (e_value=2e-16) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235;; (*ITAG) Solyc10g074730.1.1 (e_value=3e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57686095-57687851 transcript_region:SL2.40ch10:57686095..57687851+ functional_description:"Harpin-induced 1 (AHRD V1 ***- Q1STP6_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00055226g0002.1 protein AED:0.13 eAED:0.14 QI:0|0.83|0.71|1|1|1|7|275|761; (*GB) gi|224121474|ref|XP_002318591.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q39017|DGK1_ARATH (e_value=0.0) Diacylglycerol kinase 1 OS=Arabidopsis thaliana GN=DGK1 PE=1 SV=2;; (*TAIR) AT5G07920.1 (e_value=0.0) | Symbols: DGK1, ATDGK1 | diacylglycerol kinase1 | chr5:2525197-2528396 REVERSE LENGTH=728;; (*ITAG) Solyc03g115370.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59148331-59155113 transcript_region:SL2.40ch03:59148331..59155113+ go_terms:GO:0004143 functional_description:"Diacylglycerol kinase 1 (AHRD V1 **** A8QM12_MAIZE); contains Interpro domain(s) IPR000756 Diacylglycerol kinase accessory region "; GO:0004143 NbS00055226g0005.1 protein AED:0.27 eAED:0.27 QI:136|1|1|1|1|1|4|470|143; (*GB) gi|82623403|gb|ABB87116.1| (e_value=6e-81) 40S ribosomal protein S19-like [Solanum tuberosum];; (*SWP) sp|Q9FNP8|RS193_ARATH (e_value=2e-73) 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2 SV=1;; (*TAIR) AT5G61170.1 (e_value=1e-74) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc03g115360.2.1 (e_value=8e-85) genomic_reference:SL2.40ch03 gene_region:59143720-59146034 transcript_region:SL2.40ch03:59143720..59146034+ go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00028225g0011.1 protein AED:0.09 eAED:0.10 QI:375|0.62|0.44|1|0.5|0.55|9|0|921; (*GB) gi|225438442|ref|XP_002275036.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249111 [Vitis vinifera];; (*SWP) sp|Q55GJ2|IREA_DICDI (e_value=3e-72) Probable serine/threonine-protein kinase ireA OS=Dictyostelium discoideum GN=ireA PE=3 SV=1;; (*TAIR) AT2G17520.1 (e_value=0.0) | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclease/protein kinase IRE1-like | chr2:7617504-7620929 FORWARD LENGTH=841;; (*ITAG) Solyc02g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40752059-40759503 transcript_region:SL2.40ch02:40752059..40759503+ go_terms:GO:0006468,GO:0006397 functional_description:"Serine threonine-protein kinase (AHRD V1 *-*- Q16QF5_AEDAE); contains Interpro domain(s) IPR010513 Ribonuclease L "; GO:0006468,GO:0006397 NbS00028225g0010.1 protein AED:0.13 eAED:0.13 QI:708|1|0.85|1|1|0.85|7|0|936; (*GB) gi|357933583|dbj|BAL15058.1| (e_value=0.0) glutamate receptor 3.5 [Solanum lycopersicum];; (*SWP) sp|Q84W41|GLR36_ARATH (e_value=0.0) Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1;; (*TAIR) AT3G51480.1 (e_value=0.0) | Symbols: ATGLR3.6, GLR3.6 | glutamate receptor 3.6 | chr3:19101256-19104681 FORWARD LENGTH=903;; (*ITAG) Solyc02g082480.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40759691-40764456 transcript_region:SL2.40ch02:40759691..40764456- go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00000049g0012.1 protein AED:0.05 eAED:0.05 QI:293|1|1|1|0.85|0.75|8|298|319; (*GB) gi|225454722|ref|XP_002272266.1| (e_value=6e-141) PREDICTED: uncharacterized protein LOC100263053 [Vitis vinifera];; (*TAIR) AT1G65020.1 (e_value=4e-131) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319;; (*ITAG) Solyc03g097180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52943951-52951087 transcript_region:SL2.40ch03:52943951..52951087- functional_description:"(RAP Annotation release2) NERD domain containing protein (AHRD V1 ***- Q336N9_ORYSJ); contains Interpro domain(s) IPR011528 NERD "; NbS00000049g0010.1 protein AED:0.11 eAED:0.13 QI:0|1|0|1|1|0.5|2|0|982; (*GB) gi|255558081|ref|XP_002520069.1| (e_value=1e-159) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9LFE4|Y5673_ARATH (e_value=7e-97) WEB family protein At5g16730, chloroplastic OS=Arabidopsis thaliana GN=At5g16730 PE=1 SV=1;; (*TAIR) AT5G16730.1 (e_value=6e-98) | Symbols: | Plant protein of unknown function (DUF827) | chr5:5497890-5500775 FORWARD LENGTH=853;; (*ITAG) Solyc03g097190.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52952215-52956621 transcript_region:SL2.40ch03:52952215..52956621- functional_description:"Cingulin-like (AHRD V1 *--- Q6Z7G3_ORYSJ)"; NbS00000049g0007.1 protein AED:0.22 eAED:0.29 QI:124|0.33|0.75|1|0.66|0.5|4|449|119; (*GB) gi|356543302|ref|XP_003540101.1| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100775288 [Glycine max];; (*TAIR) AT1G65000.1 (e_value=6e-37) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38060.1); Has 49 Blast hits to 49 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:24147156-24148373 FORWARD LENGTH=83;; (*ITAG) Solyc03g097200.2.1 (e_value=2e-46) genomic_reference:SL2.40ch03 gene_region:52965596-52970000 transcript_region:SL2.40ch03:52965596..52970000- functional_description:"Unknown Protein (AHRD V1)"; NbS00000049g0013.1 protein AED:0.05 eAED:0.05 QI:124|0.6|0.66|1|0.6|0.5|6|249|295; (*GB) gi|255558075|ref|XP_002520066.1| (e_value=2e-109) cinnamoyl-CoA reductase, putative [Ricinus communis];; (*SWP) sp|P51102|DFRA_ARATH (e_value=5e-20) Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2;; (*TAIR) AT2G23910.1 (e_value=2e-66) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:10177902-10179789 FORWARD LENGTH=304;; (*ITAG) Solyc03g097170.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52940498-52943588 transcript_region:SL2.40ch03:52940498..52943588+ go_terms:GO:0004022 functional_description:"Cinnamoyl-CoA reductase-like protein (AHRD V1 ***- Q9M0B3_ARATH); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022 NbS00000049g0011.1 protein AED:0.86 eAED:1.00 QI:0|0|0|1|0|0|2|0|73 NbS00026646g0002.1 protein AED:0.26 eAED:0.26 QI:0|1|0.66|1|1|1|3|281|301; (*GB) gi|296080914|emb|CBI18744.3| (e_value=1e-128) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6ZMB5|T184A_HUMAN (e_value=4e-28) Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1;; (*TAIR) AT3G05940.1 (e_value=4e-128) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=4e-150) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00026646g0007.1 protein AED:0.65 eAED:0.66 QI:0|0|0|0.5|0|0.5|2|0|59 NbS00035912g0012.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|0|838; (*GB) gi|225446819|ref|XP_002279329.1| (e_value=0.0) PREDICTED: conserved oligomeric Golgi complex subunit 5 [Vitis vinifera];; (*SWP) sp|Q9UP83|COG5_HUMAN (e_value=7e-103) Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3;; (*TAIR) AT1G67930.1 (e_value=0.0) | Symbols: | Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832;; (*ITAG) Solyc10g007720.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1967084-1974413 transcript_region:SL2.40ch10:1967084..1974413- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 5 (AHRD V1 ***- COG5_HUMAN); contains Interpro domain(s) IPR019465 Conserved oligomeric Golgi complex, subunit 5 "; GO:0005515 NbS00035912g0014.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0.5|2|0|231; (*GB) gi|359494191|ref|XP_002265616.2| (e_value=3e-30) PREDICTED: uncharacterized protein LOC100248044 [Vitis vinifera];; (*TAIR) AT5G04690.1 (e_value=8e-21) | Symbols: | Ankyrin repeat family protein | chr5:1349781-1352525 REVERSE LENGTH=625;; (*ITAG) Solyc05g041590.2.1 (e_value=1e-46) genomic_reference:SL2.40ch05 gene_region:51484839-51486329 transcript_region:SL2.40ch05:51484839..51486329+ go_terms:GO:0005515 functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9LZ27_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00035912g0015.1 protein AED:0.28 eAED:0.40 QI:669|0.16|0.42|1|0.33|0.57|7|0|241; (*GB) gi|225464352|ref|XP_002263244.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100265216 [Vitis vinifera];; (*ITAG) Solyc05g041580.1.1 (e_value=9e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:51463194-51466137 transcript_region:SL2.40ch05:51463194..51466137+ functional_description:"Genomic DNA chromosome 5 P1 clone MIK22 (AHRD V1 **-- Q9FFL9_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00035912g0013.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|0|0|2|0|372; (*GB) gi|224062677|ref|XP_002300872.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q680C0|GDL62_ARATH (e_value=5e-37) GDSL esterase/lipase At4g10955 OS=Arabidopsis thaliana GN=At4g10955 PE=2 SV=1;; (*TAIR) AT5G50890.1 (e_value=2e-170) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:20702684-20704235 FORWARD LENGTH=408;; (*ITAG) Solyc10g007710.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1960324-1964209 transcript_region:SL2.40ch10:1960324..1964209+ functional_description:"Lipase (Class 3)-like protein (AHRD V1 ***- Q943F9_ORYSJ)"; NbS00054482g0004.1 protein AED:0.11 eAED:0.11 QI:20|0.86|0.81|1|0.93|0.93|16|0|949; (*GB) gi|225456711|ref|XP_002274102.1| (e_value=0.0) PREDICTED: ABC transporter A family member 2 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84K47|AB2A_ARATH (e_value=0.0) ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1;; (*TAIR) AT3G47730.1 (e_value=0.0) | Symbols: ATATH1, ATH1, ABCA2 | ATP-binding cassette A2 | chr3:17594342-17598828 REVERSE LENGTH=983;; (*ITAG) Solyc06g070940.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39950899-39956171 transcript_region:SL2.40ch06:39950899..39956171+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00013776g0016.1 protein AED:0.21 eAED:0.21 QI:176|0.66|0.5|1|0.55|0.4|10|199|598; (*GB) gi|12539609|gb|AAG59584.1|AF229926_1 (e_value=0.0) pathogen-inducible alpha-dioxygenase [Nicotiana attenuata];; (*TAIR) AT3G01420.1 (e_value=0.0) | Symbols: ALPHA-DOX1, DOX1, DIOX1, PADOX-1 | Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639;; (*ITAG) Solyc02g087090.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44190237-44193102 transcript_region:SL2.40ch02:44190237..44193102+ go_terms:GO:0016165 functional_description:"Prostaglandin G/H synthase 2 (AHRD V1 **-- PGH2_CHICK); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016165 NbS00013776g0013.1 protein AED:0.27 eAED:0.27 QI:96|0.8|1|1|0.4|0.33|6|303|346; (*GB) gi|147778870|emb|CAN62735.1| (e_value=3e-132) hypothetical protein VITISV_027749 [Vitis vinifera];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=2e-38) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT3G28050.1 (e_value=7e-125) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367;; (*ITAG) Solyc02g087060.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44168265-44171706 transcript_region:SL2.40ch02:44168265..44171706+ functional_description:"Nodulin MtN21 family protein (AHRD V1 ***- D7LPP0_ARALY)"; NbS00013776g0015.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.33|1|0|0|3|261|91 NbS00013776g0010.1 protein AED:0.32 eAED:0.32 QI:9|1|0.66|1|0.5|0.33|3|0|164; (*GB) gi|12539609|gb|AAG59584.1|AF229926_1 (e_value=8e-103) pathogen-inducible alpha-dioxygenase [Nicotiana attenuata];; (*TAIR) AT3G01420.1 (e_value=4e-76) | Symbols: ALPHA-DOX1, DOX1, DIOX1, PADOX-1 | Peroxidase superfamily protein | chr3:159689-162726 REVERSE LENGTH=639;; (*ITAG) Solyc02g087090.2.1 (e_value=3e-100) genomic_reference:SL2.40ch02 gene_region:44190237-44193102 transcript_region:SL2.40ch02:44190237..44193102+ go_terms:GO:0016165 functional_description:"Prostaglandin G/H synthase 2 (AHRD V1 **-- PGH2_CHICK); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016165 NbS00013776g0012.1 protein AED:0.09 eAED:0.10 QI:0|0.66|0.5|1|0.33|0.25|4|0|427; (*GB) gi|255552672|ref|XP_002517379.1| (e_value=4e-147) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G28150.1 (e_value=7e-125) | Symbols: TBL22 | TRICHOME BIREFRINGENCE-LIKE 22 | chr3:10471960-10473735 REVERSE LENGTH=414;; (*ITAG) Solyc02g087120.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:44203005-44205498 transcript_region:SL2.40ch02:44203005..44205498- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q67V99_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00052621g0008.1 protein AED:0.27 eAED:0.27 QI:0|0.6|0.54|1|0.5|0.54|11|226|397; (*GB) gi|371782085|emb|CCE46056.1| (e_value=0.0) 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Nicotiana tabacum];; (*SWP) sp|D3DFG8|PSPA_HYDTT (e_value=9e-16) Phosphoserine phosphatase 1 OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) GN=pspA PE=1 SV=1;; (*TAIR) AT5G22620.2 (e_value=5e-153) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=482;; (*ITAG) Solyc06g074510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:42490467-42495114 transcript_region:SL2.40ch06:42490467..42495114- go_terms:GO:0008152 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 (AHRD V1 *-*- GPMA2_GLOVI); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00052621g0007.1 protein AED:0.42 eAED:0.55 QI:0|0|0.33|1|0.5|0.66|3|15|160; (*GB) gi|371782085|emb|CCE46056.1| (e_value=3e-84) 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Nicotiana tabacum];; (*TAIR) AT5G22620.3 (e_value=9e-38) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=460;; (*ITAG) Solyc06g074510.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:42490467-42495114 transcript_region:SL2.40ch06:42490467..42495114- go_terms:GO:0008152 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 (AHRD V1 *-*- GPMA2_GLOVI); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbC26011445g0001.1 protein AED:0.14 eAED:0.18 QI:0|0|0|1|1|1|2|0|200; (*GB) gi|297745774|emb|CBI15830.3| (e_value=1e-11) unnamed protein product [Vitis vinifera]; NbS00011794g0008.1 protein AED:0.00 eAED:0.00 QI:46|1|1|1|0.6|0.83|6|256|192; (*GB) gi|356536234|ref|XP_003536644.1| (e_value=1e-45) PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max];; (*ITAG) Solyc05g008420.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00011794g0007.1 protein AED:0.24 eAED:0.57 QI:0|0.33|0|1|1|0.75|4|0|161; (*GB) gi|356536234|ref|XP_003536644.1| (e_value=3e-35) PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max];; (*ITAG) Solyc05g008420.2.1 (e_value=4e-35) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00018564g0008.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|1|1|2|0|109 NbS00018564g0007.1 protein AED:0.27 eAED:0.39 QI:0|0|0|1|1|1|2|0|101 NbS00054137g0005.1 protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|341; (*GB) gi|225456635|ref|XP_002270193.1| (e_value=5e-171) PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q3MI00|DNJB1_BOVIN (e_value=8e-74) DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3;; (*TAIR) AT3G47940.1 (e_value=4e-147) | Symbols: | DNAJ heat shock family protein | chr3:17688232-17689402 REVERSE LENGTH=350;; (*ITAG) Solyc06g071110.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40083683-40090619 transcript_region:SL2.40ch06:40083683..40090619- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 3 (AHRD V1 ***- DNAJ3_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00027191g0004.1 protein AED:0.25 eAED:0.25 QI:0|0.8|0.5|1|1|1|6|469|391; (*GB) gi|147780878|emb|CAN68249.1| (e_value=0.0) hypothetical protein VITISV_020126 [Vitis vinifera];; (*SWP) sp|Q94KT8|COBRA_ARATH (e_value=0.0) Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1;; (*TAIR) AT5G60920.1 (e_value=0.0) | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:24511466-24513932 REVERSE LENGTH=456;; (*ITAG) Solyc02g065770.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31490287-31494371 transcript_region:SL2.40ch02:31490287..31494371- functional_description:"COBRA-like protein 4 (AHRD V1 ***- B6SST3_MAIZE); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00050038g0006.1 protein AED:0.04 eAED:0.04 QI:109|1|1|1|1|1|7|237|293; (*GB) gi|297745741|emb|CBI15797.3| (e_value=2e-102) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FHB2|Y5828_ARATH (e_value=4e-67) Putative B3 domain-containing protein At5g58280 OS=Arabidopsis thaliana GN=At5g58280 PE=3 SV=1;; (*TAIR) AT5G58280.1 (e_value=3e-68) | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:23567338-23568670 FORWARD LENGTH=273;; (*ITAG) Solyc06g007530.2.1 (e_value=7e-147) genomic_reference:SL2.40ch06 gene_region:1515845-1518702 transcript_region:SL2.40ch06:1515845..1518702- go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os05g0481400 (AHRD V1 ***- Y5814_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00050038g0007.1 protein AED:0.06 eAED:0.06 QI:0|0.66|0.75|0.75|1|1|4|380|221; (*GB) gi|254212161|gb|ACT65738.1| (e_value=1e-161) QM [Nicotiana benthamiana];; (*SWP) sp|P93847|RL10_SOLME (e_value=3e-156) 60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1;; (*TAIR) AT1G26910.1 (e_value=2e-142) | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321709-9322813 FORWARD LENGTH=221;; (*ITAG) Solyc06g007520.2.1 (e_value=5e-161) genomic_reference:SL2.40ch06 gene_region:1513302-1514864 transcript_region:SL2.40ch06:1513302..1514864+ go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L10 (AHRD V1 ***- A8IZK3_CHLRE); contains Interpro domain(s) IPR001197 Ribosomal protein L10e "; GO:0003735,GO:0005515 NbS00057564g0006.1 protein AED:0.22 eAED:0.22 QI:0|1|0.9|1|0.88|0.9|10|362|340; (*GB) gi|350537177|ref|NP_001234027.1| (e_value=0.0) spe4 protein [Solanum lycopersicum];; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=0.0) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.2 (e_value=0.0) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591070 REVERSE LENGTH=332;; (*ITAG) Solyc08g061970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:47399954-47404859 transcript_region:SL2.40ch08:47399954..47404859+ go_terms:GO:0004766 functional_description:"Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0004766 NbS00057564g0002.1 protein AED:0.00 eAED:0.00 QI:63|0|0.5|1|0|0.5|2|217|119; (*GB) gi|255546007|ref|XP_002514063.1| (e_value=1e-34) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G06520.1 (e_value=8e-19) | Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116;; (*ITAG) Solyc05g025600.1.1 (e_value=3e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:34412777-34413112 transcript_region:SL2.40ch05:34412777..34413112- go_terms:GO:0016020 functional_description:"Chloroplast photosystem II subunit X (Fragment) (AHRD V1 ***- B1PPX5_9MYRT); contains Interpro domain(s) IPR009518 Photosystem II protein PsbX "; GO:0016020 NbS00028332g0015.1 protein AED:0.11 eAED:0.11 QI:79|1|1|1|0.2|0.16|6|1094|189 NbS00028332g0013.1 protein AED:0.16 eAED:0.16 QI:0|0.88|0.7|1|0.88|0.8|10|327|815; (*GB) gi|359490401|ref|XP_002279763.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265879 [Vitis vinifera];; (*SWP) sp|Q8W234|SEUSS_ARATH (e_value=1e-98) Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU PE=1 SV=1;; (*TAIR) AT5G62090.2 (e_value=1e-162) | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816;; (*ITAG) Solyc03g026190.2.1 (e_value=9e-172) genomic_reference:SL2.40ch03 gene_region:7965135-7970790 transcript_region:SL2.40ch03:7965135..7970790- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00028332g0011.1 protein AED:0.26 eAED:0.28 QI:36|1|0.8|1|0.75|0.8|5|811|353; (*GB) gi|113205286|gb|ABI34327.1| (e_value=6e-169) Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum];; (*SWP) sp|P92965|RSP40_ARATH (e_value=7e-90) Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2;; (*TAIR) AT4G25500.4 (e_value=5e-91) | Symbols: RSP35, RS40, At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13025168-13027243 FORWARD LENGTH=350;; (*ITAG) Solyc11g072340.1.1 (e_value=8e-173) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52633337-52636148 transcript_region:SL2.40ch11:52633337..52636148+ go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor (AHRD V1 **-- D8L816_9POAL); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00003439g0003.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.33|0|0.66|3|0|80; (*GB) gi|390132082|gb|AFL55396.1| (e_value=9e-20) ADP-glucose pyrophosphorylase large subunit 1 [Ipomoea batatas];; (*SWP) sp|Q00081|GLGL1_SOLTU (e_value=6e-19) Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1;; (*TAIR) AT2G21590.2 (e_value=4e-19) | Symbols: APL4 | Glucose-1-phosphate adenylyltransferase family protein | chr2:9239362-9242150 FORWARD LENGTH=523;; (*ITAG) Solyc01g109790.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:88397300-88401933 transcript_region:SL2.40ch01:88397300..88401933- go_terms:GO:0008878 functional_description:"Glucose-1-phosphate adenylyltransferase (AHRD V1 **** Q15I66_SOLLC); contains Interpro domain(s) IPR011831 Glucose-1-phosphate adenylyltransferase IPR005836 ADP-glucose pyrophosphorylase, conserved site "; GO:0008878 NbS00005991g0005.1 protein AED:0.07 eAED:0.09 QI:1|0.25|0.11|0.55|0.75|0.55|9|0|1552; (*GB) gi|255566446|ref|XP_002524208.1| (e_value=0.0) Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=0.0) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=0.0) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc02g076720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36422621-36428170 transcript_region:SL2.40ch02:36422621..36428170- go_terms:GO:0004642 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 **** A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0004642 NbS00048550g0004.1 protein AED:0.00 eAED:0.00 QI:89|1|1|1|1|1|4|285|231; (*GB) gi|2995953|gb|AAC08402.1| (e_value=1e-52) glutaredoxin I [Mesembryanthemum crystallinum];; (*SWP) sp|Q6H628|GRXS6_ORYSJ (e_value=2e-49) Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1;; (*TAIR) AT1G77370.1 (e_value=1e-45) | Symbols: | Glutaredoxin family protein | chr1:29073916-29074642 FORWARD LENGTH=130;; (*ITAG) Solyc02g084660.2.1 (e_value=9e-99) genomic_reference:SL2.40ch02 gene_region:42327854-42330617 transcript_region:SL2.40ch02:42327854..42330617+ go_terms:GO:0045454 functional_description:"Glutaredoxin I (AHRD V1 *-*- O65169_MESCR); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0045454 NbS00002822g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|115; (*GB) gi|93280156|gb|ABF06706.1| (e_value=2e-23) UP-9A [Nicotiana tabacum];; (*ITAG) Solyc03g096780.1.1 (e_value=2e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:52568046-52568387 transcript_region:SL2.40ch03:52568046..52568387- functional_description:"Unknown Protein (AHRD V1)"; NbS00048834g0004.1 protein AED:0.06 eAED:0.06 QI:122|1|0.83|1|0.6|0.66|6|0|228; (*GB) gi|225433227|ref|XP_002281958.1| (e_value=2e-107) PREDICTED: uncharacterized protein LOC100249441 [Vitis vinifera];; (*TAIR) AT3G23530.1 (e_value=5e-99) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8437472-8442597 FORWARD LENGTH=867;; (*ITAG) Solyc09g090510.2.1 (e_value=1e-126) genomic_reference:SL2.40ch09 gene_region:65359652-65368759 transcript_region:SL2.40ch09:65359652..65368759+ go_terms:GO:0008610 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 *-*- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0008610 NbS00016039g0001.1 protein AED:0.24 eAED:0.24 QI:0|0.6|0.5|1|1|1|6|0|375; (*GB) gi|27529856|dbj|BAC53943.1| (e_value=2e-105) DnaJ homolog [Nicotiana tabacum];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=3e-98) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=6e-93) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc11g006460.1.1 (e_value=7e-114) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1149792-1152899 transcript_region:SL2.40ch11:1149792..1152899- go_terms:GO:0006457,GO:0031072 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00016039g0005.1 protein AED:0.01 eAED:0.02 QI:0|1|0|1|0|0|2|0|137; (*GB) gi|255546749|ref|XP_002514433.1| (e_value=6e-35) Cucumber peeling cupredoxin, putative [Ricinus communis];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=1e-19) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=9e-19) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc11g006440.1.1 (e_value=2e-68) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1139421-1140172 transcript_region:SL2.40ch11:1139421..1140172+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6UB13_MAIZE); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00057097g0002.1 protein AED:0.35 eAED:0.36 QI:0|0.33|0.5|1|0.66|0.75|4|363|104; (*ITAG) Solyc10g008870.2.1 (e_value=8e-15) genomic_reference:SL2.40ch10 gene_region:2917954-2919487 transcript_region:SL2.40ch10:2917954..2919487+ go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor 1 homolog (AHRD V1 **** C1C367_9MAXI); contains Interpro domain(s) IPR007808 Protein of unknown function DUF701, zinc-binding putative "; GO:0005515,GO:0016944 NbS00009230g0005.1 protein AED:0.31 eAED:0.36 QI:0|0.88|0.9|1|1|1|10|211|388; (*GB) gi|224115534|ref|XP_002332158.1| (e_value=2e-178) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94F00|IMPL1_ARATH (e_value=4e-174) Phosphatase IMPL1, chloroplastic OS=Arabidopsis thaliana GN=IMPL1 PE=1 SV=2;; (*TAIR) AT1G31190.1 (e_value=3e-175) | Symbols: IMPL1 | myo-inositol monophosphatase like 1 | chr1:11144861-11146800 FORWARD LENGTH=371;; (*ITAG) Solyc02g069010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:33538178-33545772 transcript_region:SL2.40ch02:33538178..33545772+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7KK98_ARALY); contains Interpro domain(s) IPR000760 Inositol monophosphatase "; GO:0008934 NbS00009230g0008.1 protein AED:0.33 eAED:0.33 QI:144|1|0.66|1|1|1|3|0|262; (*GB) gi|297737969|emb|CBI27170.3| (e_value=4e-94) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81865|P2A01_ARATH (e_value=4e-62) Protein PHLOEM PROTEIN 2-LIKE A1 OS=Arabidopsis thaliana GN=PP2A1 PE=2 SV=1;; (*TAIR) AT4G19840.1 (e_value=3e-63) | Symbols: ATPP2-A1, ATPP2A-1, PP2-A1 | phloem protein 2-A1 | chr4:10774336-10775701 FORWARD LENGTH=246;; (*ITAG) Solyc02g069020.2.1 (e_value=4e-175) genomic_reference:SL2.40ch02 gene_region:33549370-33551904 transcript_region:SL2.40ch02:33549370..33551904- go_terms:GO:0030246 functional_description:"Phloem protein 2 (AHRD V1 **-- D0R6I5_MALDO)"; GO:0030246 NbS00010246g0010.1 protein AED:0.09 eAED:0.09 QI:0|1|0.5|1|1|1|4|0|274; (*GB) gi|302142821|emb|CBI20116.3| (e_value=8e-122) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G78710.1 (e_value=9e-117) | Symbols: TBL42 | TRICHOME BIREFRINGENCE-LIKE 42 | chr1:29602708-29604557 FORWARD LENGTH=359;; (*ITAG) Solyc12g044450.1.1 (e_value=1e-175) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44875217-44878764 transcript_region:SL2.40ch12:44875217..44878764+ functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 **-- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00010246g0011.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0|1|0.5|0.33|3|0|799; (*GB) gi|225461808|ref|XP_002285634.1| (e_value=0.0) PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera];; (*SWP) sp|Q9SYM5|RHM1_ARATH (e_value=0.0) Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1;; (*TAIR) AT1G78570.1 (e_value=0.0) | Symbols: RHM1, ROL1, ATRHM1 | rhamnose biosynthesis 1 | chr1:29550110-29552207 FORWARD LENGTH=669;; (*ITAG) Solyc10g007480.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:1823864-1827007 transcript_region:SL2.40ch10:1823864..1827007- go_terms:GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-*- B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0010280 NbS00045022g0001.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|156; (*GB) gi|225423955|ref|XP_002282387.1| (e_value=3e-37) PREDICTED: uncharacterized protein LOC100268142 [Vitis vinifera];; (*TAIR) AT1G13360.1 (e_value=1e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:4577229-4577813 REVERSE LENGTH=194;; (*ITAG) Solyc05g009520.1.1 (e_value=3e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch05 gene_region:3719747-3720274 transcript_region:SL2.40ch05:3719747..3720274- functional_description:"Genomic DNA chromosome 3 P1 clone MPE11 (AHRD V1 ***- Q9LUA5_ARATH)"; NbS00052811g0006.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.62|1|1|1|8|0|615; (*GB) gi|356501308|ref|XP_003519467.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT8-like [Glycine max];; (*SWP) sp|Q940J9|PMT8_ARATH (e_value=0.0) Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1;; (*TAIR) AT1G04430.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623;; (*ITAG) Solyc03g005600.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:438634-441628 transcript_region:SL2.40ch03:438634..441628+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00028345g0017.1 protein AED:0.08 eAED:0.08 QI:0|1|0.90|1|0.8|0.81|11|389|555; (*GB) gi|225434600|ref|XP_002279214.1| (e_value=0.0) PREDICTED: protein DAMAGED DNA-BINDING 2 [Vitis vinifera];; (*SWP) sp|Q6NQ88|DDB2_ARATH (e_value=0.0) Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana GN=DDB2 PE=1 SV=1;; (*TAIR) AT5G58760.1 (e_value=0.0) | Symbols: DDB2 | damaged DNA binding 2 | chr5:23730741-23733606 REVERSE LENGTH=557;; (*ITAG) Solyc09g031610.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:22541832-22556046 transcript_region:SL2.40ch09:22541832..22556046+ go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat containing protein (AHRD V1 *--- B2WNS3_PYRTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00028345g0008.1 protein AED:0.22 eAED:0.22 QI:0|-1|0|1|-1|1|1|0|212; (*GB) gi|92896037|gb|ABE93043.1| (e_value=4e-57) Harpin-induced 1 [Medicago truncatula];; (*TAIR) AT3G54200.1 (e_value=1e-44) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235;; (*ITAG) Solyc09g031920.1.1 (e_value=1e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:24061911-24062513 transcript_region:SL2.40ch09:24061911..24062513- functional_description:"Harpin-induced 1 (AHRD V1 ***- Q1STP6_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00028345g0003.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|12003380|gb|AAG43547.1|AF211529_1 (e_value=3e-83) Avr9/Cf-9 rapidly elicited protein 31 [Nicotiana tabacum];; (*SWP) sp|Q09011|CAST_SOLTU (e_value=2e-74) Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G20780.1 (e_value=3e-73) | Symbols: CML42 | calmodulin like 42 | chr4:11133309-11133884 REVERSE LENGTH=191;; (*ITAG) Solyc10g074740.1.1 (e_value=3e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57697520-57698119 transcript_region:SL2.40ch10:57697520..57698119+ go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q9ATP2_CENCI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00028345g0001.1 protein AED:0.05 eAED:0.05 QI:1229|1|0.5|1|0|0|2|0|250; (*GB) gi|359481021|ref|XP_003632556.1| (e_value=7e-43) PREDICTED: unknown protein 1-like [Vitis vinifera];; (*ITAG) Solyc09g031900.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:24057943-24059342 transcript_region:SL2.40ch09:24057943..24059342+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028345g0015.1 protein AED:0.38 eAED:0.80 QI:51|0|0.25|0.5|0.66|0.5|4|0|157 NbS00061571g0003.1 protein AED:0.24 eAED:0.39 QI:0|0|0.5|1|1|1|2|152|74; (*GB) gi|225425746|ref|XP_002276549.1| (e_value=5e-25) PREDICTED: transcription factor bHLH135 [Vitis vinifera];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=3e-17) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT3G28857.1 (e_value=5e-23) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding family protein | chr3:10855781-10856313 REVERSE LENGTH=92;; (*ITAG) Solyc04g005660.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:428856-430139 transcript_region:SL2.40ch04:428856..430139- go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **** B6CG45_SOLPN); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00047069g0005.1 protein AED:0.31 eAED:0.31 QI:0|0.66|0.5|1|0.66|0.75|4|0|181; (*GB) gi|224101567|ref|XP_002312333.1| (e_value=2e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67620.1 (e_value=3e-43) | Symbols: | Lojap-related protein | chr1:25340585-25341770 FORWARD LENGTH=184;; (*ITAG) Solyc05g014650.2.1 (e_value=6e-88) genomic_reference:SL2.40ch05 gene_region:8649456-8653424 transcript_region:SL2.40ch05:8649456..8653424+ functional_description:"Iojap-like protein (AHRD V1 *-*- B5ZUF1_RHILW); contains Interpro domain(s) IPR004394 Iojap-related protein "; NbS00005000g0008.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.66|0.5|0.66|3|0|481; (*GB) gi|225452849|ref|XP_002283706.1| (e_value=9e-111) PREDICTED: dof zinc finger protein DOF5.2-like [Vitis vinifera];; (*SWP) sp|Q93ZL5|DOF52_ARATH (e_value=2e-69) Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2;; (*TAIR) AT5G39660.2 (e_value=2e-70) | Symbols: CDF2 | cycling DOF factor 2 | chr5:15878920-15880712 FORWARD LENGTH=457;; (*ITAG) Solyc05g007880.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2319572-2322236 transcript_region:SL2.40ch05:2319572..2322236- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00005000g0005.1 protein AED:0.56 eAED:0.56 QI:0|0|0|0.5|1|1|2|0|71; (*ITAG) Solyc05g007880.2.1 (e_value=3e-15) genomic_reference:SL2.40ch05 gene_region:2319572-2322236 transcript_region:SL2.40ch05:2319572..2322236- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00005000g0006.1 protein AED:0.23 eAED:0.40 QI:0|0|0|1|0|0|2|0|53; (*ITAG) Solyc12g044980.1.1 (e_value=8e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45800505-45800672 transcript_region:SL2.40ch12:45800505..45800672- functional_description:"Unknown Protein (AHRD V1)"; NbS00018599g0002.1 protein AED:0.19 eAED:0.26 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|374250711|gb|AEY99978.1| (e_value=3e-72) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q8RWL2|CDPKT_ARATH (e_value=6e-54) Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2;; (*TAIR) AT1G76040.2 (e_value=6e-55) | Symbols: CPK29 | calcium-dependent protein kinase 29 | chr1:28537743-28540448 FORWARD LENGTH=561;; (*ITAG) Solyc04g081910.2.1 (e_value=4e-67) genomic_reference:SL2.40ch04 gene_region:63365446-63370378 transcript_region:SL2.40ch04:63365446..63370378+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00021340g0001.1 protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|256; (*GB) gi|225447808|ref|XP_002267816.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100241880 [Vitis vinifera];; (*TAIR) AT3G45200.1 (e_value=2e-48) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64870.1); Has 95 Blast hits to 91 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16548828-16549730 REVERSE LENGTH=300;; (*ITAG) Solyc12g020130.1.1 (e_value=2e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:14136924-14137790 transcript_region:SL2.40ch12:14136924..14137790+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023090g0005.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|202; (*GB) gi|356555042|ref|XP_003545848.1| (e_value=8e-39) PREDICTED: probable aspartic protease At2g35615-like [Glycine max];; (*SWP) sp|Q766C3|NEP1_NEPGR (e_value=6e-24) Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1;; (*TAIR) AT5G33340.1 (e_value=1e-35) | Symbols: CDR1 | Eukaryotic aspartyl protease family protein | chr5:12594474-12595787 FORWARD LENGTH=437;; (*ITAG) Solyc01g081350.1.1 (e_value=9e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73093467-73094768 transcript_region:SL2.40ch01:73093467..73094768- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00022784g0004.1 protein AED:0.10 eAED:0.10 QI:0|0|0.25|1|0|0|4|0|185; (*GB) gi|225432876|ref|XP_002280020.1| (e_value=4e-53) PREDICTED: uncharacterized protein LOC100252711 [Vitis vinifera];; (*TAIR) AT5G43750.1 (e_value=7e-44) | Symbols: NDH18 | NAD(P)H dehydrogenase 18 | chr5:17580100-17581145 REVERSE LENGTH=212;; (*ITAG) Solyc09g083190.2.1 (e_value=2e-92) genomic_reference:SL2.40ch09 gene_region:64266291-64268554 transcript_region:SL2.40ch09:64266291..64268554+ functional_description:"Genomic DNA chromosome 5 P1 clone MQD19 (AHRD V1 ***- Q9FG89_ARATH)"; NbS00024249g0012.1 protein AED:0.26 eAED:0.29 QI:24|0.66|0.46|0.92|0.81|0.78|28|326|1650; (*GB) gi|359479745|ref|XP_002269478.2| (e_value=1e-162) PREDICTED: metal tolerance protein C1 [Vitis vinifera];; (*SWP) sp|Q8L725|MTPC1_ARATH (e_value=4e-144) Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1;; (*TAIR) AT2G47830.1 (e_value=3e-145) | Symbols: | Cation efflux family protein | chr2:19591094-19593973 REVERSE LENGTH=471;; (*ITAG) Solyc09g074690.2.1 (e_value=1e-133) genomic_reference:SL2.40ch09 gene_region:62014273-62019180 transcript_region:SL2.40ch09:62014273..62019180+ go_terms:GO:0006355,GO:0045449 functional_description:"LUMINIDEPENDENS-like protein (Fragment) (AHRD V1 ***- Q52ZP5_PEA); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00024249g0016.1 protein AED:0.11 eAED:0.11 QI:147|0.5|0.4|1|0.25|0.4|5|0|456; (*GB) gi|359479820|ref|XP_002269036.2| (e_value=4e-158) PREDICTED: zinc finger protein MAGPIE [Vitis vinifera];; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=1e-98) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1;; (*TAIR) AT1G03840.1 (e_value=8e-100) | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506;; (*ITAG) Solyc09g074780.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62085904-62089680 transcript_region:SL2.40ch09:62085904..62089680+ go_terms:GO:0005622 functional_description:"Zinc finger protein (AHRD V1 **-- Q764N7_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00009371g0002.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|1|1|2|0|324; (*GB) gi|296087863|emb|CBI35119.3| (e_value=2e-127) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22193|PUB4_ARATH (e_value=2e-27) U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3;; (*TAIR) AT1G08315.1 (e_value=9e-112) | Symbols: | ARM repeat superfamily protein | chr1:2620500-2621477 REVERSE LENGTH=325;; (*ITAG) Solyc01g096460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79309371-79310664 transcript_region:SL2.40ch01:79309371..79310664+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 4 (AHRD V1 **-- PUB4_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00031365g0009.1 protein AED:0.23 eAED:0.24 QI:0|0.75|0.4|1|0.5|0.6|5|507|404; (*GB) gi|297736856|emb|CBI26057.3| (e_value=3e-45) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G15820.1 (e_value=9e-30) | Symbols: | BEST Arabidopsis thaliana protein match is: embryo defective 1703 (TAIR:AT3G61780.1); Has 524 Blast hits to 443 proteins in 102 species: Archae - 0; Bacteria - 13; Metazoa - 196; Fungi - 37; Plants - 43; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink). | chr4:8992970-8995022 FORWARD LENGTH=460;; (*ITAG) Solyc01g080760.2.1 (e_value=1e-126) genomic_reference:SL2.40ch01 gene_region:72490432-72498057 transcript_region:SL2.40ch01:72490432..72498057- functional_description:"Unknown Protein (AHRD V1)"; NbS00031365g0010.1 protein AED:0.35 eAED:0.37 QI:0|1|0|1|0|0.5|2|0|322; (*GB) gi|297736856|emb|CBI26057.3| (e_value=5e-33) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g080760.2.1 (e_value=2e-137) genomic_reference:SL2.40ch01 gene_region:72490432-72498057 transcript_region:SL2.40ch01:72490432..72498057- functional_description:"Unknown Protein (AHRD V1)"; NbS00031365g0008.1 protein AED:0.15 eAED:0.15 QI:0|0.6|0.66|1|1|1|6|138|313; (*GB) gi|359477401|ref|XP_003631973.1| (e_value=1e-134) PREDICTED: protein FAM179B-like [Vitis vinifera];; (*TAIR) AT4G15830.1 (e_value=1e-100) | Symbols: | ARM repeat superfamily protein | chr4:8995285-8996548 REVERSE LENGTH=296;; (*ITAG) Solyc01g080750.2.1 (e_value=9e-159) genomic_reference:SL2.40ch01 gene_region:72488752-72490161 transcript_region:SL2.40ch01:72488752..72490161+ go_terms:GO:0005488 functional_description:"HEAT repeat family protein (AHRD V1 **-- B4FX70_MAIZE); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00030106g0002.1 protein AED:0.04 eAED:0.05 QI:0|0|0|1|1|1|3|0|421; (*GB) gi|225450421|ref|XP_002279030.1| (e_value=0.0) PREDICTED: protein notum homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q8R116|NOTUM_MOUSE (e_value=4e-21) Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2;; (*TAIR) AT5G26670.1 (e_value=0.0) | Symbols: | Pectinacetylesterase family protein | chr5:9318456-9320816 FORWARD LENGTH=416;; (*ITAG) Solyc10g038130.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:19661877-19666448 transcript_region:SL2.40ch10:19661877..19666448- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00018995g0014.1 protein AED:0.00 eAED:0.00 QI:435|1|0.83|1|0.6|0.66|6|0|312; (*GB) gi|296085356|emb|CBI29088.3| (e_value=2e-139) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2USI0|BST1_ASPOR (e_value=1e-29) GPI inositol-deacylase OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=bst1 PE=3 SV=2;; (*TAIR) AT3G27325.1 (e_value=6e-136) | Symbols: | hydrolases, acting on ester bonds | chr3:10096224-10102087 FORWARD LENGTH=1085;; (*ITAG) Solyc02g093770.2.1 (e_value=4e-179) genomic_reference:SL2.40ch02 gene_region:49064946-49077850 transcript_region:SL2.40ch02:49064946..49077850- go_terms:GO:0031227 functional_description:"GPI inositol-deacylase (AHRD V1 *-*- C5FP83_NANOT); contains Interpro domain(s) IPR012908 PGAP1-like "; GO:0031227 NbS00018995g0001.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|524; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=0.0) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=0.0) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=0.0) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc02g093800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49088997-49094293 transcript_region:SL2.40ch02:49088997..49094293- go_terms:GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0019901 NbS00018995g0010.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|243|461; (*GB) gi|82697975|gb|ABB89022.1| (e_value=0.0) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q8LED9|CXE16_ARATH (e_value=0.0) Probable carboxylesterase 16 OS=Arabidopsis thaliana GN=CXE16 PE=2 SV=1;; (*TAIR) AT5G14310.1 (e_value=0.0) | Symbols: AtCXE16, CXE16 | carboxyesterase 16 | chr5:4615592-4617422 FORWARD LENGTH=446;; (*ITAG) Solyc02g093790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49084876-49088035 transcript_region:SL2.40ch02:49084876..49088035- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU8_ACTDE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00001507g0012.1 protein AED:0.06 eAED:0.09 QI:0|1|0.9|1|0.88|0.8|10|638|358; (*GB) gi|255544664|ref|XP_002513393.1| (e_value=5e-135) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G16520.1 (e_value=4e-105) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648904-5650998 FORWARD LENGTH=325;; (*ITAG) Solyc07g066520.2.1 (e_value=2e-163) genomic_reference:SL2.40ch07 gene_region:65149420-65152954 transcript_region:SL2.40ch07:65149420..65152954- functional_description:"Os03g0659800 protein (Fragment) (AHRD V1 *-*- Q0DPV3_ORYSJ)"; NbS00001507g0011.1 protein AED:0.18 eAED:0.21 QI:0|0.66|0|1|0.33|0|4|0|262; (*GB) gi|224081437|ref|XP_002306410.1| (e_value=1e-82) predicted protein [Populus trichocarpa];; (*SWP) sp|Q32PZ3|UN45A_RAT (e_value=2e-13) Protein unc-45 homolog A OS=Rattus norvegicus GN=Unc45a PE=2 SV=1;; (*TAIR) AT1G56090.1 (e_value=1e-83) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:20977989-20979185 REVERSE LENGTH=272;; (*ITAG) Solyc07g066530.2.1 (e_value=4e-112) genomic_reference:SL2.40ch07 gene_region:65153760-65157585 transcript_region:SL2.40ch07:65153760..65157585- go_terms:GO:0005488 functional_description:"Mitochondrial import receptor subunit TOM34 (AHRD V1 *--- B5X380_SALSA); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00001507g0010.1 protein AED:0.15 eAED:0.22 QI:0|0.33|0.25|0.75|1|1|4|0|247; (*GB) gi|255544666|ref|XP_002513394.1| (e_value=1e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12890.1 (e_value=2e-30) | Symbols: ASML2 | activator of spomin::LUC2 | chr3:4099223-4100277 FORWARD LENGTH=251;; (*ITAG) Solyc07g066510.2.1 (e_value=3e-83) genomic_reference:SL2.40ch07 gene_region:65144957-65146322 transcript_region:SL2.40ch07:65144957..65146322- functional_description:"Zinc finger protein CONSTANS-LIKE 2 (AHRD V1 *--- B9MSS7_SOYBN); contains Interpro domain(s) IPR010402 CCT domain "; NbC24023801g0001.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|0|0|2|0|45; (*GB) gi|356572659|ref|XP_003554484.1| (e_value=7e-19) PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Glycine max];; (*SWP) sp|P23635|PP2A1_SCHPO (e_value=1e-19) Minor serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppa1 PE=2 SV=1;; (*TAIR) AT2G42500.3 (e_value=1e-20) | Symbols: PP2A-3 | protein phosphatase 2A-3 | chr2:17699029-17701226 REVERSE LENGTH=171;; (*ITAG) Solyc01g034020.2.1 (e_value=3e-20) genomic_reference:SL2.40ch01 gene_region:35699185-35710820 transcript_region:SL2.40ch01:35699185..35710820- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** A5AT05_VITVI); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00014829g0007.1 protein AED:0.11 eAED:0.14 QI:0|0.25|0.2|1|0|0.4|5|0|281; (*GB) gi|356561903|ref|XP_003549216.1| (e_value=2e-117) PREDICTED: peroxidase N-like [Glycine max];; (*SWP) sp|Q42517|PERN_ARMRU (e_value=2e-114) Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1;; (*TAIR) AT5G19890.1 (e_value=6e-111) | Symbols: | Peroxidase superfamily protein | chr5:6724372-6725877 REVERSE LENGTH=328;; (*ITAG) Solyc01g006310.2.1 (e_value=3e-159) genomic_reference:SL2.40ch01 gene_region:899147-902371 transcript_region:SL2.40ch01:899147..902371+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- D7LZC8_ARALY); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbC25064786g0003.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|257; (*GB) gi|5669151|gb|AAD46186.1| (e_value=3e-163) plasma membrane proton ATPase [Nicotiana plumbaginifolia];; (*SWP) sp|Q42556|PMA9_ARATH (e_value=8e-151) ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2;; (*TAIR) AT1G80660.1 (e_value=6e-152) | Symbols: AHA9, HA9 | H(+)-ATPase 9 | chr1:30316227-30319948 REVERSE LENGTH=954;; (*ITAG) Solyc03g117150.2.1 (e_value=7e-161) genomic_reference:SL2.40ch03 gene_region:60436921-60440907 transcript_region:SL2.40ch03:60436921..60440907+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00006206g0005.1 protein AED:0.18 eAED:0.18 QI:124|0.75|0.8|1|0.75|0.8|5|336|104; (*GB) gi|224097390|ref|XP_002310913.1| (e_value=1e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94C60|SPT42_ARATH (e_value=1e-49) Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1;; (*TAIR) AT5G63670.1 (e_value=9e-51) | Symbols: SPT42 | SPT4 homolog 2 | chr5:25488012-25489247 FORWARD LENGTH=116;; (*ITAG) Solyc04g008750.2.1 (e_value=3e-62) genomic_reference:SL2.40ch04 gene_region:2407781-2412048 transcript_region:SL2.40ch04:2407781..2412048- go_terms:GO:0046982 functional_description:"Transcription elongation factor SPT4 (AHRD V1 ***- B6TR90_MAIZE); contains Interpro domain(s) IPR009287 Transcription initiation Spt4 "; GO:0046982 NbS00000648g0008.1 protein AED:0.50 eAED:0.61 QI:0|0|0|1|1|1|2|0|111; (*GB) gi|111283601|gb|ABH09172.1| (e_value=5e-18) ATP synthase subunit 9 [Silene uniflora];; (*SWP) sp|Q07060|ATP9_PETSP (e_value=1e-13) ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1;; (*ITAG) ATMG01080.1 (e_value=2e-11) | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9 | chrM:278895-279152 FORWARD LENGTH=85; NbS00000648g0014.1 protein AED:0.63 eAED:0.63 QI:0|0|0|0.5|1|1|2|0|88; (*ITAG) Solyc11g056320.1.1 (e_value=9e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43097712-43098062 transcript_region:SL2.40ch11:43097712..43098062- functional_description:"Unknown Protein (AHRD V1)"; NbS00000648g0004.1 protein AED:0.63 eAED:0.66 QI:0|0|0|0.25|1|1|4|0|245; (*GB) gi|357436069|ref|XP_003588310.1| (e_value=8e-21) hypothetical protein MTR_1g005810 [Medicago truncatula];; (*ITAG) Solyc07g017930.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00000648g0033.1 protein AED:0.24 eAED:0.24 QI:0|0|0|0.33|1|1|3|0|203; (*GB) gi|57013904|ref|YP_173377.1| (e_value=2e-49) hypothetical protein NitaMp031 [Nicotiana tabacum]; NbS00000648g0040.1 protein AED:0.22 eAED:0.25 QI:0|0|0|0.75|0|0.25|4|0|217; (*GB) gi|57013948|ref|YP_173421.1| (e_value=7e-69) hypothetical protein NitaMp079 [Nicotiana tabacum];; (*ITAG) Solyc00g013100.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10664455-10664691 transcript_region:SL2.40ch00:10664455..10664691+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000648g0039.1 protein AED:0.28 eAED:0.35 QI:0|0.5|0.63|1|0.6|0.54|11|0|495; (*GB) gi|255572623|ref|XP_002527245.1| (e_value=1e-174) lyase, putative [Ricinus communis];; (*TAIR) AT1G09910.1 (e_value=3e-164) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc05g051350.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60767923-60775819 transcript_region:SL2.40ch05:60767923..60775819+ go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00000648g0042.1 protein AED:0.42 eAED:0.59 QI:0|0|0|0.66|0.5|0.33|3|0|124; (*GB) gi|57013895|ref|YP_173369.1| (e_value=2e-39) ribosomal protein L5 [Nicotiana tabacum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=4e-32) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=5e-31) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc09g050040.1.1 (e_value=7e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32152762-32153100 transcript_region:SL2.40ch09:32152762..32153100- go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 ***- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00000648g0041.1 protein AED:0.05 eAED:0.09 QI:0|0|0|1|0|0|3|0|173; (*GB) gi|57013929|ref|YP_173402.1| (e_value=3e-23) hypothetical protein NitaMp056 [Nicotiana tabacum];; (*SWP) sp|P08834|NU1M_CITLA (e_value=6e-22) NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1;; (*ITAG) ATMG01275.1 (e_value=2e-22) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325;; (*ITAG) Solyc00g013170.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10689137-10689346 transcript_region:SL2.40ch00:10689137..10689346+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000648g0038.1 protein AED:0.38 eAED:0.66 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|169159338|gb|ACA49171.1| (e_value=8e-13) photosystem II CP43 protein [Helminthostachys zeylanica];; (*SWP) sp|Q85AU0|PSBC_ANTFO (e_value=1e-13) Photosystem II CP43 chlorophyll apoprotein OS=Anthoceros formosae GN=psbC PE=2 SV=1;; (*ITAG) ATCG00280.1 (e_value=4e-14) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc00g230070.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19614385-19614648 transcript_region:SL2.40ch00:19614385..19614648- go_terms:GO:0016020 functional_description:"Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- D1L8N4_BRANA); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like "; GO:0016020 NbS00007196g0014.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0.4|1|0.25|0.2|5|265|379; (*GB) gi|356556563|ref|XP_003546594.1| (e_value=2e-134) PREDICTED: probable flavin-containing monooxygenase 1-like [Glycine max];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=1e-72) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=9e-74) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g007290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2018994-2022658 transcript_region:SL2.40ch07:2018994..2022658+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase 5 (AHRD V1 **** B5X0U9_SALSA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00028769g0004.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|1|1|3|347|406; (*GB) gi|30013681|gb|AAP03883.1| (e_value=0.0) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*SWP) sp|O80871|P2C25_ARATH (e_value=5e-135) Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1;; (*TAIR) AT2G30020.1 (e_value=4e-136) | Symbols: | Protein phosphatase 2C family protein | chr2:12814437-12815904 FORWARD LENGTH=396;; (*ITAG) Solyc06g007190.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00032847g0010.1 protein AED:0.06 eAED:0.06 QI:249|1|1|1|1|1|6|73|777; (*GB) gi|371917284|dbj|BAL44718.1| (e_value=0.0) SlArf/Xyl3 [Solanum lycopersicum];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=0.0) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072860.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57410087-57414435 transcript_region:SL2.40ch04:57410087..57414435- go_terms:GO:0009044 functional_description:"Beta-D-xylosidase (AHRD V1 **** Q8W011_HORVU); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbS00032847g0011.1 protein AED:0.17 eAED:0.17 QI:0|0|0|1|0.5|0.33|3|0|298; (*GB) gi|371917286|dbj|BAL44719.1| (e_value=5e-99) SlArf/Xyl4 [Solanum lycopersicum];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=4e-62) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=3e-63) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072850.2.1 (e_value=1e-101) genomic_reference:SL2.40ch04 gene_region:57401404-57407824 transcript_region:SL2.40ch04:57401404..57407824- go_terms:GO:0046556,GO:0009044 functional_description:"Alpha-L-arabinofuranosidase/beta-D-xylosidase (AHRD V1 **** D9D7L0_MALDO); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0046556,GO:0009044 NbS00005338g0022.1 protein AED:0.29 eAED:0.29 QI:38|0.85|0.5|1|0.71|0.87|8|0|291; (*GB) gi|225451439|ref|XP_002273907.1| (e_value=2e-160) PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera];; (*SWP) sp|Q8PSE5|HTPX2_METMA (e_value=8e-12) Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1;; (*TAIR) AT3G27110.2 (e_value=2e-151) | Symbols: | Peptidase family M48 family protein | chr3:9998006-9999892 FORWARD LENGTH=344;; (*ITAG) Solyc03g005000.2.1 (e_value=3e-169) genomic_reference:SL2.40ch03 gene_region:16712-19799 transcript_region:SL2.40ch03:16712..19799+ go_terms:GO:0016020 functional_description:"Peptidase M48 Ste24p (AHRD V1 ***- B6TA12_MAIZE); contains Interpro domain(s) IPR001915 Peptidase M48, Ste24p "; GO:0016020 NbS00005338g0015.1 protein AED:0.38 eAED:0.43 QI:0|0.5|0.6|1|0.75|0.8|5|20|176; (*GB) gi|77999240|gb|ABB16967.1| (e_value=5e-47) unknown [Solanum tuberosum];; (*SWP) sp|P37707|B2_DAUCA (e_value=2e-38) B2 protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT3G27090.1 (e_value=2e-46) | Symbols: | DCD (Development and Cell Death) domain protein | chr3:9990020-9991407 FORWARD LENGTH=296;; (*ITAG) Solyc02g094130.2.1 (e_value=3e-50) genomic_reference:SL2.40ch02 gene_region:49340142-49343204 transcript_region:SL2.40ch02:49340142..49343204- functional_description:"Genomic DNA chromosome 5 P1 clone MJC20 (AHRD V1 *--- Q9FHX9_ARATH); contains Interpro domain(s) IPR013089 Kelch related "; NbS00005338g0026.1 protein AED:0.13 eAED:0.13 QI:230|0.71|0.75|1|0.57|0.5|8|230|308; (*GB) gi|359488593|ref|XP_003633784.1| (e_value=2e-164) PREDICTED: triacylglycerol lipase 2-like [Vitis vinifera];; (*SWP) sp|Q67ZU1|LIP2_ARATH (e_value=6e-142) Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1;; (*TAIR) AT5G14180.1 (e_value=4e-143) | Symbols: MPL1 | Myzus persicae-induced lipase 1 | chr5:4571442-4574413 REVERSE LENGTH=418;; (*ITAG) Solyc03g005020.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:30057-32813 transcript_region:SL2.40ch03:30057..32813- go_terms:GO:0004806 functional_description:"Lipase (AHRD V1 **** Q1XBG1_RICCO); contains Interpro domain(s) IPR006693 AB-hydrolase associated lipase region "; GO:0004806 NbS00005338g0018.1 protein AED:0.22 eAED:0.22 QI:60|0.92|0.86|1|0.57|0.66|15|510|544; (*GB) gi|255536931|ref|XP_002509532.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6M9M7|Y1998_PARUW (e_value=6e-67) Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1;; (*TAIR) AT3G27180.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:10027163-10030062 REVERSE LENGTH=518;; (*ITAG) Solyc03g005010.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:20458-28113 transcript_region:SL2.40ch03:20458..28113- functional_description:"Uncharacterized RNA methyltransferase (AHRD V1 ***- C3BFC5_9BACI)"; NbS00005338g0023.1 protein AED:0.45 eAED:0.50 QI:0|0|0.25|0.75|0.33|0.75|4|305|70 NbS00005338g0024.1 protein AED:0.83 eAED:0.83 QI:0|0.5|0|0.66|0.5|0.66|3|0|62; (*GB) gi|225451455|ref|XP_002270017.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100265298 isoform 1 [Vitis vinifera];; (*TAIR) AT3G27050.1 (e_value=3e-25) | Symbols: | unknown protein; Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:9978286-9979636 REVERSE LENGTH=182; NbS00024729g0002.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|152; (*GB) gi|359488020|ref|XP_002268421.2| (e_value=5e-58) PREDICTED: uncharacterized protein LOC100244447 [Vitis vinifera];; (*TAIR) AT3G04700.1 (e_value=1e-46) | Symbols: | Protein of unknown function (DUF1685) | chr3:1276948-1277607 FORWARD LENGTH=191;; (*ITAG) Solyc01g097180.2.1 (e_value=3e-58) genomic_reference:SL2.40ch01 gene_region:79882439-79883709 transcript_region:SL2.40ch01:79882439..79883709+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00000184g0001.1 protein AED:0.15 eAED:0.15 QI:189|0.6|0.83|1|1|1|6|212|248; (*GB) gi|297828237|ref|XP_002882001.1| (e_value=1e-131) hypothetical protein ARALYDRAFT_903960 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O22151|GOS12_ARATH (e_value=4e-127) Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2;; (*TAIR) AT2G45200.1 (e_value=7e-133) | Symbols: GOS12, ATGOS12 | golgi snare 12 | chr2:18637689-18639640 REVERSE LENGTH=239;; (*ITAG) Solyc01g091020.2.1 (e_value=4e-142) genomic_reference:SL2.40ch01 gene_region:76486794-76494482 transcript_region:SL2.40ch01:76486794..76494482- go_terms:GO:0000149,GO:0005484 functional_description:"Golgi SNAP receptor complex member 1 (AHRD V1 **** B5X829_SALSA); contains Interpro domain(s) IPR007705 Vesicle transport v-SNARE "; GO:0000149,GO:0005484 NbS00000184g0103.1 protein AED:0.03 eAED:0.03 QI:161|1|1|1|0.5|0.57|7|461|117 NbS00000184g0102.1 protein AED:0.53 eAED:0.62 QI:0|0.5|0|0.66|1|1|3|0|98 NbS00014130g0001.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|295; (*GB) gi|359480496|ref|XP_003632477.1| (e_value=6e-75) PREDICTED: uncharacterized protein LOC100854068 [Vitis vinifera];; (*SWP) sp|Q8LFY8|ATL54_ARATH (e_value=1e-39) RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2;; (*TAIR) AT4G33565.1 (e_value=2e-42) | Symbols: | RING/U-box superfamily protein | chr4:16136821-16137924 FORWARD LENGTH=367;; (*ITAG) Solyc11g010330.1.1 (e_value=4e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3405885-3407054 transcript_region:SL2.40ch11:3405885..3407054+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00002682g0009.1 protein AED:0.09 eAED:0.09 QI:474|1|1|1|0.75|0.6|5|152|267; (*GB) gi|225457383|ref|XP_002284847.1| (e_value=1e-102) PREDICTED: thioredoxin-like 1-1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XFI1|TRL12_ARATH (e_value=3e-81) Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1;; (*TAIR) AT5G61440.1 (e_value=2e-82) | Symbols: ACHT5 | atypical CYS HIS rich thioredoxin 5 | chr5:24707658-24708684 FORWARD LENGTH=245;; (*ITAG) Solyc03g115870.2.1 (e_value=4e-122) genomic_reference:SL2.40ch03 gene_region:59525085-59526646 transcript_region:SL2.40ch03:59525085..59526646+ go_terms:GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00002682g0008.1 protein AED:0.14 eAED:0.14 QI:206|1|1|1|1|1|4|492|197; (*GB) gi|224112235|ref|XP_002316127.1| (e_value=3e-91) predicted protein [Populus trichocarpa];; (*SWP) sp|O13737|YDR2_SCHPO (e_value=4e-23) Uncharacterized endoplasmic reticulum membrane protein C16E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.02 PE=2 SV=2;; (*TAIR) AT1G18720.1 (e_value=9e-81) | Symbols: | Protein of unknown function (DUF962) | chr1:6458020-6459658 REVERSE LENGTH=206;; (*ITAG) Solyc03g115860.2.1 (e_value=9e-98) genomic_reference:SL2.40ch03 gene_region:59514994-59518387 transcript_region:SL2.40ch03:59514994..59518387- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum membrane protein YGL010W (AHRD V1 **-- C1BUF1_9MAXI); contains Interpro domain(s) IPR009305 Protein of unknown function DUF962 "; GO:0005515 NbS00016695g0014.1 protein AED:0.23 eAED:0.23 QI:262|0.8|0.83|1|0.6|0.5|6|405|329; (*GB) gi|255541112|ref|XP_002511620.1| (e_value=4e-119) Chaperone protein dnaJ, putative [Ricinus communis];; (*SWP) sp|Q04960|DNJH_CUCSA (e_value=1e-96) DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1;; (*TAIR) AT5G22060.1 (e_value=2e-88) | Symbols: ATJ2, J2 | DNAJ homologue 2 | chr5:7303798-7305668 REVERSE LENGTH=419;; (*ITAG) Solyc05g055160.2.1 (e_value=6e-105) genomic_reference:SL2.40ch05 gene_region:64069121-64073511 transcript_region:SL2.40ch05:64069121..64073511- go_terms:GO:0050750 functional_description:"DNAJ chaperone (AHRD V1 ***- B0W7V8_CULQU); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0050750 NbS00016695g0016.1 protein AED:0.28 eAED:0.28 QI:0|0.83|0.71|1|1|1|7|185|255; (*GB) gi|224097586|ref|XP_002310998.1| (e_value=2e-141) predicted protein [Populus trichocarpa];; (*SWP) sp|Q4QQV8|CHMP5_RAT (e_value=7e-51) Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1;; (*TAIR) AT5G04850.1 (e_value=1e-134) | Symbols: VPS60.2 | SNF7 family protein | chr5:1408246-1409806 REVERSE LENGTH=235;; (*ITAG) Solyc05g055170.2.1 (e_value=1e-154) genomic_reference:SL2.40ch05 gene_region:64073846-64078030 transcript_region:SL2.40ch05:64073846..64078030- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 5 (AHRD V1 **-- B6TYU1_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00016695g0009.1 protein AED:0.76 eAED:0.76 QI:0|0|0|0.25|1|1|4|0|83 NbS00016695g0018.1 protein AED:0.08 eAED:0.09 QI:95|0.88|0.9|1|0.77|0.8|10|0|1470; (*GB) gi|225463725|ref|XP_002264162.1| (e_value=7e-107) PREDICTED: uncharacterized protein LOC100261025 [Vitis vinifera];; (*TAIR) AT3G10650.1 (e_value=3e-68) | Symbols: | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309;; (*ITAG) Solyc05g055110.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64055678-64062066 transcript_region:SL2.40ch05:64055678..64062066+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002844g0002.1 protein AED:0.11 eAED:0.11 QI:0|0.5|0.33|0.66|1|1|3|105|77; (*GB) gi|12580859|emb|CAC27138.1| (e_value=1e-17) glucose regulated protein homolog 4 precursor [Picea abies];; (*SWP) sp|Q03681|BIP1_TOBAC (e_value=3e-19) Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1;; (*TAIR) AT5G28540.1 (e_value=1e-19) | Symbols: BIP1 | heat shock protein 70 (Hsp 70) family protein | chr5:10540665-10543274 REVERSE LENGTH=669;; (*ITAG) Solyc08g082820.2.1 (e_value=7e-20) genomic_reference:SL2.40ch08 gene_region:62655311-62659585 transcript_region:SL2.40ch08:62655311..62659585+ go_terms:GO:0042623,GO:0051787 functional_description:"Heat shock protein (AHRD V1 ***- Q84KP8_CYAME); contains Interpro domain(s) IPR013126 Heat shock protein 70 "; GO:0042623,GO:0051787 NbS00002844g0004.1 protein AED:0.08 eAED:0.81 QI:0|0|0|1|0|0|2|0|113 NbS00002844g0106.1 protein AED:0.14 eAED:0.14 QI:158|0.5|1|1|0.5|0.33|3|313|239 NbS00002844g0101.1 protein AED:0.43 eAED:0.43 QI:0|-1|0|1|-1|1|1|0|99 NbS00002844g0211.1 protein AED:0.10 eAED:0.10 QI:261|1|1|1|1|1|18|392|575 NbS00002844g0210.1 protein AED:0.22 eAED:0.22 QI:218|1|0.75|1|0.33|0.5|4|0|268 NbS00002844g0215.1 protein AED:0.23 eAED:0.35 QI:0|0|0.5|1|0|0|2|752|72 NbS00002844g0216.1 protein AED:0.35 eAED:0.35 QI:0|1|0.66|1|1|0.66|3|0|142 NbS00031954g0006.1 protein AED:0.27 eAED:0.27 QI:291|0.62|0.66|0.88|0.87|0.77|9|475|423; (*GB) gi|255541190|ref|XP_002511659.1| (e_value=3e-168) Phosphatidate cytidylyltransferase, putative [Ricinus communis];; (*SWP) sp|P73548|CDSA_SYNY3 (e_value=7e-51) Phosphatidate cytidylyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=cdsA PE=3 SV=1;; (*TAIR) AT3G60620.1 (e_value=1e-152) | Symbols: CDS5 | cytidinediphosphate diacylglycerol synthase 5 | chr3:22406537-22408239 FORWARD LENGTH=399;; (*ITAG) Solyc01g090940.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76390782-76401233 transcript_region:SL2.40ch01:76390782..76401233+ go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RD70_RICCO); contains Interpro domain(s) IPR000374 Phosphatidate cytidylyltransferase "; GO:0004605 NbS00027714g0004.1 protein AED:0.01 eAED:0.01 QI:0|0|0|1|0|0|2|0|487; (*GB) gi|225434961|ref|XP_002283909.1| (e_value=0.0) PREDICTED: fasciclin-like arabinogalactan protein 4 [Vitis vinifera];; (*SWP) sp|Q9SNC3|FLA4_ARATH (e_value=3e-131) Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1;; (*TAIR) AT3G46550.1 (e_value=2e-132) | Symbols: SOS5 | Fasciclin-like arabinogalactan family protein | chr3:17136612-17137874 REVERSE LENGTH=420;; (*ITAG) Solyc03g112880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57222149-57223432 transcript_region:SL2.40ch03:57222149..57223432- go_terms:GO:0005515,GO:0030247 functional_description:"Fasciclin-like arabinogalactan protein 9 (AHRD V1 ***- A9XTL4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005515,GO:0030247 NbS00030413g0001.1 protein AED:0.31 eAED:0.31 QI:150|0|0.5|1|0|0.5|2|0|250; (*GB) gi|78191450|gb|ABB29946.1| (e_value=9e-174) F-box family protein-like [Solanum tuberosum];; (*SWP) sp|Q9FL82|FB270_ARATH (e_value=9e-122) F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1;; (*TAIR) AT5G39250.1 (e_value=7e-123) | Symbols: | F-box family protein | chr5:15724860-15725618 FORWARD LENGTH=252;; (*ITAG) Solyc02g088730.1.1 (e_value=4e-177) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45291619-45292371 transcript_region:SL2.40ch02:45291619..45292371- functional_description:"F-box family protein-like (AHRD V1 ***- Q307Y5_SOLTU); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00030413g0003.1 protein AED:0.04 eAED:0.04 QI:149|1|1|1|0.83|0.71|7|119|551; (*GB) gi|28628063|gb|AAO25511.1| (e_value=0.0) 4-coumarate:CoA ligase-like [Nicotiana sylvestris];; (*SWP) sp|Q9LQ12|4CLL1_ARATH (e_value=0.0) 4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1;; (*TAIR) AT1G62940.1 (e_value=0.0) | Symbols: ACOS5 | acyl-CoA synthetase 5 | chr1:23310554-23312747 FORWARD LENGTH=542;; (*ITAG) Solyc02g088710.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45273943-45276484 transcript_region:SL2.40ch02:45273943..45276484+ go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase-like (AHRD V1 **** Q84K86_NICSY); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00030413g0012.1 protein AED:0.16 eAED:0.16 QI:191|0.88|0.9|1|0.77|0.9|10|12|535; (*GB) gi|82621176|gb|ABB86276.1| (e_value=0.0) mitochondrial processing peptidase-like [Solanum tuberosum];; (*SWP) sp|Q42290|MPPB_ARATH (e_value=0.0) Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2;; (*TAIR) AT3G02090.1 (e_value=0.0) | Symbols: MPPBETA | Insulinase (Peptidase family M16) protein | chr3:365624-368526 FORWARD LENGTH=531;; (*ITAG) Solyc02g088700.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45268178-45273518 transcript_region:SL2.40ch02:45268178..45273518+ go_terms:GO:0032403 functional_description:"Mitochondrial processing peptidase beta subunit (AHRD V1 ***- Q9AXQ2_CUCME); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0032403 NbS00030413g0010.1 protein AED:0.38 eAED:0.38 QI:0|0.86|0.68|0.93|1|1|16|0|587; (*GB) gi|359488537|ref|XP_003633774.1| (e_value=2e-146) PREDICTED: uncharacterized protein LOC100853981 [Vitis vinifera];; (*SWP) sp|O60506|HNRPQ_HUMAN (e_value=8e-25) Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2;; (*TAIR) AT4G00830.2 (e_value=1e-29) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495;; (*ITAG) Solyc02g088720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45279650-45290880 transcript_region:SL2.40ch02:45279650..45290880+ go_terms:GO:0003676,GO:0000166 functional_description:"Heterogeneous nuclear ribonucleoprotein R (Fragment) (AHRD V1 *--- Q28BX1_XENTR); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00030724g0015.1 protein AED:0.16 eAED:0.18 QI:15|0.71|0.66|0.86|0.71|0.8|15|498|1098; (*GB) gi|297736443|emb|CBI25314.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q32NW2|LENG8_XENLA (e_value=3e-60) Leukocyte receptor cluster member 8 homolog OS=Xenopus laevis GN=leng8 PE=2 SV=1;; (*TAIR) AT2G39340.1 (e_value=0.0) | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr2:16424043-16429771 FORWARD LENGTH=1006;; (*ITAG) Solyc05g054910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63845774-63861715 transcript_region:SL2.40ch05:63845774..63861715- functional_description:"SAC3/GANP domain-containing protein (AHRD V1 *--- C1HC97_PARBA); contains Interpro domain(s) IPR005062 SAC3/GANP/Nin1/mts3/eIF-3 p25 "; NbS00030724g0011.1 protein AED:0.02 eAED:0.02 QI:0|0|0|1|1|1|2|0|753; (*GB) gi|255568217|ref|XP_002525084.1| (e_value=0.0) ATP-binding cassette transporter, putative [Ricinus communis];; (*SWP) sp|O80946|AB1G_ARATH (e_value=0.0) ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1;; (*TAIR) AT2G39350.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr2:16430174-16432396 REVERSE LENGTH=740;; (*ITAG) Solyc05g054890.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63838739-63841441 transcript_region:SL2.40ch05:63838739..63841441+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 1 (AHRD V1 **** AB1G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00030724g0013.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|0|0.5|2|0|159; (*GB) gi|351726263|ref|NP_001235329.1| (e_value=1e-31) uncharacterized protein LOC100500505 precursor [Glycine max];; (*SWP) sp|Q41001|BCP_PEA (e_value=1e-14) Blue copper protein OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G07475.1 (e_value=9e-28) | Symbols: | Cupredoxin superfamily protein | chr5:2364827-2365536 REVERSE LENGTH=192;; (*ITAG) Solyc05g054900.2.1 (e_value=5e-48) genomic_reference:SL2.40ch05 gene_region:63843911-63845027 transcript_region:SL2.40ch05:63843911..63845027+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6T8E0_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00004939g0002.1 protein AED:0.29 eAED:0.35 QI:0|0|0|0.66|1|1|3|0|137; (*ITAG) Solyc05g008840.1.1 (e_value=6e-51) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:3068850-3071104 transcript_region:SL2.40ch05:3068850..3071104- functional_description:"Zinc finger protein 2 (AHRD V1 *-*- Q00M82_SOYBN)"; NbS00009962g0003.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc03g063790.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:33526476-33526877 transcript_region:SL2.40ch03:33526476..33526877- functional_description:"Unknown Protein (AHRD V1)"; NbS00051277g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|207; (*GB) gi|147803507|emb|CAN68722.1| (e_value=5e-96) hypothetical protein VITISV_033681 [Vitis vinifera];; (*TAIR) AT2G27770.1 (e_value=1e-79) | Symbols: | Plant protein of unknown function (DUF868) | chr2:11833089-11834051 REVERSE LENGTH=320;; (*ITAG) Solyc06g074500.1.1 (e_value=9e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42484431-42485342 transcript_region:SL2.40ch06:42484431..42485342- functional_description:"AT5G28150-like protein (Fragment) (AHRD V1 *-*- D6PS16_9BRAS); contains Interpro domain(s) IPR008586 Protein of unknown function DUF868, plant "; NbS00059475g0001.1 protein AED:0.17 eAED:0.17 QI:428|1|1|1|0.6|0.5|6|391|347; (*GB) gi|359481589|ref|XP_002282804.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263058 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=8e-169) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc09g009520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2929991-2932883 transcript_region:SL2.40ch09:2929991..2932883- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00028610g0013.1 protein AED:0.06 eAED:0.06 QI:0|1|0.5|1|0|0|2|85|76 NbS00028610g0009.1 protein AED:0.18 eAED:0.18 QI:0|0|0|0.5|1|1|2|0|98; (*ITAG) Solyc07g032700.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00028610g0014.1 protein AED:0.19 eAED:0.20 QI:289|0.5|0.33|1|1|1|3|0|163; (*GB) gi|297838897|ref|XP_002887330.1| (e_value=2e-60) C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FVJ3|AGD12_ARATH (e_value=2e-33) ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1;; (*TAIR) AT1G70810.1 (e_value=2e-62) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:26704207-26705091 FORWARD LENGTH=165;; (*ITAG) Solyc04g007800.2.1 (e_value=3e-89) genomic_reference:SL2.40ch04 gene_region:1490670-1493693 transcript_region:SL2.40ch04:1490670..1493693- functional_description:"C2 domain-containing protein (AHRD V1 **-- D7KYE6_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00028610g0007.1 protein AED:0.22 eAED:0.22 QI:0|0|0|1|1|1|2|0|231; (*ITAG) Solyc07g017980.1.1 (e_value=1e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:8734246-8734614 transcript_region:SL2.40ch07:8734246..8734614+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028610g0002.1 protein AED:0.40 eAED:0.40 QI:0|-1|0|1|-1|1|1|0|86; (*ITAG) Solyc05g046240.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:57572308-57572715 transcript_region:SL2.40ch05:57572308..57572715+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028610g0017.1 protein AED:0.38 eAED:0.93 QI:0|0|0|1|0|0.5|2|0|189 NbS00039745g0002.1 protein AED:0.28 eAED:0.28 QI:0|-1|0|1|-1|1|1|0|191; (*GB) gi|357486707|ref|XP_003613641.1| (e_value=2e-78) Putativ eribonuclease P [Medicago truncatula];; (*TAIR) AT1G14345.1 (e_value=4e-77) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:4899176-4899766 FORWARD LENGTH=196;; (*ITAG) Solyc01g010640.2.1 (e_value=2e-99) genomic_reference:SL2.40ch01 gene_region:5646161-5647113 transcript_region:SL2.40ch01:5646161..5647113+ go_terms:GO:0055114 functional_description:"Uncharacterized membrane protein (AHRD V1 **-- Q46JN3_PROMT); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0055114 NbS00039745g0008.1 protein AED:0.14 eAED:0.15 QI:50|0.84|0.85|1|0.38|0.57|14|358|451; (*GB) gi|118487014|gb|ABK95338.1| (e_value=4e-176) unknown [Populus trichocarpa];; (*SWP) sp|O82244|ALG3_ARATH (e_value=4e-170) Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase OS=Arabidopsis thaliana GN=ALG3 PE=1 SV=1;; (*TAIR) AT2G47760.1 (e_value=3e-171) | Symbols: ALG3, AtALG3 | asparagine-linked glycosylation 3 | chr2:19565672-19568221 REVERSE LENGTH=438;; (*ITAG) Solyc09g074900.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62198122-62204508 transcript_region:SL2.40ch09:62198122..62204508- go_terms:GO:0000033 functional_description:"Dolichyl-P-Man Man5GlcNAc2-PP-dolichyl mannosyltransferase (AHRD V1 **** C0H8S4_SALSA); contains Interpro domain(s) IPR007873 Glycosyltransferase, ALG3 "; GO:0000033 NbS00039745g0009.1 protein AED:0.04 eAED:0.13 QI:29|0|0|1|0|0|2|0|99; (*GB) gi|113205174|gb|AAT40518.2| (e_value=5e-45) Homeobox-leucine zipper protein HAT7 , putative [Solanum demissum];; (*SWP) sp|Q8S7W9|HOX21_ORYSJ (e_value=2e-36) Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1;; (*TAIR) AT1G69780.1 (e_value=9e-38) | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294;; (*ITAG) Solyc05g007180.2.1 (e_value=1e-47) genomic_reference:SL2.40ch05 gene_region:1796893-1799609 transcript_region:SL2.40ch05:1796893..1799609+ go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0043565 NbC24830109g0002.1 protein AED:0.62 eAED:0.82 QI:36|0|0.25|0.5|0.66|0.5|4|8|82; (*GB) gi|253796262|gb|ACT35735.1| (e_value=4e-45) cullin 1 [Petunia x hybrida];; (*SWP) sp|Q94AH6|CUL1_ARATH (e_value=4e-39) Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1;; (*TAIR) AT4G02570.4 (e_value=3e-40) | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FORWARD LENGTH=738;; (*ITAG) Solyc09g074680.2.1 (e_value=4e-48) genomic_reference:SL2.40ch09 gene_region:62001464-62009086 transcript_region:SL2.40ch09:62001464..62009086- go_terms:GO:0030332,GO:0004842 functional_description:"Cullin 1B (AHRD V1 ***- Q711G7_TOBAC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332,GO:0004842 NbS00000010g0005.1 protein AED:0.11 eAED:0.11 QI:402|0.93|0.94|1|1|1|17|275|839; (*GB) gi|4151066|emb|CAA71815.1| (e_value=0.0) ribonucleotide reductase [Nicotiana tabacum];; (*SWP) sp|Q9SJ20|RIR1_ARATH (e_value=0.0) Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1;; (*TAIR) AT2G21790.1 (e_value=0.0) | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide reductase 1 | chr2:9293529-9297580 FORWARD LENGTH=816;; (*ITAG) Solyc04g051350.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:49555023-49560819 transcript_region:SL2.40ch04:49555023..49560819+ go_terms:GO:0005515,GO:0016959 functional_description:"Ribonucleoside-diphosphate reductase (AHRD V1 **** Q9ZR57_TOBAC); contains Interpro domain(s) IPR013346 Ribonucleoside-diphosphate reductase, alpha subunit "; GO:0005515,GO:0016959 NbS00006102g0022.1 protein AED:0.07 eAED:0.07 QI:21|0.73|0.68|1|0.86|0.87|16|197|1293; (*GB) gi|255570015|ref|XP_002525970.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q6YXY2|HACL1_ORYSJ (e_value=0.0) Probable histone acetyltransferase HAC-like 1 OS=Oryza sativa subsp. japonica GN=Os02g0137500 PE=3 SV=2;; (*TAIR) AT1G79000.1 (e_value=0.0) | Symbols: HAC1, PCAT2, ATHPCAT2, ATHAC1 | histone acetyltransferase of the CBP family 1 | chr1:29716933-29723984 REVERSE LENGTH=1697;; (*ITAG) Solyc02g089790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46065514-46074948 transcript_region:SL2.40ch02:46065514..46074948+ go_terms:GO:0009055,GO:0005634,GO:0008270 functional_description:"Histone acetyltransferase (AHRD V1 ***- B9H3R2_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0009055,GO:0005634,GO:0008270 NbS00006102g0027.1 protein AED:0.11 eAED:0.11 QI:0|0.85|0.62|1|0.57|0.62|8|0|282; (*GB) gi|224127372|ref|XP_002329261.1| (e_value=5e-112) predicted protein [Populus trichocarpa];; (*TAIR) AT3G02420.1 (e_value=8e-111) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:496179-498772 REVERSE LENGTH=348;; (*ITAG) Solyc03g045090.2.1 (e_value=6e-127) genomic_reference:SL2.40ch03 gene_region:15474052-15478785 transcript_region:SL2.40ch03:15474052..15478785- functional_description:"cDNA clone 001-043-A08 full insert sequence (AHRD V1 **-- B7E741_ORYSJ)"; NbS00006102g0020.1 protein AED:0.37 eAED:0.37 QI:332|0.33|0.75|1|0.33|0.5|4|273|118; (*GB) gi|346703212|emb|CBX25311.1| (e_value=2e-17) hypothetical_protein [Oryza brachyantha];; (*TAIR) AT3G52990.2 (e_value=5e-17) | Symbols: | Pyruvate kinase family protein | chr3:19649336-19652237 FORWARD LENGTH=474;; (*ITAG) Solyc09g008840.2.1 (e_value=3e-21) genomic_reference:SL2.40ch09 gene_region:2258920-2266051 transcript_region:SL2.40ch09:2258920..2266051- go_terms:GO:0006096,GO:0003824 functional_description:"Pyruvate kinase (AHRD V1 ***- A9P7U5_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0006096,GO:0003824 NbS00006102g0024.1 protein AED:0.21 eAED:0.24 QI:0|0.5|0.42|1|1|1|7|0|618; (*GB) gi|225451956|ref|XP_002283177.1| (e_value=0.0) PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera];; (*SWP) sp|Q61749|EI2BD_MOUSE (e_value=6e-86) Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2;; (*TAIR) AT5G38640.1 (e_value=0.0) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642;; (*ITAG) Solyc02g089810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46084128-46088822 transcript_region:SL2.40ch02:46084128..46088822- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B delta subunit (AHRD V1 **** B6U6N6_MAIZE); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0005085 NbS00006102g0023.1 protein AED:0.25 eAED:0.25 QI:0|0.45|0.33|0.75|0.81|0.66|12|383|1068; (*GB) gi|296087303|emb|CBI33677.3| (e_value=9e-167) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=8e-28) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT1G67230.1 (e_value=3e-93) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc02g089800.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:46075529-46082342 transcript_region:SL2.40ch02:46075529..46082342- functional_description:"Nuclear matrix constituent protein 1-like (AHRD V1 ***- A6BME3_PETCR)"; NbS00006102g0025.1 protein AED:0.31 eAED:0.31 QI:0|0.5|0.57|0.85|0.66|0.57|7|271|198; (*GB) gi|225451958|ref|XP_002283197.1| (e_value=7e-69) PREDICTED: cyclin-B1-2 [Vitis vinifera];; (*SWP) sp|Q0DWQ7|CCB12_ORYSJ (e_value=4e-26) Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1;; (*TAIR) AT5G38660.2 (e_value=3e-64) | Symbols: APE1 | acclimation of photosynthesis to environment | chr5:15471208-15475497 REVERSE LENGTH=431;; (*ITAG) Solyc02g089820.2.1 (e_value=2e-83) genomic_reference:SL2.40ch02 gene_region:46089148-46092029 transcript_region:SL2.40ch02:46089148..46092029- go_terms:GO:0005515 functional_description:"Proteasome maturation protein (AHRD V1 ***- A5HKJ3_RAT); contains Interpro domain(s) IPR008012 Proteasome maturation factor UMP1 "; GO:0005515 NbS00035338g0001.1 protein AED:0.37 eAED:0.37 QI:61|0.5|0|0.66|1|0.66|3|0|123; (*GB) gi|255570496|ref|XP_002526206.1| (e_value=4e-64) protein kinase, putative [Ricinus communis];; (*SWP) sp|Q940A2|P2C31_ARATH (e_value=7e-61) Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1;; (*TAIR) AT2G40860.1 (e_value=5e-62) | Symbols: | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein | chr2:17053747-17057108 REVERSE LENGTH=658;; (*ITAG) Solyc01g056690.2.1 (e_value=9e-76) genomic_reference:SL2.40ch01 gene_region:48822668-48837909 transcript_region:SL2.40ch01:48822668..48837909- go_terms:GO:0006468,GO:0003824 functional_description:"Kinase family protein (AHRD V1 ***- D7LFV3_ARALY); contains Interpro domain(s) IPR014045 Protein phosphatase 2C, N-terminal "; GO:0006468,GO:0003824 NbS00011977g0003.1 protein AED:0.08 eAED:0.08 QI:79|1|1|1|0.4|0.33|6|79|322; (*GB) gi|225452464|ref|XP_002274475.1| (e_value=0.0) PREDICTED: apoptosis-enhancing nuclease-like [Vitis vinifera];; (*SWP) sp|Q08237|REXO4_YEAST (e_value=9e-30) RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1;; (*TAIR) AT3G27970.1 (e_value=2e-171) | Symbols: | Exonuclease family protein | chr3:10389609-10391544 FORWARD LENGTH=357;; (*ITAG) Solyc02g086850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44036807-44039072 transcript_region:SL2.40ch02:44036807..44039072+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- B6T4V3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00008055g0007.1 protein AED:0.07 eAED:0.07 QI:0|0.5|0.4|1|0.5|0.4|5|0|441; (*GB) gi|134035502|gb|ABO47739.1| (e_value=0.0) alpha-tubulin [Gossypium hirsutum];; (*SWP) sp|P29510|TBA2_ARATH (e_value=0.0) Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1;; (*TAIR) AT1G50010.1 (e_value=0.0) | Symbols: TUA2 | tubulin alpha-2 chain | chr1:18517737-18519729 FORWARD LENGTH=450;; (*ITAG) Solyc02g091870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47685625-47687676 transcript_region:SL2.40ch02:47685625..47687676+ go_terms:GO:0046982 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982 NbS00029233g0008.1 protein AED:0.22 eAED:0.22 QI:54|1|0.8|1|1|1|5|0|335; (*GB) gi|27529838|dbj|BAC53934.1| (e_value=7e-51) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT5G60800.1 (e_value=2e-40) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24461116-24462464 REVERSE LENGTH=283;; (*ITAG) Solyc11g069070.1.1 (e_value=3e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50742549-50744955 transcript_region:SL2.40ch11:50742549..50744955+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 *-*- B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00013000g0018.1 protein AED:0.09 eAED:0.09 QI:132|0.5|0.66|1|0.5|1|3|273|137; (*GB) gi|224141341|ref|XP_002324032.1| (e_value=8e-44) thioredoxin h [Populus trichocarpa];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=6e-35) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=5e-36) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc05g006860.2.1 (e_value=9e-71) genomic_reference:SL2.40ch05 gene_region:1482510-1483521 transcript_region:SL2.40ch05:1482510..1483521- go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00013000g0013.1 protein AED:0.14 eAED:0.16 QI:0|0.66|0.25|1|0.66|0.5|4|0|180; (*GB) gi|66096352|gb|AAY42864.1| (e_value=2e-43) thioredoxin H [Nicotiana alata];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=2e-34) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=1e-35) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc05g006860.2.1 (e_value=3e-72) genomic_reference:SL2.40ch05 gene_region:1482510-1483521 transcript_region:SL2.40ch05:1482510..1483521- go_terms:GO:0045454 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00013000g0001.1 protein AED:0.27 eAED:0.28 QI:0|1|0.33|1|0.5|0.33|3|0|110; (*GB) gi|224141341|ref|XP_002324032.1| (e_value=2e-40) thioredoxin h [Populus trichocarpa];; (*SWP) sp|Q38879|TRXH2_ARATH (e_value=2e-32) Thioredoxin H2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2;; (*TAIR) AT5G39950.1 (e_value=2e-33) | Symbols: ATTRX2, ATH2, ATTRXH2, TRXH2, TRX2 | thioredoxin 2 | chr5:15990885-15991881 REVERSE LENGTH=133;; (*ITAG) Solyc05g006870.2.1 (e_value=4e-57) genomic_reference:SL2.40ch05 gene_region:1484874-1486270 transcript_region:SL2.40ch05:1484874..1486270- go_terms:GO:0032403 functional_description:"Thioredoxin H (AHRD V1 ***- Q4U0W0_NICAL); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0032403 NbS00013000g0016.1 protein AED:0.27 eAED:0.27 QI:0|1|0.5|1|1|1|2|0|330; (*GB) gi|34811740|gb|AAQ82703.1| (e_value=0.0) potyviral capsid protein interacting protein 2b [Nicotiana tabacum];; (*SWP) sp|Q80Y75|DJB13_MOUSE (e_value=9e-74) DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1;; (*TAIR) AT1G10350.1 (e_value=1e-137) | Symbols: | DNAJ heat shock family protein | chr1:3393595-3394860 REVERSE LENGTH=349;; (*ITAG) Solyc05g006820.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:1449551-1452844 transcript_region:SL2.40ch05:1449551..1452844+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_THET8); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00033891g0003.1 protein AED:0.00 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|358; (*GB) gi|225452813|ref|XP_002283533.1| (e_value=4e-79) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=1e-52) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT3G28920.1 (e_value=2e-67) | Symbols: AtHB34, HB34, ZHD9 | homeobox protein 34 | chr3:10940598-10941536 REVERSE LENGTH=312;; (*ITAG) Solyc02g067320.1.1 (e_value=1e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32098473-32099468 transcript_region:SL2.40ch02:32098473..32099468- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00033891g0005.1 protein AED:0.19 eAED:0.25 QI:0|0|0|0.5|1|1|2|0|85 NbS00005413g0101.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|157 NbS00006268g0010.1 protein AED:0.02 eAED:0.02 QI:0|1|0.66|1|0.5|1|3|0|149; (*GB) gi|359479082|ref|XP_002272646.2| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100259916 [Vitis vinifera];; (*TAIR) AT3G43590.1 (e_value=1e-23) | Symbols: | zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551;; (*ITAG) Solyc01g056760.2.1 (e_value=1e-70) genomic_reference:SL2.40ch01 gene_region:49372570-49378698 transcript_region:SL2.40ch01:49372570..49378698+ go_terms:GO:0003697,GO:0003727 functional_description:"DNA-binding protein HEXBP (AHRD V1 *--* HEXP_LEIMA); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0003697,GO:0003727 NbS00006268g0009.1 protein AED:0.30 eAED:0.30 QI:0|1|0.33|1|1|1|3|0|126; (*ITAG) Solyc01g056730.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:49351149-49351992 transcript_region:SL2.40ch01:49351149..49351992+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006268g0003.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|120 NbS00016926g0007.1 protein AED:0.15 eAED:0.19 QI:36|0.81|0.82|1|0.93|0.94|17|0|1015; (*GB) gi|255583233|ref|XP_002532381.1| (e_value=0.0) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|O81635|ATK4_ARATH (e_value=3e-102) Kinesin-4 OS=Arabidopsis thaliana GN=ATK4 PE=1 SV=2;; (*TAIR) AT2G22610.1 (e_value=0.0) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr2:9599550-9604626 FORWARD LENGTH=1083;; (*ITAG) Solyc11g010920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3970759-3977638 transcript_region:SL2.40ch11:3970759..3977638+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00016926g0008.1 protein AED:0.30 eAED:0.30 QI:0|0.66|0.5|1|0.33|0.25|4|242|134; (*GB) gi|225456377|ref|XP_002284092.1| (e_value=1e-48) PREDICTED: HVA22-like protein e [Vitis vinifera];; (*SWP) sp|Q9S760|HA22D_ARATH (e_value=2e-38) HVA22-like protein d OS=Arabidopsis thaliana GN=HVA22D PE=2 SV=1;; (*TAIR) AT4G24960.1 (e_value=1e-39) | Symbols: ATHVA22D, HVA22D | HVA22 homologue D | chr4:12828060-12828982 FORWARD LENGTH=135;; (*ITAG) Solyc03g097420.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:53193862-53195036 transcript_region:SL2.40ch03:53193862..53195036+ go_terms:GO:0042802 functional_description:"Receptor expression-enhancing protein 5 (AHRD V1 **-- C1C4Y8_RANCA); contains Interpro domain(s) IPR004345 TB2/DP1 and HVA22 related protein "; GO:0042802 NbS00016926g0009.1 protein AED:0.15 eAED:0.15 QI:87|0.5|0.33|1|0|0|3|0|317; (*GB) gi|255583229|ref|XP_002532379.1| (e_value=2e-92) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9LSL6|DOF57_ARATH (e_value=9e-50) Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana GN=DOF5.7 PE=2 SV=1;; (*TAIR) AT5G65590.1 (e_value=7e-51) | Symbols: | Dof-type zinc finger DNA-binding family protein | chr5:26212084-26213034 REVERSE LENGTH=316;; (*ITAG) Solyc11g010940.1.1 (e_value=3e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3987715-3989539 transcript_region:SL2.40ch11:3987715..3989539- go_terms:GO:0045449 functional_description:"Dof zinc finger protein 6 (AHRD V1 *-*- A5HWF5_HORVD); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbS00007124g0010.1 protein AED:0.03 eAED:0.03 QI:191|1|1|1|0.66|0.85|7|357|411; (*GB) gi|296085177|emb|CBI28672.3| (e_value=2e-126) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G38430.1 (e_value=7e-74) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:16092950-16094810 REVERSE LENGTH=393;; (*ITAG) Solyc04g050920.2.1 (e_value=3e-162) genomic_reference:SL2.40ch04 gene_region:48128774-48132067 transcript_region:SL2.40ch04:48128774..48132067+ go_terms:GO:0006810 functional_description:"Os02g0504100 protein (Fragment) (AHRD V1 *-*- Q0E114_ORYSJ)"; GO:0006810 NbS00007124g0008.1 protein AED:0.46 eAED:0.46 QI:0|1|0.33|1|1|1|3|0|248; (*GB) gi|225431711|ref|XP_002267516.1| (e_value=5e-157) PREDICTED: histone deacetylase 14 [Vitis vinifera];; (*SWP) sp|Q941D6|HDA14_ARATH (e_value=6e-147) Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1;; (*TAIR) AT4G33470.1 (e_value=4e-148) | Symbols: hda14, ATHDA14 | histone deacetylase 14 | chr4:16102774-16105439 REVERSE LENGTH=423;; (*ITAG) Solyc01g009110.2.1 (e_value=2e-171) genomic_reference:SL2.40ch01 gene_region:3123209-3125706 transcript_region:SL2.40ch01:3123209..3125706- go_terms:GO:0005634 functional_description:"Histone deacetylase family protein expressed (AHRD V1 ***- Q2QWU2_ORYSJ); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0005634 NbS00007124g0009.1 protein AED:0.50 eAED:0.73 QI:0|0.37|0.33|0.88|0.87|0.77|9|0|280; (*GB) gi|356512844|ref|XP_003525125.1| (e_value=4e-34) PREDICTED: histone deacetylase 14-like [Glycine max];; (*SWP) sp|Q941D6|HDA14_ARATH (e_value=6e-31) Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1;; (*TAIR) AT4G33470.1 (e_value=5e-32) | Symbols: hda14, ATHDA14 | histone deacetylase 14 | chr4:16102774-16105439 REVERSE LENGTH=423;; (*ITAG) Solyc01g009120.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:3135993-3143714 transcript_region:SL2.40ch01:3135993..3143714- go_terms:GO:0005634 functional_description:"Histone deacetylase family protein expressed (AHRD V1 ***- Q2QWU2_ORYSJ); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0005634 NbS00028015g0007.1 protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|0|0|2|453|930; (*GB) gi|359490053|ref|XP_003634022.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O65567|PP342_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2;; (*TAIR) AT4G30825.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15009605-15012319 FORWARD LENGTH=904;; (*ITAG) Solyc07g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:786504-789904 transcript_region:SL2.40ch07:786504..789904- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBL7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00028015g0011.1 protein AED:0.25 eAED:0.25 QI:0|0.81|0.66|1|0.72|0.75|12|0|470; (*GB) gi|356559428|ref|XP_003548001.1| (e_value=0.0) PREDICTED: V-type proton ATPase subunit H-like isoform 1 [Glycine max];; (*SWP) sp|Q9LX65|VATH_ARATH (e_value=0.0) V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1;; (*TAIR) AT3G42050.1 (e_value=0.0) | Symbols: | vacuolar ATP synthase subunit H family protein | chr3:14228846-14232228 REVERSE LENGTH=441;; (*ITAG) Solyc07g005940.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:776212-784540 transcript_region:SL2.40ch07:776212..784540- go_terms:GO:0005515 functional_description:"Vacuolar ATPase subunit H protein (AHRD V1 ***- B6SIW6_MAIZE); contains Interpro domain(s) IPR004908 ATPase, V1 complex, subunit H "; GO:0005515 NbS00028015g0014.1 protein AED:0.01 eAED:0.01 QI:0|0|0|0.66|0.5|0.66|3|0|962; (*GB) gi|224091833|ref|XP_002309364.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUI0|Y2241_ARATH (e_value=0.0) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=2 SV=1;; (*TAIR) AT2G24130.1 (e_value=0.0) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr2:10258148-10261220 FORWARD LENGTH=980;; (*ITAG) Solyc07g005920.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:752031-755067 transcript_region:SL2.40ch07:752031..755067- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00028015g0006.1 protein AED:0.48 eAED:0.48 QI:0|0|0|0.42|1|1|7|0|346; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-27) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=6e-57) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00012422g0010.1 protein AED:0.07 eAED:0.07 QI:114|1|1|1|1|0.83|6|360|424; (*GB) gi|147773362|emb|CAN75716.1| (e_value=0.0) hypothetical protein VITISV_007757 [Vitis vinifera];; (*SWP) sp|Q8VZJ9|Y4330_ARATH (e_value=5e-165) Probable leucine-rich repeat receptor-like protein kinase At4g00330 OS=Arabidopsis thaliana GN=At4g00330 PE=2 SV=1;; (*TAIR) AT4G00330.1 (e_value=4e-166) | Symbols: CRCK2 | calmodulin-binding receptor-like cytoplasmic kinase 2 | chr4:142787-144427 REVERSE LENGTH=411;; (*ITAG) Solyc10g012170.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4518212-4524148 transcript_region:SL2.40ch10:4518212..4524148- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** A7VM39_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00012422g0011.1 protein AED:0.08 eAED:0.08 QI:64|1|1|1|0|1|2|329|465; (*GB) gi|359489825|ref|XP_002276148.2| (e_value=1e-119) PREDICTED: AT-rich interactive domain-containing protein 1-like [Vitis vinifera];; (*SWP) sp|Q84JT7|ARID1_ARATH (e_value=4e-67) AT-rich interactive domain-containing protein 1 OS=Arabidopsis thaliana GN=ARID1 PE=2 SV=1;; (*TAIR) AT2G46040.1 (e_value=3e-68) | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 domain protein | chr2:18935684-18937807 REVERSE LENGTH=562;; (*ITAG) Solyc05g049960.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:58951213-58958621 transcript_region:SL2.40ch05:58951213..58958621- go_terms:GO:0005622 functional_description:"ARID/BRIGHT DNA-binding domain-containing protein/ELM2 domain-containing protein/Myb-like DNA-binding domain-containing protein (AHRD V1 *--- Q1PEA0_ARATH); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005622 NbS00013375g0007.1 protein AED:0.08 eAED:0.08 QI:0|0.33|0.25|1|0.33|0.5|4|0|348; (*GB) gi|225423446|ref|XP_002273801.1| (e_value=6e-114) PREDICTED: exopolygalacturonase [Vitis vinifera];; (*SWP) sp|Q6H9K0|PGLR2_PLAAC (e_value=3e-91) Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1;; (*TAIR) AT1G78400.1 (e_value=1e-105) | Symbols: | Pectin lyase-like superfamily protein | chr1:29498281-29499682 REVERSE LENGTH=404;; (*ITAG) Solyc07g056290.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:61470406-61473987 transcript_region:SL2.40ch07:61470406..61473987+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00007633g0001.1 protein AED:0.36 eAED:0.36 QI:275|0.5|0.66|1|0|0|3|49|148; (*GB) gi|357461819|ref|XP_003601191.1| (e_value=3e-17) hypothetical protein MTR_3g077030 [Medicago truncatula];; (*TAIR) AT3G26510.4 (e_value=1e-14) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr3:9711886-9712588 REVERSE LENGTH=196;; (*ITAG) Solyc06g071750.2.1 (e_value=1e-50) genomic_reference:SL2.40ch06 gene_region:40585640-40586725 transcript_region:SL2.40ch06:40585640..40586725+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 **-- D7LRK8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00007633g0006.1 protein AED:0.00 eAED:0.00 QI:45|1|1|1|1|1|2|494|127; (*GB) gi|351724167|ref|NP_001238072.1| (e_value=3e-29) uncharacterized protein LOC100527060 [Glycine max];; (*TAIR) AT5G63135.1 (e_value=2e-23) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25325253-25326440 REVERSE LENGTH=99;; (*ITAG) Solyc03g112290.2.1 (e_value=1e-40) genomic_reference:SL2.40ch03 gene_region:56789943-56794206 transcript_region:SL2.40ch03:56789943..56794206+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016078g0008.1 protein AED:0.14 eAED:0.26 QI:0|0.6|0.5|1|0.6|0.33|6|0|761; (*GB) gi|359478712|ref|XP_002282519.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255350 [Vitis vinifera];; (*SWP) sp|Q9SJJ3|BLH8_ARATH (e_value=2e-86) BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana GN=BLH8 PE=1 SV=1;; (*TAIR) AT2G27990.1 (e_value=2e-87) | Symbols: BLH8, PNF | BEL1-like homeodomain 8 | chr2:11921540-11923902 REVERSE LENGTH=584;; (*ITAG) Solyc11g069890.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51585084-51589846 transcript_region:SL2.40ch11:51585084..51589846- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 8 (AHRD V1 *--- BLH8_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00004083g0015.1 protein AED:0.16 eAED:0.20 QI:157|0.85|0.8|1|0.92|0.93|15|0|522; (*GB) gi|302399067|gb|ADL36828.1| (e_value=0.0) TCP domain class transcription factor [Malus x domestica];; (*SWP) sp|P80317|TCPZ_MOUSE (e_value=0.0) T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3;; (*TAIR) AT3G02530.1 (e_value=0.0) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00004083g0014.1 protein AED:0.23 eAED:0.23 QI:230|1|0.92|1|0.75|0.84|13|179|383; (*GB) gi|77745475|gb|ABB02636.1| (e_value=0.0) RAD23-like [Solanum tuberosum];; (*SWP) sp|Q40742|RAD23_ORYSJ (e_value=2e-139) Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2;; (*TAIR) AT3G02540.1 (e_value=6e-133) | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair protein family | chr3:533095-536151 REVERSE LENGTH=419;; (*ITAG) Solyc02g063130.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:29750711-29757113 transcript_region:SL2.40ch02:29750711..29757113- go_terms:GO:0031593,GO:0070628 functional_description:"UV excision repair protein RAD23 (AHRD V1 ***- B6JX15_SCHJY); contains Interpro domain(s) IPR004806 UV excision repair protein Rad23 "; GO:0031593,GO:0070628 NbS00004083g0016.1 protein AED:0.43 eAED:1.00 QI:60|0|0|1|0|0|2|0|43 NbS00036282g0010.1 protein AED:0.31 eAED:0.31 QI:0|0.92|0.85|1|0.76|0.78|14|422|647; (*GB) gi|225450975|ref|XP_002284757.1| (e_value=0.0) PREDICTED: mitochondrial Rho GTPase 1 [Vitis vinifera];; (*SWP) sp|P0CO78|GEM1_CRYNJ (e_value=5e-132) Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GEM1 PE=3 SV=1;; (*TAIR) AT5G27540.2 (e_value=0.0) | Symbols: MIRO1 | MIRO-related GTP-ase 1 | chr5:9722816-9727112 FORWARD LENGTH=648;; (*ITAG) Solyc01g098920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81047454-81059347 transcript_region:SL2.40ch01:81047454..81059347+ go_terms:GO:0003924 functional_description:"Mitochondrial Rho GTPase 1 (AHRD V1 **** B2WA10_PYRTR); contains Interpro domain(s) IPR013567 EF hand associated, type-2 "; GO:0003924 NbS00036282g0009.1 protein AED:0.14 eAED:0.14 QI:198|1|1|1|1|1|2|305|227; (*GB) gi|255542622|ref|XP_002512374.1| (e_value=3e-79) cyclin-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q75HV0|CCP31_ORYSJ (e_value=2e-64) Cyclin-P3-1 OS=Oryza sativa subsp. japonica GN=CYCP3-1 PE=3 SV=1;; (*TAIR) AT3G05327.1 (e_value=3e-54) | Symbols: | Cyclin family protein | chr3:1517581-1518399 REVERSE LENGTH=212;; (*ITAG) Solyc01g098930.2.1 (e_value=5e-149) genomic_reference:SL2.40ch01 gene_region:81062071-81063123 transcript_region:SL2.40ch01:81062071..81063123- go_terms:GO:0005515,GO:0016538 functional_description:"Cyclin (AHRD V1 **** D8UD80_VOLCA); contains Interpro domain(s) IPR012389 Negative regulatory factor PREG "; GO:0005515,GO:0016538 NbS00046298g0003.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|176; (*GB) gi|224074506|ref|XP_002304382.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT4G19150.2 (e_value=1e-21) | Symbols: | Ankyrin repeat family protein | chr4:10471578-10472240 REVERSE LENGTH=220;; (*ITAG) Solyc08g005520.2.1 (e_value=3e-61) genomic_reference:SL2.40ch08 gene_region:386155-390404 transcript_region:SL2.40ch08:386155..390404- go_terms:GO:0042803 functional_description:"Ankyrin repeat domain protein (AHRD V1 *-*- B3CPL5_WOLPP); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00019183g0016.1 protein AED:0.04 eAED:0.04 QI:148|1|0.85|1|0.33|0.42|7|418|365; (*ITAG) Solyc05g050740.2.1 (e_value=2e-100) genomic_reference:SL2.40ch05 gene_region:60018960-60028258 transcript_region:SL2.40ch05:60018960..60028258+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019183g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|225462170|ref|XP_002267478.1| (e_value=1e-65) PREDICTED: 60S ribosomal protein L27 [Vitis vinifera];; (*SWP) sp|P41101|RL27_SOLTU (e_value=4e-64) 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1;; (*TAIR) AT4G15000.1 (e_value=7e-63) | Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135;; (*ITAG) Solyc06g073300.1.1 (e_value=2e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41549960-41550367 transcript_region:SL2.40ch06:41549960..41550367- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "; GO:0003735 NbS00019183g0010.1 protein AED:0.22 eAED:0.23 QI:0|0|0|1|1|1|2|0|101; (*GB) gi|351723557|ref|NP_001237283.1| (e_value=3e-23) uncharacterized protein LOC100527268 [Glycine max];; (*TAIR) AT1G50720.1 (e_value=2e-24) | Symbols: | Stigma-specific Stig1 family protein | chr1:18789180-18789644 REVERSE LENGTH=154;; (*ITAG) Solyc06g073220.1.1 (e_value=6e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41506988-41507440 transcript_region:SL2.40ch06:41506988..41507440+ functional_description:"Stig1 (Fragment) (AHRD V1 *-*- Q9SBR0_PETHY); contains Interpro domain(s) IPR006969 Stigma-specific protein Stig1 "; NbS00019183g0015.1 protein AED:0.23 eAED:0.23 QI:243|1|1|1|1|1|4|469|254; (*GB) gi|224067580|ref|XP_002302509.1| (e_value=2e-105) predicted protein [Populus trichocarpa];; (*TAIR) AT3G60450.1 (e_value=3e-103) | Symbols: | Phosphoglycerate mutase family protein | chr3:22340982-22342187 FORWARD LENGTH=274;; (*ITAG) Solyc05g050800.2.1 (e_value=6e-174) genomic_reference:SL2.40ch05 gene_region:60131934-60136497 transcript_region:SL2.40ch05:60131934..60136497- functional_description:"Phosphoglycerate mutase family protein (AHRD V1 ***- C3SAD0_BRADI); contains Interpro domain(s) IPR012398 PRIB5 "; NbS00045655g0004.1 protein AED:0.27 eAED:0.27 QI:300|1|1|1|1|1|4|282|146; (*GB) gi|359481634|ref|XP_003632650.1| (e_value=7e-89) PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9SJ44|UEV1C_ARATH (e_value=4e-86) Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1;; (*TAIR) AT2G36060.1 (e_value=3e-87) | Symbols: MMZ3, UEV1C | MMS ZWEI homologue 3 | chr2:15143012-15143998 REVERSE LENGTH=145;; (*ITAG) Solyc10g083120.1.1 (e_value=5e-90) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62310434-62314944 transcript_region:SL2.40ch10:62310434..62314944- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme family protein-like (AHRD V1 ***- Q3HVN0_SOLTU); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00059220g0001.1 protein AED:0.20 eAED:0.20 QI:286|0.7|0.54|0.81|1|1|11|746|645; (*GB) gi|239056181|emb|CAQ58617.1| (e_value=0.0) transferase, transferring glycosyl groups / unknown protein [Vitis vinifera];; (*SWP) sp|Q9ZVI7|GAUT7_ARATH (e_value=0.0) Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2;; (*TAIR) AT2G38650.2 (e_value=0.0) | Symbols: GAUT7 | galacturonosyltransferase 7 | chr2:16161856-16165523 REVERSE LENGTH=619;; (*ITAG) Solyc10g074650.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57519701-57532985 transcript_region:SL2.40ch10:57519701..57532985- go_terms:GO:0016757 functional_description:"Glycosyl transferase family 8 (AHRD V1 **-- A2Q3W2_MEDTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00048918g0009.1 protein AED:0.20 eAED:0.20 QI:154|0.76|0.92|1|0.69|0.71|14|338|836; (*GB) gi|34393748|dbj|BAC84950.1| (e_value=0.0) PHCLF1 [Petunia x hybrida];; (*SWP) sp|Q8S4P6|EZ1_MAIZE (e_value=0.0) Histone-lysine N-methyltransferase EZ1 OS=Zea mays GN=EZ1 PE=2 SV=1;; (*TAIR) AT2G23380.1 (e_value=0.0) | Symbols: CLF, ICU1, SDG1, SET1 | SET domain-containing protein | chr2:9955570-9960117 FORWARD LENGTH=902;; (*ITAG) Solyc03g044380.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:12923432-12932842 transcript_region:SL2.40ch03:12923432..12932842+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00048918g0008.1 protein AED:0.12 eAED:0.13 QI:106|0.37|0.22|1|0.62|0.44|9|99|1378; (*GB) gi|255566446|ref|XP_002524208.1| (e_value=0.0) Phosphoribosylformylglycinamidine synthase, putative [Ricinus communis];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=0.0) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=0.0) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc02g076720.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36422621-36428170 transcript_region:SL2.40ch02:36422621..36428170- go_terms:GO:0004642 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 **** A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0004642 NbS00021848g0006.1 protein AED:0.06 eAED:0.06 QI:0|0|0|1|1|1|2|0|346; (*GB) gi|225426354|ref|XP_002266149.1| (e_value=3e-60) PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera];; (*SWP) sp|Q5SN75|P2C08_ORYSJ (e_value=2e-51) Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1;; (*TAIR) AT1G07430.1 (e_value=3e-41) | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | chr1:2281151-2282656 REVERSE LENGTH=442;; (*ITAG) Solyc08g082260.1.1 (e_value=1e-105) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62265564-62267353 transcript_region:SL2.40ch08:62265564..62267353- go_terms:GO:0004722,GO:0008022 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_RAT); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722,GO:0008022 NbS00021848g0002.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.77|1|1|1|9|0|575; (*GB) gi|350535030|ref|NP_001234172.1| (e_value=0.0) endo-beta-1,4-D-glucanase precursor [Solanum lycopersicum];; (*SWP) sp|Q42059|GUN6_ARATH (e_value=0.0) Endoglucanase 6 OS=Arabidopsis thaliana GN=At1g64390 PE=2 SV=2;; (*TAIR) AT1G64390.1 (e_value=0.0) | Symbols: AtGH9C2, GH9C2 | glycosyl hydrolase 9C2 | chr1:23911329-23914642 FORWARD LENGTH=620;; (*ITAG) Solyc08g082250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:62259660-62264948 transcript_region:SL2.40ch08:62259660..62264948+ go_terms:GO:0030246,GO:0005576,GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR012341 Six-hairpin glycosidase IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0030246,GO:0005576,GO:0005975,GO:0003824 NbS00035059g0009.1 protein AED:0.10 eAED:0.10 QI:197|0.5|0.33|1|0.5|0.66|3|0|334; (*GB) gi|359483831|ref|XP_003633023.1| (e_value=9e-150) PREDICTED: dnaJ homolog subfamily B member 13 isoform 2 [Vitis vinifera];; (*SWP) sp|Q80Y75|DJB13_MOUSE (e_value=1e-63) DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1;; (*TAIR) AT2G20560.1 (e_value=7e-130) | Symbols: | DNAJ heat shock family protein | chr2:8848353-8849815 REVERSE LENGTH=337;; (*ITAG) Solyc02g077670.2.1 (e_value=4e-137) genomic_reference:SL2.40ch02 gene_region:37137141-37141307 transcript_region:SL2.40ch02:37137141..37141307- go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ 2 (AHRD V1 ***- DNAJ2_ARATH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00035059g0002.1 protein AED:0.14 eAED:0.15 QI:477|0.78|0.75|0.95|1|1|20|0|1659; (*GB) gi|255536725|ref|XP_002509429.1| (e_value=0.0) homeobox protein, putative [Ricinus communis];; (*TAIR) AT1G28420.1 (e_value=0.0) | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 FORWARD LENGTH=1705;; (*ITAG) Solyc02g077660.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:37124373-37136943 transcript_region:SL2.40ch02:37124373..37136943+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein EgHBX4 (Fragment) (AHRD V1 *--- HBX4_ECHGR); contains Interpro domain(s) IPR018500 DDT subgroup "; GO:0006355,GO:0045449 NbS00014112g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.83|0.71|1|0.33|0.28|7|345|461; (*GB) gi|297740383|emb|CBI30565.3| (e_value=5e-99) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09430.1 (e_value=1e-82) | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2901280-2902893 FORWARD LENGTH=301;; (*ITAG) Solyc09g010710.2.1 (e_value=7e-136) genomic_reference:SL2.40ch09 gene_region:4026081-4029219 transcript_region:SL2.40ch09:4026081..4029219- functional_description:"Unknown Protein (AHRD V1)"; NbS00014112g0010.1 protein AED:0.22 eAED:0.30 QI:0|0.33|0.14|0.71|0.83|0.71|7|0|445; (*GB) gi|365222870|gb|AEW69787.1| (e_value=1e-171) Hop-interacting protein THI015 [Solanum lycopersicum];; (*SWP) sp|Q94B55|XB31_ARATH (e_value=7e-113) Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1;; (*TAIR) AT2G28840.2 (e_value=3e-114) | Symbols: XBAT31 | XB3 ortholog 1 in Arabidopsis thaliana | chr2:12378672-12380474 FORWARD LENGTH=442;; (*ITAG) Solyc09g010690.2.1 (e_value=2e-174) genomic_reference:SL2.40ch09 gene_region:4016066-4020196 transcript_region:SL2.40ch09:4016066..4020196+ go_terms:GO:0005200 functional_description:"Ankyrin repeat domain-containing protein 28 (AHRD V1 ***- B6TJ47_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005200 NbS00014908g0005.1 protein AED:0.10 eAED:0.23 QI:0|0|0|0.8|0.25|0.2|5|0|151; (*GB) gi|8163950|gb|AAF73933.1|AF230704_1 (e_value=1e-66) MADS box transcription factor TM6 [Petunia x hybrida];; (*SWP) sp|P23706|DEFA_ANTMA (e_value=1e-46) Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1;; (*TAIR) AT3G54340.1 (e_value=7e-42) | Symbols: AP3, ATAP3 | K-box region and MADS-box transcription factor family protein | chr3:20119428-20121087 REVERSE LENGTH=232;; (*ITAG) Solyc02g084630.2.1 (e_value=5e-71) genomic_reference:SL2.40ch02 gene_region:42291414-42295184 transcript_region:SL2.40ch02:42291414..42295184- go_terms:GO:0003677 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q4LEZ4_ASPOF); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00010040g0007.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.75|0|0|4|0|186; (*GB) gi|359806236|ref|NP_001241466.1| (e_value=2e-17) uncharacterized protein LOC100815072 [Glycine max];; (*ITAG) Solyc09g072930.1.1 (e_value=8e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61104483-61105643 transcript_region:SL2.40ch09:61104483..61105643- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00043565g0002.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|142; (*GB) gi|326510025|dbj|BAJ87229.1| (e_value=2e-24) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G21150.1 (e_value=5e-25) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:7406406-7407578 REVERSE LENGTH=390;; (*ITAG) Solyc11g022600.1.1 (e_value=2e-78) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:14689832-14690913 transcript_region:SL2.40ch11:14689832..14690913- functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q6Z8L0_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00045100g0009.1 protein AED:0.24 eAED:0.24 QI:509|0.66|0.5|1|0.66|0.75|4|0|265; (*GB) gi|4580920|gb|AAD24540.1|AF113545_1 (e_value=3e-179) vacuole-associated annexin VCaB42 [Nicotiana tabacum];; (*SWP) sp|Q9XEE2|ANXD2_ARATH (e_value=5e-129) Annexin D2 OS=Arabidopsis thaliana GN=ANN2 PE=2 SV=1;; (*TAIR) AT5G65020.1 (e_value=4e-130) | Symbols: ANNAT2 | annexin 2 | chr5:25973915-25975554 FORWARD LENGTH=317;; (*ITAG) Solyc04g055170.2.1 (e_value=2e-167) genomic_reference:SL2.40ch04 gene_region:52933311-52937146 transcript_region:SL2.40ch04:52933311..52937146- go_terms:GO:0005544,GO:0019834 functional_description:"Annexin 2 (AHRD V1 ***- A9X4R2_BRAJU); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544,GO:0019834 NbS00045100g0007.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|0|0|2|0|62 NbS00045100g0008.1 protein AED:0.21 eAED:0.21 QI:0|1|0.8|1|1|1|5|774|370; (*GB) gi|356567722|ref|XP_003552066.1| (e_value=9e-153) PREDICTED: uncharacterized protein LOC100804656 [Glycine max];; (*TAIR) AT4G39860.1 (e_value=9e-133) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499909-18501472 FORWARD LENGTH=299;; (*ITAG) Solyc04g055160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52930068-52933201 transcript_region:SL2.40ch04:52930068..52933201+ functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbC25620090g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|62241065|dbj|BAD93689.1| (e_value=8e-121) glycosyltransferase [Nicotiana tabacum];; (*SWP) sp|Q9ZWJ3|U85A2_ARATH (e_value=2e-80) UDP-glycosyltransferase 85A2 OS=Arabidopsis thaliana GN=UGT85A2 PE=2 SV=1;; (*TAIR) AT1G22360.1 (e_value=1e-81) | Symbols: AtUGT85A2, UGT85A2 | UDP-glucosyl transferase 85A2 | chr1:7895068-7897527 REVERSE LENGTH=481;; (*ITAG) Solyc12g057060.1.1 (e_value=2e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48483142-48484774 transcript_region:SL2.40ch12:48483142..48484774- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase (AHRD V1 **-- Q5UB81_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00010162g0002.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|187; (*GB) gi|225434205|ref|XP_002279785.1| (e_value=8e-117) PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Vitis vinifera];; (*SWP) sp|A4QND5|NIP7_XENTR (e_value=6e-80) 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1;; (*TAIR) AT4G15770.1 (e_value=1e-110) | Symbols: | RNA binding | chr4:8978060-8978623 FORWARD LENGTH=187;; (*ITAG) Solyc01g098100.2.1 (e_value=1e-135) genomic_reference:SL2.40ch01 gene_region:80462444-80463233 transcript_region:SL2.40ch01:80462444..80463233+ go_terms:GO:0005515 functional_description:"60S ribosome subunit biogenesis protein NIP7 (AHRD V1 ***- B4FKM9_MAIZE); contains Interpro domain(s) IPR016686 Ribosome biogenesis factor, NIP7 "; GO:0005515 NbS00010162g0010.1 protein AED:0.19 eAED:0.20 QI:0|1|0.5|1|1|1|2|0|287; (*GB) gi|225430133|ref|XP_002284708.1| (e_value=6e-28) PREDICTED: uncharacterized protein LOC100264664 [Vitis vinifera];; (*TAIR) AT4G32680.1 (e_value=2e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52343.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15763462-15765039 REVERSE LENGTH=282;; (*ITAG) Solyc08g068060.2.1 (e_value=2e-149) genomic_reference:SL2.40ch08 gene_region:54362065-54365885 transcript_region:SL2.40ch08:54362065..54365885+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010162g0015.1 protein AED:0.24 eAED:0.24 QI:336|0.9|0.90|1|0.9|0.90|11|0|359; (*GB) gi|224143034|ref|XP_002324827.1| (e_value=1e-115) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25580.1 (e_value=3e-91) | Symbols: | BEST Arabidopsis thaliana protein match is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178 Blast hits to 178 proteins in 75 species: Archae - 0; Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60; Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink). | chr5:8903550-8906108 FORWARD LENGTH=405;; (*ITAG) Solyc08g068050.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54352106-54359570 transcript_region:SL2.40ch08:54352106..54359570+ functional_description:"Os07g0193600 protein (Fragment) (AHRD V1 **-- Q0D802_ORYSJ)"; NbS00010162g0014.1 protein AED:0.35 eAED:0.35 QI:146|1|1|1|0.5|0.33|3|261|201; (*GB) gi|224142087|ref|XP_002324390.1| (e_value=1e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|P36525|RM24_YEAST (e_value=2e-13) 54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2;; (*TAIR) AT4G31460.1 (e_value=5e-88) | Symbols: | Ribosomal L28 family | chr4:15259773-15260847 REVERSE LENGTH=212;; (*ITAG) Solyc08g065760.2.1 (e_value=4e-126) genomic_reference:SL2.40ch08 gene_region:51280952-51284144 transcript_region:SL2.40ch08:51280952..51284144- go_terms:GO:0005840 functional_description:"50S ribosomal protein L28 (AHRD V1 *-*- D5BMV5_PUNMI); contains Interpro domain(s) IPR001383 Ribosomal protein L28 "; GO:0005840 NbS00042337g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.6|0.54|0.90|0.7|0.81|11|384|512; (*GB) gi|5734587|emb|CAB52797.1| (e_value=0.0) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q55CD9|NDH_DICDI (e_value=2e-61) Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2;; (*TAIR) AT4G28220.1 (e_value=0.0) | Symbols: NDB1 | NAD(P)H dehydrogenase B1 | chr4:13993078-13995651 FORWARD LENGTH=571;; (*ITAG) Solyc10g008630.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2704288-2710170 transcript_region:SL2.40ch10:2704288..2710170+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00004844g0008.1 protein AED:0.12 eAED:0.12 QI:13|1|0.83|1|1|1|6|0|520; (*GB) gi|255577171|ref|XP_002529469.1| (e_value=0.0) endo-1,4-beta-glucanase, putative [Ricinus communis];; (*SWP) sp|O48766|GUN11_ARATH (e_value=0.0) Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990 PE=2 SV=1;; (*TAIR) AT2G32990.1 (e_value=0.0) | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 | chr2:14003361-14005844 FORWARD LENGTH=525;; (*ITAG) Solyc07g064870.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64070313-64075930 transcript_region:SL2.40ch07:64070313..64075930- go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00049386g0011.1 protein AED:0.27 eAED:0.28 QI:245|0.77|0.7|1|0.66|0.6|10|0|697; (*GB) gi|225460139|ref|XP_002275897.1| (e_value=3e-171) PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9C9I3|PP115_ARATH (e_value=1e-152) Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1;; (*TAIR) AT1G71460.1 (e_value=8e-154) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:26928247-26930316 REVERSE LENGTH=689;; (*ITAG) Solyc07g052590.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58387932-58389956 transcript_region:SL2.40ch07:58387932..58389956- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00049386g0001.1 protein AED:0.45 eAED:0.55 QI:0|-1|0|1|-1|1|1|0|185; (*GB) gi|147774530|emb|CAN65544.1| (e_value=4e-60) hypothetical protein VITISV_018576 [Vitis vinifera];; (*SWP) sp|Q9C9I3|PP115_ARATH (e_value=9e-58) Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1;; (*TAIR) AT1G71460.1 (e_value=7e-59) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:26928247-26930316 REVERSE LENGTH=689;; (*ITAG) Solyc07g052590.1.1 (e_value=7e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58387932-58389956 transcript_region:SL2.40ch07:58387932..58389956- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00048087g0004.1 protein AED:0.28 eAED:0.50 QI:0|1|0|1|1|1|2|0|98 NbS00048087g0005.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|0.66|1|4|393|192; (*GB) gi|359497194|ref|XP_003635450.1| (e_value=6e-31) PREDICTED: uncharacterized protein LOC100853798 [Vitis vinifera];; (*ITAG) Solyc04g055250.2.1 (e_value=2e-52) genomic_reference:SL2.40ch04 gene_region:53024745-53031415 transcript_region:SL2.40ch04:53024745..53031415- functional_description:"Unknown Protein (AHRD V1)"; NbS00021582g0002.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|200; (*GB) gi|12003388|gb|AAG43551.1|AF211533_1 (e_value=3e-81) Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum];; (*TAIR) AT1G52140.1 (e_value=2e-41) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:19407559-19408185 REVERSE LENGTH=208;; (*ITAG) Solyc12g044420.1.1 (e_value=4e-79) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44819972-44820619 transcript_region:SL2.40ch12:44819972..44820619- functional_description:"Avr9/Cf-9 rapidly elicited protein 146 (AHRD V1 **-- Q9FQZ6_TOBAC)"; NbS00021582g0014.1 protein AED:0.36 eAED:0.45 QI:0|0|0|0.66|0|0.33|3|0|123; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-18) hypothetical protein [Nicotiana tabacum]; NbS00021582g0015.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.2|1|1|5|0|116 NbS00021582g0013.1 protein AED:0.08 eAED:0.08 QI:40|1|1|1|0.5|0.33|3|96|378; (*GB) gi|224116148|ref|XP_002317225.1| (e_value=6e-122) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79760.1 (e_value=3e-38) | Symbols: DTA4 | downstream target of AGL15-4 | chr1:30012054-30013042 FORWARD LENGTH=299;; (*ITAG) Solyc03g120970.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63244294-63246602 transcript_region:SL2.40ch03:63244294..63246602- go_terms:GO:0016491 functional_description:"Gibberellin 2-beta-dioxygenase 2 (AHRD V1 ***- G2OX2_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00021582g0016.1 protein AED:0.21 eAED:0.21 QI:0|0.77|0.6|0.9|0.77|0.8|10|0|366; (*GB) gi|225442489|ref|XP_002283948.1| (e_value=3e-68) PREDICTED: uncharacterized protein LOC100258357 [Vitis vinifera];; (*TAIR) AT1G15215.2 (e_value=7e-68) | Symbols: | BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5238096-5239770 FORWARD LENGTH=258;; (*ITAG) Solyc03g120940.2.1 (e_value=5e-126) genomic_reference:SL2.40ch03 gene_region:63232523-63237150 transcript_region:SL2.40ch03:63232523..63237150- functional_description:"Os06g0483900 protein (Fragment) (AHRD V1 *-*- Q0DC52_ORYSJ)"; NbS00028761g0004.1 protein AED:0.12 eAED:0.16 QI:0|0|0|1|0|0|4|0|550; (*GB) gi|356600306|gb|AET22504.1| (e_value=5e-94) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=4e-58) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=2e-42) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc10g008220.2.1 (e_value=3e-99) genomic_reference:SL2.40ch10 gene_region:2335367-2338246 transcript_region:SL2.40ch10:2335367..2338246+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00038354g0006.1 protein AED:0.37 eAED:0.38 QI:16|1|0.75|1|1|1|4|301|219; (*GB) gi|255586109|ref|XP_002533718.1| (e_value=2e-70) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|P07602|SAP_HUMAN (e_value=8e-17) Proactivator polypeptide OS=Homo sapiens GN=PSAP PE=1 SV=2;; (*TAIR) AT3G51730.1 (e_value=1e-59) | Symbols: | saposin B domain-containing protein | chr3:19186970-19188436 FORWARD LENGTH=213;; (*ITAG) Solyc09g042700.2.1 (e_value=8e-110) genomic_reference:SL2.40ch09 gene_region:29530055-29533929 transcript_region:SL2.40ch09:29530055..29533929- go_terms:GO:0005764,GO:0006629 functional_description:"Proactivator polypeptide (AHRD V1 **-- C0H9G6_SALSA); contains Interpro domain(s) IPR011001 Saposin-like "; GO:0005764,GO:0006629 NbS00010241g0024.1 protein AED:0.18 eAED:0.18 QI:328|0.85|0.75|1|0.71|0.75|8|686|278; (*GB) gi|224141903|ref|XP_002324300.1| (e_value=1e-94) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32272.1 (e_value=3e-62) | Symbols: | Nucleotide/sugar transporter family protein | chr4:15577195-15579689 REVERSE LENGTH=344;; (*ITAG) Solyc08g066970.2.1 (e_value=5e-103) genomic_reference:SL2.40ch08 gene_region:53067358-53074378 transcript_region:SL2.40ch08:53067358..53074378+ go_terms:GO:0005458,GO:0005463 functional_description:"UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (AHRD V1 **** C3KHT2_ANOFI)"; GO:0005458,GO:0005463 NbS00010241g0020.1 protein AED:0.19 eAED:0.19 QI:291|1|1|1|0.8|0.66|6|636|214; (*GB) gi|296082049|emb|CBI21054.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G25340.1 (e_value=1e-34) | Symbols: | Ubiquitin-like superfamily protein | chr5:8793238-8794211 FORWARD LENGTH=208;; (*ITAG) Solyc08g023630.2.1 (e_value=1e-92) genomic_reference:SL2.40ch08 gene_region:17628214-17630078 transcript_region:SL2.40ch08:17628214..17630078+ functional_description:"U11/U12 small nuclear ribonucleoprotein 25 kDa protein (AHRD V1 *-*- SNR25_MOUSE)"; NbS00010241g0023.1 protein AED:0.11 eAED:0.19 QI:62|0|0|1|0|0.25|4|0|259; (*ITAG) Solyc09g007220.1.1 (e_value=8e-62) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:830925-831881 transcript_region:SL2.40ch09:830925..831881- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00010241g0007.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|118485650|gb|ABK94675.1| (e_value=1e-43) unknown [Populus trichocarpa];; (*SWP) sp|P31853|ATPX_SPIOL (e_value=3e-42) ATP synthase subunit b', chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2;; (*TAIR) AT4G32260.1 (e_value=2e-40) | Symbols: | ATPase, F0 complex, subunit B/B', bacterial/chloroplast | chr4:15573859-15574586 REVERSE LENGTH=219;; (*ITAG) Solyc06g066000.1.1 (e_value=7e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:37752991-37753662 transcript_region:SL2.40ch06:37752991..37753662- go_terms:GO:0045263 functional_description:"ATP synthase subunit b&apos (AHRD V1 ***- D8G4T7_9CYAN); contains Interpro domain(s) IPR002146 ATPase, F0 complex, subunit B/B', bacterial and chloroplast "; GO:0045263 NbS00010241g0022.1 protein AED:0.06 eAED:0.06 QI:75|1|1|1|1|0.66|3|113|224; (*GB) gi|365818557|gb|AEX00367.1| (e_value=2e-61) IAA29 [Solanum lycopersicum];; (*SWP) sp|P33078|IAA5_ARATH (e_value=1e-21) Auxin-responsive protein IAA5 OS=Arabidopsis thaliana GN=IAA5 PE=2 SV=3;; (*TAIR) AT1G15580.1 (e_value=9e-23) | Symbols: IAA5, ATAUX2-27, AUX2-27 | indole-3-acetic acid inducible 5 | chr1:5365764-5366460 REVERSE LENGTH=163;; (*ITAG) Solyc08g021820.2.1 (e_value=5e-64) genomic_reference:SL2.40ch08 gene_region:9926828-9928295 transcript_region:SL2.40ch08:9926828..9928295- go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00010241g0026.1 protein AED:0.16 eAED:0.16 QI:1811|0.92|1|1|0.46|0.5|14|1682|189; (*GB) gi|359476140|ref|XP_002282711.2| (e_value=8e-46) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=1e-18) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G56120.1 (e_value=2e-21) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:20987288-20993072 REVERSE LENGTH=1047;; (*ITAG) Solyc07g066550.2.1 (e_value=2e-20) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00041103g0004.1 protein AED:0.29 eAED:0.29 QI:0|1|1|1|1|1|8|402|368; (*GB) gi|359487591|ref|XP_003633617.1| (e_value=2e-140) PREDICTED: G patch domain-containing protein 8-like [Vitis vinifera];; (*SWP) sp|A2A6A1|GPTC8_MOUSE (e_value=1e-30) G patch domain-containing protein 8 OS=Mus musculus GN=Gpatch8 PE=2 SV=1;; (*TAIR) AT5G26610.3 (e_value=4e-110) | Symbols: | D111/G-patch domain-containing protein | chr5:9375456-9376991 FORWARD LENGTH=301;; (*ITAG) Solyc01g101250.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:82824272-82828065 transcript_region:SL2.40ch01:82824272..82828065- go_terms:GO:0005622 functional_description:"D111/G-patch domain-containing protein (AHRD V1 **-- D7M5C5_ARALY); contains Interpro domain(s) IPR000467 D111/G-patch "; GO:0005622 NbS00010554g0005.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|2|333|517; (*GB) gi|88174761|gb|ABD39485.1| (e_value=0.0) CYP82E2v4 [Nicotiana tabacum];; (*SWP) sp|O49859|C82A4_SOYBN (e_value=3e-145) Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1;; (*TAIR) AT4G31940.1 (e_value=1e-144) | Symbols: CYP82C4 | cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524;; (*ITAG) Solyc04g007940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00010554g0106.1 protein AED:0.11 eAED:0.11 QI:126|0.90|0.91|1|1|1|12|400|438 NbS00007723g0008.1 protein AED:0.12 eAED:0.12 QI:0|0.87|0.88|1|1|1|9|98|682; (*GB) gi|225464505|ref|XP_002272128.1| (e_value=5e-166) PREDICTED: uncharacterized protein LOC100262848 [Vitis vinifera];; (*TAIR) AT4G25610.1 (e_value=1e-82) | Symbols: | C2H2-like zinc finger protein | chr4:13063801-13066860 FORWARD LENGTH=586;; (*ITAG) Solyc03g025440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7231513-7236551 transcript_region:SL2.40ch03:7231513..7236551- go_terms:GO:0003676 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MFZ1_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676 NbS00007723g0004.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.66|1|1|3|0|166; (*GB) gi|224134873|ref|XP_002321926.1| (e_value=5e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT5G52420.1 (e_value=1e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21281817-21282545 FORWARD LENGTH=242;; (*ITAG) Solyc03g025430.1.1 (e_value=4e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7230035-7230754 transcript_region:SL2.40ch03:7230035..7230754+ functional_description:"Genomic DNA chromosome 5 TAC clone K24M7 (AHRD V1 **-- Q9FHB8_ARATH)"; NbS00003666g0004.1 protein AED:0.33 eAED:0.33 QI:0|0|0|1|0|0|3|0|144; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-38) hypothetical protein [Nicotiana tabacum]; NbS00018111g0008.1 protein AED:0.20 eAED:0.20 QI:0|0.14|0|0.37|0.85|0.87|8|0|426; (*GB) gi|225468729|ref|XP_002271512.1| (e_value=4e-118) PREDICTED: uncharacterized protein LOC100266157 [Vitis vinifera];; (*TAIR) AT5G14090.1 (e_value=6e-46) | Symbols: | unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:4547230-4549214 FORWARD LENGTH=358;; (*ITAG) Solyc05g015880.2.1 (e_value=1e-160) genomic_reference:SL2.40ch05 gene_region:12616663-12619235 transcript_region:SL2.40ch05:12616663..12619235- functional_description:"Genomic DNA chromosome 5 P1 clone MUA22 (AHRD V1 ***- Q9FMU1_ARATH)"; NbS00018111g0005.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|0|1|0|169; (*GB) gi|381148024|gb|AFF60302.1| (e_value=9e-92) xyloglucanase-specific endoglucanase inhibitor [Solanum tuberosum];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=2e-21) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=4e-46) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g079920.2.1 (e_value=5e-84) genomic_reference:SL2.40ch01 gene_region:71589234-71592343 transcript_region:SL2.40ch01:71589234..71592343- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00038471g0004.1 protein AED:0.11 eAED:0.11 QI:0|1|0.9|1|1|1|10|0|335; (*GB) gi|225449525|ref|XP_002283615.1| (e_value=0.0) PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Vitis vinifera];; (*SWP) sp|Q9Y673|ALG5_HUMAN (e_value=2e-87) Dolichyl-phosphate beta-glucosyltransferase OS=Homo sapiens GN=ALG5 PE=1 SV=1;; (*TAIR) AT2G39630.1 (e_value=0.0) | Symbols: | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:16522008-16524561 REVERSE LENGTH=336;; (*ITAG) Solyc05g054460.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63531889-63536711 transcript_region:SL2.40ch05:63531889..63536711+ go_terms:GO:0004581,GO:0004576 functional_description:"Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (AHRD V1 **** ARNC_SERP5); contains Interpro domain(s) IPR001173 Glycosyl transferase, family 2 "; GO:0004581,GO:0004576 NbS00009362g0004.1 protein AED:0.03 eAED:0.03 QI:0|0|0|1|1|1|3|0|682; (*GB) gi|328497225|dbj|BAK18779.1| (e_value=0.0) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*SWP) sp|P30986|RETO_ESCCA (e_value=5e-95) Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1;; (*TAIR) AT4G20860.1 (e_value=9e-92) | Symbols: | FAD-binding Berberine family protein | chr4:11172726-11174318 FORWARD LENGTH=530;; (*ITAG) Solyc04g080400.1.1 (e_value=1e-165) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00009362g0016.1 protein AED:0.17 eAED:0.17 QI:0|0.5|0.54|1|0.3|0.36|11|339|500; (*GB) gi|296081295|emb|CBI17739.3| (e_value=3e-141) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1R2|PPA24_ARATH (e_value=3e-23) Probable inactive purple acid phosphatase 24 OS=Arabidopsis thaliana GN=PAP24 PE=2 SV=1;; (*TAIR) AT4G24890.1 (e_value=2e-24) | Symbols: ATPAP24, PAP24 | purple acid phosphatase 24 | chr4:12811510-12814440 REVERSE LENGTH=615;; (*ITAG) Solyc01g068380.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69972924-69982844 transcript_region:SL2.40ch01:69972924..69982844- go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 *-** B6TKL3_MAIZE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722,GO:0005515 NbS00009362g0015.1 protein AED:0.21 eAED:0.24 QI:0|0.71|0.75|1|0.57|0.5|8|456|986; (*GB) gi|224128195|ref|XP_002320267.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q76PD2|YJ01_SCHPO (e_value=7e-40) LIM domain and RING finger protein C1223.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2;; (*TAIR) AT3G62240.1 (e_value=0.0) | Symbols: | RING/U-box superfamily protein | chr3:23033592-23036653 REVERSE LENGTH=812;; (*ITAG) Solyc01g068390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69990846-69996128 transcript_region:SL2.40ch01:69990846..69996128- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LSV3_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00009362g0017.1 protein AED:0.12 eAED:0.12 QI:0|0.84|0.78|1|0.76|0.64|14|272|580; (*GB) gi|296081297|emb|CBI17741.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7SXA9|MUS81_DANRE (e_value=2e-23) Crossover junction endonuclease MUS81 OS=Danio rerio GN=mus81 PE=1 SV=1;; (*TAIR) AT4G30870.1 (e_value=0.0) | Symbols: ATMUS81, MUS81 | Restriction endonuclease, type II-like superfamily protein | chr4:15028586-15032461 FORWARD LENGTH=659;; (*ITAG) Solyc01g068340.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69946444-69955860 transcript_region:SL2.40ch01:69946444..69955860+ go_terms:GO:0006259,GO:0003677 functional_description:"Crossover junction endonuclease mus81 (AHRD V1 *-*- B6JXB7_SCHJY); contains Interpro domain(s) IPR006166 DNA repair nuclease, XPF-type/Helicase "; GO:0006259,GO:0003677 NbS00023137g0015.1 protein AED:0.23 eAED:0.24 QI:0|1|0.5|1|1|1|2|0|275; (*GB) gi|350539996|ref|NP_001234860.1| (e_value=0.0) mitochondrial succinate dehydrogenase iron sulfur subunit [Solanum lycopersicum];; (*SWP) sp|Q8LB02|DHSB2_ARATH (e_value=2e-161) Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2;; (*TAIR) AT5G40650.1 (e_value=1e-162) | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | chr5:16281462-16283296 FORWARD LENGTH=280;; (*ITAG) Solyc02g093680.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49014535-49017784 transcript_region:SL2.40ch02:49014535..49017784+ go_terms:GO:0000104,GO:0008270 functional_description:"Succinate dehydrogenase iron-sulfur protein (AHRD V1 **** C0NQC7_AJECG); contains Interpro domain(s) IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein "; GO:0000104,GO:0008270 NbS00023137g0014.1 protein AED:0.25 eAED:0.29 QI:0|0.70|0.61|1|0.64|0.5|18|339|910; (*GB) gi|356531969|ref|XP_003534548.1| (e_value=0.0) PREDICTED: protein RIC1 homolog isoform 2 [Glycine max];; (*SWP) sp|Q69ZJ7|RIC1_MOUSE (e_value=1e-47) Protein RIC1 homolog OS=Mus musculus GN=Kiaa1432 PE=2 SV=2;; (*TAIR) AT3G61480.1 (e_value=0.0) | Symbols: | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor | chr3:22749984-22756476 FORWARD LENGTH=1080;; (*ITAG) Solyc01g094880.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78036956-78052159 transcript_region:SL2.40ch01:78036956..78052159+ functional_description:"Protein RIC1 homolog (AHRD V1 **-- RIC1_MOUSE); contains Interpro domain(s) IPR009771 Protein of unknown function DUF1339 "; NbS00023137g0016.1 protein AED:0.17 eAED:0.18 QI:30|0.61|0.28|0.92|0.69|0.57|14|0|1186; (*GB) gi|350538147|ref|NP_001234329.1| (e_value=0.0) ferric-chelate reductase [Solanum lycopersicum];; (*SWP) sp|P92949|FRO2_ARATH (e_value=0.0) Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2;; (*TAIR) AT1G01580.1 (e_value=0.0) | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction oxidase 2 | chr1:209395-212810 FORWARD LENGTH=725;; (*ITAG) Solyc01g094910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78075479-78078751 transcript_region:SL2.40ch01:78075479..78078751- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0000293 NbS00012307g0001.1 protein AED:0.01 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|183; (*GB) gi|315661271|gb|ADU55564.1| (e_value=6e-23) transcriptional regulator superman [Malus x domestica];; (*SWP) sp|Q9SR34|TAC1_ARATH (e_value=9e-13) Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1;; (*TAIR) AT3G09290.1 (e_value=7e-14) | Symbols: TAC1 | telomerase activator1 | chr3:2856141-2856659 FORWARD LENGTH=172;; (*ITAG) Solyc09g089600.1.1 (e_value=3e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:64680671-64681246 transcript_region:SL2.40ch09:64680671..64681246+ go_terms:GO:0003700 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *--* D8RJS5_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00000253g0004.1 protein AED:0.38 eAED:0.38 QI:0|1|0.66|1|0.5|0.33|3|0|157; (*GB) gi|388498352|gb|AFK37242.1| (e_value=5e-98) unknown [Medicago truncatula];; (*SWP) sp|O42901|YBA9_SCHPO (e_value=8e-36) Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.09c PE=2 SV=3;; (*TAIR) AT5G42000.1 (e_value=2e-95) | Symbols: | ORMDL family protein | chr5:16799455-16800681 FORWARD LENGTH=154;; (*ITAG) Solyc08g082920.2.1 (e_value=3e-101) genomic_reference:SL2.40ch08 gene_region:62736967-62742549 transcript_region:SL2.40ch08:62736967..62742549- go_terms:GO:0042802 functional_description:"ORM1-like protein 2 (AHRD V1 ***- B4FEN2_MAIZE); contains Interpro domain(s) IPR007203 ORMDL "; GO:0042802 NbS00041014g0004.1 protein AED:0.31 eAED:0.37 QI:0|1|0.33|1|1|1|3|0|191; (*GB) gi|225449557|ref|XP_002283841.1| (e_value=2e-82) PREDICTED: CASP-like protein POPTRDRAFT_822486 [Vitis vinifera];; (*SWP) sp|B9HTK2|CSPLI_POPTR (e_value=2e-77) CASP-like protein POPTRDRAFT_822486 OS=Populus trichocarpa GN=POPTRDRAFT_822486 PE=3 SV=1;; (*TAIR) AT3G55390.1 (e_value=4e-64) | Symbols: | Uncharacterised protein family (UPF0497) | chr3:20534785-20535620 FORWARD LENGTH=194;; (*ITAG) Solyc05g054560.2.1 (e_value=1e-104) genomic_reference:SL2.40ch05 gene_region:63599769-63601868 transcript_region:SL2.40ch05:63599769..63601868+ functional_description:"UPF0497 membrane protein 2 (AHRD V1 ***- U4972_POPTR); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00005679g0007.1 protein AED:0.16 eAED:0.16 QI:0|0.25|0.2|0.8|0.5|0.2|5|0|378; (*GB) gi|255538722|ref|XP_002510426.1| (e_value=3e-141) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q54DY9|BCS1B_DICDI (e_value=7e-16) Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1;; (*TAIR) AT3G50930.1 (e_value=7e-110) | Symbols: BCS1 | cytochrome BC1 synthesis | chr3:18929817-18931547 FORWARD LENGTH=576;; (*ITAG) Solyc04g080680.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62378374-62380386 transcript_region:SL2.40ch04:62378374..62380386+ go_terms:GO:0042623,GO:0005515 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 **-- PRS8_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623,GO:0005515 NbS00054972g0003.1 protein AED:0.11 eAED:0.11 QI:247|1|1|1|0.87|0.77|9|254|563; (*GB) gi|356508774|ref|XP_003523129.1| (e_value=0.0) PREDICTED: elongator complex protein 3-like [Glycine max];; (*SWP) sp|Q93ZR1|ELP3_ARATH (e_value=0.0) Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1;; (*TAIR) AT5G50320.1 (e_value=0.0) | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | chr5:20481200-20484811 REVERSE LENGTH=565;; (*ITAG) Solyc03g110910.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:55694999-55699481 transcript_region:SL2.40ch03:55694999..55699481- go_terms:GO:0008607 functional_description:"Histone acetyltransferase ELP3 family protein (AHRD V1 **-- Q22HD8_TETTH); contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3 "; GO:0008607 NbS00009226g0002.1 protein AED:0.04 eAED:0.04 QI:574|1|1|1|1|1|2|566|122; (*GB) gi|224135857|ref|XP_002327321.1| (e_value=2e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XEF0|BH051_ARATH (e_value=6e-15) Transcription factor bHLH51 OS=Arabidopsis thaliana GN=BHLH51 PE=2 SV=1;; (*TAIR) AT2G40200.1 (e_value=4e-16) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr2:16791098-16792027 FORWARD LENGTH=254;; (*ITAG) Solyc07g053290.2.1 (e_value=1e-39) genomic_reference:SL2.40ch07 gene_region:59090474-59092673 transcript_region:SL2.40ch07:59090474..59092673+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *--* B4FMK3_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00004477g0003.1 protein AED:0.24 eAED:0.24 QI:647|1|0.5|1|0.33|0.25|4|0|476; (*GB) gi|255541420|ref|XP_002511774.1| (e_value=1e-155) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q55EI6|ATX10_DICDI (e_value=1e-13) Ataxin-10 homolog OS=Dictyostelium discoideum GN=atxn10 PE=3 SV=1;; (*TAIR) AT4G00231.1 (e_value=2e-138) | Symbols: MEE50 | ARM repeat superfamily protein | chr4:97528-99050 FORWARD LENGTH=475;; (*ITAG) Solyc02g080650.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:39410137-39412177 transcript_region:SL2.40ch02:39410137..39412177+ go_terms:GO:0005488 functional_description:"Copper transport protein 86 (AHRD V1 *--- B2G4S5_ZYGRO); contains Interpro domain(s) IPR019156 Ataxin-10 domain "; GO:0005488 NbS00004781g0109.1 protein AED:0.04 eAED:0.04 QI:0|1|0|1|0|0.5|2|0|348 NbS00007467g0004.1 protein AED:0.13 eAED:0.13 QI:0|0.5|0|1|1|1|3|0|171; (*GB) gi|224134374|ref|XP_002327822.1| (e_value=4e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZU70|ATB21_ARATH (e_value=1e-43) Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1;; (*TAIR) AT2G18550.1 (e_value=8e-45) | Symbols: HB-2, ATHB21, HB21 | homeobox protein 21 | chr2:8049663-8051213 REVERSE LENGTH=220;; (*ITAG) Solyc02g085630.2.1 (e_value=4e-73) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00031419g0008.1 protein AED:0.03 eAED:0.04 QI:0|0.57|0.62|0.87|0.57|0.5|8|308|835; (*GB) gi|359492711|ref|XP_002280739.2| (e_value=2e-163) PREDICTED: uncharacterized protein LOC100254089 [Vitis vinifera];; (*SWP) sp|Q96EZ8|MCRS1_HUMAN (e_value=8e-12) Microspherule protein 1 OS=Homo sapiens GN=MCRS1 PE=1 SV=1;; (*TAIR) AT3G54350.3 (e_value=8e-67) | Symbols: emb1967 | Forkhead-associated (FHA) domain-containing protein | chr3:20122298-20126031 REVERSE LENGTH=702;; (*ITAG) Solyc07g032510.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:39239627-39259864 transcript_region:SL2.40ch07:39239627..39259864+ functional_description:"Microspherule protein 1 (AHRD V1 *-*- Q5BJR5_RAT); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00031419g0012.1 protein AED:0.19 eAED:0.19 QI:79|0.66|0.6|1|0.77|0.8|10|0|329; (*GB) gi|255543841|ref|XP_002512983.1| (e_value=4e-160) clathrin binding protein, putative [Ricinus communis];; (*TAIR) AT4G34660.2 (e_value=6e-160) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=345;; (*ITAG) Solyc07g032110.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:35135676-35139982 transcript_region:SL2.40ch07:35135676..35139982- go_terms:GO:0030276 functional_description:"Clathrin binding protein (AHRD V1 **-* B6STF7_MAIZE); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00026799g0005.1 protein AED:0.02 eAED:0.02 QI:0|0.66|0.5|1|1|1|4|0|503; (*GB) gi|78102508|sp|P68172.1|SAHH_NICSY (e_value=0.0) RecName: Full=Adenosylhomocysteinase; Short=AdoHcyase; AltName: Full=Cytokinin-binding protein CBP57; AltName: Full=S-adenosyl-L-homocysteine hydrolase;; (*SWP) sp|P68173|SAHH_TOBAC (e_value=0.0) Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1;; (*TAIR) AT4G13940.1 (e_value=0.0) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485;; (*ITAG) Solyc09g092390.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66849458-66851791 transcript_region:SL2.40ch09:66849458..66851791+ go_terms:GO:0004013 functional_description:"Adenosylhomocysteinase (AHRD V1 **** Q2XTD0_SOLTU); contains Interpro domain(s) IPR000043 S-adenosyl-L-homocysteine hydrolase "; GO:0004013 NbS00011759g0004.1 protein AED:0.12 eAED:0.17 QI:0|0|0|0.66|0.5|0.33|3|0|351; (*GB) gi|255577577|ref|XP_002529666.1| (e_value=2e-139) Protease ecfE, putative [Ricinus communis];; (*SWP) sp|P73714|Y1821_SYNY3 (e_value=1e-47) Putative zinc metalloprotease slr1821 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1821 PE=3 SV=1;; (*TAIR) AT2G32480.1 (e_value=2e-131) | Symbols: ARASP | ARABIDOPSIS SERIN PROTEASE | chr2:13788679-13790022 REVERSE LENGTH=447;; (*ITAG) Solyc07g052290.1.1 (e_value=3e-168) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58104789-58106123 transcript_region:SL2.40ch07:58104789..58106123+ go_terms:GO:0008237 functional_description:"Membrane-associated zinc metalloprotease family protein expressed (AHRD V1 ***- Q84NY6_ORYSJ); contains Interpro domain(s) IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase "; GO:0008237 NbS00005938g0003.1 protein AED:0.30 eAED:0.30 QI:0|0|0|0.5|1|1|2|0|156; (*GB) gi|224090791|ref|XP_002309083.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHS9|RBE_ARATH (e_value=1e-20) Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2;; (*TAIR) AT5G06070.1 (e_value=1e-21) | Symbols: RBE, RAB | C2H2 and C2HC zinc fingers superfamily protein | chr5:1828426-1829106 REVERSE LENGTH=226;; (*ITAG) Solyc09g011120.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4477726-4478556 transcript_region:SL2.40ch09:4477726..4478556- go_terms:GO:0005622 functional_description:"Ramosa1 C2H2 zinc-finger transcription factor (AHRD V1 *-*- D0UTY8_ZEAMM); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00005938g0007.1 protein AED:0.35 eAED:0.35 QI:9|0|0|0.57|0.33|0.42|7|0|464; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-79) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc06g065250.1.1 (e_value=9e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37076027-37077919 transcript_region:SL2.40ch06:37076027..37077919- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FFD3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00005938g0006.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|80 NbS00034342g0005.1 protein AED:0.27 eAED:0.27 QI:21|0.66|0.75|1|0.33|0.25|4|430|238; (*GB) gi|359492691|ref|XP_002281534.2| (e_value=2e-89) PREDICTED: inositol-pentakisphosphate 2-kinase-like [Vitis vinifera];; (*SWP) sp|Q93YN9|IPPK_ARATH (e_value=1e-70) Inositol-pentakisphosphate 2-kinase OS=Arabidopsis thaliana GN=IPK1 PE=1 SV=1;; (*TAIR) AT5G42810.1 (e_value=1e-71) | Symbols: ATIPK1, IPK1 | inositol-pentakisphosphate 2-kinase 1 | chr5:17167073-17169337 FORWARD LENGTH=451;; (*ITAG) Solyc04g080670.2.1 (e_value=6e-109) genomic_reference:SL2.40ch04 gene_region:62374139-62376875 transcript_region:SL2.40ch04:62374139..62376875+ go_terms:GO:0035299 functional_description:"Inositol pentakisphosphate 2-kinase (AHRD V1 **** A7X641_SOYBN); contains Interpro domain(s) IPR018009 Inositol-pentakisphosphate 2-kinase, metazoa "; GO:0035299 NbS00002296g0007.1 protein AED:0.13 eAED:0.13 QI:0|0.33|0|1|0.33|0.5|4|0|248; (*GB) gi|255567031|ref|XP_002524498.1| (e_value=7e-92) xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis];; (*SWP) sp|O48781|SPX2_ARATH (e_value=3e-77) SPX domain-containing protein 2 OS=Arabidopsis thaliana GN=SPX2 PE=2 SV=1;; (*TAIR) AT2G26660.1 (e_value=2e-78) | Symbols: ATSPX2, SPX2 | SPX domain gene 2 | chr2:11338932-11340703 FORWARD LENGTH=287;; (*ITAG) Solyc12g009480.1.1 (e_value=9e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2734835-2737711 transcript_region:SL2.40ch12:2734835..2737711- functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004331 SPX, N-terminal "; NbS00002296g0006.1 protein AED:0.33 eAED:0.38 QI:0|1|0.5|1|1|1|4|0|304; (*GB) gi|337271830|gb|AEI69673.1| (e_value=0.0) heme oxygenase 1 [Nicotiana tabacum];; (*SWP) sp|O48782|HMOX1_ARATH (e_value=6e-139) Heme oxygenase 1, chloroplastic OS=Arabidopsis thaliana GN=HO1 PE=1 SV=2;; (*TAIR) AT2G26670.1 (e_value=4e-140) | Symbols: HY1, ATHO1, HO1, TED4, GUN2, HY6 | Plant haem oxygenase (decyclizing) family protein | chr2:11341816-11343394 FORWARD LENGTH=282;; (*ITAG) Solyc12g009470.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2726504-2729459 transcript_region:SL2.40ch12:2726504..2729459- go_terms:GO:0004392 functional_description:"Heme oxygenase 1 (AHRD V1 **** Q94FW7_SOLLC); contains Interpro domain(s) IPR016951 Haem oxygenase (decyclizing), plant "; GO:0004392 NbS00007128g0004.1 protein AED:0.15 eAED:0.16 QI:124|0.25|0.2|1|0.25|0.2|5|0|326; (*GB) gi|255551442|ref|XP_002516767.1| (e_value=4e-160) Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis];; (*TAIR) AT5G38200.1 (e_value=4e-140) | Symbols: | Class I glutamine amidotransferase-like superfamily protein | chr5:15256383-15258474 FORWARD LENGTH=436;; (*ITAG) Solyc03g034320.2.1 (e_value=1e-178) genomic_reference:SL2.40ch03 gene_region:10344778-10348543 transcript_region:SL2.40ch03:10344778..10348543- go_terms:GO:0006541 functional_description:"Class I glutamine amidotransferase (AHRD V1 *-*- D4V3L4_BACVU); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00031170g0003.1 protein AED:0.26 eAED:0.26 QI:0|0|0|0.66|1|1|3|0|170; (*GB) gi|115476708|ref|NP_001061950.1| (e_value=3e-45) Os08g0451800 [Oryza sativa Japonica Group];; (*SWP) sp|D3YYI7|RN217_MOUSE (e_value=1e-13) Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus GN=Rnf217 PE=3 SV=2;; (*TAIR) AT3G14250.1 (e_value=3e-43) | Symbols: | RING/U-box superfamily protein | chr3:4745963-4746958 REVERSE LENGTH=303;; (*ITAG) Solyc06g068640.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38946544-38947245 transcript_region:SL2.40ch06:38946544..38947245- go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 **-- D7LUL3_ARALY); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00028585g0002.1 protein AED:0.46 eAED:0.80 QI:0|1|0|1|1|1|2|0|190; (*GB) gi|147771521|emb|CAN75691.1| (e_value=6e-87) hypothetical protein VITISV_038532 [Vitis vinifera];; (*SWP) sp|A1KGK6|Y775_MYCBP (e_value=1e-14) Putative S-adenosyl-L-methionine-dependent methyltransferase BCG_0775c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_0775c PE=3 SV=1;; (*TAIR) AT5G42760.1 (e_value=2e-73) | Symbols: | Leucine carboxyl methyltransferase | chr5:17148953-17150105 FORWARD LENGTH=348; NbS00040648g0001.1 protein AED:0.20 eAED:0.20 QI:0|0|0|0.5|1|1|2|0|72; (*GB) gi|3759184|dbj|BAA33810.1| (e_value=5e-37) phi-1 [Nicotiana tabacum];; (*TAIR) AT4G08950.1 (e_value=8e-35) | Symbols: EXO | Phosphate-responsive 1 family protein | chr4:5740378-5741322 FORWARD LENGTH=314;; (*ITAG) Solyc04g074450.1.1 (e_value=1e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58031412-58032356 transcript_region:SL2.40ch04:58031412..58032356- functional_description:"Phi-1 protein (Fragment) (AHRD V1 ***- Q4LAX0_CAPCH); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00018913g0004.1 protein AED:0.39 eAED:0.50 QI:0|0|0|1|0|0|5|0|213; (*GB) gi|225246|prf||1211235CE (e_value=2e-31) ORF 79;; (*SWP) sp|A0A379|YCF2_COFAR (e_value=1e-14) Protein ycf2 OS=Coffea arabica GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=7e-12) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc11g062050.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45952719-45953000 transcript_region:SL2.40ch11:45952719..45953000+ functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU)"; NbS00018913g0006.1 protein AED:0.43 eAED:0.67 QI:0|0|0|1|0|0|3|0|125; (*GB) gi|225261|prf||1211235CW (e_value=8e-33) NADH dehydrogenase 1-like ORF 207;; (*SWP) sp|P06254|NU1C_TOBAC (e_value=5e-32) NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3;; (*ITAG) ATCG01100.1 (e_value=8e-22) | Symbols: NDHA | NADH dehydrogenase family protein | chrC:119847-122009 REVERSE LENGTH=360;; (*ITAG) Solyc02g011800.1.1 (e_value=9e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:4985089-4985561 transcript_region:SL2.40ch02:4985089..4985561- go_terms:GO:0016020 functional_description:"NAD(P)H-quinone oxidoreductase subunit 1 (AHRD V1 ***- D3WEI6_LIQST); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00018913g0007.1 protein AED:0.44 eAED:0.59 QI:0|0|0|1|0|0|3|0|112; (*GB) gi|156573685|gb|ABU85175.1| (e_value=6e-32) hypothetical protein RF2 [Anethum graveolens];; (*SWP) sp|Q33BV3|YCF2_NICTO (e_value=8e-33) Protein ycf2 OS=Nicotiana tomentosiformis GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=2e-26) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc01g007640.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:1883398-1890719 transcript_region:SL2.40ch01:1883398..1890719+ go_terms:GO:0005524,GO:0017111,GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0005524,GO:0017111,GO:0009507 NbS00018913g0005.1 protein AED:0.44 eAED:0.44 QI:0|0|0|1|0|0|2|0|111; (*GB) gi|351653946|ref|YP_004891672.1| (e_value=1e-59) ndhH gene product (chloroplast) [Nicotiana undulata];; (*SWP) sp|Q8S8U4|NDHH_ATRBE (e_value=4e-61) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Atropa belladonna GN=ndhH PE=3 SV=1;; (*ITAG) ATCG01110.1 (e_value=2e-55) | Symbols: NDHH | NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393;; (*ITAG) Solyc10g047400.1.1 (e_value=2e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:36268877-36269514 transcript_region:SL2.40ch10:36268877..36269514+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- D5RRQ2_9PROT); contains Interpro domain(s) IPR001135 NADH-quinone oxidoreductase, subunit D "; GO:0055114 NbS00018913g0115.1 protein AED:0.10 eAED:0.11 QI:0|0.5|0.33|1|0.5|0.66|3|0|440 NbS00018913g0117.1 protein AED:0.37 eAED:0.42 QI:0|0|0|1|0|0|2|0|101 NbS00018913g0116.1 protein AED:0.44 eAED:0.56 QI:0|0|0|1|0|0|2|0|68 NbS00000572g0002.1 protein AED:0.20 eAED:0.20 QI:0|-1|0|1|-1|1|1|0|258; (*GB) gi|225458257|ref|XP_002281331.1| (e_value=2e-134) PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q940Z1|PPR51_ARATH (e_value=3e-98) Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2;; (*TAIR) AT1G19520.1 (e_value=2e-94) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025200.1.1 (e_value=3e-154) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26687693-26688625 transcript_region:SL2.40ch07:26687693..26688625- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KP55_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000572g0001.1 protein AED:0.26 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|139; (*GB) gi|225458257|ref|XP_002281331.1| (e_value=1e-42) PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q8LEZ4|NFD5_ARATH (e_value=4e-29) Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1;; (*TAIR) AT1G19520.1 (e_value=1e-29) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025210.1.1 (e_value=3e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26689621-26690748 transcript_region:SL2.40ch07:26689621..26690748- functional_description:"Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial (AHRD V1 ***- NFD5_ARATH)"; NbS00036690g0005.1 protein AED:0.08 eAED:0.25 QI:0|0.4|0.5|0.83|0.2|0.5|6|0|143; (*GB) gi|217071656|gb|ACJ84188.1| (e_value=9e-45) unknown [Medicago truncatula];; (*TAIR) AT2G33735.1 (e_value=2e-32) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr2:14268532-14269394 REVERSE LENGTH=119;; (*ITAG) Solyc04g076080.2.1 (e_value=6e-61) genomic_reference:SL2.40ch04 gene_region:58628004-58631852 transcript_region:SL2.40ch04:58628004..58631852- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6UF39_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0006457,GO:0031072 NbS00036690g0002.1 protein AED:0.12 eAED:0.12 QI:226|1|0.5|1|0|0|2|0|512; (*GB) gi|359492929|ref|XP_002283907.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g18475-like [Vitis vinifera];; (*SWP) sp|Q3E9F0|PP392_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1;; (*TAIR) AT5G18475.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:6129255-6130775 REVERSE LENGTH=506;; (*ITAG) Solyc04g076070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58626133-58627668 transcript_region:SL2.40ch04:58626133..58627668+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LXV6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008111g0001.1 protein AED:0.20 eAED:0.39 QI:73|1|0.5|1|0|0.5|2|0|377; (*ITAG) Solyc01g109730.1.1 (e_value=2e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00008111g0008.1 protein AED:0.20 eAED:0.20 QI:0|0|0|1|0|0|2|0|136; (*GB) gi|133907801|gb|ABO42360.1| (e_value=6e-42) ribosomal protein S3 [Brexia madagascariensis];; (*SWP) sp|Q04716|RT03_PETHY (e_value=3e-41) Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1;; (*ITAG) ATMG00090.1 (e_value=3e-36) | Symbols: | structural constituent of ribosome;protein binding | chrM:25482-28733 REVERSE LENGTH=556;; (*ITAG) Solyc05g045830.1.1 (e_value=9e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:56746264-56748317 transcript_region:SL2.40ch05:56746264..56748317+ go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- D3GFC1_9ROSI); contains Interpro domain(s) IPR008282 Ribosomal protein S3, N-terminal "; GO:0005840 NbS00007721g0005.1 protein AED:0.13 eAED:0.13 QI:0|0|0|0.8|0.75|0.8|5|0|484; (*GB) gi|255581003|ref|XP_002531319.1| (e_value=1e-108) Peroxidase 2 precursor, putative [Ricinus communis];; (*SWP) sp|A7NY33|PER4_VITVI (e_value=2e-79) Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1;; (*TAIR) AT5G05340.1 (e_value=5e-76) | Symbols: | Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324;; (*ITAG) Solyc10g076210.1.1 (e_value=1e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58379010-58380144 transcript_region:SL2.40ch10:58379010..58380144- go_terms:GO:0005515 functional_description:"Peroxidase 1 (AHRD V1 ***- A0SWU6_SESRO); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0005515 NbS00034626g0003.1 protein AED:0.10 eAED:0.10 QI:0|0.87|0.77|1|0.87|0.77|9|191|333; (*GB) gi|359479028|ref|XP_002284705.2| (e_value=1e-157) PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LCU7|MECR_ARATH (e_value=1e-146) Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1;; (*TAIR) AT3G45770.1 (e_value=1e-147) | Symbols: | Polyketide synthase, enoylreductase family protein | chr3:16805753-16807774 REVERSE LENGTH=375;; (*ITAG) Solyc11g072650.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52957116-52960112 transcript_region:SL2.40ch11:52957116..52960112- go_terms:GO:0005524 functional_description:"Trans-2-enoyl CoA reductase (AHRD V1 **-- C5MRG3_9ROSI); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005524 NbS00021560g0004.1 protein AED:0.10 eAED:0.10 QI:152|0.87|1|1|0.25|0.44|9|170|419; (*GB) gi|255574954|ref|XP_002528383.1| (e_value=2e-168) set domain protein, putative [Ricinus communis];; (*SWP) sp|Q949T8|ASHR3_ARATH (e_value=3e-150) Histone-lysine N-methyltransferase ASHR3 OS=Arabidopsis thaliana GN=ASHR3 PE=1 SV=1;; (*TAIR) AT4G30860.1 (e_value=2e-151) | Symbols: ASHR3, SDG4 | SET domain group 4 | chr4:15024546-15027427 FORWARD LENGTH=497;; (*ITAG) Solyc07g006060.2.1 (e_value=9e-161) genomic_reference:SL2.40ch07 gene_region:902620-910635 transcript_region:SL2.40ch07:902620..910635+ go_terms:GO:0046974 functional_description:"Histone-lysine N-methyltransferase, H3 lysine-36 specific (AHRD V1 **** SET2_CANAL); contains Interpro domain(s) IPR001214 SET "; GO:0046974 NbS00054073g0003.1 protein AED:0.06 eAED:0.06 QI:0|0|0|0.5|0|0|2|0|127; (*GB) gi|18654477|gb|AAL35363.2|AF442385_1 (e_value=4e-53) thioredoxin peroxidase [Capsicum annuum];; (*SWP) sp|Q9FR35|PRX2C_ORYSJ (e_value=4e-48) Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1;; (*TAIR) AT1G65980.1 (e_value=9e-48) | Symbols: TPX1 | thioredoxin-dependent peroxidase 1 | chr1:24559524-24560753 REVERSE LENGTH=162;; (*ITAG) Solyc07g020860.2.1 (e_value=5e-54) genomic_reference:SL2.40ch07 gene_region:14295272-14300912 transcript_region:SL2.40ch07:14295272..14300912+ go_terms:GO:0008379 functional_description:"Peroxiredoxin (AHRD V1 **-- D2D300_GOSHI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0008379 NbS00034111g0005.1 protein AED:0.25 eAED:0.25 QI:420|0.9|0.72|1|0.6|0.72|11|1681|176; (*GB) gi|225431914|ref|XP_002276853.1| (e_value=2e-81) PREDICTED: dihydrolipoyl dehydrogenase [Vitis vinifera];; (*SWP) sp|P72740|DLDH_SYNY3 (e_value=9e-45) Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lpdA PE=1 SV=3;; (*TAIR) AT3G16950.1 (e_value=4e-79) | Symbols: LPD1, ptlpd1 | lipoamide dehydrogenase 1 | chr3:5786761-5790383 REVERSE LENGTH=570;; (*ITAG) Solyc05g053100.2.1 (e_value=2e-89) genomic_reference:SL2.40ch05 gene_region:62363265-62370881 transcript_region:SL2.40ch05:62363265..62370881+ go_terms:GO:0003916 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- B9RZN2_RICCO); contains Interpro domain(s) IPR006258 Dihydrolipoamide dehydrogenase "; GO:0003916 NbS00034111g0007.1 protein AED:0.00 eAED:0.00 QI:63|1|1|1|0.5|0.33|3|187|61; (*GB) gi|225431910|ref|XP_002276776.1| (e_value=2e-29) PREDICTED: 60S ribosomal protein L29-1 [Vitis vinifera];; (*SWP) sp|Q9M7X7|RL291_ARATH (e_value=3e-27) 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1;; (*TAIR) AT3G06680.1 (e_value=1e-28) | Symbols: | Ribosomal L29e protein family | chr3:2114402-2114877 REVERSE LENGTH=83;; (*ITAG) Solyc05g053440.2.1 (e_value=7e-32) genomic_reference:SL2.40ch05 gene_region:62664607-62665774 transcript_region:SL2.40ch05:62664607..62665774+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L29 (AHRD V1 ***- B6SPH4_MAIZE); contains Interpro domain(s) IPR002673 Ribosomal protein L29e "; GO:0003735 NbC24552726g0002.1 protein AED:0.00 eAED:0.00 QI:39|1|1|1|1|1|2|61|79 NbS00007937g0004.1 protein AED:0.42 eAED:0.46 QI:50|0|0.33|0.66|1|1|3|215|54 NbS00039076g0007.1 protein AED:0.05 eAED:0.20 QI:332|0.5|0.66|1|0.5|0.33|3|434|461; (*GB) gi|225463522|ref|XP_002265097.1| (e_value=7e-71) PREDICTED: WPP domain-interacting protein 2-like [Vitis vinifera];; (*SWP) sp|Q9FH18|WIP2_ARATH (e_value=2e-25) WPP domain-interacting protein 2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1;; (*TAIR) AT5G56210.1 (e_value=1e-26) | Symbols: WIP2 | WPP domain interacting protein 2 | chr5:22750660-22752363 REVERSE LENGTH=509;; (*ITAG) Solyc07g066170.2.1 (e_value=2e-83) genomic_reference:SL2.40ch07 gene_region:64876218-64880395 transcript_region:SL2.40ch07:64876218..64880395- functional_description:"WPP domain-interacting protein 1 (AHRD V1 ***- WIP1_ARATH)"; NbS00024681g0007.1 protein AED:0.26 eAED:0.26 QI:435|0.8|0.66|1|0.2|0.16|6|0|444; (*GB) gi|224146378|ref|XP_002325986.1| (e_value=5e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0VD51|RNF13_BOVIN (e_value=1e-25) E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1;; (*TAIR) AT1G71980.1 (e_value=7e-150) | Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448;; (*ITAG) Solyc11g019930.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:9789425-9802526 transcript_region:SL2.40ch11:9789425..9802526- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *-*- B5X4J4_SALSA); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0008270 NbS00007680g0011.1 protein AED:0.15 eAED:0.15 QI:272|0.66|0.71|0.85|0.33|0.14|7|454|253; (*GB) gi|359486460|ref|XP_002275157.2| (e_value=3e-81) PREDICTED: reticulon-like protein B16-like [Vitis vinifera];; (*SWP) sp|Q8GYH6|RTNLP_ARATH (e_value=1e-72) Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1;; (*TAIR) AT3G10915.2 (e_value=1e-73) | Symbols: | Reticulon family protein | chr3:3416101-3417497 REVERSE LENGTH=226;; (*ITAG) Solyc06g049060.2.1 (e_value=7e-101) genomic_reference:SL2.40ch06 gene_region:28826494-28832938 transcript_region:SL2.40ch06:28826494..28832938- go_terms:GO:0005783 functional_description:"Reticulon (AHRD V1 ***- B6TG01_MAIZE); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00007680g0013.1 protein AED:0.13 eAED:0.13 QI:142|1|1|1|1|1|3|1037|253; (*GB) gi|4027899|gb|AAC96081.1| (e_value=1e-145) alpha-expansin precursor [Nicotiana tabacum];; (*SWP) sp|Q0DHB7|EXPA4_ORYSJ (e_value=4e-119) Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1;; (*TAIR) AT2G40610.1 (e_value=1e-118) | Symbols: ATEXPA8, EXP8, ATEXP8, ATHEXP ALPHA 1.11, EXPA8 | expansin A8 | chr2:16949121-16950472 REVERSE LENGTH=253;; (*ITAG) Solyc06g049050.2.1 (e_value=4e-139) genomic_reference:SL2.40ch06 gene_region:28822198-28823964 transcript_region:SL2.40ch06:28822198..28823964+ go_terms:GO:0005576,GO:0009664 functional_description:"Expansin (AHRD V1 ***- O82625_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576,GO:0009664 NbS00007680g0012.1 protein AED:0.22 eAED:0.22 QI:0|1|0.85|1|0.83|0.71|7|0|351; (*GB) gi|225448689|ref|XP_002280469.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At1g06890 [Vitis vinifera];; (*SWP) sp|Q8RXL8|Y1689_ARATH (e_value=3e-178) Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1;; (*TAIR) AT1G06890.2 (e_value=2e-179) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr1:2111728-2114038 REVERSE LENGTH=357;; (*ITAG) Solyc06g049070.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:28838199-28842033 transcript_region:SL2.40ch06:28838199..28842033+ go_terms:GO:0008514 functional_description:"Solute carrier family 35 member E3 (AHRD V1 **-- S35E3_DANRE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00007680g0014.1 protein AED:0.32 eAED:0.33 QI:0|1|0.5|1|1|1|4|0|288; (*GB) gi|225448679|ref|XP_002280180.1| (e_value=8e-94) PREDICTED: transcription factor RF2b [Vitis vinifera];; (*SWP) sp|Q6S4P4|RF2B_ORYSJ (e_value=6e-78) Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1;; (*TAIR) AT1G06850.1 (e_value=4e-76) | Symbols: AtbZIP52, bZIP52 | basic leucine-zipper 52 | chr1:2105233-2106518 FORWARD LENGTH=337;; (*ITAG) Solyc06g049040.2.1 (e_value=1e-105) genomic_reference:SL2.40ch06 gene_region:28806155-28810096 transcript_region:SL2.40ch06:28806155..28810096+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LF63_ARALY); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00023666g0013.1 protein AED:0.15 eAED:0.16 QI:0|0.85|0.8|1|0.85|0.8|15|274|788; (*GB) gi|225451860|ref|XP_002278556.1| (e_value=0.0) PREDICTED: kanadaptin-like [Vitis vinifera];; (*SWP) sp|Q9BWU0|NADAP_HUMAN (e_value=5e-36) Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1;; (*TAIR) AT5G38840.1 (e_value=0.0) | Symbols: | SMAD/FHA domain-containing protein | chr5:15551329-15554846 FORWARD LENGTH=735;; (*ITAG) Solyc02g089360.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45779148-45786379 transcript_region:SL2.40ch02:45779148..45786379- functional_description:"Nuclear inhibitor of protein phosphatase 1 (AHRD V1 *--- Q9V7W9_DROME); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00023666g0010.1 protein AED:0.25 eAED:0.25 QI:0|0|0.33|1|0.5|0.33|3|340|211; (*GB) gi|47900693|gb|AAT39292.1| (e_value=1e-23) Putative F-box domain containing protein, identical [Solanum demissum];; (*TAIR) AT3G23880.1 (e_value=1e-11) | Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364;; (*ITAG) Solyc09g083230.1.1 (e_value=3e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64287968-64289113 transcript_region:SL2.40ch09:64287968..64289113+ functional_description:"F-box family protein (AHRD V1 ***- D7L456_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023666g0008.1 protein AED:0.28 eAED:0.29 QI:0|0.84|0.75|1|0.94|0.95|20|0|949; (*GB) gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY (e_value=0.0) RecName: Full=DNA-directed RNA polymerase 2, chloroplastic/mitochondrial; AltName: Full=NsRpoT-B; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 2; Flags: Precursor;; (*SWP) sp|Q8VWF8|RPOT2_NICSY (e_value=0.0) DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2;; (*TAIR) AT5G15700.1 (e_value=0.0) | Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115793-5121609 REVERSE LENGTH=1011;; (*ITAG) Solyc05g010660.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4868186-4882265 transcript_region:SL2.40ch05:4868186..4882265- go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9HIV5_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00016993g0005.1 protein AED:0.30 eAED:0.30 QI:28|1|1|1|0.8|0.83|6|162|284; (*GB) gi|255543387|ref|XP_002512756.1| (e_value=3e-99) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q94AN4|AP2L1_ARATH (e_value=1e-78) AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1;; (*TAIR) AT1G16060.2 (e_value=2e-81) | Symbols: ADAP | ARIA-interacting double AP2 domain protein | chr1:5509083-5511609 FORWARD LENGTH=275;; (*ITAG) Solyc03g117720.2.1 (e_value=3e-107) genomic_reference:SL2.40ch03 gene_region:60828177-60832436 transcript_region:SL2.40ch03:60828177..60832436+ go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 ***- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00016993g0008.1 protein AED:0.06 eAED:0.08 QI:20|1|0.75|1|1|0.75|4|0|372; (*GB) gi|298204764|emb|CBI25262.3| (e_value=2e-176) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G79710.1 (e_value=2e-148) | Symbols: | Major facilitator superfamily protein | chr1:29995137-29996988 FORWARD LENGTH=497;; (*ITAG) Solyc06g068560.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38881870-38886874 transcript_region:SL2.40ch06:38881870..38886874- go_terms:GO:0005215 functional_description:"Folate/biopterin transporter (AHRD V1 **** B5W6N2_SPIMA); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; GO:0005215 NbS00040703g0004.1 protein AED:0.40 eAED:0.40 QI:0|1|0.66|1|1|1|3|394|147; (*ITAG) Solyc03g097080.2.1 (e_value=1e-26) genomic_reference:SL2.40ch03 gene_region:52874752-52878842 transcript_region:SL2.40ch03:52874752..52878842+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006525 Cystatin-related, plant "; NbS00033888g0006.1 protein AED:0.07 eAED:0.18 QI:18|1|0.5|1|1|1|2|0|381; (*GB) gi|224066243|ref|XP_002302043.1| (e_value=2e-100) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L4E7|BP73_ORYSJ (e_value=9e-42) SAP-like protein BP-73 OS=Oryza sativa subsp. japonica GN=BP-73 PE=1 SV=1;; (*TAIR) AT1G06190.2 (e_value=4e-41) | Symbols: | Rho termination factor | chr1:1892589-1894078 REVERSE LENGTH=292;; (*ITAG) Solyc09g025260.2.1 (e_value=1e-175) genomic_reference:SL2.40ch09 gene_region:19280157-19283283 transcript_region:SL2.40ch09:19280157..19283283+ go_terms:GO:0016020,GO:0006353 functional_description:"SAP-like protein BP-73 (AHRD V1 ***- B6SRI7_MAIZE); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020,GO:0006353 NbS00033888g0001.1 protein AED:0.33 eAED:0.33 QI:435|0.66|0.75|1|1|1|4|435|93; (*GB) gi|330318674|gb|AEC10997.1| (e_value=3e-52) hypothetical protein [Camellia sinensis];; (*TAIR) AT1G06200.1 (e_value=3e-49) | Symbols: | Peptidase S24/S26A/S26B/S26C family protein | chr1:1894604-1896852 REVERSE LENGTH=206;; (*ITAG) Solyc09g025250.2.1 (e_value=7e-57) genomic_reference:SL2.40ch09 gene_region:19271334-19278850 transcript_region:SL2.40ch09:19271334..19278850+ functional_description:"Mitochondrial inner membrane protease subunit 2 (AHRD V1 *--- IMP2L_HUMAN); contains Interpro domain(s) IPR015927 Peptidase S24, S26A, S26B and S26C "; NbS00003781g0017.1 protein AED:0.19 eAED:0.19 QI:31|1|0.5|1|1|1|2|0|241; (*GB) gi|255560920|ref|XP_002521473.1| (e_value=7e-63) ubiquitin-protein ligase, putative [Ricinus communis];; (*TAIR) AT5G14510.1 (e_value=5e-49) | Symbols: | ARM repeat superfamily protein | chr5:4678125-4679194 REVERSE LENGTH=327;; (*ITAG) Solyc02g067850.2.1 (e_value=3e-114) genomic_reference:SL2.40ch02 gene_region:32531978-32533497 transcript_region:SL2.40ch02:32531978..32533497- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7M6K3_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00003781g0005.1 protein AED:0.23 eAED:0.26 QI:593|1|0.66|1|0.5|0.66|3|389|199; (*GB) gi|255560908|ref|XP_002521467.1| (e_value=5e-61) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G19130.1 (e_value=5e-54) | Symbols: | GPI transamidase component family protein / Gaa1-like family protein | chr5:6416128-6418993 REVERSE LENGTH=699;; (*ITAG) Solyc02g067820.2.1 (e_value=2e-70) genomic_reference:SL2.40ch02 gene_region:32512237-32517042 transcript_region:SL2.40ch02:32512237..32517042- go_terms:GO:0003923 functional_description:"GPI transamidase component GAA1 (AHRD V1 *--* C9SRB1_VERA1); contains Interpro domain(s) IPR017063 Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component "; GO:0003923 NbS00003781g0006.1 protein AED:0.46 eAED:0.54 QI:0|0|0|0.5|1|1|2|0|158; (*GB) gi|224060139|ref|XP_002300056.1| (e_value=7e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19130.1 (e_value=2e-16) | Symbols: | GPI transamidase component family protein / Gaa1-like family protein | chr5:6416128-6418993 REVERSE LENGTH=699;; (*ITAG) Solyc02g067820.2.1 (e_value=5e-55) genomic_reference:SL2.40ch02 gene_region:32512237-32517042 transcript_region:SL2.40ch02:32512237..32517042- go_terms:GO:0003923 functional_description:"GPI transamidase component GAA1 (AHRD V1 *--* C9SRB1_VERA1); contains Interpro domain(s) IPR017063 Glycosylphosphatidylinositol:protein transamidase complex, GAA1 component "; GO:0003923 NbS00003781g0002.1 protein AED:0.02 eAED:0.02 QI:473|1|1|1|0.5|0.66|3|157|656; (*GB) gi|1200256|emb|CAA62476.1| (e_value=0.0) stpk1 protein kinase [Solanum tuberosum];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=0.0) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT5G47750.1 (e_value=0.0) | Symbols: D6PKL2, PK5 | D6 protein kinase like 2 | chr5:19339947-19341864 REVERSE LENGTH=586;; (*ITAG) Solyc02g067830.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:32524155-32527283 transcript_region:SL2.40ch02:32524155..32527283+ go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00003781g0014.1 protein AED:0.32 eAED:0.36 QI:0|0|0|1|1|1|2|0|97; (*GB) gi|225452346|ref|XP_002274411.1| (e_value=5e-35) PREDICTED: uncharacterized protein LOC100268049 [Vitis vinifera];; (*TAIR) AT5G40460.1 (e_value=6e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202465-16202803 FORWARD LENGTH=112;; (*ITAG) Solyc02g067810.1.1 (e_value=5e-45) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:32502384-32502698 transcript_region:SL2.40ch02:32502384..32502698+ functional_description:"Genomic DNA chromosome 5 TAC clone K21I16 (AHRD V1 ***- Q9FI64_ARATH)"; NbS00003781g0020.1 protein AED:0.28 eAED:0.48 QI:220|0.8|0.83|1|0.4|0.33|6|569|145; (*GB) gi|707001|gb|AAB33256.1| (e_value=6e-50) Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum];; (*TAIR) AT3G27570.1 (e_value=2e-35) | Symbols: | Sucrase/ferredoxin-like family protein | chr3:10214276-10216681 REVERSE LENGTH=379;; (*ITAG) Solyc02g067840.2.1 (e_value=1e-71) genomic_reference:SL2.40ch02 gene_region:32527853-32531873 transcript_region:SL2.40ch02:32527853..32531873+ functional_description:"Sucrase/ferredoxin domain protein (AHRD V1 *--- A1CK27_ASPCL); contains Interpro domain(s) IPR009737 Sucraseferredoxin-like "; NbS00003781g0018.1 protein AED:0.65 eAED:0.66 QI:0|0|0|0.5|0|0|2|0|73 NbS00046561g0004.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|225459886|ref|XP_002263453.1| (e_value=6e-36) PREDICTED: probable purine permease 4-like [Vitis vinifera];; (*SWP) sp|Q9SY29|PUP4_ARATH (e_value=1e-23) Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1;; (*TAIR) AT1G30840.2 (e_value=8e-25) | Symbols: PUP4 | purine permease 4 | chr1:10974581-10975729 FORWARD LENGTH=382;; (*ITAG) Solyc10g005160.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:133858-134931 transcript_region:SL2.40ch10:133858..134931- go_terms:GO:0005345 functional_description:"Purine permease (AHRD V1 **-* B6TET5_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00046561g0003.1 protein AED:0.40 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|87; (*GB) gi|255586742|ref|XP_002533991.1| (e_value=3e-40) purine transporter, putative [Ricinus communis];; (*SWP) sp|Q9SY29|PUP4_ARATH (e_value=1e-28) Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1;; (*TAIR) AT1G30840.2 (e_value=1e-29) | Symbols: PUP4 | purine permease 4 | chr1:10974581-10975729 FORWARD LENGTH=382;; (*ITAG) Solyc10g005160.1.1 (e_value=5e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:133858-134931 transcript_region:SL2.40ch10:133858..134931- go_terms:GO:0005345 functional_description:"Purine permease (AHRD V1 **-* B6TET5_MAIZE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00001942g0006.1 protein AED:0.00 eAED:0.00 QI:75|1|1|1|1|1|2|198|151; (*GB) gi|351725389|ref|NP_001235555.1| (e_value=1e-63) uncharacterized protein LOC100305705 [Glycine max];; (*SWP) sp|Q6L500|H2A4_ORYSJ (e_value=8e-60) Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1;; (*TAIR) AT5G02560.1 (e_value=9e-60) | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153;; (*ITAG) Solyc11g073250.1.1 (e_value=1e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53355429-53355963 transcript_region:SL2.40ch11:53355429..53355963- go_terms:GO:0003684 functional_description:"Histone H2A (AHRD V1 ***- C6TMV8_SOYBN); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0003684 NbS00001942g0010.1 protein AED:0.02 eAED:0.02 QI:1137|1|1|1|0.37|0.33|9|8|194; (*GB) gi|359811337|ref|NP_001241486.1| (e_value=2e-39) uncharacterized protein LOC100784099 [Glycine max];; (*SWP) sp|Q5ZMS3|IF2G_CHICK (e_value=3e-26) Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1;; (*TAIR) AT1G04170.1 (e_value=2e-39) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc05g054310.2.1 (e_value=2e-41) genomic_reference:SL2.40ch05 gene_region:63392299-63395734 transcript_region:SL2.40ch05:63392299..63395734+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00061432g0005.1 protein AED:0.12 eAED:0.12 QI:165|1|1|1|0.8|0.83|6|258|270; (*GB) gi|255543222|ref|XP_002512674.1| (e_value=9e-127) aspartate semialdehyde dehydrogenase, putative [Ricinus communis];; (*SWP) sp|Q55CU8|RSC5_DICDI (e_value=1e-20) Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1;; (*TAIR) AT1G01630.1 (e_value=6e-123) | Symbols: | Sec14p-like phosphatidylinositol transfer family protein | chr1:229206-230675 FORWARD LENGTH=255;; (*ITAG) Solyc03g118150.2.1 (e_value=4e-115) genomic_reference:SL2.40ch03 gene_region:61156088-61158567 transcript_region:SL2.40ch03:61156088..61158567+ go_terms:GO:0008526 functional_description:"Sec14-like (Fragment) (AHRD V1 **-- Q6R655_MELLI); contains Interpro domain(s) IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal "; GO:0008526 NbS00061432g0006.1 protein AED:0.23 eAED:0.23 QI:145|1|1|1|1|1|2|388|272; (*GB) gi|1717950|sp|P51132.1|UCRI2_TOBAC (e_value=0.0) RecName: Full=Cytochrome b-c1 complex subunit Rieske-2, mitochondrial; AltName: Full=Complex III subunit 5-2; AltName: Full=Rieske iron-sulfur protein 2; Short=RISP2; AltName: Full=Ubiquinol-cytochrome c reductase iron-sulfur subunit 2; Flags: Precursor;; (*SWP) sp|P51132|UCRI2_TOBAC (e_value=0.0) Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G13430.1 (e_value=1e-140) | Symbols: | Ubiquinol-cytochrome C reductase iron-sulfur subunit | chr5:4305414-4307399 REVERSE LENGTH=272;; (*ITAG) Solyc11g039840.1.1 (e_value=1e-152) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:26506797-26509759 transcript_region:SL2.40ch11:26506797..26509759+ go_terms:GO:0008121,GO:0046872 functional_description:"Ubiquinol-cytochrome c reductase iron-sulfur subunit (AHRD V1 **** Q38M54_SOLTU); contains Interpro domain(s) IPR005805 Rieske iron-sulphur protein, C-terminal "; GO:0008121,GO:0046872 NbS00023500g0006.1 protein AED:0.24 eAED:0.34 QI:0|0|0|0.66|0|0.16|6|0|350; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-41) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00023500g0007.1 protein AED:0.15 eAED:0.15 QI:0|0.25|0.4|1|0.25|0.6|5|286|611; (*GB) gi|255549776|ref|XP_002515939.1| (e_value=1e-132) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=4e-53) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT1G52080.1 (e_value=1e-83) | Symbols: AR791 | actin binding protein family | chr1:19369788-19371862 FORWARD LENGTH=573;; (*ITAG) Solyc06g062400.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:35755674-35758392 transcript_region:SL2.40ch06:35755674..35758392+ go_terms:GO:0003779 functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; GO:0003779 NbS00008117g0003.1 protein AED:0.06 eAED:0.08 QI:252|0.88|0.9|1|0.88|0.9|10|185|394; (*GB) gi|551257|emb|CAA57446.1| (e_value=0.0) alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|P25141|ADH1_PETHY (e_value=0.0) Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1;; (*TAIR) AT1G77120.1 (e_value=0.0) | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379;; (*ITAG) Solyc04g064710.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:54976858-54979891 transcript_region:SL2.40ch04:54976858..54979891+ go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase 2 (AHRD V1 **** Q9FZ01_VITVI); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00041630g0009.1 protein AED:0.10 eAED:0.13 QI:0|0.5|0|1|0.5|0.66|3|0|522; (*GB) gi|255544572|ref|XP_002513347.1| (e_value=0.0) (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis];; (*SWP) sp|O64899|C80B1_ESCCA (e_value=2e-141) (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1;; (*TAIR) AT2G45570.1 (e_value=5e-123) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc03g026140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7927193-7928936 transcript_region:SL2.40ch03:7927193..7928936- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00041630g0008.1 protein AED:0.17 eAED:0.17 QI:116|0.83|0.71|1|0.83|0.85|7|167|684; (*GB) gi|359490397|ref|XP_002279420.2| (e_value=0.0) PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera];; (*SWP) sp|Q9ZPH9|PMTF_ARATH (e_value=0.0) Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1;; (*TAIR) AT4G00750.1 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:314405-317507 FORWARD LENGTH=633;; (*ITAG) Solyc03g026120.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7910298-7913304 transcript_region:SL2.40ch03:7910298..7913304- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7M5L0_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00049670g0005.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|251; (*ITAG) Solyc03g083830.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47273515-47274030 transcript_region:SL2.40ch03:47273515..47274030- functional_description:"Unknown Protein (AHRD V1)"; NbS00049670g0001.1 protein AED:0.19 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|266; (*GB) gi|225456656|ref|XP_002267041.1| (e_value=6e-98) PREDICTED: momilactone A synthase [Vitis vinifera];; (*SWP) sp|Q7FAE1|MOMAS_ORYSJ (e_value=3e-48) Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1;; (*TAIR) AT2G47140.1 (e_value=2e-75) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:19350970-19352059 REVERSE LENGTH=257;; (*ITAG) Solyc03g113460.1.1 (e_value=3e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57655307-57656107 transcript_region:SL2.40ch03:57655307..57656107+ go_terms:GO:0005507 functional_description:"Alcohol dehydrogenase (Fragment) (AHRD V1 ***- Q6R4Y6_ZEALU); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0005507 NbS00049670g0007.1 protein AED:0.18 eAED:0.19 QI:284|0.7|0.81|1|1|1|11|0|788; (*GB) gi|147826449|emb|CAN66563.1| (e_value=0.0) hypothetical protein VITISV_024931 [Vitis vinifera];; (*SWP) sp|C0LGL9|FEI2_ARATH (e_value=1e-151) LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1;; (*TAIR) AT5G62710.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25187438-25190325 FORWARD LENGTH=604;; (*ITAG) Solyc03g113450.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57645268-57650030 transcript_region:SL2.40ch03:57645268..57650030+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007397g0001.1 protein AED:0.28 eAED:0.38 QI:0|0|0|1|1|1|2|0|143; (*GB) gi|33337497|gb|AAQ13406.1|AF005265_1 (e_value=1e-24) importin [Oryza sativa];; (*SWP) sp|Q71VM4|IMA1A_ORYSJ (e_value=3e-26) Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2;; (*TAIR) AT1G09270.3 (e_value=8e-25) | Symbols: IMPA-4 | importin alpha isoform 4 | chr1:2995162-2997833 FORWARD LENGTH=456;; (*ITAG) Solyc08g041890.2.1 (e_value=4e-28) genomic_reference:SL2.40ch08 gene_region:27675944-27681910 transcript_region:SL2.40ch08:27675944..27681910- go_terms:GO:0008320 functional_description:"Importin alpha-1b subunit (AHRD V1 ***- B6T451_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00007397g0011.1 protein AED:0.82 eAED:0.82 QI:0|0|0|0.5|1|1|2|0|185; (*GB) gi|255541526|ref|XP_002511827.1| (e_value=1e-43) Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis];; (*SWP) sp|Q9ZTZ7|KEA1_ARATH (e_value=5e-45) K(+) efflux antiporter 1, chloroplastic OS=Arabidopsis thaliana GN=KEA1 PE=1 SV=2;; (*TAIR) AT1G01790.1 (e_value=4e-46) | Symbols: KEA1, ATKEA1 | K+ efflux antiporter 1 | chr1:284781-290869 FORWARD LENGTH=1193;; (*ITAG) Solyc01g094290.2.1 (e_value=3e-46) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00007397g0022.1 protein AED:0.05 eAED:0.06 QI:0|0|0.5|1|0|1|2|606|127; (*GB) gi|195608638|gb|ACG26149.1| (e_value=3e-47) UV-induced protein uvi31 [Zea mays];; (*SWP) sp|Q84W65|SUFE_ARATH (e_value=3e-32) SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2;; (*TAIR) AT1G55805.1 (e_value=2e-36) | Symbols: | BolA-like family protein | chr1:20858956-20859438 REVERSE LENGTH=160;; (*ITAG) Solyc09g090830.2.1 (e_value=1e-58) genomic_reference:SL2.40ch09 gene_region:65586858-65589544 transcript_region:SL2.40ch09:65586858..65589544+ functional_description:"BolA-like protein expressed (AHRD V1 *-*- Q10PW0_ORYSJ); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00007397g0021.1 protein AED:0.23 eAED:0.37 QI:0|0|0|0.66|0.4|0.5|6|0|372; (*ITAG) Solyc01g094420.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00009916g0001.1 protein AED:0.33 eAED:0.36 QI:75|-1|0|1|-1|1|1|0|64 NbS00030900g0008.1 protein AED:0.29 eAED:0.29 QI:0|0.75|0.77|1|0.37|0.44|9|0|251; (*GB) gi|296082088|emb|CBI21093.3| (e_value=2e-98) unnamed protein product [Vitis vinifera];; (*SWP) sp|B7FA90|HPT1_ORYSJ (e_value=1e-79) Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1;; (*TAIR) AT2G18950.1 (e_value=4e-79) | Symbols: HPT1, TPT1, ATHPT, VTE2 | homogentisate phytyltransferase 1 | chr2:8207491-8210047 FORWARD LENGTH=393;; (*ITAG) Solyc08g041850.2.1 (e_value=3e-121) genomic_reference:SL2.40ch08 gene_region:27386390-27389266 transcript_region:SL2.40ch08:27386390..27389266+ go_terms:GO:0010176 functional_description:"Homogentisate phytyltransferase (AHRD V1 **-* D9IXA0_SOLTU); contains Interpro domain(s) IPR000537 UbiA prenyltransferase "; GO:0010176 NbS00030900g0009.1 protein AED:0.30 eAED:0.36 QI:0|0|0|0.8|0.25|0.2|5|0|382; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00019507g0008.1 protein AED:0.09 eAED:0.09 QI:214|1|0.8|1|1|1|5|490|229; (*GB) gi|255538294|ref|XP_002510212.1| (e_value=2e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G42900.2 (e_value=5e-24) | Symbols: | cold regulated gene 27 | chr5:17198366-17199712 REVERSE LENGTH=246;; (*ITAG) Solyc04g078880.2.1 (e_value=7e-102) genomic_reference:SL2.40ch04 gene_region:61132632-61135034 transcript_region:SL2.40ch04:61132632..61135034+ functional_description:"Genomic DNA chromosome 5 P1 clone MBD2 (AHRD V1 ***- Q9FMM9_ARATH)"; NbS00019507g0009.1 protein AED:0.19 eAED:0.19 QI:501|1|1|1|0.83|0.69|13|246|530; (*GB) gi|356564186|ref|XP_003550337.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max];; (*SWP) sp|Q7TSE6|ST38L_MOUSE (e_value=1e-144) Serine/threonine-protein kinase 38-like OS=Mus musculus GN=Stk38l PE=1 SV=2;; (*TAIR) AT5G09890.1 (e_value=0.0) | Symbols: | Protein kinase family protein | chr5:3085810-3088842 REVERSE LENGTH=515;; (*ITAG) Solyc04g078870.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:61124391-61131156 transcript_region:SL2.40ch04:61124391..61131156+ go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00030743g0005.1 protein AED:0.22 eAED:0.22 QI:125|0.8|0.66|1|0.4|0.5|6|0|264; (*GB) gi|151347473|gb|ABS01349.1| (e_value=4e-180) hypersensitive-induced response protein [Carica papaya];; (*SWP) sp|Q9FM19|HIR1_ARATH (e_value=9e-175) Hypersensitive-induced response protein 1 OS=Arabidopsis thaliana GN=HIR1 PE=1 SV=1;; (*TAIR) AT5G62740.1 (e_value=7e-176) | Symbols: HIR1, ATHIR1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:25201320-25202535 FORWARD LENGTH=286;; (*ITAG) Solyc06g071050.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:40043522-40046056 transcript_region:SL2.40ch06:40043522..40046056- go_terms:GO:0005102 functional_description:"Spfh domain / band 7 family protein (AHRD V1 **-- B4AS86_FRANO); contains Interpro domain(s) IPR001107 Band 7 protein "; GO:0005102 NbS00060018g0005.1 protein AED:0.10 eAED:0.12 QI:0|0|0|1|0|0|3|0|123; (*ITAG) Solyc11g071380.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:51959297-51959851 transcript_region:SL2.40ch11:51959297..51959851- functional_description:"Unknown Protein (AHRD V1)"; NbS00052678g0003.1 protein AED:0.15 eAED:0.20 QI:0|0.42|0.25|1|0.28|0.25|8|0|364; (*GB) gi|357492809|ref|XP_003616693.1| (e_value=6e-167) CCP [Medicago truncatula];; (*TAIR) AT2G40320.1 (e_value=8e-160) | Symbols: TBL33 | TRICHOME BIREFRINGENCE-LIKE 33 | chr2:16840330-16842139 FORWARD LENGTH=425;; (*ITAG) Solyc05g052430.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:61800392-61803834 transcript_region:SL2.40ch05:61800392..61803834- functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00007224g0014.1 protein AED:0.08 eAED:0.11 QI:0|0|0|0.5|0|0.5|2|0|215; (*GB) gi|147856522|emb|CAN82837.1| (e_value=2e-44) hypothetical protein VITISV_030872 [Vitis vinifera];; (*TAIR) AT5G65030.1 (e_value=2e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25975697-25976305 REVERSE LENGTH=202;; (*ITAG) Solyc03g078620.1.1 (e_value=2e-49) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:44783286-44783894 transcript_region:SL2.40ch03:44783286..44783894- functional_description:"Unknown Protein (AHRD V1)"; NbS00007224g0010.1 protein AED:0.18 eAED:0.18 QI:179|1|0.75|1|0.66|0.5|4|0|186; (*GB) gi|356567722|ref|XP_003552066.1| (e_value=1e-95) PREDICTED: uncharacterized protein LOC100804656 [Glycine max];; (*TAIR) AT4G39860.1 (e_value=7e-72) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 152 Blast hits to 146 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 146; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr4:18499909-18501472 FORWARD LENGTH=299;; (*ITAG) Solyc04g055160.2.1 (e_value=6e-122) genomic_reference:SL2.40ch04 gene_region:52930068-52933201 transcript_region:SL2.40ch04:52930068..52933201+ functional_description:"cDNA clone J033025P19 full insert sequence (AHRD V1 ***- B7ERC6_ORYSJ)"; NbS00007224g0002.1 protein AED:0.25 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|123; (*GB) gi|1279598|emb|CAA96434.1| (e_value=5e-55) pectin methylesterase [Nicotiana plumbaginifolia];; (*SWP) sp|Q1JPL7|PME18_ARATH (e_value=6e-44) Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3;; (*TAIR) AT1G11580.1 (e_value=5e-45) | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557;; (*ITAG) Solyc02g080200.2.1 (e_value=3e-52) genomic_reference:SL2.40ch02 gene_region:39056506-39058443 transcript_region:SL2.40ch02:39056506..39058443- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9RXQ4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00007224g0013.1 protein AED:0.23 eAED:0.23 QI:284|1|0.8|1|1|1|5|0|316; (*GB) gi|4580920|gb|AAD24540.1|AF113545_1 (e_value=0.0) vacuole-associated annexin VCaB42 [Nicotiana tabacum];; (*SWP) sp|Q9XEE2|ANXD2_ARATH (e_value=5e-168) Annexin D2 OS=Arabidopsis thaliana GN=ANN2 PE=2 SV=1;; (*TAIR) AT5G65020.1 (e_value=4e-169) | Symbols: ANNAT2 | annexin 2 | chr5:25973915-25975554 FORWARD LENGTH=317;; (*ITAG) Solyc04g055170.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52933311-52937146 transcript_region:SL2.40ch04:52933311..52937146- go_terms:GO:0005544,GO:0019834 functional_description:"Annexin 2 (AHRD V1 ***- A9X4R2_BRAJU); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544,GO:0019834 NbS00026035g0001.1 protein AED:0.12 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|120; (*GB) gi|313586501|gb|ADR71261.1| (e_value=4e-62) 60S ribosomal protein L31B [Hevea brasiliensis];; (*SWP) sp|P46290|RL31_NICGU (e_value=5e-62) 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1;; (*TAIR) AT2G19740.1 (e_value=7e-57) | Symbols: | Ribosomal protein L31e family protein | chr2:8513577-8514346 FORWARD LENGTH=119;; (*ITAG) Solyc05g008010.2.1 (e_value=2e-65) genomic_reference:SL2.40ch05 gene_region:2433806-2436121 transcript_region:SL2.40ch05:2433806..2436121- go_terms:GO:0005840 functional_description:"60S ribosomal protein L31 (AHRD V1 ***- B6VC52_VERFO); contains Interpro domain(s) IPR000054 Ribosomal protein L31e "; GO:0005840 NbS00026035g0005.1 protein AED:0.69 eAED:0.78 QI:0|0.25|0|0.6|0.75|0.6|5|0|123; (*GB) gi|224101843|ref|XP_002312442.1| (e_value=8e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6Z2|NUD25_ARATH (e_value=3e-51) Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1;; (*TAIR) AT1G30110.2 (e_value=3e-52) | Symbols: NUDX25 | nudix hydrolase homolog 25 | chr1:10582700-10583821 FORWARD LENGTH=175;; (*ITAG) Solyc05g008000.2.1 (e_value=2e-59) genomic_reference:SL2.40ch05 gene_region:2429400-2433589 transcript_region:SL2.40ch05:2429400..2433589+ go_terms:GO:0004081,GO:0034432 functional_description:"RNA pyrophosphohydrolase (AHRD V1 ***- C9CZW5_9RHOB); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0004081,GO:0034432 NbS00019487g0002.1 protein AED:0.01 eAED:0.17 QI:0|1|0|1|1|1|2|0|548; (*GB) gi|1360141|emb|CAA66616.1| (e_value=0.0) protein kinase [Solanum berthaultii];; (*SWP) sp|A2YBX5|G11A_ORYSI (e_value=0.0) Protein kinase G11A OS=Oryza sativa subsp. indica GN=OsI_021818 PE=2 SV=1;; (*TAIR) AT1G79250.2 (e_value=0.0) | Symbols: AGC1.7 | AGC kinase 1.7 | chr1:29810336-29812186 REVERSE LENGTH=555;; (*ITAG) Solyc12g017390.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6640415-6642426 transcript_region:SL2.40ch12:6640415..6642426+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q41297_9SOLN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00019487g0007.1 protein AED:0.34 eAED:0.35 QI:388|0.44|0.3|0.9|0.55|0.6|10|0|382; (*GB) gi|225458085|ref|XP_002280655.1| (e_value=2e-142) PREDICTED: abhydrolase domain-containing protein 4-like [Vitis vinifera];; (*TAIR) AT4G24160.1 (e_value=2e-93) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12539871-12542210 FORWARD LENGTH=418;; (*ITAG) Solyc07g032180.2.1 (e_value=6e-119) genomic_reference:SL2.40ch07 gene_region:35654272-35659176 transcript_region:SL2.40ch07:35654272..35659176+ functional_description:"Abhydrolase domain-containing protein 5 (AHRD V1 **-- B4FAQ7_MAIZE)"; NbS00044543g0005.1 protein AED:0.10 eAED:0.10 QI:62|1|1|1|1|1|6|318|563; (*GB) gi|147798263|emb|CAN63457.1| (e_value=0.0) hypothetical protein VITISV_008241 [Vitis vinifera];; (*SWP) sp|O82343|Y2626_ARATH (e_value=0.0) BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2;; (*TAIR) AT2G46260.1 (e_value=0.0) | Symbols: | BTB/POZ/Kelch-associated protein | chr2:18996111-18998463 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00044543g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|495; (*GB) gi|225426063|ref|XP_002275970.1| (e_value=0.0) PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera];; (*SWP) sp|P21577|6PGD_SYNE7 (e_value=0.0) 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4;; (*TAIR) AT5G41670.2 (e_value=0.0) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr5:16665647-16667110 REVERSE LENGTH=487;; (*ITAG) Solyc12g056120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47444899-47446389 transcript_region:SL2.40ch12:47444899..47446389+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"6-phosphogluconate dehydrogenase decarboxylating (AHRD V1 ***- Q9FFR3_ARATH); contains Interpro domain(s) IPR006113 6-phosphogluconate dehydrogenase, decarboxylating "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00043588g0008.1 protein AED:0.09 eAED:0.09 QI:182|0.83|0.71|1|0.5|0.57|7|270|643; (*GB) gi|225448387|ref|XP_002274030.1| (e_value=4e-58) PREDICTED: uncharacterized protein LOC100263846 [Vitis vinifera];; (*TAIR) AT2G40070.2 (e_value=7e-48) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink). | chr2:16728378-16731040 REVERSE LENGTH=567;; (*ITAG) Solyc09g014490.2.1 (e_value=8e-116) genomic_reference:SL2.40ch09 gene_region:6111216-6115608 transcript_region:SL2.40ch09:6111216..6115608- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00038675g0008.1 protein AED:0.02 eAED:0.02 QI:0|0.5|0.33|1|0.5|0.33|3|0|632; (*GB) gi|255572339|ref|XP_002527108.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q98TX3|PDCD4_CHICK (e_value=1e-26) Programmed cell death protein 4 OS=Gallus gallus GN=PDCD4 PE=2 SV=1;; (*TAIR) AT1G22730.1 (e_value=0.0) | Symbols: | MA3 domain-containing protein | chr1:8046511-8048769 FORWARD LENGTH=693;; (*ITAG) Solyc04g072130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:56753220-56756514 transcript_region:SL2.40ch04:56753220..56756514- go_terms:GO:0005515 functional_description:"Programmed cell death 4a (AHRD V1 *--- D3TLD2_GLOMM); contains Interpro domain(s) IPR003891 Initiation factor eIF-4 gamma, MA3 "; GO:0005515 NbS00004488g0010.1 protein AED:0.11 eAED:0.11 QI:0|1|0.5|1|1|1|2|0|1105; (*GB) gi|46396756|sp|P93194.2|RPK1_IPONI (e_value=0.0) RecName: Full=Receptor-like protein kinase; Flags: Precursor;; (*SWP) sp|P93194|RPK1_IPONI (e_value=0.0) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT1G73080.1 (e_value=0.0) | Symbols: PEPR1, ATPEPR1 | PEP1 receptor 1 | chr1:27484513-27488021 FORWARD LENGTH=1123;; (*ITAG) Solyc03g123860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64604414-64608013 transcript_region:SL2.40ch03:64604414..64608013+ go_terms:GO:0001653 functional_description:"Receptor like kinase, RLK"; GO:0001653 NbS00004488g0011.1 protein AED:0.09 eAED:0.11 QI:0|0.8|0.5|1|0.8|0.66|6|0|669; (*GB) gi|225443272|ref|XP_002273552.1| (e_value=0.0) PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O04130|SERA_ARATH (e_value=0.0) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT1G17745.1 (e_value=0.0) | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase | chr1:6101157-6104979 FORWARD LENGTH=624;; (*ITAG) Solyc03g123830.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64593806-64596894 transcript_region:SL2.40ch03:64593806..64596894+ go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00004488g0012.1 protein AED:0.31 eAED:0.31 QI:197|1|1|1|1|1|7|0|263; (*GB) gi|298204782|emb|CBI25280.3| (e_value=9e-92) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9WVB0|RBPMS_MOUSE (e_value=2e-16) RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms PE=2 SV=1;; (*TAIR) AT3G21215.1 (e_value=7e-85) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:7442873-7445231 REVERSE LENGTH=339;; (*ITAG) Solyc03g123840.2.1 (e_value=1e-101) genomic_reference:SL2.40ch03 gene_region:64597421-64602015 transcript_region:SL2.40ch03:64597421..64602015+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein with multiple splicing 2 (Fragment) (AHRD V1 *--- A5YBM9_HORSE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00042077g0005.1 protein AED:0.07 eAED:0.07 QI:0|0.5|1|1|1|0.66|3|0|1217; (*GB) gi|359486371|ref|XP_002273775.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250037 [Vitis vinifera];; (*SWP) sp|O76460|RAD54_DROME (e_value=2e-30) DNA repair and recombination protein RAD54-like OS=Drosophila melanogaster GN=okr PE=1 SV=1;; (*TAIR) AT5G20420.1 (e_value=0.0) | Symbols: CHR42 | chromatin remodeling 42 | chr5:6899015-6903266 REVERSE LENGTH=1261;; (*ITAG) Solyc06g050510.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29683679-29690586 transcript_region:SL2.40ch06:29683679..29690586- go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2ULH2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00002376g0005.1 protein AED:0.25 eAED:0.28 QI:156|1|0|1|0|0|2|0|86 NbS00002376g0006.1 protein AED:0.43 eAED:0.72 QI:0|0|0|1|0|0|2|0|64; (*ITAG) Solyc01g086750.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:73460546-73476879 transcript_region:SL2.40ch01:73460546..73476879- go_terms:GO:0003743 functional_description:"Protein TIF31 homolog (AHRD V1 ***- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0003743 NbS00002376g0117.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|0.16|0.14|7|0|836 NbS00002376g0108.1 protein AED:0.43 eAED:0.74 QI:0|0|0|0.75|1|1|4|0|77 NbS00002376g0113.1 protein AED:0.14 eAED:0.16 QI:259|0.75|0.55|1|0.75|0.66|9|327|470 NbS00002376g0107.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|4|0|83 NbS00002376g0115.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|0|0|2|0|190 NbS00002376g0116.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|116 NbS00002376g0114.1 protein AED:0.38 eAED:0.42 QI:0|0|0|1|0|0|2|0|91 NbS00002376g0212.1 protein AED:0.12 eAED:0.12 QI:0|0.83|0.73|0.89|0.77|0.78|19|0|828 NbS00017455g0012.1 protein AED:0.05 eAED:0.05 QI:144|0.83|0.71|1|0.83|0.71|7|376|474; (*GB) gi|147780310|emb|CAN61437.1| (e_value=0.0) hypothetical protein VITISV_033770 [Vitis vinifera];; (*SWP) sp|Q6NQK2|NAC8_ARATH (e_value=5e-65) NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1;; (*TAIR) AT4G29230.1 (e_value=6e-162) | Symbols: anac075, NAC075 | NAC domain containing protein 75 | chr4:14410338-14414956 FORWARD LENGTH=498;; (*ITAG) Solyc05g026180.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:40024726-40030220 transcript_region:SL2.40ch05:40024726..40030220+ go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9H8X7_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00017455g0001.1 protein AED:0.51 eAED:0.51 QI:0|-1|0|1|-1|1|1|0|82; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-27) hypothetical protein [Nicotiana tabacum]; NbS00059815g0008.1 protein AED:0.14 eAED:0.16 QI:0|0.44|0.3|1|0.77|0.7|10|0|1055; (*GB) gi|224132530|ref|XP_002321339.1| (e_value=0.0) multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=0.0) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=0.0) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc06g072960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00059815g0009.1 protein AED:0.54 eAED:0.54 QI:0|1|0|1|1|1|2|0|113; (*GB) gi|255549212|ref|XP_002515660.1| (e_value=2e-36) multidrug resistance protein 1, 2, putative [Ricinus communis];; (*SWP) sp|Q9M1Q9|AB21B_ARATH (e_value=5e-12) ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2;; (*TAIR) AT3G62150.1 (e_value=4e-13) | Symbols: PGP21 | P-glycoprotein 21 | chr3:23008755-23013579 REVERSE LENGTH=1296;; (*ITAG) Solyc06g072950.1.1 (e_value=8e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41354896-41355647 transcript_region:SL2.40ch06:41354896..41355647+ go_terms:GO:0016021 functional_description:"ABC transporter-like protein (AHRD V1 ***- Q2V606_BRACM); contains Interpro domain(s) IPR017940 ABC transporter integral membrane type 1 "; GO:0016021 NbS00059815g0007.1 protein AED:0.46 eAED:0.46 QI:0|0|0|1|0|0|2|0|119; (*GB) gi|359490850|ref|XP_002269539.2| (e_value=8e-36) PREDICTED: ABC transporter B family member 19-like [Vitis vinifera];; (*SWP) sp|Q9FWX7|AB11B_ARATH (e_value=2e-25) ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1;; (*TAIR) AT1G02520.1 (e_value=2e-26) | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278;; (*ITAG) Solyc06g072960.1.1 (e_value=2e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00026243g0004.1 protein AED:0.17 eAED:0.17 QI:57|1|1|1|0.8|0.90|11|307|474; (*GB) gi|45935147|gb|AAS79605.1| (e_value=0.0) putative tRNA isopentenylpyrophosphatase [Ipomoea trifida];; (*SWP) sp|Q9ZUX7|IPT2_ARATH (e_value=8e-167) tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2;; (*TAIR) AT2G27760.1 (e_value=6e-168) | Symbols: ATIPT2, IPPT, IPT2 | tRNAisopentenyltransferase 2 | chr2:11824860-11827432 FORWARD LENGTH=466;; (*ITAG) Solyc11g066960.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49825706-49832412 transcript_region:SL2.40ch11:49825706..49832412- go_terms:GO:0008033 functional_description:"tRNA dimethylallyltransferase (AHRD V1 ***- C5FRC3_NANOT); contains Interpro domain(s) IPR002627 tRNA isopentenyltransferase "; GO:0008033 NbS00026243g0005.1 protein AED:0.27 eAED:0.31 QI:0|0|0|1|0|0|2|0|93; (*GB) gi|225436329|ref|XP_002268144.1| (e_value=1e-35) PREDICTED: uncharacterized protein At5g22580 [Vitis vinifera];; (*SWP) sp|Q9FK81|Y5258_ARATH (e_value=1e-33) Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1;; (*TAIR) AT5G22580.1 (e_value=9e-35) | Symbols: | Stress responsive A/B Barrel Domain | chr5:7502709-7503137 FORWARD LENGTH=111;; (*ITAG) Solyc11g066950.1.1 (e_value=2e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49822708-49823877 transcript_region:SL2.40ch11:49822708..49823877- functional_description:"Stress responsive A/B barrel domain family protein (AHRD V1 ***- D7HD13_VIBCH); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00061770g0001.1 protein AED:0.13 eAED:0.13 QI:0|0.75|0.44|1|1|1|9|0|669; (*GB) gi|255567212|ref|XP_002524587.1| (e_value=0.0) Xylem serine proteinase 1 precursor, putative [Ricinus communis];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=9e-147) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT2G04160.1 (e_value=0.0) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc12g011140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3975873-3981612 transcript_region:SL2.40ch12:3975873..3981612- go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00001389g0006.1 protein AED:0.09 eAED:0.09 QI:24|1|1|1|0|0.5|2|8|94; (*GB) gi|225423607|ref|XP_002274221.1| (e_value=3e-38) PREDICTED: GTP-binding protein ERG-like [Vitis vinifera];; (*SWP) sp|O82626|ERG_ANTMA (e_value=3e-36) GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1;; (*TAIR) AT1G30960.1 (e_value=7e-35) | Symbols: | GTP-binding family protein | chr1:11037755-11039977 REVERSE LENGTH=437;; (*ITAG) Solyc02g081660.2.1 (e_value=4e-48) genomic_reference:SL2.40ch02 gene_region:40107112-40113981 transcript_region:SL2.40ch02:40107112..40113981+ go_terms:GO:0003924 functional_description:"GTP-binding protein era homolog (AHRD V1 ***- D7AAD9_STAND); contains Interpro domain(s) IPR005662 GTP-binding protein Era "; GO:0003924 NbS00001389g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|444; (*GB) gi|207083721|gb|ACI23252.1| (e_value=0.0) ANANTHA [Solanum lycopersicum];; (*SWP) sp|Q39090|UFO_ARATH (e_value=8e-177) Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2;; (*TAIR) AT1G30950.1 (e_value=6e-178) | Symbols: UFO | F-box family protein | chr1:11036180-11037508 FORWARD LENGTH=442;; (*ITAG) Solyc02g081670.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40120235-40121602 transcript_region:SL2.40ch02:40120235..40121602+ go_terms:GO:0008134,GO:0004842 functional_description:"Fimbriata (Fragment) (AHRD V1 **-- Q6QVW9_MIMLE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0008134,GO:0004842 NbS00006055g0013.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|1|1|2|236|405; (*GB) gi|74474911|dbj|BAE44439.1| (e_value=9e-143) protein phosphatase 2C [Solanum tuberosum];; (*SWP) sp|Q8RX37|P2C02_ARATH (e_value=9e-115) Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1;; (*TAIR) AT1G07160.1 (e_value=7e-116) | Symbols: | Protein phosphatase 2C family protein | chr1:2198155-2199678 REVERSE LENGTH=380;; (*ITAG) Solyc06g082080.2.1 (e_value=1e-168) genomic_reference:SL2.40ch06 gene_region:44304768-44306777 transcript_region:SL2.40ch06:44304768..44306777+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_BOVIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00006055g0014.1 protein AED:0.25 eAED:0.25 QI:204|1|1|1|1|1|9|529|387; (*GB) gi|116292768|gb|ABJ97690.1| (e_value=0.0) EBP1 [Solanum tuberosum];; (*SWP) sp|P50580|PA2G4_MOUSE (e_value=2e-103) Proliferation-associated protein 2G4 OS=Mus musculus GN=Pa2g4 PE=1 SV=3;; (*TAIR) AT3G51800.3 (e_value=0.0) | Symbols: ATG2 | metallopeptidase M24 family protein | chr3:19211261-19213568 REVERSE LENGTH=385;; (*ITAG) Solyc06g082090.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44317047-44320702 transcript_region:SL2.40ch06:44317047..44320702+ go_terms:GO:0003700 functional_description:"Methionine aminopeptidase (AHRD V1 **-- C5FF46_NANOT); contains Interpro domain(s) IPR004545 Proliferation-associated protein 1 "; GO:0003700 NbS00006055g0001.1 protein AED:0.84 eAED:0.84 QI:0|0|0|0.5|1|1|2|0|173; (*ITAG) Solyc00g201460.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:18872394-18873456 transcript_region:SL2.40ch00:18872394..18873456- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00029122g0003.1 protein AED:0.26 eAED:0.74 QI:85|1|0.5|1|0|0|2|0|89 NbS00029122g0001.1 protein AED:0.32 eAED:0.32 QI:0|-1|0|1|-1|1|1|0|143; (*GB) gi|22128591|gb|AAM52341.1| (e_value=6e-56) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-32) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-33) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007280.2.1 (e_value=1e-61) genomic_reference:SL2.40ch06 gene_region:1314902-1316191 transcript_region:SL2.40ch06:1314902..1316191- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00029122g0008.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|523; (*GB) gi|22128587|gb|AAM52339.1| (e_value=0.0) fertility restorer [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=1e-121) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=1e-121) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007300.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00029122g0007.1 protein AED:0.45 eAED:0.78 QI:0|0|0|1|0|0|2|0|126; (*ITAG) Solyc06g007850.2.1 (e_value=3e-17) genomic_reference:SL2.40ch06 gene_region:1750049-1752394 transcript_region:SL2.40ch06:1750049..1752394- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00029122g0009.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|0|0|2|0|77 NbS00007335g0016.1 protein AED:0.24 eAED:0.24 QI:97|0.87|1|1|0.62|0.66|9|282|290; (*GB) gi|225445104|ref|XP_002283713.1| (e_value=3e-155) PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q54RA4|Y3291_DICDI (e_value=9e-36) Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1;; (*TAIR) AT1G35190.1 (e_value=8e-135) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:12890544-12892632 FORWARD LENGTH=329;; (*ITAG) Solyc05g018130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:20050624-20056431 transcript_region:SL2.40ch05:20050624..20056431+ go_terms:GO:0045544 functional_description:"Oxidoreductase 2OG-Fe(II) oxygenase family (AHRD V1 **-- Q4KIS1_PSEF5); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00007335g0116.1 protein AED:0.38 eAED:0.39 QI:41|0.25|0|0.6|0.5|0.6|5|0|139 NbS00007335g0104.1 protein AED:0.31 eAED:0.41 QI:0|0|0|1|1|1|4|0|273 NbS00007335g0115.1 protein AED:0.14 eAED:0.14 QI:540|1|1|1|0.5|0.66|3|201|65 NbS00007335g0106.1 protein AED:0.22 eAED:0.22 QI:235|1|1|1|0.62|0.44|9|459|218 NbS00005255g0013.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|4|364|472; (*GB) gi|225445951|ref|XP_002264547.1| (e_value=0.0) PREDICTED: uncharacterized membrane protein At1g16860 [Vitis vinifera];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=0.0) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT1G16860.1 (e_value=0.0) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr1:5768280-5770183 FORWARD LENGTH=474;; (*ITAG) Solyc12g017450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6713635-6717263 transcript_region:SL2.40ch12:6713635..6717263+ functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbS00005255g0017.1 protein AED:0.11 eAED:0.11 QI:0|0|0|1|0|0.5|2|0|356; (*GB) gi|357528933|gb|AET80687.1| (e_value=3e-141) putative spermidine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|Q94FT4|SALAT_PAPSO (e_value=2e-25) Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1;; (*TAIR) AT3G26040.1 (e_value=4e-34) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc12g010980.1.1 (e_value=1e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3842393-3843730 transcript_region:SL2.40ch12:3842393..3843730- go_terms:GO:0016747 functional_description:"Acyltransferase-like protein (AHRD V1 **-- Q589X7_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00005255g0019.1 protein AED:0.09 eAED:0.13 QI:0|0.85|0.86|1|0.64|0.8|15|0|580; (*GB) gi|225470666|ref|XP_002269299.1| (e_value=0.0) PREDICTED: putative clathrin assembly protein At5g57200 [Vitis vinifera];; (*SWP) sp|Q9LVD8|CAP7_ARATH (e_value=0.0) Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=2 SV=1;; (*TAIR) AT5G57200.1 (e_value=0.0) | Symbols: | ENTH/ANTH/VHS superfamily protein | chr5:23177696-23180601 FORWARD LENGTH=591;; (*ITAG) Solyc02g043810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:22303511-22307099 transcript_region:SL2.40ch02:22303511..22307099+ go_terms:GO:0005488 functional_description:"Phosphatidylinositol binding clathrin assembly protein like (AHRD V1 *-** Q6AXI5_DANRE); contains Interpro domain(s) IPR011417 ANTH "; GO:0005488 NbS00005255g0002.1 protein AED:0.13 eAED:0.13 QI:0|-1|0|1|-1|1|1|0|371; (*GB) gi|297728401|ref|NP_001176564.1| (e_value=4e-110) Os11g0521000 [Oryza sativa Japonica Group];; (*SWP) sp|Q9LZB2|GDL74_ARATH (e_value=1e-98) GDSL esterase/lipase At5g03980 OS=Arabidopsis thaliana GN=At5g03980 PE=2 SV=1;; (*TAIR) AT5G03980.1 (e_value=1e-99) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr5:1074205-1075289 REVERSE LENGTH=323;; (*ITAG) Solyc12g017460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6720509-6721618 transcript_region:SL2.40ch12:6720509..6721618- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g28590 (AHRD V1 ***- GDL8_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00005255g0018.1 protein AED:0.43 eAED:0.62 QI:0|0|0|1|0|0|2|0|61 NbS00023174g0003.1 protein AED:0.12 eAED:0.19 QI:0|1|0|1|0|0.5|2|0|432; (*GB) gi|255569898|ref|XP_002525912.1| (e_value=1e-176) DELLA protein SLR1, putative [Ricinus communis];; (*SWP) sp|Q9LPR8|SCL3_ARATH (e_value=1e-106) Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1;; (*TAIR) AT1G50420.1 (e_value=8e-108) | Symbols: SCL3, SCL-3 | scarecrow-like 3 | chr1:18678177-18679625 REVERSE LENGTH=482;; (*ITAG) Solyc12g099900.1.1 (e_value=6e-109) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65187350-65188756 transcript_region:SL2.40ch12:65187350..65188756+ functional_description:"GRAS family transcription factor (Fragment) (AHRD V1 **-- B9NHP2_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00032019g0001.1 protein AED:0.66 eAED:0.66 QI:0|1|0.5|1|0|0|2|99|91; (*GB) gi|357131521|ref|XP_003567385.1| (e_value=5e-35) PREDICTED: coatomer subunit beta-2-like isoform 2 [Brachypodium distachyon];; (*SWP) sp|Q53PC7|COPB1_ORYSJ (e_value=6e-36) Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1;; (*TAIR) AT4G31480.2 (e_value=5e-36) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc10g081920.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62184972-62189867 transcript_region:SL2.40ch10:62184972..62189867- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00017354g0007.1 protein AED:0.03 eAED:0.03 QI:345|1|1|1|0.66|0.5|4|969|364; (*GB) gi|147794067|emb|CAN77841.1| (e_value=6e-61) hypothetical protein VITISV_015562 [Vitis vinifera];; (*TAIR) AT4G17940.1 (e_value=2e-33) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9965787-9966778 FORWARD LENGTH=274;; (*ITAG) Solyc09g064630.2.1 (e_value=3e-158) genomic_reference:SL2.40ch09 gene_region:57551580-57553691 transcript_region:SL2.40ch09:57551580..57553691+ go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00017354g0008.1 protein AED:0.29 eAED:0.29 QI:0|1|0.84|1|0.83|0.92|13|33|796; (*GB) gi|225437987|ref|XP_002272685.1| (e_value=0.0) PREDICTED: pre-mRNA-processing factor 39-like [Vitis vinifera];; (*SWP) sp|Q4KLU2|PRP39_XENLA (e_value=3e-82) Pre-mRNA-processing factor 39 OS=Xenopus laevis GN=prpf39 PE=2 SV=1;; (*TAIR) AT1G04080.1 (e_value=0.0) | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1051803-1056550 FORWARD LENGTH=768;; (*ITAG) Solyc09g064590.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:57503092-57521801 transcript_region:SL2.40ch09:57503092..57521801+ go_terms:GO:0030627 functional_description:"Pre-mRNA-processing factor 39 (AHRD V1 *-** C5FSC0_NANOT); contains Interpro domain(s) IPR003107 RNA-processing protein, HAT helix "; GO:0030627 NbS00005903g0003.1 protein AED:0.35 eAED:0.35 QI:94|0.90|0.91|1|0.81|0.91|12|495|423; (*GB) gi|225465185|ref|XP_002263398.1| (e_value=0.0) PREDICTED: shaggy-related protein kinase kappa [Vitis vinifera];; (*SWP) sp|Q39019|KSG10_ARATH (e_value=0.0) Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=2;; (*TAIR) AT1G09840.6 (e_value=0.0) | Symbols: ATSK41, SK41 | shaggy-like protein kinase 41 | chr1:3196114-3199524 REVERSE LENGTH=421;; (*ITAG) Solyc01g103430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83804323-83813569 transcript_region:SL2.40ch01:83804323..83813569+ go_terms:GO:0004696 functional_description:"Glycogen synthase kinase (AHRD V1 **** C7AE95_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004696 NbS00050071g0005.1 protein AED:0.17 eAED:0.17 QI:0|0|0.25|0.5|0.66|0.75|4|118|71 NbS00013772g0017.1 protein AED:0.18 eAED:0.20 QI:0|0.33|0.30|0.84|0.5|0.61|13|244|933; (*GB) gi|224136139|ref|XP_002322249.1| (e_value=3e-123) predicted protein [Populus trichocarpa];; (*TAIR) AT5G41020.1 (e_value=5e-102) | Symbols: | myb family transcription factor | chr5:16425883-16427649 REVERSE LENGTH=588;; (*ITAG) Solyc03g019800.2.1 (e_value=6e-177) genomic_reference:SL2.40ch03 gene_region:6726971-6728769 transcript_region:SL2.40ch03:6726971..6728769- go_terms:GO:0003677 functional_description:"Myb-like protein B (AHRD V1 *-*- MYBB_DICDI); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00013772g0016.1 protein AED:0.27 eAED:0.30 QI:0|0.83|0.71|1|0.5|0.71|7|383|329; (*GB) gi|224101805|ref|XP_002312427.1| (e_value=4e-99) predicted protein [Populus trichocarpa];; (*TAIR) AT2G01275.2 (e_value=6e-84) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259;; (*ITAG) Solyc05g008390.2.1 (e_value=4e-151) genomic_reference:SL2.40ch05 gene_region:2756559-2760072 transcript_region:SL2.40ch05:2756559..2760072- go_terms:GO:0005515 functional_description:"RING zinc finger-containing protein (AHRD V1 *--- Q54MR8_DICDI); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00013772g0024.1 protein AED:0.16 eAED:0.16 QI:171|1|1|1|0.7|0.81|11|465|521; (*GB) gi|351727427|ref|NP_001238440.1| (e_value=0.0) protein disulfide family pdiq-1a precursor [Glycine max];; (*SWP) sp|Q8W4J3|QSOX1_ARATH (e_value=0.0) Sulfhydryl oxidase 1 OS=Arabidopsis thaliana GN=QSOX1 PE=2 SV=1;; (*TAIR) AT1G15020.2 (e_value=0.0) | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydryl oxidase 1 | chr1:5173341-5176105 REVERSE LENGTH=528;; (*ITAG) Solyc04g007610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:1288587-1297443 transcript_region:SL2.40ch04:1288587..1297443- go_terms:GO:0045454,GO:0055114 functional_description:"Protein disulfide-isomerase (AHRD V1 *--- P93358_TOBAC); contains Interpro domain(s) IPR006863 Erv1/Alr "; GO:0045454,GO:0055114 NbS00013772g0025.1 protein AED:0.27 eAED:0.27 QI:318|0.77|0.7|1|0.33|0.5|10|227|574; (*GB) gi|224108357|ref|XP_002314819.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT1G71110.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:26818244-26820852 FORWARD LENGTH=557;; (*ITAG) Solyc05g008380.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2746509-2753310 transcript_region:SL2.40ch05:2746509..2753310+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022522g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|255; (*GB) gi|225448491|ref|XP_002272706.1| (e_value=7e-83) PREDICTED: uncharacterized protein LOC100260493 [Vitis vinifera];; (*SWP) sp|Q9FDW1|MYB44_ARATH (e_value=5e-50) Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1;; (*TAIR) AT4G37260.1 (e_value=4e-53) | Symbols: MYB73, ATMYB73 | myb domain protein 73 | chr4:17540602-17541564 FORWARD LENGTH=320;; (*ITAG) Solyc09g011780.2.1 (e_value=1e-56) genomic_reference:SL2.40ch09 gene_region:5070696-5075388 transcript_region:SL2.40ch09:5070696..5075388- go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R080_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00022522g0004.1 protein AED:0.92 eAED:0.92 QI:0|0|0|0.33|1|1|3|0|77 NbS00006911g0001.1 protein AED:0.02 eAED:0.02 QI:286|0|0.5|1|0|0.5|2|0|422; (*GB) gi|347953950|gb|AEP33595.1| (e_value=0.0) CBL-interacting protein kinase 6 [Solanum lycopersicum];; (*SWP) sp|O65554|CIPK6_ARATH (e_value=0.0) CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1;; (*TAIR) AT4G30960.1 (e_value=0.0) | Symbols: CIPK6, SIP3, SNRK3.14, ATCIPK6 | SOS3-interacting protein 3 | chr4:15067400-15068725 FORWARD LENGTH=441;; (*ITAG) Solyc12g010130.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3267183-3268481 transcript_region:SL2.40ch12:3267183..3268481+ go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 7 (AHRD V1 ***- A0MNJ4_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00006911g0012.1 protein AED:0.04 eAED:0.04 QI:236|1|0.9|1|0.44|0.5|10|615|649; (*GB) gi|224142397|ref|XP_002324545.1| (e_value=8e-116) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56X72|RTNLS_ARATH (e_value=8e-84) Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2;; (*TAIR) AT5G58000.1 (e_value=6e-85) | Symbols: | Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487;; (*ITAG) Solyc12g010120.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3251391-3256639 transcript_region:SL2.40ch12:3251391..3256639+ go_terms:GO:0005783 functional_description:"Reticulon-like protein B21 (AHRD V1 *-*- RTNLS_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00006911g0003.1 protein AED:0.25 eAED:0.25 QI:373|0|0.5|1|0|0.5|2|0|405; (*GB) gi|224054892|ref|XP_002298383.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX66|HERK_ARATH (e_value=7e-178) Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1;; (*TAIR) AT3G46290.1 (e_value=5e-179) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830;; (*ITAG) Solyc11g072910.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53154682-53157186 transcript_region:SL2.40ch11:53154682..53157186- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00006911g0013.1 protein AED:0.64 eAED:0.70 QI:54|0|0.33|0.66|0.5|0.66|3|298|98 NbS00006911g0015.1 protein AED:0.41 eAED:0.41 QI:0|0|0|0.6|0|0|5|0|212; (*GB) gi|84458470|dbj|BAE72066.1| (e_value=5e-27) hypothetical protein [Nicotiana tabacum]; NbS00008805g0002.1 protein AED:0.17 eAED:0.17 QI:539|1|0.5|1|0|0|2|0|670; (*GB) gi|225424995|ref|XP_002267025.1| (e_value=0.0) PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270 isoform 1 [Vitis vinifera];; (*SWP) sp|Q9C671|P4K2B_ARATH (e_value=0.0) Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1;; (*TAIR) AT2G03890.1 (e_value=0.0) | Symbols: ATPI4K GAMMA 7, UBDK GAMMA 7, PI4K GAMMA 7 | phosphoinositide 4-kinase gamma 7 | chr2:1186199-1188151 FORWARD LENGTH=650;; (*ITAG) Solyc04g005270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:196342-198264 transcript_region:SL2.40ch04:196342..198264- go_terms:GO:0004428 functional_description:"Phosphatidylinositol kinase (AHRD V1 *-** D0MQD8_PHYIN); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0004428 NbS00008805g0006.1 protein AED:0.20 eAED:0.27 QI:0|0|0|1|0|0|4|0|212; (*GB) gi|255547045|ref|XP_002514580.1| (e_value=9e-55) DNA-3-methyladenine glycosylase, putative [Ricinus communis];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=1e-13) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT1G13635.2 (e_value=6e-53) | Symbols: | DNA glycosylase superfamily protein | chr1:4674248-4675784 FORWARD LENGTH=311;; (*ITAG) Solyc04g005260.1.1 (e_value=4e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:192553-194876 transcript_region:SL2.40ch04:192553..194876+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR011257 DNA glycosylase "; GO:0006284,GO:0006281 NbS00058919g0010.1 protein AED:0.12 eAED:0.17 QI:0|0.33|0.14|0.85|0.33|0.42|7|0|336; (*GB) gi|357481187|ref|XP_003610879.1| (e_value=2e-95) hypothetical protein MTR_5g008050 [Medicago truncatula];; (*SWP) sp|P80595|APY_SOLTU (e_value=5e-13) Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2;; (*TAIR) AT5G17170.1 (e_value=3e-90) | Symbols: ENH1 | rubredoxin family protein | chr5:5649335-5650975 FORWARD LENGTH=271;; (*ITAG) Solyc03g096850.2.1 (e_value=4e-116) genomic_reference:SL2.40ch03 gene_region:52677249-52679984 transcript_region:SL2.40ch03:52677249..52679984+ go_terms:GO:0005515,GO:0046872 functional_description:"Genomic DNA chromosome 5 P1 clone MKP11 (AHRD V1 **-- Q9FFJ2_ARATH); contains Interpro domain(s) IPR001478 PDZ/DHR/GLGF "; GO:0005515,GO:0046872 NbS00058919g0007.1 protein AED:0.34 eAED:0.37 QI:0|0|0|1|0|0|2|0|379; (*GB) gi|225456534|ref|XP_002264929.1| (e_value=4e-108) PREDICTED: sulfotransferase 17-like [Vitis vinifera];; (*SWP) sp|Q9FZ80|SOT17_ARATH (e_value=2e-92) Cytosolic sulfotransferase 17 OS=Arabidopsis thaliana GN=SOT17 PE=1 SV=1;; (*TAIR) AT1G18590.1 (e_value=1e-93) | Symbols: SOT17, ATSOT17, ATST5C | sulfotransferase 17 | chr1:6398634-6399674 FORWARD LENGTH=346;; (*ITAG) Solyc05g011890.1.1 (e_value=6e-100) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:5114556-5115566 transcript_region:SL2.40ch05:5114556..5115566+ go_terms:GO:0080118 functional_description:"Sulfotransferase family protein (AHRD V1 **** D7LQL2_ARALY); contains Interpro domain(s) IPR000863 Sulfotransferase "; GO:0080118 NbS00002421g0006.1 protein AED:0.01 eAED:0.01 QI:271|1|1|1|1|1|2|298|168; (*GB) gi|359497432|ref|XP_003635513.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100261790 [Vitis vinifera];; (*TAIR) AT1G22160.1 (e_value=3e-25) | Symbols: | Protein of unknown function (DUF581) | chr1:7823238-7823774 FORWARD LENGTH=147;; (*ITAG) Solyc04g054760.2.1 (e_value=7e-55) genomic_reference:SL2.40ch04 gene_region:52350113-52351308 transcript_region:SL2.40ch04:52350113..52351308- functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *-*- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00002421g0007.1 protein AED:0.26 eAED:0.26 QI:0|1|0.9|1|1|1|10|0|510; (*GB) gi|14548096|sp|Q9LW96.1|INO1_TOBAC (e_value=0.0) RecName: Full=Inositol-3-phosphate synthase; Short=MIP synthase; AltName: Full=Myo-inositol 1-phosphate synthase; Short=IPS; Short=MI-1-P synthase;; (*SWP) sp|Q9LW96|INO1_TOBAC (e_value=0.0) Inositol-3-phosphate synthase OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT5G10170.1 (e_value=0.0) | Symbols: ATMIPS3, MIPS3 | myo-inositol-1-phosphate synthase 3 | chr5:3187538-3190161 REVERSE LENGTH=510;; (*ITAG) Solyc04g054740.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:52329390-52332579 transcript_region:SL2.40ch04:52329390..52332579+ go_terms:GO:0042802 functional_description:"Inositol-3-phosphate synthase (AHRD V1 ***- C4PW06_ARATH); contains Interpro domain(s) IPR002587 Myo-inositol-1-phosphate synthase "; GO:0042802 NbS00001623g0018.1 protein AED:0.01 eAED:0.01 QI:0|1|0|1|1|1|2|0|571; (*GB) gi|225432177|ref|XP_002275000.1| (e_value=0.0) PREDICTED: putative pectinesterase/pectinesterase inhibitor 28 [Vitis vinifera];; (*SWP) sp|O80722|PME4_ARATH (e_value=1e-150) Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1;; (*TAIR) AT2G47030.1 (e_value=1e-151) | Symbols: VGDH1 | Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588;; (*ITAG) Solyc06g084620.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:45965112-45966806 transcript_region:SL2.40ch06:45965112..45966806- go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9GEY5_POPTR); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00001623g0020.1 protein AED:0.12 eAED:0.12 QI:277|1|0.5|1|0|0|2|0|95; (*GB) gi|168041683|ref|XP_001773320.1| (e_value=6e-26) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|P70698|PYRG1_MOUSE (e_value=5e-22) CTP synthase 1 OS=Mus musculus GN=Ctps PE=1 SV=2;; (*TAIR) AT1G30820.1 (e_value=6e-28) | Symbols: | CTP synthase family protein | chr1:10945251-10948825 REVERSE LENGTH=600;; (*ITAG) Solyc01g079650.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00001623g0021.1 protein AED:0.14 eAED:0.14 QI:0|1|0|1|1|1|2|0|68; (*GB) gi|356500139|ref|XP_003518891.1| (e_value=2e-24) PREDICTED: CTP synthase-like [Glycine max];; (*SWP) sp|Q7ZXP9|PYG1B_XENLA (e_value=8e-23) CTP synthase 1-B OS=Xenopus laevis GN=ctps-b PE=2 SV=1;; (*TAIR) AT4G02120.1 (e_value=2e-26) | Symbols: | CTP synthase family protein | chr4:940873-944097 FORWARD LENGTH=556;; (*ITAG) Solyc01g079650.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00001623g0019.1 protein AED:0.38 eAED:0.38 QI:188|0.6|0.66|1|0.6|0.33|6|579|101; (*GB) gi|363807932|ref|NP_001242708.1| (e_value=5e-18) uncharacterized protein LOC100788939 [Glycine max];; (*ITAG) Solyc06g084610.2.1 (e_value=1e-39) genomic_reference:SL2.40ch06 gene_region:45961745-45964444 transcript_region:SL2.40ch06:45961745..45964444- functional_description:"Homology to unknown gene (AHRD V1 ***- Q014B2_OSTTA)"; NbS00001623g0025.1 protein AED:0.37 eAED:0.41 QI:189|0.5|0.66|1|0.37|0.66|9|0|123; (*GB) gi|225437503|ref|XP_002269885.1| (e_value=1e-51) PREDICTED: CTP synthase [Vitis vinifera];; (*SWP) sp|Q54V77|PYRG_DICDI (e_value=3e-27) CTP synthase OS=Dictyostelium discoideum GN=ctps PE=3 SV=1;; (*TAIR) AT4G02120.1 (e_value=9e-51) | Symbols: | CTP synthase family protein | chr4:940873-944097 FORWARD LENGTH=556;; (*ITAG) Solyc01g079650.2.1 (e_value=3e-53) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00004470g0002.1 protein AED:0.05 eAED:0.06 QI:0|1|0|1|1|1|2|0|162; (*GB) gi|351723033|ref|NP_001235473.1| (e_value=6e-54) uncharacterized protein LOC100306467 [Glycine max];; (*SWP) sp|Q9LV66|Y5848_ARATH (e_value=3e-18) Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1;; (*TAIR) AT5G48480.1 (e_value=2e-19) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr5:19644814-19645658 FORWARD LENGTH=166;; (*ITAG) Solyc06g007610.2.1 (e_value=4e-46) genomic_reference:SL2.40ch06 gene_region:1605025-1606614 transcript_region:SL2.40ch06:1605025..1606614- go_terms:GO:0003824 functional_description:"Early tobacco anther 1 (AHRD V1 ***- Q84XA0_TOBAC)"; GO:0003824 NbS00004470g0010.1 protein AED:0.03 eAED:0.03 QI:0|0.66|0.5|0.75|0.66|0.75|4|229|148; (*GB) gi|224069908|ref|XP_002303082.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT5G48500.1 (e_value=3e-29) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19653235-19654017 FORWARD LENGTH=167;; (*ITAG) Solyc06g083080.2.1 (e_value=1e-56) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004470g0009.1 protein AED:0.06 eAED:0.08 QI:70|0.66|0.5|1|0.66|0.5|4|72|239; (*GB) gi|8777377|dbj|BAA96967.1| (e_value=2e-83) unnamed protein product [Arabidopsis thaliana];; (*TAIR) AT5G48470.1 (e_value=1e-80) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19641810-19644127 FORWARD LENGTH=397;; (*ITAG) Solyc09g056160.2.1 (e_value=2e-115) genomic_reference:SL2.40ch09 gene_region:42770759-42775847 transcript_region:SL2.40ch09:42770759..42775847+ functional_description:"Genomic DNA chromosome 5 P1 clone MJE7 (AHRD V1 ***- Q9LV67_ARATH)"; NbS00005295g0008.1 protein AED:0.00 eAED:0.00 QI:231|0.85|1|1|0.71|0.62|8|370|170; (*GB) gi|218744593|dbj|BAH03515.1| (e_value=1e-73) centromere specific histone H3 variant [Nicotiana tabacum];; (*SWP) sp|Q8RVQ9|HTR12_ARATH (e_value=4e-41) Histone H3-like centromeric protein HTR12 OS=Arabidopsis thaliana GN=HTR12 PE=1 SV=3;; (*TAIR) AT1G01370.2 (e_value=3e-42) | Symbols: HTR12, CENH3 | Histone superfamily protein | chr1:143773-145400 FORWARD LENGTH=178;; (*ITAG) Solyc01g095650.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:78618500-78623890 transcript_region:SL2.40ch01:78618500..78623890- go_terms:GO:0042802 functional_description:"Histone H3 (AHRD V1 ***- B7XEI9_NICTO); contains Interpro domain(s) IPR000164 Histone H3 "; GO:0042802 NbS00005295g0011.1 protein AED:0.22 eAED:0.22 QI:278|1|1|1|0.5|0.66|3|211|343; (*GB) gi|350539793|ref|NP_001234530.1| (e_value=2e-119) WRKY transcription factor [Solanum lycopersicum];; (*SWP) sp|Q8H0Y8|WRK41_ARATH (e_value=3e-35) Probable WRKY transcription factor 41 OS=Arabidopsis thaliana GN=WRKY41 PE=2 SV=2;; (*TAIR) AT4G11070.2 (e_value=1e-36) | Symbols: WRKY41, AtWRKY41 | WRKY family transcription factor | chr4:6759303-6760763 FORWARD LENGTH=281;; (*ITAG) Solyc01g095630.2.1 (e_value=3e-122) genomic_reference:SL2.40ch01 gene_region:78600553-78602865 transcript_region:SL2.40ch01:78600553..78602865- go_terms:GO:0045449 functional_description:"WRKY transcription factor (AHRD V1 ***- D3YEX5_SOLLC); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00005295g0003.1 protein AED:0.22 eAED:0.22 QI:0|0|0|0.5|1|1|2|0|293; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-31) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc08g044370.1.1 (e_value=2e-67) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31601761-31605568 transcript_region:SL2.40ch08:31601761..31605568- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00018559g0003.1 protein AED:0.37 eAED:0.52 QI:0|0|0|0.6|1|1|5|0|196 NbS00018559g0005.1 protein AED:0.03 eAED:0.03 QI:165|1|1|1|1|1|6|241|298; (*GB) gi|225450721|ref|XP_002279031.1| (e_value=3e-104) PREDICTED: bidirectional sugar transporter SWEET16 [Vitis vinifera];; (*SWP) sp|Q10LN5|SWT16_ORYSJ (e_value=6e-72) Bidirectional sugar transporter SWEET16 OS=Oryza sativa subsp. japonica GN=SWEET16 PE=3 SV=1;; (*TAIR) AT4G15920.1 (e_value=2e-62) | Symbols: SWEET17, AtSWEET17 | Nodulin MtN3 family protein | chr4:9030742-9033343 REVERSE LENGTH=241;; (*ITAG) Solyc01g099880.2.1 (e_value=1e-155) genomic_reference:SL2.40ch01 gene_region:81771099-81774005 transcript_region:SL2.40ch01:81771099..81774005- go_terms:GO:0016021 functional_description:"RAG1-activating protein 1 homolog (AHRD V1 **-- R1AP1_DANRE); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00004121g0010.1 protein AED:0.15 eAED:0.15 QI:77|1|1|1|0.66|0.75|4|236|305; (*GB) gi|156138540|emb|CAO91858.1| (e_value=0.0) putative lysine decarbxylase [Nicotiana tabacum];; (*TAIR) AT1G50575.1 (e_value=8e-125) | Symbols: | Putative lysine decarboxylase family protein | chr1:18728862-18730296 REVERSE LENGTH=306;; (*ITAG) Solyc07g065180.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:64275670-64279633 transcript_region:SL2.40ch07:64275670..64279633+ go_terms:GO:0016831 functional_description:"Decarboxylase family protein (AHRD V1 ***- B6TTZ3_MAIZE); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831 NbS00004121g0011.1 protein AED:0.11 eAED:0.11 QI:146|1|1|1|0.5|0.42|7|330|198; (*GB) gi|82400150|gb|ABB72814.1| (e_value=2e-94) putative 40S ribosomal protein S8-like protein [Solanum tuberosum];; (*SWP) sp|Q08069|RS8_MAIZE (e_value=2e-90) 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2;; (*TAIR) AT5G59240.1 (e_value=7e-87) | Symbols: | Ribosomal protein S8e family protein | chr5:23902626-23903670 REVERSE LENGTH=210;; (*ITAG) Solyc10g006070.2.1 (e_value=7e-97) genomic_reference:SL2.40ch10 gene_region:799256-802747 transcript_region:SL2.40ch10:799256..802747+ go_terms:GO:0003735,GO:0005515 functional_description:"40S ribosomal protein S8 (AHRD V1 ***- Q2XPV9_SOLTU); contains Interpro domain(s) IPR001047 Ribosomal protein S8e "; GO:0003735,GO:0005515 NbS00004121g0006.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.33|1|1|3|0|119; (*ITAG) Solyc03g044840.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00004121g0012.1 protein AED:0.25 eAED:0.26 QI:0|0.5|0|1|0.5|0.33|3|0|165; (*GB) gi|223948621|gb|ACN28394.1| (e_value=3e-29) unknown [Zea mays];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=1e-30) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=3e-30) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc01g014070.1.1 (e_value=1e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:11145625-11146530 transcript_region:SL2.40ch01:11145625..11146530- go_terms:GO:0009055,GO:0055114 functional_description:"Blue copper protein (AHRD V1 *--- B6TCC4_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055,GO:0055114 NbS00022496g0004.1 protein AED:0.16 eAED:0.24 QI:0|0|0|1|0.33|0|4|0|295; (*GB) gi|255569812|ref|XP_002525870.1| (e_value=1e-95) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9SEZ1|HB29_ARATH (e_value=1e-32) Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1;; (*TAIR) AT2G02540.1 (e_value=5e-64) | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox protein 21 | chr2:684302-685234 FORWARD LENGTH=310;; (*ITAG) Solyc01g102980.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:83400300-83402189 transcript_region:SL2.40ch01:83400300..83402189+ go_terms:GO:0016563,GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0016563,GO:0003700 NbS00022496g0005.1 protein AED:0.42 eAED:0.49 QI:0|0|0|1|1|0.66|3|0|132; (*GB) gi|224120026|ref|XP_002331118.1| (e_value=3e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SE83|DRP2A_ARATH (e_value=6e-36) Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2;; (*TAIR) AT1G10290.1 (e_value=5e-37) | Symbols: ADL6, DRP2A | dynamin-like protein 6 | chr1:3370774-3377120 FORWARD LENGTH=914;; (*ITAG) Solyc01g103120.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:83542277-83546067 transcript_region:SL2.40ch01:83542277..83546067- go_terms:GO:0005525 functional_description:"Dynamin-2A (AHRD V1 ***- B6UEQ3_MAIZE); contains Interpro domain(s) IPR011993 Pleckstrin homology-type "; GO:0005525 NbS00026015g0002.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.4|1|1|1|5|120|341; (*GB) gi|357480071|ref|XP_003610321.1| (e_value=3e-74) Methyladenine glycosylase protein-like protein [Medicago truncatula];; (*SWP) sp|Q7VG78|GUAA_HELHP (e_value=1e-19) Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1;; (*TAIR) AT5G57970.2 (e_value=4e-43) | Symbols: | DNA glycosylase superfamily protein | chr5:23467316-23468910 FORWARD LENGTH=347;; (*ITAG) Solyc12g010050.1.1 (e_value=4e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3197533-3200960 transcript_region:SL2.40ch12:3197533..3200960+ go_terms:GO:0006284,GO:0006281 functional_description:"DNA-3-methyladenine glycosylase I (AHRD V1 ***- B6U9I4_MAIZE); contains Interpro domain(s) IPR005019 Methyladenine glycosylase "; GO:0006284,GO:0006281 NbS00043533g0001.1 protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0|3|0|121; (*GB) gi|224070875|ref|XP_002303275.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g119900.2.1 (e_value=4e-42) genomic_reference:SL2.40ch03 gene_region:62484628-62488605 transcript_region:SL2.40ch03:62484628..62488605+ functional_description:"Neurogenic locus notch protein-like (AHRD V1 *-*- B6SSE6_MAIZE); contains Interpro domain(s) IPR006210 EGF-like "; NbS00005145g0010.1 protein AED:0.27 eAED:0.30 QI:421|0.8|0.81|1|0.6|0.63|11|168|410; (*GB) gi|225434233|ref|XP_002280271.1| (e_value=0.0) PREDICTED: probable uridine nucleosidase 2 [Vitis vinifera];; (*SWP) sp|Q8LAC4|URH2_ARATH (e_value=2e-163) Probable uridine nucleosidase 2 OS=Arabidopsis thaliana GN=URH2 PE=2 SV=1;; (*TAIR) AT1G05620.1 (e_value=2e-164) | Symbols: URH2 | uridine-ribohydrolase 2 | chr1:1679286-1681527 FORWARD LENGTH=322;; (*ITAG) Solyc12g018990.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:8921450-8934930 transcript_region:SL2.40ch12:8921450..8934930+ functional_description:"Ribonucleoside hydrolase 1 (AHRD V1 ***- D1RWC6_SEROD); contains Interpro domain(s) IPR001910 Inosine/uridine-preferring nucleoside hydrolase "; NbS00007803g0012.1 protein AED:0.03 eAED:0.06 QI:27|0.85|0.75|1|1|0.87|8|0|764; (*GB) gi|30696040|ref|NP_568757.2| (e_value=9e-91) protein SWITCH1 (protein DYAD) [Arabidopsis thaliana];; (*SWP) sp|Q9FGN8|DYAD_ARATH (e_value=3e-92) Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2;; (*TAIR) AT5G51330.1 (e_value=2e-93) | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858752-20861680 REVERSE LENGTH=639;; (*ITAG) Solyc03g093370.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:48086463-48090464 transcript_region:SL2.40ch03:48086463..48090464- functional_description:"Protein DYAD (AHRD V1 ***- DYAD_ARATH)"; NbS00007803g0006.1 protein AED:0.27 eAED:0.27 QI:1448|1|1|1|0.83|0.57|7|329|147; (*GB) gi|224139182|ref|XP_002326788.1| (e_value=2e-58) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0VMD1|BIOF_ALCBS (e_value=7e-20) 8-amino-7-oxononanoate synthase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=bioF PE=3 SV=1;; (*TAIR) AT5G04620.2 (e_value=4e-56) | Symbols: ATBIOF, BIOF | biotin F | chr5:1327292-1329934 FORWARD LENGTH=476;; (*ITAG) Solyc06g034150.2.1 (e_value=8e-76) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00007803g0004.1 protein AED:0.73 eAED:0.73 QI:0|0|0|0.5|1|1|2|0|91; (*ITAG) Solyc06g034150.2.1 (e_value=1e-16) genomic_reference:SL2.40ch06 gene_region:20400258-20407369 transcript_region:SL2.40ch06:20400258..20407369- go_terms:GO:0009058,GO:0030170 functional_description:"8-amino-7-oxononanoate synthase-like protein (AHRD V1 ***- Q9LZ63_ARATH); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00028093g0004.1 protein AED:0.23 eAED:0.26 QI:0|0.42|0.25|0.87|0.85|0.87|8|461|434; (*GB) gi|15224204|ref|NP_181830.1| (e_value=0.0) putative polyamine oxidase 2 [Arabidopsis thaliana];; (*SWP) sp|Q9SKX5|PAO2_ARATH (e_value=0.0) Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1;; (*TAIR) AT2G43020.1 (e_value=0.0) | Symbols: ATPAO2, PAO2 | polyamine oxidase 2 | chr2:17891945-17894440 FORWARD LENGTH=490;; (*ITAG) Solyc07g043590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54852900-54859105 transcript_region:SL2.40ch07:54852900..54859105+ go_terms:GO:0046592,GO:0008131 functional_description:"Amine oxidase family protein (AHRD V1 **** Q1EPI3_MUSAC); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592,GO:0008131 NbS00010236g0001.1 protein AED:0.21 eAED:0.21 QI:0|0.83|0.71|1|1|1|7|844|897; (*GB) gi|357933583|dbj|BAL15058.1| (e_value=0.0) glutamate receptor 3.5 [Solanum lycopersicum];; (*SWP) sp|Q8GXJ4|GLR34_ARATH (e_value=0.0) Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2;; (*TAIR) AT1G05200.2 (e_value=0.0) | Symbols: ATGLR3.4, GLR3.4, GLUR3 | glutamate receptor 3.4 | chr1:1505642-1509002 FORWARD LENGTH=959;; (*ITAG) Solyc04g082610.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63830521-63835334 transcript_region:SL2.40ch04:63830521..63835334+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00010236g0009.1 protein AED:0.22 eAED:0.23 QI:0|0.71|0.62|1|0.85|0.75|8|0|927; (*GB) gi|225457602|ref|XP_002272934.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100247854 [Vitis vinifera];; (*SWP) sp|Q09499|IRE1_CAEEL (e_value=2e-81) Serine/threonine-protein kinase/endoribonuclease ire-1 OS=Caenorhabditis elegans GN=ire-1 PE=2 SV=2;; (*TAIR) AT2G17520.1 (e_value=0.0) | Symbols: IRE1A, ATIRE1-2, IRE1-2 | Endoribonuclease/protein kinase IRE1-like | chr2:7617504-7620929 FORWARD LENGTH=841;; (*ITAG) Solyc04g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:63835558-63843020 transcript_region:SL2.40ch04:63835558..63843020- go_terms:GO:0006468,GO:0006397 functional_description:"Serine threonine-protein kinase (AHRD V1 *-*- Q16QF5_AEDAE); contains Interpro domain(s) IPR010513 Ribonuclease L "; GO:0006468,GO:0006397 NbS00005671g0001.1 protein AED:0.28 eAED:0.33 QI:0|0.28|0.5|0.87|1|1|8|292|338; (*GB) gi|224089513|ref|XP_002308740.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT5G59810.1 (e_value=8e-13) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc06g061030.2.1 (e_value=7e-39) genomic_reference:SL2.40ch06 gene_region:35458941-35463705 transcript_region:SL2.40ch06:35458941..35463705+ go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00005671g0003.1 protein AED:0.33 eAED:0.35 QI:0|0|0|0.5|1|1|2|0|66; (*ITAG) Solyc01g100100.2.1 (e_value=9e-14) genomic_reference:SL2.40ch01 gene_region:81945457-81946029 transcript_region:SL2.40ch01:81945457..81946029- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- B8M8P5_TALSN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00025661g0005.1 protein AED:0.25 eAED:0.27 QI:0|0.58|0.53|0.61|0.75|0.84|13|0|482; (*GB) gi|115469622|ref|NP_001058410.1| (e_value=0.0) Os06g0687800 [Oryza sativa Japonica Group];; (*SWP) sp|Q641Z6|EHD1_RAT (e_value=3e-121) EH domain-containing protein 1 OS=Rattus norvegicus GN=Ehd1 PE=1 SV=1;; (*TAIR) AT3G20290.2 (e_value=0.0) | Symbols: ATEHD1, EHD1 | EPS15 homology domain 1 | chr3:7075057-7078655 REVERSE LENGTH=545;; (*ITAG) Solyc10g006110.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:847004-852441 transcript_region:SL2.40ch10:847004..852441- go_terms:GO:0019904 functional_description:"EH-domain-containing protein 1 (AHRD V1 **** B6U193_MAIZE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0019904 NbS00045163g0002.1 protein AED:0.29 eAED:0.34 QI:0|0|0|1|0|0|2|0|141; (*GB) gi|225435076|ref|XP_002284421.1| (e_value=3e-22) PREDICTED: uncharacterized protein LOC100244942 [Vitis vinifera];; (*TAIR) AT2G28690.1 (e_value=8e-12) | Symbols: | Protein of unknown function (DUF1635) | chr2:12307140-12308477 REVERSE LENGTH=231; NbS00045163g0001.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|0|0|2|0|101; (*GB) gi|297746137|emb|CBI16193.3| (e_value=4e-14) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G28140.1 (e_value=1e-13) | Symbols: | Protein of unknown function (DUF1635) | chr2:11995091-11995808 FORWARD LENGTH=211; NbS00058980g0007.1 protein AED:0.03 eAED:0.05 QI:0|0.5|0|1|0.5|0.33|3|0|1056; (*GB) gi|53749484|gb|AAU90337.1| (e_value=0.0) Putative receptor kinase-like protein, identical [Solanum demissum];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc03g098400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:54171941-54175132 transcript_region:SL2.40ch03:54171941..54175132+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00058980g0008.1 protein AED:0.17 eAED:0.17 QI:501|1|1|1|0.5|0.4|5|0|414; (*GB) gi|53749487|gb|AAU90340.1| (e_value=0.0) hypothetical protein SDM1_56t00017 [Solanum demissum];; (*TAIR) AT1G73240.1 (e_value=5e-131) | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27542397-27544668 REVERSE LENGTH=519;; (*ITAG) Solyc03g098340.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:54128463-54131985 transcript_region:SL2.40ch03:54128463..54131985+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028829g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0.75|1|0.66|0.75|4|133|220; (*GB) gi|255582265|ref|XP_002531924.1| (e_value=7e-107) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G16610.2 (e_value=1e-93) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:5445068-5447945 REVERSE LENGTH=673;; (*ITAG) Solyc11g011060.1.1 (e_value=4e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4138997-4144532 transcript_region:SL2.40ch11:4138997..4144532- functional_description:"AT5g16610/MTG13_5 (Fragment) (AHRD V1 **-- Q570B5_ARATH)"; NbC26177985g0004.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0.5|2|613|161; (*GB) gi|225437975|ref|XP_002272086.1| (e_value=1e-66) PREDICTED: uncharacterized protein LOC100265138 isoform 1 [Vitis vinifera];; (*TAIR) AT2G20390.1 (e_value=5e-50) | Symbols: | unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8796475-8798142 REVERSE LENGTH=183;; (*ITAG) Solyc04g011530.2.1 (e_value=8e-78) genomic_reference:SL2.40ch04 gene_region:3961600-3968559 transcript_region:SL2.40ch04:3961600..3968559+ functional_description:"Os04g0129600 protein (Fragment) (AHRD V1 ***- Q0JF81_ORYSJ)"; NbS00031696g0010.1 protein AED:0.03 eAED:0.03 QI:0|1|0.33|1|0|0|3|0|265; (*GB) gi|219560134|gb|ACL27275.1| (e_value=1e-62) homeodomain leucine-zipper 1 [Capsicum annuum];; (*SWP) sp|P46604|HAT22_ARATH (e_value=1e-56) Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1;; (*TAIR) AT4G37790.1 (e_value=9e-58) | Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278;; (*ITAG) Solyc04g077220.2.1 (e_value=7e-90) genomic_reference:SL2.40ch04 gene_region:59741973-59743801 transcript_region:SL2.40ch04:59741973..59743801- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein 22 (AHRD V1 ***- D7MA03_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0005634,GO:0006355,GO:0045449 NbS00000034g0001.1 protein AED:0.34 eAED:0.36 QI:0|0|0|0.5|1|1|2|0|305; (*GB) gi|225456592|ref|XP_002265769.1| (e_value=3e-17) PREDICTED: uncharacterized protein LOC100265622 [Vitis vinifera];; (*SWP) sp|Q9LMX5|AFP2_ARATH (e_value=2e-16) Ninja-family protein AFP2 OS=Arabidopsis thaliana GN=AFP2 PE=1 SV=1;; (*TAIR) AT1G13740.1 (e_value=1e-17) | Symbols: AFP2 | ABI five binding protein 2 | chr1:4713969-4715158 FORWARD LENGTH=348;; (*ITAG) Solyc02g032140.1.1 (e_value=2e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:18346432-18346881 transcript_region:SL2.40ch02:18346432..18346881+ functional_description:"Ninja-family protein Os03g0214200 (AHRD V1 *-*- NNJA1_ORYSJ); contains Interpro domain(s) IPR012463 Protein of unknown function DUF1675 "; NbS00024490g0010.1 protein AED:0.09 eAED:0.09 QI:203|1|1|1|0.75|0.6|5|330|396; (*GB) gi|225426358|ref|XP_002270995.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100254757 [Vitis vinifera];; (*TAIR) AT1G64385.1 (e_value=2e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:23900309-23901956 FORWARD LENGTH=351;; (*ITAG) Solyc08g082230.2.1 (e_value=5e-67) genomic_reference:SL2.40ch08 gene_region:62241419-62242676 transcript_region:SL2.40ch08:62241419..62242676+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041062g0006.1 protein AED:0.05 eAED:0.05 QI:96|0.85|0.62|1|0.85|0.75|8|0|410; (*GB) gi|225427324|ref|XP_002282232.1| (e_value=0.0) PREDICTED: ribose-phosphate pyrophosphokinase 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q42583|KPRS2_ARATH (e_value=0.0) Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2;; (*TAIR) AT1G32380.1 (e_value=0.0) | Symbols: PRS2 | phosphoribosyl pyrophosphate (PRPP) synthase 2 | chr1:11682033-11684229 FORWARD LENGTH=400;; (*ITAG) Solyc08g077200.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00041062g0009.1 protein AED:0.04 eAED:0.04 QI:0|0.6|0.5|1|0.6|0.5|6|0|480; (*GB) gi|147794999|emb|CAN71929.1| (e_value=2e-144) hypothetical protein VITISV_001044 [Vitis vinifera];; (*SWP) sp|Q6LA43|APRR2_ARATH (e_value=2e-72) Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2;; (*TAIR) AT4G18020.6 (e_value=2e-73) | Symbols: APRR2 | CheY-like two-component responsive regulator family protein | chr4:10003738-10006682 REVERSE LENGTH=535;; (*ITAG) Solyc06g061030.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:35458941-35463705 transcript_region:SL2.40ch06:35458941..35463705+ go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbC25573744g0001.1 protein AED:0.17 eAED:0.17 QI:0|1|0|1|1|1|2|0|81; (*GB) gi|350535158|ref|NP_001234435.1| (e_value=6e-35) plantacyanin precursor [Solanum lycopersicum];; (*SWP) sp|P60496|BABL_LILLO (e_value=2e-25) Chemocyanin OS=Lilium longiflorum PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=5e-22) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104390.1.1 (e_value=8e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84533973-84534423 transcript_region:SL2.40ch01:84533973..84534423+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6TT37_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00057875g0005.1 protein AED:0.15 eAED:0.16 QI:229|0.71|0.73|1|0.5|0.73|15|213|583; (*GB) gi|224136770|ref|XP_002322411.1| (e_value=1e-143) predicted protein [Populus trichocarpa];; (*TAIR) AT4G25290.1 (e_value=2e-119) | Symbols: | DNA photolyases;DNA photolyases | chr4:12941486-12944994 REVERSE LENGTH=692; NbS00007519g0001.1 protein AED:0.16 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|928; (*GB) gi|126843180|gb|ABO27628.1| (e_value=0.0) BRI1 protein [Nicotiana benthamiana];; (*SWP) sp|Q8L899|BRI1_SOLPE (e_value=0.0) Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1;; (*TAIR) AT4G39400.1 (e_value=0.0) | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine-rich receptor-like protein kinase family protein | chr4:18324826-18328416 FORWARD LENGTH=1196;; (*ITAG) Solyc04g051510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49870634-49874257 transcript_region:SL2.40ch04:49870634..49874257+ go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbS00007519g0002.1 protein AED:0.38 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|332; (*GB) gi|126843180|gb|ABO27628.1| (e_value=0.0) BRI1 protein [Nicotiana benthamiana];; (*SWP) sp|Q8L899|BRI1_SOLPE (e_value=0.0) Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1;; (*TAIR) AT4G39400.1 (e_value=2e-169) | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine-rich receptor-like protein kinase family protein | chr4:18324826-18328416 FORWARD LENGTH=1196;; (*ITAG) Solyc04g051510.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49870634-49874257 transcript_region:SL2.40ch04:49870634..49874257+ go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbS00009517g0006.1 protein AED:0.15 eAED:0.15 QI:489|0.71|0.62|1|0.71|0.62|8|488|615; (*GB) gi|225442799|ref|XP_002285259.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242968 [Vitis vinifera];; (*TAIR) AT1G80280.1 (e_value=0.0) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:30183839-30186141 REVERSE LENGTH=647;; (*ITAG) Solyc06g067890.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38469559-38475823 transcript_region:SL2.40ch06:38469559..38475823+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7KX74_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00034778g0005.1 protein AED:0.17 eAED:0.17 QI:381|0.9|0.90|1|0.4|0.54|11|261|667; (*GB) gi|359489011|ref|XP_002278752.2| (e_value=0.0) PREDICTED: uncharacterized membrane protein YLR241W-like [Vitis vinifera];; (*SWP) sp|Q06538|YL241_YEAST (e_value=8e-20) Uncharacterized membrane protein YLR241W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR241W PE=1 SV=1;; (*TAIR) AT3G01100.1 (e_value=0.0) | Symbols: HYP1, ATHYP1 | hypothetical protein 1 | chr3:35013-38176 REVERSE LENGTH=703;; (*ITAG) Solyc02g088300.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:45016695-45024991 transcript_region:SL2.40ch02:45016695..45024991+ go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00026016g0001.1 protein AED:0.08 eAED:0.08 QI:263|0.57|0.5|1|1|1|8|0|771; (*GB) gi|225432654|ref|XP_002278361.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase WNK1-like [Vitis vinifera];; (*SWP) sp|Q9CAV6|WNK1_ARATH (e_value=0.0) Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1;; (*TAIR) AT3G04910.1 (e_value=0.0) | Symbols: WNK1, ZIK4, ATWNK1 | with no lysine (K) kinase 1 | chr3:1355084-1358057 FORWARD LENGTH=700;; (*ITAG) Solyc09g076000.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:63183204-63186781 transcript_region:SL2.40ch09:63183204..63186781+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00030796g0002.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|259; (*GB) gi|302398643|gb|ADL36616.1| (e_value=3e-48) BZIP domain class transcription factor [Malus x domestica];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=1e-18) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT1G75390.1 (e_value=2e-39) | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper 44 | chr1:28292224-28292745 FORWARD LENGTH=173;; (*ITAG) Solyc04g080740.1.1 (e_value=9e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62438744-62439187 transcript_region:SL2.40ch04:62438744..62439187+ go_terms:GO:0046982 functional_description:"BZIP transcription factor family protein (AHRD V1 **-- D7KSN7_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0046982 NbS00038320g0001.1 protein AED:0.26 eAED:0.26 QI:0|-1|0|1|-1|1|1|0|166; (*GB) gi|225462524|ref|XP_002265932.1| (e_value=2e-57) PREDICTED: auxin-induced protein 6B-like [Vitis vinifera];; (*SWP) sp|P33083|AX6B_SOYBN (e_value=2e-15) Auxin-induced protein 6B OS=Glycine max PE=2 SV=1;; (*TAIR) AT3G43120.1 (e_value=7e-23) | Symbols: | SAUR-like auxin-responsive protein family | chr3:15094644-15095312 FORWARD LENGTH=160;; (*ITAG) Solyc05g046320.1.1 (e_value=3e-74) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:57696745-57697263 transcript_region:SL2.40ch05:57696745..57697263- go_terms:GO:0005516 functional_description:"Auxin-induced SAUR-like protein (AHRD V1 *--- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; GO:0005516 NbS00036417g0002.1 protein AED:0.47 eAED:0.47 QI:0|0|0|0.33|1|1|3|0|284; (*ITAG) Solyc10g049530.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:41552270-41555076 transcript_region:SL2.40ch10:41552270..41555076+ go_terms:GO:0006313 functional_description:"Transposase (Fragment) (AHRD V1 *-*- Q6USB0_9ASPA); contains Interpro domain(s) IPR002559 Transposase, IS4-like "; GO:0006313 NbS00008846g0004.1 protein AED:0.14 eAED:0.15 QI:0|1|0.87|1|1|1|8|0|520; (*GB) gi|359495207|ref|XP_002263508.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera];; (*SWP) sp|P73530|RS1A_SYNY3 (e_value=1e-29) 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rps1A PE=3 SV=1;; (*TAIR) AT1G71720.1 (e_value=7e-174) | Symbols: | Nucleic acid-binding proteins superfamily | chr1:26983744-26985893 FORWARD LENGTH=500;; (*ITAG) Solyc00g009100.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:8793413-8800152 transcript_region:SL2.40ch00:8793413..8800152- go_terms:GO:0003723 functional_description:"30S ribosomal protein S1-like (AHRD V1 ***- Q5ZC75_ORYSJ); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00029507g0007.1 protein AED:0.21 eAED:0.21 QI:543|0.75|0.8|1|0.5|0.4|5|313|409; (*ITAG) Solyc06g076490.2.1 (e_value=2e-98) genomic_reference:SL2.40ch06 gene_region:43912113-43917265 transcript_region:SL2.40ch06:43912113..43917265+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029507g0010.1 protein AED:0.33 eAED:0.30 QI:149|0.75|0.6|1|1|0.8|5|0|177; (*GB) gi|224106371|ref|XP_002314144.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT5G02020.1 (e_value=2e-20) | Symbols: SIS | Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). | chr5:386557-387921 REVERSE LENGTH=149;; (*ITAG) Solyc06g076470.2.1 (e_value=3e-71) genomic_reference:SL2.40ch06 gene_region:43901381-43904096 transcript_region:SL2.40ch06:43901381..43904096+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019477g0001.1 protein AED:0.34 eAED:0.34 QI:0|0|0|1|1|1|3|0|214; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=7e-104) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=1e-71) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=9e-73) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=4e-69) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00019477g0015.1 protein AED:0.21 eAED:0.62 QI:0|0|0|0.62|0|0|8|0|398; (*GB) gi|1304247|dbj|BAA12352.1| (e_value=5e-74) ABC-type heme transporter subunit [Solanum lycopersicum];; (*SWP) sp|P93280|CCMB_ARATH (e_value=1e-57) Putative cytochrome c biogenesis ccmB-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMB PE=2 SV=2;; (*ITAG) ATMG00110.1 (e_value=4e-73) | Symbols: CCB206 | cytochrome C biogenesis 206 | chrM:30463-31083 FORWARD LENGTH=206;; (*ITAG) Solyc00g020040.1.1 (e_value=1e-76) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:11809684-11810304 transcript_region:SL2.40ch00:11809684..11810304+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis (Fragment) (AHRD V1 ***- A4KXV6_9ROSI); contains Interpro domain(s) IPR003544 Cytochrome c-type biogenesis protein CcmB "; GO:0016020 NbS00019477g0014.1 protein AED:0.12 eAED:0.56 QI:0|0|0|1|0|0|3|0|158; (*GB) gi|57014011|ref|YP_173482.1| (e_value=2e-41) hypothetical protein NitaMp145 [Nicotiana tabacum]; NbS00019477g0101.1 protein AED:0.01 eAED:0.01 QI:0|1|0.33|1|1|1|3|0|598 NbS00019477g0109.1 protein AED:0.16 eAED:0.16 QI:0|0|0|0.66|0|0.33|3|0|630 NbS00019477g0104.1 protein AED:0.24 eAED:0.25 QI:0|0|0|1|1|1|2|0|76 NbS00001670g0010.1 protein AED:0.14 eAED:0.16 QI:314|0.66|0.75|1|1|1|4|308|445; (*GB) gi|356528463|ref|XP_003532822.1| (e_value=1e-173) PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like [Glycine max];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=5e-36) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT5G64970.1 (e_value=2e-164) | Symbols: | Mitochondrial substrate carrier family protein | chr5:25958806-25960443 REVERSE LENGTH=428;; (*ITAG) Solyc04g056260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:53064095-53069836 transcript_region:SL2.40ch04:53064095..53069836+ go_terms:GO:0030233 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10QM8_ORYSJ); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0030233 NbS00001670g0009.1 protein AED:0.19 eAED:0.19 QI:0|0.9|0.81|1|0.9|1|11|315|1094; (*GB) gi|301030829|gb|ADK47999.1| (e_value=0.0) calmodulin-binding protein [Solanum lycopersicum];; (*SWP) sp|Q6NPP4|CMTA2_ARATH (e_value=0.0) Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1;; (*TAIR) AT5G64220.2 (e_value=0.0) | Symbols: | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr5:25686434-25691903 FORWARD LENGTH=1050;; (*ITAG) Solyc04g056270.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:53071198-53081628 transcript_region:SL2.40ch04:53071198..53081628- go_terms:GO:0016563 functional_description:"Calmodulin-binding transcription activator 3 (AHRD V1 *--* Q0WW70_ARATH); contains Interpro domain(s) IPR005559 CG-1 "; GO:0016563 NbS00041459g0004.1 protein AED:0.24 eAED:0.24 QI:236|0.75|0.6|1|1|1|5|0|630; (*GB) gi|255587028|ref|XP_002534105.1| (e_value=0.0) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=0.0) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=0.0) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc11g066040.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48796501-48803987 transcript_region:SL2.40ch11:48796501..48803987+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00041459g0005.1 protein AED:0.36 eAED:0.50 QI:0|0|0|1|1|1|2|0|99; (*ITAG) Solyc01g017760.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041459g0018.1 protein AED:0.51 eAED:0.52 QI:0|0|0|0.5|0|0.5|2|0|87; (*ITAG) Solyc04g074620.1.1 (e_value=1e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00041459g0015.1 protein AED:0.19 eAED:0.20 QI:24|1|0.5|1|0|0|2|0|280; (*GB) gi|7688355|emb|CAB89831.1| (e_value=1e-71) Dof zinc finger protein [Solanum tuberosum];; (*SWP) sp|Q9M2U1|DOF36_ARATH (e_value=5e-41) Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2;; (*TAIR) AT3G55370.1 (e_value=4e-42) | Symbols: OBP3 | OBF-binding protein 3 | chr3:20527198-20528876 FORWARD LENGTH=323;; (*ITAG) Solyc11g066050.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48809723-48810871 transcript_region:SL2.40ch11:48809723..48810871- go_terms:GO:0045449 functional_description:"Dof zinc finger protein (AHRD V1 ***- Q9M4G1_SOLTU); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0045449 NbC24780089g0002.1 protein AED:0.10 eAED:0.12 QI:9|-1|0|1|-1|1|1|0|159; (*GB) gi|389607301|dbj|BAM17521.1| (e_value=3e-74) N' tobamovirus resistance protein [Nicotiana sylvestris];; (*ITAG) Solyc08g007630.1.1 (e_value=9e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2161135-2164101 transcript_region:SL2.40ch08:2161135..2164101+ go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00049444g0005.1 protein AED:0.42 eAED:0.42 QI:42|0.25|0.4|0.4|0.5|0.8|5|165|136; (*GB) gi|147854211|emb|CAN83437.1| (e_value=8e-47) hypothetical protein VITISV_000073 [Vitis vinifera];; (*SWP) sp|Q8RXN4|HIBC5_ARATH (e_value=2e-24) 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1;; (*TAIR) AT4G31810.1 (e_value=2e-25) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr4:15387365-15390290 REVERSE LENGTH=409;; (*ITAG) Solyc01g090700.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00022502g0014.1 protein AED:0.05 eAED:0.05 QI:70|0.8|0.66|1|0.6|0.66|6|50|522; (*GB) gi|225436134|ref|XP_002279322.1| (e_value=4e-115) PREDICTED: aluminum-activated malate transporter 2 [Vitis vinifera];; (*SWP) sp|Q9SRM9|ALMT8_ARATH (e_value=1e-94) Aluminum-activated malate transporter 8 OS=Arabidopsis thaliana GN=ALMT8 PE=3 SV=1;; (*TAIR) AT3G11680.1 (e_value=8e-96) | Symbols: | Aluminium activated malate transporter family protein | chr3:3686995-3689329 REVERSE LENGTH=488;; (*ITAG) Solyc01g007080.2.1 (e_value=3e-170) genomic_reference:SL2.40ch01 gene_region:1629115-1634158 transcript_region:SL2.40ch01:1629115..1634158- go_terms:GO:0015140 functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--* Q071L4_AVESA); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; GO:0015140 NbS00022502g0013.1 protein AED:0.25 eAED:0.25 QI:114|0.83|0.85|1|1|1|7|208|730; (*GB) gi|225439442|ref|XP_002264659.1| (e_value=0.0) PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q6DW76|DGDG1_SOYBN (e_value=0.0) Digalactosyldiacylglycerol synthase 1, chloroplastic OS=Glycine max GN=DGD1 PE=2 SV=1;; (*TAIR) AT3G11670.1 (e_value=0.0) | Symbols: DGD1 | UDP-Glycosyltransferase superfamily protein | chr3:3681090-3684495 REVERSE LENGTH=808;; (*ITAG) Solyc01g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1654055-1658743 transcript_region:SL2.40ch01:1654055..1658743- go_terms:GO:0035250,GO:0046480 functional_description:"Digalactosyldiacylglycerol synthase 1, chloroplastic (AHRD V1 ***- DGDG1_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250,GO:0046480 NbS00005438g0001.1 protein AED:0.07 eAED:0.14 QI:12|0|0|1|0|0|5|0|534; (*ITAG) Solyc03g119890.2.1 (e_value=7e-173) genomic_reference:SL2.40ch03 gene_region:62479105-62481531 transcript_region:SL2.40ch03:62479105..62481531+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021127g0014.1 protein AED:0.16 eAED:0.16 QI:242|0.81|0.70|1|0.75|0.76|17|420|784; (*GB) gi|255560179|ref|XP_002521107.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5ZI67|NHLC2_CHICK (e_value=4e-13) NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2 SV=1;; (*TAIR) AT3G07060.1 (e_value=4e-172) | Symbols: emb1974 | NHL domain-containing protein | chr3:2232760-2236913 FORWARD LENGTH=774;; (*ITAG) Solyc09g061380.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:54567185-54585411 transcript_region:SL2.40ch09:54567185..54585411- functional_description:"NHL repeat (AHRD V1 *-*- Q3M6W0_ANAVT); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; NbS00021127g0013.1 protein AED:0.28 eAED:0.28 QI:0|0|0|1|0|0|3|0|131; (*ITAG) Solyc12g039050.1.1 (e_value=1e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00034208g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|340; (*GB) gi|359473051|ref|XP_003631238.1| (e_value=2e-161) PREDICTED: uncharacterized protein LOC100854077 [Vitis vinifera];; (*TAIR) AT2G35150.1 (e_value=3e-131) | Symbols: EXL1 | EXORDIUM like 1 | chr2:14817220-14818191 REVERSE LENGTH=323;; (*ITAG) Solyc10g074540.1.1 (e_value=4e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57429414-57430448 transcript_region:SL2.40ch10:57429414..57430448- functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VJP3_POPTN); contains Interpro domain(s) IPR006766 Phosphate-induced protein 1 conserved region "; NbS00034208g0011.1 protein AED:0.01 eAED:0.01 QI:2580|1|1|1|1|0.66|3|183|314; (*GB) gi|255578886|ref|XP_002530297.1| (e_value=5e-117) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=3e-77) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47090.1 (e_value=2e-79) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17341512-17344645 REVERSE LENGTH=1009;; (*ITAG) Solyc06g006020.1.1 (e_value=5e-162) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1036961-1040075 transcript_region:SL2.40ch06:1036961..1040075- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00034208g0008.1 protein AED:0.21 eAED:0.27 QI:0|0|0|1|0|0|4|0|565; (*GB) gi|359485451|ref|XP_002276944.2| (e_value=2e-98) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|Q9SHI2|Y1723_ARATH (e_value=3e-72) Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2;; (*TAIR) AT1G17230.1 (e_value=2e-73) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr1:5891375-5894855 FORWARD LENGTH=1101;; (*ITAG) Solyc06g006040.1.1 (e_value=2e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00034208g0007.1 protein AED:0.35 eAED:0.38 QI:0|0|0|1|0|0|3|0|303; (*GB) gi|224139658|ref|XP_002323215.1| (e_value=2e-89) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=1e-54) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=8e-56) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g068830.1.1 (e_value=4e-145) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:33321008-33323344 transcript_region:SL2.40ch02:33321008..33323344- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00008434g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.5|1|0|0|2|1004|367; (*GB) gi|359488297|ref|XP_003633738.1| (e_value=7e-139) PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q3ECH5|PP107_ARATH (e_value=3e-106) Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=1 SV=1;; (*TAIR) AT1G66345.1 (e_value=2e-107) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:24737719-24739353 FORWARD LENGTH=544;; (*ITAG) Solyc05g051340.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60759277-60760935 transcript_region:SL2.40ch05:60759277..60760935+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KTN3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008434g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.6|0.5|0.83|0.4|0.5|6|0|354; (*GB) gi|225462157|ref|XP_002266274.1| (e_value=4e-164) PREDICTED: post-GPI attachment to proteins factor 3 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9P6N9|PER1_SCHPO (e_value=2e-47) Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC823.07 PE=2 SV=1;; (*TAIR) AT1G16560.3 (e_value=4e-140) | Symbols: | Per1-like family protein | chr1:5668945-5670343 FORWARD LENGTH=342;; (*ITAG) Solyc05g051320.1.1 (e_value=2e-173) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60749337-60751829 transcript_region:SL2.40ch05:60749337..60751829+ go_terms:GO:0016788 functional_description:"Post-GPI attachment to proteins factor 3 (AHRD V1 **-- PGAP3_MOUSE); contains Interpro domain(s) IPR007217 Per1-like "; GO:0016788 NbS00008434g0001.1 protein AED:0.12 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|390; (*GB) gi|20257428|gb|AAM15884.1|AF492566_1 (e_value=3e-85) GIA/RGA-like gibberellin response modulator [Dubautia menziesii];; (*SWP) sp|Q7Y1B6|GAI_SOLLC (e_value=3e-86) DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1;; (*TAIR) AT2G01570.1 (e_value=1e-72) | Symbols: RGA1, RGA | GRAS family transcription factor family protein | chr2:255581-257344 REVERSE LENGTH=587;; (*ITAG) Solyc11g011260.1.1 (e_value=2e-87) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00021499g0002.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.33|1|1|3|0|110; (*GB) gi|3047057|gb|AAC83146.1| (e_value=4e-28) 1-aminocyclopropane-1-carboxylate synthase [Nicotiana glutinosa];; (*SWP) sp|Q07262|1A1C_TOBAC (e_value=1e-26) 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1;; (*TAIR) AT3G61510.1 (e_value=7e-19) | Symbols: ACS1, AT-ACS1 | ACC synthase 1 | chr3:22763495-22765730 REVERSE LENGTH=488;; (*ITAG) Solyc01g095080.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:78214067-78216996 transcript_region:SL2.40ch01:78214067..78216996- go_terms:GO:0042803,GO:0016847 functional_description:"1-aminocyclopropane-1-carboxylate synthase (AHRD V1 **** O65209_NICGU); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site "; GO:0042803,GO:0016847 NbS00058334g0004.1 protein AED:0.15 eAED:0.15 QI:66|0.5|0.42|0.71|0.83|0.71|7|270|288; (*GB) gi|255558037|ref|XP_002520047.1| (e_value=8e-116) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT4G17720.1 (e_value=4e-103) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:9862660-9864498 REVERSE LENGTH=313;; (*ITAG) Solyc03g097110.2.1 (e_value=1e-125) genomic_reference:SL2.40ch03 gene_region:52892623-52898264 transcript_region:SL2.40ch03:52892623..52898264- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbS00036631g0006.1 protein AED:0.13 eAED:0.13 QI:801|0.5|0.44|1|0.37|0.44|9|0|569; (*GB) gi|224078778|ref|XP_002305625.1| (e_value=2e-174) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXB4|Y1130_ARATH (e_value=3e-147) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1;; (*TAIR) AT1G11300.1 (e_value=1e-141) | Symbols: | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding | chr1:3794389-3800719 FORWARD LENGTH=1650;; (*ITAG) Solyc02g079540.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:38647401-38650439 transcript_region:SL2.40ch02:38647401..38650439+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00005464g0008.1 protein AED:0.09 eAED:0.09 QI:0|0|0|0.5|1|1|2|0|160; (*GB) gi|356544171|ref|XP_003540528.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100783695 [Glycine max];; (*TAIR) AT1G07985.1 (e_value=6e-21) | Symbols: | Expressed protein | chr1:2475508-2475942 FORWARD LENGTH=144;; (*ITAG) Solyc01g087180.2.1 (e_value=2e-69) genomic_reference:SL2.40ch01 gene_region:73880157-73881845 transcript_region:SL2.40ch01:73880157..73881845- functional_description:"Unknown Protein (AHRD V1)"; NbS00005464g0014.1 protein AED:0.15 eAED:0.15 QI:0|0.5|0|1|0.5|0.33|3|0|649; (*GB) gi|356600306|gb|AET22504.1| (e_value=5e-97) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=6e-66) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT1G50180.1 (e_value=3e-58) | Symbols: | NB-ARC domain-containing disease resistance protein | chr1:18584235-18587136 FORWARD LENGTH=857;; (*ITAG) Solyc01g087200.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73888976-73892212 transcript_region:SL2.40ch01:73888976..73892212- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00005464g0015.1 protein AED:0.17 eAED:0.17 QI:675|0.93|0.93|1|0.86|0.75|16|461|1051; (*GB) gi|33186651|gb|AAP97495.1| (e_value=0.0) cellulose synthase [Solanum tuberosum];; (*SWP) sp|Q941L0|CESA3_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2;; (*TAIR) AT5G05170.1 (e_value=0.0) | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065;; (*ITAG) Solyc01g087210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:73892563-73901116 transcript_region:SL2.40ch01:73892563..73901116- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6XP46_SOLTU); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00005464g0009.1 protein AED:0.33 eAED:0.33 QI:0|1|1|1|0.75|1|5|418|218; (*GB) gi|224055015|ref|XP_002298402.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19855.1 (e_value=3e-51) | Symbols: | Chaperonin-like RbcX protein | chr5:6712166-6713445 REVERSE LENGTH=203;; (*ITAG) Solyc01g087190.2.1 (e_value=3e-120) genomic_reference:SL2.40ch01 gene_region:73882628-73887074 transcript_region:SL2.40ch01:73882628..73887074- functional_description:"Chaperonin-like protein (AHRD V1 *-*- Q2LJI6_9NOSO); contains Interpro domain(s) IPR003435 Chaperonin-like RbcX "; NbS00005464g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|0.5|1|1|2|0|276; (*GB) gi|356600304|gb|AET22503.1| (e_value=4e-29) hypothetical protein [Solanum lycopersicum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=1e-16) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*ITAG) Solyc01g087200.2.1 (e_value=5e-136) genomic_reference:SL2.40ch01 gene_region:73888976-73892212 transcript_region:SL2.40ch01:73888976..73892212- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00007395g0002.1 protein AED:0.22 eAED:0.22 QI:461|0.5|0.33|1|1|1|3|0|93; (*GB) gi|297738451|emb|CBI27652.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G67370.1 (e_value=1e-26) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=6e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00062209g0001.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0.25|1|1|1|4|0|287; (*GB) gi|388501746|gb|AFK38939.1| (e_value=2e-77) unknown [Lotus japonicus];; (*SWP) sp|Q7XBH4|MYB4_ORYSJ (e_value=8e-71) Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2;; (*TAIR) AT3G23250.1 (e_value=4e-73) | Symbols: MYB15, ATY19, ATMYB15 | myb domain protein 15 | chr3:8309492-8310624 FORWARD LENGTH=285;; (*ITAG) Solyc05g055030.1.1 (e_value=2e-104) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:63949290-63951195 transcript_region:SL2.40ch05:63949290..63951195- go_terms:GO:0003700 functional_description:"Myb-related transcription factor (AHRD V1 **-* B5RHV2_MUSBA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00044552g0006.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|564; (*GB) gi|167460236|gb|ABZ80830.1| (e_value=0.0) CYP86A33 fatty acid omega-hydroxylase [Solanum tuberosum];; (*SWP) sp|P48422|C86A1_ARATH (e_value=0.0) Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1 PE=1 SV=2;; (*TAIR) AT5G58860.1 (e_value=0.0) | Symbols: CYP86A1, CYP86 | cytochrome P450, family 86, subfamily A, polypeptide 1 | chr5:23765999-23767997 REVERSE LENGTH=513;; (*ITAG) Solyc06g076800.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:44095294-44097255 transcript_region:SL2.40ch06:44095294..44097255+ go_terms:GO:0019825,GO:0008393 functional_description:"Cytochrome P450"; GO:0019825,GO:0008393 NbS00044552g0001.1 protein AED:0.10 eAED:0.11 QI:0|0|0.5|1|0|0.5|2|210|372; (*GB) gi|225434650|ref|XP_002279930.1| (e_value=2e-155) PREDICTED: uncharacterized protein LOC100248366 isoform 1 [Vitis vinifera];; (*TAIR) AT2G29660.1 (e_value=6e-107) | Symbols: | zinc finger (C2H2 type) family protein | chr2:12679346-12680467 FORWARD LENGTH=373;; (*ITAG) Solyc06g076820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44108043-44109185 transcript_region:SL2.40ch06:44108043..44109185+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00011016g0001.1 protein AED:0.26 eAED:0.26 QI:0|1|1|1|1|1|3|345|167; (*GB) gi|357476213|ref|XP_003608392.1| (e_value=2e-86) Isochorismatase family protein pncA, putative [Medicago truncatula];; (*TAIR) AT2G22570.2 (e_value=5e-66) | Symbols: ATNIC1, NIC1 | nicotinamidase 1 | chr2:9590021-9590846 REVERSE LENGTH=175;; (*ITAG) Solyc01g106000.2.1 (e_value=6e-98) genomic_reference:SL2.40ch01 gene_region:85753870-85755546 transcript_region:SL2.40ch01:85753870..85755546- go_terms:GO:0008936 functional_description:"Isochorismatase hydrolase (AHRD V1 ***- B6TNR9_MAIZE); contains Interpro domain(s) IPR000868 Isochorismatase-like "; GO:0008936 NbS00011016g0002.1 protein AED:0.16 eAED:0.16 QI:0|1|0.90|1|1|1|11|0|696; (*GB) gi|225464089|ref|XP_002271011.1| (e_value=0.0) PREDICTED: protein EXECUTER 1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=0.0) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1;; (*TAIR) AT4G33630.2 (e_value=0.0) | Symbols: EX1 | Protein of unknown function (DUF3506) | chr4:16155560-16159094 FORWARD LENGTH=684;; (*ITAG) Solyc01g105990.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85744268-85753629 transcript_region:SL2.40ch01:85744268..85753629+ functional_description:"Os01g0107900 protein (Fragment) (AHRD V1 *-*- Q0JRC9_ORYSJ)"; NbS00011016g0004.1 protein AED:0.85 eAED:1.00 QI:0|0|0|0.5|1|1|2|0|72 NbS00034661g0001.1 protein AED:0.13 eAED:0.13 QI:0|1|0.6|1|1|1|5|0|666; (*GB) gi|255555301|ref|XP_002518687.1| (e_value=0.0) d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|O04130|SERA_ARATH (e_value=0.0) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=0.0) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc03g112070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56655923-56660333 transcript_region:SL2.40ch03:56655923..56660333- go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00056941g0004.1 protein AED:0.17 eAED:0.18 QI:0|0.8|0.66|1|1|1|6|0|256; (*GB) gi|224054534|ref|XP_002298308.1| (e_value=7e-114) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9JJC8|NIPA2_MOUSE (e_value=9e-55) Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1;; (*TAIR) AT1G34470.1 (e_value=1e-91) | Symbols: | Protein of unknown function (DUF803) | chr1:12604574-12606758 FORWARD LENGTH=368;; (*ITAG) Solyc11g065090.1.1 (e_value=2e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47473695-47479479 transcript_region:SL2.40ch11:47473695..47479479+ go_terms:GO:0005665 functional_description:"DUF803 domain membrane protein (AHRD V1 **-- B8MZ64_ASPFN); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; GO:0005665 NbS00034471g0001.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|192; (*GB) gi|224099281|ref|XP_002311422.1| (e_value=4e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|P24068|OCS1_MAIZE (e_value=2e-13) Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2;; (*TAIR) AT3G30530.1 (e_value=3e-45) | Symbols: ATBZIP42, bZIP42 | basic leucine-zipper 42 | chr3:12139512-12140033 FORWARD LENGTH=173;; (*ITAG) Solyc04g005170.1.1 (e_value=1e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:118047-118622 transcript_region:SL2.40ch04:118047..118622- go_terms:GO:0046982,GO:0042803 functional_description:"BZip transcription factor (AHRD V1 ***- Q9AT29_PHAVU); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0046982,GO:0042803 NbS00009175g0006.1 protein AED:0.21 eAED:0.21 QI:395|0.94|1|1|0.52|0.61|18|498|452; (*GB) gi|350539447|ref|NP_001233882.1| (e_value=0.0) st3 protein [Solanum lycopersicum];; (*SWP) sp|P93051|ERDL7_ARATH (e_value=0.0) Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2;; (*TAIR) AT2G48020.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr2:19644441-19647007 FORWARD LENGTH=463;; (*ITAG) Solyc09g074230.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61501305-61505288 transcript_region:SL2.40ch09:61501305..61505288- go_terms:GO:0005536 functional_description:"Glucose transporter 8 (AHRD V1 **** Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005536 NbS00004101g0015.1 protein AED:0.05 eAED:0.09 QI:0|0.25|0.2|0.8|0.25|0.2|5|0|1095; (*GB) gi|225455244|ref|XP_002271388.1| (e_value=0.0) PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Vitis vinifera];; (*SWP) sp|P93194|RPK1_IPONI (e_value=0.0) Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2;; (*TAIR) AT5G63930.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:25583006-25586392 FORWARD LENGTH=1102;; (*ITAG) Solyc03g082470.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45939634-45943468 transcript_region:SL2.40ch03:45939634..45943468+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00004101g0013.1 protein AED:0.40 eAED:0.40 QI:13|0.75|0.8|1|0.5|0.6|5|225|168; (*GB) gi|225455248|ref|XP_002272754.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100257141 [Vitis vinifera];; (*TAIR) AT4G00850.1 (e_value=5e-28) | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:357675-358928 FORWARD LENGTH=223;; (*ITAG) Solyc03g082480.2.1 (e_value=1e-35) genomic_reference:SL2.40ch03 gene_region:45948144-45952630 transcript_region:SL2.40ch03:45948144..45952630+ functional_description:"SS18 protein (AHRD V1 *--- Q6FGL9_HUMAN); contains Interpro domain(s) IPR007726 SSXT "; NbS00004101g0014.1 protein AED:0.07 eAED:0.10 QI:298|0.76|0.64|1|0.61|0.57|14|0|823; (*GB) gi|359490825|ref|XP_002273000.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252015 [Vitis vinifera];; (*TAIR) AT5G53620.3 (e_value=9e-151) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). | chr5:21781217-21785061 FORWARD LENGTH=682;; (*ITAG) Solyc03g082490.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:45953860-45961711 transcript_region:SL2.40ch03:45953860..45961711- go_terms:GO:0016887 functional_description:"Genomic DNA chromosome 5 P1 clone MNC6 (AHRD V1 ***- Q9FJC2_ARATH)"; GO:0016887 NbS00047211g0004.1 protein AED:0.65 eAED:0.75 QI:0|0.25|0|0.4|1|1|5|0|139; (*GB) gi|225424246|ref|XP_002284469.1| (e_value=3e-59) PREDICTED: phytanoyl-CoA dioxygenase domain-containing protein 1 [Vitis vinifera];; (*SWP) sp|Q0IIB1|PHYD1_BOVIN (e_value=2e-27) Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Bos taurus GN=PHYHD1 PE=2 SV=1;; (*TAIR) AT2G01490.1 (e_value=9e-54) | Symbols: | phytanoyl-CoA dioxygenase (PhyH) family protein | chr2:221316-223187 FORWARD LENGTH=283;; (*ITAG) Solyc05g007970.2.1 (e_value=5e-78) genomic_reference:SL2.40ch05 gene_region:2390017-2393710 transcript_region:SL2.40ch05:2390017..2393710+ go_terms:GO:0005515 functional_description:"Phytanoyl-CoA dioxygenase (AHRD V1 ***- B6R8S2_9RHOB); contains Interpro domain(s) IPR008775 Phytanoyl-CoA dioxygenase "; GO:0005515 NbS00016151g0001.1 protein AED:0.15 eAED:0.15 QI:87|1|1|1|1|1|7|279|197; (*GB) gi|44717048|gb|AAN62015.2| (e_value=7e-100) leucine-rich repeat protein [Capsicum annuum];; (*SWP) sp|Q94AG2|SERK1_ARATH (e_value=7e-52) Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2;; (*TAIR) AT1G71830.1 (e_value=5e-53) | Symbols: SERK1, ATSERK1 | somatic embryogenesis receptor-like kinase 1 | chr1:27018575-27021842 FORWARD LENGTH=625;; (*ITAG) Solyc01g009810.2.1 (e_value=2e-103) genomic_reference:SL2.40ch01 gene_region:4251976-4255077 transcript_region:SL2.40ch01:4251976..4255077+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00016151g0007.1 protein AED:0.24 eAED:0.26 QI:174|0.9|0.81|1|0.7|0.90|11|0|640; (*GB) gi|296088724|emb|CBI38174.3| (e_value=5e-162) unnamed protein product [Vitis vinifera];; (*SWP) sp|O22799|Y2349_ARATH (e_value=9e-134) Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2;; (*TAIR) AT2G33490.1 (e_value=7e-135) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARD LENGTH=623;; (*ITAG) Solyc01g009820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:4260281-4266897 transcript_region:SL2.40ch01:4260281..4266897- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7LGA9_ARALY)"; NbS00009549g0004.1 protein AED:0.01 eAED:0.01 QI:438|1|1|1|1|1|4|237|428; (*GB) gi|225447705|ref|XP_002272846.1| (e_value=0.0) PREDICTED: 5' exonuclease Apollo [Vitis vinifera];; (*SWP) sp|B0V2S2|DCR1B_DANRE (e_value=1e-58) 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1;; (*TAIR) AT1G27410.1 (e_value=1e-158) | Symbols: | DNA repair metallo-beta-lactamase family protein | chr1:9517226-9518743 FORWARD LENGTH=422;; (*ITAG) Solyc07g053210.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58983740-58986826 transcript_region:SL2.40ch07:58983740..58986826+ functional_description:"DNA cross-link repair 1B-like protein (AHRD V1 ***- Q8LQQ4_ORYSJ); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00009549g0002.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|821; (*GB) gi|225447699|ref|XP_002277219.1| (e_value=0.0) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 isoform 1 [Vitis vinifera];; (*SWP) sp|O64477|Y2913_ARATH (e_value=0.0) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=0.0) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g053220.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00009549g0006.1 protein AED:0.21 eAED:0.39 QI:210|0|0.5|1|0|0|2|0|75 NbS00036938g0005.1 protein AED:0.32 eAED:0.32 QI:30|0.91|0.84|1|0.58|0.76|13|0|495; (*GB) gi|297736512|emb|CBI25383.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G05310.2 (e_value=0.0) | Symbols: | TLC ATP/ADP transporter | chr5:1571271-1574341 FORWARD LENGTH=496;; (*ITAG) Solyc06g050210.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:29171032-29184391 transcript_region:SL2.40ch06:29171032..29184391+ functional_description:"Major facilitator superfamily MFS_1 (AHRD V1 ***- B2IEC2_BEII9)"; NbC26052641g0001.1 protein AED:0.03 eAED:0.03 QI:0|0|0|0.5|1|1|2|0|305; (*GB) gi|356503710|ref|XP_003520648.1| (e_value=2e-23) PREDICTED: zinc finger protein JACKDAW-like [Glycine max];; (*ITAG) Solyc10g084180.1.1 (e_value=8e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63159261-63161247 transcript_region:SL2.40ch10:63159261..63161247- go_terms:GO:0005515,GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU4_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00029743g0006.1 protein AED:0.02 eAED:0.04 QI:122|1|0.8|1|1|1|5|0|803; (*GB) gi|225433189|ref|XP_002281630.1| (e_value=0.0) PREDICTED: kinesin-like protein KIF11-like [Vitis vinifera];; (*SWP) sp|P46874|KLP2_BOMMO (e_value=6e-36) Kinesin-like protein KLP2 (Fragment) OS=Bombyx mori PE=2 SV=1;; (*TAIR) AT4G14330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:8244228-8247286 FORWARD LENGTH=869;; (*ITAG) Solyc09g090320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65183225-65187280 transcript_region:SL2.40ch09:65183225..65187280- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 *-*- O23291_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00029743g0007.1 protein AED:0.21 eAED:0.22 QI:0|1|0.75|1|0.66|0.75|4|0|276; (*GB) gi|38679323|gb|AAR26483.1| (e_value=1e-159) harpin binding protein 1 [Nicotiana tabacum];; (*SWP) sp|Q9LW57|PAP6_ARATH (e_value=7e-92) Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1;; (*TAIR) AT3G23400.1 (e_value=5e-93) | Symbols: FIB4 | Plastid-lipid associated protein PAP / fibrillin family protein | chr3:8376636-8378225 REVERSE LENGTH=284;; (*ITAG) Solyc09g090330.2.1 (e_value=9e-149) genomic_reference:SL2.40ch09 gene_region:65188896-65193572 transcript_region:SL2.40ch09:65188896..65193572- go_terms:GO:0009507 functional_description:"Harpin binding protein 1 (AHRD V1 **-- Q5QJB4_SOLLC); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00020540g0006.1 protein AED:0.02 eAED:0.02 QI:0|0|0.5|1|1|1|2|113|1013; (*GB) gi|224097752|ref|XP_002311067.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=0.0) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=0.0) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc04g009040.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:2600952-2604337 transcript_region:SL2.40ch04:2600952..2604337- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00020540g0007.1 protein AED:0.20 eAED:0.20 QI:125|0.86|0.87|1|0.86|0.75|16|250|586; (*GB) gi|13173434|gb|AAK14408.1| (e_value=0.0) phosphoribosylaminoimidazole carboxylase [Nicotiana tabacum];; (*SWP) sp|P55195|PUR6_VIGAC (e_value=0.0) Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PURKE PE=2 SV=1;; (*TAIR) AT2G37690.1 (e_value=0.0) | Symbols: | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative | chr2:15806111-15810240 FORWARD LENGTH=642;; (*ITAG) Solyc11g006340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00003530g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|136; (*GB) gi|224079557|ref|XP_002305889.1| (e_value=3e-71) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24130.1 (e_value=3e-35) | Symbols: | Protein of unknown function, DUF538 | chr4:12527861-12528423 FORWARD LENGTH=157;; (*ITAG) Solyc02g076890.1.1 (e_value=9e-65) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:36583944-36584354 transcript_region:SL2.40ch02:36583944..36584354+ go_terms:GO:0005515 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00003530g0018.1 protein AED:0.12 eAED:0.12 QI:0|0|0.33|1|0.5|0.66|3|0|280; (*GB) gi|318136892|gb|ADV41672.1| (e_value=0.0) cysteine protease [Nicotiana tabacum];; (*SWP) sp|P43156|CYSP_HEMSP (e_value=6e-84) Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1;; (*TAIR) AT5G45890.1 (e_value=2e-105) | Symbols: SAG12 | senescence-associated gene 12 | chr5:18613300-18614759 FORWARD LENGTH=346;; (*ITAG) Solyc02g076910.2.1 (e_value=8e-170) genomic_reference:SL2.40ch02 gene_region:36596299-36598291 transcript_region:SL2.40ch02:36596299..36598291+ go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00003530g0017.1 protein AED:0.30 eAED:0.30 QI:0|1|0.90|1|0.5|0.45|11|283|453; (*GB) gi|359483524|ref|XP_002266564.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266871 [Vitis vinifera];; (*TAIR) AT1G29120.2 (e_value=5e-168) | Symbols: | Hydrolase-like protein family | chr1:10174481-10178143 FORWARD LENGTH=455;; (*ITAG) Solyc02g076870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36561133-36572505 transcript_region:SL2.40ch02:36561133..36572505+ functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00003530g0014.1 protein AED:0.10 eAED:0.10 QI:0|0|0|0.33|1|1|3|0|134; (*GB) gi|359483522|ref|XP_002273741.2| (e_value=1e-46) PREDICTED: uncharacterized protein LOC100266966 [Vitis vinifera];; (*TAIR) AT1G06330.1 (e_value=2e-29) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:1931671-1932266 REVERSE LENGTH=159;; (*ITAG) Solyc02g076880.2.1 (e_value=1e-62) genomic_reference:SL2.40ch02 gene_region:36572507-36575744 transcript_region:SL2.40ch02:36572507..36575744- go_terms:GO:0005507 functional_description:"Copper ion binding protein (AHRD V1 **-* B6T4F6_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0005507 NbS00003530g0003.1 protein AED:0.17 eAED:0.17 QI:221|1|1|1|0.5|0.33|3|248|127; (*GB) gi|297745307|emb|CBI40387.3| (e_value=9e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9UNI6|DUS12_HUMAN (e_value=3e-30) Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1;; (*TAIR) AT4G18593.1 (e_value=4e-61) | Symbols: | dual specificity protein phosphatase-related | chr4:10238154-10238698 FORWARD LENGTH=142;; (*ITAG) Solyc02g076900.2.1 (e_value=6e-81) genomic_reference:SL2.40ch02 gene_region:36589023-36592311 transcript_region:SL2.40ch02:36589023..36592311- functional_description:"Dual specificity protein phosphatase (AHRD V1 ***- Q2HSZ6_MEDTR)"; NbS00011038g0003.1 protein AED:0.29 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|243; (*GB) gi|296084481|emb|CBI25040.3| (e_value=1e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|A3CCP9|P2C76_ORYSJ (e_value=5e-43) Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586001 PE=3 SV=2;; (*TAIR) AT3G63320.1 (e_value=1e-33) | Symbols: | Protein phosphatase 2C family protein | chr3:23389838-23391556 REVERSE LENGTH=423;; (*ITAG) Solyc06g082700.1.1 (e_value=3e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44719763-44720191 transcript_region:SL2.40ch06:44719763..44720191+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B1B5N6_PHYPA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00011038g0001.1 protein AED:0.11 eAED:0.11 QI:0|0.9|0.72|1|0.9|0.81|11|843|942; (*GB) gi|359476851|ref|XP_002267434.2| (e_value=1e-87) PREDICTED: uncharacterized protein LOC100266115 [Vitis vinifera];; (*SWP) sp|Q99L90|MCRS1_MOUSE (e_value=1e-17) Microspherule protein 1 OS=Mus musculus GN=Mcrs1 PE=1 SV=1;; (*TAIR) AT3G54350.3 (e_value=2e-51) | Symbols: emb1967 | Forkhead-associated (FHA) domain-containing protein | chr3:20122298-20126031 REVERSE LENGTH=702;; (*ITAG) Solyc02g084620.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:42279768-42289234 transcript_region:SL2.40ch02:42279768..42289234- functional_description:"Microspherule protein 1 (AHRD V1 *-*- B0WC51_CULQU); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00011038g0015.1 protein AED:0.20 eAED:0.20 QI:123|0.83|0.85|1|1|1|7|174|234; (*GB) gi|8163950|gb|AAF73933.1|AF230704_1 (e_value=3e-140) MADS box transcription factor TM6 [Petunia x hybrida];; (*SWP) sp|P23706|DEFA_ANTMA (e_value=3e-87) Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1;; (*TAIR) AT3G54340.1 (e_value=3e-67) | Symbols: AP3, ATAP3 | K-box region and MADS-box transcription factor family protein | chr3:20119428-20121087 REVERSE LENGTH=232;; (*ITAG) Solyc02g084630.2.1 (e_value=9e-144) genomic_reference:SL2.40ch02 gene_region:42291414-42295184 transcript_region:SL2.40ch02:42291414..42295184- go_terms:GO:0003677 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q4LEZ4_ASPOF); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00011038g0013.1 protein AED:0.18 eAED:0.23 QI:0|0|0|1|0|0.33|3|0|803; (*GB) gi|224094905|ref|XP_002310286.1| (e_value=2e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FL28|FLS2_ARATH (e_value=2e-58) LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1;; (*TAIR) AT5G66330.1 (e_value=2e-132) | Symbols: | Leucine-rich repeat (LRR) family protein | chr5:26500531-26501787 REVERSE LENGTH=418;; (*ITAG) Solyc02g084610.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42274707-42275954 transcript_region:SL2.40ch02:42274707..42275954- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00000745g0001.1 protein AED:0.13 eAED:0.16 QI:0|0.6|0.5|1|1|1|6|0|999; (*GB) gi|224092282|ref|XP_002309542.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT2G25800.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF810) | chr2:11006138-11009728 REVERSE LENGTH=987;; (*ITAG) Solyc08g066600.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:52549459-52556364 transcript_region:SL2.40ch08:52549459..52556364- functional_description:"Homology to unknown gene (AHRD V1 **-- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00015686g0010.1 protein AED:0.14 eAED:0.21 QI:80|0.33|0|1|0.33|0.25|4|0|297; (*GB) gi|224124110|ref|XP_002330107.1| (e_value=2e-137) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFW3|COBL4_ARATH (e_value=4e-135) COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2;; (*TAIR) AT5G15630.1 (e_value=3e-136) | Symbols: COBL4, IRX6 | COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084842-5086545 FORWARD LENGTH=431;; (*ITAG) Solyc03g114900.2.1 (e_value=4e-148) genomic_reference:SL2.40ch03 gene_region:58826189-58828118 transcript_region:SL2.40ch03:58826189..58828118+ functional_description:"COBRA-like protein (AHRD V1 ***- B6E8Y8_9MYRT); contains Interpro domain(s) IPR017391 COBRA-like "; NbS00015686g0011.1 protein AED:0.01 eAED:0.03 QI:0|0|0|1|0|1|2|0|566; (*GB) gi|359491363|ref|XP_002265397.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g60960, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FME4|PP438_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g60960, mitochondrial OS=Arabidopsis thaliana GN=At5g60960 PE=2 SV=1;; (*TAIR) AT5G60960.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24528423-24529988 REVERSE LENGTH=521;; (*ITAG) Solyc03g114920.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58835298-58836866 transcript_region:SL2.40ch03:58835298..58836866- go_terms:GO:0016020 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MUF9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016020 NbS00015686g0009.1 protein AED:0.31 eAED:0.31 QI:0|0|0.5|1|0|0.5|2|120|330; (*GB) gi|225430641|ref|XP_002267590.1| (e_value=4e-43) PREDICTED: uncharacterized protein LOC100243390 [Vitis vinifera];; (*TAIR) AT5G41270.1 (e_value=8e-29) | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16507797-16508813 FORWARD LENGTH=258;; (*ITAG) Solyc08g081040.2.1 (e_value=1e-116) genomic_reference:SL2.40ch08 gene_region:61329962-61331992 transcript_region:SL2.40ch08:61329962..61331992+ functional_description:"Genomic DNA chromosome 5 TAC clone K1O13 (AHRD V1 *-*- Q9FHD6_ARATH); contains Interpro domain(s) IPR007175 RNAse P, Rpr2/Rpp21 subunit "; NbS00040223g0014.1 protein AED:0.27 eAED:0.27 QI:0|0|0|0.33|1|0.66|3|0|218 NbS00040223g0007.1 protein AED:0.27 eAED:0.29 QI:0|0.33|0.14|0.85|1|1|7|0|488; (*GB) gi|359484947|ref|XP_002265117.2| (e_value=0.0) PREDICTED: serine/threonine-protein kinase At5g01020-like [Vitis vinifera];; (*SWP) sp|Q8GXZ3|Y5102_ARATH (e_value=8e-121) Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1;; (*TAIR) AT2G07180.2 (e_value=5e-164) | Symbols: | Protein kinase superfamily protein | chr2:2981082-2983271 REVERSE LENGTH=442;; (*ITAG) Solyc07g042590.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53378536-53383846 transcript_region:SL2.40ch07:53378536..53383846- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00040223g0011.1 protein AED:0.11 eAED:0.11 QI:0|0.6|0.66|1|0.8|0.5|6|0|727; (*GB) gi|297736029|emb|CBI24067.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=1e-64) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT2G07170.1 (e_value=0.0) | Symbols: | ARM repeat superfamily protein | chr2:2975565-2978692 FORWARD LENGTH=820;; (*ITAG) Solyc07g042580.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:53367985-53373431 transcript_region:SL2.40ch07:53367985..53373431+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00012339g0001.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|1|1|2|0|261; (*GB) gi|252972646|dbj|BAH84784.1| (e_value=5e-59) cytochrome P450 [Nicotiana tabacum];; (*SWP) sp|O65790|C81F1_ARATH (e_value=2e-30) Cytochrome P450 81F1 OS=Arabidopsis thaliana GN=CYP81F1 PE=2 SV=2;; (*TAIR) AT3G28740.1 (e_value=9e-38) | Symbols: CYP81D1 | Cytochrome P450 superfamily protein | chr3:10788764-10790552 REVERSE LENGTH=509;; (*ITAG) Solyc04g078340.2.1 (e_value=2e-57) genomic_reference:SL2.40ch04 gene_region:60696429-60698416 transcript_region:SL2.40ch04:60696429..60698416+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00012339g0105.1 protein AED:0.83 eAED:0.83 QI:0|0|0|0.25|1|0.75|4|0|114 NbS00018195g0005.1 protein AED:0.07 eAED:0.07 QI:0|1|0.85|1|0.83|0.71|7|1704|673; (*GB) gi|359496573|ref|XP_002271439.2| (e_value=6e-152) PREDICTED: uncharacterized protein LOC100241484 [Vitis vinifera];; (*TAIR) AT1G11480.1 (e_value=5e-81) | Symbols: | eukaryotic translation initiation factor-related | chr1:3864368-3866750 REVERSE LENGTH=578;; (*ITAG) Solyc02g079880.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:38853992-38859262 transcript_region:SL2.40ch02:38853992..38859262- functional_description:"Translation initiation factor-related (AHRD V1 ***- D3YBD7_TRIRP)"; NbS00041932g0003.1 protein AED:0.35 eAED:0.35 QI:0|0.33|0.25|1|1|1|4|0|256; (*GB) gi|359496591|ref|XP_003635273.1| (e_value=9e-95) PREDICTED: epoxide hydrolase 2-like [Vitis vinifera];; (*SWP) sp|O31581|YFHM_BACSU (e_value=2e-31) AB hydrolase superfamily protein yfhM OS=Bacillus subtilis (strain 168) GN=yfhM PE=3 SV=1;; (*TAIR) AT4G02340.1 (e_value=1e-45) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc02g078570.2.1 (e_value=4e-131) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00014971g0012.1 protein AED:0.03 eAED:0.03 QI:0|0.75|0.8|1|1|1|5|38|440; (*GB) gi|255571497|ref|XP_002526696.1| (e_value=9e-146) protein phosphatase-2c, putative [Ricinus communis];; (*SWP) sp|Q9M8R7|P2C33_ARATH (e_value=2e-112) Probable protein phosphatase 2C 33 OS=Arabidopsis thaliana GN=PPC6-1 PE=1 SV=1;; (*TAIR) AT3G02750.2 (e_value=1e-113) | Symbols: | Protein phosphatase 2C family protein | chr3:593601-595457 REVERSE LENGTH=492;; (*ITAG) Solyc10g076320.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58564773-58567879 transcript_region:SL2.40ch10:58564773..58567879+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- A6NA79_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00014971g0011.1 protein AED:0.32 eAED:0.32 QI:0|0.62|0.44|0.88|0.75|0.77|9|0|333; (*GB) gi|225439576|ref|XP_002265215.1| (e_value=2e-90) PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera];; (*SWP) sp|Q8RWU5|FBL3_ARATH (e_value=3e-71) F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1;; (*TAIR) AT5G01720.1 (e_value=2e-72) | Symbols: | RNI-like superfamily protein | chr5:267118-270391 REVERSE LENGTH=665;; (*ITAG) Solyc10g076290.1.1 (e_value=6e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58549205-58554411 transcript_region:SL2.40ch10:58549205..58554411+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 3 (AHRD V1 ***- FBL3_ARATH); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00059417g0009.1 protein AED:0.26 eAED:0.26 QI:0|0.5|0|1|0.5|0.33|3|0|913; (*GB) gi|225458603|ref|XP_002282770.1| (e_value=0.0) PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Vitis vinifera];; (*SWP) sp|O48724|WEB1_ARATH (e_value=0.0) Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 OS=Arabidopsis thaliana GN=WEB1 PE=1 SV=1;; (*TAIR) AT2G26570.1 (e_value=0.0) | Symbols: WEB1 | Plant protein of unknown function (DUF827) | chr2:11299565-11302076 FORWARD LENGTH=807;; (*ITAG) Solyc07g022910.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:23226837-23229990 transcript_region:SL2.40ch07:23226837..23229990- functional_description:"Myosin heavy chain-like (AHRD V1 ***- Q8LHQ6_ORYSJ); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00059417g0011.1 protein AED:0.19 eAED:0.19 QI:23|0.8|0.66|1|0.6|0.83|6|0|251; (*GB) gi|225458605|ref|XP_002284724.1| (e_value=7e-106) PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SQL2|CB24_PEA (e_value=6e-46) Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1;; (*TAIR) AT1G45474.2 (e_value=3e-96) | Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256;; (*ITAG) Solyc07g022900.2.1 (e_value=2e-102) genomic_reference:SL2.40ch07 gene_region:23224809-23226448 transcript_region:SL2.40ch07:23224809..23226448+ go_terms:GO:0031409 functional_description:"Chlorophyll a-b binding protein 4, chloroplastic (AHRD V1 **** CA4_ARATH); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0031409 NbC25282771g0001.1 protein AED:0.03 eAED:0.38 QI:0|0|0|1|0|0|2|0|118 NbS00056555g0001.1 protein AED:0.21 eAED:0.22 QI:0|0|0|1|1|1|2|0|136; (*GB) gi|156070790|gb|ABU45202.1| (e_value=3e-39) unknown [Solanum bulbocastanum];; (*TAIR) AT5G65650.1 (e_value=6e-30) | Symbols: | Protein of unknown function (DUF1195) | chr5:26239588-26241195 FORWARD LENGTH=185;; (*ITAG) Solyc02g085480.2.1 (e_value=3e-38) genomic_reference:SL2.40ch02 gene_region:42931628-42935881 transcript_region:SL2.40ch02:42931628..42935881+ functional_description:"BAC19.4 (AHRD V1 ***- Q9FYX2_SOLLC); contains Interpro domain(s) IPR010608 Protein of unknown function DUF1195 "; NbS00056555g0009.1 protein AED:0.04 eAED:0.04 QI:0|1|0.66|1|0.5|0.66|3|0|373; (*GB) gi|156070791|gb|ABU45203.1| (e_value=0.0) unknown [Solanum bulbocastanum];; (*TAIR) AT5G66740.1 (e_value=0.0) | Symbols: | Protein of unknown function (DUF620) | chr5:26647114-26648558 FORWARD LENGTH=370;; (*ITAG) Solyc02g085490.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:42936944-42938325 transcript_region:SL2.40ch02:42936944..42938325- functional_description:"Os12g0581300 protein (Fragment) (AHRD V1 *-*- Q0IMB2_ORYSJ); contains Interpro domain(s) IPR006873 Protein of unknown function DUF620 "; NbS00011140g0006.1 protein AED:0.16 eAED:0.17 QI:0|0.75|0.44|1|1|1|9|0|696; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=0.0) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=9e-59) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G20950.2 (e_value=0.0) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc11g071640.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52141513-52144602 transcript_region:SL2.40ch11:52141513..52144602+ go_terms:GO:0008810 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0008810 NbS00061591g0004.1 protein AED:0.25 eAED:0.27 QI:0|0|0|0.5|1|1|2|0|477; (*GB) gi|224140139|ref|XP_002323442.1| (e_value=1e-177) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZUT4|PP192_ARATH (e_value=1e-155) Pentatricopeptide repeat-containing protein At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1;; (*TAIR) AT2G37320.1 (e_value=1e-156) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:15667223-15668725 FORWARD LENGTH=500;; (*ITAG) Solyc09g005990.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:677639-679169 transcript_region:SL2.40ch09:677639..679169+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00054872g0005.1 protein AED:0.03 eAED:0.07 QI:0|0|0|1|0|0|2|0|1044; (*GB) gi|225447241|ref|XP_002272784.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Vitis vinifera];; (*SWP) sp|Q9C9U0|PP118_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1;; (*TAIR) AT1G73710.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27721190-27724165 FORWARD LENGTH=991;; (*ITAG) Solyc07g054480.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60117772-60120816 transcript_region:SL2.40ch07:60117772..60120816- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRL4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022230g0003.1 protein AED:0.06 eAED:0.06 QI:230|0.83|0.85|1|0.66|0.71|7|507|322; (*GB) gi|350534656|ref|NP_001234152.1| (e_value=0.0) cytosolic malate dehydrogenase [Solanum lycopersicum];; (*SWP) sp|Q08062|MDHC_MAIZE (e_value=0.0) Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2;; (*TAIR) AT5G43330.1 (e_value=0.0) | Symbols: | Lactate/malate dehydrogenase family protein | chr5:17390552-17392449 FORWARD LENGTH=332;; (*ITAG) Solyc01g090710.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76110717-76113403 transcript_region:SL2.40ch01:76110717..76113403+ go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase, cytoplasmic (AHRD V1 **** MDHC_ORYSJ); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00027444g0010.1 protein AED:0.18 eAED:0.18 QI:98|1|0.75|1|0.33|0.75|4|0|213; (*GB) gi|351734440|ref|NP_001234981.1| (e_value=6e-80) uncharacterized protein LOC100306178 [Glycine max];; (*TAIR) AT5G04910.1 (e_value=1e-63) | Symbols: | unknown protein; Has 71 Blast hits to 71 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr5:1437695-1438770 FORWARD LENGTH=222;; (*ITAG) Solyc10g039380.1.1 (e_value=4e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21450345-21459023 transcript_region:SL2.40ch10:21450345..21459023+ functional_description:"C19orf60 homolog (AHRD V1 *-*- C0H7J3_SALSA)"; NbS00027444g0014.1 protein AED:0.31 eAED:0.31 QI:0|1|0.66|1|1|1|3|0|146; (*GB) gi|225424768|ref|XP_002266853.1| (e_value=6e-33) PREDICTED: uncharacterized protein LOC100251854 [Vitis vinifera];; (*TAIR) AT1G10522.2 (e_value=1e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3470009-3471291 FORWARD LENGTH=179;; (*ITAG) Solyc05g006040.2.1 (e_value=8e-50) genomic_reference:SL2.40ch05 gene_region:773976-777349 transcript_region:SL2.40ch05:773976..777349- functional_description:"Unknown Protein (AHRD V1)"; NbS00027444g0009.1 protein AED:0.33 eAED:0.44 QI:0|0.5|0.33|1|1|1|3|0|138; (*GB) gi|225424766|ref|XP_002268639.1| (e_value=7e-50) PREDICTED: uncharacterized protein LOC100250100 [Vitis vinifera];; (*TAIR) AT1G60010.1 (e_value=3e-42) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:22095660-22096434 REVERSE LENGTH=173;; (*ITAG) Solyc05g006030.2.1 (e_value=1e-80) genomic_reference:SL2.40ch05 gene_region:773056-774112 transcript_region:SL2.40ch05:773056..774112+ functional_description:"Genomic DNA chromosome 5 P1 clone MQB2 (AHRD V1 **-- Q9FM06_ARATH)"; NbS00035831g0008.1 protein AED:0.25 eAED:0.25 QI:128|0.66|0.5|1|0.66|0.75|4|177|225; (*GB) gi|359489009|ref|XP_002278703.2| (e_value=2e-82) PREDICTED: uncharacterized protein LOC100249192 [Vitis vinifera];; (*TAIR) AT5G39530.1 (e_value=6e-74) | Symbols: | Protein of unknown function (DUF1997) | chr5:15826285-15827517 REVERSE LENGTH=239;; (*ITAG) Solyc02g067120.2.1 (e_value=1e-101) genomic_reference:SL2.40ch02 gene_region:31920286-31922757 transcript_region:SL2.40ch02:31920286..31922757- functional_description:"Genomic DNA chromosome 5 P1 clone MUL8 (AHRD V1 ***- Q9FLY2_ARATH); contains Interpro domain(s) IPR018971 Protein of unknown function DUF1997 "; NbS00035831g0009.1 protein AED:0.00 eAED:0.02 QI:0|1|0.5|1|1|1|2|47|434; (*GB) gi|225452887|ref|XP_002283932.1| (e_value=2e-59) PREDICTED: uncharacterized protein At5g39570 [Vitis vinifera];; (*SWP) sp|Q9FKA5|Y5957_ARATH (e_value=1e-30) Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1;; (*TAIR) AT5G39570.1 (e_value=1e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:15844021-15845827 FORWARD LENGTH=381;; (*ITAG) Solyc02g067150.2.1 (e_value=5e-81) genomic_reference:SL2.40ch02 gene_region:31930256-31931532 transcript_region:SL2.40ch02:31930256..31931532+ functional_description:"Pro-resilin (AHRD V1 **-- B6T4Q5_MAIZE)"; NbS00030696g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|476; (*GB) gi|82395822|gb|ABB72475.1| (e_value=0.0) phenylacetaldehyde synthase [Petunia x hybrida];; (*SWP) sp|P54768|TYDC1_PAPSO (e_value=0.0) Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1;; (*TAIR) AT2G20340.1 (e_value=0.0) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490;; (*ITAG) Solyc03g044120.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:12100780-12102262 transcript_region:SL2.40ch03:12100780..12102262- go_terms:GO:0004837,GO:0004058 functional_description:"Aromatic L-amino acid decarboxylase (AHRD V1 **** A6BM85_ROSHC); contains Interpro domain(s) IPR010977 Aromatic-L-amino-acid decarboxylase "; GO:0004837,GO:0004058 NbS00020322g0005.1 protein AED:0.32 eAED:0.34 QI:0|0.66|0.28|1|0.83|0.85|7|0|409; (*GB) gi|255564816|ref|XP_002523402.1| (e_value=0.0) Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q9FM85|Y5564_ARATH (e_value=0.0) Probable receptor-like protein kinase At5g56460 OS=Arabidopsis thaliana GN=At5g56460 PE=1 SV=1;; (*TAIR) AT5G56460.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:22865509-22867866 FORWARD LENGTH=408;; (*ITAG) Solyc01g028830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:33505886-33509708 transcript_region:SL2.40ch01:33505886..33509708- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00009380g0001.1 protein AED:0.16 eAED:0.84 QI:91|0|0.5|1|0|0.5|2|0|130 NbS00010365g0009.1 protein AED:0.17 eAED:0.17 QI:550|0.93|0.75|1|0.8|0.81|16|0|1120; (*GB) gi|224122486|ref|XP_002330493.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWW0|ALE2_ARATH (e_value=5e-145) Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1;; (*TAIR) AT5G56890.1 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr5:23010801-23015559 REVERSE LENGTH=1113;; (*ITAG) Solyc07g039340.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:44498149-44505406 transcript_region:SL2.40ch07:44498149..44505406- go_terms:GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 *-** A7VM33_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbC25139596g0001.1 protein AED:0.16 eAED:0.21 QI:0|0|0|1|1|1|2|0|104; (*GB) gi|156763848|emb|CAO99126.1| (e_value=2e-44) putative cinnamyl alcohol dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9ZRF1|MTDH_FRAAN (e_value=4e-37) Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1;; (*TAIR) AT4G37980.1 (e_value=9e-35) | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated gene 3-1 | chr4:17852670-17854302 FORWARD LENGTH=357;; (*ITAG) Solyc11g011330.1.1 (e_value=1e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4375432-4377584 transcript_region:SL2.40ch11:4375432..4377584+ go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase (AHRD V1 **** D1FWZ8_SOYBN); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00006380g0006.1 protein AED:0.09 eAED:0.09 QI:0|0|0|1|1|1|2|0|173; (*GB) gi|224077620|ref|XP_002305331.1| (e_value=1e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=1e-16) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=9e-18) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc04g056740.1.1 (e_value=4e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:53957569-53958111 transcript_region:SL2.40ch04:53957569..53958111- go_terms:GO:0017075 functional_description:"MADS-box protein (AHRD V1 ***- D7MTU5_ARALY); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00006380g0007.1 protein AED:0.11 eAED:0.11 QI:0|0|0|0.5|1|1|2|0|128; (*GB) gi|225446345|ref|XP_002272406.1| (e_value=2e-30) PREDICTED: GPI-anchored protein LORELEI [Vitis vinifera];; (*SWP) sp|B3GS44|LRE_ARATH (e_value=8e-23) GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1;; (*TAIR) AT5G56170.1 (e_value=7e-30) | Symbols: LLG1 | LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 | chr5:22736072-22737108 FORWARD LENGTH=168;; (*ITAG) Solyc10g008360.2.1 (e_value=9e-40) genomic_reference:SL2.40ch10 gene_region:2487795-2489641 transcript_region:SL2.40ch10:2487795..2489641- functional_description:"GPI-anchored protein (AHRD V1 ***- A2PZD8_IPONI)"; NbS00036658g0003.1 protein AED:0.23 eAED:0.37 QI:0|0|0|1|0|0|2|0|164; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=7e-20) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc07g019500.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:11851886-11852770 transcript_region:SL2.40ch07:11851886..11852770+ functional_description:"Unknown Protein (AHRD V1)"; NbS00057182g0005.1 protein AED:0.12 eAED:0.14 QI:0|0.83|0.57|1|0.83|0.85|7|0|863; (*GB) gi|255585740|ref|XP_002533551.1| (e_value=0.0) ubiquitin ligase protein cop1, putative [Ricinus communis];; (*SWP) sp|Q94BM7|SPA4_ARATH (e_value=0.0) Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1;; (*TAIR) AT1G53090.2 (e_value=0.0) | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-19786690 FORWARD LENGTH=794;; (*ITAG) Solyc12g013840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4630904-4638122 transcript_region:SL2.40ch12:4630904..4638122+ go_terms:GO:0006468 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0006468 NbS00041537g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|355; (*GB) gi|356545419|ref|XP_003541140.1| (e_value=2e-136) PREDICTED: probable purine permease 5-like [Glycine max];; (*SWP) sp|Q9ZUH3|PUP5_ARATH (e_value=8e-125) Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2;; (*TAIR) AT2G24220.2 (e_value=6e-126) | Symbols: PUP5 | purine permease 5 | chr2:10300603-10301688 FORWARD LENGTH=361;; (*ITAG) Solyc07g005660.2.1 (e_value=5e-149) genomic_reference:SL2.40ch07 gene_region:536448-539294 transcript_region:SL2.40ch07:536448..539294+ go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00035962g0001.1 protein AED:0.07 eAED:0.07 QI:0|-1|0|1|-1|1|1|0|189; (*GB) gi|225426921|ref|XP_002264729.1| (e_value=9e-69) PREDICTED: 21 kDa protein [Vitis vinifera];; (*SWP) sp|P17407|21KD_DAUCA (e_value=3e-47) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT1G62770.1 (e_value=1e-52) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204;; (*ITAG) Solyc08g007450.1.1 (e_value=5e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2025883-2026491 transcript_region:SL2.40ch08:2025883..2026491- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00018477g0024.1 protein AED:0.20 eAED:0.20 QI:223|1|1|1|0.91|0.84|13|412|418; (*GB) gi|82400162|gb|ABB72820.1| (e_value=0.0) oligouridylate binding protein-like protein [Solanum tuberosum];; (*SWP) sp|Q01085|TIAR_HUMAN (e_value=9e-60) Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1;; (*TAIR) AT1G17370.1 (e_value=0.0) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=419;; (*ITAG) Solyc03g122180.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64148757-64153338 transcript_region:SL2.40ch03:64148757..64153338- go_terms:GO:0003730 functional_description:"mRNA 3-UTR binding protein (AHRD V1 **** B6T3L2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003730 NbS00018477g0027.1 protein AED:0.11 eAED:0.11 QI:7|0.5|0.33|1|1|0.66|3|0|169; (*GB) gi|78191464|gb|ABB29953.1| (e_value=9e-87) unknown [Solanum tuberosum];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=3e-84) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=2e-85) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc03g122090.2.1 (e_value=2e-89) genomic_reference:SL2.40ch03 gene_region:64108342-64111692 transcript_region:SL2.40ch03:64108342..64111692+ go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR001388 Synaptobrevin IPR010908 Longin "; GO:0005484 NbS00018477g0028.1 protein AED:0.10 eAED:0.14 QI:0|0.6|0.54|1|0.8|0.72|11|212|1412; (*GB) gi|359482355|ref|XP_003632759.1| (e_value=0.0) PREDICTED: ABC transporter B family member 19-like [Vitis vinifera];; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=0.0) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=0.0) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc03g122070.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64100560-64102655 transcript_region:SL2.40ch03:64100560..64102655+ go_terms:GO:0008559 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 **-- YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0008559 NbS00018477g0023.1 protein AED:0.21 eAED:0.21 QI:0|0.42|0.37|0.87|0.42|0.5|8|0|1299; (*GB) gi|225442040|ref|XP_002271999.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100251482 [Vitis vinifera];; (*TAIR) AT3G14172.1 (e_value=1e-106) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: COP1-interacting protein-related (TAIR:AT1G72410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:4698860-4704773 REVERSE LENGTH=1270;; (*ITAG) Solyc12g049510.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:46599025-46605833 transcript_region:SL2.40ch12:46599025..46605833- functional_description:"Erect panical 2 (AHRD V1 *--- B8B8K3_ORYSI)"; NbS00018477g0025.1 protein AED:0.24 eAED:0.24 QI:0|0.5|0.4|1|0.5|0.6|5|230|111 NbS00018477g0026.1 protein AED:0.32 eAED:0.34 QI:31|0.65|0.70|1|0.61|0.66|27|162|836; (*GB) gi|255576607|ref|XP_002529194.1| (e_value=1e-179) (S)-2-hydroxy-acid oxidase, putative [Ricinus communis];; (*SWP) sp|Q9LJH5|GLO4_ARATH (e_value=1e-172) Peroxisomal (S)-2-hydroxy-acid oxidase GLO4 OS=Arabidopsis thaliana GN=GLO4 PE=2 SV=1;; (*TAIR) AT3G14130.1 (e_value=9e-174) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4685844-4687852 REVERSE LENGTH=363;; (*ITAG) Solyc03g122140.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64135516-64138456 transcript_region:SL2.40ch03:64135516..64138456- go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- B2WEY8_PYRTR); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00028820g0008.1 protein AED:0.21 eAED:0.21 QI:0|0.5|0.4|0.6|0.75|0.4|5|0|348; (*GB) gi|224066541|ref|XP_002302127.1| (e_value=2e-167) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9UT85|YIPC_SCHPO (e_value=3e-66) Uncharacterized WD repeat-containing protein C343.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC343.04c PE=2 SV=1;; (*TAIR) AT5G08560.2 (e_value=1e-147) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:2771104-2773827 REVERSE LENGTH=589;; (*ITAG) Solyc05g025510.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:32942405-32954416 transcript_region:SL2.40ch05:32942405..32954416- go_terms:GO:0000166 functional_description:"WD-repeat protein-like (AHRD V1 ***- Q9FNN2_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00028820g0007.1 protein AED:0.28 eAED:0.28 QI:0|0.66|0.5|1|1|1|4|0|251; (*GB) gi|384038821|gb|AFH58001.1| (e_value=4e-173) chloroplast PsbP1 precursor [Nicotiana benthamiana];; (*SWP) sp|P18212|PSBP2_TOBAC (e_value=5e-172) Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2;; (*TAIR) AT1G06680.1 (e_value=9e-113) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=1e-129) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00002457g0003.1 protein AED:0.08 eAED:0.08 QI:154|0.8|0.66|1|0.8|0.83|6|223|162; (*GB) gi|90823167|gb|ABE01085.1| (e_value=2e-71) BTF3 [Nicotiana benthamiana];; (*SWP) sp|Q6PC91|BT3L4_DANRE (e_value=1e-33) Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1;; (*TAIR) AT1G73230.1 (e_value=8e-66) | Symbols: | Nascent polypeptide-associated complex NAC | chr1:27540506-27541364 REVERSE LENGTH=165;; (*ITAG) Solyc09g010330.2.1 (e_value=7e-73) genomic_reference:SL2.40ch09 gene_region:3715630-3718303 transcript_region:SL2.40ch09:3715630..3718303- go_terms:GO:0051082 functional_description:"Nascent polypeptide-associated complex subunit beta (AHRD V1 *--- C5FKK9_NANOT); contains Interpro domain(s) IPR002715 Nascent polypeptide-associated complex NAC "; GO:0051082 NbS00032185g0009.1 protein AED:0.18 eAED:0.18 QI:136|0.83|0.57|1|0.66|0.42|7|0|623; (*GB) gi|147817663|emb|CAN64499.1| (e_value=5e-156) hypothetical protein VITISV_043672 [Vitis vinifera];; (*TAIR) AT3G58650.1 (e_value=9e-49) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). | chr3:21696349-21699219 REVERSE LENGTH=820;; (*ITAG) Solyc01g060410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:63709452-63713187 transcript_region:SL2.40ch01:63709452..63713187+ functional_description:"Unknown Protein (AHRD V1)"; NbS00032185g0014.1 protein AED:0.22 eAED:0.22 QI:226|0.92|0.8|1|0.85|0.86|15|326|498; (*GB) gi|296083281|emb|CBI22917.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5PNU3|AMSH3_ARATH (e_value=0.0) AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana GN=AMSH3 PE=1 SV=2;; (*TAIR) AT4G16144.1 (e_value=0.0) | Symbols: AMSH3 | associated molecule with the SH3 domain of STAM 3 | chr4:9138053-9141422 REVERSE LENGTH=507;; (*ITAG) Solyc01g060280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:62800092-62812738 transcript_region:SL2.40ch01:62800092..62812738+ go_terms:GO:0005515 functional_description:"STAM binding protein (AHRD V1 *--* B2W8T5_PYRTR); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0005515 NbS00032185g0007.1 protein AED:0.51 eAED:0.51 QI:0|0|0|0.5|1|1|2|0|155; (*GB) gi|147817663|emb|CAN64499.1| (e_value=3e-56) hypothetical protein VITISV_043672 [Vitis vinifera];; (*TAIR) AT3G58650.1 (e_value=3e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26910.1); Has 2350 Blast hits to 1412 proteins in 248 species: Archae - 0; Bacteria - 487; Metazoa - 577; Fungi - 236; Plants - 184; Viruses - 4; Other Eukaryotes - 862 (source: NCBI BLink). | chr3:21696349-21699219 REVERSE LENGTH=820;; (*ITAG) Solyc01g060410.2.1 (e_value=8e-72) genomic_reference:SL2.40ch01 gene_region:63709452-63713187 transcript_region:SL2.40ch01:63709452..63713187+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048423g0003.1 protein AED:0.22 eAED:0.28 QI:1155|0.83|0.85|1|0.33|0.42|7|963|72 NbS00009110g0015.1 protein AED:0.15 eAED:0.16 QI:0|0|0|0.83|0.2|0.33|6|0|412; (*GB) gi|225448174|ref|XP_002264330.1| (e_value=3e-175) PREDICTED: COBRA-like protein 1-like [Vitis vinifera];; (*SWP) sp|O04500|COBL6_ARATH (e_value=8e-147) COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2;; (*TAIR) AT1G09790.1 (e_value=6e-148) | Symbols: COBL6 | COBRA-like protein 6 precursor | chr1:3168568-3170819 REVERSE LENGTH=454;; (*ITAG) Solyc01g103860.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84133359-84135862 transcript_region:SL2.40ch01:84133359..84135862+ functional_description:"Ch-cobra (AHRD V1 ***- B7S746_CUNLA); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00009110g0014.1 protein AED:0.23 eAED:0.23 QI:0|0.8|0.5|1|0.4|0.5|6|0|226; (*GB) gi|255584608|ref|XP_002533028.1| (e_value=4e-148) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W3M6|UBCP_ARATH (e_value=3e-141) Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana GN=At4g06599 PE=2 SV=1;; (*TAIR) AT4G06599.1 (e_value=2e-142) | Symbols: | ubiquitin family protein | chr4:3666079-3667495 REVERSE LENGTH=340;; (*ITAG) Solyc01g103850.2.1 (e_value=6e-140) genomic_reference:SL2.40ch01 gene_region:84125747-84132192 transcript_region:SL2.40ch01:84125747..84132192+ go_terms:GO:0005634 functional_description:"Ubiquitin-like domain containing CTD phosphatase 1 (AHRD V1 ***- B6TA38_MAIZE); contains Interpro domain(s) IPR011943 HAD-superfamily hydrolase, subfamily IIID "; GO:0005634 NbS00009110g0016.1 protein AED:0.07 eAED:0.07 QI:0|1|0|1|1|1|2|0|215; (*GB) gi|225448170|ref|XP_002264291.1| (e_value=2e-26) PREDICTED: ZF-HD homeobox protein At4g24660-like [Vitis vinifera];; (*TAIR) AT2G18350.1 (e_value=1e-22) | Symbols: AtHB24, HB24, ZHD6 | homeobox protein 24 | chr2:7971122-7971910 REVERSE LENGTH=262;; (*ITAG) Solyc01g103830.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:84113442-84114496 transcript_region:SL2.40ch01:84113442..84114496- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 **-- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00052875g0005.1 protein AED:0.20 eAED:0.22 QI:173|0.75|0.77|1|0.5|0.66|9|473|398; (*GB) gi|83283981|gb|ABC01898.1| (e_value=0.0) mitochondrial carrier-like protein [Solanum tuberosum];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=2e-66) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT4G01100.1 (e_value=0.0) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=352;; (*ITAG) Solyc01g095570.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78536531-78541575 transcript_region:SL2.40ch01:78536531..78541575- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00052875g0002.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|103; (*ITAG) Solyc01g095560.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:78535286-78536197 transcript_region:SL2.40ch01:78535286..78536197+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005345g0003.1 protein AED:0.14 eAED:0.14 QI:346|0|0.2|0.2|0.75|0.8|5|308|160 NbS00005345g0116.1 protein AED:0.16 eAED:0.16 QI:0|0.77|0.8|1|0.77|0.8|10|372|629 NbS00005345g0117.1 protein AED:0.16 eAED:0.16 QI:150|1|1|1|0.75|0.8|5|714|156 NbS00012529g0003.1 protein AED:0.15 eAED:0.15 QI:474|0.62|0.66|1|1|1|9|294|1034; (*GB) gi|359474019|ref|XP_002269404.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100261513 [Vitis vinifera];; (*TAIR) AT1G63300.1 (e_value=0.0) | Symbols: | Myosin heavy chain-related protein | chr1:23482193-23486067 FORWARD LENGTH=1029;; (*ITAG) Solyc08g007970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:2472012-2478084 transcript_region:SL2.40ch08:2472012..2478084+ go_terms:GO:0016539 functional_description:"SKIP interacting protein 24 (Fragment) (AHRD V1 *--- B8Q8B0_ORYSI); contains Interpro domain(s) IPR006141 Intein splicing site "; GO:0016539 NbS00001981g0009.1 protein AED:0.33 eAED:0.33 QI:202|0.83|0.57|1|0.5|0.57|7|0|242; (*GB) gi|359496122|ref|XP_002270110.2| (e_value=4e-79) PREDICTED: nudix hydrolase 2-like [Vitis vinifera];; (*SWP) sp|Q94B74|NUDT2_ARATH (e_value=7e-63) Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1;; (*TAIR) AT5G47650.1 (e_value=5e-64) | Symbols: ATNUDT2, ATNUDX2, NUDT2 | nudix hydrolase homolog 2 | chr5:19310391-19312084 REVERSE LENGTH=278;; (*ITAG) Solyc10g005950.2.1 (e_value=2e-107) genomic_reference:SL2.40ch10 gene_region:733326-738148 transcript_region:SL2.40ch10:733326..738148+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00001981g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|227; (*GB) gi|225461924|ref|XP_002267825.1| (e_value=2e-74) PREDICTED: fasciclin-like arabinogalactan protein 1-like [Vitis vinifera];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=3e-62) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=2e-63) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc10g005960.1.1 (e_value=7e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00001981g0003.1 protein AED:0.26 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|255563486|ref|XP_002522745.1| (e_value=9e-86) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FM65|FLA1_ARATH (e_value=3e-71) Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana GN=FLA1 PE=1 SV=1;; (*TAIR) AT5G55730.2 (e_value=2e-72) | Symbols: FLA1 | FASCICLIN-like arabinogalactan 1 | chr5:22558375-22560392 REVERSE LENGTH=424;; (*ITAG) Solyc10g005960.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00024389g0004.1 protein AED:0.08 eAED:0.15 QI:0|0|0|1|0.33|0.5|4|0|432; (*GB) gi|225436962|ref|XP_002276508.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100264786 [Vitis vinifera];; (*TAIR) AT1G03290.2 (e_value=4e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). | chr1:807970-810680 FORWARD LENGTH=571;; (*ITAG) Solyc09g064860.2.1 (e_value=2e-153) genomic_reference:SL2.40ch09 gene_region:57942081-57949333 transcript_region:SL2.40ch09:57942081..57949333- functional_description:"CUE domain containing protein expressed (AHRD V1 *-*- Q7XG35_ORYSJ); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00026999g0005.1 protein AED:0.05 eAED:0.07 QI:0|1|0.66|1|1|1|6|0|548; (*GB) gi|225466227|ref|XP_002267333.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258199 [Vitis vinifera];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=4e-65) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT1G65910.1 (e_value=7e-141) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc02g036430.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:21468369-21472137 transcript_region:SL2.40ch02:21468369..21472137+ go_terms:GO:0003700 functional_description:"NAC-domain transcription factor (AHRD V1 *-** D3WFN5_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00041580g0011.1 protein AED:0.13 eAED:0.13 QI:77|0.25|0.2|1|0.25|0.2|5|11|337; (*GB) gi|224101835|ref|XP_002312439.1| (e_value=3e-145) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M9Q6|SCP50_ARATH (e_value=8e-104) Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1;; (*TAIR) AT1G15000.1 (e_value=6e-105) | Symbols: scpl50 | serine carboxypeptidase-like 50 | chr1:5168613-5169947 FORWARD LENGTH=444;; (*ITAG) Solyc09g007640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1208268-1210947 transcript_region:SL2.40ch09:1208268..1210947+ go_terms:GO:0042802 functional_description:"Serine carboxypeptidase (AHRD V1 ***- A8HP98_CHLRE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802 NbS00041580g0010.1 protein AED:0.23 eAED:0.23 QI:0|0.88|0.9|1|1|0.9|10|347|475; (*GB) gi|350538211|ref|NP_001234332.1| (e_value=0.0) P58IPK [Solanum lycopersicum];; (*SWP) sp|Q54M21|DNJC3_DICDI (e_value=4e-50) DnaJ homolog subfamily C member 3 homolog OS=Dictyostelium discoideum GN=dnajc3 PE=3 SV=1;; (*TAIR) AT5G03160.1 (e_value=0.0) | Symbols: ATP58IPK, P58IPK | homolog of mamallian P58IPK | chr5:750286-752671 FORWARD LENGTH=482;; (*ITAG) Solyc09g007630.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1202699-1207893 transcript_region:SL2.40ch09:1202699..1207893+ go_terms:GO:0004860 functional_description:"Chaperone DnaJ (AHRD V1 *-*- C4JWN5_UNCRE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0004860 NbS00041580g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|236; (*GB) gi|30841338|gb|AAO92753.1| (e_value=1e-67) arabinogalactan protein [Gossypium hirsutum];; (*SWP) sp|Q8LEJ6|FLA11_ARATH (e_value=1e-62) Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana GN=FLA11 PE=2 SV=2;; (*TAIR) AT5G03170.1 (e_value=1e-63) | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein 11 | chr5:752898-753638 REVERSE LENGTH=246;; (*ITAG) Solyc09g007660.1.1 (e_value=6e-101) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:1214595-1215314 transcript_region:SL2.40ch09:1214595..1215314+ go_terms:GO:0004773 functional_description:"Fasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0004773 NbS00041580g0002.1 protein AED:0.36 eAED:0.36 QI:0|-1|0|1|-1|1|1|0|257; (*GB) gi|255557028|ref|XP_002519547.1| (e_value=7e-61) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8LEE9|FLA12_ARATH (e_value=8e-55) Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana GN=FLA12 PE=2 SV=2;; (*TAIR) AT5G60490.1 (e_value=6e-56) | Symbols: FLA12 | FASCICLIN-like arabinogalactan-protein 12 | chr5:24325916-24326665 REVERSE LENGTH=249;; (*ITAG) Solyc09g007650.1.1 (e_value=3e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1212465-1213208 transcript_region:SL2.40ch09:1212465..1213208+ functional_description:"Fasciclin-like arabinogalactan protein 7 (AHRD V1 ***- A9XTL2_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00058143g0003.1 protein AED:0.00 eAED:0.00 QI:86|1|1|1|1|1|3|107|334; (*GB) gi|224133346|ref|XP_002321544.1| (e_value=2e-74) predicted protein [Populus trichocarpa];; (*SWP) sp|P20025|MYB38_MAIZE (e_value=8e-32) Myb-related protein Zm38 OS=Zea mays PE=2 SV=1;; (*TAIR) AT3G28470.1 (e_value=4e-45) | Symbols: ATMYB35, TDF1 | Duplicated homeodomain-like superfamily protein | chr3:10674579-10675724 REVERSE LENGTH=317;; (*ITAG) Solyc03g113530.2.1 (e_value=2e-161) genomic_reference:SL2.40ch03 gene_region:57698509-57700231 transcript_region:SL2.40ch03:57698509..57700231+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 *-** Q9LSI7_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00014013g0001.1 protein AED:0.05 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|433; (*GB) gi|255578874|ref|XP_002530291.1| (e_value=0.0) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FKJ0|FK132_ARATH (e_value=0.0) F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1;; (*TAIR) AT5G60570.1 (e_value=0.0) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:24348713-24349894 FORWARD LENGTH=393;; (*ITAG) Solyc11g069320.1.1 (e_value=1e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51014957-51015613 transcript_region:SL2.40ch11:51014957..51015613+ functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7MTV4_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00060925g0007.1 protein AED:0.33 eAED:0.33 QI:189|0|0.25|1|1|0.75|4|0|323; (*GB) gi|3036948|dbj|BAA25392.1| (e_value=5e-156) light harvesting chlorophyll a/b-binding protein [Nicotiana sylvestris];; (*SWP) sp|P27492|CB21_TOBAC (e_value=8e-157) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-141) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=7e-158) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00060925g0010.1 protein AED:0.18 eAED:0.18 QI:0|0|0|1|0.5|0.33|3|0|488; (*GB) gi|157965837|gb|ABW06955.1| (e_value=0.0) chloroplast light-harvesting complex II protein precursor [Euglena gracilis];; (*SWP) sp|P27492|CB21_TOBAC (e_value=0.0) Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1;; (*TAIR) AT1G29930.1 (e_value=9e-164) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005770.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:540995-541798 transcript_region:SL2.40ch03:540995..541798+ go_terms:GO:0005515,GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0005515,GO:0016168 NbS00041166g0005.1 protein AED:0.73 eAED:0.73 QI:9|0|0|0.33|0.5|0.66|3|0|88; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=4e-44) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=7e-33) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=5e-34) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=7e-47) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00041166g0004.1 protein AED:0.12 eAED:0.12 QI:0|0|0|1|0|0|2|0|207; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=2e-64) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=2e-41) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=1e-42) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=3e-67) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00008330g0012.1 protein AED:0.00 eAED:0.00 QI:194|1|1|1|1|1|3|132|273; (*GB) gi|225446682|ref|XP_002277383.1| (e_value=2e-68) PREDICTED: probable WRKY transcription factor 65 [Vitis vinifera];; (*SWP) sp|Q9LP56|WRK65_ARATH (e_value=2e-56) Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1;; (*TAIR) AT3G58710.1 (e_value=9e-58) | Symbols: WRKY69, ATWRKY69 | WRKY DNA-binding protein 69 | chr3:21715192-21716766 FORWARD LENGTH=272;; (*ITAG) Solyc07g055280.2.1 (e_value=5e-144) genomic_reference:SL2.40ch07 gene_region:60692504-60696127 transcript_region:SL2.40ch07:60692504..60696127+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 5 (AHRD V1 ***- A7UGD2_SOLTU); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00008330g0013.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0.25|1|0.66|0.75|4|0|923; (*GB) gi|19568935|gb|AAL91978.1|AF483209_1 (e_value=0.0) putative trehalose synthase [Solanum tuberosum];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=0.0) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=0.0) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc07g055300.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:60708023-60714104 transcript_region:SL2.40ch07:60708023..60714104+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A1RU70_PYRIL); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00008330g0011.1 protein AED:0.10 eAED:0.10 QI:118|1|1|1|1|1|2|517|218; (*GB) gi|267527|sp|Q01111.1|YPT3_NICPL (e_value=2e-160) RecName: Full=Ras-related protein YPT3;; (*SWP) sp|Q01111|YPT3_NICPL (e_value=7e-162) Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1;; (*TAIR) AT1G06400.1 (e_value=1e-130) | Symbols: ARA2, ATRABA1A, ATRAB11E, ARA-2 | Ras-related small GTP-binding family protein | chr1:1951089-1952686 REVERSE LENGTH=216;; (*ITAG) Solyc07g055290.2.1 (e_value=5e-156) genomic_reference:SL2.40ch07 gene_region:60697004-60702293 transcript_region:SL2.40ch07:60697004..60702293- go_terms:GO:0005525,GO:0003924 functional_description:"Ras-related protein Rab-25 (AHRD V1 ***- RAB25_BOVIN); contains Interpro domain(s) IPR015595 Rab11-related "; GO:0005525,GO:0003924 NbS00008330g0015.1 protein AED:0.10 eAED:0.10 QI:0|0|0|1|0|0|3|0|654; (*GB) gi|225446691|ref|XP_002277494.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Vitis vinifera];; (*SWP) sp|Q8S9M4|PP198_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2;; (*TAIR) AT2G41080.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:17132857-17134554 FORWARD LENGTH=565;; (*ITAG) Solyc07g055310.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60714945-60716921 transcript_region:SL2.40ch07:60714945..60716921- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LGJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00008330g0010.1 protein AED:0.05 eAED:0.04 QI:0|0|0|0.5|0|0|2|0|100; (*GB) gi|364284008|ref|YP_004940490.1| (e_value=3e-56) rps12 gene product (chloroplast) [Boea hygrometrica];; (*SWP) sp|A4GYN8|RR12B_POPTR (e_value=2e-55) 30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa GN=rps12-B PE=3 SV=1;; (*ITAG) ATCG00905.1 (e_value=1e-48) | Symbols: RPS12C, RPS12 | ribosomal protein S12C | chrC:97999-98793 REVERSE LENGTH=123;; (*ITAG) Solyc11g021130.1.1 (e_value=1e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13369106-13370634 transcript_region:SL2.40ch11:13369106..13370634- go_terms:GO:0005840,GO:0015935 functional_description:"30S ribosomal protein S7 chloroplastic (AHRD V1 *-*- D3WBE1_9BORA); contains Interpro domain(s) IPR005717 Ribosomal protein S7, bacterial-type "; GO:0005840,GO:0015935 NbS00016705g0004.1 protein AED:0.30 eAED:0.30 QI:60|0.5|0.2|0.8|0.5|0.4|5|0|342; (*GB) gi|255545596|ref|XP_002513858.1| (e_value=1e-149) S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis];; (*SWP) sp|A1A4L5|ALKB8_BOVIN (e_value=2e-49) Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1;; (*TAIR) AT1G36310.2 (e_value=3e-132) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:13669644-13670934 FORWARD LENGTH=404;; (*ITAG) Solyc04g072390.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57012675-57014952 transcript_region:SL2.40ch04:57012675..57014952+ go_terms:GO:0008152 functional_description:"Alkylated DNA repair protein alkB 8 (AHRD V1 *--- D0MUQ0_PHYIN); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00009862g0001.1 protein AED:0.01 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|193; (*GB) gi|350537899|ref|NP_001234828.1| (e_value=2e-27) extensin-like protein Ext1 precursor [Solanum lycopersicum];; (*ITAG) Solyc12g044710.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45403274-45404128 transcript_region:SL2.40ch12:45403274..45404128+ functional_description:"Extensin-like protein Ext1 (Fragment) (AHRD V1 *--- Q8VX25_SOLLC)"; NbS00036637g0003.1 protein AED:0.19 eAED:0.19 QI:207|0.90|0.91|1|0.81|0.83|12|274|545; (*GB) gi|359480303|ref|XP_002267595.2| (e_value=0.0) PREDICTED: beta-glucosidase 11-like [Vitis vinifera];; (*SWP) sp|B3H5Q1|BGL11_ARATH (e_value=0.0) Beta-glucosidase 11 OS=Arabidopsis thaliana GN=BGLU11 PE=2 SV=2;; (*TAIR) AT1G02850.2 (e_value=0.0) | Symbols: BGLU11 | beta glucosidase 11 | chr1:630569-633085 FORWARD LENGTH=497;; (*ITAG) Solyc09g075060.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:62378413-62381481 transcript_region:SL2.40ch09:62378413..62381481- go_terms:GO:0004338 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00047441g0005.1 protein AED:0.01 eAED:0.05 QI:0|1|0.5|1|1|1|2|0|174; (*GB) gi|4514716|dbj|BAA75495.1| (e_value=3e-77) NtEPc [Nicotiana tabacum];; (*SWP) sp|Q9SK27|ENL1_ARATH (e_value=4e-25) Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2;; (*TAIR) AT3G18590.1 (e_value=1e-51) | Symbols: ENODL5, AtENODL5 | early nodulin-like protein 5 | chr3:6398670-6399337 FORWARD LENGTH=188;; (*ITAG) Solyc03g119880.2.1 (e_value=5e-82) genomic_reference:SL2.40ch03 gene_region:62476615-62477222 transcript_region:SL2.40ch03:62476615..62477222+ go_terms:GO:0009055,GO:0055114 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055,GO:0055114 NbS00033599g0003.1 protein AED:0.62 eAED:0.67 QI:0|0|0|1|0|0|2|0|169; (*ITAG) Solyc09g008110.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00055792g0005.1 protein AED:0.28 eAED:0.28 QI:0|1|0|1|0|0|2|0|175; (*GB) gi|27085290|gb|AAN85436.1| (e_value=8e-96) acyltransferase 2 [Capsicum chinense];; (*SWP) sp|Q5H873|HLTT_LUPAL (e_value=1e-60) 13-hydroxylupanine O-tigloyltransferase OS=Lupinus albus GN=HMT/HLT PE=1 SV=1;; (*TAIR) AT5G17540.1 (e_value=2e-49) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:5782061-5783682 REVERSE LENGTH=461;; (*ITAG) Solyc05g015800.2.1 (e_value=7e-97) genomic_reference:SL2.40ch05 gene_region:12077217-12079028 transcript_region:SL2.40ch05:12077217..12079028+ go_terms:GO:0010327 functional_description:"Acetyl coenzyme A cis-3-hexen-1-ol acetyl transferase (AHRD V1 **-* Q9SRQ2_ARATH); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00055792g0010.1 protein AED:0.31 eAED:0.31 QI:80|1|0.88|1|0.75|0.77|9|0|656; (*GB) gi|225427653|ref|XP_002270680.1| (e_value=0.0) PREDICTED: beta-amylase 8-like [Vitis vinifera];; (*SWP) sp|Q9FH80|BAM8_ARATH (e_value=0.0) Beta-amylase 8 OS=Arabidopsis thaliana GN=BAM8 PE=2 SV=1;; (*TAIR) AT5G45300.1 (e_value=0.0) | Symbols: BMY2, BAM8 | beta-amylase 2 | chr5:18353636-18356696 FORWARD LENGTH=689;; (*ITAG) Solyc08g005780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:604998-612717 transcript_region:SL2.40ch08:604998..612717- go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** B6SVZ0_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00055792g0008.1 protein AED:0.42 eAED:0.56 QI:0|0|0|1|0|0|2|0|65; (*GB) gi|27085290|gb|AAN85436.1| (e_value=5e-19) acyltransferase 2 [Capsicum chinense];; (*ITAG) Solyc08g005760.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:598414-600430 transcript_region:SL2.40ch08:598414..600430+ go_terms:GO:0010327 functional_description:"Alcohol acetyltransferase (AHRD V1 **-* B1A9J8_CUCME); contains Interpro domain(s) IPR003480 Transferase "; GO:0010327 NbS00055792g0009.1 protein AED:0.42 eAED:0.59 QI:0|0|0|1|0|0|2|0|61 NbS00009650g0004.1 protein AED:0.09 eAED:0.09 QI:0|-1|0|1|-1|1|1|0|473; (*GB) gi|255572268|ref|XP_002527073.1| (e_value=0.0) amino acid transporter, putative [Ricinus communis];; (*TAIR) AT3G13620.1 (e_value=0.0) | Symbols: | Amino acid permease family protein | chr3:4450904-4452556 REVERSE LENGTH=478;; (*ITAG) Solyc01g034080.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:36193018-36194430 transcript_region:SL2.40ch01:36193018..36194430+ go_terms:GO:0016020 functional_description:"Amino acid permease (Fragment) (AHRD V1 ***- B8C3S3_THAPS); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00009650g0014.1 protein AED:0.16 eAED:0.16 QI:217|1|1|1|1|1|2|417|132; (*GB) gi|225465807|ref|XP_002262740.1| (e_value=1e-66) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Vitis vinifera];; (*SWP) sp|Q9LHI0|NDUA6_ARATH (e_value=5e-62) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana GN=At3g12260 PE=2 SV=1;; (*TAIR) AT3G12260.1 (e_value=4e-63) | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr3:3909252-3910337 REVERSE LENGTH=133;; (*ITAG) Solyc01g022750.2.1 (e_value=1e-76) genomic_reference:SL2.40ch01 gene_region:32937521-32944195 transcript_region:SL2.40ch01:32937521..32944195- go_terms:GO:0008137 functional_description:"NADH dehydrogenase (AHRD V1 **** B5G1U3_TAEGU); contains Interpro domain(s) IPR008011 Complex 1 LYR protein "; GO:0008137 NbS00009650g0019.1 protein AED:0.18 eAED:0.18 QI:3|0.5|0.33|1|1|1|3|160|68 NbS00009650g0015.1 protein AED:0.38 eAED:0.39 QI:0|1|0|1|1|1|2|0|284; (*GB) gi|297746440|emb|CBI16496.3| (e_value=1e-176) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=4e-167) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=3e-168) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g022740.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:32850498-32855494 transcript_region:SL2.40ch01:32850498..32855494- functional_description:"Kelch-like protein 21 (AHRD V1 *-*- KLH21_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009650g0003.1 protein AED:0.41 eAED:0.50 QI:0|0|0|1|1|1|2|0|200; (*GB) gi|255572244|ref|XP_002527061.1| (e_value=3e-97) Protein AFR, putative [Ricinus communis];; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=1e-80) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=8e-82) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g022740.2.1 (e_value=8e-112) genomic_reference:SL2.40ch01 gene_region:32850498-32855494 transcript_region:SL2.40ch01:32850498..32855494- functional_description:"Kelch-like protein 21 (AHRD V1 *-*- KLH21_MOUSE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00009650g0005.1 protein AED:0.29 eAED:0.29 QI:231|0.9|0.81|1|1|1|11|564|313; (*GB) gi|11133821|sp|Q9XGH7.1|PP2A_TOBAC (e_value=0.0) RecName: Full=Serine/threonine-protein phosphatase PP2A catalytic subunit;; (*SWP) sp|Q9XGH7|PP2A_TOBAC (e_value=0.0) Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G58500.1 (e_value=0.0) | Symbols: PP2A-4 | protein phosphatase 2A-4 | chr3:21635503-21638911 REVERSE LENGTH=313;; (*ITAG) Solyc01g005950.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:617606-624776 transcript_region:SL2.40ch01:617606..624776- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9GY91_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00009650g0013.1 protein AED:0.50 eAED:0.50 QI:0|0|0|0.5|1|1|2|0|142; (*ITAG) Solyc01g100020.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00001469g0027.1 protein AED:0.08 eAED:0.17 QI:0|0|0|1|0|0.25|4|0|317; (*GB) gi|57013892|ref|YP_173366.1| (e_value=0.0) apocytochrome b [Nicotiana tabacum];; (*SWP) sp|P42792|CYB_ARATH (e_value=5e-179) Cytochrome b OS=Arabidopsis thaliana GN=MT-CYB PE=2 SV=2;; (*ITAG) ATMG00220.1 (e_value=0.0) | Symbols: COB | apocytochrome b | chrM:60235-61416 FORWARD LENGTH=393;; (*ITAG) Solyc09g050020.1.1 (e_value=5e-156) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32149081-32150223 transcript_region:SL2.40ch09:32149081..32150223- go_terms:GO:0008121 functional_description:"Cytochrome b (AHRD V1 **** Q95871_TOBAC); contains Interpro domain(s) IPR016175 Cytochrome b/b6 "; GO:0008121 NbS00001469g0011.1 protein AED:0.77 eAED:0.81 QI:0|0|0|1|1|1|2|0|95 NbS00001469g0004.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|205; (*GB) gi|255590333|ref|XP_002535241.1| (e_value=2e-98) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G68390.1 (e_value=3e-85) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:25642838-25645484 FORWARD LENGTH=408;; (*ITAG) Solyc12g036400.1.1 (e_value=1e-137) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30960699-30962488 transcript_region:SL2.40ch12:30960699..30962488- functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 *-*- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00001469g0028.1 protein AED:0.33 eAED:0.44 QI:0|0|0|1|0|0|3|0|169; (*GB) gi|11466011|ref|NP_054553.1| (e_value=3e-45) hypothetical protein NitaCp079 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=2e-40) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) ATCG01000.1 (e_value=5e-24) | Symbols: YCF1.1 | Ycf1 protein | chrC:109405-110436 FORWARD LENGTH=343;; (*ITAG) Solyc11g021310.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00001469g0026.1 protein AED:0.48 eAED:0.66 QI:0|0|0|0.66|0|0|3|0|164; (*GB) gi|323649881|ref|YP_004237246.1| (e_value=7e-44) NADH dehydrogenase subunit 1 (mitochondrion) [Ricinus communis];; (*SWP) sp|Q01300|NU1M_PETHY (e_value=3e-44) NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida GN=ND1 PE=3 SV=1;; (*ITAG) ATMG01275.1 (e_value=3e-44) | Symbols: NAD1A, NAD1, ND1 | NADH dehydrogenase 1A | chrM:318004-318390 REVERSE LENGTH=325; NbS00001469g0022.1 protein AED:0.14 eAED:0.14 QI:0|0|0|1|0|0|2|0|162; (*GB) gi|377657617|gb|AFB74242.1| (e_value=1e-20) photosystem I p700 apoprotein A1, partial (chloroplast) [Portulacaria afra];; (*SWP) sp|Q09MH8|PSAA_CITSI (e_value=1e-21) Photosystem I P700 chlorophyll a apoprotein A1 OS=Citrus sinensis GN=psaA PE=3 SV=1;; (*ITAG) ATCG00350.1 (e_value=1e-22) | Symbols: PSAA | Photosystem I, PsaA/PsaB protein | chrC:39605-41857 REVERSE LENGTH=750;; (*ITAG) Solyc06g009940.1.1 (e_value=7e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4357355-4357573 transcript_region:SL2.40ch06:4357355..4357573- go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A1 (AHRD V1 ***- D3WE64_9MAGN); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00001469g0023.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0|2|0|128; (*GB) gi|57013895|ref|YP_173369.1| (e_value=2e-78) ribosomal protein L5 [Nicotiana tabacum];; (*SWP) sp|P51409|RM05_SOLTU (e_value=2e-71) 60S ribosomal protein L5, mitochondrial OS=Solanum tuberosum GN=RPL5 PE=2 SV=2;; (*ITAG) ATMG00210.1 (e_value=4e-72) | Symbols: RPL5 | ribosomal protein L5 | chrM:57774-58331 FORWARD LENGTH=185;; (*ITAG) Solyc07g040970.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:48558944-48559501 transcript_region:SL2.40ch07:48558944..48559501+ go_terms:GO:0005840 functional_description:"Ribosomal protein L5 (AHRD V1 *-*- Q70G83_SOLCO); contains Interpro domain(s) IPR002132 Ribosomal protein L5 "; GO:0005840 NbS00001469g0025.1 protein AED:0.37 eAED:0.37 QI:0|0|0|1|0|0|2|0|115; (*GB) gi|57013893|ref|YP_173367.1| (e_value=1e-56) ribosomal protein S14 [Nicotiana tabacum];; (*SWP) sp|P05716|RT14_VICFA (e_value=3e-20) Ribosomal protein S14, mitochondrial OS=Vicia faba GN=RPS14 PE=3 SV=2;; (*TAIR) AT2G34520.1 (e_value=1e-14) | Symbols: RPS14 | mitochondrial ribosomal protein S14 | chr2:14548218-14548712 REVERSE LENGTH=164;; (*ITAG) Solyc04g079380.1.1 (e_value=5e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:61492407-61492733 transcript_region:SL2.40ch04:61492407..61492733+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S14 (AHRD V1 ***- A3VT32_9PROT); contains Interpro domain(s) IPR001209 Ribosomal protein S14 "; GO:0003735,GO:0005515 NbS00001469g0024.1 protein AED:0.69 eAED:0.80 QI:0|0|0|0.5|0|0|2|0|94 NbS00046824g0001.1 protein AED:0.20 eAED:0.20 QI:0|0.66|0|1|1|1|4|0|367; (*GB) gi|77416931|gb|ABA81861.1| (e_value=0.0) UDP-glucose:protein transglucosylase-like [Solanum tuberosum];; (*SWP) sp|Q8RU27|UPTG2_SOLTU (e_value=0.0) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1;; (*TAIR) AT5G15650.1 (e_value=0.0) | Symbols: RGP2, ATRGP2 | reversibly glycosylated polypeptide 2 | chr5:5092203-5094093 FORWARD LENGTH=360;; (*ITAG) Solyc05g012070.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5295089-5298245 transcript_region:SL2.40ch05:5295089..5298245- go_terms:GO:0016760 functional_description:"Alpha-1 4-glucan-protein synthase (AHRD V1 **-* B9RLK7_RICCO); contains Interpro domain(s) IPR004901 Alpha-1,4-glucan-protein synthase, UDP-forming "; GO:0016760 NbS00046824g0004.1 protein AED:0.44 eAED:0.66 QI:21|0|0|1|0|0|2|0|53 NbS00006782g0004.1 protein AED:0.05 eAED:0.05 QI:0|1|0.5|1|0.33|0.75|4|211|212; (*GB) gi|224110250|ref|XP_002315460.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJ17|DI197_ARATH (e_value=3e-61) Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2;; (*TAIR) AT5G49230.1 (e_value=3e-62) | Symbols: HRB1 | Drought-responsive family protein | chr5:19959048-19960422 REVERSE LENGTH=211;; (*ITAG) Solyc12g099390.1.1 (e_value=6e-106) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64896906-64901697 transcript_region:SL2.40ch12:64896906..64901697+ functional_description:"Protein DEHYDRATION-INDUCED 19 homolog 4 (AHRD V1 ***- DI194_ARATH); contains Interpro domain(s) IPR008598 Drought induced 19 "; NbS00025183g0010.1 protein AED:0.06 eAED:0.06 QI:0|1|1|1|0.66|0.85|7|82|675; (*GB) gi|126567465|dbj|BAF48331.1| (e_value=0.0) putative yellow stripe-like protein [Nicotiana tabacum];; (*SWP) sp|Q6R3K9|YSL2_ARATH (e_value=0.0) Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1;; (*TAIR) AT5G24380.1 (e_value=0.0) | Symbols: YSL2, ATYSL2 | YELLOW STRIPE like 2 | chr5:8324098-8326525 FORWARD LENGTH=664;; (*ITAG) Solyc03g082620.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46082668-46086918 transcript_region:SL2.40ch03:46082668..46086918- go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00025183g0014.1 protein AED:0.45 eAED:0.45 QI:0|0.33|0|0.75|0.33|0.25|4|0|135; (*GB) gi|351726704|ref|NP_001235088.1| (e_value=3e-66) uncharacterized protein LOC100305929 [Glycine max];; (*SWP) sp|Q42342|CYB51_ARATH (e_value=8e-62) Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=1 SV=2;; (*TAIR) AT5G53560.1 (e_value=6e-63) | Symbols: ATB5-A, B5 #2, ATCB5-E, CB5-E | cytochrome B5 isoform E | chr5:21759628-21760353 FORWARD LENGTH=134;; (*ITAG) Solyc03g082600.2.1 (e_value=1e-71) genomic_reference:SL2.40ch03 gene_region:46071440-46075109 transcript_region:SL2.40ch03:46071440..46075109- go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** A5Z1Y7_MALDO); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00025183g0002.1 protein AED:0.04 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|201; (*GB) gi|147765904|emb|CAN77892.1| (e_value=1e-31) hypothetical protein VITISV_016272 [Vitis vinifera];; (*ITAG) Solyc03g082610.1.1 (e_value=2e-89) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:46079272-46079895 transcript_region:SL2.40ch03:46079272..46079895+ functional_description:"Arabidopsis thaliana genomic DNA chromosome 5 P1 clone MOK16 (AHRD V1 *--- Q9LYW2_ARATH); contains Interpro domain(s) IPR007608 Protein of unknown function DUF584 "; NbS00025183g0015.1 protein AED:0.20 eAED:0.20 QI:0|0.33|0.5|1|0.66|0.5|4|555|522; (*GB) gi|225455270|ref|XP_002273781.1| (e_value=0.0) PREDICTED: small G protein signaling modulator 2-like isoform 3 [Vitis vinifera];; (*SWP) sp|P09379|GYP7_YARLI (e_value=4e-21) GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2;; (*TAIR) AT3G49350.1 (e_value=9e-170) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539;; (*ITAG) Solyc03g082590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46063003-46070268 transcript_region:SL2.40ch03:46063003..46070268+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00028437g0002.1 protein AED:0.38 eAED:0.38 QI:217|1|1|1|1|1|2|286|71; (*ITAG) Solyc08g008230.2.1 (e_value=7e-27) genomic_reference:SL2.40ch08 gene_region:2672633-2674787 transcript_region:SL2.40ch08:2672633..2674787- go_terms:GO:0005160 functional_description:"Arabinogalactan peptide 22 (AHRD V1 ***- AGP22_ARATH); contains Interpro domain(s) IPR009424 Protein of unknown function DUF1070 "; GO:0005160 NbS00011104g0008.1 protein AED:0.27 eAED:0.28 QI:0|0.5|0|1|0|0.33|3|0|161; (*GB) gi|225447803|ref|XP_002266820.1| (e_value=9e-62) PREDICTED: NAC domain-containing protein 68 [Vitis vinifera];; (*TAIR) AT5G64530.1 (e_value=2e-57) | Symbols: ANAC104, XND1 | xylem NAC domain 1 | chr5:25795360-25796699 FORWARD LENGTH=187;; (*ITAG) Solyc01g104900.2.1 (e_value=3e-60) genomic_reference:SL2.40ch01 gene_region:84978258-84979448 transcript_region:SL2.40ch01:84978258..84979448- go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9GZS1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00011104g0007.1 protein AED:0.25 eAED:0.43 QI:0|0|0.25|1|1|1|4|261|146 NbS00056461g0009.1 protein AED:0.20 eAED:0.21 QI:0|0|0|0.75|0.66|0.5|4|0|530; (*GB) gi|255548421|ref|XP_002515267.1| (e_value=0.0) hypothetical protein RCOM_1346600 [Ricinus communis];; (*SWP) sp|O22907|RH24_ARATH (e_value=0.0) DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2;; (*TAIR) AT2G47330.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:19429083-19431617 REVERSE LENGTH=760;; (*ITAG) Solyc01g079330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:70909331-70918655 transcript_region:SL2.40ch01:70909331..70918655- go_terms:GO:0005515 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00030134g0011.1 protein AED:0.28 eAED:0.28 QI:0|1|1|1|0.92|0.85|14|330|582; (*GB) gi|356516321|ref|XP_003526844.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100802446 [Glycine max];; (*SWP) sp|Q5RC80|RBM39_PONAB (e_value=3e-79) RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1;; (*TAIR) AT5G09880.1 (e_value=0.0) | Symbols: | Splicing factor, CC1-like | chr5:3081646-3085179 REVERSE LENGTH=527;; (*ITAG) Solyc11g005170.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:147568-156637 transcript_region:SL2.40ch11:147568..156637+ go_terms:GO:0003676,GO:0005634,GO:0000166 functional_description:"RNA splicing factor (AHRD V1 **-- C5JY77_AJEDS); contains Interpro domain(s) IPR006509 Splicing factor, CC1-like "; GO:0003676,GO:0005634,GO:0000166 NbS00030134g0014.1 protein AED:0.33 eAED:0.36 QI:0|0|0|0.75|0.66|0.5|4|0|170; (*ITAG) Solyc11g005240.1.1 (e_value=3e-42) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:197404-200197 transcript_region:SL2.40ch11:197404..200197- go_terms:GO:0003676 functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 *--- D7MSG2_ARALY); contains Interpro domain(s) IPR012942 SRR1 "; GO:0003676 NbS00030134g0004.1 protein AED:0.58 eAED:0.58 QI:0|0|0|0.33|1|1|3|0|80; (*ITAG) Solyc11g005240.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:197404-200197 transcript_region:SL2.40ch11:197404..200197- go_terms:GO:0003676 functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 *--- D7MSG2_ARALY); contains Interpro domain(s) IPR012942 SRR1 "; GO:0003676 NbS00037595g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|209; (*GB) gi|297816726|ref|XP_002876246.1| (e_value=4e-56) hypothetical protein ARALYDRAFT_485817 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G54200.1 (e_value=2e-44) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:20065731-20066438 FORWARD LENGTH=235;; (*ITAG) Solyc09g031920.1.1 (e_value=5e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch09 gene_region:24061911-24062513 transcript_region:SL2.40ch09:24061911..24062513- functional_description:"Harpin-induced 1 (AHRD V1 ***- Q1STP6_MEDTR); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbC25262916g0001.1 protein AED:0.18 eAED:0.18 QI:0|-1|0|1|-1|1|1|0|174; (*GB) gi|255573495|ref|XP_002527673.1| (e_value=7e-31) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g076870.1.1 (e_value=2e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:57959724-57960461 transcript_region:SL2.40ch08:57959724..57960461+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002196g0001.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|4|489|129; (*GB) gi|297741602|emb|CBI32734.3| (e_value=9e-19) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37195.1 (e_value=5e-17) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15620370-15621464 FORWARD LENGTH=133;; (*ITAG) Solyc09g007800.2.1 (e_value=3e-32) genomic_reference:SL2.40ch09 gene_region:1320514-1324720 transcript_region:SL2.40ch09:1320514..1324720+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003569g0001.1 protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|0|0|2|521|311; (*GB) gi|71067060|dbj|BAE16282.1| (e_value=5e-153) StPCL1 [Solanum tuberosum];; (*SWP) sp|Q940D0|ARR1_ARATH (e_value=2e-19) Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2;; (*TAIR) AT3G46640.2 (e_value=9e-70) | Symbols: PCL1 | Homeodomain-like superfamily protein | chr3:17183248-17184219 FORWARD LENGTH=323;; (*ITAG) Solyc06g076350.2.1 (e_value=2e-160) genomic_reference:SL2.40ch06 gene_region:43828645-43831301 transcript_region:SL2.40ch06:43828645..43831301+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *--* D6MKQ8_9ASPA); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00039951g0012.1 protein AED:0.40 eAED:0.85 QI:0|0|0|1|0|0.5|2|0|361; (*GB) gi|296090345|emb|CBI40164.3| (e_value=3e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=2e-21) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=2e-22) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc07g047760.1.1 (e_value=3e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:56280409-56281866 transcript_region:SL2.40ch07:56280409..56281866- functional_description:"F-box family protein (AHRD V1 ***- B9GFB6_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00039951g0014.1 protein AED:0.15 eAED:0.24 QI:179|0.75|0.44|1|0.37|0.33|9|0|411; (*GB) gi|225446088|ref|XP_002269975.1| (e_value=1e-103) PREDICTED: uncharacterized protein LOC100259875 [Vitis vinifera];; (*TAIR) AT5G09390.2 (e_value=2e-71) | Symbols: | CD2-binding protein-related | chr5:2913591-2915803 FORWARD LENGTH=349;; (*ITAG) Solyc04g009060.2.1 (e_value=1e-179) genomic_reference:SL2.40ch04 gene_region:2618806-2627468 transcript_region:SL2.40ch04:2618806..2627468- functional_description:"CD2 antigen cytoplasmic tail-binding protein 2 (AHRD V1 *--- C1BIJ4_OSMMO)"; NbS00024746g0005.1 protein AED:0.34 eAED:0.36 QI:388|0.83|0.57|1|0.33|0.42|7|0|597; (*GB) gi|224138216|ref|XP_002326547.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RY59|RCD1_ARATH (e_value=3e-136) Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1;; (*TAIR) AT1G32230.3 (e_value=3e-138) | Symbols: AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615748 FORWARD LENGTH=570;; (*ITAG) Solyc08g005270.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:192513-198421 transcript_region:SL2.40ch08:192513..198421- go_terms:GO:0003950 functional_description:"Poly polymerase catalytic domain containing protein expressed (AHRD V1 **-- Q84T80_ORYSJ); contains Interpro domain(s) IPR012317 Poly(ADP-ribose) polymerase, catalytic region "; GO:0003950 NbS00002558g0001.1 protein AED:0.46 eAED:0.46 QI:0|0.71|0.62|0.87|1|1|8|0|198; (*GB) gi|225429234|ref|XP_002264051.1| (e_value=1e-113) PREDICTED: mitochondrial import receptor subunit TOM40 homolog 1 [Vitis vinifera];; (*SWP) sp|Q9LHE5|TO401_ARATH (e_value=2e-87) Mitochondrial import receptor subunit TOM40 homolog 1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3;; (*TAIR) AT3G20000.1 (e_value=1e-88) | Symbols: TOM40 | translocase of the outer mitochondrial membrane 40 | chr3:6967685-6970247 FORWARD LENGTH=309;; (*ITAG) Solyc06g007710.2.1 (e_value=1e-123) genomic_reference:SL2.40ch06 gene_region:1692886-1704358 transcript_region:SL2.40ch06:1692886..1704358+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM40 (AHRD V1 ***- B6TEP3_MAIZE); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0015450 NbS00015385g0019.1 protein AED:0.13 eAED:0.17 QI:436|0.7|0.81|1|0.4|0.45|11|200|443; (*GB) gi|359483524|ref|XP_002266564.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266871 [Vitis vinifera];; (*SWP) sp|O14162|YE7A_SCHPO (e_value=1e-11) Putative lipase C4A8.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.10 PE=2 SV=2;; (*TAIR) AT1G29120.2 (e_value=1e-176) | Symbols: | Hydrolase-like protein family | chr1:10174481-10178143 FORWARD LENGTH=455;; (*ITAG) Solyc02g076870.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:36561133-36572505 transcript_region:SL2.40ch02:36561133..36572505+ functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; NbS00015385g0020.1 protein AED:0.08 eAED:0.08 QI:5|1|1|1|1|1|5|490|259; (*GB) gi|88910037|gb|ABD57972.1| (e_value=2e-155) eukaryotic translation initiation factor 4E [Nicotiana benthamiana];; (*SWP) sp|P48599|IF4E1_ORYSJ (e_value=1e-109) Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica GN=Os01g0970400 PE=2 SV=1;; (*TAIR) AT4G18040.1 (e_value=9e-106) | Symbols: EIF4E, CUM1, AT.EIF4E1, eIF4E1 | eukaryotic translation initiation factor 4E | chr4:10016724-10018151 REVERSE LENGTH=235;; (*ITAG) Solyc03g005870.2.1 (e_value=2e-115) genomic_reference:SL2.40ch03 gene_region:590058-593520 transcript_region:SL2.40ch03:590058..593520+ go_terms:GO:0000340 functional_description:"Eukaryotic translation initiation factor 4E (AHRD V1 ***- Q199B8_SOLLC); contains Interpro domain(s) IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) "; GO:0000340 NbS00015385g0024.1 protein AED:0.11 eAED:0.14 QI:0|0|0|1|0|0.4|5|0|840; (*GB) gi|359477011|ref|XP_002262677.2| (e_value=0.0) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=8e-175) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=6e-176) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc02g021410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:13316497-13319526 transcript_region:SL2.40ch02:13316497..13319526+ go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00015385g0007.1 protein AED:0.24 eAED:0.24 QI:0|0.66|0.25|0.75|1|1|4|470|69; (*GB) gi|388493376|gb|AFK34754.1| (e_value=8e-22) unknown [Lotus japonicus];; (*TAIR) AT1G29850.1 (e_value=2e-20) | Symbols: | double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129;; (*ITAG) Solyc02g071150.2.1 (e_value=5e-24) genomic_reference:SL2.40ch02 gene_region:35217704-35225700 transcript_region:SL2.40ch02:35217704..35225700- go_terms:GO:0005515,GO:0003690 functional_description:"DNA-binding protein (AHRD V1 **** B7R4T4_9EURY); contains Interpro domain(s) IPR002836 DNA-binding TFAR19-related protein "; GO:0005515,GO:0003690 NbS00005010g0013.1 protein AED:0.17 eAED:0.17 QI:86|1|1|1|0.5|0.66|3|346|240; (*GB) gi|296084249|emb|CBI24637.3| (e_value=1e-99) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STF9|PP266_ARATH (e_value=3e-27) Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1;; (*TAIR) AT3G46870.1 (e_value=3e-28) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17263011-17264022 FORWARD LENGTH=257;; (*ITAG) Solyc11g045220.1.1 (e_value=8e-139) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:36980354-36988535 transcript_region:SL2.40ch11:36980354..36988535- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LN61_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005010g0001.1 protein AED:0.12 eAED:0.12 QI:850|1|0.8|1|1|1|5|0|1000; (*GB) gi|255578890|ref|XP_002530298.1| (e_value=0.0) transcription factor, putative [Ricinus communis];; (*SWP) sp|O22864|NLP8_ARATH (e_value=0.0) Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1;; (*TAIR) AT2G43500.2 (e_value=0.0) | Symbols: | Plant regulator RWP-RK family protein | chr2:18062715-18066450 FORWARD LENGTH=947;; (*ITAG) Solyc11g045350.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37656830-37662843 transcript_region:SL2.40ch11:37656830..37662843+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- B4ER14_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00005010g0012.1 protein AED:0.21 eAED:0.21 QI:0|0.8|0.66|1|0.6|0.83|6|0|273; (*GB) gi|255578898|ref|XP_002530302.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9NU19|TB22B_HUMAN (e_value=8e-88) TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3;; (*TAIR) AT2G30710.1 (e_value=2e-175) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:13086147-13088991 REVERSE LENGTH=440;; (*ITAG) Solyc11g005010.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:15822-26251 transcript_region:SL2.40ch11:15822..26251- go_terms:GO:0005096,GO:0042803 functional_description:"TBC1 domain family member 13 (AHRD V1 *--- TBC13_MOUSE); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005096,GO:0042803 NbS00042675g0007.1 protein AED:0.20 eAED:0.20 QI:588|0.88|0.9|1|0.33|0.5|10|203|825; (*GB) gi|359473366|ref|XP_002273996.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250008 [Vitis vinifera];; (*SWP) sp|Q15751|HERC1_HUMAN (e_value=4e-52) Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2;; (*TAIR) AT5G19420.1 (e_value=0.0) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552866 REVERSE LENGTH=1105;; (*ITAG) Solyc03g116360.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59885244-59893377 transcript_region:SL2.40ch03:59885244..59893377+ go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00007805g0004.1 protein AED:0.35 eAED:0.35 QI:0|-1|0|1|-1|1|1|0|74; (*ITAG) Solyc08g076230.1.1 (e_value=2e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch08 gene_region:57411107-57411766 transcript_region:SL2.40ch08:57411107..57411766- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 *-*- D7LHX4_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00007805g0017.1 protein AED:0.20 eAED:0.20 QI:0|1|0.6|1|1|1|5|0|406; (*GB) gi|255555933|ref|XP_002519002.1| (e_value=0.0) phosphoribulose kinase, putative [Ricinus communis];; (*SWP) sp|P26302|KPPR_WHEAT (e_value=0.0) Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT1G32060.1 (e_value=0.0) | Symbols: PRK | phosphoribulokinase | chr1:11532668-11534406 FORWARD LENGTH=395;; (*ITAG) Solyc08g076220.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57405726-57410850 transcript_region:SL2.40ch08:57405726..57410850+ go_terms:GO:0005515 functional_description:"Phosphoribulokinase/uridine kinase (AHRD V1 ***- B7KI62_CYAP7); contains Interpro domain(s) IPR006083 Phosphoribulokinase/uridine kinase "; GO:0005515 NbS00007805g0016.1 protein AED:0.32 eAED:0.32 QI:200|0.9|0.81|1|0.5|0.54|11|365|682; (*GB) gi|255555927|ref|XP_002518999.1| (e_value=1e-108) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G45610.1 (e_value=1e-82) | Symbols: SUV2 | protein dimerizations | chr5:18496397-18499673 REVERSE LENGTH=646;; (*ITAG) Solyc08g076190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57373395-57383126 transcript_region:SL2.40ch08:57373395..57383126+ functional_description:"Genomic DNA chromosome 5 P1 clone MRA19 (AHRD V1 *--- Q9FK80_ARATH)"; NbS00038241g0003.1 protein AED:0.14 eAED:0.15 QI:56|1|0.5|1|1|1|2|0|350; (*GB) gi|255585128|ref|XP_002533269.1| (e_value=2e-129) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G23790.1 (e_value=1e-114) | Symbols: | Protein of unknown function (DUF607) | chr2:10125692-10127455 REVERSE LENGTH=336;; (*ITAG) Solyc02g065550.2.1 (e_value=5e-133) genomic_reference:SL2.40ch02 gene_region:31286098-31288095 transcript_region:SL2.40ch02:31286098..31288095- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbS00003108g0003.1 protein AED:0.25 eAED:0.25 QI:24|1|0.83|1|1|1|6|23|383; (*GB) gi|225427118|ref|XP_002276932.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266131 [Vitis vinifera];; (*SWP) sp|Q9STM3|REF6_ARATH (e_value=7e-57) Lysine-specific demethylase REF6 OS=Arabidopsis thaliana GN=REF6 PE=1 SV=1;; (*TAIR) AT5G46910.1 (e_value=0.0) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr5:19046888-19050880 FORWARD LENGTH=787;; (*ITAG) Solyc08g005240.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:162861-166485 transcript_region:SL2.40ch08:162861..166485+ go_terms:GO:0034647,GO:0034648 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--* KDM5B_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0034647,GO:0034648 NbS00015441g0009.1 protein AED:0.26 eAED:0.26 QI:0|1|0.8|1|0.75|0.8|5|0|502; (*GB) gi|225429414|ref|XP_002275831.1| (e_value=1e-151) PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera];; (*SWP) sp|P26683|RPOD_NOSS1 (e_value=6e-44) RNA polymerase sigma factor rpoD OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpoD PE=3 SV=1;; (*TAIR) AT3G53920.1 (e_value=2e-122) | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C | chr3:19961041-19963820 REVERSE LENGTH=571;; (*ITAG) Solyc08g065970.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:51578807-51584159 transcript_region:SL2.40ch08:51578807..51584159+ go_terms:GO:0003899,GO:0003677 functional_description:"RNA polymerase sigma-70 factor (AHRD V1 **** D7LJA3_ARALY); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 "; GO:0003899,GO:0003677 NbS00015441g0010.1 protein AED:0.46 eAED:0.46 QI:0|1|0.5|1|0|0|2|146|93 NbS00025698g0007.1 protein AED:0.29 eAED:0.31 QI:0|0.63|0.58|1|0.72|0.75|12|0|398; (*GB) gi|297733762|emb|CBI15009.3| (e_value=1e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|O00566|MPP10_HUMAN (e_value=3e-44) U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens GN=MPHOSPH10 PE=1 SV=2;; (*TAIR) AT5G66540.1 (e_value=1e-106) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26556653-26559310 REVERSE LENGTH=524;; (*ITAG) Solyc03g112820.2.1 (e_value=8e-146) genomic_reference:SL2.40ch03 gene_region:57183847-57188738 transcript_region:SL2.40ch03:57183847..57188738- go_terms:GO:0030529 functional_description:"U3 small nucleolar ribonucleoprotein protein MPP10 (AHRD V1 *-*- B0WQ74_CULQU); contains Interpro domain(s) IPR012173 U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p "; GO:0030529 NbS00025698g0003.1 protein AED:0.37 eAED:0.56 QI:0|0|0|0.66|1|1|3|0|118 NbS00035286g0004.1 protein AED:0.17 eAED:0.18 QI:770|0.87|0.77|1|0.87|0.88|9|0|1077; (*GB) gi|296084430|emb|CBI24989.3| (e_value=6e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10650.1 (e_value=2e-47) | Symbols: | BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | chr3:3325562-3330819 REVERSE LENGTH=1309;; (*ITAG) Solyc11g006390.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1091517-1101108 transcript_region:SL2.40ch11:1091517..1101108+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018891g0004.1 protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|421; (*GB) gi|255538000|ref|XP_002510065.1| (e_value=5e-140) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SY57|P2A10_ARATH (e_value=5e-120) Protein PHLOEM PROTEIN 2-LIKE A10 OS=Arabidopsis thaliana GN=PP2A10 PE=2 SV=1;; (*TAIR) AT1G10150.1 (e_value=4e-121) | Symbols: | Carbohydrate-binding protein | chr1:3326160-3327404 FORWARD LENGTH=414;; (*ITAG) Solyc02g092140.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47909832-47911085 transcript_region:SL2.40ch02:47909832..47911085- functional_description:"Phloem protein (Fragment) (AHRD V1 *--- C6FDA1_PSEMZ)"; NbS00018891g0013.1 protein AED:0.37 eAED:0.37 QI:0|1|0.66|1|1|0.66|3|0|471; (*GB) gi|255568653|ref|XP_002525300.1| (e_value=8e-138) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G49800.1 (e_value=5e-87) | Symbols: | BSD domain-containing protein | chr3:18471957-18473676 REVERSE LENGTH=428;; (*ITAG) Solyc02g092160.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47921198-47925383 transcript_region:SL2.40ch02:47921198..47925383- functional_description:"BSD domain containing protein (AHRD V1 ***- B6TCH2_MAIZE); contains Interpro domain(s) IPR005607 BSD "; NbS00018891g0012.1 protein AED:0.05 eAED:0.05 QI:603|1|1|1|0.85|0.75|8|354|486; (*GB) gi|255568655|ref|XP_002525301.1| (e_value=0.0) amino acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G65890.1 (e_value=1e-172) | Symbols: ACR1 | ACT domain repeat 1 | chr5:26355701-26357721 FORWARD LENGTH=477;; (*ITAG) Solyc02g092150.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47916905-47921054 transcript_region:SL2.40ch02:47916905..47921054+ go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00014369g0007.1 protein AED:0.15 eAED:0.15 QI:257|1|1|1|0.77|0.7|10|249|418; (*GB) gi|334683129|emb|CBX87930.1| (e_value=0.0) equilibrative nucleoside transporter 3 [Solanum tuberosum];; (*TAIR) AT4G05120.1 (e_value=0.0) | Symbols: ENT3, FUR1, ATENT3 | Major facilitator superfamily protein | chr4:2632886-2634824 REVERSE LENGTH=418;; (*ITAG) Solyc02g014430.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:7760649-7762916 transcript_region:SL2.40ch02:7760649..7762916- go_terms:GO:0005337 functional_description:"Equilibrative nucleoside transporter (AHRD V1 **** B9H200_POPTR); contains Interpro domain(s) IPR002259 Delayed-early response protein/equilibrative nucleoside transporter "; GO:0005337 NbS00014369g0008.1 protein AED:0.24 eAED:0.24 QI:0|1|1|1|0.8|0.66|6|389|383; (*GB) gi|225453718|ref|XP_002271651.1| (e_value=6e-147) PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=1e-111) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT3G61180.1 (e_value=2e-114) | Symbols: | RING/U-box superfamily protein | chr3:22645680-22647290 FORWARD LENGTH=379;; (*ITAG) Solyc01g091600.2.1 (e_value=3e-162) genomic_reference:SL2.40ch01 gene_region:76945255-76949653 transcript_region:SL2.40ch01:76945255..76949653- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 *-*- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00042381g0004.1 protein AED:0.11 eAED:0.17 QI:30|0.4|0.5|1|0.4|0.5|6|0|344; (*GB) gi|224106812|ref|XP_002314293.1| (e_value=5e-147) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60720.1 (e_value=4e-118) | Symbols: | Protein of unknown function, DUF547 | chr5:24418436-24422177 REVERSE LENGTH=691;; (*ITAG) Solyc11g069840.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51553588-51559860 transcript_region:SL2.40ch11:51553588..51559860+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00016869g0001.1 protein AED:0.29 eAED:0.29 QI:0|-1|0|1|-1|1|1|0|111; (*ITAG) Solyc01g089860.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:75357707-75358617 transcript_region:SL2.40ch01:75357707..75358617- functional_description:"Unknown Protein (AHRD V1)"; NbS00030043g0008.1 protein AED:0.29 eAED:0.29 QI:454|0.94|0.95|1|0.84|0.8|20|104|560; (*GB) gi|255542698|ref|XP_002512412.1| (e_value=0.0) acyl-CoA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=0.0) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT3G05420.1 (e_value=0.0) | Symbols: ACBP4 | acyl-CoA binding protein 4 | chr3:1561880-1567047 FORWARD LENGTH=668;; (*ITAG) Solyc01g099350.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81389905-81403291 transcript_region:SL2.40ch01:81389905..81403291+ go_terms:GO:0000062 functional_description:"Acyl-CoA binding protein 4 acyl-CoA-binding domain 4 (AHRD V1 **-* D7L3U2_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0000062 NbS00048568g0014.1 protein AED:0.20 eAED:0.20 QI:262|0.75|0.8|1|0.75|0.8|5|731|306; (*GB) gi|255564615|ref|XP_002523302.1| (e_value=3e-46) kinase, putative [Ricinus communis];; (*SWP) sp|Q8S8Y8|WNK6_ARATH (e_value=6e-43) Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1;; (*TAIR) AT3G18750.2 (e_value=2e-44) | Symbols: WNK6, ZIK5 | with no lysine (K) kinase 6 | chr3:6454307-6456830 REVERSE LENGTH=500;; (*ITAG) Solyc01g096170.2.1 (e_value=4e-83) genomic_reference:SL2.40ch01 gene_region:79028423-79033644 transcript_region:SL2.40ch01:79028423..79033644+ go_terms:GO:0004672 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00048568g0017.1 protein AED:0.08 eAED:0.08 QI:292|1|1|1|0.75|0.55|9|263|1075; (*GB) gi|225470962|ref|XP_002264541.1| (e_value=0.0) PREDICTED: bifunctional fucokinase/fucose pyrophosphorylase-like [Vitis vinifera];; (*SWP) sp|Q9LNJ9|FKGP_ARATH (e_value=0.0) Bifunctional fucokinase/fucose pyrophosphorylase OS=Arabidopsis thaliana GN=FKGP PE=1 SV=2;; (*TAIR) AT1G01220.1 (e_value=0.0) | Symbols: FKGP, AtFKGP | L-fucokinase/GDP-L-fucose pyrophosphorylase | chr1:91750-95552 FORWARD LENGTH=1055;; (*ITAG) Solyc01g096160.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79020486-79027406 transcript_region:SL2.40ch01:79020486..79027406- go_terms:GO:0016310,GO:0005737 functional_description:"Predicted kinase (AHRD V1 *-*- Q2W8E8_MAGSA); contains Interpro domain(s) IPR012887 L-fucokinase "; GO:0016310,GO:0005737 NbS00048568g0015.1 protein AED:0.32 eAED:0.32 QI:0|1|0.5|1|0|0.5|2|0|98; (*GB) gi|255564619|ref|XP_002523304.1| (e_value=8e-41) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G01225.1 (e_value=1e-35) | Symbols: | NC domain-containing protein-related | chr1:96064-97242 FORWARD LENGTH=260;; (*ITAG) Solyc01g096150.2.1 (e_value=3e-57) genomic_reference:SL2.40ch01 gene_region:79016704-79020072 transcript_region:SL2.40ch01:79016704..79020072- go_terms:GO:0006468 functional_description:"NC domain-containing protein (AHRD V1 **-- A6MD14_9ORYZ); contains Interpro domain(s) IPR007053 NC "; GO:0006468 NbS00014071g0008.1 protein AED:0.09 eAED:0.09 QI:0|0.66|0.5|1|0.66|0.5|4|176|339; (*GB) gi|85376265|gb|ABC70328.1| (e_value=1e-57) agglutinin isoform [Castanea crenata];; (*SWP) sp|P82859|LECA_CASCR (e_value=7e-59) Agglutinin OS=Castanea crenata PE=1 SV=1;; (*TAIR) AT1G19715.1 (e_value=2e-40) | Symbols: | Mannose-binding lectin superfamily protein | chr1:6816934-6819432 REVERSE LENGTH=595;; (*ITAG) Solyc04g080420.2.1 (e_value=4e-165) genomic_reference:SL2.40ch04 gene_region:62186583-62188782 transcript_region:SL2.40ch04:62186583..62188782- functional_description:"Myrosinase binding protein (AHRD V1 **-- P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00014071g0007.1 protein AED:0.16 eAED:0.16 QI:358|0.66|0.25|1|0.66|1|4|0|309; (*GB) gi|225458281|ref|XP_002281422.1| (e_value=5e-107) PREDICTED: cytosolic purine 5'-nucleotidase [Vitis vinifera];; (*SWP) sp|Q3V1L4|5NTC_MOUSE (e_value=8e-21) Cytosolic purine 5'-nucleotidase OS=Mus musculus GN=Nt5c2 PE=1 SV=2;; (*TAIR) AT1G75210.1 (e_value=3e-104) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr1:28223990-28228751 FORWARD LENGTH=642;; (*ITAG) Solyc04g080430.2.1 (e_value=1e-167) genomic_reference:SL2.40ch04 gene_region:62193893-62203160 transcript_region:SL2.40ch04:62193893..62203160+ go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-Nucleotidase (AHRD V1 **** C1FIJ4_9CHLO); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00040381g0004.1 protein AED:0.39 eAED:0.39 QI:0|0|0|0.5|1|1|2|0|105; (*GB) gi|125582831|gb|EAZ23762.1| (e_value=4e-17) hypothetical protein OsJ_07469 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=9e-12) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=7e-13) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc03g117520.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60711082-60712938 transcript_region:SL2.40ch03:60711082..60712938+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00059998g0004.1 protein AED:0.32 eAED:0.33 QI:0|0.85|0.87|1|1|1|8|344|261; (*GB) gi|82621136|gb|ABB86256.1| (e_value=1e-147) eukaryotic translation initiation factor 2 beta subunit-like [Solanum tuberosum];; (*SWP) sp|O24473|IF2B_WHEAT (e_value=8e-128) Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1;; (*TAIR) AT5G20920.3 (e_value=8e-121) | Symbols: EIF2 BETA | eukaryotic translation initiation factor 2 beta subunit | chr5:7094994-7096661 REVERSE LENGTH=268;; (*ITAG) Solyc06g082580.2.1 (e_value=2e-149) genomic_reference:SL2.40ch06 gene_region:44640508-44646549 transcript_region:SL2.40ch06:44640508..44646549- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 beta subunit-like (AHRD V1 **** Q2V9B2_SOLTU); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0005515,GO:0003743 NbS00034675g0009.1 protein AED:0.00 eAED:0.00 QI:207|1|1|1|1|1|2|296|125; (*GB) gi|351727609|ref|NP_001235375.1| (e_value=8e-52) uncharacterized protein LOC100305948 precursor [Glycine max];; (*SWP) sp|P00303|BABL_CUCSA (e_value=2e-45) Basic blue protein OS=Cucumis sativus PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=1e-41) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104400.2.1 (e_value=5e-62) genomic_reference:SL2.40ch01 gene_region:84535674-84538317 transcript_region:SL2.40ch01:84535674..84538317- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00034675g0006.1 protein AED:0.16 eAED:0.16 QI:0|1|0.5|1|1|1|2|0|119; (*GB) gi|14164559|gb|AAK55122.1|AF172853_1 (e_value=5e-76) putative S-RNase binding protein p11 precursor [Nicotiana alata];; (*SWP) sp|P60496|BABL_LILLO (e_value=9e-37) Chemocyanin OS=Lilium longiflorum PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=3e-30) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104380.2.1 (e_value=6e-34) genomic_reference:SL2.40ch01 gene_region:84531235-84531812 transcript_region:SL2.40ch01:84531235..84531812+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- C7AE91_WHEAT); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00034675g0008.1 protein AED:0.03 eAED:0.04 QI:0|1|0|1|1|1|2|0|120; (*GB) gi|350535158|ref|NP_001234435.1| (e_value=2e-52) plantacyanin precursor [Solanum lycopersicum];; (*SWP) sp|P60496|BABL_LILLO (e_value=1e-27) Chemocyanin OS=Lilium longiflorum PE=1 SV=1;; (*TAIR) AT2G02850.1 (e_value=2e-27) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129;; (*ITAG) Solyc01g104390.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:84533973-84534423 transcript_region:SL2.40ch01:84533973..84534423+ go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6TT37_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00020260g0005.1 protein AED:0.14 eAED:0.14 QI:42|1|1|1|0|0.5|2|289|165; (*GB) gi|50402169|sp|Q93WP8.1|HSYA_TOBAC (e_value=1e-84) RecName: Full=Hydroxyproline-rich systemin A; Contains: RecName: Full=HypSysA I; AltName: Full=TobHypSysA I; Contains: RecName: Full=HypSysA II; AltName: Full=TobHypSysA II; Flags: Precursor;; (*SWP) sp|Q93WP8|HSYA_TOBAC (e_value=4e-86) Hydroxyproline-rich systemin A OS=Nicotiana tabacum PE=1 SV=1; NbS00002735g0004.1 protein AED:0.08 eAED:0.08 QI:75|0.5|0.8|1|0.5|0.6|5|165|311; (*GB) gi|359481589|ref|XP_002282804.2| (e_value=5e-165) PREDICTED: uncharacterized protein LOC100263058 [Vitis vinifera];; (*TAIR) AT2G36290.1 (e_value=5e-143) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:15208867-15210768 REVERSE LENGTH=364;; (*ITAG) Solyc09g009540.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:2948975-2953213 transcript_region:SL2.40ch09:2948975..2953213- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00018207g0006.1 protein AED:0.18 eAED:0.18 QI:0|1|1|1|0.88|0.94|18|215|739; (*GB) gi|225464483|ref|XP_002268591.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Vitis vinifera];; (*SWP) sp|Q9LKF9|CPSF2_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2;; (*TAIR) AT5G23880.1 (e_value=0.0) | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage and polyadenylation specificity factor 100 | chr5:8052550-8058147 FORWARD LENGTH=739;; (*ITAG) Solyc03g025540.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:7302412-7321563 transcript_region:SL2.40ch03:7302412..7321563- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 2 (AHRD V1 **-- C0HA24_SALSA); contains Interpro domain(s) IPR011108 RNA-metabolising metallo-beta-lactamase "; GO:0005515 NbS00003871g0008.1 protein AED:0.14 eAED:0.14 QI:213|0.82|0.61|1|0.82|0.77|18|0|1655; (*GB) gi|297746515|emb|CBI16571.3| (e_value=7e-106) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G55540.1 (e_value=6e-91) | Symbols: | Nuclear pore complex protein | chr1:20734759-20743049 REVERSE LENGTH=1816;; (*ITAG) Solyc02g032450.2.1 (e_value=6e-155) genomic_reference:SL2.40ch02 gene_region:19193309-19197354 transcript_region:SL2.40ch02:19193309..19197354- functional_description:"Unknown Protein (AHRD V1)"; NbS00019634g0006.1 protein AED:0.32 eAED:0.33 QI:0|0.85|0.5|1|0.57|0.62|8|0|323; (*GB) gi|224112613|ref|XP_002316241.1| (e_value=1e-158) predicted protein [Populus trichocarpa];; (*SWP) sp|P59277|SYP81_ARATH (e_value=4e-137) Syntaxin-81 OS=Arabidopsis thaliana GN=SYP81 PE=2 SV=2;; (*TAIR) AT1G51740.1 (e_value=3e-138) | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin of plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310;; (*ITAG) Solyc04g071730.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56289457-56294725 transcript_region:SL2.40ch04:56289457..56294725+ go_terms:GO:0005484 functional_description:"Syntaxin 81 (AHRD V1 ***- B6TDT7_MAIZE); contains Interpro domain(s) IPR019529 SNARE-complex protein Syntaxin-18 N-terminal "; GO:0005484 NbS00019634g0003.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|237; (*GB) gi|225430692|ref|XP_002265924.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100263337 [Vitis vinifera];; (*TAIR) AT5G66440.1 (e_value=6e-36) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26530274-26531032 REVERSE LENGTH=252;; (*ITAG) Solyc03g033860.1.1 (e_value=4e-90) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:9745193-9745957 transcript_region:SL2.40ch03:9745193..9745957- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00019062g0007.1 protein AED:0.22 eAED:0.22 QI:436|0.90|0.58|1|0.63|0.75|12|0|1168; (*GB) gi|359480715|ref|XP_002276278.2| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase RKP-like [Vitis vinifera];; (*SWP) sp|Q9SIZ8|RKP_ARATH (e_value=0.0) E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana GN=RKP PE=2 SV=2;; (*TAIR) AT2G22010.2 (e_value=0.0) | Symbols: RKP | related to KPC1 | chr2:9363946-9368828 REVERSE LENGTH=1283;; (*ITAG) Solyc04g054140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50936756-50946941 transcript_region:SL2.40ch04:50936756..50946941- go_terms:GO:0008270 functional_description:"Ryanodine receptor (AHRD V1 *--- P91905_CAEEL); contains Interpro domain(s) IPR018355 SPla/RYanodine receptor subgroup "; GO:0008270 NbS00032125g0005.1 protein AED:0.04 eAED:0.04 QI:919|0.75|0.6|1|0|0.2|5|990|357; (*GB) gi|359492922|ref|XP_002285705.2| (e_value=2e-99) PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH145-like [Vitis vinifera];; (*SWP) sp|Q9FY69|BH143_ARATH (e_value=1e-22) Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1;; (*TAIR) AT5G09460.1 (e_value=9e-24) | Symbols: | sequence-specific DNA binding transcription factors;transcription regulators | chr5:2944437-2945417 REVERSE LENGTH=326;; (*ITAG) Solyc04g076030.1.1 (e_value=1e-168) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:58566926-58567891 transcript_region:SL2.40ch04:58566926..58567891- go_terms:GO:0003700 functional_description:"Transcription factor/ transcription regulator (AHRD V1 **** D7M240_ARALY)"; GO:0003700 NbS00018180g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.66|1|1|1|3|0|168; (*GB) gi|270311593|gb|ACZ72945.1| (e_value=6e-100) photosystem I reaction center subunit [Nicotiana tabacum];; (*SWP) sp|P49107|PSAN_ARATH (e_value=9e-68) Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2;; (*TAIR) AT5G64040.1 (e_value=6e-69) | Symbols: PSAN | photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) | chr5:25628724-25629409 REVERSE LENGTH=171;; (*ITAG) Solyc08g013670.2.1 (e_value=1e-79) genomic_reference:SL2.40ch08 gene_region:3047003-3048193 transcript_region:SL2.40ch08:3047003..3048193- go_terms:GO:0005516 functional_description:"Photosystem I reaction center subunit (AHRD V1 ***- D2K7Z2_TOBAC); contains Interpro domain(s) IPR008796 Photosystem I reaction centre subunit N "; GO:0005516 NbS00009308g0002.1 protein AED:0.57 eAED:0.79 QI:0|0|0|0.66|1|1|3|0|92 NbS00049482g0008.1 protein AED:0.16 eAED:0.17 QI:0|0.6|0.66|1|0.6|0.66|6|333|191; (*GB) gi|340248744|dbj|BAK52670.1| (e_value=1e-105) cytokinin riboside 5'-monophosphate phosphoribohydrolase [Petunia x hybrida];; (*SWP) sp|Q8RUN2|LOG1_ARATH (e_value=1e-80) Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1;; (*TAIR) AT2G28305.1 (e_value=9e-82) | Symbols: LOG1, ATLOG1 | Putative lysine decarboxylase family protein | chr2:12081186-12084307 FORWARD LENGTH=213;; (*ITAG) Solyc04g081290.2.1 (e_value=2e-109) genomic_reference:SL2.40ch04 gene_region:62925052-62928360 transcript_region:SL2.40ch04:62925052..62928360+ go_terms:GO:0016831,GO:0042803 functional_description:"Lysine decarboxylase-like protein (AHRD V1 **-- B6T4M5_MAIZE); contains Interpro domain(s) IPR005269 Conserved hypothetical protein CHP00730 "; GO:0016831,GO:0042803 NbS00049482g0007.1 protein AED:0.18 eAED:0.18 QI:288|0.71|0.62|1|0.85|0.75|8|0|514; (*GB) gi|225458016|ref|XP_002276739.1| (e_value=0.0) PREDICTED: endoglucanase 24 [Vitis vinifera];; (*SWP) sp|Q9FXI9|GUN2_ARATH (e_value=0.0) Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g19940 PE=2 SV=1;; (*TAIR) AT1G19940.1 (e_value=0.0) | Symbols: AtGH9B5, GH9B5 | glycosyl hydrolase 9B5 | chr1:6918323-6920268 REVERSE LENGTH=515;; (*ITAG) Solyc04g081300.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62929694-62935196 transcript_region:SL2.40ch04:62929694..62935196- go_terms:GO:0004553 functional_description:"Endoglucanase 1 (AHRD V1 ***- B6U0J0_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0004553 NbS00043338g0006.1 protein AED:0.07 eAED:0.07 QI:0|1|0.66|1|1|0.66|3|267|626; (*GB) gi|225431525|ref|XP_002275240.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100248912 [Vitis vinifera];; (*SWP) sp|Q9LSB1|GUX1_ARATH (e_value=0.0) UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1;; (*TAIR) AT3G18660.2 (e_value=0.0) | Symbols: PGSIP1, GUX1 | plant glycogenin-like starch initiation protein 1 | chr3:6419211-6421959 REVERSE LENGTH=659;; (*ITAG) Solyc11g005760.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:593380-596157 transcript_region:SL2.40ch11:593380..596157- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00053038g0002.1 protein AED:0.16 eAED:0.16 QI:154|1|1|1|0.75|0.6|5|395|188; (*GB) gi|76573365|gb|ABA46787.1| (e_value=6e-107) unknown [Solanum tuberosum];; (*TAIR) AT1G26750.1 (e_value=1e-52) | Symbols: | unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9246857-9248053 FORWARD LENGTH=195;; (*ITAG) Solyc07g017410.2.1 (e_value=2e-116) genomic_reference:SL2.40ch07 gene_region:6911254-6913069 transcript_region:SL2.40ch07:6911254..6913069+ functional_description:"Unknown Protein (AHRD V1)"; NbS00053038g0010.1 protein AED:0.30 eAED:0.62 QI:0|0|0|1|0|0|2|0|77 NbS00003502g0005.1 protein AED:0.10 eAED:0.10 QI:985|0.5|0.66|0.66|1|0.66|3|0|93; (*GB) gi|225440670|ref|XP_002279771.1| (e_value=3e-27) PREDICTED: protein yippee-like [Vitis vinifera];; (*SWP) sp|Q9LY56|YIPL4_ARATH (e_value=4e-24) Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1;; (*TAIR) AT3G55890.1 (e_value=3e-25) | Symbols: | Yippee family putative zinc-binding protein | chr3:20740908-20741868 FORWARD LENGTH=121;; (*ITAG) Solyc09g014500.2.1 (e_value=9e-31) genomic_reference:SL2.40ch09 gene_region:6131688-6136473 transcript_region:SL2.40ch09:6131688..6136473- go_terms:GO:0008270 functional_description:"Yippee zinc-binding-like protein (AHRD V1 **** C1FDK9_9CHLO); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0008270 NbS00015905g0005.1 protein AED:0.06 eAED:0.06 QI:236|0.7|0.63|1|0.9|0.81|11|0|1813; (*GB) gi|359489318|ref|XP_002269466.2| (e_value=0.0) PREDICTED: eukaryotic translation initiation factor 4G-like [Vitis vinifera];; (*SWP) sp|Q76E23|IF4G1_ARATH (e_value=0.0) Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=2;; (*TAIR) AT3G60240.3 (e_value=0.0) | Symbols: EIF4G, CUM2 | eukaryotic translation initiation factor 4G | chr3:22261842-22268295 FORWARD LENGTH=1725;; (*ITAG) Solyc01g088700.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:75208045-75215608 transcript_region:SL2.40ch01:75208045..75215608- go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 gamma 1 (AHRD V1 *-*- A9QXE6_MESAU); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00035155g0010.1 protein AED:0.21 eAED:0.21 QI:0|0|0.5|1|1|0.5|2|0|63; (*GB) gi|297841423|ref|XP_002888593.1| (e_value=2e-29) meiotic asynaptic mutant 1 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G67370.1 (e_value=5e-29) | Symbols: ASY1, ATASY1 | DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596;; (*ITAG) Solyc04g007330.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1040989-1046461 transcript_region:SL2.40ch04:1040989..1046461- go_terms:GO:0003677 functional_description:"HORMA domain containing protein expressed (AHRD V1 *--- Q2QMF2_ORYSJ); contains Interpro domain(s) IPR003511 DNA-binding HORMA "; GO:0003677 NbS00035155g0008.1 protein AED:0.01 eAED:0.01 QI:0|1|1|1|0.5|0.66|3|155|280; (*GB) gi|225451371|ref|XP_002263857.1| (e_value=4e-106) PREDICTED: cysteine-rich repeat secretory protein 60-like [Vitis vinifera];; (*SWP) sp|Q0WPN8|CRR60_ARATH (e_value=5e-93) Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1;; (*TAIR) AT5G37660.1 (e_value=2e-94) | Symbols: PDLP7 | plasmodesmata-located protein 7 | chr5:14959842-14961379 FORWARD LENGTH=288;; (*ITAG) Solyc05g051270.2.1 (e_value=5e-144) genomic_reference:SL2.40ch05 gene_region:60691832-60693612 transcript_region:SL2.40ch05:60691832..60693612+ go_terms:GO:0005515 functional_description:"Cysteine-rich repeat secretory protein 60 (AHRD V1 ***- CRR60_ARATH); contains Interpro domain(s) IPR002902 Protein of unknown function DUF26 "; GO:0005515 NbS00035155g0012.1 protein AED:0.08 eAED:0.08 QI:0|0.57|0.5|0.87|0.85|0.87|8|0|616; (*GB) gi|296083046|emb|CBI22450.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0H904|XYNC_ASPFU (e_value=5e-21) Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=xlnC PE=2 SV=2;; (*TAIR) AT4G33840.1 (e_value=4e-179) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc05g051260.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:60688299-60691358 transcript_region:SL2.40ch05:60688299..60691358+ go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00001556g0005.1 protein AED:0.31 eAED:0.31 QI:0|1|0.87|1|1|1|8|0|472; (*GB) gi|225438549|ref|XP_002279804.1| (e_value=0.0) PREDICTED: ABC transporter F family member 5 [Vitis vinifera];; (*SWP) sp|Q9LV93|AB5F_ARATH (e_value=0.0) ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1;; (*TAIR) AT5G64840.1 (e_value=0.0) | Symbols: GCN5, ATGCN5 | general control non-repressible 5 | chr5:25916956-25919693 REVERSE LENGTH=692;; (*ITAG) Solyc04g051800.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:50247234-50252528 transcript_region:SL2.40ch04:50247234..50252528- go_terms:GO:0042626 functional_description:"ABC transporter ATP-binding protein (AHRD V1 ***- D4ZPJ5_SPIPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00001556g0001.1 protein AED:0.42 eAED:0.46 QI:0|-1|0|1|-1|1|1|0|210; (*GB) gi|224081252|ref|XP_002306353.1| (e_value=7e-65) ABC transporter family protein [Populus trichocarpa];; (*SWP) sp|Q9LV93|AB5F_ARATH (e_value=1e-61) ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1;; (*TAIR) AT5G64840.1 (e_value=1e-62) | Symbols: GCN5, ATGCN5 | general control non-repressible 5 | chr5:25916956-25919693 REVERSE LENGTH=692;; (*ITAG) Solyc04g051800.2.1 (e_value=6e-98) genomic_reference:SL2.40ch04 gene_region:50247234-50252528 transcript_region:SL2.40ch04:50247234..50252528- go_terms:GO:0042626 functional_description:"ABC transporter ATP-binding protein (AHRD V1 ***- D4ZPJ5_SPIPL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00001556g0106.1 protein AED:0.19 eAED:0.19 QI:264|0.77|0.6|1|0.66|0.7|10|175|344 NbS00001556g0102.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|430 NbS00001556g0202.1 protein AED:0.04 eAED:0.04 QI:0|0|0|1|1|1|2|0|476 NbS00031460g0001.1 protein AED:0.10 eAED:0.10 QI:0|1|0.75|1|1|1|4|464|484; (*GB) gi|225437795|ref|XP_002281632.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100255480 isoform 1 [Vitis vinifera];; (*TAIR) AT2G47010.2 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc01g068130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69627835-69631398 transcript_region:SL2.40ch01:69627835..69631398- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbC26298370g0001.1 protein AED:0.05 eAED:0.05 QI:103|0.66|0.5|1|1|1|4|0|237; (*GB) gi|297741510|emb|CBI32642.3| (e_value=6e-37) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G37300.2 (e_value=2e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. | chr2:15662845-15664599 REVERSE LENGTH=248;; (*ITAG) Solyc10g084420.1.1 (e_value=4e-46) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch10 gene_region:63288977-63290725 transcript_region:SL2.40ch10:63288977..63290725- functional_description:"Unknown Protein (AHRD V1)"; NbS00027027g0006.1 protein AED:0.10 eAED:0.10 QI:131|1|0|1|0|0.5|2|0|32 NbS00027027g0005.1 protein AED:0.17 eAED:0.17 QI:144|1|1|1|0.5|0.66|3|742|93; (*GB) gi|224060445|ref|XP_002300203.1| (e_value=2e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|O14280|YETB_SCHPO (e_value=6e-18) Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8C9.11 PE=2 SV=2;; (*TAIR) AT5G09830.1 (e_value=2e-38) | Symbols: | BolA-like family protein | chr5:3057816-3058769 REVERSE LENGTH=93;; (*ITAG) Solyc11g005360.1.1 (e_value=6e-47) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:291709-295568 transcript_region:SL2.40ch11:291709..295568- functional_description:"BolA-like protein (AHRD V1 ***- B6SIB6_MAIZE); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00036362g0029.1 protein AED:0.33 eAED:0.33 QI:0|0.5|0.2|0.8|0.5|0.6|5|0|313; (*GB) gi|2500521|sp|Q40468.1|IF415_TOBAC (e_value=8e-153) RecName: Full=Eukaryotic initiation factor 4A-15; Short=eIF-4A-15; AltName: Full=ATP-dependent RNA helicase eIF4A-15;; (*SWP) sp|Q40468|IF415_TOBAC (e_value=2e-154) Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G54270.1 (e_value=1e-140) | Symbols: EIF4A-2 | eif4a-2 | chr1:20260495-20262018 FORWARD LENGTH=412;; (*ITAG) Solyc12g095990.1.1 (e_value=6e-149) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63417253-63419388 transcript_region:SL2.40ch12:63417253..63419388- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 ***- A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00036362g0025.1 protein AED:0.13 eAED:0.13 QI:383|0.82|0.77|1|0.76|0.72|18|0|1327; (*GB) gi|359484297|ref|XP_002279178.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100257683 [Vitis vinifera];; (*TAIR) AT4G29790.1 (e_value=0.0) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211;; (*ITAG) Solyc07g040980.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:48762547-48775386 transcript_region:SL2.40ch07:48762547..48775386+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00036362g0031.1 protein AED:0.24 eAED:0.24 QI:223|0.72|0.58|1|0.63|0.75|12|0|415; (*GB) gi|121501708|gb|ABM55249.1| (e_value=0.0) casein kinase [Beta vulgaris];; (*SWP) sp|P42158|KC1D_ARATH (e_value=3e-167) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=9e-177) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc07g040720.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:46775853-46782305 transcript_region:SL2.40ch07:46775853..46782305+ go_terms:GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** D8UCQ6_VOLCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00036362g0032.1 protein AED:0.32 eAED:0.45 QI:0|0|0|0.5|0|0.5|2|0|177; (*ITAG) Solyc01g094420.2.1 (e_value=3e-15) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00036362g0033.1 protein AED:0.89 eAED:0.89 QI:0|0|0|0.16|0.8|0.83|6|0|200 NbS00030850g0012.1 protein AED:0.15 eAED:0.24 QI:0|0.66|0.5|1|1|0.75|4|0|363; (*GB) gi|356528320|ref|XP_003532752.1| (e_value=1e-98) PREDICTED: uncharacterized protein LOC100784488 [Glycine max];; (*TAIR) AT4G28590.1 (e_value=4e-89) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331;; (*ITAG) Solyc02g079730.2.1 (e_value=3e-174) genomic_reference:SL2.40ch02 gene_region:38759779-38761649 transcript_region:SL2.40ch02:38759779..38761649+ functional_description:"Thioredoxin family protein (AHRD V1 ***- B6TC88_MAIZE)"; NbS00030850g0003.1 protein AED:0.33 eAED:0.33 QI:0|1|0.66|1|1|1|6|0|817; (*GB) gi|224113157|ref|XP_002332644.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O81832|Y4729_ARATH (e_value=4e-176) G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=2 SV=4;; (*TAIR) AT4G27290.1 (e_value=3e-177) | Symbols: | S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783;; (*ITAG) Solyc02g079630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38716738-38720093 transcript_region:SL2.40ch02:38716738..38720093+ go_terms:GO:0019199,GO:0004674 functional_description:"Receptor kinase (AHRD V1 **** Q39086_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00030850g0009.1 protein AED:0.42 eAED:0.42 QI:552|0.4|0.33|0.83|1|1|6|0|329; (*GB) gi|255555127|ref|XP_002518601.1| (e_value=2e-129) S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis];; (*SWP) sp|Q9S972|SD16_ARATH (e_value=1e-109) Receptor-like serine/threonine-protein kinase SD1-6 OS=Arabidopsis thaliana GN=SD16 PE=1 SV=2;; (*TAIR) AT1G65800.1 (e_value=1e-110) | Symbols: ARK2, RK2 | receptor kinase 2 | chr1:24473166-24476523 FORWARD LENGTH=847;; (*ITAG) Solyc02g079590.2.1 (e_value=4e-167) genomic_reference:SL2.40ch02 gene_region:38694213-38700089 transcript_region:SL2.40ch02:38694213..38700089+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00030850g0013.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|329; (*GB) gi|836954|gb|AAC23542.1| (e_value=1e-125) receptor protein kinase [Ipomoea trifida];; (*SWP) sp|O81905|SD18_ARATH (e_value=2e-92) Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1;; (*TAIR) AT4G21380.1 (e_value=2e-93) | Symbols: ARK3, RK3 | receptor kinase 3 | chr4:11389219-11393090 REVERSE LENGTH=850;; (*ITAG) Solyc02g079590.2.1 (e_value=3e-176) genomic_reference:SL2.40ch02 gene_region:38694213-38700089 transcript_region:SL2.40ch02:38694213..38700089+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00001576g0007.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|416; (*GB) gi|255540029|ref|XP_002511079.1| (e_value=0.0) catalytic, putative [Ricinus communis];; (*SWP) sp|Q940Q8|IX10L_ARATH (e_value=0.0) Probable beta-1,4-xylosyltransferase IRX10L OS=Arabidopsis thaliana GN=IRX10L PE=2 SV=1;; (*TAIR) AT5G61840.1 (e_value=0.0) | Symbols: GUT1 | Exostosin family protein | chr5:24839365-24841703 REVERSE LENGTH=415;; (*ITAG) Solyc05g012730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5906880-5908127 transcript_region:SL2.40ch05:5906880..5908127+ go_terms:GO:0080116 functional_description:"Exostosin-like glycosyltransferase (AHRD V1 **-- A8ILW6_CHLRE); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0080116 NbS00001576g0016.1 protein AED:0.26 eAED:0.26 QI:0|1|0|1|1|1|2|0|86; (*GB) gi|255541784|ref|XP_002511956.1| (e_value=3e-18) aldose 1-epimerase, putative [Ricinus communis];; (*TAIR) AT4G23730.1 (e_value=3e-18) | Symbols: | Galactose mutarotase-like superfamily protein | chr4:12362955-12364792 FORWARD LENGTH=306;; (*ITAG) Solyc08g081930.2.1 (e_value=3e-30) genomic_reference:SL2.40ch08 gene_region:62007442-62011190 transcript_region:SL2.40ch08:62007442..62011190+ go_terms:GO:0047938 functional_description:"Aldose 1-epimerase family protein (AHRD V1 **** B2WS69_ARAHA); contains Interpro domain(s) IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup "; GO:0047938 NbS00001576g0021.1 protein AED:0.29 eAED:0.29 QI:224|0.5|0.33|1|0.5|0.66|3|0|65; (*GB) gi|224101415|ref|XP_002312269.1| (e_value=5e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69400.1 (e_value=5e-13) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:26087027-26088806 FORWARD LENGTH=314;; (*ITAG) Solyc05g012720.2.1 (e_value=1e-29) genomic_reference:SL2.40ch05 gene_region:5901332-5905739 transcript_region:SL2.40ch05:5901332..5905739+ go_terms:GO:0008017,GO:0000166 functional_description:"Mitotic checkpoint protein BUB3 (AHRD V1 **-- B4FRV7_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0008017,GO:0000166 NbS00001576g0010.1 protein AED:0.32 eAED:0.34 QI:0|0|0|0.8|1|1|5|0|153; (*GB) gi|238886097|gb|ACR77530.1| (e_value=1e-36) adenylyl cyclase [Nicotiana benthamiana];; (*ITAG) Solyc07g041930.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:51941913-51953337 transcript_region:SL2.40ch07:51941913..51953337+ functional_description:"Adenylyl cyclase (AHRD V1 ***- C5MTW3_NICBE)"; NbS00001576g0027.1 protein AED:0.20 eAED:0.20 QI:0|0.2|0|0.83|0.2|0.33|6|0|904; (*GB) gi|142942427|gb|ABO93001.1| (e_value=0.0) putative disease resistance protein [Solanum tuberosum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=0.0) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=2e-56) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012910.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001576g0026.1 protein AED:0.36 eAED:0.36 QI:0|0|0|1|0|0.5|2|0|406; (*GB) gi|53854474|gb|AAU95633.1| (e_value=1e-23) R1 [Solanum tuberosum];; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=7e-25) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc05g012910.2.1 (e_value=1e-51) genomic_reference:SL2.40ch05 gene_region:6039234-6043657 transcript_region:SL2.40ch05:6039234..6043657+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001576g0023.1 protein AED:0.18 eAED:0.19 QI:0|0|0|1|0|0|4|0|689; (*GB) gi|117949825|sp|Q6L3Z4.2|R1B12_SOLDE (e_value=7e-169) RecName: Full=Putative late blight resistance protein homolog R1B-12;; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=2e-170) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT5G35450.1 (e_value=1e-38) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:13667809-13670685 FORWARD LENGTH=901;; (*ITAG) Solyc05g012890.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6033094-6036868 transcript_region:SL2.40ch05:6033094..6036868+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001576g0024.1 protein AED:0.36 eAED:0.38 QI:0|0|0|0.66|0|0|3|0|327; (*GB) gi|48057662|gb|AAT39961.1| (e_value=1e-34) Putative late blight resistance protein, identical [Solanum demissum];; (*SWP) sp|Q6L403|R1B17_SOLDE (e_value=1e-33) Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1;; (*ITAG) Solyc05g007610.2.1 (e_value=1e-95) genomic_reference:SL2.40ch05 gene_region:2136050-2142660 transcript_region:SL2.40ch05:2136050..2142660+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00038113g0004.1 protein AED:0.12 eAED:0.12 QI:119|0.61|0.71|1|0.69|0.71|14|229|824; (*GB) gi|359473015|ref|XP_003631230.1| (e_value=0.0) PREDICTED: phosphate transporter PHO1 homolog 1 isoform 2 [Vitis vinifera];; (*SWP) sp|Q93ZF5|PHO11_ARATH (e_value=0.0) Phosphate transporter PHO1 homolog 1 OS=Arabidopsis thaliana GN=PHO1-H1 PE=2 SV=1;; (*TAIR) AT1G68740.1 (e_value=0.0) | Symbols: PHO1;H1 | EXS (ERD1/XPR1/SYG1) family protein | chr1:25812735-25816574 REVERSE LENGTH=784;; (*ITAG) Solyc05g010060.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:4268423-4273628 transcript_region:SL2.40ch05:4268423..4273628+ go_terms:GO:0005515,GO:0004930 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-* B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0005515,GO:0004930 NbS00022645g0009.1 protein AED:0.13 eAED:0.17 QI:0|0.33|0|0.75|0|0.5|4|0|212; (*GB) gi|53793731|gb|AAU93594.1| (e_value=1e-118) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=3e-114) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=2e-115) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=2e-121) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00022645g0008.1 protein AED:0.32 eAED:0.33 QI:0|1|0.5|1|1|0.5|2|0|187; (*GB) gi|53793731|gb|AAU93594.1| (e_value=2e-118) 40S ribosomal protein S9 , putative [Solanum demissum];; (*SWP) sp|Q9FLF0|RS92_ARATH (e_value=7e-114) 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1;; (*TAIR) AT5G39850.1 (e_value=5e-115) | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197;; (*ITAG) Solyc05g007250.2.1 (e_value=4e-121) genomic_reference:SL2.40ch05 gene_region:1920398-1922917 transcript_region:SL2.40ch05:1920398..1922917- go_terms:GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- B3TM27_ELAGV); contains Interpro domain(s) IPR001912 Ribosomal protein S4 "; GO:0003735 NbS00003367g0001.1 protein AED:0.00 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|149; (*GB) gi|225447372|ref|XP_002280993.1| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100256871 [Vitis vinifera];; (*ITAG) Solyc07g052680.1.1 (e_value=7e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:58459308-58459763 transcript_region:SL2.40ch07:58459308..58459763- functional_description:"Unknown Protein (AHRD V1)"; NbS00004044g0002.1 protein AED:0.09 eAED:0.09 QI:130|0.71|0.87|1|1|1|8|580|284; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=6e-166) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=2e-167) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=6e-143) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=8e-167) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00053437g0001.1 protein AED:0.13 eAED:0.13 QI:3654|0.94|0.95|1|0.42|0.3|20|419|158; (*GB) gi|270269270|gb|ACZ66259.1| (e_value=8e-94) glucan/water dikinase [Solanum tuberosum];; (*SWP) sp|Q2QTC2|PWD_ORYSJ (e_value=2e-73) Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2;; (*TAIR) AT5G26570.1 (e_value=9e-74) | Symbols: PWD, OK1, ATGWD3 | catalytics;carbohydrate kinases;phosphoglucan, water dikinases | chr5:9261580-9267526 FORWARD LENGTH=1196;; (*ITAG) Solyc09g098040.2.1 (e_value=4e-98) genomic_reference:SL2.40ch09 gene_region:67222726-67234620 transcript_region:SL2.40ch09:67222726..67234620+ go_terms:GO:0019200,GO:0051752 functional_description:"Phosphoglucan water dikinase (AHRD V1 *-** A8J6C3_CHLRE); contains Interpro domain(s) IPR013783 Immunoglobulin-like fold "; GO:0019200,GO:0051752 NbS00010165g0004.1 protein AED:0.10 eAED:0.10 QI:0|1|0.33|1|0.5|0.33|3|0|379; (*GB) gi|359472655|ref|XP_002282967.2| (e_value=4e-89) PREDICTED: zinc finger CCCH domain-containing protein 15 [Vitis vinifera];; (*SWP) sp|A2ZVY5|C3H9_ORYSJ (e_value=3e-67) Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp. japonica GN=Os01g0645000 PE=2 SV=1;; (*TAIR) AT1G66810.1 (e_value=1e-65) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:24927613-24928619 REVERSE LENGTH=310;; (*ITAG) Solyc02g086430.2.1 (e_value=8e-108) genomic_reference:SL2.40ch02 gene_region:43675564-43676632 transcript_region:SL2.40ch02:43675564..43676632+ go_terms:GO:0008270 functional_description:"Zinc finger protein 36 C3H type-like 1 (Fragment) (AHRD V1 *-*- C5H180_ACRGR); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00010165g0008.1 protein AED:0.20 eAED:0.20 QI:87|1|0.75|1|0.85|0.87|8|478|326; (*GB) gi|255574320|ref|XP_002528074.1| (e_value=2e-150) phosphatidic acid phosphatase, putative [Ricinus communis];; (*SWP) sp|Q8LFD1|LPP3_ARATH (e_value=2e-142) Putative lipid phosphate phosphatase 3, chloroplastic OS=Arabidopsis thaliana GN=LPP3 PE=2 SV=1;; (*TAIR) AT3G02600.5 (e_value=4e-144) | Symbols: LPP3, ATLPP3 | lipid phosphate phosphatase 3 | chr3:552937-554411 FORWARD LENGTH=314;; (*ITAG) Solyc02g086370.2.1 (e_value=2e-165) genomic_reference:SL2.40ch02 gene_region:43609598-43613135 transcript_region:SL2.40ch02:43609598..43613135+ go_terms:GO:0008195 functional_description:"ER Phosphatidate Phosphatase (AHRD V1 **** B9SJX0_RICCO); contains Interpro domain(s) IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase "; GO:0008195 NbS00010165g0003.1 protein AED:0.30 eAED:0.30 QI:0|-1|0|1|-1|1|1|0|137; (*GB) gi|351722239|ref|NP_001237237.1| (e_value=2e-19) uncharacterized protein LOC100306593 [Glycine max]; NbS00010165g0002.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|129; (*ITAG) Solyc02g086380.1.1 (e_value=3e-33) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:43613223-43613651 transcript_region:SL2.40ch02:43613223..43613651- functional_description:"Unknown Protein (AHRD V1)"; NbS00034767g0003.1 protein AED:0.33 eAED:0.54 QI:0|0|0|1|1|1|2|0|115; (*GB) gi|255539561|ref|XP_002510845.1| (e_value=1e-19) Dehydration-responsive element-binding protein 1B, putative [Ricinus communis];; (*SWP) sp|Q9CAN9|ERF26_ARATH (e_value=1e-20) Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1;; (*TAIR) AT5G25810.1 (e_value=2e-19) | Symbols: tny | Integrase-type DNA-binding superfamily protein | chr5:8986976-8987632 REVERSE LENGTH=218;; (*ITAG) Solyc08g080290.2.1 (e_value=2e-22) genomic_reference:SL2.40ch08 gene_region:60773586-60774903 transcript_region:SL2.40ch08:60773586..60774903- go_terms:GO:0016563,GO:0003677 functional_description:"Ethylene-responsive transcription factor 1 (AHRD V1 *-** ERF1_ORYSJ); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0016563,GO:0003677 NbS00020413g0003.1 protein AED:0.13 eAED:0.13 QI:0|1|0.66|1|1|1|3|706|286; (*GB) gi|225447731|ref|XP_002277858.1| (e_value=6e-157) PREDICTED: (+)-neomenthol dehydrogenase [Vitis vinifera];; (*SWP) sp|B2X050|MNR1_CAPAN (e_value=2e-60) (+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1;; (*TAIR) AT5G51030.1 (e_value=3e-153) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:20747862-20749352 REVERSE LENGTH=314;; (*ITAG) Solyc06g068740.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:38998422-39001725 transcript_region:SL2.40ch06:38998422..39001725+ go_terms:GO:0008152,GO:0055114 functional_description:"Dehydrogenase/reductase SDR family member 7B (AHRD V1 *-*- DRS7B_BOVIN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00020413g0010.1 protein AED:0.11 eAED:0.15 QI:0|0|0|1|0.5|0.66|3|0|403; (*GB) gi|359491145|ref|XP_002284739.2| (e_value=4e-157) PREDICTED: uncharacterized protein LOC100243857 [Vitis vinifera];; (*TAIR) AT5G61820.1 (e_value=2e-127) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834505-24836223 REVERSE LENGTH=475;; (*ITAG) Solyc06g068730.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38994782-38997601 transcript_region:SL2.40ch06:38994782..38997601- functional_description:"MtN19-like protein (AHRD V1 ***- Q64EX4_PEA); contains Interpro domain(s) IPR011692 Stress up-regulated Nod 19 "; NbS00024823g0003.1 protein AED:0.02 eAED:0.02 QI:0|1|0.5|1|1|1|2|0|182; (*GB) gi|359488020|ref|XP_002268421.2| (e_value=5e-55) PREDICTED: uncharacterized protein LOC100244447 [Vitis vinifera];; (*TAIR) AT1G08790.1 (e_value=6e-40) | Symbols: | Protein of unknown function (DUF1685) | chr1:2811989-2812646 FORWARD LENGTH=190;; (*ITAG) Solyc01g097180.2.1 (e_value=2e-70) genomic_reference:SL2.40ch01 gene_region:79882439-79883709 transcript_region:SL2.40ch01:79882439..79883709+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00001861g0013.1 protein AED:0.15 eAED:0.16 QI:0|0.8|0.63|0.90|0.8|0.90|11|0|353; (*GB) gi|255554947|ref|XP_002518511.1| (e_value=0.0) Adenosine deaminase, putative [Ricinus communis];; (*SWP) sp|Q6DHV7|ADAL_HUMAN (e_value=1e-74) Adenosine deaminase-like protein OS=Homo sapiens GN=ADAL PE=2 SV=2;; (*TAIR) AT4G04880.1 (e_value=1e-173) | Symbols: | adenosine/AMP deaminase family protein | chr4:2465055-2467103 REVERSE LENGTH=355;; (*ITAG) Solyc10g005310.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:223309-228141 transcript_region:SL2.40ch10:223309..228141- go_terms:GO:0004000 functional_description:"Adenosine deaminase-like protein (Predicted) (AHRD V1 **** B2KIP2_RHIFE); contains Interpro domain(s) IPR001365 Adenosine/AMP deaminase "; GO:0004000 NbS00001861g0008.1 protein AED:0.53 eAED:0.53 QI:0|0.33|0.25|0.5|1|1|4|181|113; (*GB) gi|225444339|ref|XP_002264460.1| (e_value=1e-39) PREDICTED: probable cardiolipin synthase 1 [Vitis vinifera];; (*TAIR) AT4G04870.1 (e_value=2e-35) | Symbols: CLS | cardiolipin synthase | chr4:2461904-2464004 REVERSE LENGTH=341;; (*ITAG) Solyc10g005290.2.1 (e_value=1e-39) genomic_reference:SL2.40ch10 gene_region:215116-219344 transcript_region:SL2.40ch10:215116..219344- go_terms:GO:0008808 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-*- A7HGL7_ANADF); contains Interpro domain(s) IPR000462 CDP-alcohol phosphatidyltransferase "; GO:0008808 NbS00001861g0009.1 protein AED:0.23 eAED:0.29 QI:0|0.25|0.2|1|0.5|0.6|5|0|342; (*GB) gi|255563977|ref|XP_002522988.1| (e_value=2e-124) receptor serine-threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=9e-110) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT3G20530.1 (e_value=4e-122) | Symbols: | Protein kinase superfamily protein | chr3:7166318-7167806 FORWARD LENGTH=386;; (*ITAG) Solyc10g005300.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:220068-222525 transcript_region:SL2.40ch10:220068..222525+ go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00018392g0001.1 protein AED:0.11 eAED:0.11 QI:0|-1|0|1|-1|1|1|0|548; (*GB) gi|255558694|ref|XP_002520371.1| (e_value=0.0) basic 7S globulin 2 precursor small subunit, putative [Ricinus communis];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=3e-60) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT3G59080.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr3:21836812-21838419 FORWARD LENGTH=535;; (*ITAG) Solyc05g016310.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:15493540-15495120 transcript_region:SL2.40ch05:15493540..15495120+ go_terms:GO:0003677 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0003677 NbS00018392g0003.1 protein AED:0.08 eAED:0.10 QI:0|-1|0|1|-1|0|1|0|184; (*GB) gi|255567220|ref|XP_002524591.1| (e_value=1e-96) catalytic, putative [Ricinus communis];; (*SWP) sp|Q9FFN2|GLYT3_ARATH (e_value=3e-85) Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2;; (*TAIR) AT5G03795.1 (e_value=3e-86) | Symbols: | Exostosin family protein | chr5:1007554-1010373 REVERSE LENGTH=518;; (*ITAG) Solyc05g016320.1.1 (e_value=2e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:15551119-15553856 transcript_region:SL2.40ch05:15551119..15553856- go_terms:GO:0016020 functional_description:"Exostosin family protein (AHRD V1 ***- D7LPB7_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00030201g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|131; (*GB) gi|357480545|ref|XP_003610558.1| (e_value=8e-16) Cysteine proteinase inhibitor [Medicago truncatula];; (*TAIR) AT5G47550.1 (e_value=9e-15) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc11g012380.1.1 (e_value=3e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:5224149-5224592 transcript_region:SL2.40ch11:5224149..5224592+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030201g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|120; (*GB) gi|40807639|gb|AAR92225.1| (e_value=3e-30) cystatin [Actinidia eriantha];; (*SWP) sp|Q6TPK4|CYT1_ACTDE (e_value=8e-31) Cysteine proteinase inhibitor 1 OS=Actinidia deliciosa PE=1 SV=1;; (*TAIR) AT5G47550.1 (e_value=1e-30) | Symbols: | Cystatin/monellin superfamily protein | chr5:19286596-19286964 REVERSE LENGTH=122;; (*ITAG) Solyc04g014790.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5030604-5031014 transcript_region:SL2.40ch04:5030604..5031014+ go_terms:GO:0004869 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q30KW6_ZEAMP); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869 NbS00008502g0011.1 protein AED:0.11 eAED:0.12 QI:0|1|0.75|1|0.66|0.75|4|459|292; (*GB) gi|297798054|ref|XP_002866911.1| (e_value=1e-121) hypothetical protein ARALYDRAFT_353023 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8S8F8|GEM_ARATH (e_value=2e-119) GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1;; (*TAIR) AT2G22475.1 (e_value=1e-120) | Symbols: GEM | GRAM domain family protein | chr2:9541523-9544778 FORWARD LENGTH=299;; (*ITAG) Solyc04g014250.2.1 (e_value=3e-175) genomic_reference:SL2.40ch04 gene_region:4544956-4551102 transcript_region:SL2.40ch04:4544956..4551102+ functional_description:"FIP1 (AHRD V1 **-- B6SNS7_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00008502g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|1|2|24|241; (*GB) gi|356502059|ref|XP_003519839.1| (e_value=5e-73) PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max];; (*SWP) sp|Q9SB61|Y4466_ARATH (e_value=1e-57) ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1;; (*TAIR) AT2G02540.1 (e_value=4e-58) | Symbols: ATHB21, ZFHD4, HB21, ZHD3 | homeobox protein 21 | chr2:684302-685234 FORWARD LENGTH=310;; (*ITAG) Solyc04g014260.1.1 (e_value=5e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4560854-4561970 transcript_region:SL2.40ch04:4560854..4561970- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK17_YUCFI); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00008502g0012.1 protein AED:0.33 eAED:0.56 QI:0|0|0|1|0|0|2|0|111; (*ITAG) Solyc09g059390.2.1 (e_value=1e-27) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00046731g0003.1 protein AED:0.14 eAED:0.34 QI:0|-1|0|1|-1|1|1|0|383; (*GB) gi|297737419|emb|CBI26620.3| (e_value=1e-100) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G54880.1 (e_value=1e-77) | Symbols: | DTW domain-containing protein | chr5:22291920-22293104 FORWARD LENGTH=394;; (*ITAG) Solyc07g064480.1.1 (e_value=9e-158) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63836340-63837317 transcript_region:SL2.40ch07:63836340..63837317+ functional_description:"DTW domain-containing protein (AHRD V1 ***- D7MUX4_ARALY); contains Interpro domain(s) IPR005636 DTW "; NbS00046731g0009.1 protein AED:0.35 eAED:0.35 QI:0|1|0.5|1|1|0.5|2|0|95; (*GB) gi|225461013|ref|XP_002280849.1| (e_value=7e-36) PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera];; (*TAIR) AT3G20510.1 (e_value=8e-29) | Symbols: | Transmembrane proteins 14C | chr3:7160884-7161991 FORWARD LENGTH=119;; (*ITAG) Solyc10g006310.2.1 (e_value=2e-42) genomic_reference:SL2.40ch10 gene_region:955678-959714 transcript_region:SL2.40ch10:955678..959714+ go_terms:GO:0016020 functional_description:"UPF0136 membrane protein At2g26240 (AHRD V1 ***- U136_ARATH); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00046731g0010.1 protein AED:0.40 eAED:0.40 QI:425|0|0.5|1|1|1|2|0|176; (*GB) gi|363814400|ref|NP_001242838.1| (e_value=4e-73) uncharacterized protein LOC100790001 precursor [Glycine max];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=2e-46) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT2G42850.1 (e_value=1e-45) | Symbols: CYP718 | cytochrome P450, family 718 | chr2:17831662-17833309 FORWARD LENGTH=485;; (*ITAG) Solyc07g064450.2.1 (e_value=3e-88) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00019759g0004.1 protein AED:0.54 eAED:0.72 QI:41|0|0|0.28|1|0.85|7|0|249; (*GB) gi|255578902|ref|XP_002530304.1| (e_value=3e-41) phosphatidylinositol glycan, putative [Ricinus communis];; (*TAIR) AT5G17250.1 (e_value=2e-27) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=3e-63) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00025911g0007.1 protein AED:0.08 eAED:0.08 QI:0|1|0.87|1|0.71|0.62|8|0|496; (*GB) gi|356565521|ref|XP_003550988.1| (e_value=0.0) PREDICTED: aspartic proteinase-like protein 2-like [Glycine max];; (*SWP) sp|Q9S9K4|ASPL2_ARATH (e_value=4e-38) Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2;; (*TAIR) AT5G43100.1 (e_value=0.0) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631;; (*ITAG) Solyc08g029230.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:23528941-23542136 transcript_region:SL2.40ch08:23528941..23542136+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00025911g0006.1 protein AED:0.39 eAED:0.39 QI:30|0.33|0.25|0.75|0.66|0.75|4|220|154; (*GB) gi|225458774|ref|XP_002283258.1| (e_value=6e-35) PREDICTED: aspartic proteinase-like protein 2 [Vitis vinifera];; (*TAIR) AT5G43100.1 (e_value=2e-28) | Symbols: | Eukaryotic aspartyl protease family protein | chr5:17299264-17302718 FORWARD LENGTH=631;; (*ITAG) Solyc08g029230.2.1 (e_value=4e-66) genomic_reference:SL2.40ch08 gene_region:23528941-23542136 transcript_region:SL2.40ch08:23528941..23542136+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00031801g0005.1 protein AED:0.04 eAED:0.11 QI:0|0.25|0.2|1|0|0|5|0|593; (*GB) gi|255540891|ref|XP_002511510.1| (e_value=0.0) nitrate transporter, putative [Ricinus communis];; (*SWP) sp|Q3E8X3|PTR52_ARATH (e_value=2e-180) Probable peptide/nitrate transporter At5g28470 OS=Arabidopsis thaliana GN=At5g28470 PE=2 SV=2;; (*TAIR) AT5G28470.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr5:10429813-10432357 FORWARD LENGTH=559;; (*ITAG) Solyc03g113440.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:57639921-57642323 transcript_region:SL2.40ch03:57639921..57642323- go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX4_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00049307g0001.1 protein AED:0.10 eAED:0.22 QI:64|0|0|1|0|0|2|0|201; (*GB) gi|22128589|gb|AAM52340.1| (e_value=3e-83) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q3ECK2|PPR92_ARATH (e_value=4e-48) Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2;; (*TAIR) AT1G62680.1 (e_value=3e-49) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23208247-23209893 REVERSE LENGTH=548;; (*ITAG) Solyc06g007850.2.1 (e_value=1e-85) genomic_reference:SL2.40ch06 gene_region:1750049-1752394 transcript_region:SL2.40ch06:1750049..1752394- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00033823g0004.1 protein AED:0.16 eAED:0.16 QI:0|1|0.75|1|1|1|8|0|516; (*GB) gi|255536819|ref|XP_002509476.1| (e_value=0.0) somatic embryogenesis receptor kinase, putative [Ricinus communis];; (*SWP) sp|Q9ZNQ8|PERK4_ARATH (e_value=2e-172) Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1;; (*TAIR) AT2G18470.1 (e_value=2e-173) | Symbols: PERK4 | roline-rich extensin-like receptor kinase 4 | chr2:8005285-8007767 REVERSE LENGTH=633;; (*ITAG) Solyc11g044460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35703663-35706570 transcript_region:SL2.40ch11:35703663..35706570+ go_terms:GO:0006468 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-*- RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00035325g0009.1 protein AED:0.16 eAED:0.16 QI:0|0.81|0.75|1|0.81|0.75|12|0|684; (*GB) gi|255561612|ref|XP_002521816.1| (e_value=0.0) radical sam protein, putative [Ricinus communis];; (*SWP) sp|Q6P4Y0|CDKAL_XENTR (e_value=3e-167) Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis GN=cdkal1 PE=2 SV=1;; (*TAIR) AT1G72090.1 (e_value=0.0) | Symbols: | Methylthiotransferase | chr1:27123617-27126767 FORWARD LENGTH=601;; (*ITAG) Solyc11g022390.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:13722567-13735038 transcript_region:SL2.40ch11:13722567..13735038+ go_terms:GO:0008152,GO:0051536,GO:0009451 functional_description:"(Dimethylallyl)adenosine tRNA methylthiotransferase miaB (AHRD V1 ***- MIAB_SULSY); contains Interpro domain(s) IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type "; GO:0008152,GO:0051536,GO:0009451 NbS00035325g0002.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|1023; (*GB) gi|225460739|ref|XP_002273003.1| (e_value=0.0) PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9BQG1|SYT3_HUMAN (e_value=5e-13) Synaptotagmin-3 OS=Homo sapiens GN=SYT3 PE=2 SV=1;; (*TAIR) AT1G22610.1 (e_value=0.0) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr1:7994478-7997567 FORWARD LENGTH=1029;; (*ITAG) Solyc11g022400.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13735532-13738501 transcript_region:SL2.40ch11:13735532..13738501- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00029106g0001.1 protein AED:0.49 eAED:0.67 QI:0|0.4|0.33|0.66|1|1|6|0|269; (*GB) gi|296085890|emb|CBI31214.3| (e_value=8e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G09360.1 (e_value=1e-15) | Symbols: | Cyclin/Brf1-like TBP-binding protein | chr3:2873796-2878432 FORWARD LENGTH=604;; (*ITAG) Solyc01g088720.2.1 (e_value=3e-64) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00029106g0008.1 protein AED:0.03 eAED:0.03 QI:264|1|1|1|0.25|0.2|5|484|297; (*GB) gi|225429187|ref|XP_002275857.1| (e_value=1e-124) PREDICTED: dnaJ homolog subfamily C member 17-like [Vitis vinifera];; (*SWP) sp|Q91WT4|DJC17_MOUSE (e_value=3e-23) DnaJ homolog subfamily C member 17 OS=Mus musculus GN=Dnajc17 PE=2 SV=1;; (*TAIR) AT5G23590.2 (e_value=2e-108) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr5:7953870-7954936 REVERSE LENGTH=296;; (*ITAG) Solyc01g088730.2.1 (e_value=5e-176) genomic_reference:SL2.40ch01 gene_region:75260000-75262665 transcript_region:SL2.40ch01:75260000..75262665- go_terms:GO:0042803,GO:0002020 functional_description:"Chaperone protein DnaJ (AHRD V1 *-*- A6CVH2_9VIBR); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0042803,GO:0002020 NbS00000321g0004.1 protein AED:0.06 eAED:0.06 QI:394|0.5|0.66|1|1|1|3|317|516; (*GB) gi|359485707|ref|XP_002281337.2| (e_value=0.0) PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Vitis vinifera];; (*SWP) sp|Q9C5J4|Y3210_ARATH (e_value=2e-117) BTB/POZ domain-containing protein At3g22104 OS=Arabidopsis thaliana GN=At3g22104 PE=2 SV=1;; (*TAIR) AT3G22104.1 (e_value=2e-118) | Symbols: | Phototropic-responsive NPH3 family protein | chr3:7789814-7792179 FORWARD LENGTH=506;; (*ITAG) Solyc07g052970.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:58708041-58710971 transcript_region:SL2.40ch07:58708041..58710971+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7LA45_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00000321g0003.1 protein AED:0.19 eAED:0.24 QI:340|0|0.66|1|0|0.33|3|60|118; (*GB) gi|225447415|ref|XP_002281574.1| (e_value=4e-45) PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9 [Vitis vinifera];; (*SWP) sp|Q8LDW9|XTH9_ARATH (e_value=1e-27) Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2;; (*TAIR) AT4G03210.2 (e_value=4e-29) | Symbols: XTH9 | xyloglucan endotransglucosylase/hydrolase 9 | chr4:1416107-1417197 FORWARD LENGTH=262;; (*ITAG) Solyc07g052980.2.1 (e_value=1e-46) genomic_reference:SL2.40ch07 gene_region:58724756-58726704 transcript_region:SL2.40ch07:58724756..58726704+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRH8_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00000321g0021.1 protein AED:0.28 eAED:0.56 QI:0|0|0|1|0.4|0.5|6|0|421; (*GB) gi|356558507|ref|XP_003547547.1| (e_value=1e-44) PREDICTED: LOW QUALITY PROTEIN: DNA polymerase-like [Glycine max];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=5e-22) DNA polymerase OS=Zea mays PE=3 SV=1; NbS00000321g0012.1 protein AED:0.90 eAED:1.00 QI:0|0|0|0.33|1|1|3|0|109; (*GB) gi|187372958|gb|ACD03213.1| (e_value=5e-35) xyloglucan endotransglucosylase/hydrolase 3 [Actinidia eriantha];; (*SWP) sp|Q8LDW9|XTH9_ARATH (e_value=1e-29) Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2;; (*TAIR) AT4G03210.1 (e_value=8e-31) | Symbols: XTH9 | xyloglucan endotransglucosylase/hydrolase 9 | chr4:1416019-1417197 FORWARD LENGTH=290;; (*ITAG) Solyc07g052980.2.1 (e_value=1e-40) genomic_reference:SL2.40ch07 gene_region:58724756-58726704 transcript_region:SL2.40ch07:58724756..58726704+ go_terms:GO:0016798 functional_description:"Xyloglucan endotransglucosylase/hydrolase 5 (AHRD V1 **** C0IRH8_MALDO); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0016798 NbS00000321g0008.1 protein AED:0.38 eAED:0.38 QI:0|0|0|1|1|1|2|0|67 NbS00000321g0016.1 protein AED:0.51 eAED:0.51 QI:84|0|0|0.6|0|0|5|0|229; (*GB) gi|57013878|ref|YP_173352.1| (e_value=9e-68) hypothetical protein NitaMp002 [Nicotiana tabacum];; (*ITAG) Solyc11g030910.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:20056038-20058551 transcript_region:SL2.40ch11:20056038..20058551- functional_description:"Unknown Protein (AHRD V1)"; NbS00000321g0019.1 protein AED:0.28 eAED:0.42 QI:0|0|0|1|0|0|2|0|87 NbS00000321g0020.1 protein AED:0.39 eAED:0.76 QI:0|0|0|1|0|0|2|0|61 NbS00015144g0001.1 protein AED:0.16 eAED:0.16 QI:0|-1|0|1|-1|1|1|0|423; (*GB) gi|147795390|emb|CAN67605.1| (e_value=1e-43) hypothetical protein VITISV_030993 [Vitis vinifera];; (*ITAG) Solyc03g115420.1.1 (e_value=4e-122) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:59193429-59194628 transcript_region:SL2.40ch03:59193429..59194628- functional_description:"F-box domain containing protein (AHRD V1 ***- Q2QXK7_ORYSJ); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00022712g0001.1 protein AED:0.47 eAED:0.63 QI:61|0|0|0.5|1|0.5|2|0|79 NbS00027375g0006.1 protein AED:0.02 eAED:0.02 QI:91|1|1|1|1|1|11|131|640; (*GB) gi|225440706|ref|XP_002280545.1| (e_value=0.0) PREDICTED: exocyst complex component 7 isoform 1 [Vitis vinifera];; (*SWP) sp|O54922|EXOC7_RAT (e_value=3e-51) Exocyst complex component 7 OS=Rattus norvegicus GN=Exoc7 PE=2 SV=1;; (*TAIR) AT5G52340.1 (e_value=0.0) | Symbols: ATEXO70A2, EXO70A2 | exocyst subunit exo70 family protein A2 | chr5:21250802-21253939 FORWARD LENGTH=631;; (*ITAG) Solyc10g081940.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62197221-62200448 transcript_region:SL2.40ch10:62197221..62200448+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00016139g0007.1 protein AED:0.04 eAED:0.04 QI:4119|1|1|1|0.25|0.33|9|983|90; (*GB) gi|147852421|emb|CAN81280.1| (e_value=1e-23) hypothetical protein VITISV_041831 [Vitis vinifera];; (*SWP) sp|Q0WRB0|FACR5_ARATH (e_value=6e-23) Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1;; (*TAIR) AT3G44550.1 (e_value=5e-24) | Symbols: FAR5 | fatty acid reductase 5 | chr3:16138060-16141409 FORWARD LENGTH=496;; (*ITAG) Solyc01g104200.2.1 (e_value=8e-38) genomic_reference:SL2.40ch01 gene_region:84406092-84409241 transcript_region:SL2.40ch01:84406092..84409241- go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00025119g0008.1 protein AED:0.28 eAED:0.28 QI:262|1|1|1|1|1|4|501|219; (*GB) gi|356516327|ref|XP_003526847.1| (e_value=8e-63) PREDICTED: uncharacterized protein LOC100804034 [Glycine max];; (*TAIR) AT5G09850.1 (e_value=3e-61) | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:3063488-3065221 REVERSE LENGTH=353;; (*ITAG) Solyc11g005450.1.1 (e_value=2e-105) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:359146-361493 transcript_region:SL2.40ch11:359146..361493- go_terms:GO:0005634 functional_description:"Transcription elongation factor A protein 3 (AHRD V1 *--- TCEA3_BOVIN); contains Interpro domain(s) IPR010990 Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal "; GO:0005634 NbS00025119g0015.1 protein AED:0.07 eAED:0.11 QI:0|0|0|1|0|0|4|0|591; (*GB) gi|225431392|ref|XP_002272192.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100259153 [Vitis vinifera];; (*TAIR) AT5G09840.1 (e_value=3e-135) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00032042g0004.1 protein AED:0.26 eAED:0.26 QI:173|1|1|1|0|0|3|296|118; (*GB) gi|4097587|gb|AAD00119.1| (e_value=5e-81) NTGP5 [Nicotiana tabacum];; (*SWP) sp|Q8GWJ6|MUB6_ARATH (e_value=1e-53) Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1;; (*TAIR) AT1G22050.1 (e_value=1e-54) | Symbols: MUB6 | membrane-anchored ubiquitin-fold protein 6 precursor | chr1:7771897-7772843 FORWARD LENGTH=119;; (*ITAG) Solyc12g056900.1.1 (e_value=2e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:48320357-48324502 transcript_region:SL2.40ch12:48320357..48324502- functional_description:"Membrane-anchored ubiquitin-fold protein 2 (AHRD V1 ***- D7M7C8_ARALY); contains Interpro domain(s) IPR017000 Membrane-anchored ubiquitin-fold protein, HCG-1 "; NbS00001096g0005.1 protein AED:0.19 eAED:0.19 QI:0|0|0|1|0|0|2|0|669; (*GB) gi|129593742|gb|ABO31111.1| (e_value=0.0) sphingolipid delta-8 desaturase [Nicotiana tabacum];; (*SWP) sp|Q9DEX7|FADS2_DANRE (e_value=1e-28) Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1;; (*TAIR) AT2G46210.1 (e_value=4e-175) | Symbols: | Fatty acid/sphingolipid desaturase | chr2:18977542-18978891 FORWARD LENGTH=449;; (*ITAG) Solyc08g063090.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:49879906-49881913 transcript_region:SL2.40ch08:49879906..49881913+ go_terms:GO:0004768,GO:0042284 functional_description:"Delta-6-desaturase (AHRD V1 **** D3YN48_9ERIC); contains Interpro domain(s) IPR012171 Fatty acid/sphingolipid desaturase "; GO:0004768,GO:0042284 NbS00001096g0111.1 protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|2|378|481 NbS00001096g0113.1 protein AED:0.06 eAED:0.08 QI:0|0.5|0|1|0.5|0.33|3|0|434 NbS00001096g0112.1 protein AED:0.26 eAED:0.26 QI:177|1|1|1|1|1|7|453|287 NbS00012693g0010.1 protein AED:0.08 eAED:0.09 QI:0|0.87|0.77|1|0.75|0.55|9|777|717; (*GB) gi|356516077|ref|XP_003526723.1| (e_value=0.0) PREDICTED: KH domain-containing protein At4g18375-like [Glycine max];; (*SWP) sp|P58223|Y4837_ARATH (e_value=7e-20) KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1;; (*TAIR) AT5G53060.1 (e_value=0.0) | Symbols: | RNA-binding KH domain-containing protein | chr5:21515355-21518197 FORWARD LENGTH=652;; (*ITAG) Solyc03g082980.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46373895-46380618 transcript_region:SL2.40ch03:46373895..46380618+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00012693g0009.1 protein AED:0.36 eAED:0.36 QI:126|0.44|0.4|0.9|0.66|0.6|10|0|505; (*GB) gi|224135115|ref|XP_002321987.1| (e_value=3e-154) predicted protein [Populus trichocarpa];; (*TAIR) AT5G53080.1 (e_value=1e-137) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21520624-21523158 FORWARD LENGTH=564;; (*ITAG) Solyc03g082990.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:46382484-46388093 transcript_region:SL2.40ch03:46382484..46388093+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat containing protein (AHRD V1 ***- D7FXH0_ECTSI); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00027230g0001.1 protein AED:0.13 eAED:0.13 QI:189|0.87|0.88|1|0|0.33|9|0|337; (*GB) gi|350538651|ref|NP_001234353.1| (e_value=0.0) SNF1-related kinase [Solanum lycopersicum];; (*SWP) sp|Q75LR7|SAPK1_ORYSJ (e_value=0.0) Serine/threonine-protein kinase SAPK1 OS=Oryza sativa subsp. japonica GN=SAPK1 PE=1 SV=1;; (*TAIR) AT1G78290.3 (e_value=2e-169) | Symbols: | Protein kinase superfamily protein | chr1:29457457-29458909 REVERSE LENGTH=343;; (*ITAG) Solyc04g012160.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4446264-4449928 transcript_region:SL2.40ch04:4446264..4449928+ go_terms:GO:0006970,GO:0006468 functional_description:"Serine-threonine protein kinase (AHRD V1 ***- Q09VQ1_WHEAT); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006970,GO:0006468 NbS00027230g0010.1 protein AED:0.78 eAED:0.78 QI:0|0|0|0.33|1|0.66|3|0|87 NbS00011590g0011.1 protein AED:0.05 eAED:0.05 QI:156|1|1|1|0|0|4|533|85; (*GB) gi|118489907|gb|ABK96751.1| (e_value=1e-27) unknown [Populus trichocarpa x Populus deltoides];; (*TAIR) AT5G03460.1 (e_value=2e-21) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:864391-865509 FORWARD LENGTH=89;; (*ITAG) Solyc09g008340.2.1 (e_value=4e-48) genomic_reference:SL2.40ch09 gene_region:1804838-1809925 transcript_region:SL2.40ch09:1804838..1809925+ functional_description:"F12E4.230-like protein (Fragment) (AHRD V1 ***- Q5YJQ6_HYAOR)"; NbS00011590g0012.1 protein AED:0.11 eAED:0.14 QI:120|0.58|0.84|1|0.58|0.76|13|148|659; (*GB) gi|297739968|emb|CBI30150.3| (e_value=8e-173) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6PCD5|RFWD3_HUMAN (e_value=6e-18) E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1 SV=3;; (*TAIR) AT5G03450.1 (e_value=1e-122) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630;; (*ITAG) Solyc09g008330.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00007480g0006.1 protein AED:0.21 eAED:0.21 QI:80|0.5|0.33|0.66|1|1|3|0|150 NbS00061164g0002.1 protein AED:0.23 eAED:0.57 QI:0|0|0|1|0|0|2|0|212; (*GB) gi|357435983|ref|XP_003588267.1| (e_value=4e-49) hypothetical protein MTR_1g005080 [Medicago truncatula];; (*ITAG) Solyc06g074580.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42529140-42529313 transcript_region:SL2.40ch06:42529140..42529313- functional_description:"Unknown Protein (AHRD V1)"; NbS00031454g0003.1 protein AED:0.09 eAED:0.09 QI:0|1|0.66|1|1|1|3|579|556; (*GB) gi|225441959|ref|XP_002264087.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100254979 isoform 1 [Vitis vinifera];; (*TAIR) AT5G50420.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:20530453-20532635 REVERSE LENGTH=566;; (*ITAG) Solyc06g063120.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36260867-36264210 transcript_region:SL2.40ch06:36260867..36264210+ functional_description:"Protein-O-fucosyltransferase-like protein (AHRD V1 ***- D8RI05_SELML); contains Interpro domain(s) IPR019378 GDP-fucose protein O-fucosyltransferase "; NbS00023808g0001.1 protein AED:0.13 eAED:0.14 QI:0|1|0.5|1|1|1|2|0|164; (*GB) gi|82400154|gb|ABB72816.1| (e_value=5e-77) ribosomal protein L24-like protein [Solanum tuberosum];; (*SWP) sp|O65743|RL24_CICAR (e_value=9e-76) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT2G36620.1 (e_value=1e-75) | Symbols: RPL24A | ribosomal protein L24 | chr2:15350548-15351819 REVERSE LENGTH=164;; (*ITAG) Solyc10g085480.1.1 (e_value=2e-79) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63963193-63965907 transcript_region:SL2.40ch10:63963193..63965907+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbS00023808g0003.1 protein AED:0.39 eAED:0.40 QI:0|0|0|0.5|1|1|2|0|112; (*GB) gi|356521895|ref|XP_003529586.1| (e_value=2e-53) PREDICTED: monothiol glutaredoxin-S2-like [Glycine max];; (*SWP) sp|Q8L8Z8|GRXS2_ARATH (e_value=1e-49) Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1;; (*TAIR) AT5G18600.1 (e_value=9e-51) | Symbols: | Thioredoxin superfamily protein | chr5:6183466-6183774 REVERSE LENGTH=102;; (*ITAG) Solyc01g067460.1.1 (e_value=5e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:68546175-68546483 transcript_region:SL2.40ch01:68546175..68546483+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 ***- D7MAF1_ARALY); contains Interpro domain(s) IPR011905 Glutaredoxin-like, plant II "; GO:0045454 NbS00023808g0111.1 protein AED:0.24 eAED:0.24 QI:0|0|0|1|0|0|4|0|252 NbS00023808g0110.1 protein AED:0.29 eAED:0.33 QI:0|0|0|0.75|0|0|4|0|226 NbS00023808g0109.1 protein AED:0.43 eAED:0.43 QI:0|0|0|1|0|0|2|0|113 NbS00021069g0005.1 protein AED:0.09 eAED:0.09 QI:328|0.91|0.84|1|0.66|0.76|13|833|904; (*GB) gi|224137054|ref|XP_002322482.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|O22040|ANP1_ARATH (e_value=6e-84) Mitogen-activated protein kinase kinase kinase ANP1 OS=Arabidopsis thaliana GN=ANP1 PE=1 SV=2;; (*TAIR) AT1G63700.1 (e_value=0.0) | Symbols: EMB71, YDA, MAPKKK4 | Protein kinase superfamily protein | chr1:23625208-23629031 REVERSE LENGTH=883;; (*ITAG) Solyc06g036080.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:22156308-22166784 transcript_region:SL2.40ch06:22156308..22166784- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00030131g0001.1 protein AED:0.07 eAED:0.07 QI:217|1|1|1|0.8|0.66|6|615|159; (*GB) gi|78100187|sp|P69039.1|IF5A1_NICPL (e_value=5e-114) RecName: Full=Eukaryotic translation initiation factor 5A-1; Short=eIF-5A-1; AltName: Full=eIF-4D;; (*SWP) sp|P69040|IF5A1_TOBAC (e_value=2e-115) Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1;; (*TAIR) AT1G13950.1 (e_value=3e-101) | Symbols: EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | eukaryotic elongation factor 5A-1 | chr1:4773631-4774668 FORWARD LENGTH=158;; (*ITAG) Solyc03g115650.2.1 (e_value=4e-112) genomic_reference:SL2.40ch03 gene_region:59340664-59343595 transcript_region:SL2.40ch03:59340664..59343595+ go_terms:GO:0003743,GO:0047485 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 **** D6N3G5_GOSHI); contains Interpro domain(s) IPR001884 Translation elongation factor, IF5A "; GO:0003743,GO:0047485 NbS00001362g0001.1 protein AED:0.03 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|161; (*GB) gi|147853040|emb|CAN82321.1| (e_value=2e-66) hypothetical protein VITISV_021316 [Vitis vinifera];; (*SWP) sp|O82248|NFYB5_ARATH (e_value=3e-57) Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1;; (*TAIR) AT2G47810.1 (e_value=3e-58) | Symbols: NF-YB5 | nuclear factor Y, subunit B5 | chr2:19582938-19583420 REVERSE LENGTH=160;; (*ITAG) Solyc09g074760.1.1 (e_value=9e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62067379-62067795 transcript_region:SL2.40ch09:62067379..62067795- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00001362g0013.1 protein AED:0.17 eAED:0.18 QI:0|0.52|0.55|0.94|0.35|0.44|18|0|740; (*GB) gi|240256047|ref|NP_194068.5| (e_value=4e-64) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT4G23370.1 (e_value=8e-67) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23360.1); Has 2365 Blast hits to 710 proteins in 27 species: Archae - 0; Bacteria - 35; Metazoa - 0; Fungi - 30; Plants - 2300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12206362-12213435 REVERSE LENGTH=1038;; (*ITAG) Solyc09g098470.1.1 (e_value=9e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67552195-67554246 transcript_region:SL2.40ch09:67552195..67554246+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase-like (AHRD V1 ***- Q6ZAJ4_ORYSJ); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00001362g0002.1 protein AED:0.32 eAED:0.32 QI:0|0.6|0.5|1|1|1|6|34|336; (*GB) gi|168029429|ref|XP_001767228.1| (e_value=1e-85) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=1e-68) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=1e-69) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc09g074790.1.1 (e_value=1e-89) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:62097466-62102002 transcript_region:SL2.40ch09:62097466..62102002- go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00001362g0015.1 protein AED:0.40 eAED:0.40 QI:0|0|0|1|0|0|2|0|188; (*GB) gi|296086596|emb|CBI32231.3| (e_value=3e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MS3|HAK16_ORYSJ (e_value=1e-44) Probable potassium transporter 16 OS=Oryza sativa subsp. japonica GN=HAK16 PE=2 SV=1;; (*TAIR) AT4G13420.1 (e_value=4e-42) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc09g074800.2.1 (e_value=4e-95) genomic_reference:SL2.40ch09 gene_region:62114773-62119936 transcript_region:SL2.40ch09:62114773..62119936- go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00000992g0008.1 protein AED:0.29 eAED:0.29 QI:205|0.72|0.83|1|0.54|0.41|12|0|816; (*GB) gi|255543489|ref|XP_002512807.1| (e_value=0.0) Potassium transporter, putative [Ricinus communis];; (*SWP) sp|Q942X8|HAK2_ORYSJ (e_value=0.0) Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1;; (*TAIR) AT1G70300.1 (e_value=0.0) | Symbols: KUP6 | K+ uptake permease 6 | chr1:26477993-26481233 REVERSE LENGTH=782;; (*ITAG) Solyc12g017910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7757083-7763435 transcript_region:SL2.40ch12:7757083..7763435- go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T722_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00054389g0001.1 protein AED:0.23 eAED:0.23 QI:0|-1|0|1|-1|1|1|0|291; (*GB) gi|224103493|ref|XP_002313078.1| (e_value=2e-117) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49470.1 (e_value=4e-86) | Symbols: | Family of unknown function (DUF716) | chr1:18310554-18311462 FORWARD LENGTH=302;; (*ITAG) Solyc10g050430.1.1 (e_value=6e-172) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45226981-45227862 transcript_region:SL2.40ch10:45226981..45227862+ go_terms:GO:0006810 functional_description:"Plant viral-response family protein (AHRD V1 **-- B6SQA7_MAIZE); contains Interpro domain(s) IPR006904 Protein of unknown function DUF716 "; GO:0006810 NbS00054389g0004.1 protein AED:0.09 eAED:0.09 QI:2259|1|1|1|0.5|0.33|3|244|145; (*GB) gi|356545381|ref|XP_003541122.1| (e_value=3e-66) PREDICTED: uncharacterized protein LOC100813820 [Glycine max];; (*TAIR) AT3G11800.1 (e_value=2e-65) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44150.1); Has 74 Blast hits to 73 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr3:3726154-3727562 FORWARD LENGTH=246;; (*ITAG) Solyc10g050450.1.1 (e_value=1e-92) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45240476-45242855 transcript_region:SL2.40ch10:45240476..45242855+ functional_description:"Expp1 protein (AHRD V1 ***- B6T683_MAIZE)"; NbS00054389g0005.1 protein AED:0.12 eAED:0.21 QI:0|0|0|1|0|0|2|0|90 NbS00005868g0007.1 protein AED:0.21 eAED:0.21 QI:161|0.92|0.93|1|0.82|0.82|29|442|1238; (*GB) gi|225430654|ref|XP_002268225.1| (e_value=0.0) PREDICTED: protein PIR-like [Vitis vinifera];; (*SWP) sp|Q5S2C3|PIR_ARATH (e_value=0.0) Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2;; (*TAIR) AT5G18410.2 (e_value=0.0) | Symbols: PIR, KLK, PIR121, SRA1, PIRP | transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1282;; (*ITAG) Solyc11g013280.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6186161-6211407 transcript_region:SL2.40ch11:6186161..6211407- functional_description:"Cytoplasmic FMR1 interacting protein 2 (AHRD V1 ***- A5A5E1_DANRE); contains Interpro domain(s) IPR008081 Cytoplasmic FMR1-interacting "; NbS00026080g0001.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|0|0|2|0|98 NbS00029994g0001.1 protein AED:0.03 eAED:0.03 QI:459|1|1|1|0.5|0.33|3|400|332; (*GB) gi|356529255|ref|XP_003533211.1| (e_value=1e-106) PREDICTED: heat stress transcription factor B-2a-like [Glycine max];; (*SWP) sp|Q9T0D3|HFB2B_ARATH (e_value=2e-86) Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1;; (*TAIR) AT4G11660.1 (e_value=1e-87) | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding transcription factor family protein | chr4:7043006-7044227 FORWARD LENGTH=377;; (*ITAG) Solyc03g026020.2.1 (e_value=1e-155) genomic_reference:SL2.40ch03 gene_region:7810489-7812280 transcript_region:SL2.40ch03:7810489..7812280+ go_terms:GO:0003677 functional_description:"Heat stress transcription factor (AHRD V1 *-*- D4QAU8_CARPA); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003677 NbS00036166g0007.1 protein AED:0.29 eAED:0.29 QI:0|0.66|0.6|0.9|0.77|0.8|10|0|855; (*GB) gi|297739065|emb|CBI28554.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94AJ5|PGLR5_ARATH (e_value=1e-113) Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1;; (*TAIR) AT1G23460.1 (e_value=0.0) | Symbols: | Pectin lyase-like superfamily protein | chr1:8327382-8329622 FORWARD LENGTH=460;; (*ITAG) Solyc04g025440.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:20488981-20492335 transcript_region:SL2.40ch04:20488981..20492335+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9SLP3_CUCSA); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00036166g0006.1 protein AED:0.42 eAED:1.00 QI:0|0|0|1|0|0|2|0|281; (*GB) gi|359473235|ref|XP_003631274.1| (e_value=1e-64) PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q56X05|PPR15_ARATH (e_value=2e-28) Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2;; (*TAIR) AT1G23450.1 (e_value=2e-55) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8324698-8326697 FORWARD LENGTH=666;; (*ITAG) Solyc04g025430.1.1 (e_value=6e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:20486364-20488334 transcript_region:SL2.40ch04:20486364..20488334+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00040692g0001.1 protein AED:0.02 eAED:0.03 QI:67|1|0.5|1|0|0.5|2|0|204; (*GB) gi|20149062|gb|AAM12786.1| (e_value=7e-99) unknown [Capsicum annuum];; (*SWP) sp|Q9FGS5|NRT31_ARATH (e_value=5e-52) High-affinity nitrate transporter 3.1 OS=Arabidopsis thaliana GN=NRT3.1 PE=1 SV=1;; (*TAIR) AT5G50200.1 (e_value=4e-53) | Symbols: WR3, ATNRT3.1, NRT3.1 | nitrate transmembrane transporters | chr5:20436612-20437535 FORWARD LENGTH=210;; (*ITAG) Solyc03g112100.2.1 (e_value=2e-99) genomic_reference:SL2.40ch03 gene_region:56672702-56674150 transcript_region:SL2.40ch03:56672702..56674150- go_terms:GO:0015112 functional_description:"Component of high affinity nitrate transporter (AHRD V1 **-* D2KTV0_LOTJA); contains Interpro domain(s) IPR016605 Transporter, high affinity nitrate, Nar2 "; GO:0015112 NbS00033121g0030.1 protein AED:0.08 eAED:0.08 QI:84|0.33|0.5|1|1|1|4|26|494; (*GB) gi|224125298|ref|XP_002319551.1| (e_value=3e-163) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFU0|DOT3_ARATH (e_value=9e-74) Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1;; (*TAIR) AT5G10250.1 (e_value=7e-75) | Symbols: DOT3 | Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607;; (*ITAG) Solyc01g098820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80989681-80991894 transcript_region:SL2.40ch01:80989681..80991894+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00033121g0021.1 protein AED:0.18 eAED:0.18 QI:92|1|0.85|1|0.83|0.85|7|350|269; (*GB) gi|296088311|emb|CBI36756.3| (e_value=3e-112) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G05250.1 (e_value=1e-89) | Symbols: | RING/U-box superfamily protein | chr3:1495635-1497387 FORWARD LENGTH=278;; (*ITAG) Solyc01g098830.2.1 (e_value=2e-161) genomic_reference:SL2.40ch01 gene_region:80993286-80997091 transcript_region:SL2.40ch01:80993286..80997091+ go_terms:GO:0008270 functional_description:"RING zinc finger protein-like protein (AHRD V1 **-- Q84KA3_CUCME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00033121g0032.1 protein AED:0.25 eAED:0.28 QI:0|0.4|0.66|1|0.4|0.5|6|420|311; (*GB) gi|16417946|gb|AAL18925.1|AF429384_1 (e_value=3e-83) mevalonate kinase [Hevea brasiliensis];; (*SWP) sp|P46086|KIME_ARATH (e_value=6e-62) Mevalonate kinase OS=Arabidopsis thaliana GN=At5g27450 PE=2 SV=1;; (*TAIR) AT5G27450.3 (e_value=4e-63) | Symbols: MK | mevalonate kinase | chr5:9691051-9692975 FORWARD LENGTH=378;; (*ITAG) Solyc01g098840.2.1 (e_value=3e-108) genomic_reference:SL2.40ch01 gene_region:80999140-81004317 transcript_region:SL2.40ch01:80999140..81004317+ go_terms:GO:0004496 functional_description:"Mevalonate kinase (AHRD V1 **** Q944G2_HEVBR); contains Interpro domain(s) IPR006205 Mevalonate kinase "; GO:0004496 NbS00033121g0018.1 protein AED:0.30 eAED:0.30 QI:467|1|1|1|1|1|2|205|488; (*GB) gi|296088310|emb|CBI36755.3| (e_value=5e-68) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G54850.1 (e_value=1e-55) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20454440-20455994 FORWARD LENGTH=206;; (*ITAG) Solyc01g098790.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:80974445-80976074 transcript_region:SL2.40ch01:80974445..80976074+ functional_description:"Heat shock protein-like protein (AHRD V1 *-*- Q84KA7_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00033121g0028.1 protein AED:0.36 eAED:0.36 QI:264|1|0.75|1|0.66|0.5|4|478|236; (*GB) gi|255542588|ref|XP_002512357.1| (e_value=3e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G54850.1 (e_value=3e-58) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20454440-20455994 FORWARD LENGTH=206;; (*ITAG) Solyc01g098810.2.1 (e_value=4e-130) genomic_reference:SL2.40ch01 gene_region:80983941-80987706 transcript_region:SL2.40ch01:80983941..80987706+ functional_description:"Heat shock protein-like protein (AHRD V1 ***- Q84KA6_CUCME); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00033121g0024.1 protein AED:0.02 eAED:0.02 QI:109|1|1|1|1|1|2|417|541; (*GB) gi|359487726|ref|XP_003633638.1| (e_value=0.0) PREDICTED: putative sodium/calcium exchanger 7-like isoform 2 [Vitis vinifera];; (*SWP) sp|O04034|CCX5_ARATH (e_value=0.0) Cation/calcium exchanger 5 OS=Arabidopsis thaliana GN=CCX5 PE=2 SV=1;; (*TAIR) AT1G08960.1 (e_value=0.0) | Symbols: CAX11, ATCAX11 | cation exchanger 11 | chr1:2879698-2881877 FORWARD LENGTH=546;; (*ITAG) Solyc01g098800.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80976356-80981277 transcript_region:SL2.40ch01:80976356..80981277- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 *-** C5PBJ7_COCP7); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00033121g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|439; (*GB) gi|147821120|emb|CAN68737.1| (e_value=1e-137) hypothetical protein VITISV_030194 [Vitis vinifera];; (*SWP) sp|P13917|7SB1_SOYBN (e_value=4e-118) Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2;; (*TAIR) AT1G03220.1 (e_value=2e-96) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:787143-788444 FORWARD LENGTH=433;; (*ITAG) Solyc01g098770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80967402-80968685 transcript_region:SL2.40ch01:80967402..80968685- go_terms:GO:0006508 functional_description:"Xylanase inhibitor (Fragment) (AHRD V1 **-- Q53IQ4_WHEAT); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00033121g0007.1 protein AED:0.23 eAED:0.23 QI:27|0.5|0.6|1|1|1|5|104|373; (*GB) gi|357441633|ref|XP_003591094.1| (e_value=6e-176) Glucose and ribitol dehydrogenase [Medicago truncatula];; (*SWP) sp|Q5KTS5|GRDH_DAUCA (e_value=6e-167) Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1;; (*TAIR) AT1G54870.1 (e_value=3e-170) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:20459011-20460417 FORWARD LENGTH=335;; (*ITAG) Solyc01g098850.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81004479-81006268 transcript_region:SL2.40ch01:81004479..81006268- go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7L3S3_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00033121g0023.1 protein AED:0.33 eAED:0.33 QI:0|0.8|0.83|1|1|1|6|612|171; (*GB) gi|351725135|ref|NP_001236058.1| (e_value=5e-94) uncharacterized protein LOC100499788 precursor [Glycine max];; (*SWP) sp|Q53YF3|SPC3B_ARATH (e_value=2e-88) Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1;; (*TAIR) AT5G27430.1 (e_value=2e-89) | Symbols: | Signal peptidase subunit | chr5:9687470-9689185 FORWARD LENGTH=167;; (*ITAG) Solyc01g098780.2.1 (e_value=7e-107) genomic_reference:SL2.40ch01 gene_region:80969274-80972870 transcript_region:SL2.40ch01:80969274..80972870- go_terms:GO:0005515,GO:0008233 functional_description:"Signal peptidase complex subunit 3 (AHRD V1 **** B0XD98_CULQU); contains Interpro domain(s) IPR007653 Signal peptidase 22 kDa subunit "; GO:0005515,GO:0008233 NbS00033531g0007.1 protein AED:0.20 eAED:0.20 QI:0|1|0.8|1|0.75|0.6|5|0|345; (*GB) gi|255570075|ref|XP_002526000.1| (e_value=5e-136) cleavage and polyadenylation specificity factor, putative [Ricinus communis];; (*SWP) sp|Q8GUU2|RIE1_ARATH (e_value=3e-114) E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1;; (*TAIR) AT1G68070.1 (e_value=1e-137) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:25515412-25516767 REVERSE LENGTH=343;; (*ITAG) Solyc04g008020.2.1 (e_value=4e-177) genomic_reference:SL2.40ch04 gene_region:1674930-1680865 transcript_region:SL2.40ch04:1674930..1680865- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00007974g0009.1 protein AED:0.07 eAED:0.10 QI:0|0.57|0.25|1|0.57|0.37|8|9|517; (*GB) gi|343197034|gb|AEM05853.1| (e_value=0.0) camphene/tricyclene synthase [Solanum lycopersicum];; (*SWP) sp|Q93X23|MYRS_QUEIL (e_value=2e-174) Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1;; (*TAIR) AT4G16730.1 (e_value=1e-137) | Symbols: TPS02 | terpene synthase 02 | chr4:9403119-9406003 FORWARD LENGTH=539;; (*ITAG) Solyc01g105870.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:85651702-85655605 transcript_region:SL2.40ch01:85651702..85655605+ go_terms:GO:0034768,GO:0050551 functional_description:"(E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0034768,GO:0050551 NbS00007974g0010.1 protein AED:0.28 eAED:0.38 QI:0|0|0|1|0.33|0.75|4|0|217; (*GB) gi|58531896|gb|AAW78660.1| (e_value=4e-60) cysteine protease [Nicotiana tabacum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=1e-53) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=6e-48) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=2e-55) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- go_terms:GO:0004197 functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "; GO:0004197 NbS00034282g0002.1 protein AED:0.04 eAED:0.05 QI:0|0|0.5|1|0|0.5|2|4639|406; (*GB) gi|297736301|emb|CBI24939.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SCP4|PP279_ARATH (e_value=4e-156) Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1;; (*TAIR) AT3G53170.1 (e_value=9e-157) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:19704600-19706417 REVERSE LENGTH=499;; (*ITAG) Solyc08g045780.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:36316245-36319524 transcript_region:SL2.40ch08:36316245..36319524+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LUF3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00001162g0014.1 protein AED:0.37 eAED:0.37 QI:324|1|1|1|0.8|0.83|6|403|218; (*GB) gi|329025150|gb|AEB71558.1| (e_value=2e-149) synaptobrevin/VAMP-like protein [Solanum chacoense];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=2e-150) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=2e-151) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=8e-159) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00046013g0008.1 protein AED:0.18 eAED:0.18 QI:24|0.92|0.73|1|0.92|0.93|15|1386|469; (*GB) gi|255556388|ref|XP_002519228.1| (e_value=2e-168) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g099270.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:64811996-64815585 transcript_region:SL2.40ch12:64811996..64815585- go_terms:GO:0051536 functional_description:"4Fe-4S ferredoxin iron-sulfur binding (AHRD V1 ***- A2Q2W7_MEDTR); contains Interpro domain(s) IPR001450 4Fe-4S ferredoxin, iron-sulphur binding, subgroup "; GO:0051536 NbS00038474g0005.1 protein AED:0.23 eAED:0.23 QI:0|0.77|0.8|1|0.88|0.8|10|0|615; (*GB) gi|350540114|ref|NP_001233879.1| (e_value=0.0) beta-glycosidase-like [Solanum lycopersicum];; (*SWP) sp|Q8L6H7|SFR2_ORYSJ (e_value=0.0) Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1;; (*TAIR) AT3G06510.1 (e_value=0.0) | Symbols: SFR2, ATSFR2 | Glycosyl hydrolase superfamily protein | chr3:2016450-2019533 FORWARD LENGTH=622;; (*ITAG) Solyc01g058140.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:58325669-58338108 transcript_region:SL2.40ch01:58325669..58338108+ go_terms:GO:0008422,GO:0080079 functional_description:"Beta-glucosidase A (AHRD V1 *-** B5YCI2_DICT6); contains Interpro domain(s) IPR018120 Glycoside hydrolase, family 1, active site IPR001360 Glycoside hydrolase, family 1 "; GO:0008422,GO:0080079 NbS00028817g0001.1 protein AED:0.16 eAED:0.19 QI:0|-1|0|1|-1|1|1|0|103; (*GB) gi|359479661|ref|XP_003632323.1| (e_value=3e-27) PREDICTED: uncharacterized protein LOC100852813 [Vitis vinifera];; (*TAIR) AT4G04614.1 (e_value=9e-22) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:2327308-2327914 REVERSE LENGTH=176;; (*ITAG) Solyc09g065510.2.1 (e_value=5e-46) genomic_reference:SL2.40ch09 gene_region:59225609-59228175 transcript_region:SL2.40ch09:59225609..59228175+ functional_description:"C1orf52 homolog (AHRD V1 *-*- B5XC77_SALSA)"; NbS00028817g0006.1 protein AED:0.37 eAED:0.37 QI:0|1|0.71|1|0.83|0.85|7|0|375; (*GB) gi|224085515|ref|XP_002307602.1| (e_value=0.0) homocysteine s-methyltransferase [Populus trichocarpa];; (*SWP) sp|Q9M1W4|HMT2_ARATH (e_value=2e-173) Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1;; (*TAIR) AT3G63250.1 (e_value=2e-174) | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase 2 | chr3:23370575-23372587 REVERSE LENGTH=333;; (*ITAG) Solyc09g065520.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:59228854-59238380 transcript_region:SL2.40ch09:59228854..59238380- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9GSK5_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00037335g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|0|1|0|172; (*GB) gi|224120504|ref|XP_002331064.1| (e_value=2e-71) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g007660.1.1 (e_value=1e-81) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:2309984-2311204 transcript_region:SL2.40ch07:2309984..2311204- functional_description:"Unknown Protein (AHRD V1)"; NbS00003118g0002.1 protein AED:0.36 eAED:0.36 QI:188|1|1|1|0.75|0.6|5|373|209; (*GB) gi|225440594|ref|XP_002273700.1| (e_value=1e-86) PREDICTED: reticulon-like protein B12 [Vitis vinifera];; (*SWP) sp|Q9M392|RTNLL_ARATH (e_value=3e-49) Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1;; (*TAIR) AT3G54120.1 (e_value=2e-50) | Symbols: | Reticulon family protein | chr3:20041269-20042133 REVERSE LENGTH=203;; (*ITAG) Solyc09g013110.2.1 (e_value=7e-105) genomic_reference:SL2.40ch09 gene_region:5513447-5516464 transcript_region:SL2.40ch09:5513447..5516464+ go_terms:GO:0005783 functional_description:"Reticulon family protein (AHRD V1 ***- D7LUQ5_ARALY); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00003118g0011.1 protein AED:0.43 eAED:0.43 QI:0|1|0.5|1|1|1|4|0|127; (*GB) gi|115452107|ref|NP_001049654.1| (e_value=9e-59) Os03g0266000 [Oryza sativa Japonica Group];; (*TAIR) AT2G38025.1 (e_value=5e-55) | Symbols: | Cysteine proteinases superfamily protein | chr2:15915239-15916692 REVERSE LENGTH=234;; (*ITAG) Solyc09g013090.2.1 (e_value=4e-78) genomic_reference:SL2.40ch09 gene_region:5495093-5499967 transcript_region:SL2.40ch09:5495093..5499967+ functional_description:"OTU-like cysteine protease family protein expressed (AHRD V1 **-- Q10NL4_ORYSJ); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; NbS00003118g0014.1 protein AED:0.14 eAED:0.14 QI:351|0.66|0.7|0.9|0.66|0.8|10|330|323; (*GB) gi|350539940|ref|NP_001234584.1| (e_value=0.0) UCP protein [Solanum lycopersicum];; (*SWP) sp|Q9N2I9|UCP3_CANFA (e_value=1e-83) Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1;; (*TAIR) AT3G54110.1 (e_value=2e-177) | Symbols: ATPUMP1, UCP, PUMP1, ATUCP1, UCP1 | plant uncoupling mitochondrial protein 1 | chr3:20038890-20040996 FORWARD LENGTH=306;; (*ITAG) Solyc09g011920.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5178746-5183896 transcript_region:SL2.40ch09:5178746..5183896+ go_terms:GO:0017077 functional_description:"Mitochondrial uncoupling protein (AHRD V1 ***- O24391_SOLTU); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier IPR001993 Mitochondrial substrate carrier "; GO:0017077 NbS00003118g0013.1 protein AED:0.27 eAED:0.28 QI:0|1|0.66|1|1|1|3|0|497; (*GB) gi|225440592|ref|XP_002273666.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100244343 [Vitis vinifera];; (*SWP) sp|Q5ZHZ4|HAKAI_CHICK (e_value=2e-13) E3 ubiquitin-protein ligase Hakai OS=Gallus gallus GN=CBLL1 PE=2 SV=1;; (*TAIR) AT5G01160.1 (e_value=3e-109) | Symbols: | RING/U-box superfamily protein | chr5:54280-55727 FORWARD LENGTH=360;; (*ITAG) Solyc09g013120.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:5516497-5524689 transcript_region:SL2.40ch09:5516497..5524689- go_terms:GO:0005622 functional_description:"E3 ubiquitin-protein ligase Hakai (AHRD V1 *--- C0H8T4_SALSA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00003118g0019.1 protein AED:0.24 eAED:0.41 QI:0|0|0|1|0|0|2|0|71; (*ITAG) Solyc09g011910.2.1 (e_value=8e-18) genomic_reference:SL2.40ch09 gene_region:5172180-5174904 transcript_region:SL2.40ch09:5172180..5174904- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007750 Protein of unknown function DUF674 "; NbS00050321g0007.1 protein AED:0.28 eAED:0.28 QI:203|0.75|0.8|1|0.25|0.4|5|491|234; (*GB) gi|225436878|ref|XP_002273337.1| (e_value=3e-78) PREDICTED: uncharacterized protein LOC100240873 [Vitis vinifera];; (*TAIR) AT2G48070.2 (e_value=7e-69) | Symbols: RPH1 | resistance to phytophthora 1 | chr2:19662863-19663773 FORWARD LENGTH=197;; (*ITAG) Solyc05g055850.2.1 (e_value=2e-118) genomic_reference:SL2.40ch05 gene_region:64473894-64476790 transcript_region:SL2.40ch05:64473894..64476790+ functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q011I1_OSTTA)"; NbS00050321g0006.1 protein AED:0.22 eAED:0.24 QI:0|1|0.25|1|1|1|4|0|470; (*GB) gi|357505343|ref|XP_003622960.1| (e_value=6e-147) Serine/threonine protein kinase [Medicago truncatula];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=1e-143) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT4G13190.1 (e_value=5e-146) | Symbols: | Protein kinase superfamily protein | chr4:7659435-7661106 REVERSE LENGTH=389;; (*ITAG) Solyc05g055860.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:64477273-64480886 transcript_region:SL2.40ch05:64477273..64480886- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbC24350532g0001.1 protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|102; (*GB) gi|350535589|ref|NP_001234202.1| (e_value=1e-29) NRC1 [Solanum lycopersicum];; (*SWP) sp|Q6L3X3|R1B8_SOLDE (e_value=1e-12) Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1;; (*ITAG) Solyc04g007070.2.1 (e_value=8e-43) genomic_reference:SL2.40ch04 gene_region:791050-796086 transcript_region:SL2.40ch04:791050..796086+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00038059g0011.1 protein AED:0.06 eAED:0.06 QI:0|0.33|0.25|1|0|0.5|4|0|491; (*GB) gi|113205454|gb|AAW28574.2| (e_value=0.0) TPR domain containing protein, putative [Solanum demissum];; (*TAIR) AT1G26760.1 (e_value=9e-162) | Symbols: ATXR1, SDG35 | SET domain protein 35 | chr1:9248304-9249941 REVERSE LENGTH=545;; (*ITAG) Solyc05g007760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2222466-2224064 transcript_region:SL2.40ch05:2222466..2224064+ go_terms:GO:0005488 functional_description:"SET domain protein (AHRD V1 ***- B9HI95_POPTR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00038059g0007.1 protein AED:0.11 eAED:0.11 QI:287|0.92|0.92|1|0.92|0.92|14|672|871; (*GB) gi|49533765|gb|AAT66764.1| (e_value=0.0) Putative anaphase promoting complex protein, identical [Solanum demissum];; (*SWP) sp|Q8H1U5|APC2_ARATH (e_value=0.0) Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1;; (*TAIR) AT2G04660.1 (e_value=0.0) | Symbols: APC2 | anaphase-promoting complex/cyclosome 2 | chr2:1624933-1629039 FORWARD LENGTH=865;; (*ITAG) Solyc05g007750.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:2213544-2221713 transcript_region:SL2.40ch05:2213544..2221713+ go_terms:GO:0004842 functional_description:"Anaphase promoting complex subunit 2 (AHRD V1 *-*- Q3U430_MOUSE); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00038059g0012.1 protein AED:0.28 eAED:0.28 QI:0|0.5|0.33|1|0.5|0.33|3|0|253; (*GB) gi|118490007|gb|ABK96797.1| (e_value=9e-100) NAC domain protein NAC2 [Solanum tuberosum];; (*SWP) sp|O49255|NAC29_ARATH (e_value=2e-66) NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1;; (*TAIR) AT1G69490.1 (e_value=1e-67) | Symbols: NAP, ANAC029, ATNAP | NAC-like, activated by AP3/PI | chr1:26122233-26123222 FORWARD LENGTH=268;; (*ITAG) Solyc05g007770.2.1 (e_value=5e-95) genomic_reference:SL2.40ch05 gene_region:2229720-2231644 transcript_region:SL2.40ch05:2229720..2231644+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 **** Q5DM36_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00054920g0001.1 protein AED:0.05 eAED:0.05 QI:178|1|1|1|0.33|0.28|7|76|353; (*GB) gi|225452464|ref|XP_002274475.1| (e_value=0.0) PREDICTED: apoptosis-enhancing nuclease-like [Vitis vinifera];; (*SWP) sp|Q08237|REXO4_YEAST (e_value=1e-28) RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1;; (*TAIR) AT3G27970.1 (e_value=0.0) | Symbols: | Exonuclease family protein | chr3:10389609-10391544 FORWARD LENGTH=357;; (*ITAG) Solyc02g086850.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:44036807-44039072 transcript_region:SL2.40ch02:44036807..44039072+ go_terms:GO:0003676,GO:0005622 functional_description:"RNA exonuclease 4 (AHRD V1 ***- B6T4V3_MAIZE); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbC25811859g0003.1 protein AED:0.53 eAED:0.84 QI:0|0.33|0|0.75|1|0.75|4|0|176; (*GB) gi|61696673|gb|AAX53097.1| (e_value=5e-99) DNA mismatch repair protein [Solanum lycopersicum];; (*TAIR) AT3G24320.1 (e_value=8e-76) | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118;; (*ITAG) Solyc09g090870.2.1 (e_value=9e-102) genomic_reference:SL2.40ch09 gene_region:65605318-65639030 transcript_region:SL2.40ch09:65605318..65639030- go_terms:GO:0003684 functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-** C8PCK3_9LACO); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0003684 NbS00028622g0016.1 protein AED:0.00 eAED:0.00 QI:84|1|1|1|0.5|1|3|496|90; (*ITAG) Solyc11g006750.1.1 (e_value=2e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:1349139-1349703 transcript_region:SL2.40ch11:1349139..1349703- functional_description:"Unknown Protein (AHRD V1)"; NbS00028622g0001.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|144; (*GB) gi|350534914|ref|NP_001234678.1| (e_value=2e-91) 40S ribosomal protein S17 [Solanum lycopersicum];; (*SWP) sp|P49215|RS17_SOLLC (e_value=6e-93) 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3;; (*TAIR) AT5G04800.4 (e_value=6e-80) | Symbols: | Ribosomal S17 family protein | chr5:1389217-1389642 FORWARD LENGTH=141;; (*ITAG) Solyc11g006690.1.1 (e_value=6e-103) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1295503-1295937 transcript_region:SL2.40ch11:1295503..1295937- go_terms:GO:0005840 functional_description:"40S ribosomal protein S17-like protein (AHRD V1 ***- Q3HRX4_SOLTU); contains Interpro domain(s) IPR001210 Ribosomal protein S17e "; GO:0005840 NbS00028622g0004.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|459; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=0.0) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=2e-133) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G49690.1 (e_value=6e-72) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc01g095760.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:78718439-78719988 transcript_region:SL2.40ch01:78718439..78719988+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00028622g0012.1 protein AED:0.21 eAED:0.21 QI:743|1|1|1|1|1|2|35|46 NbS00028622g0014.1 protein AED:0.11 eAED:0.11 QI:123|1|1|1|1|1|2|281|174; (*GB) gi|6688529|emb|CAB65169.1| (e_value=2e-109) I-box binding factor [Solanum lycopersicum];; (*SWP) sp|Q2V9B0|MY1R1_SOLTU (e_value=1e-26) Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G04760.1 (e_value=7e-69) | Symbols: | Duplicated homeodomain-like superfamily protein | chr5:1373752-1374529 REVERSE LENGTH=215;; (*ITAG) Solyc05g055240.2.1 (e_value=4e-112) genomic_reference:SL2.40ch05 gene_region:64115249-64118720 transcript_region:SL2.40ch05:64115249..64118720+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** D7MR44_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00028622g0108.1 protein AED:0.05 eAED:0.05 QI:62|0.66|0.75|1|0.33|0.5|4|778|539 NbS00028622g0110.1 protein AED:0.56 eAED:0.59 QI:0|0|0|0.5|0|0.5|2|0|88 NbS00028622g0109.1 protein AED:0.42 eAED:0.63 QI:0|0|0|1|0.5|0.33|3|0|208 NbS00028622g0101.1 protein AED:0.10 eAED:0.10 QI:0|-1|0|1|-1|1|1|0|469 NbS00034955g0005.1 protein AED:0.22 eAED:0.22 QI:0|1|0.8|1|1|1|5|359|223; (*GB) gi|359488181|ref|XP_002280096.2| (e_value=6e-64) PREDICTED: uncharacterized protein LOC100249716 [Vitis vinifera];; (*SWP) sp|Q54I39|IST1L_DICDI (e_value=2e-16) IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1;; (*TAIR) AT1G13340.1 (e_value=3e-52) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:4569622-4571043 REVERSE LENGTH=409;; (*ITAG) Solyc02g085830.2.1 (e_value=3e-123) genomic_reference:SL2.40ch02 gene_region:43202680-43203800 transcript_region:SL2.40ch02:43202680..43203800- functional_description:"IST1 homolog (AHRD V1 **-- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00060107g0004.1 protein AED:0.21 eAED:0.21 QI:188|1|1|1|0.66|0.75|4|321|279; (*GB) gi|193784667|dbj|BAG50820.1| (e_value=0.0) MAP kinase [Nicotiana benthamiana];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=0.0) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=2e-178) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc12g019460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10385358-10395971 transcript_region:SL2.40ch12:10385358..10395971+ go_terms:GO:0006468 functional_description:"Mitogen-activated protein kinase 1 (AHRD V1 ***- Q84MI6_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0006468 NbS00059426g0001.1 protein AED:0.02 eAED:0.02 QI:0|-1|0|1|-1|1|1|0|526; (*GB) gi|225444916|ref|XP_002279603.1| (e_value=0.0) PREDICTED: probable polyamine oxidase 5-like [Vitis vinifera];; (*SWP) sp|Q9SU79|PAO5_ARATH (e_value=0.0) Probable polyamine oxidase 5 OS=Arabidopsis thaliana GN=PAO5 PE=2 SV=1;; (*TAIR) AT4G29720.1 (e_value=0.0) | Symbols: ATPAO5, PAO5 | polyamine oxidase 5 | chr4:14553456-14555057 REVERSE LENGTH=533;; (*ITAG) Solyc05g018880.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:24474233-24475771 transcript_region:SL2.40ch05:24474233..24475771- go_terms:GO:0046592 functional_description:"Polyamine oxidase (AHRD V1 **** A1CAV3_ASPCL); contains Interpro domain(s) IPR002937 Amine oxidase "; GO:0046592 NbS00033212g0005.1 protein AED:0.30 eAED:0.30 QI:0|0.87|0.55|1|0.75|0.77|9|17|287; (*GB) gi|356536011|ref|XP_003536534.1| (e_value=4e-96) PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor, chloroplastic-like [Glycine max];; (*SWP) sp|P37706|RRFC_DAUCA (e_value=3e-90) Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2;; (*TAIR) AT3G63190.1 (e_value=2e-84) | Symbols: RRF, HFP108, cpRRF, AtcpRRF | ribosome recycling factor, chloroplast precursor | chr3:23342861-23344640 REVERSE LENGTH=275;; (*ITAG) Solyc09g065270.2.1 (e_value=2e-122) genomic_reference:SL2.40ch09 gene_region:58937051-58943716 transcript_region:SL2.40ch09:58937051..58943716+ go_terms:GO:0008135,GO:0005507 functional_description:"Ribosome recycling factor (AHRD V1 **** B6TQ52_MAIZE); contains Interpro domain(s) IPR015998 Ribosome recycling factor, bacterial-like "; GO:0008135,GO:0005507 NbS00021734g0001.1 protein AED:0.55 eAED:0.55 QI:34|1|0|1|0|0|2|0|40 NbS00044521g0001.1 protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|727; (*GB) gi|326367387|gb|ADZ55305.1| (e_value=0.0) serine protease [Coffea arabica];; (*SWP) sp|O65351|SUBL_ARATH (e_value=6e-179) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=5e-180) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc02g072280.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36145951-36148143 transcript_region:SL2.40ch02:36145951..36148143- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9LWA3_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00044521g0002.1 protein AED:0.04 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|400; (*GB) gi|307136193|gb|ADN34032.1| (e_value=1e-136) leucine-rich repeat family protein [Cucumis melo subsp. melo];; (*SWP) sp|Q9SCT4|IMK2_ARATH (e_value=4e-17) Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1;; (*TAIR) AT4G18760.1 (e_value=8e-105) | Symbols: AtRLP51, RLP51 | receptor like protein 51 | chr4:10308163-10309458 REVERSE LENGTH=431;; (*ITAG) Solyc02g072250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36134785-36135969 transcript_region:SL2.40ch02:36134785..36135969+ go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00007066g0008.1 protein AED:0.06 eAED:0.06 QI:0|0.25|0.2|1|0.25|0|5|423|994; (*GB) gi|339790463|dbj|BAK52388.1| (e_value=0.0) leucine rich repeat receptor protein kinase CLAVATA1 [Solanum lycopersicum];; (*SWP) sp|O49545|BAME1_ARATH (e_value=0.0) Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT5G65700.2 (e_value=0.0) | Symbols: BAM1 | Leucine-rich receptor-like protein kinase family protein | chr5:26281826-26284945 FORWARD LENGTH=1003;; (*ITAG) Solyc02g091840.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47648877-47652967 transcript_region:SL2.40ch02:47648877..47652967+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00007066g0001.1 protein AED:0.24 eAED:0.38 QI:0|-1|0|1|-1|1|1|0|184; (*ITAG) Solyc01g086790.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:73498509-73498925 transcript_region:SL2.40ch01:73498509..73498925+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005890g0112.1 protein AED:0.14 eAED:0.20 QI:0|0.71|0.37|1|0.28|0.37|8|0|323 NbS00005890g0113.1 protein AED:0.22 eAED:0.52 QI:22|0|0.5|1|0|0|2|0|75 NbS00005890g0105.1 protein AED:0.19 eAED:0.21 QI:0|0|0|1|1|1|2|0|115 NbS00025837g0008.1 protein AED:0.12 eAED:0.12 QI:204|1|1|1|0.92|0.85|14|156|681; (*GB) gi|359494052|ref|XP_002277895.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100265786 [Vitis vinifera];; (*SWP) sp|Q6NUV0|RB3GP_DANRE (e_value=2e-37) Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio GN=rab3gap1 PE=2 SV=2;; (*TAIR) AT5G55060.1 (e_value=0.0) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | chr5:22342079-22346400 FORWARD LENGTH=662;; (*ITAG) Solyc07g064740.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:63987014-63995400 transcript_region:SL2.40ch07:63987014..63995400+ functional_description:"Rab3 GTPase-activating protein catalytic subunit (AHRD V1 ***- RB3GP_MOUSE)"; NbS00025837g0007.1 protein AED:0.30 eAED:0.30 QI:187|0.75|0.8|1|1|1|5|209|342; (*GB) gi|225460935|ref|XP_002277934.1| (e_value=4e-121) PREDICTED: GDSL esterase/lipase At5g55050 [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=2e-79) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=2e-80) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064720.2.1 (e_value=9e-155) genomic_reference:SL2.40ch07 gene_region:63973282-63978859 transcript_region:SL2.40ch07:63973282..63978859+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00025837g0009.1 protein AED:0.36 eAED:0.36 QI:0|0.6|0.33|1|0.2|0.16|6|0|360; (*GB) gi|225460935|ref|XP_002277934.1| (e_value=5e-103) PREDICTED: GDSL esterase/lipase At5g55050 [Vitis vinifera];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=9e-89) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=7e-90) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064730.1.1 (e_value=4e-153) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63980703-63984441 transcript_region:SL2.40ch07:63980703..63984441+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00004313g0001.1 protein AED:0.05 eAED:0.05 QI:0|-1|0|1|-1|1|1|0|482; (*GB) gi|350535437|ref|NP_001234706.1| (e_value=0.0) uncharacterized protein LOC100134881 [Solanum lycopersicum];; (*TAIR) AT3G23160.1 (e_value=3e-86) | Symbols: | Protein of unknown function (DUF668) | chr3:8260059-8261654 REVERSE LENGTH=531;; (*ITAG) Solyc10g084880.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:63580319-63582004 transcript_region:SL2.40ch10:63580319..63582004- functional_description:"Avr9/Cf-9 rapidly elicited protein 137 (AHRD V1 ***- Q9FQZ2_TOBAC); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00004025g0003.1 protein AED:0.07 eAED:0.07 QI:182|1|1|1|1|1|4|347|569; (*GB) gi|359493461|ref|XP_002265921.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100249450 [Vitis vinifera];; (*SWP) sp|Q0WP01|PTR9_ARATH (e_value=0.0) Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1;; (*TAIR) AT1G22540.1 (e_value=0.0) | Symbols: | Major facilitator superfamily protein | chr1:7964202-7966222 FORWARD LENGTH=557;; (*ITAG) Solyc06g065020.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:36931096-36935734 transcript_region:SL2.40ch06:36931096..36935734- go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* A6YJX5_9MAGN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00008570g0001.1 protein AED:0.06 eAED:0.11 QI:0|0.5|0|1|1|1|3|0|339; (*GB) gi|225459925|ref|XP_002264688.1| (e_value=7e-149) PREDICTED: protein BEARSKIN1 [Vitis vinifera];; (*SWP) sp|Q9SV87|BRN2_ARATH (e_value=1e-127) Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1;; (*TAIR) AT4G10350.1 (e_value=1e-128) | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing protein 70 | chr4:6415287-6416829 REVERSE LENGTH=341;; (*ITAG) Solyc06g063430.1.1 (e_value=1e-120) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36497407-36500202 transcript_region:SL2.40ch06:36497407..36500202- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1Q0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00016848g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|1|1|1|1|20|305|791; (*GB) gi|255581792|ref|XP_002531697.1| (e_value=0.0) heat shock protein, putative [Ricinus communis];; (*SWP) sp|P36183|ENPL_HORVU (e_value=0.0) Endoplasmin homolog OS=Hordeum vulgare PE=2 SV=1;; (*TAIR) AT3G07770.1 (e_value=0.0) | Symbols: Hsp89.1, AtHsp90.6, AtHsp90-6 | HEAT SHOCK PROTEIN 89.1 | chr3:2479611-2483970 FORWARD LENGTH=799;; (*ITAG) Solyc07g047790.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56327803-56334029 transcript_region:SL2.40ch07:56327803..56334029- go_terms:GO:0005524,GO:0006950 functional_description:"Chaperone protein htpG (AHRD V1 ***- HTPG_IDILO); contains Interpro domain(s) IPR001404 Heat shock protein Hsp90 "; GO:0005524,GO:0006950 NbS00016848g0013.1 protein AED:0.14 eAED:0.14 QI:0|0.92|0.8|1|0.92|0.86|15|684|1300; (*GB) gi|359485817|ref|XP_002269977.2| (e_value=0.0) PREDICTED: histidine kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9C5U2|AHK2_ARATH (e_value=0.0) Histidine kinase 2 OS=Arabidopsis thaliana GN=AHK2 PE=1 SV=1;; (*TAIR) AT5G35750.1 (e_value=0.0) | Symbols: AHK2, HK2 | histidine kinase 2 | chr5:13911743-13916337 REVERSE LENGTH=1176;; (*ITAG) Solyc07g047770.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56284194-56294427 transcript_region:SL2.40ch07:56284194..56294427- go_terms:GO:0042802,GO:0009884 functional_description:"Histidine kinase 1 (AHRD V1 ***- D9ZHC0_HYPPE); contains Interpro domain(s) IPR006189 CHASE "; GO:0042802,GO:0009884 NbS00016848g0015.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|0|1|2|0|537; (*GB) gi|45544877|gb|AAS67374.1| (e_value=0.0) CONSTANS interacting protein 6, partial [Solanum lycopersicum];; (*SWP) sp|Q84N38|PVIP_NICBE (e_value=0.0) OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1;; (*TAIR) AT5G48160.2 (e_value=0.0) | Symbols: OBE2 | Protein of unknown function (DUF1423) | chr5:19528019-19529820 REVERSE LENGTH=574;; (*ITAG) Solyc07g047780.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:56318843-56323880 transcript_region:SL2.40ch07:56318843..56323880- go_terms:GO:0008270 functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; GO:0008270 NbS00005042g0004.1 protein AED:0.11 eAED:0.11 QI:292|1|0.75|1|1|1|4|0|265; (*GB) gi|225457383|ref|XP_002284847.1| (e_value=3e-111) PREDICTED: thioredoxin-like 1-1, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9XFI1|TRL12_ARATH (e_value=3e-83) Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1;; (*TAIR) AT5G61440.1 (e_value=3e-84) | Symbols: ACHT5 | atypical CYS HIS rich thioredoxin 5 | chr5:24707658-24708684 FORWARD LENGTH=245;; (*ITAG) Solyc03g115870.2.1 (e_value=2e-144) genomic_reference:SL2.40ch03 gene_region:59525085-59526646 transcript_region:SL2.40ch03:59525085..59526646+ go_terms:GO:0016671 functional_description:"Thioredoxin 2 (AHRD V1 ***- Q5ZF47_PLAMJ); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0016671 NbS00020368g0016.1 protein AED:0.06 eAED:0.06 QI:0|0.5|0.66|1|1|1|3|329|223; (*GB) gi|147845949|emb|CAN82027.1| (e_value=6e-78) hypothetical protein VITISV_000612 [Vitis vinifera];; (*SWP) sp|P15490|VSPA_SOYBN (e_value=5e-50) Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1;; (*TAIR) AT4G25150.1 (e_value=4e-51) | Symbols: | HAD superfamily, subfamily IIIB acid phosphatase | chr4:12901736-12902882 REVERSE LENGTH=260;; (*ITAG) Solyc03g121100.2.1 (e_value=1e-119) genomic_reference:SL2.40ch03 gene_region:63376129-63377332 transcript_region:SL2.40ch03:63376129..63377332- go_terms:GO:0003993 functional_description:"Acid phosphatase (AHRD V1 **-- O49855_SOYBN); contains Interpro domain(s) IPR010028 Acid phosphatase, plant "; GO:0003993 NbS00020368g0017.1 protein AED:0.58 eAED:0.58 QI:0|0.33|0.5|0.75|0.33|0.5|4|125|78 NbS00020368g0014.1 protein AED:0.04 eAED:0.09 QI:0|1|0|1|1|1|2|0|650; (*GB) gi|147790299|emb|CAN69978.1| (e_value=5e-20) hypothetical protein VITISV_011280 [Vitis vinifera];; (*ITAG) Solyc03g121080.2.1 (e_value=5e-138) genomic_reference:SL2.40ch03 gene_region:63362764-63365375 transcript_region:SL2.40ch03:63362764..63365375+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020368g0019.1 protein AED:0.25 eAED:0.25 QI:17|0.76|0.77|0.94|0.70|0.66|18|592|795; (*GB) gi|356567439|ref|XP_003551927.1| (e_value=0.0) PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max];; (*SWP) sp|Q55C58|VPS16_DICDI (e_value=9e-96) Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2;; (*TAIR) AT2G38020.1 (e_value=0.0) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858;; (*ITAG) Solyc07g056220.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:61387158-61398184 transcript_region:SL2.40ch07:61387158..61398184- go_terms:GO:0051015 functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NFB5_AJECG); contains Interpro domain(s) IPR016534 Vacuolar protein sorting-associated protein 16 "; GO:0051015 NbS00007405g0003.1 protein AED:0.16 eAED:0.16 QI:0|1|0|1|1|1|2|0|141; (*GB) gi|255541019|ref|XP_002511574.1| (e_value=2e-31) glutathione s-transferase, putative [Ricinus communis];; (*SWP) sp|Q9FUT0|GSTU9_ARATH (e_value=1e-28) Glutathione S-transferase U9 OS=Arabidopsis thaliana GN=GSTU9 PE=2 SV=1;; (*TAIR) AT5G62480.1 (e_value=1e-29) | Symbols: ATGSTU9, GST14, GST14B, GSTU9 | glutathione S-transferase tau 9 | chr5:25088775-25089566 REVERSE LENGTH=240;; (*ITAG) Solyc03g116120.1.1 (e_value=7e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59682321-59683060 transcript_region:SL2.40ch03:59682321..59683060- go_terms:GO:0004364 functional_description:"Glutathione S-transferase 12 (AHRD V1 **** Q4LAW7_CAPCH); contains Interpro domain(s) IPR004045 Glutathione S-transferase, N-terminal "; GO:0004364 NbS00007405g0012.1 protein AED:0.03 eAED:0.03 QI:74|0.85|0.62|1|0.71|0.5|8|145|636; (*GB) gi|225456747|ref|XP_002275852.1| (e_value=0.0) PREDICTED: probable methyltransferase PMT2-like [Vitis vinifera];; (*SWP) sp|B9DFI7|PMT2_ARATH (e_value=0.0) Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2;; (*TAIR) AT1G26850.2 (e_value=0.0) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:9301146-9303432 REVERSE LENGTH=616;; (*ITAG) Solyc06g069870.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39892312-39896352 transcript_region:SL2.40ch06:39892312..39896352+ functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7KPN7_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00007405g0001.1 protein AED:0.04 eAED:0.04 QI:0|-1|0|1|-1|1|1|0|464; (*GB) gi|297733990|emb|CBI15237.3| (e_value=4e-82) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GXS8|PKS3_ARATH (e_value=8e-30) Protein PHYTOCHROME KINASE SUBSTRATE 3 OS=Arabidopsis thaliana GN=PKS3 PE=2 SV=2;; (*TAIR) AT1G18810.1 (e_value=6e-31) | Symbols: | phytochrome kinase substrate-related | chr1:6485709-6486872 REVERSE LENGTH=387;; (*ITAG) Solyc06g069880.1.1 (e_value=0.0) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:39897823-39899235 transcript_region:SL2.40ch06:39897823..39899235+ functional_description:"Phytochrome kinase substrate 1 (AHRD V1 ***- D7LQB9_ARALY)"; NbS00007405g0005.1 protein AED:0.51 eAED:0.56 QI:148|0.33|0.5|0.75|1|1|4|0|106; (*GB) gi|730558|sp|P41098.1|RL34_TOBAC (e_value=1e-37) RecName: Full=60S ribosomal protein L34;; (*SWP) sp|P41098|RL34_TOBAC (e_value=3e-39) 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1;; (*TAIR) AT1G69620.1 (e_value=8e-39) | Symbols: RPL34 | ribosomal protein L34 | chr1:26189900-26191081 FORWARD LENGTH=119;; (*ITAG) Solyc05g007560.2.1 (e_value=8e-40) genomic_reference:SL2.40ch05 gene_region:2100690-2103376 transcript_region:SL2.40ch05:2100690..2103376- go_terms:GO:0003735,GO:0005515 functional_description:"60S ribosomal protein L34 (AHRD V1 ***- B6UH15_MAIZE); contains Interpro domain(s) IPR008195 Ribosomal protein L34e "; GO:0003735,GO:0005515 NbS00007405g0014.1 protein AED:0.56 eAED:0.72 QI:0|0|0|0.5|0|0|2|0|60 NbS00004242g0004.1 protein AED:0.02 eAED:0.03 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|359492482|ref|XP_002283891.2| (e_value=2e-131) PREDICTED: uncharacterized protein LOC100247170 [Vitis vinifera];; (*TAIR) AT1G58120.1 (e_value=7e-103) | Symbols: | BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420;; (*ITAG) Solyc04g076150.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58692985-58694636 transcript_region:SL2.40ch04:58692985..58694636+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004242g0013.1 protein AED:0.05 eAED:0.05 QI:0|0.78|0.8|0.95|0.94|0.85|20|338|874; (*GB) gi|357465311|ref|XP_003602937.1| (e_value=0.0) Rho GTPase-activating protein [Medicago truncatula];; (*SWP) sp|Q8IWW6|RHG12_HUMAN (e_value=2e-12) Rho GTPase-activating protein 12 OS=Homo sapiens GN=ARHGAP12 PE=1 SV=1;; (*TAIR) AT4G24580.1 (e_value=7e-173) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00004242g0017.1 protein AED:0.19 eAED:0.19 QI:0|0.88|0.7|1|1|0.9|10|0|1135; (*GB) gi|225433862|ref|XP_002264772.1| (e_value=0.0) PREDICTED: ATPase family AAA domain-containing protein 2B-like [Vitis vinifera];; (*SWP) sp|F4IAE9|Y1591_ARATH (e_value=0.0) ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1;; (*TAIR) AT1G05910.1 (e_value=0.0) | Symbols: | cell division cycle protein 48-related / CDC48-related | chr1:1790796-1796503 FORWARD LENGTH=1210;; (*ITAG) Solyc04g076180.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:58710783-58718831 transcript_region:SL2.40ch04:58710783..58718831+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00004242g0002.1 protein AED:0.03 eAED:0.14 QI:0|0|0|1|1|1|2|0|540; (*GB) gi|359492937|ref|XP_002283889.2| (e_value=0.0) PREDICTED: aspartic proteinase nepenthesin-1-like [Vitis vinifera];; (*SWP) sp|Q9LS40|ASPG1_ARATH (e_value=7e-43) Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1;; (*TAIR) AT1G09750.1 (e_value=9e-165) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:3157541-3158960 FORWARD LENGTH=449;; (*ITAG) Solyc04g076190.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:58719018-58720325 transcript_region:SL2.40ch04:58719018..58720325- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin-1 (AHRD V1 **-- B6TDX6_MAIZE); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00004242g0112.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|0|0|2|0|413 NbS00004242g0113.1 protein AED:0.32 eAED:0.36 QI:0|0|0|0.75|0.33|0.5|4|0|252 NbS00004242g0114.1 protein AED:0.42 eAED:0.42 QI:0|0|0|0.5|1|0.5|2|0|119 NbS00004242g0111.1 protein AED:0.45 eAED:0.48 QI:0|0.66|0.5|1|0.66|0.75|4|0|151 NbS00041315g0003.1 protein AED:0.24 eAED:0.24 QI:229|1|1|1|0.83|0.85|7|278|260; (*GB) gi|255562096|ref|XP_002522056.1| (e_value=8e-131) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9M2Y6|Y3972_ARATH (e_value=5e-123) Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1;; (*TAIR) AT5G65810.1 (e_value=4e-129) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26337833-26339144 REVERSE LENGTH=258;; (*ITAG) Solyc01g106580.2.1 (e_value=9e-164) genomic_reference:SL2.40ch01 gene_region:86167327-86172323 transcript_region:SL2.40ch01:86167327..86172323+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012637g0001.1 protein AED:0.06 eAED:0.06 QI:0|-1|0|1|-1|1|1|0|430; (*GB) gi|225433744|ref|XP_002267358.1| (e_value=2e-12) PREDICTED: F-box protein CPR30 [Vitis vinifera];; (*ITAG) Solyc11g007360.1.1 (e_value=2e-40) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:1725490-1726254 transcript_region:SL2.40ch11:1725490..1726254+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00012637g0002.1 protein AED:0.15 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|334; (*GB) gi|359487055|ref|XP_002271587.2| (e_value=5e-104) PREDICTED: flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q5NTH0|UGAT_BELPE (e_value=3e-81) Cyanidin-3-O-glucoside 2-O-glucuronosyltransferase OS=Bellis perennis GN=UGAT PE=1 SV=1;; (*TAIR) AT5G66690.1 (e_value=6e-43) | Symbols: UGT72E2 | UDP-Glycosyltransferase superfamily protein | chr5:26625155-26626600 FORWARD LENGTH=481;; (*ITAG) Solyc11g007350.1.1 (e_value=8e-163) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1721009-1722400 transcript_region:SL2.40ch11:1721009..1722400- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00012637g0006.1 protein AED:0.31 eAED:0.31 QI:0|1|0.5|1|1|1|2|0|422; (*GB) gi|225430206|ref|XP_002282448.1| (e_value=1e-92) PREDICTED: uncharacterized protein LOC100264564 [Vitis vinifera];; (*TAIR) AT4G32440.1 (e_value=5e-59) | Symbols: | Plant Tudor-like RNA-binding protein | chr4:15657295-15658692 FORWARD LENGTH=377;; (*ITAG) Solyc11g007340.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1716337-1718630 transcript_region:SL2.40ch11:1716337..1718630+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 ***- D7MA47_ARALY); contains Interpro domain(s) IPR005491 ENT "; GO:0003723 NbS00015528g0002.1 protein AED:0.20 eAED:0.20 QI:0|0.75|0.4|1|1|1|5|0|300; (*GB) gi|225452132|ref|XP_002262897.1| (e_value=9e-58) PREDICTED: uncharacterized protein At3g27210-like [Vitis vinifera];; (*SWP) sp|Q9LK32|Y3721_ARATH (e_value=4e-12) Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1;; (*TAIR) AT3G01860.1 (e_value=1e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:302869-304329 FORWARD LENGTH=223;; (*ITAG) Solyc02g094030.2.1 (e_value=3e-119) genomic_reference:SL2.40ch02 gene_region:49260246-49263216 transcript_region:SL2.40ch02:49260246..49263216+ functional_description:"Unknown Protein (AHRD V1)"; NbS00058674g0007.1 protein AED:0.19 eAED:0.19 QI:164|0.5|0.33|0.66|0|0.33|3|0|255; (*GB) gi|224105011|ref|XP_002313654.1| (e_value=1e-54) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g066940.1.1 (e_value=7e-47) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:49818596-49819348 transcript_region:SL2.40ch11:49818596..49819348- functional_description:"Unknown Protein (AHRD V1)"; NbS00058674g0006.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|1|1|2|0|104; (*GB) gi|225436329|ref|XP_002268144.1| (e_value=5e-44) PREDICTED: uncharacterized protein At5g22580 [Vitis vinifera];; (*SWP) sp|Q9FK81|Y5258_ARATH (e_value=1e-41) Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1;; (*TAIR) AT5G22580.1 (e_value=8e-43) | Symbols: | Stress responsive A/B Barrel Domain | chr5:7502709-7503137 FORWARD LENGTH=111;; (*ITAG) Solyc11g066950.1.1 (e_value=3e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49822708-49823877 transcript_region:SL2.40ch11:49822708..49823877- functional_description:"Stress responsive A/B barrel domain family protein (AHRD V1 ***- D7HD13_VIBCH); contains Interpro domain(s) IPR013097 Stress responsive alpha-beta barrel "; NbS00024768g0013.1 protein AED:0.17 eAED:0.19 QI:3|0.33|0|1|0.66|0.75|4|0|443; (*GB) gi|3869088|dbj|BAA34348.1| (e_value=0.0) elongation factor-1 alpha [Nicotiana paniculata];; (*SWP) sp|P17786|EF1A_SOLLC (e_value=0.0) Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc11g069700.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51391850-51393513 transcript_region:SL2.40ch11:51391850..51393513+ go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- P93769_TOBAC); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00024768g0017.1 protein AED:0.14 eAED:0.15 QI:0|0|0.33|1|0|0|6|0|911; (*GB) gi|297849086|ref|XP_002892424.1| (e_value=0.0) T6D22.2 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P17786|EF1A_SOLLC (e_value=0.0) Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G60390.3 (e_value=0.0) | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449;; (*ITAG) Solyc06g009970.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:4379727-4382219 transcript_region:SL2.40ch06:4379727..4382219+ go_terms:GO:0051015 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- Q8H9C0_SOLTU); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal IPR000795 Protein synthesis factor, GTP-binding "; GO:0051015 NbS00024768g0019.1 protein AED:0.34 eAED:0.34 QI:148|0.83|0.85|1|0.5|0.42|7|101|157; (*GB) gi|225435249|ref|XP_002284989.1| (e_value=2e-85) PREDICTED: proteasome subunit beta type-4 isoform 1 [Vitis vinifera];; (*SWP) sp|Q7DLR9|PSB4_ARATH (e_value=4e-81) Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2;; (*TAIR) AT1G56450.1 (e_value=3e-82) | Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246;; (*ITAG) Solyc11g069150.1.1 (e_value=3e-98) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50834495-50838333 transcript_region:SL2.40ch11:50834495..50838333- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9IKM7_POPTR); contains Interpro domain(s) IPR016295 Proteasome endopeptidase complex, beta subunit "; GO:0005839 NbS00024768g0001.1 protein AED:0.41 eAED:0.52 QI:116|0|0.25|1|1|1|4|33|85; (*GB) gi|321149999|gb|ADW66147.1| (e_value=2e-15) proteasome subunit beta type-4 [Solanum nigrum];; (*SWP) sp|Q7DLR9|PSB4_ARATH (e_value=2e-14) Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2;; (*TAIR) AT1G56450.1 (e_value=1e-15) | Symbols: PBG1 | 20S proteasome beta subunit G1 | chr1:21141970-21144186 FORWARD LENGTH=246;; (*ITAG) Solyc11g069150.1.1 (e_value=3e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50834495-50838333 transcript_region:SL2.40ch11:50834495..50838333- go_terms:GO:0005839 functional_description:"Proteasome subunit beta type (AHRD V1 ***- B9IKM7_POPTR); contains Interpro domain(s) IPR016295 Proteasome endopeptidase complex, beta subunit "; GO:0005839 NbS00024101g0019.1 protein AED:0.26 eAED:0.26 QI:183|0.33|0.25|1|0.33|0.25|4|0|211; (*GB) gi|363807078|ref|NP_001242587.1| (e_value=1e-39) uncharacterized protein LOC100777135 [Glycine max];; (*TAIR) AT5G19430.1 (e_value=6e-28) | Symbols: | RING/U-box superfamily protein | chr5:6553998-6555616 FORWARD LENGTH=255;; (*ITAG) Solyc11g064830.1.1 (e_value=1e-61) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:47135688-47142111 transcript_region:SL2.40ch11:47135688..47142111+ go_terms:GO:0008270 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LZ79_ARALY); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024101g0015.1 protein AED:0.28 eAED:0.28 QI:0|1|0.83|1|1|1|6|0|378; (*GB) gi|224120582|ref|XP_002330978.1| (e_value=2e-175) predicted protein [Populus trichocarpa];; (*TAIR) AT4G15010.2 (e_value=9e-166) | Symbols: | Mitochondrial substrate carrier family protein | chr4:8573125-8574864 REVERSE LENGTH=378;; (*ITAG) Solyc11g007070.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1541091-1544515 transcript_region:SL2.40ch11:1541091..1544515+ go_terms:GO:0016020 functional_description:"Mitochondrial substrate carrier family protein (AHRD V1 ***- D7MB92_ARALY); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0016020 NbS00024101g0018.1 protein AED:0.07 eAED:0.07 QI:0|0.9|0.81|1|0.7|0.81|11|0|564; (*GB) gi|224105983|ref|XP_002314002.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19390.2 (e_value=8e-154) | Symbols: | Rho GTPase activation protein (RhoGAP) with PH domain | chr5:6531906-6538206 FORWARD LENGTH=870;; (*ITAG) Solyc01g008770.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2797441-2815705 transcript_region:SL2.40ch01:2797441..2815705+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *--* Q6P4P5_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00024101g0022.1 protein AED:0.09 eAED:0.09 QI:0|0.5|0.4|1|0.75|0.8|5|0|530; (*GB) gi|224105977|ref|XP_002314000.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|P95245|PHLC_MYCTU (e_value=2e-24) Phospholipase C 3 OS=Mycobacterium tuberculosis GN=plcC PE=3 SV=2;; (*TAIR) AT2G26870.1 (e_value=0.0) | Symbols: NPC2 | non-specific phospholipase C2 | chr2:11457117-11459355 REVERSE LENGTH=514;; (*ITAG) Solyc01g008790.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2826378-2831040 transcript_region:SL2.40ch01:2826378..2831040+ go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7LEV5_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00024101g0016.1 protein AED:0.24 eAED:0.24 QI:220|0.90|0.91|1|0.81|0.75|12|170|349; (*GB) gi|224105961|ref|XP_002313995.1| (e_value=2e-180) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9D8V0|HM13_MOUSE (e_value=1e-67) Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1;; (*TAIR) AT2G03120.1 (e_value=4e-174) | Symbols: ATSPP, SPP | signal peptide peptidase | chr2:937554-940083 FORWARD LENGTH=344;; (*ITAG) Solyc01g008820.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:2843927-2849931 transcript_region:SL2.40ch01:2843927..2849931+ go_terms:GO:0005515,GO:0042500 functional_description:"Signal peptide peptidase family protein (AHRD V1 ***- D7LQE4_ARALY); contains Interpro domain(s) IPR007369 Peptidase A22B, signal peptide peptidase "; GO:0005515,GO:0042500 NbS00005477g0006.1 protein AED:0.01 eAED:0.04 QI:0|1|0.5|1|1|1|2|0|292; (*GB) gi|297740406|emb|CBI30588.3| (e_value=9e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G44310.2 (e_value=2e-12) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr5:17847998-17849436 REVERSE LENGTH=331;; (*ITAG) Solyc02g077970.2.1 (e_value=6e-122) genomic_reference:SL2.40ch02 gene_region:37370107-37371541 transcript_region:SL2.40ch02:37370107..37371541- functional_description:"Late embryo abundance protein (Fragment) (AHRD V1 *-*- C6F8V9_PSEMZ)"; NbS00005477g0104.1 protein AED:0.12 eAED:0.12 QI:0|-1|0|1|-1|1|1|0|284 NbS00005477g0102.1 protein AED:0.41 eAED:0.41 QI:0|-1|0|1|-1|1|1|0|122 NbS00037805g0003.1 protein AED:0.32 eAED:0.32 QI:239|0.25|0.4|0.8|0.75|0.6|5|0|90 NbS00012920g0007.1 protein AED:0.42 eAED:0.43 QI:0|0.92|0.86|1|1|1|15|506|585; (*GB) gi|359495042|ref|XP_002265500.2| (e_value=0.0) PREDICTED: putative amidohydrolase ytcJ-like [Vitis vinifera];; (*SWP) sp|O34355|YTCJ_BACSU (e_value=3e-58) Putative amidohydrolase ytcJ OS=Bacillus subtilis (strain 168) GN=ytcJ PE=4 SV=1;; (*TAIR) AT3G55850.1 (e_value=0.0) | Symbols: LAF3, LAF3 ISF2 | Amidohydrolase family | chr3:20721866-20725489 REVERSE LENGTH=576;; (*ITAG) Solyc08g014470.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:4435813-4441978 transcript_region:SL2.40ch08:4435813..4441978- go_terms:GO:0016787 functional_description:"Amidohydrolase family protein (AHRD V1 ***- C1F7G0_ACIC5); contains Interpro domain(s) IPR013108 Amidohydrolase 3 "; GO:0016787 NbS00041681g0005.1 protein AED:0.35 eAED:0.35 QI:132|0.64|0.6|1|0.64|0.73|15|0|690; (*GB) gi|297738991|emb|CBI28236.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TC07|TBC15_HUMAN (e_value=2e-63) TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2;; (*TAIR) AT5G52580.2 (e_value=0.0) | Symbols: | RabGAP/TBC domain-containing protein | chr5:21338052-21342848 FORWARD LENGTH=690;; (*ITAG) Solyc07g008000.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:2697439-2709902 transcript_region:SL2.40ch07:2697439..2709902+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 15 (AHRD V1 *--- Q6P4X9_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00041681g0006.1 protein AED:0.08 eAED:0.08 QI:0|1|0.66|1|1|1|3|0|215; (*GB) gi|9954118|gb|AAG08962.1|AF122054_1 (e_value=3e-138) tuber-specific and sucrose-responsive element binding factor [Solanum tuberosum];; (*SWP) sp|Q9LTF7|MYB82_ARATH (e_value=5e-60) Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1;; (*TAIR) AT5G52600.1 (e_value=3e-61) | Symbols: AtMYB82, MYB82 | myb domain protein 82 | chr5:21343197-21343968 REVERSE LENGTH=201;; (*ITAG) Solyc07g008010.2.1 (e_value=2e-132) genomic_reference:SL2.40ch07 gene_region:2710099-2711454 transcript_region:SL2.40ch07:2710099..2711454- go_terms:GO:0003700 functional_description:"Myb transcription factor (AHRD V1 *--* Q6Q789_VITVI); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00019642g0012.1 protein AED:0.07 eAED:0.07 QI:0|0.66|0|1|0|0|4|0|252; (*GB) gi|225456024|ref|XP_002279751.1| (e_value=2e-51) PREDICTED: uncharacterized protein LOC100245764 [Vitis vinifera];; (*TAIR) AT1G73760.1 (e_value=4e-41) | Symbols: | RING/U-box superfamily protein | chr1:27739366-27741161 REVERSE LENGTH=367;; (*ITAG) Solyc03g118840.2.1 (e_value=1e-91) genomic_reference:SL2.40ch03 gene_region:61692728-61696244 transcript_region:SL2.40ch03:61692728..61696244+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00019642g0011.1 protein AED:0.11 eAED:0.11 QI:0|1|0.75|1|1|0.75|4|214|408; (*GB) gi|297734253|emb|CBI15500.3| (e_value=1e-163) unnamed protein product [Vitis vinifera];; (*SWP) sp|B3QWT7|MURG_CHLT3 (e_value=2e-69) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=murG PE=3 SV=1;; (*TAIR) AT1G73740.1 (e_value=3e-131) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr1:27734451-27736008 FORWARD LENGTH=431;; (*ITAG) Solyc03g118860.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61702376-61705855 transcript_region:SL2.40ch03:61702376..61705855- go_terms:GO:0016758 functional_description:"UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (AHRD V1 **** D5BLI8_ZUNPS); contains Interpro domain(s) IPR006009 N-acetylglucosaminyltransferase, MurG "; GO:0016758 NbS00019642g0007.1 protein AED:0.26 eAED:0.26 QI:136|0.87|0.77|1|0.75|0.77|9|1236|462; (*GB) gi|255567812|ref|XP_002524884.1| (e_value=1e-176) catalytic, putative [Ricinus communis];; (*TAIR) AT1G73750.1 (e_value=3e-150) | Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:27736659-27738887 FORWARD LENGTH=452;; (*ITAG) Solyc03g118850.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61697036-61702026 transcript_region:SL2.40ch03:61697036..61702026- go_terms:GO:0006508 functional_description:"Hydrolase alpha/beta fold family (AHRD V1 *--- Q1DF33_MYXXD)"; GO:0006508 NbS00030586g0010.1 protein AED:0.01 eAED:0.01 QI:0|1|0.5|1|1|0.75|4|0|1201; (*GB) gi|147776333|emb|CAN72034.1| (e_value=0.0) hypothetical protein VITISV_000078 [Vitis vinifera];; (*SWP) sp|C0LGQ5|GSO1_ARATH (e_value=0.0) LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1;; (*TAIR) AT4G20140.1 (e_value=0.0) | Symbols: GSO1 | Leucine-rich repeat transmembrane protein kinase | chr4:10884220-10888045 FORWARD LENGTH=1249;; (*ITAG) Solyc03g006030.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:712130-717082 transcript_region:SL2.40ch03:712130..717082- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00030586g0016.1 protein AED:0.45 eAED:0.45 QI:0|0|0|0.5|1|1|2|0|129; (*GB) gi|57013966|ref|YP_173438.1| (e_value=2e-43) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00030586g0011.1 protein AED:0.21 eAED:0.34 QI:0|0|0|0.57|0.33|0.42|7|0|317; (*GB) gi|57013970|ref|YP_173442.1| (e_value=2e-57) hypothetical protein NitaMp104 [Nicotiana tabacum];; (*ITAG) Solyc05g045740.1.1 (e_value=3e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:56718883-56719239 transcript_region:SL2.40ch05:56718883..56719239+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030586g0014.1 protein AED:0.29 eAED:0.42 QI:0|0|0|1|0|0|3|0|225; (*GB) gi|57014001|ref|YP_173472.1| (e_value=1e-88) ribosomal protein S4 [Nicotiana tabacum];; (*SWP) sp|Q31708|RT04_ARATH (e_value=4e-65) Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2;; (*ITAG) ATMG00290.1 (e_value=3e-68) | Symbols: RPS4 | mitochondrial ribosomal protein S4 | chrM:82028-83116 REVERSE LENGTH=362;; (*ITAG) Solyc00g021640.2.1 (e_value=1e-105) genomic_reference:SL2.40ch00 gene_region:11969993-11972180 transcript_region:SL2.40ch00:11969993..11972180- go_terms:GO:0003723 functional_description:"Ribosomal protein S4 (AHRD V1 ***- D5I3A5_CITLA); contains Interpro domain(s) IPR002942 RNA-binding S4 "; GO:0003723 NbS00030586g0013.1 protein AED:0.39 eAED:0.39 QI:0|0|0|1|0|0|2|0|124; (*GB) gi|57014002|ref|YP_173473.1| (e_value=4e-76) hypothetical protein NitaMp136 [Nicotiana tabacum]; NbS00030586g0012.1 protein AED:0.47 eAED:0.88 QI:0|0|0|1|0|0|2|0|78 NbS00049257g0004.1 protein AED:0.05 eAED:0.05 QI:373|1|1|1|1|1|3|38|153; (*GB) gi|225431869|ref|XP_002275498.1| (e_value=3e-38) PREDICTED: GATA transcription factor 16 [Vitis vinifera];; (*SWP) sp|Q8LG10|GAT15_ARATH (e_value=9e-32) GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2;; (*TAIR) AT3G06740.1 (e_value=7e-33) | Symbols: GATA15 | GATA transcription factor 15 | chr3:2126658-2127265 FORWARD LENGTH=149;; (*ITAG) Solyc05g054400.2.1 (e_value=2e-55) genomic_reference:SL2.40ch05 gene_region:63466881-63469046 transcript_region:SL2.40ch05:63466881..63469046- go_terms:GO:0006355 functional_description:"GATA transcription factor 22 (AHRD V1 *-*- B6U513_MAIZE); contains Interpro domain(s) IPR000679 Zinc finger, GATA-type "; GO:0006355 NbS00053927g0005.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|48|460; (*GB) gi|225430794|ref|XP_002270711.1| (e_value=3e-83) PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein-like [Vitis vinifera];; (*SWP) sp|Q9SCQ7|AN32_ARATH (e_value=8e-76) Acidic leucine-rich nuclear phosphoprotein 32-related protein OS=Arabidopsis thaliana GN=At3g50690 PE=2 SV=1;; (*TAIR) AT3G50690.1 (e_value=6e-77) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:18835271-18837097 REVERSE LENGTH=447;; (*ITAG) Solyc03g034080.2.1 (e_value=5e-101) genomic_reference:SL2.40ch03 gene_region:10050837-10054509 transcript_region:SL2.40ch03:10050837..10054509- go_terms:GO:0005515 functional_description:"Acidic leucine-rich nuclear phosphoprotein 32 family member A (AHRD V1 *-*- B6UH95_MAIZE); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00053927g0001.1 protein AED:0.33 eAED:0.33 QI:0|-1|0|1|-1|1|1|0|125; (*GB) gi|297819754|ref|XP_002877760.1| (e_value=2e-45) hypothetical protein ARALYDRAFT_906395 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G50685.1 (e_value=5e-46) | Symbols: | unknown protein; Has 52 Blast hits to 46 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:18834272-18834748 REVERSE LENGTH=158;; (*ITAG) Solyc03g034070.1.1 (e_value=8e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:10049783-10050151 transcript_region:SL2.40ch03:10049783..10050151- functional_description:"P-166-4_1 (Fragment) (AHRD V1 *-*- Q4VDD8_PINRE)"; NbS00003635g0006.1 protein AED:0.04 eAED:0.04 QI:348|1|1|1|1|1|4|109|578; (*GB) gi|356539537|ref|XP_003538254.1| (e_value=0.0) PREDICTED: peptide transporter PTR1-like [Glycine max];; (*SWP) sp|Q9M390|PTR1_ARATH (e_value=0.0) Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1;; (*TAIR) AT3G54140.1 (e_value=0.0) | Symbols: ATPTR1, PTR1 | peptide transporter 1 | chr3:20045885-20048154 REVERSE LENGTH=570;; (*ITAG) Solyc07g008520.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:3444192-3447207 transcript_region:SL2.40ch07:3444192..3447207+ go_terms:GO:0042936 functional_description:"Peptide transporter (AHRD V1 **-* O48542_HORVU); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00003635g0007.1 protein AED:0.16 eAED:0.26 QI:0|0|0|1|0|0|8|0|491; (*GB) gi|359492347|ref|XP_003634400.1| (e_value=2e-106) PREDICTED: wall-associated receptor kinase 2-like [Vitis vinifera];; (*SWP) sp|Q9S9M5|WAKLA_ARATH (e_value=1e-69) Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1;; (*TAIR) AT1G16120.1 (e_value=9e-71) | Symbols: WAKL1 | wall associated kinase-like 1 | chr1:5522639-5524983 FORWARD LENGTH=730;; (*ITAG) Solyc09g014710.2.1 (e_value=2e-130) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00003635g0008.1 protein AED:0.55 eAED:0.61 QI:0|0|0|1|0|0|2|0|73; (*ITAG) Solyc09g014720.1.1 (e_value=4e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:6773605-6777110 transcript_region:SL2.40ch09:6773605..6777110- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00050861g0003.1 protein AED:0.03 eAED:0.03 QI:0|1|0.5|1|1|1|2|0|188; (*GB) gi|255538596|ref|XP_002510363.1| (e_value=7e-96) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q1H5C9|OP24A_ARATH (e_value=9e-87) Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana GN=OEP24A PE=1 SV=1;; (*TAIR) AT1G45170.1 (e_value=7e-88) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17096233-17097910 REVERSE LENGTH=213;; (*ITAG) Solyc04g080190.2.1 (e_value=3e-115) genomic_reference:SL2.40ch04 gene_region:62042172-62045855 transcript_region:SL2.40ch04:62042172..62045855- functional_description:"Pore protein of (OEP24) (AHRD V1 **-- O49929_PEA)"; NbS00051152g0001.1 protein AED:0.23 eAED:0.24 QI:481|0.8|0.83|1|1|1|6|10|221; (*GB) gi|225465498|ref|XP_002271807.1| (e_value=5e-114) PREDICTED: stromal cell-derived factor 2-like protein [Vitis vinifera];; (*SWP) sp|Q93ZE8|SDF2_ARATH (e_value=1e-113) Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=At2g25110 PE=1 SV=1;; (*TAIR) AT2G25110.1 (e_value=8e-115) | Symbols: SDF2, ATSDL, AtSDF2 | stromal cell-derived factor 2-like protein precursor | chr2:10684428-10685838 FORWARD LENGTH=218;; (*ITAG) Solyc03g117020.2.1 (e_value=1e-132) genomic_reference:SL2.40ch03 gene_region:60340731-60345557 transcript_region:SL2.40ch03:60340731..60345557+ go_terms:GO:0016020 functional_description:"Stromal cell-derived factor 2 (AHRD V1 *--- B6TVP8_MAIZE); contains Interpro domain(s) IPR003608 MIR "; GO:0016020 NbS00019113g0002.1 protein AED:0.11 eAED:0.12 QI:0|0|0|0.5|1|1|2|0|196 NbS00012867g0002.1 protein AED:0.26 eAED:0.26 QI:0|0.75|0.8|1|1|1|5|0|347; (*GB) gi|317106672|dbj|BAJ53175.1| (e_value=0.0) JHL18I08.9 [Jatropha curcas];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=3e-135) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT1G75500.2 (e_value=1e-167) | Symbols: WAT1 | Walls Are Thin 1 | chr1:28338282-28340091 REVERSE LENGTH=389;; (*ITAG) Solyc04g080940.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:62579308-62582332 transcript_region:SL2.40ch04:62579308..62582332- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q94AP3_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00055550g0006.1 protein AED:0.32 eAED:0.34 QI:1070|0.76|0.78|1|0.69|0.78|14|0|488; (*GB) gi|225441189|ref|XP_002269812.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100250368 [Vitis vinifera];; (*SWP) sp|Q8R123|FAD1_MOUSE (e_value=9e-28) FAD synthase OS=Mus musculus GN=Flad1 PE=1 SV=1;; (*TAIR) AT5G03430.1 (e_value=0.0) | Symbols: | phosphoadenosine phosphosulfate (PAPS) reductase family protein | chr5:849237-852867 REVERSE LENGTH=497;; (*ITAG) Solyc09g008310.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1757098-1772595 transcript_region:SL2.40ch09:1757098..1772595- go_terms:GO:0008152,GO:0006777 functional_description:"CinA-like protein (AHRD V1 *--- CINAL_BACFN); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase "; GO:0008152,GO:0006777 NbS00055550g0007.1 protein AED:0.10 eAED:0.11 QI:0|0|0|1|0|0|2|0|600; (*GB) gi|225434622|ref|XP_002279360.1| (e_value=4e-138) PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera];; (*SWP) sp|O82380|PP175_ARATH (e_value=1e-120) Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1;; (*TAIR) AT2G29760.1 (e_value=1e-121) | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:12712884-12715100 FORWARD LENGTH=738;; (*ITAG) Solyc09g008300.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:1755154-1757190 transcript_region:SL2.40ch09:1755154..1757190+ go_terms:GO:0005030 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LE02_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030 NbS00001327g0010.1 protein AED:0.09 eAED:0.13 QI:0|0|0|1|0.2|0.18|11|0|1322; (*GB) gi|53854448|gb|AAU95624.1| (e_value=6e-87) R1 [Solanum tuberosum];; (*SWP) sp|Q6L3Z4|R1B12_SOLDE (e_value=7e-84) Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2;; (*TAIR) AT3G46530.1 (e_value=1e-41) | Symbols: RPP13 | NB-ARC domain-containing disease resistance protein | chr3:17130739-17133246 REVERSE LENGTH=835;; (*ITAG) Solyc05g012740.1.1 (e_value=1e-82) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5910570-5914278 transcript_region:SL2.40ch05:5910570..5914278- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00001327g0003.1 protein AED:0.08 eAED:0.08 QI:0|0|0|1|1|1|2|0|170; (*GB) gi|48209896|gb|AAT40490.1| (e_value=3e-91) EF hand family protein [Solanum demissum];; (*SWP) sp|Q94AZ4|CML13_ARATH (e_value=5e-85) Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1;; (*TAIR) AT1G12310.1 (e_value=3e-86) | Symbols: | Calcium-binding EF-hand family protein | chr1:4187500-4187946 REVERSE LENGTH=148;; (*ITAG) Solyc11g072270.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52555099-52557686 transcript_region:SL2.40ch11:52555099..52557686- go_terms:GO:0005509 functional_description:"Calmodulin (AHRD V1 ***- B6T4U8_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00035080g0005.1 protein AED:0.08 eAED:0.08 QI:169|0.85|0.87|1|0.85|0.87|8|213|353; (*GB) gi|225457221|ref|XP_002280848.1| (e_value=8e-166) PREDICTED: mitochondrial substrate carrier family protein X-like [Vitis vinifera];; (*SWP) sp|Q55E45|MCFE_DICDI (e_value=6e-35) Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1;; (*TAIR) AT1G74240.1 (e_value=4e-151) | Symbols: | Mitochondrial substrate carrier family protein | chr1:27917437-27919987 FORWARD LENGTH=364;; (*ITAG) Solyc12g056660.1.1 (e_value=7e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48016818-48021020 transcript_region:SL2.40ch12:48016818..48021020- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00026858g0004.1 protein AED:0.11 eAED:0.13 QI:0|1|0.62|1|0.85|0.75|8|0|599; (*GB) gi|225445232|ref|XP_002284425.1| (e_value=2e-151) PREDICTED: proline-rich receptor-like protein kinase PERK1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=4e-145) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G24550.1 (e_value=3e-146) | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960411-8963303 FORWARD LENGTH=652;; (*ITAG) Solyc08g068250.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54557887-54563179 transcript_region:SL2.40ch08:54557887..54563179- go_terms:GO:0004672 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 **** RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004672 NbS00043740g0003.1 protein AED:0.21 eAED:0.25 QI:0|0|0|0.66|1|1|3|0|447; (*GB) gi|359479252|ref|XP_002275878.2| (e_value=1e-78) PREDICTED: uncharacterized protein LOC100251674 [Vitis vinifera];; (*TAIR) AT5G12330.4 (e_value=9e-71) | Symbols: LRP1 | Lateral root primordium (LRP) protein-related | chr5:3987677-3989408 REVERSE LENGTH=407;; (*ITAG) Solyc11g064800.1.1 (e_value=6e-114) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47078600-47083111 transcript_region:SL2.40ch11:47078600..47083111- functional_description:"Stylish (AHRD V1 *--- D2KC71_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702 "; NbC23889011g0002.1 protein AED:0.23 eAED:0.60 QI:0|0|0|1|0|0|2|0|79; (*GB) gi|166203411|gb|ABY84674.1| (e_value=1e-31) fertilization-independent endosperm protein [Nicotiana tabacum];; (*SWP) sp|Q9LT47|FIE_ARATH (e_value=8e-19) Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2;; (*TAIR) AT3G20740.1 (e_value=6e-20) | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like superfamily protein | chr3:7249064-7252254 REVERSE LENGTH=369;; (*ITAG) Solyc07g064090.2.1 (e_value=3e-32) genomic_reference:SL2.40ch07 gene_region:63598484-63603661 transcript_region:SL2.40ch07:63598484..63603661- go_terms:GO:0042802 functional_description:"Fertilization-independent endosperm protein (AHRD V1 **-- B0LUT0_SOLLC); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00036830g0003.1 protein AED:0.10 eAED:0.14 QI:179|0.66|0.85|1|0.66|0.71|7|177|333; (*GB) gi|359479187|ref|XP_002270352.2| (e_value=3e-132) PREDICTED: uncharacterized protein LOC100259925 [Vitis vinifera];; (*SWP) sp|Q6DGT7|NSE1_DANRE (e_value=2e-13) Non-structural maintenance of chromosomes element 1 homolog OS=Danio rerio GN=nsmce1 PE=2 SV=1;; (*TAIR) AT5G21140.1 (e_value=8e-112) | Symbols: emb1379 | embryo defective 1379 | chr5:7187416-7189521 REVERSE LENGTH=312;; (*ITAG) Solyc01g006210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:833604-837884 transcript_region:SL2.40ch01:833604..837884- functional_description:"Non-structural maintenance of chromosomes element 1 homolog (AHRD V1 ***- B5X8H0_SALSA); contains Interpro domain(s) IPR011513 Nse1 non-SMC component of SMC5-6 complex "; NbS00036830g0004.1 protein AED:0.37 eAED:0.53 QI:0|0|0|1|0|0|5|0|115 NbS00031268g0009.1 protein AED:0.14 eAED:0.15 QI:0|0.77|0.6|1|0.66|0.8|10|0|521; (*GB) gi|45387403|gb|AAS60192.1| (e_value=0.0) hexokinase 1a [Nicotiana tabacum];; (*SWP) sp|Q9SEK2|HXK1_TOBAC (e_value=0.0) Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1;; (*TAIR) AT2G19860.1 (e_value=0.0) | Symbols: ATHXK2, HXK2 | hexokinase 2 | chr2:8570818-8573762 FORWARD LENGTH=502;; (*ITAG) Solyc03g121070.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:63353339-63358640 transcript_region:SL2.40ch03:63353339..63358640- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q8H0Q2_SOLLC); contains Interpro domain(s) IPR019807 Hexokinase, conserved site IPR001312 Hexokinase "; GO:0004340 NbS00031268g0002.1 protein AED:0.17 eAED:0.17 QI:575|1|0.8|1|0.75|0.6|5|0|278; (*GB) gi|365818553|gb|AEX00365.1| (e_value=4e-111) IAA26 [Solanum lycopersicum];; (*SWP) sp|Q8LAL2|IAA26_ARATH (e_value=4e-74) Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2;; (*TAIR) AT3G16500.1 (e_value=3e-75) | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269;; (*ITAG) Solyc03g121060.2.1 (e_value=8e-114) genomic_reference:SL2.40ch03 gene_region:63350693-63353201 transcript_region:SL2.40ch03:63350693..63353201+ go_terms:GO:0003700 functional_description:"Auxin response factor 9 (AHRD V1 *-** ARFI_ARATH); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00040911g0004.1 protein AED:0.25 eAED:0.24 QI:0|0.75|0.4|1|0.75|0.4|5|0|171; (*GB) gi|255556685|ref|XP_002519376.1| (e_value=7e-90) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G02410.3 (e_value=9e-78) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298). | chr2:632887-634613 FORWARD LENGTH=260;; (*ITAG) Solyc10g044840.1.1 (e_value=7e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23753213-23760216 transcript_region:SL2.40ch10:23753213..23760216- functional_description:"PIN domain containing protein (Yacp-like protein) (AHRD V1 *--- C7TLS1_LACRL); contains Interpro domain(s) IPR010298 Protein of unknown function DUF901 "; NbS00008558g0004.1 protein AED:0.13 eAED:0.13 QI:0|1|0.8|1|1|1|5|0|398; (*GB) gi|4827253|dbj|BAA77603.1| (e_value=0.0) plastidic aldolase [Nicotiana paniculata];; (*SWP) sp|Q944G9|ALFC2_ARATH (e_value=0.0) Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=2;; (*TAIR) AT4G38970.1 (e_value=0.0) | Symbols: FBA2 | fructose-bisphosphate aldolase 2 | chr4:18163714-18165659 REVERSE LENGTH=398;; (*ITAG) Solyc01g110360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:88844597-88847246 transcript_region:SL2.40ch01:88844597..88847246+ go_terms:GO:0005507 functional_description:"Fructose-bisphosphate aldolase (AHRD V1 ***- B0FPD8_SOLTU); contains Interpro domain(s) IPR000741 Fructose-bisphosphate aldolase, class-I "; GO:0005507 NbS00049342g0004.1 protein AED:0.15 eAED:0.15 QI:0|1|0|1|1|1|2|0|137; (*GB) gi|292679519|dbj|BAI99301.1| (e_value=1e-65) putative methionine synthase [Shorea bullata];; (*SWP) sp|Q42699|METE_CATRO (e_value=3e-61) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT3G03780.3 (e_value=4e-58) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=1e-69) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00040770g0004.1 protein AED:0.14 eAED:0.14 QI:13|0.88|0.9|1|0.55|0.7|10|303|627; (*GB) gi|359489254|ref|XP_002265189.2| (e_value=0.0) PREDICTED: protein WAX2-like [Vitis vinifera];; (*SWP) sp|Q8H1Z0|WAX2_ARATH (e_value=3e-100) Protein WAX2 OS=Arabidopsis thaliana GN=WAX2 PE=1 SV=1;; (*TAIR) AT1G02205.3 (e_value=0.0) | Symbols: CER1 | Fatty acid hydroxylase superfamily | chr1:418818-422154 FORWARD LENGTH=630;; (*ITAG) Solyc01g088400.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:74964023-74968482 transcript_region:SL2.40ch01:74964023..74968482+ go_terms:GO:0009924 functional_description:"CER1 (AHRD V1 **-- B6TFH3_MAIZE); contains Interpro domain(s) IPR006694 Fatty acid hydroxylase "; GO:0009924 NbS00058591g0001.1 protein AED:0.05 eAED:0.33 QI:0|0|0.5|1|0|0|2|0|155; (*GB) gi|356542284|ref|XP_003539599.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100811987 [Glycine max];; (*SWP) sp|Q5JNJ5|ENL1_ORYSJ (e_value=2e-19) Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1;; (*TAIR) AT5G53870.1 (e_value=1e-18) | Symbols: ENODL1, AtENODL1 | early nodulin-like protein 1 | chr5:21870033-21871228 REVERSE LENGTH=370;; (*ITAG) Solyc07g053880.1.1 (e_value=3e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:59612845-59614270 transcript_region:SL2.40ch07:59612845..59614270+ go_terms:GO:0009055 functional_description:"Early nodulin-55-1 (Fragment) (AHRD V1 *--- NO551_SOYBN); contains Interpro domain(s) IPR008972 Cupredoxin "; GO:0009055 NbS00055152g0005.1 protein AED:0.26 eAED:0.27 QI:0|1|1|1|1|1|11|327|591; (*GB) gi|255549607|ref|XP_002515855.1| (e_value=0.0) fk506 binding protein, putative [Ricinus communis];; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=0.0) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=0.0) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00055152g0002.1 protein AED:0.27 eAED:0.27 QI:0|-1|0|1|-1|1|1|0|137; (*ITAG) Solyc06g073850.1.1 (e_value=1e-40) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:41993432-41993875 transcript_region:SL2.40ch06:41993432..41993875- functional_description:"Unknown Protein (AHRD V1)"; NbS00009142g0010.1 protein AED:0.06 eAED:0.06 QI:0|0.85|0.75|0.87|0.85|0.75|8|850|215; (*GB) gi|255574019|ref|XP_002527927.1| (e_value=4e-128) abc transporter, putative [Ricinus communis];; (*SWP) sp|Q8RY46|AB26B_ARATH (e_value=1e-117) ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1;; (*TAIR) AT1G70610.1 (e_value=8e-119) | Symbols: ATTAP1, TAP1 | transporter associated with antigen processing protein 1 | chr1:26622086-26626331 FORWARD LENGTH=700;; (*ITAG) Solyc12g070280.1.1 (e_value=1e-143) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:55486255-55488702 transcript_region:SL2.40ch12:55486255..55488702+ go_terms:GO:0017111,GO:0016887 functional_description:"Lipid A export ATP-binding/permease protein MsbA (AHRD V1 ***- B9NVE8_9RHOB); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00009142g0013.1 protein AED:0.25 eAED:0.25 QI:150|0.8|0.81|1|0.6|0.63|11|0|442; (*GB) gi|225470565|ref|XP_002272060.1| (e_value=4e-177) PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q8RY46|AB26B_ARATH (e_value=8e-165) ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1;; (*TAIR) AT1G70610.1 (e_value=6e-166) | Symbols: ATTAP1, TAP1 | transporter associated with antigen processing protein 1 | chr1:26622086-26626331 FORWARD LENGTH=700;; (*ITAG) Solyc12g070270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:55455072-55471983 transcript_region:SL2.40ch12:55455072..55471983+ go_terms:GO:0005215 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0005215 NbS00006671g0002.1 protein AED:0.14 eAED:0.14 QI:0|-1|0|1|-1|1|1|0|408; (*GB) gi|21536982|gb|AAM61323.1| (e_value=0.0) nucleotide sugar epimerase, putative [Arabidopsis thaliana];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=0.0) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=0.0) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc03g083550.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:47036392-47037612 transcript_region:SL2.40ch03:47036392..47037612- go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00016661g0011.1 protein AED:0.00 eAED:0.00 QI:318|1|1|1|0.5|0.66|3|389|111 NbS00016661g0001.1 protein AED:0.44 eAED:0.44 QI:0|-1|0|1|-1|1|1|0|81; (*GB) gi|296088734|emb|CBI38184.3| (e_value=9e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43400.1 (e_value=2e-34) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:17426182-17428149 REVERSE LENGTH=655;; (*ITAG) Solyc01g009530.1.1 (e_value=2e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:3784538-3785794 transcript_region:SL2.40ch01:3784538..3785794+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH)"; NbS00016661g0013.1 protein AED:0.26 eAED:0.29 QI:0|0|0|1|0|0|3|0|334; (*GB) gi|224075499|ref|XP_002304655.1| (e_value=1e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT5G13210.1 (e_value=2e-102) | Symbols: | Uncharacterised conserved protein UCP015417, vWA | chr5:4214567-4216588 FORWARD LENGTH=673;; (*ITAG) Solyc09g089940.1.1 (e_value=8e-89) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:64900265-64902178 transcript_region:SL2.40ch09:64900265..64902178+ functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 *--- Q9LRY2_ARATH); contains Interpro domain(s) IPR011205 Uncharacterized conserved protein UCP015417, vWA "; NbS00004829g0004.1 protein AED:0.07 eAED:0.07 QI:0|1|0.5|1|1|1|2|0|655; (*GB) gi|255574758|ref|XP_002528287.1| (e_value=0.0) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G34940.1 (e_value=0.0) | Symbols: ARO1 | armadillo repeat only 1 | chr4:16639760-16641754 FORWARD LENGTH=664;; (*ITAG) Solyc01g111270.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89342004-89344615 transcript_region:SL2.40ch01:89342004..89344615+ go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 ***- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00004829g0016.1 protein AED:0.12 eAED:0.12 QI:0|0.5|0|1|0.5|0.66|3|0|1412; (*GB) gi|359474855|ref|XP_002277504.2| (e_value=0.0) PREDICTED: translocase of chloroplast 120, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SLF3|TC132_ARATH (e_value=0.0) Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1;; (*TAIR) AT2G16640.1 (e_value=0.0) | Symbols: ATTOC132, TOC132 | multimeric translocon complex in the outer envelope membrane 132 | chr2:7211489-7215109 REVERSE LENGTH=1206;; (*ITAG) Solyc01g111240.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89317519-89321842 transcript_region:SL2.40ch01:89317519..89321842- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *--- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00004829g0017.1 protein AED:0.25 eAED:0.25 QI:0|0|0.5|1|0|0.5|2|119|266; (*GB) gi|121631|sp|P27484.1|GRP2_NICSY (e_value=1e-66) RecName: Full=Glycine-rich protein 2;; (*SWP) sp|P27484|GRP2_NICSY (e_value=1e-47) Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1;; (*TAIR) AT2G21060.1 (e_value=3e-31) | Symbols: ATGRP2B, ATCSP4, GRP2B | glycine-rich protein 2B | chr2:9036983-9037588 REVERSE LENGTH=201;; (*ITAG) Solyc10g055250.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51991131-51991640 transcript_region:SL2.40ch10:51991131..51991640- go_terms:GO:0003676,GO:0008270,GO:0006355 functional_description:"Cold shock protein-1 (AHRD V1 *-*- Q8LPA7_WHEAT); contains Interpro domain(s) IPR002059 Cold-shock protein, DNA-binding "; GO:0003676,GO:0008270,GO:0006355 NbS00004829g0014.1 protein AED:0.27 eAED:0.34 QI:60|0|0|1|0|0|2|0|198; (*GB) gi|224105205|ref|XP_002313726.1| (e_value=1e-116) predicted protein [Populus trichocarpa];; (*TAIR) AT4G38690.1 (e_value=8e-110) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr4:18074743-18075699 REVERSE LENGTH=318;; (*ITAG) Solyc01g111250.2.1 (e_value=1e-124) genomic_reference:SL2.40ch01 gene_region:89325238-89326603 transcript_region:SL2.40ch01:89325238..89326603+ go_terms:GO:0023034,GO:0006629 functional_description:"Phosphatidylinositol-specific phospholipase c (AHRD V1 *-*- B9UXN2_LISMO); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629 NbS00046944g0001.1 protein AED:0.08 eAED:0.08 QI:0|-1|0|1|-1|1|1|0|108; (*GB) gi|148278097|gb|ABQ53931.1| (e_value=6e-31) lipid transfer protein [Sesamum indicum];; (*SWP) sp|Q39950|NLTP_HELAN (e_value=7e-28) Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1;; (*TAIR) AT2G38540.1 (e_value=4e-23) | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein 1 | chr2:16130418-16130893 FORWARD LENGTH=118;; (*ITAG) Solyc08g067500.1.1 (e_value=1e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:53720916-53721287 transcript_region:SL2.40ch08:53720916..53721287+ go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- A9YUH6_PLAOI); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00017363g0004.1 protein AED:0.00 eAED:0.00 QI:33|1|0.66|1|1|1|3|194|77; (*GB) gi|356576165|ref|XP_003556204.1| (e_value=5e-42) PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Glycine max];; (*TAIR) AT1G34430.1 (e_value=1e-43) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=3e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00018677g0021.1 protein AED:0.02 eAED:0.02 QI:0|1|0.75|1|1|1|4|0|300; (*GB) gi|297736470|emb|CBI25341.3| (e_value=7e-123) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q149N8|SHPRH_HUMAN (e_value=8e-40) E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2;; (*TAIR) AT2G40770.1 (e_value=2e-105) | Symbols: | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding | chr2:17013535-17021315 REVERSE LENGTH=1664;; (*ITAG) Solyc03g095690.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:50329554-50335009 transcript_region:SL2.40ch03:50329554..50335009+ go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 3 (AHRD V1 *--- CHD3_DROME); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00018677g0022.1 protein AED:0.18 eAED:0.20 QI:104|0.78|0.55|0.95|0.52|0.5|20|0|1437; (*GB) gi|359486454|ref|XP_003633446.1| (e_value=0.0) PREDICTED: E3 ubiquitin-protein ligase SHPRH-like [Vitis vinifera];; (*SWP) sp|Q7TPQ3|SHPRH_MOUSE (e_value=1e-74) E3 ubiquitin-protein ligase SHPRH OS=Mus musculus GN=Shprh PE=1 SV=1;; (*TAIR) AT2G40770.1 (e_value=0.0) | Symbols: | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding | chr2:17013535-17021315 REVERSE LENGTH=1664;; (*ITAG) Solyc03g095680.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:50296179-50312535 transcript_region:SL2.40ch03:50296179..50312535+ go_terms:GO:0005923,GO:0005524,GO:0008270 functional_description:"SNF2 helicase (AHRD V1 *--- D7FHS8_ECTSI); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005923,GO:0005524,GO:0008270 NbS00018677g0009.1 protein AED:0.80 eAED:0.83 QI:0|0|0|1|1|1|2|0|89 NbS00018677g0024.1 protein AED:0.13 eAED:0.19 QI:0|0|0|0.75|0.66|0.5|4|0|403; (*GB) gi|225439709|ref|XP_002272768.1| (e_value=1e-106) PREDICTED: transcription elongation factor A protein 3 [Vitis vinifera];; (*SWP) sp|Q15560|TCEA2_HUMAN (e_value=4e-32) Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1;; (*TAIR) AT2G38560.1 (e_value=1e-91) | Symbols: TFIIS | transcript elongation factor IIS | chr2:16134802-16136319 FORWARD LENGTH=378;; (*ITAG) Solyc03g095720.2.1 (e_value=2e-169) genomic_reference:SL2.40ch03 gene_region:50344450-50348825 transcript_region:SL2.40ch03:50344450..50348825- go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 **** B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515,GO:0016944 NbS00018677g0011.1 protein AED:0.27 eAED:0.29 QI:0|0|0|0.5|1|1|2|0|93; (*GB) gi|328685103|gb|AEB33951.1| (e_value=9e-15) defective in induced resistance 3 protein [Nicotiana tabacum];; (*ITAG) Solyc03g121900.1.1 (e_value=3e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:63976596-63976916 transcript_region:SL2.40ch03:63976596..63976916- go_terms:GO:0008289,GO:0005319 functional_description:"PVR3-like protein (AHRD V1 ***- B6TYX6_MAIZE); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005319 NbS00018677g0025.1 protein AED:0.46 eAED:0.49 QI:0|0|0|1|0|0|3|0|142; (*ITAG) Solyc06g035800.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00048969g0002.1 protein AED:0.31 eAED:0.31 QI:0|0|0|1|0|0|2|0|150; (*GB) gi|315000154|emb|CAE46646.2| (e_value=2e-80) cytochrome oxidase, subunit I [Solanum commersonii x Solanum tuberosum];; (*SWP) sp|P24794|COX1_BETVU (e_value=1e-78) Cytochrome c oxidase subunit 1 OS=Beta vulgaris GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=4e-78) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc07g019510.2.1 (e_value=3e-81) genomic_reference:SL2.40ch07 gene_region:11854353-11856013 transcript_region:SL2.40ch07:11854353..11856013- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00022912g0001.1 protein AED:0.25 eAED:0.25 QI:0|0|0|1|0|0|2|0|68; (*GB) gi|147843797|emb|CAN79460.1| (e_value=3e-21) hypothetical protein VITISV_022546 [Vitis vinifera];; (*TAIR) AT2G35585.1 (e_value=2e-21) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14936889-14937873 FORWARD LENGTH=156;; (*ITAG) Solyc08g076180.2.1 (e_value=4e-32) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00009460g0002.1 protein AED:0.28 eAED:0.45 QI:0|0.4|0.5|0.83|1|1|6|0|157; (*GB) gi|334185913|ref|NP_001190064.1| (e_value=1e-59) DNA-directed RNA polymerase II subunit RPB11 [Arabidopsis thaliana];; (*SWP) sp|Q38859|RPB11_ARATH (e_value=2e-58) DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1;; (*TAIR) AT3G52090.2 (e_value=3e-62) | Symbols: NRPB11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=146;; (*ITAG) Solyc11g069910.1.1 (e_value=4e-65) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51605382-51607881 transcript_region:SL2.40ch11:51605382..51607881+ go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase II subunit J (AHRD V1 ***- B4FJS1_MAIZE); contains Interpro domain(s) IPR009025 DNA-directed RNA polymerase, RBP11-like "; GO:0006350 NbS00047971g0003.1 protein AED:0.14 eAED:0.16 QI:654|0.81|0.91|1|0.45|0.41|12|510|249; (*GB) gi|225451130|ref|XP_002266266.1| (e_value=6e-51) PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera];; (*SWP) sp|B9DHD7|VAP22_ARATH (e_value=3e-20) Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1;; (*TAIR) AT1G08820.2 (e_value=2e-21) | Symbols: VAP27-2 | vamp/synaptobrevin-associated protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386;; (*ITAG) Solyc01g098200.2.1 (e_value=9e-131) genomic_reference:SL2.40ch01 gene_region:80548656-80555399 transcript_region:SL2.40ch01:80548656..80555399- go_terms:GO:0005515 functional_description:"Vesicle-associated membrane protein-associated protein A (AHRD V1 **-- B6UGD8_MAIZE); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005515 NbS00010190g0003.1 protein AED:0.21 eAED:0.27 QI:0|0.5|0.33|1|1|1|3|0|111; (*GB) gi|192910668|gb|ACF06442.1| (e_value=1e-45) MYB transcription factor MYB92 [Elaeis guineensis];; (*SWP) sp|Q9S9K9|MYB3_ARATH (e_value=2e-41) Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1;; (*TAIR) AT1G22640.1 (e_value=1e-42) | Symbols: ATMYB3, MYB3 | myb domain protein 3 | chr1:8006289-8007219 FORWARD LENGTH=257;; (*ITAG) Solyc12g096200.1.1 (e_value=2e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63561525-63562547 transcript_region:SL2.40ch12:63561525..63562547- go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 **-- D0VYJ9_DIOKA); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00047954g0007.1 protein AED:0.25 eAED:0.25 QI:197|0.81|0.75|1|0.72|0.75|12|819|684; (*GB) gi|356500545|ref|XP_003519092.1| (e_value=0.0) PREDICTED: ABC transporter G family member 22-like [Glycine max];; (*SWP) sp|Q93YS4|AB22G_ARATH (e_value=0.0) ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1;; (*TAIR) AT5G06530.1 (e_value=0.0) | Symbols: | ABC-2 type transporter family protein | chr5:1990060-1994605 REVERSE LENGTH=751;; (*ITAG) Solyc01g006720.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:1301729-1309554 transcript_region:SL2.40ch01:1301729..1309554- go_terms:GO:0008559 functional_description:"ABC transporter G family member 22 (AHRD V1 ***- AB22G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00012329g0002.1 protein AED:0.25 eAED:0.32 QI:29|0|0|1|0|0|4|0|171; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-52) hypothetical protein [Nicotiana tabacum]; NbS00012876g0002.1 protein AED:0.00 eAED:0.00 QI:0|-1|0|1|-1|1|1|0|261; (*GB) gi|359482158|ref|XP_003632719.1| (e_value=6e-95) PREDICTED: uncharacterized protein LOC100267595 [Vitis vinifera];; (*SWP) sp|Q39265|ZFP6_ARATH (e_value=1e-12) Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1;; (*TAIR) AT2G41940.1 (e_value=3e-44) | Symbols: ZFP8 | zinc finger protein 8 | chr2:17507556-17508329 FORWARD LENGTH=257;; (*ITAG) Solyc03g058160.2.1 (e_value=3e-68) genomic_reference:SL2.40ch03 gene_region:20451688-20456967 transcript_region:SL2.40ch03:20451688..20456967+ go_terms:GO:0003700 functional_description:"EPF-type Cis2-His2 zinc finger transcription factor (AHRD V1 *-** D8RBD0_SELML); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00012876g0003.1 protein AED:0.04 eAED:0.04 QI:232|1|1|1|0.5|0.33|3|285|207; (*GB) gi|224140795|ref|XP_002323764.1| (e_value=6e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=2e-40) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=2e-41) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc01g105310.2.1 (e_value=4e-78) genomic_reference:SL2.40ch01 gene_region:85282545-85284363 transcript_region:SL2.40ch01:85282545..85284363- go_terms:GO:0006508,GO:0005737 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0006508,GO:0005737 NbS00012876g0015.1 protein AED:0.14 eAED:0.14 QI:385|0.5|0.33|0.66|0.5|0|3|0|54; (*GB) gi|356541884|ref|XP_003539402.1| (e_value=1e-18) PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max];; (*SWP) sp|Q8L840|RQL4A_ARATH (e_value=4e-20) ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana GN=RECQL4A PE=2 SV=1;; (*TAIR) AT1G10930.1 (e_value=3e-21) | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188;; (*ITAG) Solyc01g103960.2.1 (e_value=7e-25) genomic_reference:SL2.40ch01 gene_region:84197683-84209378 transcript_region:SL2.40ch01:84197683..84209378+ go_terms:GO:0043138 functional_description:"ATP-dependent DNA helicase Q1 (AHRD V1 *-** C1GRE2_PARBA); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type "; GO:0043138 NbS00040632g0010.1 protein AED:0.25 eAED:0.28 QI:65|0|0.25|1|0|0.5|4|797|169; (*GB) gi|54261828|gb|AAV31178.1| (e_value=1e-15) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc04g016320.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:7109276-7113214 transcript_region:SL2.40ch04:7109276..7113214- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *--- D7KDG7_ARALY); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00040632g0008.1 protein AED:0.43 eAED:0.43 QI:0|0.5|0|1|0|0|3|0|126; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-16) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc09g056490.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:44960018-44962489 transcript_region:SL2.40ch09:44960018..44962489+ go_terms:GO:0008270 functional_description:"MuDRA transposase-like (AHRD V1 *-*- Q5GIT1_CUCME); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00047822g0011.1 protein AED:0.12 eAED:0.12 QI:251|0.66|0.75|1|1|1|4|169|393; (*GB) gi|225438452|ref|XP_002277212.1| (e_value=0.0) PREDICTED: serine/threonine-protein kinase SRPK2 [Vitis vinifera];; (*SWP) sp|Q45FA5|SRPK_PHYPO (e_value=4e-65) Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1;; (*TAIR) AT4G35500.2 (e_value=0.0) | Symbols: | Protein kinase superfamily protein | chr4:16857475-16859407 FORWARD LENGTH=439;; (*ITAG) Solyc00g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch00 gene_region:6708738-6712713 transcript_region:SL2.40ch00:6708738..6712713- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U105_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00047822g0015.1 protein AED:0.61 eAED:0.87 QI:0|0|0|0.75|1|1|4|0|74 NbS00047822g0013.1 protein AED:0.07 eAED:0.07 QI:0|0|0.66|1|0|0.66|3|259|384; (*GB) gi|225438454|ref|XP_002277336.1| (e_value=1e-69) PREDICTED: uncharacterized protein LOC100242269 isoform 2 [Vitis vinifera];; (*ITAG) Solyc02g082570.1.1 (e_value=9e-150) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:40814597-40815712 transcript_region:SL2.40ch02:40814597..40815712+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047822g0012.1 protein AED:0.10 eAED:0.10 QI:0|0.85|0.53|1|0.85|0.93|15|0|1275; (*GB) gi|42562225|ref|NP_173582.2| (e_value=0.0) calcium-binding EF-hand-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q9HGL2|YHLA_SCHPO (e_value=8e-16) Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=2 SV=1;; (*TAIR) AT1G21630.1 (e_value=0.0) | Symbols: | Calcium-binding EF hand family protein | chr1:7581457-7587796 FORWARD LENGTH=1218;; (*ITAG) Solyc02g082540.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40780785-40792518 transcript_region:SL2.40ch02:40780785..40792518- go_terms:GO:0005515 functional_description:"Actin cytoskeleton-regulatory complex protein pan1 (AHRD V1 *--- PAN1_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type IPR000261 EPS15 homology (EH) "; GO:0005515 NbS00047822g0014.1 protein AED:0.19 eAED:0.45 QI:0|0|0|1|0|0|5|0|249; (*GB) gi|255561435|ref|XP_002521728.1| (e_value=4e-43) amino acid transporter, putative [Ricinus communis];; (*TAIR) AT4G38250.1 (e_value=1e-33) | Symbols: | Transmembrane amino acid transporter family protein | chr4:17935533-17936843 FORWARD LENGTH=436;; (*ITAG) Solyc02g082510.1.1 (e_value=3e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40776670-40777947 transcript_region:SL2.40ch02:40776670..40777947+ go_terms:GO:0015171 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00003493g0002.1 protein AED:0.01 eAED:0.01 QI:0|0.66|0.5|0.75|0.33|0.25|4|152|59; (*GB) gi|225431699|ref|XP_002264607.1| (e_value=3e-20) PREDICTED: DNA topoisomerase 3-alpha [Vitis vinifera];; (*TAIR) AT5G63920.1 (e_value=4e-19) | Symbols: TOP3A, AtTOP3alpha | topoisomerase 3alpha | chr5:25574533-25581230 FORWARD LENGTH=926; NbS00014372g0008.1 protein AED:0.08 eAED:0.08 QI:0|1|0|1|1|0|2|0|50; (*ITAG) Solyc01g104410.2.1 (e_value=7e-12) genomic_reference:SL2.40ch01 gene_region:84540080-84547356 transcript_region:SL2.40ch01:84540080..84547356- go_terms:GO:0005622 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 *-*- A4X1A3_SALTO)"; GO:0005622 NbS00014372g0010.1 protein AED:0.33 eAED:0.35 QI:0|0.3|0.36|1|0.8|0.63|11|173|386; (*GB) gi|359486084|ref|XP_002273501.2| (e_value=1e-144) PREDICTED: sterol 3-beta-glucosyltransferase-like [Vitis vinifera];; (*TAIR) AT5G24750.1 (e_value=2e-128) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:8490821-8494536 REVERSE LENGTH=520;; (*ITAG) Solyc01g104410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:84540080-84547356 transcript_region:SL2.40ch01:84540080..84547356- go_terms:GO:0005622 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 *-*- A4X1A3_SALTO)"; GO:0005622 NbS00014372g0006.1 protein AED:0.39 eAED:0.44 QI:0|0.75|0.8|1|0|0.2|5|514|85 NbS00032525g0009.1 protein AED:0.10 eAED:0.10 QI:0|0.75|0.4|1|1|1|5|0|337; (*GB) gi|255567264|ref|XP_002524613.1| (e_value=3e-151) step II splicing factor slu7, putative [Ricinus communis];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=5e-150) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT1G65660.1 (e_value=6e-148) | Symbols: SMP1 | Pre-mRNA splicing Prp18-interacting factor | chr1:24418295-24421231 REVERSE LENGTH=535;; (*ITAG) Solyc09g072570.2.1 (e_value=3e-171) genomic_reference:SL2.40ch09 gene_region:60600116-60606656 transcript_region:SL2.40ch09:60600116..60606656- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00032525g0010.1 protein AED:0.05 eAED:0.05 QI:63|1|0.5|1|0|0|2|0|109; (*GB) gi|225438153|ref|XP_002278882.1| (e_value=2e-40) PREDICTED: actin-depolymerizing factor isoform 1 [Vitis vinifera];; (*SWP) sp|Q8SAG3|ADF_VITVI (e_value=6e-42) Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1;; (*TAIR) AT2G31200.1 (e_value=1e-39) | Symbols: ADF6, ATADF6 | actin depolymerizing factor 6 | chr2:13294171-13294948 FORWARD LENGTH=146;; (*ITAG) Solyc09g072590.2.1 (e_value=5e-50) genomic_reference:SL2.40ch09 gene_region:60613153-60615233 transcript_region:SL2.40ch09:60613153..60615233+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 6 (AHRD V1 **** D6BR51_9ROSI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00032525g0011.1 protein AED:0.23 eAED:0.23 QI:0|1|0.83|1|1|1|6|187|202; (*GB) gi|388498430|gb|AFK37281.1| (e_value=2e-42) unknown [Medicago truncatula];; (*TAIR) AT4G14385.2 (e_value=6e-31) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:8287196-8288622 REVERSE LENGTH=156;; (*ITAG) Solyc09g072580.2.1 (e_value=2e-58) genomic_reference:SL2.40ch09 gene_region:60608340-60612169 transcript_region:SL2.40ch09:60608340..60612169+ functional_description:"Chromatin modification-related protein MEAF6 (AHRD V1 *-*- EAF6_XENLA); contains Interpro domain(s) IPR015418 Histone H4 acetyltransferase, NuA4 complex, Eaf6 "; NbS00032525g0015.1 protein AED:0.23 eAED:0.27 QI:0|0|0|1|0|0|3|0|472; (*GB) gi|2570523|gb|AAB82146.1| (e_value=0.0) inorganic phosphate transporter [Solanum lycopersicum];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=0.0) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=0.0) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g066410.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60426564-60428153 transcript_region:SL2.40ch09:60426564..60428153+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00047146g0003.1 protein AED:0.57 eAED:0.77 QI:0|0|0|1|0|0.5|2|0|67 NbS00000201g0007.1 protein AED:0.03 eAED:0.08 QI:0|0.25|0|1|0.5|0.4|5|0|403; (*GB) gi|225436460|ref|XP_002274821.1| (e_value=1e-107) PREDICTED: uncharacterized protein LOC100253409 [Vitis vinifera];; (*TAIR) AT2G28150.1 (e_value=3e-90) | Symbols: | Domain of unknown function (DUF966) | chr2:12000015-12002227 FORWARD LENGTH=540;; (*ITAG) Solyc06g030470.2.1 (e_value=2e-143) genomic_reference:SL2.40ch06 gene_region:15436256-15438408 transcript_region:SL2.40ch06:15436256..15438408- functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00048711g0006.1 protein AED:0.03 eAED:0.19 QI:0|1|0.5|1|1|1|2|19|448; (*GB) gi|225448028|ref|XP_002273123.1| (e_value=0.0) PREDICTED: F-box protein At1g10780 [Vitis vinifera];; (*SWP) sp|Q9SAC4|FB2_ARATH (e_value=5e-162) F-box protein At1g10780 OS=Arabidopsis thaliana GN=At1g10780 PE=2 SV=1;; (*TAIR) AT1G10780.1 (e_value=4e-163) | Symbols: | F-box/RNI-like superfamily protein | chr1:3592875-3594310 REVERSE LENGTH=418;; (*ITAG) Solyc01g104230.2.1 (e_value=3e-179) genomic_reference:SL2.40ch01 gene_region:84436367-84437864 transcript_region:SL2.40ch01:84436367..84437864- functional_description:"F-box family protein (AHRD V1 ***- D7KLJ3_ARALY)"; NbS00056160g0003.1 protein AED:0.37 eAED:0.37 QI:0|0.5|0|1|0.5|0.33|3|0|77; (*GB) gi|157042747|gb|ABV02025.1| (e_value=2e-20) HMG-CoA synthase [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|P54873|HMCS_ARATH (e_value=7e-19) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=5e-20) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc08g080170.2.1 (e_value=3e-22) genomic_reference:SL2.40ch08 gene_region:60656531-60661072 transcript_region:SL2.40ch08:60656531..60661072- go_terms:GO:0004421 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 **** A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic "; GO:0004421 NbS00002323g0008.1 protein AED:0.00 eAED:0.00 QI:90|1|0.5|1|0|0|2|50|63; (*GB) gi|255556782|ref|XP_002519424.1| (e_value=2e-15) DNA binding protein, putative [Ricinus communis];; (*ITAG) Solyc09g008520.2.1 (e_value=4e-27) genomic_reference:SL2.40ch09 gene_region:2003633-2012302 transcript_region:SL2.40ch09:2003633..2012302- go_terms:GO:0003677 functional_description:"Chromodomain helicase DNA binding protein 3 (Fragment) (AHRD V1 *--* B1AR16_MOUSE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00002323g0010.1 protein AED:0.34 eAED:0.34 QI:0|0|0|0.5|1|1|2|0|138; (*ITAG) Solyc11g068410.1.1 (e_value=6e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50228262-50229808 transcript_region:SL2.40ch11:50228262..50229808- functional_description:"Unknown Protein (AHRD V1)"; NbS00002323g0007.1 protein AED:0.46 eAED:0.46 QI:352|0.33|0.5|0.5|0.66|0.5|4|0|70 NbS00030349g0005.1 protein AED:0.34 eAED:0.40 QI:0|0|0|1|1|1|2|0|101; (*ITAG) Solyc12g039050.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00030349g0011.1 protein AED:0.05 eAED:0.05 QI:0|1|1|1|0.75|0.8|5|241|415; (*GB) gi|225429787|ref|XP_002282746.1| (e_value=0.0) PREDICTED: zinc finger protein 622 [Vitis vinifera];; (*SWP) sp|Q91VY9|ZN622_MOUSE (e_value=8e-26) Zinc finger protein 622 OS=Mus musculus GN=Znf622 PE=2 SV=1;; (*TAIR) AT4G31420.1 (e_value=5e-162) | Symbols: | Zinc finger protein 622 | chr4:15245987-15247763 REVERSE LENGTH=404;; (*ITAG) Solyc12g096450.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63710205-63713019 transcript_region:SL2.40ch12:63710205..63713019+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7MB67_ARALY); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00030349g0010.1 protein AED:0.27 eAED:0.27 QI:0|0.4|0.5|1|1|0.83|6|0|242; (*GB) gi|388521823|gb|AFK48973.1| (e_value=2e-84) unknown [Lotus japonicus];; (*SWP) sp|Q9LM60|B3GT5_ARATH (e_value=9e-81) Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1;; (*TAIR) AT1G77810.2 (e_value=3e-83) | Symbols: | Galactosyltransferase family protein | chr1:29260899-29263001 REVERSE LENGTH=384;; (*ITAG) Solyc08g069060.2.1 (e_value=1e-91) genomic_reference:SL2.40ch08 gene_region:55354098-55359018 transcript_region:SL2.40ch08:55354098..55359018+ go_terms:GO:0048531 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **** B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0048531 NbS00037510g0001.1 protein AED:0.22 eAED:0.22 QI:0|1|0.75|1|1|1|4|0|435; (*GB) gi|343172700|gb|AEL99053.1| (e_value=7e-147) pre-mRNA-splicing factor, partial [Silene latifolia];; (*SWP) sp|Q5VTL8|PR38B_HUMAN (e_value=2e-42) Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1;; (*TAIR) AT5G37370.1 (e_value=8e-144) | Symbols: ATSRL1 | PRP38 family protein | chr5:14812845-14815988 REVERSE LENGTH=393;; (*ITAG) Solyc04g014560.2.1 (e_value=6e-169) genomic_reference:SL2.40ch04 gene_region:4825799-4832573 transcript_region:SL2.40ch04:4825799..4832573+ functional_description:"Pre-mRNA-splicing factor 38B (AHRD V1 *-*- C0HBS4_SALSA); contains Interpro domain(s) IPR005037 PRP38 "; NbS00037510g0014.1 protein AED:0.39 eAED:0.41 QI:0|1|0|1|0|0.5|2|0|70; (*GB) gi|255575198|ref|XP_002528503.1| (e_value=1e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G37478.1 (e_value=1e-25) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:14881560-14883799 FORWARD LENGTH=178;; (*ITAG) Solyc04g014550.2.1 (e_value=4e-38) genomic_reference:SL2.40ch04 gene_region:4821261-4824079 transcript_region:SL2.40ch04:4821261..4824079+ functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *--- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00037510g0015.1 protein AED:0.64 eAED:0.65 QI:0|0.4|0.33|0.5|0.8|0.66|6|0|142; (*GB) gi|296085139|emb|CBI28634.3| (e_value=2e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G37478.1 (e_value=2e-12) | Symbols: | TPX2 (targeting protein for Xklp2) protein family | chr5:14881560-14883799 FORWARD LENGTH=178;; (*ITAG) Solyc04g014550.2.1 (e_value=1e-38) genomic_reference:SL2.40ch04 gene_region:4821261-4824079 transcript_region:SL2.40ch04:4821261..4824079+ functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *--- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; NbS00037510g0018.1 protein AED:0.10 eAED:0.10 QI:246|0.75|0.6|0.8|0.5|0.6|5|0|103; (*GB) gi|224116030|ref|XP_002317189.1| (e_value=2e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|P43254|COP1_ARATH (e_value=7e-44) E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2;; (*TAIR) AT2G32950.1 (e_value=5e-45) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc11g011980.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4927052-4931762 transcript_region:SL2.40ch11:4927052..4931762- go_terms:GO:0008270 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00037510g0012.1 protein AED:0.19 eAED:0.19 QI:0|1|0.85|1|0.83|1|7|437|593; (*GB) gi|224135215|ref|XP_002327594.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-173) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=0.0) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc04g014570.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:4832869-4838038 transcript_region:SL2.40ch04:4832869..4838038- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00037510g0019.1 protein AED:0.11 eAED:1.00 QI:2|0|0|1|0|0|2|223|17 NbS00010975g0013.1 protein AED:0.06 eAED:0.06 QI:251|0.4|0.33|1|0.4|0.33|6|0|248; (*GB) gi|225466125|ref|XP_002267975.1| (e_value=2e-104) PREDICTED: cell number regulator 6 isoform 1 [Vitis vinifera];; (*SWP) sp|B6SGC5|CNR6_MAIZE (e_value=7e-95) Cell number regulator 6 OS=Zea mays GN=CNR6 PE=2 SV=1;; (*TAIR) AT2G45010.1 (e_value=2e-88) | Symbols: | PLAC8 family protein | chr2:18568045-18569615 FORWARD LENGTH=244;; (*ITAG) Solyc05g051690.2.1 (e_value=5e-104) genomic_reference:SL2.40ch05 gene_region:61245909-61251364 transcript_region:SL2.40ch05:61245909..61251364- functional_description:"Cell number regulator 6 (AHRD V1 **-- B6SGC5_MAIZE); contains Interpro domain(s) IPR006461 Protein of unknown function Cys-rich "; NbS00010975g0012.1 protein AED:0.10 eAED:0.10 QI:0|1|0.91|1|0.72|0.82|23|0|913; (*GB) gi|297744975|emb|CBI38567.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q924W5|SMC6_MOUSE (e_value=5e-47) Structural maintenance of chromosomes protein 6 OS=Mus musculus GN=Smc6 PE=2 SV=1;; (*TAIR) AT5G61460.1 (e_value=0.0) | Symbols: MIM, ATRAD18, SMC6B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24714551-24721841 REVERSE LENGTH=1057;; (*ITAG) Solyc05g051680.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:61207858-61233676 transcript_region:SL2.40ch05:61207858..61233676+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes family protein (AHRD V1 ***- D7M0L2_ARALY); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00028631g0008.1 protein AED:0.01 eAED:0.02 QI:176|1|0.8|1|1|0.9|10|0|1585; (*GB) gi|225428139|ref|XP_002278562.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100258889 [Vitis vinifera];; (*SWP) sp|Q9BWH6|RPAP1_HUMAN (e_value=5e-23) RNA polymerase II-associated protein 1 OS=Homo sapiens GN=RPAP1 PE=1 SV=3;; (*TAIR) AT4G38440.1 (e_value=0.0) | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II-associated protein 1, C-terminal (InterPro:IPR013929), RNA polymerase II-associated protein 1, N-terminal (InterPro:IPR013930); Has 276 Blast hits to 220 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:17989115-17994549 FORWARD LENGTH=1465;; (*ITAG) Solyc01g111910.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89829346-89839875 transcript_region:SL2.40ch01:89829346..89839875- go_terms:GO:0005488 functional_description:"RNA polymerase II-associated protein 1 (AHRD V1 *-*- RPAP1_HUMAN); contains Interpro domain(s) IPR013930 RNA polymerase II-associated protein 1, N-terminal "; GO:0005488 NbS00028631g0011.1 protein AED:0.09 eAED:0.09 QI:0|0|0.25|1|0.66|1|4|160|329; (*GB) gi|225428137|ref|XP_002281120.1| (e_value=6e-118) PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase [Vitis vinifera];; (*SWP) sp|Q9LEL5|4OMT_COPJA (e_value=7e-61) 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1;; (*TAIR) AT4G35160.1 (e_value=9e-89) | Symbols: | O-methyltransferase family protein | chr4:16730989-16732808 REVERSE LENGTH=382;; (*ITAG) Solyc01g111900.2.1 (e_value=3e-143) genomic_reference:SL2.40ch01 gene_region:89826309-89827725 transcript_region:SL2.40ch01:89826309..89827725- go_terms:GO:0008171,GO:0046983 functional_description:"O-methyltransferase-like protein (AHRD V1 ***- Q9T003_ARATH); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171,GO:0046983 NbS00021026g0003.1 protein AED:0.16 eAED:0.16 QI:0|0.66|0.28|1|0.66|0.85|7|0|331; (*GB) gi|225436765|ref|XP_002267320.1| (e_value=6e-129) PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1 [Vitis vinifera];; (*SWP) sp|Q84W91|C3H32_ARATH (e_value=4e-120) Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2;; (*TAIR) AT2G47850.3 (e_value=3e-121) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr2:19595953-19598119 FORWARD LENGTH=468;; (*ITAG) Solyc09g074640.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:61952322-61957433 transcript_region:SL2.40ch09:61952322..61957433- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 32 (AHRD V1 ***- C3H32_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00027524g0009.1 protein AED:0.06 eAED:0.09 QI:8|0.5|0|1|0|0|3|0|801; (*GB) gi|297736269|emb|CBI24907.3| (e_value=3e-92) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G47940.1 (e_value=2e-47) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19409407-19411893 REVERSE LENGTH=749;; (*ITAG) Solyc11g007060.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1532029-1536153 transcript_region:SL2.40ch11:1532029..1536153- functional_description:"Genomic DNA chromosome 5 TAC clone K16F13 (AHRD V1 *-*- Q9FGV5_ARATH)"; NbS00051712g0005.1 protein AED:0.39 eAED:0.39 QI:122|1|1|1|0.83|0.71|7|419|214; (*GB) gi|225454823|ref|XP_002277184.1| (e_value=1e-60) PREDICTED: uncharacterized protein LOC100242589 [Vitis vinifera];; (*TAIR) AT5G17070.1 (e_value=5e-45) | Symbols: | CONTAINS InterPro DOMAIN/s: Protein phosphatase 4 core regulatory subunit R2 (InterPro:IPR015267); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5613514-5616088 REVERSE LENGTH=277;; (*ITAG) Solyc03g062680.2.1 (e_value=2e-94) genomic_reference:SL2.40ch03 gene_region:29296061-29306162 transcript_region:SL2.40ch03:29296061..29306162- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR015267 Protein phosphatase 4 core regulatory subunit R2 "; NbS00013378g0014.1 protein AED:0.26 eAED:0.27 QI:12|1|0.5|1|1|1|2|0|348; (*GB) gi|225346677|gb|ACN86360.1| (e_value=0.0) GID1-5 [Gossypium hirsutum];; (*SWP) sp|Q940G6|GID1C_ARATH (e_value=0.0) Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1;; (*TAIR) AT5G27320.1 (e_value=0.0) | Symbols: ATGID1C, GID1C | alpha/beta-Hydrolases superfamily protein | chr5:9629254-9630746 FORWARD LENGTH=344;; (*ITAG) Solyc01g098390.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80677748-80680126 transcript_region:SL2.40ch01:80677748..80680126+ go_terms:GO:0008152 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00013378g0019.1 protein AED:0.30 eAED:0.31 QI:0|0.72|0.58|1|0.63|0.66|12|0|550; (*GB) gi|350539611|ref|NP_001234730.1| (e_value=0.0) Lyk13 precursor [Solanum lycopersicum];; (*SWP) sp|Q9LV48|PERK1_ARATH (e_value=5e-49) Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=1 SV=1;; (*TAIR) AT3G21630.1 (e_value=1e-148) | Symbols: CERK1, LYSM RLK1 | chitin elicitor receptor kinase 1 | chr3:7615543-7618530 REVERSE LENGTH=617;; (*ITAG) Solyc01g098410.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80694992-80699092 transcript_region:SL2.40ch01:80694992..80699092+ go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like kinase (AHRD V1 *-** C0SW32_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00013378g0003.1 protein AED:0.39 eAED:0.39 QI:0|-1|0|1|-1|1|1|0|119 NbS00013378g0016.1 protein AED:0.07 eAED:0.07 QI:165|1|1|1|1|1|6|218|151; (*GB) gi|255542502|ref|XP_002512314.1| (e_value=1e-79) Histidine-containing phosphotransfer protein, putative [Ricinus communis];; (*SWP) sp|Q9ZNV9|AHP1_ARATH (e_value=2e-61) Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1;; (*TAIR) AT3G21510.1 (e_value=2e-62) | Symbols: AHP1 | histidine-containing phosphotransmitter 1 | chr3:7578432-7579537 REVERSE LENGTH=154;; (*ITAG) Solyc01g098400.2.1 (e_value=2e-92) genomic_reference:SL2.40ch01 gene_region:80683099-80684846 transcript_region:SL2.40ch01:80683099..80684846- go_terms:GO:0009927 functional_description:"Histidine phosphotransfer protein (AHRD V1 **** B9I823_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0009927 NbS00013378g0017.1 protein AED:0.28 eAED:0.30 QI:390|0.16|0.30|0.84|0.91|0.92|13|0|954; (*GB) gi|359487960|ref|XP_003633682.1| (e_value=4e-151) PREDICTED: uncharacterized protein LOC100250287 [Vitis vinifera];; (*SWP) sp|Q8CCN5|BCAS3_MOUSE (e_value=2e-13) Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2;; (*TAIR) AT1G54710.1 (e_value=2e-120) | Symbols: ATATG18H, ATG18H | homolog of yeast autophagy 18 (ATG18) H | chr1:20417019-20420733 REVERSE LENGTH=927;; (*ITAG) Solyc01g098430.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:80701693-80711358 transcript_region:SL2.40ch01:80701693..80711358- functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00022592g0009.1 protein AED:0.09 eAED:0.09 QI:0|0.75|0.2|1|1|0.8|5|0|455; (*GB) gi|147802324|emb|CAN61650.1| (e_value=3e-18) hypothetical protein VITISV_027795 [Vitis vinifera];; (*ITAG) Solyc07g053360.2.1 (e_value=2e-51) genomic_reference:SL2.40ch07 gene_region:59144379-59146118 transcript_region:SL2.40ch07:59144379..59146118+ functional_description:"Seed biotin-containing protein SBP65 (AHRD V1 *--- SBP65_PEA); contains Interpro domain(s) IPR004238 Late embryogenesis abundant protein "; NbS00022592g0001.1 protein AED:0.23 eAED:0.23 QI:742|0.71|0.62|0.87|0.85|0.75|8|362|484; (*GB) gi|255568291|ref|XP_002525120.1| (e_value=2e-30) hypothetical protein RCOM_0553590 [Ricinus communis];; (*TAIR) AT2G31130.1 (e_value=7e-25) | Symbols: | unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). | chr2:13263829-13265534 REVERSE LENGTH=419;; (*ITAG) Solyc12g010830.1.1 (e_value=0.0) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3765641-3768837 transcript_region:SL2.40ch12:3765641..3768837- functional_description:"Unknown Protein (AHRD V1)"; NbC26317384g0001.1 protein AED:0.00 eAED:0.00 QI:467|-1|1|1|-1|1|1|0|462; (*GB) gi|359473439|ref|XP_002264637.2| (e_value=0.0) PREDICTED: U-box domain-containing protein 19-like [Vitis vinifera];; (*SWP) sp|Q9XIJ5|PUB18_ARATH (e_value=6e-112) U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1;; (*TAIR) AT1G10560.1 (e_value=5e-113) | Symbols: PUB18, ATPUB18 | plant U-box 18 | chr1:3484613-3486706 FORWARD LENGTH=697;; (*ITAG) Solyc05g005670.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:498016-500073 transcript_region:SL2.40ch05:498016..500073- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 *--- D7LSY5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00008062g0001.1 protein NbS00008062g0101.1 protein NbS00036573g0001.1 protein NbC26104776g0001.1 protein ; (*GB) gi|255540073|ref|XP_002511101.1| (e_value=6e-74) Transcription factor ICE1, putative [Ricinus communis];; (*SWP) sp|Q9LSE2|ICE1_ARATH (e_value=2e-71) Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1;; (*TAIR) AT3G26744.4 (e_value=1e-72) | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494;; (*ITAG) Solyc06g068870.2.1 (e_value=2e-87) genomic_reference:SL2.40ch06 gene_region:39083842-39089281 transcript_region:SL2.40ch06:39083842..39089281- go_terms:GO:0016563,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00011419g0004.1 protein ; (*GB) gi|57014015|ref|YP_173486.1| (e_value=4e-14) hypothetical protein NitaMp149 [Nicotiana tabacum]; NbC24000975g0001.1 protein ; (*GB) gi|302142585|emb|CBI19788.3| (e_value=8e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9AUR7|COPA2_ORYSJ (e_value=1e-55) Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1;; (*TAIR) AT1G62020.1 (e_value=2e-56) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=3e-65) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00003534g0002.1 protein NbS00019186g0001.1 protein NbS00033943g0001.1 protein NbS00000606g0004.1 protein NbS00031321g0002.1 protein ; (*GB) gi|20149052|gb|AAM12781.1| (e_value=9e-27) auxin-induced SAUR-like protein [Capsicum annuum];; (*TAIR) AT1G29490.1 (e_value=4e-14) | Symbols: | SAUR-like auxin-responsive protein family | chr1:10319835-10320143 FORWARD LENGTH=102;; (*ITAG) Solyc04g052980.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50444793-50445239 transcript_region:SL2.40ch04:50444793..50445239+ functional_description:"Auxin-responsive protein (AHRD V1 ***- A8IXW9_BRACM); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00007493g0001.1 protein NbS00032263g0001.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-19) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00000120g0102.1 protein NbS00040061g0001.1 protein NbS00015063g0001.1 protein NbS00029922g0003.1 protein NbS00021659g0001.1 protein NbS00001019g0002.1 protein ; (*GB) gi|343409092|gb|AEM23826.1| (e_value=4e-24) sesquiterpene synthase [Solanum habrochaites];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=1e-23) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT1G71695.1 (e_value=7e-15) | Symbols: | Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358;; (*ITAG) Solyc06g060180.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34531453-34535121 transcript_region:SL2.40ch06:34531453..34535121+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00012940g0002.1 protein NbS00013271g0001.1 protein NbS00003995g0003.1 protein NbS00047137g0001.1 protein ; (*GB) gi|75164750|sp|Q948X8.1|MTNA_TOBAC (e_value=5e-54) RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein;; (*SWP) sp|Q948X8|MTNA_TOBAC (e_value=2e-55) Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1;; (*TAIR) AT2G05830.3 (e_value=3e-36) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr2:2230057-2231839 FORWARD LENGTH=326;; (*ITAG) Solyc08g022210.2.1 (e_value=4e-50) genomic_reference:SL2.40ch08 gene_region:14105526-14113435 transcript_region:SL2.40ch08:14105526..14113435- go_terms:GO:0003743 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- B6TZD1_MAIZE); contains Interpro domain(s) IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase "; GO:0003743 NbS00010807g0001.1 protein ; (*GB) gi|357511943|ref|XP_003626260.1| (e_value=1e-65) DNA (cytosine-5)-methyltransferase 3A [Medicago truncatula];; (*TAIR) AT5G27650.1 (e_value=7e-67) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:9785511-9789094 FORWARD LENGTH=1072;; (*ITAG) Solyc01g099360.2.1 (e_value=7e-152) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00010807g0002.1 protein ; (*GB) gi|357511943|ref|XP_003626260.1| (e_value=7e-85) DNA (cytosine-5)-methyltransferase 3A [Medicago truncatula];; (*TAIR) AT5G27650.1 (e_value=9e-83) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:9785511-9789094 FORWARD LENGTH=1072;; (*ITAG) Solyc01g099360.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00001903g0002.1 protein NbS00030764g0001.1 protein NbS00002971g0002.1 protein NbS00047906g0001.1 protein ; (*GB) gi|15241149|ref|NP_197467.1| (e_value=1e-23) SITE-1 protease [Arabidopsis thaliana];; (*SWP) sp|Q14703|MBTP1_HUMAN (e_value=7e-21) Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=2e-26) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=1e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00047906g0002.1 protein NbS00023592g0003.1 protein NbS00002855g0001.1 protein NbS00059932g0001.1 protein ; (*GB) gi|224069026|ref|XP_002302882.1| (e_value=1e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WMN5|Y3913_ARATH (e_value=1e-22) Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2;; (*TAIR) AT3G59300.1 (e_value=8e-50) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:21918667-21921877 FORWARD LENGTH=459;; (*ITAG) Solyc06g073500.2.1 (e_value=1e-72) genomic_reference:SL2.40ch06 gene_region:41689633-41698876 transcript_region:SL2.40ch06:41689633..41698876+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059932g0002.1 protein ; (*GB) gi|225433778|ref|XP_002271925.1| (e_value=3e-56) PREDICTED: solute carrier family 35 member F1 [Vitis vinifera];; (*SWP) sp|Q5T1Q4|S35F1_HUMAN (e_value=5e-17) Solute carrier family 35 member F1 OS=Homo sapiens GN=SLC35F1 PE=2 SV=2;; (*TAIR) AT3G59310.1 (e_value=2e-46) | Symbols: | Eukaryotic protein of unknown function (DUF914) | chr3:21922316-21924313 REVERSE LENGTH=332;; (*ITAG) Solyc06g073520.2.1 (e_value=3e-71) genomic_reference:SL2.40ch06 gene_region:41703273-41710440 transcript_region:SL2.40ch06:41703273..41710440- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member F1 (AHRD V1 **-- B6U001_MAIZE); contains Interpro domain(s) IPR009262 Protein of unknown function DUF914, eukaryotic "; GO:0022857 NbS00034024g0001.1 protein NbS00034024g0101.1 protein NbC23541614g0001.1 protein ; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=2e-30) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|P52296|IMB1_RAT (e_value=4e-17) Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1;; (*TAIR) AT3G08943.1 (e_value=2e-31) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=9e-43) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00029156g0003.1 protein NbS00042352g0002.1 protein NbS00000080g0001.1 protein NbS00004740g0006.1 protein NbS00010648g0001.1 protein NbS00021563g0001.1 protein NbS00009042g0001.1 protein ; (*ITAG) Solyc08g044310.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00001395g0002.1 protein NbS00001395g0007.1 protein NbS00042979g0001.1 protein NbS00008465g0001.1 protein ; (*GB) gi|27227807|emb|CAD59412.1| (e_value=1e-39) SMC5 protein [Oryza sativa];; (*SWP) sp|Q805A1|SMC5_XENLA (e_value=1e-26) Structural maintenance of chromosomes protein 5 OS=Xenopus laevis GN=smc5 PE=2 SV=1;; (*TAIR) AT5G15920.1 (e_value=3e-41) | Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053;; (*ITAG) Solyc01g087720.2.1 (e_value=2e-40) genomic_reference:SL2.40ch01 gene_region:74386246-74416833 transcript_region:SL2.40ch01:74386246..74416833+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes family protein (AHRD V1 ***- D7M7H7_ARALY); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00030810g0001.1 protein NbS00005789g0004.1 protein NbS00012948g0002.1 protein NbS00015075g0002.1 protein NbS00007042g0001.1 protein NbS00061081g0001.1 protein ; (*GB) gi|224139800|ref|XP_002323282.1| (e_value=8e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G58000.1 (e_value=3e-23) | Symbols: | VQ motif-containing protein | chr3:21474950-21475477 FORWARD LENGTH=175; NbS00007082g0002.1 protein NbS00001815g0003.1 protein ; (*ITAG) Solyc12g043140.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44266393-44269129 transcript_region:SL2.40ch12:44266393..44269129- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00001815g0004.1 protein NbS00006338g0001.1 protein NbS00006338g0101.1 protein NbS00006850g0001.1 protein ; (*ITAG) Solyc05g041470.2.1 (e_value=2e-30) genomic_reference:SL2.40ch05 gene_region:50961226-50966509 transcript_region:SL2.40ch05:50961226..50966509- functional_description:"Transient receptor potential cation channel subfamily A member 1 homolog (AHRD V1 *--- TRPA1_CAEEL); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00006850g0002.1 protein NbS00030180g0001.1 protein NbS00019020g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=5e-12) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00000260g0005.1 protein ; (*GB) gi|359486639|ref|XP_002284011.2| (e_value=1e-74) PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Vitis vinifera];; (*SWP) sp|O80647|PP195_ARATH (e_value=7e-50) Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1;; (*TAIR) AT2G39620.1 (e_value=5e-51) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836;; (*ITAG) Solyc04g016540.1.1 (e_value=3e-109) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00024811g0002.1 protein ; (*GB) gi|225432826|ref|XP_002279567.1| (e_value=0.0) PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera];; (*SWP) sp|Q9LY77|ACA12_ARATH (e_value=0.0) Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1;; (*TAIR) AT3G63380.1 (e_value=0.0) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:23407112-23410213 REVERSE LENGTH=1033;; (*ITAG) Solyc09g082870.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63946249-63949485 transcript_region:SL2.40ch09:63946249..63949485- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00052359g0001.1 protein ; (*GB) gi|255544942|ref|XP_002513532.1| (e_value=1e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g065240.1.1 (e_value=4e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47693585-47702912 transcript_region:SL2.40ch11:47693585..47702912+ go_terms:GO:0008152 functional_description:"Saccharopine dehydrogenase family protein expressed (AHRD V1 ***- Q2QY08_ORYSJ); contains Interpro domain(s) IPR005097 Saccharopine dehydrogenase "; GO:0008152 NbS00018507g0002.1 protein NbS00017441g0001.1 protein NbS00043433g0003.1 protein NbS00022676g0004.1 protein NbS00005067g0002.1 protein NbC24429506g0001.1 protein ; (*GB) gi|255567297|ref|XP_002524629.1| (e_value=9e-74) chaperonin containing t-complex protein 1, alpha subunit, tcpa, putative [Ricinus communis];; (*SWP) sp|P28769|TCPA_ARATH (e_value=9e-73) T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1;; (*TAIR) AT3G20050.1 (e_value=7e-74) | Symbols: ATTCP-1, TCP-1 | T-complex protein 1 alpha subunit | chr3:6998544-7002266 REVERSE LENGTH=545;; (*ITAG) Solyc01g090750.2.1 (e_value=1e-88) genomic_reference:SL2.40ch01 gene_region:76162903-76172451 transcript_region:SL2.40ch01:76162903..76172451+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit alpha (AHRD V1 ***- B9SF60_RICCO); contains Interpro domain(s) IPR012715 T-complex protein 1, alpha subunit "; GO:0051082 NbS00011208g0002.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=5e-24) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*TAIR) AT1G34430.1 (e_value=4e-24) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00006580g0001.1 protein NbS00039230g0003.1 protein NbS00042063g0001.1 protein NbS00034729g0003.1 protein ; (*GB) gi|296081870|emb|CBI20875.3| (e_value=1e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G11530.1 (e_value=9e-12) | Symbols: EMF1 | embryonic flower 1 (EMF1) | chr5:3697140-3700930 FORWARD LENGTH=1096;; (*ITAG) Solyc11g071250.1.1 (e_value=8e-135) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51865253-51870977 transcript_region:SL2.40ch11:51865253..51870977- functional_description:"EMBYO FLOWERING 1-like protein (Fragment) (AHRD V1 *-*- Q52ZP2_PEA)"; NbC24909401g0001.1 protein ; (*GB) gi|225423549|ref|XP_002274857.1| (e_value=4e-42) PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=1e-30) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=9e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=5e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00058609g0002.1 protein ; (*GB) gi|255568607|ref|XP_002525277.1| (e_value=7e-54) beta-glucanase, putative [Ricinus communis];; (*TAIR) AT3G49880.1 (e_value=1e-52) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=6e-68) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00061640g0001.1 protein NbS00015392g0001.1 protein NbS00019161g0001.1 protein NbS00023966g0001.1 protein NbS00023966g0002.1 protein NbS00005980g0201.1 protein NbS00005980g0208.1 protein NbS00033011g0003.1 protein NbS00028612g0001.1 protein NbS00011008g0001.1 protein ; (*GB) gi|255556806|ref|XP_002519436.1| (e_value=1e-48) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09925.1 (e_value=5e-45) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr3:3051868-3052784 REVERSE LENGTH=171; NbS00023687g0001.1 protein ; (*GB) gi|317016596|gb|ACT90640.2| (e_value=2e-28) inducer of CBF expression [Camellia sinensis];; (*SWP) sp|Q9LPW3|SCRM2_ARATH (e_value=7e-12) Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1;; (*TAIR) AT1G12860.1 (e_value=6e-13) | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:4384758-4386392 FORWARD LENGTH=450;; (*ITAG) Solyc06g068870.2.1 (e_value=2e-32) genomic_reference:SL2.40ch06 gene_region:39083842-39089281 transcript_region:SL2.40ch06:39083842..39089281- go_terms:GO:0016563,GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00040988g0003.1 protein ; (*GB) gi|147795796|emb|CAN61045.1| (e_value=1e-106) hypothetical protein VITISV_016590 [Vitis vinifera];; (*SWP) sp|Q9VDQ7|NAA25_DROME (e_value=5e-21) Phagocyte signaling-impaired protein OS=Drosophila melanogaster GN=psidin PE=2 SV=1;; (*TAIR) AT5G58450.1 (e_value=8e-95) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057910.2.1 (e_value=2e-110) genomic_reference:SL2.40ch09 gene_region:47817635-47838635 transcript_region:SL2.40ch09:47817635..47838635+ go_terms:GO:0005488 functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 **-- NAA25_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006648g0003.1 protein ; (*ITAG) Solyc12g009400.1.1 (e_value=2e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00018683g0001.1 protein NbS00007244g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-31) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00017761g0002.1 protein ; (*GB) gi|224111628|ref|XP_002315924.1| (e_value=4e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g008920.2.1 (e_value=1e-17) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00017775g0002.1 protein NbS00002081g0001.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=6e-16) predicted protein [Populus trichocarpa]; NbS00012337g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025761g0002.1 protein ; (*GB) gi|224143445|ref|XP_002336041.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g066510.1.1 (e_value=3e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:66889646-66898959 transcript_region:SL2.40ch01:66889646..66898959- functional_description:"Genomic DNA chromosome 5 TAC clone K21P3 (AHRD V1 **-- Q9FJ23_ARATH); contains Interpro domain(s) IPR001298 Filamin/ABP280 repeat "; NbC23239095g0001.1 protein ; (*GB) gi|111054505|gb|ABH04326.1| (e_value=6e-25) NPR1 [Nicotiana tabacum];; (*SWP) sp|P93002|NPR1_ARATH (e_value=4e-15) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1;; (*TAIR) AT1G64280.1 (e_value=3e-16) | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory protein (NPR1) | chr1:23853329-23855407 REVERSE LENGTH=593;; (*ITAG) Solyc07g040690.2.1 (e_value=5e-26) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00061393g0001.1 protein NbS00061393g0002.1 protein NbS00004058g0001.1 protein NbS00020110g0003.1 protein ; (*GB) gi|224059034|ref|XP_002299685.1| (e_value=2e-61) heavy metal ATPase [Populus trichocarpa];; (*SWP) sp|Q9SZC9|HMA6_ARATH (e_value=2e-52) Copper-transporting ATPase PAA1, chloroplastic OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1;; (*TAIR) AT4G33520.2 (e_value=1e-53) | Symbols: PAA1, HMA6 | P-type ATP-ase 1 | chr4:16118993-16125849 FORWARD LENGTH=949;; (*ITAG) Solyc01g105160.2.1 (e_value=7e-89) genomic_reference:SL2.40ch01 gene_region:85193879-85204204 transcript_region:SL2.40ch01:85193879..85204204- go_terms:GO:0006508,GO:0016020,GO:0008152,GO:0016021 functional_description:"Copper-transporting P-type ATPase (AHRD V1 ***- Q12Y93_METBU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0006508,GO:0016020,GO:0008152,GO:0016021 NbS00010493g0001.1 protein ; (*GB) gi|224158034|ref|XP_002337925.1| (e_value=4e-21) predicted protein [Populus trichocarpa]; NbS00010493g0006.1 protein ; (*GB) gi|67003513|dbj|BAD99418.1| (e_value=5e-15) acyl-transferase [Capsicum annuum];; (*ITAG) Solyc08g014490.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:4520981-4522291 transcript_region:SL2.40ch08:4520981..4522291- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00048193g0001.1 protein NbS00004891g0002.1 protein NbS00004891g0004.1 protein NbC24476571g0001.1 protein ; (*GB) gi|356530469|ref|XP_003533803.1| (e_value=2e-50) PREDICTED: protein Red [Glycine max];; (*TAIR) AT2G26460.1 (e_value=2e-42) | Symbols: SMU2 | RED family protein | chr2:11255049-11258913 REVERSE LENGTH=585;; (*ITAG) Solyc07g017490.2.1 (e_value=1e-55) genomic_reference:SL2.40ch07 gene_region:7378323-7382780 transcript_region:SL2.40ch07:7378323..7382780+ go_terms:GO:0005634 functional_description:"Red family protein (AHRD V1 ***- D7LDI9_ARALY); contains Interpro domain(s) IPR012916 RED-like, N-terminal "; GO:0005634 NbS00005874g0003.1 protein NbS00007728g0004.1 protein NbS00029952g0002.1 protein NbS00021120g0001.1 protein NbS00030773g0002.1 protein NbC24398580g0001.1 protein ; (*GB) gi|225447141|ref|XP_002271314.1| (e_value=4e-42) PREDICTED: vacuolar protein 8 [Vitis vinifera];; (*TAIR) AT2G05810.2 (e_value=5e-40) | Symbols: | ARM repeat superfamily protein | chr2:2215225-2216967 REVERSE LENGTH=580;; (*ITAG) Solyc07g049390.1.1 (e_value=7e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56986780-56988489 transcript_region:SL2.40ch07:56986780..56988489- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7L9A0_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00014193g0002.1 protein ; (*ITAG) Solyc01g097110.1.1 (e_value=4e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79816578-79835266 transcript_region:SL2.40ch01:79816578..79835266- functional_description:"Fanconi anemia group D2 protein (AHRD V1 *-*- FACD2_HUMAN)"; NbS00014775g0004.1 protein NbS00025495g0003.1 protein NbS00027639g0001.1 protein ; (*GB) gi|45544877|gb|AAS67374.1| (e_value=9e-33) CONSTANS interacting protein 6, partial [Solanum lycopersicum];; (*SWP) sp|Q84N37|PVIP_PEA (e_value=5e-27) OBERON-like protein (Fragment) OS=Pisum sativum GN=PVIP PE=1 SV=1;; (*TAIR) AT5G48160.2 (e_value=5e-28) | Symbols: OBE2 | Protein of unknown function (DUF1423) | chr5:19528019-19529820 REVERSE LENGTH=574;; (*ITAG) Solyc07g047780.2.1 (e_value=3e-35) genomic_reference:SL2.40ch07 gene_region:56318843-56323880 transcript_region:SL2.40ch07:56318843..56323880- go_terms:GO:0008270 functional_description:"CONSTANS interacting protein 6 (Fragment) (AHRD V1 **-- Q2VY13_SOLLC); contains Interpro domain(s) IPR004082 Protein of unknown function DUF1423, plant "; GO:0008270 NbC24400184g0001.1 protein ; (*GB) gi|186511064|ref|NP_191030.3| (e_value=2e-73) putative inorganic phosphate transporter 1-7 [Arabidopsis thaliana];; (*SWP) sp|Q494P0|PHT17_ARATH (e_value=6e-75) Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2;; (*TAIR) AT3G54700.1 (e_value=5e-76) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc06g034200.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20519555-20521159 transcript_region:SL2.40ch06:20519555..20521159+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00059212g0001.1 protein ; (*GB) gi|255581670|ref|XP_002531638.1| (e_value=3e-39) casein kinase, putative [Ricinus communis];; (*TAIR) AT3G13670.1 (e_value=1e-37) | Symbols: | Protein kinase family protein | chr3:4469434-4473234 FORWARD LENGTH=703;; (*ITAG) Solyc01g006120.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:776048-784378 transcript_region:SL2.40ch01:776048..784378+ go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9LID3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00006861g0002.1 protein NbS00006861g0005.1 protein NbS00025151g0001.1 protein ; (*GB) gi|225436355|ref|XP_002271043.1| (e_value=7e-51) PREDICTED: lysine histidine transporter 1 [Vitis vinifera];; (*TAIR) AT1G08230.2 (e_value=2e-42) | Symbols: | Transmembrane amino acid transporter family protein | chr1:2583715-2586700 REVERSE LENGTH=451;; (*ITAG) Solyc11g066800.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49679693-49686191 transcript_region:SL2.40ch11:49679693..49686191- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9HLA1_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00043794g0002.1 protein ; (*ITAG) Solyc08g060910.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42975229-42978250 transcript_region:SL2.40ch08:42975229..42978250- go_terms:GO:0008270,GO:0006278 functional_description:"Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contains Interpro domain(s) IPR000477 RNA-directed DNA polymerase (reverse transcriptase) "; GO:0008270,GO:0006278 NbS00025220g0002.1 protein NbS00025220g0003.1 protein NbS00054924g0001.1 protein ; (*GB) gi|21553644|gb|AAM62737.1| (e_value=2e-15) Quinone oxidoreductase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9ZUC1|QORL_ARATH (e_value=2e-16) Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2;; (*TAIR) AT1G23740.1 (e_value=2e-17) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE LENGTH=386;; (*ITAG) Solyc05g005480.2.1 (e_value=7e-18) genomic_reference:SL2.40ch05 gene_region:352211-355615 transcript_region:SL2.40ch05:352211..355615+ go_terms:GO:0004024 functional_description:"Oxidoreductase zinc-binding dehydrogenase (AHRD V1 **** C2RQQ3_BACCE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00001462g0001.1 protein NbS00014588g0002.1 protein NbS00003492g0003.1 protein NbS00027764g0002.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbC26225559g0001.1 protein NbS00013410g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-26) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00016042g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-21) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016042g0008.1 protein ; (*ITAG) Solyc06g065710.2.1 (e_value=7e-33) genomic_reference:SL2.40ch06 gene_region:37530153-37541354 transcript_region:SL2.40ch06:37530153..37541354- go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B-B (AHRD V1 *--- PD5BB_XENLA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00013515g0001.1 protein ; (*GB) gi|225436658|ref|XP_002276327.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g28010-like [Vitis vinifera];; (*SWP) sp|Q9SUD8|PP340_ARATH (e_value=8e-168) Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1;; (*TAIR) AT4G28010.1 (e_value=6e-169) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:13930379-13932493 FORWARD LENGTH=704;; (*ITAG) Solyc11g005940.1.1 (e_value=5e-86) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:757823-760342 transcript_region:SL2.40ch11:757823..760342- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- A7BJL1_RAPSA); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012442g0102.1 protein NbS00011043g0002.1 protein NbS00015207g0002.1 protein NbC24049480g0001.1 protein ; (*GB) gi|15594035|emb|CAC69852.1| (e_value=4e-64) nucleic acid binding protein [Nicotiana tabacum];; (*SWP) sp|Q9SX79|RB47C_ARATH (e_value=1e-51) Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1;; (*TAIR) AT1G47490.2 (e_value=3e-54) | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C | chr1:17424801-17426114 FORWARD LENGTH=310;; (*ITAG) Solyc04g079310.2.1 (e_value=5e-59) genomic_reference:SL2.40ch04 gene_region:61412534-61417774 transcript_region:SL2.40ch04:61412534..61417774+ go_terms:GO:0042802 functional_description:"RNA Binding Protein 47 (AHRD V1 **-* Q9LEB3_NICPL); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0042802 NbS00035084g0002.1 protein NbS00006871g0001.1 protein ; (*GB) gi|225458412|ref|XP_002281901.1| (e_value=2e-28) PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=7e-29) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=5e-30) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc12g042690.1.1 (e_value=3e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:43475288-43476868 transcript_region:SL2.40ch12:43475288..43476868- functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00008709g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-57) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00012438g0001.1 protein NbS00006680g0001.1 protein NbS00000263g0004.1 protein NbS00019030g0002.1 protein ; (*GB) gi|297738233|emb|CBI27434.3| (e_value=1e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=4e-28) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=3e-29) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc12g042690.1.1 (e_value=2e-45) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:43475288-43476868 transcript_region:SL2.40ch12:43475288..43476868- functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006858g0002.1 protein NbS00022608g0001.1 protein NbS00007032g0001.1 protein ; (*GB) gi|224092105|ref|XP_002309475.1| (e_value=5e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55A09|Y9963_DICDI (e_value=2e-16) Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1;; (*TAIR) AT4G35780.1 (e_value=8e-20) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:16946729-16950405 REVERSE LENGTH=570;; (*ITAG) Solyc08g062140.1.1 (e_value=6e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:47692672-47697995 transcript_region:SL2.40ch08:47692672..47697995- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00002351g0005.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=1e-25) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc03g080090.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:45541347-45546345 transcript_region:SL2.40ch03:45541347..45546345+ go_terms:GO:0003713,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003713,GO:0003700 NbC25154325g0001.1 protein NbS00002134g0104.1 protein NbS00001478g0002.1 protein NbS00001478g0004.1 protein ; (*GB) gi|359488343|ref|XP_002283020.2| (e_value=1e-28) PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Vitis vinifera];; (*ITAG) Solyc02g089770.2.1 (e_value=2e-48) genomic_reference:SL2.40ch02 gene_region:46055433-46058696 transcript_region:SL2.40ch02:46055433..46058696+ go_terms:GO:0004022,GO:0045551 functional_description:"Dihydroflavonol-4-reductase (AHRD V1 ***- B6TK03_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0004022,GO:0045551 NbS00012341g0002.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-27) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00033687g0001.1 protein ; (*GB) gi|225452304|ref|XP_002272292.1| (e_value=5e-56) PREDICTED: glucuronokinase 1 [Vitis vinifera];; (*SWP) sp|Q93ZC9|GLAK1_ARATH (e_value=6e-52) Glucuronokinase 1 OS=Arabidopsis thaliana GN=GLCAK1 PE=1 SV=1;; (*TAIR) AT3G01640.1 (e_value=4e-53) | Symbols: ATGLCAK, GLCAK | glucuronokinase G | chr3:239418-241198 FORWARD LENGTH=362;; (*ITAG) Solyc02g093440.2.1 (e_value=2e-69) genomic_reference:SL2.40ch02 gene_region:48893526-48896917 transcript_region:SL2.40ch02:48893526..48896917+ go_terms:GO:0004335 functional_description:"GHMP kinase family protein (AHRD V1 ***- D7L9M7_ARALY); contains Interpro domain(s) IPR014721 Ribosomal protein S5 domain 2-type fold "; GO:0004335 NbS00041164g0001.1 protein ; (*GB) gi|147801375|emb|CAN61508.1| (e_value=3e-25) hypothetical protein VITISV_000627 [Vitis vinifera]; NbS00029861g0003.1 protein NbS00029861g0005.1 protein NbS00038068g0002.1 protein NbS00005792g0002.1 protein ; (*GB) gi|357491025|ref|XP_003615800.1| (e_value=1e-53) Ubiquitin-activating enzyme E1 [Medicago truncatula];; (*SWP) sp|P93028|UBE11_ARATH (e_value=1e-52) Ubiquitin-activating enzyme E1 1 OS=Arabidopsis thaliana GN=UBA1 PE=1 SV=1;; (*TAIR) AT2G30110.1 (e_value=8e-54) | Symbols: ATUBA1, MOS5, UBA1 | ubiquitin-activating enzyme 1 | chr2:12852632-12857369 REVERSE LENGTH=1080;; (*ITAG) Solyc06g007320.2.1 (e_value=2e-58) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00010427g0103.1 protein NbS00028157g0003.1 protein ; (*ITAG) Solyc09g072730.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60860048-60860654 transcript_region:SL2.40ch09:60860048..60860654- go_terms:GO:0008270 functional_description:"GRF zinc finger family protein expressed (AHRD V1 *-*- Q10CE1_ORYSJ); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbC23280598g0001.1 protein ; (*ITAG) Solyc07g047690.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:56247177-56249543 transcript_region:SL2.40ch07:56247177..56249543+ go_terms:GO:0006457,GO:0031072 functional_description:"Curved DNA-binding protein (AHRD V1 *--- CBPA_SALCH); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbC23543402g0001.1 protein ; (*GB) gi|25989506|gb|AAM29183.1| (e_value=6e-40) ACC oxidase [Solanum tuberosum];; (*SWP) sp|Q9ZUN4|ACCO1_ARATH (e_value=1e-17) 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana GN=ACO1 PE=2 SV=1;; (*TAIR) AT2G19590.1 (e_value=8e-19) | Symbols: ACO1, ATACO1 | ACC oxidase 1 | chr2:8476239-8477354 REVERSE LENGTH=310;; (*ITAG) Solyc07g026650.2.1 (e_value=7e-41) genomic_reference:SL2.40ch07 gene_region:30139957-30141385 transcript_region:SL2.40ch07:30139957..30141385- go_terms:GO:0045431,GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **** Q6A1K7_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431,GO:0009815 NbS00039963g0001.1 protein NbS00051186g0001.1 protein NbS00055582g0001.1 protein ; (*SWP) sp|Q9ATL9|TIP21_MAIZE (e_value=4e-14) Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1;; (*ITAG) Solyc06g060760.2.1 (e_value=4e-14) genomic_reference:SL2.40ch06 gene_region:35181267-35182590 transcript_region:SL2.40ch06:35181267..35182590+ go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q39956_HELAN); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00009120g0002.1 protein NbS00022982g0001.1 protein NbC24176595g0001.1 protein ; (*GB) gi|15236308|ref|NP_192252.1| (e_value=4e-66) pre-mRNA-processing factor 6 [Arabidopsis thaliana];; (*SWP) sp|A1A5S1|PRP6_RAT (e_value=2e-49) Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2 SV=1;; (*TAIR) AT4G03430.1 (e_value=9e-69) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029; NbS00009589g0102.1 protein NbS00010251g0001.1 protein NbS00024209g0004.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=3e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00024503g0001.1 protein ; (*GB) gi|255555293|ref|XP_002518683.1| (e_value=2e-35) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G76060.1 (e_value=4e-26) | Symbols: EMB1793 | LYR family of Fe/S cluster biogenesis protein | chr1:28543367-28543840 REVERSE LENGTH=157; NbS00052138g0001.1 protein ; (*GB) gi|224085641|ref|XP_002307647.1| (e_value=5e-32) condensin complex components subunit [Populus trichocarpa];; (*TAIR) AT3G54670.3 (e_value=3e-26) | Symbols: TTN8 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1239;; (*ITAG) Solyc06g083870.2.1 (e_value=4e-48) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbC24121238g0001.1 protein ; (*GB) gi|359494312|ref|XP_002268896.2| (e_value=1e-44) PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Vitis vinifera];; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=6e-28) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=4e-29) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc07g065630.2.1 (e_value=2e-68) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbC26268318g0001.1 protein NbC24284759g0001.1 protein ; (*GB) gi|225443025|ref|XP_002267485.1| (e_value=2e-16) PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera];; (*ITAG) Solyc04g078270.2.1 (e_value=5e-44) genomic_reference:SL2.40ch04 gene_region:60632095-60634606 transcript_region:SL2.40ch04:60632095..60634606- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00026141g0002.1 protein NbS00026141g0004.1 protein NbS00007962g0001.1 protein NbS00022695g0002.1 protein ; (*GB) gi|145408590|ref|YP_001152214.1| (e_value=6e-27) ORF124 [Pinus koraiensis];; (*ITAG) Solyc04g039760.1.1 (e_value=5e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:30503874-30507412 transcript_region:SL2.40ch04:30503874..30507412+ go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2SXY2_9MAGN); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00020830g0002.1 protein NbS00012816g0101.1 protein NbS00005381g0003.1 protein NbC24706158g0001.1 protein ; (*GB) gi|224133400|ref|XP_002321558.1| (e_value=1e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94A40|COPA1_ARATH (e_value=8e-42) Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2;; (*TAIR) AT1G62020.1 (e_value=6e-43) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc07g032100.2.1 (e_value=3e-75) genomic_reference:SL2.40ch07 gene_region:34994261-35003424 transcript_region:SL2.40ch07:34994261..35003424+ go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00029665g0001.1 protein NbS00002146g0001.1 protein NbS00021000g0001.1 protein ; (*GB) gi|356497127|ref|XP_003517414.1| (e_value=8e-117) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max];; (*SWP) sp|Q9P2J5|SYLC_HUMAN (e_value=3e-65) Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2;; (*TAIR) AT1G09620.1 (e_value=4e-105) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=7e-130) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00008129g0003.1 protein ; (*GB) gi|224100903|ref|XP_002312060.1| (e_value=3e-81) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=2e-74) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G12360.1 (e_value=1e-75) | Symbols: ITN1 | Ankyrin repeat family protein | chr3:3934146-3936495 FORWARD LENGTH=590;; (*ITAG) Solyc05g054830.2.1 (e_value=4e-103) genomic_reference:SL2.40ch05 gene_region:63788805-63793279 transcript_region:SL2.40ch05:63788805..63793279+ go_terms:GO:0042803 functional_description:"Ankyrin-repeat protein (AHRD V1 **-- A2CIR5_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00041889g0001.1 protein ; (*GB) gi|357439659|ref|XP_003590107.1| (e_value=3e-14) Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula];; (*ITAG) Solyc09g089550.2.1 (e_value=5e-35) genomic_reference:SL2.40ch09 gene_region:64600682-64605131 transcript_region:SL2.40ch09:64600682..64605131- functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 *--- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; NbS00000429g0001.1 protein NbS00005815g0002.1 protein ; (*GB) gi|147805812|emb|CAN60544.1| (e_value=2e-22) hypothetical protein VITISV_006250 [Vitis vinifera];; (*TAIR) AT2G01050.1 (e_value=4e-18) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbC24203375g0001.1 protein ; (*GB) gi|73811195|gb|AAZ86534.1| (e_value=2e-68) pyruvate kinase [Capsicum annuum];; (*SWP) sp|P22200|KPYC_SOLTU (e_value=1e-68) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G08570.1 (e_value=7e-61) | Symbols: | Pyruvate kinase family protein | chr5:2778433-2780300 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=2e-70) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00029337g0003.1 protein NbS00029337g0104.1 protein NbS00022041g0102.1 protein NbC24257043g0001.1 protein ; (*GB) gi|350536667|ref|NP_001234770.1| (e_value=1e-72) dihydrolipoamide dehydrogenase precursor [Solanum lycopersicum];; (*SWP) sp|P31023|DLDH_PEA (e_value=5e-70) Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2;; (*TAIR) AT3G17240.3 (e_value=9e-69) | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5890278-5892166 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=2e-75) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00006874g0001.1 protein NbS00004515g0002.1 protein ; (*GB) gi|255565409|ref|XP_002523695.1| (e_value=2e-34) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=7e-30) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=6e-31) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc11g069090.1.1 (e_value=3e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50759436-50762771 transcript_region:SL2.40ch11:50759436..50762771+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C0NDN3_AJECG); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00012978g0001.1 protein NbS00021195g0002.1 protein NbS00059962g0001.1 protein ; (*GB) gi|359497489|ref|XP_003635537.1| (e_value=2e-46) PREDICTED: LOW QUALITY PROTEIN: heat shock protein STI-like [Vitis vinifera];; (*SWP) sp|Q43468|STIP_SOYBN (e_value=2e-18) Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1;; (*TAIR) AT4G12400.1 (e_value=5e-38) | Symbols: Hop3 | stress-inducible protein, putative | chr4:7339024-7341239 REVERSE LENGTH=530;; (*ITAG) Solyc08g079170.2.1 (e_value=6e-32) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbS00013427g0001.1 protein ; (*GB) gi|33518898|gb|AAQ20089.1| (e_value=9e-28) S1 self-incompatibility locus-linked pollen G211 protein [Petunia integrifolia subsp. inflata];; (*TAIR) AT1G77680.1 (e_value=3e-19) | Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055;; (*ITAG) Solyc11g013030.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00012701g0002.1 protein NbS00012701g0003.1 protein NbS00000573g0002.1 protein NbS00021170g0005.1 protein NbC24183296g0001.1 protein ; (*GB) gi|357519575|ref|XP_003630076.1| (e_value=8e-52) U-box domain-containing protein [Medicago truncatula];; (*TAIR) AT2G22125.1 (e_value=2e-47) | Symbols: CSI1 | binding | chr2:9406793-9414223 FORWARD LENGTH=2150;; (*ITAG) Solyc04g054480.2.1 (e_value=6e-48) genomic_reference:SL2.40ch04 gene_region:51734576-51744000 transcript_region:SL2.40ch04:51734576..51744000+ go_terms:GO:0005488 functional_description:"C2 domain-containing protein-like (AHRD V1 *-*- Q67UI5_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00042852g0001.1 protein NbS00042852g0002.1 protein ; (*GB) gi|225426228|ref|XP_002263774.1| (e_value=2e-25) PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera];; (*SWP) sp|Q54ML1|NADE_DICDI (e_value=4e-18) Glutamine-dependent NAD(+) synthetase OS=Dictyostelium discoideum GN=nadsyn1 PE=3 SV=1;; (*TAIR) AT1G55090.1 (e_value=7e-28) | Symbols: | carbon-nitrogen hydrolase family protein | chr1:20554857-20558188 FORWARD LENGTH=725;; (*ITAG) Solyc08g082830.2.1 (e_value=9e-31) genomic_reference:SL2.40ch08 gene_region:62660064-62668736 transcript_region:SL2.40ch08:62660064..62668736- go_terms:GO:0042802 functional_description:"NH(3)-dependent NAD(+) synthetase (AHRD V1 ***- A1ZGC5_9BACT); contains Interpro domain(s) IPR014445 Glutamine-dependent NAD(+) synthetase, GAT region "; GO:0042802 NbS00016242g0001.1 protein ; (*GB) gi|225452990|ref|XP_002263011.1| (e_value=2e-54) PREDICTED: uncharacterized protein LOC100258654 [Vitis vinifera];; (*TAIR) AT1G08800.2 (e_value=3e-38) | Symbols: | Protein of unknown function, DUF593 | chr1:2813578-2817078 REVERSE LENGTH=1113;; (*ITAG) Solyc01g097040.2.1 (e_value=3e-85) genomic_reference:SL2.40ch01 gene_region:79776168-79780478 transcript_region:SL2.40ch01:79776168..79780478+ functional_description:"IFA-binding protein-like (AHRD V1 *-*- Q5ZC01_ORYSJ); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00001751g0104.1 protein NbS00032016g0001.1 protein NbS00053737g0001.1 protein NbS00025861g0004.1 protein NbC24022377g0001.1 protein ; (*GB) gi|224106692|ref|XP_002314250.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRM9|ALMT8_ARATH (e_value=9e-16) Aluminum-activated malate transporter 8 OS=Arabidopsis thaliana GN=ALMT8 PE=3 SV=1;; (*TAIR) AT3G11680.1 (e_value=7e-17) | Symbols: | Aluminium activated malate transporter family protein | chr3:3686995-3689329 REVERSE LENGTH=488;; (*ITAG) Solyc10g081890.1.1 (e_value=5e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62152624-62155998 transcript_region:SL2.40ch10:62152624..62155998+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00037632g0004.1 protein ; (*ITAG) Solyc02g080900.2.1 (e_value=1e-17) genomic_reference:SL2.40ch02 gene_region:39586431-39587905 transcript_region:SL2.40ch02:39586431..39587905+ functional_description:"Genomic DNA chromosome 5 TAC clone K6A12 (AHRD V1 **-- Q9FGR6_ARATH)"; NbS00019692g0001.1 protein ; (*ITAG) Solyc00g007300.2.1 (e_value=2e-16) genomic_reference:SL2.40ch00 gene_region:6935594-6938269 transcript_region:SL2.40ch00:6935594..6938269- go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00012987g0002.1 protein ; (*GB) gi|147810501|emb|CAN60890.1| (e_value=3e-15) hypothetical protein VITISV_011880 [Vitis vinifera]; NbS00007228g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025475g0004.1 protein ; (*GB) gi|359489894|ref|XP_002274331.2| (e_value=2e-78) PREDICTED: E3 ubiquitin-protein ligase synoviolin-like [Vitis vinifera];; (*SWP) sp|Q95SP2|HRD1_DROME (e_value=3e-29) E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1;; (*TAIR) AT1G65040.2 (e_value=3e-76) | Symbols: | RING/U-box superfamily protein | chr1:24160105-24163365 REVERSE LENGTH=460;; (*ITAG) Solyc06g072790.2.1 (e_value=4e-108) genomic_reference:SL2.40ch06 gene_region:41277400-41284217 transcript_region:SL2.40ch06:41277400..41284217+ go_terms:GO:0005515,GO:0016881 functional_description:"RING finger protein (AHRD V1 **-- A1C428_ASPCL); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005515,GO:0016881 NbS00037914g0001.1 protein NbS00037914g0002.1 protein NbC23592397g0001.1 protein ; (*GB) gi|224105179|ref|XP_002313716.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|O65351|SUBL_ARATH (e_value=2e-21) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=2e-42) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=6e-48) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00011576g0001.1 protein NbS00002454g0006.1 protein NbS00008114g0001.1 protein NbS00024151g0103.1 protein NbC25096554g0001.1 protein ; (*GB) gi|359473390|ref|XP_002268680.2| (e_value=2e-134) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=7e-103) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=5e-104) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc03g118280.1.1 (e_value=1e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003717g0002.1 protein NbC23135879g0001.1 protein ; (*GB) gi|297737995|emb|CBI27196.3| (e_value=4e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G79570.1 (e_value=5e-28) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:29932856-29937540 REVERSE LENGTH=1248;; (*ITAG) Solyc02g031860.2.1 (e_value=4e-34) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00009050g0003.1 protein NbS00013338g0001.1 protein NbS00013338g0002.1 protein NbS00015469g0002.1 protein ; (*ITAG) Solyc06g009240.2.1 (e_value=5e-22) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00005889g0001.1 protein NbS00018922g0007.1 protein NbS00020544g0001.1 protein ; (*GB) gi|224147601|ref|XP_002336508.1| (e_value=1e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZP56|DRP4A_ARATH (e_value=4e-16) Putative dynamin-related protein 4A OS=Arabidopsis thaliana GN=DRP4A PE=5 SV=1;; (*TAIR) AT1G60530.1 (e_value=3e-17) | Symbols: DRP4A | Dynamin related protein 4A | chr1:22299797-22301167 FORWARD LENGTH=301;; (*ITAG) Solyc11g069980.1.1 (e_value=3e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00041322g0001.1 protein ; (*ITAG) Solyc05g006680.2.1 (e_value=4e-22) genomic_reference:SL2.40ch05 gene_region:1357171-1361457 transcript_region:SL2.40ch05:1357171..1361457+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00032504g0001.1 protein ; (*GB) gi|225441748|ref|XP_002277555.1| (e_value=1e-39) PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis vinifera];; (*SWP) sp|P15398|RPA1_SCHPO (e_value=2e-29) DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2;; (*TAIR) AT3G57660.1 (e_value=4e-38) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=2e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00010915g0001.1 protein ; (*GB) gi|297737174|emb|CBI26375.3| (e_value=3e-41) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G43600.1 (e_value=7e-37) | Symbols: ATAAH-2, UAH | ureidoglycolate amidohydrolase | chr5:17512651-17515280 FORWARD LENGTH=476;; (*ITAG) Solyc09g083410.2.1 (e_value=1e-54) genomic_reference:SL2.40ch09 gene_region:64466144-64472295 transcript_region:SL2.40ch09:64466144..64472295- go_terms:GO:0004848,GO:0047652 functional_description:"Amidase hydantoinase/carbamoylase family protein expressed (AHRD V1 **-- Q2QMN7_ORYSJ); contains Interpro domain(s) IPR010158 Amidase, hydantoinase/carbamoylase "; GO:0004848,GO:0047652 NbC23837422g0001.1 protein ; (*GB) gi|6759603|emb|CAB69826.1| (e_value=3e-40) putative plasma membrane H+ ATPase [Prunus persica];; (*SWP) sp|Q9SU58|PMA4_ARATH (e_value=3e-37) ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2;; (*TAIR) AT3G47950.1 (e_value=2e-38) | Symbols: AHA4, HA4 | H(+)-ATPase 4 | chr3:17693015-17697801 FORWARD LENGTH=960;; (*ITAG) Solyc03g113400.2.1 (e_value=3e-38) genomic_reference:SL2.40ch03 gene_region:57608874-57615656 transcript_region:SL2.40ch03:57608874..57615656+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00060777g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00012228g0002.1 protein NbS00031545g0003.1 protein NbS00027741g0006.1 protein NbS00045980g0001.1 protein NbS00025210g0005.1 protein ; (*ITAG) Solyc01g104830.2.1 (e_value=5e-20) genomic_reference:SL2.40ch01 gene_region:84929571-84930370 transcript_region:SL2.40ch01:84929571..84930370+ functional_description:"Nodulin-related integral membrane protein DUF125 (AHRD V1 *-*- C7JBI4_ACEP3); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00002118g0001.1 protein NbS00009865g0003.1 protein NbS00014656g0001.1 protein NbS00014656g0002.1 protein NbS00015118g0005.1 protein ; (*GB) gi|40809925|dbj|BAD07294.1| (e_value=3e-69) prolyl 4-hydroxylase [Nicotiana tabacum];; (*SWP) sp|P16924|P4HA1_CHICK (e_value=7e-13) Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1;; (*TAIR) AT4G33910.1 (e_value=5e-67) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:16256943-16258614 REVERSE LENGTH=288;; (*ITAG) Solyc02g092710.2.1 (e_value=5e-80) genomic_reference:SL2.40ch02 gene_region:48279731-48285461 transcript_region:SL2.40ch02:48279731..48285461+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TYA6_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00000789g0001.1 protein NbS00020350g0001.1 protein NbS00012313g0002.1 protein NbS00022764g0005.1 protein NbS00004112g0001.1 protein NbS00038094g0002.1 protein ; (*ITAG) Solyc01g103660.2.1 (e_value=7e-26) genomic_reference:SL2.40ch01 gene_region:83970532-83977332 transcript_region:SL2.40ch01:83970532..83977332+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold (AHRD V1 *--- B0KN71_PSEPG)"; GO:0003824 NbS00006031g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-20) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00007846g0005.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=2e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00059964g0001.1 protein NbS00025002g0001.1 protein NbS00025383g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-13) hypothetical protein [Cucumis melo subsp. melo]; NbS00037971g0002.1 protein NbS00037837g0001.1 protein ; (*GB) gi|297745216|emb|CBI40296.3| (e_value=1e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=1e-35) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=1e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094220.2.1 (e_value=5e-41) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00052667g0001.1 protein NbS00052667g0002.1 protein NbS00052667g0003.1 protein ; (*ITAG) Solyc01g066890.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00020127g0003.1 protein NbS00000904g0001.1 protein NbC25140862g0001.1 protein ; (*GB) gi|3513738|gb|AAC33954.1| (e_value=6e-25) similar to the GDSL family of lipolytic enzymes [Arabidopsis thaliana];; (*TAIR) AT4G10950.1 (e_value=2e-27) | Symbols: | SGNH hydrolase-type esterase superfamily protein | chr4:6711502-6713512 REVERSE LENGTH=400;; (*ITAG) Solyc08g082500.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62439586-62440675 transcript_region:SL2.40ch08:62439586..62440675- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g33811 (AHRD V1 ***- GDL17_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00026014g0001.1 protein NbS00009872g0001.1 protein NbS00037086g0002.1 protein ; (*ITAG) Solyc12g038770.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:36350447-36351295 transcript_region:SL2.40ch12:36350447..36351295- functional_description:"N-6 Adenine-specific DNA methylase (AHRD V1 *-*- Q1STQ1_MEDTR)"; NbS00042741g0001.1 protein NbS00019364g0001.1 protein NbS00019364g0004.1 protein NbS00007953g0002.1 protein NbS00032511g0001.1 protein NbS00036354g0001.1 protein ; (*TAIR) AT2G32600.1 (e_value=2e-16) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:13833779-13835525 REVERSE LENGTH=277;; (*ITAG) Solyc09g008470.2.1 (e_value=8e-17) genomic_reference:SL2.40ch09 gene_region:1916797-1921294 transcript_region:SL2.40ch09:1916797..1921294+ go_terms:GO:0005634,GO:0008270 functional_description:"Splicing factor 3a subunit 2 (AHRD V1 ***- D8U746_VOLCA); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00045544g0001.1 protein ; (*GB) gi|33329200|gb|AAQ10000.1| (e_value=9e-23) putative fructokinase 2 [Petunia integrifolia subsp. inflata];; (*SWP) sp|P37829|SCRK_SOLTU (e_value=4e-21) Fructokinase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G06020.1 (e_value=2e-18) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:1824548-1826101 FORWARD LENGTH=345;; (*ITAG) Solyc06g073190.2.1 (e_value=4e-22) genomic_reference:SL2.40ch06 gene_region:41483219-41485991 transcript_region:SL2.40ch06:41483219..41485991- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase-like (AHRD V1 **-* Q307Z3_SOLTU); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0008865,GO:0008959 NbS00001968g0002.1 protein NbS00002494g0006.1 protein NbS00034251g0001.1 protein NbS00017819g0004.1 protein NbS00045256g0002.1 protein NbS00023789g0001.1 protein NbS00036902g0001.1 protein NbS00021714g0001.1 protein NbS00021817g0001.1 protein NbC23923731g0001.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=4e-47) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*SWP) sp|Q1XDM0|ODPA_PORYE (e_value=1e-39) Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1;; (*TAIR) AT1G01090.1 (e_value=2e-44) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009410.1.1 (e_value=8e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2687666-2690826 transcript_region:SL2.40ch12:2687666..2690826+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 **** Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0004739 NbS00000414g0001.1 protein NbS00014865g0001.1 protein NbS00014865g0002.1 protein NbS00014865g0004.1 protein NbS00014865g0005.1 protein NbS00034121g0001.1 protein ; (*GB) gi|5931765|emb|CAB56619.1| (e_value=1e-72) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=2e-68) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.3 (e_value=1e-67) | Symbols: DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=604;; (*ITAG) Solyc01g095970.2.1 (e_value=2e-76) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00034121g0002.1 protein ; (*GB) gi|5931765|emb|CAB56619.1| (e_value=6e-85) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=2e-84) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.2 (e_value=2e-84) | Symbols: ADL1, ADL1A, AG68, DRP1A, DL1 | dynamin-like protein | chr5:16821564-16824536 REVERSE LENGTH=429;; (*ITAG) Solyc05g050600.2.1 (e_value=4e-91) genomic_reference:SL2.40ch05 gene_region:59898851-59909884 transcript_region:SL2.40ch05:59898851..59909884+ go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q5XGH8_XENTR); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00008548g0001.1 protein NbS00001852g0001.1 protein NbS00030932g0002.1 protein NbS00030932g0003.1 protein NbS00024329g0001.1 protein ; (*GB) gi|14423763|sp|Q9M7J4.1|MFP1_TOBAC (e_value=4e-31) RecName: Full=MAR-binding filament-like protein 1-1;; (*SWP) sp|Q9M7J4|MFP1_TOBAC (e_value=1e-32) MAR-binding filament-like protein 1-1 OS=Nicotiana tabacum GN=MFP1-1 PE=2 SV=1;; (*ITAG) Solyc03g120230.2.1 (e_value=3e-26) genomic_reference:SL2.40ch03 gene_region:62741263-62746412 transcript_region:SL2.40ch03:62741263..62746412+ go_terms:GO:0003677 functional_description:"MAR-binding filament-like protein 1 (AHRD V1 **** MFP1_SOLLC); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0003677 NbS00005238g0001.1 protein ; (*GB) gi|147771521|emb|CAN75691.1| (e_value=2e-50) hypothetical protein VITISV_038532 [Vitis vinifera];; (*TAIR) AT5G42760.2 (e_value=3e-46) | Symbols: | Leucine carboxyl methyltransferase | chr5:17148965-17150364 FORWARD LENGTH=364; NbS00005238g0002.1 protein NbS00021956g0001.1 protein NbS00031521g0001.1 protein NbS00049681g0001.1 protein NbC23985755g0001.1 protein ; (*GB) gi|229368448|gb|ACQ59090.1| (e_value=2e-58) BTB/POZ protein [Nicotiana benthamiana];; (*SWP) sp|Q9FPW6|POB1_ARATH (e_value=8e-55) BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana GN=POB1 PE=2 SV=2;; (*TAIR) AT3G61600.1 (e_value=6e-56) | Symbols: ATPOB1, POB1 | POZ/BTB containin G-protein 1 | chr3:22795704-22797953 FORWARD LENGTH=561;; (*ITAG) Solyc10g011790.2.1 (e_value=5e-57) genomic_reference:SL2.40ch10 gene_region:4023426-4028217 transcript_region:SL2.40ch10:4023426..4028217- go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00038969g0001.1 protein ; (*ITAG) Solyc12g006270.1.1 (e_value=5e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:783430-787716 transcript_region:SL2.40ch12:783430..787716- functional_description:"Dentin sialophosphoprotein-like protein (AHRD V1 *-*- Q8S7I6_ORYSJ)"; NbS00015703g0001.1 protein ; (*TAIR) AT4G34040.1 (e_value=1e-11) | Symbols: | RING/U-box superfamily protein | chr4:16304638-16307503 REVERSE LENGTH=666; NbS00007650g0101.1 protein NbS00002665g0106.1 protein NbS00036522g0001.1 protein NbS00009090g0004.1 protein NbS00026071g0001.1 protein ; (*GB) gi|225470958|ref|XP_002264499.1| (e_value=2e-14) PREDICTED: aluminum-activated malate transporter 10 [Vitis vinifera];; (*SWP) sp|O23086|ALMTA_ARATH (e_value=6e-14) Aluminum-activated malate transporter 10 OS=Arabidopsis thaliana GN=ALMT10 PE=2 SV=2;; (*TAIR) AT4G00910.1 (e_value=5e-15) | Symbols: | Aluminium activated malate transporter family protein | chr4:389370-391287 REVERSE LENGTH=497;; (*ITAG) Solyc01g096140.2.1 (e_value=5e-32) genomic_reference:SL2.40ch01 gene_region:79013512-79015884 transcript_region:SL2.40ch01:79013512..79015884+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- C6EP55_SECCE); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00001339g0003.1 protein NbS00033881g0001.1 protein ; (*GB) gi|225425821|ref|XP_002264828.1| (e_value=5e-35) PREDICTED: proteasome subunit beta type-5 [Vitis vinifera];; (*SWP) sp|O24361|PSB5_SPIOL (e_value=3e-35) Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT3G26340.1 (e_value=6e-35) | Symbols: | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | chr3:9650600-9652572 REVERSE LENGTH=273;; (*ITAG) Solyc05g056160.2.1 (e_value=4e-48) genomic_reference:SL2.40ch05 gene_region:64697997-64702312 transcript_region:SL2.40ch05:64697997..64702312- go_terms:GO:0005515,GO:0004175 functional_description:"Proteasome subunit beta type (AHRD V1 ***- C6TLJ9_SOYBN); contains Interpro domain(s) IPR000243 Peptidase T1A, proteasome beta-subunit "; GO:0005515,GO:0004175 NbS00025937g0002.1 protein ; (*GB) gi|255569424|ref|XP_002525679.1| (e_value=4e-173) gd2b, putative [Ricinus communis];; (*SWP) sp|Q6BIV4|PNS1_DEBHA (e_value=9e-17) Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2;; (*TAIR) AT3G04440.1 (e_value=9e-148) | Symbols: | Plasma-membrane choline transporter family protein | chr3:1178718-1180537 FORWARD LENGTH=482;; (*ITAG) Solyc01g087890.2.1 (e_value=6e-69) genomic_reference:SL2.40ch01 gene_region:74519205-74522762 transcript_region:SL2.40ch01:74519205..74522762+ functional_description:"Choline transporter-like protein 5-A (Fragment) (AHRD V1 *--- CTL5A_DANRE); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00005412g0001.1 protein NbS00008248g0003.1 protein ; (*GB) gi|166165119|gb|ABY83921.1| (e_value=6e-48) cytochrome oxidase subunit 1 [Petrea volubilis];; (*SWP) sp|P68539|COX1_WHEAT (e_value=1e-45) Cytochrome c oxidase subunit 1 OS=Triticum aestivum GN=COX1 PE=3 SV=1;; (*ITAG) ATMG01360.1 (e_value=6e-45) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=4e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbC24203551g0001.1 protein ; (*ITAG) Solyc10g079530.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60385164-60386750 transcript_region:SL2.40ch10:60385164..60386750+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00030088g0001.1 protein ; (*GB) gi|297739897|emb|CBI30079.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g099580.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81533868-81537652 transcript_region:SL2.40ch01:81533868..81537652- functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 *-*- B6TNA6_MAIZE); contains Interpro domain(s) IPR011424 C1-like "; NbS00030088g0002.1 protein NbS00021507g0001.1 protein ; (*GB) gi|357497745|ref|XP_003619161.1| (e_value=2e-13) ATPase subunit [Medicago truncatula];; (*ITAG) ATMG00640.1 (e_value=2e-14) | Symbols: ORF25 | hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding | chrM:188084-188662 REVERSE LENGTH=192; NbS00021507g0003.1 protein NbS00004251g0001.1 protein NbS00038236g0004.1 protein NbS00005147g0001.1 protein NbS00027258g0101.1 protein NbS00027258g0102.1 protein NbS00015038g0002.1 protein ; (*ITAG) Solyc09g065280.2.1 (e_value=1e-18) genomic_reference:SL2.40ch09 gene_region:58944289-58948110 transcript_region:SL2.40ch09:58944289..58948110+ go_terms:GO:0005515,GO:0019870 functional_description:"Pre-mRNA-splicing factor 18 (AHRD V1 ***- C1BJD5_OSMMO); contains Interpro domain(s) IPR004098 Prp18 "; GO:0005515,GO:0019870 NbS00012231g0005.1 protein NbC24700386g0001.1 protein ; (*GB) gi|147861778|emb|CAN78916.1| (e_value=1e-18) hypothetical protein VITISV_032223 [Vitis vinifera];; (*ITAG) Solyc12g099720.1.1 (e_value=2e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbC23821162g0001.1 protein ; (*GB) gi|133711805|gb|ABO36623.1| (e_value=3e-41) putative RNA-binding protein [Solanum lycopersicum];; (*SWP) sp|Q6Z358|C3H49_ORYSJ (e_value=8e-38) Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa subsp. japonica GN=Os07g0281000 PE=2 SV=1;; (*TAIR) AT1G07360.1 (e_value=2e-32) | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr1:2260562-2262795 REVERSE LENGTH=481;; (*ITAG) Solyc10g079190.1.1 (e_value=5e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60106005-60110030 transcript_region:SL2.40ch10:60106005..60110030- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"Pre-mRNA splicing factor (AHRD V1 *-*- C4QX20_PICPG); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00008599g0003.1 protein NbS00008599g0004.1 protein NbS00008599g0005.1 protein NbS00004580g0002.1 protein ; (*GB) gi|255563546|ref|XP_002522775.1| (e_value=1e-68) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LVQ5|PP432_ARATH (e_value=7e-60) Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2;; (*TAIR) AT5G55840.1 (e_value=4e-61) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22598038-22601688 FORWARD LENGTH=1136;; (*ITAG) Solyc01g108410.1.1 (e_value=6e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007404g0003.1 protein ; (*GB) gi|224131984|ref|XP_002328156.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*TAIR) AT2G28390.1 (e_value=9e-75) | Symbols: | SAND family protein | chr2:12139836-12143375 REVERSE LENGTH=607;; (*ITAG) Solyc03g115810.2.1 (e_value=5e-105) genomic_reference:SL2.40ch03 gene_region:59451563-59462697 transcript_region:SL2.40ch03:59451563..59462697+ functional_description:"Vacuolar fusion protein mon1 (AHRD V1 ***- C5JTA2_AJEDS); contains Interpro domain(s) IPR004353 Vacuolar fusion protein MON1 "; NbS00036799g0001.1 protein ; (*GB) gi|225443508|ref|XP_002276381.1| (e_value=8e-65) PREDICTED: nudix hydrolase 15, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=3e-58) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.5 (e_value=3e-62) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110135-10111607 REVERSE LENGTH=293;; (*ITAG) Solyc10g008770.2.1 (e_value=1e-75) genomic_reference:SL2.40ch10 gene_region:2835103-2839953 transcript_region:SL2.40ch10:2835103..2839953- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00027066g0003.1 protein ; (*GB) gi|332322201|emb|CCA66222.1| (e_value=5e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00029737g0001.1 protein ; (*GB) gi|224121002|ref|XP_002330879.1| (e_value=7e-131) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-21) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT2G44500.1 (e_value=6e-121) | Symbols: | O-fucosyltransferase family protein | chr2:18374447-18376435 FORWARD LENGTH=573;; (*ITAG) Solyc10g045420.1.1 (e_value=4e-143) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28841570-28844574 transcript_region:SL2.40ch10:28841570..28844574+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00049345g0001.1 protein NbS00023688g0001.1 protein NbS00014969g0003.1 protein ; (*GB) gi|15232018|ref|NP_187525.1| (e_value=9e-20) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G09130.1 (e_value=2e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42786.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2799312-2800505 FORWARD LENGTH=397; NbS00020025g0102.1 protein NbS00008974g0001.1 protein NbS00048292g0001.1 protein NbC23744801g0001.1 protein ; (*GB) gi|357511743|ref|XP_003626160.1| (e_value=9e-29) Protein transport protein Sec24-like protein [Medicago truncatula];; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=1e-29) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2;; (*TAIR) AT3G07100.1 (e_value=8e-31) | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein transport family protein | chr3:2245689-2250077 REVERSE LENGTH=1038;; (*ITAG) Solyc02g082220.2.1 (e_value=2e-33) genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00006742g0002.1 protein NbS00016178g0001.1 protein NbS00007142g0001.1 protein NbS00007603g0001.1 protein NbS00007603g0002.1 protein NbS00031912g0001.1 protein NbS00024341g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-19) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00031655g0004.1 protein NbC24519407g0001.1 protein ; (*GB) gi|356522149|ref|XP_003529711.1| (e_value=9e-34) PREDICTED: uncharacterized protein LOC100819537 [Glycine max];; (*TAIR) AT1G79640.1 (e_value=2e-26) | Symbols: | Protein kinase superfamily protein | chr1:29966913-29971387 REVERSE LENGTH=687;; (*ITAG) Solyc03g117790.1.1 (e_value=5e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00044590g0001.1 protein NbS00005008g0001.1 protein NbS00005008g0005.1 protein NbC23174827g0001.1 protein ; (*GB) gi|350535967|ref|NP_001233967.1| (e_value=2e-26) V-type proton ATPase 16 kDa proteolipid subunit [Solanum lycopersicum];; (*SWP) sp|O24011|VATL_SOLLC (e_value=6e-28) V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G19910.1 (e_value=2e-28) | Symbols: AVA-P2, AVA-2PE, ATVHA-C2 | ATPase, F0/V0 complex, subunit C protein | chr1:6913317-6914322 FORWARD LENGTH=165;; (*ITAG) Solyc02g084360.2.1 (e_value=3e-29) genomic_reference:SL2.40ch02 gene_region:42055235-42057826 transcript_region:SL2.40ch02:42055235..42057826+ go_terms:GO:0046961 functional_description:"V-type proton ATPase 16 kDa proteolipid subunit c2 (AHRD V1 **** VATL2_ARATH); contains Interpro domain(s) IPR011555 ATPase, V0 complex, proteolipid subunit C, eukaryotic "; GO:0046961 NbS00047845g0003.1 protein ; (*GB) gi|224087758|ref|XP_002308222.1| (e_value=5e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=1e-15) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT2G01060.1 (e_value=2e-22) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:73456-74902 REVERSE LENGTH=286;; (*ITAG) Solyc09g005370.1.1 (e_value=6e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:286313-287329 transcript_region:SL2.40ch09:286313..287329+ go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *--- D7LQZ5_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbC23666742g0001.1 protein ; (*GB) gi|61697115|gb|AAX53163.1| (e_value=8e-52) chloroplast photosynthetic oxygen-evolving protein 33 kDa subunit [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=3e-53) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=1e-49) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g065400.2.1 (e_value=2e-53) genomic_reference:SL2.40ch02 gene_region:31151784-31154764 transcript_region:SL2.40ch02:31151784..31154764+ go_terms:GO:0008266,GO:0005515 functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "; GO:0008266,GO:0005515 NbS00002570g0001.1 protein NbS00002570g0101.1 protein NbS00048469g0001.1 protein NbS00033134g0001.1 protein NbS00011309g0003.1 protein NbS00015308g0002.1 protein NbS00015308g0003.1 protein NbS00037935g0002.1 protein NbS00053387g0001.1 protein ; (*GB) gi|255561012|ref|XP_002521518.1| (e_value=1e-44) WD-repeat protein, putative [Ricinus communis];; (*TAIR) AT4G18905.1 (e_value=1e-35) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:10360234-10362991 FORWARD LENGTH=494;; (*ITAG) Solyc04g005330.2.1 (e_value=4e-56) genomic_reference:SL2.40ch04 gene_region:241155-247975 transcript_region:SL2.40ch04:241155..247975- go_terms:GO:0005515 functional_description:"Periodic tryptophan protein 1 homolog (AHRD V1 **-- C1BVG9_9MAXI); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515 NbS00022536g0002.1 protein NbS00011691g0006.1 protein NbC23567427g0001.1 protein ; (*GB) gi|297741419|emb|CBI32550.3| (e_value=1e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SYZ7|U496A_ARATH (e_value=1e-27) UPF0496 protein At4g34320 OS=Arabidopsis thaliana GN=At4g34320 PE=1 SV=1;; (*TAIR) AT4G34320.1 (e_value=1e-28) | Symbols: | Protein of unknown function (DUF677) | chr4:16422436-16423824 FORWARD LENGTH=374;; (*ITAG) Solyc01g109380.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:88111929-88113295 transcript_region:SL2.40ch01:88111929..88113295- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007749 Protein of unknown function DUF677 "; NbS00027892g0002.1 protein NbS00024957g0002.1 protein NbS00010478g0003.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=4e-15) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00010478g0004.1 protein NbS00039935g0001.1 protein NbS00039935g0002.1 protein NbS00019488g0001.1 protein NbS00017829g0004.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=5e-19) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc03g080090.2.1 (e_value=5e-15) genomic_reference:SL2.40ch03 gene_region:45541347-45546345 transcript_region:SL2.40ch03:45541347..45546345+ go_terms:GO:0003713,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003713,GO:0003700 NbS00017829g0006.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g012310.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10454496-10455623 transcript_region:SL2.40ch00:10454496..10455623- go_terms:GO:0006278 functional_description:"Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) (AHRD V1 **-- PO21_NASVI); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; GO:0006278 NbS00003431g0002.1 protein NbS00003431g0103.1 protein NbS00033630g0001.1 protein NbS00033630g0002.1 protein ; (*GB) gi|224133722|ref|XP_002327664.1| (e_value=2e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g080320.1.1 (e_value=6e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:62143011-62144084 transcript_region:SL2.40ch04:62143011..62144084+ functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00010762g0001.1 protein NbS00030153g0001.1 protein NbS00031414g0001.1 protein NbS00012063g0001.1 protein NbS00012063g0004.1 protein NbS00031819g0001.1 protein NbS00014364g0009.1 protein NbS00015216g0001.1 protein ; (*SWP) sp|O48947|CESA2_ARATH (e_value=3e-13) Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1;; (*TAIR) AT4G39350.1 (e_value=3e-14) | Symbols: CESA2, ATH-A, ATCESA2 | cellulose synthase A2 | chr4:18297078-18301890 FORWARD LENGTH=1084;; (*ITAG) Solyc04g071650.2.1 (e_value=3e-15) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00025290g0001.1 protein NbS00004261g0001.1 protein NbS00041967g0001.1 protein NbS00012793g0101.1 protein NbC25790890g0001.1 protein ; (*GB) gi|147805930|emb|CAN74401.1| (e_value=2e-40) hypothetical protein VITISV_043630 [Vitis vinifera];; (*TAIR) AT1G51350.1 (e_value=2e-31) | Symbols: | ARM repeat superfamily protein | chr1:19035851-19038738 FORWARD LENGTH=666;; (*ITAG) Solyc11g065750.1.1 (e_value=2e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48428800-48442402 transcript_region:SL2.40ch11:48428800..48442402- go_terms:GO:0005488 functional_description:"Armadillo repeat-containing protein (AHRD V1 *-*- Q55D97_DICDI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00016072g0001.1 protein NbS00016072g0002.1 protein NbS00026711g0002.1 protein NbS00026711g0003.1 protein NbS00000193g0005.1 protein NbS00005996g0002.1 protein NbS00024744g0001.1 protein ; (*GB) gi|255567104|ref|XP_002524534.1| (e_value=2e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G33410.1 (e_value=8e-60) | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504;; (*ITAG) Solyc01g102540.2.1 (e_value=6e-113) genomic_reference:SL2.40ch01 gene_region:83081913-83093458 transcript_region:SL2.40ch01:83081913..83093458- go_terms:GO:0003993 functional_description:"Nucleoporin (AHRD V1 *-*- C0KG86_DROSI)"; GO:0003993 NbS00030971g0003.1 protein NbC23388304g0001.1 protein ; (*GB) gi|356507927|ref|XP_003522714.1| (e_value=6e-32) PREDICTED: uncharacterized protein LOC100814675 [Glycine max];; (*TAIR) AT2G25800.1 (e_value=7e-28) | Symbols: | Protein of unknown function (DUF810) | chr2:11006138-11009728 REVERSE LENGTH=987;; (*ITAG) Solyc08g066600.2.1 (e_value=3e-41) genomic_reference:SL2.40ch08 gene_region:52549459-52556364 transcript_region:SL2.40ch08:52549459..52556364- functional_description:"Homology to unknown gene (AHRD V1 **-- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00014318g0001.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=1e-42) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=1e-38) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=1e-39) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=1e-50) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00002721g0001.1 protein NbS00007133g0002.1 protein NbS00036997g0001.1 protein NbC25049237g0001.1 protein ; (*GB) gi|255565935|ref|XP_002523956.1| (e_value=2e-23) RAB6-interacting protein, putative [Ricinus communis];; (*ITAG) Solyc08g077680.2.1 (e_value=4e-79) genomic_reference:SL2.40ch08 gene_region:58750403-58754684 transcript_region:SL2.40ch08:58750403..58754684- functional_description:"Kinase interacting protein 1-like (AHRD V1 *-*- Q9AS78_ORYSJ); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00025893g0002.1 protein NbS00012324g0001.1 protein ; (*GB) gi|147787280|emb|CAN71414.1| (e_value=1e-49) hypothetical protein VITISV_029216 [Vitis vinifera];; (*SWP) sp|Q9C952|CPSF3_ARATH (e_value=1e-49) Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1;; (*TAIR) AT1G61010.3 (e_value=9e-51) | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693;; (*ITAG) Solyc07g049480.2.1 (e_value=1e-52) genomic_reference:SL2.40ch07 gene_region:57077978-57086643 transcript_region:SL2.40ch07:57077978..57086643+ go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B5X1A0_SALSA); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00027776g0001.1 protein ; (*ITAG) Solyc12g042510.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43293148-43297685 transcript_region:SL2.40ch12:43293148..43297685- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00019985g0002.1 protein NbC24863206g0001.1 protein ; (*GB) gi|147777182|emb|CAN63285.1| (e_value=4e-29) hypothetical protein VITISV_017507 [Vitis vinifera];; (*SWP) sp|Q08276|HSP7M_SOLTU (e_value=3e-27) Heat shock 70 kDa protein, mitochondrial OS=Solanum tuberosum GN=HSP68 PE=2 SV=1;; (*TAIR) AT4G37910.1 (e_value=1e-26) | Symbols: mtHsc70-1 | mitochondrial heat shock protein 70-1 | chr4:17825368-17828099 REVERSE LENGTH=682;; (*ITAG) Solyc01g106260.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:85976768-85981140 transcript_region:SL2.40ch01:85976768..85981140+ go_terms:GO:0005524,GO:0006457 functional_description:"Chaperone DnaK (AHRD V1 ***- A2Q199_MEDTR); contains Interpro domain(s) IPR012725 Chaperone DnaK "; GO:0005524,GO:0006457 NbS00035616g0001.1 protein NbS00003858g0001.1 protein NbS00048214g0002.1 protein NbS00048214g0003.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-25) hypothetical protein [Nicotiana tabacum]; NbS00023412g0002.1 protein ; (*GB) gi|302142265|emb|CBI19468.3| (e_value=1e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L9J9|CAES_ARATH (e_value=7e-15) Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2;; (*TAIR) AT3G53010.1 (e_value=3e-16) | Symbols: | Domain of unknown function (DUF303) | chr3:19656603-19657928 REVERSE LENGTH=297;; (*ITAG) Solyc12g057020.1.1 (e_value=5e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48457119-48458526 transcript_region:SL2.40ch12:48457119..48458526+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D0TLQ4_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00004196g0001.1 protein NbS00009593g0001.1 protein NbS00012365g0006.1 protein NbS00014958g0003.1 protein NbC24834868g0001.1 protein ; (*GB) gi|224110452|ref|XP_002315524.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g080620.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:72360030-72370043 transcript_region:SL2.40ch01:72360030..72370043+ go_terms:GO:0005515 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_HUMAN); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00057646g0001.1 protein ; (*GB) gi|341606675|gb|AEK83440.1| (e_value=1e-33) At5g60700-like protein [Capsella grandiflora];; (*TAIR) AT5G60700.1 (e_value=1e-34) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=6e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00018049g0003.1 protein NbS00002128g0001.1 protein NbC25582537g0001.1 protein ; (*GB) gi|297834582|ref|XP_002885173.1| (e_value=4e-58) hypothetical protein ARALYDRAFT_898013 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LIB6|COBL8_ARATH (e_value=2e-58) COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1;; (*TAIR) AT3G16860.1 (e_value=1e-59) | Symbols: COBL8 | COBRA-like protein 8 precursor | chr3:5759643-5762104 REVERSE LENGTH=653;; (*ITAG) Solyc09g075540.1.1 (e_value=1e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62731615-62733737 transcript_region:SL2.40ch09:62731615..62733737- go_terms:GO:0030246 functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; GO:0030246 NbS00021483g0001.1 protein ; (*ITAG) Solyc04g058030.1.1 (e_value=1e-48) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54305390-54307553 transcript_region:SL2.40ch04:54305390..54307553+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 **-- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbC23581370g0001.1 protein ; (*GB) gi|3513758|gb|AAC33966.1| (e_value=9e-37) phenylalanine ammonia-lyase [Capsicum chinense];; (*SWP) sp|P25872|PAL1_TOBAC (e_value=1e-37) Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1;; (*TAIR) AT3G10340.1 (e_value=4e-31) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc09g007920.2.1 (e_value=5e-38) genomic_reference:SL2.40ch09 gene_region:1435451-1440492 transcript_region:SL2.40ch09:1435451..1440492+ go_terms:GO:0004397,GO:0045548 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 **** B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0004397,GO:0045548 NbS00005460g0001.1 protein NbS00003592g0001.1 protein NbS00034332g0003.1 protein NbS00032046g0001.1 protein ; (*GB) gi|225448948|ref|XP_002268646.1| (e_value=2e-24) PREDICTED: 50S ribosomal protein L15 [Vitis vinifera];; (*TAIR) AT5G64670.1 (e_value=1e-21) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr5:25852535-25853880 REVERSE LENGTH=281;; (*ITAG) Solyc02g081310.2.1 (e_value=3e-46) genomic_reference:SL2.40ch02 gene_region:39901020-39904709 transcript_region:SL2.40ch02:39901020..39904709- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L15 (AHRD V1 ***- D0P1Y0_PHYIN); contains Interpro domain(s) IPR005749 Ribosomal protein L15, bacterial-type "; GO:0005840,GO:0015934 NbS00034468g0001.1 protein ; (*GB) gi|10177111|dbj|BAB10401.1| (e_value=2e-15) unnamed protein product [Arabidopsis thaliana];; (*TAIR) AT5G65960.1 (e_value=2e-17) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=3e-19) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00024637g0002.1 protein NbS00030186g0002.1 protein NbC25228197g0001.1 protein ; (*GB) gi|296084463|emb|CBI25022.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WMY5|PP365_ARATH (e_value=9e-39) Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1;; (*TAIR) AT5G04810.1 (e_value=7e-40) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:1390049-1393760 FORWARD LENGTH=952;; (*ITAG) Solyc11g006680.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1285136-1294394 transcript_region:SL2.40ch11:1285136..1294394- go_terms:GO:0003676,GO:0000166 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LY59_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00010087g0001.1 protein NbS00003065g0001.1 protein NbS00011927g0003.1 protein ; (*GB) gi|255577428|ref|XP_002529593.1| (e_value=2e-65) Serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|Q56WF8|SCP48_ARATH (e_value=8e-64) Serine carboxypeptidase-like 48 OS=Arabidopsis thaliana GN=SCPL48 PE=2 SV=2;; (*TAIR) AT3G45010.1 (e_value=6e-65) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510;; (*ITAG) Solyc06g074850.2.1 (e_value=8e-81) genomic_reference:SL2.40ch06 gene_region:42773493-42776873 transcript_region:SL2.40ch06:42773493..42776873+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase (AHRD V1 **** Q2Z1Y2_PRUMU); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00012847g0001.1 protein NbS00034095g0001.1 protein ; (*GB) gi|373501951|gb|AEY75248.1| (e_value=5e-64) ammonium transporter [Malus hupehensis];; (*SWP) sp|Q8S230|AMT22_ORYSJ (e_value=1e-52) Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2;; (*TAIR) AT2G38290.1 (e_value=1e-49) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc10g076480.1.1 (e_value=2e-77) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58796692-58799491 transcript_region:SL2.40ch10:58796692..58799491+ go_terms:GO:0016020 functional_description:"Ammonium transporter (AHRD V1 ***- B9HCZ0_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0016020 NbS00003281g0004.1 protein NbS00027403g0002.1 protein NbS00049041g0001.1 protein ; (*ITAG) Solyc11g065520.1.1 (e_value=7e-12) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00016955g0003.1 protein NbS00027316g0003.1 protein ; (*GB) gi|225429303|ref|XP_002270096.1| (e_value=3e-174) PREDICTED: uncharacterized protein LOC100243866 [Vitis vinifera];; (*TAIR) AT2G15020.1 (e_value=6e-147) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6491706-6493286 REVERSE LENGTH=526;; (*ITAG) Solyc10g018120.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6625022-6627035 transcript_region:SL2.40ch10:6625022..6627035+ functional_description:"Unknown Protein (AHRD V1)"; NbC23651759g0001.1 protein ; (*GB) gi|356552456|ref|XP_003544583.1| (e_value=1e-34) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Glycine max];; (*TAIR) AT4G35380.1 (e_value=2e-35) | Symbols: | SEC7-like guanine nucleotide exchange family protein | chr4:16819883-16825960 FORWARD LENGTH=1706;; (*ITAG) Solyc01g112350.2.1 (e_value=4e-41) genomic_reference:SL2.40ch01 gene_region:90197517-90206578 transcript_region:SL2.40ch01:90197517..90206578+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 *--* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00037467g0001.1 protein NbS00002939g0002.1 protein ; (*GB) gi|356523153|ref|XP_003530206.1| (e_value=5e-19) PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max];; (*TAIR) AT5G02310.1 (e_value=2e-15) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=3e-24) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00030305g0002.1 protein NbS00016312g0003.1 protein NbS00037284g0001.1 protein ; (*GB) gi|77998071|gb|ABB16418.1| (e_value=3e-34) mitogen-activated protein kinase Ntf4-2 [Nicotiana tabacum];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=1e-35) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=5e-30) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc08g014420.2.1 (e_value=3e-36) genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00030888g0001.1 protein NbS00004624g0002.1 protein NbS00019324g0001.1 protein NbS00009732g0002.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=1e-15) hypothetical protein VITISV_038665 [Vitis vinifera];; (*ITAG) Solyc02g062480.1.1 (e_value=4e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28737836-28740370 transcript_region:SL2.40ch02:28737836..28740370- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-A Gag-Pol polyprotein (AHRD V1 *-*- YA11B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00053751g0002.1 protein ; (*GB) gi|225454266|ref|XP_002275090.1| (e_value=4e-46) PREDICTED: probable anion transporter 2, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q652N5|PHT44_ORYSJ (e_value=8e-28) Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1;; (*TAIR) AT4G00370.1 (e_value=2e-23) | Symbols: ANTR2, PHT4;4 | Major facilitator superfamily protein | chr4:163153-166111 REVERSE LENGTH=541;; (*ITAG) Solyc01g094720.2.1 (e_value=4e-119) genomic_reference:SL2.40ch01 gene_region:77913332-77919557 transcript_region:SL2.40ch01:77913332..77919557+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00048131g0001.1 protein NbS00027560g0001.1 protein ; (*GB) gi|225438277|ref|XP_002268625.1| (e_value=6e-76) PREDICTED: succinate-semialdehyde dehydrogenase (acetylating)-like [Vitis vinifera];; (*SWP) sp|A4YGN0|SUCD_METS5 (e_value=7e-18) Succinate-semialdehyde dehydrogenase (acetylating) OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1424 PE=1 SV=1;; (*TAIR) AT5G63620.1 (e_value=3e-66) | Symbols: | GroES-like zinc-binding alcohol dehydrogenase family protein | chr5:25466380-25468296 REVERSE LENGTH=427;; (*ITAG) Solyc05g056540.2.1 (e_value=1e-95) genomic_reference:SL2.40ch05 gene_region:64952197-64957183 transcript_region:SL2.40ch05:64952197..64957183- go_terms:GO:0004024 functional_description:"Alcohol dehydrogenase-like protein (AHRD V1 **** Q8LDF7_ARATH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00016614g0001.1 protein ; (*GB) gi|29170491|dbj|BAC66162.1| (e_value=6e-91) myosin XI [Nicotiana tabacum];; (*TAIR) AT4G28710.1 (e_value=3e-66) | Symbols: XIH, ATXIH | Myosin family protein with Dil domain | chr4:14172280-14181771 FORWARD LENGTH=1516;; (*ITAG) Solyc06g008090.2.1 (e_value=1e-102) genomic_reference:SL2.40ch06 gene_region:1959559-1982019 transcript_region:SL2.40ch06:1959559..1982019- go_terms:GO:0060001 functional_description:"Myosin XI-2 (AHRD V1 ***- B0CN59_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00023009g0104.1 protein NbS00003822g0001.1 protein NbS00017506g0002.1 protein ; (*GB) gi|255569472|ref|XP_002525703.1| (e_value=1e-27) HSP90 co-chaperone, putative [Ricinus communis];; (*SWP) sp|Q6ID70|Y3377_ARATH (e_value=5e-23) Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1;; (*TAIR) AT3G03773.2 (e_value=1e-23) | Symbols: | HSP20-like chaperones superfamily protein | chr3:951628-953490 FORWARD LENGTH=204;; (*ITAG) Solyc10g081360.1.1 (e_value=4e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61781989-61786030 transcript_region:SL2.40ch10:61781989..61786030- functional_description:"Tyrosine phosphatase-like protein ptplad1 (AHRD V1 **-- B9EMH6_SALSA); contains Interpro domain(s) IPR017447 CS "; NbS00017506g0003.1 protein ; (*GB) gi|224146046|ref|XP_002325859.1| (e_value=2e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6ID70|Y3377_ARATH (e_value=3e-25) Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1;; (*TAIR) AT3G03773.1 (e_value=3e-26) | Symbols: | HSP20-like chaperones superfamily protein | chr3:951885-953490 FORWARD LENGTH=150;; (*ITAG) Solyc10g081360.1.1 (e_value=9e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61781989-61786030 transcript_region:SL2.40ch10:61781989..61786030- functional_description:"Tyrosine phosphatase-like protein ptplad1 (AHRD V1 **-- B9EMH6_SALSA); contains Interpro domain(s) IPR017447 CS "; NbS00026085g0001.1 protein ; (*ITAG) Solyc01g066890.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00026085g0002.1 protein NbS00021299g0004.1 protein NbS00004232g0002.1 protein NbS00013649g0003.1 protein NbS00061517g0001.1 protein ; (*GB) gi|225424178|ref|XP_002280443.1| (e_value=3e-59) PREDICTED: pentatricopeptide repeat-containing protein At1g71060, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C9A2|PP112_ARATH (e_value=3e-60) Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1;; (*TAIR) AT1G71060.1 (e_value=3e-61) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26805651-26807183 REVERSE LENGTH=510;; (*ITAG) Solyc05g008330.1.1 (e_value=6e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2696673-2698238 transcript_region:SL2.40ch05:2696673..2698238- functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE8_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004308g0001.1 protein NbS00049630g0001.1 protein ; (*GB) gi|56784991|dbj|BAD82521.1| (e_value=2e-38) putative ATP synthase beta subunit [Oryza sativa Japonica Group];; (*SWP) sp|Q01859|ATPBM_ORYSJ (e_value=2e-39) ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2;; (*TAIR) AT5G08680.1 (e_value=1e-38) | Symbols: | ATP synthase alpha/beta family protein | chr5:2821992-2824683 FORWARD LENGTH=559;; (*ITAG) Solyc02g091130.2.1 (e_value=1e-40) genomic_reference:SL2.40ch02 gene_region:47122405-47125579 transcript_region:SL2.40ch02:47122405..47125579+ go_terms:GO:0005507 functional_description:"ATP synthase subunit beta (AHRD V1 ***- Q9ZR78_NICSY); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0005507 NbS00022688g0001.1 protein ; (*GB) gi|297734157|emb|CBI15404.3| (e_value=2e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G18560.1 (e_value=2e-22) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690;; (*ITAG) Solyc03g119830.2.1 (e_value=5e-32) genomic_reference:SL2.40ch03 gene_region:62445233-62448653 transcript_region:SL2.40ch03:62445233..62448653- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q10P19_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00022688g0003.1 protein NbS00032845g0001.1 protein NbS00010712g0003.1 protein ; (*ITAG) Solyc05g012500.2.1 (e_value=4e-15) genomic_reference:SL2.40ch05 gene_region:5742002-5745384 transcript_region:SL2.40ch05:5742002..5745384- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 *-*- Q6IEQ2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00018722g0002.1 protein NbS00050933g0001.1 protein ; (*GB) gi|356505390|ref|XP_003521474.1| (e_value=4e-28) PREDICTED: 125 kDa kinesin-related protein-like [Glycine max];; (*SWP) sp|O23826|K125_TOBAC (e_value=2e-29) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.2 (e_value=3e-29) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1040;; (*ITAG) Solyc10g083310.1.1 (e_value=5e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00056289g0004.1 protein NbS00056289g0005.1 protein ; (*GB) gi|147788961|emb|CAN73724.1| (e_value=5e-15) hypothetical protein VITISV_016652 [Vitis vinifera];; (*ITAG) Solyc01g079600.2.1 (e_value=4e-25) genomic_reference:SL2.40ch01 gene_region:71215157-71218914 transcript_region:SL2.40ch01:71215157..71218914- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 *-*- C1FIH0_9CHLO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00008178g0004.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=3e-14) hypothetical protein VITISV_038665 [Vitis vinifera]; NbS00008178g0005.1 protein NbS00032729g0004.1 protein ; (*ITAG) Solyc00g069880.2.1 (e_value=1e-26) genomic_reference:SL2.40ch00 gene_region:14546579-14550015 transcript_region:SL2.40ch00:14546579..14550015+ functional_description:"Unknown Protein (AHRD V1)"; NbS00060684g0002.1 protein NbC24750464g0001.1 protein ; (*GB) gi|1773014|emb|CAA71369.1| (e_value=2e-100) chloride channel Stclc1 [Solanum tuberosum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=8e-86) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=6e-87) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc10g044470.1.1 (e_value=2e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21959526-21966277 transcript_region:SL2.40ch10:21959526..21966277+ go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00020357g0004.1 protein ; (*GB) gi|309296913|gb|ADO64264.1| (e_value=4e-38) eukaryotic initiation factor iso4G [Carica papaya];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=3e-21) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.1 (e_value=2e-25) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780;; (*ITAG) Solyc07g005810.2.1 (e_value=2e-53) genomic_reference:SL2.40ch07 gene_region:648580-654196 transcript_region:SL2.40ch07:648580..654196- go_terms:GO:0003723 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0003723 NbS00032360g0001.1 protein NbS00061904g0003.1 protein NbS00024206g0001.1 protein NbS00061399g0001.1 protein NbS00035409g0001.1 protein ; (*GB) gi|356496629|ref|XP_003517168.1| (e_value=8e-20) PREDICTED: 26S proteasome non-ATPase regulatory subunit 4-like [Glycine max];; (*ITAG) Solyc02g083710.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00016058g0002.1 protein ; (*GB) gi|51039799|gb|AAT94403.1| (e_value=7e-16) ankyrin protein kinase [Brassica napus];; (*TAIR) AT2G31800.1 (e_value=6e-18) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=3e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbC24257655g0001.1 protein ; (*ITAG) Solyc06g068980.2.1 (e_value=4e-35) genomic_reference:SL2.40ch06 gene_region:39180022-39189671 transcript_region:SL2.40ch06:39180022..39189671- go_terms:GO:0004712,GO:0004709 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_HUMAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712,GO:0004709 NbS00019951g0001.1 protein NbS00000732g0001.1 protein ; (*GB) gi|359475788|ref|XP_002263713.2| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100250223 [Vitis vinifera];; (*TAIR) AT1G33410.2 (e_value=8e-29) | Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504;; (*ITAG) Solyc01g102540.2.1 (e_value=5e-51) genomic_reference:SL2.40ch01 gene_region:83081913-83093458 transcript_region:SL2.40ch01:83081913..83093458- go_terms:GO:0003993 functional_description:"Nucleoporin (AHRD V1 *-*- C0KG86_DROSI)"; GO:0003993 NbS00011165g0001.1 protein NbS00015602g0002.1 protein NbS00047436g0002.1 protein ; (*GB) gi|358344950|ref|XP_003636548.1| (e_value=2e-13) hypothetical protein MTR_045s0042 [Medicago truncatula]; NbS00019177g0003.1 protein NbS00005138g0002.1 protein NbS00041094g0001.1 protein NbS00041094g0002.1 protein NbS00000069g0002.1 protein NbC24081199g0001.1 protein ; (*GB) gi|225454759|ref|XP_002274164.1| (e_value=2e-33) PREDICTED: uncharacterized protein LOC100244246 [Vitis vinifera];; (*TAIR) AT5G46870.1 (e_value=3e-34) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:19015486-19016990 FORWARD LENGTH=295;; (*ITAG) Solyc03g097110.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:52892623-52898264 transcript_region:SL2.40ch03:52892623..52898264- go_terms:GO:0003676,GO:0000166,GO:0055114 functional_description:"RNA recognition motif-containing protein (AHRD V1 **-- D7M9G3_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0003676,GO:0000166,GO:0055114 NbC24865120g0001.1 protein ; (*GB) gi|225428586|ref|XP_002281132.1| (e_value=8e-76) PREDICTED: pentatricopeptide repeat-containing protein At2g15980-like [Vitis vinifera];; (*SWP) sp|Q9XIM8|PP155_ARATH (e_value=3e-63) Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1;; (*TAIR) AT2G15980.1 (e_value=3e-64) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:6951349-6952845 REVERSE LENGTH=498;; (*ITAG) Solyc10g051010.1.1 (e_value=5e-123) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:46846396-46847877 transcript_region:SL2.40ch10:46846396..46847877- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MF65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00061712g0001.1 protein ; (*GB) gi|225460123|ref|XP_002275735.1| (e_value=4e-31) PREDICTED: tubulin-specific chaperone E [Vitis vinifera];; (*SWP) sp|Q5U378|TBCE_DANRE (e_value=1e-15) Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2;; (*TAIR) AT1G71440.1 (e_value=2e-29) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042470.1.1 (e_value=9e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32151789-32164530 transcript_region:SL2.40ch11:32151789..32164530+ functional_description:"Tubulin-specific chaperone E (AHRD V1 ***- C0S593_PARBP); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; NbS00000164g0002.1 protein NbS00000164g0006.1 protein NbS00045703g0001.1 protein NbS00002047g0001.1 protein NbS00013740g0002.1 protein NbS00015965g0002.1 protein ; (*GB) gi|255546751|ref|XP_002514434.1| (e_value=6e-56) Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=1e-51) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=9e-53) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc10g081610.1.1 (e_value=1e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61963279-61985280 transcript_region:SL2.40ch10:61963279..61985280- go_terms:GO:0006265,GO:0006511 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 ***- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0006265,GO:0006511 NbS00017982g0001.1 protein NbS00010405g0001.1 protein NbS00010405g0006.1 protein NbS00014021g0001.1 protein ; (*GB) gi|255584312|ref|XP_002532892.1| (e_value=1e-17) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G38760.1 (e_value=1e-14) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr5:15524249-15524743 FORWARD LENGTH=67;; (*ITAG) Solyc02g065640.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:31376997-31378486 transcript_region:SL2.40ch02:31376997..31378486+ functional_description:"ABA-inducible protein-like protein (AHRD V1 ***- A8IXE3_BRACM)"; NbS00008736g0001.1 protein NbS00049450g0003.1 protein NbS00037736g0101.1 protein NbS00008991g0001.1 protein NbS00001726g0001.1 protein NbS00031361g0001.1 protein NbC23730213g0001.1 protein ; (*GB) gi|350536667|ref|NP_001234770.1| (e_value=2e-49) dihydrolipoamide dehydrogenase precursor [Solanum lycopersicum];; (*SWP) sp|Q9M5K3|DLDH1_ARATH (e_value=1e-45) Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2;; (*TAIR) AT1G48030.2 (e_value=8e-47) | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase 1 | chr1:17717432-17719141 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=4e-52) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00015265g0004.1 protein NbS00008994g0001.1 protein NbS00045439g0001.1 protein ; (*GB) gi|359490805|ref|XP_002272676.2| (e_value=7e-68) PREDICTED: uncharacterized protein LOC100252197 [Vitis vinifera];; (*TAIR) AT5G24280.1 (e_value=9e-47) | Symbols: GMI1 | gamma-irradiation and mitomycin c induced 1 | chr5:8251378-8261401 REVERSE LENGTH=1598;; (*ITAG) Solyc03g083130.1.1 (e_value=2e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46489215-46507533 transcript_region:SL2.40ch03:46489215..46507533+ functional_description:"At5g24280-like protein (Fragment) (AHRD V1 *-*- Q3YI82_ARALY)"; NbS00056258g0002.1 protein ; (*GB) gi|359497052|ref|XP_002269002.2| (e_value=2e-35) PREDICTED: UPF0308 protein At2g37240, chloroplastic-like [Vitis vinifera];; (*TAIR) AT5G65840.1 (e_value=7e-27) | Symbols: | Thioredoxin superfamily protein | chr5:26344097-26346057 REVERSE LENGTH=275;; (*ITAG) Solyc02g064550.2.1 (e_value=5e-40) genomic_reference:SL2.40ch02 gene_region:30245428-30252431 transcript_region:SL2.40ch02:30245428..30252431- functional_description:"C1orf93 homolog (AHRD V1 **-- C1C416_RANCA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbC23315601g0001.1 protein ; (*GB) gi|225449046|ref|XP_002273970.1| (e_value=3e-16) PREDICTED: CASP-like protein At2g28370 [Vitis vinifera];; (*ITAG) Solyc11g069480.1.1 (e_value=1e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51157067-51160290 transcript_region:SL2.40ch11:51157067..51160290- functional_description:"UPF0497 membrane protein At2g28370 (AHRD V1 ***- U4977_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00027357g0002.1 protein NbS00039187g0004.1 protein ; (*ITAG) Solyc11g068900.1.1 (e_value=3e-13) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50552542-50553312 transcript_region:SL2.40ch11:50552542..50553312- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 *-*- Q2RAC3_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00044832g0002.1 protein NbS00041608g0001.1 protein NbS00007237g0001.1 protein NbS00007237g0002.1 protein NbS00015407g0003.1 protein NbS00007413g0003.1 protein NbS00010071g0002.1 protein ; (*GB) gi|4107276|emb|CAA67130.1| (e_value=0.0) acetyl-CoA synthetase [Solanum tuberosum];; (*SWP) sp|B9DGD6|ACS_ARATH (e_value=2e-177) Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1;; (*TAIR) AT5G36880.2 (e_value=1e-178) | Symbols: ACS | acetyl-CoA synthetase | chr5:14534961-14540296 REVERSE LENGTH=743;; (*ITAG) Solyc02g094640.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:49807399-49821989 transcript_region:SL2.40ch02:49807399..49821989+ go_terms:GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- Q2RNC6_RHORT); contains Interpro domain(s) IPR011904 Acetate--CoA ligase "; GO:0003987 NbS00003508g0004.1 protein NbS00032789g0002.1 protein NbS00007961g0001.1 protein NbC23642249g0001.1 protein ; (*GB) gi|225442904|ref|XP_002264123.1| (e_value=3e-32) PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera];; (*SWP) sp|Q9LSB8|PP235_ARATH (e_value=1e-25) Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2;; (*TAIR) AT3G15930.1 (e_value=1e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:5387444-5389690 FORWARD LENGTH=687;; (*ITAG) Solyc03g116840.1.1 (e_value=9e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbS00001874g0001.1 protein ; (*GB) gi|75164750|sp|Q948X8.1|MTNA_TOBAC (e_value=4e-60) RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein;; (*SWP) sp|Q948X8|MTNA_TOBAC (e_value=1e-61) Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1;; (*TAIR) AT2G05830.4 (e_value=5e-36) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr2:2229964-2231839 FORWARD LENGTH=328;; (*ITAG) Solyc08g022210.2.1 (e_value=2e-52) genomic_reference:SL2.40ch08 gene_region:14105526-14113435 transcript_region:SL2.40ch08:14105526..14113435- go_terms:GO:0003743 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- B6TZD1_MAIZE); contains Interpro domain(s) IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase "; GO:0003743 NbS00000748g0003.1 protein ; (*ITAG) Solyc09g064780.2.1 (e_value=2e-17) genomic_reference:SL2.40ch09 gene_region:57766534-57778114 transcript_region:SL2.40ch09:57766534..57778114+ functional_description:"At2g23590-like protein (Fragment) (AHRD V1 *-*- B2CXK6_CARAS)"; NbS00012717g0001.1 protein NbS00018333g0005.1 protein NbS00008412g0001.1 protein ; (*GB) gi|255563939|ref|XP_002522969.1| (e_value=1e-38) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q50EK1|C16B1_PICSI (e_value=2e-24) Cytochrome P450 716B1 OS=Picea sitchensis GN=CYP716B1 PE=2 SV=1;; (*TAIR) AT5G36130.1 (e_value=1e-22) | Symbols: | Cytochrome P450 superfamily protein | chr5:14209293-14209811 REVERSE LENGTH=140;; (*ITAG) Solyc07g064450.2.1 (e_value=2e-51) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00024860g0003.1 protein NbS00024860g0004.1 protein NbS00030265g0002.1 protein NbS00039141g0001.1 protein NbS00050215g0001.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004296g0002.1 protein NbS00023303g0101.1 protein NbS00043942g0002.1 protein ; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=5e-31) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=1e-22) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=9e-24) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc08g081830.2.1 (e_value=3e-55) genomic_reference:SL2.40ch08 gene_region:61940975-61945234 transcript_region:SL2.40ch08:61940975..61945234+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00014651g0004.1 protein ; (*GB) gi|357113541|ref|XP_003558561.1| (e_value=8e-23) PREDICTED: uncharacterized protein LOC100827817 [Brachypodium distachyon];; (*TAIR) AT4G33830.1 (e_value=5e-21) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16220324-16222676 REVERSE LENGTH=576;; (*ITAG) Solyc05g051260.2.1 (e_value=6e-30) genomic_reference:SL2.40ch05 gene_region:60688299-60691358 transcript_region:SL2.40ch05:60688299..60691358+ go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 **-- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00014990g0001.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=2e-14) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00003420g0001.1 protein ; (*GB) gi|2281330|gb|AAB69758.1| (e_value=2e-18) putative pectate lyase Nt59 [Nicotiana tabacum];; (*SWP) sp|P15722|PLY59_SOLLC (e_value=3e-19) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT3G01270.1 (e_value=3e-15) | Symbols: | Pectate lyase family protein | chr3:82892-84720 REVERSE LENGTH=475;; (*ITAG) Solyc02g087670.2.1 (e_value=2e-24) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00028327g0001.1 protein ; (*GB) gi|147858693|emb|CAN78881.1| (e_value=4e-27) hypothetical protein VITISV_024992 [Vitis vinifera];; (*ITAG) Solyc04g039950.2.1 (e_value=6e-59) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00007629g0102.1 protein NbS00009377g0001.1 protein ; (*GB) gi|224079139|ref|XP_002305764.1| (e_value=9e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT2G34050.1 (e_value=6e-18) | Symbols: | INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248;; (*ITAG) Solyc02g031770.2.1 (e_value=4e-45) genomic_reference:SL2.40ch02 gene_region:17618833-17623195 transcript_region:SL2.40ch02:17618833..17623195+ go_terms:GO:0005515 functional_description:"ATP synthase mitochondrial F1 complex assembly factor 1 (AHRD V1 **-- ATPF1_HUMAN); contains Interpro domain(s) IPR010591 ATP11 "; GO:0005515 NbS00009377g0002.1 protein ; (*GB) gi|356517502|ref|XP_003527426.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100803504 isoform 1 [Glycine max];; (*TAIR) AT2G34050.1 (e_value=5e-45) | Symbols: | INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248;; (*ITAG) Solyc02g031770.2.1 (e_value=1e-55) genomic_reference:SL2.40ch02 gene_region:17618833-17623195 transcript_region:SL2.40ch02:17618833..17623195+ go_terms:GO:0005515 functional_description:"ATP synthase mitochondrial F1 complex assembly factor 1 (AHRD V1 **-- ATPF1_HUMAN); contains Interpro domain(s) IPR010591 ATP11 "; GO:0005515 NbS00019981g0003.1 protein NbS00021898g0001.1 protein ; (*GB) gi|255556806|ref|XP_002519436.1| (e_value=9e-67) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09925.1 (e_value=3e-64) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr3:3051868-3052784 REVERSE LENGTH=171; NbS00030766g0001.1 protein NbS00002652g0101.1 protein NbS00012581g0001.1 protein NbS00002621g0103.1 protein NbS00013919g0001.1 protein NbS00054717g0001.1 protein NbS00061925g0001.1 protein NbS00012828g0002.1 protein ; (*GB) gi|302142116|emb|CBI19319.3| (e_value=3e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G27595.1 (e_value=6e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961;; (*ITAG) Solyc04g076910.2.1 (e_value=4e-47) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00012828g0006.1 protein NbS00011780g0003.1 protein ; (*GB) gi|359477635|ref|XP_002274707.2| (e_value=2e-40) PREDICTED: probable inactive serine/threonine-protein kinase lvsG-like [Vitis vinifera];; (*TAIR) AT5G18525.1 (e_value=2e-27) | Symbols: | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases | chr5:6146932-6153658 REVERSE LENGTH=1639;; (*ITAG) Solyc12g099010.1.1 (e_value=2e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64662179-64670542 transcript_region:SL2.40ch12:64662179..64670542- go_terms:GO:0006468 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A2EN39_TRIVA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0006468 NbC23473112g0001.1 protein ; (*GB) gi|18076679|emb|CAC84774.1| (e_value=1e-39) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=7e-21) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=6e-22) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=3e-39) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00014931g0004.1 protein NbS00018900g0001.1 protein NbS00054474g0001.1 protein ; (*GB) gi|225450677|ref|XP_002283157.1| (e_value=1e-76) PREDICTED: topless-related protein 3 [Vitis vinifera];; (*SWP) sp|Q0WV90|TPR1_ARATH (e_value=7e-74) Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3;; (*TAIR) AT1G80490.1 (e_value=6e-75) | Symbols: TPR1 | TOPLESS-related 1 | chr1:30261094-30266446 REVERSE LENGTH=1119;; (*ITAG) Solyc01g100050.2.1 (e_value=2e-82) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00001206g0001.1 protein NbS00001206g0003.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=1e-15) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00010513g0002.1 protein NbC23214544g0001.1 protein ; (*GB) gi|326521782|dbj|BAK00467.1| (e_value=4e-25) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT2G22610.2 (e_value=1e-26) | Symbols: | Di-glucose binding protein with Kinesin motor domain | chr2:9599550-9604626 FORWARD LENGTH=1062;; (*ITAG) Solyc11g010920.1.1 (e_value=5e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3970759-3977638 transcript_region:SL2.40ch11:3970759..3977638+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- A6YTD6_CUCME); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00005915g0001.1 protein NbS00032031g0001.1 protein NbS00032031g0002.1 protein NbS00030005g0001.1 protein NbS00033801g0001.1 protein ; (*GB) gi|296084762|emb|CBI25905.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6R8G0|PHO1A_ARATH (e_value=4e-13) Phosphate transporter PHO1 homolog 10 OS=Arabidopsis thaliana GN=PHO1-H10 PE=2 SV=1;; (*TAIR) AT1G69480.1 (e_value=3e-14) | Symbols: | EXS (ERD1/XPR1/SYG1) family protein | chr1:26114187-26117479 REVERSE LENGTH=777;; (*ITAG) Solyc08g068240.1.1 (e_value=1e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54553451-54557598 transcript_region:SL2.40ch08:54553451..54557598+ go_terms:GO:0016021 functional_description:"Xenotropic and polytropic retrovirus receptor (AHRD V1 **-- B2GU54_XENTR); contains Interpro domain(s) IPR004342 EXS, C-terminal "; GO:0016021 NbS00013763g0001.1 protein NbS00001523g0001.1 protein ; (*GB) gi|225446094|ref|XP_002270118.1| (e_value=1e-71) PREDICTED: uncharacterized protein LOC100266808 [Vitis vinifera];; (*SWP) sp|O49397|ARR10_ARATH (e_value=3e-61) Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1;; (*TAIR) AT4G31920.1 (e_value=2e-62) | Symbols: ARR10, RR10 | response regulator 10 | chr4:15444290-15446766 REVERSE LENGTH=552;; (*ITAG) Solyc12g010330.1.1 (e_value=5e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3391382-3396707 transcript_region:SL2.40ch12:3391382..3396707- go_terms:GO:0003700 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0003700 NbS00031998g0002.1 protein NbS00058238g0001.1 protein ; (*ITAG) Solyc08g006480.2.1 (e_value=5e-29) genomic_reference:SL2.40ch08 gene_region:1068145-1081065 transcript_region:SL2.40ch08:1068145..1081065- functional_description:"Unknown Protein (AHRD V1)"; NbS00026188g0001.1 protein ; (*GB) gi|357494215|ref|XP_003617396.1| (e_value=2e-66) Ribosomal RNA small subunit methyltransferase B [Medicago truncatula];; (*SWP) sp|Q7TS68|NSUN6_MOUSE (e_value=2e-19) Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2;; (*TAIR) AT1G06560.1 (e_value=8e-61) | Symbols: | NOL1/NOP2/sun family protein | chr1:2007660-2011824 FORWARD LENGTH=599;; (*ITAG) Solyc07g045070.2.1 (e_value=6e-73) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbC25844668g0001.1 protein NbC23312891g0001.1 protein ; (*GB) gi|225469045|ref|XP_002267070.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100245966 [Vitis vinifera];; (*TAIR) AT4G23440.1 (e_value=5e-34) | Symbols: | Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964;; (*ITAG) Solyc08g081260.1.1 (e_value=8e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61486528-61489521 transcript_region:SL2.40ch08:61486528..61489521+ go_terms:GO:0031224,GO:0017111 functional_description:"Tir-nbs resistance protein (AHRD V1 **-- B9GWT3_POPTR); contains Interpro domain(s) IPR000157 Toll-Interleukin receptor "; GO:0031224,GO:0017111 NbS00013080g0101.1 protein NbS00023694g0001.1 protein NbS00023694g0003.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=2e-19) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00023694g0004.1 protein NbS00025595g0002.1 protein NbS00007590g0001.1 protein NbS00018447g0003.1 protein NbS00010321g0002.1 protein ; (*GB) gi|356543936|ref|XP_003540414.1| (e_value=9e-48) PREDICTED: TBC1 domain family member 15-like [Glycine max];; (*TAIR) AT4G27100.1 (e_value=8e-50) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:13595845-13598534 FORWARD LENGTH=436;; (*ITAG) Solyc12g005220.1.1 (e_value=3e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:141022-146306 transcript_region:SL2.40ch12:141022..146306+ go_terms:GO:0005622 functional_description:"TBC1 domain family member 17 (AHRD V1 *--- Q0V9K4_XENTR); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00027255g0002.1 protein NbS00041256g0001.1 protein ; (*GB) gi|255574857|ref|XP_002528335.1| (e_value=3e-33) Vesicle transport protein SEC20, putative [Ricinus communis];; (*TAIR) AT3G24315.1 (e_value=1e-27) | Symbols: AtSec20 | Sec20 family protein | chr3:8820599-8822445 REVERSE LENGTH=293;; (*ITAG) Solyc09g090860.2.1 (e_value=8e-49) genomic_reference:SL2.40ch09 gene_region:65598396-65603568 transcript_region:SL2.40ch09:65598396..65603568- functional_description:"Sec20 family protein (AHRD V1 ***- D7L520_ARALY); contains Interpro domain(s) IPR005606 Sec20 "; NbS00031974g0001.1 protein NbS00028370g0001.1 protein ; (*GB) gi|224116528|ref|XP_002331919.1| (e_value=1e-45) oligopeptide transporter OPT family [Populus trichocarpa];; (*SWP) sp|Q9SHY2|YSL7_ARATH (e_value=1e-44) Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1;; (*TAIR) AT1G65730.1 (e_value=8e-46) | Symbols: YSL7 | YELLOW STRIPE like 7 | chr1:24442639-24446122 FORWARD LENGTH=688;; (*ITAG) Solyc03g031920.2.1 (e_value=3e-49) genomic_reference:SL2.40ch03 gene_region:8657524-8664052 transcript_region:SL2.40ch03:8657524..8664052- go_terms:GO:0015198 functional_description:"Yellow stripe-like protein 2.1 (Fragment) (AHRD V1 ***- B4ZYE4_BRAJU); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00031508g0001.1 protein NbS00015255g0002.1 protein NbS00050966g0001.1 protein NbS00010045g0005.1 protein NbS00009422g0001.1 protein NbS00035967g0001.1 protein ; (*GB) gi|147779781|emb|CAN68003.1| (e_value=3e-31) hypothetical protein VITISV_015844 [Vitis vinifera]; NbS00044027g0001.1 protein NbC25857389g0001.1 protein ; (*GB) gi|147859662|emb|CAN81037.1| (e_value=1e-15) hypothetical protein VITISV_017962 [Vitis vinifera];; (*TAIR) AT4G32600.1 (e_value=4e-15) | Symbols: | RING/U-box superfamily protein | chr4:15724010-15725737 FORWARD LENGTH=453;; (*ITAG) Solyc08g067770.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:54003474-54009576 transcript_region:SL2.40ch08:54003474..54009576+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbC24520891g0001.1 protein ; (*GB) gi|147777193|emb|CAN65431.1| (e_value=1e-21) hypothetical protein VITISV_017099 [Vitis vinifera];; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=4e-19) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT1G12760.1 (e_value=3e-20) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr1:4348728-4350512 FORWARD LENGTH=408;; (*ITAG) Solyc01g091600.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:76945255-76949653 transcript_region:SL2.40ch01:76945255..76949653- go_terms:GO:0004842 functional_description:"RING finger family protein (AHRD V1 *-*- D6RU92_SILLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00021472g0001.1 protein NbS00001998g0002.1 protein NbS00058444g0002.1 protein NbS00015327g0003.1 protein NbS00058164g0002.1 protein ; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g117270.1.1 (e_value=4e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:60500607-60501878 transcript_region:SL2.40ch03:60500607..60501878+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC23829173g0001.1 protein ; (*GB) gi|296087700|emb|CBI34956.3| (e_value=8e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FL12|DEGP9_ARATH (e_value=5e-38) Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1;; (*TAIR) AT5G40200.1 (e_value=4e-39) | Symbols: DegP9 | DegP protease 9 | chr5:16070402-16073101 FORWARD LENGTH=592;; (*ITAG) Solyc12g062290.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:49709104-49714242 transcript_region:SL2.40ch12:49709104..49714242- go_terms:GO:0004252 functional_description:"Serine protease (AHRD V1 **** D8UJN6_VOLCA); contains Interpro domain(s) IPR015724 Serine endopeptidase DegP2 "; GO:0004252 NbS00040028g0001.1 protein ; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=8e-52) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=4e-23) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=2e-54) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00029934g0002.1 protein NbS00024102g0001.1 protein NbS00001959g0002.1 protein NbS00008300g0001.1 protein NbS00017038g0002.1 protein NbS00025653g0001.1 protein NbS00013134g0001.1 protein NbS00014696g0001.1 protein NbS00000372g0001.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=3e-11) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00006165g0002.1 protein NbS00006165g0003.1 protein NbS00014128g0002.1 protein NbS00058699g0002.1 protein NbC23353710g0001.1 protein ; (*ITAG) Solyc02g072140.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36004961-36006331 transcript_region:SL2.40ch02:36004961..36006331+ functional_description:"UNE1-like protein (AHRD V1 ***- B2ZAQ7_GOSRA); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00023227g0002.1 protein NbS00025205g0001.1 protein NbS00014124g0003.1 protein ; (*ITAG) Solyc10g012480.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:5318631-5319383 transcript_region:SL2.40ch10:5318631..5319383+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001551g0001.1 protein NbS00059580g0001.1 protein NbS00023391g0001.1 protein ; (*GB) gi|356576051|ref|XP_003556148.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100814875 [Glycine max];; (*TAIR) AT1G76810.1 (e_value=9e-20) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294;; (*ITAG) Solyc03g058350.2.1 (e_value=3e-24) genomic_reference:SL2.40ch03 gene_region:21329645-21340801 transcript_region:SL2.40ch03:21329645..21340801+ go_terms:GO:0003743 functional_description:"Translation initiation factor (AHRD V1 *-** Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0003743 NbC25255290g0001.1 protein ; (*ITAG) Solyc02g031860.2.1 (e_value=8e-27) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00058010g0001.1 protein NbS00004422g0004.1 protein ; (*GB) gi|147770426|emb|CAN71536.1| (e_value=2e-36) hypothetical protein VITISV_019786 [Vitis vinifera]; NbS00056130g0001.1 protein ; (*GB) gi|125583980|gb|EAZ24911.1| (e_value=4e-17) hypothetical protein OsJ_08691 [Oryza sativa Japonica Group];; (*ITAG) Solyc11g068640.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00020769g0001.1 protein NbS00020769g0103.1 protein NbS00024560g0008.1 protein ; (*GB) gi|297807725|ref|XP_002871746.1| (e_value=2e-12) hypothetical protein ARALYDRAFT_909689 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G17020.2 (e_value=6e-15) | Symbols: XPO1A | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1060;; (*ITAG) Solyc03g096920.2.1 (e_value=9e-15) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "; GO:0005049 NbS00007932g0002.1 protein NbS00004149g0102.1 protein NbS00023976g0002.1 protein ; (*GB) gi|147823225|emb|CAN68609.1| (e_value=2e-21) hypothetical protein VITISV_012924 [Vitis vinifera];; (*TAIR) AT3G43300.1 (e_value=6e-13) | Symbols: ATMIN7, BEN1 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1758;; (*ITAG) Solyc12g017830.1.1 (e_value=4e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00027095g0001.1 protein NbS00034033g0002.1 protein NbS00006201g0002.1 protein NbS00039851g0001.1 protein ; (*GB) gi|359476575|ref|XP_002267239.2| (e_value=4e-87) PREDICTED: ATP-dependent DNA helicase DDM1-like [Vitis vinifera];; (*SWP) sp|Q9XFH4|DDM1_ARATH (e_value=3e-76) ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1 PE=1 SV=1;; (*TAIR) AT5G66750.1 (e_value=2e-77) | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | chromatin remodeling 1 | chr5:26649050-26652869 FORWARD LENGTH=764;; (*ITAG) Solyc02g085390.2.1 (e_value=7e-101) genomic_reference:SL2.40ch02 gene_region:42888431-42896373 transcript_region:SL2.40ch02:42888431..42896373- go_terms:GO:0004003 functional_description:"Uncharacterized ATP-dependent helicase C25A8.01c (AHRD V1 **-* YFC1_SCHPO); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00015956g0001.1 protein NbS00006750g0002.1 protein NbS00001483g0201.1 protein NbS00009854g0001.1 protein ; (*ITAG) Solyc03g118200.2.1 (e_value=9e-18) genomic_reference:SL2.40ch03 gene_region:61188206-61198586 transcript_region:SL2.40ch03:61188206..61198586- go_terms:GO:0005544 functional_description:"Copine-3 (AHRD V1 ***- B6SK39_MAIZE); contains Interpro domain(s) IPR010734 Copine "; GO:0005544 NbS00026983g0001.1 protein NbS00023655g0001.1 protein NbS00039754g0001.1 protein NbS00006953g0005.1 protein NbS00004847g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-18) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbC23387224g0001.1 protein ; (*GB) gi|356526083|ref|XP_003531649.1| (e_value=2e-34) PREDICTED: ABC transporter G family member 36-like [Glycine max];; (*SWP) sp|Q5Z9S8|PDR12_ORYSJ (e_value=2e-34) Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1;; (*TAIR) AT3G16340.2 (e_value=1e-34) | Symbols: PDR1 | pleiotropic drug resistance 1 | chr3:5539897-5546263 FORWARD LENGTH=1411;; (*ITAG) Solyc03g120980.2.1 (e_value=7e-37) genomic_reference:SL2.40ch03 gene_region:63257744-63266892 transcript_region:SL2.40ch03:63257744..63266892+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00010145g0002.1 protein NbS00001956g0102.1 protein NbS00005443g0002.1 protein ; (*GB) gi|1710401|sp|P49730.1|RIR2_TOBAC (e_value=3e-43) RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit;; (*SWP) sp|P49730|RIR2_TOBAC (e_value=8e-45) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G27060.1 (e_value=8e-36) | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332;; (*ITAG) Solyc02g094160.1.1 (e_value=1e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:49359009-49359998 transcript_region:SL2.40ch02:49359009..49359998+ go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00016212g0103.1 protein NbS00006339g0001.1 protein NbS00015666g0001.1 protein NbS00015259g0002.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=8e-27) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=6e-26) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=8e-37) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00015126g0002.1 protein ; (*ITAG) Solyc01g106030.2.1 (e_value=1e-12) genomic_reference:SL2.40ch01 gene_region:85768997-85775706 transcript_region:SL2.40ch01:85768997..85775706+ go_terms:GO:0008431 functional_description:"Pseudo response regulator (AHRD V1 *--- B9N4C8_POPTR); contains Interpro domain(s) IPR010402 CCT domain "; GO:0008431 NbS00048655g0001.1 protein ; (*GB) gi|297745347|emb|CBI40427.3| (e_value=8e-58) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q66PF2|URT1_FRAAN (e_value=5e-42) Putative UDP-rhamnose:rhamnosyltransferase 1 OS=Fragaria ananassa GN=GT4 PE=2 SV=1;; (*TAIR) AT5G49690.1 (e_value=6e-39) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr5:20189968-20191350 REVERSE LENGTH=460;; (*ITAG) Solyc11g010760.1.1 (e_value=7e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3795064-3796488 transcript_region:SL2.40ch11:3795064..3796488+ go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase (AHRD V1 ***- Q8LKG3_STERE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00001612g0002.1 protein ; (*GB) gi|131399|sp|P06183.1|PSBR_SOLTU (e_value=2e-43) RecName: Full=Photosystem II 10 kDa polypeptide, chloroplastic; AltName: Full=Light-inducible tissue-specific ST-LS1 protein; Flags: Precursor;; (*SWP) sp|P06183|PSBR_SOLTU (e_value=6e-45) Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1;; (*TAIR) AT1G79040.1 (e_value=7e-43) | Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140;; (*ITAG) Solyc07g066310.2.1 (e_value=6e-46) genomic_reference:SL2.40ch07 gene_region:65009418-65011119 transcript_region:SL2.40ch07:65009418..65011119+ go_terms:GO:0042651 functional_description:"photosystem II polypeptide (AHRD V1 ***- Q6V7X5_TRIPR); contains Interpro domain(s) IPR006814 Photosystem II protein PsbR "; GO:0042651 NbS00001612g0003.1 protein NbS00031967g0003.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00006980g0101.1 protein NbS00006980g0102.1 protein NbS00038702g0001.1 protein NbS00038702g0002.1 protein NbS00041770g0001.1 protein NbS00004527g0001.1 protein NbS00054926g0002.1 protein ; (*GB) gi|255562295|ref|XP_002522155.1| (e_value=1e-80) calcium ion binding protein, putative [Ricinus communis];; (*TAIR) AT1G53210.1 (e_value=8e-68) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc07g062700.2.1 (e_value=8e-91) genomic_reference:SL2.40ch07 gene_region:62603490-62608714 transcript_region:SL2.40ch07:62603490..62608714- go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00054926g0005.1 protein NbC24662774g0001.1 protein ; (*GB) gi|218198620|gb|EEC81047.1| (e_value=5e-26) hypothetical protein OsI_23839 [Oryza sativa Indica Group];; (*TAIR) AT4G34100.1 (e_value=4e-28) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1108;; (*ITAG) Solyc01g107880.2.1 (e_value=7e-30) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00019221g0001.1 protein NbC24545624g0001.1 protein ; (*GB) gi|357468583|ref|XP_003604576.1| (e_value=3e-71) hypothetical protein MTR_4g014680 [Medicago truncatula];; (*SWP) sp|O65020|ETO1_ARATH (e_value=2e-68) Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2;; (*TAIR) AT3G51770.1 (e_value=2e-69) | Symbols: ETO1, ATEOL1 | tetratricopeptide repeat (TPR)-containing protein | chr3:19200328-19203974 REVERSE LENGTH=951;; (*ITAG) Solyc10g076450.1.1 (e_value=3e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58747957-58751931 transcript_region:SL2.40ch10:58747957..58751931- go_terms:GO:0005515,GO:0005488 functional_description:"Ethylene-overproduction protein 1 (AHRD V1 **-- D7LTY2_ARALY); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0005488 NbS00007061g0001.1 protein NbS00002561g0001.1 protein NbS00006103g0001.1 protein NbS00023927g0001.1 protein NbS00023927g0007.1 protein NbS00011380g0001.1 protein NbS00011380g0002.1 protein NbS00011380g0003.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00030679g0003.1 protein NbS00018793g0001.1 protein NbS00004813g0302.1 protein NbS00001712g0002.1 protein NbS00058962g0001.1 protein ; (*GB) gi|359483381|ref|XP_002264678.2| (e_value=3e-47) PREDICTED: beta-glucosidase 46-like [Vitis vinifera];; (*SWP) sp|Q9SVS1|BGL47_ARATH (e_value=2e-43) Beta-glucosidase 47 OS=Arabidopsis thaliana GN=BGLU47 PE=2 SV=2;; (*TAIR) AT4G21760.1 (e_value=2e-44) | Symbols: BGLU47 | beta-glucosidase 47 | chr4:11561229-11563871 FORWARD LENGTH=535;; (*ITAG) Solyc02g080310.2.1 (e_value=8e-61) genomic_reference:SL2.40ch02 gene_region:39140632-39145281 transcript_region:SL2.40ch02:39140632..39145281+ go_terms:GO:0047782 functional_description:"Beta-glucosidase 47 (AHRD V1 **** D7MEP5_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbC23767886g0001.1 protein ; (*GB) gi|224104961|ref|XP_002313635.1| (e_value=3e-30) vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa];; (*SWP) sp|Q42699|METE_CATRO (e_value=4e-30) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT3G03780.3 (e_value=6e-31) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=8e-33) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00047771g0001.1 protein ; (*GB) gi|283837093|emb|CBH19891.1| (e_value=2e-25) cell cycle switch 52A [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q8L3Z8|FZR2_ARATH (e_value=8e-26) Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1;; (*TAIR) AT4G22910.1 (e_value=6e-27) | Symbols: FZR2, CCS52A1 | FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483;; (*ITAG) Solyc08g080080.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:60574341-60578537 transcript_region:SL2.40ch08:60574341..60578537+ go_terms:GO:0004872 functional_description:"WD-repeat cell cycle regulatory protein (AHRD V1 **-- Q9M7I2_MEDTR); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00001980g0003.1 protein NbS00001980g0101.1 protein NbS00001980g0102.1 protein NbS00001980g0202.1 protein NbS00051615g0001.1 protein ; (*GB) gi|225428201|ref|XP_002278951.1| (e_value=3e-46) PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera];; (*SWP) sp|B9HQZ6|SYAP_POPTR (e_value=2e-47) Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1;; (*TAIR) AT5G22800.1 (e_value=8e-45) | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978;; (*ITAG) Solyc01g111990.2.1 (e_value=2e-51) genomic_reference:SL2.40ch01 gene_region:89884444-89893360 transcript_region:SL2.40ch01:89884444..89893360+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** Q9FFC7_ARATH); contains Interpro domain(s) IPR002318 Alanyl-tRNA synthetase, class IIc "; GO:0000049 NbS00004160g0002.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=5e-26) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00011514g0003.1 protein NbS00036245g0001.1 protein NbS00018349g0002.1 protein ; (*GB) gi|147859324|emb|CAN83957.1| (e_value=5e-55) hypothetical protein VITISV_039906 [Vitis vinifera];; (*TAIR) AT4G27010.2 (e_value=3e-32) | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr4:13558943-13568296 FORWARD LENGTH=2402;; (*ITAG) Solyc02g065500.2.1 (e_value=1e-159) genomic_reference:SL2.40ch02 gene_region:31242390-31258151 transcript_region:SL2.40ch02:31242390..31258151- go_terms:GO:0016021 functional_description:"Nucleolar pre-ribosomal-associated protein 1 (AHRD V1 *--- NPA1P_HUMAN)"; GO:0016021 NbS00029112g0001.1 protein NbS00018258g0002.1 protein NbC23991925g0001.1 protein ; (*GB) gi|38096048|gb|AAR10887.1| (e_value=7e-24) inosine-5'-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SA34|IMDH2_ARATH (e_value=4e-23) Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1;; (*TAIR) AT1G16350.1 (e_value=3e-24) | Symbols: | Aldolase-type TIM barrel family protein | chr1:5590951-5592872 FORWARD LENGTH=502;; (*ITAG) Solyc10g079500.1.1 (e_value=1e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60360530-60363081 transcript_region:SL2.40ch10:60360530..60363081+ go_terms:GO:0008152,GO:0055114 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- A7XZM6_CAMSI); contains Interpro domain(s) IPR005990 IMP dehydrogenase "; GO:0008152,GO:0055114 NbS00002316g0001.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=1e-13) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbS00013531g0002.1 protein ; (*GB) gi|94557288|gb|AAY26520.1| (e_value=1e-21) secretory peroxidase [Catharanthus roseus];; (*SWP) sp|Q9SB81|PER42_ARATH (e_value=6e-21) Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2;; (*TAIR) AT4G21960.1 (e_value=4e-22) | Symbols: PRXR1 | Peroxidase superfamily protein | chr4:11646613-11648312 REVERSE LENGTH=330;; (*ITAG) Solyc02g080530.2.1 (e_value=1e-22) genomic_reference:SL2.40ch02 gene_region:39317455-39319147 transcript_region:SL2.40ch02:39317455..39319147- go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** C7DYB2_9ERIC); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00049157g0001.1 protein ; (*GB) gi|75159637|sp|Q8S4R4.1|CRTSO_SOLLC (e_value=6e-35) RecName: Full=Prolycopene isomerase, chloroplastic; Short=CrtISO; AltName: Full=Carotenoid isomerase; AltName: Full=Protein tangerine; Flags: Precursor;; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=2e-36) Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=1 SV=1;; (*TAIR) AT1G06820.1 (e_value=2e-17) | Symbols: CRTISO, CCR2 | carotenoid isomerase | chr1:2093145-2096220 REVERSE LENGTH=595;; (*ITAG) Solyc10g081650.1.1 (e_value=1e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62006972-62011520 transcript_region:SL2.40ch10:62006972..62011520- go_terms:GO:0046608 functional_description:"Carotenoid isomerase, chloroplastic"; GO:0046608 NbS00011377g0001.1 protein NbS00017908g0002.1 protein NbS00008277g0001.1 protein ; (*GB) gi|255538232|ref|XP_002510181.1| (e_value=4e-36) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G52010.1 (e_value=2e-32) | Symbols: | C2H2-like zinc finger protein | chr5:21121626-21122816 REVERSE LENGTH=396; NbS00029721g0001.1 protein ; (*GB) gi|296088354|emb|CBI36799.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g099120.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:81202877-81206378 transcript_region:SL2.40ch01:81202877..81206378+ functional_description:"Protein AUXIN RESPONSE 4 (AHRD V1 ***- AXR4_ARATH)"; NbS00043981g0002.1 protein NbC25411105g0001.1 protein ; (*ITAG) Solyc02g069080.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:33622504-33631103 transcript_region:SL2.40ch02:33622504..33631103- functional_description:"Unknown Protein (AHRD V1)"; NbS00013648g0001.1 protein NbS00013648g0002.1 protein NbC24031148g0001.1 protein NbS00016298g0001.1 protein ; (*ITAG) Solyc08g022200.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:13682252-13682968 transcript_region:SL2.40ch08:13682252..13682968- functional_description:"Polyprotein (AHRD V1 ***- Q0ZLH4_9ORYZ); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00039321g0001.1 protein ; (*GB) gi|356517193|ref|XP_003527273.1| (e_value=1e-66) PREDICTED: monosaccharide-sensing protein 2-like [Glycine max];; (*SWP) sp|Q8LPQ8|MSSP2_ARATH (e_value=2e-61) Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2;; (*TAIR) AT4G35300.5 (e_value=4e-68) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16798332 REVERSE LENGTH=542;; (*ITAG) Solyc04g082700.2.1 (e_value=8e-67) genomic_reference:SL2.40ch04 gene_region:63881553-63887198 transcript_region:SL2.40ch04:63881553..63887198- go_terms:GO:0015519 functional_description:"Solute carrier family 2, facilitated glucose transporter member 12 (AHRD V1 *-*- GTR12_MOUSE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00016194g0002.1 protein NbS00052773g0005.1 protein NbS00020301g0001.1 protein NbS00029799g0001.1 protein NbS00015779g0001.1 protein NbS00015779g0101.1 protein NbS00051446g0001.1 protein NbS00006881g0201.1 protein NbS00041548g0002.1 protein NbS00041548g0003.1 protein NbS00017047g0001.1 protein ; (*GB) gi|224098998|ref|XP_002311348.1| (e_value=3e-51) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6Z4H0|6PGL2_ORYSJ (e_value=5e-44) Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica GN=Os07g0604000 PE=2 SV=1;; (*TAIR) AT1G13700.1 (e_value=6e-45) | Symbols: PGL1 | 6-phosphogluconolactonase 1 | chr1:4694475-4695600 REVERSE LENGTH=268;; (*ITAG) Solyc05g012110.2.1 (e_value=2e-62) genomic_reference:SL2.40ch05 gene_region:5316351-5320016 transcript_region:SL2.40ch05:5316351..5320016- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** Q156I4_MANIN); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00012356g0001.1 protein NbS00006212g0001.1 protein NbS00000235g0001.1 protein NbS00018284g0001.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=1e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc05g039970.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00009385g0006.1 protein NbS00027590g0001.1 protein NbS00046012g0001.1 protein NbS00029274g0004.1 protein ; (*GB) gi|133711804|gb|ABO36622.1| (e_value=3e-17) copia LTR rider [Solanum lycopersicum];; (*ITAG) Solyc01g067050.1.1 (e_value=1e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:67773499-67775375 transcript_region:SL2.40ch01:67773499..67775375- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY3_MEDTR); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00026083g0002.1 protein NbS00006672g0007.1 protein ; (*GB) gi|222632346|gb|EEE64478.1| (e_value=1e-36) hypothetical protein OsJ_19328 [Oryza sativa Japonica Group];; (*SWP) sp|Q42577|NDUS7_ARATH (e_value=2e-36) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1;; (*TAIR) AT5G11770.1 (e_value=1e-37) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=3e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00059875g0001.1 protein NbS00003400g0003.1 protein ; (*GB) gi|225461650|ref|XP_002283115.1| (e_value=6e-95) PREDICTED: uncharacterized protein LOC100267539 [Vitis vinifera];; (*SWP) sp|Q4P0H7|BBP_USTMA (e_value=2e-21) Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=BBP PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=2e-86) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=6e-72) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00015506g0001.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=2e-33) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000382g0001.1 protein NbC26224113g0001.1 protein NbS00002236g0001.1 protein NbS00006493g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=5e-16) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00006493g0002.1 protein ; (*GB) gi|147799024|emb|CAN72567.1| (e_value=2e-20) hypothetical protein VITISV_044177 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=9e-15) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc05g053320.1.1 (e_value=9e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62583300-62583965 transcript_region:SL2.40ch05:62583300..62583965+ go_terms:GO:0008270 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00003449g0001.1 protein ; (*GB) gi|357491047|ref|XP_003615811.1| (e_value=3e-59) Serine carboxypeptidase-like protein [Medicago truncatula];; (*SWP) sp|Q9FH05|SCP42_ARATH (e_value=2e-56) Serine carboxypeptidase-like 42 OS=Arabidopsis thaliana GN=SCPL42 PE=2 SV=1;; (*TAIR) AT5G42240.1 (e_value=1e-57) | Symbols: scpl42 | serine carboxypeptidase-like 42 | chr5:16888717-16890931 FORWARD LENGTH=473;; (*ITAG) Solyc01g104850.2.1 (e_value=1e-71) genomic_reference:SL2.40ch01 gene_region:84939746-84943822 transcript_region:SL2.40ch01:84939746..84943822+ go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase F13S12.6 (AHRD V1 **** B6U5K7_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00003449g0004.1 protein ; (*GB) gi|224130878|ref|XP_002320947.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EBM5|ASPR1_ARATH (e_value=4e-11) Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1;; (*TAIR) AT2G28010.1 (e_value=8e-17) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:11930579-11931769 REVERSE LENGTH=396;; (*ITAG) Solyc01g081350.1.1 (e_value=8e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:73093467-73094768 transcript_region:SL2.40ch01:73093467..73094768- go_terms:GO:0006508 functional_description:"Aspartic proteinase nepenthesin I (AHRD V1 **-- A9ZMF9_NEPAL); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00019773g0101.1 protein NbS00011741g0001.1 protein NbS00011741g0003.1 protein NbS00034451g0003.1 protein NbS00005302g0001.1 protein NbS00025263g0001.1 protein NbS00025263g0003.1 protein NbS00054264g0001.1 protein NbS00002672g0001.1 protein NbS00033013g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00023725g0001.1 protein NbC23949166g0001.1 protein ; (*GB) gi|224107052|ref|XP_002333576.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIB2|PP373_ARATH (e_value=1e-26) Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1;; (*TAIR) AT5G09950.1 (e_value=8e-28) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:3102877-3105864 REVERSE LENGTH=995;; (*ITAG) Solyc07g045510.2.1 (e_value=1e-38) genomic_reference:SL2.40ch07 gene_region:55952757-55956284 transcript_region:SL2.40ch07:55952757..55956284- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2R8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC24151891g0001.1 protein ; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=2e-59) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|P0C1U4|GUN9_ORYSJ (e_value=7e-52) Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1;; (*TAIR) AT5G49720.1 (e_value=3e-45) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc05g005080.2.1 (e_value=2e-64) genomic_reference:SL2.40ch05 gene_region:81292-84268 transcript_region:SL2.40ch05:81292..84268+ go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00021393g0001.1 protein NbS00041152g0001.1 protein NbS00041638g0006.1 protein ; (*GB) gi|255555293|ref|XP_002518683.1| (e_value=3e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G76060.1 (e_value=1e-40) | Symbols: EMB1793 | LYR family of Fe/S cluster biogenesis protein | chr1:28543367-28543840 REVERSE LENGTH=157; NbS00010410g0002.1 protein ; (*GB) gi|224087355|ref|XP_002308133.1| (e_value=1e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT2G07170.1 (e_value=2e-13) | Symbols: | ARM repeat superfamily protein | chr2:2975565-2978692 FORWARD LENGTH=820;; (*ITAG) Solyc07g042580.2.1 (e_value=2e-79) genomic_reference:SL2.40ch07 gene_region:53367985-53373431 transcript_region:SL2.40ch07:53367985..53373431+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00010410g0004.1 protein ; (*GB) gi|255579416|ref|XP_002530552.1| (e_value=2e-81) hypothetical protein RCOM_1267370 [Ricinus communis];; (*TAIR) AT1G54380.1 (e_value=4e-50) | Symbols: | spliceosome protein-related | chr1:20298287-20300899 REVERSE LENGTH=515;; (*ITAG) Solyc09g098560.2.1 (e_value=3e-122) genomic_reference:SL2.40ch09 gene_region:67626581-67634305 transcript_region:SL2.40ch09:67626581..67634305+ go_terms:GO:0000398 functional_description:"Survival motor neuron containing protein (AHRD V1 ***- B6TZU2_MAIZE); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398 NbS00028513g0004.1 protein NbC23474810g0001.1 protein ; (*GB) gi|297746229|emb|CBI16285.3| (e_value=2e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G07970.1 (e_value=4e-18) | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693;; (*ITAG) Solyc11g069170.1.1 (e_value=5e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50878904-50883953 transcript_region:SL2.40ch11:50878904..50883953- functional_description:"Transmembrane protein 209 (AHRD V1 *-*- TM209_MOUSE); contains Interpro domain(s) IPR019176 Cytochrome B561-related, N-terminal "; NbS00006910g0002.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=2e-15) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00019354g0002.1 protein NbS00060020g0002.1 protein ; (*GB) gi|297738378|emb|CBI27579.3| (e_value=7e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|O42945|DHX15_SCHPO (e_value=8e-29) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=2 SV=1;; (*TAIR) AT1G27900.1 (e_value=1e-56) | Symbols: | RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700;; (*ITAG) Solyc05g015040.2.1 (e_value=8e-72) genomic_reference:SL2.40ch05 gene_region:9724620-9743463 transcript_region:SL2.40ch05:9724620..9743463+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00001420g0001.1 protein NbS00018336g0002.1 protein ; (*GB) gi|225428408|ref|XP_002283712.1| (e_value=1e-99) PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q949X7|DCDA1_ARATH (e_value=2e-99) Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1;; (*TAIR) AT3G14390.1 (e_value=2e-100) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484;; (*ITAG) Solyc01g109850.2.1 (e_value=2e-106) genomic_reference:SL2.40ch01 gene_region:88449072-88454711 transcript_region:SL2.40ch01:88449072..88454711- go_terms:GO:0004040,GO:0008836 functional_description:"Diaminopimelate decarboxylase (AHRD V1 **** D2DKE7_SOYBN); contains Interpro domain(s) IPR002986 Diaminopimelate decarboxylase "; GO:0004040,GO:0008836 NbC25800495g0002.1 protein ; (*GB) gi|255559733|ref|XP_002520886.1| (e_value=4e-31) hypothetical protein RCOM_0690150 [Ricinus communis];; (*SWP) sp|Q9FHK4|Y5519_ARATH (e_value=8e-20) Uncharacterized protein At5g05190 OS=Arabidopsis thaliana GN=Y-1 PE=1 SV=1;; (*TAIR) AT5G05190.1 (e_value=6e-21) | Symbols: | Protein of unknown function (DUF3133) | chr5:1541853-1543875 FORWARD LENGTH=615;; (*ITAG) Solyc03g095610.2.1 (e_value=9e-71) genomic_reference:SL2.40ch03 gene_region:50236833-50240242 transcript_region:SL2.40ch03:50236833..50240242+ go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00004581g0003.1 protein NbC23870409g0001.1 protein ; (*ITAG) Solyc10g080350.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00038860g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-14) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00037528g0001.1 protein NbS00032815g0003.1 protein NbS00058484g0001.1 protein NbS00003597g0001.1 protein ; (*GB) gi|225441748|ref|XP_002277555.1| (e_value=1e-35) PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis vinifera];; (*SWP) sp|P15398|RPA1_SCHPO (e_value=1e-23) DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2;; (*TAIR) AT3G57660.1 (e_value=2e-30) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbC23334522g0001.1 protein ; (*GB) gi|255583208|ref|XP_002532369.1| (e_value=3e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G31260.1 (e_value=6e-33) | Symbols: APG9, ATAPG9 | autophagy 9 (APG9) | chr2:13322291-13326293 REVERSE LENGTH=866;; (*ITAG) Solyc04g008630.2.1 (e_value=1e-37) genomic_reference:SL2.40ch04 gene_region:2242377-2248072 transcript_region:SL2.40ch04:2242377..2248072- functional_description:"Autophagy-related protein 9 (AHRD V1 ***- D7FZF2_ECTSI); contains Interpro domain(s) IPR007241 Autophagy-related protein 9 "; NbC25513678g0001.1 protein ; (*GB) gi|225452280|ref|XP_002270990.1| (e_value=3e-41) PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8VYR5|PP351_ARATH (e_value=4e-37) Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1;; (*TAIR) AT4G35850.1 (e_value=3e-38) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16983638-16986681 FORWARD LENGTH=444;; (*ITAG) Solyc01g112020.2.1 (e_value=4e-50) genomic_reference:SL2.40ch01 gene_region:89905974-89912214 transcript_region:SL2.40ch01:89905974..89912214- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7MUM4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00050730g0002.1 protein NbC24597217g0001.1 protein ; (*GB) gi|357468879|ref|XP_003604724.1| (e_value=7e-15) AMP deaminase [Medicago truncatula];; (*SWP) sp|O80452|AMPD_ARATH (e_value=5e-16) AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2;; (*TAIR) AT2G38280.2 (e_value=4e-17) | Symbols: FAC1, ATAMPD | AMP deaminase, putative / myoadenylate deaminase, putative | chr2:16033767-16038793 REVERSE LENGTH=839;; (*ITAG) Solyc09g014770.2.1 (e_value=5e-18) genomic_reference:SL2.40ch09 gene_region:6868580-6881280 transcript_region:SL2.40ch09:6868580..6881280+ go_terms:GO:0009168 functional_description:"AMP deaminase (AHRD V1 ***- D3BRS6_POLPA); contains Interpro domain(s) IPR006329 AMP deaminase "; GO:0009168 NbS00032044g0004.1 protein NbS00013093g0107.1 protein NbS00003275g0004.1 protein NbS00001117g0001.1 protein NbS00011631g0001.1 protein NbS00060985g0001.1 protein NbS00010291g0002.1 protein NbS00041024g0002.1 protein NbS00012304g0001.1 protein ; (*GB) gi|225459405|ref|XP_002284293.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Vitis vinifera];; (*SWP) sp|Q0WNP3|PP319_ARATH (e_value=7e-161) Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1;; (*TAIR) AT4G18520.1 (e_value=6e-162) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10215250-10217103 REVERSE LENGTH=617;; (*ITAG) Solyc07g062820.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62696420-62698273 transcript_region:SL2.40ch07:62696420..62698273+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein PPR1106-17 (AHRD V1 ***- B6SWY6_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00015248g0002.1 protein NbS00015248g0003.1 protein NbS00017481g0002.1 protein ; (*GB) gi|357500333|ref|XP_003620455.1| (e_value=9e-41) Peptidyl-prolyl cis-trans isomerase-like protein [Medicago truncatula];; (*SWP) sp|Q4WAQ9|PPIL4_ASPFU (e_value=2e-34) Peptidyl-prolyl cis-trans isomerase-like 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cyp6 PE=3 SV=1;; (*TAIR) AT1G53720.1 (e_value=4e-43) | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20057012-20059508 FORWARD LENGTH=506;; (*ITAG) Solyc07g066420.2.1 (e_value=2e-45) genomic_reference:SL2.40ch07 gene_region:65076198-65085928 transcript_region:SL2.40ch07:65076198..65085928+ go_terms:GO:0003676,GO:0006457,GO:0008270,GO:0000166 functional_description:"Peptidyl-prolyl cis-trans isomerase-like protein (AHRD V1 *-*- D0NAF5_PHYIN); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003676,GO:0006457,GO:0008270,GO:0000166 NbS00024464g0103.1 protein NbS00037188g0104.1 protein NbS00030449g0004.1 protein NbS00010099g0004.1 protein NbS00010099g0005.1 protein NbS00032231g0001.1 protein NbS00034303g0001.1 protein NbS00020144g0001.1 protein ; (*GB) gi|357511469|ref|XP_003626023.1| (e_value=6e-19) Replication factor A protein [Medicago truncatula];; (*TAIR) AT2G05642.1 (e_value=5e-15) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:2098253-2100867 REVERSE LENGTH=532;; (*ITAG) Solyc00g172410.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:18067959-18070197 transcript_region:SL2.40ch00:18067959..18070197- functional_description:"DNA binding protein-like (AHRD V1 *--- Q6Z4I5_ORYSJ); contains Interpro domain(s) IPR012340 Nucleic acid-binding, OB-fold "; NbS00035394g0001.1 protein ; (*ITAG) Solyc12g088480.1.1 (e_value=5e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62274635-62277005 transcript_region:SL2.40ch12:62274635..62277005+ functional_description:"Cell division cycle associated 7 (AHRD V1 ***- Q28DP7_XENTR); contains Interpro domain(s) IPR018866 Cell division cycle-associated protein "; NbS00035394g0002.1 protein NbS00029016g0002.1 protein NbS00010872g0201.1 protein NbS00016430g0002.1 protein NbS00009886g0001.1 protein ; (*GB) gi|224081515|ref|XP_002306441.1| (e_value=1e-64) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35690.1 (e_value=5e-36) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr4:16921886-16922740 FORWARD LENGTH=284;; (*ITAG) Solyc02g083090.1.1 (e_value=3e-137) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41201725-41202534 transcript_region:SL2.40ch02:41201725..41202534+ functional_description:"CM0216.330.nc protein (AHRD V1 ***- B0BLI1_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbC23627629g0001.1 protein ; (*GB) gi|149941647|dbj|BAF64845.1| (e_value=1e-41) Cdc27B [Nicotiana tabacum];; (*SWP) sp|Q8LGU6|CD27B_ARATH (e_value=6e-33) Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1;; (*TAIR) AT2G20000.1 (e_value=4e-34) | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744;; (*ITAG) Solyc03g061600.2.1 (e_value=1e-41) genomic_reference:SL2.40ch03 gene_region:27838220-27847083 transcript_region:SL2.40ch03:27838220..27847083+ go_terms:GO:0005515 functional_description:"Cell division cycle protein 27/anaphase promoting complex subunit 3 (AHRD V1 *--- A8NH71_COPC7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515 NbC25546362g0001.1 protein ; (*GB) gi|225439408|ref|XP_002263824.1| (e_value=3e-20) PREDICTED: uncharacterized protein LOC100257563 [Vitis vinifera];; (*TAIR) AT5G05570.2 (e_value=5e-19) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc09g005600.2.1 (e_value=2e-37) genomic_reference:SL2.40ch09 gene_region:406341-420961 transcript_region:SL2.40ch09:406341..420961- go_terms:GO:0000166 functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 *--- L2GL2_PONAB); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbC23755371g0001.1 protein ; (*TAIR) AT5G54830.1 (e_value=5e-13) | Symbols: | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein | chr5:22273394-22276117 FORWARD LENGTH=907;; (*ITAG) Solyc06g065720.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37551492-37554197 transcript_region:SL2.40ch06:37551492..37554197+ go_terms:GO:0004497 functional_description:"DOMON domain-containing protein (AHRD V1 **-- D7MUW8_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0004497 NbS00025936g0001.1 protein ; (*GB) gi|255563546|ref|XP_002522775.1| (e_value=9e-47) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LVQ5|PP432_ARATH (e_value=3e-45) Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2;; (*TAIR) AT5G55840.1 (e_value=2e-46) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22598038-22601688 FORWARD LENGTH=1136;; (*ITAG) Solyc03g007390.2.1 (e_value=5e-30) genomic_reference:SL2.40ch03 gene_region:1934183-1937655 transcript_region:SL2.40ch03:1934183..1937655+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ML46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006853g0001.1 protein NbC23285584g0001.1 protein ; (*GB) gi|357494755|ref|XP_003617666.1| (e_value=1e-14) FtsZ protein [Medicago truncatula];; (*TAIR) AT5G55280.1 (e_value=5e-15) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=7e-17) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00034050g0002.1 protein NbS00041110g0001.1 protein ; (*GB) gi|225436140|ref|XP_002275098.1| (e_value=4e-41) PREDICTED: BEL1-like homeodomain protein 1 [Vitis vinifera];; (*ITAG) Solyc11g068950.1.1 (e_value=7e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50583105-50587838 transcript_region:SL2.40ch11:50583105..50587838- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00041110g0002.1 protein NbS00024480g0001.1 protein NbS00045619g0001.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00001012g0003.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-26) hypothetical protein [Nicotiana tabacum]; NbS00035694g0001.1 protein NbS00001274g0102.1 protein NbC23214512g0001.1 protein ; (*GB) gi|224102121|ref|XP_002312555.1| (e_value=1e-17) argonaute protein group [Populus trichocarpa];; (*SWP) sp|Q9XGW1|AGO10_ARATH (e_value=7e-18) Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1;; (*TAIR) AT5G43810.2 (e_value=5e-19) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc09g082830.2.1 (e_value=2e-23) genomic_reference:SL2.40ch09 gene_region:63888767-63895211 transcript_region:SL2.40ch09:63888767..63895211- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00028040g0004.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-12) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00011498g0002.1 protein ; (*GB) gi|10798894|gb|AAG23130.1| (e_value=2e-77) diacylglycerol kinase variant A [Solanum lycopersicum];; (*TAIR) AT2G20900.2 (e_value=6e-67) | Symbols: DGK5, ATDGK5 | diacylglycerol kinase 5 | chr2:8989794-8992798 REVERSE LENGTH=491;; (*ITAG) Solyc07g054830.2.1 (e_value=6e-77) genomic_reference:SL2.40ch07 gene_region:60323756-60334401 transcript_region:SL2.40ch07:60323756..60334401- go_terms:GO:0004143 functional_description:"Diacylglycerol kinase (AHRD V1 **** Q9FVD1_SOLLC); contains Interpro domain(s) IPR016961 Diacylglycerol kinase, plant "; GO:0004143 NbS00003160g0001.1 protein ; (*GB) gi|297738085|emb|CBI27286.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZD4|PPR59_ARATH (e_value=2e-170) Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1;; (*TAIR) AT1G26500.1 (e_value=1e-171) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:9158380-9159897 FORWARD LENGTH=505;; (*ITAG) Solyc01g097130.2.1 (e_value=8e-64) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000994g0102.1 protein NbS00025812g0002.1 protein NbS00014384g0002.1 protein NbS00014384g0003.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022910g0001.1 protein NbS00029925g0002.1 protein ; (*GB) gi|147826806|emb|CAN63950.1| (e_value=5e-18) hypothetical protein VITISV_032357 [Vitis vinifera]; NbS00039793g0001.1 protein NbS00008195g0001.1 protein NbS00002282g0003.1 protein ; (*GB) gi|29839371|sp|Q8RX97.1|FRI1_TOBAC (e_value=9e-43) RecName: Full=Ferritin-1, chloroplastic; AltName: Full=NtFer1; Flags: Precursor;; (*SWP) sp|Q8RX97|FRI1_TOBAC (e_value=3e-44) Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1;; (*TAIR) AT3G11050.1 (e_value=2e-22) | Symbols: ATFER2, FER2 | ferritin 2 | chr3:3463651-3465294 FORWARD LENGTH=253;; (*ITAG) Solyc06g050980.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:30550363-30552503 transcript_region:SL2.40ch06:30550363..30552503+ go_terms:GO:0008198,GO:0042802 functional_description:"Ferritin (AHRD V1 ***- Q308A9_SOLTU); contains Interpro domain(s) IPR001519 Ferritin, N-terminal "; GO:0008198,GO:0042802 NbS00009751g0004.1 protein ; (*GB) gi|225466169|ref|XP_002263918.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100261489 [Vitis vinifera];; (*ITAG) Solyc02g036460.2.1 (e_value=8e-64) genomic_reference:SL2.40ch02 gene_region:21511925-21514050 transcript_region:SL2.40ch02:21511925..21514050+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010983g0103.1 protein NbS00010983g0104.1 protein NbS00010983g0105.1 protein NbS00010983g0106.1 protein NbS00009894g0004.1 protein NbS00011454g0001.1 protein NbS00006702g0001.1 protein ; (*GB) gi|224104145|ref|XP_002313336.1| (e_value=4e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SYD6|MATE1_ARATH (e_value=2e-21) MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2;; (*TAIR) AT1G51340.1 (e_value=1e-22) | Symbols: | MATE efflux family protein | chr1:19032034-19034681 FORWARD LENGTH=509;; (*ITAG) Solyc01g008420.2.1 (e_value=3e-56) genomic_reference:SL2.40ch01 gene_region:2504346-2512080 transcript_region:SL2.40ch01:2504346..2512080+ go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00016393g0001.1 protein NbS00013597g0001.1 protein NbS00001759g0101.1 protein NbS00001759g0102.1 protein NbS00025633g0001.1 protein NbS00001978g0001.1 protein NbS00001978g0003.1 protein NbS00040603g0001.1 protein NbS00006984g0002.1 protein NbS00006984g0004.1 protein NbS00007602g0002.1 protein NbS00037058g0001.1 protein NbS00017881g0004.1 protein NbS00025542g0001.1 protein NbC25922648g0001.1 protein ; (*TAIR) AT1G20960.2 (e_value=6e-14) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=3e-16) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00005932g0001.1 protein NbS00005932g0004.1 protein NbC24188352g0001.1 protein ; (*ITAG) Solyc01g099360.2.1 (e_value=4e-45) genomic_reference:SL2.40ch01 gene_region:81405479-81417163 transcript_region:SL2.40ch01:81405479..81417163+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L3U3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00043297g0001.1 protein NbS00010168g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00012100g0001.1 protein NbS00056934g0001.1 protein ; (*GB) gi|147800371|emb|CAN70930.1| (e_value=3e-73) hypothetical protein VITISV_000387 [Vitis vinifera];; (*SWP) sp|Q9LUL5|PP229_ARATH (e_value=2e-61) Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2;; (*TAIR) AT3G14330.1 (e_value=1e-62) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:4779688-4782451 REVERSE LENGTH=710;; (*ITAG) Solyc11g011860.1.1 (e_value=1e-111) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4809870-4811810 transcript_region:SL2.40ch11:4809870..4811810+ go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L337_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00006704g0001.1 protein NbS00006704g0202.1 protein NbS00018177g0001.1 protein NbS00017135g0002.1 protein ; (*GB) gi|255546473|ref|XP_002514296.1| (e_value=6e-60) site-1 protease, putative [Ricinus communis];; (*TAIR) AT5G19660.1 (e_value=4e-50) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=2e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019223g0001.1 protein ; (*ITAG) Solyc01g005110.2.1 (e_value=6e-19) genomic_reference:SL2.40ch01 gene_region:102188-103191 transcript_region:SL2.40ch01:102188..103191+ functional_description:"cDNA clone J065210E11 full insert sequence (AHRD V1 **-- B7F922_ORYSJ); contains Interpro domain(s) IPR013174 Dolichol-phosphate mannosyltransferase subunit 3 "; NbS00019223g0003.1 protein NbS00014166g0003.1 protein NbS00014166g0004.1 protein ; (*GB) gi|356498456|ref|XP_003518068.1| (e_value=1e-34) PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like, partial [Glycine max];; (*SWP) sp|Q84VG6|PP160_ARATH (e_value=6e-25) Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2;; (*TAIR) AT2G17525.1 (e_value=4e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7624178-7626058 FORWARD LENGTH=626;; (*ITAG) Solyc09g061760.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:55904414-55906300 transcript_region:SL2.40ch09:55904414..55906300+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS33_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014166g0101.1 protein NbS00004388g0003.1 protein ; (*GB) gi|77416933|gb|ABA81862.1| (e_value=3e-37) unknown [Solanum tuberosum];; (*SWP) sp|Q43291|RL211_ARATH (e_value=8e-35) 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2;; (*TAIR) AT1G09690.1 (e_value=6e-36) | Symbols: | Translation protein SH3-like family protein | chr1:3136407-3137430 REVERSE LENGTH=164;; (*ITAG) Solyc10g078960.1.1 (e_value=8e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59923974-59925902 transcript_region:SL2.40ch10:59923974..59925902- go_terms:GO:0005840 functional_description:"60S ribosomal protein L21-like protein (AHRD V1 ***- Q3HVK5_SOLTU); contains Interpro domain(s) IPR001147 Ribosomal protein L21e "; GO:0005840 NbS00004388g0007.1 protein NbS00004888g0101.1 protein NbS00030213g0002.1 protein NbS00030213g0004.1 protein ; (*GB) gi|359486385|ref|XP_002273190.2| (e_value=8e-77) PREDICTED: uncharacterized protein LOC100243292 [Vitis vinifera];; (*TAIR) AT5G05500.1 (e_value=2e-66) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:1629716-1630267 FORWARD LENGTH=183;; (*ITAG) Solyc05g052500.2.1 (e_value=9e-76) genomic_reference:SL2.40ch05 gene_region:61857465-61864807 transcript_region:SL2.40ch05:61857465..61864807+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00002425g0003.1 protein ; (*GB) gi|255539571|ref|XP_002510850.1| (e_value=5e-39) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G62140.1 (e_value=9e-36) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:24954563-24955376 REVERSE LENGTH=241; NbS00025450g0003.1 protein NbS00025450g0004.1 protein ; (*GB) gi|255564107|ref|XP_002523051.1| (e_value=6e-14) conserved hypothetical protein [Ricinus communis]; NbS00003026g0006.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-15) hypothetical protein [Cucumis melo subsp. melo]; NbS00001184g0003.1 protein NbS00017262g0001.1 protein NbS00015595g0101.1 protein NbC25534353g0001.1 protein ; (*GB) gi|297738658|emb|CBI27903.3| (e_value=1e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G29750.1 (e_value=2e-22) | Symbols: | CRS1 / YhbY (CRM) domain-containing protein | chr4:14569728-14572962 FORWARD LENGTH=841;; (*ITAG) Solyc07g039500.2.1 (e_value=6e-81) genomic_reference:SL2.40ch07 gene_region:44930650-44935280 transcript_region:SL2.40ch07:44930650..44935280+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK64_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00016387g0001.1 protein ; (*GB) gi|45476407|dbj|BAD12556.1| (e_value=2e-41) RIO kinase [Nicotiana tabacum];; (*TAIR) AT5G37350.1 (e_value=2e-24) | Symbols: | Serine/threonine-protein kinase Rio1 | chr5:14793037-14795828 FORWARD LENGTH=531;; (*ITAG) Solyc08g080850.2.1 (e_value=5e-35) genomic_reference:SL2.40ch08 gene_region:61201523-61207660 transcript_region:SL2.40ch08:61201523..61207660+ go_terms:GO:0004672 functional_description:"Serine/threonine-protein kinase RIO1 (AHRD V1 **** Q75XU7_TOBAC); contains Interpro domain(s) IPR017407 Serine/threonine-protein kinase Rio1 "; GO:0004672 NbS00007286g0001.1 protein ; (*GB) gi|359482417|ref|XP_002272396.2| (e_value=1e-51) PREDICTED: exocyst complex component 7-like [Vitis vinifera];; (*TAIR) AT3G14090.1 (e_value=1e-42) | Symbols: ATEXO70D3, EXO70D3 | exocyst subunit exo70 family protein D3 | chr3:4669508-4671379 REVERSE LENGTH=623;; (*ITAG) Solyc03g122240.2.1 (e_value=8e-80) genomic_reference:SL2.40ch03 gene_region:64181626-64184025 transcript_region:SL2.40ch03:64181626..64184025+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbC23933293g0001.1 protein ; (*GB) gi|147835239|emb|CAN67792.1| (e_value=4e-25) hypothetical protein VITISV_001313 [Vitis vinifera]; NbS00006399g0004.1 protein NbS00015751g0007.1 protein NbS00015751g0008.1 protein NbS00021839g0001.1 protein NbS00023638g0002.1 protein NbS00001892g0003.1 protein NbS00001892g0005.1 protein NbS00001892g0008.1 protein NbS00002719g0001.1 protein NbS00004521g0001.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=3e-27) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*SWP) sp|Q9LPD2|GENL1_ARATH (e_value=1e-20) Flap endonuclease GEN-like 1 OS=Arabidopsis thaliana GN=GEN1 PE=2 SV=3;; (*TAIR) AT1G01090.1 (e_value=2e-29) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc01g091820.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:77129836-77135609 transcript_region:SL2.40ch01:77129836..77135609- go_terms:GO:0048256,GO:0003697,GO:0003690 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-** D7DTU0_METV3); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0048256,GO:0003697,GO:0003690 NbS00013057g0001.1 protein ; (*GB) gi|224092057|ref|XP_002309456.1| (e_value=3e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT2G26280.1 (e_value=4e-25) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=6e-57) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbS00049042g0003.1 protein NbC23207800g0001.1 protein ; (*GB) gi|149928246|ref|ZP_01916490.1| (e_value=1e-30) succinyl-CoA synthetase alpha subunit [Limnobacter sp. MED105];; (*SWP) sp|P09143|SUCD_THETH (e_value=1e-23) Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1;; (*TAIR) AT5G23250.2 (e_value=3e-16) | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832265 FORWARD LENGTH=297;; (*ITAG) Solyc01g007910.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:2104967-2112735 transcript_region:SL2.40ch01:2104967..2112735+ go_terms:GO:0008152 functional_description:"Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit "; GO:0008152 NbS00034810g0002.1 protein NbC25978713g0001.1 protein ; (*GB) gi|365222868|gb|AEW69786.1| (e_value=3e-28) Hop-interacting protein THI143 [Solanum lycopersicum];; (*TAIR) AT4G10630.1 (e_value=3e-15) | Symbols: | Glutaredoxin family protein | chr4:6566625-6567629 REVERSE LENGTH=334;; (*ITAG) Solyc08g083270.1.1 (e_value=6e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62941814-62942797 transcript_region:SL2.40ch08:62941814..62942797+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LYR1_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00001160g0001.1 protein ; (*GB) gi|302767372|ref|XP_002967106.1| (e_value=6e-16) hypothetical protein SELMODRAFT_87413 [Selaginella moellendorffii];; (*ITAG) Solyc04g076750.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00004947g0002.1 protein ; (*GB) gi|3122572|sp|Q43644.1|NDUS1_SOLTU (e_value=2e-143) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; AltName: Full=76 kDa mitochondrial complex I subunit; AltName: Full=Complex I-76kD; Short=CI-76kD; AltName: Full=NADH-ubiquinone oxidoreductase 76 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43644|NDUS1_SOLTU (e_value=7e-145) NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G37510.1 (e_value=4e-113) | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897490-14900352 FORWARD LENGTH=745;; (*ITAG) Solyc11g011470.1.1 (e_value=3e-144) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4520459-4526103 transcript_region:SL2.40ch11:4520459..4526103- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 ***- B9T118_RICCO); contains Interpro domain(s) IPR010228 NADH:ubiquinone oxidoreductase, subunit G "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbS00008503g0001.1 protein ; (*GB) gi|224061609|ref|XP_002300565.1| (e_value=2e-56) hypothetical protein POPTRDRAFT_177484 [Populus trichocarpa];; (*SWP) sp|Q9C5Q8|HEN1_ARATH (e_value=9e-47) Small RNA 2'-O-methyltransferase OS=Arabidopsis thaliana GN=HEN1 PE=1 SV=1;; (*TAIR) AT4G20910.2 (e_value=7e-48) | Symbols: HEN1 | double-stranded RNA binding protein-related / DsRBD protein-related | chr4:11186264-11190575 REVERSE LENGTH=942;; (*ITAG) Solyc02g070030.2.1 (e_value=3e-78) genomic_reference:SL2.40ch02 gene_region:34394425-34403033 transcript_region:SL2.40ch02:34394425..34403033- go_terms:GO:0005622 functional_description:"Methyltransferase type 12 (AHRD V1 *-*- D3Q922_STANL); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0005622 NbS00047416g0001.1 protein ; (*GB) gi|224089118|ref|XP_002308640.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11340.1 (e_value=2e-23) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr5:3619226-3621068 FORWARD LENGTH=164;; (*ITAG) Solyc06g065570.2.1 (e_value=1e-28) genomic_reference:SL2.40ch06 gene_region:37352391-37356280 transcript_region:SL2.40ch06:37352391..37356280- go_terms:GO:0005515 functional_description:"N-acetyltransferase (AHRD V1 ***- Q1HQ22_BOMMO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0005515 NbS00030526g0001.1 protein ; (*ITAG) Solyc03g120360.1.1 (e_value=2e-91) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62843471-62850190 transcript_region:SL2.40ch03:62843471..62850190+ functional_description:"Phospholipase like protein (AHRD V1 *--- Q9SZN4_ARATH); contains Interpro domain(s) IPR007942 Phospholipase-like, arabidopsis "; NbS00030526g0003.1 protein NbC24525610g0001.1 protein ; (*GB) gi|218193623|gb|EEC76050.1| (e_value=2e-57) hypothetical protein OsI_13244 [Oryza sativa Indica Group];; (*SWP) sp|Q0J3D9|COPA3_ORYSJ (e_value=3e-58) Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1;; (*TAIR) AT1G62020.1 (e_value=4e-58) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc07g032100.2.1 (e_value=2e-60) genomic_reference:SL2.40ch07 gene_region:34994261-35003424 transcript_region:SL2.40ch07:34994261..35003424+ go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00026059g0002.1 protein NbS00008745g0102.1 protein NbS00044519g0006.1 protein NbS00047966g0001.1 protein ; (*GB) gi|356557849|ref|XP_003547223.1| (e_value=7e-20) PREDICTED: LOW QUALITY PROTEIN: sugar transporter ERD6-like 16-like [Glycine max];; (*SWP) sp|Q94CI7|EDL17_ARATH (e_value=1e-15) Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2;; (*TAIR) AT3G05400.2 (e_value=4e-17) | Symbols: | Major facilitator superfamily protein | chr3:1549702-1553942 FORWARD LENGTH=442;; (*ITAG) Solyc01g098500.2.1 (e_value=5e-44) genomic_reference:SL2.40ch01 gene_region:80767246-80771459 transcript_region:SL2.40ch01:80767246..80771459+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00000959g0003.1 protein NbS00057507g0001.1 protein NbC23856951g0001.1 protein ; (*GB) gi|224128678|ref|XP_002329063.1| (e_value=3e-39) aminophospholipid ATPase [Populus trichocarpa];; (*SWP) sp|Q9LVK9|ALA7_ARATH (e_value=1e-40) Putative phospholipid-transporting ATPase 7 OS=Arabidopsis thaliana GN=ALA7 PE=2 SV=3;; (*TAIR) AT3G13900.1 (e_value=8e-42) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:4586151-4590681 FORWARD LENGTH=1243;; (*ITAG) Solyc03g121810.2.1 (e_value=5e-43) genomic_reference:SL2.40ch03 gene_region:63905200-63910005 transcript_region:SL2.40ch03:63905200..63910005+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase 1 (AHRD V1 **** C5FPS3_NANOT); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00002410g0006.1 protein NbS00002410g0007.1 protein NbS00002410g0008.1 protein NbS00028091g0001.1 protein NbS00040091g0001.1 protein NbS00035710g0002.1 protein ; (*GB) gi|255571736|ref|XP_002526811.1| (e_value=3e-28) protein with unknown function [Ricinus communis];; (*ITAG) Solyc11g020770.1.1 (e_value=9e-82) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:11980206-11988202 transcript_region:SL2.40ch11:11980206..11988202+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015599g0001.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=1e-54) conserved hypothetical protein [Ricinus communis]; NbS00059451g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-26) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=1e-12) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426; NbS00007476g0003.1 protein NbS00009356g0002.1 protein NbS00009356g0101.1 protein NbS00030590g0002.1 protein NbS00058771g0001.1 protein NbS00058771g0003.1 protein NbS00049673g0001.1 protein NbS00050256g0001.1 protein NbS00004792g0004.1 protein NbS00057191g0001.1 protein ; (*ITAG) Solyc04g008880.2.1 (e_value=3e-14) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00043821g0001.1 protein ; (*GB) gi|147816091|emb|CAN72890.1| (e_value=3e-38) hypothetical protein VITISV_022310 [Vitis vinifera];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=4e-27) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=3e-28) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=7e-44) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00034864g0001.1 protein ; (*GB) gi|1762130|gb|AAB39827.1| (e_value=8e-63) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|Q9LJE4|CPNB2_ARATH (e_value=4e-63) Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1;; (*TAIR) AT3G13470.1 (e_value=3e-64) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=1e-65) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00021879g0001.1 protein ; (*GB) gi|225424843|ref|XP_002268561.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100265642 [Vitis vinifera];; (*TAIR) AT1G10385.1 (e_value=6e-27) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc04g005850.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:542180-545744 transcript_region:SL2.40ch04:542180..545744+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN92_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00039273g0002.1 protein NbC25635237g0001.1 protein ; (*GB) gi|359494619|ref|XP_003634816.1| (e_value=1e-37) PREDICTED: protein strawberry notch-like [Vitis vinifera];; (*TAIR) AT1G79350.1 (e_value=2e-27) | Symbols: EMB1135 | RING/FYVE/PHD zinc finger superfamily protein | chr1:29844829-29853215 REVERSE LENGTH=1295;; (*ITAG) Solyc10g005490.2.1 (e_value=4e-47) genomic_reference:SL2.40ch10 gene_region:385399-413211 transcript_region:SL2.40ch10:385399..413211- go_terms:GO:0016564 functional_description:"Protein strawberry notch homolog 1 (AHRD V1 *-*- SBNO1_CHICK); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0016564 NbS00015112g0001.1 protein NbS00005804g0002.1 protein ; (*GB) gi|255575247|ref|XP_002528527.1| (e_value=1e-26) auxin:hydrogen symporter, putative [Ricinus communis];; (*TAIR) AT1G76520.2 (e_value=2e-26) | Symbols: | Auxin efflux carrier family protein | chr1:28715384-28717289 FORWARD LENGTH=390;; (*ITAG) Solyc02g037550.2.1 (e_value=4e-36) genomic_reference:SL2.40ch02 gene_region:21802644-21806318 transcript_region:SL2.40ch02:21802644..21806318- go_terms:GO:0009672 functional_description:"Auxin efflux carrier family protein (AHRD V1 **** D7KJ74_ARALY); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbC24505368g0001.1 protein ; (*GB) gi|325516250|gb|ADZ24703.1| (e_value=5e-27) tyrosine aminotransferase 2 [Solanum pennellii];; (*SWP) sp|Q9LVY1|TAT_ARATH (e_value=6e-18) Tyrosine aminotransferase OS=Arabidopsis thaliana GN=TAT PE=2 SV=1;; (*TAIR) AT5G36160.1 (e_value=5e-19) | Symbols: | Tyrosine transaminase family protein | chr5:14233261-14235129 REVERSE LENGTH=420;; (*ITAG) Solyc07g053720.2.1 (e_value=3e-28) genomic_reference:SL2.40ch07 gene_region:59464896-59468538 transcript_region:SL2.40ch07:59464896..59468538- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase-like protein (AHRD V1 **** Q9LVY1_ARATH); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00015145g0001.1 protein ; (*GB) gi|7271222|emb|CAB81558.1| (e_value=2e-35) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=1e-19) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT3G11520.1 (e_value=2e-18) | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:3625475-3627139 REVERSE LENGTH=414;; (*ITAG) Solyc01g009040.2.1 (e_value=6e-33) genomic_reference:SL2.40ch01 gene_region:3041736-3044740 transcript_region:SL2.40ch01:3041736..3044740+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbC24116914g0001.1 protein ; (*GB) gi|225456828|ref|XP_002278591.1| (e_value=2e-48) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Vitis vinifera];; (*SWP) sp|Q7ZVZ7|F108C_DANRE (e_value=6e-24) Abhydrolase domain-containing protein FAM108C1 OS=Danio rerio GN=fam108c1 PE=2 SV=1;; (*TAIR) AT4G24760.1 (e_value=4e-49) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:12761482-12763564 REVERSE LENGTH=365;; (*ITAG) Solyc03g111770.2.1 (e_value=1e-50) genomic_reference:SL2.40ch03 gene_region:56452663-56457279 transcript_region:SL2.40ch03:56452663..56457279- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00005575g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00044907g0001.1 protein ; (*GB) gi|296090366|emb|CBI40185.3| (e_value=4e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10530.1 (e_value=2e-28) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:3286277-3288670 FORWARD LENGTH=536;; (*ITAG) Solyc05g008190.2.1 (e_value=8e-32) genomic_reference:SL2.40ch05 gene_region:2575652-2581304 transcript_region:SL2.40ch05:2575652..2581304- go_terms:GO:0030515,GO:0005515 functional_description:"WD repeat protein 46 (AHRD V1 **-- B0W308_CULQU); contains Interpro domain(s) IPR012952 BING4, C-terminal "; GO:0030515,GO:0005515 NbS00038647g0002.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00038647g0004.1 protein NbS00038647g0007.1 protein NbS00004394g0001.1 protein NbC25338748g0001.1 protein ; (*GB) gi|161788876|dbj|BAF95072.1| (e_value=3e-38) voltage-dependent anion channel [Nicotiana tabacum];; (*SWP) sp|P42055|VDAC1_SOLTU (e_value=2e-37) Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT5G15090.2 (e_value=1e-28) | Symbols: VDAC3 | voltage dependent anion channel 3 | chr5:4889641-4891389 REVERSE LENGTH=274;; (*ITAG) Solyc02g067460.2.1 (e_value=1e-38) genomic_reference:SL2.40ch02 gene_region:32236994-32239690 transcript_region:SL2.40ch02:32236994..32239690+ go_terms:GO:0005515,GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** A9P802_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0005515,GO:0008308 NbS00009171g0005.1 protein ; (*GB) gi|33667912|gb|AAQ24535.1| (e_value=2e-47) MYST-type acetyltransferase [Solanum chacoense];; (*SWP) sp|Q9LXD7|MYST2_ARATH (e_value=1e-21) MYST-like histone acetyltransferase 2 OS=Arabidopsis thaliana GN=HAG5 PE=2 SV=1;; (*TAIR) AT5G09740.1 (e_value=8e-23) | Symbols: HAM2 | histone acetyltransferase of the MYST family 2 | chr5:3022141-3024711 REVERSE LENGTH=445;; (*ITAG) Solyc11g013520.1.1 (e_value=4e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:6585029-6595031 transcript_region:SL2.40ch11:6585029..6595031- go_terms:GO:0046972 functional_description:"Histone acetyltransferase (AHRD V1 **** B9H794_POPTR); contains Interpro domain(s) IPR002717 MOZ/SAS-like protein "; GO:0046972 NbS00018488g0001.1 protein NbS00012327g0001.1 protein NbC23417273g0001.1 protein ; (*GB) gi|356563188|ref|XP_003549846.1| (e_value=3e-31) PREDICTED: nucleolar protein 56-like [Glycine max];; (*SWP) sp|O94514|NOP56_SCHPO (e_value=2e-24) Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=2 SV=1;; (*TAIR) AT3G12860.1 (e_value=1e-32) | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:4091678-4093921 FORWARD LENGTH=499;; (*ITAG) Solyc01g100570.2.1 (e_value=9e-37) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbC24097126g0001.1 protein ; (*GB) gi|356560736|ref|XP_003548644.1| (e_value=5e-58) PREDICTED: probable polygalacturonase-like [Glycine max];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=1e-55) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT3G61490.3 (e_value=9e-59) | Symbols: | Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476;; (*ITAG) Solyc05g049980.2.1 (e_value=1e-66) genomic_reference:SL2.40ch05 gene_region:58969697-58973289 transcript_region:SL2.40ch05:58969697..58973289- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00017204g0001.1 protein NbS00006770g0002.1 protein ; (*GB) gi|225441337|ref|XP_002274541.1| (e_value=5e-37) PREDICTED: uncharacterized protein LOC100260688 [Vitis vinifera];; (*SWP) sp|P49637|R27A3_ARATH (e_value=1e-17) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT3G57170.1 (e_value=3e-17) | Symbols: | N-acetylglucosaminyl transferase component family protein / Gpi1 family protein | chr3:21159620-21162259 REVERSE LENGTH=560;; (*ITAG) Solyc04g017700.2.1 (e_value=2e-84) genomic_reference:SL2.40ch04 gene_region:7768414-7774996 transcript_region:SL2.40ch04:7768414..7774996- go_terms:GO:0016021 functional_description:"N-acetylglucosaminyl transferase component Gpi1 (AHRD V1 *--- C5FLP9_NANOT); contains Interpro domain(s) IPR007720 N-acetylglucosaminyl transferase component "; GO:0016021 NbS00006770g0003.1 protein NbS00006770g0004.1 protein ; (*GB) gi|296084568|emb|CBI25589.3| (e_value=2e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|O94316|SN114_SCHPO (e_value=1e-31) Pre-mRNA-splicing factor cwf10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf10 PE=1 SV=1;; (*TAIR) AT1G06220.1 (e_value=6e-56) | Symbols: MEE5, CLO, GFA1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:1900524-1904583 FORWARD LENGTH=987;; (*ITAG) Solyc07g007210.2.1 (e_value=4e-67) genomic_reference:SL2.40ch07 gene_region:1950540-1956871 transcript_region:SL2.40ch07:1950540..1956871+ go_terms:GO:0005515,GO:0003746 functional_description:"Elongation factor like protein (AHRD V1 **** Q9LNC5_ARATH); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0005515,GO:0003746 NbS00015992g0001.1 protein ; (*TAIR) AT5G55920.1 (e_value=6e-14) | Symbols: OLI2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22645742-22649383 REVERSE LENGTH=682;; (*ITAG) Solyc07g052110.2.1 (e_value=6e-17) genomic_reference:SL2.40ch07 gene_region:57978811-57988010 transcript_region:SL2.40ch07:57978811..57988010+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p "; GO:0006364 NbS00006798g0002.1 protein NbS00014045g0001.1 protein NbS00000087g0003.1 protein NbS00002975g0003.1 protein NbS00025267g0002.1 protein NbS00003878g0002.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-18) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc09g020160.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:18827013-18830900 transcript_region:SL2.40ch09:18827013..18830900+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC23747605g0001.1 protein ; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=1e-21) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=4e-23) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=1e-22) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062190.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46162597-46164224 transcript_region:SL2.40ch11:46162597..46164224+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00008402g0004.1 protein NbS00008402g0005.1 protein ; (*GB) gi|255548551|ref|XP_002515332.1| (e_value=4e-16) conserved hypothetical protein [Ricinus communis]; NbS00044039g0001.1 protein NbS00021236g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-18) hypothetical protein [Nicotiana tabacum]; NbS00024144g0002.1 protein NbS00024144g0003.1 protein NbS00024144g0004.1 protein NbS00021430g0001.1 protein NbS00032709g0001.1 protein ; (*GB) gi|374277614|gb|AEZ03720.1| (e_value=3e-16) hypothetical protein (mitochondrion) [Oryza sativa Indica Group]; NbS00012453g0003.1 protein NbC24461651g0001.1 protein ; (*GB) gi|82623429|gb|ABB87129.1| (e_value=6e-44) 60S ribosomal protein L7A-like [Solanum tuberosum];; (*SWP) sp|P35685|RL7A_ORYSJ (e_value=2e-40) 60S ribosomal protein L7a OS=Oryza sativa subsp. japonica GN=RPL7A PE=2 SV=1;; (*TAIR) AT2G47610.1 (e_value=3e-41) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g064470.2.1 (e_value=1e-46) genomic_reference:SL2.40ch06 gene_region:36536162-36538759 transcript_region:SL2.40ch06:36536162..36538759- go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00005304g0001.1 protein NbC23744093g0001.1 protein ; (*ITAG) Solyc07g032510.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:39239627-39259864 transcript_region:SL2.40ch07:39239627..39259864+ functional_description:"Microspherule protein 1 (AHRD V1 *-*- Q5BJR5_RAT); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00043179g0004.1 protein NbS00014370g0003.1 protein NbS00014370g0004.1 protein NbC25800175g0001.1 protein ; (*GB) gi|5931761|emb|CAB56614.1| (e_value=4e-44) acetolactate synthase small subunit [Nicotiana plumbaginifolia];; (*TAIR) AT2G31810.2 (e_value=5e-18) | Symbols: | ACT domain-containing small subunit of acetolactate synthase protein | chr2:13524419-13528246 FORWARD LENGTH=421;; (*ITAG) Solyc12g019310.1.1 (e_value=4e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9942632-9953856 transcript_region:SL2.40ch12:9942632..9953856- go_terms:GO:0003984,GO:0030234 functional_description:"Acetolactate synthase small subunit (AHRD V1 **** Q9SMC2_NICPL); contains Interpro domain(s) IPR004789 Acetolactate synthase, small subunit "; GO:0003984,GO:0030234 NbS00048575g0002.1 protein ; (*GB) gi|14625425|dbj|BAB61919.1| (e_value=2e-52) calmodulin NtCaM13 [Nicotiana tabacum];; (*SWP) sp|P27163|CALM2_PETHY (e_value=1e-46) Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2;; (*TAIR) AT4G14640.1 (e_value=2e-47) | Symbols: CAM8, AtCML8 | calmodulin 8 | chr4:8397800-8399996 FORWARD LENGTH=151;; (*ITAG) Solyc06g053930.2.1 (e_value=5e-55) genomic_reference:SL2.40ch06 gene_region:33328449-33330360 transcript_region:SL2.40ch06:33328449..33330360+ go_terms:GO:0005516 functional_description:"Calmodulin (AHRD V1 **** Q39890_SOYBN); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005516 NbS00030690g0001.1 protein NbS00011481g0005.1 protein NbS00011481g0006.1 protein NbS00002115g0001.1 protein NbS00012974g0001.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=8e-26) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc03g080090.2.1 (e_value=1e-20) genomic_reference:SL2.40ch03 gene_region:45541347-45546345 transcript_region:SL2.40ch03:45541347..45546345+ go_terms:GO:0003713,GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003713,GO:0003700 NbS00002654g0001.1 protein ; (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-17) Putative polyprotein, identical [Solanum demissum];; (*ITAG) Solyc01g028970.1.1 (e_value=5e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:35401667-35403682 transcript_region:SL2.40ch01:35401667..35403682- go_terms:GO:0008270 functional_description:"Retrotransposon gag protein (AHRD V1 ***- Q0KIS1_SOLDE); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; GO:0008270 NbS00060927g0001.1 protein NbS00019523g0001.1 protein NbS00014017g0003.1 protein NbS00010455g0002.1 protein NbS00046621g0001.1 protein NbS00020925g0002.1 protein NbC24441862g0001.1 protein ; (*GB) gi|148299085|gb|ABQ58080.1| (e_value=2e-95) subtilisin-like protease [Nicotiana tabacum];; (*SWP) sp|O65351|SUBL_ARATH (e_value=4e-78) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G67360.1 (e_value=3e-79) | Symbols: ARA12 | Subtilase family protein | chr5:26872192-26874465 REVERSE LENGTH=757;; (*ITAG) Solyc03g044150.2.1 (e_value=1e-91) genomic_reference:SL2.40ch03 gene_region:12190436-12193226 transcript_region:SL2.40ch03:12190436..12193226- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00009638g0003.1 protein ; (*ITAG) Solyc02g085980.1.1 (e_value=6e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:43361786-43362250 transcript_region:SL2.40ch02:43361786..43362250- functional_description:"Unknown Protein (AHRD V1)"; NbS00057049g0001.1 protein NbS00014643g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-17) RNase H family protein [Solanum demissum]; NbS00051548g0001.1 protein NbS00014014g0002.1 protein NbS00026638g0001.1 protein ; (*GB) gi|116047949|gb|ABJ53200.1| (e_value=6e-62) myosin VIII-1 [Nicotiana benthamiana];; (*ITAG) Solyc02g020910.2.1 (e_value=2e-41) genomic_reference:SL2.40ch02 gene_region:11008922-11043707 transcript_region:SL2.40ch02:11008922..11043707+ go_terms:GO:0060001 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00018065g0001.1 protein NbS00036504g0001.1 protein NbC23547360g0001.1 protein ; (*GB) gi|255563935|ref|XP_002522967.1| (e_value=1e-36) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0J7J7|CAF2M_ORYSJ (e_value=2e-36) CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2;; (*TAIR) AT5G54890.1 (e_value=2e-37) | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr5:22293346-22294909 FORWARD LENGTH=358;; (*ITAG) Solyc07g064490.2.1 (e_value=3e-46) genomic_reference:SL2.40ch07 gene_region:63838629-63841297 transcript_region:SL2.40ch07:63838629..63841297+ go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00000072g0002.1 protein NbS00005934g0102.1 protein NbS00005934g0105.1 protein NbC24960012g0001.1 protein ; (*GB) gi|356546014|ref|XP_003541427.1| (e_value=8e-20) PREDICTED: ABC transporter G family member 11-like [Glycine max];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=5e-14) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=4e-15) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc00g164680.1.1 (e_value=4e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:17843143-17845746 transcript_region:SL2.40ch00:17843143..17845746+ go_terms:GO:0016020,GO:0009073 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0009073 NbS00021597g0003.1 protein NbS00035608g0001.1 protein NbS00012124g0001.1 protein NbS00012124g0005.1 protein NbS00019822g0101.1 protein NbS00019822g0102.1 protein NbS00018476g0001.1 protein NbS00014529g0001.1 protein NbS00009717g0001.1 protein ; (*GB) gi|149228007|gb|ABR23001.1| (e_value=8e-30) NPR1 [Nicotiana attenuata];; (*ITAG) Solyc07g040690.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00024510g0001.1 protein ; (*GB) gi|147855864|emb|CAN78624.1| (e_value=7e-35) hypothetical protein VITISV_041103 [Vitis vinifera]; NbS00026488g0001.1 protein NbS00027703g0001.1 protein NbS00053137g0002.1 protein ; (*GB) gi|224089086|ref|XP_002308631.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL95|MOT1_ARATH (e_value=1e-39) Molybdate transporter 1 OS=Arabidopsis thaliana GN=MOT1 PE=1 SV=1;; (*TAIR) AT2G25680.1 (e_value=9e-41) | Symbols: MOT1 | molybdate transporter 1 | chr2:10933167-10934537 REVERSE LENGTH=456;; (*ITAG) Solyc10g084680.1.1 (e_value=7e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63445310-63446671 transcript_region:SL2.40ch10:63445310..63446671+ go_terms:GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- D7LBF8_ARALY); contains Interpro domain(s) IPR011547 Sulphate transporter "; GO:0016021 NbS00018876g0001.1 protein NbS00018876g0002.1 protein NbS00018876g0003.1 protein NbS00018876g0004.1 protein NbS00026734g0001.1 protein NbS00026734g0003.1 protein NbS00034965g0001.1 protein NbS00011783g0001.1 protein NbC25768054g0001.1 protein NbS00031838g0002.1 protein NbC24216073g0001.1 protein ; (*GB) gi|225459056|ref|XP_002285638.1| (e_value=1e-62) PREDICTED: uncharacterized protein LOC100254031 isoform 1 [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=5e-64) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=9e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00040556g0001.1 protein NbS00012786g0002.1 protein ; (*GB) gi|147855630|emb|CAN79165.1| (e_value=1e-44) hypothetical protein VITISV_019247 [Vitis vinifera];; (*SWP) sp|Q84RR2|ARI2_ARATH (e_value=4e-36) Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1;; (*TAIR) AT4G34370.2 (e_value=3e-37) | Symbols: ARI1 | RING/U-box superfamily protein | chr4:16434547-16437037 FORWARD LENGTH=581;; (*ITAG) Solyc04g079780.2.1 (e_value=1e-60) genomic_reference:SL2.40ch04 gene_region:61707011-61709902 transcript_region:SL2.40ch04:61707011..61709902- go_terms:GO:0005515,GO:0004842 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-* D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0005515,GO:0004842 NbS00011429g0001.1 protein NbS00037245g0001.1 protein ; (*GB) gi|255551677|ref|XP_002516884.1| (e_value=4e-158) acyl-CoA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=8e-55) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT5G18590.2 (e_value=8e-137) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:6178516-6182186 REVERSE LENGTH=708;; (*ITAG) Solyc01g067480.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:68566952-68579332 transcript_region:SL2.40ch01:68566952..68579332+ go_terms:GO:0000062 functional_description:"Kelch-domain-containing protein (AHRD V1 *--- C5FLF8_NANOT); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0000062 NbS00025504g0003.1 protein NbS00038812g0001.1 protein ; (*GB) gi|363814539|ref|NP_001242421.1| (e_value=3e-49) uncharacterized protein LOC100787078 [Glycine max];; (*TAIR) AT4G32750.1 (e_value=9e-43) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:15796415-15798091 REVERSE LENGTH=293;; (*ITAG) Solyc08g068350.2.1 (e_value=9e-63) genomic_reference:SL2.40ch08 gene_region:54652779-54659355 transcript_region:SL2.40ch08:54652779..54659355- functional_description:"Unknown Protein (AHRD V1)"; NbS00038812g0003.1 protein NbS00026617g0003.1 protein ; (*SWP) sp|Q6BDA0|ELF6_ARATH (e_value=3e-12) Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1;; (*TAIR) AT5G04240.1 (e_value=3e-13) | Symbols: ELF6 | Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340;; (*ITAG) Solyc04g028570.1.1 (e_value=1e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:28619609-28630011 transcript_region:SL2.40ch04:28619609..28630011- functional_description:"Lysine-specific demethylase 4D (AHRD V1 *--- KDM4D_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; NbS00026617g0004.1 protein ; (*ITAG) Solyc10g005920.2.1 (e_value=5e-16) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00026617g0006.1 protein NbS00000692g0006.1 protein NbS00008401g0003.1 protein NbS00028417g0001.1 protein NbS00025711g0001.1 protein NbC25844436g0001.1 protein ; (*GB) gi|157835621|pdb|2P5Q|A (e_value=3e-61) Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form;; (*SWP) sp|Q9LEF0|GPX4_MESCR (e_value=2e-55) Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1;; (*TAIR) AT1G63460.1 (e_value=3e-54) | Symbols: GPX8, ATGPX8 | glutathione peroxidase 8 | chr1:23535118-23536326 FORWARD LENGTH=167;; (*ITAG) Solyc12g056240.1.1 (e_value=1e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47561479-47563847 transcript_region:SL2.40ch12:47561479..47563847- go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9GKI5_POPTR); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00054487g0001.1 protein NbS00047944g0001.1 protein ; (*GB) gi|359486385|ref|XP_002273190.2| (e_value=2e-76) PREDICTED: uncharacterized protein LOC100243292 [Vitis vinifera];; (*TAIR) AT5G05500.1 (e_value=4e-67) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:1629716-1630267 FORWARD LENGTH=183;; (*ITAG) Solyc05g052500.2.1 (e_value=7e-77) genomic_reference:SL2.40ch05 gene_region:61857465-61864807 transcript_region:SL2.40ch05:61857465..61864807+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00021946g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=6e-13) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00034971g0003.1 protein NbS00005046g0001.1 protein NbS00008177g0002.1 protein NbS00033925g0002.1 protein NbS00022101g0001.1 protein NbS00055321g0001.1 protein NbS00055321g0002.1 protein ; (*GB) gi|12229632|sp|O24146.1|4CL2_TOBAC (e_value=1e-29) RecName: Full=4-coumarate--CoA ligase 2; Short=4CL 2; AltName: Full=4-coumaroyl-CoA synthase 2;; (*SWP) sp|O24146|4CL2_TOBAC (e_value=4e-31) 4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1;; (*TAIR) AT3G21240.1 (e_value=3e-23) | Symbols: 4CL2, AT4CL2 | 4-coumarate:CoA ligase 2 | chr3:7454497-7457314 REVERSE LENGTH=556;; (*ITAG) Solyc03g117870.2.1 (e_value=4e-31) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00016702g0002.1 protein NbS00034715g0002.1 protein ; (*GB) gi|297736541|emb|CBI25412.3| (e_value=4e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C0H6|KLHL4_HUMAN (e_value=3e-25) Kelch-like protein 4 OS=Homo sapiens GN=KLHL4 PE=2 SV=2;; (*TAIR) AT5G01660.1 (e_value=1e-61) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc09g015120.2.1 (e_value=4e-83) genomic_reference:SL2.40ch09 gene_region:8040621-8045731 transcript_region:SL2.40ch09:8040621..8045731+ functional_description:"Kelch-like protein (AHRD V1 *-*- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00037875g0001.1 protein ; (*GB) gi|255571736|ref|XP_002526811.1| (e_value=3e-25) protein with unknown function [Ricinus communis];; (*TAIR) AT1G35530.2 (e_value=2e-27) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390;; (*ITAG) Solyc11g020760.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11968644-11975150 transcript_region:SL2.40ch11:11968644..11975150+ go_terms:GO:0005524 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00054911g0001.1 protein NbS00054911g0002.1 protein NbS00042362g0001.1 protein ; (*GB) gi|359492658|ref|XP_002281859.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like [Vitis vinifera];; (*SWP) sp|Q9LN69|PPR50_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2;; (*TAIR) AT1G19290.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6666249-6668963 FORWARD LENGTH=904;; (*ITAG) Solyc04g079850.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:61758875-61762601 transcript_region:SL2.40ch04:61758875..61762601+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHC1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058015g0001.1 protein ; (*GB) gi|4097585|gb|AAD09518.1| (e_value=3e-30) NTGP4, partial [Nicotiana tabacum];; (*SWP) sp|P54120|AIG1_ARATH (e_value=4e-20) Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1;; (*TAIR) AT1G33900.1 (e_value=4e-23) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:12311518-12313518 REVERSE LENGTH=326;; (*ITAG) Solyc11g028010.1.1 (e_value=7e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00031683g0001.1 protein NbS00059455g0002.1 protein NbC24809697g0001.1 protein ; (*GB) gi|324388030|gb|ADY38792.1| (e_value=1e-59) hypothetical protein MA29G21.11 [Coffea arabica];; (*TAIR) AT5G28500.2 (e_value=1e-52) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). | chr5:10477810-10478945 FORWARD LENGTH=269;; (*ITAG) Solyc11g006060.1.1 (e_value=3e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:860023-861378 transcript_region:SL2.40ch11:860023..861378+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00S02_OSTTA)"; NbS00010512g0001.1 protein ; (*ITAG) Solyc09g031650.2.1 (e_value=8e-19) genomic_reference:SL2.40ch09 gene_region:23381791-23386705 transcript_region:SL2.40ch09:23381791..23386705- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q1RQ04_CIOIN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00031704g0001.1 protein NbS00006006g0003.1 protein NbS00044561g0001.1 protein ; (*GB) gi|97180275|sp|Q2PCF1.1|PDR2_NICPL (e_value=5e-68) RecName: Full=Pleiotropic drug resistance protein 2; AltName: Full=NpPDR2;; (*SWP) sp|Q2PCF1|PDR2_NICPL (e_value=2e-69) Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1;; (*TAIR) AT2G36380.1 (e_value=5e-41) | Symbols: PDR6, ATPDR6 | pleiotropic drug resistance 6 | chr2:15257583-15263627 FORWARD LENGTH=1453;; (*ITAG) Solyc11g067000.1.1 (e_value=8e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49852009-49861096 transcript_region:SL2.40ch11:49852009..49861096- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00027681g0003.1 protein NbS00027681g0004.1 protein NbS00060885g0001.1 protein ; (*GB) gi|225432134|ref|XP_002274619.1| (e_value=3e-41) PREDICTED: probable beta-D-xylosidase 5-like [Vitis vinifera];; (*SWP) sp|Q9LJN4|BXL5_ARATH (e_value=2e-29) Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2;; (*TAIR) AT3G19620.1 (e_value=1e-30) | Symbols: | Glycosyl hydrolase family protein | chr3:6815613-6818308 REVERSE LENGTH=781;; (*ITAG) Solyc01g079570.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:71151785-71157448 transcript_region:SL2.40ch01:71151785..71157448+ go_terms:GO:0005975 functional_description:"Beta xylosidase (AHRD V1 ***- Q6RXY3_FRAAN); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00015393g0002.1 protein NbS00015393g0003.1 protein NbS00003563g0002.1 protein NbS00024628g0001.1 protein ; (*GB) gi|147769855|emb|CAN61272.1| (e_value=5e-20) hypothetical protein VITISV_039063 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=3e-12) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc05g053320.1.1 (e_value=6e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62583300-62583965 transcript_region:SL2.40ch05:62583300..62583965+ go_terms:GO:0008270 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00024628g0005.1 protein NbC24059207g0001.1 protein ; (*GB) gi|147828480|emb|CAN64316.1| (e_value=1e-42) hypothetical protein VITISV_027915 [Vitis vinifera];; (*SWP) sp|P0C8Q5|PP336_ARATH (e_value=9e-37) Pentatricopeptide repeat-containing protein At4g22760 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1;; (*TAIR) AT4G22760.1 (e_value=7e-38) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11960553-11962289 FORWARD LENGTH=578;; (*ITAG) Solyc10g006730.1.1 (e_value=6e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:1190015-1191748 transcript_region:SL2.40ch10:1190015..1191748+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7ME07_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009615g0101.1 protein NbS00025342g0001.1 protein NbS00025342g0002.1 protein NbS00018133g0001.1 protein NbS00018133g0002.1 protein NbS00006731g0003.1 protein ; (*GB) gi|255558870|ref|XP_002520458.1| (e_value=7e-14) hypothetical protein RCOM_0731430 [Ricinus communis];; (*ITAG) Solyc09g011720.2.1 (e_value=1e-39) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00029677g0002.1 protein NbS00040530g0002.1 protein NbS00040530g0003.1 protein NbS00034700g0001.1 protein NbS00034700g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-90) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc03g044360.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:12836647-12838936 transcript_region:SL2.40ch03:12836647..12838936- functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00006764g0001.1 protein NbC23420229g0001.1 protein ; (*ITAG) Solyc07g006110.2.1 (e_value=5e-20) genomic_reference:SL2.40ch07 gene_region:965123-969368 transcript_region:SL2.40ch07:965123..969368+ go_terms:GO:0001653,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0001653,GO:0004675 NbS00005610g0201.1 protein NbS00061245g0001.1 protein ; (*GB) gi|13384046|gb|AAK21247.1|AF335234_1 (e_value=1e-64) MADS-box transcription factor FBP4 [Petunia x hybrida];; (*SWP) sp|Q39685|CMB1_DIACA (e_value=2e-31) MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1;; (*TAIR) AT2G03710.3 (e_value=9e-29) | Symbols: SEP4, AGL3 | K-box region and MADS-box transcription factor family protein | chr2:1129622-1131242 FORWARD LENGTH=187;; (*ITAG) Solyc05g012020.2.1 (e_value=2e-64) genomic_reference:SL2.40ch05 gene_region:5225203-5230962 transcript_region:SL2.40ch05:5225203..5230962- go_terms:GO:0003700,GO:0046982 functional_description:"MADS-box transcription factor MADS-MC (AHRD V1 *-** Q8S4L5_SOLLC); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700,GO:0046982 NbS00008237g0001.1 protein ; (*ITAG) Solyc05g018090.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:20013530-20016331 transcript_region:SL2.40ch05:20013530..20016331- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_PONAB); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00000535g0005.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-35) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=2e-18) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426;; (*ITAG) Solyc07g037900.1.1 (e_value=8e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:41420885-41422318 transcript_region:SL2.40ch07:41420885..41422318+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00037682g0001.1 protein NbS00022136g0001.1 protein ; (*ITAG) Solyc03g058860.2.1 (e_value=9e-18) genomic_reference:SL2.40ch03 gene_region:23704625-23713141 transcript_region:SL2.40ch03:23704625..23713141- functional_description:"3-dehydroquinate synthase (AHRD V1 ***- B4FYZ3_MAIZE); contains Interpro domain(s) IPR002812 3-dehydroquinate synthase, prokaryotic-type "; NbS00002468g0102.1 protein NbS00017951g0002.1 protein ; (*GB) gi|224126525|ref|XP_002319859.1| (e_value=3e-16) predicted protein [Populus trichocarpa]; NbS00009164g0003.1 protein NbS00047657g0001.1 protein ; (*GB) gi|356504105|ref|XP_003520839.1| (e_value=2e-61) PREDICTED: uncharacterized protein LOC100797588 [Glycine max];; (*TAIR) AT3G04740.1 (e_value=5e-62) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=1e-78) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbS00048770g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00037061g0001.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=5e-39) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00038205g0002.1 protein ; (*ITAG) Solyc04g072500.1.1 (e_value=1e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:57099931-57101037 transcript_region:SL2.40ch04:57099931..57101037- functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q67UH1_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00022234g0001.1 protein NbS00001236g0011.1 protein NbS00039542g0003.1 protein ; (*GB) gi|225443088|ref|XP_002271967.1| (e_value=4e-32) PREDICTED: nuclear pore complex protein Nup98-Nup96 [Vitis vinifera];; (*TAIR) AT1G80680.1 (e_value=3e-27) | Symbols: SAR3, MOS3, PRE, NUP96 | SUPPRESSOR OF AUXIN RESISTANCE 3 | chr1:30324219-30328489 FORWARD LENGTH=1046;; (*ITAG) Solyc03g117120.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:60419258-60426888 transcript_region:SL2.40ch03:60419258..60426888- go_terms:GO:0015288 functional_description:"Nucleoporin (Fragment) (AHRD V1 *--- Q677F1_HYAOR); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0015288 NbC25340200g0001.1 protein ; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=2e-64) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=4e-66) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT3G48870.2 (e_value=7e-65) | Symbols: HSP93-III | Clp ATPase | chr3:18122363-18125915 REVERSE LENGTH=921;; (*ITAG) Solyc12g042060.1.1 (e_value=3e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00011161g0004.1 protein ; (*ITAG) Solyc01g095130.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:78274721-78279871 transcript_region:SL2.40ch01:78274721..78279871- functional_description:"Transcription factor (AHRD V1 ***- O04238_VICFA)"; NbS00000186g0002.1 protein NbS00027705g0002.1 protein NbC24947986g0001.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=7e-79) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00051970g0003.1 protein ; (*GB) gi|388491778|gb|AFK33955.1| (e_value=4e-16) unknown [Medicago truncatula];; (*TAIR) AT3G53140.1 (e_value=3e-15) | Symbols: | O-methyltransferase family protein | chr3:19695692-19697355 FORWARD LENGTH=359;; (*ITAG) Solyc10g085830.1.1 (e_value=5e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64223677-64226056 transcript_region:SL2.40ch10:64223677..64226056+ go_terms:GO:0008171 functional_description:"O-methyltransferase 1 (AHRD V1 ***- D7MTQ7_ARALY); contains Interpro domain(s) IPR016461 O-methyltransferase, COMT, eukaryota "; GO:0008171 NbS00020943g0003.1 protein ; (*GB) gi|359473390|ref|XP_002268680.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc01g108410.1.1 (e_value=4e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87504560-87506863 transcript_region:SL2.40ch01:87504560..87506863+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00020943g0006.1 protein ; (*GB) gi|359473396|ref|XP_002268358.2| (e_value=2e-95) PREDICTED: TMV resistance protein N-like [Vitis vinifera];; (*TAIR) AT1G27180.1 (e_value=4e-70) | Symbols: | disease resistance protein (TIR-NBS-LRR class), putative | chr1:9439859-9445818 FORWARD LENGTH=1556;; (*ITAG) Solyc05g006620.2.1 (e_value=1e-177) genomic_reference:SL2.40ch05 gene_region:1267542-1277499 transcript_region:SL2.40ch05:1267542..1277499- go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0017111,GO:0006915 NbC25849461g0001.1 protein ; (*GB) gi|225446619|ref|XP_002280724.1| (e_value=4e-25) PREDICTED: uncharacterized protein LOC100255804 [Vitis vinifera];; (*TAIR) AT3G58640.2 (e_value=2e-21) | Symbols: | Mitogen activated protein kinase kinase kinase-related | chr3:21687153-21692675 REVERSE LENGTH=809;; (*ITAG) Solyc07g055130.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:60575268-60584663 transcript_region:SL2.40ch07:60575268..60584663- go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7LW60_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC23240422g0001.1 protein ; (*ITAG) Solyc03g118920.2.1 (e_value=3e-15) genomic_reference:SL2.40ch03 gene_region:61739631-61749662 transcript_region:SL2.40ch03:61739631..61749662+ go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00016676g0001.1 protein NbS00035527g0003.1 protein NbS00026395g0001.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=5e-34) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=6e-32) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbC26265174g0001.1 protein NbS00039691g0002.1 protein ; (*ITAG) Solyc02g093660.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00039691g0004.1 protein NbS00033670g0003.1 protein NbS00018553g0103.1 protein NbS00031840g0002.1 protein ; (*GB) gi|85068678|gb|ABC69419.1| (e_value=8e-65) CYP72A56 [Nicotiana tabacum];; (*SWP) sp|Q05047|C72A1_CATRO (e_value=2e-35) Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1;; (*TAIR) AT3G14620.1 (e_value=2e-34) | Symbols: CYP72A8 | cytochrome P450, family 72, subfamily A, polypeptide 8 | chr3:4914978-4916853 FORWARD LENGTH=515;; (*ITAG) Solyc07g055530.2.1 (e_value=3e-68) genomic_reference:SL2.40ch07 gene_region:60847022-60850675 transcript_region:SL2.40ch07:60847022..60850675- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007986g0001.1 protein NbS00027527g0004.1 protein NbS00017899g0003.1 protein NbS00032736g0001.1 protein ; (*GB) gi|255568100|ref|XP_002525026.1| (e_value=1e-35) Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=2e-25) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT4G17180.1 (e_value=6e-31) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr4:9646541-9648045 FORWARD LENGTH=475;; (*ITAG) Solyc04g015190.2.1 (e_value=1e-43) genomic_reference:SL2.40ch04 gene_region:5371233-5375212 transcript_region:SL2.40ch04:5371233..5375212- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00006099g0001.1 protein NbS00006099g0102.1 protein NbS00036343g0001.1 protein NbS00003676g0001.1 protein ; (*GB) gi|225434447|ref|XP_002277764.1| (e_value=5e-93) PREDICTED: cation/H(+) antiporter 24 [Vitis vinifera];; (*SWP) sp|Q1HDT2|CHX24_ARATH (e_value=1e-60) Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2;; (*TAIR) AT5G37060.1 (e_value=1e-61) | Symbols: ATCHX24, CHX24 | cation/H+ exchanger 24 | chr5:14642741-14645414 REVERSE LENGTH=859;; (*ITAG) Solyc12g036260.1.1 (e_value=1e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:30201103-30203583 transcript_region:SL2.40ch12:30201103..30203583+ go_terms:GO:0016021 functional_description:"Cation/H(+) antiporter 4 (AHRD V1 ***- CHX4_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0016021 NbS00014699g0003.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00002418g0101.1 protein NbS00002344g0001.1 protein NbS00011689g0002.1 protein NbS00018702g0002.1 protein ; (*GB) gi|1449179|dbj|BAA13101.1| (e_value=2e-74) N-ethylmaleimide sensitive fusion protein [Nicotiana tabacum];; (*SWP) sp|Q9M0Y8|NSF_ARATH (e_value=1e-69) Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2;; (*TAIR) AT4G04910.1 (e_value=7e-71) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=2e-74) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00017073g0003.1 protein ; (*ITAG) Solyc01g066890.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00017073g0004.1 protein ; (*GB) gi|224126525|ref|XP_002319859.1| (e_value=5e-18) predicted protein [Populus trichocarpa]; NbS00021223g0002.1 protein NbS00000467g0001.1 protein NbS00000467g0002.1 protein ; (*GB) gi|255579416|ref|XP_002530552.1| (e_value=2e-24) hypothetical protein RCOM_1267370 [Ricinus communis];; (*TAIR) AT2G42510.2 (e_value=2e-19) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62; Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | chr2:17701686-17704618 FORWARD LENGTH=653;; (*ITAG) Solyc09g098560.2.1 (e_value=2e-64) genomic_reference:SL2.40ch09 gene_region:67626581-67634305 transcript_region:SL2.40ch09:67626581..67634305+ go_terms:GO:0000398 functional_description:"Survival motor neuron containing protein (AHRD V1 ***- B6TZU2_MAIZE); contains Interpro domain(s) IPR007022 Survival motor neuron interacting protein 1 "; GO:0000398 NbS00029858g0004.1 protein NbS00029858g0006.1 protein NbS00016768g0004.1 protein NbS00008733g0001.1 protein NbS00036230g0001.1 protein ; (*GB) gi|359486497|ref|XP_002272442.2| (e_value=0.0) PREDICTED: anaphase-promoting complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=2e-138) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=1e-139) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048460.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:27568152-27584660 transcript_region:SL2.40ch06:27568152..27584660+ go_terms:GO:0016887 functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 ***- A2ATQ4_MOUSE); contains Interpro domain(s) IPR002015 Proteasome/cyclosome, regulatory subunit "; GO:0016887 NbS00013223g0001.1 protein NbS00017490g0103.1 protein NbS00027742g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-58) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00029163g0001.1 protein ; (*TAIR) AT1G13570.1 (e_value=8e-13) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc04g005880.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:566560-568002 transcript_region:SL2.40ch04:566560..568002- functional_description:"F-box/LRR-repeat protein At3g26922 (AHRD V1 *-*- FBL47_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00052894g0001.1 protein ; (*GB) gi|57116144|gb|AAW33596.1| (e_value=5e-35) Dad1/CCD8 [Petunia x hybrida];; (*ITAG) Solyc08g066650.2.1 (e_value=2e-30) genomic_reference:SL2.40ch08 gene_region:52620195-52623269 transcript_region:SL2.40ch08:52620195..52623269- go_terms:GO:0003834 functional_description:"Carotenoid cleavage dioxygenase 8"; GO:0003834 NbS00000674g0002.1 protein NbS00025088g0001.1 protein NbC25595897g0001.1 protein ; (*GB) gi|297742187|emb|CBI33974.3| (e_value=4e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G17140.3 (e_value=8e-30) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4219;; (*ITAG) Solyc08g077490.1.1 (e_value=1e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:58609379-58620173 transcript_region:SL2.40ch08:58609379..58620173+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 ***- C1GW28_PARBA)"; NbS00016990g0003.1 protein NbS00014654g0002.1 protein ; (*GB) gi|359477035|ref|XP_002265701.2| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100265343 [Vitis vinifera];; (*TAIR) AT5G65950.1 (e_value=1e-35) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190;; (*ITAG) Solyc02g082280.2.1 (e_value=3e-56) genomic_reference:SL2.40ch02 gene_region:40562681-40571418 transcript_region:SL2.40ch02:40562681..40571418+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY7_ARATH); contains Interpro domain(s) IPR012880 Protein of unknown function DUF1683, C-terminal "; NbS00060849g0001.1 protein ; (*GB) gi|225435468|ref|XP_002285479.1| (e_value=2e-87) PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q8VXZ9|R47BP_ARATH (e_value=2e-82) Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1;; (*TAIR) AT5G19350.2 (e_value=1e-83) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:6518978-6521295 FORWARD LENGTH=421;; (*ITAG) Solyc11g065880.1.1 (e_value=2e-99) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48541347-48547527 transcript_region:SL2.40ch11:48541347..48547527- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00020254g0101.1 protein NbS00022177g0001.1 protein NbC25415813g0001.1 protein ; (*GB) gi|357476435|ref|XP_003608503.1| (e_value=2e-19) Pre-rRNA-processing protein ESF1 [Medicago truncatula];; (*TAIR) AT3G01160.1 (e_value=6e-12) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | chr3:54655-57449 REVERSE LENGTH=713;; (*ITAG) Solyc02g083470.2.1 (e_value=5e-45) genomic_reference:SL2.40ch02 gene_region:41440829-41445430 transcript_region:SL2.40ch02:41440829..41445430- functional_description:"Pre-rRNA-processing protein ESF1 (AHRD V1 *-*- C5FM19_NANOT)"; NbS00006527g0001.1 protein NbS00006527g0002.1 protein NbS00022584g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-75) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00022584g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g059350.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:49937177-49940525 transcript_region:SL2.40ch09:49937177..49940525- go_terms:GO:0008270 functional_description:"Transposase (Fragment) (AHRD V1 *--- A8BTK4_VITVI); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00022584g0003.1 protein NbS00016644g0001.1 protein NbS00017463g0003.1 protein NbS00047692g0001.1 protein NbS00032770g0002.1 protein NbS00001593g0101.1 protein NbC25510550g0001.1 protein ; (*GB) gi|255546065|ref|XP_002514092.1| (e_value=1e-17) pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis];; (*TAIR) AT4G29820.1 (e_value=9e-19) | Symbols: CFIM-25, ATCFIM-25 | homolog of CFIM-25 | chr4:14596047-14597317 REVERSE LENGTH=222;; (*ITAG) Solyc07g041000.2.1 (e_value=1e-21) genomic_reference:SL2.40ch07 gene_region:48812782-48815986 transcript_region:SL2.40ch07:48812782..48815986- go_terms:GO:0042826,GO:0042802 functional_description:"Cleavage and polyadenylation specificity factor subunit 5 (AHRD V1 ***- C9SP81_VERA1); contains Interpro domain(s) IPR016706 Cleavage and polyadenylation specificity factor, 25 kDa subunit "; GO:0042826,GO:0042802 NbS00026531g0001.1 protein NbS00039006g0001.1 protein NbS00039006g0003.1 protein NbS00003489g0103.1 protein NbS00029252g0001.1 protein ; (*ITAG) Solyc03g123730.2.1 (e_value=1e-13) genomic_reference:SL2.40ch03 gene_region:64522532-64528154 transcript_region:SL2.40ch03:64522532..64528154+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbC23241500g0001.1 protein ; (*GB) gi|9230281|gb|AAF85800.1| (e_value=1e-32) 60S ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|Q42064|RL83_ARATH (e_value=2e-33) 60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=1 SV=2;; (*TAIR) AT4G36130.1 (e_value=2e-34) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc12g005330.1.1 (e_value=2e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:208843-210348 transcript_region:SL2.40ch12:208843..210348+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbC24504970g0001.1 protein ; (*GB) gi|297792853|ref|XP_002864311.1| (e_value=9e-38) PTAC15 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G54180.1 (e_value=3e-40) | Symbols: PTAC15 | plastid transcriptionally active 15 | chr5:21988544-21990183 FORWARD LENGTH=500;; (*ITAG) Solyc03g081300.2.1 (e_value=5e-54) genomic_reference:SL2.40ch03 gene_region:45727509-45729457 transcript_region:SL2.40ch03:45727509..45729457- functional_description:"At4g38160-like protein (Fragment) (AHRD V1 *--- C0JEI4_9BRAS); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00045064g0003.1 protein NbS00000008g0001.1 protein NbC23988691g0001.1 protein ; (*GB) gi|168049317|ref|XP_001777110.1| (e_value=3e-31) predicted protein [Physcomitrella patens subsp. patens];; (*SWP) sp|P20363|TBA3_ARATH (e_value=8e-32) Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1;; (*TAIR) AT5G19780.1 (e_value=6e-33) | Symbols: TUA5 | tubulin alpha-5 | chr5:6687212-6688926 FORWARD LENGTH=450;; (*ITAG) Solyc08g006890.2.1 (e_value=5e-32) genomic_reference:SL2.40ch08 gene_region:1457076-1460213 transcript_region:SL2.40ch08:1457076..1460213+ go_terms:GO:0046982,GO:0005200 functional_description:"Tubulin alpha-3 chain (AHRD V1 ***- B6SPX4_MAIZE); contains Interpro domain(s) IPR002452 Alpha tubulin "; GO:0046982,GO:0005200 NbS00007386g0201.1 protein NbC24164090g0001.1 protein ; (*GB) gi|224108331|ref|XP_002314808.1| (e_value=4e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55681|RECG_SYNY3 (e_value=4e-21) ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1;; (*TAIR) AT2G01440.1 (e_value=3e-46) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr2:193950-199056 REVERSE LENGTH=973;; (*ITAG) Solyc05g008040.2.1 (e_value=6e-53) genomic_reference:SL2.40ch05 gene_region:2454868-2465497 transcript_region:SL2.40ch05:2454868..2465497+ go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase RECG-like (AHRD V1 **** Q6ZFX9_ORYSJ); contains Interpro domain(s) IPR004609 DNA helicase, ATP-dependent, RecG "; GO:0004003 NbS00009910g0002.1 protein ; (*GB) gi|356512261|ref|XP_003524839.1| (e_value=2e-74) PREDICTED: putative phagocytic receptor 1b-like [Glycine max];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=7e-30) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=3e-75) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc01g005030.2.1 (e_value=3e-78) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00043768g0001.1 protein ; (*GB) gi|297813195|ref|XP_002874481.1| (e_value=5e-18) transducin family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G07410.2 (e_value=1e-19) | Symbols: | Transducin family protein / WD-40 repeat family protein | chr4:4201465-4204576 REVERSE LENGTH=702;; (*ITAG) Solyc12g088290.1.1 (e_value=4e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62172387-62180578 transcript_region:SL2.40ch12:62172387..62180578+ functional_description:"U3 small nucleolar RNA-associated protein (AHRD V1 **-- B6JWV4_SCHJY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00030458g0004.1 protein NbS00059345g0001.1 protein ; (*GB) gi|18150158|dbj|BAB83649.1| (e_value=1e-51) spermine synthase [Arabidopsis thaliana];; (*SWP) sp|Q9S7X6|ACL5_ARATH (e_value=1e-52) Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1;; (*TAIR) AT5G19530.2 (e_value=1e-53) | Symbols: ACL5 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:6589176-6591070 REVERSE LENGTH=332;; (*ITAG) Solyc07g041300.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:49559423-49563100 transcript_region:SL2.40ch07:49559423..49563100- go_terms:GO:0016768,GO:0010487 functional_description:"Spermidine synthase (AHRD V1 **** A4RYD8_OSTLU); contains Interpro domain(s) IPR001045 Spermine synthase "; GO:0016768,GO:0010487 NbS00003393g0002.1 protein NbS00041555g0001.1 protein NbS00018305g0001.1 protein ; (*GB) gi|356558223|ref|XP_003547407.1| (e_value=2e-21) PREDICTED: uncharacterized protein LOC100798753 [Glycine max];; (*TAIR) AT5G17370.1 (e_value=1e-17) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:5721801-5724719 REVERSE LENGTH=529;; (*ITAG) Solyc01g021640.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:32489212-32515692 transcript_region:SL2.40ch01:32489212..32515692+ functional_description:"DDB1- and CUL4-associated factor 4 (AHRD V1 **-- DCAF4_BOVIN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00039676g0005.1 protein NbS00025565g0001.1 protein ; (*GB) gi|356498972|ref|XP_003518319.1| (e_value=2e-34) PREDICTED: ubiquitin-activating enzyme E1 2-like [Glycine max];; (*SWP) sp|P92974|UBE12_ARATH (e_value=9e-32) Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1;; (*TAIR) AT5G06460.1 (e_value=6e-33) | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme 2 | chr5:1970239-1974382 FORWARD LENGTH=1077;; (*ITAG) Solyc06g007320.2.1 (e_value=2e-37) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00051490g0001.1 protein ; (*GB) gi|296088084|emb|CBI35443.3| (e_value=6e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G64420.1 (e_value=3e-40) | Symbols: | DNA polymerase V family | chr5:25756416-25761122 FORWARD LENGTH=1306;; (*ITAG) Solyc01g106240.2.1 (e_value=4e-60) genomic_reference:SL2.40ch01 gene_region:85962270-85971192 transcript_region:SL2.40ch01:85962270..85971192+ go_terms:GO:0006350 functional_description:"DNA polymerase V (AHRD V1 ***- A2Q1A6_MEDTR); contains Interpro domain(s) IPR007015 DNA polymerase V "; GO:0006350 NbS00015963g0002.1 protein NbS00035620g0001.1 protein ; (*ITAG) Solyc10g038180.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:20317853-20319038 transcript_region:SL2.40ch10:20317853..20319038- functional_description:"Polyprotein (AHRD V1 **-- Q94KV0_ARATH)"; NbS00049874g0001.1 protein ; (*GB) gi|255563665|ref|XP_002522834.1| (e_value=5e-41) breast carcinoma amplified sequence, putative [Ricinus communis];; (*TAIR) AT5G54730.1 (e_value=1e-20) | Symbols: ATATG18F, ATG18F, G18F | homolog of yeast autophagy 18 (ATG18) F | chr5:22233977-22236804 REVERSE LENGTH=763;; (*ITAG) Solyc12g005230.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:147174-153831 transcript_region:SL2.40ch12:147174..153831+ functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00009159g0002.1 protein NbS00003797g0002.1 protein NbS00003797g0005.1 protein NbS00034600g0003.1 protein NbC24885355g0001.1 protein ; (*GB) gi|147815227|emb|CAN70028.1| (e_value=7e-23) hypothetical protein VITISV_029145 [Vitis vinifera];; (*TAIR) AT3G57660.1 (e_value=6e-15) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00031218g0003.1 protein ; (*GB) gi|147841566|emb|CAN70901.1| (e_value=8e-16) hypothetical protein VITISV_007094 [Vitis vinifera]; NbS00031218g0004.1 protein NbS00004916g0003.1 protein NbS00052595g0001.1 protein NbS00026155g0004.1 protein NbS00004842g0002.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=1e-19) hypothetical protein [Cucumis melo subsp. melo]; NbS00020802g0101.1 protein NbS00020802g0102.1 protein NbS00020802g0202.1 protein NbS00020802g0207.1 protein NbS00027254g0001.1 protein NbS00022004g0002.1 protein NbS00026727g0001.1 protein NbS00014734g0001.1 protein NbS00046364g0002.1 protein NbS00009562g0002.1 protein ; (*GB) gi|147800487|emb|CAN68581.1| (e_value=2e-24) hypothetical protein VITISV_011863 [Vitis vinifera];; (*ITAG) Solyc10g044500.1.1 (e_value=6e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00029531g0003.1 protein ; (*GB) gi|296086145|emb|CBI31586.3| (e_value=4e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02020.1 (e_value=3e-19) | Symbols: SIS | Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). | chr5:386557-387921 REVERSE LENGTH=149;; (*ITAG) Solyc05g052890.2.1 (e_value=5e-41) genomic_reference:SL2.40ch05 gene_region:62215390-62217617 transcript_region:SL2.40ch05:62215390..62217617- functional_description:"Unknown Protein (AHRD V1)"; NbS00046844g0001.1 protein NbS00010339g0001.1 protein ; (*ITAG) Solyc02g082890.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:41107892-41108668 transcript_region:SL2.40ch02:41107892..41108668- go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- Q22V07_TETTH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00030356g0004.1 protein NbS00011868g0001.1 protein NbS00010758g0002.1 protein NbS00016488g0001.1 protein ; (*GB) gi|357481715|ref|XP_003611143.1| (e_value=1e-12) hypothetical protein MTR_5g010780 [Medicago truncatula]; NbS00022849g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00022591g0003.1 protein NbS00000134g0003.1 protein NbS00000134g0004.1 protein NbS00039004g0002.1 protein ; (*GB) gi|357453141|ref|XP_003596847.1| (e_value=8e-21) hypothetical protein MTR_2g086750 [Medicago truncatula];; (*ITAG) Solyc00g049220.1.1 (e_value=4e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:13607371-13607577 transcript_region:SL2.40ch00:13607371..13607577+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048519g0001.1 protein NbS00002198g0005.1 protein ; (*GB) gi|639834|emb|CAA58823.1| (e_value=2e-84) NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=6e-71) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=5e-72) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=3e-87) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbS00002198g0006.1 protein ; (*GB) gi|639834|emb|CAA58823.1| (e_value=9e-120) NADH dehydrogenase [Solanum tuberosum];; (*SWP) sp|Q9FNN5|NDUV1_ARATH (e_value=5e-107) NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Arabidopsis thaliana GN=At5g08530 PE=2 SV=1;; (*TAIR) AT5G08530.1 (e_value=4e-108) | Symbols: CI51 | 51 kDa subunit of complex I | chr5:2759848-2761726 REVERSE LENGTH=486;; (*ITAG) Solyc02g087240.2.1 (e_value=4e-122) genomic_reference:SL2.40ch02 gene_region:44268758-44272307 transcript_region:SL2.40ch02:44268758..44272307+ go_terms:GO:0008137 functional_description:"NADH-quinone oxidoreductase F subunit family protein (AHRD V1 **** Q23KE4_TETTH); contains Interpro domain(s) IPR011537 NADH ubiquinone oxidoreductase, F subunit "; GO:0008137 NbS00023743g0001.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=9e-19) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=2e-17) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=1e-41) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00035506g0001.1 protein ; (*GB) gi|297828325|ref|XP_002882045.1| (e_value=5e-20) hypothetical protein ARALYDRAFT_483745 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G46000.1 (e_value=2e-13) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18921194-18922047 REVERSE LENGTH=208;; (*ITAG) Solyc01g094780.2.1 (e_value=5e-41) genomic_reference:SL2.40ch01 gene_region:77949879-77952501 transcript_region:SL2.40ch01:77949879..77952501- functional_description:"Unknown Protein (AHRD V1)"; NbS00011076g0004.1 protein NbC24092994g0001.1 protein ; (*GB) gi|222612694|gb|EEE50826.1| (e_value=2e-58) hypothetical protein OsJ_31236 [Oryza sativa Japonica Group];; (*SWP) sp|Q8S6N5|ACC1_ORYSJ (e_value=8e-60) Acetyl-CoA carboxylase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=3 SV=1;; (*TAIR) AT1G36180.1 (e_value=8e-59) | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:13546047-13558339 FORWARD LENGTH=2355;; (*ITAG) Solyc12g056940.1.1 (e_value=7e-66) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00050246g0001.1 protein NbS00018463g0002.1 protein NbS00025656g0001.1 protein ; (*GB) gi|147772919|emb|CAN64786.1| (e_value=2e-27) hypothetical protein VITISV_014071 [Vitis vinifera]; NbS00016687g0001.1 protein ; (*ITAG) Solyc09g057570.2.1 (e_value=5e-24) genomic_reference:SL2.40ch09 gene_region:45432130-45436612 transcript_region:SL2.40ch09:45432130..45436612- functional_description:"Mutator-like transposase (AHRD V1 ***- Q9LTL3_ARATH)"; NbS00059789g0001.1 protein NbS00011766g0006.1 protein NbS00012564g0004.1 protein NbC24220695g0001.1 protein ; (*GB) gi|255562775|ref|XP_002522393.1| (e_value=6e-23) set domain protein, putative [Ricinus communis];; (*SWP) sp|O64827|SUVR5_ARATH (e_value=7e-19) Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana GN=SUVR5 PE=1 SV=3;; (*TAIR) AT2G23740.2 (e_value=5e-20) | Symbols: | nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding | chr2:10098213-10103229 FORWARD LENGTH=1382;; (*ITAG) Solyc02g089970.2.1 (e_value=1e-42) genomic_reference:SL2.40ch02 gene_region:46223245-46232507 transcript_region:SL2.40ch02:46223245..46232507- go_terms:GO:0005634,GO:0005622 functional_description:"Histone-lysine n-methyltransferase (AHRD V1 *-*- B0XIT7_CULQU); contains Interpro domain(s) IPR001214 SET "; GO:0005634,GO:0005622 NbS00025696g0001.1 protein ; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=4e-99) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q14974|IMB1_HUMAN (e_value=8e-31) Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2;; (*TAIR) AT3G08947.1 (e_value=2e-95) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=4e-106) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00023615g0005.1 protein NbS00021712g0001.1 protein NbS00036965g0001.1 protein NbS00008571g0001.1 protein ; (*GB) gi|302141682|emb|CBI18885.3| (e_value=2e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q304B9|NCASE_ARATH (e_value=8e-48) Neutral ceramidase OS=Arabidopsis thaliana GN=At2g38010 PE=2 SV=1;; (*TAIR) AT2G38010.1 (e_value=6e-49) | Symbols: | Neutral/alkaline non-lysosomal ceramidase | chr2:15906862-15909867 FORWARD LENGTH=757;; (*ITAG) Solyc04g082190.1.1 (e_value=3e-95) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63545574-63549576 transcript_region:SL2.40ch04:63545574..63549576- go_terms:GO:0017040 functional_description:"Neutral ceramidase (AHRD V1 **** B5TWK7_HORVU); contains Interpro domain(s) IPR006823 Neutral/alkaline nonlysosomal ceramidase "; GO:0017040 NbS00004115g0003.1 protein NbS00008241g0001.1 protein ; (*GB) gi|110826035|gb|ABH01084.1| (e_value=7e-15) putative ROX1 [Nicotiana tabacum]; NbS00005628g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=7e-30) hypothetical protein [Nicotiana tabacum]; NbS00019374g0002.1 protein NbS00014011g0002.1 protein NbS00008414g0002.1 protein NbS00050287g0002.1 protein NbS00047874g0001.1 protein ; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=4e-24) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=1e-25) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=4e-20) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc11g066560.1.1 (e_value=8e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49403647-49415796 transcript_region:SL2.40ch11:49403647..49415796+ go_terms:GO:0016192,GO:0008270,GO:0005488 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 "; GO:0016192,GO:0008270,GO:0005488 NbS00005029g0002.1 protein NbS00035323g0001.1 protein ; (*GB) gi|82621130|gb|ABB86253.1| (e_value=2e-77) 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum];; (*TAIR) AT2G25910.1 (e_value=1e-65) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=341;; (*ITAG) Solyc08g065880.2.1 (e_value=3e-77) genomic_reference:SL2.40ch08 gene_region:51427066-51436156 transcript_region:SL2.40ch08:51427066..51436156+ go_terms:GO:0003676,GO:0003723,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 **-- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0003723,GO:0005622 NbS00060074g0001.1 protein ; (*ITAG) Solyc03g005640.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:457646-459016 transcript_region:SL2.40ch03:457646..459016+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00025487g0002.1 protein NbS00020452g0001.1 protein NbS00016094g0001.1 protein NbS00016094g0004.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=8e-29) Endonuclease/exonuclease/phosphatase [Medicago truncatula];; (*ITAG) Solyc00g006090.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00038180g0004.1 protein NbC25391955g0001.1 protein ; (*GB) gi|225441973|ref|XP_002271118.1| (e_value=4e-69) PREDICTED: pumilio homolog 23-like [Vitis vinifera];; (*SWP) sp|Q9C552|PUM23_ARATH (e_value=2e-56) Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1;; (*TAIR) AT1G72320.1 (e_value=2e-57) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753;; (*ITAG) Solyc03g123640.2.1 (e_value=7e-123) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00010774g0002.1 protein NbC23342240g0001.1 protein ; (*GB) gi|225470342|ref|XP_002269338.1| (e_value=5e-25) PREDICTED: CBS domain-containing protein CBSX5 [Vitis vinifera];; (*TAIR) AT5G53750.1 (e_value=7e-12) | Symbols: | CBS domain-containing protein | chr5:21817416-21818723 FORWARD LENGTH=408;; (*ITAG) Solyc02g078480.2.1 (e_value=1e-38) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00008608g0004.1 protein NbS00052035g0002.1 protein NbS00058561g0001.1 protein ; (*GB) gi|224122142|ref|XP_002330551.1| (e_value=1e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGQ9|Y4294_ARATH (e_value=1e-64) Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1;; (*TAIR) AT4G20940.1 (e_value=5e-66) | Symbols: | Leucine-rich receptor-like protein kinase family protein | chr4:11202728-11206038 FORWARD LENGTH=977;; (*ITAG) Solyc02g070000.2.1 (e_value=3e-86) genomic_reference:SL2.40ch02 gene_region:34380105-34384384 transcript_region:SL2.40ch02:34380105..34384384+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00009743g0001.1 protein ; (*ITAG) Solyc01g066330.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:66512519-66513728 transcript_region:SL2.40ch01:66512519..66513728+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012005g0001.1 protein NbS00025847g0004.1 protein NbC24698692g0001.1 protein ; (*GB) gi|147775767|emb|CAN64799.1| (e_value=3e-104) hypothetical protein VITISV_017318 [Vitis vinifera];; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=1e-88) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2;; (*TAIR) AT4G10710.1 (e_value=1e-82) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101020.2.1 (e_value=2e-114) genomic_reference:SL2.40ch01 gene_region:82648492-82651919 transcript_region:SL2.40ch01:82648492..82651919+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00003542g0001.1 protein NbC23990197g0001.1 protein ; (*GB) gi|255548037|ref|XP_002515075.1| (e_value=2e-50) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8L838|COG4_ARATH (e_value=1e-50) Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1;; (*TAIR) AT4G01400.2 (e_value=1e-51) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr4:573098-575648 REVERSE LENGTH=738;; (*ITAG) Solyc07g056010.2.1 (e_value=5e-56) genomic_reference:SL2.40ch07 gene_region:61233825-61238820 transcript_region:SL2.40ch07:61233825..61238820- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 4 (AHRD V1 ***- COG4_ARATH); contains Interpro domain(s) IPR013167 COG4 transport "; GO:0005515 NbS00032879g0003.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=1e-31) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc06g073050.2.1 (e_value=5e-33) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00017797g0001.1 protein NbS00026657g0001.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=1e-14) nam-like protein 1 [Petunia x hybrida]; NbS00019209g0001.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=9e-21) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00019209g0002.1 protein NbS00036138g0001.1 protein ; (*GB) gi|359486223|ref|XP_002265374.2| (e_value=4e-26) PREDICTED: uncharacterized protein LOC100255698 [Vitis vinifera];; (*TAIR) AT4G18530.1 (e_value=3e-21) | Symbols: | Protein of unknown function (DUF707) | chr4:10217749-10220285 FORWARD LENGTH=389;; (*ITAG) Solyc01g103170.2.1 (e_value=3e-50) genomic_reference:SL2.40ch01 gene_region:83589714-83597304 transcript_region:SL2.40ch01:83589714..83597304- go_terms:GO:0006508 functional_description:"Lysine ketoglutarate reductase trans-splicing related 1-like (AHRD V1 ***- Q5JLN0_ORYSJ); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; GO:0006508 NbS00038155g0001.1 protein NbS00001888g0001.1 protein ; (*GB) gi|225458181|ref|XP_002281211.1| (e_value=1e-62) PREDICTED: protein TIC 20-I, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=2e-62) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04940.1 (e_value=2e-63) | Symbols: TIC20 | translocon at the inner envelope membrane of chloroplasts 20 | chr1:1399588-1400616 FORWARD LENGTH=274;; (*ITAG) Solyc04g076740.2.1 (e_value=7e-65) genomic_reference:SL2.40ch04 gene_region:59228814-59231535 transcript_region:SL2.40ch04:59228814..59231535+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00016184g0001.1 protein NbS00016184g0004.1 protein ; (*GB) gi|225445228|ref|XP_002280942.1| (e_value=6e-42) PREDICTED: membrane-bound transcription factor site-1 protease [Vitis vinifera];; (*SWP) sp|Q14703|MBTP1_HUMAN (e_value=3e-23) Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=1e-34) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=2e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00051935g0001.1 protein NbS00051935g0003.1 protein ; (*GB) gi|147819295|emb|CAN68962.1| (e_value=2e-66) hypothetical protein VITISV_019277 [Vitis vinifera];; (*SWP) sp|Q9FLZ9|PP405_ARATH (e_value=2e-53) Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1;; (*TAIR) AT5G39350.1 (e_value=1e-54) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15750929-15752962 FORWARD LENGTH=677;; (*ITAG) Solyc02g088650.1.1 (e_value=1e-149) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:45249368-45251410 transcript_region:SL2.40ch02:45249368..45251410- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00052219g0001.1 protein NbS00002653g0001.1 protein NbS00025465g0202.1 protein NbS00030589g0101.1 protein NbS00027837g0001.1 protein ; (*ITAG) Solyc11g063480.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:46701410-46701718 transcript_region:SL2.40ch11:46701410..46701718- functional_description:"Unknown Protein (AHRD V1)"; NbS00025585g0001.1 protein NbC25233207g0001.1 protein ; (*GB) gi|357475983|ref|XP_003608277.1| (e_value=4e-22) 18.2 kDa class I heat shock protein [Medicago truncatula];; (*SWP) sp|O82011|HSP11_SOLPE (e_value=2e-22) 17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1;; (*TAIR) AT2G29500.1 (e_value=2e-21) | Symbols: | HSP20-like chaperones superfamily protein | chr2:12633279-12633740 REVERSE LENGTH=153;; (*ITAG) Solyc06g076540.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:43940957-43941421 transcript_region:SL2.40ch06:43940957..43941421- functional_description:"class I heat shock protein (AHRD V1 ***- Q69BI7_CARPA); contains Interpro domain(s) IPR002068 Heat shock protein Hsp20 "; NbS00006312g0003.1 protein NbS00002313g0003.1 protein NbS00037629g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=5e-13) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00005710g0001.1 protein NbS00024794g0005.1 protein NbS00015168g0002.1 protein NbS00021609g0001.1 protein NbS00035520g0002.1 protein NbS00005294g0001.1 protein NbS00005148g0003.1 protein NbS00002234g0002.1 protein ; (*GB) gi|255569587|ref|XP_002525759.1| (e_value=1e-12) meiotic recombination repair protein, putative [Ricinus communis];; (*ITAG) Solyc09g009340.1.1 (e_value=3e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00050835g0001.1 protein NbS00005092g0002.1 protein NbS00003577g0002.1 protein ; (*GB) gi|296089060|emb|CBI38763.3| (e_value=2e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G61170.1 (e_value=1e-18) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=783;; (*ITAG) Solyc01g091610.1.1 (e_value=7e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00016186g0001.1 protein NbS00031274g0002.1 protein NbS00011632g0001.1 protein NbS00022937g0001.1 protein ; (*GB) gi|225447639|ref|XP_002271384.1| (e_value=2e-34) PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Vitis vinifera];; (*TAIR) AT1G12470.1 (e_value=2e-32) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=6e-40) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00022937g0002.1 protein NbC24957264g0001.1 protein NbS00059805g0001.1 protein NbS00031493g0003.1 protein NbS00031493g0004.1 protein NbS00007496g0003.1 protein NbS00038873g0001.1 protein NbS00038873g0002.1 protein NbS00051169g0001.1 protein ; (*GB) gi|356513910|ref|XP_003525651.1| (e_value=2e-62) PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max];; (*TAIR) AT2G26890.1 (e_value=7e-52) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=2e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00052195g0002.1 protein ; (*GB) gi|224121998|ref|XP_002318725.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT1G20960.2 (e_value=4e-16) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=3e-24) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00052195g0003.1 protein ; (*GB) gi|297743788|emb|CBI36671.3| (e_value=7e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q55CI8|HELCL_DICDI (e_value=1e-14) Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1;; (*TAIR) AT2G42270.1 (e_value=8e-21) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr2:17604330-17610848 FORWARD LENGTH=2172;; (*ITAG) Solyc06g082100.2.1 (e_value=9e-30) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00016345g0001.1 protein NbS00003851g0005.1 protein NbS00018864g0001.1 protein NbS00018864g0003.1 protein NbS00013332g0003.1 protein NbS00013332g0103.1 protein NbS00017706g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=6e-14) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00017706g0002.1 protein NbS00019561g0002.1 protein ; (*GB) gi|224075299|ref|XP_002304589.1| (e_value=6e-23) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q8W4J9|RPP8_ARATH (e_value=7e-12) Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2;; (*TAIR) AT5G43470.2 (e_value=5e-13) | Symbols: RPP8, HRT, RCY1 | Disease resistance protein (CC-NBS-LRR class) family | chr5:17463130-17466658 REVERSE LENGTH=908;; (*ITAG) Solyc12g094660.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63160675-63163791 transcript_region:SL2.40ch12:63160675..63163791- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00019561g0004.1 protein ; (*GB) gi|225449466|ref|XP_002283276.1| (e_value=1e-92) PREDICTED: ribosomal RNA large subunit methyltransferase E [Vitis vinifera];; (*SWP) sp|A0LGZ0|RLME_SYNFM (e_value=1e-18) Ribosomal RNA large subunit methyltransferase E OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rlmE PE=3 SV=1;; (*TAIR) AT5G13830.1 (e_value=1e-84) | Symbols: | FtsJ-like methyltransferase family protein | chr5:4467363-4468487 FORWARD LENGTH=224; NbS00010718g0002.1 protein ; (*ITAG) Solyc02g087470.2.1 (e_value=3e-26) genomic_reference:SL2.40ch02 gene_region:44479944-44480459 transcript_region:SL2.40ch02:44479944..44480459- functional_description:"Unknown Protein (AHRD V1)"; NbS00022085g0002.1 protein NbC23616243g0001.1 protein ; (*GB) gi|296082150|emb|CBI21155.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G25060.1 (e_value=5e-38) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=1e-48) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00012706g0003.1 protein NbS00016679g0201.1 protein NbS00006009g0004.1 protein NbS00025488g0001.1 protein NbS00024943g0001.1 protein NbC23895968g0001.1 protein ; (*GB) gi|68300884|gb|AAY89374.1| (e_value=3e-55) beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae];; (*SWP) sp|Q9LIR6|BAM1_ARATH (e_value=1e-51) Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1;; (*TAIR) AT3G23920.1 (e_value=8e-53) | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575;; (*ITAG) Solyc09g091030.2.1 (e_value=1e-55) genomic_reference:SL2.40ch09 gene_region:65730190-65735790 transcript_region:SL2.40ch09:65730190..65735790+ go_terms:GO:0016161 functional_description:"Beta-amylase (AHRD V1 **** E0AE02_SOLLC); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00017718g0002.1 protein NbS00016856g0001.1 protein ; (*GB) gi|224059498|ref|XP_002299876.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g039970.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00028407g0002.1 protein NbS00028407g0005.1 protein NbC26279043g0001.1 protein ; (*GB) gi|255574215|ref|XP_002528022.1| (e_value=2e-34) ubiquitin-associated uba/ubx domain-containing protein, putative [Ricinus communis];; (*TAIR) AT1G04850.1 (e_value=1e-33) | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr1:1365311-1368706 REVERSE LENGTH=413;; (*ITAG) Solyc12g098420.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00006536g0002.1 protein ; (*GB) gi|255557375|ref|XP_002519718.1| (e_value=2e-75) Beta-glucosidase, putative [Ricinus communis];; (*SWP) sp|Q9LJN4|BXL5_ARATH (e_value=3e-51) Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2;; (*TAIR) AT3G19620.1 (e_value=3e-52) | Symbols: | Glycosyl hydrolase family protein | chr3:6815613-6818308 REVERSE LENGTH=781;; (*ITAG) Solyc10g047030.1.1 (e_value=1e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:34703285-34707424 transcript_region:SL2.40ch10:34703285..34707424+ go_terms:GO:0009044,GO:0005515 functional_description:"Beta-xylosidase 4 (AHRD V1 **** D7MRV5_ARALY); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044,GO:0005515 NbS00012430g0108.1 protein NbS00057148g0001.1 protein NbS00057148g0002.1 protein NbS00007114g0001.1 protein NbS00004519g0001.1 protein ; (*ITAG) Solyc12g098420.1.1 (e_value=9e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64267844-64273580 transcript_region:SL2.40ch12:64267844..64273580+ go_terms:GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 *-*- B8NPH7_ASPFN); contains Interpro domain(s) IPR018997 PUB domain "; GO:0005622 NbS00004519g0003.1 protein NbC24991650g0001.1 protein ; (*GB) gi|225440310|ref|XP_002262987.1| (e_value=2e-136) PREDICTED: 5-oxoprolinase-like [Vitis vinifera];; (*SWP) sp|Q9FIZ7|OPLA_ARATH (e_value=3e-134) 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1;; (*TAIR) AT5G37830.1 (e_value=3e-135) | Symbols: OXP1 | oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266;; (*ITAG) Solyc09g010560.1.1 (e_value=1e-153) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3920997-3924803 transcript_region:SL2.40ch09:3920997..3924803- go_terms:GO:0017168 functional_description:"5-oxoprolinase (ATP-hydrolyzing) (AHRD V1 **** Q1JWC8_DESAC); contains Interpro domain(s) IPR003692 Hydantoinase B/oxoprolinase "; GO:0017168 NbS00012592g0001.1 protein ; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=5e-34) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=2e-22) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=2e-23) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=3e-35) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00011789g0002.1 protein ; (*GB) gi|255562017|ref|XP_002522017.1| (e_value=2e-18) Translational activator GCN1, putative [Ricinus communis];; (*TAIR) AT1G64790.2 (e_value=4e-18) | Symbols: ILA | ILITYHIA | chr1:24065232-24083403 REVERSE LENGTH=2696;; (*ITAG) Solyc04g050520.2.1 (e_value=4e-24) genomic_reference:SL2.40ch04 gene_region:46580155-46600878 transcript_region:SL2.40ch04:46580155..46600878- go_terms:GO:0005488 functional_description:"Translational activator gcn1 (AHRD V1 **-- Q177C0_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbC24223207g0001.1 protein ; (*GB) gi|225454018|ref|XP_002281007.1| (e_value=3e-41) PREDICTED: UDP-glucuronate 4-epimerase 3-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=2e-40) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=2e-41) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc01g091200.2.1 (e_value=2e-58) genomic_reference:SL2.40ch01 gene_region:76648646-76650521 transcript_region:SL2.40ch01:76648646..76650521+ go_terms:GO:0044237,GO:0008152,GO:0005975 functional_description:"NAD dependent epimerase/dehydratase family protein expressed (AHRD V1 ***- Q2MJA7_ORYSJ); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152,GO:0005975 NbS00007640g0101.1 protein NbS00006519g0001.1 protein NbS00021149g0004.1 protein NbS00015944g0001.1 protein NbS00022287g0001.1 protein NbS00029660g0001.1 protein NbS00000679g0001.1 protein NbS00000679g0102.1 protein NbS00000578g0001.1 protein ; (*GB) gi|147767067|emb|CAN69869.1| (e_value=1e-28) hypothetical protein VITISV_036524 [Vitis vinifera]; NbS00007349g0101.1 protein NbS00007349g0102.1 protein NbS00007349g0103.1 protein NbS00058583g0001.1 protein NbS00002776g0002.1 protein ; (*GB) gi|350537283|ref|NP_001234799.1| (e_value=4e-33) cyclin dependent kinase C [Solanum lycopersicum];; (*SWP) sp|Q9LFT8|CDKC1_ARATH (e_value=4e-13) Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1;; (*TAIR) AT5G10270.1 (e_value=3e-14) | Symbols: CDKC;1 | cyclin-dependent kinase C;1 | chr5:3221715-3224674 REVERSE LENGTH=505;; (*ITAG) Solyc04g056280.2.1 (e_value=7e-36) genomic_reference:SL2.40ch04 gene_region:53113443-53125978 transcript_region:SL2.40ch04:53113443..53125978+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbC24043038g0001.1 protein ; (*GB) gi|255555301|ref|XP_002518687.1| (e_value=1e-54) d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis];; (*SWP) sp|O04130|SERA_ARATH (e_value=1e-40) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=5e-50) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc03g112070.2.1 (e_value=5e-57) genomic_reference:SL2.40ch03 gene_region:56655923-56660333 transcript_region:SL2.40ch03:56655923..56660333- go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00000400g0001.1 protein NbS00057325g0001.1 protein ; (*GB) gi|225423549|ref|XP_002274857.1| (e_value=1e-180) PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=8e-171) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=6e-172) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00057325g0002.1 protein ; (*GB) gi|357487403|ref|XP_003613989.1| (e_value=3e-72) hypothetical protein MTR_5g043450 [Medicago truncatula];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=5e-61) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=4e-62) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=2e-116) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00013553g0003.1 protein NbS00013553g0004.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00037625g0002.1 protein NbS00007827g0004.1 protein NbS00001499g0004.1 protein NbC23362311g0001.1 protein ; (*TAIR) AT4G12650.1 (e_value=2e-14) | Symbols: | Endomembrane protein 70 protein family | chr4:7468207-7470165 REVERSE LENGTH=652;; (*ITAG) Solyc07g056050.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:61269708-61271687 transcript_region:SL2.40ch07:61269708..61271687+ go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6U1D6_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00001630g0001.1 protein NbS00012958g0002.1 protein NbS00012958g0003.1 protein NbS00051185g0001.1 protein NbS00013343g0003.1 protein NbS00007582g0005.1 protein NbS00016727g0003.1 protein ; (*GB) gi|357513263|ref|XP_003626920.1| (e_value=8e-13) GRF zinc finger containing protein [Medicago truncatula];; (*ITAG) Solyc09g072730.1.1 (e_value=9e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60860048-60860654 transcript_region:SL2.40ch09:60860048..60860654- go_terms:GO:0008270 functional_description:"GRF zinc finger family protein expressed (AHRD V1 *-*- Q10CE1_ORYSJ); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00016727g0004.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=4e-29) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum];; (*ITAG) Solyc10g054410.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:50749443-50750094 transcript_region:SL2.40ch10:50749443..50750094- functional_description:"Unknown Protein (AHRD V1)"; NbS00016727g0006.1 protein ; (*GB) gi|147799024|emb|CAN72567.1| (e_value=3e-37) hypothetical protein VITISV_044177 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc06g060030.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34348153-34350204 transcript_region:SL2.40ch06:34348153..34350204- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-BR Gag-Pol polyprotein (AHRD V1 *-*- YB12B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00062128g0001.1 protein ; (*GB) gi|224090783|ref|XP_002309080.1| (e_value=3e-56) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37730.1 (e_value=5e-55) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=2e-87) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbC24093690g0001.1 protein ; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=5e-36) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|P29620|CDKD1_ORYSJ (e_value=4e-17) Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1;; (*TAIR) AT1G18040.1 (e_value=3e-13) | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent kinase D1;3 | chr1:6207128-6209299 REVERSE LENGTH=391;; (*ITAG) Solyc08g081280.2.1 (e_value=2e-36) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00008446g0001.1 protein NbS00049311g0003.1 protein NbS00005766g0001.1 protein NbS00001627g0001.1 protein ; (*GB) gi|237506885|gb|ACQ99195.1| (e_value=1e-43) betaine aldehyde dehydrogenase [Lycium barbarum];; (*SWP) sp|P17202|BADH_SPIOL (e_value=2e-34) Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT1G74920.1 (e_value=2e-33) | Symbols: ALDH10A8 | aldehyde dehydrogenase 10A8 | chr1:28139175-28142573 REVERSE LENGTH=501;; (*ITAG) Solyc03g113800.2.1 (e_value=4e-44) genomic_reference:SL2.40ch03 gene_region:57894787-57902443 transcript_region:SL2.40ch03:57894787..57902443- go_terms:GO:0004029 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbS00044916g0002.1 protein NbS00036422g0002.1 protein NbS00012688g0002.1 protein NbC24206119g0001.1 protein NbS00048172g0001.1 protein NbC24526664g0001.1 protein ; (*ITAG) Solyc11g007620.1.1 (e_value=3e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1868423-1869691 transcript_region:SL2.40ch11:1868423..1869691- functional_description:"F-box domain containing protein (AHRD V1 ***- B6TYF0_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00006970g0004.1 protein ; (*GB) gi|332322109|emb|CCA66008.1| (e_value=2e-27) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbC24395446g0001.1 protein ; (*GB) gi|224109580|ref|XP_002315242.1| (e_value=1e-73) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54JE4|ODO1_DICDI (e_value=6e-45) 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1;; (*TAIR) AT3G55410.1 (e_value=8e-73) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=2e-82) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00013676g0002.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=9e-20) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00008795g0003.1 protein NbS00039253g0001.1 protein NbC26171849g0001.1 protein ; (*ITAG) Solyc11g019920.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9781305-9788278 transcript_region:SL2.40ch11:9781305..9788278+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00005550g0003.1 protein NbS00020226g0001.1 protein ; (*GB) gi|118488331|gb|ABK95984.1| (e_value=3e-29) unknown [Populus trichocarpa];; (*SWP) sp|Q8GW20|Y5390_ARATH (e_value=2e-28) Uncharacterized protein At5g03900, chloroplastic OS=Arabidopsis thaliana GN=At5g03900 PE=1 SV=2;; (*TAIR) AT5G03900.1 (e_value=1e-29) | Symbols: | Iron-sulphur cluster biosynthesis family protein | chr5:1048338-1050999 FORWARD LENGTH=429;; (*ITAG) Solyc04g049130.2.1 (e_value=2e-30) genomic_reference:SL2.40ch04 gene_region:38898121-38915942 transcript_region:SL2.40ch04:38898121..38915942+ functional_description:"At5g03900 (Fragment) (AHRD V1 *-*- B0LQ56_ARATH); contains Interpro domain(s) IPR000361 FeS cluster biogenesis "; NbS00027187g0002.1 protein NbS00060852g0001.1 protein NbS00037326g0001.1 protein NbC23791073g0001.1 protein ; (*ITAG) Solyc11g040050.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28386181-28389979 transcript_region:SL2.40ch11:28386181..28389979- go_terms:GO:0003723 functional_description:"RNA binding protein (AHRD V1 *--* B8C201_THAPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003723 NbS00011086g0001.1 protein NbS00015083g0001.1 protein NbS00024141g0001.1 protein NbS00016605g0001.1 protein NbS00012989g0101.1 protein NbS00035057g0002.1 protein NbS00015263g0001.1 protein NbS00029271g0001.1 protein ; (*GB) gi|224102697|ref|XP_002312781.1| (e_value=6e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G27070.1 (e_value=8e-23) | Symbols: | 5'-AMP-activated protein kinase-related | chr1:9396945-9399225 REVERSE LENGTH=532;; (*ITAG) Solyc01g010470.2.1 (e_value=2e-30) genomic_reference:SL2.40ch01 gene_region:5362049-5364988 transcript_region:SL2.40ch01:5362049..5364988+ functional_description:"Isoamylase N-terminal domain containing protein (AHRD V1 ***- Q6AVV5_ORYSJ)"; NbS00006467g0002.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=5e-27) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum];; (*ITAG) Solyc10g054410.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:50749443-50750094 transcript_region:SL2.40ch10:50749443..50750094- functional_description:"Unknown Protein (AHRD V1)"; NbS00025955g0001.1 protein ; (*GB) gi|296278612|gb|ADH04270.1| (e_value=8e-90) MYC2b transcription factor [Nicotiana tabacum];; (*SWP) sp|Q39204|RAP1_ARATH (e_value=3e-41) Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2;; (*TAIR) AT1G32640.1 (e_value=3e-42) | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11799042-11800913 REVERSE LENGTH=623;; (*ITAG) Solyc08g076930.1.1 (e_value=3e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58035870-58037939 transcript_region:SL2.40ch08:58035870..58037939+ go_terms:GO:0016563,GO:0003700 functional_description:"Transcription factor (AHRD V1 *-** Q9M4A8_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0016563,GO:0003700 NbS00009682g0004.1 protein NbC23383932g0001.1 protein ; (*GB) gi|359494575|ref|XP_002267779.2| (e_value=4e-16) PREDICTED: uncharacterized protein LOC100267869 [Vitis vinifera];; (*ITAG) Solyc05g016240.2.1 (e_value=3e-27) genomic_reference:SL2.40ch05 gene_region:15260801-15268723 transcript_region:SL2.40ch05:15260801..15268723- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00031564g0002.1 protein NbS00029407g0001.1 protein NbS00004295g0011.1 protein NbS00004295g0013.1 protein ; (*GB) gi|57013962|ref|YP_173434.1| (e_value=2e-20) hypothetical protein NitaMp095 [Nicotiana tabacum];; (*ITAG) Solyc08g036500.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:25575333-25575776 transcript_region:SL2.40ch08:25575333..25575776- functional_description:"Uncharacterized mitochondrial protein AtMg00660 (AHRD V1 **-- M660_ARATH)"; NbS00004295g0016.1 protein NbS00004295g0004.1 protein ; (*GB) gi|296087061|emb|CBI33435.3| (e_value=3e-23) unnamed protein product [Vitis vinifera]; NbS00004295g0008.1 protein NbS00016940g0001.1 protein NbS00020661g0003.1 protein NbS00016508g0001.1 protein NbS00007037g0002.1 protein NbS00021523g0001.1 protein NbS00010789g0001.1 protein ; (*GB) gi|225451340|ref|XP_002274609.1| (e_value=4e-123) PREDICTED: uncharacterized protein LOC100248755 [Vitis vinifera];; (*TAIR) AT3G04340.1 (e_value=5e-104) | Symbols: emb2458 | FtsH extracellular protease family | chr3:1146943-1153341 REVERSE LENGTH=1320;; (*ITAG) Solyc02g032960.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:20240323-20261625 transcript_region:SL2.40ch02:20240323..20261625+ go_terms:GO:0016887 functional_description:"Cell division protease FtsH homolog (AHRD V1 *--- C5NVJ0_9BACL); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0016887 NbS00056702g0001.1 protein ; (*ITAG) Solyc11g068900.1.1 (e_value=1e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50552542-50553312 transcript_region:SL2.40ch11:50552542..50553312- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 *-*- Q2RAC3_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbC23821798g0001.1 protein ; (*GB) gi|13925881|gb|AAK49454.1|AF304374_1 (e_value=2e-45) cellulose synthase catalytic subunit [Nicotiana alata];; (*SWP) sp|Q9SJ22|CESA9_ARATH (e_value=3e-42) Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1;; (*TAIR) AT2G21770.1 (e_value=2e-43) | Symbols: CESA9, CESA09 | cellulose synthase A9 | chr2:9284837-9289495 FORWARD LENGTH=1088;; (*ITAG) Solyc04g071650.2.1 (e_value=1e-47) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00014569g0101.1 protein NbS00009871g0003.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=1e-21) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00061394g0002.1 protein NbS00006175g0001.1 protein NbS00000314g0003.1 protein ; (*GB) gi|297736774|emb|CBI25975.3| (e_value=7e-76) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G48090.1 (e_value=1e-68) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009350.2.1 (e_value=3e-105) genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)"; NbS00060045g0001.1 protein NbS00000456g0101.1 protein NbS00000911g0003.1 protein NbS00019711g0002.1 protein NbC23897726g0001.1 protein ; (*GB) gi|357455635|ref|XP_003598098.1| (e_value=3e-50) Phospholipid-translocating P-type ATPase flippase family protein [Medicago truncatula];; (*SWP) sp|P98204|ALA1_ARATH (e_value=5e-46) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=4e-47) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc01g096930.2.1 (e_value=3e-58) genomic_reference:SL2.40ch01 gene_region:79693945-79699772 transcript_region:SL2.40ch01:79693945..79699772+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00029647g0001.1 protein ; (*GB) gi|53791839|dbj|BAD53905.1| (e_value=7e-18) RING zinc finger protein-like [Oryza sativa Japonica Group];; (*SWP) sp|Q5XF85|ATL42_ARATH (e_value=1e-18) E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2;; (*TAIR) AT4G28890.1 (e_value=9e-20) | Symbols: | RING/U-box superfamily protein | chr4:14256437-14257735 REVERSE LENGTH=432;; (*ITAG) Solyc07g007440.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:2158269-2159531 transcript_region:SL2.40ch07:2158269..2159531+ go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 ***- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00011480g0001.1 protein NbS00025663g0001.1 protein NbS00016127g0002.1 protein NbS00006199g0002.1 protein NbS00038686g0002.1 protein NbS00037612g0002.1 protein NbC24473429g0001.1 protein ; (*GB) gi|225443484|ref|XP_002270251.1| (e_value=3e-42) PREDICTED: hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase [Vitis vinifera];; (*TAIR) AT1G32910.1 (e_value=2e-36) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:11925426-11926908 FORWARD LENGTH=464;; (*ITAG) Solyc02g079490.2.1 (e_value=4e-50) genomic_reference:SL2.40ch02 gene_region:38599996-38602372 transcript_region:SL2.40ch02:38599996..38602372- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (AHRD V1 **-* D1GJ94_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00036882g0001.1 protein ; (*GB) gi|255556649|ref|XP_002519358.1| (e_value=6e-22) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc01g102880.1.1 (e_value=1e-66) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83313053-83324485 transcript_region:SL2.40ch01:83313053..83324485- go_terms:GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 NbS00046291g0002.1 protein NbS00009767g0002.1 protein ; (*GB) gi|316995995|dbj|BAD83417.2| (e_value=4e-26) maturase-related protein [Nicotiana tabacum];; (*ITAG) ATMG00520.1 (e_value=2e-24) | Symbols: MATR | Intron maturase, type II family protein | chrM:144294-146312 REVERSE LENGTH=672; NbS00038330g0002.1 protein ; (*GB) gi|225427938|ref|XP_002277315.1| (e_value=2e-27) PREDICTED: magnesium transporter NIPA2 [Vitis vinifera];; (*TAIR) AT2G21120.1 (e_value=1e-21) | Symbols: | Protein of unknown function (DUF803) | chr2:9052103-9054266 REVERSE LENGTH=328;; (*ITAG) Solyc10g054930.1.1 (e_value=4e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:51599205-51603491 transcript_region:SL2.40ch10:51599205..51603491+ functional_description:"DUF803 domain membrane protein (AHRD V1 **-- C5FBJ1_NANOT); contains Interpro domain(s) IPR008521 Protein of unknown function DUF803 "; NbC24280825g0001.1 protein ; (*ITAG) Solyc01g109730.1.1 (e_value=3e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019238g0003.1 protein ; (*GB) gi|357494973|ref|XP_003617775.1| (e_value=3e-15) hypothetical protein MTR_5g095330 [Medicago truncatula]; NbC24645317g0001.1 protein ; (*GB) gi|225459601|ref|XP_002285869.1| (e_value=1e-91) PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=2e-75) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=3e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00000395g0002.1 protein NbS00020281g0001.1 protein NbS00051509g0001.1 protein NbS00012105g0002.1 protein NbS00000579g0004.1 protein NbS00011592g0002.1 protein NbS00023524g0004.1 protein NbS00016795g0001.1 protein NbS00046450g0001.1 protein NbS00005955g0001.1 protein NbS00060698g0001.1 protein NbS00033185g0002.1 protein ; (*GB) gi|225434359|ref|XP_002276671.1| (e_value=1e-90) PREDICTED: uncharacterized protein LOC100265602 [Vitis vinifera];; (*TAIR) AT2G45260.1 (e_value=1e-77) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=2e-68) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00008553g0001.1 protein ; (*GB) gi|157835621|pdb|2P5Q|A (e_value=7e-62) Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form;; (*SWP) sp|Q9LEF0|GPX4_MESCR (e_value=5e-56) Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1;; (*TAIR) AT1G63460.1 (e_value=7e-55) | Symbols: GPX8, ATGPX8 | glutathione peroxidase 8 | chr1:23535118-23536326 FORWARD LENGTH=167;; (*ITAG) Solyc12g056240.1.1 (e_value=3e-63) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:47561479-47563847 transcript_region:SL2.40ch12:47561479..47563847- go_terms:GO:0055114 functional_description:"Glutathione peroxidase (AHRD V1 ***- B9GKI5_POPTR); contains Interpro domain(s) IPR000889 Glutathione peroxidase "; GO:0055114 NbS00061564g0001.1 protein NbC24627692g0001.1 protein ; (*GB) gi|255545222|ref|XP_002513672.1| (e_value=7e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g056210.2.1 (e_value=3e-23) genomic_reference:SL2.40ch05 gene_region:64715534-64721779 transcript_region:SL2.40ch05:64715534..64721779- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00029786g0003.1 protein NbS00009542g0001.1 protein NbS00022966g0101.1 protein NbS00043646g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-52) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00037790g0001.1 protein NbS00006272g0003.1 protein NbS00006272g0005.1 protein NbS00010831g0003.1 protein NbS00016947g0001.1 protein NbS00000050g0001.1 protein NbS00000050g0003.1 protein ; (*GB) gi|255553667|ref|XP_002517874.1| (e_value=2e-65) phospholipid-transporting atpase, putative [Ricinus communis];; (*SWP) sp|P98205|ALA2_ARATH (e_value=3e-61) Phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1;; (*TAIR) AT5G44240.2 (e_value=2e-62) | Symbols: ALA2 | aminophospholipid ATPase 2 | chr5:17817619-17823598 FORWARD LENGTH=1107;; (*ITAG) Solyc11g017190.1.1 (e_value=3e-85) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:8004128-8012853 transcript_region:SL2.40ch11:8004128..8012853+ go_terms:GO:0016020 functional_description:"ATPase (AHRD V1 ***- Q0WQF8_ARATH); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00040887g0002.1 protein NbS00008825g0002.1 protein ; (*TAIR) AT5G05020.1 (e_value=3e-11) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr5:1481084-1481548 REVERSE LENGTH=154;; (*ITAG) Solyc09g072770.1.1 (e_value=2e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60943399-60944010 transcript_region:SL2.40ch09:60943399..60944010+ functional_description:"mRNA clone RAFL22-93-M12 (Fragment) (AHRD V1 *-*- Q67ZI7_ARATH)"; NbS00004613g0001.1 protein NbS00004613g0005.1 protein NbS00006018g0001.1 protein NbS00006018g0003.1 protein NbS00022973g0001.1 protein NbS00021637g0001.1 protein NbS00016081g0004.1 protein NbS00017495g0001.1 protein NbS00017495g0003.1 protein NbS00036382g0002.1 protein NbS00049680g0002.1 protein ; (*GB) gi|307136462|gb|ADN34267.1| (e_value=4e-145) methylmalonate-semialdehyde dehydrogenase [Cucumis melo subsp. melo];; (*SWP) sp|Q0WM29|MMSA_ARATH (e_value=1e-128) Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2;; (*TAIR) AT2G14170.3 (e_value=8e-130) | Symbols: ALDH6B2 | aldehyde dehydrogenase 6B2 | chr2:5977851-5981899 REVERSE LENGTH=595;; (*ITAG) Solyc01g106080.2.1 (e_value=1e-135) genomic_reference:SL2.40ch01 gene_region:85825319-85831189 transcript_region:SL2.40ch01:85825319..85831189- go_terms:GO:0004491 functional_description:"Methylmalonate-semialdehyde dehydrogenase (AHRD V1 **** D3BUA7_POLPA); contains Interpro domain(s) IPR010061 Methylmalonate-semialdehyde dehydrogenase IPR015590 Aldehyde dehydrogenase "; GO:0004491 NbS00036153g0002.1 protein NbS00036153g0003.1 protein NbS00029085g0005.1 protein ; (*GB) gi|225442904|ref|XP_002264123.1| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Vitis vinifera];; (*SWP) sp|Q9LSB8|PP235_ARATH (e_value=0.0) Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2;; (*TAIR) AT3G15930.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:5387444-5389690 FORWARD LENGTH=687;; (*ITAG) Solyc03g116840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbS00009448g0002.1 protein NbS00009448g0003.1 protein NbS00009448g0004.1 protein NbS00036841g0002.1 protein NbS00018211g0002.1 protein NbS00007009g0001.1 protein ; (*ITAG) Solyc02g086130.2.1 (e_value=5e-22) genomic_reference:SL2.40ch02 gene_region:43474986-43479696 transcript_region:SL2.40ch02:43474986..43479696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001526g0201.1 protein NbC23907220g0001.1 protein ; (*GB) gi|255563544|ref|XP_002522774.1| (e_value=7e-43) E3 ubiquitin protein ligase upl2, putative [Ricinus communis];; (*SWP) sp|Q8GY23|UPL1_ARATH (e_value=4e-35) E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3;; (*TAIR) AT1G55860.1 (e_value=3e-36) | Symbols: UPL1 | ubiquitin-protein ligase 1 | chr1:20879900-20895393 REVERSE LENGTH=3930;; (*ITAG) Solyc07g065630.2.1 (e_value=4e-35) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbC24224834g0001.1 protein ; (*GB) gi|255575143|ref|XP_002528476.1| (e_value=2e-47) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G47010.2 (e_value=4e-47) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17030.1); Has 72 Blast hits to 72 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:19317505-19319252 FORWARD LENGTH=493;; (*ITAG) Solyc07g062090.1.1 (e_value=4e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:62135492-62137556 transcript_region:SL2.40ch07:62135492..62137556- functional_description:"Os05g0272200 protein (Fragment) (AHRD V1 *-*- Q0DJJ5_ORYSJ)"; NbS00041030g0004.1 protein NbC24334085g0001.1 protein ; (*GB) gi|297742322|emb|CBI34471.3| (e_value=3e-74) unnamed protein product [Vitis vinifera];; (*SWP) sp|A7PZL3|PGLR_VITVI (e_value=3e-33) Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1;; (*TAIR) AT4G23820.1 (e_value=9e-67) | Symbols: | Pectin lyase-like superfamily protein | chr4:12397217-12400050 REVERSE LENGTH=444;; (*ITAG) Solyc08g082170.2.1 (e_value=2e-87) genomic_reference:SL2.40ch08 gene_region:62196569-62202288 transcript_region:SL2.40ch08:62196569..62202288- go_terms:GO:0005975 functional_description:"Glycoside hydrolase family 28 protein/polygalacturonase family protein (AHRD V1 **-- Q1PF10_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00046883g0001.1 protein NbS00000391g0002.1 protein NbC23979561g0001.1 protein ; (*GB) gi|110676572|gb|ABG85154.1| (e_value=9e-37) RhoGAP1 [Nicotiana tabacum];; (*ITAG) Solyc11g068520.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50302920-50308182 transcript_region:SL2.40ch11:50302920..50308182+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00033347g0001.1 protein NbS00038961g0001.1 protein ; (*ITAG) Solyc12g017840.1.1 (e_value=6e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:7545973-7550927 transcript_region:SL2.40ch12:7545973..7550927+ go_terms:GO:0006950 functional_description:"Protein kinase family protein (AHRD V1 ***- Q1PF03_ARATH); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbC24042736g0001.1 protein ; (*GB) gi|75104359|sp|Q5BQN5.1|WAP_SOLLC (e_value=2e-29) RecName: Full=WPP domain-associated protein;; (*SWP) sp|Q5BQN5|WAP_SOLLC (e_value=6e-31) WPP domain-associated protein (Fragment) OS=Solanum lycopersicum GN=WAP PE=1 SV=1;; (*ITAG) Solyc02g024000.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:15419890-15424604 transcript_region:SL2.40ch02:15419890..15424604- functional_description:"WPP domain-associated protein (Fragment) (AHRD V1 ***- WAP_SOLLC)"; NbS00004218g0001.1 protein NbC26066788g0001.1 protein NbS00011213g0001.1 protein NbS00033554g0001.1 protein ; (*GB) gi|224069244|ref|XP_002326310.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q91WF7|FIG4_MOUSE (e_value=3e-110) Polyphosphoinositide phosphatase OS=Mus musculus GN=Fig4 PE=1 SV=1;; (*TAIR) AT3G43220.2 (e_value=0.0) | Symbols: | Phosphoinositide phosphatase family protein | chr3:15197453-15202653 REVERSE LENGTH=721;; (*ITAG) Solyc07g017430.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:6923243-6960956 transcript_region:SL2.40ch07:6923243..6960956- go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- B2WG36_PYRTR); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00047808g0004.1 protein ; (*ITAG) Solyc11g008880.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3054418-3056230 transcript_region:SL2.40ch11:3054418..3056230- functional_description:"Wiscott-Aldrich syndrome C-terminal (AHRD V1 ***- Q2HW10_MEDTR); contains Interpro domain(s) IPR000095 PAK-box/P21-Rho-binding "; NbS00043367g0002.1 protein NbS00027962g0003.1 protein NbS00050119g0001.1 protein NbS00028297g0001.1 protein ; (*GB) gi|224118338|ref|XP_002317794.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=9e-98) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=7e-99) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g082830.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46223670-46226040 transcript_region:SL2.40ch03:46223670..46226040- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00041737g0001.1 protein NbS00010352g0001.1 protein NbS00057898g0001.1 protein ; (*GB) gi|225440226|ref|XP_002278583.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100249911 [Vitis vinifera];; (*TAIR) AT3G56810.1 (e_value=2e-13) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:21036927-21038927 REVERSE LENGTH=332;; (*ITAG) Solyc08g067000.2.1 (e_value=6e-34) genomic_reference:SL2.40ch08 gene_region:53099868-53103410 transcript_region:SL2.40ch08:53099868..53103410+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000614g0003.1 protein NbS00001282g0001.1 protein NbS00005788g0002.1 protein NbS00005072g0002.1 protein NbS00043211g0002.1 protein ; (*GB) gi|356531605|ref|XP_003534367.1| (e_value=1e-29) PREDICTED: conserved oligomeric Golgi complex subunit 7-like [Glycine max];; (*TAIR) AT5G51430.1 (e_value=6e-27) | Symbols: EYE | conserved oligomeric Golgi complex component-related / COG complex component-related | chr5:20887044-20890795 REVERSE LENGTH=836;; (*ITAG) Solyc05g006950.2.1 (e_value=3e-40) genomic_reference:SL2.40ch05 gene_region:1542784-1548453 transcript_region:SL2.40ch05:1542784..1548453+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 7 (AHRD V1 ***- COG7_MOUSE); contains Interpro domain(s) IPR019335 Conserved oligomeric Golgi complex, subunit 7 "; GO:0005515 NbS00043211g0003.1 protein NbS00002407g0202.1 protein NbS00020765g0002.1 protein NbS00048557g0001.1 protein NbS00027545g0002.1 protein ; (*GB) gi|359484237|ref|XP_003633087.1| (e_value=2e-109) PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1-like [Vitis vinifera];; (*TAIR) AT3G43300.2 (e_value=7e-91) | Symbols: ATMIN7 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1727;; (*ITAG) Solyc12g017830.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00035022g0001.1 protein ; (*GB) gi|225448715|ref|XP_002280870.1| (e_value=5e-65) PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform 1 [Vitis vinifera];; (*SWP) sp|Q55GS2|SCY1_DICDI (e_value=1e-13) Probable inactive serine/threonine-protein kinase scy1 OS=Dictyostelium discoideum GN=scy1 PE=3 SV=1;; (*TAIR) AT2G40730.1 (e_value=4e-66) | Symbols: | Protein kinase family protein with ARM repeat domain | chr2:16990083-16996072 REVERSE LENGTH=798;; (*ITAG) Solyc05g052200.2.1 (e_value=6e-72) genomic_reference:SL2.40ch05 gene_region:61618463-61634698 transcript_region:SL2.40ch05:61618463..61634698+ go_terms:GO:0005515 functional_description:"Protein kinase (AHRD V1 ***- A8HT40_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00011116g0002.1 protein NbS00006254g0001.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=8e-16) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*TAIR) AT1G01090.1 (e_value=1e-15) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00001104g0001.1 protein NbS00014037g0004.1 protein NbS00058855g0001.1 protein ; (*GB) gi|147858508|emb|CAN81388.1| (e_value=4e-27) hypothetical protein VITISV_015423 [Vitis vinifera];; (*TAIR) AT1G48090.1 (e_value=2e-25) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=8e-54) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00012108g0001.1 protein NbS00052899g0001.1 protein NbC24873641g0001.1 protein ; (*GB) gi|380691530|emb|CCA60858.1| (e_value=2e-86) phosphoenolpyruvate carboxykinase, partial [Alloteropsis cimicina];; (*SWP) sp|Q9T074|PCKA_ARATH (e_value=5e-85) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1;; (*TAIR) AT4G37870.1 (e_value=4e-86) | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671;; (*ITAG) Solyc04g076880.2.1 (e_value=2e-88) genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising "; GO:0004612,GO:0042802 NbS00042463g0001.1 protein NbS00016307g0201.1 protein NbS00016307g0202.1 protein NbS00016307g0203.1 protein NbS00023695g0003.1 protein NbS00014672g0001.1 protein ; (*GB) gi|224108982|ref|XP_002315038.1| (e_value=3e-21) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=2e-20) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT5G17260.1 (e_value=4e-22) | Symbols: anac086, NAC086 | NAC domain containing protein 86 | chr5:5675323-5677912 REVERSE LENGTH=476;; (*ITAG) Solyc06g073050.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00048656g0001.1 protein NbS00014207g0001.1 protein ; (*GB) gi|332322086|emb|CCA65978.1| (e_value=2e-22) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc05g021350.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00018044g0001.1 protein NbC25394177g0001.1 protein ; (*GB) gi|169977330|emb|CAQ18912.1| (e_value=3e-100) domains rearranged methyltransferase [Nicotiana sylvestris];; (*SWP) sp|Q9M548|DRM2_ARATH (e_value=2e-56) DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1;; (*TAIR) AT5G14620.1 (e_value=1e-57) | Symbols: DRM2, DMT7 | domains rearranged methyltransferase 2 | chr5:4715429-4718578 REVERSE LENGTH=626;; (*ITAG) Solyc02g062740.2.1 (e_value=1e-100) genomic_reference:SL2.40ch02 gene_region:29084337-29096121 transcript_region:SL2.40ch02:29084337..29096121+ go_terms:GO:0003886 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "; GO:0003886 NbS00015424g0001.1 protein NbS00001766g0004.1 protein NbS00006562g0003.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=6e-21) RNase H family protein [Solanum demissum];; (*ITAG) Solyc10g047890.1.1 (e_value=8e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00003539g0002.1 protein NbS00038017g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-19) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00043961g0001.1 protein ; (*GB) gi|212721536|ref|NP_001132582.1| (e_value=3e-58) uncharacterized protein LOC100194053 [Zea mays];; (*SWP) sp|Q8H1Q1|TL225_ARATH (e_value=7e-54) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1;; (*TAIR) AT1G12250.2 (e_value=7e-56) | Symbols: | Pentapeptide repeat-containing protein | chr1:4159623-4161269 FORWARD LENGTH=206;; (*ITAG) Solyc08g079110.2.1 (e_value=4e-61) genomic_reference:SL2.40ch08 gene_region:59918803-59923661 transcript_region:SL2.40ch08:59918803..59923661+ functional_description:"Pentapeptide repeat (AHRD V1 *-*- Q4C7L8_CROWT); contains Interpro domain(s) IPR001646 Pentapeptide repeat "; NbS00005557g0001.1 protein NbS00004481g0001.1 protein NbS00034305g0001.1 protein NbS00031846g0001.1 protein NbS00013406g0001.1 protein NbS00040931g0002.1 protein NbS00040931g0003.1 protein NbS00025105g0002.1 protein NbS00041752g0001.1 protein NbS00030553g0004.1 protein NbS00037107g0001.1 protein NbS00040599g0001.1 protein ; (*ITAG) Solyc02g030400.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:16412076-16412453 transcript_region:SL2.40ch02:16412076..16412453+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040599g0003.1 protein NbS00011879g0001.1 protein NbS00004226g0001.1 protein ; (*GB) gi|94466657|emb|CAJ44457.1| (e_value=2e-33) ALY protein [Nicotiana benthamiana];; (*TAIR) AT5G02530.2 (e_value=1e-14) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=290;; (*ITAG) Solyc10g086400.1.1 (e_value=2e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00016965g0001.1 protein NbS00048084g0001.1 protein ; (*GB) gi|2582381|gb|AAC49874.1| (e_value=0.0) cation-chloride co-transporter [Nicotiana tabacum];; (*SWP) sp|Q2UVJ5|CCC1_ARATH (e_value=0.0) Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1;; (*TAIR) AT1G30450.2 (e_value=0.0) | Symbols: CCC1, ATCCC1, HAP5 | cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975;; (*ITAG) Solyc02g070290.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:34640637-34656865 transcript_region:SL2.40ch02:34640637..34656865- go_terms:GO:0015379 functional_description:"Solute carrier family 12 (Potassium/chloride transporters) member 6 (AHRD V1 **** Q0IHX0_XENTR); contains Interpro domain(s) IPR004842 Na/K/Cl co-transporter superfamily "; GO:0015379 NbS00042499g0001.1 protein NbS00005983g0002.1 protein ; (*GB) gi|224086336|ref|XP_002307853.1| (e_value=2e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6NPD7|NUD10_ARATH (e_value=2e-42) Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1;; (*TAIR) AT4G25434.1 (e_value=2e-43) | Symbols: ATNUDT10, NUDT10 | nudix hydrolase homolog 10 | chr4:13004043-13005771 REVERSE LENGTH=277;; (*ITAG) Solyc10g005950.2.1 (e_value=1e-57) genomic_reference:SL2.40ch10 gene_region:733326-738148 transcript_region:SL2.40ch10:733326..738148+ go_terms:GO:0051287,GO:0047631 functional_description:"Nudix hydrolase 2 (AHRD V1 **-- B6U183_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0051287,GO:0047631 NbS00025145g0001.1 protein NbS00019601g0005.1 protein NbS00015620g0004.1 protein NbC23415109g0001.1 protein ; (*GB) gi|356517726|ref|XP_003527537.1| (e_value=7e-16) PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Glycine max];; (*ITAG) Solyc07g043270.2.1 (e_value=9e-26) genomic_reference:SL2.40ch07 gene_region:54255106-54265427 transcript_region:SL2.40ch07:54255106..54265427- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 4 (AHRD V1 **-- FRS4_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00044059g0003.1 protein NbS00020305g0002.1 protein NbS00020305g0101.1 protein NbS00008284g0002.1 protein ; (*GB) gi|224073361|ref|XP_002304084.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZP55|DRP4C_ARATH (e_value=3e-44) Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1;; (*TAIR) AT1G60500.1 (e_value=2e-45) | Symbols: DRP4C | Dynamin related protein 4C | chr1:22291582-22293822 FORWARD LENGTH=669;; (*ITAG) Solyc11g069980.1.1 (e_value=5e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51657900-51660731 transcript_region:SL2.40ch11:51657900..51660731+ go_terms:GO:0005525 functional_description:"Interferon-induced GTP-binding protein Mx (Fragment) (AHRD V1 *--- MX_PERFL); contains Interpro domain(s) IPR015577 Interferon-induced Mx protein "; GO:0005525 NbS00023753g0102.1 protein NbS00039999g0006.1 protein NbC24924342g0001.1 protein NbS00020920g0002.1 protein NbS00010327g0004.1 protein NbS00010327g0005.1 protein NbS00000934g0001.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=9e-38) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00053047g0002.1 protein NbS00024368g0002.1 protein NbS00000583g0001.1 protein NbC23351942g0001.1 protein ; (*GB) gi|183238710|gb|ACC60981.1| (e_value=7e-26) beta-galactosidase 1 precursor [Petunia x hybrida];; (*SWP) sp|P45582|BGAL_ASPOF (e_value=6e-25) Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1;; (*TAIR) AT5G56870.1 (e_value=3e-24) | Symbols: BGAL4 | beta-galactosidase 4 | chr5:23004284-23008410 FORWARD LENGTH=724;; (*ITAG) Solyc06g062580.2.1 (e_value=5e-29) genomic_reference:SL2.40ch06 gene_region:35886685-35893053 transcript_region:SL2.40ch06:35886685..35893053+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B2LYJ3_PETHY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00011564g0001.1 protein NbS00049304g0001.1 protein ; (*GB) gi|255556614|ref|XP_002519341.1| (e_value=1e-16) Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis];; (*TAIR) AT1G48310.1 (e_value=4e-15) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=3e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00000364g0001.1 protein NbS00032575g0001.1 protein NbS00006073g0004.1 protein NbS00005589g0002.1 protein NbS00004754g0002.1 protein NbS00015650g0003.1 protein NbS00015650g0004.1 protein ; (*GB) gi|359479583|ref|XP_002275680.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=6e-141) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=5e-142) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007300.1.1 (e_value=3e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00011109g0001.1 protein ; (*GB) gi|147787708|emb|CAN63054.1| (e_value=1e-14) hypothetical protein VITISV_034229 [Vitis vinifera]; NbS00011355g0101.1 protein NbS00024391g0004.1 protein NbS00025890g0002.1 protein ; (*GB) gi|224093466|ref|XP_002309924.1| (e_value=8e-14) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7V3|PMTQ_ARATH (e_value=2e-13) Probable methyltransferase PMT26 OS=Arabidopsis thaliana GN=At5g64030 PE=1 SV=1;; (*TAIR) AT5G64030.1 (e_value=2e-14) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829;; (*ITAG) Solyc04g063230.2.1 (e_value=2e-20) genomic_reference:SL2.40ch04 gene_region:54489487-54494561 transcript_region:SL2.40ch04:54489487..54494561- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00032622g0002.1 protein NbS00010100g0002.1 protein ; (*GB) gi|18398123|ref|NP_565388.1| (e_value=5e-49) uncharacterized protein [Arabidopsis thaliana];; (*SWP) sp|P43557|FMP32_YEAST (e_value=4e-14) Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FMP32 PE=1 SV=1;; (*TAIR) AT2G16460.1 (e_value=1e-51) | Symbols: | Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230;; (*ITAG) Solyc02g084560.2.1 (e_value=5e-53) genomic_reference:SL2.40ch02 gene_region:42218984-42222355 transcript_region:SL2.40ch02:42218984..42222355+ go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00015776g0001.1 protein ; (*GB) gi|332322086|emb|CCA65978.1| (e_value=3e-13) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00017182g0102.1 protein NbS00017182g0108.1 protein NbS00006409g0002.1 protein ; (*GB) gi|225446289|ref|XP_002267226.1| (e_value=4e-37) PREDICTED: F-box protein At5g07610 [Vitis vinifera];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=9e-22) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=7e-23) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=3e-51) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00052936g0001.1 protein ; (*GB) gi|225442611|ref|XP_002284502.1| (e_value=1e-78) PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Vitis vinifera];; (*SWP) sp|P46607|HGL2_ARATH (e_value=3e-66) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.1 (e_value=2e-67) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747;; (*ITAG) Solyc03g120620.2.1 (e_value=6e-121) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00011687g0004.1 protein ; (*GB) gi|326489346|dbj|BAK01656.1| (e_value=6e-41) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q43844|NDUS7_SOLTU (e_value=2e-41) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=3e-41) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=2e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbC23322059g0001.1 protein ; (*ITAG) Solyc11g017200.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8016371-8020103 transcript_region:SL2.40ch11:8016371..8020103- go_terms:GO:0005488 functional_description:"TPR repeat (AHRD V1 *--- Q31NR5_SYNE7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00022254g0001.1 protein NbS00026974g0001.1 protein ; (*GB) gi|224074488|ref|XP_002304379.1| (e_value=8e-40) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g075760.2.1 (e_value=3e-48) genomic_reference:SL2.40ch08 gene_region:57043909-57049556 transcript_region:SL2.40ch08:57043909..57049556+ functional_description:"CYCLOPS (AHRD V1 ***- A7TUE1_MEDTR)"; NbS00007111g0003.1 protein NbS00003662g0004.1 protein NbS00007252g0003.1 protein NbS00007908g0002.1 protein ; (*GB) gi|225426122|ref|XP_002272642.1| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100241699 [Vitis vinifera];; (*TAIR) AT1G64065.1 (e_value=2e-30) | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:23778628-23779272 FORWARD LENGTH=214;; (*ITAG) Solyc01g095170.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:78291091-78292012 transcript_region:SL2.40ch01:78291091..78292012+ functional_description:"Harpin-induced protein (AHRD V1 ***- B6SP51_MAIZE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00015114g0001.1 protein ; (*GB) gi|224096790|ref|XP_002310737.1| (e_value=2e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50520.1 (e_value=1e-42) | Symbols: | Phosphoglycerate mutase family protein | chr3:18748058-18749418 FORWARD LENGTH=230;; (*ITAG) Solyc02g065080.2.1 (e_value=8e-48) genomic_reference:SL2.40ch02 gene_region:30825650-30835753 transcript_region:SL2.40ch02:30825650..30835753- go_terms:GO:0016868 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (AHRD V1 *-*- GPMA_METS4); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0016868 NbS00003363g0003.1 protein NbS00003175g0101.1 protein NbS00021924g0101.1 protein NbS00021924g0102.1 protein NbS00045717g0003.1 protein NbC25141560g0001.1 protein ; (*ITAG) Solyc04g074110.2.1 (e_value=1e-15) genomic_reference:SL2.40ch04 gene_region:57711282-57714900 transcript_region:SL2.40ch04:57711282..57714900+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7JXX9_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00012704g0003.1 protein ; (*GB) gi|62867584|emb|CAI84657.1| (e_value=8e-103) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q9M1Y3|SKI35_ARATH (e_value=3e-89) F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1;; (*TAIR) AT3G59910.1 (e_value=2e-90) | Symbols: | Ankyrin repeat family protein | chr3:22130779-22133033 REVERSE LENGTH=611;; (*ITAG) Solyc08g015780.2.1 (e_value=1e-104) genomic_reference:SL2.40ch08 gene_region:5497369-5503211 transcript_region:SL2.40ch08:5497369..5503211- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00019080g0001.1 protein ; (*GB) gi|225432236|ref|XP_002270713.1| (e_value=3e-49) PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera];; (*SWP) sp|Q8RXW0|Y3761_ARATH (e_value=6e-44) Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1;; (*TAIR) AT3G17611.2 (e_value=3e-46) | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 | chr3:6025454-6026173 FORWARD LENGTH=239;; (*ITAG) Solyc07g042930.2.1 (e_value=2e-55) genomic_reference:SL2.40ch07 gene_region:53809257-53811891 transcript_region:SL2.40ch07:53809257..53811891+ go_terms:GO:0016021,GO:0005622 functional_description:"Rhomboid domain-containing protein 1 (AHRD V1 *-*- B5X3K7_SALSA); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021,GO:0005622 NbS00013664g0101.1 protein NbS00005820g0002.1 protein NbS00036565g0001.1 protein ; (*GB) gi|359481971|ref|XP_003632699.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FMQ1|PP376_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1;; (*TAIR) AT5G12100.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:3911388-3913838 FORWARD LENGTH=816;; (*ITAG) Solyc12g099840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65162719-65165091 transcript_region:SL2.40ch12:65162719..65165091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031936g0001.1 protein NbS00017371g0002.1 protein NbS00013732g0001.1 protein NbS00037973g0001.1 protein NbS00000370g0204.1 protein NbS00003255g0101.1 protein NbS00003255g0103.1 protein NbS00016784g0001.1 protein NbS00016784g0002.1 protein NbS00042179g0001.1 protein NbC23186771g0001.1 protein ; (*GB) gi|19568935|gb|AAL91978.1|AF483209_1 (e_value=1e-21) putative trehalose synthase [Solanum tuberosum];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=6e-19) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=5e-20) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc07g055300.2.1 (e_value=9e-24) genomic_reference:SL2.40ch07 gene_region:60708023-60714104 transcript_region:SL2.40ch07:60708023..60714104+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A1RU70_PYRIL); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00025726g0001.1 protein ; (*GB) gi|359488197|ref|XP_002271823.2| (e_value=5e-53) PREDICTED: protease Do-like 7-like [Vitis vinifera];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=2e-50) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=2e-51) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc02g091410.2.1 (e_value=3e-60) genomic_reference:SL2.40ch02 gene_region:47268452-47288648 transcript_region:SL2.40ch02:47268452..47288648- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbC23877651g0001.1 protein ; (*GB) gi|255546073|ref|XP_002514096.1| (e_value=1e-20) hypothetical protein RCOM_1046470 [Ricinus communis];; (*TAIR) AT4G29790.1 (e_value=1e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211;; (*ITAG) Solyc07g040980.2.1 (e_value=3e-30) genomic_reference:SL2.40ch07 gene_region:48762547-48775386 transcript_region:SL2.40ch07:48762547..48775386+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00026613g0003.1 protein ; (*GB) gi|255537373|ref|XP_002509753.1| (e_value=5e-27) Elicitor-responsive protein, putative [Ricinus communis];; (*SWP) sp|Q0JBH9|ERG3_ORYSJ (e_value=1e-20) Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1;; (*TAIR) AT1G63220.1 (e_value=2e-19) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:23449017-23450244 FORWARD LENGTH=147;; (*ITAG) Solyc01g005030.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:47011-54276 transcript_region:SL2.40ch01:47011..54276+ go_terms:GO:0006468,GO:0016021 functional_description:"Serine/threonine-protein kinase 36 (AHRD V1 *-*- STK36_HUMAN); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0006468,GO:0016021 NbS00002139g0001.1 protein NbS00004141g0005.1 protein NbS00051880g0004.1 protein ; (*GB) gi|255562595|ref|XP_002522303.1| (e_value=2e-55) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G50620.1 (e_value=6e-53) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18784993-18786747 REVERSE LENGTH=340;; (*ITAG) Solyc02g090620.2.1 (e_value=4e-66) genomic_reference:SL2.40ch02 gene_region:46742319-46745553 transcript_region:SL2.40ch02:46742319..46745553- functional_description:"Unknown Protein (AHRD V1)"; NbS00026811g0003.1 protein NbS00004229g0102.1 protein NbS00001834g0003.1 protein NbS00045055g0001.1 protein NbS00027336g0003.1 protein NbS00013345g0003.1 protein NbC24624098g0001.1 protein NbC24283893g0001.1 protein ; (*GB) gi|255560374|ref|XP_002521202.1| (e_value=7e-31) translation initiation factor 2b, delta subunit, putative [Ricinus communis];; (*TAIR) AT5G38640.1 (e_value=1e-31) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:15468020-15470674 REVERSE LENGTH=642;; (*ITAG) Solyc02g089810.2.1 (e_value=8e-36) genomic_reference:SL2.40ch02 gene_region:46084128-46088822 transcript_region:SL2.40ch02:46084128..46088822- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B delta subunit (AHRD V1 **** B6U6N6_MAIZE); contains Interpro domain(s) IPR000649 Initiation factor 2B related "; GO:0005085 NbS00001999g0001.1 protein NbS00003915g0101.1 protein NbS00033394g0001.1 protein NbS00033394g0002.1 protein NbS00011599g0001.1 protein ; (*GB) gi|225430975|ref|XP_002272148.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100263320 [Vitis vinifera];; (*TAIR) AT5G16460.1 (e_value=3e-31) | Symbols: | Putative adipose-regulatory protein (Seipin) | chr5:5377085-5378533 REVERSE LENGTH=368;; (*ITAG) Solyc04g056380.2.1 (e_value=2e-60) genomic_reference:SL2.40ch04 gene_region:53308208-53312047 transcript_region:SL2.40ch04:53308208..53312047+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 **-- Q9FFD9_ARATH); contains Interpro domain(s) IPR009617 Adipose-regulatory protein, Seipin "; NbS00013016g0003.1 protein NbS00028397g0102.1 protein NbC23975443g0001.1 protein ; (*GB) gi|224075377|ref|XP_002304609.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIB2|PP373_ARATH (e_value=1e-14) Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1;; (*TAIR) AT5G09950.1 (e_value=9e-16) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:3102877-3105864 REVERSE LENGTH=995;; (*ITAG) Solyc06g066380.1.1 (e_value=1e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38065876-38067201 transcript_region:SL2.40ch06:38065876..38067201+ go_terms:GO:0004519,GO:0005030 functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HUZ9_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0005030 NbS00032412g0003.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00033230g0202.1 protein NbS00004538g0101.1 protein NbC23505093g0001.1 protein ; (*GB) gi|359386146|gb|AEV43362.1| (e_value=8e-28) poly C-binding protein [Citrus sinensis];; (*TAIR) AT5G15270.1 (e_value=8e-16) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc03g034200.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:10162350-10168111 transcript_region:SL2.40ch03:10162350..10168111- go_terms:GO:0003676 functional_description:"KH domain containing protein expressed (AHRD V1 **-- Q8LNT9_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00004370g0001.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=8e-22) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*TAIR) AT3G26040.1 (e_value=4e-18) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442; NbS00004370g0012.1 protein ; (*GB) gi|15230740|ref|NP_189647.1| (e_value=1e-23) HXXXD-type acyl-transferase-like protein [Arabidopsis thaliana];; (*SWP) sp|Q9FI40|BAHD1_ARATH (e_value=6e-21) BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1;; (*TAIR) AT3G30280.1 (e_value=3e-26) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:11914366-11915697 FORWARD LENGTH=443;; (*ITAG) Solyc01g008300.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2405018-2406951 transcript_region:SL2.40ch01:2405018..2406951- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IAS9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00004370g0013.1 protein NbS00004370g0006.1 protein NbS00011653g0002.1 protein NbC23164039g0001.1 protein ; (*GB) gi|224062213|ref|XP_002300796.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q945U1|RS15_ELAOL (e_value=2e-18) 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1;; (*TAIR) AT1G04270.2 (e_value=6e-19) | Symbols: RPS15 | cytosolic ribosomal protein S15 | chr1:1141852-1142960 REVERSE LENGTH=151;; (*ITAG) Solyc06g053820.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:33171797-33174639 transcript_region:SL2.40ch06:33171797..33174639+ go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S19 (AHRD V1 *-*- RS19_SHEAM); contains Interpro domain(s) IPR005713 Ribosomal protein S15, eukaryotic/archaeal "; GO:0003735,GO:0005515 NbS00015022g0003.1 protein NbC24291861g0001.1 protein ; (*GB) gi|225460189|ref|XP_002277079.1| (e_value=1e-65) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q8BMJ2|SYLC_MOUSE (e_value=3e-44) Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2;; (*TAIR) AT1G09620.1 (e_value=5e-64) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=7e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00012192g0001.1 protein NbC24288691g0001.1 protein ; (*GB) gi|3582436|dbj|BAA33065.1| (e_value=2e-40) beta-D-glucan exohydrolase [Nicotiana tabacum];; (*TAIR) AT5G20940.1 (e_value=5e-35) | Symbols: | Glycosyl hydrolase family protein | chr5:7104076-7106653 REVERSE LENGTH=626;; (*ITAG) Solyc04g015560.2.1 (e_value=2e-37) genomic_reference:SL2.40ch04 gene_region:5817557-5825924 transcript_region:SL2.40ch04:5817557..5825924+ go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbC24013865g0001.1 protein ; (*GB) gi|356542092|ref|XP_003539505.1| (e_value=6e-48) PREDICTED: uncharacterized protein LOC100800982 isoform 1 [Glycine max];; (*SWP) sp|Q54BM5|BBP_DICDI (e_value=1e-17) Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1;; (*TAIR) AT5G51300.3 (e_value=5e-45) | Symbols: | splicing factor-related | chr5:20849881-20852295 REVERSE LENGTH=804;; (*ITAG) Solyc03g093350.2.1 (e_value=6e-49) genomic_reference:SL2.40ch03 gene_region:48068163-48070598 transcript_region:SL2.40ch03:48068163..48070598- go_terms:GO:0003676,GO:0003723,GO:0008270,GO:0000166 functional_description:"RNA-binding protein 39 (AHRD V1 *--- RBM39_PONAB); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0003723,GO:0008270,GO:0000166 NbS00028691g0001.1 protein NbS00028691g0002.1 protein ; (*GB) gi|297739784|emb|CBI29966.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G11964.1 (e_value=1e-14) | Symbols: | RNA binding;RNA binding | chr3:3793957-3806626 REVERSE LENGTH=1896;; (*ITAG) Solyc03g051900.2.1 (e_value=2e-53) genomic_reference:SL2.40ch03 gene_region:19266146-19305006 transcript_region:SL2.40ch03:19266146..19305006- go_terms:GO:0008134 functional_description:"30S ribosomal protein S1 (AHRD V1 *--- RS1_CHLPN); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0008134 NbS00051968g0002.1 protein ; (*ITAG) Solyc08g014370.1.1 (e_value=2e-14) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00005741g0004.1 protein NbS00033817g0001.1 protein NbS00044838g0001.1 protein NbS00002956g0003.1 protein NbC24845579g0001.1 protein ; (*GB) gi|255581774|ref|XP_002531688.1| (e_value=4e-80) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G05120.2 (e_value=6e-72) | Symbols: | Nucleoporin, Nup133/Nup155-like | chr2:1842069-1846858 REVERSE LENGTH=1220;; (*ITAG) Solyc07g047860.2.1 (e_value=2e-121) genomic_reference:SL2.40ch07 gene_region:56407270-56414654 transcript_region:SL2.40ch07:56407270..56414654- go_terms:GO:0005515 functional_description:"Nup133 nucleoporin family protein expressed (AHRD V1 **-- Q10PQ6_ORYSJ); contains Interpro domain(s) IPR014908 Nup133, N-terminal "; GO:0005515 NbC24970347g0001.1 protein ; (*GB) gi|224139668|ref|XP_002323220.1| (e_value=1e-93) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6J163|5NG4_PINTA (e_value=1e-25) Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1;; (*TAIR) AT5G07050.1 (e_value=8e-77) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:2191533-2193416 REVERSE LENGTH=402;; (*ITAG) Solyc10g080990.1.1 (e_value=1e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61500614-61502344 transcript_region:SL2.40ch10:61500614..61502344+ go_terms:GO:0016020 functional_description:"Nodulin MtN21 family protein (Fragment) (AHRD V1 *-*- C0KY62_ARAKO); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00008821g0001.1 protein NbC23683785g0001.1 protein ; (*ITAG) Solyc04g082870.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000302g0001.1 protein NbS00000302g0002.1 protein NbS00007119g0002.1 protein NbS00028402g0003.1 protein ; (*ITAG) Solyc11g028250.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17313728-17316270 transcript_region:SL2.40ch11:17313728..17316270- functional_description:"Unknown Protein (AHRD V1)"; NbS00028402g0004.1 protein NbS00004626g0003.1 protein NbS00020753g0001.1 protein ; (*GB) gi|133873117|gb|ABO40491.1| (e_value=1e-79) hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase [Coffea arabica];; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=9e-80) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=2e-69) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=3e-78) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00029328g0001.1 protein ; (*GB) gi|356575619|ref|XP_003555936.1| (e_value=4e-128) PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max];; (*SWP) sp|Q8N0Z6|TTC5_HUMAN (e_value=3e-49) Tetratricopeptide repeat protein 5 OS=Homo sapiens GN=TTC5 PE=1 SV=2;; (*ITAG) Solyc05g008420.2.1 (e_value=3e-132) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00030826g0002.1 protein NbS00011001g0001.1 protein NbS00001900g0002.1 protein NbS00059067g0001.1 protein NbS00022507g0001.1 protein NbS00042642g0003.1 protein NbS00042642g0005.1 protein NbS00004409g0003.1 protein NbC23560316g0001.1 protein ; (*GB) gi|225458077|ref|XP_002280559.1| (e_value=5e-31) PREDICTED: galactose oxidase-like [Vitis vinifera];; (*TAIR) AT1G19900.1 (e_value=2e-32) | Symbols: | glyoxal oxidase-related protein | chr1:6907038-6908684 REVERSE LENGTH=548;; (*ITAG) Solyc04g081130.1.1 (e_value=5e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62759275-62760918 transcript_region:SL2.40ch04:62759275..62760918+ functional_description:"Glyoxal oxidase (AHRD V1 ***- B6TJK4_MAIZE); contains Interpro domain(s) IPR009880 Glyoxal oxidase, N-terminal "; NbS00016868g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-42) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbC25812549g0001.1 protein ; (*GB) gi|147800081|emb|CAN77652.1| (e_value=1e-66) hypothetical protein VITISV_032323 [Vitis vinifera];; (*SWP) sp|Q9C641|EFGM_ARATH (e_value=6e-63) Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1;; (*TAIR) AT1G45332.1 (e_value=5e-64) | Symbols: | Translation elongation factor EFG/EF2 protein | chr1:17172507-17176683 REVERSE LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=3e-71) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbC23755853g0001.1 protein ; (*GB) gi|20152209|dbj|BAB89366.1| (e_value=2e-34) phosphoenolpyruvate carboxylase [Nicotiana sylvestris];; (*SWP) sp|Q5GM68|CAPP2_ARATH (e_value=1e-34) Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2;; (*TAIR) AT2G42600.1 (e_value=9e-36) | Symbols: ATPPC2, PPC2 | phosphoenolpyruvate carboxylase 2 | chr2:17734541-17738679 REVERSE LENGTH=963;; (*ITAG) Solyc07g055060.2.1 (e_value=1e-35) genomic_reference:SL2.40ch07 gene_region:60510756-60518074 transcript_region:SL2.40ch07:60510756..60518074- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- O23946_GOSHI); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00006769g0002.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=4e-21) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00024651g0001.1 protein NbS00004816g0001.1 protein ; (*GB) gi|147776948|emb|CAN63422.1| (e_value=9e-56) hypothetical protein VITISV_023524 [Vitis vinifera];; (*SWP) sp|Q9M353|CHX20_ARATH (e_value=2e-46) Cation/H(+) antiporter 20 OS=Arabidopsis thaliana GN=CHX20 PE=2 SV=1;; (*TAIR) AT3G53720.1 (e_value=1e-47) | Symbols: ATCHX20, CHX20 | cation/H+ exchanger 20 | chr3:19905826-19910027 REVERSE LENGTH=842;; (*ITAG) Solyc09g010530.2.1 (e_value=4e-84) genomic_reference:SL2.40ch09 gene_region:3902289-3907675 transcript_region:SL2.40ch09:3902289..3907675- go_terms:GO:0015385 functional_description:"Cation/H+ antiporter (AHRD V1 **** D1JSI8_9BACE); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbC24400266g0001.1 protein ; (*GB) gi|225434028|ref|XP_002273850.1| (e_value=9e-52) PREDICTED: uncharacterized GPI-anchored protein At1g61900-like [Vitis vinifera];; (*SWP) sp|Q8GUI4|UGPI6_ARATH (e_value=9e-22) Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1;; (*TAIR) AT2G30700.1 (e_value=2e-47) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13082033-13084384 REVERSE LENGTH=480;; (*ITAG) Solyc11g045330.1.1 (e_value=7e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:37536502-37544737 transcript_region:SL2.40ch11:37536502..37544737+ functional_description:"Uncharacterized GPI-anchored protein At1g61900 (AHRD V1 ***- UGPI6_ARATH)"; NbS00013507g0003.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-21) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc04g051520.1.1 (e_value=4e-55) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49918628-49922700 transcript_region:SL2.40ch04:49918628..49922700+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00042865g0001.1 protein NbS00041204g0001.1 protein NbC23151721g0001.1 protein ; (*GB) gi|62321635|dbj|BAD95241.1| (e_value=2e-17) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT4G19040.3 (e_value=5e-20) | Symbols: EDR2 | ENHANCED DISEASE RESISTANCE 2 | chr4:10431799-10437171 REVERSE LENGTH=720;; (*ITAG) Solyc12g096050.1.1 (e_value=9e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63462666-63475970 transcript_region:SL2.40ch12:63462666..63475970- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00017878g0001.1 protein ; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=3e-44) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FIX3|PP407_ARATH (e_value=6e-28) Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1;; (*TAIR) AT5G39710.1 (e_value=4e-29) | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:15895729-15897972 FORWARD LENGTH=747;; (*ITAG) Solyc03g120460.2.1 (e_value=9e-36) genomic_reference:SL2.40ch03 gene_region:62898588-62902523 transcript_region:SL2.40ch03:62898588..62902523- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017878g0002.1 protein ; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=4e-30) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*TAIR) AT1G77340.1 (e_value=3e-14) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29068620-29069828 REVERSE LENGTH=402;; (*ITAG) Solyc03g120460.2.1 (e_value=6e-34) genomic_reference:SL2.40ch03 gene_region:62898588-62902523 transcript_region:SL2.40ch03:62898588..62902523- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00017878g0003.1 protein ; (*GB) gi|255573471|ref|XP_002527661.1| (e_value=5e-35) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9T0D6|PP306_ARATH (e_value=9e-19) Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1;; (*TAIR) AT4G11690.1 (e_value=7e-20) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:7056254-7057954 FORWARD LENGTH=566;; (*ITAG) Solyc11g073270.1.1 (e_value=4e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022916g0001.1 protein ; (*GB) gi|255555651|ref|XP_002518861.1| (e_value=2e-15) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q84TH9|NLP7_ARATH (e_value=6e-14) Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2;; (*TAIR) AT4G24020.1 (e_value=4e-15) | Symbols: NLP7 | NIN like protein 7 | chr4:12479904-12483822 FORWARD LENGTH=959;; (*ITAG) Solyc08g082750.2.1 (e_value=2e-47) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00007071g0001.1 protein ; (*ITAG) Solyc07g054650.1.1 (e_value=6e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60236558-60237904 transcript_region:SL2.40ch07:60236558..60237904+ go_terms:GO:0005515,GO:0003677 functional_description:"Aspartyl protease family protein (AHRD V1 **-- Q9SZV6_ARATH); contains Interpro domain(s) IPR009007 Peptidase aspartic, catalytic "; GO:0005515,GO:0003677 NbS00007071g0102.1 protein NbC24741618g0001.1 protein ; (*GB) gi|224109884|ref|XP_002315343.1| (e_value=3e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g071670.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:41270117-41272196 transcript_region:SL2.40ch03:41270117..41272196+ functional_description:"Protein binding protein (AHRD V1 ***- D7LXJ1_ARALY)"; NbS00049158g0001.1 protein ; (*GB) gi|45649132|gb|AAS75127.1| (e_value=3e-60) GSDL-motif lipase [Agave americana];; (*SWP) sp|Q9SVU5|GDL67_ARATH (e_value=4e-55) GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1;; (*TAIR) AT4G28780.1 (e_value=3e-56) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:14215603-14217159 FORWARD LENGTH=367;; (*ITAG) Solyc04g050730.2.1 (e_value=4e-64) genomic_reference:SL2.40ch04 gene_region:47205422-47209535 transcript_region:SL2.40ch04:47205422..47209535- go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00035475g0001.1 protein ; (*GB) gi|15485672|emb|CAC67797.1| (e_value=1e-135) TCTR2 protein [Solanum lycopersicum];; (*SWP) sp|Q05609|CTR1_ARATH (e_value=3e-29) Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1;; (*TAIR) AT1G08720.1 (e_value=6e-75) | Symbols: EDR1, ATEDR1 | Protein kinase superfamily protein | chr1:2774089-2779077 FORWARD LENGTH=933;; (*ITAG) Solyc01g097980.2.1 (e_value=3e-138) genomic_reference:SL2.40ch01 gene_region:80387053-80397552 transcript_region:SL2.40ch01:80387053..80397552+ go_terms:GO:0004709 functional_description:"Kinase family protein (AHRD V1 *-** D7M4D4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004709 NbS00000295g0001.1 protein ; (*GB) gi|225453881|ref|XP_002273056.1| (e_value=7e-89) PREDICTED: vacuolar iron transporter 1 [Vitis vinifera];; (*ITAG) Solyc01g091850.2.1 (e_value=2e-109) genomic_reference:SL2.40ch01 gene_region:77156850-77158091 transcript_region:SL2.40ch01:77156850..77158091+ functional_description:"Integral membrane protein (AHRD V1 ***- Q22DU5_TETTH); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbC23274774g0001.1 protein ; (*GB) gi|109289916|gb|ABG29322.1| (e_value=9e-31) DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum bulbocastanum];; (*SWP) sp|Q9LV32|RPD2B_ARATH (e_value=9e-21) DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b PE=2 SV=1;; (*TAIR) AT3G18090.1 (e_value=6e-22) | Symbols: NRPD2B | nuclear RNA polymerase D2B | chr3:6195323-6200204 FORWARD LENGTH=1055;; (*ITAG) Solyc03g110880.2.1 (e_value=3e-34) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00015394g0004.1 protein ; (*GB) gi|225432035|ref|XP_002273694.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Vitis vinifera];; (*SWP) sp|Q9M302|PP270_ARATH (e_value=8e-176) Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1;; (*TAIR) AT3G48810.1 (e_value=6e-177) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18097048-18099027 FORWARD LENGTH=659;; (*ITAG) Solyc08g076680.1.1 (e_value=8e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:57776442-57778604 transcript_region:SL2.40ch08:57776442..57778604- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002212g0001.1 protein NbS00055527g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00007798g0001.1 protein NbS00007798g0002.1 protein NbS00028596g0001.1 protein NbS00000459g0001.1 protein NbS00000459g0002.1 protein NbS00013028g0001.1 protein NbS00006071g0001.1 protein NbS00007194g0003.1 protein NbS00018055g0001.1 protein NbS00004142g0001.1 protein ; (*GB) gi|225441183|ref|XP_002266033.1| (e_value=1e-52) PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera];; (*TAIR) AT5G03450.1 (e_value=1e-45) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630;; (*ITAG) Solyc09g008330.2.1 (e_value=5e-79) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00017353g0101.1 protein NbS00003655g0002.1 protein NbS00036812g0001.1 protein NbS00038540g0001.1 protein ; (*GB) gi|224079135|ref|XP_002305762.1| (e_value=5e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5RBD4|DHX35_PONAB (e_value=9e-40) Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1;; (*TAIR) AT4G18465.1 (e_value=7e-66) | Symbols: | RNA helicase family protein | chr4:10197056-10201611 FORWARD LENGTH=695;; (*ITAG) Solyc09g097820.2.1 (e_value=8e-75) genomic_reference:SL2.40ch09 gene_region:67082028-67094293 transcript_region:SL2.40ch09:67082028..67094293- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** C5JMZ5_AJEDS); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00007373g0001.1 protein NbS00007373g0002.1 protein NbC25490671g0001.1 protein NbS00012093g0003.1 protein NbS00013948g0004.1 protein NbS00024184g0001.1 protein NbS00024184g0002.1 protein ; (*GB) gi|255579988|ref|XP_002530828.1| (e_value=1e-18) conserved hypothetical protein [Ricinus communis]; NbS00004869g0002.1 protein NbS00043147g0001.1 protein NbS00025337g0002.1 protein ; (*GB) gi|224079209|ref|XP_002305794.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32480.1 (e_value=1e-38) | Symbols: | Protein of unknown function (DUF506) | chr4:15676488-15677776 FORWARD LENGTH=287;; (*ITAG) Solyc02g078160.2.1 (e_value=7e-59) genomic_reference:SL2.40ch02 gene_region:37512382-37514246 transcript_region:SL2.40ch02:37512382..37514246+ functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 ***- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00027796g0002.1 protein ; (*GB) gi|225435776|ref|XP_002285737.1| (e_value=3e-34) PREDICTED: lysyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q8DMA9|SYK_THEEB (e_value=4e-21) Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1;; (*TAIR) AT3G13490.1 (e_value=9e-35) | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class II | chr3:4395984-4399302 REVERSE LENGTH=602;; (*ITAG) Solyc01g005540.2.1 (e_value=7e-43) genomic_reference:SL2.40ch01 gene_region:359831-370398 transcript_region:SL2.40ch01:359831..370398- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SBP3_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00036279g0002.1 protein NbS00056706g0001.1 protein ; (*GB) gi|359493969|ref|XP_002283802.2| (e_value=8e-41) PREDICTED: chaperone protein ClpD, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P42762|CLPD_ARATH (e_value=7e-40) Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana GN=CLPD PE=1 SV=1;; (*TAIR) AT5G51070.1 (e_value=5e-41) | Symbols: ERD1, CLPD, SAG15 | Clp ATPase | chr5:20764479-20768481 FORWARD LENGTH=945;; (*ITAG) Solyc03g117950.2.1 (e_value=5e-56) genomic_reference:SL2.40ch03 gene_region:60977137-60983778 transcript_region:SL2.40ch03:60977137..60983778- go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0016021 functional_description:"Chaperone protein ClpB 1 (AHRD V1 **-- D0CK17_9SYNE); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0016021 NbS00013783g0002.1 protein NbS00042998g0002.1 protein NbS00004662g0101.1 protein NbS00046668g0002.1 protein NbS00020990g0004.1 protein NbS00011003g0001.1 protein NbS00006600g0003.1 protein ; (*GB) gi|224060283|ref|XP_002300122.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G14090.1 (e_value=2e-17) | Symbols: | unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:4547230-4549214 FORWARD LENGTH=358;; (*ITAG) Solyc05g015880.2.1 (e_value=7e-29) genomic_reference:SL2.40ch05 gene_region:12616663-12619235 transcript_region:SL2.40ch05:12616663..12619235- functional_description:"Genomic DNA chromosome 5 P1 clone MUA22 (AHRD V1 ***- Q9FMU1_ARATH)"; NbC23814183g0001.1 protein ; (*GB) gi|255555541|ref|XP_002518807.1| (e_value=5e-20) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G02170.2 (e_value=2e-17) | Symbols: | Remorin family protein | chr2:556595-558610 REVERSE LENGTH=486;; (*ITAG) Solyc01g008180.2.1 (e_value=4e-31) genomic_reference:SL2.40ch01 gene_region:2327830-2334359 transcript_region:SL2.40ch01:2327830..2334359- go_terms:GO:0003677 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *--* Q42051_ARATH); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00008372g0001.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=2e-13) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc09g059390.2.1 (e_value=7e-36) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00008372g0002.1 protein NbS00043494g0001.1 protein ; (*GB) gi|224142788|ref|XP_002324732.1| (e_value=5e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32960.1 (e_value=7e-28) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:15908785-15910141 REVERSE LENGTH=264;; (*ITAG) Solyc12g095920.1.1 (e_value=8e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63360272-63364478 transcript_region:SL2.40ch12:63360272..63364478- functional_description:"BRCA1-A complex subunit MERIT40 (AHRD V1 ***- MRI40_XENTR)"; NbS00035716g0001.1 protein NbS00005136g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-59) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g059350.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:49937177-49940525 transcript_region:SL2.40ch09:49937177..49940525- go_terms:GO:0008270 functional_description:"Transposase (Fragment) (AHRD V1 *--- A8BTK4_VITVI); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00053032g0001.1 protein NbS00053319g0001.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-26) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00028642g0001.1 protein ; (*GB) gi|225438392|ref|XP_002275313.1| (e_value=3e-39) PREDICTED: uncharacterized protein LOC100256147 [Vitis vinifera];; (*TAIR) AT4G33480.1 (e_value=2e-39) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). | chr4:16105804-16108497 REVERSE LENGTH=336;; (*ITAG) Solyc04g015480.2.1 (e_value=1e-46) genomic_reference:SL2.40ch04 gene_region:5684850-5691675 transcript_region:SL2.40ch04:5684850..5691675+ functional_description:"cDNA clone 006-204-H08 full insert sequence (AHRD V1 *-*- B7E442_ORYSJ)"; NbS00028642g0002.1 protein ; (*ITAG) Solyc11g010830.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:3853086-3853859 transcript_region:SL2.40ch11:3853086..3853859- functional_description:"Unknown Protein (AHRD V1)"; NbS00027313g0001.1 protein NbS00027313g0002.1 protein NbS00005100g0004.1 protein NbS00043836g0001.1 protein NbS00002009g0104.1 protein NbS00033997g0002.1 protein NbS00000312g0004.1 protein NbS00032955g0001.1 protein ; (*TAIR) AT5G20490.1 (e_value=1e-13) | Symbols: XIK, ATXIK, XI-17 | Myosin family protein with Dil domain | chr5:6927064-6936825 REVERSE LENGTH=1545;; (*ITAG) Solyc06g083960.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00032955g0002.1 protein ; (*GB) gi|297738205|emb|CBI27406.3| (e_value=2e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LMY5|PPR41_ARATH (e_value=1e-46) Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3;; (*TAIR) AT1G13630.2 (e_value=1e-47) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4670178-4672826 REVERSE LENGTH=798;; (*ITAG) Solyc05g010780.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4977121-4979067 transcript_region:SL2.40ch05:4977121..4979067- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00033208g0101.1 protein NbS00001953g0102.1 protein NbS00017858g0001.1 protein ; (*GB) gi|359491637|ref|XP_002280859.2| (e_value=9e-123) PREDICTED: histone deacetylase 5-like [Vitis vinifera];; (*SWP) sp|Q8LRK8|HDA18_ARATH (e_value=6e-117) Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1;; (*TAIR) AT5G61070.1 (e_value=5e-118) | Symbols: HDA18, ATHDA18 | histone deacetylase of the RPD3/HDA1 superfamily 18 | chr5:24571297-24574372 REVERSE LENGTH=682;; (*ITAG) Solyc03g115150.2.1 (e_value=3e-122) genomic_reference:SL2.40ch03 gene_region:58987933-59002207 transcript_region:SL2.40ch03:58987933..59002207- go_terms:GO:0031078 functional_description:"Histone deacetylase (AHRD V1 **** B9H356_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0031078 NbS00017847g0002.1 protein NbS00010992g0003.1 protein NbS00053005g0001.1 protein ; (*GB) gi|357505893|ref|XP_003623235.1| (e_value=7e-41) Receptor kinase-like protein [Medicago truncatula];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=6e-25) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=5e-26) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc10g085120.1.1 (e_value=4e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63741956-63745075 transcript_region:SL2.40ch10:63741956..63745075+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00004124g0006.1 protein ; (*GB) gi|359489804|ref|XP_002275378.2| (e_value=4e-18) PREDICTED: uncharacterized protein LOC100248277 [Vitis vinifera];; (*ITAG) Solyc01g095020.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:78145830-78159352 transcript_region:SL2.40ch01:78145830..78159352+ functional_description:"cDNA clone J023132J12 full insert sequence (AHRD V1 ***- B7EL27_ORYSJ)"; NbS00014081g0001.1 protein NbS00044693g0002.1 protein NbS00022652g0001.1 protein NbS00022652g0002.1 protein NbS00009719g0105.1 protein NbS00009719g0106.1 protein NbS00021385g0101.1 protein NbS00021385g0102.1 protein NbS00024169g0001.1 protein NbS00038919g0001.1 protein ; (*GB) gi|297798600|ref|XP_002867184.1| (e_value=1e-51) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G33360.1 (e_value=4e-54) | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16067989-16069374 REVERSE LENGTH=344;; (*ITAG) Solyc12g088880.1.1 (e_value=6e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62523783-62527414 transcript_region:SL2.40ch12:62523783..62527414- go_terms:GO:0044237,GO:0008152 functional_description:"Epimerase/dehydratase (AHRD V1 ***- C7JBC7_ACEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbC25752231g0001.1 protein ; (*GB) gi|298676333|dbj|BAJ09698.1| (e_value=5e-21) ARGONAUTE 1 [Nicotiana tabacum];; (*ITAG) Solyc06g072300.2.1 (e_value=3e-20) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00053069g0001.1 protein NbS00009897g0001.1 protein ; (*GB) gi|298205054|emb|CBI38350.3| (e_value=1e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=2e-38) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=2e-39) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc11g008580.1.1 (e_value=1e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2764823-2775320 transcript_region:SL2.40ch11:2764823..2775320- go_terms:GO:0008270,GO:0005622 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270,GO:0005622 NbC24111062g0001.1 protein ; (*GB) gi|356540870|ref|XP_003538907.1| (e_value=2e-51) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max];; (*SWP) sp|Q10490|SYLC_SCHPO (e_value=5e-34) Putative leucine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26F1.13c PE=1 SV=1;; (*TAIR) AT1G09620.1 (e_value=5e-47) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=7e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00020700g0001.1 protein ; (*GB) gi|163914235|dbj|BAF95887.1| (e_value=7e-35) subtilase [Lotus japonicus];; (*SWP) sp|O65351|SUBL_ARATH (e_value=6e-19) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT2G04160.1 (e_value=2e-29) | Symbols: AIR3 | Subtilisin-like serine endopeptidase family protein | chr2:1401450-1407694 REVERSE LENGTH=772;; (*ITAG) Solyc04g081810.2.1 (e_value=6e-26) genomic_reference:SL2.40ch04 gene_region:63295981-63300139 transcript_region:SL2.40ch04:63295981..63300139- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00002734g0001.1 protein ; (*GB) gi|255554533|ref|XP_002518305.1| (e_value=3e-90) Glutathione-regulated potassium-efflux system protein kefB, putative [Ricinus communis];; (*SWP) sp|Q9M0Z3|KEA3_ARATH (e_value=3e-86) K(+) efflux antiporter 3, chloroplastic OS=Arabidopsis thaliana GN=KEA3 PE=1 SV=2;; (*TAIR) AT4G04850.2 (e_value=3e-87) | Symbols: KEA3 | K+ efflux antiporter 3 | chr4:2453174-2457490 FORWARD LENGTH=776;; (*ITAG) Solyc11g044250.1.1 (e_value=1e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35185326-35188017 transcript_region:SL2.40ch11:35185326..35188017- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 ***- B3CM92_WOLPP); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00054791g0002.1 protein NbS00004041g0004.1 protein NbS00004041g0007.1 protein NbS00040768g0002.1 protein NbS00014406g0002.1 protein ; (*GB) gi|224125918|ref|XP_002329749.1| (e_value=6e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17740.1 (e_value=1e-33) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr3:6068003-6072814 REVERSE LENGTH=1149;; (*ITAG) Solyc03g098160.2.1 (e_value=5e-63) genomic_reference:SL2.40ch03 gene_region:53935244-53947764 transcript_region:SL2.40ch03:53935244..53947764+ go_terms:GO:0005975,GO:0005622 functional_description:"Chromosome 14 open reading frame 102 (AHRD V1 *--- Q4G0A7_HUMAN); contains Interpro domain(s) IPR013633 Protein of unknown function DUF1740 "; GO:0005975,GO:0005622 NbS00031159g0001.1 protein ; (*GB) gi|300681038|sp|B8BDV1.1|LONP2_ORYSI (e_value=4e-31) RecName: Full=Lon protease homolog 2, peroxisomal;; (*SWP) sp|B8BDV1|LONP2_ORYSI (e_value=1e-32) Lon protease homolog 2, peroxisomal OS=Oryza sativa subsp. indica GN=LON1 PE=2 SV=1;; (*TAIR) AT5G47040.1 (e_value=6e-31) | Symbols: LON2 | lon protease 2 | chr5:19093356-19098678 REVERSE LENGTH=888;; (*ITAG) Solyc08g077440.2.1 (e_value=7e-36) genomic_reference:SL2.40ch08 gene_region:58492655-58502566 transcript_region:SL2.40ch08:58492655..58502566- go_terms:GO:0004176,GO:0070182 functional_description:"ATP-dependent protease La (AHRD V1 **** A7HC55_ANADF); contains Interpro domain(s) IPR004815 Peptidase S16, ATP-dependent protease La "; GO:0004176,GO:0070182 NbS00046178g0001.1 protein NbS00003768g0001.1 protein NbS00014925g0002.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=3e-13) hypothetical protein [Cucumis melo subsp. melo]; NbS00005139g0001.1 protein ; (*GB) gi|224138918|ref|XP_002322934.1| (e_value=5e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g011690.2.1 (e_value=1e-36) genomic_reference:SL2.40ch09 gene_region:4952573-4954426 transcript_region:SL2.40ch09:4952573..4954426+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007992g0101.1 protein NbS00050067g0001.1 protein NbS00060630g0001.1 protein NbS00023981g0001.1 protein ; (*ITAG) Solyc12g044780.1.1 (e_value=1e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45529380-45530537 transcript_region:SL2.40ch12:45529380..45530537+ functional_description:"F-box family protein (AHRD V1 *-*- D7LXD8_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00020290g0005.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=9e-38) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=3e-33) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=2e-34) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=7e-46) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00027421g0001.1 protein NbS00007759g0103.1 protein NbS00050622g0003.1 protein NbC23294013g0001.1 protein ; (*GB) gi|3914360|sp|O04883.1|PLDA1_PIMBR (e_value=7e-26) RecName: Full=Phospholipase D alpha 1; Short=PLD alpha 1; AltName: Full=Choline phosphatase 1; AltName: Full=Phosphatidylcholine-hydrolyzing phospholipase D 1;; (*SWP) sp|O04883|PLDA1_PIMBR (e_value=2e-27) Phospholipase D alpha 1 OS=Pimpinella brachycarpa GN=PLD1 PE=2 SV=1;; (*TAIR) AT3G15730.1 (e_value=8e-25) | Symbols: PLDALPHA1, PLD | phospholipase D alpha 1 | chr3:5330835-5333474 FORWARD LENGTH=810;; (*ITAG) Solyc03g116620.2.1 (e_value=2e-29) genomic_reference:SL2.40ch03 gene_region:60013144-60016621 transcript_region:SL2.40ch03:60013144..60016621+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** D2E4A5_9ROSI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00011978g0001.1 protein ; (*GB) gi|359483492|ref|XP_002273615.2| (e_value=1e-81) PREDICTED: glycogen phosphorylase 1-like [Vitis vinifera];; (*SWP) sp|Q00766|PHS1_DICDI (e_value=2e-32) Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3;; (*TAIR) AT3G29320.1 (e_value=4e-31) | Symbols: | Glycosyl transferase, family 35 | chr3:11252871-11257587 FORWARD LENGTH=962;; (*ITAG) Solyc02g077680.2.1 (e_value=8e-60) genomic_reference:SL2.40ch02 gene_region:37144954-37157686 transcript_region:SL2.40ch02:37144954..37157686+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9H2Q8_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00000624g0002.1 protein ; (*GB) gi|350539497|ref|NP_001234664.1| (e_value=1e-18) mitogen-activated protein kinase 12 [Solanum lycopersicum];; (*ITAG) Solyc07g056350.2.1 (e_value=2e-21) genomic_reference:SL2.40ch07 gene_region:61549395-61555184 transcript_region:SL2.40ch07:61549395..61555184+ go_terms:GO:0008339 functional_description:"Mitogen activated protein kinase 20-1 (AHRD V1 **** B3GCL1_ORYSI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008339 NbS00021061g0101.1 protein NbS00004452g0003.1 protein NbS00028482g0002.1 protein ; (*GB) gi|160690484|gb|ABX46072.1| (e_value=3e-30) aspartyl transcarbamylase [Citrus medica];; (*TAIR) AT4G31180.2 (e_value=1e-21) | Symbols: | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558;; (*ITAG) Solyc05g056250.2.1 (e_value=3e-43) genomic_reference:SL2.40ch05 gene_region:64748883-64755406 transcript_region:SL2.40ch05:64748883..64755406- go_terms:GO:0004815,GO:0042802 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** SYN_PYRHO); contains Interpro domain(s) IPR004523 Aspartyl-tRNA synthetase, class IIb, archea/euk type "; GO:0004815,GO:0042802 NbS00017448g0002.1 protein NbS00017448g0003.1 protein NbS00035674g0003.1 protein ; (*GB) gi|34329680|gb|AAQ63971.1| (e_value=5e-23) unknown [Nicotiana benthamiana];; (*TAIR) AT3G04710.3 (e_value=4e-17) | Symbols: TPR10 | ankyrin repeat family protein | chr3:1276948-1280942 FORWARD LENGTH=680;; (*ITAG) Solyc01g097190.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:79885940-79899140 transcript_region:SL2.40ch01:79885940..79899140+ go_terms:GO:0008381 functional_description:"Ankyrin repeat protein-like (AHRD V1 ***- Q6K268_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00010670g0002.1 protein ; (*GB) gi|147815739|emb|CAN74873.1| (e_value=3e-158) hypothetical protein VITISV_038920 [Vitis vinifera];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=4e-16) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT1G67230.1 (e_value=2e-101) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc03g045050.2.1 (e_value=9e-115) genomic_reference:SL2.40ch03 gene_region:15380538-15390086 transcript_region:SL2.40ch03:15380538..15390086+ functional_description:"Nuclear matrix constituent protein 1 (AHRD V1 ***- D2YZU5_APIGR)"; NbS00010670g0003.1 protein ; (*GB) gi|297737881|emb|CBI27082.3| (e_value=1e-103) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FLH0|NMCP_ARATH (e_value=4e-30) Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1;; (*TAIR) AT1G13220.1 (e_value=5e-89) | Symbols: LINC2 | nuclear matrix constituent protein-related | chr1:4515660-4517415 FORWARD LENGTH=391;; (*ITAG) Solyc02g089800.2.1 (e_value=1e-65) genomic_reference:SL2.40ch02 gene_region:46075529-46082342 transcript_region:SL2.40ch02:46075529..46082342- functional_description:"Nuclear matrix constituent protein 1-like (AHRD V1 ***- A6BME3_PETCR)"; NbC23648761g0001.1 protein ; (*ITAG) Solyc06g082380.2.1 (e_value=2e-35) genomic_reference:SL2.40ch06 gene_region:44505351-44507339 transcript_region:SL2.40ch06:44505351..44507339- functional_description:"Unknown Protein (AHRD V1)"; NbS00016341g0003.1 protein NbC25867533g0001.1 protein ; (*GB) gi|224137098|ref|XP_002327021.1| (e_value=3e-27) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g061960.1.1 (e_value=2e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:54554571-54559270 transcript_region:SL2.40ch10:54554571..54559270+ go_terms:GO:0042302 functional_description:"MORN repeat-containing protein (AHRD V1 *--- A4WSX3_RHOS5); contains Interpro domain(s) IPR003409 MORN motif "; GO:0042302 NbS00016559g0004.1 protein NbS00006021g0002.1 protein NbS00047385g0001.1 protein NbS00012899g0002.1 protein NbS00034220g0001.1 protein NbS00012240g0004.1 protein NbS00003359g0301.1 protein NbS00003079g0001.1 protein NbS00012994g0202.1 protein NbS00044102g0001.1 protein NbS00048804g0003.1 protein NbS00022738g0001.1 protein NbS00013102g0001.1 protein NbS00013102g0104.1 protein NbS00049700g0001.1 protein NbC24505958g0001.1 protein ; (*GB) gi|356523149|ref|XP_003530204.1| (e_value=1e-58) PREDICTED: kinesin-like protein KIF22-like [Glycine max];; (*SWP) sp|Q6P3R1|KIF22_XENTR (e_value=1e-26) Kinesin-like protein KIF22 OS=Xenopus tropicalis GN=kif22 PE=2 SV=1;; (*TAIR) AT5G02370.1 (e_value=9e-50) | Symbols: | ATP binding microtubule motor family protein | chr5:503444-506388 FORWARD LENGTH=628;; (*ITAG) Solyc09g010810.2.1 (e_value=2e-71) genomic_reference:SL2.40ch09 gene_region:4096964-4103593 transcript_region:SL2.40ch09:4096964..4103593- go_terms:GO:0003677,GO:0003777 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L7B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0003677,GO:0003777 NbC25502591g0001.1 protein ; (*GB) gi|224077678|ref|XP_002305358.1| (e_value=2e-92) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9S7I6|RPK2_ARATH (e_value=6e-75) LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1;; (*TAIR) AT3G02130.1 (e_value=4e-76) | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein kinase 2 | chr3:380726-384181 FORWARD LENGTH=1151;; (*ITAG) Solyc03g059490.1.1 (e_value=2e-85) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:27445978-27449355 transcript_region:SL2.40ch03:27445978..27449355+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00003673g0001.1 protein NbS00000296g0104.1 protein NbS00007439g0005.1 protein NbS00007439g0007.1 protein NbS00017602g0001.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=3e-19) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006090.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00035886g0001.1 protein ; (*GB) gi|359487571|ref|XP_002276987.2| (e_value=1e-13) PREDICTED: glucose-6-phosphate 1-dehydrogenase 4, chloroplastic-like [Vitis vinifera];; (*ITAG) Solyc01g100960.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:82597821-82604294 transcript_region:SL2.40ch01:82597821..82604294- go_terms:GO:0008152,GO:0055114 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 ***- B9RFN8_RICCO); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0008152,GO:0055114 NbS00021823g0002.1 protein NbS00029589g0002.1 protein NbS00031876g0003.1 protein NbS00004602g0001.1 protein NbS00010289g0001.1 protein NbS00041233g0001.1 protein NbS00000455g0104.1 protein NbC24222681g0001.1 protein ; (*ITAG) Solyc11g008740.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2912620-2925432 transcript_region:SL2.40ch11:2912620..2925432- go_terms:GO:0000228 functional_description:"Double-strand-break repair protein rad21 (AHRD V1 *-*- D0NDK6_PHYIN); contains Interpro domain(s) IPR006910 Rad21/Rec8 like protein, N-terminal "; GO:0000228 NbS00001403g0003.1 protein NbC24094354g0001.1 protein ; (*GB) gi|225441355|ref|XP_002276914.1| (e_value=9e-55) PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein-like [Vitis vinifera];; (*SWP) sp|O22212|PRP4_ARATH (e_value=1e-46) U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1;; (*TAIR) AT2G41500.1 (e_value=1e-47) | Symbols: LIS, EMB2776 | WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related | chr2:17304319-17306855 REVERSE LENGTH=554;; (*ITAG) Solyc04g016510.2.1 (e_value=2e-62) genomic_reference:SL2.40ch04 gene_region:7335360-7338722 transcript_region:SL2.40ch04:7335360..7338722+ go_terms:GO:0045505 functional_description:"Guanine nucleotide-binding protein subunit beta-4 (AHRD V1 *--* GBB4_HUMAN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0045505 NbS00031785g0001.1 protein NbS00010381g0002.1 protein ; (*GB) gi|356547867|ref|XP_003542326.1| (e_value=1e-72) PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max];; (*SWP) sp|Q42699|METE_CATRO (e_value=6e-73) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=9e-70) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=4e-84) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00029993g0001.1 protein ; (*GB) gi|224070027|ref|XP_002303104.1| (e_value=2e-15) ammonium transporter [Populus trichocarpa];; (*SWP) sp|P58905|AMT11_SOLLC (e_value=6e-15) Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1;; (*TAIR) AT1G64780.1 (e_value=2e-14) | Symbols: ATAMT1;2, AMT1;2 | ammonium transporter 1;2 | chr1:24061021-24062565 REVERSE LENGTH=514;; (*ITAG) Solyc09g090730.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65513401-65514873 transcript_region:SL2.40ch09:65513401..65514873- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** Q09J80_9ROSI); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00028333g0001.1 protein NbC23765889g0001.1 protein ; (*GB) gi|297800398|ref|XP_002868083.1| (e_value=7e-46) hypothetical protein ARALYDRAFT_355042 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q709C8|VP13C_HUMAN (e_value=4e-14) Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1;; (*TAIR) AT4G17140.1 (e_value=8e-48) | Symbols: | pleckstrin homology (PH) domain-containing protein | chr4:9613617-9636618 REVERSE LENGTH=4216;; (*ITAG) Solyc08g077500.2.1 (e_value=6e-55) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00009348g0001.1 protein NbS00018678g0001.1 protein ; (*GB) gi|350539375|ref|NP_001233878.1| (e_value=4e-112) isocitrate lyase [Solanum lycopersicum];; (*SWP) sp|P49297|ACEA_SOLLC (e_value=1e-113) Isocitrate lyase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G21720.1 (e_value=5e-112) | Symbols: ICL | isocitrate lyase | chr3:7652789-7655873 REVERSE LENGTH=576;; (*ITAG) Solyc07g052480.2.1 (e_value=3e-115) genomic_reference:SL2.40ch07 gene_region:58294426-58296992 transcript_region:SL2.40ch07:58294426..58296992- go_terms:GO:0046421,GO:0004451 functional_description:"Isocitrate lyase (AHRD V1 **** Q9FQD2_IPOBA); contains Interpro domain(s) IPR006254 Isocitrate lyase "; GO:0046421,GO:0004451 NbS00024285g0004.1 protein NbS00010446g0003.1 protein NbS00010446g0004.1 protein NbS00030025g0003.1 protein ; (*ITAG) Solyc11g006080.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:864350-870452 transcript_region:SL2.40ch11:864350..870452- functional_description:"Unknown Protein (AHRD V1)"; NbS00008616g0001.1 protein NbS00048124g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-25) RNase H family protein [Solanum demissum];; (*ITAG) Solyc10g047890.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00021966g0001.1 protein ; (*GB) gi|147858394|emb|CAN81408.1| (e_value=7e-20) hypothetical protein VITISV_010447 [Vitis vinifera];; (*TAIR) AT3G52050.3 (e_value=3e-15) | Symbols: | 5'-3' exonuclease family protein | chr3:19305159-19309398 FORWARD LENGTH=448; NbS00004193g0001.1 protein ; (*GB) gi|334305730|sp|A6YIH8.1|C7D55_HYOMU (e_value=6e-15) RecName: Full=Premnaspirodiene oxygenase; Short=HPO; AltName: Full=Cytochrome P450 71D55;; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=2e-16) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*ITAG) Solyc10g084590.2.1 (e_value=2e-18) genomic_reference:SL2.40ch10 gene_region:63374924-63376677 transcript_region:SL2.40ch10:63374924..63376677+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00003695g0001.1 protein ; (*GB) gi|225428318|ref|XP_002282981.1| (e_value=5e-61) PREDICTED: monosaccharide-sensing protein 2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9SD00|MSSP3_ARATH (e_value=4e-45) Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1;; (*TAIR) AT3G51490.1 (e_value=3e-46) | Symbols: TMT3 | tonoplast monosaccharide transporter3 | chr3:19105018-19107562 REVERSE LENGTH=729;; (*ITAG) Solyc03g032040.2.1 (e_value=4e-78) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00010008g0101.1 protein NbC23558792g0001.1 protein ; (*GB) gi|5931765|emb|CAB56619.1| (e_value=4e-24) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q84XF3|DRP1B_ARATH (e_value=2e-23) Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1;; (*TAIR) AT3G61760.1 (e_value=1e-24) | Symbols: ADL1B, DL1B | DYNAMIN-like 1B | chr3:22860546-22864092 REVERSE LENGTH=610;; (*ITAG) Solyc01g095970.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbC23998229g0001.1 protein ; (*GB) gi|255569587|ref|XP_002525759.1| (e_value=6e-27) meiotic recombination repair protein, putative [Ricinus communis];; (*SWP) sp|Q9XGM2|MRE11_ARATH (e_value=6e-27) Double-strand break repair protein MRE11 OS=Arabidopsis thaliana GN=MRE11 PE=2 SV=1;; (*TAIR) AT5G54260.1 (e_value=5e-28) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720;; (*ITAG) Solyc09g009340.1.1 (e_value=5e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00043286g0001.1 protein ; (*GB) gi|290767094|gb|ADD60395.1| (e_value=1e-47) thioredoxin peroxidase 1 [Solanum tuberosum];; (*SWP) sp|Q9XEX2|PRX2B_ARATH (e_value=7e-44) Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1;; (*TAIR) AT1G65980.1 (e_value=5e-45) | Symbols: TPX1 | thioredoxin-dependent peroxidase 1 | chr1:24559524-24560753 REVERSE LENGTH=162;; (*ITAG) Solyc07g020860.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:14295272-14300912 transcript_region:SL2.40ch07:14295272..14300912+ go_terms:GO:0008379 functional_description:"Peroxiredoxin (AHRD V1 **-- D2D300_GOSHI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0008379 NbS00031332g0001.1 protein ; (*ITAG) Solyc08g043200.1.1 (e_value=5e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:30103548-30104252 transcript_region:SL2.40ch08:30103548..30104252+ functional_description:"Unknown Protein (AHRD V1)"; NbC24473619g0001.1 protein ; (*GB) gi|8778269|gb|AAF79278.1|AC068602_1 (e_value=4e-82) F14D16.2 [Arabidopsis thaliana];; (*SWP) sp|Q9SSF9|PP123_ARATH (e_value=5e-84) Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1;; (*TAIR) AT1G74750.1 (e_value=4e-85) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28086800-28089367 FORWARD LENGTH=855;; (*ITAG) Solyc03g113380.2.1 (e_value=3e-93) genomic_reference:SL2.40ch03 gene_region:57579634-57586074 transcript_region:SL2.40ch03:57579634..57586074- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KS48_ARALY); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; NbS00003313g0001.1 protein NbS00023191g0002.1 protein NbS00022657g0001.1 protein NbS00009934g0001.1 protein NbS00004770g0001.1 protein ; (*ITAG) Solyc05g012500.2.1 (e_value=3e-21) genomic_reference:SL2.40ch05 gene_region:5742002-5745384 transcript_region:SL2.40ch05:5742002..5745384- go_terms:GO:0045449 functional_description:"WRKY transcription factor 29 (AHRD V1 *-*- Q6IEQ2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00007567g0003.1 protein NbS00020197g0001.1 protein NbC24030342g0001.1 protein ; (*GB) gi|356544882|ref|XP_003540876.1| (e_value=8e-22) PREDICTED: E3 ubiquitin-protein ligase UPL3-like [Glycine max];; (*SWP) sp|Q6WWW4|UPL3_ARATH (e_value=6e-17) E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1;; (*TAIR) AT4G38600.1 (e_value=5e-18) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888;; (*ITAG) Solyc01g111530.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:89516519-89527791 transcript_region:SL2.40ch01:89516519..89527791+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 4 (AHRD V1 *-** D7M7X1_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00002458g0008.1 protein NbS00002458g0009.1 protein NbC23251784g0001.1 protein ; (*GB) gi|2208960|emb|CAA69387.1| (e_value=5e-26) nitrate transporter [Nicotiana plumbaginifolia];; (*SWP) sp|Q9FJH8|NRT24_ARATH (e_value=4e-19) High affinity nitrate transporter 2.4 OS=Arabidopsis thaliana GN=NRT2.4 PE=2 SV=1;; (*TAIR) AT5G60770.1 (e_value=3e-20) | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2.4 | chr5:24444396-24447026 FORWARD LENGTH=527;; (*ITAG) Solyc11g069740.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51429992-51432438 transcript_region:SL2.40ch11:51429992..51432438+ functional_description:"Nitrate transporter (AHRD V1 *-*- O04431_NICPL); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00002618g0001.1 protein ; (*GB) gi|255538356|ref|XP_002510243.1| (e_value=1e-51) dihydroflavonal-4-reductase, putative [Ricinus communis];; (*TAIR) AT4G33360.2 (e_value=1e-52) | Symbols: FLDH | NAD(P)-binding Rossmann-fold superfamily protein | chr4:16068123-16069374 REVERSE LENGTH=305;; (*ITAG) Solyc12g088880.1.1 (e_value=6e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62523783-62527414 transcript_region:SL2.40ch12:62523783..62527414- go_terms:GO:0044237,GO:0008152 functional_description:"Epimerase/dehydratase (AHRD V1 ***- C7JBC7_ACEP3); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00018347g0001.1 protein ; (*ITAG) Solyc03g032180.2.1 (e_value=3e-21) genomic_reference:SL2.40ch03 gene_region:8959321-8968406 transcript_region:SL2.40ch03:8959321..8968406+ go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *--- CCA_STAES); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00002078g0002.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=3e-33) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00018983g0002.1 protein NbS00018983g0005.1 protein NbS00010780g0002.1 protein NbS00010780g0004.1 protein ; (*GB) gi|297734460|emb|CBI15707.3| (e_value=2e-114) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q14149|MORC3_HUMAN (e_value=1e-14) MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3;; (*TAIR) AT4G24970.1 (e_value=4e-101) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:12831125-12835449 FORWARD LENGTH=707;; (*ITAG) Solyc03g097520.2.1 (e_value=4e-126) genomic_reference:SL2.40ch03 gene_region:53302012-53315859 transcript_region:SL2.40ch03:53302012..53315859+ go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger protein 4 (AHRD V1 *--- A1YR23_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00022341g0004.1 protein NbS00032079g0002.1 protein NbS00010835g0001.1 protein ; (*GB) gi|186512097|ref|NP_193857.3| (e_value=3e-22) Sulfite exporter TauE/SafE family protein [Arabidopsis thaliana];; (*TAIR) AT4G21250.1 (e_value=7e-25) | Symbols: | Sulfite exporter TauE/SafE family protein | chr4:11325030-11326637 FORWARD LENGTH=449;; (*ITAG) Solyc02g079980.2.1 (e_value=3e-34) genomic_reference:SL2.40ch02 gene_region:38924299-38926747 transcript_region:SL2.40ch02:38924299..38926747- go_terms:GO:0005515 functional_description:"Os01g0786800 protein (Fragment) (AHRD V1 ***- Q0JIP0_ORYSJ); contains Interpro domain(s) IPR002781 Protein of unknown function DUF81 "; GO:0005515 NbS00000328g0005.1 protein NbC23484458g0001.1 protein ; (*GB) gi|296087967|emb|CBI35250.3| (e_value=9e-24) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C8J2|NIFU5_ARATH (e_value=2e-21) NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1;; (*TAIR) AT1G51390.1 (e_value=2e-22) | Symbols: NFU5, ATNFU1 | NFU domain protein 5 | chr1:19050427-19051753 FORWARD LENGTH=275;; (*ITAG) Solyc11g007120.1.1 (e_value=1e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1576541-1580907 transcript_region:SL2.40ch11:1576541..1580907+ go_terms:GO:0005515,GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_HAMD5); contains Interpro domain(s) IPR017065 HIRA-interacting protein 5 "; GO:0005515,GO:0005198 NbS00035232g0001.1 protein NbS00017515g0003.1 protein ; (*GB) gi|224125040|ref|XP_002329876.1| (e_value=3e-21) predicted protein [Populus trichocarpa]; NbS00007581g0001.1 protein ; (*ITAG) Solyc00g023590.2.1 (e_value=7e-22) genomic_reference:SL2.40ch00 gene_region:12141025-12143724 transcript_region:SL2.40ch00:12141025..12143724+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007581g0002.1 protein NbS00054666g0001.1 protein ; (*ITAG) Solyc03g121690.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:63832553-63833215 transcript_region:SL2.40ch03:63832553..63833215- go_terms:GO:0008270 functional_description:"RING finger protein 13 (AHRD V1 *--- RNF13_MOUSE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00003383g0004.1 protein NbS00005104g0002.1 protein NbS00002225g0006.1 protein NbS00002055g0001.1 protein NbS00013521g0001.1 protein NbS00018694g0002.1 protein NbS00008170g0003.1 protein NbC24080257g0001.1 protein ; (*GB) gi|255544896|ref|XP_002513509.1| (e_value=1e-45) nucleolar GTP-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=4e-37) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=3e-38) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc07g053730.2.1 (e_value=8e-54) genomic_reference:SL2.40ch07 gene_region:59475787-59478249 transcript_region:SL2.40ch07:59475787..59478249- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00011388g0001.1 protein NbS00011087g0002.1 protein ; (*ITAG) Solyc05g009640.2.1 (e_value=9e-32) genomic_reference:SL2.40ch05 gene_region:3847068-3849452 transcript_region:SL2.40ch05:3847068..3849452+ go_terms:GO:0003700 functional_description:"MYC2b transcription factor (AHRD V1 *-** D7P236_TOBAC); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00003107g0001.1 protein NbC25053203g0001.1 protein ; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=7e-39) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=2e-40) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=7e-33) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=1e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbC24079993g0001.1 protein NbS00003017g0002.1 protein NbS00015597g0004.1 protein NbS00025225g0001.1 protein NbS00059126g0001.1 protein ; (*GB) gi|147806138|emb|CAN70007.1| (e_value=5e-96) hypothetical protein VITISV_038750 [Vitis vinifera];; (*SWP) sp|Q6YBV0|S36A4_HUMAN (e_value=3e-17) Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1;; (*TAIR) AT5G65990.1 (e_value=4e-74) | Symbols: | Transmembrane amino acid transporter family protein | chr5:26394955-26396321 FORWARD LENGTH=427;; (*ITAG) Solyc03g032090.1.1 (e_value=7e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:8889972-8891255 transcript_region:SL2.40ch03:8889972..8891255+ go_terms:GO:0015187 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7LI10_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015187 NbC23204936g0001.1 protein ; (*GB) gi|224110658|ref|XP_002315593.1| (e_value=7e-31) SET domain-containing protein [Populus trichocarpa];; (*SWP) sp|O22781|SUVH2_ARATH (e_value=8e-24) Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 OS=Arabidopsis thaliana GN=SUVH2 PE=1 SV=1;; (*TAIR) AT2G33290.1 (e_value=6e-25) | Symbols: SUVH2, SDG3, ATSUVH2 | SU(VAR)3-9 homolog 2 | chr2:14110078-14112033 FORWARD LENGTH=651;; (*ITAG) Solyc09g090810.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65573418-65575508 transcript_region:SL2.40ch09:65573418..65575508+ go_terms:GO:0005634 functional_description:"Euchromatic histone lysine N-methyltransferase 2 (AHRD V1 *-*- A2CG73_MOUSE); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00033183g0001.1 protein NbS00039350g0001.1 protein NbS00023620g0002.1 protein ; (*GB) gi|296084846|emb|CBI27728.3| (e_value=4e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g113740.2.1 (e_value=1e-25) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00030961g0001.1 protein NbS00005177g0001.1 protein NbC23409183g0001.1 protein ; (*GB) gi|356529805|ref|XP_003533478.1| (e_value=5e-18) PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max];; (*SWP) sp|Q0WLC6|PP349_ARATH (e_value=5e-16) Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2;; (*TAIR) AT4G34830.1 (e_value=4e-17) | Symbols: MRL1 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16599976-16605994 REVERSE LENGTH=1089;; (*ITAG) Solyc01g111020.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:89187941-89202033 transcript_region:SL2.40ch01:89187941..89202033- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L4E9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00002763g0004.1 protein NbS00002763g0008.1 protein ; (*GB) gi|255541336|ref|XP_002511732.1| (e_value=0.0) cytohesin 1, 2, 3, putative [Ricinus communis];; (*SWP) sp|Q9Y6D5|BIG2_HUMAN (e_value=3e-42) Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3;; (*TAIR) AT1G01960.1 (e_value=1e-180) | Symbols: EDA10 | SEC7-like guanine nucleotide exchange family protein | chr1:330830-337582 REVERSE LENGTH=1750;; (*ITAG) Solyc01g091460.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00012401g0001.1 protein ; (*GB) gi|358349430|ref|XP_003638740.1| (e_value=5e-22) hypothetical protein MTR_142s1012 [Medicago truncatula];; (*TAIR) AT3G50370.1 (e_value=6e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=2e-28) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbS00025284g0001.1 protein NbS00025284g0002.1 protein NbS00013196g0003.1 protein ; (*ITAG) Solyc03g111270.2.1 (e_value=1e-22) genomic_reference:SL2.40ch03 gene_region:55935333-55940921 transcript_region:SL2.40ch03:55935333..55940921+ go_terms:GO:0003676 functional_description:"DNA binding protein (AHRD V1 ***- B6T3K5_MAIZE); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; GO:0003676 NbS00009473g0001.1 protein ; (*GB) gi|296090001|emb|CBI39820.3| (e_value=4e-105) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13300.2 (e_value=1e-82) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309;; (*ITAG) Solyc10g005920.2.1 (e_value=3e-122) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00015658g0002.1 protein NbC24172700g0001.1 protein ; (*GB) gi|374095607|gb|AEY85031.1| (e_value=9e-67) putative pre-mRNA splicing factor [Camellia sinensis];; (*SWP) sp|A1A5S1|PRP6_RAT (e_value=5e-44) Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2 SV=1;; (*TAIR) AT4G03430.1 (e_value=2e-62) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=1e-76) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00013932g0002.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=4e-27) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00016838g0003.1 protein NbS00030601g0001.1 protein NbS00024442g0001.1 protein NbS00028200g0001.1 protein NbS00045444g0002.1 protein NbS00013233g0001.1 protein NbS00023241g0001.1 protein ; (*GB) gi|225456934|ref|XP_002281408.1| (e_value=1e-27) PREDICTED: tryptophan aminotransferase-related protein 2 [Vitis vinifera];; (*SWP) sp|Q94A02|TAR2_ARATH (e_value=1e-23) Tryptophan aminotransferase-related protein 2 OS=Arabidopsis thaliana GN=TAR2 PE=2 SV=1;; (*TAIR) AT4G24670.2 (e_value=9e-25) | Symbols: TAR2 | tryptophan aminotransferase related 2 | chr4:12727940-12730694 REVERSE LENGTH=440;; (*ITAG) Solyc03g112460.2.1 (e_value=4e-43) genomic_reference:SL2.40ch03 gene_region:56913246-56918493 transcript_region:SL2.40ch03:56913246..56918493- go_terms:GO:0016846,GO:0030170 functional_description:"Alliinase (Fragment) (AHRD V1 ***- Q94EJ8_ALLFI); contains Interpro domain(s) IPR006948 Allinase, C-terminal "; GO:0016846,GO:0030170 NbS00005126g0003.1 protein NbS00058278g0001.1 protein NbS00007761g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=3e-13) hypothetical protein [Cucumis melo subsp. melo]; NbS00016902g0205.1 protein NbS00009179g0001.1 protein NbS00031444g0001.1 protein ; (*GB) gi|113205348|gb|ABI34354.1| (e_value=2e-14) Retrotransposon gag protein [Solanum demissum]; NbS00013861g0004.1 protein NbS00013861g0101.1 protein NbS00001118g0002.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001118g0003.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=6e-22) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC23699290g0001.1 protein ; (*GB) gi|359485026|ref|XP_003633201.1| (e_value=3e-48) PREDICTED: plasma membrane ATPase 4 isoform 2 [Vitis vinifera];; (*SWP) sp|Q03194|PMA4_NICPL (e_value=1e-49) Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1;; (*TAIR) AT2G18960.1 (e_value=3e-50) | Symbols: AHA1, PMA, OST2, HA1 | H(+)-ATPase 1 | chr2:8221858-8227268 FORWARD LENGTH=949;; (*ITAG) Solyc07g017780.2.1 (e_value=1e-50) genomic_reference:SL2.40ch07 gene_region:8095828-8102636 transcript_region:SL2.40ch07:8095828..8102636+ go_terms:GO:0008553 functional_description:"H-ATPase (AHRD V1 **** Q8L6I3_ORYSJ); contains Interpro domain(s) IPR006534 ATPase, P-type, plasma-membrane proton-efflux "; GO:0008553 NbS00019745g0003.1 protein ; (*GB) gi|356538609|ref|XP_003537794.1| (e_value=3e-74) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD2-like [Glycine max];; (*SWP) sp|Q9SMX5|AGD4_ARATH (e_value=1e-70) ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2;; (*TAIR) AT1G10870.1 (e_value=7e-72) | Symbols: AGD4 | ARF-GAP domain 4 | chr1:3616905-3623612 REVERSE LENGTH=775;; (*ITAG) Solyc04g008660.2.1 (e_value=4e-92) genomic_reference:SL2.40ch04 gene_region:2289220-2305938 transcript_region:SL2.40ch04:2289220..2305938+ go_terms:GO:0032312,GO:0005737 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312,GO:0005737 NbS00025398g0001.1 protein NbS00025398g0003.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=9e-13) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbC23934931g0001.1 protein ; (*GB) gi|1841468|emb|CAA71881.1| (e_value=3e-37) Tyrosyl-tRNA synthetase [Nicotiana tabacum];; (*TAIR) AT2G33840.1 (e_value=2e-27) | Symbols: | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr2:14315011-14317329 FORWARD LENGTH=385;; (*ITAG) Solyc01g109360.2.1 (e_value=5e-40) genomic_reference:SL2.40ch01 gene_region:88097789-88103284 transcript_region:SL2.40ch01:88097789..88103284+ go_terms:GO:0004831,GO:0005153 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 **** P93363_TOBAC); contains Interpro domain(s) IPR016485 Tyrosine tRNA ligase, archaeal/eukaryotic "; GO:0004831,GO:0005153 NbS00000197g0003.1 protein NbS00004738g0001.1 protein NbS00018991g0003.1 protein ; (*GB) gi|359492715|ref|XP_002280631.2| (e_value=3e-40) PREDICTED: uncharacterized protein LOC100255769 [Vitis vinifera];; (*TAIR) AT4G16310.1 (e_value=1e-27) | Symbols: LDL3 | LSD1-like 3 | chr4:9218636-9224764 FORWARD LENGTH=1628;; (*ITAG) Solyc04g081100.2.1 (e_value=9e-57) genomic_reference:SL2.40ch04 gene_region:62733558-62743254 transcript_region:SL2.40ch04:62733558..62743254- functional_description:"Amine oxidase (AHRD V1 *-*- A4RUP0_OSTLU); contains Interpro domain(s) IPR002937 Amine oxidase "; NbS00029613g0003.1 protein NbS00029613g0004.1 protein ; (*GB) gi|224059140|ref|XP_002299735.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=3e-21) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.3 (e_value=2e-22) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19410118-19413961 REVERSE LENGTH=794;; (*ITAG) Solyc12g044410.1.1 (e_value=2e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44793673-44801092 transcript_region:SL2.40ch12:44793673..44801092+ go_terms:GO:0006355,GO:0045449 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0006355,GO:0045449 NbC24197058g0001.1 protein ; (*GB) gi|149928549|ref|ZP_01916777.1| (e_value=3e-61) Enoyl-CoA hydratase/isomerase [Limnobacter sp. MED105];; (*SWP) sp|Q52995|ECHH_RHIME (e_value=1e-32) Probable enoyl-CoA hydratase OS=Rhizobium meliloti (strain 1021) GN=fadB1 PE=3 SV=2; NbS00008101g0002.1 protein NbS00004415g0008.1 protein NbS00006623g0002.1 protein NbS00026158g0001.1 protein ; (*GB) gi|149676198|dbj|BAF64710.1| (e_value=5e-19) putative transposase [Ipomoea tricolor];; (*TAIR) AT2G05642.1 (e_value=4e-11) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:2098253-2100867 REVERSE LENGTH=532; NbS00032542g0004.1 protein NbS00048141g0002.1 protein ; (*GB) gi|302142192|emb|CBI19395.3| (e_value=2e-39) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84WW1|FB140_ARATH (e_value=1e-19) F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=2 SV=1;; (*TAIR) AT3G12350.1 (e_value=8e-21) | Symbols: | F-box family protein | chr3:3931626-3933104 FORWARD LENGTH=422; NbS00020625g0004.1 protein ; (*GB) gi|380853844|gb|AFE88229.1| (e_value=2e-137) acetyl-CoA carboxylase [Nicotiana tabacum];; (*SWP) sp|B9HBA8|ACCC1_POPTR (e_value=7e-118) Biotin carboxylase 1, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_831870 PE=2 SV=1;; (*TAIR) AT5G35360.1 (e_value=1e-112) | Symbols: CAC2 | acetyl Co-enzyme a carboxylase biotin carboxylase subunit | chr5:13584300-13588268 FORWARD LENGTH=537;; (*ITAG) Solyc01g008330.2.1 (e_value=1e-130) genomic_reference:SL2.40ch01 gene_region:2451880-2461756 transcript_region:SL2.40ch01:2451880..2461756+ go_terms:GO:0008152,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase biotin carboxylase (AHRD V1 ***- B4VQU4_9CYAN); contains Interpro domain(s) IPR004549 Acetyl-CoA carboxylase, biotin carboxylase "; GO:0008152,GO:0005524,GO:0016874 NbC23729813g0001.1 protein ; (*GB) gi|11611667|gb|AAG39002.1|AF213399_1 (e_value=5e-22) SLT1 protein [Nicotiana tabacum];; (*TAIR) AT2G37570.1 (e_value=2e-23) | Symbols: SLT1 | HSP20-like chaperones superfamily protein | chr2:15761466-15762950 REVERSE LENGTH=494;; (*ITAG) Solyc10g086420.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64566624-64568126 transcript_region:SL2.40ch10:64566624..64568126- go_terms:GO:0006508 functional_description:"SLT1 protein (AHRD V1 **-- Q9FQY3_TOBAC); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; GO:0006508 NbS00034785g0001.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=1e-34) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=3e-27) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbS00041844g0001.1 protein NbS00013183g0002.1 protein NbS00008876g0001.1 protein NbC25164779g0001.1 protein ; (*ITAG) Solyc01g060260.2.1 (e_value=3e-33) genomic_reference:SL2.40ch01 gene_region:62793560-62795045 transcript_region:SL2.40ch01:62793560..62795045+ go_terms:GO:0008083 functional_description:"Unknown Protein (AHRD V1)"; GO:0008083 NbS00021626g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00010463g0002.1 protein NbS00001416g0001.1 protein ; (*GB) gi|225458876|ref|XP_002285405.1| (e_value=5e-65) PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Vitis vinifera];; (*SWP) sp|Q9SY55|ECA3_ARATH (e_value=2e-60) Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3;; (*TAIR) AT1G10130.1 (e_value=2e-61) | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998;; (*ITAG) Solyc07g022780.2.1 (e_value=1e-78) genomic_reference:SL2.40ch07 gene_region:21560309-21580902 transcript_region:SL2.40ch07:21560309..21580902+ go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00009529g0002.1 protein ; (*ITAG) Solyc02g082540.2.1 (e_value=4e-33) genomic_reference:SL2.40ch02 gene_region:40780785-40792518 transcript_region:SL2.40ch02:40780785..40792518- go_terms:GO:0005515 functional_description:"Actin cytoskeleton-regulatory complex protein pan1 (AHRD V1 *--- PAN1_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type IPR000261 EPS15 homology (EH) "; GO:0005515 NbS00034749g0003.1 protein ; (*GB) gi|357473503|ref|XP_003607036.1| (e_value=3e-22) Enhanced disease susceptibility [Medicago truncatula];; (*SWP) sp|Q8W4G3|MATE4_ARATH (e_value=4e-19) MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1;; (*TAIR) AT2G21340.2 (e_value=3e-20) | Symbols: | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=556;; (*ITAG) Solyc10g054110.1.1 (e_value=7e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50079186-50084429 transcript_region:SL2.40ch10:50079186..50084429- go_terms:GO:0016020 functional_description:"MATE efflux family protein (AHRD V1 **-- D7CWB4_TRURR); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00004411g0001.1 protein NbS00004411g0012.1 protein NbS00004411g0016.1 protein NbS00004411g0017.1 protein NbS00004411g0004.1 protein ; (*GB) gi|255579988|ref|XP_002530828.1| (e_value=7e-24) conserved hypothetical protein [Ricinus communis]; NbS00004411g0008.1 protein NbS00030560g0002.1 protein NbS00028176g0001.1 protein NbS00018285g0004.1 protein ; (*GB) gi|255574241|ref|XP_002528035.1| (e_value=2e-15) catalytic, putative [Ricinus communis];; (*TAIR) AT4G10030.1 (e_value=3e-14) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:6270490-6273098 REVERSE LENGTH=380;; (*ITAG) Solyc06g064640.2.1 (e_value=5e-56) genomic_reference:SL2.40ch06 gene_region:36668100-36682313 transcript_region:SL2.40ch06:36668100..36682313+ functional_description:"Alpha/beta hydrolase (AHRD V1 **-- D7W6X8_9FLAO); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00014682g0002.1 protein ; (*GB) gi|193290712|gb|ACF17664.1| (e_value=2e-41) putative long-chain acyl-CoA synthetase [Capsicum annuum];; (*SWP) sp|Q9SJD4|LACS8_ARATH (e_value=9e-39) Long chain acyl-CoA synthetase 8 OS=Arabidopsis thaliana GN=LACS8 PE=2 SV=1;; (*TAIR) AT2G04350.2 (e_value=7e-40) | Symbols: LACS8 | AMP-dependent synthetase and ligase family protein | chr2:1516086-1519178 FORWARD LENGTH=720;; (*ITAG) Solyc07g045290.2.1 (e_value=2e-43) genomic_reference:SL2.40ch07 gene_region:55717054-55724687 transcript_region:SL2.40ch07:55717054..55724687+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase 3 (AHRD V1 **** ACSL3_HUMAN); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00022160g0002.1 protein NbS00004585g0001.1 protein NbS00018114g0002.1 protein NbS00018114g0003.1 protein NbS00016652g0001.1 protein ; (*GB) gi|359479028|ref|XP_002284705.2| (e_value=9e-40) PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8LCU7|MECR_ARATH (e_value=3e-39) Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1;; (*TAIR) AT3G45770.1 (e_value=2e-40) | Symbols: | Polyketide synthase, enoylreductase family protein | chr3:16805753-16807774 REVERSE LENGTH=375;; (*ITAG) Solyc11g072650.1.1 (e_value=4e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52957116-52960112 transcript_region:SL2.40ch11:52957116..52960112- go_terms:GO:0005524 functional_description:"Trans-2-enoyl CoA reductase (AHRD V1 **-- C5MRG3_9ROSI); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005524 NbS00024431g0001.1 protein NbC26058683g0001.1 protein ; (*GB) gi|7643796|gb|AAF65513.1| (e_value=4e-50) GTP-binding protein [Capsicum annuum];; (*SWP) sp|Q5ZM25|OLA1_CHICK (e_value=4e-33) Obg-like ATPase 1 OS=Gallus gallus GN=OLA1 PE=2 SV=1;; (*TAIR) AT1G30580.1 (e_value=1e-47) | Symbols: | GTP binding | chr1:10831953-10835454 REVERSE LENGTH=394;; (*ITAG) Solyc02g023970.2.1 (e_value=9e-52) genomic_reference:SL2.40ch02 gene_region:15314779-15327219 transcript_region:SL2.40ch02:15314779..15327219- go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** Q9M7P3_CAPAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00000597g0105.1 protein NbS00009999g0301.1 protein NbS00028654g0002.1 protein ; (*GB) gi|225440932|ref|XP_002277002.1| (e_value=5e-43) PREDICTED: BTB/POZ domain-containing protein FBL11-like [Vitis vinifera];; (*SWP) sp|Q8S8F2|FBL11_ARATH (e_value=9e-32) BTB/POZ domain-containing protein FBL11 OS=Arabidopsis thaliana GN=FBL11 PE=2 SV=2;; (*TAIR) AT2G36370.1 (e_value=6e-33) | Symbols: | ubiquitin-protein ligases | chr2:15247894-15252800 FORWARD LENGTH=898;; (*ITAG) Solyc10g085600.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64040024-64052725 transcript_region:SL2.40ch10:64040024..64052725- go_terms:GO:0005515 functional_description:"F-box/LRR-repeat protein 4 (AHRD V1 *-*- FBL4_ARATH); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00028654g0004.1 protein NbS00009428g0001.1 protein NbC23550584g0001.1 protein ; (*GB) gi|359472760|ref|XP_003631193.1| (e_value=6e-18) PREDICTED: uncharacterized protein LOC100247555 [Vitis vinifera];; (*TAIR) AT5G44800.1 (e_value=1e-13) | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr5:18083659-18092162 REVERSE LENGTH=2223;; (*ITAG) Solyc02g068560.2.1 (e_value=8e-25) genomic_reference:SL2.40ch02 gene_region:33090650-33105873 transcript_region:SL2.40ch02:33090650..33105873- go_terms:GO:0005634,GO:0005524,GO:0008270,GO:0045449 functional_description:"Chromodomain helicase DNA binding protein 5 (AHRD V1 *--- A2A8L1_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005634,GO:0005524,GO:0008270,GO:0045449 NbS00041657g0001.1 protein NbS00030248g0001.1 protein NbS00041351g0001.1 protein ; (*GB) gi|255550197|ref|XP_002516149.1| (e_value=1e-23) endo-1,4-beta-glucanase, putative [Ricinus communis];; (*SWP) sp|Q6K7G9|GUN8_ORYSJ (e_value=2e-19) Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=2e-20) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=3e-37) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00005281g0001.1 protein ; (*GB) gi|350536997|ref|NP_001233764.1| (e_value=2e-53) TAGL12 transcription factor [Solanum lycopersicum];; (*SWP) sp|Q2QW55|MAD33_ORYSJ (e_value=1e-23) MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2;; (*TAIR) AT1G71692.1 (e_value=9e-20) | Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952903-26954939 REVERSE LENGTH=211;; (*ITAG) Solyc11g032100.1.1 (e_value=3e-57) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:21504136-21523999 transcript_region:SL2.40ch11:21504136..21523999+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 ***- B2KJ31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00030424g0001.1 protein ; (*GB) gi|384081606|ref|NP_001244907.1| (e_value=7e-26) cytokinin oxidase/dehydrogenase-like 5 precursor [Solanum lycopersicum];; (*SWP) sp|Q5JLP4|CKX4_ORYSJ (e_value=5e-20) Cytokinin dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CKX4 PE=2 SV=1;; (*TAIR) AT3G63440.1 (e_value=8e-21) | Symbols: ATCKX6, CKX6, ATCKX7 | cytokinin oxidase/dehydrogenase 6 | chr3:23424291-23426265 FORWARD LENGTH=533;; (*ITAG) Solyc04g016430.2.1 (e_value=1e-28) genomic_reference:SL2.40ch04 gene_region:7229849-7232636 transcript_region:SL2.40ch04:7229849..7232636- go_terms:GO:0019139 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 **** C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0019139 NbS00047225g0001.1 protein NbS00045960g0003.1 protein NbS00032978g0003.1 protein ; (*GB) gi|225242|prf||1211235CA (e_value=4e-30) ORF 1708;; (*SWP) sp|Q8S8V2|YCF2A_ATRBE (e_value=2e-31) Protein ycf2 A OS=Atropa belladonna GN=ycf2-A PE=3 SV=1;; (*ITAG) ATCG01280.1 (e_value=8e-23) | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA type, core | chrC:145291-152175 REVERSE LENGTH=2294;; (*ITAG) Solyc03g078010.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:42455418-42455918 transcript_region:SL2.40ch03:42455418..42455918- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 ***- D2KLP5_OLEEU); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00032978g0005.1 protein NbS00007038g0006.1 protein NbS00032861g0001.1 protein NbS00032861g0002.1 protein NbS00006379g0009.1 protein NbS00056297g0001.1 protein NbS00056297g0002.1 protein NbS00010324g0003.1 protein NbS00001948g0001.1 protein NbS00001948g0002.1 protein NbS00037099g0002.1 protein NbS00007844g0001.1 protein NbS00012784g0004.1 protein NbS00012784g0005.1 protein NbS00004460g0002.1 protein NbC23749211g0001.1 protein ; (*GB) gi|255555655|ref|XP_002518863.1| (e_value=8e-32) kinesin light chain, putative [Ricinus communis];; (*TAIR) AT4G10840.1 (e_value=2e-31) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:6656614-6659033 FORWARD LENGTH=609;; (*ITAG) Solyc08g008460.2.1 (e_value=4e-33) genomic_reference:SL2.40ch08 gene_region:2848726-2851059 transcript_region:SL2.40ch08:2848726..2851059- go_terms:GO:0005488 functional_description:"Kinesin light chain (AHRD V1 ***- B6SKU4_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00003007g0001.1 protein NbS00024324g0001.1 protein NbS00010644g0003.1 protein NbS00009983g0002.1 protein NbS00002506g0101.1 protein NbS00058880g0001.1 protein ; (*GB) gi|57013878|ref|YP_173352.1| (e_value=7e-38) hypothetical protein NitaMp002 [Nicotiana tabacum]; NbS00010501g0003.1 protein NbS00040126g0002.1 protein NbS00020706g0006.1 protein NbC24313821g0001.1 protein ; (*GB) gi|356532942|ref|XP_003535028.1| (e_value=1e-41) PREDICTED: uncharacterized protein LOC100804994 [Glycine max];; (*SWP) sp|Q8RWS6|FRO6_ARATH (e_value=2e-35) Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1;; (*TAIR) AT5G49730.1 (e_value=1e-36) | Symbols: ATFRO6, FRO6 | ferric reduction oxidase 6 | chr5:20201355-20204455 REVERSE LENGTH=738;; (*ITAG) Solyc01g102610.2.1 (e_value=5e-53) genomic_reference:SL2.40ch01 gene_region:83132817-83137292 transcript_region:SL2.40ch01:83132817..83137292- go_terms:GO:0000293 functional_description:"Ferric reductase oxidase (AHRD V1 **-* D6RVS5_HORVU); contains Interpro domain(s) IPR013130 Ferric reductase-like transmembrane component, N-terminal "; GO:0000293 NbS00050006g0002.1 protein NbC25458145g0001.1 protein ; (*GB) gi|224081148|ref|XP_002306310.1| (e_value=4e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|O24338|ASNS_SANAU (e_value=3e-42) Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3;; (*TAIR) AT5G10240.1 (e_value=8e-44) | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212934-3216418 REVERSE LENGTH=578;; (*ITAG) Solyc04g055200.2.1 (e_value=9e-47) genomic_reference:SL2.40ch04 gene_region:52971208-52976884 transcript_region:SL2.40ch04:52971208..52976884- go_terms:GO:0004066,GO:0042803 functional_description:"Asparagine synthase (Glutamine-hydrolyzing) (AHRD V1 **** D3RMB0_KLEVT); contains Interpro domain(s) IPR001962 Asparagine synthase "; GO:0004066,GO:0042803 NbS00038883g0001.1 protein NbS00006768g0001.1 protein ; (*GB) gi|225440787|ref|XP_002281618.1| (e_value=1e-62) PREDICTED: lysosomal Pro-X carboxypeptidase-like [Vitis vinifera];; (*SWP) sp|Q2TA14|PCP_BOVIN (e_value=3e-27) Lysosomal Pro-X carboxypeptidase OS=Bos taurus GN=PRCP PE=2 SV=1;; (*TAIR) AT2G24280.1 (e_value=8e-48) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:10334622-10336927 FORWARD LENGTH=494;; (*ITAG) Solyc09g010220.2.1 (e_value=1e-79) genomic_reference:SL2.40ch09 gene_region:3606323-3611596 transcript_region:SL2.40ch09:3606323..3611596+ go_terms:GO:0004185 functional_description:"Lysosomal Pro-X carboxypeptidase (AHRD V1 **-* B6TWH6_MAIZE); contains Interpro domain(s) IPR008758 Peptidase S28 "; GO:0004185 NbS00016566g0002.1 protein ; (*GB) gi|1890130|gb|AAB49704.1| (e_value=2e-25) valyl tRNA synthetase [Arabidopsis thaliana];; (*SWP) sp|P93736|SYV_ARATH (e_value=7e-27) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=6e-28) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=3e-33) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00007702g0101.1 protein NbS00051930g0003.1 protein NbS00025752g0001.1 protein NbS00008121g0003.1 protein NbS00030046g0001.1 protein NbS00014416g0004.1 protein ; (*GB) gi|356572474|ref|XP_003554393.1| (e_value=6e-19) PREDICTED: uncharacterized protein LOC100816619 [Glycine max];; (*TAIR) AT5G03430.1 (e_value=2e-17) | Symbols: | phosphoadenosine phosphosulfate (PAPS) reductase family protein | chr5:849237-852867 REVERSE LENGTH=497;; (*ITAG) Solyc09g008310.2.1 (e_value=6e-34) genomic_reference:SL2.40ch09 gene_region:1757098-1772595 transcript_region:SL2.40ch09:1757098..1772595- go_terms:GO:0008152,GO:0006777 functional_description:"CinA-like protein (AHRD V1 *--- CINAL_BACFN); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase "; GO:0008152,GO:0006777 NbS00028280g0001.1 protein ; (*ITAG) Solyc09g050010.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:32110655-32114764 transcript_region:SL2.40ch09:32110655..32114764- go_terms:GO:0008270,GO:0006278 functional_description:"Polyprotein (AHRD V1 ***- Q9AYC2_ORYSA); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; GO:0008270,GO:0006278 NbS00058641g0002.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbC23282174g0001.1 protein ; (*GB) gi|255545642|ref|XP_002513881.1| (e_value=4e-38) Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis];; (*SWP) sp|Q38970|ACC1_ARATH (e_value=5e-39) Acetyl-CoA carboxylase 1 OS=Arabidopsis thaliana GN=ACC1 PE=1 SV=1;; (*TAIR) AT1G36160.2 (e_value=4e-40) | Symbols: ACC1 | acetyl-CoA carboxylase 1 | chr1:13534196-13543773 FORWARD LENGTH=2254;; (*ITAG) Solyc12g056940.1.1 (e_value=1e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00014340g0001.1 protein NbS00015347g0001.1 protein ; (*ITAG) Solyc04g007720.2.1 (e_value=4e-19) genomic_reference:SL2.40ch04 gene_region:1401563-1404724 transcript_region:SL2.40ch04:1401563..1404724- go_terms:GO:0005634 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634 NbS00058299g0002.1 protein ; (*GB) gi|388513135|gb|AFK44629.1| (e_value=9e-24) unknown [Lotus japonicus];; (*SWP) sp|O23342|SECE1_ARATH (e_value=4e-21) Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana GN=SECE1 PE=1 SV=1;; (*TAIR) AT4G14870.1 (e_value=3e-22) | Symbols: SECE1 | secE/sec61-gamma protein transport protein | chr4:8517248-8517781 FORWARD LENGTH=177; NbS00006062g0001.1 protein NbC25072990g0001.1 protein ; (*GB) gi|323370547|gb|ADX43928.1| (e_value=3e-31) ADR1 [Solanum tuberosum];; (*SWP) sp|Q9LZ25|DRL30_ARATH (e_value=8e-15) Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1;; (*TAIR) AT5G04720.1 (e_value=6e-16) | Symbols: ADR1-L2 | ADR1-like 2 | chr5:1360748-1363665 FORWARD LENGTH=811;; (*ITAG) Solyc04g079420.2.1 (e_value=5e-34) genomic_reference:SL2.40ch04 gene_region:61521424-61524959 transcript_region:SL2.40ch04:61521424..61524959+ go_terms:GO:0016301 functional_description:"Nbs-lrr, resistance protein"; GO:0016301 NbS00009524g0001.1 protein NbS00053359g0001.1 protein ; (*GB) gi|217072658|gb|ACJ84689.1| (e_value=8e-32) unknown [Medicago truncatula];; (*SWP) sp|Q94EJ2|HDA8_ARATH (e_value=2e-27) Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1;; (*TAIR) AT1G08460.1 (e_value=2e-28) | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377;; (*ITAG) Solyc06g074080.2.1 (e_value=6e-38) genomic_reference:SL2.40ch06 gene_region:42180141-42183230 transcript_region:SL2.40ch06:42180141..42183230- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9HPV0_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0003714 NbC26327867g0002.1 protein NbS00027919g0001.1 protein NbS00037272g0001.1 protein ; (*GB) gi|225424926|ref|XP_002277342.1| (e_value=9e-15) PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera];; (*SWP) sp|Q9CAR3|KINGL_ARATH (e_value=8e-13) SNF1-related protein kinase regulatory subunit gamma-1-like OS=Arabidopsis thaliana GN=CBSCBS2 PE=2 SV=1;; (*TAIR) AT1G69800.2 (e_value=5e-14) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:26274416-26276325 REVERSE LENGTH=476;; (*ITAG) Solyc01g010700.2.1 (e_value=8e-19) genomic_reference:SL2.40ch01 gene_region:5726264-5728807 transcript_region:SL2.40ch01:5726264..5728807- functional_description:"AKIN gamma (AHRD V1 **-- B4FX20_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbC23486472g0001.1 protein ; (*GB) gi|298204564|emb|CBI23839.3| (e_value=1e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G09580.1 (e_value=7e-26) | Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr1:3104657-3106092 FORWARD LENGTH=217;; (*ITAG) Solyc01g104220.2.1 (e_value=2e-32) genomic_reference:SL2.40ch01 gene_region:84431022-84435420 transcript_region:SL2.40ch01:84431022..84435420+ go_terms:GO:0042802,GO:0032403 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0042802,GO:0032403 NbC23899306g0001.1 protein ; (*ITAG) Solyc10g080350.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbC23574986g0001.1 protein ; (*GB) gi|18076679|emb|CAC84774.1| (e_value=3e-39) P70 protein [Nicotiana tabacum];; (*SWP) sp|Q9ZQC5|ICR2_ARATH (e_value=2e-16) Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1;; (*TAIR) AT2G37080.1 (e_value=1e-17) | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581565-15584057 REVERSE LENGTH=583;; (*ITAG) Solyc09g007360.2.1 (e_value=1e-32) genomic_reference:SL2.40ch09 gene_region:953383-956950 transcript_region:SL2.40ch09:953383..956950- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbC25397795g0001.1 protein ; (*GB) gi|255636768|gb|ACU18718.1| (e_value=1e-39) unknown [Glycine max];; (*SWP) sp|P49971|SR541_SOLLC (e_value=6e-38) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT1G48900.2 (e_value=2e-32) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc12g042740.1.1 (e_value=5e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00050938g0001.1 protein ; (*GB) gi|87241403|gb|ABD33261.1| (e_value=1e-13) RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]; NbS00045519g0001.1 protein ; (*GB) gi|297739499|emb|CBI29681.3| (e_value=2e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9HCG7|GBA2_HUMAN (e_value=1e-12) Non-lysosomal glucosylceramidase OS=Homo sapiens GN=GBA2 PE=1 SV=2;; (*TAIR) AT5G49900.1 (e_value=3e-42) | Symbols: | Beta-glucosidase, GBA2 type family protein | chr5:20297235-20302019 REVERSE LENGTH=957;; (*ITAG) Solyc01g103230.2.1 (e_value=1e-74) genomic_reference:SL2.40ch01 gene_region:83638757-83653587 transcript_region:SL2.40ch01:83638757..83653587+ go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9SS77_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00003692g0002.1 protein NbS00015708g0003.1 protein ; (*GB) gi|255541005|ref|XP_002511567.1| (e_value=6e-12) Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis];; (*ITAG) Solyc03g116260.2.1 (e_value=1e-29) genomic_reference:SL2.40ch03 gene_region:59816914-59818332 transcript_region:SL2.40ch03:59816914..59818332+ go_terms:GO:0016707 functional_description:"Gibberellin 2-beta-dioxygenase 7 (AHRD V1 **-* G2OX7_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016707 NbS00047269g0002.1 protein NbC23636173g0001.1 protein ; (*GB) gi|225460189|ref|XP_002277079.1| (e_value=3e-36) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Vitis vinifera];; (*SWP) sp|Q54N83|SYLC_DICDI (e_value=4e-25) Leucine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=leuS PE=3 SV=1;; (*TAIR) AT1G09620.1 (e_value=4e-22) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00028058g0001.1 protein NbS00025855g0001.1 protein NbS00018096g0002.1 protein NbS00043987g0001.1 protein NbS00008765g0005.1 protein NbC23868309g0001.1 protein ; (*GB) gi|255586963|ref|XP_002534079.1| (e_value=1e-30) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04460.3 (e_value=6e-24) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263695 FORWARD LENGTH=863;; (*ITAG) Solyc11g007910.1.1 (e_value=7e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00001747g0001.1 protein NbS00001557g0004.1 protein NbS00024706g0003.1 protein ; (*GB) gi|224113397|ref|XP_002316482.1| (e_value=7e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7T339|CHMP5_DANRE (e_value=6e-26) Charged multivesicular body protein 5 OS=Danio rerio GN=chmp5 PE=2 SV=1;; (*TAIR) AT3G10640.1 (e_value=6e-47) | Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324905 REVERSE LENGTH=235;; (*ITAG) Solyc05g055170.2.1 (e_value=9e-52) genomic_reference:SL2.40ch05 gene_region:64073846-64078030 transcript_region:SL2.40ch05:64073846..64078030- go_terms:GO:0015031 functional_description:"Charged multivesicular body protein 5 (AHRD V1 **-- B6TYU1_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0015031 NbS00037775g0002.1 protein NbS00004920g0001.1 protein NbS00021599g0001.1 protein NbS00023066g0002.1 protein NbS00010763g0001.1 protein ; (*ITAG) Solyc07g032700.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00017242g0001.1 protein NbS00017242g0003.1 protein ; (*GB) gi|316996024|dbj|BAD83536.2| (e_value=4e-52) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=5e-35) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=7e-36) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=6e-55) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbC23224681g0001.1 protein ; (*GB) gi|146747227|gb|ABQ44212.1| (e_value=2e-36) galactinol synthase [Capsicum annuum];; (*TAIR) AT1G60470.1 (e_value=4e-36) | Symbols: AtGolS4, GolS4 | galactinol synthase 4 | chr1:22279181-22280454 REVERSE LENGTH=334;; (*ITAG) Solyc02g084980.2.1 (e_value=5e-39) genomic_reference:SL2.40ch02 gene_region:42590167-42591767 transcript_region:SL2.40ch02:42590167..42591767- go_terms:GO:0016758 functional_description:"Galactinol synthase (AHRD V1 ***- C7G304_SOLLC); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00006924g0001.1 protein ; (*GB) gi|225436964|ref|XP_002276672.1| (e_value=2e-30) PREDICTED: putative DUF21 domain-containing protein At1g03270 [Vitis vinifera];; (*SWP) sp|Q9ZVS8|Y1327_ARATH (e_value=8e-30) Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2;; (*TAIR) AT1G03270.1 (e_value=6e-31) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:799191-802436 FORWARD LENGTH=499;; (*ITAG) Solyc09g064870.2.1 (e_value=2e-57) genomic_reference:SL2.40ch09 gene_region:57951952-57962484 transcript_region:SL2.40ch09:57951952..57962484- functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00001494g0002.1 protein ; (*GB) gi|224118424|ref|XP_002317815.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q69NG5|6PGL4_ORYSJ (e_value=2e-38) Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0529100 PE=2 SV=2;; (*TAIR) AT5G24400.1 (e_value=1e-36) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc06g053200.2.1 (e_value=4e-57) genomic_reference:SL2.40ch06 gene_region:32435446-32437176 transcript_region:SL2.40ch06:32435446..32437176- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** B6UAK0_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00011456g0001.1 protein ; (*ITAG) Solyc08g042010.2.1 (e_value=2e-22) genomic_reference:SL2.40ch08 gene_region:28659345-28663693 transcript_region:SL2.40ch08:28659345..28663693+ go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M3X2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00020468g0003.1 protein ; (*GB) gi|224063923|ref|XP_002301303.1| (e_value=2e-12) predicted protein [Populus trichocarpa]; NbC23174049g0001.1 protein ; (*GB) gi|6225542|sp|O82043.1|ILV5_PEA (e_value=7e-28) RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor;; (*SWP) sp|O82043|ILV5_PEA (e_value=2e-29) Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1;; (*TAIR) AT3G58610.3 (e_value=2e-29) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc07g053280.2.1 (e_value=6e-31) genomic_reference:SL2.40ch07 gene_region:59072715-59077834 transcript_region:SL2.40ch07:59072715..59077834- go_terms:GO:0000287,GO:0070402 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D6QSY0_CATRO); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0000287,GO:0070402 NbS00042390g0003.1 protein NbS00031040g0001.1 protein NbS00016411g0007.1 protein ; (*GB) gi|224125918|ref|XP_002329749.1| (e_value=3e-48) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17740.1 (e_value=1e-44) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | chr3:6068003-6072814 REVERSE LENGTH=1149;; (*ITAG) Solyc03g098160.2.1 (e_value=1e-59) genomic_reference:SL2.40ch03 gene_region:53935244-53947764 transcript_region:SL2.40ch03:53935244..53947764+ go_terms:GO:0005975,GO:0005622 functional_description:"Chromosome 14 open reading frame 102 (AHRD V1 *--- Q4G0A7_HUMAN); contains Interpro domain(s) IPR013633 Protein of unknown function DUF1740 "; GO:0005975,GO:0005622 NbS00034624g0001.1 protein ; (*GB) gi|351726840|ref|NP_001237396.1| (e_value=1e-25) uncharacterized protein LOC100499884 [Glycine max];; (*SWP) sp|O65743|RL24_CICAR (e_value=2e-26) 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1;; (*TAIR) AT3G53020.1 (e_value=3e-24) | Symbols: STV1, RPL24B, RPL24 | Ribosomal protein L24e family protein | chr3:19660749-19661912 REVERSE LENGTH=163;; (*ITAG) Solyc10g085480.1.1 (e_value=2e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63963193-63965907 transcript_region:SL2.40ch10:63963193..63965907+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L24 (AHRD V1 ***- B3TM46_ELAGV); contains Interpro domain(s) IPR000988 Ribosomal protein L24e "; GO:0005840 NbC24426830g0001.1 protein ; (*GB) gi|296090211|emb|CBI40030.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54280.2 (e_value=1e-22) | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20104153 FORWARD LENGTH=2129;; (*ITAG) Solyc08g074520.1.1 (e_value=2e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:55785245-55796999 transcript_region:SL2.40ch08:55785245..55796999- go_terms:GO:0005488 functional_description:"TATA-binding protein-associated factor MOT1 (AHRD V1 *--- C1G0V1_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00030956g0001.1 protein ; (*GB) gi|225442351|ref|XP_002276303.1| (e_value=1e-27) PREDICTED: uncharacterized protein At1g51745-like [Vitis vinifera];; (*SWP) sp|P59278|Y1745_ARATH (e_value=2e-18) Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2;; (*TAIR) AT3G21295.1 (e_value=5e-26) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:7489635-7492296 FORWARD LENGTH=645;; (*ITAG) Solyc03g121320.2.1 (e_value=8e-34) genomic_reference:SL2.40ch03 gene_region:63507750-63513367 transcript_region:SL2.40ch03:63507750..63513367+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000313 PWWP "; NbC24812457g0001.1 protein ; (*GB) gi|147864200|emb|CAN83025.1| (e_value=3e-83) hypothetical protein VITISV_039681 [Vitis vinifera];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=1e-80) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT3G56640.1 (e_value=9e-82) | Symbols: SEC15A | exocyst complex component sec15A | chr3:20981964-20984336 FORWARD LENGTH=790;; (*ITAG) Solyc12g096290.1.1 (e_value=1e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63618192-63620489 transcript_region:SL2.40ch12:63618192..63620489+ go_terms:GO:0005975,GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0005975,GO:0000145 NbS00022113g0001.1 protein NbS00045051g0003.1 protein NbS00011570g0002.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=1e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g112320.2.1 (e_value=8e-11) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00025215g0003.1 protein ; (*GB) gi|147805812|emb|CAN60544.1| (e_value=2e-14) hypothetical protein VITISV_006250 [Vitis vinifera];; (*ITAG) Solyc11g065520.1.1 (e_value=2e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00055894g0002.1 protein ; (*GB) gi|334199824|gb|AEG73891.1| (e_value=9e-23) zeta-carotene desaturase [Nicotiana tabacum];; (*SWP) sp|Q9SMJ3|ZDS_CAPAN (e_value=9e-21) Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1;; (*ITAG) Solyc01g097810.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:80276527-80284534 transcript_region:SL2.40ch01:80276527..80284534- go_terms:GO:0055114 functional_description:"Zeta-carotene desaturase"; GO:0055114 NbC23235419g0001.1 protein ; (*GB) gi|4105186|gb|AAD02290.1| (e_value=6e-38) protoporphyrinogen oxidase PX-1 [Nicotiana tabacum];; (*SWP) sp|O24163|PPOC_TOBAC (e_value=1e-38) Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1;; (*TAIR) AT4G01690.2 (e_value=3e-35) | Symbols: PPOX | Flavin containing amine oxidoreductase family | chr4:729929-732309 FORWARD LENGTH=506;; (*ITAG) Solyc01g079090.2.1 (e_value=5e-38) genomic_reference:SL2.40ch01 gene_region:70668181-70673636 transcript_region:SL2.40ch01:70668181..70673636+ go_terms:GO:0055114 functional_description:"Protoporphyrinogen oxidase (AHRD V1 ***- O64384_SOLTU); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00033588g0002.1 protein NbC23641021g0001.1 protein ; (*GB) gi|357436069|ref|XP_003588310.1| (e_value=2e-18) hypothetical protein MTR_1g005810 [Medicago truncatula];; (*ITAG) Solyc07g017930.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00001205g0001.1 protein NbS00001353g0002.1 protein NbS00018657g0003.1 protein NbS00044493g0001.1 protein NbS00026249g0002.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=3e-37) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|Q1RJT3|ODP2_RICBR (e_value=4e-17) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1;; (*TAIR) AT1G34430.1 (e_value=7e-35) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=1e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00059385g0001.1 protein NbS00004714g0002.1 protein NbS00024829g0004.1 protein NbS00059547g0002.1 protein NbS00059547g0003.1 protein NbS00012559g0001.1 protein ; (*ITAG) ATMG01320.1 (e_value=1e-13) | Symbols: NAD2B, NAD2.2, NAD2 | NADH dehydrogenase 2B | chrM:327890-333105 REVERSE LENGTH=499;; (*ITAG) Solyc00g013130.2.1 (e_value=1e-13) genomic_reference:SL2.40ch00 gene_region:10673286-10677092 transcript_region:SL2.40ch00:10673286..10677092- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit N (AHRD V1 ***- Q7CZK9_AGRT5); contains Interpro domain(s) IPR001750 NADH:ubiquinone/plastoquinone oxidoreductase "; GO:0055114 NbS00012016g0004.1 protein NbS00019529g0103.1 protein NbS00038178g0002.1 protein NbS00038178g0003.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=1e-12) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbS00004712g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-33) hypothetical protein [Cucumis melo subsp. melo]; NbS00035075g0001.1 protein NbS00035075g0002.1 protein NbS00005236g0001.1 protein ; (*GB) gi|225426989|ref|XP_002270066.1| (e_value=5e-37) PREDICTED: chaperone protein dnaJ 13 [Vitis vinifera];; (*SWP) sp|Q39079|DNJ13_ARATH (e_value=1e-33) Chaperone protein dnaJ 13 OS=Arabidopsis thaliana GN=ATJ13 PE=1 SV=2;; (*TAIR) AT2G35720.1 (e_value=9e-35) | Symbols: OWL1 | DNAJ heat shock N-terminal domain-containing protein | chr2:15016883-15019866 FORWARD LENGTH=538;; (*ITAG) Solyc08g078660.2.1 (e_value=6e-44) genomic_reference:SL2.40ch08 gene_region:59591348-59605081 transcript_region:SL2.40ch08:59591348..59605081+ go_terms:GO:0005515 functional_description:"Chaperone protein dnaJ 13 (AHRD V1 ***- B6T7S1_MAIZE); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0005515 NbS00045069g0001.1 protein NbS00055913g0002.1 protein ; (*GB) gi|149928411|ref|ZP_01916649.1| (e_value=1e-76) flagellin-like protein [Limnobacter sp. MED105];; (*SWP) sp|P53606|FLA_LEGMI (e_value=1e-35) Flagellin OS=Legionella micdadei GN=fla PE=3 SV=1; NbS00003452g0001.1 protein NbS00005313g0001.1 protein ; (*GB) gi|356525831|ref|XP_003531525.1| (e_value=7e-98) PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like [Glycine max];; (*SWP) sp|Q9FPS2|UBP25_ARATH (e_value=8e-93) Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1;; (*TAIR) AT3G14400.1 (e_value=6e-94) | Symbols: UBP25 | ubiquitin-specific protease 25 | chr3:4811953-4815210 REVERSE LENGTH=661;; (*ITAG) Solyc07g056520.2.1 (e_value=1e-115) genomic_reference:SL2.40ch07 gene_region:61634585-61644861 transcript_region:SL2.40ch07:61634585..61644861- go_terms:GO:0004843,GO:0005515 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9SU52_RICCO); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0005515 NbS00006598g0001.1 protein NbS00056736g0002.1 protein NbS00012830g0001.1 protein NbS00003749g0003.1 protein NbS00026588g0001.1 protein ; (*GB) gi|224074667|ref|XP_002304415.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79570.1 (e_value=6e-38) | Symbols: | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain | chr1:29932856-29937540 REVERSE LENGTH=1248;; (*ITAG) Solyc02g031860.2.1 (e_value=1e-90) genomic_reference:SL2.40ch02 gene_region:17793182-17800827 transcript_region:SL2.40ch02:17793182..17800827- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00037654g0001.1 protein ; (*GB) gi|359487804|ref|XP_002280635.2| (e_value=7e-24) PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera];; (*TAIR) AT1G55040.1 (e_value=2e-18) | Symbols: | zinc finger (Ran-binding) family protein | chr1:20534895-20538901 FORWARD LENGTH=849;; (*ITAG) Solyc01g099230.2.1 (e_value=3e-52) genomic_reference:SL2.40ch01 gene_region:81291134-81296687 transcript_region:SL2.40ch01:81291134..81296687+ go_terms:GO:0005488 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 *--- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00037654g0002.1 protein NbS00005650g0001.1 protein NbC26032575g0001.1 protein ; (*GB) gi|225470788|ref|XP_002269787.1| (e_value=8e-99) PREDICTED: probable ATP-dependent RNA helicase DHX36 [Vitis vinifera];; (*TAIR) AT5G04895.1 (e_value=8e-96) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=8e-118) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00035205g0001.1 protein NbS00055699g0001.1 protein NbC23493851g0001.1 protein ; (*SWP) sp|Q6DBN1|Y4845_ARATH (e_value=2e-14) BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1;; (*TAIR) AT4G08455.1 (e_value=2e-15) | Symbols: | BTB/POZ domain-containing protein | chr4:5375891-5376922 FORWARD LENGTH=243;; (*ITAG) Solyc02g032510.2.1 (e_value=2e-16) genomic_reference:SL2.40ch02 gene_region:19242941-19247560 transcript_region:SL2.40ch02:19242941..19247560- go_terms:GO:0005515 functional_description:"Kelch-like protein (AHRD V1 ***- A7XCS9_9POXV); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00018914g0006.1 protein NbC25110210g0001.1 protein ; (*GB) gi|49523569|emb|CAF18246.1| (e_value=5e-31) STY-L protein [Antirrhinum majus];; (*TAIR) AT2G32700.7 (e_value=2e-18) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=806;; (*ITAG) Solyc06g083460.2.1 (e_value=4e-39) genomic_reference:SL2.40ch06 gene_region:45145760-45153363 transcript_region:SL2.40ch06:45145760..45153363- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; NbS00007328g0002.1 protein NbS00019002g0002.1 protein NbS00012209g0001.1 protein NbS00010044g0001.1 protein ; (*GB) gi|302142908|emb|CBI20203.3| (e_value=5e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L7M1|B3GTE_ARATH (e_value=1e-68) Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1;; (*TAIR) AT1G53290.1 (e_value=1e-69) | Symbols: | Galactosyltransferase family protein | chr1:19871353-19873251 FORWARD LENGTH=345;; (*ITAG) Solyc07g062590.2.1 (e_value=2e-78) genomic_reference:SL2.40ch07 gene_region:62505718-62512422 transcript_region:SL2.40ch07:62505718..62512422- go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00010044g0002.1 protein NbS00016278g0104.1 protein NbS00019248g0004.1 protein NbS00001148g0001.1 protein NbS00014479g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=8e-28) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=3e-18) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00003438g0001.1 protein NbS00003755g0002.1 protein NbS00003755g0003.1 protein NbS00003755g0101.1 protein NbS00003755g0103.1 protein NbS00009083g0004.1 protein NbS00007577g0004.1 protein NbS00006747g0001.1 protein NbS00004507g0104.1 protein NbS00034338g0001.1 protein ; (*GB) gi|147852955|emb|CAN81271.1| (e_value=4e-85) hypothetical protein VITISV_006146 [Vitis vinifera];; (*SWP) sp|O75629|CREG1_HUMAN (e_value=8e-29) Protein CREG1 OS=Homo sapiens GN=CREG1 PE=1 SV=1;; (*TAIR) AT2G04690.2 (e_value=1e-74) | Symbols: | Pyridoxamine 5'-phosphate oxidase family protein | chr2:1644628-1646035 FORWARD LENGTH=203;; (*ITAG) Solyc02g087250.2.1 (e_value=2e-104) genomic_reference:SL2.40ch02 gene_region:44273725-44285278 transcript_region:SL2.40ch02:44273725..44285278- go_terms:GO:0010181,GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK63_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0010181,GO:0003723 NbS00005689g0001.1 protein NbS00005689g0005.1 protein NbS00003237g0001.1 protein NbS00034433g0001.1 protein NbS00003304g0106.1 protein NbC23859219g0001.1 protein ; (*GB) gi|297743863|emb|CBI36833.3| (e_value=4e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|O81283|TC159_ARATH (e_value=5e-24) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=4e-25) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc09g074940.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62229782-62233993 transcript_region:SL2.40ch09:62229782..62233993- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *-*- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00033980g0001.1 protein ; (*GB) gi|356530681|ref|XP_003533909.1| (e_value=5e-25) PREDICTED: uncharacterized protein LOC100819935 [Glycine max];; (*TAIR) AT2G41945.1 (e_value=6e-26) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:17511071-17512898 REVERSE LENGTH=158;; (*ITAG) Solyc09g065930.2.1 (e_value=8e-29) genomic_reference:SL2.40ch09 gene_region:59812505-59816902 transcript_region:SL2.40ch09:59812505..59816902+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012952g0002.1 protein NbS00004304g0001.1 protein NbS00058304g0001.1 protein ; (*ITAG) Solyc07g041820.1.1 (e_value=3e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51486981-51490841 transcript_region:SL2.40ch07:51486981..51490841- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00022563g0001.1 protein ; (*GB) gi|1762130|gb|AAB39827.1| (e_value=2e-58) chaperonin-60 beta subunit [Solanum tuberosum];; (*SWP) sp|Q9LJE4|CPNB2_ARATH (e_value=9e-60) Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1;; (*TAIR) AT3G13470.1 (e_value=7e-61) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:4389685-4392624 FORWARD LENGTH=596;; (*ITAG) Solyc01g028810.2.1 (e_value=3e-61) genomic_reference:SL2.40ch01 gene_region:33327242-33332361 transcript_region:SL2.40ch01:33327242..33332361- go_terms:GO:0044267,GO:0005737 functional_description:"chaperonin (AHRD V1 ***- B4VMY1_9CYAN); contains Interpro domain(s) IPR001844 Chaperonin Cpn60 "; GO:0044267,GO:0005737 NbS00030461g0003.1 protein ; (*GB) gi|148923083|gb|ABR18799.1| (e_value=2e-139) brassinosteroid insensitive 1 [Nicotiana tabacum];; (*SWP) sp|Q8L899|BRI1_SOLPE (e_value=7e-128) Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1;; (*TAIR) AT4G39400.1 (e_value=4e-59) | Symbols: BRI1, CBB2, DWF2, BIN1, ATBRI1 | Leucine-rich receptor-like protein kinase family protein | chr4:18324826-18328416 FORWARD LENGTH=1196;; (*ITAG) Solyc04g051510.1.1 (e_value=1e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49870634-49874257 transcript_region:SL2.40ch04:49870634..49874257+ go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbC23519462g0001.1 protein ; (*GB) gi|224133272|ref|XP_002321526.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17850.1 (e_value=3e-19) | Symbols: | Protein kinase superfamily protein | chr3:6109854-6116245 REVERSE LENGTH=1296;; (*ITAG) Solyc03g118530.2.1 (e_value=1e-24) genomic_reference:SL2.40ch03 gene_region:61454465-61471971 transcript_region:SL2.40ch03:61454465..61471971- go_terms:GO:0006468 functional_description:"Protein serine/threonine kinase (AHRD V1 *-*- D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012605g0001.1 protein NbS00038597g0001.1 protein ; (*GB) gi|359478513|ref|XP_002277533.2| (e_value=2e-154) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=8e-90) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=6e-91) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=1e-85) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00038597g0002.1 protein ; (*GB) gi|359478513|ref|XP_002277533.2| (e_value=1e-72) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=5e-32) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=4e-33) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g009240.2.1 (e_value=1e-34) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbC23135165g0001.1 protein ; (*ITAG) Solyc11g013000.1.1 (e_value=4e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5850497-5854023 transcript_region:SL2.40ch11:5850497..5854023+ go_terms:GO:0016021 functional_description:"Transmembrane emp24 domain-containing protein 10 (AHRD V1 ***- B6SSF8_MAIZE); contains Interpro domain(s) IPR000348 emp24/gp25L/p24 "; GO:0016021 NbS00005161g0002.1 protein NbS00047090g0001.1 protein NbC23477418g0001.1 protein ; (*GB) gi|374095605|gb|AEY85030.1| (e_value=4e-29) putative 5-oxoprolinase [Camellia sinensis];; (*SWP) sp|Q9FIZ7|OPLA_ARATH (e_value=1e-28) 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1;; (*TAIR) AT5G37830.1 (e_value=8e-30) | Symbols: OXP1 | oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266;; (*ITAG) Solyc09g010560.1.1 (e_value=4e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3920997-3924803 transcript_region:SL2.40ch09:3920997..3924803- go_terms:GO:0017168 functional_description:"5-oxoprolinase (ATP-hydrolyzing) (AHRD V1 **** Q1JWC8_DESAC); contains Interpro domain(s) IPR003692 Hydantoinase B/oxoprolinase "; GO:0017168 NbS00008309g0103.1 protein NbC23849928g0001.1 protein ; (*ITAG) Solyc11g042990.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00015034g0002.1 protein NbS00015034g0004.1 protein ; (*GB) gi|224128808|ref|XP_002328972.1| (e_value=2e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SWF9|ZFNL_PEA (e_value=7e-26) Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G02830.1 (e_value=2e-23) | Symbols: ZFN1 | zinc finger protein 1 | chr3:614075-615916 FORWARD LENGTH=397;; (*ITAG) Solyc11g008900.1.1 (e_value=8e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3068520-3076321 transcript_region:SL2.40ch11:3068520..3076321+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00014119g0002.1 protein NbS00033140g0002.1 protein NbS00002514g0101.1 protein NbS00022014g0001.1 protein NbS00005261g0001.1 protein NbS00005261g0002.1 protein NbS00021081g0002.1 protein NbS00021081g0003.1 protein NbS00021081g0004.1 protein NbS00000548g0002.1 protein NbS00000349g0001.1 protein NbS00019506g0005.1 protein NbS00045471g0001.1 protein ; (*GB) gi|225451445|ref|XP_002269795.1| (e_value=4e-20) PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera];; (*SWP) sp|P92792|TOM20_SOLTU (e_value=1e-16) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=1e-16) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g068130.2.1 (e_value=2e-18) genomic_reference:SL2.40ch02 gene_region:32744250-32750308 transcript_region:SL2.40ch02:32744250..32750308+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbC23570160g0001.1 protein ; (*ITAG) Solyc04g071120.2.1 (e_value=3e-14) genomic_reference:SL2.40ch04 gene_region:55618968-55632414 transcript_region:SL2.40ch04:55618968..55632414- go_terms:GO:0004712 functional_description:"Serine/threonine/tyrosine kinase (AHRD V1 *-** Q9AWA6_ARAHY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0004712 NbS00003920g0001.1 protein NbS00006628g0001.1 protein NbC25665342g0001.1 protein ; (*ITAG) Solyc03g121760.2.1 (e_value=6e-15) genomic_reference:SL2.40ch03 gene_region:63883128-63885625 transcript_region:SL2.40ch03:63883128..63885625- go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00032208g0004.1 protein ; (*GB) gi|296085801|emb|CBI31125.3| (e_value=9e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24710.1 (e_value=2e-30) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00032208g0005.1 protein ; (*GB) gi|224090627|ref|XP_002309040.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24710.1 (e_value=4e-35) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:8459148-8467920 REVERSE LENGTH=1377;; (*ITAG) Solyc01g102510.2.1 (e_value=4e-41) genomic_reference:SL2.40ch01 gene_region:83056665-83068391 transcript_region:SL2.40ch01:83056665..83068391- go_terms:GO:0031177 functional_description:"Genomic DNA chromosome 5 P1 clone MXC17 (AHRD V1 *--- Q9FIR4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0031177 NbS00002231g0002.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=7e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00012597g0001.1 protein NbS00009622g0004.1 protein NbS00003142g0002.1 protein NbS00002575g0001.1 protein NbS00001602g0102.1 protein NbS00023588g0001.1 protein NbS00004074g0001.1 protein ; (*GB) gi|78191406|gb|ABB29924.1| (e_value=5e-32) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=3e-32) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT2G18110.1 (e_value=5e-30) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr2:7872636-7873713 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00048725g0001.1 protein NbS00025165g0003.1 protein ; (*ITAG) Solyc11g073230.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023603g0001.1 protein NbS00023455g0002.1 protein NbS00014854g0001.1 protein NbS00032831g0001.1 protein NbS00032831g0004.1 protein NbS00008801g0001.1 protein ; (*GB) gi|359483673|ref|XP_003632998.1| (e_value=7e-32) PREDICTED: BES1/BZR1 homolog protein 1-like [Vitis vinifera];; (*SWP) sp|O80831|BAM7_ARATH (e_value=6e-18) Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2;; (*TAIR) AT2G45880.1 (e_value=5e-19) | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878674-18881824 REVERSE LENGTH=691;; (*ITAG) Solyc01g094580.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:77758296-77767159 transcript_region:SL2.40ch01:77758296..77767159- go_terms:GO:0016161 functional_description:"Beta-amylase 9 (AHRD V1 **** D7M5N4_ARALY); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00010536g0001.1 protein NbS00001525g0104.1 protein NbS00001525g0108.1 protein NbS00012071g0003.1 protein ; (*GB) gi|356550795|ref|XP_003543769.1| (e_value=4e-18) PREDICTED: ABC transporter B family member 19-like [Glycine max];; (*SWP) sp|Q9LJX0|AB19B_ARATH (e_value=2e-16) ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1;; (*TAIR) AT3G28860.1 (e_value=2e-17) | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252;; (*ITAG) Solyc02g087870.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:44715333-44723038 transcript_region:SL2.40ch02:44715333..44723038- go_terms:GO:0010329,GO:0008559 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0010329,GO:0008559 NbS00012071g0004.1 protein NbS00001143g0201.1 protein NbS00011433g0002.1 protein NbS00011433g0004.1 protein NbC25811466g0001.1 protein NbS00001985g0001.1 protein NbS00021567g0001.1 protein NbS00001413g0005.1 protein NbC26293446g0001.1 protein NbS00056422g0001.1 protein NbS00034482g0001.1 protein ; (*ITAG) Solyc03g117480.2.1 (e_value=2e-13) genomic_reference:SL2.40ch03 gene_region:60677249-60682108 transcript_region:SL2.40ch03:60677249..60682108- go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (AHRD V1 **** C7HW54_9FIRM); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00051956g0003.1 protein ; (*ITAG) Solyc02g032820.2.1 (e_value=2e-12) genomic_reference:SL2.40ch02 gene_region:20070295-20078341 transcript_region:SL2.40ch02:20070295..20078341+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 ***- Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00014573g0001.1 protein ; (*GB) gi|297739380|emb|CBI29396.3| (e_value=3e-130) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G50590.1 (e_value=1e-123) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18771292-18779220 FORWARD LENGTH=1614;; (*ITAG) Solyc02g090570.2.1 (e_value=1e-142) genomic_reference:SL2.40ch02 gene_region:46681394-46702041 transcript_region:SL2.40ch02:46681394..46702041+ functional_description:"Transducin family protein (AHRD V1 ***- D7LTG4_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00003945g0001.1 protein NbS00006116g0003.1 protein ; (*GB) gi|356495317|ref|XP_003516525.1| (e_value=2e-60) PREDICTED: protein RKD5-like [Glycine max];; (*SWP) sp|O81791|RKD5_ARATH (e_value=3e-31) Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=2 SV=1;; (*TAIR) AT4G35590.1 (e_value=3e-32) | Symbols: | RWP-RK domain-containing protein | chr4:16892909-16894865 FORWARD LENGTH=370;; (*ITAG) Solyc03g083040.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46419062-46421169 transcript_region:SL2.40ch03:46419062..46421169+ functional_description:"RWP-RK domain-containing transcription factor (AHRD V1 *-*- D8TJX2_VOLCA); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; NbS00004774g0003.1 protein NbS00011817g0003.1 protein NbS00011817g0004.1 protein NbS00019707g0001.1 protein NbS00005590g0101.1 protein NbS00015498g0002.1 protein NbS00018439g0001.1 protein NbS00019115g0002.1 protein NbC23374024g0001.1 protein ; (*ITAG) Solyc09g065280.2.1 (e_value=1e-18) genomic_reference:SL2.40ch09 gene_region:58944289-58948110 transcript_region:SL2.40ch09:58944289..58948110+ go_terms:GO:0005515,GO:0019870 functional_description:"Pre-mRNA-splicing factor 18 (AHRD V1 ***- C1BJD5_OSMMO); contains Interpro domain(s) IPR004098 Prp18 "; GO:0005515,GO:0019870 NbS00051219g0001.1 protein NbS00044120g0001.1 protein NbC24621828g0001.1 protein ; (*GB) gi|357628615|gb|EHJ77887.1| (e_value=8e-31) putative heterochromatin protein isoform 2 [Danaus plexippus];; (*SWP) sp|Q24208|IF2G_DROME (e_value=7e-31) Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1;; (*TAIR) AT1G04170.1 (e_value=4e-31) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=1e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00007400g0001.1 protein ; (*GB) gi|339717983|gb|AEJ88779.1| (e_value=4e-38) cutin-deficient 1 protein [Solanum lycopersicum];; (*SWP) sp|Q8LB81|GDL79_ARATH (e_value=4e-39) GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1;; (*TAIR) AT5G33370.2 (e_value=2e-40) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602864-12604670 REVERSE LENGTH=330;; (*ITAG) Solyc04g050570.2.1 (e_value=7e-49) genomic_reference:SL2.40ch04 gene_region:46740870-46745823 transcript_region:SL2.40ch04:46740870..46745823- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00045067g0001.1 protein NbC24575021g0001.1 protein ; (*GB) gi|255567632|ref|XP_002524795.1| (e_value=5e-62) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G48060.1 (e_value=2e-61) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | chr2:19651560-19662386 REVERSE LENGTH=2462;; (*ITAG) Solyc09g074110.2.1 (e_value=2e-79) genomic_reference:SL2.40ch09 gene_region:61291740-61320947 transcript_region:SL2.40ch09:61291740..61320947+ functional_description:"AGAP009276-PA (Fragment) (AHRD V1 *--- Q7PVH5_ANOGA)"; NbS00035377g0005.1 protein NbS00026769g0001.1 protein NbS00006508g0003.1 protein NbS00006508g0004.1 protein NbS00006508g0009.1 protein NbS00043020g0004.1 protein NbC24541842g0001.1 protein ; (*GB) gi|147798057|emb|CAN60703.1| (e_value=8e-79) hypothetical protein VITISV_003522 [Vitis vinifera];; (*SWP) sp|P38861|NMD3_YEAST (e_value=1e-23) 60S ribosomal export protein NMD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD3 PE=1 SV=3;; (*TAIR) AT2G03820.1 (e_value=4e-54) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc06g053800.1.1 (e_value=3e-89) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33148340-33149857 transcript_region:SL2.40ch06:33148340..33149857- go_terms:GO:0005515,GO:0043023 functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; GO:0005515,GO:0043023 NbS00003693g0001.1 protein NbS00011118g0003.1 protein NbS00040912g0001.1 protein NbS00012535g0102.1 protein NbS00012535g0104.1 protein NbS00021843g0004.1 protein ; (*GB) gi|147768848|emb|CAN78132.1| (e_value=1e-40) hypothetical protein VITISV_000333 [Vitis vinifera];; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=3e-36) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=3e-37) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc06g069670.2.1 (e_value=6e-38) genomic_reference:SL2.40ch06 gene_region:39776906-39790412 transcript_region:SL2.40ch06:39776906..39790412+ go_terms:GO:0030036 functional_description:"Formin 2A (AHRD V1 *-*- C7BGM8_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00004966g0003.1 protein NbS00052110g0001.1 protein NbC24725892g0001.1 protein ; (*GB) gi|222613313|gb|EEE51445.1| (e_value=5e-29) hypothetical protein OsJ_32540 [Oryza sativa Japonica Group];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=9e-17) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=7e-28) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=4e-32) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00001298g0001.1 protein ; (*ITAG) Solyc12g036230.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:29890833-29892790 transcript_region:SL2.40ch12:29890833..29892790- functional_description:"Histidine-containing phosphotransfer protein (AHRD V1 ***- Q6VAK3_ORYSJ)"; NbS00002554g0002.1 protein ; (*GB) gi|105923235|gb|ABF81465.1| (e_value=1e-54) TIR-NBS-LRR type disease resistance protein [Populus trichocarpa];; (*SWP) sp|Q40392|TMVRN_NICGU (e_value=2e-18) TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1;; (*TAIR) AT5G36930.2 (e_value=4e-34) | Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:14567771-14571916 REVERSE LENGTH=1191;; (*ITAG) Solyc09g007710.2.1 (e_value=4e-44) genomic_reference:SL2.40ch09 gene_region:1257638-1262613 transcript_region:SL2.40ch09:1257638..1262613+ go_terms:GO:0006952,GO:0005515,GO:0031224,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0006952,GO:0005515,GO:0031224,GO:0006915 NbC26231597g0001.1 protein ; (*GB) gi|255579733|ref|XP_002530705.1| (e_value=7e-35) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G58000.1 (e_value=3e-23) | Symbols: | VQ motif-containing protein | chr3:21474950-21475477 FORWARD LENGTH=175; NbS00013694g0001.1 protein NbS00013694g0002.1 protein ; (*GB) gi|147787483|emb|CAN77813.1| (e_value=6e-17) hypothetical protein VITISV_028341 [Vitis vinifera]; NbS00033291g0001.1 protein NbS00006676g0001.1 protein NbC23200356g0001.1 protein ; (*GB) gi|7673355|gb|AAF66823.1|AF190655_1 (e_value=3e-24) poly(A)-binding protein [Nicotiana tabacum];; (*TAIR) AT1G49760.2 (e_value=4e-17) | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671;; (*ITAG) Solyc01g107870.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:87021438-87028206 transcript_region:SL2.40ch01:87021438..87028206+ go_terms:GO:0008143 functional_description:"Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143 NbS00000546g0003.1 protein NbS00003926g0003.1 protein NbS00002994g0002.1 protein NbS00013456g0003.1 protein ; (*ITAG) Solyc10g046920.1.1 (e_value=9e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:33593558-33594361 transcript_region:SL2.40ch10:33593558..33594361+ functional_description:"Unknown Protein (AHRD V1)"; NbC25218513g0001.1 protein NbS00000514g0102.1 protein NbC25936038g0001.1 protein ; (*GB) gi|255565897|ref|XP_002523937.1| (e_value=8e-76) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*TAIR) AT5G04885.1 (e_value=6e-68) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc11g071650.1.1 (e_value=5e-80) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52146575-52151986 transcript_region:SL2.40ch11:52146575..52151986+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00041902g0001.1 protein NbC24316409g0001.1 protein ; (*ITAG) Solyc11g010160.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00001584g0002.1 protein ; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=1e-42) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=2e-41) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=1e-42) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=1e-50) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00014260g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g037900.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:41420885-41422318 transcript_region:SL2.40ch07:41420885..41422318+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00029558g0003.1 protein NbS00001319g0001.1 protein NbS00008013g0002.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=1e-25) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=2e-24) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=5e-36) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00007127g0001.1 protein NbS00007127g0101.1 protein NbS00007127g0102.1 protein NbC23654983g0001.1 protein ; (*GB) gi|297833898|ref|XP_002884831.1| (e_value=5e-30) hypothetical protein ARALYDRAFT_478454 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=2e-31) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=1e-32) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc05g052510.2.1 (e_value=3e-32) genomic_reference:SL2.40ch05 gene_region:61866407-61885279 transcript_region:SL2.40ch05:61866407..61885279- go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00041954g0003.1 protein NbS00045271g0001.1 protein NbS00008375g0002.1 protein NbS00008375g0005.1 protein NbS00008375g0008.1 protein NbS00025276g0001.1 protein NbS00007613g0002.1 protein NbS00018757g0002.1 protein ; (*GB) gi|255545130|ref|XP_002513626.1| (e_value=2e-28) conserved hypothetical protein [Ricinus communis]; NbS00045528g0001.1 protein ; (*GB) gi|115469338|ref|NP_001058268.1| (e_value=6e-23) Os06g0660200 [Oryza sativa Japonica Group];; (*SWP) sp|Q651V6|PIN2_ORYSJ (e_value=2e-24) Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1;; (*TAIR) AT5G57090.1 (e_value=3e-24) | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | Auxin efflux carrier family protein | chr5:23100765-23104456 FORWARD LENGTH=647;; (*ITAG) Solyc07g006900.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1755020-1757837 transcript_region:SL2.40ch07:1755020..1757837+ go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier protein (AHRD V1 **** Q84YG8_MEDTR); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00000571g0003.1 protein ; (*GB) gi|351722239|ref|NP_001237237.1| (e_value=1e-25) uncharacterized protein LOC100306593 [Glycine max]; NbS00017927g0001.1 protein NbS00001276g0001.1 protein NbS00024439g0003.1 protein ; (*GB) gi|57013971|ref|YP_173443.1| (e_value=2e-37) hypothetical protein NitaMp105 [Nicotiana tabacum]; NbC23631737g0001.1 protein ; (*GB) gi|357149204|ref|XP_003575035.1| (e_value=4e-29) PREDICTED: chaperone protein ClpC1, chloroplastic-like [Brachypodium distachyon];; (*SWP) sp|P35100|CLPC_PEA (e_value=1e-30) Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G50920.1 (e_value=1e-31) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=8e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00017605g0001.1 protein NbC25710986g0001.1 protein ; (*GB) gi|359489272|ref|XP_002274161.2| (e_value=9e-18) PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Vitis vinifera];; (*TAIR) AT2G44980.2 (e_value=2e-17) | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein | chr2:18552343-18556669 REVERSE LENGTH=877;; (*ITAG) Solyc01g090640.2.1 (e_value=6e-30) genomic_reference:SL2.40ch01 gene_region:76046411-76049387 transcript_region:SL2.40ch01:76046411..76049387- functional_description:"Chromodomain helicase DNA binding protein 1-like (Predicted) (AHRD V1 **-- D3ZRY1_RAT)"; NbS00011178g0001.1 protein NbS00042231g0001.1 protein ; (*GB) gi|224064283|ref|XP_002301415.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=1e-14) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=1e-15) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00007990g0003.1 protein NbS00003562g0107.1 protein NbS00032119g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=9e-15) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00002577g0001.1 protein ; (*ITAG) Solyc05g024290.2.1 (e_value=3e-19) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbC23663066g0001.1 protein ; (*GB) gi|357481455|ref|XP_003611013.1| (e_value=4e-34) Calcium-binding mitochondrial carrier protein SCaMC-1-B [Medicago truncatula];; (*TAIR) AT4G01100.1 (e_value=1e-31) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=352;; (*ITAG) Solyc08g082020.2.1 (e_value=2e-39) genomic_reference:SL2.40ch08 gene_region:62100535-62107680 transcript_region:SL2.40ch08:62100535..62107680- go_terms:GO:0015228 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0015228 NbS00028457g0001.1 protein NbC24299909g0001.1 protein ; (*GB) gi|255572207|ref|XP_002527043.1| (e_value=3e-33) Ran GTPase binding protein, putative [Ricinus communis];; (*TAIR) AT5G19420.2 (e_value=2e-33) | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr5:6547945-6552981 REVERSE LENGTH=1139;; (*ITAG) Solyc11g065120.1.1 (e_value=7e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47535935-47556450 transcript_region:SL2.40ch11:47535935..47556450+ go_terms:GO:0008270 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0008270 NbC24204905g0001.1 protein ; (*GB) gi|149926218|ref|ZP_01914480.1| (e_value=8e-66) hypothetical protein LMED105_01758 [Limnobacter sp. MED105]; NbC26154970g0002.1 protein ; (*GB) gi|374095611|gb|AEY85033.1| (e_value=5e-65) xanthine dehydrogenase [Camellia sinensis];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=7e-60) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=5e-61) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=6e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00012001g0002.1 protein NbS00023532g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-26) RNase H family protein [Solanum demissum]; NbS00020274g0001.1 protein NbS00021427g0001.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00048838g0002.1 protein ; (*GB) gi|255555747|ref|XP_002518909.1| (e_value=4e-23) alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis];; (*SWP) sp|Q40863|EMB8_PICGL (e_value=6e-15) Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1;; (*TAIR) AT3G50790.1 (e_value=4e-18) | Symbols: | esterase/lipase/thioesterase family protein | chr3:18880074-18881940 REVERSE LENGTH=408;; (*ITAG) Solyc08g083140.2.1 (e_value=2e-23) genomic_reference:SL2.40ch08 gene_region:62847856-62854865 transcript_region:SL2.40ch08:62847856..62854865+ go_terms:GO:0042802 functional_description:"Alpha/beta hydrolase fold-1 domain-containing protein (AHRD V1 **-- D3BTR9_POLPA); contains Interpro domain(s) IPR012020 AB-hydrolase YheT, putative "; GO:0042802 NbS00057935g0001.1 protein NbC24606714g0001.1 protein NbS00046718g0001.1 protein NbS00046718g0002.1 protein NbS00015051g0001.1 protein NbS00052265g0001.1 protein ; (*ITAG) Solyc07g005570.2.1 (e_value=3e-39) genomic_reference:SL2.40ch07 gene_region:451950-457148 transcript_region:SL2.40ch07:451950..457148- functional_description:"APO protein 2, chloroplastic (AHRD V1 ***- APO2_ARATH); contains Interpro domain(s) IPR008512 Protein of unknown function DUF794, plant "; NbS00011512g0001.1 protein NbS00036392g0001.1 protein NbS00032334g0001.1 protein ; (*ITAG) Solyc01g090000.1.1 (e_value=8e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:75475011-75476777 transcript_region:SL2.40ch01:75475011..75476777- go_terms:GO:0005515 functional_description:"Bax inhibitor (AHRD V1 ***- Q6U1L7_SOLLC)"; GO:0005515 NbS00001412g0003.1 protein ; (*ITAG) Solyc01g103660.2.1 (e_value=3e-23) genomic_reference:SL2.40ch01 gene_region:83970532-83977332 transcript_region:SL2.40ch01:83970532..83977332+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold (AHRD V1 *--- B0KN71_PSEPG)"; GO:0003824 NbS00007568g0001.1 protein NbS00007568g0002.1 protein NbS00011428g0002.1 protein ; (*GB) gi|6685068|gb|AAF23770.1|AF205858_1 (e_value=2e-27) FtsZ-like protein 2 [Nicotiana tabacum];; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=1e-28) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=9e-30) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=8e-30) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00000153g0002.1 protein ; (*GB) gi|357158391|ref|XP_003578113.1| (e_value=4e-44) PREDICTED: uncharacterized protein LOC100836082 [Brachypodium distachyon];; (*TAIR) AT1G74640.1 (e_value=7e-40) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370;; (*ITAG) Solyc03g116110.2.1 (e_value=7e-48) genomic_reference:SL2.40ch03 gene_region:59675160-59679638 transcript_region:SL2.40ch03:59675160..59679638- functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 ***- B2J569_NOSP7)"; NbS00037836g0003.1 protein NbC23510543g0001.1 protein ; (*ITAG) Solyc11g008470.1.1 (e_value=7e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2660109-2664044 transcript_region:SL2.40ch11:2660109..2664044+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- B0WPY3_CULQU); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00004524g0001.1 protein NbS00037047g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-20) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g037900.1.1 (e_value=2e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:41420885-41422318 transcript_region:SL2.40ch07:41420885..41422318+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00000805g0202.1 protein NbS00046081g0001.1 protein NbS00017399g0006.1 protein NbC25787138g0001.1 protein ; (*GB) gi|225456018|ref|XP_002279561.1| (e_value=6e-112) PREDICTED: uncharacterized protein LOC100256054 [Vitis vinifera];; (*TAIR) AT3G18240.2 (e_value=3e-105) | Symbols: | Ribosomal protein S24/S35, mitochondrial | chr3:6255810-6257695 FORWARD LENGTH=419;; (*ITAG) Solyc03g119170.2.1 (e_value=8e-128) genomic_reference:SL2.40ch03 gene_region:61905241-61909056 transcript_region:SL2.40ch03:61905241..61909056+ functional_description:"AGL140Cp (AHRD V1 *-*- Q750S9_ASHGO); contains Interpro domain(s) IPR019349 Ribosomal protein S24/S35, mitochondrial "; NbS00002916g0001.1 protein NbC24087050g0001.1 protein ; (*GB) gi|298205222|emb|CBI17281.3| (e_value=9e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G30990.1 (e_value=4e-25) | Symbols: | ARM repeat superfamily protein | chr4:15084456-15097860 FORWARD LENGTH=2599;; (*ITAG) Solyc09g092240.2.1 (e_value=3e-37) genomic_reference:SL2.40ch09 gene_region:66714632-66734123 transcript_region:SL2.40ch09:66714632..66734123- go_terms:GO:0005488 functional_description:"Small subunit processome component 20 homolog (AHRD V1 **-- UTP20_MOUSE); contains Interpro domain(s) IPR011430 Down-regulated in metastasis "; GO:0005488 NbS00019788g0002.1 protein NbS00006565g0001.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=1e-14) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=3e-13) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00027361g0001.1 protein NbS00060402g0001.1 protein ; (*GB) gi|225452909|ref|XP_002278808.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100245770 [Vitis vinifera];; (*TAIR) AT3G29180.2 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF1336) | chr3:11149073-11151322 FORWARD LENGTH=513;; (*ITAG) Solyc03g065200.2.1 (e_value=2e-114) genomic_reference:SL2.40ch03 gene_region:37714532-37720423 transcript_region:SL2.40ch03:37714532..37720423+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 *--- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00023953g0001.1 protein NbS00050344g0001.1 protein NbS00027353g0001.1 protein NbS00006449g0001.1 protein NbS00039246g0001.1 protein NbS00006687g0002.1 protein NbS00042010g0002.1 protein ; (*GB) gi|224115256|ref|XP_002316984.1| (e_value=1e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6I6|ETFA_ARATH (e_value=9e-41) Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA PE=1 SV=1;; (*TAIR) AT1G50940.1 (e_value=7e-42) | Symbols: ETFALPHA | electron transfer flavoprotein alpha | chr1:18878038-18879939 REVERSE LENGTH=363;; (*ITAG) Solyc12g005200.1.1 (e_value=1e-44) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:131226-135857 transcript_region:SL2.40ch12:131226..135857- go_terms:GO:0017137,GO:0009055 functional_description:"Electron transfer flavoprotein alpha subunit (AHRD V1 **** B2ICV7_BEII9); contains Interpro domain(s) IPR001308 Electron transfer flavoprotein, alpha subunit "; GO:0017137,GO:0009055 NbS00022385g0002.1 protein NbS00044934g0002.1 protein NbS00000152g0003.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=2e-36) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00028025g0007.1 protein NbS00053761g0001.1 protein NbS00048442g0002.1 protein NbS00006276g0004.1 protein NbC25423528g0001.1 protein ; (*ITAG) Solyc12g008970.1.1 (e_value=6e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2271798-2279705 transcript_region:SL2.40ch12:2271798..2279705- functional_description:"Diacylglycerol acyltransferase (AHRD V1 ***- Q5GKZ7_SOYBN); contains Interpro domain(s) IPR004299 Membrane bound O-acyl transferase, MBOAT "; NbS00035399g0001.1 protein NbS00045270g0001.1 protein ; (*GB) gi|356574838|ref|XP_003555551.1| (e_value=3e-63) PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3-like [Glycine max];; (*SWP) sp|Q9SYK4|IP5PD_ARATH (e_value=2e-55) Type I inositol 1,4,5-trisphosphate 5-phosphatase 13 OS=Arabidopsis thaliana GN=5PTASE13 PE=1 SV=1;; (*TAIR) AT1G05630.2 (e_value=1e-56) | Symbols: AT5PTASE13, 5PTASE13 | Endonuclease/exonuclease/phosphatase family protein | chr1:1682483-1687153 FORWARD LENGTH=1136;; (*ITAG) Solyc11g008800.1.1 (e_value=1e-125) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2978131-2987532 transcript_region:SL2.40ch11:2978131..2987532- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00016026g0002.1 protein NbS00022127g0001.1 protein NbS00040389g0002.1 protein NbS00019460g0002.1 protein NbS00022318g0001.1 protein ; (*ITAG) Solyc02g091080.1.1 (e_value=3e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47073657-47075912 transcript_region:SL2.40ch02:47073657..47075912- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_SHIF8); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00000828g0001.1 protein ; (*ITAG) Solyc01g090230.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00019482g0001.1 protein ; (*GB) gi|224078678|ref|XP_002305602.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6ZAR0|ROC1_ORYSJ (e_value=8e-52) Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1;; (*TAIR) AT1G05230.4 (e_value=6e-53) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=721;; (*ITAG) Solyc02g080260.2.1 (e_value=7e-52) genomic_reference:SL2.40ch02 gene_region:39110708-39114667 transcript_region:SL2.40ch02:39110708..39114667+ go_terms:GO:0043565 functional_description:"Homeobox leucine-zipper protein (AHRD V1 ***- Q8H962_ZINEL); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00052088g0001.1 protein NbS00017688g0002.1 protein ; (*GB) gi|193290650|gb|ACF17633.1| (e_value=2e-28) putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Capsicum annuum];; (*TAIR) AT2G38040.2 (e_value=6e-12) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc09g013080.2.1 (e_value=4e-33) genomic_reference:SL2.40ch09 gene_region:5484876-5491347 transcript_region:SL2.40ch09:5484876..5491347- go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- B7KJL9_CYAP7); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00005256g0006.1 protein NbC23587611g0001.1 protein ; (*GB) gi|359491272|ref|XP_003634254.1| (e_value=3e-25) PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9S7R4|PP125_ARATH (e_value=3e-24) Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1;; (*TAIR) AT1G74900.1 (e_value=1e-25) | Symbols: OTP43 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:28133933-28135381 FORWARD LENGTH=453;; (*ITAG) Solyc03g113750.1.1 (e_value=6e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57864365-57865843 transcript_region:SL2.40ch03:57864365..57865843+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022854g0001.1 protein NbS00019230g0001.1 protein NbC23638007g0001.1 protein ; (*ITAG) Solyc02g081420.2.1 (e_value=1e-22) genomic_reference:SL2.40ch02 gene_region:39973273-39980010 transcript_region:SL2.40ch02:39973273..39980010- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00010626g0003.1 protein NbS00017435g0001.1 protein ; (*GB) gi|20467419|gb|AAL27840.1| (e_value=1e-40) ATPase beta subunit [Sequoia sempervirens];; (*SWP) sp|Q85V27|ATPB_BRIAM (e_value=9e-40) ATP synthase subunit beta, chloroplastic OS=Brimeura amethystina GN=atpB PE=3 SV=1;; (*ITAG) ATCG00480.1 (e_value=1e-39) | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=498;; (*ITAG) Solyc01g007320.2.1 (e_value=3e-40) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00011211g0003.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-34) RNase H family protein [Solanum demissum]; NbS00001961g0001.1 protein NbS00030236g0001.1 protein NbS00055484g0001.1 protein ; (*ITAG) Solyc10g076960.1.1 (e_value=8e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59233855-59236113 transcript_region:SL2.40ch10:59233855..59236113+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE)"; NbS00001989g0003.1 protein NbS00001989g0005.1 protein ; (*GB) gi|222641372|gb|EEE69504.1| (e_value=1e-37) hypothetical protein OsJ_28950 [Oryza sativa Japonica Group];; (*ITAG) Solyc11g032040.1.1 (e_value=1e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:20970775-20974559 transcript_region:SL2.40ch11:20970775..20974559- functional_description:"Transposase family tnp2 protein (AHRD V1 *--- Q6ATT2_ORYSJ)"; NbS00020326g0003.1 protein NbS00020326g0004.1 protein NbS00003731g0005.1 protein ; (*GB) gi|255583226|ref|XP_002532378.1| (e_value=1e-51) triacylglycerol lipase, putative [Ricinus communis];; (*TAIR) AT2G42450.1 (e_value=1e-39) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr2:17672425-17674854 REVERSE LENGTH=546;; (*ITAG) Solyc06g083920.2.1 (e_value=2e-59) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00003020g0005.1 protein ; (*ITAG) Solyc11g071500.1.1 (e_value=6e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52038326-52041685 transcript_region:SL2.40ch11:52038326..52041685+ go_terms:GO:0003677 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9FNN6_ARATH); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003677 NbS00038906g0001.1 protein NbS00039883g0001.1 protein ; (*GB) gi|359494123|ref|XP_002278616.2| (e_value=2e-43) PREDICTED: cytochrome P450 716B1-like [Vitis vinifera];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=2e-18) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36140.1 (e_value=5e-18) | Symbols: CYP716A2 | cytochrome P450, family 716, subfamily A, polypeptide 2 | chr5:14212212-14213259 REVERSE LENGTH=318;; (*ITAG) Solyc07g064450.2.1 (e_value=2e-59) genomic_reference:SL2.40ch07 gene_region:63829173-63831157 transcript_region:SL2.40ch07:63829173..63831157- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044485g0002.1 protein ; (*GB) gi|224117608|ref|XP_002317621.1| (e_value=3e-38) SAUR family protein [Populus trichocarpa];; (*TAIR) AT3G12955.1 (e_value=7e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr3:4135659-4136078 REVERSE LENGTH=139;; (*ITAG) Solyc07g042490.1.1 (e_value=3e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:53019216-53019608 transcript_region:SL2.40ch07:53019216..53019608- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 ***- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00049678g0002.1 protein NbS00052957g0001.1 protein NbS00006111g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-36) hypothetical protein [Nicotiana tabacum]; NbS00014805g0001.1 protein NbS00030366g0001.1 protein NbS00001886g0001.1 protein NbS00007787g0001.1 protein ; (*ITAG) Solyc12g009640.1.1 (e_value=6e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2917443-2920250 transcript_region:SL2.40ch12:2917443..2920250+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00019530g0004.1 protein NbS00043827g0003.1 protein NbS00032837g0001.1 protein ; (*ITAG) Solyc11g012920.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5707278-5715062 transcript_region:SL2.40ch11:5707278..5715062- functional_description:"AT4G08310 protein (Fragment) (AHRD V1 ***- B9DFL6_ARATH); contains Interpro domain(s) IPR019098 Histone chaperone domain CHZ "; NbS00019654g0002.1 protein NbS00019654g0003.1 protein NbS00010301g0105.1 protein NbC23445168g0001.1 protein ; (*GB) gi|13160653|gb|AAK13318.1|AF290958_1 (e_value=9e-30) ATP:citrate lyase [Capsicum annuum];; (*SWP) sp|Q9C522|ACLB1_ARATH (e_value=6e-30) ATP-citrate synthase beta chain protein 1 OS=Arabidopsis thaliana GN=ACLB-1 PE=2 SV=1;; (*TAIR) AT3G06650.1 (e_value=4e-31) | Symbols: ACLB-1 | ATP-citrate lyase B-1 | chr3:2079247-2082633 REVERSE LENGTH=608;; (*ITAG) Solyc12g099260.1.1 (e_value=8e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00047751g0002.1 protein NbS00012569g0001.1 protein NbS00012569g0004.1 protein NbS00018358g0002.1 protein NbS00027802g0001.1 protein NbS00025034g0001.1 protein ; (*GB) gi|351727995|ref|NP_001236156.1| (e_value=8e-24) uncharacterized protein LOC100500051 [Glycine max];; (*SWP) sp|Q9SRQ3|PE191_ARATH (e_value=3e-17) Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1;; (*TAIR) AT3G03490.1 (e_value=2e-18) | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830302-831759 REVERSE LENGTH=248;; (*ITAG) Solyc06g060720.2.1 (e_value=3e-37) genomic_reference:SL2.40ch06 gene_region:35123417-35127956 transcript_region:SL2.40ch06:35123417..35127956- go_terms:GO:0005515 functional_description:"Peroxisomal biogenesis factor 19 (AHRD V1 ***- B6TC68_MAIZE); contains Interpro domain(s) IPR006708 Pex19 protein "; GO:0005515 NbS00035099g0001.1 protein NbS00025164g0001.1 protein NbS00009026g0102.1 protein NbS00053110g0001.1 protein ; (*GB) gi|356542555|ref|XP_003539732.1| (e_value=1e-38) PREDICTED: E3 SUMO-protein ligase SIZ1-like [Glycine max];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=5e-25) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.5 (e_value=4e-26) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300792 FORWARD LENGTH=885;; (*ITAG) Solyc11g069160.1.1 (e_value=2e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00018974g0001.1 protein NbS00022327g0002.1 protein NbC26316418g0002.1 protein NbS00061305g0001.1 protein NbS00022929g0001.1 protein ; (*GB) gi|359479858|ref|XP_002271564.2| (e_value=8e-32) PREDICTED: ribosome biogenesis GTPase A-like [Vitis vinifera];; (*TAIR) AT4G02790.1 (e_value=8e-27) | Symbols: | GTP-binding family protein | chr4:1247416-1249351 FORWARD LENGTH=372;; (*ITAG) Solyc06g084270.2.1 (e_value=4e-46) genomic_reference:SL2.40ch06 gene_region:45754284-45760253 transcript_region:SL2.40ch06:45754284..45760253+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7M3D0_ARALY); contains Interpro domain(s) IPR019991 GTP-binding protein, ribosome biogenesis, YlqF "; GO:0003924 NbS00042403g0002.1 protein NbS00013517g0001.1 protein NbS00013517g0004.1 protein ; (*GB) gi|225443280|ref|XP_002273667.1| (e_value=1e-94) PREDICTED: exocyst complex component 8 [Vitis vinifera];; (*TAIR) AT1G10385.1 (e_value=1e-89) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr1:3403224-3405856 FORWARD LENGTH=754;; (*ITAG) Solyc04g005850.1.1 (e_value=1e-133) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:542180-545744 transcript_region:SL2.40ch04:542180..545744+ functional_description:"AT1G10385-like protein (Fragment) (AHRD V1 *-*- D6PN92_9BRAS); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; NbS00007699g0001.1 protein ; (*GB) gi|298205141|emb|CBI17200.3| (e_value=3e-30) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc07g061750.2.1 (e_value=3e-13) genomic_reference:SL2.40ch07 gene_region:61932745-61935454 transcript_region:SL2.40ch07:61932745..61935454+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00007699g0004.1 protein NbC25927875g0001.1 protein ; (*GB) gi|15227253|ref|NP_179847.1| (e_value=4e-60) rhamnogalacturonate lyase-like protein [Arabidopsis thaliana];; (*TAIR) AT2G22620.1 (e_value=9e-63) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc04g014450.1.1 (e_value=4e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4673135-4679100 transcript_region:SL2.40ch04:4673135..4679100- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00013914g0001.1 protein ; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=4e-79) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=1e-80) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT3G08580.2 (e_value=1e-54) | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605706-2607030 REVERSE LENGTH=381;; (*ITAG) Solyc11g062130.1.1 (e_value=2e-76) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00020619g0002.1 protein NbS00045221g0001.1 protein ; (*GB) gi|356530237|ref|XP_003533689.1| (e_value=2e-33) PREDICTED: sacsin-like [Glycine max];; (*TAIR) AT5G23110.1 (e_value=4e-29) | Symbols: | Zinc finger, C3HC4 type (RING finger) family protein | chr5:7758307-7775509 FORWARD LENGTH=4706;; (*ITAG) Solyc02g014170.2.1 (e_value=6e-38) genomic_reference:SL2.40ch02 gene_region:6567520-6572674 transcript_region:SL2.40ch02:6567520..6572674- go_terms:GO:0008270 functional_description:"Baculoviral IAP repeat-containing 2 (AHRD V1 *--- Q6P6S1_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00028735g0001.1 protein NbS00010707g0005.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=1e-33) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum]; NbS00001569g0002.1 protein NbS00008229g0001.1 protein NbS00008229g0003.1 protein NbS00014462g0003.1 protein ; (*GB) gi|297736647|emb|CBI25518.3| (e_value=1e-63) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G10840.1 (e_value=6e-59) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:3391207-3393281 REVERSE LENGTH=466;; (*ITAG) Solyc03g095290.2.1 (e_value=4e-84) genomic_reference:SL2.40ch03 gene_region:49762383-49769731 transcript_region:SL2.40ch03:49762383..49769731+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7L9R5_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00014462g0006.1 protein ; (*TAIR) AT5G24910.1 (e_value=3e-13) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc03g095310.2.1 (e_value=1e-15) genomic_reference:SL2.40ch03 gene_region:49777121-49783215 transcript_region:SL2.40ch03:49777121..49783215- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00026600g0001.1 protein NbS00054299g0001.1 protein ; (*GB) gi|224121624|ref|XP_002330747.1| (e_value=5e-15) predicted protein [Populus trichocarpa]; NbS00008611g0001.1 protein NbS00001619g0001.1 protein NbS00001934g0001.1 protein NbS00012292g0001.1 protein NbS00002350g0002.1 protein NbS00002350g0004.1 protein NbS00038859g0001.1 protein NbS00038859g0002.1 protein NbS00000009g0003.1 protein ; (*GB) gi|225442470|ref|XP_002283686.1| (e_value=4e-34) PREDICTED: histidine-containing phosphotransfer protein 4 [Vitis vinifera];; (*SWP) sp|Q9LU15|AHP4_ARATH (e_value=5e-33) Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2;; (*TAIR) AT3G16360.2 (e_value=4e-34) | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145;; (*ITAG) Solyc11g070150.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51751629-51754234 transcript_region:SL2.40ch11:51751629..51754234- go_terms:GO:0000160 functional_description:"Histidine phosphotransfer protein (AHRD V1 ***- B9GGM6_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0000160 NbC23538168g0001.1 protein ; (*GB) gi|297845434|ref|XP_002890598.1| (e_value=8e-35) hypothetical protein ARALYDRAFT_889930 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LRA7|TPS9_ARATH (e_value=1e-35) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=1 SV=1;; (*TAIR) AT1G23870.1 (e_value=1e-36) | Symbols: ATTPS9, TPS9 | trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867;; (*ITAG) Solyc05g005750.2.1 (e_value=2e-40) genomic_reference:SL2.40ch05 gene_region:574848-578018 transcript_region:SL2.40ch05:574848..578018+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00026222g0001.1 protein NbS00009693g0006.1 protein NbS00028147g0001.1 protein NbS00025437g0004.1 protein NbS00045592g0001.1 protein NbS00023080g0202.1 protein NbS00002628g0002.1 protein NbS00026064g0001.1 protein NbS00029024g0004.1 protein NbS00013712g0002.1 protein ; (*GB) gi|224062481|ref|XP_002300840.1| (e_value=3e-46) hypothetical protein POPTRDRAFT_551164 [Populus trichocarpa];; (*SWP) sp|Q498M4|WDR5_RAT (e_value=2e-41) WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1;; (*TAIR) AT4G02730.1 (e_value=4e-45) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:1207759-1209066 FORWARD LENGTH=333;; (*ITAG) Solyc09g065290.2.1 (e_value=6e-51) genomic_reference:SL2.40ch09 gene_region:58949458-58951870 transcript_region:SL2.40ch09:58949458..58951870+ go_terms:GO:0035064 functional_description:"Wd-repeat protein (AHRD V1 **-- Q17GJ0_AEDAE); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0035064 NbS00011070g0002.1 protein NbS00003884g0002.1 protein ; (*ITAG) Solyc08g005500.2.1 (e_value=2e-14) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00003884g0004.1 protein NbS00003884g0005.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=4e-14) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group];; (*SWP) sp|P0C2F6|RNHX1_ARATH (e_value=1e-12) Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1;; (*ITAG) Solyc07g056380.1.1 (e_value=6e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00034537g0001.1 protein NbS00001417g0001.1 protein NbS00035413g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-13) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00015088g0005.1 protein NbS00023314g0003.1 protein NbC24499537g0001.1 protein ; (*GB) gi|255561307|ref|XP_002521664.1| (e_value=2e-69) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FRI5|PPR57_ARATH (e_value=2e-65) Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1;; (*TAIR) AT1G25360.1 (e_value=2e-66) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:8894428-8896800 FORWARD LENGTH=790;; (*ITAG) Solyc04g082870.1.1 (e_value=6e-94) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010567g0001.1 protein NbS00001894g0002.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=6e-22) hypothetical protein [Cucumis melo subsp. melo]; NbS00005629g0001.1 protein ; (*GB) gi|147819065|emb|CAN64891.1| (e_value=7e-24) hypothetical protein VITISV_016440 [Vitis vinifera];; (*TAIR) AT5G03990.1 (e_value=1e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1075957-1077358 FORWARD LENGTH=302;; (*ITAG) Solyc01g068170.2.1 (e_value=3e-11) genomic_reference:SL2.40ch01 gene_region:69666092-69671384 transcript_region:SL2.40ch01:69666092..69671384+ functional_description:"Oxidoreductase/ transition metal ion binding protein (AHRD V1 *-*- D7LU03_ARALY)"; NbS00018339g0001.1 protein ; (*GB) gi|255564156|ref|XP_002523075.1| (e_value=2e-14) beta-glucosidase, putative [Ricinus communis];; (*ITAG) Solyc09g075060.2.1 (e_value=6e-15) genomic_reference:SL2.40ch09 gene_region:62378413-62381481 transcript_region:SL2.40ch09:62378413..62381481- go_terms:GO:0004338 functional_description:"Beta-glucosidase (AHRD V1 **** D7L7Z3_ARALY); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0004338 NbS00039656g0002.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00021357g0001.1 protein NbS00007010g0001.1 protein NbS00027050g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027050g0004.1 protein NbS00016971g0003.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-16) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00018654g0001.1 protein NbS00011126g0001.1 protein NbS00011126g0002.1 protein ; (*GB) gi|298676333|dbj|BAJ09698.1| (e_value=1e-22) ARGONAUTE 1 [Nicotiana tabacum];; (*SWP) sp|Q7XSA2|AGO1B_ORYSJ (e_value=2e-21) Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3;; (*TAIR) AT5G43810.2 (e_value=2e-20) | Symbols: ZLL | Stabilizer of iron transporter SufD / Polynucleotidyl transferase | chr5:17611939-17616562 FORWARD LENGTH=988;; (*ITAG) Solyc06g072300.2.1 (e_value=1e-23) genomic_reference:SL2.40ch06 gene_region:40960724-40969540 transcript_region:SL2.40ch06:40960724..40969540- go_terms:GO:0019899 functional_description:"ARGONAUTE 1 (AHRD V1 ***- D6RUV9_TOBAC); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00053443g0001.1 protein NbS00017174g0001.1 protein NbC23936917g0001.1 protein ; (*GB) gi|1360090|emb|CAA64829.1| (e_value=5e-27) C1C-Nt1 [Nicotiana tabacum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=2e-25) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=1e-26) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc10g044470.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21959526-21966277 transcript_region:SL2.40ch10:21959526..21966277+ go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00056060g0001.1 protein NbS00013112g0002.1 protein NbS00020310g0001.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=1e-19) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g021480.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:18094016-18095371 transcript_region:SL2.40ch07:18094016..18095371- functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR)"; NbS00028714g0001.1 protein NbS00009938g0002.1 protein ; (*GB) gi|357501775|ref|XP_003621176.1| (e_value=3e-20) hypothetical protein MTR_7g010090 [Medicago truncatula];; (*SWP) sp|Q9LH89|Y3885_ARATH (e_value=4e-18) Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1;; (*TAIR) AT3G28850.1 (e_value=3e-19) | Symbols: | Glutaredoxin family protein | chr3:10848669-10849955 FORWARD LENGTH=428;; (*ITAG) Solyc02g067400.1.1 (e_value=7e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:32175252-32176230 transcript_region:SL2.40ch02:32175252..32176230- go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 *-*- D7MJF8_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00009938g0003.1 protein ; (*GB) gi|359488904|ref|XP_003633843.1| (e_value=2e-15) PREDICTED: uncharacterized protein At5g39865-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FLE8|Y5986_ARATH (e_value=7e-12) Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1;; (*TAIR) AT5G39865.1 (e_value=5e-13) | Symbols: | Glutaredoxin family protein | chr5:15965560-15966732 REVERSE LENGTH=390;; (*ITAG) Solyc02g087850.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:44693201-44694460 transcript_region:SL2.40ch02:44693201..44694460+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7LM49_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00004551g0001.1 protein NbS00003836g0002.1 protein NbS00037500g0001.1 protein NbS00010089g0003.1 protein NbS00022659g0102.1 protein NbS00027321g0001.1 protein ; (*GB) gi|225449430|ref|XP_002277994.1| (e_value=7e-43) PREDICTED: LOB domain-containing protein 33 [Vitis vinifera];; (*SWP) sp|Q9LHS8|LBD33_ARATH (e_value=1e-34) LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1;; (*TAIR) AT5G06080.1 (e_value=1e-35) | Symbols: LBD33 | LOB domain-containing protein 33 | chr5:1830796-1831427 REVERSE LENGTH=177;; (*ITAG) Solyc09g066270.2.1 (e_value=1e-31) genomic_reference:SL2.40ch09 gene_region:60295041-60296015 transcript_region:SL2.40ch09:60295041..60296015- functional_description:"LOB domain protein 14 (AHRD V1 ***- D7LD16_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; NbS00027321g0002.1 protein NbS00060007g0001.1 protein NbS00013756g0101.1 protein NbS00005947g0003.1 protein NbS00023291g0003.1 protein ; (*GB) gi|225433790|ref|XP_002269080.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M9X9|PPR18_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1;; (*TAIR) AT1G06710.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2056999-2060242 REVERSE LENGTH=997;; (*ITAG) Solyc02g081250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00040018g0001.1 protein ; (*GB) gi|359484512|ref|XP_003633115.1| (e_value=4e-34) PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic 1-like [Vitis vinifera];; (*SWP) sp|Q9SW96|SYNC1_ARATH (e_value=1e-34) Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1;; (*TAIR) AT5G56680.1 (e_value=9e-36) | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr5:22936645-22938841 FORWARD LENGTH=572;; (*ITAG) Solyc10g080710.1.1 (e_value=3e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61247846-61251817 transcript_region:SL2.40ch10:61247846..61251817- go_terms:GO:0005515,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase 2 (AHRD V1 **** D7L6K3_ARALY); contains Interpro domain(s) IPR004522 Asparaginyl-tRNA synthetase, class IIb "; GO:0005515,GO:0004816 NbS00013073g0001.1 protein ; (*GB) gi|15231261|ref|NP_187958.1| (e_value=6e-58) Lysyl-tRNA synthetase, class II [Arabidopsis thaliana];; (*SWP) sp|Q8YPW9|SYK_NOSS1 (e_value=3e-37) Lysine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lysS PE=3 SV=1;; (*TAIR) AT3G13490.1 (e_value=1e-60) | Symbols: OVA5, ATKRS-2 | Lysyl-tRNA synthetase, class II | chr3:4395984-4399302 REVERSE LENGTH=602;; (*ITAG) Solyc01g005540.2.1 (e_value=3e-65) genomic_reference:SL2.40ch01 gene_region:359831-370398 transcript_region:SL2.40ch01:359831..370398- go_terms:GO:0003676,GO:0005737 functional_description:"Lysyl-tRNA synthetase (AHRD V1 ***- B9SBP3_RICCO); contains Interpro domain(s) IPR002313 Lysyl-tRNA synthetase, class II "; GO:0003676,GO:0005737 NbS00037718g0001.1 protein NbS00000122g0001.1 protein NbS00022038g0001.1 protein NbS00023794g0002.1 protein NbS00041855g0001.1 protein NbS00021544g0002.1 protein ; (*GB) gi|225463964|ref|XP_002271187.1| (e_value=7e-50) PREDICTED: O-methyltransferase 3-like [Vitis vinifera];; (*SWP) sp|Q8TCB7|METL6_HUMAN (e_value=4e-20) Methyltransferase-like protein 6 OS=Homo sapiens GN=METTL6 PE=2 SV=2;; (*TAIR) AT1G54650.1 (e_value=3e-47) | Symbols: | Methyltransferase family protein | chr1:20405813-20407686 REVERSE LENGTH=299;; (*ITAG) Solyc11g006130.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:892429-897356 transcript_region:SL2.40ch11:892429..897356- go_terms:GO:0008152,GO:0008168 functional_description:"Methyltransferase-like protein 6 (AHRD V1 ***- B5X6R8_SALSA); contains Interpro domain(s) IPR017280 Methyltransferase, METTL2, predicted "; GO:0008152,GO:0008168 NbS00014634g0001.1 protein NbS00005428g0005.1 protein ; (*GB) gi|224079782|ref|XP_002305942.1| (e_value=7e-106) predicted protein [Populus trichocarpa];; (*TAIR) AT1G79940.3 (e_value=1e-103) | Symbols: ATERDJ2A | DnaJ / Sec63 Brl domains-containing protein | chr1:30070023-30073237 FORWARD LENGTH=687;; (*ITAG) Solyc03g007610.2.1 (e_value=4e-141) genomic_reference:SL2.40ch03 gene_region:2146595-2154565 transcript_region:SL2.40ch03:2146595..2154565- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_DICT6); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00014091g0002.1 protein NbC24271932g0001.1 protein ; (*GB) gi|255540807|ref|XP_002511468.1| (e_value=2e-63) cell division cycle, putative [Ricinus communis];; (*SWP) sp|Q9STS3|CDC23_ARATH (e_value=6e-52) Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1;; (*TAIR) AT3G48150.1 (e_value=4e-53) | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579;; (*ITAG) Solyc03g113740.2.1 (e_value=1e-67) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00015591g0001.1 protein NbS00029320g0002.1 protein NbS00049103g0001.1 protein NbS00030800g0001.1 protein NbS00003427g0102.1 protein NbS00000460g0001.1 protein NbS00007920g0001.1 protein ; (*GB) gi|359490401|ref|XP_002279763.2| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100265879 [Vitis vinifera];; (*TAIR) AT5G62090.2 (e_value=4e-17) | Symbols: SLK2 | SEUSS-like 2 | chr5:24935221-24938540 REVERSE LENGTH=816;; (*ITAG) Solyc03g026190.2.1 (e_value=1e-40) genomic_reference:SL2.40ch03 gene_region:7965135-7970790 transcript_region:SL2.40ch03:7965135..7970790- functional_description:"Transcriptional corepressor SEUSS (AHRD V1 *--- SEUSS_ARATH)"; NbS00018197g0003.1 protein ; (*GB) gi|7271222|emb|CAB81558.1| (e_value=4e-30) cyclin B1 [Nicotiana tabacum];; (*SWP) sp|P34800|CCN1_ANTMA (e_value=6e-24) G2/mitotic-specific cyclin-1 OS=Antirrhinum majus PE=2 SV=1;; (*TAIR) AT4G37490.1 (e_value=1e-24) | Symbols: CYC1, CYCB1;1, CYCB1 | CYCLIN B1;1 | chr4:17622129-17624208 REVERSE LENGTH=428;; (*ITAG) Solyc01g009040.2.1 (e_value=4e-31) genomic_reference:SL2.40ch01 gene_region:3041736-3044740 transcript_region:SL2.40ch01:3041736..3044740+ go_terms:GO:0016538 functional_description:"Cyclin B1 (AHRD V1 **** Q9LD02_TOBAC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0016538 NbS00028586g0004.1 protein NbS00028586g0005.1 protein NbS00029096g0001.1 protein NbS00032132g0001.1 protein NbS00032132g0003.1 protein NbS00032132g0004.1 protein NbS00009667g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-34) RNase H family protein [Solanum demissum];; (*ITAG) Solyc00g230060.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19613244-19614249 transcript_region:SL2.40ch00:19613244..19614249+ go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00033596g0001.1 protein NbS00035590g0001.1 protein NbS00035590g0002.1 protein NbS00008028g0001.1 protein NbS00008028g0002.1 protein NbS00032109g0002.1 protein ; (*GB) gi|296081201|emb|CBI18227.3| (e_value=6e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q2KI24|MTHSD_BOVIN (e_value=7e-17) Methenyltetrahydrofolate synthase domain-containing protein OS=Bos taurus GN=MTHFSD PE=2 SV=1;; (*TAIR) AT1G76730.1 (e_value=2e-40) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr1:28803033-28804703 REVERSE LENGTH=354;; (*ITAG) Solyc04g071700.2.1 (e_value=1e-68) genomic_reference:SL2.40ch04 gene_region:56268572-56271497 transcript_region:SL2.40ch04:56268572..56271497+ go_terms:GO:0003824 functional_description:"5-formyltetrahydrofolate cyclo-ligase family protein (AHRD V1 ***- D7KTW5_ARALY); contains Interpro domain(s) IPR002698 5-formyltetrahydrofolate cyclo-ligase "; GO:0003824 NbS00003163g0002.1 protein ; (*GB) gi|146188483|emb|CAK12837.1| (e_value=1e-52) ribulose 1,5 biphosphate carboxylase/oxygenase [Liparia genistoides];; (*SWP) sp|P48709|RBL_NICDE (e_value=2e-52) Ribulose bisphosphate carboxylase large chain OS=Nicotiana debneyi GN=rbcL PE=3 SV=1;; (*ITAG) ATCG00490.1 (e_value=5e-50) | Symbols: RBCL | ribulose-bisphosphate carboxylases | chrC:54958-56397 FORWARD LENGTH=479;; (*ITAG) Solyc01g007330.2.1 (e_value=1e-51) genomic_reference:SL2.40ch01 gene_region:1851938-1853783 transcript_region:SL2.40ch01:1851938..1853783+ go_terms:GO:0015977,GO:0009536 functional_description:"Ribulose bisphosphate carboxylase large chain (AHRD V1 ***- RBL_SOLLC); contains Interpro domain(s) IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal "; GO:0015977,GO:0009536 NbS00003163g0003.1 protein ; (*GB) gi|225430947|ref|XP_002271427.1| (e_value=2e-43) PREDICTED: auxin-induced protein 15A [Vitis vinifera];; (*SWP) sp|P33079|A10A5_SOYBN (e_value=1e-28) Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18080.1 (e_value=2e-33) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5983840-5984112 FORWARD LENGTH=90;; (*ITAG) Solyc10g054760.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00003163g0004.1 protein ; (*GB) gi|225427874|ref|XP_002276412.1| (e_value=1e-40) PREDICTED: auxin-induced protein X10A [Vitis vinifera];; (*SWP) sp|P33080|AX10A_SOYBN (e_value=1e-28) Auxin-induced protein X10A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G18010.1 (e_value=1e-32) | Symbols: | SAUR-like auxin-responsive protein family | chr5:5963033-5963305 REVERSE LENGTH=90;; (*ITAG) Solyc10g054760.1.1 (e_value=3e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51374622-51374909 transcript_region:SL2.40ch10:51374622..51374909+ functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00022366g0001.1 protein NbS00023911g0002.1 protein ; (*GB) gi|147852240|emb|CAN80132.1| (e_value=3e-13) hypothetical protein VITISV_012031 [Vitis vinifera]; NbS00058165g0001.1 protein ; (*GB) gi|297736577|emb|CBI25448.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GUG9|PUB11_ARATH (e_value=1e-15) U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2;; (*TAIR) AT1G23030.1 (e_value=1e-16) | Symbols: | ARM repeat superfamily protein | chr1:8156745-8158842 FORWARD LENGTH=612;; (*ITAG) Solyc06g051090.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:30698443-30700131 transcript_region:SL2.40ch06:30698443..30700131- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00018906g0001.1 protein ; (*GB) gi|147770909|emb|CAN67540.1| (e_value=1e-15) hypothetical protein VITISV_012382 [Vitis vinifera];; (*TAIR) AT5G07400.1 (e_value=2e-12) | Symbols: | forkhead-associated domain-containing protein / FHA domain-containing protein | chr5:2340814-2345321 FORWARD LENGTH=1084;; (*ITAG) Solyc03g117960.2.1 (e_value=3e-39) genomic_reference:SL2.40ch03 gene_region:60986350-60996371 transcript_region:SL2.40ch03:60986350..60996371- go_terms:GO:0005634,GO:0016818 functional_description:"Tyrosyl-DNA phosphodiesterase family protein (AHRD V1 *-*- B6AFR8_CRYMR); contains Interpro domain(s) IPR010347 Tyrosyl-DNA phosphodiesterase "; GO:0005634,GO:0016818 NbS00039198g0001.1 protein NbC23373662g0001.1 protein ; (*TAIR) AT2G37410.2 (e_value=7e-14) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc06g082270.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00026625g0002.1 protein NbS00026625g0003.1 protein NbS00008719g0002.1 protein NbC25903251g0001.1 protein ; (*GB) gi|302769267|ref|XP_002968053.1| (e_value=5e-45) hypothetical protein SELMODRAFT_451301 [Selaginella moellendorffii];; (*SWP) sp|Q9SU08|AUXI1_ARATH (e_value=4e-45) Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2;; (*TAIR) AT4G12780.2 (e_value=3e-46) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:7512200-7516655 FORWARD LENGTH=894;; (*ITAG) Solyc06g060090.2.1 (e_value=2e-56) genomic_reference:SL2.40ch06 gene_region:34386124-34395168 transcript_region:SL2.40ch06:34386124..34395168+ go_terms:GO:0031072 functional_description:"UBA/TS-N domain-containing protein (AHRD V1 *--- C1H097_PARBA); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00012685g0002.1 protein NbS00027324g0003.1 protein NbS00005612g0001.1 protein NbS00010865g0002.1 protein NbS00010865g0003.1 protein NbS00053566g0001.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=1e-18) predicted protein [Populus trichocarpa]; NbS00045257g0001.1 protein NbS00029240g0001.1 protein ; (*GB) gi|89179421|gb|ABD63156.1| (e_value=4e-18) Retrotransposon gag protein [Asparagus officinalis]; NbC25066442g0001.1 protein NbS00017362g0002.1 protein NbS00017961g0001.1 protein NbS00027081g0001.1 protein ; (*GB) gi|147773589|emb|CAN69897.1| (e_value=5e-19) hypothetical protein VITISV_032062 [Vitis vinifera];; (*TAIR) AT4G36980.2 (e_value=5e-19) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). | chr4:17434283-17437012 REVERSE LENGTH=507;; (*ITAG) Solyc02g090850.2.1 (e_value=2e-25) genomic_reference:SL2.40ch02 gene_region:46898348-46906437 transcript_region:SL2.40ch02:46898348..46906437+ functional_description:"Splicing factor arginine/serine-rich 16 (AHRD V1 *-*- C0HB74_SALSA); contains Interpro domain(s) IPR019147 Splicing factor, suppressor of white apricot "; NbS00027081g0103.1 protein NbS00033987g0001.1 protein NbS00018653g0003.1 protein NbS00004277g0001.1 protein ; (*ITAG) Solyc11g030530.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:18374681-18375528 transcript_region:SL2.40ch11:18374681..18375528- functional_description:"Zinc finger CCHC-type (AHRD V1 ***- Q1SKZ9_MEDTR)"; NbS00010666g0006.1 protein NbS00028471g0004.1 protein ; (*GB) gi|359486028|ref|XP_002268285.2| (e_value=4e-145) PREDICTED: exocyst complex component 3-like [Vitis vinifera];; (*TAIR) AT1G71820.1 (e_value=2e-136) | Symbols: SEC6 | SEC6 | chr1:27010022-27016745 FORWARD LENGTH=752;; (*ITAG) Solyc04g072290.2.1 (e_value=4e-162) genomic_reference:SL2.40ch04 gene_region:56911520-56930725 transcript_region:SL2.40ch04:56911520..56930725+ functional_description:"Exocyst complex component sec6 (AHRD V1 ***- B0CUD6_LACBS); contains Interpro domain(s) IPR010326 Exocyst complex component Sec6 "; NbS00028839g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00028839g0005.1 protein NbS00033889g0004.1 protein ; (*GB) gi|359474779|ref|XP_002280183.2| (e_value=3e-24) PREDICTED: probable receptor-like protein kinase At4g39110-like [Vitis vinifera];; (*SWP) sp|Q9SJT0|Y2214_ARATH (e_value=2e-21) Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1;; (*TAIR) AT2G21480.1 (e_value=2e-22) | Symbols: | Malectin/receptor-like protein kinase family protein | chr2:9202753-9205368 REVERSE LENGTH=871;; (*ITAG) Solyc01g109950.2.1 (e_value=3e-26) genomic_reference:SL2.40ch01 gene_region:88534564-88537518 transcript_region:SL2.40ch01:88534564..88537518+ go_terms:GO:0006468 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0006468 NbS00031168g0102.1 protein NbS00004039g0102.1 protein NbS00004039g0103.1 protein NbS00004516g0001.1 protein ; (*GB) gi|224097562|ref|XP_002310987.1| (e_value=8e-35) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g012660.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:10555142-10556635 transcript_region:SL2.40ch00:10555142..10556635- functional_description:"F-box domain containing protein (AHRD V1 ***- B6UBC8_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00001073g0001.1 protein NbS00026463g0002.1 protein ; (*ITAG) Solyc04g025130.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18068631-18069119 transcript_region:SL2.40ch04:18068631..18069119+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011366g0003.1 protein NbS00002622g0002.1 protein NbS00015803g0002.1 protein NbS00015803g0102.1 protein NbS00015803g0103.1 protein NbS00019413g0003.1 protein ; (*GB) gi|297733723|emb|CBI14970.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g071680.2.1 (e_value=7e-34) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00019043g0001.1 protein NbS00019948g0002.1 protein NbS00020854g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-12) hypothetical protein [Cucumis melo subsp. melo]; NbS00047888g0001.1 protein NbS00034654g0001.1 protein ; (*GB) gi|255543693|ref|XP_002512909.1| (e_value=3e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G14090.1 (e_value=4e-18) | Symbols: | unknown protein; Has 56 Blast hits to 56 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 46; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:4547230-4549214 FORWARD LENGTH=358;; (*ITAG) Solyc05g015880.2.1 (e_value=4e-29) genomic_reference:SL2.40ch05 gene_region:12616663-12619235 transcript_region:SL2.40ch05:12616663..12619235- functional_description:"Genomic DNA chromosome 5 P1 clone MUA22 (AHRD V1 ***- Q9FMU1_ARATH)"; NbS00030010g0002.1 protein NbS00030010g0003.1 protein NbS00007709g0101.1 protein NbS00007709g0201.1 protein NbS00039399g0001.1 protein NbC24066252g0001.1 protein ; (*GB) gi|295291644|gb|ADF87507.1| (e_value=5e-33) ketol-acid reductoisomerase [Catharanthus roseus];; (*SWP) sp|Q65XK0|ILV5_ORYSJ (e_value=6e-33) Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1;; (*TAIR) AT3G58610.3 (e_value=1e-33) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc12g010840.1.1 (e_value=6e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3773065-3778565 transcript_region:SL2.40ch12:3773065..3778565+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D7LW57_ARALY); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00001552g0001.1 protein NbS00016422g0001.1 protein NbS00014118g0002.1 protein NbS00004612g0001.1 protein NbS00045862g0001.1 protein NbS00024291g0002.1 protein NbS00015794g0005.1 protein NbS00034186g0003.1 protein ; (*GB) gi|225443880|ref|XP_002277472.1| (e_value=2e-63) PREDICTED: F-box/kelch-repeat protein At1g30090 [Vitis vinifera];; (*SWP) sp|Q9C6Z0|FBK17_ARATH (e_value=1e-51) F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1;; (*TAIR) AT1G30090.1 (e_value=1e-52) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:10559746-10560942 REVERSE LENGTH=398;; (*ITAG) Solyc02g021600.1.1 (e_value=9e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:13959590-13960798 transcript_region:SL2.40ch02:13959590..13960798+ functional_description:"Kelch-like protein 14 (AHRD V1 *-*- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00006733g0001.1 protein NbS00006733g0002.1 protein NbS00041016g0002.1 protein NbS00010602g0001.1 protein NbS00010602g0102.1 protein NbS00035410g0002.1 protein ; (*ITAG) Solyc07g066170.2.1 (e_value=3e-11) genomic_reference:SL2.40ch07 gene_region:64876218-64880395 transcript_region:SL2.40ch07:64876218..64880395- functional_description:"WPP domain-interacting protein 1 (AHRD V1 ***- WIP1_ARATH)"; NbS00004328g0001.1 protein ; (*ITAG) Solyc04g054170.2.1 (e_value=5e-36) genomic_reference:SL2.40ch04 gene_region:51021361-51028895 transcript_region:SL2.40ch04:51021361..51028895+ functional_description:"CPR5 (Fragment) (AHRD V1 *-*- B0ZWT2_ARATH)"; NbS00004328g0004.1 protein NbS00047206g0002.1 protein NbS00017773g0001.1 protein ; (*GB) gi|359486189|ref|XP_002267256.2| (e_value=1e-16) PREDICTED: RRP12-like protein-like [Vitis vinifera];; (*TAIR) AT2G34357.1 (e_value=2e-14) | Symbols: | ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280;; (*ITAG) Solyc07g042380.2.1 (e_value=1e-35) genomic_reference:SL2.40ch07 gene_region:52832624-52846801 transcript_region:SL2.40ch07:52832624..52846801- go_terms:GO:0005488 functional_description:"Ribosomal RNA processing protein (AHRD V1 *--- A6ZWN4_YEAS7); contains Interpro domain(s) IPR012978 Region of unknown function, NUC173 "; GO:0005488 NbS00017773g0003.1 protein NbS00016946g0005.1 protein NbS00050231g0001.1 protein NbC24077899g0001.1 protein ; (*GB) gi|356576487|ref|XP_003556362.1| (e_value=5e-44) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Glycine max];; (*SWP) sp|Q6YYA3|CRS1_ORYSJ (e_value=2e-23) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1;; (*TAIR) AT3G23070.1 (e_value=2e-44) | Symbols: ATCFM3A, CFM3A | CRM family member 3A | chr3:8203548-8207243 FORWARD LENGTH=881;; (*ITAG) Solyc09g083350.2.1 (e_value=8e-53) genomic_reference:SL2.40ch09 gene_region:64410108-64416669 transcript_region:SL2.40ch09:64410108..64416669+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00001197g0002.1 protein NbC25780377g0001.1 protein ; (*GB) gi|255540879|ref|XP_002511504.1| (e_value=5e-151) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8BL06|UBP54_MOUSE (e_value=3e-23) Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2;; (*TAIR) AT3G47890.1 (e_value=9e-144) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc06g071120.2.1 (e_value=7e-170) genomic_reference:SL2.40ch06 gene_region:40097356-40108564 transcript_region:SL2.40ch06:40097356..40108564+ go_terms:GO:0006511,GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q10RB2_ORYSJ); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00004010g0001.1 protein NbS00004291g0001.1 protein NbS00007991g0005.1 protein NbS00016943g0101.1 protein NbS00005003g0003.1 protein NbS00038956g0001.1 protein NbS00021076g0001.1 protein NbS00026645g0001.1 protein ; (*GB) gi|357487743|ref|XP_003614159.1| (e_value=3e-14) Agamous-like MADS-box protein AGL62 [Medicago truncatula];; (*TAIR) AT2G24840.1 (e_value=1e-12) | Symbols: AGL61, DIA | AGAMOUS-like 61 | chr2:10581082-10581876 FORWARD LENGTH=264;; (*ITAG) Solyc01g106730.1.1 (e_value=9e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00040937g0003.1 protein ; (*GB) gi|358346290|ref|XP_003637202.1| (e_value=6e-13) hypothetical protein MTR_077s0013 [Medicago truncatula];; (*ITAG) Solyc06g030540.2.1 (e_value=3e-22) genomic_reference:SL2.40ch06 gene_region:16068615-16069177 transcript_region:SL2.40ch06:16068615..16069177- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018848 WIYLD domain "; NbS00000216g0001.1 protein NbS00062090g0001.1 protein NbS00000884g0001.1 protein NbS00019404g0003.1 protein ; (*GB) gi|15822693|gb|AAL03950.1| (e_value=1e-39) relA/spoT-like protein RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=6e-19) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=1e-33) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00039609g0001.1 protein NbS00013856g0004.1 protein ; (*ITAG) Solyc03g005850.2.1 (e_value=2e-17) genomic_reference:SL2.40ch03 gene_region:574447-576938 transcript_region:SL2.40ch03:574447..576938- functional_description:"Unknown Protein (AHRD V1)"; NbC25110576g0001.1 protein ; (*ITAG) Solyc09g015930.2.1 (e_value=2e-19) genomic_reference:SL2.40ch09 gene_region:11381642-11399733 transcript_region:SL2.40ch09:11381642..11399733+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** D3TRA6_GLOMM); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00027376g0006.1 protein ; (*GB) gi|224104321|ref|XP_002313395.1| (e_value=1e-60) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58920.1 (e_value=6e-57) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23793239-23794014 FORWARD LENGTH=162;; (*ITAG) Solyc02g087650.2.1 (e_value=3e-74) genomic_reference:SL2.40ch02 gene_region:44594705-44595462 transcript_region:SL2.40ch02:44594705..44595462+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000245g0001.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00003077g0101.1 protein NbS00014442g0001.1 protein ; (*GB) gi|302143524|emb|CBI22085.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1U4|APC5_ARATH (e_value=1e-160) Anaphase-promoting complex subunit 5 OS=Arabidopsis thaliana GN=APC5 PE=2 SV=1;; (*TAIR) AT1G06590.1 (e_value=1e-161) | Symbols: | unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | chr1:2016504-2024505 REVERSE LENGTH=916;; (*ITAG) Solyc08g067190.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:53380447-53403465 transcript_region:SL2.40ch08:53380447..53403465- functional_description:"Anaphase promoting complex subunit 5 (AHRD V1 ***- Q5SCA2_OSTTA)"; NbS00031028g0003.1 protein ; (*ITAG) Solyc10g018850.1.1 (e_value=7e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:10718465-10722074 transcript_region:SL2.40ch10:10718465..10722074- go_terms:GO:0005515 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0005515 NbS00031028g0005.1 protein ; (*ITAG) Solyc06g084340.1.1 (e_value=7e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:45781883-45782967 transcript_region:SL2.40ch06:45781883..45782967- go_terms:GO:0030001 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00041350g0001.1 protein ; (*GB) gi|296085363|emb|CBI29095.3| (e_value=2e-74) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8RBN5|SYV_THETN (e_value=8e-39) Valine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=valS PE=3 SV=1;; (*TAIR) AT5G16715.1 (e_value=1e-70) | Symbols: EMB2247 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr5:5485353-5493229 FORWARD LENGTH=974;; (*ITAG) Solyc12g019110.1.1 (e_value=3e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9128686-9150270 transcript_region:SL2.40ch12:9128686..9150270+ go_terms:GO:0005737,GO:0000166 functional_description:"Valyl-tRNA synthetase (AHRD V1 ***- B9LKX4_CHLSY); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0005737,GO:0000166 NbS00044437g0002.1 protein NbS00000187g0001.1 protein NbS00000187g0002.1 protein NbS00000187g0003.1 protein NbS00028191g0002.1 protein ; (*GB) gi|147854388|emb|CAN79106.1| (e_value=6e-16) hypothetical protein VITISV_006258 [Vitis vinifera];; (*ITAG) Solyc06g062660.2.1 (e_value=4e-23) genomic_reference:SL2.40ch06 gene_region:35929195-35941667 transcript_region:SL2.40ch06:35929195..35941667- go_terms:GO:0004565 functional_description:"Beta-galactosidase (AHRD V1 **** D7KR60_ARALY); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565 NbS00029839g0003.1 protein NbS00035779g0005.1 protein ; (*GB) gi|147845883|emb|CAN80085.1| (e_value=2e-31) hypothetical protein VITISV_011295 [Vitis vinifera]; NbS00018593g0001.1 protein ; (*GB) gi|356530169|ref|XP_003533656.1| (e_value=2e-64) PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max];; (*SWP) sp|P98204|ALA1_ARATH (e_value=2e-42) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=2e-43) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc10g074940.1.1 (e_value=8e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57978321-57986678 transcript_region:SL2.40ch10:57978321..57986678+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00009801g0001.1 protein NbS00023215g0002.1 protein NbS00060578g0001.1 protein ; (*ITAG) Solyc03g119580.1.1 (e_value=4e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62190256-62191413 transcript_region:SL2.40ch03:62190256..62191413- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00031887g0001.1 protein ; (*GB) gi|365222890|gb|AEW69797.1| (e_value=2e-36) Hop-interacting protein THI034 [Solanum lycopersicum];; (*TAIR) AT1G24090.1 (e_value=4e-22) | Symbols: | RNase H family protein | chr1:8520834-8522737 FORWARD LENGTH=353;; (*ITAG) Solyc02g087130.2.1 (e_value=3e-39) genomic_reference:SL2.40ch02 gene_region:44207285-44214013 transcript_region:SL2.40ch02:44207285..44214013+ go_terms:GO:0003676,GO:0004523 functional_description:"Phosphoglycerate mutase (AHRD V1 *--- C3JIP8_RHOER); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00035896g0002.1 protein NbS00041703g0004.1 protein ; (*GB) gi|297833180|ref|XP_002884472.1| (e_value=6e-17) pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G04820.1 (e_value=1e-18) | Symbols: | Pseudouridine synthase family protein | chr3:1321453-1325949 REVERSE LENGTH=715;; (*ITAG) Solyc01g097590.2.1 (e_value=5e-49) genomic_reference:SL2.40ch01 gene_region:80136686-80143704 transcript_region:SL2.40ch01:80136686..80143704- go_terms:GO:0009451 functional_description:"Pseudouridine synthase (AHRD V1 ***- A6ZP82_YEAS7); contains Interpro domain(s) IPR001656 Pseudouridine synthase, TruD "; GO:0009451 NbS00008559g0001.1 protein ; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=8e-16) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc03g082790.2.1 (e_value=4e-19) genomic_reference:SL2.40ch03 gene_region:46195532-46196454 transcript_region:SL2.40ch03:46195532..46196454- functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbS00008559g0006.1 protein ; (*GB) gi|350536197|ref|NP_001233978.1| (e_value=2e-20) extensin-like protein Dif54 precursor [Solanum lycopersicum];; (*ITAG) Solyc01g005850.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:575510-576400 transcript_region:SL2.40ch01:575510..576400+ functional_description:"Extensin-like protein Dif54 (AHRD V1 *-*- Q43505_SOLLC)"; NbC24921494g0001.1 protein ; (*GB) gi|147806293|emb|CAN76555.1| (e_value=2e-82) hypothetical protein VITISV_011396 [Vitis vinifera];; (*SWP) sp|Q8S8L9|Y2245_ARATH (e_value=9e-78) Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1;; (*TAIR) AT2G32450.1 (e_value=7e-79) | Symbols: | Calcium-binding tetratricopeptide family protein | chr2:13778614-13781022 FORWARD LENGTH=802;; (*ITAG) Solyc04g081050.1.1 (e_value=1e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00020955g0103.1 protein NbS00020955g0104.1 protein NbS00050729g0001.1 protein NbC24429876g0001.1 protein ; (*GB) gi|15241815|ref|NP_195863.1| (e_value=8e-15) transducin/WD40 domain-containing protein [Arabidopsis thaliana];; (*TAIR) AT5G02430.1 (e_value=2e-17) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:526592-529839 FORWARD LENGTH=905;; (*ITAG) Solyc09g010720.2.1 (e_value=6e-42) genomic_reference:SL2.40ch09 gene_region:4029691-4033379 transcript_region:SL2.40ch09:4029691..4033379- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 ***- D7LKF0_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00045604g0002.1 protein NbS00037024g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021556g0002.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=1e-29) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00039254g0001.1 protein NbS00042468g0002.1 protein NbS00007039g0001.1 protein NbS00060446g0001.1 protein NbS00018845g0001.1 protein ; (*GB) gi|296090005|emb|CBI39824.3| (e_value=8e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-12) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=4e-19) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=9e-17) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbC24749394g0001.1 protein ; (*GB) gi|359476073|ref|XP_002281904.2| (e_value=6e-83) PREDICTED: uncharacterized protein LOC100247424 [Vitis vinifera];; (*TAIR) AT2G25660.1 (e_value=6e-76) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067850.2.1 (e_value=2e-113) genomic_reference:SL2.40ch08 gene_region:54091438-54109140 transcript_region:SL2.40ch08:54091438..54109140- functional_description:"Homology to unknown gene (AHRD V1 **-- Q016Y8_OSTTA); contains Interpro domain(s) IPR007452 Protein of unknown function DUF490 "; NbS00034019g0002.1 protein NbS00009874g0001.1 protein NbS00000767g0002.1 protein NbS00017879g0001.1 protein ; (*GB) gi|147802086|emb|CAN65964.1| (e_value=3e-39) hypothetical protein VITISV_040484 [Vitis vinifera];; (*SWP) sp|P57681|PCYOX_ARATH (e_value=5e-33) Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1;; (*TAIR) AT5G63910.1 (e_value=4e-34) | Symbols: FCLY | farnesylcysteine lyase | chr5:25572053-25574077 REVERSE LENGTH=500;; (*ITAG) Solyc12g088020.1.1 (e_value=3e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61969217-61970695 transcript_region:SL2.40ch12:61969217..61970695+ go_terms:GO:0001735 functional_description:"Prenylcysteine oxidase 1 (AHRD V1 **** B7ZTK4_XENTR); contains Interpro domain(s) IPR010795 Prenylcysteine lyase "; GO:0001735 NbS00017879g0002.1 protein NbS00041676g0001.1 protein NbS00018064g0001.1 protein NbC23737687g0001.1 protein ; (*GB) gi|13873336|dbj|BAB44156.1| (e_value=2e-45) dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorhiza];; (*SWP) sp|Q9M5K2|DLDH2_ARATH (e_value=2e-43) Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1;; (*TAIR) AT3G17240.3 (e_value=2e-44) | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5890278-5892166 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=5e-48) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00007739g0002.1 protein NbS00007739g0101.1 protein NbS00007774g0003.1 protein ; (*GB) gi|357473587|ref|XP_003607078.1| (e_value=6e-54) hypothetical protein MTR_4g072040 [Medicago truncatula];; (*SWP) sp|P73467|Y1223_SYNY3 (e_value=2e-34) Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1223 PE=3 SV=2;; (*TAIR) AT2G21280.1 (e_value=4e-53) | Symbols: GC1, ATSULA, SULA | NAD(P)-binding Rossmann-fold superfamily protein | chr2:9110502-9112679 REVERSE LENGTH=347;; (*ITAG) Solyc09g091970.2.1 (e_value=2e-59) genomic_reference:SL2.40ch09 gene_region:66512976-66517268 transcript_region:SL2.40ch09:66512976..66517268- go_terms:GO:0005515 functional_description:"NAD-binding domain 4 protein (AHRD V1 **** D5D7M5_ECOKI); contains Interpro domain(s) IPR010099 Sugar nucleotide epimerase YfcH, putative "; GO:0005515 NbC24075527g0001.1 protein ; (*ITAG) Solyc08g007350.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1917705-1918412 transcript_region:SL2.40ch08:1917705..1918412- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease (AHRD V1 *-*- B0WTA6_CULQU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbC23148609g0001.1 protein ; (*GB) gi|297601802|ref|NP_001051520.2| (e_value=1e-34) Os03g0791500 [Oryza sativa Japonica Group];; (*SWP) sp|Q94AU2|SEC22_ARATH (e_value=2e-33) 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1;; (*TAIR) AT1G11890.1 (e_value=1e-34) | Symbols: SEC22, ATSEC22 | Synaptobrevin family protein | chr1:4011509-4012835 FORWARD LENGTH=218;; (*ITAG) Solyc12g049420.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46439513-46443233 transcript_region:SL2.40ch12:46439513..46443233- go_terms:GO:0005484 functional_description:"Protein transport protein Sec22 (AHRD V1 **-- B0CRV5_LACBS); contains Interpro domain(s) IPR010908 Longin "; GO:0005484 NbS00062038g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-23) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=7e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbC23766265g0001.1 protein ; (*GB) gi|4768916|gb|AAD29679.1|AF133209_1 (e_value=2e-25) CLC-Nt2 protein [Nicotiana tabacum];; (*SWP) sp|P92941|CLCA_ARATH (e_value=5e-18) Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2;; (*TAIR) AT5G40890.1 (e_value=4e-19) | Symbols: ATCLC-A, CLC-A, CLCA, ATCLCA | chloride channel A | chr5:16381645-16384999 REVERSE LENGTH=775;; (*ITAG) Solyc02g068080.2.1 (e_value=4e-26) genomic_reference:SL2.40ch02 gene_region:32703505-32707626 transcript_region:SL2.40ch02:32703505..32707626- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00043758g0001.1 protein NbS00013275g0001.1 protein NbS00014867g0001.1 protein NbS00002385g0001.1 protein ; (*GB) gi|8777512|dbj|BAA97100.1| (e_value=2e-63) bZIP transcriptional activator RSG [Nicotiana tabacum];; (*SWP) sp|Q9MA75|VIP1_ARATH (e_value=4e-24) Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1;; (*TAIR) AT1G43700.1 (e_value=3e-25) | Symbols: VIP1, SUE3 | VIRE2-interacting protein 1 | chr1:16484352-16486017 FORWARD LENGTH=341;; (*ITAG) Solyc04g071160.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:55672435-55678715 transcript_region:SL2.40ch04:55672435..55678715- go_terms:GO:0042802 functional_description:"BZIP transcription factor family protein (AHRD V1 *-*- D7LF63_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0042802 NbS00044249g0004.1 protein NbS00003526g0003.1 protein ; (*GB) gi|2244989|emb|CAB10410.1| (e_value=9e-33) naringenin 3-dioxygenase like protein [Arabidopsis thaliana];; (*TAIR) AT4G16330.1 (e_value=3e-35) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9226298-9227235 REVERSE LENGTH=258;; (*ITAG) Solyc10g005120.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:104397-108110 transcript_region:SL2.40ch10:104397..108110+ go_terms:GO:0016706,GO:0016682 functional_description:"Flavanone 3-hydroxylase (AHRD V1 **-- Q5XPX2_GINBI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00003235g0001.1 protein ; (*GB) gi|29420805|dbj|BAC66624.1| (e_value=1e-12) F-box [Prunus mume];; (*SWP) sp|Q8GXC7|FBK50_ARATH (e_value=1e-11) F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1;; (*TAIR) AT3G06240.1 (e_value=8e-13) | Symbols: | F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427;; (*ITAG) Solyc07g044920.1.1 (e_value=6e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:55293207-55294304 transcript_region:SL2.40ch07:55293207..55294304+ functional_description:"F-box (AHRD V1 **-- Q84KQ9_PRUMU); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003235g0002.1 protein NbS00000970g0102.1 protein NbS00000970g0105.1 protein NbS00004724g0002.1 protein ; (*GB) gi|297743996|emb|CBI36966.3| (e_value=2e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SIC9|PP178_ARATH (e_value=2e-54) Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1;; (*TAIR) AT2G31400.1 (e_value=1e-55) | Symbols: GUN1 | genomes uncoupled 1 | chr2:13387201-13390550 REVERSE LENGTH=918;; (*ITAG) Solyc06g009520.2.1 (e_value=5e-110) genomic_reference:SL2.40ch06 gene_region:3498359-3503631 transcript_region:SL2.40ch06:3498359..3503631- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00004724g0003.1 protein ; (*GB) gi|225437600|ref|XP_002271180.1| (e_value=6e-71) PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9SIC9|PP178_ARATH (e_value=1e-55) Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1;; (*TAIR) AT2G31400.1 (e_value=9e-57) | Symbols: GUN1 | genomes uncoupled 1 | chr2:13387201-13390550 REVERSE LENGTH=918;; (*ITAG) Solyc06g009520.2.1 (e_value=2e-89) genomic_reference:SL2.40ch06 gene_region:3498359-3503631 transcript_region:SL2.40ch06:3498359..3503631- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LDK6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbC24140330g0001.1 protein ; (*GB) gi|149926196|ref|ZP_01914458.1| (e_value=3e-76) Outer membrane protein [Limnobacter sp. MED105]; NbS00004341g0001.1 protein NbS00013336g0001.1 protein ; (*ITAG) Solyc01g091080.2.1 (e_value=5e-13) genomic_reference:SL2.40ch01 gene_region:76559722-76569026 transcript_region:SL2.40ch01:76559722..76569026- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone D (AHRD V1 **** C0H9S8_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00030261g0001.1 protein ; (*GB) gi|224088414|ref|XP_002308446.1| (e_value=3e-39) predicted protein [Populus trichocarpa]; NbS00008550g0001.1 protein ; (*GB) gi|255565278|ref|XP_002523631.1| (e_value=1e-74) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17070.1 (e_value=6e-48) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7430863-7431654 REVERSE LENGTH=263;; (*ITAG) Solyc02g083120.1.1 (e_value=2e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41214861-41215814 transcript_region:SL2.40ch02:41214861..41215814+ functional_description:"CM0216.240.nc protein (AHRD V1 ***- B0BLH5_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00014104g0101.1 protein NbS00048870g0001.1 protein NbS00047063g0001.1 protein NbS00047063g0002.1 protein NbC24566602g0001.1 protein ; (*GB) gi|147838879|emb|CAN63666.1| (e_value=2e-67) hypothetical protein VITISV_013183 [Vitis vinifera];; (*SWP) sp|Q94AI4|METL1_ARATH (e_value=2e-40) Methyltransferase-like protein 1 OS=Arabidopsis thaliana GN=EMB1691 PE=1 SV=1;; (*TAIR) AT4G09980.2 (e_value=2e-41) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6249111-6252030 REVERSE LENGTH=775;; (*ITAG) Solyc05g056220.2.1 (e_value=7e-71) genomic_reference:SL2.40ch05 gene_region:64723434-64730469 transcript_region:SL2.40ch05:64723434..64730469- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00005087g0003.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-12) hypothetical protein [Cucumis melo subsp. melo]; NbS00003833g0003.1 protein NbS00005209g0002.1 protein NbS00008242g0001.1 protein NbS00008242g0003.1 protein ; (*GB) gi|356522460|ref|XP_003529864.1| (e_value=0.0) PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max];; (*SWP) sp|Q0JLS6|RHD3_ORYSJ (e_value=1e-168) Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1;; (*TAIR) AT3G13870.1 (e_value=8e-169) | Symbols: RHD3 | Root hair defective 3 GTP-binding protein (RHD3) | chr3:4565762-4571109 REVERSE LENGTH=802;; (*ITAG) Solyc12g044900.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:45698218-45706936 transcript_region:SL2.40ch12:45698218..45706936+ functional_description:"Protein SEY1 (AHRD V1 ***- B6U4D9_MAIZE); contains Interpro domain(s) IPR008803 Root hair defective 3 GTP-binding "; NbS00022073g0001.1 protein ; (*ITAG) Solyc09g009350.2.1 (e_value=7e-14) genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)"; NbS00010815g0002.1 protein NbS00010815g0004.1 protein NbC25388330g0001.1 protein ; (*GB) gi|356554903|ref|XP_003545781.1| (e_value=2e-46) PREDICTED: signal recognition particle 54 kDa protein 2-like [Glycine max];; (*SWP) sp|P49972|SR542_SOLLC (e_value=9e-47) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.2 (e_value=2e-46) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc12g042740.1.1 (e_value=6e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00044318g0002.1 protein NbS00032025g0101.1 protein NbS00039996g0001.1 protein ; (*GB) gi|359480059|ref|XP_002269886.2| (e_value=6e-40) PREDICTED: uncharacterized protein LOC100249779 [Vitis vinifera];; (*TAIR) AT5G32470.1 (e_value=9e-25) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc09g064510.2.1 (e_value=6e-58) genomic_reference:SL2.40ch09 gene_region:57382052-57386217 transcript_region:SL2.40ch09:57382052..57386217+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- Q117V2_TRIEI); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00039996g0002.1 protein ; (*GB) gi|224158475|ref|XP_002337976.1| (e_value=8e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5Z1|EIF3B_ARATH (e_value=5e-68) Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1;; (*TAIR) AT5G27640.1 (e_value=4e-69) | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712;; (*ITAG) Solyc01g088370.2.1 (e_value=1e-77) genomic_reference:SL2.40ch01 gene_region:74897598-74903074 transcript_region:SL2.40ch01:74897598..74903074+ go_terms:GO:0032947,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit B (AHRD V1 **** B2VZ72_PYRTR); contains Interpro domain(s) IPR011400 Translation initiation factor eIF-3b "; GO:0032947,GO:0003743 NbS00039996g0003.1 protein ; (*GB) gi|343171870|gb|AEL98639.1| (e_value=8e-51) putative translation initiation factor 3 subunit B, partial [Silene latifolia];; (*SWP) sp|Q9C5Z1|EIF3B_ARATH (e_value=1e-47) Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1;; (*TAIR) AT5G25780.1 (e_value=8e-49) | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic translation initiation factor 3B-2 | chr5:8973420-8976758 REVERSE LENGTH=714;; (*ITAG) Solyc01g088370.2.1 (e_value=1e-54) genomic_reference:SL2.40ch01 gene_region:74897598-74903074 transcript_region:SL2.40ch01:74897598..74903074+ go_terms:GO:0032947,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit B (AHRD V1 **** B2VZ72_PYRTR); contains Interpro domain(s) IPR011400 Translation initiation factor eIF-3b "; GO:0032947,GO:0003743 NbS00027128g0001.1 protein NbS00000485g0003.1 protein NbS00024174g0001.1 protein NbS00050957g0002.1 protein ; (*GB) gi|2462134|emb|CAA73798.1| (e_value=1e-14) reverse transcriptase [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=1e-13) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00002056g0001.1 protein NbS00021685g0001.1 protein ; (*GB) gi|359484957|ref|XP_002264416.2| (e_value=2e-81) PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Vitis vinifera];; (*SWP) sp|Q8L7Z0|CNG17_ARATH (e_value=2e-57) Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1;; (*TAIR) AT4G30360.1 (e_value=1e-58) | Symbols: ATCNGC17, CNGC17 | cyclic nucleotide-gated channel 17 | chr4:14855060-14857779 REVERSE LENGTH=720;; (*ITAG) Solyc07g006510.2.1 (e_value=2e-116) genomic_reference:SL2.40ch07 gene_region:1308919-1317697 transcript_region:SL2.40ch07:1308919..1317697+ go_terms:GO:0005216,GO:0030551 functional_description:"Cyclic nucleotide-gated ion channel 18 (AHRD V1 **** D7M6N7_ARALY); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005216,GO:0030551 NbS00040481g0002.1 protein NbS00040481g0004.1 protein NbS00040481g0005.1 protein NbS00022335g0002.1 protein ; (*GB) gi|224141469|ref|XP_002324094.1| (e_value=2e-41) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q8GWT1|GAUTE_ARATH (e_value=2e-40) Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1;; (*TAIR) AT5G15470.1 (e_value=2e-41) | Symbols: GAUT14 | galacturonosyltransferase 14 | chr5:5021433-5024168 REVERSE LENGTH=532;; (*ITAG) Solyc02g067060.2.1 (e_value=6e-44) genomic_reference:SL2.40ch02 gene_region:31872754-31878126 transcript_region:SL2.40ch02:31872754..31878126- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00024306g0001.1 protein NbS00024306g0002.1 protein NbS00033173g0001.1 protein ; (*GB) gi|224129660|ref|XP_002328771.1| (e_value=1e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93W20|NIFU2_ARATH (e_value=1e-29) NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1;; (*TAIR) AT5G49940.1 (e_value=8e-31) | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | chr5:20315464-20317228 FORWARD LENGTH=235;; (*ITAG) Solyc01g103710.2.1 (e_value=6e-36) genomic_reference:SL2.40ch01 gene_region:84025720-84029325 transcript_region:SL2.40ch01:84025720..84029325+ go_terms:GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_BUCCC); contains Interpro domain(s) IPR001075 NIF system FeS cluster assembly, NifU, C-terminal "; GO:0005198 NbS00025339g0001.1 protein NbS00014098g0003.1 protein NbS00016121g0001.1 protein ; (*GB) gi|225453098|ref|XP_002271519.1| (e_value=2e-24) PREDICTED: ell-associated factor Eaf isoform 2 [Vitis vinifera];; (*TAIR) AT1G71080.1 (e_value=7e-19) | Symbols: | RNA polymerase II transcription elongation factor | chr1:26809987-26811645 REVERSE LENGTH=326;; (*ITAG) Solyc02g091270.2.1 (e_value=1e-33) genomic_reference:SL2.40ch02 gene_region:47195986-47199820 transcript_region:SL2.40ch02:47195986..47199820+ functional_description:"ELL-associated factor 1 (AHRD V1 *-*- B0WGU2_CULQU); contains Interpro domain(s) IPR019194 ELL-associated factor "; NbC25045272g0001.1 protein ; (*GB) gi|356510080|ref|XP_003523768.1| (e_value=9e-32) PREDICTED: symplekin-like [Glycine max];; (*TAIR) AT1G27595.1 (e_value=2e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961;; (*ITAG) Solyc04g076910.2.1 (e_value=5e-82) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00020699g0003.1 protein NbS00017786g0003.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=8e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00017786g0007.1 protein NbS00004393g0001.1 protein NbS00004979g0001.1 protein NbS00001418g0001.1 protein NbS00001418g0005.1 protein NbS00001418g0006.1 protein NbS00001418g0007.1 protein NbS00001857g0004.1 protein ; (*ITAG) Solyc10g076970.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59236244-59239086 transcript_region:SL2.40ch10:59236244..59239086+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001857g0006.1 protein ; (*GB) gi|224141275|ref|XP_002324000.1| (e_value=2e-106) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SNB7|PP264_ARATH (e_value=5e-81) Pentatricopeptide repeat-containing protein At3g46610 OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1;; (*TAIR) AT3G46610.1 (e_value=4e-82) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr3:17160224-17162221 REVERSE LENGTH=665;; (*ITAG) Solyc02g093620.1.1 (e_value=2e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:48994052-48996280 transcript_region:SL2.40ch02:48994052..48996280+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M6I3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00030042g0004.1 protein NbS00046225g0001.1 protein NbC26129329g0001.1 protein ; (*GB) gi|255541558|ref|XP_002511843.1| (e_value=2e-31) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT2G45850.2 (e_value=3e-15) | Symbols: | AT hook motif DNA-binding family protein | chr2:18871901-18873457 REVERSE LENGTH=348;; (*ITAG) Solyc01g094460.2.1 (e_value=5e-70) genomic_reference:SL2.40ch01 gene_region:77689811-77694407 transcript_region:SL2.40ch01:77689811..77694407- go_terms:GO:0003677,GO:0006355 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 ***- O04696_PEA); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006355 NbS00021095g0003.1 protein NbS00006117g0002.1 protein NbS00006507g0104.1 protein NbS00050648g0001.1 protein NbS00053258g0001.1 protein NbS00036133g0001.1 protein ; (*GB) gi|224119770|ref|XP_002318158.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G26890.5 (e_value=2e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9907456-9910463 REVERSE LENGTH=649;; (*ITAG) Solyc03g097710.2.1 (e_value=3e-44) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00012636g0001.1 protein NbS00030255g0001.1 protein NbC24526566g0001.1 protein ; (*GB) gi|219887699|gb|ACL54224.1| (e_value=1e-50) unknown [Zea mays];; (*SWP) sp|Q0J9X2|ROC2_ORYSJ (e_value=6e-47) Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1;; (*TAIR) AT1G05230.3 (e_value=9e-47) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=719;; (*ITAG) Solyc03g031760.2.1 (e_value=1e-48) genomic_reference:SL2.40ch03 gene_region:8510446-8514148 transcript_region:SL2.40ch03:8510446..8514148- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-14 (AHRD V1 *-*- ATB14_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00016163g0003.1 protein ; (*GB) gi|307136305|gb|ADN34129.1| (e_value=7e-56) high mobility group family [Cucumis melo subsp. melo];; (*SWP) sp|Q9SGS2|HMGB9_ARATH (e_value=2e-53) High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1;; (*TAIR) AT1G76110.1 (e_value=1e-54) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:28555287-28557465 REVERSE LENGTH=338;; (*ITAG) Solyc12g094440.1.1 (e_value=8e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62989670-62995019 transcript_region:SL2.40ch12:62989670..62995019- go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00021406g0004.1 protein NbS00043568g0001.1 protein ; (*GB) gi|224135325|ref|XP_002322040.1| (e_value=1e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49040.1 (e_value=4e-76) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18139419-18148826 REVERSE LENGTH=1187;; (*ITAG) Solyc03g119650.2.1 (e_value=4e-100) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00046680g0001.1 protein NbC23469452g0001.1 protein ; (*GB) gi|255552969|ref|XP_002517527.1| (e_value=1e-33) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=8e-27) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=6e-28) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=6e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00009917g0002.1 protein ; (*ITAG) Solyc04g079910.2.1 (e_value=1e-18) genomic_reference:SL2.40ch04 gene_region:61818808-61820555 transcript_region:SL2.40ch04:61818808..61820555- functional_description:"Coiled-coil domain-containing protein 109A (AHRD V1 *--- C109A_MOUSE); contains Interpro domain(s) IPR006769 Protein of unknown function DUF607 "; NbC24103440g0001.1 protein ; (*GB) gi|293331403|ref|NP_001169536.1| (e_value=3e-39) uncharacterized protein LOC100383412 [Zea mays];; (*SWP) sp|O74378|ODO1_SCHPO (e_value=1e-29) 2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kgd1 PE=2 SV=1;; (*TAIR) AT3G55410.1 (e_value=1e-40) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=5e-41) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00011210g0001.1 protein NbS00011210g0002.1 protein NbS00022042g0001.1 protein NbS00022042g0002.1 protein NbC24511048g0001.1 protein ; (*GB) gi|1773014|emb|CAA71369.1| (e_value=2e-80) chloride channel Stclc1 [Solanum tuberosum];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=6e-55) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=5e-56) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc10g044470.1.1 (e_value=2e-82) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21959526-21966277 transcript_region:SL2.40ch10:21959526..21966277+ go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00008518g0001.1 protein NbS00017949g0003.1 protein NbS00050916g0002.1 protein ; (*GB) gi|356576833|ref|XP_003556534.1| (e_value=3e-31) PREDICTED: syntaxin-43-like [Glycine max];; (*SWP) sp|O65359|SYP41_ARATH (e_value=1e-30) Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1;; (*TAIR) AT5G26980.2 (e_value=1e-31) | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of plants 41 | chr5:9488724-9490604 REVERSE LENGTH=322;; (*ITAG) Solyc09g075530.2.1 (e_value=5e-56) genomic_reference:SL2.40ch09 gene_region:62727047-62731274 transcript_region:SL2.40ch09:62727047..62731274+ go_terms:GO:0005484 functional_description:"Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) (AHRD V1 **** D7G2Z0_ECTSI); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00013488g0003.1 protein ; (*GB) gi|255588792|ref|XP_002534720.1| (e_value=6e-19) conserved hypothetical protein [Ricinus communis]; NbS00013488g0004.1 protein NbS00013488g0007.1 protein NbS00055887g0001.1 protein ; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=1e-38) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=3e-32) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=3e-33) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbC23288956g0001.1 protein ; (*GB) gi|225450539|ref|XP_002277347.1| (e_value=5e-29) PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera];; (*SWP) sp|O81767|PP348_ARATH (e_value=2e-15) Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2;; (*TAIR) AT4G33990.1 (e_value=1e-16) | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:16290141-16292612 REVERSE LENGTH=823;; (*ITAG) Solyc01g100790.1.1 (e_value=5e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82491910-82494147 transcript_region:SL2.40ch01:82491910..82494147+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00039093g0002.1 protein ; (*ITAG) Solyc00g020540.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:11859518-11861913 transcript_region:SL2.40ch00:11859518..11861913+ functional_description:"Aminotransferase-like protein (AHRD V1 *-*- Q6EQM2_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00019821g0002.1 protein ; (*GB) gi|224059548|ref|XP_002299901.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g065490.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48011022-48019767 transcript_region:SL2.40ch11:48011022..48019767- functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q015C3_OSTTA)"; NbS00025867g0001.1 protein NbS00030015g0001.1 protein NbS00008671g0002.1 protein NbS00021005g0002.1 protein NbS00021005g0005.1 protein NbS00021005g0006.1 protein NbS00008374g0002.1 protein NbS00009973g0002.1 protein ; (*GB) gi|356501867|ref|XP_003519745.1| (e_value=2e-51) PREDICTED: histone-lysine N-methyltransferase EZA1-like [Glycine max];; (*SWP) sp|Q9ZSM8|EZA1_ARATH (e_value=2e-46) Histone-lysine N-methyltransferase EZA1 OS=Arabidopsis thaliana GN=EZA1 PE=2 SV=1;; (*TAIR) AT4G02020.1 (e_value=1e-47) | Symbols: EZA1, SWN, SDG10 | SET domain-containing protein | chr4:886693-891743 FORWARD LENGTH=856;; (*ITAG) Solyc01g079390.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:70975487-70990999 transcript_region:SL2.40ch01:70975487..70990999+ go_terms:GO:0005515,GO:0003700 functional_description:"Histone-lysine N-methyltransferase MEDEA (AHRD V1 *--- MEDEA_ARATH); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003700 NbS00027955g0003.1 protein NbS00008231g0001.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=8e-29) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00048537g0002.1 protein NbS00039181g0001.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=8e-27) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=7e-26) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=7e-37) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00001221g0001.1 protein ; (*GB) gi|356527171|ref|XP_003532186.1| (e_value=6e-43) PREDICTED: uncharacterized protein LOC100819024 [Glycine max];; (*TAIR) AT5G55960.1 (e_value=2e-41) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:22662726-22664762 FORWARD LENGTH=648;; (*ITAG) Solyc12g015810.1.1 (e_value=3e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5807186-5809127 transcript_region:SL2.40ch12:5807186..5809127- functional_description:"Genomic DNA chromosome 5 P1 clone MYN21 (AHRD V1 **-- Q9FG69_ARATH)"; NbC23724496g0001.1 protein ; (*GB) gi|224099555|ref|XP_002311531.1| (e_value=4e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7S4|MP702_ARATH (e_value=2e-14) Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1;; (*TAIR) AT1G24764.1 (e_value=1e-15) | Symbols: ATMAP70-2, MAP70-2 | microtubule-associated proteins 70-2 | chr1:8760001-8763256 REVERSE LENGTH=634;; (*ITAG) Solyc05g017980.2.1 (e_value=3e-22) genomic_reference:SL2.40ch05 gene_region:19336286-19343775 transcript_region:SL2.40ch05:19336286..19343775+ go_terms:GO:0008017 functional_description:"microtubule associated protein Type 1 (AHRD V1 **-* Q9C9X0_ARATH); contains Interpro domain(s) IPR009768 Myosin II heavy chain-like "; GO:0008017 NbS00012975g0001.1 protein NbS00039287g0001.1 protein NbS00006857g0003.1 protein NbS00040749g0001.1 protein ; (*GB) gi|225451827|ref|XP_002278111.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100242960 [Vitis vinifera];; (*TAIR) AT5G38880.1 (e_value=4e-168) | Symbols: | unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr5:15563621-15568804 REVERSE LENGTH=796;; (*ITAG) Solyc03g046590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:17160415-17182028 transcript_region:SL2.40ch03:17160415..17182028- functional_description:"Genomic DNA chromosome 5 TAC clone K15E6 (AHRD V1 ***- Q9FMB4_ARATH)"; NbS00019045g0002.1 protein NbS00009143g0005.1 protein NbS00000022g0001.1 protein ; (*ITAG) Solyc09g091190.2.1 (e_value=3e-19) genomic_reference:SL2.40ch09 gene_region:65856500-65861321 transcript_region:SL2.40ch09:65856500..65861321- go_terms:GO:0003713 functional_description:"Inhibitor of growth protein 5 (AHRD V1 *-*- B6T7N2_MAIZE); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003713 NbC24649255g0001.1 protein ; (*GB) gi|255572244|ref|XP_002527061.1| (e_value=4e-124) Protein AFR, putative [Ricinus communis];; (*SWP) sp|Q93W93|FBK22_ARATH (e_value=2e-118) F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1;; (*TAIR) AT1G55270.1 (e_value=1e-119) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:20618333-20619925 REVERSE LENGTH=434;; (*ITAG) Solyc01g005970.2.1 (e_value=2e-132) genomic_reference:SL2.40ch01 gene_region:642518-647246 transcript_region:SL2.40ch01:642518..647246+ go_terms:GO:0003779 functional_description:"Kelch-like protein 3 (AHRD V1 *-*- KLHL3_PONAB); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0003779 NbS00007755g0001.1 protein NbS00030281g0001.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=5e-15) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=4e-27) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00051620g0001.1 protein ; (*GB) gi|225437846|ref|XP_002263743.1| (e_value=2e-22) PREDICTED: CDT1-like protein a, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SJW9|CDT1A_ARATH (e_value=2e-14) CDT1-like protein a, chloroplastic OS=Arabidopsis thaliana GN=CDT1A PE=1 SV=1;; (*TAIR) AT2G31270.1 (e_value=2e-15) | Symbols: ATCDT1A, CDT1A, CDT1 | homolog of yeast CDT1 A | chr2:13329037-13331544 FORWARD LENGTH=571;; (*ITAG) Solyc06g008510.2.1 (e_value=1e-40) genomic_reference:SL2.40ch06 gene_region:2402505-2405642 transcript_region:SL2.40ch06:2402505..2405642+ go_terms:GO:0005515,GO:0004693 functional_description:"CDT1a protein (AHRD V1 ***- Q710F0_ARATH); contains Interpro domain(s) IPR014939 DNA replication factor CDT1-like "; GO:0005515,GO:0004693 NbS00030192g0002.1 protein ; (*GB) gi|49523569|emb|CAF18246.1| (e_value=2e-23) STY-L protein [Antirrhinum majus];; (*SWP) sp|Q9FUY2|LEUNG_ARATH (e_value=5e-14) Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2;; (*TAIR) AT2G32700.7 (e_value=7e-23) | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=806;; (*ITAG) Solyc09g061290.2.1 (e_value=8e-29) genomic_reference:SL2.40ch09 gene_region:54200071-54207040 transcript_region:SL2.40ch09:54200071..54207040- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00014032g0201.1 protein NbS00011444g0001.1 protein NbS00033267g0001.1 protein NbS00003785g0101.1 protein NbS00017101g0005.1 protein ; (*GB) gi|365222926|gb|AEW69815.1| (e_value=4e-29) Hop-interacting protein THI116 [Solanum lycopersicum];; (*SWP) sp|Q4V3D6|FLOT2_ARATH (e_value=2e-24) Flotillin-like protein 2 OS=Arabidopsis thaliana GN=FLOT2 PE=2 SV=1;; (*TAIR) AT5G25260.1 (e_value=1e-25) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8752751-8754282 FORWARD LENGTH=463;; (*ITAG) Solyc03g117250.2.1 (e_value=1e-31) genomic_reference:SL2.40ch03 gene_region:60489302-60492373 transcript_region:SL2.40ch03:60489302..60492373- functional_description:"Flotillin 1 (AHRD V1 *-*- B3V5K3_9EURY); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00040325g0001.1 protein ; (*GB) gi|147819530|emb|CAN65354.1| (e_value=4e-15) hypothetical protein VITISV_012645 [Vitis vinifera]; NbS00021039g0006.1 protein NbC23590977g0001.1 protein ; (*GB) gi|357480475|ref|XP_003610523.1| (e_value=1e-31) Ubiquitin [Medicago truncatula];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=2e-29) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=2e-30) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=4e-38) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00003611g0101.1 protein NbS00003611g0201.1 protein NbS00003611g0301.1 protein NbS00003611g0304.1 protein NbS00003611g0305.1 protein NbS00016225g0001.1 protein NbC23265540g0001.1 protein ; (*GB) gi|356554785|ref|XP_003545723.1| (e_value=9e-15) PREDICTED: phospholipid-transporting ATPase 1-like [Glycine max];; (*SWP) sp|P98204|ALA1_ARATH (e_value=4e-13) Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1;; (*TAIR) AT5G04930.1 (e_value=3e-14) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158;; (*ITAG) Solyc01g096930.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:79693945-79699772 transcript_region:SL2.40ch01:79693945..79699772+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbC25400498g0001.1 protein ; (*GB) gi|356531090|ref|XP_003534111.1| (e_value=5e-34) PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max];; (*SWP) sp|Q9LD37|CNG20_ARATH (e_value=1e-25) Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1;; (*TAIR) AT3G17700.1 (e_value=8e-27) | Symbols: CNBT1, CNGC20, ATCNGC20 | cyclic nucleotide-binding transporter 1 | chr3:6049074-6052449 FORWARD LENGTH=764;; (*ITAG) Solyc03g098210.2.1 (e_value=5e-76) genomic_reference:SL2.40ch03 gene_region:54006686-54020551 transcript_region:SL2.40ch03:54006686..54020551- go_terms:GO:0004497,GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like "; GO:0004497,GO:0030551 NbS00061215g0001.1 protein NbS00061215g0002.1 protein NbS00030444g0003.1 protein NbS00053969g0001.1 protein NbS00000033g0001.1 protein ; (*ITAG) Solyc12g014490.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5460179-5464117 transcript_region:SL2.40ch12:5460179..5464117+ functional_description:"Microtubule-associated protein MAP65-1c (AHRD V1 ***- Q9FEV7_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; NbS00016890g0103.1 protein NbC24334531g0001.1 protein ; (*ITAG) Solyc08g044390.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31808013-31809605 transcript_region:SL2.40ch08:31808013..31809605- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00018771g0002.1 protein NbS00014818g0001.1 protein ; (*GB) gi|225466109|ref|XP_002266677.1| (e_value=3e-37) PREDICTED: putative glycerol-3-phosphate transporter 1 [Vitis vinifera];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=4e-36) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=3e-37) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=9e-44) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00007515g0001.1 protein NbC24747126g0001.1 protein ; (*GB) gi|358248040|ref|NP_001239798.1| (e_value=1e-16) uncharacterized protein LOC100807968 [Glycine max];; (*SWP) sp|O04397|FENR2_TOBAC (e_value=1e-17) Ferredoxin--NADP reductase, root-type isozyme, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G30510.2 (e_value=1e-17) | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10807150-10808984 REVERSE LENGTH=382;; (*ITAG) Solyc02g024050.2.1 (e_value=3e-20) genomic_reference:SL2.40ch02 gene_region:15568322-15574101 transcript_region:SL2.40ch02:15568322..15574101+ go_terms:GO:0003959 functional_description:"Ferredoxin--NADP reductase (AHRD V1 ***- B9SB31_RICCO); contains Interpro domain(s) IPR012146 Ferredoxin--NADP reductase "; GO:0003959 NbS00037709g0001.1 protein NbS00037709g0003.1 protein NbS00037709g0004.1 protein NbS00019978g0002.1 protein NbC24470699g0001.1 protein NbS00027966g0001.1 protein NbS00013906g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-12) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00002777g0002.1 protein NbS00003453g0004.1 protein ; (*ITAG) Solyc07g025240.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26940367-26940952 transcript_region:SL2.40ch07:26940367..26940952- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9Z8_KALDA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00003453g0202.1 protein NbS00041792g0002.1 protein NbS00009297g0001.1 protein NbC23574182g0001.1 protein ; (*GB) gi|255545656|ref|XP_002513888.1| (e_value=2e-22) splicing endonuclease positive effector sen1, putative [Ricinus communis];; (*ITAG) Solyc04g072840.2.1 (e_value=5e-35) genomic_reference:SL2.40ch04 gene_region:57385581-57387619 transcript_region:SL2.40ch04:57385581..57387619- functional_description:"tRNA-splicing endonuclease positive effector-related protein (AHRD V1 *-*- B2Y4N3_ARAHA)"; NbC24295873g0001.1 protein ; (*GB) gi|224114968|ref|XP_002316905.1| (e_value=6e-62) predicted protein [Populus trichocarpa];; (*TAIR) AT3G15380.1 (e_value=5e-60) | Symbols: | Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700;; (*ITAG) Solyc07g063230.2.1 (e_value=6e-77) genomic_reference:SL2.40ch07 gene_region:62973618-62979170 transcript_region:SL2.40ch07:62973618..62979170+ functional_description:"Choline transporter like family (AHRD V1 ***- C1E2U6_9CHLO); contains Interpro domain(s) IPR007603 Protein of unknown function DUF580 "; NbS00008955g0102.1 protein NbS00009749g0003.1 protein NbS00009711g0001.1 protein ; (*ITAG) Solyc04g053070.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00034922g0001.1 protein ; (*ITAG) Solyc04g079030.2.1 (e_value=2e-46) genomic_reference:SL2.40ch04 gene_region:61220807-61226659 transcript_region:SL2.40ch04:61220807..61226659+ go_terms:GO:0008152 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 *-*- B6TRK5_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00019743g0001.1 protein ; (*GB) gi|189171072|gb|ACD80286.1| (e_value=1e-21) starch synthase I [Oryza officinalis];; (*SWP) sp|A2Y9M4|SSY1_ORYSI (e_value=2e-21) Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1;; (*TAIR) AT5G24300.2 (e_value=1e-20) | Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652;; (*ITAG) Solyc03g083090.2.1 (e_value=1e-24) genomic_reference:SL2.40ch03 gene_region:46453496-46464681 transcript_region:SL2.40ch03:46453496..46464681- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D5MWN9_BACSU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbC25693253g0001.1 protein NbS00006012g0001.1 protein NbS00014403g0002.1 protein NbS00007982g0001.1 protein ; (*ITAG) Solyc05g047650.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:58282178-58282591 transcript_region:SL2.40ch05:58282178..58282591- functional_description:"Unknown Protein (AHRD V1)"; NbS00058488g0001.1 protein ; (*GB) gi|225431211|ref|XP_002272351.1| (e_value=4e-23) PREDICTED: transmembrane and coiled-coil domain-containing protein 4 [Vitis vinifera];; (*TAIR) AT4G36210.2 (e_value=5e-22) | Symbols: | Protein of unknown function (DUF726) | chr4:17130951-17134302 FORWARD LENGTH=516;; (*ITAG) Solyc02g084540.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:42208893-42212859 transcript_region:SL2.40ch02:42208893..42212859+ functional_description:"DUF726 domain-containing protein (AHRD V1 ***- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00000304g0002.1 protein ; (*GB) gi|297613682|gb|ADI48274.1| (e_value=3e-78) uridine cytidine kinase [Carica papaya];; (*SWP) sp|Q8VYB2|UKL3_ARATH (e_value=4e-76) Uridine kinase-like protein 3 OS=Arabidopsis thaliana GN=UKL3 PE=1 SV=1;; (*TAIR) AT1G55810.3 (e_value=3e-77) | Symbols: UKL3 | uridine kinase-like 3 | chr1:20861273-20864003 FORWARD LENGTH=466;; (*ITAG) Solyc07g065890.2.1 (e_value=1e-85) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00017612g0003.1 protein NbS00020703g0002.1 protein NbS00005484g0003.1 protein ; (*GB) gi|171854667|dbj|BAG16523.1| (e_value=5e-22) putative NADPH oxidoreductase [Capsicum chinense];; (*TAIR) AT1G49670.2 (e_value=2e-18) | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=652;; (*ITAG) Solyc01g108150.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:87266478-87282799 transcript_region:SL2.40ch01:87266478..87282799- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase zinc-binding dehydrogenase family protein (AHRD V1 *--- Q22RF9_TETTH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00047522g0002.1 protein NbS00021366g0001.1 protein NbS00008735g0001.1 protein NbS00026726g0004.1 protein NbS00026726g0005.1 protein NbC24525658g0001.1 protein ; (*ITAG) Solyc02g021100.2.1 (e_value=7e-39) genomic_reference:SL2.40ch02 gene_region:12276103-12278400 transcript_region:SL2.40ch02:12276103..12278400- go_terms:GO:0006284,GO:0006281 functional_description:"Methyl-CpG binding domain protein 4 (AHRD V1 *-*- Q3ZBC7_BOVIN); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00032959g0001.1 protein NbS00002061g0002.1 protein NbS00044723g0002.1 protein NbS00007202g0002.1 protein NbS00007202g0003.1 protein NbS00017008g0002.1 protein NbS00017008g0004.1 protein ; (*GB) gi|225443558|ref|XP_002277729.1| (e_value=2e-13) PREDICTED: 28 kDa heat- and acid-stable phosphoprotein isoform 1 [Vitis vinifera];; (*ITAG) Solyc02g077410.2.1 (e_value=3e-17) genomic_reference:SL2.40ch02 gene_region:36930997-36935490 transcript_region:SL2.40ch02:36930997..36935490- functional_description:"heat-and acid-stable phosphoprotein (AHRD V1 *-*- B5X267_SALSA); contains Interpro domain(s) IPR019380 Casein kinase substrate, phosphoprotein PP28 "; NbS00018078g0004.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=3e-14) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=6e-13) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00053470g0001.1 protein NbS00009996g0003.1 protein NbS00006553g0001.1 protein ; (*GB) gi|357166892|ref|XP_003580903.1| (e_value=3e-14) PREDICTED: farnesylcysteine lyase-like [Brachypodium distachyon];; (*ITAG) Solyc12g088020.1.1 (e_value=3e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61969217-61970695 transcript_region:SL2.40ch12:61969217..61970695+ go_terms:GO:0001735 functional_description:"Prenylcysteine oxidase 1 (AHRD V1 **** B7ZTK4_XENTR); contains Interpro domain(s) IPR010795 Prenylcysteine lyase "; GO:0001735 NbS00025148g0002.1 protein NbS00059740g0001.1 protein ; (*GB) gi|170792414|emb|CAP08387.1| (e_value=2e-100) Ppx-GppA phosphatase protein (exopolyphosphatase) [Capsicum annuum];; (*SWP) sp|Q9ZN70|PPX_PSEAE (e_value=6e-22) Exopolyphosphatase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ppx PE=3 SV=1;; (*TAIR) AT1G09195.2 (e_value=1e-50) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). | chr1:2968137-2971457 REVERSE LENGTH=600;; (*ITAG) Solyc01g100260.2.1 (e_value=1e-115) genomic_reference:SL2.40ch01 gene_region:82089176-82095527 transcript_region:SL2.40ch01:82089176..82095527+ functional_description:"Guanosine-5&apos-triphosphate 3&apos-diphosphate pyrophosphatase (AHRD V1 **-- D8MKR7_9ENTR); contains Interpro domain(s) IPR003695 Ppx/GppA phosphatase "; NbS00011457g0001.1 protein NbS00006831g0001.1 protein NbC23216976g0001.1 protein ; (*GB) gi|224085364|ref|XP_002307554.1| (e_value=8e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SHJ3|CALS7_ARATH (e_value=1e-20) Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=3;; (*TAIR) AT1G06490.1 (e_value=1e-21) | Symbols: ATGSL07, gsl07, atgsl7, GSL7 | glucan synthase-like 7 | chr1:1978762-1989295 FORWARD LENGTH=1958;; (*ITAG) Solyc07g056260.2.1 (e_value=7e-31) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00004129g0004.1 protein NbS00022869g0002.1 protein NbS00038671g0002.1 protein ; (*ITAG) Solyc07g005930.2.1 (e_value=3e-13) genomic_reference:SL2.40ch07 gene_region:764089-775345 transcript_region:SL2.40ch07:764089..775345+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9IMA6_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00020231g0001.1 protein NbS00000380g0001.1 protein ; (*GB) gi|12322534|gb|AAG51263.1|AC027135_4 (e_value=5e-15) unknown protein [Arabidopsis thaliana];; (*TAIR) AT1G31480.1 (e_value=2e-16) | Symbols: SGR2 | shoot gravitropism 2 (SGR2) | chr1:11266225-11271527 FORWARD LENGTH=933;; (*ITAG) Solyc01g008320.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:2428752-2446906 transcript_region:SL2.40ch01:2428752..2446906+ go_terms:GO:0008970 functional_description:"DDHD domain containing 1 (AHRD V1 *--- Q3ZAU5_RAT); contains Interpro domain(s) IPR004177 DDHD "; GO:0008970 NbS00016066g0001.1 protein NbS00045081g0001.1 protein ; (*GB) gi|255568367|ref|XP_002525158.1| (e_value=1e-19) Optic atrophy 3 protein, putative [Ricinus communis];; (*TAIR) AT1G28510.1 (e_value=6e-19) | Symbols: | Optic atrophy 3 protein (OPA3) | chr1:10024036-10025939 FORWARD LENGTH=171;; (*ITAG) Solyc07g053490.2.1 (e_value=2e-23) genomic_reference:SL2.40ch07 gene_region:59257198-59261292 transcript_region:SL2.40ch07:59257198..59261292- functional_description:"Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like "; NbS00045081g0003.1 protein NbS00007511g0004.1 protein NbC24831481g0001.1 protein ; (*GB) gi|224079425|ref|XP_002305860.1| (e_value=1e-111) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FIZ7|OPLA_ARATH (e_value=7e-111) 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1;; (*TAIR) AT5G37830.1 (e_value=5e-112) | Symbols: OXP1 | oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266;; (*ITAG) Solyc09g010560.1.1 (e_value=8e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3920997-3924803 transcript_region:SL2.40ch09:3920997..3924803- go_terms:GO:0017168 functional_description:"5-oxoprolinase (ATP-hydrolyzing) (AHRD V1 **** Q1JWC8_DESAC); contains Interpro domain(s) IPR003692 Hydantoinase B/oxoprolinase "; GO:0017168 NbS00033329g0002.1 protein NbS00006876g0001.1 protein ; (*GB) gi|75164750|sp|Q948X8.1|MTNA_TOBAC (e_value=1e-63) RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein;; (*SWP) sp|Q948X8|MTNA_TOBAC (e_value=4e-65) Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1;; (*TAIR) AT2G05830.3 (e_value=1e-50) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr2:2230057-2231839 FORWARD LENGTH=326;; (*ITAG) Solyc08g022210.2.1 (e_value=1e-61) genomic_reference:SL2.40ch08 gene_region:14105526-14113435 transcript_region:SL2.40ch08:14105526..14113435- go_terms:GO:0003743 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- B6TZD1_MAIZE); contains Interpro domain(s) IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase "; GO:0003743 NbS00037660g0102.1 protein NbS00031562g0001.1 protein ; (*ITAG) Solyc03g097710.2.1 (e_value=1e-38) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00013484g0002.1 protein NbS00026073g0001.1 protein ; (*GB) gi|297744752|emb|CBI38014.3| (e_value=2e-53) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G39050.1 (e_value=5e-51) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc11g044880.1.1 (e_value=1e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36299654-36312937 transcript_region:SL2.40ch11:36299654..36312937+ go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00056244g0001.1 protein ; (*GB) gi|225447502|ref|XP_002265275.1| (e_value=1e-54) PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Vitis vinifera];; (*SWP) sp|P49572|TRPC_ARATH (e_value=5e-45) Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2;; (*TAIR) AT5G48220.1 (e_value=1e-50) | Symbols: | Aldolase-type TIM barrel family protein | chr5:19549930-19552046 FORWARD LENGTH=379;; (*ITAG) Solyc03g111850.2.1 (e_value=4e-66) genomic_reference:SL2.40ch03 gene_region:56510892-56516492 transcript_region:SL2.40ch03:56510892..56516492- go_terms:GO:0004425,GO:0004635 functional_description:"Indole-3-glycerol phosphate synthase-like (AHRD V1 **** C8TFG9_ORYSI); contains Interpro domain(s) IPR013798 Indole-3-glycerol phosphate synthase "; GO:0004425,GO:0004635 NbS00024711g0004.1 protein NbS00004287g0001.1 protein NbS00013387g0004.1 protein NbS00012079g0001.1 protein NbS00056356g0001.1 protein ; (*GB) gi|359806178|ref|NP_001241456.1| (e_value=4e-16) uncharacterized protein LOC100786397 [Glycine max];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-14) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G13640.2 (e_value=3e-16) | Symbols: UNE16 | Homeodomain-like superfamily protein | chr4:7936864-7938497 REVERSE LENGTH=295;; (*ITAG) Solyc09g091880.2.1 (e_value=4e-16) genomic_reference:SL2.40ch09 gene_region:66442582-66446588 transcript_region:SL2.40ch09:66442582..66446588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbC26054509g0001.1 protein NbS00011400g0002.1 protein ; (*GB) gi|269784592|dbj|BAI49722.1| (e_value=3e-20) small R3-type MYB transcription factor [Diospyros kaki];; (*ITAG) Solyc07g052490.2.1 (e_value=2e-20) genomic_reference:SL2.40ch07 gene_region:58326654-58327734 transcript_region:SL2.40ch07:58326654..58327734- go_terms:GO:0005515,GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** D7M4Z5_ARALY); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0005515,GO:0003700 NbC25301342g0001.1 protein NbS00014136g0002.1 protein ; (*GB) gi|356568360|ref|XP_003552379.1| (e_value=1e-100) PREDICTED: K(+) efflux antiporter 2, chloroplastic-like [Glycine max];; (*SWP) sp|O65272|KEA2_ARATH (e_value=1e-89) K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana GN=KEA2 PE=1 SV=2;; (*TAIR) AT4G00630.1 (e_value=8e-91) | Symbols: KEA2, ATKEA2 | K+ efflux antiporter 2 | chr4:261655-267789 REVERSE LENGTH=1174;; (*ITAG) Solyc01g094290.2.1 (e_value=2e-94) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00023502g0002.1 protein NbS00023502g0003.1 protein NbS00048389g0001.1 protein ; (*ITAG) Solyc10g037900.1.1 (e_value=2e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:17841063-17843943 transcript_region:SL2.40ch10:17841063..17843943- functional_description:"Unknown Protein (AHRD V1)"; NbS00017622g0001.1 protein NbC25332466g0001.1 protein ; (*GB) gi|297740371|emb|CBI30553.3| (e_value=1e-91) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=1e-67) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=3e-126) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbC24155925g0001.1 protein ; (*GB) gi|255582182|ref|XP_002531885.1| (e_value=2e-39) protein translocase, putative [Ricinus communis];; (*SWP) sp|O81283|TC159_ARATH (e_value=1e-37) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=8e-39) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc09g074940.1.1 (e_value=7e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62229782-62233993 transcript_region:SL2.40ch09:62229782..62233993- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *-*- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00011726g0002.1 protein NbS00048410g0001.1 protein NbS00045440g0003.1 protein NbS00049244g0003.1 protein NbS00049244g0004.1 protein ; (*GB) gi|225457229|ref|XP_002284129.1| (e_value=0.0) PREDICTED: activating signal cointegrator 1 complex subunit 3 [Vitis vinifera];; (*SWP) sp|Q8N3C0|ASCC3_HUMAN (e_value=6e-87) Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3;; (*TAIR) AT5G61140.1 (e_value=0.0) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2146;; (*ITAG) Solyc06g069480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39617598-39646906 transcript_region:SL2.40ch06:39617598..39646906+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00012774g0001.1 protein NbS00005764g0001.1 protein NbS00005764g0101.1 protein NbS00021130g0002.1 protein NbS00021130g0004.1 protein ; (*ITAG) Solyc08g016280.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7052445-7056982 transcript_region:SL2.40ch08:7052445..7056982+ go_terms:GO:0006508 functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC25456805g0001.1 protein ; (*GB) gi|255539380|ref|XP_002510755.1| (e_value=9e-64) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*TAIR) AT1G76630.2 (e_value=2e-46) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1168;; (*ITAG) Solyc04g082980.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbC24100028g0001.1 protein ; (*GB) gi|116786888|gb|ABK24283.1| (e_value=1e-47) unknown [Picea sitchensis];; (*SWP) sp|P15705|STI1_YEAST (e_value=3e-28) Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STI1 PE=1 SV=1;; (*TAIR) AT1G12270.1 (e_value=2e-45) | Symbols: Hop1 | stress-inducible protein, putative | chr1:4172105-4174575 FORWARD LENGTH=572;; (*ITAG) Solyc08g079170.2.1 (e_value=5e-64) genomic_reference:SL2.40ch08 gene_region:59970339-59976456 transcript_region:SL2.40ch08:59970339..59976456+ go_terms:GO:0004860 functional_description:"Stress-induced protein sti1-like protein (AHRD V1 **-- Q9STH1_ARATH); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0004860 NbC25499389g0001.1 protein NbS00015625g0001.1 protein NbS00001735g0001.1 protein NbS00030829g0002.1 protein NbS00025272g0001.1 protein NbS00010563g0001.1 protein NbS00016836g0002.1 protein NbS00013320g0003.1 protein NbS00037465g0001.1 protein ; (*GB) gi|255565087|ref|XP_002523536.1| (e_value=1e-119) lipid binding protein, putative [Ricinus communis];; (*TAIR) AT5G35180.3 (e_value=4e-118) | Symbols: | Protein of unknown function (DUF1336) | chr5:13424538-13430831 FORWARD LENGTH=593;; (*ITAG) Solyc07g005000.2.1 (e_value=2e-156) genomic_reference:SL2.40ch07 gene_region:16771-35135 transcript_region:SL2.40ch07:16771..35135+ go_terms:GO:0035091 functional_description:"Os10g0479800 protein (Fragment) (AHRD V1 *--- Q0IWY0_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; GO:0035091 NbS00016021g0001.1 protein NbC25757468g0001.1 protein NbS00001404g0007.1 protein NbS00001404g0010.1 protein ; (*GB) gi|357445411|ref|XP_003592983.1| (e_value=2e-107) Thiamine-phosphate pyrophosphorylase [Medicago truncatula];; (*SWP) sp|Q97LQ9|THIE_CLOAB (e_value=5e-51) Thiamine-phosphate synthase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=thiE PE=3 SV=1;; (*TAIR) AT1G22940.1 (e_value=8e-104) | Symbols: TH1, TH-1, THIE | thiamin biosynthesis protein, putative | chr1:8122384-8124908 FORWARD LENGTH=522;; (*ITAG) Solyc01g103950.2.1 (e_value=3e-136) genomic_reference:SL2.40ch01 gene_region:84184010-84191008 transcript_region:SL2.40ch01:84184010..84191008- go_terms:GO:0008152,GO:0009228 functional_description:"Thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase (AHRD V1 **-- A9NB66_COXBR); contains Interpro domain(s) IPR004399 Phosphomethylpyrimidine kinase type-2 "; GO:0008152,GO:0009228 NbS00003133g0004.1 protein NbS00003133g0007.1 protein NbS00046480g0002.1 protein ; (*ITAG) Solyc07g041360.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49857890-49858318 transcript_region:SL2.40ch07:49857890..49858318- functional_description:"Unknown Protein (AHRD V1)"; NbS00007478g0001.1 protein NbS00013452g0004.1 protein NbS00002900g0001.1 protein NbS00028511g0004.1 protein ; (*GB) gi|302399067|gb|ADL36828.1| (e_value=5e-137) TCP domain class transcription factor [Malus x domestica];; (*SWP) sp|Q76NU3|TCPZ_DICDI (e_value=7e-87) T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1;; (*TAIR) AT3G02530.1 (e_value=6e-132) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=6e-145) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00010729g0003.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=1e-25) hypothetical protein VITISV_038665 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-16) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc02g062480.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28737836-28740370 transcript_region:SL2.40ch02:28737836..28740370- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-A Gag-Pol polyprotein (AHRD V1 *-*- YA11B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbC25811939g0001.1 protein NbS00016449g0001.1 protein NbS00016088g0002.1 protein NbS00043935g0001.1 protein NbS00055529g0001.1 protein ; (*ITAG) Solyc11g013530.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6608300-6627616 transcript_region:SL2.40ch11:6608300..6627616+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7KUM9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00002979g0001.1 protein NbS00057667g0001.1 protein NbS00002792g0002.1 protein NbS00029193g0002.1 protein NbS00006845g0001.1 protein NbC23589579g0001.1 protein ; (*GB) gi|224119532|ref|XP_002331184.1| (e_value=2e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT3G14100.1 (e_value=9e-16) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:4673027-4675950 FORWARD LENGTH=427;; (*ITAG) Solyc03g122180.2.1 (e_value=6e-26) genomic_reference:SL2.40ch03 gene_region:64148757-64153338 transcript_region:SL2.40ch03:64148757..64153338- go_terms:GO:0003730 functional_description:"mRNA 3-UTR binding protein (AHRD V1 **** B6T3L2_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003730 NbS00004933g0004.1 protein NbS00049490g0001.1 protein ; (*GB) gi|359491921|ref|XP_002273353.2| (e_value=3e-61) PREDICTED: uncharacterized protein LOC100258188 [Vitis vinifera];; (*TAIR) AT1G76460.1 (e_value=1e-44) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:28686932-28688506 REVERSE LENGTH=285;; (*ITAG) Solyc04g082770.2.1 (e_value=3e-35) genomic_reference:SL2.40ch04 gene_region:63917694-63921381 transcript_region:SL2.40ch04:63917694..63921381- go_terms:GO:0008266 functional_description:"RNA-binding protein 68390-68829 (AHRD V1 *--* Q9C805_ARATH); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008266 NbS00016452g0001.1 protein NbS00035477g0002.1 protein NbS00003771g0006.1 protein NbS00029792g0002.1 protein ; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=2e-51) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=5e-37) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=4e-38) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=5e-35) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035562g0001.1 protein NbS00034448g0002.1 protein NbS00034448g0003.1 protein NbS00001411g0101.1 protein NbC25226993g0001.1 protein ; (*GB) gi|296088716|emb|CBI38166.3| (e_value=2e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G18610.2 (e_value=1e-13) | Symbols: | Protein kinase superfamily protein | chr5:6192736-6195371 FORWARD LENGTH=513;; (*ITAG) Solyc05g024290.2.1 (e_value=9e-19) genomic_reference:SL2.40ch05 gene_region:31012552-31022465 transcript_region:SL2.40ch05:31012552..31022465- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine-protein kinase (AHRD V1 **** C6ZRV0_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00013155g0005.1 protein NbS00014452g0001.1 protein ; (*GB) gi|255558490|ref|XP_002520270.1| (e_value=1e-32) protein transporter, putative [Ricinus communis];; (*TAIR) AT1G21380.1 (e_value=5e-24) | Symbols: | Target of Myb protein 1 | chr1:7485806-7488032 REVERSE LENGTH=506;; (*ITAG) Solyc04g063280.2.1 (e_value=9e-43) genomic_reference:SL2.40ch04 gene_region:54521549-54535248 transcript_region:SL2.40ch04:54521549..54535248- go_terms:GO:0006886,GO:0005622 functional_description:"Vacuolar protein sorting-associated protein 27 (AHRD V1 *--- B2W9Q9_PYRTR); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886,GO:0005622 NbS00019316g0001.1 protein ; (*ITAG) Solyc07g055700.2.1 (e_value=4e-24) genomic_reference:SL2.40ch07 gene_region:60959511-60969153 transcript_region:SL2.40ch07:60959511..60969153- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (Fragment) (AHRD V1 *--- Q5GMH1_MOUSE); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00001486g0005.1 protein NbS00013405g0001.1 protein NbS00021405g0002.1 protein NbS00004652g0001.1 protein NbS00004652g0002.1 protein NbS00004652g0108.1 protein NbS00004077g0001.1 protein NbS00018169g0001.1 protein NbS00026056g0002.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=3e-30) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00001382g0002.1 protein NbS00021071g0001.1 protein NbS00056005g0002.1 protein ; (*GB) gi|255584969|ref|XP_002533196.1| (e_value=4e-13) two-component sensor histidine kinase bacteria, putative [Ricinus communis];; (*SWP) sp|Q9ZWJ9|ARR2_ARATH (e_value=3e-13) Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1;; (*TAIR) AT4G16110.1 (e_value=2e-14) | Symbols: ARR2, RR2 | response regulator 2 | chr4:9112979-9115785 FORWARD LENGTH=664;; (*ITAG) Solyc10g050420.1.1 (e_value=8e-37) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:45166439-45170183 transcript_region:SL2.40ch10:45166439..45170183- go_terms:GO:0006355,GO:0045449 functional_description:"Response regulator 8 (AHRD V1 *-*- Q9AV93_MAIZE); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0006355,GO:0045449 NbS00004162g0001.1 protein NbS00004162g0002.1 protein ; (*ITAG) Solyc05g005620.2.1 (e_value=7e-20) genomic_reference:SL2.40ch05 gene_region:433869-439585 transcript_region:SL2.40ch05:433869..439585- go_terms:GO:0003676,GO:0000166,GO:0006397 functional_description:"RNA-binding protein 25 (AHRD V1 *--- RBM25_HUMAN); contains Interpro domain(s) IPR002483 Splicing factor PWI "; GO:0003676,GO:0000166,GO:0006397 NbS00001622g0001.1 protein NbS00030081g0001.1 protein NbS00055477g0003.1 protein NbS00029397g0002.1 protein NbS00034525g0001.1 protein NbS00041456g0001.1 protein NbS00018741g0001.1 protein NbS00062185g0001.1 protein NbS00007704g0001.1 protein NbS00007704g0003.1 protein ; (*GB) gi|356495051|ref|XP_003516394.1| (e_value=4e-20) PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine max];; (*SWP) sp|Q10233|RPC2_SCHPO (e_value=8e-15) DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1;; (*TAIR) AT5G45140.1 (e_value=2e-19) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=1e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00053880g0002.1 protein NbS00015523g0001.1 protein NbS00051703g0001.1 protein ; (*GB) gi|359483167|ref|XP_002263272.2| (e_value=3e-20) PREDICTED: uncharacterized protein C1A6.10-like [Vitis vinifera];; (*TAIR) AT5G37530.2 (e_value=2e-14) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:14906505-14909020 FORWARD LENGTH=456;; (*ITAG) Solyc05g051230.2.1 (e_value=1e-22) genomic_reference:SL2.40ch05 gene_region:60637189-60645931 transcript_region:SL2.40ch05:60637189..60645931+ go_terms:GO:0005515 functional_description:"Adenylyltransferase and sulfurtransferase MOCS3 (AHRD V1 *--- MOCS3_DROGR); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB "; GO:0005515 NbS00020731g0002.1 protein ; (*GB) gi|296082081|emb|CBI21086.3| (e_value=5e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42485|ZFP1_ARATH (e_value=5e-33) Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1;; (*TAIR) AT1G80730.1 (e_value=4e-34) | Symbols: ZFP1, ATZFP1 | zinc-finger protein 1 | chr1:30339493-30340179 REVERSE LENGTH=228;; (*ITAG) Solyc03g117070.1.1 (e_value=3e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60387755-60388444 transcript_region:SL2.40ch03:60387755..60388444+ go_terms:GO:0003700 functional_description:"Zinc finger family protein (AHRD V1 ***- D7M3K4_ARALY); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00009246g0001.1 protein ; (*GB) gi|297741829|emb|CBI33142.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g010210.1.1 (e_value=2e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3280166-3281911 transcript_region:SL2.40ch11:3280166..3281911- functional_description:"SKIP interacting protein 3 (Fragment) (AHRD V1 *-*- B8Q889_ORYSI)"; NbS00005567g0001.1 protein NbS00021442g0002.1 protein ; (*GB) gi|356543766|ref|XP_003540331.1| (e_value=7e-23) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max];; (*SWP) sp|O64477|Y2913_ARATH (e_value=5e-15) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=4e-16) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g009440.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4495662-4496498 transcript_region:SL2.40ch07:4495662..4496498- go_terms:GO:0048544,GO:0005529 functional_description:"S-locus glycoprotein (Fragment) (AHRD V1 ***- Q84KU9_BRAOL); contains Interpro domain(s) IPR001480 Curculin-like (mannose-binding) lectin "; GO:0048544,GO:0005529 NbS00003727g0001.1 protein NbS00003902g0002.1 protein ; (*GB) gi|7643796|gb|AAF65513.1| (e_value=8e-68) GTP-binding protein [Capsicum annuum];; (*SWP) sp|A0JPJ7|OLA1_RAT (e_value=4e-47) Obg-like ATPase 1 OS=Rattus norvegicus GN=Ola1 PE=2 SV=1;; (*TAIR) AT1G30580.1 (e_value=9e-64) | Symbols: | GTP binding | chr1:10831953-10835454 REVERSE LENGTH=394;; (*ITAG) Solyc02g023970.2.1 (e_value=8e-70) genomic_reference:SL2.40ch02 gene_region:15314779-15327219 transcript_region:SL2.40ch02:15314779..15327219- go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** Q9M7P3_CAPAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00009262g0003.1 protein NbC23489215g0001.1 protein ; (*GB) gi|170328|gb|AAA34116.1| (e_value=1e-20) ribulose-1,5-bisphosphate carboxylase small subunit, partial [Nicotiana tabacum];; (*SWP) sp|P69249|RBS_TOBAC (e_value=3e-21) Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1;; (*TAIR) AT5G38410.1 (e_value=2e-17) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=9e-21) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00018121g0001.1 protein NbS00009252g0001.1 protein NbS00017931g0001.1 protein ; (*GB) gi|283099385|gb|ADB08056.1| (e_value=4e-173) microtubule-associated protein [Nicotiana benthamiana];; (*SWP) sp|Q80XQ2|TBCD5_MOUSE (e_value=1e-16) TBC1 domain family member 5 OS=Mus musculus GN=Tbc1d5 PE=1 SV=2;; (*TAIR) AT4G29950.2 (e_value=1e-94) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:14658088-14660370 FORWARD LENGTH=703;; (*ITAG) Solyc07g008840.2.1 (e_value=2e-153) genomic_reference:SL2.40ch07 gene_region:3803764-3808890 transcript_region:SL2.40ch07:3803764..3808890- go_terms:GO:0005622 functional_description:"TBC1 domain family member 5 (AHRD V1 *--- B9A6K1_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00026069g0001.1 protein ; (*ITAG) Solyc11g039450.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23726518-23727177 transcript_region:SL2.40ch11:23726518..23727177+ functional_description:"Unknown Protein (AHRD V1)"; NbC25165618g0001.1 protein ; (*GB) gi|225436097|ref|XP_002277822.1| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100261604 isoform 1 [Vitis vinifera];; (*ITAG) Solyc11g071950.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52350625-52356685 transcript_region:SL2.40ch11:52350625..52356685+ functional_description:"Unknown Protein (AHRD V1)"; NbC24572971g0001.1 protein ; (*GB) gi|255570829|ref|XP_002526367.1| (e_value=3e-35) protein with unknown function [Ricinus communis];; (*TAIR) AT1G07970.1 (e_value=1e-33) | Symbols: | CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693;; (*ITAG) Solyc11g069170.1.1 (e_value=7e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50878904-50883953 transcript_region:SL2.40ch11:50878904..50883953- functional_description:"Transmembrane protein 209 (AHRD V1 *-*- TM209_MOUSE); contains Interpro domain(s) IPR019176 Cytochrome B561-related, N-terminal "; NbS00001149g0001.1 protein ; (*GB) gi|224079139|ref|XP_002305764.1| (e_value=8e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT2G34050.1 (e_value=1e-19) | Symbols: | INVOLVED IN: protein complex assembly; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATP11 (InterPro:IPR010591); Has 304 Blast hits to 304 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 112; Plants - 39; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr2:14382843-14384198 REVERSE LENGTH=248;; (*ITAG) Solyc02g031770.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:17618833-17623195 transcript_region:SL2.40ch02:17618833..17623195+ go_terms:GO:0005515 functional_description:"ATP synthase mitochondrial F1 complex assembly factor 1 (AHRD V1 **-- ATPF1_HUMAN); contains Interpro domain(s) IPR010591 ATP11 "; GO:0005515 NbS00012678g0001.1 protein ; (*ITAG) Solyc04g011380.2.1 (e_value=6e-66) genomic_reference:SL2.40ch04 gene_region:3850974-3863049 transcript_region:SL2.40ch04:3850974..3863049- go_terms:GO:0008152 functional_description:"Binding protein (AHRD V1 ***- D7LD65_ARALY); contains Interpro domain(s) IPR019607 Putative zinc-finger domain "; GO:0008152 NbS00019795g0004.1 protein NbS00050359g0001.1 protein NbC23358473g0001.1 protein ; (*GB) gi|225441621|ref|XP_002281952.1| (e_value=8e-12) PREDICTED: uncharacterized protein LOC100267624 [Vitis vinifera];; (*ITAG) Solyc10g080700.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00014481g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=4e-20) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00024124g0001.1 protein NbS00041424g0001.1 protein NbS00044142g0001.1 protein ; (*GB) gi|224102873|ref|XP_002312837.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G44330.1 (e_value=1e-19) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbC23455111g0001.1 protein ; (*GB) gi|302143890|emb|CBI22751.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G52280.1 (e_value=1e-21) | Symbols: | Myosin heavy chain-related protein | chr5:21226959-21230109 FORWARD LENGTH=853;; (*ITAG) Solyc03g025830.2.1 (e_value=1e-34) genomic_reference:SL2.40ch03 gene_region:7602707-7608900 transcript_region:SL2.40ch03:7602707..7608900- functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ)"; NbS00003947g0002.1 protein NbC24409595g0001.1 protein ; (*GB) gi|225452988|ref|XP_002262784.1| (e_value=1e-92) PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera];; (*ITAG) Solyc01g097030.2.1 (e_value=5e-93) genomic_reference:SL2.40ch01 gene_region:79765927-79769298 transcript_region:SL2.40ch01:79765927..79769298- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SR14_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbC24268156g0001.1 protein ; (*GB) gi|255575045|ref|XP_002528428.1| (e_value=1e-36) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q3EBZ2|SKI23_ARATH (e_value=1e-34) F-box protein SKIP23 OS=Arabidopsis thaliana GN=SKIP23 PE=1 SV=1;; (*TAIR) AT2G17030.1 (e_value=9e-36) | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr2:7399108-7400650 FORWARD LENGTH=407;; (*ITAG) Solyc01g111920.2.1 (e_value=9e-78) genomic_reference:SL2.40ch01 gene_region:89844796-89847331 transcript_region:SL2.40ch01:89844796..89847331+ functional_description:"F-box family protein (AHRD V1 ***- B9HR11_POPTR); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00010399g0001.1 protein NbC23536830g0001.1 protein ; (*GB) gi|14594915|emb|CAC43318.1| (e_value=6e-40) putative alpha3 proteasome subunit [Nicotiana tabacum];; (*SWP) sp|O81148|PSA4_ARATH (e_value=3e-39) Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1;; (*TAIR) AT3G22110.1 (e_value=2e-40) | Symbols: PAC1 | 20S proteasome alpha subunit C1 | chr3:7792819-7793571 REVERSE LENGTH=250;; (*ITAG) Solyc02g081700.1.1 (e_value=4e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40134968-40135714 transcript_region:SL2.40ch02:40134968..40135714+ go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- Q38HT0_SOLTU); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00052673g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-22) RNase H family protein [Solanum demissum]; NbS00010837g0002.1 protein NbS00010837g0004.1 protein NbS00013946g0001.1 protein ; (*GB) gi|255586237|ref|XP_002533773.1| (e_value=7e-41) DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SA82|BH052_ARATH (e_value=4e-25) Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1;; (*TAIR) AT1G30670.1 (e_value=3e-26) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:10879311-10880188 REVERSE LENGTH=264;; (*ITAG) Solyc08g075110.1.1 (e_value=4e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:56431587-56432571 transcript_region:SL2.40ch08:56431587..56432571- go_terms:GO:0003700 functional_description:"Transcription factor LAX PANICLE (AHRD V1 *--* LAX_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00021629g0002.1 protein NbS00016443g0005.1 protein NbS00010191g0001.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=3e-16) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=3e-13) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00042233g0001.1 protein NbC23972445g0001.1 protein ; (*GB) gi|359491311|ref|XP_002281720.2| (e_value=4e-22) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*SWP) sp|Q9FLQ7|FH20_ARATH (e_value=3e-22) Formin-like protein 20 OS=Arabidopsis thaliana GN=FH20 PE=2 SV=3;; (*TAIR) AT5G07740.1 (e_value=2e-23) | Symbols: | actin binding | chr5:2459076-2466580 REVERSE LENGTH=1649;; (*ITAG) Solyc03g115670.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59365407-59367477 transcript_region:SL2.40ch03:59365407..59367477+ functional_description:"Formin 2B (AHRD V1 ***- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00011998g0001.1 protein NbS00007740g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-24) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbC23328417g0001.1 protein ; (*GB) gi|297832492|ref|XP_002884128.1| (e_value=1e-23) AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q3KRE0|ATAD3_RAT (e_value=3e-16) ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus GN=Atad3 PE=2 SV=1;; (*TAIR) AT2G18330.1 (e_value=3e-26) | Symbols: | AAA-type ATPase family protein | chr2:7965829-7968915 FORWARD LENGTH=636;; (*ITAG) Solyc02g062700.2.1 (e_value=2e-25) genomic_reference:SL2.40ch02 gene_region:29006768-29014242 transcript_region:SL2.40ch02:29006768..29014242+ go_terms:GO:0005515 functional_description:"26S protease regulatory subunit 6A (AHRD V1 *--- PRS6A_YEAST); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005515 NbS00049606g0001.1 protein NbS00021459g0001.1 protein NbS00015752g0001.1 protein NbC24310440g0001.1 protein ; (*GB) gi|194719815|emb|CAR47810.1| (e_value=1e-64) RNA-dependent RNA polymerase 6 [Nicotiana tabacum];; (*SWP) sp|Q9SG02|RDR6_ARATH (e_value=2e-43) RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana GN=RDR6 PE=1 SV=1;; (*TAIR) AT3G49500.1 (e_value=2e-44) | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196;; (*ITAG) Solyc04g014870.2.1 (e_value=6e-59) genomic_reference:SL2.40ch04 gene_region:5125889-5130330 transcript_region:SL2.40ch04:5125889..5130330+ go_terms:GO:0003676 functional_description:"RNA-dependent RNA polymerase (AHRD V1 ***- B3TNC1_9SOLA); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; GO:0003676 NbC23433001g0001.1 protein ; (*GB) gi|147866421|emb|CAN81976.1| (e_value=1e-19) hypothetical protein VITISV_039521 [Vitis vinifera];; (*TAIR) AT5G04460.2 (e_value=2e-19) | Symbols: | RING/U-box superfamily protein | chr5:1260009-1263502 FORWARD LENGTH=825;; (*ITAG) Solyc11g007910.1.1 (e_value=7e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2134146-2140883 transcript_region:SL2.40ch11:2134146..2140883- go_terms:GO:0008270 functional_description:"Neuralized (Fragment) (AHRD V1 *--- Q177Q7_AEDAE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00003924g0001.1 protein ; (*GB) gi|255548864|ref|XP_002515488.1| (e_value=1e-39) catalytic, putative [Ricinus communis];; (*SWP) sp|Q3E9A4|GLYT5_ARATH (e_value=9e-37) Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3;; (*TAIR) AT5G20260.1 (e_value=6e-38) | Symbols: | Exostosin family protein | chr5:6836806-6839532 REVERSE LENGTH=458;; (*ITAG) Solyc12g019050.1.1 (e_value=5e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9004310-9005978 transcript_region:SL2.40ch12:9004310..9005978+ go_terms:GO:0016020 functional_description:"Exostosin-like (AHRD V1 ***- A4Q7M8_MEDTR); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0016020 NbS00009968g0001.1 protein NbS00007240g0001.1 protein ; (*GB) gi|147772469|emb|CAN65103.1| (e_value=1e-79) hypothetical protein VITISV_021044 [Vitis vinifera];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=3e-25) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=2e-26) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc03g110950.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55727909-55729501 transcript_region:SL2.40ch03:55727909..55729501+ go_terms:GO:0005515,GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IF61_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbS00007240g0002.1 protein ; (*GB) gi|255544600|ref|XP_002513361.1| (e_value=1e-37) DELLA protein GAI1, putative [Ricinus communis];; (*SWP) sp|Q9C8Y3|RGL1_ARATH (e_value=2e-14) DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1;; (*TAIR) AT1G66350.1 (e_value=2e-15) | Symbols: RGL1, RGL | RGA-like 1 | chr1:24748327-24749862 FORWARD LENGTH=511;; (*ITAG) Solyc03g110950.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55727909-55729501 transcript_region:SL2.40ch03:55727909..55729501+ go_terms:GO:0005515,GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9IF61_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0003700 NbC24242643g0001.1 protein ; (*GB) gi|6716760|gb|AAF26735.1| (e_value=6e-37) methionine synthase [Coffea arabica];; (*SWP) sp|P93263|METE_MESCR (e_value=1e-36) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1;; (*TAIR) AT3G03780.3 (e_value=1e-37) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc10g081510.1.1 (e_value=7e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61890862-61894137 transcript_region:SL2.40ch10:61890862..61894137+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00037878g0001.1 protein NbC25169022g0001.1 protein ; (*GB) gi|255547740|ref|XP_002514927.1| (e_value=5e-30) protein with unknown function [Ricinus communis];; (*TAIR) AT1G67420.2 (e_value=7e-25) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr1:25255264-25260358 FORWARD LENGTH=922;; (*ITAG) Solyc12g035500.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:25714177-25741519 transcript_region:SL2.40ch12:25714177..25741519+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_XENLA); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00021922g0002.1 protein ; (*GB) gi|357485679|ref|XP_003613127.1| (e_value=2e-20) 60S ribosomal protein L27a-3 [Medicago truncatula];; (*SWP) sp|P49637|R27A3_ARATH (e_value=1e-19) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=9e-21) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc06g071720.1.1 (e_value=4e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:40574165-40574611 transcript_region:SL2.40ch06:40574165..40574611- go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00021922g0003.1 protein NbS00021922g0004.1 protein ; (*GB) gi|293331403|ref|NP_001169536.1| (e_value=5e-31) uncharacterized protein LOC100383412 [Zea mays];; (*SWP) sp|Q5R9L8|OGDHL_PONAB (e_value=2e-26) 2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii GN=OGDHL PE=2 SV=2;; (*TAIR) AT3G55410.1 (e_value=3e-32) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=2e-32) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00022270g0001.1 protein NbC25380931g0001.1 protein ; (*GB) gi|297733904|emb|CBI15151.3| (e_value=1e-107) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q7YR39|DHX16_PANTR (e_value=9e-26) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1;; (*TAIR) AT2G35340.1 (e_value=1e-93) | Symbols: MEE29 | helicase domain-containing protein | chr2:14872728-14879615 FORWARD LENGTH=1044;; (*ITAG) Solyc03g115390.2.1 (e_value=1e-127) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00048697g0002.1 protein NbS00034611g0002.1 protein NbS00012591g0001.1 protein NbS00001479g0002.1 protein NbS00010113g0003.1 protein ; (*GB) gi|225424928|ref|XP_002270695.1| (e_value=1e-158) PREDICTED: pentatricopeptide repeat-containing protein At2g02750 [Vitis vinifera];; (*SWP) sp|Q1PFA6|PP144_ARATH (e_value=4e-134) Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2;; (*TAIR) AT2G02750.1 (e_value=3e-135) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:771641-773482 REVERSE LENGTH=613;; (*ITAG) Solyc04g005770.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:492124-493971 transcript_region:SL2.40ch04:492124..493971+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQ58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010113g0004.1 protein ; (*GB) gi|225424928|ref|XP_002270695.1| (e_value=2e-73) PREDICTED: pentatricopeptide repeat-containing protein At2g02750 [Vitis vinifera];; (*SWP) sp|Q1PFA6|PP144_ARATH (e_value=5e-55) Pentatricopeptide repeat-containing protein At2g02750 OS=Arabidopsis thaliana GN=PCMP-E22 PE=2 SV=2;; (*TAIR) AT2G02750.1 (e_value=4e-56) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:771641-773482 REVERSE LENGTH=613;; (*ITAG) Solyc04g005770.1.1 (e_value=3e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:492124-493971 transcript_region:SL2.40ch04:492124..493971+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQ58_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00035778g0001.1 protein NbC23202838g0001.1 protein ; (*GB) gi|224101949|ref|XP_002312486.1| (e_value=1e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LDE2|BPC2_ARATH (e_value=1e-28) Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1;; (*TAIR) AT1G14685.1 (e_value=9e-30) | Symbols: BPC2, BBR/BPC2, ATBPC2 | basic pentacysteine 2 | chr1:5043086-5043925 FORWARD LENGTH=279;; (*ITAG) Solyc04g008380.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:2015697-2018738 transcript_region:SL2.40ch04:2015697..2018738- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- D7KCI3_ARALY); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00003250g0001.1 protein NbS00059896g0001.1 protein ; (*GB) gi|357528936|gb|AET80688.1| (e_value=4e-71) putrescine hydroxycinnamoyl transferase [Nicotiana attenuata];; (*SWP) sp|A9ZPJ7|AGCT2_HORVU (e_value=2e-27) Agmatine coumaroyltransferase-2 OS=Hordeum vulgare GN=ACT-2 PE=1 SV=1;; (*ITAG) Solyc11g071480.1.1 (e_value=2e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52016366-52017697 transcript_region:SL2.40ch11:52016366..52017697- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (Fragment) (AHRD V1 **-- B9GF60_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00002772g0006.1 protein ; (*GB) gi|58826317|gb|AAW82883.1| (e_value=7e-48) phytoalexin-deficient 4-1 protein [Solanum tuberosum];; (*ITAG) Solyc02g032850.2.1 (e_value=4e-48) genomic_reference:SL2.40ch02 gene_region:20127981-20138156 transcript_region:SL2.40ch02:20127981..20138156+ go_terms:GO:0005515,GO:0016298 functional_description:"Phytoalexin deficient 4 (Fragment) (AHRD V1 ***- B2BDV5_ARALY); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0005515,GO:0016298 NbS00005886g0001.1 protein NbS00005886g0002.1 protein NbS00005886g0006.1 protein NbS00005886g0007.1 protein NbS00005886g0109.1 protein NbS00037355g0001.1 protein NbS00054385g0001.1 protein NbS00006047g0001.1 protein ; (*ITAG) Solyc01g056950.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00001372g0001.1 protein NbS00010849g0002.1 protein NbS00003664g0001.1 protein ; (*GB) gi|357514285|ref|XP_003627431.1| (e_value=2e-21) hypothetical protein MTR_8g022950 [Medicago truncatula];; (*TAIR) AT1G53903.1 (e_value=9e-19) | Symbols: | Protein of unknown function (DUF581) | chr1:20132363-20132842 FORWARD LENGTH=126;; (*ITAG) Solyc03g123460.2.1 (e_value=2e-26) genomic_reference:SL2.40ch03 gene_region:64358120-64359366 transcript_region:SL2.40ch03:64358120..64359366+ functional_description:"Os10g0422600 protein (Fragment) (AHRD V1 *--- Q0IXM0_ORYSJ); contains Interpro domain(s) IPR007650 Protein of unknown function DUF581 "; NbS00011219g0002.1 protein NbS00051916g0001.1 protein NbS00051916g0002.1 protein NbS00031037g0001.1 protein NbS00028705g0001.1 protein ; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=6e-49) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*SWP) sp|F4I096|MED13_ARATH (e_value=2e-24) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.1 (e_value=2e-25) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20646875 FORWARD LENGTH=1921;; (*ITAG) Solyc04g039950.2.1 (e_value=5e-94) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00006164g0201.1 protein NbS00027506g0002.1 protein NbS00049906g0001.1 protein NbS00004856g0001.1 protein NbC23393096g0001.1 protein ; (*GB) gi|53749469|gb|AAU90323.1| (e_value=8e-40) KH domain containing protein [Solanum demissum];; (*TAIR) AT5G15270.1 (e_value=6e-31) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc05g007810.2.1 (e_value=1e-39) genomic_reference:SL2.40ch05 gene_region:2247886-2252833 transcript_region:SL2.40ch05:2247886..2252833- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00029253g0101.1 protein NbS00003148g0001.1 protein NbS00008037g0003.1 protein NbS00012628g0002.1 protein ; (*GB) gi|302143856|emb|CBI22717.3| (e_value=7e-51) unnamed protein product [Vitis vinifera];; (*SWP) sp|A5PK39|TPP2_BOVIN (e_value=4e-24) Tripeptidyl-peptidase 2 OS=Bos taurus GN=TPP2 PE=2 SV=1;; (*TAIR) AT4G20850.1 (e_value=7e-47) | Symbols: TPP2 | tripeptidyl peptidase ii | chr4:11160935-11169889 REVERSE LENGTH=1380;; (*ITAG) Solyc00g140060.2.1 (e_value=8e-70) genomic_reference:SL2.40ch00 gene_region:17088792-17091441 transcript_region:SL2.40ch00:17088792..17091441- go_terms:GO:0006508 functional_description:"Tripeptidyl peptidase II (AHRD V1 ***- Q5VZU9_HUMAN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508 NbS00045308g0001.1 protein ; (*ITAG) Solyc09g020160.1.1 (e_value=9e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:18827013-18830900 transcript_region:SL2.40ch09:18827013..18830900+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00025249g0001.1 protein NbS00031137g0001.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00003168g0001.1 protein NbS00013195g0001.1 protein ; (*GB) gi|147771552|emb|CAN71553.1| (e_value=2e-15) hypothetical protein VITISV_034738 [Vitis vinifera];; (*TAIR) AT5G48050.1 (e_value=2e-13) | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19472661-19473770 REVERSE LENGTH=369;; (*ITAG) Solyc01g010200.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:4988434-4989476 transcript_region:SL2.40ch01:4988434..4989476+ functional_description:"LTRGag-pol-polymerase 3 (AHRD V1 ***- B2BXJ4_ARALY)"; NbS00003389g0002.1 protein NbS00040609g0002.1 protein ; (*GB) gi|255544710|ref|XP_002513416.1| (e_value=5e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G12955.1 (e_value=4e-20) | Symbols: | SAUR-like auxin-responsive protein family | chr3:4135659-4136078 REVERSE LENGTH=139;; (*ITAG) Solyc07g042490.1.1 (e_value=5e-19) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:53019216-53019608 transcript_region:SL2.40ch07:53019216..53019608- functional_description:"SAUR33-auxin-responsive SAUR family member (AHRD V1 ***- B6T035_MAIZE); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00003766g0002.1 protein NbS00026046g0002.1 protein ; (*GB) gi|359489517|ref|XP_003633932.1| (e_value=4e-52) PREDICTED: glyoxylate reductase-like [Vitis vinifera];; (*TAIR) AT2G45630.1 (e_value=3e-36) | Symbols: | D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18796560 FORWARD LENGTH=186;; (*ITAG) Solyc01g093990.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:77328742-77330509 transcript_region:SL2.40ch01:77328742..77330509- go_terms:GO:0008152,GO:0048037 functional_description:"Glyoxylate reductase/hydroxypyruvate reductase (AHRD V1 ***- GRHPR_HUMAN); contains Interpro domain(s) IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "; GO:0008152,GO:0048037 NbC25033439g0001.1 protein ; (*GB) gi|107953708|gb|ABF85694.1| (e_value=4e-88) inorganic pyrophosphatase [Nicotiana rustica];; (*SWP) sp|P31414|AVP1_ARATH (e_value=3e-81) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.2 (e_value=2e-83) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=642;; (*ITAG) Solyc06g068240.2.1 (e_value=8e-88) genomic_reference:SL2.40ch06 gene_region:38687848-38692383 transcript_region:SL2.40ch06:38687848..38692383+ go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00035227g0002.1 protein ; (*GB) gi|224071890|ref|XP_002303589.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT4G11560.1 (e_value=3e-25) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587;; (*ITAG) Solyc08g081050.2.1 (e_value=3e-52) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00004798g0001.1 protein NbS00004798g0002.1 protein NbS00022240g0004.1 protein ; (*GB) gi|255552341|ref|XP_002517215.1| (e_value=2e-43) Mavicyanin, putative [Ricinus communis];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=1e-32) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=9e-42) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065260.1.1 (e_value=6e-56) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58916089-58917302 transcript_region:SL2.40ch09:58916089..58917302- go_terms:GO:0005515 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00005289g0002.1 protein NbS00056034g0001.1 protein NbS00024873g0001.1 protein ; (*GB) gi|357626608|gb|EHJ76642.1| (e_value=2e-14) hypothetical protein KGM_07544 [Danaus plexippus]; NbS00035652g0002.1 protein NbS00048832g0001.1 protein NbS00013247g0002.1 protein NbC23524041g0001.1 protein ; (*GB) gi|225460143|ref|XP_002275945.1| (e_value=3e-30) PREDICTED: pentatricopeptide repeat-containing protein At1g71490-like [Vitis vinifera];; (*SWP) sp|Q9C9I6|PP116_ARATH (e_value=3e-25) Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1;; (*TAIR) AT1G71490.1 (e_value=2e-26) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26933326-26935371 REVERSE LENGTH=681;; (*ITAG) Solyc09g082400.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63553197-63555416 transcript_region:SL2.40ch09:63553197..63555416- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYW1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00024719g0001.1 protein NbS00007952g0003.1 protein NbS00061929g0001.1 protein ; (*GB) gi|147799024|emb|CAN72567.1| (e_value=5e-22) hypothetical protein VITISV_044177 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=9e-13) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc02g062480.1.1 (e_value=9e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28737836-28740370 transcript_region:SL2.40ch02:28737836..28740370- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-A Gag-Pol polyprotein (AHRD V1 *-*- YA11B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00003031g0001.1 protein NbS00047587g0003.1 protein ; (*GB) gi|255560984|ref|XP_002521504.1| (e_value=3e-33) cytochrome P450, putative [Ricinus communis];; (*SWP) sp|Q9M066|C90C1_ARATH (e_value=2e-28) 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3;; (*TAIR) AT4G36380.1 (e_value=1e-29) | Symbols: ROT3 | Cytochrome P450 superfamily protein | chr4:17187973-17192202 REVERSE LENGTH=524;; (*ITAG) Solyc02g084740.2.1 (e_value=2e-46) genomic_reference:SL2.40ch02 gene_region:42420436-42426374 transcript_region:SL2.40ch02:42420436..42426374- go_terms:GO:0016709 functional_description:"Cytochrome P450"; GO:0016709 NbS00027667g0001.1 protein NbS00027667g0003.1 protein ; (*ITAG) Solyc06g061200.1.1 (e_value=2e-12) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:35593437-35594348 transcript_region:SL2.40ch06:35593437..35594348- functional_description:"Glycine-rich protein TomR2 (AHRD V1 *-*- Q7XJI7_SOLLC)"; NbS00027667g0004.1 protein NbS00008167g0001.1 protein NbS00044207g0003.1 protein ; (*GB) gi|113205345|gb|AAT38783.2| (e_value=2e-16) hypothetical protein SDM1_46t00006 [Solanum demissum];; (*ITAG) Solyc03g062840.1.1 (e_value=6e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:29735225-29736893 transcript_region:SL2.40ch03:29735225..29736893- functional_description:"Unknown Protein (AHRD V1)"; NbS00036003g0003.1 protein ; (*GB) gi|357463087|ref|XP_003601825.1| (e_value=1e-18) Lysine/histidine transporter [Medicago truncatula];; (*SWP) sp|Q9FKS8|LHT1_ARATH (e_value=2e-18) Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1;; (*TAIR) AT5G40780.1 (e_value=1e-19) | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446;; (*ITAG) Solyc12g027890.1.1 (e_value=3e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:21457850-21458569 transcript_region:SL2.40ch12:21457850..21458569- functional_description:"Lysine/histidine transporter (AHRD V1 ***- B9HTB5_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00020944g0005.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=6e-18) predicted protein [Populus trichocarpa]; NbS00002912g0001.1 protein NbS00002912g0002.1 protein NbS00056193g0001.1 protein NbS00025009g0001.1 protein ; (*ITAG) Solyc04g016370.2.1 (e_value=2e-21) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00026272g0001.1 protein NbS00006083g0001.1 protein NbS00027044g0005.1 protein NbS00003319g0001.1 protein NbS00010108g0002.1 protein NbS00004681g0001.1 protein ; (*GB) gi|350535735|ref|NP_001234210.1| (e_value=3e-65) calcineurin B-like interacting protein kinase [Solanum lycopersicum];; (*SWP) sp|Q9LDI3|CIPKO_ARATH (e_value=3e-56) CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1;; (*TAIR) AT5G35410.1 (e_value=2e-57) | Symbols: SOS2, SNRK3.11, CIPK24, ATSOS2 | Protein kinase superfamily protein | chr5:13634933-13638062 FORWARD LENGTH=446;; (*ITAG) Solyc12g009570.1.1 (e_value=5e-68) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2827273-2833740 transcript_region:SL2.40ch12:2827273..2833740- go_terms:GO:0006468,GO:0007165 functional_description:"CBL-interacting protein kinase 09 (AHRD V1 ***- A5BZV3_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0007165 NbS00014904g0001.1 protein NbS00044180g0001.1 protein NbS00009507g0001.1 protein NbS00025773g0002.1 protein ; (*GB) gi|225457017|ref|XP_002279079.1| (e_value=6e-62) PREDICTED: pantothenate kinase 2-like [Vitis vinifera];; (*SWP) sp|Q8L5Y9|PANK2_ARATH (e_value=2e-53) Pantothenate kinase 2 OS=Arabidopsis thaliana GN=At4g32180 PE=1 SV=2;; (*TAIR) AT4G32180.3 (e_value=8e-55) | Symbols: ATPANK2, PANK2 | pantothenate kinase 2 | chr4:15538340-15543715 REVERSE LENGTH=783;; (*ITAG) Solyc03g112910.2.1 (e_value=5e-81) genomic_reference:SL2.40ch03 gene_region:57242394-57257123 transcript_region:SL2.40ch03:57242394..57257123+ go_terms:GO:0005515,GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 *-** C1FDA4_9CHLO); contains Interpro domain(s) IPR015844 Pantothenate kinase, acetyl-CoA regulated, two-domain type "; GO:0005515,GO:0004594 NbS00007060g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=7e-11) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00025209g0004.1 protein NbS00018328g0004.1 protein NbS00006125g0001.1 protein NbS00006125g0004.1 protein NbS00013725g0003.1 protein NbS00051222g0002.1 protein NbS00018859g0001.1 protein NbS00002403g0302.1 protein NbS00005969g0103.1 protein NbS00005969g0106.1 protein NbC24806523g0001.1 protein ; (*GB) gi|224123600|ref|XP_002330161.1| (e_value=9e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G05510.2 (e_value=9e-35) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr3:1596133-1598074 FORWARD LENGTH=358;; (*ITAG) Solyc01g099710.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:81633557-81636870 transcript_region:SL2.40ch01:81633557..81636870+ go_terms:GO:0008152 functional_description:"Tafazzin (AHRD V1 *-*- Q6PUS0_DANRE); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0008152 NbS00009922g0001.1 protein NbS00057008g0001.1 protein NbS00057008g0002.1 protein NbC23129049g0001.1 protein ; (*GB) gi|224062371|ref|XP_002300824.1| (e_value=3e-15) homocysteine s-methyltransferase [Populus trichocarpa];; (*SWP) sp|Q9M1W4|HMT2_ARATH (e_value=5e-14) Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1;; (*TAIR) AT3G63250.2 (e_value=4e-15) | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase 2 | chr3:23370575-23371974 REVERSE LENGTH=293;; (*ITAG) Solyc09g065520.2.1 (e_value=7e-21) genomic_reference:SL2.40ch09 gene_region:59228854-59238380 transcript_region:SL2.40ch09:59228854..59238380- go_terms:GO:0008898 functional_description:"Homocysteine s-methyltransferase (AHRD V1 **** B9GSK5_POPTR); contains Interpro domain(s) IPR003726 Homocysteine S-methyltransferase "; GO:0008898 NbS00010546g0001.1 protein ; (*GB) gi|297806013|ref|XP_002870890.1| (e_value=4e-24) ATP binding protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LFG1|Y3359_ARATH (e_value=4e-19) Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At3g53590 OS=Arabidopsis thaliana GN=At3g53590 PE=3 SV=2;; (*TAIR) AT5G01950.1 (e_value=4e-26) | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:365040-369532 REVERSE LENGTH=951;; (*ITAG) Solyc09g055180.2.1 (e_value=2e-30) genomic_reference:SL2.40ch09 gene_region:32511751-32522286 transcript_region:SL2.40ch09:32511751..32522286+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00003246g0001.1 protein NbS00028873g0001.1 protein NbS00058857g0001.1 protein ; (*GB) gi|356502442|ref|XP_003520028.1| (e_value=1e-48) PREDICTED: phosphoserine aminotransferase, chloroplastic-like [Glycine max];; (*SWP) sp|Q96255|SERC_ARATH (e_value=3e-46) Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1;; (*TAIR) AT2G17630.1 (e_value=2e-47) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:7666637-7667905 FORWARD LENGTH=422;; (*ITAG) Solyc02g082830.1.1 (e_value=6e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41056853-41058151 transcript_region:SL2.40ch02:41056853..41058151+ go_terms:GO:0005515,GO:0004648 functional_description:"Phosphoserine aminotransferase (AHRD V1 **** B9H657_POPTR); contains Interpro domain(s) IPR003248 Phosphoserine aminotransferase "; GO:0005515,GO:0004648 NbS00010925g0002.1 protein NbS00003169g0001.1 protein ; (*ITAG) Solyc02g005360.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00004265g0004.1 protein NbS00021254g0001.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=5e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g056380.1.1 (e_value=1e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00036341g0003.1 protein ; (*GB) gi|357510255|ref|XP_003625416.1| (e_value=3e-37) Chemotaxis protein cheY-like protein [Medicago truncatula];; (*SWP) sp|Q9M8Y4|ARR22_ARATH (e_value=7e-28) Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1;; (*TAIR) AT5G26594.1 (e_value=1e-29) | Symbols: ARR24, RR24 | response regulator 24 | chr5:9269282-9270254 FORWARD LENGTH=139;; (*ITAG) Solyc11g071630.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52133392-52134005 transcript_region:SL2.40ch11:52133392..52134005- go_terms:GO:0006355 functional_description:"Sensor histidine kinase LuxQ (AHRD V1 ***- D2YSE6_VIBMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00009730g0001.1 protein ; (*GB) gi|357437077|ref|XP_003588814.1| (e_value=3e-24) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*ITAG) Solyc12g042690.1.1 (e_value=2e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:43475288-43476868 transcript_region:SL2.40ch12:43475288..43476868- functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00010049g0003.1 protein NbC23683697g0001.1 protein ; (*GB) gi|255538844|ref|XP_002510487.1| (e_value=2e-46) lysine-specific histone demethylase, putative [Ricinus communis];; (*TAIR) AT4G16310.1 (e_value=1e-43) | Symbols: LDL3 | LSD1-like 3 | chr4:9218636-9224764 FORWARD LENGTH=1628;; (*ITAG) Solyc04g081100.2.1 (e_value=5e-52) genomic_reference:SL2.40ch04 gene_region:62733558-62743254 transcript_region:SL2.40ch04:62733558..62743254- functional_description:"Amine oxidase (AHRD V1 *-*- A4RUP0_OSTLU); contains Interpro domain(s) IPR002937 Amine oxidase "; NbS00011320g0001.1 protein NbS00021110g0001.1 protein NbS00021110g0002.1 protein NbS00026346g0001.1 protein NbS00024207g0001.1 protein ; (*GB) gi|115446863|ref|NP_001047211.1| (e_value=8e-38) Os02g0575200 [Oryza sativa Japonica Group];; (*SWP) sp|Q9LZM3|PPCS2_ARATH (e_value=1e-36) Phosphopantothenate--cysteine ligase 2 OS=Arabidopsis thaliana GN=PPCS2 PE=2 SV=2;; (*TAIR) AT5G02080.1 (e_value=2e-38) | Symbols: | DNA / pantothenate metabolism flavoprotein | chr5:409811-411557 FORWARD LENGTH=270;; (*ITAG) Solyc12g056840.1.1 (e_value=1e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48269504-48272374 transcript_region:SL2.40ch12:48269504..48272374+ functional_description:"Phosphopantothenate--cysteine ligase (AHRD V1 **-- B6TMK9_MAIZE); contains Interpro domain(s) IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal "; NbS00024207g0002.1 protein ; (*GB) gi|224063167|ref|XP_002301023.1| (e_value=3e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g056840.1.1 (e_value=8e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48269504-48272374 transcript_region:SL2.40ch12:48269504..48272374+ functional_description:"Phosphopantothenate--cysteine ligase (AHRD V1 **-- B6TMK9_MAIZE); contains Interpro domain(s) IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal "; NbS00012505g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-52) hypothetical protein [Nicotiana tabacum];; (*ITAG) Solyc02g077410.2.1 (e_value=1e-15) genomic_reference:SL2.40ch02 gene_region:36930997-36935490 transcript_region:SL2.40ch02:36930997..36935490- functional_description:"heat-and acid-stable phosphoprotein (AHRD V1 *-*- B5X267_SALSA); contains Interpro domain(s) IPR019380 Casein kinase substrate, phosphoprotein PP28 "; NbS00034908g0002.1 protein ; (*GB) gi|6625810|gb|AAF19402.1|AF203480_1 (e_value=1e-76) phosphoenolpyruvate carboxylase kinase, partial [Solanum lycopersicum];; (*SWP) sp|Q93VK0|PPCK2_ARATH (e_value=1e-43) Phosphoenolpyruvate carboxylase kinase 2 OS=Arabidopsis thaliana GN=PPCK2 PE=1 SV=2;; (*TAIR) AT3G04530.1 (e_value=9e-45) | Symbols: PPCK2, PEPCK2, ATPPCK2 | phosphoenolpyruvate carboxylase kinase 2 | chr3:1221546-1222456 FORWARD LENGTH=278;; (*ITAG) Solyc04g009900.2.1 (e_value=5e-79) genomic_reference:SL2.40ch04 gene_region:3214698-3216087 transcript_region:SL2.40ch04:3214698..3216087+ go_terms:GO:0006468 functional_description:"Calcium-dependent protein kinase 2 (AHRD V1 ***- B4FZS4_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC23654049g0001.1 protein ; (*GB) gi|359476532|ref|XP_002268094.2| (e_value=4e-20) PREDICTED: uncharacterized protein LOC100241547 [Vitis vinifera];; (*TAIR) AT3G04260.1 (e_value=2e-22) | Symbols: PTAC3 | plastid transcriptionally active 3 | chr3:1123231-1127515 REVERSE LENGTH=910;; (*ITAG) Solyc04g050540.2.1 (e_value=3e-29) genomic_reference:SL2.40ch04 gene_region:46684389-46704238 transcript_region:SL2.40ch04:46684389..46704238- go_terms:GO:0003677 functional_description:"Pentatricopeptide repeat protein (AHRD V1 *-*- Q1G1I8_MAIZE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003677 NbS00023785g0003.1 protein NbS00011562g0001.1 protein ; (*GB) gi|225431924|ref|XP_002277060.1| (e_value=2e-36) PREDICTED: uncharacterized protein LOC100248159 [Vitis vinifera];; (*TAIR) AT5G49430.1 (e_value=8e-37) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr5:20037338-20045454 REVERSE LENGTH=1677;; (*ITAG) Solyc01g060040.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:62265462-62270575 transcript_region:SL2.40ch01:62265462..62270575- go_terms:GO:0000166 functional_description:"Bromodomain and WD repeat-containing protein 1 (Predicted) (AHRD V1 *-*- B4USY4_OTOGA); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0000166 NbS00005120g0002.1 protein ; (*ITAG) Solyc03g112200.1.1 (e_value=2e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:56739563-56740318 transcript_region:SL2.40ch03:56739563..56740318- functional_description:"Unknown Protein (AHRD V1)"; NbC24261845g0001.1 protein ; (*GB) gi|297825759|ref|XP_002880762.1| (e_value=4e-15) IQ-domain 6 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G26180.1 (e_value=2e-17) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416;; (*ITAG) Solyc08g062940.2.1 (e_value=7e-11) genomic_reference:SL2.40ch08 gene_region:49582645-49584764 transcript_region:SL2.40ch08:49582645..49584764+ go_terms:GO:0005516 functional_description:"Calmodulin binding protein (AHRD V1 **-* B6T951_MAIZE); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region "; GO:0005516 NbS00023970g0001.1 protein NbS00032820g0001.1 protein NbS00001748g0004.1 protein NbS00001748g0006.1 protein NbS00001748g0007.1 protein NbS00020265g0001.1 protein ; (*TAIR) AT5G49400.1 (e_value=1e-11) | Symbols: | zinc knuckle (CCHC-type) family protein | chr5:20031154-20031981 FORWARD LENGTH=275;; (*ITAG) Solyc01g060030.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:62258951-62260745 transcript_region:SL2.40ch01:62258951..62260745+ functional_description:"Zinc finger CCHC domain-containing protein 10 (AHRD V1 *-*- B6TKA1_MAIZE)"; NbS00002237g0002.1 protein NbS00013002g0001.1 protein NbS00013002g0002.1 protein NbC24203037g0001.1 protein ; (*ITAG) Solyc12g036410.1.1 (e_value=9e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:31125740-31133201 transcript_region:SL2.40ch12:31125740..31133201+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- D7DAE6_STAHD); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0005525,GO:0005622 NbC23749343g0001.1 protein ; (*GB) gi|224070955|ref|XP_002303302.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G16290.1 (e_value=4e-36) | Symbols: EMB2083 | AAA-type ATPase family protein | chr3:5521187-5524995 REVERSE LENGTH=876;; (*ITAG) Solyc12g044400.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44759933-44772028 transcript_region:SL2.40ch12:44759933..44772028- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog 4 (AHRD V1 *-*- FTSH4_SYNY3); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbC24347764g0001.1 protein NbS00012694g0002.1 protein NbS00049890g0001.1 protein ; (*GB) gi|359494939|ref|XP_003634876.1| (e_value=4e-39) PREDICTED: exportin-7-like [Vitis vinifera];; (*TAIR) AT5G06120.1 (e_value=4e-33) | Symbols: | ARM repeat superfamily protein | chr5:1844797-1852601 FORWARD LENGTH=1066;; (*ITAG) Solyc01g056520.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00035825g0001.1 protein ; (*GB) gi|359482656|ref|XP_002264851.2| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100248501 [Vitis vinifera];; (*TAIR) AT1G17440.2 (e_value=2e-23) | Symbols: EER4, TAF12B | Transcription initiation factor TFIID subunit A | chr1:5984407-5987663 REVERSE LENGTH=683;; (*ITAG) Solyc06g062900.2.1 (e_value=2e-22) genomic_reference:SL2.40ch06 gene_region:36089085-36092096 transcript_region:SL2.40ch06:36089085..36092096+ go_terms:GO:0003677,GO:0005669 functional_description:"Transcription initiation factor TFIID subunit 12 (AHRD V1 *-*- B6K2I7_SCHJY); contains Interpro domain(s) IPR003228 Transcription initiation factor TFIID "; GO:0003677,GO:0005669 NbS00011482g0002.1 protein ; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=3e-73) importin beta-3, putative [Ricinus communis];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=6e-12) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=8e-68) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-81) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00007940g0001.1 protein ; (*GB) gi|22128589|gb|AAM52340.1| (e_value=2e-53) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q9SXD1|PPR91_ARATH (e_value=8e-24) Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2;; (*TAIR) AT1G62670.1 (e_value=6e-25) | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630;; (*ITAG) Solyc06g007300.1.1 (e_value=2e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00007940g0002.1 protein ; (*GB) gi|22128591|gb|AAM52341.1| (e_value=9e-58) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|P0C7Q7|PPR38_ARATH (e_value=2e-19) Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1;; (*TAIR) AT1G12700.1 (e_value=2e-20) | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735;; (*ITAG) Solyc06g007740.1.1 (e_value=4e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00007940g0004.1 protein ; (*GB) gi|22128589|gb|AAM52340.1| (e_value=3e-47) fertility restorer-like protein [Petunia x hybrida];; (*SWP) sp|Q0WKV3|PPR36_ARATH (e_value=3e-18) Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1;; (*TAIR) AT1G12300.1 (e_value=2e-19) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4184163-4186076 REVERSE LENGTH=637;; (*ITAG) Solyc06g007740.1.1 (e_value=4e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00000596g0001.1 protein ; (*GB) gi|225453494|ref|XP_002275162.1| (e_value=4e-175) PREDICTED: elongation factor G, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FE64|EFGM_ORYSJ (e_value=1e-173) Elongation factor G, mitochondrial OS=Oryza sativa subsp. japonica GN=Os03g0565500 PE=2 SV=2;; (*TAIR) AT1G45332.1 (e_value=3e-170) | Symbols: | Translation elongation factor EFG/EF2 protein | chr1:17172507-17176683 REVERSE LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbS00023993g0002.1 protein ; (*GB) gi|225443049|ref|XP_002269241.1| (e_value=4e-48) PREDICTED: F-box protein At5g07610 [Vitis vinifera];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=2e-36) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=2e-37) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc04g071270.1.1 (e_value=2e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:55799722-55800912 transcript_region:SL2.40ch04:55799722..55800912- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00023854g0003.1 protein NbS00002042g0001.1 protein NbS00023211g0002.1 protein ; (*GB) gi|3790190|emb|CAA74777.1| (e_value=8e-44) NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|O81796|IDH3_ARATH (e_value=5e-21) Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1;; (*TAIR) AT4G35650.1 (e_value=4e-22) | Symbols: IDH-III | isocitrate dehydrogenase III | chr4:16908584-16909973 FORWARD LENGTH=368;; (*ITAG) Solyc02g082860.2.1 (e_value=4e-45) genomic_reference:SL2.40ch02 gene_region:41089620-41095431 transcript_region:SL2.40ch02:41089620..41095431+ go_terms:GO:0004449,GO:0008270 functional_description:"Isocitrate dehydrogenase (AHRD V1 **** A3LYS8_PICST); contains Interpro domain(s) IPR004434 Isocitrate dehydrogenase NAD-dependent, mitochondrial "; GO:0004449,GO:0008270 NbC24594571g0001.1 protein NbS00041800g0003.1 protein NbS00041800g0004.1 protein NbS00014872g0003.1 protein NbS00039541g0001.1 protein NbS00031433g0001.1 protein NbS00005693g0001.1 protein NbS00005693g0103.1 protein NbS00038375g0001.1 protein NbS00031155g0001.1 protein NbS00013651g0001.1 protein ; (*GB) gi|388499866|gb|AFK37999.1| (e_value=5e-27) unknown [Medicago truncatula];; (*TAIR) AT1G74640.1 (e_value=4e-27) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:28032849-28034659 FORWARD LENGTH=370;; (*ITAG) Solyc03g116110.2.1 (e_value=5e-38) genomic_reference:SL2.40ch03 gene_region:59675160-59679638 transcript_region:SL2.40ch03:59675160..59679638- functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 ***- B2J569_NOSP7)"; NbC24046866g0001.1 protein NbS00011233g0001.1 protein ; (*GB) gi|356562050|ref|XP_003549288.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100791212 [Glycine max];; (*TAIR) AT2G01050.1 (e_value=9e-39) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbS00027176g0001.1 protein NbS00013005g0102.1 protein NbS00025676g0002.1 protein NbS00025676g0003.1 protein NbS00008419g0003.1 protein NbC24569821g0001.1 protein ; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=4e-16) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=3e-15) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ go_terms:GO:0006241 functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "; GO:0006241 NbS00040784g0001.1 protein NbS00009041g0003.1 protein NbS00015951g0001.1 protein NbS00034237g0004.1 protein NbS00034347g0002.1 protein NbS00024252g0001.1 protein NbS00024252g0002.1 protein NbS00000580g0101.1 protein NbS00010164g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010164g0008.1 protein ; (*GB) gi|255557973|ref|XP_002520015.1| (e_value=2e-61) guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis];; (*ITAG) Solyc03g096900.2.1 (e_value=2e-89) genomic_reference:SL2.40ch03 gene_region:52711245-52720659 transcript_region:SL2.40ch03:52711245..52720659- go_terms:GO:0015969,GO:0003824 functional_description:"GTP pyrophosphokinase (AHRD V1 *--- A4AJW6_9ACTN); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0015969,GO:0003824 NbS00007573g0001.1 protein ; (*ITAG) Solyc08g074420.2.1 (e_value=6e-20) genomic_reference:SL2.40ch08 gene_region:55706856-55712251 transcript_region:SL2.40ch08:55706856..55712251+ functional_description:"Coiled-coil domain-containing protein 130 (AHRD V1 *--- CC130_BOVIN); contains Interpro domain(s) IPR007590 Protein of unknown function DUF572 "; NbS00010683g0002.1 protein NbS00000697g0001.1 protein NbS00038871g0001.1 protein NbS00007271g0003.1 protein NbS00024855g0001.1 protein NbS00013014g0001.1 protein NbS00037990g0001.1 protein NbS00047198g0001.1 protein NbC23908242g0001.1 protein ; (*GB) gi|374095609|gb|AEY85032.1| (e_value=5e-36) spliceosomal-like protein [Camellia sinensis];; (*SWP) sp|Q1LVE8|SF3B3_DANRE (e_value=6e-29) Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1;; (*TAIR) AT3G55200.1 (e_value=3e-35) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214;; (*ITAG) Solyc04g010260.2.1 (e_value=2e-38) genomic_reference:SL2.40ch04 gene_region:3583577-3588628 transcript_region:SL2.40ch04:3583577..3588628- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor RSE1 (AHRD V1 ***- A8N7S1_COPC7); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515 NbC23793619g0001.1 protein ; (*GB) gi|350535771|ref|NP_001234724.1| (e_value=7e-47) tm-1^GCR26 protein [Solanum lycopersicum];; (*SWP) sp|P55607|Y4OV_RHISN (e_value=4e-24) Uncharacterized protein y4oV OS=Rhizobium sp. (strain NGR234) GN=NGR_a02140 PE=4 SV=1;; (*TAIR) AT5G66420.2 (e_value=1e-31) | Symbols: | LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | chr5:26521893-26524986 REVERSE LENGTH=754;; (*ITAG) Solyc02g062560.2.1 (e_value=1e-49) genomic_reference:SL2.40ch02 gene_region:28856001-28864037 transcript_region:SL2.40ch02:28856001..28864037- go_terms:GO:0005975 functional_description:"TIM-barrel enzyme family protein (AHRD V1 *--- C5JTT1_AJEDS); contains Interpro domain(s) IPR008322 Uncharacterised conserved protein UCP033271 IPR009215 TIM-barrel signal transduction protein, predicted IPR018087 Glycoside hydrolase, family 5, conserved site "; GO:0005975 NbS00024414g0001.1 protein NbS00029201g0001.1 protein ; (*GB) gi|359477536|ref|XP_003631992.1| (e_value=1e-18) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*TAIR) AT2G32030.1 (e_value=4e-16) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc09g082240.2.1 (e_value=1e-30) genomic_reference:SL2.40ch09 gene_region:63446343-63448369 transcript_region:SL2.40ch09:63446343..63448369+ go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 *-** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00058199g0001.1 protein ; (*GB) gi|388522803|gb|AFK49463.1| (e_value=2e-90) unknown [Medicago truncatula];; (*SWP) sp|Q9S713|STT7_ARATH (e_value=5e-88) Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1;; (*TAIR) AT1G68830.1 (e_value=4e-89) | Symbols: STN7 | STT7 homolog STN7 | chr1:25872654-25875473 REVERSE LENGTH=562;; (*ITAG) Solyc12g021280.1.1 (e_value=3e-91) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15120633-15133486 transcript_region:SL2.40ch12:15120633..15133486- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00009123g0001.1 protein NbS00013100g0002.1 protein NbS00032449g0101.1 protein NbS00027354g0003.1 protein NbS00007156g0001.1 protein NbS00057080g0001.1 protein NbS00014987g0101.1 protein NbS00011487g0002.1 protein NbS00011487g0003.1 protein NbC25671164g0001.1 protein ; (*GB) gi|356542899|ref|XP_003539902.1| (e_value=3e-14) PREDICTED: CDKAL1-like protein-like [Glycine max];; (*TAIR) AT1G72090.1 (e_value=4e-16) | Symbols: | Methylthiotransferase | chr1:27123617-27126767 FORWARD LENGTH=601;; (*ITAG) Solyc11g022390.1.1 (e_value=4e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:13722567-13735038 transcript_region:SL2.40ch11:13722567..13735038+ go_terms:GO:0008152,GO:0051536,GO:0009451 functional_description:"(Dimethylallyl)adenosine tRNA methylthiotransferase miaB (AHRD V1 ***- MIAB_SULSY); contains Interpro domain(s) IPR006466 MiaB-like tRNA modifying enzyme, archaeal-type "; GO:0008152,GO:0051536,GO:0009451 NbS00004171g0001.1 protein ; (*GB) gi|298569865|gb|ADI87448.1| (e_value=1e-43) cembratrienol synthase 3 [Nicotiana sylvestris];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=8e-25) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT1G61680.2 (e_value=2e-13) | Symbols: TPS14 | terpene synthase 14 | chr1:22772455-22774687 REVERSE LENGTH=562;; (*ITAG) Solyc06g060180.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34531453-34535121 transcript_region:SL2.40ch06:34531453..34535121+ go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00003282g0002.1 protein NbS00012311g0002.1 protein ; (*GB) gi|225426228|ref|XP_002263774.1| (e_value=2e-14) PREDICTED: glutamine-dependent NAD(+) synthetase [Vitis vinifera];; (*TAIR) AT1G55090.1 (e_value=3e-14) | Symbols: | carbon-nitrogen hydrolase family protein | chr1:20554857-20558188 FORWARD LENGTH=725;; (*ITAG) Solyc08g082830.2.1 (e_value=1e-18) genomic_reference:SL2.40ch08 gene_region:62660064-62668736 transcript_region:SL2.40ch08:62660064..62668736- go_terms:GO:0042802 functional_description:"NH(3)-dependent NAD(+) synthetase (AHRD V1 ***- A1ZGC5_9BACT); contains Interpro domain(s) IPR014445 Glutamine-dependent NAD(+) synthetase, GAT region "; GO:0042802 NbS00028475g0003.1 protein ; (*GB) gi|297799236|ref|XP_002867502.1| (e_value=5e-83) glycosyltransferase family 14 protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G27480.2 (e_value=6e-85) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr4:13736835-13738317 REVERSE LENGTH=421;; (*ITAG) Solyc12g013850.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4639057-4641430 transcript_region:SL2.40ch12:4639057..4641430- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase (AHRD V1 *--* GCNT3_BHV4L); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00015907g0003.1 protein NbC23803083g0001.1 protein ; (*GB) gi|350538191|ref|NP_001234331.1| (e_value=2e-41) JAB [Solanum lycopersicum];; (*SWP) sp|Q9FVU9|CSN5A_ARATH (e_value=7e-39) COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1;; (*TAIR) AT1G71230.1 (e_value=6e-40) | Symbols: CSN5B, CSN5, AJH2 | COP9-signalosome 5B | chr1:26852560-26854255 FORWARD LENGTH=358;; (*ITAG) Solyc06g073150.2.1 (e_value=3e-44) genomic_reference:SL2.40ch06 gene_region:41454567-41459362 transcript_region:SL2.40ch06:41454567..41459362- go_terms:GO:0003713 functional_description:"COP9 signalosome complex subunit 5b (AHRD V1 ***- B4FUK9_MAIZE); contains Interpro domain(s) IPR000555 Mov34/MPN/PAD-1 "; GO:0003713 NbS00002248g0001.1 protein ; (*GB) gi|357459283|ref|XP_003599922.1| (e_value=5e-16) hypothetical protein MTR_3g048980 [Medicago truncatula]; NbS00022598g0002.1 protein NbC23766469g0001.1 protein ; (*GB) gi|297736966|emb|CBI26167.3| (e_value=1e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G06210.1 (e_value=2e-33) | Symbols: | ARM repeat superfamily protein | chr3:1880093-1883317 FORWARD LENGTH=840;; (*ITAG) Solyc01g080260.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:72003994-72006816 transcript_region:SL2.40ch01:72003994..72006816+ go_terms:GO:0005488 functional_description:"At4g14280-like protein (Fragment) (AHRD V1 *-*- C7FD87_ARALP); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00060918g0002.1 protein NbS00007070g0202.1 protein NbS00024229g0003.1 protein ; (*ITAG) Solyc07g023940.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00010971g0001.1 protein ; (*GB) gi|225429169|ref|XP_002271290.1| (e_value=2e-23) PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera];; (*SWP) sp|Q9FKK2|AGL62_ARATH (e_value=8e-18) Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1;; (*TAIR) AT5G60440.1 (e_value=6e-19) | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306329-24307520 FORWARD LENGTH=299;; (*ITAG) Solyc01g106730.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00019932g0001.1 protein NbS00017161g0001.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=8e-19) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00030251g0001.1 protein ; (*GB) gi|147843797|emb|CAN79460.1| (e_value=1e-29) hypothetical protein VITISV_022546 [Vitis vinifera];; (*TAIR) AT1G31940.1 (e_value=2e-28) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:11470293-11471154 REVERSE LENGTH=158;; (*ITAG) Solyc08g076180.2.1 (e_value=5e-40) genomic_reference:SL2.40ch08 gene_region:57367112-57370144 transcript_region:SL2.40ch08:57367112..57370144- functional_description:"At1g31940/F5M6.6 (AHRD V1 ***- Q8VYV3_ARATH)"; NbS00030251g0002.1 protein NbS00030251g0003.1 protein NbS00006180g0002.1 protein NbS00036107g0001.1 protein ; (*GB) gi|113476890|ref|YP_722951.1| (e_value=2e-22) pgk gene product [Trichodesmium erythraeum IMS101];; (*SWP) sp|Q10Z46|PGK_TRIEI (e_value=6e-24) Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1;; (*TAIR) AT1G79550.2 (e_value=4e-22) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=3e-22) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00019459g0001.1 protein NbS00020157g0002.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=2e-33) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|O94709|ODPX_SCHPO (e_value=1e-13) Probable pyruvate dehydrogenase protein X component, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1259.09c PE=2 SV=1;; (*TAIR) AT1G34430.1 (e_value=2e-31) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=4e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbC23842620g0001.1 protein ; (*GB) gi|255556001|ref|XP_002519035.1| (e_value=6e-39) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G04920.1 (e_value=3e-37) | Symbols: SFR6 | sensitive to freezing 6 | chr4:2497931-2504996 FORWARD LENGTH=1278;; (*ITAG) Solyc02g078520.2.1 (e_value=7e-41) genomic_reference:SL2.40ch02 gene_region:37750390-37767841 transcript_region:SL2.40ch02:37750390..37767841- functional_description:"Unknown Protein (AHRD V1)"; NbC25520750g0001.1 protein ; (*GB) gi|359484471|ref|XP_002281345.2| (e_value=7e-51) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=1e-50) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT4G26100.1 (e_value=8e-52) | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227885-13230508 REVERSE LENGTH=450;; (*ITAG) Solyc05g016410.2.1 (e_value=2e-53) genomic_reference:SL2.40ch05 gene_region:16183759-16196457 transcript_region:SL2.40ch05:16183759..16196457+ go_terms:GO:0006468 functional_description:"Casein kinase (AHRD V1 ***- A2I5G0_BETVU); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012910g0001.1 protein ; (*GB) gi|255558952|ref|XP_002520499.1| (e_value=7e-72) d-lactate dehydrogenase, putative [Ricinus communis];; (*TAIR) AT2G46760.1 (e_value=6e-70) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=9e-70) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00010951g0005.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00041483g0001.1 protein NbS00040229g0106.1 protein NbS00032613g0001.1 protein NbS00004818g0001.1 protein NbS00005282g0003.1 protein ; (*GB) gi|68131852|gb|AAY85204.1| (e_value=1e-94) RNA polymerase II second largest subunit [Dillenia suffruticosa];; (*SWP) sp|Q42877|RPB2_SOLLC (e_value=6e-93) DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1;; (*TAIR) AT4G21710.1 (e_value=1e-83) | Symbols: NRPB2, EMB1989, RPB2 | DNA-directed RNA polymerase family protein | chr4:11535684-11542200 REVERSE LENGTH=1188;; (*ITAG) Solyc02g078260.2.1 (e_value=4e-94) genomic_reference:SL2.40ch02 gene_region:37583500-37591044 transcript_region:SL2.40ch02:37583500..37591044+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Y9_PETHY); contains Interpro domain(s) IPR007121 RNA polymerase, beta subunit, conserved site IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00005282g0004.1 protein NbS00005282g0005.1 protein ; (*ITAG) Solyc12g010610.1.1 (e_value=6e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:3586920-3587634 transcript_region:SL2.40ch12:3586920..3587634- functional_description:"Unknown Protein (AHRD V1)"; NbS00015293g0001.1 protein NbS00016274g0001.1 protein ; (*GB) gi|359492624|ref|XP_002282319.2| (e_value=3e-38) PREDICTED: serine carboxypeptidase-like 40-like [Vitis vinifera];; (*SWP) sp|O82229|SCP23_ARATH (e_value=8e-29) Putative serine carboxypeptidase-like 23 OS=Arabidopsis thaliana GN=SCPL23 PE=2 SV=2;; (*TAIR) AT2G24010.1 (e_value=7e-30) | Symbols: scpl23 | serine carboxypeptidase-like 23 | chr2:10214714-10217542 FORWARD LENGTH=440;; (*ITAG) Solyc01g108480.1.1 (e_value=6e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87555280-87557636 transcript_region:SL2.40ch01:87555280..87557636- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00020603g0003.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=2e-26) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=4e-21) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbC23156211g0001.1 protein ; (*GB) gi|224086964|ref|XP_002308019.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41640.1 (e_value=1e-18) | Symbols: | Glycosyltransferase family 61 protein | chr2:17360654-17362391 FORWARD LENGTH=500;; (*ITAG) Solyc04g016180.2.1 (e_value=2e-26) genomic_reference:SL2.40ch04 gene_region:6913776-6916202 transcript_region:SL2.40ch04:6913776..6916202- go_terms:GO:0016757 functional_description:"Glycosyltransferase (AHRD V1 ***- Q5QPZ6_MEDTR); contains Interpro domain(s) IPR007657 Glycosyltransferase AER61, uncharacterised "; GO:0016757 NbS00002966g0001.1 protein NbS00001121g0002.1 protein NbS00020801g0002.1 protein NbS00007661g0003.1 protein NbS00030363g0001.1 protein NbC24069745g0001.1 protein NbC24628458g0001.1 protein ; (*GB) gi|302141987|emb|CBI19190.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M9E8|FB92_ARATH (e_value=3e-34) F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3;; (*TAIR) AT1G78280.1 (e_value=2e-35) | Symbols: | transferases, transferring glycosyl groups | chr1:29452823-29457118 FORWARD LENGTH=943;; (*ITAG) Solyc04g074490.2.1 (e_value=3e-36) genomic_reference:SL2.40ch04 gene_region:58075543-58086499 transcript_region:SL2.40ch04:58075543..58086499+ go_terms:GO:0016757 functional_description:"Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 (AHRD V1 *--- JMJD6_DANRE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0016757 NbC23531351g0001.1 protein ; (*ITAG) Solyc03g097290.2.1 (e_value=1e-23) genomic_reference:SL2.40ch03 gene_region:53059639-53073900 transcript_region:SL2.40ch03:53059639..53073900+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** C1EDP7_9CHLO); contains Interpro domain(s) IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal "; GO:0000049 NbS00032731g0004.1 protein ; (*GB) gi|224081266|ref|XP_002306359.1| (e_value=4e-99) predicted protein [Populus trichocarpa];; (*TAIR) AT2G21860.1 (e_value=1e-100) | Symbols: | violaxanthin de-epoxidase-related | chr2:9318333-9319990 REVERSE LENGTH=522;; (*ITAG) Solyc04g051610.2.1 (e_value=1e-18) genomic_reference:SL2.40ch04 gene_region:50055286-50057216 transcript_region:SL2.40ch04:50055286..50057216- functional_description:"Violaxanthin de-epoxidase-related protein (AHRD V1 ***- A8J136_CHLRE)"; NbS00015655g0004.1 protein ; (*GB) gi|224066765|ref|XP_002302204.1| (e_value=4e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|P50136|ODBA_MOUSE (e_value=4e-34) 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1;; (*TAIR) AT5G09300.1 (e_value=1e-52) | Symbols: | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886797 REVERSE LENGTH=472;; (*ITAG) Solyc06g059850.1.1 (e_value=9e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:34132230-34134435 transcript_region:SL2.40ch06:34132230..34134435- go_terms:GO:0003863 functional_description:"3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (AHRD V1 **** A1U0F1_MARAV); contains Interpro domain(s) IPR001017 Dehydrogenase, E1 component "; GO:0003863 NbS00049420g0001.1 protein NbS00049420g0003.1 protein ; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=3e-102) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|P0C894|PP143_ARATH (e_value=8e-39) Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1;; (*TAIR) AT2G02150.1 (e_value=6e-40) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:550340-552625 REVERSE LENGTH=761;; (*ITAG) Solyc05g012920.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6046907-6049585 transcript_region:SL2.40ch05:6046907..6049585- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEU3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00005258g0101.1 protein NbS00054539g0002.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=8e-18) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbC25209412g0001.1 protein ; (*GB) gi|255590973|ref|XP_002535407.1| (e_value=5e-39) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g121290.2.1 (e_value=1e-79) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00019584g0004.1 protein ; (*GB) gi|224100539|ref|XP_002311915.1| (e_value=5e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SSM2|MDLL_ARATH (e_value=8e-16) (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1;; (*TAIR) AT1G73050.1 (e_value=6e-17) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc03g123820.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00014972g0001.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=8e-50) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00014972g0003.1 protein ; (*ITAG) Solyc09g011290.1.1 (e_value=5e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:4619542-4620108 transcript_region:SL2.40ch09:4619542..4620108+ go_terms:GO:0030599 functional_description:"Invertase inhibitor homolog (AHRD V1 ***- O49603_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00034045g0001.1 protein NbC23222793g0001.1 protein ; (*GB) gi|255582781|ref|XP_002532166.1| (e_value=6e-34) Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis];; (*SWP) sp|Q941L0|CESA3_ARATH (e_value=3e-35) Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2;; (*TAIR) AT5G05170.1 (e_value=3e-36) | Symbols: CESA3, IXR1, ATCESA3, ATH-B, CEV1 | Cellulose synthase family protein | chr5:1530401-1535090 REVERSE LENGTH=1065;; (*ITAG) Solyc01g087210.2.1 (e_value=2e-36) genomic_reference:SL2.40ch01 gene_region:73892563-73901116 transcript_region:SL2.40ch01:73892563..73901116- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q6XP46_SOLTU); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00008748g0001.1 protein ; (*GB) gi|225434431|ref|XP_002277592.1| (e_value=0.0) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=4e-150) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=3e-151) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=2e-152) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00024440g0003.1 protein NbS00024440g0004.1 protein NbS00023816g0001.1 protein NbS00021221g0003.1 protein ; (*GB) gi|386799292|ref|YP_006291838.1| (e_value=2e-14) orf49 gene product (mitochondrion) [Daucus carota subsp. sativus]; NbS00002756g0004.1 protein NbS00002756g0006.1 protein NbS00007304g0004.1 protein ; (*GB) gi|350534880|ref|NP_001234676.1| (e_value=7e-57) uncharacterized protein LOC543709 [Solanum lycopersicum];; (*SWP) sp|Q5F3C1|DEGS1_CHICK (e_value=3e-37) Sphingolipid delta(4)-desaturase DES1 OS=Gallus gallus GN=DEGS1 PE=2 SV=1;; (*TAIR) AT4G04930.1 (e_value=3e-50) | Symbols: DES-1-LIKE | fatty acid desaturase family protein | chr4:2509236-2510918 FORWARD LENGTH=332;; (*ITAG) Solyc10g009030.2.1 (e_value=1e-59) genomic_reference:SL2.40ch10 gene_region:3056358-3059101 transcript_region:SL2.40ch10:3056358..3059101+ go_terms:GO:0042284 functional_description:"Sphingolipid delta 4 desaturase (AHRD V1 **** Q5AJX2_CANAL); contains Interpro domain(s) IPR011388 Sphingolipid delta4-desaturase IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site "; GO:0042284 NbS00007304g0006.1 protein ; (*GB) gi|358346683|ref|XP_003637395.1| (e_value=8e-21) hypothetical protein MTR_084s0018 [Medicago truncatula];; (*TAIR) AT4G21720.2 (e_value=4e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, male gametophyte, root, flower; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage. | chr4:11543762-11544274 FORWARD LENGTH=107;; (*ITAG) Solyc02g078430.2.1 (e_value=8e-43) genomic_reference:SL2.40ch02 gene_region:37689093-37690357 transcript_region:SL2.40ch02:37689093..37690357+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002181g0005.1 protein NbS00008415g0001.1 protein NbC23533691g0001.1 protein ; (*GB) gi|356531892|ref|XP_003534510.1| (e_value=3e-25) PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Glycine max];; (*TAIR) AT5G36230.1 (e_value=2e-25) | Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411;; (*ITAG) Solyc05g055770.2.1 (e_value=1e-28) genomic_reference:SL2.40ch05 gene_region:64423607-64429627 transcript_region:SL2.40ch05:64423607..64429627+ go_terms:GO:0031369 functional_description:"Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 **-- A8N5N1_COPC7); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0031369 NbS00040152g0002.1 protein ; (*GB) gi|224135477|ref|XP_002322083.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q949S9|SPF27_ARATH (e_value=3e-17) Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1;; (*TAIR) AT3G18165.1 (e_value=2e-18) | Symbols: MOS4 | modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253;; (*ITAG) Solyc03g119010.2.1 (e_value=7e-17) genomic_reference:SL2.40ch03 gene_region:61790538-61792835 transcript_region:SL2.40ch03:61790538..61792835- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SPF27 (AHRD V1 **-- D3PJ34_9MAXI); contains Interpro domain(s) IPR008409 Breast carcinoma amplified sequence 2 "; GO:0005515 NbS00015936g0001.1 protein NbS00022580g0001.1 protein ; (*GB) gi|297836246|ref|XP_002886005.1| (e_value=1e-15) hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SL79|CAF1P_ARATH (e_value=8e-13) CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2;; (*TAIR) AT2G20020.1 (e_value=6e-14) | Symbols: CAF1, ATCAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | chr2:8644464-8647090 FORWARD LENGTH=701;; (*ITAG) Solyc05g018240.2.1 (e_value=2e-35) genomic_reference:SL2.40ch05 gene_region:20269261-20278992 transcript_region:SL2.40ch05:20269261..20278992- go_terms:GO:0003723 functional_description:"CRS2-associated factor 1, chloroplastic (AHRD V1 ***- CAF1P_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00018551g0002.1 protein NbS00010603g0001.1 protein NbS00012357g0003.1 protein NbS00012357g0005.1 protein NbS00033593g0002.1 protein ; (*GB) gi|147845769|emb|CAN82202.1| (e_value=2e-83) hypothetical protein VITISV_011129 [Vitis vinifera];; (*SWP) sp|Q9SW95|SYNC2_ARATH (e_value=7e-74) Asparagine--tRNA ligase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2;; (*TAIR) AT3G07420.1 (e_value=5e-75) | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | asparaginyl-tRNA synthetase 2 | chr3:2374179-2376644 REVERSE LENGTH=638;; (*ITAG) Solyc09g057950.2.1 (e_value=2e-117) genomic_reference:SL2.40ch09 gene_region:48151506-48154469 transcript_region:SL2.40ch09:48151506..48154469+ go_terms:GO:0005515,GO:0004816 functional_description:"Asparaginyl-tRNA synthetase 2 (AHRD V1 **** D7L6K3_ARALY); contains Interpro domain(s) IPR018150 Aminoacyl-tRNA synthetase, class II (D, K and N)-like "; GO:0005515,GO:0004816 NbS00026772g0003.1 protein NbS00016729g0002.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=1e-18) hypothetical protein [Cucumis melo subsp. melo]; NbS00015428g0004.1 protein NbS00009268g0005.1 protein ; (*GB) gi|222617712|gb|EEE53844.1| (e_value=1e-18) hypothetical protein OsJ_00321 [Oryza sativa Japonica Group]; NbS00009268g0007.1 protein NbS00035332g0002.1 protein NbS00035332g0003.1 protein ; (*GB) gi|147804830|emb|CAN66879.1| (e_value=4e-17) hypothetical protein VITISV_028690 [Vitis vinifera]; NbS00028354g0001.1 protein ; (*GB) gi|297744300|emb|CBI37270.3| (e_value=4e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g061730.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:55813029-55815082 transcript_region:SL2.40ch09:55813029..55815082- functional_description:"Genomic DNA chromosome 3 TAC clone K7P8 (AHRD V1 ***- Q9LRY4_ARATH)"; NbS00015533g0001.1 protein ; (*GB) gi|359496332|ref|XP_002266757.2| (e_value=6e-39) PREDICTED: secretory carrier-associated membrane protein 3-like [Vitis vinifera];; (*SWP) sp|Q8H5X5|SCAM1_ORYSJ (e_value=1e-36) Secretory carrier-associated membrane protein 1 OS=Oryza sativa subsp. japonica GN=SCAMP1 PE=2 SV=1;; (*TAIR) AT1G61250.2 (e_value=2e-37) | Symbols: SC3 | secretory carrier 3 | chr1:22586035-22588519 FORWARD LENGTH=274;; (*ITAG) Solyc10g009180.2.1 (e_value=5e-45) genomic_reference:SL2.40ch10 gene_region:3177983-3185483 transcript_region:SL2.40ch10:3177983..3185483+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00031794g0003.1 protein NbS00015319g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-26) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00023367g0001.1 protein NbS00008252g0102.1 protein NbS00048356g0002.1 protein NbS00046407g0001.1 protein NbS00000995g0003.1 protein NbS00011642g0004.1 protein NbS00031396g0001.1 protein NbS00045385g0001.1 protein NbS00031042g0001.1 protein NbS00030037g0001.1 protein ; (*GB) gi|255555749|ref|XP_002518910.1| (e_value=4e-47) cystathionine gamma-synthase, putative [Ricinus communis];; (*TAIR) AT1G64660.1 (e_value=7e-43) | Symbols: ATMGL, MGL | methionine gamma-lyase | chr1:24028977-24030537 FORWARD LENGTH=441;; (*ITAG) Solyc08g083110.2.1 (e_value=7e-56) genomic_reference:SL2.40ch08 gene_region:62836223-62839810 transcript_region:SL2.40ch08:62836223..62839810+ go_terms:GO:0006520,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- D2LF58_RHOVA); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "; GO:0006520,GO:0030170 NbS00016360g0002.1 protein NbS00016360g0003.1 protein NbC24256027g0001.1 protein ; (*GB) gi|359488099|ref|XP_002266715.2| (e_value=6e-67) PREDICTED: ankyrin repeat domain-containing protein 13B-like [Vitis vinifera];; (*SWP) sp|Q5F259|AN13B_MOUSE (e_value=1e-16) Ankyrin repeat domain-containing protein 13B OS=Mus musculus GN=Ankrd13b PE=2 SV=1;; (*TAIR) AT3G04470.1 (e_value=5e-67) | Symbols: | Ankyrin repeat family protein | chr3:1189841-1191853 REVERSE LENGTH=640;; (*ITAG) Solyc05g054970.2.1 (e_value=5e-69) genomic_reference:SL2.40ch05 gene_region:63896453-63900703 transcript_region:SL2.40ch05:63896453..63900703- go_terms:GO:0030165 functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-** C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030165 NbC23749203g0001.1 protein ; (*TAIR) AT3G46980.2 (e_value=6e-13) | Symbols: PHT4;3 | phosphate transporter 4;3 | chr3:17307859-17309899 REVERSE LENGTH=469;; (*ITAG) Solyc09g031700.2.1 (e_value=3e-16) genomic_reference:SL2.40ch09 gene_region:23556457-23568316 transcript_region:SL2.40ch09:23556457..23568316- go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B6VRT1_LYMST); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00053942g0002.1 protein ; (*GB) gi|225429109|ref|XP_002269505.1| (e_value=1e-18) PREDICTED: uncharacterized protein LOC100251458 [Vitis vinifera];; (*TAIR) AT2G15530.3 (e_value=3e-15) | Symbols: | RING/U-box superfamily protein | chr2:6774150-6777068 FORWARD LENGTH=704;; (*ITAG) Solyc12g014070.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4889094-4892699 transcript_region:SL2.40ch12:4889094..4892699+ go_terms:GO:0008270 functional_description:"RING-finger protein-like (AHRD V1 ***- Q5QLR6_ORYSJ); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000588g0301.1 protein NbS00001931g0001.1 protein NbS00001931g0002.1 protein NbS00018712g0001.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=5e-13) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00001101g0002.1 protein ; (*GB) gi|147819144|emb|CAN78081.1| (e_value=0.0) hypothetical protein VITISV_021300 [Vitis vinifera];; (*SWP) sp|Q9ZVX5|PP156_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1;; (*TAIR) AT2G16880.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7312262-7314493 REVERSE LENGTH=743;; (*ITAG) Solyc01g111470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89453134-89456833 transcript_region:SL2.40ch01:89453134..89456833- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L879_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00025935g0001.1 protein NbS00019244g0001.1 protein NbS00014476g0002.1 protein NbS00041985g0002.1 protein NbS00023761g0002.1 protein ; (*GB) gi|298204395|emb|CBI16875.3| (e_value=1e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G15890.1 (e_value=3e-25) | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 | chr5:5187687-5189348 REVERSE LENGTH=526;; (*ITAG) Solyc02g065610.2.1 (e_value=4e-30) genomic_reference:SL2.40ch02 gene_region:31352956-31357159 transcript_region:SL2.40ch02:31352956..31357159- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00004270g0002.1 protein NbS00028131g0004.1 protein NbS00038326g0002.1 protein NbS00038326g0003.1 protein NbS00033032g0007.1 protein NbS00005937g0002.1 protein ; (*ITAG) Solyc03g097290.2.1 (e_value=3e-18) genomic_reference:SL2.40ch03 gene_region:53059639-53073900 transcript_region:SL2.40ch03:53059639..53073900+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** C1EDP7_9CHLO); contains Interpro domain(s) IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal "; GO:0000049 NbC23321587g0001.1 protein ; (*ITAG) Solyc08g082340.2.1 (e_value=6e-14) genomic_reference:SL2.40ch08 gene_region:62324773-62331770 transcript_region:SL2.40ch08:62324773..62331770+ go_terms:GO:0004366,GO:0005515 functional_description:"Glycerol-3-phosphate acyltransferase 3 (AHRD V1 **** GPAT3_HUMAN); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0005515 NbS00002151g0001.1 protein NbS00002151g0002.1 protein NbS00019267g0001.1 protein NbS00025979g0004.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00025979g0005.1 protein ; (*ITAG) Solyc11g065520.1.1 (e_value=6e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00047236g0003.1 protein NbS00012032g0002.1 protein NbS00012032g0004.1 protein NbS00012032g0005.1 protein NbC24399356g0001.1 protein ; (*GB) gi|224065851|ref|XP_002301973.1| (e_value=2e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LNU6|PPR53_ARATH (e_value=1e-42) Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2;; (*TAIR) AT1G20230.1 (e_value=9e-44) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:7009570-7011852 FORWARD LENGTH=760;; (*ITAG) Solyc11g005960.1.1 (e_value=4e-65) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:767352-769631 transcript_region:SL2.40ch11:767352..769631- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KIA6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC23727221g0001.1 protein ; (*GB) gi|350536667|ref|NP_001234770.1| (e_value=5e-50) dihydrolipoamide dehydrogenase precursor [Solanum lycopersicum];; (*SWP) sp|Q9M5K2|DLDH2_ARATH (e_value=3e-46) Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1;; (*TAIR) AT3G17240.3 (e_value=3e-47) | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5890278-5892166 REVERSE LENGTH=507;; (*ITAG) Solyc05g053300.2.1 (e_value=9e-53) genomic_reference:SL2.40ch05 gene_region:62572547-62577624 transcript_region:SL2.40ch05:62572547..62577624+ go_terms:GO:0005515 functional_description:"Dihydrolipoyl dehydrogenase (AHRD V1 ***- Q8GT30_SOLLC); contains Interpro domain(s) IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site IPR006258 Dihydrolipoamide dehydrogenase "; GO:0005515 NbS00008857g0002.1 protein NbS00004935g0001.1 protein ; (*GB) gi|356557323|ref|XP_003546966.1| (e_value=9e-33) PREDICTED: uncharacterized protein LOC100794867 [Glycine max];; (*SWP) sp|Q9LX47|FDL46_ARATH (e_value=1e-17) Putative F-box/FBD/LRR-repeat protein At3g59240 OS=Arabidopsis thaliana GN=At3g59240 PE=4 SV=1;; (*TAIR) AT3G59240.1 (e_value=1e-18) | Symbols: | RNI-like superfamily protein | chr3:21898682-21900364 REVERSE LENGTH=504;; (*ITAG) Solyc03g121290.2.1 (e_value=4e-34) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033252g0001.1 protein ; (*GB) gi|356525790|ref|XP_003531506.1| (e_value=6e-61) PREDICTED: nitrile-specifier protein 5-like [Glycine max];; (*SWP) sp|Q93XW5|NSP5_ARATH (e_value=3e-42) Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1;; (*TAIR) AT3G07720.1 (e_value=8e-58) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329;; (*ITAG) Solyc05g024410.2.1 (e_value=3e-71) genomic_reference:SL2.40ch05 gene_region:31650811-31654017 transcript_region:SL2.40ch05:31650811..31654017+ functional_description:"Kelch-like protein 9 (AHRD V1 ***- KLHL9_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00002722g0002.1 protein NbS00058435g0002.1 protein ; (*GB) gi|356550082|ref|XP_003543419.1| (e_value=3e-14) PREDICTED: uncharacterized protein LOC100780672 [Glycine max];; (*ITAG) Solyc11g068900.1.1 (e_value=7e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50552542-50553312 transcript_region:SL2.40ch11:50552542..50553312- functional_description:"Harpin-induced protein 1 containing protein expressed (AHRD V1 *-*- Q2RAC3_ORYSJ); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00016183g0001.1 protein NbS00016183g0002.1 protein NbS00024612g0001.1 protein NbC24239783g0001.1 protein ; (*GB) gi|357157167|ref|XP_003577708.1| (e_value=9e-21) PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Brachypodium distachyon];; (*SWP) sp|P45975|SUV39_DROME (e_value=5e-19) Histone-lysine N-methyltransferase Su(var)3-9 OS=Drosophila melanogaster GN=Su(var)3-9 PE=1 SV=2;; (*TAIR) AT1G04170.1 (e_value=2e-21) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=6e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbC24328456g0001.1 protein ; (*GB) gi|255559372|ref|XP_002520706.1| (e_value=6e-18) stromal antigen, putative [Ricinus communis];; (*TAIR) AT2G47980.1 (e_value=8e-19) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=1e-23) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbC25351445g0001.1 protein ; (*GB) gi|224135459|ref|XP_002327223.1| (e_value=6e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJB4|GDL34_ARATH (e_value=3e-15) GDSL esterase/lipase At2g04570 OS=Arabidopsis thaliana GN=At2g04570 PE=2 SV=1;; (*TAIR) AT2G04570.1 (e_value=3e-16) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr2:1594747-1596129 FORWARD LENGTH=350;; (*ITAG) Solyc06g065530.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:37300109-37303848 transcript_region:SL2.40ch06:37300109..37303848- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00006826g0001.1 protein ; (*GB) gi|14599435|emb|CAC43859.1| (e_value=2e-84) urease [Solanum tuberosum];; (*SWP) sp|P07374|UREA_CANEN (e_value=1e-53) Urease OS=Canavalia ensiformis PE=1 SV=3;; (*TAIR) AT1G67550.1 (e_value=1e-65) | Symbols: URE | urease | chr1:25312842-25316911 FORWARD LENGTH=838;; (*ITAG) Solyc05g014970.2.1 (e_value=5e-87) genomic_reference:SL2.40ch05 gene_region:9174845-9187506 transcript_region:SL2.40ch05:9174845..9187506- go_terms:GO:0009039 functional_description:"Urease alpha subunit (AHRD V1 **** A3YCE1_9GAMM); contains Interpro domain(s) IPR008221 Urease IPR005848 Urease, alpha subunit "; GO:0009039 NbC24770967g0001.1 protein ; (*ITAG) Solyc12g044640.1.1 (e_value=6e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45137898-45142570 transcript_region:SL2.40ch12:45137898..45142570- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 6 (AHRD V1 *-*- C1C411_RANCA); contains Interpro domain(s) IPR016820 Mediator complex, subunit Med6, metazoa/plant "; GO:0016592 NbC26129757g0002.1 protein ; (*GB) gi|297828814|ref|XP_002882289.1| (e_value=1e-63) hypothetical protein ARALYDRAFT_340491 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G03940.1 (e_value=2e-58) | Symbols: | Protein kinase family protein | chr3:1014412-1018244 REVERSE LENGTH=701;; (*ITAG) Solyc10g080700.1.1 (e_value=1e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61235895-61241600 transcript_region:SL2.40ch10:61235895..61241600- go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9FK52_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00054740g0001.1 protein NbS00040208g0004.1 protein NbS00003886g0201.1 protein NbS00003886g0202.1 protein NbC26264841g0001.1 protein ; (*GB) gi|255577366|ref|XP_002529563.1| (e_value=1e-23) Breast carcinoma amplified sequence, putative [Ricinus communis];; (*SWP) sp|Q949S9|SPF27_ARATH (e_value=6e-24) Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1;; (*TAIR) AT3G18165.1 (e_value=4e-25) | Symbols: MOS4 | modifier of snc1,4 | chr3:6223248-6225076 FORWARD LENGTH=253;; (*ITAG) Solyc03g119010.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:61790538-61792835 transcript_region:SL2.40ch03:61790538..61792835- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor SPF27 (AHRD V1 **-- D3PJ34_9MAXI); contains Interpro domain(s) IPR008409 Breast carcinoma amplified sequence 2 "; GO:0005515 NbS00026128g0002.1 protein NbS00013791g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=9e-29) hypothetical protein [Cucumis melo subsp. melo]; NbS00029459g0001.1 protein ; (*GB) gi|356527538|ref|XP_003532366.1| (e_value=6e-26) PREDICTED: filament-like plant protein 3-like [Glycine max];; (*SWP) sp|Q9MA92|FPP3_ARATH (e_value=2e-16) Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2;; (*TAIR) AT3G05270.2 (e_value=1e-17) | Symbols: | Plant protein of unknown function (DUF869) | chr3:1500803-1502926 REVERSE LENGTH=615;; (*ITAG) Solyc12g068070.1.1 (e_value=3e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:54518644-54522087 transcript_region:SL2.40ch12:54518644..54522087- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbC23909974g0001.1 protein ; (*GB) gi|359476253|ref|XP_002280119.2| (e_value=4e-30) PREDICTED: serine/threonine-protein kinase CBK1 [Vitis vinifera];; (*TAIR) AT4G33080.2 (e_value=1e-28) | Symbols: | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein | chr4:15960146-15964296 FORWARD LENGTH=507;; (*ITAG) Solyc08g062670.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00037677g0001.1 protein NbS00057832g0001.1 protein NbS00026871g0001.1 protein NbS00034509g0001.1 protein ; (*GB) gi|297790840|ref|XP_002863305.1| (e_value=6e-23) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*ITAG) Solyc11g021160.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13374126-13374965 transcript_region:SL2.40ch11:13374126..13374965+ functional_description:"Unknown Protein (AHRD V1)"; NbC26152230g0001.1 protein ; (*GB) gi|359477166|ref|XP_003631945.1| (e_value=9e-153) PREDICTED: uncharacterized protein LOC100246622 isoform 2 [Vitis vinifera];; (*TAIR) AT4G16070.2 (e_value=4e-146) | Symbols: | Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 | chr4:9096808-9100596 REVERSE LENGTH=646;; (*ITAG) Solyc03g122290.2.1 (e_value=7e-25) genomic_reference:SL2.40ch03 gene_region:64213482-64217360 transcript_region:SL2.40ch03:64213482..64217360+ go_terms:GO:0006629 functional_description:"Lipase family protein expressed (AHRD V1 ***- Q2QNT9_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbC26110323g0001.1 protein NbS00026717g0005.1 protein NbS00020458g0001.1 protein NbS00022303g0001.1 protein NbS00016649g0003.1 protein NbS00027964g0001.1 protein ; (*GB) gi|147845438|emb|CAN83350.1| (e_value=1e-27) hypothetical protein VITISV_021959 [Vitis vinifera];; (*SWP) sp|Q9ZUA5|VIT1_ARATH (e_value=3e-28) Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1;; (*TAIR) AT2G01770.1 (e_value=2e-29) | Symbols: VIT1, ATVIT1 | vacuolar iron transporter 1 | chr2:334775-336425 REVERSE LENGTH=250;; (*ITAG) Solyc04g008060.2.1 (e_value=4e-34) genomic_reference:SL2.40ch04 gene_region:1717764-1721092 transcript_region:SL2.40ch04:1717764..1721092- go_terms:GO:0015093 functional_description:"Vacuolar iron transporter Ccc1 (AHRD V1 **-* C5GIS5_AJEDR); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; GO:0015093 NbS00011911g0001.1 protein NbS00041986g0001.1 protein NbS00024715g0002.1 protein NbS00015172g0002.1 protein NbS00057526g0001.1 protein ; (*GB) gi|147819144|emb|CAN78081.1| (e_value=0.0) hypothetical protein VITISV_021300 [Vitis vinifera];; (*SWP) sp|Q9ZVX5|PP156_ARATH (e_value=3e-140) Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1;; (*TAIR) AT2G16880.1 (e_value=2e-141) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7312262-7314493 REVERSE LENGTH=743;; (*ITAG) Solyc01g111470.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:89453134-89456833 transcript_region:SL2.40ch01:89453134..89456833- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L879_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00044905g0002.1 protein ; (*ITAG) Solyc02g069000.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33535074-33535589 transcript_region:SL2.40ch02:33535074..33535589- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005622 NbS00006637g0001.1 protein NbS00009571g0001.1 protein NbS00025876g0002.1 protein NbS00032001g0003.1 protein NbS00001941g0001.1 protein NbS00001941g0003.1 protein NbS00001941g0004.1 protein NbS00001521g0003.1 protein ; (*GB) gi|255565913|ref|XP_002523945.1| (e_value=4e-67) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q6Z3U3|Y7797_ORYSJ (e_value=3e-45) B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1;; (*TAIR) AT2G30470.1 (e_value=2e-34) | Symbols: HSI2, VAL1 | high-level expression of sugar-inducible gene 2 | chr2:12980904-12984724 REVERSE LENGTH=790;; (*ITAG) Solyc06g082520.2.1 (e_value=4e-98) genomic_reference:SL2.40ch06 gene_region:44592516-44602333 transcript_region:SL2.40ch06:44592516..44602333- go_terms:GO:0005515,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0016564 NbS00038779g0001.1 protein NbS00030717g0003.1 protein NbS00021861g0001.1 protein NbS00027586g0001.1 protein ; (*GB) gi|359488185|ref|XP_002279980.2| (e_value=1e-56) PREDICTED: HEAT repeat-containing protein 5B-like [Vitis vinifera];; (*TAIR) AT1G67140.1 (e_value=7e-49) | Symbols: SWEETIE | HEAT repeat-containing protein | chr1:25101016-25117372 REVERSE LENGTH=2221;; (*ITAG) Solyc02g085810.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:43160538-43191828 transcript_region:SL2.40ch02:43160538..43191828+ go_terms:GO:0005488 functional_description:"HEAT repeat containing 5B (AHRD V1 *--- B9EK47_HUMAN); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00006932g0001.1 protein NbS00006932g0002.1 protein NbS00006932g0102.1 protein NbS00017349g0003.1 protein NbS00017349g0006.1 protein NbS00042291g0001.1 protein NbS00042291g0002.1 protein NbS00011141g0002.1 protein NbS00001873g0005.1 protein NbS00005746g0001.1 protein ; (*GB) gi|71000457|dbj|BAE07178.1| (e_value=2e-41) phosphoethanolamine N-methyltransferase [Beta vulgaris];; (*SWP) sp|Q9M571|PEAMT_SPIOL (e_value=6e-42) Phosphoethanolamine N-methyltransferase OS=Spinacia oleracea GN=PEAMT PE=1 SV=1;; (*TAIR) AT3G18000.1 (e_value=2e-40) | Symbols: NMT1, XPL1, PEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr3:6154578-6157331 FORWARD LENGTH=491;; (*ITAG) Solyc12g040790.1.1 (e_value=8e-49) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:40668207-40671881 transcript_region:SL2.40ch12:40668207..40671881- go_terms:GO:0008152 functional_description:"Menaquinone biosynthesis methyltransferase ubiE (AHRD V1 *-*- UBIE_LISMH); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00007282g0001.1 protein NbS00013168g0002.1 protein ; (*GB) gi|357483401|ref|XP_003611987.1| (e_value=6e-26) hypothetical protein MTR_5g020060 [Medicago truncatula];; (*TAIR) AT5G66780.1 (e_value=5e-27) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:26663627-26664196 FORWARD LENGTH=121;; (*ITAG) Solyc02g085330.1.1 (e_value=9e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:42827589-42829260 transcript_region:SL2.40ch02:42827589..42829260- functional_description:"AT5g66780/MUD21_2 (AHRD V1 ***- Q9FL02_ARATH)"; NbS00014747g0001.1 protein ; (*GB) gi|255537385|ref|XP_002509759.1| (e_value=2e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G15050.1 (e_value=3e-24) | Symbols: | Protein of Unknown Function (DUF239) | chr4:8588548-8590345 REVERSE LENGTH=396;; (*ITAG) Solyc07g056690.1.1 (e_value=1e-61) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61810691-61815877 transcript_region:SL2.40ch07:61810691..61815877- go_terms:GO:0005515 functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6TV70_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00001056g0001.1 protein ; (*GB) gi|359491697|ref|XP_002281830.2| (e_value=1e-77) PREDICTED: uncharacterized protein LOC100244920 [Vitis vinifera];; (*TAIR) AT1G18700.3 (e_value=9e-46) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr1:6437591-6443046 FORWARD LENGTH=695;; (*ITAG) Solyc03g115840.2.1 (e_value=3e-142) genomic_reference:SL2.40ch03 gene_region:59476727-59495450 transcript_region:SL2.40ch03:59476727..59495450- go_terms:GO:0031072 functional_description:"DnaJ homolog subfamily C member 10 (AHRD V1 *-*- DJC10_RAT); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00053738g0001.1 protein NbS00007048g0001.1 protein NbS00013695g0002.1 protein NbS00006204g0001.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-26) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=4e-75) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00006204g0003.1 protein NbS00039085g0001.1 protein ; (*ITAG) Solyc04g015530.1.1 (e_value=7e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:5756603-5764191 transcript_region:SL2.40ch04:5756603..5764191+ go_terms:GO:0004650 functional_description:"Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0004650 NbS00011769g0003.1 protein NbS00007348g0001.1 protein NbS00011563g0004.1 protein NbS00045324g0001.1 protein ; (*GB) gi|359475200|ref|XP_002282080.2| (e_value=2e-34) PREDICTED: B3 domain-containing protein At3g19184-like [Vitis vinifera];; (*SWP) sp|Q1G3M3|Y3918_ARATH (e_value=5e-33) B3 domain-containing protein At3g19184 OS=Arabidopsis thaliana GN=At3g19184 PE=2 SV=1;; (*TAIR) AT3G19184.1 (e_value=4e-34) | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637555-6639035 FORWARD LENGTH=277;; (*ITAG) Solyc01g108140.2.1 (e_value=3e-44) genomic_reference:SL2.40ch01 gene_region:87261228-87266226 transcript_region:SL2.40ch01:87261228..87266226+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein At3g19184 (AHRD V1 ***- Y3918_ARATH); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00028343g0004.1 protein NbS00000017g0002.1 protein ; (*GB) gi|224073762|ref|XP_002304160.1| (e_value=9e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C1X1|PWP2_SCHPO (e_value=3e-22) Periodic tryptophan protein 2 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.04c PE=1 SV=1;; (*TAIR) AT1G15440.2 (e_value=9e-34) | Symbols: PWP2 | periodic tryptophan protein 2 | chr1:5306159-5309460 REVERSE LENGTH=860;; (*ITAG) Solyc03g120080.2.1 (e_value=3e-40) genomic_reference:SL2.40ch03 gene_region:62626896-62632505 transcript_region:SL2.40ch03:62626896..62632505+ go_terms:GO:0030515 functional_description:"Periodic tryptophan protein 2 (AHRD V1 **-- D0MSR7_PHYIN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00011439g0003.1 protein ; (*ITAG) Solyc06g051580.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:31587672-31589627 transcript_region:SL2.40ch06:31587672..31589627+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015644g0004.1 protein NbS00023932g0002.1 protein NbS00032481g0001.1 protein NbS00016859g0001.1 protein NbS00016041g0004.1 protein NbS00021134g0001.1 protein NbS00003051g0001.1 protein NbS00008143g0001.1 protein NbC26245065g0001.1 protein NbC26245065g0002.1 protein NbS00008332g0001.1 protein ; (*GB) gi|225465300|ref|XP_002269047.1| (e_value=0.0) PREDICTED: uncharacterized mitochondrial protein ymf11-like [Vitis vinifera];; (*SWP) sp|P38456|YMF11_MARPO (e_value=7e-36) Uncharacterized mitochondrial protein ymf11 OS=Marchantia polymorpha GN=YMF11 PE=4 SV=1;; (*TAIR) AT5G46920.1 (e_value=0.0) | Symbols: | Intron maturase, type II family protein | chr5:19053668-19055875 FORWARD LENGTH=735; NbS00016277g0002.1 protein NbS00026882g0001.1 protein NbS00013267g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-54) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00040008g0001.1 protein NbS00026864g0101.1 protein NbS00018081g0006.1 protein NbS00006807g0003.1 protein NbS00030450g0005.1 protein ; (*GB) gi|359476463|ref|XP_003631844.1| (e_value=5e-41) PREDICTED: uncharacterized protein LOC100853048 [Vitis vinifera];; (*TAIR) AT3G02680.1 (e_value=1e-28) | Symbols: NBS1, ATNBS1 | nijmegen breakage syndrome 1 | chr3:576378-579226 FORWARD LENGTH=542;; (*ITAG) Solyc02g081520.2.1 (e_value=9e-48) genomic_reference:SL2.40ch02 gene_region:40021708-40034066 transcript_region:SL2.40ch02:40021708..40034066- go_terms:GO:0005622 functional_description:"Nibrin (AHRD V1 *--- Q3SZL4_BOVIN); contains Interpro domain(s) IPR000253 Forkhead-associated "; GO:0005622 NbS00056344g0003.1 protein NbS00021384g0004.1 protein ; (*ITAG) Solyc01g096060.2.1 (e_value=9e-17) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00020335g0001.1 protein NbS00041743g0001.1 protein ; (*GB) gi|255554603|ref|XP_002518340.1| (e_value=5e-52) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g106530.1.1 (e_value=2e-127) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:86139120-86140250 transcript_region:SL2.40ch01:86139120..86140250+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005174 Protein of unknown function DUF295 "; NbS00028917g0001.1 protein ; (*GB) gi|225444936|ref|XP_002282302.1| (e_value=2e-24) PREDICTED: PCI domain-containing protein 2 [Vitis vinifera];; (*TAIR) AT2G19560.1 (e_value=9e-23) | Symbols: EER5 | proteasome family protein | chr2:8465924-8469069 REVERSE LENGTH=413;; (*ITAG) Solyc07g039210.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:42924002-42930110 transcript_region:SL2.40ch07:42924002..42930110- go_terms:GO:0005515,GO:0047499 functional_description:"PCI domain-containing protein 2 homolog (AHRD V1 **-- PCID2_DROME); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515,GO:0047499 NbS00018862g0001.1 protein NbS00013709g0002.1 protein ; (*GB) gi|357520061|ref|XP_003630319.1| (e_value=9e-42) BC10 protein [Medicago truncatula];; (*TAIR) AT5G14550.1 (e_value=2e-37) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4691321-4693732 REVERSE LENGTH=377;; (*ITAG) Solyc02g086550.2.1 (e_value=3e-58) genomic_reference:SL2.40ch02 gene_region:43791778-43797970 transcript_region:SL2.40ch02:43791778..43797970- go_terms:GO:0005515 functional_description:"Os06g0661900 protein (Fragment) (AHRD V1 ***- Q0DAD0_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; GO:0005515 NbC24094968g0001.1 protein ; (*GB) gi|156229392|emb|CAM28208.1| (e_value=1e-56) Ran GTPase activating protein [Nicotiana benthamiana];; (*SWP) sp|Q9LE82|RAGP1_ARATH (e_value=5e-42) RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1;; (*TAIR) AT3G63130.2 (e_value=4e-43) | Symbols: RANGAP1 | RAN GTPase activating protein 1 | chr3:23325108-23326715 FORWARD LENGTH=535;; (*ITAG) Solyc09g065190.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:58708850-58710454 transcript_region:SL2.40ch09:58708850..58710454- go_terms:GO:0005515,GO:0005098 functional_description:"Ran GTPase-activating protein 1 (AHRD V1 **-* A7M8K3_SOLTU); contains Interpro domain(s) IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype "; GO:0005515,GO:0005098 NbC25026368g0001.1 protein ; (*ITAG) Solyc11g069160.1.1 (e_value=4e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00003511g0101.1 protein NbC24077855g0001.1 protein ; (*GB) gi|9858780|gb|AAG01127.1|AF273333_12 (e_value=1e-28) BAC19.12 [Solanum lycopersicum];; (*TAIR) AT3G50700.1 (e_value=3e-11) | Symbols: AtIDD2, IDD2 | indeterminate(ID)-domain 2 | chr3:18840945-18842829 FORWARD LENGTH=452;; (*ITAG) Solyc02g085580.2.1 (e_value=3e-31) genomic_reference:SL2.40ch02 gene_region:42989617-42992448 transcript_region:SL2.40ch02:42989617..42992448+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU5_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00000705g0002.1 protein NbS00015387g0002.1 protein NbS00013502g0001.1 protein NbS00025425g0003.1 protein NbS00001586g0003.1 protein NbC23649819g0001.1 protein ; (*GB) gi|224136620|ref|XP_002326905.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SX85|SEC3A_ARATH (e_value=1e-21) Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1;; (*TAIR) AT1G47550.1 (e_value=8e-23) | Symbols: SEC3A | exocyst complex component sec3A | chr1:17457171-17463896 FORWARD LENGTH=887;; (*ITAG) Solyc07g025170.2.1 (e_value=4e-31) genomic_reference:SL2.40ch07 gene_region:26176702-26189084 transcript_region:SL2.40ch07:26176702..26189084- functional_description:"Exocyst complex component 1 (AHRD V1 *-*- Q6P1Y9_MOUSE); contains Interpro domain(s) IPR019160 Exocyst complex, component Exoc1 "; NbS00036430g0001.1 protein NbS00036430g0002.1 protein ; (*GB) gi|384939176|emb|CBL52023.1| (e_value=2e-16) hypothetical protein (mitochondrion) [Beta vulgaris subsp. maritima]; NbS00015539g0002.1 protein ; (*GB) gi|255537443|ref|XP_002509788.1| (e_value=3e-30) synaptotagmin, putative [Ricinus communis];; (*TAIR) AT4G11610.1 (e_value=3e-29) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr4:7013956-7017846 REVERSE LENGTH=1011;; (*ITAG) Solyc08g008020.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:2518581-2521583 transcript_region:SL2.40ch08:2518581..2521583+ functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00015539g0005.1 protein NbS00006197g0005.1 protein ; (*GB) gi|225434618|ref|XP_002279321.1| (e_value=2e-86) PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera];; (*SWP) sp|Q9SD61|C3H42_ARATH (e_value=4e-80) Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1;; (*TAIR) AT3G47120.1 (e_value=3e-81) | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:17351334-17352769 REVERSE LENGTH=352;; (*ITAG) Solyc03g119430.2.1 (e_value=4e-92) genomic_reference:SL2.40ch03 gene_region:62095946-62099039 transcript_region:SL2.40ch03:62095946..62099039- go_terms:GO:0003676,GO:0008270,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q9Y6G0_HUMAN); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0008270,GO:0000166 NbS00010472g0003.1 protein NbS00040759g0001.1 protein ; (*GB) gi|356527534|ref|XP_003532364.1| (e_value=5e-31) PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase C1, chloroplastic/mitochondrial-like [Glycine max];; (*SWP) sp|Q8GXR9|DHNA_ARATH (e_value=1e-29) NADH dehydrogenase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2;; (*TAIR) AT5G08740.1 (e_value=1e-28) | Symbols: NDC1 | NAD(P)H dehydrogenase C1 | chr5:2848752-2851323 REVERSE LENGTH=519;; (*ITAG) Solyc03g043750.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:11261685-11271541 transcript_region:SL2.40ch03:11261685..11271541+ go_terms:GO:0003954 functional_description:"FAD-dependent pyridine nucleotide-disulphide oxidoreductase (AHRD V1 ***- A0YND6_LYNSP); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0003954 NbS00010195g0001.1 protein NbS00010195g0002.1 protein ; (*GB) gi|255538530|ref|XP_002510330.1| (e_value=3e-28) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=7e-15) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=6e-16) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=1e-77) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00030362g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-24) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00036349g0002.1 protein NbS00036349g0003.1 protein NbS00001082g0001.1 protein ; (*GB) gi|255571736|ref|XP_002526811.1| (e_value=9e-26) protein with unknown function [Ricinus communis];; (*TAIR) AT1G35530.2 (e_value=6e-27) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390;; (*ITAG) Solyc11g020760.1.1 (e_value=1e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11968644-11975150 transcript_region:SL2.40ch11:11968644..11975150+ go_terms:GO:0005524 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbC23268017g0001.1 protein ; (*GB) gi|147817752|emb|CAN66660.1| (e_value=2e-20) hypothetical protein VITISV_031720 [Vitis vinifera];; (*TAIR) AT1G74390.2 (e_value=3e-18) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr1:27961760-27963826 REVERSE LENGTH=495;; (*ITAG) Solyc12g036220.1.1 (e_value=6e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:29868498-29873746 transcript_region:SL2.40ch12:29868498..29873746+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00039218g0001.1 protein NbS00046497g0001.1 protein ; (*GB) gi|147866249|emb|CAN82045.1| (e_value=2e-40) hypothetical protein VITISV_026200 [Vitis vinifera];; (*TAIR) AT5G64460.5 (e_value=3e-39) | Symbols: | Phosphoglycerate mutase family protein | chr5:25773009-25774672 REVERSE LENGTH=201;; (*ITAG) Solyc04g076830.2.1 (e_value=5e-36) genomic_reference:SL2.40ch04 gene_region:59295163-59304028 transcript_region:SL2.40ch04:59295163..59304028- functional_description:"Phosphoglycerate mutase-like protein (AHRD V1 ***- Q8LGT8_SOYBN); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; NbC23809683g0001.1 protein ; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=4e-44) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=1e-45) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=4e-34) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=4e-45) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00051118g0001.1 protein NbS00058939g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-39) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00000990g0001.1 protein NbS00011740g0002.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=2e-13) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC24044300g0001.1 protein ; (*GB) gi|255553905|ref|XP_002517993.1| (e_value=1e-38) vacuolar membrane protein pep3, putative [Ricinus communis];; (*SWP) sp|Q8R307|VPS18_MOUSE (e_value=1e-16) Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2;; (*TAIR) AT1G12470.1 (e_value=9e-40) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=1e-41) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00015676g0001.1 protein ; (*GB) gi|297739580|emb|CBI29762.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G22940.1 (e_value=4e-18) | Symbols: TH1, TH-1, THIE | thiamin biosynthesis protein, putative | chr1:8122384-8124908 FORWARD LENGTH=522;; (*ITAG) Solyc01g103950.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:84184010-84191008 transcript_region:SL2.40ch01:84184010..84191008- go_terms:GO:0008152,GO:0009228 functional_description:"Thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase (AHRD V1 **-- A9NB66_COXBR); contains Interpro domain(s) IPR004399 Phosphomethylpyrimidine kinase type-2 "; GO:0008152,GO:0009228 NbS00027956g0003.1 protein NbC25114498g0001.1 protein ; (*GB) gi|225430760|ref|XP_002266788.1| (e_value=1e-54) PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Vitis vinifera];; (*SWP) sp|Q68FT3|PYRD2_RAT (e_value=6e-30) Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1;; (*TAIR) AT5G49555.1 (e_value=2e-52) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr5:20107411-20110602 REVERSE LENGTH=556;; (*ITAG) Solyc02g085250.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:42789344-42799166 transcript_region:SL2.40ch02:42789344..42799166- go_terms:GO:0016491 functional_description:"FAD dependent oxidoreductase (AHRD V1 **-- A6CBH0_9PLAN); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00002363g0001.1 protein ; (*GB) gi|224085047|ref|XP_002307469.1| (e_value=9e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|O49289|RH29_ARATH (e_value=2e-11) Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1;; (*TAIR) AT1G77030.1 (e_value=2e-12) | Symbols: | hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases | chr1:28947887-28951526 REVERSE LENGTH=845;; (*ITAG) Solyc10g009070.2.1 (e_value=1e-25) genomic_reference:SL2.40ch10 gene_region:3093051-3105113 transcript_region:SL2.40ch10:3093051..3105113- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q8JGR2_DANRE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00008905g0001.1 protein ; (*GB) gi|356508987|ref|XP_003523234.1| (e_value=2e-37) PREDICTED: high mobility group B protein 9-like [Glycine max];; (*SWP) sp|Q9SGS2|HMGB9_ARATH (e_value=7e-34) High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9 PE=2 SV=1;; (*TAIR) AT1G76110.1 (e_value=5e-35) | Symbols: | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:28555287-28557465 REVERSE LENGTH=338;; (*ITAG) Solyc12g094440.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62989670-62995019 transcript_region:SL2.40ch12:62989670..62995019- go_terms:GO:0005634,GO:0005622 functional_description:"High mobility group family (Fragment) (AHRD V1 **-- B9GFX2_POPTR); contains Interpro domain(s) IPR001606 AT-rich interaction region "; GO:0005634,GO:0005622 NbS00038719g0004.1 protein NbS00022619g0001.1 protein ; (*GB) gi|297733723|emb|CBI14970.3| (e_value=1e-17) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g071680.2.1 (e_value=8e-29) genomic_reference:SL2.40ch06 gene_region:40535499-40540003 transcript_region:SL2.40ch06:40535499..40540003- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9I3D0_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00022619g0005.1 protein NbS00059493g0001.1 protein ; (*GB) gi|255576192|ref|XP_002528990.1| (e_value=1e-119) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q5HZH2|TSR3_MOUSE (e_value=6e-62) Probable ribosome biogenesis protein C16orf42 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G10070.1 (e_value=1e-108) | Symbols: | RNase L inhibitor protein-related | chr5:3148684-3150324 REVERSE LENGTH=264; NbS00006035g0001.1 protein NbS00027598g0001.1 protein NbC23786187g0001.1 protein ; (*GB) gi|319718165|gb|ADV59384.1| (e_value=2e-59) GAGA-binding transcriptional activator [Nicotiana tabacum];; (*SWP) sp|F4JUI3|BPC5_ARATH (e_value=8e-42) Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1;; (*TAIR) AT4G38910.1 (e_value=2e-44) | Symbols: BPC5, BBR/BPC5, ATBPC5 | basic pentacysteine 5 | chr4:18145478-18146254 REVERSE LENGTH=258;; (*ITAG) Solyc02g084230.1.1 (e_value=4e-59) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41967741-41968607 transcript_region:SL2.40ch02:41967741..41968607- go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00005007g0004.1 protein NbS00005007g0102.1 protein NbS00005007g0203.1 protein NbS00003016g0001.1 protein NbS00026010g0002.1 protein NbS00023432g0001.1 protein ; (*GB) gi|147865236|emb|CAN81954.1| (e_value=1e-19) hypothetical protein VITISV_014020 [Vitis vinifera];; (*TAIR) AT3G42170.1 (e_value=6e-14) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc03g116840.1.1 (e_value=1e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbC25563603g0001.1 protein ; (*GB) gi|255570779|ref|XP_002526342.1| (e_value=5e-23) ATP synthase D chain, mitochondrial, putative [Ricinus communis];; (*SWP) sp|Q9FT52|ATP5H_ARATH (e_value=8e-22) ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3;; (*TAIR) AT3G52300.1 (e_value=6e-23) | Symbols: ATPQ | ATP synthase D chain, mitochondrial | chr3:19396689-19398119 FORWARD LENGTH=168;; (*ITAG) Solyc11g072450.1.1 (e_value=2e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52705683-52710449 transcript_region:SL2.40ch11:52705683..52710449- go_terms:GO:0000276 functional_description:"Mitochondrial F0 ATP synthase D chain (AHRD V1 ***- B3TLP5_ELAGV); contains Interpro domain(s) IPR008689 ATPase, F0 complex, subunit D, mitochondrial "; GO:0000276 NbS00046316g0002.1 protein ; (*GB) gi|255584503|ref|XP_002532980.1| (e_value=7e-34) catalytic, putative [Ricinus communis];; (*TAIR) AT1G30300.1 (e_value=3e-34) | Symbols: | Metallo-hydrolase/oxidoreductase superfamily protein | chr1:10673084-10675061 FORWARD LENGTH=324;; (*ITAG) Solyc08g023500.2.1 (e_value=6e-28) genomic_reference:SL2.40ch08 gene_region:16931268-16942383 transcript_region:SL2.40ch08:16931268..16942383+ go_terms:GO:0003824 functional_description:"Metal-dependent hydrolase beta-lactamase family (AHRD V1 **-- Q26E97_FLABB); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0003824 NbS00045963g0001.1 protein ; (*ITAG) Solyc09g009160.1.1 (e_value=1e-43) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:2493689-2496994 transcript_region:SL2.40ch09:2493689..2496994+ functional_description:"Aminotransferase-like (AHRD V1 *-*- Q5JJS3_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00045646g0001.1 protein NbS00017132g0004.1 protein NbS00015668g0001.1 protein NbS00000318g0201.1 protein NbS00002525g0005.1 protein NbS00008134g0204.1 protein NbS00013761g0002.1 protein NbC23638277g0001.1 protein ; (*GB) gi|147787280|emb|CAN71414.1| (e_value=3e-37) hypothetical protein VITISV_029216 [Vitis vinifera];; (*SWP) sp|Q9C952|CPSF3_ARATH (e_value=2e-36) Cleavage and polyadenylation specificity factor subunit 3-I OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1;; (*TAIR) AT1G61010.3 (e_value=2e-37) | Symbols: CPSF73-I | cleavage and polyadenylation specificity factor 73-I | chr1:22474954-22477660 REVERSE LENGTH=693;; (*ITAG) Solyc07g049480.2.1 (e_value=3e-44) genomic_reference:SL2.40ch07 gene_region:57077978-57086643 transcript_region:SL2.40ch07:57077978..57086643+ go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B5X1A0_SALSA); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00037592g0002.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=6e-32) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00040664g0003.1 protein NbS00002609g0002.1 protein NbS00002590g0001.1 protein ; (*TAIR) AT5G37590.1 (e_value=1e-13) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:14927403-14932709 REVERSE LENGTH=551;; (*ITAG) Solyc11g011390.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4461423-4472090 transcript_region:SL2.40ch11:4461423..4472090+ go_terms:GO:0005488 functional_description:"TPR repeat Kinesin light chain Kinesin light chain (AHRD V1 *--- Q4C9Q1_CROWT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00020582g0001.1 protein NbS00017963g0001.1 protein NbS00017963g0002.1 protein NbS00015060g0102.1 protein NbC23257040g0001.1 protein ; (*GB) gi|356521768|ref|XP_003529523.1| (e_value=1e-19) PREDICTED: coatomer subunit beta-1-like [Glycine max];; (*SWP) sp|Q0JNK5|COPB2_ORYSJ (e_value=1e-19) Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1;; (*TAIR) AT4G31480.2 (e_value=2e-20) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc10g081920.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62184972-62189867 transcript_region:SL2.40ch10:62184972..62189867- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00021035g0001.1 protein NbS00057436g0003.1 protein ; (*GB) gi|255544592|ref|XP_002513357.1| (e_value=3e-29) 2,4-dienoyl-CoA reductase, putative [Ricinus communis];; (*SWP) sp|Q9LTV6|DECR2_ARATH (e_value=8e-27) Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1;; (*TAIR) AT3G12800.1 (e_value=6e-28) | Symbols: SDRB, DECR | short-chain dehydrogenase-reductase B | chr3:4063463-4064757 REVERSE LENGTH=298;; (*ITAG) Solyc07g066630.2.1 (e_value=4e-33) genomic_reference:SL2.40ch07 gene_region:65216475-65219626 transcript_region:SL2.40ch07:65216475..65219626- go_terms:GO:0008670 functional_description:"Oxidoreductase short-chain dehydrogenase/reductase (AHRD V1 **-* A9ICB4_BORPD); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008670 NbS00023304g0001.1 protein NbS00018182g0001.1 protein NbS00009427g0002.1 protein NbS00002970g0001.1 protein ; (*GB) gi|70779014|gb|AAZ08051.1| (e_value=6e-38) wax synthase [Petunia x hybrida];; (*SWP) sp|Q93ZR6|WSD1_ARATH (e_value=8e-15) O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1;; (*TAIR) AT3G49190.1 (e_value=3e-23) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231988-18234376 REVERSE LENGTH=522;; (*ITAG) Solyc10g009430.2.1 (e_value=3e-35) genomic_reference:SL2.40ch10 gene_region:3495360-3501746 transcript_region:SL2.40ch10:3495360..3501746+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- Q124V7_POLSJ); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00061533g0001.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00024089g0003.1 protein NbC23334720g0001.1 protein ; (*GB) gi|584740|sp|P37142.1|AKH_DAUCA (e_value=5e-33) RecName: Full=Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic; Short=AK-HD; Short=AK-HSDH; Includes: RecName: Full=Aspartokinase; Includes: RecName: Full=Homoserine dehydrogenase; Flags: Precursor;; (*SWP) sp|P37142|AKH_DAUCA (e_value=2e-34) Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1;; (*TAIR) AT4G19710.1 (e_value=4e-33) | Symbols: AK-HSDH II, AK-HSDH | aspartate kinase-homoserine dehydrogenase ii | chr4:10725229-10729278 FORWARD LENGTH=859;; (*ITAG) Solyc11g040390.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30687864-30698842 transcript_region:SL2.40ch11:30687864..30698842- go_terms:GO:0008652,GO:0008152,GO:0006520,GO:0050661,GO:0055114 functional_description:"Aspartokinase-homoserine dehydrogenase (AHRD V1 ***- O63067_SOYBN); contains Interpro domain(s) IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I "; GO:0008652,GO:0008152,GO:0006520,GO:0050661,GO:0055114 NbS00001288g0002.1 protein ; (*GB) gi|224101747|ref|XP_002312405.1| (e_value=4e-57) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LGG8|USPAL_ARATH (e_value=5e-15) Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2;; (*TAIR) AT1G68300.1 (e_value=3e-44) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:25598518-25599261 REVERSE LENGTH=160;; (*ITAG) Solyc01g100370.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:82186051-82188666 transcript_region:SL2.40ch01:82186051..82188666+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B6SNQ1_MAIZE); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00030409g0002.1 protein NbS00010406g0002.1 protein ; (*GB) gi|30687433|ref|NP_849455.1| (e_value=2e-42) NADH:ubiquinone oxidoreductase subunit-17.2 [Arabidopsis thaliana];; (*TAIR) AT4G26965.1 (e_value=4e-45) | Symbols: | NADH:ubiquinone oxidoreductase, 17.2kDa subunit | chr4:13539717-13542041 FORWARD LENGTH=184;; (*ITAG) Solyc07g064640.2.1 (e_value=3e-54) genomic_reference:SL2.40ch07 gene_region:63923239-63927583 transcript_region:SL2.40ch07:63923239..63927583- go_terms:GO:0016020 functional_description:"NADH ubiquinone oxidoreductase family protein (AHRD V1 **-- D7MEK6_ARALY); contains Interpro domain(s) IPR007763 NADH:ubiquinone oxidoreductase, 17.2 kD subunit "; GO:0016020 NbS00045052g0001.1 protein ; (*GB) gi|222820580|gb|ACM67640.1| (e_value=1e-59) BTB-POZ and MATH domain protein [Capsicum annuum];; (*SWP) sp|Q1EBV6|BPM5_ARATH (e_value=2e-56) BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1;; (*TAIR) AT5G21010.1 (e_value=2e-57) | Symbols: ATBPM5, BPM5 | BTB-POZ and MATH domain 5 | chr5:7136062-7138374 FORWARD LENGTH=410;; (*ITAG) Solyc01g009060.2.1 (e_value=5e-74) genomic_reference:SL2.40ch01 gene_region:3067813-3074739 transcript_region:SL2.40ch01:3067813..3074739+ go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00019457g0001.1 protein NbS00010198g0101.1 protein NbS00018131g0001.1 protein ; (*GB) gi|147854599|emb|CAN80696.1| (e_value=3e-23) hypothetical protein VITISV_018377 [Vitis vinifera]; NbS00028918g0004.1 protein NbS00026286g0004.1 protein NbS00026286g0005.1 protein NbC24689852g0001.1 protein ; (*GB) gi|255584751|ref|XP_002533094.1| (e_value=5e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G59400.2 (e_value=8e-29) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=301;; (*ITAG) Solyc06g076250.2.1 (e_value=2e-34) genomic_reference:SL2.40ch06 gene_region:43763435-43767560 transcript_region:SL2.40ch06:43763435..43767560+ functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 **-- Q9LTI9_ARATH)"; NbS00046785g0003.1 protein ; (*ITAG) Solyc05g006680.2.1 (e_value=2e-22) genomic_reference:SL2.40ch05 gene_region:1357171-1361457 transcript_region:SL2.40ch05:1357171..1361457+ go_terms:GO:0016020,GO:0005529 functional_description:"Beta-1 3-galactosyltransferase-like protein (AHRD V1 ***- D8RWA4_SELML); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020,GO:0005529 NbS00041700g0001.1 protein ; (*GB) gi|359480437|ref|XP_002263195.2| (e_value=7e-29) PREDICTED: protein misato homolog 1-like [Vitis vinifera];; (*TAIR) AT4G37190.2 (e_value=1e-30) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17507453-17509512 FORWARD LENGTH=516;; (*ITAG) Solyc01g100190.2.1 (e_value=4e-48) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00056444g0001.1 protein NbS00026086g0001.1 protein NbS00007468g0001.1 protein NbS00007468g0005.1 protein NbC24628394g0001.1 protein ; (*GB) gi|356504507|ref|XP_003521037.1| (e_value=7e-47) PREDICTED: dynamin-related protein 1E-like isoform 3 [Glycine max];; (*SWP) sp|Q9FNX5|DRP1E_ARATH (e_value=4e-42) Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1;; (*TAIR) AT3G60190.1 (e_value=3e-43) | Symbols: ADL4, ADLP2, EDR3, DRP1E, ADL1E, DL1E | DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624;; (*ITAG) Solyc01g088510.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:75045390-75049645 transcript_region:SL2.40ch01:75045390..75049645- go_terms:GO:0003924 functional_description:"Dynamin like protein (AHRD V1 ***- D3BTL7_POLPA); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00000988g0005.1 protein NbS00001267g0001.1 protein ; (*GB) gi|147862841|emb|CAN82967.1| (e_value=4e-28) hypothetical protein VITISV_021856 [Vitis vinifera];; (*TAIR) AT1G75660.1 (e_value=4e-11) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc04g081280.2.1 (e_value=3e-110) genomic_reference:SL2.40ch04 gene_region:62902246-62914223 transcript_region:SL2.40ch04:62902246..62914223+ go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 **** A5WVY7_DANRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbS00011984g0003.1 protein NbS00024107g0001.1 protein NbS00056386g0001.1 protein NbS00003621g0003.1 protein ; (*GB) gi|297738031|emb|CBI27232.3| (e_value=1e-72) unnamed protein product [Vitis vinifera];; (*SWP) sp|O49436|PP327_ARATH (e_value=1e-52) Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=2 SV=1;; (*TAIR) AT4G20090.1 (e_value=1e-53) | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10868400-10870382 REVERSE LENGTH=660;; (*ITAG) Solyc02g081860.1.1 (e_value=7e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:40221696-40223849 transcript_region:SL2.40ch02:40221696..40223849- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MRA3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00010607g0004.1 protein NbS00002400g0001.1 protein NbS00019367g0004.1 protein NbS00003141g0001.1 protein NbS00003141g0002.1 protein NbS00002723g0005.1 protein NbS00003889g0003.1 protein ; (*ITAG) Solyc04g080170.2.1 (e_value=7e-34) genomic_reference:SL2.40ch04 gene_region:62021907-62032697 transcript_region:SL2.40ch04:62021907..62032697- go_terms:GO:0004674 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BAM4_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbC23767514g0001.1 protein ; (*GB) gi|356566838|ref|XP_003551633.1| (e_value=2e-20) PREDICTED: uncharacterized protein LOC100807844 [Glycine max];; (*ITAG) Solyc01g091500.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:76885279-76893140 transcript_region:SL2.40ch01:76885279..76893140- functional_description:"Forkhead-associated domain-containing protein (AHRD V1 ***- D7LCJ5_ARALY); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00029060g0005.1 protein NbS00024553g0004.1 protein ; (*ITAG) Solyc04g051160.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00022083g0003.1 protein NbS00031151g0001.1 protein ; (*ITAG) Solyc04g054650.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52066696-52069078 transcript_region:SL2.40ch04:52066696..52069078+ go_terms:GO:0008270 functional_description:"Ring finger protein 157 (AHRD V1 *--- A2AAN9_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00046992g0001.1 protein NbS00023826g0003.1 protein NbS00014170g0003.1 protein NbS00025420g0001.1 protein NbS00023850g0002.1 protein NbS00017965g0001.1 protein NbS00004053g0002.1 protein ; (*GB) gi|298204772|emb|CBI25270.3| (e_value=3e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G34070.1 (e_value=8e-22) | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12402283-12403209 FORWARD LENGTH=308;; (*ITAG) Solyc05g050070.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:59223448-59224521 transcript_region:SL2.40ch05:59223448..59224521+ go_terms:GO:0008270 functional_description:"Polyprotein (AHRD V1 ***- Q94KV0_ARATH); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00013305g0103.1 protein NbS00025330g0001.1 protein NbS00025447g0001.1 protein NbS00037466g0004.1 protein ; (*GB) gi|195653657|gb|ACG46296.1| (e_value=5e-14) protein yippee-like [Zea mays];; (*ITAG) Solyc05g050510.2.1 (e_value=5e-13) genomic_reference:SL2.40ch05 gene_region:59792534-59793577 transcript_region:SL2.40ch05:59792534..59793577- go_terms:GO:0005515,GO:0008270 functional_description:"Yippee zinc-binding protein (AHRD V1 **** B2VX42_PYRTR); contains Interpro domain(s) IPR004910 Yippee-like protein "; GO:0005515,GO:0008270 NbS00037466g0006.1 protein NbS00006054g0001.1 protein ; (*GB) gi|25453061|sp|Q9FS87.1|IVD2_SOLTU (e_value=5e-19) RecName: Full=Isovaleryl-CoA dehydrogenase 2, mitochondrial; Short=IVD 2; Flags: Precursor;; (*SWP) sp|Q9FS87|IVD2_SOLTU (e_value=2e-20) Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1;; (*TAIR) AT3G45300.1 (e_value=8e-18) | Symbols: IVD, ATIVD, IVDH | isovaleryl-CoA-dehydrogenase | chr3:16621659-16624848 REVERSE LENGTH=409;; (*ITAG) Solyc11g069180.1.1 (e_value=6e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50892679-50899807 transcript_region:SL2.40ch11:50892679..50899807+ go_terms:GO:0055114 functional_description:"Isovaleryl-CoA dehydrogenase (AHRD V1 ***- Q0MX57_BETVU); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00001779g0003.1 protein ; (*GB) gi|225448253|ref|XP_002268888.1| (e_value=3e-59) PREDICTED: outer envelope protein 64, mitochondrial [Vitis vinifera];; (*SWP) sp|F4KCL7|OE64M_ARATH (e_value=4e-50) Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1;; (*TAIR) AT5G09420.1 (e_value=3e-51) | Symbols: ATTOC64-V, MTOM64, TOC64-V, OM64, AtmtOM64 | translocon at the outer membrane of chloroplasts 64-V | chr5:2928316-2931750 FORWARD LENGTH=603;; (*ITAG) Solyc10g047300.1.1 (e_value=6e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35957327-35976314 transcript_region:SL2.40ch10:35957327..35976314+ go_terms:GO:0005515,GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 *-*- D5DXY7_BACMQ); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0005515,GO:0004040 NbS00048898g0002.1 protein NbS00038363g0001.1 protein NbS00015728g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00020432g0003.1 protein NbS00001248g0001.1 protein NbC23659329g0001.1 protein ; (*GB) gi|239056198|emb|CAQ58636.1| (e_value=9e-46) Ethanolamine-phosphate cytidylyltransferase [Vitis vinifera];; (*SWP) sp|Q99447|PCY2_HUMAN (e_value=2e-19) Ethanolamine-phosphate cytidylyltransferase OS=Homo sapiens GN=PCYT2 PE=1 SV=1;; (*TAIR) AT2G38670.1 (e_value=3e-46) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc10g074700.1.1 (e_value=1e-50) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:57632239-57644832 transcript_region:SL2.40ch10:57632239..57644832+ go_terms:GO:0009058 functional_description:"Bifunctional protein hldE (AHRD V1 *-*- HLDE_ERWCT); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0009058 NbS00061239g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-29) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00061239g0003.1 protein NbS00061239g0004.1 protein ; (*GB) gi|224112547|ref|XP_002316225.1| (e_value=1e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g030530.2.1 (e_value=4e-25) genomic_reference:SL2.40ch06 gene_region:16057617-16063422 transcript_region:SL2.40ch06:16057617..16063422- functional_description:"Unknown Protein (AHRD V1)"; NbS00061239g0005.1 protein NbS00042092g0002.1 protein NbS00019263g0004.1 protein NbS00051539g0001.1 protein ; (*ITAG) Solyc01g094040.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:77372507-77374920 transcript_region:SL2.40ch01:77372507..77374920- go_terms:GO:0009055 functional_description:"Plastocyanin-like domain containing protein expressed (AHRD V1 **-- Q2QRP3_ORYSJ); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00000332g0101.1 protein NbS00001028g0002.1 protein NbS00012914g0001.1 protein NbS00012914g0005.1 protein NbS00015742g0001.1 protein NbS00015742g0003.1 protein NbS00043380g0001.1 protein ; (*ITAG) Solyc10g047890.1.1 (e_value=1e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00049766g0003.1 protein ; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=1e-36) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*TAIR) AT3G08943.1 (e_value=2e-37) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=7e-43) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00021467g0001.1 protein NbS00021467g0002.1 protein NbS00019728g0001.1 protein NbS00006358g0004.1 protein ; (*ITAG) Solyc04g045560.2.1 (e_value=6e-30) genomic_reference:SL2.40ch04 gene_region:33188973-33194461 transcript_region:SL2.40ch04:33188973..33194461+ go_terms:GO:0005634 functional_description:"Squamosa promoter-binding-like protein 11 (AHRD V1 *-*- B6TF72_MAIZE); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00042738g0002.1 protein NbS00021961g0002.1 protein NbS00020276g0002.1 protein ; (*GB) gi|356567605|ref|XP_003552008.1| (e_value=7e-17) PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max];; (*SWP) sp|Q8VZQ5|NAT8_ARATH (e_value=2e-17) Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1;; (*TAIR) AT1G10540.1 (e_value=1e-18) | Symbols: ATNAT8, NAT8 | nucleobase-ascorbate transporter 8 | chr1:3475024-3477756 REVERSE LENGTH=539;; (*ITAG) Solyc05g006020.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:754456-759784 transcript_region:SL2.40ch05:754456..759784+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbC23927159g0001.1 protein ; (*ITAG) Solyc01g110120.2.1 (e_value=4e-15) genomic_reference:SL2.40ch01 gene_region:88653085-88663519 transcript_region:SL2.40ch01:88653085..88663519- go_terms:GO:0046961,GO:0009678 functional_description:"V-type proton ATPase subunit a (AHRD V1 **** VPH1_NEUCR); contains Interpro domain(s) IPR002490 ATPase, V0/A0 complex, 116-kDa subunit "; GO:0046961,GO:0009678 NbC24396106g0001.1 protein ; (*GB) gi|224132114|ref|XP_002321259.1| (e_value=5e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FRK5|Y1514_ARATH (e_value=1e-55) Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana GN=At1g75140 PE=1 SV=3;; (*TAIR) AT1G75140.1 (e_value=8e-57) | Symbols: | unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28202166-28204019 REVERSE LENGTH=617;; (*ITAG) Solyc04g080180.1.1 (e_value=4e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62036685-62038604 transcript_region:SL2.40ch04:62036685..62038604- functional_description:"Uncharacterized membrane protein At1g75140 (AHRD V1 ***- Y1514_ARATH); contains Interpro domain(s) IPR011044 Quinoprotein amine dehydrogenase, beta chain-like "; NbS00014785g0001.1 protein NbS00034663g0001.1 protein NbS00018368g0005.1 protein NbS00003867g0002.1 protein ; (*ITAG) Solyc02g076860.2.1 (e_value=2e-15) genomic_reference:SL2.40ch02 gene_region:36558814-36560643 transcript_region:SL2.40ch02:36558814..36560643- go_terms:GO:0005615 functional_description:"Pollen allergen Phl p 11 (AHRD V1 ***- B6TNI5_MAIZE); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0005615 NbS00020056g0103.1 protein NbC24306238g0001.1 protein ; (*GB) gi|147860572|emb|CAN79718.1| (e_value=6e-60) hypothetical protein VITISV_012741 [Vitis vinifera];; (*SWP) sp|Q9M2A1|PP263_ARATH (e_value=5e-54) Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana GN=At3g42630 PE=2 SV=2;; (*TAIR) AT3G42630.1 (e_value=4e-55) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:14722314-14723635 FORWARD LENGTH=415;; (*ITAG) Solyc05g047540.2.1 (e_value=1e-81) genomic_reference:SL2.40ch05 gene_region:58163573-58166944 transcript_region:SL2.40ch05:58163573..58166944+ functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- Q287V2_9BRAS); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041261g0001.1 protein ; (*GB) gi|587562|emb|CAA56520.1| (e_value=6e-24) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|P29677|MPPA_SOLTU (e_value=8e-25) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.2 (e_value=7e-19) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323929-19326771 REVERSE LENGTH=451;; (*ITAG) Solyc12g008630.1.1 (e_value=1e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00031056g0001.1 protein NbS00032094g0001.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-34) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbC23674094g0001.1 protein ; (*GB) gi|585973|sp|P37829.1|SCRK_SOLTU (e_value=1e-32) RecName: Full=Fructokinase;; (*SWP) sp|P37829|SCRK_SOLTU (e_value=3e-34) Fructokinase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT2G31390.1 (e_value=9e-33) | Symbols: | pfkB-like carbohydrate kinase family protein | chr2:13383635-13386116 REVERSE LENGTH=325;; (*ITAG) Solyc06g073190.2.1 (e_value=3e-35) genomic_reference:SL2.40ch06 gene_region:41483219-41485991 transcript_region:SL2.40ch06:41483219..41485991- go_terms:GO:0008865,GO:0008959 functional_description:"Fructokinase-like (AHRD V1 **-* Q307Z3_SOLTU); contains Interpro domain(s) IPR002173 Carbohydrate/puine kinase, PfkB, conserved site "; GO:0008865,GO:0008959 NbS00004015g0001.1 protein NbS00047658g0001.1 protein ; (*GB) gi|225464799|ref|XP_002269136.1| (e_value=5e-66) PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like [Vitis vinifera];; (*SWP) sp|Q8GZA6|PP113_ARATH (e_value=1e-29) Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1;; (*TAIR) AT1G71210.1 (e_value=1e-30) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26838850-26841489 REVERSE LENGTH=879;; (*ITAG) Solyc07g042030.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52221117-52223807 transcript_region:SL2.40ch07:52221117..52223807- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC24763982g0001.1 protein NbS00013166g0001.1 protein NbS00015416g0001.1 protein NbS00022602g0003.1 protein NbS00035276g0001.1 protein NbS00035001g0002.1 protein NbS00035001g0003.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-57) RNase H family protein [Solanum demissum];; (*ITAG) Solyc10g047890.1.1 (e_value=2e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00050823g0003.1 protein ; (*GB) gi|225461289|ref|XP_002281612.1| (e_value=7e-47) PREDICTED: uncharacterized protein LOC100258913 [Vitis vinifera];; (*TAIR) AT5G45540.1 (e_value=1e-44) | Symbols: | Protein of unknown function (DUF594) | chr5:18458294-18460705 REVERSE LENGTH=803;; (*ITAG) Solyc12g094650.1.1 (e_value=3e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00059138g0001.1 protein ; (*GB) gi|350538313|ref|NP_001233825.1| (e_value=7e-21) CONSTANS interacting protein 3 [Solanum lycopersicum];; (*SWP) sp|O04287|FKB12_VICFA (e_value=6e-20) Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1;; (*TAIR) AT5G64350.1 (e_value=2e-19) | Symbols: FKBP12, ATFKBP12 | FK506-binding protein 12 | chr5:25734810-25735990 REVERSE LENGTH=112;; (*ITAG) Solyc01g105710.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:85539000-85541482 transcript_region:SL2.40ch01:85539000..85541482- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 **-- A6RSK7_BOTFB); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00022460g0001.1 protein NbS00016942g0004.1 protein ; (*ITAG) Solyc12g087840.1.1 (e_value=8e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61787827-61788774 transcript_region:SL2.40ch12:61787827..61788774+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbC25197443g0001.1 protein ; (*GB) gi|224138292|ref|XP_002326566.1| (e_value=4e-71) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q39214|RPM1_ARATH (e_value=9e-50) Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1;; (*TAIR) AT3G07040.1 (e_value=7e-51) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc11g010160.1.1 (e_value=5e-175) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3254831-3257554 transcript_region:SL2.40ch11:3254831..3257554+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00000229g0006.1 protein NbC24295431g0001.1 protein ; (*GB) gi|110676572|gb|ABG85154.1| (e_value=6e-56) RhoGAP1 [Nicotiana tabacum];; (*TAIR) AT5G22400.1 (e_value=1e-18) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466;; (*ITAG) Solyc11g068520.1.1 (e_value=4e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50302920-50308182 transcript_region:SL2.40ch11:50302920..50308182+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00047306g0001.1 protein NbS00047306g0002.1 protein NbS00057276g0002.1 protein ; (*GB) gi|359488803|ref|XP_002272525.2| (e_value=0.0) PREDICTED: putative pentatricopeptide repeat-containing protein At5g09950 [Vitis vinifera];; (*SWP) sp|Q9SS97|PP205_ARATH (e_value=3e-169) Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2;; (*TAIR) AT3G01580.1 (e_value=2e-170) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:223529-225511 REVERSE LENGTH=660;; (*ITAG) Solyc02g093380.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:48842100-48844049 transcript_region:SL2.40ch02:48842100..48844049- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJP3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbC24402220g0001.1 protein ; (*SWP) sp|B7FKW7|CYNS_MEDTR (e_value=2e-16) Cyanate hydratase OS=Medicago truncatula GN=CYN PE=2 SV=1;; (*ITAG) Solyc09g090430.2.1 (e_value=2e-23) genomic_reference:SL2.40ch09 gene_region:65298327-65302769 transcript_region:SL2.40ch09:65298327..65302769- go_terms:GO:0008152,GO:0003677,GO:0009439 functional_description:"Cyanate hydratase (AHRD V1 ***- B6TTW1_MAIZE); contains Interpro domain(s) IPR008076 Cyanase "; GO:0008152,GO:0003677,GO:0009439 NbS00000617g0003.1 protein NbS00057214g0001.1 protein ; (*GB) gi|225456898|ref|XP_002280677.1| (e_value=2e-52) PREDICTED: leucine-rich repeat protein SHOC-2-like [Vitis vinifera];; (*TAIR) AT3G11330.1 (e_value=2e-40) | Symbols: PIRL9 | plant intracellular ras group-related LRR 9 | chr3:3552330-3554695 REVERSE LENGTH=499;; (*ITAG) Solyc03g112270.2.1 (e_value=1e-84) genomic_reference:SL2.40ch03 gene_region:56776658-56780829 transcript_region:SL2.40ch03:56776658..56780829- go_terms:GO:0008022 functional_description:"Lrr, resistance protein fragment"; GO:0008022 NbS00005344g0004.1 protein NbS00041671g0001.1 protein NbS00039201g0001.1 protein ; (*ITAG) Solyc08g068010.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbC24993801g0001.1 protein ; (*GB) gi|297737423|emb|CBI26624.3| (e_value=4e-57) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q571H0|NPA1P_MOUSE (e_value=6e-14) Nucleolar pre-ribosomal-associated protein 1 OS=Mus musculus GN=Urb1 PE=2 SV=2;; (*TAIR) AT4G27010.1 (e_value=3e-46) | Symbols: | CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13558943-13568296 FORWARD LENGTH=2374;; (*ITAG) Solyc02g065500.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:31242390-31258151 transcript_region:SL2.40ch02:31242390..31258151- go_terms:GO:0016021 functional_description:"Nucleolar pre-ribosomal-associated protein 1 (AHRD V1 *--- NPA1P_HUMAN)"; GO:0016021 NbS00032249g0003.1 protein NbC23330545g0001.1 protein ; (*GB) gi|302399067|gb|ADL36828.1| (e_value=2e-31) TCP domain class transcription factor [Malus x domestica];; (*SWP) sp|Q76NU3|TCPZ_DICDI (e_value=2e-23) T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1;; (*TAIR) AT3G02530.1 (e_value=3e-33) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:528806-532457 REVERSE LENGTH=535;; (*ITAG) Solyc02g085790.2.1 (e_value=2e-35) genomic_reference:SL2.40ch02 gene_region:43142674-43149983 transcript_region:SL2.40ch02:43142674..43149983+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit zeta (AHRD V1 ***- B6U118_MAIZE); contains Interpro domain(s) IPR012722 T-complex protein 1, zeta subunit "; GO:0051082 NbS00007436g0001.1 protein NbS00007436g0008.1 protein ; (*GB) gi|255581273|ref|XP_002531448.1| (e_value=3e-53) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G80530.1 (e_value=8e-45) | Symbols: | Major facilitator superfamily protein | chr1:30278224-30280247 REVERSE LENGTH=561;; (*ITAG) Solyc03g117300.2.1 (e_value=1e-67) genomic_reference:SL2.40ch03 gene_region:60527438-60531300 transcript_region:SL2.40ch03:60527438..60531300+ functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H6R3_PONTR); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00016479g0002.1 protein ; (*GB) gi|255542878|ref|XP_002512502.1| (e_value=2e-164) Pyrophosphate-energized vacuolar membrane proton pump, putative [Ricinus communis];; (*SWP) sp|P31414|AVP1_ARATH (e_value=2e-153) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.1 (e_value=2e-154) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc01g100390.2.1 (e_value=7e-174) genomic_reference:SL2.40ch01 gene_region:82195092-82200189 transcript_region:SL2.40ch01:82195092..82200189- go_terms:GO:0016020 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0016020 NbS00037455g0101.1 protein NbS00058495g0001.1 protein NbS00021051g0002.1 protein ; (*GB) gi|142942395|gb|ABO92970.1| (e_value=6e-14) protein of unknown function [Solanum tuberosum]; NbS00050746g0002.1 protein NbS00050746g0003.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=1e-20) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*TAIR) AT1G01090.1 (e_value=5e-22) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009410.1.1 (e_value=2e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2687666-2690826 transcript_region:SL2.40ch12:2687666..2690826+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 **** Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0004739 NbS00038466g0001.1 protein NbC23294119g0001.1 protein ; (*GB) gi|149925331|ref|ZP_01913595.1| (e_value=5e-37) glucose-6-phosphate 1-dehydrogenase [Limnobacter sp. MED105];; (*SWP) sp|P21907|G6PD_ZYMMO (e_value=3e-17) Glucose-6-phosphate 1-dehydrogenase OS=Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) GN=zwf PE=3 SV=1;; (*TAIR) AT1G24280.1 (e_value=6e-14) | Symbols: G6PD3 | glucose-6-phosphate dehydrogenase 3 | chr1:8609495-8612383 FORWARD LENGTH=599;; (*ITAG) Solyc05g015950.2.1 (e_value=7e-14) genomic_reference:SL2.40ch05 gene_region:13085212-13089624 transcript_region:SL2.40ch05:13085212..13089624- go_terms:GO:0004345 functional_description:"Glucose-6-phosphate 1-dehydrogenase (AHRD V1 **** Q8H9C8_SOLTU); contains Interpro domain(s) IPR001282 Glucose-6-phosphate dehydrogenase "; GO:0004345 NbS00039774g0001.1 protein ; (*GB) gi|15224190|ref|NP_179445.1| (e_value=2e-31) homeobox-leucine zipper protein ATHB-21 [Arabidopsis thaliana];; (*SWP) sp|Q9ZU70|ATB21_ARATH (e_value=5e-33) Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1;; (*TAIR) AT2G18550.1 (e_value=4e-34) | Symbols: HB-2, ATHB21, HB21 | homeobox protein 21 | chr2:8049663-8051213 REVERSE LENGTH=220;; (*ITAG) Solyc02g085630.2.1 (e_value=3e-37) genomic_reference:SL2.40ch02 gene_region:43040926-43042901 transcript_region:SL2.40ch02:43040926..43042901+ go_terms:GO:0003677,GO:0004999 functional_description:"Homeobox-leucine zipper-like protein (AHRD V1 *-*- Q3HRT1_PICGL); contains Interpro domain(s) IPR001356 Homeobox "; GO:0003677,GO:0004999 NbS00003391g0001.1 protein NbS00031638g0002.1 protein NbC23747271g0001.1 protein ; (*GB) gi|224108563|ref|XP_002314893.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GVE8|CAPP4_ARATH (e_value=1e-21) Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1;; (*TAIR) AT1G68750.1 (e_value=1e-22) | Symbols: ATPPC4, PPC4 | phosphoenolpyruvate carboxylase 4 | chr1:25822942-25828104 REVERSE LENGTH=1032;; (*ITAG) Solyc04g006970.2.1 (e_value=6e-28) genomic_reference:SL2.40ch04 gene_region:663594-674845 transcript_region:SL2.40ch04:663594..674845- go_terms:GO:0005515,GO:0008964 functional_description:"Phosphoenolpyruvate carboxylase (AHRD V1 **** A6YM33_RICCO); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core "; GO:0005515,GO:0008964 NbS00000547g0002.1 protein NbS00000547g0003.1 protein ; (*GB) gi|121702361|ref|XP_001269445.1| (e_value=5e-14) RNase H domain protein [Aspergillus clavatus NRRL 1]; NbS00040456g0001.1 protein NbS00011818g0001.1 protein NbS00045686g0001.1 protein ; (*GB) gi|224054456|ref|XP_002298269.1| (e_value=6e-21) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g068970.1.1 (e_value=4e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50629856-50633071 transcript_region:SL2.40ch11:50629856..50633071+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbC24379349g0001.1 protein ; (*GB) gi|225448823|ref|XP_002282354.1| (e_value=1e-71) PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera];; (*SWP) sp|Q15393|SF3B3_HUMAN (e_value=8e-33) Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4;; (*TAIR) AT3G55200.1 (e_value=2e-70) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214;; (*ITAG) Solyc04g010260.2.1 (e_value=3e-73) genomic_reference:SL2.40ch04 gene_region:3583577-3588628 transcript_region:SL2.40ch04:3583577..3588628- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor RSE1 (AHRD V1 ***- A8N7S1_COPC7); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515 NbS00031825g0001.1 protein NbS00010770g0002.1 protein ; (*GB) gi|225432792|ref|XP_002283454.1| (e_value=2e-34) PREDICTED: DPH4 homolog isoform 3 [Vitis vinifera];; (*TAIR) AT4G10130.1 (e_value=2e-23) | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr4:6320959-6321483 REVERSE LENGTH=174;; (*ITAG) Solyc12g088890.1.1 (e_value=3e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62529087-62533501 transcript_region:SL2.40ch12:62529087..62533501+ go_terms:GO:0031072 functional_description:"DnaJ chaperone (AHRD V1 *-*- C1EBL7_9CHLO); contains Interpro domain(s) IPR015609 Molecular chaperone, heat shock protein, Hsp40, DnaJ "; GO:0031072 NbS00009212g0001.1 protein ; (*GB) gi|356540870|ref|XP_003538907.1| (e_value=9e-82) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max];; (*SWP) sp|Q9P2J5|SYLC_HUMAN (e_value=2e-48) Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=LARS PE=1 SV=2;; (*TAIR) AT1G09620.1 (e_value=9e-74) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=7e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00020364g0001.1 protein NbS00020364g0002.1 protein NbS00017497g0001.1 protein NbS00037093g0001.1 protein NbS00037519g0005.1 protein ; (*GB) gi|147808123|emb|CAN64169.1| (e_value=3e-16) hypothetical protein VITISV_015921 [Vitis vinifera]; NbC24277989g0001.1 protein ; (*GB) gi|285014345|gb|ADC33123.1| (e_value=2e-41) tyrosine aminotransferase [Papaver somniferum];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=2e-40) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=2e-41) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc07g053710.2.1 (e_value=9e-55) genomic_reference:SL2.40ch07 gene_region:59459841-59463049 transcript_region:SL2.40ch07:59459841..59463049- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** D3K4J1_PAPSO); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbC23674820g0001.1 protein ; (*ITAG) Solyc03g123820.1.1 (e_value=7e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbC25548993g0001.1 protein ; (*GB) gi|4589880|dbj|BAA76903.1| (e_value=7e-54) homeobox 9 [Nicotiana tabacum];; (*SWP) sp|Q75LX9|KNOS5_ORYSJ (e_value=1e-14) Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp. japonica GN=Os03g0673500 PE=3 SV=1;; (*TAIR) AT1G23380.1 (e_value=9e-16) | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like homeobox gene 6 | chr1:8297499-8302492 REVERSE LENGTH=327;; (*ITAG) Solyc03g112740.1.1 (e_value=6e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57131920-57134069 transcript_region:SL2.40ch03:57131920..57134069- go_terms:GO:0005634 functional_description:"Homeobox transcription factor KN2 (Fragment) (AHRD V1 *-*- Q0QV71_PICAB); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634 NbC23489043g0001.1 protein ; (*GB) gi|21595439|gb|AAM66101.1| (e_value=1e-14) chaperonin subunit, putative [Arabidopsis thaliana];; (*TAIR) AT3G18190.1 (e_value=2e-17) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:6232226-6233836 FORWARD LENGTH=536;; (*ITAG) Solyc03g118910.1.1 (e_value=2e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61737005-61738624 transcript_region:SL2.40ch03:61737005..61738624- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit delta (AHRD V1 ***- B9S339_RICCO); contains Interpro domain(s) IPR012717 T-complex protein 1, delta subunit "; GO:0044267,GO:0006457 NbS00005989g0001.1 protein NbS00005989g0002.1 protein NbC23534727g0001.1 protein ; (*GB) gi|359475304|ref|XP_003631645.1| (e_value=2e-30) PREDICTED: coatomer subunit gamma-2-like [Vitis vinifera];; (*SWP) sp|Q8H852|COPG1_ORYSJ (e_value=1e-30) Coatomer subunit gamma-1 OS=Oryza sativa subsp. japonica GN=Os03g0227000 PE=2 SV=2;; (*TAIR) AT4G34450.1 (e_value=5e-30) | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886;; (*ITAG) Solyc01g109540.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbS00001636g0001.1 protein NbS00017125g0002.1 protein NbS00017125g0003.1 protein ; (*GB) gi|147769456|emb|CAN68105.1| (e_value=4e-26) hypothetical protein VITISV_002570 [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=7e-19) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=7e-19) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc12g088090.1.1 (e_value=8e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:62014329-62019387 transcript_region:SL2.40ch12:62014329..62019387+ go_terms:GO:0005634 functional_description:"MADS-box transcription factor-like protein (AHRD V1 *-*- Q9M2M4_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00015061g0002.1 protein NbS00018632g0001.1 protein NbS00017213g0002.1 protein NbS00049346g0001.1 protein ; (*GB) gi|171854665|dbj|BAG16522.1| (e_value=5e-37) putative MATE family transporter [Capsicum chinense];; (*TAIR) AT3G03620.1 (e_value=2e-22) | Symbols: | MATE efflux family protein | chr3:873904-876252 REVERSE LENGTH=500;; (*ITAG) Solyc10g081260.1.1 (e_value=4e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:61712959-61715748 transcript_region:SL2.40ch10:61712959..61715748+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00037022g0001.1 protein ; (*GB) gi|225426078|ref|XP_002272080.1| (e_value=9e-55) PREDICTED: cation/H(+) antiporter 18 [Vitis vinifera];; (*SWP) sp|Q9FFR9|CHX18_ARATH (e_value=2e-39) Cation/H(+) antiporter 18 OS=Arabidopsis thaliana GN=CHX18 PE=2 SV=1;; (*TAIR) AT5G41610.2 (e_value=1e-40) | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 | chr5:16638554-16640859 REVERSE LENGTH=742;; (*ITAG) Solyc08g081810.2.1 (e_value=3e-71) genomic_reference:SL2.40ch08 gene_region:61916642-61920862 transcript_region:SL2.40ch08:61916642..61920862- go_terms:GO:0015386 functional_description:"Cation/H(+) antiporter 18 (AHRD V1 **** CHX18_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015386 NbS00034171g0001.1 protein ; (*GB) gi|350536253|ref|NP_001233981.1| (e_value=7e-24) vacuolar protein sorting-associated protein 41 homolog [Solanum lycopersicum];; (*SWP) sp|P93231|VPS41_SOLLC (e_value=2e-25) Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum GN=VPS41 PE=2 SV=1;; (*TAIR) AT1G08190.1 (e_value=7e-22) | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980;; (*ITAG) Solyc06g074740.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:42668546-42679343 transcript_region:SL2.40ch06:42668546..42679343- go_terms:GO:0008017 functional_description:"Vacuolar protein sorting-associated protein 41 homolog (AHRD V1 ***- B5X3G5_SALSA); contains Interpro domain(s) IPR016902 Vacuolar protein sorting-associated protein 41 IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR017986 WD40 repeat, region "; GO:0008017 NbS00022345g0001.1 protein NbS00052934g0001.1 protein NbS00027011g0001.1 protein ; (*GB) gi|356524533|ref|XP_003530883.1| (e_value=3e-42) PREDICTED: protein VAC14 homolog [Glycine max];; (*SWP) sp|Q68F38|VAC14_XENLA (e_value=1e-17) Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=3e-37) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc04g008010.2.1 (e_value=7e-49) genomic_reference:SL2.40ch04 gene_region:1656495-1673137 transcript_region:SL2.40ch04:1656495..1673137- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00009733g0004.1 protein ; (*GB) gi|359482394|ref|XP_003632768.1| (e_value=5e-17) PREDICTED: uncharacterized protein LOC100853579 [Vitis vinifera];; (*ITAG) Solyc03g117470.2.1 (e_value=3e-37) genomic_reference:SL2.40ch03 gene_region:60668427-60673467 transcript_region:SL2.40ch03:60668427..60673467- go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 *-*- B6U4N5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00031070g0003.1 protein NbS00005701g0002.1 protein ; (*GB) gi|225427401|ref|XP_002263738.1| (e_value=2e-77) PREDICTED: DNA replication licensing factor MCM9-like [Vitis vinifera];; (*SWP) sp|Q6NRM6|MCM9_XENLA (e_value=2e-52) DNA replication licensing factor MCM9 OS=Xenopus laevis GN=mcm9 PE=2 SV=1;; (*TAIR) AT2G14050.1 (e_value=6e-78) | Symbols: MCM9 | minichromosome maintenance 9 | chr2:5909240-5913817 FORWARD LENGTH=646;; (*ITAG) Solyc01g105520.2.1 (e_value=3e-85) genomic_reference:SL2.40ch01 gene_region:85428610-85440515 transcript_region:SL2.40ch01:85428610..85440515+ go_terms:GO:0043140 functional_description:"DNA replication licensing factor (AHRD V1 **** Q8JGR5_DANRE); contains Interpro domain(s) IPR001208 DNA-dependent ATPase MCM "; GO:0043140 NbS00005701g0004.1 protein NbS00025082g0001.1 protein NbC25843673g0001.1 protein ; (*GB) gi|115435744|ref|NP_001042630.1| (e_value=3e-16) Os01g0257100 [Oryza sativa Japonica Group];; (*TAIR) AT2G33775.1 (e_value=2e-16) | Symbols: RALFL19 | ralf-like 19 | chr2:14288546-14288878 FORWARD LENGTH=110;; (*ITAG) Solyc12g005460.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:272388-272780 transcript_region:SL2.40ch12:272388..272780+ functional_description:"Rapid alkalinization factor 1 (AHRD V1 *--- Q84UC9_9ROSI); contains Interpro domain(s) IPR008801 Rapid ALkalinization Factor "; NbS00032623g0003.1 protein NbS00034532g0002.1 protein ; (*ITAG) Solyc01g102500.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:83050648-83054617 transcript_region:SL2.40ch01:83050648..83054617- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 *-*- Q9FJZ1_ARATH)"; NbS00034532g0004.1 protein ; (*GB) gi|147853568|emb|CAN82350.1| (e_value=9e-34) hypothetical protein VITISV_019435 [Vitis vinifera];; (*TAIR) AT1G10310.1 (e_value=2e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:3381733-3383874 REVERSE LENGTH=242;; (*ITAG) Solyc01g103100.2.1 (e_value=5e-54) genomic_reference:SL2.40ch01 gene_region:83528327-83534064 transcript_region:SL2.40ch01:83528327..83534064+ go_terms:GO:0042803 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A6C8Y5_9PLAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0042803 NbS00000833g0003.1 protein NbS00029259g0001.1 protein NbS00017075g0001.1 protein NbS00019774g0003.1 protein NbS00018384g0003.1 protein NbS00020464g0006.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00054744g0001.1 protein ; (*GB) gi|169977330|emb|CAQ18912.1| (e_value=2e-51) domains rearranged methyltransferase [Nicotiana sylvestris];; (*ITAG) Solyc04g005250.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:185839-189158 transcript_region:SL2.40ch04:185839..189158- go_terms:GO:0003886,GO:0008170 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886,GO:0008170 NbS00018945g0001.1 protein ; (*GB) gi|255539481|ref|XP_002510805.1| (e_value=3e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g025900.2.1 (e_value=9e-72) genomic_reference:SL2.40ch03 gene_region:7694511-7700542 transcript_region:SL2.40ch03:7694511..7700542- go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-*- A8NTE4_COPC7); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00003150g0002.1 protein NbS00000424g0001.1 protein NbC23951420g0001.1 protein ; (*GB) gi|224081585|ref|XP_002306460.1| (e_value=2e-13) predicted protein [Populus trichocarpa];; (*TAIR) AT2G15790.1 (e_value=2e-14) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361;; (*ITAG) Solyc02g090480.2.1 (e_value=6e-22) genomic_reference:SL2.40ch02 gene_region:46588712-46594323 transcript_region:SL2.40ch02:46588712..46594323+ go_terms:GO:0003755 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 **** PPID_RAT); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0003755 NbS00022532g0001.1 protein NbS00003837g0001.1 protein ; (*GB) gi|255569841|ref|XP_002525884.1| (e_value=2e-74) Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q8H184|PT106_ARATH (e_value=6e-68) Probable sugar phosphate/phosphate translocator At1g06470 OS=Arabidopsis thaliana GN=At1g06470 PE=2 SV=1;; (*TAIR) AT1G06470.2 (e_value=5e-69) | Symbols: | Nucleotide/sugar transporter family protein | chr1:1970726-1973540 FORWARD LENGTH=414;; (*ITAG) Solyc12g010990.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:3849994-3854459 transcript_region:SL2.40ch12:3849994..3854459- go_terms:GO:0022857 functional_description:"Solute carrier family 35 member C2 (AHRD V1 **-- C9SII9_VERA1); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0022857 NbS00054031g0001.1 protein NbS00023097g0001.1 protein ; (*GB) gi|302143822|emb|CBI22683.3| (e_value=9e-25) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5ZK35|MET14_CHICK (e_value=5e-15) Methyltransferase-like protein 14 OS=Gallus gallus GN=METTL14 PE=2 SV=1;; (*TAIR) AT4G09980.1 (e_value=2e-25) | Symbols: EMB1691 | Methyltransferase MT-A70 family protein | chr4:6247978-6252030 REVERSE LENGTH=963;; (*ITAG) Solyc05g056210.2.1 (e_value=3e-27) genomic_reference:SL2.40ch05 gene_region:64715534-64721779 transcript_region:SL2.40ch05:64715534..64721779- go_terms:GO:0008757 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0008757 NbS00016054g0002.1 protein NbS00001539g0001.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=4e-40) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00001539g0102.1 protein NbS00020385g0002.1 protein ; (*GB) gi|255552341|ref|XP_002517215.1| (e_value=1e-38) Mavicyanin, putative [Ricinus communis];; (*SWP) sp|P80728|MAVI_CUCPE (e_value=7e-29) Mavicyanin OS=Cucurbita pepo PE=1 SV=1;; (*TAIR) AT5G26330.1 (e_value=1e-37) | Symbols: | Cupredoxin superfamily protein | chr5:9241614-9242635 REVERSE LENGTH=187;; (*ITAG) Solyc09g065260.1.1 (e_value=4e-54) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:58916089-58917302 transcript_region:SL2.40ch09:58916089..58917302- go_terms:GO:0005515 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbC24996353g0001.1 protein ; (*ITAG) Solyc08g007790.2.1 (e_value=4e-15) genomic_reference:SL2.40ch08 gene_region:2294082-2299193 transcript_region:SL2.40ch08:2294082..2299193- go_terms:GO:0004421 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 **** A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal IPR000590 Hydroxymethylglutaryl-coenzyme A synthase, active site "; GO:0004421 NbC23871945g0001.1 protein ; (*GB) gi|75156737|sp|Q8LLE5.1|FPP_SOLLC (e_value=2e-27) RecName: Full=Filament-like plant protein; Short=LeFPP;; (*SWP) sp|Q8LLE5|FPP_SOLLC (e_value=5e-29) Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1;; (*TAIR) AT1G77580.2 (e_value=2e-24) | Symbols: | Plant protein of unknown function (DUF869) | chr1:29144191-29146793 REVERSE LENGTH=779;; (*ITAG) Solyc06g060320.2.1 (e_value=7e-33) genomic_reference:SL2.40ch06 gene_region:34680331-34684417 transcript_region:SL2.40ch06:34680331..34684417- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 ***- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00003963g0102.1 protein NbS00041515g0002.1 protein NbS00020556g0004.1 protein NbS00020556g0006.1 protein NbS00010524g0001.1 protein ; (*GB) gi|793854|emb|CAA57846.1| (e_value=5e-26) legumin precur [Magnolia salicifolia];; (*SWP) sp|P83004|13SB_FAGES (e_value=5e-26) 13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1;; (*TAIR) AT5G44120.3 (e_value=1e-14) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17758246 REVERSE LENGTH=472;; (*ITAG) Solyc03g005580.2.1 (e_value=8e-38) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00015224g0004.1 protein NbS00021649g0001.1 protein NbS00009629g0003.1 protein NbS00007729g0002.1 protein NbS00027498g0002.1 protein NbS00043072g0001.1 protein NbS00001800g0002.1 protein NbS00006227g0002.1 protein NbS00009741g0001.1 protein NbC24708026g0001.1 protein ; (*GB) gi|118482855|gb|ABK93342.1| (e_value=2e-117) unknown [Populus trichocarpa];; (*SWP) sp|Q6P502|TCPG_RAT (e_value=1e-88) T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1;; (*TAIR) AT5G26360.1 (e_value=1e-114) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=2e-121) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00017830g0001.1 protein NbS00043230g0001.1 protein NbS00030853g0001.1 protein NbS00059645g0001.1 protein NbC24733189g0001.1 protein ; (*GB) gi|147856912|emb|CAN80761.1| (e_value=1e-46) hypothetical protein VITISV_014604 [Vitis vinifera];; (*TAIR) AT5G48390.1 (e_value=1e-39) | Symbols: ATZIP4 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:19612078-19615363 FORWARD LENGTH=936;; (*ITAG) Solyc09g042760.1.1 (e_value=5e-63) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:30101647-30105131 transcript_region:SL2.40ch09:30101647..30105131+ functional_description:"ZIP4/SPO22 (AHRD V1 **-- A5Y6I6_ARATH); contains Interpro domain(s) IPR013940 Meiosis specific protein SPO22 "; NbS00054919g0001.1 protein ; (*GB) gi|225437547|ref|XP_002270319.1| (e_value=5e-16) PREDICTED: histidine kinase CKI1-like [Vitis vinifera];; (*ITAG) Solyc12g099720.1.1 (e_value=6e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00001436g0001.1 protein NbS00059360g0001.1 protein ; (*GB) gi|255555311|ref|XP_002518692.1| (e_value=2e-39) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G35220.1 (e_value=3e-37) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc01g107700.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:86915524-86922302 transcript_region:SL2.40ch01:86915524..86922302+ go_terms:GO:0004061 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061 NbS00004373g0001.1 protein NbS00021413g0001.1 protein NbS00021413g0002.1 protein NbS00005707g0003.1 protein ; (*GB) gi|237687577|gb|ACR14818.1| (e_value=4e-36) phosphatidylinositol synthase [Solanum tuberosum];; (*SWP) sp|Q8LBA6|PIS1_ARATH (e_value=1e-28) CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PIS1 PE=1 SV=2;; (*TAIR) AT1G68000.1 (e_value=8e-30) | Symbols: ATPIS1, ATPIS, PIS1 | phosphatidylinositol synthase 1 | chr1:25491346-25492930 FORWARD LENGTH=227;; (*ITAG) Solyc08g005990.2.1 (e_value=2e-39) genomic_reference:SL2.40ch08 gene_region:755421-760761 transcript_region:SL2.40ch08:755421..760761- go_terms:GO:0003881 functional_description:"CDP-diacylglycerol--inositol 3-phosphatidyltransferase (Phosphatidylinositol synthase) (AHRD V1 **** Q0IIY3_XENTR); contains Interpro domain(s) IPR014387 CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote "; GO:0003881 NbS00060145g0001.1 protein ; (*GB) gi|356548565|ref|XP_003542671.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100784254 [Glycine max];; (*TAIR) AT5G20190.1 (e_value=2e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:6814093-6815171 FORWARD LENGTH=290;; (*ITAG) Solyc07g008210.2.1 (e_value=6e-41) genomic_reference:SL2.40ch07 gene_region:2947746-2951040 transcript_region:SL2.40ch07:2947746..2951040- go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *-*- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00036880g0002.1 protein ; (*GB) gi|133711808|gb|ABO36626.1| (e_value=2e-36) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*SWP) sp|Q84K00|NAC78_ARATH (e_value=7e-18) NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2;; (*TAIR) AT5G04410.1 (e_value=5e-19) | Symbols: NAC2, anac078 | NAC domain containing protein 2 | chr5:1243980-1246416 FORWARD LENGTH=567;; (*ITAG) Solyc10g079220.2.1 (e_value=4e-39) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00031391g0004.1 protein NbC23136403g0001.1 protein ; (*GB) gi|357467681|ref|XP_003604125.1| (e_value=2e-29) Serine/threonine protein kinase [Medicago truncatula];; (*TAIR) AT1G79640.2 (e_value=7e-30) | Symbols: | Protein kinase superfamily protein | chr1:29966821-29971090 REVERSE LENGTH=680;; (*ITAG) Solyc03g117790.1.1 (e_value=1e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60866655-60873589 transcript_region:SL2.40ch03:60866655..60873589- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012455g0001.1 protein ; (*GB) gi|297734955|emb|CBI17189.3| (e_value=2e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q54IP0|DNJC7_DICDI (e_value=2e-12) DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1;; (*TAIR) AT5G12430.1 (e_value=1e-57) | Symbols: TPR16 | Heat shock protein DnaJ with tetratricopeptide repeat | chr5:4028475-4034086 REVERSE LENGTH=1165;; (*ITAG) Solyc11g065260.1.1 (e_value=1e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47715490-47734377 transcript_region:SL2.40ch11:47715490..47734377- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00034995g0101.1 protein NbC24041694g0001.1 protein ; (*GB) gi|242036895|ref|XP_002465842.1| (e_value=4e-63) hypothetical protein SORBIDRAFT_01g046840 [Sorghum bicolor];; (*SWP) sp|Q9SCN8|CD48D_ARATH (e_value=6e-64) Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1;; (*TAIR) AT3G53230.1 (e_value=5e-65) | Symbols: | ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815;; (*ITAG) Solyc03g112590.2.1 (e_value=2e-66) genomic_reference:SL2.40ch03 gene_region:57029718-57040222 transcript_region:SL2.40ch03:57029718..57040222- go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0004176 NbS00035439g0001.1 protein NbS00035439g0002.1 protein ; (*GB) gi|323370547|gb|ADX43928.1| (e_value=2e-39) ADR1 [Solanum tuberosum];; (*SWP) sp|Q9LZ25|DRL30_ARATH (e_value=5e-20) Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1;; (*TAIR) AT5G04720.1 (e_value=4e-21) | Symbols: ADR1-L2 | ADR1-like 2 | chr5:1360748-1363665 FORWARD LENGTH=811;; (*ITAG) Solyc04g079420.2.1 (e_value=5e-42) genomic_reference:SL2.40ch04 gene_region:61521424-61524959 transcript_region:SL2.40ch04:61521424..61524959+ go_terms:GO:0016301 functional_description:"Nbs-lrr, resistance protein"; GO:0016301 NbS00016688g0001.1 protein NbC23737757g0001.1 protein ; (*GB) gi|356532742|ref|XP_003534930.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100803232 [Glycine max];; (*TAIR) AT4G29790.1 (e_value=1e-10) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink). | chr4:14584228-14590123 FORWARD LENGTH=1211;; (*ITAG) Solyc07g040980.2.1 (e_value=5e-39) genomic_reference:SL2.40ch07 gene_region:48762547-48775386 transcript_region:SL2.40ch07:48762547..48775386+ functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00024347g0002.1 protein ; (*GB) gi|255557172|ref|XP_002519617.1| (e_value=5e-22) protein translocase, putative [Ricinus communis];; (*TAIR) AT5G24650.1 (e_value=2e-17) | Symbols: | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:8437123-8438859 FORWARD LENGTH=259;; (*ITAG) Solyc03g079940.2.1 (e_value=5e-20) genomic_reference:SL2.40ch03 gene_region:45400646-45404642 transcript_region:SL2.40ch03:45400646..45404642- go_terms:GO:0015450 functional_description:"Mitochondrial import inner membrane translocase (AHRD V1 **-- C1FD57_9CHLO); contains Interpro domain(s) IPR001660 Sterile alpha motif SAM "; GO:0015450 NbS00010738g0002.1 protein ; (*GB) gi|294463006|gb|ADE77041.1| (e_value=1e-15) unknown [Picea sitchensis];; (*SWP) sp|Q84W92|ANM13_ARATH (e_value=2e-15) Probable histone-arginine methyltransferase 1.3 OS=Arabidopsis thaliana GN=PRMT13 PE=2 SV=3;; (*TAIR) AT3G06930.1 (e_value=1e-16) | Symbols: ATPRMT4B, PRMT4B | protein arginine methyltransferase 4B | chr3:2185469-2189296 REVERSE LENGTH=534;; (*ITAG) Solyc05g054240.2.1 (e_value=1e-16) genomic_reference:SL2.40ch05 gene_region:63345136-63354382 transcript_region:SL2.40ch05:63345136..63354382+ go_terms:GO:0008168 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 ***- D7L611_ARALY); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0008168 NbS00010738g0003.1 protein NbS00010738g0005.1 protein NbS00003990g0003.1 protein ; (*GB) gi|7682432|gb|AAF67262.1|AF165186_1 (e_value=7e-16) MAP kinase kinase [Nicotiana tabacum];; (*ITAG) Solyc12g009020.1.1 (e_value=4e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2321616-2325502 transcript_region:SL2.40ch12:2321616..2325502- go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00025933g0003.1 protein NbS00023012g0002.1 protein NbS00020414g0002.1 protein NbS00033632g0001.1 protein ; (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-20) Polyprotein, 3'-partial, putative [Solanum demissum];; (*ITAG) Solyc08g060910.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42975229-42978250 transcript_region:SL2.40ch08:42975229..42978250- go_terms:GO:0008270,GO:0006278 functional_description:"Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contains Interpro domain(s) IPR000477 RNA-directed DNA polymerase (reverse transcriptase) "; GO:0008270,GO:0006278 NbS00001688g0001.1 protein NbS00031922g0003.1 protein NbS00037137g0003.1 protein NbS00015603g0001.1 protein ; (*TAIR) AT1G80460.1 (e_value=7e-14) | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522;; (*ITAG) Solyc03g117490.2.1 (e_value=1e-15) genomic_reference:SL2.40ch03 gene_region:60690878-60693820 transcript_region:SL2.40ch03:60690878..60693820+ go_terms:GO:0006072,GO:0005975 functional_description:"Glycerol kinase (AHRD V1 ***- Q6RUF8_SOYBN); contains Interpro domain(s) IPR005999 Glycerol kinase "; GO:0006072,GO:0005975 NbS00021759g0001.1 protein ; (*GB) gi|225440948|ref|XP_002283113.1| (e_value=4e-50) PREDICTED: GDSL esterase/lipase At5g03610 [Vitis vinifera];; (*SWP) sp|Q9LZS7|GDL71_ARATH (e_value=7e-43) GDSL esterase/lipase At5g03610 OS=Arabidopsis thaliana GN=At5g03610 PE=2 SV=1;; (*TAIR) AT5G03610.1 (e_value=5e-44) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359;; (*ITAG) Solyc09g009700.2.1 (e_value=1e-62) genomic_reference:SL2.40ch09 gene_region:3088430-3096264 transcript_region:SL2.40ch09:3088430..3096264+ go_terms:GO:0016298,GO:0004091 functional_description:"GDSL esterase/lipase At5g03610 (AHRD V1 **** GDL71_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298,GO:0004091 NbS00001107g0001.1 protein NbS00009858g0002.1 protein NbC25712540g0001.1 protein ; (*GB) gi|225432660|ref|XP_002282406.1| (e_value=8e-36) PREDICTED: uncharacterized protein LOC100259756 isoform 1 [Vitis vinifera];; (*TAIR) AT1G05385.1 (e_value=5e-37) | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa protein-related | chr1:1582747-1583648 REVERSE LENGTH=199;; (*ITAG) Solyc09g076030.2.1 (e_value=3e-46) genomic_reference:SL2.40ch09 gene_region:63211160-63214384 transcript_region:SL2.40ch09:63211160..63214384- functional_description:"Chromosome 04 contig 1 DNA sequence (AHRD V1 *-*- Q01AH6_OSTTA)"; NbS00000758g0002.1 protein NbS00000758g0003.1 protein NbC25527728g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-14) RNase H family protein [Solanum demissum]; NbS00031061g0001.1 protein NbS00001691g0001.1 protein NbS00008944g0001.1 protein ; (*GB) gi|359480807|ref|XP_002277575.2| (e_value=6e-38) PREDICTED: uncharacterized protein LOC100266406 [Vitis vinifera];; (*TAIR) AT3G50370.1 (e_value=6e-22) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=4e-76) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbC25387537g0001.1 protein ; (*GB) gi|225440360|ref|XP_002270444.1| (e_value=3e-14) PREDICTED: kinesin-like protein KIF22-B [Vitis vinifera];; (*ITAG) Solyc09g010810.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:4096964-4103593 transcript_region:SL2.40ch09:4096964..4103593- go_terms:GO:0003677,GO:0003777 functional_description:"Kinesin-like protein (AHRD V1 ***- Q8L7B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0003677,GO:0003777 NbS00005734g0103.1 protein NbS00003236g0001.1 protein NbS00003236g0003.1 protein NbS00003236g0004.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=1e-13) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc09g059490.1.1 (e_value=1e-34) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003236g0007.1 protein NbS00020602g0003.1 protein NbS00012757g0001.1 protein ; (*GB) gi|225445266|ref|XP_002284542.1| (e_value=7e-26) PREDICTED: ras-related protein RHN1 isoform 1 [Vitis vinifera];; (*SWP) sp|P31583|RHN1_NICPL (e_value=4e-15) Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1;; (*ITAG) Solyc02g081380.2.1 (e_value=4e-17) genomic_reference:SL2.40ch02 gene_region:39946724-39951257 transcript_region:SL2.40ch02:39946724..39951257- go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-5C (AHRD V1 ***- C1BU54_9MAXI); contains Interpro domain(s) IPR015599 Rab5-related "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00012757g0002.1 protein ; (*GB) gi|224143524|ref|XP_002324985.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT3G29300.1 (e_value=4e-12) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; Has 451 Blast hits to 349 proteins in 91 species: Archae - 0; Bacteria - 85; Metazoa - 81; Fungi - 88; Plants - 18; Viruses - 1; Other Eukaryotes - 178 (source: NCBI BLink). | chr3:11247011-11247652 FORWARD LENGTH=213; NbS00002192g0001.1 protein ; (*GB) gi|359488677|ref|XP_002273777.2| (e_value=9e-43) PREDICTED: polyribonucleotide nucleotidyltransferase-like [Vitis vinifera];; (*TAIR) AT5G14580.1 (e_value=8e-42) | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991;; (*ITAG) Solyc02g086600.2.1 (e_value=3e-60) genomic_reference:SL2.40ch02 gene_region:43834786-43843201 transcript_region:SL2.40ch02:43834786..43843201- go_terms:GO:0003729 functional_description:"Polyribonucleotide nucleotidyltransferase (AHRD V1 ***- Q1PVN2_9BACT); contains Interpro domain(s) IPR012162 Polyribonucleotide nucleotidyltransferase "; GO:0003729 NbS00042712g0001.1 protein NbS00005059g0001.1 protein ; (*ITAG) Solyc09g055720.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:39639762-39645503 transcript_region:SL2.40ch09:39639762..39645503+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00024547g0001.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003214g0002.1 protein NbS00007926g0003.1 protein NbS00010088g0002.1 protein NbS00003899g0001.1 protein NbS00006314g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-57) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006412g0002.1 protein NbC23224697g0001.1 protein ; (*GB) gi|356511439|ref|XP_003524434.1| (e_value=2e-18) PREDICTED: uncharacterized protein At4g10930-like [Glycine max];; (*ITAG) Solyc12g055910.1.1 (e_value=9e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47252798-47265865 transcript_region:SL2.40ch12:47252798..47265865+ go_terms:GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7LYU3_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008270 NbS00052617g0001.1 protein NbS00043369g0001.1 protein ; (*GB) gi|255558952|ref|XP_002520499.1| (e_value=1e-35) d-lactate dehydrogenase, putative [Ricinus communis];; (*TAIR) AT2G46760.1 (e_value=8e-32) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=2e-34) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00002366g0003.1 protein NbS00013940g0001.1 protein ; (*GB) gi|356554832|ref|XP_003545746.1| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100819363 [Glycine max];; (*SWP) sp|Q9S7T1|GTE3_ARATH (e_value=2e-18) Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1;; (*TAIR) AT1G73150.1 (e_value=2e-19) | Symbols: GTE3 | global transcription factor group E3 | chr1:27504327-27505996 REVERSE LENGTH=461;; (*ITAG) Solyc02g091660.2.1 (e_value=8e-23) genomic_reference:SL2.40ch02 gene_region:47480890-47483281 transcript_region:SL2.40ch02:47480890..47483281- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *--* D7KG11_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00012924g0003.1 protein NbS00009087g0001.1 protein NbS00018633g0001.1 protein NbS00015191g0002.1 protein NbS00037451g0001.1 protein NbS00018819g0102.1 protein NbS00013985g0001.1 protein ; (*GB) gi|359475843|ref|XP_002282918.2| (e_value=9e-121) PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=7e-93) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=5e-94) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc08g029130.2.1 (e_value=4e-141) genomic_reference:SL2.40ch08 gene_region:22756077-22781193 transcript_region:SL2.40ch08:22756077..22781193+ functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 *-*- B1AR17_MOUSE); contains Interpro domain(s) IPR009462 Protein of unknown function DUF1086 "; NbS00020145g0002.1 protein NbS00031160g0001.1 protein ; (*GB) gi|125572922|gb|EAZ14437.1| (e_value=5e-26) hypothetical protein OsJ_04357 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SXB5|Y1135_ARATH (e_value=1e-22) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11305 OS=Arabidopsis thaliana GN=At1g11305 PE=3 SV=1;; (*TAIR) AT1G11300.1 (e_value=1e-23) | Symbols: | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding | chr1:3794389-3800719 FORWARD LENGTH=1650;; (*ITAG) Solyc07g053080.2.1 (e_value=3e-53) genomic_reference:SL2.40ch07 gene_region:58841966-58845130 transcript_region:SL2.40ch07:58841966..58845130- go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00009813g0002.1 protein NbS00009293g0001.1 protein NbS00035948g0002.1 protein NbS00038453g0001.1 protein ; (*GB) gi|224128808|ref|XP_002328972.1| (e_value=9e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SWF9|ZFNL_PEA (e_value=8e-23) Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT3G02830.1 (e_value=6e-20) | Symbols: ZFN1 | zinc finger protein 1 | chr3:614075-615916 FORWARD LENGTH=397;; (*ITAG) Solyc11g008900.1.1 (e_value=6e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3068520-3076321 transcript_region:SL2.40ch11:3068520..3076321+ go_terms:GO:0003677,GO:0004518 functional_description:"Zinc finger CCCH domain-containing protein 66 (AHRD V1 ***- C3H66_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003677,GO:0004518 NbS00029698g0001.1 protein NbS00022316g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=6e-54) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00029548g0001.1 protein NbS00029548g0003.1 protein ; (*GB) gi|255556314|ref|XP_002519191.1| (e_value=9e-128) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LSQ2|PP239_ARATH (e_value=2e-90) Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1;; (*TAIR) AT3G16890.1 (e_value=1e-91) | Symbols: PPR40 | pentatricopeptide (PPR) domain protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659;; (*ITAG) Solyc06g007850.2.1 (e_value=3e-45) genomic_reference:SL2.40ch06 gene_region:1750049-1752394 transcript_region:SL2.40ch06:1750049..1752394- go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00037141g0004.1 protein NbS00008679g0001.1 protein NbS00008679g0002.1 protein NbS00015491g0101.1 protein NbS00015491g0102.1 protein NbS00053587g0002.1 protein NbS00026184g0003.1 protein NbS00018981g0003.1 protein NbS00018981g0007.1 protein NbS00014234g0003.1 protein NbS00028720g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-16) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00005069g0001.1 protein ; (*GB) gi|255536795|ref|XP_002509464.1| (e_value=6e-17) eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|P56820|EIF3D_ARATH (e_value=2e-13) Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1;; (*TAIR) AT5G44320.1 (e_value=4e-17) | Symbols: | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | chr5:17854901-17856667 REVERSE LENGTH=588;; (*ITAG) Solyc02g078120.1.1 (e_value=1e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:37474003-37475736 transcript_region:SL2.40ch02:37474003..37475736- go_terms:GO:0005515 functional_description:"Eukaryotic translation initiation factor 3 subunit 7 (AHRD V1 ***- Q9FKV6_ARATH); contains Interpro domain(s) IPR007783 Eukaryotic translation initiation factor 3, subunit 7 "; GO:0005515 NbS00021850g0001.1 protein NbS00025169g0001.1 protein NbS00013228g0004.1 protein NbS00000926g0003.1 protein NbC23762525g0001.1 protein ; (*GB) gi|359480018|ref|XP_002273034.2| (e_value=4e-14) PREDICTED: structural maintenance of chromosomes protein 1A-like [Vitis vinifera];; (*ITAG) Solyc06g083870.2.1 (e_value=1e-29) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00002227g0001.1 protein NbS00012662g0101.1 protein NbS00034083g0102.1 protein NbS00038351g0001.1 protein NbS00034866g0002.1 protein NbS00047628g0001.1 protein NbS00030121g0003.1 protein NbC23684155g0001.1 protein ; (*GB) gi|359486641|ref|XP_002279332.2| (e_value=1e-38) PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Vitis vinifera];; (*SWP) sp|A6WXF0|ODO1_OCHA4 (e_value=8e-23) 2-oxoglutarate dehydrogenase E1 component OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucA PE=3 SV=1;; (*TAIR) AT5G65750.1 (e_value=1e-38) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr5:26304212-26307947 FORWARD LENGTH=1025;; (*ITAG) Solyc04g011350.2.1 (e_value=4e-43) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00029985g0001.1 protein NbS00029780g0006.1 protein ; (*GB) gi|57013998|ref|YP_173469.1| (e_value=2e-36) hypothetical protein NitaMp132 [Nicotiana tabacum]; NbS00017836g0005.1 protein NbC25687762g0001.1 protein NbC25687762g0002.1 protein NbC23830543g0001.1 protein ; (*GB) gi|166245160|dbj|BAG06272.1| (e_value=4e-37) cellulose synthase Z632 [Zinnia elegans];; (*SWP) sp|Q8L778|CESA5_ARATH (e_value=1e-37) Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2;; (*TAIR) AT5G09870.1 (e_value=1e-38) | Symbols: CESA5 | cellulose synthase 5 | chr5:3073356-3077974 FORWARD LENGTH=1069;; (*ITAG) Solyc08g061100.2.1 (e_value=2e-38) genomic_reference:SL2.40ch08 gene_region:43867693-43876166 transcript_region:SL2.40ch08:43867693..43876166- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9IKV7_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbC24976872g0001.1 protein ; (*GB) gi|255540111|ref|XP_002511120.1| (e_value=4e-77) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT3G48770.1 (e_value=3e-61) | Symbols: | DNA binding;ATP binding | chr3:18079261-18086817 REVERSE LENGTH=1899;; (*ITAG) Solyc03g097670.2.1 (e_value=3e-113) genomic_reference:SL2.40ch03 gene_region:53436068-53446094 transcript_region:SL2.40ch03:53436068..53446094- go_terms:GO:0005524 functional_description:"ATP binding protein (AHRD V1 **-- D7LS09_ARALY); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00020262g0002.1 protein ; (*GB) gi|297738867|emb|CBI28112.3| (e_value=2e-87) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G13400.1 (e_value=8e-82) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:7787822-7791149 REVERSE LENGTH=357;; (*ITAG) Solyc04g049620.2.1 (e_value=3e-82) genomic_reference:SL2.40ch04 gene_region:41722002-41732181 transcript_region:SL2.40ch04:41722002..41732181+ go_terms:GO:0016491 functional_description:"Predicted CDS Pa_1_6620 (AHRD V1 ***- B2ABA0_PODAN); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbC23755733g0001.1 protein ; (*GB) gi|30013671|gb|AAP03878.1| (e_value=2e-52) Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum];; (*SWP) sp|Q9C626|FB37_ARATH (e_value=3e-37) F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1;; (*TAIR) AT1G47056.1 (e_value=2e-38) | Symbols: VFB1 | VIER F-box proteine 1 | chr1:17276103-17277659 REVERSE LENGTH=518;; (*ITAG) Solyc02g092990.1.1 (e_value=2e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:48531618-48533270 transcript_region:SL2.40ch02:48531618..48533270+ go_terms:GO:0004842 functional_description:"SCF E3 ubiquitin ligase complex F-box protein grrA (AHRD V1 *-** C9SVX6_VERA1); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0004842 NbS00025388g0002.1 protein ; (*ITAG) Solyc00g020020.2.1 (e_value=2e-34) genomic_reference:SL2.40ch00 gene_region:11807384-11808467 transcript_region:SL2.40ch00:11807384..11808467+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018807g0001.1 protein NbC24536919g0001.1 protein ; (*GB) gi|255567439|ref|XP_002524699.1| (e_value=2e-81) ATATH13, putative [Ricinus communis];; (*SWP) sp|Q55G83|ABKC_DICDI (e_value=5e-27) Probable serine/threonine-protein kinase abkC OS=Dictyostelium discoideum GN=abkC PE=3 SV=1;; (*TAIR) AT1G11390.1 (e_value=1e-75) | Symbols: | Protein kinase superfamily protein | chr1:3834762-3837305 REVERSE LENGTH=624;; (*ITAG) Solyc03g006660.2.1 (e_value=5e-91) genomic_reference:SL2.40ch03 gene_region:1233241-1241413 transcript_region:SL2.40ch03:1233241..1241413+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 2 (AHRD V1 *--* ADCK2_HUMAN); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00052154g0002.1 protein ; (*GB) gi|255550217|ref|XP_002516159.1| (e_value=7e-47) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*TAIR) AT2G26280.1 (e_value=3e-44) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=2e-58) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbC23259490g0001.1 protein ; (*GB) gi|30696040|ref|NP_568757.2| (e_value=3e-15) protein SWITCH1 (protein DYAD) [Arabidopsis thaliana];; (*SWP) sp|Q9FGN8|DYAD_ARATH (e_value=1e-16) Protein DYAD OS=Arabidopsis thaliana GN=DYAD PE=1 SV=2;; (*TAIR) AT5G51330.1 (e_value=8e-18) | Symbols: SWI1, DYAD | SWITCH1 | chr5:20858752-20861680 REVERSE LENGTH=639;; (*ITAG) Solyc03g093370.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:48086463-48090464 transcript_region:SL2.40ch03:48086463..48090464- functional_description:"Protein DYAD (AHRD V1 ***- DYAD_ARATH)"; NbS00015671g0103.1 protein NbS00011460g0001.1 protein NbS00031751g0001.1 protein ; (*GB) gi|357436067|ref|XP_003588309.1| (e_value=3e-18) hypothetical protein MTR_1g005780 [Medicago truncatula]; NbS00007819g0002.1 protein ; (*GB) gi|297740371|emb|CBI30553.3| (e_value=2e-112) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6WKZ8|UBR2_MOUSE (e_value=3e-13) E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2;; (*TAIR) AT5G02310.1 (e_value=5e-83) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=1e-158) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00007819g0004.1 protein NbS00006185g0001.1 protein ; (*GB) gi|297738822|emb|CBI28067.3| (e_value=1e-97) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q14703|MBTP1_HUMAN (e_value=1e-52) Membrane-bound transcription factor site-1 protease OS=Homo sapiens GN=MBTPS1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=7e-97) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=4e-98) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00011792g0201.1 protein NbS00021044g0001.1 protein ; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=0.0) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*SWP) sp|Q07864|DPOE1_HUMAN (e_value=4e-94) DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5;; (*TAIR) AT1G08260.1 (e_value=0.0) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067130.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49948786-49956408 transcript_region:SL2.40ch11:49948786..49956408+ go_terms:GO:0008152,GO:0006260 functional_description:"DNA polymerase (AHRD V1 ***- B9MYH6_POPTR); contains Interpro domain(s) IPR006134 DNA-directed DNA polymerase, family B, conserved region "; GO:0008152,GO:0006260 NbS00021044g0006.1 protein ; (*GB) gi|359479378|ref|XP_002269920.2| (e_value=1e-81) PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera];; (*TAIR) AT1G08260.1 (e_value=1e-57) | Symbols: EMB142, EMB2284, POL2A, TIL1, EMB529, ABO4, ESD7 | DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161;; (*ITAG) Solyc11g067140.1.1 (e_value=2e-110) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49959731-49970526 transcript_region:SL2.40ch11:49959731..49970526+ go_terms:GO:0005634 functional_description:"DNA polymerase (AHRD V1 ***- B9MYH6_POPTR); contains Interpro domain(s) IPR013697 Region of unknown function DUF1744 "; GO:0005634 NbS00037818g0001.1 protein NbS00050856g0004.1 protein ; (*ITAG) Solyc04g051170.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49010145-49011402 transcript_region:SL2.40ch04:49010145..49011402- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00054899g0001.1 protein ; (*GB) gi|302142922|emb|CBI20217.3| (e_value=6e-34) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G73170.2 (e_value=9e-25) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:27511722-27514395 REVERSE LENGTH=538;; (*ITAG) Solyc12g014150.1.1 (e_value=4e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4979762-4989302 transcript_region:SL2.40ch12:4979762..4989302+ go_terms:GO:0005524,GO:0017111 functional_description:"Single-stranded nucleic acid binding R3H domain protein (AHRD V1 **-- C7QND6_CYAP0); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00006592g0002.1 protein NbS00052642g0002.1 protein NbS00020811g0002.1 protein ; (*GB) gi|255538346|ref|XP_002510238.1| (e_value=3e-30) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc04g079080.2.1 (e_value=1e-34) genomic_reference:SL2.40ch04 gene_region:61264421-61267652 transcript_region:SL2.40ch04:61264421..61267652+ go_terms:GO:0008290,GO:0005509 functional_description:"Calmodulin (AHRD V1 *-*- Q178H5_AEDAE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0008290,GO:0005509 NbS00019068g0001.1 protein ; (*GB) gi|27544456|dbj|BAC54966.1| (e_value=1e-19) pectinmethylesterase inhibitor [Actinidia deliciosa];; (*SWP) sp|P83326|PMEI_ACTDE (e_value=2e-20) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*ITAG) Solyc09g072950.1.1 (e_value=5e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61125499-61125981 transcript_region:SL2.40ch09:61125499..61125981- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q2X5_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbC25730842g0001.1 protein NbS00053377g0001.1 protein ; (*GB) gi|225452161|ref|XP_002263932.1| (e_value=7e-73) PREDICTED: protein TPLATE-like [Vitis vinifera];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=1e-63) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=7e-65) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=4e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00053377g0002.1 protein ; (*GB) gi|356558753|ref|XP_003547667.1| (e_value=1e-76) PREDICTED: uncharacterized protein LOC100787122 [Glycine max];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=6e-60) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=5e-61) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=3e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00015084g0003.1 protein NbS00054143g0001.1 protein NbS00000930g0002.1 protein NbS00000930g0003.1 protein NbS00058376g0002.1 protein NbS00016578g0102.1 protein NbS00027949g0001.1 protein NbS00008383g0001.1 protein NbS00042493g0001.1 protein NbS00042493g0002.1 protein NbS00017100g0003.1 protein NbS00023228g0001.1 protein NbS00022513g0003.1 protein NbS00059336g0001.1 protein NbC23982093g0001.1 protein ; (*GB) gi|356529091|ref|XP_003533130.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100812282 [Glycine max];; (*TAIR) AT5G49580.1 (e_value=1e-23) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:20123823-20126813 REVERSE LENGTH=695;; (*ITAG) Solyc07g026810.2.1 (e_value=1e-40) genomic_reference:SL2.40ch07 gene_region:31740324-31752580 transcript_region:SL2.40ch07:31740324..31752580- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2KX40_9FIRM); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00047921g0002.1 protein NbS00059231g0001.1 protein ; (*GB) gi|224126907|ref|XP_002319956.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58450.1 (e_value=4e-23) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057910.2.1 (e_value=7e-31) genomic_reference:SL2.40ch09 gene_region:47817635-47838635 transcript_region:SL2.40ch09:47817635..47838635+ go_terms:GO:0005488 functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 **-- NAA25_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00007160g0002.1 protein ; (*GB) gi|224094777|ref|XP_002310231.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZ37|AP3S_ARATH (e_value=5e-27) AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1;; (*TAIR) AT3G50860.1 (e_value=3e-28) | Symbols: | Clathrin adaptor complex small chain family protein | chr3:18902346-18903959 FORWARD LENGTH=166;; (*ITAG) Solyc02g085240.2.1 (e_value=5e-37) genomic_reference:SL2.40ch02 gene_region:42786010-42788435 transcript_region:SL2.40ch02:42786010..42788435+ go_terms:GO:0008565,GO:0030276 functional_description:"AP-3 complex subunit sigma-2 (AHRD V1 ***- B4FA26_MAIZE); contains Interpro domain(s) IPR016635 Adaptor protein complex, sigma subunit "; GO:0008565,GO:0030276 NbS00059868g0001.1 protein NbS00001725g0001.1 protein NbC23283790g0001.1 protein ; (*GB) gi|115435982|ref|NP_001042749.1| (e_value=7e-31) Os01g0279700 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SDI4|PHT41_ORYSJ (e_value=2e-32) Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1;; (*TAIR) AT2G29650.3 (e_value=5e-33) | Symbols: ANTR1 | phosphate transporter 4;1 | chr2:12673685-12675722 REVERSE LENGTH=400;; (*ITAG) Solyc09g031750.2.1 (e_value=7e-32) genomic_reference:SL2.40ch09 gene_region:23690774-23696189 transcript_region:SL2.40ch09:23690774..23696189+ go_terms:GO:0005315 functional_description:"Vesicular glutamate transporter (AHRD V1 **-* B3A011_9PULM); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005315 NbS00022020g0004.1 protein NbS00019873g0101.1 protein NbS00019873g0201.1 protein NbS00002486g0102.1 protein NbS00001684g0002.1 protein NbS00009292g0001.1 protein ; (*GB) gi|224131358|ref|XP_002328519.1| (e_value=9e-64) hypothetical protein POPTRDRAFT_294882 [Populus trichocarpa];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=7e-53) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=5e-54) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=4e-50) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00031087g0001.1 protein NbS00000286g0005.1 protein NbS00060633g0003.1 protein NbS00026037g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-82) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013528g0001.1 protein NbS00048441g0001.1 protein NbS00032993g0001.1 protein NbS00034845g0001.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=2e-26) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00017682g0002.1 protein NbS00042165g0001.1 protein NbS00013544g0001.1 protein NbS00021128g0001.1 protein NbS00021503g0001.1 protein ; (*GB) gi|255537505|ref|XP_002509819.1| (e_value=3e-15) ATP binding protein, putative [Ricinus communis];; (*ITAG) Solyc08g081210.2.1 (e_value=6e-27) genomic_reference:SL2.40ch08 gene_region:61435787-61442377 transcript_region:SL2.40ch08:61435787..61442377- go_terms:GO:0016301 functional_description:"Protein serine/threonine kinase (AHRD V1 *-** D3BP85_POLPA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301 NbS00006037g0001.1 protein NbS00060361g0001.1 protein NbS00018976g0002.1 protein ; (*SWP) sp|Q39013|NAC2_ARATH (e_value=2e-12) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G01720.1 (e_value=1e-13) | Symbols: ATAF1, ANAC002 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | chr1:268471-269514 FORWARD LENGTH=289;; (*ITAG) Solyc06g073050.2.1 (e_value=6e-13) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00035712g0001.1 protein NbS00009180g0001.1 protein NbS00020871g0001.1 protein NbS00059615g0001.1 protein NbC23965981g0001.1 protein ; (*GB) gi|218193623|gb|EEC76050.1| (e_value=3e-52) hypothetical protein OsI_13244 [Oryza sativa Indica Group];; (*SWP) sp|Q0J3D9|COPA3_ORYSJ (e_value=2e-53) Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1;; (*TAIR) AT1G62020.1 (e_value=7e-53) | Symbols: | Coatomer, alpha subunit | chr1:22919814-22923728 FORWARD LENGTH=1216;; (*ITAG) Solyc04g080980.2.1 (e_value=3e-55) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00008338g0001.1 protein NbS00024591g0001.1 protein NbC24204573g0001.1 protein ; (*ITAG) Solyc05g008350.2.1 (e_value=2e-22) genomic_reference:SL2.40ch05 gene_region:2707862-2717543 transcript_region:SL2.40ch05:2707862..2717543+ go_terms:GO:0017127 functional_description:"ABC transporter G family member 7 (AHRD V1 **** AB7G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0017127 NbS00015700g0001.1 protein NbC23991205g0001.1 protein ; (*GB) gi|255578791|ref|XP_002530252.1| (e_value=2e-43) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G39420.2 (e_value=2e-45) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:18339731-18354701 FORWARD LENGTH=3184;; (*ITAG) Solyc04g051570.2.1 (e_value=9e-49) genomic_reference:SL2.40ch04 gene_region:50007678-50019459 transcript_region:SL2.40ch04:50007678..50019459+ functional_description:"AT4G39450-like protein (Fragment) (AHRD V1 *--- D6PRI6_9BRAS)"; NbS00000635g0001.1 protein NbS00028219g0002.1 protein NbS00037525g0002.1 protein NbS00011015g0002.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011015g0008.1 protein NbS00011015g0009.1 protein NbC24209059g0001.1 protein ; (*GB) gi|357454255|ref|XP_003597408.1| (e_value=3e-21) hypothetical protein MTR_2g097780 [Medicago truncatula];; (*TAIR) AT5G59210.2 (e_value=5e-21) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=433;; (*ITAG) Solyc09g055760.2.1 (e_value=2e-22) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00008946g0003.1 protein NbS00016216g0002.1 protein NbS00016216g0006.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=3e-38) predicted protein [Populus trichocarpa]; NbS00050311g0001.1 protein NbS00002089g0002.1 protein NbS00035925g0002.1 protein NbS00005953g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=1e-15) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00005953g0002.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=5e-23) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g011460.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbC23440593g0001.1 protein ; (*GB) gi|302399426|gb|ADL36962.1| (e_value=1e-41) At1g62390-like protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G62390.1 (e_value=2e-41) | Symbols: Phox2 | Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein | chr1:23084632-23086887 REVERSE LENGTH=751;; (*ITAG) Solyc02g081200.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39832231-39834567 transcript_region:SL2.40ch02:39832231..39834567- go_terms:GO:0005488 functional_description:"At1g62390-like protein (Fragment) (AHRD V1 *--- C0JCT1_9BRAS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00040890g0002.1 protein NbS00007120g0001.1 protein NbS00005296g0001.1 protein NbS00001771g0102.1 protein NbS00022000g0005.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=8e-19) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00041451g0002.1 protein NbS00019334g0002.1 protein NbS00049838g0002.1 protein NbS00004159g0001.1 protein NbS00013335g0001.1 protein NbS00014367g0002.1 protein NbS00014367g0101.1 protein NbS00017332g0002.1 protein NbS00003840g0002.1 protein NbS00009239g0001.1 protein NbC24413316g0001.1 protein ; (*GB) gi|358344187|ref|XP_003636173.1| (e_value=3e-28) Elongator complex protein [Medicago truncatula];; (*SWP) sp|Q9C778|ELP4_ARATH (e_value=3e-20) Elongator complex protein 4 OS=Arabidopsis thaliana GN=ELP4 PE=1 SV=1;; (*TAIR) AT3G11220.1 (e_value=2e-21) | Symbols: ELO1 | Paxneb protein-related | chr3:3513830-3515990 REVERSE LENGTH=355;; (*ITAG) Solyc11g010950.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3999243-4002830 transcript_region:SL2.40ch11:3999243..4002830+ go_terms:GO:0033588 functional_description:"Elongator complex protein 4 (AHRD V1 ***- ELP4_BOVIN); contains Interpro domain(s) IPR008728 Elongator complex protein 4 "; GO:0033588 NbS00032425g0001.1 protein ; (*GB) gi|356497427|ref|XP_003517562.1| (e_value=8e-43) PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like isoform 2 [Glycine max];; (*TAIR) AT4G14500.1 (e_value=1e-41) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:8334391-8337022 FORWARD LENGTH=433;; (*ITAG) Solyc06g053790.2.1 (e_value=8e-70) genomic_reference:SL2.40ch06 gene_region:33139221-33147721 transcript_region:SL2.40ch06:33139221..33147721+ functional_description:"Membrane related protein-like (AHRD V1 **-- Q9LS84_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; NbS00032425g0005.1 protein NbS00017488g0001.1 protein NbS00023433g0005.1 protein ; (*GB) gi|357446017|ref|XP_003593286.1| (e_value=0.0) Pentatricopeptide repeat-containing protein [Medicago truncatula];; (*SWP) sp|O65543|PP343_ARATH (e_value=2e-168) Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2 SV=2;; (*TAIR) AT4G31070.1 (e_value=7e-170) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:15118696-15120537 REVERSE LENGTH=613;; (*ITAG) Solyc07g042760.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53591827-53593638 transcript_region:SL2.40ch07:53591827..53593638+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBJ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00005233g0102.1 protein NbS00011737g0005.1 protein ; (*GB) gi|255542404|ref|XP_002512265.1| (e_value=4e-22) ATP-dependent helicase NAM7, putative [Ricinus communis];; (*SWP) sp|Q8GYD9|SDE3_ARATH (e_value=5e-18) Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1;; (*TAIR) AT1G05460.1 (e_value=4e-19) | Symbols: SDE3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:1601357-1604658 REVERSE LENGTH=1002;; (*ITAG) Solyc06g054020.2.1 (e_value=6e-21) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00011737g0006.1 protein NbS00007894g0002.1 protein NbS00043908g0001.1 protein ; (*GB) gi|296086267|emb|CBI31708.3| (e_value=4e-112) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39580.1 (e_value=1e-66) | Symbols: | CONTAINS InterPro DOMAIN/s: Putative zinc-finger domain (InterPro:IPR019607); Has 249 Blast hits to 219 proteins in 85 species: Archae - 0; Bacteria - 144; Metazoa - 29; Fungi - 8; Plants - 50; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | chr2:16510540-16516948 FORWARD LENGTH=1577;; (*ITAG) Solyc04g011380.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:3850974-3863049 transcript_region:SL2.40ch04:3850974..3863049- go_terms:GO:0008152 functional_description:"Binding protein (AHRD V1 ***- D7LD65_ARALY); contains Interpro domain(s) IPR019607 Putative zinc-finger domain "; GO:0008152 NbS00052866g0001.1 protein NbS00015101g0001.1 protein NbS00043330g0001.1 protein NbS00012281g0001.1 protein NbS00026903g0001.1 protein NbS00016504g0001.1 protein NbS00004320g0002.1 protein NbS00003249g0001.1 protein NbS00023456g0003.1 protein ; (*ITAG) Solyc09g005140.1.1 (e_value=2e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:130530-142052 transcript_region:SL2.40ch09:130530..142052- functional_description:"Unknown Protein (AHRD V1)"; NbS00034124g0001.1 protein NbS00008361g0002.1 protein NbS00011954g0001.1 protein NbS00054852g0001.1 protein NbC23868495g0001.1 protein ; (*ITAG) Solyc07g006030.2.1 (e_value=8e-22) genomic_reference:SL2.40ch07 gene_region:866918-880889 transcript_region:SL2.40ch07:866918..880889- go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021187g0001.1 protein NbS00043438g0001.1 protein NbS00019067g0001.1 protein NbS00009054g0001.1 protein NbS00031984g0001.1 protein NbS00022719g0001.1 protein NbS00022719g0003.1 protein NbS00026891g0002.1 protein NbS00052324g0001.1 protein ; (*GB) gi|113205316|gb|ABI34339.1| (e_value=6e-14) Polyprotein, 3'-partial, putative [Solanum demissum];; (*ITAG) Solyc08g060910.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42975229-42978250 transcript_region:SL2.40ch08:42975229..42978250- go_terms:GO:0008270,GO:0006278 functional_description:"Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contains Interpro domain(s) IPR000477 RNA-directed DNA polymerase (reverse transcriptase) "; GO:0008270,GO:0006278 NbC24832455g0001.1 protein ; (*ITAG) Solyc02g068180.2.1 (e_value=3e-19) genomic_reference:SL2.40ch02 gene_region:32778437-32785527 transcript_region:SL2.40ch02:32778437..32785527+ go_terms:GO:0015421 functional_description:"Cobalt import ATP-binding protein CbiO 2 (AHRD V1 ***- D4QI89_ENTFC); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0015421 NbS00048261g0004.1 protein NbS00060546g0001.1 protein ; (*GB) gi|351722239|ref|NP_001237237.1| (e_value=2e-14) uncharacterized protein LOC100306593 [Glycine max]; NbC23955046g0001.1 protein ; (*GB) gi|356535492|ref|XP_003536279.1| (e_value=4e-20) PREDICTED: exocyst complex component 7-like [Glycine max];; (*TAIR) AT5G52340.1 (e_value=3e-19) | Symbols: ATEXO70A2, EXO70A2 | exocyst subunit exo70 family protein A2 | chr5:21250802-21253939 FORWARD LENGTH=631;; (*ITAG) Solyc11g006620.1.1 (e_value=6e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbC24273094g0001.1 protein ; (*GB) gi|313881231|gb|ADR82620.1| (e_value=4e-56) plasma membrane Ca2+-ATPase [Eichhornia crassipes];; (*SWP) sp|O81108|ACA2_ARATH (e_value=2e-56) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1;; (*TAIR) AT1G27770.2 (e_value=1e-57) | Symbols: ACA1, PEA1 | autoinhibited Ca2+-ATPase 1 | chr1:9671912-9676010 REVERSE LENGTH=946;; (*ITAG) Solyc04g077870.2.1 (e_value=5e-63) genomic_reference:SL2.40ch04 gene_region:60348959-60355925 transcript_region:SL2.40ch04:60348959..60355925+ go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00029933g0001.1 protein NbS00005862g0001.1 protein ; (*GB) gi|226505442|ref|NP_001147404.1| (e_value=2e-21) RING-H2 finger protein ATL3I [Zea mays];; (*SWP) sp|Q7X843|ATL48_ARATH (e_value=1e-18) RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2 SV=2;; (*TAIR) AT3G48030.1 (e_value=1e-19) | Symbols: | hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727954 REVERSE LENGTH=349; NbS00042198g0003.1 protein ; (*GB) gi|75252690|sp|Q5YLB5.1|GYRA_NICBE (e_value=2e-163) RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB5|GYRA_NICBE (e_value=7e-165) DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1;; (*TAIR) AT3G10690.1 (e_value=3e-94) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950;; (*ITAG) Solyc01g096900.2.1 (e_value=6e-151) genomic_reference:SL2.40ch01 gene_region:79648895-79670117 transcript_region:SL2.40ch01:79648895..79670117+ go_terms:GO:0005694 functional_description:"DNA gyrase subunit A family protein (AHRD V1 ***- D7L923_ARALY); contains Interpro domain(s) IPR005743 DNA gyrase, subunit A "; GO:0005694 NbS00058998g0001.1 protein NbS00013088g0001.1 protein NbS00024117g0001.1 protein NbS00020485g0001.1 protein ; (*GB) gi|297746453|emb|CBI16509.3| (e_value=6e-55) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJD7|COP10_ARATH (e_value=2e-51) Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1;; (*TAIR) AT3G13550.1 (e_value=2e-52) | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating enzyme family protein | chr3:4423569-4424797 REVERSE LENGTH=182;; (*ITAG) Solyc01g005840.2.1 (e_value=2e-69) genomic_reference:SL2.40ch01 gene_region:571846-574849 transcript_region:SL2.40ch01:571846..574849+ go_terms:GO:0042296,GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 E3 (AHRD V1 **** B6T544_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0042296,GO:0004842 NbS00054802g0001.1 protein ; (*ITAG) Solyc01g056620.2.1 (e_value=5e-22) genomic_reference:SL2.40ch01 gene_region:47922648-47930463 transcript_region:SL2.40ch01:47922648..47930463+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- B5BUY7_ARATH); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00025367g0003.1 protein ; (*GB) gi|302143320|emb|CBI21881.3| (e_value=8e-38) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G03780.3 (e_value=3e-38) | Symbols: TPX2 | targeting protein for XKLP2 | chr1:947555-951696 REVERSE LENGTH=790;; (*ITAG) Solyc07g053790.1.1 (e_value=7e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:59533047-59537878 transcript_region:SL2.40ch07:59533047..59537878+ go_terms:GO:0008017 functional_description:"Targeting protein for Xklp2 containing protein expressed (AHRD V1 *--- Q10Q22_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 "; GO:0008017 NbS00004498g0005.1 protein NbS00004498g0007.1 protein ; (*GB) gi|356507196|ref|XP_003522356.1| (e_value=1e-67) PREDICTED: uncharacterized protein LOC100817859 [Glycine max];; (*TAIR) AT1G74830.1 (e_value=4e-61) | Symbols: | Protein of unknown function, DUF593 | chr1:28113469-28115193 REVERSE LENGTH=542;; (*ITAG) Solyc06g071190.2.1 (e_value=3e-122) genomic_reference:SL2.40ch06 gene_region:40162763-40166109 transcript_region:SL2.40ch06:40162763..40166109+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00012441g0002.1 protein NbC23780968g0001.1 protein ; (*GB) gi|255579341|ref|XP_002530515.1| (e_value=5e-32) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FHR3|PP403_ARATH (e_value=1e-21) Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1;; (*TAIR) AT5G37570.1 (e_value=9e-23) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:14924494-14926146 REVERSE LENGTH=550;; (*ITAG) Solyc11g006940.1.1 (e_value=8e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1447046-1451129 transcript_region:SL2.40ch11:1447046..1451129+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MIE0_ARALY); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; NbC23352320g0001.1 protein ; (*GB) gi|296082759|emb|CBI21764.3| (e_value=2e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|O23755|EF2_BETVU (e_value=3e-32) Elongation factor 2 OS=Beta vulgaris PE=2 SV=1;; (*TAIR) AT1G56070.1 (e_value=3e-35) | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843;; (*ITAG) Solyc08g062910.2.1 (e_value=8e-35) genomic_reference:SL2.40ch08 gene_region:49531008-49535044 transcript_region:SL2.40ch08:49531008..49535044- go_terms:GO:0003746 functional_description:"Elongation factor EF-2 (AHRD V1 **** Q9SGT4_ARATH); contains Interpro domain(s) IPR000795 Protein synthesis factor, GTP-binding "; GO:0003746 NbS00000518g0001.1 protein NbS00034992g0001.1 protein NbS00024493g0001.1 protein NbS00005286g0003.1 protein NbS00007058g0001.1 protein NbS00016261g0002.1 protein ; (*GB) gi|338222858|gb|AEI87569.1| (e_value=0.0) cellulose synthase catalytic subunit protein [Nicotiana tabacum];; (*SWP) sp|Q94JQ6|CESA6_ARATH (e_value=0.0) Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2;; (*TAIR) AT5G64740.1 (e_value=0.0) | Symbols: CESA6, IXR2, E112, PRC1 | cellulose synthase 6 | chr5:25881555-25886333 FORWARD LENGTH=1084;; (*ITAG) Solyc04g071650.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00018743g0002.1 protein NbS00018743g0003.1 protein NbC24534853g0001.1 protein ; (*GB) gi|2318137|gb|AAB97152.1| (e_value=4e-71) Mg protoporphyrin IX chelatase [Nicotiana tabacum];; (*SWP) sp|P26162|BCHH_RHOCB (e_value=1e-17) Magnesium-chelatase subunit H OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchH PE=3 SV=2;; (*TAIR) AT5G13630.1 (e_value=1e-67) | Symbols: GUN5, CCH, CHLH, CCH1, ABAR | magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) | chr5:4387567-4392082 REVERSE LENGTH=1381;; (*ITAG) Solyc04g015750.2.1 (e_value=2e-71) genomic_reference:SL2.40ch04 gene_region:6034127-6040044 transcript_region:SL2.40ch04:6034127..6040044- go_terms:GO:0019899 functional_description:"Magnesium chelatase H subunit (AHRD V1 ***- D5KXY0_VITVI); contains Interpro domain(s) IPR011771 Magnesium-chelatase, subunit H "; GO:0019899 NbC23776494g0001.1 protein ; (*GB) gi|225449483|ref|XP_002278500.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera];; (*TAIR) AT3G48670.2 (e_value=2e-21) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647;; (*ITAG) Solyc06g051810.2.1 (e_value=4e-50) genomic_reference:SL2.40ch06 gene_region:31973284-31982663 transcript_region:SL2.40ch06:31973284..31982663- functional_description:"X1 (Fragment) (AHRD V1 **-- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005380 Region of unknown function XS "; NbS00010372g0001.1 protein NbS00010372g0103.1 protein NbS00016273g0003.1 protein NbS00022648g0101.1 protein NbS00001821g0103.1 protein NbS00018810g0001.1 protein NbS00031240g0002.1 protein ; (*ITAG) Solyc03g112960.1.1 (e_value=3e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:57342811-57343638 transcript_region:SL2.40ch03:57342811..57343638+ functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)"; NbS00058082g0001.1 protein NbS00015099g0003.1 protein NbS00025804g0001.1 protein NbS00025804g0003.1 protein NbS00034639g0001.1 protein NbS00008230g0001.1 protein NbS00022365g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=5e-17) RNase H family protein [Solanum demissum]; NbS00058126g0001.1 protein ; (*GB) gi|297819356|ref|XP_002877561.1| (e_value=3e-33) hypothetical protein ARALYDRAFT_905968 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=1e-34) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=7e-36) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=2e-40) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00000867g0109.1 protein NbS00003042g0003.1 protein NbS00021222g0002.1 protein ; (*GB) gi|4206787|gb|AAD11808.1| (e_value=8e-15) syntaxin-related protein Nt-syr1 [Nicotiana tabacum];; (*ITAG) Solyc10g081850.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62136654-62138152 transcript_region:SL2.40ch10:62136654..62138152+ go_terms:GO:0016020 functional_description:"Syntaxin (AHRD V1 ***- Q6X9V9_HORVD); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0016020 NbS00004972g0001.1 protein NbS00018779g0001.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=3e-19) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*ITAG) Solyc00g006090.1.1 (e_value=7e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00000297g0003.1 protein NbS00019372g0004.1 protein NbS00007288g0002.1 protein NbC24525660g0001.1 protein ; (*ITAG) Solyc02g021100.2.1 (e_value=2e-36) genomic_reference:SL2.40ch02 gene_region:12276103-12278400 transcript_region:SL2.40ch02:12276103..12278400- go_terms:GO:0006284,GO:0006281 functional_description:"Methyl-CpG binding domain protein 4 (AHRD V1 *-*- Q3ZBC7_BOVIN); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00002059g0002.1 protein ; (*GB) gi|222617712|gb|EEE53844.1| (e_value=1e-22) hypothetical protein OsJ_00321 [Oryza sativa Japonica Group]; NbS00002059g0004.1 protein NbS00060672g0001.1 protein ; (*GB) gi|255549607|ref|XP_002515855.1| (e_value=2e-50) fk506 binding protein, putative [Ricinus communis];; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=1e-39) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=8e-41) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=4e-53) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00009112g0102.1 protein NbS00013926g0103.1 protein NbS00022962g0001.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=6e-18) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00001965g0003.1 protein ; (*GB) gi|78191406|gb|ABB29924.1| (e_value=8e-28) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=5e-28) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT2G18110.1 (e_value=5e-26) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr2:7872636-7873713 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=3e-30) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00042942g0001.1 protein NbS00005131g0001.1 protein NbS00012528g0104.1 protein NbS00003223g0001.1 protein NbS00012549g0001.1 protein NbS00001723g0002.1 protein NbS00024288g0001.1 protein ; (*ITAG) Solyc06g076840.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44120858-44123081 transcript_region:SL2.40ch06:44120858..44123081- go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **** Q9FIM4_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00037863g0001.1 protein ; (*GB) gi|15241189|ref|NP_197483.1| (e_value=6e-60) armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana];; (*SWP) sp|O00410|IPO5_HUMAN (e_value=6e-21) Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4;; (*TAIR) AT5G19820.1 (e_value=1e-62) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=2e-59) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00032858g0001.1 protein ; (*GB) gi|359476409|ref|XP_003631832.1| (e_value=9e-27) PREDICTED: glutamate receptor 2.8-like [Vitis vinifera];; (*ITAG) Solyc08g006500.2.1 (e_value=3e-29) genomic_reference:SL2.40ch08 gene_region:1096757-1106781 transcript_region:SL2.40ch08:1096757..1106781+ go_terms:GO:0005217,GO:0005515 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9HB97_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217,GO:0005515 NbS00051656g0001.1 protein NbS00019583g0002.1 protein ; (*GB) gi|225424556|ref|XP_002285325.1| (e_value=4e-65) PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Vitis vinifera];; (*SWP) sp|P80470|PSBY_SPIOL (e_value=5e-42) Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2;; (*TAIR) AT1G67740.1 (e_value=2e-32) | Symbols: PSBY, YCF32 | photosystem II BY | chr1:25394429-25394998 REVERSE LENGTH=189;; (*ITAG) Solyc10g077120.1.1 (e_value=1e-86) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59320450-59321013 transcript_region:SL2.40ch10:59320450..59321013+ functional_description:"Photosystem II core complex proteins psbY (AHRD V1 *-*- B6SR26_MAIZE)"; NbS00013259g0002.1 protein NbS00030550g0001.1 protein NbS00017117g0001.1 protein ; (*GB) gi|225436170|ref|XP_002266075.1| (e_value=7e-31) PREDICTED: ATP-dependent zinc metalloprotease FtsH [Vitis vinifera];; (*TAIR) AT4G23940.1 (e_value=1e-31) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=4e-35) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00015476g0004.1 protein NbS00015476g0005.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015476g0007.1 protein ; (*GB) gi|225436930|ref|XP_002275196.1| (e_value=1e-33) PREDICTED: uncharacterized protein LOC100256371 [Vitis vinifera];; (*TAIR) AT1G03160.1 (e_value=7e-27) | Symbols: FZL | FZO-like | chr1:761321-766053 FORWARD LENGTH=912; NbS00038456g0001.1 protein NbS00025779g0006.1 protein NbS00038245g0002.1 protein ; (*GB) gi|224081014|ref|XP_002306264.1| (e_value=6e-163) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|A2BGR3|ERC6L_DANRE (e_value=1e-58) DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1;; (*TAIR) AT5G63950.1 (e_value=4e-149) | Symbols: CHR24 | chromatin remodeling 24 | chr5:25592160-25598405 REVERSE LENGTH=1090;; (*ITAG) Solyc01g068280.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69804247-69818171 transcript_region:SL2.40ch01:69804247..69818171- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00010943g0002.1 protein NbS00024656g0003.1 protein NbS00024656g0005.1 protein ; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=3e-40) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=9e-42) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.1 (e_value=6e-40) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc12g042740.1.1 (e_value=6e-43) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00022525g0103.1 protein NbS00019329g0001.1 protein NbS00014723g0001.1 protein ; (*GB) gi|225425863|ref|XP_002266185.1| (e_value=0.0) PREDICTED: cell division control protein 48 homolog C-like [Vitis vinifera];; (*SWP) sp|Q9SS94|CD48C_ARATH (e_value=6e-180) Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2;; (*TAIR) AT3G01610.1 (e_value=0.0) | Symbols: CDC48C, emb1354 | cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820;; (*ITAG) Solyc01g068330.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00037652g0001.1 protein NbS00006110g0001.1 protein NbS00020757g0001.1 protein NbS00020208g0001.1 protein NbS00026348g0101.1 protein NbS00007863g0003.1 protein NbS00015162g0003.1 protein NbS00031330g0002.1 protein NbS00062249g0002.1 protein ; (*GB) gi|255538746|ref|XP_002510438.1| (e_value=5e-81) NAD dependent epimerase/dehydratase, putative [Ricinus communis];; (*TAIR) AT1G19690.1 (e_value=1e-76) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:6807925-6809562 REVERSE LENGTH=352;; (*ITAG) Solyc02g089890.2.1 (e_value=8e-107) genomic_reference:SL2.40ch02 gene_region:46152628-46161078 transcript_region:SL2.40ch02:46152628..46161078- go_terms:GO:0006508,GO:0044237,GO:0008152 functional_description:"NAD-dependent epimerase/dehydratase (AHRD V1 *-*- D3NY83_AZOS1); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0006508,GO:0044237,GO:0008152 NbS00017946g0001.1 protein NbS00059889g0001.1 protein NbS00016089g0001.1 protein NbS00011916g0002.1 protein NbS00002845g0003.1 protein NbS00002845g0004.1 protein NbS00033089g0001.1 protein ; (*GB) gi|224053689|ref|XP_002297930.1| (e_value=2e-18) predicted protein [Populus trichocarpa]; NbS00017587g0005.1 protein NbS00004547g0004.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=6e-15) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=1e-13) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=5e-17) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbC23550878g0001.1 protein ; (*GB) gi|304854921|emb|CAR63818.1| (e_value=1e-28) phosphoenolpyruvate carboxylase [Scirpoides holoschoenus subsp. thunbergii];; (*SWP) sp|P29196|CAPP_SOLTU (e_value=2e-29) Phosphoenolpyruvate carboxylase OS=Solanum tuberosum GN=PPC1 PE=2 SV=2;; (*TAIR) AT1G53310.3 (e_value=4e-30) | Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 | phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967;; (*ITAG) Solyc12g014250.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5069479-5074778 transcript_region:SL2.40ch12:5069479..5074778- go_terms:GO:0006099,GO:0003824 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- Q9SCB3_SOLLC); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0006099,GO:0003824 NbS00005004g0103.1 protein NbC24214167g0001.1 protein ; (*GB) gi|224131150|ref|XP_002321013.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|P54278|PMS2_HUMAN (e_value=3e-17) Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2;; (*TAIR) AT4G02460.1 (e_value=3e-24) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=9e-31) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00004372g0001.1 protein NbS00003357g0002.1 protein ; (*GB) gi|118486481|gb|ABK95080.1| (e_value=7e-98) unknown [Populus trichocarpa];; (*TAIR) AT5G16520.1 (e_value=5e-88) | Symbols: | unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5394740-5397371 REVERSE LENGTH=608;; (*ITAG) Solyc04g051310.2.1 (e_value=2e-127) genomic_reference:SL2.40ch04 gene_region:49453194-49470655 transcript_region:SL2.40ch04:49453194..49470655+ functional_description:"Genomic DNA chromosome 5 P1 clone MQK4 (AHRD V1 ***- Q9FFD1_ARATH)"; NbS00046162g0002.1 protein NbS00014574g0003.1 protein NbS00023169g0001.1 protein ; (*GB) gi|357514399|ref|XP_003627488.1| (e_value=3e-20) hypothetical protein MTR_8g023650 [Medicago truncatula]; NbS00053485g0001.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=2e-36) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=2e-25) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=2e-26) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00044260g0003.1 protein NbS00030668g0002.1 protein NbS00006578g0201.1 protein NbS00006578g0202.1 protein NbS00010144g0001.1 protein NbC26022933g0001.1 protein ; (*GB) gi|147779323|emb|CAN67856.1| (e_value=2e-81) hypothetical protein VITISV_041256 [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=5e-55) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=4e-56) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048450.2.1 (e_value=2e-94) genomic_reference:SL2.40ch06 gene_region:27551031-27564579 transcript_region:SL2.40ch06:27551031..27564579+ functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 *-*- A2ATQ4_MOUSE)"; NbC23856411g0001.1 protein ; (*GB) gi|297737508|emb|CBI26709.3| (e_value=5e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=3e-35) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=2e-36) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00017296g0007.1 protein NbS00027581g0003.1 protein NbS00027581g0005.1 protein NbS00006967g0103.1 protein NbS00037858g0002.1 protein NbS00054712g0002.1 protein NbS00027195g0003.1 protein NbS00046584g0001.1 protein ; (*GB) gi|225453378|ref|XP_002271102.1| (e_value=2e-19) PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera];; (*TAIR) AT1G02120.1 (e_value=4e-16) | Symbols: VAD1 | GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598;; (*ITAG) Solyc01g090230.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00046584g0002.1 protein NbS00022534g0001.1 protein NbC24752213g0001.1 protein ; (*GB) gi|225455336|ref|XP_002276600.1| (e_value=1e-131) PREDICTED: importin subunit beta-1-like [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=8e-50) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT5G53480.1 (e_value=3e-116) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=2e-137) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00000741g0001.1 protein NbS00021269g0001.1 protein ; (*ITAG) Solyc06g065530.2.1 (e_value=2e-21) genomic_reference:SL2.40ch06 gene_region:37300109-37303848 transcript_region:SL2.40ch06:37300109..37303848- go_terms:GO:0050525 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0050525 NbS00028764g0001.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=5e-56) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=6e-48) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00003146g0101.1 protein NbS00000854g0001.1 protein ; (*GB) gi|2440046|emb|CAA04654.1| (e_value=9e-43) major intrinsic protein PIPC [Craterostigma plantagineum];; (*SWP) sp|Q9ZVX8|PIP28_ARATH (e_value=6e-42) Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1;; (*TAIR) AT2G16850.1 (e_value=5e-43) | Symbols: PIP3B, PIP2;8 | plasma membrane intrinsic protein 2;8 | chr2:7301647-7303180 FORWARD LENGTH=278;; (*ITAG) Solyc02g083510.2.1 (e_value=2e-44) genomic_reference:SL2.40ch02 gene_region:41456730-41458872 transcript_region:SL2.40ch02:41456730..41458872- go_terms:GO:0015250 functional_description:"Aquaporin (AHRD V1 ***- Q9FUC0_BRAOL); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbC24197572g0001.1 protein ; (*GB) gi|224071055|ref|XP_002303349.1| (e_value=3e-41) heavy metal ATPase [Populus trichocarpa];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=1e-36) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=8e-38) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=4e-48) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00042496g0001.1 protein ; (*GB) gi|359491564|ref|XP_002280398.2| (e_value=6e-23) PREDICTED: uncharacterized protein LOC100245819 [Vitis vinifera];; (*TAIR) AT3G48710.1 (e_value=1e-24) | Symbols: | DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462;; (*ITAG) Solyc06g072660.2.1 (e_value=4e-26) genomic_reference:SL2.40ch06 gene_region:41196763-41202118 transcript_region:SL2.40ch06:41196763..41202118- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00018198g0001.1 protein NbS00002958g0002.1 protein NbS00028133g0001.1 protein NbS00027957g0002.1 protein ; (*ITAG) Solyc08g065800.1.1 (e_value=1e-72) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:51314942-51317785 transcript_region:SL2.40ch08:51314942..51317785- functional_description:"Unknown Protein (AHRD V1)"; NbS00027957g0003.1 protein NbC23794743g0001.1 protein ; (*GB) gi|149927127|ref|ZP_01915384.1| (e_value=4e-47) UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105];; (*SWP) sp|A1WC11|MURE_ACISJ (e_value=1e-28) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Acidovorax sp. (strain JS42) GN=murE PE=3 SV=1;; (*ITAG) Solyc08g081170.2.1 (e_value=8e-17) genomic_reference:SL2.40ch08 gene_region:61408719-61413145 transcript_region:SL2.40ch08:61408719..61413145+ go_terms:GO:0005515,GO:0008764 functional_description:"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2 6-diaminopimelate ligase (AHRD V1 *-** D7UXP7_LISGR); contains Interpro domain(s) IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase "; GO:0005515,GO:0008764 NbS00001914g0002.1 protein ; (*GB) gi|224119202|ref|XP_002331254.1| (e_value=1e-154) predicted protein [Populus trichocarpa];; (*TAIR) AT5G38880.1 (e_value=1e-141) | Symbols: | unknown protein; Has 474 Blast hits to 433 proteins in 138 species: Archae - 6; Bacteria - 80; Metazoa - 195; Fungi - 44; Plants - 59; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink). | chr5:15563621-15568804 REVERSE LENGTH=796;; (*ITAG) Solyc03g046590.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:17160415-17182028 transcript_region:SL2.40ch03:17160415..17182028- functional_description:"Genomic DNA chromosome 5 TAC clone K15E6 (AHRD V1 ***- Q9FMB4_ARATH)"; NbS00050533g0001.1 protein NbS00007816g0001.1 protein NbS00010449g0001.1 protein NbS00021123g0001.1 protein NbS00060522g0001.1 protein NbC24869503g0001.1 protein ; (*GB) gi|359473118|ref|XP_002285440.2| (e_value=5e-91) PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera];; (*TAIR) AT1G24560.1 (e_value=1e-79) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). | chr1:8702644-8705640 FORWARD LENGTH=678;; (*ITAG) Solyc05g013780.2.1 (e_value=3e-120) genomic_reference:SL2.40ch05 gene_region:7090546-7096093 transcript_region:SL2.40ch05:7090546..7096093+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001452g0001.1 protein NbS00010877g0001.1 protein NbS00006675g0101.1 protein NbS00003528g0001.1 protein NbS00062263g0001.1 protein NbS00010753g0001.1 protein NbS00009984g0002.1 protein NbS00012462g0001.1 protein ; (*GB) gi|551444|emb|CAA55910.1| (e_value=1e-37) protein MFP-b [Cucumis sativus];; (*SWP) sp|Q39659|MFPA_CUCSA (e_value=6e-39) Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1;; (*TAIR) AT3G06860.1 (e_value=1e-32) | Symbols: MFP2, ATMFP2 | multifunctional protein 2 | chr3:2161926-2166009 FORWARD LENGTH=725;; (*ITAG) Solyc01g066620.2.1 (e_value=1e-39) genomic_reference:SL2.40ch01 gene_region:67151060-67156684 transcript_region:SL2.40ch01:67151060..67156684+ go_terms:GO:0006631,GO:0050662,GO:0008152,GO:0016491 functional_description:"Fatty acid oxidation complex subunit alpha (AHRD V1 ***- D2ZF34_9ENTR); contains Interpro domain(s) IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding "; GO:0006631,GO:0050662,GO:0008152,GO:0016491 NbS00019102g0002.1 protein NbS00041328g0002.1 protein ; (*ITAG) Solyc08g016510.2.1 (e_value=3e-17) genomic_reference:SL2.40ch08 gene_region:7616130-7622289 transcript_region:SL2.40ch08:7616130..7622289- go_terms:GO:0042802,GO:0004175 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- C6SW82_SOYBN); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0042802,GO:0004175 NbS00017335g0002.1 protein ; (*GB) gi|255574255|ref|XP_002528042.1| (e_value=6e-69) Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis];; (*SWP) sp|A4IGM4|DHI1L_XENTR (e_value=1e-14) Hydroxysteroid 11-beta-dehydrogenase 1-like protein OS=Xenopus tropicalis GN=hsd11b1l PE=2 SV=1;; (*TAIR) AT4G10020.1 (e_value=4e-54) | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268363-6270179 FORWARD LENGTH=389;; (*ITAG) Solyc06g064650.2.1 (e_value=3e-71) genomic_reference:SL2.40ch06 gene_region:36682986-36685667 transcript_region:SL2.40ch06:36682986..36685667- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00023787g0001.1 protein NbS00009590g0001.1 protein NbS00033831g0001.1 protein NbS00033511g0001.1 protein NbS00008377g0001.1 protein NbS00008377g0002.1 protein NbS00017737g0001.1 protein NbC25333688g0001.1 protein ; (*GB) gi|371782085|emb|CCE46056.1| (e_value=1e-73) 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Nicotiana tabacum];; (*TAIR) AT5G22620.3 (e_value=7e-63) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=460;; (*ITAG) Solyc06g074510.2.1 (e_value=1e-76) genomic_reference:SL2.40ch06 gene_region:42490467-42495114 transcript_region:SL2.40ch06:42490467..42495114- go_terms:GO:0008152 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 (AHRD V1 *-*- GPMA2_GLOVI); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbS00018888g0102.1 protein NbS00018888g0103.1 protein NbS00018888g0106.1 protein NbS00030096g0001.1 protein NbS00017705g0002.1 protein NbC23921923g0001.1 protein ; (*GB) gi|6635383|gb|AAF19805.1| (e_value=2e-64) EIF4A protein [Brassica oleracea];; (*SWP) sp|Q9CAI7|IF4A3_ARATH (e_value=1e-65) Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1;; (*TAIR) AT1G72730.1 (e_value=1e-66) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:27378040-27379593 REVERSE LENGTH=414;; (*ITAG) Solyc08g062800.2.1 (e_value=1e-66) genomic_reference:SL2.40ch08 gene_region:49300574-49304885 transcript_region:SL2.40ch08:49300574..49304885+ go_terms:GO:0004004,GO:0042802 functional_description:"ATP-dependent RNA helicase eIF4A (AHRD V1 **** A8PG49_COPC7); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004,GO:0042802 NbS00021903g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00016739g0001.1 protein NbS00016739g0002.1 protein NbS00044210g0001.1 protein NbS00000267g0002.1 protein NbS00035637g0001.1 protein ; (*ITAG) Solyc04g007430.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:1103760-1107257 transcript_region:SL2.40ch04:1103760..1107257+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00043434g0001.1 protein NbC23346514g0001.1 protein ; (*SWP) sp|P18616|RPB1_ARATH (e_value=6e-16) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=3;; (*TAIR) AT4G35800.1 (e_value=5e-17) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839;; (*ITAG) Solyc02g083350.2.1 (e_value=4e-17) genomic_reference:SL2.40ch02 gene_region:41367508-41376061 transcript_region:SL2.40ch02:41367508..41376061- go_terms:GO:0031625 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SXC0_RICCO); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0031625 NbS00000831g0003.1 protein NbS00012750g0002.1 protein NbS00006134g0002.1 protein NbS00021791g0005.1 protein NbS00013770g0003.1 protein ; (*GB) gi|297744010|emb|CBI36980.3| (e_value=1e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G62300.2 (e_value=7e-18) | Symbols: DUF7 | DOMAIN OF UNKNOWN FUNCTION 724 7 | chr3:23054247-23057081 FORWARD LENGTH=723;; (*ITAG) Solyc03g121650.2.1 (e_value=9e-60) genomic_reference:SL2.40ch03 gene_region:63798045-63806803 transcript_region:SL2.40ch03:63798045..63806803+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (Fragment) (AHRD V1 *-*- D7LSV9_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbC25866576g0001.1 protein ; (*GB) gi|255552604|ref|XP_002517345.1| (e_value=1e-39) peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis];; (*SWP) sp|Q9SSA5|CYP38_ARATH (e_value=2e-38) Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1;; (*TAIR) AT3G01480.1 (e_value=2e-39) | Symbols: CYP38, ATCYP38 | cyclophilin 38 | chr3:188569-190674 FORWARD LENGTH=437;; (*ITAG) Solyc02g086910.2.1 (e_value=5e-43) genomic_reference:SL2.40ch02 gene_region:44078232-44082017 transcript_region:SL2.40ch02:44078232..44082017- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase cyclophilin-type (AHRD V1 ***- A8IRU6_CHLRE); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0006457 NbC24948066g0001.1 protein ; (*GB) gi|225454079|ref|XP_002266316.1| (e_value=1e-20) PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Vitis vinifera];; (*SWP) sp|Q6DW73|DGDG2_LOTJA (e_value=1e-20) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Lotus japonicus GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=2e-21) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc01g094170.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:77502185-77507721 transcript_region:SL2.40ch01:77502185..77507721- go_terms:GO:0035250,GO:0046480 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250,GO:0046480 NbS00011054g0001.1 protein NbS00006341g0004.1 protein NbS00007510g0001.1 protein NbS00058804g0001.1 protein ; (*GB) gi|77403667|dbj|BAE46412.1| (e_value=1e-16) Pre-mRNA splicing factor [Solanum tuberosum];; (*ITAG) Solyc10g083200.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00058804g0004.1 protein NbC25482049g0001.1 protein ; (*GB) gi|357479989|ref|XP_003610280.1| (e_value=4e-24) hypothetical protein MTR_4g130490 [Medicago truncatula];; (*TAIR) AT4G30710.1 (e_value=4e-22) | Symbols: QWRF8 | Family of unknown function (DUF566) | chr4:14965538-14967881 REVERSE LENGTH=644;; (*ITAG) Solyc07g005860.2.1 (e_value=2e-33) genomic_reference:SL2.40ch07 gene_region:677311-682581 transcript_region:SL2.40ch07:677311..682581- functional_description:"Os02g0794300 protein (Fragment) (AHRD V1 *-*- Q0DWU9_ORYSJ); contains Interpro domain(s) IPR007573 Protein of unknown function DUF566 "; NbS00014201g0002.1 protein NbC24193481g0001.1 protein ; (*GB) gi|296081931|emb|CBI20936.3| (e_value=1e-14) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G25660.1 (e_value=1e-14) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067870.1.1 (e_value=7e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:54128245-54135104 transcript_region:SL2.40ch08:54128245..54135104- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q016Y8_OSTTA)"; NbS00046063g0001.1 protein ; (*GB) gi|359479705|ref|XP_003632339.1| (e_value=4e-59) PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SA60|PPR6_ARATH (e_value=5e-54) Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1;; (*TAIR) AT1G03100.1 (e_value=4e-55) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:744026-746407 REVERSE LENGTH=793;; (*ITAG) Solyc04g008410.1.1 (e_value=4e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023386g0001.1 protein ; (*GB) gi|56694213|gb|AAW22875.1| (e_value=1e-21) bHLH transcriptional regulator [Solanum lycopersicum];; (*ITAG) Solyc06g051550.2.1 (e_value=2e-24) genomic_reference:SL2.40ch06 gene_region:31547113-31549026 transcript_region:SL2.40ch06:31547113..31549026- go_terms:GO:0003700,GO:0042802 functional_description:"Transcription Factor (AHRD V1 *-** Q84LF9_ORYSA); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700,GO:0042802 NbS00034709g0001.1 protein NbS00037176g0001.1 protein ; (*GB) gi|224071441|ref|XP_002303461.1| (e_value=3e-35) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g096080.1.1 (e_value=7e-68) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63491462-63494134 transcript_region:SL2.40ch12:63491462..63494134- go_terms:GO:0008152 functional_description:"UDP-glucosyltransferase family 1 protein (AHRD V1 ***- C6KI43_CITSI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00014761g0001.1 protein NbS00002791g0102.1 protein NbS00020899g0002.1 protein NbS00014423g0103.1 protein NbS00025463g0001.1 protein NbS00025463g0002.1 protein NbS00028044g0002.1 protein NbC24159831g0001.1 protein ; (*ITAG) Solyc11g005130.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:113536-127081 transcript_region:SL2.40ch11:113536..127081- functional_description:"Wound-responsive family protein (AHRD V1 **-- D7KK30_ARALY)"; NbS00054403g0001.1 protein NbS00060009g0001.1 protein ; (*ITAG) Solyc10g047890.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:38413736-38414580 transcript_region:SL2.40ch10:38413736..38414580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- A2Q596_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00032351g0001.1 protein ; (*GB) gi|359486271|ref|XP_002268159.2| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100262534 [Vitis vinifera];; (*ITAG) Solyc01g103110.2.1 (e_value=7e-41) genomic_reference:SL2.40ch01 gene_region:83534654-83541901 transcript_region:SL2.40ch01:83534654..83541901+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007434 Protein of unknown function DUF482 "; NbS00026597g0002.1 protein NbS00033383g0003.1 protein NbS00024247g0002.1 protein ; (*GB) gi|224116734|ref|XP_002331864.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G29850.1 (e_value=1e-22) | Symbols: | double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129;; (*ITAG) Solyc02g071150.2.1 (e_value=3e-29) genomic_reference:SL2.40ch02 gene_region:35217704-35225700 transcript_region:SL2.40ch02:35217704..35225700- go_terms:GO:0005515,GO:0003690 functional_description:"DNA-binding protein (AHRD V1 **** B7R4T4_9EURY); contains Interpro domain(s) IPR002836 DNA-binding TFAR19-related protein "; GO:0005515,GO:0003690 NbS00017884g0002.1 protein NbS00044351g0001.1 protein NbC23886207g0001.1 protein ; (*GB) gi|188509941|gb|ACD56627.1| (e_value=3e-42) putative ABC transporter [Gossypium raimondii];; (*SWP) sp|Q9C8T1|AB1I_ARATH (e_value=3e-43) ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1;; (*TAIR) AT1G63270.1 (e_value=2e-44) | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229;; (*ITAG) Solyc12g010220.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3340222-3340911 transcript_region:SL2.40ch12:3340222..3340911+ go_terms:GO:0030288,GO:0017111,GO:0016887 functional_description:"Cytochrome c biogenesis ATP-binding export protein ccmA-like (AHRD V1 ***- B6U3M9_MAIZE); contains Interpro domain(s) IPR005895 ABC transporter, haem export, CcmA "; GO:0030288,GO:0017111,GO:0016887 NbS00002592g0301.1 protein NbS00012106g0005.1 protein NbS00012106g0006.1 protein NbS00013034g0001.1 protein ; (*ITAG) Solyc02g093660.1.1 (e_value=9e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49008583-49009992 transcript_region:SL2.40ch02:49008583..49009992- functional_description:"Unknown Protein (AHRD V1)"; NbS00017800g0002.1 protein NbC24284457g0001.1 protein NbC24160803g0001.1 protein ; (*GB) gi|2582381|gb|AAC49874.1| (e_value=3e-63) cation-chloride co-transporter [Nicotiana tabacum];; (*SWP) sp|Q2UVJ5|CCC1_ARATH (e_value=1e-62) Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1;; (*TAIR) AT1G30450.2 (e_value=1e-63) | Symbols: CCC1, ATCCC1, HAP5 | cation-chloride co-transporter 1 | chr1:10762905-10769061 FORWARD LENGTH=975;; (*ITAG) Solyc02g070290.2.1 (e_value=4e-66) genomic_reference:SL2.40ch02 gene_region:34640637-34656865 transcript_region:SL2.40ch02:34640637..34656865- go_terms:GO:0015379 functional_description:"Solute carrier family 12 (Potassium/chloride transporters) member 6 (AHRD V1 **** Q0IHX0_XENTR); contains Interpro domain(s) IPR004842 Na/K/Cl co-transporter superfamily "; GO:0015379 NbS00010545g0201.1 protein NbS00011276g0004.1 protein NbS00004321g0101.1 protein NbS00002731g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00002731g0002.1 protein NbS00040874g0002.1 protein NbS00040874g0003.1 protein NbC24157281g0001.1 protein ; (*GB) gi|224085819|ref|XP_002307709.1| (e_value=4e-77) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43870|APS2_ARATH (e_value=3e-75) ATP sulfurylase 2 OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1;; (*TAIR) AT1G19920.1 (e_value=2e-76) | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr1:6914835-6916657 REVERSE LENGTH=476;; (*ITAG) Solyc03g005260.2.1 (e_value=2e-70) genomic_reference:SL2.40ch03 gene_region:148411-153101 transcript_region:SL2.40ch03:148411..153101- go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00038787g0002.1 protein NbS00032270g0001.1 protein NbS00011179g0001.1 protein NbC24397256g0001.1 protein NbS00002540g0101.1 protein NbC23511491g0001.1 protein ; (*GB) gi|224077822|ref|XP_002305423.1| (e_value=2e-29) chromatin remodeling complex subunit [Populus trichocarpa];; (*SWP) sp|Q8VY05|SWI3D_ARATH (e_value=5e-25) SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3;; (*TAIR) AT4G34430.3 (e_value=4e-26) | Symbols: CHB3, ATSWI3D | DNA-binding family protein | chr4:16461069-16464993 FORWARD LENGTH=983;; (*ITAG) Solyc01g109510.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:88199066-88208942 transcript_region:SL2.40ch01:88199066..88208942+ go_terms:GO:0003677,GO:0008270 functional_description:"Subunit of the SWI/SNF chromatin remodeling complex (AHRD V1 *-*- C4QY27_PICPG); contains Interpro domain(s) IPR007526 SWIRM "; GO:0003677,GO:0008270 NbS00017557g0001.1 protein NbS00019284g0001.1 protein NbS00005869g0001.1 protein ; (*GB) gi|224132476|ref|XP_002328289.1| (e_value=3e-60) Cl-channel clc-7 [Populus trichocarpa];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=7e-54) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.2 (e_value=6e-55) | Symbols: CLC-E | chloride channel E | chr4:16836367-16839345 REVERSE LENGTH=749;; (*ITAG) Solyc01g112310.2.1 (e_value=3e-102) genomic_reference:SL2.40ch01 gene_region:90142605-90157819 transcript_region:SL2.40ch01:90142605..90157819+ go_terms:GO:0016020,GO:0055085 functional_description:"H(+)/Cl(-) exchange transporter ClcA (AHRD V1 *-*- C9PHM9_VIBFU); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00005869g0003.1 protein ; (*ITAG) Solyc01g112300.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:90130869-90137919 transcript_region:SL2.40ch01:90130869..90137919+ go_terms:GO:0016020,GO:0055085 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00031815g0004.1 protein ; (*GB) gi|225463627|ref|XP_002271742.1| (e_value=9e-18) PREDICTED: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase-like [Vitis vinifera];; (*ITAG) Solyc04g008880.2.1 (e_value=1e-23) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00005351g0003.1 protein NbS00003440g0004.1 protein NbS00048221g0002.1 protein NbS00032760g0001.1 protein NbS00029625g0001.1 protein NbS00054734g0001.1 protein ; (*GB) gi|224144086|ref|XP_002325181.1| (e_value=4e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q52T38|ZDH22_ARATH (e_value=3e-59) S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1;; (*TAIR) AT5G20350.1 (e_value=2e-60) | Symbols: TIP1 | Ankyrin repeat family protein with DHHC zinc finger domain | chr5:6876772-6881102 FORWARD LENGTH=620;; (*ITAG) Solyc07g007430.2.1 (e_value=8e-69) genomic_reference:SL2.40ch07 gene_region:2145221-2153266 transcript_region:SL2.40ch07:2145221..2153266- go_terms:GO:0016417,GO:0000035 functional_description:"Palmitoyltransferase akr1 (EC 2.3.1.-)(Ankyrin repeat-containing protein akr1) (AHRD V1 *--- C8V079_EMENI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0016417,GO:0000035 NbS00059161g0001.1 protein NbS00047986g0001.1 protein NbS00008524g0001.1 protein NbS00008524g0005.1 protein ; (*GB) gi|147765658|emb|CAN78103.1| (e_value=7e-37) hypothetical protein VITISV_043511 [Vitis vinifera];; (*SWP) sp|Q9FNP2|GDL75_ARATH (e_value=6e-37) GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1;; (*TAIR) AT5G08460.1 (e_value=5e-38) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:2733220-2735351 FORWARD LENGTH=385;; (*ITAG) Solyc11g032050.1.1 (e_value=4e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:20989195-20993340 transcript_region:SL2.40ch11:20989195..20993340+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At1g71691 (AHRD V1 ***- GDL29_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbC24205143g0001.1 protein ; (*GB) gi|295830081|gb|ADG38709.1| (e_value=5e-36) AT4G02500-like protein [Neslia paniculata];; (*SWP) sp|O22775|GT2_ARATH (e_value=8e-36) Putative glycosyltransferase 2 OS=Arabidopsis thaliana GN=GT2 PE=2 SV=1;; (*TAIR) AT4G02500.1 (e_value=6e-37) | Symbols: ATXT2, XXT2, XT2 | UDP-xylosyltransferase 2 | chr4:1101638-1103345 FORWARD LENGTH=461;; (*ITAG) Solyc03g115740.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59419952-59421304 transcript_region:SL2.40ch03:59419952..59421304- go_terms:GO:0033843 functional_description:"Alpha-1 6-xylosyltransferase (AHRD V1 **-* Q5TIN5_VITVI); contains Interpro domain(s) IPR008630 Galactosyl transferase "; GO:0033843 NbS00008632g0003.1 protein NbS00029348g0001.1 protein NbS00029348g0002.1 protein NbS00029348g0004.1 protein NbS00016637g0002.1 protein NbC24517468g0001.1 protein ; (*GB) gi|297737423|emb|CBI26624.3| (e_value=4e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g065500.2.1 (e_value=2e-43) genomic_reference:SL2.40ch02 gene_region:31242390-31258151 transcript_region:SL2.40ch02:31242390..31258151- go_terms:GO:0016021 functional_description:"Nucleolar pre-ribosomal-associated protein 1 (AHRD V1 *--- NPA1P_HUMAN)"; GO:0016021 NbS00060563g0001.1 protein NbS00000630g0002.1 protein NbS00000630g0003.1 protein NbC23963647g0001.1 protein ; (*GB) gi|224060560|ref|XP_002300235.1| (e_value=2e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|O04130|SERA_ARATH (e_value=2e-47) D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2;; (*TAIR) AT4G34200.1 (e_value=2e-50) | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603;; (*ITAG) Solyc03g112070.2.1 (e_value=1e-54) genomic_reference:SL2.40ch03 gene_region:56655923-56660333 transcript_region:SL2.40ch03:56655923..56660333- go_terms:GO:0004617 functional_description:"Phosphoglycerate dehydrogenase (AHRD V1 **** D2D316_GOSHI); contains Interpro domain(s) IPR015508 D-3-phosphogylcerate Dehydrogenase "; GO:0004617 NbS00033639g0002.1 protein NbS00033639g0003.1 protein ; (*GB) gi|255566450|ref|XP_002524210.1| (e_value=2e-43) Thylakoid lumenal 15 kDa protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|O22160|TL15A_ARATH (e_value=1e-40) Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2;; (*TAIR) AT2G44920.1 (e_value=3e-42) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:18524419-18526236 FORWARD LENGTH=210;; (*ITAG) Solyc06g076480.2.1 (e_value=3e-57) genomic_reference:SL2.40ch06 gene_region:43905069-43906883 transcript_region:SL2.40ch06:43905069..43906883- functional_description:"Pentapeptide repeat-containing protein (AHRD V1 *-*- D8G5N8_9CYAN); contains Interpro domain(s) IPR001646 Pentapeptide repeat "; NbS00038766g0001.1 protein ; (*GB) gi|296090248|emb|CBI40067.3| (e_value=2e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4J8D3|TPLAT_ARATH (e_value=2e-39) Protein TPLATE OS=Arabidopsis thaliana GN=TPLATE PE=1 SV=1;; (*TAIR) AT3G01780.1 (e_value=2e-40) | Symbols: TPLATE | ARM repeat superfamily protein | chr3:279171-283399 FORWARD LENGTH=1176;; (*ITAG) Solyc11g068640.1.1 (e_value=7e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00018200g0001.1 protein NbS00002249g0001.1 protein NbS00017475g0001.1 protein ; (*GB) gi|224103009|ref|XP_002312888.1| (e_value=2e-84) predicted protein [Populus trichocarpa];; (*TAIR) AT5G22790.1 (e_value=2e-80) | Symbols: RER1 | reticulata-related 1 | chr5:7599395-7601573 REVERSE LENGTH=433;; (*ITAG) Solyc11g066740.1.1 (e_value=9e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49620493-49625711 transcript_region:SL2.40ch11:49620493..49625711+ functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; NbS00014058g0002.1 protein NbS00058065g0001.1 protein NbS00013020g0001.1 protein ; (*GB) gi|325094793|gb|EGC48103.1| (e_value=6e-14) RNase H domain-containing protein [Ajellomyces capsulatus H88]; NbS00013020g0003.1 protein NbC23243906g0001.1 protein ; (*ITAG) Solyc04g081030.2.1 (e_value=6e-21) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00008760g0205.1 protein NbS00033474g0001.1 protein NbS00006800g0001.1 protein ; (*GB) gi|147864333|emb|CAN83002.1| (e_value=4e-22) hypothetical protein VITISV_003696 [Vitis vinifera]; NbS00010438g0001.1 protein NbS00006459g0001.1 protein NbS00054394g0001.1 protein NbS00023006g0202.1 protein NbC23749903g0001.1 protein ; (*GB) gi|359489421|ref|XP_002273752.2| (e_value=3e-28) PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Vitis vinifera];; (*SWP) sp|Q9LPC6|ARK2_ARATH (e_value=6e-25) Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2;; (*TAIR) AT1G01950.2 (e_value=4e-26) | Symbols: ARK2 | armadillo repeat kinesin 2 | chr1:325473-330403 FORWARD LENGTH=877;; (*ITAG) Solyc01g091480.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbC24272150g0001.1 protein NbS00001533g0104.1 protein NbS00001533g0105.1 protein NbC23471260g0001.1 protein ; (*GB) gi|359492508|ref|XP_002283711.2| (e_value=3e-34) PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Vitis vinifera];; (*SWP) sp|Q8H0T4|UPL2_ARATH (e_value=7e-18) E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3;; (*TAIR) AT1G70320.1 (e_value=5e-19) | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:26488745-26501281 REVERSE LENGTH=3658;; (*ITAG) Solyc04g076620.2.1 (e_value=4e-44) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00010863g0001.1 protein NbS00010420g0001.1 protein NbS00012986g0102.1 protein NbS00020845g0001.1 protein ; (*ITAG) Solyc11g068510.1.1 (e_value=6e-16) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:50296679-50298229 transcript_region:SL2.40ch11:50296679..50298229+ functional_description:"F1F0-ATPase inhibitor protein (AHRD V1 ***- D7LJ04_ARALY)"; NbS00042845g0001.1 protein NbS00043941g0001.1 protein NbC24355542g0001.1 protein ; (*GB) gi|224138824|ref|XP_002326699.1| (e_value=6e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=3e-49) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=2e-50) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=1e-52) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00019005g0001.1 protein NbS00011865g0001.1 protein NbS00023762g0001.1 protein NbS00051483g0001.1 protein NbS00043636g0001.1 protein NbS00043636g0002.1 protein NbS00012354g0001.1 protein NbS00045571g0001.1 protein NbS00018705g0001.1 protein NbS00018705g0002.1 protein NbS00018705g0004.1 protein NbS00018705g0005.1 protein NbS00018705g0006.1 protein NbS00049077g0001.1 protein NbC23967305g0001.1 protein ; (*GB) gi|149926193|ref|ZP_01914455.1| (e_value=8e-58) ABC transporter related protein [Limnobacter sp. MED105];; (*SWP) sp|Q4K681|POTA_PSEF5 (e_value=2e-19) Spermidine/putrescine import ATP-binding protein PotA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=potA PE=3 SV=1; NbS00051045g0002.1 protein ; (*GB) gi|255568159|ref|XP_002525055.1| (e_value=7e-34) cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative [Ricinus communis];; (*TAIR) AT3G55030.1 (e_value=1e-34) | Symbols: PGPS2 | phosphatidylglycerolphosphate synthase 2 | chr3:20396860-20398224 FORWARD LENGTH=233;; (*ITAG) Solyc04g009580.2.1 (e_value=3e-46) genomic_reference:SL2.40ch04 gene_region:2975791-2980078 transcript_region:SL2.40ch04:2975791..2980078+ go_terms:GO:0008444 functional_description:"CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (AHRD V1 *-** PGSA_SODGM); contains Interpro domain(s) IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase "; GO:0008444 NbS00001780g0005.1 protein NbS00014692g0003.1 protein NbS00014692g0004.1 protein NbS00005919g0002.1 protein NbS00007725g0005.1 protein NbC24189148g0001.1 protein ; (*GB) gi|30013679|gb|AAP03882.1| (e_value=1e-72) Avr9/Cf-9 rapidly elicited protein 276 [Nicotiana tabacum];; (*SWP) sp|Q9C7R6|PUB17_ARATH (e_value=4e-44) U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1;; (*TAIR) AT1G29340.1 (e_value=3e-45) | Symbols: PUB17, ATPUB17 | plant U-box 17 | chr1:10264412-10266601 FORWARD LENGTH=729;; (*ITAG) Solyc02g072080.1.1 (e_value=8e-67) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:35929890-35932064 transcript_region:SL2.40ch02:35929890..35932064- go_terms:GO:0005515,GO:0004842 functional_description:"U-box domain-containing protein 17 (AHRD V1 **-- PUB17_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515,GO:0004842 NbS00009519g0003.1 protein ; (*ITAG) Solyc09g092170.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:66669414-66670757 transcript_region:SL2.40ch09:66669414..66670757- go_terms:GO:0030599 functional_description:"Seed specific protein Bn15D12A (Fragment) (AHRD V1 ***- Q7XYW4_BRANA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00015211g0001.1 protein NbS00003111g0001.1 protein ; (*GB) gi|225438670|ref|XP_002282018.1| (e_value=4e-12) PREDICTED: uncharacterized protein LOC100244129 [Vitis vinifera];; (*ITAG) Solyc02g090650.2.1 (e_value=1e-29) genomic_reference:SL2.40ch02 gene_region:46767099-46775768 transcript_region:SL2.40ch02:46767099..46775768- functional_description:"Os10g0382300 protein (Fragment) (AHRD V1 ***- Q0IY13_ORYSJ); contains Interpro domain(s) IPR006595 CTLH, C-terminal to LisH motif "; NbC25459557g0001.1 protein ; (*ITAG) Solyc01g088720.2.1 (e_value=4e-15) genomic_reference:SL2.40ch01 gene_region:75240886-75259743 transcript_region:SL2.40ch01:75240886..75259743+ go_terms:GO:0008134,GO:0003709 functional_description:"Transcription initiation factor IIB (AHRD V1 *-** B6K3D6_SCHJY); contains Interpro domain(s) IPR000812 Transcription factor TFIIB related "; GO:0008134,GO:0003709 NbS00026095g0001.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=4e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=7e-28) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00047240g0001.1 protein NbS00021573g0001.1 protein NbS00004963g0001.1 protein NbS00004963g0002.1 protein NbS00004963g0003.1 protein NbS00015816g0003.1 protein NbS00018226g0003.1 protein ; (*GB) gi|225459429|ref|XP_002284321.1| (e_value=3e-20) PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Vitis vinifera]; NbS00020316g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbC26067722g0001.1 protein NbS00017832g0001.1 protein NbS00010468g0001.1 protein NbS00039336g0004.1 protein NbS00002177g0002.1 protein ; (*GB) gi|297850562|ref|XP_002893162.1| (e_value=3e-27) mutase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O49290|CPPM_ARATH (e_value=7e-28) Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=1 SV=2;; (*TAIR) AT1G21440.1 (e_value=1e-29) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr1:7502325-7504103 REVERSE LENGTH=336; NbC23963283g0001.1 protein ; (*GB) gi|255587116|ref|XP_002534143.1| (e_value=1e-34) protein binding protein, putative [Ricinus communis];; (*TAIR) AT5G60710.1 (e_value=6e-25) | Symbols: | Zinc finger (C3HC4-type RING finger) family protein | chr5:24410953-24414849 REVERSE LENGTH=704;; (*ITAG) Solyc05g056140.2.1 (e_value=2e-34) genomic_reference:SL2.40ch05 gene_region:64680558-64685370 transcript_region:SL2.40ch05:64680558..64685370- go_terms:GO:0004842 functional_description:"Inter-alpha-trypsin inhibitor heavy chain H3 (AHRD V1 *--- ITIH3_MESAU); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0004842 NbS00013710g0001.1 protein NbC24200293g0001.1 protein ; (*GB) gi|359486497|ref|XP_002272442.2| (e_value=3e-25) PREDICTED: anaphase-promoting complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=2e-17) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=2e-18) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048450.2.1 (e_value=8e-41) genomic_reference:SL2.40ch06 gene_region:27551031-27564579 transcript_region:SL2.40ch06:27551031..27564579+ functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 *-*- A2ATQ4_MOUSE)"; NbS00011494g0001.1 protein NbS00024653g0002.1 protein ; (*GB) gi|359481061|ref|XP_003632563.1| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100254761 isoform 3 [Vitis vinifera];; (*ITAG) Solyc11g006410.1.1 (e_value=1e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1122705-1126488 transcript_region:SL2.40ch11:1122705..1126488+ functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC4_ARATH)"; NbS00000851g0001.1 protein NbS00000810g0004.1 protein NbS00034642g0004.1 protein ; (*GB) gi|166165119|gb|ABY83921.1| (e_value=3e-37) cytochrome oxidase subunit 1 [Petrea volubilis];; (*SWP) sp|P24794|COX1_BETVU (e_value=1e-34) Cytochrome c oxidase subunit 1 OS=Beta vulgaris GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=5e-35) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc11g063610.1.1 (e_value=6e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46724212-46725705 transcript_region:SL2.40ch11:46724212..46725705+ go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00007471g0002.1 protein NbS00008506g0001.1 protein NbC25355827g0001.1 protein NbS00003136g0002.1 protein ; (*GB) gi|359486485|ref|XP_003633450.1| (e_value=1e-38) PREDICTED: uncharacterized protein LOC100853686 [Vitis vinifera];; (*TAIR) AT5G05330.1 (e_value=3e-24) | Symbols: | HMG-box (high mobility group) DNA-binding family protein | chr5:1577289-1578750 REVERSE LENGTH=220;; (*ITAG) Solyc06g050320.2.1 (e_value=2e-78) genomic_reference:SL2.40ch06 gene_region:29431334-29434191 transcript_region:SL2.40ch06:29431334..29434191- go_terms:GO:0003700 functional_description:"HMG type nucleosome/chromatin assembly factor (AHRD V1 **-* Q6Z1Z2_ORYSJ); contains Interpro domain(s) IPR009071 High mobility group, superfamily "; GO:0003700 NbS00003136g0004.1 protein NbS00004170g0001.1 protein ; (*GB) gi|31075168|emb|CAD32549.1| (e_value=2e-28) dicarboxylate transporter [Alnus glutinosa];; (*SWP) sp|Q9SZY4|PTR27_ARATH (e_value=7e-28) Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1;; (*TAIR) AT2G26690.1 (e_value=5e-29) | Symbols: | Major facilitator superfamily protein | chr2:11347347-11350916 REVERSE LENGTH=577;; (*ITAG) Solyc01g096880.2.1 (e_value=1e-38) genomic_reference:SL2.40ch01 gene_region:79634561-79638218 transcript_region:SL2.40ch01:79634561..79638218- go_terms:GO:0042936 functional_description:"Nitrate transporter (AHRD V1 **** Q9SZY4_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00001595g0002.1 protein NbC25047561g0001.1 protein ; (*GB) gi|147788261|emb|CAN65296.1| (e_value=7e-40) hypothetical protein VITISV_042325 [Vitis vinifera];; (*SWP) sp|Q9Z1T6|FYV1_MOUSE (e_value=4e-16) 1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus GN=Pikfyve PE=1 SV=3;; (*TAIR) AT1G34260.1 (e_value=3e-32) | Symbols: FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A | chr1:12485967-12491799 FORWARD LENGTH=1456;; (*ITAG) Solyc06g065540.2.1 (e_value=6e-57) genomic_reference:SL2.40ch06 gene_region:37308987-37316738 transcript_region:SL2.40ch06:37308987..37316738- go_terms:GO:0035091,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **** D7KK53_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0035091,GO:0016308 NbS00001971g0001.1 protein NbS00001971g0002.1 protein NbS00001971g0003.1 protein NbS00036587g0001.1 protein ; (*GB) gi|359479583|ref|XP_002275680.2| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q6NQ83|PP247_ARATH (e_value=7e-112) Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1;; (*TAIR) AT3G22470.1 (e_value=5e-113) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:7966066-7967925 REVERSE LENGTH=619;; (*ITAG) Solyc06g007740.1.1 (e_value=5e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1710555-1712327 transcript_region:SL2.40ch06:1710555..1712327+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00014735g0005.1 protein NbS00025223g0004.1 protein ; (*GB) gi|51490663|emb|CAG26902.1| (e_value=4e-28) ALY protein [Nicotiana benthamiana];; (*ITAG) Solyc10g086400.1.1 (e_value=5e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00008175g0001.1 protein NbS00025316g0001.1 protein NbS00019070g0005.1 protein ; (*GB) gi|297844474|ref|XP_002890118.1| (e_value=2e-19) hypothetical protein ARALYDRAFT_471762 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LMR4|FBK4_ARATH (e_value=1e-13) Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana GN=At1g15680 PE=4 SV=1;; (*TAIR) AT1G15680.1 (e_value=9e-15) | Symbols: | F-box family protein | chr1:5393407-5394639 FORWARD LENGTH=410; NbS00002324g0103.1 protein NbS00022696g0002.1 protein NbS00025012g0001.1 protein ; (*GB) gi|76573333|gb|ABA46771.1| (e_value=1e-41) unknown [Solanum tuberosum];; (*SWP) sp|Q9M354|AGD6_ARATH (e_value=3e-24) Probable ADP-ribosylation factor GTPase-activating protein AGD6 OS=Arabidopsis thaliana GN=AGD6 PE=1 SV=1;; (*TAIR) AT3G53710.2 (e_value=2e-25) | Symbols: AGD6 | ARF-GAP domain 6 | chr3:19903730-19905419 REVERSE LENGTH=459;; (*ITAG) Solyc10g084690.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63448012-63451193 transcript_region:SL2.40ch10:63448012..63451193+ go_terms:GO:0032312 functional_description:"ADP-ribosylation factor GTPase activating protein 1 (AHRD V1 *--- Q0V8A7_BOVIN); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312 NbC24288391g0001.1 protein ; (*GB) gi|357442309|ref|XP_003591432.1| (e_value=4e-34) hypothetical protein MTR_1g087380 [Medicago truncatula];; (*SWP) sp|Q9LXX6|EXOC6_ARATH (e_value=1e-33) Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=2 SV=2;; (*TAIR) AT3G56640.1 (e_value=7e-35) | Symbols: SEC15A | exocyst complex component sec15A | chr3:20981964-20984336 FORWARD LENGTH=790;; (*ITAG) Solyc12g096290.1.1 (e_value=6e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63618192-63620489 transcript_region:SL2.40ch12:63618192..63620489+ go_terms:GO:0005975,GO:0000145 functional_description:"Exocyst complex component 6 (AHRD V1 ***- B0WEG6_CULQU); contains Interpro domain(s) IPR007225 Exocyst complex subunit Sec15-like "; GO:0005975,GO:0000145 NbS00037378g0002.1 protein NbC23511915g0001.1 protein ; (*GB) gi|359480217|ref|XP_003632418.1| (e_value=9e-23) PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=2e-23) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=2e-24) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc01g068100.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00004543g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-42) hypothetical protein [Nicotiana tabacum]; NbS00001659g0001.1 protein ; (*GB) gi|255563030|ref|XP_002522519.1| (e_value=2e-47) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q9FJ40|GDL86_ARATH (e_value=3e-44) GDSL esterase/lipase At5g45960 OS=Arabidopsis thaliana GN=At5g45960 PE=2 SV=1;; (*TAIR) AT5G45960.1 (e_value=2e-45) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:18637174-18640319 REVERSE LENGTH=375;; (*ITAG) Solyc02g077340.1.1 (e_value=1e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36884388-36887044 transcript_region:SL2.40ch02:36884388..36887044- go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g45960 (AHRD V1 ***- GDL86_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00000797g0003.1 protein ; (*GB) gi|255570175|ref|XP_002526048.1| (e_value=4e-43) protein with unknown function [Ricinus communis];; (*SWP) sp|Q38922|RAB1B_ARATH (e_value=7e-42) Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1;; (*TAIR) AT4G35860.2 (e_value=1e-43) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988587 REVERSE LENGTH=165;; (*ITAG) Solyc02g093530.2.1 (e_value=6e-51) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00000065g0001.1 protein NbS00015128g0001.1 protein ; (*GB) gi|225446819|ref|XP_002279329.1| (e_value=3e-98) PREDICTED: conserved oligomeric Golgi complex subunit 5 [Vitis vinifera];; (*SWP) sp|Q9UP83|COG5_HUMAN (e_value=1e-32) Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3;; (*TAIR) AT1G67930.1 (e_value=2e-92) | Symbols: | Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832;; (*ITAG) Solyc10g007720.2.1 (e_value=2e-146) genomic_reference:SL2.40ch10 gene_region:1967084-1974413 transcript_region:SL2.40ch10:1967084..1974413- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 5 (AHRD V1 ***- COG5_HUMAN); contains Interpro domain(s) IPR019465 Conserved oligomeric Golgi complex, subunit 5 "; GO:0005515 NbS00015128g0003.1 protein NbS00001237g0001.1 protein NbS00002180g0101.1 protein NbS00004945g0002.1 protein NbS00012449g0002.1 protein NbS00012449g0003.1 protein NbS00007786g0001.1 protein NbC25763594g0001.1 protein ; (*GB) gi|359478834|ref|XP_002279055.2| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera];; (*ITAG) Solyc10g084700.1.1 (e_value=7e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63454624-63456888 transcript_region:SL2.40ch10:63454624..63456888+ go_terms:GO:0005840 functional_description:"30S ribosomal protein S18 family (AHRD V1 ***- D7KH00_ARALY); contains Interpro domain(s) IPR001648 Ribosomal protein S18 "; GO:0005840 NbS00009070g0001.1 protein NbS00013264g0001.1 protein NbC23200834g0001.1 protein ; (*GB) gi|149926618|ref|ZP_01914878.1| (e_value=8e-36) glutamate synthase small subunit [Limnobacter sp. MED105];; (*ITAG) Solyc03g083440.2.1 (e_value=6e-14) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00008257g0103.1 protein NbS00008257g0402.1 protein NbS00008257g0404.1 protein NbS00040411g0001.1 protein NbS00009197g0202.1 protein NbS00041973g0001.1 protein ; (*ITAG) Solyc06g051730.2.1 (e_value=1e-15) genomic_reference:SL2.40ch06 gene_region:31765486-31778043 transcript_region:SL2.40ch06:31765486..31778043- go_terms:GO:0004672,GO:0005215 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-* ADCK1_MOUSE); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672,GO:0005215 NbS00030247g0003.1 protein NbS00006855g0001.1 protein NbS00033951g0001.1 protein NbS00017997g0204.1 protein NbS00021462g0001.1 protein ; (*GB) gi|255571151|ref|XP_002526526.1| (e_value=1e-30) carrier, putative [Ricinus communis];; (*SWP) sp|Q9LVM5|TTHL_ARATH (e_value=1e-17) Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1;; (*TAIR) AT5G58220.2 (e_value=6e-19) | Symbols: TTL | transthyretin-like protein | chr5:23554546-23555861 REVERSE LENGTH=286;; (*ITAG) Solyc01g080940.2.1 (e_value=4e-45) genomic_reference:SL2.40ch01 gene_region:72789735-72793615 transcript_region:SL2.40ch01:72789735..72793615+ go_terms:GO:0005515 functional_description:"5-hydroxyisourate hydrolase (AHRD V1 ***- B9SKJ6_RICCO); contains Interpro domain(s) IPR014306 Hydroxyisourate hydrolase "; GO:0005515 NbS00060397g0001.1 protein NbS00002635g0002.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=3e-12) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc09g059390.2.1 (e_value=3e-36) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00032913g0002.1 protein ; (*GB) gi|359473412|ref|XP_002266599.2| (e_value=7e-16) PREDICTED: uncharacterized protein LOC100255243 [Vitis vinifera];; (*TAIR) AT1G24095.1 (e_value=4e-16) | Symbols: | Putative thiol-disulphide oxidoreductase DCC | chr1:8523345-8524690 FORWARD LENGTH=213;; (*ITAG) Solyc05g006100.2.1 (e_value=9e-17) genomic_reference:SL2.40ch05 gene_region:824706-827085 transcript_region:SL2.40ch05:824706..827085+ functional_description:"YuxK (AHRD V1 *--- A3U9R9_CROAH); contains Interpro domain(s) IPR007263 Putative thiol-disulphide oxidoreductase DCC "; NbS00024261g0003.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=4e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00026885g0001.1 protein NbS00007531g0101.1 protein NbC24997187g0001.1 protein ; (*GB) gi|225427685|ref|XP_002273814.1| (e_value=4e-100) PREDICTED: DNA repair and recombination protein RAD54-like [Vitis vinifera];; (*SWP) sp|Q9GQN5|ATRX_DROME (e_value=1e-15) Transcriptional regulator ATRX homolog OS=Drosophila melanogaster GN=XNP PE=1 SV=2;; (*TAIR) AT2G16390.1 (e_value=7e-97) | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing protein / helicase domain-containing protein | chr2:7097638-7101182 FORWARD LENGTH=888;; (*ITAG) Solyc01g109970.2.1 (e_value=6e-135) genomic_reference:SL2.40ch01 gene_region:88549263-88557040 transcript_region:SL2.40ch01:88549263..88557040+ go_terms:GO:0005524 functional_description:"DNA repair protein (AHRD V1 *--- Q2UQK2_ASPOR); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00013364g0002.1 protein ; (*GB) gi|255544510|ref|XP_002513316.1| (e_value=5e-40) hypothetical protein RCOM_1573710 [Ricinus communis];; (*TAIR) AT3G20270.3 (e_value=2e-27) | Symbols: | lipid-binding serum glycoprotein family protein | chr3:7067779-7070866 FORWARD LENGTH=722; NbS00001531g0002.1 protein ; (*ITAG) Solyc01g098460.2.1 (e_value=8e-30) genomic_reference:SL2.40ch01 gene_region:80738870-80744394 transcript_region:SL2.40ch01:80738870..80744394+ go_terms:GO:0008168 functional_description:"Ribosomal RNA large subunit methyltransferase F (AHRD V1 ***- D0KHS1_PECWW); contains Interpro domain(s) IPR017182 S-adenosyl-L-methionine dependent methyltransferase, Mett10D, predicted "; GO:0008168 NbC23550876g0001.1 protein ; (*GB) gi|304854921|emb|CAR63818.1| (e_value=5e-28) phosphoenolpyruvate carboxylase [Scirpoides holoschoenus subsp. thunbergii];; (*SWP) sp|P29196|CAPP_SOLTU (e_value=6e-29) Phosphoenolpyruvate carboxylase OS=Solanum tuberosum GN=PPC1 PE=2 SV=2;; (*TAIR) AT1G53310.3 (e_value=2e-29) | Symbols: ATPPC1, PEPC1, ATPEPC1, PPC1 | phosphoenolpyruvate carboxylase 1 | chr1:19884261-19888070 REVERSE LENGTH=967;; (*ITAG) Solyc12g014250.1.1 (e_value=4e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5069479-5074778 transcript_region:SL2.40ch12:5069479..5074778- go_terms:GO:0006099,GO:0003824 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- Q9SCB3_SOLLC); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0006099,GO:0003824 NbS00049933g0001.1 protein ; (*GB) gi|255554481|ref|XP_002518279.1| (e_value=3e-26) hypothetical protein RCOM_0815310 [Ricinus communis];; (*TAIR) AT2G30400.1 (e_value=1e-19) | Symbols: ATOFP2, OFP2 | ovate family protein 2 | chr2:12956592-12957554 FORWARD LENGTH=320;; (*ITAG) Solyc06g082460.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44548662-44549717 transcript_region:SL2.40ch06:44548662..44549717+ functional_description:"Plant-specific domain TIGR01568 family protein (AHRD V1 *--- B6U561_MAIZE); contains Interpro domain(s) IPR006458 Protein of unknown function DUF623, plant "; NbS00014402g0001.1 protein NbS00008948g0002.1 protein NbS00054476g0001.1 protein ; (*GB) gi|62321648|dbj|BAD95263.1| (e_value=5e-36) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT2G38020.1 (e_value=4e-37) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910098-15914190 REVERSE LENGTH=858;; (*ITAG) Solyc07g056220.2.1 (e_value=2e-37) genomic_reference:SL2.40ch07 gene_region:61387158-61398184 transcript_region:SL2.40ch07:61387158..61398184- go_terms:GO:0051015 functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NFB5_AJECG); contains Interpro domain(s) IPR016534 Vacuolar protein sorting-associated protein 16 "; GO:0051015 NbS00042310g0002.1 protein NbS00007134g0004.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=9e-16) predicted protein [Populus trichocarpa]; NbS00026197g0001.1 protein NbS00006636g0001.1 protein NbS00002352g0002.1 protein NbS00002352g0003.1 protein ; (*GB) gi|41176619|gb|AAR99599.1| (e_value=3e-18) 4-alpha-glucanotransferase [Solanum tuberosum];; (*ITAG) Solyc02g020980.2.1 (e_value=1e-23) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00000877g0003.1 protein NbS00008872g0001.1 protein ; (*ITAG) Solyc09g011950.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:5229051-5233625 transcript_region:SL2.40ch09:5229051..5233625- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00015672g0002.1 protein ; (*GB) gi|78191406|gb|ABB29924.1| (e_value=5e-32) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=3e-32) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT2G18110.1 (e_value=5e-30) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr2:7872636-7873713 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00010887g0001.1 protein ; (*GB) gi|363807714|ref|NP_001242680.1| (e_value=8e-36) uncharacterized protein LOC100788677 [Glycine max];; (*TAIR) AT5G53540.1 (e_value=3e-33) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403;; (*ITAG) Solyc06g053160.2.1 (e_value=8e-42) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00036379g0003.1 protein NbS00021429g0003.1 protein NbS00020130g0001.1 protein NbC24010665g0001.1 protein ; (*GB) gi|147766845|emb|CAN76416.1| (e_value=6e-29) hypothetical protein VITISV_029037 [Vitis vinifera];; (*SWP) sp|Q9C5X9|HAC1_ARATH (e_value=9e-28) Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 PE=1 SV=2;; (*TAIR) AT1G79000.2 (e_value=7e-29) | Symbols: HAC1 | histone acetyltransferase of the CBP family 1 | chr1:29716639-29723984 REVERSE LENGTH=1741;; (*ITAG) Solyc01g008120.2.1 (e_value=8e-33) genomic_reference:SL2.40ch01 gene_region:2245997-2262660 transcript_region:SL2.40ch01:2245997..2262660- go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00031881g0003.1 protein NbS00011705g0001.1 protein ; (*GB) gi|357449307|ref|XP_003594930.1| (e_value=3e-87) Vacuolar sorting protein 4b [Medicago truncatula];; (*SWP) sp|Q54PT2|VPS4_DICDI (e_value=2e-12) Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1;; (*TAIR) AT2G27600.1 (e_value=3e-41) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=2e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00001440g0005.1 protein NbS00015397g0002.1 protein ; (*GB) gi|224126907|ref|XP_002319956.1| (e_value=3e-91) predicted protein [Populus trichocarpa];; (*TAIR) AT5G58450.1 (e_value=2e-77) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057920.2.1 (e_value=4e-114) genomic_reference:SL2.40ch09 gene_region:47851951-47865894 transcript_region:SL2.40ch09:47851951..47865894+ functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 *--- NAA25_RAT); contains Interpro domain(s) IPR019183 N-acetyltransferase B complex, non-catalytic subunit "; NbS00001451g0002.1 protein ; (*GB) gi|356543329|ref|XP_003540114.1| (e_value=4e-31) PREDICTED: UPF0133 protein Synpcc7942_0464-like [Glycine max];; (*TAIR) AT2G24020.2 (e_value=2e-32) | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr2:10217869-10219269 REVERSE LENGTH=180;; (*ITAG) Solyc08g006780.2.1 (e_value=5e-33) genomic_reference:SL2.40ch08 gene_region:1340597-1346293 transcript_region:SL2.40ch08:1340597..1346293+ functional_description:"Complex interacting protein 9 (AHRD V1 ***- Q8LDX3_ARATH); contains Interpro domain(s) IPR004401 Uncharacterised protein family UPF0133 "; NbS00002586g0001.1 protein NbS00041473g0003.1 protein NbS00029877g0001.1 protein NbC23414213g0001.1 protein ; (*GB) gi|359495585|ref|XP_002265337.2| (e_value=3e-29) PREDICTED: phospholipid-transporting ATPase 3-like [Vitis vinifera];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=5e-29) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=4e-30) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc05g006640.2.1 (e_value=3e-32) genomic_reference:SL2.40ch05 gene_region:1293312-1308931 transcript_region:SL2.40ch05:1293312..1308931- go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1GDL1_PARBD); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00022690g0001.1 protein NbC24204719g0001.1 protein ; (*GB) gi|150171033|emb|CAN88916.1| (e_value=1e-57) glutamyl tRNA Reductase [Nicotiana tabacum];; (*SWP) sp|P93111|HEM11_CUCSA (e_value=3e-56) Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1;; (*TAIR) AT1G09940.1 (e_value=6e-55) | Symbols: HEMA2 | Glutamyl-tRNA reductase family protein | chr1:3237224-3239262 REVERSE LENGTH=530;; (*ITAG) Solyc04g076870.2.1 (e_value=5e-57) genomic_reference:SL2.40ch04 gene_region:59389700-59393248 transcript_region:SL2.40ch04:59389700..59393248- go_terms:GO:0004781,GO:0008883 functional_description:"Glutamyl-tRNA reductase (AHRD V1 **** A5BZY3_VITVI); contains Interpro domain(s) IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase "; GO:0004781,GO:0008883 NbS00034628g0101.1 protein NbS00034628g0102.1 protein NbS00046436g0001.1 protein NbS00015253g0001.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=4e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=5e-24) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00035480g0001.1 protein ; (*GB) gi|147769957|emb|CAN70049.1| (e_value=0.0) hypothetical protein VITISV_013371 [Vitis vinifera];; (*SWP) sp|Q9FMA1|PP433_ARATH (e_value=9e-114) Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1;; (*TAIR) AT5G56310.1 (e_value=7e-115) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:22802322-22803914 FORWARD LENGTH=530;; (*ITAG) Solyc12g096510.1.1 (e_value=1e-112) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00055423g0001.1 protein ; (*GB) gi|115450545|ref|NP_001048873.1| (e_value=3e-21) Os03g0133100 [Oryza sativa Japonica Group];; (*TAIR) AT5G42290.1 (e_value=1e-20) | Symbols: | transcription activator-related | chr5:16911700-16912032 FORWARD LENGTH=110; NbS00046408g0001.1 protein NbS00020488g0003.1 protein NbS00042984g0003.1 protein ; (*ITAG) Solyc03g115520.2.1 (e_value=5e-42) genomic_reference:SL2.40ch03 gene_region:59243175-59258018 transcript_region:SL2.40ch03:59243175..59258018- go_terms:GO:0004519,GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--- CHD1L_BOVIN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004519,GO:0005524 NbS00002808g0005.1 protein NbS00060773g0002.1 protein NbS00019424g0001.1 protein ; (*ITAG) Solyc08g080020.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60544916-60545230 transcript_region:SL2.40ch08:60544916..60545230+ go_terms:GO:0009611 functional_description:"Serine protease inhibitor potato inhibitor I-type family protein (AHRD V1 ***- D7LT19_ARALY); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00013170g0004.1 protein NbS00044895g0001.1 protein NbS00013368g0002.1 protein ; (*GB) gi|359479309|ref|XP_003632255.1| (e_value=7e-41) PREDICTED: uncharacterized protein LOC100242629 [Vitis vinifera];; (*TAIR) AT5G12290.1 (e_value=2e-31) | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974374-3978066 REVERSE LENGTH=602;; (*ITAG) Solyc01g009030.2.1 (e_value=9e-61) genomic_reference:SL2.40ch01 gene_region:3025820-3038891 transcript_region:SL2.40ch01:3025820..3038891+ functional_description:"Nuclear control of ATPase protein (AHRD V1 *--- C9SK53_VERA1); contains Interpro domain(s) IPR013946 Nuclear control of ATP synthase 2 "; NbC23364415g0001.1 protein ; (*ITAG) Solyc06g054030.2.1 (e_value=1e-15) genomic_reference:SL2.40ch06 gene_region:33389461-33390372 transcript_region:SL2.40ch06:33389461..33390372- functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00016938g0001.1 protein NbS00056458g0003.1 protein ; (*ITAG) Solyc07g064370.1.1 (e_value=7e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63781077-63782927 transcript_region:SL2.40ch07:63781077..63782927+ functional_description:"Aminotransferase-like protein (AHRD V1 *-*- Q68UQ8_ORYSJ); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; NbS00031744g0002.1 protein ; (*GB) gi|224104953|ref|XP_002313632.1| (e_value=1e-58) predicted protein [Populus trichocarpa];; (*TAIR) AT5G20950.2 (e_value=3e-46) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc01g009240.2.1 (e_value=1e-60) genomic_reference:SL2.40ch01 gene_region:3269096-3273535 transcript_region:SL2.40ch01:3269096..3273535+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00027850g0002.1 protein NbS00018956g0003.1 protein NbS00034243g0001.1 protein ; (*GB) gi|47933777|gb|AAT39459.1| (e_value=2e-48) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q43116|PDI_RICCO (e_value=1e-48) Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=1e-43) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g056400.2.1 (e_value=7e-52) genomic_reference:SL2.40ch05 gene_region:64861547-64864585 transcript_region:SL2.40ch05:64861547..64864585+ go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00037916g0004.1 protein NbS00038653g0001.1 protein ; (*GB) gi|10177111|dbj|BAB10401.1| (e_value=3e-15) unnamed protein product [Arabidopsis thaliana];; (*TAIR) AT5G65960.1 (e_value=9e-18) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbC24340124g0001.1 protein ; (*ITAG) Solyc04g050150.2.1 (e_value=3e-43) genomic_reference:SL2.40ch04 gene_region:44804160-44840698 transcript_region:SL2.40ch04:44804160..44840698- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 7 (AHRD V1 *--- CHD7_CHICK); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00054200g0001.1 protein ; (*GB) gi|255537809|ref|XP_002509971.1| (e_value=2e-29) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G64430.2 (e_value=3e-28) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:23933541-23936336 FORWARD LENGTH=559;; (*ITAG) Solyc12g055940.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47287938-47294874 transcript_region:SL2.40ch12:47287938..47294874- functional_description:"Unknown Protein (AHRD V1)"; NbS00000377g0203.1 protein NbC24390435g0001.1 protein ; (*GB) gi|7673359|gb|AAF66825.1| (e_value=2e-26) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=2e-15) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT1G49760.2 (e_value=9e-22) | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671;; (*ITAG) Solyc12g088720.1.1 (e_value=5e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00021674g0002.1 protein ; (*GB) gi|224139276|ref|XP_002323033.1| (e_value=8e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5W6M3|CSPLG_ORYSJ (e_value=3e-26) CASP-like protein Os05g0344400 OS=Oryza sativa subsp. japonica GN=Os05g0344400 PE=2 SV=1;; (*TAIR) AT2G38480.1 (e_value=2e-26) | Symbols: | Uncharacterised protein family (UPF0497) | chr2:16110960-16111694 REVERSE LENGTH=188;; (*ITAG) Solyc10g076300.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58555375-58556718 transcript_region:SL2.40ch10:58555375..58556718- functional_description:"UPF0497 membrane protein At2g38480 (AHRD V1 ***- U497C_ARATH); contains Interpro domain(s) IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant "; NbS00015854g0004.1 protein NbS00004063g0001.1 protein NbS00004063g0003.1 protein ; (*ITAG) Solyc06g069500.2.1 (e_value=5e-48) genomic_reference:SL2.40ch06 gene_region:39664520-39673451 transcript_region:SL2.40ch06:39664520..39673451+ functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SD86_ARATH)"; NbS00015069g0002.1 protein ; (*GB) gi|147767067|emb|CAN69869.1| (e_value=4e-31) hypothetical protein VITISV_036524 [Vitis vinifera]; NbS00009449g0004.1 protein NbS00055395g0001.1 protein ; (*GB) gi|356557323|ref|XP_003546966.1| (e_value=5e-22) PREDICTED: uncharacterized protein LOC100794867 [Glycine max];; (*ITAG) Solyc03g121290.2.1 (e_value=6e-50) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00041866g0001.1 protein NbS00030067g0002.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00045774g0001.1 protein ; (*GB) gi|224066917|ref|XP_002302278.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYI9|NLTL5_ARATH (e_value=7e-19) Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1;; (*TAIR) AT5G64080.2 (e_value=4e-20) | Symbols: | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:25645475-25646638 REVERSE LENGTH=178;; (*ITAG) Solyc01g105010.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:85072925-85075312 transcript_region:SL2.40ch01:85072925..85075312- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- Q6I6X1_ZINEL); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00055217g0001.1 protein NbS00016149g0001.1 protein NbS00013257g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013257g0002.1 protein NbS00006439g0001.1 protein NbS00023363g0002.1 protein ; (*GB) gi|225465300|ref|XP_002269047.1| (e_value=0.0) PREDICTED: uncharacterized mitochondrial protein ymf11-like [Vitis vinifera];; (*SWP) sp|P38456|YMF11_MARPO (e_value=9e-35) Uncharacterized mitochondrial protein ymf11 OS=Marchantia polymorpha GN=YMF11 PE=4 SV=1;; (*TAIR) AT5G46920.1 (e_value=0.0) | Symbols: | Intron maturase, type II family protein | chr5:19053668-19055875 FORWARD LENGTH=735; NbS00043628g0001.1 protein NbS00034301g0001.1 protein NbC23890850g0001.1 protein ; (*GB) gi|255542432|ref|XP_002512279.1| (e_value=5e-38) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q0WP44|HASTY_ARATH (e_value=2e-34) Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1;; (*TAIR) AT3G05040.1 (e_value=2e-35) | Symbols: HST, HST1 | ARM repeat superfamily protein | chr3:1401479-1408095 REVERSE LENGTH=1202;; (*ITAG) Solyc01g098170.2.1 (e_value=6e-49) genomic_reference:SL2.40ch01 gene_region:80505430-80517080 transcript_region:SL2.40ch01:80505430..80517080+ go_terms:GO:0005487 functional_description:"Exportin 5 (Fragment) (AHRD V1 *--- Q5JTE8_HUMAN); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005487 NbS00019431g0002.1 protein NbS00031527g0001.1 protein NbS00059792g0003.1 protein ; (*GB) gi|294462836|gb|ADE76960.1| (e_value=5e-33) unknown [Picea sitchensis];; (*SWP) sp|Q9SA71|GLPT3_ARATH (e_value=8e-32) Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1;; (*TAIR) AT1G30560.1 (e_value=6e-33) | Symbols: | Major facilitator superfamily protein | chr1:10824761-10826293 FORWARD LENGTH=510;; (*ITAG) Solyc06g034290.2.1 (e_value=5e-38) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00014580g0004.1 protein NbS00005247g0004.1 protein ; (*GB) gi|113205246|gb|AAT39963.2| (e_value=3e-18) Polyprotein, putative [Solanum demissum]; NbS00014858g0101.1 protein NbS00033608g0003.1 protein NbS00003295g0101.1 protein NbC24289509g0001.1 protein ; (*GB) gi|224111046|ref|XP_002315729.1| (e_value=1e-46) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23070.1 (e_value=4e-39) | Symbols: ATCFM3A, CFM3A | CRM family member 3A | chr3:8203548-8207243 FORWARD LENGTH=881;; (*ITAG) Solyc09g083350.2.1 (e_value=3e-64) genomic_reference:SL2.40ch09 gene_region:64410108-64416669 transcript_region:SL2.40ch09:64410108..64416669+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK62_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00032986g0001.1 protein NbS00003407g0003.1 protein NbS00032686g0001.1 protein NbS00021899g0001.1 protein NbS00027031g0001.1 protein NbS00005288g0101.1 protein NbS00003286g0002.1 protein ; (*GB) gi|242041841|ref|XP_002468315.1| (e_value=8e-33) hypothetical protein SORBIDRAFT_01g043620 [Sorghum bicolor];; (*SWP) sp|O81108|ACA2_ARATH (e_value=3e-34) Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1;; (*TAIR) AT4G37640.1 (e_value=2e-35) | Symbols: ACA2 | calcium ATPase 2 | chr4:17683225-17686808 REVERSE LENGTH=1014;; (*ITAG) Solyc02g064680.2.1 (e_value=2e-36) genomic_reference:SL2.40ch02 gene_region:30333568-30339094 transcript_region:SL2.40ch02:30333568..30339094+ go_terms:GO:0016020,GO:0008152 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 ***- Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0016020,GO:0008152 NbS00055304g0001.1 protein NbS00039258g0002.1 protein NbS00017632g0001.1 protein NbS00037685g0001.1 protein NbS00032243g0001.1 protein NbS00010464g0001.1 protein NbS00045782g0003.1 protein ; (*GB) gi|255577895|ref|XP_002529820.1| (e_value=1e-14) ankyrin-kinase, putative [Ricinus communis];; (*TAIR) AT3G59830.1 (e_value=1e-16) | Symbols: | Integrin-linked protein kinase family | chr3:22103006-22105323 REVERSE LENGTH=477;; (*ITAG) Solyc12g019410.1.1 (e_value=5e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00032317g0002.1 protein NbS00011684g0001.1 protein NbS00011684g0002.1 protein NbS00012603g0001.1 protein NbS00028085g0002.1 protein NbS00013574g0002.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-20) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=6e-13) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426; NbS00039552g0002.1 protein NbS00039552g0103.1 protein NbS00058085g0001.1 protein ; (*GB) gi|225470952|ref|XP_002264456.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100241604 [Vitis vinifera];; (*ITAG) Solyc08g082900.2.1 (e_value=5e-55) genomic_reference:SL2.40ch08 gene_region:62717433-62721756 transcript_region:SL2.40ch08:62717433..62721756- go_terms:GO:0004871 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7KS76_ARALY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0004871 NbS00038458g0002.1 protein NbS00039106g0001.1 protein ; (*GB) gi|109675118|gb|ABG37021.1| (e_value=1e-100) aspartic protease [Nicotiana tabacum];; (*SWP) sp|O04057|ASPR_CUCPE (e_value=5e-76) Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1;; (*TAIR) AT1G11910.1 (e_value=3e-78) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc07g051850.2.1 (e_value=2e-93) genomic_reference:SL2.40ch07 gene_region:57713505-57718748 transcript_region:SL2.40ch07:57713505..57718748+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q96383_CENCA); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00006393g0101.1 protein NbS00006393g0102.1 protein NbS00008730g0002.1 protein NbS00008730g0203.1 protein NbC24684302g0001.1 protein ; (*ITAG) Solyc03g123640.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00042394g0001.1 protein NbS00002065g0004.1 protein NbS00047364g0001.1 protein ; (*ITAG) Solyc05g050470.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:59772994-59774352 transcript_region:SL2.40ch05:59772994..59774352+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 *-*- D7MH12_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00020825g0001.1 protein ; (*GB) gi|296082268|emb|CBI21273.3| (e_value=1e-87) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GZB6|SUVH4_ARATH (e_value=2e-75) Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 OS=Arabidopsis thaliana GN=SUVH4 PE=1 SV=2;; (*TAIR) AT5G13960.1 (e_value=1e-76) | Symbols: SUVH4, KYP, SDG33 | SU(VAR)3-9 homolog 4 | chr5:4501688-4505979 FORWARD LENGTH=624;; (*ITAG) Solyc02g094520.2.1 (e_value=1e-118) genomic_reference:SL2.40ch02 gene_region:49614028-49632724 transcript_region:SL2.40ch02:49614028..49632724- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY); contains Interpro domain(s) IPR003105 SRA-YDG "; GO:0005634 NbS00060093g0002.1 protein NbS00005463g0001.1 protein NbS00004254g0202.1 protein NbS00054571g0001.1 protein NbS00007814g0002.1 protein ; (*GB) gi|147806280|emb|CAN72193.1| (e_value=1e-52) hypothetical protein VITISV_022309 [Vitis vinifera];; (*SWP) sp|Q94DG6|ZIP1_ORYSJ (e_value=1e-49) Zinc transporter 1 OS=Oryza sativa subsp. japonica GN=ZIP1 PE=1 SV=1;; (*TAIR) AT1G55910.1 (e_value=2e-46) | Symbols: ZIP11 | zinc transporter 11 precursor | chr1:20906161-20907225 FORWARD LENGTH=326;; (*ITAG) Solyc06g005620.2.1 (e_value=2e-66) genomic_reference:SL2.40ch06 gene_region:678159-680743 transcript_region:SL2.40ch06:678159..680743- go_terms:GO:0005375 functional_description:"Zinc transporter (AHRD V1 **** Q9AWG7_MEDTR); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0005375 NbC24235527g0001.1 protein ; (*GB) gi|224118436|ref|XP_002317818.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*SWP) sp|P09379|GYP7_YARLI (e_value=1e-22) GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2;; (*TAIR) AT3G49350.1 (e_value=2e-58) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr3:18297663-18299846 REVERSE LENGTH=539;; (*ITAG) Solyc06g053190.2.1 (e_value=8e-64) genomic_reference:SL2.40ch06 gene_region:32408377-32414109 transcript_region:SL2.40ch06:32408377..32414109- go_terms:GO:0005622 functional_description:"GTPase activating-like protein (AHRD V1 **-- Q9SG14_ARATH); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00019004g0001.1 protein NbC24572623g0001.1 protein ; (*GB) gi|297845212|ref|XP_002890487.1| (e_value=7e-90) kelch repeat-containing F-box family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9LM55|FBK8_ARATH (e_value=6e-83) F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1;; (*TAIR) AT1G22040.1 (e_value=5e-84) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:7768370-7769797 FORWARD LENGTH=475;; (*ITAG) Solyc01g104980.2.1 (e_value=2e-116) genomic_reference:SL2.40ch01 gene_region:85060063-85062095 transcript_region:SL2.40ch01:85060063..85062095- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00005431g0007.1 protein NbS00011196g0001.1 protein ; (*GB) gi|225454755|ref|XP_002273949.1| (e_value=2e-63) PREDICTED: heat stress transcription factor A-1-like [Vitis vinifera];; (*SWP) sp|Q84T61|HSFA1_ORYSJ (e_value=1e-55) Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1;; (*TAIR) AT5G16820.2 (e_value=6e-55) | Symbols: HSF3, HSFA1B, ATHSFA1B | heat shock factor 3 | chr5:5530446-5532497 FORWARD LENGTH=481;; (*ITAG) Solyc03g097120.2.1 (e_value=2e-89) genomic_reference:SL2.40ch03 gene_region:52901766-52904929 transcript_region:SL2.40ch03:52901766..52904929- go_terms:GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 *-** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0003700 NbS00036264g0001.1 protein NbS00018679g0001.1 protein ; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=2e-34) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=3e-16) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=2e-17) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00014493g0001.1 protein NbS00000997g0101.1 protein NbS00004064g0001.1 protein NbS00012208g0101.1 protein NbS00005385g0001.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=2e-37) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=2e-28) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT2G23350.1 (e_value=1e-32) | Symbols: PAB4, PABP4 | poly(A) binding protein 4 | chr2:9943209-9946041 FORWARD LENGTH=662;; (*ITAG) Solyc12g088720.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00057738g0002.1 protein NbS00005451g0101.1 protein NbS00005451g0102.1 protein NbS00007265g0004.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-13) RNase H family protein [Solanum demissum]; NbS00003541g0002.1 protein NbS00037134g0001.1 protein NbS00006952g0101.1 protein NbS00042677g0001.1 protein ; (*ITAG) Solyc07g005320.2.1 (e_value=4e-22) genomic_reference:SL2.40ch07 gene_region:247287-259892 transcript_region:SL2.40ch07:247287..259892- go_terms:GO:0042802,GO:0003723 functional_description:"Pre-mRNA polyadenylation factor fip1 (AHRD V1 *-*- B6JX34_SCHJY); contains Interpro domain(s) IPR007854 Fip1 "; GO:0042802,GO:0003723 NbS00056350g0001.1 protein NbS00013385g0001.1 protein NbS00013563g0005.1 protein NbS00030577g0001.1 protein NbS00030577g0002.1 protein NbS00030577g0003.1 protein ; (*GB) gi|224082874|ref|XP_002306873.1| (e_value=3e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LEZ4|NFD5_ARATH (e_value=3e-16) Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1;; (*TAIR) AT1G19520.1 (e_value=1e-17) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025210.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26689621-26690748 transcript_region:SL2.40ch07:26689621..26690748- functional_description:"Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial (AHRD V1 ***- NFD5_ARATH)"; NbS00010214g0001.1 protein NbS00007501g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=4e-18) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00017934g0101.1 protein NbS00008729g0002.1 protein NbS00029318g0002.1 protein ; (*GB) gi|357488039|ref|XP_003614307.1| (e_value=6e-15) ATP-dependent DNA helicase PIF1 [Medicago truncatula]; NbS00001100g0001.1 protein NbS00020275g0002.1 protein ; (*GB) gi|20257451|gb|AAM15895.1|AF492578_1 (e_value=2e-27) GIA/RGA-like gibberellin response modulator [Calycadenia multiglandulosa];; (*SWP) sp|Q9LQT8|GAI_ARATH (e_value=2e-26) DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1;; (*TAIR) AT1G14920.1 (e_value=1e-27) | Symbols: GAI, RGA2 | GRAS family transcription factor family protein | chr1:5149414-5151015 FORWARD LENGTH=533;; (*ITAG) Solyc11g011260.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4303769-4305535 transcript_region:SL2.40ch11:4303769..4305535- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00008583g0002.1 protein NbS00013950g0004.1 protein NbS00013950g0005.1 protein NbC23900014g0001.1 protein ; (*GB) gi|350538397|ref|NP_001233829.1| (e_value=2e-23) adenylyl-sulfate reductase [Solanum lycopersicum];; (*SWP) sp|P92980|APR3_ARATH (e_value=6e-21) 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2;; (*TAIR) AT4G21990.1 (e_value=5e-22) | Symbols: APR3, PRH-26, PRH26, ATAPR3 | APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458;; (*ITAG) Solyc02g080640.2.1 (e_value=5e-26) genomic_reference:SL2.40ch02 gene_region:39406300-39409809 transcript_region:SL2.40ch02:39406300..39409809+ go_terms:GO:0009973 functional_description:"Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** B7I7M3_ACIB5); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0009973 NbS00057940g0001.1 protein NbS00056493g0002.1 protein NbS00060013g0001.1 protein NbS00006612g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=6e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00026949g0001.1 protein NbS00026949g0002.1 protein ; (*GB) gi|147770949|emb|CAN65090.1| (e_value=7e-41) hypothetical protein VITISV_035035 [Vitis vinifera];; (*SWP) sp|Q6Z3U3|Y7797_ORYSJ (e_value=8e-22) B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1;; (*TAIR) AT4G32010.1 (e_value=1e-20) | Symbols: HSL1, HSI2-L1, VAL2 | HSI2-like 1 | chr4:15481231-15484897 FORWARD LENGTH=780;; (*ITAG) Solyc06g082520.2.1 (e_value=4e-73) genomic_reference:SL2.40ch06 gene_region:44592516-44602333 transcript_region:SL2.40ch06:44592516..44602333- go_terms:GO:0005515,GO:0016564 functional_description:"AP2 domain-containing transcription factor (AHRD V1 *--* B9HWL7_POPTR); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0005515,GO:0016564 NbC24794875g0001.1 protein ; (*GB) gi|15231844|ref|NP_188056.1| (e_value=4e-61) diaminopimelate decarboxylase 1 [Arabidopsis thaliana];; (*SWP) sp|Q949X7|DCDA1_ARATH (e_value=1e-62) Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis thaliana GN=LYSA1 PE=1 SV=1;; (*TAIR) AT3G14390.1 (e_value=1e-63) | Symbols: | Pyridoxal-dependent decarboxylase family protein | chr3:4806771-4808954 FORWARD LENGTH=484;; (*ITAG) Solyc01g109850.2.1 (e_value=2e-83) genomic_reference:SL2.40ch01 gene_region:88449072-88454711 transcript_region:SL2.40ch01:88449072..88454711- go_terms:GO:0004040,GO:0008836 functional_description:"Diaminopimelate decarboxylase (AHRD V1 **** D2DKE7_SOYBN); contains Interpro domain(s) IPR002986 Diaminopimelate decarboxylase "; GO:0004040,GO:0008836 NbS00025499g0003.1 protein NbS00028802g0004.1 protein ; (*GB) gi|224101423|ref|XP_002312273.1| (e_value=4e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C507|PP111_ARATH (e_value=4e-49) Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3 SV=1;; (*TAIR) AT1G69350.1 (e_value=3e-50) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787;; (*ITAG) Solyc05g012630.1.1 (e_value=1e-86) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00002921g0001.1 protein NbS00002921g0004.1 protein NbS00061741g0001.1 protein ; (*GB) gi|224119958|ref|XP_002331102.1| (e_value=1e-75) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9STW5|MACP2_ARATH (e_value=8e-60) MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1;; (*TAIR) AT4G24290.1 (e_value=2e-63) | Symbols: | MAC/Perforin domain-containing protein | chr4:12594856-12596590 FORWARD LENGTH=350;; (*ITAG) Solyc01g103490.2.1 (e_value=2e-88) genomic_reference:SL2.40ch01 gene_region:83848324-83854531 transcript_region:SL2.40ch01:83848324..83854531+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA21_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00005152g0002.1 protein NbS00060330g0001.1 protein NbS00000156g0001.1 protein ; (*GB) gi|359475831|ref|XP_002282789.2| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100259525 [Vitis vinifera];; (*TAIR) AT2G25320.1 (e_value=6e-42) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=4e-57) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00000156g0002.1 protein ; (*GB) gi|49659730|gb|AAT68189.1| (e_value=8e-21) carotenoid cleavage dioxygenase 1 [Petunia x hybrida];; (*SWP) sp|Q94IR2|CCD1_PHAVU (e_value=2e-20) Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1;; (*TAIR) AT3G63520.1 (e_value=1e-19) | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid cleavage dioxygenase 1 | chr3:23452940-23455896 FORWARD LENGTH=538;; (*ITAG) Solyc01g087250.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:73945385-73956019 transcript_region:SL2.40ch01:73945385..73956019- go_terms:GO:0045549 functional_description:"Carotenoid cleavage dioxygenase 1A"; GO:0045549 NbS00000156g0005.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-19) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00000156g0006.1 protein NbS00010860g0001.1 protein NbS00050419g0001.1 protein ; (*ITAG) Solyc07g005380.2.1 (e_value=7e-33) genomic_reference:SL2.40ch07 gene_region:291108-292521 transcript_region:SL2.40ch07:291108..292521+ go_terms:GO:0009607 functional_description:"Pathogenesis-related (PR)-10-related norcoclaurine synthase-like protein (AHRD V1 **-- C3SBS5_ESCCA); contains Interpro domain(s) IPR000916 Bet v I allergen "; GO:0009607 NbS00028964g0001.1 protein ; (*GB) gi|359474464|ref|XP_003631475.1| (e_value=8e-79) PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SI78|PPR93_ARATH (e_value=3e-47) Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1;; (*TAIR) AT1G62720.1 (e_value=2e-48) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:23227574-23229031 FORWARD LENGTH=485;; (*ITAG) Solyc03g120460.2.1 (e_value=1e-63) genomic_reference:SL2.40ch03 gene_region:62898588-62902523 transcript_region:SL2.40ch03:62898588..62902523- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00022383g0002.1 protein NbS00016880g0003.1 protein ; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=1e-18) ubiquitin specific protease 12 [Nicotiana tabacum];; (*ITAG) Solyc05g055090.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00038315g0001.1 protein NbS00008404g0002.1 protein NbS00008404g0003.1 protein NbS00008404g0004.1 protein NbS00005047g0001.1 protein NbS00014278g0001.1 protein NbS00008191g0001.1 protein ; (*GB) gi|6671194|gb|AAF23127.1|AF198389_1 (e_value=4e-16) cystatin [Solanum lycopersicum];; (*ITAG) Solyc01g009020.2.1 (e_value=5e-21) genomic_reference:SL2.40ch01 gene_region:3021936-3024369 transcript_region:SL2.40ch01:3021936..3024369- go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q2VY67_9ERIC); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00008191g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-41) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc03g083740.1.1 (e_value=4e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47224097-47225350 transcript_region:SL2.40ch03:47224097..47225350+ functional_description:"Os10g0104700 protein (Fragment) (AHRD V1 *-*- Q0IZD0_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00022551g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-64) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027320g0001.1 protein NbC24589799g0001.1 protein ; (*GB) gi|356535533|ref|XP_003536299.1| (e_value=2e-72) PREDICTED: uncharacterized protein LOC100789310 [Glycine max];; (*SWP) sp|Q9Y169|EXT2_DROME (e_value=7e-18) Exostosin-2 OS=Drosophila melanogaster GN=Ext2 PE=1 SV=1;; (*TAIR) AT5G04500.1 (e_value=5e-72) | Symbols: | glycosyltransferase family protein 47 | chr5:1283604-1286155 FORWARD LENGTH=765;; (*ITAG) Solyc05g055420.2.1 (e_value=2e-88) genomic_reference:SL2.40ch05 gene_region:64216268-64222017 transcript_region:SL2.40ch05:64216268..64222017- go_terms:GO:0016757 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0016757 NbC25584041g0001.1 protein ; (*GB) gi|147770817|emb|CAN63166.1| (e_value=1e-51) hypothetical protein VITISV_040077 [Vitis vinifera];; (*SWP) sp|Q940J9|PMT8_ARATH (e_value=5e-45) Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1;; (*TAIR) AT1G04430.2 (e_value=4e-46) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:1198860-1201301 FORWARD LENGTH=623;; (*ITAG) Solyc09g090190.2.1 (e_value=6e-68) genomic_reference:SL2.40ch09 gene_region:65089763-65093797 transcript_region:SL2.40ch09:65089763..65093797+ functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q653G1_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00008373g0001.1 protein NbS00015645g0001.1 protein NbS00012414g0006.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=6e-18) conserved hypothetical protein [Ricinus communis]; NbS00011972g0101.1 protein NbS00000479g0106.1 protein NbC26323212g0001.1 protein NbS00054535g0001.1 protein ; (*GB) gi|224091282|ref|XP_002309217.1| (e_value=7e-134) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6YYA3|CRS1_ORYSJ (e_value=1e-56) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1;; (*TAIR) AT4G29750.1 (e_value=1e-110) | Symbols: | CRS1 / YhbY (CRM) domain-containing protein | chr4:14569728-14572962 FORWARD LENGTH=841;; (*ITAG) Solyc07g039500.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:44930650-44935280 transcript_region:SL2.40ch07:44930650..44935280+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK64_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00001933g0004.1 protein NbS00029429g0002.1 protein ; (*TAIR) AT4G29090.1 (e_value=7e-12) | Symbols: | Ribonuclease H-like superfamily protein | chr4:14333528-14335255 FORWARD LENGTH=575;; (*ITAG) Solyc05g039970.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00029429g0003.1 protein NbS00011394g0001.1 protein ; (*GB) gi|225447296|ref|XP_002279761.1| (e_value=7e-44) PREDICTED: septum-promoting GTP-binding protein 1-like [Vitis vinifera];; (*SWP) sp|P87027|SPG1_SCHPO (e_value=1e-19) Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1;; (*TAIR) AT3G21700.1 (e_value=3e-45) | Symbols: ATSGP2, SGP2 | Ras-related small GTP-binding family protein | chr3:7644581-7646190 FORWARD LENGTH=291;; (*ITAG) Solyc07g052410.2.1 (e_value=5e-48) genomic_reference:SL2.40ch07 gene_region:58250571-58252629 transcript_region:SL2.40ch07:58250571..58252629+ go_terms:GO:0005515,GO:0003924 functional_description:"Ras-related protein Rab-18 (AHRD V1 ***- B6TGJ7_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0005515,GO:0003924 NbC24939853g0001.1 protein ; (*GB) gi|224090051|ref|XP_002308922.1| (e_value=2e-60) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=2e-58) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=2e-59) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=8e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00019124g0002.1 protein NbS00034398g0001.1 protein ; (*ITAG) Solyc06g054020.2.1 (e_value=2e-32) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbC24014415g0001.1 protein ; (*GB) gi|255568141|ref|XP_002525046.1| (e_value=3e-20) adenylate kinase 1 chloroplast, putative [Ricinus communis];; (*SWP) sp|Q8HSW1|KADC_SOLTU (e_value=4e-17) Adenylate kinase, chloroplastic OS=Solanum tuberosum GN=ADK PE=2 SV=1;; (*TAIR) AT2G37250.1 (e_value=3e-17) | Symbols: ADK, ATPADK1 | adenosine kinase | chr2:15641991-15643318 FORWARD LENGTH=284;; (*ITAG) Solyc04g049690.2.1 (e_value=5e-26) genomic_reference:SL2.40ch04 gene_region:42201867-42210091 transcript_region:SL2.40ch04:42201867..42210091- go_terms:GO:0004017 functional_description:"Adenylate kinase (AHRD V1 **** B6SLP1_MAIZE); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0004017 NbS00003794g0003.1 protein NbS00025028g0001.1 protein ; (*GB) gi|296087620|emb|CBI34876.3| (e_value=5e-48) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G27670.1 (e_value=8e-27) | Symbols: RST1 | ARM repeat superfamily protein | chr3:10245338-10253158 FORWARD LENGTH=1841;; (*ITAG) Solyc02g086500.2.1 (e_value=1e-100) genomic_reference:SL2.40ch02 gene_region:43746420-43759951 transcript_region:SL2.40ch02:43746420..43759951+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGF10 (AHRD V1 **-- Q9LVX3_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00019673g0001.1 protein ; (*GB) gi|255557303|ref|XP_002519682.1| (e_value=6e-28) Calcyclin-binding protein, putative [Ricinus communis];; (*TAIR) AT1G30070.2 (e_value=2e-28) | Symbols: | SGS domain-containing protein | chr1:10546794-10548072 REVERSE LENGTH=229;; (*ITAG) Solyc08g016670.2.1 (e_value=3e-35) genomic_reference:SL2.40ch08 gene_region:8356898-8360520 transcript_region:SL2.40ch08:8356898..8360520+ go_terms:GO:0042803 functional_description:"Calcyclin-binding protein (AHRD V1 ***- B4FGY0_MAIZE); contains Interpro domain(s) IPR007699 SGS "; GO:0042803 NbS00002342g0001.1 protein NbS00003894g0006.1 protein NbS00002626g0006.1 protein NbS00021053g0002.1 protein ; (*GB) gi|224062133|ref|XP_002300771.1| (e_value=3e-44) predicted protein [Populus trichocarpa];; (*TAIR) AT4G21150.3 (e_value=1e-43) | Symbols: HAP6 | ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691;; (*ITAG) Solyc05g046330.2.1 (e_value=7e-64) genomic_reference:SL2.40ch05 gene_region:57707327-57721255 transcript_region:SL2.40ch05:57707327..57721255- go_terms:GO:0008250 functional_description:"Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (AHRD V1 *--- RPN2_HUMAN); contains Interpro domain(s) IPR008814 Ribophorin II "; GO:0008250 NbS00055828g0001.1 protein ; (*GB) gi|255554711|ref|XP_002518393.1| (e_value=7e-123) vacuolar protein sorting-associated protein, putative [Ricinus communis];; (*SWP) sp|Q54LB8|VP13A_DICDI (e_value=3e-31) Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1;; (*TAIR) AT5G24740.1 (e_value=4e-105) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045170.1.1 (e_value=4e-160) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36878299-36887767 transcript_region:SL2.40ch11:36878299..36887767+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 ***- D3BE65_POLPA)"; NbS00055828g0002.1 protein ; (*GB) gi|255554711|ref|XP_002518393.1| (e_value=9e-56) vacuolar protein sorting-associated protein, putative [Ricinus communis];; (*TAIR) AT5G24740.1 (e_value=2e-28) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045170.1.1 (e_value=9e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36878299-36887767 transcript_region:SL2.40ch11:36878299..36887767+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 ***- D3BE65_POLPA)"; NbS00012225g0001.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=2e-22) hypothetical protein VITISV_038665 [Vitis vinifera];; (*ITAG) Solyc02g062480.1.1 (e_value=6e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28737836-28740370 transcript_region:SL2.40ch02:28737836..28740370- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-A Gag-Pol polyprotein (AHRD V1 *-*- YA11B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00012225g0003.1 protein NbS00012372g0001.1 protein ; (*GB) gi|27728149|gb|AAN15319.1| (e_value=1e-139) isoamylase isoform 3 [Solanum tuberosum];; (*SWP) sp|Q9M0S5|ISOA3_ARATH (e_value=2e-124) Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2;; (*TAIR) AT4G09020.1 (e_value=1e-125) | Symbols: ATISA3, ISA3 | isoamylase 3 | chr4:5784099-5788839 FORWARD LENGTH=764;; (*ITAG) Solyc06g009220.2.1 (e_value=3e-142) genomic_reference:SL2.40ch06 gene_region:3155576-3182364 transcript_region:SL2.40ch06:3155576..3182364+ go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00012372g0002.1 protein NbS00000781g0004.1 protein NbS00000052g0003.1 protein NbS00024973g0001.1 protein ; (*GB) gi|297746423|emb|CBI16479.3| (e_value=3e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=4e-17) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=3e-18) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc01g020340.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:29350551-29354410 transcript_region:SL2.40ch01:29350551..29354410+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00002679g0002.1 protein NbS00006176g0001.1 protein ; (*GB) gi|388499848|gb|AFK37990.1| (e_value=2e-35) unknown [Medicago truncatula];; (*TAIR) AT1G67350.2 (e_value=4e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:25235826-25236122 FORWARD LENGTH=98; NbS00005724g0001.1 protein NbS00027912g0001.1 protein NbS00008861g0001.1 protein ; (*GB) gi|255556669|ref|XP_002519368.1| (e_value=2e-31) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9M9R6|PPR43_ARATH (e_value=3e-28) Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2;; (*TAIR) AT1G14470.1 (e_value=2e-29) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4954080-4955702 FORWARD LENGTH=540;; (*ITAG) Solyc01g102790.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:83258225-83260605 transcript_region:SL2.40ch01:83258225..83260605- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00008861g0005.1 protein NbS00051940g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-42) hypothetical protein [Nicotiana tabacum]; NbS00049653g0001.1 protein ; (*ITAG) Solyc06g007110.2.1 (e_value=2e-32) genomic_reference:SL2.40ch06 gene_region:1157531-1164321 transcript_region:SL2.40ch06:1157531..1164321+ go_terms:GO:0005524,GO:0003684 functional_description:"Smr domain protein (AHRD V1 *--- B0XRA1_ASPFC); contains Interpro domain(s) IPR013899 Region of unknown function DUF1771 "; GO:0005524,GO:0003684 NbS00023448g0002.1 protein NbC24707074g0001.1 protein ; (*GB) gi|359474191|ref|XP_002270742.2| (e_value=9e-60) PREDICTED: uncharacterized protein LOC100241023 [Vitis vinifera];; (*SWP) sp|Q9SRE5|Y1666_ARATH (e_value=9e-19) Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1;; (*TAIR) AT5G52430.1 (e_value=7e-41) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr5:21283093-21285045 REVERSE LENGTH=438;; (*ITAG) Solyc08g081240.2.1 (e_value=3e-124) genomic_reference:SL2.40ch08 gene_region:61459572-61463990 transcript_region:SL2.40ch08:61459572..61463990- functional_description:"Hydroxyproline-rich glycoprotein family protein (AHRD V1 ***- D7MRR7_ARALY)"; NbS00035467g0002.1 protein NbS00011574g0002.1 protein NbC23243904g0001.1 protein ; (*ITAG) Solyc04g081030.2.1 (e_value=1e-19) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00022610g0103.1 protein NbS00044885g0001.1 protein ; (*GB) gi|469072|dbj|BAA03743.1| (e_value=2e-21) RNA-binding gricine-rich protein-1c [Nicotiana sylvestris];; (*SWP) sp|P49310|GRP1_SINAL (e_value=5e-20) Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1;; (*TAIR) AT4G39260.2 (e_value=2e-20) | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circadian rhythm, and RNA binding 1 | chr4:18274166-18274958 REVERSE LENGTH=126;; (*ITAG) Solyc01g109660.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:88321513-88322795 transcript_region:SL2.40ch01:88321513..88322795+ go_terms:GO:0008266 functional_description:"Glycine-rich RNA-binding protein (AHRD V1 *-** B2YKT9_TOBAC); contains Interpro domain(s) IPR015465 RNA recognition motif, glycine rich protein "; GO:0008266 NbS00009901g0101.1 protein NbS00046183g0002.1 protein ; (*GB) gi|585451|sp|P37221.1|MAOM_SOLTU (e_value=3e-138) RecName: Full=NAD-dependent malic enzyme 62 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor;; (*SWP) sp|P37221|MAOM_SOLTU (e_value=8e-140) NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT2G13560.1 (e_value=7e-122) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623;; (*ITAG) Solyc08g013860.2.1 (e_value=3e-141) genomic_reference:SL2.40ch08 gene_region:3198664-3222236 transcript_region:SL2.40ch08:3198664..3222236- go_terms:GO:0005524,GO:0008270,GO:0050897 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0005524,GO:0008270,GO:0050897 NbS00005837g0002.1 protein NbS00021058g0001.1 protein NbS00040376g0001.1 protein ; (*GB) gi|225450630|ref|XP_002278172.1| (e_value=7e-146) PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FFE3|PP388_ARATH (e_value=4e-128) Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1;; (*TAIR) AT5G16420.1 (e_value=3e-129) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:5368034-5369641 FORWARD LENGTH=535;; (*ITAG) Solyc01g096210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79064695-79068628 transcript_region:SL2.40ch01:79064695..79068628- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M846_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00006316g0004.1 protein NbS00005022g0001.1 protein NbS00014411g0007.1 protein NbS00047404g0001.1 protein ; (*GB) gi|356525960|ref|XP_003531589.1| (e_value=3e-60) PREDICTED: cell division control protein 48 homolog C-like [Glycine max];; (*SWP) sp|Q9SS94|CD48C_ARATH (e_value=2e-45) Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2;; (*TAIR) AT3G01610.1 (e_value=1e-46) | Symbols: CDC48C, emb1354 | cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820;; (*ITAG) Solyc01g068330.2.1 (e_value=7e-133) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00049488g0001.1 protein ; (*ITAG) Solyc02g070060.1.1 (e_value=5e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34479260-34480840 transcript_region:SL2.40ch02:34479260..34480840- go_terms:GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH6_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0050660 NbS00048722g0001.1 protein ; (*ITAG) Solyc02g032200.2.1 (e_value=1e-42) genomic_reference:SL2.40ch02 gene_region:18711443-18715788 transcript_region:SL2.40ch02:18711443..18715788+ go_terms:GO:0030275 functional_description:"Tir-lrr, resistance protein fragment"; GO:0030275 NbC24530701g0001.1 protein ; (*GB) gi|157837030|pdb|5EAT|A (e_value=5e-52) Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate;; (*SWP) sp|Q84LF0|5EAS2_NICAT (e_value=4e-51) 5-epi-aristolochene synthase 2 OS=Nicotiana attenuata PE=1 SV=1;; (*TAIR) AT3G14540.1 (e_value=2e-14) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4881614-4883936 REVERSE LENGTH=602;; (*ITAG) Solyc01g101170.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:82768763-82771174 transcript_region:SL2.40ch01:82768763..82771174- go_terms:GO:0080017,GO:0080016 functional_description:"Alpha-humulene/(-)-(E)-beta-caryophyllene synthase (AHRD V1 **** HUMS_ARATH); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0080017,GO:0080016 NbS00013824g0002.1 protein ; (*GB) gi|147816465|emb|CAN64051.1| (e_value=2e-34) hypothetical protein VITISV_019945 [Vitis vinifera]; NbS00001508g0107.1 protein NbS00050187g0001.1 protein NbS00003459g0003.1 protein NbS00016211g0001.1 protein NbS00043460g0002.1 protein NbS00045312g0001.1 protein NbS00006382g0003.1 protein NbC23850340g0001.1 protein ; (*GB) gi|7673357|gb|AAF66824.1|AF190656_1 (e_value=2e-25) poly(A)-binding protein [Nicotiana tabacum];; (*TAIR) AT1G49760.2 (e_value=4e-20) | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671;; (*ITAG) Solyc01g107870.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:87021438-87028206 transcript_region:SL2.40ch01:87021438..87028206+ go_terms:GO:0008143 functional_description:"Poly(A) RNA binding protein (AHRD V1 **** B2CJ74_9HYPO); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0008143 NbC24356826g0001.1 protein ; (*GB) gi|297849874|ref|XP_002892818.1| (e_value=3e-54) hypothetical protein ARALYDRAFT_471639 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P93736|SYV_ARATH (e_value=5e-55) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=4e-56) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=1e-63) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00018426g0008.1 protein NbC25830002g0001.1 protein ; (*GB) gi|147839124|emb|CAN63654.1| (e_value=9e-129) hypothetical protein VITISV_027177 [Vitis vinifera];; (*SWP) sp|Q56078|BGLX_SALTY (e_value=5e-20) Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX PE=3 SV=2;; (*TAIR) AT5G04885.1 (e_value=2e-106) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc11g071650.1.1 (e_value=6e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52146575-52151986 transcript_region:SL2.40ch11:52146575..52151986+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00013023g0005.1 protein ; (*GB) gi|255587991|ref|XP_002534466.1| (e_value=2e-47) cation:cation antiporter, putative [Ricinus communis];; (*SWP) sp|Q9SYG9|CCX4_ARATH (e_value=4e-41) Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1;; (*TAIR) AT1G54115.1 (e_value=3e-42) | Symbols: ATCCX4, CCX4 | cation calcium exchanger 4 | chr1:20202118-20204052 FORWARD LENGTH=644;; (*ITAG) Solyc02g069710.2.1 (e_value=8e-39) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00012218g0001.1 protein NbS00022503g0003.1 protein NbS00022157g0001.1 protein NbS00058221g0001.1 protein ; (*ITAG) Solyc03g114060.2.1 (e_value=1e-23) genomic_reference:SL2.40ch03 gene_region:58154643-58161458 transcript_region:SL2.40ch03:58154643..58161458+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00060718g0001.1 protein NbC24485716g0001.1 protein ; (*GB) gi|147797429|emb|CAN75802.1| (e_value=3e-54) hypothetical protein VITISV_016976 [Vitis vinifera];; (*SWP) sp|Q9SRU2|BIG_ARATH (e_value=3e-48) Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=2 SV=2;; (*TAIR) AT3G02260.1 (e_value=2e-49) | Symbols: BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 | auxin transport protein (BIG) | chr3:431152-448489 REVERSE LENGTH=5098;; (*ITAG) Solyc02g089260.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:45704210-45726943 transcript_region:SL2.40ch02:45704210..45726943+ go_terms:GO:0005488,GO:0008270,GO:0005622 functional_description:"E3 ubiquitin-protein ligase UBR4 (AHRD V1 *--- UBR4_HUMAN); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0005488,GO:0008270,GO:0005622 NbS00031614g0001.1 protein NbS00034758g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-39) hypothetical protein [Nicotiana tabacum]; NbS00003985g0003.1 protein NbC26027469g0001.1 protein ; (*GB) gi|359493041|ref|XP_002267014.2| (e_value=3e-51) PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera];; (*SWP) sp|Q05D44|IF2P_MOUSE (e_value=5e-31) Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2;; (*TAIR) AT1G76810.1 (e_value=1e-48) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831366-28836310 REVERSE LENGTH=1294;; (*ITAG) Solyc03g058380.2.1 (e_value=1e-60) genomic_reference:SL2.40ch03 gene_region:21433635-21441601 transcript_region:SL2.40ch03:21433635..21441601- go_terms:GO:0005525 functional_description:"Translation initiation factor (AHRD V1 ***- Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0005525 NbS00019528g0001.1 protein NbS00045077g0001.1 protein NbS00010407g0001.1 protein NbS00061255g0001.1 protein ; (*GB) gi|47933777|gb|AAT39459.1| (e_value=2e-40) protein disulfide isomerase [Ipomoea batatas];; (*SWP) sp|Q43116|PDI_RICCO (e_value=7e-40) Protein disulfide-isomerase OS=Ricinus communis PE=2 SV=1;; (*TAIR) AT1G77510.1 (e_value=5e-35) | Symbols: ATPDIL1-2, PDI6, ATPDI6, PDIL1-2 | PDI-like 1-2 | chr1:29126742-29129433 FORWARD LENGTH=508;; (*ITAG) Solyc05g056400.2.1 (e_value=4e-43) genomic_reference:SL2.40ch05 gene_region:64861547-64864585 transcript_region:SL2.40ch05:64861547..64864585+ go_terms:GO:0003756,GO:0005515 functional_description:"Protein disulfide isomerase (AHRD V1 **** Q6IV17_IPOBA); contains Interpro domain(s) IPR005792 Protein disulphide isomerase "; GO:0003756,GO:0005515 NbS00020748g0002.1 protein NbS00018738g0002.1 protein ; (*ITAG) Solyc03g093090.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47718464-47722698 transcript_region:SL2.40ch03:47718464..47722698+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00030849g0003.1 protein ; (*GB) gi|255565409|ref|XP_002523695.1| (e_value=2e-51) ATP-dependent transporter, putative [Ricinus communis];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=2e-46) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=2e-47) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc11g069090.1.1 (e_value=1e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50759436-50762771 transcript_region:SL2.40ch11:50759436..50762771+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C0NDN3_AJECG); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbC24056934g0001.1 protein ; (*GB) gi|255544624|ref|XP_002513373.1| (e_value=2e-35) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q8GY84|RH10_ARATH (e_value=3e-36) DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2;; (*TAIR) AT5G60990.1 (e_value=3e-37) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:24546601-24549148 REVERSE LENGTH=456;; (*ITAG) Solyc10g007550.2.1 (e_value=4e-40) genomic_reference:SL2.40ch10 gene_region:1854624-1864124 transcript_region:SL2.40ch10:1854624..1864124- go_terms:GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- A8B7Q7_GIALA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00008789g0002.1 protein NbS00008789g0103.1 protein NbS00029172g0001.1 protein NbS00038972g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-41) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbC24087466g0001.1 protein ; (*GB) gi|255556510|ref|XP_002519289.1| (e_value=3e-20) vacuolar protein sorting-associated protein, putative [Ricinus communis];; (*TAIR) AT1G48090.1 (e_value=8e-13) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009370.2.1 (e_value=3e-39) genomic_reference:SL2.40ch09 gene_region:2767095-2803870 transcript_region:SL2.40ch09:2767095..2803870+ go_terms:GO:0008104,GO:0016021 functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- Q2UJU9_ASPOR); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; GO:0008104,GO:0016021 NbS00020685g0002.1 protein ; (*ITAG) Solyc10g076970.1.1 (e_value=9e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59236244-59239086 transcript_region:SL2.40ch10:59236244..59239086+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00014638g0102.1 protein NbC23305221g0001.1 protein ; (*ITAG) Solyc01g047590.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:40004252-40007036 transcript_region:SL2.40ch01:40004252..40007036- functional_description:"Signal recognition particle protein (AHRD V1 ***- B0XFF2_CULQU)"; NbS00005622g0003.1 protein ; (*ITAG) Solyc02g093780.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49078498-49079635 transcript_region:SL2.40ch02:49078498..49079635+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005622g0005.1 protein NbS00002674g0001.1 protein NbS00009600g0002.1 protein NbS00023562g0002.1 protein NbS00009800g0002.1 protein ; (*GB) gi|302141752|emb|CBI18955.3| (e_value=1e-86) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9VMJ7|KDM5_DROME (e_value=9e-11) Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1;; (*TAIR) AT1G77250.1 (e_value=5e-75) | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr1:29020444-29022938 REVERSE LENGTH=522;; (*ITAG) Solyc04g058190.2.1 (e_value=4e-161) genomic_reference:SL2.40ch04 gene_region:54429175-54443676 transcript_region:SL2.40ch04:54429175..54443676+ go_terms:GO:0003677 functional_description:"Lysine-specific demethylase 5D (AHRD V1 *--- KDM5D_CANFA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677 NbS00044488g0001.1 protein NbS00047553g0002.1 protein ; (*GB) gi|1710401|sp|P49730.1|RIR2_TOBAC (e_value=2e-47) RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit;; (*SWP) sp|P49730|RIR2_TOBAC (e_value=5e-49) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G27060.1 (e_value=4e-39) | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332;; (*ITAG) Solyc02g094160.1.1 (e_value=1e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:49359009-49359998 transcript_region:SL2.40ch02:49359009..49359998+ go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00004026g0001.1 protein NbS00027880g0002.1 protein NbS00048106g0001.1 protein ; (*GB) gi|357450103|ref|XP_003595328.1| (e_value=5e-30) Inter-alpha-trypsin inhibitor heavy chain H3 [Medicago truncatula];; (*TAIR) AT1G19110.1 (e_value=2e-27) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc07g042080.2.1 (e_value=5e-52) genomic_reference:SL2.40ch07 gene_region:52332572-52342131 transcript_region:SL2.40ch07:52332572..52342131+ functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 *-*- Q1YZ74_PHOPR); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00023373g0001.1 protein ; (*GB) gi|1743354|emb|CAA71003.1| (e_value=4e-74) aldehyde dehydrogenase (NAD+) [Nicotiana tabacum];; (*SWP) sp|Q8S528|AL2B7_ARATH (e_value=5e-68) Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2;; (*TAIR) AT1G23800.1 (e_value=4e-69) | Symbols: ALDH2B7, ALDH2B | aldehyde dehydrogenase 2B7 | chr1:8412238-8414804 REVERSE LENGTH=534;; (*ITAG) Solyc05g005700.2.1 (e_value=1e-74) genomic_reference:SL2.40ch05 gene_region:514498-518886 transcript_region:SL2.40ch05:514498..518886- go_terms:GO:0004029 functional_description:"Aldehyde dehydrogenase 1 (AHRD V1 **** Q84V96_LOTCO); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004029 NbC23546812g0001.1 protein ; (*GB) gi|224116508|ref|XP_002317318.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7N2|CAD1_ARATH (e_value=2e-22) MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1;; (*TAIR) AT1G29690.1 (e_value=2e-23) | Symbols: CAD1 | MAC/Perforin domain-containing protein | chr1:10379310-10381861 REVERSE LENGTH=561;; (*ITAG) Solyc02g071780.2.1 (e_value=2e-30) genomic_reference:SL2.40ch02 gene_region:35706526-35712769 transcript_region:SL2.40ch02:35706526..35712769- functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA38_HELPE); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00004310g0003.1 protein NbC24315517g0001.1 protein ; (*GB) gi|359490241|ref|XP_002268933.2| (e_value=7e-26) PREDICTED: GTPase Der-like [Vitis vinifera];; (*TAIR) AT5G39960.1 (e_value=4e-22) | Symbols: | GTP binding;GTP binding | chr5:15994195-15996820 FORWARD LENGTH=621;; (*ITAG) Solyc10g005910.2.1 (e_value=7e-27) genomic_reference:SL2.40ch10 gene_region:704986-709412 transcript_region:SL2.40ch10:704986..709412- go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein engA (AHRD V1 **** A9TY56_PHYPA); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0043022,GO:0003924 NbS00006603g0105.1 protein NbS00023065g0001.1 protein ; (*ITAG) Solyc02g081960.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:40291932-40295230 transcript_region:SL2.40ch02:40291932..40295230+ go_terms:GO:0005515,GO:0003723 functional_description:"Splicing factor (AHRD V1 *-*- Q5CJR5_CRYHO); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0005515,GO:0003723 NbC24176617g0001.1 protein ; (*GB) gi|225457588|ref|XP_002273221.1| (e_value=1e-57) PREDICTED: U-box domain-containing protein 43 [Vitis vinifera];; (*SWP) sp|Q9SFX2|PUB43_ARATH (e_value=3e-49) U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1;; (*TAIR) AT1G76390.2 (e_value=2e-50) | Symbols: | ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811;; (*ITAG) Solyc04g082570.2.1 (e_value=1e-69) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00043744g0001.1 protein NbS00033996g0001.1 protein NbC23597075g0001.1 protein ; (*GB) gi|195629924|gb|ACG36603.1| (e_value=3e-23) flap endonuclease 1a [Zea mays];; (*SWP) sp|C5YUK3|FEN11_SORBI (e_value=2e-24) Flap endonuclease 1-A OS=Sorghum bicolor GN=FEN1-A PE=3 SV=1;; (*TAIR) AT5G26680.2 (e_value=1e-24) | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383;; (*ITAG) Solyc01g102370.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:82961683-82969941 transcript_region:SL2.40ch01:82961683..82969941+ go_terms:GO:0017108 functional_description:"Flap structure specific endonuclease 1 (AHRD V1 **** Q6DRB5_DANRE); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0017108 NbS00003872g0101.1 protein NbS00026203g0002.1 protein ; (*GB) gi|356510059|ref|XP_003523758.1| (e_value=7e-34) PREDICTED: uncharacterized protein LOC100783686 [Glycine max];; (*TAIR) AT5G11700.2 (e_value=1e-32) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=7e-44) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00017662g0001.1 protein NbC25400098g0001.1 protein ; (*GB) gi|356568616|ref|XP_003552506.1| (e_value=1e-37) PREDICTED: inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase-like [Glycine max];; (*TAIR) AT5G15070.2 (e_value=2e-36) | Symbols: | Phosphoglycerate mutase-like family protein | chr5:4876898-4885615 FORWARD LENGTH=1059;; (*ITAG) Solyc02g087620.2.1 (e_value=6e-43) genomic_reference:SL2.40ch02 gene_region:44563220-44582860 transcript_region:SL2.40ch02:44563220..44582860+ go_terms:GO:0033187 functional_description:"Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (AHRD V1 **-* VIP2_MOUSE); contains Interpro domain(s) IPR000560 Histidine acid phosphatase "; GO:0033187 NbS00049220g0001.1 protein ; (*GB) gi|332322128|emb|CCA66036.1| (e_value=1e-13) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc06g035800.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00049220g0002.1 protein NbS00018430g0001.1 protein ; (*GB) gi|224109584|ref|XP_002315244.1| (e_value=2e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|O49603|CVIF2_ARATH (e_value=4e-14) Cell wall / vacuolar inhibitor of fructosidase 2 OS=Arabidopsis thaliana GN=C/VIF2 PE=1 SV=1;; (*TAIR) AT5G64620.1 (e_value=3e-15) | Symbols: C/VIF2, ATC/VIF2 | cell wall / vacuolar inhibitor of fructosidase 2 | chr5:25831875-25832417 FORWARD LENGTH=180;; (*ITAG) Solyc03g112170.1.1 (e_value=4e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:56722722-56723237 transcript_region:SL2.40ch03:56722722..56723237+ go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q674_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00004173g0003.1 protein NbC25406797g0001.1 protein ; (*GB) gi|350534996|ref|NP_001234170.1| (e_value=5e-39) auxin efflux facilitator SlPIN2 [Solanum lycopersicum];; (*TAIR) AT5G57090.1 (e_value=1e-11) | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | Auxin efflux carrier family protein | chr5:23100765-23104456 FORWARD LENGTH=647;; (*ITAG) Solyc07g006900.1.1 (e_value=1e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1755020-1757837 transcript_region:SL2.40ch07:1755020..1757837+ go_terms:GO:0010329,GO:0009672 functional_description:"Auxin efflux carrier protein (AHRD V1 **** Q84YG8_MEDTR); contains Interpro domain(s) IPR014024 Auxin efflux carrier, subgroup "; GO:0010329,GO:0009672 NbS00002077g0001.1 protein ; (*GB) gi|356569531|ref|XP_003552953.1| (e_value=1e-173) PREDICTED: protease Do-like 7-like [Glycine max];; (*SWP) sp|Q8RY22|DEGP7_ARATH (e_value=3e-162) Protease Do-like 7 OS=Arabidopsis thaliana GN=DEGP7 PE=2 SV=1;; (*TAIR) AT3G03380.1 (e_value=2e-163) | Symbols: DegP7 | DegP protease 7 | chr3:799720-808319 FORWARD LENGTH=1097;; (*ITAG) Solyc02g091410.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:47268452-47288648 transcript_region:SL2.40ch02:47268452..47288648- go_terms:GO:0004252 functional_description:"Pro-apoptotic serine protease nma111-like protein (AHRD V1 *-** D0NE02_PHYIN); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0004252 NbS00011356g0002.1 protein ; (*GB) gi|224061791|ref|XP_002300602.1| (e_value=1e-20) predicted protein [Populus trichocarpa]; NbC23813943g0001.1 protein ; (*GB) gi|710465|gb|AAB32822.1| (e_value=1e-35) OEP86=outer envelope protein [Peas, Peptide Chloroplast, 878 aa];; (*SWP) sp|O81283|TC159_ARATH (e_value=3e-34) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=2e-35) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc09g074940.1.1 (e_value=6e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:62229782-62233993 transcript_region:SL2.40ch09:62229782..62233993- go_terms:GO:0005525 functional_description:"Translocase of chloroplast 90, chloroplastic (AHRD V1 *-*- TOC90_ARATH); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0005525 NbS00029028g0004.1 protein NbS00014707g0001.1 protein NbS00001246g0003.1 protein NbS00002120g0005.1 protein NbS00032223g0001.1 protein NbS00030889g0001.1 protein NbS00030889g0002.1 protein NbS00003509g0001.1 protein NbS00003509g0101.1 protein NbS00028233g0001.1 protein ; (*GB) gi|357517641|ref|XP_003629109.1| (e_value=7e-52) Ankyrin repeat protein [Medicago truncatula];; (*SWP) sp|P16157|ANK1_HUMAN (e_value=2e-12) Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3;; (*TAIR) AT4G10720.2 (e_value=4e-46) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=412;; (*ITAG) Solyc06g074280.2.1 (e_value=7e-41) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00028233g0002.1 protein ; (*GB) gi|357456647|ref|XP_003598604.1| (e_value=1e-56) Ankyrin repeat-containing protein [Medicago truncatula];; (*TAIR) AT4G10720.2 (e_value=8e-51) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=412;; (*ITAG) Solyc06g074280.2.1 (e_value=2e-46) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00014997g0002.1 protein ; (*GB) gi|110349562|gb|ABG73256.1| (e_value=2e-30) class III HD-Zip protein HDZ32A [Austrobaileya scandens];; (*SWP) sp|Q39123|ATHB8_ARATH (e_value=7e-26) Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1;; (*TAIR) AT4G32880.1 (e_value=5e-27) | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8 | chr4:15863587-15867822 REVERSE LENGTH=833;; (*ITAG) Solyc08g066500.2.1 (e_value=3e-35) genomic_reference:SL2.40ch08 gene_region:52415522-52421037 transcript_region:SL2.40ch08:52415522..52421037- go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00039257g0001.1 protein ; (*GB) gi|307136168|gb|ADN34009.1| (e_value=6e-41) amidase [Cucumis melo subsp. melo];; (*TAIR) AT4G34880.1 (e_value=2e-35) | Symbols: | Amidase family protein | chr4:16615549-16617424 FORWARD LENGTH=466;; (*ITAG) Solyc01g111210.2.1 (e_value=8e-33) genomic_reference:SL2.40ch01 gene_region:89303121-89308860 transcript_region:SL2.40ch01:89303121..89308860+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B6JZE9_SCHJY); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00010383g0005.1 protein NbS00010383g0006.1 protein ; (*GB) gi|147811795|emb|CAN74865.1| (e_value=7e-55) hypothetical protein VITISV_043090 [Vitis vinifera]; NbS00009747g0001.1 protein NbS00023023g0001.1 protein NbS00019845g0002.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=6e-41) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*TAIR) AT2G01050.1 (e_value=4e-13) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515;; (*ITAG) Solyc00g006170.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00035728g0001.1 protein NbS00035728g0002.1 protein NbS00029599g0001.1 protein NbS00007021g0001.1 protein ; (*GB) gi|41176619|gb|AAR99599.1| (e_value=2e-82) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q8RXD9|DPE2_ARATH (e_value=9e-77) 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1;; (*TAIR) AT2G40840.1 (e_value=7e-78) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=5e-82) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00007021g0104.1 protein NbS00013051g0106.1 protein NbS00000554g0102.1 protein NbS00025181g0001.1 protein NbS00007341g0004.1 protein NbS00020065g0001.1 protein NbS00012155g0001.1 protein NbS00017042g0001.1 protein NbS00017042g0002.1 protein NbS00006607g0101.1 protein NbC23843986g0001.1 protein ; (*GB) gi|225441645|ref|XP_002277003.1| (e_value=2e-38) PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Vitis vinifera];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=4e-39) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT1G64760.2 (e_value=3e-40) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24054220-24056194 REVERSE LENGTH=481;; (*ITAG) Solyc12g019890.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:12107524-12110521 transcript_region:SL2.40ch12:12107524..12110521- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00024930g0004.1 protein NbS00031184g0001.1 protein NbS00031184g0003.1 protein ; (*GB) gi|110826035|gb|ABH01084.1| (e_value=3e-13) putative ROX1 [Nicotiana tabacum];; (*ITAG) Solyc02g077710.1.1 (e_value=1e-11) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37172109-37173137 transcript_region:SL2.40ch02:37172109..37173137+ functional_description:"E6-2 protein kinase (AHRD V1 *-*- B6E139_GOSHI)"; NbS00007763g0001.1 protein NbS00008023g0001.1 protein ; (*GB) gi|296086092|emb|CBI31533.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G39970.1 (e_value=5e-28) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc05g052640.2.1 (e_value=9e-29) genomic_reference:SL2.40ch05 gene_region:61997330-62007009 transcript_region:SL2.40ch05:61997330..62007009- go_terms:GO:0005515 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515 NbS00013438g0001.1 protein NbS00015225g0002.1 protein ; (*ITAG) Solyc10g005830.2.1 (e_value=3e-18) genomic_reference:SL2.40ch10 gene_region:646209-647697 transcript_region:SL2.40ch10:646209..647697+ functional_description:"Homoserine dehydrogenase-like (AHRD V1 ***- Q5QLC2_ORYSJ)"; NbC24206643g0001.1 protein ; (*GB) gi|297745582|emb|CBI40747.3| (e_value=4e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6DR03|ZDHC3_ARATH (e_value=1e-27) Probable S-acyltransferase At2g33640 OS=Arabidopsis thaliana GN=At2g33640 PE=2 SV=1;; (*TAIR) AT2G33640.1 (e_value=9e-29) | Symbols: | DHHC-type zinc finger family protein | chr2:14239500-14242240 FORWARD LENGTH=565;; (*ITAG) Solyc04g082650.2.1 (e_value=1e-43) genomic_reference:SL2.40ch04 gene_region:63855181-63861096 transcript_region:SL2.40ch04:63855181..63861096+ go_terms:GO:0005515 functional_description:"Palmitoyltransferase erf2 (AHRD V1 *-*- C5FZI1_NANOT); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515 NbS00040744g0003.1 protein NbS00025270g0001.1 protein NbS00042716g0001.1 protein ; (*GB) gi|225440966|ref|XP_002277252.1| (e_value=1e-19) PREDICTED: uncharacterized protein LOC100244201 [Vitis vinifera];; (*ITAG) Solyc10g083530.1.1 (e_value=6e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:62646441-62649709 transcript_region:SL2.40ch10:62646441..62649709- functional_description:"Unknown Protein (AHRD V1)"; NbS00051159g0004.1 protein NbS00000646g0002.1 protein NbS00024581g0103.1 protein NbS00019558g0002.1 protein NbC25524516g0001.1 protein ; (*GB) gi|255552987|ref|XP_002517536.1| (e_value=2e-58) aspartate aminotransferase, putative [Ricinus communis];; (*TAIR) AT1G80360.1 (e_value=4e-45) | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:30208736-30210643 REVERSE LENGTH=394;; (*ITAG) Solyc03g120450.2.1 (e_value=9e-66) genomic_reference:SL2.40ch03 gene_region:62886665-62893048 transcript_region:SL2.40ch03:62886665..62893048- go_terms:GO:0009058,GO:0030170 functional_description:"Aminotransferase (AHRD V1 ***- Q39Q29_GEOMG); contains Interpro domain(s) IPR004839 Aminotransferase, class I and II "; GO:0009058,GO:0030170 NbS00021263g0001.1 protein NbC23233801g0001.1 protein ; (*GB) gi|356557841|ref|XP_003547219.1| (e_value=2e-16) PREDICTED: pumilio homolog 2-like [Glycine max];; (*TAIR) AT2G29190.2 (e_value=9e-15) | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071 REVERSE LENGTH=972;; (*ITAG) Solyc06g076340.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:43818114-43826901 transcript_region:SL2.40ch06:43818114..43826901+ go_terms:GO:0003729 functional_description:"mRNA binding protein Pumilio 2 (AHRD V1 *-** C1GCQ9_PARBD); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0003729 NbS00007017g0001.1 protein NbS00006900g0002.1 protein NbS00006900g0003.1 protein ; (*GB) gi|225455498|ref|XP_002264793.1| (e_value=2e-148) PREDICTED: receptor-like protein 12-like [Vitis vinifera];; (*SWP) sp|Q9C9H7|RLP12_ARATH (e_value=6e-97) Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2;; (*TAIR) AT3G11010.1 (e_value=8e-108) | Symbols: AtRLP34, RLP34 | receptor like protein 34 | chr3:3450988-3453672 REVERSE LENGTH=894;; (*ITAG) Solyc07g005150.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:168999-172106 transcript_region:SL2.40ch07:168999..172106+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00000887g0001.1 protein ; (*GB) gi|6969231|gb|AAF33670.1|AF079872_1 (e_value=1e-28) cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum];; (*SWP) sp|O65717|CNGC1_ARATH (e_value=3e-16) Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1;; (*TAIR) AT5G53130.1 (e_value=3e-17) | Symbols: CNGC1, ATCNGC1 | cyclic nucleotide gated channel 1 | chr5:21537830-21540490 REVERSE LENGTH=716;; (*ITAG) Solyc03g007250.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1812278-1812970 transcript_region:SL2.40ch03:1812278..1812970- functional_description:"CNGC5-like protein (Fragment) (AHRD V1 *-*- A5X8E1_9FABA); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; NbS00024772g0001.1 protein NbS00025972g0003.1 protein NbS00033675g0002.1 protein NbS00022923g0001.1 protein NbS00028218g0001.1 protein ; (*GB) gi|388510126|gb|AFK43129.1| (e_value=7e-12) unknown [Lotus japonicus];; (*SWP) sp|Q6RVV4|TIC32_PEA (e_value=3e-11) Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1;; (*TAIR) AT5G02540.1 (e_value=6e-13) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:568609-570720 FORWARD LENGTH=331;; (*ITAG) Solyc03g025370.2.1 (e_value=5e-19) genomic_reference:SL2.40ch03 gene_region:7182311-7187586 transcript_region:SL2.40ch03:7182311..7187586- go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- B2WS98_9BRAS); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00023043g0001.1 protein NbS00011895g0001.1 protein ; (*GB) gi|147771521|emb|CAN75691.1| (e_value=2e-50) hypothetical protein VITISV_038532 [Vitis vinifera];; (*TAIR) AT5G42760.1 (e_value=1e-46) | Symbols: | Leucine carboxyl methyltransferase | chr5:17148953-17150105 FORWARD LENGTH=348; NbS00004866g0002.1 protein NbS00058557g0001.1 protein NbS00011471g0002.1 protein ; (*GB) gi|224133440|ref|XP_002321568.1| (e_value=7e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62570.1 (e_value=1e-17) | Symbols: | Calmodulin binding protein-like | chr5:25114988-25116967 FORWARD LENGTH=476;; (*ITAG) Solyc03g113920.2.1 (e_value=1e-40) genomic_reference:SL2.40ch03 gene_region:58021814-58027822 transcript_region:SL2.40ch03:58021814..58027822+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** D7MMC2_ARALY); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00011471g0004.1 protein ; (*ITAG) Solyc03g114110.2.1 (e_value=4e-24) genomic_reference:SL2.40ch03 gene_region:58189455-58195300 transcript_region:SL2.40ch03:58189455..58195300- go_terms:GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0030551 NbS00013252g0002.1 protein NbS00024946g0102.1 protein NbS00011189g0003.1 protein NbS00028903g0001.1 protein NbS00028903g0002.1 protein NbS00004227g0001.1 protein NbS00004227g0102.1 protein NbS00004227g0201.1 protein NbS00014359g0001.1 protein NbS00014359g0002.1 protein ; (*GB) gi|224070702|ref|XP_002303205.1| (e_value=6e-14) predicted protein [Populus trichocarpa]; NbS00011579g0007.1 protein ; (*GB) gi|59800202|sp|P69242.1|RPOT3_NICSY (e_value=1e-14) RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor;; (*SWP) sp|P69242|RPOT3_NICSY (e_value=4e-16) DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1;; (*TAIR) AT2G24120.1 (e_value=4e-14) | Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10249358-10254530 REVERSE LENGTH=993;; (*ITAG) Solyc01g097110.1.1 (e_value=9e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79816578-79835266 transcript_region:SL2.40ch01:79816578..79835266- functional_description:"Fanconi anemia group D2 protein (AHRD V1 *-*- FACD2_HUMAN)"; NbS00006698g0005.1 protein ; (*GB) gi|2459817|gb|AAC28906.1| (e_value=2e-21) polygalacturonase 5 [Solanum lycopersicum];; (*TAIR) AT2G43870.1 (e_value=2e-15) | Symbols: | Pectin lyase-like superfamily protein | chr2:18166615-18168264 REVERSE LENGTH=384;; (*ITAG) Solyc12g096740.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63868858-63870294 transcript_region:SL2.40ch12:63868858..63870294- go_terms:GO:0005975 functional_description:"Polygalacturonase 5 (AHRD V1 ***- O22313_SOLLC); contains Interpro domain(s) IPR000408 Regulator of chromosome condensation, RCC1 IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00034363g0004.1 protein ; (*GB) gi|147786879|emb|CAN62309.1| (e_value=7e-16) hypothetical protein VITISV_008927 [Vitis vinifera]; NbS00034363g0007.1 protein ; (*ITAG) Solyc11g065520.1.1 (e_value=3e-11) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00009619g0101.1 protein NbS00009619g0103.1 protein NbS00041509g0003.1 protein ; (*GB) gi|4584515|emb|CAB40749.1| (e_value=2e-137) starch branching enzyme II [Solanum tuberosum];; (*SWP) sp|O23647|GLGB1_ARATH (e_value=3e-55) 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.1 PE=1 SV=1;; (*TAIR) AT2G36390.1 (e_value=2e-56) | Symbols: SBE2.1, BE3 | starch branching enzyme 2.1 | chr2:15264283-15269940 FORWARD LENGTH=858;; (*ITAG) Solyc09g009190.2.1 (e_value=4e-122) genomic_reference:SL2.40ch09 gene_region:2539818-2558047 transcript_region:SL2.40ch09:2539818..2558047+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme II (AHRD V1 **** P93691_WHEAT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00007878g0002.1 protein NbS00004484g0001.1 protein ; (*ITAG) Solyc03g006380.2.1 (e_value=2e-36) genomic_reference:SL2.40ch03 gene_region:976227-983439 transcript_region:SL2.40ch03:976227..983439- functional_description:"Unknown Protein (AHRD V1)"; NbS00033909g0003.1 protein ; (*GB) gi|255550387|ref|XP_002516244.1| (e_value=3e-26) polygalacturonase, putative [Ricinus communis];; (*TAIR) AT3G42950.1 (e_value=4e-22) | Symbols: | Pectin lyase-like superfamily protein | chr3:15015383-15017800 FORWARD LENGTH=484;; (*ITAG) Solyc07g042160.2.1 (e_value=4e-40) genomic_reference:SL2.40ch07 gene_region:52473909-52486990 transcript_region:SL2.40ch07:52473909..52486990+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00014519g0002.1 protein NbS00050320g0003.1 protein NbS00050669g0001.1 protein NbC23204368g0001.1 protein ; (*GB) gi|297746476|emb|CBI16532.3| (e_value=4e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|O74476|IMB3_SCHPO (e_value=7e-15) Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=2 SV=1;; (*TAIR) AT5G19820.1 (e_value=7e-29) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=8e-34) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00008473g0002.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=1e-37) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbC26007970g0001.1 protein NbS00013731g0001.1 protein NbS00019892g0002.1 protein NbC24520597g0001.1 protein ; (*GB) gi|85069279|gb|ABC69711.1| (e_value=6e-50) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=3e-31) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.4 (e_value=2e-32) | Symbols: ARF2 | auxin response factor 2 | chr5:24910859-24914873 FORWARD LENGTH=853;; (*ITAG) Solyc12g042070.1.1 (e_value=1e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbC23588111g0001.1 protein ; (*GB) gi|356502315|ref|XP_003519965.1| (e_value=6e-30) PREDICTED: uncharacterized protein LOC100794753 [Glycine max];; (*TAIR) AT1G71870.1 (e_value=4e-30) | Symbols: | MATE efflux family protein | chr1:27032456-27034895 REVERSE LENGTH=510;; (*ITAG) Solyc11g016970.1.1 (e_value=4e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7624890-7627907 transcript_region:SL2.40ch11:7624890..7627907+ go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_ENTS8); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00005426g0103.1 protein NbS00001200g0001.1 protein NbS00037448g0001.1 protein ; (*ITAG) Solyc04g009500.2.1 (e_value=2e-15) genomic_reference:SL2.40ch04 gene_region:2915852-2927412 transcript_region:SL2.40ch04:2915852..2927412+ go_terms:GO:0006355 functional_description:"CTV.22 (AHRD V1 *-*- Q8H6Q7_PONTR); contains Interpro domain(s) IPR003101 Coactivator CBP, KIX "; GO:0006355 NbS00053605g0001.1 protein ; (*GB) gi|225440364|ref|XP_002270472.1| (e_value=2e-53) PREDICTED: uncharacterized protein LOC100256181 [Vitis vinifera];; (*TAIR) AT5G02320.2 (e_value=2e-18) | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548;; (*ITAG) Solyc09g010820.2.1 (e_value=1e-101) genomic_reference:SL2.40ch09 gene_region:4108171-4115660 transcript_region:SL2.40ch09:4108171..4115660+ go_terms:GO:0003700 functional_description:"MYB transcription factor (AHRD V1 **** Q6R032_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003700 NbS00000989g0001.1 protein NbS00000111g0001.1 protein NbS00035968g0001.1 protein NbS00018453g0001.1 protein ; (*GB) gi|224097732|ref|XP_002311059.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=6e-14) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT5G66920.1 (e_value=4e-19) | Symbols: sks17 | SKU5 similar 17 | chr5:26722963-26725370 FORWARD LENGTH=546;; (*ITAG) Solyc11g008030.1.1 (e_value=6e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2243066-2250910 transcript_region:SL2.40ch11:2243066..2250910+ go_terms:GO:0055114 functional_description:"Laccase-16 (AHRD V1 **-- LAC16_ARATH); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00027349g0007.1 protein NbS00039420g0002.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=7e-16) predicted protein [Populus trichocarpa]; NbS00024429g0003.1 protein ; (*GB) gi|302141839|emb|CBI19042.3| (e_value=6e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q99JW2|ACY1_MOUSE (e_value=5e-17) Aminoacylase-1 OS=Mus musculus GN=Acy1 PE=1 SV=1;; (*TAIR) AT1G44820.1 (e_value=2e-38) | Symbols: | Peptidase M20/M25/M40 family protein | chr1:16926351-16928354 FORWARD LENGTH=438;; (*ITAG) Solyc11g012970.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5799780-5805190 transcript_region:SL2.40ch11:5799780..5805190+ go_terms:GO:0008152,GO:0005737 functional_description:"Aminoacylase-1 (AHRD V1 ***- B6TNG9_MAIZE); contains Interpro domain(s) IPR010159 N-acyl-L-amino-acid amidohydrolase "; GO:0008152,GO:0005737 NbS00024429g0005.1 protein NbS00024429g0006.1 protein NbS00051296g0001.1 protein ; (*GB) gi|224075084|ref|XP_002304551.1| (e_value=7e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=6e-16) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=4e-17) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc06g082610.2.1 (e_value=8e-19) genomic_reference:SL2.40ch06 gene_region:44662023-44664895 transcript_region:SL2.40ch06:44662023..44664895- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00003912g0004.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-24) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=6e-53) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00004283g0003.1 protein NbS00027673g0001.1 protein NbC23940629g0001.1 protein ; (*GB) gi|27372782|gb|AAO03579.1| (e_value=9e-57) cellulose synthase-like protein D4 [Populus tremuloides];; (*SWP) sp|Q9M9M4|CSLD3_ARATH (e_value=5e-56) Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1;; (*TAIR) AT3G03050.1 (e_value=4e-57) | Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145;; (*ITAG) Solyc03g097050.2.1 (e_value=2e-60) genomic_reference:SL2.40ch03 gene_region:52847305-52851906 transcript_region:SL2.40ch03:52847305..52851906- go_terms:GO:0016759 functional_description:"Cellulose synthase-like protein (AHRD V1 **** B9IPJ4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00000890g0002.1 protein NbS00028826g0001.1 protein NbS00025584g0002.1 protein NbS00048100g0002.1 protein ; (*GB) gi|147768077|emb|CAN69394.1| (e_value=4e-31) hypothetical protein VITISV_021011 [Vitis vinifera];; (*SWP) sp|Q0WSN2|DAR2_ARATH (e_value=1e-29) Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1;; (*TAIR) AT2G39830.1 (e_value=9e-31) | Symbols: DAR2 | DA1-related protein 2 | chr2:16619950-16623658 REVERSE LENGTH=528;; (*ITAG) Solyc05g052910.2.1 (e_value=6e-36) genomic_reference:SL2.40ch05 gene_region:62226323-62233083 transcript_region:SL2.40ch05:62226323..62233083- go_terms:GO:0008270 functional_description:"Actin-binding LIM protein 1 (AHRD V1 *--- ABLM1_MOUSE); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0008270 NbS00005155g0001.1 protein NbS00005553g0102.1 protein NbS00009817g0001.1 protein NbC26242373g0001.1 protein NbC23325727g0001.1 protein ; (*GB) gi|225445484|ref|XP_002282063.1| (e_value=2e-27) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9FI80|PP425_ARATH (e_value=7e-15) Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1;; (*TAIR) AT5G48910.1 (e_value=5e-16) | Symbols: LPA66 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19832969-19834909 REVERSE LENGTH=646;; (*ITAG) Solyc09g090440.1.1 (e_value=1e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65305130-65306850 transcript_region:SL2.40ch09:65305130..65306850+ go_terms:GO:0005030,GO:0034046 functional_description:"Pentatricopeptide repeat protein (AHRD V1 ***- D2STE4_GOSHI); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005030,GO:0034046 NbS00042364g0002.1 protein ; (*GB) gi|297746120|emb|CBI16176.3| (e_value=6e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJE6|PP437_ARATH (e_value=6e-51) Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1;; (*TAIR) AT5G59900.1 (e_value=5e-52) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24123983-24126706 REVERSE LENGTH=907;; (*ITAG) Solyc11g073270.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00034906g0001.1 protein NbS00041655g0001.1 protein NbS00008185g0001.1 protein ; (*GB) gi|255554467|ref|XP_002518272.1| (e_value=8e-101) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G30380.1 (e_value=2e-73) | Symbols: | Plant protein of unknown function (DUF641) | chr2:12948284-12950573 FORWARD LENGTH=519;; (*ITAG) Solyc01g091120.2.1 (e_value=3e-50) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00008185g0002.1 protein ; (*GB) gi|225434359|ref|XP_002276671.1| (e_value=9e-39) PREDICTED: uncharacterized protein LOC100265602 [Vitis vinifera];; (*TAIR) AT2G45260.1 (e_value=2e-32) | Symbols: | Plant protein of unknown function (DUF641) | chr2:18664661-18665938 REVERSE LENGTH=425;; (*ITAG) Solyc01g091120.2.1 (e_value=4e-28) genomic_reference:SL2.40ch01 gene_region:76585783-76587387 transcript_region:SL2.40ch01:76585783..76587387- functional_description:"Os03g0825600 protein (Fragment) (AHRD V1 ***- Q0DM67_ORYSJ); contains Interpro domain(s) IPR006943 Protein of unknown function DUF641, plant "; NbS00024741g0004.1 protein NbS00023974g0001.1 protein ; (*GB) gi|161963244|dbj|BAF95185.1| (e_value=4e-69) cyclic nucleotide gated channel [Malus x domestica];; (*SWP) sp|Q9LD37|CNG20_ARATH (e_value=1e-58) Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1;; (*TAIR) AT3G17700.1 (e_value=9e-60) | Symbols: CNBT1, CNGC20, ATCNGC20 | cyclic nucleotide-binding transporter 1 | chr3:6049074-6052449 FORWARD LENGTH=764;; (*ITAG) Solyc03g098210.2.1 (e_value=5e-50) genomic_reference:SL2.40ch03 gene_region:54006686-54020551 transcript_region:SL2.40ch03:54006686..54020551- go_terms:GO:0004497,GO:0030551 functional_description:"Cyclic nucleotide gated channel (AHRD V1 **** A9CRE4_MALDO); contains Interpro domain(s) IPR018490 Cyclic nucleotide-binding-like "; GO:0004497,GO:0030551 NbS00025166g0001.1 protein ; (*GB) gi|359494129|ref|XP_002278428.2| (e_value=5e-14) PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]; NbS00006444g0003.1 protein NbS00005816g0002.1 protein NbS00056894g0006.1 protein NbS00001338g0011.1 protein NbS00001338g0007.1 protein NbS00001338g0010.1 protein NbS00033226g0001.1 protein NbS00001957g0002.1 protein NbS00002938g0001.1 protein NbS00060768g0001.1 protein NbS00033443g0001.1 protein NbS00034450g0005.1 protein NbS00027503g0001.1 protein NbS00027503g0003.1 protein NbS00004900g0001.1 protein ; (*GB) gi|224137728|ref|XP_002322630.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*ITAG) Solyc10g079520.1.1 (e_value=6e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60380417-60382000 transcript_region:SL2.40ch10:60380417..60382000+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00027008g0001.1 protein NbS00027008g0103.1 protein NbS00000211g0103.1 protein NbS00016145g0005.1 protein NbS00001578g0001.1 protein ; (*ITAG) Solyc07g053010.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58750255-58752894 transcript_region:SL2.40ch07:58750255..58752894- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00036481g0001.1 protein NbS00013204g0002.1 protein NbS00037472g0001.1 protein ; (*GB) gi|255544808|ref|XP_002513465.1| (e_value=4e-44) Protein MSF1, putative [Ricinus communis];; (*SWP) sp|Q5YGP7|PLET2_ARATH (e_value=5e-30) AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1;; (*TAIR) AT1G51190.1 (e_value=4e-31) | Symbols: PLT2 | Integrase-type DNA-binding superfamily protein | chr1:18977517-18980305 FORWARD LENGTH=568;; (*ITAG) Solyc11g061750.1.1 (e_value=7e-54) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45463808-45467453 transcript_region:SL2.40ch11:45463808..45467453+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00003896g0002.1 protein NbS00003896g0004.1 protein ; (*GB) gi|115434460|ref|NP_001041988.1| (e_value=4e-14) Os01g0142000 [Oryza sativa Japonica Group]; NbS00023616g0001.1 protein NbS00023616g0004.1 protein NbS00028316g0003.1 protein NbS00028316g0004.1 protein NbS00028316g0005.1 protein NbS00028316g0007.1 protein ; (*ITAG) Solyc00g058280.1.1 (e_value=7e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:14036744-14037773 transcript_region:SL2.40ch00:14036744..14037773- functional_description:"Unknown Protein (AHRD V1)"; NbS00019731g0003.1 protein NbC25480463g0001.1 protein ; (*GB) gi|121551091|gb|ABM55743.1| (e_value=2e-36) mitogen-associated protein kinase 2 [Capsicum annuum];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=2e-29) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT3G59790.1 (e_value=1e-17) | Symbols: ATMPK10, MPK10 | MAP kinase 10 | chr3:22092448-22094240 FORWARD LENGTH=393;; (*ITAG) Solyc08g014420.2.1 (e_value=4e-30) genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00001952g0001.1 protein NbS00001952g0002.1 protein NbS00001889g0102.1 protein NbS00022566g0003.1 protein NbS00028082g0002.1 protein NbS00024255g0005.1 protein ; (*GB) gi|147856457|emb|CAN80769.1| (e_value=1e-32) hypothetical protein VITISV_013866 [Vitis vinifera];; (*SWP) sp|Q9M9R6|PPR43_ARATH (e_value=4e-22) Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana GN=PCMP-A4 PE=2 SV=2;; (*TAIR) AT1G14470.1 (e_value=3e-23) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:4954080-4955702 FORWARD LENGTH=540;; (*ITAG) Solyc01g102790.2.1 (e_value=2e-56) genomic_reference:SL2.40ch01 gene_region:83258225-83260605 transcript_region:SL2.40ch01:83258225..83260605- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00024548g0001.1 protein NbS00005466g0101.1 protein NbS00021769g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=7e-34) RNase H family protein [Solanum demissum];; (*ITAG) Solyc03g093900.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:49035058-49035842 transcript_region:SL2.40ch03:49035058..49035842- go_terms:GO:0003676,GO:0004523 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00010566g0001.1 protein NbS00031112g0001.1 protein ; (*GB) gi|302754964|ref|XP_002960906.1| (e_value=5e-13) hypothetical protein SELMODRAFT_229868 [Selaginella moellendorffii];; (*TAIR) AT5G64410.1 (e_value=3e-12) | Symbols: ATOPT4, OPT4 | oligopeptide transporter 4 | chr5:25750921-25754974 REVERSE LENGTH=729;; (*ITAG) Solyc04g076750.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:59232077-59235653 transcript_region:SL2.40ch04:59232077..59235653- go_terms:GO:0005427 functional_description:"Oligopeptide transporter 4 (AHRD V1 **** B6U8Q5_MAIZE); contains Interpro domain(s) IPR004648 Tetrapeptide transporter, OPT1/isp4 "; GO:0005427 NbS00013344g0002.1 protein ; (*GB) gi|125562526|gb|EAZ07974.1| (e_value=2e-44) hypothetical protein OsI_30232 [Oryza sativa Indica Group];; (*SWP) sp|Q43209|PIMT_WHEAT (e_value=1e-25) Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1;; (*TAIR) AT5G50240.3 (e_value=5e-27) | Symbols: PIMT2, AtPIMT2 | protein-l-isoaspartate methyltransferase 2 | chr5:20451671-20452461 FORWARD LENGTH=215;; (*ITAG) Solyc03g111830.2.1 (e_value=2e-32) genomic_reference:SL2.40ch03 gene_region:56497562-56502317 transcript_region:SL2.40ch03:56497562..56502317+ go_terms:GO:0004719,GO:0042802 functional_description:"Protein-L-isoaspartate O-methyltransferase (AHRD V1 **** B9I3I9_POPTR); contains Interpro domain(s) IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase "; GO:0004719,GO:0042802 NbS00025033g0001.1 protein NbS00016333g0102.1 protein NbS00022155g0003.1 protein ; (*GB) gi|350538095|ref|NP_001234838.1| (e_value=4e-56) alcohol dehydrogenase-like [Solanum lycopersicum];; (*SWP) sp|P51110|DFRA_VITVI (e_value=2e-17) Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1;; (*TAIR) AT5G19440.1 (e_value=7e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:6556493-6558123 FORWARD LENGTH=326;; (*ITAG) Solyc01g087640.2.1 (e_value=8e-59) genomic_reference:SL2.40ch01 gene_region:74345022-74349166 transcript_region:SL2.40ch01:74345022..74349166- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- A9PFK4_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00012053g0102.1 protein NbS00012053g0106.1 protein NbC25055943g0001.1 protein ; (*GB) gi|388512969|gb|AFK44546.1| (e_value=8e-72) unknown [Lotus japonicus];; (*SWP) sp|Q93XX5|Y5713_ARATH (e_value=7e-53) PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1;; (*TAIR) AT1G49740.1 (e_value=1e-65) | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:18407728-18409468 FORWARD LENGTH=359;; (*ITAG) Solyc01g107990.2.1 (e_value=7e-80) genomic_reference:SL2.40ch01 gene_region:87135966-87140638 transcript_region:SL2.40ch01:87135966..87140638- go_terms:GO:0023034,GO:0006629,GO:0055114 functional_description:"MAPprotein kinase-like protein (AHRD V1 **-- Q9LT86_ARATH); contains Interpro domain(s) IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain "; GO:0023034,GO:0006629,GO:0055114 NbS00014433g0002.1 protein NbS00014433g0005.1 protein NbS00028733g0001.1 protein ; (*GB) gi|147772924|emb|CAN67177.1| (e_value=3e-35) hypothetical protein VITISV_037455 [Vitis vinifera];; (*SWP) sp|P09444|LEA34_GOSHI (e_value=6e-36) Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1;; (*TAIR) AT3G22490.1 (e_value=1e-32) | Symbols: | Seed maturation protein | chr3:7969785-7970738 REVERSE LENGTH=262;; (*ITAG) Solyc09g082110.2.1 (e_value=5e-36) genomic_reference:SL2.40ch09 gene_region:63348965-63350120 transcript_region:SL2.40ch09:63348965..63350120- functional_description:"Seed maturation protein (AHRD V1 **-- Q2Q4X9_MEDTR); contains Interpro domain(s) IPR007011 Seed maturation protein "; NbS00001280g0003.1 protein NbS00016043g0001.1 protein ; (*GB) gi|224117002|ref|XP_002331805.1| (e_value=8e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9AXB0|DCUP1_ORYSJ (e_value=8e-63) Uroporphyrinogen decarboxylase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0622300 PE=2 SV=1;; (*TAIR) AT3G14930.3 (e_value=1e-63) | Symbols: HEME1 | Uroporphyrinogen decarboxylase | chr3:5021290-5022577 FORWARD LENGTH=341;; (*ITAG) Solyc10g007320.2.1 (e_value=2e-81) genomic_reference:SL2.40ch10 gene_region:1723048-1727585 transcript_region:SL2.40ch10:1723048..1727585- go_terms:GO:0004853,GO:0042803 functional_description:"Uroporphyrinogen decarboxylase (AHRD V1 **** D7L387_ARALY); contains Interpro domain(s) IPR006361 Uroporphyrinogen decarboxylase HemE "; GO:0004853,GO:0042803 NbS00048018g0001.1 protein NbS00055250g0002.1 protein NbS00011696g0003.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=3e-33) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc01g010100.1.1 (e_value=6e-50) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4837391-4838867 transcript_region:SL2.40ch01:4837391..4838867+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001538g0001.1 protein ; (*GB) gi|296083581|emb|CBI14791.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q70XY1|PSBB_AMBTC (e_value=4e-19) Photosystem II CP47 chlorophyll apoprotein OS=Amborella trichopoda GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=6e-20) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00008950g0002.1 protein NbS00023537g0001.1 protein ; (*ITAG) Solyc03g122200.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64160591-64161841 transcript_region:SL2.40ch03:64160591..64161841+ functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00014538g0001.1 protein NbS00004200g0001.1 protein ; (*GB) gi|356528332|ref|XP_003532758.1| (e_value=7e-36) PREDICTED: uncharacterized protein LOC100787670 isoform 1 [Glycine max];; (*TAIR) AT4G11560.1 (e_value=9e-34) | Symbols: | bromo-adjacent homology (BAH) domain-containing protein | chr4:7000095-7003445 REVERSE LENGTH=587;; (*ITAG) Solyc08g081050.2.1 (e_value=2e-60) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00020213g0002.1 protein NbS00018940g0005.1 protein ; (*ITAG) Solyc09g072730.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:60860048-60860654 transcript_region:SL2.40ch09:60860048..60860654- go_terms:GO:0008270 functional_description:"GRF zinc finger family protein expressed (AHRD V1 *-*- Q10CE1_ORYSJ); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00018940g0008.1 protein NbS00002733g0006.1 protein ; (*GB) gi|359490626|ref|XP_002271841.2| (e_value=2e-40) PREDICTED: gibberellin 20 oxidase 1-B-like [Vitis vinifera];; (*TAIR) AT4G23340.2 (e_value=1e-38) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:12195719-12196339 REVERSE LENGTH=206;; (*ITAG) Solyc03g025490.2.1 (e_value=3e-60) genomic_reference:SL2.40ch03 gene_region:7271287-7272707 transcript_region:SL2.40ch03:7271287..7272707+ go_terms:GO:0045544 functional_description:"Gibberellin 20-oxidase-like protein (AHRD V1 **** Q9FGV8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045544 NbS00009044g0001.1 protein NbS00009044g0002.1 protein NbS00048444g0001.1 protein ; (*GB) gi|149926799|ref|ZP_01915058.1| (e_value=4e-75) cysteinyl-tRNA synthetase [Limnobacter sp. MED105];; (*SWP) sp|B2U9P8|SYC_RALPJ (e_value=5e-41) Cysteine--tRNA ligase OS=Ralstonia pickettii (strain 12J) GN=cysS PE=3 SV=1; NbS00028919g0005.1 protein NbS00005417g0001.1 protein NbS00017177g0001.1 protein NbS00041098g0001.1 protein ; (*GB) gi|163860158|gb|ABY41242.1| (e_value=3e-39) homeodomain protein HOX1 [Gossypium arboreum];; (*SWP) sp|P46607|HGL2_ARATH (e_value=5e-31) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.2 (e_value=3e-32) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037093-30041013 FORWARD LENGTH=776;; (*ITAG) Solyc03g120620.2.1 (e_value=1e-39) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00039782g0001.1 protein ; (*GB) gi|373938257|dbj|BAL46500.1| (e_value=2e-102) ABC transporter [Diospyros kaki];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=3e-72) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=2e-73) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc11g009100.1.1 (e_value=6e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3211903-3218285 transcript_region:SL2.40ch11:3211903..3218285+ go_terms:GO:0016020,GO:0017111,GO:0016887 functional_description:"ABC transporter G family member 11 (AHRD V1 ***- AB11G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0016020,GO:0017111,GO:0016887 NbS00012999g0002.1 protein NbS00001520g0003.1 protein NbS00001520g0004.1 protein NbS00024721g0002.1 protein ; (*GB) gi|302142222|emb|CBI19425.3| (e_value=5e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67090.1 (e_value=7e-18) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087740.1.1 (e_value=6e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:74428303-74430612 transcript_region:SL2.40ch01:74428303..74430612+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00027851g0001.1 protein NbS00037616g0004.1 protein ; (*GB) gi|255540691|ref|XP_002511410.1| (e_value=6e-49) EXECUTER1 protein, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q93YW0|EXEC1_ARATH (e_value=4e-24) Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1;; (*TAIR) AT1G27510.1 (e_value=3e-42) | Symbols: | Protein of unknown function (DUF3506) | chr1:9554945-9558293 REVERSE LENGTH=651;; (*ITAG) Solyc06g071430.2.1 (e_value=7e-59) genomic_reference:SL2.40ch06 gene_region:40335709-40344949 transcript_region:SL2.40ch06:40335709..40344949+ functional_description:"T17H3.1 protein (Fragment) (AHRD V1 ***- Q9SXD0_ARATH)"; NbS00016005g0002.1 protein NbS00019876g0001.1 protein NbS00038246g0002.1 protein ; (*GB) gi|224097268|ref|XP_002310895.1| (e_value=4e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|P44573|OPDA_HAEIN (e_value=1e-16) Oligopeptidase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=prlC PE=3 SV=1;; (*TAIR) AT5G65620.1 (e_value=1e-47) | Symbols: | Zincin-like metalloproteases family protein | chr5:26221951-26225784 FORWARD LENGTH=791;; (*ITAG) Solyc02g091580.2.1 (e_value=3e-49) genomic_reference:SL2.40ch02 gene_region:47413078-47421457 transcript_region:SL2.40ch02:47413078..47421457- go_terms:GO:0008235,GO:0008241 functional_description:"Oligopeptidase A (AHRD V1 ***- Q9LSL3_ARATH); contains Interpro domain(s) IPR001567 Peptidase M3A and M3B, thimet/oligopeptidase F "; GO:0008235,GO:0008241 NbS00028784g0001.1 protein ; (*GB) gi|255568534|ref|XP_002525241.1| (e_value=1e-28) WD-repeat protein, putative [Ricinus communis];; (*TAIR) AT1G55680.1 (e_value=3e-26) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:20804988-20807294 REVERSE LENGTH=445;; (*ITAG) Solyc10g005730.2.1 (e_value=2e-34) genomic_reference:SL2.40ch10 gene_region:586250-591686 transcript_region:SL2.40ch10:586250..591686- go_terms:GO:0055114 functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7L1D2_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0055114 NbS00015219g0001.1 protein NbS00037895g0001.1 protein NbS00037570g0001.1 protein NbS00046996g0004.1 protein NbS00053469g0001.1 protein NbC23139529g0001.1 protein ; (*ITAG) Solyc00g007100.2.1 (e_value=2e-16) genomic_reference:SL2.40ch00 gene_region:6708738-6712713 transcript_region:SL2.40ch00:6708738..6712713- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U105_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00010073g0003.1 protein NbS00005960g0001.1 protein ; (*GB) gi|122196609|sp|Q285L8.1|RS3A_TOBAC (e_value=6e-28) RecName: Full=40S ribosomal protein S3a; AltName: Full=Protein cyc07;; (*SWP) sp|Q285L8|RS3A_TOBAC (e_value=2e-29) 40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1;; (*TAIR) AT4G34670.1 (e_value=2e-23) | Symbols: | Ribosomal protein S3Ae | chr4:16548724-16550222 FORWARD LENGTH=262;; (*ITAG) Solyc03g097900.2.1 (e_value=3e-30) genomic_reference:SL2.40ch03 gene_region:53729328-53731821 transcript_region:SL2.40ch03:53729328..53731821- go_terms:GO:0032183 functional_description:"40S ribosomal protein S1 (AHRD V1 ***- RS3A_LENED); contains Interpro domain(s) IPR001593 Ribosomal protein S3Ae "; GO:0032183 NbS00018849g0001.1 protein NbS00018849g0011.1 protein NbS00018849g0008.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=3e-31) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g098090.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64084430-64086291 transcript_region:SL2.40ch12:64084430..64086291+ go_terms:GO:0008415,GO:0008152,GO:0009058 functional_description:"Chalcone synthase (AHRD V1 ***- C5IWS6_NICAL); contains Interpro domain(s) IPR001099 Chalcone/stilbene synthase, N-terminal "; GO:0008415,GO:0008152,GO:0009058 NbS00018849g0010.1 protein NbS00021365g0002.1 protein NbS00021500g0001.1 protein NbS00025010g0001.1 protein NbS00024172g0006.1 protein NbS00024172g0007.1 protein NbS00010579g0004.1 protein NbS00001635g0003.1 protein NbS00004895g0001.1 protein NbS00009421g0004.1 protein NbS00009421g0005.1 protein ; (*GB) gi|224127598|ref|XP_002329317.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT1G67230.1 (e_value=5e-12) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc02g089800.2.1 (e_value=9e-43) genomic_reference:SL2.40ch02 gene_region:46075529-46082342 transcript_region:SL2.40ch02:46075529..46082342- functional_description:"Nuclear matrix constituent protein 1-like (AHRD V1 ***- A6BME3_PETCR)"; NbS00050150g0001.1 protein ; (*GB) gi|255573451|ref|XP_002527651.1| (e_value=3e-33) nucleic acid binding protein, putative [Ricinus communis];; (*SWP) sp|Q84UQ3|C3H56_ORYSJ (e_value=5e-23) Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa subsp. japonica GN=Os08g0159800 PE=2 SV=1;; (*TAIR) AT1G32360.1 (e_value=1e-21) | Symbols: | Zinc finger (CCCH-type) family protein | chr1:11673325-11675162 FORWARD LENGTH=384;; (*ITAG) Solyc06g072720.2.1 (e_value=2e-43) genomic_reference:SL2.40ch06 gene_region:41239040-41242945 transcript_region:SL2.40ch06:41239040..41242945- go_terms:GO:0003700 functional_description:"Zinc finger CCCH domain-containing protein 56 (AHRD V1 ***- C3H56_ORYSJ); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0003700 NbS00050150g0003.1 protein ; (*GB) gi|224126219|ref|XP_002319785.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=6e-22) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT4G27600.1 (e_value=2e-37) | Symbols: NARA5 | pfkB-like carbohydrate kinase family protein | chr4:13782753-13785005 REVERSE LENGTH=471;; (*ITAG) Solyc07g053520.1.1 (e_value=1e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:59268732-59270615 transcript_region:SL2.40ch07:59268732..59270615- go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L781_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbS00011622g0002.1 protein ; (*GB) gi|224080043|ref|XP_002306001.1| (e_value=2e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93Y37|MNS3_ARATH (e_value=1e-121) Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 OS=Arabidopsis thaliana GN=MNS3 PE=2 SV=1;; (*TAIR) AT1G30000.1 (e_value=1e-122) | Symbols: MNS3 | alpha-mannosidase 3 | chr1:10509532-10512320 REVERSE LENGTH=624;; (*ITAG) Solyc02g070520.2.1 (e_value=2e-135) genomic_reference:SL2.40ch02 gene_region:34830173-34839202 transcript_region:SL2.40ch02:34830173..34839202+ go_terms:GO:0004571 functional_description:"Mannosyl-oligosaccharide 1 2-alpha-mannosidase (AHRD V1 **** B2VZK4_PYRTR); contains Interpro domain(s) IPR001382 Glycoside hydrolase, family 47 "; GO:0004571 NbS00002584g0202.1 protein NbS00017503g0002.1 protein ; (*ITAG) Solyc07g041100.1.1 (e_value=5e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49145538-49146146 transcript_region:SL2.40ch07:49145538..49146146+ functional_description:"Unknown Protein (AHRD V1)"; NbC24749848g0001.1 protein ; (*GB) gi|359486497|ref|XP_002272442.2| (e_value=1e-22) PREDICTED: anaphase-promoting complex subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=3e-18) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=2e-19) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048450.2.1 (e_value=8e-33) genomic_reference:SL2.40ch06 gene_region:27551031-27564579 transcript_region:SL2.40ch06:27551031..27564579+ functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 *-*- A2ATQ4_MOUSE)"; NbS00005478g0002.1 protein NbS00005478g0101.1 protein NbS00028605g0001.1 protein ; (*GB) gi|255555719|ref|XP_002518895.1| (e_value=1e-84) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q921Y4|MFSD5_MOUSE (e_value=1e-19) Major facilitator superfamily domain-containing protein 5 OS=Mus musculus GN=Mfsd5 PE=2 SV=1;; (*TAIR) AT4G27720.1 (e_value=2e-82) | Symbols: | Major facilitator superfamily protein | chr4:13831203-13833521 FORWARD LENGTH=460;; (*ITAG) Solyc03g082660.2.1 (e_value=5e-91) genomic_reference:SL2.40ch03 gene_region:46115283-46120778 transcript_region:SL2.40ch03:46115283..46120778+ functional_description:"Major facilitator superfamily domain containing protein 5 (AHRD V1 ***- B2W8V3_PYRTR); contains Interpro domain(s) IPR008509 Protein of unknown function DUF791 "; NbS00026273g0003.1 protein NbS00041291g0001.1 protein NbS00015140g0001.1 protein NbS00033415g0001.1 protein NbS00008468g0001.1 protein NbC23492897g0001.1 protein ; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=2e-20) strictosidine synthase, putative [Ricinus communis];; (*TAIR) AT1G08470.1 (e_value=4e-21) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=1e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00020762g0002.1 protein NbS00027699g0001.1 protein NbS00027871g0001.1 protein NbC23313247g0001.1 protein ; (*GB) gi|356549722|ref|XP_003543240.1| (e_value=2e-20) PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Glycine max];; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=2e-21) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=2e-22) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=3e-23) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00007570g0001.1 protein NbS00016464g0003.1 protein NbS00016464g0004.1 protein ; (*GB) gi|125561762|gb|EAZ07210.1| (e_value=6e-15) hypothetical protein OsI_29454 [Oryza sativa Indica Group]; NbS00016464g0005.1 protein ; (*GB) gi|255559909|ref|XP_002520973.1| (e_value=2e-24) histone acetyltransferase gcn5, putative [Ricinus communis];; (*TAIR) AT3G54610.1 (e_value=7e-16) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045400.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00017376g0001.1 protein NbS00006158g0004.1 protein NbS00004976g0003.1 protein NbS00004976g0004.1 protein NbS00025345g0001.1 protein NbS00061615g0001.1 protein ; (*GB) gi|374095607|gb|AEY85031.1| (e_value=1e-94) putative pre-mRNA splicing factor [Camellia sinensis];; (*SWP) sp|O94906|PRP6_HUMAN (e_value=5e-57) Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1;; (*TAIR) AT4G03430.1 (e_value=1e-78) | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-related | chr4:1517411-1520500 REVERSE LENGTH=1029;; (*ITAG) Solyc07g054200.2.1 (e_value=2e-67) genomic_reference:SL2.40ch07 gene_region:59882358-59885774 transcript_region:SL2.40ch07:59882358..59885774+ go_terms:GO:0043021 functional_description:"Pre-mrna splicing factor (AHRD V1 ***- Q16T65_AEDAE); contains Interpro domain(s) IPR010491 PRP1 splicing factor, N-terminal "; GO:0043021 NbS00007887g0001.1 protein NbS00007887g0003.1 protein NbS00029442g0102.1 protein NbS00002834g0001.1 protein NbS00031472g0001.1 protein NbS00031472g0002.1 protein ; (*GB) gi|357494985|ref|XP_003617781.1| (e_value=2e-11) hypothetical protein MTR_5g095400 [Medicago truncatula]; NbS00006226g0004.1 protein NbS00018467g0102.1 protein NbS00048451g0001.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=2e-18) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=3e-17) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00000103g0003.1 protein NbS00017092g0005.1 protein NbS00003757g0003.1 protein NbS00004228g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=9e-27) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00037121g0001.1 protein ; (*GB) gi|548491|sp|Q05967.1|PGLR_TOBAC (e_value=1e-30) RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor;; (*SWP) sp|Q05967|PGLR_TOBAC (e_value=4e-32) Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1;; (*TAIR) AT3G07850.1 (e_value=2e-19) | Symbols: | Pectin lyase-like superfamily protein | chr3:2505813-2507438 REVERSE LENGTH=444;; (*ITAG) Solyc00g030510.2.1 (e_value=4e-28) genomic_reference:SL2.40ch00 gene_region:12605204-12607615 transcript_region:SL2.40ch00:12605204..12607615+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9MBC0_SALGI); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbS00059392g0004.1 protein NbS00015135g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-14) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00055663g0001.1 protein ; (*GB) gi|224071411|ref|XP_002303447.1| (e_value=6e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31930.3 (e_value=1e-18) | Symbols: XLG3 | extra-large GTP-binding protein 3 | chr1:11465832-11468961 FORWARD LENGTH=848;; (*ITAG) Solyc08g005310.2.1 (e_value=3e-22) genomic_reference:SL2.40ch08 gene_region:235686-244594 transcript_region:SL2.40ch08:235686..244594+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00020228g0002.1 protein ; (*GB) gi|225446625|ref|XP_002276769.1| (e_value=2e-52) PREDICTED: uncharacterized protein LOC100267778 [Vitis vinifera];; (*TAIR) AT1G64880.1 (e_value=1e-40) | Symbols: | Ribosomal protein S5 family protein | chr1:24105713-24108780 FORWARD LENGTH=515;; (*ITAG) Solyc11g008710.1.1 (e_value=7e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2887741-2892339 transcript_region:SL2.40ch11:2887741..2892339+ go_terms:GO:0005840,GO:0005622 functional_description:"30S ribosomal protein S5 (AHRD V1 *-*- C7R892_KANKD); contains Interpro domain(s) IPR000851 Ribosomal protein S5 "; GO:0005840,GO:0005622 NbS00023578g0002.1 protein NbS00043059g0001.1 protein ; (*GB) gi|57013884|ref|YP_173358.1| (e_value=8e-52) orf297a [Nicotiana tabacum];; (*ITAG) Solyc11g065520.1.1 (e_value=4e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00030842g0001.1 protein NbS00030842g0003.1 protein NbS00000608g0101.1 protein NbS00030139g0002.1 protein ; (*GB) gi|388503288|gb|AFK39710.1| (e_value=3e-24) unknown [Lotus japonicus];; (*ITAG) Solyc07g045080.2.1 (e_value=2e-32) genomic_reference:SL2.40ch07 gene_region:55517820-55520065 transcript_region:SL2.40ch07:55517820..55520065+ go_terms:GO:0032440,GO:0004022 functional_description:"Alcohol dehydrogenase zinc-containing (AHRD V1 **-* B4RDK4_PHEZH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0032440,GO:0004022 NbS00041222g0002.1 protein NbS00038775g0001.1 protein NbS00015749g0002.1 protein NbS00031302g0001.1 protein ; (*GB) gi|350537913|ref|NP_001234317.1| (e_value=3e-16) TBG6 protein precursor [Solanum lycopersicum];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=9e-14) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.1 (e_value=7e-15) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=856;; (*ITAG) Solyc02g084720.2.1 (e_value=6e-19) genomic_reference:SL2.40ch02 gene_region:42396478-42402602 transcript_region:SL2.40ch02:42396478..42402602- go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9LLS9_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin "; GO:0005515 NbS00031302g0003.1 protein ; (*ITAG) Solyc10g047880.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:38408640-38409029 transcript_region:SL2.40ch10:38408640..38409029+ functional_description:"Unknown Protein (AHRD V1)"; NbS00035771g0001.1 protein NbS00046549g0003.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00023189g0001.1 protein ; (*ITAG) Solyc02g086130.2.1 (e_value=1e-21) genomic_reference:SL2.40ch02 gene_region:43474986-43479696 transcript_region:SL2.40ch02:43474986..43479696+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017613g0002.1 protein ; (*GB) gi|296082572|emb|CBI21577.3| (e_value=1e-89) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SD00|MSSP3_ARATH (e_value=2e-87) Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1;; (*TAIR) AT3G51490.1 (e_value=2e-88) | Symbols: TMT3 | tonoplast monosaccharide transporter3 | chr3:19105018-19107562 REVERSE LENGTH=729;; (*ITAG) Solyc03g032040.2.1 (e_value=3e-104) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00017871g0002.1 protein ; (*GB) gi|255689401|gb|ACU30052.1| (e_value=4e-28) cystathionine beta-lyase, partial [Glycine max];; (*SWP) sp|P53780|METC_ARATH (e_value=9e-24) Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1;; (*TAIR) AT3G57050.1 (e_value=7e-25) | Symbols: CBL | cystathionine beta-lyase | chr3:21111939-21114521 REVERSE LENGTH=464;; (*ITAG) Solyc10g079720.1.1 (e_value=5e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60540899-60547437 transcript_region:SL2.40ch10:60540899..60547437- go_terms:GO:0006520,GO:0071266,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- C1PDC6_BACCO); contains Interpro domain(s) IPR006238 Cystathionine beta-lyase, eukaryotic "; GO:0006520,GO:0071266,GO:0030170 NbS00051056g0001.1 protein NbC26031239g0001.1 protein NbS00000447g0002.1 protein ; (*GB) gi|224141469|ref|XP_002324094.1| (e_value=2e-48) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q8GWT1|GAUTE_ARATH (e_value=5e-48) Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1;; (*TAIR) AT5G15470.1 (e_value=4e-49) | Symbols: GAUT14 | galacturonosyltransferase 14 | chr5:5021433-5024168 REVERSE LENGTH=532;; (*ITAG) Solyc03g013630.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:6576713-6582582 transcript_region:SL2.40ch03:6576713..6582582+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00027232g0002.1 protein ; (*GB) gi|325094793|gb|EGC48103.1| (e_value=3e-16) RNase H domain-containing protein [Ajellomyces capsulatus H88]; NbS00000268g0006.1 protein NbS00019312g0001.1 protein NbS00019312g0002.1 protein NbS00019312g0003.1 protein NbS00039859g0001.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=4e-17) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc09g011950.1.1 (e_value=7e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:5229051-5233625 transcript_region:SL2.40ch09:5229051..5233625- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00041391g0001.1 protein NbS00036293g0002.1 protein NbS00002497g0106.1 protein NbS00002497g0107.1 protein NbS00002497g0203.1 protein NbS00025654g0001.1 protein NbS00016935g0001.1 protein NbS00005024g0002.1 protein ; (*ITAG) Solyc09g007340.2.1 (e_value=3e-55) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00005024g0004.1 protein ; (*GB) gi|224068661|ref|XP_002326168.1| (e_value=4e-120) predicted protein [Populus trichocarpa];; (*TAIR) AT3G09670.2 (e_value=1e-65) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr3:2966637-2968817 FORWARD LENGTH=726;; (*ITAG) Solyc09g007340.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:936911-949248 transcript_region:SL2.40ch09:936911..949248+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00045835g0001.1 protein NbS00006821g0007.1 protein NbS00034635g0001.1 protein ; (*GB) gi|257831431|gb|ACV71016.1| (e_value=4e-28) UPA16 [Capsicum annuum];; (*ITAG) Solyc03g097870.2.1 (e_value=5e-32) genomic_reference:SL2.40ch03 gene_region:53636549-53638995 transcript_region:SL2.40ch03:53636549..53638995+ go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00035123g0001.1 protein ; (*GB) gi|255573907|ref|XP_002527872.1| (e_value=2e-101) ceramidase, putative [Ricinus communis];; (*SWP) sp|Q0JL46|NCASE_ORYSJ (e_value=1e-80) Neutral ceramidase OS=Oryza sativa subsp. japonica GN=Os01g0624000 PE=1 SV=1;; (*TAIR) AT5G58980.1 (e_value=6e-83) | Symbols: | Neutral/alkaline non-lysosomal ceramidase | chr5:23811449-23814395 REVERSE LENGTH=733;; (*ITAG) Solyc03g006140.2.1 (e_value=1e-117) genomic_reference:SL2.40ch03 gene_region:791650-799108 transcript_region:SL2.40ch03:791650..799108- go_terms:GO:0017040 functional_description:"Neutral ceramidase (AHRD V1 **** A9YFM2_WHEAT); contains Interpro domain(s) IPR006823 Neutral/alkaline nonlysosomal ceramidase "; GO:0017040 NbS00009283g0002.1 protein ; (*ITAG) Solyc03g122220.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:64164381-64164724 transcript_region:SL2.40ch03:64164381..64164724- go_terms:GO:0008270 functional_description:"GRF zinc finger containing protein (AHRD V1 *-*- Q2A9I2_BRAOL); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00001212g0001.1 protein ; (*GB) gi|189032255|gb|ACD75053.1| (e_value=0.0) Ser/Thr protein kinase [Solanum chacoense];; (*SWP) sp|Q86IX1|DST1_DICDI (e_value=3e-33) Serine/threonine-protein kinase dst1 OS=Dictyostelium discoideum GN=dst1 PE=3 SV=1;; (*TAIR) AT1G69220.1 (e_value=9e-112) | Symbols: SIK1 | Protein kinase superfamily protein | chr1:26020298-26026119 REVERSE LENGTH=836;; (*ITAG) Solyc05g012130.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:5333154-5343576 transcript_region:SL2.40ch05:5333154..5343576- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000845g0002.1 protein NbS00000845g0003.1 protein NbS00000845g0005.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=7e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbC23246574g0001.1 protein ; (*GB) gi|147843260|emb|CAN80537.1| (e_value=4e-31) hypothetical protein VITISV_003812 [Vitis vinifera];; (*SWP) sp|P50346|RLA0_SOYBN (e_value=8e-32) 60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1;; (*TAIR) AT2G40010.1 (e_value=5e-31) | Symbols: | Ribosomal protein L10 family protein | chr2:16708578-16710448 REVERSE LENGTH=317;; (*ITAG) Solyc09g091520.1.1 (e_value=9e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:66128811-66131811 transcript_region:SL2.40ch09:66128811..66131811+ go_terms:GO:0005515,GO:0005507 functional_description:"60S acidic ribosomal protein P0 (AHRD V1 ***- D7LEE5_ARALY); contains Interpro domain(s) IPR001790 Ribosomal protein L10 "; GO:0005515,GO:0005507 NbS00051655g0002.1 protein NbS00034934g0001.1 protein NbS00018321g0001.1 protein NbS00016882g0007.1 protein NbS00053547g0001.1 protein NbS00012241g0003.1 protein NbS00020701g0004.1 protein NbS00020701g0005.1 protein ; (*GB) gi|12322948|gb|AAG51464.1|AC069160_10 (e_value=3e-15) gypsy/Ty3 element polyprotein, putative [Arabidopsis thaliana]; NbS00004683g0001.1 protein NbS00013081g0102.1 protein NbS00042423g0001.1 protein NbS00010314g0001.1 protein ; (*GB) gi|356514216|ref|XP_003525802.1| (e_value=8e-20) PREDICTED: monocopper oxidase-like protein SKU5-like [Glycine max];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=1e-20) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT4G12420.2 (e_value=7e-22) | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587;; (*ITAG) Solyc08g079090.2.1 (e_value=1e-27) genomic_reference:SL2.40ch08 gene_region:59901779-59905784 transcript_region:SL2.40ch08:59901779..59905784+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00034017g0001.1 protein ; (*GB) gi|224114936|ref|XP_002316897.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q94BM7|SPA4_ARATH (e_value=3e-27) Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1;; (*TAIR) AT1G53090.2 (e_value=2e-28) | Symbols: SPA4 | SPA1-related 4 | chr1:19783748-19786690 FORWARD LENGTH=794;; (*ITAG) Solyc07g063120.2.1 (e_value=2e-32) genomic_reference:SL2.40ch07 gene_region:62912031-62920927 transcript_region:SL2.40ch07:62912031..62920927- go_terms:GO:0042802 functional_description:"WD-40 repeat protein (AHRD V1 *--- B7KCU4_CYAP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00034017g0004.1 protein NbS00035086g0001.1 protein NbS00005574g0001.1 protein ; (*GB) gi|147856666|emb|CAN80314.1| (e_value=4e-57) hypothetical protein VITISV_020759 [Vitis vinifera];; (*SWP) sp|Q84KJ6|AMT31_ORYSJ (e_value=9e-41) Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1;; (*TAIR) AT2G38290.1 (e_value=9e-39) | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter 2 | chr2:16039672-16042291 REVERSE LENGTH=475;; (*ITAG) Solyc08g067080.1.1 (e_value=2e-77) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:53203915-53206113 transcript_region:SL2.40ch08:53203915..53206113+ go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** B9GS88_POPTR); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00006318g0001.1 protein ; (*GB) gi|16904226|gb|AAL30820.1|AF435452_1 (e_value=2e-48) calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum];; (*SWP) sp|P53681|CRK_DAUCA (e_value=4e-39) CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1;; (*TAIR) AT3G50530.1 (e_value=4e-40) | Symbols: CRK | CDPK-related kinase | chr3:18753833-18756487 FORWARD LENGTH=601;; (*ITAG) Solyc02g090510.2.1 (e_value=2e-44) genomic_reference:SL2.40ch02 gene_region:46628868-46634108 transcript_region:SL2.40ch02:46628868..46634108+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase-like (AHRD V1 **** Q9LET1_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00036186g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=5e-18) RNase H family protein [Solanum demissum]; NbS00036186g0003.1 protein ; (*ITAG) Solyc04g025130.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:18068631-18069119 transcript_region:SL2.40ch04:18068631..18069119+ functional_description:"Unknown Protein (AHRD V1)"; NbS00025995g0001.1 protein ; (*GB) gi|225425094|ref|XP_002272175.1| (e_value=1e-45) PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like [Vitis vinifera];; (*SWP) sp|Q9C6C3|AGD2_ARATH (e_value=1e-38) ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1;; (*TAIR) AT1G60860.1 (e_value=1e-39) | Symbols: AGD2 | ARF-GAP domain 2 | chr1:22401244-22407639 REVERSE LENGTH=776;; (*ITAG) Solyc04g008660.2.1 (e_value=9e-82) genomic_reference:SL2.40ch04 gene_region:2289220-2305938 transcript_region:SL2.40ch04:2289220..2305938+ go_terms:GO:0032312,GO:0005737 functional_description:"Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 (AHRD V1 *--- AGAP1_XENLA); contains Interpro domain(s) IPR001164 Arf GTPase activating protein "; GO:0032312,GO:0005737 NbS00019565g0001.1 protein NbS00019565g0002.1 protein ; (*GB) gi|297800258|ref|XP_002868013.1| (e_value=7e-53) AT4g18060/F15J5_30 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G18060.1 (e_value=3e-55) | Symbols: | SH3 domain-containing protein | chr4:10027668-10029662 REVERSE LENGTH=351;; (*ITAG) Solyc02g071330.2.1 (e_value=3e-67) genomic_reference:SL2.40ch02 gene_region:35391296-35396537 transcript_region:SL2.40ch02:35391296..35396537+ go_terms:GO:0030276 functional_description:"SH3 domain-containing guanine exchange factor (AHRD V1 *--- SGEF_HUMAN); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00022997g0001.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=3e-20) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc07g056380.1.1 (e_value=6e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:61569954-61570601 transcript_region:SL2.40ch07:61569954..61570601- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HRG4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00057733g0001.1 protein ; (*GB) gi|340248748|dbj|BAK52672.1| (e_value=6e-39) cytokinin oxidase [Petunia x hybrida];; (*SWP) sp|Q9LTS3|CKX3_ARATH (e_value=3e-18) Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1;; (*TAIR) AT5G56970.1 (e_value=2e-19) | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048245 REVERSE LENGTH=523;; (*ITAG) Solyc12g008900.1.1 (e_value=4e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2209297-2213073 transcript_region:SL2.40ch12:2209297..2213073- go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 2 (AHRD V1 ***- C0LPA7_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00008747g0001.1 protein ; (*GB) gi|224122614|ref|XP_002318880.1| (e_value=5e-46) predicted protein [Populus trichocarpa];; (*SWP) sp|P17407|21KD_DAUCA (e_value=2e-30) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT4G25250.1 (e_value=2e-36) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr4:12934632-12935231 FORWARD LENGTH=199;; (*ITAG) Solyc03g083710.1.1 (e_value=9e-99) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47198994-47199581 transcript_region:SL2.40ch03:47198994..47199581- go_terms:GO:0030599 functional_description:"Pectinesterase/pectinesterase inhibitor U1 (AHRD V1 **-- PMEU1_SOLLC); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00008747g0003.1 protein ; (*GB) gi|255539739|ref|XP_002510934.1| (e_value=6e-41) 21 kDa protein precursor, putative [Ricinus communis];; (*SWP) sp|P17407|21KD_DAUCA (e_value=8e-28) 21 kDa protein OS=Daucus carota PE=2 SV=1;; (*TAIR) AT5G62360.1 (e_value=3e-28) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25040699-25041310 FORWARD LENGTH=203;; (*ITAG) Solyc03g083720.1.1 (e_value=2e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:47202120-47202749 transcript_region:SL2.40ch03:47202120..47202749- go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- C0PST8_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00005572g0102.1 protein NbC26022979g0001.1 protein ; (*GB) gi|297816616|ref|XP_002876191.1| (e_value=4e-18) hypothetical protein ARALYDRAFT_485693 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G53180.1 (e_value=3e-19) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc01g056450.1.1 (e_value=3e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47074232-47077183 transcript_region:SL2.40ch01:47074232..47077183+ go_terms:GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 ***- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0006807,GO:0003824 NbS00028162g0003.1 protein NbS00013304g0101.1 protein NbS00013304g0102.1 protein NbS00005141g0001.1 protein ; (*ITAG) Solyc08g079250.2.1 (e_value=2e-11) genomic_reference:SL2.40ch08 gene_region:60025771-60033618 transcript_region:SL2.40ch08:60025771..60033618+ go_terms:GO:0008289 functional_description:"Lipid transfer protein (AHRD V1 *-** O22110_PICAB); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289 NbS00016428g0002.1 protein ; (*GB) gi|341606697|gb|AEK83451.1| (e_value=1e-17) At5g60700-like protein [Capsella grandiflora];; (*TAIR) AT5G60700.1 (e_value=1e-18) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=7e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00002678g0001.1 protein NbS00035929g0002.1 protein NbS00054668g0001.1 protein NbS00026263g0001.1 protein NbS00026263g0004.1 protein NbS00006968g0005.1 protein ; (*GB) gi|255551699|ref|XP_002516895.1| (e_value=7e-44) AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q944A6|SNF4_ARATH (e_value=8e-40) Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1;; (*TAIR) AT1G09020.1 (e_value=6e-41) | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose nonfermenting 4 | chr1:2900149-2904212 REVERSE LENGTH=487;; (*ITAG) Solyc01g067590.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:68779437-68791512 transcript_region:SL2.40ch01:68779437..68791512- go_terms:GO:0019901,GO:0004679 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0019901,GO:0004679 NbS00062251g0002.1 protein NbC25496684g0001.1 protein ; (*GB) gi|225434447|ref|XP_002277764.1| (e_value=1e-122) PREDICTED: cation/H(+) antiporter 24 [Vitis vinifera];; (*SWP) sp|Q1HDT2|CHX24_ARATH (e_value=5e-74) Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2;; (*TAIR) AT5G37060.1 (e_value=4e-75) | Symbols: ATCHX24, CHX24 | cation/H+ exchanger 24 | chr5:14642741-14645414 REVERSE LENGTH=859;; (*ITAG) Solyc06g009240.2.1 (e_value=6e-51) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00018816g0001.1 protein NbS00007852g0001.1 protein NbS00027429g0001.1 protein NbS00002365g0004.1 protein NbS00010509g0001.1 protein NbS00010509g0003.1 protein NbS00023965g0002.1 protein NbS00014255g0002.1 protein NbS00035658g0001.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=1e-18) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00020819g0006.1 protein ; (*GB) gi|255567689|ref|XP_002524823.1| (e_value=1e-52) multicopper oxidase, putative [Ricinus communis];; (*SWP) sp|Q00624|ASOL_BRANA (e_value=2e-28) L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1;; (*TAIR) AT1G76160.1 (e_value=2e-40) | Symbols: sks5 | SKU5 similar 5 | chr1:28578211-28581020 REVERSE LENGTH=541;; (*ITAG) Solyc07g052240.2.1 (e_value=1e-53) genomic_reference:SL2.40ch07 gene_region:58050410-58054055 transcript_region:SL2.40ch07:58050410..58054055- go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00037869g0001.1 protein ; (*GB) gi|255553329|ref|XP_002517706.1| (e_value=8e-39) WD-repeat protein, putative [Ricinus communis];; (*TAIR) AT3G42660.1 (e_value=8e-27) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:14751280-14755701 FORWARD LENGTH=953;; (*ITAG) Solyc03g114690.2.1 (e_value=9e-54) genomic_reference:SL2.40ch03 gene_region:58641516-58647305 transcript_region:SL2.40ch03:58641516..58647305- go_terms:GO:0000166 functional_description:"Wd-40 repeat-containing protein (AHRD V1 *--- B8C836_THAPS); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00014435g0001.1 protein NbS00025991g0001.1 protein NbS00026745g0001.1 protein NbS00004203g0001.1 protein NbS00037349g0001.1 protein NbS00049354g0002.1 protein NbC24366752g0001.1 protein ; (*GB) gi|255584617|ref|XP_002533032.1| (e_value=9e-69) multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis];; (*SWP) sp|Q9LK64|AB3C_ARATH (e_value=3e-63) ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1;; (*TAIR) AT3G13080.4 (e_value=2e-64) | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4197606-4201250 REVERSE LENGTH=1120;; (*ITAG) Solyc07g065320.2.1 (e_value=8e-80) genomic_reference:SL2.40ch07 gene_region:64353577-64359178 transcript_region:SL2.40ch07:64353577..64359178- go_terms:GO:0015431 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9GJX7_POPTR); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0015431 NbS00034109g0001.1 protein ; (*GB) gi|313586603|gb|ADR71312.1| (e_value=3e-29) hypothetical protein 33 [Hevea brasiliensis];; (*TAIR) AT1G08480.1 (e_value=2e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:2684340-2685395 FORWARD LENGTH=142;; (*ITAG) Solyc11g071790.1.1 (e_value=3e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52237076-52240112 transcript_region:SL2.40ch11:52237076..52240112- functional_description:"Unknown Protein (AHRD V1)"; NbC24430580g0001.1 protein ; (*GB) gi|5931765|emb|CAB56619.1| (e_value=4e-46) phragmoplastin [Nicotiana tabacum];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=3e-40) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.3 (e_value=6e-38) | Symbols: DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=604;; (*ITAG) Solyc01g095970.2.1 (e_value=6e-49) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00053375g0001.1 protein ; (*GB) gi|357445631|ref|XP_003593093.1| (e_value=1e-25) Transmembrane protein 87B [Medicago truncatula];; (*TAIR) AT2G01070.1 (e_value=5e-25) | Symbols: | Lung seven transmembrane receptor family protein | chr2:75596-77625 FORWARD LENGTH=496;; (*ITAG) Solyc10g045600.1.1 (e_value=6e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:30297711-30304480 transcript_region:SL2.40ch10:30297711..30304480+ go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00014557g0001.1 protein NbS00009225g0002.1 protein NbS00027548g0001.1 protein NbS00005268g0001.1 protein NbS00008906g0002.1 protein NbS00026221g0001.1 protein NbS00031071g0001.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=2e-33) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=2e-13) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515;; (*ITAG) Solyc05g021350.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00005266g0009.1 protein ; (*GB) gi|359495104|ref|XP_002263133.2| (e_value=1e-34) PREDICTED: probable serine/threonine-protein kinase At1g18390-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=6e-14) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G70250.1 (e_value=6e-19) | Symbols: | receptor serine/threonine kinase, putative | chr1:26452975-26456088 FORWARD LENGTH=799;; (*ITAG) Solyc02g081500.2.1 (e_value=3e-34) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016257g0102.1 protein NbS00009582g0201.1 protein NbS00040357g0001.1 protein ; (*GB) gi|225441973|ref|XP_002271118.1| (e_value=4e-117) PREDICTED: pumilio homolog 23-like [Vitis vinifera];; (*SWP) sp|Q9C552|PUM23_ARATH (e_value=5e-93) Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1;; (*TAIR) AT1G72320.1 (e_value=4e-94) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232580 REVERSE LENGTH=753;; (*ITAG) Solyc03g123640.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00015004g0003.1 protein NbS00015765g0001.1 protein NbS00022663g0001.1 protein ; (*ITAG) Solyc01g105020.2.1 (e_value=7e-38) genomic_reference:SL2.40ch01 gene_region:85080428-85087099 transcript_region:SL2.40ch01:85080428..85087099- go_terms:GO:0003824 functional_description:"Phosphatase PTC7 homolog (AHRD V1 *-*- C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0003824 NbS00019840g0101.1 protein NbS00018327g0002.1 protein NbS00017820g0001.1 protein NbS00045234g0002.1 protein ; (*GB) gi|359479228|ref|XP_002274007.2| (e_value=1e-30) PREDICTED: serine/threonine-protein kinase Nek5-like [Vitis vinifera];; (*SWP) sp|Q0WPH8|NEK5_ARATH (e_value=5e-24) Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana GN=NEK5 PE=1 SV=1;; (*TAIR) AT3G44200.1 (e_value=4e-25) | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis, gene A)-related 6 | chr3:15906788-15911365 FORWARD LENGTH=956;; (*ITAG) Solyc01g009300.2.1 (e_value=4e-48) genomic_reference:SL2.40ch01 gene_region:3337312-3344788 transcript_region:SL2.40ch01:3337312..3344788- go_terms:GO:0005515,GO:0016301 functional_description:"Serine/threonine kinase (AHRD V1 *-** C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00015705g0002.1 protein ; (*GB) gi|357511469|ref|XP_003626023.1| (e_value=5e-34) Replication factor A protein [Medicago truncatula];; (*TAIR) AT2G05642.1 (e_value=8e-20) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr2:2098253-2100867 REVERSE LENGTH=532;; (*ITAG) Solyc12g038200.1.1 (e_value=6e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34575109-34580812 transcript_region:SL2.40ch12:34575109..34580812- go_terms:GO:0030117,GO:0005488 functional_description:"Coatomer subunit gamma (AHRD V1 *-*- B6SV32_MAIZE); contains Interpro domain(s) IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal "; GO:0030117,GO:0005488 NbS00017461g0003.1 protein ; (*GB) gi|224091935|ref|XP_002309406.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C826|ABA2_ARATH (e_value=3e-32) Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1;; (*TAIR) AT1G52340.1 (e_value=2e-33) | Symbols: ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19489997-19491527 REVERSE LENGTH=285;; (*ITAG) Solyc10g083180.1.1 (e_value=3e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62367751-62373732 transcript_region:SL2.40ch10:62367751..62373732- go_terms:GO:0010301,GO:0043621 functional_description:"Xanthoxin dehydrogenase (AHRD V1 **-* ABA2_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0010301,GO:0043621 NbS00055931g0002.1 protein NbC23743081g0001.1 protein ; (*GB) gi|241897455|gb|ACS70946.1| (e_value=5e-50) feruloyl transferase [Solanum tuberosum];; (*SWP) sp|Q94CD1|HHT1_ARATH (e_value=6e-48) Omega-hydroxypalmitate O-feruloyl transferase OS=Arabidopsis thaliana GN=HHT1 PE=1 SV=1;; (*TAIR) AT5G41040.2 (e_value=3e-49) | Symbols: | HXXXD-type acyl-transferase family protein | chr5:16431582-16433086 FORWARD LENGTH=441;; (*ITAG) Solyc03g097500.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:53285695-53287618 transcript_region:SL2.40ch03:53285695..53287618+ go_terms:GO:0050734,GO:0010327 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IFG0_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0050734,GO:0010327 NbS00027676g0001.1 protein ; (*GB) gi|147768910|emb|CAN75884.1| (e_value=7e-65) hypothetical protein VITISV_024457 [Vitis vinifera];; (*TAIR) AT2G44420.1 (e_value=4e-60) | Symbols: | protein N-terminal asparagine amidohydrolase family protein | chr2:18330568-18332696 FORWARD LENGTH=347;; (*ITAG) Solyc01g073930.2.1 (e_value=8e-89) genomic_reference:SL2.40ch01 gene_region:70515874-70522211 transcript_region:SL2.40ch01:70515874..70522211+ go_terms:GO:0008418 functional_description:"N-terminal asparagine amidohydrolase family protein (AHRD V1 **** D7LLL3_ARALY)"; GO:0008418 NbS00051197g0001.1 protein NbS00055109g0001.1 protein ; (*GB) gi|297740159|emb|CBI30341.3| (e_value=3e-54) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G11560.1 (e_value=8e-43) | Symbols: | LETM1-like protein | chr3:3639553-3643450 FORWARD LENGTH=619;; (*ITAG) Solyc09g010280.2.1 (e_value=2e-103) genomic_reference:SL2.40ch09 gene_region:3647431-3666876 transcript_region:SL2.40ch09:3647431..3666876- functional_description:"Os08g0482100 protein (Fragment) (AHRD V1 **-- Q0J4Y4_ORYSJ); contains Interpro domain(s) IPR011685 LETM1-like "; NbS00038856g0002.1 protein ; (*GB) gi|224118926|ref|XP_002331338.1| (e_value=9e-15) predicted protein [Populus trichocarpa];; (*TAIR) AT1G43760.1 (e_value=5e-13) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbC24653948g0001.1 protein NbS00044922g0001.1 protein ; (*GB) gi|359473314|ref|XP_002267856.2| (e_value=3e-20) PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Vitis vinifera];; (*SWP) sp|O04539|SNL4_ARATH (e_value=3e-19) Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3;; (*TAIR) AT1G70060.1 (e_value=2e-20) | Symbols: SNL4 | SIN3-like 4 | chr1:26383789-26389568 FORWARD LENGTH=1326;; (*ITAG) Solyc02g087360.2.1 (e_value=2e-23) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00004835g0102.1 protein NbS00001744g0001.1 protein NbC25523132g0001.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=6e-14) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00058672g0001.1 protein ; (*GB) gi|356510082|ref|XP_003523769.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max];; (*SWP) sp|Q3EDF8|PPR28_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1;; (*TAIR) AT1G09900.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=598;; (*ITAG) Solyc07g066390.1.1 (e_value=8e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65059324-65061057 transcript_region:SL2.40ch07:65059324..65061057- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KVY0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00009474g0002.1 protein NbS00018563g0001.1 protein ; (*GB) gi|1354849|gb|AAB02006.1| (e_value=1e-90) epoxide hydrolase [Nicotiana tabacum];; (*SWP) sp|P80299|HYES_RAT (e_value=3e-30) Epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1;; (*TAIR) AT4G02340.1 (e_value=7e-40) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:1035722-1037403 FORWARD LENGTH=324;; (*ITAG) Solyc02g078570.2.1 (e_value=3e-55) genomic_reference:SL2.40ch02 gene_region:37812462-37814771 transcript_region:SL2.40ch02:37812462..37814771- go_terms:GO:0004301 functional_description:"Epoxide hydrolase 3 (AHRD V1 **** D8L7V9_PRUPE); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0004301 NbS00019385g0001.1 protein ; (*GB) gi|255561552|ref|XP_002521786.1| (e_value=3e-23) Disease resistance protein RPP13, putative [Ricinus communis];; (*SWP) sp|P0C8S1|RP8L2_ARATH (e_value=4e-20) Probable disease resistance RPP8-like protein 2 OS=Arabidopsis thaliana GN=RPP8L2 PE=1 SV=1;; (*TAIR) AT1G53350.1 (e_value=3e-22) | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927;; (*ITAG) Solyc03g005650.1.1 (e_value=6e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:465276-467974 transcript_region:SL2.40ch03:465276..467974- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00042705g0001.1 protein NbS00003219g0001.1 protein NbC23469802g0001.1 protein ; (*GB) gi|359478773|ref|XP_002283298.2| (e_value=1e-26) PREDICTED: callose synthase 3-like [Vitis vinifera];; (*SWP) sp|Q9LXT9|CALS3_ARATH (e_value=2e-27) Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3;; (*TAIR) AT5G13000.1 (e_value=2e-28) | Symbols: ATGSL12, gsl12 | glucan synthase-like 12 | chr5:4110445-4121202 REVERSE LENGTH=1955;; (*ITAG) Solyc01g073750.2.1 (e_value=8e-38) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbC25065720g0001.1 protein ; (*GB) gi|224127298|ref|XP_002329243.1| (e_value=5e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8L7E5|WIT1_ARATH (e_value=3e-24) WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2;; (*TAIR) AT5G11390.1 (e_value=2e-25) | Symbols: WIT1 | WPP domain-interacting protein 1 | chr5:3633971-3636418 FORWARD LENGTH=703;; (*ITAG) Solyc02g065660.2.1 (e_value=5e-52) genomic_reference:SL2.40ch02 gene_region:31386857-31391603 transcript_region:SL2.40ch02:31386857..31391603- go_terms:GO:0042802 functional_description:"WPP domain-interacting tail-anchored protein 1 (AHRD V1 ***- WIT1_ARATH)"; GO:0042802 NbS00027935g0001.1 protein NbS00048919g0001.1 protein NbS00015050g0001.1 protein NbS00004358g0004.1 protein NbS00007296g0001.1 protein NbC23387512g0001.1 protein ; (*GB) gi|15778156|dbj|BAB68528.1| (e_value=1e-44) 14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|P93343|1433C_TOBAC (e_value=2e-45) 14-3-3-like protein C OS=Nicotiana tabacum PE=1 SV=1;; (*TAIR) AT1G78300.1 (e_value=2e-40) | Symbols: GRF2, 14-3-3OMEGA, GF14 OMEGA | general regulatory factor 2 | chr1:29461883-29463052 FORWARD LENGTH=259;; (*ITAG) Solyc04g074510.2.1 (e_value=2e-45) genomic_reference:SL2.40ch04 gene_region:58094139-58096300 transcript_region:SL2.40ch04:58094139..58096300+ go_terms:GO:0050815 functional_description:"14-3-3 protein beta/alpha-B (AHRD V1 **-- 143BB_XENLA); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00001564g0001.1 protein NbS00001564g0004.1 protein ; (*GB) gi|57013914|ref|YP_173387.1| (e_value=2e-28) hypothetical protein NitaMp041 [Nicotiana tabacum]; NbS00003104g0001.1 protein NbS00003104g0004.1 protein NbS00003104g0005.1 protein NbS00014817g0002.1 protein NbC23718152g0001.1 protein ; (*GB) gi|147790107|emb|CAN61039.1| (e_value=3e-33) hypothetical protein VITISV_018673 [Vitis vinifera];; (*TAIR) AT4G36630.1 (e_value=2e-31) | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000;; (*ITAG) Solyc07g056660.2.1 (e_value=2e-39) genomic_reference:SL2.40ch07 gene_region:61781736-61792185 transcript_region:SL2.40ch07:61781736..61792185+ go_terms:GO:0046332,GO:0005160 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 *--* TGFA1_HUMAN); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0046332,GO:0005160 NbS00009286g0003.1 protein NbS00005638g0201.1 protein NbS00005638g0203.1 protein NbS00017721g0001.1 protein NbS00006342g0001.1 protein NbS00014311g0001.1 protein NbS00014311g0002.1 protein NbS00052576g0001.1 protein NbS00000746g0001.1 protein NbS00006434g0002.1 protein NbS00015281g0001.1 protein ; (*GB) gi|224084324|ref|XP_002307259.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT3G50620.1 (e_value=5e-33) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18784993-18786747 REVERSE LENGTH=340;; (*ITAG) Solyc02g090620.2.1 (e_value=9e-42) genomic_reference:SL2.40ch02 gene_region:46742319-46745553 transcript_region:SL2.40ch02:46742319..46745553- functional_description:"Unknown Protein (AHRD V1)"; NbS00049787g0002.1 protein NbS00015848g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-26) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=5e-14) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426;; (*ITAG) Solyc07g037900.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:41420885-41422318 transcript_region:SL2.40ch07:41420885..41422318+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00010149g0001.1 protein NbS00004403g0001.1 protein NbS00032075g0003.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-22) hypothetical protein [Nicotiana tabacum]; NbS00012116g0002.1 protein NbS00024189g0001.1 protein NbS00024189g0002.1 protein NbS00024189g0003.1 protein NbS00024189g0004.1 protein NbS00004994g0001.1 protein ; (*GB) gi|42540596|gb|AAS19201.1| (e_value=2e-27) GAL83 [Nicotiana attenuata];; (*ITAG) Solyc12g099970.1.1 (e_value=8e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65242252-65245386 transcript_region:SL2.40ch12:65242252..65245386+ go_terms:GO:0019901 functional_description:"5-amp-activated protein kinase beta subunit (AHRD V1 **** Q17IU7_AEDAE); contains Interpro domain(s) IPR006828 5-AMP-activated protein kinase, beta subunit, complex-interacting region "; GO:0019901 NbS00002715g0005.1 protein NbS00002715g0007.1 protein NbS00017081g0001.1 protein ; (*GB) gi|147833287|emb|CAN77475.1| (e_value=3e-52) hypothetical protein VITISV_041111 [Vitis vinifera];; (*SWP) sp|Q9M9X9|PPR18_ARATH (e_value=3e-49) Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1;; (*TAIR) AT1G06710.1 (e_value=3e-50) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2056999-2060242 REVERSE LENGTH=997;; (*ITAG) Solyc02g081250.1.1 (e_value=2e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00029694g0001.1 protein NbS00050854g0001.1 protein NbS00011637g0001.1 protein NbS00060006g0001.1 protein NbS00011047g0001.1 protein NbS00046182g0001.1 protein NbS00022813g0001.1 protein NbS00000159g0102.1 protein NbS00023607g0002.1 protein NbS00023607g0003.1 protein ; (*GB) gi|147802448|emb|CAN70400.1| (e_value=1e-11) hypothetical protein VITISV_023215 [Vitis vinifera]; NbS00028077g0001.1 protein ; (*GB) gi|224124628|ref|XP_002319379.1| (e_value=6e-18) f-box family protein [Populus trichocarpa];; (*TAIR) AT5G02700.1 (e_value=4e-11) | Symbols: | F-box/RNI-like superfamily protein | chr5:609381-611679 REVERSE LENGTH=456;; (*ITAG) Solyc03g121290.2.1 (e_value=5e-19) genomic_reference:SL2.40ch03 gene_region:63494989-63497727 transcript_region:SL2.40ch03:63494989..63497727+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00028077g0002.1 protein NbS00015252g0001.1 protein NbS00015252g0002.1 protein NbS00023196g0001.1 protein NbS00023196g0002.1 protein NbS00050718g0002.1 protein ; (*GB) gi|255697190|emb|CAR92295.1| (e_value=1e-20) relative to APETALA2 1 [Solanum tuberosum subsp. andigenum];; (*ITAG) Solyc10g084340.1.1 (e_value=8e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63251955-63255101 transcript_region:SL2.40ch10:63251955..63255101- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00050718g0003.1 protein ; (*ITAG) Solyc01g007140.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00046569g0002.1 protein ; (*GB) gi|359495451|ref|XP_002274621.2| (e_value=5e-43) PREDICTED: uncharacterized protein LOC100263200 [Vitis vinifera];; (*SWP) sp|Q8RXY0|Y3333_ARATH (e_value=2e-40) Probable inactive protein kinase At3g63330 OS=Arabidopsis thaliana GN=At3g63330 PE=2 SV=1;; (*TAIR) AT3G63340.1 (e_value=3e-40) | Symbols: | Protein phosphatase 2C family protein | chr3:23392181-23397999 REVERSE LENGTH=1041;; (*ITAG) Solyc09g065650.2.1 (e_value=6e-54) genomic_reference:SL2.40ch09 gene_region:59424149-59448182 transcript_region:SL2.40ch09:59424149..59448182- go_terms:GO:0006468,GO:0003824 functional_description:"Protein phosphatase 1L-like protein (AHRD V1 *--- D0NIG5_PHYIN); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0006468,GO:0003824 NbS00024701g0003.1 protein NbS00021132g0101.1 protein NbS00020555g0001.1 protein ; (*ITAG) Solyc11g056500.1.1 (e_value=9e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43173486-43174103 transcript_region:SL2.40ch11:43173486..43174103- functional_description:"Photosystem Q(B) protein (AHRD V1 *-*- B6VJV1_VITVI)"; NbS00002443g0002.1 protein NbS00002443g0103.1 protein NbS00002443g0203.1 protein NbS00001924g0001.1 protein NbS00020952g0001.1 protein NbS00056548g0001.1 protein ; (*GB) gi|147839111|emb|CAN68092.1| (e_value=9e-53) hypothetical protein VITISV_012749 [Vitis vinifera];; (*TAIR) AT5G62840.1 (e_value=2e-50) | Symbols: | Phosphoglycerate mutase family protein | chr5:25228296-25229672 REVERSE LENGTH=297;; (*ITAG) Solyc03g114250.2.1 (e_value=2e-68) genomic_reference:SL2.40ch03 gene_region:58333902-58335830 transcript_region:SL2.40ch03:58333902..58335830+ go_terms:GO:0003824 functional_description:"Phosphoglycerate mutase family protein (AHRD V1 **-- B6TTB7_MAIZE); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0003824 NbS00028419g0001.1 protein NbS00031759g0001.1 protein NbS00032207g0001.1 protein NbS00003709g0002.1 protein ; (*GB) gi|297830352|ref|XP_002883058.1| (e_value=3e-75) hypothetical protein ARALYDRAFT_479214 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=8e-16) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT3G17380.1 (e_value=2e-72) | Symbols: | TRAF-like family protein | chr3:5950240-5952124 FORWARD LENGTH=309;; (*ITAG) Solyc04g008530.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2154141-2155727 transcript_region:SL2.40ch04:2154141..2155727+ functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00003709g0103.1 protein NbS00021116g0001.1 protein ; (*GB) gi|225424926|ref|XP_002277342.1| (e_value=2e-15) PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Vitis vinifera];; (*TAIR) AT1G69800.2 (e_value=1e-13) | Symbols: | Cystathionine beta-synthase (CBS) protein | chr1:26274416-26276325 REVERSE LENGTH=476;; (*ITAG) Solyc01g010700.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:5726264-5728807 transcript_region:SL2.40ch01:5726264..5728807- functional_description:"AKIN gamma (AHRD V1 **-- B4FX20_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00028054g0002.1 protein NbS00023041g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-45) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00023041g0002.1 protein ; (*GB) gi|224062353|ref|XP_002300821.1| (e_value=4e-42) sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Populus trichocarpa];; (*SWP) sp|O04289|SUT32_ARATH (e_value=2e-31) Sulfate transporter 3.2 OS=Arabidopsis thaliana GN=SULTR3;2 PE=2 SV=1;; (*TAIR) AT4G02700.1 (e_value=1e-32) | Symbols: SULTR3;2 | sulfate transporter 3;2 | chr4:1189062-1193325 FORWARD LENGTH=646;; (*ITAG) Solyc09g065560.2.1 (e_value=2e-57) genomic_reference:SL2.40ch09 gene_region:59290557-59299087 transcript_region:SL2.40ch09:59290557..59299087- go_terms:GO:0015116 functional_description:"Sulfate transporter (AHRD V1 **** D7LTZ8_ARALY); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015116 NbS00024266g0003.1 protein ; (*GB) gi|255539380|ref|XP_002510755.1| (e_value=1e-59) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*TAIR) AT1G76630.2 (e_value=5e-52) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1168;; (*ITAG) Solyc04g082980.1.1 (e_value=6e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024213g0002.1 protein NbS00033977g0001.1 protein ; (*GB) gi|255541138|ref|XP_002511633.1| (e_value=1e-72) catalytic, putative [Ricinus communis];; (*SWP) sp|Q5XF59|HIBC4_ARATH (e_value=1e-60) 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1;; (*TAIR) AT3G60510.2 (e_value=8e-63) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr3:22357584-22360003 REVERSE LENGTH=317;; (*ITAG) Solyc01g090700.2.1 (e_value=4e-79) genomic_reference:SL2.40ch01 gene_region:76099361-76107876 transcript_region:SL2.40ch01:76099361..76107876- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00018512g0003.1 protein NbC24480391g0001.1 protein ; (*GB) gi|399213|sp|P31542.1|CLPAB_SOLLC (e_value=4e-55) RecName: Full=ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic; Flags: Precursor;; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=1e-56) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=3e-48) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=7e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00023101g0002.1 protein NbS00014236g0001.1 protein NbS00019917g0001.1 protein NbS00033213g0001.1 protein NbS00033213g0004.1 protein NbC23841612g0001.1 protein ; (*GB) gi|356525960|ref|XP_003531589.1| (e_value=2e-35) PREDICTED: cell division control protein 48 homolog C-like [Glycine max];; (*SWP) sp|Q9SS94|CD48C_ARATH (e_value=7e-30) Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=2 SV=2;; (*TAIR) AT3G01610.1 (e_value=5e-31) | Symbols: CDC48C, emb1354 | cell division cycle 48C | chr3:231787-235057 FORWARD LENGTH=820;; (*ITAG) Solyc01g068330.2.1 (e_value=4e-43) genomic_reference:SL2.40ch01 gene_region:69934547-69940553 transcript_region:SL2.40ch01:69934547..69940553- go_terms:GO:0006508,GO:0005524,GO:0017111 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111 NbS00046862g0001.1 protein NbC25891499g0001.1 protein ; (*GB) gi|65736533|dbj|BAD98515.1| (e_value=1e-95) TONSOKU protein [Nicotiana tabacum];; (*SWP) sp|Q6Q4D0|TONS_ARATH (e_value=3e-64) Protein TONSOKU OS=Arabidopsis thaliana GN=TSK PE=1 SV=2;; (*TAIR) AT3G18730.1 (e_value=3e-65) | Symbols: TSK, MGO3, BRU1 | tetratricopeptide repeat (TPR)-containing protein | chr3:6446062-6453045 REVERSE LENGTH=1311;; (*ITAG) Solyc11g005690.1.1 (e_value=8e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:510171-525342 transcript_region:SL2.40ch11:510171..525342+ go_terms:GO:0005515,GO:0005488 functional_description:"Tetratricopeptide repeat family (AHRD V1 *--- B4VR69_9CYAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005515,GO:0005488 NbS00015719g0002.1 protein NbS00013780g0002.1 protein NbS00031941g0001.1 protein ; (*GB) gi|224057238|ref|XP_002299188.1| (e_value=6e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g096600.2.1 (e_value=3e-32) genomic_reference:SL2.40ch01 gene_region:79421544-79440342 transcript_region:SL2.40ch01:79421544..79440342- go_terms:GO:0003711,GO:0005515 functional_description:"THO complex subunit 1 (AHRD V1 **-- B0WA57_CULQU)"; GO:0003711,GO:0005515 NbS00037043g0001.1 protein ; (*GB) gi|356523290|ref|XP_003530273.1| (e_value=4e-41) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max];; (*SWP) sp|Q9LHP4|RCH2_ARATH (e_value=7e-25) Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1;; (*TAIR) AT3G24240.1 (e_value=5e-26) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr3:8780551-8784150 FORWARD LENGTH=1141;; (*ITAG) Solyc10g085120.1.1 (e_value=3e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63741956-63745075 transcript_region:SL2.40ch10:63741956..63745075+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00035645g0001.1 protein ; (*GB) gi|359496595|ref|XP_002267987.2| (e_value=2e-39) PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Vitis vinifera];; (*SWP) sp|Q5YDB6|CPL1_ARATH (e_value=1e-20) RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1;; (*TAIR) AT4G21670.1 (e_value=9e-22) | Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain phosphatase-like 1 | chr4:11511511-11516922 FORWARD LENGTH=967;; (*ITAG) Solyc02g078550.2.1 (e_value=2e-67) genomic_reference:SL2.40ch02 gene_region:37786234-37796329 transcript_region:SL2.40ch02:37786234..37796329- go_terms:GO:0004647,GO:0019204 functional_description:"RNA polymerase II C-terminal domain phosphatase-like 1 (AHRD V1 **** CPL1_ARATH); contains Interpro domain(s) IPR004274 NLI interacting factor "; GO:0004647,GO:0019204 NbS00022193g0001.1 protein NbS00026989g0005.1 protein NbS00022518g0001.1 protein NbS00022518g0102.1 protein NbC23975337g0001.1 protein ; (*ITAG) Solyc07g052940.2.1 (e_value=2e-18) genomic_reference:SL2.40ch07 gene_region:58649958-58663425 transcript_region:SL2.40ch07:58649958..58663425- functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6JWJ3_SCHJY); contains Interpro domain(s) IPR001214 SET "; NbS00001936g0002.1 protein NbS00007498g0001.1 protein NbS00022435g0102.1 protein NbS00009418g0001.1 protein NbS00060655g0001.1 protein ; (*GB) gi|356552866|ref|XP_003544783.1| (e_value=1e-57) PREDICTED: probable beta-D-xylosidase 7-like [Glycine max];; (*SWP) sp|Q9SGZ5|BXL7_ARATH (e_value=1e-53) Probable beta-D-xylosidase 7 OS=Arabidopsis thaliana GN=BXL7 PE=2 SV=2;; (*TAIR) AT1G78060.1 (e_value=1e-54) | Symbols: | Glycosyl hydrolase family protein | chr1:29349796-29352868 REVERSE LENGTH=767;; (*ITAG) Solyc04g072870.1.1 (e_value=1e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:57420673-57423910 transcript_region:SL2.40ch04:57420673..57423910- go_terms:GO:0009044 functional_description:"Beta-D-xylosidase (AHRD V1 **** Q8W011_HORVU); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0009044 NbC25367760g0001.1 protein ; (*GB) gi|359482107|ref|XP_002270537.2| (e_value=2e-54) PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera];; (*TAIR) AT5G02310.1 (e_value=2e-41) | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006;; (*ITAG) Solyc09g010830.2.1 (e_value=2e-62) genomic_reference:SL2.40ch09 gene_region:4126727-4139851 transcript_region:SL2.40ch09:4126727..4139851- go_terms:GO:0008270 functional_description:"Ubiquitin ligase E3 (Fragment) (AHRD V1 *-*- Q16LM2_AEDAE); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0008270 NbS00028967g0001.1 protein NbS00003880g0106.1 protein NbS00002187g0001.1 protein NbS00052664g0001.1 protein ; (*GB) gi|296089690|emb|CBI39509.3| (e_value=3e-41) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g099790.2.1 (e_value=6e-63) genomic_reference:SL2.40ch01 gene_region:81694836-81702099 transcript_region:SL2.40ch01:81694836..81702099+ go_terms:GO:0003677,GO:0004842 functional_description:"AT3G05545 protein (Fragment) (AHRD V1 ***- B9DHH4_ARATH); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0003677,GO:0004842 NbS00010097g0003.1 protein NbS00027755g0004.1 protein NbC24223235g0001.1 protein ; (*GB) gi|350537253|ref|NP_001234030.1| (e_value=4e-53) alpha glucosidase II precursor [Solanum lycopersicum];; (*SWP) sp|Q8TET4|GANC_HUMAN (e_value=1e-41) Neutral alpha-glucosidase C OS=Homo sapiens GN=GANC PE=2 SV=3;; (*TAIR) AT5G63840.1 (e_value=2e-47) | Symbols: RSW3, PSL5 | Glycosyl hydrolases family 31 protein | chr5:25545056-25548922 FORWARD LENGTH=921;; (*ITAG) Solyc04g049070.2.1 (e_value=9e-56) genomic_reference:SL2.40ch04 gene_region:38473202-38481643 transcript_region:SL2.40ch04:38473202..38481643- go_terms:GO:0004558 functional_description:"Alpha glucosidase II (AHRD V1 **** Q70AC6_SOLLC); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00050332g0001.1 protein NbS00010547g0003.1 protein NbS00011039g0001.1 protein NbC24508814g0001.1 protein ; (*GB) gi|417073|sp|Q03460.1|GLSN_MEDSA (e_value=3e-53) RecName: Full=Glutamate synthase [NADH], amyloplastic; AltName: Full=NADH-GOGAT; Flags: Precursor;; (*SWP) sp|Q03460|GLSN_MEDSA (e_value=8e-55) Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1;; (*TAIR) AT5G53460.3 (e_value=7e-55) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=8e-62) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00013340g0101.1 protein NbS00010564g0001.1 protein NbS00016633g0002.1 protein NbS00031152g0001.1 protein NbS00000696g0101.1 protein NbC23905900g0001.1 protein ; (*GB) gi|374095609|gb|AEY85032.1| (e_value=2e-43) spliceosomal-like protein [Camellia sinensis];; (*SWP) sp|Q1LVE8|SF3B3_DANRE (e_value=2e-34) Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1;; (*TAIR) AT3G55200.1 (e_value=3e-42) | Symbols: | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein | chr3:20460533-20464361 FORWARD LENGTH=1214;; (*ITAG) Solyc04g010260.2.1 (e_value=3e-45) genomic_reference:SL2.40ch04 gene_region:3583577-3588628 transcript_region:SL2.40ch04:3583577..3588628- go_terms:GO:0005515 functional_description:"Pre-mRNA-splicing factor RSE1 (AHRD V1 ***- A8N7S1_COPC7); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515 NbS00031050g0001.1 protein NbS00031050g0004.1 protein NbS00031050g0006.1 protein NbS00019766g0001.1 protein NbS00023767g0003.1 protein NbC24079289g0001.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=2e-24) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=4e-23) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=3e-24) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=2e-29) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00003259g0106.1 protein NbS00009478g0104.1 protein NbS00009478g0107.1 protein NbS00024424g0002.1 protein ; (*ITAG) Solyc11g067070.1.1 (e_value=5e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:49895910-49899607 transcript_region:SL2.40ch11:49895910..49899607- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q6RC06_PEA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00003035g0001.1 protein NbS00005299g0004.1 protein NbS00006681g0002.1 protein NbC24331615g0001.1 protein NbS00028149g0003.1 protein NbS00028149g0004.1 protein NbS00012040g0001.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=3e-30) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00044386g0001.1 protein ; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*TAIR) AT1G55325.1 (e_value=5e-12) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20646875 FORWARD LENGTH=1921;; (*ITAG) Solyc04g039950.2.1 (e_value=2e-48) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00019331g0001.1 protein NbS00026589g0001.1 protein NbS00027334g0002.1 protein ; (*GB) gi|224108671|ref|XP_002314930.1| (e_value=5e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT5G49400.1 (e_value=2e-22) | Symbols: | zinc knuckle (CCHC-type) family protein | chr5:20031154-20031981 FORWARD LENGTH=275;; (*ITAG) Solyc01g060030.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:62258951-62260745 transcript_region:SL2.40ch01:62258951..62260745+ functional_description:"Zinc finger CCHC domain-containing protein 10 (AHRD V1 *-*- B6TKA1_MAIZE)"; NbS00008628g0001.1 protein NbS00005939g0001.1 protein NbS00005939g0103.1 protein NbS00035776g0001.1 protein NbS00025194g0002.1 protein NbC24291285g0001.1 protein ; (*GB) gi|225459554|ref|XP_002285853.1| (e_value=7e-55) PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAP8|LACS9_ARATH (e_value=3e-47) Long chain acyl-CoA synthetase 9, chloroplastic OS=Arabidopsis thaliana GN=LACS9 PE=2 SV=1;; (*TAIR) AT1G77590.1 (e_value=3e-48) | Symbols: LACS9 | long chain acyl-CoA synthetase 9 | chr1:29148501-29151776 REVERSE LENGTH=691;; (*ITAG) Solyc07g045290.2.1 (e_value=1e-39) genomic_reference:SL2.40ch07 gene_region:55717054-55724687 transcript_region:SL2.40ch07:55717054..55724687+ go_terms:GO:0004467 functional_description:"Long-chain-fatty-acid--CoA ligase 3 (AHRD V1 **** ACSL3_HUMAN); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0004467 NbS00034984g0001.1 protein NbS00034984g0004.1 protein NbS00012797g0001.1 protein NbS00044929g0001.1 protein NbS00039528g0001.1 protein NbC24420410g0001.1 protein ; (*GB) gi|255566849|ref|XP_002524408.1| (e_value=3e-22) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*TAIR) AT1G25570.1 (e_value=7e-22) | Symbols: | Di-glucose binding protein with Leucine-rich repeat domain | chr1:8992183-8995430 REVERSE LENGTH=628;; (*ITAG) Solyc05g009800.2.1 (e_value=2e-25) genomic_reference:SL2.40ch05 gene_region:4015410-4023011 transcript_region:SL2.40ch05:4015410..4023011- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00016782g0001.1 protein NbS00048699g0001.1 protein ; (*GB) gi|224100077|ref|XP_002311734.1| (e_value=1e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FI40|BAHD1_ARATH (e_value=1e-16) BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1;; (*TAIR) AT3G26040.1 (e_value=7e-25) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbC23295987g0001.1 protein ; (*GB) gi|188532151|gb|ACD63087.1| (e_value=5e-34) RNA polymerase II largest subunit [Nicotiana tabacum];; (*SWP) sp|P18616|RPB1_ARATH (e_value=7e-30) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=3;; (*TAIR) AT4G35800.1 (e_value=5e-31) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839;; (*ITAG) Solyc02g083350.2.1 (e_value=3e-36) genomic_reference:SL2.40ch02 gene_region:41367508-41376061 transcript_region:SL2.40ch02:41367508..41376061- go_terms:GO:0031625 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SXC0_RICCO); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0031625 NbS00028216g0001.1 protein NbS00001767g0001.1 protein ; (*GB) gi|255544067|ref|XP_002513096.1| (e_value=6e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G45540.1 (e_value=1e-18) | Symbols: | Protein of unknown function (DUF594) | chr5:18458294-18460705 REVERSE LENGTH=803;; (*ITAG) Solyc12g094650.1.1 (e_value=1e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00000610g0001.1 protein NbS00000610g0003.1 protein NbC24459109g0001.1 protein ; (*GB) gi|296081749|emb|CBI20754.3| (e_value=2e-76) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SV20|COPB2_ARATH (e_value=6e-66) Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2;; (*TAIR) AT4G31490.1 (e_value=5e-67) | Symbols: | Coatomer, beta subunit | chr4:15269460-15272693 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=2e-83) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbC23540242g0001.1 protein ; (*GB) gi|3334200|sp|O49954.1|GCSP_SOLTU (e_value=2e-27) RecName: Full=Glycine dehydrogenase [decarboxylating], mitochondrial; AltName: Full=Glycine cleavage system P protein; AltName: Full=Glycine decarboxylase; Flags: Precursor;; (*SWP) sp|O49954|GCSP_SOLTU (e_value=5e-29) Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1;; (*TAIR) AT2G26080.1 (e_value=2e-25) | Symbols: AtGLDP2, GLDP2 | glycine decarboxylase P-protein 2 | chr2:11109330-11113786 REVERSE LENGTH=1044;; (*ITAG) Solyc08g065220.2.1 (e_value=6e-30) genomic_reference:SL2.40ch08 gene_region:50293331-50300381 transcript_region:SL2.40ch08:50293331..50300381+ go_terms:GO:0004375 functional_description:"Glycine dehydrogenase P protein (AHRD V1 **** Q6V9T1_ORYSJ); contains Interpro domain(s) IPR003437 Glycine cleavage system P-protein "; GO:0004375 NbS00000300g0101.1 protein NbS00019505g0002.1 protein NbC24161617g0001.1 protein ; (*GB) gi|356564899|ref|XP_003550684.1| (e_value=6e-52) PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max];; (*SWP) sp|Q66HG5|TM9S2_RAT (e_value=9e-35) Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1;; (*TAIR) AT3G13772.1 (e_value=1e-50) | Symbols: TMN7, AtTMN7 | transmembrane nine 7 | chr3:4521712-4524394 REVERSE LENGTH=641;; (*ITAG) Solyc07g005600.2.1 (e_value=3e-57) genomic_reference:SL2.40ch07 gene_region:487667-492520 transcript_region:SL2.40ch07:487667..492520- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 4 (AHRD V1 **** B6SXZ2_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00009393g0001.1 protein NbS00009265g0101.1 protein NbS00009265g0102.1 protein NbS00009265g0105.1 protein NbS00009265g0106.1 protein NbS00016871g0001.1 protein NbS00019399g0004.1 protein NbS00062225g0001.1 protein NbS00062225g0002.1 protein NbS00060348g0002.1 protein NbS00002780g0001.1 protein NbS00002780g0003.1 protein NbC24148431g0001.1 protein ; (*GB) gi|51968480|dbj|BAD42932.1| (e_value=2e-35) vacuolar-type H+-ATPase subunit B3 (VHA-B3) [Arabidopsis thaliana];; (*SWP) sp|Q40078|VATB1_HORVU (e_value=4e-36) V-type proton ATPase subunit B 1 OS=Hordeum vulgare PE=2 SV=1;; (*TAIR) AT1G20260.1 (e_value=1e-36) | Symbols: | ATPase, V1 complex, subunit B protein | chr1:7016971-7020290 FORWARD LENGTH=487;; (*ITAG) Solyc01g111760.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:89701090-89706839 transcript_region:SL2.40ch01:89701090..89706839+ go_terms:GO:0046961 functional_description:"V-type ATP synthase beta chain (AHRD V1 ***- VATB_PYRHO); contains Interpro domain(s) IPR005723 ATPase, V1 complex, subunit B "; GO:0046961 NbS00003868g0201.1 protein NbS00009056g0001.1 protein NbS00008181g0001.1 protein NbS00008181g0002.1 protein ; (*GB) gi|255697190|emb|CAR92295.1| (e_value=8e-16) relative to APETALA2 1 [Solanum tuberosum subsp. andigenum];; (*ITAG) Solyc10g084340.1.1 (e_value=8e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63251955-63255101 transcript_region:SL2.40ch10:63251955..63255101- go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *--- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00008181g0003.1 protein NbS00002767g0001.1 protein NbS00003252g0001.1 protein ; (*GB) gi|350535206|ref|NP_001234182.1| (e_value=1e-35) exportin 1 [Solanum lycopersicum];; (*SWP) sp|Q54EV7|XPO1_DICDI (e_value=5e-23) Exportin-1 OS=Dictyostelium discoideum GN=xpo1 PE=3 SV=2;; (*TAIR) AT5G17020.1 (e_value=2e-35) | Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1075;; (*ITAG) Solyc03g096920.2.1 (e_value=2e-38) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- go_terms:GO:0005049 functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "; GO:0005049 NbS00002033g0001.1 protein NbS00013667g0006.1 protein NbS00029174g0001.1 protein NbC24761788g0001.1 protein ; (*GB) gi|38453854|dbj|BAD02268.1| (e_value=6e-58) aspartate aminotransferase [Nicotiana tabacum];; (*SWP) sp|P26563|AATM_LUPAN (e_value=1e-48) Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1;; (*TAIR) AT4G31990.4 (e_value=2e-49) | Symbols: ASP5 | aspartate aminotransferase 5 | chr4:15471074-15473521 REVERSE LENGTH=448;; (*ITAG) Solyc08g041870.2.1 (e_value=4e-53) genomic_reference:SL2.40ch08 gene_region:27494734-27500528 transcript_region:SL2.40ch08:27494734..27500528- go_terms:GO:0004069 functional_description:"Aspartate aminotransferase (AHRD V1 **** Q2XTE6_SOLTU); contains Interpro domain(s) IPR000796 Aspartate/other aminotransferase "; GO:0004069 NbS00025115g0001.1 protein ; (*ITAG) Solyc03g113600.2.1 (e_value=1e-81) genomic_reference:SL2.40ch03 gene_region:57730078-57733020 transcript_region:SL2.40ch03:57730078..57733020+ functional_description:"IFA binding protein (AHRD V1 *-*- A6MGY3_LILLO); contains Interpro domain(s) IPR007656 Protein of unknown function DUF593 "; NbS00009237g0003.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00000225g0002.1 protein NbS00039381g0002.1 protein NbS00022256g0001.1 protein NbS00022256g0002.1 protein NbS00022256g0003.1 protein ; (*GB) gi|224103369|ref|XP_002313028.1| (e_value=5e-24) hypothetical protein POPTRDRAFT_557208 [Populus trichocarpa];; (*SWP) sp|Q6NPM8|IMPL2_ARATH (e_value=7e-24) Bifunctional phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1;; (*TAIR) AT4G39120.1 (e_value=9e-25) | Symbols: IMPL2, HISN7 | myo-inositol monophosphatase like 2 | chr4:18225578-18227988 REVERSE LENGTH=375;; (*ITAG) Solyc01g109930.2.1 (e_value=4e-23) genomic_reference:SL2.40ch01 gene_region:88522523-88527340 transcript_region:SL2.40ch01:88522523..88527340+ go_terms:GO:0008934 functional_description:"Inositol monophosphatase family protein (AHRD V1 **** D7MGB6_ARALY); contains Interpro domain(s) IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase "; GO:0008934 NbS00029266g0003.1 protein NbS00008147g0001.1 protein NbS00008147g0002.1 protein NbS00034315g0001.1 protein NbS00018239g0002.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=2e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=4e-29) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00018239g0003.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=8e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=4e-30) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00026553g0001.1 protein NbS00011397g0101.1 protein NbS00015176g0101.1 protein NbS00015176g0102.1 protein NbC24057186g0001.1 protein ; (*GB) gi|224074699|ref|XP_002304430.1| (e_value=7e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|P34811|EFGC_SOYBN (e_value=3e-42) Elongation factor G, chloroplastic OS=Glycine max GN=FUSA PE=3 SV=1;; (*TAIR) AT1G62750.1 (e_value=9e-47) | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | Translation elongation factor EFG/EF2 protein | chr1:23233622-23236321 REVERSE LENGTH=783;; (*ITAG) Solyc08g079180.2.1 (e_value=4e-53) genomic_reference:SL2.40ch08 gene_region:59976652-59982626 transcript_region:SL2.40ch08:59976652..59982626- go_terms:GO:0003924 functional_description:"Elongation factor G (AHRD V1 ***- Q9SI75_ARATH); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0003924 NbS00004988g0105.1 protein NbS00025086g0002.1 protein ; (*GB) gi|255552942|ref|XP_002517514.1| (e_value=4e-43) Placental protein 11 precursor, putative [Ricinus communis];; (*SWP) sp|Q8JFY9|ENDUA_XENLA (e_value=1e-14) Poly(U)-specific endoribonuclease-A OS=Xenopus laevis GN=endou-a PE=1 SV=1;; (*TAIR) AT4G17100.2 (e_value=6e-42) | Symbols: | EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). | chr4:9610164-9612513 REVERSE LENGTH=437;; (*ITAG) Solyc08g077510.2.1 (e_value=5e-49) genomic_reference:SL2.40ch08 gene_region:58665382-58670129 transcript_region:SL2.40ch08:58665382..58670129+ go_terms:GO:0004521,GO:0003723 functional_description:"Poly(U)-specific endoribonuclease-A (AHRD V1 **** ENDUA_XENLA); contains Interpro domain(s) IPR018998 Endoribonuclease XendoU "; GO:0004521,GO:0003723 NbC24586316g0001.1 protein ; (*GB) gi|225423907|ref|XP_002281818.1| (e_value=8e-42) PREDICTED: BRO1 domain-containing protein BROX [Vitis vinifera];; (*TAIR) AT1G13310.1 (e_value=2e-22) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:4561217-4562929 REVERSE LENGTH=374;; (*ITAG) Solyc04g007020.2.1 (e_value=3e-60) genomic_reference:SL2.40ch04 gene_region:738731-742225 transcript_region:SL2.40ch04:738731..742225- functional_description:"BRO1 domain-containing protein BROX (AHRD V1 **-- B5X0Z6_SALSA); contains Interpro domain(s) IPR004328 BRO1 "; NbS00010777g0003.1 protein NbS00010777g0004.1 protein NbS00004280g0102.1 protein NbS00041238g0001.1 protein NbS00024694g0001.1 protein NbS00024694g0007.1 protein ; (*GB) gi|6729025|gb|AAF27021.1|AC009177_11 (e_value=5e-19) putative sugar transporter [Arabidopsis thaliana];; (*SWP) sp|Q0WQ63|ERDL8_ARATH (e_value=2e-20) Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1;; (*TAIR) AT3G05150.1 (e_value=1e-21) | Symbols: | Major facilitator superfamily protein | chr3:1440216-1443361 FORWARD LENGTH=470;; (*ITAG) Solyc09g074230.2.1 (e_value=4e-15) genomic_reference:SL2.40ch09 gene_region:61501305-61505288 transcript_region:SL2.40ch09:61501305..61505288- go_terms:GO:0005536 functional_description:"Glucose transporter 8 (AHRD V1 **** Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0005536 NbC24070867g0001.1 protein ; (*GB) gi|313184319|emb|CBL94184.1| (e_value=4e-16) putative COBL7 (COBRA-LIKE 7) [Malus x domestica];; (*SWP) sp|Q8GZ17|COBL7_ARATH (e_value=2e-14) COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2;; (*TAIR) AT4G16120.1 (e_value=2e-15) | Symbols: ATSEB1, COBL7, SEB1 | COBRA-like protein-7 precursor | chr4:9116591-9119138 REVERSE LENGTH=661;; (*ITAG) Solyc01g065530.2.1 (e_value=5e-19) genomic_reference:SL2.40ch01 gene_region:64199720-64202838 transcript_region:SL2.40ch01:64199720..64202838+ functional_description:"COBRA-like protein (AHRD V1 ***- Q655F2_ORYSJ); contains Interpro domain(s) IPR006918 Glycosyl-phosphatidyl inositol-anchored, plant "; NbS00040667g0001.1 protein ; (*GB) gi|359473271|ref|XP_002277155.2| (e_value=6e-71) PREDICTED: uncharacterized protein LOC100246806 [Vitis vinifera];; (*TAIR) AT1G27000.1 (e_value=1e-54) | Symbols: | Protein of unknown function (DUF1664) | chr1:9374068-9376422 FORWARD LENGTH=304;; (*ITAG) Solyc08g005230.2.1 (e_value=8e-72) genomic_reference:SL2.40ch08 gene_region:144167-150496 transcript_region:SL2.40ch08:144167..150496+ functional_description:"BZIP transcription factor bZIP108 (Fragment) (AHRD V1 *--- Q0GPJ1_SOYBN); contains Interpro domain(s) IPR012458 Protein of unknown function DUF1664 "; NbS00002131g0003.1 protein NbS00039891g0001.1 protein ; (*GB) gi|32478029|gb|AAP83376.1| (e_value=1e-55) SEPALLATA1-like MADS-box [Solanum lycopersicum];; (*SWP) sp|P29382|SEP1_ARATH (e_value=3e-32) Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2;; (*TAIR) AT5G15800.1 (e_value=2e-33) | Symbols: SEP1, AGL2 | K-box region and MADS-box transcription factor family protein | chr5:5151594-5153767 REVERSE LENGTH=251;; (*ITAG) Solyc02g089200.2.1 (e_value=5e-58) genomic_reference:SL2.40ch02 gene_region:45652869-45657506 transcript_region:SL2.40ch02:45652869..45657506+ go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor (AHRD V1 **** Q3KSZ0_PRUDU); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00010880g0002.1 protein NbS00004340g0002.1 protein ; (*GB) gi|359494661|ref|XP_002264362.2| (e_value=2e-124) PREDICTED: TEL2-interacting protein 1 homolog [Vitis vinifera];; (*TAIR) AT1G79190.1 (e_value=1e-97) | Symbols: | ARM repeat superfamily protein | chr1:29788639-29794116 FORWARD LENGTH=1335;; (*ITAG) Solyc12g017280.1.1 (e_value=2e-163) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6478972-6496635 transcript_region:SL2.40ch12:6478972..6496635+ go_terms:GO:0005488 functional_description:"Os10g0575800 protein (Fragment) (AHRD V1 ***- Q0IVE5_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00004340g0003.1 protein NbC23794875g0001.1 protein ; (*GB) gi|357438865|ref|XP_003589709.1| (e_value=1e-24) Pre-mRNA-splicing factor spp2 [Medicago truncatula];; (*SWP) sp|Q9C801|MOS2_ARATH (e_value=3e-18) Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1;; (*TAIR) AT1G33520.1 (e_value=2e-19) | Symbols: MOS2 | D111/G-patch domain-containing protein | chr1:12157488-12158876 REVERSE LENGTH=462;; (*ITAG) Solyc08g074570.1.1 (e_value=6e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:55846727-55848184 transcript_region:SL2.40ch08:55846727..55848184+ go_terms:GO:0005515,GO:0003723 functional_description:"G patch domain and KOW motifs-containing protein (AHRD V1 *--- GPKOW_XENLA); contains Interpro domain(s) IPR005824 KOW "; GO:0005515,GO:0003723 NbS00012223g0001.1 protein NbS00011904g0103.1 protein NbS00011904g0104.1 protein NbS00026757g0103.1 protein NbS00005596g0002.1 protein NbS00045671g0004.1 protein NbS00015750g0101.1 protein NbS00016750g0001.1 protein NbS00000353g0001.1 protein NbS00045537g0001.1 protein NbS00013689g0001.1 protein NbS00005812g0001.1 protein NbS00002732g0001.1 protein NbS00037068g0001.1 protein NbS00016495g0002.1 protein NbS00027435g0002.1 protein NbS00027435g0003.1 protein NbS00004375g0001.1 protein NbS00013319g0001.1 protein NbS00013319g0002.1 protein NbS00032691g0001.1 protein NbS00010490g0003.1 protein NbS00045462g0001.1 protein NbS00026554g0001.1 protein NbS00029571g0001.1 protein NbS00013605g0002.1 protein NbS00012872g0001.1 protein NbS00007607g0001.1 protein ; (*TAIR) AT3G25860.1 (e_value=7e-16) | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480;; (*ITAG) Solyc05g009530.2.1 (e_value=1e-16) genomic_reference:SL2.40ch05 gene_region:3737122-3743261 transcript_region:SL2.40ch05:3737122..3743261- go_terms:GO:0004742 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0004742 NbS00001706g0101.1 protein NbS00008340g0002.1 protein NbS00022664g0101.1 protein NbC23447716g0001.1 protein ; (*GB) gi|359487454|ref|XP_002271648.2| (e_value=1e-26) PREDICTED: callose synthase 1-like [Vitis vinifera];; (*SWP) sp|Q9SL03|CALS2_ARATH (e_value=7e-27) Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3;; (*TAIR) AT2G31960.2 (e_value=5e-28) | Symbols: GSL03 | glucan synthase-like 3 | chr2:13589545-13600066 FORWARD LENGTH=1950;; (*ITAG) Solyc01g073750.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00011711g0005.1 protein ; (*GB) gi|12229948|sp|Q9XG77.1|PSA6_TOBAC (e_value=1e-33) RecName: Full=Proteasome subunit alpha type-6; AltName: Full=20S proteasome alpha subunit A; AltName: Full=20S proteasome subunit alpha-1;; (*SWP) sp|Q9XG77|PSA6_TOBAC (e_value=4e-35) Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1;; (*TAIR) AT2G05840.1 (e_value=2e-32) | Symbols: PAA2 | 20S proteasome subunit PAA2 | chr2:2234226-2236053 FORWARD LENGTH=246;; (*ITAG) Solyc12g009140.1.1 (e_value=6e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2453127-2457231 transcript_region:SL2.40ch12:2453127..2457231- go_terms:GO:0019773,GO:0005839 functional_description:"Proteasome subunit alpha type (AHRD V1 ***- D2D307_GOSHI); contains Interpro domain(s) IPR001353 Proteasome, subunit alpha/beta "; GO:0019773,GO:0005839 NbS00022725g0001.1 protein NbS00022725g0002.1 protein NbS00043162g0002.1 protein NbS00016442g0003.1 protein NbS00039272g0003.1 protein ; (*GB) gi|225441183|ref|XP_002266033.1| (e_value=2e-62) PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera];; (*TAIR) AT5G03450.1 (e_value=5e-56) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630;; (*ITAG) Solyc09g008330.2.1 (e_value=4e-91) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008148g0001.1 protein ; (*TAIR) AT3G17205.2 (e_value=5e-13) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1015;; (*ITAG) Solyc01g057900.2.1 (e_value=4e-29) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00008148g0002.1 protein NbS00054029g0001.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=1e-16) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00037793g0002.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=2e-28) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006090.1.1 (e_value=7e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00011033g0003.1 protein NbS00044461g0001.1 protein ; (*ITAG) Solyc00g023590.2.1 (e_value=3e-26) genomic_reference:SL2.40ch00 gene_region:12141025-12143724 transcript_region:SL2.40ch00:12141025..12143724+ functional_description:"Unknown Protein (AHRD V1)"; NbC23933797g0001.1 protein ; (*GB) gi|226503239|ref|NP_001151455.1| (e_value=2e-61) RHM1 [Zea mays];; (*SWP) sp|Q9LH76|RHM3_ARATH (e_value=7e-62) Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1;; (*TAIR) AT3G14790.1 (e_value=5e-63) | Symbols: RHM3, ATRHM3 | rhamnose biosynthesis 3 | chr3:4964791-4966875 FORWARD LENGTH=664;; (*ITAG) Solyc07g062130.2.1 (e_value=5e-64) genomic_reference:SL2.40ch07 gene_region:62160950-62163332 transcript_region:SL2.40ch07:62160950..62163332+ go_terms:GO:0050377,GO:0010280 functional_description:"Dtdp-glucose 4 6-dehydratase (AHRD V1 *-** B8C5W5_THAPS); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050377,GO:0010280 NbS00013564g0002.1 protein NbS00007583g0001.1 protein NbS00002389g0005.1 protein ; (*GB) gi|269980525|gb|ACZ56437.1| (e_value=9e-46) IAA-amino acid hydrolase [Populus tomentosa];; (*SWP) sp|Q851L5|ILL3_ORYSJ (e_value=2e-35) IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1;; (*TAIR) AT3G02875.1 (e_value=6e-36) | Symbols: ILR1 | Peptidase M20/M25/M40 family protein | chr3:631993-633859 FORWARD LENGTH=442;; (*ITAG) Solyc06g054410.2.1 (e_value=8e-55) genomic_reference:SL2.40ch06 gene_region:33677809-33682268 transcript_region:SL2.40ch06:33677809..33682268- go_terms:GO:0010179 functional_description:"Iaa-amino acid hydrolase 4 (AHRD V1 **** B9IIQ5_POPTR); contains Interpro domain(s) IPR017439 Peptidase M20D, mername-AA028/carboxypeptidase Ss1 "; GO:0010179 NbS00002389g0006.1 protein NbS00059031g0003.1 protein NbC23647566g0001.1 protein ; (*GB) gi|255569145|ref|XP_002525541.1| (e_value=3e-42) DNA-directed RNA polymerase III subunit, putative [Ricinus communis];; (*SWP) sp|Q54IZ9|RPC2_DICDI (e_value=2e-37) DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1;; (*TAIR) AT5G45140.1 (e_value=3e-43) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=8e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00044228g0001.1 protein ; (*GB) gi|356542694|ref|XP_003539801.1| (e_value=5e-15) PREDICTED: aspartic proteinase-like protein 2-like [Glycine max];; (*TAIR) AT1G08210.1 (e_value=3e-14) | Symbols: | Eukaryotic aspartyl protease family protein | chr1:2577119-2580581 REVERSE LENGTH=492;; (*ITAG) Solyc09g008600.2.1 (e_value=4e-17) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbC24713464g0001.1 protein ; (*GB) gi|297743432|emb|CBI36299.3| (e_value=4e-67) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8GW57|PP134_ARATH (e_value=3e-58) Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2 SV=2;; (*TAIR) AT1G80150.1 (e_value=2e-59) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:30148738-30149931 FORWARD LENGTH=397;; (*ITAG) Solyc05g012250.1.1 (e_value=2e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5539986-5545737 transcript_region:SL2.40ch05:5539986..5545737- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KX87_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00040725g0001.1 protein NbS00016714g0002.1 protein NbS00001540g0002.1 protein NbS00014383g0004.1 protein NbS00021303g0001.1 protein NbS00008726g0003.1 protein NbS00006998g0003.1 protein NbS00006998g0005.1 protein NbS00006998g0006.1 protein NbS00006998g0008.1 protein NbS00018183g0003.1 protein NbS00036093g0001.1 protein NbS00020569g0002.1 protein NbS00020568g0001.1 protein NbS00001917g0001.1 protein ; (*GB) gi|224071461|ref|XP_002303471.1| (e_value=5e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7G6K7|FH3_ORYSJ (e_value=8e-62) Formin-like protein 3 OS=Oryza sativa subsp. japonica GN=FH3 PE=2 SV=2;; (*TAIR) AT1G31810.1 (e_value=6e-60) | Symbols: AFH14 | Formin Homology 14 | chr1:11399922-11405761 REVERSE LENGTH=1230;; (*ITAG) Solyc08g075650.2.1 (e_value=7e-96) genomic_reference:SL2.40ch08 gene_region:56957262-56966608 transcript_region:SL2.40ch08:56957262..56966608- go_terms:GO:0030036 functional_description:"Formin 2B (AHRD V1 ***- C7BGM9_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00007204g0001.1 protein NbC23855917g0001.1 protein ; (*GB) gi|224090111|ref|XP_002308939.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8RWS8|PP199_ARATH (e_value=4e-29) Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1;; (*TAIR) AT2G41720.2 (e_value=3e-30) | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:17403861-17406648 REVERSE LENGTH=683;; (*ITAG) Solyc04g015950.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:6487752-6499059 transcript_region:SL2.40ch04:6487752..6499059+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbC23251274g0001.1 protein ; (*GB) gi|357481855|ref|XP_003611213.1| (e_value=5e-31) Kinesin-1 [Medicago truncatula];; (*SWP) sp|Q9FZ06|ARK3_ARATH (e_value=2e-30) Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1;; (*TAIR) AT1G12430.2 (e_value=2e-31) | Symbols: ARK3 | armadillo repeat kinesin 3 | chr1:4234122-4238552 REVERSE LENGTH=920;; (*ITAG) Solyc01g091480.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00011264g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=5e-14) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00006837g0002.1 protein NbS00003145g0001.1 protein NbC25748590g0001.1 protein ; (*GB) gi|224116972|ref|XP_002317442.1| (e_value=6e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT3G14850.1 (e_value=1e-24) | Symbols: TBL41 | TRICHOME BIREFRINGENCE-LIKE 41 | chr3:4996592-4997611 FORWARD LENGTH=253;; (*ITAG) Solyc07g062210.2.1 (e_value=2e-36) genomic_reference:SL2.40ch07 gene_region:62231611-62234970 transcript_region:SL2.40ch07:62231611..62234970- functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00003792g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-55) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc06g035740.1.1 (e_value=5e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21562118-21565766 transcript_region:SL2.40ch06:21562118..21565766- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00037667g0001.1 protein ; (*ITAG) Solyc04g008500.2.1 (e_value=9e-14) genomic_reference:SL2.40ch04 gene_region:2123723-2129872 transcript_region:SL2.40ch04:2123723..2129872+ go_terms:GO:0003700 functional_description:"C2H2L domain class transcription factor (AHRD V1 **-* D9ZIU0_MALDO); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00047860g0001.1 protein ; (*ITAG) Solyc09g090930.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:65677871-65682183 transcript_region:SL2.40ch09:65677871..65682183+ go_terms:GO:0005488,GO:0005622 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00043840g0001.1 protein ; (*GB) gi|317106767|dbj|BAJ53259.1| (e_value=6e-105) JMS10C05.2 [Jatropha curcas];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=1e-92) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.1 (e_value=8e-94) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21288982-21292694 REVERSE LENGTH=773;; (*ITAG) Solyc03g058970.2.1 (e_value=1e-101) genomic_reference:SL2.40ch03 gene_region:24607756-24618336 transcript_region:SL2.40ch03:24607756..24618336- functional_description:"Alkaline alpha galactosidase (AHRD V1 **-- B5UAS6_TETTT); contains Interpro domain(s) IPR008811 Raffinose synthase "; NbS00026136g0007.1 protein NbS00035554g0002.1 protein NbC24215777g0001.1 protein ; (*GB) gi|296081602|emb|CBI20607.3| (e_value=2e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VY07|EPN1_ARATH (e_value=3e-17) Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1;; (*TAIR) AT5G11710.1 (e_value=2e-18) | Symbols: | ENTH/VHS family protein | chr5:3772981-3776316 FORWARD LENGTH=560;; (*ITAG) Solyc11g070110.1.1 (e_value=4e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51723447-51729083 transcript_region:SL2.40ch11:51723447..51729083- functional_description:"Epsin (AHRD V1 *-*- D3BQV6_POLPA); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; NbS00053639g0001.1 protein NbS00036174g0001.1 protein NbS00004316g0001.1 protein NbS00056122g0002.1 protein ; (*ITAG) Solyc01g109510.2.1 (e_value=2e-22) genomic_reference:SL2.40ch01 gene_region:88199066-88208942 transcript_region:SL2.40ch01:88199066..88208942+ go_terms:GO:0003677,GO:0008270 functional_description:"Subunit of the SWI/SNF chromatin remodeling complex (AHRD V1 *-*- C4QY27_PICPG); contains Interpro domain(s) IPR007526 SWIRM "; GO:0003677,GO:0008270 NbS00002017g0005.1 protein NbC23154779g0001.1 protein ; (*GB) gi|255565952|ref|XP_002523964.1| (e_value=1e-16) TATA-binding protein-associated factor MOT1, putative [Ricinus communis];; (*TAIR) AT3G54280.2 (e_value=2e-15) | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases | chr3:20092361-20104153 FORWARD LENGTH=2129;; (*ITAG) Solyc08g074500.2.1 (e_value=5e-23) genomic_reference:SL2.40ch08 gene_region:55766335-55779927 transcript_region:SL2.40ch08:55766335..55779927- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00028823g0101.1 protein NbS00022714g0002.1 protein ; (*GB) gi|223975697|gb|ACN32036.1| (e_value=1e-15) unknown [Zea mays]; NbS00043518g0001.1 protein ; (*GB) gi|225464707|ref|XP_002275726.1| (e_value=7e-29) PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Vitis vinifera];; (*SWP) sp|Q9FLV4|Y5248_ARATH (e_value=3e-24) G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1;; (*ITAG) Solyc03g007790.2.1 (e_value=6e-52) genomic_reference:SL2.40ch03 gene_region:2343464-2347272 transcript_region:SL2.40ch03:2343464..2347272+ go_terms:GO:0004674 functional_description:"Receptor-like protein kinase (AHRD V1 **** Q9FLV4_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00006951g0001.1 protein NbS00006951g0002.1 protein NbS00033327g0001.1 protein NbS00011854g0001.1 protein NbS00030452g0001.1 protein NbS00020420g0001.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=8e-23) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00033092g0001.1 protein NbS00004987g0002.1 protein NbS00004987g0004.1 protein NbS00004987g0005.1 protein NbS00022512g0004.1 protein ; (*GB) gi|325516248|gb|ADZ24702.1| (e_value=1e-16) tyrosine aminotransferase 1 [Solanum pennellii];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=5e-14) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=4e-15) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc10g007110.2.1 (e_value=1e-18) genomic_reference:SL2.40ch10 gene_region:1508116-1511280 transcript_region:SL2.40ch10:1508116..1511280- go_terms:GO:0004838 functional_description:"Tyrosine aminotransferase (AHRD V1 **** Q8GUE9_SOLSC); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0004838 NbS00024512g0001.1 protein ; (*ITAG) Solyc11g065260.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47715490-47734377 transcript_region:SL2.40ch11:47715490..47734377- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00001169g0107.1 protein NbS00000109g0007.1 protein NbS00007693g0001.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=7e-15) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbS00007693g0102.1 protein NbS00004858g0104.1 protein NbS00047037g0001.1 protein NbS00035679g0001.1 protein NbS00026547g0003.1 protein NbS00009802g0002.1 protein NbS00051470g0001.1 protein NbS00035853g0003.1 protein NbS00009607g0002.1 protein NbS00009607g0004.1 protein ; (*GB) gi|15218274|ref|NP_172447.1| (e_value=1e-18) U2 small nuclear ribonucleoprotein A' [Arabidopsis thaliana];; (*SWP) sp|P43333|RU2A_ARATH (e_value=3e-20) U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2;; (*TAIR) AT1G09760.1 (e_value=2e-21) | Symbols: U2A' | U2 small nuclear ribonucleoprotein A | chr1:3159476-3161603 REVERSE LENGTH=249;; (*ITAG) Solyc03g117940.2.1 (e_value=4e-21) genomic_reference:SL2.40ch03 gene_region:60972959-60976823 transcript_region:SL2.40ch03:60972959..60976823+ go_terms:GO:0005515,GO:0003729 functional_description:"U2 small nuclear ribonucleoprotein A&apos (AHRD V1 ***- Q1HPT8_BOMMO)"; GO:0005515,GO:0003729 NbC23412097g0001.1 protein ; (*GB) gi|350535513|ref|NP_001234454.1| (e_value=2e-13) CTR1-like protein kinase [Solanum lycopersicum];; (*ITAG) Solyc09g009090.2.1 (e_value=4e-16) genomic_reference:SL2.40ch09 gene_region:2427384-2442527 transcript_region:SL2.40ch09:2427384..2442527+ go_terms:GO:0005515,GO:0004709 functional_description:"Protein kinase (AHRD V1 *-** Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004709 NbS00017783g0001.1 protein NbC25477591g0001.1 protein ; (*GB) gi|359486497|ref|XP_002272442.2| (e_value=9e-26) PREDICTED: anaphase-promoting complex subunit 1-like [Vitis vinifera];; (*ITAG) Solyc06g048450.2.1 (e_value=8e-58) genomic_reference:SL2.40ch06 gene_region:27551031-27564579 transcript_region:SL2.40ch06:27551031..27564579+ functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 *-*- A2ATQ4_MOUSE)"; NbS00005398g0001.1 protein NbS00027235g0001.1 protein NbS00027235g0003.1 protein NbS00006727g0001.1 protein ; (*GB) gi|133711804|gb|ABO36622.1| (e_value=1e-12) copia LTR rider [Solanum lycopersicum]; NbS00006727g0002.1 protein NbS00012317g0104.1 protein NbS00012317g0105.1 protein NbS00033519g0001.1 protein NbS00005121g0102.1 protein NbS00027685g0002.1 protein NbS00014776g0003.1 protein NbS00012724g0003.1 protein NbC23151083g0001.1 protein ; (*GB) gi|62733297|gb|AAX95414.1| (e_value=2e-25) RuBisCO activase small isoform precursor [Oryza sativa Japonica Group];; (*SWP) sp|Q7X999|RCA2_LARTR (e_value=2e-26) Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1;; (*TAIR) AT2G39730.2 (e_value=6e-27) | Symbols: RCA | rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446;; (*ITAG) Solyc10g086580.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64688483-64690961 transcript_region:SL2.40ch10:64688483..64690961- go_terms:GO:0005524 functional_description:"Ribulose-1 5-bisphosphate carboxylase/oxygenase activase 1 (AHRD V1 ***- Q9AXG1_GOSHI); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524 NbS00059403g0001.1 protein ; (*ITAG) Solyc08g080020.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:60544916-60545230 transcript_region:SL2.40ch08:60544916..60545230+ go_terms:GO:0009611 functional_description:"Serine protease inhibitor potato inhibitor I-type family protein (AHRD V1 ***- D7LT19_ARALY); contains Interpro domain(s) IPR000864 Proteinase inhibitor I13, potato inhibitor I "; GO:0009611 NbS00002370g0001.1 protein NbS00008323g0001.1 protein ; (*GB) gi|225443950|ref|XP_002272255.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100256651 [Vitis vinifera];; (*TAIR) AT1G30320.1 (e_value=8e-14) | Symbols: | Remorin family protein | chr1:10680348-10682852 FORWARD LENGTH=509;; (*ITAG) Solyc08g045640.2.1 (e_value=3e-24) genomic_reference:SL2.40ch08 gene_region:35144163-35146943 transcript_region:SL2.40ch08:35144163..35146943+ go_terms:GO:0003677 functional_description:"DNA-binding protein (Fragment) (AHRD V1 *--* Q42051_ARATH); contains Interpro domain(s) IPR005516 Remorin, C-terminal region "; GO:0003677 NbS00017851g0001.1 protein NbS00038043g0004.1 protein ; (*GB) gi|224141469|ref|XP_002324094.1| (e_value=2e-41) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q8GWT1|GAUTE_ARATH (e_value=2e-40) Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1;; (*TAIR) AT5G15470.1 (e_value=2e-41) | Symbols: GAUT14 | galacturonosyltransferase 14 | chr5:5021433-5024168 REVERSE LENGTH=532;; (*ITAG) Solyc02g067060.2.1 (e_value=6e-44) genomic_reference:SL2.40ch02 gene_region:31872754-31878126 transcript_region:SL2.40ch02:31872754..31878126- go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00048026g0001.1 protein ; (*ITAG) Solyc07g032700.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:40549211-40550016 transcript_region:SL2.40ch07:40549211..40550016- functional_description:"Unknown Protein (AHRD V1)"; NbS00021230g0001.1 protein ; (*GB) gi|147810333|emb|CAN73914.1| (e_value=2e-14) hypothetical protein VITISV_035233 [Vitis vinifera];; (*TAIR) AT3G07660.1 (e_value=6e-13) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:2445275-2450372 REVERSE LENGTH=841;; (*ITAG) Solyc07g045230.2.1 (e_value=1e-13) genomic_reference:SL2.40ch07 gene_region:55658476-55669122 transcript_region:SL2.40ch07:55658476..55669122- functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 *--- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00007564g0002.1 protein NbS00053572g0001.1 protein NbS00046322g0001.1 protein NbS00011285g0002.1 protein ; (*GB) gi|357517481|ref|XP_003629029.1| (e_value=3e-26) Auxin-induced protein 5NG4 [Medicago truncatula];; (*TAIR) AT5G45370.1 (e_value=5e-24) | Symbols: | nodulin MtN21 /EamA-like transporter family protein | chr5:18388411-18390282 FORWARD LENGTH=357;; (*ITAG) Solyc12g096160.1.1 (e_value=1e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63527617-63533159 transcript_region:SL2.40ch12:63527617..63533159- go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q9FHJ9_ARATH); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00017916g0007.1 protein ; (*GB) gi|147795796|emb|CAN61045.1| (e_value=1e-51) hypothetical protein VITISV_016590 [Vitis vinifera];; (*TAIR) AT5G58450.1 (e_value=1e-45) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057910.2.1 (e_value=2e-54) genomic_reference:SL2.40ch09 gene_region:47817635-47838635 transcript_region:SL2.40ch09:47817635..47838635+ go_terms:GO:0005488 functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 **-- NAA25_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00009753g0003.1 protein NbS00009753g0006.1 protein NbS00013163g0003.1 protein NbS00004464g0002.1 protein NbS00013435g0102.1 protein NbS00022310g0001.1 protein ; (*ITAG) Solyc02g086750.1.1 (e_value=9e-47) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00022310g0004.1 protein NbS00005530g0102.1 protein NbS00017540g0001.1 protein ; (*GB) gi|224118008|ref|XP_002331535.1| (e_value=6e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT3G17640.1 (e_value=3e-17) | Symbols: | Leucine-rich repeat (LRR) family protein | chr3:6032393-6033583 FORWARD LENGTH=396;; (*ITAG) Solyc07g042990.1.1 (e_value=2e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:53860420-53861646 transcript_region:SL2.40ch07:53860420..53861646- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbC23886557g0001.1 protein ; (*GB) gi|147819201|emb|CAN62632.1| (e_value=7e-46) hypothetical protein VITISV_031440 [Vitis vinifera];; (*SWP) sp|Q54IZ9|RPC2_DICDI (e_value=4e-26) DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1;; (*TAIR) AT5G45140.1 (e_value=4e-41) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00009869g0002.1 protein NbS00005878g0103.1 protein NbS00017496g0001.1 protein ; (*GB) gi|147861021|emb|CAN80865.1| (e_value=5e-53) hypothetical protein VITISV_042488 [Vitis vinifera];; (*SWP) sp|P49299|CYSZ_CUCMA (e_value=1e-47) Citrate synthase, glyoxysomal OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT3G58750.1 (e_value=3e-48) | Symbols: CSY2 | citrate synthase 2 | chr3:21724564-21727458 REVERSE LENGTH=514;; (*ITAG) Solyc12g011000.1.1 (e_value=7e-62) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3858049-3864969 transcript_region:SL2.40ch12:3858049..3864969- go_terms:GO:0005737,GO:0006099,GO:0044262 functional_description:"Citrate synthase (AHRD V1 ***- B9IFM7_POPTR); contains Interpro domain(s) IPR010953 Citrate synthase, type II "; GO:0005737,GO:0006099,GO:0044262 NbS00010225g0001.1 protein NbS00040248g0006.1 protein NbS00061150g0001.1 protein ; (*GB) gi|115435976|ref|NP_001042746.1| (e_value=2e-108) Os01g0279200 [Oryza sativa Japonica Group];; (*SWP) sp|Q8W207|CSN2_ARATH (e_value=2e-102) COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1;; (*TAIR) AT2G26990.1 (e_value=1e-103) | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome family protein | chr2:11519684-11522412 REVERSE LENGTH=439;; (*ITAG) Solyc01g008840.2.1 (e_value=2e-111) genomic_reference:SL2.40ch01 gene_region:2864398-2872190 transcript_region:SL2.40ch01:2864398..2872190+ go_terms:GO:0003714 functional_description:"COP9 signalosome complex subunit 2 (AHRD V1 ***- B6TIW9_MAIZE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0003714 NbS00013879g0008.1 protein NbS00028808g0001.1 protein NbS00016903g0003.1 protein ; (*GB) gi|255539965|ref|XP_002511047.1| (e_value=2e-37) caspase, putative [Ricinus communis];; (*SWP) sp|Q7XJE6|MCA1_ARATH (e_value=9e-34) Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1;; (*TAIR) AT1G02170.1 (e_value=7e-35) | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase 1 | chr1:411883-413426 FORWARD LENGTH=367;; (*ITAG) Solyc03g094160.2.1 (e_value=3e-44) genomic_reference:SL2.40ch03 gene_region:49508932-49512210 transcript_region:SL2.40ch03:49508932..49512210+ go_terms:GO:0005515,GO:0004197 functional_description:"Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic "; GO:0005515,GO:0004197 NbS00007719g0002.1 protein NbS00003604g0001.1 protein NbS00015929g0001.1 protein NbS00008452g0103.1 protein NbS00012737g0001.1 protein ; (*GB) gi|359475153|ref|XP_002281272.2| (e_value=4e-113) PREDICTED: serine/threonine-protein kinase SMG1 [Vitis vinifera];; (*ITAG) Solyc01g109080.2.1 (e_value=5e-179) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbS00012737g0003.1 protein NbS00040884g0001.1 protein NbS00024411g0001.1 protein NbS00015505g0001.1 protein NbS00049617g0001.1 protein ; (*GB) gi|356573263|ref|XP_003554782.1| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100801515 [Glycine max];; (*TAIR) AT1G32300.1 (e_value=5e-31) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr1:11651342-11653365 FORWARD LENGTH=595;; (*ITAG) Solyc09g005180.2.1 (e_value=8e-33) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00013512g0101.1 protein NbS00036460g0001.1 protein NbS00014002g0103.1 protein NbS00014002g0104.1 protein NbS00047339g0001.1 protein NbS00004569g0007.1 protein ; (*ITAG) Solyc01g098690.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbS00007226g0003.1 protein NbC25119354g0001.1 protein NbS00031147g0001.1 protein NbS00024350g0003.1 protein ; (*GB) gi|255647289|gb|ACU24111.1| (e_value=1e-98) unknown [Glycine max];; (*TAIR) AT2G39430.1 (e_value=6e-89) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00024350g0004.1 protein ; (*GB) gi|255647289|gb|ACU24111.1| (e_value=1e-98) unknown [Glycine max];; (*TAIR) AT2G39430.1 (e_value=6e-89) | Symbols: | Disease resistance-responsive (dirigent-like protein) family protein | chr2:16463422-16464390 FORWARD LENGTH=322;; (*ITAG) Solyc04g010270.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:3590492-3591691 transcript_region:SL2.40ch04:3590492..3591691+ functional_description:"Disease resistance response/ dirigent-like protein (AHRD V1 *-*- Q9M3C8_ARATH); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00002623g0001.1 protein NbS00002623g0002.1 protein NbS00036163g0001.1 protein ; (*GB) gi|356541273|ref|XP_003539103.1| (e_value=1e-15) PREDICTED: probable serine/threonine-protein kinase RLCKVII-like [Glycine max]; NbC24857782g0001.1 protein ; (*GB) gi|356511901|ref|XP_003524660.1| (e_value=1e-30) PREDICTED: protein LTV1 homolog [Glycine max];; (*TAIR) AT3G49990.1 (e_value=5e-20) | Symbols: | unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). | chr3:18532492-18534000 REVERSE LENGTH=502;; (*ITAG) Solyc04g081030.2.1 (e_value=5e-63) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00004256g0003.1 protein NbS00000450g0001.1 protein NbS00000450g0101.1 protein NbS00011466g0001.1 protein NbS00011291g0001.1 protein NbS00020165g0001.1 protein NbS00006392g0001.1 protein ; (*GB) gi|225452194|ref|XP_002270874.1| (e_value=7e-47) PREDICTED: F-box protein SKIP14 [Vitis vinifera];; (*SWP) sp|Q9LU91|SKI14_ARATH (e_value=2e-33) F-box protein SKIP14 OS=Arabidopsis thaliana GN=SKIP14 PE=1 SV=1;; (*TAIR) AT3G26000.1 (e_value=2e-34) | Symbols: | Ribonuclease inhibitor | chr3:9507042-9508542 REVERSE LENGTH=453;; (*ITAG) Solyc02g093840.2.1 (e_value=3e-64) genomic_reference:SL2.40ch02 gene_region:49121755-49124473 transcript_region:SL2.40ch02:49121755..49124473+ go_terms:GO:0005515 functional_description:"F-box family protein (AHRD V1 ***- D7LQX6_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0005515 NbS00002211g0003.1 protein ; (*ITAG) Solyc02g091940.2.1 (e_value=8e-17) genomic_reference:SL2.40ch02 gene_region:47740225-47741729 transcript_region:SL2.40ch02:47740225..47741729- functional_description:"AT5g13970/MAC12_6 (AHRD V1 ***- Q9FFX8_ARATH)"; NbS00024666g0001.1 protein NbS00039624g0002.1 protein ; (*ITAG) Solyc07g056370.2.1 (e_value=1e-27) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00017114g0002.1 protein NbS00001202g0002.1 protein NbS00002881g0003.1 protein NbS00010094g0001.1 protein ; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=8e-107) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=1e-32) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT3G08947.1 (e_value=1e-103) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=5e-123) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00001761g0002.1 protein ; (*GB) gi|255555311|ref|XP_002518692.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G35220.1 (e_value=6e-15) | Symbols: | Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272;; (*ITAG) Solyc01g107700.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:86915524-86922302 transcript_region:SL2.40ch01:86915524..86922302+ go_terms:GO:0004061 functional_description:"Kynurenine formamidase (AHRD V1 **-- D7BCL0_MEISD); contains Interpro domain(s) IPR007325 Putative cyclase "; GO:0004061 NbS00014674g0001.1 protein ; (*ITAG) Solyc09g007210.2.1 (e_value=1e-29) genomic_reference:SL2.40ch09 gene_region:827489-828966 transcript_region:SL2.40ch09:827489..828966- go_terms:GO:0042802,GO:0003918 functional_description:"DNA topoisomerase (ATP-hydrolyzing) (AHRD V1 **** D6GWL5_9EURY); contains Interpro domain(s) IPR004085 DNA topoisomerase VI, subunit A "; GO:0042802,GO:0003918 NbS00026153g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-31) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042420.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43129413-43132685 transcript_region:SL2.40ch12:43129413..43132685- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00018450g0102.1 protein NbS00021274g0004.1 protein NbS00003025g0002.1 protein NbS00014365g0001.1 protein NbS00004061g0101.1 protein NbS00004061g0102.1 protein NbS00004061g0103.1 protein NbS00010950g0001.1 protein ; (*GB) gi|59800202|sp|P69242.1|RPOT3_NICSY (e_value=4e-18) RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName: Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single subunit RNA polymerase 3; Flags: Precursor;; (*SWP) sp|P69242|RPOT3_NICSY (e_value=1e-19) DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1;; (*TAIR) AT2G24120.2 (e_value=7e-15) | Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10250139-10254530 REVERSE LENGTH=895;; (*ITAG) Solyc07g005930.2.1 (e_value=8e-22) genomic_reference:SL2.40ch07 gene_region:764089-775345 transcript_region:SL2.40ch07:764089..775345+ go_terms:GO:0003899,GO:0042802 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9IMA6_POPTR); contains Interpro domain(s) IPR002092 DNA-directed RNA polymerase, bacteriophage type "; GO:0003899,GO:0042802 NbS00010950g0104.1 protein NbS00010950g0201.1 protein NbS00010950g0205.1 protein NbS00011530g0001.1 protein ; (*GB) gi|148708560|gb|EDL40507.1| (e_value=2e-34) neurofilament, heavy polypeptide [Mus musculus];; (*SWP) sp|P19246|NFH_MOUSE (e_value=3e-34) Neurofilament heavy polypeptide OS=Mus musculus GN=Nefh PE=1 SV=3; NbS00011530g0005.1 protein ; (*GB) gi|225437002|ref|XP_002277634.1| (e_value=1e-46) PREDICTED: DNA repair helicase UVH6 [Vitis vinifera];; (*SWP) sp|Q8W4M7|ERCC2_ARATH (e_value=5e-38) DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1;; (*TAIR) AT1G03190.2 (e_value=4e-39) | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758;; (*ITAG) Solyc06g008970.2.1 (e_value=3e-54) genomic_reference:SL2.40ch06 gene_region:2910891-2919396 transcript_region:SL2.40ch06:2910891..2919396- go_terms:GO:0043141 functional_description:"ATP-dependent DNA helicase Ta0057 (AHRD V1 **** XPD_THEAC); contains Interpro domain(s) IPR001945 Xeroderma pigmentosum group D protein "; GO:0043141 NbS00061755g0002.1 protein NbS00034736g0002.1 protein NbS00027284g0003.1 protein NbS00028915g0004.1 protein NbC23559974g0001.1 protein ; (*GB) gi|18410084|ref|NP_567001.1| (e_value=9e-29) ABC transporter F family member 4 [Arabidopsis thaliana];; (*SWP) sp|Q9M1H3|AB4F_ARATH (e_value=3e-30) ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1;; (*TAIR) AT3G54540.1 (e_value=2e-31) | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723;; (*ITAG) Solyc07g008610.1.1 (e_value=6e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:3565983-3568070 transcript_region:SL2.40ch07:3565983..3568070+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C6H7S5_AJECH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbC25793147g0001.1 protein ; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=4e-70) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=4e-62) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=3e-63) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=9e-81) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00060487g0001.1 protein NbS00060487g0002.1 protein ; (*GB) gi|357478427|ref|XP_003609499.1| (e_value=4e-23) Large proline-rich protein BAT3 [Medicago truncatula];; (*TAIR) AT5G25270.1 (e_value=4e-24) | Symbols: | Ubiquitin-like superfamily protein | chr5:8757577-8762002 REVERSE LENGTH=658;; (*ITAG) Solyc06g036720.2.1 (e_value=4e-19) genomic_reference:SL2.40ch06 gene_region:23955142-23972017 transcript_region:SL2.40ch06:23955142..23972017+ functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; NbS00029173g0001.1 protein NbS00018934g0002.1 protein NbS00018934g0105.1 protein NbS00030847g0002.1 protein ; (*GB) gi|42570018|ref|NP_671802.2| (e_value=1e-19) Mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=4e-21) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=2e-22) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc00g142170.2.1 (e_value=6e-39) genomic_reference:SL2.40ch00 gene_region:17156703-17158111 transcript_region:SL2.40ch00:17156703..17158111- functional_description:"RNA-dependent RNA polymerase (AHRD V1 *-*- Q18L78_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00019382g0001.1 protein NbS00008400g0003.1 protein NbS00017573g0002.1 protein ; (*GB) gi|224127997|ref|XP_002329229.1| (e_value=7e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-17) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT1G23300.1 (e_value=1e-25) | Symbols: | MATE efflux family protein | chr1:8263827-8266048 REVERSE LENGTH=515;; (*ITAG) Solyc05g013470.2.1 (e_value=2e-39) genomic_reference:SL2.40ch05 gene_region:6680451-6685550 transcript_region:SL2.40ch05:6680451..6685550+ go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00013240g0006.1 protein ; (*GB) gi|121702361|ref|XP_001269445.1| (e_value=1e-16) RNase H domain protein [Aspergillus clavatus NRRL 1]; NbS00026507g0002.1 protein ; (*GB) gi|225434223|ref|XP_002275875.1| (e_value=4e-150) PREDICTED: transcription factor tau subunit sfc1-like [Vitis vinifera];; (*SWP) sp|Q9Y5Q8|TF3C5_HUMAN (e_value=1e-23) General transcription factor 3C polypeptide 5 OS=Homo sapiens GN=GTF3C5 PE=1 SV=2;; (*TAIR) AT5G24450.1 (e_value=1e-124) | Symbols: | Transcription factor IIIC, subunit 5 | chr5:8348780-8353130 FORWARD LENGTH=554;; (*ITAG) Solyc12g011180.1.1 (e_value=8e-117) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4021936-4033273 transcript_region:SL2.40ch12:4021936..4033273- functional_description:"General transcription factor 3C polypeptide 5 (AHRD V1 *-*- TF3C5_HUMAN); contains Interpro domain(s) IPR019136 Transcription factor IIIC, subunit 5 "; NbS00025689g0001.1 protein NbS00020529g0001.1 protein NbS00025062g0001.1 protein NbS00000652g0202.1 protein NbS00003488g0002.1 protein NbS00003488g0004.1 protein ; (*GB) gi|21311775|gb|AAM46847.1|AF498264_1 (e_value=6e-33) steroleosin-B [Sesamum indicum];; (*TAIR) AT4G10020.1 (e_value=2e-30) | Symbols: AtHSD5, HSD5 | hydroxysteroid dehydrogenase 5 | chr4:6268363-6270179 FORWARD LENGTH=389;; (*ITAG) Solyc06g064650.2.1 (e_value=5e-34) genomic_reference:SL2.40ch06 gene_region:36682986-36685667 transcript_region:SL2.40ch06:36682986..36685667- go_terms:GO:0003845 functional_description:"11-beta-hydroxysteroid dehydrogenase-like (AHRD V1 **** Q9LUF1_ARATH); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0003845 NbS00034842g0002.1 protein ; (*GB) gi|356550356|ref|XP_003543553.1| (e_value=3e-33) PREDICTED: uncharacterized protein YMR315W-like [Glycine max];; (*TAIR) AT3G20790.1 (e_value=1e-25) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:7268802-7271099 FORWARD LENGTH=355;; (*ITAG) Solyc01g006630.2.1 (e_value=4e-42) genomic_reference:SL2.40ch01 gene_region:1223346-1230598 transcript_region:SL2.40ch01:1223346..1230598- go_terms:GO:0008152,GO:0016491 functional_description:"Oxidoreductase family protein (AHRD V1 ***- D7KZW5_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152,GO:0016491 NbS00058180g0001.1 protein NbS00013847g0001.1 protein NbS00015981g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=9e-34) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc06g065250.1.1 (e_value=3e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37076027-37077919 transcript_region:SL2.40ch06:37076027..37077919- go_terms:GO:0008270 functional_description:"Mutator-like transposase-like protein (AHRD V1 ***- Q9FFD3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00015981g0005.1 protein ; (*ITAG) Solyc03g118070.2.1 (e_value=7e-19) genomic_reference:SL2.40ch03 gene_region:61101249-61108353 transcript_region:SL2.40ch03:61101249..61108353+ go_terms:GO:0005515,GO:0030295 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0005515,GO:0030295 NbS00022640g0002.1 protein ; (*GB) gi|224128542|ref|XP_002320358.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|O82253|SETH6_ARATH (e_value=2e-36) BTB/POZ domain-containing protein SETH6 OS=Arabidopsis thaliana GN=SETH6 PE=2 SV=1;; (*TAIR) AT2G47860.1 (e_value=2e-37) | Symbols: | Phototropic-responsive NPH3 family protein | chr2:19599979-19602088 FORWARD LENGTH=635;; (*ITAG) Solyc09g061250.2.1 (e_value=2e-26) genomic_reference:SL2.40ch09 gene_region:53983844-53986396 transcript_region:SL2.40ch09:53983844..53986396- go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7MMM6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00049936g0001.1 protein NbS00037393g0003.1 protein NbS00022734g0001.1 protein NbS00037950g0003.1 protein NbS00037950g0004.1 protein NbC23356263g0001.1 protein ; (*GB) gi|359492508|ref|XP_002283711.2| (e_value=4e-30) PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Vitis vinifera];; (*SWP) sp|Q8H0T4|UPL2_ARATH (e_value=3e-16) E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3;; (*TAIR) AT1G70320.1 (e_value=2e-17) | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:26488745-26501281 REVERSE LENGTH=3658;; (*ITAG) Solyc04g076620.2.1 (e_value=2e-39) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00025702g0002.1 protein NbS00025702g0003.1 protein ; (*GB) gi|255551635|ref|XP_002516863.1| (e_value=4e-24) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g067700.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:68979290-68994801 transcript_region:SL2.40ch01:68979290..68994801- functional_description:"Unknown Protein (AHRD V1)"; NbS00005887g0001.1 protein NbS00012437g0004.1 protein NbC24599213g0001.1 protein ; (*ITAG) Solyc03g112820.2.1 (e_value=8e-14) genomic_reference:SL2.40ch03 gene_region:57183847-57188738 transcript_region:SL2.40ch03:57183847..57188738- go_terms:GO:0030529 functional_description:"U3 small nucleolar ribonucleoprotein protein MPP10 (AHRD V1 *-*- B0WQ74_CULQU); contains Interpro domain(s) IPR012173 U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p "; GO:0030529 NbS00041635g0001.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=9e-27) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=5e-13) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426; NbC24260725g0001.1 protein ; (*GB) gi|255581568|ref|XP_002531589.1| (e_value=9e-72) Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis];; (*SWP) sp|O49160|EIF3C_ARATH (e_value=3e-63) Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana GN=TIF3C1 PE=1 SV=2;; (*TAIR) AT3G56150.2 (e_value=2e-64) | Symbols: EIF3C | eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900;; (*ITAG) Solyc06g076150.2.1 (e_value=2e-76) genomic_reference:SL2.40ch06 gene_region:43667291-43671362 transcript_region:SL2.40ch06:43667291..43671362- go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit 8-like protein (AHRD V1 **** Q9LIL2_ARATH); contains Interpro domain(s) IPR008905 Eukaryotic translation initiation factor 3 subunit 8, N-terminal "; GO:0005515,GO:0003743 NbS00022219g0001.1 protein ; (*ITAG) Solyc06g010200.2.1 (e_value=7e-25) genomic_reference:SL2.40ch06 gene_region:5385221-5398335 transcript_region:SL2.40ch06:5385221..5398335- functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 *-*- D5LXF2_SCHMD)"; NbS00007537g0204.1 protein NbS00008158g0005.1 protein NbS00023100g0102.1 protein NbS00005355g0001.1 protein NbS00005355g0102.1 protein NbS00005355g0103.1 protein NbS00030960g0001.1 protein NbS00030960g0002.1 protein ; (*GB) gi|57013905|ref|YP_173378.1| (e_value=1e-15) hypothetical protein NitaMp032 [Nicotiana tabacum]; NbS00030960g0004.1 protein NbS00013618g0001.1 protein NbS00039199g0001.1 protein ; (*GB) gi|147866331|emb|CAN79916.1| (e_value=2e-25) hypothetical protein VITISV_005428 [Vitis vinifera];; (*SWP) sp|Q9XEE8|P2C30_ARATH (e_value=1e-21) Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1;; (*TAIR) AT2G40180.1 (e_value=9e-23) | Symbols: ATHPP2C5, PP2C5 | phosphatase 2C5 | chr2:16782522-16784014 FORWARD LENGTH=390;; (*ITAG) Solyc05g052520.2.1 (e_value=9e-30) genomic_reference:SL2.40ch05 gene_region:61892748-61895062 transcript_region:SL2.40ch05:61892748..61895062- go_terms:GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- Q3V656_SOLTU); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00060135g0003.1 protein ; (*ITAG) Solyc11g065520.1.1 (e_value=6e-19) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00004352g0002.1 protein NbS00024408g0001.1 protein ; (*GB) gi|225438748|ref|XP_002282786.1| (e_value=2e-158) PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera];; (*SWP) sp|Q55G10|PNCB_DICDI (e_value=4e-95) Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1;; (*TAIR) AT4G36940.1 (e_value=8e-146) | Symbols: NAPRT1 | nicotinate phosphoribosyltransferase 1 | chr4:17416938-17419883 FORWARD LENGTH=559;; (*ITAG) Solyc02g093290.2.1 (e_value=2e-180) genomic_reference:SL2.40ch02 gene_region:48771224-48779373 transcript_region:SL2.40ch02:48771224..48779373+ go_terms:GO:0004516 functional_description:"Nicotinate phosphoribosyltransferase-like protein (AHRD V1 **** Q6XQM5_MEDTR); contains Interpro domain(s) IPR006405 Nicotinate phosphoribosyltransferase putative "; GO:0004516 NbS00008029g0001.1 protein NbS00008029g0003.1 protein ; (*GB) gi|224095196|ref|XP_002310359.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|P24555|PTRB_ECOLI (e_value=5e-15) Protease 2 OS=Escherichia coli (strain K12) GN=ptrB PE=1 SV=2;; (*TAIR) AT1G50380.1 (e_value=7e-21) | Symbols: | Prolyl oligopeptidase family protein | chr1:18662480-18666185 FORWARD LENGTH=710;; (*ITAG) Solyc02g050240.2.1 (e_value=2e-37) genomic_reference:SL2.40ch02 gene_region:24920469-24930852 transcript_region:SL2.40ch02:24920469..24930852+ go_terms:GO:0006508 functional_description:"Oligopeptidase (Protease II) (AHRD V1 ***- A6EQV2_9BACT); contains Interpro domain(s) IPR002470 Peptidase S9A, prolyl oligopeptidase "; GO:0006508 NbS00008029g0202.1 protein NbS00033171g0001.1 protein ; (*GB) gi|224055775|ref|XP_002298647.1| (e_value=3e-21) GRAS family transcription factor [Populus trichocarpa];; (*ITAG) Solyc02g094340.1.1 (e_value=1e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49472579-49475075 transcript_region:SL2.40ch02:49472579..49475075+ functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 *--- A1YWW2_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00033171g0002.1 protein ; (*GB) gi|359488458|ref|XP_002274834.2| (e_value=4e-114) PREDICTED: DELLA protein GAI1-like [Vitis vinifera];; (*SWP) sp|Q8S4W7|GAI1_VITVI (e_value=1e-47) DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1;; (*TAIR) AT3G03450.1 (e_value=5e-46) | Symbols: RGL2 | RGA-like 2 | chr3:819636-821279 REVERSE LENGTH=547;; (*ITAG) Solyc02g094340.1.1 (e_value=1e-119) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:49472579-49475075 transcript_region:SL2.40ch02:49472579..49475075+ functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 *--- A1YWW2_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00020686g0102.1 protein NbS00051488g0001.1 protein ; (*GB) gi|357511469|ref|XP_003626023.1| (e_value=2e-12) Replication factor A protein [Medicago truncatula]; NbC23778225g0001.1 protein ; (*GB) gi|297736545|emb|CBI25416.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L5Z7|SNX2A_ARATH (e_value=2e-36) Sorting nexin 2A OS=Arabidopsis thaliana GN=SNX2A PE=1 SV=1;; (*TAIR) AT5G58440.1 (e_value=2e-37) | Symbols: SNX2a | sorting nexin 2A | chr5:23624154-23626676 REVERSE LENGTH=587;; (*ITAG) Solyc06g050550.2.1 (e_value=2e-35) genomic_reference:SL2.40ch06 gene_region:29742430-29749862 transcript_region:SL2.40ch06:29742430..29749862+ go_terms:GO:0005543 functional_description:"Sorting nexin 1 (AHRD V1 ***- Q70YZ8_BRAOL); contains Interpro domain(s) IPR001683 Phox-like "; GO:0005543 NbC24686985g0001.1 protein ; (*GB) gi|356513910|ref|XP_003525651.1| (e_value=1e-67) PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max];; (*TAIR) AT2G26890.1 (e_value=1e-55) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=6e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00005720g0003.1 protein NbS00005720g0102.1 protein NbS00005720g0103.1 protein NbS00007973g0002.1 protein NbS00019577g0001.1 protein ; (*GB) gi|147781907|emb|CAN69929.1| (e_value=6e-52) hypothetical protein VITISV_037143 [Vitis vinifera];; (*TAIR) AT2G17080.1 (e_value=3e-33) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263;; (*ITAG) Solyc02g083120.1.1 (e_value=2e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41214861-41215814 transcript_region:SL2.40ch02:41214861..41215814+ functional_description:"CM0216.240.nc protein (AHRD V1 ***- B0BLH5_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00019577g0002.1 protein NbS00000771g0001.1 protein NbS00026103g0001.1 protein ; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=1e-99) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=3e-101) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT3G08580.2 (e_value=5e-69) | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605706-2607030 REVERSE LENGTH=381;; (*ITAG) Solyc11g062130.1.1 (e_value=2e-97) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00020427g0002.1 protein NbS00020427g0202.1 protein NbS00017128g0003.1 protein ; (*GB) gi|147836498|emb|CAN66361.1| (e_value=1e-40) hypothetical protein VITISV_014694 [Vitis vinifera];; (*SWP) sp|O80452|AMPD_ARATH (e_value=1e-36) AMP deaminase OS=Arabidopsis thaliana GN=AMPD PE=1 SV=2;; (*TAIR) AT2G38280.2 (e_value=9e-38) | Symbols: FAC1, ATAMPD | AMP deaminase, putative / myoadenylate deaminase, putative | chr2:16033767-16038793 REVERSE LENGTH=839;; (*ITAG) Solyc05g006910.2.1 (e_value=3e-51) genomic_reference:SL2.40ch05 gene_region:1501303-1512471 transcript_region:SL2.40ch05:1501303..1512471- go_terms:GO:0042802,GO:0003876 functional_description:"AMP deaminase (AHRD V1 **** D3BRS6_POLPA); contains Interpro domain(s) IPR006329 AMP deaminase "; GO:0042802,GO:0003876 NbS00051686g0002.1 protein NbS00029565g0002.1 protein NbS00013897g0001.1 protein NbS00013897g0002.1 protein NbS00006215g0002.1 protein NbS00005821g0001.1 protein ; (*GB) gi|255549373|ref|XP_002515740.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G05270.1 (e_value=2e-11) | Symbols: | TraB family protein | chr1:1531806-1534305 REVERSE LENGTH=371;; (*ITAG) Solyc12g005780.1.1 (e_value=6e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:428787-434218 transcript_region:SL2.40ch12:428787..434218+ functional_description:"TraB family protein (AHRD V1 ***- D7KED1_ARALY); contains Interpro domain(s) IPR002816 Pheromone shutdown-related, TraB "; NbS00009669g0201.1 protein NbS00021189g0001.1 protein ; (*ITAG) Solyc08g076140.2.1 (e_value=3e-20) genomic_reference:SL2.40ch08 gene_region:57333765-57341381 transcript_region:SL2.40ch08:57333765..57341381+ go_terms:GO:0016310 functional_description:"Phosphomevalonate kinase (AHRD V1 ***- Q944G1_HEVBR); contains Interpro domain(s) IPR016005 Phosphomevalonate kinase, ERG8 "; GO:0016310 NbS00022307g0005.1 protein NbS00005115g0002.1 protein NbS00016051g0103.1 protein NbS00029676g0001.1 protein NbS00004700g0003.1 protein NbS00007276g0001.1 protein ; (*ITAG) Solyc02g062070.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:28231047-28232074 transcript_region:SL2.40ch02:28231047..28232074+ go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00000019g0001.1 protein NbS00014811g0101.1 protein NbS00020494g0001.1 protein ; (*GB) gi|224101091|ref|XP_002312138.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g009690.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:3633968-3638512 transcript_region:SL2.40ch06:3633968..3638512- go_terms:GO:0005488 functional_description:"cDNA clone J033051C12 full insert sequence (AHRD V1 *-*- B7EME2_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00038086g0101.1 protein NbS00000092g0001.1 protein ; (*GB) gi|297733762|emb|CBI15009.3| (e_value=8e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g112820.2.1 (e_value=5e-27) genomic_reference:SL2.40ch03 gene_region:57183847-57188738 transcript_region:SL2.40ch03:57183847..57188738- go_terms:GO:0030529 functional_description:"U3 small nucleolar ribonucleoprotein protein MPP10 (AHRD V1 *-*- B0WQ74_CULQU); contains Interpro domain(s) IPR012173 U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p "; GO:0030529 NbS00000092g0006.1 protein NbS00000092g0007.1 protein ; (*GB) gi|225441866|ref|XP_002284228.1| (e_value=2e-21) PREDICTED: mitochondrial GTPase 1 isoform 1 [Vitis vinifera];; (*TAIR) AT2G41670.1 (e_value=9e-21) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17374118-17376177 FORWARD LENGTH=386;; (*ITAG) Solyc10g080070.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60791938-60795119 transcript_region:SL2.40ch10:60791938..60795119+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7LHA2_ARALY); contains Interpro domain(s) IPR002917 GTP-binding protein, HSR1-related "; GO:0003924 NbS00058694g0002.1 protein NbS00010830g0001.1 protein NbS00014477g0002.1 protein NbC23187663g0001.1 protein ; (*GB) gi|356567589|ref|XP_003552000.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100815002 [Glycine max];; (*TAIR) AT1G24160.2 (e_value=8e-24) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G70100.3). | chr1:8553669-8555830 REVERSE LENGTH=540;; (*ITAG) Solyc05g006490.2.1 (e_value=3e-30) genomic_reference:SL2.40ch05 gene_region:1112454-1117445 transcript_region:SL2.40ch05:1112454..1117445- functional_description:"F3I6.9 protein (AHRD V1 *-*- O48683_ARATH)"; NbS00004355g0003.1 protein NbS00025184g0001.1 protein NbC24817981g0001.1 protein ; (*GB) gi|75164750|sp|Q948X8.1|MTNA_TOBAC (e_value=3e-71) RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein;; (*SWP) sp|Q948X8|MTNA_TOBAC (e_value=9e-73) Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1;; (*TAIR) AT2G05830.4 (e_value=1e-61) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr2:2229964-2231839 FORWARD LENGTH=328;; (*ITAG) Solyc08g022210.2.1 (e_value=4e-70) genomic_reference:SL2.40ch08 gene_region:14105526-14113435 transcript_region:SL2.40ch08:14105526..14113435- go_terms:GO:0003743 functional_description:"Methylthioribose-1-phosphate isomerase (AHRD V1 ***- B6TZD1_MAIZE); contains Interpro domain(s) IPR005251 Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase "; GO:0003743 NbS00035773g0001.1 protein NbS00015231g0003.1 protein NbS00017468g0001.1 protein NbS00009642g0001.1 protein ; (*GB) gi|255544772|ref|XP_002513447.1| (e_value=4e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g006600.1.1 (e_value=6e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1201288-1207906 transcript_region:SL2.40ch01:1201288..1207906- go_terms:GO:0008152,GO:0016740,GO:0031177,GO:0048037,GO:0000036,GO:0016491,GO:0055114 functional_description:"Non-ribosomal peptide synthetase (AHRD V1 *-*- D0BWJ8_9GAMM); contains Interpro domain(s) IPR011614 Catalase, N-terminal "; GO:0008152,GO:0016740,GO:0031177,GO:0048037,GO:0000036,GO:0016491,GO:0055114 NbS00012749g0102.1 protein NbS00017675g0001.1 protein NbS00017675g0005.1 protein NbS00018783g0003.1 protein NbS00048774g0001.1 protein NbS00006622g0001.1 protein NbS00004744g0002.1 protein ; (*GB) gi|388520231|gb|AFK48177.1| (e_value=1e-15) unknown [Medicago truncatula]; NbS00019957g0002.1 protein NbS00016562g0001.1 protein NbS00003413g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-34) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g111480.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89460929-89464479 transcript_region:SL2.40ch01:89460929..89464479+ functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00002317g0002.1 protein NbS00016018g0005.1 protein ; (*GB) gi|224141047|ref|XP_002323886.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT5G15430.1 (e_value=1e-21) | Symbols: | Plant calmodulin-binding protein-related | chr5:5010180-5011616 FORWARD LENGTH=478;; (*ITAG) Solyc06g069620.1.1 (e_value=1e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:39745485-39746951 transcript_region:SL2.40ch06:39745485..39746951- functional_description:"Genomic DNA chromosome 5 P1 clone MXM12 (AHRD V1 *-*- Q9SDA2_ARATH); contains Interpro domain(s) IPR012417 Calmodulin-binding, plant "; NbS00016018g0007.1 protein ; (*GB) gi|302143436|emb|CBI21997.3| (e_value=1e-70) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G42700.1 (e_value=4e-65) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport, vesicle docking involved in exocytosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:17778464-17782034 FORWARD LENGTH=838;; (*ITAG) Solyc12g013950.1.1 (e_value=1e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4775569-4784508 transcript_region:SL2.40ch12:4775569..4784508- go_terms:GO:0016192 functional_description:"AT2G42700-like protein (Fragment) (AHRD V1 *-*- D6PPI9_9BRAS); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0016192 NbS00017277g0002.1 protein NbC24368450g0001.1 protein ; (*GB) gi|338222858|gb|AEI87569.1| (e_value=2e-24) cellulose synthase catalytic subunit protein [Nicotiana tabacum];; (*SWP) sp|Q8L778|CESA5_ARATH (e_value=7e-23) Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2;; (*TAIR) AT5G09870.1 (e_value=6e-24) | Symbols: CESA5 | cellulose synthase 5 | chr5:3073356-3077974 FORWARD LENGTH=1069;; (*ITAG) Solyc04g071650.2.1 (e_value=5e-27) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00021169g0101.1 protein NbS00011913g0002.1 protein NbS00011913g0003.1 protein NbS00029319g0001.1 protein ; (*GB) gi|359806174|ref|NP_001240944.1| (e_value=2e-25) uncharacterized protein LOC100808070 [Glycine max];; (*SWP) sp|Q93Y40|ORP3C_ARATH (e_value=4e-23) Oxysterol-binding protein-related protein 3C OS=Arabidopsis thaliana GN=ORP3C PE=2 SV=1;; (*TAIR) AT5G59420.1 (e_value=3e-24) | Symbols: ORP3C | OSBP(oxysterol binding protein)-related protein 3C | chr5:23961731-23964623 FORWARD LENGTH=457;; (*ITAG) Solyc10g084800.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63532664-63539460 transcript_region:SL2.40ch10:63532664..63539460+ go_terms:GO:0008202 functional_description:"Oxysterol-binding protein (AHRD V1 ***- Q6ST25_SOLTU); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008202 NbS00011177g0002.1 protein NbS00017218g0004.1 protein NbS00060103g0001.1 protein NbS00048684g0002.1 protein NbS00051838g0001.1 protein NbS00005452g0001.1 protein NbC24343292g0001.1 protein ; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=6e-28) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=3e-21) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=2e-22) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc01g095390.2.1 (e_value=3e-48) genomic_reference:SL2.40ch01 gene_region:78423741-78426862 transcript_region:SL2.40ch01:78423741..78426862+ functional_description:"SKIP interacting protein 7 (Fragment) (AHRD V1 *-*- B8Q893_ORYSI)"; NbS00006937g0001.1 protein ; (*ITAG) Solyc09g090630.1.1 (e_value=1e-84) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:65427645-65432748 transcript_region:SL2.40ch09:65427645..65432748- go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B6K768_SCHJY); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbC24897841g0001.1 protein ; (*GB) gi|356508448|ref|XP_003522969.1| (e_value=4e-53) PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max];; (*SWP) sp|Q42662|METE_SOLSC (e_value=2e-53) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2;; (*TAIR) AT3G03780.3 (e_value=1e-55) | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3:957602-960740 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=5e-56) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00025545g0002.1 protein NbS00019300g0001.1 protein NbS00019300g0002.1 protein NbS00034990g0001.1 protein ; (*ITAG) Solyc01g106730.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00009880g0102.1 protein NbS00002650g0002.1 protein ; (*GB) gi|297744835|emb|CBI38103.3| (e_value=3e-39) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G34970.1 (e_value=4e-25) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=6e-51) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00041275g0001.1 protein NbS00023741g0001.1 protein NbS00023618g0001.1 protein NbS00023618g0003.1 protein NbS00016170g0003.1 protein NbS00016899g0003.1 protein NbS00004668g0001.1 protein NbC23694632g0001.1 protein ; (*GB) gi|356532958|ref|XP_003535036.1| (e_value=3e-37) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=1e-33) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=1e-34) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc03g117520.1.1 (e_value=3e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60711082-60712938 transcript_region:SL2.40ch03:60711082..60712938+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00018924g0002.1 protein NbS00018924g0101.1 protein NbS00018141g0004.1 protein ; (*GB) gi|224062946|ref|XP_002300942.1| (e_value=7e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT1G21480.2 (e_value=2e-41) | Symbols: | Exostosin family protein | chr1:7519372-7521426 REVERSE LENGTH=410;; (*ITAG) Solyc04g064680.2.1 (e_value=5e-67) genomic_reference:SL2.40ch04 gene_region:54942400-54948658 transcript_region:SL2.40ch04:54942400..54948658- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7KK15_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00016544g0003.1 protein ; (*GB) gi|350536181|ref|NP_001234745.1| (e_value=2e-21) mature anther-specific protein LAT61 [Solanum lycopersicum];; (*ITAG) Solyc12g089040.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62634158-62636323 transcript_region:SL2.40ch12:62634158..62636323+ go_terms:GO:0003700 functional_description:"BES1/BZR1 homolog protein 2 (AHRD V1 **-- BEH2_ARATH); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0003700 NbS00010384g0102.1 protein NbS00053855g0004.1 protein ; (*GB) gi|225432498|ref|XP_002277442.1| (e_value=1e-48) PREDICTED: uncharacterized protein LOC100257995 [Vitis vinifera];; (*TAIR) AT3G23540.2 (e_value=1e-35) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8445381-8448070 FORWARD LENGTH=423;; (*ITAG) Solyc01g080270.2.1 (e_value=4e-109) genomic_reference:SL2.40ch01 gene_region:72007308-72026968 transcript_region:SL2.40ch01:72007308..72026968- functional_description:"Alpha/beta hydrolase (AHRD V1 *--- C4IIG9_CLOBU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00014327g0002.1 protein NbS00005089g0103.1 protein NbS00005089g0104.1 protein NbS00005089g0105.1 protein NbS00009249g0001.1 protein NbS00009249g0004.1 protein NbS00009249g0005.1 protein ; (*GB) gi|224126525|ref|XP_002319859.1| (e_value=6e-18) predicted protein [Populus trichocarpa]; NbS00024279g0004.1 protein NbS00003615g0002.1 protein ; (*GB) gi|225456715|ref|XP_002274303.1| (e_value=2e-108) PREDICTED: ABC transporter A family member 7 [Vitis vinifera];; (*SWP) sp|Q1PEH6|AB3A_ARATH (e_value=2e-81) ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=3;; (*TAIR) AT3G47740.1 (e_value=1e-82) | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 | chr3:17600651-17604965 FORWARD LENGTH=932;; (*ITAG) Solyc03g113060.2.1 (e_value=2e-153) genomic_reference:SL2.40ch03 gene_region:57405362-57413188 transcript_region:SL2.40ch03:57405362..57413188- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RFW2_SELML); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbC23793509g0001.1 protein ; (*GB) gi|297814053|ref|XP_002874910.1| (e_value=2e-14) TOC159 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O81283|TC159_ARATH (e_value=1e-15) Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1;; (*TAIR) AT4G02510.1 (e_value=1e-16) | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | translocon at the outer envelope membrane of chloroplasts 159 | chr4:1104766-1109360 FORWARD LENGTH=1503;; (*ITAG) Solyc01g080780.2.1 (e_value=7e-27) genomic_reference:SL2.40ch01 gene_region:72526370-72529831 transcript_region:SL2.40ch01:72526370..72529831+ go_terms:GO:0004888 functional_description:"Translocase of chloroplast 34 (AHRD V1 *-*- B6TBT7_MAIZE); contains Interpro domain(s) IPR005690 Chloroplast protein import component Toc86/159 "; GO:0004888 NbS00028241g0001.1 protein NbS00005128g0001.1 protein NbS00021914g0002.1 protein NbS00002613g0001.1 protein ; (*GB) gi|255570992|ref|XP_002526447.1| (e_value=2e-162) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9STW5|MACP2_ARATH (e_value=4e-146) MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1;; (*TAIR) AT4G24290.2 (e_value=3e-147) | Symbols: | MAC/Perforin domain-containing protein | chr4:12594856-12597815 FORWARD LENGTH=606;; (*ITAG) Solyc01g103490.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:83848324-83854531 transcript_region:SL2.40ch01:83848324..83854531+ functional_description:"Necrotic spotted lesions 1 (Fragment) (AHRD V1 *-*- B6ZA21_HELAN); contains Interpro domain(s) IPR001862 Membrane attack complex component/perforin/complement C9 "; NbS00012895g0001.1 protein NbS00050553g0001.1 protein NbS00025157g0001.1 protein ; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=3e-31) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=8e-32) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=6e-33) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=3e-38) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00025157g0003.1 protein NbC23977387g0001.1 protein ; (*GB) gi|224074265|ref|XP_002304328.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT4G36080.3 (e_value=6e-23) | Symbols: | phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases | chr4:17059996-17077628 REVERSE LENGTH=3809;; (*ITAG) Solyc02g083900.2.1 (e_value=6e-36) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00033808g0002.1 protein NbS00000371g0001.1 protein NbS00032139g0001.1 protein NbS00030104g0003.1 protein NbS00013653g0001.1 protein NbS00003977g0103.1 protein NbS00018526g0001.1 protein ; (*GB) gi|359475125|ref|XP_003631592.1| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100854024 [Vitis vinifera];; (*ITAG) Solyc02g081640.2.1 (e_value=4e-88) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbC24395170g0001.1 protein ; (*GB) gi|225437963|ref|XP_002271401.1| (e_value=7e-16) PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9SK66|NDUA9_ARATH (e_value=3e-15) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=2 SV=2;; (*TAIR) AT2G20360.1 (e_value=2e-16) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402;; (*ITAG) Solyc09g064450.2.1 (e_value=3e-16) genomic_reference:SL2.40ch09 gene_region:57326433-57337506 transcript_region:SL2.40ch09:57326433..57337506+ go_terms:GO:0005515,GO:0008137 functional_description:"NADH dehydrogenase (Ubiquinone) (AHRD V1 **** D7FUY2_ECTSI); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0005515,GO:0008137 NbS00004185g0001.1 protein NbS00002922g0001.1 protein NbS00002922g0002.1 protein NbS00019868g0001.1 protein NbS00033974g0001.1 protein ; (*GB) gi|297745732|emb|CBI15788.3| (e_value=7e-32) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G51340.1 (e_value=6e-21) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:20863594-20867171 FORWARD LENGTH=726;; (*ITAG) Solyc09g055340.2.1 (e_value=6e-51) genomic_reference:SL2.40ch09 gene_region:35349469-35390562 transcript_region:SL2.40ch09:35349469..35390562- functional_description:"Cohesin loading complex subunit SCC4 homolog (AHRD V1 *-*- SCC4_MOUSE)"; NbS00000114g0001.1 protein NbS00009561g0004.1 protein ; (*ITAG) Solyc11g010620.1.1 (e_value=4e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbC24721690g0001.1 protein ; (*GB) gi|3122572|sp|Q43644.1|NDUS1_SOLTU (e_value=2e-55) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial; AltName: Full=76 kDa mitochondrial complex I subunit; AltName: Full=Complex I-76kD; Short=CI-76kD; AltName: Full=NADH-ubiquinone oxidoreductase 76 kDa subunit; Flags: Precursor;; (*SWP) sp|Q43644|NDUS1_SOLTU (e_value=7e-57) NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G37510.2 (e_value=3e-49) | Symbols: EMB1467, CI76 | NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897490-14900447 FORWARD LENGTH=748;; (*ITAG) Solyc11g011470.1.1 (e_value=4e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4520459-4526103 transcript_region:SL2.40ch11:4520459..4526103- go_terms:GO:0016020,GO:0051536,GO:0016491,GO:0055114 functional_description:"NADH-ubiquinone oxidoreductase subunit (AHRD V1 ***- B9T118_RICCO); contains Interpro domain(s) IPR010228 NADH:ubiquinone oxidoreductase, subunit G "; GO:0016020,GO:0051536,GO:0016491,GO:0055114 NbC24826348g0001.1 protein ; (*GB) gi|13631844|sp|P92792.1|TOM20_SOLTU (e_value=1e-28) RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit;; (*SWP) sp|P92792|TOM20_SOLTU (e_value=4e-30) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=2e-18) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g068130.2.1 (e_value=5e-32) genomic_reference:SL2.40ch02 gene_region:32744250-32750308 transcript_region:SL2.40ch02:32744250..32750308+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00019946g0101.1 protein NbS00022082g0001.1 protein NbS00052432g0001.1 protein NbC23996399g0001.1 protein ; (*GB) gi|225430926|ref|XP_002277168.1| (e_value=2e-47) PREDICTED: uncharacterized protein LOC100263239 [Vitis vinifera];; (*TAIR) AT1G65230.1 (e_value=8e-42) | Symbols: | Uncharacterized conserved protein (DUF2358) | chr1:24229167-24230764 FORWARD LENGTH=286;; (*ITAG) Solyc04g056580.2.1 (e_value=4e-57) genomic_reference:SL2.40ch04 gene_region:53690198-53692659 transcript_region:SL2.40ch04:53690198..53692659+ functional_description:"Homology to unknown gene (AHRD V1 ***- Q00YK5_OSTTA)"; NbS00013688g0003.1 protein NbC23954930g0001.1 protein ; (*GB) gi|147773160|emb|CAN75916.1| (e_value=4e-22) hypothetical protein VITISV_022159 [Vitis vinifera];; (*TAIR) AT4G22140.1 (e_value=2e-20) | Symbols: EBS | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:11728556-11730230 REVERSE LENGTH=234;; (*ITAG) Solyc07g049210.2.1 (e_value=1e-23) genomic_reference:SL2.40ch07 gene_region:56821477-56826195 transcript_region:SL2.40ch07:56821477..56826195- go_terms:GO:0003677,GO:0008270 functional_description:"BAH-PHD domain-containing protein (Fragment) (AHRD V1 **-- A9S8N5_PHYPA); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0003677,GO:0008270 NbS00022208g0002.1 protein NbS00056490g0001.1 protein NbS00054983g0001.1 protein ; (*GB) gi|290767094|gb|ADD60395.1| (e_value=1e-47) thioredoxin peroxidase 1 [Solanum tuberosum];; (*SWP) sp|Q9XEX2|PRX2B_ARATH (e_value=7e-44) Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1;; (*TAIR) AT1G65980.1 (e_value=5e-45) | Symbols: TPX1 | thioredoxin-dependent peroxidase 1 | chr1:24559524-24560753 REVERSE LENGTH=162;; (*ITAG) Solyc07g020860.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:14295272-14300912 transcript_region:SL2.40ch07:14295272..14300912+ go_terms:GO:0008379 functional_description:"Peroxiredoxin (AHRD V1 **-- D2D300_GOSHI); contains Interpro domain(s) IPR013740 Redoxin "; GO:0008379 NbS00028307g0002.1 protein NbS00040729g0001.1 protein NbS00021979g0001.1 protein NbS00037244g0002.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=2e-19) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=6e-17) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=2e-21) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbC23922323g0001.1 protein ; (*GB) gi|297743431|emb|CBI36298.3| (e_value=6e-37) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SSR4|PPR77_ARATH (e_value=5e-29) Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1;; (*TAIR) AT1G52620.1 (e_value=4e-30) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:19603828-19606287 FORWARD LENGTH=819;; (*ITAG) Solyc03g116560.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:59980181-59982625 transcript_region:SL2.40ch03:59980181..59982625- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJI9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00019808g0001.1 protein NbS00028819g0001.1 protein ; (*GB) gi|225448345|ref|XP_002266989.1| (e_value=1e-20) PREDICTED: uncharacterized protein LOC100248425 [Vitis vinifera]; NbS00003629g0001.1 protein ; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=1e-52) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=4e-54) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=9e-31) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc05g053610.2.1 (e_value=2e-52) genomic_reference:SL2.40ch05 gene_region:62822197-62829504 transcript_region:SL2.40ch05:62822197..62829504- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL93_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00000611g0006.1 protein NbS00013683g0001.1 protein NbS00022228g0001.1 protein ; (*GB) gi|255566845|ref|XP_002524406.1| (e_value=6e-110) serine/threonine protein kinase, putative [Ricinus communis];; (*SWP) sp|Q9S713|STT7_ARATH (e_value=2e-106) Serine/threonine-protein kinase STN7, chloroplastic OS=Arabidopsis thaliana GN=STN7 PE=1 SV=1;; (*TAIR) AT1G68830.1 (e_value=2e-107) | Symbols: STN7 | STT7 homolog STN7 | chr1:25872654-25875473 REVERSE LENGTH=562;; (*ITAG) Solyc12g021280.1.1 (e_value=2e-122) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:15120633-15133486 transcript_region:SL2.40ch12:15120633..15133486- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q84V17_CHLRE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00000699g0001.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=1e-43) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*SWP) sp|Q9FI40|BAHD1_ARATH (e_value=1e-18) BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1;; (*TAIR) AT3G26040.1 (e_value=6e-30) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc01g105580.1.1 (e_value=9e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85473632-85474954 transcript_region:SL2.40ch01:85473632..85474954- go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase 2 (AHRD V1 **-* D8L7F0_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00004691g0002.1 protein NbS00023324g0001.1 protein NbS00019841g0003.1 protein ; (*ITAG) Solyc09g075530.2.1 (e_value=1e-19) genomic_reference:SL2.40ch09 gene_region:62727047-62731274 transcript_region:SL2.40ch09:62727047..62731274+ go_terms:GO:0005484 functional_description:"Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) (AHRD V1 **** D7G2Z0_ECTSI); contains Interpro domain(s) IPR010989 t-SNARE "; GO:0005484 NbS00028697g0001.1 protein NbS00016222g0004.1 protein NbS00011017g0002.1 protein NbC25779847g0001.1 protein ; (*GB) gi|224068394|ref|XP_002302735.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT4G02220.1 (e_value=7e-20) | Symbols: | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418;; (*ITAG) Solyc08g076440.2.1 (e_value=1e-31) genomic_reference:SL2.40ch08 gene_region:57613660-57618139 transcript_region:SL2.40ch08:57613660..57618139+ go_terms:GO:0005515 functional_description:"Programmed cell death protein 2 (AHRD V1 ***- B6TEZ7_MAIZE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0005515 NbS00001658g0001.1 protein ; (*GB) gi|359472893|ref|XP_003631209.1| (e_value=2e-17) PREDICTED: tetratricopeptide repeat protein 5 isoform 2 [Vitis vinifera];; (*ITAG) Solyc05g008420.2.1 (e_value=8e-19) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00021041g0001.1 protein NbS00017882g0002.1 protein NbS00044339g0001.1 protein ; (*GB) gi|208429106|gb|ACI26722.1| (e_value=2e-25) receptor-like kinase [Nicotiana glutinosa]; NbS00030946g0003.1 protein NbS00035992g0001.1 protein NbS00031469g0001.1 protein NbS00036642g0001.1 protein NbS00010634g0001.1 protein NbS00017071g0001.1 protein NbS00004670g0001.1 protein NbS00018907g0001.1 protein ; (*GB) gi|296084048|emb|CBI24436.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G27200.1 (e_value=4e-24) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:11625449-11627959 FORWARD LENGTH=537;; (*ITAG) Solyc11g071910.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52312893-52321825 transcript_region:SL2.40ch11:52312893..52321825+ go_terms:GO:0005515,GO:0005525 functional_description:"GTP-binding family protein (AHRD V1 **** D7KI21_ARALY); contains Interpro domain(s) IPR006073 GTP1/OBG "; GO:0005515,GO:0005525 NbS00001703g0202.1 protein NbS00007280g0103.1 protein NbS00035725g0002.1 protein NbS00016505g0002.1 protein NbS00047413g0001.1 protein NbS00020814g0005.1 protein ; (*GB) gi|357438171|ref|XP_003589361.1| (e_value=3e-17) hypothetical protein MTR_1g023370 [Medicago truncatula]; NbS00036544g0005.1 protein NbS00008987g0002.1 protein NbS00016370g0001.1 protein ; (*GB) gi|255553905|ref|XP_002517993.1| (e_value=6e-89) vacuolar membrane protein pep3, putative [Ricinus communis];; (*SWP) sp|P59015|VPS18_DANRE (e_value=2e-19) Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2;; (*TAIR) AT1G12470.1 (e_value=3e-81) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=1e-112) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00001876g0001.1 protein ; (*SWP) sp|P83326|PMEI_ACTDE (e_value=4e-13) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*ITAG) Solyc09g072950.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61125499-61125981 transcript_region:SL2.40ch09:61125499..61125981- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q2X5_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00004135g0001.1 protein NbS00044054g0002.1 protein ; (*GB) gi|225434431|ref|XP_002277592.1| (e_value=7e-141) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=2e-94) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=2e-95) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc06g050690.2.1 (e_value=5e-92) genomic_reference:SL2.40ch06 gene_region:29951249-29954201 transcript_region:SL2.40ch06:29951249..29954201- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00019995g0002.1 protein NbS00019950g0101.1 protein NbS00002805g0004.1 protein NbS00061683g0002.1 protein NbC25750669g0001.1 protein ; (*GB) gi|225440444|ref|XP_002271331.1| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100242633 [Vitis vinifera];; (*TAIR) AT2G37730.1 (e_value=2e-17) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=9e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00006626g0001.1 protein NbS00011683g0101.1 protein NbS00010244g0003.1 protein NbS00009303g0001.1 protein NbS00001000g0101.1 protein NbC25839966g0002.1 protein NbS00059328g0001.1 protein ; (*GB) gi|119391879|emb|CAF04055.2| (e_value=1e-39) S-adenosylmethionine transporter [Nicotiana benthamiana];; (*TAIR) AT4G39460.2 (e_value=7e-31) | Symbols: SAMC1 | S-adenosylmethionine carrier 1 | chr4:18356093-18358596 REVERSE LENGTH=325;; (*ITAG) Solyc04g051580.2.1 (e_value=7e-39) genomic_reference:SL2.40ch04 gene_region:50020620-50028376 transcript_region:SL2.40ch04:50020620..50028376- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00002598g0001.1 protein NbS00016690g0002.1 protein NbS00001400g0001.1 protein NbC23530677g0001.1 protein ; (*GB) gi|149927092|ref|ZP_01915350.1| (e_value=3e-32) carbamoyl-phosphate synthase small subunit [Limnobacter sp. MED105];; (*SWP) sp|A4SXM1|CARA_POLSQ (e_value=9e-28) Carbamoyl-phosphate synthase small chain OS=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) GN=carA PE=3 SV=1;; (*TAIR) AT3G27740.1 (e_value=4e-18) | Symbols: CARA | carbamoyl phosphate synthetase A | chr3:10281470-10283792 REVERSE LENGTH=430;; (*ITAG) Solyc03g115630.2.1 (e_value=5e-18) genomic_reference:SL2.40ch03 gene_region:59330578-59335551 transcript_region:SL2.40ch03:59330578..59335551+ go_terms:GO:0005515,GO:0016301 functional_description:"Carbamoyl-phosphate synthase small chain (AHRD V1 ***- B6TJA4_MAIZE); contains Interpro domain(s) IPR006274 Carbamoyl phosphate synthase, small subunit "; GO:0005515,GO:0016301 NbS00028135g0001.1 protein NbS00009004g0001.1 protein NbS00009004g0005.1 protein NbS00050616g0001.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=6e-13) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00021662g0001.1 protein NbS00021662g0002.1 protein NbS00034643g0001.1 protein NbC24587126g0001.1 protein ; (*GB) gi|388500596|gb|AFK38364.1| (e_value=2e-31) unknown [Lotus japonicus];; (*SWP) sp|Q4V7Z0|GPN3_XENLA (e_value=4e-22) GPN-loop GTPase 3 OS=Xenopus laevis GN=gpn3 PE=2 SV=1;; (*TAIR) AT4G12790.5 (e_value=7e-28) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:7517280-7518892 REVERSE LENGTH=271;; (*ITAG) Solyc09g020140.2.1 (e_value=2e-33) genomic_reference:SL2.40ch09 gene_region:18639148-18643856 transcript_region:SL2.40ch09:18639148..18643856- go_terms:GO:0005515 functional_description:"GPN-loop GTPase 3 (AHRD V1 ***- D3BV94_POLPA); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515 NbS00037901g0001.1 protein ; (*GB) gi|38096048|gb|AAR10887.1| (e_value=1e-125) inosine-5'-phosphate dehydrogenase [Nicotiana tabacum];; (*SWP) sp|Q9SA34|IMDH2_ARATH (e_value=4e-114) Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1;; (*TAIR) AT1G16350.1 (e_value=3e-115) | Symbols: | Aldolase-type TIM barrel family protein | chr1:5590951-5592872 FORWARD LENGTH=502;; (*ITAG) Solyc10g079500.1.1 (e_value=4e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60360530-60363081 transcript_region:SL2.40ch10:60360530..60363081+ go_terms:GO:0008152,GO:0055114 functional_description:"Inosine-5&apos-monophosphate dehydrogenase (AHRD V1 ***- A7XZM6_CAMSI); contains Interpro domain(s) IPR005990 IMP dehydrogenase "; GO:0008152,GO:0055114 NbS00014078g0001.1 protein ; (*ITAG) Solyc07g032230.2.1 (e_value=7e-16) genomic_reference:SL2.40ch07 gene_region:35885567-35891328 transcript_region:SL2.40ch07:35885567..35891328- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00020419g0101.1 protein NbS00050408g0001.1 protein NbC24137056g0001.1 protein ; (*GB) gi|225430654|ref|XP_002268225.1| (e_value=4e-19) PREDICTED: protein PIR-like [Vitis vinifera];; (*SWP) sp|Q5S2C3|PIR_ARATH (e_value=1e-18) Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=2;; (*TAIR) AT5G18410.1 (e_value=7e-20) | Symbols: PIR, KLK, PIR121, SRA1, PIRP, ATSRA1 | transcription activators | chr5:6097456-6104783 REVERSE LENGTH=1283;; (*ITAG) Solyc11g013280.1.1 (e_value=1e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:6186161-6211407 transcript_region:SL2.40ch11:6186161..6211407- functional_description:"Cytoplasmic FMR1 interacting protein 2 (AHRD V1 ***- A5A5E1_DANRE); contains Interpro domain(s) IPR008081 Cytoplasmic FMR1-interacting "; NbS00003743g0002.1 protein NbS00040287g0002.1 protein ; (*GB) gi|255566767|ref|XP_002524367.1| (e_value=4e-42) conserved hypothetical protein [Ricinus communis]; NbS00028883g0001.1 protein NbS00027210g0001.1 protein NbS00021697g0002.1 protein NbS00008985g0003.1 protein NbS00024798g0002.1 protein ; (*GB) gi|225441589|ref|XP_002281591.1| (e_value=3e-12) PREDICTED: importin-5 [Vitis vinifera];; (*TAIR) AT5G19820.1 (e_value=5e-13) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00034836g0001.1 protein NbS00034499g0001.1 protein ; (*GB) gi|255545924|ref|XP_002514022.1| (e_value=4e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G24580.1 (e_value=4e-35) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=1e-40) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00018088g0001.1 protein NbS00034853g0001.1 protein NbS00017293g0003.1 protein NbS00037301g0001.1 protein NbS00018241g0001.1 protein ; (*ITAG) Solyc09g005300.2.1 (e_value=5e-15) genomic_reference:SL2.40ch09 gene_region:224168-231807 transcript_region:SL2.40ch09:224168..231807- go_terms:GO:0004482 functional_description:"mRNA cap guanine-N7 methyltransferase (AHRD V1 **** B9SQY3_RICCO); contains Interpro domain(s) IPR016899 mRNA (guanine-N(7))-methyltransferase "; GO:0004482 NbS00042097g0001.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*ITAG) Solyc00g005980.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3916175-3916960 transcript_region:SL2.40ch00:3916175..3916960+ functional_description:"Zinc finger CCHC-type (AHRD V1 *--- Q1SKZ9_MEDTR)"; NbS00027420g0002.1 protein NbS00018615g0001.1 protein NbS00018615g0002.1 protein NbS00005860g0001.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00005860g0003.1 protein NbS00043468g0002.1 protein NbS00035663g0002.1 protein NbS00015988g0001.1 protein NbS00022076g0001.1 protein NbS00022076g0106.1 protein NbS00014003g0001.1 protein ; (*ITAG) Solyc06g007300.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1326150-1327928 transcript_region:SL2.40ch06:1326150..1327928- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbC23894786g0001.1 protein ; (*GB) gi|224091357|ref|XP_002309230.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0F9|K6PF1_ARATH (e_value=1e-30) 6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1;; (*TAIR) AT4G29220.1 (e_value=1e-31) | Symbols: PFK1 | phosphofructokinase 1 | chr4:14403621-14406071 REVERSE LENGTH=473;; (*ITAG) Solyc08g066100.2.1 (e_value=5e-38) genomic_reference:SL2.40ch08 gene_region:51736381-51744102 transcript_region:SL2.40ch08:51736381..51744102- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00000882g0001.1 protein NbS00008597g0001.1 protein NbS00013274g0001.1 protein NbC24222155g0001.1 protein NbS00013242g0001.1 protein NbS00019498g0004.1 protein ; (*GB) gi|147840535|emb|CAN70569.1| (e_value=4e-44) hypothetical protein VITISV_037497 [Vitis vinifera];; (*SWP) sp|Q8VYE2|TIM50_ARATH (e_value=2e-34) Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1;; (*TAIR) AT1G55900.1 (e_value=1e-35) | Symbols: TIM50, emb1860 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr1:20903163-20905420 FORWARD LENGTH=376;; (*ITAG) Solyc10g006020.2.1 (e_value=5e-48) genomic_reference:SL2.40ch10 gene_region:769462-778426 transcript_region:SL2.40ch10:769462..778426+ functional_description:"Mitochondrial import inner membrane translocase subunit tim50 (AHRD V1 *--- C8V8E4_EMENI); contains Interpro domain(s) IPR004274 NLI interacting factor "; NbS00003989g0002.1 protein NbS00003989g0003.1 protein NbS00003989g0004.1 protein NbS00010125g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-17) hypothetical protein [Nicotiana tabacum]; NbS00008609g0004.1 protein NbS00019549g0001.1 protein NbS00019549g0002.1 protein ; (*GB) gi|224127532|ref|XP_002329301.1| (e_value=8e-48) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q39214|RPM1_ARATH (e_value=2e-17) Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1;; (*TAIR) AT3G07040.1 (e_value=1e-18) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc02g070370.2.1 (e_value=2e-19) genomic_reference:SL2.40ch02 gene_region:34693304-34696556 transcript_region:SL2.40ch02:34693304..34696556- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00021266g0002.1 protein ; (*GB) gi|357453211|ref|XP_003596882.1| (e_value=2e-37) Histone deacetylase [Medicago truncatula];; (*SWP) sp|Q94EJ2|HDA8_ARATH (e_value=8e-32) Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1;; (*TAIR) AT1G08460.1 (e_value=6e-33) | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8 | chr1:2672527-2674469 FORWARD LENGTH=377;; (*ITAG) Solyc06g074080.2.1 (e_value=4e-47) genomic_reference:SL2.40ch06 gene_region:42180141-42183230 transcript_region:SL2.40ch06:42180141..42183230- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9HPV0_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0003714 NbS00019905g0001.1 protein NbS00008032g0001.1 protein NbS00008032g0002.1 protein ; (*GB) gi|57013999|ref|YP_173470.1| (e_value=6e-89) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=6e-67) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=1e-67) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=2e-96) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00008032g0003.1 protein ; (*GB) gi|11134048|sp|Q36450.1|NDUS2_NICSY (e_value=4e-78) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 2; AltName: Full=NADH dehydrogenase subunit 7;; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=1e-79) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=2e-75) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=7e-81) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00008032g0004.1 protein ; (*GB) gi|255579988|ref|XP_002530828.1| (e_value=5e-20) conserved hypothetical protein [Ricinus communis]; NbC23979353g0001.1 protein ; (*GB) gi|9758914|dbj|BAB09451.1| (e_value=2e-43) histone acetyltransferase [Arabidopsis thaliana];; (*SWP) sp|Q93ZR1|ELP3_ARATH (e_value=7e-45) Elongator complex protein 3 OS=Arabidopsis thaliana GN=HAG3 PE=1 SV=1;; (*TAIR) AT5G50320.1 (e_value=5e-46) | Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 | radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein | chr5:20481200-20484811 REVERSE LENGTH=565;; (*ITAG) Solyc03g110910.2.1 (e_value=6e-46) genomic_reference:SL2.40ch03 gene_region:55694999-55699481 transcript_region:SL2.40ch03:55694999..55699481- go_terms:GO:0008607 functional_description:"Histone acetyltransferase ELP3 family protein (AHRD V1 **-- Q22HD8_TETTH); contains Interpro domain(s) IPR005910 Histone acetyltransferase ELP3 "; GO:0008607 NbS00002564g0006.1 protein NbS00034892g0001.1 protein NbS00011236g0101.1 protein NbS00023585g0002.1 protein NbC23237767g0001.1 protein ; (*ITAG) Solyc01g060030.2.1 (e_value=9e-20) genomic_reference:SL2.40ch01 gene_region:62258951-62260745 transcript_region:SL2.40ch01:62258951..62260745+ functional_description:"Zinc finger CCHC domain-containing protein 10 (AHRD V1 *-*- B6TKA1_MAIZE)"; NbS00033062g0002.1 protein NbS00028188g0001.1 protein ; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=4e-35) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=7e-27) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005;; (*ITAG) Solyc02g094630.2.1 (e_value=2e-44) genomic_reference:SL2.40ch02 gene_region:49792861-49797173 transcript_region:SL2.40ch02:49792861..49797173- go_terms:GO:0005488 functional_description:"Importin 13 (AHRD V1 **-- B1ASJ5_MOUSE); contains Interpro domain(s) IPR013598 Exportin-1/Importin-beta-like "; GO:0005488 NbS00046514g0001.1 protein NbS00008686g0003.1 protein NbS00017077g0004.1 protein ; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=2e-23) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=1e-24) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=9e-26) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=8e-28) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00010312g0002.1 protein NbS00010312g0003.1 protein NbS00043260g0001.1 protein ; (*GB) gi|255542014|ref|XP_002512071.1| (e_value=2e-42) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9S7I6|RPK2_ARATH (e_value=5e-41) LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1;; (*TAIR) AT3G02130.1 (e_value=4e-42) | Symbols: RPK2, TOAD2, CLI1 | receptor-like protein kinase 2 | chr3:380726-384181 FORWARD LENGTH=1151;; (*ITAG) Solyc03g059490.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:27445978-27449355 transcript_region:SL2.40ch03:27445978..27449355+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00009227g0001.1 protein ; (*GB) gi|224111098|ref|XP_002315747.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=2e-18) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=2e-19) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=6e-20) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00058020g0002.1 protein NbC25426257g0001.1 protein ; (*SWP) sp|Q41364|SOT1_SPIOL (e_value=2e-13) 2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1;; (*TAIR) AT5G12860.2 (e_value=2e-14) | Symbols: DiT1 | dicarboxylate transporter 1 | chr5:4059850-4061919 REVERSE LENGTH=556;; (*ITAG) Solyc11g065830.1.1 (e_value=8e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48480319-48483811 transcript_region:SL2.40ch11:48480319..48483811- go_terms:GO:0016020 functional_description:"2-oxoglutarate/malate translocator-like protein (AHRD V1 **-- Q9LXV3_ARATH); contains Interpro domain(s) IPR001898 Sodium/sulphate symporter "; GO:0016020 NbS00048495g0001.1 protein ; (*GB) gi|359473233|ref|XP_003631273.1| (e_value=4e-28) PREDICTED: probable polygalacturonase At1g80170-like [Vitis vinifera];; (*TAIR) AT1G23460.1 (e_value=3e-30) | Symbols: | Pectin lyase-like superfamily protein | chr1:8327382-8329622 FORWARD LENGTH=460;; (*ITAG) Solyc09g098270.2.1 (e_value=6e-48) genomic_reference:SL2.40ch09 gene_region:67421613-67424776 transcript_region:SL2.40ch09:67421613..67424776+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9SLP3_CUCSA); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbC23347044g0001.1 protein ; (*GB) gi|218186618|gb|EEC69045.1| (e_value=3e-24) hypothetical protein OsI_37876 [Oryza sativa Indica Group];; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=2e-25) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT5G50920.1 (e_value=2e-26) | Symbols: CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC homologue 1 | chr5:20715710-20719800 REVERSE LENGTH=929;; (*ITAG) Solyc12g042060.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbC23767124g0001.1 protein ; (*GB) gi|297817404|ref|XP_002876585.1| (e_value=2e-35) hypothetical protein ARALYDRAFT_486559 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G60850.1 (e_value=7e-38) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:22482053-22483999 FORWARD LENGTH=648;; (*ITAG) Solyc01g091390.2.1 (e_value=6e-39) genomic_reference:SL2.40ch01 gene_region:76778729-76784064 transcript_region:SL2.40ch01:76778729..76784064- functional_description:"Unknown Protein (AHRD V1)"; NbS00001277g0005.1 protein NbC25658761g0001.1 protein ; (*ITAG) Solyc06g005960.2.1 (e_value=8e-51) genomic_reference:SL2.40ch06 gene_region:942001-944304 transcript_region:SL2.40ch06:942001..944304+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030645g0001.1 protein NbS00023389g0001.1 protein ; (*ITAG) Solyc03g006350.2.1 (e_value=1e-43) genomic_reference:SL2.40ch03 gene_region:943458-946178 transcript_region:SL2.40ch03:943458..946178+ go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 27 (AHRD V1 *-*- C3H27_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00016185g0004.1 protein ; (*GB) gi|295322838|gb|ADG01868.1| (e_value=1e-98) plastid RNA-binding protein [Nicotiana benthamiana];; (*TAIR) AT3G48500.1 (e_value=1e-57) | Symbols: PDE312, PTAC10 | Nucleic acid-binding, OB-fold-like protein | chr3:17962209-17965408 FORWARD LENGTH=668;; (*ITAG) Solyc03g111050.2.1 (e_value=3e-84) genomic_reference:SL2.40ch03 gene_region:55775851-55786202 transcript_region:SL2.40ch03:55775851..55786202+ go_terms:GO:0003723 functional_description:"Plastid RNA-binding protein (AHRD V1 **-- D6QX33_NICBE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0003723 NbS00050453g0001.1 protein NbC24070121g0001.1 protein ; (*GB) gi|356513961|ref|XP_003525676.1| (e_value=5e-38) PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max];; (*TAIR) AT5G40480.1 (e_value=5e-31) | Symbols: EMB3012 | embryo defective 3012 | chr5:16213361-16223982 FORWARD LENGTH=1923;; (*ITAG) Solyc02g070810.2.1 (e_value=5e-59) genomic_reference:SL2.40ch02 gene_region:34985924-34993977 transcript_region:SL2.40ch02:34985924..34993977- go_terms:GO:0032259,GO:0006810 functional_description:"Nuclear pore membrane glycoprotein 210 (AHRD V1 ***- PO210_HUMAN); contains Interpro domain(s) IPR008964 Invasin/intimin cell-adhesion "; GO:0032259,GO:0006810 NbC24135134g0001.1 protein NbS00041699g0001.1 protein ; (*GB) gi|359480437|ref|XP_002263195.2| (e_value=1e-26) PREDICTED: protein misato homolog 1-like [Vitis vinifera];; (*TAIR) AT4G37190.2 (e_value=3e-26) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17507453-17509512 FORWARD LENGTH=516;; (*ITAG) Solyc01g100190.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00006745g0001.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00052979g0002.1 protein NbS00000490g0001.1 protein NbS00028310g0003.1 protein ; (*GB) gi|147778297|emb|CAN60817.1| (e_value=1e-61) hypothetical protein VITISV_033220 [Vitis vinifera];; (*TAIR) AT3G05480.2 (e_value=6e-55) | Symbols: ATRAD9, RAD9 | cell cycle checkpoint control protein family | chr3:1585383-1588238 FORWARD LENGTH=420;; (*ITAG) Solyc10g044780.1.1 (e_value=2e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23228575-23235285 transcript_region:SL2.40ch10:23228575..23235285- go_terms:GO:0006281 functional_description:"Cell cycle checkpoint control protein family (AHRD V1 **-- D7L3V1_ARALY); contains Interpro domain(s) IPR007268 Rad9 "; GO:0006281 NbC24045602g0001.1 protein ; (*GB) gi|359473731|ref|XP_003631353.1| (e_value=2e-20) PREDICTED: mannosyl-oligosaccharide glucosidase [Vitis vinifera];; (*TAIR) AT1G67490.1 (e_value=1e-21) | Symbols: GCS1, KNF | glucosidase 1 | chr1:25280633-25286581 REVERSE LENGTH=852;; (*ITAG) Solyc05g015220.2.1 (e_value=1e-25) genomic_reference:SL2.40ch05 gene_region:10075997-10095708 transcript_region:SL2.40ch05:10075997..10095708- go_terms:GO:0004573,GO:0004558 functional_description:"Mannosyl-oligosaccharide glucosidase (AHRD V1 **** B0WV10_CULQU); contains Interpro domain(s) IPR004888 Glycoside hydrolase, family 63 "; GO:0004573,GO:0004558 NbS00001765g0002.1 protein NbS00056156g0001.1 protein ; (*GB) gi|356556906|ref|XP_003546761.1| (e_value=7e-28) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max];; (*TAIR) AT1G17110.1 (e_value=1e-11) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=924;; (*ITAG) Solyc07g061780.2.1 (e_value=3e-79) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00038058g0002.1 protein NbS00013685g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013516g0002.1 protein ; (*GB) gi|357123026|ref|XP_003563214.1| (e_value=2e-47) PREDICTED: zinc finger matrin-type protein 2-like [Brachypodium distachyon];; (*SWP) sp|Q9CPW7|ZMAT2_MOUSE (e_value=4e-26) Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1;; (*TAIR) AT3G05760.1 (e_value=3e-48) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr3:1707981-1709910 FORWARD LENGTH=202;; (*ITAG) Solyc01g100330.2.1 (e_value=6e-50) genomic_reference:SL2.40ch01 gene_region:82155691-82161827 transcript_region:SL2.40ch01:82155691..82161827+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger matrin type 2 (AHRD V1 ***- Q6DEN8_XENTR); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbC23261838g0001.1 protein ; (*ITAG) Solyc02g082130.1.1 (e_value=7e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:40430556-40431629 transcript_region:SL2.40ch02:40430556..40431629- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR007019 Surfeit locus 6 "; NbC25818888g0001.1 protein NbS00000258g0001.1 protein NbS00045989g0001.1 protein NbS00002864g0001.1 protein ; (*GB) gi|225426022|ref|XP_002273571.1| (e_value=2e-145) PREDICTED: crooked neck-like protein 1 [Vitis vinifera];; (*SWP) sp|Q5K654|CLF1_PARBR (e_value=3e-85) Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1;; (*TAIR) AT5G41770.1 (e_value=3e-138) | Symbols: | crooked neck protein, putative / cell cycle protein, putative | chr5:16718021-16720936 FORWARD LENGTH=705;; (*ITAG) Solyc12g056080.1.1 (e_value=3e-171) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47407415-47416435 transcript_region:SL2.40ch12:47407415..47416435+ go_terms:GO:0005488,GO:0005622 functional_description:"Pre-mRNA-splicing factor CLF1 (AHRD V1 ***- C5JTS1_AJEDS); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0005622 NbS00008355g0003.1 protein NbS00046472g0001.1 protein ; (*GB) gi|224054817|ref|XP_002298369.1| (e_value=2e-75) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39570.1 (e_value=2e-64) | Symbols: | ACT domain-containing protein | chr2:16507963-16509741 FORWARD LENGTH=411;; (*ITAG) Solyc05g054620.2.1 (e_value=3e-61) genomic_reference:SL2.40ch05 gene_region:63640937-63645239 transcript_region:SL2.40ch05:63640937..63645239+ go_terms:GO:0008152 functional_description:"Amino acid binding protein (AHRD V1 **-- B6TDN9_MAIZE); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00054407g0003.1 protein NbS00003622g0201.1 protein NbS00003622g0202.1 protein NbC24774998g0001.1 protein ; (*GB) gi|356543710|ref|XP_003540303.1| (e_value=5e-61) PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max];; (*SWP) sp|Q9LYT3|TT12_ARATH (e_value=2e-34) Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1;; (*TAIR) AT3G21690.1 (e_value=3e-56) | Symbols: | MATE efflux family protein | chr3:7638750-7641861 FORWARD LENGTH=506;; (*ITAG) Solyc12g005850.1.1 (e_value=3e-74) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:481937-488981 transcript_region:SL2.40ch12:481937..488981- go_terms:GO:0016020 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *--- MDTK_ERWAM); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00050824g0001.1 protein ; (*GB) gi|359473525|ref|XP_003631315.1| (e_value=6e-22) PREDICTED: uncharacterized protein LOC100265010 [Vitis vinifera];; (*ITAG) Solyc03g006480.1.1 (e_value=3e-99) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:1060111-1071427 transcript_region:SL2.40ch03:1060111..1071427- go_terms:GO:0016787 functional_description:"Helicase sen1 (AHRD V1 *--- B6K1Y0_SCHJY); contains Interpro domain(s) IPR014016 Helicase, superfamily 1, UvrD-related "; GO:0016787 NbS00012383g0001.1 protein NbS00016917g0001.1 protein NbS00001922g0003.1 protein NbS00007742g0003.1 protein NbS00030098g0001.1 protein NbS00030098g0002.1 protein ; (*GB) gi|124359646|gb|ABD32321.2| (e_value=4e-14) Ribonuclease H [Medicago truncatula];; (*ITAG) Solyc05g039970.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00039442g0001.1 protein NbC24020227g0001.1 protein ; (*GB) gi|217072486|gb|ACJ84603.1| (e_value=8e-37) unknown [Medicago truncatula];; (*SWP) sp|Q9ZUH3|PUP5_ARATH (e_value=3e-34) Probable purine permease 5 OS=Arabidopsis thaliana GN=PUP5 PE=2 SV=2;; (*TAIR) AT2G24220.2 (e_value=2e-35) | Symbols: PUP5 | purine permease 5 | chr2:10300603-10301688 FORWARD LENGTH=361;; (*ITAG) Solyc07g005660.2.1 (e_value=4e-45) genomic_reference:SL2.40ch07 gene_region:536448-539294 transcript_region:SL2.40ch07:536448..539294+ go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00008841g0001.1 protein NbS00001722g0002.1 protein NbS00015896g0001.1 protein NbC24372469g0001.1 protein ; (*GB) gi|359496777|ref|XP_002265108.2| (e_value=3e-63) PREDICTED: uncharacterized protein LOC100252003 [Vitis vinifera];; (*TAIR) AT2G22660.2 (e_value=2e-59) | Symbols: | Protein of unknown function (duplicated DUF1399) | chr2:9627737-9630840 FORWARD LENGTH=819;; (*ITAG) Solyc02g063450.2.1 (e_value=2e-73) genomic_reference:SL2.40ch02 gene_region:30120817-30126388 transcript_region:SL2.40ch02:30120817..30126388- functional_description:"Hypothetical YFW family protein 5 (AHRD V1 *--- Q5AP84_CANAL); contains Interpro domain(s) IPR009836 Protein of unknown function DUF1399 "; NbS00009224g0004.1 protein NbS00012004g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=3e-13) hypothetical protein [Cucumis melo subsp. melo]; NbS00006416g0004.1 protein NbS00022615g0005.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-31) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00045431g0002.1 protein NbS00000397g0001.1 protein ; (*GB) gi|225432012|ref|XP_002279647.1| (e_value=5e-30) PREDICTED: galactokinase [Vitis vinifera];; (*SWP) sp|Q9SEE5|GALK1_ARATH (e_value=5e-20) Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2;; (*TAIR) AT3G06580.1 (e_value=4e-21) | Symbols: GAL1, GALK | Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496;; (*ITAG) Solyc01g058390.2.1 (e_value=8e-32) genomic_reference:SL2.40ch01 gene_region:59252697-59258614 transcript_region:SL2.40ch01:59252697..59258614- go_terms:GO:0004335 functional_description:"Galactokinase (AHRD V1 **** B6V3B9_CUCME); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0004335 NbS00040499g0004.1 protein NbS00020895g0001.1 protein NbS00030057g0001.1 protein NbS00024434g0002.1 protein ; (*GB) gi|147867330|emb|CAN81188.1| (e_value=5e-12) hypothetical protein VITISV_029907 [Vitis vinifera];; (*SWP) sp|Q5VQ09|ARK2_ORYSJ (e_value=1e-14) Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1;; (*TAIR) AT1G01950.1 (e_value=4e-14) | Symbols: ARK2 | armadillo repeat kinesin 2 | chr1:325473-330403 FORWARD LENGTH=894;; (*ITAG) Solyc01g091480.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbC24371234g0001.1 protein ; (*GB) gi|193290660|gb|ACF17638.1| (e_value=5e-57) putative ketol-acid reductoisomerase [Capsicum annuum];; (*SWP) sp|Q05758|ILV5_ARATH (e_value=8e-53) Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2;; (*TAIR) AT3G58610.3 (e_value=6e-54) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc12g010840.1.1 (e_value=1e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3773065-3778565 transcript_region:SL2.40ch12:3773065..3778565+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D7LW57_ARALY); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00020242g0001.1 protein NbC24391577g0001.1 protein ; (*GB) gi|356501310|ref|XP_003519468.1| (e_value=3e-78) PREDICTED: lysosomal beta glucosidase-like [Glycine max];; (*SWP) sp|Q56078|BGLX_SALTY (e_value=1e-15) Periplasmic beta-glucosidase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=bglX PE=3 SV=2;; (*TAIR) AT5G04885.1 (e_value=1e-63) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc04g015560.2.1 (e_value=5e-93) genomic_reference:SL2.40ch04 gene_region:5817557-5825924 transcript_region:SL2.40ch04:5817557..5825924+ go_terms:GO:0005515 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005515 NbS00003336g0001.1 protein NbS00009216g0001.1 protein ; (*GB) gi|255578433|ref|XP_002530081.1| (e_value=1e-25) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LZA6|SDP1_ARATH (e_value=1e-25) Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1;; (*TAIR) AT3G57140.2 (e_value=2e-27) | Symbols: SDP1-LIKE | sugar-dependent 1-like | chr3:21150742-21153315 REVERSE LENGTH=801;; (*ITAG) Solyc10g079410.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60273615-60276422 transcript_region:SL2.40ch10:60273615..60276422+ go_terms:GO:0006629,GO:0008152,GO:0005525 functional_description:"Patatin-like phospholipase domain-containing protein c (AHRD V1 *--- B6K1H8_SCHJY); contains Interpro domain(s) IPR006689 ARF/SAR superfamily "; GO:0006629,GO:0008152,GO:0005525 NbS00000524g0003.1 protein NbS00058347g0001.1 protein NbS00043079g0001.1 protein NbC23496037g0001.1 protein ; (*GB) gi|254029103|gb|ACT53396.1| (e_value=5e-46) phenylalanine ammonia-lyase [Ageratina adenophora];; (*SWP) sp|Q40910|PAL4_POPKI (e_value=3e-44) Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1;; (*TAIR) AT3G10340.1 (e_value=4e-44) | Symbols: PAL4 | phenylalanine ammonia-lyase 4 | chr3:3204260-3207809 FORWARD LENGTH=707;; (*ITAG) Solyc00g282510.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:20863680-20865858 transcript_region:SL2.40ch00:20863680..20865858+ go_terms:GO:0009058,GO:0005737,GO:0003824 functional_description:"Phenylalanine ammonia-lyase (AHRD V1 ***- B5LAW0_CAPAN); contains Interpro domain(s) IPR005922 Phenylalanine ammonia-lyase "; GO:0009058,GO:0005737,GO:0003824 NbS00039213g0002.1 protein NbS00014782g0002.1 protein NbS00010499g0002.1 protein ; (*ITAG) Solyc01g104270.2.1 (e_value=8e-26) genomic_reference:SL2.40ch01 gene_region:84460019-84465624 transcript_region:SL2.40ch01:84460019..84465624+ go_terms:GO:0005524 functional_description:"Os12g0283800 protein (Fragment) (AHRD V1 *-*- Q0INW6_ORYSJ)"; GO:0005524 NbC23661000g0001.1 protein ; (*TAIR) AT5G36670.1 (e_value=2e-15) | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr5:14401491-14406427 FORWARD LENGTH=1193;; (*ITAG) Solyc09g065340.2.1 (e_value=4e-28) genomic_reference:SL2.40ch09 gene_region:59010695-59021345 transcript_region:SL2.40ch09:59010695..59021345+ go_terms:GO:0006508,GO:0008270 functional_description:"PHD finger family protein (AHRD V1 *--- D7MI23_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0006508,GO:0008270 NbS00010076g0001.1 protein ; (*GB) gi|356552406|ref|XP_003544559.1| (e_value=2e-63) PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max];; (*SWP) sp|P14868|SYDC_HUMAN (e_value=1e-33) Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2;; (*TAIR) AT4G31180.2 (e_value=2e-62) | Symbols: | Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558;; (*ITAG) Solyc05g056250.2.1 (e_value=1e-67) genomic_reference:SL2.40ch05 gene_region:64748883-64755406 transcript_region:SL2.40ch05:64748883..64755406- go_terms:GO:0004815,GO:0042802 functional_description:"Asparaginyl-tRNA synthetase (AHRD V1 **** SYN_PYRHO); contains Interpro domain(s) IPR004523 Aspartyl-tRNA synthetase, class IIb, archea/euk type "; GO:0004815,GO:0042802 NbS00010076g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-42) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006684g0001.1 protein NbS00015984g0001.1 protein NbS00015984g0002.1 protein NbC23375122g0001.1 protein ; (*GB) gi|295829462|gb|ADG38400.1| (e_value=8e-41) AT3G08530-like protein [Capsella grandiflora];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=1e-39) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=1e-40) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc06g051310.2.1 (e_value=7e-43) genomic_reference:SL2.40ch06 gene_region:31032238-31043527 transcript_region:SL2.40ch06:31032238..31043527+ go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00034154g0001.1 protein NbS00004649g0101.1 protein NbS00004649g0105.1 protein NbS00031768g0002.1 protein NbC23300057g0001.1 protein ; (*GB) gi|255583818|ref|XP_002532661.1| (e_value=1e-19) serine-threonine protein kinase, putative [Ricinus communis];; (*TAIR) AT5G41730.1 (e_value=2e-16) | Symbols: | Protein kinase family protein | chr5:16684914-16687145 REVERSE LENGTH=711;; (*ITAG) Solyc01g095550.2.1 (e_value=8e-34) genomic_reference:SL2.40ch01 gene_region:78531568-78534497 transcript_region:SL2.40ch01:78531568..78534497+ go_terms:GO:0004712 functional_description:"Receptor-interacting serine/threonine-protein kinase 1 (AHRD V1 *--* RIPK1_HUMAN); contains Interpro domain(s) IPR010632 Protein of unknown function DUF1221 "; GO:0004712 NbS00002749g0001.1 protein NbS00002749g0004.1 protein ; (*GB) gi|356511516|ref|XP_003524471.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100785644 [Glycine max];; (*TAIR) AT3G48710.1 (e_value=2e-13) | Symbols: | DEK domain-containing chromatin associated protein | chr3:18041024-18043995 FORWARD LENGTH=462;; (*ITAG) Solyc06g072660.2.1 (e_value=2e-25) genomic_reference:SL2.40ch06 gene_region:41196763-41202118 transcript_region:SL2.40ch06:41196763..41202118- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00002749g0104.1 protein NbS00002749g0106.1 protein NbS00052168g0003.1 protein ; (*GB) gi|3894391|gb|AAC78595.1| (e_value=3e-43) Hcr2-5B [Solanum lycopersicum var. cerasiforme];; (*SWP) sp|Q9LP24|Y1571_ARATH (e_value=7e-30) Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1;; (*TAIR) AT1G35710.1 (e_value=5e-31) | Symbols: | Protein kinase family protein with leucine-rich repeat domain | chr1:13220940-13224386 FORWARD LENGTH=1120;; (*ITAG) Solyc12g099980.1.1 (e_value=4e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65246036-65248971 transcript_region:SL2.40ch12:65246036..65248971- go_terms:GO:0005515 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0005515 NbS00003190g0001.1 protein NbC24400462g0001.1 protein ; (*GB) gi|255558584|ref|XP_002520317.1| (e_value=4e-72) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9FVX2|PP129_ARATH (e_value=9e-65) Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2;; (*TAIR) AT1G77360.1 (e_value=7e-66) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=517;; (*ITAG) Solyc11g070040.1.1 (e_value=2e-88) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51683590-51685026 transcript_region:SL2.40ch11:51683590..51685026+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KUI4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00011921g0002.1 protein NbS00028991g0001.1 protein NbS00020330g0003.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=2e-14) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00020330g0005.1 protein NbS00017767g0001.1 protein NbS00015289g0004.1 protein NbS00012504g0002.1 protein NbS00000779g0002.1 protein NbC23419769g0001.1 protein ; (*GB) gi|357460695|ref|XP_003600629.1| (e_value=6e-32) FACT complex subunit SPT16 [Medicago truncatula];; (*SWP) sp|Q7X923|SPT16_ORYSJ (e_value=5e-31) FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2;; (*TAIR) AT4G10710.1 (e_value=2e-31) | Symbols: SPT16 | global transcription factor C | chr4:6602226-6605450 REVERSE LENGTH=1074;; (*ITAG) Solyc01g101020.2.1 (e_value=8e-37) genomic_reference:SL2.40ch01 gene_region:82648492-82651919 transcript_region:SL2.40ch01:82648492..82651919+ go_terms:GO:0042393 functional_description:"FACT complex subunit SPT16 (AHRD V1 ***- D3AWW1_POLPA); contains Interpro domain(s) IPR013953 FACT complex subunit Spt16p/Cdc68p "; GO:0042393 NbS00008200g0002.1 protein NbS00049214g0002.1 protein NbS00046432g0001.1 protein ; (*GB) gi|224126327|ref|XP_002319811.1| (e_value=6e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54750.1 (e_value=2e-19) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc10g006490.2.1 (e_value=2e-23) genomic_reference:SL2.40ch10 gene_region:1075550-1079615 transcript_region:SL2.40ch10:1075550..1079615+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6T6G9_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00031590g0001.1 protein ; (*GB) gi|585451|sp|P37221.1|MAOM_SOLTU (e_value=5e-69) RecName: Full=NAD-dependent malic enzyme 62 kDa isoform, mitochondrial; Short=NAD-ME; Flags: Precursor;; (*SWP) sp|P37221|MAOM_SOLTU (e_value=2e-70) NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1;; (*TAIR) AT2G13560.1 (e_value=1e-59) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623;; (*ITAG) Solyc08g013860.2.1 (e_value=2e-72) genomic_reference:SL2.40ch08 gene_region:3198664-3222236 transcript_region:SL2.40ch08:3198664..3222236- go_terms:GO:0005524,GO:0008270,GO:0050897 functional_description:"NAD-dependent malic enzyme 2 (AHRD V1 ***- C2WKU6_BACCE); contains Interpro domain(s) IPR012302 Malic enzyme, NAD-binding "; GO:0005524,GO:0008270,GO:0050897 NbS00019952g0002.1 protein NbS00021267g0001.1 protein NbC23868163g0001.1 protein ; (*GB) gi|224118912|ref|XP_002317936.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT1G49040.3 (e_value=3e-30) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18140457-18148826 REVERSE LENGTH=1040;; (*ITAG) Solyc03g119650.2.1 (e_value=2e-32) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00048346g0002.1 protein ; (*GB) gi|255585305|ref|XP_002533351.1| (e_value=2e-70) conserved hypothetical protein [Ricinus communis]; NbS00017886g0001.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=1e-16) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbC25653945g0001.1 protein ; (*GB) gi|255553255|ref|XP_002517670.1| (e_value=3e-95) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=1e-37) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=9e-39) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc06g068200.1.1 (e_value=3e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38641511-38643830 transcript_region:SL2.40ch06:38641511..38643830- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbC24182374g0001.1 protein ; (*GB) gi|356540247|ref|XP_003538601.1| (e_value=5e-24) PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [Glycine max];; (*TAIR) AT5G14480.1 (e_value=1e-26) | Symbols: | beta-1,4-N-acetylglucosaminyltransferase family protein | chr5:4667984-4669693 FORWARD LENGTH=387;; (*ITAG) Solyc12g035470.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:25089211-25090913 transcript_region:SL2.40ch12:25089211..25090913+ go_terms:GO:0016020 functional_description:"Glycosyl transferase family 17 protein (AHRD V1 ***- D7M6J9_ARALY); contains Interpro domain(s) IPR006813 Glycosyl transferase, family 17 "; GO:0016020 NbS00004710g0001.1 protein NbS00007168g0001.1 protein ; (*GB) gi|45935136|gb|AAS79594.1| (e_value=1e-93) putative DNA repair protein [Ipomoea trifida];; (*SWP) sp|Q9FNI6|SM3L2_ARATH (e_value=5e-94) Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1;; (*TAIR) AT5G22750.1 (e_value=3e-95) | Symbols: RAD5 | DNA/RNA helicase protein | chr5:7565374-7570871 REVERSE LENGTH=1029;; (*ITAG) Solyc11g066790.1.1 (e_value=2e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49669875-49679136 transcript_region:SL2.40ch11:49669875..49679136+ go_terms:GO:0016818,GO:0005524,GO:0008270 functional_description:"DNA helicase (AHRD V1 **-- C4R4A1_PICPG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0016818,GO:0005524,GO:0008270 NbS00006374g0001.1 protein NbS00014878g0001.1 protein ; (*ITAG) Solyc09g005140.1.1 (e_value=3e-21) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:130530-142052 transcript_region:SL2.40ch09:130530..142052- functional_description:"Unknown Protein (AHRD V1)"; NbS00032097g0001.1 protein NbS00022468g0002.1 protein ; (*ITAG) Solyc09g020160.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:18827013-18830900 transcript_region:SL2.40ch09:18827013..18830900+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00036369g0001.1 protein NbS00003863g0004.1 protein NbS00010007g0002.1 protein ; (*ITAG) Solyc03g005850.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:574447-576938 transcript_region:SL2.40ch03:574447..576938- functional_description:"Unknown Protein (AHRD V1)"; NbS00019101g0003.1 protein NbS00029384g0002.1 protein ; (*GB) gi|71726950|gb|AAZ39646.1| (e_value=5e-53) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|Q50EK3|C04C1_PINTA (e_value=9e-28) Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1;; (*TAIR) AT2G45510.1 (e_value=4e-33) | Symbols: CYP704A2 | cytochrome P450, family 704, subfamily A, polypeptide 2 | chr2:18753085-18754944 FORWARD LENGTH=511;; (*ITAG) Solyc01g094100.2.1 (e_value=3e-54) genomic_reference:SL2.40ch01 gene_region:77440904-77443601 transcript_region:SL2.40ch01:77440904..77443601- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00044852g0001.1 protein NbS00027047g0003.1 protein NbS00027047g0005.1 protein ; (*GB) gi|147835239|emb|CAN67792.1| (e_value=3e-21) hypothetical protein VITISV_001313 [Vitis vinifera]; NbS00006585g0001.1 protein NbS00047940g0001.1 protein NbS00047940g0002.1 protein ; (*ITAG) Solyc12g043140.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44266393-44269129 transcript_region:SL2.40ch12:44266393..44269129- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00043006g0001.1 protein ; (*GB) gi|359496934|ref|XP_002263959.2| (e_value=1e-54) PREDICTED: UPF0308 protein At2g37240, chloroplastic [Vitis vinifera];; (*TAIR) AT5G65840.1 (e_value=5e-49) | Symbols: | Thioredoxin superfamily protein | chr5:26344097-26346057 REVERSE LENGTH=275;; (*ITAG) Solyc02g064550.2.1 (e_value=2e-58) genomic_reference:SL2.40ch02 gene_region:30245428-30252431 transcript_region:SL2.40ch02:30245428..30252431- functional_description:"C1orf93 homolog (AHRD V1 **-- C1C416_RANCA); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00055449g0001.1 protein NbS00050242g0001.1 protein NbS00006577g0003.1 protein NbS00044479g0003.1 protein NbS00000439g0102.1 protein NbS00000161g0001.1 protein NbS00006511g0001.1 protein NbS00013901g0001.1 protein NbS00013901g0005.1 protein NbS00001159g0001.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-25) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00016887g0001.1 protein NbS00012469g0001.1 protein NbS00012762g0001.1 protein ; (*GB) gi|23503034|gb|AAK49452.2|AF304372_1 (e_value=4e-64) putative beta-1,3-glucan synthase [Nicotiana alata];; (*SWP) sp|Q3B724|CALS5_ARATH (e_value=1e-51) Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1;; (*TAIR) AT2G13680.1 (e_value=8e-53) | Symbols: CALS5, GLS2, ATGSL02 | callose synthase 5 | chr2:5695124-5706134 FORWARD LENGTH=1923;; (*ITAG) Solyc11g005980.1.1 (e_value=5e-64) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:776828-790557 transcript_region:SL2.40ch11:776828..790557+ go_terms:GO:0016020 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8QQF0_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016020 NbS00012762g0002.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=3e-34) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|Q1RJT3|ODP2_RICBR (e_value=8e-13) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1;; (*TAIR) AT1G34430.1 (e_value=4e-30) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00023914g0002.1 protein NbS00029135g0003.1 protein ; (*GB) gi|357134390|ref|XP_003568800.1| (e_value=5e-44) PREDICTED: bifunctional protein tilS/hprT-like [Brachypodium distachyon];; (*SWP) sp|Q839B2|HPRT_ENTFA (e_value=9e-23) Hypoxanthine-guanine phosphoribosyltransferase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=hpt PE=3 SV=1;; (*TAIR) AT1G71750.1 (e_value=4e-43) | Symbols: HGPT | Hypoxanthine-guanine phosphoribosyltransferase | chr1:26987954-26989144 REVERSE LENGTH=188;; (*ITAG) Solyc00g009060.2.1 (e_value=4e-50) genomic_reference:SL2.40ch00 gene_region:8772359-8774693 transcript_region:SL2.40ch00:8772359..8774693+ go_terms:GO:0005737,GO:0009116 functional_description:"Hypoxanthine phosphoribosyltransferase (AHRD V1 ***- B4UWA8_ARAHY); contains Interpro domain(s) IPR005904 Hypoxanthine phosphoribosyl transferase "; GO:0005737,GO:0009116 NbS00017224g0009.1 protein ; (*GB) gi|255546081|ref|XP_002514100.1| (e_value=7e-31) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q8S8S7|PUB34_ARATH (e_value=1e-29) U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1;; (*TAIR) AT5G57035.1 (e_value=4e-31) | Symbols: | U-box domain-containing protein kinase family protein | chr5:23080743-23083819 FORWARD LENGTH=789;; (*ITAG) Solyc12g008990.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2291562-2296507 transcript_region:SL2.40ch12:2291562..2296507+ go_terms:GO:0005515 functional_description:"Receptor-like protein kinase (AHRD V1 *-*- Q9FZP2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00005014g0001.1 protein ; (*GB) gi|224132896|ref|XP_002321436.1| (e_value=5e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=1e-62) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=1e-63) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=2e-72) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00012081g0101.1 protein NbC23847028g0001.1 protein ; (*GB) gi|155242200|gb|ABT18100.1| (e_value=1e-35) FERONIA receptor-like kinase [Arabidopsis thaliana];; (*SWP) sp|Q9SCZ4|FERON_ARATH (e_value=4e-37) Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1;; (*TAIR) AT3G51550.1 (e_value=3e-38) | Symbols: FER | Malectin/receptor-like protein kinase family protein | chr3:19117877-19120564 REVERSE LENGTH=895;; (*ITAG) Solyc09g015830.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:11274733-11276682 transcript_region:SL2.40ch09:11274733..11276682- go_terms:GO:0004672 functional_description:"Pto-like, Serine/threonine kinase protein, resistance protein"; GO:0004672 NbS00013866g0001.1 protein ; (*GB) gi|356574022|ref|XP_003555152.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100810572 [Glycine max];; (*TAIR) AT3G27325.2 (e_value=7e-35) | Symbols: | hydrolases, acting on ester bonds | chr3:10095956-10102087 FORWARD LENGTH=1121;; (*ITAG) Solyc02g093770.2.1 (e_value=4e-44) genomic_reference:SL2.40ch02 gene_region:49064946-49077850 transcript_region:SL2.40ch02:49064946..49077850- go_terms:GO:0031227 functional_description:"GPI inositol-deacylase (AHRD V1 *-*- C5FP83_NANOT); contains Interpro domain(s) IPR012908 PGAP1-like "; GO:0031227 NbS00029775g0001.1 protein NbS00012282g0002.1 protein NbS00039175g0004.1 protein NbS00027123g0001.1 protein NbS00011736g0003.1 protein NbS00003984g0002.1 protein NbS00001198g0001.1 protein NbS00014209g0002.1 protein ; (*GB) gi|71370259|gb|AAZ30377.1| (e_value=6e-21) PHB2 [Nicotiana benthamiana];; (*TAIR) AT4G28510.1 (e_value=2e-18) | Symbols: ATPHB1, PHB1 | prohibitin 1 | chr4:14084970-14086372 REVERSE LENGTH=288;; (*ITAG) Solyc10g008140.2.1 (e_value=3e-22) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00010732g0001.1 protein ; (*GB) gi|225429678|ref|XP_002281444.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100249293 [Vitis vinifera];; (*TAIR) AT2G26340.1 (e_value=1e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:11215254-11216480 FORWARD LENGTH=253;; (*ITAG) Solyc08g061810.2.1 (e_value=3e-42) genomic_reference:SL2.40ch08 gene_region:46759415-46761882 transcript_region:SL2.40ch08:46759415..46761882+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003942g0002.1 protein NbS00002865g0001.1 protein NbS00014497g0002.1 protein NbS00000921g0001.1 protein NbS00050570g0001.1 protein NbS00010263g0002.1 protein NbS00025502g0001.1 protein ; (*GB) gi|150036255|gb|ABR67418.1| (e_value=9e-20) mitochondrial FAD carrier [Cucumis melo subsp. melo];; (*TAIR) AT3G05290.1 (e_value=1e-19) | Symbols: PNC1 | peroxisomal adenine nucleotide carrier 1 | chr3:1506129-1507614 REVERSE LENGTH=322;; (*ITAG) Solyc01g098910.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:81036549-81040755 transcript_region:SL2.40ch01:81036549..81040755- go_terms:GO:0015217,GO:0005347 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P0Z3_COCP7); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015217,GO:0005347 NbS00001817g0006.1 protein NbC23521239g0001.1 protein ; (*GB) gi|357485335|ref|XP_003612955.1| (e_value=3e-33) Serine hydroxymethyltransferase [Medicago truncatula];; (*SWP) sp|P49357|GLYM_FLAPR (e_value=1e-33) Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1;; (*TAIR) AT4G37930.1 (e_value=4e-34) | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517;; (*ITAG) Solyc02g091560.2.1 (e_value=3e-34) genomic_reference:SL2.40ch02 gene_region:47400296-47406791 transcript_region:SL2.40ch02:47400296..47406791+ go_terms:GO:0004372 functional_description:"Serine hydroxymethyltransferase (AHRD V1 **** C6ZJZ0_SOYBN); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0004372 NbS00005167g0104.1 protein NbS00009229g0002.1 protein NbS00057166g0002.1 protein NbS00057166g0003.1 protein NbC24544806g0001.1 protein ; (*GB) gi|255583593|ref|XP_002532552.1| (e_value=3e-67) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G50660.1 (e_value=4e-61) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc12g005010.1.1 (e_value=1e-81) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:4827-8098 transcript_region:SL2.40ch12:4827..8098+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00024971g0001.1 protein NbS00044266g0001.1 protein NbS00003039g0003.1 protein NbS00003039g0004.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=6e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00027043g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-13) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00027043g0004.1 protein NbS00011706g0006.1 protein NbS00016100g0002.1 protein ; (*GB) gi|359486639|ref|XP_002284011.2| (e_value=3e-93) PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Vitis vinifera];; (*SWP) sp|O80647|PP195_ARATH (e_value=1e-61) Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1;; (*TAIR) AT2G39620.1 (e_value=9e-63) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836;; (*ITAG) Solyc04g016540.1.1 (e_value=2e-138) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00029519g0001.1 protein NbC24042712g0001.1 protein ; (*GB) gi|7076784|emb|CAB75899.1| (e_value=9e-64) 2-oxoglutarate dehydrogenase, E1 subunit-like protein [Arabidopsis thaliana];; (*SWP) sp|O74378|ODO1_SCHPO (e_value=4e-48) 2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kgd1 PE=2 SV=1;; (*TAIR) AT3G55410.1 (e_value=2e-66) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=6e-67) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00016665g0001.1 protein NbC23153463g0001.1 protein ; (*GB) gi|255570599|ref|XP_002526256.1| (e_value=6e-34) importin beta-1, putative [Ricinus communis];; (*TAIR) AT5G53480.1 (e_value=5e-33) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00043979g0001.1 protein ; (*ITAG) Solyc11g017250.1.1 (e_value=2e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00059172g0001.1 protein ; (*GB) gi|365884119|ref|ZP_09423193.1| (e_value=3e-11) hypothetical protein BRAO375_4650016 [Bradyrhizobium sp. ORS 375]; NbS00024990g0001.1 protein NbS00024990g0003.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=1e-13) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00024990g0004.1 protein NbS00024990g0005.1 protein NbS00008042g0002.1 protein NbS00043825g0001.1 protein NbS00001534g0001.1 protein NbC25898041g0001.1 protein ; (*GB) gi|356565073|ref|XP_003550769.1| (e_value=4e-21) PREDICTED: galactokinase-like [Glycine max];; (*SWP) sp|Q9SEE5|GALK1_ARATH (e_value=3e-15) Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2;; (*TAIR) AT3G06580.1 (e_value=2e-16) | Symbols: GAL1, GALK | Mevalonate/galactokinase family protein | chr3:2049141-2051867 REVERSE LENGTH=496;; (*ITAG) Solyc01g058390.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:59252697-59258614 transcript_region:SL2.40ch01:59252697..59258614- go_terms:GO:0004335 functional_description:"Galactokinase (AHRD V1 **** B6V3B9_CUCME); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0004335 NbS00025586g0002.1 protein ; (*GB) gi|147769592|emb|CAN65705.1| (e_value=1e-22) hypothetical protein VITISV_001744 [Vitis vinifera];; (*TAIR) AT5G58130.1 (e_value=8e-14) | Symbols: ROS3 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:23521190-23523766 REVERSE LENGTH=748;; (*ITAG) Solyc07g042700.2.1 (e_value=3e-73) genomic_reference:SL2.40ch07 gene_region:53557522-53561470 transcript_region:SL2.40ch07:53557522..53561470- go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding region RNP-1 (RNA recognition motif) Pyridoxal-dependent decarboxylase (AHRD V1 **-- A2Q361_MEDTR); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00025586g0003.1 protein ; (*GB) gi|359481971|ref|XP_003632699.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FMQ1|PP376_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2 SV=1;; (*TAIR) AT5G12100.1 (e_value=0.0) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:3911388-3913838 FORWARD LENGTH=816;; (*ITAG) Solyc12g099840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65162719-65165091 transcript_region:SL2.40ch12:65162719..65165091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038255g0002.1 protein NbS00017956g0002.1 protein ; (*GB) gi|224084084|ref|XP_002307209.1| (e_value=2e-49) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S2T1|DDPS6_ARATH (e_value=3e-45) Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2;; (*TAIR) AT2G17570.1 (e_value=2e-46) | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr2:7645086-7645973 FORWARD LENGTH=295; NbS00027126g0001.1 protein NbS00011470g0001.1 protein ; (*GB) gi|388604525|gb|AFK76482.1| (e_value=4e-93) tRNA ligase [Solanum melongena];; (*TAIR) AT1G07910.2 (e_value=1e-65) | Symbols: ATRNL, RNL, AtRLG1 | RNAligase | chr1:2446712-2454386 FORWARD LENGTH=1104;; (*ITAG) Solyc11g072420.1.1 (e_value=4e-102) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52667898-52692241 transcript_region:SL2.40ch11:52667898..52692241- go_terms:GO:0004113,GO:0003972,GO:0051731 functional_description:"RNA ligase isoform 2 (Fragment) (AHRD V1 **-* Q0WZC1_WHEAT)"; GO:0004113,GO:0003972,GO:0051731 NbS00012394g0003.1 protein NbS00006801g0001.1 protein NbS00016945g0001.1 protein NbS00006929g0001.1 protein NbS00006929g0002.1 protein ; (*GB) gi|224092629|ref|XP_002309687.1| (e_value=5e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G10780.1 (e_value=1e-27) | Symbols: | CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3408422-3409759 FORWARD LENGTH=180;; (*ITAG) Solyc08g006650.2.1 (e_value=5e-38) genomic_reference:SL2.40ch08 gene_region:1236672-1242556 transcript_region:SL2.40ch08:1236672..1242556- functional_description:"Transmembrane protein 85 (AHRD V1 **-- B2W047_PYRTR); contains Interpro domain(s) IPR009445 Protein of unknown function DUF1077 "; NbS00041677g0002.1 protein NbS00028751g0101.1 protein NbS00028751g0104.1 protein NbS00028751g0105.1 protein NbC23903998g0001.1 protein ; (*GB) gi|255559909|ref|XP_002520973.1| (e_value=1e-11) histone acetyltransferase gcn5, putative [Ricinus communis];; (*ITAG) Solyc10g045400.1.1 (e_value=5e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00025813g0001.1 protein ; (*GB) gi|224081993|ref|XP_002306549.1| (e_value=5e-123) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8N5D0|WDTC1_HUMAN (e_value=2e-29) WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2;; (*TAIR) AT5G10940.2 (e_value=6e-98) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:3448890-3454127 REVERSE LENGTH=754;; (*ITAG) Solyc04g076020.2.1 (e_value=6e-149) genomic_reference:SL2.40ch04 gene_region:58542824-58562426 transcript_region:SL2.40ch04:58542824..58562426- go_terms:GO:0004857 functional_description:"Wd and tetratricopeptide repeat protein (AHRD V1 *--- C5FTG1_NANOT); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004857 NbS00013607g0005.1 protein NbS00013607g0006.1 protein NbS00048343g0001.1 protein NbS00004130g0001.1 protein NbS00057207g0002.1 protein NbS00010737g0001.1 protein ; (*GB) gi|356497738|ref|XP_003517716.1| (e_value=5e-41) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g51880-like [Glycine max];; (*ITAG) Solyc06g069610.1.1 (e_value=2e-55) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39741466-39744893 transcript_region:SL2.40ch06:39741466..39744893+ go_terms:GO:0019199,GO:0005057 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0005057 NbS00010610g0004.1 protein NbS00014993g0002.1 protein ; (*GB) gi|255587991|ref|XP_002534466.1| (e_value=2e-13) cation:cation antiporter, putative [Ricinus communis];; (*TAIR) AT1G54115.1 (e_value=1e-14) | Symbols: ATCCX4, CCX4 | cation calcium exchanger 4 | chr1:20202118-20204052 FORWARD LENGTH=644;; (*ITAG) Solyc02g069710.2.1 (e_value=1e-14) genomic_reference:SL2.40ch02 gene_region:34109771-34111828 transcript_region:SL2.40ch02:34109771..34111828- go_terms:GO:0005432 functional_description:"Sodium/calcium exchanger protein (AHRD V1 *-** B6K816_SCHJY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0005432 NbS00014993g0004.1 protein NbS00035763g0001.1 protein ; (*GB) gi|147785835|emb|CAN73071.1| (e_value=5e-32) hypothetical protein VITISV_032383 [Vitis vinifera]; NbC24461587g0001.1 protein ; (*ITAG) Solyc06g082340.1.1 (e_value=2e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:44478552-44479857 transcript_region:SL2.40ch06:44478552..44479857- functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00038309g0002.1 protein NbS00001709g0002.1 protein NbC24659670g0001.1 protein ; (*GB) gi|359476721|ref|XP_002268376.2| (e_value=1e-31) PREDICTED: probable protein phosphatase 2C 55-like [Vitis vinifera];; (*SWP) sp|Q9LVQ8|P2C80_ARATH (e_value=2e-31) Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1;; (*TAIR) AT5G66720.2 (e_value=1e-32) | Symbols: | Protein phosphatase 2C family protein | chr5:26639015-26640545 REVERSE LENGTH=411;; (*ITAG) Solyc07g064310.1.1 (e_value=3e-42) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63738696-63739817 transcript_region:SL2.40ch07:63738696..63739817- go_terms:GO:0004722 functional_description:"Phosphatase PTC7 homolog (AHRD V1 **** C1BT38_9MAXI); contains Interpro domain(s) IPR001932 Protein phosphatase 2C-related "; GO:0004722 NbS00030604g0002.1 protein NbS00026681g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-22) RNase H family protein [Solanum demissum];; (*ITAG) Solyc00g230060.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19613244-19614249 transcript_region:SL2.40ch00:19613244..19614249+ go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00011459g0001.1 protein NbS00006520g0002.1 protein NbS00017200g0002.1 protein NbS00000839g0002.1 protein ; (*GB) gi|255556930|ref|XP_002519498.1| (e_value=2e-18) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G09860.1 (e_value=2e-17) | Symbols: | unknown protein; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3026140-3027000 FORWARD LENGTH=98;; (*ITAG) Solyc09g008160.2.1 (e_value=2e-25) genomic_reference:SL2.40ch09 gene_region:1617337-1621480 transcript_region:SL2.40ch09:1617337..1621480+ functional_description:"Unknown Protein (AHRD V1)"; NbS00046168g0001.1 protein NbS00025117g0002.1 protein ; (*ITAG) Solyc09g010420.2.1 (e_value=2e-14) genomic_reference:SL2.40ch09 gene_region:3786597-3795092 transcript_region:SL2.40ch09:3786597..3795092- go_terms:GO:0004042,GO:0004358 functional_description:"Arginine biosynthesis bifunctional protein ArgJ (AHRD V1 ***- B4VHU0_9CYAN); contains Interpro domain(s) IPR002813 Arginine biosynthesis protein ArgJ "; GO:0004042,GO:0004358 NbS00025117g0003.1 protein ; (*GB) gi|147833057|emb|CAN70546.1| (e_value=6e-23) hypothetical protein VITISV_013807 [Vitis vinifera];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=8e-19) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT2G24050.1 (e_value=4e-15) | Symbols: eIFiso4G2 | MIF4G domain-containing protein / MA3 domain-containing protein | chr2:10225500-10228456 REVERSE LENGTH=747;; (*ITAG) Solyc12g009960.1.1 (e_value=2e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00025117g0006.1 protein NbS00040617g0001.1 protein NbS00039758g0001.1 protein ; (*GB) gi|115474297|ref|NP_001060747.1| (e_value=3e-25) Os07g0695800 [Oryza sativa Japonica Group];; (*SWP) sp|Q5XI78|ODO1_RAT (e_value=9e-20) 2-oxoglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ogdh PE=1 SV=1;; (*TAIR) AT3G55410.1 (e_value=2e-27) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=2e-28) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00016045g0002.1 protein NbS00005997g0002.1 protein NbS00006306g0001.1 protein NbS00058799g0001.1 protein ; (*GB) gi|225465512|ref|XP_002273014.1| (e_value=2e-37) PREDICTED: uncharacterized protein LOC100253325 [Vitis vinifera];; (*TAIR) AT1G15900.1 (e_value=1e-28) | Symbols: | unknown protein; Has 19 Blast hits to 19 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:5464356-5464697 FORWARD LENGTH=113; NbS00012585g0001.1 protein NbS00058671g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00058671g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013881g0003.1 protein NbS00047039g0002.1 protein NbS00017356g0002.1 protein ; (*GB) gi|225442807|ref|XP_002285279.1| (e_value=7e-112) PREDICTED: boron transporter 4 [Vitis vinifera];; (*SWP) sp|Q9SSG5|BOR5_ARATH (e_value=2e-105) Putative boron transporter 5 OS=Arabidopsis thaliana GN=BOR5 PE=3 SV=1;; (*TAIR) AT1G74810.1 (e_value=1e-106) | Symbols: BOR5 | HCO3- transporter family | chr1:28108474-28111534 FORWARD LENGTH=683;; (*ITAG) Solyc03g120020.2.1 (e_value=1e-124) genomic_reference:SL2.40ch03 gene_region:62586853-62591867 transcript_region:SL2.40ch03:62586853..62591867+ go_terms:GO:0005452 functional_description:"AE family transporter anion exchange (AHRD V1 *--* A4RY02_OSTLU); contains Interpro domain(s) IPR003020 Bicarbonate transporter, eukaryotic "; GO:0005452 NbS00010587g0002.1 protein NbS00010587g0004.1 protein NbS00002123g0001.1 protein NbS00019091g0002.1 protein ; (*ITAG) Solyc06g054030.2.1 (e_value=4e-21) genomic_reference:SL2.40ch06 gene_region:33389461-33390372 transcript_region:SL2.40ch06:33389461..33390372- functional_description:"Non-specific lipid-transfer protein (AHRD V1 *-*- B9GSL1_POPTR); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; NbS00003599g0101.1 protein NbS00025959g0106.1 protein NbS00017915g0001.1 protein ; (*GB) gi|224097758|ref|XP_002311069.1| (e_value=2e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT3G54880.1 (e_value=3e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:20337078-20337786 REVERSE LENGTH=112;; (*ITAG) Solyc11g008270.1.1 (e_value=3e-50) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:2495548-2498063 transcript_region:SL2.40ch11:2495548..2498063+ functional_description:"Genomic DNA chromosome 3 P1 clone MSJ11 (AHRD V1 **-- Q9LW02_ARATH)"; NbS00017915g0102.1 protein NbS00008150g0002.1 protein NbS00008150g0003.1 protein NbS00004324g0006.1 protein NbS00044224g0001.1 protein ; (*GB) gi|225441660|ref|XP_002277043.1| (e_value=5e-19) PREDICTED: tyrosine-specific transport protein-like [Vitis vinifera];; (*TAIR) AT2G33260.1 (e_value=2e-18) | Symbols: | Tryptophan/tyrosine permease | chr2:14100840-14102252 REVERSE LENGTH=436;; (*ITAG) Solyc10g078470.1.1 (e_value=2e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59610679-59612360 transcript_region:SL2.40ch10:59610679..59612360- go_terms:GO:0005302 functional_description:"Tyrosine-specific transport protein (AHRD V1 *-** D7DFI8_CHLTL); contains Interpro domain(s) IPR018227 Tryptophan/tyrosine permease "; GO:0005302 NbS00044224g0003.1 protein NbS00003061g0001.1 protein NbC24116892g0001.1 protein ; (*GB) gi|224112054|ref|XP_002316069.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SQV1|RH40_ARATH (e_value=1e-15) DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1;; (*TAIR) AT3G06480.1 (e_value=8e-17) | Symbols: | DEAD box RNA helicase family protein | chr3:1985697-1989666 REVERSE LENGTH=1088;; (*ITAG) Solyc01g057760.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:56514460-56523028 transcript_region:SL2.40ch01:56514460..56523028+ go_terms:GO:0008026,GO:0005515,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B3LNW9_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005515,GO:0005524 NbS00011699g0007.1 protein ; (*GB) gi|225435153|ref|XP_002284657.1| (e_value=4e-32) PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis vinifera];; (*SWP) sp|O14802|RPC1_HUMAN (e_value=5e-24) DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2;; (*TAIR) AT5G60040.2 (e_value=2e-24) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00008884g0102.1 protein NbS00012545g0002.1 protein NbS00047761g0001.1 protein NbS00056292g0001.1 protein NbS00015161g0003.1 protein NbS00019714g0002.1 protein NbS00007450g0001.1 protein NbS00022426g0001.1 protein NbS00054883g0001.1 protein NbC23903334g0001.1 protein ; (*GB) gi|218196923|gb|EEC79350.1| (e_value=9e-35) hypothetical protein OsI_20217 [Oryza sativa Indica Group];; (*SWP) sp|Q0DHL4|FTSH8_ORYSJ (e_value=3e-36) ATP-dependent zinc metalloprotease FTSH 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1;; (*TAIR) AT2G29080.1 (e_value=6e-31) | Symbols: ftsh3 | FTSH protease 3 | chr2:12489911-12492999 REVERSE LENGTH=809;; (*ITAG) Solyc09g010950.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:4306434-4314668 transcript_region:SL2.40ch09:4306434..4314668- go_terms:GO:0051082,GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_BACSU); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0051082,GO:0004176 NbS00035429g0001.1 protein NbS00001649g0008.1 protein ; (*GB) gi|124359510|gb|ABD28627.2| (e_value=4e-13) RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula]; NbS00058224g0001.1 protein ; (*GB) gi|225442373|ref|XP_002281479.1| (e_value=6e-35) PREDICTED: uncharacterized protein LOC100263418 [Vitis vinifera];; (*TAIR) AT2G25910.2 (e_value=9e-33) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=342;; (*ITAG) Solyc01g060200.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:62599290-62605178 transcript_region:SL2.40ch01:62599290..62605178- go_terms:GO:0003676,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 ***- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0005622 NbS00000558g0005.1 protein ; (*TAIR) AT1G74350.1 (e_value=6e-15) | Symbols: | Intron maturase, type II family protein | chr1:27949022-27951283 REVERSE LENGTH=753; NbS00005173g0002.1 protein NbS00004536g0005.1 protein NbS00004408g0002.1 protein NbS00011316g0102.1 protein NbS00011316g0105.1 protein NbC24318537g0001.1 protein NbS00050864g0001.1 protein ; (*GB) gi|255540397|ref|XP_002511263.1| (e_value=6e-74) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=7e-72) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=6e-73) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111560.2.1 (e_value=5e-97) genomic_reference:SL2.40ch03 gene_region:56209301-56240154 transcript_region:SL2.40ch03:56209301..56240154+ functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00005327g0002.1 protein NbS00031500g0001.1 protein ; (*GB) gi|225459854|ref|XP_002285929.1| (e_value=8e-20) PREDICTED: uncharacterized protein LOC100267694 [Vitis vinifera];; (*TAIR) AT5G42290.1 (e_value=3e-18) | Symbols: | transcription activator-related | chr5:16911700-16912032 FORWARD LENGTH=110; NbS00031500g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-72) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00017397g0001.1 protein NbS00004592g0001.1 protein ; (*ITAG) Solyc04g072540.2.1 (e_value=3e-22) genomic_reference:SL2.40ch04 gene_region:57120511-57124452 transcript_region:SL2.40ch04:57120511..57124452+ functional_description:"Mitochondrial transcription termination factor-like (AHRD V1 ***- Q67UH6_ORYSJ); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00004592g0002.1 protein ; (*GB) gi|167375832|gb|ABZ79403.1| (e_value=4e-52) PsbB [Persicaria virginiana];; (*SWP) sp|A4QLM0|PSBB_LOBMA (e_value=2e-52) Photosystem II CP47 chlorophyll apoprotein OS=Lobularia maritima GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=1e-53) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=1e-53) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00005961g0001.1 protein NbC24052114g0001.1 protein ; (*GB) gi|224116772|ref|XP_002317388.1| (e_value=7e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|O49404|BEH3_ARATH (e_value=1e-31) BES1/BZR1 homolog protein 3 OS=Arabidopsis thaliana GN=BEH3 PE=1 SV=1;; (*TAIR) AT4G18890.1 (e_value=1e-32) | Symbols: BEH3 | BES1/BZR1 homolog 3 | chr4:10352774-10355259 FORWARD LENGTH=284;; (*ITAG) Solyc02g071990.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:35891251-35896029 transcript_region:SL2.40ch02:35891251..35896029- go_terms:GO:0030528 functional_description:"Brassinosteroid signaling positive regulator-related protein (Fragment) (AHRD V1 *--* B3VVE5_POPTN); contains Interpro domain(s) IPR008540 BZR1, transcriptional repressor "; GO:0030528 NbS00013884g0003.1 protein NbS00012643g0001.1 protein NbC24844749g0001.1 protein ; (*GB) gi|255582813|ref|XP_002532180.1| (e_value=1e-43) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SJ12|ATP7_ARATH (e_value=1e-37) Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1;; (*TAIR) AT2G21870.1 (e_value=1e-38) | Symbols: MGP1 | copper ion binding;cobalt ion binding;zinc ion binding | chr2:9320456-9322618 REVERSE LENGTH=240;; (*ITAG) Solyc00g009020.2.1 (e_value=4e-47) genomic_reference:SL2.40ch00 gene_region:8742084-8746574 transcript_region:SL2.40ch00:8742084..8746574+ go_terms:GO:0008270,GO:0050897,GO:0005507 functional_description:"Mitochondrial ATP synthase (AHRD V1 ***- B6TLY8_MAIZE)"; GO:0008270,GO:0050897,GO:0005507 NbS00019064g0001.1 protein ; (*GB) gi|225427595|ref|XP_002270679.1| (e_value=6e-75) PREDICTED: uncharacterized zinc finger CCHC domain-containing protein At4g19190 [Vitis vinifera];; (*SWP) sp|Q8VZ67|Y4919_ARATH (e_value=5e-68) Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana GN=At4g19190 PE=2 SV=1;; (*TAIR) AT4G19190.1 (e_value=4e-69) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:10493323-10495969 FORWARD LENGTH=595;; (*ITAG) Solyc08g075420.2.1 (e_value=7e-94) genomic_reference:SL2.40ch08 gene_region:56716267-56722530 transcript_region:SL2.40ch08:56716267..56722530- functional_description:"Uncharacterized zinc finger CCHC domain-containing protein At4g19190 (AHRD V1 *--- Y4919_ARATH); contains Interpro domain(s) IPR019339 CBF1-interacting co-repressor CIR, N-terminal "; NbS00019320g0003.1 protein NbS00016171g0002.1 protein NbC25238246g0001.1 protein ; (*GB) gi|225445170|ref|XP_002284107.1| (e_value=7e-30) PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform 1 [Vitis vinifera];; (*TAIR) AT3G22320.1 (e_value=4e-24) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=3e-28) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00032605g0002.1 protein NbS00048972g0001.1 protein NbS00048972g0002.1 protein NbS00048972g0003.1 protein NbS00018628g0003.1 protein NbS00024788g0003.1 protein NbS00037555g0001.1 protein NbS00037555g0002.1 protein NbS00029353g0002.1 protein NbC24656696g0001.1 protein ; (*ITAG) Solyc03g113090.2.1 (e_value=8e-30) genomic_reference:SL2.40ch03 gene_region:57427944-57430724 transcript_region:SL2.40ch03:57427944..57430724+ functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 ***- Q9FJJ1_ARATH)"; NbS00024332g0001.1 protein ; (*GB) gi|225435287|ref|XP_002282268.1| (e_value=3e-132) PREDICTED: uncharacterized protein LOC100265658 [Vitis vinifera];; (*TAIR) AT5G60520.1 (e_value=8e-128) | Symbols: | Late embryogenesis abundant (LEA) protein-related | chr5:24331787-24332947 REVERSE LENGTH=338;; (*ITAG) Solyc11g069280.1.1 (e_value=7e-165) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50990674-50992158 transcript_region:SL2.40ch11:50990674..50992158- functional_description:"Root cap protein 1 (Fragment) (AHRD V1 *-*- Q1HVB0_MESVI); contains Interpro domain(s) IPR009646 Root cap "; NbS00029393g0101.1 protein NbS00017267g0001.1 protein NbS00017267g0002.1 protein NbS00012211g0001.1 protein NbS00002492g0002.1 protein NbC25246750g0001.1 protein NbS00024109g0001.1 protein NbS00061292g0001.1 protein ; (*GB) gi|304304318|gb|ADM21465.1| (e_value=1e-130) alpha-dioxygenase 2 [Nicotiana attenuata];; (*TAIR) AT1G73680.1 (e_value=2e-94) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=631;; (*ITAG) Solyc03g119060.2.1 (e_value=2e-126) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00030878g0001.1 protein NbS00004907g0002.1 protein NbC23260500g0001.1 protein ; (*GB) gi|319718191|gb|ADV59397.1| (e_value=8e-17) GAGA-binding transcriptional activator [Solanum tuberosum];; (*ITAG) Solyc04g081170.2.1 (e_value=9e-19) genomic_reference:SL2.40ch04 gene_region:62777470-62778961 transcript_region:SL2.40ch04:62777470..62778961+ go_terms:GO:0003700 functional_description:"GAGA-binding transcriptional activator (AHRD V1 ***- A1E2T9_MEDTR); contains Interpro domain(s) IPR010409 GAGA binding-like "; GO:0003700 NbS00032527g0002.1 protein NbC24977374g0001.1 protein ; (*GB) gi|297740562|emb|CBI30744.3| (e_value=1e-44) unnamed protein product [Vitis vinifera];; (*SWP) sp|C0LGG7|Y1534_ARATH (e_value=5e-28) Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2;; (*TAIR) AT1G53420.1 (e_value=4e-29) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:19926626-19931494 REVERSE LENGTH=953;; (*ITAG) Solyc02g071810.2.1 (e_value=2e-62) genomic_reference:SL2.40ch02 gene_region:35737283-35746207 transcript_region:SL2.40ch02:35737283..35746207- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0016301 NbS00002171g0102.1 protein NbS00002171g0104.1 protein NbS00056838g0001.1 protein ; (*GB) gi|357437071|ref|XP_003588811.1| (e_value=1e-26) F-box/FBD/LRR-repeat protein [Medicago truncatula];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=2e-25) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=1e-26) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=4e-72) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00055219g0001.1 protein ; (*GB) gi|3914403|sp|O24164.1|PPOM_TOBAC (e_value=6e-54) RecName: Full=Protoporphyrinogen oxidase, mitochondrial; AltName: Full=PX-2; AltName: Full=Protoporphyrinogen IX oxidase isozyme II; Short=PPO II; Short=PPX II;; (*SWP) sp|O24164|PPOM_TOBAC (e_value=2e-55) Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1;; (*TAIR) AT5G14220.1 (e_value=9e-39) | Symbols: HEMG2, MEE61, PPO2 | Flavin containing amine oxidoreductase family | chr5:4583506-4587369 REVERSE LENGTH=508;; (*ITAG) Solyc03g005080.2.1 (e_value=1e-52) genomic_reference:SL2.40ch03 gene_region:54076-59635 transcript_region:SL2.40ch03:54076..59635- go_terms:GO:0055114 functional_description:"Protoporphyrinogen IX oxidase (AHRD V1 ***- Q9SLW5_SOYBN); contains Interpro domain(s) IPR004572 Protoporphyrinogen oxidase "; GO:0055114 NbS00013027g0002.1 protein NbS00059952g0001.1 protein NbS00037560g0001.1 protein ; (*GB) gi|297746157|emb|CBI16213.3| (e_value=4e-16) unnamed protein product [Vitis vinifera];; (*SWP) sp|P92939|ECA1_ARATH (e_value=3e-16) Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2;; (*TAIR) AT1G07810.1 (e_value=3e-17) | Symbols: ECA1, ATECA1, ACA3 | ER-type Ca2+-ATPase 1 | chr1:2416681-2420572 FORWARD LENGTH=1061;; (*ITAG) Solyc11g072880.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53131340-53136535 transcript_region:SL2.40ch11:53131340..53136535- go_terms:GO:0016020,GO:0008152,GO:0016021 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR005782 ATPase, P-type, calcium-transporting "; GO:0016020,GO:0008152,GO:0016021 NbC24562167g0001.1 protein ; (*GB) gi|359476827|ref|XP_003631895.1| (e_value=1e-32) PREDICTED: transformation/transcription domain-associated protein [Vitis vinifera];; (*TAIR) AT2G17930.1 (e_value=3e-34) | Symbols: | Phosphatidylinositol 3- and 4-kinase family protein with FAT domain | chr2:7784455-7802230 REVERSE LENGTH=3858;; (*ITAG) Solyc02g083900.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00061251g0001.1 protein NbC24055048g0001.1 protein ; (*GB) gi|149925803|ref|ZP_01914067.1| (e_value=3e-56) Imidazoleglycerol-phosphate dehydratase [Limnobacter sp. MED105];; (*SWP) sp|Q3SEU5|HIS7_THIDA (e_value=5e-44) Imidazoleglycerol-phosphate dehydratase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hisB PE=3 SV=1;; (*TAIR) AT3G22425.1 (e_value=3e-31) | Symbols: IGPD, HISN5A | imidazoleglycerol-phosphate dehydratase | chr3:7951110-7952537 FORWARD LENGTH=264;; (*ITAG) Solyc09g076020.2.1 (e_value=1e-30) genomic_reference:SL2.40ch09 gene_region:63204638-63210368 transcript_region:SL2.40ch09:63204638..63210368+ go_terms:GO:0004424 functional_description:"Imidazoleglycerol-phosphate dehydratase (AHRD V1 **** B9RTS0_RICCO); contains Interpro domain(s) IPR000807 Imidazole glycerol-phosphate dehydratase "; GO:0004424 NbS00018265g0001.1 protein NbS00022487g0002.1 protein NbS00042867g0001.1 protein NbS00041498g0001.1 protein ; (*GB) gi|357441747|ref|XP_003591151.1| (e_value=2e-18) hypothetical protein MTR_1g083390 [Medicago truncatula];; (*TAIR) AT2G47700.1 (e_value=2e-18) | Symbols: RFI2 | RING/U-box superfamily protein | chr2:19552506-19554351 REVERSE LENGTH=358;; (*ITAG) Solyc05g054290.1.1 (e_value=8e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:63385168-63386702 transcript_region:SL2.40ch05:63385168..63386702+ go_terms:GO:0008270 functional_description:"Os05g0154600 protein (Fragment) (AHRD V1 *-*- Q0DKM6_ORYSJ); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00023770g0001.1 protein NbS00023770g0002.1 protein NbS00029257g0001.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00023245g0003.1 protein ; (*GB) gi|255565278|ref|XP_002523631.1| (e_value=3e-37) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G17080.1 (e_value=3e-13) | Symbols: | Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263;; (*ITAG) Solyc02g083120.1.1 (e_value=2e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:41214861-41215814 transcript_region:SL2.40ch02:41214861..41215814+ functional_description:"CM0216.240.nc protein (AHRD V1 ***- B0BLH5_LOTJA); contains Interpro domain(s) IPR004320 Protein of unknown function DUF241, plant "; NbS00039776g0001.1 protein ; (*ITAG) Solyc09g061420.2.1 (e_value=3e-23) genomic_reference:SL2.40ch09 gene_region:54682596-54695544 transcript_region:SL2.40ch09:54682596..54695544- functional_description:"Os02g0515000 protein (Fragment) (AHRD V1 *-*- Q0E0X2_ORYSJ)"; NbC25290370g0001.1 protein ; (*ITAG) Solyc04g080770.2.1 (e_value=3e-46) genomic_reference:SL2.40ch04 gene_region:62453995-62459810 transcript_region:SL2.40ch04:62453995..62459810- go_terms:GO:0005525 functional_description:"GTP-binding protein hflX (AHRD V1 **** B6SXP6_MAIZE); contains Interpro domain(s) IPR016496 GTP-binding protein, HflX "; GO:0005525 NbS00017701g0001.1 protein NbS00000841g0002.1 protein NbS00051144g0001.1 protein ; (*GB) gi|357441817|ref|XP_003591186.1| (e_value=6e-133) WD repeat-containing protein [Medicago truncatula];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=6e-86) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.1 (e_value=5e-87) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108;; (*ITAG) Solyc01g100050.2.1 (e_value=1e-160) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbC24229551g0001.1 protein ; (*GB) gi|359484307|ref|XP_002279505.2| (e_value=1e-14) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*ITAG) Solyc07g039500.2.1 (e_value=4e-17) genomic_reference:SL2.40ch07 gene_region:44930650-44935280 transcript_region:SL2.40ch07:44930650..44935280+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK64_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00057979g0001.1 protein ; (*GB) gi|296086046|emb|CBI31487.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g049120.2.1 (e_value=3e-30) genomic_reference:SL2.40ch04 gene_region:38848674-38858241 transcript_region:SL2.40ch04:38848674..38858241+ go_terms:GO:0003677 functional_description:"Nuclear receptor corepressor 2 (AHRD V1 *-*- Q19LF0_PIG); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00001532g0002.1 protein NbS00054504g0001.1 protein NbS00027901g0002.1 protein NbC25415551g0001.1 protein ; (*GB) gi|359473903|ref|XP_002271391.2| (e_value=2e-38) PREDICTED: protein SPA1-RELATED 2-like, partial [Vitis vinifera];; (*SWP) sp|Q9T014|SPA2_ARATH (e_value=4e-17) Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2;; (*TAIR) AT4G11110.1 (e_value=3e-18) | Symbols: SPA2 | SPA1-related 2 | chr4:6772163-6776675 FORWARD LENGTH=1036;; (*ITAG) Solyc08g081990.2.1 (e_value=3e-90) genomic_reference:SL2.40ch08 gene_region:62067369-62074700 transcript_region:SL2.40ch08:62067369..62074700- go_terms:GO:0042802 functional_description:"WD-40 repeat (AHRD V1 *--- Q3M9A6_ANAVT); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042802 NbS00008009g0004.1 protein NbS00055318g0001.1 protein ; (*GB) gi|297744269|emb|CBI37239.3| (e_value=3e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G20210.1 (e_value=4e-21) | Symbols: | RNI-like superfamily protein | chr2:8721606-8725042 REVERSE LENGTH=604;; (*ITAG) Solyc06g083640.2.1 (e_value=6e-71) genomic_reference:SL2.40ch06 gene_region:45269925-45278062 transcript_region:SL2.40ch06:45269925..45278062- go_terms:GO:0005515 functional_description:"Leucine-rich repeat family protein (AHRD V1 **-- D7L5A3_ARALY); contains Interpro domain(s) IPR001611 Leucine-rich repeat "; GO:0005515 NbS00047342g0001.1 protein NbS00026297g0001.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=5e-23) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum]; NbS00015485g0001.1 protein NbS00016881g0001.1 protein NbC24578849g0001.1 protein ; (*GB) gi|297738009|emb|CBI27210.3| (e_value=7e-73) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9S7J8|HMA7_ARATH (e_value=6e-61) Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1;; (*TAIR) AT5G44790.1 (e_value=5e-62) | Symbols: RAN1, HMA7 | copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) | chr5:18075846-18079817 REVERSE LENGTH=1001;; (*ITAG) Solyc02g068490.2.1 (e_value=6e-89) genomic_reference:SL2.40ch02 gene_region:33002915-33011246 transcript_region:SL2.40ch02:33002915..33011246- go_terms:GO:0004008 functional_description:"Copper transporting ATPase 2 (AHRD V1 **** D4N237_SPAAU); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00006695g0001.1 protein NbC26073398g0001.1 protein ; (*GB) gi|77416945|gb|ABA81868.1| (e_value=1e-22) unknown [Solanum tuberosum];; (*TAIR) AT5G44140.1 (e_value=1e-20) | Symbols: ATPHB7, PHB7 | prohibitin 7 | chr5:17762491-17763629 FORWARD LENGTH=278;; (*ITAG) Solyc10g008140.2.1 (e_value=5e-26) genomic_reference:SL2.40ch10 gene_region:2276303-2278610 transcript_region:SL2.40ch10:2276303..2278610+ go_terms:GO:0016020 functional_description:"Prohibitin 1-like protein (AHRD V1 ***- Q9AXM0_BRANA); contains Interpro domain(s) IPR000163 Prohibitin "; GO:0016020 NbS00022774g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00010403g0002.1 protein ; (*GB) gi|157042753|gb|ABV02028.1| (e_value=7e-37) mevalonate diphosphate decarboxylase [Nicotiana langsdorffii x Nicotiana sanderae];; (*TAIR) AT3G54250.1 (e_value=4e-28) | Symbols: | GHMP kinase family protein | chr3:20082468-20084688 REVERSE LENGTH=419;; (*ITAG) Solyc04g009650.2.1 (e_value=2e-38) genomic_reference:SL2.40ch04 gene_region:3019293-3024735 transcript_region:SL2.40ch04:3019293..3024735- go_terms:GO:0004163,GO:0042803 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 **** Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0004163,GO:0042803 NbS00061590g0001.1 protein ; (*GB) gi|171854667|dbj|BAG16523.1| (e_value=3e-40) putative NADPH oxidoreductase [Capsicum chinense];; (*TAIR) AT1G49670.2 (e_value=2e-29) | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=652;; (*ITAG) Solyc01g108150.2.1 (e_value=7e-42) genomic_reference:SL2.40ch01 gene_region:87266478-87282799 transcript_region:SL2.40ch01:87266478..87282799- go_terms:GO:0008152,GO:0016491,GO:0055114 functional_description:"Oxidoreductase zinc-binding dehydrogenase family protein (AHRD V1 *--- Q22RF9_TETTH); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0008152,GO:0016491,GO:0055114 NbS00026856g0001.1 protein NbC25400300g0001.1 protein ; (*ITAG) Solyc09g098110.2.1 (e_value=1e-18) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00008410g0001.1 protein ; (*GB) gi|356511754|ref|XP_003524588.1| (e_value=9e-67) PREDICTED: replication factor C subunit 3-like [Glycine max];; (*SWP) sp|P40938|RFC3_HUMAN (e_value=3e-40) Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2;; (*TAIR) AT5G27740.1 (e_value=2e-65) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354;; (*ITAG) Solyc01g020440.2.1 (e_value=2e-73) genomic_reference:SL2.40ch01 gene_region:30867272-30881047 transcript_region:SL2.40ch01:30867272..30881047- go_terms:GO:0005515,GO:0003689 functional_description:"Replication factor C subunit 5 (AHRD V1 ***- B6T5I0_MAIZE); contains Interpro domain(s) IPR019483 DNA polymerase III, clamp-loader complex, subunit E, C-terminal "; GO:0005515,GO:0003689 NbS00021172g0003.1 protein NbS00032221g0001.1 protein NbS00001480g0102.1 protein NbS00020139g0001.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00035349g0001.1 protein NbC23626683g0001.1 protein ; (*GB) gi|149926167|ref|ZP_01914429.1| (e_value=5e-33) malate dehydrogenase [Limnobacter sp. MED105];; (*SWP) sp|B2JQD2|MDH_BURP8 (e_value=5e-28) Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1;; (*TAIR) AT1G04410.1 (e_value=8e-17) | Symbols: | Lactate/malate dehydrogenase family protein | chr1:1189418-1191267 REVERSE LENGTH=332;; (*ITAG) Solyc09g090140.2.1 (e_value=6e-17) genomic_reference:SL2.40ch09 gene_region:65031288-65034684 transcript_region:SL2.40ch09:65031288..65034684- go_terms:GO:0005515,GO:0030060 functional_description:"Malate dehydrogenase (AHRD V1 **** Q2PYY8_SOLTU); contains Interpro domain(s) IPR011274 Malate dehydrogenase, NAD-dependent, cytosolic "; GO:0005515,GO:0030060 NbS00045362g0001.1 protein ; (*ITAG) Solyc07g065430.2.1 (e_value=6e-47) genomic_reference:SL2.40ch07 gene_region:64411861-64416712 transcript_region:SL2.40ch07:64411861..64416712- go_terms:GO:0030001,GO:0005694 functional_description:"DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI); contains Interpro domain(s) IPR013048 Meiotic recombination Spo11 "; GO:0030001,GO:0005694 NbC23269830g0001.1 protein ; (*GB) gi|302142629|emb|CBI19832.3| (e_value=5e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M4P3|PP316_ARATH (e_value=3e-22) Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3;; (*TAIR) AT4G16835.1 (e_value=3e-23) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9472763-9474803 FORWARD LENGTH=656;; (*ITAG) Solyc04g082870.1.1 (e_value=4e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63975254-63977668 transcript_region:SL2.40ch04:63975254..63977668- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KAJ5_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00055605g0002.1 protein ; (*GB) gi|255550353|ref|XP_002516227.1| (e_value=4e-35) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G34357.1 (e_value=2e-31) | Symbols: | ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280;; (*ITAG) Solyc07g042380.2.1 (e_value=4e-49) genomic_reference:SL2.40ch07 gene_region:52832624-52846801 transcript_region:SL2.40ch07:52832624..52846801- go_terms:GO:0005488 functional_description:"Ribosomal RNA processing protein (AHRD V1 *--- A6ZWN4_YEAS7); contains Interpro domain(s) IPR012978 Region of unknown function, NUC173 "; GO:0005488 NbS00031862g0002.1 protein NbS00002125g0003.1 protein NbS00059268g0001.1 protein ; (*ITAG) Solyc10g054400.1.1 (e_value=4e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:50747331-50748161 transcript_region:SL2.40ch10:50747331..50748161- go_terms:GO:0005674,GO:0006367 functional_description:"General transcription factor IIF subunit 2 (AHRD V1 ***- T2FB_DROME); contains Interpro domain(s) IPR003196 Transcription initiation factor IIF, beta subunit "; GO:0005674,GO:0006367 NbS00005986g0001.1 protein NbS00013442g0001.1 protein NbS00038838g0001.1 protein NbC25914434g0001.1 protein NbS00011257g0002.1 protein NbS00026215g0003.1 protein NbS00032410g0001.1 protein NbS00036542g0001.1 protein NbS00009787g0103.1 protein NbS00017491g0002.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-16) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00006890g0102.1 protein NbS00016522g0001.1 protein NbS00002615g0004.1 protein NbS00005917g0002.1 protein NbS00005917g0004.1 protein NbS00011360g0001.1 protein NbS00019729g0003.1 protein NbC25741991g0001.1 protein ; (*GB) gi|255543715|ref|XP_002512920.1| (e_value=2e-61) ribosomal RNA methyltransferase, putative [Ricinus communis];; (*TAIR) AT4G25730.1 (e_value=2e-52) | Symbols: | FtsJ-like methyltransferase family protein | chr4:13102906-13106718 REVERSE LENGTH=821;; (*ITAG) Solyc11g020820.1.1 (e_value=2e-127) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:12209025-12216432 transcript_region:SL2.40ch11:12209025..12216432- go_terms:GO:0031167,GO:0005634,GO:0032259 functional_description:"Ribosomal RNA large subunit methyltransferase J family protein (AHRD V1 *-*- A7APJ4_BABBO); contains Interpro domain(s) IPR015507 Ribosomal RNA methyltransferase J "; GO:0031167,GO:0005634,GO:0032259 NbS00024780g0002.1 protein NbC23814295g0001.1 protein ; (*GB) gi|125556630|gb|EAZ02236.1| (e_value=4e-56) hypothetical protein OsI_24333 [Oryza sativa Indica Group];; (*SWP) sp|P55876|IF5_MAIZE (e_value=3e-56) Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1;; (*TAIR) AT1G36730.1 (e_value=2e-52) | Symbols: | Translation initiation factor IF2/IF5 | chr1:13898706-13900025 REVERSE LENGTH=439;; (*ITAG) Solyc02g091210.1.1 (e_value=1e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:47167119-47168471 transcript_region:SL2.40ch02:47167119..47168471+ go_terms:GO:0006413,GO:0005488 functional_description:"Eukaryotic translation initiation factor 5 (AHRD V1 ***- B6T7C2_MAIZE); contains Interpro domain(s) IPR002735 Translation initiation factor IF2/IF5 "; GO:0006413,GO:0005488 NbS00012575g0002.1 protein ; (*GB) gi|388505788|gb|AFK40960.1| (e_value=1e-37) unknown [Lotus japonicus];; (*TAIR) AT1G04420.1 (e_value=3e-33) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc06g053600.2.1 (e_value=2e-50) genomic_reference:SL2.40ch06 gene_region:32897410-32909873 transcript_region:SL2.40ch06:32897410..32909873- go_terms:GO:0050236 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 ***- Q10GW4_ORYSJ); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0050236 NbS00029339g0002.1 protein ; (*GB) gi|359487856|ref|XP_003633666.1| (e_value=3e-28) PREDICTED: WD repeat-containing protein 48 homolog isoform 2 [Vitis vinifera];; (*TAIR) AT3G05090.2 (e_value=3e-23) | Symbols: LRS1 | Transducin/WD40 repeat-like superfamily protein | chr3:1418573-1422723 REVERSE LENGTH=753;; (*ITAG) Solyc01g098090.2.1 (e_value=1e-35) genomic_reference:SL2.40ch01 gene_region:80448180-80461748 transcript_region:SL2.40ch01:80448180..80461748+ go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 ***- B6JWM7_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0005515,GO:0000166 NbS00050939g0001.1 protein NbC24007533g0001.1 protein ; (*GB) gi|62177685|gb|AAL26864.2|AF314924_1 (e_value=4e-54) NADH glutamate synthase precursor [Phaseolus vulgaris];; (*SWP) sp|Q03460|GLSN_MEDSA (e_value=2e-54) Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1;; (*TAIR) AT5G53460.3 (e_value=4e-52) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=9e-59) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00032629g0003.1 protein ; (*GB) gi|297737854|emb|CBI27055.3| (e_value=9e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g070100.1.1 (e_value=8e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00020358g0001.1 protein ; (*GB) gi|57013917|ref|YP_173390.1| (e_value=4e-65) hypothetical protein NitaMp044 [Nicotiana tabacum]; NbS00020358g0002.1 protein NbS00043068g0001.1 protein ; (*GB) gi|224082802|ref|XP_002306845.1| (e_value=5e-69) high affinity inorganic phosphate transporter [Populus trichocarpa];; (*SWP) sp|Q96303|PHT14_ARATH (e_value=1e-61) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=1e-62) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc06g034200.1.1 (e_value=2e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:20519555-20521159 transcript_region:SL2.40ch06:20519555..20521159+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00004512g0001.1 protein ; (*GB) gi|224107237|ref|XP_002314418.1| (e_value=1e-76) predicted protein [Populus trichocarpa];; (*SWP) sp|Q67XQ0|Y4424_ARATH (e_value=1e-72) DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1;; (*TAIR) AT4G14240.1 (e_value=1e-73) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr4:8204712-8207273 REVERSE LENGTH=494;; (*ITAG) Solyc01g080160.2.1 (e_value=2e-87) genomic_reference:SL2.40ch01 gene_region:71859758-71868013 transcript_region:SL2.40ch01:71859758..71868013+ functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00030023g0001.1 protein NbS00011401g0102.1 protein NbS00011401g0104.1 protein NbS00057983g0003.1 protein ; (*GB) gi|255556011|ref|XP_002519040.1| (e_value=3e-31) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q84WQ5|CBSX5_ARATH (e_value=2e-21) CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana GN=CBSX5 PE=2 SV=2;; (*TAIR) AT4G27460.1 (e_value=1e-22) | Symbols: | Cystathionine beta-synthase (CBS) family protein | chr4:13732939-13734263 FORWARD LENGTH=391;; (*ITAG) Solyc10g009010.2.1 (e_value=6e-63) genomic_reference:SL2.40ch10 gene_region:3040315-3046302 transcript_region:SL2.40ch10:3040315..3046302+ functional_description:"CBS domain containing protein-like (AHRD V1 **-- Q6ZIB3_ORYSJ); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00000067g0203.1 protein NbS00000067g0205.1 protein NbS00013238g0001.1 protein NbS00013238g0101.1 protein NbS00020645g0001.1 protein ; (*ITAG) Solyc11g016990.1.1 (e_value=7e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:7660095-7671231 transcript_region:SL2.40ch11:7660095..7671231+ go_terms:GO:0016311,GO:0006470 functional_description:"Receptor-type tyrosine-protein phosphatase S (AHRD V1 ***- B6TAK5_MAIZE); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0016311,GO:0006470 NbS00020645g0002.1 protein NbS00041136g0001.1 protein NbS00059641g0001.1 protein ; (*GB) gi|255538484|ref|XP_002510307.1| (e_value=7e-23) transcriptional adaptor, putative [Ricinus communis];; (*SWP) sp|Q9ATB4|TAD2B_ARATH (e_value=1e-18) Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1 SV=1;; (*TAIR) AT4G16420.3 (e_value=8e-20) | Symbols: ADA2B, PRZ1 | homolog of yeast ADA2 2B | chr4:9262805-9265775 REVERSE LENGTH=486;; (*ITAG) Solyc07g047610.2.1 (e_value=3e-58) genomic_reference:SL2.40ch07 gene_region:56150637-56166439 transcript_region:SL2.40ch07:56150637..56166439- go_terms:GO:0003713 functional_description:"Transcriptional adapter 2 (AHRD V1 *-*- B6K677_SCHJY); contains Interpro domain(s) IPR016827 Transcriptional adaptor 2 "; GO:0003713 NbS00019243g0002.1 protein ; (*ITAG) Solyc09g042250.1.1 (e_value=7e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:27230673-27232058 transcript_region:SL2.40ch09:27230673..27232058+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M869_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00019243g0003.1 protein ; (*GB) gi|224140601|ref|XP_002323670.1| (e_value=4e-68) predicted protein [Populus trichocarpa];; (*SWP) sp|Q3EDF8|PPR28_ARATH (e_value=3e-31) Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1;; (*TAIR) AT1G09900.1 (e_value=2e-32) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=598;; (*ITAG) Solyc09g042250.1.1 (e_value=2e-91) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:27230673-27232058 transcript_region:SL2.40ch09:27230673..27232058+ go_terms:GO:0008270,GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M869_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008270,GO:0003723 NbS00014844g0104.1 protein NbC24634292g0001.1 protein ; (*GB) gi|151347486|gb|ABS01352.1| (e_value=9e-73) methionine synthase [Carica papaya];; (*SWP) sp|P93263|METE_MESCR (e_value=1e-72) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=3e-70) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00002226g0001.1 protein ; (*GB) gi|224098461|ref|XP_002311182.1| (e_value=8e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|P50165|TRNH_DATST (e_value=3e-31) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT5G06060.1 (e_value=3e-37) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264;; (*ITAG) Solyc06g083470.2.1 (e_value=2e-53) genomic_reference:SL2.40ch06 gene_region:45158037-45159823 transcript_region:SL2.40ch06:45158037..45159823- go_terms:GO:0008152,GO:0055114 functional_description:"Tropinone reductase-like protein 16 (AHRD V1 **-- B2BXZ1_9BRAS); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00007352g0003.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=1e-14) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00007258g0001.1 protein NbC24340880g0001.1 protein ; (*GB) gi|82697975|gb|ABB89022.1| (e_value=9e-73) CXE carboxylesterase [Actinidia deliciosa];; (*SWP) sp|Q9LK21|CXE11_ARATH (e_value=1e-69) Probable carboxylesterase 11 OS=Arabidopsis thaliana GN=CXE11 PE=2 SV=1;; (*TAIR) AT3G27320.1 (e_value=7e-71) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:10090307-10092391 FORWARD LENGTH=460;; (*ITAG) Solyc02g093790.2.1 (e_value=7e-79) genomic_reference:SL2.40ch02 gene_region:49084876-49088035 transcript_region:SL2.40ch02:49084876..49088035- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU8_ACTDE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00007004g0001.1 protein NbS00000695g0201.1 protein NbS00001181g0005.1 protein NbS00060108g0001.1 protein ; (*GB) gi|164454785|dbj|BAF96939.1| (e_value=1e-101) flavonol synthase [Nicotiana tabacum];; (*SWP) sp|Q07512|FLS_PETHY (e_value=4e-91) Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1;; (*TAIR) AT5G08640.2 (e_value=3e-54) | Symbols: FLS1 | flavonol synthase 1 | chr5:2804009-2805175 FORWARD LENGTH=336;; (*ITAG) Solyc11g013110.1.1 (e_value=4e-84) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5961440-5965680 transcript_region:SL2.40ch11:5961440..5965680+ go_terms:GO:0045431 functional_description:"Anthocyanidin synthase (AHRD V1 **** B2M0X8_GINBI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045431 NbS00052147g0001.1 protein ; (*GB) gi|224133332|ref|XP_002328016.1| (e_value=2e-38) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g073140.1.1 (e_value=2e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41449237-41452400 transcript_region:SL2.40ch06:41449237..41452400- functional_description:"Unknown Protein (AHRD V1)"; NbS00012508g0002.1 protein NbC23662714g0001.1 protein ; (*GB) gi|359479838|ref|XP_002270509.2| (e_value=1e-27) PREDICTED: cohesin subunit SA-1-like [Vitis vinifera];; (*TAIR) AT2G47980.1 (e_value=2e-26) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=8e-34) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00017666g0002.1 protein NbS00006948g0009.1 protein NbS00000381g0104.1 protein NbS00022188g0003.1 protein NbS00022188g0004.1 protein NbS00003933g0002.1 protein NbS00035683g0003.1 protein NbS00007309g0006.1 protein ; (*GB) gi|4151068|emb|CAA71816.1| (e_value=4e-68) ribonucleotide reductase [Nicotiana tabacum];; (*SWP) sp|Q9SJ20|RIR1_ARATH (e_value=3e-58) Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana GN=RNR1 PE=1 SV=1;; (*TAIR) AT2G21790.1 (e_value=2e-59) | Symbols: R1, RNR1, CLS8, ATRNR1 | ribonucleotide reductase 1 | chr2:9293529-9297580 FORWARD LENGTH=816;; (*ITAG) Solyc04g051350.2.1 (e_value=2e-68) genomic_reference:SL2.40ch04 gene_region:49555023-49560819 transcript_region:SL2.40ch04:49555023..49560819+ go_terms:GO:0005515,GO:0016959 functional_description:"Ribonucleoside-diphosphate reductase (AHRD V1 **** Q9ZR57_TOBAC); contains Interpro domain(s) IPR013346 Ribonucleoside-diphosphate reductase, alpha subunit "; GO:0005515,GO:0016959 NbS00021090g0005.1 protein NbS00021394g0101.1 protein NbS00013202g0001.1 protein ; (*ITAG) Solyc02g094810.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49909990-49911531 transcript_region:SL2.40ch02:49909990..49911531- functional_description:"Unknown Protein (AHRD V1)"; NbS00013202g0004.1 protein NbS00002327g0002.1 protein ; (*GB) gi|224142976|ref|XP_002324803.1| (e_value=1e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc08g066770.2.1 (e_value=8e-42) genomic_reference:SL2.40ch08 gene_region:52808097-52813393 transcript_region:SL2.40ch08:52808097..52813393- go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00021552g0001.1 protein ; (*GB) gi|147780183|emb|CAN75527.1| (e_value=7e-68) hypothetical protein VITISV_043600 [Vitis vinifera];; (*TAIR) AT3G56290.1 (e_value=5e-59) | Symbols: | unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:20878743-20879541 REVERSE LENGTH=173;; (*ITAG) Solyc06g050170.2.1 (e_value=1e-66) genomic_reference:SL2.40ch06 gene_region:29143972-29153122 transcript_region:SL2.40ch06:29143972..29153122+ go_terms:GO:0009674 functional_description:"Potassium transporter (AHRD V1 **** Q1T761_PHRAU); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0009674 NbS00010631g0001.1 protein NbS00024893g0001.1 protein NbS00029736g0002.1 protein NbS00017119g0006.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=4e-29) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=4e-19) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426; NbS00008695g0002.1 protein NbS00008695g0004.1 protein NbS00008695g0005.1 protein ; (*ITAG) Solyc09g089550.2.1 (e_value=2e-15) genomic_reference:SL2.40ch09 gene_region:64600682-64605131 transcript_region:SL2.40ch09:64600682..64605131- functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 *--- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; NbC23545506g0001.1 protein ; (*GB) gi|115458130|ref|NP_001052665.1| (e_value=4e-49) Os04g0397100 [Oryza sativa Japonica Group];; (*SWP) sp|P31542|CLPAB_SOLLC (e_value=2e-48) ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1;; (*TAIR) AT3G48870.2 (e_value=7e-49) | Symbols: HSP93-III | Clp ATPase | chr3:18122363-18125915 REVERSE LENGTH=921;; (*ITAG) Solyc12g042060.1.1 (e_value=1e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42533149-42537576 transcript_region:SL2.40ch12:42533149..42537576+ go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0006289 functional_description:"ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0006289 NbS00008315g0001.1 protein NbS00003636g0002.1 protein NbS00002137g0102.1 protein NbS00002137g0202.1 protein NbS00000058g0001.1 protein NbS00022031g0004.1 protein NbS00026021g0004.1 protein ; (*ITAG) Solyc04g054680.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52132405-52134862 transcript_region:SL2.40ch04:52132405..52134862+ go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00000683g0002.1 protein NbC24808003g0001.1 protein ; (*GB) gi|359480838|ref|XP_002276798.2| (e_value=9e-122) PREDICTED: uncharacterized protein LOC100264630 [Vitis vinifera];; (*TAIR) AT2G22125.1 (e_value=3e-118) | Symbols: CSI1 | binding | chr2:9406793-9414223 FORWARD LENGTH=2150;; (*ITAG) Solyc11g017460.1.1 (e_value=3e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00010988g0001.1 protein NbS00004071g0001.1 protein ; (*GB) gi|357437889|ref|XP_003589220.1| (e_value=2e-14) Origin recognition complex subunit [Medicago truncatula];; (*SWP) sp|Q38899|ORC2_ARATH (e_value=3e-14) Origin recognition complex subunit 2 OS=Arabidopsis thaliana GN=ORC2 PE=1 SV=1;; (*TAIR) AT2G37560.2 (e_value=2e-15) | Symbols: ORC2, ATORC2 | origin recognition complex second largest subunit 2 | chr2:15759568-15761116 FORWARD LENGTH=345;; (*ITAG) Solyc06g073510.2.1 (e_value=6e-18) genomic_reference:SL2.40ch06 gene_region:41699563-41703139 transcript_region:SL2.40ch06:41699563..41703139+ go_terms:GO:0042802 functional_description:"Origin recognition complex subunit 2 (AHRD V1 ***- Q9XFD6_ORYSJ); contains Interpro domain(s) IPR007220 Origin recognition complex subunit 2 "; GO:0042802 NbS00004071g0002.1 protein NbS00004794g0005.1 protein ; (*GB) gi|356523499|ref|XP_003530375.1| (e_value=8e-80) PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max];; (*TAIR) AT5G04895.1 (e_value=3e-73) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00004794g0101.1 protein NbS00004794g0102.1 protein NbS00014042g0003.1 protein ; (*GB) gi|68449764|gb|AAY97869.1| (e_value=5e-41) ACI49 [Solanum lycopersicum];; (*TAIR) AT3G09520.1 (e_value=2e-34) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005840.1.1 (e_value=3e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00038909g0001.1 protein ; (*GB) gi|224125556|ref|XP_002319615.1| (e_value=1e-179) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VLT1|MON2_DROME (e_value=7e-33) Protein MON2 homolog OS=Drosophila melanogaster GN=mon2 PE=2 SV=4;; (*TAIR) AT5G27970.1 (e_value=6e-152) | Symbols: | ARM repeat superfamily protein | chr5:10004720-10015429 FORWARD LENGTH=1630;; (*ITAG) Solyc09g018370.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:14517641-14547669 transcript_region:SL2.40ch09:14517641..14547669+ go_terms:GO:0005488 functional_description:"Protein MON2 homolog (AHRD V1 *--- MON2_DROPS); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00004871g0003.1 protein NbS00010369g0001.1 protein NbS00000946g0004.1 protein NbS00019028g0001.1 protein NbS00027876g0001.1 protein NbS00020045g0001.1 protein NbS00029709g0001.1 protein ; (*GB) gi|224139952|ref|XP_002323356.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11930.1 (e_value=3e-34) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:3776371-3777393 FORWARD LENGTH=199;; (*ITAG) Solyc01g057000.2.1 (e_value=7e-35) genomic_reference:SL2.40ch01 gene_region:50798585-50800986 transcript_region:SL2.40ch01:50798585..50800986+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7LAT3_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00029709g0002.1 protein ; (*GB) gi|359481111|ref|XP_002266746.2| (e_value=6e-29) PREDICTED: universal stress protein A-like protein [Vitis vinifera];; (*TAIR) AT3G11930.1 (e_value=4e-25) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr3:3776371-3777393 FORWARD LENGTH=199;; (*ITAG) Solyc01g057000.2.1 (e_value=2e-49) genomic_reference:SL2.40ch01 gene_region:50798585-50800986 transcript_region:SL2.40ch01:50798585..50800986+ go_terms:GO:0006950 functional_description:"Universal stress protein family protein (AHRD V1 ***- D7LAT3_ARALY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00029709g0107.1 protein NbS00003724g0003.1 protein NbS00031150g0001.1 protein NbS00016473g0001.1 protein ; (*GB) gi|356506579|ref|XP_003522057.1| (e_value=6e-17) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Glycine max];; (*ITAG) Solyc01g098690.2.1 (e_value=8e-42) genomic_reference:SL2.40ch01 gene_region:80872891-80875991 transcript_region:SL2.40ch01:80872891..80875991+ go_terms:GO:0016301 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0016301 NbC23418051g0001.1 protein ; (*GB) gi|255573433|ref|XP_002527642.1| (e_value=9e-43) ribose-phosphate pyrophosphokinase, putative [Ricinus communis];; (*SWP) sp|O64888|KPRS5_ARATH (e_value=2e-42) Ribose-phosphate pyrophosphokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PRS5 PE=2 SV=2;; (*TAIR) AT2G44530.1 (e_value=2e-43) | Symbols: | Phosphoribosyltransferase family protein | chr2:18383732-18385974 FORWARD LENGTH=394;; (*ITAG) Solyc08g077200.2.1 (e_value=1e-45) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00045865g0001.1 protein ; (*GB) gi|147788258|emb|CAN60836.1| (e_value=1e-19) hypothetical protein VITISV_033822 [Vitis vinifera];; (*SWP) sp|Q17LW0|MYO7A_AEDAE (e_value=2e-17) Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1;; (*TAIR) AT1G04600.1 (e_value=5e-21) | Symbols: XIA, ATXIA | myosin XI A | chr1:1262123-1272376 FORWARD LENGTH=1730;; (*ITAG) Solyc09g091080.2.1 (e_value=5e-22) genomic_reference:SL2.40ch09 gene_region:65760237-65779915 transcript_region:SL2.40ch09:65760237..65779915+ go_terms:GO:0042803 functional_description:"Myosin XI-F (AHRD V1 ***- B0CN60_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00047492g0002.1 protein NbS00047492g0005.1 protein NbS00047492g0007.1 protein NbS00046368g0001.1 protein NbS00025456g0004.1 protein NbS00018742g0003.1 protein NbS00002076g0002.1 protein NbS00046304g0001.1 protein NbS00040103g0001.1 protein NbS00000631g0001.1 protein ; (*GB) gi|359487917|ref|XP_002271452.2| (e_value=3e-104) PREDICTED: acyltransferase-like protein At1g54570, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9ZVN2|Y1457_ARATH (e_value=8e-89) Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=1 SV=1;; (*TAIR) AT1G54570.1 (e_value=6e-90) | Symbols: | Esterase/lipase/thioesterase family protein | chr1:20380649-20384953 REVERSE LENGTH=704;; (*ITAG) Solyc01g098110.2.1 (e_value=6e-120) genomic_reference:SL2.40ch01 gene_region:80465152-80480438 transcript_region:SL2.40ch01:80465152..80480438+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7L9I6_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0003824 NbC23474090g0001.1 protein ; (*GB) gi|225425920|ref|XP_002272331.1| (e_value=2e-33) PREDICTED: probable carboxylesterase 11 [Vitis vinifera];; (*SWP) sp|Q9LK21|CXE11_ARATH (e_value=1e-32) Probable carboxylesterase 11 OS=Arabidopsis thaliana GN=CXE11 PE=2 SV=1;; (*TAIR) AT3G27320.2 (e_value=5e-34) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:10090307-10092391 FORWARD LENGTH=428;; (*ITAG) Solyc05g014320.2.1 (e_value=6e-40) genomic_reference:SL2.40ch05 gene_region:8154699-8157508 transcript_region:SL2.40ch05:8154699..8157508- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00030780g0001.1 protein NbS00015006g0001.1 protein NbS00015006g0103.1 protein NbS00001604g0001.1 protein NbS00007532g0001.1 protein ; (*GB) gi|356510499|ref|XP_003523975.1| (e_value=3e-18) PREDICTED: probable carbohydrate esterase At4g34215-like [Glycine max];; (*ITAG) Solyc12g088640.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62358770-62360394 transcript_region:SL2.40ch12:62358770..62360394- functional_description:"Acetyl xylan esterase A (AHRD V1 **-- C3QXY1_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00023730g0001.1 protein NbC24160679g0001.1 protein ; (*GB) gi|225463891|ref|XP_002264093.1| (e_value=3e-54) PREDICTED: uncharacterized protein LOC100246114 [Vitis vinifera];; (*TAIR) AT1G76950.1 (e_value=2e-50) | Symbols: PRAF1 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr1:28906952-28911325 FORWARD LENGTH=1103;; (*ITAG) Solyc04g071040.2.1 (e_value=3e-63) genomic_reference:SL2.40ch04 gene_region:55505152-55514903 transcript_region:SL2.40ch04:55505152..55514903- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00033378g0001.1 protein NbS00007015g0003.1 protein NbS00015734g0201.1 protein NbS00015734g0202.1 protein NbS00015734g0205.1 protein NbS00015734g0206.1 protein NbC23235833g0001.1 protein ; (*TAIR) AT3G24490.1 (e_value=9e-14) | Symbols: | Alcohol dehydrogenase transcription factor Myb/SANT-like family protein | chr3:8911022-8912023 FORWARD LENGTH=333;; (*ITAG) Solyc05g018350.2.1 (e_value=3e-17) genomic_reference:SL2.40ch05 gene_region:20593550-20598301 transcript_region:SL2.40ch05:20593550..20598301- go_terms:GO:0003700 functional_description:"Transcription factor (AHRD V1 **** D7L9U5_ARALY); contains Interpro domain(s) IPR006578 MADF domain "; GO:0003700 NbS00021506g0001.1 protein ; (*ITAG) Solyc03g083760.1.1 (e_value=9e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47227976-47228375 transcript_region:SL2.40ch03:47227976..47228375- functional_description:"Unknown Protein (AHRD V1)"; NbS00003328g0003.1 protein NbS00007843g0001.1 protein NbS00007843g0003.1 protein NbS00028987g0001.1 protein ; (*GB) gi|3283996|gb|AAC25423.1| (e_value=4e-84) calcium-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|O49717|CDPKF_ARATH (e_value=3e-77) Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1;; (*TAIR) AT4G21940.1 (e_value=2e-78) | Symbols: CPK15 | calcium-dependent protein kinase 15 | chr4:11640847-11643387 FORWARD LENGTH=554;; (*ITAG) Solyc03g031670.2.1 (e_value=4e-84) genomic_reference:SL2.40ch03 gene_region:8397378-8406044 transcript_region:SL2.40ch03:8397378..8406044- go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase (AHRD V1 **** Q8RW36_SOLLC); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00002388g0102.1 protein NbS00035339g0002.1 protein NbS00029312g0001.1 protein ; (*GB) gi|15822693|gb|AAL03950.1| (e_value=2e-59) relA/spoT-like protein RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=3e-23) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=2e-48) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=1e-55) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00003667g0004.1 protein NbS00013878g0004.1 protein NbS00026282g0001.1 protein NbS00010282g0003.1 protein NbS00003684g0001.1 protein NbS00006547g0003.1 protein NbC23674686g0001.1 protein ; (*GB) gi|255544744|ref|XP_002513433.1| (e_value=5e-39) Selenoprotein O, putative [Ricinus communis];; (*SWP) sp|Q1H0D2|Y1788_METFK (e_value=2e-21) UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1;; (*TAIR) AT5G13030.1 (e_value=1e-40) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). | chr5:4133216-4136461 FORWARD LENGTH=633;; (*ITAG) Solyc01g006490.2.1 (e_value=2e-43) genomic_reference:SL2.40ch01 gene_region:1081667-1087120 transcript_region:SL2.40ch01:1081667..1087120- functional_description:"Protein YdiU (AHRD V1 ***- B5N5F2_SALET); contains Interpro domain(s) IPR003846 Uncharacterised protein family UPF0061 "; NbS00020956g0002.1 protein NbS00021928g0002.1 protein NbS00021928g0005.1 protein ; (*GB) gi|350535953|ref|NP_001234478.1| (e_value=1e-48) xyloglucan endotransglucosylase-hydrolase XTH9 precursor [Solanum lycopersicum];; (*SWP) sp|P35694|BRU1_SOYBN (e_value=2e-34) Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1;; (*TAIR) AT4G25820.1 (e_value=5e-34) | Symbols: XTR9, XTH14, ATXTH14 | xyloglucan endotransglucosylase/hydrolase 14 | chr4:13130349-13131615 FORWARD LENGTH=287;; (*ITAG) Solyc12g011030.1.1 (e_value=2e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3892612-3893717 transcript_region:SL2.40ch12:3892612..3893717+ go_terms:GO:0005975,GO:0048046 functional_description:"Xyloglucan endotransglucosylase/hydrolase 7 (AHRD V1 ***- C0IRG6_ACTDE); contains Interpro domain(s) IPR016455 Xyloglucan endotransglucosylase/hydrolase "; GO:0005975,GO:0048046 NbS00048595g0003.1 protein NbC25549395g0001.1 protein ; (*GB) gi|37951311|dbj|BAD00043.1| (e_value=2e-123) MAP kinase phosphatase [Nicotiana tabacum];; (*ITAG) Solyc05g013750.2.1 (e_value=4e-99) genomic_reference:SL2.40ch05 gene_region:7063818-7066955 transcript_region:SL2.40ch05:7063818..7066955- go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity phosphatase 4 (AHRD V1 *-*- Q7SZF3_DANRE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00022804g0001.1 protein ; (*GB) gi|224088555|ref|XP_002308472.1| (e_value=2e-65) predicted protein [Populus trichocarpa];; (*SWP) sp|Q923K9|A1CF_RAT (e_value=3e-15) APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1;; (*TAIR) AT3G52660.2 (e_value=2e-54) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:19522598-19524735 FORWARD LENGTH=471;; (*ITAG) Solyc09g009890.2.1 (e_value=9e-95) genomic_reference:SL2.40ch09 gene_region:3372431-3376679 transcript_region:SL2.40ch09:3372431..3376679- go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- B8N3I8_ASPFN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00010126g0002.1 protein NbS00010126g0004.1 protein NbS00014440g0002.1 protein NbS00010272g0001.1 protein NbS00042373g0001.1 protein NbS00001216g0001.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=3e-34) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012936g0004.1 protein NbS00018923g0001.1 protein ; (*ITAG) Solyc05g054630.2.1 (e_value=3e-16) genomic_reference:SL2.40ch05 gene_region:63646653-63652887 transcript_region:SL2.40ch05:63646653..63652887+ go_terms:GO:0003711 functional_description:"Elongator complex protein (AHRD V1 ***- C6H856_AJECH); contains Interpro domain(s) IPR006849 IKI3 "; GO:0003711 NbS00018923g0002.1 protein ; (*GB) gi|225449591|ref|XP_002279262.1| (e_value=0.0) PREDICTED: elongator complex protein 1 [Vitis vinifera];; (*SWP) sp|Q9FNA4|ELP1_ARATH (e_value=3e-172) Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1;; (*TAIR) AT5G13680.1 (e_value=2e-173) | Symbols: ELO2, ABO1 | IKI3 family protein | chr5:4410522-4415471 REVERSE LENGTH=1319;; (*ITAG) Solyc05g054630.2.1 (e_value=0.0) genomic_reference:SL2.40ch05 gene_region:63646653-63652887 transcript_region:SL2.40ch05:63646653..63652887+ go_terms:GO:0003711 functional_description:"Elongator complex protein (AHRD V1 ***- C6H856_AJECH); contains Interpro domain(s) IPR006849 IKI3 "; GO:0003711 NbS00055185g0001.1 protein NbS00043929g0001.1 protein NbS00043929g0002.1 protein NbS00008494g0003.1 protein ; (*ITAG) Solyc01g059760.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004699g0005.1 protein ; (*GB) gi|27529728|dbj|BAC53893.1| (e_value=1e-49) cytochrome P450 [Petunia x hybrida];; (*SWP) sp|O23976|C76B1_HELTU (e_value=2e-35) 7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1;; (*TAIR) AT3G61040.1 (e_value=2e-21) | Symbols: CYP76C7 | cytochrome P450, family 76, subfamily C, polypeptide 7 | chr3:22594074-22596125 REVERSE LENGTH=498;; (*ITAG) Solyc09g098030.2.1 (e_value=4e-51) genomic_reference:SL2.40ch09 gene_region:67217201-67219299 transcript_region:SL2.40ch09:67217201..67219299+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00001671g0002.1 protein ; (*GB) gi|77745458|gb|ABB02628.1| (e_value=3e-104) triose phosphate isomerase cytosolic isoform-like [Solanum tuberosum];; (*SWP) sp|P48495|TPIS_PETHY (e_value=4e-105) Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1;; (*TAIR) AT3G55440.1 (e_value=1e-99) | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254;; (*ITAG) Solyc04g011510.2.1 (e_value=5e-107) genomic_reference:SL2.40ch04 gene_region:3944572-3949105 transcript_region:SL2.40ch04:3944572..3949105+ go_terms:GO:0004807 functional_description:"Triosephosphate isomerase (AHRD V1 **** Q38JI4_SOLTU); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "; GO:0004807 NbS00030901g0001.1 protein ; (*GB) gi|359481646|ref|XP_003632654.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100259609 [Vitis vinifera]; NbS00053391g0001.1 protein ; (*GB) gi|356518651|ref|XP_003527992.1| (e_value=1e-53) PREDICTED: U-box domain-containing protein 43-like [Glycine max];; (*ITAG) Solyc03g082690.2.1 (e_value=1e-87) genomic_reference:SL2.40ch03 gene_region:46158633-46163437 transcript_region:SL2.40ch03:46158633..46163437+ go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein (AHRD V1 *-*- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00007229g0001.1 protein NbS00007229g0105.1 protein NbS00045244g0001.1 protein ; (*GB) gi|147865382|emb|CAN79811.1| (e_value=3e-88) hypothetical protein VITISV_018821 [Vitis vinifera];; (*SWP) sp|Q9LFL5|PP390_ARATH (e_value=2e-69) Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1;; (*TAIR) AT5G16860.1 (e_value=2e-70) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850;; (*ITAG) Solyc03g097850.1.1 (e_value=3e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:53624545-53627076 transcript_region:SL2.40ch03:53624545..53627076+ go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M889_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00001472g0003.1 protein ; (*GB) gi|78191406|gb|ABB29924.1| (e_value=2e-30) ripening regulated protein DDTFR10-like [Solanum tuberosum];; (*SWP) sp|P29545|EF1B_ORYSJ (e_value=1e-30) Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3;; (*TAIR) AT2G18110.1 (e_value=1e-28) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr2:7872636-7873713 FORWARD LENGTH=231;; (*ITAG) Solyc07g016150.2.1 (e_value=5e-33) genomic_reference:SL2.40ch07 gene_region:6357299-6359427 transcript_region:SL2.40ch07:6357299..6359427+ go_terms:GO:0003785 functional_description:"Elongation factor 1-beta (AHRD V1 ***- D7KES3_ARALY); contains Interpro domain(s) IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange "; GO:0003785 NbS00036740g0003.1 protein NbS00038876g0001.1 protein NbS00038876g0002.1 protein NbS00010768g0002.1 protein NbS00010768g0003.1 protein ; (*GB) gi|255587557|ref|XP_002534310.1| (e_value=7e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G65170.1 (e_value=1e-22) | Symbols: | VQ motif-containing protein | chr5:26041218-26042306 FORWARD LENGTH=362;; (*ITAG) Solyc04g055050.1.1 (e_value=1e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:52752735-52754765 transcript_region:SL2.40ch04:52752735..52754765+ functional_description:"VQ motif family protein expressed (AHRD V1 *-*- Q10KE8_ORYSJ); contains Interpro domain(s) IPR008889 VQ "; NbC23313091g0001.1 protein ; (*GB) gi|40287502|gb|AAR83865.1| (e_value=4e-23) elongation factor 1-alpha [Capsicum annuum];; (*SWP) sp|P17786|EF1A_SOLLC (e_value=7e-23) Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G07930.2 (e_value=2e-23) | Symbols: | GTP binding Elongation factor Tu family protein | chr1:2459014-2460458 FORWARD LENGTH=372;; (*ITAG) Solyc06g009960.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:4358595-4360016 transcript_region:SL2.40ch06:4358595..4360016- go_terms:GO:0005525,GO:0005737 functional_description:"Elongation factor 1-alpha (AHRD V1 ***- Q8H9C0_SOLTU); contains Interpro domain(s) IPR004539 Translation elongation factor EF1A, eukaryotic and archaeal "; GO:0005525,GO:0005737 NbS00002583g0001.1 protein NbS00002583g0002.1 protein ; (*GB) gi|357510893|ref|XP_003625735.1| (e_value=2e-19) Aspartic proteinase-like protein [Medicago truncatula];; (*TAIR) AT2G36670.2 (e_value=1e-16) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=507;; (*ITAG) Solyc11g066620.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49476659-49482053 transcript_region:SL2.40ch11:49476659..49482053+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7M1J9_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00002583g0202.1 protein NbS00003832g0102.1 protein NbS00039773g0001.1 protein ; (*GB) gi|224078982|ref|XP_002305706.1| (e_value=2e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56580.1 (e_value=1e-19) | Symbols: SVB | Protein of unknown function, DUF538 | chr1:21198402-21198902 REVERSE LENGTH=166;; (*ITAG) Solyc02g070500.1.1 (e_value=2e-31) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34810672-34811115 transcript_region:SL2.40ch02:34810672..34811115+ go_terms:GO:0005515 functional_description:"Susceptibility homeodomain transcription factor (Fragment) (AHRD V1 ***- Q8SAA7_ORYSA); contains Interpro domain(s) IPR007493 Protein of unknown function DUF538 "; GO:0005515 NbS00031328g0001.1 protein ; (*GB) gi|356532227|ref|XP_003534675.1| (e_value=2e-26) PREDICTED: uncharacterized protein At5g23160-like [Glycine max];; (*SWP) sp|Q9FMY4|Y5316_ARATH (e_value=5e-26) Uncharacterized protein At5g23160 OS=Arabidopsis thaliana GN=At5g23160 PE=2 SV=1;; (*TAIR) AT5G23160.1 (e_value=4e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:7795409-7796310 REVERSE LENGTH=271; NbS00001797g0001.1 protein NbS00033671g0001.1 protein ; (*GB) gi|357118322|ref|XP_003560904.1| (e_value=1e-25) PREDICTED: importin-5 [Brachypodium distachyon];; (*TAIR) AT5G19820.1 (e_value=2e-22) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=6e-25) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00042683g0001.1 protein NbC24034406g0001.1 protein ; (*GB) gi|225441549|ref|XP_002281113.1| (e_value=6e-60) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q75HJ0|RH37_ORYSJ (e_value=4e-58) DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1;; (*TAIR) AT2G42520.1 (e_value=1e-58) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:17705382-17708744 FORWARD LENGTH=633;; (*ITAG) Solyc03g052980.2.1 (e_value=4e-70) genomic_reference:SL2.40ch03 gene_region:19499079-19506399 transcript_region:SL2.40ch03:19499079..19506399- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00014945g0001.1 protein ; (*GB) gi|384383722|gb|AFH88388.1| (e_value=2e-66) alpha-glucan water dikinase [Solanum tuberosum];; (*SWP) sp|Q9AWA5|GWD1_SOLTU (e_value=6e-68) Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2;; (*TAIR) AT1G10760.1 (e_value=3e-59) | Symbols: SEX1, SOP1, SOP, GWD1, GWD | Pyruvate phosphate dikinase, PEP/pyruvate binding domain | chr1:3581210-3590043 REVERSE LENGTH=1399;; (*ITAG) Solyc05g005020.2.1 (e_value=2e-68) genomic_reference:SL2.40ch05 gene_region:32534-50826 transcript_region:SL2.40ch05:32534..50826- go_terms:GO:0050521,GO:0005515 functional_description:"R1 protein alpha-glucan water dikinase (AHRD V1 **** A8I6T5_CHLRE); contains Interpro domain(s) IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding "; GO:0050521,GO:0005515 NbS00019703g0001.1 protein NbS00036063g0003.1 protein NbS00023005g0001.1 protein NbS00030958g0003.1 protein NbS00019756g0001.1 protein NbS00019501g0002.1 protein NbC24680105g0001.1 protein ; (*GB) gi|255568748|ref|XP_002525345.1| (e_value=3e-31) Spotted leaf protein, putative [Ricinus communis];; (*SWP) sp|Q9XIJ5|PUB18_ARATH (e_value=9e-20) U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18 PE=2 SV=1;; (*TAIR) AT1G10560.1 (e_value=7e-21) | Symbols: PUB18, ATPUB18 | plant U-box 18 | chr1:3484613-3486706 FORWARD LENGTH=697;; (*ITAG) Solyc05g005670.1.1 (e_value=1e-57) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:498016-500073 transcript_region:SL2.40ch05:498016..500073- go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 *--- D7LSY5_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00061679g0001.1 protein ; (*GB) gi|21554913|gb|AAM63728.1| (e_value=9e-27) unknown [Arabidopsis thaliana];; (*TAIR) AT5G20790.1 (e_value=7e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7040046-7040627 REVERSE LENGTH=193; NbS00007893g0003.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=7e-12) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00035722g0001.1 protein ; (*ITAG) Solyc03g093090.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47718464-47722698 transcript_region:SL2.40ch03:47718464..47722698+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00002677g0202.1 protein NbS00002677g0205.1 protein NbS00002677g0206.1 protein NbS00001220g0001.1 protein ; (*GB) gi|225439482|ref|XP_002269769.1| (e_value=7e-23) PREDICTED: importin subunit beta-1 [Vitis vinifera];; (*TAIR) AT3G08943.1 (e_value=4e-24) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=1e-33) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00040985g0002.1 protein NbS00061294g0002.1 protein NbS00041820g0001.1 protein NbS00060599g0001.1 protein ; (*GB) gi|225426048|ref|XP_002274812.1| (e_value=2e-59) PREDICTED: probable beta-1,3-galactosyltransferase 11-like [Vitis vinifera];; (*SWP) sp|Q94F27|B3GTB_ARATH (e_value=2e-49) Probable beta-1,3-galactosyltransferase 11 OS=Arabidopsis thaliana GN=B3GALT11 PE=2 SV=1;; (*TAIR) AT5G53340.2 (e_value=1e-50) | Symbols: | Galactosyltransferase family protein | chr5:21641045-21643195 REVERSE LENGTH=337;; (*ITAG) Solyc08g081920.2.1 (e_value=2e-52) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00006311g0001.1 protein NbC24831967g0001.1 protein ; (*GB) gi|255567544|ref|XP_002524751.1| (e_value=2e-22) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SA60|PPR6_ARATH (e_value=7e-24) Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1;; (*TAIR) AT1G03100.1 (e_value=5e-25) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:744026-746407 REVERSE LENGTH=793;; (*ITAG) Solyc04g008410.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012812g0003.1 protein ; (*GB) gi|359494410|ref|XP_002266179.2| (e_value=8e-38) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Vitis vinifera];; (*SWP) sp|Q9FPS9|UBP15_ARATH (e_value=5e-17) Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2;; (*TAIR) AT1G17110.2 (e_value=3e-18) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=928;; (*ITAG) Solyc07g061780.2.1 (e_value=9e-101) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00057133g0001.1 protein NbS00002591g0002.1 protein ; (*GB) gi|255561871|ref|XP_002521944.1| (e_value=8e-32) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|O22969|Y2416_ARATH (e_value=1e-28) Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1;; (*TAIR) AT3G04620.1 (e_value=1e-33) | Symbols: | Alba DNA/RNA-binding protein | chr3:1255660-1256739 REVERSE LENGTH=164;; (*ITAG) Solyc01g097050.2.1 (e_value=2e-55) genomic_reference:SL2.40ch01 gene_region:79780944-79783526 transcript_region:SL2.40ch01:79780944..79783526- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 *-*- D7L2W2_ARALY); contains Interpro domain(s) IPR014560 Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related "; GO:0003676 NbS00007254g0003.1 protein ; (*GB) gi|147810501|emb|CAN60890.1| (e_value=4e-15) hypothetical protein VITISV_011880 [Vitis vinifera]; NbS00045179g0004.1 protein ; (*GB) gi|224126395|ref|XP_002329543.1| (e_value=2e-13) predicted protein [Populus trichocarpa];; (*TAIR) AT4G17680.2 (e_value=4e-11) | Symbols: | SBP (S-ribonuclease binding protein) family protein | chr4:9842903-9843703 REVERSE LENGTH=242;; (*ITAG) Solyc00g024160.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12183146-12184149 transcript_region:SL2.40ch00:12183146..12184149- go_terms:GO:0008270 functional_description:"ATP binding protein (AHRD V1 **-- D7MPZ5_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbC23467339g0001.1 protein ; (*ITAG) Solyc07g007140.2.1 (e_value=2e-21) genomic_reference:SL2.40ch07 gene_region:1889884-1899241 transcript_region:SL2.40ch07:1889884..1899241- go_terms:GO:0004712 functional_description:"Serine/threonine-protein kinase B-raf (AHRD V1 *-** BRAF_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00011920g0003.1 protein NbS00017562g0002.1 protein NbS00013697g0001.1 protein ; (*GB) gi|255561873|ref|XP_002521945.1| (e_value=6e-43) Poly(rC)-binding protein, putative [Ricinus communis];; (*TAIR) AT3G04610.1 (e_value=5e-35) | Symbols: FLK | RNA-binding KH domain-containing protein | chr3:1250762-1254272 REVERSE LENGTH=577;; (*ITAG) Solyc01g097010.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:79734182-79760765 transcript_region:SL2.40ch01:79734182..79760765+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6U2B4_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00023540g0002.1 protein NbS00023095g0002.1 protein NbS00006718g0001.1 protein ; (*GB) gi|316996030|dbj|BAD83551.2| (e_value=3e-116) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=4e-79) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=3e-80) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=2e-117) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00006718g0002.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis]; NbS00004047g0001.1 protein NbS00018564g0001.1 protein NbS00018564g0002.1 protein NbS00028332g0002.1 protein NbC25225475g0001.1 protein ; (*GB) gi|147818033|emb|CAN64889.1| (e_value=4e-28) hypothetical protein VITISV_021080 [Vitis vinifera];; (*TAIR) AT5G59400.2 (e_value=2e-16) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=301;; (*ITAG) Solyc06g076250.2.1 (e_value=6e-42) genomic_reference:SL2.40ch06 gene_region:43763435-43767560 transcript_region:SL2.40ch06:43763435..43767560+ functional_description:"Genomic DNA chromosome 5 BAC clone F2O15 (AHRD V1 **-- Q9LTI9_ARATH)"; NbS00028345g0002.1 protein NbS00028345g0004.1 protein NbS00028345g0006.1 protein NbS00005000g0001.1 protein NbS00007444g0001.1 protein NbS00023090g0002.1 protein NbS00011339g0001.1 protein NbS00006994g0001.1 protein NbS00014829g0002.1 protein NbS00000648g0007.1 protein NbS00000648g0010.1 protein NbS00007196g0003.1 protein NbS00007196g0004.1 protein NbS00007196g0005.1 protein NbS00032847g0001.1 protein NbS00005338g0002.1 protein NbS00027460g0001.1 protein ; (*ITAG) Solyc06g084150.2.1 (e_value=7e-23) genomic_reference:SL2.40ch06 gene_region:45660099-45662380 transcript_region:SL2.40ch06:45660099..45662380- functional_description:"Os07g0175100 protein (Fragment) (AHRD V1 ***- Q0D898_ORYSJ)"; NbS00024729g0001.1 protein NbS00002682g0002.1 protein ; (*GB) gi|359497630|ref|XP_003635591.1| (e_value=5e-52) PREDICTED: uncharacterized protein LOC100854331 [Vitis vinifera];; (*TAIR) AT1G18730.3 (e_value=1e-25) | Symbols: NDF6 | NDH dependent flow 6 | chr1:6460625-6462107 FORWARD LENGTH=174;; (*ITAG) Solyc12g036170.1.1 (e_value=7e-53) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:29752815-29754223 transcript_region:SL2.40ch12:29752815..29754223- functional_description:"Unknown Protein (AHRD V1)"; NbS00027855g0001.1 protein ; (*GB) gi|255550465|ref|XP_002516283.1| (e_value=3e-87) rad7, putative [Ricinus communis];; (*TAIR) AT2G06040.1 (e_value=9e-81) | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). | chr2:2352333-2355419 REVERSE LENGTH=762;; (*ITAG) Solyc08g061650.2.1 (e_value=8e-61) genomic_reference:SL2.40ch08 gene_region:46484175-46497071 transcript_region:SL2.40ch08:46484175..46497071- functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 *-*- B5X1Y2_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00009962g0001.1 protein ; (*GB) gi|294462836|gb|ADE76960.1| (e_value=2e-40) unknown [Picea sitchensis];; (*SWP) sp|Q9SA71|GLPT3_ARATH (e_value=1e-39) Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1;; (*TAIR) AT1G30560.1 (e_value=1e-40) | Symbols: | Major facilitator superfamily protein | chr1:10824761-10826293 FORWARD LENGTH=510;; (*ITAG) Solyc06g034290.2.1 (e_value=2e-46) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00009962g0002.1 protein ; (*GB) gi|372266201|ref|NP_001243213.1| (e_value=2e-32) putative glycerol-3-phosphate transporter 1-like [Glycine max];; (*SWP) sp|Q9SA71|GLPT3_ARATH (e_value=1e-32) Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1;; (*TAIR) AT1G30560.1 (e_value=1e-33) | Symbols: | Major facilitator superfamily protein | chr1:10824761-10826293 FORWARD LENGTH=510;; (*ITAG) Solyc06g034290.2.1 (e_value=8e-39) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00009962g0004.1 protein NbS00008055g0001.1 protein NbS00029233g0002.1 protein NbS00061681g0001.1 protein NbS00005413g0102.1 protein NbC23534481g0001.1 protein ; (*ITAG) Solyc10g047270.1.1 (e_value=3e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:35783789-35806046 transcript_region:SL2.40ch10:35783789..35806046+ go_terms:GO:0009674 functional_description:"Potassium transporter family protein (AHRD V1 **** D7KXB7_ARALY); contains Interpro domain(s) IPR003855 K+ potassium transporter "; GO:0009674 NbS00036282g0001.1 protein ; (*GB) gi|224093782|ref|XP_002309989.1| (e_value=6e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g039970.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00019183g0001.1 protein NbS00052619g0002.1 protein NbS00052619g0005.1 protein NbS00043565g0001.1 protein NbS00004844g0001.1 protein NbS00018111g0001.1 protein NbC24751120g0001.1 protein ; (*GB) gi|224112851|ref|XP_002316309.1| (e_value=3e-103) multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q8LPT1|AB6B_ARATH (e_value=1e-100) ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6 PE=1 SV=2;; (*TAIR) AT2G39480.1 (e_value=8e-102) | Symbols: PGP6 | P-glycoprotein 6 | chr2:16478249-16484827 REVERSE LENGTH=1407;; (*ITAG) Solyc04g010310.2.1 (e_value=7e-113) genomic_reference:SL2.40ch04 gene_region:3631081-3639205 transcript_region:SL2.40ch04:3631081..3639205+ go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *-** YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00035327g0001.1 protein ; (*ITAG) Solyc08g043200.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:30103548-30104252 transcript_region:SL2.40ch08:30103548..30104252+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018913g0102.1 protein NbS00018913g0103.1 protein NbC24109430g0001.1 protein ; (*GB) gi|225437547|ref|XP_002270319.1| (e_value=5e-16) PREDICTED: histidine kinase CKI1-like [Vitis vinifera];; (*ITAG) Solyc12g099720.1.1 (e_value=6e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbC23698138g0001.1 protein ; (*GB) gi|224104403|ref|XP_002313426.1| (e_value=3e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VZI8|FTSHA_ARATH (e_value=6e-29) ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1;; (*TAIR) AT1G07510.1 (e_value=4e-30) | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-2309380 FORWARD LENGTH=813;; (*ITAG) Solyc10g086550.1.1 (e_value=1e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64658970-64670325 transcript_region:SL2.40ch10:64658970..64670325- go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog 3 (AHRD V1 *--- FTSH3_SYNY3); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00039076g0002.1 protein NbS00003781g0003.1 protein NbC25032573g0001.1 protein ; (*GB) gi|4325041|gb|AAD17230.1| (e_value=5e-37) FtsH-like protein Pftf precursor [Nicotiana tabacum];; (*SWP) sp|O80860|FTSH2_ARATH (e_value=2e-32) ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1;; (*TAIR) AT2G30950.1 (e_value=1e-33) | Symbols: VAR2, FTSH2 | FtsH extracellular protease family | chr2:13174692-13177064 FORWARD LENGTH=695;; (*ITAG) Solyc07g055320.2.1 (e_value=2e-35) genomic_reference:SL2.40ch07 gene_region:60717008-60721284 transcript_region:SL2.40ch07:60717008..60721284- go_terms:GO:0004176 functional_description:"ATP-dependent Zn protease cell division protein FtsH homolog (AHRD V1 **** B2XTF7_HETA2); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00007397g0005.1 protein NbS00007397g0008.1 protein NbS00019507g0001.1 protein ; (*GB) gi|357933559|dbj|BAL15046.1| (e_value=6e-32) glutamate receptor 1.1 [Solanum lycopersicum];; (*ITAG) Solyc04g078860.2.1 (e_value=3e-34) genomic_reference:SL2.40ch04 gene_region:61113344-61120190 transcript_region:SL2.40ch04:61113344..61120190+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9MVR4_POPTR); contains Interpro domain(s) IPR015683 Glutamate receptor-related "; GO:0005217 NbS00060018g0002.1 protein ; (*GB) gi|296084034|emb|CBI24422.3| (e_value=2e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MA50|PPR13_ARATH (e_value=4e-16) Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1;; (*TAIR) AT1G05750.1 (e_value=3e-17) | Symbols: PDE247, CLB19 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1721523-1723025 FORWARD LENGTH=500;; (*ITAG) Solyc11g071370.1.1 (e_value=1e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51957107-51958630 transcript_region:SL2.40ch11:51957107..51958630+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00043588g0001.1 protein ; (*GB) gi|147785835|emb|CAN73071.1| (e_value=1e-36) hypothetical protein VITISV_032383 [Vitis vinifera]; NbS00002376g0001.1 protein NbS00017455g0003.1 protein NbS00006055g0002.1 protein NbS00006055g0004.1 protein NbS00007335g0102.1 protein NbC23966915g0001.1 protein ; (*GB) gi|297734185|emb|CBI15432.3| (e_value=7e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G49040.2 (e_value=1e-17) | Symbols: SCD1 | stomatal cytokinesis defective / SCD1 protein (SCD1) | chr1:18142007-18148826 REVERSE LENGTH=909;; (*ITAG) Solyc03g119650.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00050071g0001.1 protein NbS00022522g0002.1 protein NbS00008805g0001.1 protein ; (*GB) gi|169977330|emb|CAQ18912.1| (e_value=1e-51) domains rearranged methyltransferase [Nicotiana sylvestris];; (*ITAG) Solyc04g005250.2.1 (e_value=7e-56) genomic_reference:SL2.40ch04 gene_region:185839-189158 transcript_region:SL2.40ch04:185839..189158- go_terms:GO:0003886,GO:0008170 functional_description:"DNA (Cytosine-5-)-methyltransferase 3 (AHRD V1 *-** B3DGP2_DANRE); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886,GO:0008170 NbS00001623g0005.1 protein NbS00001623g0006.1 protein NbS00018559g0001.1 protein NbS00026015g0001.1 protein NbS00007803g0001.1 protein ; (*GB) gi|224138464|ref|XP_002326609.1| (e_value=1e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WWQ1|ATG3_ARATH (e_value=7e-45) Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=2 SV=2;; (*TAIR) AT5G61500.1 (e_value=6e-46) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313;; (*ITAG) Solyc06g034160.2.1 (e_value=1e-45) genomic_reference:SL2.40ch06 gene_region:20414151-20423117 transcript_region:SL2.40ch06:20414151..20423117+ go_terms:GO:0019776 functional_description:"Autophagy-related protein 3 (AHRD V1 ***- D7MV26_ARALY); contains Interpro domain(s) IPR007134 Autophagy-related protein 3, N-terminal "; GO:0019776 NbC24672974g0001.1 protein ; (*GB) gi|224134000|ref|XP_002327731.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT3G01160.1 (e_value=1e-15) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | chr3:54655-57449 REVERSE LENGTH=713;; (*ITAG) Solyc02g083470.2.1 (e_value=4e-36) genomic_reference:SL2.40ch02 gene_region:41440829-41445430 transcript_region:SL2.40ch02:41440829..41445430- functional_description:"Pre-rRNA-processing protein ESF1 (AHRD V1 *-*- C5FM19_NANOT)"; NbS00031696g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=7e-47) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=8e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00031696g0003.1 protein NbS00024490g0002.1 protein NbS00024490g0004.1 protein NbC23180049g0001.1 protein ; (*GB) gi|242072484|ref|XP_002446178.1| (e_value=7e-21) hypothetical protein SORBIDRAFT_06g003090 [Sorghum bicolor];; (*SWP) sp|F4I1L3|ACC2_ARATH (e_value=7e-22) Acetyl-CoA carboxylase 2 OS=Arabidopsis thaliana GN=ACC2 PE=2 SV=1;; (*TAIR) AT1G36180.2 (e_value=3e-23) | Symbols: ACC2 | acetyl-CoA carboxylase 2 | chr1:13546047-13547853 FORWARD LENGTH=427;; (*ITAG) Solyc12g056940.1.1 (e_value=4e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00043563g0001.1 protein ; (*ITAG) Solyc09g009780.2.1 (e_value=4e-13) genomic_reference:SL2.40ch09 gene_region:3261256-3263382 transcript_region:SL2.40ch09:3261256..3263382+ go_terms:GO:0004343 functional_description:"Glucosamine 6-phosphate N-acetyltransferase (AHRD V1 **** B6TIB6_MAIZE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0004343 NbC23986411g0001.1 protein ; (*GB) gi|225346673|gb|ACN86358.1| (e_value=5e-55) GID1-3 [Gossypium hirsutum];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=4e-52) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=3e-53) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=2e-59) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00060459g0001.1 protein NbS00001791g0001.1 protein NbS00021127g0006.1 protein NbS00013358g0001.1 protein ; (*SWP) sp|Q9SP32|DCL1_ARATH (e_value=9e-13) Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2;; (*TAIR) AT1G01040.1 (e_value=7e-14) | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1909;; (*ITAG) Solyc10g005130.2.1 (e_value=2e-34) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00012179g0001.1 protein ; (*GB) gi|359476777|ref|XP_002278837.2| (e_value=3e-34) PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera];; (*SWP) sp|Q93Y38|GDT13_ARATH (e_value=3e-28) GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1;; (*TAIR) AT5G36290.2 (e_value=3e-29) | Symbols: | Uncharacterized protein family (UPF0016) | chr5:14302977-14304972 FORWARD LENGTH=293;; (*ITAG) Solyc11g008890.1.1 (e_value=1e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:3059196-3063574 transcript_region:SL2.40ch11:3059196..3063574- go_terms:GO:0016020 functional_description:"Predicted membrane protein (Fragment) (AHRD V1 **-- B9HJ03_POPTR); contains Interpro domain(s) IPR001727 Uncharacterised protein family UPF0016 "; GO:0016020 NbS00012179g0002.1 protein NbS00034471g0002.1 protein NbS00000745g0002.1 protein NbS00018195g0001.1 protein NbS00014971g0001.1 protein ; (*GB) gi|255586355|ref|XP_002533827.1| (e_value=7e-65) Regulatory-associated protein of mTOR, putative [Ricinus communis];; (*SWP) sp|Q93YQ1|RTOR1_ARATH (e_value=6e-65) Regulatory-associated protein of TOR 1 OS=Arabidopsis thaliana GN=RAPTOR1 PE=1 SV=1;; (*TAIR) AT3G08850.1 (e_value=4e-66) | Symbols: RAPTOR1B, ATRAPTOR1B, RAPTOR1 | HEAT repeat ;WD domain, G-beta repeat protein protein | chr3:2686978-2694911 REVERSE LENGTH=1344;; (*ITAG) Solyc09g014780.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:6917876-6935366 transcript_region:SL2.40ch09:6917876..6935366+ go_terms:GO:0032403 functional_description:"WD-repeat protein mip1 (AHRD V1 *--- C5FLG0_NANOT); contains Interpro domain(s) IPR004083 Regulatory associated protein of TOR "; GO:0032403 NbC25868771g0001.1 protein ; (*GB) gi|283099385|gb|ADB08056.1| (e_value=2e-51) microtubule-associated protein [Nicotiana benthamiana];; (*TAIR) AT5G57210.1 (e_value=2e-26) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:23181088-23183705 REVERSE LENGTH=737;; (*ITAG) Solyc07g008840.2.1 (e_value=2e-46) genomic_reference:SL2.40ch07 gene_region:3803764-3808890 transcript_region:SL2.40ch07:3803764..3808890- go_terms:GO:0005622 functional_description:"TBC1 domain family member 5 (AHRD V1 *--- B9A6K1_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00011140g0001.1 protein NbS00061591g0001.1 protein NbS00011551g0001.1 protein ; (*GB) gi|255550217|ref|XP_002516159.1| (e_value=1e-47) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*TAIR) AT2G26280.1 (e_value=1e-39) | Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567;; (*ITAG) Solyc08g061320.2.1 (e_value=2e-98) genomic_reference:SL2.40ch08 gene_region:45711690-45716597 transcript_region:SL2.40ch08:45711690..45716597- go_terms:GO:0005515 functional_description:"Smr domain containing protein (AHRD V1 ***- B6SWQ7_MAIZE); contains Interpro domain(s) IPR002625 Smr protein/MutS2 C-terminal "; GO:0005515 NbS00035831g0003.1 protein ; (*GB) gi|145308227|gb|ABP57378.1| (e_value=0.0) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=1e-140) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT5G39500.1 (e_value=4e-149) | Symbols: GNL1, ERMO1 | GNOM-like 1 | chr5:15815274-15819910 FORWARD LENGTH=1443;; (*ITAG) Solyc02g067010.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31828637-31834655 transcript_region:SL2.40ch02:31828637..31834655- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00035831g0004.1 protein ; (*GB) gi|145308227|gb|ABP57378.1| (e_value=2e-57) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=2e-52) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=2e-53) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc02g067010.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:31828637-31834655 transcript_region:SL2.40ch02:31828637..31834655- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00028820g0002.1 protein NbS00009110g0001.1 protein NbS00005345g0102.1 protein NbS00017051g0002.1 protein NbS00013424g0003.1 protein NbS00008416g0002.1 protein NbS00001469g0003.1 protein NbC23265194g0001.1 protein ; (*GB) gi|147778742|emb|CAN73700.1| (e_value=4e-30) hypothetical protein VITISV_013112 [Vitis vinifera];; (*SWP) sp|Q69P51|CESA9_ORYSJ (e_value=1e-18) Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1;; (*TAIR) AT5G17420.1 (e_value=2e-17) | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026;; (*ITAG) Solyc07g005840.2.1 (e_value=1e-29) genomic_reference:SL2.40ch07 gene_region:667374-673097 transcript_region:SL2.40ch07:667374..673097+ go_terms:GO:0016759 functional_description:"Cellulose synthase 3 (AHRD V1 **** Q2IB41_EUCGR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00002558g0002.1 protein NbS00015441g0002.1 protein NbS00015441g0003.1 protein NbS00025698g0001.1 protein NbS00058297g0001.1 protein ; (*GB) gi|147853458|emb|CAN80201.1| (e_value=3e-17) hypothetical protein VITISV_038543 [Vitis vinifera]; NbS00030043g0002.1 protein NbS00030043g0003.1 protein NbS00040381g0002.1 protein NbS00056663g0001.1 protein NbS00053038g0003.1 protein NbS00016203g0002.1 protein NbS00036362g0003.1 protein NbC23327157g0001.1 protein ; (*GB) gi|3108161|gb|AAC61852.1| (e_value=6e-28) putative monosaccharide transporter 1 [Petunia x hybrida];; (*SWP) sp|Q9SX48|STP9_ARATH (e_value=7e-27) Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1;; (*TAIR) AT1G50310.1 (e_value=5e-28) | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr1:18635984-18638110 FORWARD LENGTH=517;; (*ITAG) Solyc01g008240.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:2369175-2373387 transcript_region:SL2.40ch01:2369175..2373387- go_terms:GO:0016020,GO:0016021 functional_description:"Solute carrier family 2, facilitated glucose transporter member 3 (AHRD V1 ***- GTR3_BOVIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00034767g0001.1 protein NbS00020413g0002.1 protein NbS00038511g0001.1 protein NbS00008502g0001.1 protein NbS00027375g0001.1 protein NbS00025119g0003.1 protein ; (*GB) gi|225431392|ref|XP_002272192.1| (e_value=9e-85) PREDICTED: uncharacterized protein LOC100259153 [Vitis vinifera];; (*TAIR) AT5G09840.1 (e_value=5e-33) | Symbols: | Putative endonuclease or glycosyl hydrolase | chr5:3059027-3061970 FORWARD LENGTH=924;; (*ITAG) Solyc11g005440.1.1 (e_value=1e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00027230g0002.1 protein NbS00026018g0002.1 protein NbS00000992g0001.1 protein NbS00033531g0001.1 protein NbS00033531g0003.1 protein ; (*GB) gi|147769550|emb|CAN61405.1| (e_value=3e-101) hypothetical protein VITISV_014259 [Vitis vinifera];; (*SWP) sp|Q8GUU3|CPS3B_ARATH (e_value=1e-61) Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2;; (*TAIR) AT2G01730.1 (e_value=1e-62) | Symbols: ATCPSF73-II, EDA26, CPSF73-II | cleavage and polyadenylation specificity factor 73 kDa subunit-II | chr2:320597-323845 FORWARD LENGTH=613;; (*ITAG) Solyc04g008030.1.1 (e_value=1e-144) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1682464-1697247 transcript_region:SL2.40ch04:1682464..1697247- go_terms:GO:0005515 functional_description:"Cleavage and polyadenylation specificity factor subunit 3 (AHRD V1 **-- B0WXD2_CULQU); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0005515 NbS00001162g0005.1 protein ; (*ITAG) Solyc06g063010.2.1 (e_value=7e-34) genomic_reference:SL2.40ch06 gene_region:36164201-36174916 transcript_region:SL2.40ch06:36164201..36174916+ functional_description:"At1g72390-like protein (Fragment) (AHRD V1 *-*- C0JD42_9BRAS)"; NbS00039145g0001.1 protein ; (*ITAG) Solyc10g012180.1.1 (e_value=5e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:4560322-4560825 transcript_region:SL2.40ch10:4560322..4560825- go_terms:GO:0005634 functional_description:"Agamous-like MADS-box protein AGL62 (AHRD V1 *-*- AGL62_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbC25122200g0001.1 protein ; (*GB) gi|297740436|emb|CBI30618.3| (e_value=1e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G46070.1 (e_value=9e-16) | Symbols: | Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082;; (*ITAG) Solyc02g077600.2.1 (e_value=4e-31) genomic_reference:SL2.40ch02 gene_region:37063720-37072429 transcript_region:SL2.40ch02:37063720..37072429+ go_terms:GO:0005525 functional_description:"Guanylate-binding protein 10 (AHRD V1 *-*- Q000W5_MOUSE); contains Interpro domain(s) IPR015894 Guanylate-binding protein, N-terminal "; GO:0005525 NbS00008570g0002.1 protein NbS00004242g0103.1 protein NbS00004242g0104.1 protein NbS00011253g0001.1 protein NbS00015528g0001.1 protein NbS00015528g0003.1 protein NbS00005477g0103.1 protein NbS00012920g0001.1 protein NbS00030586g0001.1 protein NbS00026858g0002.1 protein NbS00049342g0002.1 protein ; (*GB) gi|356547867|ref|XP_003542326.1| (e_value=3e-38) PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Glycine max];; (*SWP) sp|Q42699|METE_CATRO (e_value=2e-38) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1;; (*TAIR) AT5G17920.2 (e_value=1e-37) | Symbols: ATCIMS | Cobalamin-independent synthase family protein | chr5:5935771-5939195 FORWARD LENGTH=765;; (*ITAG) Solyc01g009180.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:3229107-3234908 transcript_region:SL2.40ch01:3229107..3234908+ go_terms:GO:0008705 functional_description:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (AHRD V1 ***- B6UF55_MAIZE); contains Interpro domain(s) IPR006276 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase "; GO:0008705 NbS00046011g0001.1 protein ; (*ITAG) Solyc08g067650.1.1 (e_value=4e-20) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:53861969-53862439 transcript_region:SL2.40ch08:53861969..53862439- functional_description:"Unknown Protein (AHRD V1)"; NbS00009142g0001.1 protein NbS00016661g0004.1 protein ; (*GB) gi|225468805|ref|XP_002263365.1| (e_value=3e-31) PREDICTED: GEM-like protein 5 [Vitis vinifera];; (*SWP) sp|Q9LYV6|GEML5_ARATH (e_value=1e-26) GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1;; (*TAIR) AT5G13200.1 (e_value=1e-27) | Symbols: | GRAM domain family protein | chr5:4207081-4208079 FORWARD LENGTH=272;; (*ITAG) Solyc08g078510.2.1 (e_value=3e-40) genomic_reference:SL2.40ch08 gene_region:59454948-59456978 transcript_region:SL2.40ch08:59454948..59456978- functional_description:"GRAM-containing/ABA-responsive protein (Fragment) (AHRD V1 *--- C6FBP1_PSEMZ); contains Interpro domain(s) IPR004182 GRAM "; NbS00019863g0001.1 protein ; (*GB) gi|115455697|ref|NP_001051449.1| (e_value=4e-23) Os03g0780400 [Oryza sativa Japonica Group];; (*SWP) sp|Q9AY76|ADF2_ORYSJ (e_value=1e-24) Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1;; (*TAIR) AT2G31200.1 (e_value=4e-21) | Symbols: ADF6, ATADF6 | actin depolymerizing factor 6 | chr2:13294171-13294948 FORWARD LENGTH=146;; (*ITAG) Solyc09g072590.2.1 (e_value=8e-29) genomic_reference:SL2.40ch09 gene_region:60613153-60615233 transcript_region:SL2.40ch09:60613153..60615233+ go_terms:GO:0051015 functional_description:"Actin-depolymerizing factor 6 (AHRD V1 **** D6BR51_9ROSI); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00028490g0001.1 protein ; (*GB) gi|357459283|ref|XP_003599922.1| (e_value=2e-19) hypothetical protein MTR_3g048980 [Medicago truncatula]; NbS00012876g0004.1 protein NbS00012876g0005.1 protein ; (*GB) gi|357487581|ref|XP_003614078.1| (e_value=1e-18) HGWP repeat containing protein-like protein [Medicago truncatula]; NbS00040632g0001.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=6e-13) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00047822g0003.1 protein NbS00055921g0001.1 protein NbS00055921g0002.1 protein NbS00014372g0003.1 protein NbS00047146g0001.1 protein ; (*GB) gi|225455336|ref|XP_002276600.1| (e_value=4e-109) PREDICTED: importin subunit beta-1-like [Vitis vinifera];; (*SWP) sp|P70168|IMB1_MOUSE (e_value=2e-28) Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2;; (*TAIR) AT5G53480.1 (e_value=1e-105) | Symbols: | ARM repeat superfamily protein | chr5:21714016-21716709 FORWARD LENGTH=870;; (*ITAG) Solyc03g082940.2.1 (e_value=5e-113) genomic_reference:SL2.40ch03 gene_region:46351733-46356189 transcript_region:SL2.40ch03:46351733..46356189+ go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00010975g0003.1 protein ; (*GB) gi|255539813|ref|XP_002510971.1| (e_value=3e-24) structural maintenance of chromosomes 6 smc6, putative [Ricinus communis];; (*TAIR) AT5G61460.1 (e_value=4e-25) | Symbols: MIM, ATRAD18, SMC6B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24714551-24721841 REVERSE LENGTH=1057;; (*ITAG) Solyc05g051680.2.1 (e_value=7e-29) genomic_reference:SL2.40ch05 gene_region:61207858-61233676 transcript_region:SL2.40ch05:61207858..61233676+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes family protein (AHRD V1 ***- D7M0L2_ARALY); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00014115g0001.1 protein ; (*GB) gi|77416921|gb|ABA81856.1| (e_value=4e-16) unknown [Solanum tuberosum];; (*SWP) sp|P49210|RL9_ORYSJ (e_value=2e-16) 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3;; (*TAIR) AT1G33140.1 (e_value=8e-17) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc12g096700.1.1 (e_value=8e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63855944-63857858 transcript_region:SL2.40ch12:63855944..63857858- go_terms:GO:0005840 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR002359 Ribosomal protein L6, conserved site-2 "; GO:0005840 NbS00001776g0002.1 protein NbS00001776g0003.1 protein NbS00001776g0005.1 protein NbS00020151g0006.1 protein NbS00020151g0010.1 protein NbS00025765g0005.1 protein NbS00000986g0005.1 protein NbS00010452g0011.1 protein NbS00010452g0015.1 protein NbS00047243g0001.1 protein NbS00029360g0007.1 protein NbS00026079g0001.1 protein NbS00026079g0002.1 protein NbS00000192g0011.1 protein NbS00000192g0012.1 protein NbS00000192g0006.1 protein NbS00040589g0006.1 protein NbS00006891g0011.1 protein NbS00006891g0007.1 protein NbS00019186g0002.1 protein NbS00033943g0008.1 protein NbS00000606g0009.1 protein NbS00053290g0001.1 protein NbS00011099g0005.1 protein NbS00019145g0005.1 protein NbS00019145g0008.1 protein NbS00001001g0013.1 protein NbS00026455g0002.1 protein NbS00026455g0004.1 protein NbS00021634g0003.1 protein NbS00022542g0010.1 protein NbS00025897g0003.1 protein NbS00024386g0006.1 protein ; (*GB) gi|147866727|emb|CAN82653.1| (e_value=3e-24) hypothetical protein VITISV_038833 [Vitis vinifera];; (*ITAG) Solyc08g029200.2.1 (e_value=2e-37) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00016260g0001.1 protein NbS00007493g0015.1 protein NbS00042633g0001.1 protein ; (*GB) gi|296082660|emb|CBI21665.3| (e_value=4e-17) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g005460.1.1 (e_value=6e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:374639-378429 transcript_region:SL2.40ch11:374639..378429+ go_terms:GO:0008565 functional_description:"VHS domain-containing protein (AHRD V1 **-- D7MPR1_ARALY); contains Interpro domain(s) IPR004152 GAT "; GO:0008565 NbS00031072g0001.1 protein NbS00055150g0001.1 protein NbS00055150g0002.1 protein NbS00049336g0004.1 protein NbS00035591g0005.1 protein NbS00000622g0011.1 protein NbS00000622g0013.1 protein NbS00038773g0002.1 protein NbS00002271g0003.1 protein NbS00002271g0004.1 protein NbS00002271g0005.1 protein NbS00002271g0105.1 protein NbS00000030g0005.1 protein NbS00000030g0006.1 protein ; (*ITAG) Solyc07g023940.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00000030g0008.1 protein NbS00000030g0009.1 protein NbS00015063g0003.1 protein ; (*GB) gi|356575054|ref|XP_003555657.1| (e_value=3e-16) PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit A-like [Glycine max];; (*TAIR) AT3G45100.2 (e_value=1e-18) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=8e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00019746g0002.1 protein NbS00019746g0004.1 protein NbS00045366g0007.1 protein ; (*GB) gi|297734507|emb|CBI15754.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G33550.1 (e_value=5e-14) | Symbols: | Homeodomain-like superfamily protein | chr2:14210180-14211487 REVERSE LENGTH=314;; (*ITAG) Solyc03g118230.1.1 (e_value=3e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:61212267-61213419 transcript_region:SL2.40ch03:61212267..61213419+ go_terms:GO:0003700 functional_description:"Sh4 homologue protein (AHRD V1 *-*- B6ZKH4_ECHCG); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003700 NbC24759593g0001.1 protein ; (*GB) gi|225449647|ref|XP_002262699.1| (e_value=3e-29) PREDICTED: bark storage protein A [Vitis vinifera];; (*TAIR) AT4G24350.2 (e_value=3e-26) | Symbols: | Phosphorylase superfamily protein | chr4:12610060-12611328 FORWARD LENGTH=242;; (*ITAG) Solyc11g007730.1.1 (e_value=3e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1965559-1968416 transcript_region:SL2.40ch11:1965559..1968416- go_terms:GO:0009116 functional_description:"MTA/SAH nucleosidase / phosphatase (AHRD V1 *-*- C3G449_BACTU); contains Interpro domain(s) IPR018017 Nucleoside phosphorylase, family 1 "; GO:0009116 NbS00038760g0003.1 protein NbS00047909g0007.1 protein NbS00013271g0004.1 protein ; (*GB) gi|356499785|ref|XP_003518717.1| (e_value=2e-23) PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Glycine max];; (*SWP) sp|O22899|DHX15_ARATH (e_value=3e-20) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1;; (*TAIR) AT3G62310.1 (e_value=2e-25) | Symbols: | RNA helicase family protein | chr3:23057516-23060561 REVERSE LENGTH=726;; (*ITAG) Solyc01g079250.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:70850920-70856753 transcript_region:SL2.40ch01:70850920..70856753- go_terms:GO:0004004 functional_description:"mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00003995g0008.1 protein NbS00029554g0007.1 protein NbS00029554g0009.1 protein NbS00010042g0005.1 protein ; (*GB) gi|147800946|emb|CAN75565.1| (e_value=2e-17) hypothetical protein VITISV_032583 [Vitis vinifera];; (*TAIR) AT2G39190.2 (e_value=1e-15) | Symbols: ATATH8 | Protein kinase superfamily protein | chr2:16350140-16355745 FORWARD LENGTH=814;; (*ITAG) Solyc04g049380.2.1 (e_value=4e-45) genomic_reference:SL2.40ch04 gene_region:40914182-40935245 transcript_region:SL2.40ch04:40914182..40935245+ go_terms:GO:0005215 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_XENLA); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0005215 NbS00035815g0006.1 protein NbS00001903g0009.1 protein NbS00007356g0008.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=4e-20) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*ITAG) Solyc12g038770.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:36350447-36351295 transcript_region:SL2.40ch12:36350447..36351295- functional_description:"N-6 Adenine-specific DNA methylase (AHRD V1 *-*- Q1STQ1_MEDTR)"; NbS00007356g0009.1 protein NbS00026093g0001.1 protein ; (*GB) gi|255581500|ref|XP_002531556.1| (e_value=8e-16) Hsp70-binding protein, putative [Ricinus communis];; (*TAIR) AT3G09350.3 (e_value=2e-16) | Symbols: Fes1A | Fes1A | chr3:2871710-2873109 FORWARD LENGTH=327;; (*ITAG) Solyc09g011030.2.1 (e_value=3e-20) genomic_reference:SL2.40ch09 gene_region:4368272-4373182 transcript_region:SL2.40ch09:4368272..4373182- go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- C8V0S6_EMENI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00006972g0004.1 protein NbS00023592g0005.1 protein NbS00023592g0007.1 protein NbS00023592g0008.1 protein NbS00038810g0007.1 protein ; (*GB) gi|505146|dbj|BAA06538.1| (e_value=1e-15) protein-serine/threonine kinase [Nicotiana tabacum];; (*ITAG) Solyc02g089290.2.1 (e_value=6e-17) genomic_reference:SL2.40ch02 gene_region:45733900-45737882 transcript_region:SL2.40ch02:45733900..45737882- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / kinase/ protein serine / threonine kinase (AHRD V1 **** C5DB47_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00018155g0016.1 protein NbS00022963g0008.1 protein NbS00022963g0009.1 protein NbS00058127g0005.1 protein NbS00021904g0004.1 protein NbS00023528g0002.1 protein NbS00029043g0002.1 protein NbS00050774g0002.1 protein ; (*GB) gi|255546473|ref|XP_002514296.1| (e_value=4e-23) site-1 protease, putative [Ricinus communis];; (*TAIR) AT5G19660.1 (e_value=8e-25) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=4e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00034024g0003.1 protein NbS00034024g0103.1 protein NbS00045697g0002.1 protein NbS00006834g0001.1 protein NbS00011819g0106.1 protein NbS00016248g0005.1 protein NbS00016248g0007.1 protein NbS00048419g0004.1 protein NbS00048419g0006.1 protein NbS00028862g0004.1 protein NbS00009420g0004.1 protein NbS00040370g0001.1 protein ; (*GB) gi|359491076|ref|XP_003634215.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100264568 isoform 2 [Vitis vinifera];; (*TAIR) AT5G63460.4 (e_value=4e-28) | Symbols: | SAP domain-containing protein | chr5:25413605-25415399 REVERSE LENGTH=174;; (*ITAG) Solyc03g111270.2.1 (e_value=8e-58) genomic_reference:SL2.40ch03 gene_region:55935333-55940921 transcript_region:SL2.40ch03:55935333..55940921+ go_terms:GO:0003676 functional_description:"DNA binding protein (AHRD V1 ***- B6T3K5_MAIZE); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; GO:0003676 NbS00045908g0002.1 protein NbS00005013g0002.1 protein NbS00000358g0005.1 protein NbS00034205g0005.1 protein NbS00003971g0009.1 protein ; (*GB) gi|224115550|ref|XP_002317063.1| (e_value=2e-26) predicted protein [Populus trichocarpa];; (*ITAG) Solyc02g069550.1.1 (e_value=8e-60) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:33979113-33984984 transcript_region:SL2.40ch02:33979113..33984984- functional_description:"Prune homolog 2 (AHRD V1 *-*- D6RTK6_HUMAN)"; NbS00004740g0015.1 protein NbS00004740g0017.1 protein NbS00004740g0007.1 protein NbS00023717g0006.1 protein NbS00000717g0002.1 protein NbS00038662g0002.1 protein NbC23930535g0001.1 protein ; (*GB) gi|302142083|emb|CBI19286.3| (e_value=1e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G58250.1 (e_value=3e-25) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=3e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00031687g0004.1 protein NbC26322598g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00027102g0002.1 protein NbS00021494g0006.1 protein NbS00014597g0005.1 protein ; (*GB) gi|110736538|dbj|BAF00236.1| (e_value=1e-16) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT3G08943.1 (e_value=6e-19) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00001395g0011.1 protein NbS00042011g0001.1 protein ; (*GB) gi|224145545|ref|XP_002325680.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|O64477|Y2913_ARATH (e_value=2e-17) G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1;; (*TAIR) AT2G19130.1 (e_value=1e-18) | Symbols: | S-locus lectin protein kinase family protein | chr2:8293789-8296275 FORWARD LENGTH=828;; (*ITAG) Solyc07g053220.1.1 (e_value=7e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58990846-58993308 transcript_region:SL2.40ch07:58990846..58993308+ go_terms:GO:0048544,GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q9LLN5_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0048544,GO:0005529,GO:0006468 NbS00008465g0005.1 protein NbC25281249g0001.1 protein ; (*GB) gi|147771522|emb|CAN75692.1| (e_value=5e-29) hypothetical protein VITISV_038533 [Vitis vinifera];; (*SWP) sp|Q8RY60|Y1733_ARATH (e_value=3e-26) DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1;; (*TAIR) AT1G47330.1 (e_value=2e-27) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:17351149-17353739 FORWARD LENGTH=527;; (*ITAG) Solyc04g080370.2.1 (e_value=5e-32) genomic_reference:SL2.40ch04 gene_region:62165596-62171981 transcript_region:SL2.40ch04:62165596..62171981- go_terms:GO:0005515 functional_description:"Cbs domain containing protein expressed (Fragment) (AHRD V1 *--- A6N095_ORYSI); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00024087g0008.1 protein NbS00024087g0009.1 protein NbS00001598g0003.1 protein NbS00030810g0006.1 protein NbS00005789g0011.1 protein NbS00005789g0008.1 protein NbC25168558g0001.1 protein ; (*GB) gi|147778212|emb|CAN76479.1| (e_value=2e-35) hypothetical protein VITISV_028175 [Vitis vinifera];; (*SWP) sp|Q8GZA6|PP113_ARATH (e_value=6e-25) Pentatricopeptide repeat-containing protein At1g71210 OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1;; (*TAIR) AT1G71210.1 (e_value=5e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26838850-26841489 REVERSE LENGTH=879;; (*ITAG) Solyc07g042030.1.1 (e_value=1e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52221117-52223807 transcript_region:SL2.40ch07:52221117..52223807- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00041428g0004.1 protein NbS00032428g0004.1 protein NbS00000825g0005.1 protein NbS00000825g0007.1 protein ; (*ITAG) Solyc06g008840.2.1 (e_value=2e-20) genomic_reference:SL2.40ch06 gene_region:2790006-2794520 transcript_region:SL2.40ch06:2790006..2794520+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00033228g0002.1 protein NbS00054616g0002.1 protein NbS00000129g0002.1 protein NbS00008916g0014.1 protein NbS00051692g0003.1 protein NbS00036525g0002.1 protein NbS00033991g0002.1 protein NbS00001815g0005.1 protein NbS00001195g0002.1 protein NbS00003202g0003.1 protein NbS00035496g0002.1 protein NbS00035496g0004.1 protein NbS00006338g0104.1 protein NbS00006338g0317.1 protein NbS00006338g0309.1 protein NbS00006850g0007.1 protein NbS00000260g0015.1 protein ; (*GB) gi|296086269|emb|CBI31710.3| (e_value=7e-60) unnamed protein product [Vitis vinifera];; (*SWP) sp|O80647|PP195_ARATH (e_value=8e-42) Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=2 SV=1;; (*TAIR) AT2G39620.1 (e_value=6e-43) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:16518968-16521478 REVERSE LENGTH=836;; (*ITAG) Solyc04g016540.1.1 (e_value=2e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000260g0010.1 protein ; (*GB) gi|302143176|emb|CBI20471.3| (e_value=3e-23) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FIU7|BGL41_ARATH (e_value=7e-19) Putative beta-glucosidase 41 OS=Arabidopsis thaliana GN=BGLU41 PE=3 SV=2;; (*TAIR) AT5G54570.1 (e_value=6e-20) | Symbols: BGLU41 | beta glucosidase 41 | chr5:22167636-22170235 REVERSE LENGTH=535;; (*ITAG) Solyc07g063880.2.1 (e_value=2e-31) genomic_reference:SL2.40ch07 gene_region:63455926-63459903 transcript_region:SL2.40ch07:63455926..63459903- go_terms:GO:0017134 functional_description:"Beta-glucosidase (AHRD V1 ***- D3YJ59_VITVI); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0017134 NbS00003423g0011.1 protein NbS00003423g0008.1 protein ; (*ITAG) Solyc05g052210.2.1 (e_value=4e-14) genomic_reference:SL2.40ch05 gene_region:61637100-61640159 transcript_region:SL2.40ch05:61637100..61640159- functional_description:"Unknown Protein (AHRD V1)"; NbS00026917g0006.1 protein NbS00026917g0007.1 protein NbS00026917g0008.1 protein NbS00018507g0013.1 protein NbS00043433g0007.1 protein NbS00024702g0004.1 protein NbS00017842g0004.1 protein ; (*GB) gi|225456274|ref|XP_002283539.1| (e_value=3e-79) PREDICTED: argininosuccinate synthase, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9SZX3|ASSY_ARATH (e_value=3e-69) Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3;; (*TAIR) AT4G24830.2 (e_value=1e-70) | Symbols: | arginosuccinate synthase family | chr4:12793085-12795857 REVERSE LENGTH=450;; (*ITAG) Solyc05g012270.2.1 (e_value=2e-119) genomic_reference:SL2.40ch05 gene_region:5557467-5563630 transcript_region:SL2.40ch05:5557467..5563630+ go_terms:GO:0004055 functional_description:"Argininosuccinate synthase (AHRD V1 **** B9S599_RICCO); contains Interpro domain(s) IPR001518 Argininosuccinate synthase "; GO:0004055 NbS00035152g0013.1 protein NbC25558951g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00028897g0004.1 protein NbS00034765g0001.1 protein NbS00000413g0002.1 protein NbS00024373g0004.1 protein ; (*GB) gi|302142305|emb|CBI19508.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G42930.1 (e_value=2e-21) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:17210738-17214152 REVERSE LENGTH=467;; (*ITAG) Solyc12g088800.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62471287-62476348 transcript_region:SL2.40ch12:62471287..62476348+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00000689g0005.1 protein NbS00011813g0005.1 protein NbS00011813g0007.1 protein NbS00020611g0008.1 protein NbS00000615g0104.1 protein NbS00000615g0105.1 protein NbS00000615g0106.1 protein NbS00018772g0003.1 protein NbS00033933g0004.1 protein ; (*GB) gi|377656440|pdb|3UYI|A (e_value=2e-13) Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of A Novel Akr Subfamily With Unique Conformational Changes During Nadph Binding;; (*SWP) sp|Q3L181|PERR_RAUSE (e_value=5e-15) Perakine reductase OS=Rauvolfia serpentina GN=PR PE=1 SV=1;; (*ITAG) Solyc01g097390.2.1 (e_value=6e-26) genomic_reference:SL2.40ch01 gene_region:80028719-80032895 transcript_region:SL2.40ch01:80028719..80032895+ go_terms:GO:0006468,GO:0055114 functional_description:"Aldo/keto reductase family protein (AHRD V1 ***- D7KWQ9_ARALY); contains Interpro domain(s) IPR001395 Aldo/keto reductase "; GO:0006468,GO:0055114 NbS00033933g0005.1 protein NbS00033538g0003.1 protein NbS00033538g0006.1 protein NbS00049348g0002.1 protein NbS00049348g0003.1 protein NbS00056538g0004.1 protein NbS00003939g0013.1 protein NbS00003939g0010.1 protein NbS00011703g0003.1 protein NbS00045752g0001.1 protein NbS00047568g0003.1 protein NbS00005362g0002.1 protein NbS00006701g0002.1 protein NbS00056840g0006.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=6e-12) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc03g093090.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47718464-47722698 transcript_region:SL2.40ch03:47718464..47722698+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00030294g0002.1 protein NbS00030294g0003.1 protein NbS00014139g0004.1 protein ; (*GB) gi|147853458|emb|CAN80201.1| (e_value=3e-17) hypothetical protein VITISV_038543 [Vitis vinifera]; NbS00060177g0001.1 protein ; (*GB) gi|225466163|ref|XP_002263755.1| (e_value=3e-36) PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera];; (*SWP) sp|Q9SJG6|PP200_ARATH (e_value=5e-20) Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1;; (*TAIR) AT2G42920.1 (e_value=4e-21) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:17858705-17860384 FORWARD LENGTH=559;; (*ITAG) Solyc12g096510.1.1 (e_value=3e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63740438-63742318 transcript_region:SL2.40ch12:63740438..63742318+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MMG1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00059333g0001.1 protein NbS00024018g0008.1 protein NbS00034729g0004.1 protein NbS00022034g0002.1 protein ; (*GB) gi|255583564|ref|XP_002532538.1| (e_value=6e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G52490.1 (e_value=2e-26) | Symbols: | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein | chr3:19455850-19458721 REVERSE LENGTH=815;; (*ITAG) Solyc10g082000.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62233723-62237147 transcript_region:SL2.40ch10:62233723..62237147- go_terms:GO:0019538 functional_description:"Heat shock-like protein (AHRD V1 **-- B5A254_ARATH); contains Interpro domain(s) IPR004176 Clp, N-terminal "; GO:0019538 NbS00022034g0003.1 protein NbS00028132g0003.1 protein ; (*TAIR) AT4G04910.1 (e_value=1e-13) | Symbols: NSF | AAA-type ATPase family protein | chr4:2489696-2495666 REVERSE LENGTH=742;; (*ITAG) Solyc01g104920.2.1 (e_value=5e-15) genomic_reference:SL2.40ch01 gene_region:85004629-85013296 transcript_region:SL2.40ch01:85004629..85013296- go_terms:GO:0005524,GO:0017111,GO:0005488 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111,GO:0005488 NbS00021275g0002.1 protein NbS00018057g0002.1 protein NbS00005980g0216.1 protein NbS00005980g0217.1 protein NbS00005980g0221.1 protein NbS00032376g0002.1 protein NbS00013801g0005.1 protein ; (*GB) gi|255540969|ref|XP_002511549.1| (e_value=4e-53) Vacuolar protein sorting, putative [Ricinus communis];; (*SWP) sp|Q9STT2|VPS29_ARATH (e_value=1e-47) Vacuolar protein sorting-associated protein 29 OS=Arabidopsis thaliana GN=VPS29 PE=2 SV=1;; (*TAIR) AT3G47810.3 (e_value=1e-48) | Symbols: MAG1 | Calcineurin-like metallo-phosphoesterase superfamily protein | chr3:17637256-17639017 REVERSE LENGTH=190;; (*ITAG) Solyc03g113020.2.1 (e_value=7e-55) genomic_reference:SL2.40ch03 gene_region:57374726-57378948 transcript_region:SL2.40ch03:57374726..57378948+ go_terms:GO:0008565,GO:0042802 functional_description:"Vacuolar protein sorting 29 (AHRD V1 ***- B6SUM0_MAIZE); contains Interpro domain(s) IPR000979 Uncharacterised protein family UPF0025 "; GO:0008565,GO:0042802 NbS00010433g0011.1 protein NbS00010433g0012.1 protein NbS00010433g0006.1 protein NbS00010433g0007.1 protein NbS00033011g0005.1 protein NbS00024262g0011.1 protein NbS00024262g0004.1 protein NbS00024262g0008.1 protein NbS00024262g0009.1 protein ; (*GB) gi|147817651|emb|CAN62395.1| (e_value=6e-19) hypothetical protein VITISV_021306 [Vitis vinifera]; NbS00024262g0010.1 protein ; (*ITAG) Solyc09g061300.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:54223089-54223541 transcript_region:SL2.40ch09:54223089..54223541+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023400g0012.1 protein NbS00034299g0001.1 protein NbS00034299g0002.1 protein NbS00001763g0001.1 protein NbS00019921g0007.1 protein NbS00006648g0004.1 protein NbS00006648g0005.1 protein NbC25557440g0002.1 protein ; (*GB) gi|359489586|ref|XP_002264136.2| (e_value=1e-31) PREDICTED: uncharacterized protein LOC100255258 [Vitis vinifera];; (*TAIR) AT2G46560.1 (e_value=9e-25) | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:19115570-19125856 REVERSE LENGTH=2513;; (*ITAG) Solyc01g096110.2.1 (e_value=7e-62) genomic_reference:SL2.40ch01 gene_region:78967477-78987548 transcript_region:SL2.40ch01:78967477..78987548- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 *--- A1CP90_ASPCL); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00019567g0009.1 protein NbS00013241g0001.1 protein NbC24418860g0001.1 protein ; (*ITAG) Solyc01g095240.2.1 (e_value=3e-20) genomic_reference:SL2.40ch01 gene_region:78344509-78345600 transcript_region:SL2.40ch01:78344509..78345600- functional_description:"Unknown Protein (AHRD V1)"; NbS00009946g0003.1 protein NbS00007244g0008.1 protein NbS00024949g0006.1 protein NbS00024949g0007.1 protein NbS00018455g0003.1 protein NbS00002199g0004.1 protein NbS00052752g0002.1 protein ; (*TAIR) AT2G18720.1 (e_value=2e-14) | Symbols: | Translation elongation factor EF1A/initiation factor IF2gamma family protein | chr2:8114920-8116759 REVERSE LENGTH=470;; (*ITAG) Solyc01g066690.2.1 (e_value=7e-17) genomic_reference:SL2.40ch01 gene_region:67249597-67259592 transcript_region:SL2.40ch01:67249597..67259592+ go_terms:GO:0003743 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 **** Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0003743 NbS00006041g0005.1 protein ; (*GB) gi|224029287|gb|ACN33719.1| (e_value=1e-26) unknown [Zea mays]; NbS00006041g0008.1 protein NbS00011019g0006.1 protein NbS00011019g0007.1 protein NbS00000171g0006.1 protein NbS00005799g0003.1 protein ; (*ITAG) Solyc08g016610.1.1 (e_value=6e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7903101-7906221 transcript_region:SL2.40ch08:7903101..7906221- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00002081g0008.1 protein NbS00002081g0103.1 protein NbS00002081g0104.1 protein NbS00002081g0108.1 protein NbS00032557g0003.1 protein NbC24177883g0001.1 protein ; (*GB) gi|224071947|ref|XP_002303599.1| (e_value=2e-25) tir-nbs resistance protein [Populus trichocarpa];; (*TAIR) AT4G23440.1 (e_value=4e-24) | Symbols: | Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964;; (*ITAG) Solyc08g081260.1.1 (e_value=2e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61486528-61489521 transcript_region:SL2.40ch08:61486528..61489521+ go_terms:GO:0031224,GO:0017111 functional_description:"Tir-nbs resistance protein (AHRD V1 **-- B9GWT3_POPTR); contains Interpro domain(s) IPR000157 Toll-Interleukin receptor "; GO:0031224,GO:0017111 NbS00011425g0004.1 protein ; (*GB) gi|224065415|ref|XP_002301806.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84SN3|CDKF3_ORYSJ (e_value=9e-17) Cyclin-dependent kinase F-3 OS=Oryza sativa subsp. japonica GN=CDKF-3 PE=2 SV=1;; (*TAIR) AT4G13020.4 (e_value=2e-14) | Symbols: MHK | Protein kinase superfamily protein | chr4:7603947-7606732 FORWARD LENGTH=405;; (*ITAG) Solyc06g083210.2.1 (e_value=4e-33) genomic_reference:SL2.40ch06 gene_region:45017429-45023473 transcript_region:SL2.40ch06:45017429..45023473+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- B7ZEB8_EUPRA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00012337g0012.1 protein ; (*GB) gi|147834808|emb|CAN70548.1| (e_value=9e-19) hypothetical protein VITISV_002754 [Vitis vinifera];; (*TAIR) AT3G20920.2 (e_value=8e-18) | Symbols: | translocation protein-related | chr3:7328763-7330698 REVERSE LENGTH=364;; (*ITAG) Solyc11g065690.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:48305577-48311971 transcript_region:SL2.40ch11:48305577..48311971+ go_terms:GO:0016021 functional_description:"Protein transporter (AHRD V1 **-- B6UFL6_MAIZE); contains Interpro domain(s) IPR004728 Translocation protein Sec62 "; GO:0016021 NbS00012337g0006.1 protein ; (*ITAG) Solyc00g058280.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:14036744-14037773 transcript_region:SL2.40ch00:14036744..14037773- functional_description:"Unknown Protein (AHRD V1)"; NbS00012337g0008.1 protein NbS00032478g0004.1 protein NbS00025761g0005.1 protein NbS00025761g0006.1 protein NbS00045730g0001.1 protein ; (*GB) gi|225424071|ref|XP_002282799.1| (e_value=1e-28) PREDICTED: uncharacterized protein LOC100249231 [Vitis vinifera];; (*TAIR) AT1G68220.1 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF1218) | chr1:25570322-25571562 FORWARD LENGTH=201;; (*ITAG) Solyc05g008900.2.1 (e_value=3e-36) genomic_reference:SL2.40ch05 gene_region:3110785-3115464 transcript_region:SL2.40ch05:3110785..3115464- go_terms:GO:0005515 functional_description:"COSII_At1g13380 (Fragment) (AHRD V1 *-*- C0KEY4_DATIN); contains Interpro domain(s) IPR009606 Protein of unknown function DUF1218 "; GO:0005515 NbS00058023g0001.1 protein NbS00061481g0001.1 protein NbS00014010g0003.1 protein NbS00022204g0009.1 protein NbS00022204g0010.1 protein NbS00027612g0004.1 protein NbS00012403g0002.1 protein NbS00010493g0017.1 protein NbS00010493g0010.1 protein NbS00014461g0002.1 protein NbS00008834g0105.1 protein NbS00004891g0006.1 protein ; (*GB) gi|147777218|emb|CAN63286.1| (e_value=4e-36) hypothetical protein VITISV_025194 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=2e-29) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT1G14600.1 (e_value=1e-30) | Symbols: | Homeodomain-like superfamily protein | chr1:5001185-5003370 REVERSE LENGTH=255;; (*ITAG) Solyc04g008480.1.1 (e_value=1e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2095913-2099972 transcript_region:SL2.40ch04:2095913..2099972- go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q10S98_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00004891g0007.1 protein NbS00004891g0009.1 protein NbS00054710g0002.1 protein NbS00006290g0009.1 protein NbS00045921g0001.1 protein NbS00007728g0012.1 protein NbS00007728g0008.1 protein NbS00021844g0004.1 protein NbS00003929g0005.1 protein NbS00003929g0006.1 protein NbS00031719g0005.1 protein NbS00008515g0006.1 protein ; (*TAIR) AT2G38100.1 (e_value=3e-18) | Symbols: | proton-dependent oligopeptide transport (POT) family protein | chr2:15948484-15950228 REVERSE LENGTH=521; NbS00011134g0107.1 protein NbS00004833g0005.1 protein NbS00004833g0008.1 protein NbS00027634g0003.1 protein NbS00027634g0004.1 protein NbS00014193g0005.1 protein NbS00006300g0002.1 protein NbS00002132g0007.1 protein NbS00053159g0002.1 protein NbS00003849g0008.1 protein NbS00003849g0009.1 protein NbS00003849g0010.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=6e-21) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc06g073050.2.1 (e_value=3e-23) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00012562g0004.1 protein NbS00012562g0006.1 protein NbS00020366g0009.1 protein NbS00040676g0005.1 protein ; (*ITAG) Solyc01g066930.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67586205-67591659 transcript_region:SL2.40ch01:67586205..67591659- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006508 NbS00032568g0001.1 protein NbS00032568g0004.1 protein NbS00033849g0004.1 protein ; (*GB) gi|356545017|ref|XP_003540942.1| (e_value=1e-12) PREDICTED: uncharacterized protein LOC100799563 [Glycine max];; (*ITAG) Solyc07g043210.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:54142075-54143659 transcript_region:SL2.40ch07:54142075..54143659- functional_description:"Unknown Protein (AHRD V1)"; NbS00053645g0005.1 protein NbS00035066g0005.1 protein NbS00035066g0009.1 protein NbS00043084g0003.1 protein NbS00043084g0004.1 protein NbS00018652g0002.1 protein NbS00036901g0008.1 protein NbS00003546g0006.1 protein NbS00043890g0004.1 protein NbS00052259g0003.1 protein NbS00047538g0006.1 protein ; (*ITAG) Solyc01g010100.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4837391-4838867 transcript_region:SL2.40ch01:4837391..4838867+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00038819g0005.1 protein NbS00038819g0009.1 protein NbS00003176g0011.1 protein NbS00003176g0012.1 protein NbS00003176g0008.1 protein ; (*ITAG) Solyc06g076860.2.1 (e_value=2e-11) genomic_reference:SL2.40ch06 gene_region:44152891-44159926 transcript_region:SL2.40ch06:44152891..44159926+ go_terms:GO:0005515,GO:0003682 functional_description:"Cell division control protein 6 homolog (AHRD V1 **-- CDC6_MOUSE); contains Interpro domain(s) IPR016314 Cell division control, Cdc6 "; GO:0005515,GO:0003682 NbS00003176g0010.1 protein NbS00033858g0002.1 protein NbS00017066g0011.1 protein NbS00017066g0009.1 protein NbS00033706g0001.1 protein ; (*GB) gi|224064547|ref|XP_002301513.1| (e_value=2e-51) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62390.1 (e_value=8e-52) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=8e-56) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00047855g0003.1 protein NbS00026549g0005.1 protein ; (*GB) gi|187611217|gb|ACD13788.1| (e_value=1e-16) starch synthase V precursor [Solanum tuberosum];; (*ITAG) Solyc02g091770.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47564018-47567926 transcript_region:SL2.40ch02:47564018..47567926+ functional_description:"Glycogen synthase (AHRD V1 ***- B0C2U1_ACAM1)"; NbS00026549g0007.1 protein NbS00021849g0005.1 protein NbS00021849g0006.1 protein NbS00018148g0005.1 protein NbS00045919g0004.1 protein ; (*ITAG) Solyc06g009730.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:3701191-3703068 transcript_region:SL2.40ch06:3701191..3703068- functional_description:"Unknown Protein (AHRD V1)"; NbS00045919g0005.1 protein NbS00025151g0011.1 protein NbS00025151g0015.1 protein ; (*GB) gi|224103017|ref|XP_002312891.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT2G45850.2 (e_value=5e-17) | Symbols: | AT hook motif DNA-binding family protein | chr2:18871901-18873457 REVERSE LENGTH=348;; (*ITAG) Solyc09g008940.2.1 (e_value=4e-19) genomic_reference:SL2.40ch09 gene_region:2333443-2337481 transcript_region:SL2.40ch09:2333443..2337481+ go_terms:GO:0003677,GO:0006468 functional_description:"AT-hook motif nuclear localized protein 1 (AHRD V1 *-*- Q8VYJ2_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677,GO:0006468 NbS00025151g0008.1 protein NbS00005050g0006.1 protein NbS00043794g0003.1 protein NbS00010818g0001.1 protein NbS00001822g0004.1 protein NbS00013139g0004.1 protein NbS00014133g0001.1 protein NbS00003643g0002.1 protein NbS00007632g0012.1 protein NbS00022809g0004.1 protein NbS00022809g0005.1 protein NbS00022809g0006.1 protein ; (*GB) gi|224053689|ref|XP_002297930.1| (e_value=3e-22) predicted protein [Populus trichocarpa]; NbS00014588g0007.1 protein ; (*GB) gi|27529848|dbj|BAC53939.1| (e_value=2e-16) MCM protein-like protein [Nicotiana tabacum];; (*TAIR) AT1G44900.1 (e_value=3e-14) | Symbols: MCM2, ATMCM2 | minichromosome maintenance (MCM2/3/5) family protein | chr1:16970291-16974457 FORWARD LENGTH=936;; (*ITAG) Solyc11g040120.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28583677-28588706 transcript_region:SL2.40ch11:28583677..28588706+ go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q8JGR5_DANRE); contains Interpro domain(s) IPR008045 MCM protein 2 "; GO:0005515 NbS00009441g0002.1 protein ; (*GB) gi|225434423|ref|XP_002272461.1| (e_value=1e-25) PREDICTED: uncharacterized protein LOC100265673 [Vitis vinifera];; (*TAIR) AT5G01710.1 (e_value=2e-25) | Symbols: | methyltransferases | chr5:263709-265250 REVERSE LENGTH=513;; (*ITAG) Solyc09g015040.1.1 (e_value=6e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:7854568-7856100 transcript_region:SL2.40ch09:7854568..7856100+ functional_description:"Os08g0119500 protein (Fragment) (AHRD V1 *-*- Q0J8C9_ORYSJ)"; NbS00041167g0002.1 protein NbS00041167g0005.1 protein NbS00021138g0007.1 protein NbS00007245g0004.1 protein NbS00007245g0005.1 protein NbS00045981g0003.1 protein NbS00026324g0002.1 protein NbS00016200g0001.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=5e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00024182g0001.1 protein NbS00011672g0105.1 protein NbS00021171g0003.1 protein NbS00015338g0004.1 protein ; (*GB) gi|239586196|gb|ACN41352.2| (e_value=8e-24) protein phosphatase 2A regulatory subunit A [Betula pendula];; (*SWP) sp|Q38950|2AAB_ARATH (e_value=2e-24) Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2;; (*TAIR) AT3G25800.1 (e_value=2e-25) | Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587;; (*ITAG) Solyc05g009600.2.1 (e_value=6e-28) genomic_reference:SL2.40ch05 gene_region:3800023-3807291 transcript_region:SL2.40ch05:3800023..3807291+ go_terms:GO:0017018 functional_description:"Phosphatase 2A regulatory A subunit (AHRD V1 **** Q9S7C5_ORYSA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0017018 NbS00015338g0007.1 protein ; (*GB) gi|48209881|gb|AAT40487.1| (e_value=5e-12) putative disease resistance protein [Solanum demissum];; (*ITAG) Solyc04g007490.2.1 (e_value=2e-15) genomic_reference:SL2.40ch04 gene_region:1161752-1165461 transcript_region:SL2.40ch04:1161752..1165461- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0005515,GO:0000166 NbS00015338g0009.1 protein NbS00003396g0106.1 protein NbS00003494g0002.1 protein NbS00011108g0017.1 protein NbS00011108g0021.1 protein NbS00013410g0006.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-13) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00030894g0001.1 protein NbC26282561g0002.1 protein NbS00016042g0011.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=4e-16) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00029760g0003.1 protein NbS00029760g0004.1 protein NbS00006454g0004.1 protein NbS00006454g0006.1 protein NbS00019376g0003.1 protein NbS00019376g0004.1 protein NbS00013515g0013.1 protein NbS00019726g0003.1 protein NbS00047341g0006.1 protein NbS00015435g0008.1 protein NbS00012442g0105.1 protein NbS00007609g0013.1 protein NbS00007609g0014.1 protein NbS00007609g0007.1 protein NbS00007609g0010.1 protein NbS00003372g0005.1 protein NbS00020169g0002.1 protein ; (*GB) gi|224139108|ref|XP_002322982.1| (e_value=6e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q92797|SYMPK_HUMAN (e_value=3e-24) Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2;; (*TAIR) AT5G01400.1 (e_value=8e-30) | Symbols: ESP4 | HEAT repeat-containing protein | chr5:162803-171072 REVERSE LENGTH=1467;; (*ITAG) Solyc09g005340.2.1 (e_value=1e-62) genomic_reference:SL2.40ch09 gene_region:262449-269376 transcript_region:SL2.40ch09:262449..269376+ functional_description:"Symplekin (AHRD V1 ***- Q6P3Q8_XENTR)"; NbS00011043g0007.1 protein NbS00011043g0008.1 protein NbS00015207g0008.1 protein NbS00021193g0003.1 protein NbS00006813g0004.1 protein NbS00035084g0004.1 protein NbS00035519g0001.1 protein NbS00006524g0001.1 protein NbS00010184g0007.1 protein NbS00012438g0008.1 protein NbS00006680g0003.1 protein NbS00006680g0004.1 protein NbS00030156g0005.1 protein ; (*GB) gi|24461860|gb|AAN62347.1|AF506028_14 (e_value=2e-14) CTV.20 [Citrus trifoliata]; NbS00045693g0002.1 protein NbS00015801g0008.1 protein NbS00000512g0005.1 protein ; (*ITAG) Solyc04g074620.1.1 (e_value=3e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00000263g0012.1 protein NbS00000263g0010.1 protein NbS00036777g0001.1 protein ; (*ITAG) Solyc02g094510.2.1 (e_value=4e-33) genomic_reference:SL2.40ch02 gene_region:49597489-49611444 transcript_region:SL2.40ch02:49597489..49611444- functional_description:"Ring finger protein 10 (AHRD V1 *-*- Q6P1V6_XENTR)"; NbS00036777g0002.1 protein NbS00025098g0003.1 protein ; (*ITAG) Solyc03g062860.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:29739326-29742085 transcript_region:SL2.40ch03:29739326..29742085- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-BL Gag-Pol polyprotein (AHRD V1 *-*- YB11B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00038243g0005.1 protein NbS00024521g0003.1 protein NbS00024521g0004.1 protein NbS00005632g0005.1 protein NbS00023556g0002.1 protein NbS00023556g0006.1 protein NbS00007032g0004.1 protein NbS00000203g0004.1 protein NbS00002351g0013.1 protein NbS00002134g0001.1 protein NbS00002134g0111.1 protein NbS00002134g0109.1 protein NbS00001478g0010.1 protein NbS00032251g0004.1 protein ; (*GB) gi|255542420|ref|XP_002512273.1| (e_value=1e-21) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc01g102880.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83313053-83324485 transcript_region:SL2.40ch01:83313053..83324485- go_terms:GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 NbS00003767g0006.1 protein ; (*ITAG) Solyc08g066000.1.1 (e_value=5e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:51655187-51659294 transcript_region:SL2.40ch08:51655187..51659294- functional_description:"Binding protein (AHRD V1 ***- D7M9N9_ARALY)"; NbS00008417g0001.1 protein NbS00012174g0118.1 protein NbS00001984g0006.1 protein NbS00004807g0102.1 protein NbS00056741g0006.1 protein NbS00056741g0009.1 protein NbS00022759g0002.1 protein NbS00029861g0017.1 protein NbS00029861g0008.1 protein NbS00038068g0005.1 protein NbS00038068g0009.1 protein NbS00007615g0004.1 protein NbS00007615g0303.1 protein NbS00007615g0306.1 protein NbS00018271g0001.1 protein NbS00018271g0002.1 protein NbS00030068g0003.1 protein NbS00017214g0006.1 protein NbS00056181g0001.1 protein NbS00010427g0013.1 protein NbS00028157g0005.1 protein NbS00007361g0001.1 protein NbS00007361g0002.1 protein ; (*GB) gi|255573202|ref|XP_002527530.1| (e_value=1e-16) cyclin, putative [Ricinus communis];; (*ITAG) Solyc04g008070.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00034787g0103.1 protein NbS00029628g0008.1 protein ; (*ITAG) Solyc07g023940.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00006327g0004.1 protein ; (*GB) gi|134141103|gb|ABO61160.1| (e_value=5e-47) NADH dehydrogenase subunit 5 [Diervilla sessilifolia];; (*SWP) sp|P29388|NU5M_ARATH (e_value=6e-45) NADH-ubiquinone oxidoreductase chain 5 OS=Arabidopsis thaliana GN=ND5 PE=2 SV=3;; (*ITAG) ATMG00665.1 (e_value=3e-46) | Symbols: NAD5B, NAD5.2, NAD5 | NADH dehydrogenase 5B | chrM:190740-190761 REVERSE LENGTH=669; NbS00006327g0009.1 protein NbS00055862g0004.1 protein NbS00046534g0002.1 protein NbS00010511g0001.1 protein NbS00010511g0002.1 protein NbS00002274g0006.1 protein NbS00019730g0002.1 protein NbS00022982g0003.1 protein NbS00052924g0002.1 protein NbS00016367g0009.1 protein NbS00024801g0001.1 protein NbS00025923g0003.1 protein NbS00040185g0005.1 protein NbS00024677g0011.1 protein NbS00024677g0014.1 protein NbS00024677g0016.1 protein NbS00024677g0017.1 protein NbS00009589g0003.1 protein NbS00009589g0108.1 protein NbS00009589g0109.1 protein NbS00034623g0002.1 protein NbS00024209g0013.1 protein ; (*GB) gi|359807616|ref|NP_001241163.1| (e_value=6e-18) uncharacterized protein LOC100817577 [Glycine max];; (*SWP) sp|P52904|ODPB_PEA (e_value=2e-18) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1;; (*TAIR) AT5G50850.1 (e_value=6e-18) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc03g097680.2.1 (e_value=3e-20) genomic_reference:SL2.40ch03 gene_region:53455935-53462816 transcript_region:SL2.40ch03:53455935..53462816+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00024209g0008.1 protein NbS00024209g0009.1 protein NbS00024503g0005.1 protein NbS00024503g0006.1 protein ; (*GB) gi|147771519|emb|CAN66750.1| (e_value=3e-41) hypothetical protein VITISV_034413 [Vitis vinifera];; (*SWP) sp|Q5Z8P2|PUS2_ORYSJ (e_value=8e-35) RNA pseudourine synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0717400 PE=2 SV=1;; (*TAIR) AT1G76050.2 (e_value=5e-31) | Symbols: | Pseudouridine synthase family protein | chr1:28540858-28542826 FORWARD LENGTH=430;; (*ITAG) Solyc04g081920.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:63370583-63373715 transcript_region:SL2.40ch04:63370583..63373715+ go_terms:GO:0005515,GO:0009982 functional_description:"Pseudouridine synthase (AHRD V1 **** Q2S3B7_SALRD); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0005515,GO:0009982 NbS00001064g0006.1 protein NbS00002571g0003.1 protein NbS00037626g0001.1 protein ; (*GB) gi|356535492|ref|XP_003536279.1| (e_value=4e-20) PREDICTED: exocyst complex component 7-like [Glycine max];; (*TAIR) AT5G52340.1 (e_value=3e-19) | Symbols: ATEXO70A2, EXO70A2 | exocyst subunit exo70 family protein A2 | chr5:21250802-21253939 FORWARD LENGTH=631;; (*ITAG) Solyc11g006620.1.1 (e_value=6e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1223086-1234198 transcript_region:SL2.40ch11:1223086..1234198+ go_terms:GO:0000145 functional_description:"Exocyst complex protein exo70 (AHRD V1 **-- EXO70_ASPFU); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0000145 NbS00002788g0002.1 protein NbS00009220g0001.1 protein ; (*GB) gi|225462880|ref|XP_002273141.1| (e_value=2e-49) PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Vitis vinifera];; (*SWP) sp|O14327|PAB2_SCHPO (e_value=4e-26) Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=2 SV=1;; (*TAIR) AT5G51120.1 (e_value=2e-46) | Symbols: PABN1, ATPABN1 | polyadenylate-binding protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227;; (*ITAG) Solyc10g047360.1.1 (e_value=5e-55) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:36096199-36100555 transcript_region:SL2.40ch10:36096199..36100555- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00022390g0006.1 protein NbS00020937g0004.1 protein NbS00026910g0002.1 protein ; (*GB) gi|356520762|ref|XP_003529029.1| (e_value=3e-45) PREDICTED: ELMO domain-containing protein A-like isoform 2 [Glycine max];; (*TAIR) AT2G44770.1 (e_value=7e-42) | Symbols: | ELMO/CED-12 family protein | chr2:18457817-18459886 FORWARD LENGTH=266;; (*ITAG) Solyc01g089980.2.1 (e_value=3e-49) genomic_reference:SL2.40ch01 gene_region:75451177-75457993 transcript_region:SL2.40ch01:75451177..75457993- go_terms:GO:0005856 functional_description:"Engulfment and cell motility protein (AHRD V1 ***- Q16Y60_AEDAE); contains Interpro domain(s) IPR006816 Engulfment and cell motility, ELMO "; GO:0005856 NbS00022695g0006.1 protein NbC24680907g0001.1 protein ; (*GB) gi|147817754|emb|CAN66662.1| (e_value=2e-15) hypothetical protein VITISV_031722 [Vitis vinifera];; (*TAIR) AT1G74400.1 (e_value=4e-13) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:27963953-27965341 FORWARD LENGTH=462;; (*ITAG) Solyc03g115800.1.1 (e_value=1e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:59447518-59448798 transcript_region:SL2.40ch03:59447518..59448798+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00009569g0006.1 protein NbS00034588g0004.1 protein ; (*GB) gi|350539197|ref|NP_001233868.1| (e_value=8e-17) 12-oxophytodienoate reductase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9FEX0|OPRL_SOLLC (e_value=2e-18) 12-oxophytodienoate reductase-like protein OS=Solanum lycopersicum GN=OPR2 PE=2 SV=1;; (*TAIR) AT1G09400.1 (e_value=5e-14) | Symbols: | FMN-linked oxidoreductases superfamily protein | chr1:3033676-3034993 REVERSE LENGTH=324;; (*ITAG) Solyc01g103390.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:83760511-83763127 transcript_region:SL2.40ch01:83760511..83763127- go_terms:GO:0008152,GO:0016491 functional_description:"Flavin oxidoreductase/NADH oxidase (AHRD V1 **-- A0YMI2_LYNSP); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0008152,GO:0016491 NbS00020830g0003.1 protein NbS00010254g0002.1 protein NbS00011122g0012.1 protein NbS00008941g0014.1 protein NbS00008941g0015.1 protein NbS00008941g0016.1 protein NbS00008941g0007.1 protein ; (*GB) gi|255572465|ref|XP_002527167.1| (e_value=2e-58) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G32440.3 (e_value=2e-43) | Symbols: | Ubiquitin system component Cue protein | chr5:12077014-12078396 FORWARD LENGTH=265;; (*ITAG) Solyc03g116780.2.1 (e_value=4e-62) genomic_reference:SL2.40ch03 gene_region:60110746-60114311 transcript_region:SL2.40ch03:60110746..60114311+ functional_description:"CUE domain containing protein (AHRD V1 **-- B6TCB4_MAIZE); contains Interpro domain(s) IPR009060 UBA-like "; NbS00005618g0002.1 protein NbS00005618g0004.1 protein ; (*GB) gi|212274465|ref|NP_001130530.1| (e_value=3e-79) uncharacterized protein LOC100191629 [Zea mays];; (*SWP) sp|Q56Y85|AMP2B_ARATH (e_value=2e-80) Methionine aminopeptidase 2B OS=Arabidopsis thaliana GN=MAP2B PE=2 SV=2;; (*TAIR) AT3G59990.4 (e_value=2e-81) | Symbols: MAP2B | methionine aminopeptidase 2B | chr3:22155921-22158551 REVERSE LENGTH=439;; (*ITAG) Solyc01g006800.2.1 (e_value=3e-87) genomic_reference:SL2.40ch01 gene_region:1367104-1371678 transcript_region:SL2.40ch01:1367104..1371678+ go_terms:GO:0005515,GO:0070006 functional_description:"Methionine aminopeptidase (AHRD V1 ***- B9ST99_RICCO); contains Interpro domain(s) IPR002468 Peptidase M24A, methionine aminopeptidase, subfamily 2 "; GO:0005515,GO:0070006 NbS00001802g0006.1 protein NbS00029216g0001.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=4e-17) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00038668g0003.1 protein NbS00002951g0006.1 protein NbS00030507g0002.1 protein NbS00000868g0101.1 protein NbS00021794g0004.1 protein ; (*GB) gi|4309972|gb|AAB81875.2| (e_value=2e-36) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT4G08630.1 (e_value=5e-39) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 1487 Blast hits to 747 proteins in 184 species: Archae - 0; Bacteria - 56; Metazoa - 305; Fungi - 197; Plants - 180; Viruses - 3; Other Eukaryotes - 746 (source: NCBI BLink). | chr4:5506998-5511959 REVERSE LENGTH=845;; (*ITAG) Solyc03g118390.2.1 (e_value=5e-35) genomic_reference:SL2.40ch03 gene_region:61331348-61340606 transcript_region:SL2.40ch03:61331348..61340606- functional_description:"Chromosome 14 contig 1 DNA sequence (AHRD V1 *-*- Q00WF1_OSTTA)"; NbS00021794g0005.1 protein NbS00021388g0003.1 protein NbS00021388g0004.1 protein NbS00040758g0004.1 protein ; (*GB) gi|329741905|gb|AEB98600.1| (e_value=8e-30) alpha-galactosidase [Nicotiana tabacum];; (*SWP) sp|Q42656|AGAL_COFAR (e_value=4e-31) Alpha-galactosidase OS=Coffea arabica PE=1 SV=1;; (*TAIR) AT5G08370.2 (e_value=2e-28) | Symbols: AtAGAL2, AGAL2 | alpha-galactosidase 2 | chr5:2691116-2693441 REVERSE LENGTH=370;; (*ITAG) Solyc03g019790.2.1 (e_value=1e-31) genomic_reference:SL2.40ch03 gene_region:6715747-6721534 transcript_region:SL2.40ch03:6715747..6721534- go_terms:GO:0004557,GO:0008456 functional_description:"Alpha-galactosidase (AHRD V1 **** Q9SP05_SOLLC); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0004557,GO:0008456 NbS00037501g0013.1 protein NbS00037501g0016.1 protein NbS00037501g0021.1 protein NbS00012816g0003.1 protein NbS00020253g0005.1 protein NbS00027440g0006.1 protein ; (*GB) gi|334902911|gb|AEH25587.1| (e_value=5e-17) transposase [Solanum demissum];; (*ITAG) Solyc10g054680.1.1 (e_value=4e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:51207770-51208849 transcript_region:SL2.40ch10:51207770..51208849+ functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00029665g0002.1 protein NbS00007596g0005.1 protein ; (*GB) gi|224087423|ref|XP_002335142.1| (e_value=8e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43780.2 (e_value=4e-25) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18136444-18136647 REVERSE LENGTH=67; NbS00007596g0008.1 protein NbS00044611g0004.1 protein NbS00002146g0003.1 protein NbS00002146g0004.1 protein ; (*GB) gi|7406995|gb|AAF61863.1|AF193770_1 (e_value=2e-40) DNA-binding protein 3 [Nicotiana tabacum]; NbS00005053g0001.1 protein NbS00011310g0001.1 protein ; (*GB) gi|224118714|ref|XP_002317888.1| (e_value=9e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18060.1 (e_value=6e-22) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6212065-6213314 REVERSE LENGTH=226;; (*ITAG) Solyc06g069030.2.1 (e_value=2e-35) genomic_reference:SL2.40ch06 gene_region:39227428-39229756 transcript_region:SL2.40ch06:39227428..39229756+ functional_description:"PAP fibrillin domain containing protein expressed (AHRD V1 **-- D8L9T8_WHEAT)"; NbS00002186g0104.1 protein NbS00002186g0107.1 protein NbS00046866g0104.1 protein NbS00046866g0105.1 protein NbS00019110g0003.1 protein NbS00023595g0006.1 protein NbS00012204g0003.1 protein NbS00043038g0002.1 protein ; (*TAIR) AT2G46520.1 (e_value=2e-14) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00021099g0009.1 protein ; (*GB) gi|147861778|emb|CAN78916.1| (e_value=1e-25) hypothetical protein VITISV_032223 [Vitis vinifera];; (*SWP) sp|O22267|CKI1_ARATH (e_value=8e-19) Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1;; (*TAIR) AT2G47430.1 (e_value=6e-20) | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459167-19463122 REVERSE LENGTH=1122;; (*ITAG) Solyc12g099720.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65086331-65089881 transcript_region:SL2.40ch12:65086331..65089881+ go_terms:GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 functional_description:"Sensor histidine kinase (AHRD V1 *-*- B0TGI2_HELMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0016310,GO:0005524,GO:0007165,GO:0006355,GO:0018106 NbS00012913g0004.1 protein NbS00035151g0002.1 protein NbS00003565g0002.1 protein NbS00003565g0005.1 protein NbS00011628g0006.1 protein NbS00024256g0001.1 protein NbS00060524g0001.1 protein NbS00002657g0007.1 protein NbS00002657g0009.1 protein NbS00008738g0002.1 protein NbS00018824g0012.1 protein NbS00018824g0015.1 protein NbS00018824g0010.1 protein NbS00046803g0001.1 protein ; (*GB) gi|356573040|ref|XP_003554673.1| (e_value=9e-23) PREDICTED: probable S-acyltransferase At3g04970-like [Glycine max];; (*ITAG) Solyc08g029200.2.1 (e_value=6e-37) genomic_reference:SL2.40ch08 gene_region:23020120-23033351 transcript_region:SL2.40ch08:23020120..23033351+ go_terms:GO:0019706 functional_description:"Palmitoyltransferase swf1 (AHRD V1 ***- B6TSC2_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0019706 NbS00033051g0004.1 protein NbS00028925g0004.1 protein ; (*GB) gi|357111568|ref|XP_003557584.1| (e_value=2e-27) PREDICTED: uncharacterized protein LOC100840153 [Brachypodium distachyon];; (*TAIR) AT4G24310.1 (e_value=7e-21) | Symbols: | Protein of unknown function (DUF679) | chr4:12600900-12601541 FORWARD LENGTH=213;; (*ITAG) Solyc02g077640.1.1 (e_value=2e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37115630-37116259 transcript_region:SL2.40ch02:37115630..37116259+ functional_description:"Genomic DNA chromosome 5 P1 clone MCL19 (AHRD V1 ***- Q9FNL3_ARATH); contains Interpro domain(s) IPR007770 Protein of unknown function DUF679 "; NbS00012445g0003.1 protein NbS00015470g0010.1 protein NbS00033102g0001.1 protein NbS00008129g0012.1 protein NbS00024877g0003.1 protein NbS00000429g0104.1 protein NbS00024549g0007.1 protein NbS00017917g0003.1 protein NbC23974699g0001.1 protein ; (*GB) gi|357440583|ref|XP_003590569.1| (e_value=3e-40) WD repeat and FYVE domain-containing protein [Medicago truncatula];; (*TAIR) AT1G03060.1 (e_value=2e-41) | Symbols: SPI | Beige/BEACH domain ;WD domain, G-beta repeat protein | chr1:712971-726891 REVERSE LENGTH=3601;; (*ITAG) Solyc09g065700.2.1 (e_value=2e-52) genomic_reference:SL2.40ch09 gene_region:59538692-59559305 transcript_region:SL2.40ch09:59538692..59559305+ go_terms:GO:0005488 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0005488 NbS00027512g0002.1 protein NbS00008261g0001.1 protein NbS00026105g0001.1 protein ; (*GB) gi|224068845|ref|XP_002326214.1| (e_value=5e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21540.1 (e_value=1e-27) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955;; (*ITAG) Solyc10g039190.1.1 (e_value=2e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:20678709-20686367 transcript_region:SL2.40ch10:20678709..20686367+ go_terms:GO:0030515 functional_description:"WD-repeat-containing protein (AHRD V1 **-- A8NX65_COPC7); contains Interpro domain(s) IPR007148 Small-subunit processome, Utp12 "; GO:0030515 NbS00029337g0105.1 protein NbS00029337g0107.1 protein NbS00029337g0110.1 protein NbS00024867g0003.1 protein NbS00025409g0002.1 protein NbS00025409g0004.1 protein NbS00052624g0001.1 protein NbS00001927g0007.1 protein ; (*GB) gi|189041711|sp|Q6ZT46.2|YK027_HUMAN (e_value=3e-44) RecName: Full=Putative uncharacterized protein FLJ44967; NbS00029120g0007.1 protein ; (*GB) gi|356497635|ref|XP_003517665.1| (e_value=3e-17) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max];; (*TAIR) AT1G32190.2 (e_value=3e-18) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:11593059-11595481 REVERSE LENGTH=337;; (*ITAG) Solyc08g076350.2.1 (e_value=5e-23) genomic_reference:SL2.40ch08 gene_region:57476093-57483705 transcript_region:SL2.40ch08:57476093..57483705- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 *--- C0HAS5_SALSA)"; NbC26114999g0001.1 protein ; (*GB) gi|37783300|gb|AAP41026.1| (e_value=1e-88) NTA15 protein [Nicotiana tabacum];; (*ITAG) Solyc11g011170.1.1 (e_value=1e-76) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:4238113-4242599 transcript_region:SL2.40ch11:4238113..4242599- functional_description:"ATA15 protein (AHRD V1 **-- Q5K6K5_ARATH)"; NbS00004515g0003.1 protein NbS00004515g0208.1 protein NbS00004515g0302.1 protein NbS00011337g0002.1 protein ; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=7e-18) transcription factor IIIA [Solanum lycopersicum];; (*TAIR) AT1G72050.2 (e_value=1e-17) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412;; (*ITAG) Solyc10g077110.1.1 (e_value=1e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00020287g0002.1 protein ; (*GB) gi|224056978|ref|XP_002299105.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19820.1 (e_value=1e-32) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00036780g0003.1 protein NbS00000815g0012.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=4e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00000815g0008.1 protein NbS00000815g0010.1 protein ; (*GB) gi|225454005|ref|XP_002280713.1| (e_value=4e-30) PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis protein osgepl1 [Vitis vinifera];; (*SWP) sp|Q2K3D7|GCP_RHIEC (e_value=5e-14) Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcp PE=3 SV=2;; (*TAIR) AT2G45270.1 (e_value=4e-27) | Symbols: GCP1 | glycoprotease 1 | chr2:18666583-18669332 FORWARD LENGTH=480;; (*ITAG) Solyc05g050940.2.1 (e_value=4e-32) genomic_reference:SL2.40ch05 gene_region:60312326-60319564 transcript_region:SL2.40ch05:60312326..60319564+ go_terms:GO:0005515,GO:0004125 functional_description:"O-sialoglycoprotein endopeptidase (AHRD V1 ***- B6SU43_MAIZE); contains Interpro domain(s) IPR017861 Peptidase M22, glycoprotease, subgroup "; GO:0005515,GO:0004125 NbS00014631g0006.1 protein NbS00014631g0008.1 protein NbS00010489g0011.1 protein NbS00010489g0016.1 protein NbS00010489g0017.1 protein NbS00010489g0018.1 protein NbS00010489g0019.1 protein NbS00010489g0022.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00007153g0002.1 protein NbS00001493g0013.1 protein NbS00001493g0008.1 protein NbS00001493g0010.1 protein NbS00026992g0023.1 protein NbS00026992g0024.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=2e-30) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*TAIR) AT1G34430.1 (e_value=2e-25) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00004719g0005.1 protein NbS00019305g0016.1 protein NbS00019464g0002.1 protein NbS00012701g0017.1 protein NbS00012701g0009.1 protein NbS00054352g0005.1 protein ; (*GB) gi|157086546|gb|ABV21218.1| (e_value=4e-14) At4g21420 [Arabidopsis thaliana]; NbS00018846g0004.1 protein NbS00018846g0007.1 protein NbS00038250g0002.1 protein NbS00038250g0003.1 protein NbS00038250g0005.1 protein NbS00000573g0005.1 protein NbS00000573g0009.1 protein NbS00004362g0011.1 protein NbS00004362g0004.1 protein NbS00004362g0007.1 protein NbS00016541g0005.1 protein NbS00016541g0007.1 protein NbS00021170g0006.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=1e-13) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00025067g0004.1 protein NbS00046604g0002.1 protein ; (*GB) gi|356501701|ref|XP_003519662.1| (e_value=6e-41) PREDICTED: uncharacterized protein LOC100794226 [Glycine max]; NbS00054589g0001.1 protein NbC25496274g0002.1 protein ; (*GB) gi|255550101|ref|XP_002516101.1| (e_value=7e-38) puromycin-sensitive aminopeptidase, putative [Ricinus communis];; (*TAIR) AT4G33090.1 (e_value=2e-38) | Symbols: APM1, ATAPM1 | aminopeptidase M1 | chr4:15965915-15970418 REVERSE LENGTH=879;; (*ITAG) Solyc08g062630.2.1 (e_value=1e-50) genomic_reference:SL2.40ch08 gene_region:48821743-48831500 transcript_region:SL2.40ch08:48821743..48831500+ go_terms:GO:0070006 functional_description:"Aminopeptidase-like protein (AHRD V1 ***- Q9SN00_ARATH); contains Interpro domain(s) IPR015568 Peptidase M1, puromycin-sensitive aminopeptidase "; GO:0070006 NbS00049437g0005.1 protein NbS00056279g0003.1 protein NbS00057866g0003.1 protein NbS00057866g0005.1 protein NbS00057866g0006.1 protein NbS00003434g0004.1 protein NbS00032474g0005.1 protein NbS00036074g0003.1 protein ; (*GB) gi|225435967|ref|XP_002270467.1| (e_value=8e-25) PREDICTED: uncharacterized protein LOC100244484 [Vitis vinifera];; (*ITAG) Solyc12g099940.1.1 (e_value=3e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65228592-65234661 transcript_region:SL2.40ch12:65228592..65234661+ go_terms:GO:0008152 functional_description:"Gcn5-related n-acetyltransferase family protein (AHRD V1 *-*- C1FD65_9CHLO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00042532g0007.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=2e-12) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00000361g0101.1 protein NbS00030385g0005.1 protein NbS00031571g0003.1 protein ; (*GB) gi|224075778|ref|XP_002304763.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|P0C897|Y3264_ARATH (e_value=1e-13) Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1;; (*TAIR) AT3G02645.1 (e_value=9e-15) | Symbols: | Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529;; (*ITAG) Solyc07g006930.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:1770787-1772328 transcript_region:SL2.40ch07:1770787..1772328+ functional_description:"Pentatricopeptide (PPR) repeat-containing protein-like (AHRD V1 *--- Q6ZCP9_ORYSJ); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00031571g0004.1 protein ; (*ITAG) Solyc02g084690.2.1 (e_value=9e-13) genomic_reference:SL2.40ch02 gene_region:42366670-42374867 transcript_region:SL2.40ch02:42366670..42374867- functional_description:"FG-GAP repeat-containing protein (AHRD V1 ***- D7LTM4_ARALY); contains Interpro domain(s) IPR013517 FG-GAP "; NbS00015576g0008.1 protein NbS00052603g0006.1 protein NbS00012987g0013.1 protein NbS00012987g0015.1 protein NbS00012987g0017.1 protein NbS00023419g0103.1 protein NbS00036179g0008.1 protein NbS00024284g0003.1 protein NbS00029432g0003.1 protein NbS00015021g0010.1 protein NbS00037914g0007.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=1e-30) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=4e-32) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=1e-27) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=3e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00044200g0002.1 protein ; (*GB) gi|359490548|ref|XP_002267012.2| (e_value=2e-43) PREDICTED: uncharacterized protein LOC100267290 [Vitis vinifera];; (*TAIR) AT1G65810.1 (e_value=2e-34) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1050;; (*ITAG) Solyc06g010090.1.1 (e_value=5e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4925954-4929076 transcript_region:SL2.40ch06:4925954..4929076+ functional_description:"DNA-binding protein SMUBP-2 (AHRD V1 *-*- C5FXH0_NANOT)"; NbS00039365g0004.1 protein NbS00017504g0001.1 protein ; (*ITAG) Solyc00g147570.2.1 (e_value=6e-15) genomic_reference:SL2.40ch00 gene_region:17325997-17328442 transcript_region:SL2.40ch00:17325997..17328442- go_terms:GO:0003779 functional_description:"Gelsolin (Fragment) (AHRD V1 **-- C0PU67_SALSA); contains Interpro domain(s) IPR007122 Gelsolin "; GO:0003779 NbS00000396g0006.1 protein ; (*GB) gi|255549098|ref|XP_002515604.1| (e_value=6e-31) Williams-Beuren syndrome chromosome region 16 protein, putative [Ricinus communis];; (*TAIR) AT5G08710.1 (e_value=2e-26) | Symbols: | Regulator of chromosome condensation (RCC1) family protein | chr5:2834858-2837866 REVERSE LENGTH=434;; (*ITAG) Solyc04g071040.2.1 (e_value=5e-12) genomic_reference:SL2.40ch04 gene_region:55505152-55514903 transcript_region:SL2.40ch04:55505152..55514903- go_terms:GO:0005086 functional_description:"Regulator of chromosome condensation domain-containing protein (AHRD V1 *--- D3BDN0_POLPA); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00013495g0001.1 protein NbS00003322g0004.1 protein NbS00020400g0004.1 protein NbS00020400g0006.1 protein NbS00020400g0007.1 protein ; (*GB) gi|359473405|ref|XP_003631297.1| (e_value=3e-41) PREDICTED: uncharacterized protein LOC100246722 [Vitis vinifera];; (*TAIR) AT3G05680.1 (e_value=5e-35) | Symbols: EMB2016 | embryo defective 2016 | chr3:1660802-1672015 REVERSE LENGTH=2138;; (*ITAG) Solyc03g020020.2.1 (e_value=4e-52) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbS00043615g0002.1 protein ; (*GB) gi|356564384|ref|XP_003550434.1| (e_value=2e-20) PREDICTED: GDSL esterase/lipase EXL3-like isoform 2 [Glycine max];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=2e-16) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=1e-17) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc12g089350.1.1 (e_value=5e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62923331-62926988 transcript_region:SL2.40ch12:62923331..62926988+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00043615g0003.1 protein NbS00037398g0007.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=9e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00024151g0105.1 protein NbS00024151g0108.1 protein NbS00034526g0004.1 protein NbS00019339g0006.1 protein NbS00001746g0004.1 protein NbS00001746g0005.1 protein NbS00024983g0002.1 protein ; (*GB) gi|225450919|ref|XP_002284549.1| (e_value=6e-53) PREDICTED: protein AUXIN RESPONSE 4 [Vitis vinifera];; (*SWP) sp|Q9FZ33|AXR4_ARATH (e_value=4e-46) Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1;; (*TAIR) AT1G54990.1 (e_value=3e-47) | Symbols: AXR4, RGR, RGR1 | alpha/beta-Hydrolases superfamily protein | chr1:20511565-20513489 FORWARD LENGTH=473; NbC24084661g0001.1 protein ; (*GB) gi|225452725|ref|XP_002277245.1| (e_value=6e-43) PREDICTED: translation factor GUF1 homolog, mitochondrial [Vitis vinifera];; (*SWP) sp|C5Z3W1|GUF1_SORBI (e_value=8e-44) Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor GN=Sb10g003070 PE=3 SV=1;; (*TAIR) AT5G39900.1 (e_value=3e-42) | Symbols: | Small GTP-binding protein | chr5:15976719-15978925 REVERSE LENGTH=663;; (*ITAG) Solyc03g058880.2.1 (e_value=8e-55) genomic_reference:SL2.40ch03 gene_region:23797823-23806755 transcript_region:SL2.40ch03:23797823..23806755+ go_terms:GO:0043022,GO:0003746 functional_description:"GTP-binding protein lepA (AHRD V1 **** C9LSH1_9FIRM); contains Interpro domain(s) IPR006297 GTP-binding protein LepA "; GO:0043022,GO:0003746 NbS00038825g0004.1 protein NbS00033905g0003.1 protein NbS00023602g0001.1 protein NbS00023602g0002.1 protein NbS00040319g0005.1 protein ; (*GB) gi|224133652|ref|XP_002327647.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|F4I0P8|VP35B_ARATH (e_value=1e-25) Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1;; (*TAIR) AT1G75850.1 (e_value=8e-27) | Symbols: VPS35B | VPS35 homolog B | chr1:28478053-28483874 REVERSE LENGTH=790;; (*ITAG) Solyc02g083560.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:41498304-41507470 transcript_region:SL2.40ch02:41498304..41507470+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00014729g0008.1 protein NbS00040868g0005.1 protein ; (*GB) gi|359494410|ref|XP_002266179.2| (e_value=1e-35) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Vitis vinifera];; (*SWP) sp|Q9FPS9|UBP15_ARATH (e_value=6e-18) Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2;; (*TAIR) AT1G17110.1 (e_value=5e-19) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=924;; (*ITAG) Solyc07g061780.2.1 (e_value=5e-96) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00040868g0006.1 protein NbS00003717g0011.1 protein NbS00003717g0012.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=2e-36) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00003717g0013.1 protein NbS00003717g0019.1 protein NbS00003717g0021.1 protein NbS00006791g0004.1 protein ; (*ITAG) Solyc00g304030.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00052135g0003.1 protein NbS00018506g0003.1 protein NbS00018506g0004.1 protein NbS00013231g0011.1 protein NbS00013231g0010.1 protein NbS00005251g0001.1 protein NbS00005251g0108.1 protein NbC25452543g0002.1 protein ; (*GB) gi|350538695|ref|NP_001234611.1| (e_value=1e-173) AvrPto-dependent Pto-interacting protein 3 [Solanum lycopersicum];; (*TAIR) AT2G44830.1 (e_value=2e-67) | Symbols: | Protein kinase superfamily protein | chr2:18490398-18492779 FORWARD LENGTH=765;; (*ITAG) Solyc01g090240.2.1 (e_value=2e-176) genomic_reference:SL2.40ch01 gene_region:75673551-75676761 transcript_region:SL2.40ch01:75673551..75676761+ go_terms:GO:0005515 functional_description:"Protein kinase 5 (AHRD V1 ***- Q8W4K8_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515 NbS00030000g0004.1 protein NbS00006514g0005.1 protein ; (*ITAG) Solyc03g121080.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:63362764-63365375 transcript_region:SL2.40ch03:63362764..63365375+ functional_description:"Unknown Protein (AHRD V1)"; NbS00010077g0014.1 protein NbS00010077g0015.1 protein NbS00026402g0004.1 protein NbS00019421g0012.1 protein NbS00019421g0005.1 protein NbS00019421g0008.1 protein NbS00005889g0002.1 protein NbS00018922g0010.1 protein NbS00043011g0002.1 protein ; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=2e-38) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=1e-37) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.3 (e_value=2e-39) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589603 FORWARD LENGTH=178;; (*ITAG) Solyc07g049410.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:56998369-57004964 transcript_region:SL2.40ch07:56998369..57004964- go_terms:GO:0005516 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0005516 NbS00035351g0003.1 protein NbS00018483g0001.1 protein NbS00016087g0005.1 protein NbS00030891g0001.1 protein NbS00012228g0003.1 protein NbS00020048g0010.1 protein NbS00031545g0011.1 protein NbS00031545g0012.1 protein NbS00031545g0013.1 protein NbS00031545g0009.1 protein NbS00004172g0001.1 protein NbS00004172g0002.1 protein ; (*GB) gi|224128634|ref|XP_002329052.1| (e_value=8e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT1G55140.2 (e_value=4e-23) | Symbols: | Ribonuclease III family protein | chr1:20572788-20574332 REVERSE LENGTH=170;; (*ITAG) Solyc03g121530.2.1 (e_value=4e-29) genomic_reference:SL2.40ch03 gene_region:63663788-63669237 transcript_region:SL2.40ch03:63663788..63669237+ go_terms:GO:0006396 functional_description:"Ribonuclease III (AHRD V1 ***- A2Q464_MEDTR); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00004172g0003.1 protein ; (*GB) gi|225442262|ref|XP_002279256.1| (e_value=1e-27) PREDICTED: uncharacterized protein LOC100242891 [Vitis vinifera];; (*TAIR) AT3G13740.2 (e_value=5e-22) | Symbols: | Ribonuclease III family protein | chr3:4504310-4505937 FORWARD LENGTH=241;; (*ITAG) Solyc03g121530.2.1 (e_value=2e-63) genomic_reference:SL2.40ch03 gene_region:63663788-63669237 transcript_region:SL2.40ch03:63663788..63669237+ go_terms:GO:0006396 functional_description:"Ribonuclease III (AHRD V1 ***- A2Q464_MEDTR); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00007840g0007.1 protein NbS00007840g0008.1 protein ; (*GB) gi|169764014|ref|XP_001727907.1| (e_value=7e-13) RNase H domain protein [Aspergillus oryzae RIB40]; NbS00007840g0009.1 protein NbS00027741g0012.1 protein NbS00027741g0007.1 protein NbS00017744g0002.1 protein NbS00002955g0001.1 protein ; (*GB) gi|357514921|ref|XP_003627749.1| (e_value=8e-18) hypothetical protein MTR_8g037800 [Medicago truncatula];; (*ITAG) Solyc01g109900.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:88504593-88506151 transcript_region:SL2.40ch01:88504593..88506151+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019100g0001.1 protein NbS00019100g0002.1 protein NbC24655598g0001.1 protein ; (*GB) gi|356536111|ref|XP_003536583.1| (e_value=1e-18) PREDICTED: BTB/POZ domain-containing protein NPY2-like [Glycine max];; (*SWP) sp|Q0WL52|NPY5_ARATH (e_value=1e-16) BTB/POZ domain-containing protein NPY5 OS=Arabidopsis thaliana GN=NPY5 PE=2 SV=2;; (*TAIR) AT4G37590.1 (e_value=8e-18) | Symbols: NPY5 | Phototropic-responsive NPH3 family protein | chr4:17663080-17665299 REVERSE LENGTH=580;; (*ITAG) Solyc01g107180.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:86566757-86573336 transcript_region:SL2.40ch01:86566757..86573336+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00032321g0002.1 protein NbS00032662g0003.1 protein ; (*GB) gi|255573269|ref|XP_002527563.1| (e_value=1e-40) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G20935.1 (e_value=3e-37) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3148 (InterPro:IPR021495); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7103487-7103945 FORWARD LENGTH=108; NbS00025210g0013.1 protein NbS00025210g0014.1 protein NbS00025210g0009.1 protein NbS00017484g0005.1 protein NbS00034474g0001.1 protein NbS00009865g0011.1 protein NbS00009865g0004.1 protein ; (*GB) gi|350538171|ref|NP_001234330.1| (e_value=1e-27) uncharacterized LOC544127 [Solanum lycopersicum];; (*ITAG) Solyc10g083610.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62712543-62724546 transcript_region:SL2.40ch10:62712543..62724546- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- Q1SMZ9_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00009865g0008.1 protein NbS00009865g0009.1 protein ; (*GB) gi|147853717|emb|CAN80220.1| (e_value=4e-36) hypothetical protein VITISV_027893 [Vitis vinifera];; (*SWP) sp|O64982|PRS7_PRUPE (e_value=3e-35) 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=3e-36) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc06g063140.2.1 (e_value=2e-36) genomic_reference:SL2.40ch06 gene_region:36272039-36278473 transcript_region:SL2.40ch06:36272039..36278473+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00019131g0011.1 protein NbS00019131g0006.1 protein NbS00019131g0009.1 protein NbS00019131g0010.1 protein NbS00044806g0001.1 protein ; (*GB) gi|255556492|ref|XP_002519280.1| (e_value=5e-40) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=1e-33) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.2 (e_value=7e-35) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1015;; (*ITAG) Solyc01g057900.2.1 (e_value=3e-47) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00034333g0001.1 protein NbS00038953g0012.1 protein NbS00038953g0005.1 protein ; (*GB) gi|225438843|ref|XP_002283618.1| (e_value=1e-22) PREDICTED: mortality factor 4-like protein 1 [Vitis vinifera];; (*TAIR) AT4G37280.1 (e_value=7e-19) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc02g092910.2.1 (e_value=4e-33) genomic_reference:SL2.40ch02 gene_region:48433906-48444181 transcript_region:SL2.40ch02:48433906..48444181+ go_terms:GO:0047485 functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR017398 Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit "; GO:0047485 NbS00038953g0010.1 protein ; (*GB) gi|225438843|ref|XP_002283618.1| (e_value=4e-24) PREDICTED: mortality factor 4-like protein 1 [Vitis vinifera];; (*TAIR) AT4G37280.1 (e_value=8e-23) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc02g092910.2.1 (e_value=3e-31) genomic_reference:SL2.40ch02 gene_region:48433906-48444181 transcript_region:SL2.40ch02:48433906..48444181+ go_terms:GO:0047485 functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR017398 Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit "; GO:0047485 NbS00006337g0001.1 protein ; (*GB) gi|356556906|ref|XP_003546761.1| (e_value=3e-21) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max];; (*ITAG) Solyc07g061780.2.1 (e_value=3e-62) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00015118g0011.1 protein NbS00019988g0001.1 protein NbS00012235g0001.1 protein NbS00042787g0006.1 protein NbS00007957g0008.1 protein NbS00013636g0004.1 protein NbS00017112g0105.1 protein NbS00017112g0106.1 protein NbS00017112g0107.1 protein NbS00017112g0109.1 protein NbS00012313g0012.1 protein ; (*GB) gi|357481325|ref|XP_003610948.1| (e_value=4e-22) 2-succinylbenzoate-CoA ligase [Medicago truncatula];; (*SWP) sp|F4HUK6|AAE1_ARATH (e_value=3e-19) Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1;; (*TAIR) AT1G20560.1 (e_value=3e-20) | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119927-7121730 REVERSE LENGTH=556;; (*ITAG) Solyc02g082910.2.1 (e_value=2e-30) genomic_reference:SL2.40ch02 gene_region:41119400-41123802 transcript_region:SL2.40ch02:41119400..41123802- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00006205g0109.1 protein NbS00001398g0004.1 protein NbS00016664g0001.1 protein NbS00016664g0003.1 protein NbS00022764g0007.1 protein NbS00001354g0002.1 protein NbS00006031g0004.1 protein NbS00008598g0006.1 protein ; (*TAIR) AT4G23940.1 (e_value=3e-16) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=4e-16) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00007846g0012.1 protein NbS00007846g0017.1 protein NbS00023442g0004.1 protein NbS00056599g0008.1 protein NbS00004530g0004.1 protein NbS00008347g0002.1 protein NbS00018132g0007.1 protein NbS00029388g0006.1 protein NbS00029388g0007.1 protein NbC25315011g0002.1 protein ; (*GB) gi|255572307|ref|XP_002527092.1| (e_value=4e-27) Peroxidase 12 precursor, putative [Ricinus communis];; (*SWP) sp|Q96520|PER12_ARATH (e_value=8e-22) Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1;; (*TAIR) AT1G71695.1 (e_value=6e-23) | Symbols: | Peroxidase superfamily protein | chr1:26964359-26966557 FORWARD LENGTH=358;; (*ITAG) Solyc04g071890.2.1 (e_value=1e-34) genomic_reference:SL2.40ch04 gene_region:56506704-56508808 transcript_region:SL2.40ch04:56506704..56508808+ go_terms:GO:0004601 functional_description:"Peroxidase 4 (AHRD V1 **** B7UCP4_LITCN); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601 NbS00001646g0003.1 protein NbS00023355g0005.1 protein NbS00040313g0001.1 protein NbS00024308g0002.1 protein NbS00015033g0001.1 protein NbS00022893g0004.1 protein NbS00025002g0002.1 protein NbS00037971g0006.1 protein NbS00037971g0009.1 protein NbS00032761g0002.1 protein ; (*GB) gi|225433588|ref|XP_002269672.1| (e_value=2e-102) PREDICTED: probable methionyl-tRNA synthetase [Vitis vinifera];; (*SWP) sp|Q9ZTS1|SYM_ORYSJ (e_value=5e-88) Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2;; (*TAIR) AT4G13780.1 (e_value=4e-84) | Symbols: | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative | chr4:7993366-7998433 REVERSE LENGTH=797;; (*ITAG) Solyc07g008950.2.1 (e_value=4e-133) genomic_reference:SL2.40ch07 gene_region:3973124-3982881 transcript_region:SL2.40ch07:3973124..3982881- go_terms:GO:0005515 functional_description:"Methionyl-tRNA synthetase (AHRD V1 ***- B2W192_PYRTR); contains Interpro domain(s) IPR015413 Aminoacyl-tRNA synthetase, class I (M) "; GO:0005515 NbS00040031g0004.1 protein NbS00040031g0005.1 protein NbS00052667g0005.1 protein ; (*GB) gi|255545562|ref|XP_002513841.1| (e_value=6e-20) Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=1e-14) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.1 (e_value=8e-16) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520;; (*ITAG) Solyc01g096990.2.1 (e_value=5e-28) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00008605g0001.1 protein NbS00020127g0015.1 protein NbS00020127g0008.1 protein NbS00020127g0010.1 protein ; (*ITAG) Solyc11g030810.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:20020996-20022779 transcript_region:SL2.40ch11:20020996..20022779+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038725g0001.1 protein NbS00026014g0002.1 protein NbS00009872g0004.1 protein NbS00018600g0002.1 protein NbS00018600g0003.1 protein NbS00037086g0004.1 protein NbS00037086g0008.1 protein NbS00022919g0001.1 protein NbS00022919g0102.1 protein NbS00019364g0006.1 protein NbS00019364g0007.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=1e-17) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00002409g0105.1 protein NbS00006202g0002.1 protein ; (*ITAG) Solyc06g049090.2.1 (e_value=2e-22) genomic_reference:SL2.40ch06 gene_region:28855711-28860815 transcript_region:SL2.40ch06:28855711..28860815- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B0C738_ACAM1); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00006202g0003.1 protein NbS00046444g0003.1 protein ; (*GB) gi|297828391|ref|XP_002882078.1| (e_value=7e-14) hypothetical protein ARALYDRAFT_483824 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P92964|RSP31_ARATH (e_value=4e-14) Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2;; (*TAIR) AT3G61860.1 (e_value=3e-15) | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:22900311-22902159 REVERSE LENGTH=264;; (*ITAG) Solyc01g096180.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:79034638-79037851 transcript_region:SL2.40ch01:79034638..79037851- go_terms:GO:0005515 functional_description:"Arginine/serine-rich splicing factor 31 (AHRD V1 **-- D7LSQ1_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0005515 NbS00002028g0013.1 protein NbS00015339g0008.1 protein NbS00013076g0105.1 protein NbS00017198g0002.1 protein NbS00017198g0003.1 protein ; (*TAIR) AT2G37990.1 (e_value=2e-13) | Symbols: | ribosome biogenesis regulatory protein (RRS1) family protein | chr2:15900713-15903028 FORWARD LENGTH=318;; (*ITAG) Solyc12g006550.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1059635-1063850 transcript_region:SL2.40ch12:1059635..1063850+ go_terms:GO:0005634 functional_description:"Ribosome biogenesis regulatory protein homolog (AHRD V1 ***- B5XEG4_SALSA); contains Interpro domain(s) IPR007023 Ribosomal biogenesis regulatory protein "; GO:0005634 NbS00017198g0004.1 protein NbS00024870g0003.1 protein ; (*GB) gi|225461724|ref|XP_002285514.1| (e_value=3e-56) PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera];; (*SWP) sp|P38379|SC61A_PYRSA (e_value=9e-47) Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1;; (*TAIR) AT2G34250.2 (e_value=1e-58) | Symbols: | SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475;; (*ITAG) Solyc10g007390.2.1 (e_value=9e-62) genomic_reference:SL2.40ch10 gene_region:1761545-1765548 transcript_region:SL2.40ch10:1761545..1765548- go_terms:GO:0043022,GO:0015450 functional_description:"Protein transport protein SEC61 alpha subunit (AHRD V1 ***- D3B1K5_POLPA); contains Interpro domain(s) IPR002208 SecY protein "; GO:0043022,GO:0015450 NbS00016600g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=9e-29) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00016600g0003.1 protein NbS00011550g0004.1 protein NbS00011550g0005.1 protein NbS00028467g0002.1 protein NbS00018276g0003.1 protein ; (*GB) gi|359478267|ref|XP_002274006.2| (e_value=8e-20) PREDICTED: uncharacterized protein LOC100255929 [Vitis vinifera];; (*ITAG) Solyc03g062900.2.1 (e_value=4e-61) genomic_reference:SL2.40ch03 gene_region:29800086-29805392 transcript_region:SL2.40ch03:29800086..29805392+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018276g0005.1 protein ; (*GB) gi|255601872|ref|XP_002537770.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis]; NbS00001968g0005.1 protein NbS00002494g0016.1 protein ; (*GB) gi|224059108|ref|XP_002299719.1| (e_value=8e-27) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M817|PTR6_ARATH (e_value=8e-23) Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1;; (*TAIR) AT1G52190.1 (e_value=6e-24) | Symbols: | Major facilitator superfamily protein | chr1:19434671-19438673 FORWARD LENGTH=607;; (*ITAG) Solyc03g120550.2.1 (e_value=3e-34) genomic_reference:SL2.40ch03 gene_region:62974314-62979152 transcript_region:SL2.40ch03:62974314..62979152+ go_terms:GO:0080054,GO:0042936 functional_description:"Peptide transporter 1 (AHRD V1 **-* Q7XAC3_VICFA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00002494g0008.1 protein ; (*ITAG) Solyc02g084960.1.1 (e_value=6e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch02 gene_region:42572352-42573101 transcript_region:SL2.40ch02:42572352..42573101- functional_description:"Genomic DNA chromosome 5 TAC clone K1F13 (AHRD V1 ***- Q9FJZ5_ARATH)"; NbS00034251g0009.1 protein NbS00034251g0010.1 protein NbS00017819g0005.1 protein ; (*ITAG) Solyc12g049230.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46080723-46092167 transcript_region:SL2.40ch12:46080723..46092167+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q69NN2_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00005045g0007.1 protein NbS00005045g0009.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016362g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-19) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc01g067450.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:68529763-68532921 transcript_region:SL2.40ch01:68529763..68532921- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00016362g0003.1 protein NbS00050940g0007.1 protein NbS00003280g0005.1 protein NbS00019616g0003.1 protein NbS00019616g0005.1 protein NbS00045256g0004.1 protein ; (*GB) gi|297737908|emb|CBI27109.3| (e_value=2e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SX33|ALA9_ARATH (e_value=2e-48) Putative phospholipid-transporting ATPase 9 OS=Arabidopsis thaliana GN=ALA9 PE=2 SV=1;; (*TAIR) AT1G68710.1 (e_value=1e-49) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200;; (*ITAG) Solyc05g010120.2.1 (e_value=1e-61) genomic_reference:SL2.40ch05 gene_region:4302127-4308688 transcript_region:SL2.40ch05:4302127..4308688+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1HB29_PARBA); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00045256g0005.1 protein ; (*GB) gi|224089372|ref|XP_002308709.1| (e_value=7e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZ52|PP344_ARATH (e_value=7e-33) Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1;; (*TAIR) AT4G31850.1 (e_value=5e-34) | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112;; (*ITAG) Solyc04g015440.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:5628290-5631920 transcript_region:SL2.40ch04:5628290..5631920+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00010663g0008.1 protein ; (*GB) gi|224114253|ref|XP_002332412.1| (e_value=5e-21) predicted protein [Populus trichocarpa]; NbS00010663g0009.1 protein NbS00023789g0003.1 protein NbS00036902g0006.1 protein ; (*GB) gi|162568920|gb|ABY19386.1| (e_value=7e-40) putative red chlorophyll catabolite reductase [Nicotiana tabacum];; (*SWP) sp|Q8LDU4|RCCR_ARATH (e_value=5e-17) Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2;; (*TAIR) AT4G37000.1 (e_value=4e-18) | Symbols: ACD2, ATRCCR | accelerated cell death 2 (ACD2) | chr4:17442627-17443762 FORWARD LENGTH=319;; (*ITAG) Solyc03g044470.2.1 (e_value=7e-34) genomic_reference:SL2.40ch03 gene_region:13305345-13308989 transcript_region:SL2.40ch03:13305345..13308989+ go_terms:GO:0051743 functional_description:"Red chlorophyll catabolite reductase (Fragment) (AHRD V1 **** Q1ELT8_SOLLC); contains Interpro domain(s) IPR009439 Red chlorophyll catabolite reductase "; GO:0051743 NbS00054936g0004.1 protein NbS00054936g0006.1 protein NbS00010920g0004.1 protein NbS00010920g0005.1 protein NbS00033922g0002.1 protein NbS00021714g0002.1 protein NbS00021714g0003.1 protein NbS00012916g0003.1 protein NbS00012916g0005.1 protein ; (*GB) gi|225463149|ref|XP_002266845.1| (e_value=6e-44) PREDICTED: enhancer of polycomb homolog 2 [Vitis vinifera];; (*TAIR) AT1G16690.1 (e_value=4e-28) | Symbols: | Enhancer of polycomb-like transcription factor protein | chr1:5706458-5709371 FORWARD LENGTH=439;; (*ITAG) Solyc02g032300.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:18822352-18837732 transcript_region:SL2.40ch02:18822352..18837732+ go_terms:GO:0003700 functional_description:"Enhancer of polycomb-like protein (AHRD V1 ***- B9N5C9_POPTR); contains Interpro domain(s) IPR019542 Enhancer of polycomb-like "; GO:0003700 NbS00010813g0001.1 protein ; (*GB) gi|30013681|gb|AAP03883.1| (e_value=1e-23) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*ITAG) Solyc06g007190.2.1 (e_value=1e-24) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbC25653349g0002.1 protein NbS00021817g0003.1 protein NbS00000414g0007.1 protein ; (*ITAG) Solyc02g077410.2.1 (e_value=3e-16) genomic_reference:SL2.40ch02 gene_region:36930997-36935490 transcript_region:SL2.40ch02:36930997..36935490- functional_description:"heat-and acid-stable phosphoprotein (AHRD V1 *-*- B5X267_SALSA); contains Interpro domain(s) IPR019380 Casein kinase substrate, phosphoprotein PP28 "; NbS00000414g0008.1 protein NbS00000250g0004.1 protein NbS00030874g0002.1 protein NbS00014865g0007.1 protein NbS00014865g0008.1 protein NbS00001852g0011.1 protein NbS00001852g0014.1 protein NbS00027820g0004.1 protein NbS00001943g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=6e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00001919g0006.1 protein NbS00015570g0005.1 protein ; (*GB) gi|225430549|ref|XP_002285591.1| (e_value=5e-86) PREDICTED: eukaryotic translation initiation factor 3 subunit B [Vitis vinifera];; (*SWP) sp|Q9C5Z1|EIF3B_ARATH (e_value=1e-76) Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1;; (*TAIR) AT5G25780.1 (e_value=6e-78) | Symbols: EIF3B-2, EIF3B, ATEIF3B-2 | eukaryotic translation initiation factor 3B-2 | chr5:8973420-8976758 REVERSE LENGTH=714;; (*ITAG) Solyc01g088370.2.1 (e_value=1e-95) genomic_reference:SL2.40ch01 gene_region:74897598-74903074 transcript_region:SL2.40ch01:74897598..74903074+ go_terms:GO:0032947,GO:0003743 functional_description:"Eukaryotic translation initiation factor 3 subunit B (AHRD V1 **** B2VZ72_PYRTR); contains Interpro domain(s) IPR011400 Translation initiation factor eIF-3b "; GO:0032947,GO:0003743 NbS00015570g0008.1 protein ; (*GB) gi|359480059|ref|XP_002269886.2| (e_value=8e-36) PREDICTED: uncharacterized protein LOC100249779 [Vitis vinifera];; (*TAIR) AT5G32470.1 (e_value=6e-20) | Symbols: | Haem oxygenase-like, multi-helical | chr5:12085328-12088569 REVERSE LENGTH=617;; (*ITAG) Solyc09g064510.2.1 (e_value=5e-56) genomic_reference:SL2.40ch09 gene_region:57382052-57386217 transcript_region:SL2.40ch09:57382052..57386217+ functional_description:"Transcriptional activator TenA family (AHRD V1 *-*- Q117V2_TRIEI); contains Interpro domain(s) IPR004305 TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C "; NbS00024329g0003.1 protein NbS00025454g0005.1 protein NbS00025454g0007.1 protein NbS00015540g0003.1 protein NbS00028207g0003.1 protein NbS00028207g0005.1 protein NbS00012405g0001.1 protein NbS00021956g0005.1 protein NbS00033010g0003.1 protein NbS00010692g0012.1 protein NbS00010692g0013.1 protein NbS00010692g0010.1 protein NbS00054377g0002.1 protein NbS00009205g0003.1 protein ; (*ITAG) Solyc10g074900.1.1 (e_value=1e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:57929897-57941645 transcript_region:SL2.40ch10:57929897..57941645- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00009205g0204.1 protein NbS00009205g0205.1 protein NbS00009205g0206.1 protein NbS00009205g0208.1 protein NbS00022079g0001.1 protein NbS00022079g0002.1 protein NbS00013936g0002.1 protein ; (*GB) gi|218197781|gb|EEC80208.1| (e_value=2e-29) hypothetical protein OsI_22102 [Oryza sativa Indica Group];; (*SWP) sp|O80770|SPT52_ARATH (e_value=3e-23) Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2;; (*TAIR) AT2G34210.1 (e_value=3e-24) | Symbols: | Transcription elongation factor Spt5 | chr2:14445938-14450522 FORWARD LENGTH=989;; (*ITAG) Solyc04g064700.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00037761g0003.1 protein NbS00033240g0002.1 protein NbS00047675g0002.1 protein ; (*GB) gi|255556127|ref|XP_002519098.1| (e_value=1e-82) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9XIA4|CCS1_ARATH (e_value=3e-76) Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1;; (*TAIR) AT1G49380.1 (e_value=2e-77) | Symbols: | cytochrome c biogenesis protein family | chr1:18276794-18279204 FORWARD LENGTH=547;; (*ITAG) Solyc10g051200.1.1 (e_value=5e-126) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:47193947-47197659 transcript_region:SL2.40ch10:47193947..47197659- functional_description:"Cytochrome c biogenesis protein family (AHRD V1 ***- D7KE35_ARALY); contains Interpro domain(s) IPR007816 ResB-like "; NbS00012589g0004.1 protein NbS00017446g0004.1 protein ; (*ITAG) Solyc07g040680.2.1 (e_value=4e-16) genomic_reference:SL2.40ch07 gene_region:46702761-46704429 transcript_region:SL2.40ch07:46702761..46704429+ go_terms:GO:0005515,GO:0003700 functional_description:"Heat stress transcription factor A3 (AHRD V1 **** D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding "; GO:0005515,GO:0003700 NbS00023067g0013.1 protein NbS00023067g0007.1 protein NbS00000843g0006.1 protein NbS00041151g0005.1 protein NbS00007650g0002.1 protein NbS00007650g0003.1 protein NbS00007650g0004.1 protein NbS00007650g0107.1 protein NbS00007650g0109.1 protein NbS00010866g0003.1 protein NbS00033396g0003.1 protein NbS00009090g0017.1 protein NbS00009090g0009.1 protein NbS00053426g0003.1 protein ; (*GB) gi|224128974|ref|XP_002320469.1| (e_value=1e-46) chromatin remodeling complex subunit [Populus trichocarpa];; (*TAIR) AT1G05120.1 (e_value=4e-43) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc07g051960.1.1 (e_value=3e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57840226-57845152 transcript_region:SL2.40ch07:57840226..57845152+ go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00014253g0012.1 protein NbS00014253g0006.1 protein NbS00026071g0004.1 protein ; (*ITAG) Solyc10g079550.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60390237-60392568 transcript_region:SL2.40ch10:60390237..60392568- go_terms:GO:0005488 functional_description:"Mitochondria fission 1 protein (AHRD V1 ***- B6T224_MAIZE); contains Interpro domain(s) IPR016543 Tetratricopeptide repeat 11 Fission 1 protein "; GO:0005488 NbS00021994g0007.1 protein NbS00021271g0003.1 protein NbS00000404g0006.1 protein NbS00025715g0210.1 protein NbS00000704g0005.1 protein NbS00024275g0007.1 protein NbS00006354g0008.1 protein NbS00005412g0004.1 protein NbS00005412g0005.1 protein NbS00038880g0003.1 protein NbS00008248g0017.1 protein NbS00008248g0020.1 protein NbS00008248g0008.1 protein ; (*ITAG) Solyc05g014020.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:7518491-7521889 transcript_region:SL2.40ch05:7518491..7521889- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00007641g0006.1 protein NbS00007641g0107.1 protein NbS00041689g0002.1 protein NbS00005459g0005.1 protein ; (*GB) gi|297741630|emb|CBI32762.3| (e_value=7e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S8P6|PP180_ARATH (e_value=6e-30) Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1;; (*TAIR) AT2G32630.1 (e_value=5e-31) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=624;; (*ITAG) Solyc10g084080.1.1 (e_value=4e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63073717-63076087 transcript_region:SL2.40ch10:63073717..63076087+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LF08_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005459g0006.1 protein ; (*GB) gi|359481393|ref|XP_002276762.2| (e_value=4e-62) PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like [Vitis vinifera];; (*SWP) sp|Q8S8P6|PP180_ARATH (e_value=5e-59) Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1;; (*TAIR) AT2G32630.1 (e_value=4e-60) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=624;; (*ITAG) Solyc10g084080.1.1 (e_value=2e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63073717-63076087 transcript_region:SL2.40ch10:63073717..63076087+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LF08_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00005459g0009.1 protein ; (*GB) gi|359481393|ref|XP_002276762.2| (e_value=2e-96) PREDICTED: pentatricopeptide repeat-containing protein At2g32630-like [Vitis vinifera];; (*SWP) sp|Q8S8P6|PP180_ARATH (e_value=1e-73) Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1;; (*TAIR) AT2G32630.1 (e_value=9e-75) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr2:13844834-13846708 FORWARD LENGTH=624;; (*ITAG) Solyc10g084090.1.1 (e_value=7e-118) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63078128-63084428 transcript_region:SL2.40ch10:63078128..63084428+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LF08_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009727g0003.1 protein NbS00021507g0013.1 protein NbS00021507g0009.1 protein NbS00004912g0004.1 protein NbS00053785g0002.1 protein NbS00053785g0004.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00053785g0005.1 protein NbS00006496g0007.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=6e-20) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbC25621478g0001.1 protein ; (*GB) gi|93280154|gb|ABF06705.1| (e_value=1e-15) Joka8 [Nicotiana plumbaginifolia];; (*TAIR) AT4G30980.1 (e_value=2e-13) | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-15081606 REVERSE LENGTH=310;; (*ITAG) Solyc12g010170.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3285767-3293079 transcript_region:SL2.40ch12:3285767..3293079- go_terms:GO:0005634,GO:0045449 functional_description:"Transcription factor (AHRD V1 *-*- D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00018433g0005.1 protein ; (*ITAG) Solyc08g005860.2.1 (e_value=3e-13) genomic_reference:SL2.40ch08 gene_region:646066-655558 transcript_region:SL2.40ch08:646066..655558+ go_terms:GO:0030288 functional_description:"Putrescine-binding periplasmic protein (AHRD V1 *-*- A8FVZ2_SHESH); contains Interpro domain(s) IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein "; GO:0030288 NbS00004251g0011.1 protein NbS00004251g0013.1 protein NbS00004251g0014.1 protein NbS00004251g0015.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=5e-24) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00035596g0001.1 protein NbS00035596g0002.1 protein ; (*GB) gi|48057665|gb|AAT39964.1| (e_value=3e-38) Putative gag polyprotein, identical [Solanum demissum]; NbS00005147g0003.1 protein ; (*GB) gi|139387293|ref|YP_001123414.1| (e_value=1e-19) ribosomal protein L2 [Capsella bursa-pastoris];; (*SWP) sp|A4QKN3|RK2_CAPBU (e_value=3e-21) 50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1;; (*ITAG) ATCG01310.1 (e_value=6e-21) | Symbols: RPL2.2 | ribosomal protein L2 | chrC:152806-154312 FORWARD LENGTH=274;; (*ITAG) Solyc01g007630.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:1881329-1883387 transcript_region:SL2.40ch01:1881329..1883387- go_terms:GO:0005840,GO:0015934,GO:0000166 functional_description:"50S ribosomal protein L2 chloroplastic (AHRD V1 ***- A6YA71_9MAGN); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0005840,GO:0015934,GO:0000166 NbS00022949g0004.1 protein NbS00022949g0005.1 protein NbS00022949g0006.1 protein NbC25127544g0001.1 protein ; (*GB) gi|224134072|ref|XP_002321729.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc03g097550.2.1 (e_value=3e-28) genomic_reference:SL2.40ch03 gene_region:53324402-53332524 transcript_region:SL2.40ch03:53324402..53332524+ go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451,GO:0003723 NbS00013693g0014.1 protein NbS00021660g0003.1 protein NbS00030026g0007.1 protein NbS00046843g0003.1 protein NbS00046843g0004.1 protein ; (*ITAG) Solyc03g025630.2.1 (e_value=2e-16) genomic_reference:SL2.40ch03 gene_region:7408901-7415812 transcript_region:SL2.40ch03:7408901..7415812+ functional_description:"Tripeptidyl-peptidase 2 (AHRD V1 ***- TPP2_BOVIN)"; NbS00037340g0103.1 protein NbS00027258g0105.1 protein NbS00027258g0110.1 protein NbS00022844g0004.1 protein NbS00021398g0005.1 protein ; (*ITAG) Solyc11g044260.1.1 (e_value=5e-48) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:35201175-35222560 transcript_region:SL2.40ch11:35201175..35222560- go_terms:GO:0004867,GO:0016021 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- Q73FS4_WOLPM); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0004867,GO:0016021 NbS00016803g0003.1 protein NbS00014368g0013.1 protein NbS00005389g0104.1 protein NbS00031863g0004.1 protein NbS00000367g0104.1 protein NbS00000367g0105.1 protein NbS00000367g0108.1 protein NbS00005916g0002.1 protein NbC25474551g0001.1 protein ; (*GB) gi|357130405|ref|XP_003566839.1| (e_value=4e-25) PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Brachypodium distachyon];; (*SWP) sp|Q5YLB4|GYRB_NICBE (e_value=1e-26) DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1;; (*TAIR) AT5G04130.1 (e_value=6e-27) | Symbols: GYRB2 | DNA GYRASE B2 | chr5:1122084-1128031 REVERSE LENGTH=732;; (*ITAG) Solyc12g021230.1.1 (e_value=8e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14910466-14933796 transcript_region:SL2.40ch12:14910466..14933796+ go_terms:GO:0006265,GO:0005524,GO:0005694 functional_description:"DNA gyrase subunit B (AHRD V1 ***- Q8YLN3_ANASP); contains Interpro domain(s) IPR011557 DNA gyrase, subunit B "; GO:0006265,GO:0005524,GO:0005694 NbS00010617g0005.1 protein NbS00006460g0002.1 protein NbS00041294g0007.1 protein NbS00006178g0007.1 protein NbS00008188g0006.1 protein NbS00001301g0001.1 protein ; (*ITAG) Solyc06g010200.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:5385221-5398335 transcript_region:SL2.40ch06:5385221..5398335- functional_description:"Chromodomain helicase DNA-binding protein 4 (AHRD V1 *-*- D5LXF2_SCHMD)"; NbS00003610g0003.1 protein NbS00056559g0002.1 protein NbS00004580g0004.1 protein NbS00008481g0001.1 protein NbS00022978g0103.1 protein NbS00001054g0001.1 protein NbS00042271g0003.1 protein NbS00027066g0005.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=4e-22) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=8e-13) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00034318g0001.1 protein NbS00013194g0003.1 protein NbS00036562g0004.1 protein NbS00049376g0003.1 protein NbS00013167g0012.1 protein NbS00013167g0014.1 protein ; (*ITAG) Solyc08g068850.2.1 (e_value=3e-28) genomic_reference:SL2.40ch08 gene_region:55141195-55143483 transcript_region:SL2.40ch08:55141195..55143483- functional_description:"Proton pump interactor 1 (AHRD V1 ***- D5L6G0_SOLTU)"; NbS00013167g0006.1 protein NbS00018975g0006.1 protein ; (*GB) gi|1711509|sp|P49971.1|SR541_SOLLC (e_value=6e-22) RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54;; (*SWP) sp|P49971|SR541_SOLLC (e_value=2e-23) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT1G48900.1 (e_value=1e-22) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc03g116810.2.1 (e_value=6e-24) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00014969g0011.1 protein NbS00014969g0009.1 protein NbS00020705g0005.1 protein NbS00020025g0104.1 protein NbS00020025g0106.1 protein NbS00019987g0007.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=6e-23) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*SWP) sp|P69242|RPOT3_NICSY (e_value=2e-12) DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1;; (*TAIR) AT1G01090.1 (e_value=4e-21) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=7e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00019987g0008.1 protein ; (*TAIR) AT4G30920.1 (e_value=2e-13) | Symbols: | Cytosol aminopeptidase family protein | chr4:15046589-15049304 REVERSE LENGTH=583; NbS00007481g0003.1 protein NbS00005370g0007.1 protein ; (*ITAG) Solyc06g064640.2.1 (e_value=6e-15) genomic_reference:SL2.40ch06 gene_region:36668100-36682313 transcript_region:SL2.40ch06:36668100..36682313+ functional_description:"Alpha/beta hydrolase (AHRD V1 **-- D7W6X8_9FLAO); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00006501g0008.1 protein NbS00006256g0003.1 protein NbS00042612g0005.1 protein NbC24115748g0001.1 protein ; (*GB) gi|255538894|ref|XP_002510512.1| (e_value=8e-24) Myosin heavy chain, striated muscle, putative [Ricinus communis];; (*ITAG) Solyc04g081260.2.1 (e_value=3e-32) genomic_reference:SL2.40ch04 gene_region:62875381-62880736 transcript_region:SL2.40ch04:62875381..62880736+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00032580g0002.1 protein NbS00016358g0002.1 protein NbS00010061g0103.1 protein NbS00010061g0106.1 protein NbS00004820g0007.1 protein NbS00007142g0004.1 protein NbS00007142g0006.1 protein NbS00031912g0004.1 protein NbS00031912g0007.1 protein NbS00005744g0007.1 protein NbS00005744g0010.1 protein NbS00005744g0207.1 protein NbS00024599g0002.1 protein NbS00024341g0003.1 protein NbS00016863g0003.1 protein NbS00058931g0001.1 protein NbS00044590g0004.1 protein NbS00022476g0004.1 protein NbS00011965g0001.1 protein NbS00036739g0003.1 protein NbS00032594g0003.1 protein ; (*GB) gi|359485181|ref|XP_002278608.2| (e_value=1e-42) PREDICTED: probable ATP-dependent RNA helicase YTHDC2-like [Vitis vinifera];; (*SWP) sp|Q9H2U1|DHX36_HUMAN (e_value=1e-27) Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2;; (*TAIR) AT2G30800.1 (e_value=9e-42) | Symbols: HVT1, ATVT-1 | helicase in vascular tissue and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299;; (*ITAG) Solyc07g044930.2.1 (e_value=9e-49) genomic_reference:SL2.40ch07 gene_region:55294938-55308391 transcript_region:SL2.40ch07:55294938..55308391- go_terms:GO:0005515 functional_description:"ATP-dependent RNA helicase A (AHRD V1 ***- B0W816_CULQU); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0005515 NbS00032594g0005.1 protein NbS00049610g0003.1 protein NbS00005008g0007.1 protein NbS00011707g0003.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=2e-33) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00011707g0005.1 protein NbS00022720g0007.1 protein NbS00007665g0003.1 protein ; (*TAIR) AT1G06900.1 (e_value=3e-14) | Symbols: | Insulinase (Peptidase family M16) family protein | chr1:2115155-2120635 REVERSE LENGTH=1024;; (*ITAG) Solyc02g043860.2.1 (e_value=7e-19) genomic_reference:SL2.40ch02 gene_region:22693123-22723451 transcript_region:SL2.40ch02:22693123..22723451- go_terms:GO:0042803 functional_description:"Insulin degrading enzyme (AHRD V1 **-- Q8CGB9_MOUSE); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0042803 NbS00047845g0006.1 protein NbS00047845g0009.1 protein NbS00002570g0103.1 protein NbS00009055g0007.1 protein NbS00048469g0002.1 protein NbS00048469g0003.1 protein ; (*SWP) sp|P08834|NU1M_CITLA (e_value=3e-14) NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus GN=ND1 PE=2 SV=1;; (*ITAG) Solyc00g118690.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:16399967-16400227 transcript_region:SL2.40ch00:16399967..16400227+ go_terms:GO:0016020 functional_description:"NADH-ubiquinone oxidoreductase chain 1 (AHRD V1 ***- Q5MA12_TOBAC); contains Interpro domain(s) IPR001694 NADH:ubiquinone oxidoreductase, subunit 1 "; GO:0016020 NbS00048469g0005.1 protein NbS00008710g0009.1 protein NbS00003193g0002.1 protein NbS00008019g0106.1 protein NbS00008019g0108.1 protein NbS00011309g0205.1 protein NbS00028913g0009.1 protein ; (*GB) gi|359483606|ref|XP_002271969.2| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera];; (*TAIR) AT1G29370.1 (e_value=1e-12) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr1:10278080-10283024 REVERSE LENGTH=831;; (*ITAG) Solyc02g071180.2.1 (e_value=1e-71) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00031668g0005.1 protein NbS00003376g0005.1 protein NbS00037935g0003.1 protein NbS00009032g0005.1 protein NbS00007606g0003.1 protein NbS00019104g0004.1 protein ; (*GB) gi|297738639|emb|CBI27884.3| (e_value=7e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8L4M1|DWA1_ARATH (e_value=2e-34) WD repeat-containing protein DWA1 OS=Arabidopsis thaliana GN=DWA1 PE=1 SV=1;; (*TAIR) AT2G19430.1 (e_value=2e-35) | Symbols: DWA1, THO6, AtTHO6 | DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 | chr2:8415217-8417740 FORWARD LENGTH=367;; (*ITAG) Solyc07g040790.2.1 (e_value=3e-70) genomic_reference:SL2.40ch07 gene_region:47050369-47067990 transcript_region:SL2.40ch07:47050369..47067990- go_terms:GO:0005515,GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- B0C6X5_ACAM1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00057748g0003.1 protein NbS00050984g0003.1 protein NbS00050984g0004.1 protein NbS00022536g0006.1 protein NbS00034162g0004.1 protein ; (*ITAG) Solyc03g116040.2.1 (e_value=2e-14) genomic_reference:SL2.40ch03 gene_region:59616745-59620511 transcript_region:SL2.40ch03:59616745..59620511- go_terms:GO:0003824 functional_description:"Exostosin family-like protein (AHRD V1 **-- Q6Z527_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00034162g0005.1 protein ; (*GB) gi|297733976|emb|CBI15223.3| (e_value=5e-60) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q3EAR7|GLYT2_ARATH (e_value=5e-14) Probable glycosyltransferase At3g42180 OS=Arabidopsis thaliana GN=At3g42180 PE=2 SV=2;; (*TAIR) AT3G45400.1 (e_value=7e-53) | Symbols: | exostosin family protein | chr3:16651963-16653479 FORWARD LENGTH=475;; (*ITAG) Solyc03g116040.2.1 (e_value=1e-69) genomic_reference:SL2.40ch03 gene_region:59616745-59620511 transcript_region:SL2.40ch03:59616745..59620511- go_terms:GO:0003824 functional_description:"Exostosin family-like protein (AHRD V1 **-- Q6Z527_ORYSJ); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00004319g0003.1 protein NbS00004319g0004.1 protein NbS00004319g0005.1 protein NbS00011691g0010.1 protein NbS00001161g0107.1 protein NbS00001161g0203.1 protein NbS00001161g0303.1 protein NbS00026410g0004.1 protein NbS00013663g0004.1 protein NbS00034429g0001.1 protein ; (*GB) gi|224069559|ref|XP_002326373.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43630.1 (e_value=7e-17) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18096255-18097344 FORWARD LENGTH=274;; (*ITAG) Solyc04g054460.2.1 (e_value=4e-41) genomic_reference:SL2.40ch04 gene_region:51700624-51707012 transcript_region:SL2.40ch04:51700624..51707012- functional_description:"Glycine-rich protein (AHRD V1 ***- D7LWF3_ARALY)"; NbS00007512g0009.1 protein ; (*GB) gi|110349562|gb|ABG73256.1| (e_value=2e-32) class III HD-Zip protein HDZ32A [Austrobaileya scandens];; (*SWP) sp|Q39123|ATHB8_ARATH (e_value=2e-27) Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1;; (*TAIR) AT4G32880.1 (e_value=2e-28) | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8 | chr4:15863587-15867822 REVERSE LENGTH=833;; (*ITAG) Solyc08g066500.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:52415522-52421037 transcript_region:SL2.40ch08:52415522..52421037- go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00058876g0001.1 protein NbS00024957g0003.1 protein NbS00047884g0002.1 protein ; (*GB) gi|224138074|ref|XP_002322723.1| (e_value=6e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=4e-17) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1 PE=2 SV=1;; (*ITAG) Solyc11g066680.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49531533-49532927 transcript_region:SL2.40ch11:49531533..49532927+ go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-6 (AHRD V1 *--- UD16_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00009128g0012.1 protein NbS00060696g0001.1 protein NbS00017829g0009.1 protein ; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-18) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc12g019720.1.1 (e_value=5e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:11182398-11185142 transcript_region:SL2.40ch12:11182398..11185142+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00032921g0011.1 protein NbS00057428g0002.1 protein NbS00002801g0002.1 protein NbS00003431g0112.1 protein NbS00014086g0003.1 protein NbS00001407g0001.1 protein ; (*GB) gi|225445848|ref|XP_002278056.1| (e_value=3e-36) PREDICTED: signal recognition particle receptor subunit alpha [Vitis vinifera];; (*TAIR) AT4G30600.1 (e_value=3e-37) | Symbols: | signal recognition particle receptor alpha subunit family protein | chr4:14938142-14940600 REVERSE LENGTH=634;; (*ITAG) Solyc12g009990.1.1 (e_value=3e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3132677-3136254 transcript_region:SL2.40ch12:3132677..3136254+ go_terms:GO:0017111,GO:0006614,GO:0005785 functional_description:"Signal recognition particle protein (AHRD V1 *-*- C1GCL3_PARBD); contains Interpro domain(s) IPR007222 Signal recognition particle receptor, alpha subunit, N-terminal "; GO:0017111,GO:0006614,GO:0005785 NbS00043607g0002.1 protein NbS00043607g0003.1 protein NbS00042300g0001.1 protein NbS00017693g0003.1 protein NbS00012006g0105.1 protein NbS00037732g0003.1 protein NbS00012063g0006.1 protein NbS00039920g0008.1 protein ; (*GB) gi|255560830|ref|XP_002521428.1| (e_value=4e-142) beta-galactosidase, putative [Ricinus communis];; (*SWP) sp|Q10NX8|BGAL6_ORYSJ (e_value=3e-114) Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2;; (*TAIR) AT2G28470.1 (e_value=6e-115) | Symbols: BGAL8 | beta-galactosidase 8 | chr2:12169047-12173164 REVERSE LENGTH=852;; (*ITAG) Solyc02g078950.2.1 (e_value=2e-151) genomic_reference:SL2.40ch02 gene_region:38135936-38141941 transcript_region:SL2.40ch02:38135936..38141941- go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9HYZ2_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00014364g0014.1 protein NbS00014364g0020.1 protein ; (*GB) gi|297812683|ref|XP_002874225.1| (e_value=9e-42) ABC1 family protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G24810.1 (e_value=2e-40) | Symbols: | ABC1 family protein | chr5:8516902-8522616 REVERSE LENGTH=1009;; (*ITAG) Solyc08g074280.2.1 (e_value=6e-89) genomic_reference:SL2.40ch08 gene_region:55542402-55560775 transcript_region:SL2.40ch08:55542402..55560775- functional_description:"ABC-1 domain protein (AHRD V1 *--- C9RAY2_AMMDK); contains Interpro domain(s) IPR012338 Beta-lactamase-type transpeptidase fold "; NbS00014364g0021.1 protein NbS00021913g0006.1 protein NbS00001842g0004.1 protein NbS00004989g0005.1 protein NbS00004989g0007.1 protein NbS00003756g0008.1 protein ; (*ITAG) Solyc08g067840.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:54082270-54090382 transcript_region:SL2.40ch08:54082270..54090382+ go_terms:GO:0019898 functional_description:"PsbP domain-containing protein 5, chloroplastic (AHRD V1 **-- PPD5_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "; GO:0019898 NbS00027125g0001.1 protein NbS00041967g0003.1 protein NbS00012793g0002.1 protein NbS00012793g0003.1 protein NbS00012793g0104.1 protein NbS00012793g0106.1 protein NbS00030630g0003.1 protein NbS00030630g0004.1 protein NbS00030630g0007.1 protein NbS00016072g0003.1 protein ; (*GB) gi|225453175|ref|XP_002275302.1| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100255271 isoform 1 [Vitis vinifera];; (*ITAG) Solyc02g091530.2.1 (e_value=9e-46) genomic_reference:SL2.40ch02 gene_region:47375352-47380189 transcript_region:SL2.40ch02:47375352..47380189+ go_terms:GO:0030247 functional_description:"5'-AMP-activated protein kinase subunit beta-1 (Fragment) (AHRD V1 *-*- AAKB1_PIG)"; GO:0030247 NbS00004222g0002.1 protein NbS00026711g0005.1 protein NbS00009244g0009.1 protein NbS00000193g0014.1 protein NbS00000193g0010.1 protein NbS00032439g0003.1 protein NbS00047149g0003.1 protein NbS00036220g0002.1 protein ; (*GB) gi|224053525|ref|XP_002297856.1| (e_value=5e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT2G03730.2 (e_value=6e-19) | Symbols: ACR5 | ACT domain repeat 5 | chr2:1137820-1139809 REVERSE LENGTH=456;; (*ITAG) Solyc01g010000.2.1 (e_value=3e-38) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00005083g0003.1 protein NbS00030971g0008.1 protein NbS00011167g0008.1 protein NbS00011167g0009.1 protein NbS00005830g0103.1 protein NbS00005830g0104.1 protein NbS00005830g0203.1 protein NbS00005830g0206.1 protein NbS00014318g0002.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=9e-37) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00048245g0001.1 protein NbS00048245g0002.1 protein NbS00048245g0004.1 protein NbS00031679g0006.1 protein NbS00018203g0003.1 protein ; (*GB) gi|225459925|ref|XP_002264688.1| (e_value=7e-32) PREDICTED: protein BEARSKIN1 [Vitis vinifera];; (*SWP) sp|Q9SV87|BRN2_ARATH (e_value=7e-15) Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1;; (*TAIR) AT4G10350.1 (e_value=5e-16) | Symbols: ANAC070, BRN2, NAC070 | NAC domain containing protein 70 | chr4:6415287-6416829 REVERSE LENGTH=341;; (*ITAG) Solyc06g063430.1.1 (e_value=8e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:36497407-36500202 transcript_region:SL2.40ch06:36497407..36500202- go_terms:GO:0003700 functional_description:"NAC domain protein IPR003441 (AHRD V1 ***- B9N1Q0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00035162g0001.1 protein NbS00023571g0002.1 protein ; (*GB) gi|359492711|ref|XP_002280739.2| (e_value=8e-12) PREDICTED: uncharacterized protein LOC100254089 [Vitis vinifera];; (*ITAG) Solyc07g032510.2.1 (e_value=7e-56) genomic_reference:SL2.40ch07 gene_region:39239627-39259864 transcript_region:SL2.40ch07:39239627..39259864+ functional_description:"Microspherule protein 1 (AHRD V1 *-*- Q5BJR5_RAT); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbC24455010g0001.1 protein ; (*GB) gi|225442898|ref|XP_002263979.1| (e_value=2e-37) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=4e-31) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=3e-32) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc03g117520.1.1 (e_value=2e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60711082-60712938 transcript_region:SL2.40ch03:60711082..60712938+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00002721g0004.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=5e-13) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00002721g0005.1 protein NbS00002721g0007.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-28) hypothetical protein [Nicotiana tabacum]; NbS00007133g0007.1 protein NbS00007133g0103.1 protein NbS00007133g0104.1 protein NbS00005845g0002.1 protein NbS00005845g0003.1 protein NbS00036997g0006.1 protein NbS00024919g0008.1 protein NbC25049237g0003.1 protein ; (*GB) gi|225434325|ref|XP_002276254.1| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100248527 [Vitis vinifera];; (*TAIR) AT2G30500.2 (e_value=2e-13) | Symbols: | Kinase interacting (KIP1-like) family protein | chr2:12998329-13000072 REVERSE LENGTH=517;; (*ITAG) Solyc08g077680.2.1 (e_value=4e-52) genomic_reference:SL2.40ch08 gene_region:58750403-58754684 transcript_region:SL2.40ch08:58750403..58754684- functional_description:"Kinase interacting protein 1-like (AHRD V1 *-*- Q9AS78_ORYSJ); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00020788g0005.1 protein NbS00020788g0007.1 protein NbS00018431g0005.1 protein NbS00011753g0006.1 protein NbS00035296g0003.1 protein ; (*GB) gi|676884|dbj|BAA06151.1| (e_value=2e-25) pit2 [Nicotiana tabacum];; (*TAIR) AT1G71950.1 (e_value=1e-23) | Symbols: | Proteinase inhibitor, propeptide | chr1:27080453-27081573 REVERSE LENGTH=136;; (*ITAG) Solyc06g065370.2.1 (e_value=6e-30) genomic_reference:SL2.40ch06 gene_region:37187770-37191057 transcript_region:SL2.40ch06:37187770..37191057+ go_terms:GO:0043086 functional_description:"Subtilase family protein (AHRD V1 **-- D7KTL9_ARALY); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0043086 NbS00035296g0005.1 protein NbS00014616g0001.1 protein NbS00035545g0002.1 protein NbS00010846g0003.1 protein ; (*ITAG) Solyc01g049640.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:40678900-40679439 transcript_region:SL2.40ch01:40678900..40679439+ functional_description:"Polynucleotidyl transferase Ribonuclease H fold (AHRD V1 ***- A2Q617_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbC24619590g0001.1 protein ; (*GB) gi|224094662|ref|XP_002310195.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SVM0|Y3078_ARATH (e_value=1e-17) BTB/POZ domain-containing protein At3g50780 OS=Arabidopsis thaliana GN=At3g50780 PE=2 SV=1;; (*TAIR) AT3G50780.1 (e_value=8e-19) | Symbols: | BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G63850.1); Has 298 Blast hits to 298 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:18875662-18877341 REVERSE LENGTH=520;; (*ITAG) Solyc02g089950.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46214574-46218291 transcript_region:SL2.40ch02:46214574..46218291- functional_description:"Os12g0596600 protein (Fragment) (AHRD V1 *-*- Q0IM59_ORYSJ)"; NbS00026487g0005.1 protein NbS00026487g0007.1 protein ; (*ITAG) Solyc08g062700.2.1 (e_value=2e-18) genomic_reference:SL2.40ch08 gene_region:48997752-49017259 transcript_region:SL2.40ch08:48997752..49017259- go_terms:GO:0005634,GO:0006457 functional_description:"Peptidyl prolyl cis trans isomerase-like (AHRD V1 ***- Q5ZB85_ORYSJ); contains Interpro domain(s) IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type "; GO:0005634,GO:0006457 NbS00026487g0008.1 protein ; (*ITAG) Solyc01g098440.1.1 (e_value=8e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80719926-80724116 transcript_region:SL2.40ch01:80719926..80724116- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine protein kinase-like (AHRD V1 **** Q9FGC3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00026630g0006.1 protein NbS00026630g0007.1 protein NbS00026630g0105.1 protein NbS00026630g0106.1 protein NbS00026630g0202.1 protein NbS00014725g0010.1 protein NbS00048682g0001.1 protein NbS00029284g0004.1 protein ; (*GB) gi|357440273|ref|XP_003590414.1| (e_value=8e-33) Protein CHUP1 [Medicago truncatula];; (*TAIR) AT2G36650.1 (e_value=3e-12) | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:15359994-15361194 FORWARD LENGTH=373;; (*ITAG) Solyc09g008660.2.1 (e_value=2e-49) genomic_reference:SL2.40ch09 gene_region:2112961-2115073 transcript_region:SL2.40ch09:2112961..2115073- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; NbS00006288g0007.1 protein NbS00006288g0008.1 protein NbS00019985g0010.1 protein NbS00034361g0003.1 protein NbS00025298g0005.1 protein NbS00020382g0001.1 protein NbS00036380g0010.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-32) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015152g0004.1 protein NbS00015152g0005.1 protein NbS00015152g0009.1 protein NbS00050470g0001.1 protein NbS00040156g0001.1 protein NbS00040156g0002.1 protein NbS00033180g0001.1 protein NbS00000191g0111.1 protein NbS00000191g0112.1 protein NbS00000191g0106.1 protein NbS00023412g0005.1 protein ; (*GB) gi|316996024|dbj|BAD83536.2| (e_value=4e-48) cytochrome c maturation protein CcmFc [Nicotiana tabacum];; (*SWP) sp|P93286|CCMF_ARATH (e_value=5e-32) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=8e-33) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc00g052430.2.1 (e_value=6e-51) genomic_reference:SL2.40ch00 gene_region:13763880-13766793 transcript_region:SL2.40ch00:13763880..13766793+ functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3C4_CITLA)"; NbS00029426g0104.1 protein NbS00029426g0108.1 protein NbS00001034g0004.1 protein ; (*GB) gi|224132078|ref|XP_002321250.1| (e_value=2e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q944A7|Y4523_ARATH (e_value=1e-35) Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1;; (*TAIR) AT5G46570.1 (e_value=3e-40) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00022356g0107.1 protein NbC23532623g0001.1 protein ; (*GB) gi|334185494|ref|NP_001189940.1| (e_value=9e-28) Alpha amylase family protein [Arabidopsis thaliana];; (*SWP) sp|D2WL32|GLGB3_ARATH (e_value=3e-29) 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1;; (*TAIR) AT3G20440.3 (e_value=2e-30) | Symbols: EMB2729 | Alpha amylase family protein | chr3:7123603-7130364 REVERSE LENGTH=897;; (*ITAG) Solyc07g064830.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:64039012-64053950 transcript_region:SL2.40ch07:64039012..64053950+ go_terms:GO:0003844 functional_description:"1 4-alpha-glucan branching enzyme (AHRD V1 **** C5FVR4_NANOT); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0003844 NbS00007969g0001.1 protein ; (*GB) gi|359492792|ref|XP_002278117.2| (e_value=2e-13) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera];; (*ITAG) Solyc04g012100.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4412215-4415699 transcript_region:SL2.40ch04:4412215..4415699+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00014958g0006.1 protein NbS00006817g0002.1 protein ; (*GB) gi|356549385|ref|XP_003543074.1| (e_value=4e-51) PREDICTED: UPF0559 protein-like [Glycine max];; (*SWP) sp|Q54X16|U559_DICDI (e_value=2e-29) UPF0559 protein OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2;; (*TAIR) AT1G61150.1 (e_value=1e-49) | Symbols: | LisH and RanBPM domains containing protein | chr1:22542928-22544355 FORWARD LENGTH=243;; (*ITAG) Solyc03g006580.2.1 (e_value=2e-55) genomic_reference:SL2.40ch03 gene_region:1153790-1163207 transcript_region:SL2.40ch03:1153790..1163207+ go_terms:GO:0005515 functional_description:"Ran-binding proteins 9/10 homolog (AHRD V1 *--* RBP9X_DROME); contains Interpro domain(s) IPR019589 Ran binding protein, CRA domain "; GO:0005515 NbS00018049g0012.1 protein NbS00010179g0006.1 protein NbS00014007g0005.1 protein NbS00014697g0004.1 protein NbS00034779g0003.1 protein NbS00022396g0001.1 protein NbS00034056g0002.1 protein ; (*GB) gi|297746170|emb|CBI16226.3| (e_value=1e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5ZL98|RPC1_CHICK (e_value=1e-49) DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1;; (*TAIR) AT5G60040.2 (e_value=2e-50) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=7e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00013845g0015.1 protein NbS00013845g0017.1 protein NbS00043850g0006.1 protein NbS00034097g0001.1 protein ; (*GB) gi|224133400|ref|XP_002321558.1| (e_value=1e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SJT9|COPA2_ARATH (e_value=3e-37) Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1;; (*TAIR) AT2G21390.1 (e_value=2e-38) | Symbols: | Coatomer, alpha subunit | chr2:9152428-9156577 FORWARD LENGTH=1218;; (*ITAG) Solyc04g080980.2.1 (e_value=3e-40) genomic_reference:SL2.40ch04 gene_region:62635525-62641108 transcript_region:SL2.40ch04:62635525..62641108- go_terms:GO:0005515 functional_description:"Coatomer alpha subunit-like protein (AHRD V1 **-- Q70I39_LOTJA); contains Interpro domain(s) IPR016391 Coatomer, alpha subunit "; GO:0005515 NbS00055429g0002.1 protein NbS00023685g0003.1 protein NbS00056337g0003.1 protein NbS00023452g0003.1 protein NbS00029788g0001.1 protein NbS00029817g0007.1 protein NbS00010746g0001.1 protein NbS00042793g0005.1 protein NbS00012736g0005.1 protein NbS00012736g0009.1 protein NbS00026574g0001.1 protein NbS00024506g0001.1 protein NbS00006899g0011.1 protein NbS00006899g0006.1 protein NbS00014414g0002.1 protein NbS00024228g0005.1 protein NbS00016918g0007.1 protein NbS00005457g0001.1 protein NbS00005457g0302.1 protein NbS00043662g0002.1 protein ; (*GB) gi|296089862|emb|CBI39681.3| (e_value=5e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VYE4|PTR12_ARATH (e_value=4e-25) Probable peptide/nitrate transporter At1g27040 OS=Arabidopsis thaliana GN=At1g27040 PE=2 SV=1;; (*TAIR) AT1G27040.2 (e_value=3e-26) | Symbols: | Major facilitator superfamily protein | chr1:9386893-9389838 REVERSE LENGTH=563;; (*ITAG) Solyc10g039290.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:20937256-20939892 transcript_region:SL2.40ch10:20937256..20939892- go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9LSE8_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00018955g0003.1 protein NbS00030823g0004.1 protein NbS00030823g0006.1 protein NbS00014740g0003.1 protein NbS00030157g0002.1 protein NbS00030157g0105.1 protein NbS00030157g0107.1 protein NbS00030157g0108.1 protein NbS00010257g0103.1 protein NbS00010257g0104.1 protein NbS00003592g0005.1 protein NbS00032501g0003.1 protein NbS00034332g0004.1 protein NbS00034332g0008.1 protein NbS00051960g0001.1 protein ; (*ITAG) Solyc01g067130.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:67899839-67900307 transcript_region:SL2.40ch01:67899839..67900307- go_terms:GO:0003700 functional_description:"Nuclear transcription factor Y subunit B-3 (AHRD V1 **** B6SUG8_MAIZE); contains Interpro domain(s) IPR003957 Transcription factor, CBFA/NFYB, DNA topoisomerase "; GO:0003700 NbS00010861g0002.1 protein NbS00024637g0007.1 protein NbS00031144g0005.1 protein NbS00010087g0104.1 protein NbS00010087g0106.1 protein NbS00056080g0001.1 protein ; (*ITAG) Solyc12g096050.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63462666-63475970 transcript_region:SL2.40ch12:63462666..63475970- functional_description:"Kinase-START 1 (Fragment) (AHRD V1 *--- B9UY89_LOPEL); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00003065g0005.1 protein NbS00048367g0004.1 protein NbS00011927g0004.1 protein NbS00025395g0002.1 protein NbS00052411g0003.1 protein NbS00017079g0003.1 protein NbS00017079g0005.1 protein NbS00040780g0001.1 protein NbS00003281g0005.1 protein ; (*GB) gi|224083745|ref|XP_002307108.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G07710.1 (e_value=3e-19) | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:2453310-2455357 FORWARD LENGTH=468;; (*ITAG) Solyc12g036220.1.1 (e_value=4e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:29868498-29873746 transcript_region:SL2.40ch12:29868498..29873746+ go_terms:GO:0003676,GO:0005622 functional_description:"Exonuclease DNA polymerase III epsilon subunit family (AHRD V1 *-*- C7NIC3_KYTSD); contains Interpro domain(s) IPR006055 Exonuclease "; GO:0003676,GO:0005622 NbS00003281g0006.1 protein NbS00017139g0003.1 protein NbS00061852g0001.1 protein NbS00052901g0003.1 protein NbS00009170g0007.1 protein NbS00038533g0011.1 protein NbS00038533g0010.1 protein NbS00014863g0005.1 protein NbS00014863g0007.1 protein ; (*TAIR) AT4G30850.2 (e_value=1e-15) | Symbols: HHP2 | heptahelical transmembrane protein2 | chr4:15020540-15022278 REVERSE LENGTH=358;; (*ITAG) Solyc07g006020.2.1 (e_value=6e-36) genomic_reference:SL2.40ch07 gene_region:862865-866795 transcript_region:SL2.40ch07:862865..866795+ go_terms:GO:0004872,GO:0046872 functional_description:"Adiponectin receptor (AHRD V1 **** Q16FL3_AEDAE); contains Interpro domain(s) IPR004254 Hly-III related "; GO:0004872,GO:0046872 NbC25780041g0002.1 protein NbS00048279g0004.1 protein NbS00048279g0007.1 protein NbS00013619g0004.1 protein NbC23721530g0001.1 protein ; (*GB) gi|224060678|ref|XP_002300252.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT4G34280.1 (e_value=3e-16) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc01g107360.2.1 (e_value=2e-30) genomic_reference:SL2.40ch01 gene_region:86688549-86696639 transcript_region:SL2.40ch01:86688549..86696639+ go_terms:GO:0000166 functional_description:"Coatomer subunit beta' (AHRD V1 *--- COPB2_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbC23601447g0001.1 protein ; (*GB) gi|359490816|ref|XP_002271825.2| (e_value=1e-22) PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Vitis vinifera];; (*SWP) sp|Q7Y211|PP285_ARATH (e_value=1e-16) Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2;; (*TAIR) AT3G57430.1 (e_value=1e-17) | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21255731-21258403 REVERSE LENGTH=890;; (*ITAG) Solyc03g082830.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:46223670-46226040 transcript_region:SL2.40ch03:46223670..46226040- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L041_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00002939g0011.1 protein NbS00002939g0010.1 protein NbS00030305g0003.1 protein NbS00030305g0004.1 protein NbS00030305g0006.1 protein NbS00030305g0007.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002842g0002.1 protein NbS00002842g0003.1 protein NbS00016395g0008.1 protein NbS00009675g0004.1 protein NbS00009675g0005.1 protein NbS00009675g0006.1 protein NbS00020205g0003.1 protein NbS00016312g0010.1 protein ; (*GB) gi|224123728|ref|XP_002319150.1| (e_value=9e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G17980.1 (e_value=3e-27) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:5953596-5956745 FORWARD LENGTH=1049;; (*ITAG) Solyc01g065500.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:64136383-64139796 transcript_region:SL2.40ch01:64136383..64139796- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00024385g0003.1 protein ; (*GB) gi|297738315|emb|CBI27516.3| (e_value=2e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g007880.2.1 (e_value=7e-29) genomic_reference:SL2.40ch01 gene_region:2041549-2055134 transcript_region:SL2.40ch01:2041549..2055134- go_terms:GO:0005515 functional_description:"MORN repeat protein (AHRD V1 *--- D4V7H0_BACVU); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; GO:0005515 NbS00014644g0004.1 protein NbS00024462g0002.1 protein ; (*GB) gi|359477685|ref|XP_002285459.2| (e_value=5e-23) PREDICTED: oxidation resistance protein 1-like [Vitis vinifera];; (*TAIR) AT2G05590.2 (e_value=9e-22) | Symbols: | TLD-domain containing nucleolar protein | chr2:2067196-2068951 FORWARD LENGTH=303;; (*ITAG) Solyc09g090670.2.1 (e_value=7e-28) genomic_reference:SL2.40ch09 gene_region:65469158-65473532 transcript_region:SL2.40ch09:65469158..65473532- functional_description:"Oxidation resistance 1-like protein (AHRD V1 *--- Q6Z157_ORYSJ); contains Interpro domain(s) IPR006571 TLDc "; NbS00015230g0003.1 protein NbS00008238g0004.1 protein ; (*GB) gi|224077698|ref|XP_002305368.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRH7|Y3130_ARATH (e_value=3e-53) Receptor-like serine/threonine-protein kinase At3g01300 OS=Arabidopsis thaliana GN=At3g01300 PE=2 SV=1;; (*TAIR) AT3G28690.3 (e_value=8e-55) | Symbols: | Protein kinase superfamily protein | chr3:10755412-10757494 FORWARD LENGTH=425;; (*ITAG) Solyc01g010780.2.1 (e_value=2e-54) genomic_reference:SL2.40ch01 gene_region:5831702-5837276 transcript_region:SL2.40ch01:5831702..5837276- go_terms:GO:0005515,GO:0004674 functional_description:"ATP binding / serine-threonine kinase (AHRD V1 **** C5DB71_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00004624g0004.1 protein NbS00026802g0007.1 protein NbS00012150g0106.1 protein NbC24869955g0002.1 protein ; (*GB) gi|149228007|gb|ABR23001.1| (e_value=1e-36) NPR1 [Nicotiana attenuata];; (*TAIR) AT4G26120.1 (e_value=3e-13) | Symbols: | Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr4:13236448-13238487 FORWARD LENGTH=600;; (*ITAG) Solyc07g040690.2.1 (e_value=2e-35) genomic_reference:SL2.40ch07 gene_region:46706989-46722544 transcript_region:SL2.40ch07:46706989..46722544- go_terms:GO:0005515,GO:0016563 functional_description:"NPR1 protein (Fragment) (AHRD V1 ***- A8KRW4_CAPCH); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515,GO:0016563 NbS00048507g0002.1 protein NbS00008290g0003.1 protein ; (*ITAG) Solyc03g119580.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:62190256-62191413 transcript_region:SL2.40ch03:62190256..62191413- go_terms:GO:0003677,GO:0006355 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-*- B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00027560g0004.1 protein NbS00007877g0011.1 protein NbS00007877g0012.1 protein NbS00007877g0006.1 protein NbS00007877g0007.1 protein ; (*GB) gi|297741117|emb|CBI31848.3| (e_value=4e-127) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=1e-119) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=9e-121) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=2e-152) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00007877g0009.1 protein NbS00002704g0005.1 protein ; (*GB) gi|255570825|ref|XP_002526365.1| (e_value=3e-127) sumo ligase, putative [Ricinus communis];; (*SWP) sp|Q680Q4|SIZ1_ARATH (e_value=1e-112) E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2;; (*TAIR) AT5G60410.1 (e_value=6e-114) | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300671 FORWARD LENGTH=873;; (*ITAG) Solyc11g069160.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50843224-50855336 transcript_region:SL2.40ch11:50843224..50855336+ go_terms:GO:0003676,GO:0008270 functional_description:"Sumo ligase (AHRD V1 *--- Q1DH57_AEDAE); contains Interpro domain(s) IPR004181 Zinc finger, MIZ-type "; GO:0003676,GO:0008270 NbS00002704g0008.1 protein NbS00027672g0004.1 protein ; (*GB) gi|297815134|ref|XP_002875450.1| (e_value=9e-19) hypothetical protein ARALYDRAFT_484614 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G28370.1 (e_value=6e-19) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). | chr3:10620627-10623259 FORWARD LENGTH=292;; (*ITAG) Solyc02g087420.1.1 (e_value=8e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44453556-44456360 transcript_region:SL2.40ch02:44453556..44456360+ functional_description:"Genomic DNA chromosome 3 P1 clone MFJ20 (AHRD V1 ***- Q9LSJ7_ARATH)"; NbS00023009g0112.1 protein NbS00023009g0107.1 protein NbS00023009g0109.1 protein NbC23823928g0001.1 protein ; (*GB) gi|357140843|ref|XP_003571972.1| (e_value=2e-25) PREDICTED: sphingoid long-chain bases kinase 1-like [Brachypodium distachyon];; (*SWP) sp|Q9LRB0|LCBK1_ARATH (e_value=9e-20) Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1 PE=1 SV=1;; (*TAIR) AT5G23450.2 (e_value=7e-21) | Symbols: ATLCBK1, LCBK1 | long-chain base (LCB) kinase 1 | chr5:7905041-7908960 REVERSE LENGTH=763;; (*ITAG) Solyc01g096500.2.1 (e_value=1e-35) genomic_reference:SL2.40ch01 gene_region:79343169-79351925 transcript_region:SL2.40ch01:79343169..79351925- go_terms:GO:0017050 functional_description:"D-erythro-sphingosine kinase (AHRD V1 *-** D7MES6_ARALY); contains Interpro domain(s) IPR001206 Diacylglycerol kinase, catalytic region "; GO:0017050 NbS00031069g0003.1 protein NbS00031069g0004.1 protein NbS00043788g0002.1 protein NbS00024972g0006.1 protein NbS00004232g0008.1 protein NbC25449263g0001.1 protein ; (*GB) gi|255573202|ref|XP_002527530.1| (e_value=1e-18) cyclin, putative [Ricinus communis];; (*ITAG) Solyc04g008070.1.1 (e_value=4e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00039932g0002.1 protein NbS00010019g0012.1 protein NbS00010019g0009.1 protein NbS00007876g0005.1 protein NbS00025885g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-26) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013649g0006.1 protein ; (*GB) gi|147856590|emb|CAN82494.1| (e_value=8e-26) hypothetical protein VITISV_033043 [Vitis vinifera];; (*ITAG) Solyc03g121120.2.1 (e_value=1e-76) genomic_reference:SL2.40ch03 gene_region:63385722-63395284 transcript_region:SL2.40ch03:63385722..63395284- go_terms:GO:0008233 functional_description:"DNA repair protein radA (AHRD V1 ***- D4YAY4_BACTR); contains Interpro domain(s) IPR004504 DNA repair protein RadA "; GO:0008233 NbS00048615g0002.1 protein NbS00022688g0007.1 protein NbS00022688g0010.1 protein NbS00001640g0007.1 protein NbS00004091g0002.1 protein NbS00052593g0004.1 protein ; (*GB) gi|224053689|ref|XP_002297930.1| (e_value=6e-24) predicted protein [Populus trichocarpa]; NbS00027852g0002.1 protein NbS00018722g0009.1 protein NbS00019111g0001.1 protein NbS00056289g0008.1 protein NbS00008178g0014.1 protein NbS00030119g0002.1 protein ; (*ITAG) Solyc02g087470.2.1 (e_value=9e-17) genomic_reference:SL2.40ch02 gene_region:44479944-44480459 transcript_region:SL2.40ch02:44479944..44480459- functional_description:"Unknown Protein (AHRD V1)"; NbS00006535g0002.1 protein NbS00022012g0004.1 protein ; (*ITAG) Solyc09g065390.1.1 (e_value=1e-20) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch09 gene_region:59104428-59104982 transcript_region:SL2.40ch09:59104428..59104982- functional_description:"Expressed protein 3&apos-partial (Fragment) (AHRD V1 ***- Q75H88_ORYSJ)"; NbS00060684g0004.1 protein NbS00054854g0002.1 protein NbS00000136g0106.1 protein NbS00020357g0006.1 protein NbS00020357g0007.1 protein NbS00005680g0005.1 protein NbS00021270g0014.1 protein NbS00021270g0007.1 protein NbS00021270g0010.1 protein NbC23393118g0001.1 protein ; (*GB) gi|49240345|gb|AAT58045.1| (e_value=2e-29) high-affinity K+ transporter [Capsicum annuum];; (*SWP) sp|Q9M7K4|POT5_ARATH (e_value=2e-17) Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1;; (*TAIR) AT4G13420.1 (e_value=1e-18) | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 5 | chr4:7797038-7802174 REVERSE LENGTH=785;; (*ITAG) Solyc12g005680.1.1 (e_value=6e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:366519-371397 transcript_region:SL2.40ch12:366519..371397+ go_terms:GO:0016020 functional_description:"Potassium transporter family protein (AHRD V1 ***- D7KXB7_ARALY); contains Interpro domain(s) IPR018519 Potassium uptake protein, kup IPR003855 K+ potassium transporter "; GO:0016020 NbS00002709g0005.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002709g0006.1 protein NbS00023667g0003.1 protein NbS00003426g0002.1 protein ; (*GB) gi|359491311|ref|XP_002281720.2| (e_value=4e-16) PREDICTED: formin-like protein 6-like [Vitis vinifera];; (*TAIR) AT5G07780.1 (e_value=4e-14) | Symbols: | Actin-binding FH2 (formin homology 2) family protein | chr5:2479707-2482638 FORWARD LENGTH=464;; (*ITAG) Solyc03g115680.2.1 (e_value=3e-20) genomic_reference:SL2.40ch03 gene_region:59369069-59378559 transcript_region:SL2.40ch03:59369069..59378559+ go_terms:GO:0030036 functional_description:"Formin 2A (AHRD V1 ***- C7BGM8_PHYPA); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00004463g0003.1 protein NbS00026820g0002.1 protein NbS00014525g0005.1 protein NbS00013203g0003.1 protein NbS00016058g0004.1 protein NbS00004702g0003.1 protein NbS00004702g0005.1 protein NbS00000732g0005.1 protein NbS00000732g0006.1 protein ; (*GB) gi|255567104|ref|XP_002524534.1| (e_value=4e-26) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G33410.1 (e_value=2e-19) | Symbols: SAR1, NUP160, ATNUP160 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504;; (*ITAG) Solyc01g102540.2.1 (e_value=6e-49) genomic_reference:SL2.40ch01 gene_region:83081913-83093458 transcript_region:SL2.40ch01:83081913..83093458- go_terms:GO:0003993 functional_description:"Nucleoporin (AHRD V1 *-*- C0KG86_DROSI)"; GO:0003993 NbS00043993g0003.1 protein NbS00011165g0106.1 protein NbS00042207g0005.1 protein NbS00026649g0001.1 protein NbS00051072g0005.1 protein NbS00051072g0006.1 protein NbS00016451g0007.1 protein NbS00020509g0003.1 protein NbS00020509g0004.1 protein NbS00021241g0001.1 protein ; (*GB) gi|255574994|ref|XP_002528403.1| (e_value=1e-36) serine carboxypeptidase, putative [Ricinus communis];; (*SWP) sp|P55748|CBP22_HORVU (e_value=2e-31) Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1;; (*TAIR) AT4G30810.1 (e_value=3e-32) | Symbols: scpl29 | serine carboxypeptidase-like 29 | chr4:15003474-15006017 FORWARD LENGTH=479;; (*ITAG) Solyc07g005960.2.1 (e_value=4e-44) genomic_reference:SL2.40ch07 gene_region:793300-799520 transcript_region:SL2.40ch07:793300..799520- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase K10B2.2 (AHRD V1 **** B6TM29_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00004954g0004.1 protein NbS00004954g0104.1 protein NbS00004954g0107.1 protein NbS00004954g0108.1 protein NbS00017164g0003.1 protein NbS00051848g0002.1 protein NbS00015131g0004.1 protein NbS00015131g0006.1 protein NbS00024690g0006.1 protein NbS00021796g0007.1 protein ; (*GB) gi|218187491|gb|EEC69918.1| (e_value=5e-27) hypothetical protein OsI_00339 [Oryza sativa Indica Group]; NbS00026639g0007.1 protein NbS00021184g0001.1 protein NbS00025944g0006.1 protein NbS00028406g0008.1 protein NbS00000164g0010.1 protein ; (*ITAG) Solyc02g050140.2.1 (e_value=3e-20) genomic_reference:SL2.40ch02 gene_region:24505335-24528424 transcript_region:SL2.40ch02:24505335..24528424+ functional_description:"Os05g0264200 protein (Fragment) (AHRD V1 *-*- Q0DJL6_ORYSJ); contains Interpro domain(s) IPR006927 Protein of unknown function DUF639 "; NbS00006906g0002.1 protein ; (*ITAG) Solyc06g007310.2.1 (e_value=4e-20) genomic_reference:SL2.40ch06 gene_region:1330322-1337690 transcript_region:SL2.40ch06:1330322..1337690- go_terms:GO:0008296 functional_description:"Deoxyribonuclease tatD (AHRD V1 ***- B6TDE6_MAIZE); contains Interpro domain(s) IPR012278 Deoxyribonuclease, TatD Mg-dependent "; GO:0008296 NbS00011298g0001.1 protein NbS00052498g0004.1 protein NbS00060924g0001.1 protein ; (*GB) gi|225435265|ref|XP_002282198.1| (e_value=1e-18) PREDICTED: MLO12 protein [Vitis vinifera];; (*TAIR) AT1G61560.2 (e_value=3e-14) | Symbols: MLO6 | Seven transmembrane MLO family protein | chr1:22708875-22711488 REVERSE LENGTH=521;; (*ITAG) Solyc06g010010.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:4699552-4706571 transcript_region:SL2.40ch06:4699552..4706571+ go_terms:GO:0016021 functional_description:"Mlo like protein (AHRD V1 ***- Q0WWA7_ARATH); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbC23463937g0001.1 protein ; (*GB) gi|359476818|ref|XP_002265487.2| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100243706 [Vitis vinifera];; (*TAIR) AT2G44200.1 (e_value=4e-19) | Symbols: | CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor | chr2:18276302-18278240 FORWARD LENGTH=493;; (*ITAG) Solyc02g084340.1.1 (e_value=6e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:42033504-42034859 transcript_region:SL2.40ch02:42033504..42034859+ functional_description:"Pre-mRNA-splicing factor CWC25-like protein (AHRD V1 *-*- D0MR21_PHYIN); contains Interpro domain(s) IPR019339 CBF1-interacting co-repressor CIR, N-terminal "; NbS00045117g0003.1 protein NbS00006457g0004.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=3e-15) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027045g0006.1 protein NbS00027045g0007.1 protein ; (*GB) gi|224082490|ref|XP_002306713.1| (e_value=5e-43) SET domain protein [Populus trichocarpa];; (*SWP) sp|Q84WW6|ASHH1_ARATH (e_value=2e-40) Histone-lysine N-methyltransferase ASHH1 OS=Arabidopsis thaliana GN=ASHH1 PE=2 SV=1;; (*TAIR) AT1G76710.2 (e_value=2e-41) | Symbols: ASHH1 | SET domain group 26 | chr1:28789887-28792371 REVERSE LENGTH=492;; (*ITAG) Solyc07g008460.2.1 (e_value=1e-80) genomic_reference:SL2.40ch07 gene_region:3363412-3374716 transcript_region:SL2.40ch07:3363412..3374716+ go_terms:GO:0005634 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 *-*- B2W0G7_PYRTR); contains Interpro domain(s) IPR001214 SET "; GO:0005634 NbS00015965g0004.1 protein NbS00037630g0002.1 protein NbS00037630g0003.1 protein ; (*GB) gi|225442975|ref|XP_002267925.1| (e_value=6e-16) PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Vitis vinifera]; NbS00010405g0011.1 protein ; (*GB) gi|255557419|ref|XP_002519740.1| (e_value=7e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G29790.2 (e_value=8e-33) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10430025-10431161 FORWARD LENGTH=378;; (*ITAG) Solyc02g071160.2.1 (e_value=2e-51) genomic_reference:SL2.40ch02 gene_region:35231145-35234551 transcript_region:SL2.40ch02:35231145..35234551+ functional_description:"Os10g0578600 protein (Fragment) (AHRD V1 ***- Q0IVC7_ORYSJ)"; NbS00010405g0013.1 protein NbS00010405g0008.1 protein NbS00018570g0111.1 protein NbS00031376g0104.1 protein NbS00031376g0107.1 protein NbS00014021g0003.1 protein NbS00014021g0005.1 protein NbC24245046g0001.1 protein ; (*GB) gi|255562960|ref|XP_002522485.1| (e_value=3e-35) pattern formation protein, putative [Ricinus communis];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=8e-36) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=6e-37) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc05g013040.2.1 (e_value=6e-41) genomic_reference:SL2.40ch05 gene_region:6150503-6155924 transcript_region:SL2.40ch05:6150503..6155924+ go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00041373g0011.1 protein NbS00041373g0007.1 protein NbS00008736g0004.1 protein NbS00044033g0007.1 protein NbS00028064g0007.1 protein NbS00037736g0108.1 protein NbS00037736g0110.1 protein NbC25691955g0002.1 protein ; (*GB) gi|225463960|ref|XP_002270792.1| (e_value=4e-36) PREDICTED: uncharacterized protein LOC100261576 [Vitis vinifera];; (*TAIR) AT3G04590.2 (e_value=2e-12) | Symbols: | AT hook motif DNA-binding family protein | chr3:1239245-1241603 REVERSE LENGTH=411;; (*ITAG) Solyc11g006190.1.1 (e_value=9e-65) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:934195-941588 transcript_region:SL2.40ch11:934195..941588- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 14 (AHRD V1 ***- Q9SR16_ARATH); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00009512g0003.1 protein NbS00009512g0005.1 protein NbS00009512g0101.1 protein NbS00008991g0002.1 protein NbS00004679g0004.1 protein NbS00001726g0002.1 protein NbS00002006g0005.1 protein NbS00007569g0006.1 protein NbS00012731g0006.1 protein NbS00015265g0005.1 protein NbS00015265g0008.1 protein NbS00029208g0006.1 protein NbS00005193g0003.1 protein ; (*GB) gi|296086739|emb|CBI32374.3| (e_value=4e-47) unnamed protein product [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=4e-41) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=3e-42) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=5e-54) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00016300g0006.1 protein NbS00017016g0003.1 protein NbS00017016g0006.1 protein ; (*GB) gi|147773391|emb|CAN60272.1| (e_value=5e-12) hypothetical protein VITISV_016416 [Vitis vinifera];; (*ITAG) Solyc05g023850.1.1 (e_value=8e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:29603236-29604099 transcript_region:SL2.40ch05:29603236..29604099- functional_description:"Gag-pol polyprotein (AHRD V1 ***- Q710T7_POPDE)"; NbS00029619g0002.1 protein ; (*GB) gi|255565603|ref|XP_002523791.1| (e_value=5e-28) catalytic, putative [Ricinus communis];; (*TAIR) AT3G03240.1 (e_value=9e-29) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:746781-748291 REVERSE LENGTH=333;; (*ITAG) Solyc11g067260.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50079836-50084792 transcript_region:SL2.40ch11:50079836..50084792+ functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7LIQ3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00001859g0004.1 protein NbS00003823g0114.1 protein NbS00003823g0118.1 protein NbS00017366g0011.1 protein ; (*ITAG) Solyc11g044370.1.1 (e_value=1e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:35631238-35632378 transcript_region:SL2.40ch11:35631238..35632378+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM20_MARPO); contains Interpro domain(s) IPR000719 Protein kinase, core "; GO:0006468 NbS00017366g0005.1 protein NbS00017366g0007.1 protein ; (*GB) gi|343172374|gb|AEL98891.1| (e_value=5e-25) integrin-linked protein kinase-like protein, partial [Silene latifolia];; (*TAIR) AT2G31800.1 (e_value=2e-26) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=7e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00017366g0008.1 protein NbS00014392g0016.1 protein NbS00011409g0002.1 protein ; (*ITAG) Solyc05g051020.2.1 (e_value=7e-17) genomic_reference:SL2.40ch05 gene_region:60363991-60364967 transcript_region:SL2.40ch05:60363991..60364967+ go_terms:GO:0008152 functional_description:"Dihydroflavonol 4-reductase family (AHRD V1 ***- D7LCI9_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0008152 NbS00003607g0007.1 protein ; (*GB) gi|297738103|emb|CBI27304.3| (e_value=4e-64) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69210.1 (e_value=6e-65) | Symbols: | Uncharacterised protein family UPF0090 | chr1:26018583-26020058 REVERSE LENGTH=305;; (*ITAG) Solyc05g012120.2.1 (e_value=3e-82) genomic_reference:SL2.40ch05 gene_region:5328775-5332292 transcript_region:SL2.40ch05:5328775..5332292- functional_description:"Ribosome maturation factor rimP (AHRD V1 *-*- RIMP_LEPIN); contains Interpro domain(s) IPR003728 Uncharacterised protein family UPF0090 "; NbS00011191g0008.1 protein ; (*GB) gi|147773857|emb|CAN63015.1| (e_value=3e-16) hypothetical protein VITISV_017408 [Vitis vinifera]; NbS00006716g0004.1 protein NbS00018495g0004.1 protein NbS00018495g0007.1 protein NbS00019042g0002.1 protein NbS00020579g0002.1 protein ; (*ITAG) Solyc00g019980.2.1 (e_value=2e-18) genomic_reference:SL2.40ch00 gene_region:11803308-11804537 transcript_region:SL2.40ch00:11803308..11804537+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012361g0012.1 protein NbS00012361g0015.1 protein ; (*ITAG) Solyc09g015140.2.1 (e_value=1e-13) genomic_reference:SL2.40ch09 gene_region:8058223-8059739 transcript_region:SL2.40ch09:8058223..8059739+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR016027 Nucleic acid-binding, OB-fold-like "; NbS00012361g0022.1 protein NbS00012361g0010.1 protein NbS00002499g0005.1 protein NbS00031489g0003.1 protein NbS00027357g0005.1 protein NbS00005373g0011.1 protein ; (*GB) gi|225427270|ref|XP_002281340.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100245362 [Vitis vinifera];; (*TAIR) AT2G33620.4 (e_value=6e-23) | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351;; (*ITAG) Solyc12g094710.1.1 (e_value=7e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63190934-63194536 transcript_region:SL2.40ch12:63190934..63194536- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 *-*- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00005373g0012.1 protein NbS00005373g0006.1 protein NbS00005373g0009.1 protein NbS00005373g0010.1 protein NbS00039187g0005.1 protein NbS00039187g0007.1 protein NbS00039187g0008.1 protein NbS00005810g0011.1 protein NbS00044832g0004.1 protein NbC26213959g0004.1 protein ; (*GB) gi|147798114|emb|CAN71774.1| (e_value=2e-34) hypothetical protein VITISV_002509 [Vitis vinifera];; (*TAIR) AT5G45330.1 (e_value=4e-24) | Symbols: DCP5-L | decapping 5-like | chr5:18363701-18366544 REVERSE LENGTH=571;; (*ITAG) Solyc08g075300.2.1 (e_value=2e-59) genomic_reference:SL2.40ch08 gene_region:56554330-56563200 transcript_region:SL2.40ch08:56554330..56563200- functional_description:"Protein LSM14 homolog A-B (AHRD V1 *--- L14AB_XENLA); contains Interpro domain(s) IPR019053 FFD and TFG box motifs "; NbS00000185g0003.1 protein NbS00007237g0011.1 protein NbS00007237g0013.1 protein NbS00007237g0015.1 protein ; (*GB) gi|57013967|ref|YP_173439.1| (e_value=2e-23) hypothetical protein NitaMp101 [Nicotiana tabacum]; NbS00007237g0017.1 protein NbS00007237g0018.1 protein NbS00007237g0019.1 protein NbS00007237g0020.1 protein NbS00007237g0021.1 protein NbS00007237g0022.1 protein NbS00015407g0008.1 protein NbS00044623g0003.1 protein NbS00007413g0005.1 protein ; (*GB) gi|297737503|emb|CBI26704.3| (e_value=1e-17) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g014540.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:5523526-5533996 transcript_region:SL2.40ch12:5523526..5533996- go_terms:GO:0003677,GO:0008270 functional_description:"Lysine-specific demethylase 5C (AHRD V1 *--- KDM5C_HUMAN); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0003677,GO:0008270 NbS00000634g0112.1 protein NbS00028569g0008.1 protein NbS00004894g0008.1 protein NbS00004894g0009.1 protein NbS00025970g0008.1 protein NbS00034694g0003.1 protein ; (*ITAG) Solyc02g084560.2.1 (e_value=9e-23) genomic_reference:SL2.40ch02 gene_region:42218984-42222355 transcript_region:SL2.40ch02:42218984..42222355+ go_terms:GO:0046872 functional_description:"Coiled-coil domain-containing protein 90B mitochondrial (AHRD V1 **-- C1C3U9_RANCA); contains Interpro domain(s) IPR012439 Protein of unknown function DUF1640 "; GO:0046872 NbS00047465g0003.1 protein ; (*GB) gi|215490181|dbj|BAG86624.1| (e_value=2e-37) type 2 proly 4-hydroxylase [Nicotiana tabacum];; (*TAIR) AT5G18900.1 (e_value=4e-32) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:6304409-6306166 REVERSE LENGTH=298;; (*ITAG) Solyc01g080530.2.1 (e_value=6e-46) genomic_reference:SL2.40ch01 gene_region:72279435-72287944 transcript_region:SL2.40ch01:72279435..72287944+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha subunit-like protein (AHRD V1 ***- Q8LAN3_ARATH); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00007961g0011.1 protein NbS00025657g0004.1 protein NbS00010349g0001.1 protein NbS00001874g0006.1 protein NbS00011392g0003.1 protein NbS00001920g0014.1 protein NbS00056091g0003.1 protein NbS00001810g0007.1 protein ; (*GB) gi|242032523|ref|XP_002463656.1| (e_value=2e-95) hypothetical protein SORBIDRAFT_01g003700 [Sorghum bicolor];; (*SWP) sp|Q9SE94|MTHR1_MAIZE (e_value=8e-97) Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1;; (*TAIR) AT3G59970.3 (e_value=6e-94) | Symbols: MTHFR1 | methylenetetrahydrofolate reductase 1 | chr3:22151303-22154323 FORWARD LENGTH=592;; (*ITAG) Solyc11g008870.1.1 (e_value=2e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3044787-3049095 transcript_region:SL2.40ch11:3044787..3049095- go_terms:GO:0055114 functional_description:"Methylenetetrahydrofolate reductase (AHRD V1 ***- A5ATB7_VITVI); contains Interpro domain(s) IPR004621 Eukaryotic-type methylenetetrahydrofolate reductase "; GO:0055114 NbS00001745g0004.1 protein NbS00001745g0006.1 protein NbS00001745g0007.1 protein NbS00036068g0007.1 protein NbS00031538g0001.1 protein NbS00046959g0003.1 protein NbS00010354g0007.1 protein ; (*GB) gi|359482496|ref|XP_002274314.2| (e_value=2e-39) PREDICTED: uncharacterized protein LOC100248075 [Vitis vinifera];; (*TAIR) AT3G13990.1 (e_value=2e-25) | Symbols: | Kinase-related protein of unknown function (DUF1296) | chr3:4625708-4630383 REVERSE LENGTH=848;; (*ITAG) Solyc12g049230.1.1 (e_value=1e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46080723-46092167 transcript_region:SL2.40ch12:46080723..46092167+ functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 *--- Q69NN2_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00024860g0013.1 protein NbS00024860g0008.1 protein ; (*ITAG) Solyc04g014850.2.1 (e_value=8e-16) genomic_reference:SL2.40ch04 gene_region:5078602-5082852 transcript_region:SL2.40ch04:5078602..5082852- functional_description:"Unknown Protein (AHRD V1)"; NbS00061828g0002.1 protein ; (*GB) gi|224134150|ref|XP_002327768.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SD33|U183_ARATH (e_value=5e-18) UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2;; (*TAIR) AT3G51130.1 (e_value=4e-19) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0183 (InterPro:IPR005373); Has 269 Blast hits to 265 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr3:18994219-18997180 FORWARD LENGTH=410;; (*ITAG) Solyc02g075630.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:36358255-36360101 transcript_region:SL2.40ch02:36358255..36360101- functional_description:"UPF0183 protein C16orf70 homolog (AHRD V1 **-- CP070_RAT); contains Interpro domain(s) IPR005373 Uncharacterised protein family UPF0183 "; NbS00009975g0002.1 protein NbS00009975g0003.1 protein NbS00031973g0006.1 protein ; (*GB) gi|388521575|gb|AFK48849.1| (e_value=1e-19) unknown [Lotus japonicus]; NbS00032493g0002.1 protein NbS00004618g0003.1 protein ; (*TAIR) AT1G79190.1 (e_value=3e-14) | Symbols: | ARM repeat superfamily protein | chr1:29788639-29794116 FORWARD LENGTH=1335;; (*ITAG) Solyc12g017280.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:6478972-6496635 transcript_region:SL2.40ch12:6478972..6496635+ go_terms:GO:0005488 functional_description:"Os10g0575800 protein (Fragment) (AHRD V1 ***- Q0IVE5_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00016681g0006.1 protein NbS00026134g0007.1 protein NbS00042661g0007.1 protein NbS00042661g0010.1 protein NbS00004296g0007.1 protein NbS00002011g0106.1 protein NbS00058319g0001.1 protein NbS00041766g0005.1 protein NbS00046567g0003.1 protein NbS00043942g0003.1 protein ; (*GB) gi|297734412|emb|CBI15659.3| (e_value=8e-16) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8LBB2|KING1_ARATH (e_value=4e-14) SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2;; (*TAIR) AT3G48530.1 (e_value=3e-15) | Symbols: KING1 | SNF1-related protein kinase regulatory subunit gamma 1 | chr3:17987559-17989592 FORWARD LENGTH=424;; (*ITAG) Solyc03g111310.2.1 (e_value=4e-23) genomic_reference:SL2.40ch03 gene_region:55978825-55983439 transcript_region:SL2.40ch03:55978825..55983439+ functional_description:"AKIN gamma (AHRD V1 **-- Q7XYY0_MEDTR); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00043942g0004.1 protein NbS00014651g0012.1 protein NbS00014651g0006.1 protein NbS00014651g0009.1 protein ; (*GB) gi|225427155|ref|XP_002277531.1| (e_value=5e-13) PREDICTED: (R)-mandelonitrile lyase-like [Vitis vinifera];; (*ITAG) Solyc03g123820.1.1 (e_value=2e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00022414g0004.1 protein NbS00014990g0002.1 protein NbS00014990g0005.1 protein NbS00003420g0005.1 protein NbS00003420g0007.1 protein NbS00003420g0010.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=6e-21) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc06g073050.2.1 (e_value=8e-35) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00030264g0001.1 protein NbS00030264g0002.1 protein ; (*ITAG) Solyc05g006550.2.1 (e_value=9e-27) genomic_reference:SL2.40ch05 gene_region:1184571-1188615 transcript_region:SL2.40ch05:1184571..1188615+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00031995g0004.1 protein NbS00007629g0006.1 protein NbS00007629g0109.1 protein NbS00007629g0218.1 protein NbS00009377g0005.1 protein NbS00019981g0011.1 protein NbS00019981g0005.1 protein NbC26055767g0002.1 protein ; (*GB) gi|359477095|ref|XP_003631937.1| (e_value=6e-29) PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=7e-28) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.3 (e_value=6e-29) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029;; (*ITAG) Solyc01g057900.2.1 (e_value=8e-32) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00061808g0001.1 protein NbS00024852g0004.1 protein NbS00002046g0103.1 protein NbS00002652g0002.1 protein NbS00048493g0002.1 protein NbS00028568g0002.1 protein NbS00033589g0002.1 protein NbS00005382g0002.1 protein NbS00019793g0002.1 protein NbS00002621g0104.1 protein NbS00002621g0210.1 protein NbS00003648g0001.1 protein NbS00018093g0002.1 protein NbS00050790g0002.1 protein NbS00054717g0002.1 protein NbS00011780g0005.1 protein ; (*GB) gi|225428201|ref|XP_002278951.1| (e_value=4e-45) PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera];; (*SWP) sp|B9HQZ6|SYAP_POPTR (e_value=1e-46) Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1;; (*TAIR) AT5G22800.1 (e_value=3e-44) | Symbols: EMB86, EMB1030, EMB263 | Alanyl-tRNA synthetase, class IIc | chr5:7616221-7619961 REVERSE LENGTH=978;; (*ITAG) Solyc01g111990.2.1 (e_value=2e-50) genomic_reference:SL2.40ch01 gene_region:89884444-89893360 transcript_region:SL2.40ch01:89884444..89893360+ go_terms:GO:0000049 functional_description:"Alanyl-tRNA synthetase (AHRD V1 **** Q9FFC7_ARATH); contains Interpro domain(s) IPR002318 Alanyl-tRNA synthetase, class IIc "; GO:0000049 NbS00011780g0006.1 protein NbS00060427g0001.1 protein NbS00001384g0009.1 protein NbS00015236g0005.1 protein NbS00015236g0008.1 protein NbS00014931g0006.1 protein NbS00014931g0009.1 protein NbS00014931g0010.1 protein NbS00029648g0001.1 protein NbS00027951g0001.1 protein ; (*GB) gi|32470656|gb|AAP45182.1| (e_value=1e-17) Putative kinesin-like protein, identical [Solanum bulbocastanum];; (*ITAG) Solyc08g075930.2.1 (e_value=1e-19) genomic_reference:SL2.40ch08 gene_region:57173960-57176619 transcript_region:SL2.40ch08:57173960..57176619- functional_description:"Kinesin-like (AHRD V1 *-*- Q6Z9U4_ORYSJ)"; NbS00002927g0106.1 protein NbS00007069g0001.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=6e-23) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=3e-21) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=9e-32) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00018900g0003.1 protein NbS00018900g0004.1 protein NbS00024371g0003.1 protein NbS00001206g0007.1 protein NbS00001206g0008.1 protein NbS00045696g0001.1 protein NbS00030267g0001.1 protein NbS00010513g0008.1 protein ; (*ITAG) Solyc06g073050.2.1 (e_value=3e-22) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00006913g0005.1 protein ; (*GB) gi|133711801|gb|ABO36619.1| (e_value=1e-21) hypothetical protein LYC_68t000001 [Solanum lycopersicum];; (*ITAG) Solyc10g079230.1.1 (e_value=2e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:60129705-60131165 transcript_region:SL2.40ch10:60129705..60131165+ functional_description:"CM0545.450.nc protein (AHRD V1 ***- B0BLB7_LOTJA); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00006913g0006.1 protein NbS00013814g0003.1 protein NbS00023982g0004.1 protein NbS00028872g0001.1 protein ; (*ITAG) Solyc02g081640.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:40091504-40097423 transcript_region:SL2.40ch02:40091504..40097423+ go_terms:GO:0003677 functional_description:"Transcription factor tfiiib component (AHRD V1 *--- B6K325_SCHJY); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; GO:0003677 NbS00032031g0010.1 protein NbS00031434g0003.1 protein NbS00028988g0005.1 protein NbS00018736g0005.1 protein ; (*TAIR) AT2G33820.1 (e_value=6e-14) | Symbols: ATMBAC1, MBAC1 | Mitochondrial substrate carrier family protein | chr2:14306293-14308293 REVERSE LENGTH=311;; (*ITAG) Solyc02g077910.2.1 (e_value=3e-14) genomic_reference:SL2.40ch02 gene_region:37316259-37319906 transcript_region:SL2.40ch02:37316259..37319906+ go_terms:GO:0000064 functional_description:"Mitochondrial ornithine carrier protein (AHRD V1 **** B6K278_SCHJY); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier "; GO:0000064 NbS00018736g0008.1 protein ; (*GB) gi|111183166|gb|ABH07903.1| (e_value=1e-25) mitochondrial amino acid carrier [Solanum lycopersicum];; (*TAIR) AT2G33820.1 (e_value=2e-17) | Symbols: ATMBAC1, MBAC1 | Mitochondrial substrate carrier family protein | chr2:14306293-14308293 REVERSE LENGTH=311;; (*ITAG) Solyc02g077910.2.1 (e_value=2e-28) genomic_reference:SL2.40ch02 gene_region:37316259-37319906 transcript_region:SL2.40ch02:37316259..37319906+ go_terms:GO:0000064 functional_description:"Mitochondrial ornithine carrier protein (AHRD V1 **** B6K278_SCHJY); contains Interpro domain(s) IPR018108 Mitochondrial substrate/solute carrier "; GO:0000064 NbS00018736g0102.1 protein NbS00052098g0004.1 protein NbS00052098g0007.1 protein NbC23679731g0001.1 protein ; (*GB) gi|255566289|ref|XP_002524131.1| (e_value=1e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G45030.2 (e_value=4e-22) | Symbols: | Trypsin family protein | chr5:18172981-18175238 FORWARD LENGTH=607;; (*ITAG) Solyc02g068910.2.1 (e_value=2e-27) genomic_reference:SL2.40ch02 gene_region:33372930-33380165 transcript_region:SL2.40ch02:33372930..33380165+ go_terms:GO:0003824 functional_description:"Peptidase trypsin-like serine and cysteine proteases (Fragment) (AHRD V1 ***- A2Q138_MEDTR); contains Interpro domain(s) IPR009003 Peptidase, trypsin-like serine and cysteine "; GO:0003824 NbC24888753g0001.1 protein ; (*ITAG) Solyc11g005340.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:269717-272662 transcript_region:SL2.40ch11:269717..272662- go_terms:GO:0009507 functional_description:"PAP fibrillin family protein (AHRD V1 **-- B5W0K3_SPIMA); contains Interpro domain(s) IPR006843 PAP fibrillin "; GO:0009507 NbS00031998g0005.1 protein NbS00033331g0003.1 protein ; (*GB) gi|147862555|emb|CAN81495.1| (e_value=2e-21) hypothetical protein VITISV_031969 [Vitis vinifera]; NbS00058854g0001.1 protein NbS00058854g0002.1 protein NbS00002163g0004.1 protein NbS00002163g0007.1 protein NbS00013080g0104.1 protein NbS00013080g0105.1 protein NbS00045008g0002.1 protein NbS00031804g0004.1 protein NbS00033361g0004.1 protein NbS00020440g0002.1 protein NbS00037514g0003.1 protein NbS00023694g0014.1 protein NbS00025595g0007.1 protein NbS00010724g0015.1 protein NbS00031331g0003.1 protein NbS00049232g0004.1 protein NbS00020987g0002.1 protein NbS00017011g0008.1 protein ; (*GB) gi|147865453|emb|CAN79406.1| (e_value=5e-20) hypothetical protein VITISV_000710 [Vitis vinifera];; (*TAIR) AT2G30720.1 (e_value=1e-15) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr2:13089604-13091538 REVERSE LENGTH=455;; (*ITAG) Solyc12g019490.1.1 (e_value=4e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10584321-10593011 transcript_region:SL2.40ch12:10584321..10593011- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00007232g0005.1 protein ; (*GB) gi|225458601|ref|XP_002282762.1| (e_value=3e-23) PREDICTED: uncharacterized protein LOC100266116 [Vitis vinifera];; (*SWP) sp|Q8GWW4|GUX2_ARATH (e_value=2e-13) UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1;; (*TAIR) AT4G33330.1 (e_value=2e-14) | Symbols: PGSIP3, GUX2 | plant glycogenin-like starch initiation protein 3 | chr4:16060142-16063061 REVERSE LENGTH=596;; (*ITAG) Solyc04g078980.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:61195605-61198619 transcript_region:SL2.40ch04:61195605..61198619- go_terms:GO:0016757 functional_description:"Glycogenin-like protein (AHRD V1 ***- Q5NA53_ORYSJ); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016757 NbS00007232g0007.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT4G04650.1 (e_value=1e-11) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr4:2353989-2355213 REVERSE LENGTH=332;; (*ITAG) Solyc00g304030.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00003504g0011.1 protein ; (*ITAG) Solyc00g006090.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00017690g0007.1 protein NbS00018447g0006.1 protein NbS00037312g0005.1 protein NbS00037312g0009.1 protein NbS00009415g0005.1 protein NbS00045296g0005.1 protein ; (*ITAG) Solyc07g009220.1.1 (e_value=5e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:4253377-4256772 transcript_region:SL2.40ch07:4253377..4256772- go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LH03_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00005377g0014.1 protein NbS00005377g0009.1 protein NbS00025044g0003.1 protein NbS00025044g0104.1 protein NbS00025044g0108.1 protein NbS00019593g0008.1 protein NbS00019593g0009.1 protein NbS00018799g0008.1 protein NbS00054762g0004.1 protein NbS00014783g0005.1 protein NbS00041256g0003.1 protein NbS00014736g0002.1 protein NbS00031974g0013.1 protein NbS00031974g0020.1 protein NbS00031974g0022.1 protein ; (*ITAG) Solyc04g081420.2.1 (e_value=9e-21) genomic_reference:SL2.40ch04 gene_region:62997146-63001994 transcript_region:SL2.40ch04:62997146..63001994- functional_description:"Unknown Protein (AHRD V1)"; NbS00021832g0011.1 protein NbS00021832g0016.1 protein NbS00021832g0103.1 protein NbS00021832g0104.1 protein NbS00006004g0005.1 protein ; (*GB) gi|169264928|dbj|BAG12304.1| (e_value=1e-26) 6b-interacting protein 2 [Nicotiana tabacum]; NbS00006004g0102.1 protein NbS00009103g0001.1 protein NbS00013146g0004.1 protein NbS00061247g0003.1 protein NbS00031508g0003.1 protein NbS00002311g0007.1 protein ; (*GB) gi|350285879|gb|AEQ28191.1| (e_value=7e-19) yellow stripe-like protein 6 [Malus xiaojinensis];; (*SWP) sp|Q6R3K8|YSL4_ARATH (e_value=7e-19) Probable metal-nicotianamine transporter YSL4 OS=Arabidopsis thaliana GN=YSL4 PE=2 SV=1;; (*TAIR) AT5G41000.1 (e_value=5e-20) | Symbols: YSL4 | YELLOW STRIPE like 4 | chr5:16420910-16423697 FORWARD LENGTH=670;; (*ITAG) Solyc02g094280.2.1 (e_value=1e-23) genomic_reference:SL2.40ch02 gene_region:49437687-49445952 transcript_region:SL2.40ch02:49437687..49445952+ go_terms:GO:0015198 functional_description:"Oligopeptide transporter (Fragment) (AHRD V1 **** B0DAK3_LACBS); contains Interpro domain(s) IPR004813 Oligopeptide transporter OPT superfamily "; GO:0015198 NbS00035470g0001.1 protein ; (*ITAG) Solyc02g086300.2.1 (e_value=6e-17) genomic_reference:SL2.40ch02 gene_region:43573059-43575024 transcript_region:SL2.40ch02:43573059..43575024- go_terms:GO:0006541 functional_description:"Glutamine amidotransferase (AHRD V1 *-*- C6YZA6_9BACE); contains Interpro domain(s) IPR011697 Peptidase C26 "; GO:0006541 NbS00029379g0001.1 protein NbS00014266g0003.1 protein NbS00029851g0004.1 protein NbS00000426g0003.1 protein ; (*ITAG) Solyc04g025430.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:20486364-20488334 transcript_region:SL2.40ch04:20486364..20488334+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7Q9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00015255g0005.1 protein NbS00047073g0007.1 protein NbS00010045g0011.1 protein NbS00009422g0002.1 protein NbS00009422g0003.1 protein NbC23557926g0001.1 protein ; (*ITAG) Solyc06g073160.2.1 (e_value=3e-28) genomic_reference:SL2.40ch06 gene_region:41461216-41466739 transcript_region:SL2.40ch06:41461216..41466739- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 *-*- Q9FM45_ARATH)"; NbS00035967g0005.1 protein NbS00038096g0007.1 protein NbS00038096g0010.1 protein NbS00014754g0011.1 protein NbS00014754g0013.1 protein NbS00014754g0010.1 protein ; (*ITAG) Solyc04g081480.1.1 (e_value=1e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch04 gene_region:63032063-63035236 transcript_region:SL2.40ch04:63032063..63035236+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034161g0005.1 protein NbS00050944g0003.1 protein ; (*GB) gi|297828980|ref|XP_002882372.1| (e_value=3e-19) hypothetical protein ARALYDRAFT_477743 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G04740.1 (e_value=2e-20) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=3e-27) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbS00050944g0005.1 protein NbC25233718g0001.1 protein ; (*ITAG) Solyc11g012770.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5526597-5549066 transcript_region:SL2.40ch11:5526597..5549066+ go_terms:GO:0005488 functional_description:"Sister chromatid cohesion protein PDS5 homolog B (AHRD V1 **-- PDS5B_HUMAN); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00020919g0003.1 protein ; (*GB) gi|82623399|gb|ABB87114.1| (e_value=3e-18) cytochrome c oxidase family protein-like [Solanum tuberosum];; (*SWP) sp|Q9SSB8|CX5B2_ARATH (e_value=1e-18) Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1;; (*TAIR) AT1G80230.1 (e_value=8e-20) | Symbols: | Rubredoxin-like superfamily protein | chr1:30169784-30170999 REVERSE LENGTH=171;; (*ITAG) Solyc12g042900.1.1 (e_value=6e-23) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:43796989-43804922 transcript_region:SL2.40ch12:43796989..43804922- go_terms:GO:0005740 functional_description:"Cytochrome c oxidase subunit Vb (AHRD V1 ***- Q0KKQ8_PEA); contains Interpro domain(s) IPR002124 Cytochrome c oxidase, subunit Vb "; GO:0005740 NbS00020919g0004.1 protein ; (*GB) gi|388512435|gb|AFK44279.1| (e_value=4e-26) unknown [Lotus japonicus];; (*SWP) sp|Q9LW15|CX5B1_ARATH (e_value=1e-26) Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana GN=COX5B-1 PE=2 SV=1;; (*TAIR) AT3G15640.2 (e_value=9e-28) | Symbols: | Rubredoxin-like superfamily protein | chr3:5299273-5301371 FORWARD LENGTH=175;; (*ITAG) Solyc12g042900.1.1 (e_value=3e-30) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:43796989-43804922 transcript_region:SL2.40ch12:43796989..43804922- go_terms:GO:0005740 functional_description:"Cytochrome c oxidase subunit Vb (AHRD V1 ***- Q0KKQ8_PEA); contains Interpro domain(s) IPR002124 Cytochrome c oxidase, subunit Vb "; GO:0005740 NbS00020919g0005.1 protein NbS00054564g0003.1 protein NbS00016883g0003.1 protein NbS00034147g0008.1 protein NbS00021472g0005.1 protein NbC23756437g0001.1 protein ; (*TAIR) AT3G26560.1 (e_value=6e-14) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc07g039550.2.1 (e_value=3e-16) genomic_reference:SL2.40ch07 gene_region:45039463-45043515 transcript_region:SL2.40ch07:45039463..45043515- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00003448g0013.1 protein NbS00003448g0016.1 protein NbS00048088g0004.1 protein NbS00007517g0006.1 protein NbS00007517g0009.1 protein NbS00026810g0005.1 protein ; (*ITAG) Solyc02g071090.2.1 (e_value=1e-13) genomic_reference:SL2.40ch02 gene_region:35154902-35157324 transcript_region:SL2.40ch02:35154902..35157324- go_terms:GO:0005345 functional_description:"Purine permease family protein (AHRD V1 **-* D7MCV2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005345 NbS00026810g0006.1 protein NbS00052309g0001.1 protein NbS00058444g0006.1 protein NbS00027025g0002.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=2e-20) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*TAIR) AT1G34430.1 (e_value=1e-17) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=3e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00058164g0004.1 protein ; (*ITAG) Solyc03g117270.1.1 (e_value=5e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:60500607-60501878 transcript_region:SL2.40ch03:60500607..60501878+ functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00039689g0002.1 protein NbS00002849g0005.1 protein NbS00002849g0010.1 protein NbS00003320g0012.1 protein NbS00003320g0015.1 protein NbS00003320g0007.1 protein NbS00003320g0008.1 protein NbS00003320g0009.1 protein ; (*ITAG) Solyc11g011540.1.1 (e_value=8e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00011173g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015473g0002.1 protein NbS00015473g0004.1 protein NbS00026839g0002.1 protein NbS00006218g0006.1 protein NbS00037267g0003.1 protein NbS00010526g0006.1 protein NbS00010526g0009.1 protein NbS00048952g0003.1 protein NbS00014308g0002.1 protein NbS00025146g0002.1 protein NbS00007660g0005.1 protein NbS00053813g0001.1 protein NbS00006693g0001.1 protein NbS00022924g0005.1 protein NbS00031897g0004.1 protein ; (*GB) gi|356568232|ref|XP_003552317.1| (e_value=6e-20) PREDICTED: uncharacterized protein LOC100809661 [Glycine max]; NbS00031897g0006.1 protein NbS00006165g0007.1 protein ; (*GB) gi|356509688|ref|XP_003523578.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100799039 [Glycine max];; (*ITAG) Solyc07g025380.2.1 (e_value=6e-31) genomic_reference:SL2.40ch07 gene_region:27596841-27602681 transcript_region:SL2.40ch07:27596841..27602681- functional_description:"Unknown Protein (AHRD V1)"; NbS00015388g0004.1 protein ; (*GB) gi|297812979|ref|XP_002874373.1| (e_value=3e-23) zinc finger family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8LGA5|ATL31_ARATH (e_value=1e-24) E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31 PE=1 SV=2;; (*TAIR) AT5G27420.1 (e_value=9e-26) | Symbols: CNI1, ATL31 | carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368;; (*ITAG) Solyc03g112340.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00060666g0001.1 protein NbS00011000g0002.1 protein NbS00002284g0005.1 protein NbS00002284g0007.1 protein NbS00002284g0106.1 protein NbS00003095g0002.1 protein NbS00028296g0001.1 protein ; (*GB) gi|238005772|gb|ACR33921.1| (e_value=7e-16) unknown [Zea mays]; NbS00014128g0009.1 protein NbS00010052g0002.1 protein NbS00010052g0004.1 protein NbS00013149g0004.1 protein NbS00017822g0001.1 protein ; (*GB) gi|154269260|gb|ABS72190.1| (e_value=1e-15) chaperonin [Corchorus olitorius];; (*TAIR) AT5G20890.1 (e_value=8e-16) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:7087020-7089906 REVERSE LENGTH=527;; (*ITAG) Solyc11g069000.1.1 (e_value=1e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50652125-50657452 transcript_region:SL2.40ch11:50652125..50657452- go_terms:GO:0044267,GO:0006457 functional_description:"T-complex protein 1 subunit beta (AHRD V1 ***- B6T8X5_MAIZE); contains Interpro domain(s) IPR012716 T-complex protein 1, beta subunit "; GO:0044267,GO:0006457 NbS00016757g0005.1 protein NbS00016757g0007.1 protein NbS00018018g0006.1 protein ; (*GB) gi|359496979|ref|XP_002264497.2| (e_value=1e-40) PREDICTED: dehydrogenase/reductase SDR family member 4 [Vitis vinifera];; (*SWP) sp|Q13268|DHRS2_HUMAN (e_value=1e-19) Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3;; (*TAIR) AT4G05530.1 (e_value=9e-36) | Symbols: IBR1, SDRA | indole-3-butyric acid response 1 | chr4:2816462-2818074 FORWARD LENGTH=254;; (*ITAG) Solyc04g014670.2.1 (e_value=4e-43) genomic_reference:SL2.40ch04 gene_region:4934139-4937078 transcript_region:SL2.40ch04:4934139..4937078+ go_terms:GO:0001758 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 **** C0BIG4_9BACT); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0001758 NbS00023227g0007.1 protein NbS00025205g0008.1 protein NbS00014124g0005.1 protein NbS00057840g0002.1 protein NbS00017657g0003.1 protein NbS00017657g0005.1 protein NbS00013556g0011.1 protein NbS00013556g0006.1 protein NbS00019017g0002.1 protein NbS00025413g0002.1 protein NbS00036926g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-38) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015577g0001.1 protein NbS00015577g0003.1 protein NbS00033611g0005.1 protein ; (*GB) gi|224831509|gb|ACN66754.1| (e_value=3e-39) GMP [Carica papaya];; (*SWP) sp|Q6Z9A3|GMPP3_ORYSJ (e_value=1e-39) Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1;; (*TAIR) AT2G39770.2 (e_value=4e-40) | Symbols: CYT1 | Glucose-1-phosphate adenylyltransferase family protein | chr2:16589401-16590741 FORWARD LENGTH=361;; (*ITAG) Solyc09g011220.2.1 (e_value=1e-39) genomic_reference:SL2.40ch09 gene_region:4560214-4562162 transcript_region:SL2.40ch09:4560214..4562162+ go_terms:GO:0004475,GO:0051015 functional_description:"GDP-D-mannose pyrophosphorylase 3"; GO:0004475,GO:0051015 NbS00032671g0005.1 protein NbS00047957g0007.1 protein NbC23876461g0001.1 protein ; (*GB) gi|297740427|emb|CBI30609.3| (e_value=5e-21) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9XTL9|PYG_DROME (e_value=6e-16) Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2;; (*ITAG) Solyc02g077680.2.1 (e_value=7e-30) genomic_reference:SL2.40ch02 gene_region:37144954-37157686 transcript_region:SL2.40ch02:37144954..37157686+ go_terms:GO:0008184 functional_description:"Phosphorylase (AHRD V1 **** B9H2Q8_POPTR); contains Interpro domain(s) IPR011833 Glycogen/starch/alpha-glucan phosphorylase "; GO:0008184 NbS00050600g0003.1 protein ; (*GB) gi|297801630|ref|XP_002868699.1| (e_value=3e-28) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G39790.1 (e_value=1e-29) | Symbols: | 5'-AMP-activated protein kinase-related | chr5:15932884-15935121 REVERSE LENGTH=273;; (*ITAG) Solyc02g091530.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:47375352-47380189 transcript_region:SL2.40ch02:47375352..47380189+ go_terms:GO:0030247 functional_description:"5'-AMP-activated protein kinase subunit beta-1 (Fragment) (AHRD V1 *-*- AAKB1_PIG)"; GO:0030247 NbS00004422g0012.1 protein NbS00004422g0013.1 protein NbS00004422g0008.1 protein NbS00011358g0005.1 protein NbS00040545g0004.1 protein NbS00020769g0105.1 protein NbS00020769g0106.1 protein NbS00007437g0012.1 protein ; (*ITAG) Solyc09g056490.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:44960018-44962489 transcript_region:SL2.40ch09:44960018..44962489+ go_terms:GO:0008270 functional_description:"MuDRA transposase-like (AHRD V1 *-*- Q5GIT1_CUCME); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00023449g0002.1 protein NbS00024560g0017.1 protein NbS00024560g0019.1 protein NbS00024560g0023.1 protein NbS00053832g0001.1 protein NbS00007932g0005.1 protein ; (*GB) gi|147835239|emb|CAN67792.1| (e_value=1e-21) hypothetical protein VITISV_001313 [Vitis vinifera]; NbS00007932g0008.1 protein NbS00014515g0002.1 protein NbS00000028g0002.1 protein NbS00000028g0003.1 protein NbS00021666g0004.1 protein ; (*TAIR) AT2G19600.1 (e_value=8e-13) | Symbols: ATKEA4, KEA4 | K+ efflux antiporter 4 | chr2:8479275-8483482 FORWARD LENGTH=592;; (*ITAG) Solyc05g026380.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:41061587-41092289 transcript_region:SL2.40ch05:41061587..41092289- go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-** Q46BZ7_METBF); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00021666g0005.1 protein NbS00021666g0007.1 protein NbS00056818g0003.1 protein NbC26062811g0002.1 protein ; (*GB) gi|255560886|ref|XP_002521456.1| (e_value=1e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G27670.1 (e_value=5e-27) | Symbols: RST1 | ARM repeat superfamily protein | chr3:10245338-10253158 FORWARD LENGTH=1841;; (*ITAG) Solyc02g086500.2.1 (e_value=8e-43) genomic_reference:SL2.40ch02 gene_region:43746420-43759951 transcript_region:SL2.40ch02:43746420..43759951+ go_terms:GO:0005488 functional_description:"Genomic DNA chromosome 3 P1 clone MGF10 (AHRD V1 **-- Q9LVX3_ARATH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00008394g0003.1 protein NbS00008394g0004.1 protein NbS00021092g0001.1 protein NbS00023647g0112.1 protein NbS00004149g0002.1 protein NbS00004149g0107.1 protein NbS00020519g0006.1 protein NbS00020519g0009.1 protein ; (*ITAG) Solyc01g014060.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:11139275-11140208 transcript_region:SL2.40ch01:11139275..11140208- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 **-- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00007097g0104.1 protein NbS00007097g0105.1 protein NbS00033720g0002.1 protein NbS00014026g0001.1 protein NbS00023976g0006.1 protein NbS00013363g0003.1 protein NbS00042194g0001.1 protein ; (*GB) gi|147817651|emb|CAN62395.1| (e_value=4e-16) hypothetical protein VITISV_021306 [Vitis vinifera]; NbS00017799g0004.1 protein NbS00017799g0005.1 protein NbS00001897g0003.1 protein NbS00012270g0003.1 protein NbS00008049g0012.1 protein NbS00015956g0003.1 protein ; (*GB) gi|302142350|emb|CBI19553.3| (e_value=5e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g079240.2.1 (e_value=1e-17) genomic_reference:SL2.40ch04 gene_region:61350800-61354292 transcript_region:SL2.40ch04:61350800..61354292- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00033510g0002.1 protein NbS00011668g0003.1 protein NbS00001991g0004.1 protein NbS00008266g0002.1 protein NbS00050068g0002.1 protein NbC25670860g0002.1 protein ; (*GB) gi|298204751|emb|CBI25249.3| (e_value=7e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g072400.1.1 (e_value=2e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36193512-36197370 transcript_region:SL2.40ch02:36193512..36197370- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00001483g0207.1 protein NbS00005055g0003.1 protein NbS00010423g0003.1 protein NbS00037889g0001.1 protein ; (*GB) gi|225449050|ref|XP_002274358.1| (e_value=9e-20) PREDICTED: mRNA decapping complex subunit 2 [Vitis vinifera];; (*TAIR) AT5G13570.1 (e_value=4e-15) | Symbols: DCP2, TDT, ATDCP2 | decapping 2 | chr5:4367532-4369992 FORWARD LENGTH=373;; (*ITAG) Solyc05g056110.2.1 (e_value=4e-26) genomic_reference:SL2.40ch05 gene_region:64647274-64657456 transcript_region:SL2.40ch05:64647274..64657456- go_terms:GO:0042803 functional_description:"mRNA-decapping enzyme 2 (AHRD V1 ***- D3BA13_POLPA); contains Interpro domain(s) IPR007722 Dcp2, box A "; GO:0042803 NbS00033412g0001.1 protein ; (*ITAG) Solyc03g033640.2.1 (e_value=3e-16) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00016823g0005.1 protein NbS00016823g0006.1 protein NbS00023655g0005.1 protein NbS00039754g0002.1 protein NbS00006953g0011.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006953g0006.1 protein NbS00006953g0008.1 protein NbS00025688g0007.1 protein NbS00017244g0001.1 protein NbS00032586g0009.1 protein NbS00000387g0004.1 protein NbS00000387g0005.1 protein NbS00000387g0007.1 protein NbS00000387g0009.1 protein NbS00030509g0002.1 protein ; (*ITAG) Solyc10g084830.1.1 (e_value=4e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63549984-63554014 transcript_region:SL2.40ch10:63549984..63554014- functional_description:"Amino acid transporter (AHRD V1 ***- B9IFW4_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00044592g0011.1 protein NbS00044534g0001.1 protein NbS00060376g0004.1 protein ; (*GB) gi|81238594|gb|ABB60055.1| (e_value=2e-17) 11S globulin precursor isoform 4 [Sesamum indicum];; (*ITAG) Solyc09g025210.2.1 (e_value=5e-29) genomic_reference:SL2.40ch09 gene_region:19251698-19253627 transcript_region:SL2.40ch09:19251698..19253627+ go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00029007g0002.1 protein NbS00023021g0007.1 protein NbS00018069g0003.1 protein NbS00001956g0004.1 protein ; (*GB) gi|147769855|emb|CAN61272.1| (e_value=4e-19) hypothetical protein VITISV_039063 [Vitis vinifera]; NbS00001956g0110.1 protein NbS00037812g0004.1 protein NbS00004628g0005.1 protein NbS00005443g0009.1 protein NbS00005443g0010.1 protein ; (*GB) gi|15232018|ref|NP_187525.1| (e_value=3e-12) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT3G09130.1 (e_value=6e-15) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42786.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2799312-2800505 FORWARD LENGTH=397; NbS00016212g0003.1 protein NbS00016212g0004.1 protein NbS00016212g0005.1 protein NbS00016212g0105.1 protein NbS00016212g0109.1 protein NbS00016212g0110.1 protein NbS00002190g0103.1 protein NbS00002190g0209.1 protein NbS00004656g0001.1 protein NbS00011442g0004.1 protein ; (*ITAG) Solyc05g008470.1.1 (e_value=8e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00011442g0005.1 protein NbS00009191g0005.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=7e-12) hypothetical protein [Cucumis melo subsp. melo]; NbS00011626g0001.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=3e-21) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc00g006170.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4101282-4101893 transcript_region:SL2.40ch00:4101282..4101893+ functional_description:"Zinc finger CCHC-type (AHRD V1 **-- Q1SKZ9_MEDTR)"; NbS00010494g0006.1 protein NbS00010494g0103.1 protein NbS00001612g0005.1 protein NbS00031967g0012.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00025922g0002.1 protein NbS00024075g0005.1 protein ; (*ITAG) Solyc12g044700.1.1 (e_value=5e-16) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:45400172-45401544 transcript_region:SL2.40ch12:45400172..45401544+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR)"; NbS00038702g0004.1 protein NbS00006815g0005.1 protein NbS00042107g0002.1 protein NbS00041770g0007.1 protein ; (*GB) gi|255605097|ref|XP_002538338.1| (e_value=5e-27) conserved hypothetical protein [Ricinus communis]; NbS00044424g0001.1 protein NbS00058853g0004.1 protein NbS00001899g0003.1 protein NbS00054926g0006.1 protein NbS00055206g0002.1 protein NbS00009724g0005.1 protein ; (*ITAG) Solyc02g082290.2.1 (e_value=8e-14) genomic_reference:SL2.40ch02 gene_region:40576895-40587329 transcript_region:SL2.40ch02:40576895..40587329+ go_terms:GO:0005524,GO:0008270 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 **-- Q4VBZ9_HUMAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524,GO:0008270 NbS00002561g0003.1 protein NbS00014845g0005.1 protein NbS00009921g0105.1 protein NbS00009921g0108.1 protein NbS00023573g0005.1 protein ; (*GB) gi|115453981|ref|NP_001050591.1| (e_value=4e-16) Os03g0594100 [Oryza sativa Japonica Group];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-17) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*ITAG) Solyc06g060190.2.1 (e_value=5e-27) genomic_reference:SL2.40ch06 gene_region:34539342-34541210 transcript_region:SL2.40ch06:34539342..34541210- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00023927g0014.1 protein NbS00033770g0003.1 protein NbS00033770g0004.1 protein NbS00011380g0004.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=2e-28) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=6e-23) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=5e-24) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00011380g0005.1 protein NbS00004813g0002.1 protein NbS00004813g0003.1 protein NbS00004813g0103.1 protein NbS00004813g0202.1 protein NbS00004813g0309.1 protein NbS00001467g0003.1 protein NbS00001467g0004.1 protein NbS00003114g0003.1 protein NbS00001712g0006.1 protein NbS00019904g0004.1 protein NbS00019904g0006.1 protein NbS00015073g0002.1 protein NbS00013216g0102.1 protein NbS00024525g0003.1 protein NbS00008053g0005.1 protein NbS00030453g0007.1 protein ; (*GB) gi|225456794|ref|XP_002277650.1| (e_value=3e-21) PREDICTED: protein CbbY [Vitis vinifera];; (*TAIR) AT3G48420.1 (e_value=4e-23) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr3:17929743-17931551 FORWARD LENGTH=319;; (*ITAG) Solyc03g111610.2.1 (e_value=9e-24) genomic_reference:SL2.40ch03 gene_region:56300382-56304521 transcript_region:SL2.40ch03:56300382..56304521- go_terms:GO:0005515,GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 containing protein expressed (AHRD V1 **** Q10I42_ORYSJ); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016787 NbS00013585g0003.1 protein NbS00022865g0005.1 protein NbS00022865g0006.1 protein NbS00009893g0008.1 protein ; (*GB) gi|354464677|gb|AER26534.1| (e_value=1e-14) GTP-binding family protein [Carica papaya];; (*TAIR) AT1G52980.1 (e_value=3e-17) | Symbols: | GTP-binding family protein | chr1:19737493-19740201 FORWARD LENGTH=576;; (*ITAG) Solyc07g063270.2.1 (e_value=7e-16) genomic_reference:SL2.40ch07 gene_region:63008778-63014711 transcript_region:SL2.40ch07:63008778..63014711- go_terms:GO:0005515,GO:0003924 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B6TMG1_MAIZE); contains Interpro domain(s) IPR012971 NGP1, N-terminal "; GO:0005515,GO:0003924 NbS00009893g0009.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00020002g0002.1 protein NbS00004556g0002.1 protein NbS00004160g0005.1 protein NbS00004160g0006.1 protein NbS00004160g0009.1 protein NbS00004160g0010.1 protein NbS00021617g0001.1 protein ; (*ITAG) Solyc07g042790.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53607997-53618970 transcript_region:SL2.40ch07:53607997..53618970+ functional_description:"Helicase-like protein (AHRD V1 ***- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00033746g0001.1 protein NbS00006430g0001.1 protein ; (*ITAG) Solyc03g013160.2.1 (e_value=8e-13) genomic_reference:SL2.40ch03 gene_region:3275486-3277732 transcript_region:SL2.40ch03:3275486..3277732+ go_terms:GO:0015188,GO:0005302,GO:0015186 functional_description:"Amino acid transporter family protein (AHRD V1 **** D7M7A7_ARALY); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015188,GO:0005302,GO:0015186 NbS00011514g0004.1 protein NbS00011514g0006.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=2e-20) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=6e-22) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.2 (e_value=5e-22) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1040;; (*ITAG) Solyc09g010060.2.1 (e_value=4e-22) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00008093g0011.1 protein NbS00008093g0007.1 protein NbS00008093g0010.1 protein NbC24097730g0001.1 protein ; (*GB) gi|22770428|gb|AAN04576.1| (e_value=4e-53) phospholipase D beta 1 isoform, partial [Nicotiana tabacum];; (*SWP) sp|O23078|PLDB2_ARATH (e_value=2e-37) Phospholipase D beta 2 OS=Arabidopsis thaliana GN=PLDBETA2 PE=2 SV=3;; (*TAIR) AT4G00240.1 (e_value=2e-38) | Symbols: PLDBETA2 | phospholipase D beta 2 | chr4:106380-110718 REVERSE LENGTH=927;; (*ITAG) Solyc08g080130.2.1 (e_value=1e-54) genomic_reference:SL2.40ch08 gene_region:60635932-60641390 transcript_region:SL2.40ch08:60635932..60641390+ go_terms:GO:0005515,GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** Q9XGT0_GOSHI); contains Interpro domain(s) IPR011402 Phospholipase D, plant "; GO:0005515,GO:0004630 NbS00018349g0003.1 protein ; (*TAIR) AT1G35620.1 (e_value=2e-13) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440;; (*ITAG) Solyc11g019920.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9781305-9788278 transcript_region:SL2.40ch11:9781305..9788278+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00018349g0004.1 protein NbS00018349g0007.1 protein NbS00018258g0008.1 protein NbS00058358g0003.1 protein ; (*ITAG) Solyc01g094210.2.1 (e_value=4e-20) genomic_reference:SL2.40ch01 gene_region:77532371-77534840 transcript_region:SL2.40ch01:77532371..77534840+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbC24401282g0001.1 protein ; (*GB) gi|62734077|gb|AAX96186.1| (e_value=3e-48) Endomembrane protein 70 [Oryza sativa Japonica Group];; (*SWP) sp|Q9HD45|TM9S3_HUMAN (e_value=6e-32) Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2;; (*TAIR) AT1G10950.1 (e_value=6e-50) | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | chr1:3659322-3663622 FORWARD LENGTH=589;; (*ITAG) Solyc11g022540.1.1 (e_value=2e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:14402969-14411888 transcript_region:SL2.40ch11:14402969..14411888- go_terms:GO:0016021 functional_description:"Transmembrane 9 superfamily protein member 3 (AHRD V1 ***- B6SY54_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0016021 NbS00010595g0004.1 protein NbS00030657g0002.1 protein ; (*GB) gi|57116144|gb|AAW33596.1| (e_value=4e-92) Dad1/CCD8 [Petunia x hybrida];; (*SWP) sp|Q8VY26|CCD8_ARATH (e_value=5e-78) Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=2 SV=1;; (*TAIR) AT4G32810.1 (e_value=4e-79) | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570;; (*ITAG) Solyc08g066650.2.1 (e_value=4e-95) genomic_reference:SL2.40ch08 gene_region:52620195-52623269 transcript_region:SL2.40ch08:52620195..52623269- go_terms:GO:0003834 functional_description:"Carotenoid cleavage dioxygenase 8"; GO:0003834 NbS00002316g0003.1 protein NbS00049157g0004.1 protein NbC24280181g0001.1 protein ; (*GB) gi|28392910|gb|AAO41891.1| (e_value=7e-43) putative selenium-binding protein [Arabidopsis thaliana];; (*SWP) sp|Q9SI53|PP147_ARATH (e_value=2e-44) Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1;; (*TAIR) AT2G03880.1 (e_value=2e-45) | Symbols: REME1 | Pentatricopeptide repeat (PPR) superfamily protein | chr2:1181560-1183452 FORWARD LENGTH=630;; (*ITAG) Solyc12g096680.1.1 (e_value=3e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63849268-63851232 transcript_region:SL2.40ch12:63849268..63851232- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4A8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00038683g0003.1 protein NbS00017908g0003.1 protein ; (*ITAG) Solyc07g041360.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49857890-49858318 transcript_region:SL2.40ch07:49857890..49858318- functional_description:"Unknown Protein (AHRD V1)"; NbS00019641g0011.1 protein ; (*ITAG) Solyc01g105790.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85594175-85595480 transcript_region:SL2.40ch01:85594175..85595480- functional_description:"Unknown Protein (AHRD V1)"; NbS00029721g0004.1 protein NbS00027609g0004.1 protein ; (*GB) gi|359475915|ref|XP_002277778.2| (e_value=5e-23) PREDICTED: histidine-containing phosphotransfer protein 4-like [Vitis vinifera];; (*SWP) sp|Q9LU15|AHP4_ARATH (e_value=4e-20) Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2;; (*TAIR) AT3G16360.2 (e_value=4e-25) | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145;; (*ITAG) Solyc11g070150.1.1 (e_value=2e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51751629-51754234 transcript_region:SL2.40ch11:51751629..51754234- go_terms:GO:0000160 functional_description:"Histidine phosphotransfer protein (AHRD V1 ***- B9GGM6_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0000160 NbS00058858g0003.1 protein NbS00000739g0005.1 protein NbS00021790g0001.1 protein ; (*GB) gi|255564808|ref|XP_002523398.1| (e_value=1e-23) glucosidase II beta subunit, putative [Ricinus communis];; (*SWP) sp|O08795|GLU2B_MOUSE (e_value=2e-14) Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1;; (*TAIR) AT5G56360.1 (e_value=2e-24) | Symbols: PSL4 | calmodulin-binding protein | chr5:22823586-22827950 REVERSE LENGTH=647;; (*ITAG) Solyc12g099660.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65054811-65063399 transcript_region:SL2.40ch12:65054811..65063399+ go_terms:GO:0005515 functional_description:"Glucosidase 2 subunit beta (AHRD V1 *--- B6K4H4_SCHJY); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0005515 NbS00031926g0001.1 protein NbS00007387g0005.1 protein NbS00007387g0006.1 protein NbC26296682g0001.1 protein NbS00029446g0005.1 protein NbS00056043g0003.1 protein NbS00043355g0004.1 protein NbS00017998g0003.1 protein NbS00043981g0003.1 protein NbS00002714g0005.1 protein NbS00014753g0014.1 protein NbS00014753g0015.1 protein NbS00029638g0005.1 protein NbS00016298g0002.1 protein ; (*GB) gi|255582775|ref|XP_002532163.1| (e_value=4e-19) DNA-damage-inducible protein f, putative [Ricinus communis];; (*SWP) sp|Q9SFB0|FRD3_ARATH (e_value=1e-16) MATE efflux family protein FRD3 OS=Arabidopsis thaliana GN=FRD3 PE=1 SV=1;; (*TAIR) AT3G08040.2 (e_value=8e-18) | Symbols: FRD3, MAN1, ATFRD3 | MATE efflux family protein | chr3:2566593-2569397 REVERSE LENGTH=526;; (*ITAG) Solyc01g087150.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:73849052-73851926 transcript_region:SL2.40ch01:73849052..73851926+ go_terms:GO:0005215 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0005215 NbS00038234g0002.1 protein NbS00026146g0008.1 protein ; (*GB) gi|224130736|ref|XP_002328363.1| (e_value=7e-21) predicted protein [Populus trichocarpa];; (*SWP) sp|O81154|CYSK_SOLTU (e_value=8e-22) Cysteine synthase OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G04940.1 (e_value=7e-19) | Symbols: ATCYSD1, CYSD1 | cysteine synthase D1 | chr3:1365681-1367508 FORWARD LENGTH=324;; (*ITAG) Solyc09g082060.2.1 (e_value=3e-22) genomic_reference:SL2.40ch09 gene_region:63298831-63303187 transcript_region:SL2.40ch09:63298831..63303187+ go_terms:GO:0004124 functional_description:"Cysteine synthase (AHRD V1 **** Q3LAG5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0004124 NbS00052773g0006.1 protein NbS00052773g0007.1 protein ; (*GB) gi|225430870|ref|XP_002269408.1| (e_value=0.0) PREDICTED: wall-associated receptor kinase-like 4-like [Vitis vinifera];; (*SWP) sp|Q9SFT7|Y3707_ARATH (e_value=5e-45) Serine/threonine-protein kinase At3g07070 OS=Arabidopsis thaliana GN=At3g07070 PE=2 SV=1;; (*TAIR) AT2G23770.1 (e_value=2e-149) | Symbols: | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein | chr2:10120242-10122080 REVERSE LENGTH=612;; (*ITAG) Solyc02g089900.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:46162355-46164292 transcript_region:SL2.40ch02:46162355..46164292+ go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM35_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00016897g0010.1 protein NbS00020301g0005.1 protein NbS00020301g0006.1 protein NbS00020301g0007.1 protein NbS00015779g0004.1 protein ; (*GB) gi|255573083|ref|XP_002527471.1| (e_value=6e-16) Type 2A phosphatase activator TIP41, putative [Ricinus communis];; (*ITAG) Solyc10g049850.1.1 (e_value=2e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:42439242-42449952 transcript_region:SL2.40ch10:42439242..42449952+ go_terms:GO:0005515 functional_description:"TIP41-like protein (AHRD V1 ***- B2XBN7_SALSA); contains Interpro domain(s) IPR007303 TIP41-like protein "; GO:0005515 NbS00015779g0006.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=3e-13) RNase H family protein [Solanum demissum]; NbS00015779g0109.1 protein NbS00006881g0005.1 protein NbS00006881g0006.1 protein NbS00006881g0103.1 protein NbS00006881g0205.1 protein NbS00006881g0208.1 protein NbS00039010g0009.1 protein NbS00039010g0010.1 protein NbS00007524g0003.1 protein NbS00025706g0004.1 protein ; (*TAIR) AT3G20870.1 (e_value=2e-11) | Symbols: ZTP29 | ZIP metal ion transporter family | chr3:7309499-7312476 REVERSE LENGTH=276;; (*ITAG) Solyc11g062020.1.1 (e_value=9e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:45879662-45889979 transcript_region:SL2.40ch11:45879662..45889979+ go_terms:GO:0016020 functional_description:"Zinc transporter ZupT (AHRD V1 ***- B8L9G2_9GAMM); contains Interpro domain(s) IPR003689 Zinc/iron permease "; GO:0016020 NbS00025706g0007.1 protein ; (*GB) gi|199601718|dbj|BAG70977.1| (e_value=5e-20) glycosyl transferase family 2 protein [Musa balbisiana];; (*ITAG) Solyc11g069560.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00028109g0001.1 protein ; (*ITAG) Solyc08g065980.2.1 (e_value=1e-14) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00020459g0005.1 protein NbS00012356g0006.1 protein NbS00013244g0002.1 protein ; (*GB) gi|225449284|ref|XP_002276823.1| (e_value=4e-17) PREDICTED: UDP-glycosyltransferase 85A1-like [Vitis vinifera];; (*ITAG) Solyc03g078800.2.1 (e_value=5e-16) genomic_reference:SL2.40ch03 gene_region:45033923-45035554 transcript_region:SL2.40ch03:45033923..45035554+ go_terms:GO:0008152 functional_description:"Glucosyltransferase-2 (AHRD V1 ***- Q8S9A7_PHAAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00015355g0004.1 protein NbS00036300g0001.1 protein NbS00050740g0002.1 protein NbS00033416g0005.1 protein NbS00033578g0005.1 protein NbS00005663g0002.1 protein ; (*GB) gi|224130396|ref|XP_002328598.1| (e_value=8e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT3G16730.1 (e_value=2e-24) | Symbols: | CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). | chr3:5695633-5698863 REVERSE LENGTH=683;; (*ITAG) Solyc12g099420.1.1 (e_value=3e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00028344g0006.1 protein NbS00028344g0007.1 protein NbS00022697g0006.1 protein ; (*GB) gi|350540074|ref|NP_001234378.1| (e_value=1e-36) PETROSELINUM [Solanum lycopersicum];; (*TAIR) AT1G14760.2 (e_value=2e-15) | Symbols: KNATM | KNOX Arabidopsis thaliana meinox | chr1:5084530-5085213 REVERSE LENGTH=138;; (*ITAG) Solyc06g072480.1.1 (e_value=2e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41092575-41094181 transcript_region:SL2.40ch06:41092575..41094181- go_terms:GO:0005634 functional_description:"Knotted-like homeobox protein (AHRD V1 *--- Q49RB7_POPTO); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634 NbS00022697g0008.1 protein NbS00039888g0003.1 protein NbS00014617g0003.1 protein ; (*GB) gi|225435754|ref|XP_002285720.1| (e_value=5e-36) PREDICTED: importin-5 [Vitis vinifera];; (*TAIR) AT5G19820.1 (e_value=2e-32) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00014617g0004.1 protein ; (*GB) gi|224056978|ref|XP_002299105.1| (e_value=2e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|O74476|IMB3_SCHPO (e_value=5e-18) Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=2 SV=1;; (*TAIR) AT5G19820.1 (e_value=8e-45) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=3e-49) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00014617g0005.1 protein ; (*GB) gi|357508693|ref|XP_003624635.1| (e_value=3e-45) Ran-binding protein [Medicago truncatula];; (*SWP) sp|Q8BKC5|IPO5_MOUSE (e_value=4e-18) Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3;; (*TAIR) AT5G19820.1 (e_value=5e-46) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=6e-47) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00015015g0003.1 protein NbS00025805g0004.1 protein NbS00008521g0006.1 protein NbS00009385g0008.1 protein NbC25635013g0001.1 protein ; (*GB) gi|359473118|ref|XP_002285440.2| (e_value=5e-19) PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera];; (*TAIR) AT1G24560.1 (e_value=7e-16) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49055.1); Has 71940 Blast hits to 38124 proteins in 2481 species: Archae - 1358; Bacteria - 12126; Metazoa - 32861; Fungi - 6786; Plants - 4024; Viruses - 195; Other Eukaryotes - 14590 (source: NCBI BLink). | chr1:8702644-8705640 FORWARD LENGTH=678;; (*ITAG) Solyc05g013780.2.1 (e_value=1e-28) genomic_reference:SL2.40ch05 gene_region:7090546-7096093 transcript_region:SL2.40ch05:7090546..7096093+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002629g0002.1 protein NbS00050024g0002.1 protein ; (*GB) gi|356507959|ref|XP_003522730.1| (e_value=9e-38) PREDICTED: xylulose kinase-like [Glycine max];; (*TAIR) AT5G49650.1 (e_value=5e-35) | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152898-20155574 FORWARD LENGTH=558;; (*ITAG) Solyc04g077040.2.1 (e_value=7e-45) genomic_reference:SL2.40ch04 gene_region:59592018-59597624 transcript_region:SL2.40ch04:59592018..59597624- go_terms:GO:0004856 functional_description:"Xylulose kinase (AHRD V1 ***- D7MPD2_ARALY); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0004856 NbS00050024g0003.1 protein ; (*GB) gi|388501586|gb|AFK38859.1| (e_value=3e-49) unknown [Lotus japonicus];; (*SWP) sp|Q5R830|XYLB_PONAB (e_value=9e-28) Xylulose kinase OS=Pongo abelii GN=XYLB PE=2 SV=1;; (*TAIR) AT5G49650.2 (e_value=2e-47) | Symbols: XK-2, XK2 | xylulose kinase-2 | chr5:20152898-20155093 FORWARD LENGTH=426;; (*ITAG) Solyc04g077040.2.1 (e_value=3e-64) genomic_reference:SL2.40ch04 gene_region:59592018-59597624 transcript_region:SL2.40ch04:59592018..59597624- go_terms:GO:0004856 functional_description:"Xylulose kinase (AHRD V1 ***- D7MPD2_ARALY); contains Interpro domain(s) IPR000577 Carbohydrate kinase, FGGY "; GO:0004856 NbS00019945g0001.1 protein NbS00019945g0002.1 protein NbS00019945g0003.1 protein NbS00028306g0002.1 protein NbS00017386g0004.1 protein NbS00031104g0001.1 protein NbS00019047g0007.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=4e-20) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00019047g0008.1 protein NbS00019076g0003.1 protein NbS00006275g0111.1 protein NbS00006275g0110.1 protein NbS00024365g0001.1 protein ; (*GB) gi|388510734|gb|AFK43433.1| (e_value=3e-24) unknown [Lotus japonicus];; (*SWP) sp|Q9FFI2|ATG5_ARATH (e_value=4e-22) Autophagy protein 5 OS=Arabidopsis thaliana GN=ATG5 PE=2 SV=1;; (*TAIR) AT5G17290.1 (e_value=3e-23) | Symbols: ATG5, APG5, ATATG5 | autophagy protein Apg5 family | chr5:5687160-5689821 REVERSE LENGTH=337;; (*ITAG) Solyc02g036380.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:21379877-21394103 transcript_region:SL2.40ch02:21379877..21394103+ go_terms:GO:0005215 functional_description:"Autophagy protein 5 (AHRD V1 ***- Q3MQ01_MAIZE); contains Interpro domain(s) IPR007239 Autophagy-related protein 5 "; GO:0005215 NbS00006672g0015.1 protein NbS00006672g0021.1 protein NbS00017798g0005.1 protein NbC23691240g0001.1 protein ; (*GB) gi|255561850|ref|XP_002521934.1| (e_value=9e-30) nucleic acid binding protein, putative [Ricinus communis];; (*TAIR) AT5G53060.1 (e_value=1e-27) | Symbols: | RNA-binding KH domain-containing protein | chr5:21515355-21518197 FORWARD LENGTH=652;; (*ITAG) Solyc03g082980.2.1 (e_value=4e-36) genomic_reference:SL2.40ch03 gene_region:46373895-46380618 transcript_region:SL2.40ch03:46373895..46380618+ go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **-* B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00007821g0006.1 protein NbS00027572g0001.1 protein NbC25501823g0001.1 protein ; (*GB) gi|225424981|ref|XP_002266304.1| (e_value=7e-35) PREDICTED: UDP-glycosyltransferase 82A1 [Vitis vinifera];; (*SWP) sp|Q9LHJ2|U82A1_ARATH (e_value=3e-26) UDP-glycosyltransferase 82A1 OS=Arabidopsis thaliana GN=UGT82A1 PE=2 SV=1;; (*TAIR) AT3G22250.1 (e_value=2e-27) | Symbols: | UDP-Glycosyltransferase superfamily protein | chr3:7867806-7870053 FORWARD LENGTH=461;; (*ITAG) Solyc12g006430.1.1 (e_value=5e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:911486-914398 transcript_region:SL2.40ch12:911486..914398- go_terms:GO:0008152 functional_description:"UDP-glucuronosyltransferase 1-1 (AHRD V1 *-*- UD11_HUMAN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00006365g0005.1 protein ; (*ITAG) Solyc04g081540.2.1 (e_value=3e-15) genomic_reference:SL2.40ch04 gene_region:63073475-63077797 transcript_region:SL2.40ch04:63073475..63077797+ functional_description:"Kinesin heavy chain isolog (AHRD V1 ***- B6TA17_MAIZE); contains Interpro domain(s) IPR006839 Uncharacterised protein family UPF0307 "; NbS00006365g0007.1 protein NbS00006365g0009.1 protein NbS00006365g0010.1 protein ; (*ITAG) Solyc05g006800.1.1 (e_value=5e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:1416310-1418118 transcript_region:SL2.40ch05:1416310..1418118- go_terms:GO:0004519,GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LQC4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0008116 NbS00007055g0011.1 protein NbS00007414g0011.1 protein NbS00007414g0010.1 protein NbS00042379g0003.1 protein NbS00026866g0011.1 protein NbS00026866g0006.1 protein ; (*GB) gi|294462836|gb|ADE76960.1| (e_value=5e-27) unknown [Picea sitchensis];; (*SWP) sp|Q9SA71|GLPT3_ARATH (e_value=2e-26) Putative glycerol-3-phosphate transporter 3 OS=Arabidopsis thaliana GN=At1g30560 PE=3 SV=1;; (*TAIR) AT1G30560.1 (e_value=2e-27) | Symbols: | Major facilitator superfamily protein | chr1:10824761-10826293 FORWARD LENGTH=510;; (*ITAG) Solyc06g034290.2.1 (e_value=3e-32) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00026866g0010.1 protein ; (*ITAG) Solyc02g083480.2.1 (e_value=5e-14) genomic_reference:SL2.40ch02 gene_region:41447341-41448838 transcript_region:SL2.40ch02:41447341..41448838+ go_terms:GO:0055114 functional_description:"Peroxidase (AHRD V1 ***- A9PGX3_POPTR); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0055114 NbS00004194g0004.1 protein NbS00011319g0003.1 protein NbS00011319g0101.1 protein NbS00011319g0102.1 protein NbS00002236g0101.1 protein NbS00002236g0102.1 protein NbS00028758g0008.1 protein NbS00006493g0013.1 protein NbS00003449g0010.1 protein ; (*ITAG) Solyc02g072440.2.1 (e_value=3e-18) genomic_reference:SL2.40ch02 gene_region:36219450-36223435 transcript_region:SL2.40ch02:36219450..36223435+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00050474g0001.1 protein ; (*GB) gi|255571576|ref|XP_002526734.1| (e_value=7e-17) DNA-directed RNA polymerase I largest subunit, putative [Ricinus communis];; (*TAIR) AT3G57660.1 (e_value=2e-15) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00057283g0001.1 protein ; (*ITAG) Solyc02g091230.2.1 (e_value=9e-13) genomic_reference:SL2.40ch02 gene_region:47173853-47176291 transcript_region:SL2.40ch02:47173853..47176291- go_terms:GO:0005515,GO:0004842 functional_description:"E3 ubiquitin-protein ligase MARCH2 (AHRD V1 *--* B5XFT2_SALSA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515,GO:0004842 NbS00043675g0002.1 protein ; (*GB) gi|317160885|gb|ADV04500.1| (e_value=1e-30) MLO-like protein [Capsicum annuum];; (*SWP) sp|A2YD22|MLOH1_ORYSI (e_value=7e-15) MLO protein homolog 1 OS=Oryza sativa subsp. indica GN=MLO1 PE=3 SV=2;; (*ITAG) Solyc02g077570.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37045094-37049936 transcript_region:SL2.40ch02:37045094..37049936+ go_terms:GO:0005515,GO:0016021 functional_description:"MLO-like protein 6 (AHRD V1 ***- C6EWE7_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0005515,GO:0016021 NbS00044494g0003.1 protein NbS00019773g0103.1 protein NbC25018054g0001.1 protein ; (*GB) gi|255575651|ref|XP_002528725.1| (e_value=1e-37) Purple acid phosphatase precursor, putative [Ricinus communis];; (*SWP) sp|Q9LXI7|PPA20_ARATH (e_value=4e-34) Probable purple acid phosphatase 20 OS=Arabidopsis thaliana GN=PAP20 PE=2 SV=1;; (*TAIR) AT3G52780.2 (e_value=6e-36) | Symbols: ATPAP20, PAP20 | Purple acid phosphatases superfamily protein | chr3:19561812-19564195 REVERSE LENGTH=361;; (*ITAG) Solyc09g009610.1.1 (e_value=2e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:3023290-3027216 transcript_region:SL2.40ch09:3023290..3027216+ go_terms:GO:0004722 functional_description:"Purple acid phosphatase (AHRD V1 **** B6TKL3_MAIZE); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722 NbS00001743g0004.1 protein ; (*GB) gi|156340885|ref|XP_001620583.1| (e_value=1e-12) hypothetical protein NEMVEDRAFT_v1g147690 [Nematostella vectensis]; NbS00011741g0006.1 protein NbS00049184g0004.1 protein NbS00034451g0006.1 protein NbS00034451g0007.1 protein NbS00039564g0001.1 protein NbS00020078g0002.1 protein NbS00017989g0002.1 protein NbS00007052g0003.1 protein NbS00010323g0006.1 protein NbS00041085g0003.1 protein ; (*GB) gi|388505692|gb|AFK40912.1| (e_value=3e-15) unknown [Lotus japonicus];; (*TAIR) AT5G14240.1 (e_value=5e-16) | Symbols: | Thioredoxin superfamily protein | chr5:4596223-4597568 REVERSE LENGTH=256;; (*ITAG) Solyc10g078830.1.1 (e_value=2e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59847571-59851518 transcript_region:SL2.40ch10:59847571..59851518+ functional_description:"Phosducin-like protein 3 (AHRD V1 ***- B4FF90_MAIZE); contains Interpro domain(s) IPR012335 Thioredoxin fold "; NbS00025263g0010.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=5e-32) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00056960g0002.1 protein NbS00004932g0007.1 protein NbS00006811g0103.1 protein NbS00006811g0209.1 protein NbS00014979g0008.1 protein NbS00035517g0002.1 protein NbS00001247g0010.1 protein NbS00017469g0205.1 protein NbS00017469g0206.1 protein NbS00017469g0207.1 protein NbS00021393g0002.1 protein NbS00035731g0007.1 protein NbS00047746g0003.1 protein NbS00032220g0003.1 protein NbS00060763g0002.1 protein NbS00003782g0001.1 protein NbS00001601g0002.1 protein NbS00001601g0003.1 protein NbS00001601g0104.1 protein NbS00041638g0009.1 protein NbS00014685g0001.1 protein NbS00010410g0005.1 protein NbS00010410g0006.1 protein ; (*GB) gi|225433884|ref|XP_002265131.1| (e_value=5e-34) PREDICTED: uncharacterized protein LOC100268166 [Vitis vinifera];; (*TAIR) AT3G19810.1 (e_value=9e-29) | Symbols: | Protein of unknown function (DUF177) | chr3:6877756-6878812 REVERSE LENGTH=321;; (*ITAG) Solyc02g021050.2.1 (e_value=1e-45) genomic_reference:SL2.40ch02 gene_region:12092053-12098870 transcript_region:SL2.40ch02:12092053..12098870- functional_description:"Predicted metal-binding possibly nucleic acid-binding protein (AHRD V1 *-*- D4LSP3_9FIRM); contains Interpro domain(s) IPR003772 Protein of unknown function DUF177 "; NbS00010410g0010.1 protein NbS00009657g0007.1 protein NbS00028513g0011.1 protein ; (*GB) gi|147810501|emb|CAN60890.1| (e_value=3e-14) hypothetical protein VITISV_011880 [Vitis vinifera]; NbS00017486g0005.1 protein NbS00024453g0002.1 protein NbS00011098g0007.1 protein NbS00019354g0003.1 protein ; (*GB) gi|297601626|ref|NP_001051163.2| (e_value=1e-20) Os03g0730800 [Oryza sativa Japonica Group];; (*SWP) sp|Q08853|ATC_PLAFK (e_value=2e-21) Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1;; (*TAIR) AT1G10130.1 (e_value=3e-22) | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998;; (*ITAG) Solyc07g022780.2.1 (e_value=3e-24) genomic_reference:SL2.40ch07 gene_region:21560309-21580902 transcript_region:SL2.40ch07:21560309..21580902+ go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00019366g0007.1 protein NbS00027874g0003.1 protein NbS00013243g0011.1 protein ; (*ITAG) Solyc04g009220.1.1 (e_value=6e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2705636-2708194 transcript_region:SL2.40ch04:2705636..2708194- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013243g0009.1 protein ; (*GB) gi|356574121|ref|XP_003555200.1| (e_value=2e-16) PREDICTED: pentatricopeptide repeat-containing protein At5g08305-like [Glycine max];; (*ITAG) Solyc04g009210.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2700811-2702490 transcript_region:SL2.40ch04:2700811..2702490+ go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LZR6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbC23939997g0001.1 protein ; (*GB) gi|149926822|ref|ZP_01915081.1| (e_value=5e-45) NAD-dependent aldehyde dehydrogenase [Limnobacter sp. MED105];; (*SWP) sp|Q9I6C8|CALB_PSEAE (e_value=4e-23) Probable coniferyl aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=calB PE=3 SV=1;; (*TAIR) AT1G44170.3 (e_value=9e-16) | Symbols: ALDH3H1, ALDH4 | aldehyde dehydrogenase 3H1 | chr1:16796564-16798574 REVERSE LENGTH=421;; (*ITAG) Solyc06g060250.2.1 (e_value=2e-14) genomic_reference:SL2.40ch06 gene_region:34593565-34601818 transcript_region:SL2.40ch06:34593565..34601818- go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase family protein expressed (AHRD V1 **** Q53NG8_ORYSJ); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbC25800495g0003.1 protein ; (*ITAG) Solyc03g095620.2.1 (e_value=3e-15) genomic_reference:SL2.40ch03 gene_region:50240530-50248132 transcript_region:SL2.40ch03:50240530..50248132- functional_description:"ABC-1 domain protein (AHRD V1 **-- A1TWJ2_MARAV); contains Interpro domain(s) IPR004147 ABC-1 "; NbS00025682g0006.1 protein NbS00025682g0007.1 protein NbS00000472g0104.1 protein NbS00004581g0005.1 protein ; (*GB) gi|57013939|ref|YP_173412.1| (e_value=2e-50) cytochrome oxidase subunit 2 [Nicotiana tabacum];; (*SWP) sp|P27168|COX2_DAUCA (e_value=8e-48) Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1;; (*ITAG) ATMG00160.1 (e_value=2e-45) | Symbols: COX2 | cytochrome oxidase 2 | chrM:40502-42628 REVERSE LENGTH=260;; (*ITAG) Solyc12g039010.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:37199046-37202368 transcript_region:SL2.40ch12:37199046..37202368+ go_terms:GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 functional_description:"Cytochrome c oxidase subunit 2 (AHRD V1 *-*- A8DBV5_CAPAN); contains Interpro domain(s) IPR002429 Cytochrome c oxidase subunit II C-terminal "; GO:0005840,GO:0016020,GO:0006412,GO:0016021,GO:0005507 NbS00028717g0002.1 protein ; (*GB) gi|225440444|ref|XP_002271331.1| (e_value=2e-18) PREDICTED: uncharacterized protein LOC100242633 [Vitis vinifera];; (*TAIR) AT2G37730.1 (e_value=2e-18) | Symbols: | Protein of unknown function (DUF604) | chr2:15822186-15824538 REVERSE LENGTH=532;; (*ITAG) Solyc09g011090.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4420894-4423533 transcript_region:SL2.40ch09:4420894..4423533+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8RX86_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00037918g0004.1 protein ; (*GB) gi|365222858|gb|AEW69781.1| (e_value=0.0) Hop-interacting protein THI006 [Solanum lycopersicum];; (*SWP) sp|Q9LDK9|APBLA_ARATH (e_value=0.0) Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD PE=1 SV=1;; (*TAIR) AT5G11490.1 (e_value=0.0) | Symbols: | adaptin family protein | chr5:3671964-3676144 FORWARD LENGTH=841;; (*ITAG) Solyc08g068210.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:54522106-54537913 transcript_region:SL2.40ch08:54522106..54537913+ go_terms:GO:0030276 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 ***- C5GH51_AJEDR); contains Interpro domain(s) IPR016342 Adaptor protein complex, beta subunit "; GO:0030276 NbS00006781g0003.1 protein ; (*GB) gi|356557289|ref|XP_003546950.1| (e_value=3e-28) PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Glycine max];; (*TAIR) AT3G16260.1 (e_value=2e-27) | Symbols: TRZ4 | tRNAse Z4 | chr3:5509397-5513118 FORWARD LENGTH=942;; (*ITAG) Solyc12g044370.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44729636-44735803 transcript_region:SL2.40ch12:44729636..44735803+ go_terms:GO:0016787 functional_description:"Ribonuclease Z (AHRD V1 ***- B6JX69_SCHJY); contains Interpro domain(s) IPR001279 Beta-lactamase-like "; GO:0016787 NbS00006781g0006.1 protein NbS00000613g0002.1 protein NbS00019824g0003.1 protein NbS00026662g0004.1 protein ; (*GB) gi|356497597|ref|XP_003517646.1| (e_value=9e-25) PREDICTED: uncharacterized protein LOC100803214 [Glycine max];; (*TAIR) AT2G20010.2 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF810) | chr2:8637977-8641184 REVERSE LENGTH=952;; (*ITAG) Solyc05g018180.2.1 (e_value=1e-30) genomic_reference:SL2.40ch05 gene_region:20178597-20183914 transcript_region:SL2.40ch05:20178597..20183914- functional_description:"Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00019485g0003.1 protein NbS00014642g0003.1 protein NbS00025192g0004.1 protein NbS00037402g0009.1 protein NbS00024353g0001.1 protein NbS00016459g0012.1 protein NbS00016459g0006.1 protein NbS00005773g0204.1 protein NbS00008031g0003.1 protein NbS00012067g0003.1 protein NbS00025362g0003.1 protein NbS00002178g0002.1 protein ; (*ITAG) Solyc01g103690.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00053471g0003.1 protein NbS00000025g0002.1 protein NbC24245394g0002.1 protein ; (*GB) gi|3202042|gb|AAC19402.1| (e_value=4e-28) 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum];; (*SWP) sp|P55034|PSMD4_ARATH (e_value=4e-22) 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1;; (*TAIR) AT4G38630.1 (e_value=3e-23) | Symbols: RPN10, MCB1, ATMCB1, MBP1 | regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386;; (*ITAG) Solyc02g083710.2.1 (e_value=4e-31) genomic_reference:SL2.40ch02 gene_region:41588179-41594297 transcript_region:SL2.40ch02:41588179..41594297- go_terms:GO:0005515,GO:0001653 functional_description:"26S proteasome non-ATPase regulatory subunit 4 (AHRD V1 ***- B6TK61_MAIZE); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; GO:0005515,GO:0001653 NbS00012460g0013.1 protein NbS00012460g0015.1 protein NbS00012460g0027.1 protein NbS00022232g0006.1 protein NbS00022232g0007.1 protein NbS00041201g0001.1 protein NbS00023949g0005.1 protein NbS00031380g0002.1 protein NbS00006679g0002.1 protein NbS00016919g0103.1 protein NbC23793351g0001.1 protein ; (*GB) gi|224064953|ref|XP_002301612.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT4G04340.1 (e_value=4e-23) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:2123235-2126624 FORWARD LENGTH=772;; (*ITAG) Solyc07g048110.2.1 (e_value=3e-27) genomic_reference:SL2.40ch07 gene_region:56620600-56630095 transcript_region:SL2.40ch07:56620600..56630095- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C24H6.13 (AHRD V1 **-- YA7D_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00005493g0002.1 protein ; (*GB) gi|125582933|gb|EAZ23864.1| (e_value=6e-16) hypothetical protein OsJ_07580 [Oryza sativa Japonica Group];; (*SWP) sp|Q39191|WAK1_ARATH (e_value=7e-14) Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2;; (*TAIR) AT1G21250.1 (e_value=6e-15) | Symbols: WAK1, PRO25 | cell wall-associated kinase | chr1:7439512-7441892 FORWARD LENGTH=735;; (*ITAG) Solyc09g014710.2.1 (e_value=1e-26) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00025799g0002.1 protein NbS00009805g0003.1 protein NbS00061310g0001.1 protein ; (*ITAG) Solyc01g106970.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:86432878-86434999 transcript_region:SL2.40ch01:86432878..86434999- functional_description:"F-box/kelch-repeat protein At1g57790 (AHRD V1 *-*- FBK23_ARATH)"; NbS00013093g0004.1 protein NbS00013093g0116.1 protein NbS00013093g0119.1 protein NbS00013093g0109.1 protein NbS00008757g0002.1 protein NbS00010393g0001.1 protein NbS00006105g0003.1 protein NbS00009080g0005.1 protein NbS00004539g0002.1 protein ; (*ITAG) Solyc02g080520.2.1 (e_value=8e-25) genomic_reference:SL2.40ch02 gene_region:39308828-39311483 transcript_region:SL2.40ch02:39308828..39311483- functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00060985g0005.1 protein NbS00008901g0003.1 protein NbS00012247g0004.1 protein ; (*GB) gi|147819810|emb|CAN60741.1| (e_value=2e-21) hypothetical protein VITISV_030211 [Vitis vinifera];; (*TAIR) AT3G44510.2 (e_value=4e-20) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:16108251-16111139 REVERSE LENGTH=325;; (*ITAG) Solyc01g009480.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:3702854-3706348 transcript_region:SL2.40ch01:3702854..3706348- go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **** D7LRW3_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00041024g0004.1 protein NbS00027445g0003.1 protein ; (*GB) gi|359495929|ref|XP_002272151.2| (e_value=3e-49) PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera];; (*TAIR) AT2G43465.1 (e_value=6e-39) | Symbols: | RNA-binding ASCH domain protein | chr2:18047732-18049709 REVERSE LENGTH=388;; (*ITAG) Solyc06g073130.2.1 (e_value=4e-61) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00015248g0011.1 protein NbS00015248g0012.1 protein NbS00026067g0001.1 protein NbC24186920g0001.1 protein ; (*GB) gi|225437742|ref|XP_002273486.1| (e_value=4e-43) PREDICTED: chaperone activity of bc1 complex-like, mitochondrial [Vitis vinifera];; (*SWP) sp|Q6AY19|ADCK4_RAT (e_value=2e-21) Uncharacterized aarF domain-containing protein kinase 4 OS=Rattus norvegicus GN=Adck4 PE=2 SV=1;; (*TAIR) AT4G01660.1 (e_value=2e-42) | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 1 | chr4:708652-711095 FORWARD LENGTH=623;; (*ITAG) Solyc01g068640.2.1 (e_value=7e-51) genomic_reference:SL2.40ch01 gene_region:70233998-70244981 transcript_region:SL2.40ch01:70233998..70244981+ go_terms:GO:0004672 functional_description:"Uncharacterized aarF domain-containing protein kinase 4 (AHRD V1 **-* ADCK4_RAT); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672 NbS00007306g0003.1 protein NbS00007306g0004.1 protein NbS00021638g0003.1 protein NbS00006875g0003.1 protein NbS00055297g0002.1 protein NbS00055297g0003.1 protein ; (*ITAG) Solyc07g065710.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00052888g0002.1 protein ; (*ITAG) Solyc01g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79681677-79689334 transcript_region:SL2.40ch01:79681677..79689334+ functional_description:"Polyadenylation factor I complex subunit Yth1 (CPSF subunit) (ISS) (AHRD V1 *-*- Q01E48_OSTTA); contains Interpro domain(s) IPR019496 Nuclear fragile X mental retardation-interacting protein 1, conserved region "; NbS00002275g0005.1 protein NbS00027686g0004.1 protein NbS00024464g0003.1 protein ; (*GB) gi|255554130|ref|XP_002518105.1| (e_value=1e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G04900.1 (e_value=4e-27) | Symbols: | Protein of unknown function (DUF185) | chr1:1383912-1387561 FORWARD LENGTH=442;; (*ITAG) Solyc12g098360.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:64230881-64238790 transcript_region:SL2.40ch12:64230881..64238790- functional_description:"Uncharacterized ACR COG1565 family protein (AHRD V1 **-- B6TEQ7_MAIZE); contains Interpro domain(s) IPR003788 Protein of unknown function DUF185 "; NbS00024464g0004.1 protein NbS00030449g0005.1 protein NbS00024327g0003.1 protein ; (*GB) gi|156339424|ref|XP_001620161.1| (e_value=1e-12) hypothetical protein NEMVEDRAFT_v1g3459 [Nematostella vectensis]; NbS00010099g0006.1 protein NbS00032231g0004.1 protein ; (*GB) gi|226506660|ref|NP_001144962.1| (e_value=3e-24) uncharacterized protein LOC100278105 [Zea mays];; (*TAIR) AT1G22630.1 (e_value=1e-24) | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:8003487-8004167 FORWARD LENGTH=110; NbS00010232g0006.1 protein NbS00010232g0008.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=7e-13) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00050513g0001.1 protein NbS00022325g0005.1 protein NbS00016777g0002.1 protein NbS00015940g0003.1 protein ; (*ITAG) Solyc02g078840.2.1 (e_value=6e-13) genomic_reference:SL2.40ch02 gene_region:38066920-38073383 transcript_region:SL2.40ch02:38066920..38073383+ go_terms:GO:0019904 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0019904 NbS00034969g0002.1 protein NbS00012392g0003.1 protein ; (*ITAG) Solyc11g071250.1.1 (e_value=6e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51865253-51870977 transcript_region:SL2.40ch11:51865253..51870977- functional_description:"EMBYO FLOWERING 1-like protein (Fragment) (AHRD V1 *-*- Q52ZP2_PEA)"; NbS00000238g0003.1 protein NbS00000238g0005.1 protein NbS00005736g0005.1 protein ; (*GB) gi|255572164|ref|XP_002527022.1| (e_value=3e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G16100.1 (e_value=3e-13) | Symbols: | Protein of unknown function (DUF789) | chr4:9105809-9107986 FORWARD LENGTH=394;; (*ITAG) Solyc05g008920.2.1 (e_value=2e-17) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00026852g0004.1 protein NbS00026852g0005.1 protein NbS00035394g0006.1 protein NbS00043018g0002.1 protein ; (*ITAG) Solyc03g117120.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:60419258-60426888 transcript_region:SL2.40ch03:60419258..60426888- go_terms:GO:0015288 functional_description:"Nucleoporin (Fragment) (AHRD V1 *--- Q677F1_HYAOR); contains Interpro domain(s) IPR007230 Peptidase S59, nucleoporin "; GO:0015288 NbS00050132g0002.1 protein ; (*GB) gi|350536507|ref|NP_001233994.1| (e_value=7e-31) proline transporter 3 [Solanum lycopersicum];; (*TAIR) AT3G55740.1 (e_value=4e-33) | Symbols: PROT2, ATPROT2 | proline transporter 2 | chr3:20695786-20698157 FORWARD LENGTH=439;; (*ITAG) Solyc05g052820.2.1 (e_value=1e-33) genomic_reference:SL2.40ch05 gene_region:62136002-62140261 transcript_region:SL2.40ch05:62136002..62140261- go_terms:GO:0015193 functional_description:"Amino acid permease-like protein proline transporter-like protein (AHRD V1 **** Q9FJ34_ARATH); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015193 NbS00024110g0004.1 protein ; (*GB) gi|255571157|ref|XP_002526529.1| (e_value=2e-18) protein transport protein sec23, putative [Ricinus communis];; (*ITAG) Solyc01g081070.2.1 (e_value=7e-26) genomic_reference:SL2.40ch01 gene_region:72907113-72928750 transcript_region:SL2.40ch01:72907113..72928750+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00024110g0005.1 protein ; (*GB) gi|242079483|ref|XP_002444510.1| (e_value=6e-17) hypothetical protein SORBIDRAFT_07g023060 [Sorghum bicolor];; (*ITAG) Solyc01g081070.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:72907113-72928750 transcript_region:SL2.40ch01:72907113..72928750+ go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00019792g0002.1 protein NbS00038943g0001.1 protein NbS00013657g0006.1 protein NbS00010872g0101.1 protein NbS00010872g0102.1 protein NbS00010872g0305.1 protein NbS00042850g0003.1 protein ; (*ITAG) Solyc11g045160.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36829423-36874249 transcript_region:SL2.40ch11:36829423..36874249+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 *-*- C0NJR3_AJECG)"; NbS00010697g0004.1 protein ; (*GB) gi|2507174|sp|P21343.2|PFPB_SOLTU (e_value=4e-20) RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase;; (*SWP) sp|P21343|PFPB_SOLTU (e_value=1e-21) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta OS=Solanum tuberosum PE=1 SV=2;; (*TAIR) AT4G04040.1 (e_value=4e-17) | Symbols: MEE51 | Phosphofructokinase family protein | chr4:1939250-1942765 FORWARD LENGTH=569;; (*ITAG) Solyc02g081160.2.1 (e_value=4e-34) genomic_reference:SL2.40ch02 gene_region:39802521-39809198 transcript_region:SL2.40ch02:39802521..39809198- go_terms:GO:0005945 functional_description:"Diphosphate-fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- D1JTA2_9BACE); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005945 NbS00010697g0007.1 protein NbS00015070g0009.1 protein NbS00003807g0011.1 protein NbS00003807g0007.1 protein NbS00016414g0003.1 protein NbS00035942g0002.1 protein NbS00017199g0011.1 protein ; (*ITAG) Solyc11g021160.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13374126-13374965 transcript_region:SL2.40ch11:13374126..13374965+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017199g0012.1 protein NbS00017199g0014.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-15) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00017199g0010.1 protein NbS00021995g0006.1 protein NbS00006853g0002.1 protein NbS00006853g0004.1 protein NbS00006853g0006.1 protein NbS00029186g0001.1 protein ; (*ITAG) Solyc07g032510.2.1 (e_value=2e-14) genomic_reference:SL2.40ch07 gene_region:39239627-39259864 transcript_region:SL2.40ch07:39239627..39259864+ functional_description:"Microspherule protein 1 (AHRD V1 *-*- Q5BJR5_RAT); contains Interpro domain(s) IPR000253 Forkhead-associated "; NbS00034050g0003.1 protein NbS00041110g0003.1 protein ; (*GB) gi|225439446|ref|XP_002266838.1| (e_value=2e-18) PREDICTED: BEL1-like homeodomain protein 1 [Vitis vinifera];; (*SWP) sp|Q38897|BEL1_ARATH (e_value=2e-16) Homeobox protein BEL1 homolog OS=Arabidopsis thaliana GN=BEL1 PE=1 SV=2;; (*TAIR) AT5G41410.1 (e_value=1e-17) | Symbols: BEL1 | POX (plant homeobox) family protein | chr5:16580424-16583770 FORWARD LENGTH=611;; (*ITAG) Solyc01g007070.2.1 (e_value=5e-21) genomic_reference:SL2.40ch01 gene_region:1602912-1606381 transcript_region:SL2.40ch01:1602912..1606381- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00002534g0002.1 protein NbS00004145g0001.1 protein NbC25491697g0001.1 protein ; (*GB) gi|356556426|ref|XP_003546527.1| (e_value=4e-24) PREDICTED: uncharacterized protein LOC100820264 [Glycine max];; (*TAIR) AT3G16250.1 (e_value=5e-19) | Symbols: NDF4 | NDH-dependent cyclic electron flow 1 | chr3:5507091-5508320 REVERSE LENGTH=204;; (*ITAG) Solyc08g083360.2.1 (e_value=1e-27) genomic_reference:SL2.40ch08 gene_region:62996571-62997740 transcript_region:SL2.40ch08:62996571..62997740+ go_terms:GO:0051536 functional_description:"Ferredoxin (AHRD V1 *-*- D8FXV1_9CYAN); contains Interpro domain(s) IPR001041 Ferredoxin "; GO:0051536 NbC24980350g0001.1 protein ; (*GB) gi|224134853|ref|XP_002321921.1| (e_value=2e-39) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9ZW95|C7352_ARATH (e_value=2e-20) Cytokinin hydroxylase OS=Arabidopsis thaliana GN=CYP735A2 PE=1 SV=1;; (*TAIR) AT5G52400.1 (e_value=9e-33) | Symbols: CYP715A1 | cytochrome P450, family 715, subfamily A, polypeptide 1 | chr5:21272949-21275509 FORWARD LENGTH=519;; (*ITAG) Solyc03g025640.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:7416725-7420801 transcript_region:SL2.40ch03:7416725..7420801- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00006084g0004.1 protein NbS00001274g0103.1 protein NbS00001274g0104.1 protein NbS00001274g0105.1 protein NbS00001274g0106.1 protein NbS00004128g0003.1 protein NbS00004128g0004.1 protein NbS00001231g0004.1 protein ; (*GB) gi|229368448|gb|ACQ59090.1| (e_value=6e-42) BTB/POZ protein [Nicotiana benthamiana];; (*SWP) sp|O82343|Y2626_ARATH (e_value=1e-13) BTB/POZ domain-containing protein At2g46260 OS=Arabidopsis thaliana GN=At2g46260 PE=2 SV=2;; (*TAIR) AT2G46260.1 (e_value=8e-15) | Symbols: | BTB/POZ/Kelch-associated protein | chr2:18996111-18998463 FORWARD LENGTH=561;; (*ITAG) Solyc01g095400.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:78429443-78434370 transcript_region:SL2.40ch01:78429443..78434370+ go_terms:GO:0005515 functional_description:"Kelch-like protein 6 (AHRD V1 *-*- B5X1S7_SALSA); contains Interpro domain(s) IPR013089 Kelch related "; GO:0005515 NbS00028040g0013.1 protein NbS00028040g0014.1 protein ; (*SWP) sp|P15722|PLY59_SOLLC (e_value=4e-16) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT1G11920.1 (e_value=1e-14) | Symbols: | Pectin lyase-like superfamily protein | chr1:4023667-4025097 REVERSE LENGTH=384;; (*ITAG) Solyc02g087670.2.1 (e_value=3e-19) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00028040g0009.1 protein NbS00028040g0010.1 protein NbS00014065g0002.1 protein NbS00017626g0001.1 protein ; (*GB) gi|255542420|ref|XP_002512273.1| (e_value=1e-14) leucine-rich repeat-containing protein, putative [Ricinus communis];; (*ITAG) Solyc01g102880.1.1 (e_value=1e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:83313053-83324485 transcript_region:SL2.40ch01:83313053..83324485- go_terms:GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 functional_description:"Tir-nbs-lrr, resistance protein"; GO:0030145,GO:0005515,GO:0045735,GO:0031224,GO:0048046,GO:0017111,GO:0006915 NbC24695664g0001.1 protein ; (*GB) gi|224144506|ref|XP_002325313.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g079260.2.1 (e_value=2e-14) genomic_reference:SL2.40ch04 gene_region:61371523-61373830 transcript_region:SL2.40ch04:61371523..61373830- go_terms:GO:0045735,GO:0016298 functional_description:"Patatin-like protein 1 (AHRD V1 ***- Q9FZ09_TOBAC); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735,GO:0016298 NbS00023193g0005.1 protein ; (*ITAG) Solyc06g084270.2.1 (e_value=6e-14) genomic_reference:SL2.40ch06 gene_region:45754284-45760253 transcript_region:SL2.40ch06:45754284..45760253+ go_terms:GO:0003924 functional_description:"GTP-binding family protein (AHRD V1 ***- D7M3D0_ARALY); contains Interpro domain(s) IPR019991 GTP-binding protein, ribosome biogenesis, YlqF "; GO:0003924 NbS00023193g0007.1 protein NbS00000806g0006.1 protein NbS00000806g0007.1 protein NbS00005102g0005.1 protein NbS00003923g0002.1 protein ; (*GB) gi|297736590|emb|CBI25461.3| (e_value=6e-27) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=6e-19) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=5e-20) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048450.2.1 (e_value=7e-43) genomic_reference:SL2.40ch06 gene_region:27551031-27564579 transcript_region:SL2.40ch06:27551031..27564579+ functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 *-*- A2ATQ4_MOUSE)"; NbS00017072g0002.1 protein NbS00041225g0001.1 protein NbS00032301g0001.1 protein ; (*GB) gi|224124576|ref|XP_002319366.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GY60|P2C52_ARATH (e_value=7e-19) Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1;; (*TAIR) AT4G03415.2 (e_value=5e-20) | Symbols: | Protein phosphatase 2C family protein | chr4:1503789-1505510 REVERSE LENGTH=468;; (*ITAG) Solyc10g008490.2.1 (e_value=4e-24) genomic_reference:SL2.40ch10 gene_region:2617871-2620080 transcript_region:SL2.40ch10:2617871..2620080+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2c (AHRD V1 ***- A6NA79_MEDTR); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00008411g0003.1 protein NbS00025812g0003.1 protein NbS00004105g0005.1 protein ; (*GB) gi|47900738|gb|AAT39310.1| (e_value=5e-40) 4,5-DOPA dioxygenase extradiol-like protein, putative [Solanum demissum];; (*SWP) sp|Q949R4|DIOXL_ARATH (e_value=2e-25) 4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1;; (*TAIR) AT4G15093.1 (e_value=1e-26) | Symbols: | catalytic LigB subunit of aromatic ring-opening dioxygenase family | chr4:8618454-8619472 FORWARD LENGTH=269;; (*ITAG) Solyc11g072550.1.1 (e_value=7e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52818309-52821064 transcript_region:SL2.40ch11:52818309..52821064+ go_terms:GO:0006725,GO:0055114 functional_description:"Extradiol ring-cleavage dioxygenase class III protein subunit B (AHRD V1 ***- B8GF38_METPE); contains Interpro domain(s) IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type "; GO:0006725,GO:0055114 NbS00014384g0004.1 protein ; (*GB) gi|27529848|dbj|BAC53939.1| (e_value=2e-15) MCM protein-like protein [Nicotiana tabacum];; (*ITAG) Solyc11g040120.1.1 (e_value=1e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:28583677-28588706 transcript_region:SL2.40ch11:28583677..28588706+ go_terms:GO:0005515 functional_description:"DNA replication licensing factor (AHRD V1 ***- Q8JGR5_DANRE); contains Interpro domain(s) IPR008045 MCM protein 2 "; GO:0005515 NbS00025873g0002.1 protein ; (*ITAG) Solyc03g097250.2.1 (e_value=8e-27) genomic_reference:SL2.40ch03 gene_region:52994945-53000265 transcript_region:SL2.40ch03:52994945..53000265- functional_description:"Chromosome 06 contig 1 DNA sequence (AHRD V1 *-*- Q016K0_OSTTA)"; NbS00039266g0005.1 protein NbS00029925g0004.1 protein ; (*GB) gi|147853458|emb|CAN80201.1| (e_value=6e-19) hypothetical protein VITISV_038543 [Vitis vinifera]; NbS00027367g0003.1 protein NbS00008195g0004.1 protein NbS00002282g0007.1 protein ; (*ITAG) Solyc03g033640.2.1 (e_value=8e-17) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00002282g0009.1 protein NbS00042335g0004.1 protein NbS00037010g0005.1 protein NbS00009751g0011.1 protein ; (*TAIR) AT1G68550.2 (e_value=8e-12) | Symbols: | Integrase-type DNA-binding superfamily protein | chr1:25725810-25726784 REVERSE LENGTH=324;; (*ITAG) Solyc08g081650.1.1 (e_value=1e-66) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:61803221-61805947 transcript_region:SL2.40ch08:61803221..61805947- go_terms:GO:0003700,GO:0016564 functional_description:"Ethylene-responsive transcription factor 4 (AHRD V1 *-** B6THY5_MAIZE); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700,GO:0016564 NbS00009751g0013.1 protein NbS00009751g0008.1 protein NbS00042694g0002.1 protein NbS00022195g0005.1 protein NbS00022195g0008.1 protein NbS00022195g0009.1 protein ; (*GB) gi|82400140|gb|ABB72809.1| (e_value=7e-16) 60S ribosomal protein L7A-like protein [Solanum tuberosum];; (*SWP) sp|P49692|RL7A1_ARATH (e_value=2e-15) 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2;; (*TAIR) AT2G47610.1 (e_value=2e-16) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc01g097760.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:80235519-80237685 transcript_region:SL2.40ch01:80235519..80237685+ go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00057202g0002.1 protein NbS00010983g0112.1 protein NbS00010983g0117.1 protein NbS00010983g0204.1 protein NbS00010983g0205.1 protein NbS00010983g0208.1 protein NbS00006702g0002.1 protein NbS00006702g0004.1 protein ; (*ITAG) Solyc07g023940.1.1 (e_value=5e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00059610g0001.1 protein NbS00025633g0005.1 protein NbS00001978g0005.1 protein NbS00007598g0003.1 protein NbS00007598g0104.1 protein NbS00025046g0004.1 protein ; (*GB) gi|284055610|pdb|3I6S|A (e_value=5e-21) Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3;; (*TAIR) AT5G67090.1 (e_value=2e-13) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr5:26774111-26776321 REVERSE LENGTH=736;; (*ITAG) Solyc01g087810.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:74457667-74460205 transcript_region:SL2.40ch01:74457667..74460205+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00025046g0007.1 protein NbS00002221g0002.1 protein NbS00011997g0002.1 protein NbS00011997g0003.1 protein NbS00011997g0008.1 protein NbS00054397g0002.1 protein NbC25529557g0001.1 protein NbS00006984g0016.1 protein NbS00011475g0111.1 protein NbS00011475g0108.1 protein NbS00024346g0005.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=4e-15) hypothetical protein VITISV_038665 [Vitis vinifera]; NbS00024346g0007.1 protein ; (*GB) gi|255551092|ref|XP_002516594.1| (e_value=1e-50) zinc finger protein, putative [Ricinus communis];; (*TAIR) AT2G25730.2 (e_value=1e-47) | Symbols: | unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. | chr2:10956751-10972729 REVERSE LENGTH=2487;; (*ITAG) Solyc08g068010.1.1 (e_value=2e-56) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:54281098-54304777 transcript_region:SL2.40ch08:54281098..54304777- functional_description:"Zinc finger FYVE domain containing 26 (AHRD V1 *-*- B9EJ71_MOUSE); contains Interpro domain(s) IPR013105 Tetratricopeptide TPR2 "; NbS00026156g0004.1 protein NbS00015330g0005.1 protein NbS00015330g0006.1 protein ; (*GB) gi|296087328|emb|CBI33702.3| (e_value=1e-33) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g092480.2.1 (e_value=6e-49) genomic_reference:SL2.40ch02 gene_region:48111360-48115386 transcript_region:SL2.40ch02:48111360..48115386+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7M5U6_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00015330g0008.1 protein NbS00015330g0009.1 protein NbS00034277g0001.1 protein NbS00060861g0002.1 protein NbS00028154g0005.1 protein NbS00028154g0007.1 protein ; (*ITAG) Solyc06g073050.2.1 (e_value=6e-18) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00044181g0004.1 protein ; (*GB) gi|356554818|ref|XP_003545739.1| (e_value=5e-81) PREDICTED: protein strawberry notch-like [Glycine max];; (*SWP) sp|A8JUV0|SBNO_DROME (e_value=1e-57) Protein strawberry notch OS=Drosophila melanogaster GN=sno PE=1 SV=1;; (*TAIR) AT1G79350.1 (e_value=7e-79) | Symbols: EMB1135 | RING/FYVE/PHD zinc finger superfamily protein | chr1:29844829-29853215 REVERSE LENGTH=1295;; (*ITAG) Solyc10g005490.2.1 (e_value=4e-91) genomic_reference:SL2.40ch10 gene_region:385399-413211 transcript_region:SL2.40ch10:385399..413211- go_terms:GO:0016564 functional_description:"Protein strawberry notch homolog 1 (AHRD V1 *-*- SBNO1_CHICK); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0016564 NbS00025862g0003.1 protein NbS00035999g0006.1 protein NbS00007062g0002.1 protein NbS00020403g0003.1 protein ; (*GB) gi|313755450|gb|ADR74216.1| (e_value=2e-30) (3S)-linalool/(E)-nerolidol /(E,E)-geranyl linalool synthase [Vitis vinifera];; (*SWP) sp|Q84UV0|LINS_ARATH (e_value=6e-29) S-(+)-linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=2;; (*TAIR) AT1G61680.1 (e_value=4e-30) | Symbols: TPS14, ATTPS14 | terpene synthase 14 | chr1:22772455-22774687 REVERSE LENGTH=569;; (*ITAG) Solyc05g026600.2.1 (e_value=1e-26) genomic_reference:SL2.40ch05 gene_region:42108328-42109523 transcript_region:SL2.40ch05:42108328..42109523+ go_terms:GO:0016829 functional_description:"(R)-limonene synthase (AHRD V1 ***- B9T537_RICCO); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbS00011845g0007.1 protein NbS00018919g0002.1 protein NbS00041394g0001.1 protein NbS00022210g0005.1 protein NbS00022210g0006.1 protein ; (*ITAG) Solyc01g104980.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:85060063-85062095 transcript_region:SL2.40ch01:85060063..85062095- functional_description:"Kelch-like protein 14 (AHRD V1 ***- B6T7I5_MAIZE); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00022210g0007.1 protein NbS00024326g0002.1 protein NbS00024326g0003.1 protein NbS00024326g0004.1 protein NbS00024326g0006.1 protein NbS00024326g0007.1 protein NbS00012244g0005.1 protein ; (*ITAG) Solyc03g083460.2.1 (e_value=6e-13) genomic_reference:SL2.40ch03 gene_region:46900432-46904401 transcript_region:SL2.40ch03:46900432..46904401+ go_terms:GO:0008270 functional_description:"RING finger protein (AHRD V1 *-*- C6EUD3_SOYBN); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00018177g0004.1 protein NbS00018177g0005.1 protein NbS00018177g0008.1 protein NbS00017135g0004.1 protein ; (*ITAG) Solyc10g085600.1.1 (e_value=4e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:64040024-64052725 transcript_region:SL2.40ch10:64040024..64052725- go_terms:GO:0005515 functional_description:"F-box/LRR-repeat protein 4 (AHRD V1 *-*- FBL4_ARATH); contains Interpro domain(s) IPR013069 BTB/POZ "; GO:0005515 NbS00053386g0002.1 protein NbS00037070g0005.1 protein ; (*ITAG) Solyc01g079230.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:70832208-70839060 transcript_region:SL2.40ch01:70832208..70839060+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KQP5_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00012965g0003.1 protein ; (*ITAG) Solyc05g008830.2.1 (e_value=2e-12) genomic_reference:SL2.40ch05 gene_region:3057292-3060357 transcript_region:SL2.40ch05:3057292..3060357+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00010210g0004.1 protein NbS00010210g0006.1 protein NbS00027430g0005.1 protein NbS00019223g0008.1 protein NbS00014166g0013.1 protein NbS00014166g0007.1 protein ; (*GB) gi|224088174|ref|XP_002308355.1| (e_value=1e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|P34540|KINH_CAEEL (e_value=5e-15) Kinesin heavy chain OS=Caenorhabditis elegans GN=unc-116 PE=2 SV=2;; (*TAIR) AT3G12020.1 (e_value=8e-54) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3827016-3834146 FORWARD LENGTH=965;; (*ITAG) Solyc03g053080.1.1 (e_value=4e-74) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:20135479-20156077 transcript_region:SL2.40ch03:20135479..20156077+ go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00002168g0001.1 protein NbS00004388g0016.1 protein NbS00004388g0023.1 protein NbS00009830g0003.1 protein NbS00021862g0003.1 protein NbS00021862g0004.1 protein NbS00012349g0005.1 protein NbS00008102g0003.1 protein ; (*GB) gi|27544456|dbj|BAC54966.1| (e_value=2e-14) pectinmethylesterase inhibitor [Actinidia deliciosa];; (*SWP) sp|P83326|PMEI_ACTDE (e_value=2e-15) Pectinesterase inhibitor OS=Actinidia deliciosa GN=PMEI PE=1 SV=2;; (*ITAG) Solyc03g112180.1.1 (e_value=9e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56728543-56729061 transcript_region:SL2.40ch03:56728543..56729061+ go_terms:GO:0046910 functional_description:"Invertase inhibitor (AHRD V1 **** A7IZL3_COFCA); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00010396g0002.1 protein NbS00032753g0101.1 protein NbS00032753g0102.1 protein NbS00032753g0103.1 protein NbS00003026g0011.1 protein NbS00003026g0014.1 protein ; (*GB) gi|255566084|ref|XP_002524030.1| (e_value=1e-95) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9LER0|PP381_ARATH (e_value=3e-63) Pentatricopeptide repeat-containing protein At5g14770, mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2 SV=2;; (*TAIR) AT5G14770.1 (e_value=3e-64) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:4772881-4775697 REVERSE LENGTH=938;; (*ITAG) Solyc01g099530.2.1 (e_value=2e-168) genomic_reference:SL2.40ch01 gene_region:81510268-81515514 transcript_region:SL2.40ch01:81510268..81515514- go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M6N0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00001184g0007.1 protein NbC24113610g0001.1 protein ; (*GB) gi|225436849|ref|XP_002270788.1| (e_value=1e-22) PREDICTED: pentatricopeptide repeat-containing protein At2g30780 [Vitis vinifera];; (*TAIR) AT2G48000.1 (e_value=1e-13) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:19639270-19640803 REVERSE LENGTH=481;; (*ITAG) Solyc07g053060.2.1 (e_value=6e-35) genomic_reference:SL2.40ch07 gene_region:58831095-58833870 transcript_region:SL2.40ch07:58831095..58833870- functional_description:"Pentatricopeptide repeat (AHRD V1 ***- Q2HRN6_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00040880g0005.1 protein NbS00040880g0006.1 protein ; (*GB) gi|224139872|ref|XP_002323318.1| (e_value=5e-82) predicted protein [Populus trichocarpa];; (*TAIR) AT2G41770.1 (e_value=3e-78) | Symbols: | Protein of unknown function (DUF288) | chr2:17424549-17427042 REVERSE LENGTH=771;; (*ITAG) Solyc04g015740.2.1 (e_value=7e-101) genomic_reference:SL2.40ch04 gene_region:6028486-6033726 transcript_region:SL2.40ch04:6028486..6033726+ functional_description:"DUF288 containing protein (AHRD V1 *-*- B3G3W8_ADIVA)"; NbS00040880g0007.1 protein ; (*ITAG) Solyc04g015760.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:6045987-6051321 transcript_region:SL2.40ch04:6045987..6051321- go_terms:GO:0005515,GO:0070773 functional_description:"Protein N-terminal glutamine amidohydrolase (AHRD V1 **** D3PGL7_9MAXI); contains Interpro domain(s) IPR019161 Protein of unknown function WDYHV "; GO:0005515,GO:0070773 NbS00025266g0002.1 protein NbS00025266g0006.1 protein NbS00017262g0004.1 protein NbC25903955g0002.1 protein ; (*GB) gi|297734046|emb|CBI15293.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc03g113350.2.1 (e_value=2e-46) genomic_reference:SL2.40ch03 gene_region:57552366-57558840 transcript_region:SL2.40ch03:57552366..57558840+ go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00006399g0012.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00006399g0007.1 protein NbS00006399g0008.1 protein NbS00003793g0005.1 protein ; (*GB) gi|242083266|ref|XP_002442058.1| (e_value=2e-15) hypothetical protein SORBIDRAFT_08g008400 [Sorghum bicolor];; (*SWP) sp|Q08480|KAD2_ORYSJ (e_value=5e-15) Adenylate kinase B OS=Oryza sativa subsp. japonica GN=ADK-B PE=2 SV=1;; (*TAIR) AT5G50370.1 (e_value=3e-14) | Symbols: | Adenylate kinase family protein | chr5:20509382-20510631 REVERSE LENGTH=248;; (*ITAG) Solyc05g014980.2.1 (e_value=4e-16) genomic_reference:SL2.40ch05 gene_region:9188640-9193694 transcript_region:SL2.40ch05:9188640..9193694- go_terms:GO:0005507 functional_description:"Adenylate kinase (AHRD V1 ***- D7MQ61_ARALY); contains Interpro domain(s) IPR006259 Adenylate kinase, subfamily "; GO:0005507 NbS00048260g0002.1 protein ; (*GB) gi|225428374|ref|XP_002280150.1| (e_value=2e-60) PREDICTED: chloride channel protein CLC-e [Vitis vinifera];; (*SWP) sp|Q8GX93|CLCE_ARATH (e_value=1e-50) Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2;; (*TAIR) AT4G35440.1 (e_value=8e-52) | Symbols: CLC-E, ATCLC-E, CLCE | chloride channel E | chr4:16836384-16839345 REVERSE LENGTH=710;; (*ITAG) Solyc01g112310.2.1 (e_value=1e-45) genomic_reference:SL2.40ch01 gene_region:90142605-90157819 transcript_region:SL2.40ch01:90142605..90157819+ go_terms:GO:0016020,GO:0055085 functional_description:"H(+)/Cl(-) exchange transporter ClcA (AHRD V1 *-*- C9PHM9_VIBFU); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0016020,GO:0055085 NbS00014834g0001.1 protein NbS00003127g0011.1 protein NbS00003127g0006.1 protein NbS00003127g0010.1 protein NbS00023638g0009.1 protein NbS00023638g0010.1 protein NbS00001892g0015.1 protein NbS00001892g0019.1 protein NbS00001892g0021.1 protein NbS00001892g0026.1 protein ; (*ITAG) Solyc06g049090.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:28855711-28860815 transcript_region:SL2.40ch06:28855711..28860815- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B0C738_ACAM1); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00001892g0030.1 protein NbS00001892g0037.1 protein NbS00001892g0038.1 protein ; (*GB) gi|147815496|emb|CAN65992.1| (e_value=6e-23) hypothetical protein VITISV_042149 [Vitis vinifera]; NbS00060566g0003.1 protein NbS00031994g0002.1 protein NbS00026109g0005.1 protein ; (*ITAG) Solyc01g049640.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:40678900-40679439 transcript_region:SL2.40ch01:40678900..40679439+ functional_description:"Polynucleotidyl transferase Ribonuclease H fold (AHRD V1 ***- A2Q617_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00019349g0002.1 protein NbS00028408g0004.1 protein NbS00002719g0202.1 protein NbS00013447g0001.1 protein ; (*ITAG) Solyc06g074800.1.1 (e_value=4e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42723596-42724576 transcript_region:SL2.40ch06:42723596..42724576- go_terms:GO:0003700 functional_description:"Cys2/His2 zinc-finger transcription factor (AHRD V1 **** Q4U318_SILLA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00004521g0008.1 protein NbS00002655g0001.1 protein NbS00019968g0002.1 protein NbS00019968g0005.1 protein ; (*GB) gi|312282321|dbj|BAJ34026.1| (e_value=3e-16) unnamed protein product [Thellungiella halophila];; (*SWP) sp|Q7DMA9|PAS1_ARATH (e_value=8e-17) Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2;; (*TAIR) AT3G54010.1 (e_value=6e-18) | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr3:20001042-20005063 FORWARD LENGTH=635;; (*ITAG) Solyc11g011420.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4485102-4493711 transcript_region:SL2.40ch11:4485102..4493711+ go_terms:GO:0006457,GO:0005488 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457,GO:0005488 NbS00025820g0004.1 protein ; (*GB) gi|255588677|ref|XP_002534682.1| (e_value=1e-22) conserved hypothetical protein [Ricinus communis]; NbS00027173g0004.1 protein ; (*GB) gi|57013941|ref|YP_173414.1| (e_value=5e-31) hypothetical protein NitaMp070 [Nicotiana tabacum]; NbS00027173g0006.1 protein ; (*ITAG) Solyc06g059810.1.1 (e_value=1e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:34103561-34110110 transcript_region:SL2.40ch06:34103561..34110110+ functional_description:"F-box family protein (AHRD V1 *-*- B9N8U5_POPTR); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00027173g0008.1 protein NbS00028034g0002.1 protein ; (*GB) gi|147860110|emb|CAN82922.1| (e_value=8e-17) hypothetical protein VITISV_033139 [Vitis vinifera]; NbS00031903g0006.1 protein NbS00054928g0001.1 protein NbS00049042g0009.1 protein NbS00007972g0008.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00020244g0003.1 protein NbS00009651g0003.1 protein NbS00009651g0107.1 protein NbS00004947g0008.1 protein NbS00004947g0009.1 protein NbS00011381g0003.1 protein ; (*GB) gi|285309969|emb|CBE71058.1| (e_value=1e-16) aconitate hydratase 2 [Citrus clementina];; (*SWP) sp|P49608|ACOC_CUCMA (e_value=1e-16) Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1;; (*TAIR) AT4G35830.1 (e_value=2e-15) | Symbols: ACO1 | aconitase 1 | chr4:16973007-16977949 REVERSE LENGTH=898;; (*ITAG) Solyc07g052350.2.1 (e_value=1e-17) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbC23654771g0001.1 protein ; (*GB) gi|255554735|ref|XP_002518405.1| (e_value=1e-32) protein with unknown function [Ricinus communis];; (*SWP) sp|Q2MHE4|HT1_ARATH (e_value=4e-31) Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1;; (*TAIR) AT1G62400.1 (e_value=4e-33) | Symbols: HT1 | Protein kinase superfamily protein | chr1:23090243-23091529 FORWARD LENGTH=345;; (*ITAG) Solyc11g012050.1.1 (e_value=1e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4992438-4996469 transcript_region:SL2.40ch11:4992438..4996469+ go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 ***- Q2HTT4_MEDTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005970g0004.1 protein NbS00008513g0002.1 protein NbS00006964g0006.1 protein NbS00030526g0007.1 protein NbS00028700g0003.1 protein NbS00028201g0006.1 protein ; (*ITAG) Solyc03g044840.1.1 (e_value=4e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00000670g0003.1 protein NbS00000670g0006.1 protein NbS00012389g0009.1 protein NbS00019148g0006.1 protein NbS00011899g0005.1 protein NbS00007873g0005.1 protein NbS00032513g0004.1 protein NbS00008728g0001.1 protein NbS00007886g0006.1 protein NbS00025108g0002.1 protein NbS00025108g0006.1 protein NbS00030224g0003.1 protein ; (*GB) gi|310696633|gb|ADP06386.1| (e_value=4e-16) AGAMOUS-LIKE2 [Capsicum annuum];; (*SWP) sp|Q40168|AG_SOLLC (e_value=4e-16) Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1;; (*ITAG) Solyc02g071730.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:35671866-35677320 transcript_region:SL2.40ch02:35671866..35677320- go_terms:GO:0005515,GO:0003700 functional_description:"MADS-box transcription factor AGAMOUS (AHRD V1 **-* Q8GTY3_HELAN); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box IPR002487 Transcription factor, K-box "; GO:0005515,GO:0003700 NbS00008067g0003.1 protein NbS00008067g0105.1 protein NbS00008745g0104.1 protein NbS00008745g0108.1 protein NbS00008745g0110.1 protein NbS00047965g0004.1 protein NbS00000959g0006.1 protein NbS00028559g0005.1 protein NbS00028559g0008.1 protein ; (*ITAG) Solyc01g080610.2.1 (e_value=5e-20) genomic_reference:SL2.40ch01 gene_region:72349907-72353281 transcript_region:SL2.40ch01:72349907..72353281- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005508 Protein of unknown function DUF313 "; NbS00032475g0010.1 protein NbS00002410g0015.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=7e-27) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00002410g0023.1 protein NbS00017276g0004.1 protein NbS00017276g0005.1 protein NbS00028091g0003.1 protein NbS00043724g0002.1 protein NbS00025743g0002.1 protein NbS00028748g0002.1 protein NbS00054036g0003.1 protein ; (*GB) gi|356497127|ref|XP_003517414.1| (e_value=2e-45) PREDICTED: leucyl-tRNA synthetase, cytoplasmic-like [Glycine max];; (*SWP) sp|Q8BMJ2|SYLC_MOUSE (e_value=1e-25) Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=2 SV=2;; (*TAIR) AT1G09620.1 (e_value=1e-42) | Symbols: | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | chr1:3113077-3116455 REVERSE LENGTH=1091;; (*ITAG) Solyc02g065300.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:31069232-31072471 transcript_region:SL2.40ch02:31069232..31072471+ go_terms:GO:0004823 functional_description:"Leucyl-tRNA synthetase (AHRD V1 **** Q5PPJ6_RAT); contains Interpro domain(s) IPR004493 Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic "; GO:0004823 NbS00015599g0005.1 protein NbS00015599g0007.1 protein NbS00059451g0008.1 protein NbS00007476g0006.1 protein NbS00010805g0002.1 protein ; (*GB) gi|296081215|emb|CBI18241.3| (e_value=5e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G09830.1 (e_value=3e-24) | Symbols: | Uncharacterised conserved protein UCP009193 | chr4:6188866-6190591 FORWARD LENGTH=191;; (*ITAG) Solyc12g056630.1.1 (e_value=9e-29) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47968363-47975402 transcript_region:SL2.40ch12:47968363..47975402- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00009356g0003.1 protein NbS00017919g0004.1 protein NbS00034988g0004.1 protein NbS00005429g0005.1 protein NbS00005429g0007.1 protein NbS00005429g0010.1 protein NbS00007792g0005.1 protein NbS00030590g0007.1 protein NbS00046099g0002.1 protein NbS00058771g0004.1 protein NbS00049673g0009.1 protein NbS00049513g0006.1 protein NbS00031780g0004.1 protein NbS00050845g0001.1 protein NbS00040188g0003.1 protein NbS00023143g0011.1 protein NbS00023143g0008.1 protein ; (*GB) gi|301627781|ref|XP_002943048.1| (e_value=3e-16) PREDICTED: hypothetical protein LOC100496873 [Xenopus (Silurana) tropicalis]; NbS00043508g0002.1 protein NbS00022881g0001.1 protein NbS00033034g0009.1 protein NbS00038855g0001.1 protein NbS00047776g0004.1 protein NbS00015112g0002.1 protein NbS00003470g0008.1 protein NbS00028803g0007.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-44) hypothetical protein [Nicotiana tabacum]; NbC23760399g0001.1 protein ; (*GB) gi|52000782|sp|Q04127.1|PSBP3_TOBAC (e_value=3e-42) RecName: Full=Oxygen-evolving enhancer protein 2-3, chloroplastic; Short=OEE2; AltName: Full=23 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=23 kDa thylakoid membrane protein; AltName: Full=OEC 23 kDa subunit; Flags: Precursor;; (*SWP) sp|Q04127|PSBP3_TOBAC (e_value=1e-43) Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1;; (*TAIR) AT1G06680.1 (e_value=8e-37) | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263;; (*ITAG) Solyc07g044860.2.1 (e_value=6e-39) genomic_reference:SL2.40ch07 gene_region:55244985-55247025 transcript_region:SL2.40ch07:55244985..55247025- go_terms:GO:0008266 functional_description:"Oxygen-evolving enhancer protein 2, chloroplastic (AHRD V1 ***- PSBP_SOLLC); contains Interpro domain(s) IPR002683 Photosystem II oxygen evolving complex protein PsbP "; GO:0008266 NbS00016555g0004.1 protein NbS00021564g0002.1 protein NbS00021564g0003.1 protein NbS00014027g0002.1 protein ; (*GB) gi|356551932|ref|XP_003544326.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100793610 [Glycine max]; NbS00015145g0002.1 protein NbS00015145g0003.1 protein NbS00015145g0106.1 protein NbS00005575g0003.1 protein NbS00013225g0004.1 protein ; (*GB) gi|225445164|ref|XP_002284090.1| (e_value=4e-32) PREDICTED: uncharacterized protein LOC100268083 [Vitis vinifera];; (*ITAG) Solyc07g018370.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:10421641-10422948 transcript_region:SL2.40ch07:10421641..10422948- functional_description:"Unknown Protein (AHRD V1)"; NbS00011127g0007.1 protein NbS00038647g0012.1 protein NbS00038647g0010.1 protein NbS00008098g0002.1 protein ; (*GB) gi|357495467|ref|XP_003618022.1| (e_value=1e-35) Fimbrin/plastin-like protein [Medicago truncatula];; (*SWP) sp|Q9FKI0|FIMB2_ARATH (e_value=1e-33) Fimbrin-like protein 2 OS=Arabidopsis thaliana GN=FIM2 PE=2 SV=1;; (*TAIR) AT5G35700.1 (e_value=8e-35) | Symbols: FIM2, FIM5 | fimbrin-like protein 2 | chr5:13872833-13876432 REVERSE LENGTH=687;; (*ITAG) Solyc07g049600.2.1 (e_value=1e-38) genomic_reference:SL2.40ch07 gene_region:57259712-57265543 transcript_region:SL2.40ch07:57259712..57265543- go_terms:GO:0051015 functional_description:"Fimbrin-like potential actin filament bundling protein (AHRD V1 *--* Q5AC06_CANAL); contains Interpro domain(s) IPR016146 Calponin-homology "; GO:0051015 NbS00011505g0004.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=3e-15) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*TAIR) AT3G26040.1 (e_value=9e-13) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442; NbS00062115g0003.1 protein NbS00022036g0001.1 protein ; (*GB) gi|297810997|ref|XP_002873382.1| (e_value=2e-14) hypothetical protein ARALYDRAFT_908857 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G08770.1 (e_value=1e-13) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2855638-2856531 REVERSE LENGTH=297; NbS00000784g0003.1 protein NbS00000784g0005.1 protein NbS00003135g0005.1 protein ; (*ITAG) Solyc07g015850.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:5550737-5551592 transcript_region:SL2.40ch07:5550737..5551592- functional_description:"En/Spm transposon protein-like (AHRD V1 *-*- Q9LH00_ARATH)"; NbC23824649g0001.1 protein ; (*GB) gi|357490843|ref|XP_003615709.1| (e_value=4e-22) Chromodomain helicase-DNA-binding protein [Medicago truncatula];; (*TAIR) AT5G58610.1 (e_value=2e-19) | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=1065;; (*ITAG) Solyc06g082040.1.1 (e_value=2e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:44286246-44290100 transcript_region:SL2.40ch06:44286246..44290100+ go_terms:GO:0003677,GO:0003723,GO:0006355 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KJP0_ARALY); contains Interpro domain(s) IPR008395 Agenet "; GO:0003677,GO:0003723,GO:0006355 NbS00036424g0002.1 protein NbS00000503g0004.1 protein NbS00009171g0012.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=2e-16) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum]; NbS00009171g0016.1 protein NbS00009171g0020.1 protein NbS00009171g0008.1 protein NbS00015260g0003.1 protein NbS00015260g0004.1 protein ; (*ITAG) Solyc08g077850.1.1 (e_value=6e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00026546g0004.1 protein NbS00026546g0006.1 protein NbS00026546g0008.1 protein NbS00026546g0009.1 protein NbS00001203g0003.1 protein NbS00001203g0110.1 protein NbC26332048g0003.1 protein NbS00018488g0011.1 protein NbS00018488g0013.1 protein NbS00018488g0010.1 protein NbS00013608g0006.1 protein ; (*GB) gi|356543998|ref|XP_003540443.1| (e_value=5e-14) PREDICTED: uncharacterized protein LOC100780992 [Glycine max];; (*TAIR) AT4G27390.1 (e_value=8e-16) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13703417-13704655 REVERSE LENGTH=235;; (*ITAG) Solyc07g063530.2.1 (e_value=2e-20) genomic_reference:SL2.40ch07 gene_region:63212972-63217701 transcript_region:SL2.40ch07:63212972..63217701+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024253g0005.1 protein NbS00035191g0003.1 protein NbS00047308g0003.1 protein NbS00047308g0005.1 protein NbS00029137g0006.1 protein NbS00015992g0004.1 protein ; (*GB) gi|356569611|ref|XP_003552992.1| (e_value=1e-14) PREDICTED: putative ribosomal RNA methyltransferase NOP2-like [Glycine max];; (*TAIR) AT5G55920.1 (e_value=9e-15) | Symbols: OLI2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22645742-22649383 REVERSE LENGTH=682;; (*ITAG) Solyc07g052110.2.1 (e_value=5e-17) genomic_reference:SL2.40ch07 gene_region:57978811-57988010 transcript_region:SL2.40ch07:57978811..57988010+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p "; GO:0006364 NbS00015992g0006.1 protein ; (*ITAG) Solyc02g086750.1.1 (e_value=2e-21) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00010421g0002.1 protein NbS00010421g0003.1 protein NbS00057205g0004.1 protein ; (*GB) gi|8439539|gb|AAF74980.1|AF082890_1 (e_value=3e-16) cystathionine beta-lyase [Solanum tuberosum];; (*ITAG) Solyc10g079720.1.1 (e_value=5e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60540899-60547437 transcript_region:SL2.40ch10:60540899..60547437- go_terms:GO:0006520,GO:0071266,GO:0030170 functional_description:"Cystathionine gamma-lyase (AHRD V1 ***- C1PDC6_BACCO); contains Interpro domain(s) IPR006238 Cystathionine beta-lyase, eukaryotic "; GO:0006520,GO:0071266,GO:0030170 NbS00005109g0008.1 protein NbS00029747g0002.1 protein ; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=2e-24) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|P25306|THD1_SOLLC (e_value=2e-15) Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=2e-15) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=3e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00039492g0003.1 protein NbS00007438g0003.1 protein NbS00007438g0004.1 protein NbS00009144g0011.1 protein NbS00056078g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-29) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002975g0005.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=9e-21) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00003787g0002.1 protein NbS00022867g0002.1 protein ; (*ITAG) Solyc01g109820.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88433260-88434129 transcript_region:SL2.40ch01:88433260..88434129- go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *-*- B9QDQ8_TOXGO); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00003878g0011.1 protein NbS00003878g0004.1 protein NbS00003878g0005.1 protein NbS00003878g0010.1 protein NbS00058044g0007.1 protein NbS00008402g0013.1 protein NbS00038491g0001.1 protein NbS00017019g0001.1 protein ; (*GB) gi|224112419|ref|XP_002316183.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYM3|LOR14_ARATH (e_value=2e-19) Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180 PE=2 SV=2;; (*TAIR) AT3G56180.1 (e_value=1e-20) | Symbols: | Protein of unknown function (DUF567) | chr3:20844765-20845548 FORWARD LENGTH=204;; (*ITAG) Solyc06g050810.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:30083146-30084651 transcript_region:SL2.40ch06:30083146..30084651- functional_description:"Os03g0816700 protein (Fragment) (AHRD V1 ***- Q0DMC9_ORYSJ); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00024144g0009.1 protein NbS00021430g0005.1 protein NbS00061383g0001.1 protein NbS00012453g0008.1 protein NbS00012453g0009.1 protein NbS00013658g0004.1 protein NbS00013658g0005.1 protein NbS00033046g0005.1 protein NbS00009674g0002.1 protein ; (*GB) gi|147844086|emb|CAN80000.1| (e_value=8e-17) hypothetical protein VITISV_043971 [Vitis vinifera];; (*SWP) sp|Q42798|C93A1_SOYBN (e_value=5e-16) Cytochrome P450 93A1 OS=Glycine max GN=CYP93A1 PE=2 SV=1;; (*TAIR) AT4G37410.1 (e_value=2e-17) | Symbols: CYP81F4 | cytochrome P450, family 81, subfamily F, polypeptide 4 | chr4:17590848-17592780 FORWARD LENGTH=501;; (*ITAG) Solyc10g018150.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:6690144-6692010 transcript_region:SL2.40ch10:6690144..6692010- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00009674g0003.1 protein NbS00004334g0002.1 protein NbS00024885g0012.1 protein ; (*GB) gi|297827767|ref|XP_002881766.1| (e_value=1e-17) hypothetical protein ARALYDRAFT_483200 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G41290.1 (e_value=5e-20) | Symbols: SSL2 | strictosidine synthase-like 2 | chr2:17210599-17212904 REVERSE LENGTH=376;; (*ITAG) Solyc10g079610.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60442710-60445606 transcript_region:SL2.40ch10:60442710..60445606+ go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7LVM7_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00037680g0005.1 protein NbS00037680g0007.1 protein ; (*GB) gi|359473742|ref|XP_002271779.2| (e_value=1e-22) PREDICTED: 65-kDa microtubule-associated protein 8-like isoform 1 [Vitis vinifera];; (*ITAG) Solyc05g015320.2.1 (e_value=2e-42) genomic_reference:SL2.40ch05 gene_region:10356231-10361325 transcript_region:SL2.40ch05:10356231..10361325+ functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 ***- Q9FEV9_TOBAC); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; NbS00046190g0001.1 protein NbS00001559g0013.1 protein ; (*GB) gi|224135917|ref|XP_002322193.1| (e_value=3e-88) predicted protein [Populus trichocarpa];; (*TAIR) AT3G26600.1 (e_value=2e-67) | Symbols: ARO4 | armadillo repeat only 4 | chr3:9769889-9771736 FORWARD LENGTH=615;; (*ITAG) Solyc02g083820.1.1 (e_value=6e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:41653759-41655726 transcript_region:SL2.40ch02:41653759..41655726- go_terms:GO:0005488 functional_description:"Armadillo/beta-catenin repeat family protein (AHRD V1 **-- D7MDH4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00061390g0002.1 protein ; (*GB) gi|48057601|gb|AAT39945.1| (e_value=1e-12) Putative polyprotein, identical [Solanum demissum]; NbS00005304g0003.1 protein NbS00010622g0004.1 protein NbS00010622g0005.1 protein NbS00008453g0104.1 protein NbS00008453g0106.1 protein NbS00008453g0107.1 protein NbS00043179g0011.1 protein NbS00009109g0004.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=1e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011069g0006.1 protein NbS00025539g0001.1 protein NbC23530535g0001.1 protein ; (*GB) gi|386576426|gb|AFJ12117.1| (e_value=7e-42) glycosyltransferase, partial [Nicotiana tabacum];; (*SWP) sp|Q9ZQC6|IRX9_ARATH (e_value=2e-31) Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1;; (*TAIR) AT2G37090.1 (e_value=1e-32) | Symbols: IRX9 | Nucleotide-diphospho-sugar transferases superfamily protein | chr2:15587671-15589223 REVERSE LENGTH=351;; (*ITAG) Solyc09g007420.2.1 (e_value=2e-40) genomic_reference:SL2.40ch09 gene_region:990503-994261 transcript_region:SL2.40ch09:990503..994261- go_terms:GO:0015018 functional_description:"Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 (AHRD V1 **-* B6U0V3_MAIZE); contains Interpro domain(s) IPR005027 Glycosyl transferase, family 43 "; GO:0015018 NbS00024026g0005.1 protein NbS00024026g0006.1 protein NbS00006195g0001.1 protein NbS00006195g0002.1 protein NbS00018295g0005.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00018295g0006.1 protein NbS00002419g0005.1 protein NbS00002419g0008.1 protein NbS00048575g0003.1 protein NbS00027998g0002.1 protein ; (*GB) gi|124484389|dbj|BAF46305.1| (e_value=9e-23) pectinacetylesterase family protein [Ipomoea nil];; (*TAIR) AT4G19420.2 (e_value=5e-19) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589612 REVERSE LENGTH=365;; (*ITAG) Solyc08g075020.2.1 (e_value=3e-23) genomic_reference:SL2.40ch08 gene_region:56343208-56348032 transcript_region:SL2.40ch08:56343208..56348032+ go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00027998g0004.1 protein NbS00003038g0008.1 protein NbS00011481g0017.1 protein NbS00011481g0018.1 protein NbS00043868g0003.1 protein NbS00022926g0005.1 protein NbS00022926g0006.1 protein NbS00000215g0007.1 protein ; (*ITAG) Solyc03g113210.2.1 (e_value=4e-17) genomic_reference:SL2.40ch03 gene_region:57484817-57486106 transcript_region:SL2.40ch03:57484817..57486106+ go_terms:GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** B9I304_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00026189g0003.1 protein NbS00012046g0004.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00012974g0004.1 protein ; (*ITAG) Solyc03g093100.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00022656g0003.1 protein NbS00013265g0001.1 protein NbS00060927g0003.1 protein NbS00020855g0005.1 protein NbS00037561g0002.1 protein NbS00037561g0003.1 protein NbS00000769g0003.1 protein NbS00000769g0111.1 protein NbS00000769g0112.1 protein NbS00000769g0113.1 protein NbS00000769g0107.1 protein NbS00000769g0109.1 protein NbS00002802g0001.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=9e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g075520.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:56838057-56842836 transcript_region:SL2.40ch08:56838057..56842836- functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00015194g0001.1 protein ; (*GB) gi|18412864|ref|NP_565239.1| (e_value=4e-20) transmembrane amino acid transporter-like protein [Arabidopsis thaliana];; (*TAIR) AT1G80510.1 (e_value=9e-23) | Symbols: | Transmembrane amino acid transporter family protein | chr1:30273100-30274569 FORWARD LENGTH=489;; (*ITAG) Solyc03g117350.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:60548886-60550304 transcript_region:SL2.40ch03:60548886..60550304- go_terms:GO:0015171 functional_description:"Amino acid transporter (AHRD V1 **** B9MWM0_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00014017g0011.1 protein NbS00000336g0007.1 protein NbS00003561g0010.1 protein NbS00023749g0003.1 protein NbS00023749g0004.1 protein NbS00006252g0003.1 protein NbC25334576g0002.1 protein ; (*GB) gi|224100903|ref|XP_002312060.1| (e_value=4e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=4e-33) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT3G09550.1 (e_value=9e-37) | Symbols: | Ankyrin repeat family protein | chr3:2932007-2934199 FORWARD LENGTH=607;; (*ITAG) Solyc05g054830.2.1 (e_value=9e-50) genomic_reference:SL2.40ch05 gene_region:63788805-63793279 transcript_region:SL2.40ch05:63788805..63793279+ go_terms:GO:0042803 functional_description:"Ankyrin-repeat protein (AHRD V1 **-- A2CIR5_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0042803 NbS00015238g0004.1 protein NbS00038294g0002.1 protein NbS00004417g0003.1 protein NbS00004417g0004.1 protein ; (*ITAG) Solyc08g016600.1.1 (e_value=7e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7901088-7902621 transcript_region:SL2.40ch08:7901088..7902621- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00040459g0005.1 protein NbS00007959g0004.1 protein NbS00007959g0007.1 protein NbS00043065g0003.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=9e-33) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00043065g0004.1 protein NbS00000562g0014.1 protein NbS00032227g0006.1 protein NbS00048275g0001.1 protein ; (*GB) gi|225450356|ref|XP_002274890.1| (e_value=6e-33) PREDICTED: uncharacterized protein LOC100258075 [Vitis vinifera];; (*TAIR) AT2G32850.2 (e_value=3e-31) | Symbols: | Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=670;; (*ITAG) Solyc01g074010.2.1 (e_value=6e-41) genomic_reference:SL2.40ch01 gene_region:70578697-70582804 transcript_region:SL2.40ch01:70578697..70582804- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- C0NU81_AJECG); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00023501g0004.1 protein NbS00039457g0004.1 protein NbS00056050g0001.1 protein NbS00062233g0004.1 protein NbS00020925g0005.1 protein NbS00018457g0002.1 protein ; (*GB) gi|224105839|ref|XP_002313950.1| (e_value=8e-65) potassium efflux antiporter [Populus trichocarpa];; (*SWP) sp|Q9M0Z3|KEA3_ARATH (e_value=3e-61) K(+) efflux antiporter 3, chloroplastic OS=Arabidopsis thaliana GN=KEA3 PE=1 SV=2;; (*TAIR) AT4G04850.1 (e_value=2e-63) | Symbols: KEA3, ATKEA3 | K+ efflux antiporter 3 | chr4:2453174-2456891 FORWARD LENGTH=637;; (*ITAG) Solyc11g044260.1.1 (e_value=3e-42) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:35201175-35222560 transcript_region:SL2.40ch11:35201175..35222560- go_terms:GO:0004867,GO:0016021 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- Q73FS4_WOLPM); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0004867,GO:0016021 NbC24566898g0001.1 protein ; (*GB) gi|356460901|ref|NP_001239041.1| (e_value=6e-25) sesquiterpene synthase [Solanum lycopersicum];; (*SWP) sp|Q6Q3H2|TPSVS_VITVI (e_value=4e-16) Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1;; (*ITAG) Solyc07g052140.2.1 (e_value=4e-38) genomic_reference:SL2.40ch07 gene_region:57994754-57995894 transcript_region:SL2.40ch07:57994754..57995894- go_terms:GO:0016829 functional_description:"(-)-germacrene D synthase (AHRD V1 ***- Q64K29_9ROSI); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbC23784641g0001.1 protein ; (*GB) gi|225438426|ref|XP_002276373.1| (e_value=6e-21) PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera];; (*TAIR) AT4G35300.4 (e_value=2e-14) | Symbols: TMT2 | tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=739;; (*ITAG) Solyc03g032040.2.1 (e_value=1e-31) genomic_reference:SL2.40ch03 gene_region:8835772-8840159 transcript_region:SL2.40ch03:8835772..8840159+ go_terms:GO:0015519 functional_description:"MFS family major facilitator transporter D-xylose cation symporter (AHRD V1 *-** D4E1S5_SEROD); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0015519 NbS00020220g0001.1 protein ; (*ITAG) Solyc03g043730.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11213441-11213803 transcript_region:SL2.40ch03:11213441..11213803- functional_description:"Unknown Protein (AHRD V1)"; NbS00010306g0001.1 protein NbS00010066g0014.1 protein NbS00006609g0003.1 protein NbS00003602g0001.1 protein NbS00012034g0003.1 protein NbS00012607g0009.1 protein NbS00014643g0004.1 protein NbS00014643g0007.1 protein NbS00014978g0011.1 protein NbS00014978g0007.1 protein NbS00013645g0003.1 protein NbS00009780g0003.1 protein ; (*TAIR) AT1G15020.2 (e_value=3e-11) | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydryl oxidase 1 | chr1:5173341-5176105 REVERSE LENGTH=528;; (*ITAG) Solyc04g007610.2.1 (e_value=2e-29) genomic_reference:SL2.40ch04 gene_region:1288587-1297443 transcript_region:SL2.40ch04:1288587..1297443- go_terms:GO:0045454,GO:0055114 functional_description:"Protein disulfide-isomerase (AHRD V1 *--- P93358_TOBAC); contains Interpro domain(s) IPR006863 Erv1/Alr "; GO:0045454,GO:0055114 NbS00008560g0007.1 protein NbS00014014g0006.1 protein NbS00020583g0006.1 protein NbS00047432g0003.1 protein ; (*GB) gi|225462992|ref|XP_002264438.1| (e_value=8e-53) PREDICTED: uncharacterized protein LOC100248232 [Vitis vinifera];; (*TAIR) AT2G22650.1 (e_value=1e-53) | Symbols: | FAD-dependent oxidoreductase family protein | chr2:9624703-9626931 REVERSE LENGTH=420;; (*ITAG) Solyc07g005240.2.1 (e_value=2e-72) genomic_reference:SL2.40ch07 gene_region:213548-218992 transcript_region:SL2.40ch07:213548..218992- go_terms:GO:0016491 functional_description:"FAD-dependent oxidoreductase family protein (AHRD V1 **-- D7LAA7_ARALY); contains Interpro domain(s) IPR006076 FAD dependent oxidoreductase "; GO:0016491 NbS00047432g0004.1 protein NbS00018065g0002.1 protein NbS00018065g0004.1 protein NbS00025884g0004.1 protein NbS00025884g0006.1 protein NbS00047092g0004.1 protein NbS00047092g0006.1 protein NbS00036504g0002.1 protein NbS00007390g0006.1 protein NbS00007599g0008.1 protein NbS00007599g0009.1 protein NbS00023672g0001.1 protein NbS00022216g0001.1 protein NbS00021165g0005.1 protein NbS00021165g0006.1 protein NbS00021165g0009.1 protein ; (*GB) gi|302804566|ref|XP_002984035.1| (e_value=4e-29) hypothetical protein SELMODRAFT_119205 [Selaginella moellendorffii];; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=1e-28) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=1e-29) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc08g006600.2.1 (e_value=1e-34) genomic_reference:SL2.40ch08 gene_region:1188325-1206669 transcript_region:SL2.40ch08:1188325..1206669- go_terms:GO:0003924 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00005367g0009.1 protein NbS00003010g0004.1 protein NbS00000072g0004.1 protein NbS00000072g0005.1 protein NbS00000072g0006.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=6e-17) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00005934g0115.1 protein NbS00021597g0009.1 protein NbS00001312g0008.1 protein NbS00043424g0001.1 protein NbS00005579g0006.1 protein ; (*GB) gi|356518240|ref|XP_003527787.1| (e_value=1e-108) PREDICTED: uncharacterized protein LOC100788511 [Glycine max];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=2e-15) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT2G25320.1 (e_value=2e-94) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=8e-135) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00005579g0007.1 protein ; (*GB) gi|255548870|ref|XP_002515491.1| (e_value=1e-86) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25320.1 (e_value=2e-83) | Symbols: | TRAF-like family protein | chr2:10781951-10788065 REVERSE LENGTH=1673;; (*ITAG) Solyc06g017970.2.1 (e_value=6e-90) genomic_reference:SL2.40ch06 gene_region:12037948-12055556 transcript_region:SL2.40ch06:12037948..12055556+ functional_description:"Ubiquitin carboxyl-terminal hydrolase (Fragment) (AHRD V1 *--- D8UG84_VOLCA); contains Interpro domain(s) IPR002083 MATH "; NbS00019822g0110.1 protein NbS00016334g0002.1 protein NbS00027703g0004.1 protein NbS00027703g0006.1 protein ; (*ITAG) Solyc00g201460.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:18872394-18873456 transcript_region:SL2.40ch00:18872394..18873456- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00038726g0004.1 protein NbS00038726g0006.1 protein NbS00006944g0011.1 protein NbS00006944g0015.1 protein NbS00006944g0009.1 protein ; (*ITAG) Solyc10g080400.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61005071-61007492 transcript_region:SL2.40ch10:61005071..61007492+ functional_description:"Polychome UV-B-insensitive 4 (AHRD V1 ***- D7LI35_ARALY)"; NbS00000804g0003.1 protein ; (*GB) gi|147782026|emb|CAN63196.1| (e_value=1e-17) hypothetical protein VITISV_035792 [Vitis vinifera];; (*SWP) sp|P10978|POLX_TOBAC (e_value=3e-12) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc03g063940.1.1 (e_value=5e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:34364517-34367320 transcript_region:SL2.40ch03:34364517..34367320+ go_terms:GO:0003676,GO:0015074 functional_description:"Transposon Ty1-PL Gag-Pol polyprotein (AHRD V1 *-*- YP11B_YEAST); contains Interpro domain(s) IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase "; GO:0003676,GO:0015074 NbS00009419g0001.1 protein NbS00001322g0006.1 protein NbS00016860g0003.1 protein NbS00030729g0004.1 protein NbS00014629g0001.1 protein NbS00011783g0012.1 protein ; (*GB) gi|147815496|emb|CAN65992.1| (e_value=7e-45) hypothetical protein VITISV_042149 [Vitis vinifera]; NbS00011783g0014.1 protein NbS00011783g0007.1 protein NbS00011783g0009.1 protein NbS00006697g0004.1 protein ; (*ITAG) Solyc02g093420.2.1 (e_value=4e-18) genomic_reference:SL2.40ch02 gene_region:48873416-48876572 transcript_region:SL2.40ch02:48873416..48876572+ go_terms:GO:0003700 functional_description:"NAC domain class transcription factor (AHRD V1 *-** D9ZJ99_MALDO); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00006697g0006.1 protein NbS00009386g0002.1 protein NbS00007540g0009.1 protein NbS00007540g0010.1 protein ; (*GB) gi|147852240|emb|CAN80132.1| (e_value=1e-14) hypothetical protein VITISV_012031 [Vitis vinifera]; NbS00018489g0011.1 protein NbS00018489g0012.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=8e-16) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum]; NbS00018489g0009.1 protein NbS00001348g0005.1 protein ; (*GB) gi|13620228|emb|CAC36403.1| (e_value=3e-15) hypothetical protein [Solanum lycopersicum];; (*ITAG) Solyc10g005690.2.1 (e_value=5e-29) genomic_reference:SL2.40ch10 gene_region:557038-564501 transcript_region:SL2.40ch10:557038..564501- go_terms:GO:0005515 functional_description:"Chloride channel E (AHRD V1 ***- D3YP04_THEHA); contains Interpro domain(s) IPR001807 Chloride channel, voltage gated "; GO:0005515 NbS00001465g0007.1 protein NbS00002462g0012.1 protein NbS00006549g0001.1 protein NbS00015488g0007.1 protein NbS00025672g0004.1 protein ; (*GB) gi|21105738|gb|AAM34768.1|AF509868_1 (e_value=4e-21) nam-like protein 5 [Petunia x hybrida]; NbS00011383g0004.1 protein NbC24411639g0002.1 protein ; (*GB) gi|223939323|ref|ZP_03631203.1| (e_value=3e-12) histidine kinase [bacterium Ellin514]; NbS00026425g0005.1 protein NbS00025504g0004.1 protein NbS00052244g0001.1 protein NbS00000788g0003.1 protein NbS00013910g0002.1 protein NbS00035352g0005.1 protein NbS00008401g0015.1 protein ; (*GB) gi|356499521|ref|XP_003518588.1| (e_value=3e-13) PREDICTED: protein NLP2-like [Glycine max];; (*SWP) sp|Q9SFW8|NLP5_ARATH (e_value=1e-11) Protein NLP5 OS=Arabidopsis thaliana GN=NLP5 PE=2 SV=1;; (*TAIR) AT1G76350.1 (e_value=8e-13) | Symbols: | Plant regulator RWP-RK family protein | chr1:28640143-28642817 FORWARD LENGTH=808;; (*ITAG) Solyc08g082750.2.1 (e_value=1e-16) genomic_reference:SL2.40ch08 gene_region:62610961-62620087 transcript_region:SL2.40ch08:62610961..62620087+ go_terms:GO:0003700 functional_description:"Nodule inception protein (Fragment) (AHRD V1 *-*- A9DM78_MEDTR); contains Interpro domain(s) IPR003035 Plant regulator RWP-RK "; GO:0003700 NbS00008401g0016.1 protein NbS00008401g0006.1 protein NbS00008401g0010.1 protein NbS00005611g0008.1 protein NbS00023229g0007.1 protein NbS00007688g0005.1 protein NbS00007688g0006.1 protein NbS00052468g0002.1 protein ; (*GB) gi|255578839|ref|XP_002530274.1| (e_value=2e-15) hypothetical protein RCOM_0265760 [Ricinus communis];; (*TAIR) AT2G13840.1 (e_value=2e-12) | Symbols: | Polymerase/histidinol phosphatase-like | chr2:5788616-5791057 REVERSE LENGTH=434;; (*ITAG) Solyc11g044800.1.1 (e_value=6e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36091790-36097197 transcript_region:SL2.40ch11:36091790..36097197+ go_terms:GO:0008081 functional_description:"PHP domain-containing protein (AHRD V1 ***- D7L064_ARALY); contains Interpro domain(s) IPR003141 Polymerase and histidinol phosphatase, N-terminal "; GO:0008081 NbS00012713g0019.1 protein NbS00012713g0020.1 protein NbS00012713g0008.1 protein NbS00023557g0007.1 protein NbS00023557g0008.1 protein NbS00032036g0003.1 protein NbS00017344g0016.1 protein NbS00017344g0007.1 protein NbS00029219g0002.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=4e-51) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=4e-26) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=5e-37) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc05g014330.1.1 (e_value=4e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:8165111-8166406 transcript_region:SL2.40ch05:8165111..8166406+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* Q70G33_TOBAC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00034971g0005.1 protein NbS00022145g0008.1 protein ; (*ITAG) Solyc09g014710.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:6770179-6773312 transcript_region:SL2.40ch09:6770179..6773312+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00022145g0009.1 protein NbS00036493g0004.1 protein NbS00036493g0006.1 protein NbS00041042g0007.1 protein NbS00029279g0003.1 protein NbS00034008g0010.1 protein NbS00034716g0001.1 protein ; (*GB) gi|224088940|ref|XP_002308583.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25960.1 (e_value=2e-16) | Symbols: | Protein of Unknown Function (DUF239) | chr5:9062917-9065011 REVERSE LENGTH=352;; (*ITAG) Solyc11g070090.1.1 (e_value=7e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51710738-51716337 transcript_region:SL2.40ch11:51710738..51716337+ functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6U8T6_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbS00036928g0002.1 protein ; (*GB) gi|224060012|ref|XP_002300028.1| (e_value=3e-24) hypothetical protein POPTRDRAFT_797843 [Populus trichocarpa];; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=6e-13) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=4e-14) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g087360.2.1 (e_value=5e-49) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00036928g0003.1 protein ; (*GB) gi|225458631|ref|XP_002284804.1| (e_value=1e-17) PREDICTED: THO complex subunit 5 homolog [Vitis vinifera];; (*TAIR) AT1G45233.2 (e_value=1e-17) | Symbols: THO5, AtTHO5 | THO complex, subunit 5 | chr1:17152956-17154662 FORWARD LENGTH=452;; (*ITAG) Solyc04g078830.2.1 (e_value=1e-31) genomic_reference:SL2.40ch04 gene_region:61086208-61093163 transcript_region:SL2.40ch04:61086208..61093163+ functional_description:"THO complex subunit 5 homolog (AHRD V1 *-*- THOC5_DANRE); contains Interpro domain(s) IPR019163 THO complex, subunit 5 "; NbS00022101g0003.1 protein NbS00058708g0003.1 protein NbS00058897g0001.1 protein NbS00016653g0003.1 protein NbS00017189g0001.1 protein NbS00046046g0002.1 protein NbS00010885g0012.1 protein NbS00010885g0006.1 protein NbS00010885g0007.1 protein ; (*ITAG) Solyc03g113230.1.1 (e_value=4e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:57493306-57495929 transcript_region:SL2.40ch03:57493306..57495929- go_terms:GO:0004650 functional_description:"Polygalacturonase-like protein (AHRD V1 **-* Q9FLE3_ARATH); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00010885g0008.1 protein NbS00016702g0006.1 protein NbS00043876g0005.1 protein NbS00037875g0003.1 protein ; (*ITAG) Solyc11g010240.1.1 (e_value=8e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3293989-3299838 transcript_region:SL2.40ch11:3293989..3299838- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_HUMAN)"; GO:0003714 NbS00054911g0006.1 protein NbS00018763g0006.1 protein NbS00018763g0008.1 protein NbS00009009g0003.1 protein NbS00009009g0004.1 protein NbS00019388g0001.1 protein NbS00025089g0004.1 protein NbS00025089g0005.1 protein NbS00025089g0007.1 protein NbS00012676g0006.1 protein NbS00001664g0010.1 protein ; (*ITAG) Solyc09g061300.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:54223089-54223541 transcript_region:SL2.40ch09:54223089..54223541+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021640g0002.1 protein NbC23720052g0001.1 protein ; (*GB) gi|26984133|gb|AAN85207.1| (e_value=3e-42) DNA topoisomerase II [Nicotiana tabacum];; (*SWP) sp|P30182|TOP2_ARATH (e_value=2e-29) DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2;; (*TAIR) AT3G23890.1 (e_value=1e-30) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1473;; (*ITAG) Solyc01g087500.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:74205900-74212696 transcript_region:SL2.40ch01:74205900..74212696- go_terms:GO:0003918 functional_description:"DNA topoisomerase 2 (AHRD V1 **** Q8GSC4_TOBAC); contains Interpro domain(s) IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal "; GO:0003918 NbS00042609g0003.1 protein NbS00025803g0002.1 protein NbS00030915g0005.1 protein ; (*GB) gi|262192723|gb|ACY30431.1| (e_value=5e-52) hypothetical protein [Nicotiana tabacum];; (*SWP) sp|Q62203|SF3A2_MOUSE (e_value=1e-26) Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2;; (*TAIR) AT2G32600.1 (e_value=2e-49) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:13833779-13835525 REVERSE LENGTH=277;; (*ITAG) Solyc09g008470.2.1 (e_value=8e-54) genomic_reference:SL2.40ch09 gene_region:1916797-1921294 transcript_region:SL2.40ch09:1916797..1921294+ go_terms:GO:0005634,GO:0008270 functional_description:"Splicing factor 3a subunit 2 (AHRD V1 ***- D8U746_VOLCA); contains Interpro domain(s) IPR000690 Zinc finger, C2H2-type matrin "; GO:0005634,GO:0008270 NbS00008812g0103.1 protein NbS00008812g0203.1 protein NbS00008812g0204.1 protein NbS00017929g0009.1 protein NbS00022378g0001.1 protein NbC24115362g0001.1 protein ; (*GB) gi|26451356|dbj|BAC42778.1| (e_value=2e-26) unknown protein [Arabidopsis thaliana];; (*TAIR) AT5G15680.1 (e_value=9e-29) | Symbols: | ARM repeat superfamily protein | chr5:5101188-5110793 REVERSE LENGTH=2153;; (*ITAG) Solyc03g046450.2.1 (e_value=5e-29) genomic_reference:SL2.40ch03 gene_region:16777714-16804857 transcript_region:SL2.40ch03:16777714..16804857- go_terms:GO:0005488 functional_description:"Cell morphogenesis protein (AHRD V1 *--- C0NPN9_AJECG); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00012674g0005.1 protein ; (*ITAG) Solyc11g005390.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:308377-308943 transcript_region:SL2.40ch11:308377..308943+ functional_description:"Expressed protein (Fragment) (AHRD V1 ***- B3VWQ2_POPTN)"; NbS00012674g0006.1 protein ; (*GB) gi|54606686|dbj|BAD66709.1| (e_value=3e-17) orf177 [Beta vulgaris subsp. vulgaris]; NbS00012674g0007.1 protein NbS00012674g0008.1 protein NbS00042080g0003.1 protein NbS00031704g0011.1 protein NbS00031704g0012.1 protein NbS00031704g0021.1 protein NbS00031704g0022.1 protein NbS00031704g0024.1 protein NbS00031704g0007.1 protein NbS00031704g0008.1 protein NbS00031704g0009.1 protein NbS00032877g0005.1 protein ; (*ITAG) Solyc10g076970.1.1 (e_value=9e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59236244-59239086 transcript_region:SL2.40ch10:59236244..59239086+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00032877g0006.1 protein NbS00031626g0005.1 protein ; (*GB) gi|75318818|sp|O82039.1|SPY_PETHY (e_value=0.0) RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY;; (*SWP) sp|O82039|SPY_PETHY (e_value=0.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1;; (*TAIR) AT3G11540.1 (e_value=0.0) | Symbols: SPY | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:3632842-3637547 FORWARD LENGTH=914;; (*ITAG) Solyc09g010180.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:3556738-3572844 transcript_region:SL2.40ch09:3556738..3572844+ go_terms:GO:0016262 functional_description:"TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; GO:0016262 NbS00038190g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=8e-22) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00020104g0004.1 protein NbS00029862g0004.1 protein NbS00029862g0005.1 protein NbS00005733g0011.1 protein ; (*ITAG) Solyc12g056510.1.1 (e_value=5e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47802588-47804951 transcript_region:SL2.40ch12:47802588..47804951- go_terms:GO:0003677 functional_description:"GT-2 factor (Fragment) (AHRD V1 *--- Q8W240_SOYBN); contains Interpro domain(s) IPR017877 MYB-like "; GO:0003677 NbS00028900g0003.1 protein NbS00007152g0001.1 protein NbS00006006g0006.1 protein NbS00053762g0003.1 protein NbS00027681g0014.1 protein NbS00026310g0003.1 protein NbS00028276g0001.1 protein NbS00036261g0005.1 protein ; (*GB) gi|218190300|gb|EEC72727.1| (e_value=2e-16) hypothetical protein OsI_06337 [Oryza sativa Indica Group];; (*ITAG) Solyc01g104410.2.1 (e_value=5e-32) genomic_reference:SL2.40ch01 gene_region:84540080-84547356 transcript_region:SL2.40ch01:84540080..84547356- go_terms:GO:0005622 functional_description:"Sterol 3-beta-glucosyltransferase (AHRD V1 *-*- A4X1A3_SALTO)"; GO:0005622 NbS00036261g0008.1 protein ; (*GB) gi|255637866|gb|ACU19252.1| (e_value=3e-16) unknown [Glycine max];; (*TAIR) AT2G21870.2 (e_value=2e-14) | Symbols: MGP1 | copper ion binding;cobalt ion binding;zinc ion binding | chr2:9320612-9322618 REVERSE LENGTH=220;; (*ITAG) Solyc00g009020.2.1 (e_value=3e-24) genomic_reference:SL2.40ch00 gene_region:8742084-8746574 transcript_region:SL2.40ch00:8742084..8746574+ go_terms:GO:0008270,GO:0050897,GO:0005507 functional_description:"Mitochondrial ATP synthase (AHRD V1 ***- B6TLY8_MAIZE)"; GO:0008270,GO:0050897,GO:0005507 NbS00015652g0008.1 protein NbS00036047g0001.1 protein NbS00036047g0002.1 protein NbS00004240g0008.1 protein NbS00013107g0002.1 protein NbS00009468g0007.1 protein NbS00040129g0004.1 protein NbS00040129g0005.1 protein NbS00001801g0003.1 protein NbS00001801g0006.1 protein NbS00001801g0009.1 protein ; (*GB) gi|225441189|ref|XP_002269812.1| (e_value=1e-78) PREDICTED: uncharacterized protein LOC100250368 [Vitis vinifera];; (*SWP) sp|O28033|Y2251_ARCFU (e_value=1e-17) Protein AF_2251 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2251 PE=3 SV=1;; (*TAIR) AT5G03430.1 (e_value=1e-70) | Symbols: | phosphoadenosine phosphosulfate (PAPS) reductase family protein | chr5:849237-852867 REVERSE LENGTH=497;; (*ITAG) Solyc09g008310.2.1 (e_value=2e-93) genomic_reference:SL2.40ch09 gene_region:1757098-1772595 transcript_region:SL2.40ch09:1757098..1772595- go_terms:GO:0008152,GO:0006777 functional_description:"CinA-like protein (AHRD V1 *--- CINAL_BACFN); contains Interpro domain(s) IPR002500 Phosphoadenosine phosphosulphate reductase "; GO:0008152,GO:0006777 NbS00015393g0006.1 protein NbS00015393g0008.1 protein NbS00015393g0010.1 protein NbS00003563g0006.1 protein NbS00000057g0106.1 protein NbS00024628g0008.1 protein NbS00003716g0001.1 protein NbS00003716g0002.1 protein NbS00003716g0106.1 protein NbS00003716g0109.1 protein NbS00007098g0004.1 protein NbS00007098g0005.1 protein ; (*GB) gi|359488559|ref|XP_002275581.2| (e_value=1e-15) PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LW32|PP258_ARATH (e_value=4e-15) Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1;; (*TAIR) AT3G26782.1 (e_value=3e-16) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:9850594-9852682 FORWARD LENGTH=659;; (*ITAG) Solyc02g094480.2.1 (e_value=2e-25) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00009615g0106.1 protein NbS00009615g0107.1 protein NbS00029695g0003.1 protein NbS00020429g0005.1 protein ; (*GB) gi|225470340|ref|XP_002267812.1| (e_value=5e-38) PREDICTED: uncharacterized protein LOC100248155 [Vitis vinifera]; NbS00053640g0001.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=6e-14) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00018133g0005.1 protein NbS00018133g0006.1 protein NbS00018133g0007.1 protein ; (*GB) gi|359475558|ref|XP_003631701.1| (e_value=8e-67) PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Vitis vinifera];; (*SWP) sp|O81767|PP348_ARATH (e_value=8e-61) Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=2 SV=2;; (*TAIR) AT4G33990.1 (e_value=6e-62) | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:16290141-16292612 REVERSE LENGTH=823;; (*ITAG) Solyc11g040060.1.1 (e_value=9e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:28426014-28429431 transcript_region:SL2.40ch11:28426014..28429431- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00012369g0005.1 protein NbS00029677g0003.1 protein NbS00029677g0005.1 protein NbS00049730g0001.1 protein NbS00045670g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-12) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00026090g0002.1 protein NbS00009357g0003.1 protein NbS00032534g0001.1 protein NbS00027866g0003.1 protein NbS00040530g0005.1 protein NbS00040530g0006.1 protein NbS00040530g0007.1 protein NbS00006764g0004.1 protein NbS00006764g0005.1 protein NbS00005146g0001.1 protein NbS00006130g0012.1 protein NbS00006130g0015.1 protein NbS00007850g0004.1 protein NbS00004260g0012.1 protein NbS00004260g0014.1 protein NbS00004260g0007.1 protein ; (*TAIR) AT3G25860.1 (e_value=6e-15) | Symbols: LTA2, PLE2 | 2-oxoacid dehydrogenases acyltransferase family protein | chr3:9460632-9462585 FORWARD LENGTH=480;; (*ITAG) Solyc05g009530.2.1 (e_value=4e-16) genomic_reference:SL2.40ch05 gene_region:3737122-3743261 transcript_region:SL2.40ch05:3737122..3743261- go_terms:GO:0004742 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 **** A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0004742 NbS00004260g0009.1 protein ; (*GB) gi|225449545|ref|XP_002283725.1| (e_value=1e-21) PREDICTED: ribosomal RNA large subunit methyltransferase N [Vitis vinifera];; (*ITAG) Solyc06g030570.2.1 (e_value=1e-40) genomic_reference:SL2.40ch06 gene_region:16498440-16505098 transcript_region:SL2.40ch06:16498440..16505098+ go_terms:GO:0051536 functional_description:"Ribosomal RNA large subunit methyltransferase N (AHRD V1 ***- B5W4V1_SPIMA); contains Interpro domain(s) IPR007197 Radical SAM "; GO:0051536 NbS00005610g0003.1 protein NbS00005610g0209.1 protein NbS00013341g0006.1 protein NbS00000896g0004.1 protein NbS00000896g0005.1 protein ; (*ITAG) Solyc03g005100.2.1 (e_value=1e-13) genomic_reference:SL2.40ch03 gene_region:70646-74084 transcript_region:SL2.40ch03:70646..74084+ go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU8_ACTDE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00000896g0006.1 protein NbS00000896g0007.1 protein NbS00000896g0010.1 protein ; (*ITAG) Solyc03g005100.2.1 (e_value=6e-16) genomic_reference:SL2.40ch03 gene_region:70646-74084 transcript_region:SL2.40ch03:70646..74084+ go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU8_ACTDE); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00049359g0003.1 protein NbS00008237g0005.1 protein NbS00008237g0010.1 protein NbS00000535g0013.1 protein NbS00026137g0001.1 protein ; (*ITAG) Solyc11g010620.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbS00033563g0009.1 protein NbS00037682g0004.1 protein NbS00022136g0012.1 protein NbS00000123g0002.1 protein NbS00003798g0001.1 protein NbC23803361g0002.1 protein ; (*GB) gi|356571346|ref|XP_003553839.1| (e_value=4e-39) PREDICTED: glutamate synthase [NADH], amyloplastic-like [Glycine max];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=1e-37) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=1e-38) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=2e-41) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00058920g0002.1 protein ; (*GB) gi|124359646|gb|ABD32321.2| (e_value=1e-15) Ribonuclease H [Medicago truncatula];; (*ITAG) Solyc05g039970.1.1 (e_value=3e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00018706g0003.1 protein NbS00012578g0001.1 protein NbS00018953g0008.1 protein NbS00002468g0103.1 protein NbS00002468g0107.1 protein NbS00017951g0012.1 protein ; (*ITAG) Solyc04g080070.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:61955149-61955724 transcript_region:SL2.40ch04:61955149..61955724+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00016224g0001.1 protein NbS00049173g0002.1 protein ; (*GB) gi|359482712|ref|XP_002263562.2| (e_value=8e-96) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*SWP) sp|Q9SSQ4|FRS6_ARATH (e_value=2e-37) Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1;; (*TAIR) AT1G52520.1 (e_value=1e-38) | Symbols: FRS6 | FAR1-related sequence 6 | chr1:19565933-19568248 FORWARD LENGTH=703;; (*ITAG) Solyc06g068200.1.1 (e_value=1e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:38641511-38643830 transcript_region:SL2.40ch06:38641511..38643830- go_terms:GO:0003700,GO:0016563 functional_description:"Protein FAR1-RELATED SEQUENCE 6 (AHRD V1 ***- FRS6_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0003700,GO:0016563 NbS00049173g0003.1 protein NbS00037061g0006.1 protein ; (*GB) gi|297806069|ref|XP_002870918.1| (e_value=5e-19) hypothetical protein ARALYDRAFT_486933 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G01430.2 (e_value=2e-21) | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:176797-178010 REVERSE LENGTH=140;; (*ITAG) Solyc02g069610.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:34031707-34035220 transcript_region:SL2.40ch02:34031707..34035220+ go_terms:GO:0005515,GO:0004871 functional_description:"Protein transport protein GOT1 (AHRD V1 **-- GOT1_YEAST); contains Interpro domain(s) IPR007305 Got1-like protein "; GO:0005515,GO:0004871 NbS00044525g0002.1 protein NbS00022234g0014.1 protein NbS00022234g0017.1 protein ; (*GB) gi|356556001|ref|XP_003546316.1| (e_value=2e-14) PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max];; (*SWP) sp|Q9FGX1|ACLB2_ARATH (e_value=6e-16) ATP-citrate synthase beta chain protein 2 OS=Arabidopsis thaliana GN=ACLB-2 PE=1 SV=1;; (*TAIR) AT5G49460.1 (e_value=4e-17) | Symbols: ACLB-2 | ATP citrate lyase subunit B 2 | chr5:20055048-20058195 FORWARD LENGTH=608;; (*ITAG) Solyc12g099260.1.1 (e_value=4e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:64799719-64804216 transcript_region:SL2.40ch12:64799719..64804216- go_terms:GO:0005515,GO:0003878 functional_description:"ATP citrate lyase a-subunit (AHRD V1 **** Q93YH4_LUPAL); contains Interpro domain(s) IPR016141 Citrate synthase-like, core "; GO:0005515,GO:0003878 NbS00022234g0009.1 protein ; (*GB) gi|147861985|emb|CAN78761.1| (e_value=1e-11) hypothetical protein VITISV_003313 [Vitis vinifera]; NbS00003068g0011.1 protein NbS00003068g0013.1 protein NbS00003068g0010.1 protein NbS00014194g0001.1 protein NbS00009866g0002.1 protein ; (*ITAG) Solyc05g051590.2.1 (e_value=3e-19) genomic_reference:SL2.40ch05 gene_region:61102085-61108208 transcript_region:SL2.40ch05:61102085..61108208- go_terms:GO:0005459 functional_description:"UDP-galactose transporter (AHRD V1 **** D0NZ12_PHYIN); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0005459 NbS00011669g0004.1 protein NbS00011669g0007.1 protein ; (*GB) gi|77416941|gb|ABA81866.1| (e_value=3e-113) unknown [Solanum tuberosum];; (*SWP) sp|Q9SP35|TIM17_ARATH (e_value=6e-78) Mitochondrial import inner membrane translocase subunit Tim17 OS=Arabidopsis thaliana GN=TIM17 PE=2 SV=2;; (*TAIR) AT2G37410.2 (e_value=5e-79) | Symbols: ATTIM17-2, TIM17, TIM17-2 | translocase inner membrane subunit 17-2 | chr2:15698119-15698850 REVERSE LENGTH=243;; (*ITAG) Solyc06g082270.1.1 (e_value=9e-114) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44446250-44446960 transcript_region:SL2.40ch06:44446250..44446960- go_terms:GO:0015266,GO:0015450 functional_description:"Mitochondrial import inner membrane translocase subunit Tim17 (AHRD V1 ***- B6TP97_MAIZE); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 "; GO:0015266,GO:0015450 NbS00001236g0021.1 protein NbS00001236g0025.1 protein NbS00021998g0006.1 protein NbS00002658g0002.1 protein ; (*GB) gi|332322102|emb|CCA65997.1| (e_value=8e-13) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00039542g0004.1 protein NbS00025326g0002.1 protein NbS00005840g0001.1 protein NbS00016954g0002.1 protein NbS00001530g0002.1 protein NbS00037034g0003.1 protein NbS00001006g0013.1 protein NbS00001006g0014.1 protein NbS00001006g0016.1 protein NbS00001006g0017.1 protein NbS00001187g0007.1 protein NbS00000186g0006.1 protein NbS00040919g0001.1 protein NbS00003210g0002.1 protein NbS00020117g0007.1 protein NbS00003595g0001.1 protein ; (*GB) gi|296386|emb|CAA50575.1| (e_value=3e-19) cytochrome b5 [Nicotiana tabacum];; (*SWP) sp|P49098|CYB5_TOBAC (e_value=9e-21) Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G32720.1 (e_value=2e-16) | Symbols: B5 #4, ATCB5-B, CB5-B | cytochrome B5 isoform B | chr2:13877013-13878447 REVERSE LENGTH=134;; (*ITAG) Solyc06g007930.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:1803614-1806403 transcript_region:SL2.40ch06:1803614..1806403+ go_terms:GO:0045153,GO:0019899 functional_description:"Cytochrome b5 (AHRD V1 **** B6TTI9_MAIZE); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0045153,GO:0019899 NbS00003978g0015.1 protein ; (*ITAG) Solyc03g046320.2.1 (e_value=3e-22) genomic_reference:SL2.40ch03 gene_region:16258880-16259877 transcript_region:SL2.40ch03:16258880..16259877- functional_description:"Pollen coat-like protein (AHRD V1 ***- Q8LAM9_ARATH)"; NbS00003978g0020.1 protein NbS00003978g0024.1 protein ; (*GB) gi|255646457|gb|ACU23707.1| (e_value=1e-41) unknown [Glycine max];; (*TAIR) AT5G15900.1 (e_value=1e-37) | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189524-5192070 REVERSE LENGTH=426;; (*ITAG) Solyc02g065600.2.1 (e_value=2e-48) genomic_reference:SL2.40ch02 gene_region:31340580-31343502 transcript_region:SL2.40ch02:31340580..31343502- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00054637g0001.1 protein NbS00054637g0002.1 protein NbS00041289g0001.1 protein ; (*ITAG) Solyc04g040170.2.1 (e_value=1e-14) genomic_reference:SL2.40ch04 gene_region:31083618-31092516 transcript_region:SL2.40ch04:31083618..31092516+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerases I (AHRD V1 ***- C1FYH2_PARBD); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00051970g0005.1 protein NbS00032826g0003.1 protein NbS00006997g0002.1 protein NbS00006997g0101.1 protein NbS00006997g0102.1 protein NbS00039954g0003.1 protein NbS00039954g0004.1 protein NbS00027626g0005.1 protein NbS00009047g0002.1 protein NbS00035527g0006.1 protein NbS00035527g0007.1 protein NbC23649023g0001.1 protein ; (*GB) gi|350538981|ref|NP_001234368.1| (e_value=3e-33) D-cysteine desulfhydrase [Solanum lycopersicum];; (*SWP) sp|O57809|1A1D_PYRHO (e_value=9e-16) Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0054 PE=1 SV=2;; (*TAIR) AT1G48420.1 (e_value=7e-26) | Symbols: D-CDES, ATACD1, ACD1 | D-cysteine desulfhydrase | chr1:17896767-17898803 REVERSE LENGTH=401;; (*ITAG) Solyc03g098230.2.1 (e_value=5e-36) genomic_reference:SL2.40ch03 gene_region:54032356-54043045 transcript_region:SL2.40ch03:54032356..54043045+ go_terms:GO:0019148,GO:0005515 functional_description:"Pyridoxal phosphate-dependent enzyme D-cysteine desulfhydrase family (AHRD V1 **** D0LXJ6_HALO1); contains Interpro domain(s) IPR005966 Pyridoxal phosphate-dependent deaminase "; GO:0019148,GO:0005515 NbS00026395g0006.1 protein ; (*ITAG) Solyc07g044970.1.1 (e_value=3e-27) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:55344792-55345433 transcript_region:SL2.40ch07:55344792..55345433+ go_terms:GO:0005524 functional_description:"ATP-binding protein (P-loop) (AHRD V1 *-*- Q81HR9_BACCR); contains Interpro domain(s) IPR000623 Shikimate kinase "; GO:0005524 NbS00026395g0008.1 protein NbS00026395g0009.1 protein NbC26265174g0004.1 protein ; (*GB) gi|12331300|emb|CAC24705.1| (e_value=2e-27) MAP kinase [Nicotiana tabacum];; (*SWP) sp|Q9FJV0|M2K6_ARATH (e_value=3e-19) Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1;; (*TAIR) AT5G56580.1 (e_value=2e-20) | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase 6 | chr5:22904851-22906620 REVERSE LENGTH=356;; (*ITAG) Solyc03g119490.2.1 (e_value=5e-28) genomic_reference:SL2.40ch03 gene_region:62138086-62141226 transcript_region:SL2.40ch03:62138086..62141226+ go_terms:GO:0008545 functional_description:"Protein kinase (AHRD V1 **** C4Q4E0_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00039691g0006.1 protein NbS00037276g0001.1 protein NbS00054749g0002.1 protein NbS00008017g0013.1 protein ; (*GB) gi|255559412|ref|XP_002520726.1| (e_value=2e-26) potassium channel regulatory factor, putative [Ricinus communis];; (*ITAG) Solyc09g065280.2.1 (e_value=4e-39) genomic_reference:SL2.40ch09 gene_region:58944289-58948110 transcript_region:SL2.40ch09:58944289..58948110+ go_terms:GO:0005515,GO:0019870 functional_description:"Pre-mRNA-splicing factor 18 (AHRD V1 ***- C1BJD5_OSMMO); contains Interpro domain(s) IPR004098 Prp18 "; GO:0005515,GO:0019870 NbS00008017g0014.1 protein ; (*GB) gi|348659057|gb|AEP82766.1| (e_value=8e-28) copalyl diphosphate synthase [Solanum lycopersicum];; (*SWP) sp|O04408|KSA_PEA (e_value=3e-16) Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1;; (*ITAG) Solyc06g084240.1.1 (e_value=1e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:45708352-45713252 transcript_region:SL2.40ch06:45708352..45713252- go_terms:GO:0009905,GO:0000287 functional_description:"Ent-copalyl diphosphate synthase (Fragment) (AHRD V1 *-** B3F2U3_ORYRU); contains Interpro domain(s) IPR001906 Terpene synthase-like "; GO:0009905,GO:0000287 NbS00008017g0015.1 protein NbS00011774g0011.1 protein NbS00024935g0003.1 protein ; (*GB) gi|359475978|ref|XP_002280050.2| (e_value=7e-27) PREDICTED: putative copper-transporting ATPase PAA1-like [Vitis vinifera];; (*SWP) sp|B9DFX7|HMA8_ARATH (e_value=1e-20) Copper-transporting ATPase PAA2, chloroplastic OS=Arabidopsis thaliana GN=PAA2 PE=2 SV=1;; (*TAIR) AT5G21930.2 (e_value=8e-22) | Symbols: PAA2, HMA8 | P-type ATPase of Arabidopsis 2 | chr5:7243129-7248721 FORWARD LENGTH=883;; (*ITAG) Solyc08g061610.2.1 (e_value=2e-51) genomic_reference:SL2.40ch08 gene_region:46389278-46410833 transcript_region:SL2.40ch08:46389278..46410833- go_terms:GO:0004008 functional_description:"Copper-exporting P-type ATPase A (AHRD V1 **** COPA_STAES); contains Interpro domain(s) IPR006403 ATPase, P type, cation/copper-transporter "; GO:0004008 NbS00000431g0002.1 protein NbS00018553g0004.1 protein NbS00018553g0108.1 protein NbS00018553g0109.1 protein NbS00039027g0001.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=4e-23) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00008429g0004.1 protein NbS00008429g0005.1 protein NbS00017595g0002.1 protein NbS00007986g0005.1 protein NbS00007986g0009.1 protein NbS00004665g0004.1 protein NbS00038629g0006.1 protein ; (*GB) gi|89111299|dbj|BAE80324.1| (e_value=1e-20) cyclin D3-1 [Camellia sinensis];; (*SWP) sp|P42753|CCD31_ARATH (e_value=7e-20) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=5e-21) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc04g078470.2.1 (e_value=5e-23) genomic_reference:SL2.40ch04 gene_region:60795941-60797791 transcript_region:SL2.40ch04:60795941..60797791- go_terms:GO:0004723 functional_description:"Cyclin D3-1 (AHRD V1 ***- Q2ABE7_CAMSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004723 NbS00018348g0006.1 protein NbS00030141g0004.1 protein NbS00027527g0008.1 protein NbS00027527g0010.1 protein NbS00001041g0006.1 protein NbS00001041g0108.1 protein NbC24037598g0001.1 protein ; (*GB) gi|255548778|ref|XP_002515445.1| (e_value=2e-27) chromodomain helicase DNA binding protein, putative [Ricinus communis];; (*SWP) sp|Q9S775|PKL_ARATH (e_value=7e-24) CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1;; (*TAIR) AT2G25170.1 (e_value=5e-25) | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384;; (*ITAG) Solyc06g065730.2.1 (e_value=4e-31) genomic_reference:SL2.40ch06 gene_region:37557813-37598461 transcript_region:SL2.40ch06:37557813..37598461+ go_terms:GO:0004003 functional_description:"Chromodomain helicase DNA binding protein 3 (AHRD V1 **-* B1AR17_MOUSE); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00036343g0002.1 protein NbS00008741g0006.1 protein NbS00036770g0003.1 protein NbS00039057g0003.1 protein NbS00039057g0006.1 protein NbS00003676g0014.1 protein NbS00004655g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-21) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00014699g0008.1 protein NbS00002418g0003.1 protein NbS00002418g0004.1 protein NbS00003309g0013.1 protein NbS00003309g0014.1 protein NbS00003309g0023.1 protein NbS00003309g0025.1 protein NbC23849516g0001.1 protein ; (*GB) gi|21693562|gb|AAM75346.1|AF520810_1 (e_value=1e-33) DNA-binding protein phosphatase 2C [Nicotiana tabacum];; (*SWP) sp|Q5SMK6|P2C54_ORYSJ (e_value=5e-27) Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=1e-24) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc07g007220.2.1 (e_value=1e-36) genomic_reference:SL2.40ch07 gene_region:1957198-1960831 transcript_region:SL2.40ch07:1957198..1960831- go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00015143g0004.1 protein NbS00017073g0008.1 protein NbS00017073g0009.1 protein NbS00009853g0017.1 protein NbS00009853g0007.1 protein NbS00061695g0002.1 protein NbS00021223g0003.1 protein NbS00021223g0004.1 protein NbS00029858g0012.1 protein NbS00022163g0003.1 protein NbS00016768g0008.1 protein ; (*GB) gi|27529830|dbj|BAC53930.1| (e_value=8e-17) amidase-like protein [Nicotiana tabacum];; (*TAIR) AT5G07360.2 (e_value=1e-15) | Symbols: | Amidase family protein | chr5:2326925-2330011 REVERSE LENGTH=652;; (*ITAG) Solyc06g068690.2.1 (e_value=3e-18) genomic_reference:SL2.40ch06 gene_region:38974327-38979215 transcript_region:SL2.40ch06:38974327..38979215+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- A3HSJ3_9BACT); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00016768g0009.1 protein NbS00033296g0001.1 protein NbS00030044g0001.1 protein NbS00006668g0003.1 protein ; (*ITAG) Solyc05g006950.2.1 (e_value=3e-18) genomic_reference:SL2.40ch05 gene_region:1542784-1548453 transcript_region:SL2.40ch05:1542784..1548453+ go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 7 (AHRD V1 ***- COG7_MOUSE); contains Interpro domain(s) IPR019335 Conserved oligomeric Golgi complex, subunit 7 "; GO:0005515 NbS00008733g0003.1 protein NbS00036182g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00036182g0004.1 protein NbS00004756g0002.1 protein NbS00000470g0011.1 protein NbS00000470g0010.1 protein NbS00009200g0009.1 protein NbC25555395g0001.1 protein ; (*GB) gi|297741214|emb|CBI32165.3| (e_value=2e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g073750.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:70367164-70394906 transcript_region:SL2.40ch01:70367164..70394906+ go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00009158g0007.1 protein ; (*ITAG) Solyc02g088160.2.1 (e_value=4e-15) genomic_reference:SL2.40ch02 gene_region:44899497-44904078 transcript_region:SL2.40ch02:44899497..44904078+ functional_description:"UPF0497 membrane protein Os06g0231050 (AHRD V1 *-*- U4974_ORYSJ); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00009158g0009.1 protein NbS00027742g0010.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=4e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00029163g0004.1 protein NbS00000674g0011.1 protein NbS00005755g0002.1 protein NbS00050863g0001.1 protein ; (*ITAG) Solyc12g039050.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:37634829-37635721 transcript_region:SL2.40ch12:37634829..37635721- functional_description:"PIF-like orf1 (AHRD V1 ***- Q1WIR9_DAUCA)"; NbS00027782g0006.1 protein NbS00014976g0104.1 protein NbS00022984g0002.1 protein NbC23761219g0001.1 protein ; (*GB) gi|388498836|gb|AFK37484.1| (e_value=1e-24) unknown [Lotus japonicus];; (*TAIR) AT5G51120.1 (e_value=9e-25) | Symbols: PABN1, ATPABN1 | polyadenylate-binding protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227;; (*ITAG) Solyc10g047360.1.1 (e_value=6e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:36096199-36100555 transcript_region:SL2.40ch10:36096199..36100555- go_terms:GO:0008143,GO:0042802 functional_description:"Polyadenylate-binding protein family protein (AHRD V1 **** D7MT99_ARALY); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0008143,GO:0042802 NbS00023757g0005.1 protein NbS00030497g0006.1 protein NbS00007260g0012.1 protein NbS00019747g0002.1 protein ; (*GB) gi|225439428|ref|XP_002265325.1| (e_value=6e-20) PREDICTED: dnaJ homolog subfamily B member 13 isoform 1 [Vitis vinifera];; (*ITAG) Solyc09g005350.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00062005g0003.1 protein ; (*GB) gi|113205400|gb|AAU90303.2| (e_value=1e-18) Zinc finger containing preotein, putative [Solanum demissum];; (*ITAG) Solyc08g016290.1.1 (e_value=3e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00025088g0003.1 protein NbS00025088g0004.1 protein NbS00012385g0002.1 protein NbS00026957g0003.1 protein NbS00026957g0004.1 protein NbS00026957g0005.1 protein NbS00027141g0003.1 protein ; (*GB) gi|194753319|ref|XP_001958961.1| (e_value=3e-124) GF12641 [Drosophila ananassae];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=2e-77) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=1e-88) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=2e-92) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00016990g0007.1 protein NbS00016990g0008.1 protein ; (*GB) gi|62822992|gb|AAY15214.1| (e_value=4e-63) TGA10 transcription factor [Nicotiana tabacum];; (*SWP) sp|P23923|HBP1B_WHEAT (e_value=3e-21) Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1;; (*TAIR) AT5G06839.3 (e_value=1e-41) | Symbols: TGA10, bZIP65 | bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460;; (*ITAG) Solyc10g078670.1.1 (e_value=1e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59726600-59732997 transcript_region:SL2.40ch10:59726600..59732997- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q93XM5_ARATH); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00016691g0011.1 protein NbS00033699g0003.1 protein NbS00025792g0001.1 protein NbS00020911g0006.1 protein NbS00021174g0002.1 protein ; (*GB) gi|129560507|dbj|BAF48804.1| (e_value=8e-38) wound-responsive AP2 like factor 2 [Nicotiana tabacum];; (*SWP) sp|Q9SZ06|EF109_ARATH (e_value=5e-15) Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1;; (*TAIR) AT4G34410.1 (e_value=3e-16) | Symbols: RRTF1 | redox responsive transcription factor 1 | chr4:16451992-16452798 FORWARD LENGTH=268;; (*ITAG) Solyc10g050970.1.1 (e_value=2e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46749337-46750008 transcript_region:SL2.40ch10:46749337..46750008+ go_terms:GO:0003677 functional_description:"Ethylene responsive transcription factor 2b (AHRD V1 *-*- C0J9I6_9ROSA); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00024158g0001.1 protein NbS00037339g0001.1 protein NbS00020254g0108.1 protein NbS00020254g0109.1 protein NbS00030483g0002.1 protein NbS00026559g0003.1 protein NbS00035939g0002.1 protein NbS00042139g0010.1 protein NbS00006527g0003.1 protein NbS00020334g0011.1 protein NbS00020334g0012.1 protein ; (*GB) gi|359489114|ref|XP_002264377.2| (e_value=2e-25) PREDICTED: LOW QUALITY PROTEIN: translation initiation factor eIF-2B subunit epsilon-like [Vitis vinifera];; (*TAIR) AT2G34970.1 (e_value=1e-23) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00020334g0013.1 protein NbS00020334g0006.1 protein ; (*GB) gi|255542434|ref|XP_002512280.1| (e_value=1e-26) eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis];; (*TAIR) AT2G34970.1 (e_value=1e-15) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=6e-54) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00020334g0009.1 protein NbS00029380g0006.1 protein NbS00029380g0008.1 protein NbS00017463g0011.1 protein NbS00003245g0005.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=3e-30) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017937g0002.1 protein NbS00009438g0002.1 protein NbS00002901g0005.1 protein NbS00020511g0013.1 protein NbS00017780g0004.1 protein NbS00013103g0012.1 protein NbS00013103g0006.1 protein NbS00005034g0015.1 protein NbS00005034g0114.1 protein NbS00005034g0117.1 protein NbS00005034g0107.1 protein NbS00051467g0001.1 protein NbS00051467g0002.1 protein NbS00010043g0003.1 protein NbS00055541g0004.1 protein NbS00055541g0005.1 protein NbS00040601g0007.1 protein ; (*GB) gi|388491480|gb|AFK33806.1| (e_value=2e-14) unknown [Medicago truncatula]; NbS00021450g0003.1 protein NbS00032770g0003.1 protein ; (*GB) gi|357442977|ref|XP_003591766.1| (e_value=2e-28) Calcium homeostasis endoplasmic reticulum protein [Medicago truncatula];; (*TAIR) AT4G31200.1 (e_value=2e-23) | Symbols: | SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | chr4:15162323-15164568 REVERSE LENGTH=650;; (*ITAG) Solyc10g083200.1.1 (e_value=6e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62381721-62385062 transcript_region:SL2.40ch10:62381721..62385062- go_terms:GO:0006396 functional_description:"AtIV20-like protein (Fragment) (AHRD V1 *--- D9YUE4_ARAHA); contains Interpro domain(s) IPR000061 SWAP/Surp "; GO:0006396 NbS00050873g0001.1 protein NbS00050873g0002.1 protein ; (*ITAG) Solyc11g065980.1.1 (e_value=1e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48682132-48685704 transcript_region:SL2.40ch11:48682132..48685704+ functional_description:"U3 small nucleolar ribonucleoprotein protein IMP4 (AHRD V1 ***- D0N3A6_PHYIN); contains Interpro domain(s) IPR007109 Brix domain "; NbS00013192g0004.1 protein ; (*GB) gi|8671846|gb|AAF78409.1|AC009273_15 (e_value=2e-14) Contains similarity to RNA adenosine deaminase gene, exon 15 from Homo sapiens gb|U75503. It contains the adenosine-deaminase (editase) domain PF|02137 [Arabidopsis thaliana];; (*TAIR) AT1G01760.1 (e_value=4e-16) | Symbols: | adenosine deaminases;RNA binding;RNA binding;adenosine deaminases | chr1:276412-278448 REVERSE LENGTH=420;; (*ITAG) Solyc05g048810.2.1 (e_value=4e-17) genomic_reference:SL2.40ch05 gene_region:58644576-58650793 transcript_region:SL2.40ch05:58644576..58650793- go_terms:GO:0008251 functional_description:"tRNA-specific adenosine deaminase (AHRD V1 **** B0WPX1_CULQU); contains Interpro domain(s) IPR002466 Adenosine deaminase/editase "; GO:0008251 NbS00007290g0004.1 protein NbS00050762g0001.1 protein NbS00003344g0003.1 protein NbS00003344g0005.1 protein NbS00018446g0013.1 protein ; (*GB) gi|225451587|ref|XP_002275554.1| (e_value=1e-61) PREDICTED: uncharacterized protein LOC100248121 isoform 1 [Vitis vinifera];; (*TAIR) AT3G26780.1 (e_value=7e-58) | Symbols: | Phosphoglycerate mutase family protein | chr3:9848747-9850277 FORWARD LENGTH=399;; (*ITAG) Solyc02g094480.2.1 (e_value=8e-82) genomic_reference:SL2.40ch02 gene_region:49559379-49564221 transcript_region:SL2.40ch02:49559379..49564221- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KHY5_ARALY); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0004519,GO:0034046 NbS00006993g0003.1 protein ; (*GB) gi|357166294|ref|XP_003580663.1| (e_value=3e-31) PREDICTED: heat shock protein 83-like [Brachypodium distachyon];; (*SWP) sp|P36181|HSP80_SOLLC (e_value=6e-32) Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1;; (*TAIR) AT5G56030.1 (e_value=3e-32) | Symbols: HSP81-2, ERD8, HSP90.2, AtHsp90.2 | heat shock protein 81-2 | chr5:22686923-22689433 FORWARD LENGTH=699;; (*ITAG) Solyc06g036290.2.1 (e_value=1e-34) genomic_reference:SL2.40ch06 gene_region:22492761-22495996 transcript_region:SL2.40ch06:22492761..22495996+ go_terms:GO:0042623,GO:0005524 functional_description:"Heat shock protein 90 (Fragment) (AHRD V1 **-- Q00NU9_WHEAT); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like IPR001404 Heat shock protein Hsp90 "; GO:0042623,GO:0005524 NbS00003489g0104.1 protein NbS00003489g0107.1 protein NbS00029252g0008.1 protein NbS00001139g0008.1 protein NbS00001139g0009.1 protein NbS00045064g0006.1 protein NbS00046576g0002.1 protein NbS00013990g0101.1 protein NbS00014040g0004.1 protein ; (*TAIR) AT2G01210.1 (e_value=1e-12) | Symbols: | Leucine-rich repeat protein kinase family protein | chr2:119509-121734 REVERSE LENGTH=716; NbS00007386g0202.1 protein NbS00020786g0003.1 protein NbS00009910g0009.1 protein NbS00001042g0005.1 protein NbS00001042g0006.1 protein NbC26254939g0002.1 protein NbS00059572g0002.1 protein ; (*GB) gi|2688822|gb|AAB88875.1| (e_value=2e-21) pyrophosphate-dependent phosphofructo-1-kinase [Prunus armeniaca];; (*SWP) sp|Q9C5J7|K6PF7_ARATH (e_value=2e-13) 6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1;; (*TAIR) AT5G56630.1 (e_value=2e-14) | Symbols: PFK7 | phosphofructokinase 7 | chr5:22924311-22926728 FORWARD LENGTH=485;; (*ITAG) Solyc08g066100.2.1 (e_value=5e-22) genomic_reference:SL2.40ch08 gene_region:51736381-51744102 transcript_region:SL2.40ch08:51736381..51744102- go_terms:GO:0006096,GO:0005945 functional_description:"Phosphofructokinase family protein (AHRD V1 ***- D7MLU4_ARALY); contains Interpro domain(s) IPR012004 Pyrophosphate-dependent phosphofructokinase TP0108 "; GO:0006096,GO:0005945 NbS00039417g0012.1 protein NbS00039417g0013.1 protein NbS00039417g0014.1 protein NbS00039417g0016.1 protein NbS00039417g0009.1 protein NbS00043768g0003.1 protein NbS00011305g0005.1 protein NbS00018503g0012.1 protein NbS00018503g0013.1 protein ; (*GB) gi|297735158|emb|CBI17520.3| (e_value=2e-49) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G36630.1 (e_value=2e-42) | Symbols: EMB2754 | Vacuolar sorting protein 39 | chr4:17272088-17276524 REVERSE LENGTH=1000;; (*ITAG) Solyc07g056660.2.1 (e_value=6e-52) genomic_reference:SL2.40ch07 gene_region:61781736-61792185 transcript_region:SL2.40ch07:61781736..61792185+ go_terms:GO:0046332,GO:0005160 functional_description:"Transforming growth factor-beta receptor-associated protein 1 (AHRD V1 *--* TGFA1_HUMAN); contains Interpro domain(s) IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 "; GO:0046332,GO:0005160 NbS00018503g0014.1 protein ; (*GB) gi|224121496|ref|XP_002318597.1| (e_value=1e-38) predicted protein [Populus trichocarpa];; (*SWP) sp|C0LGJ1|Y1743_ARATH (e_value=3e-36) Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1;; (*TAIR) AT1G74360.1 (e_value=2e-37) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:27954299-27957911 FORWARD LENGTH=1106;; (*ITAG) Solyc06g069650.2.1 (e_value=5e-71) genomic_reference:SL2.40ch06 gene_region:39767907-39771642 transcript_region:SL2.40ch06:39767907..39771642- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00018503g0015.1 protein NbS00018503g0010.1 protein NbS00037977g0002.1 protein NbS00030458g0009.1 protein NbS00027451g0003.1 protein NbS00043678g0003.1 protein NbS00026157g0015.1 protein ; (*GB) gi|224059124|ref|XP_002299727.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT1G66590.1 (e_value=4e-40) | Symbols: ATCOX19-1, COX19-1 | cytochrome c oxidase 19-1 | chr1:24841191-24842157 FORWARD LENGTH=98;; (*ITAG) Solyc03g120820.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:63130746-63133754 transcript_region:SL2.40ch03:63130746..63133754- go_terms:GO:0016531 functional_description:"Cytochrome c oxidase assembly protein COX19 (AHRD V1 ***- B6SM12_MAIZE); contains Interpro domain(s) IPR010625 CHCH "; GO:0016531 NbS00061816g0002.1 protein NbS00039676g0013.1 protein NbS00039676g0014.1 protein NbS00039676g0008.1 protein ; (*ITAG) Solyc11g008150.1.1 (e_value=8e-11) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2415664-2426131 transcript_region:SL2.40ch11:2415664..2426131- go_terms:GO:0032968 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-*- B6JZQ2_SCHJY); contains Interpro domain(s) IPR005100 Supt5 repeat "; GO:0032968 NbS00039676g0009.1 protein NbS00043999g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00022646g0004.1 protein NbS00040311g0009.1 protein NbS00021131g0004.1 protein NbS00042659g0003.1 protein NbS00003932g0003.1 protein ; (*ITAG) Solyc10g076170.1.1 (e_value=4e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58305883-58306419 transcript_region:SL2.40ch10:58305883..58306419+ functional_description:"Unknown Protein (AHRD V1)"; NbS00005537g0004.1 protein ; (*GB) gi|6288682|gb|AAF06696.1|AF031487_1 (e_value=2e-30) bZIP transcription factor [Nicotiana tabacum];; (*SWP) sp|O24160|TGA21_TOBAC (e_value=4e-25) TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1;; (*TAIR) AT5G06950.4 (e_value=9e-27) | Symbols: AHBP-1B, TGA2 | bZIP transcription factor family protein | chr5:2152323-2154174 FORWARD LENGTH=330;; (*ITAG) Solyc11g064950.1.1 (e_value=5e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:47346074-47352691 transcript_region:SL2.40ch11:47346074..47352691- go_terms:GO:0003700 functional_description:"BZIP transcription factor (AHRD V1 **** Q9SQK1_TOBAC); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003700 NbS00026580g0001.1 protein NbS00017154g0103.1 protein NbC23738215g0001.1 protein ; (*GB) gi|224075026|ref|XP_002304524.1| (e_value=8e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9P7J5|YJNA_SCHPO (e_value=3e-21) Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC24B10.10c PE=2 SV=1;; (*TAIR) AT5G52882.1 (e_value=6e-42) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21434155-21438362 REVERSE LENGTH=829;; (*ITAG) Solyc08g081740.2.1 (e_value=1e-43) genomic_reference:SL2.40ch08 gene_region:61875719-61881459 transcript_region:SL2.40ch08:61875719..61881459- go_terms:GO:0042623 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--* KTNA1_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00031676g0002.1 protein ; (*GB) gi|357505893|ref|XP_003623235.1| (e_value=2e-52) Receptor kinase-like protein [Medicago truncatula];; (*SWP) sp|Q9SD62|Y3471_ARATH (e_value=1e-27) Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1;; (*TAIR) AT3G47110.1 (e_value=7e-29) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17347103-17350296 REVERSE LENGTH=1025;; (*ITAG) Solyc07g018190.2.1 (e_value=4e-61) genomic_reference:SL2.40ch07 gene_region:9675923-9679700 transcript_region:SL2.40ch07:9675923..9679700- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00043992g0002.1 protein NbS00015983g0002.1 protein NbS00009159g0004.1 protein NbS00035594g0003.1 protein ; (*ITAG) Solyc09g008110.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00001075g0006.1 protein ; (*ITAG) Solyc08g005560.2.1 (e_value=4e-23) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00001075g0205.1 protein NbS00024159g0001.1 protein ; (*ITAG) Solyc11g011360.1.1 (e_value=6e-17) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:4399558-4401854 transcript_region:SL2.40ch11:4399558..4401854- go_terms:GO:0016787 functional_description:"Nudix hydrolase 4 (AHRD V1 **-- B6T5N7_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00003797g0012.1 protein NbS00003797g0013.1 protein NbS00003797g0006.1 protein NbS00003797g0008.1 protein NbS00034600g0008.1 protein NbS00030633g0003.1 protein NbS00030633g0004.1 protein NbS00048573g0003.1 protein NbS00031218g0008.1 protein NbS00031218g0009.1 protein NbC23912298g0001.1 protein ; (*GB) gi|255542060|ref|XP_002512094.1| (e_value=6e-42) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q9C9Q8|PMTT_ARATH (e_value=7e-40) Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2;; (*TAIR) AT2G03480.2 (e_value=3e-41) | Symbols: QUL2 | QUASIMODO2 LIKE 2 | chr2:1051509-1054090 FORWARD LENGTH=595;; (*ITAG) Solyc05g012450.2.1 (e_value=5e-54) genomic_reference:SL2.40ch05 gene_region:5691059-5696583 transcript_region:SL2.40ch05:5691059..5696583- go_terms:GO:0016020 functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00003934g0001.1 protein NbS00029881g0006.1 protein NbS00029881g0007.1 protein NbS00029881g0009.1 protein NbC25629295g0001.1 protein ; (*ITAG) Solyc04g058060.1.1 (e_value=4e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54322327-54325742 transcript_region:SL2.40ch04:54322327..54325742+ go_terms:GO:0005515 functional_description:"30S ribosomal protein S8P (AHRD V1 *-*- RS8_KORCO); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00021420g0004.1 protein NbS00003883g0006.1 protein NbS00003883g0009.1 protein NbS00060959g0001.1 protein NbS00059673g0003.1 protein ; (*GB) gi|297742422|emb|CBI34571.3| (e_value=1e-116) unnamed protein product [Vitis vinifera];; (*SWP) sp|O82486|MTA70_ARATH (e_value=5e-106) N6-adenosine-methyltransferase MT-A70-like OS=Arabidopsis thaliana GN=EMB1706 PE=1 SV=2;; (*TAIR) AT4G10760.1 (e_value=4e-107) | Symbols: EMB1706, MTA | mRNAadenosine methylase | chr4:6619947-6623312 REVERSE LENGTH=685;; (*ITAG) Solyc08g066730.2.1 (e_value=1e-127) genomic_reference:SL2.40ch08 gene_region:52759024-52767013 transcript_region:SL2.40ch08:52759024..52767013+ go_terms:GO:0005515,GO:0016422 functional_description:"Methyltransferase like 3 (AHRD V1 *-** Q28H22_XENTR); contains Interpro domain(s) IPR007757 MT-A70 "; GO:0005515,GO:0016422 NbS00004842g0005.1 protein NbS00021298g0010.1 protein ; (*GB) gi|255569313|ref|XP_002525624.1| (e_value=3e-27) Flavoprotein wrbA, putative [Ricinus communis];; (*TAIR) AT5G58800.2 (e_value=3e-27) | Symbols: | Quinone reductase family protein | chr5:23746032-23746895 REVERSE LENGTH=207;; (*ITAG) Solyc06g076880.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:44165771-44168095 transcript_region:SL2.40ch06:44165771..44168095+ go_terms:GO:0042802 functional_description:"Flavoprotein wrbA (AHRD V1 ***- B6T4R2_MAIZE); contains Interpro domain(s) IPR010089 Flavoprotein WrbA "; GO:0042802 NbS00020802g0213.1 protein NbS00020802g0208.1 protein NbS00038402g0001.1 protein ; (*GB) gi|224089442|ref|XP_002308721.1| (e_value=1e-67) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FVR6|Y1222_ARATH (e_value=6e-22) Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1;; (*TAIR) AT5G10730.1 (e_value=6e-58) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3390822-3392947 REVERSE LENGTH=287;; (*ITAG) Solyc08g006510.2.1 (e_value=1e-76) genomic_reference:SL2.40ch08 gene_region:1108336-1124190 transcript_region:SL2.40ch08:1108336..1124190- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B6TVJ7_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00020409g0005.1 protein ; (*ITAG) Solyc04g079430.2.1 (e_value=4e-15) genomic_reference:SL2.40ch04 gene_region:61525781-61532952 transcript_region:SL2.40ch04:61525781..61532952- go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9I1J7_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00016819g0005.1 protein NbS00022004g0005.1 protein NbS00022004g0008.1 protein NbS00026817g0014.1 protein NbS00001687g0003.1 protein NbS00006789g0003.1 protein NbS00006789g0004.1 protein NbS00006789g0006.1 protein NbS00054309g0004.1 protein ; (*GB) gi|255559484|ref|XP_002520762.1| (e_value=2e-32) hypothetical protein RCOM_0558700 [Ricinus communis];; (*ITAG) Solyc09g065020.2.1 (e_value=2e-42) genomic_reference:SL2.40ch09 gene_region:58368920-58370306 transcript_region:SL2.40ch09:58368920..58370306+ functional_description:"F-box family protein (AHRD V1 ***- B9MYU0_POPTR)"; NbS00011187g0001.1 protein NbS00030356g0007.1 protein NbS00011868g0003.1 protein NbS00011868g0005.1 protein NbS00032733g0001.1 protein NbS00028063g0001.1 protein NbS00018292g0007.1 protein NbS00006179g0003.1 protein NbS00006179g0006.1 protein NbS00010758g0004.1 protein NbS00021003g0006.1 protein NbS00021003g0007.1 protein NbS00021003g0106.1 protein NbS00004451g0002.1 protein NbS00004451g0003.1 protein NbS00002301g0002.1 protein NbS00002301g0003.1 protein NbS00035147g0003.1 protein NbS00022591g0004.1 protein NbS00022591g0008.1 protein NbS00000134g0007.1 protein NbS00000134g0008.1 protein NbS00013947g0005.1 protein NbS00031770g0002.1 protein NbS00001618g0004.1 protein NbS00018189g0006.1 protein NbS00048519g0004.1 protein NbS00002198g0012.1 protein NbS00002198g0010.1 protein NbS00014094g0005.1 protein ; (*ITAG) Solyc02g089100.2.1 (e_value=3e-16) genomic_reference:SL2.40ch02 gene_region:45574034-45577409 transcript_region:SL2.40ch02:45574034..45577409+ functional_description:"C9orf85 homolog (AHRD V1 *-*- C1BVG8_9MAXI); contains Interpro domain(s) IPR019351 Protein of unknown function DUF2039 "; NbS00023743g0007.1 protein NbS00035737g0003.1 protein NbS00001018g0002.1 protein NbS00032935g0001.1 protein NbS00018821g0002.1 protein NbS00005287g0006.1 protein ; (*GB) gi|255537898|ref|XP_002510014.1| (e_value=2e-33) Poly(rC)-binding protein, putative [Ricinus communis];; (*ITAG) Solyc04g077060.2.1 (e_value=2e-65) genomic_reference:SL2.40ch04 gene_region:59615562-59620233 transcript_region:SL2.40ch04:59615562..59620233- go_terms:GO:0003676 functional_description:"KH domain-containing protein (AHRD V1 **-- D7KHT7_ARALY); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00011076g0011.1 protein ; (*GB) gi|255581995|ref|XP_002531795.1| (e_value=3e-26) serine/threonine-protein kinase, putative [Ricinus communis];; (*TAIR) AT1G49180.2 (e_value=1e-14) | Symbols: | protein kinase family protein | chr1:18184814-18187444 REVERSE LENGTH=376;; (*ITAG) Solyc11g005660.1.1 (e_value=5e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:489523-493211 transcript_region:SL2.40ch11:489523..493211- go_terms:GO:0035175 functional_description:"Serine/threonine-protein kinase-like protein (AHRD V1 **** Q9M269_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00011076g0009.1 protein NbS00035814g0002.1 protein NbS00053497g0002.1 protein ; (*GB) gi|296084381|emb|CBI24769.3| (e_value=1e-17) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M1Y3|SKI35_ARATH (e_value=8e-18) F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1;; (*TAIR) AT3G59910.1 (e_value=6e-19) | Symbols: | Ankyrin repeat family protein | chr3:22130779-22133033 REVERSE LENGTH=611;; (*ITAG) Solyc08g015780.2.1 (e_value=9e-20) genomic_reference:SL2.40ch08 gene_region:5497369-5503211 transcript_region:SL2.40ch08:5497369..5503211- functional_description:"F-box/ankyrin repeat protein SKIP35 (AHRD V1 ***- SKI35_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00014302g0003.1 protein NbS00014302g0004.1 protein NbS00050246g0004.1 protein NbS00017962g0004.1 protein NbS00046734g0004.1 protein NbS00018463g0011.1 protein NbS00008692g0007.1 protein NbS00008692g0008.1 protein NbS00006500g0007.1 protein NbS00006500g0008.1 protein NbS00010386g0011.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-12) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00019253g0005.1 protein NbS00019253g0006.1 protein NbS00012564g0011.1 protein ; (*ITAG) Solyc10g076170.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58305883-58306419 transcript_region:SL2.40ch10:58305883..58306419+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012564g0016.1 protein NbS00012564g0005.1 protein NbS00020108g0004.1 protein NbS00024388g0003.1 protein NbS00017151g0004.1 protein NbS00054714g0001.1 protein NbS00005164g0005.1 protein NbS00008571g0005.1 protein NbS00004115g0005.1 protein NbS00004115g0006.1 protein NbS00034565g0004.1 protein ; (*ITAG) Solyc10g017630.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5500412-5502164 transcript_region:SL2.40ch10:5500412..5502164- go_terms:GO:0003700,GO:0046982 functional_description:"MADS-box transcription factor (AHRD V1 **** Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700,GO:0046982 NbS00008241g0002.1 protein NbS00008767g0003.1 protein NbS00008767g0006.1 protein ; (*GB) gi|359486641|ref|XP_002279332.2| (e_value=1e-32) PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial-like [Vitis vinifera];; (*TAIR) AT3G55410.1 (e_value=8e-33) | Symbols: | 2-oxoglutarate dehydrogenase, E1 component | chr3:20541897-20545728 FORWARD LENGTH=1017;; (*ITAG) Solyc04g011350.2.1 (e_value=2e-30) genomic_reference:SL2.40ch04 gene_region:3828961-3837844 transcript_region:SL2.40ch04:3828961..3837844- go_terms:GO:0004591 functional_description:"2-oxoglutarate dehydrogenase E1 component (AHRD V1 **** Q9FLH2_ARATH); contains Interpro domain(s) IPR011603 2-oxoglutarate dehydrogenase, E1 component "; GO:0004591 NbS00019374g0006.1 protein NbC24744037g0001.1 protein ; (*GB) gi|357485613|ref|XP_003613094.1| (e_value=3e-23) Ovarian cancer-associated gene 2 protein-like protein [Medicago truncatula];; (*TAIR) AT4G24380.2 (e_value=3e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171;; (*ITAG) Solyc11g010420.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3485517-3488338 transcript_region:SL2.40ch11:3485517..3488338+ go_terms:GO:0017171 functional_description:"Ovarian cancer-associated gene 2 protein homolog (AHRD V1 **-- B5X7T4_SALSA); contains Interpro domain(s) IPR005645 Protein of unknown function DUF341 "; GO:0017171 NbC23910120g0001.1 protein ; (*GB) gi|359497208|ref|XP_002264945.2| (e_value=1e-25) PREDICTED: translation initiation factor eIF-2B subunit gamma-like [Vitis vinifera];; (*TAIR) AT5G19485.1 (e_value=8e-19) | Symbols: | transferases;nucleotidyltransferases | chr5:6573907-6576352 REVERSE LENGTH=456;; (*ITAG) Solyc11g072090.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52445313-52451140 transcript_region:SL2.40ch11:52445313..52451140+ go_terms:GO:0016740 functional_description:"Translation initiation factor eIF-2B gamma subunit (AHRD V1 ***- B6TJ84_MAIZE); contains Interpro domain(s) IPR011004 Trimeric LpxA-like "; GO:0016740 NbS00003131g0006.1 protein NbS00014011g0003.1 protein NbS00004957g0111.1 protein NbS00060613g0001.1 protein NbS00018875g0007.1 protein NbS00035323g0004.1 protein NbS00002976g0002.1 protein ; (*GB) gi|260177092|gb|ACX33889.1| (e_value=1e-26) flavin monooxygenase-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SVU0|YUC8_ARATH (e_value=2e-22) Flavin-containing monooxygenase YUCCA8 OS=Arabidopsis thaliana GN=YUC8 PE=2 SV=1;; (*TAIR) AT4G28720.1 (e_value=1e-23) | Symbols: YUC8 | Flavin-binding monooxygenase family protein | chr4:14192688-14193968 FORWARD LENGTH=426;; (*ITAG) Solyc09g064160.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:56854505-56856027 transcript_region:SL2.40ch09:56854505..56856027- go_terms:GO:0004499 functional_description:"Flavin monooxygenase-like protein (AHRD V1 **** D2IGV4_SOLLC); contains Interpro domain(s) IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II "; GO:0004499 NbS00053197g0004.1 protein NbS00005359g0014.1 protein NbS00005359g0015.1 protein ; (*GB) gi|224082206|ref|XP_002306602.1| (e_value=7e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LT31|VPS9A_ARATH (e_value=6e-19) Vacuolar protein sorting-associated protein 9A OS=Arabidopsis thaliana GN=VPS9A PE=1 SV=1;; (*TAIR) AT3G19770.1 (e_value=5e-20) | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520;; (*ITAG) Solyc01g096990.2.1 (e_value=5e-24) genomic_reference:SL2.40ch01 gene_region:79733061-79738750 transcript_region:SL2.40ch01:79733061..79738750+ go_terms:GO:0005089 functional_description:"Guanine nucleotide exchange factor Vps9 (AHRD V1 **-* C5JGG6_AJEDS); contains Interpro domain(s) IPR013995 Vacuolar sorting protein 9, subgroup "; GO:0005089 NbS00005359g0016.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-18) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g304030.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00019466g0008.1 protein NbS00019466g0009.1 protein NbS00020452g0005.1 protein NbS00020452g0006.1 protein NbS00020452g0007.1 protein NbS00020452g0008.1 protein ; (*GB) gi|359484301|ref|XP_002281247.2| (e_value=5e-17) PREDICTED: eukaryotic initiation factor 4A-15-like [Vitis vinifera];; (*ITAG) Solyc07g040790.2.1 (e_value=8e-33) genomic_reference:SL2.40ch07 gene_region:47050369-47067990 transcript_region:SL2.40ch07:47050369..47067990- go_terms:GO:0005515,GO:0000166 functional_description:"WD-repeat protein (AHRD V1 *--- B0C6X5_ACAM1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00039263g0002.1 protein NbS00016094g0006.1 protein NbS00038180g0013.1 protein NbS00038180g0010.1 protein NbC25988716g0001.1 protein NbC25988716g0002.1 protein ; (*GB) gi|147828441|emb|CAN68757.1| (e_value=1e-23) hypothetical protein VITISV_035534 [Vitis vinifera];; (*SWP) sp|Q9SNC6|PUB13_ARATH (e_value=2e-16) U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1;; (*TAIR) AT3G46510.1 (e_value=1e-17) | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17124106-17126539 REVERSE LENGTH=660;; (*ITAG) Solyc11g066040.1.1 (e_value=5e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48796501-48803987 transcript_region:SL2.40ch11:48796501..48803987+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00030880g0003.1 protein ; (*ITAG) Solyc09g014490.2.1 (e_value=2e-36) genomic_reference:SL2.40ch09 gene_region:6111216-6115608 transcript_region:SL2.40ch09:6111216..6115608- functional_description:"En/Spm-like transposon protein (AHRD V1 *--- O04210_ARATH)"; NbS00053382g0001.1 protein NbS00053382g0002.1 protein NbS00028315g0015.1 protein ; (*GB) gi|223975779|gb|ACN32077.1| (e_value=1e-19) unknown [Zea mays]; NbS00028315g0019.1 protein NbS00028315g0010.1 protein NbS00032695g0002.1 protein NbS00039632g0004.1 protein NbS00032404g0009.1 protein ; (*GB) gi|297738741|emb|CBI27986.3| (e_value=6e-48) unnamed protein product [Vitis vinifera];; (*SWP) sp|B8HSK8|SYR_CYAP4 (e_value=1e-31) Arginine--tRNA ligase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=argS PE=3 SV=1;; (*TAIR) AT4G26300.1 (e_value=1e-42) | Symbols: emb1027 | Arginyl-tRNA synthetase, class Ic | chr4:13308400-13313109 REVERSE LENGTH=642;; (*ITAG) Solyc12g008570.1.1 (e_value=8e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1956456-1966721 transcript_region:SL2.40ch12:1956456..1966721+ go_terms:GO:0006420,GO:0005737 functional_description:"Arginyl-tRNA synthetase (AHRD V1 ***- O23247_ARATH); contains Interpro domain(s) IPR001278 Arginyl-tRNA synthetase, class Ic "; GO:0006420,GO:0005737 NbS00009743g0005.1 protein NbS00026969g0004.1 protein NbS00009680g0002.1 protein ; (*GB) gi|54606707|dbj|BAD66730.1| (e_value=2e-15) orf141 [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc04g045260.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:31171275-31174232 transcript_region:SL2.40ch04:31171275..31174232+ functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00009680g0003.1 protein NbS00012005g0004.1 protein NbS00009085g0006.1 protein ; (*ITAG) Solyc07g062990.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:62827498-62829378 transcript_region:SL2.40ch07:62827498..62829378- functional_description:"Unknown Protein (AHRD V1)"; NbS00009085g0010.1 protein ; (*ITAG) Solyc04g008300.1.1 (e_value=8e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1981218-1982819 transcript_region:SL2.40ch04:1981218..1982819+ go_terms:GO:0004672,GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 **-* ADCK1_MOUSE); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0004672,GO:0016709 NbS00024875g0004.1 protein NbS00003769g0004.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=8e-24) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum];; (*ITAG) Solyc10g054410.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:50749443-50750094 transcript_region:SL2.40ch10:50749443..50750094- functional_description:"Unknown Protein (AHRD V1)"; NbS00007054g0003.1 protein ; (*GB) gi|57013968|ref|YP_173440.1| (e_value=3e-18) hypothetical protein NitaMp102 [Nicotiana tabacum]; NbS00007054g0005.1 protein NbS00046931g0001.1 protein NbS00001809g0001.1 protein ; (*GB) gi|326489346|dbj|BAK01656.1| (e_value=6e-19) predicted protein [Hordeum vulgare subsp. vulgare];; (*SWP) sp|P42027|NDUS7_BRAOL (e_value=1e-19) NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Brassica oleracea PE=2 SV=1;; (*TAIR) AT5G11770.1 (e_value=1e-20) | Symbols: | NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial | chr5:3791148-3792929 REVERSE LENGTH=218;; (*ITAG) Solyc11g070030.1.1 (e_value=1e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51675388-51680980 transcript_region:SL2.40ch11:51675388..51680980+ go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit B (AHRD V1 ***- D3SFJ4_THISK); contains Interpro domain(s) IPR006138 NADH:ubiquinone oxidoreductase, 20 kDa subunit "; GO:0055114 NbS00001809g0110.1 protein NbS00025847g0006.1 protein ; (*GB) gi|296084338|emb|CBI24726.3| (e_value=4e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G43850.1 (e_value=3e-20) | Symbols: | Integrin-linked protein kinase family | chr2:18159517-18161984 REVERSE LENGTH=479;; (*ITAG) Solyc12g019410.1.1 (e_value=9e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00020718g0005.1 protein NbS00017020g0001.1 protein NbS00057116g0001.1 protein NbS00009145g0001.1 protein NbS00032879g0005.1 protein NbS00032879g0010.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-26) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=2e-12) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626;; (*ITAG) Solyc07g037900.1.1 (e_value=3e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:41420885-41422318 transcript_region:SL2.40ch07:41420885..41422318+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *-*- A2Q500_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00014180g0202.1 protein NbS00017797g0002.1 protein NbS00017797g0003.1 protein NbS00017797g0004.1 protein ; (*GB) gi|113205246|gb|AAT39963.2| (e_value=3e-12) Polyprotein, putative [Solanum demissum]; NbS00033508g0006.1 protein NbS00005277g0005.1 protein NbS00019209g0005.1 protein NbS00004012g0002.1 protein NbS00026111g0002.1 protein ; (*ITAG) Solyc03g063790.1.1 (e_value=2e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:33526476-33526877 transcript_region:SL2.40ch03:33526476..33526877- functional_description:"Unknown Protein (AHRD V1)"; NbS00022436g0004.1 protein NbS00022744g0002.1 protein NbS00040760g0007.1 protein NbS00057990g0001.1 protein NbS00000002g0006.1 protein NbS00036376g0002.1 protein NbS00036376g0003.1 protein NbS00036376g0004.1 protein NbS00036376g0005.1 protein NbS00030243g0004.1 protein NbS00057007g0001.1 protein NbS00029765g0010.1 protein NbS00022749g0003.1 protein NbS00016195g0003.1 protein NbS00055611g0003.1 protein NbS00051935g0014.1 protein NbS00052219g0006.1 protein NbS00007753g0001.1 protein NbC25318866g0001.1 protein ; (*ITAG) Solyc11g008800.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2978131-2987532 transcript_region:SL2.40ch11:2978131..2987532- go_terms:GO:0004437 functional_description:"Inositol 1 4 5-trisphosphate 5-phosphatase-like protein (AHRD V1 *-*- Q6H453_ORYSJ); contains Interpro domain(s) IPR000300 Inositol polyphosphate related phosphatase "; GO:0004437 NbS00025465g0005.1 protein NbS00025465g0210.1 protein NbS00030589g0005.1 protein NbS00015740g0003.1 protein NbS00003063g0006.1 protein NbS00027837g0004.1 protein ; (*GB) gi|225430698|ref|XP_002264115.1| (e_value=3e-15) PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Vitis vinifera];; (*SWP) sp|Q9FJZ3|MAN7_ARATH (e_value=7e-16) Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=5e-17) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc02g084990.2.1 (e_value=3e-17) genomic_reference:SL2.40ch02 gene_region:42596683-42600186 transcript_region:SL2.40ch02:42596683..42600186- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00003381g0005.1 protein NbS00048347g0004.1 protein NbS00039966g0002.1 protein ; (*GB) gi|30407706|gb|AAP30039.1| (e_value=5e-32) aconitase [Solanum pennellii];; (*SWP) sp|Q42560|ACO1_ARATH (e_value=2e-31) Aconitate hydratase 1 OS=Arabidopsis thaliana GN=ACO1 PE=1 SV=2;; (*TAIR) AT4G35830.1 (e_value=1e-32) | Symbols: ACO1 | aconitase 1 | chr4:16973007-16977949 REVERSE LENGTH=898;; (*ITAG) Solyc07g052350.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:58180514-58188952 transcript_region:SL2.40ch07:58180514..58188952+ go_terms:GO:0005507 functional_description:"3-isopropylmalate dehydratase large subunit (AHRD V1 *--- LEUC_NATPD); contains Interpro domain(s) IPR006249 Aconitase/iron regulatory protein 2 "; GO:0005507 NbS00017186g0004.1 protein ; (*ITAG) Solyc01g106750.1.1 (e_value=9e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86252686-86255230 transcript_region:SL2.40ch01:86252686..86255230+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020230g0006.1 protein NbS00020230g0008.1 protein NbS00025441g0002.1 protein NbS00025441g0105.1 protein NbS00002313g0015.1 protein NbS00002313g0016.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=4e-27) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum];; (*ITAG) Solyc10g054410.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:50749443-50750094 transcript_region:SL2.40ch10:50749443..50750094- functional_description:"Unknown Protein (AHRD V1)"; NbS00022166g0004.1 protein NbS00022166g0007.1 protein NbS00061841g0002.1 protein NbS00054897g0002.1 protein ; (*GB) gi|359488141|ref|XP_002266168.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100266816 [Vitis vinifera];; (*SWP) sp|Q42572|DNLI1_ARATH (e_value=3e-80) DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2;; (*TAIR) AT1G66730.1 (e_value=7e-169) | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396;; (*ITAG) Solyc02g091120.2.1 (e_value=3e-116) genomic_reference:SL2.40ch02 gene_region:47101422-47120748 transcript_region:SL2.40ch02:47101422..47120748- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9SPY8_RICCO); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00024891g0005.1 protein NbS00024891g0006.1 protein NbS00004608g0007.1 protein NbS00044751g0013.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=4e-21) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00033469g0004.1 protein NbS00028005g0004.1 protein NbS00041060g0002.1 protein NbS00014547g0103.1 protein NbS00037418g0004.1 protein NbS00006425g0003.1 protein NbS00037575g0006.1 protein NbS00016684g0001.1 protein NbS00051495g0001.1 protein ; (*GB) gi|224106812|ref|XP_002314293.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39690.1 (e_value=3e-17) | Symbols: | Protein of unknown function, DUF547 | chr2:16541165-16543267 FORWARD LENGTH=498;; (*ITAG) Solyc11g069840.1.1 (e_value=9e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51553588-51559860 transcript_region:SL2.40ch11:51553588..51559860+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00013596g0005.1 protein NbS00001639g0007.1 protein NbS00042135g0002.1 protein NbS00031402g0006.1 protein NbS00029900g0007.1 protein NbS00015168g0003.1 protein NbS00004964g0006.1 protein NbS00004964g0007.1 protein NbS00027829g0006.1 protein NbS00037456g0002.1 protein NbS00010803g0006.1 protein NbS00018399g0018.1 protein NbS00018399g0009.1 protein NbS00035520g0012.1 protein NbS00035520g0010.1 protein ; (*GB) gi|147773498|emb|CAN60263.1| (e_value=1e-12) hypothetical protein VITISV_026496 [Vitis vinifera]; NbS00004501g0003.1 protein NbS00060508g0003.1 protein NbS00043925g0012.1 protein NbS00004897g0005.1 protein NbS00026519g0001.1 protein NbS00005148g0004.1 protein NbC23917607g0001.1 protein ; (*GB) gi|224143816|ref|XP_002325084.1| (e_value=1e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SNC3|FLA4_ARATH (e_value=8e-32) Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1;; (*TAIR) AT3G46550.1 (e_value=6e-33) | Symbols: SOS5 | Fasciclin-like arabinogalactan family protein | chr3:17136612-17137874 REVERSE LENGTH=420;; (*ITAG) Solyc03g112880.1.1 (e_value=5e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:57222149-57223432 transcript_region:SL2.40ch03:57222149..57223432- go_terms:GO:0005515,GO:0030247 functional_description:"Fasciclin-like arabinogalactan protein 9 (AHRD V1 ***- A9XTL4_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; GO:0005515,GO:0030247 NbS00023819g0003.1 protein NbS00000001g0008.1 protein ; (*GB) gi|224062023|ref|XP_002300716.1| (e_value=2e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q43870|APS2_ARATH (e_value=4e-33) ATP sulfurylase 2 OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1;; (*TAIR) AT1G19920.1 (e_value=3e-34) | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr1:6914835-6916657 REVERSE LENGTH=476;; (*ITAG) Solyc03g005260.2.1 (e_value=4e-30) genomic_reference:SL2.40ch03 gene_region:148411-153101 transcript_region:SL2.40ch03:148411..153101- go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00022093g0002.1 protein NbS00004831g0005.1 protein NbS00040384g0001.1 protein ; (*TAIR) AT2G38020.2 (e_value=8e-14) | Symbols: VCL1, MAN, EMB258 | vacuoleless1 (VCL1) | chr2:15910272-15914190 REVERSE LENGTH=834;; (*ITAG) Solyc07g056220.2.1 (e_value=1e-16) genomic_reference:SL2.40ch07 gene_region:61387158-61398184 transcript_region:SL2.40ch07:61387158..61398184- go_terms:GO:0051015 functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NFB5_AJECG); contains Interpro domain(s) IPR016534 Vacuolar protein sorting-associated protein 16 "; GO:0051015 NbS00048369g0001.1 protein ; (*ITAG) Solyc00g164580.1.1 (e_value=1e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17840292-17841447 transcript_region:SL2.40ch00:17840292..17841447+ functional_description:"Unknown Protein (AHRD V1)"; NbS00002234g0005.1 protein ; (*ITAG) Solyc09g009340.1.1 (e_value=6e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:2709542-2720711 transcript_region:SL2.40ch09:2709542..2720711- go_terms:GO:0000014 functional_description:"DNA double-strand break repair protein mre11 (AHRD V1 *--* MRE11_METTH); contains Interpro domain(s) IPR003701 DNA repair exonuclease "; GO:0000014 NbS00040837g0001.1 protein NbS00033704g0003.1 protein NbS00033704g0004.1 protein NbS00033704g0005.1 protein NbS00008997g0008.1 protein NbS00006532g0003.1 protein NbS00019599g0002.1 protein NbS00059950g0004.1 protein NbS00030536g0002.1 protein NbS00045066g0002.1 protein NbS00013254g0006.1 protein NbS00025325g0002.1 protein NbS00014510g0006.1 protein NbS00020076g0001.1 protein NbS00031195g0003.1 protein NbS00014300g0003.1 protein NbS00022937g0007.1 protein NbS00010136g0002.1 protein NbS00031493g0008.1 protein NbC25012918g0001.1 protein ; (*GB) gi|3425907|emb|CAA05898.1| (e_value=4e-27) transcription factor VSF-1 [Solanum lycopersicum];; (*ITAG) Solyc04g081190.2.1 (e_value=7e-30) genomic_reference:SL2.40ch04 gene_region:62784623-62788098 transcript_region:SL2.40ch04:62784623..62788098+ go_terms:GO:0003677 functional_description:"BZIP transcription factor family protein expressed (AHRD V1 ***- Q8LN44_ORYSJ); contains Interpro domain(s) IPR011616 bZIP transcription factor, bZIP-1 "; GO:0003677 NbS00006271g0005.1 protein NbS00016565g0010.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00033277g0009.1 protein NbS00015697g0001.1 protein ; (*GB) gi|147819143|emb|CAN78080.1| (e_value=3e-27) hypothetical protein VITISV_021299 [Vitis vinifera];; (*SWP) sp|Q9SK08|LBD11_ARATH (e_value=8e-28) LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2;; (*TAIR) AT2G28500.1 (e_value=6e-29) | Symbols: LBD11 | LOB domain-containing protein 11 | chr2:12186603-12188110 REVERSE LENGTH=232;; (*ITAG) Solyc05g048740.2.1 (e_value=6e-30) genomic_reference:SL2.40ch05 gene_region:58452352-58453745 transcript_region:SL2.40ch05:58452352..58453745+ go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00033058g0007.1 protein NbS00051169g0003.1 protein NbS00061051g0003.1 protein NbS00032833g0003.1 protein NbC24467427g0002.1 protein ; (*ITAG) Solyc03g020020.2.1 (e_value=2e-31) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbC25716275g0002.1 protein ; (*GB) gi|297737770|emb|CBI26971.3| (e_value=1e-49) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G15060.1 (e_value=2e-45) | Symbols: | Uncharacterised conserved protein UCP031088, alpha/beta hydrolase | chr1:5184053-5186856 REVERSE LENGTH=578;; (*ITAG) Solyc04g007450.2.1 (e_value=2e-55) genomic_reference:SL2.40ch04 gene_region:1113432-1119419 transcript_region:SL2.40ch04:1113432..1119419- go_terms:GO:0006508 functional_description:"Alpha/beta hydrolase fold protein (AHRD V1 *--- B8JCK0_ANAD2); contains Interpro domain(s) IPR016969 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase, At1g15070 "; GO:0006508 NbS00037995g0005.1 protein NbS00000270g0003.1 protein NbS00051521g0004.1 protein NbS00010356g0005.1 protein NbS00003851g0012.1 protein NbS00003851g0006.1 protein NbS00003851g0008.1 protein NbS00003851g0009.1 protein NbS00006371g0001.1 protein NbS00036764g0001.1 protein NbS00044510g0001.1 protein ; (*GB) gi|255546785|ref|XP_002514451.1| (e_value=2e-55) ATP-dependent RNA helicase, putative [Ricinus communis];; (*TAIR) AT5G04895.1 (e_value=2e-50) | Symbols: | DEA(D/H)-box RNA helicase family protein | chr5:1428796-1434516 FORWARD LENGTH=1161;; (*ITAG) Solyc01g006710.2.1 (e_value=1e-57) genomic_reference:SL2.40ch01 gene_region:1286242-1300706 transcript_region:SL2.40ch01:1286242..1300706+ go_terms:GO:0042802 functional_description:"ATP-dependent RNA helicase A-like protein (AHRD V1 ***- Q9FF84_ARATH); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0042802 NbS00000671g0025.1 protein NbS00013332g0004.1 protein NbS00013332g0106.1 protein NbS00045473g0001.1 protein NbS00005695g0001.1 protein ; (*GB) gi|37983647|gb|AAR06293.1| (e_value=5e-55) adenylosuccinate lyase [Nicotiana tabacum];; (*SWP) sp|Q9I0K9|PUR8_PSEAE (e_value=2e-46) Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1;; (*TAIR) AT1G36280.1 (e_value=5e-45) | Symbols: | L-Aspartase-like family protein | chr1:13640600-13642908 FORWARD LENGTH=527;; (*ITAG) Solyc07g006530.2.1 (e_value=4e-57) genomic_reference:SL2.40ch07 gene_region:1326181-1332288 transcript_region:SL2.40ch07:1326181..1332288+ go_terms:GO:0005515 functional_description:"Adenylosuccinate lyase (AHRD V1 ***- Q6T7E9_TOBAC); contains Interpro domain(s) IPR004769 Adenylosuccinate lyase "; GO:0005515 NbS00005016g0002.1 protein NbS00000589g0002.1 protein NbS00000589g0003.1 protein NbS00016572g0003.1 protein NbS00016572g0004.1 protein NbS00038046g0003.1 protein NbS00009494g0004.1 protein NbS00019157g0016.1 protein NbS00019157g0022.1 protein NbS00054836g0003.1 protein NbS00044156g0003.1 protein NbS00044156g0004.1 protein NbS00044156g0005.1 protein NbS00046673g0002.1 protein NbS00006009g0007.1 protein NbS00043153g0003.1 protein NbS00017133g0002.1 protein NbS00017617g0014.1 protein NbS00030020g0002.1 protein NbS00025464g0008.1 protein NbS00017718g0012.1 protein NbS00017718g0014.1 protein ; (*TAIR) AT1G33140.1 (e_value=9e-15) | Symbols: PGY2 | Ribosomal protein L6 family | chr1:12023360-12024502 FORWARD LENGTH=194;; (*ITAG) Solyc12g096700.1.1 (e_value=2e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63855944-63857858 transcript_region:SL2.40ch12:63855944..63857858- go_terms:GO:0005840 functional_description:"Ribosomal L9-like protein (AHRD V1 ***- B3TLR1_ELAGV); contains Interpro domain(s) IPR002359 Ribosomal protein L6, conserved site-2 "; GO:0005840 NbS00047529g0003.1 protein NbS00034235g0003.1 protein NbS00031021g0001.1 protein NbS00003446g0001.1 protein NbS00016856g0007.1 protein NbS00016856g0008.1 protein NbS00028407g0007.1 protein NbS00049396g0002.1 protein NbS00012430g0111.1 protein NbS00012430g0112.1 protein NbS00012430g0116.1 protein NbS00007310g0012.1 protein NbS00057148g0003.1 protein NbS00057148g0004.1 protein NbS00007114g0004.1 protein NbS00007114g0005.1 protein NbS00048062g0009.1 protein NbS00010422g0001.1 protein NbS00004303g0005.1 protein NbS00026357g0009.1 protein NbS00039131g0002.1 protein NbS00005208g0004.1 protein NbS00005208g0007.1 protein NbS00006839g0001.1 protein NbS00007640g0005.1 protein NbS00007640g0104.1 protein NbS00051098g0005.1 protein ; (*GB) gi|225426148|ref|XP_002278358.1| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100241601 [Vitis vinifera];; (*TAIR) AT5G41560.1 (e_value=1e-13) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:16621427-16622619 REVERSE LENGTH=101;; (*ITAG) Solyc08g008120.2.1 (e_value=1e-21) genomic_reference:SL2.40ch08 gene_region:2587918-2593071 transcript_region:SL2.40ch08:2587918..2593071- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; NbS00006519g0004.1 protein ; (*ITAG) Solyc03g078630.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:44796138-44797376 transcript_region:SL2.40ch03:44796138..44797376+ go_terms:GO:0043008 functional_description:"Ubiquitin (AHRD V1 ***- Q00IB5_RANNI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0043008 NbS00006519g0007.1 protein NbS00015994g0006.1 protein NbS00027967g0001.1 protein ; (*ITAG) Solyc02g080850.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:39542836-39544104 transcript_region:SL2.40ch02:39542836..39544104+ functional_description:"F-box-like (AHRD V1 ***- Q6H6K1_ORYSJ)"; NbS00021149g0005.1 protein NbS00021149g0007.1 protein NbS00015944g0005.1 protein ; (*ITAG) Solyc03g071730.1.1 (e_value=5e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41448300-41448871 transcript_region:SL2.40ch03:41448300..41448871- functional_description:"Unknown Protein (AHRD V1)"; NbS00015944g0007.1 protein NbS00015944g0110.1 protein NbS00044649g0003.1 protein NbS00017162g0017.1 protein NbS00022287g0003.1 protein ; (*GB) gi|356505250|ref|XP_003521405.1| (e_value=6e-21) PREDICTED: uncharacterized protein LOC100792662 [Glycine max];; (*TAIR) AT5G60800.2 (e_value=8e-17) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:24460822-24462464 REVERSE LENGTH=302;; (*ITAG) Solyc11g069070.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50742549-50744955 transcript_region:SL2.40ch11:50742549..50744955+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 *-*- B6U064_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00022287g0005.1 protein NbS00026055g0003.1 protein ; (*GB) gi|359807373|ref|NP_001241638.1| (e_value=8e-62) uncharacterized protein LOC100796927 [Glycine max]; NbS00045437g0003.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=5e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00045437g0005.1 protein ; (*GB) gi|255561286|ref|XP_002521654.1| (e_value=1e-78) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G27090.1 (e_value=2e-63) | Symbols: | Protein of unknown function (DUF630 and DUF632) | chr2:11567691-11570345 REVERSE LENGTH=743;; (*ITAG) Solyc09g007100.2.1 (e_value=1e-119) genomic_reference:SL2.40ch09 gene_region:743380-748421 transcript_region:SL2.40ch09:743380..748421+ functional_description:"BZIP transcription factor (AHRD V1 *-*- D3YBE4_TRIRP); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00000679g0007.1 protein NbS00007349g0002.1 protein NbS00007349g0111.1 protein NbS00007349g0116.1 protein NbS00007349g0109.1 protein NbS00058583g0002.1 protein NbS00022544g0002.1 protein ; (*GB) gi|110739414|dbj|BAF01617.1| (e_value=4e-15) hypothetical protein [Arabidopsis thaliana]; NbS00002776g0005.1 protein NbS00015922g0007.1 protein NbS00008493g0007.1 protein NbS00004513g0009.1 protein NbS00004513g0010.1 protein NbS00002003g0003.1 protein NbS00006987g0004.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-11) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00014902g0003.1 protein ; (*GB) gi|255571576|ref|XP_002526734.1| (e_value=2e-19) DNA-directed RNA polymerase I largest subunit, putative [Ricinus communis];; (*TAIR) AT3G57660.1 (e_value=3e-17) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00001668g0003.1 protein NbS00001668g0005.1 protein NbS00001668g0006.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=1e-37) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=2e-30) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=2e-31) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00001668g0007.1 protein NbS00037625g0006.1 protein NbS00007827g0007.1 protein NbS00001499g0005.1 protein NbS00001499g0008.1 protein NbS00001499g0009.1 protein NbS00022107g0002.1 protein NbS00018837g0005.1 protein ; (*TAIR) AT4G34100.1 (e_value=5e-15) | Symbols: | RING/U-box superfamily protein | chr4:16330590-16334864 FORWARD LENGTH=1108;; (*ITAG) Solyc01g107880.2.1 (e_value=8e-16) genomic_reference:SL2.40ch01 gene_region:87028628-87035724 transcript_region:SL2.40ch01:87028628..87035724- go_terms:GO:0005515 functional_description:"Membrane-associated ring finger 6 (AHRD V1 *--- B3VKM1_PIG); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00034272g0003.1 protein NbS00012958g0006.1 protein NbS00023793g0004.1 protein NbS00041621g0006.1 protein NbS00041621g0007.1 protein NbS00007582g0012.1 protein ; (*GB) gi|225427155|ref|XP_002277531.1| (e_value=3e-24) PREDICTED: (R)-mandelonitrile lyase-like [Vitis vinifera];; (*SWP) sp|Q9SSM2|MDLL_ARATH (e_value=8e-21) (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1;; (*TAIR) AT1G73050.1 (e_value=6e-22) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc03g123820.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00007582g0016.1 protein NbS00007582g0008.1 protein NbS00009048g0001.1 protein NbS00009048g0002.1 protein NbS00025836g0004.1 protein NbS00004591g0001.1 protein NbS00002470g0005.1 protein NbS00002470g0007.1 protein NbS00042906g0001.1 protein ; (*GB) gi|226496323|ref|NP_001151956.1| (e_value=2e-26) 6-phosphogluconolactonase [Zea mays];; (*SWP) sp|Q6Z9C3|6PGL3_ORYSJ (e_value=1e-25) Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0547100 PE=2 SV=1;; (*TAIR) AT5G24400.1 (e_value=2e-25) | Symbols: EMB2024, PGL3 | NagB/RpiA/CoA transferase-like superfamily protein | chr5:8330532-8331784 REVERSE LENGTH=325;; (*ITAG) Solyc06g053200.2.1 (e_value=9e-40) genomic_reference:SL2.40ch06 gene_region:32435446-32437176 transcript_region:SL2.40ch06:32435446..32437176- go_terms:GO:0017057 functional_description:"6-phosphogluconolactonase (AHRD V1 **** B6UAK0_MAIZE); contains Interpro domain(s) IPR005900 6-phosphogluconolactonase "; GO:0017057 NbS00051403g0002.1 protein NbS00016727g0008.1 protein ; (*ITAG) Solyc02g032970.2.1 (e_value=5e-16) genomic_reference:SL2.40ch02 gene_region:20270714-20283703 transcript_region:SL2.40ch02:20270714..20283703+ go_terms:GO:0006508,GO:0005622 functional_description:"Cell division protease FtsH (AHRD V1 ***- D8HK14_AMYMU); contains Interpro domain(s) IPR000642 Peptidase M41 "; GO:0006508,GO:0005622 NbS00008446g0008.1 protein NbS00061400g0001.1 protein NbS00005766g0003.1 protein ; (*GB) gi|224059434|ref|XP_002299845.1| (e_value=5e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT5G59210.2 (e_value=3e-35) | Symbols: | myosin heavy chain-related | chr5:23890802-23893619 REVERSE LENGTH=433;; (*ITAG) Solyc09g055760.2.1 (e_value=1e-43) genomic_reference:SL2.40ch09 gene_region:40014103-40026447 transcript_region:SL2.40ch09:40014103..40026447- functional_description:"T-snare (AHRD V1 ***- Q2HS23_MEDTR)"; NbS00005766g0007.1 protein NbS00006157g0004.1 protein NbS00006157g0005.1 protein NbS00006157g0006.1 protein NbS00009834g0001.1 protein NbS00035721g0011.1 protein NbS00035721g0012.1 protein NbS00018997g0004.1 protein NbC25306105g0002.1 protein NbS00013430g0003.1 protein NbS00013430g0006.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=3e-37) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00043930g0005.1 protein ; (*ITAG) Solyc01g096900.2.1 (e_value=3e-13) genomic_reference:SL2.40ch01 gene_region:79648895-79670117 transcript_region:SL2.40ch01:79648895..79670117+ go_terms:GO:0005694 functional_description:"DNA gyrase subunit A family protein (AHRD V1 ***- D7L923_ARALY); contains Interpro domain(s) IPR005743 DNA gyrase, subunit A "; GO:0005694 NbS00043930g0006.1 protein NbS00060624g0001.1 protein NbS00038721g0002.1 protein NbS00038721g0003.1 protein ; (*GB) gi|225455594|ref|XP_002269354.1| (e_value=7e-47) PREDICTED: K(+) efflux antiporter 5 [Vitis vinifera];; (*SWP) sp|Q8VYR9|KEA5_ARATH (e_value=2e-44) K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1;; (*TAIR) AT5G51710.1 (e_value=2e-45) | Symbols: KEA5, ATKEA5 | K+ efflux antiporter 5 | chr5:21004566-21008580 REVERSE LENGTH=568;; (*ITAG) Solyc03g007040.2.1 (e_value=3e-53) genomic_reference:SL2.40ch03 gene_region:1576117-1584265 transcript_region:SL2.40ch03:1576117..1584265+ go_terms:GO:0015503,GO:0015386 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 **** Q8PYD0_METMA); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015503,GO:0015386 NbS00059040g0003.1 protein ; (*GB) gi|356539893|ref|XP_003538427.1| (e_value=5e-24) PREDICTED: probable methyltransferase PMT11-like [Glycine max];; (*SWP) sp|O22285|PMTB_ARATH (e_value=3e-25) Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1;; (*TAIR) AT2G39750.1 (e_value=2e-26) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr2:16578986-16582281 REVERSE LENGTH=694;; (*ITAG) Solyc05g052970.2.1 (e_value=1e-26) genomic_reference:SL2.40ch05 gene_region:62285580-62291311 transcript_region:SL2.40ch05:62285580..62291311+ functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00006970g0008.1 protein NbS00006970g0009.1 protein NbS00011613g0006.1 protein NbS00058634g0001.1 protein NbS00013631g0106.1 protein NbS00013631g0109.1 protein NbS00048908g0002.1 protein NbS00024970g0001.1 protein NbS00024970g0002.1 protein NbS00052139g0002.1 protein ; (*GB) gi|224118020|ref|XP_002317713.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18360.1 (e_value=5e-15) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:6316996-6319204 REVERSE LENGTH=382;; (*ITAG) Solyc03g098020.2.1 (e_value=4e-34) genomic_reference:SL2.40ch03 gene_region:53815621-53822753 transcript_region:SL2.40ch03:53815621..53822753+ go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00005550g0006.1 protein NbS00009018g0003.1 protein NbS00031506g0003.1 protein NbS00031506g0004.1 protein NbS00020036g0005.1 protein NbC24060511g0001.1 protein ; (*GB) gi|224109478|ref|XP_002315209.1| (e_value=2e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=2e-48) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=1e-49) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc02g076720.2.1 (e_value=8e-61) genomic_reference:SL2.40ch02 gene_region:36422621-36428170 transcript_region:SL2.40ch02:36422621..36428170- go_terms:GO:0004642 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 **** A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0004642 NbS00027187g0003.1 protein NbS00001352g0002.1 protein NbS00024384g0003.1 protein NbS00037326g0003.1 protein NbS00007967g0001.1 protein ; (*GB) gi|225428088|ref|XP_002280324.1| (e_value=8e-15) PREDICTED: sorcin [Vitis vinifera];; (*ITAG) Solyc01g112170.2.1 (e_value=8e-20) genomic_reference:SL2.40ch01 gene_region:89998308-90002839 transcript_region:SL2.40ch01:89998308..90002839- go_terms:GO:0005509 functional_description:"Calcium-dependent protein kinase (AHRD V1 **-* Q9S7Z4_MARPO); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00008865g0006.1 protein NbS00011086g0006.1 protein NbS00011086g0111.1 protein NbS00011086g0118.1 protein NbS00011086g0108.1 protein NbS00011086g0110.1 protein NbS00015083g0005.1 protein NbS00003517g0001.1 protein ; (*GB) gi|54290405|dbj|BAD61275.1| (e_value=3e-61) protein kinase family protein-like [Oryza sativa Japonica Group];; (*TAIR) AT1G22870.1 (e_value=2e-52) | Symbols: | Protein kinase family protein with ARM repeat domain | chr1:8089501-8094173 FORWARD LENGTH=913;; (*ITAG) Solyc11g042990.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00016310g0005.1 protein NbS00039666g0001.1 protein NbS00003697g0005.1 protein NbS00003697g0006.1 protein NbS00006467g0004.1 protein NbS00006467g0110.1 protein NbS00012255g0006.1 protein NbS00012255g0007.1 protein NbS00036419g0003.1 protein NbS00009444g0013.1 protein NbS00009612g0002.1 protein NbS00009682g0008.1 protein NbS00009682g0009.1 protein NbS00009682g0010.1 protein NbS00049457g0003.1 protein NbS00049457g0004.1 protein NbS00000802g0007.1 protein NbS00000802g0008.1 protein ; (*GB) gi|224127051|ref|XP_002329373.1| (e_value=4e-45) predicted protein [Populus trichocarpa];; (*TAIR) AT2G20725.1 (e_value=4e-30) | Symbols: | CAAX amino terminal protease family protein | chr2:8934113-8935426 REVERSE LENGTH=301; NbS00054280g0001.1 protein NbS00029407g0004.1 protein NbS00031539g0003.1 protein NbS00009185g0001.1 protein NbS00016366g0001.1 protein NbS00034110g0005.1 protein NbS00034110g0006.1 protein NbS00034110g0007.1 protein ; (*GB) gi|255571240|ref|XP_002526570.1| (e_value=7e-16) brca1 associated ring domain, putative [Ricinus communis];; (*TAIR) AT1G04020.1 (e_value=2e-15) | Symbols: ATBARD1, BARD1, ROW1 | breast cancer associated RING 1 | chr1:1036610-1040045 FORWARD LENGTH=714;; (*ITAG) Solyc06g008210.2.1 (e_value=3e-32) genomic_reference:SL2.40ch06 gene_region:2089179-2096386 transcript_region:SL2.40ch06:2089179..2096386- go_terms:GO:0003713,GO:0003677 functional_description:"Breast cancer type 1 susceptibility protein homolog (Fragment) (AHRD V1 *--- A5A751_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0003713,GO:0003677 NbS00004295g0057.1 protein NbS00004295g0058.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=1e-28) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00004295g0019.1 protein NbS00004295g0024.1 protein NbS00004295g0025.1 protein NbS00004295g0028.1 protein NbS00004295g0031.1 protein NbS00004295g0036.1 protein NbS00004295g0039.1 protein NbS00004295g0040.1 protein NbS00004295g0061.1 protein ; (*ITAG) Solyc11g056500.1.1 (e_value=3e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43173486-43174103 transcript_region:SL2.40ch11:43173486..43174103- functional_description:"Photosystem Q(B) protein (AHRD V1 *-*- B6VJV1_VITVI)"; NbS00004295g0041.1 protein NbS00004295g0049.1 protein NbS00004295g0051.1 protein NbS00004295g0052.1 protein NbS00004295g0056.1 protein NbS00004295g0063.1 protein NbS00005807g0008.1 protein NbS00016940g0002.1 protein NbS00016940g0004.1 protein NbS00016940g0006.1 protein NbS00004996g0005.1 protein NbS00032489g0007.1 protein NbS00020661g0012.1 protein ; (*GB) gi|255585554|ref|XP_002533467.1| (e_value=5e-50) oxidoreductase, putative [Ricinus communis];; (*SWP) sp|P0A9T5|TAS_SHIFL (e_value=2e-23) Protein tas OS=Shigella flexneri GN=tas PE=3 SV=1;; (*TAIR) AT1G04420.1 (e_value=7e-48) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:1191634-1193699 FORWARD LENGTH=412;; (*ITAG) Solyc06g053600.2.1 (e_value=3e-59) genomic_reference:SL2.40ch06 gene_region:32897410-32909873 transcript_region:SL2.40ch06:32897410..32909873- go_terms:GO:0050236 functional_description:"Oxidoreductase aldo/keto reductase family protein expressed (AHRD V1 ***- Q10GW4_ORYSJ); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0050236 NbS00020661g0009.1 protein NbS00031971g0001.1 protein NbS00002398g0004.1 protein NbS00007266g0003.1 protein NbS00013032g0003.1 protein ; (*GB) gi|255576219|ref|XP_002529003.1| (e_value=2e-78) separase, putative [Ricinus communis];; (*SWP) sp|P33144|BIMB_EMENI (e_value=3e-28) Separin OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bimB PE=3 SV=2;; (*TAIR) AT4G22970.1 (e_value=4e-64) | Symbols: RSW4, AESP, ESP | homolog of separase | chr4:12033703-12043572 REVERSE LENGTH=2180;; (*ITAG) Solyc01g104490.2.1 (e_value=5e-110) genomic_reference:SL2.40ch01 gene_region:84706633-84726678 transcript_region:SL2.40ch01:84706633..84726678+ go_terms:GO:0005634,GO:0005622 functional_description:"Separin (AHRD V1 *--- C5JQX2_AJEDS); contains Interpro domain(s) IPR005314 Peptidase C50, separase "; GO:0005634,GO:0005622 NbS00042453g0006.1 protein ; (*GB) gi|57869096|gb|AAW57536.1| (e_value=2e-49) pollen-specific kinase partner protein-like protein [Solanum lycopersicum];; (*ITAG) Solyc12g044270.1.1 (e_value=2e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44606763-44609277 transcript_region:SL2.40ch12:44606763..44609277+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00050085g0002.1 protein NbS00024481g0001.1 protein NbS00010965g0002.1 protein NbS00010965g0003.1 protein NbS00018070g0004.1 protein NbS00022350g0003.1 protein NbS00059432g0002.1 protein NbS00016508g0004.1 protein ; (*GB) gi|224061153|ref|XP_002300359.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT4G37190.2 (e_value=4e-30) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17507453-17509512 FORWARD LENGTH=516;; (*ITAG) Solyc01g100190.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00007037g0006.1 protein NbS00007037g0007.1 protein ; (*ITAG) Solyc10g007770.2.1 (e_value=6e-14) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbC23714042g0001.1 protein ; (*GB) gi|2687584|gb|AAB88854.1| (e_value=1e-47) S-adenosylmethionine decarboxylase [Nicotiana tabacum];; (*SWP) sp|O80402|DCAM_NICSY (e_value=4e-49) S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1;; (*TAIR) AT5G15950.2 (e_value=5e-41) | Symbols: | Adenosylmethionine decarboxylase family protein | chr5:5206706-5207794 FORWARD LENGTH=362;; (*ITAG) Solyc05g010420.1.1 (e_value=3e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:4654381-4655463 transcript_region:SL2.40ch05:4654381..4655463- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR018167 S-adenosylmethionine decarboxylase subgroup IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00010789g0003.1 protein NbS00010789g0005.1 protein NbS00004525g0001.1 protein NbC23854757g0001.1 protein ; (*GB) gi|19568935|gb|AAL91978.1|AF483209_1 (e_value=7e-41) putative trehalose synthase [Solanum tuberosum];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=1e-28) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=9e-30) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc07g055300.2.1 (e_value=1e-42) genomic_reference:SL2.40ch07 gene_region:60708023-60714104 transcript_region:SL2.40ch07:60708023..60714104+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A1RU70_PYRIL); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00003137g0004.1 protein ; (*ITAG) Solyc02g065500.2.1 (e_value=6e-13) genomic_reference:SL2.40ch02 gene_region:31242390-31258151 transcript_region:SL2.40ch02:31242390..31258151- go_terms:GO:0016021 functional_description:"Nucleolar pre-ribosomal-associated protein 1 (AHRD V1 *--- NPA1P_HUMAN)"; GO:0016021 NbS00003137g0105.1 protein NbS00003137g0107.1 protein NbS00001626g0001.1 protein NbS00016450g0003.1 protein ; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=2e-40) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=2e-22) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT3G50620.1 (e_value=3e-24) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:18784993-18786747 REVERSE LENGTH=340;; (*ITAG) Solyc08g007110.2.1 (e_value=3e-47) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00016450g0004.1 protein NbS00016450g0005.1 protein NbS00009871g0009.1 protein NbS00006740g0007.1 protein NbS00006740g0009.1 protein NbS00058351g0002.1 protein NbS00016709g0003.1 protein NbS00011566g0002.1 protein NbS00002606g0002.1 protein NbS00001698g0011.1 protein NbS00001698g0007.1 protein NbS00013445g0001.1 protein NbS00004085g0010.1 protein NbS00042662g0004.1 protein NbS00006175g0002.1 protein NbS00006175g0104.1 protein NbS00006175g0108.1 protein NbS00054118g0002.1 protein NbS00047189g0002.1 protein NbS00047189g0003.1 protein NbS00002062g0008.1 protein ; (*ITAG) Solyc05g053320.1.1 (e_value=4e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch05 gene_region:62583300-62583965 transcript_region:SL2.40ch05:62583300..62583965+ go_terms:GO:0008270 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00026045g0002.1 protein NbS00008684g0014.1 protein NbS00008684g0008.1 protein NbS00010868g0005.1 protein NbS00010868g0006.1 protein NbS00018027g0002.1 protein ; (*ITAG) Solyc00g005420.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:2244285-2244817 transcript_region:SL2.40ch00:2244285..2244817+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003058g0005.1 protein NbS00028834g0005.1 protein NbS00014985g0002.1 protein NbS00030693g0003.1 protein ; (*ITAG) Solyc06g084030.2.1 (e_value=3e-20) genomic_reference:SL2.40ch06 gene_region:45578411-45582664 transcript_region:SL2.40ch06:45578411..45582664- go_terms:GO:0008152 functional_description:"Methyltransferase like 7A (AHRD V1 ***- Q3KRE2_RAT); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0008152 NbS00030693g0004.1 protein NbS00030693g0008.1 protein ; (*GB) gi|18402394|ref|NP_565702.1| (e_value=2e-17) E3 ubiquitin protein ligase DRIP2 [Arabidopsis thaliana];; (*SWP) sp|Q94AY3|DRIP2_ARATH (e_value=5e-19) E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2 PE=1 SV=1;; (*TAIR) AT2G30580.1 (e_value=4e-20) | Symbols: DRIP2 | DREB2A-interacting protein 2 | chr2:13026444-13030363 FORWARD LENGTH=420;; (*ITAG) Solyc06g084040.2.1 (e_value=3e-27) genomic_reference:SL2.40ch06 gene_region:45588705-45594967 transcript_region:SL2.40ch06:45588705..45594967- go_terms:GO:0004842 functional_description:"Polycomb group ring finger 1 (AHRD V1 *--- B3DL44_XENTR); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00016468g0002.1 protein NbS00027836g0004.1 protein NbS00027836g0006.1 protein NbS00000456g0108.1 protein NbC24112202g0001.1 protein ; (*TAIR) AT1G01320.1 (e_value=1e-16) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:121582-130099 REVERSE LENGTH=1797;; (*ITAG) Solyc07g006030.2.1 (e_value=5e-18) genomic_reference:SL2.40ch07 gene_region:866918-880889 transcript_region:SL2.40ch07:866918..880889- go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_COCIM); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00000963g0014.1 protein NbS00015504g0202.1 protein NbS00058737g0002.1 protein NbS00013894g0006.1 protein NbS00013894g0009.1 protein NbS00023851g0002.1 protein NbS00001973g0001.1 protein NbS00017650g0001.1 protein NbS00007673g0003.1 protein NbS00027738g0002.1 protein NbS00016086g0005.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=1e-12) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbC23567659g0001.1 protein ; (*GB) gi|350534796|ref|NP_001234416.1| (e_value=1e-34) beta-glucosidase 08 precursor [Solanum lycopersicum];; (*TAIR) AT3G55430.1 (e_value=1e-17) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:20549806-20552004 REVERSE LENGTH=449;; (*ITAG) Solyc07g005330.2.1 (e_value=2e-37) genomic_reference:SL2.40ch07 gene_region:261349-264657 transcript_region:SL2.40ch07:261349..264657- go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase (AHRD V1 ***- B6U1F1_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "; GO:0005975 NbS00011670g0004.1 protein NbS00025663g0007.1 protein NbS00025663g0008.1 protein NbS00011478g0004.1 protein ; (*GB) gi|356495605|ref|XP_003516665.1| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100795053 [Glycine max];; (*TAIR) AT5G47490.1 (e_value=8e-28) | Symbols: | RGPR-related | chr5:19264675-19270487 FORWARD LENGTH=1361;; (*ITAG) Solyc08g007360.2.1 (e_value=2e-114) genomic_reference:SL2.40ch08 gene_region:1919118-1928036 transcript_region:SL2.40ch08:1919118..1928036- go_terms:GO:0032259 functional_description:"COPII coat assembly protein SEC16 (AHRD V1 *-*- C5FKS9_NANOT)"; GO:0032259 NbS00011478g0005.1 protein ; (*ITAG) Solyc08g007340.2.1 (e_value=9e-31) genomic_reference:SL2.40ch08 gene_region:1909110-1917569 transcript_region:SL2.40ch08:1909110..1917569+ go_terms:GO:0032259 functional_description:"COPII coat assembly protein sec16 (AHRD V1 *-*- B2W276_PYRTR)"; GO:0032259 NbS00011478g0006.1 protein NbS00008542g0004.1 protein NbS00016127g0006.1 protein NbS00006199g0006.1 protein NbS00006199g0007.1 protein NbS00045876g0002.1 protein NbS00004166g0003.1 protein NbS00015900g0002.1 protein NbS00023233g0005.1 protein ; (*GB) gi|357514399|ref|XP_003627488.1| (e_value=2e-15) hypothetical protein MTR_8g023650 [Medicago truncatula]; NbS00023233g0008.1 protein ; (*GB) gi|255553821|ref|XP_002517951.1| (e_value=8e-38) protein with unknown function [Ricinus communis];; (*TAIR) AT2G14830.1 (e_value=3e-33) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6365818 FORWARD LENGTH=454;; (*ITAG) Solyc12g010700.1.1 (e_value=3e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3630935-3632819 transcript_region:SL2.40ch12:3630935..3632819- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00023233g0105.1 protein NbS00023233g0107.1 protein NbS00037612g0005.1 protein NbS00035975g0004.1 protein NbS00035975g0006.1 protein NbS00054877g0005.1 protein NbS00003862g0004.1 protein NbS00051598g0002.1 protein NbS00015767g0008.1 protein NbS00001062g0008.1 protein NbS00007326g0011.1 protein NbS00007326g0017.1 protein NbS00007326g0009.1 protein ; (*GB) gi|359491076|ref|XP_003634215.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100264568 isoform 2 [Vitis vinifera];; (*TAIR) AT5G63460.4 (e_value=4e-19) | Symbols: | SAP domain-containing protein | chr5:25413605-25415399 REVERSE LENGTH=174;; (*ITAG) Solyc03g111270.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:55935333-55940921 transcript_region:SL2.40ch03:55935333..55940921+ go_terms:GO:0003676 functional_description:"DNA binding protein (AHRD V1 ***- B6T3K5_MAIZE); contains Interpro domain(s) IPR018276 Ubiquitin ligase, Det1/DDB1-complexing "; GO:0003676 NbC24270504g0002.1 protein ; (*GB) gi|297745216|emb|CBI40296.3| (e_value=5e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=6e-35) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=5e-36) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094220.2.1 (e_value=3e-40) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00002876g0004.1 protein NbS00017044g0009.1 protein NbS00039073g0001.1 protein NbS00045183g0007.1 protein ; (*GB) gi|255586949|ref|XP_002534074.1| (e_value=3e-17) Peptide transporter, putative [Ricinus communis];; (*SWP) sp|P0CI03|PTR28_ARATH (e_value=2e-14) Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1;; (*TAIR) AT2G37900.1 (e_value=1e-15) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084950.1.1 (e_value=6e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00031117g0003.1 protein NbS00032749g0005.1 protein NbS00046291g0007.1 protein NbS00046291g0008.1 protein ; (*GB) gi|224125812|ref|XP_002319681.1| (e_value=3e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT1G54400.1 (e_value=5e-20) | Symbols: | HSP20-like chaperones superfamily protein | chr1:20307667-20308768 FORWARD LENGTH=183;; (*ITAG) Solyc10g076880.1.1 (e_value=7e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59187079-59187814 transcript_region:SL2.40ch10:59187079..59187814+ functional_description:"Hsp20/alpha crystallin family protein expressed (AHRD V1 **-- Q10FT7_ORYSJ); contains Interpro domain(s) IPR008978 HSP20-like chaperone "; NbS00021897g0008.1 protein NbS00009509g0002.1 protein NbS00022368g0006.1 protein NbS00022368g0008.1 protein NbS00009767g0007.1 protein NbS00015550g0005.1 protein NbS00036532g0001.1 protein NbS00036532g0003.1 protein NbS00043177g0001.1 protein ; (*GB) gi|356572190|ref|XP_003554253.1| (e_value=2e-17) PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Glycine max];; (*TAIR) AT3G63200.1 (e_value=2e-15) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00038330g0005.1 protein ; (*GB) gi|75098910|sp|O49814.1|BCH2_CAPAN (e_value=2e-24) RecName: Full=Beta-carotene hydroxylase 2, chloroplastic; Flags: Precursor;; (*SWP) sp|O49814|BCH2_CAPAN (e_value=5e-26) Beta-carotene hydroxylase 2, chloroplastic (Fragment) OS=Capsicum annuum GN=CA2 PE=2 SV=1;; (*TAIR) AT5G52570.1 (e_value=1e-16) | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene hydroxylase 2 | chr5:21334911-21336887 REVERSE LENGTH=303;; (*ITAG) Solyc03g007960.2.1 (e_value=2e-26) genomic_reference:SL2.40ch03 gene_region:2447872-2450289 transcript_region:SL2.40ch03:2447872..2450289+ go_terms:GO:0010291 functional_description:"Beta-carotene hydroxylase 2"; GO:0010291 NbS00038330g0006.1 protein ; (*GB) gi|357467493|ref|XP_003604031.1| (e_value=6e-70) hypothetical protein MTR_3g117760 [Medicago truncatula];; (*TAIR) AT2G16630.1 (e_value=5e-42) | Symbols: | Pollen Ole e 1 allergen and extensin family protein | chr2:7209286-7210872 FORWARD LENGTH=359;; (*ITAG) Solyc01g111210.2.1 (e_value=5e-93) genomic_reference:SL2.40ch01 gene_region:89303121-89308860 transcript_region:SL2.40ch01:89303121..89308860+ go_terms:GO:0004040 functional_description:"Glutamyl-tRNA(Gln) amidotransferase subunit A (AHRD V1 ***- B6JZE9_SCHJY); contains Interpro domain(s) IPR000120 Amidase signature enzyme "; GO:0004040 NbS00038330g0009.1 protein NbS00030531g0001.1 protein ; (*GB) gi|255580669|ref|XP_002531157.1| (e_value=4e-16) zinc finger protein, putative [Ricinus communis];; (*SWP) sp|Q3EAQ9|GDL55_ARATH (e_value=7e-15) GDSL esterase/lipase At3g43550 OS=Arabidopsis thaliana GN=At3g43550 PE=2 SV=2;; (*TAIR) AT3G43550.1 (e_value=5e-16) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr3:15448635-15449870 FORWARD LENGTH=288;; (*ITAG) Solyc12g089350.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62923331-62926988 transcript_region:SL2.40ch12:62923331..62926988+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00015353g0006.1 protein NbS00008391g0006.1 protein ; (*GB) gi|3549681|emb|CAA20592.1| (e_value=6e-38) male sterility 2-like protein [Arabidopsis thaliana];; (*SWP) sp|Q93ZB9|FACR3_ARATH (e_value=3e-39) Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1;; (*TAIR) AT4G33790.1 (e_value=3e-40) | Symbols: CER4, G7, FAR3 | Jojoba acyl CoA reductase-related male sterility protein | chr4:16204325-16207891 REVERSE LENGTH=493;; (*ITAG) Solyc11g067180.1.1 (e_value=2e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50014211-50020961 transcript_region:SL2.40ch11:50014211..50020961- go_terms:GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0080019 NbS00009814g0201.1 protein NbS00059581g0002.1 protein NbS00006097g0011.1 protein ; (*GB) gi|296084389|emb|CBI24777.3| (e_value=4e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|P31230|AIMP1_MOUSE (e_value=1e-19) Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2;; (*TAIR) AT3G59980.1 (e_value=5e-52) | Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:22154528-22155570 REVERSE LENGTH=273;; (*ITAG) Solyc08g015960.2.1 (e_value=5e-73) genomic_reference:SL2.40ch08 gene_region:6322020-6329392 transcript_region:SL2.40ch08:6322020..6329392+ go_terms:GO:0000049 functional_description:"Methionyl-tRNA synthetase (AHRD V1 *-*- B6T3D4_MAIZE); contains Interpro domain(s) IPR002547 tRNA-binding region "; GO:0000049 NbS00013090g0006.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=9e-15) predicted protein [Populus trichocarpa]; NbS00013090g0007.1 protein NbS00006315g0008.1 protein NbS00044523g0003.1 protein NbS00044523g0004.1 protein NbS00004645g0008.1 protein ; (*GB) gi|356527508|ref|XP_003532351.1| (e_value=1e-29) PREDICTED: LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like [Glycine max];; (*SWP) sp|Q767K6|DHX16_PIG (e_value=9e-19) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1;; (*TAIR) AT1G32490.2 (e_value=4e-31) | Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034;; (*ITAG) Solyc03g115390.2.1 (e_value=1e-32) genomic_reference:SL2.40ch03 gene_region:59161894-59177277 transcript_region:SL2.40ch03:59161894..59177277- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16S17_AEDAE); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00004011g0002.1 protein NbS00041329g0004.1 protein NbS00001108g0008.1 protein NbS00001108g0009.1 protein NbS00060783g0001.1 protein NbC23600465g0001.1 protein ; (*GB) gi|224090825|ref|XP_002334993.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LSW8|ETFB_ARATH (e_value=4e-32) Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1;; (*TAIR) AT5G43430.2 (e_value=6e-34) | Symbols: ETFBETA | electron transfer flavoprotein beta | chr5:17453656-17454872 FORWARD LENGTH=178;; (*ITAG) Solyc09g089880.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:64846851-64850243 transcript_region:SL2.40ch09:64846851..64850243- go_terms:GO:0009055 functional_description:"Electron transfer flavoprotein beta-subunit (AHRD V1 **** B6TPR6_MAIZE); contains Interpro domain(s) IPR012255 Electron transfer flavoprotein, beta subunit "; GO:0009055 NbS00015134g0002.1 protein NbS00008897g0008.1 protein NbS00007823g0002.1 protein NbS00007823g0003.1 protein NbS00007823g0004.1 protein NbS00028725g0005.1 protein ; (*ITAG) Solyc08g068960.2.1 (e_value=1e-14) genomic_reference:SL2.40ch08 gene_region:55242155-55249351 transcript_region:SL2.40ch08:55242155..55249351+ go_terms:GO:0004673 functional_description:"Histidine kinase 1 (AHRD V1 *-** Q9FRY7_MAIZE); contains Interpro domain(s) IPR004358 Signal transduction histidine kinase-related protein, C-terminal "; GO:0004673 NbS00058664g0005.1 protein NbS00058664g0007.1 protein NbS00028180g0003.1 protein NbS00028180g0005.1 protein NbS00036065g0001.1 protein NbS00000579g0012.1 protein NbS00007636g0003.1 protein NbS00023246g0002.1 protein ; (*GB) gi|117557160|gb|ABK35757.1| (e_value=2e-125) sulfate transporter [Populus tremula x Populus alba];; (*SWP) sp|Q9FY46|SUT41_ARATH (e_value=1e-106) Sulfate transporter 4.1, chloroplastic OS=Arabidopsis thaliana GN=SULTR4;1 PE=2 SV=1;; (*TAIR) AT5G13550.1 (e_value=7e-108) | Symbols: SULTR4;1 | sulfate transporter 4.1 | chr5:4355412-4359490 REVERSE LENGTH=685;; (*ITAG) Solyc05g054740.2.1 (e_value=9e-166) genomic_reference:SL2.40ch05 gene_region:63739210-63747859 transcript_region:SL2.40ch05:63739210..63747859+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00023524g0005.1 protein NbS00023524g0008.1 protein ; (*GB) gi|356505332|ref|XP_003521445.1| (e_value=3e-19) PREDICTED: fructose-bisphosphate aldolase, cytoplasmic isozyme [Glycine max];; (*SWP) sp|P29356|ALF_SPIOL (e_value=3e-17) Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1;; (*TAIR) AT2G36460.1 (e_value=4e-21) | Symbols: | Aldolase superfamily protein | chr2:15296929-15298387 REVERSE LENGTH=358;; (*ITAG) Solyc10g005920.2.1 (e_value=2e-31) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00023524g0009.1 protein NbS00023524g0010.1 protein NbS00057927g0003.1 protein NbS00001029g0002.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=1e-39) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=2e-34) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=7e-54) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00001029g0003.1 protein NbS00024313g0002.1 protein NbS00014551g0004.1 protein NbS00007057g0003.1 protein ; (*GB) gi|224134134|ref|XP_002327764.1| (e_value=1e-21) predicted protein [Populus trichocarpa];; (*TAIR) AT2G36430.1 (e_value=7e-16) | Symbols: | Plant protein of unknown function (DUF247) | chr2:15290211-15291557 FORWARD LENGTH=448;; (*ITAG) Solyc09g009230.1.1 (e_value=1e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:2614462-2617388 transcript_region:SL2.40ch09:2614462..2617388- functional_description:"AT5g22550/MQJ16_9 (AHRD V1 ***- Q940U3_ARATH); contains Interpro domain(s) IPR004158 Protein of unknown function DUF247, plant "; NbS00007057g0004.1 protein NbS00007057g0006.1 protein NbS00048817g0001.1 protein ; (*GB) gi|255556438|ref|XP_002519253.1| (e_value=3e-16) galactokinase, putative [Ricinus communis];; (*ITAG) Solyc01g058390.2.1 (e_value=2e-15) genomic_reference:SL2.40ch01 gene_region:59252697-59258614 transcript_region:SL2.40ch01:59252697..59258614- go_terms:GO:0004335 functional_description:"Galactokinase (AHRD V1 **** B6V3B9_CUCME); contains Interpro domain(s) IPR000705 Galactokinase "; GO:0004335 NbS00016795g0004.1 protein NbS00046450g0011.1 protein NbS00022952g0002.1 protein ; (*GB) gi|357438517|ref|XP_003589534.1| (e_value=8e-56) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q94CH6|EXL3_ARATH (e_value=8e-51) GDSL esterase/lipase EXL3 OS=Arabidopsis thaliana GN=EXL3 PE=2 SV=1;; (*TAIR) AT1G75900.1 (e_value=6e-52) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:28499179-28500943 FORWARD LENGTH=364;; (*ITAG) Solyc12g089350.1.1 (e_value=4e-83) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62923331-62926988 transcript_region:SL2.40ch12:62923331..62926988+ go_terms:GO:0006629 functional_description:"GDSL esterase/lipase At5g42170 (AHRD V1 ***- GDL90_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0006629 NbS00009234g0002.1 protein NbS00009234g0006.1 protein ; (*ITAG) Solyc04g049970.2.1 (e_value=2e-17) genomic_reference:SL2.40ch04 gene_region:44105936-44114322 transcript_region:SL2.40ch04:44105936..44114322- functional_description:"Os11g0133900 protein (Fragment) (AHRD V1 ***- Q0IUU7_ORYSJ); contains Interpro domain(s) IPR018471 ATP synthase assembly factor FMC1, mitochondrial "; NbS00009234g0103.1 protein NbS00009234g0107.1 protein NbS00035818g0005.1 protein NbS00035818g0007.1 protein NbS00017095g0007.1 protein NbS00017095g0008.1 protein NbS00005955g0008.1 protein NbS00005955g0010.1 protein NbS00001972g0005.1 protein NbS00037072g0001.1 protein NbS00011588g0101.1 protein NbS00011588g0203.1 protein NbS00011588g0206.1 protein NbS00026756g0003.1 protein NbS00029653g0002.1 protein NbS00062142g0001.1 protein NbS00046477g0001.1 protein NbS00004510g0004.1 protein NbS00040666g0003.1 protein NbS00017498g0006.1 protein NbS00014778g0002.1 protein ; (*ITAG) Solyc06g011460.1.1 (e_value=1e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00048997g0003.1 protein NbS00024976g0004.1 protein ; (*ITAG) Solyc02g086750.1.1 (e_value=1e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00024976g0005.1 protein ; (*GB) gi|224134504|ref|XP_002327421.1| (e_value=3e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LVZ8|LOR12_ARATH (e_value=2e-32) Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1;; (*TAIR) AT3G15810.1 (e_value=2e-33) | Symbols: | Protein of unknown function (DUF567) | chr3:5348054-5349178 REVERSE LENGTH=220;; (*ITAG) Solyc03g116710.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:60053388-60054523 transcript_region:SL2.40ch03:60053388..60054523- functional_description:"GTP binding protein (AHRD V1 ***- B6TE93_MAIZE); contains Interpro domain(s) IPR007612 Protein of unknown function DUF567 "; NbS00024976g0008.1 protein NbS00003580g0003.1 protein NbS00029786g0006.1 protein NbS00029786g0007.1 protein NbS00029786g0008.1 protein NbS00029786g0010.1 protein NbS00014257g0002.1 protein NbS00007464g0004.1 protein NbS00007464g0006.1 protein ; (*GB) gi|255542434|ref|XP_002512280.1| (e_value=6e-25) eukaryotic translation initiation factor 2b, epsilon subunit, putative [Ricinus communis];; (*TAIR) AT2G34970.1 (e_value=4e-14) | Symbols: | Trimeric LpxA-like enzyme | chr2:14746340-14748532 FORWARD LENGTH=730;; (*ITAG) Solyc01g098180.2.1 (e_value=1e-52) genomic_reference:SL2.40ch01 gene_region:80518530-80532803 transcript_region:SL2.40ch01:80518530..80532803- go_terms:GO:0005085 functional_description:"Translation initiation factor eIF-2B subunit epsilon (AHRD V1 **** B6K2K2_SCHJY); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0005085 NbS00029382g0003.1 protein ; (*GB) gi|224117680|ref|XP_002317641.1| (e_value=5e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT1G78690.1 (e_value=4e-30) | Symbols: | Phospholipid/glycerol acyltransferase family protein | chr1:29597002-29598409 FORWARD LENGTH=284;; (*ITAG) Solyc02g068360.2.1 (e_value=7e-39) genomic_reference:SL2.40ch02 gene_region:32897572-32901128 transcript_region:SL2.40ch02:32897572..32901128- go_terms:GO:0047184 functional_description:"Tafazzin (AHRD V1 ***- C1BN32_9MAXI); contains Interpro domain(s) IPR000872 Tafazzin "; GO:0047184 NbS00036468g0003.1 protein NbS00022966g0005.1 protein NbS00015078g0020.1 protein ; (*ITAG) Solyc03g115200.2.1 (e_value=1e-13) genomic_reference:SL2.40ch03 gene_region:59049950-59054055 transcript_region:SL2.40ch03:59049950..59054055- functional_description:"Glucan endo-1 3-beta-glucosidase 1 (AHRD V1 *-*- B6TW10_MAIZE); contains Interpro domain(s) IPR012946 X8 "; NbS00016439g0002.1 protein NbS00045116g0002.1 protein NbS00037790g0005.1 protein NbS00055450g0003.1 protein NbS00006272g0016.1 protein NbS00006272g0008.1 protein NbS00010831g0005.1 protein NbS00016947g0005.1 protein ; (*GB) gi|224132468|ref|XP_002328285.1| (e_value=7e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SZL7|FRS9_ARATH (e_value=2e-15) Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2;; (*TAIR) AT4G38170.1 (e_value=1e-16) | Symbols: FRS9 | FAR1-related sequence 9 | chr4:17904613-17906439 FORWARD LENGTH=545;; (*ITAG) Solyc07g008700.2.1 (e_value=5e-21) genomic_reference:SL2.40ch07 gene_region:3667866-3675747 transcript_region:SL2.40ch07:3667866..3675747+ go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 9 (AHRD V1 ***- FRS9_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00016947g0006.1 protein NbS00021306g0004.1 protein NbS00000050g0008.1 protein ; (*ITAG) Solyc12g017310.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:6539479-6542269 transcript_region:SL2.40ch12:6539479..6542269- functional_description:"DCN1-like protein 2 (AHRD V1 ***- B6TM27_MAIZE); contains Interpro domain(s) IPR014764 Defective in cullin neddylation "; NbS00000050g0105.1 protein NbS00046042g0001.1 protein NbS00040887g0006.1 protein NbS00008825g0014.1 protein NbS00004613g0007.1 protein NbS00004613g0009.1 protein NbS00006018g0006.1 protein NbS00006018g0008.1 protein NbS00005305g0001.1 protein ; (*GB) gi|115441737|ref|NP_001045148.1| (e_value=6e-30) Os01g0909200 [Oryza sativa Japonica Group];; (*SWP) sp|Q5N870|DCL3A_ORYSJ (e_value=2e-31) Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1;; (*TAIR) AT3G03300.3 (e_value=5e-15) | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 REVERSE LENGTH=1388;; (*ITAG) Solyc08g067200.1.1 (e_value=2e-60) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:53414424-53429031 transcript_region:SL2.40ch08:53414424..53429031+ go_terms:GO:0008026 functional_description:"Dicer-like 3 (AHRD V1 ***- B3SRQ0_PHYPA); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00005692g0003.1 protein ; (*GB) gi|209977652|gb|ACJ04334.1| (e_value=9e-30) ubiquitin specific protease 12 [Nicotiana tabacum];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=2e-21) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=1e-22) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc05g055090.2.1 (e_value=2e-34) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00060499g0003.1 protein NbS00008842g0008.1 protein ; (*GB) gi|147817785|emb|CAN75585.1| (e_value=3e-50) hypothetical protein VITISV_017140 [Vitis vinifera];; (*SWP) sp|Q8YRU9|TKT_NOSS1 (e_value=2e-25) Transketolase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=tkt PE=1 SV=1;; (*TAIR) AT3G60750.2 (e_value=2e-28) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=740;; (*ITAG) Solyc01g018020.1.1 (e_value=9e-78) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:26846738-26852758 transcript_region:SL2.40ch01:26846738..26852758+ go_terms:GO:0004802,GO:0008152 functional_description:"Transketolase-like protein (AHRD V1 ***- Q8LE99_ARATH); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0008152 NbC25940621g0002.1 protein ; (*GB) gi|302143619|emb|CBI22372.3| (e_value=2e-42) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G28900.1 (e_value=6e-35) | Symbols: | Calcium-binding EF-hand family protein | chr5:10925852-10929892 FORWARD LENGTH=536;; (*ITAG) Solyc04g010070.2.1 (e_value=2e-51) genomic_reference:SL2.40ch04 gene_region:3365037-3378848 transcript_region:SL2.40ch04:3365037..3378848+ go_terms:GO:0005509 functional_description:"Protein phosphatase 2A regulatory subunit B&apos-like protein (AHRD V1 ***- Q56WJ0_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00014363g0002.1 protein ; (*GB) gi|238014184|gb|ACR38127.1| (e_value=5e-18) unknown [Zea mays];; (*SWP) sp|P57758|CTNS_ARATH (e_value=5e-14) Cystinosin homolog OS=Arabidopsis thaliana GN=At5g40670 PE=2 SV=1;; (*TAIR) AT5G40670.1 (e_value=4e-15) | Symbols: | PQ-loop repeat family protein / transmembrane family protein | chr5:16285968-16287591 FORWARD LENGTH=270;; (*ITAG) Solyc02g093700.2.1 (e_value=2e-22) genomic_reference:SL2.40ch02 gene_region:49026605-49028469 transcript_region:SL2.40ch02:49026605..49028469+ go_terms:GO:0015184 functional_description:"Cystine transporter Cystinosin (AHRD V1 *-** Q2URL9_ASPOR); contains Interpro domain(s) IPR005282 Lysosomal cystine transporter "; GO:0015184 NbS00020674g0005.1 protein NbS00020674g0006.1 protein NbS00020674g0008.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis]; NbS00035242g0012.1 protein NbS00035242g0014.1 protein NbS00035242g0009.1 protein NbS00016081g0012.1 protein NbS00016081g0006.1 protein NbS00022793g0003.1 protein NbS00014448g0002.1 protein NbS00017495g0006.1 protein NbS00015222g0006.1 protein NbS00015222g0007.1 protein NbS00015222g0008.1 protein NbS00015222g0010.1 protein NbS00015538g0005.1 protein NbS00032473g0001.1 protein NbS00001962g0007.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=5e-32) nam-like protein 1 [Petunia x hybrida];; (*ITAG) Solyc06g073050.2.1 (e_value=5e-32) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00001962g0010.1 protein ; (*ITAG) Solyc08g075090.2.1 (e_value=2e-13) genomic_reference:SL2.40ch08 gene_region:56410976-56415969 transcript_region:SL2.40ch08:56410976..56415969- go_terms:GO:0005840,GO:0015934,GO:0005634,GO:0045449 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0005840,GO:0015934,GO:0005634,GO:0045449 NbS00037062g0001.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=6e-14) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=6e-25) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00025643g0008.1 protein NbS00025643g0009.1 protein NbS00027733g0002.1 protein NbS00036382g0006.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=2e-41) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00001609g0005.1 protein ; (*GB) gi|7019677|emb|CAB75802.1| (e_value=7e-18) putative protein [Arabidopsis thaliana];; (*TAIR) AT3G59830.1 (e_value=2e-20) | Symbols: | Integrin-linked protein kinase family | chr3:22103006-22105323 REVERSE LENGTH=477;; (*ITAG) Solyc12g019410.1.1 (e_value=8e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00001609g0006.1 protein NbS00044208g0001.1 protein NbS00003537g0011.1 protein NbS00003537g0015.1 protein NbS00003537g0009.1 protein NbS00012547g0002.1 protein NbS00012547g0007.1 protein NbS00050380g0011.1 protein ; (*GB) gi|224075299|ref|XP_002304589.1| (e_value=1e-24) nbs-lrr resistance protein [Populus trichocarpa];; (*SWP) sp|Q8W4J9|RPP8_ARATH (e_value=6e-15) Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2;; (*TAIR) AT5G43470.2 (e_value=5e-16) | Symbols: RPP8, HRT, RCY1 | Disease resistance protein (CC-NBS-LRR class) family | chr5:17463130-17466658 REVERSE LENGTH=908;; (*ITAG) Solyc12g094660.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63160675-63163791 transcript_region:SL2.40ch12:63160675..63163791- go_terms:GO:0005515 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515 NbS00050380g0006.1 protein NbS00058091g0004.1 protein NbS00029085g0015.1 protein ; (*GB) gi|224128472|ref|XP_002329012.1| (e_value=2e-157) predicted protein [Populus trichocarpa];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=4e-28) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=1e-110) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc03g116840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbS00029085g0009.1 protein ; (*GB) gi|255553241|ref|XP_002517663.1| (e_value=1e-59) signal recognition particle 54 kD protein, putative [Ricinus communis];; (*SWP) sp|P49967|SR543_ARATH (e_value=6e-58) Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2;; (*TAIR) AT1G48900.1 (e_value=5e-59) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18084972-18087743 REVERSE LENGTH=495;; (*ITAG) Solyc03g116810.2.1 (e_value=5e-56) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00012896g0003.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00003721g0003.1 protein NbS00007800g0010.1 protein NbS00044605g0001.1 protein NbS00030055g0004.1 protein NbS00001739g0001.1 protein NbS00028372g0002.1 protein NbS00018211g0008.1 protein NbS00007009g0005.1 protein NbS00001526g0204.1 protein NbS00022037g0009.1 protein NbS00047419g0004.1 protein NbS00047419g0005.1 protein NbS00030886g0002.1 protein ; (*GB) gi|255637205|gb|ACU18933.1| (e_value=2e-23) unknown [Glycine max];; (*SWP) sp|Q9VR89|PNO1_DROME (e_value=7e-17) RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=2 SV=1;; (*TAIR) AT3G13230.1 (e_value=1e-24) | Symbols: | RNA-binding KH domain-containing protein | chr3:4270423-4271070 FORWARD LENGTH=215;; (*ITAG) Solyc06g082620.1.1 (e_value=3e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:44670745-44671383 transcript_region:SL2.40ch06:44670745..44671383- go_terms:GO:0051082 functional_description:"RNA-binding protein PNO1-like protein (AHRD V1 **** D0MTT7_PHYIN); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051082 NbS00043459g0003.1 protein NbS00007762g0103.1 protein NbS00007762g0209.1 protein NbS00041680g0011.1 protein ; (*ITAG) Solyc01g059760.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00041680g0015.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00041680g0010.1 protein ; (*GB) gi|37781556|gb|AAP42567.1| (e_value=1e-44) UDP-glucose 4-epimerase [Solanum tuberosum];; (*SWP) sp|O65781|GALE2_CYATE (e_value=9e-45) UDP-glucose 4-epimerase GEPI48 OS=Cyamopsis tetragonoloba PE=2 SV=1;; (*TAIR) AT4G10960.1 (e_value=1e-40) | Symbols: UGE5 | UDP-D-glucose/UDP-D-galactose 4-epimerase 5 | chr4:6716083-6718472 REVERSE LENGTH=351;; (*ITAG) Solyc08g082440.2.1 (e_value=2e-48) genomic_reference:SL2.40ch08 gene_region:62414609-62418848 transcript_region:SL2.40ch08:62414609..62418848+ go_terms:GO:0003978,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** Q6XZA0_SOLTU); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0003978,GO:0042803 NbS00011322g0002.1 protein NbS00022329g0004.1 protein ; (*GB) gi|296089323|emb|CBI39095.3| (e_value=1e-24) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FG13|CXE15_ARATH (e_value=2e-15) Probable carboxylesterase 15 OS=Arabidopsis thaliana GN=CXE15 PE=2 SV=1;; (*TAIR) AT5G06570.2 (e_value=2e-16) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:2008075-2011013 REVERSE LENGTH=329;; (*ITAG) Solyc11g071720.1.1 (e_value=7e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52207795-52209357 transcript_region:SL2.40ch11:52207795..52209357+ go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_ECOSM); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00022709g0003.1 protein NbS00011937g0002.1 protein NbS00016817g0004.1 protein NbS00000391g0005.1 protein ; (*GB) gi|359493766|ref|XP_002279336.2| (e_value=3e-17) PREDICTED: ABC transporter B family member 15-like [Vitis vinifera];; (*ITAG) Solyc05g013900.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:7344240-7345552 transcript_region:SL2.40ch05:7344240..7345552- go_terms:GO:0016021 functional_description:"Abc transporter family protein (AHRD V1 ***- D7LPS8_ARALY); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0016021 NbS00000391g0104.1 protein NbS00000391g0107.1 protein NbS00000391g0109.1 protein NbS00000391g0306.1 protein NbS00022374g0008.1 protein ; (*GB) gi|224105827|ref|XP_002313946.1| (e_value=3e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64510.1 (e_value=3e-63) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=7e-91) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00026394g0002.1 protein NbS00021595g0007.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-15) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00041933g0001.1 protein ; (*ITAG) Solyc12g038200.1.1 (e_value=1e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34575109-34580812 transcript_region:SL2.40ch12:34575109..34580812- go_terms:GO:0030117,GO:0005488 functional_description:"Coatomer subunit gamma (AHRD V1 *-*- B6SV32_MAIZE); contains Interpro domain(s) IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal "; GO:0030117,GO:0005488 NbS00020547g0001.1 protein NbS00019800g0003.1 protein NbS00019800g0006.1 protein NbS00004809g0002.1 protein NbS00048989g0001.1 protein NbS00024312g0012.1 protein NbS00024312g0006.1 protein NbS00024312g0008.1 protein NbS00024312g0009.1 protein NbS00024312g0010.1 protein ; (*ITAG) Solyc11g040240.1.1 (e_value=2e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30306489-30315715 transcript_region:SL2.40ch11:30306489..30315715+ functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q3S7_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00022510g0003.1 protein NbS00004218g0004.1 protein NbS00004218g0106.1 protein NbS00020578g0002.1 protein NbS00013656g0008.1 protein NbS00021151g0004.1 protein NbS00021151g0006.1 protein NbS00047903g0003.1 protein ; (*GB) gi|255556820|ref|XP_002519443.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G36810.1 (e_value=5e-18) | Symbols: | ARM repeat superfamily protein | chr2:15425739-15439462 REVERSE LENGTH=1716;; (*ITAG) Solyc09g008490.2.1 (e_value=1e-29) genomic_reference:SL2.40ch09 gene_region:1945871-1983208 transcript_region:SL2.40ch09:1945871..1983208+ go_terms:GO:0005488 functional_description:"HEAT repeat family protein expressed (AHRD V1 *-*- Q10RT3_ORYSJ); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00047903g0004.1 protein NbS00047903g0005.1 protein ; (*GB) gi|110740348|dbj|BAF02069.1| (e_value=4e-17) HSR201 like protein [Arabidopsis thaliana];; (*TAIR) AT4G15390.1 (e_value=1e-19) | Symbols: | HXXXD-type acyl-transferase family protein | chr4:8792941-8794281 REVERSE LENGTH=446;; (*ITAG) Solyc01g008300.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2405018-2406951 transcript_region:SL2.40ch01:2405018..2406951- go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase-like protein (AHRD V1 **-* B9IAS9_POPTR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00004805g0011.1 protein NbS00004805g0006.1 protein NbS00004805g0008.1 protein NbS00029190g0004.1 protein NbS00044511g0003.1 protein NbS00009189g0001.1 protein NbS00010710g0003.1 protein NbS00013130g0005.1 protein NbS00005406g0003.1 protein ; (*ITAG) Solyc08g005380.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:286490-286957 transcript_region:SL2.40ch08:286490..286957+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016160g0001.1 protein NbS00016160g0002.1 protein NbC24188770g0002.1 protein ; (*GB) gi|224120700|ref|XP_002330930.1| (e_value=2e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SRU2|BIG_ARATH (e_value=7e-41) Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=2 SV=2;; (*TAIR) AT3G02260.1 (e_value=5e-42) | Symbols: BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 | auxin transport protein (BIG) | chr3:431152-448489 REVERSE LENGTH=5098;; (*ITAG) Solyc02g089260.2.1 (e_value=5e-51) genomic_reference:SL2.40ch02 gene_region:45704210-45726943 transcript_region:SL2.40ch02:45704210..45726943+ go_terms:GO:0005488,GO:0008270,GO:0005622 functional_description:"E3 ubiquitin-protein ligase UBR4 (AHRD V1 *--- UBR4_HUMAN); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0005488,GO:0008270,GO:0005622 NbS00047808g0011.1 protein NbS00047808g0008.1 protein NbS00009020g0003.1 protein NbS00008016g0002.1 protein ; (*ITAG) Solyc03g082710.2.1 (e_value=7e-29) genomic_reference:SL2.40ch03 gene_region:46168735-46172290 transcript_region:SL2.40ch03:46168735..46172290- go_terms:GO:0003676,GO:0000166 functional_description:"U2 small nuclear ribonucleoprotein B (AHRD V1 *--- A8QKB2_MUSSP); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00014914g0008.1 protein NbS00054244g0001.1 protein NbS00009181g0011.1 protein NbS00009181g0012.1 protein NbS00009181g0013.1 protein ; (*GB) gi|297734508|emb|CBI15755.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G50930.1 (e_value=2e-19) | Symbols: | Histone superfamily protein | chr5:20722069-20724317 FORWARD LENGTH=242;; (*ITAG) Solyc07g054400.1.1 (e_value=3e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:60051104-60051544 transcript_region:SL2.40ch07:60051104..60051544+ go_terms:GO:0003677 functional_description:"Centromere protein S (AHRD V1 *-*- CENPS_HUMAN); contains Interpro domain(s) IPR009072 Histone-fold "; GO:0003677 NbS00009181g0014.1 protein NbS00057000g0004.1 protein ; (*ITAG) Solyc08g081430.2.1 (e_value=3e-27) genomic_reference:SL2.40ch08 gene_region:61664027-61670068 transcript_region:SL2.40ch08:61664027..61670068+ functional_description:"TIM21-like protein mitochondrial (AHRD V1 ***- C3KHJ2_ANOFI); contains Interpro domain(s) IPR013261 Mitochondrial inner membrane translocase complex, subunit Tim21 "; NbS00028297g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00023996g0002.1 protein NbS00058924g0002.1 protein NbS00016448g0002.1 protein NbS00013248g0006.1 protein NbS00033093g0002.1 protein NbS00028426g0003.1 protein NbS00034261g0006.1 protein NbS00029386g0009.1 protein ; (*GB) gi|224056311|ref|XP_002298798.1| (e_value=3e-48) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZQR4|Y2452_ARATH (e_value=4e-42) DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2;; (*TAIR) AT2G14520.1 (e_value=3e-43) | Symbols: | CBS domain-containing protein with a domain of unknown function (DUF21) | chr2:6182362-6184648 REVERSE LENGTH=423;; (*ITAG) Solyc01g106570.2.1 (e_value=1e-58) genomic_reference:SL2.40ch01 gene_region:86153651-86159586 transcript_region:SL2.40ch01:86153651..86159586- go_terms:GO:0005515 functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- CORC_BUCAP); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; GO:0005515 NbS00057898g0002.1 protein NbS00060998g0002.1 protein ; (*GB) gi|186515781|ref|NP_001119107.1| (e_value=2e-42) calmodulin-binding protein [Arabidopsis thaliana];; (*TAIR) AT4G33050.4 (e_value=4e-45) | Symbols: EDA39 | calmodulin-binding family protein | chr4:15945235-15946736 REVERSE LENGTH=336;; (*ITAG) Solyc12g008960.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2266946-2269413 transcript_region:SL2.40ch12:2266946..2269413+ functional_description:"Calmodulin-binding protein (AHRD V1 ***- A2I5F3_BETVU)"; NbS00001026g0001.1 protein ; (*GB) gi|257831431|gb|ACV71016.1| (e_value=2e-26) UPA16 [Capsicum annuum];; (*ITAG) Solyc03g097870.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:53636549-53638995 transcript_region:SL2.40ch03:53636549..53638995+ go_terms:GO:0016021 functional_description:"MtN3-like protein (AHRD V1 **-- Q9LUE3_ARATH); contains Interpro domain(s) IPR018179 RAG1-activating protein 1 homologue "; GO:0016021 NbS00060817g0001.1 protein NbC24317313g0001.1 protein ; (*GB) gi|255550257|ref|XP_002516179.1| (e_value=2e-52) guanine nucleotide-exchange, putative [Ricinus communis];; (*TAIR) AT3G43300.2 (e_value=3e-52) | Symbols: ATMIN7 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1727;; (*ITAG) Solyc12g017830.1.1 (e_value=3e-68) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00003909g0011.1 protein NbS00005788g0003.1 protein NbS00005072g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00043211g0007.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=6e-24) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*TAIR) AT1G01090.1 (e_value=2e-20) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc12g009400.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00002407g0005.1 protein NbS00002407g0205.1 protein NbS00002407g0208.1 protein NbS00002407g0209.1 protein NbS00020765g0009.1 protein NbS00004956g0006.1 protein NbS00004956g0007.1 protein NbS00004956g0008.1 protein NbS00048557g0002.1 protein NbS00027545g0003.1 protein ; (*ITAG) Solyc08g075520.2.1 (e_value=2e-18) genomic_reference:SL2.40ch08 gene_region:56838057-56842836 transcript_region:SL2.40ch08:56838057..56842836- functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00030111g0001.1 protein NbS00020152g0003.1 protein NbS00027209g0002.1 protein NbS00017753g0005.1 protein NbS00057236g0001.1 protein NbS00007983g0002.1 protein NbS00014037g0006.1 protein NbS00014037g0009.1 protein NbS00014037g0010.1 protein NbS00031047g0013.1 protein NbS00047070g0001.1 protein ; (*GB) gi|388511881|gb|AFK44002.1| (e_value=1e-45) unknown [Lotus japonicus];; (*SWP) sp|Q8VY91|RR6_ARATH (e_value=5e-47) 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1;; (*TAIR) AT1G64510.1 (e_value=4e-48) | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954993-23956205 REVERSE LENGTH=207;; (*ITAG) Solyc08g082690.2.1 (e_value=3e-51) genomic_reference:SL2.40ch08 gene_region:62557534-62560345 transcript_region:SL2.40ch08:62557534..62560345- go_terms:GO:0005840 functional_description:"30S ribosomal protein S6 (AHRD V1 *-*- D7DYF3_NOSA0); contains Interpro domain(s) IPR000529 Ribosomal protein S6 "; GO:0005840 NbS00001762g0004.1 protein NbS00052004g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=6e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00005467g0004.1 protein NbS00005467g0006.1 protein NbS00034945g0003.1 protein NbS00037815g0002.1 protein NbS00002265g0001.1 protein ; (*ITAG) Solyc12g009150.1.1 (e_value=1e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2461760-2464423 transcript_region:SL2.40ch12:2461760..2464423+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00007330g0003.1 protein NbS00012917g0001.1 protein ; (*GB) gi|183604839|gb|ACC64519.1| (e_value=1e-19) neuroblastoma-amplified gene [Nicotiana benthamiana];; (*ITAG) Solyc03g082680.2.1 (e_value=5e-20) genomic_reference:SL2.40ch03 gene_region:46122780-46137496 transcript_region:SL2.40ch03:46122780..46137496- functional_description:"Neuroblastoma-amplified protein-like protein (AHRD V1 *-*- D2V0U7_NAEGR); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00011312g0001.1 protein NbS00019142g0005.1 protein NbS00019142g0009.1 protein NbS00016307g0006.1 protein ; (*GB) gi|224143590|ref|XP_002325008.1| (e_value=4e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S3D1|BH068_ARATH (e_value=6e-26) Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2;; (*TAIR) AT4G29100.1 (e_value=4e-27) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:14341140-14344575 FORWARD LENGTH=407;; (*ITAG) Solyc07g020960.2.1 (e_value=7e-42) genomic_reference:SL2.40ch07 gene_region:15040089-15044408 transcript_region:SL2.40ch07:15040089..15044408+ go_terms:GO:0030528 functional_description:"BHLH transcription factor-like protein (AHRD V1 *-** Q5ZAK6_ORYSJ); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00016307g0103.1 protein NbS00016307g0211.1 protein NbS00016307g0220.1 protein NbS00023695g0004.1 protein NbS00032829g0004.1 protein NbS00013277g0004.1 protein NbS00024137g0001.1 protein ; (*GB) gi|255637385|gb|ACU19021.1| (e_value=1e-17) unknown [Glycine max];; (*TAIR) AT4G22920.1 (e_value=8e-19) | Symbols: ATNYE1, NYE1 | non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268;; (*ITAG) Solyc08g080090.2.1 (e_value=6e-20) genomic_reference:SL2.40ch08 gene_region:60579438-60582066 transcript_region:SL2.40ch08:60579438..60582066- functional_description:"Senescence-inducible chloroplast stay-green protein 2 (AHRD V1 **-- Q5EMP6_SOYBN)"; NbS00052653g0002.1 protein ; (*GB) gi|224060385|ref|XP_002300173.1| (e_value=7e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=7e-18) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT4G13640.1 (e_value=4e-20) | Symbols: UNE16 | Homeodomain-like superfamily protein | chr4:7936864-7938497 REVERSE LENGTH=292;; (*ITAG) Solyc09g091880.2.1 (e_value=4e-21) genomic_reference:SL2.40ch09 gene_region:66442582-66446588 transcript_region:SL2.40ch09:66442582..66446588+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7L484_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00004000g0001.1 protein NbS00056254g0003.1 protein NbS00056254g0004.1 protein NbS00018614g0001.1 protein NbS00018614g0005.1 protein NbS00059667g0008.1 protein ; (*GB) gi|21064945|gb|AAM29184.1| (e_value=3e-16) CDPK-like protein [Solanum tuberosum];; (*ITAG) Solyc03g026340.2.1 (e_value=3e-18) genomic_reference:SL2.40ch03 gene_region:8152768-8157216 transcript_region:SL2.40ch03:8152768..8157216- go_terms:GO:0004697 functional_description:"Calcium dependent protein kinase 17 (AHRD V1 *-** D8RHF3_SELML); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004697 NbS00015424g0006.1 protein NbS00009520g0004.1 protein ; (*GB) gi|302142922|emb|CBI20217.3| (e_value=4e-15) unnamed protein product [Vitis vinifera]; NbS00009520g0008.1 protein NbS00038537g0001.1 protein NbS00001766g0007.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=4e-42) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-43) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=1e-44) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc10g083310.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00045046g0005.1 protein NbS00017986g0005.1 protein ; (*GB) gi|330318662|gb|AEC10991.1| (e_value=1e-27) fiber protein fb11 [Camellia sinensis];; (*TAIR) AT2G46540.1 (e_value=8e-29) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110687-19111681 REVERSE LENGTH=65;; (*ITAG) Solyc01g096090.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:78955255-78958813 transcript_region:SL2.40ch01:78955255..78958813- functional_description:"Fiber protein Fb11 (AHRD V1 ***- Q8GT82_GOSBA)"; NbS00005159g0009.1 protein NbS00001211g0002.1 protein ; (*GB) gi|115315688|gb|ABI93942.1| (e_value=7e-20) syntaxin [Nicotiana benthamiana];; (*ITAG) Solyc01g056830.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:49667971-49670683 transcript_region:SL2.40ch01:49667971..49670683- functional_description:"Syntaxin (Fragment) (AHRD V1 *-*- A0F0A7_NICBE)"; NbS00023340g0005.1 protein NbS00023340g0102.1 protein NbS00023340g0103.1 protein NbS00000040g0002.1 protein NbS00043961g0004.1 protein NbS00000309g0003.1 protein NbS00030486g0004.1 protein ; (*ITAG) Solyc08g081630.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:61787281-61789385 transcript_region:SL2.40ch08:61787281..61789385+ go_terms:GO:0045449 functional_description:"WRKY transcription factor 19 (AHRD V1 *-*- C9DI08_9ROSI); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00030486g0005.1 protein NbS00041914g0003.1 protein NbS00041914g0004.1 protein NbS00053023g0001.1 protein ; (*GB) gi|359483708|ref|XP_003633005.1| (e_value=2e-19) PREDICTED: wall-associated receptor kinase-like 9-like [Vitis vinifera];; (*TAIR) AT1G21210.1 (e_value=6e-11) | Symbols: WAK4 | wall associated kinase 4 | chr1:7424653-7427041 FORWARD LENGTH=738;; (*ITAG) Solyc07g007020.2.1 (e_value=2e-63) genomic_reference:SL2.40ch07 gene_region:1807863-1812535 transcript_region:SL2.40ch07:1807863..1812535- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like protein kinase At3g21340 (AHRD V1 *-** RLK6_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00054207g0001.1 protein NbS00015188g0005.1 protein NbS00053858g0001.1 protein ; (*GB) gi|356557727|ref|XP_003547163.1| (e_value=4e-34) PREDICTED: MATE efflux family protein 1-like isoform 2 [Glycine max];; (*SWP) sp|Q9SYD6|MATE1_ARATH (e_value=5e-29) MATE efflux family protein 1 OS=Arabidopsis thaliana GN=MATE PE=2 SV=2;; (*TAIR) AT1G51340.2 (e_value=4e-30) | Symbols: | MATE efflux family protein | chr1:19032021-19034681 FORWARD LENGTH=515;; (*ITAG) Solyc11g065820.1.1 (e_value=4e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:48471797-48476125 transcript_region:SL2.40ch11:48471797..48476125- go_terms:GO:0016020 functional_description:"Mate efflux family protein (AHRD V1 **-- D7KHQ9_ARALY); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0016020 NbS00004481g0003.1 protein NbS00038165g0003.1 protein NbS00025974g0005.1 protein NbS00017406g0008.1 protein NbS00017406g0009.1 protein NbS00031846g0012.1 protein NbS00031846g0005.1 protein NbS00031846g0007.1 protein NbS00025243g0002.1 protein NbS00021788g0006.1 protein ; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=6e-53) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q0JKD0|GLT1_ORYSJ (e_value=7e-45) Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0681900 PE=2 SV=1;; (*TAIR) AT5G53460.3 (e_value=8e-42) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=6e-57) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00008083g0005.1 protein NbS00015497g0105.1 protein NbS00018250g0003.1 protein NbS00013406g0002.1 protein NbS00040931g0006.1 protein NbS00040931g0008.1 protein NbS00040931g0010.1 protein NbS00006590g0005.1 protein NbS00034594g0005.1 protein NbS00034594g0006.1 protein NbS00009172g0004.1 protein NbS00009172g0006.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-21) hypothetical protein [Nicotiana tabacum]; NbS00004769g0002.1 protein NbS00004769g0003.1 protein NbS00003325g0001.1 protein ; (*GB) gi|147816091|emb|CAN72890.1| (e_value=5e-25) hypothetical protein VITISV_022310 [Vitis vinifera];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=4e-18) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=3e-19) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc09g005160.1.1 (e_value=5e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:151592-155869 transcript_region:SL2.40ch09:151592..155869+ go_terms:GO:0043008 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-*- B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0043008 NbS00011376g0004.1 protein NbS00011376g0005.1 protein NbS00061060g0002.1 protein NbS00025777g0003.1 protein ; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=6e-18) MADS-box protein 15 [Petunia x hybrida];; (*ITAG) Solyc05g015720.1.1 (e_value=1e-17) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch05 gene_region:11820296-11823497 transcript_region:SL2.40ch05:11820296..11823497- go_terms:GO:0003700 functional_description:"MADS box transcription factor-like protein (AHRD V1 **** Q9FJQ7_ARATH); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700 NbS00009017g0010.1 protein NbS00009709g0005.1 protein NbS00009709g0006.1 protein NbS00009709g0007.1 protein NbS00018582g0005.1 protein NbS00030553g0005.1 protein NbS00030553g0007.1 protein NbS00037107g0004.1 protein ; (*GB) gi|225454188|ref|XP_002272416.1| (e_value=7e-14) PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera];; (*SWP) sp|Q9FHD7|Y5126_ARATH (e_value=2e-14) Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1;; (*TAIR) AT5G41260.1 (e_value=1e-15) | Symbols: | Protein kinase protein with tetratricopeptide repeat domain | chr5:16503997-16506970 FORWARD LENGTH=487;; (*ITAG) Solyc09g011750.2.1 (e_value=1e-15) genomic_reference:SL2.40ch09 gene_region:5045721-5050019 transcript_region:SL2.40ch09:5045721..5050019+ go_terms:GO:0006468,GO:0005488 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbC23732021g0002.1 protein ; (*GB) gi|359482368|ref|XP_003632762.1| (e_value=1e-47) PREDICTED: pre-mRNA-processing-splicing factor 8-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q6P2Q9|PRP8_HUMAN (e_value=2e-38) Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=4e-49) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=2e-50) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00014848g0003.1 protein NbS00014848g0109.1 protein NbC23921619g0001.1 protein ; (*GB) gi|356520854|ref|XP_003529075.1| (e_value=6e-36) PREDICTED: probable protein arginine N-methyltransferase 1-like [Glycine max];; (*SWP) sp|Q9SU94|ANM11_ARATH (e_value=4e-34) Protein arginine N-methyltransferase 1.1 OS=Arabidopsis thaliana GN=PRMT11 PE=1 SV=1;; (*TAIR) AT4G29510.1 (e_value=3e-35) | Symbols: ATPRMT11, PRMT11, ATPRMT1B, PRMT1B | arginine methyltransferase 11 | chr4:14491739-14493752 FORWARD LENGTH=390;; (*ITAG) Solyc12g008760.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2116904-2120908 transcript_region:SL2.40ch12:2116904..2120908+ functional_description:"Protein arginine N-methyltransferase 1 (AHRD V1 ***- B6TIG8_MAIZE)"; NbS00037687g0005.1 protein NbS00037687g0006.1 protein NbS00039669g0001.1 protein NbS00004226g0004.1 protein ; (*GB) gi|94466657|emb|CAJ44457.1| (e_value=4e-18) ALY protein [Nicotiana benthamiana];; (*ITAG) Solyc10g086400.1.1 (e_value=3e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:64555371-64559752 transcript_region:SL2.40ch10:64555371..64559752+ go_terms:GO:0003676,GO:0000166 functional_description:"THO complex subunit 4 (AHRD V1 **-- B6TMR7_MAIZE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00016965g0002.1 protein ; (*ITAG) Solyc04g082790.2.1 (e_value=4e-16) genomic_reference:SL2.40ch04 gene_region:63927360-63932321 transcript_region:SL2.40ch04:63927360..63932321- go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00016965g0005.1 protein NbS00001119g0003.1 protein NbS00055975g0001.1 protein ; (*GB) gi|321437419|gb|ADW83720.1| (e_value=2e-28) ribosomal protein S4 [Musa acuminata AAA Group];; (*SWP) sp|P29344|RR1_SPIOL (e_value=3e-28) 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1;; (*TAIR) AT5G30510.1 (e_value=6e-28) | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416;; (*ITAG) Solyc01g057830.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:56934925-56939761 transcript_region:SL2.40ch01:56934925..56939761+ go_terms:GO:0005840,GO:0003723 functional_description:"30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "; GO:0005840,GO:0003723 NbS00017828g0002.1 protein NbS00017828g0003.1 protein NbS00017828g0005.1 protein NbS00049756g0003.1 protein NbS00026375g0004.1 protein NbS00033260g0003.1 protein ; (*GB) gi|363814559|ref|NP_001242755.1| (e_value=9e-30) uncharacterized protein LOC100797401 precursor [Glycine max];; (*TAIR) AT3G52720.2 (e_value=8e-31) | Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhydrase 1 | chr3:19539617-19541116 REVERSE LENGTH=230;; (*ITAG) Solyc09g009830.2.1 (e_value=6e-57) genomic_reference:SL2.40ch09 gene_region:3327427-3330192 transcript_region:SL2.40ch09:3327427..3330192+ go_terms:GO:0004089 functional_description:"Carbonic anhydrase (Carbonate dehydratase) (AHRD V1 **** C1DTU5_SULAA); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0004089 NbS00031520g0005.1 protein NbS00037635g0002.1 protein NbS00005930g0004.1 protein NbS00005930g0005.1 protein NbS00005930g0006.1 protein NbC24785424g0001.1 protein ; (*GB) gi|359480018|ref|XP_002273034.2| (e_value=4e-50) PREDICTED: structural maintenance of chromosomes protein 1A-like [Vitis vinifera];; (*SWP) sp|O94383|SMC1_SCHPO (e_value=5e-26) Structural maintenance of chromosomes protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psm1 PE=1 SV=1;; (*TAIR) AT3G54670.1 (e_value=4e-45) | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of chromosomes (SMC) family protein | chr3:20235818-20243701 FORWARD LENGTH=1238;; (*ITAG) Solyc06g083870.2.1 (e_value=4e-58) genomic_reference:SL2.40ch06 gene_region:45456214-45469857 transcript_region:SL2.40ch06:45456214..45469857+ go_terms:GO:0016887,GO:0005694 functional_description:"Structural maintenance of chromosomes 1 protein (AHRD V1 **-- Q6Q1P4_ARATH); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0016887,GO:0005694 NbS00031211g0004.1 protein NbS00031211g0005.1 protein NbS00005983g0004.1 protein NbS00005983g0006.1 protein NbS00006643g0005.1 protein NbS00017630g0006.1 protein ; (*GB) gi|255634312|gb|ACU17520.1| (e_value=3e-52) unknown [Glycine max]; NbS00058907g0004.1 protein NbS00026379g0003.1 protein NbS00043874g0003.1 protein NbS00007285g0007.1 protein ; (*GB) gi|255541236|ref|XP_002511682.1| (e_value=2e-56) beta-tubulin cofactor d, putative [Ricinus communis];; (*TAIR) AT3G60740.1 (e_value=3e-44) | Symbols: TTN1, EMB133, TFC D, CHO | ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254;; (*ITAG) Solyc01g091080.2.1 (e_value=3e-73) genomic_reference:SL2.40ch01 gene_region:76559722-76569026 transcript_region:SL2.40ch01:76559722..76569026- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone D (AHRD V1 **** C0H9S8_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00025145g0003.1 protein NbS00019601g0011.1 protein ; (*GB) gi|359482307|ref|XP_002277445.2| (e_value=1e-47) PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera];; (*SWP) sp|Q9FMY5|U2AFB_ARATH (e_value=1e-47) Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1;; (*TAIR) AT5G42820.1 (e_value=1e-48) | Symbols: ATU2AF35B, U2AF35B | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr5:17170445-17171296 REVERSE LENGTH=283;; (*ITAG) Solyc11g066830.1.1 (e_value=9e-52) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49725870-49729591 transcript_region:SL2.40ch11:49725870..49729591+ go_terms:GO:0003676,GO:0005634,GO:0008270,GO:0000166 functional_description:"Splicing factor U2af subunit (AHRD V1 ***- B6T7D3_MAIZE); contains Interpro domain(s) IPR009145 U2 auxiliary factor small subunit "; GO:0003676,GO:0005634,GO:0008270,GO:0000166 NbS00019601g0007.1 protein NbS00010879g0015.1 protein NbS00010879g0017.1 protein NbS00010879g0010.1 protein NbS00015620g0012.1 protein NbS00025199g0001.1 protein ; (*GB) gi|356460901|ref|NP_001239041.1| (e_value=2e-27) sesquiterpene synthase [Solanum lycopersicum];; (*SWP) sp|Q6Q3H2|TPSVS_VITVI (e_value=1e-15) Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1;; (*ITAG) Solyc07g052140.2.1 (e_value=1e-37) genomic_reference:SL2.40ch07 gene_region:57994754-57995894 transcript_region:SL2.40ch07:57994754..57995894- go_terms:GO:0016829 functional_description:"(-)-germacrene D synthase (AHRD V1 ***- Q64K29_9ROSI); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0016829 NbS00004186g0001.1 protein NbS00059518g0002.1 protein NbS00059518g0003.1 protein NbS00024508g0001.1 protein NbS00037048g0003.1 protein NbS00000183g0009.1 protein ; (*GB) gi|225463924|ref|XP_002267287.1| (e_value=2e-33) PREDICTED: tyrosine-protein phosphatase non-receptor type 20-like [Vitis vinifera];; (*SWP) sp|O82656|PTP1_ARATH (e_value=3e-33) Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1 PE=1 SV=1;; (*TAIR) AT1G71860.3 (e_value=2e-34) | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase 1 | chr1:27026866-27028675 FORWARD LENGTH=340;; (*ITAG) Solyc06g065480.2.1 (e_value=7e-50) genomic_reference:SL2.40ch06 gene_region:37262700-37270075 transcript_region:SL2.40ch06:37262700..37270075- go_terms:GO:0004726 functional_description:"Protein tyrosine phosphatase non-receptor type 6 (AHRD V1 **** A5D980_BOVIN); contains Interpro domain(s) IPR000242 Protein-tyrosine phosphatase, receptor/non-receptor type "; GO:0004726 NbS00020305g0005.1 protein NbS00020305g0006.1 protein NbS00055508g0004.1 protein NbS00050592g0001.1 protein ; (*GB) gi|350534688|ref|NP_001233898.1| (e_value=5e-25) nonclathrin coat protein zeta1-COP [Solanum lycopersicum];; (*SWP) sp|Q940S5|COPZ1_ARATH (e_value=2e-24) Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1;; (*TAIR) AT1G60970.1 (e_value=2e-25) | Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177;; (*ITAG) Solyc03g121800.2.1 (e_value=1e-27) genomic_reference:SL2.40ch03 gene_region:63900340-63903757 transcript_region:SL2.40ch03:63900340..63903757+ go_terms:GO:0030117,GO:0006810 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- B6UH71_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0030117,GO:0006810 NbS00023753g0106.1 protein NbS00017597g0015.1 protein ; (*GB) gi|28200788|emb|CAD45375.1| (e_value=5e-84) potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigenum];; (*SWP) sp|Q9T041|MAPT_ARATH (e_value=3e-61) Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2;; (*TAIR) AT4G27060.1 (e_value=2e-62) | Symbols: TOR1, SPR2, CN | ARM repeat superfamily protein | chr4:13581581-13585070 REVERSE LENGTH=864;; (*ITAG) Solyc10g006350.2.1 (e_value=1e-89) genomic_reference:SL2.40ch10 gene_region:974968-983342 transcript_region:SL2.40ch10:974968..983342- go_terms:GO:0008017 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--* B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00017597g0019.1 protein NbS00012250g0001.1 protein ; (*GB) gi|11466011|ref|NP_054553.1| (e_value=4e-34) hypothetical protein NitaCp079 [Nicotiana tabacum];; (*SWP) sp|P12222|YCF1_TOBAC (e_value=9e-32) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2;; (*ITAG) Solyc11g021310.1.1 (e_value=4e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13398603-13399852 transcript_region:SL2.40ch11:13398603..13399852- functional_description:"Hypothetical chloroplast RF1 (AHRD V1 ***- C3UP30_9MAGN); contains Interpro domain(s) IPR008896 Ycf1 "; NbS00009429g0006.1 protein NbS00039999g0007.1 protein NbS00039999g0008.1 protein NbS00008581g0003.1 protein NbS00008581g0006.1 protein NbS00010327g0012.1 protein NbS00010327g0021.1 protein NbS00010327g0022.1 protein ; (*GB) gi|225463408|ref|XP_002274043.1| (e_value=2e-21) PREDICTED: programmed cell death protein 5-like [Vitis vinifera];; (*TAIR) AT1G29850.1 (e_value=8e-23) | Symbols: | double-stranded DNA-binding family protein | chr1:10447866-10449630 FORWARD LENGTH=129;; (*ITAG) Solyc02g071150.2.1 (e_value=2e-28) genomic_reference:SL2.40ch02 gene_region:35217704-35225700 transcript_region:SL2.40ch02:35217704..35225700- go_terms:GO:0005515,GO:0003690 functional_description:"DNA-binding protein (AHRD V1 **** B7R4T4_9EURY); contains Interpro domain(s) IPR002836 DNA-binding TFAR19-related protein "; GO:0005515,GO:0003690 NbC25491193g0002.1 protein ; (*ITAG) Solyc12g099010.1.1 (e_value=9e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64662179-64670542 transcript_region:SL2.40ch12:64662179..64670542- go_terms:GO:0006468 functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A2EN39_TRIVA); contains Interpro domain(s) IPR000409 Beige/BEACH "; GO:0006468 NbS00001738g0007.1 protein NbS00006194g0004.1 protein NbS00013893g0002.1 protein NbS00013893g0007.1 protein ; (*GB) gi|122894003|ref|YP_001004199.1| (e_value=4e-13) cytochrome f [Ranunculus macranthus];; (*SWP) sp|Q33C20|CYF_NICTO (e_value=3e-14) Apocytochrome f OS=Nicotiana tomentosiformis GN=petA PE=3 SV=1;; (*ITAG) ATCG00540.1 (e_value=2e-13) | Symbols: PETA | photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320;; (*ITAG) Solyc01g007380.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1859332-1860294 transcript_region:SL2.40ch01:1859332..1860294+ go_terms:GO:0031361 functional_description:"Apocytochrome f (AHRD V1 ***- D3WBH0_9AQUA); contains Interpro domain(s) IPR002325 Cytochrome f "; GO:0031361 NbS00027399g0001.1 protein NbS00010334g0001.1 protein ; (*ITAG) Solyc08g076040.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:57270791-57273048 transcript_region:SL2.40ch08:57270791..57273048- functional_description:"cDNA clone J033107D23 full insert sequence (AHRD V1 *-*- B7ETL1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; NbS00006287g0002.1 protein ; (*GB) gi|54606686|dbj|BAD66709.1| (e_value=5e-18) orf177 [Beta vulgaris subsp. vulgaris]; NbS00006287g0003.1 protein NbS00006287g0004.1 protein ; (*ITAG) Solyc00g012310.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10454496-10455623 transcript_region:SL2.40ch00:10454496..10455623- go_terms:GO:0006278 functional_description:"Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) (AHRD V1 **-- PO21_NASVI); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; GO:0006278 NbS00046650g0011.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-38) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00004998g0003.1 protein ; (*GB) gi|227343509|gb|ACP27607.1| (e_value=6e-61) FVE [Dimocarpus longan];; (*SWP) sp|Q9SU78|MSI5_ARATH (e_value=7e-58) WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2;; (*TAIR) AT4G29730.1 (e_value=6e-59) | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly factor group C5 | chr4:14559255-14562522 REVERSE LENGTH=487;; (*ITAG) Solyc03g121580.2.1 (e_value=7e-74) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00011547g0005.1 protein NbS00024368g0003.1 protein NbS00042377g0003.1 protein NbS00036762g0002.1 protein NbS00012427g0003.1 protein NbS00024779g0002.1 protein NbS00032575g0006.1 protein NbS00022941g0008.1 protein NbS00006073g0008.1 protein NbS00027848g0002.1 protein NbS00005589g0111.1 protein NbS00005589g0108.1 protein NbS00051494g0002.1 protein NbS00012536g0004.1 protein ; (*TAIR) AT5G41270.1 (e_value=4e-15) | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P, Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16507797-16508813 FORWARD LENGTH=258;; (*ITAG) Solyc04g007420.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:1095016-1097267 transcript_region:SL2.40ch04:1095016..1097267+ functional_description:"Genomic DNA chromosome 5 TAC clone K1O13 (AHRD V1 *-*- Q9FHD6_ARATH); contains Interpro domain(s) IPR007175 RNAse P, Rpr2/Rpp21 subunit "; NbS00012536g0006.1 protein ; (*ITAG) Solyc04g007420.2.1 (e_value=5e-25) genomic_reference:SL2.40ch04 gene_region:1095016-1097267 transcript_region:SL2.40ch04:1095016..1097267+ functional_description:"Genomic DNA chromosome 5 TAC clone K1O13 (AHRD V1 *-*- Q9FHD6_ARATH); contains Interpro domain(s) IPR007175 RNAse P, Rpr2/Rpp21 subunit "; NbS00043819g0005.1 protein ; (*GB) gi|224132094|ref|XP_002321254.1| (e_value=6e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08840.1 (e_value=1e-29) | Symbols: emb2411 | DNA replication helicase, putative | chr1:2829579-2838369 REVERSE LENGTH=1296;; (*ITAG) Solyc01g088380.1.1 (e_value=1e-46) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74904201-74922866 transcript_region:SL2.40ch01:74904201..74922866- go_terms:GO:0017108 functional_description:"DNA helicase (AHRD V1 ***- A6ZT72_YEAS7); contains Interpro domain(s) IPR014808 DNA replication factor Dna2 "; GO:0017108 NbS00017875g0007.1 protein ; (*ITAG) Solyc09g005450.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:322841-323726 transcript_region:SL2.40ch09:322841..323726- functional_description:"Unknown Protein (AHRD V1)"; NbS00012416g0003.1 protein NbS00026609g0002.1 protein NbS00026609g0003.1 protein NbS00004754g0009.1 protein NbS00039744g0005.1 protein NbS00011355g0106.1 protein NbS00011355g0107.1 protein NbS00024391g0006.1 protein NbS00024391g0009.1 protein NbS00043864g0005.1 protein NbS00011077g0003.1 protein NbS00011077g0004.1 protein NbS00011077g0006.1 protein ; (*GB) gi|75288399|sp|Q5YLB4.1|GYRB_NICBE (e_value=4e-52) RecName: Full=DNA gyrase subunit B, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB4|GYRB_NICBE (e_value=1e-53) DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1;; (*ITAG) Solyc12g021230.1.1 (e_value=6e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14910466-14933796 transcript_region:SL2.40ch12:14910466..14933796+ go_terms:GO:0006265,GO:0005524,GO:0005694 functional_description:"DNA gyrase subunit B (AHRD V1 ***- Q8YLN3_ANASP); contains Interpro domain(s) IPR011557 DNA gyrase, subunit B "; GO:0006265,GO:0005524,GO:0005694 NbS00005783g0004.1 protein NbS00032622g0005.1 protein NbS00010100g0004.1 protein NbS00004434g0007.1 protein NbS00004434g0008.1 protein NbS00009939g0003.1 protein NbS00041990g0002.1 protein NbS00003123g0005.1 protein ; (*ITAG) Solyc04g017610.2.1 (e_value=1e-16) genomic_reference:SL2.40ch04 gene_region:7569647-7585025 transcript_region:SL2.40ch04:7569647..7585025+ functional_description:"F-box domain containing protein expressed (AHRD V1 ***- Q2R211_ORYSJ); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00017182g0002.1 protein NbS00017182g0114.1 protein NbS00017178g0002.1 protein NbS00032834g0005.1 protein NbS00030073g0001.1 protein NbS00009909g0005.1 protein NbS00009909g0008.1 protein NbS00010979g0004.1 protein NbS00014688g0001.1 protein ; (*ITAG) Solyc00g027120.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12386738-12387709 transcript_region:SL2.40ch00:12386738..12387709+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SI31_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00059430g0001.1 protein ; (*GB) gi|357460847|ref|XP_003600705.1| (e_value=1e-16) Condensin complex subunit [Medicago truncatula];; (*TAIR) AT5G37630.1 (e_value=2e-15) | Symbols: EMB2656 | ARM repeat superfamily protein | chr5:14947407-14952546 FORWARD LENGTH=1051;; (*ITAG) Solyc11g011370.1.1 (e_value=3e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4411251-4419803 transcript_region:SL2.40ch11:4411251..4419803- go_terms:GO:0005488 functional_description:"Condensin complex subunit 3 (AHRD V1 *-*- C0H9G7_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00011687g0008.1 protein NbS00011687g0009.1 protein NbS00000599g0009.1 protein NbS00059408g0003.1 protein NbS00015127g0003.1 protein NbS00015127g0004.1 protein NbS00015127g0005.1 protein NbS00029601g0005.1 protein NbS00007946g0003.1 protein NbS00007946g0004.1 protein ; (*ITAG) Solyc12g043140.1.1 (e_value=4e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:44266393-44269129 transcript_region:SL2.40ch12:44266393..44269129- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00017483g0003.1 protein NbS00005227g0007.1 protein NbS00030188g0009.1 protein NbS00011773g0002.1 protein NbS00024887g0002.1 protein NbS00004380g0005.1 protein NbS00004380g0006.1 protein ; (*GB) gi|225441955|ref|XP_002263826.1| (e_value=2e-23) PREDICTED: 26S protease regulatory subunit 7 [Vitis vinifera];; (*SWP) sp|Q9SSB5|PRS7A_ARATH (e_value=8e-25) 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1;; (*TAIR) AT1G53750.1 (e_value=6e-26) | Symbols: RPT1A | regulatory particle triple-A 1A | chr1:20065921-20068324 REVERSE LENGTH=426;; (*ITAG) Solyc03g123730.2.1 (e_value=7e-26) genomic_reference:SL2.40ch03 gene_region:64522532-64528154 transcript_region:SL2.40ch03:64522532..64528154+ go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 ***- B5DG36_SALSA); contains Interpro domain(s) IPR005937 26S proteasome subunit P45 "; GO:0042623 NbS00017240g0002.1 protein ; (*GB) gi|297829326|ref|XP_002882545.1| (e_value=2e-31) kelch repeat-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q93XW5|NSP5_ARATH (e_value=8e-22) Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1;; (*TAIR) AT3G07720.1 (e_value=5e-34) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329;; (*ITAG) Solyc05g024410.2.1 (e_value=1e-42) genomic_reference:SL2.40ch05 gene_region:31650811-31654017 transcript_region:SL2.40ch05:31650811..31654017+ functional_description:"Kelch-like protein 9 (AHRD V1 ***- KLHL9_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00007252g0006.1 protein NbS00023463g0003.1 protein NbS00022011g0002.1 protein NbS00022011g0003.1 protein NbS00022011g0004.1 protein ; (*GB) gi|225459219|ref|XP_002284058.1| (e_value=1e-23) PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera];; (*TAIR) AT1G22460.1 (e_value=1e-18) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=2e-25) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00056844g0002.1 protein NbS00006016g0001.1 protein ; (*GB) gi|147858322|emb|CAN81424.1| (e_value=2e-18) hypothetical protein VITISV_035944 [Vitis vinifera];; (*ITAG) Solyc02g090400.2.1 (e_value=2e-34) genomic_reference:SL2.40ch02 gene_region:46542531-46544827 transcript_region:SL2.40ch02:46542531..46544827+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (AHRD V1 **-* D7LQI3_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00021129g0005.1 protein NbS00021129g0010.1 protein NbS00055209g0003.1 protein NbS00006809g0007.1 protein NbS00019220g0108.1 protein NbS00019220g0109.1 protein NbS00001266g0003.1 protein NbS00001266g0006.1 protein NbS00010747g0006.1 protein ; (*ITAG) Solyc05g018090.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:20013530-20016331 transcript_region:SL2.40ch05:20013530..20016331- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_PONAB); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00010747g0007.1 protein NbS00041539g0003.1 protein NbS00017890g0004.1 protein NbS00021924g0004.1 protein NbS00014934g0002.1 protein NbS00041760g0003.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=1e-19) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00045717g0006.1 protein NbS00020533g0004.1 protein NbS00000677g0005.1 protein NbS00005005g0009.1 protein NbS00012704g0006.1 protein NbS00019379g0007.1 protein NbS00030504g0003.1 protein ; (*GB) gi|359478571|ref|XP_002279903.2| (e_value=5e-94) PREDICTED: helicase SKI2W-like [Vitis vinifera];; (*TAIR) AT3G46960.1 (e_value=2e-89) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr3:17291004-17298067 REVERSE LENGTH=1347;; (*ITAG) Solyc06g005990.2.1 (e_value=7e-142) genomic_reference:SL2.40ch06 gene_region:983484-1006865 transcript_region:SL2.40ch06:983484..1006865+ go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B3LQ61_YEAS1); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00030504g0004.1 protein NbS00043358g0003.1 protein NbS00043358g0004.1 protein ; (*GB) gi|388490722|gb|AFK33427.1| (e_value=1e-11) unknown [Lotus japonicus];; (*ITAG) Solyc01g109130.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:87935341-87941166 transcript_region:SL2.40ch01:87935341..87941166+ go_terms:GO:0005515 functional_description:"Proteasome assembly chaperone 2 (AHRD V1 ***- C1BZ15_ESOLU); contains Interpro domain(s) IPR016562 20S proteasome assembly chaperone 2, subgroup "; GO:0005515 NbS00043358g0007.1 protein NbS00013664g0001.1 protein NbS00013664g0109.1 protein NbS00007795g0005.1 protein NbS00050031g0002.1 protein NbS00002256g0003.1 protein NbS00037973g0006.1 protein NbS00014222g0001.1 protein NbS00013501g0004.1 protein NbS00013501g0005.1 protein NbS00000370g0006.1 protein ; (*GB) gi|357436017|ref|XP_003588284.1| (e_value=3e-21) hypothetical protein MTR_1g005250 [Medicago truncatula]; NbS00000370g0110.1 protein NbS00000370g0210.1 protein NbS00033749g0006.1 protein NbS00016784g0003.1 protein ; (*GB) gi|317106622|dbj|BAJ53129.1| (e_value=9e-21) JHL07K02.19 [Jatropha curcas];; (*TAIR) AT5G50970.1 (e_value=5e-19) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512;; (*ITAG) Solyc12g042200.1.1 (e_value=5e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42688645-42702623 transcript_region:SL2.40ch12:42688645..42702623+ functional_description:"U5 small nuclear ribonucleoprotein protein (AHRD V1 *--- C1BSR6_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00001896g0014.1 protein NbS00055701g0005.1 protein NbS00055701g0008.1 protein ; (*GB) gi|224090097|ref|XP_002308937.1| (e_value=5e-18) ABC transporter family, cholesterol/phospholipid flippase [Populus trichocarpa];; (*SWP) sp|Q84M24|AB1A_ARATH (e_value=9e-15) ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2;; (*TAIR) AT2G41700.1 (e_value=7e-16) | Symbols: ABCA1, AtABCA1 | ATP-binding cassette A1 | chr2:17383239-17396110 REVERSE LENGTH=1882;; (*ITAG) Solyc04g015970.2.1 (e_value=5e-20) genomic_reference:SL2.40ch04 gene_region:6513493-6539312 transcript_region:SL2.40ch04:6513493..6539312+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette 1 (AHRD V1 *-*- Q80ZB2_RAT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00032698g0004.1 protein NbS00038536g0005.1 protein NbS00038536g0006.1 protein NbS00042179g0002.1 protein ; (*GB) gi|255589720|ref|XP_002535064.1| (e_value=4e-30) conserved hypothetical protein [Ricinus communis]; NbS00032476g0003.1 protein ; (*ITAG) Solyc04g051410.2.1 (e_value=1e-18) genomic_reference:SL2.40ch04 gene_region:49683384-49690786 transcript_region:SL2.40ch04:49683384..49690786+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** A5B229_VITVI); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00008546g0001.1 protein NbS00019569g0004.1 protein NbS00019569g0006.1 protein ; (*GB) gi|56694211|gb|AAW22873.1| (e_value=1e-11) putative polyprotein [Solanum lycopersicum];; (*ITAG) Solyc04g011970.1.1 (e_value=8e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4325923-4329809 transcript_region:SL2.40ch04:4325923..4329809+ go_terms:GO:0003676,GO:0015074 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY4_MEDTR); contains Interpro domain(s) IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase "; GO:0003676,GO:0015074 NbS00058057g0003.1 protein ; (*SWP) sp|A4QLS9|PSBC_NASOF (e_value=1e-12) Photosystem II CP43 chlorophyll apoprotein OS=Nasturtium officinale GN=psbC PE=3 SV=1;; (*ITAG) ATCG00280.1 (e_value=1e-13) | Symbols: PSBC | photosystem II reaction center protein C | chrC:33720-35141 FORWARD LENGTH=473;; (*ITAG) Solyc12g038080.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:34043648-34043872 transcript_region:SL2.40ch12:34043648..34043872+ go_terms:GO:0016020 functional_description:"Photosystem II CP43 chlorophyll apoprotein (AHRD V1 ***- D1L8N4_BRANA); contains Interpro domain(s) IPR000932 Photosystem antenna protein-like "; GO:0016020 NbS00010795g0005.1 protein NbS00010518g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00039157g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-22) hypothetical protein [Nicotiana tabacum]; NbS00032482g0004.1 protein NbS00021455g0001.1 protein NbC24488099g0001.1 protein ; (*ITAG) Solyc11g011390.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4461423-4472090 transcript_region:SL2.40ch11:4461423..4472090+ go_terms:GO:0005488 functional_description:"TPR repeat Kinesin light chain Kinesin light chain (AHRD V1 *--- Q4C9Q1_CROWT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00059532g0002.1 protein NbS00026811g0004.1 protein NbS00043361g0005.1 protein ; (*ITAG) Solyc01g014100.2.1 (e_value=9e-18) genomic_reference:SL2.40ch01 gene_region:11575508-11576183 transcript_region:SL2.40ch01:11575508..11576183+ functional_description:"Unknown Protein (AHRD V1)"; NbS00043361g0008.1 protein ; (*GB) gi|297746379|emb|CBI16435.3| (e_value=4e-63) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C5V6|TOP6B_ARATH (e_value=3e-60) DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1;; (*TAIR) AT3G20780.1 (e_value=2e-61) | Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topoisomerase 6 subunit B | chr3:7264025-7268498 REVERSE LENGTH=670;; (*ITAG) Solyc01g014490.2.1 (e_value=3e-66) genomic_reference:SL2.40ch01 gene_region:13976404-13992385 transcript_region:SL2.40ch01:13976404..13992385- go_terms:GO:0042802 functional_description:"Type II DNA topoisomerase VI subunit B (AHRD V1 ***- C1MLZ8_MICPS); contains Interpro domain(s) IPR015320 DNA topoisomerase VI, subunit B, transducer "; GO:0042802 NbS00000925g0002.1 protein NbS00004229g0009.1 protein ; (*GB) gi|224131316|ref|XP_002321054.1| (e_value=6e-39) predicted protein [Populus trichocarpa];; (*TAIR) AT4G02990.1 (e_value=4e-39) | Symbols: | Mitochondrial transcription termination factor family protein | chr4:1322158-1323783 FORWARD LENGTH=541;; (*ITAG) Solyc04g005630.2.1 (e_value=2e-42) genomic_reference:SL2.40ch04 gene_region:411094-414033 transcript_region:SL2.40ch04:411094..414033- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M3B1_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00006118g0007.1 protein NbC23749293g0001.1 protein ; (*GB) gi|225445859|ref|XP_002278464.1| (e_value=1e-23) PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Vitis vinifera];; (*SWP) sp|Q9FXH6|CNGC8_ARATH (e_value=1e-23) Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2;; (*TAIR) AT1G19780.1 (e_value=1e-24) | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated channel 8 | chr1:6833885-6836578 REVERSE LENGTH=753;; (*ITAG) Solyc07g005590.2.1 (e_value=3e-27) genomic_reference:SL2.40ch07 gene_region:481459-487527 transcript_region:SL2.40ch07:481459..487527+ go_terms:GO:0008395 functional_description:"Cyclic nucleotide gated channel (AHRD V1 ***- A9CRE4_MALDO); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0008395 NbS00027336g0007.1 protein NbS00013345g0005.1 protein NbC23990909g0001.1 protein ; (*GB) gi|270358336|gb|ACZ81391.1| (e_value=8e-19) powdery mildew resistance locus O protein [Prunus armeniaca];; (*TAIR) AT5G65970.1 (e_value=2e-11) | Symbols: MLO10, ATMLO10 | Seven transmembrane MLO family protein | chr5:26387509-26390407 REVERSE LENGTH=569;; (*ITAG) Solyc02g082430.2.1 (e_value=1e-34) genomic_reference:SL2.40ch02 gene_region:40694608-40700995 transcript_region:SL2.40ch02:40694608..40700995- go_terms:GO:0016021 functional_description:"MLO-like protein 3 (AHRD V1 ***- C6EWE6_VITVI); contains Interpro domain(s) IPR004326 Mlo-related protein "; GO:0016021 NbS00006360g0003.1 protein NbS00037566g0010.1 protein NbS00001999g0009.1 protein NbS00003915g0002.1 protein NbS00021765g0005.1 protein ; (*GB) gi|363808308|ref|NP_001242501.1| (e_value=1e-17) uncharacterized protein LOC100811930 [Glycine max];; (*SWP) sp|Q9LPS9|PIRL1_ARATH (e_value=1e-15) Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1;; (*TAIR) AT1G50590.1 (e_value=9e-17) | Symbols: | RmlC-like cupins superfamily protein | chr1:18732378-18734053 REVERSE LENGTH=310;; (*ITAG) Solyc07g065160.2.1 (e_value=8e-24) genomic_reference:SL2.40ch07 gene_region:64268219-64270944 transcript_region:SL2.40ch07:64268219..64270944- go_terms:GO:0005516,GO:0003712 functional_description:"Pirin (AHRD V1 ***- D7RJ70_CARPA); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00005254g0002.1 protein NbS00013016g0014.1 protein NbS00013016g0007.1 protein ; (*ITAG) Solyc00g230060.1.1 (e_value=4e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19613244-19614249 transcript_region:SL2.40ch00:19613244..19614249+ go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00013211g0004.1 protein NbS00042068g0002.1 protein ; (*GB) gi|255552023|ref|XP_002517056.1| (e_value=6e-17) cation-transporting atpase plant, putative [Ricinus communis];; (*SWP) sp|Q9LIK7|ACA13_ARATH (e_value=9e-14) Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=2 SV=1;; (*TAIR) AT3G22910.1 (e_value=7e-15) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:8116335-8119388 REVERSE LENGTH=1017;; (*ITAG) Solyc09g082870.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:63946249-63949485 transcript_region:SL2.40ch09:63946249..63949485- go_terms:GO:0005388 functional_description:"Calcium-transporting ATPase 1 (AHRD V1 **** Q7XBH9_CERRI); contains Interpro domain(s) IPR006408 ATPase, P-type, calcium-transporting, PMCA-type "; GO:0005388 NbS00044598g0012.1 protein NbS00007327g0002.1 protein NbS00014430g0005.1 protein NbS00007712g0004.1 protein NbS00028397g0104.1 protein NbS00028397g0106.1 protein NbS00003688g0004.1 protein NbS00047615g0001.1 protein ; (*GB) gi|224126411|ref|XP_002329547.1| (e_value=1e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|O23553|BAM3_ARATH (e_value=1e-32) Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3;; (*TAIR) AT4G17090.1 (e_value=1e-33) | Symbols: CT-BMY, BAM3, BMY8 | chloroplast beta-amylase | chr4:9605266-9607250 REVERSE LENGTH=548;; (*ITAG) Solyc08g007130.2.1 (e_value=2e-41) genomic_reference:SL2.40ch08 gene_region:1700691-1704229 transcript_region:SL2.40ch08:1700691..1704229+ go_terms:GO:0016161 functional_description:"Beta-amylase 8 (AHRD V1 **** D7MC27_ARALY); contains Interpro domain(s) IPR001554 Glycoside hydrolase, family 14 "; GO:0016161 NbS00000743g0008.1 protein NbS00005673g0006.1 protein NbS00021293g0003.1 protein NbS00021293g0004.1 protein NbS00037772g0005.1 protein NbS00037772g0007.1 protein NbS00012429g0005.1 protein ; (*GB) gi|118022|sp|P00054.1|CYC_SESIN (e_value=2e-39) RecName: Full=Cytochrome c;; (*SWP) sp|P00054|CYC_SESIN (e_value=7e-41) Cytochrome c OS=Sesamum indicum PE=1 SV=1;; (*TAIR) AT4G10040.1 (e_value=1e-38) | Symbols: CYTC-2 | cytochrome c-2 | chr4:6277083-6278281 FORWARD LENGTH=112;; (*ITAG) Solyc11g042420.1.1 (e_value=4e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:31786354-31788004 transcript_region:SL2.40ch11:31786354..31788004+ go_terms:GO:0020037 functional_description:"Cytochrome c (AHRD V1 ***- B6SKR4_MAIZE); contains Interpro domain(s) IPR002327 Cytochrome c, class IA/ IB "; GO:0020037 NbS00012429g0006.1 protein NbS00015280g0102.1 protein NbS00026358g0003.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=3e-14) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00032412g0006.1 protein ; (*GB) gi|81238592|gb|ABB60054.1| (e_value=3e-25) 11S globulin precursor isoform 3 [Sesamum indicum];; (*SWP) sp|P13744|11SB_CUCMA (e_value=4e-18) 11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1;; (*TAIR) AT1G03890.1 (e_value=4e-14) | Symbols: | RmlC-like cupins superfamily protein | chr1:989250-990908 FORWARD LENGTH=451;; (*ITAG) Solyc03g005580.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00032412g0007.1 protein NbS00006020g0006.1 protein ; (*GB) gi|255537825|ref|XP_002509979.1| (e_value=1e-34) calcineurin B, putative [Ricinus communis];; (*SWP) sp|O81223|CNBL4_ARATH (e_value=3e-30) Calcineurin B-like protein 4 OS=Arabidopsis thaliana GN=CBL4 PE=1 SV=3;; (*TAIR) AT5G24270.2 (e_value=2e-31) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc03g083320.2.1 (e_value=3e-35) genomic_reference:SL2.40ch03 gene_region:46697415-46700140 transcript_region:SL2.40ch03:46697415..46700140+ go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00024301g0002.1 protein NbS00033230g0003.1 protein NbS00033230g0104.1 protein NbS00033230g0209.1 protein NbS00036492g0001.1 protein NbS00019630g0004.1 protein NbS00019630g0005.1 protein NbS00019630g0006.1 protein NbC23838148g0001.1 protein ; (*GB) gi|255586903|ref|XP_002534056.1| (e_value=4e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G15680.1 (e_value=7e-32) | Symbols: | ARM repeat superfamily protein | chr5:5101188-5110793 REVERSE LENGTH=2153;; (*ITAG) Solyc02g089370.2.1 (e_value=2e-44) genomic_reference:SL2.40ch02 gene_region:45792081-45806674 transcript_region:SL2.40ch02:45792081..45806674+ functional_description:"Cell morphogenesis protein (AHRD V1 *--- C0NPN9_AJECG)"; NbS00000393g0012.1 protein ; (*GB) gi|42569461|ref|NP_180555.2| (e_value=1e-20) ABC transporter G family member 31 [Arabidopsis thaliana];; (*SWP) sp|Q7PC88|AB31G_ARATH (e_value=3e-22) ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1;; (*TAIR) AT2G29940.1 (e_value=2e-23) | Symbols: PDR3, ATPDR3 | pleiotropic drug resistance 3 | chr2:12760139-12766455 FORWARD LENGTH=1426;; (*ITAG) Solyc06g076930.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:44195038-44207721 transcript_region:SL2.40ch06:44195038..44207721+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 31 (AHRD V1 ***- AB31G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00000393g0013.1 protein NbS00000393g0007.1 protein ; (*GB) gi|225445228|ref|XP_002280942.1| (e_value=3e-105) PREDICTED: membrane-bound transcription factor site-1 protease [Vitis vinifera];; (*SWP) sp|Q9WTZ2|MBTP1_MOUSE (e_value=1e-38) Membrane-bound transcription factor site-1 protease OS=Mus musculus GN=Mbtps1 PE=1 SV=1;; (*TAIR) AT5G19660.1 (e_value=2e-92) | Symbols: ATSBT6.1, S1P, ATS1P | SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038;; (*ITAG) Solyc09g007300.1.1 (e_value=6e-157) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:890897-901864 transcript_region:SL2.40ch09:890897..901864- go_terms:GO:0004252 functional_description:"Subtilisin-like protein serine protease-like protein (AHRD V1 *--* D2ASL5_STRRD); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00022047g0003.1 protein NbS00043639g0007.1 protein NbS00004370g0021.1 protein NbS00049946g0003.1 protein ; (*GB) gi|224060179|ref|XP_002300071.1| (e_value=5e-32) predicted protein [Populus trichocarpa];; (*SWP) sp|Q55DA6|WBS22_DICDI (e_value=1e-23) Probable methyltransferase WBSCR22 homolog OS=Dictyostelium discoideum GN=DDB_G0269722 PE=3 SV=1;; (*TAIR) AT5G57280.1 (e_value=2e-33) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:23204533-23206485 FORWARD LENGTH=289;; (*ITAG) Solyc06g072250.2.1 (e_value=4e-40) genomic_reference:SL2.40ch06 gene_region:40902229-40906959 transcript_region:SL2.40ch06:40902229..40906959+ go_terms:GO:0016435 functional_description:"Methyltransferase WBSCR22 (AHRD V1 **-* B6TAS9_MAIZE); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0016435 NbS00015022g0005.1 protein NbS00004753g0007.1 protein NbS00009966g0004.1 protein ; (*GB) gi|63028790|gb|AAY27262.1| (e_value=4e-20) putative alfin-like transcription factor [Solanum tuberosum];; (*SWP) sp|Q8S8M9|ALFL6_ARATH (e_value=6e-21) PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana GN=AL6 PE=2 SV=1;; (*TAIR) AT2G02470.1 (e_value=5e-22) | Symbols: AL6 | alfin-like 6 | chr2:652837-654621 FORWARD LENGTH=256;; (*ITAG) Solyc01g102750.2.1 (e_value=8e-23) genomic_reference:SL2.40ch01 gene_region:83245131-83250588 transcript_region:SL2.40ch01:83245131..83250588+ go_terms:GO:0003677,GO:0035064 functional_description:"PHD finger family protein (AHRD V1 **-- D7KBK9_ARALY); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0003677,GO:0035064 NbS00010157g0102.1 protein NbS00010157g0103.1 protein NbS00004273g0004.1 protein NbS00004273g0005.1 protein NbS00051968g0005.1 protein ; (*ITAG) Solyc08g014370.1.1 (e_value=5e-24) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00054114g0001.1 protein ; (*GB) gi|225457739|ref|XP_002278020.1| (e_value=7e-21) PREDICTED: uncharacterized protein LOC100253998 [Vitis vinifera];; (*TAIR) AT1G21350.3 (e_value=3e-18) | Symbols: | Thioredoxin superfamily protein | chr1:7477376-7479012 REVERSE LENGTH=252;; (*ITAG) Solyc04g064930.2.1 (e_value=1e-35) genomic_reference:SL2.40ch04 gene_region:55198897-55205258 transcript_region:SL2.40ch04:55198897..55205258+ go_terms:GO:0016491,GO:0045454 functional_description:"Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (AHRD V1 ***- D5BYP3_NITHN); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454 NbS00011022g0003.1 protein NbS00052737g0001.1 protein NbS00002998g0004.1 protein NbS00029411g0002.1 protein NbS00029411g0004.1 protein NbS00009493g0001.1 protein NbS00016280g0001.1 protein ; (*GB) gi|222640671|gb|EEE68803.1| (e_value=3e-15) hypothetical protein OsJ_27549 [Oryza sativa Japonica Group]; NbS00019134g0003.1 protein NbS00010734g0003.1 protein NbS00020457g0003.1 protein NbS00020457g0004.1 protein NbS00000045g0004.1 protein NbS00030808g0002.1 protein NbS00030808g0003.1 protein NbS00000302g0004.1 protein NbS00000302g0006.1 protein ; (*GB) gi|222624672|gb|EEE58804.1| (e_value=1e-13) hypothetical protein OsJ_10355 [Oryza sativa Japonica Group];; (*SWP) sp|A5AEC8|ARGJ_VITVI (e_value=3e-14) Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Vitis vinifera GN=VITISV_037692 PE=3 SV=1;; (*TAIR) AT2G37500.1 (e_value=3e-14) | Symbols: | arginine biosynthesis protein ArgJ family | chr2:15739904-15742689 REVERSE LENGTH=468;; (*ITAG) Solyc09g010420.2.1 (e_value=2e-17) genomic_reference:SL2.40ch09 gene_region:3786597-3795092 transcript_region:SL2.40ch09:3786597..3795092- go_terms:GO:0004042,GO:0004358 functional_description:"Arginine biosynthesis bifunctional protein ArgJ (AHRD V1 ***- B4VHU0_9CYAN); contains Interpro domain(s) IPR002813 Arginine biosynthesis protein ArgJ "; GO:0004042,GO:0004358 NbS00007119g0004.1 protein ; (*GB) gi|238007870|gb|ACR34970.1| (e_value=6e-15) unknown [Zea mays]; NbS00017649g0005.1 protein ; (*TAIR) AT1G01040.2 (e_value=8e-13) | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1910;; (*ITAG) Solyc10g005130.2.1 (e_value=1e-30) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00023275g0007.1 protein NbS00028402g0006.1 protein ; (*GB) gi|255551449|ref|XP_002516770.1| (e_value=3e-67) vacuole membrane protein, putative [Ricinus communis];; (*SWP) sp|Q6NYY9|VMP1_DANRE (e_value=3e-15) Vacuole membrane protein 1 OS=Danio rerio GN=vmp1 PE=2 SV=1;; (*TAIR) AT4G14950.3 (e_value=1e-69) | Symbols: | SNARE associated Golgi protein family | chr4:8545551-8547722 FORWARD LENGTH=406;; (*ITAG) Solyc09g075850.2.1 (e_value=9e-89) genomic_reference:SL2.40ch09 gene_region:62981885-62989442 transcript_region:SL2.40ch09:62981885..62989442- functional_description:"Transmembrane protein 49 (AHRD V1 ***- B6TDW5_MAIZE)"; NbS00028402g0007.1 protein NbS00001536g0002.1 protein ; (*ITAG) Solyc03g115940.2.1 (e_value=4e-11) genomic_reference:SL2.40ch03 gene_region:59566770-59569400 transcript_region:SL2.40ch03:59566770..59569400- go_terms:GO:0005515,GO:0003700 functional_description:"Dof zinc finger protein (AHRD V1 ***- C4B6D7_IPOBA); contains Interpro domain(s) IPR003851 Zinc finger, Dof-type "; GO:0005515,GO:0003700 NbS00004626g0012.1 protein NbS00004626g0005.1 protein NbS00004626g0007.1 protein ; (*ITAG) Solyc03g063810.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:33528774-33530344 transcript_region:SL2.40ch03:33528774..33530344+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004626g0009.1 protein NbS00020143g0005.1 protein NbS00022280g0103.1 protein NbS00022280g0104.1 protein NbS00022280g0106.1 protein NbS00030826g0004.1 protein ; (*GB) gi|2467255|emb|CAA75214.1| (e_value=2e-49) annexin [Nicotiana tabacum];; (*SWP) sp|Q9SYT0|ANXD1_ARATH (e_value=8e-37) Annexin D1 OS=Arabidopsis thaliana GN=ANN1 PE=1 SV=1;; (*TAIR) AT1G35720.1 (e_value=6e-38) | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:13225304-13226939 FORWARD LENGTH=317;; (*ITAG) Solyc04g073990.2.1 (e_value=5e-49) genomic_reference:SL2.40ch04 gene_region:57610227-57612650 transcript_region:SL2.40ch04:57610227..57612650- go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- Q42657_CAPAN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00030826g0005.1 protein ; (*GB) gi|2467255|emb|CAA75214.1| (e_value=3e-24) annexin [Nicotiana tabacum];; (*SWP) sp|Q9SYT0|ANXD1_ARATH (e_value=2e-16) Annexin D1 OS=Arabidopsis thaliana GN=ANN1 PE=1 SV=1;; (*TAIR) AT1G35720.1 (e_value=2e-17) | Symbols: ANNAT1, OXY5, ATOXY5 | annexin 1 | chr1:13225304-13226939 FORWARD LENGTH=317;; (*ITAG) Solyc04g073990.2.1 (e_value=9e-25) genomic_reference:SL2.40ch04 gene_region:57610227-57612650 transcript_region:SL2.40ch04:57610227..57612650- go_terms:GO:0005544 functional_description:"Annexin (AHRD V1 ***- Q42657_CAPAN); contains Interpro domain(s) IPR009118 Annexin, type plant "; GO:0005544 NbS00031401g0004.1 protein NbS00011001g0003.1 protein NbS00011001g0004.1 protein NbS00001900g0004.1 protein ; (*ITAG) Solyc05g056030.2.1 (e_value=6e-16) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00001900g0006.1 protein NbS00001900g0007.1 protein ; (*GB) gi|224119660|ref|XP_002318128.1| (e_value=4e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8LBB2|KING1_ARATH (e_value=5e-19) SNF1-related protein kinase regulatory subunit gamma-1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2;; (*TAIR) AT3G48530.1 (e_value=3e-20) | Symbols: KING1 | SNF1-related protein kinase regulatory subunit gamma 1 | chr3:17987559-17989592 FORWARD LENGTH=424;; (*ITAG) Solyc03g111310.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:55978825-55983439 transcript_region:SL2.40ch03:55978825..55983439+ functional_description:"AKIN gamma (AHRD V1 **-- Q7XYY0_MEDTR); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00001900g0008.1 protein NbS00025336g0003.1 protein NbS00025336g0006.1 protein NbS00024397g0004.1 protein NbS00030546g0108.1 protein NbS00018897g0001.1 protein ; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=6e-14) importin beta-3, putative [Ricinus communis];; (*ITAG) Solyc01g044360.2.1 (e_value=9e-17) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00012938g0005.1 protein NbS00017395g0001.1 protein NbS00017395g0002.1 protein NbS00017395g0003.1 protein NbS00017395g0105.1 protein NbS00041610g0001.1 protein NbS00032010g0005.1 protein NbS00008275g0006.1 protein NbS00004409g0014.1 protein NbS00004409g0009.1 protein NbS00004409g0010.1 protein NbS00023771g0001.1 protein ; (*GB) gi|255566941|ref|XP_002524453.1| (e_value=2e-14) serine/threonine protein kinase, putative [Ricinus communis];; (*ITAG) Solyc12g006690.1.1 (e_value=4e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1152815-1155108 transcript_region:SL2.40ch12:1152815..1155108- go_terms:GO:0004676 functional_description:"Kinase family protein (AHRD V1 **** D7LER6_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004676 NbS00023376g0001.1 protein NbC23812137g0001.1 protein ; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=6e-24) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|Q84R49|GUN10_ORYSJ (e_value=1e-22) Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1;; (*TAIR) AT5G49720.1 (e_value=5e-22) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc01g102580.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:83117822-83121772 transcript_region:SL2.40ch01:83117822..83121772- go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00013061g0003.1 protein NbS00013061g0104.1 protein NbS00004002g0002.1 protein NbS00026445g0004.1 protein ; (*GB) gi|356555969|ref|XP_003546300.1| (e_value=2e-54) PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=2e-52) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.2 (e_value=2e-53) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1015;; (*ITAG) Solyc01g057900.2.1 (e_value=9e-60) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00035863g0003.1 protein NbS00007644g0004.1 protein NbS00026142g0002.1 protein ; (*ITAG) Solyc09g061300.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:54223089-54223541 transcript_region:SL2.40ch09:54223089..54223541+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004114g0006.1 protein ; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=4e-14) FtsH protease-like [Solanum lycopersicum];; (*ITAG) Solyc11g069950.1.1 (e_value=8e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51629743-51639001 transcript_region:SL2.40ch11:51629743..51639001+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00031231g0003.1 protein ; (*GB) gi|224063941|ref|XP_002301312.1| (e_value=2e-62) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9UT49|CID13_SCHPO (e_value=3e-20) Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cid13 PE=1 SV=1;; (*TAIR) AT2G45620.1 (e_value=3e-58) | Symbols: | Nucleotidyltransferase family protein | chr2:18792943-18795750 FORWARD LENGTH=764;; (*ITAG) Solyc01g094000.2.1 (e_value=2e-67) genomic_reference:SL2.40ch01 gene_region:77331399-77342103 transcript_region:SL2.40ch01:77331399..77342103- go_terms:GO:0016779 functional_description:"Poly(A) RNA polymerase (AHRD V1 *--- B6K2B5_SCHJY); contains Interpro domain(s) IPR002058 PAP/25A-associated "; GO:0016779 NbS00031377g0003.1 protein NbS00002008g0004.1 protein NbS00006769g0011.1 protein NbS00006769g0017.1 protein NbS00006769g0018.1 protein NbS00006769g0010.1 protein NbS00034631g0002.1 protein NbS00013188g0004.1 protein NbS00013188g0007.1 protein NbS00006193g0002.1 protein NbS00013773g0003.1 protein NbS00013773g0004.1 protein NbS00001431g0003.1 protein ; (*GB) gi|224106842|ref|XP_002314303.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*SWP) sp|Q42572|DNLI1_ARATH (e_value=3e-19) DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 PE=2 SV=2;; (*TAIR) AT1G08130.1 (e_value=2e-20) | Symbols: ATLIG1, LIG1 | DNA ligase 1 | chr1:2542913-2547815 REVERSE LENGTH=790;; (*ITAG) Solyc11g066370.1.1 (e_value=4e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:49208756-49221834 transcript_region:SL2.40ch11:49208756..49221834- go_terms:GO:0006310,GO:0051103 functional_description:"DNA ligase (AHRD V1 ***- B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase "; GO:0006310,GO:0051103 NbS00002932g0006.1 protein NbS00036104g0004.1 protein NbS00036104g0009.1 protein NbS00012531g0001.1 protein ; (*GB) gi|350539199|ref|NP_001234124.1| (e_value=8e-19) partially similar to pantothenate kinase family protein [Solanum lycopersicum];; (*SWP) sp|O80765|PANK1_ARATH (e_value=5e-18) Pantothenate kinase 1 OS=Arabidopsis thaliana GN=COAA PE=2 SV=2;; (*TAIR) AT1G60440.1 (e_value=4e-19) | Symbols: ATCOAA, ATPANK1, PANK1 | pantothenate kinase 1 | chr1:22266653-22269070 REVERSE LENGTH=383;; (*ITAG) Solyc05g005250.2.1 (e_value=1e-21) genomic_reference:SL2.40ch05 gene_region:195242-204180 transcript_region:SL2.40ch05:195242..204180+ go_terms:GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 **** C1MLQ0_MICPS); contains Interpro domain(s) IPR004567 Eukaryotic pantothenate kinase IPR011602 Fumble "; GO:0004594 NbS00014928g0003.1 protein NbS00014928g0004.1 protein NbS00010519g0002.1 protein NbS00010519g0004.1 protein NbS00007071g0106.1 protein NbS00027021g0002.1 protein NbS00049361g0001.1 protein NbC24079681g0002.1 protein ; (*GB) gi|224090823|ref|XP_002309097.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G60070.1 (e_value=4e-13) | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142944-22149296 REVERSE LENGTH=862;; (*ITAG) Solyc04g025870.2.1 (e_value=2e-26) genomic_reference:SL2.40ch04 gene_region:22707259-22748403 transcript_region:SL2.40ch04:22707259..22748403- go_terms:GO:0030276 functional_description:"AP-1 complex subunit gamma-1 (AHRD V1 ***- B6SV75_MAIZE); contains Interpro domain(s) IPR017107 Adaptor protein complex AP-1, gamma subunit "; GO:0030276 NbS00048909g0001.1 protein NbS00036509g0010.1 protein NbS00029502g0004.1 protein NbS00029502g0005.1 protein NbS00012658g0002.1 protein NbS00015394g0014.1 protein NbS00015394g0007.1 protein NbS00015394g0009.1 protein NbS00015394g0010.1 protein NbS00002261g0001.1 protein NbS00052707g0004.1 protein NbC23855827g0002.1 protein ; (*GB) gi|218310|dbj|BAA01974.1| (e_value=2e-33) chloroplast elongation factor TuA (EF-TuA) [Nicotiana sylvestris];; (*SWP) sp|P68158|EFTU_TOBAC (e_value=6e-35) Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1;; (*TAIR) AT4G20360.1 (e_value=2e-30) | Symbols: ATRAB8D, ATRABE1B, RABE1b | RAB GTPase homolog E1B | chr4:10990036-10991466 FORWARD LENGTH=476;; (*ITAG) Solyc03g112150.1.1 (e_value=9e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:56698575-56700008 transcript_region:SL2.40ch03:56698575..56700008+ go_terms:GO:0003746 functional_description:"Elongation factor Tu (AHRD V1 **** D7MFK2_ARALY); contains Interpro domain(s) IPR004541 Translation elongation factor EFTu/EF1A, bacterial and organelle "; GO:0003746 NbS00012953g0001.1 protein ; (*GB) gi|343172074|gb|AEL98741.1| (e_value=5e-13) cyclopropane-fatty-acyl-phospholipid synthase, partial [Silene latifolia];; (*TAIR) AT3G23510.1 (e_value=2e-15) | Symbols: | Cyclopropane-fatty-acyl-phospholipid synthase | chr3:8428071-8433159 FORWARD LENGTH=867;; (*ITAG) Solyc09g090500.2.1 (e_value=2e-16) genomic_reference:SL2.40ch09 gene_region:65347757-65350794 transcript_region:SL2.40ch09:65347757..65350794+ go_terms:GO:0005515 functional_description:"Cyclopropane-fatty-acyl-phospholipid synthase (AHRD V1 ***- C7LRK7_DESBD); contains Interpro domain(s) IPR003333 Cyclopropane-fatty-acyl-phospholipid synthase "; GO:0005515 NbS00039897g0006.1 protein NbS00039897g0007.1 protein NbS00021104g0011.1 protein NbS00021104g0005.1 protein NbS00021104g0010.1 protein NbS00007798g0003.1 protein NbS00007798g0005.1 protein NbS00000459g0009.1 protein NbS00000351g0003.1 protein NbS00013028g0003.1 protein NbS00037760g0001.1 protein NbS00005542g0004.1 protein NbS00002068g0003.1 protein NbS00007194g0008.1 protein NbS00007194g0009.1 protein NbS00007194g0109.1 protein NbS00007194g0110.1 protein NbS00004439g0003.1 protein NbS00014345g0006.1 protein NbS00003761g0002.1 protein NbS00030135g0008.1 protein NbS00022075g0004.1 protein NbC25106134g0002.1 protein ; (*GB) gi|262192739|gb|ACY30439.1| (e_value=2e-16) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT4G37130.1 (e_value=1e-14) | Symbols: | hydroxyproline-rich glycoprotein family protein | chr4:17489567-17491773 FORWARD LENGTH=513;; (*ITAG) Solyc02g090230.2.1 (e_value=4e-23) genomic_reference:SL2.40ch02 gene_region:46429888-46437493 transcript_region:SL2.40ch02:46429888..46437493+ functional_description:"Nucleoporin p58/p45 (AHRD V1 ***- B4FHB0_MAIZE)"; NbS00004142g0008.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-12) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00054223g0003.1 protein NbS00054223g0004.1 protein ; (*GB) gi|38564727|gb|AAR23803.1| (e_value=2e-32) putative alpha-soluble NSF attachment protein [Helianthus annuus];; (*SWP) sp|Q9M5P8|SNAA_SOLTU (e_value=4e-30) Alpha-soluble NSF attachment protein OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G56190.1 (e_value=3e-17) | Symbols: ALPHA-SNAP2, ASNAP | alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289;; (*ITAG) Solyc06g050770.2.1 (e_value=6e-32) genomic_reference:SL2.40ch06 gene_region:30039629-30046725 transcript_region:SL2.40ch06:30039629..30046725- go_terms:GO:0005483 functional_description:"Alpha-soluble NSF attachment protein (AHRD V1 **** D2D2Z7_GOSHI); contains Interpro domain(s) IPR000744 NSF attachment protein "; GO:0005483 NbS00000638g0003.1 protein NbS00000638g0005.1 protein NbS00014691g0001.1 protein NbS00043624g0002.1 protein ; (*GB) gi|297735060|emb|CBI17422.3| (e_value=2e-13) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g084640.2.1 (e_value=2e-16) genomic_reference:SL2.40ch02 gene_region:42316560-42321101 transcript_region:SL2.40ch02:42316560..42321101+ go_terms:GO:0004028 functional_description:"Aldehyde dehydrogenase (AHRD V1 **** Q71LY7_ORYSI); contains Interpro domain(s) IPR012394 Aldehyde dehydrogenase NAD(P)-dependent IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00048651g0005.1 protein NbS00002935g0004.1 protein NbS00022633g0001.1 protein NbS00002612g0012.1 protein NbS00002612g0015.1 protein NbS00002612g0010.1 protein NbS00003655g0003.1 protein NbS00033621g0001.1 protein ; (*GB) gi|356545708|ref|XP_003541278.1| (e_value=1e-21) PREDICTED: WD repeat-containing protein 75-like [Glycine max];; (*TAIR) AT2G18900.1 (e_value=5e-14) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8188491-8192409 REVERSE LENGTH=804;; (*ITAG) Solyc07g066410.2.1 (e_value=1e-44) genomic_reference:SL2.40ch07 gene_region:65063199-65073697 transcript_region:SL2.40ch07:65063199..65073697- functional_description:"WD repeat protein (AHRD V1 ***- B6QUX1_PENMQ); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00023542g0004.1 protein NbS00033097g0003.1 protein NbS00018574g0002.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=2e-33) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=5e-16) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=2e-19) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00007373g0015.1 protein NbS00038903g0003.1 protein NbS00038903g0005.1 protein NbS00007392g0005.1 protein NbS00007392g0007.1 protein ; (*ITAG) Solyc09g072770.1.1 (e_value=3e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch09 gene_region:60943399-60944010 transcript_region:SL2.40ch09:60943399..60944010+ functional_description:"mRNA clone RAFL22-93-M12 (Fragment) (AHRD V1 *-*- Q67ZI7_ARATH)"; NbS00021835g0006.1 protein NbS00008930g0005.1 protein NbS00008930g0006.1 protein NbS00008930g0009.1 protein ; (*GB) gi|224068671|ref|XP_002302796.1| (e_value=7e-37) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62240.1 (e_value=3e-32) | Symbols: | RING/U-box superfamily protein | chr3:23033592-23036653 REVERSE LENGTH=812;; (*ITAG) Solyc01g068390.2.1 (e_value=3e-45) genomic_reference:SL2.40ch01 gene_region:69990846-69996128 transcript_region:SL2.40ch01:69990846..69996128- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LSV3_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00026294g0006.1 protein NbS00026294g0009.1 protein ; (*GB) gi|224068695|ref|XP_002302802.1| (e_value=7e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62190.1 (e_value=1e-14) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:23021146-23022614 FORWARD LENGTH=138;; (*ITAG) Solyc06g009340.2.1 (e_value=9e-24) genomic_reference:SL2.40ch06 gene_region:3289342-3291634 transcript_region:SL2.40ch06:3289342..3291634+ go_terms:GO:0031072 functional_description:"DNAJ heat shock N-terminal domain-containing protein (AHRD V1 ***- D7LSU9_ARALY); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00056105g0001.1 protein NbS00012093g0012.1 protein ; (*ITAG) Solyc01g059900.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:62040825-62041421 transcript_region:SL2.40ch01:62040825..62041421+ functional_description:"Dirigent-like protein (AHRD V1 ***- A6YR04_PICSI); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00012093g0008.1 protein NbS00027368g0011.1 protein NbS00012796g0008.1 protein NbS00012796g0009.1 protein NbS00021969g0005.1 protein NbS00021969g0006.1 protein NbS00030759g0006.1 protein NbS00023312g0004.1 protein NbS00043147g0004.1 protein NbS00043147g0009.1 protein ; (*ITAG) Solyc07g018000.2.1 (e_value=2e-51) genomic_reference:SL2.40ch07 gene_region:8779431-8791044 transcript_region:SL2.40ch07:8779431..8791044+ go_terms:GO:0005622 functional_description:"DNA ligase (AHRD V1 ***- B9IN68_POPTR); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00016132g0004.1 protein NbS00016132g0005.1 protein NbS00006214g0002.1 protein NbS00015723g0003.1 protein ; (*GB) gi|356510122|ref|XP_003523789.1| (e_value=3e-45) PREDICTED: double-stranded RNA-binding protein 1-like [Glycine max];; (*SWP) sp|O04492|DRB1_ARATH (e_value=4e-39) Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1;; (*TAIR) AT1G09700.1 (e_value=3e-40) | Symbols: HYL1, DRB1 | dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419;; (*ITAG) Solyc04g076420.2.1 (e_value=5e-44) genomic_reference:SL2.40ch04 gene_region:58909755-58914890 transcript_region:SL2.40ch04:58909755..58914890+ go_terms:GO:0005622 functional_description:"DsRNA-binding protein (AHRD V1 *-*- Q8GUQ1_BRARA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding "; GO:0005622 NbS00015723g0005.1 protein NbS00009776g0006.1 protein NbS00009776g0007.1 protein NbS00038590g0001.1 protein NbS00009672g0002.1 protein NbS00051670g0002.1 protein NbS00013783g0008.1 protein NbS00008675g0007.1 protein NbS00041378g0003.1 protein NbS00019430g0002.1 protein NbS00022114g0004.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-27) hypothetical protein [Nicotiana tabacum]; NbS00017034g0013.1 protein NbS00017034g0007.1 protein NbS00046668g0003.1 protein NbS00009410g0006.1 protein NbS00009410g0007.1 protein NbS00013969g0004.1 protein NbS00020990g0006.1 protein NbS00033910g0002.1 protein NbS00038102g0001.1 protein NbS00015434g0004.1 protein ; (*GB) gi|357499203|ref|XP_003619890.1| (e_value=4e-14) Guanine nucleotide-binding protein alpha-2 subunit [Medicago truncatula];; (*ITAG) Solyc03g097980.2.1 (e_value=6e-25) genomic_reference:SL2.40ch03 gene_region:53790071-53796491 transcript_region:SL2.40ch03:53790071..53796491- go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00026561g0003.1 protein ; (*GB) gi|296083926|emb|CBI24314.3| (e_value=9e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G12290.1 (e_value=5e-25) | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974374-3978066 REVERSE LENGTH=602;; (*ITAG) Solyc01g009030.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:3025820-3038891 transcript_region:SL2.40ch01:3025820..3038891+ functional_description:"Nuclear control of ATPase protein (AHRD V1 *--- C9SK53_VERA1); contains Interpro domain(s) IPR013946 Nuclear control of ATP synthase 2 "; NbS00026561g0005.1 protein NbS00049068g0001.1 protein NbS00030087g0002.1 protein NbS00023362g0001.1 protein ; (*GB) gi|255585712|ref|XP_002533538.1| (e_value=2e-31) Multidrug resistance protein, putative [Ricinus communis];; (*SWP) sp|Q9FNU2|AB25B_ORYSJ (e_value=1e-31) ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1;; (*TAIR) AT5G39040.1 (e_value=2e-31) | Symbols: ALS1, ATTAP2, TAP2 | transporter associated with antigen processing protein 2 | chr5:15625660-15629621 FORWARD LENGTH=644;; (*ITAG) Solyc03g114950.2.1 (e_value=4e-31) genomic_reference:SL2.40ch03 gene_region:58864908-58870209 transcript_region:SL2.40ch03:58864908..58870209+ go_terms:GO:0042803 functional_description:"Lipid a export ATP-binding/permease protein msba (AHRD V1 ***- Q17P67_AEDAE); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0042803 NbS00040305g0004.1 protein NbS00003734g0105.1 protein NbS00002664g0002.1 protein NbS00000416g0005.1 protein NbS00032900g0002.1 protein NbS00045745g0003.1 protein NbS00024257g0011.1 protein NbS00008039g0003.1 protein NbS00035275g0002.1 protein NbS00027717g0001.1 protein NbS00008372g0004.1 protein ; (*GB) gi|133711808|gb|ABO36626.1| (e_value=7e-14) hypothetical protein LYC_68t000011 [Solanum lycopersicum];; (*ITAG) Solyc10g079220.2.1 (e_value=1e-16) genomic_reference:SL2.40ch10 gene_region:60125137-60126209 transcript_region:SL2.40ch10:60125137..60126209- go_terms:GO:0045449 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00014675g0001.1 protein NbS00040400g0001.1 protein NbS00021785g0005.1 protein NbS00004643g0011.1 protein NbS00022186g0014.1 protein NbS00022186g0006.1 protein ; (*GB) gi|225437941|ref|XP_002268868.1| (e_value=5e-34) PREDICTED: uncharacterized protein LOC100241271 [Vitis vinifera];; (*TAIR) AT4G28703.1 (e_value=3e-28) | Symbols: | RmlC-like cupins superfamily protein | chr4:14166365-14166798 FORWARD LENGTH=107;; (*ITAG) Solyc06g008100.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:1986727-1987725 transcript_region:SL2.40ch06:1986727..1987725- functional_description:"Enzyme of the cupin superfamily (AHRD V1 ***- B6T5M3_MAIZE); contains Interpro domain(s) IPR008579 Protein of unknown function DUF861, cupin-3 "; NbS00035979g0002.1 protein NbS00035716g0004.1 protein NbS00005136g0004.1 protein NbS00022170g0004.1 protein ; (*GB) gi|302143704|emb|CBI22565.3| (e_value=3e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G65810.2 (e_value=6e-18) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24477043-24480728 REVERSE LENGTH=1016;; (*ITAG) Solyc03g031910.2.1 (e_value=1e-26) genomic_reference:SL2.40ch03 gene_region:8650616-8654786 transcript_region:SL2.40ch03:8650616..8654786- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00003096g0006.1 protein ; (*GB) gi|255545018|ref|XP_002513570.1| (e_value=3e-35) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q5SN75|P2C08_ORYSJ (e_value=1e-30) Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1;; (*TAIR) AT3G11410.1 (e_value=1e-27) | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 2CA | chr3:3584181-3585649 REVERSE LENGTH=399;; (*ITAG) Solyc03g007230.2.1 (e_value=2e-48) genomic_reference:SL2.40ch03 gene_region:1792295-1794884 transcript_region:SL2.40ch03:1792295..1794884+ go_terms:GO:0005975,GO:0008287,GO:0003824 functional_description:"Protein phosphatase 2C (AHRD V1 ***- B1B5N6_PHYPA); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0005975,GO:0008287,GO:0003824 NbS00001259g0111.1 protein NbS00000996g0001.1 protein NbS00058715g0002.1 protein NbS00028642g0006.1 protein NbS00000032g0002.1 protein ; (*GB) gi|9627960|ref|NP_042514.1| (e_value=7e-20) hypothetical protein [Peanut chlorotic streak virus]; NbS00040477g0002.1 protein NbS00009063g0002.1 protein NbS00009063g0005.1 protein NbS00007187g0001.1 protein NbS00022339g0008.1 protein NbS00022339g0010.1 protein NbS00002009g0003.1 protein NbS00016570g0004.1 protein NbS00057913g0003.1 protein NbS00057913g0004.1 protein NbS00059872g0002.1 protein NbS00003049g0006.1 protein NbS00003049g0010.1 protein ; (*GB) gi|42570018|ref|NP_671802.2| (e_value=3e-13) Mitovirus RNA-dependent RNA polymerase [Arabidopsis thaliana];; (*SWP) sp|P92543|M1110_ARATH (e_value=1e-14) Uncharacterized mitochondrial protein AtMg01110 OS=Arabidopsis thaliana GN=AtMg01110 PE=4 SV=1;; (*TAIR) AT2G07749.1 (e_value=7e-16) | Symbols: | Mitovirus RNA-dependent RNA polymerase | chr2:3247234-3247974 FORWARD LENGTH=246;; (*ITAG) Solyc00g142170.2.1 (e_value=1e-21) genomic_reference:SL2.40ch00 gene_region:17156703-17158111 transcript_region:SL2.40ch00:17156703..17158111- functional_description:"RNA-dependent RNA polymerase (AHRD V1 *-*- Q18L78_9VIRU); contains Interpro domain(s) IPR008686 RNA-dependent RNA polymerase, mitoviral "; NbS00027600g0001.1 protein ; (*GB) gi|380467915|gb|AFD61545.1| (e_value=5e-18) WD-40 repeat protein MSI4 [Dendrobium nobile];; (*SWP) sp|O22607|MSI4_ARATH (e_value=3e-17) WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3;; (*TAIR) AT2G19520.1 (e_value=2e-18) | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507;; (*ITAG) Solyc03g121580.2.1 (e_value=2e-19) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00004018g0006.1 protein ; (*GB) gi|357150263|ref|XP_003575399.1| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100840036 [Brachypodium distachyon]; NbS00017847g0006.1 protein NbS00047767g0006.1 protein ; (*GB) gi|40809925|dbj|BAD07294.1| (e_value=5e-44) prolyl 4-hydroxylase [Nicotiana tabacum];; (*TAIR) AT4G33910.1 (e_value=1e-43) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:16256943-16258614 REVERSE LENGTH=288;; (*ITAG) Solyc02g092710.2.1 (e_value=2e-54) genomic_reference:SL2.40ch02 gene_region:48279731-48285461 transcript_region:SL2.40ch02:48279731..48285461+ go_terms:GO:0004656 functional_description:"Prolyl 4-hydroxylase alpha-2 subunit (AHRD V1 ***- B6TYA6_MAIZE); contains Interpro domain(s) IPR006620 Prolyl 4-hydroxylase, alpha subunit "; GO:0004656 NbS00013423g0006.1 protein NbS00004124g0012.1 protein ; (*GB) gi|18397679|ref|NP_564364.1| (e_value=6e-14) actin related protein 2/3 complex, subunit 2 [Arabidopsis thaliana];; (*TAIR) AT1G30825.1 (e_value=1e-16) | Symbols: ARPC2A, DIS2 | Arp2/3 complex, 34 kD subunit p34-Arc | chr1:10961106-10962999 FORWARD LENGTH=318;; (*ITAG) Solyc11g068610.1.1 (e_value=4e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50339390-50346971 transcript_region:SL2.40ch11:50339390..50346971+ go_terms:GO:0005200 functional_description:"Actin related protein 2/3 complex subunit 2 (AHRD V1 ***- D8RD91_SELML); contains Interpro domain(s) IPR007188 Arp2/3 complex, 34kDa subunit p34-Arc "; GO:0005200 NbS00034683g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-38) hypothetical protein [Nicotiana tabacum]; NbS00008807g0004.1 protein NbS00004646g0001.1 protein NbS00035565g0006.1 protein NbS00041287g0002.1 protein NbS00041287g0004.1 protein NbS00032055g0002.1 protein NbS00012571g0005.1 protein NbS00012571g0006.1 protein NbS00012571g0007.1 protein NbS00017148g0007.1 protein ; (*ITAG) Solyc09g089550.2.1 (e_value=1e-33) genomic_reference:SL2.40ch09 gene_region:64600682-64605131 transcript_region:SL2.40ch09:64600682..64605131- functional_description:"Zinc finger-homeodomain protein 2 (Fragment) (AHRD V1 *--- B0LK10_ESCCA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; NbS00017148g0008.1 protein NbS00040555g0002.1 protein ; (*GB) gi|356537274|ref|XP_003537154.1| (e_value=4e-19) PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 734A1-like [Glycine max];; (*SWP) sp|B9X287|C7346_ORYSJ (e_value=5e-14) Cytochrome P450 734A6 OS=Oryza sativa subsp. japonica GN=CYP734A6 PE=2 SV=1;; (*TAIR) AT1G75130.1 (e_value=2e-15) | Symbols: CYP721A1 | cytochrome P450, family 721, subfamily A, polypeptide 1 | chr1:28200073-28201911 REVERSE LENGTH=505;; (*ITAG) Solyc07g025370.2.1 (e_value=3e-21) genomic_reference:SL2.40ch07 gene_region:27573617-27577699 transcript_region:SL2.40ch07:27573617..27577699+ go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00060277g0002.1 protein NbS00022315g0004.1 protein NbS00000637g0005.1 protein NbS00012041g0003.1 protein NbS00012041g0005.1 protein NbS00009719g0003.1 protein NbS00009719g0114.1 protein NbS00009719g0109.1 protein NbS00009719g0110.1 protein NbS00021385g0202.1 protein NbS00024169g0003.1 protein NbS00038919g0003.1 protein ; (*GB) gi|87241403|gb|ABD33261.1| (e_value=6e-18) RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula];; (*ITAG) Solyc04g054680.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52132405-52134862 transcript_region:SL2.40ch04:52132405..52134862+ go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00011100g0002.1 protein NbS00023644g0005.1 protein NbS00030816g0002.1 protein NbS00021657g0005.1 protein ; (*GB) gi|4165154|gb|AAD08711.1| (e_value=7e-116) topoisomerase I [Nicotiana tabacum];; (*SWP) sp|P93119|TOP1_DAUCA (e_value=7e-81) DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1;; (*TAIR) AT5G55310.1 (e_value=9e-75) | Symbols: TOP1BETA, TOP1 | DNA topoisomerase 1 beta | chr5:22430389-22434590 REVERSE LENGTH=917;; (*ITAG) Solyc07g049720.2.1 (e_value=8e-111) genomic_reference:SL2.40ch07 gene_region:57386210-57396174 transcript_region:SL2.40ch07:57386210..57396174- go_terms:GO:0003917 functional_description:"DNA topoisomerase I (AHRD V1 **** Q9XGL1_DAUCA); contains Interpro domain(s) IPR013499 DNA topoisomerase I, C-terminal, eukaryotic-type "; GO:0003917 NbS00009897g0003.1 protein NbS00016019g0008.1 protein ; (*GB) gi|2497542|sp|Q40546.1|KPYG_TOBAC (e_value=8e-20) RecName: Full=Pyruvate kinase isozyme G, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40546|KPYG_TOBAC (e_value=2e-21) Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc08g077180.2.1 (e_value=3e-20) genomic_reference:SL2.40ch08 gene_region:58254085-58261125 transcript_region:SL2.40ch08:58254085..58261125- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q53WS7_TOBAC); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00010565g0002.1 protein ; (*GB) gi|225436954|ref|XP_002271834.1| (e_value=4e-16) PREDICTED: phosphate metabolism protein 7-like [Vitis vinifera];; (*TAIR) AT4G02900.1 (e_value=2e-17) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr4:1284066-1287747 FORWARD LENGTH=785;; (*ITAG) Solyc06g084330.2.1 (e_value=7e-28) genomic_reference:SL2.40ch06 gene_region:45777999-45781628 transcript_region:SL2.40ch06:45777999..45781628+ go_terms:GO:0016020 functional_description:"Hv711N16.16 (Fragment) (AHRD V1 *--- Q8LLC2_HORVU); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00010565g0005.1 protein NbS00001812g0001.1 protein NbS00006656g0001.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=3e-14) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00016281g0004.1 protein NbS00004041g0008.1 protein NbC25229091g0002.1 protein ; (*GB) gi|356574396|ref|XP_003555334.1| (e_value=8e-47) PREDICTED: transcription regulatory protein SNF2-like [Glycine max];; (*SWP) sp|Q6DIC0|SMCA2_MOUSE (e_value=4e-15) Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1;; (*TAIR) AT3G06010.1 (e_value=5e-44) | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102;; (*ITAG) Solyc01g079690.2.1 (e_value=9e-47) genomic_reference:SL2.40ch01 gene_region:71309355-71316439 transcript_region:SL2.40ch01:71309355..71316439- go_terms:GO:0004003 functional_description:"ATP-dependent DNA helicase Snf22 (AHRD V1 *--* B6K540_SCHJY); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00028386g0004.1 protein NbC23795695g0001.1 protein ; (*GB) gi|13449373|ref|NP_085555.1| (e_value=1e-21) hypothetical protein ArthMp088 [Arabidopsis thaliana];; (*SWP) sp|P92535|M1010_ARATH (e_value=4e-23) Uncharacterized mitochondrial protein AtMg01010 OS=Arabidopsis thaliana GN=AtMg01010 PE=4 SV=1;; (*ITAG) ATMG01010.1 (e_value=3e-24) | Symbols: ORF118 | Unknown conserved protein | chrM:261105-261461 REVERSE LENGTH=118;; (*ITAG) Solyc11g056330.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00014406g0004.1 protein NbS00002203g0002.1 protein NbS00003768g0003.1 protein NbS00001364g0006.1 protein ; (*GB) gi|110676572|gb|ABG85154.1| (e_value=3e-117) RhoGAP1 [Nicotiana tabacum];; (*TAIR) AT5G22400.1 (e_value=1e-36) | Symbols: | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain | chr5:7423050-7425335 REVERSE LENGTH=466;; (*ITAG) Solyc11g068520.1.1 (e_value=4e-103) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50302920-50308182 transcript_region:SL2.40ch11:50302920..50308182+ go_terms:GO:0005622 functional_description:"Rho GTPase activating protein 2 (AHRD V1 *-*- Q6UQ72_ORYSJ); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005622 NbS00001364g0008.1 protein NbC24016995g0001.1 protein ; (*GB) gi|225429750|ref|XP_002282410.1| (e_value=4e-27) PREDICTED: coatomer subunit beta-1 [Vitis vinifera];; (*SWP) sp|Q9SV20|COPB2_ARATH (e_value=2e-25) Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2 SV=2;; (*TAIR) AT4G31490.1 (e_value=1e-26) | Symbols: | Coatomer, beta subunit | chr4:15269460-15272693 FORWARD LENGTH=948;; (*ITAG) Solyc10g081920.1.1 (e_value=1e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62184972-62189867 transcript_region:SL2.40ch10:62184972..62189867- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00008667g0006.1 protein NbS00008667g0008.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00021188g0003.1 protein NbS00021188g0004.1 protein NbS00021188g0007.1 protein NbS00000195g0001.1 protein NbS00040240g0001.1 protein NbS00002281g0006.1 protein NbS00005139g0008.1 protein NbS00007992g0105.1 protein NbS00032296g0006.1 protein NbS00032296g0007.1 protein NbS00020290g0006.1 protein NbS00020290g0009.1 protein ; (*GB) gi|147842487|emb|CAN65222.1| (e_value=1e-13) hypothetical protein VITISV_038665 [Vitis vinifera];; (*ITAG) Solyc01g067050.1.1 (e_value=9e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:67773499-67775375 transcript_region:SL2.40ch01:67773499..67775375- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Gag-Pol polyprotein (AHRD V1 ***- B8YLY3_MEDTR); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00020290g0010.1 protein ; (*GB) gi|85068626|gb|ABC69393.1| (e_value=2e-46) CYP72A55v2 [Nicotiana tabacum];; (*SWP) sp|Q9SHG5|C72C1_ARATH (e_value=1e-23) Cytochrome P450 72C1 OS=Arabidopsis thaliana GN=CYP72C1 PE=2 SV=2;; (*TAIR) AT3G14610.1 (e_value=8e-27) | Symbols: CYP72A7 | cytochrome P450, family 72, subfamily A, polypeptide 7 | chr3:4912565-4914503 FORWARD LENGTH=512;; (*ITAG) Solyc07g055550.1.1 (e_value=8e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60857157-60860735 transcript_region:SL2.40ch07:60857157..60860735- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00027421g0003.1 protein NbS00007752g0001.1 protein ; (*ITAG) Solyc03g119470.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:62127360-62130518 transcript_region:SL2.40ch03:62127360..62130518+ go_terms:GO:0005840 functional_description:"cDNA clone J023065D24 full insert sequence (AHRD V1 *-*- B7EKP5_ORYSJ); contains Interpro domain(s) IPR012870 Protein of unknown function DUF1666 "; GO:0005840 NbS00002559g0004.1 protein NbS00002559g0005.1 protein NbS00006067g0003.1 protein NbS00006067g0004.1 protein NbS00018089g0006.1 protein NbS00004191g0006.1 protein NbS00034278g0002.1 protein ; (*GB) gi|27529836|dbj|BAC53933.1| (e_value=1e-64) hypothetical protein [Nicotiana tabacum];; (*TAIR) AT2G42320.2 (e_value=2e-48) | Symbols: | nucleolar protein gar2-related | chr2:17628102-17630657 FORWARD LENGTH=669;; (*ITAG) Solyc03g051790.2.1 (e_value=6e-63) genomic_reference:SL2.40ch03 gene_region:18795546-18800624 transcript_region:SL2.40ch03:18795546..18800624+ functional_description:"Os12g0236050 protein (Fragment) (AHRD V1 *-*- C7J9Q6_ORYSJ)"; NbS00015688g0001.1 protein NbS00000624g0004.1 protein NbS00006453g0002.1 protein NbS00009804g0004.1 protein NbS00021061g0106.1 protein NbS00016137g0005.1 protein NbS00028062g0002.1 protein NbS00053759g0003.1 protein ; (*ITAG) Solyc01g057740.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00035674g0009.1 protein NbS00005357g0002.1 protein ; (*ITAG) Solyc01g096210.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:79064695-79068628 transcript_region:SL2.40ch01:79064695..79068628- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M846_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00026171g0003.1 protein NbS00036114g0002.1 protein NbS00036114g0003.1 protein NbS00019884g0007.1 protein NbS00026651g0003.1 protein NbS00028777g0001.1 protein NbS00022778g0004.1 protein NbS00025976g0001.1 protein NbS00005982g0006.1 protein NbS00036302g0004.1 protein NbS00050517g0006.1 protein NbS00016559g0011.1 protein NbS00013147g0001.1 protein NbS00006021g0008.1 protein NbS00060835g0001.1 protein NbS00000284g0006.1 protein NbS00000284g0008.1 protein NbS00008110g0005.1 protein NbS00006320g0001.1 protein ; (*GB) gi|85069279|gb|ABC69711.1| (e_value=8e-49) auxin response factor 2 [Solanum lycopersicum];; (*SWP) sp|Q94JM3|ARFB_ARATH (e_value=9e-41) Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2;; (*TAIR) AT5G62000.3 (e_value=7e-42) | Symbols: ARF2, ARF1-BP, HSS, ORE14 | auxin response factor 2 | chr5:24910859-24914680 FORWARD LENGTH=859;; (*ITAG) Solyc12g042070.1.1 (e_value=6e-55) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42539933-42544628 transcript_region:SL2.40ch12:42539933..42544628- go_terms:GO:0005634,GO:0006355,GO:0046983 functional_description:"Auxin response factor 2 (AHRD V1 ***- Q2LAJ3_SOLLC); contains Interpro domain(s) IPR010525 Auxin response factor "; GO:0005634,GO:0006355,GO:0046983 NbS00012899g0008.1 protein NbS00015122g0003.1 protein ; (*GB) gi|224065605|ref|XP_002301880.1| (e_value=5e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT2G39970.1 (e_value=4e-13) | Symbols: | Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331;; (*ITAG) Solyc04g005650.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:419666-420718 transcript_region:SL2.40ch04:419666..420718- go_terms:GO:0005515,GO:0051724 functional_description:"Mitochondrial carrier family (AHRD V1 ***- C1MWU5_MICPS); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0005515,GO:0051724 NbS00003359g0106.1 protein NbS00003359g0302.1 protein NbS00003359g0405.1 protein NbS00003359g0406.1 protein NbS00008139g0007.1 protein NbS00059635g0002.1 protein NbS00012994g0004.1 protein NbS00012994g0204.1 protein NbS00012994g0207.1 protein NbS00036628g0002.1 protein ; (*ITAG) Solyc07g056370.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:61564273-61568561 transcript_region:SL2.40ch07:61564273..61568561+ functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00012843g0003.1 protein ; (*ITAG) Solyc04g081890.1.1 (e_value=5e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63347131-63347535 transcript_region:SL2.40ch04:63347131..63347535+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00044527g0001.1 protein NbS00053911g0002.1 protein NbS00001099g0002.1 protein NbS00001099g0005.1 protein NbS00048804g0005.1 protein NbS00022738g0003.1 protein NbS00041705g0003.1 protein NbS00013102g0004.1 protein NbS00013102g0111.1 protein NbS00013102g0112.1 protein NbS00010787g0106.1 protein NbS00049804g0005.1 protein NbS00049804g0006.1 protein NbS00049804g0007.1 protein NbS00025629g0009.1 protein NbS00030583g0005.1 protein NbS00003548g0004.1 protein ; (*ITAG) Solyc05g008920.2.1 (e_value=2e-31) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00052826g0007.1 protein NbS00031370g0105.1 protein NbS00031370g0107.1 protein NbS00031370g0109.1 protein NbS00031370g0110.1 protein NbS00033305g0001.1 protein NbS00015999g0005.1 protein NbS00015080g0010.1 protein NbS00021514g0017.1 protein NbS00007439g0013.1 protein NbS00007439g0014.1 protein ; (*GB) gi|3913240|sp|O24133.1|CHLD_TOBAC (e_value=7e-90) RecName: Full=Magnesium-chelatase subunit chlD, chloroplastic; Short=Mg-chelatase subunit D; AltName: Full=Mg-protoporphyrin IX chelatase; Flags: Precursor;; (*SWP) sp|O24133|CHLD_TOBAC (e_value=2e-91) Magnesium-chelatase subunit chlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1;; (*TAIR) AT1G08520.1 (e_value=2e-41) | Symbols: ALB1, ALB-1V, V157, PDE166, CHLD | ALBINA 1 | chr1:2696538-2700819 FORWARD LENGTH=760;; (*ITAG) Solyc04g015490.2.1 (e_value=6e-68) genomic_reference:SL2.40ch04 gene_region:5692397-5708956 transcript_region:SL2.40ch04:5692397..5708956+ go_terms:GO:0017111,GO:0015995 functional_description:"Magnesium chelatase subunit D (AHRD V1 *-*- A8I531_CHLRE); contains Interpro domain(s) IPR011776 Magnesium chelatase, ATPase subunit D "; GO:0017111,GO:0015995 NbS00007439g0016.1 protein NbS00007439g0009.1 protein NbS00007439g0010.1 protein NbS00019817g0006.1 protein NbS00019817g0007.1 protein NbS00018482g0002.1 protein NbS00018482g0003.1 protein NbS00010287g0011.1 protein NbS00010287g0009.1 protein NbS00017602g0102.1 protein NbS00019660g0002.1 protein NbC26261143g0004.1 protein NbC26261143g0005.1 protein NbS00002154g0004.1 protein NbC23802725g0001.1 protein ; (*GB) gi|356543500|ref|XP_003540198.1| (e_value=5e-43) PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=5e-43) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=4e-44) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc06g074940.2.1 (e_value=2e-46) genomic_reference:SL2.40ch06 gene_region:42833203-42837088 transcript_region:SL2.40ch06:42833203..42837088+ go_terms:GO:0042626 functional_description:"ATP-binding cassette protein (AHRD V1 ***- Q5A2T2_CANAL); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00002395g0005.1 protein NbS00060097g0003.1 protein NbS00039649g0003.1 protein ; (*GB) gi|304304318|gb|ADM21465.1| (e_value=3e-16) alpha-dioxygenase 2 [Nicotiana attenuata];; (*TAIR) AT1G73680.2 (e_value=9e-14) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=640;; (*ITAG) Solyc03g119060.2.1 (e_value=2e-16) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00039649g0005.1 protein NbS00021823g0004.1 protein ; (*ITAG) Solyc03g032190.2.1 (e_value=1e-15) genomic_reference:SL2.40ch03 gene_region:8971181-8974776 transcript_region:SL2.40ch03:8971181..8974776+ go_terms:GO:0004721,GO:0016538 functional_description:"Cyclin B2 (AHRD V1 **** Q9XGI1_SOLLC); contains Interpro domain(s) IPR014400 Cyclin, A/B/D/E "; GO:0004721,GO:0016538 NbS00029589g0003.1 protein ; (*GB) gi|48057665|gb|AAT39964.1| (e_value=4e-21) Putative gag polyprotein, identical [Solanum demissum]; NbS00029589g0006.1 protein NbS00029589g0008.1 protein NbS00061559g0003.1 protein NbS00011734g0005.1 protein NbS00010289g0111.1 protein NbS00049584g0005.1 protein NbS00040881g0004.1 protein NbS00040881g0005.1 protein NbC26159273g0001.1 protein NbS00001755g0103.1 protein NbS00052858g0002.1 protein NbS00001403g0011.1 protein NbS00001403g0010.1 protein NbS00007518g0008.1 protein NbS00008940g0002.1 protein ; (*GB) gi|297746209|emb|CBI16265.3| (e_value=9e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g005000.2.1 (e_value=5e-31) genomic_reference:SL2.40ch06 gene_region:3688-7998 transcript_region:SL2.40ch06:3688..7998+ go_terms:GO:0008270 functional_description:"IBR finger domain-containing protein (AHRD V1 *--- C1GML6_PARBD); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00023154g0003.1 protein NbS00023154g0004.1 protein NbS00023154g0005.1 protein NbS00023154g0006.1 protein NbS00023987g0002.1 protein NbC23305291g0001.1 protein ; (*GB) gi|255549890|ref|XP_002515996.1| (e_value=1e-34) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9C5H4|Y3627_ARATH (e_value=9e-31) VHS domain-containing protein At3g16270 OS=Arabidopsis thaliana GN=At3g16270 PE=1 SV=1;; (*TAIR) AT3G16270.1 (e_value=7e-32) | Symbols: | ENTH/VHS family protein | chr3:5513701-5516540 FORWARD LENGTH=690;; (*ITAG) Solyc04g047770.2.1 (e_value=5e-39) genomic_reference:SL2.40ch04 gene_region:36799316-36804243 transcript_region:SL2.40ch04:36799316..36804243+ go_terms:GO:0006886 functional_description:"VHS domain-containing protein At3g16270 (AHRD V1 **-- Y3627_ARATH); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0006886 NbS00016732g0101.1 protein NbS00036759g0003.1 protein NbS00045065g0002.1 protein NbS00013173g0002.1 protein NbS00024285g0011.1 protein NbS00024285g0006.1 protein NbS00024285g0008.1 protein NbS00044300g0003.1 protein ; (*GB) gi|296086269|emb|CBI31710.3| (e_value=3e-79) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=2e-52) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=1e-53) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc04g016540.1.1 (e_value=1e-101) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00010446g0005.1 protein NbS00039791g0003.1 protein NbS00010155g0007.1 protein NbS00010155g0008.1 protein NbS00050821g0003.1 protein NbS00044829g0002.1 protein NbS00044829g0003.1 protein NbS00011185g0004.1 protein ; (*GB) gi|356525423|ref|XP_003531324.1| (e_value=3e-13) PREDICTED: uncharacterized protein At3g49055-like [Glycine max];; (*ITAG) Solyc05g013780.2.1 (e_value=5e-23) genomic_reference:SL2.40ch05 gene_region:7090546-7096093 transcript_region:SL2.40ch05:7090546..7096093+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011361g0002.1 protein NbS00029508g0002.1 protein ; (*ITAG) Solyc03g007490.2.1 (e_value=2e-19) genomic_reference:SL2.40ch03 gene_region:2070713-2072278 transcript_region:SL2.40ch03:2070713..2072278+ functional_description:"Kinesin like protein (AHRD V1 ***- O23274_ARATH)"; NbS00009299g0004.1 protein ; (*GB) gi|289540934|gb|ADD09605.1| (e_value=8e-74) SH3 domain-containing protein [Trifolium repens];; (*TAIR) AT4G34660.1 (e_value=3e-65) | Symbols: | SH3 domain-containing protein | chr4:16545595-16548294 REVERSE LENGTH=368;; (*ITAG) Solyc01g110300.2.1 (e_value=2e-85) genomic_reference:SL2.40ch01 gene_region:88788002-88793586 transcript_region:SL2.40ch01:88788002..88793586- go_terms:GO:0030276 functional_description:"Clathrin binding protein (AHRD V1 **-* B6STF7_MAIZE); contains Interpro domain(s) IPR001452 Src homology-3 domain "; GO:0030276 NbS00008616g0005.1 protein NbS00017518g0006.1 protein NbS00048124g0002.1 protein NbC26060097g0002.1 protein ; (*GB) gi|297735556|emb|CBI18050.3| (e_value=6e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G51620.2 (e_value=1e-20) | Symbols: | PAP/OAS1 substrate-binding domain superfamily | chr3:19143859-19147944 FORWARD LENGTH=829;; (*ITAG) Solyc09g018160.2.1 (e_value=6e-28) genomic_reference:SL2.40ch09 gene_region:13379149-13391907 transcript_region:SL2.40ch09:13379149..13391907+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00005893g0012.1 protein NbS00005893g0005.1 protein ; (*ITAG) Solyc05g047650.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:58282178-58282591 transcript_region:SL2.40ch05:58282178..58282591- functional_description:"Unknown Protein (AHRD V1)"; NbS00005893g0008.1 protein ; (*GB) gi|359473151|ref|XP_002282388.2| (e_value=1e-20) PREDICTED: probable protein phosphatase 2C 14 [Vitis vinifera]; NbS00019619g0002.1 protein ; (*GB) gi|357487581|ref|XP_003614078.1| (e_value=6e-14) HGWP repeat containing protein-like protein [Medicago truncatula]; NbS00028203g0003.1 protein NbS00028203g0004.1 protein NbS00028203g0005.1 protein NbS00010008g0103.1 protein NbS00035792g0012.1 protein NbS00025630g0001.1 protein NbS00026254g0007.1 protein NbS00002461g0006.1 protein NbS00002461g0009.1 protein NbS00021219g0006.1 protein ; (*GB) gi|255584015|ref|XP_002532753.1| (e_value=1e-66) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G20660.1 (e_value=4e-65) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:6986402-6990947 FORWARD LENGTH=910;; (*ITAG) Solyc04g025260.2.1 (e_value=4e-86) genomic_reference:SL2.40ch04 gene_region:18443059-18472464 transcript_region:SL2.40ch04:18443059..18472464+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_HUMAN); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00043286g0004.1 protein NbS00031332g0005.1 protein NbS00031332g0009.1 protein NbS00031332g0109.1 protein NbS00001793g0005.1 protein ; (*GB) gi|224093190|ref|XP_002309826.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5G1S8|PP241_ARATH (e_value=7e-18) Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2;; (*TAIR) AT3G18110.1 (e_value=6e-19) | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) superfamily protein | chr3:6204940-6209691 REVERSE LENGTH=1440;; (*ITAG) Solyc03g096830.2.1 (e_value=9e-23) genomic_reference:SL2.40ch03 gene_region:52640192-52646159 transcript_region:SL2.40ch03:52640192..52646159- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023191g0007.1 protein NbS00022319g0005.1 protein ; (*GB) gi|255585628|ref|XP_002533501.1| (e_value=5e-18) NADH dehydrogenase, putative [Ricinus communis];; (*SWP) sp|P0CD27|NU2C2_PELHO (e_value=3e-18) NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Pelargonium hortorum GN=ndhB2 PE=3 SV=1;; (*ITAG) ATCG01250.1 (e_value=2e-18) | Symbols: NDHB.2 | NADH-Ubiquinone/plastoquinone (complex I) protein | chrC:141854-143708 FORWARD LENGTH=389;; (*ITAG) Solyc01g007660.2.1 (e_value=6e-20) genomic_reference:SL2.40ch01 gene_region:1891437-1894223 transcript_region:SL2.40ch01:1891437..1894223- go_terms:GO:0055114 functional_description:"NAD(P)H-quinone oxidoreductase subunit 2 chloroplastic (AHRD V1 ***- D3WB81_9BORA); contains Interpro domain(s) IPR010096 NADH-quinone oxidoreductase, chain N "; GO:0055114 NbS00000983g0003.1 protein NbS00000983g0004.1 protein NbS00026567g0004.1 protein NbS00002037g0002.1 protein NbS00022657g0003.1 protein NbC26147274g0001.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-23) RNase H family protein [Solanum demissum]; NbS00005784g0005.1 protein NbS00009389g0001.1 protein NbS00009389g0002.1 protein ; (*GB) gi|224142397|ref|XP_002324545.1| (e_value=6e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q56X72|RTNLS_ARATH (e_value=1e-20) Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2;; (*TAIR) AT5G58000.1 (e_value=1e-21) | Symbols: | Reticulon family protein | chr5:23477416-23479496 FORWARD LENGTH=487;; (*ITAG) Solyc07g005470.2.1 (e_value=1e-36) genomic_reference:SL2.40ch07 gene_region:374914-379875 transcript_region:SL2.40ch07:374914..379875- go_terms:GO:0005783 functional_description:"Reticulon-like protein B21 (AHRD V1 *-*- RTNLS_ARATH); contains Interpro domain(s) IPR003388 Reticulon "; GO:0005783 NbS00007567g0010.1 protein ; (*GB) gi|357436151|ref|XP_003588351.1| (e_value=4e-16) Maturase [Medicago truncatula]; NbS00007667g0004.1 protein NbS00012499g0002.1 protein NbS00020610g0005.1 protein NbS00020610g0007.1 protein NbS00020197g0003.1 protein ; (*GB) gi|15144510|gb|AAK84477.1| (e_value=6e-42) putative centromere protein [Solanum lycopersicum];; (*TAIR) AT4G38070.1 (e_value=7e-11) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17876535-17882569 FORWARD LENGTH=1513;; (*ITAG) Solyc11g010620.1.1 (e_value=1e-44) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbS00026175g0003.1 protein NbS00032692g0001.1 protein NbS00032692g0002.1 protein NbS00032692g0004.1 protein NbC25620360g0001.1 protein ; (*ITAG) Solyc08g061450.1.1 (e_value=3e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001567g0011.1 protein NbS00001567g0013.1 protein NbS00001567g0006.1 protein NbS00001567g0009.1 protein NbS00018893g0005.1 protein NbS00018893g0007.1 protein NbS00002458g0016.1 protein NbS00002458g0023.1 protein NbS00002458g0024.1 protein NbS00002458g0028.1 protein ; (*ITAG) Solyc03g007840.1.1 (e_value=5e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:2384211-2386244 transcript_region:SL2.40ch03:2384211..2386244- go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MBT1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00002458g0029.1 protein NbS00004755g0007.1 protein NbS00000782g0002.1 protein NbS00014220g0002.1 protein NbS00012423g0010.1 protein NbS00033660g0005.1 protein NbS00024968g0005.1 protein NbS00024968g0010.1 protein NbS00001501g0009.1 protein NbS00012202g0004.1 protein NbS00012202g0005.1 protein NbS00040057g0001.1 protein NbS00040057g0003.1 protein NbS00002078g0011.1 protein NbS00002078g0015.1 protein NbS00047652g0004.1 protein NbS00018025g0013.1 protein NbS00018025g0009.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042420.1.1 (e_value=9e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43129413-43132685 transcript_region:SL2.40ch12:43129413..43132685- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00027172g0003.1 protein NbS00018983g0011.1 protein NbS00018983g0014.1 protein NbS00018983g0020.1 protein NbS00018983g0009.1 protein NbS00013369g0001.1 protein NbS00040824g0002.1 protein NbS00008329g0001.1 protein ; (*GB) gi|297850200|ref|XP_002892981.1| (e_value=5e-40) hypothetical protein ARALYDRAFT_889219 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G18060.1 (e_value=2e-41) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6212065-6213314 REVERSE LENGTH=226;; (*ITAG) Solyc06g069030.2.1 (e_value=3e-35) genomic_reference:SL2.40ch06 gene_region:39227428-39229756 transcript_region:SL2.40ch06:39227428..39229756+ functional_description:"PAP fibrillin domain containing protein expressed (AHRD V1 **-- D8L9T8_WHEAT)"; NbS00043597g0002.1 protein NbS00010500g0103.1 protein NbS00010500g0110.1 protein NbS00044869g0002.1 protein ; (*GB) gi|255544738|ref|XP_002513430.1| (e_value=7e-14) DNA binding protein, putative [Ricinus communis];; (*TAIR) AT3G60110.1 (e_value=8e-15) | Symbols: | DNA-binding bromodomain-containing protein | chr3:22197993-22201159 FORWARD LENGTH=641;; (*ITAG) Solyc01g006470.1.1 (e_value=1e-39) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:1070708-1073203 transcript_region:SL2.40ch01:1070708..1073203- functional_description:"Bromodomain protein (AHRD V1 *-*- B9GYV6_POPTR); contains Interpro domain(s) IPR001487 Bromodomain "; NbS00030879g0006.1 protein NbS00004801g0006.1 protein ; (*GB) gi|225435307|ref|XP_002285127.1| (e_value=1e-13) PREDICTED: ruvB-like 1-like [Vitis vinifera];; (*SWP) sp|Q5A0W7|RUVB1_CANAL (e_value=1e-14) RuvB-like helicase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RVB1 PE=3 SV=1;; (*TAIR) AT5G22330.1 (e_value=1e-15) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458;; (*ITAG) Solyc06g062350.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:35707819-35712564 transcript_region:SL2.40ch06:35707819..35712564- go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00004801g0008.1 protein NbS00021285g0004.1 protein NbS00022341g0011.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=3e-27) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00022341g0008.1 protein NbS00027924g0007.1 protein NbS00010835g0006.1 protein NbS00000328g0008.1 protein NbS00000328g0010.1 protein NbS00019105g0001.1 protein NbS00015817g0011.1 protein NbS00044191g0004.1 protein NbS00029669g0004.1 protein NbC23982713g0001.1 protein ; (*GB) gi|225427286|ref|XP_002281714.1| (e_value=3e-36) PREDICTED: uncharacterized protein HI_0488 [Vitis vinifera];; (*TAIR) AT2G38740.1 (e_value=3e-32) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:16194639-16195995 REVERSE LENGTH=244;; (*ITAG) Solyc08g077350.2.1 (e_value=2e-46) genomic_reference:SL2.40ch08 gene_region:58402411-58405715 transcript_region:SL2.40ch08:58402411..58405715+ go_terms:GO:0016787 functional_description:"HAD-superfamily hydrolase subfamily IA variant 3 (AHRD V1 **-* B2IYD2_NOSP7); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787 NbS00023026g0005.1 protein ; (*ITAG) Solyc06g054020.2.1 (e_value=7e-30) genomic_reference:SL2.40ch06 gene_region:33384024-33389471 transcript_region:SL2.40ch06:33384024..33389471+ go_terms:GO:0005515 functional_description:"Helicase (AHRD V1 *--- B3LLX3_YEAS1)"; GO:0005515 NbS00017515g0007.1 protein NbS00018798g0001.1 protein NbS00018798g0003.1 protein NbS00030975g0007.1 protein NbS00046906g0004.1 protein NbS00046906g0005.1 protein NbC23458119g0001.1 protein ; (*ITAG) Solyc01g091460.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:76828686-76841837 transcript_region:SL2.40ch01:76828686..76841837+ go_terms:GO:0005086 functional_description:"ARF guanine-nucleotide exchange factor 2 (AHRD V1 *--* GEA2_YEAST); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00012849g0003.1 protein NbS00012198g0002.1 protein ; (*GB) gi|356548445|ref|XP_003542612.1| (e_value=4e-33) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max];; (*TAIR) AT4G31020.1 (e_value=4e-34) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:15108832-15110079 REVERSE LENGTH=294;; (*ITAG) Solyc07g005130.2.1 (e_value=9e-46) genomic_reference:SL2.40ch07 gene_region:145544-151215 transcript_region:SL2.40ch07:145544..151215+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00026460g0010.1 protein ; (*GB) gi|359480159|ref|XP_002276396.2| (e_value=3e-37) PREDICTED: protein fat-free homolog [Vitis vinifera];; (*TAIR) AT4G02030.1 (e_value=1e-30) | Symbols: | Vps51/Vps67 family (components of vesicular transport) protein | chr4:892262-897175 FORWARD LENGTH=780;; (*ITAG) Solyc01g079490.2.1 (e_value=2e-64) genomic_reference:SL2.40ch01 gene_region:71038694-71056506 transcript_region:SL2.40ch01:71038694..71056506+ go_terms:GO:0042802 functional_description:"Protein fat-free homolog (AHRD V1 ***- FFR_DICDI); contains Interpro domain(s) IPR014812 Vps51/Vps67 "; GO:0042802 NbS00025550g0008.1 protein NbS00025550g0010.1 protein NbS00024482g0003.1 protein NbS00024482g0007.1 protein NbS00041292g0002.1 protein NbS00042932g0002.1 protein NbS00003383g0007.1 protein NbS00020997g0002.1 protein NbS00036769g0002.1 protein NbS00005104g0018.1 protein NbS00005104g0007.1 protein NbS00002225g0013.1 protein ; (*GB) gi|224111880|ref|XP_002316010.1| (e_value=7e-30) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q69XM6|C7344_ORYSJ (e_value=6e-20) Cytochrome P450 734A4 OS=Oryza sativa subsp. japonica GN=CYP734A4 PE=2 SV=1;; (*TAIR) AT2G46960.1 (e_value=3e-24) | Symbols: CYP709B1 | cytochrome P450, family 709, subfamily B, polypeptide 1 | chr2:19292295-19293765 REVERSE LENGTH=403;; (*ITAG) Solyc05g011940.2.1 (e_value=2e-28) genomic_reference:SL2.40ch05 gene_region:5169868-5171876 transcript_region:SL2.40ch05:5169868..5171876- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00031823g0007.1 protein NbS00035806g0012.1 protein NbC24431478g0001.1 protein ; (*GB) gi|359477550|ref|XP_003631994.1| (e_value=2e-24) PREDICTED: uncharacterized protein LOC100254535 [Vitis vinifera];; (*TAIR) AT3G22790.1 (e_value=3e-21) | Symbols: | Kinase interacting (KIP1-like) family protein | chr3:8052446-8057888 REVERSE LENGTH=1728;; (*ITAG) Solyc09g082510.2.1 (e_value=2e-44) genomic_reference:SL2.40ch09 gene_region:63633907-63641296 transcript_region:SL2.40ch09:63633907..63641296+ functional_description:"Kinase interacting family protein (AHRD V1 **-- D7KCB2_ARALY); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00056826g0001.1 protein NbS00007955g0011.1 protein NbS00007955g0009.1 protein NbS00040024g0003.1 protein NbS00040024g0005.1 protein NbS00055757g0002.1 protein ; (*GB) gi|224125086|ref|XP_002329890.1| (e_value=6e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C5X3|KEULE_ARATH (e_value=2e-48) SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2;; (*TAIR) AT1G12360.1 (e_value=2e-49) | Symbols: KEU | Sec1/munc18-like (SM) proteins superfamily | chr1:4201172-4206144 FORWARD LENGTH=666;; (*ITAG) Solyc08g079520.2.1 (e_value=8e-70) genomic_reference:SL2.40ch08 gene_region:60189768-60206202 transcript_region:SL2.40ch08:60189768..60206202+ go_terms:GO:0017075 functional_description:"Sec1-4 syntaxin-binding protein (AHRD V1 **-* Q3SEP7_PARTE); contains Interpro domain(s) IPR001619 Sec1-like protein "; GO:0017075 NbS00023387g0002.1 protein NbS00028435g0005.1 protein NbS00028435g0007.1 protein NbS00015177g0004.1 protein NbS00009703g0002.1 protein NbS00047798g0001.1 protein NbS00008170g0005.1 protein NbS00034134g0003.1 protein NbS00034134g0004.1 protein NbS00008833g0108.1 protein NbS00026801g0005.1 protein NbS00026801g0007.1 protein NbS00037414g0002.1 protein NbS00044586g0003.1 protein NbS00045601g0004.1 protein NbS00002963g0008.1 protein NbS00014857g0004.1 protein NbS00014857g0006.1 protein NbS00037184g0004.1 protein ; (*GB) gi|296082911|emb|CBI22212.3| (e_value=4e-17) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FJL0|SMC4_ARATH (e_value=3e-17) Structural maintenance of chromosomes protein 4 OS=Arabidopsis thaliana GN=SMC4 PE=2 SV=1;; (*TAIR) AT5G48600.2 (e_value=2e-18) | Symbols: SMC3 | structural maintenance of chromosome 3 | chr5:19701908-19709091 FORWARD LENGTH=1244;; (*ITAG) Solyc02g087980.2.1 (e_value=6e-21) genomic_reference:SL2.40ch02 gene_region:44789160-44798531 transcript_region:SL2.40ch02:44789160..44798531+ go_terms:GO:0046982 functional_description:"Structural maintenance of chromosomes protein 4 (AHRD V1 **-- D8TXU8_VOLCA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0046982 NbS00008360g0005.1 protein NbS00001685g0015.1 protein NbS00001685g0006.1 protein ; (*GB) gi|350538213|ref|NP_001234076.1| (e_value=4e-63) transaldolase ToTAL2 [Solanum lycopersicum];; (*TAIR) AT1G12230.2 (e_value=3e-52) | Symbols: | Aldolase superfamily protein | chr1:4148050-4150708 FORWARD LENGTH=427;; (*ITAG) Solyc08g079070.2.1 (e_value=2e-70) genomic_reference:SL2.40ch08 gene_region:59880581-59886513 transcript_region:SL2.40ch08:59880581..59886513+ go_terms:GO:0004801 functional_description:"Transaldolase (AHRD V1 **** D6N3G8_GOSHI); contains Interpro domain(s) IPR001585 Transaldolase "; GO:0004801 NbS00024319g0004.1 protein NbS00024319g0009.1 protein NbS00048299g0002.1 protein NbS00005836g0003.1 protein NbS00019609g0004.1 protein NbS00020891g0005.1 protein NbS00020891g0006.1 protein NbS00012687g0001.1 protein ; (*GB) gi|224068845|ref|XP_002326214.1| (e_value=7e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q54S79|WDR3_DICDI (e_value=1e-12) WD repeat-containing protein 3 homolog OS=Dictyostelium discoideum GN=wdr3 PE=3 SV=1;; (*TAIR) AT3G21540.1 (e_value=6e-29) | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:7586100-7590856 REVERSE LENGTH=955;; (*ITAG) Solyc10g039190.1.1 (e_value=3e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:20678709-20686367 transcript_region:SL2.40ch10:20678709..20686367+ go_terms:GO:0030515 functional_description:"WD-repeat-containing protein (AHRD V1 **-- A8NX65_COPC7); contains Interpro domain(s) IPR007148 Small-subunit processome, Utp12 "; GO:0030515 NbS00018542g0002.1 protein NbS00038615g0005.1 protein NbS00025931g0002.1 protein ; (*ITAG) Solyc03g113710.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:57830474-57833099 transcript_region:SL2.40ch03:57830474..57833099- go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00037788g0003.1 protein NbS00003017g0109.1 protein NbS00003017g0110.1 protein NbS00061411g0003.1 protein NbS00055740g0002.1 protein ; (*GB) gi|225433351|ref|XP_002282738.1| (e_value=1e-35) PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera];; (*TAIR) AT3G23980.1 (e_value=2e-33) | Symbols: BLI, KOS1 | BLISTER | chr3:8662818-8667440 REVERSE LENGTH=714;; (*ITAG) Solyc09g091120.2.1 (e_value=7e-45) genomic_reference:SL2.40ch09 gene_region:65814321-65825428 transcript_region:SL2.40ch09:65814321..65825428- functional_description:"Genomic DNA chromosome 3 BAC clone F14O13 (AHRD V1 *-*- Q9LIQ9_ARATH)"; NbS00025128g0004.1 protein NbS00058490g0002.1 protein ; (*GB) gi|225453378|ref|XP_002271102.1| (e_value=2e-21) PREDICTED: GRAM domain-containing protein 1A [Vitis vinifera];; (*TAIR) AT1G02120.1 (e_value=3e-13) | Symbols: VAD1 | GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598;; (*ITAG) Solyc01g090230.2.1 (e_value=1e-61) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00036585g0004.1 protein NbS00036585g0005.1 protein NbS00002690g0012.1 protein NbS00002690g0015.1 protein ; (*GB) gi|225427599|ref|XP_002270781.1| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100264895 [Vitis vinifera];; (*TAIR) AT4G19160.3 (e_value=3e-18) | Symbols: | unknown protein; Has 315 Blast hits to 315 proteins in 152 species: Archae - 0; Bacteria - 250; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:10477521-10479947 FORWARD LENGTH=441;; (*ITAG) Solyc08g075520.2.1 (e_value=8e-34) genomic_reference:SL2.40ch08 gene_region:56838057-56842836 transcript_region:SL2.40ch08:56838057..56842836- functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00002690g0007.1 protein NbS00003907g0011.1 protein NbS00005403g0005.1 protein NbS00009062g0010.1 protein NbS00022728g0003.1 protein ; (*GB) gi|332322086|emb|CCA65978.1| (e_value=1e-24) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc05g021350.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00044420g0001.1 protein NbS00008541g0002.1 protein ; (*GB) gi|224069094|ref|XP_002326273.1| (e_value=6e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=7e-14) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc06g060520.1.1 (e_value=9e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34932821-34933723 transcript_region:SL2.40ch06:34932821..34933723- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbC24739682g0001.1 protein ; (*GB) gi|147778329|emb|CAN69561.1| (e_value=2e-24) hypothetical protein VITISV_040028 [Vitis vinifera];; (*SWP) sp|Q94JW8|SPL6_ARATH (e_value=2e-21) Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2;; (*TAIR) AT1G69170.1 (e_value=2e-22) | Symbols: | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr1:26005626-26007041 FORWARD LENGTH=405;; (*ITAG) Solyc03g114850.2.1 (e_value=3e-29) genomic_reference:SL2.40ch03 gene_region:58796755-58802237 transcript_region:SL2.40ch03:58796755..58802237+ go_terms:GO:0005634 functional_description:"Squamosa promoter binding protein 3 (AHRD V1 *-*- Q1MU26_PHYPA); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0005634 NbS00007113g0011.1 protein NbS00007113g0005.1 protein NbS00026482g0002.1 protein NbS00020186g0003.1 protein ; (*GB) gi|356572190|ref|XP_003554253.1| (e_value=3e-18) PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Glycine max];; (*TAIR) AT3G63200.1 (e_value=8e-17) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=3e-22) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00014325g0003.1 protein NbS00005317g0104.1 protein NbS00016789g0005.1 protein NbS00000632g0005.1 protein NbS00000632g0006.1 protein ; (*GB) gi|70779014|gb|AAZ08051.1| (e_value=1e-41) wax synthase [Petunia x hybrida];; (*TAIR) AT5G12420.1 (e_value=3e-14) | Symbols: | O-acyltransferase (WSD1-like) family protein | chr5:4024568-4026715 REVERSE LENGTH=480;; (*ITAG) Solyc10g009430.2.1 (e_value=8e-36) genomic_reference:SL2.40ch10 gene_region:3495360-3501746 transcript_region:SL2.40ch10:3495360..3501746+ functional_description:"Diacylglycerol O-acyltransferase (AHRD V1 ***- Q124V7_POLSJ); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00000632g0008.1 protein NbS00000632g0009.1 protein NbS00005177g0002.1 protein NbS00005177g0004.1 protein NbS00020554g0003.1 protein NbS00020554g0004.1 protein NbS00002763g0013.1 protein NbS00002763g0014.1 protein NbS00002763g0017.1 protein NbS00012401g0004.1 protein NbS00033598g0003.1 protein NbS00033598g0007.1 protein NbS00043481g0004.1 protein NbS00018320g0004.1 protein NbS00025284g0004.1 protein NbS00013196g0006.1 protein NbS00012629g0002.1 protein NbS00000766g0003.1 protein NbS00015889g0003.1 protein NbS00005510g0004.1 protein NbS00041363g0005.1 protein NbS00008247g0002.1 protein NbS00024085g0002.1 protein NbS00003952g0003.1 protein ; (*GB) gi|255584702|ref|XP_002533072.1| (e_value=5e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G03290.2 (e_value=2e-31) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.2). | chr1:807970-810680 FORWARD LENGTH=571;; (*ITAG) Solyc09g064860.2.1 (e_value=3e-66) genomic_reference:SL2.40ch09 gene_region:57942081-57949333 transcript_region:SL2.40ch09:57942081..57949333- functional_description:"CUE domain containing protein expressed (AHRD V1 *-*- Q7XG35_ORYSJ); contains Interpro domain(s) IPR003892 Ubiquitin system component Cue "; NbS00003952g0004.1 protein NbS00015658g0003.1 protein NbS00047990g0004.1 protein NbS00020087g0006.1 protein NbS00020087g0009.1 protein NbS00013932g0011.1 protein NbS00016838g0007.1 protein NbS00004456g0007.1 protein NbS00004456g0009.1 protein NbS00025359g0006.1 protein NbS00006309g0012.1 protein NbS00007871g0111.1 protein NbS00007871g0107.1 protein NbS00015586g0004.1 protein NbS00044632g0007.1 protein NbS00001167g0004.1 protein NbS00028210g0112.1 protein NbS00028210g0113.1 protein NbS00028210g0115.1 protein NbS00028210g0116.1 protein NbS00028210g0117.1 protein NbS00045444g0003.1 protein NbS00041028g0002.1 protein ; (*ITAG) Solyc02g071490.2.1 (e_value=2e-14) genomic_reference:SL2.40ch02 gene_region:35483359-35485607 transcript_region:SL2.40ch02:35483359..35485607- go_terms:GO:0051213 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0051213 NbS00034285g0005.1 protein NbS00034285g0008.1 protein ; (*GB) gi|147783452|emb|CAN75210.1| (e_value=9e-32) hypothetical protein VITISV_005867 [Vitis vinifera]; NbS00018124g0005.1 protein NbS00037721g0002.1 protein NbS00001485g0002.1 protein NbS00005126g0009.1 protein NbS00005126g0010.1 protein NbS00034614g0010.1 protein ; (*GB) gi|224128246|ref|XP_002320279.1| (e_value=5e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYZ3|PME53_ARATH (e_value=3e-24) Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1;; (*TAIR) AT5G19730.1 (e_value=3e-25) | Symbols: | Pectin lyase-like superfamily protein | chr5:6670562-6673202 FORWARD LENGTH=383;; (*ITAG) Solyc01g079180.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:70787714-70790317 transcript_region:SL2.40ch01:70787714..70790317+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8RVT4_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00018871g0003.1 protein ; (*GB) gi|255546672|ref|XP_002514395.1| (e_value=2e-25) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G07930.3 (e_value=6e-28) | Symbols: | DNA glycosylase superfamily protein | chr3:2526720-2528416 FORWARD LENGTH=445;; (*ITAG) Solyc02g021100.2.1 (e_value=2e-64) genomic_reference:SL2.40ch02 gene_region:12276103-12278400 transcript_region:SL2.40ch02:12276103..12278400- go_terms:GO:0006284,GO:0006281 functional_description:"Methyl-CpG binding domain protein 4 (AHRD V1 *-*- Q3ZBC7_BOVIN); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0006281 NbS00016902g0208.1 protein NbS00061501g0001.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=9e-35) hypothetical protein [Cucumis melo subsp. melo]; NbS00047654g0002.1 protein NbS00003171g0003.1 protein NbS00046967g0001.1 protein NbS00046967g0002.1 protein NbS00019745g0011.1 protein NbS00033736g0003.1 protein NbS00012829g0005.1 protein NbS00012829g0007.1 protein NbS00021111g0005.1 protein NbS00019588g0004.1 protein ; (*ITAG) Solyc08g005560.2.1 (e_value=5e-21) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00019588g0005.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00055539g0001.1 protein ; (*GB) gi|224109226|ref|XP_002315128.1| (e_value=9e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT2G40390.1 (e_value=2e-27) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 75 Blast hits to 75 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:16867385-16868961 FORWARD LENGTH=496;; (*ITAG) Solyc10g018120.1.1 (e_value=3e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:6625022-6627035 transcript_region:SL2.40ch10:6625022..6627035+ functional_description:"Unknown Protein (AHRD V1)"; NbS00037897g0002.1 protein NbS00016418g0003.1 protein NbC23683935g0002.1 protein ; (*ITAG) Solyc02g061720.1.1 (e_value=9e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:27818923-27825910 transcript_region:SL2.40ch02:27818923..27825910- functional_description:"Ubiquilin-1 (AHRD V1 **-- B6T584_MAIZE); contains Interpro domain(s) IPR015496 Ubiquilin "; NbS00018686g0004.1 protein NbS00008556g0003.1 protein NbS00057280g0002.1 protein ; (*GB) gi|22857914|gb|AAL91667.1| (e_value=5e-28) pollen specific actin-depolymerizing factor 2 [Nicotiana tabacum];; (*SWP) sp|P30174|ADF_BRANA (e_value=1e-28) Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1;; (*TAIR) AT4G25590.1 (e_value=1e-29) | Symbols: ADF7 | actin depolymerizing factor 7 | chr4:13059137-13060050 REVERSE LENGTH=137;; (*ITAG) Solyc06g035980.2.1 (e_value=3e-28) genomic_reference:SL2.40ch06 gene_region:22031465-22032402 transcript_region:SL2.40ch06:22031465..22032402+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00057280g0003.1 protein NbS00030525g0004.1 protein NbS00021338g0001.1 protein NbS00007059g0002.1 protein NbS00027063g0003.1 protein NbS00009606g0003.1 protein NbS00009606g0006.1 protein NbS00009606g0007.1 protein NbS00000197g0005.1 protein NbC24986921g0002.1 protein ; (*GB) gi|224106179|ref|XP_002314074.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT5G19855.1 (e_value=5e-17) | Symbols: | Chaperonin-like RbcX protein | chr5:6712166-6713445 REVERSE LENGTH=203;; (*ITAG) Solyc11g065740.1.1 (e_value=2e-28) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48417851-48421065 transcript_region:SL2.40ch11:48417851..48421065+ functional_description:"RbcX protein (AHRD V1 *-*- Q5W3L8_9NOST); contains Interpro domain(s) IPR003435 Chaperonin-like RbcX "; NbS00009678g0002.1 protein NbS00059670g0001.1 protein ; (*GB) gi|27544012|dbj|BAC54830.1| (e_value=1e-27) vacuolar processing enzyme-3 [Nicotiana tabacum];; (*TAIR) AT4G32940.1 (e_value=2e-13) | Symbols: GAMMA-VPE, GAMMAVPE | gamma vacuolar processing enzyme | chr4:15900557-15903161 REVERSE LENGTH=494;; (*ITAG) Solyc12g095910.1.1 (e_value=1e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63354423-63359472 transcript_region:SL2.40ch12:63354423..63359472+ go_terms:GO:0004197 functional_description:"Vacuolar processing enzyme-3 (AHRD V1 **-- Q852T0_TOBAC); contains Interpro domain(s) IPR001096 Peptidase C13, legumain "; GO:0004197 NbS00011125g0004.1 protein NbS00041757g0003.1 protein NbS00003356g0007.1 protein NbS00016738g0004.1 protein NbS00004667g0002.1 protein NbS00004667g0112.1 protein NbS00004667g0113.1 protein NbS00004667g0114.1 protein NbS00004667g0110.1 protein NbS00029613g0005.1 protein NbS00005756g0006.1 protein NbS00008101g0007.1 protein NbS00013297g0001.1 protein NbS00006452g0001.1 protein NbS00004415g0011.1 protein NbS00004415g0016.1 protein ; (*ITAG) Solyc02g064630.2.1 (e_value=5e-18) genomic_reference:SL2.40ch02 gene_region:30298568-30306185 transcript_region:SL2.40ch02:30298568..30306185+ go_terms:GO:0005634,GO:0003677,GO:0045449 functional_description:"Histone-like protein (Fragment) (AHRD V1 *--- Q93VE8_FRILI); contains Interpro domain(s) IPR005818 Histone H1/H5 "; GO:0005634,GO:0003677,GO:0045449 NbS00004415g0010.1 protein NbS00006623g0004.1 protein NbS00006623g0005.1 protein NbC25866678g0001.1 protein ; (*GB) gi|2880049|gb|AAC02743.1| (e_value=2e-14) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT2G30720.1 (e_value=4e-17) | Symbols: | Thioesterase/thiol ester dehydrase-isomerase superfamily protein | chr2:13089604-13091538 REVERSE LENGTH=455;; (*ITAG) Solyc12g019490.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10584321-10593011 transcript_region:SL2.40ch12:10584321..10593011- go_terms:GO:0016291 functional_description:"Acyl-CoA thioesterase 9 (AHRD V1 **** Q503Q9_DANRE); contains Interpro domain(s) IPR006683 Thioesterase superfamily "; GO:0016291 NbS00029693g0005.1 protein NbS00032542g0013.1 protein NbS00031423g0003.1 protein NbS00020625g0006.1 protein NbS00031717g0003.1 protein NbS00005999g0002.1 protein ; (*GB) gi|30961939|gb|AAP40021.1| (e_value=6e-14) hexokinase [Nicotiana benthamiana];; (*SWP) sp|Q9SEK2|HXK1_TOBAC (e_value=7e-15) Hexokinase-1 OS=Nicotiana tabacum GN=HXK1 PE=2 SV=1;; (*ITAG) Solyc03g121070.2.1 (e_value=9e-15) genomic_reference:SL2.40ch03 gene_region:63353339-63358640 transcript_region:SL2.40ch03:63353339..63358640- go_terms:GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q8H0Q2_SOLLC); contains Interpro domain(s) IPR019807 Hexokinase, conserved site IPR001312 Hexokinase "; GO:0004340 NbS00027450g0003.1 protein NbS00026857g0007.1 protein NbC24207283g0001.1 protein ; (*GB) gi|357490095|ref|XP_003615335.1| (e_value=4e-39) E3 ubiquitin-protein ligase HUWE1 [Medicago truncatula];; (*ITAG) Solyc04g076620.2.1 (e_value=7e-51) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00023908g0001.1 protein NbS00013183g0004.1 protein NbS00004671g0004.1 protein ; (*GB) gi|147768753|emb|CAN71534.1| (e_value=6e-40) hypothetical protein VITISV_018182 [Vitis vinifera];; (*SWP) sp|Q9SZL8|FRS5_ARATH (e_value=7e-28) Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1;; (*TAIR) AT4G38180.1 (e_value=5e-29) | Symbols: FRS5 | FAR1-related sequence 5 | chr4:17906702-17909404 REVERSE LENGTH=788;; (*ITAG) Solyc01g112320.2.1 (e_value=4e-29) genomic_reference:SL2.40ch01 gene_region:90169312-90174218 transcript_region:SL2.40ch01:90169312..90174218- go_terms:GO:0008270 functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 ***- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; GO:0008270 NbS00012723g0005.1 protein NbS00005848g0005.1 protein NbS00005848g0006.1 protein NbS00005848g0008.1 protein NbS00005848g0009.1 protein NbS00009160g0005.1 protein ; (*ITAG) Solyc12g095960.1.1 (e_value=9e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63401514-63405993 transcript_region:SL2.40ch12:63401514..63405993- go_terms:GO:0051010 functional_description:"Insulin-like growth factor 2 mRNA-binding protein 2 (AHRD V1 *-** IF2B2_PONAB); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0051010 NbS00009160g0006.1 protein NbS00001918g0016.1 protein NbS00001918g0008.1 protein NbS00001918g0009.1 protein NbS00015151g0007.1 protein ; (*ITAG) Solyc05g012200.2.1 (e_value=2e-21) genomic_reference:SL2.40ch05 gene_region:5462850-5468978 transcript_region:SL2.40ch05:5462850..5468978+ go_terms:GO:0042802 functional_description:"Asparagine synthase family protein expressed (AHRD V1 ***- Q2QN88_ORYSJ); contains Interpro domain(s) IPR001962 Asparagine synthase "; GO:0042802 NbS00014718g0004.1 protein ; (*GB) gi|224100567|ref|XP_002311926.1| (e_value=8e-29) predicted protein [Populus trichocarpa];; (*TAIR) AT5G04885.1 (e_value=1e-26) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc01g009240.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:3269096-3273535 transcript_region:SL2.40ch01:3269096..3273535+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00020367g0002.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-15) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g012310.1.1 (e_value=8e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10454496-10455623 transcript_region:SL2.40ch00:10454496..10455623- go_terms:GO:0006278 functional_description:"Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) (AHRD V1 **-- PO21_NASVI); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; GO:0006278 NbS00002469g0001.1 protein NbS00016632g0001.1 protein ; (*GB) gi|359806252|ref|NP_001241213.1| (e_value=5e-21) uncharacterized protein LOC100817843 [Glycine max];; (*TAIR) AT4G35760.1 (e_value=2e-22) | Symbols: | NAD(P)H dehydrogenase (quinone)s | chr4:16942733-16944622 REVERSE LENGTH=376;; (*ITAG) Solyc02g083270.2.1 (e_value=1e-31) genomic_reference:SL2.40ch02 gene_region:41295332-41300101 transcript_region:SL2.40ch02:41295332..41300101- functional_description:"Vitamin K epoxide reductase (AHRD V1 **-- B4AXQ4_9CHRO); contains Interpro domain(s) IPR012932 Vitamin K epoxide reductase "; NbS00016632g0002.1 protein ; (*GB) gi|224133580|ref|XP_002327630.1| (e_value=3e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT4G35760.1 (e_value=3e-19) | Symbols: | NAD(P)H dehydrogenase (quinone)s | chr4:16942733-16944622 REVERSE LENGTH=376;; (*ITAG) Solyc02g083270.2.1 (e_value=3e-23) genomic_reference:SL2.40ch02 gene_region:41295332-41300101 transcript_region:SL2.40ch02:41295332..41300101- functional_description:"Vitamin K epoxide reductase (AHRD V1 **-- B4AXQ4_9CHRO); contains Interpro domain(s) IPR012932 Vitamin K epoxide reductase "; NbS00012779g0002.1 protein NbS00010463g0005.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-16) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00025557g0009.1 protein NbS00051841g0005.1 protein ; (*GB) gi|296089959|emb|CBI39778.3| (e_value=5e-39) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g018750.2.1 (e_value=2e-18) genomic_reference:SL2.40ch05 gene_region:23528108-23541786 transcript_region:SL2.40ch05:23528108..23541786+ functional_description:"Hydroxyproline-rich glycoprotein family protein-like (AHRD V1 **-- Q6EP64_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00051841g0006.1 protein NbS00009529g0005.1 protein ; (*ITAG) Solyc01g056490.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:47405128-47410909 transcript_region:SL2.40ch01:47405128..47410909+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00003112g0001.1 protein NbS00016501g0002.1 protein NbS00057217g0002.1 protein ; (*ITAG) Solyc11g065520.1.1 (e_value=8e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:48024768-48026447 transcript_region:SL2.40ch11:48024768..48026447- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005135 Endonuclease/exonuclease/phosphatase "; NbS00057217g0003.1 protein NbC25549687g0001.1 protein ; (*GB) gi|255540959|ref|XP_002511544.1| (e_value=9e-28) abc transporter, putative [Ricinus communis];; (*SWP) sp|Q9STT8|AB4A_ARATH (e_value=2e-16) ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2;; (*TAIR) AT3G47750.1 (e_value=1e-17) | Symbols: ATATH3, ABCA4 | ATP binding cassette subfamily A4 | chr3:17606427-17610889 FORWARD LENGTH=947;; (*ITAG) Solyc03g113060.2.1 (e_value=7e-43) genomic_reference:SL2.40ch03 gene_region:57405362-57413188 transcript_region:SL2.40ch03:57405362..57413188- go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RFW2_SELML); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00023871g0004.1 protein NbS00028558g0002.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=5e-23) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00028558g0003.1 protein NbS00036783g0004.1 protein NbS00004411g0058.1 protein ; (*GB) gi|297740924|emb|CBI31106.3| (e_value=3e-33) unnamed protein product [Vitis vinifera]; NbS00004411g0022.1 protein NbS00004411g0024.1 protein NbS00004411g0028.1 protein NbS00004411g0030.1 protein NbS00004411g0034.1 protein NbS00004411g0036.1 protein ; (*GB) gi|297740924|emb|CBI31106.3| (e_value=4e-28) unnamed protein product [Vitis vinifera]; NbS00004411g0040.1 protein ; (*GB) gi|255589962|ref|XP_002535139.1| (e_value=1e-15) conserved hypothetical protein [Ricinus communis]; NbS00004411g0041.1 protein ; (*GB) gi|224365621|ref|YP_002608349.1| (e_value=6e-13) orf185 [Vitis vinifera]; NbS00004411g0046.1 protein ; (*ITAG) Solyc07g025240.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26940367-26940952 transcript_region:SL2.40ch07:26940367..26940952- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9Z8_KALDA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00004411g0048.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=2e-55) conserved hypothetical protein [Ricinus communis]; NbS00004411g0052.1 protein NbS00004411g0055.1 protein NbS00004411g0056.1 protein NbS00004411g0066.1 protein NbS00002857g0003.1 protein NbS00002857g0005.1 protein NbS00003957g0004.1 protein NbS00011847g0004.1 protein NbS00011847g0009.1 protein NbS00061182g0001.1 protein ; (*ITAG) Solyc03g096830.2.1 (e_value=5e-30) genomic_reference:SL2.40ch03 gene_region:52640192-52646159 transcript_region:SL2.40ch03:52640192..52646159- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M7W8_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00058001g0012.1 protein NbS00058001g0013.1 protein NbS00008965g0001.1 protein NbS00030560g0005.1 protein NbS00010344g0001.1 protein NbS00018285g0007.1 protein NbS00008246g0003.1 protein NbS00008246g0007.1 protein ; (*GB) gi|357482277|ref|XP_003611424.1| (e_value=3e-21) Regulator of nonsense transcripts-like protein [Medicago truncatula];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=1e-22) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=9e-24) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=1e-23) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00037096g0004.1 protein NbS00037096g0007.1 protein NbS00018114g0005.1 protein ; (*GB) gi|255556564|ref|XP_002519316.1| (e_value=9e-117) Squamosa promoter-binding protein, putative [Ricinus communis];; (*SWP) sp|Q9SMX9|SPL1_ARATH (e_value=2e-79) Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2;; (*TAIR) AT2G47070.1 (e_value=2e-80) | Symbols: SPL1 | squamosa promoter binding protein-like 1 | chr2:19337144-19340552 FORWARD LENGTH=881;; (*ITAG) Solyc05g053240.2.1 (e_value=3e-152) genomic_reference:SL2.40ch05 gene_region:62525730-62535803 transcript_region:SL2.40ch05:62525730..62535803+ go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00000597g0003.1 protein ; (*GB) gi|147770956|emb|CAN76246.1| (e_value=4e-14) hypothetical protein VITISV_023382 [Vitis vinifera];; (*SWP) sp|O80536|PIF3_ARATH (e_value=8e-13) Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1;; (*TAIR) AT1G09530.2 (e_value=6e-14) | Symbols: PIF3, POC1, PAP3 | phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524;; (*ITAG) Solyc04g007430.1.1 (e_value=1e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:1103760-1107257 transcript_region:SL2.40ch04:1103760..1107257+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00000597g0004.1 protein NbS00000597g0111.1 protein NbS00000597g0108.1 protein NbS00051728g0002.1 protein NbS00007888g0003.1 protein ; (*GB) gi|255571069|ref|XP_002526485.1| (e_value=8e-23) casein kinase II beta chain, putative [Ricinus communis];; (*SWP) sp|P40229|CSK2C_ARATH (e_value=2e-22) Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1;; (*TAIR) AT4G17640.1 (e_value=2e-23) | Symbols: CKB2 | casein kinase II beta chain 2 | chr4:9825438-9826988 FORWARD LENGTH=282;; (*ITAG) Solyc01g088740.2.1 (e_value=3e-24) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00007888g0105.1 protein NbS00007888g0106.1 protein NbS00046682g0003.1 protein NbS00046682g0006.1 protein NbS00009999g0005.1 protein NbS00009999g0101.1 protein NbS00053961g0010.1 protein NbS00028654g0006.1 protein NbC23233809g0001.1 protein ; (*GB) gi|356533087|ref|XP_003535100.1| (e_value=2e-25) PREDICTED: protein KRI1 homolog [Glycine max];; (*SWP) sp|Q8VDQ9|KRI1_MOUSE (e_value=2e-15) Protein KRI1 homolog OS=Mus musculus GN=Kri1 PE=1 SV=2;; (*TAIR) AT3G24080.2 (e_value=7e-23) | Symbols: | KRR1 family protein | chr3:8695191-8697107 REVERSE LENGTH=630;; (*ITAG) Solyc07g064350.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:63761602-63763458 transcript_region:SL2.40ch07:63761602..63763458- functional_description:"Protein KRI1 homolog (AHRD V1 *--- KRI1_BOVIN); contains Interpro domain(s) IPR007851 KRR1 interacting protein 1, subgroup "; NbS00009428g0004.1 protein ; (*GB) gi|359481157|ref|XP_003632582.1| (e_value=3e-79) PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q96329|ACOX4_ARATH (e_value=7e-76) Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1;; (*TAIR) AT3G51840.1 (e_value=5e-77) | Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436;; (*ITAG) Solyc10g076600.1.1 (e_value=5e-83) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58885360-58889823 transcript_region:SL2.40ch10:58885360..58889823- go_terms:GO:0055114 functional_description:"Acyl-CoA dehydrogenase (AHRD V1 ***- A3XH21_LEEBM); contains Interpro domain(s) IPR009100 Acyl-CoA dehydrogenase/oxidase, middle and N-terminal "; GO:0055114 NbS00009428g0005.1 protein NbS00004860g0001.1 protein NbS00030248g0003.1 protein NbS00007275g0002.1 protein NbS00024471g0001.1 protein NbS00021934g0003.1 protein NbS00021934g0004.1 protein NbS00029376g0002.1 protein NbS00003897g0009.1 protein NbS00045960g0006.1 protein NbS00049080g0001.1 protein NbS00040551g0004.1 protein NbS00040551g0006.1 protein NbS00048306g0001.1 protein ; (*GB) gi|356521486|ref|XP_003529386.1| (e_value=2e-49) PREDICTED: nodulation protein H-like [Glycine max];; (*TAIR) AT2G15730.1 (e_value=3e-49) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:6849797-6851881 FORWARD LENGTH=344;; (*ITAG) Solyc01g108510.2.1 (e_value=2e-55) genomic_reference:SL2.40ch01 gene_region:87573558-87580500 transcript_region:SL2.40ch01:87573558..87580500- functional_description:"Nodulation protein H (AHRD V1 ***- NOH4_RHIME)"; NbS00020859g0010.1 protein NbS00006379g0020.1 protein NbS00026422g0001.1 protein NbS00007844g0004.1 protein NbS00027948g0003.1 protein NbS00012784g0012.1 protein NbS00029457g0006.1 protein NbS00029457g0007.1 protein NbS00013859g0005.1 protein ; (*ITAG) Solyc09g066430.2.1 (e_value=3e-14) genomic_reference:SL2.40ch09 gene_region:60447742-60449945 transcript_region:SL2.40ch09:60447742..60449945+ go_terms:GO:0003735,GO:0003723 functional_description:"60S ribosomal protein L14 (AHRD V1 ***- D7MEJ2_ARALY); contains Interpro domain(s) IPR002784 Ribosomal protein L14 "; GO:0003735,GO:0003723 NbS00035031g0001.1 protein NbS00004327g0003.1 protein NbS00004327g0004.1 protein NbS00004327g0005.1 protein NbS00022670g0001.1 protein ; (*ITAG) Solyc11g028250.1.1 (e_value=3e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:17313728-17316270 transcript_region:SL2.40ch11:17313728..17316270- functional_description:"Unknown Protein (AHRD V1)"; NbS00002506g0002.1 protein NbS00034824g0006.1 protein NbS00010501g0004.1 protein NbS00010501g0007.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=8e-20) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00047661g0003.1 protein ; (*GB) gi|359475982|ref|XP_002280120.2| (e_value=5e-22) PREDICTED: endoglucanase 16-like [Vitis vinifera];; (*SWP) sp|Q6K7G9|GUN8_ORYSJ (e_value=4e-18) Endoglucanase 8 OS=Oryza sativa subsp. japonica GN=Os02g0778600 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=2e-17) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=8e-30) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00022068g0004.1 protein NbS00020706g0012.1 protein ; (*GB) gi|297745301|emb|CBI40381.3| (e_value=4e-61) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G45900.1 (e_value=4e-35) | Symbols: | Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related | chr2:18886069-18888674 REVERSE LENGTH=720;; (*ITAG) Solyc01g094640.2.1 (e_value=6e-135) genomic_reference:SL2.40ch01 gene_region:77836349-77842064 transcript_region:SL2.40ch01:77836349..77842064- functional_description:"( related) (AHRD V1 ***- Q2HTJ8_MEDTR)"; NbS00001103g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00050006g0004.1 protein NbS00016566g0006.1 protein ; (*GB) gi|187940724|gb|ACD39463.1| (e_value=1e-25) BEL30 protein [Solanum etuberosum];; (*SWP) sp|Q9SIW1|BLH7_ARATH (e_value=9e-20) BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1;; (*TAIR) AT2G16400.1 (e_value=6e-21) | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:7101490-7103200 REVERSE LENGTH=482;; (*ITAG) Solyc01g109980.2.1 (e_value=2e-28) genomic_reference:SL2.40ch01 gene_region:88557367-88561809 transcript_region:SL2.40ch01:88557367..88561809- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 6 (AHRD V1 *--- BLH6_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00007702g0007.1 protein ; (*GB) gi|147803571|emb|CAN64281.1| (e_value=3e-37) hypothetical protein VITISV_028835 [Vitis vinifera];; (*SWP) sp|Q1HDT2|CHX24_ARATH (e_value=1e-31) Cation/H(+) antiporter 24 OS=Arabidopsis thaliana GN=CHX24 PE=2 SV=2;; (*TAIR) AT5G37060.1 (e_value=1e-32) | Symbols: ATCHX24, CHX24 | cation/H+ exchanger 24 | chr5:14642741-14645414 REVERSE LENGTH=859;; (*ITAG) Solyc08g078880.2.1 (e_value=1e-16) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00007702g0010.1 protein NbS00007702g0105.1 protein NbS00007702g0106.1 protein NbS00007702g0107.1 protein NbS00020875g0015.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00000678g0006.1 protein NbS00051930g0004.1 protein NbS00051930g0009.1 protein ; (*GB) gi|359486036|ref|XP_002267907.2| (e_value=2e-21) PREDICTED: uncharacterized protein LOC100253141 [Vitis vinifera];; (*TAIR) AT1G22930.1 (e_value=2e-16) | Symbols: | T-complex protein 11 | chr1:8117521-8121854 FORWARD LENGTH=1131;; (*ITAG) Solyc01g103990.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:84219864-84227006 transcript_region:SL2.40ch01:84219864..84227006- functional_description:"T-complex protein 11 (AHRD V1 ***- D7KML1_ARALY); contains Interpro domain(s) IPR008862 T-complex 11 "; NbS00018764g0009.1 protein NbS00018764g0010.1 protein NbS00008121g0004.1 protein ; (*ITAG) Solyc03g117040.2.1 (e_value=1e-14) genomic_reference:SL2.40ch03 gene_region:60351139-60357181 transcript_region:SL2.40ch03:60351139..60357181- functional_description:"X1 (Fragment) (AHRD V1 ***- Q3T7E6_ZEAMM); contains Interpro domain(s) IPR005379 Region of unknown function XH "; NbS00030046g0005.1 protein NbS00032365g0001.1 protein NbS00038256g0004.1 protein NbS00038256g0006.1 protein NbS00025801g0004.1 protein NbS00028280g0003.1 protein ; (*GB) gi|359490578|ref|XP_002275623.2| (e_value=1e-17) PREDICTED: S-type anion channel SLAH3-like [Vitis vinifera];; (*ITAG) Solyc06g036440.1.1 (e_value=4e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22680542-22683163 transcript_region:SL2.40ch06:22680542..22683163+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00015669g0003.1 protein NbS00015669g0201.1 protein NbS00014340g0002.1 protein NbS00014340g0005.1 protein NbS00054022g0002.1 protein NbS00021842g0002.1 protein NbS00006062g0004.1 protein NbS00057225g0003.1 protein ; (*GB) gi|124360722|gb|ABD33259.2| (e_value=1e-16) non-LTR retroelement reverse transcriptase-like protein, related [Medicago truncatula]; NbS00039724g0001.1 protein NbS00005674g0002.1 protein NbS00005674g0003.1 protein ; (*GB) gi|356556092|ref|XP_003546361.1| (e_value=1e-24) PREDICTED: protein pleiotropic regulatory locus 1-like [Glycine max];; (*SWP) sp|Q42384|PRL1_ARATH (e_value=2e-23) Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana GN=PRL1 PE=1 SV=1;; (*TAIR) AT4G15900.1 (e_value=2e-24) | Symbols: PRL1 | pleiotropic regulatory locus 1 | chr4:9023775-9027443 FORWARD LENGTH=486;; (*ITAG) Solyc01g094480.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:77700642-77708854 transcript_region:SL2.40ch01:77700642..77708854+ go_terms:GO:0003714 functional_description:"Pre-mRNA-splicing factor prp46 (AHRD V1 **-- B6K7I2_SCHJY); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0003714 NbS00012084g0006.1 protein NbS00019735g0005.1 protein NbS00051463g0002.1 protein NbS00037102g0003.1 protein NbS00059972g0001.1 protein NbS00035991g0002.1 protein NbS00047841g0004.1 protein NbS00010167g0008.1 protein NbS00010167g0010.1 protein NbC24850869g0001.1 protein ; (*GB) gi|225434016|ref|XP_002272196.1| (e_value=1e-44) PREDICTED: protein SHORT-ROOT [Vitis vinifera];; (*SWP) sp|Q9SZF7|SHR_ARATH (e_value=6e-28) Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1;; (*TAIR) AT4G37650.1 (e_value=5e-29) | Symbols: SHR, SGR7 | GRAS family transcription factor | chr4:17691871-17693466 FORWARD LENGTH=531;; (*ITAG) Solyc08g014030.1.1 (e_value=9e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:3531350-3532606 transcript_region:SL2.40ch08:3531350..3532606+ go_terms:GO:0005515,GO:0043565 functional_description:"GRAS family transcription factor (AHRD V1 **-- B9MY72_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0005515,GO:0043565 NbS00038916g0003.1 protein NbS00021910g0003.1 protein ; (*GB) gi|6624302|dbj|BAA88497.1| (e_value=4e-22) small GTP-binding protein [Carica papaya];; (*SWP) sp|Q39570|YPTC4_CHLRE (e_value=3e-22) GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1;; (*TAIR) AT4G35860.2 (e_value=1e-23) | Symbols: ATRABB1B, ATGB2, ATRAB2C, GB2 | GTP-binding 2 | chr4:16987118-16988587 REVERSE LENGTH=165;; (*ITAG) Solyc02g093530.2.1 (e_value=1e-25) genomic_reference:SL2.40ch02 gene_region:48947510-48952106 transcript_region:SL2.40ch02:48947510..48952106- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-2-A (AHRD V1 ***- B6T1U8_MAIZE); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00006712g0009.1 protein NbS00010903g0013.1 protein NbS00010903g0019.1 protein NbS00010903g0009.1 protein NbS00010903g0010.1 protein NbS00001245g0012.1 protein NbS00011021g0004.1 protein NbS00006945g0005.1 protein NbS00022994g0006.1 protein ; (*GB) gi|296088722|emb|CBI38172.3| (e_value=1e-83) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q38799|ODPB_ARATH (e_value=2e-82) Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2;; (*TAIR) AT5G50850.1 (e_value=1e-83) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363;; (*ITAG) Solyc03g097680.2.1 (e_value=2e-87) genomic_reference:SL2.40ch03 gene_region:53455935-53462816 transcript_region:SL2.40ch03:53455935..53462816+ go_terms:GO:0004739 functional_description:"Pyruvate dehydrogenase E1 component subunit beta (AHRD V1 **-* B6T6H3_MAIZE); contains Interpro domain(s) IPR005475 Transketolase, central region "; GO:0004739 NbS00015708g0008.1 protein NbS00007047g0118.1 protein NbS00006923g0001.1 protein ; (*GB) gi|225451469|ref|XP_002270737.1| (e_value=9e-56) PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera];; (*TAIR) AT3G01930.2 (e_value=6e-58) | Symbols: | Major facilitator superfamily protein | chr3:319289-321488 REVERSE LENGTH=584;; (*ITAG) Solyc02g094190.2.1 (e_value=3e-61) genomic_reference:SL2.40ch02 gene_region:49368076-49371114 transcript_region:SL2.40ch02:49368076..49371114- functional_description:"Nodulin family protein (AHRD V1 ***- D7M603_ARALY); contains Interpro domain(s) IPR010658 Nodulin-like "; NbC23452727g0001.1 protein ; (*GB) gi|4768916|gb|AAD29679.1|AF133209_1 (e_value=1e-16) CLC-Nt2 protein [Nicotiana tabacum];; (*TAIR) AT3G27170.1 (e_value=1e-13) | Symbols: CLC-B, ATCLC-B | chloride channel B | chr3:10024147-10026921 FORWARD LENGTH=780;; (*ITAG) Solyc02g068080.2.1 (e_value=1e-17) genomic_reference:SL2.40ch02 gene_region:32703505-32707626 transcript_region:SL2.40ch02:32703505..32707626- go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00047269g0004.1 protein NbS00047269g0005.1 protein NbS00054428g0005.1 protein NbS00054428g0006.1 protein NbS00039921g0003.1 protein ; (*ITAG) Solyc01g099580.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81533868-81537652 transcript_region:SL2.40ch01:81533868..81537652- functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 *-*- B6TNA6_MAIZE); contains Interpro domain(s) IPR011424 C1-like "; NbS00039921g0005.1 protein NbS00019099g0003.1 protein NbS00003485g0004.1 protein NbS00003485g0006.1 protein ; (*GB) gi|194706300|gb|ACF87234.1| (e_value=1e-26) unknown [Zea mays];; (*TAIR) AT4G22285.1 (e_value=3e-20) | Symbols: | Ubiquitin C-terminal hydrolases superfamily protein | chr4:11779063-11781898 REVERSE LENGTH=541;; (*ITAG) Solyc02g068480.2.1 (e_value=1e-29) genomic_reference:SL2.40ch02 gene_region:32994749-33000085 transcript_region:SL2.40ch02:32994749..33000085- go_terms:GO:0005515,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 ***- D7ME50_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0005515,GO:0004197 NbS00002954g0005.1 protein NbS00031075g0003.1 protein ; (*GB) gi|225432366|ref|XP_002275787.1| (e_value=1e-40) PREDICTED: putative chromatin-remodeling complex ATPase chain isoform 1 [Vitis vinifera];; (*SWP) sp|Q8RWY3|ISW2_ARATH (e_value=4e-39) Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3;; (*TAIR) AT5G18620.2 (e_value=3e-42) | Symbols: CHR17 | chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1072;; (*ITAG) Solyc01g067390.2.1 (e_value=8e-43) genomic_reference:SL2.40ch01 gene_region:68257411-68268333 transcript_region:SL2.40ch01:68257411..68268333+ go_terms:GO:0015616,GO:0042393 functional_description:"Chromodomain-helicase-DNA-binding protein 2 (AHRD V1 *--* CHD2_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0015616,GO:0042393 NbS00010772g0001.1 protein NbS00004198g0001.1 protein NbS00023309g0002.1 protein NbS00004336g0002.1 protein NbS00020545g0002.1 protein NbS00012157g0001.1 protein NbC23387408g0001.1 protein ; (*ITAG) Solyc07g008760.2.1 (e_value=3e-20) genomic_reference:SL2.40ch07 gene_region:3728618-3747433 transcript_region:SL2.40ch07:3728618..3747433- go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat (TPR)-containing protein-like protein (AHRD V1 ***- Q84NS6_ORYSJ); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00062261g0002.1 protein NbS00032631g0003.1 protein NbS00042780g0001.1 protein NbS00018096g0010.1 protein NbS00043987g0005.1 protein NbS00008765g0014.1 protein NbS00011315g0105.1 protein NbS00011315g0106.1 protein NbS00006418g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-45) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00006418g0005.1 protein ; (*ITAG) Solyc04g051670.2.1 (e_value=3e-16) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00002797g0005.1 protein NbS00001557g0006.1 protein NbS00001557g0010.1 protein NbS00032091g0004.1 protein NbS00021217g0004.1 protein NbC25756172g0001.1 protein ; (*GB) gi|297741512|emb|CBI32644.3| (e_value=8e-15) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc09g005930.2.1 (e_value=4e-30) genomic_reference:SL2.40ch09 gene_region:644543-650137 transcript_region:SL2.40ch09:644543..650137- functional_description:"Unknown Protein (AHRD V1)"; NbS00004920g0003.1 protein ; (*GB) gi|147855864|emb|CAN78624.1| (e_value=1e-24) hypothetical protein VITISV_041103 [Vitis vinifera]; NbS00037641g0003.1 protein NbS00014132g0004.1 protein NbS00014132g0005.1 protein ; (*GB) gi|224089629|ref|XP_002308787.1| (e_value=2e-28) f-box family protein [Populus trichocarpa];; (*SWP) sp|Q9SU30|CPR30_ARATH (e_value=2e-12) F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2;; (*TAIR) AT4G12560.2 (e_value=2e-13) | Symbols: CPR30 | F-box and associated interaction domains-containing protein | chr4:7441815-7443157 FORWARD LENGTH=413;; (*ITAG) Solyc01g008660.2.1 (e_value=8e-21) genomic_reference:SL2.40ch01 gene_region:2721644-2722893 transcript_region:SL2.40ch01:2721644..2722893- functional_description:"F-box family protein (AHRD V1 ***- B9HCS6_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00021599g0006.1 protein NbS00010829g0003.1 protein NbS00019604g0003.1 protein ; (*ITAG) Solyc12g094410.1.1 (e_value=3e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00019604g0006.1 protein NbC24139746g0001.1 protein ; (*ITAG) Solyc04g050150.2.1 (e_value=2e-30) genomic_reference:SL2.40ch04 gene_region:44804160-44840698 transcript_region:SL2.40ch04:44804160..44840698- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 7 (AHRD V1 *--- CHD7_CHICK); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00056546g0001.1 protein NbS00010763g0009.1 protein ; (*GB) gi|116790018|gb|ABK25472.1| (e_value=6e-38) unknown [Picea sitchensis];; (*SWP) sp|Q10CE4|GLO1_ORYSJ (e_value=4e-38) Peroxisomal (S)-2-hydroxy-acid oxidase GLO1 OS=Oryza sativa subsp. japonica GN=GLO1 PE=1 SV=1;; (*TAIR) AT3G14420.4 (e_value=1e-37) | Symbols: | Aldolase-type TIM barrel family protein | chr3:4821861-4823899 FORWARD LENGTH=348;; (*ITAG) Solyc07g056540.2.1 (e_value=1e-38) genomic_reference:SL2.40ch07 gene_region:61655287-61658877 transcript_region:SL2.40ch07:61655287..61658877+ go_terms:GO:0008891 functional_description:"L-lactate dehydrogenase (AHRD V1 ***- C0S8Q7_PARBP); contains Interpro domain(s) IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent "; GO:0008891 NbS00041791g0002.1 protein NbS00009115g0007.1 protein NbS00017242g0006.1 protein NbS00018354g0002.1 protein NbS00028032g0002.1 protein NbS00043312g0001.1 protein NbS00001494g0004.1 protein NbS00007951g0011.1 protein NbS00003499g0002.1 protein NbS00048930g0001.1 protein NbS00004663g0002.1 protein NbS00031896g0013.1 protein NbS00031896g0010.1 protein ; (*GB) gi|226510337|ref|NP_001147125.1| (e_value=4e-44) ATP-binding cassette sub-family G member 2 [Zea mays];; (*SWP) sp|Q8RXN0|AB11G_ARATH (e_value=1e-41) ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1;; (*TAIR) AT1G17840.1 (e_value=8e-43) | Symbols: WBC11, ABCG11, DSO, COF1, ATWBC11 | white-brown complex homolog protein 11 | chr1:6142870-6145894 FORWARD LENGTH=703;; (*ITAG) Solyc11g065360.1.1 (e_value=2e-58) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47880655-47891514 transcript_region:SL2.40ch11:47880655..47891514+ go_terms:GO:0005395 functional_description:"ABC transporter G family member 15 (AHRD V1 **** AB15G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0005395 NbS00020468g0007.1 protein NbS00020468g0106.1 protein NbC24211353g0001.1 protein ; (*GB) gi|193290694|gb|ACF17655.1| (e_value=2e-76) putative ferredoxin-dependent glutamate synthase 1 [Capsicum annuum];; (*SWP) sp|Q43155|GLTB_SPIOL (e_value=6e-70) Ferredoxin-dependent glutamate synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=3;; (*TAIR) AT5G04140.2 (e_value=1e-69) | Symbols: GLU1, GLS1, GLUS, FD-GOGAT | glutamate synthase 1 | chr5:1130031-1138186 FORWARD LENGTH=1648;; (*ITAG) Solyc03g063560.2.1 (e_value=7e-79) genomic_reference:SL2.40ch03 gene_region:32287538-32328106 transcript_region:SL2.40ch03:32287538..32328106- go_terms:GO:0005515 functional_description:"Glutamate synthase (Ferredoxin) (AHRD V1 ***- B8HTZ7_CYAP4); contains Interpro domain(s) IPR002932 Glutamate synthase, central-C "; GO:0005515 NbS00007944g0001.1 protein NbS00037133g0006.1 protein NbS00042390g0012.1 protein ; (*GB) gi|255572672|ref|XP_002527269.1| (e_value=5e-24) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G43280.1 (e_value=2e-12) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr2:17989739-17990861 FORWARD LENGTH=206; NbS00042390g0016.1 protein NbS00042390g0008.1 protein NbS00042390g0009.1 protein NbS00031040g0003.1 protein NbS00031040g0005.1 protein NbS00016411g0013.1 protein NbS00016411g0015.1 protein NbS00050144g0003.1 protein NbS00009560g0004.1 protein NbS00017388g0004.1 protein NbS00023380g0004.1 protein NbS00016201g0008.1 protein ; (*GB) gi|113205246|gb|AAT39963.2| (e_value=4e-16) Polyprotein, putative [Solanum demissum]; NbS00049999g0001.1 protein ; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=6e-32) potassium channel [Nicotiana paniculata];; (*ITAG) Solyc01g104030.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00017976g0005.1 protein NbS00011570g0006.1 protein NbS00011570g0007.1 protein ; (*ITAG) Solyc11g011540.1.1 (e_value=4e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4594602-4595977 transcript_region:SL2.40ch11:4594602..4595977+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00028916g0001.1 protein NbS00013273g0007.1 protein NbS00001132g0003.1 protein NbS00001205g0005.1 protein NbS00062087g0001.1 protein NbS00017940g0005.1 protein NbC25950894g0003.1 protein NbS00012103g0003.1 protein NbS00012103g0004.1 protein NbS00001353g0005.1 protein NbS00001353g0006.1 protein NbS00001353g0009.1 protein NbS00001719g0103.1 protein NbS00001719g0107.1 protein NbS00010380g0005.1 protein ; (*GB) gi|224104499|ref|XP_002313456.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8VYR2|NUDT9_ARATH (e_value=7e-18) Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1;; (*TAIR) AT3G46200.1 (e_value=5e-19) | Symbols: aTNUDT9, NUDT9 | nudix hydrolase homolog 9 | chr3:16969283-16971017 FORWARD LENGTH=311;; (*ITAG) Solyc11g072970.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53198034-53204116 transcript_region:SL2.40ch11:53198034..53204116- go_terms:GO:0016787 functional_description:"Nucleoside diphosphate-linked moiety X motif 22 (AHRD V1 ***- NUD22_RAT); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00010380g0006.1 protein NbS00014043g0003.1 protein NbS00031601g0001.1 protein ; (*ITAG) Solyc11g069210.1.1 (e_value=9e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50931416-50933207 transcript_region:SL2.40ch11:50931416..50933207- functional_description:"Genomic DNA chromosome 5 TAC clone K19B1 (AHRD V1 *-*- Q9FJJ1_ARATH)"; NbC23471738g0001.1 protein ; (*ITAG) Solyc05g006660.2.1 (e_value=5e-18) genomic_reference:SL2.40ch05 gene_region:1331164-1338948 transcript_region:SL2.40ch05:1331164..1338948+ functional_description:"cDNA clone J075153F01 full insert sequence (AHRD V1 **-- B7F9A7_ORYSJ); contains Interpro domain(s) IPR009769 Protein of unknown function DUF1336 "; NbS00034178g0001.1 protein NbS00042305g0002.1 protein ; (*ITAG) Solyc08g016290.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00020269g0003.1 protein NbS00020269g0005.1 protein NbS00020269g0006.1 protein NbS00020269g0008.1 protein NbS00008024g0008.1 protein ; (*ITAG) Solyc07g039210.2.1 (e_value=1e-15) genomic_reference:SL2.40ch07 gene_region:42924002-42930110 transcript_region:SL2.40ch07:42924002..42930110- go_terms:GO:0005515,GO:0047499 functional_description:"PCI domain-containing protein 2 homolog (AHRD V1 **-- PCID2_DROME); contains Interpro domain(s) IPR013143 PCI/PINT associated module "; GO:0005515,GO:0047499 NbS00019525g0010.1 protein NbS00012503g0003.1 protein NbS00006812g0001.1 protein ; (*GB) gi|224112132|ref|XP_002332825.1| (e_value=2e-29) nucleosome/chromatin assembly factor group [Populus trichocarpa];; (*SWP) sp|O22607|MSI4_ARATH (e_value=2e-28) WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3;; (*TAIR) AT2G19520.1 (e_value=2e-29) | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507;; (*ITAG) Solyc03g121580.2.1 (e_value=4e-32) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00011447g0005.1 protein NbS00011447g0009.1 protein NbS00044493g0007.1 protein NbS00044493g0010.1 protein ; (*GB) gi|357518883|ref|XP_003629730.1| (e_value=2e-20) Peptidyl-tRNA hydrolase [Medicago truncatula];; (*SWP) sp|Q6NLS8|PTHM_ARATH (e_value=5e-16) Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1;; (*TAIR) AT5G19830.1 (e_value=4e-17) | Symbols: | Peptidyl-tRNA hydrolase family protein | chr5:6703383-6705125 FORWARD LENGTH=219;; (*ITAG) Solyc02g093030.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:48551254-48557510 transcript_region:SL2.40ch02:48551254..48557510- go_terms:GO:0005515 functional_description:"Peptidyl-tRNA hydrolase family protein (AHRD V1 ***- D7KGE1_ARALY); contains Interpro domain(s) IPR001328 Peptidyl-tRNA hydrolase "; GO:0005515 NbS00025381g0001.1 protein NbS00048082g0001.1 protein ; (*GB) gi|356527455|ref|XP_003532326.1| (e_value=3e-34) PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max];; (*TAIR) AT1G59760.1 (e_value=2e-31) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=6e-39) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00034693g0001.1 protein NbS00059385g0002.1 protein NbS00006484g0015.1 protein NbS00006484g0010.1 protein NbS00004714g0003.1 protein NbS00004714g0004.1 protein NbS00024829g0009.1 protein NbS00029913g0001.1 protein NbS00032498g0004.1 protein NbS00012016g0009.1 protein NbS00019529g0111.1 protein NbS00019529g0109.1 protein NbS00022241g0001.1 protein NbS00001310g0004.1 protein NbS00001310g0005.1 protein NbS00001310g0007.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=7e-22) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00028263g0005.1 protein ; (*GB) gi|224096772|ref|XP_002310730.1| (e_value=7e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0JP99|Y1341_ORYSJ (e_value=3e-38) B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1;; (*ITAG) Solyc02g090710.2.1 (e_value=1e-156) genomic_reference:SL2.40ch02 gene_region:46809258-46814499 transcript_region:SL2.40ch02:46809258..46814499+ go_terms:GO:0006355 functional_description:"B3 domain-containing protein Os01g0234100 (AHRD V1 ***- Y1341_ORYSJ); contains Interpro domain(s) IPR003340 Transcriptional factor B3 "; GO:0006355 NbS00028263g0007.1 protein NbS00038178g0007.1 protein NbS00030638g0005.1 protein NbS00047387g0001.1 protein ; (*ITAG) Solyc06g051170.2.1 (e_value=1e-18) genomic_reference:SL2.40ch06 gene_region:30850904-30862817 transcript_region:SL2.40ch06:30850904..30862817- functional_description:"RNA-dependent RNA polymerase family protein (AHRD V1 ***- D7L6F2_ARALY); contains Interpro domain(s) IPR007855 RNA-dependent RNA polymerase, eukaryotic-type "; NbS00029527g0002.1 protein NbS00029527g0003.1 protein NbS00009527g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=5e-13) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00011823g0002.1 protein ; (*ITAG) Solyc07g005030.2.1 (e_value=4e-13) genomic_reference:SL2.40ch07 gene_region:52983-79984 transcript_region:SL2.40ch07:52983..79984- go_terms:GO:0005515 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0005515 NbS00009480g0019.1 protein NbS00035075g0005.1 protein NbS00023951g0003.1 protein NbS00045069g0012.1 protein NbS00045069g0017.1 protein NbS00045069g0019.1 protein NbS00045069g0020.1 protein NbS00045069g0008.1 protein NbS00045069g0009.1 protein NbS00055913g0003.1 protein NbS00000664g0005.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-13) RNase H family protein [Solanum demissum]; NbS00031336g0003.1 protein NbS00011427g0007.1 protein NbS00005313g0004.1 protein NbC25044046g0001.1 protein ; (*GB) gi|391868374|gb|AFM44934.1| (e_value=6e-58) golden1-like protein [Solanum lycopersicum];; (*ITAG) Solyc07g053630.2.1 (e_value=7e-60) genomic_reference:SL2.40ch07 gene_region:59386217-59390311 transcript_region:SL2.40ch07:59386217..59390311- go_terms:GO:0003700,GO:0010843 functional_description:"Response regulator (AHRD V1 *--- A1A6A6_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700,GO:0010843 NbS00006598g0004.1 protein NbS00006598g0005.1 protein NbS00006598g0203.1 protein NbS00006598g0204.1 protein NbS00010237g0001.1 protein NbS00056736g0005.1 protein NbS00004785g0003.1 protein NbS00003749g0011.1 protein NbS00015002g0003.1 protein ; (*ITAG) Solyc02g032200.2.1 (e_value=9e-23) genomic_reference:SL2.40ch02 gene_region:18711443-18715788 transcript_region:SL2.40ch02:18711443..18715788+ go_terms:GO:0030275 functional_description:"Tir-lrr, resistance protein fragment"; GO:0030275 NbS00038394g0004.1 protein NbS00001313g0003.1 protein NbS00017336g0007.1 protein NbS00002882g0007.1 protein NbS00005650g0002.1 protein NbS00041472g0002.1 protein NbS00013191g0002.1 protein NbS00013191g0003.1 protein NbS00023160g0001.1 protein ; (*ITAG) Solyc11g040240.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:30306489-30315715 transcript_region:SL2.40ch11:30306489..30315715+ functional_description:"Pentatricopeptide repeat (AHRD V1 ***- A2Q3S7_MEDTR); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007243g0002.1 protein NbS00007380g0010.1 protein ; (*GB) gi|255554557|ref|XP_002518317.1| (e_value=6e-24) serine/threonine-protein kinase bri1, putative [Ricinus communis];; (*ITAG) Solyc01g087510.1.1 (e_value=3e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:74215693-74218969 transcript_region:SL2.40ch01:74215693..74218969- go_terms:GO:0004675 functional_description:"LRR receptor-like serine/threonine-protein kinase, RLP"; GO:0004675 NbS00004138g0009.1 protein NbS00039075g0002.1 protein NbS00000967g0001.1 protein ; (*ITAG) Solyc12g006060.1.1 (e_value=1e-22) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:648797-656982 transcript_region:SL2.40ch12:648797..656982+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007735g0004.1 protein NbS00007735g0007.1 protein ; (*ITAG) Solyc11g007770.1.1 (e_value=5e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1988294-1993338 transcript_region:SL2.40ch11:1988294..1993338- go_terms:GO:0031227 functional_description:"Exostosin-2 (AHRD V1 *-*- Q0IFF4_AEDAE); contains Interpro domain(s) IPR015338 EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "; GO:0031227 NbS00012601g0004.1 protein NbS00055699g0003.1 protein NbS00037071g0002.1 protein ; (*GB) gi|255574263|ref|XP_002528046.1| (e_value=8e-43) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT1G06560.1 (e_value=7e-44) | Symbols: | NOL1/NOP2/sun family protein | chr1:2007660-2011824 FORWARD LENGTH=599;; (*ITAG) Solyc07g045070.2.1 (e_value=1e-51) genomic_reference:SL2.40ch07 gene_region:55492492-55515509 transcript_region:SL2.40ch07:55492492..55515509- go_terms:GO:0008168,GO:0003723 functional_description:"Ribosomal RNA small subunit methyltransferase B (AHRD V1 *-*- B4AE47_BACPU); contains Interpro domain(s) IPR001678 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p "; GO:0008168,GO:0003723 NbS00018914g0009.1 protein NbS00018914g0010.1 protein ; (*GB) gi|359494848|ref|XP_002267221.2| (e_value=3e-23) PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera];; (*TAIR) AT1G62340.1 (e_value=6e-14) | Symbols: ALE1, ALE | PA-domain containing subtilase family protein | chr1:23051123-23055656 REVERSE LENGTH=832;; (*ITAG) Solyc03g078200.1.1 (e_value=4e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:43719850-43725264 transcript_region:SL2.40ch03:43719850..43725264- go_terms:GO:0004252 functional_description:"Subtilisin-like serine protease (AHRD V1 **-* Q948Q4_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00002774g0005.1 protein NbS00002774g0007.1 protein NbC23830153g0002.1 protein ; (*GB) gi|12657589|dbj|BAB21563.1| (e_value=2e-39) phosphate transporter [Nicotiana tabacum];; (*SWP) sp|O48639|PHT13_ARATH (e_value=1e-27) Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1;; (*TAIR) AT5G43360.1 (e_value=1e-28) | Symbols: PHT3, ATPT4, PHT1;3 | phosphate transporter 1;3 | chr5:17409524-17411214 FORWARD LENGTH=521;; (*ITAG) Solyc03g005560.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00016258g0001.1 protein NbS00051202g0007.1 protein NbS00000550g0004.1 protein NbS00000550g0005.1 protein NbS00008909g0003.1 protein NbS00008909g0301.1 protein NbS00008909g0302.1 protein NbS00002268g0010.1 protein NbS00007328g0016.1 protein NbS00030941g0001.1 protein ; (*ITAG) Solyc04g050150.2.1 (e_value=2e-12) genomic_reference:SL2.40ch04 gene_region:44804160-44840698 transcript_region:SL2.40ch04:44804160..44840698- go_terms:GO:0005524 functional_description:"Chromodomain-helicase-DNA-binding protein 7 (AHRD V1 *--- CHD7_CHICK); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0005524 NbS00005987g0007.1 protein NbS00051224g0002.1 protein ; (*GB) gi|147805778|emb|CAN69475.1| (e_value=3e-21) hypothetical protein VITISV_014376 [Vitis vinifera];; (*SWP) sp|Q9FVJ3|AGD12_ARATH (e_value=5e-14) ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1;; (*TAIR) AT1G70810.1 (e_value=2e-22) | Symbols: | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:26704207-26705091 FORWARD LENGTH=165;; (*ITAG) Solyc06g053390.2.1 (e_value=5e-35) genomic_reference:SL2.40ch06 gene_region:32647940-32649497 transcript_region:SL2.40ch06:32647940..32649497+ functional_description:"C2 domain-containing protein (AHRD V1 **-- D7LLS3_ARALY); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00024187g0004.1 protein NbS00024187g0005.1 protein NbS00032591g0113.1 protein NbS00025428g0011.1 protein NbS00025428g0008.1 protein NbS00012209g0003.1 protein NbS00012209g0006.1 protein NbS00010044g0006.1 protein ; (*GB) gi|224111098|ref|XP_002315747.1| (e_value=7e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=4e-18) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=3e-19) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=8e-20) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00004799g0012.1 protein NbS00026209g0002.1 protein NbS00019248g0012.1 protein ; (*GB) gi|297809471|ref|XP_002872619.1| (e_value=3e-16) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|F4JP36|HAP2_ARATH (e_value=1e-17) Protein HAPLESS 2 OS=Arabidopsis thaliana GN=HAP2 PE=2 SV=1;; (*TAIR) AT4G11720.1 (e_value=9e-19) | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063291-7066784 FORWARD LENGTH=705;; (*ITAG) Solyc08g080450.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:60903285-60911855 transcript_region:SL2.40ch08:60903285..60911855- functional_description:"Generative cell specific-1 (Fragment) (AHRD V1 ***- Q2PGG4_CHLRE); contains Interpro domain(s) IPR018928 Generative cell specific-1, HAP2-GCS1 "; NbS00019248g0013.1 protein NbS00019248g0019.1 protein NbS00017936g0002.1 protein NbS00001148g0008.1 protein NbS00003755g0005.1 protein NbS00041049g0002.1 protein NbS00041049g0004.1 protein NbS00000477g0004.1 protein NbS00038319g0001.1 protein NbS00059051g0001.1 protein NbS00009008g0002.1 protein ; (*ITAG) Solyc03g114780.2.1 (e_value=7e-17) genomic_reference:SL2.40ch03 gene_region:58720409-58734492 transcript_region:SL2.40ch03:58720409..58734492+ go_terms:GO:0004003 functional_description:"Predicted ATP-dependent RNA helicase (AHRD V1 **** Q2U083_ASPOR); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004003 NbS00028089g0016.1 protein NbS00028089g0009.1 protein ; (*ITAG) Solyc10g077020.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59263762-59269147 transcript_region:SL2.40ch10:59263762..59269147+ go_terms:GO:0006468 functional_description:"AT2G40980-like protein (Fragment) (AHRD V1 *-*- D6PPH2_9BRAS); contains Interpro domain(s) IPR011009 Protein kinase-like "; GO:0006468 NbS00010140g0002.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=1e-13) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00000005g0001.1 protein NbS00004507g0005.1 protein NbS00004507g0112.1 protein NbS00004507g0115.1 protein NbS00004507g0116.1 protein NbS00004507g0109.1 protein NbS00007710g0004.1 protein NbS00002195g0004.1 protein NbS00002195g0006.1 protein NbS00002195g0112.1 protein NbS00002195g0115.1 protein NbS00002195g0107.1 protein NbS00002848g0002.1 protein NbS00041880g0003.1 protein NbS00032083g0004.1 protein NbS00000199g0013.1 protein NbS00000199g0008.1 protein NbS00035854g0008.1 protein ; (*GB) gi|224087937|ref|XP_002308266.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LX93|ATL55_ARATH (e_value=2e-16) E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1;; (*TAIR) AT5G10380.1 (e_value=1e-17) | Symbols: RING1, ATRING1 | RING/U-box superfamily protein | chr5:3267819-3268724 FORWARD LENGTH=301;; (*ITAG) Solyc01g066430.2.1 (e_value=4e-19) genomic_reference:SL2.40ch01 gene_region:66714715-66716016 transcript_region:SL2.40ch01:66714715..66716016- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00000209g0004.1 protein NbS00007631g0002.1 protein NbS00011853g0102.1 protein NbS00011853g0103.1 protein NbS00011853g0104.1 protein NbS00012992g0006.1 protein ; (*ITAG) Solyc01g109730.1.1 (e_value=4e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:88371097-88372151 transcript_region:SL2.40ch01:88371097..88372151+ functional_description:"Unknown Protein (AHRD V1)"; NbC24127126g0001.1 protein ; (*GB) gi|297743203|emb|CBI36070.3| (e_value=4e-49) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5Z9S8|PDR12_ORYSJ (e_value=2e-46) Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1;; (*TAIR) AT1G59870.1 (e_value=4e-40) | Symbols: PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 | ABC-2 and Plant PDR ABC-type transporter family protein | chr1:22034661-22039844 FORWARD LENGTH=1469;; (*ITAG) Solyc03g120980.2.1 (e_value=7e-60) genomic_reference:SL2.40ch03 gene_region:63257744-63266892 transcript_region:SL2.40ch03:63257744..63266892+ go_terms:GO:0008559 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8T797_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00003304g0003.1 protein ; (*GB) gi|296088032|emb|CBI35315.3| (e_value=4e-70) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g102670.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:83171469-83174012 transcript_region:SL2.40ch01:83171469..83174012- go_terms:GO:0006281 functional_description:"HhH-GPD (AHRD V1 *--- Q2INY1_ANADE); contains Interpro domain(s) IPR011257 DNA glycosylase "; GO:0006281 NbS00003304g0114.1 protein NbS00003304g0107.1 protein NbS00031203g0005.1 protein ; (*GB) gi|224129400|ref|XP_002320577.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LKJ1|HIBC1_ARATH (e_value=1e-14) 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1;; (*TAIR) AT5G65940.2 (e_value=6e-16) | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase 1 | chr5:26377132-26379161 REVERSE LENGTH=328;; (*ITAG) Solyc01g080930.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:72778912-72788934 transcript_region:SL2.40ch01:72778912..72788934- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00010355g0003.1 protein NbS00012400g0007.1 protein NbS00051922g0001.1 protein ; (*GB) gi|297734589|emb|CBI16640.3| (e_value=9e-17) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G61330.1 (e_value=4e-15) | Symbols: | rRNA processing protein-related | chr5:24657287-24660103 REVERSE LENGTH=436;; (*ITAG) Solyc01g090470.2.1 (e_value=9e-25) genomic_reference:SL2.40ch01 gene_region:75913574-75920741 transcript_region:SL2.40ch01:75913574..75920741+ go_terms:GO:0043522 functional_description:"Bfr2 (AHRD V1 **-- B6JYE3_SCHJY); contains Interpro domain(s) IPR012617 TRAUB "; GO:0043522 NbS00004974g0002.1 protein ; (*GB) gi|255577969|ref|XP_002529856.1| (e_value=4e-89) Mitochondrial deoxynucleotide carrier, putative [Ricinus communis];; (*SWP) sp|Q54MZ4|MCFB_DICDI (e_value=2e-38) Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1;; (*TAIR) AT3G53940.1 (e_value=4e-84) | Symbols: | Mitochondrial substrate carrier family protein | chr3:19971258-19973564 REVERSE LENGTH=365;; (*ITAG) Solyc09g011360.2.1 (e_value=1e-108) genomic_reference:SL2.40ch09 gene_region:4697445-4700991 transcript_region:SL2.40ch09:4697445..4700991- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier protein expressed (AHRD V1 ***- Q10NJ7_ORYSJ); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00040669g0004.1 protein NbS00020320g0003.1 protein NbC25837007g0001.1 protein ; (*ITAG) Solyc09g083120.2.1 (e_value=4e-16) genomic_reference:SL2.40ch09 gene_region:64194273-64200149 transcript_region:SL2.40ch09:64194273..64200149- go_terms:GO:0004252 functional_description:"Peptidase S9 family (AHRD V1 *-*- A0NIH3_OENOE); contains Interpro domain(s) IPR001375 Peptidase S9, prolyl oligopeptidase active site region "; GO:0004252 NbS00015492g0010.1 protein NbS00012902g0006.1 protein NbS00012902g0007.1 protein NbS00024318g0008.1 protein NbC26170789g0001.1 protein NbS00015847g0006.1 protein ; (*GB) gi|147843467|emb|CAN82070.1| (e_value=1e-16) hypothetical protein VITISV_010010 [Vitis vinifera];; (*ITAG) Solyc04g016540.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00022563g0004.1 protein NbS00030461g0006.1 protein ; (*SWP) sp|P12222|YCF1_TOBAC (e_value=8e-13) Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2; NbS00030461g0007.1 protein NbS00014677g0005.1 protein NbS00017725g0004.1 protein NbS00041728g0002.1 protein NbS00015299g0004.1 protein NbS00015299g0007.1 protein NbS00016924g0007.1 protein NbS00014575g0004.1 protein ; (*ITAG) Solyc08g079550.1.1 (e_value=3e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60220573-60223038 transcript_region:SL2.40ch08:60220573..60223038- functional_description:"HAT family dimerisation domain containing protein (AHRD V1 *-*- Q2QMZ1_ORYSJ)"; NbC26217950g0002.1 protein ; (*ITAG) Solyc01g073870.2.1 (e_value=2e-33) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbC26217950g0003.1 protein ; (*GB) gi|363807304|ref|NP_001242366.1| (e_value=2e-33) uncharacterized protein LOC100800635 precursor [Glycine max];; (*SWP) sp|Q9C7N5|GDL14_ARATH (e_value=6e-31) GDSL esterase/lipase At1g29660 OS=Arabidopsis thaliana GN=At1g29660 PE=2 SV=1;; (*TAIR) AT1G29660.1 (e_value=4e-32) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10371955-10373624 FORWARD LENGTH=364;; (*ITAG) Solyc02g071700.2.1 (e_value=3e-50) genomic_reference:SL2.40ch02 gene_region:35644262-35647481 transcript_region:SL2.40ch02:35644262..35647481+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g29670 (AHRD V1 ***- GDL15_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00000329g0013.1 protein NbS00000329g0007.1 protein NbS00020617g0015.1 protein NbS00020617g0008.1 protein NbS00020617g0009.1 protein NbS00029969g0002.1 protein NbS00055384g0001.1 protein NbS00008309g0005.1 protein NbS00008309g0006.1 protein NbS00008309g0007.1 protein NbS00008309g0115.1 protein NbS00005534g0210.1 protein NbS00001033g0004.1 protein NbS00024466g0006.1 protein NbS00024466g0007.1 protein NbS00024466g0008.1 protein NbS00022843g0004.1 protein NbS00024315g0006.1 protein NbS00024315g0008.1 protein NbS00033215g0001.1 protein NbS00025834g0003.1 protein NbS00005829g0004.1 protein NbS00005829g0008.1 protein NbS00014119g0003.1 protein NbS00014119g0005.1 protein NbS00002514g0104.1 protein NbC24784888g0001.1 protein ; (*GB) gi|224094248|ref|XP_002310108.1| (e_value=2e-61) predicted protein [Populus trichocarpa];; (*SWP) sp|Q80VQ1|LRRC1_MOUSE (e_value=3e-18) Leucine-rich repeat-containing protein 1 OS=Mus musculus GN=Lrrc1 PE=2 SV=2;; (*TAIR) AT2G17440.1 (e_value=4e-53) | Symbols: PIRL5 | plant intracellular ras group-related LRR 5 | chr2:7571331-7573406 FORWARD LENGTH=526;; (*ITAG) Solyc00g007300.2.1 (e_value=1e-74) genomic_reference:SL2.40ch00 gene_region:6935594-6938269 transcript_region:SL2.40ch00:6935594..6938269- go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00029310g0005.1 protein NbS00014425g0002.1 protein NbS00014425g0004.1 protein ; (*ITAG) Solyc01g098240.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:80581581-80588427 transcript_region:SL2.40ch01:80581581..80588427+ functional_description:"RNA polymerase Rpb1 C-terminal repeat domain-containing protein (AHRD V1 *--- C5GU31_AJEDR); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00014425g0005.1 protein NbS00018616g0003.1 protein ; (*ITAG) Solyc02g032390.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:19122301-19124289 transcript_region:SL2.40ch02:19122301..19124289- functional_description:"Unknown Protein (AHRD V1)"; NbS00028151g0002.1 protein NbS00015245g0005.1 protein NbS00021081g0009.1 protein NbS00059607g0002.1 protein NbS00059607g0003.1 protein NbS00000548g0004.1 protein NbS00042994g0002.1 protein ; (*ITAG) Solyc02g082540.2.1 (e_value=6e-18) genomic_reference:SL2.40ch02 gene_region:40780785-40792518 transcript_region:SL2.40ch02:40780785..40792518- go_terms:GO:0005515 functional_description:"Actin cytoskeleton-regulatory complex protein pan1 (AHRD V1 *--- PAN1_SCLS1); contains Interpro domain(s) IPR011992 EF-Hand type IPR000261 EPS15 homology (EH) "; GO:0005515 NbS00042994g0003.1 protein NbS00024755g0011.1 protein NbS00024755g0013.1 protein NbS00024755g0005.1 protein NbS00024755g0007.1 protein ; (*GB) gi|147863477|emb|CAN84052.1| (e_value=1e-15) hypothetical protein VITISV_015746 [Vitis vinifera]; NbS00000349g0004.1 protein NbS00003545g0007.1 protein ; (*GB) gi|225437669|ref|XP_002279323.1| (e_value=2e-19) PREDICTED: uncharacterized protein LOC100262326 [Vitis vinifera];; (*TAIR) AT4G01897.1 (e_value=4e-18) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). | chr4:820487-821466 REVERSE LENGTH=122; NbS00003545g0008.1 protein NbS00003920g0004.1 protein NbS00041298g0001.1 protein NbS00049793g0004.1 protein ; (*TAIR) AT2G34570.1 (e_value=1e-15) | Symbols: MEE21 | PIN domain-like family protein | chr2:14563048-14564681 REVERSE LENGTH=281; NbS00032910g0003.1 protein NbS00025203g0007.1 protein NbS00046797g0002.1 protein NbS00037247g0003.1 protein NbS00037247g0005.1 protein NbS00016773g0012.1 protein NbS00016773g0007.1 protein NbS00016773g0008.1 protein NbS00016773g0010.1 protein NbS00002933g0002.1 protein NbS00002933g0003.1 protein NbS00032208g0015.1 protein NbS00038432g0002.1 protein ; (*GB) gi|351722857|ref|NP_001238538.1| (e_value=9e-22) uncharacterized protein LOC100305906 [Glycine max];; (*SWP) sp|Q8GWS0|GRXC5_ARATH (e_value=9e-16) Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=1 SV=1;; (*TAIR) AT4G28730.1 (e_value=7e-17) | Symbols: | Glutaredoxin family protein | chr4:14199174-14200712 FORWARD LENGTH=174;; (*ITAG) Solyc06g083690.2.1 (e_value=7e-25) genomic_reference:SL2.40ch06 gene_region:45316527-45321489 transcript_region:SL2.40ch06:45316527..45321489- go_terms:GO:0045454 functional_description:"Glutaredoxin (AHRD V1 *-*- B5A8A6_WHEAT); contains Interpro domain(s) IPR011899 Glutaredoxin, eukaryotic and viruses "; GO:0045454 NbS00029334g0007.1 protein NbS00013822g0009.1 protein NbS00008328g0011.1 protein NbS00008328g0006.1 protein NbS00008328g0007.1 protein NbS00002231g0004.1 protein NbS00002231g0006.1 protein NbS00012597g0103.1 protein NbS00009622g0011.1 protein ; (*GB) gi|356576919|ref|XP_003556577.1| (e_value=2e-59) PREDICTED: transcription factor bHLH128-like [Glycine max];; (*SWP) sp|Q8H102|BH128_ARATH (e_value=7e-51) Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1;; (*TAIR) AT1G05805.1 (e_value=5e-52) | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1744843-1747427 FORWARD LENGTH=362;; (*ITAG) Solyc09g098110.2.1 (e_value=3e-77) genomic_reference:SL2.40ch09 gene_region:67276888-67284715 transcript_region:SL2.40ch09:67276888..67284715- go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 *-** B6SY24_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0003700 NbS00009622g0015.1 protein NbS00009622g0008.1 protein ; (*GB) gi|255588619|ref|XP_002534663.1| (e_value=1e-31) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G10800.1 (e_value=3e-23) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:3598158-3598514 REVERSE LENGTH=118; NbS00002575g0005.1 protein NbS00016998g0005.1 protein NbS00001602g0105.1 protein NbS00000539g0006.1 protein NbS00000539g0008.1 protein NbS00013018g0004.1 protein NbS00013018g0007.1 protein NbS00018607g0006.1 protein NbS00018607g0008.1 protein NbS00051146g0003.1 protein ; (*GB) gi|225461490|ref|XP_002285059.1| (e_value=1e-36) PREDICTED: uncharacterized protein LOC100252134 isoform 2 [Vitis vinifera];; (*TAIR) AT5G53860.1 (e_value=1e-33) | Symbols: EMB64, emb2737 | embryo defective 2737 | chr5:21865353-21868576 FORWARD LENGTH=402;; (*ITAG) Solyc12g013890.1.1 (e_value=4e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4682111-4693552 transcript_region:SL2.40ch12:4682111..4693552+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 ***- Q9FN40_ARATH)"; NbS00048725g0005.1 protein NbS00025165g0011.1 protein ; (*GB) gi|224072823|ref|XP_002303899.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LQQ1|PPR20_ARATH (e_value=4e-35) Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1;; (*TAIR) AT1G07740.1 (e_value=3e-36) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2399117-2400496 REVERSE LENGTH=459;; (*ITAG) Solyc11g073230.1.1 (e_value=4e-52) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53346205-53347626 transcript_region:SL2.40ch11:53346205..53347626+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KH52_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00023455g0007.1 protein NbS00038870g0014.1 protein NbS00038870g0018.1 protein NbS00032831g0012.1 protein NbS00032831g0005.1 protein NbS00032831g0006.1 protein NbS00032831g0007.1 protein NbS00009599g0001.1 protein NbS00008801g0002.1 protein NbS00010536g0007.1 protein NbS00024061g0005.1 protein NbS00008734g0003.1 protein ; (*ITAG) Solyc06g084590.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:45950566-45959677 transcript_region:SL2.40ch06:45950566..45959677+ functional_description:"Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V1 **-- HGNAT_HUMAN); contains Interpro domain(s) IPR019259 Protein of unknown function DUF2261, transmembrane "; NbS00010679g0002.1 protein NbS00014741g0001.1 protein NbS00020103g0006.1 protein NbS00020103g0007.1 protein NbS00045950g0002.1 protein NbS00015427g0003.1 protein NbS00001143g0202.1 protein NbS00001143g0303.1 protein NbS00022767g0003.1 protein ; (*ITAG) Solyc08g083030.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:62787635-62790415 transcript_region:SL2.40ch08:62787635..62790415- functional_description:"Unknown Protein (AHRD V1)"; NbS00022767g0005.1 protein NbS00011433g0007.1 protein NbS00011433g0010.1 protein NbS00013209g0010.1 protein NbS00001728g0001.1 protein NbS00022015g0004.1 protein NbS00019063g0002.1 protein NbC25785650g0001.1 protein ; (*GB) gi|4887020|gb|AAD32146.1|AF123508_1 (e_value=6e-21) Nt-iaa28 deduced protein [Nicotiana tabacum];; (*ITAG) Solyc01g097290.2.1 (e_value=4e-15) genomic_reference:SL2.40ch01 gene_region:79957345-79960205 transcript_region:SL2.40ch01:79957345..79960205+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00017476g0004.1 protein NbS00017143g0001.1 protein NbS00001413g0012.1 protein NbS00001413g0018.1 protein NbS00001413g0019.1 protein NbS00001413g0029.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=1e-30) conserved hypothetical protein [Ricinus communis]; NbS00001413g0030.1 protein NbS00001413g0034.1 protein NbS00001413g0035.1 protein ; (*ITAG) Solyc07g019630.1.1 (e_value=7e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:12475381-12477104 transcript_region:SL2.40ch07:12475381..12477104- functional_description:"Unknown Protein (AHRD V1)"; NbS00001413g0041.1 protein NbS00001413g0042.1 protein ; (*GB) gi|224104839|ref|XP_002333891.1| (e_value=3e-18) predicted protein [Populus trichocarpa]; NbS00001413g0043.1 protein NbS00001413g0045.1 protein NbS00001413g0047.1 protein NbS00001413g0048.1 protein NbC25046957g0002.1 protein ; (*GB) gi|350535032|ref|NP_001234428.1| (e_value=2e-31) signal recognition particle 54 kDa protein 2 [Solanum lycopersicum];; (*SWP) sp|P49972|SR542_SOLLC (e_value=6e-33) Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G48900.2 (e_value=2e-32) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc12g042740.1.1 (e_value=4e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:43614745-43620419 transcript_region:SL2.40ch12:43614745..43620419- go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR000897 Signal recognition particle, SRP54 subunit, GTPase IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00041819g0009.1 protein NbS00041819g0010.1 protein NbS00024236g0003.1 protein NbS00034482g0006.1 protein NbS00027251g0003.1 protein ; (*ITAG) Solyc01g111510.2.1 (e_value=8e-15) genomic_reference:SL2.40ch01 gene_region:89495534-89500705 transcript_region:SL2.40ch01:89495534..89500705- go_terms:GO:0016688 functional_description:"Ascorbate peroxidase (AHRD V1 **** Q8W4V7_CAPAN); contains Interpro domain(s) IPR002207 Plant ascorbate peroxidase "; GO:0016688 NbS00002942g0004.1 protein ; (*GB) gi|255573671|ref|XP_002527757.1| (e_value=1e-13) Importin-7, putative [Ricinus communis];; (*ITAG) Solyc09g098240.2.1 (e_value=2e-18) genomic_reference:SL2.40ch09 gene_region:67365058-67377466 transcript_region:SL2.40ch09:67365058..67377466- go_terms:GO:0008536 functional_description:"Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7) (AHRD V1 **** D8LDH6_ECTSI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008536 NbS00002942g0005.1 protein NbS00002942g0006.1 protein NbS00045395g0002.1 protein NbS00004325g0006.1 protein NbS00004325g0007.1 protein NbS00051956g0004.1 protein NbS00028790g0002.1 protein ; (*GB) gi|147800604|emb|CAN68579.1| (e_value=3e-48) hypothetical protein VITISV_034891 [Vitis vinifera];; (*SWP) sp|O22928|PUSH_ARATH (e_value=1e-23) Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1;; (*TAIR) AT2G30320.1 (e_value=1e-24) | Symbols: | Pseudouridine synthase family protein | chr2:12925728-12927896 REVERSE LENGTH=510;; (*ITAG) Solyc09g056260.2.1 (e_value=4e-70) genomic_reference:SL2.40ch09 gene_region:43665438-43678768 transcript_region:SL2.40ch09:43665438..43678768- go_terms:GO:0009982 functional_description:"tRNA pseudouridine synthase family protein (AHRD V1 **** D7LBM5_ARALY); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA "; GO:0009982 NbS00009745g0011.1 protein NbS00009745g0010.1 protein NbC24271880g0001.1 protein ; (*GB) gi|291464067|gb|ADE05571.1| (e_value=2e-47) increased size exclusion limit 1a [Nicotiana benthamiana];; (*SWP) sp|Q10PV9|RH47B_ORYSJ (e_value=1e-37) DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica GN=Os03g0219700 PE=2 SV=1;; (*TAIR) AT1G12770.1 (e_value=4e-38) | Symbols: ISE1, EMB1586 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:4351888-4353543 FORWARD LENGTH=551;; (*ITAG) Solyc08g080550.1.1 (e_value=4e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60991283-60992929 transcript_region:SL2.40ch08:60991283..60992929+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase DeaD (AHRD V1 **** C5ZVH9_9HELI); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0004004 NbS00004300g0002.1 protein ; (*GB) gi|225445949|ref|XP_002264417.1| (e_value=6e-18) PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis vinifera];; (*TAIR) AT4G26000.1 (e_value=2e-13) | Symbols: PEP | RNA-binding KH domain-containing protein | chr4:13197280-13199539 FORWARD LENGTH=495;; (*ITAG) Solyc07g008490.2.1 (e_value=1e-19) genomic_reference:SL2.40ch07 gene_region:3392921-3399097 transcript_region:SL2.40ch07:3392921..3399097- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6TJ76_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00006116g0013.1 protein NbS00006116g0008.1 protein NbS00006116g0010.1 protein NbS00025878g0002.1 protein ; (*GB) gi|255580847|ref|XP_002531243.1| (e_value=9e-59) eukaryotic translation initiation factor, putative [Ricinus communis];; (*SWP) sp|P56286|IF2A_SCHPO (e_value=6e-37) Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif211 PE=1 SV=1;; (*TAIR) AT2G40290.3 (e_value=1e-60) | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829872-16830889 REVERSE LENGTH=241;; (*ITAG) Solyc03g095840.2.1 (e_value=8e-65) genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit "; GO:0005515,GO:0003743 NbS00025878g0003.1 protein ; (*GB) gi|147805689|emb|CAN76150.1| (e_value=4e-26) hypothetical protein VITISV_012671 [Vitis vinifera];; (*SWP) sp|Q7ZTK4|IF2A_XENLA (e_value=6e-16) Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1;; (*TAIR) AT2G40290.1 (e_value=1e-26) | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344;; (*ITAG) Solyc03g095840.2.1 (e_value=3e-29) genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit "; GO:0005515,GO:0003743 NbS00015804g0002.1 protein NbS00037586g0001.1 protein NbS00007200g0004.1 protein NbS00016716g0005.1 protein NbS00004774g0008.1 protein NbS00004774g0009.1 protein NbS00004774g0010.1 protein NbS00019707g0004.1 protein NbS00010752g0102.1 protein NbS00010752g0103.1 protein NbS00005590g0002.1 protein ; (*GB) gi|225456828|ref|XP_002278591.1| (e_value=2e-37) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Vitis vinifera];; (*SWP) sp|Q5ZJ01|F108B_CHICK (e_value=1e-21) Abhydrolase domain-containing protein FAM108B1 OS=Gallus gallus GN=FAM108B1 PE=2 SV=1;; (*TAIR) AT3G01690.1 (e_value=9e-38) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:256753-258379 FORWARD LENGTH=361;; (*ITAG) Solyc02g065700.2.1 (e_value=5e-43) genomic_reference:SL2.40ch02 gene_region:31431050-31434593 transcript_region:SL2.40ch02:31431050..31434593- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00005590g0102.1 protein NbS00005590g0103.1 protein NbS00038946g0001.1 protein NbS00038946g0002.1 protein NbS00033318g0002.1 protein NbS00000115g0003.1 protein NbS00047872g0002.1 protein ; (*GB) gi|225431591|ref|XP_002282621.1| (e_value=1e-52) PREDICTED: pre-mRNA-splicing factor ISY1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q69ZQ2|ISY1_MOUSE (e_value=1e-14) Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1 PE=1 SV=2;; (*TAIR) AT3G18790.1 (e_value=5e-42) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isy1-like splicing (InterPro:IPR009360); Has 1147 Blast hits to 965 proteins in 236 species: Archae - 12; Bacteria - 13; Metazoa - 351; Fungi - 230; Plants - 49; Viruses - 9; Other Eukaryotes - 483 (source: NCBI BLink). | chr3:6477853-6478755 FORWARD LENGTH=300;; (*ITAG) Solyc05g051070.2.1 (e_value=2e-68) genomic_reference:SL2.40ch05 gene_region:60422107-60429626 transcript_region:SL2.40ch05:60422107..60429626- functional_description:"Pre-mRNA-splicing factor ISY1 (AHRD V1 ***- B6T8I4_MAIZE); contains Interpro domain(s) IPR009360 Isy1-like splicing "; NbS00015498g0011.1 protein NbS00015498g0012.1 protein NbS00015498g0009.1 protein NbS00012424g0003.1 protein NbS00051279g0003.1 protein NbS00003370g0004.1 protein NbS00003370g0005.1 protein NbS00033970g0007.1 protein NbS00033970g0008.1 protein NbS00004471g0004.1 protein NbS00004471g0005.1 protein NbS00051219g0002.1 protein NbS00019909g0205.1 protein NbS00047478g0001.1 protein NbS00045067g0004.1 protein ; (*GB) gi|356523179|ref|XP_003530219.1| (e_value=2e-18) PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max];; (*SWP) sp|Q9M2S4|LRKS4_ARATH (e_value=2e-16) L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=1 SV=1;; (*TAIR) AT3G55550.1 (e_value=1e-17) | Symbols: | Concanavalin A-like lectin protein kinase family protein | chr3:20600019-20602073 REVERSE LENGTH=684;; (*ITAG) Solyc05g053010.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:62320694-62322766 transcript_region:SL2.40ch05:62320694..62322766+ go_terms:GO:0005515,GO:0016301 functional_description:"Receptor like protein kinase (AHRD V1 **** Q39139_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0016301 NbS00006303g0107.1 protein NbS00053438g0002.1 protein NbS00041308g0001.1 protein NbS00000488g0003.1 protein NbS00014581g0015.1 protein NbS00014581g0017.1 protein NbS00014581g0009.1 protein NbS00014581g0010.1 protein NbS00049003g0007.1 protein NbC23835500g0001.1 protein ; (*GB) gi|147802492|emb|CAN75158.1| (e_value=1e-38) hypothetical protein VITISV_042645 [Vitis vinifera];; (*SWP) sp|Q9VUV9|U520_DROME (e_value=2e-28) Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4;; (*TAIR) AT1G20960.2 (e_value=2e-34) | Symbols: emb1507 | U5 small nuclear ribonucleoprotein helicase, putative | chr1:7302591-7309914 REVERSE LENGTH=2171;; (*ITAG) Solyc06g082100.2.1 (e_value=1e-44) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00002589g0004.1 protein NbS00008595g0002.1 protein NbS00002959g0001.1 protein NbS00016801g0005.1 protein NbS00016801g0007.1 protein NbS00006262g0006.1 protein NbS00035377g0013.1 protein NbS00035377g0014.1 protein NbS00035377g0010.1 protein ; (*GB) gi|357152874|ref|XP_003576263.1| (e_value=3e-15) PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Brachypodium distachyon]; NbS00026769g0005.1 protein NbS00006508g0021.1 protein ; (*GB) gi|365222926|gb|AEW69815.1| (e_value=5e-46) Hop-interacting protein THI116 [Solanum lycopersicum];; (*SWP) sp|Q501E6|FLOT1_ARATH (e_value=5e-31) Flotillin-like protein 1 OS=Arabidopsis thaliana GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25250.1 (e_value=4e-32) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8749774-8751430 FORWARD LENGTH=470;; (*ITAG) Solyc03g117250.2.1 (e_value=2e-48) genomic_reference:SL2.40ch03 gene_region:60489302-60492373 transcript_region:SL2.40ch03:60489302..60492373- functional_description:"Flotillin 1 (AHRD V1 *-*- B3V5K3_9EURY); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00021537g0001.1 protein NbS00021537g0002.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00018965g0001.1 protein NbS00024537g0005.1 protein NbS00052630g0002.1 protein NbS00020827g0004.1 protein NbS00020827g0006.1 protein NbS00020827g0007.1 protein NbS00035922g0003.1 protein ; (*ITAG) Solyc01g005620.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00035922g0004.1 protein NbS00026787g0003.1 protein NbS00054613g0008.1 protein NbS00012976g0001.1 protein NbS00025598g0002.1 protein NbS00002193g0003.1 protein NbS00002193g0004.1 protein NbS00002193g0006.1 protein NbS00012535g0001.1 protein ; (*GB) gi|15822693|gb|AAL03950.1| (e_value=1e-60) relA/spoT-like protein RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=2e-22) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=1e-50) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=9e-58) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00012535g0002.1 protein NbS00008422g0112.1 protein NbS00000551g0001.1 protein NbS00052496g0013.1 protein NbS00004966g0005.1 protein NbS00004966g0008.1 protein NbS00020256g0010.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=7e-31) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=8e-28) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.2 (e_value=4e-29) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508300-6512701 REVERSE LENGTH=636;; (*ITAG) Solyc09g065210.2.1 (e_value=1e-34) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00036973g0004.1 protein NbS00021545g0001.1 protein ; (*GB) gi|357485893|ref|XP_003613234.1| (e_value=8e-28) Polygalacturonase-1 non-catalytic subunit beta [Medicago truncatula];; (*SWP) sp|P92982|JP630_ARATH (e_value=5e-28) Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2;; (*TAIR) AT1G23760.1 (e_value=4e-29) | Symbols: JP630, PG3 | BURP domain-containing protein | chr1:8402142-8404147 FORWARD LENGTH=622;; (*ITAG) Solyc05g005570.2.1 (e_value=3e-50) genomic_reference:SL2.40ch05 gene_region:407905-410949 transcript_region:SL2.40ch05:407905..410949+ go_terms:GO:0004650 functional_description:"BURP domain-containing protein (Fragment) (AHRD V1 *--- Q94IC5_9ROSI); contains Interpro domain(s) IPR004873 BURP "; GO:0004650 NbS00058996g0003.1 protein NbS00046540g0004.1 protein NbS00001298g0009.1 protein ; (*ITAG) Solyc01g073870.2.1 (e_value=2e-31) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00002554g0104.1 protein NbS00002611g0001.1 protein NbS00001785g0007.1 protein NbS00027627g0003.1 protein NbS00006676g0003.1 protein NbS00020656g0002.1 protein NbS00023626g0002.1 protein NbS00052321g0004.1 protein NbS00049218g0002.1 protein NbS00002994g0005.1 protein NbS00002994g0006.1 protein NbS00009928g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=6e-29) hypothetical protein [Nicotiana tabacum]; NbS00013798g0007.1 protein ; (*GB) gi|359494917|ref|XP_002271060.2| (e_value=1e-18) PREDICTED: uncharacterized protein LOC100249189 [Vitis vinifera];; (*ITAG) Solyc01g104910.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:84985560-84988138 transcript_region:SL2.40ch01:84985560..84988138- functional_description:"Os11g0223400 protein (Fragment) (AHRD V1 *--- Q0ITS2_ORYSJ)"; NbS00013798g0008.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=1e-21) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc05g021350.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00013798g0010.1 protein NbS00028530g0003.1 protein NbS00016839g0011.1 protein NbS00025348g0004.1 protein ; (*ITAG) Solyc01g107130.2.1 (e_value=1e-13) genomic_reference:SL2.40ch01 gene_region:86507024-86513290 transcript_region:SL2.40ch01:86507024..86513290+ go_terms:GO:0005509 functional_description:"Vacuolar sorting receptor (AHRD V1 ***- Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005509 NbS00000514g0004.1 protein NbC23626727g0001.1 protein ; (*GB) gi|149927351|ref|ZP_01915606.1| (e_value=2e-40) ATPase involved in chromosome partitioning [Limnobacter sp. MED105];; (*SWP) sp|P72190|YCAB_PSEFR (e_value=2e-30) Uncharacterized ATP-binding protein in capB 3'region OS=Pseudomonas fragi PE=3 SV=1;; (*TAIR) AT4G19540.1 (e_value=1e-23) | Symbols: INDL | IND1(iron-sulfur protein required for NADH dehydrogenase)-like | chr4:10657517-10659094 FORWARD LENGTH=313;; (*ITAG) Solyc06g083990.2.1 (e_value=9e-22) genomic_reference:SL2.40ch06 gene_region:45555489-45559957 transcript_region:SL2.40ch06:45555489..45559957+ go_terms:GO:0042803 functional_description:"Cytosolic Fe-S cluster assembly factor NUBP1 homolog (AHRD V1 **-- NUBP1_DICDI); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0042803 NbS00039832g0001.1 protein ; (*ITAG) Solyc07g056690.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61810691-61815877 transcript_region:SL2.40ch07:61810691..61815877- go_terms:GO:0005515 functional_description:"Carboxyl-terminal peptidase (AHRD V1 ***- B6TV70_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00013904g0003.1 protein ; (*GB) gi|225460048|ref|XP_002273755.1| (e_value=4e-20) PREDICTED: SCY1-like protein 2 [Vitis vinifera];; (*TAIR) AT1G71410.1 (e_value=6e-22) | Symbols: | ARM repeat superfamily protein | chr1:26913070-26917515 REVERSE LENGTH=909;; (*ITAG) Solyc11g042990.1.1 (e_value=1e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00046137g0001.1 protein NbS00044903g0006.1 protein NbS00031387g0002.1 protein NbS00003475g0002.1 protein NbS00003475g0003.1 protein NbS00001141g0003.1 protein NbS00040871g0002.1 protein NbS00016336g0005.1 protein NbS00030428g0003.1 protein NbS00001724g0007.1 protein NbS00013181g0001.1 protein NbS00041902g0004.1 protein NbS00001868g0002.1 protein NbS00029080g0001.1 protein NbS00029080g0003.1 protein NbS00004797g0005.1 protein ; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=5e-19) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*TAIR) AT5G65960.1 (e_value=1e-18) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=3e-31) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00010491g0009.1 protein NbS00022486g0003.1 protein NbS00022486g0004.1 protein NbS00022486g0005.1 protein NbS00001584g0004.1 protein NbS00038889g0003.1 protein NbS00031234g0002.1 protein NbS00016038g0003.1 protein NbS00016038g0004.1 protein NbS00016038g0005.1 protein ; (*GB) gi|10798638|emb|CAC12819.1| (e_value=2e-28) cysteine synthase [Nicotiana tabacum];; (*SWP) sp|Q43317|CYSK_CITLA (e_value=2e-23) Cysteine synthase OS=Citrullus lanatus PE=1 SV=1;; (*TAIR) AT5G28030.1 (e_value=5e-25) | Symbols: DES1 | L-cysteine desulfhydrase 1 | chr5:10030493-10032285 REVERSE LENGTH=323;; (*ITAG) Solyc01g097920.2.1 (e_value=9e-29) genomic_reference:SL2.40ch01 gene_region:80358782-80365636 transcript_region:SL2.40ch01:80358782..80365636+ go_terms:GO:0008152,GO:0006535 functional_description:"Cysteine synthase (AHRD V1 ***- Q9FSF5_TOBAC); contains Interpro domain(s) IPR005859 Cysteine synthase A "; GO:0008152,GO:0006535 NbS00014260g0015.1 protein NbS00014260g0007.1 protein NbC24300479g0001.1 protein ; (*GB) gi|224062688|ref|XP_002300874.1| (e_value=8e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYS6|CALS6_ARATH (e_value=3e-27) Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3 SV=2;; (*TAIR) AT3G59100.1 (e_value=2e-28) | Symbols: ATGSL11, gsl11 | glucan synthase-like 11 | chr3:21843407-21853860 FORWARD LENGTH=1921;; (*ITAG) Solyc07g056260.2.1 (e_value=7e-46) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00020839g0002.1 protein NbC24608926g0002.1 protein NbS00001319g0005.1 protein NbS00001319g0211.1 protein NbS00001319g0209.1 protein NbC24073411g0001.1 protein ; (*GB) gi|255561989|ref|XP_002522003.1| (e_value=1e-26) protein with unknown function [Ricinus communis];; (*SWP) sp|Q9M0G7|PXL2_ARATH (e_value=4e-24) Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1;; (*TAIR) AT4G28650.1 (e_value=3e-25) | Symbols: | Leucine-rich repeat transmembrane protein kinase family protein | chr4:14144155-14147276 REVERSE LENGTH=1013;; (*ITAG) Solyc04g050170.2.1 (e_value=2e-33) genomic_reference:SL2.40ch04 gene_region:44894101-44897749 transcript_region:SL2.40ch04:44894101..44897749+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00044343g0002.1 protein NbS00008013g0003.1 protein NbS00037178g0002.1 protein NbS00002851g0002.1 protein NbS00000656g0004.1 protein NbS00000656g0005.1 protein NbS00034831g0004.1 protein NbS00014150g0007.1 protein NbS00057577g0001.1 protein NbS00013391g0003.1 protein NbS00026564g0004.1 protein NbS00054392g0006.1 protein NbS00046723g0002.1 protein NbS00041954g0004.1 protein NbS00041954g0005.1 protein NbS00002109g0009.1 protein NbS00003748g0002.1 protein NbC26249828g0002.1 protein NbS00010186g0014.1 protein NbS00017067g0004.1 protein NbS00006803g0006.1 protein NbS00006803g0010.1 protein NbS00024250g0003.1 protein NbS00013805g0005.1 protein ; (*GB) gi|255578220|ref|XP_002529978.1| (e_value=3e-81) gulonolactone oxidase, putative [Ricinus communis];; (*TAIR) AT2G46760.1 (e_value=7e-75) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr2:19213028-19215166 REVERSE LENGTH=603;; (*ITAG) Solyc09g005180.2.1 (e_value=3e-98) genomic_reference:SL2.40ch09 gene_region:163704-166272 transcript_region:SL2.40ch09:163704..166272+ go_terms:GO:0016020,GO:0050660 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7LF85_ARALY); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00002232g0005.1 protein NbS00007613g0009.1 protein NbS00045528g0002.1 protein NbC23920609g0001.1 protein ; (*GB) gi|356523870|ref|XP_003530557.1| (e_value=3e-19) PREDICTED: ABC transporter B family member 2-like [Glycine max];; (*SWP) sp|Q9SGY1|AB10B_ARATH (e_value=7e-20) ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2;; (*TAIR) AT1G10680.1 (e_value=5e-21) | Symbols: PGP10 | P-glycoprotein 10 | chr1:3538470-3543782 REVERSE LENGTH=1227;; (*ITAG) Solyc08g076720.2.1 (e_value=1e-21) genomic_reference:SL2.40ch08 gene_region:57827103-57836786 transcript_region:SL2.40ch08:57827103..57836786- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein TM_0288 (AHRD V1 *--* Y288_THEMA); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00017821g0003.1 protein NbS00017821g0008.1 protein NbS00056011g0003.1 protein NbS00056011g0004.1 protein NbS00021185g0001.1 protein NbS00054461g0002.1 protein ; (*ITAG) Solyc04g058030.1.1 (e_value=8e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54305390-54307553 transcript_region:SL2.40ch04:54305390..54307553+ go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 **-- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00026491g0001.1 protein NbS00016711g0003.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=2e-36) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00038679g0003.1 protein NbS00022892g0009.1 protein NbC24577961g0001.1 protein ; (*GB) gi|356531892|ref|XP_003534510.1| (e_value=6e-88) PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Glycine max];; (*SWP) sp|Q4R6R4|BZW2_MACFA (e_value=4e-12) Basic leucine zipper and W2 domain-containing protein 2 OS=Macaca fascicularis GN=BZW2 PE=2 SV=1;; (*TAIR) AT5G36230.1 (e_value=1e-84) | Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411;; (*ITAG) Solyc05g055770.2.1 (e_value=3e-89) genomic_reference:SL2.40ch05 gene_region:64423607-64429627 transcript_region:SL2.40ch05:64423607..64429627+ go_terms:GO:0031369 functional_description:"Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 **-- A8N5N1_COPC7); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0031369 NbS00006147g0006.1 protein NbS00019760g0005.1 protein NbS00016568g0011.1 protein NbC23864313g0001.1 protein ; (*GB) gi|357462887|ref|XP_003601725.1| (e_value=1e-39) Protein transport protein Sec23 [Medicago truncatula];; (*SWP) sp|Q6BQT6|SEC23_DEBHA (e_value=3e-23) Protein transport protein SEC23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SEC23 PE=3 SV=1;; (*TAIR) AT1G05520.1 (e_value=3e-40) | Symbols: | Sec23/Sec24 protein transport family protein | chr1:1631126-1635703 REVERSE LENGTH=783;; (*ITAG) Solyc05g053830.2.1 (e_value=2e-43) genomic_reference:SL2.40ch05 gene_region:63004325-63011970 transcript_region:SL2.40ch05:63004325..63011970- go_terms:GO:0005515,GO:0005096 functional_description:"Protein transport protein Sec23 (AHRD V1 ***- Q9LUG1_ARATH); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515,GO:0005096 NbS00005943g0004.1 protein NbS00026976g0002.1 protein NbS00017980g0002.1 protein NbS00013890g0008.1 protein NbS00013453g0001.1 protein NbS00050732g0003.1 protein ; (*GB) gi|255540257|ref|XP_002511193.1| (e_value=9e-45) Exocyst complex component, putative [Ricinus communis];; (*SWP) sp|Q5PNS9|P2C64_ARATH (e_value=6e-13) Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1;; (*TAIR) AT5G50380.1 (e_value=1e-35) | Symbols: ATEXO70F1, EXO70F1 | exocyst subunit exo70 family protein F1 | chr5:20516382-20518433 REVERSE LENGTH=683;; (*ITAG) Solyc03g111320.1.1 (e_value=3e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:55986032-55988029 transcript_region:SL2.40ch03:55986032..55988029+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00025216g0001.1 protein NbS00031791g0011.1 protein NbS00031791g0007.1 protein NbS00050684g0003.1 protein NbS00023806g0002.1 protein NbS00006258g0006.1 protein NbC25015814g0002.1 protein NbS00018331g0005.1 protein NbS00018331g0006.1 protein NbS00018331g0007.1 protein NbS00045000g0004.1 protein NbS00046623g0007.1 protein NbS00022661g0002.1 protein ; (*GB) gi|225456443|ref|XP_002280705.1| (e_value=1e-18) PREDICTED: uncharacterized protein LOC100266395 [Vitis vinifera];; (*ITAG) Solyc03g097710.2.1 (e_value=2e-52) genomic_reference:SL2.40ch03 gene_region:53499139-53506306 transcript_region:SL2.40ch03:53499139..53506306+ functional_description:"Genomic DNA chromosome 5 P1 clone MEE6 (AHRD V1 *-*- Q9FLL8_ARATH)"; NbS00048878g0010.1 protein ; (*GB) gi|147862641|emb|CAN81488.1| (e_value=3e-103) hypothetical protein VITISV_033286 [Vitis vinifera];; (*TAIR) AT2G32240.1 (e_value=2e-57) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333;; (*ITAG) Solyc07g043320.2.1 (e_value=0.0) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbS00042231g0004.1 protein ; (*GB) gi|297824733|ref|XP_002880249.1| (e_value=2e-17) hypothetical protein ARALYDRAFT_904119 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=4e-18) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=3e-19) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=3e-24) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00007990g0015.1 protein NbS00020258g0018.1 protein NbS00020258g0008.1 protein NbS00028367g0003.1 protein NbS00002483g0001.1 protein ; (*ITAG) Solyc05g052920.2.1 (e_value=3e-15) genomic_reference:SL2.40ch05 gene_region:62240025-62249726 transcript_region:SL2.40ch05:62240025..62249726- go_terms:GO:0004326 functional_description:"Folylpolyglutamate synthase (AHRD V1 **** B9HMM6_POPTR); contains Interpro domain(s) IPR001645 Folylpolyglutamate synthetase "; GO:0004326 NbS00004009g0003.1 protein NbS00004009g0103.1 protein NbS00019108g0101.1 protein NbC26154970g0003.1 protein NbC26154970g0005.1 protein NbS00015780g0003.1 protein NbS00012001g0004.1 protein NbS00023532g0003.1 protein NbS00023532g0006.1 protein NbS00021427g0010.1 protein NbC25519724g0001.1 protein ; (*ITAG) Solyc07g018000.2.1 (e_value=8e-24) genomic_reference:SL2.40ch07 gene_region:8779431-8791044 transcript_region:SL2.40ch07:8779431..8791044+ go_terms:GO:0005622 functional_description:"DNA ligase (AHRD V1 ***- B9IN68_POPTR); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00029631g0002.1 protein ; (*GB) gi|323370547|gb|ADX43928.1| (e_value=3e-17) ADR1 [Solanum tuberosum];; (*ITAG) Solyc04g079420.2.1 (e_value=1e-20) genomic_reference:SL2.40ch04 gene_region:61521424-61524959 transcript_region:SL2.40ch04:61521424..61524959+ go_terms:GO:0016301 functional_description:"Nbs-lrr, resistance protein"; GO:0016301 NbS00009503g0003.1 protein ; (*GB) gi|147837980|emb|CAN71635.1| (e_value=9e-42) hypothetical protein VITISV_030852 [Vitis vinifera];; (*SWP) sp|Q9SXP7|LIPB_ARATH (e_value=6e-39) Octanoyltransferase OS=Arabidopsis thaliana GN=LIP2 PE=1 SV=1;; (*TAIR) AT1G04640.2 (e_value=5e-40) | Symbols: LIP2 | lipoyltransferase 2 | chr1:1292541-1293248 FORWARD LENGTH=235;; (*ITAG) Solyc02g077460.1.1 (e_value=4e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36971744-36972394 transcript_region:SL2.40ch02:36971744..36972394- go_terms:GO:0033819 functional_description:"Octanoyltransferase (AHRD V1 ***- A9AV27_HERA2); contains Interpro domain(s) IPR000544 Lipoate-protein ligase B "; GO:0033819 NbS00040128g0001.1 protein NbS00034384g0108.1 protein NbS00034384g0109.1 protein NbS00031906g0001.1 protein NbS00031906g0002.1 protein NbS00031906g0003.1 protein NbS00010417g0005.1 protein ; (*GB) gi|118486315|gb|ABK94999.1| (e_value=3e-21) unknown [Populus trichocarpa];; (*TAIR) AT4G39690.1 (e_value=7e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:18417755-18421633 FORWARD LENGTH=650;; (*ITAG) Solyc04g054470.2.1 (e_value=3e-38) genomic_reference:SL2.40ch04 gene_region:51708018-51719444 transcript_region:SL2.40ch04:51708018..51719444+ functional_description:"Myosin class II heavy chain (ISS) (AHRD V1 *-*- Q014V4_OSTTA)"; NbS00010417g0006.1 protein NbS00029305g0004.1 protein ; (*ITAG) Solyc03g122250.2.1 (e_value=6e-22) genomic_reference:SL2.40ch03 gene_region:64185690-64190037 transcript_region:SL2.40ch03:64185690..64190037- go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00022129g0004.1 protein ; (*GB) gi|359494410|ref|XP_002266179.2| (e_value=4e-27) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Vitis vinifera];; (*TAIR) AT1G17110.2 (e_value=1e-11) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=928;; (*ITAG) Solyc07g061780.2.1 (e_value=9e-69) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbC23839216g0001.1 protein ; (*GB) gi|296082128|emb|CBI21133.3| (e_value=9e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SK28|FH18_ARATH (e_value=6e-29) Formin-like protein 18 OS=Arabidopsis thaliana GN=FH18 PE=2 SV=2;; (*TAIR) AT2G25050.2 (e_value=4e-30) | Symbols: | Actin-binding FH2 (Formin Homology) protein | chr2:10654108-10659383 REVERSE LENGTH=1135;; (*ITAG) Solyc07g005500.2.1 (e_value=1e-37) genomic_reference:SL2.40ch07 gene_region:392429-397495 transcript_region:SL2.40ch07:392429..397495- functional_description:"Formin 2B (AHRD V1 **-- C7BGM9_PHYPA); contains Interpro domain(s) IPR014020 Tensin phosphatase, C2 domain "; NbS00039697g0002.1 protein NbS00039697g0004.1 protein NbS00048408g0002.1 protein NbS00048408g0004.1 protein ; (*GB) gi|356516269|ref|XP_003526818.1| (e_value=4e-28) PREDICTED: uncharacterized protein LOC100788678 [Glycine max]; NbS00052265g0002.1 protein ; (*GB) gi|147794338|emb|CAN76000.1| (e_value=9e-13) hypothetical protein VITISV_019164 [Vitis vinifera]; NbS00041863g0007.1 protein NbS00005777g0002.1 protein NbS00051844g0002.1 protein NbS00031588g0006.1 protein NbS00032238g0002.1 protein NbS00032238g0003.1 protein NbS00057443g0001.1 protein ; (*GB) gi|6714389|gb|AAF26078.1|AC012393_4 (e_value=7e-52) hypothetical protein [Arabidopsis thaliana];; (*SWP) sp|Q9CPW7|ZMAT2_MOUSE (e_value=3e-31) Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2 SV=1;; (*TAIR) AT3G05760.2 (e_value=2e-53) | Symbols: | C2H2 and C2HC zinc fingers superfamily protein | chr3:1707981-1709846 FORWARD LENGTH=153;; (*ITAG) Solyc01g100330.2.1 (e_value=7e-55) genomic_reference:SL2.40ch01 gene_region:82155691-82161827 transcript_region:SL2.40ch01:82155691..82161827+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger matrin type 2 (AHRD V1 ***- Q6DEN8_XENTR); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00043373g0001.1 protein ; (*GB) gi|297845704|ref|XP_002890733.1| (e_value=9e-20) T17H3.9 [Arabidopsis lyrata subsp. lyrata];; (*ITAG) Solyc04g076910.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:59434318-59452425 transcript_region:SL2.40ch04:59434318..59452425+ functional_description:"Symplekin (AHRD V1 *-*- B0WVE7_CULQU)"; NbS00021587g0004.1 protein NbS00021587g0005.1 protein NbS00058865g0001.1 protein ; (*GB) gi|356521600|ref|XP_003529442.1| (e_value=2e-28) PREDICTED: LOB domain-containing protein 4-like [Glycine max];; (*SWP) sp|Q8LBW3|LBD12_ARATH (e_value=2e-25) LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2;; (*TAIR) AT2G30130.1 (e_value=1e-26) | Symbols: ASL5, LBD12, PCK1 | Lateral organ boundaries (LOB) domain family protein | chr2:12868740-12869684 FORWARD LENGTH=193;; (*ITAG) Solyc02g069440.2.1 (e_value=1e-36) genomic_reference:SL2.40ch02 gene_region:33912638-33915345 transcript_region:SL2.40ch02:33912638..33915345+ go_terms:GO:0005515,GO:0003677 functional_description:"LOB domain protein 4 (AHRD V1 ***- D7KL24_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515,GO:0003677 NbC25790268g0001.1 protein ; (*ITAG) Solyc09g018160.2.1 (e_value=3e-16) genomic_reference:SL2.40ch09 gene_region:13379149-13391907 transcript_region:SL2.40ch09:13379149..13391907+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00026887g0004.1 protein NbS00012780g0008.1 protein NbS00039239g0006.1 protein NbS00007568g0008.1 protein NbS00017065g0002.1 protein ; (*GB) gi|224119558|ref|XP_002331190.1| (e_value=2e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT3G14270.1 (e_value=3e-30) | Symbols: FAB1B | phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:4754624-4761185 FORWARD LENGTH=1791;; (*ITAG) Solyc07g017510.2.1 (e_value=6e-71) genomic_reference:SL2.40ch07 gene_region:7403047-7425731 transcript_region:SL2.40ch07:7403047..7425731+ go_terms:GO:0016308,GO:0035091 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 **-* D7L328_ARALY); contains Interpro domain(s) IPR016034 Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup "; GO:0016308,GO:0035091 NbS00003183g0007.1 protein NbS00003183g0008.1 protein NbS00003183g0009.1 protein NbS00011643g0009.1 protein NbS00011643g0010.1 protein NbS00043958g0004.1 protein NbS00011428g0005.1 protein NbS00011428g0111.1 protein NbS00011428g0113.1 protein NbS00011428g0115.1 protein NbS00011428g0116.1 protein NbS00004500g0005.1 protein NbS00004500g0008.1 protein ; (*GB) gi|356501616|ref|XP_003519620.1| (e_value=2e-18) PREDICTED: DUF21 domain-containing protein At1g55930, chloroplastic-like [Glycine max];; (*SWP) sp|Q84R21|Y1559_ARATH (e_value=4e-13) DUF21 domain-containing protein At1g55930, chloroplastic OS=Arabidopsis thaliana GN=CBSDUFCH2 PE=2 SV=2;; (*TAIR) AT1G55930.1 (e_value=3e-14) | Symbols: | CBS domain-containing protein / transporter associated domain-containing protein | chr1:20918895-20922133 FORWARD LENGTH=653;; (*ITAG) Solyc07g065310.2.1 (e_value=3e-21) genomic_reference:SL2.40ch07 gene_region:64344445-64352893 transcript_region:SL2.40ch07:64344445..64352893- functional_description:"Magnesium and cobalt efflux protein corC (AHRD V1 *--- Q7P7S7_FUSNV); contains Interpro domain(s) IPR002550 Protein of unknown function DUF21 "; NbS00004500g0010.1 protein NbS00056428g0001.1 protein NbS00036564g0006.1 protein NbS00000153g0006.1 protein NbS00000153g0007.1 protein NbS00000153g0008.1 protein NbS00000153g0010.1 protein NbS00030163g0002.1 protein NbS00004454g0002.1 protein ; (*GB) gi|138996985|dbj|BAF52855.1| (e_value=2e-21) repressor of silencing 1 [Nicotiana tabacum]; NbS00037055g0001.1 protein NbS00031427g0001.1 protein NbS00060021g0001.1 protein NbS00004524g0006.1 protein NbS00047485g0007.1 protein ; (*ITAG) Solyc12g042630.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43420409-43423973 transcript_region:SL2.40ch12:43420409..43423973- functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00047485g0009.1 protein NbS00011371g0014.1 protein NbS00011371g0016.1 protein NbS00011371g0009.1 protein ; (*GB) gi|147775862|emb|CAN69298.1| (e_value=4e-18) hypothetical protein VITISV_043412 [Vitis vinifera];; (*SWP) sp|Q9LSW9|ATL16_ARATH (e_value=1e-15) RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1;; (*TAIR) AT5G43420.1 (e_value=1e-16) | Symbols: | RING/U-box superfamily protein | chr5:17451790-17452917 FORWARD LENGTH=375;; (*ITAG) Solyc09g089890.1.1 (e_value=4e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64853281-64854330 transcript_region:SL2.40ch09:64853281..64854330- go_terms:GO:0008270 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00029182g0002.1 protein ; (*GB) gi|224125014|ref|XP_002319481.1| (e_value=6e-77) predicted protein [Populus trichocarpa];; (*TAIR) AT1G56500.1 (e_value=3e-61) | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr1:21159775-21167092 FORWARD LENGTH=1055;; (*ITAG) Solyc01g100650.2.1 (e_value=3e-110) genomic_reference:SL2.40ch01 gene_region:82378816-82399452 transcript_region:SL2.40ch01:82378816..82399452+ go_terms:GO:0016787,GO:0008152,GO:0016491,GO:0045454 functional_description:"NHL repeat containing 2 (AHRD V1 *--- B2RR26_MOUSE); contains Interpro domain(s) IPR011042 Six-bladed beta-propeller, TolB-like "; GO:0016787,GO:0008152,GO:0016491,GO:0045454 NbS00032813g0003.1 protein NbS00008756g0106.1 protein NbS00008756g0109.1 protein NbS00008756g0110.1 protein NbS00048993g0001.1 protein NbS00062223g0001.1 protein ; (*ITAG) Solyc02g086050.2.1 (e_value=1e-15) genomic_reference:SL2.40ch02 gene_region:43422137-43425124 transcript_region:SL2.40ch02:43422137..43425124+ go_terms:GO:0034020 functional_description:"Homology to unknown gene (Fragment) (AHRD V1 *-*- Q01BV2_OSTTA)"; GO:0034020 NbS00005834g0201.1 protein NbS00005834g0202.1 protein NbC24930174g0001.1 protein ; (*GB) gi|255545359|ref|XP_002513740.1| (e_value=1e-32) strictosidine synthase, putative [Ricinus communis];; (*TAIR) AT1G08470.1 (e_value=2e-31) | Symbols: SSL3 | strictosidine synthase-like 3 | chr1:2682262-2683977 REVERSE LENGTH=390;; (*ITAG) Solyc11g071800.1.1 (e_value=9e-46) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:52240857-52244873 transcript_region:SL2.40ch11:52240857..52244873- go_terms:GO:0009058 functional_description:"Strictosidine synthase family protein (AHRD V1 ***- D7KIS3_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0009058 NbS00026584g0005.1 protein NbS00000805g0213.1 protein NbS00003795g0002.1 protein ; (*TAIR) AT3G09350.3 (e_value=2e-14) | Symbols: Fes1A | Fes1A | chr3:2871710-2873109 FORWARD LENGTH=327;; (*ITAG) Solyc09g011030.2.1 (e_value=8e-18) genomic_reference:SL2.40ch09 gene_region:4368272-4373182 transcript_region:SL2.40ch09:4368272..4373182- go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- C8V0S6_EMENI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00013150g0003.1 protein ; (*GB) gi|224128846|ref|XP_002320436.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G55290.2 (e_value=2e-13) | Symbols: | ATPase, V0 complex, subunit E | chr5:22423037-22424086 REVERSE LENGTH=70;; (*ITAG) Solyc07g049710.2.1 (e_value=3e-15) genomic_reference:SL2.40ch07 gene_region:57380031-57384945 transcript_region:SL2.40ch07:57380031..57384945- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit e (AHRD V1 **** VA0E_CAEEL); contains Interpro domain(s) IPR008389 ATPase, V0 complex, subunit E "; GO:0005515,GO:0046961 NbS00002916g0003.1 protein NbS00044197g0005.1 protein NbS00044197g0006.1 protein ; (*ITAG) Solyc07g007500.2.1 (e_value=5e-21) genomic_reference:SL2.40ch07 gene_region:2194733-2198762 transcript_region:SL2.40ch07:2194733..2198762+ functional_description:"Unknown Protein (AHRD V1)"; NbS00044197g0007.1 protein NbS00044957g0002.1 protein NbS00012962g0007.1 protein ; (*ITAG) Solyc11g012810.1.1 (e_value=5e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5572669-5592438 transcript_region:SL2.40ch11:5572669..5592438+ functional_description:"Unknown Protein (AHRD V1)"; NbS00016949g0003.1 protein NbS00031624g0011.1 protein NbS00031624g0004.1 protein NbS00006565g0009.1 protein ; (*ITAG) Solyc05g005030.2.1 (e_value=8e-40) genomic_reference:SL2.40ch05 gene_region:51599-52893 transcript_region:SL2.40ch05:51599..52893- functional_description:"Unknown Protein (AHRD V1)"; NbS00027361g0004.1 protein NbS00027361g0008.1 protein NbS00039760g0001.1 protein NbS00023953g0004.1 protein NbS00053122g0002.1 protein NbS00053122g0004.1 protein NbS00053122g0005.1 protein ; (*ITAG) Solyc10g086340.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00027353g0014.1 protein NbS00006449g0004.1 protein ; (*GB) gi|228481109|gb|ACQ42253.1| (e_value=1e-41) SnRK2 calcium sensor [Nicotiana plumbaginifolia];; (*TAIR) AT4G38810.2 (e_value=1e-24) | Symbols: | Calcium-binding EF-hand family protein | chr4:18115607-18118860 REVERSE LENGTH=375;; (*ITAG) Solyc01g111040.2.1 (e_value=4e-40) genomic_reference:SL2.40ch01 gene_region:89209383-89212670 transcript_region:SL2.40ch01:89209383..89212670+ go_terms:GO:0005509 functional_description:"EF-Hand containing protein-like (AHRD V1 ***- Q9T0I9_ARATH); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00006449g0006.1 protein NbS00008969g0004.1 protein ; (*ITAG) Solyc01g081630.2.1 (e_value=2e-25) genomic_reference:SL2.40ch01 gene_region:73337518-73342163 transcript_region:SL2.40ch01:73337518..73342163+ functional_description:"Auxin-regulated protein (AHRD V1 *-*- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00006687g0004.1 protein ; (*GB) gi|75261516|sp|Q6L3L0.1|R1B23_SOLDE (e_value=2e-17) RecName: Full=Putative late blight resistance protein homolog R1B-23;; (*SWP) sp|Q6L3L0|R1B23_SOLDE (e_value=6e-19) Putative late blight resistance protein homolog R1B-23 OS=Solanum demissum GN=R1B-23 PE=3 SV=1;; (*ITAG) Solyc05g007170.2.1 (e_value=1e-15) genomic_reference:SL2.40ch05 gene_region:1779356-1787568 transcript_region:SL2.40ch05:1779356..1787568+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00015472g0003.1 protein ; (*GB) gi|297806295|ref|XP_002871031.1| (e_value=8e-56) histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q5UXW4|SYH_HALMA (e_value=2e-21) Histidine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=hisS PE=3 SV=1;; (*TAIR) AT3G46100.1 (e_value=2e-58) | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486;; (*ITAG) Solyc03g119280.2.1 (e_value=3e-59) genomic_reference:SL2.40ch03 gene_region:61963971-61972631 transcript_region:SL2.40ch03:61963971..61972631- go_terms:GO:0003879,GO:0030234 functional_description:"Histidyl-tRNA synthetase 1 (AHRD V1 ***- D7LWN6_ARALY); contains Interpro domain(s) IPR015807 Histidyl-tRNA synthetase, class IIa, subgroup "; GO:0003879,GO:0030234 NbS00024401g0001.1 protein NbS00056308g0002.1 protein NbS00038176g0006.1 protein NbS00038176g0007.1 protein NbS00001371g0002.1 protein NbS00030309g0004.1 protein NbS00021880g0004.1 protein NbS00020927g0001.1 protein ; (*ITAG) Solyc12g010800.1.1 (e_value=3e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3715930-3717269 transcript_region:SL2.40ch12:3715930..3717269- go_terms:GO:0005634,GO:0006355 functional_description:"BZIP transcription factor family protein (AHRD V1 ***- D7LW03_ARALY); contains Interpro domain(s) IPR011700 Basic leucine zipper "; GO:0005634,GO:0006355 NbS00010284g0002.1 protein NbS00000152g0008.1 protein NbS00016150g0009.1 protein ; (*ITAG) Solyc06g011460.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00022277g0003.1 protein NbS00013298g0003.1 protein NbS00048442g0005.1 protein ; (*ITAG) Solyc03g114700.1.1 (e_value=6e-41) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:58653330-58654738 transcript_region:SL2.40ch03:58653330..58654738+ functional_description:"Unknown Protein (AHRD V1)"; NbS00048442g0007.1 protein NbS00044170g0006.1 protein NbS00029013g0005.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00012434g0003.1 protein NbS00012434g0004.1 protein NbS00030225g0004.1 protein NbS00032571g0005.1 protein ; (*GB) gi|296081970|emb|CBI20975.3| (e_value=7e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G32530.1 (e_value=5e-16) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr4:15693399-15694958 REVERSE LENGTH=180;; (*ITAG) Solyc06g067880.2.1 (e_value=1e-21) genomic_reference:SL2.40ch06 gene_region:38458796-38460935 transcript_region:SL2.40ch06:38458796..38460935+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00032821g0006.1 protein NbS00032821g0007.1 protein NbS00032821g0008.1 protein NbS00016026g0007.1 protein ; (*GB) gi|298111984|gb|ADI58371.1| (e_value=3e-24) pentatricopeptide repeat-containing protein [Capsicum annuum];; (*ITAG) Solyc04g082320.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:63619395-63628091 transcript_region:SL2.40ch04:63619395..63628091- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7RNT7_CAPAN); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbC23464925g0001.1 protein ; (*GB) gi|68449764|gb|AAY97869.1| (e_value=4e-18) ACI49 [Solanum lycopersicum];; (*TAIR) AT3G09520.1 (e_value=4e-18) | Symbols: ATEXO70H4, EXO70H4 | exocyst subunit exo70 family protein H4 | chr3:2923743-2925629 FORWARD LENGTH=628;; (*ITAG) Solyc09g005840.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00003213g0002.1 protein NbS00006087g0006.1 protein NbS00019460g0004.1 protein ; (*GB) gi|356509521|ref|XP_003523496.1| (e_value=3e-31) PREDICTED: subtilisin-like protease-like [Glycine max];; (*SWP) sp|O65351|SUBL_ARATH (e_value=5e-13) Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1;; (*TAIR) AT4G34980.1 (e_value=2e-29) | Symbols: SLP2 | subtilisin-like serine protease 2 | chr4:16656929-16659223 REVERSE LENGTH=764;; (*ITAG) Solyc01g111400.2.1 (e_value=1e-39) genomic_reference:SL2.40ch01 gene_region:89421657-89424361 transcript_region:SL2.40ch01:89421657..89424361+ go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 **-- A9XG40_TOBAC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00019460g0006.1 protein NbS00019460g0007.1 protein NbS00019460g0009.1 protein ; (*GB) gi|224067096|ref|XP_002302353.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g088130.1.1 (e_value=1e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62032258-62034043 transcript_region:SL2.40ch12:62032258..62034043- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- A9YWR2_MEDTR); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00022318g0109.1 protein NbS00011107g0002.1 protein NbS00000828g0011.1 protein NbS00000828g0014.1 protein NbS00000828g0007.1 protein ; (*TAIR) AT1G02120.1 (e_value=2e-12) | Symbols: VAD1 | GRAM domain family protein | chr1:395761-399720 FORWARD LENGTH=598;; (*ITAG) Solyc01g090230.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:75636426-75660453 transcript_region:SL2.40ch01:75636426..75660453- functional_description:"GRAM domain containing protein (AHRD V1 *-*- B4FWB9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbC23689612g0001.1 protein ; (*GB) gi|188532151|gb|ACD63087.1| (e_value=7e-36) RNA polymerase II largest subunit [Nicotiana tabacum];; (*SWP) sp|P18616|RPB1_ARATH (e_value=3e-26) DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana GN=RPB205 PE=1 SV=3;; (*TAIR) AT4G35800.1 (e_value=2e-27) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839;; (*ITAG) Solyc02g083350.2.1 (e_value=1e-36) genomic_reference:SL2.40ch02 gene_region:41367508-41376061 transcript_region:SL2.40ch02:41367508..41376061- go_terms:GO:0031625 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SXC0_RICCO); contains Interpro domain(s) IPR006592 RNA polymerase, N-terminal "; GO:0031625 NbS00014641g0002.1 protein NbS00037787g0002.1 protein NbS00007056g0002.1 protein NbS00028284g0005.1 protein NbS00011546g0006.1 protein NbS00052408g0001.1 protein ; (*GB) gi|297821645|ref|XP_002878705.1| (e_value=1e-31) hypothetical protein ARALYDRAFT_900875 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT2G23890.1 (e_value=2e-33) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553;; (*ITAG) Solyc07g006190.2.1 (e_value=3e-42) genomic_reference:SL2.40ch07 gene_region:1015061-1025947 transcript_region:SL2.40ch07:1015061..1025947- go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-nucleotidase (AHRD V1 **** D3B8C8_POLPA); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00006986g0005.1 protein ; (*GB) gi|302143141|emb|CBI20436.3| (e_value=8e-17) unnamed protein product [Vitis vinifera]; NbS00019610g0001.1 protein NbS00051134g0004.1 protein ; (*GB) gi|2459817|gb|AAC28906.1| (e_value=8e-16) polygalacturonase 5 [Solanum lycopersicum];; (*SWP) sp|P48979|PGLR_PRUPE (e_value=3e-12) Polygalacturonase OS=Prunus persica PE=2 SV=1;; (*TAIR) AT2G43890.1 (e_value=8e-17) | Symbols: | Pectin lyase-like superfamily protein | chr2:18176924-18178390 FORWARD LENGTH=392;; (*ITAG) Solyc08g014560.1.1 (e_value=1e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:4650562-4654908 transcript_region:SL2.40ch08:4650562..4654908+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00017435g0003.1 protein NbS00017435g0005.1 protein NbS00011211g0011.1 protein NbS00011211g0012.1 protein NbS00011211g0005.1 protein NbS00011211g0007.1 protein NbS00011211g0010.1 protein NbS00001008g0006.1 protein NbS00001008g0007.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00001008g0010.1 protein NbS00009821g0004.1 protein NbS00003765g0006.1 protein ; (*GB) gi|4097585|gb|AAD09518.1| (e_value=6e-23) NTGP4, partial [Nicotiana tabacum];; (*ITAG) Solyc11g028010.1.1 (e_value=1e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:16511645-16514975 transcript_region:SL2.40ch11:16511645..16514975+ go_terms:GO:0030246,GO:0005525 functional_description:"GTPase IMAP family member 7 (AHRD V1 *--- C3KGZ8_ANOFI); contains Interpro domain(s) IPR006703 AIG1 "; GO:0030246,GO:0005525 NbS00015307g0001.1 protein NbS00030236g0004.1 protein NbS00018388g0002.1 protein NbS00054905g0002.1 protein ; (*GB) gi|117553508|gb|ABK35283.1| (e_value=3e-35) deoxyxylulose-5-phosphate synthase [Adonis aestivalis var. palaestina];; (*SWP) sp|Q6YU51|DXS2_ORYSJ (e_value=1e-34) Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1;; (*TAIR) AT4G15560.1 (e_value=3e-33) | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717;; (*ITAG) Solyc11g010850.1.1 (e_value=7e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3870455-3875051 transcript_region:SL2.40ch11:3870455..3875051- go_terms:GO:0008661 functional_description:"1-deoxy-D-xylulose 5-phosphate synthase 2 (AHRD V1 **** C7U111_SOLLC); contains Interpro domain(s) IPR005477 Deoxyxylulose-5-phosphate synthase "; GO:0008661 NbS00040059g0002.1 protein NbS00018046g0002.1 protein NbS00018046g0003.1 protein NbS00018046g0004.1 protein ; (*GB) gi|225448677|ref|XP_002275084.1| (e_value=5e-15) PREDICTED: RING-H2 finger protein ATL72 [Vitis vinifera];; (*ITAG) Solyc06g049030.2.1 (e_value=6e-19) genomic_reference:SL2.40ch06 gene_region:28772345-28774182 transcript_region:SL2.40ch06:28772345..28774182- go_terms:GO:0008270 functional_description:"Ring finger protein (AHRD V1 ***- O49869_HORVU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00024033g0003.1 protein NbS00036387g0001.1 protein NbS00000761g0004.1 protein NbS00010703g0002.1 protein NbS00031165g0002.1 protein NbS00029363g0001.1 protein NbS00001989g0013.1 protein ; (*GB) gi|193245812|gb|ACF17125.1| (e_value=5e-30) CER6 [Solanum tuberosum];; (*SWP) sp|Q9XF43|KCS6_ARATH (e_value=5e-26) 3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=1 SV=1;; (*TAIR) AT1G68530.1 (e_value=4e-27) | Symbols: CUT1, POP1, CER6, G2, KCS6 | 3-ketoacyl-CoA synthase 6 | chr1:25712881-25714733 REVERSE LENGTH=497;; (*ITAG) Solyc02g085870.2.1 (e_value=1e-32) genomic_reference:SL2.40ch02 gene_region:43228977-43231217 transcript_region:SL2.40ch02:43228977..43231217+ go_terms:GO:0009922 functional_description:"Fatty acid elongase 3-ketoacyl-CoA synthase (AHRD V1 **** Q6DUV5_BRANA); contains Interpro domain(s) IPR012392 Very-long-chain 3-ketoacyl-CoA synthase "; GO:0009922 NbS00001989g0006.1 protein NbS00044232g0005.1 protein NbS00003273g0002.1 protein NbS00003273g0003.1 protein NbS00003731g0012.1 protein ; (*ITAG) Solyc01g050010.2.1 (e_value=8e-14) genomic_reference:SL2.40ch01 gene_region:42811141-42812144 transcript_region:SL2.40ch01:42811141..42812144+ go_terms:GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 *-*- Q2R194_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0046983 NbS00003731g0007.1 protein NbS00042378g0001.1 protein NbS00042378g0005.1 protein NbS00007109g0005.1 protein NbS00007109g0007.1 protein NbS00007109g0009.1 protein NbS00007109g0010.1 protein NbS00026116g0012.1 protein ; (*GB) gi|147856413|emb|CAN82500.1| (e_value=0.0) hypothetical protein VITISV_004914 [Vitis vinifera];; (*TAIR) AT4G01037.1 (e_value=0.0) | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-terminal hydrolase family protein | chr4:451444-453030 REVERSE LENGTH=528;; (*ITAG) Solyc01g079430.2.1 (e_value=2e-52) genomic_reference:SL2.40ch01 gene_region:71010601-71012028 transcript_region:SL2.40ch01:71010601..71012028- go_terms:GO:0005622 functional_description:"A_IG002N01.30 protein (Fragment) (AHRD V1 ***- O04624_ARATH); contains Interpro domain(s) IPR001578 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "; GO:0005622 NbS00026116g0008.1 protein NbS00026116g0010.1 protein NbS00003020g0011.1 protein ; (*ITAG) Solyc01g103690.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00027052g0003.1 protein NbS00027052g0004.1 protein NbS00051042g0003.1 protein NbS00038906g0006.1 protein NbS00002133g0007.1 protein NbS00033655g0002.1 protein NbS00006965g0002.1 protein ; (*ITAG) Solyc04g051170.1.1 (e_value=5e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:49010145-49011402 transcript_region:SL2.40ch04:49010145..49011402- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00013229g0002.1 protein NbS00010687g0005.1 protein NbS00011082g0007.1 protein NbS00035265g0003.1 protein NbS00004209g0006.1 protein NbS00044485g0003.1 protein ; (*GB) gi|255544712|ref|XP_002513417.1| (e_value=4e-114) GTP-binding protein, putative [Ricinus communis];; (*SWP) sp|P37518|ENGD_BACSU (e_value=1e-53) GTP-dependent nucleic acid-binding protein engD OS=Bacillus subtilis (strain 168) GN=engD PE=3 SV=1;; (*TAIR) AT1G56050.1 (e_value=1e-102) | Symbols: | GTP-binding protein-related | chr1:20963793-20966181 FORWARD LENGTH=421;; (*ITAG) Solyc07g066430.2.1 (e_value=3e-127) genomic_reference:SL2.40ch07 gene_region:65086442-65095484 transcript_region:SL2.40ch07:65086442..65095484+ go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** B0JHK9_MICAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00021760g0004.1 protein ; (*GB) gi|359475915|ref|XP_002277778.2| (e_value=9e-24) PREDICTED: histidine-containing phosphotransfer protein 4-like [Vitis vinifera];; (*SWP) sp|Q9LU15|AHP4_ARATH (e_value=1e-17) Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2;; (*TAIR) AT3G16360.2 (e_value=1e-20) | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145;; (*ITAG) Solyc11g070150.1.1 (e_value=4e-33) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51751629-51754234 transcript_region:SL2.40ch11:51751629..51754234- go_terms:GO:0000160 functional_description:"Histidine phosphotransfer protein (AHRD V1 ***- B9GGM6_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0000160 NbS00058462g0003.1 protein NbS00014805g0003.1 protein ; (*GB) gi|224141469|ref|XP_002324094.1| (e_value=4e-43) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q8GWT1|GAUTE_ARATH (e_value=5e-42) Probable galacturonosyltransferase 14 OS=Arabidopsis thaliana GN=GAUT14 PE=2 SV=1;; (*TAIR) AT5G15470.1 (e_value=4e-43) | Symbols: GAUT14 | galacturonosyltransferase 14 | chr5:5021433-5024168 REVERSE LENGTH=532;; (*ITAG) Solyc03g013630.2.1 (e_value=2e-45) genomic_reference:SL2.40ch03 gene_region:6576713-6582582 transcript_region:SL2.40ch03:6576713..6582582+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 ***- B9IK47_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00014805g0103.1 protein NbS00014805g0104.1 protein NbS00033441g0003.1 protein NbS00047007g0004.1 protein NbS00047007g0005.1 protein NbS00047007g0006.1 protein NbS00007132g0011.1 protein NbS00007132g0013.1 protein NbS00028455g0007.1 protein ; (*GB) gi|217075186|gb|ACJ85953.1| (e_value=8e-23) unknown [Medicago truncatula];; (*SWP) sp|P83877|TXN4A_MOUSE (e_value=2e-19) Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1;; (*TAIR) AT5G08290.1 (e_value=1e-24) | Symbols: YLS8 | mRNA splicing factor, thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD LENGTH=142;; (*ITAG) Solyc02g014870.2.1 (e_value=2e-25) genomic_reference:SL2.40ch02 gene_region:10424377-10430192 transcript_region:SL2.40ch02:10424377..10430192- go_terms:GO:0005515 functional_description:"Mitosis protein dim1 (AHRD V1 **-- B6T4C6_MAIZE); contains Interpro domain(s) IPR004123 mRNA splicing factor, thioredoxin-like U5 snRNP "; GO:0005515 NbS00001886g0005.1 protein NbS00044705g0001.1 protein NbS00007787g0003.1 protein ; (*TAIR) AT4G16845.2 (e_value=1e-14) | Symbols: VRN2 | VEFS-Box of polycomb protein | chr4:9477246-9479725 FORWARD LENGTH=380;; (*ITAG) Solyc03g093640.2.1 (e_value=4e-15) genomic_reference:SL2.40ch03 gene_region:48624958-48655114 transcript_region:SL2.40ch03:48624958..48655114- go_terms:GO:0005515,GO:0003700 functional_description:"Polycomb group protein EMBRYONIC FLOWER 2 (AHRD V1 **-- EMF2_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbS00007787g0006.1 protein NbS00007787g0104.1 protein NbS00019530g0011.1 protein NbS00019530g0012.1 protein NbS00019530g0007.1 protein NbS00043827g0009.1 protein NbS00027243g0005.1 protein NbS00010301g0111.1 protein NbS00010301g0110.1 protein NbS00012569g0007.1 protein NbS00012569g0008.1 protein NbS00012569g0010.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00035347g0003.1 protein NbS00035347g0004.1 protein NbS00018432g0005.1 protein ; (*GB) gi|224132120|ref|XP_002328190.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|B7ZWR6|OEP61_ARATH (e_value=3e-16) Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1;; (*TAIR) AT5G21990.1 (e_value=2e-17) | Symbols: TPR7 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:7273395-7276318 FORWARD LENGTH=554;; (*ITAG) Solyc06g073840.2.1 (e_value=8e-20) genomic_reference:SL2.40ch06 gene_region:41984106-41992683 transcript_region:SL2.40ch06:41984106..41992683+ go_terms:GO:0005488,GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase D (AHRD V1 *--- PPID_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488,GO:0006457 NbS00018432g0009.1 protein ; (*GB) gi|57013978|ref|YP_173450.1| (e_value=2e-16) hypothetical protein NitaMp112 [Nicotiana tabacum]; NbS00004709g0012.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00004709g0004.1 protein ; (*ITAG) Solyc01g058550.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:59846604-59846909 transcript_region:SL2.40ch01:59846604..59846909- functional_description:"Unknown Protein (AHRD V1)"; NbS00004709g0005.1 protein NbS00034811g0006.1 protein NbS00034811g0008.1 protein NbS00018358g0011.1 protein NbS00018358g0103.1 protein NbS00044692g0001.1 protein ; (*ITAG) Solyc06g050370.1.1 (e_value=5e-15) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch06 gene_region:29483311-29483865 transcript_region:SL2.40ch06:29483311..29483865+ functional_description:"Unknown Protein (AHRD V1)"; NbC26218984g0001.1 protein NbS00032281g0005.1 protein ; (*ITAG) Solyc11g008710.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2887741-2892339 transcript_region:SL2.40ch11:2887741..2892339+ go_terms:GO:0005840,GO:0005622 functional_description:"30S ribosomal protein S5 (AHRD V1 *-*- C7R892_KANKD); contains Interpro domain(s) IPR000851 Ribosomal protein S5 "; GO:0005840,GO:0005622 NbS00005715g0004.1 protein ; (*GB) gi|10047455|gb|AAG12251.1|AF205130_1 (e_value=2e-69) guanylate kinase [Nicotiana tabacum];; (*SWP) sp|Q54XF2|KGUA_DICDI (e_value=4e-29) Guanylate kinase OS=Dictyostelium discoideum GN=guk1 PE=3 SV=1;; (*TAIR) AT3G57550.2 (e_value=7e-56) | Symbols: AGK2, GK-2 | guanylate kinase | chr3:21307269-21309193 FORWARD LENGTH=390;; (*ITAG) Solyc10g079140.1.1 (e_value=2e-65) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60076614-60079724 transcript_region:SL2.40ch10:60076614..60079724+ go_terms:GO:0006163 functional_description:"Guanylate kinase (AHRD V1 ***- Q9FVC6_TOBAC); contains Interpro domain(s) IPR017665 Guanylate kinase, sub-group "; GO:0006163 NbS00009026g0105.1 protein NbS00004237g0003.1 protein NbS00049658g0008.1 protein NbS00049155g0002.1 protein NbS00021970g0008.1 protein NbS00004638g0007.1 protein NbS00022327g0003.1 protein NbC26316418g0006.1 protein NbS00007213g0007.1 protein NbS00020138g0002.1 protein NbS00030969g0001.1 protein NbS00015404g0003.1 protein NbS00015404g0004.1 protein NbC24645075g0001.1 protein ; (*GB) gi|1711509|sp|P49971.1|SR541_SOLLC (e_value=2e-36) RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54;; (*SWP) sp|P49971|SR541_SOLLC (e_value=5e-38) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT1G48900.2 (e_value=1e-37) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc03g116810.2.1 (e_value=4e-39) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00046617g0001.1 protein NbC24280623g0001.1 protein ; (*GB) gi|255548574|ref|XP_002515343.1| (e_value=2e-38) Coatomer subunit beta, putative [Ricinus communis];; (*SWP) sp|Q9SV21|COPB1_ARATH (e_value=2e-33) Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2;; (*TAIR) AT4G31480.2 (e_value=2e-34) | Symbols: | Coatomer, beta subunit | chr4:15264145-15267384 FORWARD LENGTH=948;; (*ITAG) Solyc01g007150.2.1 (e_value=3e-46) genomic_reference:SL2.40ch01 gene_region:1711995-1718473 transcript_region:SL2.40ch01:1711995..1718473- go_terms:GO:0005515 functional_description:"Coatomer subunit beta-1 (AHRD V1 ***- D7MB61_ARALY); contains Interpro domain(s) IPR016460 Coatomer, beta subunit "; GO:0005515 NbS00007699g0008.1 protein NbS00061363g0002.1 protein NbS00013914g0002.1 protein NbS00013914g0003.1 protein ; (*GB) gi|113461|sp|P27081.1|ADT2_SOLTU (e_value=9e-30) RecName: Full=ADP,ATP carrier protein, mitochondrial; AltName: Full=ADP/ATP translocase; AltName: Full=Adenine nucleotide translocator; Short=ANT; Flags: Precursor;; (*SWP) sp|P27081|ADT2_SOLTU (e_value=3e-31) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*ITAG) Solyc11g062130.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00003441g0006.1 protein ; (*GB) gi|356544046|ref|XP_003540466.1| (e_value=2e-21) PREDICTED: 50S ribosomal protein L3-2, chloroplastic-like [Glycine max];; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=4e-22) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=3e-23) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=3e-29) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbC24254036g0001.1 protein ; (*GB) gi|224138422|ref|XP_002322810.1| (e_value=5e-31) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8S9M4|PP198_ARATH (e_value=3e-31) Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2;; (*TAIR) AT2G41080.1 (e_value=2e-32) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:17132857-17134554 FORWARD LENGTH=565;; (*ITAG) Solyc07g055310.1.1 (e_value=6e-49) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60714945-60716921 transcript_region:SL2.40ch07:60714945..60716921- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LGJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00026766g0003.1 protein NbS00010707g0011.1 protein NbS00001569g0004.1 protein NbS00001569g0005.1 protein NbS00008229g0008.1 protein NbS00049489g0002.1 protein ; (*GB) gi|224139146|ref|XP_002326779.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G31460.1 (e_value=1e-20) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink). | chr1:11261705-11262610 REVERSE LENGTH=301; NbS00003555g0003.1 protein NbS00014462g0007.1 protein NbS00014462g0008.1 protein NbS00003110g0005.1 protein NbC25394629g0001.1 protein ; (*GB) gi|225439410|ref|XP_002264265.1| (e_value=1e-53) PREDICTED: selT-like protein [Vitis vinifera];; (*SWP) sp|Q9STZ2|SELT_ARATH (e_value=2e-48) SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2;; (*TAIR) AT3G47300.1 (e_value=2e-49) | Symbols: SELT | SELT-like protein precursor | chr3:17428685-17429555 REVERSE LENGTH=209;; (*ITAG) Solyc09g005590.2.1 (e_value=2e-15) genomic_reference:SL2.40ch09 gene_region:404657-406063 transcript_region:SL2.40ch09:404657..406063+ go_terms:GO:0045454 functional_description:"SelT-like protein (AHRD V1 ***- SELT_ARATH); contains Interpro domain(s) IPR019389 Selenoprotein T "; GO:0045454 NbS00018316g0002.1 protein ; (*GB) gi|357444091|ref|XP_003592323.1| (e_value=2e-15) Valyl-tRNA synthetase [Medicago truncatula];; (*TAIR) AT1G14610.1 (e_value=2e-16) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00024004g0003.1 protein ; (*GB) gi|62286954|sp|Q9XG98.1|KPRS1_SPIOL (e_value=3e-19) RecName: Full=Ribose-phosphate pyrophosphokinase 1; AltName: Full=Phosphoribosyl pyrophosphate synthase 1;; (*SWP) sp|Q9XG98|KPRS1_SPIOL (e_value=8e-21) Ribose-phosphate pyrophosphokinase 1 OS=Spinacia oleracea GN=PRS1 PE=2 SV=1;; (*TAIR) AT2G44530.1 (e_value=2e-20) | Symbols: | Phosphoribosyltransferase family protein | chr2:18383732-18385974 FORWARD LENGTH=394;; (*ITAG) Solyc08g077200.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:58267856-58273524 transcript_region:SL2.40ch08:58267856..58273524+ go_terms:GO:0042803 functional_description:"Ribose-phosphate pyrophosphokinase (AHRD V1 ***- D7KHJ9_ARALY); contains Interpro domain(s) IPR005946 Phosphoribosyl pyrophosphokinase "; GO:0042803 NbS00004715g0002.1 protein NbS00039795g0001.1 protein NbS00039795g0002.1 protein NbS00009994g0005.1 protein ; (*GB) gi|255586919|ref|XP_002534061.1| (e_value=2e-112) Eukaryotic initiation factor iso-4F subunit p82-34, putative [Ricinus communis];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=1e-72) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT5G57870.1 (e_value=9e-88) | Symbols: eIFiso4G1 | MIF4G domain-containing protein / MA3 domain-containing protein | chr5:23439755-23443433 FORWARD LENGTH=780;; (*ITAG) Solyc07g005810.2.1 (e_value=1e-156) genomic_reference:SL2.40ch07 gene_region:648580-654196 transcript_region:SL2.40ch07:648580..654196- go_terms:GO:0003723 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0003723 NbS00009994g0006.1 protein ; (*GB) gi|224091819|ref|XP_002309358.1| (e_value=2e-59) predicted protein [Populus trichocarpa];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=5e-49) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT2G24050.1 (e_value=6e-53) | Symbols: eIFiso4G2 | MIF4G domain-containing protein / MA3 domain-containing protein | chr2:10225500-10228456 REVERSE LENGTH=747;; (*ITAG) Solyc07g005810.2.1 (e_value=3e-62) genomic_reference:SL2.40ch07 gene_region:648580-654196 transcript_region:SL2.40ch07:648580..654196- go_terms:GO:0003723 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0003723 NbS00032096g0001.1 protein ; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=1e-15) PREDICTED: transportin-3-like [Vitis vinifera];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=7e-14) DNA polymerase OS=Zea mays PE=3 SV=1;; (*TAIR) AT1G12930.1 (e_value=8e-14) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005; NbS00012488g0005.1 protein NbS00038971g0002.1 protein NbS00026313g0003.1 protein NbS00026313g0007.1 protein ; (*ITAG) Solyc01g094290.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00026222g0004.1 protein NbS00009693g0011.1 protein NbS00009693g0012.1 protein ; (*GB) gi|332322109|emb|CCA66008.1| (e_value=3e-32) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=1e-31) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbS00009693g0016.1 protein NbS00009693g0017.1 protein NbS00024395g0002.1 protein NbS00025437g0005.1 protein NbS00003658g0006.1 protein ; (*GB) gi|147853458|emb|CAN80201.1| (e_value=5e-16) hypothetical protein VITISV_038543 [Vitis vinifera]; NbS00003658g0008.1 protein NbS00045592g0014.1 protein NbS00045592g0015.1 protein NbS00035115g0001.1 protein NbS00049002g0005.1 protein NbS00035236g0003.1 protein ; (*GB) gi|2499498|sp|Q42962.1|PGKY_TOBAC (e_value=6e-23) RecName: Full=Phosphoglycerate kinase, cytosolic;; (*SWP) sp|Q42962|PGKY_TOBAC (e_value=2e-24) Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT1G79550.2 (e_value=3e-21) | Symbols: PGK | phosphoglycerate kinase | chr1:29924347-29926295 REVERSE LENGTH=401;; (*ITAG) Solyc07g066600.2.1 (e_value=8e-25) genomic_reference:SL2.40ch07 gene_region:65205704-65208684 transcript_region:SL2.40ch07:65205704..65208684- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- Q2VCK2_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00010744g0003.1 protein NbS00010744g0004.1 protein NbS00010744g0006.1 protein NbS00023080g0008.1 protein NbS00023080g0209.1 protein NbS00002628g0005.1 protein NbS00036691g0001.1 protein NbS00045608g0004.1 protein NbS00028852g0003.1 protein NbS00022019g0004.1 protein NbS00021283g0002.1 protein ; (*ITAG) Solyc04g016370.2.1 (e_value=7e-19) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00021283g0003.1 protein ; (*GB) gi|225441914|ref|XP_002278785.1| (e_value=1e-18) PREDICTED: DNA helicase INO80-like [Vitis vinifera];; (*SWP) sp|Q8RXS6|INO80_ARATH (e_value=8e-16) DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2;; (*TAIR) AT3G57300.1 (e_value=6e-17) | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21199612-21207635 FORWARD LENGTH=1507;; (*ITAG) Solyc04g016370.2.1 (e_value=1e-29) genomic_reference:SL2.40ch04 gene_region:7168394-7184544 transcript_region:SL2.40ch04:7168394..7184544- go_terms:GO:0043140 functional_description:"DNA ATP-dependent helicase (AHRD V1 **-* C0NQX1_AJECG); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0043140 NbS00011070g0005.1 protein NbS00027783g0003.1 protein NbS00031849g0001.1 protein NbS00003884g0006.1 protein NbS00003884g0010.1 protein NbS00001417g0104.1 protein NbS00038541g0003.1 protein NbS00015088g0008.1 protein NbS00015088g0009.1 protein NbS00023314g0005.1 protein NbS00007314g0010.1 protein NbS00004658g0005.1 protein NbS00016031g0005.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=1e-40) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=2e-36) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=2e-37) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc02g071180.2.1 (e_value=1e-68) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00013813g0001.1 protein NbS00022894g0003.1 protein NbS00022894g0004.1 protein NbS00043829g0001.1 protein ; (*GB) gi|374095381|sp|Q3E6S8.2|DGP14_ARATH (e_value=3e-17) RecName: Full=Putative protease Do-like 14;; (*SWP) sp|Q3E6S8|DGP14_ARATH (e_value=8e-19) Putative protease Do-like 14 OS=Arabidopsis thaliana GN=DEGP14 PE=3 SV=2;; (*TAIR) AT5G27660.1 (e_value=8e-20) | Symbols: | Trypsin family protein with PDZ domain | chr5:9789835-9792235 REVERSE LENGTH=428; NbS00043829g0002.1 protein ; (*GB) gi|147820971|emb|CAN74596.1| (e_value=8e-14) hypothetical protein VITISV_003478 [Vitis vinifera];; (*TAIR) AT5G12410.1 (e_value=1e-14) | Symbols: | THUMP domain-containing protein | chr5:4021974-4023950 REVERSE LENGTH=376;; (*ITAG) Solyc11g065180.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47592132-47599568 transcript_region:SL2.40ch11:47592132..47599568+ functional_description:"THUMP domain-containing protein (AHRD V1 ***- D7M518_ARALY); contains Interpro domain(s) IPR004114 THUMP "; NbS00024425g0001.1 protein ; (*ITAG) Solyc02g084690.2.1 (e_value=9e-14) genomic_reference:SL2.40ch02 gene_region:42366670-42374867 transcript_region:SL2.40ch02:42366670..42374867- functional_description:"FG-GAP repeat-containing protein (AHRD V1 ***- D7LTM4_ARALY); contains Interpro domain(s) IPR013517 FG-GAP "; NbS00024425g0102.1 protein NbS00010278g0004.1 protein NbS00010278g0005.1 protein NbS00059640g0002.1 protein ; (*GB) gi|224089086|ref|XP_002308631.1| (e_value=4e-16) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SL95|MOT1_ARATH (e_value=1e-15) Molybdate transporter 1 OS=Arabidopsis thaliana GN=MOT1 PE=1 SV=1;; (*TAIR) AT2G25680.1 (e_value=1e-16) | Symbols: MOT1 | molybdate transporter 1 | chr2:10933167-10934537 REVERSE LENGTH=456;; (*ITAG) Solyc10g084680.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:63445310-63446671 transcript_region:SL2.40ch10:63445310..63446671+ go_terms:GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- D7LBF8_ARALY); contains Interpro domain(s) IPR011547 Sulphate transporter "; GO:0016021 NbS00004648g0010.1 protein NbS00005731g0001.1 protein NbS00019527g0005.1 protein NbS00029763g0002.1 protein NbS00032318g0003.1 protein NbS00039656g0004.1 protein NbS00010059g0003.1 protein NbS00010059g0006.1 protein NbS00007010g0005.1 protein NbS00001084g0001.1 protein NbS00001084g0002.1 protein ; (*GB) gi|255551167|ref|XP_002516631.1| (e_value=3e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G04830.2 (e_value=9e-33) | Symbols: | Nuclear transport factor 2 (NTF2) family protein | chr5:1402294-1403671 REVERSE LENGTH=178;; (*ITAG) Solyc11g006510.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1177337-1180831 transcript_region:SL2.40ch11:1177337..1180831- functional_description:"Genomic DNA chromosome 5 P1 clone MUK11 (AHRD V1 ***- Q9FMC7_ARATH)"; NbS00016409g0008.1 protein NbS00016409g0103.1 protein NbS00027050g0012.1 protein ; (*GB) gi|255586949|ref|XP_002534074.1| (e_value=9e-17) Peptide transporter, putative [Ricinus communis];; (*TAIR) AT2G37900.1 (e_value=8e-14) | Symbols: | Major facilitator superfamily protein | chr2:15864396-15866408 REVERSE LENGTH=575;; (*ITAG) Solyc10g084950.1.1 (e_value=2e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63622589-63626420 transcript_region:SL2.40ch10:63622589..63626420- go_terms:GO:0016020 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_XENLA); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0016020 NbS00044182g0004.1 protein NbS00016971g0007.1 protein ; (*ITAG) Solyc06g075240.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:43073654-43078573 transcript_region:SL2.40ch06:43073654..43078573- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC24328462g0001.1 protein ; (*GB) gi|357453443|ref|XP_003596998.1| (e_value=2e-28) Homeobox-leucine zipper protein ROC7 [Medicago truncatula];; (*SWP) sp|Q93V99|PDF2_ARATH (e_value=1e-27) Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1;; (*TAIR) AT4G04890.1 (e_value=9e-29) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc12g005830.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:468371-472633 transcript_region:SL2.40ch12:468371..472633+ go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 ***- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0005634,GO:0006355,GO:0045449 NbS00036418g0003.1 protein NbS00036418g0004.1 protein NbS00011126g0006.1 protein NbS00009383g0005.1 protein ; (*GB) gi|359487776|ref|XP_002284915.2| (e_value=3e-58) PREDICTED: branched-chain-amino-acid aminotransferase-like protein 2 [Vitis vinifera];; (*SWP) sp|Q9ASR4|BCAL2_ARATH (e_value=7e-55) Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1;; (*TAIR) AT5G27410.1 (e_value=6e-56) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:9678821-9682468 FORWARD LENGTH=559;; (*ITAG) Solyc01g098700.2.1 (e_value=4e-75) genomic_reference:SL2.40ch01 gene_region:80878024-80889329 transcript_region:SL2.40ch01:80878024..80889329+ go_terms:GO:0008152 functional_description:"Branched-chain amino acid aminotransferase-like protein (AHRD V1 ***- Q84L60_CICAR); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00017174g0011.1 protein NbS00017174g0009.1 protein ; (*GB) gi|238479693|ref|NP_001154597.1| (e_value=1e-19) armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana];; (*TAIR) AT3G08943.1 (e_value=3e-22) | Symbols: | ARM repeat superfamily protein | chr3:2719198-2721911 REVERSE LENGTH=871;; (*ITAG) Solyc09g005010.2.1 (e_value=8e-28) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00000668g0004.1 protein NbS00000668g0005.1 protein NbS00044381g0001.1 protein NbS00015154g0004.1 protein NbS00015154g0005.1 protein NbS00015154g0007.1 protein NbS00009092g0002.1 protein ; (*GB) gi|225465249|ref|XP_002268014.1| (e_value=8e-31) PREDICTED: uncharacterized protein LOC100250508 [Vitis vinifera];; (*TAIR) AT1G10280.1 (e_value=4e-32) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:3366795-3368739 REVERSE LENGTH=412;; (*ITAG) Solyc01g103150.2.1 (e_value=2e-44) genomic_reference:SL2.40ch01 gene_region:83577505-83582190 transcript_region:SL2.40ch01:83577505..83582190+ functional_description:"Os03g0731050 protein (Fragment) (AHRD V1 ***- C7IZG5_ORYSJ); contains Interpro domain(s) IPR004949 Protein of unknown function DUF266, plant "; NbS00004267g0009.1 protein NbS00056060g0002.1 protein NbS00042036g0005.1 protein NbS00017729g0003.1 protein NbS00028724g0006.1 protein NbS00028724g0007.1 protein NbS00016660g0001.1 protein NbS00016660g0004.1 protein NbS00009630g0003.1 protein NbS00019237g0005.1 protein NbS00028714g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00003681g0005.1 protein NbS00003681g0006.1 protein NbS00009938g0008.1 protein ; (*GB) gi|357435983|ref|XP_003588267.1| (e_value=5e-25) hypothetical protein MTR_1g005080 [Medicago truncatula]; NbS00032652g0008.1 protein NbS00007149g0003.1 protein NbS00014499g0001.1 protein NbS00004918g0005.1 protein NbS00030982g0003.1 protein NbS00056391g0002.1 protein ; (*ITAG) Solyc09g089860.2.1 (e_value=9e-17) genomic_reference:SL2.40ch09 gene_region:64836506-64838374 transcript_region:SL2.40ch09:64836506..64838374+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- B6TRP3_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00037454g0004.1 protein NbS00010089g0007.1 protein NbS00010089g0009.1 protein NbC23726790g0001.1 protein ; (*GB) gi|113205383|gb|AAU93590.2| (e_value=5e-23) Late blight resistance protein, putative [Solanum demissum];; (*SWP) sp|Q6L438|R1A6_SOLDE (e_value=2e-18) Putative late blight resistance protein homolog R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2;; (*TAIR) AT3G46730.1 (e_value=2e-15) | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:17213069-17215612 REVERSE LENGTH=847;; (*ITAG) Solyc05g005330.2.1 (e_value=7e-30) genomic_reference:SL2.40ch05 gene_region:262592-266801 transcript_region:SL2.40ch05:262592..266801+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein with an R1 specific domain"; GO:0006952,GO:0006915 NbS00048837g0004.1 protein ; (*GB) gi|388510824|gb|AFK43478.1| (e_value=2e-22) unknown [Lotus japonicus]; NbS00014178g0003.1 protein NbS00022659g0114.1 protein NbS00022659g0117.1 protein NbS00018843g0005.1 protein NbC26108385g0002.1 protein NbS00012635g0001.1 protein NbS00012635g0101.1 protein NbS00057188g0003.1 protein ; (*GB) gi|359491112|ref|XP_003634223.1| (e_value=8e-32) PREDICTED: RNA pseudourine synthase 7-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q0E0Y3|PUS7_ORYSJ (e_value=8e-30) RNA pseudourine synthase 7 OS=Oryza sativa subsp. japonica GN=Os02g0512300 PE=2 SV=2;; (*TAIR) AT5G51140.1 (e_value=2e-19) | Symbols: | Pseudouridine synthase family protein | chr5:20784277-20786793 REVERSE LENGTH=395;; (*ITAG) Solyc03g097550.2.1 (e_value=3e-38) genomic_reference:SL2.40ch03 gene_region:53324402-53332524 transcript_region:SL2.40ch03:53324402..53332524+ go_terms:GO:0009451,GO:0003723 functional_description:"Pseudouridine synthase family protein (AHRD V1 ***- D7MQX8_ARALY); contains Interpro domain(s) IPR006225 Pseudouridine synthase, RluC/RluD "; GO:0009451,GO:0003723 NbS00013756g0103.1 protein NbS00005947g0005.1 protein ; (*GB) gi|297737473|emb|CBI26674.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5R6Z6|RCD1_PONAB (e_value=9e-21) Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1 PE=2 SV=2;; (*TAIR) AT3G20800.1 (e_value=1e-28) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc12g014400.1.1 (e_value=9e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5301680-5310483 transcript_region:SL2.40ch12:5301680..5310483+ functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- B6TRX0_MAIZE); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; NbS00005947g0006.1 protein NbS00005947g0008.1 protein NbS00013376g0006.1 protein NbS00023291g0007.1 protein NbS00023291g0008.1 protein ; (*GB) gi|255548710|ref|XP_002515411.1| (e_value=3e-13) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G30140.1 (e_value=3e-14) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:10598764-10599527 FORWARD LENGTH=222; NbS00001011g0001.1 protein NbS00003835g0003.1 protein NbS00000194g0006.1 protein NbS00005419g0005.1 protein NbS00005419g0006.1 protein NbS00024448g0003.1 protein NbS00024448g0004.1 protein NbS00024448g0005.1 protein NbS00024448g0008.1 protein NbS00048476g0004.1 protein NbS00005485g0001.1 protein NbS00023300g0001.1 protein NbS00023300g0002.1 protein NbS00022038g0002.1 protein NbS00023794g0004.1 protein NbS00041855g0003.1 protein ; (*GB) gi|359477663|ref|XP_003632008.1| (e_value=6e-15) PREDICTED: probable methyltransferase PMT8 [Vitis vinifera];; (*ITAG) Solyc09g090160.2.1 (e_value=2e-14) genomic_reference:SL2.40ch09 gene_region:65046640-65052937 transcript_region:SL2.40ch09:65046640..65052937+ go_terms:GO:0008270 functional_description:"Ankyrin repeat domain-containing protein 2 (AHRD V1 *--- B6U990_MAIZE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008270 NbS00041855g0008.1 protein NbS00008633g0004.1 protein NbS00008633g0008.1 protein NbS00016877g0005.1 protein NbS00000150g0006.1 protein NbS00001789g0003.1 protein NbS00001789g0004.1 protein NbS00012467g0004.1 protein NbS00012467g0104.1 protein NbS00012467g0105.1 protein NbS00012467g0204.1 protein NbS00012467g0205.1 protein NbS00012467g0207.1 protein NbS00012467g0209.1 protein NbS00012467g0210.1 protein NbS00005428g0011.1 protein NbS00028571g0001.1 protein NbS00014413g0002.1 protein NbS00014091g0014.1 protein ; (*GB) gi|12322951|gb|AAG51467.1|AC069160_13 (e_value=1e-17) hypothetical protein, 5' partial [Arabidopsis thaliana]; NbS00014091g0007.1 protein ; (*ITAG) Solyc12g010650.1.1 (e_value=4e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3593795-3596323 transcript_region:SL2.40ch12:3593795..3596323+ functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 **-- D7M0N3_ARALY); contains Interpro domain(s) IPR019333 Integrator complex, subunit 3 "; NbS00028117g0002.1 protein ; (*GB) gi|9627960|ref|NP_042514.1| (e_value=9e-31) hypothetical protein [Peanut chlorotic streak virus]; NbS00043318g0001.1 protein NbS00029320g0005.1 protein NbS00020604g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-23) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00023518g0002.1 protein NbS00014558g0002.1 protein NbS00030722g0001.1 protein NbS00049103g0003.1 protein NbS00003427g0114.1 protein NbS00003427g0115.1 protein NbS00003427g0109.1 protein NbS00003427g0219.1 protein NbS00006772g0002.1 protein ; (*GB) gi|386799292|ref|YP_006291838.1| (e_value=1e-21) orf49 gene product (mitochondrion) [Daucus carota subsp. sativus]; NbS00045370g0002.1 protein NbS00012321g0001.1 protein NbS00004621g0002.1 protein NbS00018197g0009.1 protein ; (*TAIR) AT1G30410.1 (e_value=5e-12) | Symbols: ATMRP13, MRP13, ABCC12 | multidrug resistance-associated protein 13 | chr1:10739357-10747017 FORWARD LENGTH=1468;; (*ITAG) Solyc12g036140.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:29643360-29649622 transcript_region:SL2.40ch12:29643360..29649622+ go_terms:GO:0017111,GO:0016887,GO:0016021 functional_description:"Multidrug resistance protein ABC transporter family (AHRD V1 **-- B9I191_POPTR); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887,GO:0016021 NbS00017258g0002.1 protein NbS00004311g0013.1 protein NbS00004311g0006.1 protein NbS00004311g0009.1 protein NbS00002760g0004.1 protein NbS00028586g0006.1 protein NbS00028586g0009.1 protein ; (*GB) gi|255586967|ref|XP_002534081.1| (e_value=2e-30) DNA repair protein RAD50, putative [Ricinus communis];; (*TAIR) AT1G22060.1 (e_value=4e-18) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999;; (*ITAG) Solyc11g007900.1.1 (e_value=8e-52) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2123346-2132562 transcript_region:SL2.40ch11:2123346..2132562+ functional_description:"Os03g0107400 protein (Fragment) (AHRD V1 *--- Q0DVY2_ORYSJ); contains Interpro domain(s) IPR009053 Prefoldin "; NbS00014717g0013.1 protein NbS00009667g0004.1 protein NbS00030756g0005.1 protein NbS00014299g0008.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=1e-32) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00033596g0005.1 protein NbS00001302g0007.1 protein NbS00033037g0004.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=1e-23) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00033908g0003.1 protein NbS00033908g0006.1 protein NbS00010217g0004.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00004182g0104.1 protein NbS00004182g0105.1 protein NbS00004182g0202.1 protein NbC26241325g0002.1 protein ; (*GB) gi|255587675|ref|XP_002534352.1| (e_value=9e-37) GTP cyclohydrolase II, putative [Ricinus communis];; (*SWP) sp|P47924|RIBBA_ARATH (e_value=1e-26) Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2;; (*TAIR) AT5G59750.2 (e_value=3e-32) | Symbols: | DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II | chr5:24073397-24075411 FORWARD LENGTH=543;; (*ITAG) Solyc11g073160.1.1 (e_value=2e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53309247-53311991 transcript_region:SL2.40ch11:53309247..53311991+ go_terms:GO:0009231 functional_description:"GTP cyclohydrolase II/3 4-dihydroxy-2-butanone 4-phosphate synthase (AHRD V1 **-- Q6A4W9_MALDO); contains Interpro domain(s) IPR016299 Riboflavin biosynthesis protein RibA "; GO:0009231 NbS00008028g0010.1 protein NbS00003084g0001.1 protein NbS00010376g0001.1 protein NbS00028161g0007.1 protein NbS00028161g0008.1 protein NbS00040496g0002.1 protein ; (*ITAG) Solyc08g062670.2.1 (e_value=1e-16) genomic_reference:SL2.40ch08 gene_region:48906817-48928435 transcript_region:SL2.40ch08:48906817..48928435- go_terms:GO:0006468 functional_description:"Serine/threonine-protein kinase 38 (AHRD V1 ***- B6U4A0_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC26082210g0001.1 protein ; (*GB) gi|224065855|ref|XP_002301974.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g081510.2.1 (e_value=1e-43) genomic_reference:SL2.40ch04 gene_region:63055757-63062387 transcript_region:SL2.40ch04:63055757..63062387+ go_terms:GO:0016020 functional_description:"Os01g0873900 protein (Fragment) (AHRD V1 *-*- Q0JHA9_ORYSJ); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; GO:0016020 NbS00005217g0002.1 protein NbS00046335g0005.1 protein ; (*GB) gi|42565416|gb|AAS20981.1| (e_value=6e-17) ribosomal protein L3 [Hyacinthus orientalis];; (*SWP) sp|P35684|RL3_ORYSJ (e_value=1e-17) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2;; (*TAIR) AT1G43170.4 (e_value=5e-19) | Symbols: ARP1, RPL3A, RP1 | ribosomal protein 1 | chr1:16267519-16268631 FORWARD LENGTH=306;; (*ITAG) Solyc01g103510.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:83859723-83864398 transcript_region:SL2.40ch01:83859723..83864398- go_terms:GO:0003735,GO:0005515 functional_description:"Ribosomal protein L3-like (AHRD V1 ***- Q2VCJ2_SOLTU); contains Interpro domain(s) IPR000597 Ribosomal protein L3 "; GO:0003735,GO:0005515 NbS00019428g0008.1 protein NbS00005570g0007.1 protein NbS00016453g0002.1 protein NbS00033275g0001.1 protein NbS00016326g0002.1 protein NbS00059440g0001.1 protein NbS00003163g0010.1 protein NbC25723900g0002.1 protein NbS00000435g0004.1 protein NbS00027799g0001.1 protein NbS00006892g0002.1 protein NbS00002841g0007.1 protein NbS00029764g0007.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-15) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00045705g0002.1 protein NbS00022366g0003.1 protein NbS00004257g0001.1 protein ; (*GB) gi|321266521|gb|ADW78597.1| (e_value=8e-34) protein disulfide isomerase-like protein [Hibiscus cannabinus];; (*SWP) sp|Q94F09|PDI52_ARATH (e_value=1e-31) Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=2 SV=1;; (*TAIR) AT1G35620.1 (e_value=1e-32) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440;; (*ITAG) Solyc11g019920.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:9781305-9788278 transcript_region:SL2.40ch11:9781305..9788278+ go_terms:GO:0045454 functional_description:"Protein disulfide isomerase (AHRD V1 ***- Q5EUD3_MAIZE); contains Interpro domain(s) IPR013766 Thioredoxin domain "; GO:0045454 NbS00003178g0002.1 protein NbS00024590g0005.1 protein NbS00007238g0002.1 protein NbS00032191g0004.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-13) RNase H family protein [Solanum demissum]; NbS00008855g0005.1 protein NbS00008855g0006.1 protein NbS00014745g0006.1 protein ; (*GB) gi|255563046|ref|XP_002522527.1| (e_value=1e-34) ATP-dependent RNA helicase, putative [Ricinus communis];; (*SWP) sp|Q54F05|DHX8_DICDI (e_value=3e-17) ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1;; (*TAIR) AT4G18465.1 (e_value=1e-30) | Symbols: | RNA helicase family protein | chr4:10197056-10201611 FORWARD LENGTH=695;; (*ITAG) Solyc09g097820.2.1 (e_value=6e-41) genomic_reference:SL2.40ch09 gene_region:67082028-67094293 transcript_region:SL2.40ch09:67082028..67094293- go_terms:GO:0004004 functional_description:"ATP dependent RNA helicase (AHRD V1 **** C5JMZ5_AJEDS); contains Interpro domain(s) IPR011709 Region of unknown function DUF1605 "; GO:0004004 NbS00022788g0005.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=2e-15) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*TAIR) AT1G24430.1 (e_value=1e-12) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc01g105550.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85449541-85450899 transcript_region:SL2.40ch01:85449541..85450899+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK69_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00029674g0002.1 protein NbS00045093g0001.1 protein NbS00058165g0002.1 protein NbS00005684g0002.1 protein NbS00006966g0004.1 protein NbS00006966g0009.1 protein ; (*GB) gi|224140799|ref|XP_002323766.1| (e_value=1e-72) predicted protein [Populus trichocarpa];; (*SWP) sp|O04866|ARGD_ALNGL (e_value=4e-72) Acetylornithine aminotransferase, mitochondrial OS=Alnus glutinosa GN=AG118 PE=2 SV=1;; (*TAIR) AT1G80600.1 (e_value=8e-69) | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298675-30300513 REVERSE LENGTH=457;; (*ITAG) Solyc08g080370.2.1 (e_value=5e-86) genomic_reference:SL2.40ch08 gene_region:60840952-60844640 transcript_region:SL2.40ch08:60840952..60844640+ go_terms:GO:0003992 functional_description:"Acetylornithine aminotransferase (AHRD V1 **** D8THT2_VOLCA); contains Interpro domain(s) IPR004636 Acetylornithine and succinylornithine aminotransferase "; GO:0003992 NbS00032262g0001.1 protein NbS00039198g0011.1 protein NbS00039198g0007.1 protein NbS00039198g0009.1 protein NbS00006989g0003.1 protein NbS00006989g0005.1 protein NbS00009130g0003.1 protein ; (*GB) gi|255583646|ref|XP_002532578.1| (e_value=5e-45) trehalose-6-phosphate synthase, putative [Ricinus communis];; (*SWP) sp|Q9SUW0|TPPG_ARATH (e_value=2e-45) Probable trehalose-phosphate phosphatase G OS=Arabidopsis thaliana GN=TPPG PE=2 SV=1;; (*TAIR) AT4G22590.1 (e_value=2e-46) | Symbols: TPPG | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:11893707-11895371 REVERSE LENGTH=377;; (*ITAG) Solyc08g079060.2.1 (e_value=4e-59) genomic_reference:SL2.40ch08 gene_region:59876550-59879243 transcript_region:SL2.40ch08:59876550..59879243+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 ***- D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00035571g0003.1 protein NbS00011027g0006.1 protein NbS00008771g0006.1 protein NbS00019956g0103.1 protein NbS00037035g0001.1 protein NbS00028543g0007.1 protein NbS00048043g0002.1 protein ; (*GB) gi|388508836|gb|AFK42484.1| (e_value=5e-31) unknown [Lotus japonicus]; NbS00003288g0004.1 protein NbS00003288g0005.1 protein NbS00004951g0002.1 protein ; (*GB) gi|87241182|gb|ABD33040.1| (e_value=3e-17) Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula]; NbS00004951g0003.1 protein ; (*GB) gi|193784669|dbj|BAG50821.1| (e_value=8e-21) MAP kinase [Nicotiana benthamiana];; (*SWP) sp|Q40532|NTF4_TOBAC (e_value=1e-20) Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1;; (*TAIR) AT2G43790.1 (e_value=2e-17) | Symbols: ATMPK6, MPK6, MAPK6, ATMAPK6 | MAP kinase 6 | chr2:18138477-18140693 FORWARD LENGTH=395;; (*ITAG) Solyc08g014420.2.1 (e_value=5e-20) genomic_reference:SL2.40ch08 gene_region:4354487-4377242 transcript_region:SL2.40ch08:4354487..4377242+ go_terms:GO:0008339 functional_description:"Mitogen-activated protein kinase 2 (AHRD V1 **** Q84MI5_SOLLC); contains Interpro domain(s) IPR008351 JNK MAP kinase "; GO:0008339 NbS00028775g0001.1 protein NbS00027324g0008.1 protein NbS00007905g0006.1 protein NbS00005612g0003.1 protein NbS00005612g0005.1 protein ; (*GB) gi|359495929|ref|XP_002272151.2| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera];; (*TAIR) AT2G43465.1 (e_value=3e-24) | Symbols: | RNA-binding ASCH domain protein | chr2:18047732-18049709 REVERSE LENGTH=388;; (*ITAG) Solyc06g073130.2.1 (e_value=1e-28) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00005612g0105.1 protein NbS00020321g0014.1 protein ; (*GB) gi|359482838|ref|XP_002278937.2| (e_value=1e-17) PREDICTED: uncharacterized protein LOC100253153 [Vitis vinifera];; (*ITAG) Solyc03g121500.2.1 (e_value=5e-28) genomic_reference:SL2.40ch03 gene_region:63633189-63640143 transcript_region:SL2.40ch03:63633189..63640143- functional_description:"Myosin-like protein (AHRD V1 ***- Q9C717_ARATH)"; NbS00020321g0008.1 protein NbS00010865g0006.1 protein NbC24026083g0001.1 protein ; (*GB) gi|193795874|gb|ACF21990.1| (e_value=3e-28) NBS-coding resistance gene protein [Nicotiana tabacum];; (*ITAG) Solyc08g005500.2.1 (e_value=9e-15) genomic_reference:SL2.40ch08 gene_region:374428-377459 transcript_region:SL2.40ch08:374428..377459- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00011552g0003.1 protein NbS00004997g0117.1 protein NbS00011765g0002.1 protein NbS00004032g0008.1 protein ; (*GB) gi|6319167|gb|AAF07192.1|AF193846_1 (e_value=6e-39) branched-chain amino acid aminotransferase [Solanum tuberosum];; (*SWP) sp|Q9FYA6|BCAT5_ARATH (e_value=8e-31) Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1;; (*TAIR) AT5G65780.1 (e_value=6e-32) | Symbols: ATBCAT-5 | branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) | chr5:26316418-26318585 FORWARD LENGTH=415;; (*ITAG) Solyc02g091970.2.1 (e_value=1e-41) genomic_reference:SL2.40ch02 gene_region:47756090-47762810 transcript_region:SL2.40ch02:47756090..47762810- go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q9SNY8_SOLTU); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00009368g0003.1 protein NbS00049966g0004.1 protein NbS00018522g0007.1 protein ; (*GB) gi|255537377|ref|XP_002509755.1| (e_value=1e-19) Transcription initiation factor IIE subunit beta, putative [Ricinus communis];; (*TAIR) AT4G21010.1 (e_value=4e-17) | Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:11226317-11227363 REVERSE LENGTH=275;; (*ITAG) Solyc06g064890.2.1 (e_value=6e-23) genomic_reference:SL2.40ch06 gene_region:36836320-36839870 transcript_region:SL2.40ch06:36836320..36839870- functional_description:"Transcription initiation factor IIE subunit beta (AHRD V1 ***- B6JXL9_SCHJY); contains Interpro domain(s) IPR017935 Transcription factor TFIIE beta subunit-like, DNA-binding "; NbS00018522g0008.1 protein NbS00012171g0002.1 protein NbS00005927g0001.1 protein NbS00030866g0008.1 protein NbS00026258g0013.1 protein NbS00026258g0006.1 protein NbS00020394g0006.1 protein ; (*GB) gi|147843550|emb|CAN81606.1| (e_value=3e-18) hypothetical protein VITISV_008993 [Vitis vinifera]; NbS00012111g0001.1 protein ; (*GB) gi|224111436|ref|XP_002332930.1| (e_value=4e-17) predicted protein [Populus trichocarpa]; NbS00027085g0003.1 protein NbS00027085g0004.1 protein NbS00021096g0003.1 protein NbS00027081g0003.1 protein ; (*GB) gi|147773589|emb|CAN69897.1| (e_value=2e-30) hypothetical protein VITISV_032062 [Vitis vinifera];; (*TAIR) AT4G36980.2 (e_value=4e-29) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). | chr4:17434283-17437012 REVERSE LENGTH=507;; (*ITAG) Solyc02g090850.2.1 (e_value=6e-39) genomic_reference:SL2.40ch02 gene_region:46898348-46906437 transcript_region:SL2.40ch02:46898348..46906437+ functional_description:"Splicing factor arginine/serine-rich 16 (AHRD V1 *-*- C0HB74_SALSA); contains Interpro domain(s) IPR019147 Splicing factor, suppressor of white apricot "; NbS00027081g0104.1 protein NbS00027081g0105.1 protein NbS00027081g0106.1 protein NbS00027081g0107.1 protein NbS00027081g0201.1 protein NbS00001843g0011.1 protein ; (*SWP) sp|Q8LEZ4|NFD5_ARATH (e_value=2e-13) Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1;; (*TAIR) AT1G19520.1 (e_value=1e-14) | Symbols: NFD5 | pentatricopeptide (PPR) repeat-containing protein | chr1:6760032-6762581 FORWARD LENGTH=725;; (*ITAG) Solyc07g025210.1.1 (e_value=5e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:26689621-26690748 transcript_region:SL2.40ch07:26689621..26690748- functional_description:"Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial (AHRD V1 ***- NFD5_ARATH)"; NbS00001843g0005.1 protein NbS00001843g0008.1 protein NbS00004277g0003.1 protein NbS00004277g0104.1 protein NbS00020636g0012.1 protein NbS00020636g0006.1 protein NbS00020636g0009.1 protein NbS00024645g0001.1 protein NbS00010666g0011.1 protein NbS00010666g0024.1 protein NbS00004233g0004.1 protein ; (*ITAG) Solyc05g043430.2.1 (e_value=1e-13) genomic_reference:SL2.40ch05 gene_region:55518806-55524126 transcript_region:SL2.40ch05:55518806..55524126- go_terms:GO:0016787 functional_description:"Carboxymethylenebutenolidase-like protein (AHRD V1 ***- Q8LQS5_ORYSJ); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0016787 NbS00028839g0009.1 protein NbS00007858g0005.1 protein NbS00038693g0003.1 protein NbS00031168g0104.1 protein NbS00031168g0107.1 protein NbS00034739g0002.1 protein ; (*GB) gi|224113825|ref|XP_002316585.1| (e_value=7e-13) predicted protein [Populus trichocarpa]; NbS00017627g0002.1 protein NbS00004039g0108.1 protein NbS00025945g0004.1 protein NbC25387151g0001.1 protein ; (*GB) gi|350537409|ref|NP_001234292.1| (e_value=4e-44) pirin-like protein [Solanum lycopersicum];; (*SWP) sp|Q9SEE4|PIRL_SOLLC (e_value=1e-45) Pirin-like protein OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT1G50590.1 (e_value=5e-31) | Symbols: | RmlC-like cupins superfamily protein | chr1:18732378-18734053 REVERSE LENGTH=310;; (*ITAG) Solyc09g098160.2.1 (e_value=8e-47) genomic_reference:SL2.40ch09 gene_region:67314368-67316427 transcript_region:SL2.40ch09:67314368..67316427+ go_terms:GO:0005516,GO:0003712 functional_description:"Pirin-like protein (AHRD V1 ***- B6TZU6_MAIZE); contains Interpro domain(s) IPR012093 Pirin "; GO:0005516,GO:0003712 NbS00006659g0001.1 protein NbS00001073g0005.1 protein NbS00006058g0003.1 protein NbS00006058g0004.1 protein NbS00012347g0003.1 protein NbS00012347g0004.1 protein NbS00012347g0006.1 protein ; (*GB) gi|147863477|emb|CAN84052.1| (e_value=5e-23) hypothetical protein VITISV_015746 [Vitis vinifera]; NbS00026463g0010.1 protein NbS00046656g0003.1 protein ; (*GB) gi|170676238|gb|ACB30358.1| (e_value=8e-23) putative scarecrow protein [Capsicum annuum];; (*ITAG) Solyc07g063940.1.1 (e_value=6e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch07 gene_region:63488513-63490264 transcript_region:SL2.40ch07:63488513..63490264- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00008407g0002.1 protein NbS00011366g0004.1 protein NbS00011366g0102.1 protein NbS00011366g0105.1 protein NbS00015803g0007.1 protein NbS00015803g0104.1 protein NbS00015803g0109.1 protein NbS00018486g0003.1 protein NbS00018486g0006.1 protein NbS00019413g0005.1 protein NbS00029455g0002.1 protein NbS00029455g0003.1 protein NbS00029455g0004.1 protein NbS00012022g0002.1 protein NbS00061063g0001.1 protein NbS00002111g0002.1 protein ; (*ITAG) Solyc09g098050.2.1 (e_value=8e-23) genomic_reference:SL2.40ch09 gene_region:67235158-67238245 transcript_region:SL2.40ch09:67235158..67238245+ functional_description:"Ankyrin repeat-containing protein At5g02620 (AHRD V1 *--- Y5262_ARATH); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00034873g0001.1 protein ; (*GB) gi|255571576|ref|XP_002526734.1| (e_value=2e-19) DNA-directed RNA polymerase I largest subunit, putative [Ricinus communis];; (*TAIR) AT3G57660.1 (e_value=3e-17) | Symbols: NRPA1 | nuclear RNA polymerase A1 | chr3:21353746-21362814 FORWARD LENGTH=1670;; (*ITAG) Solyc10g080350.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60948769-60973144 transcript_region:SL2.40ch10:60948769..60973144+ go_terms:GO:0005634,GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SL65_RICCO); contains Interpro domain(s) IPR015699 DNA-directed RNA pol I, largest subunit "; GO:0005634,GO:0006350 NbS00020854g0010.1 protein NbS00015320g0005.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-24) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00053668g0003.1 protein ; (*GB) gi|255541514|ref|XP_002511821.1| (e_value=1e-36) carbonyl reductase, putative [Ricinus communis];; (*SWP) sp|Q9M2E2|SDR1_ARATH (e_value=5e-37) (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=4e-38) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094220.2.1 (e_value=6e-46) genomic_reference:SL2.40ch01 gene_region:77540207-77542985 transcript_region:SL2.40ch01:77540207..77542985+ go_terms:GO:0004090 functional_description:"Carbonyl reductase 3 (AHRD V1 **** B6TRS7_MAIZE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0004090 NbS00003478g0003.1 protein NbS00030010g0006.1 protein NbS00013353g0002.1 protein NbS00037377g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00038968g0105.1 protein NbS00051291g0002.1 protein NbS00036974g0005.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=3e-13) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00010022g0002.1 protein NbS00010022g0003.1 protein ; (*GB) gi|255576613|ref|XP_002529197.1| (e_value=3e-125) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT3G14120.2 (e_value=2e-119) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 271 Blast hits to 268 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 69; Plants - 52; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:4677993-4685455 FORWARD LENGTH=1077;; (*ITAG) Solyc12g049410.1.1 (e_value=2e-162) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:46417285-46438427 transcript_region:SL2.40ch12:46417285..46438427+ go_terms:GO:0005643 functional_description:"Nuclear pore complex protein Nup107 (AHRD V1 *-*- B5X120_SALSA); contains Interpro domain(s) IPR007252 Nuclear pore protein 84/107 "; GO:0005643 NbS00025964g0001.1 protein NbS00025964g0002.1 protein NbS00025964g0003.1 protein NbS00039143g0004.1 protein ; (*ITAG) Solyc05g014020.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:7518491-7521889 transcript_region:SL2.40ch05:7518491..7521889- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00039143g0008.1 protein NbS00026070g0008.1 protein NbS00047006g0004.1 protein NbS00004612g0002.1 protein NbS00021082g0006.1 protein NbS00028493g0005.1 protein NbS00010193g0001.1 protein ; (*GB) gi|255545122|ref|XP_002513622.1| (e_value=2e-20) Tellurite resistance protein tehA, putative [Ricinus communis];; (*SWP) sp|Q9FLV9|SLAH3_ARATH (e_value=3e-20) S-type anion channel SLAH3 OS=Arabidopsis thaliana GN=SLAH3 PE=1 SV=1;; (*TAIR) AT5G24030.1 (e_value=2e-21) | Symbols: SLAH3 | SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635;; (*ITAG) Solyc06g036440.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:22680542-22683163 transcript_region:SL2.40ch06:22680542..22683163+ go_terms:GO:0005215 functional_description:"C4-dicarboxylate transporter/malic acid transport family protein (AHRD V1 **** D7M2F7_ARALY); contains Interpro domain(s) IPR004695 C4-dicarboxylate transporter/malic acid transport protein "; GO:0005215 NbS00010193g0002.1 protein NbS00004087g0005.1 protein NbS00048449g0006.1 protein NbS00019000g0002.1 protein NbS00030400g0004.1 protein NbS00024291g0003.1 protein ; (*ITAG) Solyc11g056310.1.1 (e_value=3e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43097177-43097491 transcript_region:SL2.40ch11:43097177..43097491- go_terms:GO:0003676,GO:0005840 functional_description:"30S ribosomal protein S13 (AHRD V1 ***- D3L425_9BACT); contains Interpro domain(s) IPR001892 Ribosomal protein S13 "; GO:0003676,GO:0005840 NbS00024291g0005.1 protein NbS00024291g0006.1 protein NbS00024291g0007.1 protein NbS00015794g0011.1 protein NbS00015794g0012.1 protein NbS00015794g0008.1 protein NbS00034186g0006.1 protein NbS00034186g0008.1 protein NbS00028728g0001.1 protein NbS00001875g0013.1 protein NbS00001875g0014.1 protein ; (*GB) gi|18413175|ref|NP_567342.1| (e_value=3e-21) phosphotyrosyl phosphatase activator (PTPA) family protein [Arabidopsis thaliana];; (*TAIR) AT4G08960.1 (e_value=7e-24) | Symbols: | phosphotyrosyl phosphatase activator (PTPA) family protein | chr4:5746326-5747994 FORWARD LENGTH=392;; (*ITAG) Solyc01g008280.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:2391529-2395313 transcript_region:SL2.40ch01:2391529..2395313+ go_terms:GO:0008601 functional_description:"Serine/threonine-protein phosphatase 2A activator 2 (AHRD V1 **** B6TQY2_MAIZE); contains Interpro domain(s) IPR004327 Phosphotyrosyl phosphatase activator, PTPA "; GO:0008601 NbS00001875g0008.1 protein NbS00001875g0010.1 protein NbS00041808g0002.1 protein ; (*GB) gi|297797890|ref|XP_002866829.1| (e_value=3e-11) hypothetical protein ARALYDRAFT_327857 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G39050.1 (e_value=1e-13) | Symbols: | Kinesin motor family protein | chr4:18193462-18200148 FORWARD LENGTH=1055;; (*ITAG) Solyc11g044880.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36299654-36312937 transcript_region:SL2.40ch11:36299654..36312937+ go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00041808g0003.1 protein NbS00014451g0004.1 protein NbS00006448g0006.1 protein NbS00010017g0002.1 protein NbS00027910g0007.1 protein NbS00035410g0004.1 protein NbS00009718g0011.1 protein ; (*ITAG) Solyc05g008920.2.1 (e_value=3e-14) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00002989g0009.1 protein NbS00026751g0001.1 protein NbS00037075g0008.1 protein ; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=8e-17) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=2e-18) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT3G54920.1 (e_value=5e-17) | Symbols: PMR6 | Pectin lyase-like superfamily protein | chr3:20345311-20348477 FORWARD LENGTH=501;; (*ITAG) Solyc02g087670.2.1 (e_value=8e-22) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00005094g0004.1 protein NbS00041541g0002.1 protein NbS00000765g0002.1 protein ; (*ITAG) Solyc04g080420.2.1 (e_value=6e-21) genomic_reference:SL2.40ch04 gene_region:62186583-62188782 transcript_region:SL2.40ch04:62186583..62188782- functional_description:"Myrosinase binding protein (AHRD V1 **-- P93065_BRANA); contains Interpro domain(s) IPR001229 Mannose-binding lectin "; NbS00025064g0004.1 protein NbS00025064g0006.1 protein ; (*GB) gi|242037021|ref|XP_002465905.1| (e_value=5e-19) hypothetical protein SORBIDRAFT_01g047910 [Sorghum bicolor];; (*SWP) sp|Q8H6H0|PHT16_ORYSJ (e_value=5e-20) Inorganic phosphate transporter 1-6 OS=Oryza sativa subsp. japonica GN=PHT1-6 PE=1 SV=1;; (*TAIR) AT3G54700.1 (e_value=1e-20) | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248463-20250070 REVERSE LENGTH=535;; (*ITAG) Solyc09g066410.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:60426564-60428153 transcript_region:SL2.40ch09:60426564..60428153+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** Q9LLS5_TOBAC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00025064g0009.1 protein NbS00053812g0003.1 protein NbS00011876g0001.1 protein NbS00017773g0009.1 protein ; (*GB) gi|34452087|gb|AAQ72500.1| (e_value=2e-35) MADS-box protein 15 [Petunia x hybrida];; (*SWP) sp|Q9AT76|AGL27_ARATH (e_value=3e-13) Agamous-like MADS-box protein AGL27 OS=Arabidopsis thaliana GN=AGL27 PE=1 SV=1;; (*TAIR) AT1G77080.4 (e_value=2e-14) | Symbols: MAF1, FLM, AGL27 | K-box region and MADS-box transcription factor family protein | chr1:28955679-28959845 FORWARD LENGTH=196;; (*ITAG) Solyc12g087810.1.1 (e_value=5e-29) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:61750004-61752296 transcript_region:SL2.40ch12:61750004..61752296- go_terms:GO:0005634 functional_description:"Flowering locus C-like MADS-box protein (AHRD V1 ***- A6YGQ0_9ROSI); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0005634 NbS00015423g0002.1 protein NbS00026911g0008.1 protein NbS00016946g0007.1 protein NbS00030629g0002.1 protein NbS00003594g0002.1 protein NbS00030950g0004.1 protein NbS00014223g0001.1 protein NbS00014223g0103.1 protein NbS00014223g0106.1 protein NbS00004010g0004.1 protein ; (*GB) gi|255551295|ref|XP_002516694.1| (e_value=8e-26) ammonium transporter, putative [Ricinus communis];; (*SWP) sp|O04161|AMT12_SOLLC (e_value=6e-23) Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1;; (*TAIR) AT4G28700.1 (e_value=8e-24) | Symbols: AMT1;4 | ammonium transporter 1;4 | chr4:14161681-14163195 FORWARD LENGTH=504;; (*ITAG) Solyc09g090730.1.1 (e_value=2e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:65513401-65514873 transcript_region:SL2.40ch09:65513401..65514873- go_terms:GO:0015398 functional_description:"Ammonium transporter (AHRD V1 **** Q09J80_9ROSI); contains Interpro domain(s) IPR001905 Ammonium transporter "; GO:0015398 NbS00035576g0002.1 protein NbS00018848g0004.1 protein ; (*ITAG) Solyc02g088160.2.1 (e_value=1e-15) genomic_reference:SL2.40ch02 gene_region:44899497-44904078 transcript_region:SL2.40ch02:44899497..44904078+ functional_description:"UPF0497 membrane protein Os06g0231050 (AHRD V1 *-*- U4974_ORYSJ); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00004291g0003.1 protein NbS00007991g0010.1 protein NbS00020149g0013.1 protein NbS00020149g0009.1 protein NbS00027690g0014.1 protein NbS00027690g0016.1 protein ; (*ITAG) Solyc01g007590.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:1877388-1878459 transcript_region:SL2.40ch01:1877388..1878459- go_terms:GO:0005840,GO:0015934 functional_description:"50S ribosomal protein L14 chloroplastic (AHRD V1 ***- D3WBB8_9BORA); contains Interpro domain(s) IPR005745 Ribosomal protein L14, bacterial-type "; GO:0005840,GO:0015934 NbS00007028g0006.1 protein NbS00042252g0006.1 protein NbS00005003g0011.1 protein NbS00005003g0007.1 protein NbS00029149g0006.1 protein NbS00038956g0002.1 protein NbS00021076g0011.1 protein NbS00021076g0007.1 protein NbS00021076g0008.1 protein NbS00004468g0003.1 protein NbS00042494g0004.1 protein NbS00032116g0002.1 protein NbS00013757g0011.1 protein NbS00003170g0008.1 protein NbS00003170g0009.1 protein NbS00015837g0002.1 protein ; (*GB) gi|225464511|ref|XP_002270039.1| (e_value=2e-52) PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Vitis vinifera];; (*SWP) sp|A2RVM0|TIC32_ARATH (e_value=6e-52) Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1;; (*TAIR) AT4G23430.3 (e_value=4e-53) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:12229171-12231493 FORWARD LENGTH=310;; (*ITAG) Solyc08g081200.2.1 (e_value=3e-63) genomic_reference:SL2.40ch08 gene_region:61431924-61435328 transcript_region:SL2.40ch08:61431924..61435328+ go_terms:GO:0046983 functional_description:"Short-chain dehydrogenase/reductase family protein (AHRD V1 ***- D7LZK0_ARALY); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0046983 NbS00028999g0006.1 protein NbS00018264g0005.1 protein ; (*GB) gi|297738319|emb|CBI27520.3| (e_value=6e-12) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc05g014200.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:7965137-7975357 transcript_region:SL2.40ch05:7965137..7975357- functional_description:"Myosin-like protein (AHRD V1 *-*- Q6K5K0_ORYSJ)"; NbS00040937g0007.1 protein NbS00040937g0010.1 protein NbS00023409g0009.1 protein NbS00020361g0005.1 protein NbS00003713g0002.1 protein NbS00003713g0005.1 protein NbS00015793g0002.1 protein NbS00017361g0005.1 protein NbS00017361g0007.1 protein NbS00001367g0006.1 protein NbC24994109g0001.1 protein ; (*ITAG) Solyc11g065260.1.1 (e_value=3e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47715490-47734377 transcript_region:SL2.40ch11:47715490..47734377- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00008764g0013.1 protein NbS00007319g0008.1 protein NbS00007319g0009.1 protein NbS00031397g0006.1 protein NbS00000719g0006.1 protein NbS00047193g0006.1 protein NbS00047193g0007.1 protein NbS00006756g0013.1 protein NbS00006756g0016.1 protein ; (*ITAG) Solyc08g081050.2.1 (e_value=7e-20) genomic_reference:SL2.40ch08 gene_region:61333640-61342026 transcript_region:SL2.40ch08:61333640..61342026+ go_terms:GO:0005634,GO:0006350,GO:0003677 functional_description:"BAH domain containing protein (AHRD V1 ***- B6U2A8_MAIZE); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0006350,GO:0003677 NbS00027376g0012.1 protein NbS00043138g0004.1 protein NbS00029682g0002.1 protein ; (*GB) gi|357452689|ref|XP_003596621.1| (e_value=1e-19) Autophagy-related protein [Medicago truncatula];; (*ITAG) Solyc12g005230.1.1 (e_value=9e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:147174-153831 transcript_region:SL2.40ch12:147174..153831+ functional_description:"Breast carcinoma amplified sequence 3 (Fragment) (AHRD V1 *--- B1AR77_MOUSE); contains Interpro domain(s) IPR010847 Harpin-induced 1 "; NbS00020525g0003.1 protein NbS00029011g0106.1 protein NbS00042624g0001.1 protein NbS00042624g0002.1 protein NbS00056603g0006.1 protein NbS00003077g0005.1 protein NbS00003077g0006.1 protein NbS00003077g0111.1 protein NbS00003077g0108.1 protein NbS00003077g0109.1 protein NbS00004583g0005.1 protein NbS00000301g0006.1 protein NbS00029081g0007.1 protein ; (*GB) gi|225461734|ref|XP_002283379.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100267416 [Vitis vinifera];; (*TAIR) AT1G53460.1 (e_value=3e-29) | Symbols: | BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink). | chr1:19954558-19956509 REVERSE LENGTH=314;; (*ITAG) Solyc10g007460.2.1 (e_value=1e-37) genomic_reference:SL2.40ch10 gene_region:1813744-1816473 transcript_region:SL2.40ch10:1813744..1816473+ functional_description:"Zinc finger (Ran-binding) family protein (AHRD V1 *--- D7KYC9_ARALY)"; NbS00005391g0001.1 protein NbS00016561g0008.1 protein ; (*GB) gi|255547251|ref|XP_002514683.1| (e_value=5e-27) transcription factor, putative [Ricinus communis];; (*TAIR) AT5G62380.1 (e_value=1e-14) | Symbols: VND6, ANAC101, NAC101 | NAC-domain protein 101 | chr5:25050684-25051858 FORWARD LENGTH=348;; (*ITAG) Solyc08g006020.2.1 (e_value=3e-12) genomic_reference:SL2.40ch08 gene_region:784730-788036 transcript_region:SL2.40ch08:784730..788036+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** B6U2D4_MAIZE); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00013626g0004.1 protein NbS00013626g0006.1 protein ; (*GB) gi|194695444|gb|ACF81806.1| (e_value=2e-24) unknown [Zea mays];; (*SWP) sp|Q6P819|RCD1_XENTR (e_value=4e-16) Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis GN=rqcd1 PE=2 SV=1;; (*TAIR) AT5G12980.1 (e_value=2e-21) | Symbols: | Cell differentiation, Rcd1-like protein | chr5:4105562-4108139 REVERSE LENGTH=311;; (*ITAG) Solyc07g049780.1.1 (e_value=1e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:57489276-57493827 transcript_region:SL2.40ch07:57489276..57493827- go_terms:GO:0042802 functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- D0NQB7_PHYIN); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; GO:0042802 NbS00023031g0003.1 protein NbS00000187g0008.1 protein NbS00013823g0002.1 protein NbS00018593g0002.1 protein NbS00018593g0004.1 protein NbS00039291g0002.1 protein ; (*GB) gi|255563570|ref|XP_002522787.1| (e_value=3e-29) Proliferating-cell nucleolar antigen p120, putative [Ricinus communis];; (*SWP) sp|P40991|NOP2_YEAST (e_value=1e-21) Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1;; (*TAIR) AT5G55920.1 (e_value=1e-31) | Symbols: OLI2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22645742-22649383 REVERSE LENGTH=682;; (*ITAG) Solyc07g052110.2.1 (e_value=4e-31) genomic_reference:SL2.40ch07 gene_region:57978811-57988010 transcript_region:SL2.40ch07:57978811..57988010+ go_terms:GO:0006364 functional_description:"Ribosomal RNA small subunit methyltransferase F (AHRD V1 *-*- RSMF_KLEP7); contains Interpro domain(s) IPR011023 Nop2p "; GO:0006364 NbS00039291g0102.1 protein NbS00002579g0101.1 protein NbS00009801g0003.1 protein NbS00027247g0003.1 protein NbS00059258g0001.1 protein NbS00006000g0001.1 protein NbS00023215g0004.1 protein NbS00008911g0004.1 protein ; (*GB) gi|147862555|emb|CAN81495.1| (e_value=3e-22) hypothetical protein VITISV_031969 [Vitis vinifera]; NbS00008525g0004.1 protein NbS00034260g0002.1 protein NbS00035767g0005.1 protein NbS00041703g0007.1 protein NbS00041703g0008.1 protein NbS00019857g0001.1 protein NbS00019958g0003.1 protein NbS00034874g0002.1 protein NbC23750043g0001.1 protein ; (*GB) gi|145308227|gb|ABP57378.1| (e_value=2e-31) GNOM-like 1 protein [Nicotiana tabacum];; (*SWP) sp|Q42510|EMB30_ARATH (e_value=3e-26) Pattern formation protein EMB30 OS=Arabidopsis thaliana GN=EMB30 PE=1 SV=1;; (*TAIR) AT1G13980.2 (e_value=2e-27) | Symbols: GN | sec7 domain-containing protein | chr1:4789587-4794397 FORWARD LENGTH=1451;; (*ITAG) Solyc02g067010.2.1 (e_value=7e-35) genomic_reference:SL2.40ch02 gene_region:31828637-31834655 transcript_region:SL2.40ch02:31828637..31834655- go_terms:GO:0042803 functional_description:"Guanine nucleotide exchange factor-like protein (AHRD V1 **-- Q9LZX8_ARATH); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0042803 NbS00018879g0017.1 protein NbS00040668g0002.1 protein NbS00028389g0010.1 protein NbS00003951g0011.1 protein NbS00003951g0004.1 protein ; (*GB) gi|147816091|emb|CAN72890.1| (e_value=5e-47) hypothetical protein VITISV_022310 [Vitis vinifera];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=4e-39) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=3e-40) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=5e-56) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00003951g0010.1 protein NbS00044798g0002.1 protein NbS00013666g0005.1 protein NbS00012513g0003.1 protein NbS00012513g0005.1 protein NbS00006066g0001.1 protein NbS00006066g0002.1 protein ; (*GB) gi|255568567|ref|XP_002525257.1| (e_value=3e-51) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q54II8|U553_DICDI (e_value=4e-19) UPF0553 protein OS=Dictyostelium discoideum GN=DDB_G0288723 PE=3 SV=1;; (*ITAG) Solyc02g092510.2.1 (e_value=7e-64) genomic_reference:SL2.40ch02 gene_region:48156357-48160516 transcript_region:SL2.40ch02:48156357..48160516+ functional_description:"UPF0553 protein C9orf64 (AHRD V1 **-- CI064_HUMAN); contains Interpro domain(s) IPR019438 Protein of unknown function DUF2419 "; NbS00020955g0002.1 protein NbS00020955g0003.1 protein NbS00020955g0107.1 protein NbS00050729g0005.1 protein NbS00038688g0002.1 protein NbS00045483g0003.1 protein ; (*GB) gi|224124652|ref|XP_002319385.1| (e_value=8e-96) predicted protein [Populus trichocarpa];; (*TAIR) AT1G12470.1 (e_value=1e-91) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=3e-105) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00045604g0006.1 protein NbS00026566g0003.1 protein NbS00001346g0003.1 protein NbS00029270g0004.1 protein NbS00001309g0015.1 protein ; (*GB) gi|238013998|gb|ACR38034.1| (e_value=3e-24) unknown [Zea mays];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=1e-22) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=1e-23) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=3e-26) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00001309g0009.1 protein NbS00058821g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-26) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00058821g0003.1 protein NbS00009258g0005.1 protein NbS00007445g0006.1 protein NbS00021556g0014.1 protein ; (*GB) gi|30013681|gb|AAP03883.1| (e_value=2e-25) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*ITAG) Solyc06g007190.2.1 (e_value=2e-22) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00021556g0017.1 protein NbS00021556g0007.1 protein NbS00021556g0010.1 protein NbS00016615g0011.1 protein NbS00016615g0008.1 protein NbS00009945g0010.1 protein NbS00039254g0005.1 protein NbS00028139g0002.1 protein NbS00032198g0008.1 protein NbS00040155g0002.1 protein NbS00003194g0005.1 protein ; (*GB) gi|359477035|ref|XP_002265701.2| (e_value=1e-29) PREDICTED: uncharacterized protein LOC100265343 [Vitis vinifera];; (*TAIR) AT5G65950.1 (e_value=8e-25) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26380290-26384960 FORWARD LENGTH=1190;; (*ITAG) Solyc02g082280.2.1 (e_value=4e-38) genomic_reference:SL2.40ch02 gene_region:40562681-40571418 transcript_region:SL2.40ch02:40562681..40571418+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY7_ARATH); contains Interpro domain(s) IPR012880 Protein of unknown function DUF1683, C-terminal "; NbS00007970g0002.1 protein ; (*GB) gi|225436170|ref|XP_002266075.1| (e_value=5e-17) PREDICTED: ATP-dependent zinc metalloprotease FtsH [Vitis vinifera];; (*TAIR) AT4G23940.1 (e_value=4e-17) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=1e-21) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00060011g0001.1 protein NbS00060011g0003.1 protein NbS00016441g0002.1 protein NbS00013957g0003.1 protein NbS00057548g0003.1 protein NbS00029361g0012.1 protein NbS00029361g0007.1 protein NbS00014463g0004.1 protein NbS00061070g0006.1 protein NbS00015732g0002.1 protein ; (*GB) gi|297803624|ref|XP_002869696.1| (e_value=2e-59) hypothetical protein ARALYDRAFT_492340 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G50780.1 (e_value=6e-61) | Symbols: | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr5:20650269-20654948 FORWARD LENGTH=819;; (*ITAG) Solyc01g009920.1.1 (e_value=3e-100) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:4490206-4495395 transcript_region:SL2.40ch01:4490206..4495395- go_terms:GO:0005524 functional_description:"MORC family CW-type zinc finger 3 (AHRD V1 *--- Q0D2C9_XENTR); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00008691g0003.1 protein NbS00018845g0008.1 protein NbS00024282g0010.1 protein NbS00010363g0006.1 protein NbC26229648g0001.1 protein NbS00015960g0001.1 protein NbS00038435g0002.1 protein NbS00039082g0005.1 protein NbS00017175g0003.1 protein NbS00055674g0008.1 protein NbS00000767g0006.1 protein NbS00000767g0009.1 protein NbS00024778g0001.1 protein NbS00024778g0002.1 protein ; (*GB) gi|359495616|ref|XP_003635038.1| (e_value=3e-32) PREDICTED: phosphoglycolate phosphatase isoform 2 [Vitis vinifera];; (*SWP) sp|P19881|PNPP_YEAST (e_value=1e-15) 4-nitrophenylphosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PHO13 PE=1 SV=2;; (*TAIR) AT5G47760.1 (e_value=3e-30) | Symbols: PGLP2, ATPGLP2, ATPK5 | 2-phosphoglycolate phosphatase 2 | chr5:19343121-19344979 REVERSE LENGTH=301;; (*ITAG) Solyc04g015150.2.1 (e_value=6e-39) genomic_reference:SL2.40ch04 gene_region:5322712-5328505 transcript_region:SL2.40ch04:5322712..5328505- go_terms:GO:0008967,GO:0003869 functional_description:"Phosphoglycolate phosphatase (AHRD V1 **-* C1FHY2_9CHLO); contains Interpro domain(s) IPR006349 2-phosphoglycolate phosphatase, eukaryotic "; GO:0008967,GO:0003869 NbS00024778g0004.1 protein NbS00030490g0001.1 protein NbS00010765g0106.1 protein NbS00010765g0109.1 protein NbS00010765g0110.1 protein NbS00043911g0003.1 protein NbS00043911g0004.1 protein ; (*SWP) sp|P0C1M0|ATPG_MAIZE (e_value=4e-14) ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1;; (*TAIR) AT1G15700.1 (e_value=5e-15) | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit protein | chr1:5402629-5403789 REVERSE LENGTH=386;; (*ITAG) Solyc12g005060.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:28551-29600 transcript_region:SL2.40ch12:28551..29600+ go_terms:GO:0045261 functional_description:"ATP synthase gamma chain (AHRD V1 ***- C6TES6_SOYBN); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0045261 NbC25825319g0002.1 protein ; (*ITAG) Solyc05g026510.2.1 (e_value=1e-15) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbC23704004g0001.1 protein ; (*ITAG) Solyc08g075730.2.1 (e_value=3e-26) genomic_reference:SL2.40ch08 gene_region:57017113-57024895 transcript_region:SL2.40ch08:57017113..57024895- go_terms:GO:0005515 functional_description:"Anamorsin homolog (AHRD V1 ***- DRE2_VITVI); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 "; GO:0005515 NbS00030195g0003.1 protein NbS00060270g0002.1 protein NbS00024242g0003.1 protein ; (*ITAG) Solyc10g078300.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00011536g0012.1 protein NbS00011536g0008.1 protein ; (*GB) gi|224074887|ref|XP_002304476.1| (e_value=2e-14) predicted protein [Populus trichocarpa];; (*TAIR) AT1G63160.1 (e_value=9e-16) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=4e-17) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00033269g0004.1 protein NbS00007739g0003.1 protein NbS00007739g0112.1 protein NbS00007739g0110.1 protein NbC25176843g0002.1 protein NbS00025084g0005.1 protein NbS00025084g0006.1 protein NbS00035087g0002.1 protein NbS00058574g0001.1 protein ; (*ITAG) Solyc01g103250.2.1 (e_value=7e-15) genomic_reference:SL2.40ch01 gene_region:83659592-83668821 transcript_region:SL2.40ch01:83659592..83668821+ go_terms:GO:0005634,GO:0008270 functional_description:"Histone-lysine N-methyltransferase NSD3 (AHRD V1 *--- NSD3_HUMAN); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00014269g0007.1 protein NbS00028866g0002.1 protein NbS00051571g0004.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=7e-16) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*TAIR) AT1G24430.1 (e_value=2e-12) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc01g105550.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85449541-85450899 transcript_region:SL2.40ch01:85449541..85450899+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK69_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00051571g0006.1 protein NbS00060447g0003.1 protein ; (*GB) gi|359493766|ref|XP_002279336.2| (e_value=1e-16) PREDICTED: ABC transporter B family member 15-like [Vitis vinifera];; (*ITAG) Solyc05g013900.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:7344240-7345552 transcript_region:SL2.40ch05:7344240..7345552- go_terms:GO:0016021 functional_description:"Abc transporter family protein (AHRD V1 ***- D7LPS8_ARALY); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0016021 NbC25546442g0001.1 protein ; (*GB) gi|224083336|ref|XP_002306986.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFX2|PUB43_ARATH (e_value=2e-19) U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1;; (*TAIR) AT1G76390.2 (e_value=2e-20) | Symbols: | ARM repeat superfamily protein | chr1:28655914-28658531 FORWARD LENGTH=811;; (*ITAG) Solyc04g082570.2.1 (e_value=8e-31) genomic_reference:SL2.40ch04 gene_region:63806651-63811686 transcript_region:SL2.40ch04:63806651..63811686+ go_terms:GO:0004842 functional_description:"U-box domain-containing protein (AHRD V1 **-- Q1ENX4_MUSAC); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00003526g0104.1 protein NbS00003526g0105.1 protein NbS00003526g0107.1 protein NbS00016159g0003.1 protein ; (*GB) gi|388496926|gb|AFK36529.1| (e_value=3e-71) unknown [Lotus japonicus];; (*SWP) sp|O22609|DEGP1_ARATH (e_value=5e-71) Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2;; (*TAIR) AT3G27925.1 (e_value=4e-72) | Symbols: DEGP1, Deg1 | DegP protease 1 | chr3:10366659-10368864 REVERSE LENGTH=439;; (*ITAG) Solyc02g086830.2.1 (e_value=3e-74) genomic_reference:SL2.40ch02 gene_region:44017964-44022130 transcript_region:SL2.40ch02:44017964..44022130+ go_terms:GO:0004252 functional_description:"Protease Do-like (S2 serine-type protease) (AHRD V1 **** Q7UQ70_RHOBA); contains Interpro domain(s) IPR001254 Peptidase S1 and S6, chymotrypsin/Hap "; GO:0004252 NbS00000729g0010.1 protein NbS00000970g0001.1 protein NbS00000970g0106.1 protein NbS00000872g0003.1 protein NbS00013048g0001.1 protein ; (*GB) gi|255540539|ref|XP_002511334.1| (e_value=3e-18) copper amine oxidase, putative [Ricinus communis];; (*TAIR) AT2G42490.1 (e_value=6e-18) | Symbols: | Copper amine oxidase family protein | chr2:17691600-17695526 REVERSE LENGTH=776;; (*ITAG) Solyc05g013440.2.1 (e_value=7e-21) genomic_reference:SL2.40ch05 gene_region:6501962-6511458 transcript_region:SL2.40ch05:6501962..6511458- go_terms:GO:0005515,GO:0008131 functional_description:"Primary amine oxidase (AHRD V1 **** B4WL51_9SYNE); contains Interpro domain(s) IPR000269 Copper amine oxidase "; GO:0005515,GO:0008131 NbS00013048g0002.1 protein NbS00025061g0004.1 protein NbS00025061g0102.1 protein NbS00002200g0002.1 protein NbS00020900g0002.1 protein ; (*GB) gi|297740202|emb|CBI30384.3| (e_value=5e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G27010.1 (e_value=1e-39) | Symbols: | ARM repeat superfamily protein | chr5:9503315-9507569 REVERSE LENGTH=863;; (*ITAG) Solyc01g007140.2.1 (e_value=3e-95) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00037318g0002.1 protein ; (*GB) gi|225442505|ref|XP_002284009.1| (e_value=6e-24) PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform 2 [Vitis vinifera];; (*SWP) sp|Q9ZU11|ATB15_ARATH (e_value=5e-22) Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1;; (*TAIR) AT1G52150.3 (e_value=3e-23) | Symbols: ATHB-15, ATHB15, CNA, ICU4 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | chr1:19410118-19413961 REVERSE LENGTH=794;; (*ITAG) Solyc03g120910.2.1 (e_value=8e-29) genomic_reference:SL2.40ch03 gene_region:63195847-63202781 transcript_region:SL2.40ch03:63195847..63202781+ go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00000881g0009.1 protein NbS00000881g0105.1 protein NbS00041445g0002.1 protein ; (*GB) gi|225435441|ref|XP_002282785.1| (e_value=1e-89) PREDICTED: armadillo repeat-containing protein 8 [Vitis vinifera];; (*TAIR) AT1G51350.1 (e_value=2e-81) | Symbols: | ARM repeat superfamily protein | chr1:19035851-19038738 FORWARD LENGTH=666;; (*ITAG) Solyc11g065750.1.1 (e_value=5e-126) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48428800-48442402 transcript_region:SL2.40ch11:48428800..48442402- go_terms:GO:0005488 functional_description:"Armadillo repeat-containing protein (AHRD V1 *-*- Q55D97_DICDI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00038164g0003.1 protein NbS00038164g0005.1 protein NbS00019154g0003.1 protein NbS00005634g0005.1 protein NbS00046841g0002.1 protein ; (*GB) gi|387177382|gb|AFJ67808.1| (e_value=4e-51) santalene and bergamotene synthase-like protein [Solanum habrochaites];; (*SWP) sp|C1K5M3|PHS1_SOLLC (e_value=1e-52) Beta-phellandrene synthase (neryl-diphosphate-cyclizing), chloroplastic OS=Solanum lycopersicum GN=PHS1 PE=1 SV=1;; (*TAIR) AT1G79460.1 (e_value=7e-30) | Symbols: GA2, KS, ATKS, ATKS1, KS1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr1:29890568-29894436 FORWARD LENGTH=785;; (*ITAG) Solyc08g005720.2.1 (e_value=2e-54) genomic_reference:SL2.40ch08 gene_region:578243-586720 transcript_region:SL2.40ch08:578243..586720+ go_terms:GO:0009899 functional_description:"Ent-kaurene synthase-like protein 1 (AHRD V1 **** Q673F9_HORVD); contains Interpro domain(s) IPR005630 Terpene synthase, metal-binding domain "; GO:0009899 NbC24565114g0001.1 protein ; (*GB) gi|356567490|ref|XP_003551952.1| (e_value=4e-27) PREDICTED: T-complex protein 1 subunit epsilon-like [Glycine max];; (*SWP) sp|O04450|TCPE_ARATH (e_value=1e-27) T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1;; (*TAIR) AT1G24510.2 (e_value=8e-29) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:8685504-8687660 REVERSE LENGTH=459;; (*ITAG) Solyc05g013990.2.1 (e_value=8e-30) genomic_reference:SL2.40ch05 gene_region:7492470-7499923 transcript_region:SL2.40ch05:7492470..7499923+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit epsilon (AHRD V1 ***- B6TSC6_MAIZE); contains Interpro domain(s) IPR012718 T-complex protein 1, epsilon subunit "; GO:0051082 NbS00015879g0006.1 protein ; (*ITAG) Solyc05g012170.1.1 (e_value=5e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:5362557-5362937 transcript_region:SL2.40ch05:5362557..5362937+ functional_description:"Unknown Protein (AHRD V1)"; NbS00012463g0006.1 protein NbS00007947g0002.1 protein NbS00052656g0002.1 protein NbS00004973g0001.1 protein ; (*GB) gi|350534654|ref|NP_001233896.1| (e_value=3e-15) trehalose-6-phosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q9LRA7|TPS9_ARATH (e_value=1e-13) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=1 SV=1;; (*TAIR) AT1G23870.1 (e_value=9e-15) | Symbols: ATTPS9, TPS9 | trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867;; (*ITAG) Solyc07g006500.2.1 (e_value=5e-18) genomic_reference:SL2.40ch07 gene_region:1301353-1304574 transcript_region:SL2.40ch07:1301353..1304574+ go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** D2REU5_ARCPA); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00004341g0003.1 protein NbS00004341g0006.1 protein NbS00007659g0003.1 protein NbS00007659g0005.1 protein NbC23411015g0001.1 protein ; (*GB) gi|296084379|emb|CBI24767.3| (e_value=7e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G31890.1 (e_value=2e-28) | Symbols: ATRAP, RAP | RAP | chr2:13557100-13559715 REVERSE LENGTH=671;; (*ITAG) Solyc12g017510.1.1 (e_value=1e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:6776593-6780152 transcript_region:SL2.40ch12:6776593..6780152+ functional_description:"Os03g0425000 protein (Fragment) (AHRD V1 ***- Q0DR24_ORYSJ); contains Interpro domain(s) IPR013584 RAP domain "; NbS00014198g0003.1 protein NbS00019031g0006.1 protein NbS00019031g0009.1 protein NbS00003471g0203.1 protein NbS00021141g0002.1 protein NbS00017215g0003.1 protein NbS00017215g0005.1 protein NbS00008550g0003.1 protein NbS00020877g0002.1 protein NbS00014104g0005.1 protein NbS00014104g0105.1 protein NbS00006121g0013.1 protein NbS00006121g0009.1 protein NbS00021749g0003.1 protein NbS00024461g0005.1 protein NbS00005087g0008.1 protein NbS00003833g0004.1 protein NbS00003833g0006.1 protein NbS00022159g0003.1 protein ; (*GB) gi|255558761|ref|XP_002520404.1| (e_value=7e-37) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q7LBC6|KDM3B_HUMAN (e_value=1e-22) Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=2;; (*TAIR) AT1G11950.1 (e_value=2e-36) | Symbols: | Transcription factor jumonji (jmjC) domain-containing protein | chr1:4034747-4038310 REVERSE LENGTH=875;; (*ITAG) Solyc02g082400.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:40668282-40677819 transcript_region:SL2.40ch02:40668282..40677819+ go_terms:GO:0032454,GO:0003700 functional_description:"Lysine-specific demethylase 3A (AHRD V1 *--* KDM3A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbC24992549g0001.1 protein ; (*GB) gi|255550411|ref|XP_002516256.1| (e_value=5e-26) beta-galactosidase, putative [Ricinus communis];; (*SWP) sp|P49676|BGAL_BRAOL (e_value=2e-18) Beta-galactosidase OS=Brassica oleracea PE=2 SV=1;; (*TAIR) AT5G20710.1 (e_value=1e-18) | Symbols: BGAL7 | beta-galactosidase 7 | chr5:7010536-7013994 FORWARD LENGTH=826;; (*ITAG) Solyc07g042220.1.1 (e_value=1e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:52608232-52612572 transcript_region:SL2.40ch07:52608232..52612572+ go_terms:GO:0004565,GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 **** B9RR68_RICCO); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0004565,GO:0005515 NbS00005209g0011.1 protein NbS00005209g0007.1 protein NbS00029281g0002.1 protein NbS00011886g0004.1 protein NbS00022073g0004.1 protein NbS00010815g0008.1 protein NbS00039003g0002.1 protein NbS00012955g0009.1 protein NbS00033541g0006.1 protein NbS00058479g0004.1 protein ; (*ITAG) Solyc12g100130.1.1 (e_value=3e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:65315883-65317211 transcript_region:SL2.40ch12:65315883..65317211+ go_terms:GO:0055085 functional_description:"Vesicular glutamate transporter (AHRD V1 **-- A8J6T9_CIOIN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00032025g0001.1 protein NbS00002728g0005.1 protein NbS00002728g0006.1 protein ; (*GB) gi|15144509|gb|AAK84476.1| (e_value=5e-32) unknown [Solanum lycopersicum];; (*TAIR) AT2G22560.1 (e_value=4e-19) | Symbols: | Kinase interacting (KIP1-like) family protein | chr2:9585892-9588838 FORWARD LENGTH=947;; (*ITAG) Solyc05g051390.2.1 (e_value=6e-36) genomic_reference:SL2.40ch05 gene_region:60828255-60831667 transcript_region:SL2.40ch05:60828255..60831667- functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00002728g0007.1 protein NbS00024174g0005.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=1e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00050957g0004.1 protein NbS00038002g0005.1 protein ; (*GB) gi|297845690|ref|XP_002890726.1| (e_value=2e-34) hypothetical protein ARALYDRAFT_472944 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|B0V2S2|DCR1B_DANRE (e_value=2e-13) 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1;; (*TAIR) AT1G27410.1 (e_value=1e-35) | Symbols: | DNA repair metallo-beta-lactamase family protein | chr1:9517226-9518743 FORWARD LENGTH=422;; (*ITAG) Solyc07g053210.2.1 (e_value=4e-41) genomic_reference:SL2.40ch07 gene_region:58983740-58986826 transcript_region:SL2.40ch07:58983740..58986826+ functional_description:"DNA cross-link repair 1B-like protein (AHRD V1 ***- Q8LQQ4_ORYSJ); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00038546g0002.1 protein NbS00007396g0003.1 protein NbS00007396g0004.1 protein ; (*GB) gi|226496095|ref|NP_001141229.1| (e_value=2e-14) uncharacterized protein LOC100273316 [Zea mays];; (*TAIR) AT5G16260.1 (e_value=1e-12) | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:5311363-5315496 FORWARD LENGTH=519;; (*ITAG) Solyc11g008700.1.1 (e_value=3e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2876416-2885934 transcript_region:SL2.40ch11:2876416..2885934- go_terms:GO:0003676,GO:0000166 functional_description:"Splicing factor U2AF-associated protein (AHRD V1 *--- C0NKB4_AJECG); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00013296g0007.1 protein NbS00037486g0003.1 protein NbS00037486g0006.1 protein NbS00008008g0008.1 protein NbS00024306g0005.1 protein ; (*GB) gi|357508247|ref|XP_003624412.1| (e_value=8e-15) Methyltransferase-like protein [Medicago truncatula];; (*TAIR) AT1G66680.1 (e_value=2e-16) | Symbols: AR401 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:24866352-24868888 REVERSE LENGTH=358;; (*ITAG) Solyc02g091190.2.1 (e_value=8e-23) genomic_reference:SL2.40ch02 gene_region:47152463-47157532 transcript_region:SL2.40ch02:47152463..47157532+ go_terms:GO:0016279 functional_description:"Methyltransferase-like protein 10 (AHRD V1 **-* B5XB96_SALSA); contains Interpro domain(s) IPR013217 Methyltransferase type 12 "; GO:0016279 NbS00027815g0003.1 protein NbS00023133g0002.1 protein NbS00014098g0009.1 protein NbS00037754g0003.1 protein NbS00037754g0005.1 protein ; (*GB) gi|302143347|emb|CBI21908.3| (e_value=9e-21) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G44150.1 (e_value=3e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17763797-17765101 REVERSE LENGTH=355;; (*ITAG) Solyc07g053560.2.1 (e_value=1e-42) genomic_reference:SL2.40ch07 gene_region:59299113-59304603 transcript_region:SL2.40ch07:59299113..59304603- functional_description:"Genomic DNA chromosome 5 P1 clone MLN1 (AHRD V1 *-*- Q9FFH4_ARATH)"; NbS00016121g0006.1 protein NbS00020699g0007.1 protein NbS00025764g0001.1 protein NbS00017786g0011.1 protein NbS00007440g0014.1 protein NbS00018470g0003.1 protein NbS00026384g0004.1 protein ; (*GB) gi|37983647|gb|AAR06293.1| (e_value=2e-55) adenylosuccinate lyase [Nicotiana tabacum];; (*SWP) sp|Q9I0K9|PUR8_PSEAE (e_value=2e-46) Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1;; (*TAIR) AT1G36280.1 (e_value=1e-45) | Symbols: | L-Aspartase-like family protein | chr1:13640600-13642908 FORWARD LENGTH=527;; (*ITAG) Solyc07g006530.2.1 (e_value=2e-57) genomic_reference:SL2.40ch07 gene_region:1326181-1332288 transcript_region:SL2.40ch07:1326181..1332288+ go_terms:GO:0005515 functional_description:"Adenylosuccinate lyase (AHRD V1 ***- Q6T7E9_TOBAC); contains Interpro domain(s) IPR004769 Adenylosuccinate lyase "; GO:0005515 NbS00013235g0006.1 protein NbS00005125g0006.1 protein NbS00005125g0008.1 protein NbS00004979g0010.1 protein NbS00030042g0005.1 protein NbS00030042g0006.1 protein NbS00030042g0009.1 protein NbS00021095g0012.1 protein NbS00021095g0014.1 protein NbS00021095g0008.1 protein NbS00021095g0009.1 protein NbS00006117g0004.1 protein NbS00005178g0003.1 protein NbS00009948g0007.1 protein ; (*GB) gi|34499879|gb|AAQ73525.1| (e_value=3e-22) timing of CAB expression 1 [Mesembryanthemum crystallinum];; (*SWP) sp|Q9LKL2|APRR1_ARATH (e_value=7e-23) Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1;; (*TAIR) AT5G61380.1 (e_value=6e-24) | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618;; (*ITAG) Solyc06g069690.2.1 (e_value=3e-24) genomic_reference:SL2.40ch06 gene_region:39793175-39798747 transcript_region:SL2.40ch06:39793175..39798747- go_terms:GO:0030528,GO:0010843 functional_description:"Pseudo response regulator (AHRD V1 **** B9N4C8_POPTR); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0030528,GO:0010843 NbS00009948g0008.1 protein ; (*ITAG) Solyc06g082380.2.1 (e_value=1e-27) genomic_reference:SL2.40ch06 gene_region:44505351-44507339 transcript_region:SL2.40ch06:44505351..44507339- functional_description:"Unknown Protein (AHRD V1)"; NbS00006507g0003.1 protein NbS00006507g0107.1 protein NbS00024650g0112.1 protein NbS00024650g0115.1 protein NbS00012167g0001.1 protein NbS00053258g0003.1 protein NbS00056897g0001.1 protein NbS00012636g0004.1 protein NbS00012636g0005.1 protein NbS00012636g0007.1 protein NbS00012636g0008.1 protein NbS00030255g0003.1 protein NbS00024774g0003.1 protein NbS00005564g0001.1 protein ; (*ITAG) Solyc04g078920.2.1 (e_value=4e-19) genomic_reference:SL2.40ch04 gene_region:61177450-61178933 transcript_region:SL2.40ch04:61177450..61178933+ go_terms:GO:0005515 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B6TQ98_MAIZE); contains Interpro domain(s) IPR016083 Sterol-binding-like "; GO:0005515 NbS00005564g0002.1 protein ; (*ITAG) Solyc04g078920.2.1 (e_value=5e-17) genomic_reference:SL2.40ch04 gene_region:61177450-61178933 transcript_region:SL2.40ch04:61177450..61178933+ go_terms:GO:0005515 functional_description:"Peroxisomal multifunctional enzyme type 2 (AHRD V1 **-- B6TQ98_MAIZE); contains Interpro domain(s) IPR016083 Sterol-binding-like "; GO:0005515 NbS00026450g0002.1 protein NbS00026450g0003.1 protein NbS00021406g0015.1 protein NbS00021406g0007.1 protein NbS00021406g0010.1 protein NbS00028445g0002.1 protein NbS00041732g0003.1 protein NbS00000247g0104.1 protein NbS00019930g0002.1 protein NbS00015537g0006.1 protein NbS00016332g0002.1 protein NbS00024083g0004.1 protein NbS00006686g0004.1 protein NbS00029314g0001.1 protein NbS00014240g0005.1 protein NbS00014240g0006.1 protein NbS00029050g0002.1 protein NbS00001344g0006.1 protein NbS00040570g0004.1 protein NbS00040570g0005.1 protein NbS00011210g0004.1 protein NbS00018811g0001.1 protein NbS00022042g0010.1 protein NbS00052435g0003.1 protein NbS00004937g0006.1 protein NbS00012538g0007.1 protein NbS00008891g0015.1 protein NbS00025934g0007.1 protein NbS00012014g0003.1 protein NbS00015495g0006.1 protein NbS00061149g0004.1 protein NbS00005538g0101.1 protein NbS00005538g0301.1 protein NbS00005371g0001.1 protein NbS00005371g0101.1 protein NbS00033362g0006.1 protein NbS00043391g0002.1 protein NbS00043391g0003.1 protein NbS00043391g0004.1 protein ; (*GB) gi|359483673|ref|XP_003632998.1| (e_value=2e-20) PREDICTED: BES1/BZR1 homolog protein 1-like [Vitis vinifera]; NbS00024532g0003.1 protein ; (*ITAG) Solyc00g304030.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00024532g0005.1 protein NbS00030584g0003.1 protein NbS00011678g0002.1 protein NbS00017949g0006.1 protein NbS00013488g0011.1 protein NbS00013488g0018.1 protein NbS00034757g0005.1 protein NbS00034757g0007.1 protein NbS00034757g0008.1 protein NbS00041616g0004.1 protein ; (*GB) gi|356529184|ref|XP_003533176.1| (e_value=4e-15) PREDICTED: uncharacterized protein LOC100777167 [Glycine max]; NbS00056402g0004.1 protein NbC25603000g0001.1 protein ; (*GB) gi|297736590|emb|CBI25461.3| (e_value=2e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=5e-31) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=4e-32) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048460.1.1 (e_value=2e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:27568152-27584660 transcript_region:SL2.40ch06:27568152..27584660+ go_terms:GO:0016887 functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 ***- A2ATQ4_MOUSE); contains Interpro domain(s) IPR002015 Proteasome/cyclosome, regulatory subunit "; GO:0016887 NbS00020359g0002.1 protein ; (*GB) gi|315937174|gb|ADU56214.1| (e_value=3e-19) gag-pol polyprotein [Solanum lycopersicum];; (*ITAG) Solyc08g060910.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:42975229-42978250 transcript_region:SL2.40ch08:42975229..42978250- go_terms:GO:0008270,GO:0006278 functional_description:"Pol polyprotein (AHRD V1 *-*- POL_BAEVM); contains Interpro domain(s) IPR000477 RNA-directed DNA polymerase (reverse transcriptase) "; GO:0008270,GO:0006278 NbS00059356g0002.1 protein NbS00029000g0001.1 protein NbS00029000g0003.1 protein NbS00029000g0004.1 protein NbS00015694g0003.1 protein NbS00017222g0011.1 protein NbS00017222g0013.1 protein NbS00017222g0007.1 protein NbS00017222g0010.1 protein NbS00007345g0005.1 protein NbS00007345g0007.1 protein NbS00007345g0009.1 protein NbS00007345g0010.1 protein NbS00038445g0011.1 protein NbS00038445g0006.1 protein NbS00025867g0011.1 protein NbS00030015g0003.1 protein NbS00008671g0004.1 protein NbS00059116g0008.1 protein NbS00021005g0015.1 protein NbS00018901g0003.1 protein NbS00018901g0004.1 protein NbS00014887g0011.1 protein NbS00014887g0008.1 protein ; (*ITAG) Solyc02g083940.2.1 (e_value=8e-16) genomic_reference:SL2.40ch02 gene_region:41756601-41762285 transcript_region:SL2.40ch02:41756601..41762285+ go_terms:GO:0042800 functional_description:"WD repeat protein-like (AHRD V1 **-- Q8RXD8_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0042800 NbS00014887g0009.1 protein ; (*ITAG) Solyc06g008840.2.1 (e_value=3e-30) genomic_reference:SL2.40ch06 gene_region:2790006-2794520 transcript_region:SL2.40ch06:2790006..2794520+ go_terms:GO:0005622 functional_description:"Mediator of DNA damage checkpoint protein 1 (AHRD V1 *--- MDC1_PIG); contains Interpro domain(s) IPR001357 BRCT "; GO:0005622 NbS00027955g0005.1 protein NbS00048537g0015.1 protein NbS00001678g0004.1 protein NbS00041987g0002.1 protein ; (*GB) gi|359489267|ref|XP_002274502.2| (e_value=4e-13) PREDICTED: squamosa promoter-binding-like protein 7-like [Vitis vinifera]; NbS00053308g0001.1 protein NbS00016419g0005.1 protein ; (*ITAG) Solyc10g044740.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:23139489-23149227 transcript_region:SL2.40ch10:23139489..23149227+ go_terms:GO:0006508 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LT22_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0006508 NbS00016419g0007.1 protein NbS00002238g0006.1 protein NbS00024900g0003.1 protein ; (*GB) gi|225455284|ref|XP_002271615.1| (e_value=1e-15) PREDICTED: uncharacterized protein LOC100264007 [Vitis vinifera];; (*TAIR) AT5G53540.1 (e_value=2e-14) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403;; (*ITAG) Solyc06g053160.2.1 (e_value=1e-18) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00057216g0002.1 protein ; (*ITAG) Solyc12g035300.1.1 (e_value=2e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:24234129-24238443 transcript_region:SL2.40ch12:24234129..24238443- functional_description:"Unknown Protein (AHRD V1)"; NbS00056806g0007.1 protein NbC24190676g0001.1 protein ; (*GB) gi|147774530|emb|CAN65544.1| (e_value=3e-29) hypothetical protein VITISV_018576 [Vitis vinifera];; (*SWP) sp|Q9C9I3|PP115_ARATH (e_value=1e-20) Pentatricopeptide repeat-containing protein At1g71460, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A3 PE=2 SV=1;; (*TAIR) AT1G71460.1 (e_value=1e-21) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:26928247-26930316 REVERSE LENGTH=689;; (*ITAG) Solyc07g052590.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:58387932-58389956 transcript_region:SL2.40ch07:58387932..58389956- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KYV9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00003015g0004.1 protein NbS00003015g0005.1 protein NbS00035047g0001.1 protein NbS00019639g0005.1 protein NbS00019639g0007.1 protein NbS00019639g0009.1 protein NbS00012711g0111.1 protein NbS00012711g0112.1 protein NbS00012711g0108.1 protein NbS00005085g0008.1 protein NbS00005085g0009.1 protein NbS00018373g0001.1 protein NbS00028844g0002.1 protein NbS00015297g0001.1 protein NbS00015297g0002.1 protein NbS00002375g0001.1 protein ; (*GB) gi|12585428|sp|O82702.1|VATG1_TOBAC (e_value=4e-15) RecName: Full=V-type proton ATPase subunit G 1; Short=V-ATPase subunit G 1; AltName: Full=Vacuolar proton pump subunit G 1;; (*SWP) sp|O82702|VATG1_TOBAC (e_value=1e-16) V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1;; (*ITAG) Solyc04g049330.2.1 (e_value=5e-14) genomic_reference:SL2.40ch04 gene_region:40646720-40649557 transcript_region:SL2.40ch04:40646720..40649557+ go_terms:GO:0046933 functional_description:"V-type proton ATPase subunit G 1 (AHRD V1 ***- VATG1_TOBAC); contains Interpro domain(s) IPR005124 Vacuolar (H+)-ATPase G subunit "; GO:0046933 NbS00020736g0002.1 protein NbS00002874g0013.1 protein ; (*GB) gi|356513910|ref|XP_003525651.1| (e_value=0.0) PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=9e-16) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=0.0) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00002874g0007.1 protein NbS00002874g0010.1 protein ; (*GB) gi|225445342|ref|XP_002281542.1| (e_value=3e-133) PREDICTED: dnaJ homolog subfamily C member 13-like [Vitis vinifera];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=1e-11) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=3e-118) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021890.2.1 (e_value=5e-169) genomic_reference:SL2.40ch08 gene_region:10181970-10188023 transcript_region:SL2.40ch08:10181970..10188023+ go_terms:GO:0055114 functional_description:"DnaJ homolog subfamily C member 13 (AHRD V1 **-- DJC13_HUMAN)"; GO:0055114 NbS00010081g0013.1 protein NbS00010081g0017.1 protein NbS00034968g0007.1 protein ; (*GB) gi|225433446|ref|XP_002285679.1| (e_value=2e-28) PREDICTED: probable DNA primase large subunit [Vitis vinifera];; (*SWP) sp|Q84WJ2|PRI2_ARATH (e_value=1e-25) Probable DNA primase large subunit OS=Arabidopsis thaliana GN=At1g67320 PE=2 SV=2;; (*TAIR) AT1G67320.1 (e_value=9e-27) | Symbols: | DNA primase, large subunit family | chr1:25205520-25208966 REVERSE LENGTH=449;; (*ITAG) Solyc04g045530.2.1 (e_value=7e-32) genomic_reference:SL2.40ch04 gene_region:32864100-32873431 transcript_region:SL2.40ch04:32864100..32873431+ go_terms:GO:0003896 functional_description:"DNA primase large subunit (AHRD V1 **** B5X2T9_SALSA); contains Interpro domain(s) IPR016558 DNA primase, large subunit, eukaryotic "; GO:0003896 NbC25677626g0003.1 protein ; (*GB) gi|308550948|gb|ADO34788.1| (e_value=3e-20) beta-galactosidase STBG3 [Solanum lycopersicum];; (*SWP) sp|P48980|BGAL_SOLLC (e_value=4e-20) Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1;; (*ITAG) Solyc03g121540.2.1 (e_value=5e-23) genomic_reference:SL2.40ch03 gene_region:63687281-63693179 transcript_region:SL2.40ch03:63687281..63693179+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- Q9ZP11_SOLLC); contains Interpro domain(s) IPR019801 Glycoside hydrolase, family 35, conserved site IPR001944 Glycoside hydrolase, family 35 IPR000922 D-galactoside/L-rhamnose binding SUEL lectin "; GO:0005515 NbS00041901g0002.1 protein NbS00058738g0002.1 protein NbS00006857g0008.1 protein NbC26308818g0001.1 protein ; (*GB) gi|297737374|emb|CBI26575.3| (e_value=1e-20) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g089280.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00025639g0002.1 protein NbS00025639g0003.1 protein NbS00025639g0004.1 protein NbS00029964g0005.1 protein NbS00026408g0001.1 protein NbS00026523g0006.1 protein ; (*GB) gi|255565633|ref|XP_002523806.1| (e_value=5e-15) 60S ribosomal protein L10a, putative [Ricinus communis];; (*SWP) sp|Q8VZB9|R10A1_ARATH (e_value=4e-15) 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1;; (*TAIR) AT1G08360.1 (e_value=3e-16) | Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216;; (*ITAG) Solyc11g068420.1.1 (e_value=2e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50230558-50232833 transcript_region:SL2.40ch11:50230558..50232833+ go_terms:GO:0032183,GO:0003735 functional_description:"Ribosomal protein (AHRD V1 ***- Q6ER67_ORYSJ); contains Interpro domain(s) IPR002143 Ribosomal protein L1 "; GO:0032183,GO:0003735 NbS00041034g0001.1 protein NbS00013037g0007.1 protein NbS00013037g0010.1 protein NbS00027190g0002.1 protein NbS00041874g0003.1 protein NbS00022791g0001.1 protein ; (*ITAG) Solyc03g096800.2.1 (e_value=3e-12) genomic_reference:SL2.40ch03 gene_region:52599162-52609670 transcript_region:SL2.40ch03:52599162..52609670+ functional_description:"At5g24290-like protein (Fragment) (AHRD V1 *-*- Q45H28_ARALY); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00002528g0004.1 protein NbS00012426g0007.1 protein NbS00007755g0003.1 protein ; (*ITAG) Solyc09g090750.2.1 (e_value=3e-19) genomic_reference:SL2.40ch09 gene_region:65532507-65537885 transcript_region:SL2.40ch09:65532507..65537885+ go_terms:GO:0005515,GO:0016791 functional_description:"HAD-superfamily hydrolase subfamily IA variant 1 (AHRD V1 ***- D2R0E7_PIRSD); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0005515,GO:0016791 NbS00021067g0001.1 protein ; (*GB) gi|225441048|ref|XP_002283923.1| (e_value=2e-47) PREDICTED: F-box protein PP2-A15 [Vitis vinifera];; (*SWP) sp|Q9LF92|P2A15_ARATH (e_value=8e-44) F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1;; (*TAIR) AT3G53000.1 (e_value=6e-45) | Symbols: AtPP2-A15, PP2-A15 | phloem protein 2-A15 | chr3:19654278-19655801 FORWARD LENGTH=300;; (*ITAG) Solyc09g008820.2.1 (e_value=3e-59) genomic_reference:SL2.40ch09 gene_region:2243656-2248916 transcript_region:SL2.40ch09:2243656..2248916- go_terms:GO:0030246,GO:0005515 functional_description:"F-box protein PP2-B1 (AHRD V1 ***- PP2B1_ARATH); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0030246,GO:0005515 NbS00036715g0003.1 protein ; (*ITAG) Solyc02g091830.2.1 (e_value=5e-20) genomic_reference:SL2.40ch02 gene_region:47638491-47642246 transcript_region:SL2.40ch02:47638491..47642246+ go_terms:GO:0008865,GO:0004340 functional_description:"Hexokinase (AHRD V1 ***- Q9FVD3_CITSI); contains Interpro domain(s) IPR001312 Hexokinase "; GO:0008865,GO:0004340 NbS00007949g0002.1 protein NbS00010786g0001.1 protein NbS00046771g0001.1 protein NbS00008436g0005.1 protein ; (*GB) gi|359487804|ref|XP_002280635.2| (e_value=1e-30) PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera];; (*TAIR) AT1G55040.1 (e_value=1e-23) | Symbols: | zinc finger (Ran-binding) family protein | chr1:20534895-20538901 FORWARD LENGTH=849;; (*ITAG) Solyc01g099230.2.1 (e_value=4e-57) genomic_reference:SL2.40ch01 gene_region:81291134-81296687 transcript_region:SL2.40ch01:81291134..81296687+ go_terms:GO:0005488 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 *--- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00008436g0007.1 protein NbS00051620g0002.1 protein ; (*GB) gi|255583216|ref|XP_002532373.1| (e_value=6e-32) conserved hypothetical protein [Ricinus communis]; NbS00014032g0205.1 protein NbS00037777g0001.1 protein NbS00060616g0007.1 protein ; (*TAIR) AT1G21370.2 (e_value=7e-16) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:7484250-7485451 FORWARD LENGTH=342;; (*ITAG) Solyc06g060460.2.1 (e_value=4e-21) genomic_reference:SL2.40ch06 gene_region:34870273-34874988 transcript_region:SL2.40ch06:34870273..34874988- functional_description:"DUF218 domain protein (AHRD V1 **-- Q4WYU5_ASPFU)"; NbS00035270g0002.1 protein NbS00007868g0015.1 protein NbS00007868g0009.1 protein NbS00007868g0010.1 protein NbS00048376g0001.1 protein ; (*ITAG) Solyc08g044310.1.1 (e_value=1e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:31372735-31374398 transcript_region:SL2.40ch08:31372735..31374398- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00057643g0001.1 protein NbS00055486g0002.1 protein ; (*GB) gi|255541030|ref|XP_002511579.1| (e_value=1e-50) Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative [Ricinus communis];; (*SWP) sp|Q8L785|SYGM2_ARATH (e_value=7e-46) Glycine--tRNA ligase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLYRS-2 PE=1 SV=1;; (*TAIR) AT3G48110.1 (e_value=5e-47) | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:17763111-17770964 FORWARD LENGTH=1067;; (*ITAG) Solyc01g090200.2.1 (e_value=8e-67) genomic_reference:SL2.40ch01 gene_region:75585143-75617181 transcript_region:SL2.40ch01:75585143..75617181+ go_terms:GO:0005737 functional_description:"Glycyl-tRNA synthetase beta subunit (AHRD V1 ***- D2PQC6_KRIFD); contains Interpro domain(s) IPR002311 Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal "; GO:0005737 NbS00017101g0014.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=3e-13) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00017101g0007.1 protein NbS00056729g0006.1 protein NbS00007051g0109.1 protein NbS00039389g0002.1 protein NbS00039389g0003.1 protein NbS00042339g0002.1 protein ; (*GB) gi|224106812|ref|XP_002314293.1| (e_value=8e-53) predicted protein [Populus trichocarpa];; (*TAIR) AT5G60720.1 (e_value=3e-20) | Symbols: | Protein of unknown function, DUF547 | chr5:24418436-24422177 REVERSE LENGTH=691;; (*ITAG) Solyc11g069840.1.1 (e_value=3e-92) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51553588-51559860 transcript_region:SL2.40ch11:51553588..51559860+ functional_description:"Os03g0859900 protein (Fragment) (AHRD V1 *-*- Q0DLK3_ORYSJ); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; NbS00001453g0007.1 protein NbS00025253g0002.1 protein NbS00040379g0003.1 protein NbS00022797g0003.1 protein NbS00062062g0002.1 protein NbS00033916g0003.1 protein NbS00003611g0205.1 protein NbS00039990g0003.1 protein NbS00060122g0003.1 protein NbS00001032g0006.1 protein NbS00016225g0008.1 protein NbS00039096g0005.1 protein NbS00039096g0006.1 protein NbS00039096g0007.1 protein NbS00014808g0007.1 protein NbS00022260g0002.1 protein NbS00018282g0012.1 protein NbS00018282g0014.1 protein NbS00030444g0004.1 protein NbS00058936g0001.1 protein NbS00000232g0003.1 protein NbS00025999g0003.1 protein NbS00006685g0102.1 protein NbS00016890g0114.1 protein NbS00022823g0013.1 protein NbS00022823g0009.1 protein NbS00015928g0015.1 protein NbS00013519g0003.1 protein NbS00018016g0001.1 protein NbS00018771g0004.1 protein NbS00018771g0005.1 protein NbS00018771g0007.1 protein ; (*ITAG) Solyc06g050590.2.1 (e_value=4e-13) genomic_reference:SL2.40ch06 gene_region:29782773-29788444 transcript_region:SL2.40ch06:29782773..29788444- go_terms:GO:0005488 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-*- D3PS72_MEIRD); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005488 NbS00018771g0110.1 protein NbS00031931g0007.1 protein NbS00031248g0003.1 protein NbS00031248g0004.1 protein NbS00035319g0004.1 protein ; (*ITAG) Solyc03g120010.2.1 (e_value=6e-13) genomic_reference:SL2.40ch03 gene_region:62568976-62573796 transcript_region:SL2.40ch03:62568976..62573796- functional_description:"Eukaryotic translation initiation factor 3 subunit 2 (AHRD V1 **-- B6SSB6_MAIZE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00035319g0005.1 protein NbS00007515g0003.1 protein NbS00007515g0005.1 protein NbS00019872g0003.1 protein NbS00019872g0004.1 protein NbS00025481g0003.1 protein NbS00035024g0004.1 protein NbS00019978g0013.1 protein NbS00019978g0014.1 protein NbS00019978g0008.1 protein NbS00016767g0004.1 protein NbS00040521g0001.1 protein NbS00005888g0004.1 protein NbS00005888g0007.1 protein NbS00005888g0008.1 protein NbS00005888g0010.1 protein NbS00012567g0001.1 protein NbS00013906g0016.1 protein NbS00013906g0019.1 protein NbS00013906g0009.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=9e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT4G19160.3 (e_value=7e-13) | Symbols: | unknown protein; Has 315 Blast hits to 315 proteins in 152 species: Archae - 0; Bacteria - 250; Metazoa - 2; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr4:10477521-10479947 FORWARD LENGTH=441;; (*ITAG) Solyc08g005560.2.1 (e_value=2e-30) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00015972g0002.1 protein NbS00015242g0005.1 protein NbS00015242g0006.1 protein NbS00028672g0004.1 protein ; (*ITAG) Solyc04g015120.2.1 (e_value=7e-15) genomic_reference:SL2.40ch04 gene_region:5290310-5292227 transcript_region:SL2.40ch04:5290310..5292227+ functional_description:"U-box domain containing protein expressed (AHRD V1 *--- Q10T52_ORYSJ)"; NbS00028672g0005.1 protein NbS00002777g0008.1 protein NbS00002523g0009.1 protein NbS00002523g0114.1 protein NbS00002523g0109.1 protein NbS00027308g0003.1 protein NbS00001599g0001.1 protein NbS00003453g0204.1 protein NbS00003453g0206.1 protein NbS00003453g0208.1 protein NbS00008326g0009.1 protein NbS00040584g0001.1 protein NbS00012485g0002.1 protein NbS00012485g0003.1 protein NbS00010070g0003.1 protein NbS00010070g0004.1 protein NbS00010070g0005.1 protein NbS00031304g0001.1 protein NbS00031304g0002.1 protein NbS00015313g0002.1 protein NbS00028412g0001.1 protein ; (*GB) gi|359479965|ref|XP_003632380.1| (e_value=1e-20) PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 53-like [Vitis vinifera];; (*ITAG) Solyc01g079180.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:70787714-70790317 transcript_region:SL2.40ch01:70787714..70790317+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** D8RVT4_SELML); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00008955g0104.1 protein NbS00000335g0005.1 protein ; (*GB) gi|224081929|ref|XP_002306532.1| (e_value=4e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G23840.1 (e_value=2e-17) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:8611177-8612559 FORWARD LENGTH=420;; (*ITAG) Solyc12g087980.1.1 (e_value=1e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61917409-61922288 transcript_region:SL2.40ch12:61917409..61922288- go_terms:GO:0016747 functional_description:"Hydroxycinnamoyl CoA quinate transferase 2 (AHRD V1 **-- D8L7F0_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbC25815598g0002.1 protein ; (*GB) gi|78191396|gb|ABB29919.1| (e_value=3e-32) unknown [Solanum tuberosum];; (*TAIR) AT5G64200.2 (e_value=9e-28) | Symbols: ATSC35, SC35, At-SC35 | ortholog of human splicing factor SC35 | chr5:25681849-25683553 REVERSE LENGTH=303;; (*ITAG) Solyc04g074040.2.1 (e_value=5e-35) genomic_reference:SL2.40ch04 gene_region:57655664-57660174 transcript_region:SL2.40ch04:57655664..57660174+ go_terms:GO:0008266 functional_description:"RNA-binding protein (AHRD V1 *--* O96461_SCHJA); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0008266 NbS00009749g0007.1 protein NbS00034922g0006.1 protein NbC25171638g0001.1 protein ; (*GB) gi|133711802|gb|ABO36620.1| (e_value=3e-33) eukaryotic-type carbonic anhydrase family protein [Solanum lycopersicum];; (*SWP) sp|Q84UV8|NEC3_NICLS (e_value=1e-19) Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NEC3 PE=1 SV=1;; (*TAIR) AT4G20990.1 (e_value=3e-21) | Symbols: ATACA4, ACA4 | alpha carbonic anhydrase 4 | chr4:11219772-11221126 FORWARD LENGTH=267;; (*ITAG) Solyc10g079270.1.1 (e_value=6e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60155366-60158037 transcript_region:SL2.40ch10:60155366..60158037+ go_terms:GO:0006730 functional_description:"Carbonic anhydrase family protein (AHRD V1 ***- D7MFG3_ARALY); contains Interpro domain(s) IPR018340 Carbonic anhydrase, CAH1-like "; GO:0006730 NbS00032558g0005.1 protein NbS00059891g0003.1 protein NbS00024127g0004.1 protein NbS00023331g0008.1 protein NbS00003184g0002.1 protein NbS00043683g0002.1 protein ; (*ITAG) Solyc03g119650.2.1 (e_value=1e-14) genomic_reference:SL2.40ch03 gene_region:62258376-62277816 transcript_region:SL2.40ch03:62258376..62277816+ functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR001194 DENN "; NbS00019743g0002.1 protein NbS00019743g0004.1 protein NbS00010727g0005.1 protein NbS00010727g0006.1 protein NbS00006012g0007.1 protein NbS00016857g0009.1 protein NbS00007982g0002.1 protein NbS00000304g0004.1 protein ; (*GB) gi|225463508|ref|XP_002263911.1| (e_value=5e-17) PREDICTED: uridine kinase-like protein 4 [Vitis vinifera];; (*ITAG) Solyc07g065890.2.1 (e_value=6e-15) genomic_reference:SL2.40ch07 gene_region:64709096-64715579 transcript_region:SL2.40ch07:64709096..64715579+ go_terms:GO:0004849 functional_description:"Uridine kinase (AHRD V1 **** B9N5N9_POPTR); contains Interpro domain(s) IPR000764 Uridine kinase "; GO:0004849 NbS00000304g0006.1 protein NbS00000304g0007.1 protein NbS00020703g0005.1 protein ; (*GB) gi|225456270|ref|XP_002283518.1| (e_value=5e-43) PREDICTED: nucleolar protein 56-like [Vitis vinifera];; (*SWP) sp|O94514|NOP56_SCHPO (e_value=1e-17) Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop56 PE=2 SV=1;; (*TAIR) AT1G56110.1 (e_value=1e-39) | Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522;; (*ITAG) Solyc01g100570.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:82320225-82324027 transcript_region:SL2.40ch01:82320225..82324027- go_terms:GO:0005515,GO:0030515 functional_description:"Nucleolar protein (AHRD V1 ***- Q9LTV0_ARATH); contains Interpro domain(s) IPR002687 Pre-mRNA processing ribonucleoprotein, binding region "; GO:0005515,GO:0030515 NbC24677721g0002.1 protein ; (*GB) gi|350538279|ref|NP_001234079.1| (e_value=4e-54) phosphoenolpyruvate carboxykinase [Solanum lycopersicum];; (*SWP) sp|Q9T074|PCKA_ARATH (e_value=8e-54) Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1;; (*TAIR) AT4G37870.1 (e_value=6e-55) | Symbols: PCK1, PEPCK | phosphoenolpyruvate carboxykinase 1 | chr4:17802974-17806332 REVERSE LENGTH=671;; (*ITAG) Solyc04g076880.2.1 (e_value=7e-58) genomic_reference:SL2.40ch04 gene_region:59409918-59415730 transcript_region:SL2.40ch04:59409918..59415730+ go_terms:GO:0004612,GO:0042802 functional_description:"Phosphoenolpyruvate carboxykinase (AHRD V1 **** Q8W505_SOLLC); contains Interpro domain(s) IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising "; GO:0004612,GO:0042802 NbS00013675g0006.1 protein NbS00040506g0002.1 protein NbS00040506g0004.1 protein ; (*GB) gi|217074466|gb|ACJ85593.1| (e_value=5e-30) unknown [Medicago truncatula];; (*TAIR) AT5G15890.1 (e_value=7e-30) | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 | chr5:5187687-5189348 REVERSE LENGTH=526;; (*ITAG) Solyc02g065610.2.1 (e_value=6e-31) genomic_reference:SL2.40ch02 gene_region:31352956-31357159 transcript_region:SL2.40ch02:31352956..31357159- functional_description:"Leaf senescence protein-like (AHRD V1 ***- Q8RV74_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00047522g0007.1 protein NbS00003700g0004.1 protein NbS00008735g0007.1 protein NbS00026726g0017.1 protein NbS00002061g0003.1 protein ; (*GB) gi|48210049|gb|AAT40548.1| (e_value=5e-18) Putative vicilin, identical [Solanum demissum];; (*ITAG) Solyc11g072380.1.1 (e_value=7e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52644546-52647817 transcript_region:SL2.40ch11:52644546..52647817- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR011051 Cupin, RmlC-type "; GO:0045735 NbS00002061g0006.1 protein ; (*ITAG) Solyc09g091110.2.1 (e_value=2e-22) genomic_reference:SL2.40ch09 gene_region:65811942-65813198 transcript_region:SL2.40ch09:65811942..65813198- functional_description:"Unknown Protein (AHRD V1)"; NbS00024550g0013.1 protein NbS00043886g0006.1 protein NbS00041702g0004.1 protein NbS00041702g0007.1 protein NbS00000774g0003.1 protein NbS00000774g0005.1 protein NbS00021720g0001.1 protein ; (*GB) gi|356527300|ref|XP_003532249.1| (e_value=5e-19) PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Glycine max];; (*TAIR) AT3G24200.2 (e_value=5e-12) | Symbols: | FAD/NAD(P)-binding oxidoreductase family protein | chr3:8748095-8751166 REVERSE LENGTH=507;; (*ITAG) Solyc09g091570.2.1 (e_value=2e-48) genomic_reference:SL2.40ch09 gene_region:66169902-66176704 transcript_region:SL2.40ch09:66169902..66176704+ go_terms:GO:0042802,GO:0016491 functional_description:"Ubiquinone biosynthesis hydroxylase UbiH/UbiF/VisC/COQ6 family (AHRD V1 ***- D8KAW7_9GAMM); contains Interpro domain(s) IPR000689 Ubiquinone biosynthesis monooxygenase, COQ6-type "; GO:0042802,GO:0016491 NbS00008779g0003.1 protein NbS00020447g0006.1 protein NbS00004696g0003.1 protein NbS00036856g0008.1 protein NbS00017008g0006.1 protein NbS00053470g0006.1 protein NbS00060422g0002.1 protein NbS00010956g0006.1 protein NbS00001369g0003.1 protein NbS00016870g0001.1 protein ; (*ITAG) Solyc11g007720.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1946450-1963262 transcript_region:SL2.40ch11:1946450..1963262- go_terms:GO:0008152,GO:0045254 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A4TXZ0_9PROT); contains Interpro domain(s) IPR006257 Dihydrolipoamide acetyltransferase, long form "; GO:0008152,GO:0045254 NbS00018851g0003.1 protein NbS00006553g0002.1 protein NbS00030689g0005.1 protein ; (*ITAG) Solyc09g005840.1.1 (e_value=8e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:585410-587320 transcript_region:SL2.40ch09:585410..587320- go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_ASHGO); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00013053g0005.1 protein NbS00011373g0004.1 protein NbS00011457g0005.1 protein NbS00007697g0008.1 protein NbS00029524g0003.1 protein NbS00021280g0001.1 protein NbS00021280g0002.1 protein ; (*GB) gi|371782085|emb|CCE46056.1| (e_value=2e-58) 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase [Nicotiana tabacum];; (*TAIR) AT5G22620.3 (e_value=8e-28) | Symbols: | phosphoglycerate/bisphosphoglycerate mutase family protein | chr5:7517731-7520223 REVERSE LENGTH=460;; (*ITAG) Solyc06g074510.2.1 (e_value=2e-48) genomic_reference:SL2.40ch06 gene_region:42490467-42495114 transcript_region:SL2.40ch06:42490467..42495114- go_terms:GO:0008152 functional_description:"2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 (AHRD V1 *-*- GPMA2_GLOVI); contains Interpro domain(s) IPR013078 Phosphoglycerate mutase "; GO:0008152 NbC25814693g0002.1 protein ; (*GB) gi|37983539|gb|AAR06289.1| (e_value=3e-106) 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum];; (*SWP) sp|P52418|PUR1_SOYBN (e_value=1e-55) Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1;; (*TAIR) AT4G34740.1 (e_value=4e-62) | Symbols: ATASE2, CIA1, ATPURF2, ASE2 | GLN phosphoribosyl pyrophosphate amidotransferase 2 | chr4:16574894-16576579 REVERSE LENGTH=561;; (*ITAG) Solyc01g110520.2.1 (e_value=7e-88) genomic_reference:SL2.40ch01 gene_region:88954731-88956779 transcript_region:SL2.40ch01:88954731..88956779- go_terms:GO:0004044 functional_description:"Glucosamine--fructose-6-phosphate aminotransferase (AHRD V1 *-*- GLMS_METKA); contains Interpro domain(s) IPR005854 Amidophosphoribosyl transferase "; GO:0004044 NbS00019096g0011.1 protein ; (*GB) gi|255584255|ref|XP_002532865.1| (e_value=5e-37) protein kinase atn1, putative [Ricinus communis];; (*TAIR) AT5G01850.1 (e_value=6e-28) | Symbols: | Protein kinase superfamily protein | chr5:332829-334180 FORWARD LENGTH=333; NbS00019096g0007.1 protein NbS00022869g0005.1 protein NbS00038671g0004.1 protein NbS00005280g0014.1 protein ; (*ITAG) Solyc11g008060.1.1 (e_value=1e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:2264629-2267114 transcript_region:SL2.40ch11:2264629..2267114- go_terms:GO:0005975 functional_description:"Pullulanase type I (AHRD V1 *-*- B1B8Z3_CLOBO); contains Interpro domain(s) IPR004193 Glycoside hydrolase, family 13, N-terminal "; GO:0005975 NbS00005280g0021.1 protein NbS00005280g0008.1 protein NbS00044842g0002.1 protein NbS00001016g0002.1 protein ; (*GB) gi|350536595|ref|NP_001234766.1| (e_value=8e-41) caryophyllene/alpha-humulene synthase [Solanum lycopersicum];; (*SWP) sp|Q9FQ27|TPSGB_SOLHA (e_value=1e-40) (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1;; (*TAIR) AT3G14520.1 (e_value=1e-19) | Symbols: | Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr3:4875868-4878243 REVERSE LENGTH=605;; (*ITAG) Solyc06g059930.2.1 (e_value=1e-43) genomic_reference:SL2.40ch06 gene_region:34213417-34254456 transcript_region:SL2.40ch06:34213417..34254456+ functional_description:"Sesquiterpene synthase 1 (AHRD V1 ***- Q9FQ27_SOLHA)"; NbS00001016g0102.1 protein NbS00001016g0104.1 protein NbS00023444g0012.1 protein NbS00023444g0005.1 protein ; (*ITAG) Solyc04g039640.2.1 (e_value=4e-12) genomic_reference:SL2.40ch04 gene_region:29688626-29703749 transcript_region:SL2.40ch04:29688626..29703749+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023444g0008.1 protein NbS00005847g0002.1 protein NbC23514059g0001.1 protein ; (*GB) gi|242073562|ref|XP_002446717.1| (e_value=1e-23) hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor];; (*SWP) sp|Q6BI69|RPC1_DEBHA (e_value=3e-20) DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPC1 PE=3 SV=2;; (*TAIR) AT5G60040.2 (e_value=6e-22) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=7e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00020790g0007.1 protein NbS00006641g0001.1 protein NbS00007511g0013.1 protein NbS00007511g0014.1 protein NbS00007511g0016.1 protein NbS00007511g0006.1 protein NbS00007511g0009.1 protein NbS00010957g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-38) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=7e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00009329g0002.1 protein NbS00002662g0103.1 protein NbS00002662g0104.1 protein NbS00034641g0007.1 protein NbS00033329g0003.1 protein NbS00037660g0103.1 protein NbS00058732g0001.1 protein NbS00008811g0005.1 protein NbS00013484g0003.1 protein NbS00056244g0002.1 protein NbS00054489g0001.1 protein NbS00024711g0015.1 protein ; (*ITAG) Solyc11g071950.1.1 (e_value=6e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52350625-52356685 transcript_region:SL2.40ch11:52350625..52356685+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024711g0017.1 protein NbS00024711g0010.1 protein NbS00028650g0005.1 protein NbS00004287g0003.1 protein NbS00013387g0008.1 protein NbS00025414g0001.1 protein NbS00002670g0012.1 protein NbS00002670g0013.1 protein NbS00002670g0014.1 protein NbS00002670g0016.1 protein NbS00008785g0008.1 protein NbS00012537g0005.1 protein NbS00013483g0107.1 protein NbS00019083g0003.1 protein NbS00009495g0107.1 protein NbS00043224g0004.1 protein NbS00011400g0008.1 protein NbS00011400g0010.1 protein NbS00035772g0002.1 protein NbS00032274g0002.1 protein NbS00014136g0003.1 protein ; (*ITAG) Solyc09g031650.2.1 (e_value=4e-13) genomic_reference:SL2.40ch09 gene_region:23381791-23386705 transcript_region:SL2.40ch09:23381791..23386705- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q1RQ04_CIOIN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00020009g0004.1 protein NbS00018395g0003.1 protein NbC23408311g0001.1 protein ; (*GB) gi|297829362|ref|XP_002882563.1| (e_value=3e-30) phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SFB8|PI5K6_ARATH (e_value=1e-30) Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1;; (*TAIR) AT3G07960.1 (e_value=8e-32) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:2535274-2538090 FORWARD LENGTH=715;; (*ITAG) Solyc10g078460.1.1 (e_value=2e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59606606-59609733 transcript_region:SL2.40ch10:59606606..59609733+ go_terms:GO:0016308,GO:0046488 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7LGK2_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0016308,GO:0046488 NbS00019291g0003.1 protein NbS00019291g0004.1 protein NbS00024745g0007.1 protein NbS00001871g0004.1 protein ; (*ITAG) Solyc05g045670.2.1 (e_value=9e-17) genomic_reference:SL2.40ch05 gene_region:56569409-56572667 transcript_region:SL2.40ch05:56569409..56572667+ go_terms:GO:0008524 functional_description:"Glucose-6-phosphate/phosphate translocator 2 (AHRD V1 **** Q84Y17_SOLTU); contains Interpro domain(s) IPR004696 Tpt phosphate/phosphoenolpyruvate translocator "; GO:0008524 NbS00043154g0003.1 protein ; (*GB) gi|6671194|gb|AAF23127.1|AF198389_1 (e_value=3e-17) cystatin [Solanum lycopersicum];; (*ITAG) Solyc01g009020.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:3021936-3024369 transcript_region:SL2.40ch01:3021936..3024369- go_terms:GO:0004869,GO:0050897 functional_description:"Cysteine proteinase inhibitor (AHRD V1 **** Q2VY67_9ERIC); contains Interpro domain(s) IPR000010 Proteinase inhibitor I25, cystatin "; GO:0004869,GO:0050897 NbS00024234g0012.1 protein ; (*GB) gi|224124824|ref|XP_002319431.1| (e_value=2e-30) predicted protein [Populus trichocarpa]; NbS00024234g0009.1 protein NbS00015335g0005.1 protein NbS00049244g0010.1 protein NbS00056359g0002.1 protein NbS00005966g0004.1 protein NbS00012774g0103.1 protein NbS00012774g0104.1 protein NbS00034793g0001.1 protein NbS00048759g0002.1 protein NbS00029027g0002.1 protein NbS00007409g0002.1 protein NbS00004208g0003.1 protein NbS00010658g0003.1 protein NbS00010658g0104.1 protein NbS00010658g0105.1 protein NbS00005764g0002.1 protein NbS00005764g0204.1 protein NbS00005764g0205.1 protein NbS00005764g0206.1 protein NbC24318573g0001.1 protein ; (*GB) gi|357507349|ref|XP_003623963.1| (e_value=3e-28) Mediator of RNA polymerase II transcription subunit [Medicago truncatula];; (*TAIR) AT4G00450.1 (e_value=1e-28) | Symbols: CRP, CCT | RNA polymerase II transcription mediators | chr4:202425-210666 FORWARD LENGTH=2253;; (*ITAG) Solyc01g094620.2.1 (e_value=4e-46) genomic_reference:SL2.40ch01 gene_region:77794871-77810348 transcript_region:SL2.40ch01:77794871..77810348- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 12 (AHRD V1 *--- B2G3S6_ZYGRO); contains Interpro domain(s) IPR019035 Mediator complex, subunit Med12 "; GO:0016592 NbS00046713g0001.1 protein NbS00021130g0005.1 protein NbS00021408g0011.1 protein NbS00021408g0012.1 protein NbS00021408g0016.1 protein NbS00029968g0011.1 protein NbS00029968g0008.1 protein NbC24295021g0001.1 protein ; (*GB) gi|334185627|ref|NP_001189975.1| (e_value=7e-61) protein CHUP1 [Arabidopsis thaliana];; (*SWP) sp|Q9LI74|CHUP1_ARATH (e_value=5e-62) Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1;; (*TAIR) AT3G25690.3 (e_value=2e-63) | Symbols: CHUP1 | Hydroxyproline-rich glycoprotein family protein | chr3:9354061-9357757 FORWARD LENGTH=863;; (*ITAG) Solyc05g009930.2.1 (e_value=8e-68) genomic_reference:SL2.40ch05 gene_region:4150239-4155584 transcript_region:SL2.40ch05:4150239..4155584- functional_description:"Chloroplast unusual positioning 1A (AHRD V1 *--- B3IYT7_ADICA)"; NbS00049465g0007.1 protein NbS00014630g0005.1 protein NbS00030829g0005.1 protein NbS00004435g0003.1 protein NbS00004435g0004.1 protein NbS00005703g0005.1 protein NbS00027275g0002.1 protein NbS00016836g0008.1 protein NbS00015562g0002.1 protein ; (*GB) gi|224127136|ref|XP_002329409.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LR67|PPR9_ARATH (e_value=1e-23) Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1;; (*TAIR) AT1G03560.1 (e_value=1e-24) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:890428-892410 REVERSE LENGTH=660;; (*ITAG) Solyc10g008510.1.1 (e_value=5e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:2625491-2627626 transcript_region:SL2.40ch10:2625491..2627626+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KCG2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00004095g0008.1 protein NbS00027831g0001.1 protein NbS00014022g0003.1 protein NbS00007993g0005.1 protein NbS00007993g0308.1 protein NbS00056647g0003.1 protein NbS00056647g0004.1 protein NbS00000701g0002.1 protein NbS00000701g0003.1 protein NbC23871675g0001.1 protein ; (*GB) gi|224121704|ref|XP_002330632.1| (e_value=1e-40) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9ZT82|CALSC_ARATH (e_value=7e-38) Callose synthase 12 OS=Arabidopsis thaliana GN=CALS12 PE=1 SV=1;; (*TAIR) AT4G03550.1 (e_value=5e-39) | Symbols: ATGSL05, GSL05, ATGSL5, PMR4, GSL5 | glucan synthase-like 5 | chr4:1573513-1579195 FORWARD LENGTH=1780;; (*ITAG) Solyc07g053980.2.1 (e_value=2e-50) genomic_reference:SL2.40ch07 gene_region:59711693-59718531 transcript_region:SL2.40ch07:59711693..59718531- go_terms:GO:0016757 functional_description:"Glucan synthase like 1 (AHRD V1 ***- D8R536_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00003472g0005.1 protein NbS00008488g0014.1 protein NbS00008488g0020.1 protein NbS00008488g0024.1 protein NbS00008488g0025.1 protein NbS00030290g0012.1 protein NbS00030290g0009.1 protein NbC23785971g0001.1 protein ; (*GB) gi|225457536|ref|XP_002272226.1| (e_value=1e-39) PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Vitis vinifera];; (*SWP) sp|Q8L844|PP413_ARATH (e_value=4e-38) Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1;; (*TAIR) AT5G42310.1 (e_value=3e-39) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:16915860-16918238 FORWARD LENGTH=709;; (*ITAG) Solyc08g045850.2.1 (e_value=4e-49) genomic_reference:SL2.40ch08 gene_region:36801940-36806300 transcript_region:SL2.40ch08:36801940..36806300- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MTG0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00016021g0004.1 protein NbS00041605g0002.1 protein NbS00041605g0003.1 protein ; (*ITAG) Solyc03g005730.2.1 (e_value=6e-11) genomic_reference:SL2.40ch03 gene_region:509260-517653 transcript_region:SL2.40ch03:509260..517653- go_terms:GO:0004409 functional_description:"3-isopropylmalate dehydratase large subunit 2 (AHRD V1 ***- B6U6T6_MAIZE); contains Interpro domain(s) IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic "; GO:0004409 NbS00042338g0002.1 protein NbS00003133g0011.1 protein NbS00003133g0015.1 protein NbS00003133g0018.1 protein NbS00003133g0020.1 protein NbS00044149g0004.1 protein NbS00044149g0005.1 protein NbS00007478g0012.1 protein NbS00007478g0006.1 protein NbS00007478g0007.1 protein ; (*GB) gi|13872955|dbj|BAB44060.1| (e_value=9e-20) hypothetical protein [Oryza sativa Japonica Group];; (*ITAG) Solyc06g069800.1.1 (e_value=3e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:39851933-39852693 transcript_region:SL2.40ch06:39851933..39852693- go_terms:GO:0009055 functional_description:"Unknown Protein (AHRD V1)"; GO:0009055 NbS00028335g0003.1 protein NbS00002302g0004.1 protein NbS00000507g0001.1 protein NbS00000507g0002.1 protein NbS00008496g0003.1 protein NbS00008913g0005.1 protein ; (*GB) gi|388497430|gb|AFK36781.1| (e_value=1e-47) unknown [Lotus japonicus];; (*SWP) sp|Q8RUD6|STR19_ARATH (e_value=2e-44) Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1;; (*TAIR) AT2G21045.1 (e_value=2e-45) | Symbols: | Rhodanese/Cell cycle control phosphatase superfamily protein | chr2:9027858-9028805 FORWARD LENGTH=169;; (*ITAG) Solyc02g083730.2.1 (e_value=2e-32) genomic_reference:SL2.40ch02 gene_region:41605157-41606603 transcript_region:SL2.40ch02:41605157..41606603- go_terms:GO:0004792 functional_description:"Thiosulfate sulfurtransferase rhodanese domain protein (AHRD V1 **** A5ID08_LEGPC); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792 NbS00008913g0106.1 protein NbS00008913g0107.1 protein NbS00013452g0012.1 protein ; (*GB) gi|386799292|ref|YP_006291838.1| (e_value=2e-17) orf49 gene product (mitochondrion) [Daucus carota subsp. sativus]; NbS00013452g0013.1 protein NbS00013452g0010.1 protein NbS00005549g0002.1 protein NbS00005549g0003.1 protein NbS00025772g0010.1 protein ; (*GB) gi|255547213|ref|XP_002514664.1| (e_value=0.0) activating signal cointegrator 1 complex subunit 3, helc1, putative [Ricinus communis];; (*SWP) sp|F1LPQ2|ASCC3_RAT (e_value=3e-104) Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=3 SV=1;; (*TAIR) AT5G61140.1 (e_value=0.0) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2146;; (*ITAG) Solyc06g069480.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:39617598-39646906 transcript_region:SL2.40ch06:39617598..39646906+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00005841g0002.1 protein NbS00027682g0004.1 protein ; (*GB) gi|2499497|sp|Q42961.1|PGKH_TOBAC (e_value=5e-30) RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor;; (*SWP) sp|Q42961|PGKH_TOBAC (e_value=1e-31) Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*ITAG) Solyc07g066610.2.1 (e_value=8e-25) genomic_reference:SL2.40ch07 gene_region:65209792-65212260 transcript_region:SL2.40ch07:65209792..65212260- go_terms:GO:0005524 functional_description:"Phosphoglycerate kinase (AHRD V1 ***- O81394_SOLTU); contains Interpro domain(s) IPR001576 Phosphoglycerate kinase "; GO:0005524 NbS00011627g0004.1 protein ; (*ITAG) Solyc04g076380.2.1 (e_value=2e-13) genomic_reference:SL2.40ch04 gene_region:58873950-58880708 transcript_region:SL2.40ch04:58873950..58880708- go_terms:GO:0003958 functional_description:"Cytochrome P450 NADPH-reductase (AHRD V1 **** B3RFK2_PETHY); contains Interpro domain(s) IPR015702 NADPH Cytochrome P450 Reductase "; GO:0003958 NbS00000272g0003.1 protein NbS00000272g0004.1 protein ; (*GB) gi|224123990|ref|XP_002319214.1| (e_value=6e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FQ02|XRN2_ARATH (e_value=5e-45) 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1;; (*TAIR) AT5G42540.1 (e_value=4e-46) | Symbols: XRN2, AtXRN2 | exoribonuclease 2 | chr5:17007513-17014534 FORWARD LENGTH=1012;; (*ITAG) Solyc12g089280.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00000272g0005.1 protein ; (*GB) gi|359490022|ref|XP_002275560.2| (e_value=1e-110) PREDICTED: 5'-3' exoribonuclease 4-like [Vitis vinifera];; (*SWP) sp|Q9FQ04|XRN4_ARATH (e_value=7e-73) 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1;; (*TAIR) AT1G54490.1 (e_value=5e-74) | Symbols: AIN1, EIN5, XRN4, ATXRN4 | exoribonuclease 4 | chr1:20350300-20356650 FORWARD LENGTH=947;; (*ITAG) Solyc12g089280.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62829698-62849755 transcript_region:SL2.40ch12:62829698..62849755+ go_terms:GO:0005634,GO:0008270,GO:0005622 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 ***- C4JYG7_UNCRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0005634,GO:0008270,GO:0005622 NbS00000272g0006.1 protein ; (*GB) gi|297737374|emb|CBI26575.3| (e_value=3e-129) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FQ03|XRN3_ARATH (e_value=4e-103) 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1;; (*TAIR) AT1G75660.1 (e_value=3e-104) | Symbols: XRN3, AtXRN3 | 5'-3' exoribonuclease 3 | chr1:28408289-28414825 FORWARD LENGTH=1020;; (*ITAG) Solyc04g081280.2.1 (e_value=3e-103) genomic_reference:SL2.40ch04 gene_region:62902246-62914223 transcript_region:SL2.40ch04:62902246..62914223+ go_terms:GO:0004534 functional_description:"5&apos-3&apos exoribonuclease 2 (AHRD V1 **** A5WVY7_DANRE); contains Interpro domain(s) IPR017151 5'-3' exoribonuclease 2 "; GO:0004534 NbC23552614g0001.1 protein ; (*GB) gi|147772303|emb|CAN64563.1| (e_value=9e-21) hypothetical protein VITISV_038234 [Vitis vinifera];; (*ITAG) Solyc12g056940.1.1 (e_value=9e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:48362854-48375912 transcript_region:SL2.40ch12:48362854..48375912- go_terms:GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 functional_description:"Acetyl-CoA carboxylase (AHRD V1 ***- D2CFN2_9ROSI); contains Interpro domain(s) IPR013537 Acetyl-CoA carboxylase, central region "; GO:0009374,GO:0008152,GO:0006633,GO:0005524,GO:0016874 NbS00010729g0005.1 protein NbS00010729g0007.1 protein NbS00010729g0009.1 protein NbS00025405g0002.1 protein NbS00016449g0008.1 protein NbS00011081g0003.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-30) hypothetical protein [Nicotiana tabacum]; NbS00024278g0006.1 protein ; (*GB) gi|224069212|ref|XP_002326302.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT2G34357.1 (e_value=1e-29) | Symbols: | ARM repeat superfamily protein | chr2:14499236-14505555 FORWARD LENGTH=1280;; (*ITAG) Solyc07g042380.2.1 (e_value=3e-48) genomic_reference:SL2.40ch07 gene_region:52832624-52846801 transcript_region:SL2.40ch07:52832624..52846801- go_terms:GO:0005488 functional_description:"Ribosomal RNA processing protein (AHRD V1 *--- A6ZWN4_YEAS7); contains Interpro domain(s) IPR012978 Region of unknown function, NUC173 "; GO:0005488 NbS00012440g0005.1 protein NbS00012440g0007.1 protein NbS00013466g0002.1 protein ; (*GB) gi|350535529|ref|NP_001233943.1| (e_value=9e-15) endo-1,4-beta-glucanase [Solanum lycopersicum];; (*SWP) sp|Q38890|GUN25_ARATH (e_value=1e-12) Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1;; (*TAIR) AT5G49720.1 (e_value=8e-14) | Symbols: ATGH9A1, TSD1, DEC, KOR, RSW2, IRX2, KOR1, GH9A1 | glycosyl hydrolase 9A1 | chr5:20197765-20200168 REVERSE LENGTH=621;; (*ITAG) Solyc01g102580.2.1 (e_value=2e-17) genomic_reference:SL2.40ch01 gene_region:83117822-83121772 transcript_region:SL2.40ch01:83117822..83121772- go_terms:GO:0008810 functional_description:"Endo-1 4-beta-glucanase (AHRD V1 ***- O04890_SOLLC); contains Interpro domain(s) IPR008928 Six-hairpin glycosidase-like IPR018221 Glycoside hydrolase, family 9, active site IPR001701 Glycoside hydrolase, family 9 "; GO:0008810 NbS00003838g0012.1 protein NbS00003838g0007.1 protein ; (*GB) gi|327493209|gb|AEA86311.1| (e_value=1e-30) glutathione S-transferase zeta class [Solanum nigrum];; (*SWP) sp|P57108|GSTZ_EUPES (e_value=1e-18) Glutathione S-transferase zeta class OS=Euphorbia esula PE=2 SV=1;; (*TAIR) AT2G02380.1 (e_value=2e-18) | Symbols: ATGSTZ2, GSTZ2 | glutathione S-transferase (class zeta) 2 | chr2:626878-628569 FORWARD LENGTH=223;; (*ITAG) Solyc01g102660.2.1 (e_value=6e-31) genomic_reference:SL2.40ch01 gene_region:83166396-83171573 transcript_region:SL2.40ch01:83166396..83171573+ go_terms:GO:0005737 functional_description:"Maleylacetoacetate isomerase / glutathione S-transferase (AHRD V1 ***- Q6MR10_BDEBA); contains Interpro domain(s) IPR005955 Maleylacetoacetate isomerase "; GO:0005737 NbS00002464g0005.1 protein ; (*SWP) sp|Q9SYF0|GLIP2_ARATH (e_value=5e-11) GDSL esterase/lipase 2 OS=Arabidopsis thaliana GN=GLIP2 PE=2 SV=1;; (*TAIR) AT1G53940.1 (e_value=4e-14) | Symbols: GLIP2 | GDSL-motif lipase 2 | chr1:20143279-20145780 FORWARD LENGTH=436;; (*ITAG) Solyc06g065010.2.1 (e_value=9e-18) genomic_reference:SL2.40ch06 gene_region:36927810-36930134 transcript_region:SL2.40ch06:36927810..36930134+ go_terms:GO:0016298 functional_description:"GDSL esterase/lipase 1 (AHRD V1 **** GLIP1_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0016298 NbS00015306g0002.1 protein NbS00050219g0001.1 protein NbS00002979g0003.1 protein NbS00002979g0004.1 protein NbS00002979g0005.1 protein NbS00037517g0004.1 protein ; (*GB) gi|18076679|emb|CAC84774.1| (e_value=2e-22) P70 protein [Nicotiana tabacum];; (*TAIR) AT3G53350.3 (e_value=2e-11) | Symbols: RIP4 | ROP interactive partner 4 | chr3:19780190-19781555 REVERSE LENGTH=394;; (*ITAG) Solyc10g086030.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64334549-64337457 transcript_region:SL2.40ch10:64334549..64337457- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00037517g0005.1 protein NbS00032991g0015.1 protein NbS00032991g0010.1 protein NbS00007104g0001.1 protein NbS00017022g0004.1 protein NbS00002792g0003.1 protein ; (*GB) gi|28558782|gb|AAO45753.1| (e_value=2e-25) RING/c3HC4/PHD zinc finger-like protein [Cucumis melo subsp. melo];; (*SWP) sp|Q8RXX9|ATL6_ARATH (e_value=2e-24) E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2;; (*TAIR) AT3G05200.1 (e_value=1e-25) | Symbols: ATL6 | RING/U-box superfamily protein | chr3:1477377-1478573 FORWARD LENGTH=398;; (*ITAG) Solyc03g112340.1.1 (e_value=4e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56820717-56821913 transcript_region:SL2.40ch03:56820717..56821913+ go_terms:GO:0004842 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0004842 NbS00029849g0003.1 protein NbS00029849g0005.1 protein ; (*GB) gi|359492751|ref|XP_002284446.2| (e_value=6e-27) PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Vitis vinifera];; (*TAIR) AT1G44835.1 (e_value=2e-19) | Symbols: | YbaK/aminoacyl-tRNA synthetase-associated domain | chr1:16939909-16942337 FORWARD LENGTH=307;; (*ITAG) Solyc06g060420.2.1 (e_value=8e-51) genomic_reference:SL2.40ch06 gene_region:34817950-34824473 transcript_region:SL2.40ch06:34817950..34824473- functional_description:"YbaK/prolyl-tRNA synthetase (AHRD V1 *-*- D0P7L2_BRUSU); contains Interpro domain(s) IPR007214 YbaK/aminoacyl-tRNA synthetase associated region "; NbS00006278g0004.1 protein NbS00003481g0007.1 protein NbS00026166g0002.1 protein NbS00040283g0005.1 protein NbS00011663g0106.1 protein NbS00011663g0309.1 protein NbS00026081g0003.1 protein NbS00026081g0005.1 protein NbS00035331g0004.1 protein ; (*GB) gi|255565697|ref|XP_002523838.1| (e_value=9e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G22350.1 (e_value=7e-27) | Symbols: ELM1 | Protein of unknown function (DUF1022) | chr5:7397762-7400746 REVERSE LENGTH=427;; (*ITAG) Solyc11g068650.1.1 (e_value=1e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50371286-50380603 transcript_region:SL2.40ch11:50371286..50380603+ functional_description:"Predicted nucleoside-diphosphate-sugar epimerase (AHRD V1 *--- B4RH55_PHEZH); contains Interpro domain(s) IPR009367 Protein of unknown function DUF1022 "; NbS00035331g0006.1 protein NbS00035331g0007.1 protein NbS00035331g0009.1 protein NbS00035331g0010.1 protein NbS00019149g0002.1 protein ; (*ITAG) Solyc02g005360.1.1 (e_value=8e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:2313807-2315810 transcript_region:SL2.40ch02:2313807..2315810- functional_description:"Unknown Protein (AHRD V1)"; NbS00004933g0011.1 protein NbS00027155g0005.1 protein NbS00016452g0006.1 protein NbS00016452g0010.1 protein NbS00035477g0004.1 protein NbS00022205g0002.1 protein NbS00032066g0004.1 protein NbS00029792g0010.1 protein NbS00061932g0001.1 protein NbS00036188g0005.1 protein NbS00049545g0004.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=2e-15) conserved hypothetical protein [Ricinus communis]; NbS00024674g0003.1 protein NbS00000334g0001.1 protein NbS00010445g0003.1 protein NbS00045560g0002.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=6e-25) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00034180g0005.1 protein NbS00022818g0001.1 protein NbS00021355g0003.1 protein NbS00015149g0009.1 protein NbS00022737g0001.1 protein NbS00022737g0002.1 protein NbS00034448g0008.1 protein NbS00001411g0002.1 protein ; (*ITAG) Solyc06g050590.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:29782773-29788444 transcript_region:SL2.40ch06:29782773..29788444- go_terms:GO:0005488 functional_description:"Acetyl-CoA carboxylase biotin carboxyl carrier protein (AHRD V1 *-*- D3PS72_MEIRD); contains Interpro domain(s) IPR011053 Single hybrid motif "; GO:0005488 NbS00001411g0105.1 protein NbS00029196g0005.1 protein ; (*GB) gi|109631194|gb|ABG35773.1| (e_value=2e-25) SRR391 [Striga asiatica];; (*SWP) sp|O49397|ARR10_ARATH (e_value=2e-23) Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1;; (*TAIR) AT4G31920.1 (e_value=1e-24) | Symbols: ARR10, RR10 | response regulator 10 | chr4:15444290-15446766 REVERSE LENGTH=552;; (*ITAG) Solyc07g005140.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:162324-167069 transcript_region:SL2.40ch07:162324..167069+ go_terms:GO:0003700 functional_description:"Response regulator 9 (AHRD V1 ***- Q94LW1_MAIZE); contains Interpro domain(s) IPR017053 Response regulator, plant B-type "; GO:0003700 NbS00029497g0003.1 protein NbS00029497g0004.1 protein ; (*GB) gi|357128973|ref|XP_003566143.1| (e_value=2e-21) PREDICTED: CBL-interacting protein kinase 28-like [Brachypodium distachyon];; (*SWP) sp|Q9LWM4|CIPK5_ORYSJ (e_value=5e-19) CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica GN=CIPK5 PE=2 SV=1;; (*TAIR) AT5G45820.1 (e_value=8e-20) | Symbols: CIPK20, SnRK3.6, PKS18 | CBL-interacting protein kinase 20 | chr5:18587081-18588400 REVERSE LENGTH=439;; (*ITAG) Solyc06g007430.1.1 (e_value=9e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1447079-1448515 transcript_region:SL2.40ch06:1447079..1448515+ go_terms:GO:0004711 functional_description:"CBL-interacting protein kinase 11 (AHRD V1 **** C4P7W0_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00033750g0003.1 protein NbS00014075g0008.1 protein NbS00013918g0011.1 protein NbS00013918g0012.1 protein NbS00013918g0021.1 protein NbS00037943g0005.1 protein NbS00013155g0006.1 protein ; (*SWP) sp|Q9SP32|DCL1_ARATH (e_value=3e-11) Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2;; (*TAIR) AT1G01040.1 (e_value=2e-12) | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1909;; (*ITAG) Solyc10g005130.2.1 (e_value=3e-30) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00013155g0009.1 protein NbS00013155g0010.1 protein NbS00006901g0004.1 protein NbS00028993g0005.1 protein NbS00028993g0010.1 protein NbS00019316g0004.1 protein NbS00019316g0006.1 protein ; (*GB) gi|225424542|ref|XP_002285300.1| (e_value=2e-26) PREDICTED: uncharacterized protein LOC100267955 [Vitis vinifera];; (*TAIR) AT1G09290.1 (e_value=8e-24) | Symbols: | unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:3001682-3003715 REVERSE LENGTH=348;; (*ITAG) Solyc01g020240.2.1 (e_value=4e-56) genomic_reference:SL2.40ch01 gene_region:27975078-27985354 transcript_region:SL2.40ch01:27975078..27985354+ functional_description:"T31J12.1 protein (Fragment) (AHRD V1 ***- Q9ZPZ6_ARATH)"; NbS00019316g0202.1 protein NbS00002122g0002.1 protein NbS00002122g0003.1 protein NbS00005358g0003.1 protein NbS00049585g0004.1 protein NbS00022943g0002.1 protein NbS00008629g0005.1 protein NbS00013872g0003.1 protein NbS00001486g0011.1 protein NbS00021201g0004.1 protein NbS00007191g0006.1 protein NbS00021405g0007.1 protein NbS00027893g0003.1 protein NbS00027893g0004.1 protein ; (*GB) gi|125596331|gb|EAZ36111.1| (e_value=4e-29) hypothetical protein OsJ_20423 [Oryza sativa Japonica Group];; (*SWP) sp|P24384|PRP22_YEAST (e_value=3e-17) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP22 PE=1 SV=1;; (*TAIR) AT1G26370.1 (e_value=1e-24) | Symbols: | RNA helicase family protein | chr1:9122030-9125368 REVERSE LENGTH=717;; (*ITAG) Solyc09g008120.2.1 (e_value=3e-34) genomic_reference:SL2.40ch09 gene_region:1591043-1599834 transcript_region:SL2.40ch09:1591043..1599834+ go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00004652g0006.1 protein NbS00004652g0007.1 protein NbS00004652g0114.1 protein NbS00004652g0115.1 protein NbS00004652g0119.1 protein NbS00004652g0120.1 protein NbS00018445g0001.1 protein NbS00017777g0005.1 protein NbS00017777g0008.1 protein NbS00035701g0002.1 protein ; (*ITAG) Solyc10g081310.1.1 (e_value=3e-15) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61732156-61735368 transcript_region:SL2.40ch10:61732156..61735368- go_terms:GO:0003824 functional_description:"Histidine triad (HIT) protein (AHRD V1 ***- Q2MGQ9_MEDTR); contains Interpro domain(s) IPR001310 Histidine triad (HIT) protein "; GO:0003824 NbS00004077g0009.1 protein ; (*ITAG) Solyc09g064790.2.1 (e_value=3e-13) genomic_reference:SL2.40ch09 gene_region:57800521-57806263 transcript_region:SL2.40ch09:57800521..57806263+ functional_description:"PAC (Fragment) (AHRD V1 **-- Q7DLY1_ARATH)"; NbS00053660g0103.1 protein NbS00010001g0001.1 protein NbS00021878g0002.1 protein NbS00007402g0002.1 protein NbS00043531g0002.1 protein NbS00032124g0001.1 protein ; (*ITAG) Solyc01g103660.2.1 (e_value=1e-18) genomic_reference:SL2.40ch01 gene_region:83970532-83977332 transcript_region:SL2.40ch01:83970532..83977332+ go_terms:GO:0003824 functional_description:"Alpha/beta hydrolase fold (AHRD V1 *--- B0KN71_PSEPG)"; GO:0003824 NbS00007748g0104.1 protein NbS00007748g0105.1 protein NbS00008439g0005.1 protein NbS00027236g0003.1 protein NbS00056063g0004.1 protein ; (*GB) gi|147834652|emb|CAN63106.1| (e_value=1e-53) hypothetical protein VITISV_000496 [Vitis vinifera];; (*SWP) sp|Q9SRS9|CHIP_ARATH (e_value=5e-47) E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1;; (*TAIR) AT3G07370.1 (e_value=4e-48) | Symbols: ATCHIP, CHIP | carboxyl terminus of HSC70-interacting protein | chr3:2358323-2360301 REVERSE LENGTH=278;; (*ITAG) Solyc06g083150.2.1 (e_value=4e-60) genomic_reference:SL2.40ch06 gene_region:44977538-44982219 transcript_region:SL2.40ch06:44977538..44982219+ go_terms:GO:0034450 functional_description:"U-box domain-containing protein (AHRD V1 **-- C6HIA6_AJECH); contains Interpro domain(s) IPR003613 U box domain "; GO:0034450 NbS00005057g0002.1 protein NbS00004266g0001.1 protein NbS00026056g0004.1 protein ; (*ITAG) Solyc04g071380.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55957071-55960926 transcript_region:SL2.40ch04:55957071..55960926+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00009764g0001.1 protein NbS00009764g0002.1 protein NbS00007562g0001.1 protein NbC24022059g0001.1 protein ; (*GB) gi|224108621|ref|XP_002314911.1| (e_value=4e-45) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAA8|PP108_ARATH (e_value=3e-39) Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1;; (*TAIR) AT1G68930.1 (e_value=2e-40) | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:25918314-25920545 FORWARD LENGTH=743;; (*ITAG) Solyc05g010620.1.1 (e_value=2e-59) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4853630-4855861 transcript_region:SL2.40ch05:4853630..4855861+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWW7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017610g0006.1 protein NbS00042523g0004.1 protein ; (*GB) gi|304304318|gb|ADM21465.1| (e_value=7e-15) alpha-dioxygenase 2 [Nicotiana attenuata];; (*ITAG) Solyc03g119060.2.1 (e_value=6e-15) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbC24489903g0001.1 protein ; (*GB) gi|225463151|ref|XP_002266966.1| (e_value=1e-70) PREDICTED: anaphase-promoting complex subunit 8 [Vitis vinifera];; (*SWP) sp|Q9STS3|CDC23_ARATH (e_value=4e-67) Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1;; (*TAIR) AT3G48150.1 (e_value=3e-68) | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579;; (*ITAG) Solyc03g113740.2.1 (e_value=7e-74) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00007716g0009.1 protein NbS00009870g0006.1 protein NbS00023707g0006.1 protein NbS00045454g0002.1 protein NbS00003630g0106.1 protein NbS00003630g0107.1 protein NbS00003630g0110.1 protein NbS00058693g0003.1 protein NbS00058693g0005.1 protein NbS00003316g0003.1 protein NbS00029146g0002.1 protein NbS00001622g0003.1 protein NbC24138440g0002.1 protein ; (*GB) gi|225459601|ref|XP_002285869.1| (e_value=3e-28) PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=4e-20) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=9e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00026833g0002.1 protein NbS00000957g0003.1 protein NbS00007875g0002.1 protein NbS00027103g0007.1 protein NbS00011877g0007.1 protein ; (*GB) gi|145839433|gb|ABP96799.1| (e_value=3e-30) purple acid phosphatase [Nicotiana tabacum];; (*SWP) sp|Q9SFU3|PPA15_ARATH (e_value=7e-16) Purple acid phosphatase 15 OS=Arabidopsis thaliana GN=PAP15 PE=1 SV=1;; (*TAIR) AT3G07130.1 (e_value=5e-17) | Symbols: ATPAP15, PAP15 | purple acid phosphatase 15 | chr3:2255763-2257981 REVERSE LENGTH=532;; (*ITAG) Solyc09g091910.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:66470168-66474547 transcript_region:SL2.40ch09:66470168..66474547+ go_terms:GO:0004722,GO:0003993 functional_description:"Purple acid phosphatase (AHRD V1 **** A5YBN1_TOBAC); contains Interpro domain(s) IPR015914 Purple acid phosphatase, N-terminal "; GO:0004722,GO:0003993 NbS00029397g0007.1 protein NbS00029397g0009.1 protein NbS00012501g0002.1 protein NbS00012501g0003.1 protein NbS00038534g0004.1 protein NbS00017499g0005.1 protein NbS00010850g0110.1 protein NbS00008470g0005.1 protein NbS00012996g0012.1 protein NbS00029326g0004.1 protein NbS00010033g0001.1 protein ; (*GB) gi|124360970|gb|ABN08942.1| (e_value=3e-46) Quinonprotein alcohol dehydrogenase-like [Medicago truncatula]; NbS00007704g0006.1 protein NbS00007704g0008.1 protein NbS00005536g0005.1 protein NbS00000038g0006.1 protein NbS00006046g0006.1 protein ; (*GB) gi|115455349|ref|NP_001051275.1| (e_value=1e-15) Os03g0749300 [Oryza sativa Japonica Group];; (*ITAG) Solyc01g097000.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:79740438-79746490 transcript_region:SL2.40ch01:79740438..79746490+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00006046g0007.1 protein NbS00015523g0004.1 protein ; (*ITAG) Solyc11g012120.1.1 (e_value=6e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5041281-5042288 transcript_region:SL2.40ch11:5041281..5042288- functional_description:"Plant-specific domain TIGR01615 family protein (AHRD V1 *-*- B6UDN7_MAIZE); contains Interpro domain(s) IPR006502 Protein of unknown function DUF506, plant "; NbS00006611g0003.1 protein ; (*GB) gi|225437008|ref|XP_002272541.1| (e_value=4e-40) PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Vitis vinifera];; (*SWP) sp|B9DHT4|ARIA_ARATH (e_value=1e-35) ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2;; (*TAIR) AT5G19330.1 (e_value=1e-36) | Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710;; (*ITAG) Solyc09g065210.2.1 (e_value=2e-45) genomic_reference:SL2.40ch09 gene_region:58779934-58788797 transcript_region:SL2.40ch09:58779934..58788797- go_terms:GO:0005515 functional_description:"Kelch repeat and BTB domain-containing protein 4 (AHRD V1 *--- KBTB4_MOUSE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005515 NbS00018120g0004.1 protein NbS00020885g0009.1 protein NbC25786612g0002.1 protein ; (*ITAG) Solyc12g044270.1.1 (e_value=1e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:44606763-44609277 transcript_region:SL2.40ch12:44606763..44609277+ go_terms:GO:0005089 functional_description:"Pollen-specific kinase partner protein-like protein (Fragment) (AHRD V1 *--- Q5DK68_SOLLC); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005089 NbS00050306g0004.1 protein NbS00006777g0104.1 protein NbS00006777g0105.1 protein NbS00050900g0001.1 protein NbS00004726g0004.1 protein NbS00003727g0008.1 protein NbS00003727g0009.1 protein NbS00006868g0001.1 protein NbS00006868g0105.1 protein NbS00009262g0009.1 protein NbS00033263g0002.1 protein NbS00056415g0003.1 protein NbS00009930g0004.1 protein NbS00018121g0004.1 protein NbS00018121g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=4e-27) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00018121g0009.1 protein ; (*GB) gi|255647359|gb|ACU24146.1| (e_value=1e-23) unknown [Glycine max];; (*TAIR) AT3G08600.1 (e_value=1e-17) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc06g060520.1.1 (e_value=5e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34932821-34933723 transcript_region:SL2.40ch06:34932821..34933723- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00002460g0006.1 protein NbS00013729g0014.1 protein NbS00013729g0017.1 protein NbS00034593g0001.1 protein ; (*GB) gi|13936326|gb|AAK40247.1| (e_value=3e-37) kinase interacting protein 1 [Petunia integrifolia];; (*TAIR) AT1G58210.1 (e_value=4e-16) | Symbols: EMB1674 | kinase interacting family protein | chr1:21553621-21558056 FORWARD LENGTH=1246;; (*ITAG) Solyc05g051390.2.1 (e_value=4e-38) genomic_reference:SL2.40ch05 gene_region:60828255-60831667 transcript_region:SL2.40ch05:60828255..60831667- functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00034593g0002.1 protein ; (*GB) gi|15144509|gb|AAK84476.1| (e_value=2e-13) unknown [Solanum lycopersicum];; (*ITAG) Solyc05g051390.2.1 (e_value=3e-16) genomic_reference:SL2.40ch05 gene_region:60828255-60831667 transcript_region:SL2.40ch05:60828255..60831667- functional_description:"Kinase interacting protein 1 (AHRD V1 *-*- Q94CG5_PETIN); contains Interpro domain(s) IPR011684 KIP1-like "; NbS00033579g0006.1 protein NbS00014520g0004.1 protein NbS00016931g0002.1 protein NbS00011583g0008.1 protein NbS00021911g0002.1 protein NbS00017505g0004.1 protein NbS00018493g0005.1 protein NbS00018493g0007.1 protein NbS00018493g0008.1 protein NbS00001149g0004.1 protein NbS00045986g0005.1 protein ; (*GB) gi|225455318|ref|XP_002275757.1| (e_value=1e-16) PREDICTED: histone-lysine N-methyltransferase ATXR6-like [Vitis vinifera];; (*SWP) sp|Q9FNE9|ATXR6_ARATH (e_value=2e-15) Histone-lysine N-methyltransferase ATXR6 OS=Arabidopsis thaliana GN=ATXR6 PE=2 SV=1;; (*TAIR) AT5G24330.1 (e_value=1e-16) | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349;; (*ITAG) Solyc03g082860.2.1 (e_value=2e-24) genomic_reference:SL2.40ch03 gene_region:46291731-46294839 transcript_region:SL2.40ch03:46291731..46294839+ go_terms:GO:0005515,GO:0003677 functional_description:"Histone-lysine N-methyltransferase (AHRD V1 **-- D8L815_9POAL); contains Interpro domain(s) IPR001214 SET "; GO:0005515,GO:0003677 NbS00010856g0006.1 protein NbS00043534g0003.1 protein NbS00019795g0006.1 protein NbS00019795g0008.1 protein NbS00046237g0002.1 protein NbS00004850g0013.1 protein ; (*GB) gi|359474850|ref|XP_002277741.2| (e_value=7e-23) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9LXF2|PP385_ARATH (e_value=2e-17) Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2;; (*TAIR) AT5G15300.1 (e_value=1e-18) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4968384-4970030 REVERSE LENGTH=548;; (*ITAG) Solyc01g111430.2.1 (e_value=8e-44) genomic_reference:SL2.40ch01 gene_region:89439240-89441617 transcript_region:SL2.40ch01:89439240..89441617- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00004850g0007.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=7e-12) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00004850g0010.1 protein ; (*GB) gi|359474850|ref|XP_002277741.2| (e_value=2e-51) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SY02|PP301_ARATH (e_value=5e-28) Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1;; (*TAIR) AT4G02750.1 (e_value=4e-29) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781;; (*ITAG) Solyc01g111430.2.1 (e_value=2e-78) genomic_reference:SL2.40ch01 gene_region:89439240-89441617 transcript_region:SL2.40ch01:89439240..89441617- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L173_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00006548g0011.1 protein NbS00006548g0006.1 protein ; (*GB) gi|255589962|ref|XP_002535139.1| (e_value=8e-16) conserved hypothetical protein [Ricinus communis]; NbS00006548g0008.1 protein NbS00015891g0003.1 protein NbS00006820g0006.1 protein NbS00006820g0009.1 protein NbC23883165g0001.1 protein ; (*GB) gi|224147096|ref|XP_002336406.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57580.1 (e_value=1e-38) | Symbols: | Calmodulin-binding protein | chr5:23314994-23317683 REVERSE LENGTH=647;; (*ITAG) Solyc02g079040.2.1 (e_value=1e-45) genomic_reference:SL2.40ch02 gene_region:38241517-38248511 transcript_region:SL2.40ch02:38241517..38248511+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (Fragment) (AHRD V1 *-** Q9M451_CICAR); contains Interpro domain(s) IPR012416 Calmodulin binding protein-like "; GO:0005516 NbS00050359g0003.1 protein NbS00007410g0005.1 protein NbS00014481g0003.1 protein NbS00041424g0002.1 protein NbS00041424g0003.1 protein NbS00023747g0004.1 protein NbS00007205g0007.1 protein ; (*GB) gi|358349303|ref|XP_003638678.1| (e_value=6e-17) Dynamin-related protein 1A [Medicago truncatula];; (*SWP) sp|Q39828|SDL5A_SOYBN (e_value=2e-16) Dynamin-related protein 5A OS=Glycine max PE=2 SV=1;; (*TAIR) AT5G42080.1 (e_value=3e-17) | Symbols: ADL1, ADL1A, AG68, DRP1A, RSW9, DL1 | dynamin-like protein | chr5:16820661-16824536 REVERSE LENGTH=610;; (*ITAG) Solyc01g095970.2.1 (e_value=1e-20) genomic_reference:SL2.40ch01 gene_region:78843007-78851652 transcript_region:SL2.40ch01:78843007..78851652- go_terms:GO:0003924 functional_description:"Dynamin 2 (AHRD V1 ***- Q4V8Z7_DANRE); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0003924 NbS00007205g0008.1 protein NbS00004453g0001.1 protein NbS00004453g0003.1 protein ; (*ITAG) Solyc06g068230.2.1 (e_value=9e-26) genomic_reference:SL2.40ch06 gene_region:38675059-38684575 transcript_region:SL2.40ch06:38675059..38684575+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_NEUCR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00010228g0001.1 protein NbS00005719g0002.1 protein NbS00006625g0002.1 protein NbS00025356g0007.1 protein NbS00001133g0009.1 protein NbS00033917g0008.1 protein NbS00018059g0003.1 protein NbS00007672g0003.1 protein NbS00044142g0003.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00042262g0003.1 protein ; (*GB) gi|359497798|ref|XP_003635646.1| (e_value=4e-16) PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic-like, partial [Vitis vinifera];; (*ITAG) Solyc01g097670.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:80193056-80195803 transcript_region:SL2.40ch01:80193056..80195803+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00042262g0004.1 protein NbC23778713g0001.1 protein ; (*ITAG) Solyc07g042580.2.1 (e_value=2e-33) genomic_reference:SL2.40ch07 gene_region:53367985-53373431 transcript_region:SL2.40ch07:53367985..53373431+ go_terms:GO:0005488 functional_description:"Microtubule-associated protein TORTIFOLIA1 (AHRD V1 *--- B6SS76_MAIZE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00003947g0005.1 protein NbS00040369g0002.1 protein ; (*GB) gi|359497194|ref|XP_003635450.1| (e_value=3e-30) PREDICTED: uncharacterized protein LOC100853798 [Vitis vinifera];; (*ITAG) Solyc04g055250.2.1 (e_value=1e-53) genomic_reference:SL2.40ch04 gene_region:53024745-53031415 transcript_region:SL2.40ch04:53024745..53031415- functional_description:"Unknown Protein (AHRD V1)"; NbS00010530g0103.1 protein NbS00010530g0106.1 protein NbS00033783g0003.1 protein ; (*GB) gi|224119828|ref|XP_002331171.1| (e_value=1e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22320.1 (e_value=2e-19) | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | Eukaryotic rpb5 RNA polymerase subunit family protein | chr3:7891045-7892094 REVERSE LENGTH=205;; (*ITAG) Solyc05g051790.2.1 (e_value=2e-23) genomic_reference:SL2.40ch05 gene_region:61316077-61319031 transcript_region:SL2.40ch05:61316077..61319031+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase subunit H (AHRD V1 *-*- RPOH_METBU); contains Interpro domain(s) IPR014381 DNA-directed RNA polymerase, RPB5 subunit "; GO:0005515 NbS00010399g0115.1 protein NbS00004045g0105.1 protein NbS00004045g0209.1 protein NbS00030155g0002.1 protein NbS00002331g0104.1 protein NbS00052673g0003.1 protein NbS00005486g0008.1 protein NbS00010837g0007.1 protein NbS00010837g0008.1 protein ; (*GB) gi|357444909|ref|XP_003592732.1| (e_value=6e-32) ATP-dependent RNA helicase DHX8 [Medicago truncatula];; (*SWP) sp|Q38953|DHX8_ARATH (e_value=9e-33) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2;; (*TAIR) AT3G26560.1 (e_value=7e-34) | Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168;; (*ITAG) Solyc07g039550.2.1 (e_value=5e-34) genomic_reference:SL2.40ch07 gene_region:45039463-45043515 transcript_region:SL2.40ch07:45039463..45043515- go_terms:GO:0004004 functional_description:"ATP-dependent RNA helicase (AHRD V1 **** Q16PT8_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00057691g0006.1 protein NbS00010153g0002.1 protein NbS00003097g0008.1 protein NbS00013946g0006.1 protein NbS00021629g0005.1 protein NbS00031175g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=8e-12) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00031175g0004.1 protein NbS00031175g0006.1 protein NbS00018583g0006.1 protein NbS00010191g0007.1 protein ; (*GB) gi|350536199|ref|NP_001234234.1| (e_value=7e-71) chloroplast threonine deaminase 1 precursor [Solanum lycopersicum];; (*SWP) sp|Q9ZSS6|THD1_ARATH (e_value=1e-51) Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1;; (*TAIR) AT3G10050.1 (e_value=8e-53) | Symbols: OMR1 | L-O-methylthreonine resistant 1 | chr3:3099164-3101741 REVERSE LENGTH=592;; (*ITAG) Solyc10g083760.1.1 (e_value=1e-73) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62837524-62842849 transcript_region:SL2.40ch10:62837524..62842849- go_terms:GO:0008152,GO:0006520,GO:0009097 functional_description:"Threonine dehydratase biosynthetic (AHRD V1 ***- D9SD66_9PROT); contains Interpro domain(s) IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site IPR005787 Threonine dehydratase I "; GO:0008152,GO:0006520,GO:0009097 NbS00010191g0008.1 protein ; (*GB) gi|255538832|ref|XP_002510481.1| (e_value=2e-24) tetratricopeptide repeat protein, tpr, putative [Ricinus communis];; (*SWP) sp|O23052|Y1515_ARATH (e_value=1e-25) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=9e-27) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=4e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00008706g0012.1 protein NbS00008706g0016.1 protein NbS00008706g0018.1 protein NbS00023782g0002.1 protein NbS00007324g0003.1 protein NbC23656513g0001.1 protein ; (*GB) gi|326505958|dbj|BAJ91218.1| (e_value=7e-16) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT1G73460.1 (e_value=1e-17) | Symbols: | Protein kinase superfamily protein | chr1:27620122-27624899 FORWARD LENGTH=1169;; (*ITAG) Solyc03g098150.2.1 (e_value=2e-18) genomic_reference:SL2.40ch03 gene_region:53924547-53934622 transcript_region:SL2.40ch03:53924547..53934622+ go_terms:GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7KRI5_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00011998g0003.1 protein NbS00011998g0111.1 protein NbS00011998g0112.1 protein NbS00011998g0114.1 protein NbS00011998g0110.1 protein NbS00006450g0002.1 protein ; (*GB) gi|225448507|ref|XP_002273020.1| (e_value=3e-31) PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera];; (*TAIR) AT3G56040.1 (e_value=3e-23) | Symbols: UGP3 | UDP-glucose pyrophosphorylase 3 | chr3:20792689-20797482 REVERSE LENGTH=883;; (*ITAG) Solyc06g051080.2.1 (e_value=5e-37) genomic_reference:SL2.40ch06 gene_region:30687110-30697786 transcript_region:SL2.40ch06:30687110..30697786+ functional_description:"UDP-sugar pyrophosphorylase (AHRD V1 *--- USP_ORYSI)"; NbS00013722g0004.1 protein NbS00007740g0004.1 protein NbC25845915g0002.1 protein ; (*TAIR) AT3G12670.1 (e_value=4e-14) | Symbols: emb2742 | CTP synthase family protein | chr3:4020351-4024086 REVERSE LENGTH=591;; (*ITAG) Solyc01g079650.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:71283871-71294729 transcript_region:SL2.40ch01:71283871..71294729+ go_terms:GO:0006221,GO:0003824 functional_description:"CTP synthase-like protein (AHRD V1 ***- Q8L6Z9_ARATH); contains Interpro domain(s) IPR004468 CTP synthase "; GO:0006221,GO:0003824 NbS00017648g0001.1 protein NbS00017648g0002.1 protein NbS00023050g0110.1 protein NbS00017458g0002.1 protein NbS00006575g0008.1 protein ; (*ITAG) Solyc11g044480.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35792430-35811862 transcript_region:SL2.40ch11:35792430..35811862- go_terms:GO:0005488 functional_description:"Protein EFR3 homolog (AHRD V1 *-*- EFR3_CAEEL); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00032098g0006.1 protein NbS00032098g0007.1 protein NbS00032098g0008.1 protein NbS00011408g0014.1 protein NbS00011408g0009.1 protein NbS00018606g0001.1 protein ; (*ITAG) Solyc03g116800.2.1 (e_value=4e-18) genomic_reference:SL2.40ch03 gene_region:60125950-60126725 transcript_region:SL2.40ch03:60125950..60126725- functional_description:"Unknown Protein (AHRD V1)"; NbS00007371g0003.1 protein NbS00011414g0002.1 protein NbS00011414g0003.1 protein NbS00021459g0009.1 protein ; (*GB) gi|125570510|gb|EAZ12025.1| (e_value=3e-17) hypothetical protein OsJ_01904 [Oryza sativa Japonica Group]; NbS00003002g0006.1 protein NbS00028206g0001.1 protein NbS00015752g0004.1 protein NbS00009242g0005.1 protein NbS00009242g0006.1 protein NbS00011325g0006.1 protein ; (*GB) gi|226508070|ref|NP_001151918.1| (e_value=5e-14) ATP binding protein [Zea mays];; (*TAIR) AT4G10730.1 (e_value=2e-14) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g083040.2.1 (e_value=9e-16) genomic_reference:SL2.40ch08 gene_region:62790918-62801166 transcript_region:SL2.40ch08:62790918..62801166- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00039827g0002.1 protein NbS00009968g0002.1 protein ; (*ITAG) Solyc08g077170.2.1 (e_value=4e-15) genomic_reference:SL2.40ch08 gene_region:58247937-58253733 transcript_region:SL2.40ch08:58247937..58253733+ go_terms:GO:0042936 functional_description:"Peptide transporter-like protein (AHRD V1 **-* Q9SVS9_ARATH); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0042936 NbS00009968g0003.1 protein NbS00021368g0017.1 protein NbS00021368g0019.1 protein NbS00014087g0003.1 protein NbS00014711g0001.1 protein NbS00011057g0112.1 protein NbS00011057g0116.1 protein NbS00022570g0007.1 protein NbS00022570g0010.1 protein NbC23400006g0001.1 protein ; (*ITAG) Solyc09g009120.2.1 (e_value=3e-15) genomic_reference:SL2.40ch09 gene_region:2454280-2462187 transcript_region:SL2.40ch09:2454280..2462187+ go_terms:GO:0005622 functional_description:"mRNA cleavage factor complex component Pcf11 (AHRD V1 *--- C5JVP7_AJEDS); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; GO:0005622 NbS00025831g0005.1 protein NbS00051249g0001.1 protein NbS00022632g0010.1 protein NbS00008677g0006.1 protein NbS00032767g0006.1 protein NbS00032767g0008.1 protein NbS00032767g0010.1 protein NbS00013965g0112.1 protein NbS00013965g0115.1 protein NbS00013965g0123.1 protein NbS00013965g0109.1 protein NbS00013965g0110.1 protein NbS00021922g0006.1 protein NbS00021922g0010.1 protein NbS00028086g0001.1 protein NbS00018717g0005.1 protein NbS00022270g0006.1 protein ; (*GB) gi|224111122|ref|XP_002315755.1| (e_value=2e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT1G04190.1 (e_value=7e-16) | Symbols: TPR3 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1106617-1108557 REVERSE LENGTH=328;; (*ITAG) Solyc09g082540.2.1 (e_value=4e-22) genomic_reference:SL2.40ch09 gene_region:63657303-63663270 transcript_region:SL2.40ch09:63657303..63663270+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 28 (AHRD V1 *--- TTC28_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00008153g0001.1 protein NbS00008153g0002.1 protein NbS00014530g0002.1 protein NbS00055023g0002.1 protein NbS00000861g0203.1 protein NbS00000861g0204.1 protein NbS00000861g0206.1 protein NbS00002593g0001.1 protein ; (*GB) gi|384081608|ref|NP_001244908.1| (e_value=2e-20) cytokinin oxidase/dehydrogenase-like 7 precursor [Solanum lycopersicum];; (*SWP) sp|O22213|CKX1_ARATH (e_value=2e-14) Cytokinin dehydrogenase 1 OS=Arabidopsis thaliana GN=CKX1 PE=1 SV=1;; (*TAIR) AT2G41510.1 (e_value=1e-15) | Symbols: ATCKX1, CKX1 | cytokinin oxidase/dehydrogenase 1 | chr2:17314626-17316861 FORWARD LENGTH=575;; (*ITAG) Solyc10g079870.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60670204-60672691 transcript_region:SL2.40ch10:60670204..60672691+ go_terms:GO:0055114,GO:0050660 functional_description:"Cytokinin oxidase/dehydrogenase 1 (AHRD V1 ***- C0LPA6_SOLTU); contains Interpro domain(s) IPR015345 Cytokinin dehydrogenase 1, FAD and cytokinin binding "; GO:0055114,GO:0050660 NbS00005375g0007.1 protein NbS00008590g0003.1 protein NbS00012591g0003.1 protein NbS00005124g0005.1 protein NbS00010949g0003.1 protein NbS00010949g0004.1 protein ; (*ITAG) Solyc02g068500.2.1 (e_value=8e-39) genomic_reference:SL2.40ch02 gene_region:33023030-33030517 transcript_region:SL2.40ch02:33023030..33030517+ go_terms:GO:0045454 functional_description:"Thioredoxin o (AHRD V1 *-*- B9MUN0_POPTR); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00001479g0013.1 protein NbS00001479g0014.1 protein NbS00001479g0015.1 protein NbS00010113g0007.1 protein NbS00061291g0003.1 protein NbS00035812g0002.1 protein NbS00019176g0002.1 protein ; (*GB) gi|255580882|ref|XP_002531260.1| (e_value=7e-37) Root phototropism protein, putative [Ricinus communis];; (*SWP) sp|Q9LFU0|DOT3_ARATH (e_value=8e-21) Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1;; (*TAIR) AT5G10250.1 (e_value=6e-22) | Symbols: DOT3 | Phototropic-responsive NPH3 family protein | chr5:3217028-3219368 REVERSE LENGTH=607;; (*ITAG) Solyc05g051580.2.1 (e_value=2e-44) genomic_reference:SL2.40ch05 gene_region:61095883-61101104 transcript_region:SL2.40ch05:61095883..61101104+ go_terms:GO:0005515 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515 NbS00034256g0001.1 protein NbS00041317g0003.1 protein NbS00054761g0002.1 protein NbS00003250g0020.1 protein NbS00003250g0024.1 protein NbS00003250g0028.1 protein NbS00026762g0012.1 protein NbS00026762g0010.1 protein NbS00004692g0207.1 protein NbS00004692g0208.1 protein NbS00006007g0004.1 protein NbS00028340g0001.1 protein NbS00014608g0003.1 protein NbS00006432g0014.1 protein NbS00036006g0002.1 protein NbS00040683g0002.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00024739g0005.1 protein NbC24511838g0001.1 protein NbS00002772g0012.1 protein NbS00002772g0007.1 protein NbS00014992g0012.1 protein NbS00014992g0007.1 protein NbS00022593g0001.1 protein NbS00005886g0016.1 protein NbS00005886g0017.1 protein NbS00005886g0020.1 protein ; (*ITAG) Solyc07g025240.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26940367-26940952 transcript_region:SL2.40ch07:26940367..26940952- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9Z8_KALDA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00005886g0021.1 protein NbS00005886g0022.1 protein NbS00005886g0023.1 protein NbS00005886g0025.1 protein NbS00005886g0029.1 protein NbS00005886g0031.1 protein ; (*ITAG) Solyc07g025240.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:26940367-26940952 transcript_region:SL2.40ch07:26940367..26940952- go_terms:GO:0009507 functional_description:"Ycf2 (AHRD V1 *-*- A6Y9Z8_KALDA); contains Interpro domain(s) IPR008543 Chloroplast Ycf2 "; GO:0009507 NbS00005886g0032.1 protein NbS00005886g0041.1 protein ; (*GB) gi|296083691|emb|CBI23680.3| (e_value=6e-26) unnamed protein product [Vitis vinifera]; NbS00005886g0042.1 protein NbS00005886g0126.1 protein NbS00005886g0133.1 protein NbS00005886g0139.1 protein NbS00005886g0147.1 protein NbS00005886g0148.1 protein NbS00005886g0152.1 protein NbS00037649g0005.1 protein NbS00050662g0002.1 protein NbS00037355g0002.1 protein NbS00049846g0003.1 protein NbS00034164g0005.1 protein NbS00055510g0003.1 protein NbS00006047g0002.1 protein NbS00051719g0003.1 protein NbC23797905g0001.1 protein ; (*GB) gi|297844810|ref|XP_002890286.1| (e_value=3e-40) hypothetical protein ARALYDRAFT_312807 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q949Q1|GAUTB_ARATH (e_value=5e-41) Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1;; (*TAIR) AT1G18580.1 (e_value=4e-42) | Symbols: GAUT11 | galacturonosyltransferase 11 | chr1:6396144-6398005 FORWARD LENGTH=537;; (*ITAG) Solyc03g114810.2.1 (e_value=2e-42) genomic_reference:SL2.40ch03 gene_region:58741832-58746719 transcript_region:SL2.40ch03:58741832..58746719- go_terms:GO:0016758 functional_description:"Glycosyltransferase (AHRD V1 ***- B9N4D7_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0016758 NbS00032229g0001.1 protein ; (*ITAG) Solyc02g022870.2.1 (e_value=4e-19) genomic_reference:SL2.40ch02 gene_region:14976721-14987190 transcript_region:SL2.40ch02:14976721..14987190- functional_description:"EMB1611/MEE22 (AHRD V1 *-*- D7LH45_ARALY)"; NbS00031826g0003.1 protein ; (*GB) gi|238011252|gb|ACR36661.1| (e_value=2e-19) unknown [Zea mays]; NbS00030643g0004.1 protein ; (*GB) gi|56744289|gb|AAW28568.1| (e_value=8e-28) Putative transposon MuDR mudrA-like protein, identical [Solanum demissum]; NbS00060765g0004.1 protein NbS00009957g0003.1 protein NbS00009957g0005.1 protein NbS00028573g0004.1 protein ; (*GB) gi|359474381|ref|XP_003631447.1| (e_value=8e-24) PREDICTED: trehalose-phosphate phosphatase-like [Vitis vinifera];; (*SWP) sp|Q9SU39|TPPF_ARATH (e_value=3e-23) Probable trehalose-phosphate phosphatase F OS=Arabidopsis thaliana GN=TPPF PE=2 SV=1;; (*TAIR) AT4G12430.1 (e_value=3e-24) | Symbols: TPPF | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7365480-7367346 REVERSE LENGTH=368;; (*ITAG) Solyc08g079060.2.1 (e_value=6e-29) genomic_reference:SL2.40ch08 gene_region:59876550-59879243 transcript_region:SL2.40ch08:59876550..59879243+ go_terms:GO:0008152,GO:0005992 functional_description:"Trehalose 6-phosphate phosphatase (AHRD V1 ***- D4QAK5_TOBAC); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0008152,GO:0005992 NbS00028573g0006.1 protein NbS00010135g0006.1 protein NbS00001157g0003.1 protein NbS00029256g0006.1 protein NbS00044091g0005.1 protein ; (*GB) gi|7547401|gb|AAB28813.2| (e_value=3e-15) cytochrome c1 precursor [Solanum tuberosum];; (*SWP) sp|P25076|CY11_SOLTU (e_value=1e-16) Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1;; (*TAIR) AT3G27240.1 (e_value=2e-15) | Symbols: | Cytochrome C1 family | chr3:10056144-10058370 REVERSE LENGTH=307;; (*ITAG) Solyc06g067920.2.1 (e_value=7e-18) genomic_reference:SL2.40ch06 gene_region:38487804-38494200 transcript_region:SL2.40ch06:38487804..38494200- go_terms:GO:0045153 functional_description:"Cytochrome c1 (AHRD V1 **** Q9FKS5_ARATH); contains Interpro domain(s) IPR002326 Cytochrome c1 "; GO:0045153 NbS00011219g0011.1 protein NbS00011219g0012.1 protein NbS00011219g0005.1 protein NbS00011219g0008.1 protein NbS00011219g0010.1 protein NbS00026557g0003.1 protein NbS00017757g0018.1 protein ; (*ITAG) Solyc04g076560.2.1 (e_value=2e-13) genomic_reference:SL2.40ch04 gene_region:59062239-59066107 transcript_region:SL2.40ch04:59062239..59066107+ functional_description:"Neuroguidin (Fragment) (AHRD V1 *--- C0PUK7_SALSA); contains Interpro domain(s) IPR007146 Sas10/Utp3/C1D "; NbS00035020g0004.1 protein NbS00035020g0005.1 protein NbS00028290g0004.1 protein NbS00011071g0002.1 protein NbS00026304g0007.1 protein NbS00008912g0008.1 protein NbS00016832g0005.1 protein NbS00016832g0006.1 protein NbS00052803g0005.1 protein NbS00050134g0002.1 protein NbS00022938g0001.1 protein NbS00006164g0104.1 protein NbS00000155g0001.1 protein NbS00027506g0009.1 protein NbS00012532g0004.1 protein NbS00007115g0005.1 protein NbS00007115g0008.1 protein NbS00012138g0003.1 protein NbS00026483g0003.1 protein NbS00041803g0003.1 protein NbC24364439g0001.1 protein ; (*GB) gi|380509269|gb|AFD64637.1| (e_value=3e-32) sucrose-phosphate synthase A2 [Solanum lycopersicum];; (*SWP) sp|P49031|SPSA_BETVU (e_value=7e-31) Probable sucrose-phosphate synthase OS=Beta vulgaris GN=SPS PE=2 SV=1;; (*TAIR) AT5G20280.1 (e_value=2e-30) | Symbols: ATSPS1F, SPS1F | sucrose phosphate synthase 1F | chr5:6844994-6849997 REVERSE LENGTH=1043;; (*ITAG) Solyc08g042000.2.1 (e_value=6e-35) genomic_reference:SL2.40ch08 gene_region:28598289-28605520 transcript_region:SL2.40ch08:28598289..28605520- go_terms:GO:0046524 functional_description:"Sucrose phosphate synthase protein 1 (AHRD V1 **** B2BMQ3_PRUPE); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0046524 NbS00029253g0104.1 protein NbS00003148g0003.1 protein NbS00019486g0005.1 protein NbS00019486g0006.1 protein ; (*GB) gi|2811025|sp|O04057.1|ASPR_CUCPE (e_value=3e-83) RecName: Full=Aspartic proteinase; Flags: Precursor;; (*SWP) sp|O04057|ASPR_CUCPE (e_value=9e-85) Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1;; (*TAIR) AT1G11910.1 (e_value=2e-78) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506;; (*ITAG) Solyc02g080880.2.1 (e_value=7e-95) genomic_reference:SL2.40ch02 gene_region:39553552-39559262 transcript_region:SL2.40ch02:39553552..39559262- go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **-* Q8L6A8_THECC); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00019486g0007.1 protein ; (*ITAG) Solyc03g122250.2.1 (e_value=6e-14) genomic_reference:SL2.40ch03 gene_region:64185690-64190037 transcript_region:SL2.40ch03:64185690..64190037- go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00011827g0001.1 protein NbS00027883g0002.1 protein NbS00029073g0005.1 protein NbS00026720g0002.1 protein NbS00046921g0002.1 protein ; (*GB) gi|224104953|ref|XP_002313632.1| (e_value=3e-42) predicted protein [Populus trichocarpa];; (*TAIR) AT5G20950.2 (e_value=6e-39) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc01g009240.2.1 (e_value=3e-46) genomic_reference:SL2.40ch01 gene_region:3269096-3273535 transcript_region:SL2.40ch01:3269096..3273535+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00013837g0005.1 protein NbS00013837g0006.1 protein NbS00012360g0001.1 protein NbS00003168g0106.1 protein NbS00003168g0110.1 protein NbS00003168g0002.1 protein NbS00003389g0007.1 protein NbS00026316g0001.1 protein ; (*GB) gi|357497713|ref|XP_003619145.1| (e_value=2e-25) Pectinesterase [Medicago truncatula];; (*SWP) sp|Q4PSN0|PME29_ARATH (e_value=1e-26) Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1;; (*TAIR) AT3G24130.1 (e_value=9e-28) | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713361 REVERSE LENGTH=335;; (*ITAG) Solyc12g098340.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64223330-64226835 transcript_region:SL2.40ch12:64223330..64226835+ go_terms:GO:0005618 functional_description:"Pectinesterase (AHRD V1 ***- B9RWI7_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618 NbS00029184g0004.1 protein NbS00029184g0005.1 protein NbS00029184g0006.1 protein NbS00034740g0001.1 protein ; (*GB) gi|297736577|emb|CBI25448.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5VRH9|PUB12_ORYSJ (e_value=3e-15) U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1;; (*TAIR) AT2G23140.2 (e_value=4e-15) | Symbols: | RING/U-box superfamily protein with ARM repeat domain | chr2:9845696-9848762 REVERSE LENGTH=826;; (*ITAG) Solyc06g051090.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:30698443-30700131 transcript_region:SL2.40ch06:30698443..30700131- go_terms:GO:0004842 functional_description:"U-box domain-containing protein 13 (AHRD V1 **-- PUB13_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0004842 NbS00036596g0011.1 protein NbS00036596g0007.1 protein NbS00036596g0008.1 protein ; (*GB) gi|54261825|gb|AAV31175.1| (e_value=5e-26) Putative disease resistance protein, identical [Solanum tuberosum];; (*ITAG) Solyc04g015220.2.1 (e_value=3e-29) genomic_reference:SL2.40ch04 gene_region:5406762-5409516 transcript_region:SL2.40ch04:5406762..5409516- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00040609g0004.1 protein ; (*GB) gi|296082781|emb|CBI21786.3| (e_value=2e-135) unnamed protein product [Vitis vinifera];; (*SWP) sp|P37518|ENGD_BACSU (e_value=3e-64) GTP-dependent nucleic acid-binding protein engD OS=Bacillus subtilis (strain 168) GN=engD PE=3 SV=1;; (*TAIR) AT1G56050.1 (e_value=4e-124) | Symbols: | GTP-binding protein-related | chr1:20963793-20966181 FORWARD LENGTH=421;; (*ITAG) Solyc07g066430.2.1 (e_value=3e-148) genomic_reference:SL2.40ch07 gene_region:65086442-65095484 transcript_region:SL2.40ch07:65086442..65095484+ go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** B0JHK9_MICAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00003766g0006.1 protein NbS00026046g0011.1 protein NbS00026046g0008.1 protein NbS00026046g0009.1 protein NbS00043218g0001.1 protein NbS00044874g0002.1 protein NbS00023526g0013.1 protein NbS00023526g0009.1 protein ; (*ITAG) Solyc00g058280.1.1 (e_value=8e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:14036744-14037773 transcript_region:SL2.40ch00:14036744..14037773- functional_description:"Unknown Protein (AHRD V1)"; NbS00028255g0012.1 protein NbS00028255g0009.1 protein ; (*GB) gi|224133828|ref|XP_002321671.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT5G62640.3 (e_value=4e-16) | Symbols: | proline-rich family protein | chr5:25149584-25152351 REVERSE LENGTH=540;; (*ITAG) Solyc06g071140.2.1 (e_value=3e-30) genomic_reference:SL2.40ch06 gene_region:40120371-40127461 transcript_region:SL2.40ch06:40120371..40127461+ go_terms:GO:0006396 functional_description:"EARLY FLOWERING 5 (AHRD V1 *-*- Q6QTF1_ARATH); contains Interpro domain(s) IPR019007 WW domain binding protein 11 "; GO:0006396 NbS00022240g0011.1 protein NbS00022240g0010.1 protein NbS00005948g0006.1 protein NbS00005948g0008.1 protein ; (*GB) gi|356576895|ref|XP_003556565.1| (e_value=2e-14) PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Glycine max];; (*SWP) sp|O04973|LEU1A_SOLPN (e_value=2e-15) 2-isopropylmalate synthase A OS=Solanum pennellii GN=IPMSA PE=2 SV=1;; (*TAIR) AT1G18500.1 (e_value=4e-15) | Symbols: MAML-4, IPMS1 | methylthioalkylmalate synthase-like 4 | chr1:6369347-6372861 FORWARD LENGTH=631;; (*ITAG) Solyc08g014130.2.1 (e_value=1e-16) genomic_reference:SL2.40ch08 gene_region:3734998-3744536 transcript_region:SL2.40ch08:3734998..3744536+ go_terms:GO:0003852 functional_description:"2-isopropylmalate synthase 1 (AHRD V1 **** Q30DX9_9BRAS); contains Interpro domain(s) IPR005671 Bacterial 2-isopropylmalate synthase "; GO:0003852 NbS00061783g0001.1 protein NbS00020396g0001.1 protein ; (*ITAG) Solyc01g103690.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00024873g0006.1 protein NbS00029672g0003.1 protein NbS00034664g0001.1 protein NbS00002110g0007.1 protein NbS00012857g0005.1 protein NbS00050020g0002.1 protein ; (*ITAG) Solyc03g071730.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:41448300-41448871 transcript_region:SL2.40ch03:41448300..41448871- functional_description:"Unknown Protein (AHRD V1)"; NbS00015859g0003.1 protein NbS00015859g0006.1 protein NbS00021683g0002.1 protein NbS00048832g0002.1 protein NbS00006115g0012.1 protein NbS00006115g0007.1 protein NbS00053951g0001.1 protein NbS00013247g0005.1 protein ; (*GB) gi|147800376|emb|CAN62137.1| (e_value=1e-13) hypothetical protein VITISV_017372 [Vitis vinifera]; NbS00034803g0003.1 protein NbS00001969g0006.1 protein NbS00015412g0002.1 protein NbS00029194g0002.1 protein NbS00029194g0003.1 protein ; (*GB) gi|110289419|gb|ABG66193.1| (e_value=6e-13) Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group];; (*TAIR) AT4G10730.1 (e_value=1e-13) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g083040.2.1 (e_value=1e-14) genomic_reference:SL2.40ch08 gene_region:62790918-62801166 transcript_region:SL2.40ch08:62790918..62801166- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00029194g0004.1 protein NbS00015345g0002.1 protein NbS00045632g0002.1 protein NbS00024719g0004.1 protein ; (*ITAG) Solyc11g030830.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:20024032-20024570 transcript_region:SL2.40ch11:20024032..20024570- functional_description:"Photosystem Q(B) protein (AHRD V1 *-*- B2LMH3_GUIAB)"; NbS00003674g0002.1 protein NbS00003674g0004.1 protein NbS00030403g0006.1 protein NbS00003031g0003.1 protein ; (*GB) gi|20138107|sp|Q9M5Q1.1|FUT1_PEA (e_value=2e-34) RecName: Full=Galactoside 2-alpha-L-fucosyltransferase; AltName: Full=PsFT1; AltName: Full=Xyloglucan alpha-(1,2)-fucosyltransferase;; (*SWP) sp|Q9M5Q1|FUT1_PEA (e_value=6e-36) Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1;; (*TAIR) AT2G03220.1 (e_value=1e-33) | Symbols: FT1, ATFUT1, ATFT1, MUR2 | fucosyltransferase 1 | chr2:970401-972353 REVERSE LENGTH=558;; (*ITAG) Solyc07g047920.1.1 (e_value=1e-42) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56451952-56454673 transcript_region:SL2.40ch07:56451952..56454673- go_terms:GO:0008417 functional_description:"Fucosyltransferase 7 (AHRD V1 **** B6SRP0_MAIZE); contains Interpro domain(s) IPR004938 Xyloglucan fucosyltransferase "; GO:0008417 NbS00037737g0003.1 protein NbS00012888g0003.1 protein NbS00033679g0001.1 protein NbC23984723g0001.1 protein ; (*GB) gi|373938259|dbj|BAL46501.1| (e_value=2e-28) carbohydrate [Diospyros kaki];; (*SWP) sp|Q9SVG4|RETOL_ARATH (e_value=2e-17) Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2;; (*TAIR) AT4G20840.1 (e_value=7e-30) | Symbols: | FAD-binding Berberine family protein | chr4:11157916-11159535 FORWARD LENGTH=539;; (*ITAG) Solyc02g022850.1.1 (e_value=5e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:14916195-14917820 transcript_region:SL2.40ch02:14916195..14917820- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MFH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00047587g0004.1 protein NbC23794879g0001.1 protein ; (*GB) gi|297734043|emb|CBI15290.3| (e_value=9e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G47890.1 (e_value=2e-29) | Symbols: | Ubiquitin carboxyl-terminal hydrolase-related protein | chr3:17667172-17673530 REVERSE LENGTH=1568;; (*ITAG) Solyc06g071120.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:40097356-40108564 transcript_region:SL2.40ch06:40097356..40108564+ go_terms:GO:0006511,GO:0005622 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q10RB2_ORYSJ); contains Interpro domain(s) IPR006865 Protein of unknown function DUF629 "; GO:0006511,GO:0005622 NbS00027667g0005.1 protein NbS00027667g0007.1 protein NbS00013422g0015.1 protein NbS00013422g0008.1 protein ; (*GB) gi|297736511|emb|CBI25382.3| (e_value=9e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q501D5|MCMBP_ARATH (e_value=5e-16) Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1;; (*TAIR) AT2G40550.1 (e_value=4e-17) | Symbols: ETG1 | E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589; NbS00040167g0001.1 protein NbS00000860g0008.1 protein NbS00008167g0004.1 protein NbS00008167g0007.1 protein NbC24091158g0001.1 protein ; (*GB) gi|255577450|ref|XP_002529604.1| (e_value=2e-40) E3 ubiquitin ligase PUB14, putative [Ricinus communis];; (*SWP) sp|Q8VZ40|PUB14_ARATH (e_value=1e-33) U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1;; (*TAIR) AT3G54850.1 (e_value=1e-34) | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20321524-20323848 FORWARD LENGTH=632;; (*ITAG) Solyc11g008390.1.1 (e_value=5e-45) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:2592403-2595079 transcript_region:SL2.40ch11:2592403..2595079- go_terms:GO:0005488,GO:0000151 functional_description:"U-box domain-containing protein 14 (AHRD V1 **-- PUB14_ARATH); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00040959g0002.1 protein NbS00018424g0004.1 protein NbS00011188g0003.1 protein NbS00056193g0003.1 protein NbS00025009g0002.1 protein NbS00025009g0101.1 protein NbS00025009g0102.1 protein NbS00017115g0012.1 protein ; (*ITAG) Solyc12g042510.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43293148-43297685 transcript_region:SL2.40ch12:43293148..43297685- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00013628g0003.1 protein NbS00003817g0001.1 protein NbS00027044g0011.1 protein NbS00027044g0007.1 protein NbS00058941g0002.1 protein ; (*GB) gi|297812707|ref|XP_002874237.1| (e_value=7e-64) RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|O15042|SR140_HUMAN (e_value=5e-30) U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens GN=U2SURP PE=1 SV=2;; (*TAIR) AT5G25060.1 (e_value=4e-65) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=2e-71) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00036836g0001.1 protein NbS00051557g0004.1 protein NbS00010108g0004.1 protein NbS00010108g0005.1 protein NbS00043976g0001.1 protein NbS00042582g0001.1 protein NbS00014904g0002.1 protein NbS00014904g0102.1 protein NbC23469890g0001.1 protein ; (*GB) gi|113205238|gb|ABI34308.1| (e_value=2e-32) WD domain containing protein, putative [Solanum demissum];; (*TAIR) AT3G45620.1 (e_value=3e-22) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:16745918-16747993 FORWARD LENGTH=481;; (*ITAG) Solyc11g072540.1.1 (e_value=6e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52812637-52816593 transcript_region:SL2.40ch11:52812637..52816593+ functional_description:"DDB1- and CUL4-associated factor 8-like protein 1 (AHRD V1 **-- DC8L1_XENLA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00021054g0001.1 protein ; (*GB) gi|255562324|ref|XP_002522169.1| (e_value=1e-17) RING finger protein 113A, putative [Ricinus communis];; (*SWP) sp|Q8GX84|C3H1_ARATH (e_value=1e-14) Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2;; (*TAIR) AT1G01350.1 (e_value=9e-16) | Symbols: | Zinc finger (CCCH-type/C3HC4-type RING finger) family protein | chr1:136732-137970 FORWARD LENGTH=343; NbS00039304g0014.1 protein ; (*TAIR) AT5G46630.2 (e_value=1e-14) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923060 FORWARD LENGTH=441;; (*ITAG) Solyc06g061150.2.1 (e_value=4e-14) genomic_reference:SL2.40ch06 gene_region:35536609-35549278 transcript_region:SL2.40ch06:35536609..35549278+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00039304g0017.1 protein NbS00039304g0007.1 protein NbS00019055g0003.1 protein NbS00061645g0002.1 protein NbS00061645g0003.1 protein NbS00061645g0004.1 protein NbS00038509g0004.1 protein NbS00020462g0002.1 protein ; (*GB) gi|147810924|emb|CAN71786.1| (e_value=2e-26) hypothetical protein VITISV_031912 [Vitis vinifera]; NbS00029819g0002.1 protein NbS00051947g0002.1 protein NbS00016311g0004.1 protein NbS00025209g0009.1 protein NbS00022144g0002.1 protein NbS00014171g0006.1 protein ; (*GB) gi|359483606|ref|XP_002271969.2| (e_value=5e-13) PREDICTED: uncharacterized protein LOC100245196 [Vitis vinifera];; (*ITAG) Solyc02g071180.2.1 (e_value=1e-54) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00018164g0005.1 protein NbS00018164g0006.1 protein ; (*GB) gi|297738947|emb|CBI28192.3| (e_value=5e-127) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G51200.1 (e_value=6e-115) | Symbols: | Protein of unknown function (DUF3414) | chr5:20804926-20819408 FORWARD LENGTH=1838;; (*ITAG) Solyc12g006480.1.1 (e_value=2e-164) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:969890-999838 transcript_region:SL2.40ch12:969890..999838- functional_description:"Nup205 protein (Fragment) (AHRD V1 ***- Q6PDG0_MOUSE)"; NbS00018164g0008.1 protein NbS00018164g0111.1 protein NbS00018164g0113.1 protein NbS00018164g0109.1 protein NbS00027568g0006.1 protein ; (*GB) gi|147817651|emb|CAN62395.1| (e_value=3e-12) hypothetical protein VITISV_021306 [Vitis vinifera]; NbS00029372g0004.1 protein NbS00051452g0001.1 protein NbS00051452g0002.1 protein NbS00041371g0004.1 protein NbS00041371g0005.1 protein NbS00006907g0116.1 protein NbS00006907g0110.1 protein NbS00002517g0001.1 protein ; (*GB) gi|133711807|gb|ABO36625.1| (e_value=2e-14) hypothetical protein LYC_68t000010 [Solanum lycopersicum];; (*ITAG) Solyc10g079260.1.1 (e_value=3e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:60150359-60154140 transcript_region:SL2.40ch10:60150359..60154140+ go_terms:GO:0016020 functional_description:"Os06g0301100 protein (Fragment) (AHRD V1 *-*- Q0DCQ4_ORYSJ); contains Interpro domain(s) IPR005349 Uncharacterised protein family UPF0136, Transmembrane "; GO:0016020 NbS00013725g0009.1 protein ; (*GB) gi|224058199|ref|XP_002299463.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT4G23940.1 (e_value=4e-25) | Symbols: | FtsH extracellular protease family | chr4:12437108-12441841 FORWARD LENGTH=946;; (*ITAG) Solyc08g082530.2.1 (e_value=1e-30) genomic_reference:SL2.40ch08 gene_region:62451384-62458984 transcript_region:SL2.40ch08:62451384..62458984+ go_terms:GO:0006508,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 *-*- FTSH_PORPU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0006508,GO:0005524,GO:0017111,GO:0016021 NbS00034393g0002.1 protein NbS00034393g0003.1 protein NbS00034393g0005.1 protein NbS00007307g0005.1 protein ; (*GB) gi|147843467|emb|CAN82070.1| (e_value=6e-19) hypothetical protein VITISV_010010 [Vitis vinifera];; (*SWP) sp|Q9SN39|PP320_ARATH (e_value=2e-14) Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1;; (*TAIR) AT4G18750.1 (e_value=2e-15) | Symbols: DOT4 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10304850-10307465 FORWARD LENGTH=871;; (*ITAG) Solyc04g016540.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00007307g0006.1 protein ; (*ITAG) Solyc04g016540.1.1 (e_value=2e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00029447g0001.1 protein ; (*ITAG) Solyc11g012400.1.1 (e_value=1e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:5232807-5238814 transcript_region:SL2.40ch11:5232807..5238814+ go_terms:GO:0005515 functional_description:"Calcium-binding protein 39 (AHRD V1 **-* B6U5L1_MAIZE); contains Interpro domain(s) IPR013878 Mo25-like "; GO:0005515 NbS00018859g0005.1 protein ; (*GB) gi|356541479|ref|XP_003539203.1| (e_value=2e-28) PREDICTED: uncharacterized protein LOC100813608 [Glycine max];; (*TAIR) AT5G60700.1 (e_value=1e-18) | Symbols: | glycosyltransferase family protein 2 | chr5:24402329-24404729 REVERSE LENGTH=668;; (*ITAG) Solyc11g069560.1.1 (e_value=3e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00025066g0002.1 protein ; (*GB) gi|187940724|gb|ACD39463.1| (e_value=1e-34) BEL30 protein [Solanum etuberosum];; (*SWP) sp|Q9SIW1|BLH7_ARATH (e_value=2e-27) BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana GN=BLH7 PE=2 SV=1;; (*TAIR) AT2G16400.1 (e_value=1e-28) | Symbols: BLH7 | BEL1-like homeodomain 7 | chr2:7101490-7103200 REVERSE LENGTH=482;; (*ITAG) Solyc01g109980.2.1 (e_value=2e-37) genomic_reference:SL2.40ch01 gene_region:88557367-88561809 transcript_region:SL2.40ch01:88557367..88561809- go_terms:GO:0003677 functional_description:"BEL1-like homeodomain protein 6 (AHRD V1 *--- BLH6_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0003677 NbS00041772g0001.1 protein NbS00036561g0005.1 protein NbS00036561g0006.1 protein NbS00002403g0206.1 protein NbS00002403g0209.1 protein NbS00002403g0306.1 protein NbS00002403g0307.1 protein NbS00043278g0011.1 protein ; (*ITAG) Solyc00g230060.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:19613244-19614249 transcript_region:SL2.40ch00:19613244..19614249+ go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00043278g0007.1 protein NbS00012217g0001.1 protein NbS00005969g0111.1 protein NbS00005969g0109.1 protein NbS00009621g0003.1 protein NbS00011750g0002.1 protein NbS00011750g0003.1 protein NbS00011750g0004.1 protein NbS00025041g0006.1 protein NbS00003409g0004.1 protein NbS00003409g0006.1 protein ; (*ITAG) Solyc07g005700.2.1 (e_value=9e-14) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00022864g0006.1 protein NbS00000198g0001.1 protein NbS00020805g0001.1 protein NbS00010302g0004.1 protein NbS00056457g0003.1 protein NbS00052836g0002.1 protein NbS00010266g0006.1 protein NbC26086107g0001.1 protein ; (*ITAG) Solyc01g100120.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:81969682-81976667 transcript_region:SL2.40ch01:81969682..81976667- go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 ***- Q5MNW6_GOSHI); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00015169g0002.1 protein NbS00010546g0009.1 protein NbS00016520g0003.1 protein NbS00047700g0006.1 protein ; (*GB) gi|357155670|ref|XP_003577197.1| (e_value=3e-47) PREDICTED: uncharacterized protein LOC100836689 [Brachypodium distachyon]; NbS00047700g0007.1 protein ; (*GB) gi|357155670|ref|XP_003577197.1| (e_value=5e-24) PREDICTED: uncharacterized protein LOC100836689 [Brachypodium distachyon]; NbS00047117g0001.1 protein NbS00049882g0001.1 protein ; (*ITAG) Solyc09g007240.2.1 (e_value=7e-23) genomic_reference:SL2.40ch09 gene_region:842277-847642 transcript_region:SL2.40ch09:842277..847642- functional_description:"Unknown Protein (AHRD V1)"; NbS00017082g0106.1 protein NbS00028035g0005.1 protein NbS00022699g0008.1 protein NbS00039415g0003.1 protein NbS00039415g0005.1 protein NbS00004265g0008.1 protein NbS00036341g0007.1 protein ; (*GB) gi|225444205|ref|XP_002270834.1| (e_value=6e-23) PREDICTED: ribose-5-phosphate isomerase A [Vitis vinifera];; (*TAIR) AT5G44520.1 (e_value=3e-19) | Symbols: | NagB/RpiA/CoA transferase-like superfamily protein | chr5:17934610-17936441 REVERSE LENGTH=296;; (*ITAG) Solyc02g069620.2.1 (e_value=2e-33) genomic_reference:SL2.40ch02 gene_region:34035676-34038248 transcript_region:SL2.40ch02:34035676..34038248- go_terms:GO:0009052 functional_description:"Ribose 5-phosphate isomerase-like (AHRD V1 ***- Q2LC22_9ASTR); contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase "; GO:0009052 NbS00000772g0003.1 protein NbS00001947g0004.1 protein NbS00004566g0111.1 protein NbS00004566g0105.1 protein NbS00001986g0012.1 protein NbS00001986g0017.1 protein NbS00001986g0019.1 protein NbS00001986g0020.1 protein NbS00001986g0025.1 protein NbS00000310g0003.1 protein NbS00012505g0015.1 protein NbS00012505g0006.1 protein NbS00016583g0004.1 protein NbS00051343g0007.1 protein NbS00011335g0012.1 protein ; (*GB) gi|350537879|ref|NP_001234315.1| (e_value=0.0) GRAS6 protein [Solanum lycopersicum];; (*SWP) sp|Q9SDQ3|SCL1_ARATH (e_value=0.0) Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1;; (*TAIR) AT1G21450.1 (e_value=0.0) | Symbols: SCL1 | SCARECROW-like 1 | chr1:7509721-7511502 FORWARD LENGTH=593;; (*ITAG) Solyc04g064550.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:54845460-54847151 transcript_region:SL2.40ch04:54845460..54847151+ go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* B9H7M7_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00000158g0001.1 protein ; (*GB) gi|242055317|ref|XP_002456804.1| (e_value=6e-16) hypothetical protein SORBIDRAFT_03g043180 [Sorghum bicolor];; (*TAIR) AT5G14360.1 (e_value=1e-14) | Symbols: | Ubiquitin-like superfamily protein | chr5:4631038-4631641 FORWARD LENGTH=163;; (*ITAG) Solyc02g093610.2.1 (e_value=5e-19) genomic_reference:SL2.40ch02 gene_region:48985424-48986499 transcript_region:SL2.40ch02:48985424..48986499- functional_description:"BCL-2 binding anthanogene-1 (AHRD V1 ***- B6STZ6_MAIZE); contains Interpro domain(s) IPR000626 Ubiquitin "; NbS00001333g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-24) hypothetical protein [Nicotiana tabacum]; NbS00001333g0004.1 protein NbS00034908g0005.1 protein NbS00011232g0003.1 protein ; (*GB) gi|350538715|ref|NP_001234356.1| (e_value=3e-17) cullin 4 [Solanum lycopersicum];; (*ITAG) Solyc02g021470.2.1 (e_value=6e-20) genomic_reference:SL2.40ch02 gene_region:13552226-13582979 transcript_region:SL2.40ch02:13552226..13582979- go_terms:GO:0030332 functional_description:"Cullin 4 (AHRD V1 ***- A9LK40_SOLLC); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0030332 NbS00011232g0004.1 protein NbS00011232g0005.1 protein NbS00015607g0006.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00038673g0002.1 protein ; (*ITAG) Solyc08g005310.2.1 (e_value=4e-13) genomic_reference:SL2.40ch08 gene_region:235686-244594 transcript_region:SL2.40ch08:235686..244594+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00005120g0006.1 protein NbS00013928g0002.1 protein ; (*ITAG) Solyc04g007980.2.1 (e_value=4e-14) genomic_reference:SL2.40ch04 gene_region:1636283-1640787 transcript_region:SL2.40ch04:1636283..1640787+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase (AHRD V1 **-* B6SUN2_MAIZE); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00013928g0003.1 protein NbS00035369g0003.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=3e-19) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*TAIR) AT4G04650.1 (e_value=3e-16) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr4:2353989-2355213 REVERSE LENGTH=332;; (*ITAG) Solyc00g304030.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:21340396-21345343 transcript_region:SL2.40ch00:21340396..21345343+ go_terms:GO:0017111,GO:0016887 functional_description:"Macrolide export ATP-binding/permease protein MacB (AHRD V1 *-*- C5BS18_TERTT); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00035369g0005.1 protein NbS00057787g0002.1 protein ; (*GB) gi|297741117|emb|CBI31848.3| (e_value=1e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=3e-32) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=2e-33) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=3e-56) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00038492g0003.1 protein NbS00000901g0003.1 protein ; (*GB) gi|224111098|ref|XP_002315747.1| (e_value=7e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=1e-17) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=1e-18) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=1e-19) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00011948g0008.1 protein NbS00006981g0004.1 protein NbS00006981g0006.1 protein NbS00030548g0001.1 protein NbS00025579g0002.1 protein NbS00060223g0003.1 protein ; (*GB) gi|82621130|gb|ABB86253.1| (e_value=5e-66) 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum];; (*TAIR) AT2G25910.1 (e_value=1e-55) | Symbols: | 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein | chr2:11049379-11051997 REVERSE LENGTH=341;; (*ITAG) Solyc08g065880.2.1 (e_value=1e-67) genomic_reference:SL2.40ch08 gene_region:51427066-51436156 transcript_region:SL2.40ch08:51427066..51436156+ go_terms:GO:0003676,GO:0003723,GO:0005622 functional_description:"3&apos-5&apos exonuclease domain-containing protein-like (AHRD V1 **-- Q2V9B5_SOLTU); contains Interpro domain(s) IPR002562 3'-5' exonuclease "; GO:0003676,GO:0003723,GO:0005622 NbS00026420g0012.1 protein NbS00026420g0009.1 protein NbS00030323g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-32) hypothetical protein [Nicotiana tabacum]; NbS00007634g0003.1 protein NbS00001748g0010.1 protein NbS00044346g0003.1 protein NbS00013554g0013.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=3e-22) ty1-copia retrotransposon protein [Cucumis melo subsp. melo];; (*SWP) sp|Q2HXK9|RBOHD_SOLTU (e_value=6e-18) Respiratory burst oxidase homolog protein D OS=Solanum tuberosum GN=RBOHD PE=1 SV=2;; (*ITAG) Solyc06g068680.2.1 (e_value=9e-21) genomic_reference:SL2.40ch06 gene_region:38967784-38973268 transcript_region:SL2.40ch06:38967784..38973268+ go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00016977g0011.1 protein ; (*GB) gi|359477536|ref|XP_003631992.1| (e_value=1e-22) PREDICTED: uncharacterized N-acetyltransferase p20 [Vitis vinifera];; (*TAIR) AT2G32030.1 (e_value=2e-17) | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily protein | chr2:13632675-13633241 REVERSE LENGTH=188;; (*ITAG) Solyc06g054090.1.1 (e_value=7e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:33417119-33417700 transcript_region:SL2.40ch06:33417119..33417700- go_terms:GO:0008999 functional_description:"Ribosomal-protein-alanine N-acetyltransferase (AHRD V1 **** D3FS71_BACPE); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008999 NbS00013002g0007.1 protein ; (*ITAG) Solyc08g008550.2.1 (e_value=6e-15) genomic_reference:SL2.40ch08 gene_region:2932902-2942562 transcript_region:SL2.40ch08:2932902..2942562- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00028391g0108.1 protein NbS00028391g0109.1 protein NbS00033556g0008.1 protein NbS00057777g0001.1 protein NbS00007896g0002.1 protein NbS00029914g0003.1 protein NbS00034833g0006.1 protein NbS00035418g0002.1 protein ; (*GB) gi|225427268|ref|XP_002281297.1| (e_value=2e-39) PREDICTED: AP-2 complex subunit mu [Vitis vinifera];; (*TAIR) AT5G46630.1 (e_value=2e-39) | Symbols: | Clathrin adaptor complexes medium subunit family protein | chr5:18920580-18923252 FORWARD LENGTH=438;; (*ITAG) Solyc06g061150.2.1 (e_value=8e-42) genomic_reference:SL2.40ch06 gene_region:35536609-35549278 transcript_region:SL2.40ch06:35536609..35549278+ go_terms:GO:0030276 functional_description:"AP-2 complex subunit mu (AHRD V1 ***- B6TIQ4_MAIZE); contains Interpro domain(s) IPR015629 Clathrin coat associated protein AP-50 "; GO:0030276 NbS00016621g0005.1 protein ; (*ITAG) Solyc07g049250.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56846363-56847250 transcript_region:SL2.40ch07:56846363..56847250- go_terms:GO:0005634 functional_description:"Histone deacetylase complex SIN3 component (AHRD V1 *-*- A9TE35_PHYPA); contains Interpro domain(s) IPR003822 Paired amphipathic helix "; GO:0005634 NbS00014839g0003.1 protein ; (*GB) gi|332322087|emb|CCA65979.1| (e_value=3e-29) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=8e-15) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00010791g0004.1 protein NbS00028906g0003.1 protein ; (*TAIR) AT5G48520.1 (e_value=5e-14) | Symbols: | unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | chr5:19661407-19666147 FORWARD LENGTH=617;; (*ITAG) Solyc06g083090.2.1 (e_value=2e-16) genomic_reference:SL2.40ch06 gene_region:44925081-44937173 transcript_region:SL2.40ch06:44925081..44937173- functional_description:"HAUS augmin-like complex subunit 3 (AHRD V1 *--- HAUS3_HUMAN)"; NbS00012694g0006.1 protein NbS00049890g0003.1 protein ; (*GB) gi|224073084|ref|XP_002303964.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06120.2 (e_value=2e-22) | Symbols: | ARM repeat superfamily protein | chr5:1845309-1852601 FORWARD LENGTH=1052;; (*ITAG) Solyc01g056520.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00035825g0005.1 protein NbS00011482g0008.1 protein NbS00026728g0006.1 protein NbS00026728g0007.1 protein NbS00055702g0003.1 protein ; (*GB) gi|31745675|gb|AAP56262.1| (e_value=6e-24) PSII D2 [Pyrus communis];; (*SWP) sp|A7Y3C4|PSBD_IPOPU (e_value=2e-24) Photosystem II D2 protein OS=Ipomoea purpurea GN=psbD PE=3 SV=1;; (*ITAG) ATCG00270.1 (e_value=1e-24) | Symbols: PSBD | photosystem II reaction center protein D | chrC:32711-33772 FORWARD LENGTH=353;; (*ITAG) Solyc09g055950.1.1 (e_value=9e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:41860254-41860756 transcript_region:SL2.40ch09:41860254..41860756+ go_terms:GO:0030077 functional_description:"Photosystem II D2 protein (AHRD V1 ***- D3WE71_9MAGN); contains Interpro domain(s) IPR000484 Photosynthetic reaction centre, L/M "; GO:0030077 NbS00036840g0003.1 protein NbS00039001g0002.1 protein NbS00012871g0003.1 protein ; (*GB) gi|147853458|emb|CAN80201.1| (e_value=2e-30) hypothetical protein VITISV_038543 [Vitis vinifera]; NbC23662598g0001.1 protein ; (*GB) gi|225426218|ref|XP_002263667.1| (e_value=3e-21) PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera];; (*ITAG) Solyc08g082880.2.1 (e_value=7e-30) genomic_reference:SL2.40ch08 gene_region:62705443-62710758 transcript_region:SL2.40ch08:62705443..62710758+ go_terms:GO:0006412,GO:0005507 functional_description:"Ribosomal small subunit Rsm22 (AHRD V1 *-*- D9TLZ5_CLOTS); contains Interpro domain(s) IPR015324 Ribosomal protein Rsm22, bacterial-type "; GO:0006412,GO:0005507 NbS00006080g0011.1 protein NbS00006080g0006.1 protein NbS00006080g0009.1 protein NbS00006080g0010.1 protein NbS00000596g0002.1 protein ; (*GB) gi|356541316|ref|XP_003539124.1| (e_value=8e-20) PREDICTED: elongation factor G, mitochondrial-like [Glycine max];; (*SWP) sp|Q9C641|EFGM_ARATH (e_value=2e-18) Elongation factor G, mitochondrial OS=Arabidopsis thaliana GN=At1g45332 PE=1 SV=1;; (*TAIR) AT1G45332.1 (e_value=2e-19) | Symbols: | Translation elongation factor EFG/EF2 protein | chr1:17172507-17176683 REVERSE LENGTH=754;; (*ITAG) Solyc01g090690.2.1 (e_value=5e-23) genomic_reference:SL2.40ch01 gene_region:76088526-76099238 transcript_region:SL2.40ch01:76088526..76099238+ go_terms:GO:0005525,GO:0005622 functional_description:"Elongation factor G (AHRD V1 ***- B0SNI8_LEPBP); contains Interpro domain(s) IPR004540 Translation elongation factor EFG/EF2 "; GO:0005525,GO:0005622 NbS00006092g0007.1 protein ; (*GB) gi|255540447|ref|XP_002511288.1| (e_value=3e-36) hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis];; (*SWP) sp|Q94A08|RFS2_ARATH (e_value=3e-29) Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2;; (*TAIR) AT3G57520.3 (e_value=7e-31) | Symbols: AtSIP2, SIP2 | seed imbibition 2 | chr3:21289725-21292694 REVERSE LENGTH=565;; (*ITAG) Solyc07g065980.2.1 (e_value=8e-32) genomic_reference:SL2.40ch07 gene_region:64766853-64771778 transcript_region:SL2.40ch07:64766853..64771778+ go_terms:GO:0004553 functional_description:"Alkaline alpha galactosidase I (AHRD V1 **-- Q3Y5A3_CUCSA); contains Interpro domain(s) IPR008811 Raffinose synthase "; GO:0004553 NbS00045231g0001.1 protein NbS00045231g0002.1 protein NbS00005265g0004.1 protein ; (*ITAG) Solyc03g118070.2.1 (e_value=1e-16) genomic_reference:SL2.40ch03 gene_region:61101249-61108353 transcript_region:SL2.40ch03:61101249..61108353+ go_terms:GO:0005515,GO:0030295 functional_description:"5&apos-AMP-activated protein kinase gamma-1 subunit (AHRD V1 **** Q1M178_ONCMY); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; GO:0005515,GO:0030295 NbS00002042g0004.1 protein NbS00024156g0004.1 protein ; (*ITAG) Solyc02g043820.1.1 (e_value=6e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024156g0008.1 protein ; (*GB) gi|147827062|emb|CAN70877.1| (e_value=7e-25) hypothetical protein VITISV_032969 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=4e-21) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G38300.1 (e_value=2e-23) | Symbols: | myb-like HTH transcriptional regulator family protein | chr2:16044175-16045679 REVERSE LENGTH=340;; (*ITAG) Solyc12g006280.1.1 (e_value=3e-30) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:796674-800864 transcript_region:SL2.40ch12:796674..800864+ go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein (AHRD V1 *--- Q7XCL9_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00022834g0002.1 protein NbS00023211g0004.1 protein NbS00044696g0004.1 protein ; (*ITAG) Solyc05g021350.1.1 (e_value=8e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00041800g0007.1 protein NbS00041800g0008.1 protein NbS00014872g0005.1 protein ; (*GB) gi|3023261|sp|O04931.1|AGLU_BETVU (e_value=8e-19) RecName: Full=Alpha-glucosidase; AltName: Full=Maltase; Flags: Precursor;; (*SWP) sp|O04931|AGLU_BETVU (e_value=2e-20) Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1;; (*TAIR) AT5G11720.1 (e_value=2e-17) | Symbols: | Glycosyl hydrolases family 31 protein | chr5:3776840-3780025 FORWARD LENGTH=902;; (*ITAG) Solyc04g009630.2.1 (e_value=2e-25) genomic_reference:SL2.40ch04 gene_region:3009140-3012779 transcript_region:SL2.40ch04:3009140..3012779+ go_terms:GO:0004558 functional_description:"Alpha-glucosidase 1 (AHRD V1 **** O22444_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00014872g0008.1 protein NbS00004768g0001.1 protein NbS00002272g0006.1 protein ; (*GB) gi|357134191|ref|XP_003568701.1| (e_value=2e-17) PREDICTED: uncharacterized protein LOC100833688 [Brachypodium distachyon]; NbS00002272g0106.1 protein NbS00046273g0007.1 protein NbS00049005g0001.1 protein NbS00031433g0004.1 protein NbS00031433g0006.1 protein NbS00027502g0002.1 protein ; (*GB) gi|359493189|ref|XP_002265243.2| (e_value=9e-14) PREDICTED: protein SET DOMAIN GROUP 41-like [Vitis vinifera];; (*ITAG) Solyc04g071570.2.1 (e_value=3e-45) genomic_reference:SL2.40ch04 gene_region:56137531-56141651 transcript_region:SL2.40ch04:56137531..56141651+ functional_description:"Protein SET DOMAIN GROUP 41 (AHRD V1 ***- SDG41_ARATH); contains Interpro domain(s) IPR001214 SET "; NbS00031999g0002.1 protein ; (*GB) gi|1711509|sp|P49971.1|SR541_SOLLC (e_value=6e-23) RecName: Full=Signal recognition particle 54 kDa protein 1; Short=SRP54;; (*SWP) sp|P49971|SR541_SOLLC (e_value=2e-24) Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1;; (*TAIR) AT1G48900.2 (e_value=6e-22) | Symbols: | Signal recognition particle, SRP54 subunit protein | chr1:18085031-18087743 REVERSE LENGTH=431;; (*ITAG) Solyc03g116810.2.1 (e_value=7e-24) genomic_reference:SL2.40ch03 gene_region:60127221-60135170 transcript_region:SL2.40ch03:60127221..60135170+ go_terms:GO:0008312 functional_description:"Signal recognition particle protein 3 (AHRD V1 ***- D7KD74_ARALY); contains Interpro domain(s) IPR006325 Signal recognition particle, SRP54 subunit "; GO:0008312 NbS00000420g0202.1 protein NbS00000205g0005.1 protein NbS00019984g0009.1 protein NbS00002156g0001.1 protein ; (*GB) gi|225441137|ref|XP_002266164.1| (e_value=5e-31) PREDICTED: protein fluG-like [Vitis vinifera];; (*TAIR) AT3G53180.1 (e_value=2e-31) | Symbols: | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases | chr3:19707068-19711188 FORWARD LENGTH=852;; (*ITAG) Solyc10g083850.1.1 (e_value=2e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:62909020-62916394 transcript_region:SL2.40ch10:62909020..62916394- go_terms:GO:0008152,GO:0006807,GO:0003824 functional_description:"Glutamine synthetase I (AHRD V1 *-*- Q9SC91_MEDTR); contains Interpro domain(s) IPR008146 Glutamine synthetase, catalytic region "; GO:0008152,GO:0006807,GO:0003824 NbS00002156g0002.1 protein NbS00012344g0111.1 protein NbS00012344g0105.1 protein NbS00012344g0108.1 protein NbS00048231g0003.1 protein NbS00013005g0001.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=5e-19) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=9e-17) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00013005g0002.1 protein NbS00013005g0106.1 protein NbS00013005g0107.1 protein NbS00041131g0006.1 protein NbS00041131g0008.1 protein NbS00021161g0003.1 protein NbS00021161g0004.1 protein NbS00043715g0002.1 protein NbS00033391g0004.1 protein NbS00025676g0007.1 protein NbS00021675g0003.1 protein ; (*GB) gi|297734157|emb|CBI15404.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G18560.1 (e_value=3e-27) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr1:6385614-6388005 FORWARD LENGTH=690;; (*ITAG) Solyc03g119830.2.1 (e_value=3e-38) genomic_reference:SL2.40ch03 gene_region:62445233-62448653 transcript_region:SL2.40ch03:62445233..62448653- go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 **-- Q10P19_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00021675g0006.1 protein NbS00025206g0010.1 protein NbS00012113g0005.1 protein NbS00027061g0106.1 protein NbS00004043g0004.1 protein NbS00004043g0005.1 protein NbS00031242g0102.1 protein NbS00013482g0004.1 protein NbS00009041g0011.1 protein NbS00049424g0004.1 protein NbS00003283g0002.1 protein NbS00010101g0007.1 protein NbS00010101g0010.1 protein NbS00019520g0003.1 protein NbS00023237g0003.1 protein NbS00012794g0002.1 protein NbS00034237g0008.1 protein NbS00034237g0009.1 protein NbS00034237g0010.1 protein NbC23661338g0001.1 protein ; (*GB) gi|15223613|ref|NP_175481.1| (e_value=1e-24) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G50660.1 (e_value=3e-27) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). | chr1:18771386-18774385 FORWARD LENGTH=725;; (*ITAG) Solyc07g064580.2.1 (e_value=7e-30) genomic_reference:SL2.40ch07 gene_region:63884910-63888157 transcript_region:SL2.40ch07:63884910..63888157+ functional_description:"Os04g0625000 protein (Fragment) (AHRD V1 *-*- Q0J9Y7_ORYSJ)"; NbS00007824g0003.1 protein NbS00007824g0004.1 protein NbS00030741g0004.1 protein NbS00030741g0005.1 protein NbS00054986g0004.1 protein NbS00054986g0005.1 protein NbS00054986g0006.1 protein NbS00034347g0006.1 protein NbS00026899g0006.1 protein ; (*GB) gi|255561367|ref|XP_002521694.1| (e_value=2e-36) Adipocyte plasma membrane-associated protein, putative [Ricinus communis];; (*TAIR) AT3G51420.1 (e_value=7e-34) | Symbols: SSL4, ATSSL4 | strictosidine synthase-like 4 | chr3:19084082-19085451 FORWARD LENGTH=370;; (*ITAG) Solyc02g082900.2.1 (e_value=3e-47) genomic_reference:SL2.40ch02 gene_region:41109528-41112540 transcript_region:SL2.40ch02:41109528..41112540- go_terms:GO:0005515,GO:0004064 functional_description:"Strictosidine synthase family protein (AHRD V1 **-- D7LTU8_ARALY); contains Interpro domain(s) IPR004141 Strictosidine synthase "; GO:0005515,GO:0004064 NbS00025271g0001.1 protein NbS00000936g0002.1 protein NbS00044748g0002.1 protein ; (*GB) gi|8778360|gb|AAF79368.1|AC007887_27 (e_value=5e-29) F15O4.40 [Arabidopsis thaliana];; (*SWP) sp|Q8IYD8|FANCM_HUMAN (e_value=5e-16) Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2;; (*TAIR) AT1G35530.2 (e_value=4e-31) | Symbols: | DEAD/DEAH box RNA helicase family protein | chr1:13089994-13097078 FORWARD LENGTH=1390;; (*ITAG) Solyc11g020750.1.1 (e_value=3e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:11957851-11964211 transcript_region:SL2.40ch11:11957851..11964211+ go_terms:GO:0008026 functional_description:"ATP-dependent DNA helicase MPH1 (AHRD V1 ***- C5JQI1_AJEDS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026 NbS00019481g0003.1 protein NbS00010400g0002.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=3e-13) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g048470.1.1 (e_value=7e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:40107185-40110627 transcript_region:SL2.40ch08:40107185..40110627- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbC26332476g0002.1 protein NbC26332476g0003.1 protein NbS00057400g0004.1 protein NbS00036215g0002.1 protein NbS00029496g0006.1 protein NbS00029496g0007.1 protein NbS00035557g0008.1 protein NbS00028213g0005.1 protein NbS00013986g0001.1 protein NbS00042416g0007.1 protein ; (*GB) gi|225455571|ref|XP_002268371.1| (e_value=0.0) PREDICTED: cleavage and polyadenylation specificity factor subunit 1-like [Vitis vinifera];; (*SWP) sp|Q9FGR0|CPSF1_ARATH (e_value=0.0) Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana GN=CPSF160 PE=1 SV=2;; (*TAIR) AT5G51660.1 (e_value=0.0) | Symbols: CPSF160, ATCPSF160 | cleavage and polyadenylation specificity factor 160 | chr5:20980250-20989268 FORWARD LENGTH=1442;; (*ITAG) Solyc03g007100.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:1662107-1701529 transcript_region:SL2.40ch03:1662107..1701529- go_terms:GO:0005515,GO:0003730 functional_description:"Cleavage and polyadenylation specificity factor subunit A (AHRD V1 *--- C1H240_PARBA); contains Interpro domain(s) IPR004871 Cleavage and polyadenylation specificity factor, A subunit, C-terminal "; GO:0005515,GO:0003730 NbS00010683g0007.1 protein NbS00007271g0004.1 protein NbS00037173g0001.1 protein NbS00037173g0002.1 protein NbS00008536g0004.1 protein NbS00008536g0006.1 protein ; (*GB) gi|224132668|ref|XP_002321379.1| (e_value=4e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q7ZZ25|ATD1A_DANRE (e_value=7e-14) ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2;; (*TAIR) AT4G27680.1 (e_value=4e-26) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:13821263-13823083 FORWARD LENGTH=398;; (*ITAG) Solyc06g053160.2.1 (e_value=2e-27) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- go_terms:GO:0042623 functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0042623 NbS00013014g0107.1 protein NbS00013014g0108.1 protein NbS00012669g0003.1 protein NbS00017944g0003.1 protein ; (*GB) gi|224060018|ref|XP_002300029.1| (e_value=8e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT3G28370.1 (e_value=8e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). | chr3:10620627-10623259 FORWARD LENGTH=292;; (*ITAG) Solyc02g087420.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:44453556-44456360 transcript_region:SL2.40ch02:44453556..44456360+ functional_description:"Genomic DNA chromosome 3 P1 clone MFJ20 (AHRD V1 ***- Q9LSJ7_ARATH)"; NbS00017944g0004.1 protein NbS00033284g0002.1 protein NbS00033284g0003.1 protein ; (*GB) gi|359492139|ref|XP_002285889.2| (e_value=6e-28) PREDICTED: probable methyltransferase PMT26-like [Vitis vinifera];; (*SWP) sp|Q6NPR7|PMTO_ARATH (e_value=6e-29) Probable methyltransferase PMT24 OS=Arabidopsis thaliana GN=At1g29470 PE=1 SV=1;; (*TAIR) AT1G29470.2 (e_value=4e-30) | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:10310424-10313369 REVERSE LENGTH=770;; (*ITAG) Solyc04g063230.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:54489487-54494561 transcript_region:SL2.40ch04:54489487..54494561- functional_description:"Dehydration-responsive family protein (AHRD V1 **-- D7LF23_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; NbS00033284g0004.1 protein ; (*GB) gi|225459695|ref|XP_002284680.1| (e_value=3e-16) PREDICTED: uncharacterized protein LOC100245343 [Vitis vinifera]; NbS00025600g0001.1 protein NbS00050327g0001.1 protein NbS00040544g0002.1 protein NbS00055777g0003.1 protein NbS00055777g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-37) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00003261g0105.1 protein NbS00037347g0002.1 protein NbS00037128g0002.1 protein NbS00061108g0002.1 protein ; (*GB) gi|357457339|ref|XP_003598950.1| (e_value=0.0) Activating signal cointegrator 1 complex subunit [Medicago truncatula];; (*SWP) sp|E1BNG3|ASCC3_BOVIN (e_value=9e-131) Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1;; (*TAIR) AT5G61140.1 (e_value=0.0) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2146;; (*ITAG) Solyc06g069480.2.1 (e_value=3e-173) genomic_reference:SL2.40ch06 gene_region:39617598-39646906 transcript_region:SL2.40ch06:39617598..39646906+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00012018g0001.1 protein ; (*GB) gi|222820580|gb|ACM67640.1| (e_value=4e-48) BTB-POZ and MATH domain protein [Capsicum annuum];; (*SWP) sp|Q1EBV6|BPM5_ARATH (e_value=3e-43) BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana GN=BPM5 PE=1 SV=1;; (*TAIR) AT5G21010.1 (e_value=2e-44) | Symbols: ATBPM5, BPM5 | BTB-POZ and MATH domain 5 | chr5:7136062-7138374 FORWARD LENGTH=410;; (*ITAG) Solyc11g072070.1.1 (e_value=4e-61) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52429101-52436697 transcript_region:SL2.40ch11:52429101..52436697- go_terms:GO:0042802 functional_description:"BTB/POZ domain containing protein expressed (AHRD V1 ***- Q10C73_ORYSJ); contains Interpro domain(s) IPR013089 Kelch related "; GO:0042802 NbS00012018g0102.1 protein NbS00012018g0103.1 protein NbS00014482g0002.1 protein NbS00004661g0002.1 protein NbS00004661g0004.1 protein NbS00004661g0005.1 protein NbS00023490g0102.1 protein NbS00041980g0003.1 protein NbS00017924g0011.1 protein ; (*GB) gi|147840892|emb|CAN66506.1| (e_value=9e-13) hypothetical protein VITISV_035499 [Vitis vinifera];; (*ITAG) Solyc04g015300.2.1 (e_value=9e-35) genomic_reference:SL2.40ch04 gene_region:5497992-5508593 transcript_region:SL2.40ch04:5497992..5508593- functional_description:"Alpha/beta hydrolase (AHRD V1 *--- C4IIG9_CLOBU); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; NbS00017924g0012.1 protein NbS00012122g0004.1 protein NbS00008385g0004.1 protein NbS00024414g0004.1 protein ; (*ITAG) Solyc03g114390.1.1 (e_value=2e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:58443482-58444315 transcript_region:SL2.40ch03:58443482..58444315- functional_description:"Plant-specific domain TIGR01570 family protein (AHRD V1 ***- B6U2A5_MAIZE); contains Interpro domain(s) IPR006460 Protein of unknown function DUF617, plant "; NbS00000288g0002.1 protein ; (*ITAG) Solyc07g061750.2.1 (e_value=5e-18) genomic_reference:SL2.40ch07 gene_region:61932745-61935454 transcript_region:SL2.40ch07:61932745..61935454+ go_terms:GO:0005515 functional_description:"Ankyrin repeat family protein-like (AHRD V1 **-- Q6ERI3_ORYSJ); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00027691g0004.1 protein NbS00029838g0006.1 protein NbS00010275g0003.1 protein NbS00052183g0006.1 protein NbS00009656g0002.1 protein NbS00017625g0202.1 protein NbS00028641g0005.1 protein NbS00028641g0008.1 protein NbS00001654g0003.1 protein NbS00025662g0004.1 protein NbS00013100g0003.1 protein NbS00013100g0005.1 protein NbC25663356g0002.1 protein NbS00006351g0013.1 protein NbS00006351g0007.1 protein NbS00012142g0005.1 protein NbS00032449g0001.1 protein NbS00032449g0105.1 protein NbS00035481g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-12) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00009432g0003.1 protein NbS00031448g0005.1 protein NbS00008980g0006.1 protein NbS00027354g0007.1 protein NbS00007156g0002.1 protein NbS00016760g0002.1 protein NbS00057080g0005.1 protein NbS00014987g0004.1 protein NbS00014987g0105.1 protein NbS00023846g0003.1 protein ; (*ITAG) Solyc11g010590.1.1 (e_value=6e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3654334-3657271 transcript_region:SL2.40ch11:3654334..3657271- functional_description:"Protein-tyrosine phosphatase-like member A (AHRD V1 ***- PTPLA_MOUSE); contains Interpro domain(s) IPR007482 Protein-tyrosine phosphatase-like, PTPLA "; NbS00003763g0008.1 protein NbS00047800g0006.1 protein NbS00003975g0001.1 protein NbS00016909g0014.1 protein NbS00016909g0009.1 protein ; (*GB) gi|296088588|emb|CBI37579.3| (e_value=1e-25) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc11g005630.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:483096-485429 transcript_region:SL2.40ch11:483096..485429+ go_terms:GO:0005529,GO:0006468 functional_description:"Receptor-like protein kinase (AHRD V1 ***- Q39202_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005529,GO:0006468 NbS00016909g0010.1 protein ; (*GB) gi|356504613|ref|XP_003521090.1| (e_value=3e-18) PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max];; (*TAIR) AT1G02080.1 (e_value=1e-12) | Symbols: | transcription regulators | chr1:373335-386682 FORWARD LENGTH=2431;; (*ITAG) Solyc01g090780.2.1 (e_value=4e-29) genomic_reference:SL2.40ch01 gene_region:76194068-76219340 transcript_region:SL2.40ch01:76194068..76219340+ go_terms:GO:0005515,GO:0017163 functional_description:"Ccr4-Not transcription complex subunit (AHRD V1 *--* C5G9N0_AJEDR); contains Interpro domain(s) IPR007196 CCR4-Not complex component, Not1 "; GO:0005515,GO:0017163 NbS00027628g0002.1 protein NbC26086523g0001.1 protein ; (*GB) gi|255586445|ref|XP_002533867.1| (e_value=3e-47) ATP binding protein, putative [Ricinus communis];; (*SWP) sp|Q6ICW6|WNK11_ARATH (e_value=1e-42) Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1;; (*TAIR) AT5G55560.1 (e_value=9e-44) | Symbols: | Protein kinase superfamily protein | chr5:22506477-22507757 REVERSE LENGTH=314;; (*ITAG) Solyc07g047990.1.1 (e_value=4e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:56521372-56522845 transcript_region:SL2.40ch07:56521372..56522845+ go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 ***- D0NNA3_PHYIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00019648g0003.1 protein NbS00019648g0004.1 protein NbS00029488g0013.1 protein ; (*ITAG) Solyc07g064120.1.1 (e_value=5e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63619807-63625362 transcript_region:SL2.40ch07:63619807..63625362+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_CHRVO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00029488g0006.1 protein NbS00045605g0004.1 protein ; (*ITAG) Solyc11g006340.1.1 (e_value=6e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00003006g0003.1 protein NbS00003006g0004.1 protein NbS00030883g0006.1 protein NbS00009566g0003.1 protein NbS00010731g0104.1 protein NbS00010731g0106.1 protein NbS00004171g0009.1 protein ; (*ITAG) Solyc03g005350.2.1 (e_value=3e-15) genomic_reference:SL2.40ch03 gene_region:204741-210152 transcript_region:SL2.40ch03:204741..210152+ go_terms:GO:0003700 functional_description:"BHLH transcription factor (AHRD V1 **** B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00004171g0010.1 protein ; (*GB) gi|135258|sp|P24804|TA29_TOBAC (e_value=5e-30) Anther-specific protein TA-29;; (*SWP) sp|P24804|TA29_TOBAC (e_value=2e-31) Anther-specific protein TA-29 OS=Nicotiana tabacum GN=TA-29 PE=2 SV=1;; (*ITAG) Solyc02g078370.1.1 (e_value=3e-11) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:37660706-37661650 transcript_region:SL2.40ch02:37660706..37661650+ functional_description:"Anther-specific protein TA-29 (AHRD V1 ***- TA29_TOBAC)"; NbS00031890g0015.1 protein NbS00031890g0008.1 protein NbS00051434g0005.1 protein NbS00051434g0009.1 protein NbS00012311g0011.1 protein ; (*GB) gi|357485679|ref|XP_003613127.1| (e_value=2e-17) 60S ribosomal protein L27a-3 [Medicago truncatula];; (*SWP) sp|P49637|R27A3_ARATH (e_value=3e-18) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=2e-19) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc03g112360.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56836935-56837381 transcript_region:SL2.40ch03:56836935..56837381+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00012311g0006.1 protein NbS00028475g0007.1 protein NbC23392052g0001.1 protein ; (*GB) gi|224063780|ref|XP_002301280.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LPC1|GAE2_ARATH (e_value=1e-37) UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1;; (*TAIR) AT1G02000.1 (e_value=1e-38) | Symbols: GAE2 | UDP-D-glucuronate 4-epimerase 2 | chr1:346052-347356 FORWARD LENGTH=434;; (*ITAG) Solyc08g079440.1.1 (e_value=2e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:60129988-60131325 transcript_region:SL2.40ch08:60129988..60131325+ go_terms:GO:0050378,GO:0048040 functional_description:"UDP-D-glucuronate 4-epimerase 2 (AHRD V1 **** D7KP52_ARALY); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0050378,GO:0048040 NbS00000154g0001.1 protein NbS00006225g0003.1 protein NbS00006225g0006.1 protein NbS00006225g0007.1 protein NbC23832679g0001.1 protein ; (*GB) gi|225430590|ref|XP_002265288.1| (e_value=4e-37) PREDICTED: 60S ribosomal export protein NMD3-like [Vitis vinifera];; (*SWP) sp|Q55BF2|NMD3_DICDI (e_value=2e-23) 60S ribosomal export protein NMD3 OS=Dictyostelium discoideum GN=nmd3 PE=3 SV=1;; (*TAIR) AT2G03820.1 (e_value=5e-33) | Symbols: | nonsense-mediated mRNA decay NMD3 family protein | chr2:1165149-1166699 REVERSE LENGTH=516;; (*ITAG) Solyc06g053800.1.1 (e_value=4e-40) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:33148340-33149857 transcript_region:SL2.40ch06:33148340..33149857- go_terms:GO:0005515,GO:0043023 functional_description:"Nonsense-mediated mRNA decay NMD3 family protein (AHRD V1 **-- D7LQL6_ARALY); contains Interpro domain(s) IPR007064 NMD3 "; GO:0005515,GO:0043023 NbS00030488g0001.1 protein NbS00030488g0002.1 protein NbS00042536g0002.1 protein NbS00021628g0009.1 protein NbS00021628g0010.1 protein ; (*ITAG) Solyc00g058280.1.1 (e_value=8e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:14036744-14037773 transcript_region:SL2.40ch00:14036744..14037773- functional_description:"Unknown Protein (AHRD V1)"; NbS00040330g0003.1 protein ; (*GB) gi|255567758|ref|XP_002524857.1| (e_value=2e-21) catalytic, putative [Ricinus communis];; (*TAIR) AT5G10460.1 (e_value=7e-19) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:3287822-3289844 FORWARD LENGTH=306;; (*ITAG) Solyc12g038820.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:36481364-36482116 transcript_region:SL2.40ch12:36481364..36482116+ go_terms:GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IIA (AHRD V1 ***- B6TMM7_MAIZE); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0008152 NbS00009855g0004.1 protein NbS00000428g0001.1 protein NbS00022598g0007.1 protein NbS00059429g0002.1 protein ; (*ITAG) Solyc01g020460.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:30938856-30942232 transcript_region:SL2.40ch01:30938856..30942232- go_terms:GO:0005840 functional_description:"ORF65d (AHRD V1 *-*- A4QMH1_PINKO); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00020383g0007.1 protein NbS00060918g0003.1 protein NbS00007321g0006.1 protein NbS00020062g0009.1 protein NbS00040925g0003.1 protein NbS00040925g0004.1 protein NbS00040925g0005.1 protein NbS00020071g0001.1 protein NbS00007070g0003.1 protein NbS00007070g0208.1 protein NbS00038670g0002.1 protein NbS00019932g0005.1 protein NbS00030110g0002.1 protein NbC23545902g0002.1 protein ; (*GB) gi|237664619|gb|ACR09748.1| (e_value=2e-25) DIV3B protein [Heptacodium miconioides];; (*TAIR) AT2G38090.1 (e_value=3e-24) | Symbols: | Duplicated homeodomain-like superfamily protein | chr2:15945278-15946775 FORWARD LENGTH=298;; (*ITAG) Solyc09g014250.2.1 (e_value=3e-35) genomic_reference:SL2.40ch09 gene_region:5739857-5741930 transcript_region:SL2.40ch09:5739857..5741930+ go_terms:GO:0003700 functional_description:"Myb family transcription factor (Fragment) (AHRD V1 **-* D7M1F0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00004331g0007.1 protein NbS00017161g0005.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=2e-18) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00026918g0012.1 protein NbS00026918g0017.1 protein NbS00027936g0009.1 protein NbS00023235g0002.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=1e-15) predicted protein [Populus trichocarpa]; NbS00030251g0011.1 protein NbS00030251g0005.1 protein NbS00030251g0009.1 protein NbS00030251g0107.1 protein NbS00011867g0003.1 protein ; (*GB) gi|356575783|ref|XP_003556016.1| (e_value=5e-19) PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 4 [Glycine max];; (*SWP) sp|O65468|CRK8_ARATH (e_value=1e-14) Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2;; (*TAIR) AT4G23140.1 (e_value=1e-15) | Symbols: CRK6 | cysteine-rich RLK (RECEPTOR-like protein kinase) 6 | chr4:12121397-12124037 FORWARD LENGTH=674;; (*ITAG) Solyc12g087920.1.1 (e_value=1e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61872727-61876078 transcript_region:SL2.40ch12:61872727..61876078- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00009700g0002.1 protein NbS00009700g0003.1 protein NbC24968109g0001.1 protein ; (*GB) gi|225429460|ref|XP_002277333.1| (e_value=6e-24) PREDICTED: uncharacterized protein LOC100267911 [Vitis vinifera];; (*TAIR) AT4G29480.1 (e_value=1e-24) | Symbols: | Mitochondrial ATP synthase subunit G protein | chr4:14486265-14487257 REVERSE LENGTH=122;; (*ITAG) Solyc08g065470.2.1 (e_value=2e-35) genomic_reference:SL2.40ch08 gene_region:50793610-50795280 transcript_region:SL2.40ch08:50793610..50795280+ go_terms:GO:0000276 functional_description:"Mitochondrial ATP synthase g subunit family protein (AHRD V1 ***- Q1EP47_MUSBA); contains Interpro domain(s) IPR006808 ATPase, F0 complex, subunit G, mitochondrial "; GO:0000276 NbS00000773g0006.1 protein NbS00000773g0009.1 protein NbS00006180g0008.1 protein NbS00019459g0005.1 protein NbS00032593g0001.1 protein NbS00000857g0006.1 protein NbS00043005g0002.1 protein ; (*GB) gi|147802842|emb|CAN75152.1| (e_value=5e-12) hypothetical protein VITISV_035993 [Vitis vinifera];; (*ITAG) Solyc07g021540.2.1 (e_value=2e-18) genomic_reference:SL2.40ch07 gene_region:19310213-19316385 transcript_region:SL2.40ch07:19310213..19316385- functional_description:"FIP1 (AHRD V1 **-- B6TPG9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00043005g0004.1 protein NbS00029525g0003.1 protein NbS00046710g0008.1 protein NbS00043300g0003.1 protein NbS00001271g0005.1 protein ; (*GB) gi|388507532|gb|AFK41832.1| (e_value=4e-18) unknown [Medicago truncatula]; NbS00052177g0002.1 protein ; (*GB) gi|302141847|emb|CBI19050.3| (e_value=9e-78) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8CI75|DI3L2_MOUSE (e_value=6e-25) DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1;; (*TAIR) AT1G77680.1 (e_value=3e-66) | Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055;; (*ITAG) Solyc11g013030.1.1 (e_value=4e-106) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:5889556-5897829 transcript_region:SL2.40ch11:5889556..5897829- go_terms:GO:0004540 functional_description:"Exoribonuclease R (AHRD V1 *--- C2FY16_9SPHI); contains Interpro domain(s) IPR001900 Ribonuclease II and R "; GO:0004540 NbS00006286g0004.1 protein NbS00010951g0007.1 protein NbS00041483g0003.1 protein NbS00040229g0110.1 protein NbS00030868g0002.1 protein NbS00030868g0003.1 protein NbS00010315g0011.1 protein NbS00010315g0012.1 protein NbS00027604g0004.1 protein NbS00032613g0003.1 protein NbC23990513g0001.1 protein ; (*GB) gi|224089911|ref|XP_002308863.1| (e_value=6e-55) predicted protein [Populus trichocarpa];; (*SWP) sp|O22207|UBP5_ARATH (e_value=2e-53) Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2;; (*TAIR) AT2G40930.1 (e_value=1e-54) | Symbols: UBP5, ATUBP5, PDE323 | ubiquitin-specific protease 5 | chr2:17076714-17082192 REVERSE LENGTH=924;; (*ITAG) Solyc09g019970.2.1 (e_value=4e-60) genomic_reference:SL2.40ch09 gene_region:17868711-17884051 transcript_region:SL2.40ch09:17868711..17884051+ go_terms:GO:0004843,GO:0004197 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9HDU9_POPTR); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0004197 NbS00015100g0004.1 protein NbS00005282g0012.1 protein NbS00005282g0006.1 protein ; (*ITAG) Solyc04g064440.1.1 (e_value=5e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:54700323-54701546 transcript_region:SL2.40ch04:54700323..54701546- functional_description:"F-box family protein (AHRD V1 ***- B9N8U5_POPTR); contains Interpro domain(s) IPR013187 F-box associated type 3 "; NbS00008963g0006.1 protein NbS00016274g0011.1 protein NbS00016274g0015.1 protein NbS00002966g0005.1 protein NbS00031481g0003.1 protein NbS00031481g0005.1 protein NbS00043258g0002.1 protein NbS00006805g0009.1 protein ; (*ITAG) Solyc06g065610.2.1 (e_value=2e-14) genomic_reference:SL2.40ch06 gene_region:37376494-37381443 transcript_region:SL2.40ch06:37376494..37381443+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00005353g0002.1 protein NbS00009458g0011.1 protein NbS00009458g0012.1 protein ; (*ITAG) Solyc02g069910.1.1 (e_value=2e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch02 gene_region:34275319-34275639 transcript_region:SL2.40ch02:34275319..34275639- functional_description:"Unknown Protein (AHRD V1)"; NbS00009458g0008.1 protein NbS00009458g0009.1 protein NbS00004338g0001.1 protein NbS00002097g0101.1 protein NbS00002097g0201.1 protein NbS00002097g0301.1 protein NbS00002319g0005.1 protein ; (*ITAG) Solyc09g020000.2.1 (e_value=1e-25) genomic_reference:SL2.40ch09 gene_region:18083123-18106956 transcript_region:SL2.40ch09:18083123..18106956- functional_description:"F21O3.28 protein (Fragment) (AHRD V1 *-*- Q9SRQ9_ARATH); contains Interpro domain(s) IPR014778 Myb, DNA-binding "; NbS00020693g0001.1 protein NbS00038353g0003.1 protein NbS00038353g0004.1 protein ; (*GB) gi|6456755|gb|AAF09256.1|AF202179_1 (e_value=4e-22) disease resistance protein BS2 [Capsicum chacoense];; (*ITAG) Solyc02g027080.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:15697192-15700519 transcript_region:SL2.40ch02:15697192..15700519+ go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00008576g0006.1 protein NbS00007661g0011.1 protein ; (*GB) gi|389986111|gb|AFL46173.1| (e_value=6e-21) jasmonate ZIM domain protein h [Nicotiana attenuata];; (*ITAG) Solyc03g122190.2.1 (e_value=7e-16) genomic_reference:SL2.40ch03 gene_region:64155650-64158036 transcript_region:SL2.40ch03:64155650..64158036- go_terms:GO:0005515 functional_description:"Jasmonate ZIM domain 2 (AHRD V1 **-- C7SCY2_CATRO); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00007661g0013.1 protein NbS00007661g0016.1 protein ; (*GB) gi|168040971|ref|XP_001772966.1| (e_value=3e-15) predicted protein [Physcomitrella patens subsp. patens]; NbS00007661g0010.1 protein NbS00013357g0003.1 protein NbS00040501g0001.1 protein NbS00030363g0003.1 protein NbS00030363g0004.1 protein NbS00036865g0002.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=2e-32) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00031817g0009.1 protein NbS00031817g0010.1 protein NbS00037196g0001.1 protein NbS00011395g0004.1 protein NbS00022644g0004.1 protein NbS00017323g0006.1 protein ; (*GB) gi|82659447|gb|ABB88840.1| (e_value=7e-47) aquaporin [Stevia rebaudiana];; (*SWP) sp|Q84RL7|PIP21_MAIZE (e_value=3e-45) Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2;; (*TAIR) AT4G35100.2 (e_value=1e-44) | Symbols: PIP3 | plasma membrane intrinsic protein 3 | chr4:16708672-16709958 FORWARD LENGTH=280;; (*ITAG) Solyc09g007760.2.1 (e_value=3e-49) genomic_reference:SL2.40ch09 gene_region:1295368-1298246 transcript_region:SL2.40ch09:1295368..1298246- go_terms:GO:0015250 functional_description:"Aquaporin 2 (AHRD V1 ***- O65357_SAMSA); contains Interpro domain(s) IPR012269 Aquaporin "; GO:0015250 NbS00017323g0007.1 protein ; (*GB) gi|359476353|ref|XP_003631823.1| (e_value=2e-14) PREDICTED: F-box/LRR-repeat protein 4-like [Vitis vinifera]; NbS00017323g0008.1 protein NbS00018299g0003.1 protein ; (*GB) gi|225428163|ref|XP_002281458.1| (e_value=3e-24) PREDICTED: glycerol-3-phosphate acyltransferase 3 [Vitis vinifera];; (*TAIR) AT5G60620.1 (e_value=3e-22) | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase 9 | chr5:24367266-24369647 FORWARD LENGTH=376;; (*ITAG) Solyc08g082340.2.1 (e_value=7e-29) genomic_reference:SL2.40ch08 gene_region:62324773-62331770 transcript_region:SL2.40ch08:62324773..62331770+ go_terms:GO:0004366,GO:0005515 functional_description:"Glycerol-3-phosphate acyltransferase 3 (AHRD V1 **** GPAT3_HUMAN); contains Interpro domain(s) IPR002123 Phospholipid/glycerol acyltransferase "; GO:0004366,GO:0005515 NbS00015655g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-43) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00015655g0010.1 protein NbS00034680g0002.1 protein ; (*GB) gi|359479705|ref|XP_003632339.1| (e_value=1e-118) PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SA60|PPR6_ARATH (e_value=7e-97) Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1;; (*TAIR) AT1G03100.1 (e_value=6e-98) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:744026-746407 REVERSE LENGTH=793;; (*ITAG) Solyc04g008410.1.1 (e_value=6e-139) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00049420g0004.1 protein NbS00005258g0104.1 protein NbS00005258g0106.1 protein NbS00005258g0202.1 protein NbS00030288g0003.1 protein NbS00030288g0004.1 protein NbS00054539g0003.1 protein NbS00041320g0008.1 protein NbS00025555g0006.1 protein NbS00001858g0007.1 protein ; (*GB) gi|195585841|ref|XP_002082687.1| (e_value=9e-17) GD25103 [Drosophila simulans]; NbS00006869g0103.1 protein NbS00006869g0302.1 protein NbS00019584g0007.1 protein NbS00035661g0002.1 protein NbS00017784g0001.1 protein ; (*GB) gi|224088661|ref|XP_002308510.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09910.1 (e_value=8e-24) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc04g014450.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:4673135-4679100 transcript_region:SL2.40ch04:4673135..4679100- go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00001995g0001.1 protein NbS00025787g0009.1 protein ; (*GB) gi|50656897|gb|AAM95458.1| (e_value=3e-16) calmodulin-like protein [Datura metel];; (*ITAG) Solyc11g071740.1.1 (e_value=1e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52221262-52221867 transcript_region:SL2.40ch11:52221262..52221867- go_terms:GO:0005509 functional_description:"Calmodulin-like protein (AHRD V1 ***- Q0VJ70_DATME); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00005851g0003.1 protein NbS00005851g0006.1 protein NbS00005851g0009.1 protein NbS00017467g0003.1 protein ; (*GB) gi|224127138|ref|XP_002319997.1| (e_value=9e-17) predicted protein [Populus trichocarpa];; (*TAIR) AT1G09910.1 (e_value=1e-17) | Symbols: | Rhamnogalacturonate lyase family protein | chr1:3220151-3224451 REVERSE LENGTH=675;; (*ITAG) Solyc11g011270.1.1 (e_value=8e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4320764-4323427 transcript_region:SL2.40ch11:4320764..4323427+ go_terms:GO:0005975 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **-- A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0005975 NbS00011385g0001.1 protein ; (*GB) gi|255552219|ref|XP_002517154.1| (e_value=5e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc01g080110.2.1 (e_value=1e-11) genomic_reference:SL2.40ch01 gene_region:71770948-71783098 transcript_region:SL2.40ch01:71770948..71783098- functional_description:"SNARE associated Golgi protein (AHRD V1 **-- C7LQY4_DESBD); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00007690g0003.1 protein NbS00009535g0006.1 protein NbS00002756g0012.1 protein NbS00002756g0013.1 protein NbS00002756g0009.1 protein NbS00002756g0010.1 protein NbS00052609g0007.1 protein NbS00007304g0009.1 protein NbS00029104g0005.1 protein NbS00034592g0003.1 protein ; (*GB) gi|255586384|ref|XP_002533839.1| (e_value=3e-42) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G67550.1 (e_value=8e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits to 154 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26946908-26949112 REVERSE LENGTH=509;; (*ITAG) Solyc06g073140.1.1 (e_value=9e-88) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41449237-41452400 transcript_region:SL2.40ch06:41449237..41452400- functional_description:"Unknown Protein (AHRD V1)"; NbS00034592g0004.1 protein NbS00000955g0006.1 protein NbS00027597g0005.1 protein NbS00002181g0211.1 protein NbS00008415g0002.1 protein ; (*GB) gi|359481570|ref|XP_003632641.1| (e_value=2e-18) PREDICTED: LOW QUALITY PROTEIN: 70 kDa peptidyl-prolyl isomerase-like [Vitis vinifera];; (*SWP) sp|Q9FJL3|FKB65_ARATH (e_value=8e-16) Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1;; (*TAIR) AT5G48570.1 (e_value=6e-17) | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | chr5:19690746-19693656 REVERSE LENGTH=578;; (*ITAG) Solyc10g078260.1.1 (e_value=3e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59418175-59421171 transcript_region:SL2.40ch10:59418175..59421171- go_terms:GO:0006457 functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 *--- Q86M29_BRUMA); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0006457 NbS00003998g0003.1 protein NbS00055393g0003.1 protein NbS00055393g0004.1 protein NbS00054646g0001.1 protein ; (*ITAG) Solyc11g008720.1.1 (e_value=2e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2894342-2901035 transcript_region:SL2.40ch11:2894342..2901035+ go_terms:GO:0005975 functional_description:"Beta-glucosidase G4 (AHRD V1 ***- A8TVR1_MEDTR); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0005975 NbS00015936g0005.1 protein NbS00015936g0006.1 protein ; (*GB) gi|225454224|ref|XP_002273843.1| (e_value=1e-55) PREDICTED: beta-amylase 7-like [Vitis vinifera];; (*SWP) sp|O80831|BAM7_ARATH (e_value=1e-39) Beta-amylase 7 OS=Arabidopsis thaliana GN=BAM7 PE=2 SV=2;; (*TAIR) AT2G45880.1 (e_value=9e-41) | Symbols: BMY4, BAM7 | beta-amylase 7 | chr2:18878674-18881824 REVERSE LENGTH=691;; (*ITAG) Solyc01g094580.2.1 (e_value=2e-107) genomic_reference:SL2.40ch01 gene_region:77758296-77767159 transcript_region:SL2.40ch01:77758296..77767159- go_terms:GO:0016161 functional_description:"Beta-amylase 9 (AHRD V1 **** D7M5N4_ARALY); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0016161 NbS00030998g0003.1 protein ; (*GB) gi|225423472|ref|XP_002274189.1| (e_value=2e-15) PREDICTED: UPF0420 protein C16orf58 homolog [Vitis vinifera];; (*TAIR) AT1G13770.2 (e_value=3e-17) | Symbols: RUS3 | Protein of unknown function, DUF647 | chr1:4722243-4724345 FORWARD LENGTH=353;; (*ITAG) Solyc05g012290.2.1 (e_value=2e-18) genomic_reference:SL2.40ch05 gene_region:5568469-5575841 transcript_region:SL2.40ch05:5568469..5575841+ go_terms:GO:0016021 functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C5JIY8_AJEDS); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "; GO:0016021 NbC23697068g0001.1 protein ; (*GB) gi|297848480|ref|XP_002892121.1| (e_value=2e-31) hypothetical protein ARALYDRAFT_887416 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SRW9|CSLD5_ARATH (e_value=7e-33) Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1;; (*TAIR) AT1G02730.1 (e_value=6e-34) | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like D5 | chr1:594697-598473 REVERSE LENGTH=1181;; (*ITAG) Solyc09g075550.2.1 (e_value=1e-38) genomic_reference:SL2.40ch09 gene_region:62738261-62743099 transcript_region:SL2.40ch09:62738261..62743099+ go_terms:GO:0016759 functional_description:"Cellulose synthase-like D6 (AHRD V1 **** Q09HT5_PHYPA); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00022290g0004.1 protein NbS00010250g0006.1 protein NbS00001916g0005.1 protein ; (*GB) gi|225433764|ref|XP_002271254.1| (e_value=4e-33) PREDICTED: uncharacterized protein LOC100251518 [Vitis vinifera];; (*ITAG) Solyc09g098490.2.1 (e_value=2e-48) genomic_reference:SL2.40ch09 gene_region:67561440-67568779 transcript_region:SL2.40ch09:67561440..67568779+ go_terms:GO:0005488 functional_description:"Epsin 2 (AHRD V1 *-*- Q5NCM7_MOUSE); contains Interpro domain(s) IPR001026 Epsin, N-terminal "; GO:0005488 NbS00012357g0015.1 protein NbS00012357g0007.1 protein NbS00012357g0008.1 protein NbS00012357g0009.1 protein ; (*GB) gi|297742188|emb|CBI33975.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g077500.2.1 (e_value=1e-20) genomic_reference:SL2.40ch08 gene_region:58623458-58663986 transcript_region:SL2.40ch08:58623458..58663986+ functional_description:"Vacuolar protein sorting-associated protein (AHRD V1 *-*- D3BBX0_POLPA); contains Interpro domain(s) IPR001849 Pleckstrin homology "; NbS00033593g0005.1 protein NbS00020017g0008.1 protein NbS00017673g0007.1 protein NbS00017673g0008.1 protein NbS00026772g0014.1 protein NbS00001718g0003.1 protein NbS00001718g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-15) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002718g0004.1 protein NbS00015428g0008.1 protein NbS00028266g0003.1 protein NbS00031847g0104.1 protein NbS00014566g0012.1 protein NbS00009268g0011.1 protein NbS00009268g0009.1 protein NbS00002434g0008.1 protein NbS00001134g0007.1 protein ; (*GB) gi|81301634|ref|YP_398929.1| (e_value=3e-21) NADH dehydrogenase subunit 7 [Nicotiana tomentosiformis];; (*SWP) sp|Q33BW6|NDHH_NICTO (e_value=1e-22) NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Nicotiana tomentosiformis GN=ndhH PE=3 SV=1;; (*ITAG) ATCG01110.1 (e_value=2e-20) | Symbols: NDHH | NAD(P)H dehydrogenase subunit H | chrC:122011-123192 REVERSE LENGTH=393; NbS00031794g0007.1 protein NbS00045590g0002.1 protein NbS00023004g0003.1 protein NbS00003266g0004.1 protein NbS00002663g0007.1 protein ; (*GB) gi|297811435|ref|XP_002873601.1| (e_value=9e-25) ATEXO70C1 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT5G13150.1 (e_value=4e-27) | Symbols: ATEXO70C1, EXO70C1 | exocyst subunit exo70 family protein C1 | chr5:4172969-4174930 REVERSE LENGTH=653;; (*ITAG) Solyc05g024340.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:31197013-31198791 transcript_region:SL2.40ch05:31197013..31198791+ go_terms:GO:0005515 functional_description:"Exocyst complex protein EXO70 (AHRD V1 *--- EXO70_KLULA); contains Interpro domain(s) IPR004140 Exo70 exocyst complex subunit "; GO:0005515 NbS00024160g0105.1 protein NbS00024192g0005.1 protein NbS00000768g0006.1 protein NbS00027903g0001.1 protein NbS00023367g0005.1 protein NbS00020704g0009.1 protein NbS00040316g0003.1 protein NbS00008252g0003.1 protein NbS00008252g0109.1 protein NbS00014189g0002.1 protein NbS00046407g0003.1 protein NbS00000995g0006.1 protein NbS00011642g0010.1 protein NbS00054263g0001.1 protein ; (*ITAG) Solyc04g008070.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1731222-1734904 transcript_region:SL2.40ch04:1731222..1734904+ go_terms:GO:0005634 functional_description:"Cyclin A (AHRD V1 *-*- P90681_ASTPE); contains Interpro domain(s) IPR013763 Cyclin-related "; GO:0005634 NbS00057849g0002.1 protein ; (*GB) gi|356526427|ref|XP_003531819.1| (e_value=4e-69) PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine max];; (*SWP) sp|P37518|ENGD_BACSU (e_value=2e-44) GTP-dependent nucleic acid-binding protein engD OS=Bacillus subtilis (strain 168) GN=engD PE=3 SV=1;; (*TAIR) AT1G56050.1 (e_value=8e-70) | Symbols: | GTP-binding protein-related | chr1:20963793-20966181 FORWARD LENGTH=421;; (*ITAG) Solyc07g066430.2.1 (e_value=3e-92) genomic_reference:SL2.40ch07 gene_region:65086442-65095484 transcript_region:SL2.40ch07:65086442..65095484+ go_terms:GO:0005515 functional_description:"GTP-binding protein (AHRD V1 **** B0JHK9_MICAN); contains Interpro domain(s) IPR004396 Conserved hypothetical protein CHP00092 "; GO:0005515 NbS00003277g0001.1 protein NbS00040883g0002.1 protein NbS00024660g0003.1 protein NbS00000204g0006.1 protein NbS00005491g0015.1 protein NbS00005491g0008.1 protein NbS00012616g0005.1 protein NbS00003428g0003.1 protein NbS00015403g0003.1 protein NbS00015403g0004.1 protein NbS00040042g0003.1 protein NbS00004748g0002.1 protein ; (*GB) gi|225445320|ref|XP_002281437.1| (e_value=3e-49) PREDICTED: nudix hydrolase 20, chloroplastic [Vitis vinifera];; (*SWP) sp|Q8VXZ0|NUD20_ARATH (e_value=3e-48) Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1;; (*TAIR) AT5G19460.1 (e_value=3e-49) | Symbols: atnudt20, NUDT20 | nudix hydrolase homolog 20 | chr5:6563112-6565178 FORWARD LENGTH=374;; (*ITAG) Solyc07g009170.2.1 (e_value=3e-54) genomic_reference:SL2.40ch07 gene_region:4229582-4233274 transcript_region:SL2.40ch07:4229582..4233274- go_terms:GO:0005515,GO:0004788 functional_description:"Nudix hydrolase 24 (AHRD V1 ***- B6TUU0_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0005515,GO:0004788 NbS00000588g0201.1 protein NbS00000588g0504.1 protein NbS00023969g0003.1 protein NbS00051905g0003.1 protein NbS00018712g0004.1 protein NbC23865055g0001.1 protein ; (*GB) gi|297738941|emb|CBI28186.3| (e_value=1e-18) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=1e-14) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=1e-15) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057159g0001.1 protein NbS00037939g0004.1 protein NbS00029197g0003.1 protein NbS00007121g0007.1 protein NbS00002488g0008.1 protein NbS00029687g0007.1 protein NbS00018915g0011.1 protein ; (*GB) gi|224083884|ref|XP_002307158.1| (e_value=6e-24) predicted protein [Populus trichocarpa];; (*TAIR) AT5G08320.1 (e_value=1e-24) | Symbols: | CONTAINS InterPro DOMAIN/s: E2F-associated phosphoprotein, C-terminal (InterPro:IPR019370); Has 149 Blast hits to 149 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr5:2677153-2678603 FORWARD LENGTH=150;; (*ITAG) Solyc01g008260.2.1 (e_value=4e-36) genomic_reference:SL2.40ch01 gene_region:2380615-2384353 transcript_region:SL2.40ch01:2380615..2384353+ functional_description:"E2F-associated phosphoprotein (AHRD V1 ***- Q0P5M4_BOVIN); contains Interpro domain(s) IPR019370 E2F-associated phosphoprotein, C-terminal "; NbS00018915g0005.1 protein NbS00018915g0007.1 protein NbS00019244g0002.1 protein NbS00019244g0003.1 protein NbS00004476g0004.1 protein ; (*GB) gi|296080893|emb|CBI18825.3| (e_value=8e-16) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q01607|RT12_OENEH (e_value=1e-16) 40S ribosomal protein S12, mitochondrial OS=Oenothera elata subsp. hookeri GN=RPS12 PE=2 SV=1;; (*ITAG) ATMG00980.1 (e_value=1e-14) | Symbols: RPSL2 | Ribosomal protein S12/S23 family protein | chrM:260224-260601 REVERSE LENGTH=125;; (*ITAG) Solyc11g056360.1.1 (e_value=7e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:43110058-43110498 transcript_region:SL2.40ch11:43110058..43110498- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S12 (AHRD V1 ***- C8PSU8_9SPIO); contains Interpro domain(s) IPR005679 Ribosomal protein S12, bacterial-type "; GO:0003735,GO:0005515 NbS00004476g0005.1 protein NbS00034177g0005.1 protein NbS00012382g0005.1 protein NbS00046151g0003.1 protein NbS00037910g0005.1 protein NbS00022957g0003.1 protein ; (*ITAG) Solyc02g092050.2.1 (e_value=5e-13) genomic_reference:SL2.40ch02 gene_region:47836352-47839882 transcript_region:SL2.40ch02:47836352..47839882- go_terms:GO:0003677 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677 NbS00003335g0001.1 protein NbS00041985g0004.1 protein NbS00011148g0014.1 protein NbS00011148g0009.1 protein NbS00011148g0010.1 protein ; (*GB) gi|147853302|emb|CAN78544.1| (e_value=2e-35) hypothetical protein VITISV_028082 [Vitis vinifera]; NbC23774738g0001.1 protein ; (*ITAG) Solyc04g076540.2.1 (e_value=4e-23) genomic_reference:SL2.40ch04 gene_region:59021459-59037413 transcript_region:SL2.40ch04:59021459..59037413- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00014700g0013.1 protein ; (*TAIR) AT4G04890.1 (e_value=7e-13) | Symbols: PDF2 | protodermal factor 2 | chr4:2476970-2480090 REVERSE LENGTH=743;; (*ITAG) Solyc03g026070.2.1 (e_value=3e-18) genomic_reference:SL2.40ch03 gene_region:7855770-7860225 transcript_region:SL2.40ch03:7855770..7860225- go_terms:GO:0043565 functional_description:"Homeobox-leucine zipper protein ATHB-8 (AHRD V1 *-*- ATHB8_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0043565 NbS00014700g0016.1 protein NbS00004270g0003.1 protein NbS00036960g0002.1 protein NbS00036960g0006.1 protein NbS00041266g0006.1 protein NbS00033032g0015.1 protein NbS00005937g0104.1 protein NbS00005937g0109.1 protein NbS00032990g0002.1 protein NbS00033317g0002.1 protein NbS00041155g0004.1 protein ; (*GB) gi|256599753|pdb|3HGO|A (e_value=9e-35) Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM Tomato;; (*SWP) sp|Q9FEW9|OPR3_SOLLC (e_value=9e-36) 12-oxophytodienoate reductase 3 OS=Solanum lycopersicum GN=OPR3 PE=1 SV=1;; (*TAIR) AT2G06050.3 (e_value=7e-33) | Symbols: OPR3 | oxophytodienoate-reductase 3 | chr2:2359240-2361971 REVERSE LENGTH=391;; (*ITAG) Solyc07g007870.2.1 (e_value=5e-37) genomic_reference:SL2.40ch07 gene_region:2549365-2554937 transcript_region:SL2.40ch07:2549365..2554937+ go_terms:GO:0016629 functional_description:"NADH flavin oxidoreductase/12-oxophytodienoate reductase (AHRD V1 **-* Q2U7C4_ASPOR); contains Interpro domain(s) IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal "; GO:0016629 NbS00002151g0003.1 protein NbS00005972g0007.1 protein NbS00005972g0008.1 protein NbS00016852g0004.1 protein ; (*GB) gi|147780465|emb|CAN62546.1| (e_value=2e-12) hypothetical protein VITISV_000758 [Vitis vinifera];; (*ITAG) Solyc07g041290.1.1 (e_value=2e-31) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:49523053-49523982 transcript_region:SL2.40ch07:49523053..49523982+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00061327g0001.1 protein ; (*GB) gi|296081281|emb|CBI17725.3| (e_value=3e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G54510.2 (e_value=7e-21) | Symbols: | Early-responsive to dehydration stress protein (ERD4) | chr3:20180339-20183220 FORWARD LENGTH=712;; (*ITAG) Solyc01g068500.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:70131982-70142492 transcript_region:SL2.40ch01:70131982..70142492+ go_terms:GO:0016020 functional_description:"Early-responsive to dehydration protein-like (AHRD V1 **-- Q5JKX1_ORYSJ); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00002182g0003.1 protein ; (*GB) gi|48057631|gb|AAT39954.1| (e_value=1e-13) Putative integrase, identical [Solanum demissum];; (*ITAG) Solyc08g022200.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:13682252-13682968 transcript_region:SL2.40ch08:13682252..13682968- functional_description:"Polyprotein (AHRD V1 ***- Q0ZLH4_9ORYZ); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00002182g0005.1 protein NbS00021012g0003.1 protein NbS00027386g0002.1 protein ; (*GB) gi|124360722|gb|ABD33259.2| (e_value=1e-16) non-LTR retroelement reverse transcriptase-like protein, related [Medicago truncatula]; NbS00019267g0005.1 protein NbS00019267g0006.1 protein NbS00005544g0001.1 protein NbS00006846g0002.1 protein NbS00006846g0004.1 protein NbS00006846g0005.1 protein NbS00006846g0006.1 protein NbS00015240g0002.1 protein NbS00024851g0002.1 protein NbS00024851g0003.1 protein NbS00024851g0107.1 protein NbS00003290g0003.1 protein NbS00012032g0008.1 protein NbS00049825g0004.1 protein NbS00008857g0009.1 protein ; (*ITAG) Solyc02g083600.2.1 (e_value=3e-16) genomic_reference:SL2.40ch02 gene_region:41525867-41532585 transcript_region:SL2.40ch02:41525867..41532585+ go_terms:GO:0005634,GO:0017111 functional_description:"Replication factor C large subunit (AHRD V1 *--- D4GSN1_HALVD); contains Interpro domain(s) IPR004582 Checkpoint protein Rad24 "; GO:0005634,GO:0017111 NbS00002703g0003.1 protein NbS00055413g0001.1 protein ; (*GB) gi|224140461|ref|XP_002323601.1| (e_value=5e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=3e-31) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.2 (e_value=2e-32) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285;; (*ITAG) Solyc10g008770.2.1 (e_value=2e-33) genomic_reference:SL2.40ch10 gene_region:2835103-2839953 transcript_region:SL2.40ch10:2835103..2839953- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00011462g0003.1 protein NbS00049322g0003.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-17) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=3e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00002722g0005.1 protein NbC25855799g0001.1 protein ; (*GB) gi|205829189|sp|B2X050.1|MNR1_CAPAN (e_value=3e-27) RecName: Full=(+)-neomenthol dehydrogenase; AltName: Full=Menthone:neomenthol reductase 1; Short=CaMNR1;; (*SWP) sp|B2X050|MNR1_CAPAN (e_value=9e-29) (+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1;; (*TAIR) AT3G61220.1 (e_value=1e-25) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr3:22663025-22664316 FORWARD LENGTH=296;; (*ITAG) Solyc01g094260.2.1 (e_value=7e-29) genomic_reference:SL2.40ch01 gene_region:77565592-77569466 transcript_region:SL2.40ch01:77565592..77569466+ go_terms:GO:0008152,GO:0055114 functional_description:"Short-chain dehydrogenase/reductase (AHRD V1 ***- B0KZQ5_CAPAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0008152,GO:0055114 NbS00030787g0005.1 protein ; (*GB) gi|224123484|ref|XP_002319089.1| (e_value=6e-16) predicted protein [Populus trichocarpa];; (*TAIR) AT2G37690.1 (e_value=5e-11) | Symbols: | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative | chr2:15806111-15810240 FORWARD LENGTH=642;; (*ITAG) Solyc11g006340.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00030787g0006.1 protein NbS00030787g0007.1 protein NbS00030787g0009.1 protein NbS00011975g0002.1 protein NbS00011975g0003.1 protein NbS00011975g0006.1 protein NbS00016183g0004.1 protein ; (*ITAG) Solyc01g044360.2.1 (e_value=8e-15) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00025574g0001.1 protein ; (*GB) gi|75150330|sp|Q8GSM7.1|HCT_TOBAC (e_value=1e-32) RecName: Full=Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase; AltName: Full=Hydroxycinnamoyl transferase;; (*SWP) sp|Q8GSM7|HCT_TOBAC (e_value=4e-34) Hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HCT PE=1 SV=1;; (*TAIR) AT5G48930.1 (e_value=1e-23) | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433;; (*ITAG) Solyc03g117600.2.1 (e_value=1e-32) genomic_reference:SL2.40ch03 gene_region:60768804-60774201 transcript_region:SL2.40ch03:60768804..60774201+ go_terms:GO:0047205,GO:0047172 functional_description:"Hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyltransferase (AHRD V1 **-* A4ZKI0_COFAR); contains Interpro domain(s) IPR003480 Transferase "; GO:0047205,GO:0047172 NbS00005561g0002.1 protein NbS00002759g0008.1 protein NbS00028632g0003.1 protein NbS00009248g0002.1 protein NbS00020807g0002.1 protein NbS00062081g0002.1 protein ; (*GB) gi|224109000|ref|XP_002315045.1| (e_value=9e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT1G69560.1 (e_value=1e-12) | Symbols: MYB105, LOF2, ATMYB105 | myb domain protein 105 | chr1:26157755-26158906 FORWARD LENGTH=330;; (*ITAG) Solyc05g007870.1.1 (e_value=5e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:2312616-2314591 transcript_region:SL2.40ch05:2312616..2314591+ go_terms:GO:0003677,GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *-*- Q9C5P9_ARATH); contains Interpro domain(s) IPR015495 Myb transcription factor "; GO:0003677,GO:0045449 NbS00040208g0006.1 protein NbS00040208g0009.1 protein ; (*GB) gi|356516478|ref|XP_003526921.1| (e_value=1e-20) PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like [Glycine max];; (*TAIR) AT5G50970.1 (e_value=9e-21) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20736377-20739132 FORWARD LENGTH=512;; (*ITAG) Solyc12g042200.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:42688645-42702623 transcript_region:SL2.40ch12:42688645..42702623+ functional_description:"U5 small nuclear ribonucleoprotein protein (AHRD V1 *--- C1BSR6_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbC25813243g0002.1 protein ; (*GB) gi|350538483|ref|NP_001234089.1| (e_value=2e-50) geranyl pyrophosphate synthase [Solanum lycopersicum];; (*SWP) sp|Q5HZ00|SPS3_ARATH (e_value=6e-31) Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1;; (*TAIR) AT2G34630.2 (e_value=5e-32) | Symbols: GPPS, GPS1 | geranyl diphosphate synthase 1 | chr2:14578689-14581632 FORWARD LENGTH=422;; (*ITAG) Solyc08g023470.2.1 (e_value=4e-53) genomic_reference:SL2.40ch08 gene_region:16804765-16817064 transcript_region:SL2.40ch08:16804765..16817064+ go_terms:GO:0046982 functional_description:"Solanesyl diphosphate synthase (AHRD V1 ***- Q2JP50_SYNJB); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0046982 NbS00026128g0008.1 protein NbS00010479g0003.1 protein NbS00010479g0005.1 protein NbS00045896g0004.1 protein NbS00013791g0002.1 protein NbS00020122g0003.1 protein NbS00020122g0005.1 protein NbS00016033g0006.1 protein NbS00036265g0004.1 protein NbS00010253g0004.1 protein NbS00006491g0003.1 protein NbS00006491g0006.1 protein NbS00029435g0002.1 protein NbS00029435g0003.1 protein NbS00029435g0005.1 protein NbS00037677g0010.1 protein NbS00021329g0006.1 protein NbS00021329g0008.1 protein NbS00032382g0004.1 protein NbS00025118g0002.1 protein NbS00025118g0005.1 protein NbS00053205g0002.1 protein NbS00007383g0007.1 protein ; (*ITAG) Solyc10g081010.1.1 (e_value=7e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61515798-61520273 transcript_region:SL2.40ch10:61515798..61520273- functional_description:"Hydroxyproline-rich glycoprotein-like (AHRD V1 ***- Q5JLQ2_ORYSJ)"; NbS00001390g0004.1 protein NbC25381325g0002.1 protein ; (*GB) gi|255569271|ref|XP_002525603.1| (e_value=8e-98) Cell division protein ftsH, putative [Ricinus communis];; (*SWP) sp|Q9SD67|FTSH7_ARATH (e_value=2e-92) ATP-dependent zinc metalloprotease FTSH 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1;; (*TAIR) AT3G47060.1 (e_value=1e-93) | Symbols: ftsh7 | FTSH protease 7 | chr3:17332999-17336613 FORWARD LENGTH=802;; (*ITAG) Solyc06g005950.2.1 (e_value=2e-102) genomic_reference:SL2.40ch06 gene_region:929120-938493 transcript_region:SL2.40ch06:929120..938493- go_terms:GO:0004176 functional_description:"Cell division protease FtsH homolog (AHRD V1 *-*- C6RIJ8_9PROT); contains Interpro domain(s) IPR005936 Peptidase M41, FtsH "; GO:0004176 NbS00008926g0006.1 protein NbS00008926g0008.1 protein ; (*GB) gi|225464119|ref|XP_002264023.1| (e_value=4e-36) PREDICTED: vacuolar protein sorting-associated protein 4 [Vitis vinifera];; (*SWP) sp|Q54PT2|VPS4_DICDI (e_value=2e-13) Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1;; (*TAIR) AT2G27600.1 (e_value=2e-36) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=7e-37) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00008926g0009.1 protein NbS00022303g0005.1 protein NbS00009257g0003.1 protein ; (*GB) gi|359486551|ref|XP_002275646.2| (e_value=2e-55) PREDICTED: regulator of nonsense transcripts 2-like [Vitis vinifera];; (*SWP) sp|Q9HAU5|RENT2_HUMAN (e_value=8e-19) Regulator of nonsense transcripts 2 OS=Homo sapiens GN=UPF2 PE=1 SV=1;; (*TAIR) AT2G39260.1 (e_value=2e-54) | Symbols: | binding;RNA binding | chr2:16392288-16399588 REVERSE LENGTH=1181;; (*ITAG) Solyc04g049760.2.1 (e_value=1e-67) genomic_reference:SL2.40ch04 gene_region:42488578-42509448 transcript_region:SL2.40ch04:42488578..42509448+ go_terms:GO:0042802 functional_description:"Nonsense-mediated mRNA decay 2 protein (AHRD V1 *--- Q2USJ1_ASPOR); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0042802 NbS00025677g0007.1 protein NbS00025677g0008.1 protein NbS00024906g0002.1 protein NbS00016649g0005.1 protein NbS00016649g0007.1 protein NbS00016649g0008.1 protein NbS00011911g0005.1 protein NbS00011160g0003.1 protein NbS00012196g0005.1 protein NbS00012196g0006.1 protein NbS00013765g0007.1 protein NbS00056092g0010.1 protein NbS00018129g0003.1 protein NbS00018129g0004.1 protein NbS00017658g0001.1 protein ; (*GB) gi|225439866|ref|XP_002274736.1| (e_value=3e-30) PREDICTED: 125 kDa kinesin-related protein [Vitis vinifera];; (*SWP) sp|O23826|K125_TOBAC (e_value=2e-25) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G37420.1 (e_value=1e-29) | Symbols: | ATP binding microtubule motor family protein | chr2:15700550-15705165 FORWARD LENGTH=1039;; (*ITAG) Solyc10g086340.1.1 (e_value=5e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64522523-64529356 transcript_region:SL2.40ch10:64522523..64529356+ go_terms:GO:0007018 functional_description:"Kinesin-5 (AHRD V1 ***- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00024715g0005.1 protein NbS00024715g0007.1 protein NbS00023748g0003.1 protein NbS00023748g0004.1 protein ; (*GB) gi|57013966|ref|YP_173438.1| (e_value=9e-20) hypothetical protein NitaMp100 [Nicotiana tabacum]; NbS00015172g0012.1 protein ; (*ITAG) Solyc03g062830.2.1 (e_value=7e-15) genomic_reference:SL2.40ch03 gene_region:29696132-29708002 transcript_region:SL2.40ch03:29696132..29708002- go_terms:GO:0047884 functional_description:"Nudix hydrolase 23 (AHRD V1 *-*- B6TED1_MAIZE); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0047884 NbS00015172g0016.1 protein NbS00015172g0008.1 protein NbS00015172g0104.1 protein NbS00015172g0105.1 protein NbS00000307g0009.1 protein NbS00034048g0001.1 protein NbC23748503g0001.1 protein ; (*GB) gi|255568028|ref|XP_002524991.1| (e_value=8e-27) r3h domain containing protein, putative [Ricinus communis];; (*ITAG) Solyc11g007110.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1568263-1573828 transcript_region:SL2.40ch11:1568263..1573828- go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW9_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00019006g0002.1 protein NbS00019006g0003.1 protein NbS00044905g0006.1 protein NbS00006637g0004.1 protein NbS00009571g0009.1 protein NbS00058101g0001.1 protein ; (*ITAG) Solyc07g052670.2.1 (e_value=2e-45) genomic_reference:SL2.40ch07 gene_region:58439470-58444048 transcript_region:SL2.40ch07:58439470..58444048- go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 **** D6MKL1_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00023489g0003.1 protein NbS00025876g0004.1 protein NbS00029128g0007.1 protein NbS00041503g0004.1 protein ; (*ITAG) Solyc06g074180.1.1 (e_value=2e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42260876-42262396 transcript_region:SL2.40ch06:42260876..42262396+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00041503g0005.1 protein NbS00041503g0007.1 protein NbS00041503g0010.1 protein ; (*GB) gi|224081184|ref|XP_002306325.1| (e_value=3e-38) cytochrome P450 [Populus trichocarpa];; (*SWP) sp|Q9SRQ1|C89A9_ARATH (e_value=7e-31) Cytochrome P450 89A9 OS=Arabidopsis thaliana GN=CYP89A9 PE=2 SV=1;; (*TAIR) AT3G03470.1 (e_value=5e-32) | Symbols: CYP89A9 | cytochrome P450, family 87, subfamily A, polypeptide 9 | chr3:824692-826345 REVERSE LENGTH=511;; (*ITAG) Solyc06g074180.1.1 (e_value=1e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:42260876-42262396 transcript_region:SL2.40ch06:42260876..42262396+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007654g0003.1 protein NbC24289433g0001.1 protein ; (*GB) gi|255544618|ref|XP_002513370.1| (e_value=6e-36) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G79220.1 (e_value=7e-26) | Symbols: | Mitochondrial transcription termination factor family protein | chr1:29799227-29800426 FORWARD LENGTH=399;; (*ITAG) Solyc02g067960.1.1 (e_value=1e-51) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32612872-32614011 transcript_region:SL2.40ch02:32612872..32614011- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 ***- D7KVZ3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00044635g0002.1 protein NbS00001941g0111.1 protein NbS00009721g0002.1 protein NbS00000894g0003.1 protein ; (*GB) gi|227053577|gb|ACP18876.1| (e_value=1e-16) subtilisin-like serine protease [Carica papaya];; (*TAIR) AT5G59810.1 (e_value=3e-13) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=2e-20) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00014750g0005.1 protein NbS00001521g0004.1 protein ; (*GB) gi|224126961|ref|XP_002319972.1| (e_value=4e-16) predicted protein [Populus trichocarpa]; NbS00001521g0007.1 protein NbS00009673g0006.1 protein NbS00011123g0006.1 protein NbS00009825g0001.1 protein ; (*GB) gi|350535388|ref|NP_001234192.1| (e_value=3e-21) auxin efflux facilitator SlPIN5 [Solanum lycopersicum];; (*SWP) sp|Q9FFD0|PIN8_ARATH (e_value=3e-18) Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=2 SV=2;; (*TAIR) AT5G16530.1 (e_value=2e-19) | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351;; (*ITAG) Solyc01g068410.2.1 (e_value=7e-24) genomic_reference:SL2.40ch01 gene_region:70058865-70061867 transcript_region:SL2.40ch01:70058865..70061867+ go_terms:GO:0009672 functional_description:"Auxin Efflux Carrier (AHRD V1 **** Q673E6_MEDTR); contains Interpro domain(s) IPR004776 Auxin efflux carrier "; GO:0009672 NbS00030717g0004.1 protein NbS00030717g0007.1 protein NbC24070081g0001.1 protein ; (*GB) gi|296089801|emb|CBI39620.3| (e_value=1e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FXA9|PPR83_ARATH (e_value=3e-35) Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1;; (*TAIR) AT1G56570.1 (e_value=2e-36) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21195804-21197721 FORWARD LENGTH=611;; (*ITAG) Solyc01g100800.1.1 (e_value=8e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:82496013-82497982 transcript_region:SL2.40ch01:82496013..82497982- go_terms:GO:0008116,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KB47_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116,GO:0034046 NbS00013745g0003.1 protein NbS00042682g0003.1 protein ; (*ITAG) Solyc01g020520.2.1 (e_value=3e-28) genomic_reference:SL2.40ch01 gene_region:31165431-31173049 transcript_region:SL2.40ch01:31165431..31173049+ go_terms:GO:0006508 functional_description:"Membrane-bound transcription factor protease site 2 (AHRD V1 ***- Q4V9P5_DANRE); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00004238g0015.1 protein NbS00022110g0006.1 protein NbS00022110g0007.1 protein ; (*ITAG) Solyc09g010790.1.1 (e_value=1e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:4082430-4085320 transcript_region:SL2.40ch09:4082430..4085320+ go_terms:GO:0005975,GO:0006810 functional_description:"( related) (AHRD V1 *-*- Q2HTJ8_MEDTR)"; GO:0005975,GO:0006810 NbS00022110g0008.1 protein NbS00017598g0001.1 protein NbS00027648g0006.1 protein ; (*GB) gi|238010444|gb|ACR36257.1| (e_value=2e-18) unknown [Zea mays]; NbS00006932g0012.1 protein ; (*GB) gi|224132234|ref|XP_002328218.1| (e_value=7e-71) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5ZJK8|TCPH_CHICK (e_value=8e-45) T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1;; (*TAIR) AT3G11830.1 (e_value=4e-69) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr3:3732734-3736156 FORWARD LENGTH=557;; (*ITAG) Solyc06g065520.2.1 (e_value=1e-75) genomic_reference:SL2.40ch06 gene_region:37287472-37295670 transcript_region:SL2.40ch06:37287472..37295670- go_terms:GO:0051082 functional_description:"T-complex protein eta subunit (AHRD V1 ***- A8HQ74_CHLRE); contains Interpro domain(s) IPR012720 T-complex protein 1, eta subunit "; GO:0051082 NbS00006932g0008.1 protein NbS00006932g0111.1 protein NbS00006932g0113.1 protein NbS00006932g0106.1 protein NbS00006932g0109.1 protein NbS00006932g0110.1 protein NbS00000533g0002.1 protein ; (*GB) gi|224129548|ref|XP_002320613.1| (e_value=9e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc06g008110.2.1 (e_value=2e-39) genomic_reference:SL2.40ch06 gene_region:1993664-1998920 transcript_region:SL2.40ch06:1993664..1998920- go_terms:GO:0005515,GO:0000166 functional_description:"WD repeat-containing protein (AHRD V1 **-- C9SVG1_VERA1); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0005515,GO:0000166 NbS00017349g0011.1 protein NbS00017349g0013.1 protein NbS00017349g0015.1 protein NbS00017349g0016.1 protein NbS00017349g0018.1 protein NbS00017349g0019.1 protein NbS00017349g0007.1 protein NbS00017349g0009.1 protein NbS00003582g0007.1 protein ; (*GB) gi|22329256|ref|NP_195639.2| (e_value=8e-24) phenylalanyl-tRNA synthetase alpha chain [Arabidopsis thaliana];; (*SWP) sp|Q9T034|SYFA_ARATH (e_value=2e-25) Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3;; (*TAIR) AT4G39280.1 (e_value=2e-26) | Symbols: | phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485;; (*ITAG) Solyc10g007060.2.1 (e_value=4e-26) genomic_reference:SL2.40ch10 gene_region:1440865-1447795 transcript_region:SL2.40ch10:1440865..1447795+ go_terms:GO:0005515,GO:0004826 functional_description:"Phenylalanyl-tRNA synthetase alpha chain (AHRD V1 **** B6SS66_MAIZE); contains Interpro domain(s) IPR002319 Phenylalanyl-tRNA synthetase, class IIc-related "; GO:0005515,GO:0004826 NbS00042291g0006.1 protein ; (*GB) gi|357113388|ref|XP_003558485.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100830148 [Brachypodium distachyon]; NbS00011141g0004.1 protein ; (*ITAG) Solyc04g079030.2.1 (e_value=2e-19) genomic_reference:SL2.40ch04 gene_region:61220807-61226659 transcript_region:SL2.40ch04:61220807..61226659+ go_terms:GO:0008152 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 *-*- B6TRK5_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00011141g0009.1 protein NbS00020445g0002.1 protein ; (*GB) gi|297742358|emb|CBI34507.3| (e_value=1e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g082590.2.1 (e_value=3e-17) genomic_reference:SL2.40ch08 gene_region:62486093-62488178 transcript_region:SL2.40ch08:62486093..62488178+ go_terms:GO:0045454 functional_description:"Glutaredoxin family protein (AHRD V1 **-- D7KS91_ARALY); contains Interpro domain(s) IPR012335 Thioredoxin fold "; GO:0045454 NbS00020445g0103.1 protein NbS00020445g0202.1 protein NbS00051823g0009.1 protein NbS00051823g0010.1 protein NbS00017796g0005.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-19) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00001873g0008.1 protein NbS00005746g0005.1 protein ; (*GB) gi|255555919|ref|XP_002518995.1| (e_value=7e-18) GTP-binding protein alpha subunit, gna, putative [Ricinus communis];; (*TAIR) AT1G31930.3 (e_value=2e-17) | Symbols: XLG3 | extra-large GTP-binding protein 3 | chr1:11465832-11468961 FORWARD LENGTH=848;; (*ITAG) Solyc08g005310.2.1 (e_value=3e-22) genomic_reference:SL2.40ch08 gene_region:235686-244594 transcript_region:SL2.40ch08:235686..244594+ go_terms:GO:0007186,GO:0007165 functional_description:"Guanine nucleotide-binding protein alpha-1 subunit (AHRD V1 *-*- B6TWS6_MAIZE); contains Interpro domain(s) IPR001019 Guanine nucleotide binding protein (G-protein), alpha subunit "; GO:0007186,GO:0007165 NbS00005746g0007.1 protein NbS00009763g0005.1 protein NbS00013168g0006.1 protein NbS00014747g0002.1 protein NbS00001370g0012.1 protein ; (*ITAG) Solyc10g076700.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:58965981-58967370 transcript_region:SL2.40ch10:58965981..58967370+ functional_description:"Rhodanese-like family protein-like protein (Fragment) (AHRD V1 *-*- A7KNZ8_GOSBA); contains Interpro domain(s) IPR001763 Rhodanese-like "; NbS00028755g0003.1 protein NbS00001056g0023.1 protein NbS00007048g0005.1 protein NbS00005470g0001.1 protein NbS00013695g0005.1 protein NbS00013695g0006.1 protein NbC25080844g0002.1 protein ; (*GB) gi|18146791|dbj|BAB82454.1| (e_value=2e-26) D-protein [Hordeum vulgare];; (*SWP) sp|Q93XW5|NSP5_ARATH (e_value=2e-21) Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1;; (*TAIR) AT3G07720.1 (e_value=5e-28) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:2465439-2467033 FORWARD LENGTH=329;; (*ITAG) Solyc05g024410.2.1 (e_value=2e-35) genomic_reference:SL2.40ch05 gene_region:31650811-31654017 transcript_region:SL2.40ch05:31650811..31654017+ functional_description:"Kelch-like protein 9 (AHRD V1 ***- KLHL9_HUMAN); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00006204g0006.1 protein NbS00006204g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-35) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00003677g0006.1 protein NbS00011769g0012.1 protein NbS00011769g0014.1 protein NbS00011769g0019.1 protein NbS00002557g0010.1 protein ; (*GB) gi|359477011|ref|XP_002262677.2| (e_value=4e-56) PREDICTED: cation/H(+) antiporter 15-like [Vitis vinifera];; (*SWP) sp|Q9SIT5|CHX15_ARATH (e_value=4e-36) Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1;; (*TAIR) AT2G13620.1 (e_value=3e-37) | Symbols: ATCHX15, CHX15 | cation/hydrogen exchanger 15 | chr2:5678006-5680621 FORWARD LENGTH=821;; (*ITAG) Solyc08g078880.2.1 (e_value=3e-78) genomic_reference:SL2.40ch08 gene_region:59731918-59735052 transcript_region:SL2.40ch08:59731918..59735052- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00011563g0010.1 protein ; (*GB) gi|153850916|gb|ABS52645.1| (e_value=6e-30) GEM-like 1 [Vitis vinifera];; (*SWP) sp|Q9SE96|GEML1_ARATH (e_value=4e-29) GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1;; (*TAIR) AT1G28200.1 (e_value=3e-30) | Symbols: FIP1 | FH interacting protein 1 | chr1:9850395-9852300 REVERSE LENGTH=259;; (*ITAG) Solyc07g021540.2.1 (e_value=3e-35) genomic_reference:SL2.40ch07 gene_region:19310213-19316385 transcript_region:SL2.40ch07:19310213..19316385- functional_description:"FIP1 (AHRD V1 **-- B6TPG9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00038388g0001.1 protein NbC25794902g0001.1 protein NbS00033966g0001.1 protein NbC24493575g0002.1 protein ; (*GB) gi|297740539|emb|CBI30721.3| (e_value=2e-84) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LMI0|TPS7_ARATH (e_value=1e-77) Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 OS=Arabidopsis thaliana GN=TPS7 PE=1 SV=1;; (*TAIR) AT1G06410.1 (e_value=8e-79) | Symbols: ATTPS7, TPS7, ATTPSA | trehalose-phosphatase/synthase 7 | chr1:1955413-1958153 FORWARD LENGTH=851;; (*ITAG) Solyc02g072150.2.1 (e_value=6e-89) genomic_reference:SL2.40ch02 gene_region:36009721-36013800 transcript_region:SL2.40ch02:36009721..36013800- go_terms:GO:0003825,GO:0004805 functional_description:"Alpha alpha-trehalose-phosphate synthase (UDP-forming) (AHRD V1 **** A3CXN9_METMJ); contains Interpro domain(s) IPR001830 Glycosyl transferase, family 20 "; GO:0003825,GO:0004805 NbS00028343g0015.1 protein NbS00028343g0008.1 protein NbS00028343g0010.1 protein ; (*GB) gi|225447241|ref|XP_002272784.1| (e_value=1e-28) PREDICTED: pentatricopeptide repeat-containing protein At1g73710-like [Vitis vinifera];; (*SWP) sp|Q9C9U0|PP118_ARATH (e_value=3e-25) Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1;; (*TAIR) AT1G73710.1 (e_value=2e-26) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:27721190-27724165 FORWARD LENGTH=991;; (*ITAG) Solyc07g054480.1.1 (e_value=8e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:60117772-60120816 transcript_region:SL2.40ch07:60117772..60120816- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KRL4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00000017g0005.1 protein NbS00000017g0008.1 protein NbS00000017g0009.1 protein NbS00017912g0008.1 protein NbS00027130g0004.1 protein NbS00007242g0007.1 protein NbS00023932g0009.1 protein NbS00025644g0003.1 protein NbS00008054g0004.1 protein NbS00008054g0103.1 protein NbS00008054g0105.1 protein NbS00036429g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-13) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00016041g0016.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=4e-36) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00016041g0023.1 protein NbS00056746g0007.1 protein NbS00022422g0007.1 protein NbS00036073g0007.1 protein NbS00006384g0005.1 protein NbS00008332g0004.1 protein NbS00045886g0003.1 protein NbS00012648g0015.1 protein NbS00012648g0018.1 protein NbS00043536g0004.1 protein NbS00006317g0008.1 protein NbS00000140g0002.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=9e-18) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00024054g0002.1 protein NbS00016277g0005.1 protein NbS00016277g0008.1 protein NbS00052860g0002.1 protein ; (*GB) gi|9759599|dbj|BAB11387.1| (e_value=9e-32) DNA-directed RNA polymerase subunit [Arabidopsis thaliana];; (*SWP) sp|Q10233|RPC2_SCHPO (e_value=6e-20) DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1;; (*TAIR) AT5G45140.1 (e_value=2e-34) | Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161;; (*ITAG) Solyc10g078860.1.1 (e_value=8e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59856207-59861644 transcript_region:SL2.40ch10:59856207..59861644- go_terms:GO:0006350 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9SHS2_RICCO); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0006350 NbS00026882g0003.1 protein ; (*GB) gi|297831832|ref|XP_002883798.1| (e_value=1e-14) hypothetical protein ARALYDRAFT_480309 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9SIU2|NCBP1_ARATH (e_value=5e-15) Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2;; (*TAIR) AT2G13540.1 (e_value=4e-16) | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848;; (*ITAG) Solyc10g005530.2.1 (e_value=4e-17) genomic_reference:SL2.40ch10 gene_region:432555-449709 transcript_region:SL2.40ch10:432555..449709- go_terms:GO:0005515,GO:0000339 functional_description:"Nuclear cap-binding protein subunit 1 (AHRD V1 *-** B0X1G0_CULQU); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005515,GO:0000339 NbS00001307g0004.1 protein ; (*GB) gi|225440145|ref|XP_002283240.1| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100251643 [Vitis vinifera];; (*TAIR) AT3G56680.1 (e_value=1e-17) | Symbols: | Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353;; (*ITAG) Solyc10g078300.1.1 (e_value=3e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59457974-59461423 transcript_region:SL2.40ch10:59457974..59461423+ go_terms:GO:0003676 functional_description:"Single-stranded nucleic acid binding R3H protein (Fragment) (AHRD V1 *-*- B3VWW5_POPTN); contains Interpro domain(s) IPR001374 Single-stranded nucleic acid binding R3H "; GO:0003676 NbS00023186g0004.1 protein NbS00040008g0003.1 protein NbC25250883g0001.1 protein ; (*GB) gi|147840051|emb|CAN66034.1| (e_value=6e-22) hypothetical protein VITISV_036228 [Vitis vinifera];; (*TAIR) AT5G05570.1 (e_value=4e-18) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1124;; (*ITAG) Solyc09g005600.2.1 (e_value=8e-34) genomic_reference:SL2.40ch09 gene_region:406341-420961 transcript_region:SL2.40ch09:406341..420961- go_terms:GO:0000166 functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 *--- L2GL2_PONAB); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00001547g0015.1 protein NbS00001547g0016.1 protein ; (*GB) gi|225436114|ref|XP_002278363.1| (e_value=6e-25) PREDICTED: lysosomal beta glucosidase-like isoform 1 [Vitis vinifera];; (*TAIR) AT5G20950.2 (e_value=3e-20) | Symbols: | Glycosyl hydrolase family protein | chr5:7107609-7110775 REVERSE LENGTH=624;; (*ITAG) Solyc01g009240.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:3269096-3273535 transcript_region:SL2.40ch01:3269096..3273535+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- O82074_TROMA); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00018081g0012.1 protein NbS00018081g0017.1 protein NbS00021177g0005.1 protein NbS00000427g0006.1 protein NbS00011139g0002.1 protein NbS00056344g0004.1 protein NbC23877853g0001.1 protein ; (*GB) gi|329739345|gb|AEB97385.1| (e_value=1e-32) MAX2B [Petunia x hybrida];; (*ITAG) Solyc12g010900.1.1 (e_value=9e-34) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3807527-3809695 transcript_region:SL2.40ch12:3807527..3809695+ functional_description:"MAX2-like protein (Fragment) (AHRD V1 *-*- B6VC85_PONTR); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; NbS00009696g0003.1 protein NbS00007412g0003.1 protein NbS00020335g0005.1 protein NbS00008393g0004.1 protein NbS00011379g0008.1 protein NbS00011379g0010.1 protein ; (*GB) gi|226533443|ref|NP_001150145.1| (e_value=7e-13) vacuolar sorting protein 4b [Zea mays];; (*TAIR) AT2G27600.1 (e_value=7e-13) | Symbols: SKD1, VPS4, ATSKD1 | AAA-type ATPase family protein | chr2:11781226-11783730 FORWARD LENGTH=435;; (*ITAG) Solyc11g067230.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:50054141-50059294 transcript_region:SL2.40ch11:50054141..50059294- go_terms:GO:0017048 functional_description:"Vacuolar sorting protein 4b (AHRD V1 **-- B6T3Y2_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0017048 NbS00016047g0001.1 protein ; (*GB) gi|359478124|ref|XP_002264803.2| (e_value=8e-30) PREDICTED: UPF0454 protein C12orf49 homolog [Vitis vinifera];; (*TAIR) AT3G59390.1 (e_value=7e-30) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2054 (InterPro:IPR019352); Has 184 Blast hits to 184 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr3:21946160-21948166 FORWARD LENGTH=273;; (*ITAG) Solyc06g054450.1.1 (e_value=5e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:33708201-33709022 transcript_region:SL2.40ch06:33708201..33709022+ functional_description:"UPF0454 protein C12orf49 homolog (AHRD V1 *--- C1BR83_9MAXI); contains Interpro domain(s) IPR019352 Protein of unknown function DUF2054 "; NbS00049267g0005.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis]; NbS00049267g0006.1 protein NbS00040399g0002.1 protein ; (*GB) gi|302142943|emb|CBI20238.3| (e_value=2e-35) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SFU0|SC24A_ARATH (e_value=1e-29) Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2;; (*TAIR) AT3G07100.1 (e_value=9e-31) | Symbols: ERMO2, SEC24A | Sec23/Sec24 protein transport family protein | chr3:2245689-2250077 REVERSE LENGTH=1038;; (*ITAG) Solyc02g082220.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:40489732-40500986 transcript_region:SL2.40ch02:40489732..40500986+ go_terms:GO:0005515 functional_description:"Protein transport protein SEC24 (AHRD V1 ***- C5FL43_NANOT); contains Interpro domain(s) IPR006896 Sec23/Sec24 trunk region "; GO:0005515 NbS00018862g0003.1 protein NbS00024684g0004.1 protein NbS00024684g0006.1 protein NbS00009157g0003.1 protein NbS00008356g0003.1 protein NbS00002080g0002.1 protein NbS00002080g0004.1 protein NbS00046802g0014.1 protein NbS00046802g0008.1 protein NbS00000705g0003.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=4e-13) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00000705g0005.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00000705g0006.1 protein NbS00005655g0003.1 protein NbS00005655g0006.1 protein ; (*TAIR) AT3G04920.1 (e_value=6e-16) | Symbols: | Ribosomal protein S24e family protein | chr3:1360989-1362065 FORWARD LENGTH=133;; (*ITAG) Solyc09g065330.2.1 (e_value=4e-17) genomic_reference:SL2.40ch09 gene_region:58994086-58996682 transcript_region:SL2.40ch09:58994086..58996682+ go_terms:GO:0031369 functional_description:"40S ribosomal protein S24 (AHRD V1 ***- C6TAW2_SOYBN); contains Interpro domain(s) IPR001976 Ribosomal protein S24e "; GO:0031369 NbS00005655g0112.1 protein NbS00005655g0113.1 protein NbS00012763g0113.1 protein NbS00025425g0006.1 protein NbS00027747g0004.1 protein NbS00012450g0003.1 protein NbC24088802g0001.1 protein ; (*GB) gi|283099385|gb|ADB08056.1| (e_value=4e-41) microtubule-associated protein [Nicotiana benthamiana];; (*TAIR) AT5G57210.1 (e_value=6e-12) | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr5:23181088-23183705 REVERSE LENGTH=737;; (*ITAG) Solyc07g008840.2.1 (e_value=7e-36) genomic_reference:SL2.40ch07 gene_region:3803764-3808890 transcript_region:SL2.40ch07:3803764..3808890- go_terms:GO:0005622 functional_description:"TBC1 domain family member 5 (AHRD V1 *--- B9A6K1_HUMAN); contains Interpro domain(s) IPR000195 RabGAP/TBC "; GO:0005622 NbS00015587g0002.1 protein ; (*GB) gi|297845960|ref|XP_002890861.1| (e_value=6e-16) hypothetical protein ARALYDRAFT_890567 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G30260.1 (e_value=6e-18) | Symbols: | BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651159-10651452 FORWARD LENGTH=97;; (*ITAG) Solyc11g020860.1.1 (e_value=1e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:12811178-12811423 transcript_region:SL2.40ch11:12811178..12811423+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015587g0005.1 protein ; (*TAIR) AT1G30260.1 (e_value=1e-17) | Symbols: | BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651159-10651452 FORWARD LENGTH=97;; (*ITAG) Solyc11g020860.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:12811178-12811423 transcript_region:SL2.40ch11:12811178..12811423+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015539g0009.1 protein NbS00006197g0011.1 protein NbS00000966g0002.1 protein NbS00000966g0004.1 protein NbS00019153g0006.1 protein NbS00014752g0104.1 protein NbS00014752g0301.1 protein NbS00058577g0001.1 protein ; (*ITAG) Solyc01g017760.1.1 (e_value=6e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:25359170-25361127 transcript_region:SL2.40ch01:25359170..25361127+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031872g0003.1 protein NbS00034966g0006.1 protein ; (*TAIR) AT1G66740.1 (e_value=3e-14) | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone chaperone | chr1:24892586-24893548 FORWARD LENGTH=196;; (*ITAG) Solyc02g091110.2.1 (e_value=1e-18) genomic_reference:SL2.40ch02 gene_region:47097884-47100605 transcript_region:SL2.40ch02:47097884..47100605- go_terms:GO:0042393 functional_description:"Histone chaperone ASF1-like protein (AHRD V1 **** D0NV04_PHYIN); contains Interpro domain(s) IPR006818 Histone chaperone, ASF1-like "; GO:0042393 NbS00000640g0001.1 protein NbS00048894g0001.1 protein NbS00016328g0003.1 protein NbS00014082g0205.1 protein NbS00014082g0301.1 protein NbS00014082g0303.1 protein NbS00039686g0006.1 protein NbS00052958g0001.1 protein NbS00010195g0005.1 protein ; (*GB) gi|297849756|ref|XP_002892759.1| (e_value=3e-40) F-box family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=5e-39) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=4e-40) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=1e-109) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00010195g0008.1 protein ; (*GB) gi|297738233|emb|CBI27434.3| (e_value=2e-21) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FZ70|FDL1_ARATH (e_value=3e-16) F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1;; (*TAIR) AT1G13570.1 (e_value=2e-17) | Symbols: | F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416;; (*ITAG) Solyc05g008470.1.1 (e_value=6e-58) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:2815549-2824484 transcript_region:SL2.40ch05:2815549..2824484+ functional_description:"F-box family protein (AHRD V1 *-*- D7KQH0_ARALY); contains Interpro domain(s) IPR006566 FBD-like "; NbS00020600g0004.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=4e-25) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbS00020600g0005.1 protein NbS00036349g0005.1 protein NbS00003744g0002.1 protein NbS00005584g0006.1 protein NbS00005584g0008.1 protein NbS00022704g0012.1 protein ; (*GB) gi|224128908|ref|XP_002328996.1| (e_value=1e-42) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9VNE2|EXBA_DROME (e_value=3e-12) Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1;; (*TAIR) AT5G36230.1 (e_value=1e-39) | Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411;; (*ITAG) Solyc05g055770.2.1 (e_value=2e-42) genomic_reference:SL2.40ch05 gene_region:64423607-64429627 transcript_region:SL2.40ch05:64423607..64429627+ go_terms:GO:0031369 functional_description:"Basic leucine zipper and W2 domain-containing protein 2 (AHRD V1 **-- A8N5N1_COPC7); contains Interpro domain(s) IPR003307 eIF4-gamma/eIF5/eIF2-epsilon "; GO:0031369 NbS00022704g0009.1 protein NbS00033758g0010.1 protein NbC23770994g0002.1 protein ; (*GB) gi|138996988|dbj|BAF52856.1| (e_value=1e-33) repressor of silencing 2a [Nicotiana tabacum];; (*SWP) sp|Q9SJQ6|ROS1_ARATH (e_value=7e-30) Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2;; (*TAIR) AT2G36490.1 (e_value=5e-31) | Symbols: DML1, ROS1 | demeter-like 1 | chr2:15308259-15314272 REVERSE LENGTH=1393;; (*ITAG) Solyc10g083630.1.1 (e_value=2e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62731863-62741419 transcript_region:SL2.40ch10:62731863..62741419- go_terms:GO:0006284,GO:0051539,GO:0006281 functional_description:"Repressor of silencing 2b (AHRD V1 **-- A4PF90_TOBAC); contains Interpro domain(s) IPR003265 HhH-GPD domain "; GO:0006284,GO:0051539,GO:0006281 NbS00014812g0002.1 protein NbS00005942g0005.1 protein NbS00019184g0002.1 protein NbS00032062g0003.1 protein NbC23705708g0001.1 protein ; (*GB) gi|308044365|ref|NP_001183757.1| (e_value=6e-29) uncharacterized protein LOC100502350 precursor [Zea mays];; (*SWP) sp|Q69VD9|P2C57_ORYSJ (e_value=2e-27) Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1;; (*TAIR) AT2G25620.1 (e_value=1e-26) | Symbols: AtDBP1, DBP1 | DNA-binding protein phosphatase 1 | chr2:10903154-10904978 REVERSE LENGTH=392;; (*ITAG) Solyc06g065610.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:37376494-37381443 transcript_region:SL2.40ch06:37376494..37381443+ go_terms:GO:0004722 functional_description:"Serine/threonine phosphatase family protein (AHRD V1 **** C1E0J1_9CHLO); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00022996g0004.1 protein NbS00026470g0008.1 protein NbS00026470g0009.1 protein ; (*GB) gi|359488225|ref|XP_002263589.2| (e_value=4e-15) PREDICTED: nudix hydrolase 18, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9LE73|NUDT4_ARATH (e_value=2e-15) Nudix hydrolase 4 OS=Arabidopsis thaliana GN=NUDT4 PE=1 SV=1;; (*TAIR) AT1G18300.1 (e_value=1e-16) | Symbols: atnudt4, NUDT4 | nudix hydrolase homolog 4 | chr1:6299841-6300799 FORWARD LENGTH=207;; (*ITAG) Solyc03g118470.2.1 (e_value=2e-35) genomic_reference:SL2.40ch03 gene_region:61383765-61385574 transcript_region:SL2.40ch03:61383765..61385574+ go_terms:GO:0008486 functional_description:"Diphosphoinositol polyphosphate phosphohydrolase 1 (AHRD V1 *-** C1BIE3_ONCMY); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0008486 NbS00006220g0009.1 protein NbS00038161g0001.1 protein ; (*ITAG) Solyc11g069060.1.1 (e_value=2e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:50736550-50737782 transcript_region:SL2.40ch11:50736550..50737782+ go_terms:GO:0030001 functional_description:"Heavy-metal-associated domain-containing protein (AHRD V1 ***- D7LIF5_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00017754g0004.1 protein NbS00048530g0001.1 protein NbS00029070g0005.1 protein NbS00029070g0006.1 protein NbS00011740g0006.1 protein NbS00032071g0001.1 protein NbS00040074g0006.1 protein ; (*GB) gi|302144242|emb|CBI23490.3| (e_value=4e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0DXZ1|CSLE2_ORYSJ (e_value=3e-23) Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1;; (*TAIR) AT1G55850.1 (e_value=2e-23) | Symbols: ATCSLE1, CSLE1 | cellulose synthase like E1 | chr1:20876752-20879414 FORWARD LENGTH=729;; (*ITAG) Solyc07g065660.2.1 (e_value=6e-24) genomic_reference:SL2.40ch07 gene_region:64569421-64573269 transcript_region:SL2.40ch07:64569421..64573269- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT17_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00001554g0004.1 protein ; (*GB) gi|363808166|ref|NP_001242226.1| (e_value=2e-33) uncharacterized protein LOC100799063 [Glycine max];; (*TAIR) AT5G47420.1 (e_value=4e-33) | Symbols: | Tryptophan RNA-binding attenuator protein-like | chr5:19233013-19234838 FORWARD LENGTH=282;; (*ITAG) Solyc08g007320.2.1 (e_value=3e-41) genomic_reference:SL2.40ch08 gene_region:1869322-1877948 transcript_region:SL2.40ch08:1869322..1877948+ functional_description:"Protein containing DUF124 (AHRD V1 ***- A0M024_GRAFK); contains Interpro domain(s) IPR002838 Protein of unknown function DUF124 "; NbS00027956g0005.1 protein ; (*GB) gi|255542556|ref|XP_002512341.1| (e_value=5e-56) branched-chain amino acid aminotransferase, putative [Ricinus communis];; (*SWP) sp|Q9ASR4|BCAL2_ARATH (e_value=2e-52) Branched-chain-amino-acid aminotransferase-like protein 2 OS=Arabidopsis thaliana GN=At5g27410 PE=2 SV=1;; (*TAIR) AT5G27410.2 (e_value=2e-52) | Symbols: | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | chr5:9676362-9682468 FORWARD LENGTH=936;; (*ITAG) Solyc01g098700.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:80878024-80889329 transcript_region:SL2.40ch01:80878024..80889329+ go_terms:GO:0008152 functional_description:"Branched-chain amino acid aminotransferase-like protein (AHRD V1 ***- Q84L60_CICAR); contains Interpro domain(s) IPR001544 Aminotransferase, class IV "; GO:0008152 NbS00019023g0005.1 protein NbS00008390g0004.1 protein NbS00038719g0009.1 protein NbS00030530g0005.1 protein NbS00030530g0006.1 protein NbS00011757g0107.1 protein NbS00011757g0109.1 protein NbS00021787g0007.1 protein NbS00013094g0003.1 protein ; (*ITAG) Solyc01g097100.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:79809349-79810641 transcript_region:SL2.40ch01:79809349..79810641- functional_description:"Unknown Protein (AHRD V1)"; NbS00047880g0004.1 protein NbS00022619g0009.1 protein NbS00003442g0004.1 protein NbS00003248g0006.1 protein NbS00022820g0004.1 protein NbS00000899g0001.1 protein NbC24330142g0001.1 protein ; (*GB) gi|343887313|dbj|BAK61859.1| (e_value=1e-20) mechanosensitive ion channel domain-containing protein [Citrus unshiu];; (*SWP) sp|Q9LYG9|MSL10_ARATH (e_value=2e-13) Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1;; (*TAIR) AT5G12080.3 (e_value=1e-14) | Symbols: MSL10, ATMSL10 | mechanosensitive channel of small conductance-like 10 | chr5:3898182-3900923 REVERSE LENGTH=734;; (*ITAG) Solyc08g061980.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:47406404-47411399 transcript_region:SL2.40ch08:47406404..47411399- go_terms:GO:0016020 functional_description:"Mechanosensitive ion channel family (AHRD V1 *-*- B6QJY9_PENMQ); contains Interpro domain(s) IPR010920 Like-Sm ribonucleoprotein-related, core "; GO:0016020 NbS00018647g0003.1 protein ; (*TAIR) AT2G37690.1 (e_value=9e-15) | Symbols: | phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative | chr2:15806111-15810240 FORWARD LENGTH=642;; (*ITAG) Solyc11g006340.1.1 (e_value=8e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1061760-1067189 transcript_region:SL2.40ch11:1061760..1067189+ go_terms:GO:0004638 functional_description:"Phosphoribosylaminoimidazole carboxylase ATPase subunit (AHRD V1 *-** B9LJ70_CHLSY); contains Interpro domain(s) IPR016301 Phosphoribosylaminoimidazole carboxylase "; GO:0004638 NbS00031388g0008.1 protein NbS00021762g0001.1 protein NbS00028114g0005.1 protein NbS00028114g0008.1 protein NbS00006035g0004.1 protein NbS00027598g0003.1 protein NbS00002456g0008.1 protein NbS00002456g0009.1 protein NbS00013070g0007.1 protein ; (*GB) gi|255572355|ref|XP_002527116.1| (e_value=6e-20) mRNA splicing factor, putative [Ricinus communis];; (*TAIR) AT1G71800.1 (e_value=7e-19) | Symbols: CSTF64 | cleavage stimulating factor 64 | chr1:26999606-27001850 FORWARD LENGTH=461;; (*ITAG) Solyc02g069160.2.1 (e_value=1e-21) genomic_reference:SL2.40ch02 gene_region:33681620-33689059 transcript_region:SL2.40ch02:33681620..33689059+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA-binding protein (AHRD V1 *--- Q16HY2_AEDAE); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00013070g0103.1 protein NbS00041958g0002.1 protein NbS00016826g0002.1 protein NbS00005007g0103.1 protein NbS00005007g0105.1 protein NbS00006209g0001.1 protein NbS00003016g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-18) hypothetical protein [Nicotiana tabacum]; NbS00026010g0007.1 protein NbS00026010g0010.1 protein ; (*GB) gi|4588012|gb|AAD25952.1|AF085717_1 (e_value=6e-17) putative callose synthase catalytic subunit [Gossypium hirsutum];; (*SWP) sp|Q9SFU6|CALS9_ARATH (e_value=8e-16) Callose synthase 9 OS=Arabidopsis thaliana GN=CALS9 PE=2 SV=2;; (*TAIR) AT3G07160.1 (e_value=6e-17) | Symbols: ATGSL10, gsl10, CALS9 | glucan synthase-like 10 | chr3:2265142-2279383 REVERSE LENGTH=1890;; (*ITAG) Solyc01g006360.2.1 (e_value=9e-20) genomic_reference:SL2.40ch01 gene_region:955781-982687 transcript_region:SL2.40ch01:955781..982687- functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00016386g0008.1 protein ; (*GB) gi|225461963|ref|XP_002266700.1| (e_value=6e-54) PREDICTED: protein kinase G11A-like [Vitis vinifera];; (*SWP) sp|P15792|KPK1_PHAVU (e_value=1e-50) Protein kinase PVPK-1 OS=Phaseolus vulgaris PE=2 SV=1;; (*TAIR) AT4G26610.1 (e_value=2e-55) | Symbols: D6PKL1, AGC1-2 | D6 protein kinase like 1 | chr4:13425568-13427188 FORWARD LENGTH=506;; (*ITAG) Solyc07g065710.2.1 (e_value=4e-58) genomic_reference:SL2.40ch07 gene_region:64606823-64611481 transcript_region:SL2.40ch07:64606823..64611481- go_terms:GO:0004711 functional_description:"Ribosomal protein S6 kinase alpha-3 (AHRD V1 *-** KS6A3_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004711 NbS00016386g0010.1 protein NbS00018143g0004.1 protein ; (*GB) gi|41176619|gb|AAR99599.1| (e_value=1e-48) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q8RXD9|DPE2_ARATH (e_value=2e-31) 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1;; (*TAIR) AT2G40840.1 (e_value=2e-32) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=3e-53) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00004438g0002.1 protein NbS00045963g0003.1 protein NbS00031334g0007.1 protein ; (*TAIR) AT1G26945.1 (e_value=2e-15) | Symbols: KDR | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:9351571-9352474 FORWARD LENGTH=94;; (*ITAG) Solyc06g070910.2.1 (e_value=1e-14) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00049093g0003.1 protein NbS00049093g0004.1 protein NbS00032199g0003.1 protein ; (*GB) gi|351726321|ref|NP_001235075.1| (e_value=2e-15) uncharacterized protein LOC100526856 [Glycine max];; (*SWP) sp|O49627|ISU1_ARATH (e_value=2e-14) Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1;; (*TAIR) AT4G22220.1 (e_value=2e-15) | Symbols: ISU1, ATISU1 | SufE/NifU family protein | chr4:11759444-11760881 REVERSE LENGTH=167;; (*ITAG) Solyc03g112900.2.1 (e_value=4e-19) genomic_reference:SL2.40ch03 gene_region:57238077-57241465 transcript_region:SL2.40ch03:57238077..57241465+ go_terms:GO:0008198 functional_description:"Iron-sulfur cluster assembly scaffold protein IscU (AHRD V1 **** D0I7Q6_VIBHO); contains Interpro domain(s) IPR002871 NIF system FeS cluster assembly, NifU, N-terminal "; GO:0008198 NbS00015668g0006.1 protein NbS00015321g0003.1 protein NbS00015321g0004.1 protein NbS00000318g0003.1 protein NbS00000318g0004.1 protein NbS00000318g0211.1 protein NbS00000318g0208.1 protein NbS00018359g0002.1 protein NbS00018359g0003.1 protein NbS00002525g0014.1 protein NbS00002525g0017.1 protein NbS00002525g0007.1 protein NbS00002525g0010.1 protein NbS00016802g0005.1 protein ; (*GB) gi|116006458|gb|ABJ51763.1| (e_value=3e-21) nodulation signaling pathway 1-like protein [Nicotiana benthamiana];; (*SWP) sp|Q4VYC8|NSP1_MEDTR (e_value=8e-19) Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1;; (*TAIR) AT3G13840.1 (e_value=5e-15) | Symbols: | GRAS family transcription factor | chr3:4555305-4556837 REVERSE LENGTH=510;; (*ITAG) Solyc03g123400.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:64317825-64319453 transcript_region:SL2.40ch03:64317825..64319453- go_terms:GO:0003700 functional_description:"GRAS family transcription factor (AHRD V1 **-* Q4VYC4_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor "; GO:0003700 NbS00003774g0007.1 protein NbS00003774g0009.1 protein NbS00001394g0003.1 protein NbS00008134g0205.1 protein NbS00008134g0207.1 protein NbS00008134g0208.1 protein NbS00008134g0209.1 protein NbS00015967g0205.1 protein NbS00015967g0209.1 protein NbC23641713g0001.1 protein ; (*GB) gi|225459601|ref|XP_002285869.1| (e_value=7e-35) PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=7e-28) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=7e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00037266g0001.1 protein ; (*ITAG) Solyc08g008160.2.1 (e_value=5e-15) genomic_reference:SL2.40ch08 gene_region:2626584-2636165 transcript_region:SL2.40ch08:2626584..2636165- go_terms:GO:0000166 functional_description:"WD repeat-containing protein 74 (AHRD V1 *--- C1BRU4_9MAXI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00022344g0004.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=1e-28) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00019994g0109.1 protein NbS00016385g0010.1 protein NbS00013761g0005.1 protein NbS00009603g0006.1 protein NbS00023441g0003.1 protein NbS00037592g0005.1 protein NbS00050481g0002.1 protein NbS00015634g0004.1 protein NbS00015634g0007.1 protein NbS00023834g0003.1 protein ; (*GB) gi|356523318|ref|XP_003530287.1| (e_value=9e-36) PREDICTED: uncharacterized protein LOC100779801 [Glycine max];; (*TAIR) AT5G05570.2 (e_value=1e-25) | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:1656766-1663728 FORWARD LENGTH=1099;; (*ITAG) Solyc09g005600.2.1 (e_value=3e-54) genomic_reference:SL2.40ch09 gene_region:406341-420961 transcript_region:SL2.40ch09:406341..420961- go_terms:GO:0000166 functional_description:"Lethal(2) giant larvae protein homolog 2 (AHRD V1 *--- L2GL2_PONAB); contains Interpro domain(s) IPR011046 WD40 repeat-like "; GO:0000166 NbS00030673g0002.1 protein ; (*GB) gi|224109820|ref|XP_002315323.1| (e_value=3e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SV36|ARK1_ARATH (e_value=1e-23) Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2;; (*TAIR) AT1G12430.1 (e_value=1e-21) | Symbols: PAK, ARK3 | armadillo repeat kinesin 3 | chr1:4234122-4238552 REVERSE LENGTH=919;; (*ITAG) Solyc11g008350.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2551602-2567405 transcript_region:SL2.40ch11:2551602..2567405- go_terms:GO:0008017,GO:0003779 functional_description:"Kinesin-like protein (AHRD V1 *-*- D0NDH4_PHYIN); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008017,GO:0003779 NbS00033566g0002.1 protein NbS00033566g0003.1 protein NbS00030487g0013.1 protein NbS00030487g0015.1 protein NbS00028950g0003.1 protein NbS00058942g0001.1 protein NbS00037636g0003.1 protein NbS00020582g0012.1 protein NbS00020582g0007.1 protein ; (*GB) gi|297737168|emb|CBI26369.3| (e_value=4e-35) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G06750.1 (e_value=1e-31) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:2073882-2076350 FORWARD LENGTH=519;; (*ITAG) Solyc06g053810.2.1 (e_value=6e-60) genomic_reference:SL2.40ch06 gene_region:33165093-33169631 transcript_region:SL2.40ch06:33165093..33169631+ functional_description:"At1g04280-like protein (Fragment) (AHRD V1 *-*- B0FVI9_ARALY)"; NbS00017963g0003.1 protein NbS00007737g0007.1 protein NbS00046473g0007.1 protein NbS00023881g0003.1 protein NbS00015060g0003.1 protein ; (*ITAG) Solyc10g018410.1.1 (e_value=2e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:7708341-7711149 transcript_region:SL2.40ch10:7708341..7711149+ go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q9FH43_ARATH); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00015060g0004.1 protein NbS00015060g0106.1 protein NbS00011621g0004.1 protein NbS00011621g0005.1 protein NbS00022950g0007.1 protein NbS00014648g0102.1 protein NbS00000649g0003.1 protein ; (*GB) gi|57013924|ref|YP_173397.1| (e_value=8e-21) hypothetical protein NitaMp051 [Nicotiana tabacum]; NbS00003340g0003.1 protein NbS00012544g0002.1 protein NbS00052111g0002.1 protein ; (*GB) gi|255550560|ref|XP_002516330.1| (e_value=1e-12) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G31305.1 (e_value=6e-15) | Symbols: INH3 | inhibitor-3 | chr2:13350909-13351232 FORWARD LENGTH=107; NbS00039650g0007.1 protein NbS00057436g0007.1 protein NbS00057436g0008.1 protein NbS00017169g0003.1 protein NbS00017169g0006.1 protein NbS00020621g0003.1 protein ; (*GB) gi|359472534|ref|XP_002274321.2| (e_value=2e-21) PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9FZD1|PPR58_ARATH (e_value=8e-19) Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=1 SV=1;; (*TAIR) AT1G26460.1 (e_value=6e-20) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:9151816-9154407 FORWARD LENGTH=630;; (*ITAG) Solyc05g012390.2.1 (e_value=1e-30) genomic_reference:SL2.40ch05 gene_region:5649249-5653665 transcript_region:SL2.40ch05:5649249..5653665+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KQQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00004808g0002.1 protein ; (*GB) gi|4959712|gb|AAD34459.1|AF136010_1 (e_value=2e-28) SPP30 [Solanum chacoense];; (*TAIR) AT5G58030.1 (e_value=3e-29) | Symbols: | Transport protein particle (TRAPP) component | chr5:23487021-23488483 REVERSE LENGTH=195;; (*ITAG) Solyc04g015050.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:5249508-5255638 transcript_region:SL2.40ch04:5249508..5255638+ functional_description:"Trafficking protein particle complex subunit 5 (AHRD V1 ***- C1BHU1_ONCMY); contains Interpro domain(s) IPR016696 TRAPP I complex, Trs31 "; NbS00009427g0004.1 protein NbS00009427g0007.1 protein NbS00023631g0003.1 protein NbS00008094g0002.1 protein NbS00056694g0004.1 protein NbS00056694g0006.1 protein NbS00010434g0003.1 protein ; (*ITAG) Solyc06g007680.1.1 (e_value=9e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:1681082-1682284 transcript_region:SL2.40ch06:1681082..1682284+ go_terms:GO:0005515,GO:0004842 functional_description:"F-box/LRR-repeat protein 14 (AHRD V1 ***- B5X325_SALSA); contains Interpro domain(s) IPR006553 Leucine-rich repeat, cysteine-containing subtype "; GO:0005515,GO:0004842 NbS00035041g0002.1 protein NbS00059688g0001.1 protein NbS00006722g0001.1 protein ; (*TAIR) AT1G52360.1 (e_value=4e-14) | Symbols: | Coatomer, beta' subunit | chr1:19499282-19505397 FORWARD LENGTH=926;; (*ITAG) Solyc12g043000.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44043014-44056386 transcript_region:SL2.40ch12:44043014..44056386- go_terms:GO:0030117 functional_description:"Coatomer beta&apos subunit (AHRD V1 ***- Q0CXS2_ASPTN); contains Interpro domain(s) IPR016453 Coatomer, beta' subunit "; GO:0030117 NbS00030350g0002.1 protein NbS00006886g0003.1 protein NbS00006886g0004.1 protein NbS00006428g0004.1 protein NbS00014489g0001.1 protein NbC24533369g0001.1 protein ; (*GB) gi|296081171|emb|CBI18197.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=2e-21) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G76850.1 (e_value=1e-22) | Symbols: SEC5A | exocyst complex component sec5 | chr1:28848013-28854282 FORWARD LENGTH=1090;; (*ITAG) Solyc04g071350.2.1 (e_value=6e-34) genomic_reference:SL2.40ch04 gene_region:55866523-55892059 transcript_region:SL2.40ch04:55866523..55892059+ functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q6PGY8_DANRE)"; NbS00012273g0002.1 protein NbS00012273g0004.1 protein NbS00007092g0001.1 protein ; (*GB) gi|147777089|emb|CAN67841.1| (e_value=7e-34) hypothetical protein VITISV_016664 [Vitis vinifera];; (*TAIR) AT2G47980.1 (e_value=1e-31) | Symbols: SCC3, ATSCC3 | sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098;; (*ITAG) Solyc05g026510.2.1 (e_value=3e-34) genomic_reference:SL2.40ch05 gene_region:41681314-41700135 transcript_region:SL2.40ch05:41681314..41700135- go_terms:GO:0005488 functional_description:"Cohesin subunit (AHRD V1 *--- A8NZN7_COPC7); contains Interpro domain(s) IPR013721 STAG "; GO:0005488 NbS00040498g0001.1 protein NbS00030293g0006.1 protein NbS00020567g0005.1 protein NbS00009266g0004.1 protein NbS00009266g0007.1 protein NbS00001288g0003.1 protein NbS00012835g0005.1 protein NbS00030409g0004.1 protein NbS00030409g0005.1 protein NbS00018310g0003.1 protein NbC24424200g0001.1 protein ; (*GB) gi|297739406|emb|CBI29535.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G28260.2 (e_value=5e-19) | Symbols: | Telomerase activating protein Est1 | chr1:9875776-9878782 REVERSE LENGTH=880;; (*ITAG) Solyc02g078020.2.1 (e_value=8e-81) genomic_reference:SL2.40ch02 gene_region:37405063-37409811 transcript_region:SL2.40ch02:37405063..37409811- functional_description:"Binding protein (Fragment) (AHRD V1 **-- D7KCU4_ARALY); contains Interpro domain(s) IPR019458 Telomerase activating protein Est1 "; NbS00021220g0006.1 protein NbS00016861g0004.1 protein NbS00052190g0003.1 protein NbS00018397g0001.1 protein NbS00004252g0003.1 protein ; (*GB) gi|357511757|ref|XP_003626167.1| (e_value=3e-17) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|O80522|GDL2_ARATH (e_value=1e-15) GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1;; (*TAIR) AT1G09390.1 (e_value=1e-16) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:3031264-3033415 FORWARD LENGTH=370;; (*ITAG) Solyc01g005610.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:427617-430354 transcript_region:SL2.40ch01:427617..430354+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g09390 (AHRD V1 ***- GDL2_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00019321g0012.1 protein NbS00035944g0005.1 protein NbS00018703g0006.1 protein NbS00018703g0008.1 protein ; (*GB) gi|255553821|ref|XP_002517951.1| (e_value=2e-18) protein with unknown function [Ricinus communis];; (*TAIR) AT2G14830.1 (e_value=2e-15) | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6365818 FORWARD LENGTH=454;; (*ITAG) Solyc12g010700.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3630935-3632819 transcript_region:SL2.40ch12:3630935..3632819- functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00038237g0001.1 protein NbS00038237g0105.1 protein NbC24020691g0001.1 protein ; (*GB) gi|167857805|gb|ACA03877.1| (e_value=6e-52) chloroplast zebra-necrosis protein [Nicotiana benthamiana];; (*TAIR) AT2G16800.1 (e_value=6e-47) | Symbols: | high-affinity nickel-transport family protein | chr2:7285824-7287188 FORWARD LENGTH=372;; (*ITAG) Solyc01g111620.2.1 (e_value=4e-51) genomic_reference:SL2.40ch01 gene_region:89600618-89604371 transcript_region:SL2.40ch01:89600618..89604371- go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00001988g0011.1 protein NbS00029409g0001.1 protein ; (*GB) gi|377806982|ref|YP_005090432.1| (e_value=2e-42) cox1 gene product (mitochondrion) [Boea hygrometrica];; (*SWP) sp|P14578|COX1_ORYSJ (e_value=1e-39) Cytochrome c oxidase subunit 1 OS=Oryza sativa subsp. japonica GN=COX1 PE=3 SV=2;; (*ITAG) ATMG01360.1 (e_value=3e-38) | Symbols: COX1 | cytochrome oxidase | chrM:349830-351413 REVERSE LENGTH=527;; (*ITAG) Solyc07g019510.2.1 (e_value=6e-44) genomic_reference:SL2.40ch07 gene_region:11854353-11856013 transcript_region:SL2.40ch07:11854353..11856013- go_terms:GO:0004129 functional_description:"Cytochrome c oxidase subunit 1 (AHRD V1 **** Q70G75_9SOLN); contains Interpro domain(s) IPR000883 Cytochrome c oxidase, subunit I "; GO:0004129 NbS00010198g0002.1 protein NbS00018131g0012.1 protein ; (*ITAG) Solyc11g022510.1.1 (e_value=7e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:14342092-14346857 transcript_region:SL2.40ch11:14342092..14346857+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00018131g0008.1 protein NbS00011272g0005.1 protein NbS00033545g0008.1 protein NbS00035139g0003.1 protein NbS00018122g0006.1 protein NbS00018122g0007.1 protein NbS00039934g0002.1 protein NbS00039934g0004.1 protein NbS00038685g0001.1 protein ; (*ITAG) Solyc04g051450.2.1 (e_value=2e-23) genomic_reference:SL2.40ch04 gene_region:49711894-49716979 transcript_region:SL2.40ch04:49711894..49716979+ go_terms:GO:0005515,GO:0003700 functional_description:"Tsl-kinase interacting protein 1 (AHRD V1 *-*- D7LJ99_ARALY)"; GO:0005515,GO:0003700 NbS00028918g0008.1 protein NbS00001260g0006.1 protein NbS00026286g0012.1 protein NbS00026286g0008.1 protein ; (*GB) gi|225445778|ref|XP_002274987.1| (e_value=1e-43) PREDICTED: CDK-activating kinase assembly factor MAT1 [Vitis vinifera];; (*TAIR) AT4G30820.3 (e_value=3e-27) | Symbols: | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related | chr4:15007144-15008378 FORWARD LENGTH=178;; (*ITAG) Solyc04g071310.2.1 (e_value=2e-71) genomic_reference:SL2.40ch04 gene_region:55829770-55839724 transcript_region:SL2.40ch04:55829770..55839724+ go_terms:GO:0005515 functional_description:"CDK-activating kinase assembly factor MAT1 family protein expressed (AHRD V1 ***- Q2R4I6_ORYSJ); contains Interpro domain(s) IPR004575 Cdk-activating kinase assembly factor (MAT1) "; GO:0005515 NbS00025131g0007.1 protein NbS00016420g0003.1 protein NbS00038681g0004.1 protein NbS00031875g0005.1 protein NbS00043567g0004.1 protein NbS00000988g0016.1 protein NbS00017903g0008.1 protein NbS00001408g0007.1 protein NbS00010748g0003.1 protein NbS00001908g0011.1 protein NbS00001267g0112.1 protein NbS00011984g0011.1 protein NbS00011984g0013.1 protein ; (*ITAG) Solyc08g006450.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:1052164-1053155 transcript_region:SL2.40ch08:1052164..1053155- functional_description:"Unknown Protein (AHRD V1)"; NbS00011984g0015.1 protein NbS00011984g0006.1 protein NbS00011984g0007.1 protein NbS00002396g0104.1 protein NbS00006773g0002.1 protein NbS00014749g0001.1 protein ; (*GB) gi|225451733|ref|XP_002277093.1| (e_value=6e-21) PREDICTED: putative G3BP-like protein-like [Vitis vinifera];; (*ITAG) Solyc02g088920.2.1 (e_value=3e-31) genomic_reference:SL2.40ch02 gene_region:45419814-45424121 transcript_region:SL2.40ch02:45419814..45424121- go_terms:GO:0003676,GO:0000166,GO:0005622 functional_description:"Ras GTPase-activating protein-binding protein 2 (AHRD V1 *--- B5X4A8_SALSA); contains Interpro domain(s) IPR018222 Nuclear transport factor 2, Eukaryote "; GO:0003676,GO:0000166,GO:0005622 NbS00015340g0004.1 protein NbS00015340g0005.1 protein NbS00015340g0006.1 protein ; (*ITAG) Solyc04g072490.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:57089582-57095928 transcript_region:SL2.40ch04:57089582..57095928- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *-*- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00015340g0007.1 protein ; (*ITAG) Solyc04g072490.2.1 (e_value=7e-27) genomic_reference:SL2.40ch04 gene_region:57089582-57095928 transcript_region:SL2.40ch04:57089582..57095928- functional_description:"Mitochondrial transcription termination factor family protein (AHRD V1 *-*- D7M0N3_ARALY); contains Interpro domain(s) IPR003690 Mitochodrial transcription termination factor-related "; NbS00003621g0006.1 protein NbS00003621g0007.1 protein NbS00010415g0101.1 protein NbS00010607g0007.1 protein NbS00010607g0008.1 protein NbS00002400g0002.1 protein NbS00002400g0003.1 protein NbS00007085g0011.1 protein NbS00007085g0009.1 protein NbS00035540g0004.1 protein NbS00019367g0009.1 protein NbS00052538g0005.1 protein NbS00005137g0102.1 protein NbS00003141g0004.1 protein NbS00009579g0005.1 protein NbS00008914g0006.1 protein NbS00006152g0006.1 protein NbC24126888g0001.1 protein ; (*GB) gi|255552410|ref|XP_002517249.1| (e_value=3e-45) cysteine desulfurylase, putative [Ricinus communis];; (*ITAG) Solyc11g005840.1.1 (e_value=3e-60) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:672662-674975 transcript_region:SL2.40ch11:672662..674975- go_terms:GO:0008152,GO:0030170 functional_description:"Cysteine desulfurase (AHRD V1 **-- A4A4I5_9GAMM); contains Interpro domain(s) IPR000192 Aminotransferase, class V/Cysteine desulfurase "; GO:0008152,GO:0030170 NbS00009970g0103.1 protein NbS00014107g0008.1 protein ; (*GB) gi|329739341|gb|AEB97383.1| (e_value=4e-21) MAX1 [Petunia x hybrida];; (*TAIR) AT2G26170.1 (e_value=1e-15) | Symbols: CYP711A1, MAX1 | cytochrome P450, family 711, subfamily A, polypeptide 1 | chr2:11140851-11143270 FORWARD LENGTH=522;; (*ITAG) Solyc08g062950.2.1 (e_value=5e-22) genomic_reference:SL2.40ch08 gene_region:49585014-49587278 transcript_region:SL2.40ch08:49585014..49587278- go_terms:GO:0009055 functional_description:"Cytochrome P450"; GO:0009055 NbS00014107g0009.1 protein NbS00028027g0007.1 protein NbS00028027g0009.1 protein ; (*GB) gi|225439856|ref|XP_002278124.1| (e_value=2e-23) PREDICTED: serine/threonine-protein kinase AFC1 [Vitis vinifera];; (*SWP) sp|P51566|AFC1_ARATH (e_value=5e-19) Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2;; (*TAIR) AT3G53570.4 (e_value=4e-20) | Symbols: AFC1, AME2, FC1 | FUS3-complementing gene 1 | chr3:19861449-19864125 REVERSE LENGTH=467;; (*ITAG) Solyc03g112050.2.1 (e_value=7e-20) genomic_reference:SL2.40ch03 gene_region:56639937-56643720 transcript_region:SL2.40ch03:56639937..56643720+ go_terms:GO:0004674,GO:0004715 functional_description:"Serine/threonine kinase (AHRD V1 **** C4Q3G8_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674,GO:0004715 NbS00023062g0013.1 protein NbS00023070g0001.1 protein NbS00048726g0003.1 protein NbS00039570g0001.1 protein NbS00029155g0004.1 protein NbS00029060g0013.1 protein NbS00010853g0005.1 protein NbS00024553g0011.1 protein ; (*ITAG) Solyc04g058060.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54322327-54325742 transcript_region:SL2.40ch04:54322327..54325742+ go_terms:GO:0005515 functional_description:"30S ribosomal protein S8P (AHRD V1 *-*- RS8_KORCO); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00024553g0006.1 protein ; (*ITAG) Solyc04g051160.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48997251-49001559 transcript_region:SL2.40ch04:48997251..49001559- go_terms:GO:0016020,GO:0016021 functional_description:"Sugar transporter family protein expressed (AHRD V1 **-- Q2R1T1_ORYSJ); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0016020,GO:0016021 NbS00005037g0004.1 protein NbC25515128g0001.1 protein ; (*GB) gi|5734587|emb|CAB52797.1| (e_value=9e-18) external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum];; (*ITAG) Solyc10g008630.2.1 (e_value=1e-19) genomic_reference:SL2.40ch10 gene_region:2704288-2710170 transcript_region:SL2.40ch10:2704288..2710170+ go_terms:GO:0008137 functional_description:"NADH dehydrogenase like protein (AHRD V1 **** O65414_ARATH); contains Interpro domain(s) IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase "; GO:0008137 NbS00059876g0001.1 protein NbS00014595g0009.1 protein NbS00003205g0002.1 protein NbS00055687g0008.1 protein NbS00023826g0006.1 protein NbS00039678g0003.1 protein NbS00005742g0004.1 protein NbS00005742g0005.1 protein NbS00002372g0005.1 protein ; (*GB) gi|224111566|ref|XP_002315903.1| (e_value=3e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g007540.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:1232799-1236007 transcript_region:SL2.40ch04:1232799..1236007- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 ***- MDTK_ENT38); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0015559 NbS00002372g0006.1 protein NbS00008208g0001.1 protein NbS00023550g0003.1 protein NbS00017404g0003.1 protein ; (*GB) gi|359494410|ref|XP_002266179.2| (e_value=2e-25) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Vitis vinifera];; (*SWP) sp|Q9FPS9|UBP15_ARATH (e_value=2e-11) Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2;; (*TAIR) AT1G17110.1 (e_value=1e-12) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=924;; (*ITAG) Solyc07g061780.2.1 (e_value=9e-70) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00006568g0003.1 protein ; (*GB) gi|255579202|ref|XP_002530447.1| (e_value=2e-83) acetylornithine aminotransferase, putative [Ricinus communis];; (*SWP) sp|Q9M8M7|ARGD_ARATH (e_value=1e-78) Acetylornithine aminotransferase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=WIN1 PE=1 SV=1;; (*TAIR) AT1G80600.1 (e_value=8e-80) | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298675-30300513 REVERSE LENGTH=457;; (*ITAG) Solyc08g080370.2.1 (e_value=2e-90) genomic_reference:SL2.40ch08 gene_region:60840952-60844640 transcript_region:SL2.40ch08:60840952..60844640+ go_terms:GO:0003992 functional_description:"Acetylornithine aminotransferase (AHRD V1 **** D8THT2_VOLCA); contains Interpro domain(s) IPR004636 Acetylornithine and succinylornithine aminotransferase "; GO:0003992 NbS00006568g0004.1 protein NbS00006568g0005.1 protein ; (*GB) gi|255579202|ref|XP_002530447.1| (e_value=1e-30) acetylornithine aminotransferase, putative [Ricinus communis];; (*SWP) sp|Q9M8M7|ARGD_ARATH (e_value=5e-29) Acetylornithine aminotransferase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=WIN1 PE=1 SV=1;; (*TAIR) AT1G80600.1 (e_value=4e-30) | Symbols: WIN1 | HOPW1-1-interacting 1 | chr1:30298675-30300513 REVERSE LENGTH=457;; (*ITAG) Solyc08g080370.2.1 (e_value=3e-38) genomic_reference:SL2.40ch08 gene_region:60840952-60844640 transcript_region:SL2.40ch08:60840952..60844640+ go_terms:GO:0003992 functional_description:"Acetylornithine aminotransferase (AHRD V1 **** D8THT2_VOLCA); contains Interpro domain(s) IPR004636 Acetylornithine and succinylornithine aminotransferase "; GO:0003992 NbS00023850g0111.1 protein NbS00023850g0112.1 protein NbS00023850g0114.1 protein NbS00004053g0007.1 protein NbS00024705g0004.1 protein NbS00013455g0002.1 protein NbS00013305g0005.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=8e-20) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00013305g0008.1 protein NbS00016325g0003.1 protein NbS00018802g0002.1 protein NbS00001732g0002.1 protein NbS00006042g0003.1 protein NbS00013580g0005.1 protein NbS00013580g0006.1 protein NbS00005607g0004.1 protein NbS00005607g0009.1 protein NbS00024573g0007.1 protein NbS00032945g0002.1 protein ; (*ITAG) Solyc02g085930.2.1 (e_value=2e-18) genomic_reference:SL2.40ch02 gene_region:43277704-43281274 transcript_region:SL2.40ch02:43277704..43281274+ go_terms:GO:0004601,GO:0005515 functional_description:"Peroxidase (AHRD V1 **** Q0ZA68_9ROSI); contains Interpro domain(s) IPR002016 Haem peroxidase, plant/fungal/bacterial "; GO:0004601,GO:0005515 NbS00061680g0002.1 protein ; (*GB) gi|225438714|ref|XP_002282485.1| (e_value=3e-43) PREDICTED: uncharacterized protein LOC100267903 [Vitis vinifera];; (*TAIR) AT4G36980.2 (e_value=7e-37) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); Has 5391 Blast hits to 4388 proteins in 280 species: Archae - 1; Bacteria - 114; Metazoa - 3014; Fungi - 666; Plants - 308; Viruses - 14; Other Eukaryotes - 1274 (source: NCBI BLink). | chr4:17434283-17437012 REVERSE LENGTH=507;; (*ITAG) Solyc02g090850.2.1 (e_value=1e-57) genomic_reference:SL2.40ch02 gene_region:46898348-46906437 transcript_region:SL2.40ch02:46898348..46906437+ functional_description:"Splicing factor arginine/serine-rich 16 (AHRD V1 *-*- C0HB74_SALSA); contains Interpro domain(s) IPR019147 Splicing factor, suppressor of white apricot "; NbS00037466g0007.1 protein ; (*GB) gi|148923087|gb|ABR18801.1| (e_value=2e-36) kinase-associated protein phosphatase 1 [Solanum peruvianum];; (*SWP) sp|P46014|P2C70_ARATH (e_value=1e-31) Protein phosphatase 2C 70 OS=Arabidopsis thaliana GN=KAPP PE=1 SV=2;; (*TAIR) AT5G19280.1 (e_value=1e-32) | Symbols: KAPP, RAG1 | kinase associated protein phosphatase | chr5:6488450-6493182 FORWARD LENGTH=581;; (*ITAG) Solyc01g079720.2.1 (e_value=6e-40) genomic_reference:SL2.40ch01 gene_region:71336146-71351250 transcript_region:SL2.40ch01:71336146..71351250- go_terms:GO:0004721,GO:0019901 functional_description:"Kinase-associated protein phosphatase 1 (AHRD V1 **** A6N8J3_SOLPE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004721,GO:0019901 NbS00028939g0001.1 protein NbS00006054g0008.1 protein NbS00010927g0001.1 protein NbS00024023g0001.1 protein NbS00002140g0007.1 protein NbS00046031g0005.1 protein NbS00049140g0002.1 protein NbS00051151g0002.1 protein NbS00027042g0002.1 protein NbS00033886g0002.1 protein NbS00027909g0001.1 protein NbS00026550g0005.1 protein NbS00026550g0006.1 protein NbS00038363g0002.1 protein NbS00007578g0007.1 protein NbS00015728g0009.1 protein NbS00001939g0005.1 protein ; (*GB) gi|147864333|emb|CAN83002.1| (e_value=1e-12) hypothetical protein VITISV_003696 [Vitis vinifera]; NbS00026962g0001.1 protein NbS00026962g0002.1 protein NbS00020432g0006.1 protein NbC24324645g0001.1 protein ; (*ITAG) Solyc07g052630.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:58420121-58424359 transcript_region:SL2.40ch07:58420121..58424359+ go_terms:GO:0016757 functional_description:"Glycosyltransferase-like protein (AHRD V1 **-- D8QTD2_SELML); contains Interpro domain(s) IPR006740 Protein of unknown function DUF604 "; GO:0016757 NbS00001248g0003.1 protein NbS00042092g0005.1 protein ; (*GB) gi|255570203|ref|XP_002526062.1| (e_value=2e-16) calcium-dependent protein kinase, putative [Ricinus communis];; (*SWP) sp|Q3E9C0|CDPKY_ARATH (e_value=2e-14) Calcium-dependent protein kinase 34 OS=Arabidopsis thaliana GN=CPK34 PE=2 SV=1;; (*TAIR) AT5G19360.1 (e_value=1e-15) | Symbols: CPK34 | calcium-dependent protein kinase 34 | chr5:6521716-6523780 REVERSE LENGTH=523;; (*ITAG) Solyc01g008740.1.1 (e_value=2e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2776811-2782126 transcript_region:SL2.40ch01:2776811..2782126+ go_terms:GO:0004683 functional_description:"Calcium-dependent protein kinase 17 (AHRD V1 **** Q6KC53_NICPL); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00049750g0002.1 protein NbS00049750g0003.1 protein NbS00009387g0003.1 protein NbS00021644g0005.1 protein NbS00021644g0006.1 protein ; (*GB) gi|1717755|sp|P50165.1|TRNH_DATST (e_value=1e-22) RecName: Full=Tropinone reductase homolog; AltName: Full=P29X;; (*SWP) sp|P50165|TRNH_DATST (e_value=4e-24) Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1;; (*TAIR) AT2G29320.1 (e_value=3e-19) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr2:12592180-12593377 FORWARD LENGTH=269;; (*ITAG) Solyc04g054950.2.1 (e_value=1e-22) genomic_reference:SL2.40ch04 gene_region:52630751-52632145 transcript_region:SL2.40ch04:52630751..52632145- go_terms:GO:0043621 functional_description:"Tropinone reductase I (AHRD V1 **-- Q8VXN5_CALSE); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0043621 NbS00021644g0008.1 protein ; (*ITAG) Solyc11g039370.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23175402-23177046 transcript_region:SL2.40ch11:23175402..23177046+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019263g0101.1 protein NbS00011412g0001.1 protein NbS00012390g0001.1 protein ; (*GB) gi|383168154|gb|AFG67141.1| (e_value=2e-16) Pinus taeda anonymous locus 0_8541_01 genomic sequence;; (*TAIR) AT5G64020.1 (e_value=8e-17) | Symbols: TBL14 | TRICHOME BIREFRINGENCE-LIKE 14 | chr5:25620534-25622034 REVERSE LENGTH=408;; (*ITAG) Solyc07g042020.2.1 (e_value=1e-20) genomic_reference:SL2.40ch07 gene_region:52206610-52210531 transcript_region:SL2.40ch07:52206610..52210531+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00061024g0001.1 protein ; (*GB) gi|297741117|emb|CBI31848.3| (e_value=3e-17) unnamed protein product [Vitis vinifera];; (*SWP) sp|P93736|SYV_ARATH (e_value=2e-16) Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=1 SV=2;; (*TAIR) AT1G14610.1 (e_value=2e-17) | Symbols: TWN2, VALRS | valyl-tRNA synthetase / valine--tRNA ligase (VALRS) | chr1:5008502-5014486 REVERSE LENGTH=1108;; (*ITAG) Solyc09g007540.2.1 (e_value=2e-24) genomic_reference:SL2.40ch09 gene_region:1126820-1139864 transcript_region:SL2.40ch09:1126820..1139864+ go_terms:GO:0042802,GO:0004832 functional_description:"Valyl-tRNA synthetase (AHRD V1 **** Q7G2B1_ORYSJ); contains Interpro domain(s) IPR002303 Valyl-tRNA synthetase, class Ia "; GO:0042802,GO:0004832 NbS00014175g0001.1 protein NbS00007559g0005.1 protein NbS00006331g0001.1 protein NbS00006331g0002.1 protein ; (*GB) gi|33637487|gb|AAQ23899.1| (e_value=8e-26) RSH2 [Nicotiana tabacum];; (*TAIR) AT1G54130.1 (e_value=5e-25) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=3e-27) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00006331g0003.1 protein NbS00017390g0002.1 protein NbS00000167g0102.1 protein NbS00013272g0002.1 protein NbS00013272g0004.1 protein ; (*GB) gi|258549503|gb|ACV74414.1| (e_value=1e-26) putative cinnamyl alcohol dehydrogenase [Camellia sinensis];; (*SWP) sp|Q7XWU3|CADH6_ORYSJ (e_value=2e-16) Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2;; (*TAIR) AT2G21890.1 (e_value=3e-16) | Symbols: CAD3, ATCAD3 | cinnamyl alcohol dehydrogenase homolog 3 | chr2:9331089-9332646 FORWARD LENGTH=375;; (*ITAG) Solyc02g069250.2.1 (e_value=1e-34) genomic_reference:SL2.40ch02 gene_region:33766134-33768061 transcript_region:SL2.40ch02:33766134..33768061- go_terms:GO:0045551 functional_description:"Cinnamyl alcohol dehydrogenase-like protein (AHRD V1 **** A9PHZ1_POPTR); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0045551 NbS00007407g0003.1 protein NbS00012914g0007.1 protein NbS00012914g0008.1 protein NbS00032681g0005.1 protein NbS00031550g0002.1 protein ; (*GB) gi|255561807|ref|XP_002521913.1| (e_value=3e-14) PLE, putative [Ricinus communis];; (*SWP) sp|Q9SIS3|MA656_ARATH (e_value=1e-13) 65-kDa microtubule-associated protein 6 OS=Arabidopsis thaliana GN=MAP65-6 PE=1 SV=1;; (*TAIR) AT2G01910.2 (e_value=1e-14) | Symbols: ATMAP65-6, MAP65-6 | Microtubule associated protein (MAP65/ASE1) family protein | chr2:417698-420182 FORWARD LENGTH=567;; (*ITAG) Solyc01g005080.2.1 (e_value=6e-27) genomic_reference:SL2.40ch01 gene_region:67325-72180 transcript_region:SL2.40ch01:67325..72180- go_terms:GO:0008017 functional_description:"Microtubule-associated protein MAP65-1a (AHRD V1 **** C0J9Z7_ORYNI); contains Interpro domain(s) IPR007145 MAP65/ASE1 "; GO:0008017 NbS00017993g0001.1 protein NbS00012734g0002.1 protein NbS00015742g0007.1 protein NbS00026621g0007.1 protein NbS00032572g0006.1 protein NbS00032572g0007.1 protein NbS00032572g0009.1 protein NbS00009231g0004.1 protein ; (*GB) gi|350538935|ref|NP_001234110.1| (e_value=3e-26) similar to ATP synthase subunit H protein precursor [Solanum lycopersicum];; (*TAIR) AT5G55290.2 (e_value=4e-24) | Symbols: | ATPase, V0 complex, subunit E | chr5:22423037-22424086 REVERSE LENGTH=70;; (*ITAG) Solyc07g049710.2.1 (e_value=6e-29) genomic_reference:SL2.40ch07 gene_region:57380031-57384945 transcript_region:SL2.40ch07:57380031..57384945- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit e (AHRD V1 **** VA0E_CAEEL); contains Interpro domain(s) IPR008389 ATPase, V0 complex, subunit E "; GO:0005515,GO:0046961 NbS00035533g0003.1 protein NbS00012825g0002.1 protein NbS00012825g0003.1 protein NbS00013373g0003.1 protein NbS00006358g0013.1 protein ; (*GB) gi|212720595|ref|NP_001131301.1| (e_value=1e-18) uncharacterized protein LOC100192614 [Zea mays];; (*TAIR) AT1G27385.1 (e_value=2e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF493 (InterPro:IPR007454); Has 76 Blast hits to 76 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:9511129-9512820 REVERSE LENGTH=202; NbS00006358g0014.1 protein NbS00006358g0007.1 protein NbS00013669g0004.1 protein NbS00013669g0007.1 protein NbS00022836g0004.1 protein NbS00051418g0006.1 protein NbS00030118g0007.1 protein NbS00021935g0002.1 protein NbS00004654g0003.1 protein NbS00004654g0004.1 protein NbS00023188g0002.1 protein NbS00000453g0006.1 protein ; (*ITAG) Solyc01g100020.2.1 (e_value=8e-14) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00014785g0003.1 protein NbS00018368g0011.1 protein NbS00018368g0007.1 protein NbS00020056g0107.1 protein NbS00000363g0005.1 protein ; (*GB) gi|388492772|gb|AFK34452.1| (e_value=2e-17) unknown [Medicago truncatula];; (*SWP) sp|P49692|RL7A1_ARATH (e_value=7e-18) 60S ribosomal protein L7a-1 OS=Arabidopsis thaliana GN=RPL7AA PE=1 SV=2;; (*TAIR) AT2G47610.1 (e_value=5e-19) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr2:19529854-19531401 FORWARD LENGTH=257;; (*ITAG) Solyc06g050120.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:28971861-28974038 transcript_region:SL2.40ch06:28971861..28974038+ go_terms:GO:0003735 functional_description:"Ribosomal protein L7a (AHRD V1 ***- A8J567_CHLRE); contains Interpro domain(s) IPR001921 Ribosomal protein L7A "; GO:0003735 NbS00044920g0003.1 protein ; (*ITAG) Solyc12g099420.1.1 (e_value=1e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00044920g0004.1 protein ; (*GB) gi|255551827|ref|XP_002516959.1| (e_value=2e-17) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc12g099420.1.1 (e_value=2e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64912772-64921636 transcript_region:SL2.40ch12:64912772..64921636+ functional_description:"Condensin-2 complex subunit H2 (AHRD V1 *-*- CNDH2_XENTR); contains Interpro domain(s) IPR009378 Protein of unknown function DUF1032 "; NbS00016984g0001.1 protein ; (*GB) gi|356555618|ref|XP_003546127.1| (e_value=1e-18) PREDICTED: TVP38/TMEM64 family membrane protein slr0305-like [Glycine max];; (*ITAG) Solyc01g080110.2.1 (e_value=1e-26) genomic_reference:SL2.40ch01 gene_region:71770948-71783098 transcript_region:SL2.40ch01:71770948..71783098- functional_description:"SNARE associated Golgi protein (AHRD V1 **-- C7LQY4_DESBD); contains Interpro domain(s) IPR015414 SNARE associated Golgi protein "; NbS00008327g0001.1 protein NbS00008327g0002.1 protein NbS00022724g0004.1 protein NbS00022724g0006.1 protein NbS00022724g0008.1 protein NbS00032094g0011.1 protein NbS00032094g0012.1 protein NbS00032094g0007.1 protein NbS00055099g0001.1 protein ; (*ITAG) Solyc03g115540.1.1 (e_value=6e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:59265019-59267254 transcript_region:SL2.40ch03:59265019..59267254+ go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00001677g0002.1 protein NbS00001677g0003.1 protein NbS00001677g0004.1 protein NbS00042004g0002.1 protein NbS00003996g0008.1 protein NbS00005605g0003.1 protein ; (*GB) gi|297833206|ref|XP_002884485.1| (e_value=6e-64) hypothetical protein ARALYDRAFT_340666 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G48860.2 (e_value=7e-56) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). | chr3:18117619-18121853 FORWARD LENGTH=577;; (*ITAG) Solyc03g118390.2.1 (e_value=2e-62) genomic_reference:SL2.40ch03 gene_region:61331348-61340606 transcript_region:SL2.40ch03:61331348..61340606- functional_description:"Chromosome 14 contig 1 DNA sequence (AHRD V1 *-*- Q00WF1_OSTTA)"; NbS00005605g0005.1 protein NbS00005605g0006.1 protein NbS00039959g0001.1 protein NbS00034748g0003.1 protein NbS00004015g0003.1 protein NbS00004941g0002.1 protein NbS00004941g0306.1 protein NbS00004941g0308.1 protein NbS00050747g0002.1 protein NbS00034187g0002.1 protein NbS00047658g0008.1 protein NbS00013166g0003.1 protein ; (*ITAG) Solyc08g066500.2.1 (e_value=1e-12) genomic_reference:SL2.40ch08 gene_region:52415522-52421037 transcript_region:SL2.40ch08:52415522..52421037- go_terms:GO:0003700 functional_description:"Class III homeodomain-leucine zipper (AHRD V1 ***- Q1WD30_GINBI); contains Interpro domain(s) IPR013978 MEKHLA "; GO:0003700 NbS00015416g0012.1 protein NbS00015416g0008.1 protein NbS00010994g0001.1 protein NbS00027159g0006.1 protein NbS00029394g0004.1 protein ; (*GB) gi|351724405|ref|NP_001235009.1| (e_value=4e-44) uncharacterized protein LOC100500228 [Glycine max];; (*TAIR) AT2G36145.1 (e_value=2e-34) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15168571-15169373 FORWARD LENGTH=186;; (*ITAG) Solyc09g010120.2.1 (e_value=4e-52) genomic_reference:SL2.40ch09 gene_region:3499761-3502328 transcript_region:SL2.40ch09:3499761..3502328- functional_description:"Unknown Protein (AHRD V1)"; NbS00035001g0011.1 protein NbS00050823g0004.1 protein ; (*GB) gi|255575740|ref|XP_002528769.1| (e_value=1e-85) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G45470.1 (e_value=4e-79) | Symbols: | Protein of unknown function (DUF594) | chr5:18422164-18424764 REVERSE LENGTH=866;; (*ITAG) Solyc12g094650.1.1 (e_value=8e-54) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00010382g0108.1 protein NbS00010382g0215.1 protein NbS00036789g0004.1 protein NbS00013129g0005.1 protein ; (*GB) gi|297737435|emb|CBI26636.3| (e_value=7e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc12g005020.1.1 (e_value=4e-25) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:10618-11752 transcript_region:SL2.40ch12:10618..11752- go_terms:GO:0005141 functional_description:"Ring H2 finger protein (AHRD V1 *-*- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0005141 NbS00015761g0003.1 protein ; (*GB) gi|357435985|ref|XP_003588268.1| (e_value=7e-15) NADH-ubiquinone oxidoreductase chain [Medicago truncatula]; NbS00009382g0005.1 protein NbS00060579g0003.1 protein NbS00006784g0008.1 protein NbS00020813g0005.1 protein NbS00030610g0012.1 protein NbS00022480g0011.1 protein NbS00022480g0010.1 protein NbS00001512g0004.1 protein ; (*GB) gi|255556614|ref|XP_002519341.1| (e_value=1e-18) Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis];; (*TAIR) AT1G48310.1 (e_value=5e-17) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00001150g0011.1 protein ; (*GB) gi|359474003|ref|XP_002276077.2| (e_value=2e-34) PREDICTED: putative transporter arsB isoform 1 [Vitis vinifera];; (*SWP) sp|Q54GU0|ARSB_DICDI (e_value=3e-12) Putative transporter arsB OS=Dictyostelium discoideum GN=arsB PE=2 SV=1;; (*TAIR) AT1G02260.1 (e_value=2e-28) | Symbols: | Divalent ion symporter | chr1:440757-442459 REVERSE LENGTH=502;; (*ITAG) Solyc06g036100.2.1 (e_value=3e-39) genomic_reference:SL2.40ch06 gene_region:22211265-22213759 transcript_region:SL2.40ch06:22211265..22213759- go_terms:GO:0015446 functional_description:"Citrate transporter family protein (AHRD V1 ***- B6U1B5_MAIZE); contains Interpro domain(s) IPR004680 Divalent ion symporter "; GO:0015446 NbS00001150g0007.1 protein NbS00051240g0008.1 protein NbS00012077g0007.1 protein NbS00016942g0008.1 protein NbS00016942g0010.1 protein NbS00006760g0001.1 protein NbS00020415g0003.1 protein NbS00000229g0011.1 protein NbS00000229g0012.1 protein NbS00014502g0006.1 protein ; (*ITAG) Solyc00g023590.2.1 (e_value=2e-21) genomic_reference:SL2.40ch00 gene_region:12141025-12143724 transcript_region:SL2.40ch00:12141025..12143724+ functional_description:"Unknown Protein (AHRD V1)"; NbS00027134g0002.1 protein ; (*GB) gi|388498376|gb|AFK37254.1| (e_value=1e-25) unknown [Medicago truncatula]; NbS00047306g0007.1 protein ; (*SWP) sp|Q96303|PHT14_ARATH (e_value=2e-14) Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1;; (*TAIR) AT2G38940.1 (e_value=2e-15) | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;4 | chr2:16258500-16260104 FORWARD LENGTH=534;; (*ITAG) Solyc03g005560.1.1 (e_value=9e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00007616g0009.1 protein NbS00007616g0010.1 protein ; (*GB) gi|169674678|gb|ACA64705.1| (e_value=1e-14) subtilase [Nicotiana tabacum];; (*ITAG) Solyc10g084320.1.1 (e_value=2e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:63240593-63242908 transcript_region:SL2.40ch10:63240593..63242908+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 **-- O82777_SOLLC); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00007557g0007.1 protein NbS00010285g0006.1 protein NbS00011565g0004.1 protein NbS00011565g0006.1 protein NbS00056148g0004.1 protein NbS00040377g0002.1 protein NbS00000079g0102.1 protein NbS00049758g0003.1 protein ; (*GB) gi|218187491|gb|EEC69918.1| (e_value=4e-30) hypothetical protein OsI_00339 [Oryza sativa Indica Group]; NbS00000617g0011.1 protein ; (*GB) gi|255561889|ref|XP_002521953.1| (e_value=4e-13) myosin XI, putative [Ricinus communis];; (*TAIR) AT1G54560.1 (e_value=4e-14) | Symbols: XIE, ATXIE | Myosin family protein with Dil domain | chr1:20371649-20379745 REVERSE LENGTH=1529;; (*ITAG) Solyc06g083960.1.1 (e_value=1e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:45526326-45540260 transcript_region:SL2.40ch06:45526326..45540260- go_terms:GO:0042803 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00000617g0007.1 protein NbS00000617g0009.1 protein NbS00011005g0010.1 protein NbS00011452g0011.1 protein NbS00011452g0012.1 protein NbS00011452g0007.1 protein NbS00011452g0009.1 protein NbS00010322g0007.1 protein NbS00003348g0002.1 protein ; (*GB) gi|296087276|emb|CBI33650.3| (e_value=3e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16120.1 (e_value=5e-31) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:5266048-5267775 FORWARD LENGTH=351;; (*ITAG) Solyc02g063160.2.1 (e_value=7e-35) genomic_reference:SL2.40ch02 gene_region:29811816-29817553 transcript_region:SL2.40ch02:29811816..29817553+ go_terms:GO:0008289,GO:0004622 functional_description:"Lipase-like protein (AHRD V1 **-- Q9LF16_ARATH); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0008289,GO:0004622 NbS00039219g0006.1 protein NbS00008464g0005.1 protein ; (*GB) gi|224067848|ref|XP_002302563.1| (e_value=1e-50) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9CAA8|PP108_ARATH (e_value=5e-24) Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1;; (*TAIR) AT3G61170.1 (e_value=3e-48) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:22638691-22641237 REVERSE LENGTH=783;; (*ITAG) Solyc01g091610.1.1 (e_value=1e-64) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00006793g0104.1 protein NbS00006793g0106.1 protein NbS00053870g0001.1 protein NbS00010134g0005.1 protein NbS00019806g0004.1 protein NbS00019806g0007.1 protein NbS00032249g0011.1 protein NbS00020800g0001.1 protein ; (*GB) gi|14715183|emb|CAC44080.1| (e_value=4e-22) putative MADS-domain transcription factor DEFH7 [Antirrhinum majus];; (*ITAG) Solyc03g019710.2.1 (e_value=3e-30) genomic_reference:SL2.40ch03 gene_region:6652676-6656225 transcript_region:SL2.40ch03:6652676..6656225+ go_terms:GO:0046982 functional_description:"MADS-box transcription factor (AHRD V1 ***- Q5KT55_9ASPA); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0046982 NbS00024029g0002.1 protein NbS00021022g0008.1 protein NbS00031393g0010.1 protein NbS00031393g0105.1 protein NbS00045136g0002.1 protein NbS00007744g0001.1 protein NbS00007436g0014.1 protein NbS00034021g0007.1 protein ; (*GB) gi|27728149|gb|AAN15319.1| (e_value=4e-22) isoamylase isoform 3 [Solanum tuberosum];; (*SWP) sp|Q9M0S5|ISOA3_ARATH (e_value=2e-14) Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2;; (*TAIR) AT4G09020.1 (e_value=1e-15) | Symbols: ATISA3, ISA3 | isoamylase 3 | chr4:5784099-5788839 FORWARD LENGTH=764;; (*ITAG) Solyc06g009220.2.1 (e_value=2e-25) genomic_reference:SL2.40ch06 gene_region:3155576-3182364 transcript_region:SL2.40ch06:3155576..3182364+ go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00033935g0004.1 protein NbS00024009g0008.1 protein NbS00037795g0001.1 protein ; (*ITAG) Solyc03g113610.2.1 (e_value=3e-16) genomic_reference:SL2.40ch03 gene_region:57734164-57739928 transcript_region:SL2.40ch03:57734164..57739928- functional_description:"Protein CLP1 homolog (AHRD V1 **-- CLP1_BRUMA); contains Interpro domain(s) IPR012581 NUC156 "; NbS00016479g0008.1 protein NbS00006996g0008.1 protein NbS00021051g0004.1 protein NbS00021051g0005.1 protein NbS00029188g0001.1 protein NbS00034975g0005.1 protein NbC23833409g0001.1 protein ; (*ITAG) Solyc09g018960.2.1 (e_value=3e-24) genomic_reference:SL2.40ch09 gene_region:17739610-17753558 transcript_region:SL2.40ch09:17739610..17753558- go_terms:GO:0031072 functional_description:"UBA/TS-N domain protein (AHRD V1 *--- B0Y4B6_ASPFC); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00029202g0003.1 protein NbS00003391g0005.1 protein NbS00017314g0003.1 protein NbS00025985g0004.1 protein ; (*GB) gi|225444903|ref|XP_002281869.1| (e_value=1e-21) PREDICTED: translation machinery-associated protein 22 [Vitis vinifera];; (*TAIR) AT5G11900.1 (e_value=1e-23) | Symbols: | Translation initiation factor SUI1 family protein | chr5:3834154-3836023 FORWARD LENGTH=198;; (*ITAG) Solyc12g008910.1.1 (e_value=7e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2227329-2231903 transcript_region:SL2.40ch12:2227329..2231903+ go_terms:GO:0006413 functional_description:"Density-regulated protein (AHRD V1 ***- B6SQI8_MAIZE); contains Interpro domain(s) IPR005873 Density-regulated protein DRP1 "; GO:0006413 NbS00003810g0001.1 protein NbS00034069g0001.1 protein ; (*GB) gi|224143693|ref|XP_002325043.1| (e_value=2e-23) predicted protein [Populus trichocarpa];; (*SWP) sp|O65194|RBS_MEDSA (e_value=3e-18) Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1;; (*TAIR) AT1G67090.2 (e_value=1e-16) | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048590-25049249 REVERSE LENGTH=136;; (*ITAG) Solyc07g017950.2.1 (e_value=5e-25) genomic_reference:SL2.40ch07 gene_region:8636547-8638555 transcript_region:SL2.40ch07:8636547..8638555+ go_terms:GO:0005515,GO:0005507 functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- C6T529_SOYBN); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "; GO:0005515,GO:0005507 NbS00002693g0002.1 protein NbS00002693g0105.1 protein NbS00040456g0002.1 protein NbS00040456g0003.1 protein NbS00040456g0005.1 protein NbS00041505g0001.1 protein NbS00053227g0004.1 protein NbS00029668g0001.1 protein NbS00009035g0011.1 protein NbS00014913g0004.1 protein NbS00009972g0103.1 protein NbS00053242g0003.1 protein NbS00020712g0003.1 protein NbS00046695g0003.1 protein NbS00046695g0004.1 protein ; (*ITAG) Solyc08g006030.2.1 (e_value=3e-16) genomic_reference:SL2.40ch08 gene_region:790657-797712 transcript_region:SL2.40ch08:790657..797712- functional_description:"Unknown Protein (AHRD V1)"; NbS00016589g0105.1 protein NbS00016589g0106.1 protein NbS00042246g0004.1 protein NbS00011717g0005.1 protein NbS00005861g0005.1 protein NbS00018448g0002.1 protein NbS00034275g0002.1 protein NbS00034275g0004.1 protein NbS00008658g0003.1 protein NbS00015797g0001.1 protein NbS00009212g0003.1 protein NbS00003776g0002.1 protein NbS00017497g0002.1 protein NbC24088562g0001.1 protein ; (*GB) gi|166245154|dbj|BAG06269.1| (e_value=1e-40) cellulose synthase Z811 [Zinnia elegans];; (*SWP) sp|Q9SWW6|CESA7_ARATH (e_value=8e-38) Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1;; (*TAIR) AT5G17420.1 (e_value=6e-39) | Symbols: IRX3, CESA7, ATCESA7, MUR10 | Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026;; (*ITAG) Solyc07g005840.2.1 (e_value=2e-41) genomic_reference:SL2.40ch07 gene_region:667374-673097 transcript_region:SL2.40ch07:667374..673097+ go_terms:GO:0016759 functional_description:"Cellulose synthase 3 (AHRD V1 **** Q2IB41_EUCGR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00005012g0011.1 protein ; (*GB) gi|336112676|gb|AEI17666.1| (e_value=1e-18) vacuolar H+-pyrophosphatase [Salicornia europaea];; (*SWP) sp|P31414|AVP1_ARATH (e_value=2e-18) Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1;; (*TAIR) AT1G15690.1 (e_value=1e-19) | Symbols: AVP1, ATAVP3, AVP-3, AtVHP1;1 | Inorganic H pyrophosphatase family protein | chr1:5399115-5402185 FORWARD LENGTH=770;; (*ITAG) Solyc06g068240.2.1 (e_value=3e-21) genomic_reference:SL2.40ch06 gene_region:38687848-38692383 transcript_region:SL2.40ch06:38687848..38692383+ go_terms:GO:0009678 functional_description:"Pyrophosphate-energized proton pump (AHRD V1 ***- B0SRX3_LEPBP); contains Interpro domain(s) IPR004131 Inorganic H+ pyrophosphatase "; GO:0009678 NbS00005012g0010.1 protein NbS00034041g0005.1 protein NbS00014263g0001.1 protein ; (*ITAG) Solyc04g025510.2.1 (e_value=3e-22) genomic_reference:SL2.40ch04 gene_region:21084261-21086681 transcript_region:SL2.40ch04:21084261..21086681- functional_description:"Os02g0194300 protein (Fragment) (AHRD V1 *-*- Q0E347_ORYSJ); contains Interpro domain(s) IPR014854 Nse4 "; NbS00032423g0006.1 protein NbS00032423g0007.1 protein ; (*GB) gi|356522069|ref|XP_003529672.1| (e_value=6e-25) PREDICTED: cytochrome P450 71D8-like [Glycine max];; (*SWP) sp|A6YIH8|C7D55_HYOMU (e_value=1e-22) Premnaspirodiene oxygenase OS=Hyoscyamus muticus GN=CYP71D55 PE=1 SV=1;; (*TAIR) AT2G45570.1 (e_value=1e-17) | Symbols: CYP76C2 | cytochrome P450, family 76, subfamily C, polypeptide 2 | chr2:18779935-18781922 REVERSE LENGTH=512;; (*ITAG) Solyc08g005650.2.1 (e_value=2e-33) genomic_reference:SL2.40ch08 gene_region:510830-512970 transcript_region:SL2.40ch08:510830..512970- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00050011g0001.1 protein ; (*GB) gi|351653907|ref|YP_004891653.1| (e_value=7e-26) unnamed protein product (chloroplast) [Nicotiana undulata]; NbS00020785g0004.1 protein NbS00008194g0004.1 protein NbS00016115g0004.1 protein NbS00016115g0005.1 protein NbS00025628g0003.1 protein NbS00004653g0001.1 protein NbS00005989g0004.1 protein NbS00007003g0003.1 protein NbS00042073g0003.1 protein NbS00042073g0005.1 protein NbS00007138g0009.1 protein ; (*GB) gi|225454817|ref|XP_002274926.1| (e_value=6e-45) PREDICTED: ADP-ribosylation factor [Vitis vinifera];; (*SWP) sp|P61212|ARL1_RAT (e_value=1e-21) ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1;; (*TAIR) AT5G17060.1 (e_value=3e-44) | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor B1B | chr5:5611056-5612639 FORWARD LENGTH=192;; (*ITAG) Solyc06g072800.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:41285773-41291236 transcript_region:SL2.40ch06:41285773..41291236+ go_terms:GO:0005525,GO:0005622 functional_description:"ADP-ribosylation factor (AHRD V1 ***- Q5FYS3_DAUCA); contains Interpro domain(s) IPR006688 ADP-ribosylation factor "; GO:0005525,GO:0005622 NbS00016091g0002.1 protein NbS00033044g0001.1 protein ; (*GB) gi|255585492|ref|XP_002533438.1| (e_value=3e-24) transcription factor, putative [Ricinus communis];; (*SWP) sp|Q9M2K8|AGL18_ARATH (e_value=6e-14) Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1;; (*TAIR) AT3G57390.2 (e_value=2e-15) | Symbols: AGL18 | AGAMOUS-like 18 | chr3:21234613-21235735 FORWARD LENGTH=195;; (*ITAG) Solyc10g080030.1.1 (e_value=5e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:60766981-60769749 transcript_region:SL2.40ch10:60766981..60769749+ go_terms:GO:0005634 functional_description:"MADS box transcription factor (AHRD V1 ***- Q6RF31_POPTO); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005634 NbS00018786g0011.1 protein ; (*TAIR) AT1G58250.1 (e_value=2e-13) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc12g088010.1.1 (e_value=1e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00018786g0014.1 protein ; (*ITAG) Solyc12g088010.1.1 (e_value=3e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00018786g0007.1 protein ; (*GB) gi|359492962|ref|XP_003634489.1| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100254031 isoform 2 [Vitis vinifera];; (*TAIR) AT1G58250.2 (e_value=2e-14) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2655;; (*ITAG) Solyc12g088010.1.1 (e_value=9e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61941723-61966003 transcript_region:SL2.40ch12:61941723..61966003- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00018786g0008.1 protein NbS00018786g0009.1 protein NbS00018786g0010.1 protein NbS00043676g0001.1 protein ; (*GB) gi|147857524|emb|CAN80335.1| (e_value=7e-18) hypothetical protein VITISV_009414 [Vitis vinifera];; (*TAIR) AT1G16180.2 (e_value=2e-20) | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr1:5540905-5542670 FORWARD LENGTH=412;; (*ITAG) Solyc03g117770.2.1 (e_value=7e-21) genomic_reference:SL2.40ch03 gene_region:60854347-60859485 transcript_region:SL2.40ch03:60854347..60859485+ go_terms:GO:0005515,GO:0015194 functional_description:"Serine incorporator 1 (AHRD V1 **-* B5X3W1_SALSA); contains Interpro domain(s) IPR005016 TMS membrane protein/tumour differentially expressed protein "; GO:0005515,GO:0015194 NbS00050133g0003.1 protein NbS00015061g0003.1 protein NbS00015061g0004.1 protein NbS00015061g0008.1 protein NbS00018632g0004.1 protein NbS00016403g0001.1 protein NbS00010006g0004.1 protein NbS00022995g0007.1 protein NbC24497165g0001.1 protein NbS00017213g0017.1 protein ; (*ITAG) Solyc01g100330.2.1 (e_value=5e-15) genomic_reference:SL2.40ch01 gene_region:82155691-82161827 transcript_region:SL2.40ch01:82155691..82161827+ go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger matrin type 2 (AHRD V1 ***- Q6DEN8_XENTR); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00017325g0001.1 protein NbS00017325g0002.1 protein NbS00013692g0003.1 protein NbS00050280g0003.1 protein NbS00022345g0011.1 protein NbS00011009g0006.1 protein NbS00009733g0011.1 protein NbS00009733g0009.1 protein ; (*ITAG) Solyc02g071180.2.1 (e_value=6e-17) genomic_reference:SL2.40ch02 gene_region:35240539-35248906 transcript_region:SL2.40ch02:35240539..35248906- functional_description:"TA9 protein (Fragment) (AHRD V1 *--- Q70KT1_ORYSJ); contains Interpro domain(s) IPR009719 Protein of unknown function DUF1296 "; NbC23809551g0001.1 protein ; (*GB) gi|350534600|ref|NP_001234149.1| (e_value=7e-48) ethylene receptor 1 [Solanum lycopersicum];; (*SWP) sp|Q41342|ETR1_SOLLC (e_value=2e-49) Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1;; (*TAIR) AT1G66340.1 (e_value=8e-47) | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738;; (*ITAG) Solyc12g011330.2.1 (e_value=1e-50) genomic_reference:SL2.40ch12 gene_region:4164579-4175035 transcript_region:SL2.40ch12:4164579..4175035+ go_terms:GO:0051740 functional_description:"Ethylene receptor (Fragment) (AHRD V1 **** C0KTA0_9ROSA); contains Interpro domain(s) IPR014525 Signal transduction histidine kinase, hybrid-type, ethylene sensor "; GO:0051740 NbS00031070g0009.1 protein ; (*ITAG) Solyc07g064210.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00032335g0006.1 protein ; (*GB) gi|255538832|ref|XP_002510481.1| (e_value=2e-17) tetratricopeptide repeat protein, tpr, putative [Ricinus communis];; (*SWP) sp|O23052|Y1515_ARATH (e_value=4e-18) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=3e-19) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=4e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00040645g0001.1 protein NbS00005701g0005.1 protein NbS00005701g0007.1 protein NbS00005701g0008.1 protein NbS00044931g0002.1 protein NbS00006470g0002.1 protein NbS00047689g0001.1 protein NbS00002720g0008.1 protein NbS00002720g0106.1 protein NbS00002720g0107.1 protein NbS00002720g0110.1 protein NbS00017952g0004.1 protein NbS00010260g0005.1 protein NbS00010260g0006.1 protein NbS00010260g0007.1 protein NbS00032151g0004.1 protein NbS00000953g0002.1 protein NbS00034532g0008.1 protein NbS00034532g0009.1 protein NbS00031741g0003.1 protein NbS00043176g0003.1 protein NbS00003543g0004.1 protein NbS00003543g0006.1 protein NbS00001756g0013.1 protein NbS00001756g0005.1 protein ; (*TAIR) AT2G19440.1 (e_value=1e-13) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr2:8418164-8419806 REVERSE LENGTH=478;; (*ITAG) Solyc10g078510.1.1 (e_value=2e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59632402-59635099 transcript_region:SL2.40ch10:59632402..59635099+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 5 (AHRD V1 ***- B6SXV6_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00001756g0009.1 protein NbS00001756g0010.1 protein ; (*ITAG) Solyc02g080570.2.1 (e_value=7e-15) genomic_reference:SL2.40ch02 gene_region:39335872-39353189 transcript_region:SL2.40ch02:39335872..39353189+ go_terms:GO:0009011 functional_description:"Glycogen synthase (AHRD V1 *-** D4ZXV2_SPIPL); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0009011 NbS00028908g0010.1 protein NbS00048686g0002.1 protein NbS00048686g0003.1 protein NbS00019277g0004.1 protein NbS00019277g0006.1 protein ; (*GB) gi|156103424|gb|ABU48860.1| (e_value=1e-27) fucosyltransferase 1 [Nicotiana benthamiana];; (*ITAG) Solyc01g108110.2.1 (e_value=6e-18) genomic_reference:SL2.40ch01 gene_region:87225177-87233490 transcript_region:SL2.40ch01:87225177..87233490+ go_terms:GO:0017083,GO:0018392 functional_description:"Alpha 1 3 fucosyltransferase (AHRD V1 **** Q5DTC8_MEDSA); contains Interpro domain(s) IPR001503 Glycosyl transferase, family 10 "; GO:0017083,GO:0018392 NbS00019277g0007.1 protein NbS00000833g0013.1 protein NbS00000833g0016.1 protein NbS00000833g0019.1 protein NbS00000833g0009.1 protein NbS00034568g0004.1 protein ; (*ITAG) Solyc05g052780.2.1 (e_value=5e-14) genomic_reference:SL2.40ch05 gene_region:62108501-62112460 transcript_region:SL2.40ch05:62108501..62112460+ go_terms:GO:0005246,GO:0042802 functional_description:"LIM domain protein (AHRD V1 **-- Q8VWW1_GOSHI); contains Interpro domain(s) IPR001781 Zinc finger, LIM-type "; GO:0005246,GO:0042802 NbS00026246g0006.1 protein NbS00004103g0204.1 protein NbS00004103g0210.1 protein NbS00008655g0003.1 protein NbS00017075g0007.1 protein NbS00027525g0003.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-61) PREDICTED: uncharacterized protein LOC100795315 [Glycine max];; (*TAIR) AT1G40087.1 (e_value=1e-12) | Symbols: | Plant transposase (Ptta/En/Spm family) | chr1:14999762-15001868 REVERSE LENGTH=390; NbS00027525g0004.1 protein NbS00044690g0002.1 protein NbS00036271g0006.1 protein NbS00022326g0012.1 protein NbS00022326g0017.1 protein NbS00029678g0001.1 protein NbS00051156g0003.1 protein ; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-11) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc03g093100.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00000446g0002.1 protein NbS00000446g0003.1 protein NbS00000446g0004.1 protein NbS00000446g0006.1 protein NbS00003093g0002.1 protein NbS00026934g0003.1 protein NbC23709198g0001.1 protein ; (*GB) gi|73656868|gb|AAZ79373.1| (e_value=6e-37) internal-motor kinesin [Nicotiana tabacum];; (*TAIR) AT3G16630.2 (e_value=9e-32) | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:5662660-5667261 REVERSE LENGTH=794;; (*ITAG) Solyc05g054260.2.1 (e_value=7e-39) genomic_reference:SL2.40ch05 gene_region:63358902-63368392 transcript_region:SL2.40ch05:63358902..63368392- go_terms:GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q940B8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00038823g0001.1 protein NbS00014307g0004.1 protein NbS00019405g0011.1 protein NbS00019405g0013.1 protein NbS00019774g0005.1 protein NbS00018384g0009.1 protein ; (*GB) gi|359478143|ref|XP_002269633.2| (e_value=8e-15) PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Vitis vinifera];; (*ITAG) Solyc12g021130.1.1 (e_value=1e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:14337142-14346988 transcript_region:SL2.40ch12:14337142..14346988+ go_terms:GO:0008152,GO:0006694,GO:0005783 functional_description:"3-beta-hydroxysteroid dehydrogenase-like (AHRD V1 ***- Q69IL0_ORYSJ); contains Interpro domain(s) IPR002225 3-beta hydroxysteroid dehydrogenase/isomerase "; GO:0008152,GO:0006694,GO:0005783 NbS00028424g0004.1 protein NbS00033590g0005.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-10) RNase H family protein [Solanum demissum]; NbS00033590g0007.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-40) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00029573g0013.1 protein NbS00029573g0008.1 protein NbS00037197g0002.1 protein ; (*GB) gi|356536234|ref|XP_003536644.1| (e_value=2e-44) PREDICTED: tetratricopeptide repeat protein 5-like [Glycine max];; (*ITAG) Solyc05g008420.2.1 (e_value=2e-37) genomic_reference:SL2.40ch05 gene_region:2776889-2784084 transcript_region:SL2.40ch05:2776889..2784084+ go_terms:GO:0005488 functional_description:"Tetratricopeptide repeat protein 5 (AHRD V1 ***- TTC5_RAT); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00006039g0011.1 protein NbS00006039g0010.1 protein ; (*GB) gi|357517641|ref|XP_003629109.1| (e_value=1e-66) Ankyrin repeat protein [Medicago truncatula];; (*SWP) sp|Q4UMH6|Y381_RICFE (e_value=1e-11) Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1;; (*TAIR) AT4G10720.1 (e_value=7e-59) | Symbols: | Ankyrin repeat family protein | chr4:6607879-6609358 FORWARD LENGTH=445;; (*ITAG) Solyc06g074280.2.1 (e_value=3e-58) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00018945g0004.1 protein NbS00057401g0006.1 protein NbS00031858g0001.1 protein NbS00043962g0004.1 protein NbS00007214g0002.1 protein NbS00023097g0003.1 protein NbS00001539g0105.1 protein NbS00001539g0106.1 protein NbS00001539g0107.1 protein NbS00020385g0005.1 protein NbS00020385g0008.1 protein NbS00048868g0006.1 protein NbS00029242g0004.1 protein NbS00032905g0001.1 protein ; (*GB) gi|359483452|ref|XP_002270330.2| (e_value=1e-16) PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera];; (*TAIR) AT2G32950.1 (e_value=3e-13) | Symbols: COP1, ATCOP1, DET340, FUS1, EMB168 | Transducin/WD40 repeat-like superfamily protein | chr2:13978000-13983282 FORWARD LENGTH=675;; (*ITAG) Solyc11g011980.1.1 (e_value=5e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:4927052-4931762 transcript_region:SL2.40ch11:4927052..4931762- go_terms:GO:0008270 functional_description:"WD-40 repeat protein (AHRD V1 *--- B2J557_NOSP7); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0008270 NbS00000647g0006.1 protein NbS00025650g0001.1 protein ; (*GB) gi|225429760|ref|XP_002280516.1| (e_value=7e-21) PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like [Vitis vinifera];; (*SWP) sp|Q8VYD6|PP374_ARATH (e_value=2e-16) Pentatricopeptide repeat-containing protein At5g10690 OS=Arabidopsis thaliana GN=CBSPPR1 PE=2 SV=1;; (*TAIR) AT5G10690.1 (e_value=1e-17) | Symbols: | pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein | chr5:3374443-3377332 REVERSE LENGTH=580;; (*ITAG) Solyc08g069010.2.1 (e_value=3e-31) genomic_reference:SL2.40ch08 gene_region:55300249-55313870 transcript_region:SL2.40ch08:55300249..55313870+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2Z4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00031126g0003.1 protein NbS00031126g0006.1 protein ; (*GB) gi|225456441|ref|XP_002284366.1| (e_value=1e-19) PREDICTED: ubiquitin-conjugating enzyme E2 27 isoform 1 [Vitis vinifera];; (*TAIR) AT5G50870.1 (e_value=3e-14) | Symbols: UBC27 | ubiquitin-conjugating enzyme 27 | chr5:20699626-20700998 REVERSE LENGTH=192;; (*ITAG) Solyc06g072570.2.1 (e_value=5e-20) genomic_reference:SL2.40ch06 gene_region:41145493-41149587 transcript_region:SL2.40ch06:41145493..41149587+ go_terms:GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 1 (AHRD V1 **** UBC1_SCHPO); contains Interpro domain(s) IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0004842 NbC26212137g0001.1 protein NbS00027619g0001.1 protein ; (*ITAG) Solyc01g097180.2.1 (e_value=1e-16) genomic_reference:SL2.40ch01 gene_region:79882439-79883709 transcript_region:SL2.40ch01:79882439..79883709+ functional_description:"Os11g0282300 protein (Fragment) (AHRD V1 *-*- Q0ITA9_ORYSJ); contains Interpro domain(s) IPR012881 Protein of unknown function DUF1685 "; NbS00003963g0003.1 protein NbS00005517g0107.1 protein NbS00041515g0004.1 protein NbS00041515g0005.1 protein NbS00041515g0009.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=4e-37) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00041515g0010.1 protein ; (*ITAG) Solyc02g088160.2.1 (e_value=6e-16) genomic_reference:SL2.40ch02 gene_region:44899497-44904078 transcript_region:SL2.40ch02:44899497..44904078+ functional_description:"UPF0497 membrane protein Os06g0231050 (AHRD V1 *-*- U4974_ORYSJ); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00022506g0004.1 protein ; (*ITAG) Solyc00g166490.1.1 (e_value=8e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:17895968-17897863 transcript_region:SL2.40ch00:17895968..17897863+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00022506g0005.1 protein NbS00036605g0001.1 protein NbS00022914g0004.1 protein NbS00020556g0016.1 protein NbS00020556g0018.1 protein ; (*GB) gi|225437779|ref|XP_002281404.1| (e_value=4e-68) PREDICTED: protein transport protein SEC23 [Vitis vinifera];; (*TAIR) AT4G01810.1 (e_value=2e-54) | Symbols: | Sec23/Sec24 protein transport family protein | chr4:776734-779802 REVERSE LENGTH=880;; (*ITAG) Solyc01g080850.2.1 (e_value=5e-95) genomic_reference:SL2.40ch01 gene_region:72654375-72660542 transcript_region:SL2.40ch01:72654375..72660542- go_terms:GO:0030127 functional_description:"Protein transport protein SEC23 (AHRD V1 ***- C5MDU5_CANTT); contains Interpro domain(s) IPR006900 Sec23/Sec24 helical region "; GO:0030127 NbS00020556g0020.1 protein NbS00045360g0001.1 protein NbS00013524g0001.1 protein NbS00054373g0003.1 protein NbS00015224g0104.1 protein NbS00001929g0008.1 protein ; (*ITAG) Solyc12g098860.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00001929g0009.1 protein NbS00025308g0005.1 protein NbS00022419g0002.1 protein ; (*GB) gi|16417958|gb|AAL18931.1|AF429985_1 (e_value=2e-57) arabinosidase ARA-1 [Solanum lycopersicum];; (*SWP) sp|Q8VZR2|ASD2_ARATH (e_value=5e-50) Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1;; (*TAIR) AT5G26120.1 (e_value=4e-51) | Symbols: ATASD2, ASD2 | alpha-L-arabinofuranosidase 2 | chr5:9121835-9125399 REVERSE LENGTH=674;; (*ITAG) Solyc10g081120.1.1 (e_value=3e-60) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61584069-61591793 transcript_region:SL2.40ch10:61584069..61591793- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase (AHRD V1 **** Q76LU4_SOLLC); contains Interpro domain(s) IPR017853 Glycoside hydrolase, catalytic core "; GO:0009044,GO:0046556 NbS00009629g0011.1 protein NbS00020478g0002.1 protein ; (*GB) gi|224107759|ref|XP_002333466.1| (e_value=7e-32) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06440.4 (e_value=1e-19) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3). | chr5:1964641-1966807 REVERSE LENGTH=486;; (*ITAG) Solyc01g006870.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:1430746-1436275 transcript_region:SL2.40ch01:1430746..1436275- functional_description:"cDNA clone J023119C16 full insert sequence (AHRD V1 *-*- B7F733_ORYSJ)"; NbS00040500g0004.1 protein NbS00008234g0007.1 protein NbS00033060g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=5e-16) hypothetical protein [Nicotiana tabacum]; NbS00000357g0013.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=8e-17) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00022848g0004.1 protein NbS00022848g0007.1 protein ; (*GB) gi|224093784|ref|XP_002309990.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SDN0|DNJ20_ARATH (e_value=1e-16) Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2;; (*TAIR) AT4G13830.2 (e_value=1e-17) | Symbols: J20 | DNAJ-like 20 | chr4:8011518-8012577 FORWARD LENGTH=197;; (*ITAG) Solyc09g092260.2.1 (e_value=2e-17) genomic_reference:SL2.40ch09 gene_region:66746507-66748076 transcript_region:SL2.40ch09:66746507..66748076+ go_terms:GO:0031072 functional_description:"Chaperone protein dnaJ 20 (AHRD V1 ***- B6U349_MAIZE); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0031072 NbS00022848g0008.1 protein NbS00001720g0004.1 protein NbS00007406g0004.1 protein NbS00007406g0006.1 protein NbS00009741g0004.1 protein NbS00033418g0008.1 protein NbS00022423g0006.1 protein NbS00017830g0002.1 protein NbS00017830g0003.1 protein NbS00033633g0005.1 protein ; (*GB) gi|222617712|gb|EEE53844.1| (e_value=4e-15) hypothetical protein OsJ_00321 [Oryza sativa Japonica Group]; NbS00027415g0004.1 protein NbS00027415g0005.1 protein NbS00027415g0009.1 protein NbS00030853g0003.1 protein NbS00031578g0002.1 protein ; (*GB) gi|110735744|dbj|BAE99851.1| (e_value=2e-30) hypothetical protein [Arabidopsis thaliana]; NbS00008123g0002.1 protein NbS00042150g0005.1 protein NbC23525749g0001.1 protein ; (*GB) gi|297737508|emb|CBI26709.3| (e_value=2e-28) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q42545|FTSZ1_ARATH (e_value=9e-30) Cell division protein FtsZ homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSZ1 PE=1 SV=2;; (*TAIR) AT5G55280.1 (e_value=7e-31) | Symbols: FTSZ1-1, ATFTSZ1-1, CPFTSZ | homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 | chr5:22420740-22422527 REVERSE LENGTH=433;; (*ITAG) Solyc07g065050.2.1 (e_value=6e-31) genomic_reference:SL2.40ch07 gene_region:64198682-64205046 transcript_region:SL2.40ch07:64198682..64205046- go_terms:GO:0042802 functional_description:"Cell division protein ftsZ (AHRD V1 ***- B6TH29_MAIZE); contains Interpro domain(s) IPR000158 Cell division protein FtsZ, N-terminal "; GO:0042802 NbS00004914g0004.1 protein NbS00005489g0005.1 protein NbS00005551g0103.1 protein NbS00019526g0001.1 protein ; (*ITAG) Solyc05g013790.2.1 (e_value=2e-21) genomic_reference:SL2.40ch05 gene_region:7100783-7110858 transcript_region:SL2.40ch05:7100783..7110858- go_terms:GO:0005643 functional_description:"Nucleoporin GLE1 (AHRD V1 *-*- C0H9R7_SALSA); contains Interpro domain(s) IPR012476 GLE1-like "; GO:0005643 NbS00032171g0003.1 protein NbS00010124g0011.1 protein NbS00010124g0013.1 protein NbS00010124g0014.1 protein NbS00010124g0016.1 protein NbS00028902g0003.1 protein NbS00002300g0008.1 protein NbS00002300g0009.1 protein NbS00031962g0009.1 protein NbS00005577g0003.1 protein NbS00005577g0004.1 protein NbS00004373g0002.1 protein NbS00004373g0105.1 protein NbS00018752g0004.1 protein ; (*ITAG) Solyc09g011280.1.1 (e_value=5e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:4613409-4613945 transcript_region:SL2.40ch09:4613409..4613945+ go_terms:GO:0030599 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00018752g0005.1 protein NbS00021413g0004.1 protein NbS00022308g0005.1 protein NbS00026327g0002.1 protein NbS00037546g0006.1 protein ; (*ITAG) Solyc02g078000.2.1 (e_value=3e-13) genomic_reference:SL2.40ch02 gene_region:37378561-37392436 transcript_region:SL2.40ch02:37378561..37392436- functional_description:"WD-40 repeat family protein (AHRD V1 *--- D7LF16_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00002251g0004.1 protein NbS00002539g0001.1 protein NbS00038036g0004.1 protein NbS00005707g0008.1 protein ; (*ITAG) Solyc01g009840.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:4339399-4340963 transcript_region:SL2.40ch01:4339399..4340963- functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 **-- A1YWS4_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00005707g0009.1 protein ; (*GB) gi|167857805|gb|ACA03877.1| (e_value=1e-43) chloroplast zebra-necrosis protein [Nicotiana benthamiana];; (*ITAG) Solyc08g005980.2.1 (e_value=6e-12) genomic_reference:SL2.40ch08 gene_region:749599-755094 transcript_region:SL2.40ch08:749599..755094+ go_terms:GO:0016021 functional_description:"AT4G35080-like protein (Fragment) (AHRD V1 *--- D6PRD4_9BRAS); contains Interpro domain(s) IPR011541 Nickel/cobalt transporter, high-affinity "; GO:0016021 NbS00018725g0003.1 protein NbS00018725g0005.1 protein NbS00005422g0003.1 protein NbS00015415g0004.1 protein NbS00036880g0011.1 protein ; (*GB) gi|309401691|gb|ADO79931.1| (e_value=5e-42) calcium-dependent protein kinase 8 [Nicotiana tabacum];; (*SWP) sp|Q42438|CDPK8_ARATH (e_value=3e-37) Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1;; (*TAIR) AT5G19450.2 (e_value=2e-38) | Symbols: CDPK19, CPK8 | calcium-dependent protein kinase 19 | chr5:6558672-6561471 REVERSE LENGTH=533;; (*ITAG) Solyc10g079130.1.1 (e_value=5e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60064941-60068542 transcript_region:SL2.40ch10:60064941..60068542- go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 4 (AHRD V1 ***- Q5EDD1_CAPAN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00036880g0009.1 protein ; (*ITAG) Solyc09g090880.1.1 (e_value=6e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:65647221-65647457 transcript_region:SL2.40ch09:65647221..65647457+ functional_description:"Unknown Protein (AHRD V1)"; NbS00047227g0003.1 protein ; (*GB) gi|255571022|ref|XP_002526462.1| (e_value=3e-14) lactoylglutathione lyase, putative [Ricinus communis];; (*TAIR) AT2G28420.1 (e_value=2e-14) | Symbols: | Lactoylglutathione lyase / glyoxalase I family protein | chr2:12157946-12158500 FORWARD LENGTH=184;; (*ITAG) Solyc01g103590.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:83929051-83930276 transcript_region:SL2.40ch01:83929051..83930276+ go_terms:GO:0004462 functional_description:"Glyoxalase/bleomycin resistance protein/dioxygenase (AHRD V1 **-- Q2HVV5_MEDTR); contains Interpro domain(s) IPR004360 Glyoxalase/bleomycin resistance protein/dioxygenase "; GO:0004462 NbS00015079g0003.1 protein NbS00015079g0004.1 protein NbS00020031g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-21) hypothetical protein [Nicotiana tabacum]; NbS00020031g0004.1 protein ; (*GB) gi|385234761|ref|YP_005796103.1| (e_value=1e-24) hypothetical protein [Ketogulonigenium vulgarum WSH-001]; NbS00025928g0002.1 protein NbS00000071g0003.1 protein NbS00019771g0003.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbC24727583g0002.1 protein ; (*GB) gi|255538832|ref|XP_002510481.1| (e_value=6e-70) tetratricopeptide repeat protein, tpr, putative [Ricinus communis];; (*SWP) sp|Q8S8L9|Y2245_ARATH (e_value=1e-68) Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1;; (*TAIR) AT2G32450.1 (e_value=8e-70) | Symbols: | Calcium-binding tetratricopeptide family protein | chr2:13778614-13781022 FORWARD LENGTH=802;; (*ITAG) Solyc04g081050.1.1 (e_value=2e-78) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00012719g0205.1 protein NbS00005563g0002.1 protein NbS00058647g0002.1 protein NbS00034995g0003.1 protein NbS00034995g0103.1 protein NbS00014337g0003.1 protein NbS00014337g0005.1 protein ; (*GB) gi|323435170|ref|YP_004222388.1| (e_value=4e-67) hypothetical protein BevumaM_p155 [Beta vulgaris subsp. maritima];; (*SWP) sp|P93286|CCMF_ARATH (e_value=6e-41) Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2;; (*ITAG) ATMG00180.1 (e_value=7e-42) | Symbols: CCB452 | cytochrome C biogenesis 452 | chrM:51293-53611 REVERSE LENGTH=452;; (*ITAG) Solyc11g039360.1.1 (e_value=3e-75) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:23164880-23166723 transcript_region:SL2.40ch11:23164880..23166723- functional_description:"Cytochrome c biogenesis FC (AHRD V1 ***- D5I3F3_CUCPE)"; NbS00020593g0004.1 protein NbS00020593g0005.1 protein NbS00039571g0003.1 protein NbS00039571g0004.1 protein NbS00039571g0005.1 protein NbS00039571g0007.1 protein NbS00027305g0005.1 protein NbS00035439g0003.1 protein NbS00014823g0101.1 protein NbS00046134g0001.1 protein ; (*GB) gi|356500543|ref|XP_003519091.1| (e_value=4e-26) PREDICTED: prolycopene isomerase, chloroplastic-like [Glycine max];; (*SWP) sp|Q52QW2|CRTS2_ONCHC (e_value=2e-27) Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO2 PE=2 SV=1;; (*TAIR) AT1G06820.1 (e_value=5e-26) | Symbols: CRTISO, CCR2 | carotenoid isomerase | chr1:2093145-2096220 REVERSE LENGTH=595;; (*ITAG) Solyc10g081650.1.1 (e_value=5e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:62006972-62011520 transcript_region:SL2.40ch10:62006972..62011520- go_terms:GO:0046608 functional_description:"Carotenoid isomerase, chloroplastic"; GO:0046608 NbS00055748g0002.1 protein NbS00055748g0003.1 protein NbS00005974g0003.1 protein NbS00005974g0006.1 protein NbS00043542g0006.1 protein NbS00061334g0002.1 protein NbS00061334g0003.1 protein NbS00056162g0004.1 protein NbS00029713g0103.1 protein NbS00029713g0108.1 protein NbS00044124g0004.1 protein NbS00044124g0007.1 protein ; (*GB) gi|388513439|gb|AFK44781.1| (e_value=3e-19) unknown [Lotus japonicus];; (*TAIR) AT2G01610.1 (e_value=1e-19) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr2:274124-274792 REVERSE LENGTH=222;; (*ITAG) Solyc10g076730.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59005566-59006198 transcript_region:SL2.40ch10:59005566..59006198+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- A9NW72_PICSI); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0030599 NbS00010219g0002.1 protein NbS00057660g0002.1 protein NbS00002695g0005.1 protein ; (*GB) gi|224054458|ref|XP_002298270.1| (e_value=4e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g068970.1.1 (e_value=3e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:50629856-50633071 transcript_region:SL2.40ch11:50629856..50633071+ functional_description:"Aluminum-activated malate transporter (Fragment) (AHRD V1 *--- Q07DP9_AEGSP); contains Interpro domain(s) IPR006214 Uncharacterised protein family UPF0005 "; NbS00002695g0007.1 protein ; (*GB) gi|164431178|gb|ABY55855.1| (e_value=2e-34) S-adenosylmethionine decarboxylase 2 [Solanum lycopersicum];; (*SWP) sp|Q96471|DCAM_IPONI (e_value=5e-29) S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1;; (*TAIR) AT5G15950.2 (e_value=5e-24) | Symbols: | Adenosylmethionine decarboxylase family protein | chr5:5206706-5207794 FORWARD LENGTH=362;; (*ITAG) Solyc02g089610.1.1 (e_value=6e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45946477-45947565 transcript_region:SL2.40ch02:45946477..45947565- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00021453g0004.1 protein NbS00017549g0006.1 protein ; (*GB) gi|4160292|emb|CAA77084.1| (e_value=4e-61) alpha-N-acetylglucosaminidase [Nicotiana tabacum];; (*TAIR) AT5G13690.1 (e_value=2e-41) | Symbols: CYL1, NAGLU | alpha-N-acetylglucosaminidase family / NAGLU family | chr5:4415808-4420159 FORWARD LENGTH=806;; (*ITAG) Solyc01g087610.2.1 (e_value=7e-64) genomic_reference:SL2.40ch01 gene_region:74319149-74336096 transcript_region:SL2.40ch01:74319149..74336096- go_terms:GO:0004561 functional_description:"Alpha-N-acetylglucosaminidase (AHRD V1 **** Q9ZR45_TOBAC); contains Interpro domain(s) IPR007781 Alpha-N-acetylglucosaminidase "; GO:0004561 NbS00010738g0008.1 protein NbS00003990g0006.1 protein NbS00004903g0007.1 protein NbS00004903g0009.1 protein NbS00004903g0010.1 protein NbS00018337g0006.1 protein NbS00042030g0001.1 protein NbC24004441g0002.1 protein ; (*GB) gi|224134486|ref|XP_002327417.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|P34369|PRP8_CAEEL (e_value=5e-20) Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1;; (*TAIR) AT1G80070.1 (e_value=1e-26) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=6e-28) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00024447g0003.1 protein NbS00025933g0009.1 protein NbS00002368g0001.1 protein NbS00014486g0006.1 protein ; (*GB) gi|4887020|gb|AAD32146.1|AF123508_1 (e_value=1e-40) Nt-iaa28 deduced protein [Nicotiana tabacum];; (*ITAG) Solyc01g097290.2.1 (e_value=2e-27) genomic_reference:SL2.40ch01 gene_region:79957345-79960205 transcript_region:SL2.40ch01:79957345..79960205+ go_terms:GO:0003700 functional_description:"Auxin responsive protein (AHRD V1 ***- D9IQE6_CATRO); contains Interpro domain(s) IPR003311 AUX/IAA protein "; GO:0003700 NbS00014486g0007.1 protein NbS00023012g0012.1 protein NbS00023012g0013.1 protein NbS00023012g0014.1 protein NbS00023012g0009.1 protein NbC24233615g0001.1 protein ; (*GB) gi|224089188|ref|XP_002308654.1| (e_value=5e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT5G25500.1 (e_value=5e-24) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:8881118-8882380 FORWARD LENGTH=420;; (*ITAG) Solyc08g061450.1.1 (e_value=1e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:45911440-45912699 transcript_region:SL2.40ch08:45911440..45912699+ functional_description:"Unknown Protein (AHRD V1)"; NbS00028235g0009.1 protein NbS00001025g0013.1 protein NbS00033414g0001.1 protein NbS00031922g0004.1 protein ; (*GB) gi|16417958|gb|AAL18931.1|AF429985_1 (e_value=6e-20) arabinosidase ARA-1 [Solanum lycopersicum];; (*SWP) sp|Q8VZR2|ASD2_ARATH (e_value=6e-18) Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1;; (*TAIR) AT5G26120.1 (e_value=5e-19) | Symbols: ATASD2, ASD2 | alpha-L-arabinofuranosidase 2 | chr5:9121835-9125399 REVERSE LENGTH=674;; (*ITAG) Solyc10g081120.1.1 (e_value=1e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:61584069-61591793 transcript_region:SL2.40ch10:61584069..61591793- go_terms:GO:0009044,GO:0046556 functional_description:"Alpha-L-arabinofuranosidase (AHRD V1 **** Q76LU4_SOLLC); contains Interpro domain(s) IPR017853 Glycoside hydrolase, catalytic core "; GO:0009044,GO:0046556 NbS00031922g0006.1 protein ; (*GB) gi|16417958|gb|AAL18931.1|AF429985_1 (e_value=4e-64) arabinosidase ARA-1 [Solanum lycopersicum];; (*SWP) sp|Q9SG80|ASD1_ARATH (e_value=3e-45) Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1;; (*TAIR) AT3G10740.1 (e_value=2e-46) | Symbols: ASD1, ARAF1, ARAF, ATASD1 | alpha-L-arabinofuranosidase 1 | chr3:3361031-3364573 REVERSE LENGTH=678;; (*ITAG) Solyc10g077080.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:59305819-59311151 transcript_region:SL2.40ch10:59305819..59311151+ go_terms:GO:0016798,GO:0046373 functional_description:"Alpha-L-arabinofuranosidase (AHRD V1 ***- Q76LU4_SOLLC); contains Interpro domain(s) IPR017853 Glycoside hydrolase, catalytic core "; GO:0016798,GO:0046373 NbS00037137g0006.1 protein NbS00011894g0004.1 protein NbS00012660g0011.1 protein NbS00012660g0005.1 protein NbS00012660g0008.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-25) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00024708g0002.1 protein NbS00024708g0003.1 protein NbS00018926g0001.1 protein NbS00021759g0004.1 protein NbS00001107g0011.1 protein NbS00008937g0001.1 protein NbS00008937g0102.1 protein NbS00006666g0001.1 protein NbS00010021g0004.1 protein NbS00010021g0008.1 protein NbS00010021g0010.1 protein NbS00045678g0002.1 protein NbS00000758g0013.1 protein NbS00000758g0010.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=3e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00026912g0001.1 protein NbS00039743g0001.1 protein NbS00007145g0005.1 protein NbS00007145g0007.1 protein NbS00008944g0005.1 protein NbS00008944g0007.1 protein NbS00008944g0110.1 protein NbS00000523g0009.1 protein NbS00003236g0015.1 protein NbS00003236g0008.1 protein NbS00003236g0010.1 protein NbS00020602g0005.1 protein NbS00007448g0005.1 protein ; (*ITAG) Solyc01g020520.2.1 (e_value=4e-32) genomic_reference:SL2.40ch01 gene_region:31165431-31173049 transcript_region:SL2.40ch01:31165431..31173049+ go_terms:GO:0006508 functional_description:"Membrane-bound transcription factor protease site 2 (AHRD V1 ***- Q4V9P5_DANRE); contains Interpro domain(s) IPR008915 Peptidase M50 "; GO:0006508 NbS00034354g0002.1 protein NbS00024317g0002.1 protein NbS00024317g0003.1 protein NbS00011914g0001.1 protein NbS00027767g0003.1 protein NbS00009769g0008.1 protein NbS00009769g0009.1 protein NbS00002192g0005.1 protein NbS00038724g0011.1 protein NbS00038724g0008.1 protein NbS00009355g0018.1 protein NbS00050626g0002.1 protein NbS00004684g0005.1 protein NbS00027723g0003.1 protein NbS00024547g0002.1 protein NbS00007926g0011.1 protein NbS00007926g0010.1 protein ; (*GB) gi|350536239|ref|NP_001234492.1| (e_value=3e-89) nuclear matrix protein 1 [Solanum lycopersicum];; (*TAIR) AT5G17620.1 (e_value=3e-77) | Symbols: | CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5805934-5808455 REVERSE LENGTH=329;; (*ITAG) Solyc01g081380.2.1 (e_value=6e-92) genomic_reference:SL2.40ch01 gene_region:73103761-73110188 transcript_region:SL2.40ch01:73103761..73110188- functional_description:"Nuclear matrix protein 1 (AHRD V1 ***- Q93XE2_SOLLC); contains Interpro domain(s) IPR010604 Plant nuclear matrix 1 "; NbS00020060g0002.1 protein NbS00008268g0006.1 protein NbS00010088g0008.1 protein NbS00012373g0002.1 protein NbS00012373g0003.1 protein NbS00039756g0004.1 protein NbS00002509g0002.1 protein NbS00046837g0002.1 protein ; (*GB) gi|224109192|ref|XP_002315117.1| (e_value=5e-47) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84RR0|ARI7_ARATH (e_value=7e-42) Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1;; (*TAIR) AT2G31510.1 (e_value=5e-43) | Symbols: ARI7, ATARI7 | IBR domain-containing protein | chr2:13416991-13421170 REVERSE LENGTH=562;; (*ITAG) Solyc11g008580.1.1 (e_value=1e-80) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2764823-2775320 transcript_region:SL2.40ch11:2764823..2775320- go_terms:GO:0008270,GO:0005622 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270,GO:0005622 NbS00026325g0001.1 protein NbS00043577g0001.1 protein NbS00018734g0001.1 protein NbS00029226g0002.1 protein ; (*GB) gi|359477496|ref|XP_003631985.1| (e_value=2e-46) PREDICTED: uncharacterized protein LOC100854837 [Vitis vinifera];; (*TAIR) AT3G17330.2 (e_value=1e-15) | Symbols: ECT6 | evolutionarily conserved C-terminal region 6 | chr3:5917253-5919068 REVERSE LENGTH=493;; (*ITAG) Solyc12g099090.1.1 (e_value=4e-69) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64706410-64710192 transcript_region:SL2.40ch12:64706410..64710192+ functional_description:"YTH domain family 2 (Predicted) (AHRD V1 *--- B2GUU1_RAT); contains Interpro domain(s) IPR007275 YT521-B-like protein "; NbS00029226g0003.1 protein NbS00006412g0005.1 protein NbS00006412g0007.1 protein NbS00006412g0008.1 protein ; (*GB) gi|147864010|emb|CAN78961.1| (e_value=2e-46) hypothetical protein VITISV_008155 [Vitis vinifera];; (*SWP) sp|Q9FZ45|Y1686_ARATH (e_value=6e-20) Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1;; (*TAIR) AT4G22290.1 (e_value=8e-28) | Symbols: | Ubiquitin-specific protease family C19-related protein | chr4:11783199-11785730 REVERSE LENGTH=445;; (*ITAG) Solyc01g096300.2.1 (e_value=4e-68) genomic_reference:SL2.40ch01 gene_region:79143339-79147617 transcript_region:SL2.40ch01:79143339..79147617- functional_description:"Cysteine-type endopeptidase/ ubiquitin thiolesterase (AHRD V1 **-- B6TDL6_MAIZE)"; NbC25108153g0001.1 protein ; (*GB) gi|255567576|ref|XP_002524767.1| (e_value=1e-34) Gibberellin receptor GID1, putative [Ricinus communis];; (*SWP) sp|Q9LYC1|GID1B_ARATH (e_value=7e-25) Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1;; (*TAIR) AT3G63010.1 (e_value=5e-26) | Symbols: ATGID1B, GID1B | alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358;; (*ITAG) Solyc06g008870.2.1 (e_value=2e-45) genomic_reference:SL2.40ch06 gene_region:2812790-2815929 transcript_region:SL2.40ch06:2812790..2815929+ go_terms:GO:0005515 functional_description:"GID1-like gibberellin receptor (AHRD V1 **-- A7MAQ4_HORVU); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0005515 NbS00013758g0002.1 protein NbS00002366g0004.1 protein NbS00013940g0005.1 protein NbS00013940g0008.1 protein ; (*ITAG) Solyc02g082580.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:40819075-40820501 transcript_region:SL2.40ch02:40819075..40820501- functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00024116g0011.1 protein NbS00060083g0002.1 protein NbS00012924g0005.1 protein NbS00012924g0007.1 protein NbS00015249g0014.1 protein NbS00023769g0001.1 protein ; (*GB) gi|255556632|ref|XP_002519350.1| (e_value=1e-33) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8RXW0|Y3761_ARATH (e_value=8e-30) Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1;; (*TAIR) AT3G17611.2 (e_value=5e-32) | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 | chr3:6025454-6026173 FORWARD LENGTH=239;; (*ITAG) Solyc07g042930.2.1 (e_value=3e-38) genomic_reference:SL2.40ch07 gene_region:53809257-53811891 transcript_region:SL2.40ch07:53809257..53811891+ go_terms:GO:0016021,GO:0005622 functional_description:"Rhomboid domain-containing protein 1 (AHRD V1 *-*- B5X3K7_SALSA); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021,GO:0005622 NbS00009087g0003.1 protein NbS00009087g0004.1 protein NbS00027710g0007.1 protein NbS00001529g0005.1 protein NbS00001529g0007.1 protein NbS00043483g0002.1 protein NbS00028811g0002.1 protein NbS00047452g0005.1 protein NbS00013079g0003.1 protein NbS00013079g0004.1 protein NbS00005615g0006.1 protein ; (*GB) gi|147840611|emb|CAN63855.1| (e_value=3e-32) hypothetical protein VITISV_008852 [Vitis vinifera];; (*SWP) sp|Q8LBI9|EDL16_ARATH (e_value=7e-26) Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2;; (*TAIR) AT5G18840.1 (e_value=5e-27) | Symbols: | Major facilitator superfamily protein | chr5:6282954-6286399 FORWARD LENGTH=482;; (*ITAG) Solyc01g080680.2.1 (e_value=5e-43) genomic_reference:SL2.40ch01 gene_region:72437121-72440809 transcript_region:SL2.40ch01:72437121..72440809+ go_terms:GO:0016020,GO:0016021 functional_description:"Glucose transporter 8 (AHRD V1 ***- Q2KKJ3_SOLIN); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0016020,GO:0016021 NbS00024542g0003.1 protein NbS00016044g0016.1 protein NbS00037218g0001.1 protein NbS00023821g0005.1 protein ; (*ITAG) Solyc10g055770.1.1 (e_value=3e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:52874937-52878941 transcript_region:SL2.40ch10:52874937..52878941+ go_terms:GO:0055085,GO:0016021 functional_description:"Multidrug resistance protein 2 (AHRD V1 **-- C2V7S0_BACCE); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085,GO:0016021 NbS00047303g0006.1 protein NbS00015191g0004.1 protein NbS00054549g0003.1 protein NbS00008133g0109.1 protein NbS00014788g0002.1 protein NbS00010984g0009.1 protein NbS00018819g0004.1 protein NbS00018819g0105.1 protein NbS00029150g0009.1 protein NbS00033068g0004.1 protein NbS00033068g0006.1 protein NbS00005325g0003.1 protein NbS00005325g0005.1 protein NbC23752341g0002.1 protein ; (*GB) gi|356512215|ref|XP_003524816.1| (e_value=3e-21) PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max];; (*SWP) sp|Q8H0T4|UPL2_ARATH (e_value=1e-16) E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1 SV=3;; (*TAIR) AT1G70320.1 (e_value=1e-17) | Symbols: UPL2 | ubiquitin-protein ligase 2 | chr1:26488745-26501281 REVERSE LENGTH=3658;; (*ITAG) Solyc07g065630.2.1 (e_value=4e-25) genomic_reference:SL2.40ch07 gene_region:64541438-64557682 transcript_region:SL2.40ch07:64541438..64557682+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 **** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00020145g0005.1 protein ; (*GB) gi|356514216|ref|XP_003525802.1| (e_value=5e-19) PREDICTED: monocopper oxidase-like protein SKU5-like [Glycine max];; (*SWP) sp|Q9SU40|SKU5_ARATH (e_value=5e-20) Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1;; (*TAIR) AT4G12420.2 (e_value=4e-21) | Symbols: SKU5 | Cupredoxin superfamily protein | chr4:7349941-7352868 REVERSE LENGTH=587;; (*ITAG) Solyc08g079090.2.1 (e_value=1e-26) genomic_reference:SL2.40ch08 gene_region:59901779-59905784 transcript_region:SL2.40ch08:59901779..59905784+ go_terms:GO:0055114 functional_description:"Laccase-22 (AHRD V1 **-- LAC22_ORYSJ); contains Interpro domain(s) IPR001117 Multicopper oxidase, type 1 "; GO:0055114 NbS00020145g0006.1 protein NbS00033343g0004.1 protein NbS00044183g0001.1 protein NbS00022306g0003.1 protein ; (*GB) gi|225450677|ref|XP_002283157.1| (e_value=3e-53) PREDICTED: topless-related protein 3 [Vitis vinifera];; (*SWP) sp|Q9LRZ0|TPR2_ARATH (e_value=8e-51) Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2;; (*TAIR) AT3G16830.1 (e_value=6e-52) | Symbols: TPR2 | TOPLESS-related 2 | chr3:5731709-5737531 FORWARD LENGTH=1131;; (*ITAG) Solyc01g100050.2.1 (e_value=2e-61) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00022306g0005.1 protein NbS00010056g0004.1 protein NbS00010056g0007.1 protein NbS00030989g0009.1 protein ; (*ITAG) Solyc04g072630.2.1 (e_value=8e-14) genomic_reference:SL2.40ch04 gene_region:57188492-57198522 transcript_region:SL2.40ch04:57188492..57198522+ functional_description:"Os10g0363700 protein (Fragment) (AHRD V1 *-*- Q0IY59_ORYSJ)"; NbS00020351g0013.1 protein NbS00020351g0015.1 protein NbS00025514g0004.1 protein NbS00009304g0007.1 protein ; (*GB) gi|356532986|ref|XP_003535050.1| (e_value=6e-66) PREDICTED: tubulin-specific chaperone E-like [Glycine max];; (*SWP) sp|Q8CIV8|TBCE_MOUSE (e_value=2e-25) Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1;; (*TAIR) AT1G71440.1 (e_value=2e-64) | Symbols: PFI, TFC E | tubulin folding cofactor E / Pfifferling (PFI) | chr1:26921271-26924373 REVERSE LENGTH=531;; (*ITAG) Solyc11g042470.1.1 (e_value=2e-94) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:32151789-32164530 transcript_region:SL2.40ch11:32151789..32164530+ functional_description:"Tubulin-specific chaperone E (AHRD V1 ***- C0S593_PARBP); contains Interpro domain(s) IPR000938 Cytoskeleton-associated protein, CAP-Gly "; NbS00039861g0002.1 protein NbS00009813g0105.1 protein NbS00009813g0106.1 protein NbS00009813g0201.1 protein NbS00059405g0001.1 protein ; (*GB) gi|147780465|emb|CAN62546.1| (e_value=3e-13) hypothetical protein VITISV_000758 [Vitis vinifera];; (*ITAG) Solyc07g041290.1.1 (e_value=3e-28) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch07 gene_region:49523053-49523982 transcript_region:SL2.40ch07:49523053..49523982+ go_terms:GO:0042802 functional_description:"Unknown Protein (AHRD V1)"; GO:0042802 NbS00025987g0001.1 protein NbS00008577g0003.1 protein NbS00022130g0006.1 protein NbS00022130g0008.1 protein NbS00022130g0009.1 protein NbS00059802g0003.1 protein NbS00022316g0003.1 protein NbS00030751g0002.1 protein NbS00004425g0002.1 protein NbS00058380g0002.1 protein NbS00041620g0002.1 protein NbS00003041g0006.1 protein NbS00053587g0005.1 protein ; (*GB) gi|255578237|ref|XP_002529986.1| (e_value=6e-17) nuclear matrix protein, putative [Ricinus communis];; (*TAIR) AT5G09860.2 (e_value=9e-19) | Symbols: THO1 | nuclear matrix protein-related | chr5:3066815-3070733 FORWARD LENGTH=598;; (*ITAG) Solyc01g096600.2.1 (e_value=1e-19) genomic_reference:SL2.40ch01 gene_region:79421544-79440342 transcript_region:SL2.40ch01:79421544..79440342- go_terms:GO:0003711,GO:0005515 functional_description:"THO complex subunit 1 (AHRD V1 **-- B0WA57_CULQU)"; GO:0003711,GO:0005515 NbS00016635g0005.1 protein NbS00016635g0006.1 protein NbS00020235g0003.1 protein NbS00034203g0001.1 protein ; (*GB) gi|356577518|ref|XP_003556871.1| (e_value=9e-16) PREDICTED: uncharacterized protein LOC100818785 [Glycine max];; (*ITAG) Solyc11g006390.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1091517-1101108 transcript_region:SL2.40ch11:1091517..1101108+ functional_description:"Unknown Protein (AHRD V1)"; NbS00040522g0003.1 protein ; (*GB) gi|296087061|emb|CBI33435.3| (e_value=6e-43) unnamed protein product [Vitis vinifera]; NbS00006885g0107.1 protein NbS00006885g0108.1 protein NbS00018981g0008.1 protein ; (*ITAG) Solyc12g009400.1.1 (e_value=6e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2682210-2685916 transcript_region:SL2.40ch12:2682210..2685916+ go_terms:GO:0031072 functional_description:"Pyruvate dehydrogenase E1 component alpha subunit (AHRD V1 ***- Q5N030_SYNP6); contains Interpro domain(s) IPR017597 Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y "; GO:0031072 NbS00018981g0009.1 protein NbS00000723g0002.1 protein NbS00002297g0010.1 protein NbS00053964g0003.1 protein NbS00014234g0005.1 protein NbS00002633g0004.1 protein ; (*GB) gi|388519043|gb|AFK47583.1| (e_value=3e-29) unknown [Lotus japonicus]; NbS00005160g0002.1 protein NbS00005160g0003.1 protein NbS00023496g0003.1 protein ; (*ITAG) Solyc02g091150.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:47134161-47134589 transcript_region:SL2.40ch02:47134161..47134589- functional_description:"Unknown Protein (AHRD V1)"; NbS00050778g0001.1 protein ; (*GB) gi|296087061|emb|CBI33435.3| (e_value=3e-42) unnamed protein product [Vitis vinifera]; NbS00011469g0008.1 protein NbS00005069g0004.1 protein NbS00025169g0011.1 protein NbS00025169g0006.1 protein NbS00003811g0002.1 protein NbS00024897g0002.1 protein NbS00013228g0009.1 protein NbS00000926g0012.1 protein NbS00000926g0015.1 protein NbS00000926g0006.1 protein NbS00004760g0003.1 protein NbS00004760g0004.1 protein NbS00004760g0005.1 protein NbC23763655g0001.1 protein ; (*GB) gi|225454641|ref|XP_002267090.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100249418 [Vitis vinifera];; (*TAIR) AT5G17510.1 (e_value=2e-24) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5770518-5772343 REVERSE LENGTH=369;; (*ITAG) Solyc03g097300.2.1 (e_value=3e-28) genomic_reference:SL2.40ch03 gene_region:53074422-53079125 transcript_region:SL2.40ch03:53074422..53079125- functional_description:"Glutamine-rich protein (AHRD V1 ***- Q9LF51_ARATH)"; NbS00012662g0002.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=1e-12) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc01g094420.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00012662g0006.1 protein NbS00034083g0004.1 protein NbS00034083g0105.1 protein NbS00034083g0106.1 protein NbS00036752g0005.1 protein ; (*GB) gi|302142028|emb|CBI19231.3| (e_value=7e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SE96|GEML1_ARATH (e_value=2e-21) GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1;; (*TAIR) AT1G28200.1 (e_value=1e-22) | Symbols: FIP1 | FH interacting protein 1 | chr1:9850395-9852300 REVERSE LENGTH=259;; (*ITAG) Solyc07g021540.2.1 (e_value=5e-26) genomic_reference:SL2.40ch07 gene_region:19310213-19316385 transcript_region:SL2.40ch07:19310213..19316385- functional_description:"FIP1 (AHRD V1 **-- B6TPG9_MAIZE); contains Interpro domain(s) IPR004182 GRAM "; NbS00038351g0003.1 protein ; (*ITAG) Solyc02g062450.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:28623171-28623580 transcript_region:SL2.40ch02:28623171..28623580- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00002507g0009.1 protein NbS00022054g0004.1 protein ; (*GB) gi|147769722|emb|CAN69702.1| (e_value=1e-31) hypothetical protein VITISV_020318 [Vitis vinifera]; NbS00022054g0008.1 protein NbS00023514g0002.1 protein NbS00047628g0006.1 protein NbS00014347g0004.1 protein NbS00014347g0007.1 protein ; (*GB) gi|225444185|ref|XP_002269497.1| (e_value=3e-45) PREDICTED: non-specific lipid-transfer protein C, cotyledon-specific isoform-like [Vitis vinifera];; (*SWP) sp|P10975|NLTPC_RICCO (e_value=2e-42) Non-specific lipid-transfer protein C, cotyledon-specific isoform OS=Ricinus communis PE=1 SV=2;; (*TAIR) AT3G51590.1 (e_value=6e-15) | Symbols: LTP12 | lipid transfer protein 12 | chr3:19135828-19136654 REVERSE LENGTH=119;; (*ITAG) Solyc01g090360.2.1 (e_value=9e-15) genomic_reference:SL2.40ch01 gene_region:75821027-75821828 transcript_region:SL2.40ch01:75821027..75821828- go_terms:GO:0006869 functional_description:"Non-specific lipid-transfer protein (AHRD V1 ***- B9RD07_RICCO); contains Interpro domain(s) IPR013770 Plant lipid transfer protein and hydrophobic protein, helical "; GO:0006869 NbS00014347g0008.1 protein NbS00027412g0001.1 protein NbS00051756g0003.1 protein NbS00033224g0005.1 protein NbS00029985g0017.1 protein NbS00029985g0010.1 protein NbS00045823g0013.1 protein NbS00021043g0009.1 protein ; (*ITAG) Solyc08g069010.2.1 (e_value=8e-19) genomic_reference:SL2.40ch08 gene_region:55300249-55313870 transcript_region:SL2.40ch08:55300249..55313870+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M2Z4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00045515g0004.1 protein NbS00002169g0011.1 protein NbS00002169g0013.1 protein NbS00002169g0009.1 protein NbS00002686g0107.1 protein NbS00016974g0004.1 protein NbS00021317g0008.1 protein NbC23986537g0001.1 protein ; (*GB) gi|356525780|ref|XP_003531501.1| (e_value=7e-32) PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Glycine max];; (*SWP) sp|P32481|IF2G_YEAST (e_value=1e-19) Eukaryotic translation initiation factor 2 subunit gamma OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD11 PE=1 SV=1;; (*TAIR) AT1G04170.1 (e_value=2e-29) | Symbols: EIF2 GAMMA | eukaryotic translation initiation factor 2 gamma subunit | chr1:1097423-1099702 FORWARD LENGTH=465;; (*ITAG) Solyc12g099470.1.1 (e_value=2e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64950773-64954935 transcript_region:SL2.40ch12:64950773..64954935- go_terms:GO:0005525 functional_description:"Translation initiation factor 2 gamma subunit (AHRD V1 ***- Q684L1_9INSE); contains Interpro domain(s) IPR015256 Initiation factor eIF2 gamma, C-terminal "; GO:0005525 NbS00029780g0012.1 protein NbS00029780g0013.1 protein NbS00029780g0008.1 protein NbS00029780g0010.1 protein NbS00037699g0013.1 protein NbS00037699g0007.1 protein NbS00017836g0009.1 protein NbS00032377g0003.1 protein NbS00002843g0003.1 protein NbS00002843g0004.1 protein NbS00019318g0002.1 protein ; (*GB) gi|356572190|ref|XP_003554253.1| (e_value=2e-16) PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Glycine max];; (*TAIR) AT3G63200.1 (e_value=1e-14) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=9e-21) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00025388g0010.1 protein NbS00042602g0002.1 protein NbS00020690g0004.1 protein NbS00020690g0006.1 protein NbS00020690g0007.1 protein NbS00020690g0009.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=4e-22) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=6e-17) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbS00021830g0003.1 protein NbS00021615g0008.1 protein ; (*ITAG) Solyc05g014130.2.1 (e_value=2e-24) genomic_reference:SL2.40ch05 gene_region:7825077-7831106 transcript_region:SL2.40ch05:7825077..7831106- functional_description:"COP1-interacting protein 4 (AHRD V1 *--- Q9C5U5_ARATH)"; NbS00018807g0002.1 protein NbS00013108g0013.1 protein NbS00013108g0015.1 protein NbC24292479g0001.1 protein ; (*GB) gi|255569956|ref|XP_002525941.1| (e_value=8e-45) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q9SRU2|BIG_ARATH (e_value=6e-46) Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=2 SV=2;; (*TAIR) AT3G02260.1 (e_value=5e-47) | Symbols: BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 | auxin transport protein (BIG) | chr3:431152-448489 REVERSE LENGTH=5098;; (*ITAG) Solyc02g089260.2.1 (e_value=1e-50) genomic_reference:SL2.40ch02 gene_region:45704210-45726943 transcript_region:SL2.40ch02:45704210..45726943+ go_terms:GO:0005488,GO:0008270,GO:0005622 functional_description:"E3 ubiquitin-protein ligase UBR4 (AHRD V1 *--- UBR4_HUMAN); contains Interpro domain(s) IPR013993 Zinc finger, N-recognin, metazoa "; GO:0005488,GO:0008270,GO:0005622 NbS00006792g0109.1 protein NbS00034940g0006.1 protein NbS00014202g0004.1 protein NbS00045412g0001.1 protein NbS00020846g0002.1 protein ; (*ITAG) Solyc01g096760.2.1 (e_value=1e-15) genomic_reference:SL2.40ch01 gene_region:79542130-79546287 transcript_region:SL2.40ch01:79542130..79546287- functional_description:"Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region "; NbS00008800g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-19) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00008800g0005.1 protein ; (*SWP) sp|Q9LHP1|RL74_ARATH (e_value=2e-13) 60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1;; (*TAIR) AT3G13580.1 (e_value=1e-14) | Symbols: | Ribosomal protein L30/L7 family protein | chr3:4433809-4435109 FORWARD LENGTH=244;; (*ITAG) Solyc08g075090.2.1 (e_value=2e-14) genomic_reference:SL2.40ch08 gene_region:56410976-56415969 transcript_region:SL2.40ch08:56410976..56415969- go_terms:GO:0005840,GO:0015934,GO:0005634,GO:0045449 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7MY49_ARALY); contains Interpro domain(s) IPR005998 Ribosomal protein L7, eukaryotic "; GO:0005840,GO:0015934,GO:0005634,GO:0045449 NbS00033960g0006.1 protein NbS00041696g0007.1 protein ; (*GB) gi|439491|dbj|BAA05078.1| (e_value=1e-19) zinc-finger DNA binding protein [Petunia x hybrida];; (*TAIR) AT3G19580.2 (e_value=7e-16) | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3:6803293-6804114 REVERSE LENGTH=273;; (*ITAG) Solyc01g107170.2.1 (e_value=2e-19) genomic_reference:SL2.40ch01 gene_region:86548794-86550092 transcript_region:SL2.40ch01:86548794..86550092+ go_terms:GO:0003700,GO:0016564 functional_description:"Zinc finger protein (AHRD V1 ***- A0T3Q5_SOLTU); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700,GO:0016564 NbS00048202g0002.1 protein ; (*SWP) sp|P40229|CSK2C_ARATH (e_value=3e-13) Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1;; (*TAIR) AT4G17640.1 (e_value=3e-14) | Symbols: CKB2 | casein kinase II beta chain 2 | chr4:9825438-9826988 FORWARD LENGTH=282;; (*ITAG) Solyc01g088740.2.1 (e_value=8e-15) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00048202g0003.1 protein ; (*GB) gi|356497080|ref|XP_003517392.1| (e_value=5e-26) PREDICTED: casein kinase II subunit beta'-like isoform 1 [Glycine max];; (*SWP) sp|P40229|CSK2C_ARATH (e_value=9e-25) Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1;; (*TAIR) AT4G17640.1 (e_value=7e-26) | Symbols: CKB2 | casein kinase II beta chain 2 | chr4:9825438-9826988 FORWARD LENGTH=282;; (*ITAG) Solyc01g088740.2.1 (e_value=9e-28) genomic_reference:SL2.40ch01 gene_region:75266463-75271460 transcript_region:SL2.40ch01:75266463..75271460- go_terms:GO:0004674,GO:0019887 functional_description:"Casein kinase II subunit beta-4 (AHRD V1 **** B6TGH2_MAIZE); contains Interpro domain(s) IPR000704 Casein kinase II, regulatory subunit "; GO:0004674,GO:0019887 NbS00010281g0006.1 protein ; (*GB) gi|224086568|ref|XP_002307910.1| (e_value=3e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc05g009850.2.1 (e_value=9e-21) genomic_reference:SL2.40ch05 gene_region:4065885-4072574 transcript_region:SL2.40ch05:4065885..4072574+ go_terms:GO:0030371 functional_description:"Gc-rich sequence DNA-binding factor (AHRD V1 *-*- Q177S5_AEDAE); contains Interpro domain(s) IPR012890 GC-rich sequence DNA-binding factor-like "; GO:0030371 NbS00023118g0003.1 protein NbS00023118g0004.1 protein NbS00036570g0002.1 protein ; (*GB) gi|359493041|ref|XP_002267014.2| (e_value=4e-31) PREDICTED: uncharacterized protein LOC100242745 [Vitis vinifera];; (*SWP) sp|Q54XP6|IF2P_DICDI (e_value=2e-18) Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1;; (*TAIR) AT1G76720.1 (e_value=6e-33) | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28794144-28798780 REVERSE LENGTH=1191;; (*ITAG) Solyc06g054400.2.1 (e_value=3e-35) genomic_reference:SL2.40ch06 gene_region:33670542-33677416 transcript_region:SL2.40ch06:33670542..33677416+ go_terms:GO:0005525 functional_description:"Translation initiation factor (AHRD V1 ***- Q8H6S8_PEA); contains Interpro domain(s) IPR015760 Translation initiation factor 2 related "; GO:0005525 NbC25860269g0002.1 protein ; (*GB) gi|357440917|ref|XP_003590736.1| (e_value=9e-15) hypothetical protein MTR_1g073220 [Medicago truncatula];; (*TAIR) AT3G42140.1 (e_value=1e-12) | Symbols: | zinc ion binding;nucleic acid binding | chr3:14302060-14303018 REVERSE LENGTH=273; NbS00020064g0006.1 protein NbS00011460g0005.1 protein NbS00011871g0005.1 protein ; (*GB) gi|224083819|ref|XP_002307135.1| (e_value=1e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9XIK4|U202A_ARATH (e_value=1e-30) UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2;; (*TAIR) AT1G10490.1 (e_value=8e-32) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=2e-34) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00017221g0008.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-33) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=2e-19) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00017221g0010.1 protein NbS00011795g0004.1 protein NbS00031751g0005.1 protein NbS00007819g0007.1 protein NbS00039128g0001.1 protein NbS00037512g0004.1 protein ; (*TAIR) AT1G05660.1 (e_value=4e-12) | Symbols: | Pectin lyase-like superfamily protein | chr1:1694286-1696058 REVERSE LENGTH=394;; (*ITAG) Solyc12g009420.1.1 (e_value=4e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:2697739-2702193 transcript_region:SL2.40ch12:2697739..2702193- go_terms:GO:0004650 functional_description:"Polygalacturonase (AHRD V1 **** O81246_CUCME); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0004650 NbS00005284g0008.1 protein NbS00011792g0203.1 protein NbS00011792g0205.1 protein NbS00011838g0004.1 protein NbS00011838g0005.1 protein NbS00011838g0007.1 protein NbS00011490g0005.1 protein ; (*ITAG) Solyc06g073160.2.1 (e_value=1e-16) genomic_reference:SL2.40ch06 gene_region:41461216-41466739 transcript_region:SL2.40ch06:41461216..41466739- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 *-*- Q9FM45_ARATH)"; NbS00037818g0003.1 protein NbS00050856g0005.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=7e-33) PREDICTED: uncharacterized protein LOC100795315 [Glycine max];; (*SWP) sp|Q6NKW9|E138_ARATH (e_value=3e-13) Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2;; (*TAIR) AT3G24330.1 (e_value=1e-18) | Symbols: | O-Glycosyl hydrolases family 17 protein | chr3:8830336-8831838 FORWARD LENGTH=500;; (*ITAG) Solyc05g006210.2.1 (e_value=3e-37) genomic_reference:SL2.40ch05 gene_region:876367-878630 transcript_region:SL2.40ch05:876367..878630+ go_terms:GO:0005975 functional_description:"Glucan endo-1 3-beta-glucosidase 6 (AHRD V1 ***- B6TW83_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005975 NbS00005859g0004.1 protein NbS00005859g0006.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=9e-14) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00005859g0007.1 protein NbS00005859g0008.1 protein NbS00000931g0002.1 protein ; (*GB) gi|224088208|ref|XP_002308371.1| (e_value=4e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G06800.1 (e_value=7e-14) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105680 FORWARD LENGTH=375;; (*ITAG) Solyc10g078720.1.1 (e_value=1e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59772765-59775551 transcript_region:SL2.40ch10:59772765..59775551- go_terms:GO:0045449 functional_description:"MYB-CC type transfactor (AHRD V1 *--- C0JA36_ORYPU); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00017920g0009.1 protein ; (*GB) gi|356544212|ref|XP_003540548.1| (e_value=4e-18) PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Glycine max];; (*SWP) sp|Q3E875|RGAP1_ARATH (e_value=2e-15) Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2;; (*TAIR) AT5G61530.2 (e_value=2e-16) | Symbols: | small G protein family protein / RhoGAP family protein | chr5:24742630-24744586 FORWARD LENGTH=367;; (*ITAG) Solyc03g093430.2.1 (e_value=3e-25) genomic_reference:SL2.40ch03 gene_region:48160685-48165589 transcript_region:SL2.40ch03:48160685..48165589+ go_terms:GO:0005100 functional_description:"Rho GTPase activating protein 1 (AHRD V1 *-** Q568D8_DANRE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0005100 NbS00054857g0002.1 protein ; (*GB) gi|350538741|ref|NP_001234613.1| (e_value=3e-49) beta-hexosaminidase 2 [Solanum lycopersicum];; (*SWP) sp|Q54K56|HEXB2_DICDI (e_value=4e-19) Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1;; (*TAIR) AT3G55260.1 (e_value=2e-36) | Symbols: HEXO1, ATHEX2 | beta-hexosaminidase 1 | chr3:20489317-20492858 FORWARD LENGTH=541;; (*ITAG) Solyc05g054710.2.1 (e_value=8e-52) genomic_reference:SL2.40ch05 gene_region:63711436-63721172 transcript_region:SL2.40ch05:63711436..63721172- go_terms:GO:0016231 functional_description:"Beta-hexosaminidase b (AHRD V1 **** Q17BL1_AEDAE); contains Interpro domain(s) IPR001540 Glycoside hydrolase, family 20 "; GO:0016231 NbS00036907g0002.1 protein NbS00036907g0004.1 protein NbS00047882g0002.1 protein NbS00051317g0002.1 protein NbS00037537g0001.1 protein NbS00006592g0005.1 protein NbS00006592g0009.1 protein NbS00006592g0010.1 protein NbC25222459g0001.1 protein ; (*GB) gi|255549002|ref|XP_002515557.1| (e_value=2e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11420.1 (e_value=5e-64) | Symbols: | Protein of unknown function, DUF642 | chr5:3644655-3646991 FORWARD LENGTH=366;; (*ITAG) Solyc08g067030.2.1 (e_value=9e-78) genomic_reference:SL2.40ch08 gene_region:53144093-53148914 transcript_region:SL2.40ch08:53144093..53148914+ functional_description:"Os01g0611000 protein (Fragment) (AHRD V1 ***- Q0JLB5_ORYSJ); contains Interpro domain(s) IPR006946 Protein of unknown function DUF642 "; NbS00020811g0101.1 protein NbS00048917g0002.1 protein ; (*GB) gi|116047943|gb|ABJ53197.1| (e_value=2e-40) myosin XI-2 [Nicotiana benthamiana];; (*TAIR) AT1G04160.1 (e_value=5e-39) | Symbols: XIB, ATXIB, XI-8, XI-B | myosin XI B | chr1:1086495-1096146 FORWARD LENGTH=1500;; (*ITAG) Solyc06g008090.2.1 (e_value=5e-43) genomic_reference:SL2.40ch06 gene_region:1959559-1982019 transcript_region:SL2.40ch06:1959559..1982019- go_terms:GO:0060001 functional_description:"Myosin XI-2 (AHRD V1 ***- B0CN59_NICBE); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0060001 NbS00019068g0106.1 protein NbS00019068g0107.1 protein NbS00037191g0003.1 protein ; (*ITAG) Solyc04g051510.1.1 (e_value=3e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:49870634-49874257 transcript_region:SL2.40ch04:49870634..49874257+ go_terms:GO:0042803 functional_description:"Receptor like kinase, RLK"; GO:0042803 NbC23737139g0001.1 protein ; (*GB) gi|26984133|gb|AAN85207.1| (e_value=3e-36) DNA topoisomerase II [Nicotiana tabacum];; (*SWP) sp|P30182|TOP2_ARATH (e_value=1e-25) DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2;; (*TAIR) AT3G23890.2 (e_value=7e-27) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1438;; (*ITAG) Solyc01g087500.2.1 (e_value=3e-39) genomic_reference:SL2.40ch01 gene_region:74205900-74212696 transcript_region:SL2.40ch01:74205900..74212696- go_terms:GO:0003918 functional_description:"DNA topoisomerase 2 (AHRD V1 **** Q8GSC4_TOBAC); contains Interpro domain(s) IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal "; GO:0003918 NbS00009482g0014.1 protein ; (*GB) gi|255568713|ref|XP_002525328.1| (e_value=8e-21) sugar transporter, putative [Ricinus communis];; (*SWP) sp|Q0WVE9|PLST1_ARATH (e_value=2e-19) Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2;; (*TAIR) AT1G05030.1 (e_value=2e-20) | Symbols: | Major facilitator superfamily protein | chr1:1438324-1441385 REVERSE LENGTH=524;; (*ITAG) Solyc07g049310.2.1 (e_value=4e-25) genomic_reference:SL2.40ch07 gene_region:56883036-56891636 transcript_region:SL2.40ch07:56883036..56891636+ go_terms:GO:0015519,GO:0008506 functional_description:"D-xylose transporter (AHRD V1 **** D0DTW3_LACFE); contains Interpro domain(s) IPR003663 Sugar/inositol transporter "; GO:0015519,GO:0008506 NbS00009482g0009.1 protein ; (*GB) gi|42566949|ref|NP_567579.2| (e_value=2e-27) GDA1/CD39 nucleoside phosphatase family protein [Arabidopsis thaliana];; (*TAIR) AT4G19180.1 (e_value=5e-30) | Symbols: | GDA1/CD39 nucleoside phosphatase family protein | chr4:10485518-10487868 REVERSE LENGTH=740;; (*ITAG) Solyc05g052490.2.1 (e_value=4e-41) genomic_reference:SL2.40ch05 gene_region:61845448-61849046 transcript_region:SL2.40ch05:61845448..61849046- go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 1 (AHRD V1 *--- Q6DC46_DANRE); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00031250g0004.1 protein ; (*ITAG) Solyc08g075840.2.1 (e_value=2e-22) genomic_reference:SL2.40ch08 gene_region:57089376-57093498 transcript_region:SL2.40ch08:57089376..57093498+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 *-** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0003697 NbS00030708g0005.1 protein ; (*GB) gi|147853209|emb|CAN78548.1| (e_value=4e-88) hypothetical protein VITISV_000123 [Vitis vinifera];; (*TAIR) AT4G13750.1 (e_value=4e-41) | Symbols: NOV | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:7975191-7987558 FORWARD LENGTH=2729;; (*ITAG) Solyc09g092100.2.1 (e_value=2e-83) genomic_reference:SL2.40ch09 gene_region:66589275-66608601 transcript_region:SL2.40ch09:66589275..66608601+ go_terms:GO:0005524 functional_description:"Predicted CDS Pa_5_8110 (Fragment) (AHRD V1 *--- B2AKK2_PODAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00016295g0002.1 protein NbS00016578g0107.1 protein NbS00028492g0004.1 protein NbS00028492g0006.1 protein NbS00012809g0005.1 protein NbS00032643g0002.1 protein ; (*GB) gi|147864333|emb|CAN83002.1| (e_value=3e-12) hypothetical protein VITISV_003696 [Vitis vinifera]; NbS00045887g0012.1 protein ; (*GB) gi|359491637|ref|XP_002280859.2| (e_value=4e-73) PREDICTED: histone deacetylase 5-like [Vitis vinifera];; (*SWP) sp|Q8RX28|HDA5_ARATH (e_value=2e-67) Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1;; (*TAIR) AT5G61060.2 (e_value=2e-68) | Symbols: HDA05 | histone deacetylase 5 | chr5:24567137-24570917 REVERSE LENGTH=664;; (*ITAG) Solyc03g115150.2.1 (e_value=2e-64) genomic_reference:SL2.40ch03 gene_region:58987933-59002207 transcript_region:SL2.40ch03:58987933..59002207- go_terms:GO:0031078 functional_description:"Histone deacetylase (AHRD V1 **** B9H356_POPTR); contains Interpro domain(s) IPR000286 Histone deacetylase superfamily "; GO:0031078 NbS00002096g0006.1 protein NbS00005292g0004.1 protein ; (*GB) gi|225456844|ref|XP_002279018.1| (e_value=7e-20) PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Vitis vinifera];; (*SWP) sp|Q9SS90|RGLG1_ARATH (e_value=4e-18) E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1;; (*TAIR) AT3G01650.1 (e_value=3e-19) | Symbols: RGLG1 | RING domain ligase1 | chr3:242734-245062 FORWARD LENGTH=489;; (*ITAG) Solyc03g111870.2.1 (e_value=7e-22) genomic_reference:SL2.40ch03 gene_region:56519079-56524942 transcript_region:SL2.40ch03:56519079..56524942- go_terms:GO:0004842 functional_description:"Copine-like protein (AHRD V1 ***- Q153E2_ORYSJ); contains Interpro domain(s) IPR010734 Copine "; GO:0004842 NbS00017100g0006.1 protein NbS00017100g0007.1 protein NbS00023228g0003.1 protein NbS00025537g0003.1 protein NbS00022513g0007.1 protein NbS00022513g0010.1 protein NbS00049861g0001.1 protein NbS00047921g0004.1 protein NbS00052590g0005.1 protein NbS00060652g0001.1 protein NbS00018510g0010.1 protein NbS00038033g0002.1 protein NbS00038033g0003.1 protein NbS00011675g0004.1 protein ; (*GB) gi|302142122|emb|CBI19325.3| (e_value=2e-120) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q94K01|DBR1_ARATH (e_value=1e-113) Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1;; (*TAIR) AT4G31770.1 (e_value=1e-114) | Symbols: ATDBR1, DBR1 | debranching enzyme 1 | chr4:15370296-15372422 REVERSE LENGTH=418;; (*ITAG) Solyc07g017640.2.1 (e_value=2e-130) genomic_reference:SL2.40ch07 gene_region:7715733-7722729 transcript_region:SL2.40ch07:7715733..7722729+ go_terms:GO:0008419 functional_description:"Lariat debranching enzyme (AHRD V1 **** B6U6X4_MAIZE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0008419 NbS00042039g0006.1 protein ; (*GB) gi|359472802|ref|XP_002271275.2| (e_value=1e-51) PREDICTED: probable methyltransferase PMT5-like [Vitis vinifera];; (*SWP) sp|Q9C9Q8|PMTT_ARATH (e_value=2e-47) Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2;; (*TAIR) AT1G78240.2 (e_value=1e-48) | Symbols: TSD2, QUA2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29433173-29435815 REVERSE LENGTH=684;; (*ITAG) Solyc05g012450.2.1 (e_value=6e-66) genomic_reference:SL2.40ch05 gene_region:5691059-5696583 transcript_region:SL2.40ch05:5691059..5696583- go_terms:GO:0016020 functional_description:"Dehydration-responsive family protein (AHRD V1 ***- D7LDR4_ARALY); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "; GO:0016020 NbS00012490g0004.1 protein NbS00012490g0005.1 protein ; (*GB) gi|147799024|emb|CAN72567.1| (e_value=7e-16) hypothetical protein VITISV_044177 [Vitis vinifera]; NbS00029089g0002.1 protein NbS00001725g0104.1 protein NbC23660990g0001.1 protein ; (*GB) gi|359488631|ref|XP_002270911.2| (e_value=2e-35) PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform [Vitis vinifera];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=1e-35) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.2 (e_value=9e-37) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=510;; (*ITAG) Solyc02g067980.2.1 (e_value=2e-37) genomic_reference:SL2.40ch02 gene_region:32618330-32625924 transcript_region:SL2.40ch02:32618330..32625924- go_terms:GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0019901 NbS00060648g0001.1 protein ; (*GB) gi|255551068|ref|XP_002516582.1| (e_value=2e-31) DNA polymerase theta, putative [Ricinus communis];; (*TAIR) AT4G32700.2 (e_value=4e-31) | Symbols: | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding | chr4:15767440-15779185 FORWARD LENGTH=2154;; (*ITAG) Solyc08g068120.1.1 (e_value=6e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:54406897-54423148 transcript_region:SL2.40ch08:54406897..54423148+ go_terms:GO:0005524,GO:0006260 functional_description:"DNA polymerase I family protein expressed (AHRD V1 ***- Q2QTK2_ORYSJ); contains Interpro domain(s) IPR001098 DNA-directed DNA polymerase, family A "; GO:0005524,GO:0006260 NbS00001426g0006.1 protein NbS00022020g0005.1 protein ; (*ITAG) Solyc02g043820.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022020g0007.1 protein NbC23978515g0001.1 protein ; (*GB) gi|357468145|ref|XP_003604357.1| (e_value=3e-15) Tetratricopeptide-like helical domain-containing protein [Medicago truncatula];; (*ITAG) Solyc06g068230.2.1 (e_value=1e-31) genomic_reference:SL2.40ch06 gene_region:38675059-38684575 transcript_region:SL2.40ch06:38675059..38684575+ go_terms:GO:0005488 functional_description:"Protein TIF31 homolog (AHRD V1 *--- TIF31_NEUCR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00019873g0105.1 protein NbS00019873g0106.1 protein NbS00019873g0206.1 protein NbS00031631g0001.1 protein NbS00031631g0002.1 protein NbS00032903g0005.1 protein NbS00032903g0008.1 protein ; (*ITAG) Solyc10g006430.1.1 (e_value=4e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:1040838-1042352 transcript_region:SL2.40ch10:1040838..1042352+ functional_description:"Unknown Protein (AHRD V1)"; NbS00001684g0007.1 protein ; (*GB) gi|388521693|gb|AFK48908.1| (e_value=9e-23) unknown [Lotus japonicus];; (*SWP) sp|Q91XF4|RN167_MOUSE (e_value=7e-14) E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1;; (*TAIR) AT1G04790.1 (e_value=3e-13) | Symbols: | RING/U-box superfamily protein | chr1:1345469-1348143 FORWARD LENGTH=634;; (*ITAG) Solyc07g007200.2.1 (e_value=4e-13) genomic_reference:SL2.40ch07 gene_region:1939982-1946761 transcript_region:SL2.40ch07:1939982..1946761- go_terms:GO:0008270 functional_description:"Ring finger protein 12 (AHRD V1 *-*- Q4V889_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00051480g0002.1 protein NbS00014162g0009.1 protein NbS00028778g0001.1 protein NbS00001673g0004.1 protein ; (*ITAG) Solyc03g083440.2.1 (e_value=4e-13) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00001673g0006.1 protein ; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=1e-14) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=3e-14) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=2e-15) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc07g006690.2.1 (e_value=2e-27) genomic_reference:SL2.40ch07 gene_region:1547767-1557882 transcript_region:SL2.40ch07:1547767..1557882- go_terms:GO:0003824 functional_description:"Potential lipid particle serine esterase (AHRD V1 *--- Q59KL3_CANAL); contains Interpro domain(s) IPR007751 Protein of unknown function DUF676, hydrolase-like "; GO:0003824 NbC23785289g0001.1 protein ; (*GB) gi|308229874|gb|ADO24345.1| (e_value=9e-37) cytochrome P450 A [Capsicum annuum];; (*SWP) sp|P85191|CP450_HELAN (e_value=8e-25) Cytochrome P450 (Fragment) OS=Helianthus annuus PE=1 SV=1;; (*TAIR) AT3G48520.1 (e_value=3e-28) | Symbols: CYP94B3 | cytochrome P450, family 94, subfamily B, polypeptide 3 | chr3:17975104-17976624 REVERSE LENGTH=506;; (*ITAG) Solyc03g111290.1.1 (e_value=5e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:55958989-55960473 transcript_region:SL2.40ch03:55958989..55960473- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00033072g0002.1 protein NbC23979665g0001.1 protein ; (*GB) gi|225457753|ref|XP_002278084.1| (e_value=4e-28) PREDICTED: transmembrane protein 184C [Vitis vinifera];; (*TAIR) AT1G77220.1 (e_value=3e-27) | Symbols: | Protein of unknown function (DUF300) | chr1:29013232-29015530 FORWARD LENGTH=484;; (*ITAG) Solyc04g064850.2.1 (e_value=1e-32) genomic_reference:SL2.40ch04 gene_region:55133469-55140024 transcript_region:SL2.40ch04:55133469..55140024+ go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- A5D9H3_BOVIN); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00031087g0004.1 protein NbS00023273g0008.1 protein NbS00023273g0009.1 protein NbS00023273g0010.1 protein NbS00000286g0007.1 protein NbS00037370g0002.1 protein NbS00013528g0005.1 protein NbS00010466g0005.1 protein NbS00010466g0006.1 protein NbS00010466g0007.1 protein ; (*GB) gi|297742739|emb|CBI35373.3| (e_value=2e-14) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc04g008880.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00001845g0005.1 protein ; (*GB) gi|255559909|ref|XP_002520973.1| (e_value=1e-31) histone acetyltransferase gcn5, putative [Ricinus communis];; (*SWP) sp|Q338B9|GCN5_ORYSJ (e_value=9e-30) Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica GN=GCN5 PE=2 SV=1;; (*TAIR) AT3G54610.1 (e_value=1e-26) | Symbols: HAT1, GCN5, HAG1, HAC3, HAG01, BGT | histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568;; (*ITAG) Solyc10g045400.1.1 (e_value=1e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:28736818-28754359 transcript_region:SL2.40ch10:28736818..28754359- go_terms:GO:0010484 functional_description:"Histone acetyltransferase GCN5 (AHRD V1 *-** Q0CT35_ASPTN); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0010484 NbS00017403g0012.1 protein NbS00017403g0007.1 protein NbS00007928g0002.1 protein NbS00023195g0004.1 protein NbS00034845g0004.1 protein NbS00002827g0007.1 protein NbS00032250g0012.1 protein ; (*GB) gi|356551424|ref|XP_003544075.1| (e_value=6e-42) PREDICTED: clathrin heavy chain 1-like [Glycine max];; (*SWP) sp|Q0WLB5|CLAH2_ARATH (e_value=8e-42) Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1;; (*TAIR) AT3G08530.1 (e_value=6e-43) | Symbols: | Clathrin, heavy chain | chr3:2587171-2595411 REVERSE LENGTH=1703;; (*ITAG) Solyc06g051310.2.1 (e_value=1e-45) genomic_reference:SL2.40ch06 gene_region:31032238-31043527 transcript_region:SL2.40ch06:31032238..31043527+ go_terms:GO:0030506,GO:0005198,GO:0031072 functional_description:"Clathrin heavy chain (AHRD V1 ***- Q39834_SOYBN); contains Interpro domain(s) IPR016341 Clathrin, heavy chain "; GO:0030506,GO:0005198,GO:0031072 NbS00032250g0006.1 protein ; (*GB) gi|18076679|emb|CAC84774.1| (e_value=1e-19) P70 protein [Nicotiana tabacum];; (*ITAG) Solyc10g086030.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64334549-64337457 transcript_region:SL2.40ch10:64334549..64337457- functional_description:"Interactor of constitutive active ROPs 3 (AHRD V1 ***- ICR3_ARATH)"; NbS00030792g0012.1 protein NbS00030792g0005.1 protein NbS00030792g0006.1 protein NbS00031743g0007.1 protein NbS00043512g0002.1 protein NbS00043512g0004.1 protein NbS00000522g0007.1 protein NbS00023525g0005.1 protein NbS00007026g0002.1 protein NbS00007026g0003.1 protein NbS00002415g0001.1 protein ; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=2e-41) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=3e-40) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=3e-41) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc12g005990.1.1 (e_value=2e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:608257-613415 transcript_region:SL2.40ch12:608257..613415+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00003479g0011.1 protein NbS00003479g0014.1 protein NbS00003479g0016.1 protein NbS00003479g0017.1 protein NbS00017237g0004.1 protein ; (*GB) gi|118484446|gb|ABK94099.1| (e_value=2e-22) unknown [Populus trichocarpa];; (*TAIR) AT5G52190.1 (e_value=3e-22) | Symbols: | Sugar isomerase (SIS) family protein | chr5:21201817-21202443 REVERSE LENGTH=208;; (*ITAG) Solyc03g025990.1.1 (e_value=2e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:7788120-7788731 transcript_region:SL2.40ch03:7788120..7788731+ functional_description:"Hexulose-6-phosphate isomerase (AHRD V1 **-- Q2RUM7_RHORT)"; NbS00017237g0005.1 protein NbS00017237g0007.1 protein NbS00017237g0008.1 protein NbS00038240g0002.1 protein ; (*GB) gi|224069559|ref|XP_002326373.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT2G43630.1 (e_value=4e-18) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18096255-18097344 FORWARD LENGTH=274;; (*ITAG) Solyc04g054460.2.1 (e_value=1e-44) genomic_reference:SL2.40ch04 gene_region:51700624-51707012 transcript_region:SL2.40ch04:51700624..51707012- functional_description:"Glycine-rich protein (AHRD V1 ***- D7LWF3_ARALY)"; NbS00012609g0003.1 protein NbS00012609g0004.1 protein NbS00049471g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-29) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00009074g0008.1 protein ; (*ITAG) Solyc04g078440.2.1 (e_value=2e-25) genomic_reference:SL2.40ch04 gene_region:60775938-60777179 transcript_region:SL2.40ch04:60775938..60777179+ functional_description:"Acetyl xylan esterase A (AHRD V1 **-- D7J664_9BACE); contains Interpro domain(s) IPR005181 Protein of unknown function DUF303, acetylesterase putative "; NbS00009074g0402.1 protein NbS00002014g0003.1 protein NbS00059663g0001.1 protein ; (*GB) gi|2829792|sp|P93568.1|SSY1_SOLTU (e_value=2e-35) RecName: Full=Soluble starch synthase 1, chloroplastic/amyloplastic; AltName: Full=Soluble starch synthase I; Short=SS I; Flags: Precursor;; (*SWP) sp|P93568|SSY1_SOLTU (e_value=7e-37) Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G24300.2 (e_value=2e-27) | Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652;; (*ITAG) Solyc03g083090.2.1 (e_value=7e-38) genomic_reference:SL2.40ch03 gene_region:46453496-46464681 transcript_region:SL2.40ch03:46453496..46464681- go_terms:GO:0016757,GO:0005515 functional_description:"Glycogen synthase (AHRD V1 ***- D5MWN9_BACSU); contains Interpro domain(s) IPR011835 Glycogen/starch synthases, ADP-glucose type "; GO:0016757,GO:0005515 NbS00016174g0007.1 protein NbS00019980g0005.1 protein NbS00029450g0005.1 protein NbS00029450g0006.1 protein NbS00029450g0008.1 protein NbS00029450g0010.1 protein NbS00009306g0112.1 protein NbS00009306g0116.1 protein NbS00009306g0117.1 protein NbS00006610g0003.1 protein ; (*GB) gi|356543801|ref|XP_003540348.1| (e_value=4e-29) PREDICTED: putative secretory carrier-associated membrane protein 1-like [Glycine max];; (*SWP) sp|Q9SKT3|SCAM1_ARATH (e_value=1e-27) Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=1 SV=1;; (*TAIR) AT2G20840.1 (e_value=1e-28) | Symbols: | Secretory carrier membrane protein (SCAMP) family protein | chr2:8971925-8974400 REVERSE LENGTH=282;; (*ITAG) Solyc10g008550.2.1 (e_value=7e-37) genomic_reference:SL2.40ch10 gene_region:2660906-2664027 transcript_region:SL2.40ch10:2660906..2664027+ go_terms:GO:0022857 functional_description:"Secretory carrier membrane protein (AHRD V1 ***- B3TLU6_ELAGV); contains Interpro domain(s) IPR007273 SCAMP "; GO:0022857 NbS00010361g0006.1 protein NbS00010361g0008.1 protein NbS00010361g0009.1 protein NbS00018274g0003.1 protein NbS00018274g0004.1 protein NbS00046233g0003.1 protein ; (*GB) gi|147853522|emb|CAN78534.1| (e_value=1e-45) hypothetical protein VITISV_006311 [Vitis vinifera];; (*TAIR) AT2G01918.1 (e_value=5e-26) | Symbols: PQL3 | PsbQ-like 3 | chr2:424254-425678 REVERSE LENGTH=187; NbS00046233g0004.1 protein NbS00012480g0002.1 protein ; (*GB) gi|296086008|emb|CBI31449.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LYW0|Y5325_ARATH (e_value=2e-41) BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1;; (*TAIR) AT5G03250.1 (e_value=1e-42) | Symbols: | Phototropic-responsive NPH3 family protein | chr5:774591-776855 FORWARD LENGTH=592;; (*ITAG) Solyc09g007820.1.1 (e_value=1e-70) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:1348239-1351133 transcript_region:SL2.40ch09:1348239..1351133+ go_terms:GO:0005515,GO:0009416 functional_description:"Phototropic-responsive NPH3 family protein (AHRD V1 **-- D7KEU3_ARALY); contains Interpro domain(s) IPR004249 NPH3 "; GO:0005515,GO:0009416 NbS00041747g0004.1 protein NbS00014668g0004.1 protein NbS00014668g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-41) hypothetical protein [Nicotiana tabacum]; NbS00029684g0018.1 protein NbS00013439g0002.1 protein NbS00028273g0002.1 protein NbS00028273g0003.1 protein NbS00053347g0001.1 protein NbS00003159g0007.1 protein NbS00021743g0002.1 protein NbS00024591g0003.1 protein ; (*GB) gi|358248578|ref|NP_001239905.1| (e_value=7e-15) uncharacterized protein LOC100817971 [Glycine max];; (*SWP) sp|P49637|R27A3_ARATH (e_value=8e-16) 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2;; (*TAIR) AT1G70600.1 (e_value=6e-17) | Symbols: | Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146;; (*ITAG) Solyc03g112360.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:56836935-56837381 transcript_region:SL2.40ch03:56836935..56837381+ go_terms:GO:0003735 functional_description:"60S ribosomal protein L27A (AHRD V1 ***- B6VC54_VERFO); contains Interpro domain(s) IPR001196 Ribosomal protein L15 "; GO:0003735 NbS00007958g0103.1 protein NbS00007958g0104.1 protein NbS00006504g0004.1 protein NbS00006504g0005.1 protein ; (*ITAG) Solyc06g062790.2.1 (e_value=4e-15) genomic_reference:SL2.40ch06 gene_region:36002715-36009438 transcript_region:SL2.40ch06:36002715..36009438+ go_terms:GO:0006468 functional_description:"Casein kinase I-like (AHRD V1 ***- Q8LR51_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC23814427g0001.1 protein ; (*GB) gi|302141793|emb|CBI18996.3| (e_value=1e-15) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G77460.2 (e_value=9e-14) | Symbols: | Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein | chr1:29104378-29111580 FORWARD LENGTH=2136;; (*ITAG) Solyc11g017460.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8409733-8419900 transcript_region:SL2.40ch11:8409733..8419900+ go_terms:GO:0005488,GO:0004522 functional_description:"C2 domain-containing protein (AHRD V1 ***- D7KUJ4_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0004522 NbS00042758g0009.1 protein NbS00001613g0001.1 protein NbS00000635g0003.1 protein NbS00028185g0006.1 protein NbS00010864g0005.1 protein NbS00006669g0005.1 protein NbS00037525g0003.1 protein NbS00011015g0011.1 protein NbS00011015g0018.1 protein NbS00008946g0005.1 protein ; (*GB) gi|255573758|ref|XP_002527800.1| (e_value=4e-112) phosphoglucomutase, putative [Ricinus communis];; (*TAIR) AT1G70820.1 (e_value=4e-102) | Symbols: | phosphoglucomutase, putative / glucose phosphomutase, putative | chr1:26705594-26708034 FORWARD LENGTH=615;; (*ITAG) Solyc05g026490.2.1 (e_value=5e-113) genomic_reference:SL2.40ch05 gene_region:41503421-41512872 transcript_region:SL2.40ch05:41503421..41512872- go_terms:GO:0004614,GO:0004615 functional_description:"Phosphoglucomutase/phosphomannomutase family protein (AHRD V1 **-* A3IPW6_9CHRO); contains Interpro domain(s) IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III "; GO:0004614,GO:0004615 NbS00034183g0002.1 protein NbS00011424g0003.1 protein NbC25398031g0002.1 protein ; (*ITAG) Solyc04g008700.2.1 (e_value=1e-12) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00054537g0004.1 protein ; (*ITAG) Solyc06g011460.1.1 (e_value=6e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:7537655-7538529 transcript_region:SL2.40ch06:7537655..7538529- functional_description:"Unknown Protein (AHRD V1)"; NbS00031093g0003.1 protein NbS00031093g0004.1 protein NbS00000394g0006.1 protein ; (*GB) gi|255553415|ref|XP_002517749.1| (e_value=4e-38) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G30300.1 (e_value=5e-26) | Symbols: | Major facilitator superfamily protein | chr2:12919401-12921222 FORWARD LENGTH=500;; (*ITAG) Solyc08g074960.2.1 (e_value=3e-12) genomic_reference:SL2.40ch08 gene_region:56264924-56268960 transcript_region:SL2.40ch08:56264924..56268960+ functional_description:"Nodulin-like family protein expressed (AHRD V1 ***- Q2QYU1_ORYSJ); contains Interpro domain(s) IPR010658 Nodulin-like "; NbS00037489g0002.1 protein ; (*ITAG) Solyc03g034340.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:10409780-10414742 transcript_region:SL2.40ch03:10409780..10414742+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00037489g0003.1 protein NbS00040890g0004.1 protein NbS00040890g0005.1 protein ; (*ITAG) Solyc12g044200.1.1 (e_value=4e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44488887-44494577 transcript_region:SL2.40ch12:44488887..44494577- go_terms:GO:0006952,GO:0017111,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0017111,GO:0006915 NbS00040890g0006.1 protein NbS00040890g0009.1 protein NbS00006753g0004.1 protein NbS00042181g0001.1 protein NbS00007166g0004.1 protein ; (*ITAG) Solyc08g007110.2.1 (e_value=7e-15) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00022000g0006.1 protein NbS00022000g0007.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=7e-21) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00022000g0008.1 protein NbS00013215g0006.1 protein ; (*ITAG) Solyc02g088160.2.1 (e_value=1e-13) genomic_reference:SL2.40ch02 gene_region:44899497-44904078 transcript_region:SL2.40ch02:44899497..44904078+ functional_description:"UPF0497 membrane protein Os06g0231050 (AHRD V1 *-*- U4974_ORYSJ); contains Interpro domain(s) IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup "; NbS00034638g0005.1 protein NbS00034638g0007.1 protein ; (*GB) gi|225438527|ref|XP_002279361.1| (e_value=3e-34) PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera];; (*TAIR) AT1G10490.1 (e_value=1e-20) | Symbols: | Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) | chr1:3453589-3459925 FORWARD LENGTH=1028;; (*ITAG) Solyc04g051670.2.1 (e_value=5e-51) genomic_reference:SL2.40ch04 gene_region:50113944-50129636 transcript_region:SL2.40ch04:50113944..50129636+ go_terms:GO:0005515 functional_description:"N-acetyltransferase 10 (AHRD V1 **-- A5WVQ0_DANRE); contains Interpro domain(s) IPR007807 Protein of unknown function DUF699, ATPase putative "; GO:0005515 NbS00003652g0007.1 protein ; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=5e-30) potassium channel [Nicotiana paniculata];; (*ITAG) Solyc01g104030.2.1 (e_value=2e-28) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00030694g0003.1 protein NbS00013606g0003.1 protein NbS00019334g0005.1 protein NbS00019334g0006.1 protein NbS00004159g0006.1 protein NbS00004159g0010.1 protein ; (*GB) gi|224137312|ref|XP_002322526.1| (e_value=4e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=4e-31) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=3e-32) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc09g005160.1.1 (e_value=7e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:151592-155869 transcript_region:SL2.40ch09:151592..155869+ go_terms:GO:0043008 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-*- B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0043008 NbS00023872g0006.1 protein NbS00043092g0002.1 protein ; (*GB) gi|225432236|ref|XP_002270713.1| (e_value=3e-34) PREDICTED: uncharacterized protein At3g17611 [Vitis vinifera];; (*SWP) sp|Q8RXW0|Y3761_ARATH (e_value=2e-31) Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1;; (*TAIR) AT3G17611.1 (e_value=2e-32) | Symbols: ATRBL14, RBL14 | RHOMBOID-like protein 14 | chr3:6024946-6026173 FORWARD LENGTH=334;; (*ITAG) Solyc07g042930.2.1 (e_value=6e-40) genomic_reference:SL2.40ch07 gene_region:53809257-53811891 transcript_region:SL2.40ch07:53809257..53811891+ go_terms:GO:0016021,GO:0005622 functional_description:"Rhomboid domain-containing protein 1 (AHRD V1 *-*- B5X3K7_SALSA); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021,GO:0005622 NbS00043092g0004.1 protein ; (*GB) gi|224114547|ref|XP_002316790.1| (e_value=6e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT1G53650.2 (e_value=1e-27) | Symbols: CID8 | CTC-interacting domain 8 | chr1:20029262-20031243 REVERSE LENGTH=308;; (*ITAG) Solyc12g011340.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4183346-4190442 transcript_region:SL2.40ch12:4183346..4190442+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *-*- D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00018413g0001.1 protein NbS00024178g0007.1 protein NbS00023313g0016.1 protein ; (*GB) gi|147773857|emb|CAN63015.1| (e_value=7e-15) hypothetical protein VITISV_017408 [Vitis vinifera]; NbS00023313g0018.1 protein NbS00060553g0004.1 protein NbS00001563g0008.1 protein NbS00001563g0009.1 protein NbS00001563g0010.1 protein NbS00030136g0006.1 protein NbS00030136g0008.1 protein NbS00003840g0010.1 protein ; (*GB) gi|350539543|ref|NP_001233924.1| (e_value=6e-51) LAX5 protein [Solanum lycopersicum];; (*SWP) sp|Q9S836|LAX2_ARATH (e_value=1e-47) Auxin transporter-like protein 2 OS=Arabidopsis thaliana GN=LAX2 PE=2 SV=1;; (*TAIR) AT2G21050.1 (e_value=1e-48) | Symbols: LAX2 | like AUXIN RESISTANT 2 | chr2:9034289-9036439 FORWARD LENGTH=483;; (*ITAG) Solyc10g055260.1.1 (e_value=1e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51998467-52003224 transcript_region:SL2.40ch10:51998467..52003224- functional_description:"Auxin transporter-like protein 3 (AHRD V1 ***- B6TPT6_MAIZE); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; NbS00045650g0103.1 protein NbS00010660g0004.1 protein NbS00015769g0003.1 protein NbS00014732g0004.1 protein NbS00034227g0004.1 protein NbS00017480g0008.1 protein NbC23578112g0001.1 protein ; (*GB) gi|225465856|ref|XP_002265532.1| (e_value=4e-24) PREDICTED: phosphatidylinositol-4-phosphate 5-kinase 6-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SFB8|PI5K6_ARATH (e_value=6e-25) Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana GN=PIP5K6 PE=2 SV=1;; (*TAIR) AT3G07960.1 (e_value=5e-26) | Symbols: | Phosphatidylinositol-4-phosphate 5-kinase family protein | chr3:2535274-2538090 FORWARD LENGTH=715;; (*ITAG) Solyc01g096410.2.1 (e_value=8e-36) genomic_reference:SL2.40ch01 gene_region:79270399-79274213 transcript_region:SL2.40ch01:79270399..79274213- go_terms:GO:0006508,GO:0046488,GO:0016308 functional_description:"Phosphatidylinositol-4-phosphate 5-kinase family protein (AHRD V1 ***- D7L735_ARALY); contains Interpro domain(s) IPR017163 Phosphatidylinositol-4-phosphate 5-kinase, plant "; GO:0006508,GO:0046488,GO:0016308 NbS00032425g0008.1 protein NbS00016427g0009.1 protein NbS00000046g0003.1 protein NbS00005026g0113.1 protein NbS00017488g0110.1 protein NbS00023839g0005.1 protein NbS00011106g0002.1 protein NbS00005839g0004.1 protein NbS00018174g0004.1 protein NbS00027571g0001.1 protein NbS00033146g0006.1 protein NbS00030171g0003.1 protein NbS00030171g0006.1 protein NbS00012642g0007.1 protein ; (*ITAG) Solyc11g011790.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4777374-4779490 transcript_region:SL2.40ch11:4777374..4779490- go_terms:GO:0005488 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00012642g0009.1 protein ; (*ITAG) Solyc10g054680.1.1 (e_value=4e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:51207770-51208849 transcript_region:SL2.40ch10:51207770..51208849+ functional_description:"Mutator-like transposase-like (AHRD V1 *--- Q9FH11_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00011737g0012.1 protein NbS00030459g0012.1 protein NbS00030459g0015.1 protein ; (*GB) gi|238011252|gb|ACR36661.1| (e_value=2e-24) unknown [Zea mays]; NbS00030459g0016.1 protein ; (*GB) gi|356520911|ref|XP_003529103.1| (e_value=9e-13) PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Glycine max];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=2e-13) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT4G37120.1 (e_value=4e-12) | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting factor | chr4:17486679-17489123 FORWARD LENGTH=536;; (*ITAG) Solyc06g083890.2.1 (e_value=7e-18) genomic_reference:SL2.40ch06 gene_region:45471390-45477059 transcript_region:SL2.40ch06:45471390..45477059- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00030459g0009.1 protein NbS00030459g0010.1 protein NbS00040638g0006.1 protein ; (*GB) gi|225442793|ref|XP_002285244.1| (e_value=1e-26) PREDICTED: V-type proton ATPase 21 kDa proteolipid subunit isoform 1 [Vitis vinifera];; (*SWP) sp|P23968|VATO_YEAST (e_value=2e-14) V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VMA16 PE=1 SV=1;; (*TAIR) AT4G32530.1 (e_value=3e-24) | Symbols: | ATPase, F0/V0 complex, subunit C protein | chr4:15693399-15694958 REVERSE LENGTH=180;; (*ITAG) Solyc08g067480.2.1 (e_value=8e-35) genomic_reference:SL2.40ch08 gene_region:53706433-53711129 transcript_region:SL2.40ch08:53706433..53711129- go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase proteolipid subunit (AHRD V1 **** D3PI45_9MAXI); contains Interpro domain(s) IPR000245 ATPase, V0 complex, proteolipid subunit C "; GO:0005515,GO:0046961 NbS00026706g0009.1 protein NbS00038323g0003.1 protein NbS00038371g0003.1 protein ; (*GB) gi|224055015|ref|XP_002298402.1| (e_value=2e-24) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g065740.1.1 (e_value=4e-43) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:48417851-48421065 transcript_region:SL2.40ch11:48417851..48421065+ functional_description:"RbcX protein (AHRD V1 *-*- Q5W3L8_9NOST); contains Interpro domain(s) IPR003435 Chaperonin-like RbcX "; NbS00043908g0005.1 protein ; (*GB) gi|224090117|ref|XP_002308940.1| (e_value=2e-30) predicted protein [Populus trichocarpa];; (*TAIR) AT4G23540.1 (e_value=2e-21) | Symbols: | ARM repeat superfamily protein | chr4:12280547-12286420 REVERSE LENGTH=1131;; (*ITAG) Solyc04g015940.2.1 (e_value=1e-73) genomic_reference:SL2.40ch04 gene_region:6462961-6486905 transcript_region:SL2.40ch04:6462961..6486905+ go_terms:GO:0005488 functional_description:"Ribosomal RNA-processing protein (AHRD V1 *--- C1GNI2_PARBA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00024538g0001.1 protein NbS00016377g0003.1 protein NbS00016504g0011.1 protein NbS00016504g0012.1 protein NbS00006330g0003.1 protein ; (*GB) gi|255564107|ref|XP_002523051.1| (e_value=8e-13) conserved hypothetical protein [Ricinus communis]; NbS00035668g0002.1 protein NbS00015541g0002.1 protein NbS00004320g0003.1 protein NbS00034542g0001.1 protein NbS00034542g0003.1 protein NbS00009697g0004.1 protein ; (*GB) gi|359495063|ref|XP_002267993.2| (e_value=3e-20) PREDICTED: probable inactive purple acid phosphatase 27-like [Vitis vinifera];; (*ITAG) Solyc01g068380.2.1 (e_value=9e-29) genomic_reference:SL2.40ch01 gene_region:69972924-69982844 transcript_region:SL2.40ch01:69972924..69982844- go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 *-** B6TKL3_MAIZE); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722,GO:0005515 NbS00023456g0008.1 protein NbS00005020g0006.1 protein NbS00021187g0005.1 protein NbS00006385g0102.1 protein NbS00036891g0001.1 protein NbS00014965g0001.1 protein NbS00014965g0002.1 protein NbS00014965g0003.1 protein NbS00024485g0005.1 protein ; (*GB) gi|359482394|ref|XP_003632768.1| (e_value=6e-17) PREDICTED: uncharacterized protein LOC100853579 [Vitis vinifera];; (*ITAG) Solyc03g117470.2.1 (e_value=1e-35) genomic_reference:SL2.40ch03 gene_region:60668427-60673467 transcript_region:SL2.40ch03:60668427..60673467- go_terms:GO:0005509 functional_description:"Calcineurin subunit B (AHRD V1 *-*- B6U4N5_MAIZE); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00005805g0006.1 protein NbS00036868g0001.1 protein ; (*GB) gi|225464525|ref|XP_002270827.1| (e_value=3e-26) PREDICTED: uncharacterized protein LOC100254207 [Vitis vinifera];; (*TAIR) AT5G52440.1 (e_value=4e-19) | Symbols: HCF106 | Bacterial sec-independent translocation protein mttA/Hcf106 | chr5:21286896-21288613 FORWARD LENGTH=260;; (*ITAG) Solyc03g025310.2.1 (e_value=3e-43) genomic_reference:SL2.40ch03 gene_region:7131663-7139608 transcript_region:SL2.40ch03:7131663..7139608+ go_terms:GO:0015031,GO:0016021 functional_description:"Sec-independent protein translocase protein tatA/E homolog (AHRD V1 *-*- D4TUR0_9NOST); contains Interpro domain(s) IPR006312 Twin-arginine translocation protein TatA/E "; GO:0015031,GO:0016021 NbS00001474g0005.1 protein NbS00053922g0004.1 protein NbS00008205g0003.1 protein NbS00023161g0002.1 protein NbS00025899g0014.1 protein NbC24712036g0001.1 protein ; (*GB) gi|297743394|emb|CBI36261.3| (e_value=3e-61) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9C270|PWP2_NEUCR (e_value=2e-37) Periodic tryptophan protein 2 homolog OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B18D24.40 PE=3 SV=1;; (*TAIR) AT1G15440.2 (e_value=2e-60) | Symbols: PWP2 | periodic tryptophan protein 2 | chr1:5306159-5309460 REVERSE LENGTH=860;; (*ITAG) Solyc03g120080.2.1 (e_value=2e-43) genomic_reference:SL2.40ch03 gene_region:62626896-62632505 transcript_region:SL2.40ch03:62626896..62632505+ go_terms:GO:0030515 functional_description:"Periodic tryptophan protein 2 (AHRD V1 **-- D0MSR7_PHYIN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030515 NbS00012897g0009.1 protein ; (*GB) gi|297746420|emb|CBI16476.3| (e_value=1e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13670.1 (e_value=7e-29) | Symbols: | Protein kinase family protein | chr3:4469434-4473234 FORWARD LENGTH=703;; (*ITAG) Solyc01g006120.2.1 (e_value=4e-32) genomic_reference:SL2.40ch01 gene_region:776048-784378 transcript_region:SL2.40ch01:776048..784378+ go_terms:GO:0006468 functional_description:"Casein kinase-like protein (AHRD V1 ***- Q9LID3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010213g0003.1 protein NbS00010213g0004.1 protein ; (*GB) gi|302143619|emb|CBI22372.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G28850.2 (e_value=4e-59) | Symbols: | Calcium-binding EF-hand family protein | chr5:10877360-10881278 REVERSE LENGTH=536;; (*ITAG) Solyc04g010070.2.1 (e_value=7e-86) genomic_reference:SL2.40ch04 gene_region:3365037-3378848 transcript_region:SL2.40ch04:3365037..3378848+ go_terms:GO:0005509 functional_description:"Protein phosphatase 2A regulatory subunit B&apos-like protein (AHRD V1 ***- Q56WJ0_ARATH); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00010213g0010.1 protein ; (*GB) gi|147773857|emb|CAN63015.1| (e_value=1e-17) hypothetical protein VITISV_017408 [Vitis vinifera]; NbS00030390g0003.1 protein NbS00014751g0003.1 protein NbS00008272g0002.1 protein NbS00010649g0004.1 protein NbS00032663g0005.1 protein NbS00009054g0002.1 protein NbS00022719g0004.1 protein NbS00001151g0004.1 protein ; (*GB) gi|224029287|gb|ACN33719.1| (e_value=9e-28) unknown [Zea mays]; NbS00026891g0004.1 protein ; (*GB) gi|357115774|ref|XP_003559661.1| (e_value=2e-14) PREDICTED: iron-sulfur protein NUBPL-like [Brachypodium distachyon];; (*SWP) sp|Q54F15|NUBPL_DICDI (e_value=2e-13) Iron-sulfur protein NUBPL OS=Dictyostelium discoideum GN=nubpl PE=3 SV=1;; (*ITAG) Solyc06g083990.2.1 (e_value=5e-24) genomic_reference:SL2.40ch06 gene_region:45555489-45559957 transcript_region:SL2.40ch06:45555489..45559957+ go_terms:GO:0042803 functional_description:"Cytosolic Fe-S cluster assembly factor NUBP1 homolog (AHRD V1 **-- NUBP1_DICDI); contains Interpro domain(s) IPR019591 ATPase-like, ParA/MinD "; GO:0042803 NbS00012620g0003.1 protein NbS00012620g0005.1 protein NbS00001294g0003.1 protein NbS00026112g0001.1 protein ; (*ITAG) Solyc12g062880.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:53511648-53515401 transcript_region:SL2.40ch12:53511648..53515401+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00054066g0002.1 protein ; (*GB) gi|225433790|ref|XP_002269080.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9M9X9|PPR18_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1;; (*TAIR) AT1G06710.1 (e_value=0.0) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2056999-2060242 REVERSE LENGTH=997;; (*ITAG) Solyc02g081250.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00054066g0004.1 protein ; (*GB) gi|147833287|emb|CAN77475.1| (e_value=2e-69) hypothetical protein VITISV_041111 [Vitis vinifera];; (*SWP) sp|Q9M9X9|PPR18_ARATH (e_value=4e-57) Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1;; (*TAIR) AT1G06710.1 (e_value=3e-58) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:2056999-2060242 REVERSE LENGTH=997;; (*ITAG) Solyc02g081250.1.1 (e_value=3e-108) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39856918-39867690 transcript_region:SL2.40ch02:39856918..39867690+ go_terms:GO:0005086 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7L610_ARALY); contains Interpro domain(s) IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II "; GO:0005086 NbS00033078g0006.1 protein NbS00025830g0006.1 protein NbS00042739g0004.1 protein NbS00013984g0008.1 protein NbS00021792g0004.1 protein NbS00021336g0011.1 protein NbS00025856g0003.1 protein NbS00022292g0001.1 protein ; (*GB) gi|225463623|ref|XP_002273367.1| (e_value=7e-22) PREDICTED: probable glycerol kinase isoform 1 [Vitis vinifera];; (*TAIR) AT1G80460.2 (e_value=2e-24) | Symbols: NHO1, GLI1 | Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=482;; (*ITAG) Solyc03g117490.2.1 (e_value=3e-26) genomic_reference:SL2.40ch03 gene_region:60690878-60693820 transcript_region:SL2.40ch03:60690878..60693820+ go_terms:GO:0006072,GO:0005975 functional_description:"Glycerol kinase (AHRD V1 ***- Q6RUF8_SOYBN); contains Interpro domain(s) IPR005999 Glycerol kinase "; GO:0006072,GO:0005975 NbS00005862g0009.1 protein NbS00043649g0002.1 protein NbS00009592g0001.1 protein NbS00020181g0003.1 protein NbS00020517g0005.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=5e-20) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00020517g0008.1 protein ; (*ITAG) Solyc03g007750.2.1 (e_value=6e-14) genomic_reference:SL2.40ch03 gene_region:2273944-2278750 transcript_region:SL2.40ch03:2273944..2278750- functional_description:"F-box family protein (AHRD V1 ***- D7MS95_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00045014g0002.1 protein ; (*GB) gi|255544936|ref|XP_002513529.1| (e_value=4e-68) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G12430.1 (e_value=3e-55) | Symbols: TPR16 | Heat shock protein DnaJ with tetratricopeptide repeat | chr5:4028475-4034086 REVERSE LENGTH=1165;; (*ITAG) Solyc11g065260.1.1 (e_value=1e-95) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47715490-47734377 transcript_region:SL2.40ch11:47715490..47734377- go_terms:GO:0005488,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- DNAJ_FUSNN); contains Interpro domain(s) IPR001623 Heat shock protein DnaJ, N-terminal "; GO:0005488,GO:0031072 NbS00060659g0001.1 protein NbS00037427g0002.1 protein ; (*GB) gi|296088056|emb|CBI35415.3| (e_value=9e-19) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6EP49|MAD27_ORYSJ (e_value=2e-16) MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2;; (*TAIR) AT2G22630.1 (e_value=3e-16) | Symbols: AGL17 | AGAMOUS-like 17 | chr2:9618372-9621641 FORWARD LENGTH=227;; (*ITAG) Solyc02g091550.1.1 (e_value=8e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:47387972-47395119 transcript_region:SL2.40ch02:47387972..47395119+ go_terms:GO:0005515,GO:0019841 functional_description:"MADS-box transcription factor-like protein (AHRD V1 ***- Q9M2M4_ARATH); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0005515,GO:0019841 NbS00016417g0006.1 protein ; (*TAIR) AT5G27520.1 (e_value=4e-14) | Symbols: PNC2 | peroxisomal adenine nucleotide carrier 2 | chr5:9714664-9716244 REVERSE LENGTH=321;; (*ITAG) Solyc01g079760.2.1 (e_value=6e-18) genomic_reference:SL2.40ch01 gene_region:71416626-71424710 transcript_region:SL2.40ch01:71416626..71424710+ go_terms:GO:0015217,GO:0005347 functional_description:"Mitochondrial carrier protein (AHRD V1 ***- C5P0Z3_COCP7); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015217,GO:0005347 NbC23929411g0001.1 protein ; (*GB) gi|225454795|ref|XP_002274101.1| (e_value=2e-20) PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Vitis vinifera];; (*ITAG) Solyc03g097000.2.1 (e_value=4e-28) genomic_reference:SL2.40ch03 gene_region:52806728-52813048 transcript_region:SL2.40ch03:52806728..52813048+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M672_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00005623g0001.1 protein ; (*GB) gi|358349430|ref|XP_003638740.1| (e_value=5e-31) hypothetical protein MTR_142s1012 [Medicago truncatula];; (*TAIR) AT3G50370.1 (e_value=4e-26) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | chr3:18676436-18683863 REVERSE LENGTH=2156;; (*ITAG) Solyc02g090760.2.1 (e_value=1e-39) genomic_reference:SL2.40ch02 gene_region:46848209-46856961 transcript_region:SL2.40ch02:46848209..46856961+ functional_description:"Os03g0395600 protein (Fragment) (AHRD V1 *-*- Q0DRD1_ORYSJ)"; NbS00038064g0001.1 protein ; (*GB) gi|357489857|ref|XP_003615216.1| (e_value=7e-17) Lysine-specific demethylase 3A [Medicago truncatula]; NbS00006279g0001.1 protein NbS00020485g0008.1 protein NbS00024078g0001.1 protein NbS00054176g0004.1 protein NbS00012216g0001.1 protein NbS00021444g0002.1 protein NbS00010573g0001.1 protein NbS00004934g0001.1 protein NbS00054802g0003.1 protein NbS00018685g0010.1 protein NbS00025367g0004.1 protein ; (*GB) gi|356511480|ref|XP_003524454.1| (e_value=4e-27) PREDICTED: two-component response regulator-like APRR2-like [Glycine max];; (*SWP) sp|Q6LA43|APRR2_ARATH (e_value=7e-15) Two-component response regulator-like APRR2 OS=Arabidopsis thaliana GN=APRR2 PE=2 SV=2;; (*TAIR) AT4G18020.5 (e_value=5e-16) | Symbols: | CheY-like two-component responsive regulator family protein | chr4:10003991-10006682 REVERSE LENGTH=487;; (*ITAG) Solyc06g061030.2.1 (e_value=3e-44) genomic_reference:SL2.40ch06 gene_region:35458941-35463705 transcript_region:SL2.40ch06:35458941..35463705+ go_terms:GO:0003700 functional_description:"Two-component response regulator ARR11 (AHRD V1 *-*- B6UC09_MAIZE); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0003700 NbS00025367g0008.1 protein ; (*ITAG) Solyc07g053800.2.1 (e_value=8e-15) genomic_reference:SL2.40ch07 gene_region:59538571-59545480 transcript_region:SL2.40ch07:59538571..59545480- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RING1 (AHRD V1 *--- B0WQV3_CULQU); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00017546g0004.1 protein NbS00011781g0005.1 protein NbS00011781g0007.1 protein NbS00002839g0006.1 protein NbS00004498g0013.1 protein ; (*ITAG) Solyc06g070960.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:39966763-39972188 transcript_region:SL2.40ch06:39966763..39972188+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter sub-family A member 14 (AHRD V1 ***- Q6XBG3_MOUSE); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0042626 NbS00004498g0016.1 protein NbS00004498g0010.1 protein NbS00012441g0004.1 protein ; (*GB) gi|356496332|ref|XP_003517022.1| (e_value=3e-15) PREDICTED: vesicle-associated protein 1-2-like [Glycine max];; (*ITAG) Solyc10g018350.1.1 (e_value=1e-11) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:7367508-7373994 transcript_region:SL2.40ch10:7367508..7373994- go_terms:GO:0005515 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 ***- Q1ANA7_WHEAT); contains Interpro domain(s) IPR016763 Vesicle-associated membrane protein "; GO:0005515 NbS00023565g0002.1 protein NbS00028026g0001.1 protein NbS00032836g0003.1 protein ; (*ITAG) Solyc10g076330.1.1 (e_value=9e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58574547-58578026 transcript_region:SL2.40ch10:58574547..58578026+ functional_description:"Kelch-like protein (AHRD V1 ***- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00032836g0005.1 protein NbS00058751g0002.1 protein NbS00009281g0002.1 protein NbS00000518g0005.1 protein NbS00015819g0004.1 protein NbS00015819g0005.1 protein NbS00037317g0005.1 protein NbS00044276g0003.1 protein NbS00011352g0003.1 protein NbS00020606g0002.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=9e-46) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=7e-39) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=6e-40) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=5e-48) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbS00018458g0005.1 protein NbS00029997g0001.1 protein NbS00001740g0002.1 protein NbS00027602g0001.1 protein NbS00029847g0003.1 protein NbS00038818g0002.1 protein NbC26073808g0002.1 protein NbS00016261g0003.1 protein NbS00016261g0005.1 protein NbS00056913g0003.1 protein NbS00001425g0008.1 protein NbS00051951g0002.1 protein ; (*GB) gi|125860394|ref|YP_001036293.1| (e_value=2e-26) ORF3 protein [Dioscorea bacilliform virus];; (*SWP) sp|P19199|POL_COYMV (e_value=2e-20) Polyprotein P3 OS=Commelina yellow mottle virus PE=3 SV=2; NbS00022056g0004.1 protein NbS00023856g0004.1 protein ; (*ITAG) Solyc02g085720.1.1 (e_value=5e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:43105031-43106152 transcript_region:SL2.40ch02:43105031..43106152+ go_terms:GO:0004311 functional_description:"Geranylgeranyl pyrophosphate synthase (AHRD V1 ***- Q9SSU0_9ROSI); contains Interpro domain(s) IPR000092 Polyprenyl synthetase "; GO:0004311 NbS00023856g0006.1 protein NbS00026892g0003.1 protein NbS00010372g0107.1 protein NbS00010372g0108.1 protein NbS00016273g0011.1 protein NbS00057968g0004.1 protein NbC26176503g0002.1 protein NbS00027996g0003.1 protein ; (*GB) gi|224123496|ref|XP_002319092.1| (e_value=6e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT1G08730.1 (e_value=2e-19) | Symbols: XIC, ATXIC | Myosin family protein with Dil domain | chr1:2779963-2788325 FORWARD LENGTH=1538;; (*ITAG) Solyc11g006220.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:959156-972148 transcript_region:SL2.40ch11:959156..972148- go_terms:GO:0016459 functional_description:"Myosin XI (AHRD V1 ***- Q5R216_TOBAC); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0016459 NbS00022648g0103.1 protein NbS00022648g0104.1 protein NbS00022648g0105.1 protein NbS00022648g0107.1 protein NbS00022648g0202.1 protein NbS00041481g0004.1 protein NbS00016516g0003.1 protein NbS00013372g0004.1 protein NbS00002513g0007.1 protein NbS00016119g0006.1 protein NbS00019249g0004.1 protein ; (*GB) gi|225426218|ref|XP_002263667.1| (e_value=1e-26) PREDICTED: methyltransferase-like protein 17, mitochondrial [Vitis vinifera];; (*TAIR) AT1G64600.1 (e_value=1e-14) | Symbols: | methyltransferases;copper ion binding | chr1:23995996-23998625 FORWARD LENGTH=537;; (*ITAG) Solyc08g082880.2.1 (e_value=6e-39) genomic_reference:SL2.40ch08 gene_region:62705443-62710758 transcript_region:SL2.40ch08:62705443..62710758+ go_terms:GO:0006412,GO:0005507 functional_description:"Ribosomal small subunit Rsm22 (AHRD V1 *-*- D9TLZ5_CLOTS); contains Interpro domain(s) IPR015324 Ribosomal protein Rsm22, bacterial-type "; GO:0006412,GO:0005507 NbS00019249g0007.1 protein NbS00003711g0004.1 protein ; (*ITAG) Solyc06g073050.2.1 (e_value=4e-13) genomic_reference:SL2.40ch06 gene_region:41395982-41399877 transcript_region:SL2.40ch06:41395982..41399877+ go_terms:GO:0045449 functional_description:"NAC domain protein IPR003441 (AHRD V1 *-*- B9IDH0_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0045449 NbS00003711g0008.1 protein NbS00001821g0001.1 protein NbS00001821g0107.1 protein NbS00001300g0008.1 protein NbS00003881g0103.1 protein NbS00006732g0005.1 protein NbS00006732g0007.1 protein NbS00007917g0003.1 protein ; (*GB) gi|224062688|ref|XP_002300874.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g056260.2.1 (e_value=8e-30) genomic_reference:SL2.40ch07 gene_region:61413568-61439279 transcript_region:SL2.40ch07:61413568..61439279- go_terms:GO:0016757 functional_description:"Glucan synthase like 3 (AHRD V1 ***- D8R8I5_SELML); contains Interpro domain(s) IPR003440 Glycosyl transferase, family 48 "; GO:0016757 NbS00004361g0004.1 protein NbS00004361g0007.1 protein NbS00053252g0005.1 protein NbS00000834g0002.1 protein NbS00000867g0112.1 protein NbS00000867g0116.1 protein NbS00000867g0125.1 protein NbS00008173g0104.1 protein NbS00008173g0108.1 protein NbS00061758g0001.1 protein NbS00003314g0002.1 protein NbS00003314g0003.1 protein ; (*ITAG) Solyc06g049090.2.1 (e_value=1e-18) genomic_reference:SL2.40ch06 gene_region:28855711-28860815 transcript_region:SL2.40ch06:28855711..28860815- go_terms:GO:0008033 functional_description:"N2 N2-dimethylguanosine tRNA methyltransferase (AHRD V1 ***- B0C738_ACAM1); contains Interpro domain(s) IPR002905 N2,N2-dimethylguanosine tRNA methyltransferase "; GO:0008033 NbS00003314g0004.1 protein NbS00003314g0006.1 protein NbS00003314g0007.1 protein ; (*TAIR) AT1G59760.1 (e_value=9e-14) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=6e-15) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00003314g0008.1 protein NbS00003314g0009.1 protein NbS00004972g0004.1 protein NbS00004972g0106.1 protein NbS00018779g0004.1 protein NbS00018779g0006.1 protein NbS00018779g0007.1 protein ; (*GB) gi|55824848|gb|AAV66506.1| (e_value=3e-28) F1-ATPase alpha subunit [Plantago australis];; (*SWP) sp|P05492|ATPAM_OENBI (e_value=9e-28) ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis GN=ATPA PE=3 SV=1;; (*ITAG) ATMG01190.1 (e_value=5e-27) | Symbols: ATP1 | ATP synthase subunit 1 | chrM:302166-303689 REVERSE LENGTH=507;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00000297g0009.1 protein NbS00014268g0003.1 protein ; (*TAIR) AT1G12840.1 (e_value=5e-14) | Symbols: DET3, ATVHA-C | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375;; (*ITAG) Solyc03g097790.2.1 (e_value=8e-18) genomic_reference:SL2.40ch03 gene_region:53564540-53576586 transcript_region:SL2.40ch03:53564540..53576586+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit C (AHRD V1 **** VATC_ARATH); contains Interpro domain(s) IPR004907 ATPase, V1 complex, subunit C "; GO:0005515,GO:0046961 NbS00032106g0003.1 protein NbS00032106g0006.1 protein NbS00000105g0003.1 protein NbS00032261g0003.1 protein ; (*GB) gi|357466705|ref|XP_003603637.1| (e_value=7e-33) Monoglyceride lipase [Medicago truncatula];; (*TAIR) AT5G11650.1 (e_value=2e-31) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr5:3745069-3746816 FORWARD LENGTH=390;; (*ITAG) Solyc08g066440.2.1 (e_value=2e-38) genomic_reference:SL2.40ch08 gene_region:52277630-52281785 transcript_region:SL2.40ch08:52277630..52281785- go_terms:GO:0004622 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7KRI7_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0004622 NbS00017738g0001.1 protein ; (*GB) gi|255571740|ref|XP_002526813.1| (e_value=9e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G35660.1 (e_value=6e-27) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:13192743-13197655 FORWARD LENGTH=1405;; (*ITAG) Solyc06g065360.2.1 (e_value=3e-42) genomic_reference:SL2.40ch06 gene_region:37177694-37184339 transcript_region:SL2.40ch06:37177694..37184339+ functional_description:"Erythroid differentiation-related factor 1-like protein (AHRD V1 ***- Q5N730_ORYSJ)"; NbS00013414g0003.1 protein NbS00050894g0004.1 protein ; (*GB) gi|297737325|emb|CBI26526.3| (e_value=4e-77) unnamed protein product [Vitis vinifera];; (*SWP) sp|O04647|PP399_ARATH (e_value=3e-72) Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2;; (*TAIR) AT5G27270.1 (e_value=3e-73) | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:9605650-9609625 FORWARD LENGTH=1038;; (*ITAG) Solyc03g097000.2.1 (e_value=1e-102) genomic_reference:SL2.40ch03 gene_region:52806728-52813048 transcript_region:SL2.40ch03:52806728..52813048+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M672_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00048643g0002.1 protein ; (*GB) gi|255566034|ref|XP_002524005.1| (e_value=2e-41) hypothetical protein RCOM_1516730 [Ricinus communis];; (*TAIR) AT3G03560.1 (e_value=9e-43) | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:853153-856486 REVERSE LENGTH=521;; (*ITAG) Solyc02g063050.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:29660810-29673796 transcript_region:SL2.40ch02:29660810..29673796+ functional_description:"Os05g0100900 protein (Fragment) (AHRD V1 *-*- Q0DLI2_ORYSJ)"; NbS00048643g0004.1 protein NbS00028549g0013.1 protein NbS00028549g0014.1 protein NbS00059238g0002.1 protein NbS00002059g0010.1 protein NbS00014789g0003.1 protein ; (*GB) gi|83283981|gb|ABC01898.1| (e_value=2e-26) mitochondrial carrier-like protein [Solanum tuberosum];; (*TAIR) AT4G01100.2 (e_value=4e-23) | Symbols: ADNT1 | adenine nucleotide transporter 1 | chr4:477411-479590 FORWARD LENGTH=366;; (*ITAG) Solyc01g095570.2.1 (e_value=4e-30) genomic_reference:SL2.40ch01 gene_region:78536531-78541575 transcript_region:SL2.40ch01:78536531..78541575- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00014789g0004.1 protein ; (*GB) gi|83283981|gb|ABC01898.1| (e_value=8e-23) mitochondrial carrier-like protein [Solanum tuberosum];; (*ITAG) Solyc01g095570.2.1 (e_value=3e-27) genomic_reference:SL2.40ch01 gene_region:78536531-78541575 transcript_region:SL2.40ch01:78536531..78541575- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier-like protein (AHRD V1 ***- Q2PYY0_SOLTU); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00009530g0005.1 protein NbS00046262g0001.1 protein NbS00047653g0003.1 protein NbS00043412g0001.1 protein NbS00019252g0004.1 protein NbS00008474g0002.1 protein ; (*GB) gi|224126487|ref|XP_002319850.1| (e_value=5e-15) predicted protein [Populus trichocarpa]; NbS00041129g0003.1 protein NbS00004038g0013.1 protein ; (*GB) gi|48057665|gb|AAT39964.1| (e_value=3e-14) Putative gag polyprotein, identical [Solanum demissum]; NbS00009059g0010.1 protein NbS00002522g0003.1 protein NbS00004082g0001.1 protein NbS00004082g0002.1 protein NbS00019363g0003.1 protein NbS00011777g0001.1 protein ; (*ITAG) Solyc02g086750.1.1 (e_value=5e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00000974g0003.1 protein ; (*ITAG) Solyc02g090930.2.1 (e_value=4e-25) genomic_reference:SL2.40ch02 gene_region:46976392-46980803 transcript_region:SL2.40ch02:46976392..46980803- go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00009112g0005.1 protein NbS00016997g0003.1 protein ; (*ITAG) Solyc08g014370.1.1 (e_value=9e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:4193749-4195350 transcript_region:SL2.40ch08:4193749..4195350+ go_terms:GO:0008270 functional_description:"CHP-rich zinc finger protein-like (AHRD V1 *--- Q9FNE5_ARATH); contains Interpro domain(s) IPR011424 C1-like "; GO:0008270 NbS00013926g0004.1 protein NbS00013926g0104.1 protein NbS00036175g0003.1 protein NbS00001965g0006.1 protein NbS00001965g0007.1 protein NbS00001965g0008.1 protein NbS00037198g0009.1 protein NbS00049582g0001.1 protein ; (*GB) gi|297746453|emb|CBI16509.3| (e_value=3e-20) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LJD7|COP10_ARATH (e_value=5e-22) Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1;; (*TAIR) AT3G13550.2 (e_value=3e-23) | Symbols: FUS9, EMB144, COP10, CIN4 | Ubiquitin-conjugating enzyme family protein | chr3:4423828-4424797 REVERSE LENGTH=170;; (*ITAG) Solyc01g005840.2.1 (e_value=9e-23) genomic_reference:SL2.40ch01 gene_region:571846-574849 transcript_region:SL2.40ch01:571846..574849+ go_terms:GO:0042296,GO:0004842 functional_description:"Ubiquitin-conjugating enzyme E2 E3 (AHRD V1 **** B6T544_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0042296,GO:0004842 NbS00005131g0105.1 protein NbS00005131g0207.1 protein NbS00012528g0006.1 protein NbS00012528g0112.1 protein NbS00012528g0113.1 protein NbS00012528g0114.1 protein NbS00012528g0115.1 protein NbS00012528g0109.1 protein NbS00009555g0005.1 protein NbS00003223g0005.1 protein NbS00003223g0006.1 protein NbS00034931g0002.1 protein NbS00005879g0102.1 protein NbC23542804g0001.1 protein ; (*GB) gi|255572860|ref|XP_002527362.1| (e_value=2e-31) E3 ubiquitin protein ligase upl2, putative [Ricinus communis];; (*ITAG) Solyc04g076620.2.1 (e_value=2e-39) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00048574g0002.1 protein NbS00011873g0002.1 protein NbS00056630g0003.1 protein NbS00055535g0001.1 protein ; (*GB) gi|147816091|emb|CAN72890.1| (e_value=5e-33) hypothetical protein VITISV_022310 [Vitis vinifera];; (*SWP) sp|Q9SU29|UPL5_ARATH (e_value=6e-26) E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1;; (*TAIR) AT4G12570.1 (e_value=5e-27) | Symbols: UPL5 | ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873;; (*ITAG) Solyc05g054080.2.1 (e_value=8e-41) genomic_reference:SL2.40ch05 gene_region:63202932-63210766 transcript_region:SL2.40ch05:63202932..63210766+ go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase E3 (AHRD V1 *-** B6K793_SCHJY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00027106g0004.1 protein NbS00027106g0006.1 protein NbC23418517g0001.1 protein ; (*GB) gi|255550664|ref|XP_002516381.1| (e_value=1e-27) Carboxy-terminal kinesin, putative [Ricinus communis];; (*TAIR) AT3G23670.1 (e_value=1e-26) | Symbols: PAKRP1L, KINESIN-12B | phragmoplast-associated kinesin-related protein, putative | chr3:8519290-8525055 FORWARD LENGTH=1313;; (*ITAG) Solyc09g097860.2.1 (e_value=3e-26) genomic_reference:SL2.40ch09 gene_region:67119883-67128642 transcript_region:SL2.40ch09:67119883..67128642+ go_terms:GO:0008574 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9LUG0_ARATH); contains Interpro domain(s) IPR010544 Kinesin-related "; GO:0008574 NbS00000687g0006.1 protein NbS00044768g0002.1 protein ; (*GB) gi|225450630|ref|XP_002278172.1| (e_value=4e-147) PREDICTED: pentatricopeptide repeat-containing protein At5g16420, mitochondrial [Vitis vinifera];; (*SWP) sp|Q9FFE3|PP388_ARATH (e_value=1e-129) Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1;; (*TAIR) AT5G16420.1 (e_value=1e-130) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:5368034-5369641 FORWARD LENGTH=535;; (*ITAG) Solyc01g096210.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79064695-79068628 transcript_region:SL2.40ch01:79064695..79068628- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M846_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00042881g0006.1 protein NbS00003786g0003.1 protein ; (*GB) gi|300680945|sp|B5WWZ9.1|FAO2_LOTJA (e_value=2e-19) RecName: Full=Long-chain-alcohol oxidase FAO2; AltName: Full=Long-chain fatty alcohol oxidase 2;; (*SWP) sp|B5WWZ9|FAO2_LOTJA (e_value=5e-21) Long-chain-alcohol oxidase FAO2 OS=Lotus japonicus GN=FAO2 PE=2 SV=1;; (*TAIR) AT1G03990.1 (e_value=4e-14) | Symbols: | Long-chain fatty alcohol dehydrogenase family protein | chr1:1024847-1027616 FORWARD LENGTH=758;; (*ITAG) Solyc09g072610.2.1 (e_value=5e-26) genomic_reference:SL2.40ch09 gene_region:60713774-60717099 transcript_region:SL2.40ch09:60713774..60717099- go_terms:GO:0016614,GO:0050660,GO:0055114 functional_description:"Glucose-methanol-choline oxidoreductase (AHRD V1 ***- D6TF66_9CHLR); contains Interpro domain(s) IPR012400 Long-chain fatty alcohol dehydrogenase "; GO:0016614,GO:0050660,GO:0055114 NbS00039048g0001.1 protein ; (*GB) gi|255548610|ref|XP_002515361.1| (e_value=1e-24) cytochrome P450, putative [Ricinus communis];; (*TAIR) AT5G24910.1 (e_value=8e-20) | Symbols: CYP714A1 | cytochrome P450, family 714, subfamily A, polypeptide 1 | chr5:8567674-8570260 REVERSE LENGTH=532;; (*ITAG) Solyc03g095310.2.1 (e_value=3e-32) genomic_reference:SL2.40ch03 gene_region:49777121-49783215 transcript_region:SL2.40ch03:49777121..49783215- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00032320g0002.1 protein NbS00007180g0002.1 protein NbS00007180g0003.1 protein NbC23940831g0001.1 protein ; (*GB) gi|359492508|ref|XP_002283711.2| (e_value=1e-30) PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Vitis vinifera];; (*ITAG) Solyc04g076620.2.1 (e_value=1e-41) genomic_reference:SL2.40ch04 gene_region:59096573-59114374 transcript_region:SL2.40ch04:59096573..59114374- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase 1 (AHRD V1 *-** D7KN29_ARALY); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00017288g0003.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-22) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00015593g0005.1 protein NbS00015593g0007.1 protein NbS00015476g0018.1 protein NbS00015476g0019.1 protein NbS00015476g0021.1 protein NbS00038456g0003.1 protein NbS00025779g0014.1 protein NbS00025779g0009.1 protein NbS00016968g0005.1 protein NbS00016968g0007.1 protein NbS00016968g0008.1 protein NbS00001571g0002.1 protein NbS00038245g0006.1 protein NbS00029200g0002.1 protein NbS00010943g0011.1 protein ; (*GB) gi|359494546|ref|XP_003634802.1| (e_value=6e-34) PREDICTED: uncharacterized protein LOC100259488 [Vitis vinifera];; (*TAIR) AT5G45540.1 (e_value=2e-25) | Symbols: | Protein of unknown function (DUF594) | chr5:18458294-18460705 REVERSE LENGTH=803;; (*ITAG) Solyc12g094650.1.1 (e_value=3e-29) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00010943g0007.1 protein ; (*GB) gi|356538242|ref|XP_003537613.1| (e_value=3e-40) PREDICTED: disease resistance RPP8-like protein 3-like [Glycine max];; (*SWP) sp|Q39214|RPM1_ARATH (e_value=2e-31) Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1;; (*TAIR) AT3G07040.1 (e_value=1e-32) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926;; (*ITAG) Solyc08g005440.2.1 (e_value=6e-34) genomic_reference:SL2.40ch08 gene_region:324852-328029 transcript_region:SL2.40ch08:324852..328029+ go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00010943g0009.1 protein NbS00022525g0104.1 protein NbS00022525g0109.1 protein NbS00047105g0001.1 protein NbS00047330g0002.1 protein NbS00047330g0103.1 protein NbS00018558g0002.1 protein NbC25648345g0002.1 protein ; (*GB) gi|224133038|ref|XP_002327946.1| (e_value=1e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|O49339|PTI12_ARATH (e_value=7e-38) PTI1-like tyrosine-protein kinase 2 OS=Arabidopsis thaliana GN=PTI12 PE=1 SV=1;; (*TAIR) AT2G30740.1 (e_value=5e-39) | Symbols: | Protein kinase superfamily protein | chr2:13096399-13098285 FORWARD LENGTH=366;; (*ITAG) Solyc12g098820.1.1 (e_value=1e-39) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64535368-64540452 transcript_region:SL2.40ch12:64535368..64540452+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- A7VM24_MARPO); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00007201g0009.1 protein NbS00014723g0012.1 protein NbS00014723g0014.1 protein ; (*ITAG) Solyc05g041970.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:53520609-53521281 transcript_region:SL2.40ch05:53520609..53521281- functional_description:"Unknown Protein (AHRD V1)"; NbS00014723g0008.1 protein NbS00026785g0002.1 protein ; (*GB) gi|225438954|ref|XP_002284222.1| (e_value=1e-129) PREDICTED: uncharacterized protein LOC100254381 [Vitis vinifera];; (*TAIR) AT4G37510.1 (e_value=2e-131) | Symbols: | Ribonuclease III family protein | chr4:17626259-17628854 REVERSE LENGTH=537;; (*ITAG) Solyc10g080040.1.1 (e_value=2e-142) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60770753-60775222 transcript_region:SL2.40ch10:60770753..60775222- go_terms:GO:0006396 functional_description:"Ribonuclease 3 (AHRD V1 *-*- C3BNS5_9BACI); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00026785g0003.1 protein ; (*GB) gi|255584888|ref|XP_002533159.1| (e_value=3e-26) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G37510.1 (e_value=9e-26) | Symbols: | Ribonuclease III family protein | chr4:17626259-17628854 REVERSE LENGTH=537;; (*ITAG) Solyc10g080040.1.1 (e_value=9e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60770753-60775222 transcript_region:SL2.40ch10:60770753..60775222- go_terms:GO:0006396 functional_description:"Ribonuclease 3 (AHRD V1 *-*- C3BNS5_9BACI); contains Interpro domain(s) IPR000999 Ribonuclease III "; GO:0006396 NbS00060907g0002.1 protein NbS00051991g0003.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=8e-27) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00023242g0005.1 protein NbS00023242g0008.1 protein ; (*GB) gi|225448406|ref|XP_002271517.1| (e_value=6e-16) PREDICTED: uncharacterized protein LOC100265724 [Vitis vinifera];; (*ITAG) Solyc11g008130.1.1 (e_value=2e-35) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2328246-2330208 transcript_region:SL2.40ch11:2328246..2330208+ functional_description:"Nuclear pore complex protein-related protein (Fragment) (AHRD V1 ***- Q45NJ5_MEDSA)"; NbS00020757g0006.1 protein NbS00031559g0007.1 protein NbS00031559g0008.1 protein NbS00046285g0003.1 protein NbS00014670g0001.1 protein NbS00008458g0014.1 protein NbS00008458g0015.1 protein ; (*GB) gi|296082580|emb|CBI21585.3| (e_value=2e-17) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9STS3|CDC23_ARATH (e_value=1e-13) Anaphase-promoting complex subunit 8 OS=Arabidopsis thaliana GN=APC8 PE=1 SV=1;; (*TAIR) AT3G48150.1 (e_value=8e-15) | Symbols: APC8, CDC23 | anaphase-promoting complex subunit 8 | chr3:17779800-17782565 REVERSE LENGTH=579;; (*ITAG) Solyc03g113740.2.1 (e_value=1e-21) genomic_reference:SL2.40ch03 gene_region:57845637-57851848 transcript_region:SL2.40ch03:57845637..57851848- go_terms:GO:0005515,GO:0004842 functional_description:"Anaphase promoting complex subunit 8/cell division cycle protein 23-like protein (Fragment) (AHRD V1 **-- Q5SC97_OSTTA); contains Interpro domain(s) IPR007192 Cdc23 "; GO:0005515,GO:0004842 NbS00008458g0026.1 protein NbS00008458g0027.1 protein NbS00052125g0004.1 protein NbS00052125g0007.1 protein NbS00019898g0004.1 protein ; (*ITAG) Solyc01g044360.2.1 (e_value=3e-14) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00040567g0004.1 protein ; (*ITAG) Solyc02g089610.1.1 (e_value=5e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:45946477-45947565 transcript_region:SL2.40ch02:45946477..45947565- go_terms:GO:0004014 functional_description:"S-adenosylmethionine decarboxylase proenzyme (AHRD V1 **** Q7XZQ9_VITVI); contains Interpro domain(s) IPR001985 S-adenosylmethionine decarboxylase "; GO:0004014 NbS00002179g0004.1 protein NbS00002179g0005.1 protein NbS00002179g0102.1 protein NbS00002179g0201.1 protein NbS00009341g0002.1 protein NbS00009341g0005.1 protein NbS00010982g0105.1 protein NbS00010982g0106.1 protein NbS00010982g0107.1 protein NbS00005293g0003.1 protein NbS00005293g0006.1 protein NbS00015162g0009.1 protein NbC24565376g0001.1 protein ; (*GB) gi|359484307|ref|XP_002279505.2| (e_value=5e-27) PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9FYT6|CRS1_MAIZE (e_value=5e-21) Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1;; (*TAIR) AT4G29750.1 (e_value=6e-27) | Symbols: | CRS1 / YhbY (CRM) domain-containing protein | chr4:14569728-14572962 FORWARD LENGTH=841;; (*ITAG) Solyc07g039500.2.1 (e_value=8e-34) genomic_reference:SL2.40ch07 gene_region:44930650-44935280 transcript_region:SL2.40ch07:44930650..44935280+ go_terms:GO:0003723 functional_description:"Group II intron splicing factor CRS1-like (AHRD V1 *--- Q5JK64_ORYSJ); contains Interpro domain(s) IPR001890 RNA-binding, CRM domain "; GO:0003723 NbS00031330g0010.1 protein NbS00036773g0002.1 protein NbS00010686g0019.1 protein ; (*ITAG) Solyc04g016540.1.1 (e_value=5e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:7366644-7369208 transcript_region:SL2.40ch04:7366644..7369208- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LD67_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00000344g0003.1 protein NbS00000344g0005.1 protein NbS00008322g0005.1 protein NbS00057822g0002.1 protein ; (*GB) gi|147853036|emb|CAN82760.1| (e_value=3e-24) hypothetical protein VITISV_018106 [Vitis vinifera];; (*SWP) sp|O82392|THIC_ARATH (e_value=3e-25) Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana GN=THIC PE=1 SV=1;; (*TAIR) AT2G29630.3 (e_value=3e-26) | Symbols: THIC | thiaminC | chr2:12667395-12669569 FORWARD LENGTH=644;; (*ITAG) Solyc06g006080.2.1 (e_value=2e-26) genomic_reference:SL2.40ch06 gene_region:1109115-1112713 transcript_region:SL2.40ch06:1109115..1112713+ go_terms:GO:0051536,GO:0080041 functional_description:"Phosphomethylpyrimidine synthase (AHRD V1 ***- C7MPZ7_SACVD); contains Interpro domain(s) IPR002817 Thiamine biosynthesis protein ThiC "; GO:0051536,GO:0080041 NbS00038884g0003.1 protein NbS00011068g0002.1 protein NbC24315801g0001.1 protein ; (*GB) gi|255565711|ref|XP_002523845.1| (e_value=6e-22) Nicalin precursor, putative [Ricinus communis];; (*TAIR) AT3G44330.1 (e_value=2e-21) | Symbols: | INVOLVED IN: protein processing; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicalin (InterPro:IPR016574), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Nicastrin (InterPro:IPR008710); Has 245 Blast hits to 243 proteins in 99 species: Archae - 6; Bacteria - 10; Metazoa - 139; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr3:16006754-16010671 FORWARD LENGTH=565;; (*ITAG) Solyc11g068670.1.1 (e_value=9e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50388348-50398336 transcript_region:SL2.40ch11:50388348..50398336- go_terms:GO:0016021 functional_description:"Nicalin (AHRD V1 ***- B4FZF8_MAIZE); contains Interpro domain(s) IPR008710 Nicastrin "; GO:0016021 NbS00020676g0005.1 protein NbS00012258g0003.1 protein NbS00009113g0005.1 protein NbS00058662g0003.1 protein NbS00058662g0005.1 protein NbS00005033g0007.1 protein NbS00010924g0003.1 protein NbS00010924g0007.1 protein NbS00013508g0007.1 protein NbS00013508g0009.1 protein NbS00016089g0003.1 protein NbS00012942g0001.1 protein NbS00017537g0006.1 protein NbS00011916g0003.1 protein NbS00029367g0005.1 protein NbS00002845g0013.1 protein NbS00002845g0007.1 protein NbS00061699g0003.1 protein NbS00009762g0007.1 protein ; (*ITAG) Solyc01g079350.2.1 (e_value=2e-18) genomic_reference:SL2.40ch01 gene_region:70955389-70958207 transcript_region:SL2.40ch01:70955389..70958207+ go_terms:GO:0005515 functional_description:"PAPA-1-like conserved region family protein expressed (AHRD V1 *-*- Q2QNL7_ORYSJ); contains Interpro domain(s) IPR006880 PAPA-1-like conserved region "; GO:0005515 NbS00009762g0010.1 protein NbS00007067g0107.1 protein NbS00007067g0108.1 protein NbS00020251g0007.1 protein NbS00033089g0004.1 protein NbS00057395g0002.1 protein NbS00004547g0009.1 protein NbS00005004g0002.1 protein NbS00033026g0008.1 protein NbS00058912g0001.1 protein NbS00002447g0011.1 protein NbS00015076g0001.1 protein ; (*ITAG) Solyc04g011530.2.1 (e_value=6e-35) genomic_reference:SL2.40ch04 gene_region:3961600-3968559 transcript_region:SL2.40ch04:3961600..3968559+ functional_description:"Os04g0129600 protein (Fragment) (AHRD V1 ***- Q0JF81_ORYSJ)"; NbS00039716g0003.1 protein NbS00039716g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-14) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00014574g0010.1 protein NbS00024917g0001.1 protein NbS00024917g0002.1 protein NbS00024917g0003.1 protein NbS00044447g0005.1 protein NbS00038463g0003.1 protein NbS00030909g0002.1 protein NbS00001700g0009.1 protein NbS00013850g0004.1 protein NbS00044596g0002.1 protein ; (*ITAG) Solyc12g019130.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:9244294-9245985 transcript_region:SL2.40ch12:9244294..9245985- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q68UW1_PYRCO); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00000014g0001.1 protein ; (*ITAG) Solyc03g044840.1.1 (e_value=2e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:14612620-14618579 transcript_region:SL2.40ch03:14612620..14618579- functional_description:"Helicase-like protein (AHRD V1 *-*- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00000014g0002.1 protein NbS00023169g0004.1 protein NbS00032751g0013.1 protein NbS00032751g0016.1 protein NbS00032751g0019.1 protein NbS00028395g0002.1 protein NbS00030668g0004.1 protein ; (*GB) gi|297738122|emb|CBI27323.3| (e_value=3e-35) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G69070.1 (e_value=1e-30) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). | chr1:25967421-25971389 REVERSE LENGTH=901;; (*ITAG) Solyc05g011990.2.1 (e_value=1e-46) genomic_reference:SL2.40ch05 gene_region:5194960-5203690 transcript_region:SL2.40ch05:5194960..5203690- go_terms:GO:0030515,GO:0005515 functional_description:"Nucleolar protein 14 (AHRD V1 *--- A8NZ00_COPC7); contains Interpro domain(s) IPR007276 Nop14-like protein "; GO:0030515,GO:0005515 NbC24306440g0001.1 protein ; (*GB) gi|359806525|ref|NP_001241003.1| (e_value=7e-19) mitogen-activated protein kinase kinase kinase 2-like [Glycine max];; (*TAIR) AT5G67080.1 (e_value=9e-19) | Symbols: MAPKKK19 | mitogen-activated protein kinase kinase kinase 19 | chr5:26772726-26773760 FORWARD LENGTH=344;; (*ITAG) Solyc02g090970.1.1 (e_value=4e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:47002477-47003559 transcript_region:SL2.40ch02:47002477..47003559+ go_terms:GO:0008545 functional_description:"Serine/threonine-protein kinase 24 (AHRD V1 **** STK24_MOUSE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0008545 NbS00060526g0001.1 protein NbS00015722g0004.1 protein NbS00009161g0006.1 protein NbS00054287g0001.1 protein NbS00003189g0001.1 protein ; (*ITAG) Solyc09g090860.2.1 (e_value=3e-16) genomic_reference:SL2.40ch09 gene_region:65598396-65603568 transcript_region:SL2.40ch09:65598396..65603568- functional_description:"Sec20 family protein (AHRD V1 ***- D7L520_ARALY); contains Interpro domain(s) IPR005606 Sec20 "; NbS00031711g0003.1 protein NbS00006578g0105.1 protein NbS00006578g0109.1 protein NbS00010144g0102.1 protein NbS00010144g0103.1 protein NbS00010144g0104.1 protein NbS00010144g0106.1 protein NbS00038026g0003.1 protein NbS00007065g0006.1 protein NbS00017296g0013.1 protein NbS00027122g0005.1 protein NbS00011387g0002.1 protein ; (*GB) gi|225427155|ref|XP_002277531.1| (e_value=2e-12) PREDICTED: (R)-mandelonitrile lyase-like [Vitis vinifera];; (*TAIR) AT1G73050.1 (e_value=2e-12) | Symbols: | Glucose-methanol-choline (GMC) oxidoreductase family protein | chr1:27476565-27478534 REVERSE LENGTH=552;; (*ITAG) Solyc03g123820.1.1 (e_value=4e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:64587847-64589648 transcript_region:SL2.40ch03:64587847..64589648+ go_terms:GO:0016614,GO:0006066,GO:0050660 functional_description:"Choline dehydrogenase (AHRD V1 ***- A0QXW0_MYCS2); contains Interpro domain(s) IPR012132 Glucose-methanol-choline oxidoreductase "; GO:0016614,GO:0006066,GO:0050660 NbS00011387g0106.1 protein NbS00011387g0107.1 protein NbS00026508g0003.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00025528g0103.1 protein NbS00007930g0003.1 protein NbS00027581g0012.1 protein NbS00041415g0004.1 protein NbS00006967g0003.1 protein NbS00006967g0111.1 protein NbS00023395g0002.1 protein NbS00037858g0003.1 protein NbS00037858g0005.1 protein NbS00004717g0106.1 protein NbS00004717g0107.1 protein NbS00027195g0009.1 protein NbS00034834g0003.1 protein ; (*GB) gi|255579637|ref|XP_002530659.1| (e_value=7e-53) hypothetical protein RCOM_1388980 [Ricinus communis];; (*TAIR) AT4G17380.1 (e_value=9e-50) | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4:9708742-9714068 FORWARD LENGTH=792;; (*ITAG) Solyc08g007330.2.1 (e_value=2e-57) genomic_reference:SL2.40ch08 gene_region:1892968-1906524 transcript_region:SL2.40ch08:1892968..1906524- go_terms:GO:0005515 functional_description:"DNA mismatch repair protein mutS (AHRD V1 ***- B2W010_PYRTR); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "; GO:0005515 NbS00046584g0005.1 protein NbS00029705g0005.1 protein ; (*GB) gi|359493878|ref|XP_002281921.2| (e_value=7e-84) PREDICTED: uncharacterized protein LOC100253761 [Vitis vinifera];; (*SWP) sp|Q556Z3|TPC10_DICDI (e_value=3e-15) Trafficking protein particle complex subunit 10 OS=Dictyostelium discoideum GN=trapcc10-1 PE=3 SV=1;; (*TAIR) AT5G54440.1 (e_value=2e-82) | Symbols: CLUB, AtTRS130 | CLUB | chr5:22100056-22107695 FORWARD LENGTH=1259;; (*ITAG) Solyc07g063440.2.1 (e_value=6e-101) genomic_reference:SL2.40ch07 gene_region:63138711-63153358 transcript_region:SL2.40ch07:63138711..63153358+ functional_description:"Trafficking protein particle complex subunit 10 (AHRD V1 *--- D3BI54_POLPA)"; NbS00004615g0003.1 protein NbS00006397g0004.1 protein NbS00006397g0104.1 protein NbS00055175g0005.1 protein NbS00039438g0006.1 protein ; (*GB) gi|296086550|emb|CBI32139.3| (e_value=3e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SGH2|MBD9_ARATH (e_value=5e-34) Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1;; (*TAIR) AT3G01460.1 (e_value=4e-35) | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176;; (*ITAG) Solyc05g005640.2.1 (e_value=2e-64) genomic_reference:SL2.40ch05 gene_region:467377-478907 transcript_region:SL2.40ch05:467377..478907- go_terms:GO:0008327 functional_description:"PHD finger family protein / methyl-CpG binding domain-containing protein (ISS) (AHRD V1 *--* Q01B57_OSTTA); contains Interpro domain(s) IPR019787 Zinc finger, PHD-finger "; GO:0008327 NbS00000741g0003.1 protein NbS00000741g0006.1 protein NbS00000741g0007.1 protein ; (*ITAG) Solyc07g065430.2.1 (e_value=2e-48) genomic_reference:SL2.40ch07 gene_region:64411861-64416712 transcript_region:SL2.40ch07:64411861..64416712- go_terms:GO:0030001,GO:0005694 functional_description:"DNA topoisomerase VI subunit A (AHRD V1 *-*- D7FY71_ECTSI); contains Interpro domain(s) IPR013048 Meiotic recombination Spo11 "; GO:0030001,GO:0005694 NbS00012362g0001.1 protein ; (*GB) gi|147771667|emb|CAN71548.1| (e_value=6e-19) hypothetical protein VITISV_030233 [Vitis vinifera];; (*TAIR) AT1G05500.1 (e_value=7e-19) | Symbols: SYTE, ATSYTE, NTMC2TYPE2.1, NTMC2T2.1, SYT5 | Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:1625098-1628940 FORWARD LENGTH=560;; (*ITAG) Solyc07g007680.2.1 (e_value=6e-21) genomic_reference:SL2.40ch07 gene_region:2323848-2335317 transcript_region:SL2.40ch07:2323848..2335317- functional_description:"Plant synaptotagmin (AHRD V1 **-- B9N719_POPTR); contains Interpro domain(s) IPR018029 C2 membrane targeting protein "; NbS00007102g0013.1 protein NbS00007102g0014.1 protein NbS00025354g0002.1 protein NbS00035384g0004.1 protein NbS00018697g0003.1 protein NbS00029859g0001.1 protein NbS00029859g0002.1 protein NbS00028643g0004.1 protein NbS00028643g0007.1 protein NbS00027490g0003.1 protein NbS00027490g0006.1 protein NbS00005244g0002.1 protein NbS00035546g0001.1 protein ; (*ITAG) Solyc06g082870.2.1 (e_value=2e-14) genomic_reference:SL2.40ch06 gene_region:44805209-44808923 transcript_region:SL2.40ch06:44805209..44808923+ go_terms:GO:0005840 functional_description:"60S ribosomal protein L5-1 (AHRD V1 ***- B6THG9_MAIZE); contains Interpro domain(s) IPR005485 Ribosomal protein L5, eukaryotic "; GO:0005840 NbS00003467g0008.1 protein NbS00030907g0005.1 protein NbS00000643g0004.1 protein NbS00000643g0006.1 protein NbS00000643g0007.1 protein NbS00000854g0004.1 protein NbS00000854g0007.1 protein NbS00000854g0008.1 protein ; (*GB) gi|297737995|emb|CBI27196.3| (e_value=5e-17) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc02g031910.2.1 (e_value=4e-20) genomic_reference:SL2.40ch02 gene_region:17857085-17865021 transcript_region:SL2.40ch02:17857085..17865021- go_terms:GO:0004712 functional_description:"Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004712 NbS00022866g0304.1 protein NbS00041051g0005.1 protein ; (*GB) gi|115442283|ref|NP_001045421.1| (e_value=6e-31) Os01g0952600 [Oryza sativa Japonica Group];; (*SWP) sp|Q7MG04|BGAL_VIBVY (e_value=3e-21) Beta-galactosidase OS=Vibrio vulnificus (strain YJ016) GN=lacZ PE=3 SV=1;; (*TAIR) AT3G54440.2 (e_value=2e-30) | Symbols: | glycoside hydrolase family 2 protein | chr3:20148494-20157019 REVERSE LENGTH=1108;; (*ITAG) Solyc08g014480.2.1 (e_value=3e-35) genomic_reference:SL2.40ch08 gene_region:4483718-4509241 transcript_region:SL2.40ch08:4483718..4509241- go_terms:GO:0005515 functional_description:"Beta Galactosidase-like protein (AHRD V1 ***- Q9M1I3_ARATH); contains Interpro domain(s) IPR006103 Glycoside hydrolase family 2, TIM barrel "; GO:0005515 NbS00037611g0002.1 protein NbS00016648g0001.1 protein NbC25026452g0001.1 protein ; (*GB) gi|359474836|ref|XP_002277979.2| (e_value=5e-15) PREDICTED: translation initiation factor IF-3-like [Vitis vinifera];; (*ITAG) Solyc01g111720.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:89656389-89663337 transcript_region:SL2.40ch01:89656389..89663337- go_terms:GO:0006413 functional_description:"Translation initiation factor IF-3 (AHRD V1 *-*- D4YMH3_9MICO); contains Interpro domain(s) IPR001288 Translation initiation factor 3 "; GO:0006413 NbS00010169g0003.1 protein NbS00044384g0002.1 protein NbS00044384g0003.1 protein NbS00011455g0003.1 protein NbS00002333g0011.1 protein NbS00016746g0007.1 protein NbS00002390g0004.1 protein NbS00042648g0001.1 protein NbS00031498g0006.1 protein NbS00018198g0003.1 protein ; (*GB) gi|301153923|gb|ADK66305.1| (e_value=3e-19) gland-specific fatty acyl-CoA reductase 1 [Artemisia annua];; (*SWP) sp|Q39152|FACR1_ARATH (e_value=1e-18) Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1;; (*TAIR) AT5G22500.1 (e_value=1e-19) | Symbols: FAR1 | fatty acid reductase 1 | chr5:7470541-7473916 FORWARD LENGTH=491;; (*ITAG) Solyc01g104200.2.1 (e_value=5e-31) genomic_reference:SL2.40ch01 gene_region:84406092-84409241 transcript_region:SL2.40ch01:84406092..84409241- go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00018198g0004.1 protein NbS00011638g0004.1 protein NbS00011638g0005.1 protein NbS00011638g0112.1 protein NbS00011638g0113.1 protein NbS00011638g0107.1 protein NbS00027957g0004.1 protein ; (*ITAG) Solyc02g082400.2.1 (e_value=1e-13) genomic_reference:SL2.40ch02 gene_region:40668282-40677819 transcript_region:SL2.40ch02:40668282..40677819+ go_terms:GO:0032454,GO:0003700 functional_description:"Lysine-specific demethylase 3A (AHRD V1 *--* KDM3A_HUMAN); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0032454,GO:0003700 NbS00027957g0005.1 protein NbS00059871g0001.1 protein ; (*GB) gi|75252690|sp|Q5YLB5.1|GYRA_NICBE (e_value=1e-19) RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor;; (*SWP) sp|Q5YLB5|GYRA_NICBE (e_value=3e-21) DNA gyrase subunit A, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRA PE=2 SV=1;; (*TAIR) AT3G10690.1 (e_value=2e-17) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950;; (*ITAG) Solyc01g096900.2.1 (e_value=6e-20) genomic_reference:SL2.40ch01 gene_region:79648895-79670117 transcript_region:SL2.40ch01:79648895..79670117+ go_terms:GO:0005694 functional_description:"DNA gyrase subunit A family protein (AHRD V1 ***- D7L923_ARALY); contains Interpro domain(s) IPR005743 DNA gyrase, subunit A "; GO:0005694 NbS00010449g0006.1 protein NbS00010449g0007.1 protein NbS00014197g0003.1 protein ; (*GB) gi|255571143|ref|XP_002526522.1| (e_value=1e-14) receptor protein kinase, putative [Ricinus communis];; (*TAIR) AT5G46570.1 (e_value=2e-15) | Symbols: BSK2 | BR-signaling kinase 2 | chr5:18894687-18897198 FORWARD LENGTH=489;; (*ITAG) Solyc01g080880.2.1 (e_value=2e-20) genomic_reference:SL2.40ch01 gene_region:72704951-72712030 transcript_region:SL2.40ch01:72704951..72712030- go_terms:GO:0005515,GO:0016301 functional_description:"Receptor-like kinase (AHRD V1 **** C6ZRP5_SOYBN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0016301 NbS00003353g0009.1 protein NbC25641276g0002.1 protein ; (*GB) gi|225451725|ref|XP_002276947.1| (e_value=3e-20) PREDICTED: uncharacterized protein LOC100266999 [Vitis vinifera];; (*TAIR) AT1G74160.1 (e_value=2e-17) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). | chr1:27887164-27891151 FORWARD LENGTH=1025;; (*ITAG) Solyc02g089050.2.1 (e_value=3e-48) genomic_reference:SL2.40ch02 gene_region:45514255-45518721 transcript_region:SL2.40ch02:45514255..45518721- functional_description:"AT1G18620 protein (Fragment) (AHRD V1 *--- B9DFG2_ARATH)"; NbS00027425g0005.1 protein NbS00018238g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-17) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00018238g0002.1 protein NbS00018238g0003.1 protein NbS00010877g0006.1 protein NbS00025679g0104.1 protein NbS00007561g0003.1 protein NbC23431304g0001.1 protein ; (*ITAG) Solyc04g008700.2.1 (e_value=8e-19) genomic_reference:SL2.40ch04 gene_region:2360494-2378751 transcript_region:SL2.40ch04:2360494..2378751+ go_terms:GO:0070063 functional_description:"Pre-mRNA-processing factor 40 homolog A (AHRD V1 *--- PR40A_HUMAN); contains Interpro domain(s) IPR002713 FF domain "; GO:0070063 NbS00006675g0006.1 protein NbS00006675g0205.1 protein NbS00041081g0009.1 protein NbS00019102g0006.1 protein NbS00017192g0006.1 protein NbS00037103g0004.1 protein NbS00031570g0002.1 protein NbS00028689g0001.1 protein NbS00028689g0003.1 protein NbS00034939g0003.1 protein NbS00005619g0001.1 protein NbS00037343g0006.1 protein ; (*ITAG) Solyc11g061750.1.1 (e_value=4e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45463808-45467453 transcript_region:SL2.40ch11:45463808..45467453+ go_terms:GO:0003677,GO:0006355 functional_description:"AP2-like ethylene-responsive transcription factor At1g16060 (AHRD V1 *-*- AP2L1_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003677,GO:0006355 NbS00003651g0004.1 protein NbS00024430g0003.1 protein NbS00042527g0005.1 protein NbS00011500g0001.1 protein NbS00033831g0005.1 protein NbS00037159g0004.1 protein NbS00044245g0004.1 protein NbS00003826g0003.1 protein NbS00009487g0006.1 protein NbS00009487g0008.1 protein ; (*GB) gi|297815320|ref|XP_002875543.1| (e_value=6e-40) hypothetical protein ARALYDRAFT_323036 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G30380.1 (e_value=4e-42) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:11974424-11976571 FORWARD LENGTH=399;; (*ITAG) Solyc02g089320.2.1 (e_value=3e-62) genomic_reference:SL2.40ch02 gene_region:45756372-45760193 transcript_region:SL2.40ch02:45756372..45760193+ functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 **-- C0HAS5_SALSA)"; NbS00061570g0001.1 protein NbS00017737g0003.1 protein NbS00012652g0003.1 protein NbS00012652g0004.1 protein NbS00027282g0004.1 protein ; (*GB) gi|242065392|ref|XP_002453985.1| (e_value=3e-20) hypothetical protein SORBIDRAFT_04g022710 [Sorghum bicolor];; (*TAIR) AT3G26410.1 (e_value=1e-20) | Symbols: TRM11, AtTRM11 | methyltransferases;nucleic acid binding | chr3:9669508-9671273 REVERSE LENGTH=477;; (*ITAG) Solyc10g047120.1.1 (e_value=5e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:35318939-35325054 transcript_region:SL2.40ch10:35318939..35325054- go_terms:GO:0005515,GO:0004809 functional_description:"tRNA guanosine-2'-O-methyltransferase TRM11 homolog (AHRD V1 **** TRM11_MOUSE); contains Interpro domain(s) IPR016691 tRNA guanosine-2'-O-methyltransferase, TRM11 "; GO:0005515,GO:0004809 NbS00027282g0005.1 protein NbS00018888g0003.1 protein NbS00018888g0107.1 protein NbS00018888g0108.1 protein NbS00018888g0110.1 protein NbS00038786g0007.1 protein NbS00034954g0005.1 protein NbS00017705g0003.1 protein NbS00017705g0004.1 protein NbS00057258g0005.1 protein NbS00001317g0002.1 protein NbS00001317g0004.1 protein NbS00021903g0004.1 protein ; (*GB) gi|115450849|ref|NP_001049025.1| (e_value=4e-17) Os03g0158800 [Oryza sativa Japonica Group]; NbS00021903g0006.1 protein NbS00014106g0004.1 protein ; (*GB) gi|30013681|gb|AAP03883.1| (e_value=3e-30) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*ITAG) Solyc06g007190.2.1 (e_value=3e-25) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00011862g0005.1 protein NbS00011862g0006.1 protein NbS00011862g0008.1 protein NbS00006896g0005.1 protein NbS00006896g0006.1 protein NbS00018248g0003.1 protein NbS00016739g0005.1 protein NbS00016500g0002.1 protein NbS00016500g0004.1 protein NbS00009537g0005.1 protein NbS00003225g0001.1 protein NbS00045151g0001.1 protein ; (*GB) gi|255539318|ref|XP_002510724.1| (e_value=7e-37) copper transport protein atox1, putative [Ricinus communis];; (*TAIR) AT1G06330.1 (e_value=9e-13) | Symbols: | Heavy metal transport/detoxification superfamily protein | chr1:1931671-1932266 REVERSE LENGTH=159;; (*ITAG) Solyc08g075880.2.1 (e_value=1e-12) genomic_reference:SL2.40ch08 gene_region:57133149-57134844 transcript_region:SL2.40ch08:57133149..57134844- go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- D7LYP1_ARALY); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00000267g0003.1 protein NbS00000267g0004.1 protein NbS00035637g0004.1 protein NbS00011714g0005.1 protein ; (*GB) gi|255568179|ref|XP_002525065.1| (e_value=8e-50) protein phosphatase 2c, putative [Ricinus communis];; (*SWP) sp|Q94CL8|P2C48_ARATH (e_value=1e-43) Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1;; (*TAIR) AT3G55050.2 (e_value=8e-45) | Symbols: | Protein phosphatase 2C family protein | chr3:20400669-20401922 REVERSE LENGTH=384;; (*ITAG) Solyc05g055980.2.1 (e_value=8e-61) genomic_reference:SL2.40ch05 gene_region:64530654-64535425 transcript_region:SL2.40ch05:64530654..64535425- go_terms:GO:0008287,GO:0003824 functional_description:"Phosphatase 2C family protein (AHRD V1 ***- D7L0I6_ARALY); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0008287,GO:0003824 NbS00011714g0006.1 protein ; (*ITAG) Solyc07g047770.2.1 (e_value=2e-14) genomic_reference:SL2.40ch07 gene_region:56284194-56294427 transcript_region:SL2.40ch07:56284194..56294427- go_terms:GO:0042802,GO:0009884 functional_description:"Histidine kinase 1 (AHRD V1 ***- D9ZHC0_HYPPE); contains Interpro domain(s) IPR006189 CHASE "; GO:0042802,GO:0009884 NbS00011714g0007.1 protein NbS00004579g0002.1 protein NbS00012690g0003.1 protein NbS00004436g0003.1 protein NbS00036737g0003.1 protein NbS00036737g0004.1 protein NbS00014173g0002.1 protein NbS00012750g0004.1 protein NbS00012750g0005.1 protein NbS00006134g0005.1 protein NbS00020161g0003.1 protein NbS00020161g0005.1 protein NbS00020161g0006.1 protein NbS00000855g0001.1 protein ; (*ITAG) Solyc07g065850.2.1 (e_value=5e-25) genomic_reference:SL2.40ch07 gene_region:64670688-64674534 transcript_region:SL2.40ch07:64670688..64674534+ go_terms:GO:0042802 functional_description:"Transport protein SFT2 (AHRD V1 *--- C9SJZ4_VERA1); contains Interpro domain(s) IPR011691 SFT2-like "; GO:0042802 NbS00049501g0004.1 protein NbS00029754g0002.1 protein NbS00022621g0002.1 protein ; (*GB) gi|14280354|gb|AAK57535.1| (e_value=5e-71) branched-chain amino acid aminotransferase [Capsicum annuum];; (*SWP) sp|Q9M439|BCAT2_ARATH (e_value=5e-61) Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1;; (*TAIR) AT1G10070.3 (e_value=3e-63) | Symbols: ATBCAT-2, BCAT-2 | branched-chain amino acid transaminase 2 | chr1:3288672-3290164 FORWARD LENGTH=318;; (*ITAG) Solyc12g088220.1.1 (e_value=2e-88) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:62104278-62110185 transcript_region:SL2.40ch12:62104278..62110185+ go_terms:GO:0008152,GO:0009081 functional_description:"Branched-chain-amino-acid aminotransferase (AHRD V1 ***- Q94CF8_CAPAN); contains Interpro domain(s) IPR005786 Branched-chain amino acid aminotransferase II "; GO:0008152,GO:0009081 NbS00024576g0003.1 protein NbS00024576g0005.1 protein NbS00024576g0006.1 protein NbS00060036g0002.1 protein ; (*GB) gi|302785289|ref|XP_002974416.1| (e_value=3e-35) hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii];; (*SWP) sp|Q86AQ5|RPC1_DICDI (e_value=5e-31) DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1;; (*TAIR) AT5G60040.2 (e_value=7e-33) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=5e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00018094g0002.1 protein NbS00005824g0002.1 protein NbS00005709g0004.1 protein NbS00005709g0006.1 protein NbS00040747g0002.1 protein NbS00060934g0003.1 protein NbS00014201g0003.1 protein NbC23725186g0001.1 protein ; (*GB) gi|357933579|dbj|BAL15056.1| (e_value=9e-19) glutamate receptor 3.3 [Solanum lycopersicum];; (*ITAG) Solyc04g082610.2.1 (e_value=6e-22) genomic_reference:SL2.40ch04 gene_region:63830521-63835334 transcript_region:SL2.40ch04:63830521..63835334+ go_terms:GO:0005217 functional_description:"Glutamate-gated kainate-type ion channel receptor subunit GluR5 (AHRD V1 **** B9H686_POPTR); contains Interpro domain(s) IPR017103 Ionotropic glutamate-like receptor, plant "; GO:0005217 NbS00023386g0004.1 protein NbS00027984g0002.1 protein NbS00003549g0013.1 protein NbS00003549g0006.1 protein ; (*GB) gi|302142800|emb|CBI20095.3| (e_value=8e-41) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M2C8|PP291_ARATH (e_value=5e-13) Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1;; (*TAIR) AT1G17160.1 (e_value=5e-40) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:5867678-5869215 FORWARD LENGTH=379;; (*ITAG) Solyc07g062070.2.1 (e_value=3e-46) genomic_reference:SL2.40ch07 gene_region:62119223-62123240 transcript_region:SL2.40ch07:62119223..62123240+ go_terms:GO:0005515 functional_description:"Ribokinase (AHRD V1 ***- C5RCK9_WEIPA); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00025722g0101.1 protein NbS00008746g0003.1 protein ; (*ITAG) Solyc07g055170.1.1 (e_value=3e-11) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:60619009-60619866 transcript_region:SL2.40ch07:60619009..60619866+ go_terms:GO:0046982 functional_description:"DNA repair protein XRCC3 (AHRD V1 *-*- D0NM20_PHYIN); contains Interpro domain(s) IPR013632 Rad51, C-terminal "; GO:0046982 NbS00006464g0005.1 protein NbS00045549g0003.1 protein NbS00030364g0002.1 protein ; (*SWP) sp|Q09MC7|CCSA_CITSI (e_value=1e-14) Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1;; (*ITAG) ATCG01040.1 (e_value=1e-14) | Symbols: YCF5 | Cytochrome C assembly protein | chrC:114461-115447 FORWARD LENGTH=328;; (*ITAG) Solyc11g021210.1.1 (e_value=4e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13387102-13388041 transcript_region:SL2.40ch11:13387102..13388041+ go_terms:GO:0016020 functional_description:"Cytochrome c biogenesis protein ccsA (AHRD V1 ***- CCSA_SOLLC); contains Interpro domain(s) IPR017562 Cytochrome c-type biogenesis protein CcsA "; GO:0016020 NbS00030364g0003.1 protein NbS00030364g0004.1 protein NbS00008325g0101.1 protein NbS00000093g0007.1 protein NbS00000093g0010.1 protein NbS00007508g0006.1 protein ; (*GB) gi|109289916|gb|ABG29322.1| (e_value=1e-21) DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum bulbocastanum];; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=1e-19) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=9e-21) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=5e-24) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00007508g0008.1 protein NbS00002764g0005.1 protein NbS00053051g0001.1 protein NbS00014218g0003.1 protein ; (*GB) gi|297741512|emb|CBI32644.3| (e_value=6e-36) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G02740.1 (e_value=1e-30) | Symbols: | Ribosomal protein S24e family protein | chr5:616517-618267 FORWARD LENGTH=228;; (*ITAG) Solyc09g005930.2.1 (e_value=3e-54) genomic_reference:SL2.40ch09 gene_region:644543-650137 transcript_region:SL2.40ch09:644543..650137- functional_description:"Unknown Protein (AHRD V1)"; NbS00014218g0004.1 protein ; (*GB) gi|359481534|ref|XP_002274013.2| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100241364 [Vitis vinifera];; (*ITAG) Solyc09g005930.2.1 (e_value=5e-29) genomic_reference:SL2.40ch09 gene_region:644543-650137 transcript_region:SL2.40ch09:644543..650137- functional_description:"Unknown Protein (AHRD V1)"; NbS00014423g0105.1 protein NbS00014423g0107.1 protein NbS00025463g0008.1 protein NbS00028044g0005.1 protein NbS00012822g0007.1 protein ; (*GB) gi|156104834|dbj|BAF75824.1| (e_value=9e-32) CDK activating kinase [Nicotiana tabacum];; (*SWP) sp|P29620|CDKD1_ORYSJ (e_value=3e-30) Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1;; (*TAIR) AT1G73690.1 (e_value=4e-30) | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-dependent kinase D1;1 | chr1:27715113-27717018 FORWARD LENGTH=398;; (*ITAG) Solyc08g081280.2.1 (e_value=4e-34) genomic_reference:SL2.40ch08 gene_region:61507733-61515041 transcript_region:SL2.40ch08:61507733..61515041+ go_terms:GO:0006468 functional_description:"Cell division protein kinase 2 (AHRD V1 ***- C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbC24120808g0001.1 protein ; (*GB) gi|225444375|ref|XP_002264956.1| (e_value=6e-19) PREDICTED: pentatricopeptide repeat-containing protein At4g21170-like [Vitis vinifera];; (*SWP) sp|O49558|PP331_ARATH (e_value=9e-16) Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=2 SV=2;; (*TAIR) AT4G21170.1 (e_value=7e-17) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:11286756-11288513 REVERSE LENGTH=551;; (*ITAG) Solyc02g080170.1.1 (e_value=7e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:39049493-39051247 transcript_region:SL2.40ch02:39049493..39051247+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009163g0003.1 protein NbS00020089g0006.1 protein NbC25342301g0001.1 protein ; (*GB) gi|224107655|ref|XP_002314551.1| (e_value=4e-30) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93X68|FABG5_BRANA (e_value=8e-29) 3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1;; (*TAIR) AT1G24360.1 (e_value=3e-28) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:8640820-8643283 FORWARD LENGTH=319;; (*ITAG) Solyc06g071910.2.1 (e_value=7e-26) genomic_reference:SL2.40ch06 gene_region:40687928-40693427 transcript_region:SL2.40ch06:40687928..40693427- go_terms:GO:0048038,GO:0070402,GO:0008753 functional_description:"3-oxoacyl-reductase (AHRD V1 ***- B6THT6_MAIZE); contains Interpro domain(s) IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase "; GO:0048038,GO:0070402,GO:0008753 NbS00045105g0002.1 protein NbS00016627g0010.1 protein NbS00026498g0004.1 protein NbS00020489g0004.1 protein NbS00033383g0006.1 protein ; (*TAIR) AT4G18140.2 (e_value=2e-13) | Symbols: SSP4b | SCP1-like small phosphatase 4b | chr4:10046718-10049052 REVERSE LENGTH=446;; (*ITAG) Solyc02g071250.2.1 (e_value=2e-15) genomic_reference:SL2.40ch02 gene_region:35304214-35311172 transcript_region:SL2.40ch02:35304214..35311172- go_terms:GO:0016791 functional_description:"Protein phosphatase (AHRD V1 *-*- A8N6T5_COPC7); contains Interpro domain(s) IPR011948 Dullard-like phosphatase domain "; GO:0016791 NbC25215415g0002.1 protein NbS00024247g0005.1 protein ; (*GB) gi|359475867|ref|XP_003631765.1| (e_value=6e-15) PREDICTED: calcium uptake protein 1, mitochondrial-like [Vitis vinifera];; (*ITAG) Solyc06g018050.2.1 (e_value=6e-24) genomic_reference:SL2.40ch06 gene_region:12748792-12756956 transcript_region:SL2.40ch06:12748792..12756956+ go_terms:GO:0005515 functional_description:"Calcium-binding mitochondrial carrier protein (AHRD V1 **-* CMC_DICDI); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005515 NbS00024247g0009.1 protein NbS00017884g0205.1 protein NbS00017884g0210.1 protein NbS00025562g0003.1 protein NbS00015419g0003.1 protein NbS00002124g0003.1 protein NbS00036995g0004.1 protein NbS00004479g0005.1 protein NbS00004479g0007.1 protein NbS00016390g0008.1 protein NbS00002592g0012.1 protein NbS00002592g0204.1 protein NbS00002592g0307.1 protein NbS00012106g0012.1 protein NbS00012106g0009.1 protein NbS00018960g0007.1 protein NbS00047296g0006.1 protein NbS00047296g0008.1 protein NbS00025400g0002.1 protein ; (*ITAG) Solyc02g086470.2.1 (e_value=2e-13) genomic_reference:SL2.40ch02 gene_region:43724456-43729361 transcript_region:SL2.40ch02:43724456..43729361+ go_terms:GO:0030674,GO:0032403 functional_description:"WD repeat protein (AHRD V1 **-- B8MBM8_TALSN); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0030674,GO:0032403 NbS00037651g0006.1 protein NbS00004968g0004.1 protein NbS00004968g0006.1 protein NbS00003670g0003.1 protein NbS00046739g0002.1 protein NbS00011276g0104.1 protein NbS00011276g0201.1 protein NbS00009218g0003.1 protein NbS00002731g0007.1 protein NbS00016223g0014.1 protein NbS00016223g0005.1 protein NbS00040874g0004.1 protein NbS00010570g0002.1 protein NbS00005433g0001.1 protein NbS00028986g0002.1 protein NbS00005869g0006.1 protein NbS00027624g0004.1 protein NbS00031815g0006.1 protein NbS00031002g0002.1 protein NbS00059260g0003.1 protein NbS00003440g0007.1 protein NbS00003440g0008.1 protein NbS00003440g0010.1 protein NbS00040169g0004.1 protein NbS00040169g0006.1 protein NbS00061416g0002.1 protein NbS00051800g0007.1 protein NbS00024853g0013.1 protein NbS00024853g0015.1 protein NbS00024853g0018.1 protein NbS00024853g0006.1 protein ; (*GB) gi|297744967|emb|CBI38559.3| (e_value=5e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G25120.1 (e_value=7e-47) | Symbols: SRS2, ATSRS2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12890694-12898309 FORWARD LENGTH=1149;; (*ITAG) Solyc03g093850.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:48970475-48976133 transcript_region:SL2.40ch03:48970475..48976133- go_terms:GO:0005515,GO:0043138 functional_description:"ATP-dependent DNA helicase (AHRD V1 **** B9DMT1_STACT); contains Interpro domain(s) IPR000212 DNA helicase, UvrD/REP type "; GO:0005515,GO:0043138 NbS00020241g0001.1 protein ; (*GB) gi|359481863|ref|XP_003632681.1| (e_value=1e-16) PREDICTED: uncharacterized protein LOC100257222 [Vitis vinifera];; (*TAIR) AT2G41960.1 (e_value=1e-11) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58050.1); Has 11991 Blast hits to 7260 proteins in 458 species: Archae - 17; Bacteria - 481; Metazoa - 5028; Fungi - 1325; Plants - 615; Viruses - 38; Other Eukaryotes - 4487 (source: NCBI BLink). | chr2:17514244-17519015 REVERSE LENGTH=1215;; (*ITAG) Solyc10g079010.1.1 (e_value=2e-54) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59981121-59989416 transcript_region:SL2.40ch10:59981121..59989416+ go_terms:GO:0006265 functional_description:"Unknown Protein (AHRD V1)"; GO:0006265 NbC23683855g0001.1 protein ; (*GB) gi|356562569|ref|XP_003549542.1| (e_value=3e-38) PREDICTED: uncharacterized protein LOC100784843 [Glycine max];; (*TAIR) AT4G30900.2 (e_value=2e-36) | Symbols: | DNAse I-like superfamily protein | chr4:15040021-15042203 FORWARD LENGTH=316;; (*ITAG) Solyc07g005610.2.1 (e_value=8e-44) genomic_reference:SL2.40ch07 gene_region:494019-496491 transcript_region:SL2.40ch07:494019..496491- functional_description:"Endonuclease/exonuclease/phosphatase family (AHRD V1 ***- B2SN06_XANOP)"; NbS00057994g0005.1 protein ; (*GB) gi|125889|sp|P15722.1|PEL59_SOLLC (e_value=4e-15) RecName: Full=Probable pectate lyase P59; Flags: Precursor;; (*SWP) sp|P15722|PLY59_SOLLC (e_value=1e-16) Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1;; (*TAIR) AT3G24670.1 (e_value=1e-15) | Symbols: | Pectin lyase-like superfamily protein | chr3:9006205-9008801 REVERSE LENGTH=440;; (*ITAG) Solyc02g087670.2.1 (e_value=2e-18) genomic_reference:SL2.40ch02 gene_region:44601349-44603342 transcript_region:SL2.40ch02:44601349..44603342+ go_terms:GO:0016829 functional_description:"Pectate lyase family protein (AHRD V1 **** D7M6R5_ARALY); contains Interpro domain(s) IPR002022 Pectate lyase/Amb allergen "; GO:0016829 NbS00009397g0007.1 protein NbS00022702g0002.1 protein NbS00056263g0001.1 protein NbS00006235g0005.1 protein NbS00006235g0006.1 protein NbS00040524g0004.1 protein NbS00038795g0002.1 protein NbS00038795g0003.1 protein ; (*GB) gi|297850556|ref|XP_002893159.1| (e_value=7e-27) electron carrier/ oxidoreductase [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G21350.2 (e_value=5e-29) | Symbols: | Thioredoxin superfamily protein | chr1:7477376-7479012 REVERSE LENGTH=225;; (*ITAG) Solyc04g064930.2.1 (e_value=4e-28) genomic_reference:SL2.40ch04 gene_region:55198897-55205258 transcript_region:SL2.40ch04:55198897..55205258+ go_terms:GO:0016491,GO:0045454 functional_description:"Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (AHRD V1 ***- D5BYP3_NITHN); contains Interpro domain(s) IPR000866 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen "; GO:0016491,GO:0045454 NbS00047986g0003.1 protein NbS00022904g0003.1 protein NbS00006725g0002.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=1e-23) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00026688g0003.1 protein ; (*GB) gi|225453098|ref|XP_002271519.1| (e_value=5e-42) PREDICTED: ell-associated factor Eaf isoform 2 [Vitis vinifera];; (*TAIR) AT1G71080.1 (e_value=1e-37) | Symbols: | RNA polymerase II transcription elongation factor | chr1:26809987-26811645 REVERSE LENGTH=326;; (*ITAG) Solyc02g091270.2.1 (e_value=5e-58) genomic_reference:SL2.40ch02 gene_region:47195986-47199820 transcript_region:SL2.40ch02:47195986..47199820+ functional_description:"ELL-associated factor 1 (AHRD V1 *-*- B0WGU2_CULQU); contains Interpro domain(s) IPR019194 ELL-associated factor "; NbS00026688g0005.1 protein NbS00008524g0008.1 protein NbS00002536g0008.1 protein ; (*GB) gi|297746466|emb|CBI16522.3| (e_value=7e-87) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G08810.1 (e_value=3e-87) | Symbols: SUB1 | calcium ion binding | chr4:5616204-5617862 REVERSE LENGTH=552;; (*ITAG) Solyc07g045210.1.1 (e_value=3e-53) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:55647405-55649153 transcript_region:SL2.40ch07:55647405..55649153- go_terms:GO:0005509 functional_description:"Unknown Protein (AHRD V1)"; GO:0005509 NbS00053886g0002.1 protein ; (*ITAG) Solyc12g005710.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:377740-379177 transcript_region:SL2.40ch12:377740..379177- go_terms:GO:0009055 functional_description:"Blue copper protein (AHRD V1 *--- B6U7P6_MAIZE); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0009055 NbS00009476g0002.1 protein ; (*GB) gi|120665|sp|P09044.1|G3PB_TOBAC (e_value=9e-31) RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic; AltName: Full=NADP-dependent glyceraldehydephosphate dehydrogenase subunit B; Flags: Precursor;; (*SWP) sp|P09044|G3PB_TOBAC (e_value=3e-32) Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1;; (*TAIR) AT1G42970.1 (e_value=2e-29) | Symbols: GAPB | glyceraldehyde-3-phosphate dehydrogenase B subunit | chr1:16127552-16129584 FORWARD LENGTH=447;; (*ITAG) Solyc04g082630.2.1 (e_value=3e-32) genomic_reference:SL2.40ch04 gene_region:63844019-63847151 transcript_region:SL2.40ch04:63844019..63847151- go_terms:GO:0004365 functional_description:"Glyceraldehyde-3-phosphate dehydrogenase B (AHRD V1 **** B4F8L7_MAIZE); contains Interpro domain(s) IPR000173 Glyceraldehyde 3-phosphate dehydrogenase "; GO:0004365 NbS00023232g0002.1 protein NbS00023232g0004.1 protein NbS00029348g0009.1 protein NbS00016637g0003.1 protein NbS00024218g0001.1 protein NbS00034659g0006.1 protein NbS00015315g0003.1 protein NbS00015315g0004.1 protein NbS00015315g0005.1 protein NbS00060563g0003.1 protein NbS00024416g0007.1 protein NbS00033693g0004.1 protein NbS00000630g0006.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-29) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbC24433002g0002.1 protein ; (*GB) gi|2493321|sp|Q40588.1|ASO_TOBAC (e_value=5e-25) RecName: Full=L-ascorbate oxidase; Short=ASO; Short=Ascorbase; Flags: Precursor;; (*SWP) sp|Q40588|ASO_TOBAC (e_value=2e-26) L-ascorbate oxidase OS=Nicotiana tabacum GN=AAO PE=2 SV=1;; (*TAIR) AT5G21105.3 (e_value=2e-23) | Symbols: | Plant L-ascorbate oxidase | chr5:7172727-7177657 FORWARD LENGTH=543;; (*ITAG) Solyc01g008830.1.1 (e_value=4e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:2854277-2862504 transcript_region:SL2.40ch01:2854277..2862504+ go_terms:GO:0005576,GO:0055114 functional_description:"L-ascorbate oxidase (AHRD V1 ***- B9HQ45_POPTR); contains Interpro domain(s) IPR017760 L-ascorbate oxidase, plants "; GO:0005576,GO:0055114 NbS00014120g0003.1 protein NbS00014120g0005.1 protein NbS00014120g0006.1 protein NbS00015071g0102.1 protein NbS00033639g0005.1 protein NbS00010048g0003.1 protein ; (*ITAG) Solyc04g078300.2.1 (e_value=7e-17) genomic_reference:SL2.40ch04 gene_region:60651560-60654995 transcript_region:SL2.40ch04:60651560..60654995+ go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00038766g0003.1 protein ; (*GB) gi|356558753|ref|XP_003547667.1| (e_value=7e-19) PREDICTED: uncharacterized protein LOC100787122 [Glycine max];; (*ITAG) Solyc11g068640.1.1 (e_value=2e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50360919-50369941 transcript_region:SL2.40ch11:50360919..50369941- go_terms:GO:0005488 functional_description:"Os11g0175900 protein (Fragment) (AHRD V1 ***- Q0IU89_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00018200g0006.1 protein ; (*GB) gi|255540077|ref|XP_002511103.1| (e_value=2e-15) phosphoprotein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q75QN6|PHS1_ARATH (e_value=3e-16) Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1;; (*TAIR) AT5G23720.1 (e_value=2e-17) | Symbols: PHS1 | dual specificity protein phosphatase family protein | chr5:7998309-8002594 FORWARD LENGTH=929;; (*ITAG) Solyc03g118350.2.1 (e_value=3e-22) genomic_reference:SL2.40ch03 gene_region:61305752-61313365 transcript_region:SL2.40ch03:61305752..61313365- go_terms:GO:0005515,GO:0004721 functional_description:"Dual specificity protein phosphatase (AHRD V1 *-** D7L3D2_ARALY); contains Interpro domain(s) IPR015275 Actin-fragmin kinase, catalytic "; GO:0005515,GO:0004721 NbS00058651g0001.1 protein ; (*ITAG) Solyc08g066690.2.1 (e_value=2e-22) genomic_reference:SL2.40ch08 gene_region:52723167-52726109 transcript_region:SL2.40ch08:52723167..52726109- go_terms:GO:0003824 functional_description:"Exostosin family protein (AHRD V1 ***- D7M9P2_ARALY); contains Interpro domain(s) IPR004263 Exostosin-like "; GO:0003824 NbS00024339g0009.1 protein NbS00061431g0002.1 protein ; (*ITAG) Solyc04g054650.1.1 (e_value=3e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52066696-52069078 transcript_region:SL2.40ch04:52066696..52069078+ go_terms:GO:0008270 functional_description:"Ring finger protein 157 (AHRD V1 *--- A2AAN9_MOUSE); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00005781g0008.1 protein NbS00014058g0007.1 protein NbS00006771g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-39) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00013315g0004.1 protein NbS00013315g0005.1 protein ; (*GB) gi|255584312|ref|XP_002532892.1| (e_value=5e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G38760.1 (e_value=3e-13) | Symbols: | Late embryogenesis abundant protein (LEA) family protein | chr5:15524249-15524743 FORWARD LENGTH=67;; (*ITAG) Solyc02g065640.2.1 (e_value=2e-23) genomic_reference:SL2.40ch02 gene_region:31376997-31378486 transcript_region:SL2.40ch02:31376997..31378486+ functional_description:"ABA-inducible protein-like protein (AHRD V1 ***- A8IXE3_BRACM)"; NbS00043191g0003.1 protein NbS00058065g0002.1 protein NbS00013020g0008.1 protein NbS00013020g0009.1 protein NbS00020909g0005.1 protein NbS00017883g0002.1 protein NbS00030511g0005.1 protein NbS00034043g0009.1 protein NbS00033474g0002.1 protein NbS00006800g0005.1 protein NbS00010438g0003.1 protein NbS00044194g0001.1 protein ; (*GB) gi|374082402|gb|AEY81371.1| (e_value=4e-22) longevity assurance protein 1-like protein [Gossypium hirsutum];; (*SWP) sp|Q9LJK3|LAG12_ARATH (e_value=7e-20) LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1;; (*TAIR) AT3G19260.1 (e_value=5e-21) | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 | chr3:6669448-6671257 REVERSE LENGTH=296;; (*ITAG) Solyc01g108230.2.1 (e_value=7e-34) genomic_reference:SL2.40ch01 gene_region:87342405-87350641 transcript_region:SL2.40ch01:87342405..87350641+ go_terms:GO:0050291 functional_description:"LAG1 longevity assurance homolog 2 (AHRD V1 **-- C1BLI2_OSMMO); contains Interpro domain(s) IPR006634 TRAM, LAG1 and CLN8 homology "; GO:0050291 NbS00008867g0001.1 protein NbS00008499g0011.1 protein NbS00008499g0013.1 protein NbS00008499g0006.1 protein NbS00008499g0007.1 protein NbS00008499g0010.1 protein NbS00035791g0006.1 protein NbS00035791g0007.1 protein NbS00014940g0011.1 protein NbS00014940g0005.1 protein NbS00051535g0004.1 protein NbS00047081g0002.1 protein NbS00043497g0003.1 protein NbS00039905g0003.1 protein NbS00036465g0001.1 protein ; (*GB) gi|225458001|ref|XP_002276294.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100250572 [Vitis vinifera];; (*TAIR) AT1G75710.1 (e_value=6e-35) | Symbols: | C2H2-like zinc finger protein | chr1:28428806-28431128 FORWARD LENGTH=462;; (*ITAG) Solyc04g081370.2.1 (e_value=2e-52) genomic_reference:SL2.40ch04 gene_region:62972909-62976305 transcript_region:SL2.40ch04:62972909..62976305+ go_terms:GO:0003700 functional_description:"Transcription factor (Fragment) (AHRD V1 *-** D6MKQ1_9ASPA); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003700 NbS00023364g0007.1 protein ; (*GB) gi|242047598|ref|XP_002461545.1| (e_value=3e-48) hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor];; (*TAIR) AT4G33840.1 (e_value=2e-43) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g106980.1.1 (e_value=3e-72) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86437864-86444498 transcript_region:SL2.40ch01:86437864..86444498- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *--- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00023006g0103.1 protein NbS00023006g0204.1 protein NbS00023006g0207.1 protein NbS00001652g0001.1 protein NbS00001533g0005.1 protein NbS00001533g0114.1 protein NbS00001533g0116.1 protein NbS00001533g0119.1 protein NbS00001533g0123.1 protein NbS00005062g0002.1 protein NbS00041525g0004.1 protein NbS00002812g0010.1 protein NbS00006465g0004.1 protein NbS00016534g0005.1 protein NbS00039223g0002.1 protein NbS00011045g0207.1 protein NbS00059152g0001.1 protein NbS00057566g0004.1 protein NbS00012986g0104.1 protein NbS00012986g0105.1 protein NbS00012986g0110.1 protein NbS00027007g0003.1 protein NbS00046897g0013.1 protein NbS00046897g0010.1 protein NbS00028581g0002.1 protein ; (*GB) gi|359489740|ref|XP_002264036.2| (e_value=1e-90) PREDICTED: exportin-2-like [Vitis vinifera];; (*SWP) sp|Q9ZPY7|XPO2_ARATH (e_value=7e-87) Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=1 SV=1;; (*TAIR) AT2G46520.1 (e_value=5e-88) | Symbols: | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative | chr2:19096867-19099785 FORWARD LENGTH=972;; (*ITAG) Solyc01g096060.2.1 (e_value=2e-112) genomic_reference:SL2.40ch01 gene_region:78920259-78923372 transcript_region:SL2.40ch01:78920259..78923372+ go_terms:GO:0008262 functional_description:"Nuclear envelope protein that mediates the nuclear export of importin alpha (Srp1p) (AHRD V1 **-* C4R5I2_PICPG); contains Interpro domain(s) IPR013713 Exportin, Cse1-like "; GO:0008262 NbS00012220g0002.1 protein ; (*GB) gi|297743976|emb|CBI36946.3| (e_value=3e-16) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G47410.1 (e_value=8e-16) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr2:19449133-19456991 FORWARD LENGTH=1520;; (*ITAG) Solyc01g079510.2.1 (e_value=1e-28) genomic_reference:SL2.40ch01 gene_region:71069631-71090760 transcript_region:SL2.40ch01:71069631..71090760+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein-like (AHRD V1 *--- Q9FGX4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00042845g0004.1 protein ; (*GB) gi|255579990|ref|XP_002530829.1| (e_value=2e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc11g056330.1.1 (e_value=2e-25) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:43098475-43099149 transcript_region:SL2.40ch11:43098475..43099149- functional_description:"Uncharacterized mitochondrial protein AtMg01010 (AHRD V1 *-*- M1010_ARATH)"; NbS00042845g0005.1 protein NbS00035287g0004.1 protein NbS00051747g0003.1 protein NbS00041405g0011.1 protein NbS00041405g0008.1 protein NbS00007411g0003.1 protein NbS00036367g0001.1 protein NbS00016303g0006.1 protein NbS00039259g0002.1 protein NbS00014824g0002.1 protein NbS00005973g0003.1 protein NbS00006473g0002.1 protein NbS00019005g0004.1 protein NbS00023762g0007.1 protein ; (*GB) gi|224108982|ref|XP_002315038.1| (e_value=7e-23) NAC domain protein, IPR003441 [Populus trichocarpa];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=1e-20) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT5G17260.1 (e_value=1e-21) | Symbols: anac086, NAC086 | NAC domain containing protein 86 | chr5:5675323-5677912 REVERSE LENGTH=476;; (*ITAG) Solyc07g063420.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:63124354-63127164 transcript_region:SL2.40ch07:63124354..63127164+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q4U0D4_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00051483g0003.1 protein NbS00045407g0002.1 protein NbS00034136g0004.1 protein NbS00011044g0009.1 protein ; (*GB) gi|225430698|ref|XP_002264115.1| (e_value=4e-16) PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Vitis vinifera];; (*SWP) sp|Q9FJZ3|MAN7_ARATH (e_value=4e-15) Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1;; (*TAIR) AT5G66460.1 (e_value=3e-16) | Symbols: MAN7, AtMAN7 | Glycosyl hydrolase superfamily protein | chr5:26538911-26540837 REVERSE LENGTH=431;; (*ITAG) Solyc02g084990.2.1 (e_value=4e-17) genomic_reference:SL2.40ch02 gene_region:42596683-42600186 transcript_region:SL2.40ch02:42596683..42600186- go_terms:GO:0005975 functional_description:"Mannan endo-1 4-beta-mannosidase (AHRD V1 ***- A8FDC6_BACP2); contains Interpro domain(s) IPR001547 Glycoside hydrolase, family 5 "; GO:0005975 NbS00016662g0002.1 protein NbS00016662g0004.1 protein NbS00012354g0002.1 protein NbS00030877g0004.1 protein NbS00045571g0008.1 protein NbS00045571g0009.1 protein NbS00018705g0014.1 protein NbS00018705g0015.1 protein NbS00018705g0021.1 protein NbS00018705g0010.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-19) RNase H family protein [Solanum demissum];; (*ITAG) Solyc06g033980.2.1 (e_value=1e-15) genomic_reference:SL2.40ch06 gene_region:20163363-20164580 transcript_region:SL2.40ch06:20163363..20164580+ go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HUA4_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00017812g0009.1 protein NbS00017812g0010.1 protein NbS00045194g0001.1 protein NbS00039611g0003.1 protein NbS00045597g0005.1 protein NbS00009309g0005.1 protein ; (*GB) gi|297734589|emb|CBI16640.3| (e_value=5e-100) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9US05|BFR2_SCHPO (e_value=6e-19) Protein bfr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bfr2 PE=1 SV=1;; (*TAIR) AT5G61330.1 (e_value=4e-89) | Symbols: | rRNA processing protein-related | chr5:24657287-24660103 REVERSE LENGTH=436;; (*ITAG) Solyc01g090470.2.1 (e_value=4e-142) genomic_reference:SL2.40ch01 gene_region:75913574-75920741 transcript_region:SL2.40ch01:75913574..75920741+ go_terms:GO:0043522 functional_description:"Bfr2 (AHRD V1 **-- B6JYE3_SCHJY); contains Interpro domain(s) IPR012617 TRAUB "; GO:0043522 NbS00005801g0004.1 protein ; (*ITAG) Solyc06g068040.2.1 (e_value=1e-16) genomic_reference:SL2.40ch06 gene_region:38555824-38558971 transcript_region:SL2.40ch06:38555824..38558971+ go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- Q9M7D3_SOLLC); contains Interpro domain(s) IPR000743 Glycoside hydrolase, family 28 "; GO:0005975 NbC23679489g0001.1 protein ; (*GB) gi|255551116|ref|XP_002516606.1| (e_value=3e-33) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G25660.1 (e_value=3e-33) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067850.2.1 (e_value=2e-35) genomic_reference:SL2.40ch08 gene_region:54091438-54109140 transcript_region:SL2.40ch08:54091438..54109140- functional_description:"Homology to unknown gene (AHRD V1 **-- Q016Y8_OSTTA); contains Interpro domain(s) IPR007452 Protein of unknown function DUF490 "; NbS00015465g0005.1 protein NbS00021668g0002.1 protein NbS00049077g0002.1 protein NbS00029045g0008.1 protein NbS00015096g0003.1 protein NbS00039472g0003.1 protein NbS00004297g0009.1 protein NbS00020001g0002.1 protein NbS00020001g0003.1 protein NbS00010549g0006.1 protein NbS00010549g0009.1 protein NbS00024323g0002.1 protein NbS00014692g0014.1 protein NbS00014692g0015.1 protein NbS00014692g0019.1 protein NbS00029218g0012.1 protein NbS00029218g0009.1 protein NbS00038191g0001.1 protein NbS00023756g0006.1 protein NbC24588272g0002.1 protein ; (*GB) gi|222630305|gb|EEE62437.1| (e_value=5e-84) hypothetical protein OsJ_17229 [Oryza sativa Japonica Group];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=2e-77) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT4G38780.1 (e_value=8e-84) | Symbols: | Pre-mRNA-processing-splicing factor | chr4:18101438-18111029 REVERSE LENGTH=2332;; (*ITAG) Solyc07g008880.2.1 (e_value=6e-88) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00020512g0002.1 protein NbS00028339g0003.1 protein NbS00008866g0004.1 protein NbS00008866g0005.1 protein NbS00011870g0002.1 protein NbS00011870g0003.1 protein ; (*ITAG) Solyc09g031650.2.1 (e_value=4e-23) genomic_reference:SL2.40ch09 gene_region:23381791-23386705 transcript_region:SL2.40ch09:23381791..23386705- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 *--- Q1RQ04_CIOIN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00011539g0002.1 protein ; (*GB) gi|255568846|ref|XP_002525394.1| (e_value=1e-27) ubiquitin, putative [Ricinus communis];; (*SWP) sp|P62981|RS27A_SOLTU (e_value=4e-28) Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=2 SV=2;; (*TAIR) AT2G47110.2 (e_value=5e-25) | Symbols: UBQ6 | ubiquitin 6 | chr2:19344701-19345174 FORWARD LENGTH=157;; (*ITAG) Solyc01g056940.2.1 (e_value=3e-29) genomic_reference:SL2.40ch01 gene_region:50504376-50505131 transcript_region:SL2.40ch01:50504376..50505131+ go_terms:GO:0005515 functional_description:"Ubiquitin (AHRD V1 ***- D3PHG3_9MAXI); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; GO:0005515 NbS00001796g0111.1 protein NbS00001796g0107.1 protein NbS00001796g0108.1 protein NbS00043774g0003.1 protein NbS00045684g0001.1 protein ; (*ITAG) Solyc02g078170.1.1 (e_value=6e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:37515955-37518127 transcript_region:SL2.40ch02:37515955..37518127- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor protein kinase like protein (AHRD V1 **** O49445_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005515,GO:0004675 NbS00010310g0003.1 protein NbS00012798g0003.1 protein NbS00012798g0005.1 protein NbS00002023g0101.1 protein NbS00001292g0102.1 protein NbS00001292g0103.1 protein NbS00020307g0006.1 protein NbS00009040g0004.1 protein NbS00009040g0006.1 protein NbS00016251g0003.1 protein NbS00009519g0011.1 protein NbS00009519g0005.1 protein NbS00009519g0006.1 protein NbS00009519g0010.1 protein ; (*GB) gi|15144510|gb|AAK84477.1| (e_value=2e-18) putative centromere protein [Solanum lycopersicum];; (*ITAG) Solyc11g010620.1.1 (e_value=3e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:3678556-3682449 transcript_region:SL2.40ch11:3678556..3682449- functional_description:"Unknown Protein (AHRD V1)"; NbS00008804g0003.1 protein ; (*GB) gi|356510059|ref|XP_003523758.1| (e_value=2e-13) PREDICTED: uncharacterized protein LOC100783686 [Glycine max];; (*TAIR) AT5G11700.2 (e_value=8e-13) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=7e-22) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00014695g0008.1 protein NbS00036285g0004.1 protein NbS00036285g0005.1 protein NbS00011203g0004.1 protein NbS00001827g0013.1 protein NbS00001827g0009.1 protein NbS00005925g0005.1 protein NbS00005925g0106.1 protein NbS00005925g0107.1 protein NbS00005925g0109.1 protein NbS00005925g0202.1 protein NbS00029733g0004.1 protein NbS00003111g0005.1 protein ; (*ITAG) Solyc02g069090.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:33631872-33638685 transcript_region:SL2.40ch02:33631872..33638685- go_terms:GO:0030984 functional_description:"Cathepsin B (AHRD V1 ***- Q1HER6_NICBE); contains Interpro domain(s) IPR015643 Peptidase C1A, cathepsin B "; GO:0030984 NbS00003111g0007.1 protein NbS00003111g0008.1 protein NbS00009904g0002.1 protein NbS00001734g0005.1 protein NbS00001734g0007.1 protein NbS00045199g0004.1 protein NbS00034246g0003.1 protein NbS00034246g0004.1 protein NbS00030470g0005.1 protein ; (*ITAG) Solyc01g095230.2.1 (e_value=3e-13) genomic_reference:SL2.40ch01 gene_region:78332859-78338053 transcript_region:SL2.40ch01:78332859..78338053- functional_description:"Programmed cell death 7 (AHRD V1 *-*- Q567N3_DANRE)"; NbS00030470g0007.1 protein NbS00000181g0006.1 protein NbS00001254g0004.1 protein NbS00001254g0005.1 protein NbS00037608g0001.1 protein ; (*GB) gi|296082894|emb|CBI22195.3| (e_value=5e-47) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G55160.1 (e_value=3e-39) | Symbols: | unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr3:20445629-20452400 REVERSE LENGTH=2130;; (*ITAG) Solyc03g062650.2.1 (e_value=2e-65) genomic_reference:SL2.40ch03 gene_region:29016655-29027067 transcript_region:SL2.40ch03:29016655..29027067- go_terms:GO:0055114 functional_description:"Thyroid adenoma-associated protein homolog (AHRD V1 *--- THADA_CANFA); contains Interpro domain(s) IPR019442 Protein of unknown function DUF2428, death-receptor-like "; GO:0055114 NbS00021573g0011.1 protein NbS00024916g0004.1 protein NbS00039764g0004.1 protein NbS00039764g0005.1 protein NbS00016036g0003.1 protein ; (*GB) gi|255548037|ref|XP_002515075.1| (e_value=2e-38) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8L838|COG4_ARATH (e_value=8e-39) Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1;; (*TAIR) AT4G01400.2 (e_value=6e-40) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). | chr4:573098-575648 REVERSE LENGTH=738;; (*ITAG) Solyc07g056010.2.1 (e_value=6e-43) genomic_reference:SL2.40ch07 gene_region:61233825-61238820 transcript_region:SL2.40ch07:61233825..61238820- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 4 (AHRD V1 ***- COG4_ARATH); contains Interpro domain(s) IPR013167 COG4 transport "; GO:0005515 NbS00043545g0003.1 protein ; (*GB) gi|357510255|ref|XP_003625416.1| (e_value=6e-36) Chemotaxis protein cheY-like protein [Medicago truncatula];; (*SWP) sp|Q9M8Y4|ARR22_ARATH (e_value=2e-28) Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1;; (*TAIR) AT3G04280.3 (e_value=2e-29) | Symbols: ARR22, RR22 | response regulator 22 | chr3:1130138-1130689 REVERSE LENGTH=142;; (*ITAG) Solyc11g071630.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:52133392-52134005 transcript_region:SL2.40ch11:52133392..52134005- go_terms:GO:0006355 functional_description:"Sensor histidine kinase LuxQ (AHRD V1 ***- D2YSE6_VIBMI); contains Interpro domain(s) IPR001789 Signal transduction response regulator, receiver region "; GO:0006355 NbS00008982g0003.1 protein NbS00010699g0005.1 protein NbS00010699g0007.1 protein NbS00001380g0004.1 protein NbS00000368g0002.1 protein NbS00013476g0003.1 protein NbS00015816g0007.1 protein NbS00001513g0005.1 protein NbS00002451g0001.1 protein ; (*ITAG) Solyc09g076020.2.1 (e_value=1e-15) genomic_reference:SL2.40ch09 gene_region:63204638-63210368 transcript_region:SL2.40ch09:63204638..63210368+ go_terms:GO:0004424 functional_description:"Imidazoleglycerol-phosphate dehydratase (AHRD V1 **** B9RTS0_RICCO); contains Interpro domain(s) IPR000807 Imidazole glycerol-phosphate dehydratase "; GO:0004424 NbC24538624g0001.1 protein ; (*GB) gi|225423907|ref|XP_002281818.1| (e_value=3e-29) PREDICTED: BRO1 domain-containing protein BROX [Vitis vinifera];; (*TAIR) AT1G13310.1 (e_value=2e-19) | Symbols: | Endosomal targeting BRO1-like domain-containing protein | chr1:4561217-4562929 REVERSE LENGTH=374;; (*ITAG) Solyc04g007020.2.1 (e_value=1e-39) genomic_reference:SL2.40ch04 gene_region:738731-742225 transcript_region:SL2.40ch04:738731..742225- functional_description:"BRO1 domain-containing protein BROX (AHRD V1 **-- B5X0Z6_SALSA); contains Interpro domain(s) IPR004328 BRO1 "; NbS00020263g0002.1 protein NbS00008935g0007.1 protein NbS00008935g0008.1 protein NbS00024294g0104.1 protein NbS00045211g0002.1 protein NbS00017832g0004.1 protein ; (*GB) gi|356530229|ref|XP_003533685.1| (e_value=3e-17) PREDICTED: probable S-acyltransferase At3g18620-like [Glycine max];; (*SWP) sp|Q9LIH7|ZDHC7_ARATH (e_value=5e-15) Probable S-acyltransferase At3g18620 OS=Arabidopsis thaliana GN=At3g18620 PE=2 SV=1;; (*TAIR) AT3G18620.1 (e_value=4e-16) | Symbols: | DHHC-type zinc finger family protein | chr3:6408849-6410716 FORWARD LENGTH=345;; (*ITAG) Solyc04g009380.1.1 (e_value=1e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2807742-2815384 transcript_region:SL2.40ch04:2807742..2815384+ go_terms:GO:0008270 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- B6TA04_MAIZE); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0008270 NbS00039336g0007.1 protein NbS00002177g0007.1 protein NbS00059003g0002.1 protein NbS00023329g0007.1 protein NbS00023329g0010.1 protein NbS00038384g0001.1 protein NbS00038384g0002.1 protein NbS00003217g0011.1 protein NbS00003217g0006.1 protein NbS00003217g0009.1 protein NbS00034440g0003.1 protein NbS00031297g0009.1 protein ; (*GB) gi|224056405|ref|XP_002298840.1| (e_value=5e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|P48528|PPX2_ARATH (e_value=2e-24) Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2;; (*TAIR) AT5G55260.1 (e_value=1e-25) | Symbols: PPX2, PPX-2 | protein phosphatase X 2 | chr5:22416808-22418621 FORWARD LENGTH=305;; (*ITAG) Solyc07g065020.2.1 (e_value=3e-27) genomic_reference:SL2.40ch07 gene_region:64179982-64186849 transcript_region:SL2.40ch07:64179982..64186849- go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** B9I197_POPTR); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00020595g0003.1 protein NbS00028572g0001.1 protein NbS00035803g0010.1 protein NbS00026842g0007.1 protein NbS00006859g0010.1 protein NbS00051911g0001.1 protein ; (*ITAG) Solyc05g005250.2.1 (e_value=4e-14) genomic_reference:SL2.40ch05 gene_region:195242-204180 transcript_region:SL2.40ch05:195242..204180+ go_terms:GO:0004594 functional_description:"Pantothenate kinase (AHRD V1 **** C1MLQ0_MICPS); contains Interpro domain(s) IPR004567 Eukaryotic pantothenate kinase IPR011602 Fumble "; GO:0004594 NbS00000851g0004.1 protein NbS00000851g0005.1 protein ; (*GB) gi|213496075|ref|YP_002321510.1| (e_value=8e-19) putative coat protein p42 [Southern tomato virus]; NbS00058003g0001.1 protein NbS00035220g0001.1 protein NbS00035220g0105.1 protein NbS00035220g0202.1 protein NbS00012388g0003.1 protein ; (*GB) gi|71726952|gb|AAZ39647.1| (e_value=3e-17) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|Q43246|C88A1_MAIZE (e_value=4e-13) Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 SV=1;; (*TAIR) AT1G05160.1 (e_value=2e-13) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc10g007860.2.1 (e_value=2e-23) genomic_reference:SL2.40ch10 gene_region:2067866-2070928 transcript_region:SL2.40ch10:2067866..2070928+ go_terms:GO:0051777,GO:0019825 functional_description:"Cytochrome P450 ent-kaurenoic acid oxidase (AHRD V1 **** B9IB42_POPTR); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0051777,GO:0019825 NbS00026935g0001.1 protein NbS00026935g0002.1 protein NbS00027317g0006.1 protein ; (*ITAG) Solyc00g005880.1.1 (e_value=8e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:3437945-3439094 transcript_region:SL2.40ch00:3437945..3439094- functional_description:"Unknown Protein (AHRD V1)"; NbS00037438g0001.1 protein NbS00060954g0003.1 protein NbS00060954g0005.1 protein NbS00008506g0006.1 protein NbS00041673g0002.1 protein ; (*GB) gi|357517325|ref|XP_003628951.1| (e_value=1e-19) U2-associated protein SR140 [Medicago truncatula];; (*TAIR) AT5G25060.1 (e_value=5e-18) | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946;; (*ITAG) Solyc03g025280.2.1 (e_value=4e-26) genomic_reference:SL2.40ch03 gene_region:7095501-7113532 transcript_region:SL2.40ch03:7095501..7113532+ go_terms:GO:0005515 functional_description:"RNA-binding protein (AHRD V1 *--* B6K5V3_SCHJY); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00033141g0003.1 protein ; (*GB) gi|224082378|ref|XP_002306670.1| (e_value=4e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|P0DH62|Y4407_SELML (e_value=4e-19) Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1;; (*TAIR) AT5G56790.1 (e_value=2e-26) | Symbols: | Protein kinase superfamily protein | chr5:22968610-22971391 FORWARD LENGTH=669;; (*ITAG) Solyc04g063370.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:54608074-54614389 transcript_region:SL2.40ch04:54608074..54614389+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 *-*- A7VM65_9VIRI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00010028g0005.1 protein ; (*GB) gi|388508852|gb|AFK42492.1| (e_value=5e-16) unknown [Lotus japonicus];; (*TAIR) AT5G61170.1 (e_value=2e-15) | Symbols: | Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143;; (*ITAG) Solyc12g039120.1.1 (e_value=3e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37883272-37884761 transcript_region:SL2.40ch12:37883272..37884761- go_terms:GO:0005840 functional_description:"40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e "; GO:0005840 NbS00010028g0006.1 protein NbS00003136g0008.1 protein NbS00003136g0102.1 protein NbS00003136g0103.1 protein NbS00003136g0104.1 protein NbS00018806g0002.1 protein ; (*GB) gi|356524868|ref|XP_003531050.1| (e_value=7e-22) PREDICTED: dynamin-like protein ARC5-like [Glycine max];; (*SWP) sp|Q84N64|ARC5_ARATH (e_value=2e-17) Dynamin-like protein ARC5 OS=Arabidopsis thaliana GN=ARC5 PE=1 SV=2;; (*TAIR) AT3G19720.2 (e_value=1e-18) | Symbols: ARC5, DRP5B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6850591-6855389 REVERSE LENGTH=741;; (*ITAG) Solyc10g047050.1.1 (e_value=9e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:34721978-34741037 transcript_region:SL2.40ch10:34721978..34741037+ go_terms:GO:0005525 functional_description:"Dynamin-like protein (AHRD V1 ***- Q84N64_ARATH); contains Interpro domain(s) IPR001401 Dynamin, GTPase region "; GO:0005525 NbS00039094g0003.1 protein NbS00032708g0002.1 protein NbS00016306g0001.1 protein NbS00014735g0010.1 protein NbS00025223g0012.1 protein ; (*GB) gi|147853302|emb|CAN78544.1| (e_value=1e-42) hypothetical protein VITISV_028082 [Vitis vinifera]; NbS00026830g0004.1 protein ; (*ITAG) Solyc12g006880.1.1 (e_value=2e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1323811-1329389 transcript_region:SL2.40ch12:1323811..1329389- functional_description:"PPPDE peptidase domain-containing protein 1 (AHRD V1 **-- PPDE1_XENLA); contains Interpro domain(s) IPR008580 Protein of unknown function DUF862, eukaryotic "; NbS00010212g0004.1 protein ; (*ITAG) Solyc10g044500.1.1 (e_value=4e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00024478g0006.1 protein NbS00008175g0002.1 protein NbS00008175g0005.1 protein NbS00008175g0104.1 protein NbS00009119g0006.1 protein NbS00009119g0007.1 protein NbS00009119g0009.1 protein ; (*GB) gi|359477777|ref|XP_002282135.2| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100261301 [Vitis vinifera];; (*ITAG) Solyc03g005710.1.1 (e_value=2e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:502006-505012 transcript_region:SL2.40ch03:502006..505012- go_terms:GO:0005488 functional_description:"TPR domain protein (AHRD V1 *--- B6U810_MAIZE); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00025316g0008.1 protein NbS00036294g0003.1 protein ; (*GB) gi|82621176|gb|ABB86276.1| (e_value=9e-29) mitochondrial processing peptidase-like [Solanum tuberosum];; (*SWP) sp|Q42290|MPPB_ARATH (e_value=3e-22) Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2;; (*TAIR) AT3G02090.1 (e_value=3e-23) | Symbols: MPPBETA | Insulinase (Peptidase family M16) protein | chr3:365624-368526 FORWARD LENGTH=531;; (*ITAG) Solyc02g088700.2.1 (e_value=3e-30) genomic_reference:SL2.40ch02 gene_region:45268178-45273518 transcript_region:SL2.40ch02:45268178..45273518+ go_terms:GO:0032403 functional_description:"Mitochondrial processing peptidase beta subunit (AHRD V1 ***- Q9AXQ2_CUCME); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0032403 NbS00034067g0001.1 protein NbS00029940g0004.1 protein NbS00007618g0008.1 protein NbS00002324g0106.1 protein NbS00005031g0015.1 protein NbS00005031g0007.1 protein NbS00008803g0004.1 protein NbS00008803g0009.1 protein NbS00058766g0002.1 protein ; (*GB) gi|225443738|ref|XP_002265546.1| (e_value=1e-129) PREDICTED: uncharacterized protein LOC100241189 [Vitis vinifera];; (*TAIR) AT4G18810.1 (e_value=7e-127) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr4:10322622-10325735 REVERSE LENGTH=596;; (*ITAG) Solyc02g072160.2.1 (e_value=4e-147) genomic_reference:SL2.40ch02 gene_region:36050355-36058273 transcript_region:SL2.40ch02:36050355..36058273+ go_terms:GO:0008152 functional_description:"NADH ubiquinone oxidoreductase complex I intermediate-associated protein 30 (AHRD V1 **-- B2IZH1_NOSP7); contains Interpro domain(s) IPR013857 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 "; GO:0008152 NbS00002501g0003.1 protein NbS00002501g0102.1 protein NbS00019480g0004.1 protein ; (*GB) gi|217074440|gb|ACJ85580.1| (e_value=1e-25) unknown [Medicago truncatula];; (*TAIR) AT2G37370.1 (e_value=4e-22) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:15679273-15682932 FORWARD LENGTH=669;; (*ITAG) Solyc09g005900.2.1 (e_value=1e-49) genomic_reference:SL2.40ch09 gene_region:620002-628923 transcript_region:SL2.40ch09:620002..628923- functional_description:"Unknown Protein (AHRD V1)"; NbS00042832g0006.1 protein NbS00000673g0013.1 protein NbS00000673g0017.1 protein NbS00000673g0010.1 protein NbS00009098g0008.1 protein NbS00024060g0001.1 protein NbS00000065g0005.1 protein NbS00015128g0014.1 protein NbS00015128g0010.1 protein NbS00002180g0107.1 protein NbS00002180g0108.1 protein NbS00020325g0001.1 protein ; (*GB) gi|356516297|ref|XP_003526832.1| (e_value=3e-19) PREDICTED: developmentally-regulated GTP-binding protein 1-like [Glycine max];; (*SWP) sp|P34280|YKK3_CAEEL (e_value=1e-12) Uncharacterized GTP-binding protein C02F5.3 OS=Caenorhabditis elegans GN=C02F5.3 PE=2 SV=2;; (*TAIR) AT4G39520.1 (e_value=4e-14) | Symbols: | GTP-binding protein-related | chr4:18371329-18374000 REVERSE LENGTH=369;; (*ITAG) Solyc04g051830.2.1 (e_value=2e-17) genomic_reference:SL2.40ch04 gene_region:50286084-50298122 transcript_region:SL2.40ch04:50286084..50298122- go_terms:GO:0008134 functional_description:"Developmentally regulated GTP binding protein 1 (AHRD V1 **-* A8WE95_PEA); contains Interpro domain(s) IPR004095 TGS "; GO:0008134 NbS00004945g0004.1 protein NbS00018999g0007.1 protein NbS00018999g0008.1 protein NbS00018999g0010.1 protein NbS00026938g0004.1 protein NbS00002918g0003.1 protein ; (*ITAG) Solyc01g073870.2.1 (e_value=3e-47) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00007786g0003.1 protein NbS00022565g0002.1 protein ; (*GB) gi|297743053|emb|CBI35920.3| (e_value=4e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G13940.1 (e_value=7e-30) | Symbols: | DNA binding;DNA-directed RNA polymerases | chr3:4600647-4602412 REVERSE LENGTH=442;; (*ITAG) Solyc06g053330.2.1 (e_value=1e-54) genomic_reference:SL2.40ch06 gene_region:32566171-32572561 transcript_region:SL2.40ch06:32566171..32572561- go_terms:GO:0005634 functional_description:"DNA-directed RNA polymerase I subunit rpa49 (AHRD V1 *-*- RPA49_DICDI); contains Interpro domain(s) IPR009668 RNA polymerase I associated factor, A49-like "; GO:0005634 NbS00004746g0004.1 protein NbS00004746g0102.1 protein NbS00044473g0002.1 protein NbS00015515g0003.1 protein ; (*GB) gi|225429582|ref|XP_002280239.1| (e_value=1e-15) PREDICTED: puromycin-sensitive aminopeptidase [Vitis vinifera];; (*ITAG) Solyc08g062630.2.1 (e_value=4e-21) genomic_reference:SL2.40ch08 gene_region:48821743-48831500 transcript_region:SL2.40ch08:48821743..48831500+ go_terms:GO:0070006 functional_description:"Aminopeptidase-like protein (AHRD V1 ***- Q9SN00_ARATH); contains Interpro domain(s) IPR015568 Peptidase M1, puromycin-sensitive aminopeptidase "; GO:0070006 NbS00015515g0006.1 protein ; (*GB) gi|356538317|ref|XP_003537650.1| (e_value=4e-53) PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max];; (*SWP) sp|Q7X659|VP35A_ARATH (e_value=5e-52) Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1;; (*TAIR) AT2G17790.1 (e_value=4e-53) | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733685-7739344 FORWARD LENGTH=787;; (*ITAG) Solyc03g033400.2.1 (e_value=6e-59) genomic_reference:SL2.40ch03 gene_region:9246433-9256147 transcript_region:SL2.40ch03:9246433..9256147+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00022406g0205.1 protein NbS00022406g0208.1 protein NbS00026545g0004.1 protein NbS00026545g0005.1 protein NbS00008257g0104.1 protein NbS00008257g0107.1 protein NbS00008257g0108.1 protein NbS00008257g0204.1 protein NbS00008257g0306.1 protein NbS00008257g0307.1 protein NbS00003827g0002.1 protein NbC23837758g0001.1 protein ; (*GB) gi|356507640|ref|XP_003522572.1| (e_value=6e-16) PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max];; (*SWP) sp|Q9XI07|SWI3C_ARATH (e_value=3e-15) SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1;; (*TAIR) AT1G21700.1 (e_value=2e-16) | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807;; (*ITAG) Solyc06g060120.2.1 (e_value=8e-23) genomic_reference:SL2.40ch06 gene_region:34441472-34459907 transcript_region:SL2.40ch06:34441472..34459907- go_terms:GO:0005515 functional_description:"SWI/SNF complex subunit SMARCC1 (AHRD V1 *--- SMRC1_MOUSE); contains Interpro domain(s) IPR007526 SWIRM "; GO:0005515 NbS00007724g0005.1 protein NbS00011701g0007.1 protein NbS00020618g0003.1 protein ; (*GB) gi|18401521|ref|NP_566579.1| (e_value=3e-25) 50S ribosomal protein L3-2 [Arabidopsis thaliana];; (*SWP) sp|Q9LRN8|RK3B_ARATH (e_value=9e-27) 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1;; (*TAIR) AT3G17465.1 (e_value=7e-28) | Symbols: RPL3P | ribosomal protein L3 plastid | chr3:5978059-5979572 REVERSE LENGTH=324;; (*ITAG) Solyc03g117320.2.1 (e_value=3e-26) genomic_reference:SL2.40ch03 gene_region:60533198-60537411 transcript_region:SL2.40ch03:60533198..60537411- go_terms:GO:0005515,GO:0003723 functional_description:"50S ribosomal protein L3-2 (AHRD V1 ***- B6TFD9_MAIZE); contains Interpro domain(s) IPR019927 Ribosomal protein L3, bacterial/organelle-type "; GO:0005515,GO:0003723 NbS00009197g0105.1 protein NbS00009197g0106.1 protein NbS00009197g0107.1 protein NbC24237671g0001.1 protein ; (*GB) gi|84873488|gb|ABC67804.1| (e_value=2e-32) protein kinase SRK [Nicotiana tabacum];; (*SWP) sp|Q9SN43|CIPKC_ARATH (e_value=1e-30) CBL-interacting serine/threonine-protein kinase 12 OS=Arabidopsis thaliana GN=CIPK12 PE=1 SV=1;; (*TAIR) AT4G18700.1 (e_value=9e-32) | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting protein kinase 12 | chr4:10289110-10290579 REVERSE LENGTH=489;; (*ITAG) Solyc02g072530.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:36297467-36298903 transcript_region:SL2.40ch02:36297467..36298903+ go_terms:GO:0035175 functional_description:"CBL-interacting protein kinase 01 (AHRD V1 **** A5BKH1_VITVI); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0035175 NbS00030797g0003.1 protein NbS00030247g0004.1 protein NbS00022023g0013.1 protein NbS00022023g0009.1 protein NbS00033951g0005.1 protein ; (*ITAG) Solyc04g080270.2.1 (e_value=6e-37) genomic_reference:SL2.40ch04 gene_region:62098225-62103204 transcript_region:SL2.40ch04:62098225..62103204- functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *-*- Q9FMZ3_ARATH)"; NbS00010373g0004.1 protein NbS00017997g0211.1 protein NbS00017997g0213.1 protein NbS00009748g0103.1 protein NbS00057758g0001.1 protein NbS00026347g0002.1 protein NbS00019585g0001.1 protein NbS00034563g0003.1 protein NbS00055362g0002.1 protein NbC24222673g0002.1 protein ; (*GB) gi|73811195|gb|AAZ86534.1| (e_value=2e-53) pyruvate kinase [Capsicum annuum];; (*SWP) sp|P22200|KPYC_SOLTU (e_value=3e-54) Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT5G63680.1 (e_value=7e-47) | Symbols: | Pyruvate kinase family protein | chr5:25490507-25492530 FORWARD LENGTH=510;; (*ITAG) Solyc04g008740.2.1 (e_value=4e-56) genomic_reference:SL2.40ch04 gene_region:2398964-2404186 transcript_region:SL2.40ch04:2398964..2404186- go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** Q3S1N4_SOLTU); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00030019g0002.1 protein NbS00049949g0006.1 protein NbS00062107g0002.1 protein NbS00005786g0102.1 protein NbS00005786g0104.1 protein NbS00032913g0003.1 protein ; (*GB) gi|356567690|ref|XP_003552050.1| (e_value=2e-22) PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max];; (*SWP) sp|F4KBF3|AAE17_ARATH (e_value=1e-18) Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1;; (*TAIR) AT5G23050.1 (e_value=8e-20) | Symbols: AAE17 | acyl-activating enzyme 17 | chr5:7731513-7735399 REVERSE LENGTH=721;; (*ITAG) Solyc03g114460.2.1 (e_value=2e-39) genomic_reference:SL2.40ch03 gene_region:58506023-58517475 transcript_region:SL2.40ch03:58506023..58517475+ go_terms:GO:0030729,GO:0003987 functional_description:"Acetyl-coenzyme A synthetase (AHRD V1 ***- D5HA95_SALRM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0030729,GO:0003987 NbS00033009g0001.1 protein ; (*GB) gi|2511737|gb|AAB80931.1| (e_value=4e-21) caffeoyl-CoA 3-O-methyltransferase 5 [Nicotiana tabacum];; (*SWP) sp|O04899|CAMT5_TOBAC (e_value=1e-22) Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1;; (*TAIR) AT4G34050.1 (e_value=5e-18) | Symbols: CCoAOMT1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:16310844-16311973 FORWARD LENGTH=259;; (*ITAG) Solyc10g050160.1.1 (e_value=6e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:43521248-43524420 transcript_region:SL2.40ch10:43521248..43524420- go_terms:GO:0016206,GO:0042409 functional_description:"Caffeoyl-CoA 3-O-methyltransferase (AHRD V1 **** A6XBP7_BRARP); contains Interpro domain(s) IPR002935 O-methyltransferase, family 3 "; GO:0016206,GO:0042409 NbS00026924g0005.1 protein ; (*ITAG) Solyc03g019880.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:6774310-6777201 transcript_region:SL2.40ch03:6774310..6777201+ functional_description:"UPF0426 protein At1g28150, chloroplastic (AHRD V1 ***- Y1815_ARATH)"; NbS00026924g0006.1 protein NbS00055375g0002.1 protein ; (*ITAG) Solyc05g052220.2.1 (e_value=6e-16) genomic_reference:SL2.40ch05 gene_region:61645289-61653781 transcript_region:SL2.40ch05:61645289..61653781+ go_terms:GO:0000151 functional_description:"U-box domain-containing protein 62 (AHRD V1 ***- PUB62_ARATH); contains Interpro domain(s) IPR003613 U box domain "; GO:0000151 NbS00008661g0003.1 protein ; (*GB) gi|147766576|emb|CAN76225.1| (e_value=2e-50) hypothetical protein VITISV_017234 [Vitis vinifera];; (*SWP) sp|P46607|HGL2_ARATH (e_value=2e-34) Homeobox-leucine zipper protein GLABRA 2 OS=Arabidopsis thaliana GN=GL2 PE=2 SV=3;; (*TAIR) AT1G79840.1 (e_value=2e-35) | Symbols: GL2 | HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain | chr1:30037526-30041013 FORWARD LENGTH=747;; (*ITAG) Solyc03g120620.2.1 (e_value=1e-52) genomic_reference:SL2.40ch03 gene_region:63020513-63026632 transcript_region:SL2.40ch03:63020513..63026632+ go_terms:GO:0003677 functional_description:"Homeobox-leucine zipper protein ATHB-15 (AHRD V1 *-*- ATB15_ARATH); contains Interpro domain(s) IPR002913 Lipid-binding START "; GO:0003677 NbS00008661g0005.1 protein NbS00007531g0004.1 protein NbS00007531g0006.1 protein NbS00060983g0001.1 protein ; (*GB) gi|296083272|emb|CBI22908.3| (e_value=2e-30) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8VZF1|AEE7_ARATH (e_value=1e-26) Acetate/butyrate--CoA ligase AAE7, peroxisomal OS=Arabidopsis thaliana GN=AAE7 PE=1 SV=1;; (*TAIR) AT3G16910.1 (e_value=1e-27) | Symbols: AAE7, ACN1 | acyl-activating enzyme 7 | chr3:5773231-5775411 REVERSE LENGTH=569;; (*ITAG) Solyc12g099360.1.1 (e_value=6e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64880055-64882904 transcript_region:SL2.40ch12:64880055..64882904+ go_terms:GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** Q2W3Z0_MAGSA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0018858 NbS00002821g0005.1 protein NbS00002821g0007.1 protein ; (*GB) gi|255566265|ref|XP_002524120.1| (e_value=6e-15) Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis];; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=8e-15) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2;; (*TAIR) AT5G06600.3 (e_value=6e-16) | Symbols: UBP12 | ubiquitin-specific protease 12 | chr5:2020682-2027834 REVERSE LENGTH=985;; (*ITAG) Solyc05g055090.2.1 (e_value=6e-19) genomic_reference:SL2.40ch05 gene_region:64019331-64037534 transcript_region:SL2.40ch05:64019331..64037534- go_terms:GO:0004843,GO:0042803 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 **** Q2R2A3_ORYSJ); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843,GO:0042803 NbS00002821g0107.1 protein NbS00002821g0110.1 protein NbS00016654g0005.1 protein NbS00016654g0009.1 protein NbS00049933g0003.1 protein NbS00006266g0003.1 protein NbS00006266g0004.1 protein NbS00006266g0105.1 protein NbS00007090g0011.1 protein NbS00007090g0004.1 protein NbS00003345g0005.1 protein ; (*ITAG) Solyc09g059390.2.1 (e_value=2e-19) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00007435g0012.1 protein NbS00007435g0008.1 protein ; (*ITAG) Solyc11g007000.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1492033-1495752 transcript_region:SL2.40ch11:1492033..1495752+ go_terms:GO:0009055 functional_description:"Heme A synthase (AHRD V1 ***- C6MFW4_9PROT); contains Interpro domain(s) IPR003780 Cytochrome oxidase assembly "; GO:0009055 NbS00007435g0009.1 protein NbS00013590g0008.1 protein NbS00028719g0001.1 protein ; (*GB) gi|48210049|gb|AAT40548.1| (e_value=6e-20) Putative vicilin, identical [Solanum demissum];; (*ITAG) Solyc11g072380.1.1 (e_value=9e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:52644546-52647817 transcript_region:SL2.40ch11:52644546..52647817- go_terms:GO:0045735 functional_description:"Vicilin-like protein (Fragment) (AHRD V1 **-- Q9SEW4_9ROSI); contains Interpro domain(s) IPR011051 Cupin, RmlC-type "; GO:0045735 NbS00028616g0002.1 protein NbS00017120g0004.1 protein NbS00018325g0001.1 protein NbS00005490g0004.1 protein NbS00047838g0011.1 protein ; (*ITAG) Solyc01g102840.2.1 (e_value=6e-38) genomic_reference:SL2.40ch01 gene_region:83291991-83297153 transcript_region:SL2.40ch01:83291991..83297153+ go_terms:GO:0030275,GO:0000166 functional_description:"Tir-nbs, resistance protein fragment"; GO:0030275,GO:0000166 NbS00012584g0007.1 protein NbS00042310g0004.1 protein NbS00036056g0001.1 protein NbS00007134g0009.1 protein NbS00012909g0002.1 protein ; (*GB) gi|357436069|ref|XP_003588310.1| (e_value=1e-22) hypothetical protein MTR_1g005810 [Medicago truncatula];; (*ITAG) Solyc07g017930.1.1 (e_value=6e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:8581616-8583506 transcript_region:SL2.40ch07:8581616..8583506- functional_description:"Unknown Protein (AHRD V1)"; NbS00033131g0005.1 protein ; (*GB) gi|225424176|ref|XP_002284096.1| (e_value=3e-53) PREDICTED: xylosyltransferase 2 [Vitis vinifera];; (*TAIR) AT1G71070.1 (e_value=6e-44) | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr1:26807440-26809152 REVERSE LENGTH=395;; (*ITAG) Solyc05g008340.2.1 (e_value=3e-68) genomic_reference:SL2.40ch05 gene_region:2699143-2703279 transcript_region:SL2.40ch05:2699143..2703279- go_terms:GO:0016757 functional_description:"Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 (AHRD V1 *--* GCNT7_HUMAN); contains Interpro domain(s) IPR003406 Glycosyl transferase, family 14 "; GO:0016757 NbS00006530g0002.1 protein ; (*GB) gi|147807890|emb|CAN70948.1| (e_value=1e-12) hypothetical protein VITISV_018487 [Vitis vinifera]; NbS00008313g0012.1 protein NbS00008313g0008.1 protein NbS00008977g0001.1 protein ; (*ITAG) Solyc01g079230.2.1 (e_value=8e-23) genomic_reference:SL2.40ch01 gene_region:70832208-70839060 transcript_region:SL2.40ch01:70832208..70839060+ go_terms:GO:0003723 functional_description:"Agenet domain-containing protein (AHRD V1 *-*- D7KQP5_ARALY); contains Interpro domain(s) IPR007930 Protein of unknown function DUF724 "; GO:0003723 NbS00026197g0004.1 protein NbS00048674g0007.1 protein NbS00035407g0001.1 protein NbS00002352g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-16) hypothetical protein [Nicotiana tabacum]; NbS00002352g0007.1 protein ; (*GB) gi|41176619|gb|AAR99599.1| (e_value=4e-14) 4-alpha-glucanotransferase [Solanum tuberosum];; (*SWP) sp|Q8RXD9|DPE2_ARATH (e_value=2e-14) 4-alpha-glucanotransferase DPE2 OS=Arabidopsis thaliana GN=DPE2 PE=1 SV=1;; (*TAIR) AT2G40840.1 (e_value=1e-15) | Symbols: DPE2 | disproportionating enzyme 2 | chr2:17045368-17050779 FORWARD LENGTH=955;; (*ITAG) Solyc02g020980.2.1 (e_value=7e-17) genomic_reference:SL2.40ch02 gene_region:11526882-11568630 transcript_region:SL2.40ch02:11526882..11568630- go_terms:GO:0004134,GO:0010297 functional_description:"4-alpha-glucanotransferase (AHRD V1 **** Q6R608_SOLTU); contains Interpro domain(s) IPR003385 Glycoside hydrolase, family 77 "; GO:0004134,GO:0010297 NbS00015190g0001.1 protein NbS00000877g0012.1 protein NbS00050263g0002.1 protein NbS00002086g0004.1 protein NbS00002086g0006.1 protein NbS00044787g0005.1 protein ; (*GB) gi|224126327|ref|XP_002319811.1| (e_value=8e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54750.1 (e_value=4e-19) | Symbols: | Transport protein particle (TRAPP) component | chr5:22242080-22243477 FORWARD LENGTH=186;; (*ITAG) Solyc10g006490.2.1 (e_value=2e-23) genomic_reference:SL2.40ch10 gene_region:1075550-1079615 transcript_region:SL2.40ch10:1075550..1079615+ go_terms:GO:0042802 functional_description:"Trafficking protein particle complex subunit 3 (AHRD V1 ***- B6T6G9_MAIZE); contains Interpro domain(s) IPR016721 TRAPP I complex, Bet3 "; GO:0042802 NbS00036560g0001.1 protein NbS00015672g0003.1 protein NbC26128803g0001.1 protein ; (*GB) gi|29893064|emb|CAC83577.2| (e_value=9e-54) vacuolar invertase [Nicotiana tabacum];; (*SWP) sp|P93761|INV1_CAPAN (e_value=1e-31) Acid beta-fructofuranosidase AIV-18 OS=Capsicum annuum PE=2 SV=1;; (*ITAG) Solyc03g083910.2.1 (e_value=5e-29) genomic_reference:SL2.40ch03 gene_region:47397595-47401871 transcript_region:SL2.40ch03:47397595..47401871- go_terms:GO:0004553 functional_description:"Acid beta-fructofuranosidase (AHRD V1 **-- Q575T1_WHEAT); contains Interpro domain(s) IPR001362 Glycoside hydrolase, family 32 "; GO:0004553 NbS00031881g0011.1 protein NbS00031881g0009.1 protein NbS00011705g0005.1 protein NbS00028744g0003.1 protein NbS00005257g0002.1 protein NbS00030404g0003.1 protein NbS00004588g0002.1 protein NbS00004588g0003.1 protein NbS00037884g0003.1 protein NbS00001440g0019.1 protein ; (*GB) gi|357455487|ref|XP_003598024.1| (e_value=8e-23) hypothetical protein MTR_3g005410 [Medicago truncatula];; (*SWP) sp|Q9FVW3|Y1399_ARATH (e_value=3e-22) Probable esterase At1g33990 OS=Arabidopsis thaliana GN=At1g33990 PE=1 SV=1;; (*TAIR) AT1G33990.1 (e_value=2e-23) | Symbols: ATMES14, MES14 | methyl esterase 14 | chr1:12355909-12357894 FORWARD LENGTH=348;; (*ITAG) Solyc06g064870.2.1 (e_value=6e-26) genomic_reference:SL2.40ch06 gene_region:36827493-36832143 transcript_region:SL2.40ch06:36827493..36832143+ go_terms:GO:0016787 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 **-* D7LXY6_ARALY); contains Interpro domain(s) IPR000073 Alpha/beta hydrolase fold-1 "; GO:0016787 NbS00001440g0007.1 protein NbS00031949g0002.1 protein NbS00009960g0003.1 protein NbS00009960g0009.1 protein NbS00015397g0003.1 protein ; (*GB) gi|225434443|ref|XP_002273069.1| (e_value=6e-80) PREDICTED: N-alpha-acetyltransferase 25, NatB auxiliary subunit [Vitis vinifera];; (*TAIR) AT5G58450.1 (e_value=2e-65) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065;; (*ITAG) Solyc09g057910.2.1 (e_value=3e-123) genomic_reference:SL2.40ch09 gene_region:47817635-47838635 transcript_region:SL2.40ch09:47817635..47838635+ go_terms:GO:0005488 functional_description:"N-alpha-acetyltransferase 25, NatB auxiliary subunit (AHRD V1 **-- NAA25_HUMAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00029657g0003.1 protein NbS00029657g0004.1 protein NbS00010078g0003.1 protein ; (*ITAG) Solyc02g093780.1.1 (e_value=5e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:49078498-49079635 transcript_region:SL2.40ch02:49078498..49079635+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017530g0002.1 protein NbS00017530g0003.1 protein NbS00009713g0002.1 protein NbS00012312g0002.1 protein NbS00054532g0006.1 protein NbC25062241g0001.1 protein ; (*GB) gi|224114137|ref|XP_002316677.1| (e_value=5e-29) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SXB4|Y1130_ARATH (e_value=9e-24) G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 OS=Arabidopsis thaliana GN=At1g11300 PE=2 SV=1;; (*TAIR) AT1G11300.1 (e_value=7e-25) | Symbols: | protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding | chr1:3794389-3800719 FORWARD LENGTH=1650;; (*ITAG) Solyc04g058110.2.1 (e_value=3e-46) genomic_reference:SL2.40ch04 gene_region:54372770-54376223 transcript_region:SL2.40ch04:54372770..54376223+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine-protein kinase receptor (AHRD V1 **** B6U2B7_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00008298g0008.1 protein NbS00008512g0012.1 protein NbS00008512g0010.1 protein ; (*GB) gi|359485959|ref|XP_002267672.2| (e_value=2e-38) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera];; (*SWP) sp|C0LGH3|Y5614_ARATH (e_value=4e-29) Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2;; (*TAIR) AT1G56140.1 (e_value=3e-30) | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:21001708-21007725 REVERSE LENGTH=1033;; (*ITAG) Solyc07g066550.2.1 (e_value=5e-57) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00032954g0004.1 protein NbS00051702g0003.1 protein NbS00051702g0005.1 protein NbS00002859g0007.1 protein NbS00046436g0002.1 protein NbS00020669g0002.1 protein NbS00039520g0004.1 protein NbS00021288g0005.1 protein NbS00026138g0005.1 protein NbS00026138g0006.1 protein ; (*ITAG) Solyc04g012030.2.1 (e_value=1e-18) genomic_reference:SL2.40ch04 gene_region:4361229-4366187 transcript_region:SL2.40ch04:4361229..4366187+ go_terms:GO:0005515,GO:0019706 functional_description:"Palmitoyltransferase PFA4 (AHRD V1 *-*- PFA4_USTMA); contains Interpro domain(s) IPR001594 Zinc finger, DHHC-type "; GO:0005515,GO:0019706 NbS00026138g0007.1 protein NbS00044711g0004.1 protein NbC24685187g0001.1 protein ; (*GB) gi|225434648|ref|XP_002279568.1| (e_value=2e-44) PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Vitis vinifera];; (*SWP) sp|A6ZW78|GPI3_YEAS7 (e_value=3e-23) Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit OS=Saccharomyces cerevisiae (strain YJM789) GN=SPT14 PE=3 SV=1;; (*TAIR) AT3G45100.2 (e_value=2e-42) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=2e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00049843g0007.1 protein NbS00035480g0003.1 protein ; (*GB) gi|350534980|ref|NP_001234681.1| (e_value=3e-34) sulfite oxidase [Solanum lycopersicum];; (*SWP) sp|Q9S850|SUOX_ARATH (e_value=1e-30) Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1;; (*TAIR) AT3G01910.1 (e_value=7e-32) | Symbols: SOX, AT-SO, AtSO | sulfite oxidase | chr3:314919-317274 REVERSE LENGTH=393;; (*ITAG) Solyc02g094120.2.1 (e_value=5e-37) genomic_reference:SL2.40ch02 gene_region:49329238-49336140 transcript_region:SL2.40ch02:49329238..49336140- go_terms:GO:0008482 functional_description:"Sulfite oxidase (AHRD V1 **** A5H1Q7_SOLLC); contains Interpro domain(s) IPR000572 Oxidoreductase, molybdopterin binding "; GO:0008482 NbC24210475g0001.1 protein ; (*GB) gi|255539677|ref|XP_002510903.1| (e_value=5e-32) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G51670.1 (e_value=2e-30) | Symbols: | Protein of unknown function (DUF668) | chr5:20993560-20995096 FORWARD LENGTH=474;; (*ITAG) Solyc03g007090.1.1 (e_value=7e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:1644669-1646105 transcript_region:SL2.40ch03:1644669..1646105- functional_description:"At5g51670-like protein (Fragment) (AHRD V1 *-*- C0JEX1_9BRAS); contains Interpro domain(s) IPR007700 Protein of unknown function DUF668 "; NbS00014586g0005.1 protein NbS00014586g0009.1 protein NbC26143295g0001.1 protein ; (*GB) gi|225430525|ref|XP_002285573.1| (e_value=2e-28) PREDICTED: transmembrane protein 85 [Vitis vinifera];; (*TAIR) AT5G10780.2 (e_value=5e-22) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | chr5:3408422-3409784 FORWARD LENGTH=187;; (*ITAG) Solyc08g006650.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:1236672-1242556 transcript_region:SL2.40ch08:1236672..1242556- functional_description:"Transmembrane protein 85 (AHRD V1 **-- B2W047_PYRTR); contains Interpro domain(s) IPR009445 Protein of unknown function DUF1077 "; NbS00005672g0013.1 protein NbS00002808g0015.1 protein NbS00002808g0019.1 protein NbS00002808g0009.1 protein NbS00004150g0006.1 protein NbC23482046g0002.1 protein ; (*ITAG) Solyc12g068070.1.1 (e_value=1e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:54518644-54522087 transcript_region:SL2.40ch12:54518644..54522087- functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00013170g0009.1 protein NbS00035170g0002.1 protein ; (*ITAG) Solyc12g094650.1.1 (e_value=3e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00029904g0003.1 protein NbS00044895g0003.1 protein NbS00011618g0002.1 protein NbS00001907g0004.1 protein NbS00001907g0005.1 protein NbS00001907g0006.1 protein NbS00017057g0003.1 protein NbS00047365g0004.1 protein NbS00016938g0008.1 protein NbS00040763g0001.1 protein NbS00040763g0002.1 protein ; (*GB) gi|225441549|ref|XP_002281113.1| (e_value=1e-34) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q9M2F9|RH52_ARATH (e_value=3e-33) DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1;; (*TAIR) AT3G58570.1 (e_value=2e-34) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21657099-21660352 FORWARD LENGTH=646;; (*ITAG) Solyc01g005960.2.1 (e_value=4e-36) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00007101g0006.1 protein NbS00031459g0003.1 protein NbS00031459g0005.1 protein NbS00037352g0003.1 protein NbS00006930g0006.1 protein ; (*ITAG) Solyc03g112950.2.1 (e_value=2e-40) genomic_reference:SL2.40ch03 gene_region:57309377-57340774 transcript_region:SL2.40ch03:57309377..57340774+ go_terms:GO:0016773 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- D2V0W7_NAEGR); contains Interpro domain(s) IPR015519 Ataxia-Telangiectasia Mutated "; GO:0016773 NbC25467718g0001.1 protein ; (*ITAG) Solyc04g078300.2.1 (e_value=7e-29) genomic_reference:SL2.40ch04 gene_region:60651560-60654995 transcript_region:SL2.40ch04:60651560..60654995+ go_terms:GO:0003677 functional_description:"MADS-box transcription factor 1 (AHRD V1 *-*- D1MFS6_HEVBR); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0003677 NbS00009849g0012.1 protein NbS00009849g0009.1 protein NbS00027850g0009.1 protein NbS00027850g0010.1 protein NbS00008818g0006.1 protein NbS00018956g0009.1 protein NbS00001381g0002.1 protein ; (*GB) gi|297738520|emb|CBI27765.3| (e_value=2e-43) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=1e-36) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=9e-38) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g042430.1.1 (e_value=3e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:52901895-52904375 transcript_region:SL2.40ch07:52901895..52904375+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase (AHRD V1 **** C1GPZ2_PARBA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00031300g0004.1 protein NbS00033188g0002.1 protein NbS00017272g0003.1 protein ; (*ITAG) Solyc11g056500.1.1 (e_value=3e-25) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43173486-43174103 transcript_region:SL2.40ch11:43173486..43174103- functional_description:"Photosystem Q(B) protein (AHRD V1 *-*- B6VJV1_VITVI)"; NbS00011226g0001.1 protein NbS00031176g0001.1 protein NbS00035255g0001.1 protein NbS00018051g0009.1 protein NbS00018051g0010.1 protein NbS00032304g0002.1 protein NbS00030519g0013.1 protein NbS00030519g0017.1 protein ; (*GB) gi|224105827|ref|XP_002313946.1| (e_value=5e-34) predicted protein [Populus trichocarpa];; (*TAIR) AT5G64510.1 (e_value=2e-35) | Symbols: TIN1 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:25784592-25786152 FORWARD LENGTH=424;; (*ITAG) Solyc01g106470.2.1 (e_value=8e-40) genomic_reference:SL2.40ch01 gene_region:86119230-86122313 transcript_region:SL2.40ch01:86119230..86122313+ functional_description:"Genomic DNA chromosome 5 P1 clone MUB3 (AHRD V1 *-*- Q9FLG7_ARATH)"; NbS00027688g0005.1 protein NbS00027688g0009.1 protein ; (*ITAG) Solyc03g114690.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:58641516-58647305 transcript_region:SL2.40ch03:58641516..58647305- go_terms:GO:0000166 functional_description:"Wd-40 repeat-containing protein (AHRD V1 *--- B8C836_THAPS); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00001386g0004.1 protein NbS00006506g0012.1 protein ; (*ITAG) Solyc03g043810.1.1 (e_value=3e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:11444579-11449274 transcript_region:SL2.40ch03:11444579..11449274- go_terms:GO:0006355 functional_description:"Unknown Protein (AHRD V1)"; GO:0006355 NbS00015854g0011.1 protein NbS00004063g0007.1 protein NbS00004063g0008.1 protein NbS00031947g0001.1 protein NbS00054694g0003.1 protein NbS00046062g0002.1 protein ; (*GB) gi|27728149|gb|AAN15319.1| (e_value=1e-19) isoamylase isoform 3 [Solanum tuberosum];; (*SWP) sp|Q9M0S5|ISOA3_ARATH (e_value=3e-18) Isoamylase 3, chloroplastic OS=Arabidopsis thaliana GN=ISA3 PE=1 SV=2;; (*TAIR) AT4G09020.1 (e_value=2e-19) | Symbols: ATISA3, ISA3 | isoamylase 3 | chr4:5784099-5788839 FORWARD LENGTH=764;; (*ITAG) Solyc06g009220.2.1 (e_value=3e-22) genomic_reference:SL2.40ch06 gene_region:3155576-3182364 transcript_region:SL2.40ch06:3155576..3182364+ go_terms:GO:0004556,GO:0019156 functional_description:"Glycogen debranching enzyme (AHRD V1 ***- B1R1G0_CLOBU); contains Interpro domain(s) IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region "; GO:0004556,GO:0019156 NbS00046062g0003.1 protein NbS00007002g0003.1 protein NbS00015069g0009.1 protein ; (*GB) gi|147838519|emb|CAN69855.1| (e_value=3e-27) hypothetical protein VITISV_041230 [Vitis vinifera]; NbS00009449g0006.1 protein NbS00029032g0003.1 protein NbS00010486g0003.1 protein ; (*GB) gi|254692066|emb|CBA10127.1| (e_value=4e-28) non-cell-autonomous protein pathway [Nicotiana benthamiana];; (*ITAG) Solyc02g087780.2.1 (e_value=5e-32) genomic_reference:SL2.40ch02 gene_region:44655715-44658215 transcript_region:SL2.40ch02:44655715..44658215+ go_terms:GO:0005515,GO:0004034 functional_description:"Aldose-1-epimerase-like protein (AHRD V1 **** O48971_TOBAC); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "; GO:0005515,GO:0004034 NbS00013054g0002.1 protein NbS00041866g0102.1 protein NbS00041866g0104.1 protein NbS00019715g0003.1 protein NbS00023998g0002.1 protein NbS00023459g0004.1 protein ; (*ITAG) Solyc10g077140.1.1 (e_value=1e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:59333609-59337155 transcript_region:SL2.40ch10:59333609..59337155+ go_terms:GO:0008270 functional_description:"cDNA clone J013074B07 full insert sequence (AHRD V1 *--- B7ECA1_ORYSJ); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00023459g0005.1 protein NbS00045774g0002.1 protein NbS00006019g0002.1 protein ; (*ITAG) Solyc05g012390.2.1 (e_value=4e-25) genomic_reference:SL2.40ch05 gene_region:5649249-5653665 transcript_region:SL2.40ch05:5649249..5653665+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KQQ2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00006019g0004.1 protein NbS00055217g0005.1 protein NbS00013165g0004.1 protein ; (*GB) gi|7594580|emb|CAB88075.1| (e_value=3e-23) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT4G16765.1 (e_value=4e-26) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr4:9429974-9431791 REVERSE LENGTH=247;; (*ITAG) Solyc06g060800.2.1 (e_value=1e-20) genomic_reference:SL2.40ch06 gene_region:35217666-35228843 transcript_region:SL2.40ch06:35217666..35228843- go_terms:GO:0045543 functional_description:"Gibberellin 2-beta-dioxygenase (AHRD V1 **-* D7FYW8_ECTSI); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00026337g0108.1 protein NbS00026337g0109.1 protein NbS00041566g0002.1 protein NbS00039168g0002.1 protein ; (*ITAG) Solyc02g083730.2.1 (e_value=4e-24) genomic_reference:SL2.40ch02 gene_region:41605157-41606603 transcript_region:SL2.40ch02:41605157..41606603- go_terms:GO:0004792 functional_description:"Thiosulfate sulfurtransferase rhodanese domain protein (AHRD V1 **** A5ID08_LEGPC); contains Interpro domain(s) IPR001763 Rhodanese-like "; GO:0004792 NbS00010366g0101.1 protein NbS00010366g0205.1 protein NbS00010366g0314.1 protein NbS00010366g0308.1 protein NbS00010366g0309.1 protein NbS00011216g0008.1 protein NbS00007694g0008.1 protein NbS00007694g0009.1 protein NbS00040639g0003.1 protein NbS00003256g0010.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=4e-13) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbS00030226g0001.1 protein ; (*GB) gi|356576803|ref|XP_003556519.1| (e_value=4e-27) PREDICTED: uncharacterized protein LOC100789542 [Glycine max];; (*TAIR) AT3G05550.1 (e_value=2e-26) | Symbols: | Hypoxia-responsive family protein | chr3:1612860-1613748 FORWARD LENGTH=97;; (*ITAG) Solyc01g066720.2.1 (e_value=4e-28) genomic_reference:SL2.40ch01 gene_region:67264660-67267017 transcript_region:SL2.40ch01:67264660..67267017- functional_description:"Hypoxia induced protein conserved region containing protein (AHRD V1 ***- B6UCX6_MAIZE); contains Interpro domain(s) IPR007667 Hypoxia induced protein conserved region "; NbS00056722g0003.1 protein ; (*ITAG) Solyc01g088020.2.1 (e_value=8e-20) genomic_reference:SL2.40ch01 gene_region:74630101-74643687 transcript_region:SL2.40ch01:74630101..74643687+ go_terms:GO:0048306 functional_description:"Protein transport protein sec31 (AHRD V1 **-- C8V1I6_EMENI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0048306 NbS00032823g0005.1 protein NbS00030555g0006.1 protein NbS00048587g0001.1 protein ; (*GB) gi|351724407|ref|NP_001235265.1| (e_value=2e-18) uncharacterized protein LOC100527636 [Glycine max];; (*SWP) sp|Q9CA64|BH135_ARATH (e_value=3e-19) Transcription factor bHLH135 OS=Arabidopsis thaliana GN=BHLH135 PE=1 SV=1;; (*TAIR) AT1G74500.1 (e_value=2e-20) | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 | chr1:27998298-27998668 REVERSE LENGTH=93;; (*ITAG) Solyc06g070910.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:39942268-39944739 transcript_region:SL2.40ch06:39942268..39944739+ go_terms:GO:0003700 functional_description:"Transcription factor style2.1 (AHRD V1 **-* B6CG45_SOLPN); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0003700 NbS00019431g0009.1 protein NbS00008036g0004.1 protein NbS00032588g0001.1 protein NbS00020781g0001.1 protein ; (*ITAG) Solyc01g086810.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:73512780-73515962 transcript_region:SL2.40ch01:73512780..73515962- go_terms:GO:0005515,GO:0000166 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00038009g0005.1 protein NbS00038009g0008.1 protein NbS00017432g0006.1 protein ; (*ITAG) Solyc09g011030.2.1 (e_value=8e-16) genomic_reference:SL2.40ch09 gene_region:4368272-4373182 transcript_region:SL2.40ch09:4368272..4373182- go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- C8V0S6_EMENI); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00000078g0003.1 protein NbS00006101g0004.1 protein NbS00006101g0005.1 protein ; (*GB) gi|297734479|emb|CBI15726.3| (e_value=7e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G09520.1 (e_value=2e-29) | Symbols: | Cofactor-independent phosphoglycerate mutase | chr4:6024970-6026751 REVERSE LENGTH=492;; (*ITAG) Solyc06g005370.2.1 (e_value=3e-33) genomic_reference:SL2.40ch06 gene_region:381039-384707 transcript_region:SL2.40ch06:381039..384707+ go_terms:GO:0046872,GO:0008152 functional_description:"Predicted 2 3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V1 ***- D9PU88_METTM); contains Interpro domain(s) IPR019304 2,3-bisphosphoglycerate-independent phosphoglycerate mutase "; GO:0046872,GO:0008152 NbS00008140g0005.1 protein NbS00000590g0005.1 protein NbS00000590g0007.1 protein NbS00059792g0007.1 protein NbS00011336g0001.1 protein ; (*GB) gi|224099675|ref|XP_002311574.1| (e_value=4e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G11920.1 (e_value=4e-30) | Symbols: | glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=630;; (*ITAG) Solyc01g008130.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:2274518-2283875 transcript_region:SL2.40ch01:2274518..2283875+ go_terms:GO:0023034,GO:0045454 functional_description:"DEP domain-containing protein 1B (AHRD V1 *--- DEP1B_HUMAN); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00014580g0012.1 protein ; (*GB) gi|356501701|ref|XP_003519662.1| (e_value=1e-34) PREDICTED: uncharacterized protein LOC100794226 [Glycine max]; NbS00014412g0006.1 protein NbS00014412g0008.1 protein NbS00031461g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=2e-15) hypothetical protein [Nicotiana tabacum]; NbS00005247g0008.1 protein NbS00010910g0002.1 protein NbS00014858g0004.1 protein NbS00003354g0004.1 protein NbS00003354g0005.1 protein NbS00007165g0003.1 protein NbS00026516g0004.1 protein NbS00026516g0006.1 protein NbS00026516g0007.1 protein NbS00026516g0008.1 protein NbS00026516g0010.1 protein NbS00003295g0006.1 protein NbS00012869g0003.1 protein NbS00018298g0012.1 protein NbS00059141g0003.1 protein ; (*GB) gi|296082981|emb|CBI22282.3| (e_value=8e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G29280.1 (e_value=2e-21) | Symbols: | unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11236705-11237947 REVERSE LENGTH=178;; (*ITAG) Solyc03g013250.2.1 (e_value=4e-27) genomic_reference:SL2.40ch03 gene_region:3978727-3980731 transcript_region:SL2.40ch03:3978727..3980731- functional_description:"Genomic DNA chromosome 3 P1 clone MMF24 (AHRD V1 ***- Q9LHJ6_ARATH)"; NbS00036198g0005.1 protein NbS00036198g0007.1 protein NbS00037999g0005.1 protein NbS00032986g0004.1 protein NbS00032986g0005.1 protein ; (*GB) gi|255555547|ref|XP_002518810.1| (e_value=8e-44) electron transporter, putative [Ricinus communis];; (*TAIR) AT3G11920.1 (e_value=4e-25) | Symbols: | glutaredoxin-related | chr3:3772311-3774887 FORWARD LENGTH=630;; (*ITAG) Solyc01g008130.2.1 (e_value=6e-66) genomic_reference:SL2.40ch01 gene_region:2274518-2283875 transcript_region:SL2.40ch01:2274518..2283875+ go_terms:GO:0023034,GO:0045454 functional_description:"DEP domain-containing protein 1B (AHRD V1 *--- DEP1B_HUMAN); contains Interpro domain(s) IPR006869 Protein of unknown function DUF547 "; GO:0023034,GO:0045454 NbS00003407g0104.1 protein NbS00003407g0105.1 protein NbS00003407g0107.1 protein NbS00006545g0006.1 protein ; (*GB) gi|147794338|emb|CAN76000.1| (e_value=3e-17) hypothetical protein VITISV_019164 [Vitis vinifera]; NbS00043745g0005.1 protein NbS00012874g0005.1 protein ; (*GB) gi|310656732|gb|ADP02172.1| (e_value=4e-51) unknown [Triticum aestivum];; (*TAIR) AT5G19820.1 (e_value=4e-30) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=1e-29) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00014929g0009.1 protein NbS00014929g0010.1 protein NbS00001466g0003.1 protein NbS00021899g0005.1 protein ; (*GB) gi|255556614|ref|XP_002519341.1| (e_value=3e-16) Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis];; (*TAIR) AT1G48310.1 (e_value=2e-14) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=1e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00027031g0002.1 protein NbS00002222g0101.1 protein NbS00002222g0102.1 protein NbS00005288g0006.1 protein NbS00005288g0103.1 protein NbS00025436g0005.1 protein ; (*GB) gi|255544900|ref|XP_002513511.1| (e_value=1e-39) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|A8MRC7|B3GT2_ARATH (e_value=5e-30) Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1;; (*TAIR) AT1G05170.1 (e_value=4e-32) | Symbols: | Galactosyltransferase family protein | chr1:1491460-1493931 REVERSE LENGTH=404;; (*ITAG) Solyc11g042810.1.1 (e_value=1e-71) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34272474-34274189 transcript_region:SL2.40ch11:34272474..34274189+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 ***- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00025436g0007.1 protein NbS00012515g0016.1 protein NbS00003286g0004.1 protein NbS00054927g0001.1 protein NbS00023863g0002.1 protein NbS00013787g0005.1 protein NbS00009350g0001.1 protein ; (*ITAG) Solyc02g079550.1.1 (e_value=7e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38652515-38655082 transcript_region:SL2.40ch02:38652515..38655082+ go_terms:GO:0019199,GO:0004674 functional_description:"Serine/threonine kinase receptor (AHRD V1 **** Q7DMS5_BRANA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019199,GO:0004674 NbS00038197g0001.1 protein ; (*GB) gi|297739295|emb|CBI28946.3| (e_value=2e-38) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0J9X2|ROC2_ORYSJ (e_value=7e-36) Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1;; (*TAIR) AT1G05230.3 (e_value=1e-32) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=719;; (*ITAG) Solyc00g099580.1.1 (e_value=7e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:15730751-15732746 transcript_region:SL2.40ch00:15730751..15732746- go_terms:GO:0003840,GO:0006355,GO:0045449 functional_description:"Gamma-glutamyltranspeptidase (AHRD V1 ***- D4Z6K6_SPHJU); contains Interpro domain(s) IPR000101 Gamma-glutamyltranspeptidase "; GO:0003840,GO:0006355,GO:0045449 NbS00039819g0003.1 protein NbS00027567g0002.1 protein ; (*GB) gi|224129976|ref|XP_002328850.1| (e_value=3e-44) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FHK0|SKI31_ARATH (e_value=3e-16) F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1;; (*TAIR) AT5G45360.1 (e_value=2e-17) | Symbols: | F-box family protein | chr5:18384783-18386670 REVERSE LENGTH=316;; (*ITAG) Solyc08g075380.2.1 (e_value=6e-48) genomic_reference:SL2.40ch08 gene_region:56680117-56686385 transcript_region:SL2.40ch08:56680117..56686385- functional_description:"F-box protein (AHRD V1 ***- A9Z0N6_PONTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00033431g0001.1 protein ; (*GB) gi|255556614|ref|XP_002519341.1| (e_value=3e-18) Chromatin remodelling complex ATPase chain isw-1, putative [Ricinus communis];; (*TAIR) AT1G48310.1 (e_value=7e-17) | Symbols: CHR18, CHA18 | chromatin remodeling factor18 | chr1:17848620-17853731 REVERSE LENGTH=673;; (*ITAG) Solyc12g098860.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00036476g0004.1 protein ; (*GB) gi|297736528|emb|CBI25399.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9ZUW3|PP172_ARATH (e_value=4e-129) Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1;; (*TAIR) AT2G27610.1 (e_value=3e-130) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11783927-11786533 REVERSE LENGTH=868;; (*ITAG) Solyc01g091610.1.1 (e_value=2e-132) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:76952592-76957268 transcript_region:SL2.40ch01:76952592..76957268+ go_terms:GO:0005488 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LS65_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0005488 NbS00005332g0005.1 protein ; (*GB) gi|147799089|emb|CAN72563.1| (e_value=6e-19) hypothetical protein VITISV_011377 [Vitis vinifera];; (*ITAG) Solyc03g095210.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:49620743-49622751 transcript_region:SL2.40ch03:49620743..49622751- go_terms:GO:0004872 functional_description:"WD repeat-containing protein 5 homolog (AHRD V1 *--- WDR5_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0004872 NbS00005332g0006.1 protein NbS00014721g0003.1 protein ; (*GB) gi|224114744|ref|XP_002316844.1| (e_value=1e-17) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g062160.2.1 (e_value=3e-26) genomic_reference:SL2.40ch07 gene_region:62191788-62196800 transcript_region:SL2.40ch07:62191788..62196800+ go_terms:GO:0005515,GO:0003700 functional_description:"Zinc finger protein CONSTANS-LIKE 1 (AHRD V1 *--- COL1_ARATH); contains Interpro domain(s) IPR000315 Zinc finger, B-box "; GO:0005515,GO:0003700 NbS00011329g0003.1 protein NbS00032243g0012.1 protein NbS00032243g0007.1 protein NbS00000623g0004.1 protein NbS00004276g0004.1 protein NbS00000693g0002.1 protein ; (*GB) gi|255576152|ref|XP_002528970.1| (e_value=7e-15) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|P92946|SUT22_ARATH (e_value=1e-15) Sulfate transporter 2.2 OS=Arabidopsis thaliana GN=SULTR2;2 PE=1 SV=3;; (*TAIR) AT1G77990.1 (e_value=9e-17) | Symbols: AST56, SULTR2;2 | STAS domain / Sulfate transporter family | chr1:29317965-29323249 REVERSE LENGTH=677;; (*ITAG) Solyc04g054730.2.1 (e_value=7e-21) genomic_reference:SL2.40ch04 gene_region:52246216-52251232 transcript_region:SL2.40ch04:52246216..52251232- go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00000693g0004.1 protein NbS00003904g0005.1 protein NbS00003904g0006.1 protein NbS00003904g0007.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000124g0104.1 protein NbS00022860g0005.1 protein NbS00022860g0007.1 protein ; (*GB) gi|386780450|dbj|BAM15222.1| (e_value=7e-16) poly(A)-binding protein [Nicotiana tabacum];; (*SWP) sp|P42731|PABP2_ARATH (e_value=2e-13) Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1;; (*TAIR) AT4G34110.1 (e_value=1e-14) | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629;; (*ITAG) Solyc12g088720.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62418023-62421876 transcript_region:SL2.40ch12:62418023..62421876+ go_terms:GO:0003676,GO:0003723,GO:0000166 functional_description:"Polyadenylate-binding protein 2 (AHRD V1 ***- B6U4M0_MAIZE); contains Interpro domain(s) IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4 "; GO:0003676,GO:0003723,GO:0000166 NbC23850965g0001.1 protein ; (*GB) gi|147807951|emb|CAN68728.1| (e_value=1e-33) hypothetical protein VITISV_033604 [Vitis vinifera];; (*TAIR) AT4G14990.1 (e_value=4e-30) | Symbols: | Topoisomerase II-associated protein PAT1 | chr4:8566259-8569511 REVERSE LENGTH=787;; (*ITAG) Solyc05g016240.2.1 (e_value=3e-53) genomic_reference:SL2.40ch05 gene_region:15260801-15268723 transcript_region:SL2.40ch05:15260801..15268723- functional_description:"Genomic DNA chromosome 3 P1 clone MMP21 (AHRD V1 **-- Q9LHJ0_ARATH)"; NbS00027687g0003.1 protein NbS00003161g0005.1 protein ; (*GB) gi|359485959|ref|XP_002267672.2| (e_value=5e-14) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56130-like [Vitis vinifera];; (*ITAG) Solyc07g066550.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:65159549-65166622 transcript_region:SL2.40ch07:65159549..65166622- go_terms:GO:0005515 functional_description:"Receptor like kinase, RLK"; GO:0005515 NbS00011754g0001.1 protein NbS00016106g0011.1 protein NbS00011684g0006.1 protein NbS00011684g0106.1 protein NbS00011684g0108.1 protein NbS00057237g0005.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-32) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc12g042420.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43129413-43132685 transcript_region:SL2.40ch12:43129413..43132685- go_terms:GO:0008270 functional_description:"Mutator-like transposase 53847-56139 (AHRD V1 *--- Q9C8V7_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00012603g0004.1 protein ; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-15) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc10g044500.1.1 (e_value=2e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00036574g0001.1 protein NbS00008902g0010.1 protein NbS00011742g0002.1 protein NbS00011742g0004.1 protein NbS00028085g0005.1 protein NbS00054136g0008.1 protein NbS00039552g0004.1 protein NbS00039552g0007.1 protein NbS00039552g0106.1 protein NbS00039552g0107.1 protein NbS00022857g0004.1 protein NbS00030558g0003.1 protein NbC24502731g0001.1 protein ; (*ITAG) Solyc11g007620.1.1 (e_value=3e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:1868423-1869691 transcript_region:SL2.40ch11:1868423..1869691- functional_description:"F-box domain containing protein (AHRD V1 ***- B6TYF0_MAIZE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00027559g0005.1 protein NbS00027559g0006.1 protein NbS00009232g0001.1 protein NbC24394706g0001.1 protein ; (*GB) gi|374095611|gb|AEY85033.1| (e_value=1e-35) xanthine dehydrogenase [Camellia sinensis];; (*SWP) sp|Q8GUQ8|XDH1_ARATH (e_value=5e-31) Xanthine dehydrogenase 1 OS=Arabidopsis thaliana GN=XDH1 PE=1 SV=1;; (*TAIR) AT4G34890.1 (e_value=4e-32) | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 | chr4:16618736-16624983 REVERSE LENGTH=1361;; (*ITAG) Solyc11g065920.1.1 (e_value=3e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48577085-48591136 transcript_region:SL2.40ch11:48577085..48591136- go_terms:GO:0009055,GO:0051536,GO:0055114,GO:0050660 functional_description:"Xanthine dehydrogenase/oxidase (AHRD V1 ***- A9YL93_RABIT); contains Interpro domain(s) IPR016208 Aldehyde oxidase/xanthine dehydrogenase "; GO:0009055,GO:0051536,GO:0055114,GO:0050660 NbS00001427g0008.1 protein NbS00021331g0007.1 protein NbS00014031g0002.1 protein NbS00032448g0005.1 protein NbS00002360g0006.1 protein NbC23574698g0001.1 protein ; (*GB) gi|297719757|ref|NP_001172240.1| (e_value=4e-25) Os01g0225200 [Oryza sativa Japonica Group];; (*TAIR) AT5G39960.1 (e_value=6e-22) | Symbols: | GTP binding;GTP binding | chr5:15994195-15996820 FORWARD LENGTH=621;; (*ITAG) Solyc10g005910.2.1 (e_value=2e-29) genomic_reference:SL2.40ch10 gene_region:704986-709412 transcript_region:SL2.40ch10:704986..709412- go_terms:GO:0043022,GO:0003924 functional_description:"GTP-binding protein engA (AHRD V1 **** A9TY56_PHYPA); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0043022,GO:0003924 NbS00014126g0102.1 protein NbS00014126g0104.1 protein NbS00018718g0008.1 protein NbS00004694g0005.1 protein ; (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-15) Polyprotein, 3'-partial, putative [Solanum demissum];; (*ITAG) Solyc01g028970.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:35401667-35403682 transcript_region:SL2.40ch01:35401667..35403682- go_terms:GO:0008270 functional_description:"Retrotransposon gag protein (AHRD V1 ***- Q0KIS1_SOLDE); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; GO:0008270 NbS00025811g0003.1 protein NbS00024092g0005.1 protein NbS00026104g0001.1 protein NbS00026104g0002.1 protein NbS00005898g0002.1 protein ; (*GB) gi|62002541|gb|AAX58755.1| (e_value=2e-56) WD-40 repeat domain protein [Physcomitrella patens];; (*SWP) sp|O22607|MSI4_ARATH (e_value=2e-46) WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3;; (*TAIR) AT2G19520.1 (e_value=1e-47) | Symbols: FVE, ACG1, MSI4, NFC4, NFC04, ATMSI4 | Transducin family protein / WD-40 repeat family protein | chr2:8456006-8459235 FORWARD LENGTH=507;; (*ITAG) Solyc03g121580.2.1 (e_value=6e-51) genomic_reference:SL2.40ch03 gene_region:63709230-63720426 transcript_region:SL2.40ch03:63709230..63720426- go_terms:GO:0046872,GO:0042393 functional_description:"Histone-binding protein RBBP7 (AHRD V1 **-* B5X3G4_SALSA); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0046872,GO:0042393 NbS00005898g0003.1 protein NbS00007548g0001.1 protein ; (*GB) gi|225447193|ref|XP_002277180.1| (e_value=2e-42) PREDICTED: protein-tyrosine-phosphatase IBR5 [Vitis vinifera];; (*SWP) sp|Q84JU4|IBR5_ARATH (e_value=3e-41) Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1;; (*TAIR) AT2G04550.1 (e_value=2e-42) | Symbols: IBR5, DSPTP1E | indole-3-butyric acid response 5 | chr2:1588538-1589838 FORWARD LENGTH=257;; (*ITAG) Solyc12g005990.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:608257-613415 transcript_region:SL2.40ch12:608257..613415+ go_terms:GO:0016311,GO:0006470 functional_description:"Dual specificity protein phosphatase 4 (AHRD V1 ***- B6U4B9_MAIZE); contains Interpro domain(s) IPR020422 Dual specificity phosphatase, subgroup, catalytic domain "; GO:0016311,GO:0006470 NbS00033135g0003.1 protein NbS00033463g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-33) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00018534g0009.1 protein ; (*GB) gi|302788846|ref|XP_002976192.1| (e_value=2e-11) hypothetical protein SELMODRAFT_443104 [Selaginella moellendorffii];; (*ITAG) Solyc07g049250.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:56846363-56847250 transcript_region:SL2.40ch07:56846363..56847250- go_terms:GO:0005634 functional_description:"Histone deacetylase complex SIN3 component (AHRD V1 *-*- A9TE35_PHYPA); contains Interpro domain(s) IPR003822 Paired amphipathic helix "; GO:0005634 NbS00036785g0003.1 protein NbS00045716g0005.1 protein ; (*GB) gi|49533765|gb|AAT66764.1| (e_value=2e-24) Putative anaphase promoting complex protein, identical [Solanum demissum];; (*ITAG) Solyc05g007750.2.1 (e_value=1e-26) genomic_reference:SL2.40ch05 gene_region:2213544-2221713 transcript_region:SL2.40ch05:2213544..2221713+ go_terms:GO:0004842 functional_description:"Anaphase promoting complex subunit 2 (AHRD V1 *-*- Q3U430_MOUSE); contains Interpro domain(s) IPR001373 Cullin, N-terminal "; GO:0004842 NbS00045716g0008.1 protein NbS00019401g0002.1 protein NbS00051533g0003.1 protein ; (*ITAG) Solyc01g066890.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:67532575-67533441 transcript_region:SL2.40ch01:67532575..67533441- functional_description:"Unknown Protein (AHRD V1)"; NbS00051533g0004.1 protein NbS00031551g0001.1 protein NbS00019236g0005.1 protein NbS00020113g0010.1 protein NbS00004254g0002.1 protein NbS00004254g0004.1 protein NbS00004254g0102.1 protein NbS00004254g0205.1 protein NbS00055700g0001.1 protein NbS00005895g0001.1 protein NbS00011338g0011.1 protein ; (*GB) gi|350535825|ref|NP_001234471.1| (e_value=3e-14) transcription factor IIIA [Solanum lycopersicum];; (*TAIR) AT1G72050.2 (e_value=4e-14) | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412;; (*ITAG) Solyc10g077110.1.1 (e_value=6e-17) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:59317232-59319574 transcript_region:SL2.40ch10:59317232..59319574+ go_terms:GO:0003676,GO:0005622 functional_description:"Zinc finger protein (AHRD V1 ***- Q16RV2_AEDAE); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0003676,GO:0005622 NbS00011338g0008.1 protein NbS00011338g0009.1 protein ; (*GB) gi|332801235|gb|AEE99259.1| (e_value=1e-33) anthocyanin 1-like protein [Nicotiana sylvestris];; (*SWP) sp|Q9FT81|TT8_ARATH (e_value=4e-22) Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2;; (*TAIR) AT4G09820.1 (e_value=3e-23) | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:6182067-6186261 FORWARD LENGTH=518;; (*ITAG) Solyc09g065100.1.1 (e_value=3e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58546874-58554328 transcript_region:SL2.40ch09:58546874..58554328+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005515,GO:0003700 NbS00004550g0003.1 protein NbS00004550g0005.1 protein ; (*ITAG) Solyc07g063790.1.1 (e_value=3e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:63364184-63364768 transcript_region:SL2.40ch07:63364184..63364768+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004550g0104.1 protein NbS00004550g0105.1 protein NbS00004550g0203.1 protein NbS00014422g0012.1 protein NbS00015813g0005.1 protein ; (*GB) gi|89111299|dbj|BAE80324.1| (e_value=3e-20) cyclin D3-1 [Camellia sinensis];; (*SWP) sp|P42753|CCD31_ARATH (e_value=1e-19) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=1e-20) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc04g078470.2.1 (e_value=2e-22) genomic_reference:SL2.40ch04 gene_region:60795941-60797791 transcript_region:SL2.40ch04:60795941..60797791- go_terms:GO:0004723 functional_description:"Cyclin D3-1 (AHRD V1 ***- Q2ABE7_CAMSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004723 NbS00031055g0002.1 protein NbS00009443g0005.1 protein NbS00009443g0007.1 protein NbS00009443g0008.1 protein NbS00018941g0002.1 protein ; (*GB) gi|359482115|ref|XP_003632713.1| (e_value=0.0) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9SVP7|PP307_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2;; (*TAIR) AT4G13650.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:7939611-7942898 REVERSE LENGTH=1064;; (*ITAG) Solyc02g079260.1.1 (e_value=0.0) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:38445499-38448782 transcript_region:SL2.40ch02:38445499..38448782- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00034022g0001.1 protein NbS00006167g0004.1 protein NbS00006167g0105.1 protein NbS00048403g0001.1 protein NbS00047144g0004.1 protein NbS00000285g0009.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=2e-13) hypothetical protein [Cucumis melo subsp. melo]; NbS00043749g0008.1 protein NbS00004282g0011.1 protein NbS00004282g0008.1 protein NbS00007814g0007.1 protein NbS00013321g0001.1 protein NbS00019004g0008.1 protein NbS00027166g0002.1 protein NbS00005431g0012.1 protein NbS00005431g0014.1 protein NbS00005431g0017.1 protein NbS00005431g0019.1 protein NbS00011196g0005.1 protein NbS00036264g0006.1 protein NbS00036264g0008.1 protein NbS00012238g0003.1 protein NbS00019849g0005.1 protein NbS00025154g0007.1 protein NbS00025154g0008.1 protein NbS00014493g0003.1 protein NbS00013543g0003.1 protein NbS00002870g0002.1 protein NbS00002870g0003.1 protein NbS00000997g0107.1 protein NbS00034651g0001.1 protein NbS00001438g0004.1 protein NbS00003078g0007.1 protein ; (*GB) gi|255539481|ref|XP_002510805.1| (e_value=1e-13) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc03g025900.2.1 (e_value=2e-61) genomic_reference:SL2.40ch03 gene_region:7694511-7700542 transcript_region:SL2.40ch03:7694511..7700542- go_terms:GO:0003824,GO:0006281 functional_description:"Flap structure-specific endonuclease (AHRD V1 *-*- A8NTE4_COPC7); contains Interpro domain(s) IPR006084 DNA repair protein (XPGC)/yeast Rad "; GO:0003824,GO:0006281 NbS00012208g0114.1 protein NbS00012208g0120.1 protein NbS00057002g0005.1 protein NbS00005385g0009.1 protein NbS00023999g0005.1 protein ; (*GB) gi|359474397|ref|XP_002266532.2| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100255681 [Vitis vinifera];; (*ITAG) Solyc08g078750.2.1 (e_value=9e-35) genomic_reference:SL2.40ch08 gene_region:59649917-59658463 transcript_region:SL2.40ch08:59649917..59658463- go_terms:GO:0008270 functional_description:"DEAD-box ATP-dependent RNA helicase 41 (AHRD V1 *-*- RH41_ORYSJ); contains Interpro domain(s) IPR007529 Zinc finger, HIT-type "; GO:0008270 NbS00004508g0006.1 protein NbS00004508g0010.1 protein NbS00005451g0106.1 protein NbS00007265g0007.1 protein ; (*ITAG) Solyc04g074620.1.1 (e_value=2e-14) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch04 gene_region:58157468-58157815 transcript_region:SL2.40ch04:58157468..58157815- functional_description:"Unknown Protein (AHRD V1)"; NbS00007265g0009.1 protein NbS00007265g0104.1 protein NbS00015554g0002.1 protein NbS00003206g0002.1 protein NbS00004155g0006.1 protein NbS00006952g0003.1 protein NbS00006952g0102.1 protein NbS00017596g0002.1 protein NbS00008942g0010.1 protein ; (*ITAG) Solyc11g039450.1.1 (e_value=4e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:23726518-23727177 transcript_region:SL2.40ch11:23726518..23727177+ functional_description:"Unknown Protein (AHRD V1)"; NbS00056350g0002.1 protein ; (*GB) gi|225424633|ref|XP_002282325.1| (e_value=1e-26) PREDICTED: uncharacterized protein LOC100245809 [Vitis vinifera];; (*TAIR) AT3G26380.1 (e_value=2e-18) | Symbols: | Melibiase family protein | chr3:9660140-9663145 FORWARD LENGTH=647;; (*ITAG) Solyc05g013720.2.1 (e_value=6e-56) genomic_reference:SL2.40ch05 gene_region:7017520-7023848 transcript_region:SL2.40ch05:7017520..7023848- go_terms:GO:0008152,GO:0005975 functional_description:"Alpha-galactosidase (AHRD V1 *-*- D4LCA1_9FIRM); contains Interpro domain(s) IPR013785 Aldolase-type TIM barrel "; GO:0008152,GO:0005975 NbS00013563g0011.1 protein NbS00025701g0009.1 protein NbC23901172g0001.1 protein ; (*GB) gi|224112273|ref|XP_002332802.1| (e_value=7e-54) glycosyltransferase [Populus trichocarpa];; (*SWP) sp|Q9LSG3|GAUT8_ARATH (e_value=9e-55) Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1;; (*TAIR) AT3G25140.1 (e_value=7e-56) | Symbols: GAUT8, QUA1 | Nucleotide-diphospho-sugar transferases superfamily protein | chr3:9154748-9156642 FORWARD LENGTH=559;; (*ITAG) Solyc02g089440.2.1 (e_value=9e-59) genomic_reference:SL2.40ch02 gene_region:45843022-45845794 transcript_region:SL2.40ch02:45843022..45845794+ go_terms:GO:0047262 functional_description:"Glycosyltransferase (AHRD V1 **-- B9NC17_POPTR); contains Interpro domain(s) IPR002495 Glycosyl transferase, family 8 "; GO:0047262 NbS00044021g0004.1 protein NbS00030577g0004.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=4e-22) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-23) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=3e-24) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc09g010060.2.1 (e_value=1e-23) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00023613g0003.1 protein ; (*ITAG) Solyc05g014320.2.1 (e_value=5e-20) genomic_reference:SL2.40ch05 gene_region:8154699-8157508 transcript_region:SL2.40ch05:8154699..8157508- go_terms:GO:0008152 functional_description:"Acetyl esterase (AHRD V1 *--- AES_SHIFL); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00013800g0004.1 protein NbS00013800g0007.1 protein ; (*GB) gi|255539915|ref|XP_002511022.1| (e_value=7e-25) Hyoscyamine 6-dioxygenase, putative [Ricinus communis];; (*ITAG) Solyc04g009850.2.1 (e_value=3e-15) genomic_reference:SL2.40ch04 gene_region:3167860-3170633 transcript_region:SL2.40ch04:3167860..3170633- go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00017934g0102.1 protein NbS00014855g0007.1 protein NbS00029843g0004.1 protein NbS00008729g0003.1 protein NbS00029806g0007.1 protein NbS00029806g0008.1 protein NbS00016964g0004.1 protein NbS00051191g0003.1 protein ; (*GB) gi|359488588|ref|XP_002276597.2| (e_value=4e-16) PREDICTED: transportin-3-like [Vitis vinifera];; (*TAIR) AT1G12930.1 (e_value=4e-14) | Symbols: | ARM repeat superfamily protein | chr1:4398588-4405495 REVERSE LENGTH=1005; NbS00017308g0011.1 protein ; (*GB) gi|147862837|emb|CAN78368.1| (e_value=0.0) hypothetical protein VITISV_028672 [Vitis vinifera];; (*SWP) sp|Q9LZP3|PP293_ARATH (e_value=0.0) Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1;; (*TAIR) AT3G62470.1 (e_value=0.0) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:23106600-23108399 REVERSE LENGTH=599;; (*ITAG) Solyc01g097130.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:79854059-79856616 transcript_region:SL2.40ch01:79854059..79856616+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LT70_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00017308g0014.1 protein NbS00017308g0006.1 protein NbS00017308g0007.1 protein NbS00001100g0014.1 protein NbS00001100g0015.1 protein NbS00020275g0005.1 protein NbS00002860g0001.1 protein NbS00008583g0107.1 protein NbS00013950g0014.1 protein NbS00013950g0017.1 protein ; (*ITAG) Solyc04g074780.2.1 (e_value=5e-19) genomic_reference:SL2.40ch04 gene_region:58289413-58294058 transcript_region:SL2.40ch04:58289413..58294058- functional_description:"Plastid-targeted protein 3 (AHRD V1 *-*- Q9ARH3_CRAPL)"; NbS00028453g0006.1 protein ; (*ITAG) Solyc07g061780.2.1 (e_value=2e-30) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00057940g0002.1 protein NbS00056493g0006.1 protein ; (*GB) gi|224098798|ref|XP_002311270.1| (e_value=5e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9TLY1|ILVH_CYACA (e_value=5e-47) Acetolactate synthase small subunit OS=Cyanidium caldarium GN=ilvH PE=3 SV=1;; (*TAIR) AT2G31810.1 (e_value=4e-76) | Symbols: | ACT domain-containing small subunit of acetolactate synthase protein | chr2:13524271-13528246 FORWARD LENGTH=491;; (*ITAG) Solyc11g008780.1.1 (e_value=9e-90) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2962862-2970192 transcript_region:SL2.40ch11:2962862..2970192+ go_terms:GO:0009082,GO:0008152 functional_description:"Acetolactate synthase small subunit (AHRD V1 ***- Q9SMC2_NICPL); contains Interpro domain(s) IPR004789 Acetolactate synthase, small subunit "; GO:0009082,GO:0008152 NbS00013169g0005.1 protein ; (*GB) gi|112253845|ref|YP_717101.1| (e_value=3e-15) hypothetical protein BrnapMp002 [Brassica napus]; NbS00006612g0014.1 protein NbS00006612g0009.1 protein NbC24773510g0002.1 protein ; (*GB) gi|225456616|ref|XP_002266458.1| (e_value=2e-36) PREDICTED: HIPL1 protein-like [Vitis vinifera];; (*SWP) sp|Q9SSG3|HIPL1_ARATH (e_value=2e-31) HIPL1 protein OS=Arabidopsis thaliana GN=HIPL1 PE=1 SV=2;; (*TAIR) AT1G74790.1 (e_value=2e-32) | Symbols: | catalytics | chr1:28098912-28101673 FORWARD LENGTH=695;; (*ITAG) Solyc03g113490.2.1 (e_value=1e-54) genomic_reference:SL2.40ch03 gene_region:57669071-57672798 transcript_region:SL2.40ch03:57669071..57672798+ go_terms:GO:0005515 functional_description:"Hedgehog-interacting protein 1 (Fragment) (AHRD V1 *--- A9J6P8_9ROSI); contains Interpro domain(s) IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase "; GO:0005515 NbS00008449g0004.1 protein NbS00024286g0005.1 protein NbS00024286g0006.1 protein NbS00024286g0008.1 protein NbS00024286g0104.1 protein NbS00024286g0105.1 protein NbS00050375g0004.1 protein NbS00028833g0002.1 protein ; (*GB) gi|356514721|ref|XP_003526052.1| (e_value=8e-21) PREDICTED: ankyrin-1-like [Glycine max];; (*TAIR) AT5G54620.1 (e_value=5e-19) | Symbols: | Ankyrin repeat family protein | chr5:22187761-22189746 REVERSE LENGTH=431;; (*ITAG) Solyc06g074280.2.1 (e_value=3e-36) genomic_reference:SL2.40ch06 gene_region:42308972-42310630 transcript_region:SL2.40ch06:42308972..42310630+ go_terms:GO:0005515 functional_description:"Ankyrin repeat protein (AHRD V1 ***- B1Q4U3_9ROSI); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0005515 NbS00001227g0005.1 protein NbS00016910g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-22) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G40390.1 (e_value=7e-13) | Symbols: | DNAse I-like superfamily protein | chr1:15432576-15434674 REVERSE LENGTH=426; NbS00002921g0015.1 protein NbS00002921g0007.1 protein NbS00002921g0010.1 protein NbS00034336g0004.1 protein NbS00027907g0006.1 protein ; (*ITAG) Solyc07g021740.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:21298928-21299375 transcript_region:SL2.40ch07:21298928..21299375- functional_description:"Unknown Protein (AHRD V1)"; NbS00000993g0001.1 protein NbS00000993g0107.1 protein NbS00035317g0002.1 protein NbS00042991g0004.1 protein ; (*GB) gi|255549068|ref|XP_002515590.1| (e_value=3e-19) sulfate transporter, putative [Ricinus communis];; (*SWP) sp|Q9SV13|SUT31_ARATH (e_value=3e-15) Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1;; (*TAIR) AT3G51895.1 (e_value=2e-16) | Symbols: SULTR3;1, AST12 | sulfate transporter 3;1 | chr3:19251503-19255677 REVERSE LENGTH=658;; (*ITAG) Solyc12g006950.1.1 (e_value=1e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1379359-1384257 transcript_region:SL2.40ch12:1379359..1384257- go_terms:GO:0016020,GO:0016021 functional_description:"Sulfate transporter (AHRD V1 ***- Q0WVG5_ARATH); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0016020,GO:0016021 NbS00000156g0013.1 protein NbC23288952g0001.1 protein ; (*GB) gi|297807373|ref|XP_002871570.1| (e_value=7e-38) hypothetical protein ARALYDRAFT_488169 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|P31167|ADT1_ARATH (e_value=8e-39) ADP,ATP carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=AAC1 PE=1 SV=2;; (*TAIR) AT3G08580.2 (e_value=6e-40) | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605706-2607030 REVERSE LENGTH=381;; (*ITAG) Solyc11g062190.1.1 (e_value=6e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46162597-46164224 transcript_region:SL2.40ch11:46162597..46164224+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00013587g0001.1 protein NbS00028964g0004.1 protein NbS00003675g0009.1 protein ; (*ITAG) Solyc02g079150.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:38335362-38336037 transcript_region:SL2.40ch02:38335362..38336037- functional_description:"F-box family protein (AHRD V1 ***- B9H220_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00001031g0003.1 protein NbS00001031g0004.1 protein ; (*GB) gi|295322853|gb|ADG01874.1| (e_value=6e-17) flowering time [Vitis californica];; (*SWP) sp|P0DH90|FRIGI_ARATH (e_value=1e-15) Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1;; (*TAIR) AT4G00650.1 (e_value=1e-15) | Symbols: FRI, FLA | FRIGIDA-like protein | chr4:269026-270363 FORWARD LENGTH=314;; (*ITAG) Solyc12g042440.1.1 (e_value=3e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43141897-43148675 transcript_region:SL2.40ch12:43141897..43148675- functional_description:"FRIGIDA (AHRD V1 *-*- Q52S96_ARATH); contains Interpro domain(s) IPR012474 Frigida-like "; NbS00036633g0003.1 protein NbS00022383g0003.1 protein NbS00054117g0003.1 protein NbS00018530g0003.1 protein ; (*ITAG) Solyc01g094290.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:77580564-77591455 transcript_region:SL2.40ch01:77580564..77591455- go_terms:GO:0008152,GO:0016021,GO:0006813 functional_description:"Glutathione-regulated potassium-efflux system protein (AHRD V1 *-*- B3CM92_WOLPP); contains Interpro domain(s) IPR004771 K+/H+ exchanger "; GO:0008152,GO:0016021,GO:0006813 NbS00023818g0001.1 protein ; (*GB) gi|147819143|emb|CAN78080.1| (e_value=7e-30) hypothetical protein VITISV_021299 [Vitis vinifera];; (*SWP) sp|Q9SK08|LBD11_ARATH (e_value=6e-28) LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2;; (*TAIR) AT2G28500.1 (e_value=5e-29) | Symbols: LBD11 | LOB domain-containing protein 11 | chr2:12186603-12188110 REVERSE LENGTH=232;; (*ITAG) Solyc05g048740.2.1 (e_value=9e-32) genomic_reference:SL2.40ch05 gene_region:58452352-58453745 transcript_region:SL2.40ch05:58452352..58453745+ go_terms:GO:0005515 functional_description:"LOB domain protein 1 (AHRD V1 ***- D7KHW8_ARALY); contains Interpro domain(s) IPR004883 Lateral organ boundaries, LOB "; GO:0005515 NbS00042853g0002.1 protein NbS00060391g0003.1 protein NbS00060391g0004.1 protein NbC23615037g0001.1 protein ; (*GB) gi|225469002|ref|XP_002265300.1| (e_value=1e-26) PREDICTED: kinesin-1-like [Vitis vinifera];; (*SWP) sp|Q07970|ATK1_ARATH (e_value=5e-23) Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1;; (*TAIR) AT4G21270.1 (e_value=4e-24) | Symbols: ATK1, KATA, KATAP | kinesin 1 | chr4:11329579-11333884 REVERSE LENGTH=793;; (*ITAG) Solyc07g064030.2.1 (e_value=2e-34) genomic_reference:SL2.40ch07 gene_region:63553126-63558435 transcript_region:SL2.40ch07:63553126..63558435+ go_terms:GO:0008569 functional_description:"Kinesin-like protein (AHRD V1 ***- Q9M0X6_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008569 NbS00008404g0008.1 protein NbS00005047g0006.1 protein NbS00005047g0007.1 protein NbS00005047g0008.1 protein NbS00023820g0003.1 protein ; (*ITAG) Solyc10g017630.1.1 (e_value=8e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:5500412-5502164 transcript_region:SL2.40ch10:5500412..5502164- go_terms:GO:0003700,GO:0046982 functional_description:"MADS-box transcription factor (AHRD V1 **** Q1EMR8_PLAMJ); contains Interpro domain(s) IPR002487 Transcription factor, K-box "; GO:0003700,GO:0046982 NbS00023820g0004.1 protein ; (*ITAG) Solyc01g100020.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:81857864-81869067 transcript_region:SL2.40ch01:81857864..81869067+ go_terms:GO:0004630 functional_description:"Phospholipase D (AHRD V1 **** A3KH17_ARATH); contains Interpro domain(s) IPR016555 Phospholipase D, eukaryota "; GO:0004630 NbS00031960g0008.1 protein NbS00021646g0006.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-40) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00021646g0007.1 protein NbS00013877g0013.1 protein NbS00013877g0017.1 protein ; (*ITAG) Solyc09g059490.1.1 (e_value=7e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:50155674-50161236 transcript_region:SL2.40ch09:50155674..50161236- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00013877g0008.1 protein NbS00018301g0010.1 protein NbS00006120g0002.1 protein NbS00006120g0003.1 protein ; (*GB) gi|255564232|ref|XP_002523113.1| (e_value=2e-63) Pectinesterase-3 precursor, putative [Ricinus communis];; (*SWP) sp|O81415|PME39_ARATH (e_value=6e-35) Probable pectinesterase/pectinesterase inhibitor 39 OS=Arabidopsis thaliana GN=PME39 PE=2 SV=1;; (*TAIR) AT4G02300.1 (e_value=5e-36) | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1009366-1013034 REVERSE LENGTH=532;; (*ITAG) Solyc06g009190.2.1 (e_value=9e-79) genomic_reference:SL2.40ch06 gene_region:3130110-3135793 transcript_region:SL2.40ch06:3130110..3135793+ go_terms:GO:0005618,GO:0030599 functional_description:"Pectinesterase (AHRD V1 ***- B9SAU4_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0005618,GO:0030599 NbS00034918g0002.1 protein NbS00018854g0002.1 protein NbC23461751g0001.1 protein ; (*ITAG) Solyc03g098490.1.1 (e_value=3e-13) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch03 gene_region:54217657-54218670 transcript_region:SL2.40ch03:54217657..54218670- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008480 Protein of unknown function DUF761, plant "; NbS00007155g0009.1 protein ; (*ITAG) Solyc02g087360.2.1 (e_value=9e-36) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00007155g0010.1 protein ; (*GB) gi|356500930|ref|XP_003519283.1| (e_value=7e-23) PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Glycine max];; (*SWP) sp|O04539|SNL4_ARATH (e_value=5e-23) Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3;; (*TAIR) AT1G70060.1 (e_value=4e-24) | Symbols: SNL4 | SIN3-like 4 | chr1:26383789-26389568 FORWARD LENGTH=1326;; (*ITAG) Solyc02g087360.2.1 (e_value=9e-28) genomic_reference:SL2.40ch02 gene_region:44362229-44370397 transcript_region:SL2.40ch02:44362229..44370397- go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00018008g0002.1 protein NbS00032100g0002.1 protein NbC25723962g0001.1 protein ; (*ITAG) Solyc06g065820.2.1 (e_value=3e-17) genomic_reference:SL2.40ch06 gene_region:37639581-37641049 transcript_region:SL2.40ch06:37639581..37641049- go_terms:GO:0003700 functional_description:"Ethylene-responsive transcription factor 7 (AHRD V1 *-** ERF83_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding "; GO:0003700 NbS00012414g0011.1 protein NbC23929283g0001.1 protein ; (*GB) gi|20197595|gb|AAD20114.3| (e_value=2e-37) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT2G17930.1 (e_value=4e-40) | Symbols: | Phosphatidylinositol 3- and 4-kinase family protein with FAT domain | chr2:7784455-7802230 REVERSE LENGTH=3858;; (*ITAG) Solyc02g083900.2.1 (e_value=9e-43) genomic_reference:SL2.40ch02 gene_region:41720787-41743076 transcript_region:SL2.40ch02:41720787..41743076- go_terms:GO:0003713 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *--- ATM_CANGA); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0003713 NbS00011972g0204.1 protein NbS00011972g0207.1 protein NbS00011972g0308.1 protein NbS00009243g0012.1 protein ; (*GB) gi|169977312|emb|CAQ18903.1| (e_value=7e-72) chromomethylase [Nicotiana sylvestris];; (*SWP) sp|O49139|CMT1_ARATH (e_value=4e-42) Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana GN=CMT1 PE=5 SV=2;; (*TAIR) AT1G80740.1 (e_value=3e-43) | Symbols: CMT1, DMT4 | chromomethylase 1 | chr1:30342394-30346831 FORWARD LENGTH=791;; (*ITAG) Solyc12g100330.1.1 (e_value=2e-98) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65430879-65437290 transcript_region:SL2.40ch12:65430879..65437290+ go_terms:GO:0003886 functional_description:"Cytosine-specific methyltransferase (AHRD V1 **** B9GLJ3_POPTR); contains Interpro domain(s) IPR001525 C-5 cytosine-specific DNA methylase "; GO:0003886 NbS00009243g0006.1 protein NbS00036916g0003.1 protein NbS00015549g0005.1 protein ; (*GB) gi|350539181|ref|NP_001234635.1| (e_value=4e-46) auxin-regulated protein [Solanum lycopersicum];; (*TAIR) AT5G59790.1 (e_value=2e-35) | Symbols: | Domain of unknown function (DUF966) | chr5:24090950-24092804 FORWARD LENGTH=423;; (*ITAG) Solyc06g075690.2.1 (e_value=7e-49) genomic_reference:SL2.40ch06 gene_region:43427533-43430452 transcript_region:SL2.40ch06:43427533..43430452+ functional_description:"Auxin-regulated protein (AHRD V1 ***- Q945F5_SOLLC); contains Interpro domain(s) IPR010369 Protein of unknown function DUF966 "; NbS00015939g0001.1 protein ; (*GB) gi|4995103|emb|CAB44006.1| (e_value=2e-16) H(+)-transporting ATP synthase [Cola nitida];; (*SWP) sp|P07137|ATPB_IPOBA (e_value=1e-17) ATP synthase subunit beta, chloroplastic OS=Ipomoea batatas GN=atpB PE=3 SV=2;; (*ITAG) ATCG00480.1 (e_value=2e-17) | Symbols: ATPB, PB | ATP synthase subunit beta | chrC:52660-54156 REVERSE LENGTH=498;; (*ITAG) Solyc01g007320.2.1 (e_value=3e-18) genomic_reference:SL2.40ch01 gene_region:1849252-1851757 transcript_region:SL2.40ch01:1849252..1851757- go_terms:GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit beta chloroplastic (AHRD V1 ***- Q8MBF8_9SOLA); contains Interpro domain(s) IPR005722 ATPase, F1 complex, beta subunit "; GO:0045261,GO:0005524,GO:0017111,GO:0033178,GO:0016469 NbS00030821g0005.1 protein NbS00000479g0001.1 protein NbS00000479g0111.1 protein NbS00021191g0004.1 protein NbS00009942g0002.1 protein ; (*GB) gi|25992541|gb|AAN77150.1| (e_value=3e-31) fiber protein Fb11 [Gossypium barbadense];; (*TAIR) AT2G46540.1 (e_value=1e-28) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:19110687-19111681 REVERSE LENGTH=65;; (*ITAG) Solyc01g096090.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:78955255-78958813 transcript_region:SL2.40ch01:78955255..78958813- functional_description:"Fiber protein Fb11 (AHRD V1 ***- Q8GT82_GOSBA)"; NbS00026563g0002.1 protein NbS00054535g0002.1 protein ; (*GB) gi|255546123|ref|XP_002514121.1| (e_value=1e-32) valacyclovir hydrolase, putative [Ricinus communis];; (*TAIR) AT1G29840.1 (e_value=2e-31) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:10445735-10447422 REVERSE LENGTH=263;; (*ITAG) Solyc07g039510.2.1 (e_value=8e-42) genomic_reference:SL2.40ch07 gene_region:44941343-44948351 transcript_region:SL2.40ch07:44941343..44948351- go_terms:GO:0003824 functional_description:"Esterase/lipase/thioesterase (Fragment) (AHRD V1 **-- B3VW47_POPTN); contains Interpro domain(s) IPR013744 Protein of unknown function DUF1749 "; GO:0003824 NbS00049416g0002.1 protein ; (*GB) gi|255553895|ref|XP_002517988.1| (e_value=1e-27) hypothetical protein RCOM_1176360 [Ricinus communis]; NbS00030549g0002.1 protein NbS00030549g0004.1 protein ; (*GB) gi|113205246|gb|AAT39963.2| (e_value=3e-15) Polyprotein, putative [Solanum demissum]; NbS00059052g0009.1 protein ; (*GB) gi|224090073|ref|XP_002308931.1| (e_value=1e-80) predicted protein [Populus trichocarpa];; (*SWP) sp|P56725|ZOX_PHAVU (e_value=5e-79) Zeatin O-xylosyltransferase OS=Phaseolus vulgaris GN=ZOX1 PE=2 SV=1;; (*TAIR) AT2G15490.1 (e_value=2e-46) | Symbols: UGT73B4 | UDP-glycosyltransferase 73B4 | chr2:6761750-6763398 FORWARD LENGTH=484;; (*ITAG) Solyc04g016210.2.1 (e_value=2e-101) genomic_reference:SL2.40ch04 gene_region:6974301-6975814 transcript_region:SL2.40ch04:6974301..6975814- go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** B8QI32_9MAGN); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00023879g0003.1 protein NbS00009361g0012.1 protein ; (*GB) gi|225444440|ref|XP_002266891.1| (e_value=0.0) PREDICTED: uncharacterized protein LOC100252085 [Vitis vinifera];; (*TAIR) AT4G21890.1 (e_value=1e-55) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11611874-11612674 REVERSE LENGTH=266;; (*ITAG) Solyc05g006410.2.1 (e_value=2e-22) genomic_reference:SL2.40ch05 gene_region:1044582-1047873 transcript_region:SL2.40ch05:1044582..1047873- go_terms:GO:0008270 functional_description:"Zinc finger MYND-type containing 15 (AHRD V1 ***- A2A642_MOUSE); contains Interpro domain(s) IPR002893 Zinc finger, MYND-type "; GO:0008270 NbS00009361g0013.1 protein ; (*GB) gi|296087001|emb|CBI33265.3| (e_value=5e-140) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G21890.1 (e_value=2e-114) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; Has 14 Blast hits to 14 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:11611874-11612674 REVERSE LENGTH=266; NbS00005945g0005.1 protein NbS00005945g0006.1 protein NbC25995009g0001.1 protein ; (*GB) gi|255543300|ref|XP_002512713.1| (e_value=2e-16) sil1, putative [Ricinus communis];; (*TAIR) AT3G51980.1 (e_value=1e-12) | Symbols: | ARM repeat superfamily protein | chr3:19285811-19287502 REVERSE LENGTH=382;; (*ITAG) Solyc04g009320.2.1 (e_value=7e-19) genomic_reference:SL2.40ch04 gene_region:2766840-2771952 transcript_region:SL2.40ch04:2766840..2771952+ go_terms:GO:0005488 functional_description:"Hsp70 nucleotide exchange factor fes1 (AHRD V1 *-*- B2W0L6_PYRTR); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488 NbS00011503g0002.1 protein NbS00011503g0004.1 protein NbS00011503g0007.1 protein NbS00001933g0012.1 protein NbS00001933g0009.1 protein ; (*GB) gi|296083227|emb|CBI22863.3| (e_value=3e-26) unnamed protein product [Vitis vinifera];; (*SWP) sp|P57741|PFD3_ARATH (e_value=7e-25) Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=2 SV=1;; (*TAIR) AT5G49510.2 (e_value=5e-26) | Symbols: PFD3 | prefoldin 3 | chr5:20080729-20082456 FORWARD LENGTH=195;; (*ITAG) Solyc05g053390.2.1 (e_value=1e-34) genomic_reference:SL2.40ch05 gene_region:62636005-62641398 transcript_region:SL2.40ch05:62636005..62641398- go_terms:GO:0015631 functional_description:"Prefoldin subunit 3 (AHRD V1 ***- B6TKE7_MAIZE); contains Interpro domain(s) IPR016655 Prefoldin, subunit 3 "; GO:0015631 NbS00011394g0003.1 protein NbS00011394g0007.1 protein NbS00025480g0001.1 protein NbS00005088g0004.1 protein NbS00005088g0107.1 protein NbS00005088g0108.1 protein NbS00005088g0109.1 protein NbS00016475g0008.1 protein NbS00021799g0005.1 protein ; (*GB) gi|225429866|ref|XP_002280969.1| (e_value=2e-16) PREDICTED: cytochrome P450 716B2 [Vitis vinifera];; (*ITAG) Solyc05g021390.2.1 (e_value=7e-13) genomic_reference:SL2.40ch05 gene_region:27157336-27159140 transcript_region:SL2.40ch05:27157336..27159140+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00062262g0002.1 protein NbS00006476g0005.1 protein NbS00023484g0008.1 protein NbS00001219g0006.1 protein NbS00003794g0013.1 protein NbS00003794g0008.1 protein NbS00003794g0009.1 protein NbS00006873g0004.1 protein NbS00009273g0007.1 protein NbS00003222g0003.1 protein NbS00003222g0104.1 protein NbS00019673g0013.1 protein NbS00028155g0007.1 protein NbS00002342g0013.1 protein NbS00002342g0009.1 protein NbS00014603g0003.1 protein NbS00028793g0002.1 protein ; (*GB) gi|356507238|ref|XP_003522376.1| (e_value=6e-55) PREDICTED: serine/threonine-protein kinase ATM-like [Glycine max];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=9e-50) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=8e-51) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112950.2.1 (e_value=7e-61) genomic_reference:SL2.40ch03 gene_region:57309377-57340774 transcript_region:SL2.40ch03:57309377..57340774+ go_terms:GO:0016773 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- D2V0W7_NAEGR); contains Interpro domain(s) IPR015519 Ataxia-Telangiectasia Mutated "; GO:0016773 NbS00003894g0011.1 protein NbS00003894g0010.1 protein NbS00059133g0001.1 protein NbS00005224g0002.1 protein NbS00022323g0002.1 protein NbS00022323g0003.1 protein NbS00008362g0003.1 protein NbC25187796g0001.1 protein ; (*ITAG) Solyc04g080270.2.1 (e_value=7e-28) genomic_reference:SL2.40ch04 gene_region:62098225-62103204 transcript_region:SL2.40ch04:62098225..62103204- functional_description:"Genomic DNA chromosome 5 P1 clone MJB21 (AHRD V1 *-*- Q9FMZ3_ARATH)"; NbS00002626g0012.1 protein NbS00002626g0014.1 protein NbS00047693g0002.1 protein NbS00047300g0003.1 protein ; (*GB) gi|255560064|ref|XP_002521050.1| (e_value=2e-27) Uro-adherence factor A precursor, putative [Ricinus communis];; (*TAIR) AT2G32240.1 (e_value=6e-24) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333;; (*ITAG) Solyc07g043320.2.1 (e_value=2e-46) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbS00047300g0004.1 protein ; (*ITAG) Solyc07g043320.2.1 (e_value=3e-15) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbS00060982g0002.1 protein ; (*GB) gi|297741242|emb|CBI32193.3| (e_value=2e-70) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q86HW6|Y6461_DICDI (e_value=2e-17) Probable serine/threonine-protein kinase DDB_G0276461 OS=Dictyostelium discoideum GN=DDB_G0276461 PE=3 SV=1;; (*TAIR) AT2G32850.1 (e_value=5e-59) | Symbols: | Protein kinase superfamily protein | chr2:13935448-13937977 REVERSE LENGTH=650;; (*ITAG) Solyc01g074010.2.1 (e_value=8e-69) genomic_reference:SL2.40ch01 gene_region:70578697-70582804 transcript_region:SL2.40ch01:70578697..70582804- go_terms:GO:0006468 functional_description:"Protein kinase (AHRD V1 *-*- C0NU81_AJECG); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00026524g0002.1 protein NbS00032457g0001.1 protein ; (*GB) gi|225459342|ref|XP_002285801.1| (e_value=3e-59) PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera];; (*SWP) sp|Q803I2|ERGI3_DANRE (e_value=2e-30) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1;; (*TAIR) AT1G36050.2 (e_value=3e-56) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450467-13453055 FORWARD LENGTH=386;; (*ITAG) Solyc04g072910.2.1 (e_value=1e-64) genomic_reference:SL2.40ch04 gene_region:57470199-57481642 transcript_region:SL2.40ch04:57470199..57481642- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "; GO:0005515 NbS00058114g0002.1 protein NbS00025439g0001.1 protein NbS00026127g0004.1 protein NbS00026127g0007.1 protein NbS00026127g0008.1 protein NbS00010955g0006.1 protein NbS00010955g0008.1 protein NbS00012225g0006.1 protein NbS00012225g0108.1 protein NbS00041215g0002.1 protein NbS00007005g0009.1 protein NbS00007005g0010.1 protein NbS00001059g0003.1 protein NbS00004687g0005.1 protein NbS00004687g0007.1 protein NbS00018343g0004.1 protein NbS00018343g0009.1 protein NbS00045659g0003.1 protein NbS00005698g0010.1 protein ; (*ITAG) Solyc04g050960.2.1 (e_value=2e-20) genomic_reference:SL2.40ch04 gene_region:48267113-48273441 transcript_region:SL2.40ch04:48267113..48273441+ go_terms:GO:0045449 functional_description:"Chromatin remodeling complex subunit (AHRD V1 *--- B9N3S4_POPTR); contains Interpro domain(s) IPR012287 Homeodomain-related "; GO:0045449 NbS00005698g0209.1 protein NbS00017571g0008.1 protein NbS00000781g0015.1 protein NbS00014722g0004.1 protein NbS00014722g0005.1 protein NbS00061643g0001.1 protein ; (*GB) gi|118153871|gb|ABK63961.1| (e_value=2e-44) PT2 [Solanum melongena];; (*SWP) sp|Q8H074|PT112_ORYSJ (e_value=7e-34) Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1;; (*TAIR) AT5G43360.1 (e_value=4e-34) | Symbols: PHT3, ATPT4, PHT1;3 | phosphate transporter 1;3 | chr5:17409524-17411214 FORWARD LENGTH=521;; (*ITAG) Solyc03g005560.1.1 (e_value=1e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:412992-414578 transcript_region:SL2.40ch03:412992..414578+ go_terms:GO:0005315 functional_description:"Inorganic phosphate transporter (AHRD V1 **** O22549_SOLLC); contains Interpro domain(s) IPR004738 Phosphate permease "; GO:0005315 NbS00000095g0005.1 protein NbS00022770g0005.1 protein NbS00022770g0006.1 protein NbS00022770g0008.1 protein NbS00025997g0004.1 protein ; (*GB) gi|147794504|emb|CAN71609.1| (e_value=4e-14) hypothetical protein VITISV_013246 [Vitis vinifera];; (*ITAG) Solyc04g005730.2.1 (e_value=6e-17) genomic_reference:SL2.40ch04 gene_region:471436-474989 transcript_region:SL2.40ch04:471436..474989+ functional_description:"Os12g0417000 protein (Fragment) (AHRD V1 *--- Q0INP2_ORYSJ)"; NbS00032994g0002.1 protein NbC25835301g0002.1 protein ; (*GB) gi|359487168|ref|XP_002263954.2| (e_value=6e-17) PREDICTED: probable protein arginine N-methyltransferase 3-like [Vitis vinifera];; (*SWP) sp|A3BMN9|ANM3_ORYSJ (e_value=9e-14) Probable protein arginine N-methyltransferase 3 OS=Oryza sativa subsp. japonica GN=PRMT3 PE=2 SV=1;; (*TAIR) AT3G12270.1 (e_value=2e-14) | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601;; (*ITAG) Solyc01g096550.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:79391836-79397141 transcript_region:SL2.40ch01:79391836..79397141+ go_terms:GO:0035242 functional_description:"Protein arginine methyltransferase (AHRD V1 *-** C1E5H4_9CHLO); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbC25835301g0003.1 protein ; (*GB) gi|359487168|ref|XP_002263954.2| (e_value=6e-17) PREDICTED: probable protein arginine N-methyltransferase 3-like [Vitis vinifera];; (*SWP) sp|A3BMN9|ANM3_ORYSJ (e_value=9e-14) Probable protein arginine N-methyltransferase 3 OS=Oryza sativa subsp. japonica GN=PRMT3 PE=2 SV=1;; (*TAIR) AT3G12270.1 (e_value=2e-14) | Symbols: ATPRMT3, PRMT3 | protein arginine methyltransferase 3 | chr3:3910642-3913122 FORWARD LENGTH=601;; (*ITAG) Solyc01g096550.2.1 (e_value=2e-29) genomic_reference:SL2.40ch01 gene_region:79391836-79397141 transcript_region:SL2.40ch01:79391836..79397141+ go_terms:GO:0035242 functional_description:"Protein arginine methyltransferase (AHRD V1 *-** C1E5H4_9CHLO); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00002679g0005.1 protein ; (*GB) gi|15822693|gb|AAL03950.1| (e_value=7e-61) relA/spoT-like protein RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=2e-25) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=7e-53) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=3e-58) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00006176g0105.1 protein NbS00008970g0004.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=1e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00018485g0002.1 protein NbS00020897g0009.1 protein ; (*GB) gi|224109584|ref|XP_002315244.1| (e_value=3e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g072950.1.1 (e_value=1e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61125499-61125981 transcript_region:SL2.40ch09:61125499..61125981- go_terms:GO:0046910 functional_description:"Pectinesterase inhibitor (AHRD V1 **** A2Q2X5_MEDTR); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor "; GO:0046910 NbS00018090g0004.1 protein NbS00027912g0005.1 protein NbS00003430g0007.1 protein NbS00051940g0004.1 protein ; (*GB) gi|70568805|dbj|BAE06268.1| (e_value=6e-22) cyclin-dependent kinase A1 [Scutellaria baicalensis];; (*SWP) sp|Q41639|CDC2_VIGAC (e_value=1e-20) Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1;; (*TAIR) AT3G48750.1 (e_value=2e-18) | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1 | cell division control 2 | chr3:18072238-18074296 FORWARD LENGTH=294;; (*ITAG) Solyc08g066330.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52077877-52083689 transcript_region:SL2.40ch08:52077877..52083689+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 2 (AHRD V1 **** C1C4M4_RANCA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00002343g0003.1 protein NbS00009879g0005.1 protein NbS00009879g0006.1 protein NbS00023448g0011.1 protein NbS00023448g0006.1 protein NbS00023448g0007.1 protein NbS00023448g0010.1 protein NbS00020515g0003.1 protein NbS00020515g0004.1 protein NbS00045152g0001.1 protein NbS00056537g0001.1 protein NbS00014535g0104.1 protein NbS00029825g0002.1 protein NbS00035467g0007.1 protein ; (*ITAG) Solyc03g025980.2.1 (e_value=5e-16) genomic_reference:SL2.40ch03 gene_region:7783109-7787893 transcript_region:SL2.40ch03:7783109..7787893+ go_terms:GO:0043666 functional_description:"Peptidyl-prolyl cis-trans isomerase (Fragment) (AHRD V1 ***- A9Y0F6_9MYRT); contains Interpro domain(s) IPR007062 Protein phosphatase inhibitor 2 (IPP-2) "; GO:0043666 NbS00011574g0011.1 protein NbS00011574g0006.1 protein ; (*GB) gi|224086600|ref|XP_002307915.1| (e_value=3e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT2G32240.1 (e_value=4e-14) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). | chr2:13684614-13689330 REVERSE LENGTH=1333;; (*ITAG) Solyc07g043320.2.1 (e_value=5e-35) genomic_reference:SL2.40ch07 gene_region:54338081-54344479 transcript_region:SL2.40ch07:54338081..54344479+ go_terms:GO:0000166 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0000166 NbS00011574g0007.1 protein NbS00044533g0004.1 protein ; (*SWP) sp|Q6DBP3|PT505_ARATH (e_value=2e-13) Probable sugar phosphate/phosphate translocator At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1;; (*TAIR) AT5G05820.1 (e_value=2e-14) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1752106-1753857 REVERSE LENGTH=309;; (*ITAG) Solyc05g052790.2.1 (e_value=3e-14) genomic_reference:SL2.40ch05 gene_region:62122565-62126690 transcript_region:SL2.40ch05:62122565..62126690- go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00022610g0112.1 protein NbS00022610g0114.1 protein NbS00009608g0004.1 protein NbS00019499g0002.1 protein NbS00040096g0006.1 protein NbS00045831g0004.1 protein NbS00042047g0006.1 protein NbS00009901g0204.1 protein NbS00009901g0205.1 protein NbS00044550g0001.1 protein NbS00018642g0003.1 protein NbS00024445g0006.1 protein NbS00024445g0007.1 protein ; (*GB) gi|358349364|ref|XP_003638708.1| (e_value=1e-50) hypothetical protein MTR_140s0031 [Medicago truncatula];; (*TAIR) AT3G13290.1 (e_value=2e-44) | Symbols: VCR | varicose-related | chr3:4297529-4303113 FORWARD LENGTH=1340;; (*ITAG) Solyc10g005920.2.1 (e_value=7e-61) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00021058g0005.1 protein ; (*GB) gi|225470340|ref|XP_002267812.1| (e_value=3e-66) PREDICTED: uncharacterized protein LOC100248155 [Vitis vinifera]; NbS00021058g0010.1 protein NbS00058750g0001.1 protein ; (*ITAG) Solyc11g044620.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:35992089-35992328 transcript_region:SL2.40ch11:35992089..35992328- functional_description:"Imp biosynthesis protein (AHRD V1 ***- A6N1F2_ORYSI)"; NbS00006316g0007.1 protein NbS00044475g0004.1 protein NbC25518929g0001.1 protein ; (*GB) gi|302141901|emb|CBI19104.3| (e_value=2e-24) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WNP3|PP319_ARATH (e_value=7e-22) Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1;; (*TAIR) AT4G18520.1 (e_value=5e-23) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:10215250-10217103 REVERSE LENGTH=617;; (*ITAG) Solyc07g062820.1.1 (e_value=4e-31) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:62696420-62698273 transcript_region:SL2.40ch07:62696420..62698273+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat protein PPR1106-17 (AHRD V1 ***- B6SWY6_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00056501g0002.1 protein NbS00024222g0003.1 protein NbS00024222g0007.1 protein ; (*GB) gi|224062505|ref|XP_002300844.1| (e_value=1e-14) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g065240.2.1 (e_value=4e-19) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00008051g0003.1 protein NbS00008051g0007.1 protein ; (*GB) gi|15233564|ref|NP_194667.1| (e_value=3e-40) phosphoinositide-3-kinase, regulatory subunit 4, p150 [Arabidopsis thaliana];; (*TAIR) AT4G29380.1 (e_value=6e-43) | Symbols: | protein kinase family protein / WD-40 repeat family protein | chr4:14458822-14464692 FORWARD LENGTH=1494;; (*ITAG) Solyc04g012170.2.1 (e_value=4e-49) genomic_reference:SL2.40ch04 gene_region:4451581-4460764 transcript_region:SL2.40ch04:4451581..4460764- go_terms:GO:0006468,GO:0005488,GO:0004867 functional_description:"Kinase family protein (AHRD V1 ***- D7MCM2_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488,GO:0004867 NbS00008051g0008.1 protein NbS00014411g0016.1 protein NbS00014411g0020.1 protein ; (*ITAG) Solyc04g045260.1.1 (e_value=1e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:31171275-31174232 transcript_region:SL2.40ch04:31171275..31174232+ functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00014411g0023.1 protein NbS00016237g0002.1 protein NbS00008108g0001.1 protein ; (*ITAG) Solyc06g073160.2.1 (e_value=4e-40) genomic_reference:SL2.40ch06 gene_region:41461216-41466739 transcript_region:SL2.40ch06:41461216..41466739- functional_description:"Genomic DNA chromosome 5 P1 clone MNF13 (AHRD V1 *-*- Q9FM45_ARATH)"; NbS00002552g0105.1 protein NbS00002552g0106.1 protein NbS00018804g0011.1 protein NbS00018804g0012.1 protein NbS00018804g0014.1 protein ; (*GB) gi|147861826|emb|CAN78929.1| (e_value=4e-28) hypothetical protein VITISV_026521 [Vitis vinifera];; (*TAIR) AT4G34280.1 (e_value=2e-12) | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:16407084-16410644 FORWARD LENGTH=783;; (*ITAG) Solyc01g107360.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:86688549-86696639 transcript_region:SL2.40ch01:86688549..86696639+ go_terms:GO:0000166 functional_description:"Coatomer subunit beta' (AHRD V1 *--- COPB2_DICDI); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00018804g0006.1 protein NbS00018804g0007.1 protein NbS00019682g0006.1 protein NbS00019682g0008.1 protein NbS00015402g0004.1 protein NbS00015402g0005.1 protein NbS00001508g0007.1 protein NbS00050187g0003.1 protein NbS00003459g0005.1 protein NbS00059742g0002.1 protein NbS00019443g0002.1 protein ; (*GB) gi|224075972|ref|XP_002304853.1| (e_value=1e-33) predicted protein [Populus trichocarpa];; (*SWP) sp|F4I096|MED13_ARATH (e_value=3e-19) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.1 (e_value=2e-20) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20646875 FORWARD LENGTH=1921;; (*ITAG) Solyc04g039950.2.1 (e_value=1e-50) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00033640g0003.1 protein NbS00016211g0003.1 protein NbS00016211g0005.1 protein NbS00016211g0104.1 protein NbS00016211g0105.1 protein NbS00016211g0106.1 protein NbS00016211g0108.1 protein NbS00016211g0110.1 protein NbS00025760g0006.1 protein NbS00036775g0001.1 protein NbS00011067g0001.1 protein ; (*ITAG) Solyc07g061780.2.1 (e_value=1e-23) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00038188g0004.1 protein NbS00038188g0005.1 protein NbS00026948g0011.1 protein NbS00008276g0002.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-12) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00036640g0002.1 protein NbS00006382g0004.1 protein ; (*GB) gi|87241403|gb|ABD33261.1| (e_value=4e-14) RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula]; NbS00006382g0008.1 protein NbS00042663g0005.1 protein NbS00014769g0003.1 protein ; (*GB) gi|359479727|ref|XP_002274066.2| (e_value=6e-13) PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera];; (*ITAG) Solyc12g098390.1.1 (e_value=4e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64250702-64256979 transcript_region:SL2.40ch12:64250702..64256979- functional_description:"Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A (AHRD V1 *--- ANR28_MOUSE); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00045721g0002.1 protein NbS00024025g0003.1 protein NbS00024558g0003.1 protein ; (*GB) gi|224130834|ref|XP_002320936.1| (e_value=1e-43) predicted protein [Populus trichocarpa];; (*SWP) sp|P28668|SYEP_DROME (e_value=8e-27) Bifunctional glutamate/proline--tRNA ligase OS=Drosophila melanogaster GN=Aats-glupro PE=1 SV=2;; (*TAIR) AT3G62120.2 (e_value=1e-40) | Symbols: | Class II aaRS and biotin synthetases superfamily protein | chr3:23001227-23003849 REVERSE LENGTH=530;; (*ITAG) Solyc06g068320.2.1 (e_value=2e-49) genomic_reference:SL2.40ch06 gene_region:38710007-38717719 transcript_region:SL2.40ch06:38710007..38717719- go_terms:GO:0004818,GO:0005515 functional_description:"Prolyl-tRNA synthetase (AHRD V1 **** Q54Q07_DICDI); contains Interpro domain(s) IPR004499 Prolyl-tRNA synthetase, class IIa, prokaryotic-type "; GO:0004818,GO:0005515 NbS00050466g0005.1 protein NbS00050466g0008.1 protein NbS00039289g0004.1 protein NbS00039289g0005.1 protein NbS00039289g0006.1 protein NbS00039289g0007.1 protein NbS00039289g0008.1 protein ; (*GB) gi|356573785|ref|XP_003555036.1| (e_value=2e-14) PREDICTED: uncharacterized protein LOC100797980 [Glycine max]; NbS00030475g0001.1 protein NbS00013023g0007.1 protein NbS00012218g0004.1 protein NbS00015582g0006.1 protein NbS00022503g0007.1 protein NbS00022503g0010.1 protein NbS00027387g0003.1 protein NbS00019359g0002.1 protein ; (*GB) gi|356577071|ref|XP_003556652.1| (e_value=4e-17) PREDICTED: homeobox-leucine zipper protein ATHB-17-like [Glycine max];; (*SWP) sp|Q8S9N6|ATB17_ARATH (e_value=1e-16) Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1;; (*TAIR) AT2G01430.1 (e_value=9e-18) | Symbols: ATHB17, ATHB-17, HB17 | homeobox-leucine zipper protein 17 | chr2:187798-190369 REVERSE LENGTH=275;; (*ITAG) Solyc05g008050.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:2470506-2473261 transcript_region:SL2.40ch05:2470506..2473261+ go_terms:GO:0008134,GO:0004842 functional_description:"Homeobox-leucine zipper protein 14 (AHRD V1 *-*- D7LZT3_ARALY); contains Interpro domain(s) IPR003106 Leucine zipper, homeobox-associated "; GO:0008134,GO:0004842 NbS00025301g0001.1 protein NbS00025301g0004.1 protein NbS00058221g0002.1 protein ; (*ITAG) Solyc03g114060.2.1 (e_value=2e-27) genomic_reference:SL2.40ch03 gene_region:58154643-58161458 transcript_region:SL2.40ch03:58154643..58161458+ go_terms:GO:0005634,GO:0003677 functional_description:"Os02g0742100 protein (Fragment) (AHRD V1 *-*- Q0DXN7_ORYSJ); contains Interpro domain(s) IPR001025 Bromo adjacent region "; GO:0005634,GO:0003677 NbS00012333g0103.1 protein NbS00012333g0104.1 protein NbS00000412g0002.1 protein NbS00009586g0003.1 protein ; (*GB) gi|793854|emb|CAA57846.1| (e_value=2e-36) legumin precur [Magnolia salicifolia];; (*SWP) sp|P83004|13SB_FAGES (e_value=2e-38) 13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1;; (*TAIR) AT5G44120.2 (e_value=3e-23) | Symbols: CRA1, ATCRA1, CRU1 | RmlC-like cupins superfamily protein | chr5:17756460-17757811 REVERSE LENGTH=368;; (*ITAG) Solyc03g005580.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:421297-424318 transcript_region:SL2.40ch03:421297..424318- go_terms:GO:0045735 functional_description:"Legumin 11S-globulin (AHRD V1 **-- Q39770_GINBI); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "; GO:0045735 NbS00017410g0005.1 protein NbS00017410g0009.1 protein NbS00059818g0001.1 protein NbS00016144g0002.1 protein NbS00004772g0009.1 protein ; (*GB) gi|147768692|emb|CAN71659.1| (e_value=6e-39) hypothetical protein VITISV_016184 [Vitis vinifera];; (*TAIR) AT1G64770.2 (e_value=4e-38) | Symbols: NDF2, NDH45 | NDH-dependent cyclic electron flow 1 | chr1:24057549-24058565 FORWARD LENGTH=313;; (*ITAG) Solyc03g062720.2.1 (e_value=4e-49) genomic_reference:SL2.40ch03 gene_region:29344306-29346072 transcript_region:SL2.40ch03:29344306..29346072- go_terms:GO:0005975 functional_description:"Galactose mutarotase-like (AHRD V1 **-- A2Q5N9_MEDTR); contains Interpro domain(s) IPR011013 Glycoside hydrolase-type carbohydrate-binding "; GO:0005975 NbS00023256g0003.1 protein NbS00023256g0004.1 protein NbS00003783g0004.1 protein NbS00061362g0003.1 protein NbS00012611g0005.1 protein NbS00012611g0006.1 protein NbS00014786g0002.1 protein NbS00019528g0007.1 protein NbS00008776g0002.1 protein ; (*GB) gi|54261825|gb|AAV31175.1| (e_value=3e-21) Putative disease resistance protein, identical [Solanum tuberosum];; (*ITAG) Solyc04g015220.2.1 (e_value=2e-20) genomic_reference:SL2.40ch04 gene_region:5406762-5409516 transcript_region:SL2.40ch04:5406762..5409516- go_terms:GO:0005515,GO:0000166 functional_description:"Nbs-lrr, resistance protein"; GO:0005515,GO:0000166 NbS00026718g0002.1 protein NbS00037979g0001.1 protein NbS00037979g0002.1 protein NbS00045077g0004.1 protein NbS00030890g0002.1 protein NbS00010407g0003.1 protein NbC24128202g0001.1 protein ; (*GB) gi|147864587|emb|CAN79804.1| (e_value=2e-31) hypothetical protein VITISV_031502 [Vitis vinifera];; (*TAIR) AT5G54830.1 (e_value=6e-24) | Symbols: | DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein | chr5:22273394-22276117 FORWARD LENGTH=907;; (*ITAG) Solyc06g065720.1.1 (e_value=1e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:37551492-37554197 transcript_region:SL2.40ch06:37551492..37554197+ go_terms:GO:0004497 functional_description:"DOMON domain-containing protein (AHRD V1 **-- D7MUW8_ARALY); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; GO:0004497 NbS00017068g0001.1 protein ; (*GB) gi|255559120|ref|XP_002520582.1| (e_value=3e-77) cytosolic purine 5-nucleotidase, putative [Ricinus communis];; (*SWP) sp|Q75K12|NT5D_DICDI (e_value=1e-13) 5'-nucleotidase domain-containing protein DDB_G0275467 OS=Dictyostelium discoideum GN=DDB_G0275467 PE=3 SV=1;; (*TAIR) AT2G23890.1 (e_value=3e-77) | Symbols: | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase | chr2:10170680-10173622 FORWARD LENGTH=553;; (*ITAG) Solyc07g006190.2.1 (e_value=5e-93) genomic_reference:SL2.40ch07 gene_region:1015061-1025947 transcript_region:SL2.40ch07:1015061..1025947- go_terms:GO:0008253,GO:0005515 functional_description:"5&apos-nucleotidase (AHRD V1 **** D3B8C8_POLPA); contains Interpro domain(s) IPR016695 Purine 5'-nucleotidase "; GO:0008253,GO:0005515 NbS00029535g0003.1 protein NbS00035092g0002.1 protein NbS00028020g0101.1 protein NbS00028020g0104.1 protein NbS00030849g0006.1 protein NbS00059466g0003.1 protein NbS00008254g0006.1 protein NbS00013249g0004.1 protein NbS00013249g0005.1 protein NbS00045356g0107.1 protein NbS00023042g0002.1 protein ; (*ITAG) Solyc12g098860.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00014638g0005.1 protein NbS00014638g0106.1 protein NbS00031904g0002.1 protein NbS00031904g0004.1 protein ; (*ITAG) Solyc05g056150.2.1 (e_value=1e-14) genomic_reference:SL2.40ch05 gene_region:64692116-64697473 transcript_region:SL2.40ch05:64692116..64697473- go_terms:GO:0003949 functional_description:"1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (AHRD V1 **** D7G369_ECTSI); contains Interpro domain(s) IPR011858 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic "; GO:0003949 NbS00052540g0006.1 protein NbS00010002g0005.1 protein NbS00010002g0008.1 protein NbS00010002g0111.1 protein NbS00010002g0114.1 protein NbS00005246g0003.1 protein NbS00012788g0003.1 protein NbS00006191g0004.1 protein NbS00006191g0006.1 protein NbS00011535g0003.1 protein NbS00001592g0005.1 protein ; (*ITAG) Solyc07g066010.2.1 (e_value=1e-13) genomic_reference:SL2.40ch07 gene_region:64776745-64779607 transcript_region:SL2.40ch07:64776745..64779607+ go_terms:GO:0015171 functional_description:"Amino acid permease (AHRD V1 **** B9N5L8_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00001592g0010.1 protein NbS00042696g0003.1 protein ; (*GB) gi|71726952|gb|AAZ39647.1| (e_value=3e-20) cytochrome P450 monooxygenase [Petunia x hybrida];; (*SWP) sp|Q9AXH9|KAO1_HORVU (e_value=3e-17) Ent-kaurenoic acid oxidase 1 OS=Hordeum vulgare GN=KAO1 PE=1 SV=1;; (*TAIR) AT1G05160.1 (e_value=1e-16) | Symbols: CYP88A3, ATKAO1, KAO1 | cytochrome P450, family 88, subfamily A, polypeptide 3 | chr1:1487640-1489828 REVERSE LENGTH=490;; (*ITAG) Solyc10g007860.2.1 (e_value=2e-26) genomic_reference:SL2.40ch10 gene_region:2067866-2070928 transcript_region:SL2.40ch10:2067866..2070928+ go_terms:GO:0051777,GO:0019825 functional_description:"Cytochrome P450 ent-kaurenoic acid oxidase (AHRD V1 **** B9IB42_POPTR); contains Interpro domain(s) IPR002401 Cytochrome P450, E-class, group I "; GO:0051777,GO:0019825 NbS00003715g0006.1 protein NbS00003715g0007.1 protein NbS00003715g0010.1 protein NbS00002696g0002.1 protein NbS00005723g0006.1 protein NbS00060032g0001.1 protein NbS00036157g0004.1 protein NbS00025411g0001.1 protein NbS00011812g0104.1 protein NbS00011812g0106.1 protein NbS00032824g0011.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=2e-19) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00032824g0012.1 protein NbS00032824g0009.1 protein NbS00004310g0011.1 protein NbS00004310g0010.1 protein NbS00020979g0001.1 protein NbS00027071g0003.1 protein NbS00037908g0004.1 protein NbS00011924g0106.1 protein NbS00006603g0110.1 protein NbS00004414g0005.1 protein NbS00032037g0002.1 protein NbS00058774g0001.1 protein NbC24225228g0001.1 protein ; (*GB) gi|110739613|dbj|BAF01715.1| (e_value=1e-31) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT4G23440.1 (e_value=7e-34) | Symbols: | Disease resistance protein (TIR-NBS class) | chr4:12237765-12240659 FORWARD LENGTH=964;; (*ITAG) Solyc08g081260.1.1 (e_value=1e-47) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61486528-61489521 transcript_region:SL2.40ch08:61486528..61489521+ go_terms:GO:0031224,GO:0017111 functional_description:"Tir-nbs resistance protein (AHRD V1 **-- B9GWT3_POPTR); contains Interpro domain(s) IPR000157 Toll-Interleukin receptor "; GO:0031224,GO:0017111 NbS00000343g0005.1 protein NbS00047479g0007.1 protein NbS00047479g0009.1 protein NbS00018988g0005.1 protein NbS00029621g0002.1 protein NbS00050369g0001.1 protein NbS00038361g0002.1 protein NbS00002435g0001.1 protein NbS00004899g0003.1 protein NbS00026203g0006.1 protein NbS00017662g0009.1 protein NbS00011486g0004.1 protein NbS00030448g0004.1 protein ; (*GB) gi|359477254|ref|XP_003631954.1| (e_value=2e-14) PREDICTED: LOW QUALITY PROTEIN: probable NAD(P)H-dependent oxidoreductase 1-like [Vitis vinifera];; (*ITAG) Solyc12g042470.1.1 (e_value=1e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43212589-43216070 transcript_region:SL2.40ch12:43212589..43216070+ go_terms:GO:0032866,GO:0032867 functional_description:"Reductase 2 (AHRD V1 **** Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00005525g0003.1 protein NbS00018430g0004.1 protein ; (*ITAG) Solyc01g020340.1.1 (e_value=7e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:29350551-29354410 transcript_region:SL2.40ch01:29350551..29354410+ go_terms:GO:0008116 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MLP6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0008116 NbS00049236g0005.1 protein NbS00000433g0005.1 protein NbS00000433g0007.1 protein NbS00004173g0005.1 protein NbS00004173g0008.1 protein NbS00004173g0009.1 protein NbS00053210g0002.1 protein NbS00010796g0005.1 protein NbS00010796g0006.1 protein ; (*GB) gi|224132892|ref|XP_002327906.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=5e-26) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=4e-27) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=6e-31) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00025408g0002.1 protein NbS00018136g0011.1 protein NbS00018136g0007.1 protein NbS00018136g0009.1 protein NbS00018136g0010.1 protein ; (*ITAG) Solyc10g080790.1.1 (e_value=3e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61322546-61324401 transcript_region:SL2.40ch10:61322546..61324401- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbS00011356g0004.1 protein NbS00011356g0007.1 protein ; (*GB) gi|255559276|ref|XP_002520658.1| (e_value=1e-20) conserved hypothetical protein [Ricinus communis]; NbS00004213g0006.1 protein NbS00004213g0208.1 protein NbS00004213g0209.1 protein NbS00004213g0309.1 protein NbS00018281g0011.1 protein NbS00018281g0014.1 protein NbS00018281g0007.1 protein NbS00018281g0009.1 protein NbS00000315g0001.1 protein NbS00024785g0002.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-31) hypothetical protein [Nicotiana tabacum]; NbS00001246g0007.1 protein ; (*GB) gi|255545466|ref|XP_002513793.1| (e_value=5e-68) Cation transport protein chaC, putative [Ricinus communis];; (*SWP) sp|Q4KMJ1|CHAC2_DANRE (e_value=5e-24) Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1;; (*TAIR) AT1G44790.1 (e_value=7e-63) | Symbols: | ChaC-like family protein | chr1:16912403-16913582 REVERSE LENGTH=199;; (*ITAG) Solyc11g012910.1.1 (e_value=2e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5698967-5704663 transcript_region:SL2.40ch11:5698967..5704663+ functional_description:"Cation transport regulator protein (AHRD V1 ***- D8J1D8_HERSS); contains Interpro domain(s) IPR006840 ChaC-like protein "; NbS00001246g0008.1 protein NbS00028528g0003.1 protein NbS00021873g0004.1 protein NbS00021873g0009.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-31) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00059190g0006.1 protein NbS00009236g0006.1 protein ; (*ITAG) Solyc12g009150.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2461760-2464423 transcript_region:SL2.40ch12:2461760..2464423+ functional_description:"Os12g0554100 protein (Fragment) (AHRD V1 *-*- Q0IMQ6_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00014105g0007.1 protein NbS00024643g0006.1 protein NbS00057462g0005.1 protein NbS00020576g0006.1 protein NbS00020576g0010.1 protein NbS00007016g0007.1 protein NbS00007016g0008.1 protein NbS00007016g0010.1 protein NbS00006569g0005.1 protein NbS00002120g0007.1 protein NbS00024985g0006.1 protein NbS00024985g0008.1 protein NbS00043523g0013.1 protein ; (*GB) gi|224099217|ref|XP_002311407.1| (e_value=9e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LEY9|NHP2_ARATH (e_value=1e-15) H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1;; (*TAIR) AT5G08180.2 (e_value=8e-17) | Symbols: | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein | chr5:2631843-2633374 REVERSE LENGTH=156;; (*ITAG) Solyc12g038980.1.1 (e_value=2e-24) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:37136481-37138218 transcript_region:SL2.40ch12:37136481..37138218- functional_description:"50S ribosomal protein L7Ae (AHRD V1 *--- RL7A_NANEQ); contains Interpro domain(s) IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 "; NbS00003509g0102.1 protein NbS00003509g0103.1 protein NbS00025846g0004.1 protein ; (*GB) gi|30696554|ref|NP_851193.1| (e_value=8e-19) potassium channel tetramerisation and pentapeptide repeat-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q9SE95|FIP2_ARATH (e_value=4e-20) FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2 PE=1 SV=1;; (*TAIR) AT5G55000.1 (e_value=2e-21) | Symbols: FIP2 | potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein | chr5:22318644-22321435 FORWARD LENGTH=290;; (*ITAG) Solyc10g076860.1.1 (e_value=2e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:59148140-59170739 transcript_region:SL2.40ch10:59148140..59170739+ go_terms:GO:0005515,GO:0016020 functional_description:"BTB/POZ domain-containing protein (AHRD V1 **-- Q55D73_DICDI); contains Interpro domain(s) IPR003131 Potassium channel, voltage dependent, Kv, tetramerisation "; GO:0005515,GO:0016020 NbS00025846g0006.1 protein NbS00008125g0002.1 protein ; (*ITAG) Solyc02g067570.2.1 (e_value=9e-15) genomic_reference:SL2.40ch02 gene_region:32299931-32312247 transcript_region:SL2.40ch02:32299931..32312247+ go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00060657g0001.1 protein NbS00015304g0004.1 protein NbS00010588g0009.1 protein NbS00050818g0004.1 protein ; (*GB) gi|225441347|ref|XP_002274658.1| (e_value=4e-20) PREDICTED: peptide chain release factor 2-like [Vitis vinifera];; (*TAIR) AT5G36170.2 (e_value=1e-14) | Symbols: HCF109, ATPRFB | high chlorophyll fluorescent 109 | chr5:14236083-14237974 REVERSE LENGTH=455;; (*ITAG) Solyc10g079840.1.1 (e_value=2e-36) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60644106-60648799 transcript_region:SL2.40ch10:60644106..60648799+ go_terms:GO:0005737,GO:0006415 functional_description:"Peptide chain release factor 2 (AHRD V1 ***- B6UHD9_MAIZE); contains Interpro domain(s) IPR005139 Peptide chain release factor "; GO:0005737,GO:0006415 NbS00026473g0004.1 protein NbS00008162g0005.1 protein NbS00010383g0017.1 protein ; (*GB) gi|225453877|ref|XP_002278630.1| (e_value=1e-19) PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera];; (*TAIR) AT1G63010.2 (e_value=2e-14) | Symbols: | Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein | chr1:23347972-23351026 REVERSE LENGTH=697;; (*ITAG) Solyc01g091870.2.1 (e_value=1e-25) genomic_reference:SL2.40ch01 gene_region:77173358-77180168 transcript_region:SL2.40ch01:77173358..77180168+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily domain-containing protein 8 (AHRD V1 *--- MFSD8_XENLA); contains Interpro domain(s) IPR004331 SPX, N-terminal "; GO:0055085 NbS00010383g0026.1 protein NbS00022543g0002.1 protein NbS00024955g0005.1 protein ; (*GB) gi|224140257|ref|XP_002323500.1| (e_value=3e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SR77|HBPL1_ARATH (e_value=7e-17) Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1;; (*TAIR) AT3G10130.1 (e_value=6e-18) | Symbols: | SOUL heme-binding family protein | chr3:3131122-3133158 REVERSE LENGTH=309;; (*ITAG) Solyc10g083350.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62513911-62518059 transcript_region:SL2.40ch10:62513911..62518059- functional_description:"Soul heme-binding family protein (AHRD V1 ***- D7L8V8_ARALY); contains Interpro domain(s) IPR006917 SOUL haem-binding protein "; NbS00009747g0008.1 protein NbC25792721g0002.1 protein ; (*GB) gi|297740203|emb|CBI30385.3| (e_value=2e-26) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G04680.1 (e_value=3e-18) | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G06350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:2372266-2373327 FORWARD LENGTH=261;; (*ITAG) Solyc01g007140.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00002308g0001.1 protein NbS00002308g0002.1 protein ; (*ITAG) Solyc11g005240.1.1 (e_value=6e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:197404-200197 transcript_region:SL2.40ch11:197404..200197- go_terms:GO:0003676 functional_description:"Sensitivity to red light reduced protein 1 (AHRD V1 *--- D7MSG2_ARALY); contains Interpro domain(s) IPR012942 SRR1 "; GO:0003676 NbS00007322g0007.1 protein NbS00007322g0008.1 protein NbS00059664g0005.1 protein ; (*GB) gi|134093252|ref|YP_001109553.1| (e_value=1e-18) hypothetical protein Poptr_cp075 [Populus trichocarpa]; NbS00038888g0004.1 protein ; (*GB) gi|45476405|dbj|BAD12555.1| (e_value=2e-21) T(S)14-3-3 protein [Nicotiana tabacum];; (*SWP) sp|Q41246|1433_TOBAC (e_value=8e-23) 14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT2G42590.2 (e_value=1e-23) | Symbols: GRF9, GF14 MU | general regulatory factor 9 | chr2:17732118-17733775 REVERSE LENGTH=262;; (*ITAG) Solyc04g074230.2.1 (e_value=3e-22) genomic_reference:SL2.40ch04 gene_region:57813201-57817028 transcript_region:SL2.40ch04:57813201..57817028- go_terms:GO:0050815 functional_description:"14-3-3 protein sigma gamma zeta beta/alpha (AHRD V1 **-- Q16QZ7_AEDAE); contains Interpro domain(s) IPR000308 14-3-3 protein "; GO:0050815 NbS00040528g0003.1 protein NbS00016147g0003.1 protein NbS00049887g0002.1 protein NbS00019845g0005.1 protein NbS00019845g0007.1 protein NbS00001620g0004.1 protein NbS00021392g0002.1 protein NbS00007021g0005.1 protein NbS00007021g0113.1 protein NbS00007021g0105.1 protein NbS00007021g0106.1 protein NbS00013051g0111.1 protein NbS00000554g0003.1 protein NbS00000554g0106.1 protein NbS00011986g0002.1 protein NbS00011808g0002.1 protein NbS00000476g0006.1 protein ; (*GB) gi|255539773|ref|XP_002510951.1| (e_value=6e-28) Glycerol-3-phosphate transporter, putative [Ricinus communis];; (*SWP) sp|Q9C5L3|GLPT1_ARATH (e_value=2e-27) Putative glycerol-3-phosphate transporter 1 OS=Arabidopsis thaliana GN=At3g47420 PE=2 SV=1;; (*TAIR) AT3G47420.1 (e_value=1e-28) | Symbols: ATPS3, PS3 | phosphate starvation-induced gene 3 | chr3:17472541-17474209 REVERSE LENGTH=523;; (*ITAG) Solyc06g034290.2.1 (e_value=1e-30) genomic_reference:SL2.40ch06 gene_region:20709482-20711362 transcript_region:SL2.40ch06:20709482..20711362+ go_terms:GO:0005351,GO:0015169 functional_description:"Glycerol-3-phosphate transporter (AHRD V1 **** A0PYC4_CLONN); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351,GO:0015169 NbS00029087g0001.1 protein NbS00005230g0006.1 protein NbS00025591g0003.1 protein NbS00053337g0001.1 protein NbS00006607g0005.1 protein NbS00006607g0109.1 protein NbS00003514g0011.1 protein NbS00003514g0010.1 protein ; (*ITAG) Solyc06g006040.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:1046255-1049656 transcript_region:SL2.40ch06:1046255..1049656- go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00053163g0001.1 protein NbS00031184g0006.1 protein NbS00046524g0001.1 protein NbS00019638g0004.1 protein NbS00017381g0004.1 protein ; (*GB) gi|12643044|gb|AAK00433.1|AC060755_3 (e_value=5e-27) putative AT-Hook DNA-binding protein [Oryza sativa Japonica Group];; (*TAIR) AT4G12080.1 (e_value=5e-27) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356;; (*ITAG) Solyc12g094710.1.1 (e_value=2e-34) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63190934-63194536 transcript_region:SL2.40ch12:63190934..63194536- go_terms:GO:0003677 functional_description:"AT-hook motif nuclear localized protein 2 (AHRD V1 *-*- A1A6F0_ORYSJ); contains Interpro domain(s) IPR005175 Protein of unknown function DUF296 "; GO:0003677 NbS00015784g0004.1 protein NbS00015784g0005.1 protein NbS00040124g0004.1 protein NbS00040124g0005.1 protein ; (*GB) gi|357511647|ref|XP_003626112.1| (e_value=5e-15) Transmembrane protein 184A [Medicago truncatula];; (*TAIR) AT3G05940.1 (e_value=2e-12) | Symbols: | Protein of unknown function (DUF300) | chr3:1777592-1779648 REVERSE LENGTH=422;; (*ITAG) Solyc01g102480.2.1 (e_value=3e-17) genomic_reference:SL2.40ch01 gene_region:83027860-83035379 transcript_region:SL2.40ch01:83027860..83035379- go_terms:GO:0005215 functional_description:"Transmembrane protein 34 (AHRD V1 ***- C0H9K2_SALSA); contains Interpro domain(s) IPR005178 Protein of unknown function DUF300 "; GO:0005215 NbS00013438g0004.1 protein NbS00013438g0005.1 protein ; (*ITAG) Solyc10g047840.1.1 (e_value=3e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00026065g0004.1 protein NbS00026065g0005.1 protein ; (*GB) gi|218192688|gb|EEC75115.1| (e_value=9e-18) hypothetical protein OsI_11295 [Oryza sativa Indica Group];; (*SWP) sp|O22899|DHX15_ARATH (e_value=4e-19) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1;; (*TAIR) AT2G47250.1 (e_value=3e-20) | Symbols: | RNA helicase family protein | chr2:19399923-19402981 REVERSE LENGTH=729;; (*ITAG) Solyc01g079250.2.1 (e_value=9e-20) genomic_reference:SL2.40ch01 gene_region:70850920-70856753 transcript_region:SL2.40ch01:70850920..70856753- go_terms:GO:0004004 functional_description:"mRNA splicing factor ATP-dependent RNA helicase (AHRD V1 **** Q2UED4_ASPOR); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004 NbS00040744g0007.1 protein NbS00019960g0003.1 protein NbS00028368g0002.1 protein NbS00028368g0103.1 protein NbS00028368g0104.1 protein NbS00028368g0105.1 protein NbS00012500g0013.1 protein NbS00009214g0002.1 protein ; (*GB) gi|147773471|emb|CAN77952.1| (e_value=1e-19) hypothetical protein VITISV_038394 [Vitis vinifera];; (*TAIR) AT4G38470.1 (e_value=6e-19) | Symbols: | ACT-like protein tyrosine kinase family protein | chr4:17999432-18003551 FORWARD LENGTH=575;; (*ITAG) Solyc12g094410.1.1 (e_value=3e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00043736g0002.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-12) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=9e-21) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbC25954870g0001.1 protein ; (*ITAG) Solyc11g065870.1.1 (e_value=6e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48525816-48539876 transcript_region:SL2.40ch11:48525816..48539876+ go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein engA (AHRD V1 ***- Q9LH58_ARATH); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0005525,GO:0005622 NbS00015170g0004.1 protein NbS00015170g0005.1 protein ; (*GB) gi|62319829|dbj|BAD93855.1| (e_value=3e-21) hypothetical protein [Arabidopsis thaliana];; (*TAIR) AT3G13290.1 (e_value=1e-22) | Symbols: VCR | varicose-related | chr3:4297529-4303113 FORWARD LENGTH=1340;; (*ITAG) Solyc10g005920.2.1 (e_value=1e-21) genomic_reference:SL2.40ch10 gene_region:709875-721808 transcript_region:SL2.40ch10:709875..721808+ go_terms:GO:0000166,GO:0042803 functional_description:"Enhancer of mRNA-decapping protein 4 (AHRD V1 *--- EDC4_DANRE); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166,GO:0042803 NbS00000517g0003.1 protein NbS00054404g0006.1 protein ; (*GB) gi|325087305|gb|ADY77002.1| (e_value=9e-20) iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas];; (*SWP) sp|Q9C8J2|NIFU5_ARATH (e_value=9e-17) NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1;; (*TAIR) AT1G51390.1 (e_value=6e-18) | Symbols: NFU5, ATNFU1 | NFU domain protein 5 | chr1:19050427-19051753 FORWARD LENGTH=275;; (*ITAG) Solyc11g007120.1.1 (e_value=3e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1576541-1580907 transcript_region:SL2.40ch11:1576541..1580907+ go_terms:GO:0005515,GO:0005198 functional_description:"Fe/S biogenesis protein nfuA (AHRD V1 *--- NFUA_HAMD5); contains Interpro domain(s) IPR017065 HIRA-interacting protein 5 "; GO:0005515,GO:0005198 NbS00013988g0007.1 protein ; (*GB) gi|255540397|ref|XP_002511263.1| (e_value=9e-30) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=2e-30) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=1e-31) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111560.2.1 (e_value=5e-41) genomic_reference:SL2.40ch03 gene_region:56209301-56240154 transcript_region:SL2.40ch03:56209301..56240154+ functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00012839g0005.1 protein NbS00012839g0007.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-24) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00012839g0008.1 protein NbS00001170g0004.1 protein ; (*GB) gi|350534792|ref|NP_001233904.1| (e_value=4e-27) nonclathrin coat protein zeta2-COP [Solanum lycopersicum];; (*SWP) sp|Q940S5|COPZ1_ARATH (e_value=4e-23) Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1;; (*TAIR) AT1G60970.1 (e_value=3e-24) | Symbols: | SNARE-like superfamily protein | chr1:22448008-22449387 REVERSE LENGTH=177;; (*ITAG) Solyc12g044910.1.1 (e_value=8e-30) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:45713755-45716680 transcript_region:SL2.40ch12:45713755..45716680- go_terms:GO:0005515 functional_description:"Coatomer subunit zeta-1 (AHRD V1 ***- B6UH71_MAIZE); contains Interpro domain(s) IPR011012 Longin-like "; GO:0005515 NbS00051752g0004.1 protein NbS00051752g0006.1 protein NbS00051752g0007.1 protein NbS00007336g0004.1 protein NbS00031720g0004.1 protein NbS00031720g0005.1 protein NbS00031720g0008.1 protein NbS00018885g0007.1 protein NbS00030289g0007.1 protein NbS00030289g0008.1 protein NbS00041386g0006.1 protein NbS00022643g0002.1 protein NbS00019394g0005.1 protein NbS00019394g0006.1 protein NbS00007017g0011.1 protein NbS00007017g0009.1 protein ; (*ITAG) Solyc04g026200.2.1 (e_value=7e-24) genomic_reference:SL2.40ch04 gene_region:25106257-25136392 transcript_region:SL2.40ch04:25106257..25136392+ go_terms:GO:0016929 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-** B6TMK2_MAIZE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0016929 NbS00009722g0003.1 protein NbS00000887g0011.1 protein NbS00000887g0006.1 protein NbS00000887g0008.1 protein NbS00000887g0010.1 protein NbS00024410g0002.1 protein NbS00025913g0008.1 protein NbS00025972g0005.1 protein NbS00025972g0007.1 protein ; (*GB) gi|225431966|ref|XP_002278360.1| (e_value=6e-30) PREDICTED: uncharacterized protein LOC100256793 [Vitis vinifera];; (*TAIR) AT1G67890.1 (e_value=1e-30) | Symbols: | PAS domain-containing protein tyrosine kinase family protein | chr1:25457345-25462436 FORWARD LENGTH=765;; (*ITAG) Solyc01g059860.2.1 (e_value=3e-44) genomic_reference:SL2.40ch01 gene_region:61725129-61733391 transcript_region:SL2.40ch01:61725129..61733391- go_terms:GO:0000160,GO:0006468,GO:0006355,GO:0007165 functional_description:"Kinase family protein (AHRD V1 ***- D7L5X4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0000160,GO:0006468,GO:0006355,GO:0007165 NbS00025972g0008.1 protein NbS00044840g0005.1 protein NbS00044840g0006.1 protein NbS00005785g0005.1 protein NbS00005785g0006.1 protein NbS00049745g0007.1 protein NbS00035306g0005.1 protein ; (*GB) gi|676884|dbj|BAA06151.1| (e_value=3e-17) pit2 [Nicotiana tabacum];; (*TAIR) AT1G71950.1 (e_value=2e-15) | Symbols: | Proteinase inhibitor, propeptide | chr1:27080453-27081573 REVERSE LENGTH=136;; (*ITAG) Solyc11g018590.1.1 (e_value=1e-23) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:8761757-8762969 transcript_region:SL2.40ch11:8761757..8762969+ go_terms:GO:0043086 functional_description:"Subtilase family protein (AHRD V1 **-- D7LYP9_ARALY); contains Interpro domain(s) IPR010259 Proteinase inhibitor I9, subtilisin propeptide "; GO:0043086 NbS00004489g0002.1 protein NbS00004489g0003.1 protein NbS00055554g0001.1 protein NbS00030406g0005.1 protein NbS00000829g0011.1 protein ; (*GB) gi|350536389|ref|NP_001234756.1| (e_value=1e-22) oxoglutarate/malate translocator [Solanum lycopersicum];; (*TAIR) AT5G19760.1 (e_value=2e-23) | Symbols: | Mitochondrial substrate carrier family protein | chr5:6679591-6681845 REVERSE LENGTH=298;; (*ITAG) Solyc01g005620.2.1 (e_value=3e-25) genomic_reference:SL2.40ch01 gene_region:430522-435101 transcript_region:SL2.40ch01:430522..435101- go_terms:GO:0015367 functional_description:"Mitochondrial 2-oxoglutarate/malate carrier protein (AHRD V1 **** Q9FSF4_TOBAC); contains Interpro domain(s) IPR001993 Mitochondrial substrate carrier "; GO:0015367 NbS00049334g0005.1 protein ; (*GB) gi|334184459|ref|NP_180137.3| (e_value=2e-52) embryo defective 2410 protein [Arabidopsis thaliana];; (*TAIR) AT2G25660.1 (e_value=5e-55) | Symbols: emb2410 | embryo defective 2410 | chr2:10916456-10927390 REVERSE LENGTH=2166;; (*ITAG) Solyc08g067870.1.1 (e_value=8e-62) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch08 gene_region:54128245-54135104 transcript_region:SL2.40ch08:54128245..54135104- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q016Y8_OSTTA)"; NbS00038438g0005.1 protein NbS00038438g0007.1 protein ; (*GB) gi|113205244|gb|AAT39318.2| (e_value=6e-14) hypothetical protein SDM1_28t00022 [Solanum demissum];; (*ITAG) Solyc08g016280.1.1 (e_value=2e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7052445-7056982 transcript_region:SL2.40ch08:7052445..7056982+ go_terms:GO:0006508 functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00047836g0009.1 protein NbS00034386g0003.1 protein ; (*ITAG) Solyc03g033640.2.1 (e_value=7e-18) genomic_reference:SL2.40ch03 gene_region:9510556-9517463 transcript_region:SL2.40ch03:9510556..9517463+ functional_description:"DUF726 domain-containing protein (AHRD V1 *-*- C5GEI0_AJEDR); contains Interpro domain(s) IPR007941 Protein of unknown function DUF726 "; NbS00050383g0004.1 protein NbS00029228g0001.1 protein NbS00004866g0005.1 protein NbS00011471g0006.1 protein NbS00020684g0003.1 protein ; (*GB) gi|225438428|ref|XP_002276437.1| (e_value=7e-21) PREDICTED: uncharacterized protein LOC100266179 [Vitis vinifera];; (*TAIR) AT5G65960.1 (e_value=2e-22) | Symbols: | GTP binding | chr5:26385413-26387197 FORWARD LENGTH=393;; (*ITAG) Solyc03g032050.2.1 (e_value=2e-29) genomic_reference:SL2.40ch03 gene_region:8840935-8849212 transcript_region:SL2.40ch03:8840935..8849212+ functional_description:"Genomic DNA chromosome 5 TAC clone K2A18 (AHRD V1 **-- Q9FKY6_ARATH); contains Interpro domain(s) IPR019341 Alpha- and gamma-adaptin-binding protein p34 "; NbS00027729g0005.1 protein NbS00018631g0003.1 protein ; (*GB) gi|2145481|emb|CAA62747.1| (e_value=1e-38) phosphoenolpyruvate carboxylase [Welwitschia mirabilis];; (*SWP) sp|P16097|CAPP2_MESCR (e_value=1e-38) Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1;; (*TAIR) AT2G42600.1 (e_value=2e-39) | Symbols: ATPPC2, PPC2 | phosphoenolpyruvate carboxylase 2 | chr2:17734541-17738679 REVERSE LENGTH=963;; (*ITAG) Solyc12g014250.1.1 (e_value=4e-39) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:5069479-5074778 transcript_region:SL2.40ch12:5069479..5074778- go_terms:GO:0006099,GO:0003824 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- Q9SCB3_SOLLC); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0006099,GO:0003824 NbS00018631g0005.1 protein ; (*GB) gi|629594|pir||PC2170 (e_value=5e-31) phosphoenolpyruvate carboxykinase (diphosphate) (EC 4.1.1.38), PE19 - rape (fragments);; (*SWP) sp|Q01647|CAPP1_FLAPR (e_value=1e-29) Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1;; (*TAIR) AT2G42600.1 (e_value=1e-30) | Symbols: ATPPC2, PPC2 | phosphoenolpyruvate carboxylase 2 | chr2:17734541-17738679 REVERSE LENGTH=963;; (*ITAG) Solyc07g055060.2.1 (e_value=1e-30) genomic_reference:SL2.40ch07 gene_region:60510756-60518074 transcript_region:SL2.40ch07:60510756..60518074- go_terms:GO:0005515 functional_description:"Phosphoenolpyruvate carboxylase 1 (AHRD V1 ***- O23946_GOSHI); contains Interpro domain(s) IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core IPR001449 Phosphoenolpyruvate carboxylase "; GO:0005515 NbS00038439g0003.1 protein NbC26141562g0002.1 protein NbS00024946g0103.1 protein NbS00024946g0203.1 protein NbS00030927g0003.1 protein NbS00024170g0002.1 protein NbS00002632g0001.1 protein NbS00011189g0004.1 protein NbS00011189g0104.1 protein NbS00004227g0110.1 protein NbS00031166g0010.1 protein ; (*GB) gi|294440430|gb|ADE74632.1| (e_value=5e-14) aspartic protease 1 [Nicotiana tabacum];; (*ITAG) Solyc01g101240.2.1 (e_value=1e-14) genomic_reference:SL2.40ch01 gene_region:82818855-82824013 transcript_region:SL2.40ch01:82818855..82824013+ go_terms:GO:0004190 functional_description:"Aspartic proteinase (AHRD V1 **** ASPRX_ORYSJ); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0004190 NbS00034812g0004.1 protein NbS00011579g0012.1 protein NbS00011579g0010.1 protein NbS00026886g0002.1 protein ; (*GB) gi|359474648|ref|XP_002263148.2| (e_value=8e-43) PREDICTED: alpha-glucosidase 2-like [Vitis vinifera];; (*TAIR) AT3G23640.2 (e_value=1e-39) | Symbols: HGL1 | heteroglycan glucosidase 1 | chr3:8502355-8509358 FORWARD LENGTH=991;; (*ITAG) Solyc08g075530.2.1 (e_value=4e-55) genomic_reference:SL2.40ch08 gene_region:56858251-56874699 transcript_region:SL2.40ch08:56858251..56874699+ go_terms:GO:0004558 functional_description:"Alpha glucosidase-like protein (AHRD V1 **** Q93Y12_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00026886g0003.1 protein ; (*GB) gi|356508232|ref|XP_003522863.1| (e_value=2e-79) PREDICTED: alpha-glucosidase 2-like [Glycine max];; (*TAIR) AT3G23640.2 (e_value=6e-77) | Symbols: HGL1 | heteroglycan glucosidase 1 | chr3:8502355-8509358 FORWARD LENGTH=991;; (*ITAG) Solyc08g075530.2.1 (e_value=1e-108) genomic_reference:SL2.40ch08 gene_region:56858251-56874699 transcript_region:SL2.40ch08:56858251..56874699+ go_terms:GO:0004558 functional_description:"Alpha glucosidase-like protein (AHRD V1 **** Q93Y12_ARATH); contains Interpro domain(s) IPR000322 Glycoside hydrolase, family 31 "; GO:0004558 NbS00016349g0004.1 protein NbS00006698g0009.1 protein NbS00003747g0006.1 protein ; (*GB) gi|5834502|dbj|BAA84085.1| (e_value=9e-60) potassium channel [Nicotiana paniculata];; (*SWP) sp|Q38898|AKT2_ARATH (e_value=3e-52) Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1;; (*TAIR) AT4G22200.1 (e_value=2e-53) | Symbols: AKT2/3, AKT3, AKT2, KT2/3 | potassium transport 2/3 | chr4:11746666-11750091 REVERSE LENGTH=802;; (*ITAG) Solyc01g104030.2.1 (e_value=3e-61) genomic_reference:SL2.40ch01 gene_region:84255077-84260752 transcript_region:SL2.40ch01:84255077..84260752- go_terms:GO:0005242 functional_description:"Inward rectifier potassium channel-like protein (Fragment) (AHRD V1 *-** Q1W7D1_SOLLC); contains Interpro domain(s) IPR000595 Cyclic nucleotide-binding "; GO:0005242 NbS00021532g0011.1 protein ; (*GB) gi|356576591|ref|XP_003556414.1| (e_value=8e-42) PREDICTED: T-complex protein 1 subunit gamma-like [Glycine max];; (*SWP) sp|O00782|TCPG_OXYGR (e_value=2e-35) T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1;; (*TAIR) AT5G26360.1 (e_value=2e-42) | Symbols: | TCP-1/cpn60 chaperonin family protein | chr5:9255561-9258891 REVERSE LENGTH=555;; (*ITAG) Solyc05g056310.2.1 (e_value=2e-48) genomic_reference:SL2.40ch05 gene_region:64792047-64799309 transcript_region:SL2.40ch05:64792047..64799309+ go_terms:GO:0051082 functional_description:"T-complex protein 1 subunit gamma (AHRD V1 ***- B6UCD0_MAIZE); contains Interpro domain(s) IPR012719 T-complex protein 1, gamma subunit "; GO:0051082 NbS00034363g0012.1 protein NbS00015113g0103.1 protein NbS00017428g0002.1 protein NbS00033321g0001.1 protein ; (*GB) gi|296082384|emb|CBI21389.3| (e_value=8e-29) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G67170.1 (e_value=6e-27) | Symbols: | SEC-C motif-containing protein / OTU-like cysteine protease family protein | chr5:26799851-26801763 FORWARD LENGTH=375;; (*ITAG) Solyc03g044370.2.1 (e_value=8e-35) genomic_reference:SL2.40ch03 gene_region:12859890-12876072 transcript_region:SL2.40ch03:12859890..12876072- go_terms:GO:0008234 functional_description:"OTU domain containing protein (AHRD V1 *-*- D3B1E5_POLPA); contains Interpro domain(s) IPR003323 Ovarian tumour, otubain "; GO:0008234 NbS00000162g0004.1 protein NbS00006657g0002.1 protein NbS00006657g0003.1 protein NbS00041567g0005.1 protein NbS00009619g0004.1 protein NbS00009619g0005.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-15) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00009619g0105.1 protein NbS00009619g0108.1 protein NbS00009619g0110.1 protein NbS00009619g0205.1 protein NbS00010062g0006.1 protein ; (*GB) gi|164685602|gb|ABY66747.1| (e_value=2e-17) atp1, partial (mitochondrion) [Kallstroemia parviflora];; (*SWP) sp|P05495|ATPAM_NICPL (e_value=4e-18) ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPA PE=3 SV=1;; (*TAIR) AT2G07698.1 (e_value=8e-19) | Symbols: | ATPase, F1 complex, alpha subunit protein | chr2:3361474-3364028 FORWARD LENGTH=777;; (*ITAG) Solyc00g042130.1.1 (e_value=2e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:13249935-13252107 transcript_region:SL2.40ch00:13249935..13252107+ go_terms:GO:0045261,GO:0005524,GO:0033178,GO:0016469 functional_description:"ATP synthase subunit alpha (AHRD V1 ***- D4Z4I4_SPHJU); contains Interpro domain(s) IPR005294 ATPase, F1 complex, alpha subunit "; GO:0045261,GO:0005524,GO:0033178,GO:0016469 NbS00016114g0003.1 protein NbC23860750g0001.1 protein ; (*GB) gi|356495635|ref|XP_003516680.1| (e_value=4e-26) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460-like [Glycine max];; (*SWP) sp|C0LGE4|Y1124_ARATH (e_value=1e-21) Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1;; (*TAIR) AT1G12460.1 (e_value=1e-22) | Symbols: | Leucine-rich repeat protein kinase family protein | chr1:4247703-4250444 FORWARD LENGTH=882;; (*ITAG) Solyc08g079740.2.1 (e_value=5e-32) genomic_reference:SL2.40ch08 gene_region:60398063-60401307 transcript_region:SL2.40ch08:60398063..60401307+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00035374g0006.1 protein NbS00011147g0006.1 protein ; (*GB) gi|255570558|ref|XP_002526236.1| (e_value=7e-19) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G38670.1 (e_value=1e-14) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc05g046300.2.1 (e_value=1e-20) genomic_reference:SL2.40ch05 gene_region:57663150-57670677 transcript_region:SL2.40ch05:57663150..57670677+ go_terms:GO:0004306 functional_description:"Ethanolamine-phosphate cytidylyltransferase (AHRD V1 **** C5DB57_VITVI); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306 NbC25640530g0001.1 protein ; (*GB) gi|255581582|ref|XP_002531596.1| (e_value=3e-26) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=5e-16) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.2 (e_value=3e-17) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926535-8927722 FORWARD LENGTH=395;; (*ITAG) Solyc02g078330.2.1 (e_value=4e-35) genomic_reference:SL2.40ch02 gene_region:37634979-37638173 transcript_region:SL2.40ch02:37634979..37638173- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00013412g0004.1 protein NbS00013412g0006.1 protein NbS00052378g0003.1 protein ; (*GB) gi|255538354|ref|XP_002510242.1| (e_value=8e-19) protein phosphatase, putative [Ricinus communis];; (*SWP) sp|Q67J17|P2C69_ORYSJ (e_value=3e-18) Probable protein phosphatase 2C 69 OS=Oryza sativa subsp. japonica GN=Os09g0459600 PE=2 SV=1;; (*TAIR) AT1G47380.1 (e_value=2e-16) | Symbols: | Protein phosphatase 2C family protein | chr1:17373004-17375305 REVERSE LENGTH=428;; (*ITAG) Solyc07g024020.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:23849204-23851458 transcript_region:SL2.40ch07:23849204..23851458+ go_terms:GO:0003824 functional_description:"Protein phosphatase 2C containing protein expressed (AHRD V1 ***- Q94LH3_ORYSJ); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0003824 NbS00049128g0002.1 protein NbS00024280g0008.1 protein NbS00004484g0004.1 protein NbS00045712g0002.1 protein ; (*GB) gi|356536107|ref|XP_003536581.1| (e_value=5e-32) PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max];; (*SWP) sp|Q9XJ35|CLPR1_ARATH (e_value=2e-27) ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1;; (*TAIR) AT1G49970.1 (e_value=1e-28) | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic subunit 1 | chr1:18501936-18504462 REVERSE LENGTH=387;; (*ITAG) Solyc10g049710.1.1 (e_value=1e-31) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:41900268-41905411 transcript_region:SL2.40ch10:41900268..41905411+ go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- B9HMY7_POPTR); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00006132g0007.1 protein NbS00049991g0002.1 protein NbS00014519g0011.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-12) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00011507g0007.1 protein ; (*GB) gi|297743484|emb|CBI36351.3| (e_value=2e-45) unnamed protein product [Vitis vinifera];; (*SWP) sp|P08770|TRA1_MAIZE (e_value=4e-12) Putative AC transposase OS=Zea mays PE=2 SV=2;; (*TAIR) AT3G42170.1 (e_value=9e-34) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc03g116840.1.1 (e_value=3e-73) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:60155425-60161124 transcript_region:SL2.40ch03:60155425..60161124+ go_terms:GO:0016855,GO:0003677,GO:0046983 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KHY5_ARALY); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0016855,GO:0003677,GO:0046983 NbS00026154g0001.1 protein NbS00050320g0007.1 protein NbS00050320g0008.1 protein NbS00050320g0010.1 protein NbS00039178g0013.1 protein NbS00039178g0015.1 protein NbS00039178g0018.1 protein ; (*GB) gi|109289916|gb|ABG29322.1| (e_value=8e-38) DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum bulbocastanum];; (*SWP) sp|Q9LK40|RPD2A_ARATH (e_value=6e-27) DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana GN=NRPD2a PE=1 SV=1;; (*TAIR) AT3G23780.2 (e_value=5e-28) | Symbols: NRPD2A | nuclear RNA polymerase D2A | chr3:8567971-8573819 REVERSE LENGTH=1172;; (*ITAG) Solyc03g110880.2.1 (e_value=6e-39) genomic_reference:SL2.40ch03 gene_region:55658526-55675126 transcript_region:SL2.40ch03:55658526..55675126+ go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00039178g0007.1 protein NbS00054199g0001.1 protein NbS00018566g0001.1 protein ; (*GB) gi|147854936|emb|CAN80270.1| (e_value=5e-26) hypothetical protein VITISV_020032 [Vitis vinifera];; (*SWP) sp|Q8LFN2|Y3037_ARATH (e_value=8e-23) Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1;; (*TAIR) AT3G03770.2 (e_value=6e-24) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:945303-948436 REVERSE LENGTH=802;; (*ITAG) Solyc01g068360.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:69962432-69966964 transcript_region:SL2.40ch01:69962432..69966964+ go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00035593g0003.1 protein ; (*ITAG) Solyc07g063370.2.1 (e_value=2e-17) genomic_reference:SL2.40ch07 gene_region:63074862-63078665 transcript_region:SL2.40ch07:63074862..63078665- go_terms:GO:0047782 functional_description:"Beta-glucosidase (AHRD V1 **** B6SYQ7_MAIZE); contains Interpro domain(s) IPR001360 Glycoside hydrolase, family 1 "; GO:0047782 NbS00008473g0003.1 protein NbS00008473g0007.1 protein NbS00001158g0003.1 protein NbS00001158g0005.1 protein ; (*GB) gi|224141771|ref|XP_002324238.1| (e_value=2e-78) predicted protein [Populus trichocarpa];; (*TAIR) AT5G11540.1 (e_value=2e-59) | Symbols: | D-arabinono-1,4-lactone oxidase family protein | chr5:3703002-3704981 REVERSE LENGTH=585;; (*ITAG) Solyc08g068420.2.1 (e_value=2e-109) genomic_reference:SL2.40ch08 gene_region:54775107-54778506 transcript_region:SL2.40ch08:54775107..54778506- go_terms:GO:0016020,GO:0050660 functional_description:"FAD-linked oxidoreductase (AHRD V1 ***- C7Q9M7_CATAD); contains Interpro domain(s) IPR010030 Plant-specific FAD-dependent oxidoreductase "; GO:0016020,GO:0050660 NbS00003134g0009.1 protein NbS00003134g0108.1 protein NbS00003134g0205.1 protein NbS00003134g0206.1 protein NbS00003134g0208.1 protein NbS00014360g0004.1 protein NbS00029696g0009.1 protein NbS00049430g0002.1 protein NbC25373325g0001.1 protein ; (*GB) gi|225425222|ref|XP_002266814.1| (e_value=2e-24) PREDICTED: CCA-adding enzyme [Vitis vinifera];; (*TAIR) AT5G23690.1 (e_value=2e-25) | Symbols: | Polynucleotide adenylyltransferase family protein | chr5:7987664-7990466 FORWARD LENGTH=527;; (*ITAG) Solyc01g009670.2.1 (e_value=2e-28) genomic_reference:SL2.40ch01 gene_region:3907694-3914001 transcript_region:SL2.40ch01:3907694..3914001- go_terms:GO:0006396 functional_description:"CCA-adding enzyme (AHRD V1 *-*- CCA_STAES); contains Interpro domain(s) IPR002646 Polynucleotide adenylyltransferase region "; GO:0006396 NbS00013650g0102.1 protein NbS00013650g0103.1 protein NbS00013650g0104.1 protein NbS00013650g0105.1 protein NbS00013650g0106.1 protein NbS00043455g0002.1 protein NbS00012126g0001.1 protein ; (*GB) gi|255547850|ref|XP_002514982.1| (e_value=1e-15) 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis];; (*TAIR) AT1G24430.1 (e_value=1e-12) | Symbols: | HXXXD-type acyl-transferase family protein | chr1:8658190-8659497 REVERSE LENGTH=435;; (*ITAG) Solyc01g105550.1.1 (e_value=7e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:85449541-85450899 transcript_region:SL2.40ch01:85449541..85450899+ go_terms:GO:0016740 functional_description:"Hydroxycinnamoyl CoA quinate transferase (AHRD V1 **-* D6BK69_CYNSC); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00000989g0005.1 protein NbS00007572g0005.1 protein NbS00018215g0003.1 protein NbS00023650g0001.1 protein NbS00023650g0101.1 protein NbS00030954g0002.1 protein ; (*ITAG) Solyc12g017830.1.1 (e_value=5e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:7453809-7490925 transcript_region:SL2.40ch12:7453809..7490925+ go_terms:GO:0005086 functional_description:"Sec7 guanine nucleotide exchange factor (AHRD V1 **-* B0CY77_LACBS); contains Interpro domain(s) IPR000904 SEC7-like "; GO:0005086 NbS00050728g0004.1 protein NbS00039420g0003.1 protein NbS00030214g0001.1 protein NbS00024429g0009.1 protein NbS00000740g0115.1 protein NbS00000740g0116.1 protein NbS00000740g0107.1 protein NbS00000740g0108.1 protein NbS00000740g0109.1 protein NbS00028553g0004.1 protein NbS00050749g0005.1 protein NbS00015301g0003.1 protein NbS00013980g0008.1 protein NbS00025277g0002.1 protein NbS00025277g0003.1 protein NbS00025277g0005.1 protein ; (*GB) gi|296090290|emb|CBI40109.3| (e_value=5e-34) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9LVD4|ORP4C_ARATH (e_value=3e-25) Oxysterol-binding protein-related protein 4C OS=Arabidopsis thaliana GN=ORP4C PE=2 SV=1;; (*TAIR) AT5G57240.2 (e_value=2e-26) | Symbols: ORP4C | OSBP(oxysterol binding protein)-related protein 4C | chr5:23193449-23195303 FORWARD LENGTH=379;; (*ITAG) Solyc07g008920.2.1 (e_value=3e-43) genomic_reference:SL2.40ch07 gene_region:3917140-3925087 transcript_region:SL2.40ch07:3917140..3925087+ go_terms:GO:0008142 functional_description:"Oxysterol-binding protein (AHRD V1 **** Q2HUM2_MEDTR); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008142 NbS00053943g0004.1 protein NbS00028953g0102.1 protein NbS00000939g0008.1 protein NbS00022722g0005.1 protein NbS00045602g0001.1 protein NbS00004283g0006.1 protein NbS00004283g0007.1 protein ; (*GB) gi|356537581|ref|XP_003537305.1| (e_value=2e-56) PREDICTED: ubiquitin-activating enzyme E1 1-like [Glycine max];; (*SWP) sp|P92974|UBE12_ARATH (e_value=1e-54) Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1;; (*TAIR) AT5G06460.1 (e_value=1e-55) | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme 2 | chr5:1970239-1974382 FORWARD LENGTH=1077;; (*ITAG) Solyc06g007320.2.1 (e_value=9e-62) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbC23380142g0001.1 protein ; (*ITAG) Solyc01g112050.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:89925103-89931698 transcript_region:SL2.40ch01:89925103..89931698- functional_description:"Bzip transcription factor-like (AHRD V1 *-*- Q8RU34_ORYSJ); contains Interpro domain(s) IPR006867 Protein of unknown function DUF632 "; NbS00023138g0003.1 protein NbS00058620g0004.1 protein NbS00025584g0008.1 protein ; (*GB) gi|224115438|ref|XP_002332135.1| (e_value=4e-43) predicted protein [Populus trichocarpa];; (*TAIR) AT1G10180.1 (e_value=4e-27) | Symbols: | BEST Arabidopsis thaliana protein match is: exocyst complex component 84B (TAIR:AT5G49830.1); Has 132 Blast hits to 132 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:3338381-3341494 REVERSE LENGTH=769;; (*ITAG) Solyc02g069080.2.1 (e_value=5e-55) genomic_reference:SL2.40ch02 gene_region:33622504-33631103 transcript_region:SL2.40ch02:33622504..33631103- functional_description:"Unknown Protein (AHRD V1)"; NbS00000227g0004.1 protein NbS00035195g0003.1 protein ; (*GB) gi|147821313|emb|CAN65669.1| (e_value=4e-16) hypothetical protein VITISV_002859 [Vitis vinifera];; (*SWP) sp|Q9FII5|TDR_ARATH (e_value=5e-15) Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1;; (*TAIR) AT5G61480.1 (e_value=4e-16) | Symbols: PXY | Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041;; (*ITAG) Solyc05g051640.2.1 (e_value=2e-19) genomic_reference:SL2.40ch05 gene_region:61175509-61181215 transcript_region:SL2.40ch05:61175509..61181215+ go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00000130g0002.1 protein NbS00005308g0006.1 protein NbS00005308g0010.1 protein NbS00003129g0002.1 protein NbS00003129g0003.1 protein NbS00011465g0003.1 protein NbS00039039g0001.1 protein NbS00008753g0006.1 protein NbS00058029g0006.1 protein ; (*GB) gi|357447995|ref|XP_003594273.1| (e_value=8e-20) hypothetical protein MTR_2g026500 [Medicago truncatula];; (*TAIR) AT4G16450.2 (e_value=2e-18) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. | chr4:9280132-9280541 FORWARD LENGTH=106;; (*ITAG) Solyc07g065280.2.1 (e_value=6e-25) genomic_reference:SL2.40ch07 gene_region:64327845-64329026 transcript_region:SL2.40ch07:64327845..64329026- functional_description:"Os08g0431500 protein (Fragment) (AHRD V1 ***- Q0J5I8_ORYSJ)"; NbS00035951g0002.1 protein NbS00035951g0003.1 protein NbS00005553g0001.1 protein NbS00005553g0103.1 protein NbS00014787g0012.1 protein NbS00009817g0003.1 protein NbS00009817g0004.1 protein NbS00009817g0112.1 protein NbS00009817g0114.1 protein NbS00009817g0115.1 protein NbS00009817g0118.1 protein NbS00043769g0001.1 protein NbS00006829g0003.1 protein NbS00006829g0004.1 protein NbS00042364g0004.1 protein ; (*GB) gi|224054827|ref|XP_002298371.1| (e_value=1e-86) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJE6|PP437_ARATH (e_value=1e-76) Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1;; (*TAIR) AT5G59900.1 (e_value=1e-77) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24123983-24126706 REVERSE LENGTH=907;; (*ITAG) Solyc11g073270.1.1 (e_value=9e-131) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53362050-53364725 transcript_region:SL2.40ch11:53362050..53364725- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00014192g0005.1 protein NbS00000251g0006.1 protein NbS00000251g0008.1 protein NbS00042093g0002.1 protein NbS00008185g0109.1 protein NbC25517216g0001.1 protein ; (*GB) gi|225433914|ref|XP_002267960.1| (e_value=1e-19) PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera];; (*TAIR) AT3G59470.2 (e_value=3e-20) | Symbols: | Far-red impaired responsive (FAR1) family protein | chr3:21979099-21980097 REVERSE LENGTH=251;; (*ITAG) Solyc06g073200.2.1 (e_value=2e-29) genomic_reference:SL2.40ch06 gene_region:41496753-41499357 transcript_region:SL2.40ch06:41496753..41499357+ functional_description:"Far-red impaired responsive family protein (AHRD V1 **-- D7LWD6_ARALY); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00033349g0009.1 protein NbS00043411g0003.1 protein NbS00055001g0001.1 protein ; (*GB) gi|224055667|ref|XP_002298593.1| (e_value=5e-25) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LMA1|FMO1_ARATH (e_value=1e-17) Probable flavin-containing monooxygenase 1 OS=Arabidopsis thaliana GN=FMO1 PE=2 SV=1;; (*TAIR) AT1G19250.1 (e_value=1e-18) | Symbols: FMO1 | flavin-dependent monooxygenase 1 | chr1:6650656-6653053 REVERSE LENGTH=530;; (*ITAG) Solyc07g042430.1.1 (e_value=3e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:52901895-52904375 transcript_region:SL2.40ch07:52901895..52904375+ go_terms:GO:0004497 functional_description:"Dimethylaniline monooxygenase (AHRD V1 **** C1GPZ2_PARBA); contains Interpro domain(s) IPR012143 Dimethylaniline monooxygenase, N-oxide-forming "; GO:0004497 NbS00018808g0002.1 protein NbS00014205g0120.1 protein NbS00014205g0110.1 protein NbS00053101g0003.1 protein NbS00001600g0006.1 protein NbS00024741g0011.1 protein NbS00024741g0008.1 protein NbS00042075g0001.1 protein ; (*GB) gi|297798730|ref|XP_002867249.1| (e_value=1e-15) hypothetical protein ARALYDRAFT_491505 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G32272.1 (e_value=2e-18) | Symbols: | Nucleotide/sugar transporter family protein | chr4:15577195-15579689 REVERSE LENGTH=344;; (*ITAG) Solyc07g007990.2.1 (e_value=4e-27) genomic_reference:SL2.40ch07 gene_region:2685699-2689886 transcript_region:SL2.40ch07:2685699..2689886- go_terms:GO:0005463 functional_description:"UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (AHRD V1 **** C1BM09_OSMMO); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0005463 NbS00007839g0011.1 protein NbS00007839g0116.1 protein NbS00007839g0121.1 protein NbS00007839g0122.1 protein NbS00018481g0003.1 protein NbS00061449g0005.1 protein NbS00056894g0013.1 protein NbS00056894g0015.1 protein ; (*GB) gi|217071576|gb|ACJ84148.1| (e_value=1e-16) unknown [Medicago truncatula];; (*SWP) sp|Q39433|RB1BV_BETVU (e_value=1e-17) Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1;; (*TAIR) AT5G59840.1 (e_value=9e-19) | Symbols: | Ras-related small GTP-binding family protein | chr5:24107450-24109049 REVERSE LENGTH=216;; (*ITAG) Solyc11g073050.1.1 (e_value=8e-19) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:53248484-53252238 transcript_region:SL2.40ch11:53248484..53252238+ go_terms:GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 functional_description:"Ras-related protein Rab-8A (AHRD V1 ***- C1C362_9MAXI); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0015031,GO:0007264,GO:0005525,GO:0007165,GO:0005622 NbS00001338g0019.1 protein NbS00001338g0025.1 protein NbS00001338g0026.1 protein NbS00001338g0031.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=9e-37) conserved hypothetical protein [Ricinus communis]; NbS00001338g0033.1 protein NbS00011089g0001.1 protein ; (*SWP) sp|O24145|4CL1_TOBAC (e_value=7e-15) 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1;; (*ITAG) Solyc03g117870.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:60933969-60937576 transcript_region:SL2.40ch03:60933969..60937576- go_terms:GO:0016207 functional_description:"4-coumarate CoA ligase (AHRD V1 **** Q0GZS1_9BORA); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016207 NbS00025221g0003.1 protein ; (*GB) gi|2245005|emb|CAB10425.1| (e_value=1e-17) hypothetical protein [Arabidopsis thaliana]; NbS00006238g0002.1 protein NbS00006238g0003.1 protein NbS00033226g0004.1 protein NbS00001957g0004.1 protein NbS00002938g0009.1 protein NbS00054645g0001.1 protein NbS00048388g0006.1 protein NbS00008166g0007.1 protein NbS00008166g0009.1 protein NbS00034450g0014.1 protein NbS00034450g0009.1 protein ; (*GB) gi|1841468|emb|CAA71881.1| (e_value=1e-30) Tyrosyl-tRNA synthetase [Nicotiana tabacum];; (*TAIR) AT2G33840.1 (e_value=5e-27) | Symbols: | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial | chr2:14315011-14317329 FORWARD LENGTH=385;; (*ITAG) Solyc01g109360.2.1 (e_value=1e-32) genomic_reference:SL2.40ch01 gene_region:88097789-88103284 transcript_region:SL2.40ch01:88097789..88103284+ go_terms:GO:0004831,GO:0005153 functional_description:"Tyrosyl-tRNA synthetase (AHRD V1 **** P93363_TOBAC); contains Interpro domain(s) IPR016485 Tyrosine tRNA ligase, archaeal/eukaryotic "; GO:0004831,GO:0005153 NbS00000569g0007.1 protein NbS00000569g0009.1 protein ; (*GB) gi|350539233|ref|NP_001233870.1| (e_value=5e-29) deoxyuridine 5'-triphosphate nucleotidohydrolase [Solanum lycopersicum];; (*SWP) sp|P32518|DUT_SOLLC (e_value=1e-30) Deoxyuridine 5'-triphosphate nucleotidohydrolase OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT3G46940.1 (e_value=1e-28) | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr3:17288367-17288867 REVERSE LENGTH=166;; (*ITAG) Solyc01g097970.2.1 (e_value=1e-34) genomic_reference:SL2.40ch01 gene_region:80384178-80385328 transcript_region:SL2.40ch01:80384178..80385328+ go_terms:GO:0046080 functional_description:"Deoxyuridine 5&apos-triphosphate nucleotidohydrolase (AHRD V1 ***- C1E7B9_9CHLO); contains Interpro domain(s) IPR008181 DeoxyUTP pyrophosphatase subfamily 1 "; GO:0046080 NbS00004793g0012.1 protein NbS00004793g0015.1 protein NbS00027503g0005.1 protein NbS00004900g0006.1 protein ; (*GB) gi|365222924|gb|AEW69814.1| (e_value=2e-61) Hop-interacting protein THI115 [Solanum lycopersicum];; (*TAIR) AT5G13020.1 (e_value=1e-40) | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein | chr5:4129691-4132089 REVERSE LENGTH=397;; (*ITAG) Solyc01g073960.2.1 (e_value=2e-66) genomic_reference:SL2.40ch01 gene_region:70554643-70560979 transcript_region:SL2.40ch01:70554643..70560979- functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00027008g0003.1 protein NbS00007627g0001.1 protein NbS00017090g0005.1 protein NbS00012514g0005.1 protein NbS00010881g0007.1 protein ; (*ITAG) Solyc12g042510.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:43293148-43297685 transcript_region:SL2.40ch12:43293148..43297685- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00010881g0008.1 protein NbS00047531g0003.1 protein NbS00035354g0003.1 protein NbS00003896g0108.1 protein NbS00003896g0211.1 protein NbC23974981g0001.1 protein ; (*GB) gi|224059572|ref|XP_002299913.1| (e_value=3e-37) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C6I8|NOG1_ARATH (e_value=7e-35) Nucleolar GTP-binding protein 1 OS=Arabidopsis thaliana GN=At1g50920 PE=2 SV=1;; (*TAIR) AT1G50920.1 (e_value=5e-36) | Symbols: | Nucleolar GTP-binding protein | chr1:18870555-18872570 FORWARD LENGTH=671;; (*ITAG) Solyc07g053730.2.1 (e_value=5e-41) genomic_reference:SL2.40ch07 gene_region:59475787-59478249 transcript_region:SL2.40ch07:59475787..59478249- go_terms:GO:0005525,GO:0003924 functional_description:"Nucleolar GTP-binding protein (AHRD V1 **** A8I0Z4_CHLRE); contains Interpro domain(s) IPR012973 NOG, C-terminal "; GO:0005525,GO:0003924 NbS00023616g0013.1 protein NbS00023616g0009.1 protein NbS00023616g0010.1 protein NbS00028220g0107.1 protein NbS00028316g0011.1 protein NbS00028316g0019.1 protein NbS00028316g0010.1 protein NbS00011970g0009.1 protein ; (*GB) gi|224111436|ref|XP_002332930.1| (e_value=2e-21) predicted protein [Populus trichocarpa]; NbS00011970g0010.1 protein NbS00037436g0004.1 protein NbS00020012g0003.1 protein NbS00051209g0002.1 protein NbS00031549g0002.1 protein NbS00013960g0007.1 protein NbS00013599g0012.1 protein NbS00001952g0003.1 protein NbS00006143g0006.1 protein NbS00026462g0002.1 protein NbS00004098g0002.1 protein NbS00001889g0002.1 protein NbS00001889g0113.1 protein NbS00001889g0108.1 protein NbS00021616g0002.1 protein NbS00020869g0008.1 protein NbS00010201g0010.1 protein NbS00005330g0005.1 protein NbS00005330g0006.1 protein NbS00057475g0003.1 protein NbS00057475g0004.1 protein NbS00031880g0002.1 protein NbS00004552g0001.1 protein ; (*ITAG) Solyc03g111710.2.1 (e_value=1e-19) genomic_reference:SL2.40ch03 gene_region:56425055-56427682 transcript_region:SL2.40ch03:56425055..56427682+ go_terms:GO:0030528,GO:0005515 functional_description:"Speckle-type POZ protein (AHRD V1 *--- SPOP_XENTR); contains Interpro domain(s) IPR000197 Zinc finger, TAZ-type "; GO:0030528,GO:0005515 NbS00025355g0001.1 protein ; (*GB) gi|356556906|ref|XP_003546761.1| (e_value=1e-27) PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like [Glycine max];; (*TAIR) AT1G17110.2 (e_value=8e-12) | Symbols: UBP15 | ubiquitin-specific protease 15 | chr1:5845816-5849889 REVERSE LENGTH=928;; (*ITAG) Solyc07g061780.2.1 (e_value=1e-79) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00019296g0003.1 protein NbS00005466g0103.1 protein NbS00005466g0107.1 protein NbS00005466g0206.1 protein NbS00006443g0004.1 protein ; (*GB) gi|359474491|ref|XP_002279304.2| (e_value=1e-47) PREDICTED: regulator of nonsense transcripts 1 homolog [Vitis vinifera];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=8e-45) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=6e-46) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g077420.2.1 (e_value=3e-50) genomic_reference:SL2.40ch08 gene_region:58442784-58455874 transcript_region:SL2.40ch08:58442784..58455874+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00005084g0010.1 protein NbS00017089g0005.1 protein NbS00000465g0002.1 protein ; (*GB) gi|75326538|sp|Q75VR0.1|TPC1B_TOBAC (e_value=2e-55) RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B;; (*SWP) sp|Q75VR0|TPC1B_TOBAC (e_value=7e-57) Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1;; (*TAIR) AT4G03560.1 (e_value=4e-30) | Symbols: ATTPC1, TPC1, ATCCH1, FOU2 | two-pore channel 1 | chr4:1580253-1585691 FORWARD LENGTH=733;; (*ITAG) Solyc07g053970.2.1 (e_value=2e-52) genomic_reference:SL2.40ch07 gene_region:59685657-59706526 transcript_region:SL2.40ch07:59685657..59706526- go_terms:GO:0005245 functional_description:"Two-pore calcium channel 2 (AHRD V1 **** B8PXJ9_STRPU); contains Interpro domain(s) IPR005821 Ion transport "; GO:0005245 NbS00046820g0003.1 protein NbS00010912g0003.1 protein NbS00032699g0004.1 protein NbS00032699g0006.1 protein NbS00009699g0002.1 protein ; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=4e-29) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*SWP) sp|F4I096|MED13_ARATH (e_value=6e-15) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.1 (e_value=4e-16) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20646875 FORWARD LENGTH=1921;; (*ITAG) Solyc04g039950.2.1 (e_value=8e-47) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "; GO:0016592 NbS00038253g0013.1 protein NbS00038253g0009.1 protein ; (*GB) gi|113205384|gb|ABI34371.1| (e_value=5e-19) Gag/pol polyprotein, 3'-partial, putative [Solanum demissum]; NbS00038253g0010.1 protein NbS00010367g0006.1 protein NbS00005032g0103.1 protein NbS00005032g0104.1 protein NbS00005032g0106.1 protein NbS00047123g0005.1 protein ; (*GB) gi|356549749|ref|XP_003543253.1| (e_value=8e-22) PREDICTED: CBS domain-containing protein CBSX5-like [Glycine max];; (*ITAG) Solyc02g078480.2.1 (e_value=6e-33) genomic_reference:SL2.40ch02 gene_region:37721777-37724047 transcript_region:SL2.40ch02:37721777..37724047- functional_description:"CBS domain containing protein (AHRD V1 ***- B6SWR6_MAIZE); contains Interpro domain(s) IPR000644 Cystathionine beta-synthase, core "; NbS00022155g0011.1 protein NbS00036794g0004.1 protein NbS00019973g0005.1 protein NbS00010605g0102.1 protein NbS00010605g0202.1 protein NbS00010605g0206.1 protein NbS00010605g0207.1 protein NbS00006349g0003.1 protein NbS00006349g0004.1 protein NbS00009006g0105.1 protein NbS00061847g0002.1 protein ; (*GB) gi|255573605|ref|XP_002527725.1| (e_value=2e-77) hypothetical protein RCOM_1247290 [Ricinus communis];; (*TAIR) AT3G09430.1 (e_value=7e-71) | Symbols: | unknown protein; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:2901280-2902893 FORWARD LENGTH=301;; (*ITAG) Solyc09g010710.2.1 (e_value=2e-87) genomic_reference:SL2.40ch09 gene_region:4026081-4029219 transcript_region:SL2.40ch09:4026081..4029219- functional_description:"Unknown Protein (AHRD V1)"; NbS00019490g0005.1 protein NbS00014433g0014.1 protein NbS00014433g0017.1 protein NbS00014433g0020.1 protein NbS00014433g0021.1 protein NbS00014433g0009.1 protein NbS00014433g0010.1 protein NbS00010522g0002.1 protein NbS00014143g0012.1 protein NbS00042013g0002.1 protein NbS00021886g0003.1 protein NbS00000373g0004.1 protein NbS00012348g0002.1 protein NbC25341501g0001.1 protein ; (*GB) gi|356573227|ref|XP_003554764.1| (e_value=6e-27) PREDICTED: uncharacterized protein LOC100792152 [Glycine max];; (*TAIR) AT3G61750.1 (e_value=3e-23) | Symbols: | Cytochrome b561/ferric reductase transmembrane with DOMON related domain | chr3:22857897-22859254 REVERSE LENGTH=398;; (*ITAG) Solyc10g009480.2.1 (e_value=4e-48) genomic_reference:SL2.40ch10 gene_region:3583862-3585967 transcript_region:SL2.40ch10:3583862..3585967+ functional_description:"Dopamine beta-monooxygenase (AHRD V1 **-- B6TH76_MAIZE); contains Interpro domain(s) IPR006593 Cytochrome b561/ferric reductase transmembrane "; NbS00033920g0003.1 protein ; (*GB) gi|151301852|gb|ABR92334.1| (e_value=2e-39) putative dienelactone hydrolase family protein [Salvia miltiorrhiza];; (*SWP) sp|Q9ZT66|E134_MAIZE (e_value=7e-16) Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1;; (*TAIR) AT3G23570.1 (e_value=1e-35) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr3:8458052-8459608 REVERSE LENGTH=239;; (*ITAG) Solyc01g080230.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:71951482-71953722 transcript_region:SL2.40ch01:71951482..71953722+ go_terms:GO:0016787 functional_description:"Dienelactone hydrolase family protein (AHRD V1 **-- D7L3C7_ARALY); contains Interpro domain(s) IPR002925 Dienelactone hydrolase "; GO:0016787 NbS00054480g0001.1 protein NbS00038172g0001.1 protein NbC24003935g0001.1 protein ; (*GB) gi|224064336|ref|XP_002301425.1| (e_value=1e-41) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g096200.2.1 (e_value=2e-48) genomic_reference:SL2.40ch01 gene_region:79051800-79061053 transcript_region:SL2.40ch01:79051800..79061053- go_terms:GO:0005488,GO:0000151 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7M1E8_ARALY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0000151 NbS00047790g0006.1 protein NbS00047790g0008.1 protein NbS00019172g0005.1 protein ; (*GB) gi|296089920|emb|CBI39739.3| (e_value=4e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g005960.1.1 (e_value=7e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:742631-743878 transcript_region:SL2.40ch10:742631..743878- functional_description:"Fasciclin-like arabinogalactan protein 10 (AHRD V1 ***- A9XTL5_GOSHI); contains Interpro domain(s) IPR000782 FAS1 domain "; NbS00036991g0001.1 protein NbS00006072g0002.1 protein NbS00010439g0001.1 protein NbS00019342g0007.1 protein NbS00057687g0003.1 protein ; (*GB) gi|388514317|gb|AFK45220.1| (e_value=8e-24) unknown [Medicago truncatula];; (*SWP) sp|Q9SA77|ARAE1_ARATH (e_value=2e-23) UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1;; (*TAIR) AT1G30620.3 (e_value=1e-24) | Symbols: HSR8, MUR4, UXE1 | NAD(P)-binding Rossmann-fold superfamily protein | chr1:10855496-10857970 FORWARD LENGTH=418;; (*ITAG) Solyc07g043550.2.1 (e_value=1e-29) genomic_reference:SL2.40ch07 gene_region:54777932-54780376 transcript_region:SL2.40ch07:54777932..54780376+ go_terms:GO:0050373,GO:0042803 functional_description:"UDP-glucose 4-epimerase (AHRD V1 **** A6LK35_THEM4); contains Interpro domain(s) IPR005886 UDP-glucose 4-epimerase "; GO:0050373,GO:0042803 NbS00015124g0001.1 protein NbS00046033g0003.1 protein NbS00046872g0005.1 protein NbS00001280g0014.1 protein NbS00023734g0003.1 protein NbS00023734g0006.1 protein NbS00023734g0007.1 protein NbS00023734g0008.1 protein NbS00055250g0004.1 protein NbS00019697g0004.1 protein ; (*ITAG) Solyc07g065770.2.1 (e_value=1e-15) genomic_reference:SL2.40ch07 gene_region:64633715-64634649 transcript_region:SL2.40ch07:64633715..64634649+ go_terms:GO:0016887 functional_description:"ABC transporter G family member 26 (AHRD V1 ***- AB26G_ARATH); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0016887 NbS00021815g0002.1 protein NbS00021815g0005.1 protein NbS00000327g0004.1 protein NbS00000327g0005.1 protein NbS00004868g0004.1 protein ; (*ITAG) Solyc07g056210.2.1 (e_value=2e-32) genomic_reference:SL2.40ch07 gene_region:61378852-61379980 transcript_region:SL2.40ch07:61378852..61379980- functional_description:"Unknown Protein (AHRD V1)"; NbS00004868g0007.1 protein ; (*ITAG) Solyc07g056180.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:61360115-61361360 transcript_region:SL2.40ch07:61360115..61361360- functional_description:"NBS-LRR class disease resistance protein (AHRD V1 ---- D5L9G3_ORYSJ)"; NbS00022062g0003.1 protein ; (*ITAG) Solyc11g005740.1.1 (e_value=1e-57) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:585204-589027 transcript_region:SL2.40ch11:585204..589027- go_terms:GO:0008270 functional_description:"PHD-finger family protein expressed (AHRD V1 *-*- Q53MN0_ORYSJ); contains Interpro domain(s) IPR011011 Zinc finger, FYVE/PHD-type "; GO:0008270 NbS00046208g0002.1 protein NbS00014538g0006.1 protein NbS00053316g0002.1 protein NbS00041450g0002.1 protein NbS00006369g0012.1 protein ; (*GB) gi|296090216|emb|CBI40035.3| (e_value=5e-25) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G24740.1 (e_value=4e-22) | Symbols: | Protein of unknown function (DUF1162) | chr5:8470073-8489703 REVERSE LENGTH=3464;; (*ITAG) Solyc11g045170.1.1 (e_value=3e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36878299-36887767 transcript_region:SL2.40ch11:36878299..36887767+ functional_description:"Vacuolar protein sorting-associated protein 13 family protein (AHRD V1 ***- D3BE65_POLPA)"; NbS00006369g0006.1 protein NbS00006369g0007.1 protein NbS00032727g0004.1 protein ; (*GB) gi|297741837|emb|CBI33150.3| (e_value=2e-31) unnamed protein product [Vitis vinifera];; (*SWP) sp|P0CE10|Y4102_ARATH (e_value=5e-26) Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1;; (*TAIR) AT5G10370.1 (e_value=2e-27) | Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775;; (*ITAG) Solyc11g010310.1.1 (e_value=2e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3393422-3400263 transcript_region:SL2.40ch11:3393422..3400263+ go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 functional_description:"ATP dependent RNA helicase (AHRD V1 *-*- B8BR58_THAPS); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0008270,GO:0003723,GO:0005622 NbS00021013g0002.1 protein NbS00021013g0003.1 protein NbS00020213g0003.1 protein NbS00020213g0005.1 protein NbS00020213g0006.1 protein NbS00001542g0003.1 protein NbS00001542g0007.1 protein ; (*ITAG) Solyc05g026540.2.1 (e_value=3e-20) genomic_reference:SL2.40ch05 gene_region:41738472-41744946 transcript_region:SL2.40ch05:41738472..41744946+ functional_description:"Transmembrane protein 214 (AHRD V1 *-*- TM214_BOVIN)"; NbS00014264g0009.1 protein ; (*GB) gi|224095051|ref|XP_002310338.1| (e_value=2e-16) white-brown-complex ABC transporter family [Populus trichocarpa];; (*ITAG) Solyc09g098410.1.1 (e_value=1e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:67501233-67504013 transcript_region:SL2.40ch09:67501233..67504013+ go_terms:GO:0008559 functional_description:"ABC transporter G family member 19 (AHRD V1 *-*- AB19G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0008559 NbS00001293g0005.1 protein ; (*GB) gi|225435967|ref|XP_002270467.1| (e_value=2e-16) PREDICTED: uncharacterized protein LOC100244484 [Vitis vinifera];; (*ITAG) Solyc12g099940.1.1 (e_value=2e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65228592-65234661 transcript_region:SL2.40ch12:65228592..65234661+ go_terms:GO:0008152 functional_description:"Gcn5-related n-acetyltransferase family protein (AHRD V1 *-*- C1FD65_9CHLO); contains Interpro domain(s) IPR000182 GCN5-related N-acetyltransferase "; GO:0008152 NbS00049200g0003.1 protein NbS00026430g0003.1 protein ; (*ITAG) Solyc01g079290.1.1 (e_value=3e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:70883001-70883855 transcript_region:SL2.40ch01:70883001..70883855- go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 (AHRD V1 *-*- Q2HSK9_MEDTR); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00018940g0018.1 protein NbS00002733g0016.1 protein NbS00015136g0006.1 protein ; (*ITAG) Solyc03g112960.1.1 (e_value=3e-13) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch03 gene_region:57342811-57343638 transcript_region:SL2.40ch03:57342811..57343638+ functional_description:"Pectinesterase (AHRD V1 ***- B9GXZ7_POPTR)"; NbS00015136g0007.1 protein NbS00015136g0008.1 protein NbS00031642g0103.1 protein NbS00031642g0105.1 protein NbS00034636g0003.1 protein NbS00034636g0004.1 protein NbS00003672g0002.1 protein NbS00003672g0004.1 protein NbS00025819g0006.1 protein NbS00011234g0105.1 protein NbS00011234g0108.1 protein NbS00057800g0001.1 protein ; (*ITAG) Solyc12g006130.1.1 (e_value=3e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:690070-691290 transcript_region:SL2.40ch12:690070..691290+ functional_description:"F-box family protein (AHRD V1 ***- B9GTQ9_POPTR); contains Interpro domain(s) IPR006527 F-box associated "; NbS00013317g0011.1 protein NbS00018592g0005.1 protein NbS00043655g0003.1 protein ; (*ITAG) Solyc04g009360.2.1 (e_value=1e-25) genomic_reference:SL2.40ch04 gene_region:2793909-2799625 transcript_region:SL2.40ch04:2793909..2799625- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MUA3_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00039008g0006.1 protein NbS00012999g0019.1 protein NbS00012999g0020.1 protein NbS00012999g0010.1 protein NbS00058326g0002.1 protein NbS00058326g0003.1 protein NbS00004698g0008.1 protein NbS00010200g0012.1 protein NbS00010200g0015.1 protein NbS00010200g0007.1 protein NbS00010200g0008.1 protein NbS00024721g0005.1 protein NbS00031652g0002.1 protein NbS00031652g0003.1 protein NbS00040009g0001.1 protein ; (*ITAG) Solyc10g084090.1.1 (e_value=1e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:63078128-63084428 transcript_region:SL2.40ch10:63078128..63084428+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 *-*- D7LF08_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00009217g0011.1 protein NbS00009217g0004.1 protein NbS00006023g0004.1 protein NbS00006023g0005.1 protein NbS00006023g0006.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=9e-27) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=8e-11) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00037616g0007.1 protein NbS00037616g0008.1 protein NbS00016005g0006.1 protein NbS00009698g0003.1 protein NbS00020628g0003.1 protein ; (*ITAG) Solyc02g089300.2.1 (e_value=4e-15) genomic_reference:SL2.40ch02 gene_region:45741259-45743232 transcript_region:SL2.40ch02:45741259..45743232- functional_description:"Unknown Protein (AHRD V1)"; NbS00019876g0005.1 protein NbS00015957g0006.1 protein NbS00021588g0001.1 protein NbS00026469g0001.1 protein NbS00035079g0002.1 protein NbS00038246g0004.1 protein NbS00038246g0007.1 protein NbS00002574g0004.1 protein ; (*GB) gi|22329099|ref|NP_194986.2| (e_value=3e-24) C3H4 type zinc finger protein [Arabidopsis thaliana];; (*SWP) sp|Q9LN71|RING1_ARATH (e_value=3e-18) E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1;; (*TAIR) AT4G32600.1 (e_value=7e-27) | Symbols: | RING/U-box superfamily protein | chr4:15724010-15725737 FORWARD LENGTH=453;; (*ITAG) Solyc12g006940.1.1 (e_value=3e-30) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:1371355-1374865 transcript_region:SL2.40ch12:1371355..1374865+ go_terms:GO:0008270 functional_description:"RING finger family protein (AHRD V1 ***- D6RU92_SILLA); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbS00028970g0013.1 protein NbS00028970g0017.1 protein NbS00028970g0009.1 protein NbS00028784g0002.1 protein ; (*GB) gi|359475915|ref|XP_002277778.2| (e_value=2e-31) PREDICTED: histidine-containing phosphotransfer protein 4-like [Vitis vinifera];; (*SWP) sp|Q9LU15|AHP4_ARATH (e_value=1e-24) Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2;; (*TAIR) AT3G16360.2 (e_value=3e-32) | Symbols: AHP4 | HPT phosphotransmitter 4 | chr3:5554351-5555518 FORWARD LENGTH=145;; (*ITAG) Solyc11g070150.1.1 (e_value=5e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:51751629-51754234 transcript_region:SL2.40ch11:51751629..51754234- go_terms:GO:0000160 functional_description:"Histidine phosphotransfer protein (AHRD V1 ***- B9GGM6_POPTR); contains Interpro domain(s) IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) region "; GO:0000160 NbS00028784g0004.1 protein NbS00000937g0004.1 protein NbS00000937g0005.1 protein NbS00006231g0001.1 protein NbS00032107g0004.1 protein NbS00032107g0007.1 protein NbS00016668g0008.1 protein NbS00001610g0002.1 protein NbS00025921g0008.1 protein NbS00026721g0001.1 protein NbS00001014g0001.1 protein ; (*TAIR) AT5G51230.3 (e_value=1e-14) | Symbols: EMF2, VEF2, CYR1, AtEMF2 | VEFS-Box of polycomb protein | chr5:20824153-20829344 FORWARD LENGTH=626;; (*ITAG) Solyc03g093640.2.1 (e_value=4e-15) genomic_reference:SL2.40ch03 gene_region:48624958-48655114 transcript_region:SL2.40ch03:48624958..48655114- go_terms:GO:0005515,GO:0003700 functional_description:"Polycomb group protein EMBRYONIC FLOWER 2 (AHRD V1 **-- EMF2_ARATH); contains Interpro domain(s) IPR007087 Zinc finger, C2H2-type "; GO:0005515,GO:0003700 NbC25691989g0001.1 protein ; (*ITAG) Solyc01g005400.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:280019-283591 transcript_region:SL2.40ch01:280019..283591+ go_terms:GO:0005509 functional_description:"Calcium binding protein Caleosin (AHRD V1 **-* A8N0P5_COPC7); contains Interpro domain(s) IPR007736 Caleosin related "; GO:0005509 NbC24464241g0001.1 protein ; (*GB) gi|359497758|ref|XP_003635631.1| (e_value=4e-62) PREDICTED: DEAD-box ATP-dependent RNA helicase 38-like, partial [Vitis vinifera];; (*SWP) sp|Q93ZG7|RH38_ARATH (e_value=6e-41) DEAD-box ATP-dependent RNA helicase 38 OS=Arabidopsis thaliana GN=RH38 PE=2 SV=2;; (*TAIR) AT3G53110.1 (e_value=5e-42) | Symbols: LOS4 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:19687968-19690423 FORWARD LENGTH=496;; (*ITAG) Solyc04g082790.2.1 (e_value=6e-69) genomic_reference:SL2.40ch04 gene_region:63927360-63932321 transcript_region:SL2.40ch04:63927360..63932321- go_terms:GO:0008026,GO:0005524 functional_description:"Atp-dependent RNA helicase (AHRD V1 ***- B8BXP3_THAPS); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00002149g0002.1 protein NbC26259638g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00009547g0003.1 protein NbS00009547g0005.1 protein NbS00005507g0003.1 protein ; (*ITAG) Solyc01g106150.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:85858825-85859985 transcript_region:SL2.40ch01:85858825..85859985- go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00012363g0002.1 protein NbS00012363g0005.1 protein ; (*GB) gi|351721257|ref|NP_001238227.1| (e_value=2e-20) uncharacterized protein LOC100305630 [Glycine max];; (*TAIR) AT5G56940.1 (e_value=3e-21) | Symbols: | Ribosomal protein S16 family protein | chr5:23030879-23032200 FORWARD LENGTH=135;; (*ITAG) Solyc07g008660.2.1 (e_value=2e-22) genomic_reference:SL2.40ch07 gene_region:3593472-3596877 transcript_region:SL2.40ch07:3593472..3596877- go_terms:GO:0003735,GO:0005515 functional_description:"30S ribosomal protein S16 (AHRD V1 ***- B3IWG3_SOLLC); contains Interpro domain(s) IPR000307 Ribosomal protein S16 "; GO:0003735,GO:0005515 NbS00037570g0004.1 protein NbS00046996g0006.1 protein ; (*GB) gi|255550560|ref|XP_002516330.1| (e_value=3e-16) expressed protein, putative [Ricinus communis];; (*TAIR) AT2G31305.1 (e_value=9e-18) | Symbols: INH3 | inhibitor-3 | chr2:13350909-13351232 FORWARD LENGTH=107; NbS00046996g0009.1 protein NbS00023298g0012.1 protein NbS00023298g0006.1 protein NbS00023298g0009.1 protein ; (*ITAG) Solyc01g059760.1.1 (e_value=2e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00031874g0003.1 protein NbS00053469g0004.1 protein NbS00002835g0004.1 protein NbS00004379g0008.1 protein NbS00040444g0002.1 protein NbS00001519g0003.1 protein NbS00018849g0013.1 protein ; (*ITAG) Solyc10g076170.1.1 (e_value=2e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58305883-58306419 transcript_region:SL2.40ch10:58305883..58306419+ functional_description:"Unknown Protein (AHRD V1)"; NbS00018849g0018.1 protein NbS00018849g0027.1 protein ; (*GB) gi|112253845|ref|YP_717101.1| (e_value=5e-39) hypothetical protein BrnapMp002 [Brassica napus]; NbS00018849g0030.1 protein NbS00018849g0035.1 protein NbS00041877g0003.1 protein NbS00024172g0015.1 protein NbS00010579g0007.1 protein NbS00010579g0009.1 protein NbS00034371g0003.1 protein NbS00001635g0009.1 protein NbS00009421g0011.1 protein ; (*GB) gi|255570013|ref|XP_002525969.1| (e_value=9e-12) DNA double-strand break repair rad50 ATPase, putative [Ricinus communis];; (*TAIR) AT1G67230.1 (e_value=5e-11) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132;; (*ITAG) Solyc02g089800.2.1 (e_value=8e-24) genomic_reference:SL2.40ch02 gene_region:46075529-46082342 transcript_region:SL2.40ch02:46075529..46082342- functional_description:"Nuclear matrix constituent protein 1-like (AHRD V1 ***- A6BME3_PETCR)"; NbS00051996g0001.1 protein ; (*GB) gi|7546705|emb|CAB87283.1| (e_value=2e-30) putative protein [Arabidopsis thaliana];; (*SWP) sp|Q4FE45|XB33_ARATH (e_value=6e-32) E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1;; (*TAIR) AT5G07270.1 (e_value=4e-33) | Symbols: XBAT33 | XB3 ortholog 3 in Arabidopsis thaliana | chr5:2280821-2283384 FORWARD LENGTH=513;; (*ITAG) Solyc03g026060.2.1 (e_value=5e-33) genomic_reference:SL2.40ch03 gene_region:7839094-7845515 transcript_region:SL2.40ch03:7839094..7845515- go_terms:GO:0008381 functional_description:"Ankyrin repeat-rich protein (AHRD V1 **-- C7EC57_NICBE); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008381 NbS00025906g0005.1 protein NbS00012408g0011.1 protein NbS00012408g0012.1 protein NbS00012408g0016.1 protein ; (*GB) gi|356499998|ref|XP_003518822.1| (e_value=5e-57) PREDICTED: putative phospholipid-transporting ATPase 9-like [Glycine max];; (*SWP) sp|Q9LI83|ALA10_ARATH (e_value=1e-51) Phospholipid-transporting ATPase 10 OS=Arabidopsis thaliana GN=ALA10 PE=1 SV=1;; (*TAIR) AT3G25610.1 (e_value=1e-52) | Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr3:9308942-9313353 REVERSE LENGTH=1202;; (*ITAG) Solyc05g010120.2.1 (e_value=1e-72) genomic_reference:SL2.40ch05 gene_region:4302127-4308688 transcript_region:SL2.40ch05:4302127..4308688+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** C1HB29_PARBA); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00012408g0009.1 protein ; (*GB) gi|255548724|ref|XP_002515418.1| (e_value=4e-50) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SZ52|PP344_ARATH (e_value=2e-48) Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1;; (*TAIR) AT4G31850.1 (e_value=2e-49) | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112;; (*ITAG) Solyc04g015440.2.1 (e_value=4e-39) genomic_reference:SL2.40ch04 gene_region:5628290-5631920 transcript_region:SL2.40ch04:5628290..5631920+ go_terms:GO:0003723 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L610_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723 NbS00012408g0010.1 protein NbS00030636g0002.1 protein NbS00005182g0013.1 protein NbS00005182g0006.1 protein NbS00005182g0007.1 protein NbS00005182g0009.1 protein NbS00011622g0005.1 protein NbS00002584g0207.1 protein NbS00031729g0007.1 protein NbS00018461g0002.1 protein NbS00026224g0005.1 protein NbS00026224g0007.1 protein NbS00026224g0009.1 protein NbS00017503g0005.1 protein NbS00009641g0003.1 protein NbC24489973g0001.1 protein ; (*GB) gi|321496068|gb|ADW93911.1| (e_value=2e-26) chloride channel 1 [Hordeum vulgare subsp. vulgare];; (*SWP) sp|Q96282|CLCC_ARATH (e_value=2e-24) Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1;; (*TAIR) AT5G49890.1 (e_value=1e-25) | Symbols: CLC-C, ATCLC-C | chloride channel C | chr5:20288489-20292143 REVERSE LENGTH=779;; (*ITAG) Solyc10g044470.1.1 (e_value=4e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:21959526-21966277 transcript_region:SL2.40ch10:21959526..21966277+ go_terms:GO:0005247 functional_description:"Voltage-gated chloride channel (AHRD V1 **** Q96325_ARATH); contains Interpro domain(s) IPR002251 Chloride channel plant CLC "; GO:0005247 NbS00012533g0104.1 protein NbS00012533g0106.1 protein NbS00012533g0107.1 protein NbS00025776g0002.1 protein ; (*ITAG) Solyc01g109540.2.1 (e_value=4e-18) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbS00005478g0004.1 protein NbS00005478g0007.1 protein NbS00028565g0002.1 protein NbS00007135g0004.1 protein NbS00007135g0009.1 protein NbS00037053g0001.1 protein NbS00052711g0006.1 protein NbS00002537g0006.1 protein NbS00002537g0008.1 protein ; (*GB) gi|350537665|ref|NP_001234815.1| (e_value=3e-17) mevalonate disphosphate decarboxylase [Solanum lycopersicum];; (*TAIR) AT3G54250.1 (e_value=3e-16) | Symbols: | GHMP kinase family protein | chr3:20082468-20084688 REVERSE LENGTH=419;; (*ITAG) Solyc04g009650.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:3019293-3024735 transcript_region:SL2.40ch04:3019293..3024735- go_terms:GO:0004163,GO:0042803 functional_description:"Diphosphomevalonate decarboxylase-like protein (AHRD V1 **** Q8LAR8_ARATH); contains Interpro domain(s) IPR005935 Diphosphomevalonate decarboxylase "; GO:0004163,GO:0042803 NbS00007388g0003.1 protein NbS00025466g0014.1 protein NbS00025466g0007.1 protein NbS00011182g0006.1 protein NbS00041291g0005.1 protein NbS00015140g0011.1 protein NbS00004537g0002.1 protein NbS00008387g0006.1 protein NbS00008387g0007.1 protein NbS00029735g0001.1 protein NbS00011035g0001.1 protein NbS00009369g0002.1 protein NbS00031257g0107.1 protein NbS00030233g0008.1 protein NbS00010454g0005.1 protein NbS00010454g0006.1 protein NbS00053789g0004.1 protein NbS00007781g0015.1 protein NbS00007781g0022.1 protein ; (*TAIR) AT4G02460.1 (e_value=6e-14) | Symbols: PMS1 | DNA mismatch repair protein, putative | chr4:1076306-1080510 REVERSE LENGTH=923;; (*ITAG) Solyc09g074980.2.1 (e_value=3e-17) genomic_reference:SL2.40ch09 gene_region:62274565-62281091 transcript_region:SL2.40ch09:62274565..62281091+ go_terms:GO:0005524,GO:0006298 functional_description:"MutL DNA mismatch repair protein (AHRD V1 *-*- D3BFF8_POLPA); contains Interpro domain(s) IPR015434 Post Meiotic Segregation 2 "; GO:0005524,GO:0006298 NbS00007781g0023.1 protein NbS00003616g0009.1 protein NbS00003616g0010.1 protein NbS00010820g0002.1 protein ; (*GB) gi|224126379|ref|XP_002329539.1| (e_value=7e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FJR0|RENT1_ARATH (e_value=2e-21) Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana GN=UPF1 PE=1 SV=2;; (*TAIR) AT5G47010.1 (e_value=2e-22) | Symbols: UPF1, LBA1, ATUPF1 | RNA helicase, putative | chr5:19072009-19078856 FORWARD LENGTH=1254;; (*ITAG) Solyc08g007110.2.1 (e_value=8e-46) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00020762g0005.1 protein NbS00038831g0008.1 protein NbS00038831g0009.1 protein NbS00036370g0104.1 protein NbS00020222g0013.1 protein NbS00020222g0014.1 protein NbS00004090g0008.1 protein ; (*GB) gi|147817785|emb|CAN75585.1| (e_value=8e-48) hypothetical protein VITISV_017140 [Vitis vinifera];; (*SWP) sp|Q43848|TKTC_SOLTU (e_value=3e-24) Transketolase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT3G60750.2 (e_value=7e-28) | Symbols: | Transketolase | chr3:22454004-22456824 FORWARD LENGTH=740;; (*ITAG) Solyc01g018020.1.1 (e_value=2e-73) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:26846738-26852758 transcript_region:SL2.40ch01:26846738..26852758+ go_terms:GO:0004802,GO:0008152 functional_description:"Transketolase-like protein (AHRD V1 ***- Q8LE99_ARATH); contains Interpro domain(s) IPR005478 Bacterial transketolase "; GO:0004802,GO:0008152 NbS00061526g0001.1 protein ; (*GB) gi|242082496|ref|XP_002441673.1| (e_value=3e-17) hypothetical protein SORBIDRAFT_08g000610 [Sorghum bicolor];; (*ITAG) Solyc04g050940.1.1 (e_value=3e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:48148204-48154307 transcript_region:SL2.40ch04:48148204..48154307+ go_terms:GO:0016301,GO:0048602 functional_description:"Receptor protein kinase-like (AHRD V1 *-** B6SP14_MAIZE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0016301,GO:0048602 NbS00011957g0004.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=4e-20) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=4e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00011957g0105.1 protein NbS00011957g0106.1 protein NbS00024735g0002.1 protein ; (*ITAG) Solyc07g006050.1.1 (e_value=8e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:895880-900000 transcript_region:SL2.40ch07:895880..900000+ go_terms:GO:0008270 functional_description:"Histone-lysine N-methyltransferase ASHR3 (AHRD V1 *-*- ASHR3_ARATH); contains Interpro domain(s) IPR014857 Zinc finger, RING-like "; GO:0008270 NbS00016464g0009.1 protein NbS00003903g0004.1 protein NbS00004976g0013.1 protein NbS00004976g0014.1 protein NbS00025345g0003.1 protein NbS00025345g0106.1 protein NbS00011029g0002.1 protein NbS00011324g0006.1 protein NbS00026419g0002.1 protein NbS00058825g0001.1 protein ; (*GB) gi|356497635|ref|XP_003517665.1| (e_value=1e-16) PREDICTED: abhydrolase domain-containing protein FAM108C1-like [Glycine max];; (*TAIR) AT1G32190.2 (e_value=4e-17) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr1:11593059-11595481 REVERSE LENGTH=337;; (*ITAG) Solyc08g076350.2.1 (e_value=1e-21) genomic_reference:SL2.40ch08 gene_region:57476093-57483705 transcript_region:SL2.40ch08:57476093..57483705- functional_description:"Abhydrolase domain-containing protein FAM108B1 (AHRD V1 *--- C0HAS5_SALSA)"; NbS00029442g0105.1 protein NbS00016843g0005.1 protein NbC23346764g0001.1 protein ; (*GB) gi|224140225|ref|XP_002323485.1| (e_value=5e-29) multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa];; (*SWP) sp|Q9ZR72|AB1B_ARATH (e_value=2e-28) ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1;; (*TAIR) AT2G36910.1 (e_value=2e-29) | Symbols: ATPGP1, PGP1, ABCB1 | ATP binding cassette subfamily B1 | chr2:15502162-15507050 FORWARD LENGTH=1286;; (*ITAG) Solyc09g008240.2.1 (e_value=2e-28) genomic_reference:SL2.40ch09 gene_region:1690129-1697213 transcript_region:SL2.40ch09:1690129..1697213- go_terms:GO:0010329 functional_description:"Uncharacterized ABC transporter ATP-binding protein/permease C9B6.09c (AHRD V1 *--* YNT9_SCHPO); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00034490g0005.1 protein NbS00002834g0005.1 protein ; (*ITAG) Solyc05g008920.2.1 (e_value=5e-14) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00006226g0008.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=8e-15) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00015391g0003.1 protein NbS00030478g0004.1 protein NbS00018467g0106.1 protein NbS00048451g0003.1 protein ; (*ITAG) Solyc07g041100.1.1 (e_value=6e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:49145538-49146146 transcript_region:SL2.40ch07:49145538..49146146+ functional_description:"Unknown Protein (AHRD V1)"; NbS00021168g0007.1 protein NbS00010050g0003.1 protein NbS00010050g0005.1 protein NbS00023584g0004.1 protein ; (*ITAG) Solyc02g043820.1.1 (e_value=3e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:22443207-22445781 transcript_region:SL2.40ch02:22443207..22445781+ functional_description:"Unknown Protein (AHRD V1)"; NbS00009272g0006.1 protein NbS00011440g0004.1 protein NbS00005219g0007.1 protein ; (*GB) gi|297739580|emb|CBI29762.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G22940.1 (e_value=6e-36) | Symbols: TH1, TH-1, THIE | thiamin biosynthesis protein, putative | chr1:8122384-8124908 FORWARD LENGTH=522;; (*ITAG) Solyc01g103950.2.1 (e_value=8e-55) genomic_reference:SL2.40ch01 gene_region:84184010-84191008 transcript_region:SL2.40ch01:84184010..84191008- go_terms:GO:0008152,GO:0009228 functional_description:"Thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase (AHRD V1 **-- A9NB66_COXBR); contains Interpro domain(s) IPR004399 Phosphomethylpyrimidine kinase type-2 "; GO:0008152,GO:0009228 NbS00006516g0003.1 protein NbS00058492g0001.1 protein NbS00000103g0006.1 protein NbS00003757g0006.1 protein NbS00036272g0104.1 protein NbS00000763g0003.1 protein NbS00000763g0004.1 protein NbS00017140g0001.1 protein NbS00004199g0001.1 protein NbS00014114g0008.1 protein NbS00059392g0006.1 protein NbS00059392g0008.1 protein NbS00015135g0010.1 protein NbS00052837g0004.1 protein NbS00041919g0002.1 protein NbS00011418g0006.1 protein NbS00055663g0003.1 protein NbS00020228g0008.1 protein NbS00023578g0006.1 protein NbS00043059g0004.1 protein NbS00000206g0011.1 protein NbS00000206g0013.1 protein NbS00045121g0002.1 protein NbS00059187g0001.1 protein NbS00000608g0001.1 protein ; (*ITAG) Solyc09g097830.2.1 (e_value=8e-16) genomic_reference:SL2.40ch09 gene_region:67099611-67111955 transcript_region:SL2.40ch09:67099611..67111955+ go_terms:GO:0016262 functional_description:"TPR repeat protein (AHRD V1 **-- B0JK10_MICAN); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0016262 NbS00000608g0104.1 protein NbS00000608g0106.1 protein NbS00000608g0109.1 protein NbS00001459g0004.1 protein NbS00001459g0009.1 protein ; (*ITAG) Solyc02g083130.2.1 (e_value=2e-12) genomic_reference:SL2.40ch02 gene_region:41218468-41222010 transcript_region:SL2.40ch02:41218468..41222010+ functional_description:"IST1 homolog (AHRD V1 *--- C1BSR8_9MAXI); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00031558g0002.1 protein NbS00031558g0004.1 protein NbS00029243g0007.1 protein ; (*GB) gi|224091036|ref|XP_002309153.1| (e_value=7e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08947.1 (e_value=2e-23) | Symbols: | ARM repeat superfamily protein | chr3:2724007-2726722 FORWARD LENGTH=873;; (*ITAG) Solyc09g005010.2.1 (e_value=4e-31) genomic_reference:SL2.40ch09 gene_region:8818-14638 transcript_region:SL2.40ch09:8818..14638- go_terms:GO:0008320 functional_description:"Importin subunit beta (AHRD V1 ***- B0WBR4_CULQU); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008320 NbS00033708g0002.1 protein ; (*GB) gi|359493609|ref|XP_002283037.2| (e_value=2e-35) PREDICTED: uncharacterized protein LOC100252035 [Vitis vinifera];; (*TAIR) AT1G73140.1 (e_value=6e-36) | Symbols: TBL31 | Plant protein of unknown function (DUF828) | chr1:27502133-27503743 REVERSE LENGTH=413;; (*ITAG) Solyc12g014200.1.1 (e_value=5e-45) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:5046350-5047894 transcript_region:SL2.40ch12:5046350..5047894+ functional_description:"Os03g0291800 protein (Fragment) (AHRD V1 **-- Q0DSS4_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; NbS00009839g0005.1 protein NbS00034464g0002.1 protein NbS00038775g0007.1 protein NbC23505861g0001.1 protein ; (*GB) gi|225446613|ref|XP_002280622.1| (e_value=1e-24) PREDICTED: uncharacterized protein LOC100243760 [Vitis vinifera];; (*TAIR) AT2G31040.1 (e_value=5e-20) | Symbols: | ATP synthase protein I -related | chr2:13209094-13211012 REVERSE LENGTH=350;; (*ITAG) Solyc12g010870.1.1 (e_value=1e-38) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3785577-3790200 transcript_region:SL2.40ch12:3785577..3790200+ functional_description:"ATP synthase I-like protein (AHRD V1 ***- A8HNA8_CHLRE)"; NbS00025195g0005.1 protein NbS00025195g0006.1 protein NbS00029517g0004.1 protein NbS00040437g0002.1 protein ; (*GB) gi|559237|gb|AAA98492.1| (e_value=1e-48) tyrosine-rich hydroxyproline-rich glycoprotein, partial [Petroselinum crispum];; (*ITAG) Solyc12g098780.1.1 (e_value=4e-53) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:64512934-64514924 transcript_region:SL2.40ch12:64512934..64514924- go_terms:GO:0009664 functional_description:"Pistil extensin like protein (Fragment) (AHRD V1 *-*- Q40552_TOBAC); contains Interpro domain(s) IPR006041 Pollen Ole e 1 allergen and extensin "; GO:0009664 NbS00029217g0001.1 protein NbS00015749g0006.1 protein NbS00002961g0003.1 protein ; (*GB) gi|359495929|ref|XP_002272151.2| (e_value=3e-21) PREDICTED: uncharacterized protein LOC100242314 [Vitis vinifera];; (*TAIR) AT2G43465.1 (e_value=7e-18) | Symbols: | RNA-binding ASCH domain protein | chr2:18047732-18049709 REVERSE LENGTH=388;; (*ITAG) Solyc06g073130.2.1 (e_value=2e-31) genomic_reference:SL2.40ch06 gene_region:41443546-41448709 transcript_region:SL2.40ch06:41443546..41448709- functional_description:"ProFAR isomerase associated family protein expressed (AHRD V1 ***- Q53LS7_ORYSJ); contains Interpro domain(s) IPR010759 ProFAR isomerase-like "; NbS00031302g0010.1 protein NbS00006282g0006.1 protein NbS00006282g0008.1 protein NbS00025312g0009.1 protein NbS00051110g0001.1 protein ; (*GB) gi|225446090|ref|XP_002273403.1| (e_value=2e-23) PREDICTED: CASP-like protein VIT_11s0052g01140-like [Vitis vinifera];; (*SWP) sp|A7Q6G6|CSPL9_VITVI (e_value=7e-25) CASP-like protein VIT_11s0052g01140 OS=Vitis vinifera GN=VIT_11s0052g01140 PE=2 SV=1; NbS00007429g0002.1 protein NbS00023189g0002.1 protein NbS00043485g0006.1 protein ; (*ITAG) Solyc00g244290.1.1 (e_value=2e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:19966386-19966877 transcript_region:SL2.40ch00:19966386..19966877+ functional_description:"NADH dehydrogenase subunit II (Fragment) (AHRD V1 *-*- O79467_SOLTU)"; NbS00022077g0003.1 protein NbS00054576g0001.1 protein NbS00040649g0002.1 protein ; (*GB) gi|356512602|ref|XP_003525007.1| (e_value=7e-16) PREDICTED: probable peptide/nitrate transporter At5g62680-like [Glycine max];; (*ITAG) Solyc06g071570.2.1 (e_value=3e-21) genomic_reference:SL2.40ch06 gene_region:40451690-40454562 transcript_region:SL2.40ch06:40451690..40454562+ go_terms:GO:0080054,GO:0042936 functional_description:"Solute carrier family 15 member 4 (AHRD V1 **-- S15A4_BOVIN); contains Interpro domain(s) IPR000109 TGF-beta receptor, type I/II extracellular region "; GO:0080054,GO:0042936 NbS00002209g0002.1 protein NbS00017871g0006.1 protein NbS00007256g0005.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-22) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT1G43760.1 (e_value=2e-11) | Symbols: | DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626; NbS00007256g0006.1 protein NbS00027232g0013.1 protein NbS00006034g0007.1 protein NbS00000268g0015.1 protein NbS00000268g0018.1 protein NbS00000268g0009.1 protein NbS00019312g0005.1 protein NbS00019312g0008.1 protein NbS00019312g0009.1 protein NbS00039859g0004.1 protein NbS00002497g0004.1 protein ; (*GB) gi|40781598|gb|AAR89808.1| (e_value=2e-30) reductase 2 [Hydrangea macrophylla];; (*SWP) sp|Q7G764|NADO1_ORYSJ (e_value=3e-21) Probable NAD(P)H-dependent oxidoreductase 1 OS=Oryza sativa subsp. japonica GN=Os10g0113000 PE=1 SV=1;; (*TAIR) AT1G59960.1 (e_value=7e-19) | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:22071410-22073067 REVERSE LENGTH=326;; (*ITAG) Solyc12g042470.1.1 (e_value=1e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43212589-43216070 transcript_region:SL2.40ch12:43212589..43216070+ go_terms:GO:0032866,GO:0032867 functional_description:"Reductase 2 (AHRD V1 **** Q6TY50_HYDMC); contains Interpro domain(s) IPR020471 Aldo/keto reductase subgroup "; GO:0032866,GO:0032867 NbS00002497g0111.1 protein NbS00002497g0214.1 protein NbS00002497g0210.1 protein NbS00025654g0003.1 protein NbS00025654g0004.1 protein NbS00010599g0005.1 protein NbS00016850g0006.1 protein NbS00047209g0003.1 protein NbS00011700g0006.1 protein NbS00030491g0003.1 protein ; (*ITAG) Solyc03g080070.2.1 (e_value=2e-14) genomic_reference:SL2.40ch03 gene_region:45506478-45509718 transcript_region:SL2.40ch03:45506478..45509718+ go_terms:GO:0016020 functional_description:"Nodulin-like protein (AHRD V1 ***- Q8H8G2_ORYSJ); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00009714g0006.1 protein ; (*GB) gi|357155670|ref|XP_003577197.1| (e_value=4e-24) PREDICTED: uncharacterized protein LOC100836689 [Brachypodium distachyon]; NbS00006821g0015.1 protein ; (*GB) gi|357133151|ref|XP_003568191.1| (e_value=3e-19) PREDICTED: putative uncharacterized protein YCR013C-like [Brachypodium distachyon]; NbS00024104g0011.1 protein ; (*GB) gi|255587370|ref|XP_002534249.1| (e_value=1e-13) conserved hypothetical protein [Ricinus communis]; NbS00024104g0012.1 protein ; (*TAIR) AT2G35340.1 (e_value=1e-13) | Symbols: MEE29 | helicase domain-containing protein | chr2:14872728-14879615 FORWARD LENGTH=1044;; (*ITAG) Solyc12g017700.1.1 (e_value=6e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:7243976-7246877 transcript_region:SL2.40ch12:7243976..7246877- go_terms:GO:0004386,GO:0008026,GO:0005524,GO:0017111 functional_description:"ATP-dependent RNA helicase (AHRD V1 ***- Q16S17_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524,GO:0017111 NbS00024104g0010.1 protein NbS00015901g0003.1 protein NbS00015901g0005.1 protein NbS00000223g0016.1 protein NbS00035123g0005.1 protein NbC25842293g0001.1 protein ; (*ITAG) Solyc05g051800.2.1 (e_value=2e-28) genomic_reference:SL2.40ch05 gene_region:61323948-61327520 transcript_region:SL2.40ch05:61323948..61327520+ go_terms:GO:0005515 functional_description:"Zinc finger C3HC4 type family protein (AHRD V1 ***- B6TBG5_MAIZE); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0005515 NbS00014471g0008.1 protein ; (*GB) gi|356543329|ref|XP_003540114.1| (e_value=3e-64) PREDICTED: UPF0133 protein Synpcc7942_0464-like [Glycine max];; (*TAIR) AT4G30620.1 (e_value=1e-55) | Symbols: | Uncharacterised BCR, YbaB family COG0718 | chr4:14948724-14950035 REVERSE LENGTH=180;; (*ITAG) Solyc12g009980.1.1 (e_value=1e-87) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:3123673-3130024 transcript_region:SL2.40ch12:3123673..3130024+ functional_description:"Complex interacting protein 9 (AHRD V1 ***- Q8LDX3_ARATH); contains Interpro domain(s) IPR004401 Uncharacterised protein family UPF0133 "; NbS00009283g0007.1 protein NbS00043254g0001.1 protein ; (*GB) gi|224108798|ref|XP_002314971.1| (e_value=1e-17) gibberellin 2-oxidase [Populus trichocarpa];; (*ITAG) Solyc01g058030.1.1 (e_value=8e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:57859882-57861112 transcript_region:SL2.40ch01:57859882..57861112- go_terms:GO:0045543 functional_description:"Gibberellin 2-oxidase (AHRD V1 **** A4GVL5_SOLLC); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0045543 NbS00001212g0006.1 protein NbS00010575g0006.1 protein NbS00010575g0008.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=1e-57) ty1-copia retrotransposon protein [Cucumis melo subsp. melo];; (*TAIR) AT4G00980.1 (e_value=3e-17) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:422732-424580 REVERSE LENGTH=488; NbS00013593g0104.1 protein NbS00013593g0105.1 protein NbS00034704g0004.1 protein NbS00000845g0014.1 protein NbS00000845g0007.1 protein NbS00000845g0008.1 protein NbS00039196g0001.1 protein NbS00039196g0002.1 protein NbS00034934g0003.1 protein ; (*GB) gi|225449044|ref|XP_002274159.1| (e_value=1e-40) PREDICTED: endoplasmic reticulum metallopeptidase 1 [Vitis vinifera];; (*TAIR) AT5G20660.2 (e_value=6e-33) | Symbols: | Zn-dependent exopeptidases superfamily protein | chr5:6989708-6990947 FORWARD LENGTH=301;; (*ITAG) Solyc04g025260.2.1 (e_value=1e-66) genomic_reference:SL2.40ch04 gene_region:18443059-18472464 transcript_region:SL2.40ch04:18443059..18472464+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_HUMAN); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00034934g0004.1 protein ; (*ITAG) Solyc04g025260.2.1 (e_value=9e-32) genomic_reference:SL2.40ch04 gene_region:18443059-18472464 transcript_region:SL2.40ch04:18443059..18472464+ go_terms:GO:0006508 functional_description:"Endoplasmic reticulum metallopeptidase 1 (AHRD V1 **-- ERMP1_HUMAN); contains Interpro domain(s) IPR007484 Peptidase M28 "; GO:0006508 NbS00009199g0103.1 protein NbS00009199g0104.1 protein NbS00053547g0005.1 protein NbS00026502g0004.1 protein ; (*ITAG) Solyc01g073870.2.1 (e_value=1e-21) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00012241g0007.1 protein NbS00012241g0010.1 protein NbS00025902g0004.1 protein ; (*GB) gi|113205385|gb|ABI34372.1| (e_value=4e-13) RNase H family protein [Solanum demissum]; NbS00025902g0005.1 protein NbS00008307g0002.1 protein ; (*GB) gi|389986119|gb|AFL46177.1| (e_value=6e-119) jasmonate ZIM domain protein l [Nicotiana attenuata];; (*TAIR) AT5G20900.1 (e_value=6e-13) | Symbols: JAZ12, TIFY3B | jasmonate-zim-domain protein 12 | chr5:7090883-7092201 FORWARD LENGTH=187;; (*ITAG) Solyc01g103600.2.1 (e_value=3e-35) genomic_reference:SL2.40ch01 gene_region:83937777-83940070 transcript_region:SL2.40ch01:83937777..83940070- go_terms:GO:0005515 functional_description:"Protein TIFY 3A (AHRD V1 **-- TIF3A_ARATH); contains Interpro domain(s) IPR010399 Tify "; GO:0005515 NbS00037898g0003.1 protein NbS00019397g0006.1 protein NbS00016724g0006.1 protein ; (*GB) gi|255574611|ref|XP_002528216.1| (e_value=2e-23) conserved hypothetical protein [Ricinus communis]; NbS00022605g0012.1 protein NbS00045477g0003.1 protein ; (*ITAG) Solyc03g034200.2.1 (e_value=3e-57) genomic_reference:SL2.40ch03 gene_region:10162350-10168111 transcript_region:SL2.40ch03:10162350..10168111- go_terms:GO:0003676 functional_description:"KH domain containing protein expressed (AHRD V1 **-- Q8LNT9_ORYSJ); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00020701g0006.1 protein NbS00004683g0011.1 protein ; (*GB) gi|224143447|ref|XP_002324959.1| (e_value=1e-18) predicted protein [Populus trichocarpa];; (*SWP) sp|O81016|AB32G_ARATH (e_value=1e-18) ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1;; (*TAIR) AT2G26910.1 (e_value=7e-20) | Symbols: PDR4, ATPDR4 | pleiotropic drug resistance 4 | chr2:11481623-11487874 FORWARD LENGTH=1420;; (*ITAG) Solyc05g018510.2.1 (e_value=8e-23) genomic_reference:SL2.40ch05 gene_region:22096967-22107681 transcript_region:SL2.40ch05:22096967..22107681+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 32 (AHRD V1 ***- AB32G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbC24263043g0001.1 protein ; (*GB) gi|255542116|ref|XP_002512122.1| (e_value=2e-23) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SUH6|PP341_ARATH (e_value=2e-16) Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1;; (*TAIR) AT4G30700.1 (e_value=1e-17) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792;; (*ITAG) Solyc05g012630.1.1 (e_value=3e-33) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:5830133-5832394 transcript_region:SL2.40ch05:5830133..5832394+ go_terms:GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0034046 NbC23481810g0001.1 protein ; (*ITAG) Solyc11g072730.1.1 (e_value=3e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00013081g0002.1 protein NbS00013081g0104.1 protein NbS00020940g0008.1 protein NbS00024734g0006.1 protein NbS00034017g0010.1 protein NbS00029402g0009.1 protein NbS00023173g0004.1 protein ; (*GB) gi|307136292|gb|ADN34118.1| (e_value=8e-22) hypothetical protein [Cucumis melo subsp. melo]; NbS00014856g0001.1 protein ; (*GB) gi|357517837|ref|XP_003629207.1| (e_value=1e-19) GDSL esterase/lipase [Medicago truncatula];; (*SWP) sp|Q8LB81|GDL79_ARATH (e_value=2e-16) GDSL esterase/lipase At5g33370 OS=Arabidopsis thaliana GN=At5g33370 PE=2 SV=1;; (*TAIR) AT5G33370.1 (e_value=2e-17) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602773-12604670 REVERSE LENGTH=366;; (*ITAG) Solyc02g083160.1.1 (e_value=5e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41240608-41242196 transcript_region:SL2.40ch02:41240608..41242196+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g33370 (AHRD V1 ***- GDL79_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00001163g0006.1 protein NbS00028595g0002.1 protein NbS00040559g0003.1 protein NbS00041535g0002.1 protein NbS00040728g0005.1 protein NbS00020053g0005.1 protein NbS00032166g0001.1 protein NbS00004534g0003.1 protein ; (*GB) gi|22329525|ref|NP_172760.2| (e_value=6e-16) uncharacterized protein [Arabidopsis thaliana];; (*TAIR) AT1G13000.2 (e_value=1e-18) | Symbols: | Protein of unknown function (DUF707) | chr1:4436402-4438693 REVERSE LENGTH=401;; (*ITAG) Solyc02g093480.2.1 (e_value=9e-20) genomic_reference:SL2.40ch02 gene_region:48912692-48918328 transcript_region:SL2.40ch02:48912692..48918328- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00013809g0003.1 protein NbS00013809g0005.1 protein ; (*GB) gi|225451130|ref|XP_002266266.1| (e_value=1e-13) PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera];; (*ITAG) Solyc01g067720.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:69048806-69053954 transcript_region:SL2.40ch01:69048806..69053954- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 *-*- Q1ANA7_WHEAT); contains Interpro domain(s) IPR000535 Major sperm protein "; GO:0005198 NbS00013809g0006.1 protein ; (*ITAG) Solyc01g067720.2.1 (e_value=1e-30) genomic_reference:SL2.40ch01 gene_region:69048806-69053954 transcript_region:SL2.40ch01:69048806..69053954- go_terms:GO:0005198 functional_description:"Vesicle-associated membrane protein-associated protein (AHRD V1 *-*- Q1ANA7_WHEAT); contains Interpro domain(s) IPR000535 Major sperm protein "; GO:0005198 NbS00000409g0003.1 protein NbS00000848g0002.1 protein NbS00024632g0003.1 protein NbS00024632g0008.1 protein NbS00036186g0007.1 protein NbS00054339g0003.1 protein NbS00005372g0002.1 protein NbS00034847g0001.1 protein NbS00008640g0002.1 protein NbS00008640g0003.1 protein NbS00025547g0002.1 protein NbS00025547g0003.1 protein NbS00022997g0002.1 protein NbS00035149g0004.1 protein NbS00008747g0006.1 protein NbS00005572g0104.1 protein NbS00005572g0106.1 protein NbS00023511g0011.1 protein NbS00017651g0002.1 protein NbS00028162g0004.1 protein NbS00005802g0110.1 protein NbS00000565g0011.1 protein ; (*ITAG) Solyc01g096550.2.1 (e_value=3e-20) genomic_reference:SL2.40ch01 gene_region:79391836-79397141 transcript_region:SL2.40ch01:79391836..79397141+ go_terms:GO:0035242 functional_description:"Protein arginine methyltransferase (AHRD V1 *-** C1E5H4_9CHLO); contains Interpro domain(s) IPR013216 Methyltransferase type 11 "; GO:0035242 NbS00000565g0013.1 protein NbS00013304g0112.1 protein NbS00021773g0002.1 protein NbS00014806g0003.1 protein NbS00026982g0001.1 protein NbS00026982g0002.1 protein NbS00001662g0002.1 protein NbS00002678g0104.1 protein NbS00011212g0001.1 protein NbS00035929g0004.1 protein NbS00002157g0004.1 protein NbS00022948g0002.1 protein NbS00022948g0004.1 protein NbS00061774g0001.1 protein NbS00013486g0002.1 protein NbS00034872g0003.1 protein NbS00026263g0006.1 protein NbS00026263g0010.1 protein NbS00006968g0006.1 protein NbS00006968g0007.1 protein NbS00006968g0009.1 protein NbS00038841g0001.1 protein ; (*GB) gi|225439781|ref|XP_002276042.1| (e_value=6e-22) PREDICTED: serine/threonine-protein kinase PBS1 [Vitis vinifera];; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=9e-15) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1;; (*TAIR) AT5G18610.2 (e_value=3e-18) | Symbols: | Protein kinase superfamily protein | chr5:6192736-6195371 FORWARD LENGTH=513;; (*ITAG) Solyc09g007170.2.1 (e_value=2e-33) genomic_reference:SL2.40ch09 gene_region:793123-799599 transcript_region:SL2.40ch09:793123..799599- go_terms:GO:0005515,GO:0004674 functional_description:"Serine/threonine kinase (AHRD V1 **** Q32SF8_HORVD); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00038028g0003.1 protein NbS00062251g0005.1 protein NbS00004264g0011.1 protein NbS00004264g0019.1 protein NbS00010093g0006.1 protein NbS00053423g0004.1 protein NbS00026041g0005.1 protein ; (*GB) gi|359480262|ref|XP_002265742.2| (e_value=4e-20) PREDICTED: universal stress protein MJ0531-like isoform 2 [Vitis vinifera];; (*TAIR) AT2G47710.1 (e_value=1e-17) | Symbols: | Adenine nucleotide alpha hydrolases-like superfamily protein | chr2:19555045-19555956 REVERSE LENGTH=162;; (*ITAG) Solyc06g009050.2.1 (e_value=1e-22) genomic_reference:SL2.40ch06 gene_region:2979605-2982262 transcript_region:SL2.40ch06:2979605..2982262+ go_terms:GO:0006950 functional_description:"Universal stress protein (AHRD V1 ***- B4UW73_ARAHY); contains Interpro domain(s) IPR006016 UspA "; GO:0006950 NbS00026041g0006.1 protein NbS00016617g0001.1 protein NbS00003527g0004.1 protein ; (*GB) gi|225432039|ref|XP_002280185.1| (e_value=7e-56) PREDICTED: uncharacterized protein LOC100246610 [Vitis vinifera];; (*SWP) sp|Q0AIY0|DNAJ_NITEC (e_value=3e-12) Chaperone protein DnaJ OS=Nitrosomonas eutropha (strain C91) GN=dnaJ PE=3 SV=1;; (*TAIR) AT5G49580.1 (e_value=7e-43) | Symbols: | Chaperone DnaJ-domain superfamily protein | chr5:20123823-20126813 REVERSE LENGTH=695;; (*ITAG) Solyc07g026810.2.1 (e_value=4e-75) genomic_reference:SL2.40ch07 gene_region:31740324-31752580 transcript_region:SL2.40ch07:31740324..31752580- go_terms:GO:0006457,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 *-*- C2KX40_9FIRM); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0006457,GO:0031072 NbS00003527g0005.1 protein ; (*ITAG) Solyc10g076170.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:58305883-58306419 transcript_region:SL2.40ch10:58305883..58306419+ functional_description:"Unknown Protein (AHRD V1)"; NbS00003527g0006.1 protein NbS00050334g0001.1 protein ; (*GB) gi|224088208|ref|XP_002308371.1| (e_value=2e-34) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SAK5|APL_ARATH (e_value=2e-17) Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2;; (*TAIR) AT5G06800.2 (e_value=2e-33) | Symbols: | myb-like HTH transcriptional regulator family protein | chr5:2103374-2105186 FORWARD LENGTH=302;; (*ITAG) Solyc10g080460.1.1 (e_value=1e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:61051696-61053673 transcript_region:SL2.40ch10:61051696..61053673- go_terms:GO:0045449 functional_description:"MYB transcription factor (AHRD V1 *--- Q5IWM2_WHEAT); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00005064g0005.1 protein NbS00035165g0002.1 protein ; (*GB) gi|359476835|ref|XP_002266579.2| (e_value=5e-14) PREDICTED: uncharacterized protein LOC100259067 [Vitis vinifera];; (*ITAG) Solyc02g062290.2.1 (e_value=9e-31) genomic_reference:SL2.40ch02 gene_region:28453610-28458350 transcript_region:SL2.40ch02:28453610..28458350+ go_terms:GO:0003676,GO:0000166 functional_description:"Polyadenylate-binding protein (AHRD V1 *--- C1GL98_PARBD); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "; GO:0003676,GO:0000166 NbS00003405g0002.1 protein NbS00003405g0006.1 protein NbS00007852g0014.1 protein NbS00007852g0022.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-33) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00002491g0002.1 protein NbS00024948g0004.1 protein NbS00002365g0011.1 protein NbS00002365g0016.1 protein NbS00027793g0002.1 protein NbS00037277g0005.1 protein NbS00000024g0004.1 protein NbS00003885g0001.1 protein NbS00024193g0003.1 protein NbS00006851g0004.1 protein ; (*ITAG) Solyc05g053450.2.1 (e_value=3e-14) genomic_reference:SL2.40ch05 gene_region:62666830-62668268 transcript_region:SL2.40ch05:62666830..62668268+ functional_description:"Late embryogenesis abundant protein 1 (AHRD V1 *-*- LEA1_CICAR)"; NbS00041738g0001.1 protein NbS00028845g0009.1 protein NbS00034467g0002.1 protein NbS00034467g0003.1 protein NbS00012923g0005.1 protein NbS00010509g0005.1 protein NbS00010509g0010.1 protein NbS00015287g0102.1 protein NbS00015287g0104.1 protein NbS00051413g0003.1 protein NbS00016799g0005.1 protein NbS00016799g0006.1 protein NbS00023965g0006.1 protein NbS00028566g0002.1 protein NbS00060999g0003.1 protein NbS00035658g0004.1 protein NbS00032259g0003.1 protein ; (*ITAG) Solyc11g056470.1.1 (e_value=2e-27) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:43152568-43153965 transcript_region:SL2.40ch11:43152568..43153965+ functional_description:"Unknown Protein (AHRD V1)"; NbS00020819g0011.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=2e-32) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006644g0006.1 protein NbS00006644g0007.1 protein ; (*GB) gi|296090475|emb|CBI40671.3| (e_value=3e-18) unnamed protein product [Vitis vinifera];; (*TAIR) AT5G16780.1 (e_value=2e-12) | Symbols: DOT2, MDF | SART-1 family | chr5:5517784-5521566 REVERSE LENGTH=820;; (*ITAG) Solyc11g008460.1.1 (e_value=5e-28) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2656557-2660047 transcript_region:SL2.40ch11:2656557..2660047+ functional_description:"U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V1 *--- SNUT1_MOUSE); contains Interpro domain(s) IPR005011 SART-1 protein "; NbS00006644g0106.1 protein NbS00006644g0108.1 protein NbS00006644g0110.1 protein NbS00017807g0002.1 protein NbS00025991g0002.1 protein NbS00037767g0002.1 protein NbS00026292g0015.1 protein ; (*GB) gi|356519419|ref|XP_003528370.1| (e_value=3e-25) PREDICTED: katanin p60 ATPase-containing subunit-like [Glycine max];; (*SWP) sp|Q9SEX2|KTNA1_ARATH (e_value=2e-24) Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1;; (*TAIR) AT1G80350.1 (e_value=2e-25) | Symbols: ERH3, AAA1, FRA2, LUE1, ATKTN1, KTN1, FRC2, BOT1, FTR | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30205499-30208050 REVERSE LENGTH=523;; (*ITAG) Solyc12g040520.1.1 (e_value=1e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:39619675-39623965 transcript_region:SL2.40ch12:39619675..39623965- go_terms:GO:0005524,GO:0017111 functional_description:"Katanin p60 ATPase-containing subunit (AHRD V1 *--- B6TID9_MAIZE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00026292g0019.1 protein NbS00053907g0001.1 protein NbS00004203g0003.1 protein NbS00032966g0005.1 protein NbS00011002g0005.1 protein NbS00011002g0006.1 protein NbS00014557g0003.1 protein NbS00014557g0104.1 protein NbS00014557g0105.1 protein NbS00011370g0006.1 protein ; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=2e-15) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=9e-15) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=7e-16) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00011370g0007.1 protein NbS00011370g0008.1 protein ; (*GB) gi|255544986|ref|XP_002513554.1| (e_value=4e-25) glutamate synthase, putative [Ricinus communis];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=3e-25) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=2e-26) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00003368g0103.1 protein NbS00009594g0004.1 protein NbS00003362g0002.1 protein NbS00060842g0002.1 protein NbS00037521g0003.1 protein NbC25467974g0002.1 protein ; (*GB) gi|119391879|emb|CAF04055.2| (e_value=3e-38) S-adenosylmethionine transporter [Nicotiana benthamiana];; (*TAIR) AT1G34065.1 (e_value=6e-36) | Symbols: SAMC2 | S-adenosylmethionine carrier 2 | chr1:12398717-12401036 REVERSE LENGTH=345;; (*ITAG) Solyc04g051580.2.1 (e_value=1e-40) genomic_reference:SL2.40ch04 gene_region:50020620-50028376 transcript_region:SL2.40ch04:50020620..50028376- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00053641g0001.1 protein NbS00044565g0002.1 protein NbS00008906g0003.1 protein NbS00028434g0001.1 protein NbS00031793g0001.1 protein ; (*ITAG) Solyc06g082340.1.1 (e_value=6e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:44478552-44479857 transcript_region:SL2.40ch06:44478552..44479857- functional_description:"F-box family protein (AHRD V1 ***- D7L4T6_ARALY); contains Interpro domain(s) IPR017451 F-box associated type 1 "; NbS00014072g0002.1 protein ; (*GB) gi|224061153|ref|XP_002300359.1| (e_value=2e-37) predicted protein [Populus trichocarpa];; (*TAIR) AT4G37190.2 (e_value=5e-31) | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:17507453-17509512 FORWARD LENGTH=516;; (*ITAG) Solyc01g100190.2.1 (e_value=7e-59) genomic_reference:SL2.40ch01 gene_region:82009421-82017397 transcript_region:SL2.40ch01:82009421..82017397+ functional_description:"Misato homolog 1 (AHRD V1 *--- C1BN10_9MAXI); contains Interpro domain(s) IPR019746 Tubulin/FtsZ, N-terminal "; NbS00021192g0005.1 protein NbC24436254g0001.1 protein ; (*GB) gi|147857536|emb|CAN80381.1| (e_value=1e-29) hypothetical protein VITISV_015320 [Vitis vinifera];; (*TAIR) AT1G04780.1 (e_value=3e-27) | Symbols: | Ankyrin repeat family protein | chr1:1340891-1342965 REVERSE LENGTH=664;; (*ITAG) Solyc09g091560.2.1 (e_value=3e-33) genomic_reference:SL2.40ch09 gene_region:66163104-66169198 transcript_region:SL2.40ch09:66163104..66169198+ functional_description:"Ankyrin repeat domain-containing protein 13C-A (AHRD V1 *-*- C0H9Z7_SALSA); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00050080g0003.1 protein ; (*ITAG) Solyc07g023940.1.1 (e_value=7e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:23442429-23443070 transcript_region:SL2.40ch07:23442429..23443070+ go_terms:GO:0055114 functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; GO:0055114 NbS00007534g0004.1 protein NbS00005266g0012.1 protein ; (*GB) gi|359490131|ref|XP_002279967.2| (e_value=8e-125) PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera];; (*SWP) sp|Q3ECH2|Y1670_ARATH (e_value=5e-65) Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2;; (*TAIR) AT1G66910.1 (e_value=3e-70) | Symbols: | Protein kinase superfamily protein | chr1:24961634-24963941 REVERSE LENGTH=666;; (*ITAG) Solyc02g081500.2.1 (e_value=4e-92) genomic_reference:SL2.40ch02 gene_region:40016588-40018642 transcript_region:SL2.40ch02:40016588..40018642+ go_terms:GO:0006468 functional_description:"Receptor-like kinase (AHRD V1 ***- Q9LKY7_ORYSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00005266g0015.1 protein NbS00000600g0007.1 protein NbS00016257g0005.1 protein NbS00016257g0006.1 protein NbS00016257g0009.1 protein NbS00009582g0002.1 protein NbS00009582g0101.1 protein NbS00009582g0203.1 protein NbS00009582g0205.1 protein NbS00009582g0206.1 protein NbS00039817g0003.1 protein ; (*GB) gi|350536369|ref|NP_001234755.1| (e_value=5e-70) lecithine cholesterol acyltransferase-like protein [Solanum lycopersicum];; (*SWP) sp|Q71N54|LCAT4_ARATH (e_value=1e-29) Lecithine-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=2 SV=1;; (*TAIR) AT4G19860.1 (e_value=9e-31) | Symbols: | alpha/beta-Hydrolases superfamily protein | chr4:10777655-10780260 REVERSE LENGTH=535;; (*ITAG) Solyc02g068920.2.1 (e_value=1e-72) genomic_reference:SL2.40ch02 gene_region:33380676-33389274 transcript_region:SL2.40ch02:33380676..33389274- go_terms:GO:0006629 functional_description:"Lecithin cholesterol acyltransferase (AHRD V1 ***- A2Q294_MEDTR); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00009883g0006.1 protein NbS00007076g0002.1 protein ; (*GB) gi|54606728|dbj|BAD66751.1| (e_value=8e-17) orf764 [Beta vulgaris subsp. vulgaris]; NbS00000716g0001.1 protein ; (*ITAG) Solyc10g044880.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:24180893-24181228 transcript_region:SL2.40ch10:24180893..24181228- functional_description:"Unknown Protein (AHRD V1)"; NbS00009323g0003.1 protein NbS00004528g0003.1 protein NbS00008202g0002.1 protein ; (*GB) gi|255577256|ref|XP_002529510.1| (e_value=6e-49) pentatricopeptide repeat-containing protein, putative [Ricinus communis];; (*SWP) sp|Q9SAJ5|PP133_ARATH (e_value=6e-40) Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1;; (*TAIR) AT1G79540.1 (e_value=4e-41) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:29920334-29922676 REVERSE LENGTH=780;; (*ITAG) Solyc02g083780.1.1 (e_value=1e-69) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:41627837-41631881 transcript_region:SL2.40ch02:41627837..41631881- go_terms:GO:0016773 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KWJ0_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0016773 NbS00037260g0006.1 protein NbS00015765g0002.1 protein NbS00022595g0001.1 protein NbS00007311g0008.1 protein NbS00022663g0004.1 protein NbC25470496g0001.1 protein ; (*GB) gi|297740447|emb|CBI30629.3| (e_value=1e-31) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G28520.2 (e_value=3e-31) | Symbols: VOZ1 | vascular plant one zinc finger protein | chr1:10029713-10031479 FORWARD LENGTH=486;; (*ITAG) Solyc10g008880.2.1 (e_value=3e-44) genomic_reference:SL2.40ch10 gene_region:2920272-2924119 transcript_region:SL2.40ch10:2920272..2924119- go_terms:GO:0016563 functional_description:"One zinc finger protein (AHRD V1 **-- Q75PR0_PHYPA)"; GO:0016563 NbS00001192g0010.1 protein NbS00019328g0001.1 protein NbS00021019g0003.1 protein NbS00014880g0007.1 protein NbS00018327g0004.1 protein NbS00018327g0006.1 protein NbS00039037g0002.1 protein NbS00045400g0002.1 protein NbS00047142g0002.1 protein NbS00001545g0002.1 protein NbS00013968g0005.1 protein NbS00013968g0010.1 protein NbS00042189g0005.1 protein NbS00024031g0004.1 protein NbS00010173g0003.1 protein NbS00003221g0007.1 protein NbS00015594g0006.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=5e-27) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=2e-24) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=3e-52) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00032796g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-25) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00023962g0002.1 protein ; (*GB) gi|296081215|emb|CBI18241.3| (e_value=1e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G09830.1 (e_value=2e-25) | Symbols: | Uncharacterised conserved protein UCP009193 | chr4:6188866-6190591 FORWARD LENGTH=191;; (*ITAG) Solyc12g056630.1.1 (e_value=4e-30) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:47968363-47975402 transcript_region:SL2.40ch12:47968363..47975402- functional_description:"Holocarboxylase synthetase (Fragment) (AHRD V1 ***- Q7X9L1_WHEAT); contains Interpro domain(s) IPR016549 Uncharacterised conserved protein UCP009193 "; NbS00043009g0006.1 protein NbC25216307g0001.1 protein ; (*GB) gi|224111164|ref|XP_002315767.1| (e_value=5e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT3G22510.1 (e_value=3e-20) | Symbols: | Pre-rRNA-processing protein TSR2, conserved region | chr3:7973544-7974087 FORWARD LENGTH=124;; (*ITAG) Solyc01g096760.2.1 (e_value=8e-17) genomic_reference:SL2.40ch01 gene_region:79542130-79546287 transcript_region:SL2.40ch01:79542130..79546287- functional_description:"Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region "; NbS00013842g0002.1 protein NbS00013842g0004.1 protein NbS00007788g0001.1 protein NbS00009137g0012.1 protein NbS00009137g0016.1 protein NbS00009137g0009.1 protein NbS00024691g0006.1 protein NbS00024691g0104.1 protein NbS00002659g0003.1 protein ; (*GB) gi|57013964|ref|YP_173436.1| (e_value=1e-37) hypothetical protein NitaMp098 [Nicotiana tabacum]; NbS00048485g0001.1 protein NbS00004239g0004.1 protein NbS00009176g0004.1 protein NbS00009176g0006.1 protein ; (*GB) gi|124360723|gb|ABN08700.1| (e_value=3e-21) Endonuclease/exonuclease/phosphatase [Medicago truncatula]; NbS00009176g0007.1 protein NbC23675126g0001.1 protein ; (*ITAG) Solyc06g054140.2.1 (e_value=2e-17) genomic_reference:SL2.40ch06 gene_region:33451918-33459215 transcript_region:SL2.40ch06:33451918..33459215+ functional_description:"Unknown Protein (AHRD V1)"; NbS00006558g0003.1 protein ; (*GB) gi|85068622|gb|ABC69391.1| (e_value=2e-22) CYP72A53v2 [Nicotiana tabacum];; (*ITAG) Solyc10g051020.1.1 (e_value=1e-18) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch10 gene_region:46848983-46854212 transcript_region:SL2.40ch10:46848983..46854212- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00004835g0001.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=2e-12) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00004835g0003.1 protein NbS00004835g0106.1 protein NbS00001744g0004.1 protein NbS00001744g0006.1 protein NbS00009474g0005.1 protein NbS00019385g0002.1 protein NbS00016770g0006.1 protein NbS00042705g0002.1 protein NbC25184358g0002.1 protein ; (*GB) gi|224101161|ref|XP_002312165.1| (e_value=5e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FFF9|APC1_ARATH (e_value=1e-26) Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1;; (*TAIR) AT5G05560.1 (e_value=7e-28) | Symbols: EMB2771 | E3 ubiquitin ligase, putative | chr5:1641452-1654685 FORWARD LENGTH=1678;; (*ITAG) Solyc06g048460.1.1 (e_value=3e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:27568152-27584660 transcript_region:SL2.40ch06:27568152..27584660+ go_terms:GO:0016887 functional_description:"Anaphase promoting complex subunit 1 (AHRD V1 ***- A2ATQ4_MOUSE); contains Interpro domain(s) IPR002015 Proteasome/cyclosome, regulatory subunit "; GO:0016887 NbS00003219g0002.1 protein NbS00031691g0012.1 protein NbS00031691g0006.1 protein NbS00031691g0010.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=3e-29) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00004147g0003.1 protein NbS00014047g0007.1 protein NbS00014047g0008.1 protein NbS00014047g0009.1 protein NbS00014047g0010.1 protein NbS00011649g0005.1 protein NbS00058256g0002.1 protein NbS00004919g0007.1 protein ; (*GB) gi|255537761|ref|XP_002509947.1| (e_value=8e-34) serine-threonine protein kinase, plant-type, putative [Ricinus communis];; (*ITAG) Solyc06g082610.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:44662023-44664895 transcript_region:SL2.40ch06:44662023..44664895- go_terms:GO:0005515,GO:0004674 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004674 NbS00012651g0203.1 protein NbS00017372g0008.1 protein NbS00010516g0003.1 protein ; (*GB) gi|4887756|gb|AAD32292.1| (e_value=2e-14) putative protein kinase [Arabidopsis thaliana];; (*TAIR) AT2G31800.1 (e_value=5e-17) | Symbols: | Integrin-linked protein kinase family | chr2:13520605-13523646 REVERSE LENGTH=476;; (*ITAG) Solyc12g019410.1.1 (e_value=6e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00043547g0006.1 protein NbS00039441g0003.1 protein NbS00015050g0003.1 protein ; (*GB) gi|225440702|ref|XP_002274939.1| (e_value=2e-42) PREDICTED: uncharacterized protein LOC100242503 [Vitis vinifera];; (*TAIR) AT5G27010.1 (e_value=1e-27) | Symbols: | ARM repeat superfamily protein | chr5:9503315-9507569 REVERSE LENGTH=863;; (*ITAG) Solyc01g007140.2.1 (e_value=1e-65) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00004358g0007.1 protein NbS00001564g0011.1 protein NbS00001564g0008.1 protein NbS00017922g0003.1 protein NbS00033955g0003.1 protein NbS00018812g0003.1 protein NbS00014817g0004.1 protein NbS00007198g0006.1 protein NbS00005638g0206.1 protein NbS00017721g0005.1 protein NbS00017721g0006.1 protein NbS00017721g0007.1 protein NbS00032364g0003.1 protein NbS00014311g0003.1 protein NbS00014311g0004.1 protein NbS00036853g0004.1 protein NbS00036853g0006.1 protein NbS00000746g0006.1 protein NbS00000746g0008.1 protein NbS00006434g0004.1 protein NbS00039372g0005.1 protein NbS00039372g0006.1 protein NbS00039372g0008.1 protein NbS00046856g0002.1 protein ; (*ITAG) Solyc09g007060.2.1 (e_value=4e-13) genomic_reference:SL2.40ch09 gene_region:712078-714475 transcript_region:SL2.40ch09:712078..714475+ go_terms:GO:0006508,GO:0008270 functional_description:"RING finger protein 44 (AHRD V1 *--- RNF44_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0006508,GO:0008270 NbS00019274g0001.1 protein NbS00018912g0006.1 protein ; (*GB) gi|12585487|sp|Q9SCB9.1|VATC_HORVU (e_value=4e-23) RecName: Full=V-type proton ATPase subunit C; Short=V-ATPase subunit C; AltName: Full=Vacuolar proton pump subunit C;; (*SWP) sp|Q9SCB9|VATC_HORVU (e_value=1e-24) V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1;; (*TAIR) AT1G12840.1 (e_value=4e-22) | Symbols: DET3, ATVHA-C | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) | chr1:4375584-4378220 FORWARD LENGTH=375;; (*ITAG) Solyc03g097790.2.1 (e_value=4e-31) genomic_reference:SL2.40ch03 gene_region:53564540-53576586 transcript_region:SL2.40ch03:53564540..53576586+ go_terms:GO:0005515,GO:0046961 functional_description:"V-type proton ATPase subunit C (AHRD V1 **** VATC_ARATH); contains Interpro domain(s) IPR004907 ATPase, V1 complex, subunit C "; GO:0005515,GO:0046961 NbC24903745g0001.1 protein ; (*GB) gi|356573304|ref|XP_003554802.1| (e_value=6e-31) PREDICTED: ion channel CASTOR [Glycine max];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=5e-31) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=4e-27) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc03g059150.2.1 (e_value=6e-34) genomic_reference:SL2.40ch03 gene_region:25210154-25212182 transcript_region:SL2.40ch03:25210154..25212182+ functional_description:"DMI1 protein (Fragment) (AHRD V1 ***- A9DNT9_MEDTR)"; NbS00020026g0003.1 protein NbS00006620g0005.1 protein NbS00006620g0008.1 protein NbS00040862g0003.1 protein ; (*GB) gi|147844313|emb|CAN82111.1| (e_value=7e-20) hypothetical protein VITISV_002744 [Vitis vinifera]; NbS00015848g0003.1 protein NbS00026572g0003.1 protein NbS00036887g0002.1 protein NbS00036887g0003.1 protein NbS00004403g0005.1 protein NbS00004403g0007.1 protein NbS00002474g0009.1 protein ; (*GB) gi|356566722|ref|XP_003551578.1| (e_value=3e-21) PREDICTED: uncharacterized protein LOC100811782 [Glycine max];; (*TAIR) AT5G01660.1 (e_value=9e-21) | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656;; (*ITAG) Solyc10g076340.1.1 (e_value=2e-29) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:58609555-58617793 transcript_region:SL2.40ch10:58609555..58617793+ functional_description:"Kelch-like protein (AHRD V1 *-*- Q84S70_ORYSJ); contains Interpro domain(s) IPR013989 Development and cell death domain "; NbS00018691g0002.1 protein NbS00007600g0003.1 protein NbS00007600g0004.1 protein ; (*GB) gi|359491245|ref|XP_002279402.2| (e_value=2e-77) PREDICTED: serine/threonine-protein kinase ATM [Vitis vinifera];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=8e-61) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=6e-62) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112950.2.1 (e_value=2e-119) genomic_reference:SL2.40ch03 gene_region:57309377-57340774 transcript_region:SL2.40ch03:57309377..57340774+ go_terms:GO:0016773 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- D2V0W7_NAEGR); contains Interpro domain(s) IPR015519 Ataxia-Telangiectasia Mutated "; GO:0016773 NbS00007600g0008.1 protein NbS00006011g0003.1 protein NbS00006011g0112.1 protein NbS00006011g0108.1 protein NbS00006011g0109.1 protein NbS00006011g0206.1 protein NbS00004994g0005.1 protein NbS00002715g0011.1 protein ; (*GB) gi|255560699|ref|XP_002521363.1| (e_value=1e-62) threonine synthase, putative [Ricinus communis];; (*SWP) sp|Q9MT28|THRC_SOLTU (e_value=2e-62) Threonine synthase, chloroplastic OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT4G29840.1 (e_value=4e-63) | Symbols: MTO2, TS | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr4:14599434-14601014 REVERSE LENGTH=526;; (*ITAG) Solyc03g121910.1.1 (e_value=2e-64) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:63979551-63981110 transcript_region:SL2.40ch03:63979551..63981110- go_terms:GO:0004795 functional_description:"Threonine synthase (AHRD V1 **** Q2Q021_SOYBN); contains Interpro domain(s) IPR004450 Threonine synthase "; GO:0004795 NbS00019967g0005.1 protein NbS00019967g0008.1 protein NbS00012698g0005.1 protein NbS00019310g0006.1 protein NbS00013475g0011.1 protein NbS00025720g0001.1 protein NbS00025720g0002.1 protein NbS00028004g0001.1 protein NbS00017466g0009.1 protein NbS00050310g0004.1 protein ; (*ITAG) Solyc11g005410.1.1 (e_value=4e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:321174-323067 transcript_region:SL2.40ch11:321174..323067+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00004708g0006.1 protein NbS00004708g0010.1 protein NbS00052272g0005.1 protein NbS00011637g0004.1 protein NbS00008873g0009.1 protein NbS00026094g0016.1 protein NbS00026094g0009.1 protein NbS00016179g0006.1 protein ; (*ITAG) Solyc07g005700.2.1 (e_value=1e-14) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00020129g0002.1 protein ; (*GB) gi|5091547|gb|AAD39576.1|AC007067_16 (e_value=7e-16) T10O24.16 [Arabidopsis thaliana];; (*SWP) sp|Q8VZQ5|NAT8_ARATH (e_value=1e-16) Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1;; (*TAIR) AT1G10540.1 (e_value=8e-18) | Symbols: ATNAT8, NAT8 | nucleobase-ascorbate transporter 8 | chr1:3475024-3477756 REVERSE LENGTH=539;; (*ITAG) Solyc05g006020.2.1 (e_value=1e-18) genomic_reference:SL2.40ch05 gene_region:754456-759784 transcript_region:SL2.40ch05:754456..759784+ go_terms:GO:0015229 functional_description:"Nucleobase ascorbate transporter (AHRD V1 **-* B9HJR9_POPTR); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0015229 NbS00032366g0005.1 protein NbS00017334g0007.1 protein NbS00025158g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=3e-15) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00029389g0004.1 protein NbS00001351g0004.1 protein NbS00015221g0001.1 protein NbS00015221g0002.1 protein NbS00010317g0004.1 protein ; (*GB) gi|297837097|ref|XP_002886430.1| (e_value=1e-12) hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT1G63160.1 (e_value=4e-14) | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333;; (*ITAG) Solyc08g080510.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:60951135-60955310 transcript_region:SL2.40ch08:60951135..60955310- go_terms:GO:0032183,GO:0019899 functional_description:"Replication factor C subunit 4 (AHRD V1 ***- B6TA83_MAIZE); contains Interpro domain(s) IPR013748 Replication factor C "; GO:0032183,GO:0019899 NbS00010317g0007.1 protein NbS00035543g0002.1 protein NbS00017231g0004.1 protein NbS00017231g0007.1 protein NbS00017231g0009.1 protein NbS00002310g0004.1 protein NbS00023607g0019.1 protein ; (*GB) gi|255566751|ref|XP_002524359.1| (e_value=1e-17) RNA binding protein, putative [Ricinus communis];; (*TAIR) AT4G17610.1 (e_value=9e-20) | Symbols: | tRNA/rRNA methyltransferase (SpoU) family protein | chr4:9805652-9814910 REVERSE LENGTH=1850;; (*ITAG) Solyc08g077850.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:58914158-58943344 transcript_region:SL2.40ch08:58914158..58943344+ go_terms:GO:0006396 functional_description:"tRNA/rRNA methyltransferase SpoU family protein (AHRD V1 *-*- Q54XF8_DICDI); contains Interpro domain(s) IPR001537 tRNA/rRNA methyltransferase, SpoU "; GO:0006396 NbS00023607g0008.1 protein NbS00033522g0001.1 protein NbS00030170g0004.1 protein NbS00030170g0007.1 protein NbS00029880g0001.1 protein ; (*GB) gi|350539019|ref|NP_001234370.1| (e_value=5e-17) FtsH protease-like [Solanum lycopersicum];; (*SWP) sp|Q8LQJ8|FTSH5_ORYSJ (e_value=1e-14) ATP-dependent zinc metalloprotease FTSH 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1;; (*TAIR) AT2G26140.1 (e_value=3e-14) | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-11135126 REVERSE LENGTH=717;; (*ITAG) Solyc11g069950.1.1 (e_value=9e-20) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:51629743-51639001 transcript_region:SL2.40ch11:51629743..51639001+ go_terms:GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 functional_description:"Cell division protease ftsH homolog (AHRD V1 **-- FTSH_RICPR); contains Interpro domain(s) IPR003960 ATPase, AAA-type, conserved site IPR005936 Peptidase M41, FtsH "; GO:0006508,GO:0016020,GO:0005524,GO:0017111,GO:0016021 NbS00015030g0007.1 protein NbS00022400g0003.1 protein ; (*GB) gi|40644190|emb|CAC95126.1| (e_value=1e-13) gag-pol polyprotein [Populus deltoides]; NbS00050718g0005.1 protein NbS00050718g0007.1 protein ; (*ITAG) Solyc01g007140.2.1 (e_value=2e-13) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbC26075452g0001.1 protein ; (*ITAG) Solyc11g073080.1.1 (e_value=6e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:53269357-53272788 transcript_region:SL2.40ch11:53269357..53272788+ go_terms:GO:0005634,GO:0003677 functional_description:"Methyl binding domain protein (AHRD V1 *-*- B9HPK6_POPTR); contains Interpro domain(s) IPR001739 Methyl-CpG DNA binding "; GO:0005634,GO:0003677 NbS00022226g0004.1 protein ; (*ITAG) Solyc03g020020.2.1 (e_value=3e-16) genomic_reference:SL2.40ch03 gene_region:6871020-6893846 transcript_region:SL2.40ch03:6871020..6893846- functional_description:"AT3G05680-like protein (Fragment) (AHRD V1 *-*- D6PPW0_9BRAS)"; NbS00007447g0011.1 protein NbS00001711g0006.1 protein NbS00001711g0010.1 protein NbS00016372g0009.1 protein NbS00021132g0103.1 protein NbS00021132g0105.1 protein NbS00040068g0005.1 protein NbS00020555g0007.1 protein NbS00027614g0003.1 protein NbS00000491g0004.1 protein NbS00000491g0006.1 protein NbS00038612g0002.1 protein NbS00002443g0213.1 protein NbS00002443g0206.1 protein NbS00002443g0210.1 protein NbC24133056g0002.1 protein ; (*GB) gi|224141133|ref|XP_002323929.1| (e_value=1e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=2e-33) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=1e-34) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=3e-52) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00048799g0001.1 protein NbS00019844g0006.1 protein NbS00050434g0004.1 protein ; (*GB) gi|224054408|ref|XP_002298245.1| (e_value=2e-56) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LIG0|Y3136_ARATH (e_value=1e-53) Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1;; (*TAIR) AT3G21360.1 (e_value=9e-55) | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr3:7522865-7524036 FORWARD LENGTH=330;; (*ITAG) Solyc03g121040.2.1 (e_value=4e-67) genomic_reference:SL2.40ch03 gene_region:63326457-63329185 transcript_region:SL2.40ch03:63326457..63329185+ go_terms:GO:0055114 functional_description:"Taurine catabolism dioxygenase TauD/TfdA family (AHRD V1 ***- C4AZM2_BURMA); contains Interpro domain(s) IPR003819 Taurine catabolism dioxygenase TauD/TfdA "; GO:0055114 NbS00048194g0003.1 protein NbS00038736g0003.1 protein NbS00003857g0001.1 protein NbC23361447g0002.1 protein ; (*GB) gi|225445472|ref|XP_002281953.1| (e_value=6e-20) PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Vitis vinifera];; (*SWP) sp|Q84MA3|PP345_ARATH (e_value=2e-20) Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=1;; (*TAIR) AT4G32430.1 (e_value=1e-21) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:15652982-15655273 FORWARD LENGTH=763;; (*ITAG) Solyc12g099620.1.1 (e_value=2e-31) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:65038732-65041017 transcript_region:SL2.40ch12:65038732..65041017- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LJ24_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003844g0013.1 protein NbS00001924g0009.1 protein NbS00020952g0005.1 protein NbS00020952g0008.1 protein NbS00041714g0001.1 protein ; (*GB) gi|224071021|ref|XP_002303333.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9C552|PUM23_ARATH (e_value=2e-19) Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1;; (*TAIR) AT1G72320.3 (e_value=1e-20) | Symbols: APUM23, PUM23 | pumilio 23 | chr1:27228984-27232514 REVERSE LENGTH=731;; (*ITAG) Solyc03g123640.2.1 (e_value=2e-59) genomic_reference:SL2.40ch03 gene_region:64487596-64494765 transcript_region:SL2.40ch03:64487596..64494765+ go_terms:GO:0005488,GO:0003723 functional_description:"Pumilio domain-containing protein c (AHRD V1 **-- B6K1Y8_SCHJY); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005488,GO:0003723 NbS00027390g0005.1 protein NbC24835624g0001.1 protein ; (*GB) gi|224118636|ref|XP_002331411.1| (e_value=2e-35) predicted protein [Populus trichocarpa];; (*SWP) sp|Q819L4|SPEA_BACCR (e_value=1e-16) Arginine decarboxylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speA PE=3 SV=1;; (*ITAG) Solyc07g016050.2.1 (e_value=4e-45) genomic_reference:SL2.40ch07 gene_region:6215259-6216379 transcript_region:SL2.40ch07:6215259..6216379+ go_terms:GO:0008923 functional_description:"Lysine decarboxylase (AHRD V1 **** Q8YMP6_ANASP); contains Interpro domain(s) IPR000310 Orn/Lys/Arg decarboxylase, major region "; GO:0008923 NbS00028419g0002.1 protein NbS00003709g0006.1 protein NbS00038547g0003.1 protein NbS00012645g0002.1 protein NbS00024669g0004.1 protein NbS00028054g0003.1 protein NbS00031513g0003.1 protein NbS00006474g0006.1 protein NbS00023041g0011.1 protein ; (*ITAG) Solyc04g053070.1.1 (e_value=8e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:50576554-50576883 transcript_region:SL2.40ch04:50576554..50576883- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010666 Zinc finger, GRF-type "; GO:0008270 NbS00023041g0010.1 protein NbS00030503g0003.1 protein NbS00030503g0004.1 protein NbS00024266g0005.1 protein ; (*GB) gi|255539380|ref|XP_002510755.1| (e_value=2e-103) o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis];; (*TAIR) AT1G76630.1 (e_value=7e-80) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1140;; (*ITAG) Solyc04g082980.1.1 (e_value=3e-79) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:64025349-64042827 transcript_region:SL2.40ch04:64025349..64042827+ go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *--- Q2UQ52_ASPOR); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00024266g0008.1 protein NbS00042802g0002.1 protein ; (*GB) gi|304304318|gb|ADM21465.1| (e_value=3e-15) alpha-dioxygenase 2 [Nicotiana attenuata];; (*TAIR) AT1G73680.2 (e_value=8e-13) | Symbols: ALPHA DOX2 | alpha dioxygenase | chr1:27704221-27707417 REVERSE LENGTH=640;; (*ITAG) Solyc03g119060.2.1 (e_value=2e-15) genomic_reference:SL2.40ch03 gene_region:61825456-61831120 transcript_region:SL2.40ch03:61825456..61831120+ go_terms:GO:0016702 functional_description:"Alpha-dioxygenase 2 (AHRD V1 **-- Q5WM33_SOLLC); contains Interpro domain(s) IPR002007 Haem peroxidase, animal "; GO:0016702 NbS00024213g0003.1 protein NbS00024213g0004.1 protein NbS00012769g0005.1 protein NbS00017691g0010.1 protein NbS00018512g0007.1 protein NbS00005278g0005.1 protein ; (*GB) gi|359493824|ref|XP_003634674.1| (e_value=3e-27) PREDICTED: probable aminotransferase TAT2 isoform 2 [Vitis vinifera];; (*SWP) sp|Q9FN30|TAT2_ARATH (e_value=3e-25) Probable aminotransferase TAT2 OS=Arabidopsis thaliana GN=At5g53970 PE=2 SV=1;; (*TAIR) AT5G53970.1 (e_value=3e-26) | Symbols: | Tyrosine transaminase family protein | chr5:21910676-21912594 FORWARD LENGTH=414;; (*ITAG) Solyc12g088000.1.1 (e_value=7e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:61934129-61939741 transcript_region:SL2.40ch12:61934129..61939741+ go_terms:GO:0006519,GO:0009058,GO:0030170 functional_description:"Aminotransferase family protein (AHRD V1 ***- B9HZQ9_POPTR); contains Interpro domain(s) IPR005958 Tyrosine/nicotianamine aminotransferase "; GO:0006519,GO:0009058,GO:0030170 NbS00003466g0005.1 protein NbS00008041g0011.1 protein ; (*GB) gi|147826474|emb|CAN72806.1| (e_value=6e-15) hypothetical protein VITISV_035309 [Vitis vinifera];; (*ITAG) Solyc01g107900.2.1 (e_value=5e-33) genomic_reference:SL2.40ch01 gene_region:87046163-87051415 transcript_region:SL2.40ch01:87046163..87051415- functional_description:"Acyltransferase WS/DGAT/MGAT family protein (AHRD V1 **-- A7NLM3_ROSCS); contains Interpro domain(s) IPR009721 Protein of unknown function DUF1298 "; NbS00008041g0007.1 protein NbS00008041g0008.1 protein NbS00035148g0003.1 protein NbS00033137g0002.1 protein NbS00001786g0203.1 protein NbS00001786g0206.1 protein NbS00014236g0002.1 protein NbS00019611g0006.1 protein NbS00033213g0005.1 protein NbS00033213g0006.1 protein NbS00015065g0003.1 protein NbS00038048g0002.1 protein NbS00016733g0001.1 protein ; (*GB) gi|224064547|ref|XP_002301513.1| (e_value=2e-36) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62390.1 (e_value=3e-35) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=8e-42) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00040502g0003.1 protein NbS00016726g0002.1 protein NbS00058707g0002.1 protein ; (*ITAG) Solyc01g108640.1.1 (e_value=7e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:87644015-87645151 transcript_region:SL2.40ch01:87644015..87645151+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At1g28600 (AHRD V1 ***- GDL9_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00026210g0006.1 protein ; (*GB) gi|359486795|ref|XP_002278568.2| (e_value=1e-20) PREDICTED: AP3-complex subunit beta-A-like [Vitis vinifera];; (*SWP) sp|Q9M2T1|AP3BA_ARATH (e_value=5e-16) AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2;; (*TAIR) AT3G55480.1 (e_value=3e-17) | Symbols: PAT2 | protein affected trafficking 2 | chr3:20566372-20570629 REVERSE LENGTH=987;; (*ITAG) Solyc06g043030.2.1 (e_value=5e-32) genomic_reference:SL2.40ch06 gene_region:25908427-25918673 transcript_region:SL2.40ch06:25908427..25918673+ go_terms:GO:0005215,GO:0019903 functional_description:"AP-1 complex subunit beta-1 (AHRD V1 *-*- C0NNW5_AJECG); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0005215,GO:0019903 NbS00026210g0008.1 protein ; (*GB) gi|147855630|emb|CAN79165.1| (e_value=3e-25) hypothetical protein VITISV_019247 [Vitis vinifera];; (*SWP) sp|Q949V6|ARI1_ARATH (e_value=1e-25) Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1;; (*TAIR) AT4G34370.1 (e_value=7e-27) | Symbols: ATARI1, ARI1 | RING/U-box superfamily protein | chr4:16434547-16437037 FORWARD LENGTH=597;; (*ITAG) Solyc12g089000.1.1 (e_value=3e-41) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62612008-62616194 transcript_region:SL2.40ch12:62612008..62616194- go_terms:GO:0008270 functional_description:"Ariadne-like ubiquitin ligase (AHRD V1 **-- D3AZ84_POLPA); contains Interpro domain(s) IPR002867 Zinc finger, C6HC-type "; GO:0008270 NbS00026210g0010.1 protein NbS00028351g0011.1 protein NbS00021492g0002.1 protein NbS00037253g0005.1 protein NbS00025740g0002.1 protein NbS00010385g0009.1 protein NbS00037043g0015.1 protein NbS00037043g0008.1 protein NbS00011083g0003.1 protein ; (*GB) gi|17644112|gb|AAK95390.1| (e_value=2e-42) ribosomal protein L2 [Solanum lycopersicum];; (*TAIR) AT2G44065.2 (e_value=8e-15) | Symbols: | Ribosomal protein L2 family | chr2:18228860-18230368 FORWARD LENGTH=214;; (*ITAG) Solyc08g075410.2.1 (e_value=5e-45) genomic_reference:SL2.40ch08 gene_region:56714437-56715532 transcript_region:SL2.40ch08:56714437..56715532- go_terms:GO:0032183 functional_description:"50S ribosomal protein L2 (AHRD V1 *-*- D3P934_DEFDS); contains Interpro domain(s) IPR005880 Ribosomal protein L2, bacterial-type "; GO:0032183 NbS00011083g0004.1 protein NbS00011083g0005.1 protein ; (*GB) gi|225427595|ref|XP_002270679.1| (e_value=2e-59) PREDICTED: uncharacterized zinc finger CCHC domain-containing protein At4g19190 [Vitis vinifera];; (*SWP) sp|Q8VZ67|Y4919_ARATH (e_value=5e-51) Uncharacterized zinc finger CCHC domain-containing protein At4g19190 OS=Arabidopsis thaliana GN=At4g19190 PE=2 SV=1;; (*TAIR) AT4G19190.1 (e_value=3e-52) | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:10493323-10495969 FORWARD LENGTH=595;; (*ITAG) Solyc08g075420.2.1 (e_value=4e-67) genomic_reference:SL2.40ch08 gene_region:56716267-56722530 transcript_region:SL2.40ch08:56716267..56722530- functional_description:"Uncharacterized zinc finger CCHC domain-containing protein At4g19190 (AHRD V1 *--- Y4919_ARATH); contains Interpro domain(s) IPR019339 CBF1-interacting co-repressor CIR, N-terminal "; NbS00035645g0003.1 protein NbS00028447g0002.1 protein NbS00028447g0104.1 protein NbS00015329g0007.1 protein NbS00015062g0003.1 protein NbS00022094g0002.1 protein NbS00022094g0004.1 protein ; (*GB) gi|388522403|gb|AFK49263.1| (e_value=4e-14) unknown [Lotus japonicus];; (*TAIR) AT4G11570.2 (e_value=5e-14) | Symbols: | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:7004743-7005864 FORWARD LENGTH=373;; (*ITAG) Solyc08g081030.1.1 (e_value=7e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:61325427-61326569 transcript_region:SL2.40ch08:61325427..61326569- go_terms:GO:0016787,GO:0008152 functional_description:"HAD-superfamily hydrolase subfamily IA (AHRD V1 *-*- D9WQP9_STRHY); contains Interpro domain(s) IPR005834 Haloacid dehalogenase-like hydrolase "; GO:0016787,GO:0008152 NbS00003054g0009.1 protein NbS00026989g0011.1 protein NbS00001992g0003.1 protein NbS00022518g0002.1 protein NbS00011959g0006.1 protein NbS00011959g0009.1 protein NbS00031199g0004.1 protein NbS00036415g0001.1 protein NbS00012224g0005.1 protein NbS00014755g0003.1 protein NbS00014755g0004.1 protein NbS00061984g0003.1 protein ; (*ITAG) Solyc03g111400.1.1 (e_value=3e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:56050645-56052243 transcript_region:SL2.40ch03:56050645..56052243+ go_terms:GO:0005345,GO:0015211 functional_description:"Xanthine/uracil permease family protein (AHRD V1 ***- D7L9S9_ARALY); contains Interpro domain(s) IPR006043 Xanthine/uracil/vitamin C permease "; GO:0005345,GO:0015211 NbS00001936g0006.1 protein NbS00017990g0014.1 protein NbS00017990g0008.1 protein NbS00017990g0009.1 protein NbS00012288g0002.1 protein ; (*ITAG) Solyc07g064210.2.1 (e_value=2e-13) genomic_reference:SL2.40ch07 gene_region:63673061-63674014 transcript_region:SL2.40ch07:63673061..63674014+ go_terms:GO:0008289,GO:0005515 functional_description:"2S albumin seed storage protein (Fragment) (AHRD V1 -*-- Q7Y1C2_JUGNI); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor "; GO:0008289,GO:0005515 NbS00037949g0005.1 protein ; (*GB) gi|225441549|ref|XP_002281113.1| (e_value=3e-21) PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Vitis vinifera];; (*SWP) sp|Q9M2F9|RH52_ARATH (e_value=7e-21) DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1;; (*TAIR) AT3G58570.1 (e_value=5e-22) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21657099-21660352 FORWARD LENGTH=646;; (*ITAG) Solyc01g005960.2.1 (e_value=2e-24) genomic_reference:SL2.40ch01 gene_region:625583-632996 transcript_region:SL2.40ch01:625583..632996+ go_terms:GO:0008026,GO:0005524 functional_description:"ATP dependent RNA helicase (AHRD V1 ***- B3LKV6_YEAS1); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524 NbS00020030g0006.1 protein NbS00029681g0003.1 protein NbC24366242g0001.1 protein ; (*GB) gi|238757463|ref|ZP_04618648.1| (e_value=4e-15) Inositol phosphate phosphatase sopB [Yersinia aldovae ATCC 35236];; (*SWP) sp|Q9AH19|SOPB_SALDZ (e_value=2e-16) Inositol phosphate phosphatase sopB (Fragment) OS=Salmonella diarizonae GN=sopB PE=3 SV=1; NbS00016073g0002.1 protein NbS00052298g0001.1 protein ; (*GB) gi|255584648|ref|XP_002533047.1| (e_value=3e-22) hypothetical protein RCOM_0068670 [Ricinus communis];; (*ITAG) Solyc03g121850.2.1 (e_value=2e-37) genomic_reference:SL2.40ch03 gene_region:63938734-63953260 transcript_region:SL2.40ch03:63938734..63953260+ functional_description:"Aleurone layer morphogenesis protein (AHRD V1 *-*- Q7XZV4_ORYSJ)"; NbS00024219g0001.1 protein NbS00027239g0005.1 protein NbS00003880g0015.1 protein NbS00003880g0119.1 protein NbS00026585g0002.1 protein ; (*GB) gi|359492305|ref|XP_002265283.2| (e_value=4e-59) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=3e-51) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=2e-52) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=1e-63) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00042488g0003.1 protein NbS00010097g0012.1 protein NbS00010097g0008.1 protein NbS00027755g0005.1 protein ; (*ITAG) Solyc08g082010.2.1 (e_value=3e-15) genomic_reference:SL2.40ch08 gene_region:62095443-62099923 transcript_region:SL2.40ch08:62095443..62099923+ go_terms:GO:0005515 functional_description:"Myosin heavy chain-like protein (AHRD V1 *-*- Q9FJ35_ARATH); contains Interpro domain(s) IPR009053 Prefoldin "; GO:0005515 NbS00027755g0006.1 protein NbS00027755g0007.1 protein ; (*GB) gi|356506136|ref|XP_003521843.1| (e_value=1e-30) PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max];; (*SWP) sp|Q9C7A2|Y3236_ARATH (e_value=7e-19) Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1;; (*TAIR) AT2G31820.1 (e_value=4e-29) | Symbols: | Ankyrin repeat family protein | chr2:13530350-13532562 FORWARD LENGTH=662;; (*ITAG) Solyc12g019060.1.1 (e_value=6e-42) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:9071679-9076116 transcript_region:SL2.40ch12:9071679..9076116+ functional_description:"Ankyrin repeat domain protein (AHRD V1 *--- Q4EBT3_9RICK); contains Interpro domain(s) IPR002110 Ankyrin "; NbS00006168g0003.1 protein NbS00011131g0006.1 protein NbS00050332g0005.1 protein NbS00025302g0002.1 protein NbS00025302g0003.1 protein ; (*GB) gi|225431423|ref|XP_002280019.1| (e_value=8e-91) PREDICTED: uncharacterized protein LOC100262676 [Vitis vinifera];; (*TAIR) AT4G35560.1 (e_value=2e-75) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr4:16881562-16886878 FORWARD LENGTH=1049;; (*ITAG) Solyc02g082690.2.1 (e_value=1e-143) genomic_reference:SL2.40ch02 gene_region:40916781-40931957 transcript_region:SL2.40ch02:40916781..40931957+ functional_description:"Syntaxin binding protein 5 (Tomosyn) (AHRD V1 *--- Q14DD4_HUMAN); contains Interpro domain(s) IPR011046 WD40 repeat-like "; NbS00011039g0005.1 protein NbS00011039g0007.1 protein NbS00012579g0002.1 protein NbS00012579g0005.1 protein NbS00012579g0112.1 protein NbS00012579g0114.1 protein NbS00012579g0119.1 protein NbS00012579g0120.1 protein NbS00010424g0003.1 protein NbS00010564g0004.1 protein NbS00046116g0001.1 protein NbS00003949g0008.1 protein NbS00011135g0004.1 protein NbS00016633g0103.1 protein NbS00016633g0202.1 protein NbS00023342g0002.1 protein NbS00031152g0002.1 protein NbS00031152g0003.1 protein NbC25018256g0002.1 protein ; (*GB) gi|379987676|gb|AFD22618.1| (e_value=3e-14) dicer-like 1 protein, partial [Nicotiana attenuata];; (*TAIR) AT1G01040.1 (e_value=6e-13) | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60, ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD LENGTH=1909;; (*ITAG) Solyc10g005130.2.1 (e_value=2e-14) genomic_reference:SL2.40ch10 gene_region:111879-125251 transcript_region:SL2.40ch10:111879..125251+ go_terms:GO:0005515,GO:0003725 functional_description:"Ribonuclease 3-like protein 3 (AHRD V1 *-*- RTL3_ORYSJ); contains Interpro domain(s) IPR005034 Dicer double-stranded RNA-binding fold "; GO:0005515,GO:0003725 NbS00039099g0004.1 protein ; (*GB) gi|83778371|gb|ABC47126.1| (e_value=2e-20) expansin-like protein precursor [Solanum tuberosum];; (*SWP) sp|Q9LZT4|EXLA1_ARATH (e_value=1e-13) Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1;; (*TAIR) AT4G38400.1 (e_value=9e-15) | Symbols: ATEXLA2, EXPL2, ATEXPL2, ATHEXP BETA 2.2, EXLA2 | expansin-like A2 | chr4:17978675-17979665 REVERSE LENGTH=265;; (*ITAG) Solyc01g112000.2.1 (e_value=6e-21) genomic_reference:SL2.40ch01 gene_region:89896494-89898383 transcript_region:SL2.40ch01:89896494..89898383+ go_terms:GO:0005576 functional_description:"Expansin-like protein (AHRD V1 ***- A7X331_SOLLC); contains Interpro domain(s) IPR007112 Expansin 45, endoglucanase-like IPR007117 Pollen allergen/expansin, C-terminal "; GO:0005576 NbS00035555g0004.1 protein NbS00013050g0003.1 protein NbS00012956g0013.1 protein NbS00012956g0014.1 protein NbS00012956g0007.1 protein NbS00012956g0010.1 protein NbS00042109g0013.1 protein NbS00042109g0014.1 protein ; (*GB) gi|226532215|ref|NP_001140773.1| (e_value=3e-31) uncharacterized protein LOC100272848 [Zea mays];; (*SWP) sp|Q5HBX4|CLPX_EHRRW (e_value=2e-24) ATP-dependent Clp protease ATP-binding subunit ClpX OS=Ehrlichia ruminantium (strain Welgevonden) GN=clpX PE=3 SV=1;; (*TAIR) AT5G53350.1 (e_value=3e-31) | Symbols: CLPX | CLP protease regulatory subunit X | chr5:21644060-21647503 FORWARD LENGTH=579;; (*ITAG) Solyc06g063410.2.1 (e_value=7e-33) genomic_reference:SL2.40ch06 gene_region:36465199-36475111 transcript_region:SL2.40ch06:36465199..36475111- go_terms:GO:0005524,GO:0017111,GO:0006457 functional_description:"ATP-dependent Clp protease ATP-binding subunit clpX (AHRD V1 ***- B6SSC5_MAIZE); contains Interpro domain(s) IPR004487 ClpX, ATPase regulatory subunit "; GO:0005524,GO:0017111,GO:0006457 NbS00042109g0007.1 protein NbS00042109g0008.1 protein NbS00025185g0005.1 protein NbC24504144g0001.1 protein ; (*ITAG) Solyc02g072480.2.1 (e_value=8e-29) genomic_reference:SL2.40ch02 gene_region:36246519-36250736 transcript_region:SL2.40ch02:36246519..36250736+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00014088g0004.1 protein NbS00014088g0005.1 protein ; (*GB) gi|89111299|dbj|BAE80324.1| (e_value=8e-20) cyclin D3-1 [Camellia sinensis];; (*SWP) sp|P42753|CCD31_ARATH (e_value=7e-19) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=5e-20) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc04g078470.2.1 (e_value=1e-21) genomic_reference:SL2.40ch04 gene_region:60795941-60797791 transcript_region:SL2.40ch04:60795941..60797791- go_terms:GO:0004723 functional_description:"Cyclin D3-1 (AHRD V1 ***- Q2ABE7_CAMSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004723 NbS00031050g0011.1 protein NbS00037824g0002.1 protein NbS00037824g0003.1 protein NbS00019766g0005.1 protein NbS00037870g0004.1 protein NbS00001701g0104.1 protein NbS00001701g0105.1 protein NbS00019199g0002.1 protein NbC23653829g0001.1 protein ; (*GB) gi|359488210|ref|XP_003633720.1| (e_value=1e-33) PREDICTED: histone deacetylase 19-like [Vitis vinifera];; (*SWP) sp|O22446|HDA19_ARATH (e_value=2e-32) Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2;; (*TAIR) AT4G38130.1 (e_value=2e-33) | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 | histone deacetylase 1 | chr4:17896493-17899057 REVERSE LENGTH=501;; (*ITAG) Solyc09g091440.2.1 (e_value=2e-39) genomic_reference:SL2.40ch09 gene_region:66071268-66077194 transcript_region:SL2.40ch09:66071268..66077194- go_terms:GO:0003714 functional_description:"Histone deacetylase (AHRD V1 ***- B9MZ37_POPTR); contains Interpro domain(s) IPR003084 Histone deacetylase "; GO:0003714 NbS00004565g0003.1 protein ; (*ITAG) Solyc04g008530.1.1 (e_value=2e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:2154141-2155727 transcript_region:SL2.40ch04:2154141..2155727+ functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein expressed (AHRD V1 *-*- Q2R2A3_ORYSJ); contains Interpro domain(s) IPR002083 MATH "; NbS00004565g0108.1 protein NbS00009837g0003.1 protein NbS00016153g0003.1 protein NbS00016153g0005.1 protein NbS00016153g0104.1 protein NbS00037116g0007.1 protein NbS00003259g0113.1 protein NbS00003259g0110.1 protein NbS00009478g0005.1 protein NbS00024424g0004.1 protein NbS00037589g0008.1 protein NbS00042878g0002.1 protein NbS00024194g0001.1 protein NbS00024194g0002.1 protein NbS00035400g0004.1 protein NbS00027220g0006.1 protein NbS00027220g0009.1 protein NbS00040598g0004.1 protein ; (*GB) gi|388514653|gb|AFK45388.1| (e_value=1e-21) unknown [Lotus japonicus];; (*TAIR) AT4G39460.2 (e_value=5e-23) | Symbols: SAMC1 | S-adenosylmethionine carrier 1 | chr4:18356093-18358596 REVERSE LENGTH=325;; (*ITAG) Solyc12g056660.1.1 (e_value=9e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:48016818-48021020 transcript_region:SL2.40ch12:48016818..48021020- go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial carrier C12B10.09 (AHRD V1 ***- B6TYC7_MAIZE); contains Interpro domain(s) IPR002067 Mitochondrial carrier protein "; GO:0016020,GO:0005743 NbS00028510g0005.1 protein NbS00028510g0008.1 protein NbS00055180g0003.1 protein NbS00006681g0005.1 protein NbS00006681g0006.1 protein ; (*ITAG) Solyc08g075700.2.1 (e_value=2e-14) genomic_reference:SL2.40ch08 gene_region:56989912-56992165 transcript_region:SL2.40ch08:56989912..56992165- go_terms:GO:0003735 functional_description:"60S ribosomal protein L13 (AHRD V1 ***- Q3HRY7_SOLTU); contains Interpro domain(s) IPR001380 Ribosomal protein L13e "; GO:0003735 NbS00052502g0001.1 protein ; (*TAIR) AT5G52360.1 (e_value=4e-15) | Symbols: ADF10 | actin depolymerizing factor 10 | chr5:21258157-21259229 REVERSE LENGTH=137;; (*ITAG) Solyc06g035980.2.1 (e_value=2e-15) genomic_reference:SL2.40ch06 gene_region:22031465-22032402 transcript_region:SL2.40ch06:22031465..22032402+ go_terms:GO:0051015 functional_description:"Actin depolymerizing factor 10 (AHRD V1 **** B9I489_POPTR); contains Interpro domain(s) IPR002108 Actin-binding, cofilin/tropomyosin type "; GO:0051015 NbS00022794g0006.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-16) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00018319g0006.1 protein NbS00018319g0010.1 protein ; (*ITAG) Solyc12g044790.1.1 (e_value=9e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:45540588-45541745 transcript_region:SL2.40ch12:45540588..45541745+ functional_description:"F-box family protein (AHRD V1 *-*- D7LXD8_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00028907g0001.1 protein NbS00028149g0009.1 protein NbS00012040g0008.1 protein NbS00029317g0007.1 protein NbS00020680g0002.1 protein NbS00020680g0003.1 protein NbS00020680g0005.1 protein ; (*TAIR) AT2G36670.2 (e_value=9e-15) | Symbols: | Eukaryotic aspartyl protease family protein | chr2:15364949-15368016 REVERSE LENGTH=507;; (*ITAG) Solyc09g008600.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:2069210-2077261 transcript_region:SL2.40ch09:2069210..2077261+ go_terms:GO:0005515 functional_description:"Aspartyl protease family protein (AHRD V1 **-- D7LJ61_ARALY); contains Interpro domain(s) IPR001461 Peptidase A1 "; GO:0005515 NbS00043570g0003.1 protein NbS00043570g0004.1 protein NbS00043570g0005.1 protein NbS00006593g0004.1 protein NbS00006593g0104.1 protein NbS00041775g0002.1 protein NbS00041775g0003.1 protein ; (*GB) gi|124361129|gb|ABN09101.1| (e_value=2e-21) Ribonuclease H [Medicago truncatula];; (*ITAG) Solyc05g039970.1.1 (e_value=7e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00051631g0001.1 protein NbS00005640g0001.1 protein NbS00000383g0008.1 protein ; (*GB) gi|297739499|emb|CBI29681.3| (e_value=2e-16) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc01g103230.2.1 (e_value=5e-33) genomic_reference:SL2.40ch01 gene_region:83638757-83653587 transcript_region:SL2.40ch01:83638757..83653587+ go_terms:GO:0008422 functional_description:"Non-lysosomal glucosylceramidase (AHRD V1 ***- B9SS77_RICCO); contains Interpro domain(s) IPR014551 Beta-glucosidase, GBA2 type "; GO:0008422 NbS00006173g0012.1 protein NbS00006173g0014.1 protein NbS00006173g0009.1 protein ; (*GB) gi|183240722|gb|ACC61147.1| (e_value=1e-40) ClpP [Agrostemma githago];; (*SWP) sp|P12210|CLPP_TOBAC (e_value=4e-42) ATP-dependent Clp protease proteolytic subunit OS=Nicotiana tabacum GN=clpP PE=2 SV=1;; (*ITAG) ATCG00670.1 (e_value=4e-36) | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | chrC:69910-71882 REVERSE LENGTH=196;; (*ITAG) Solyc01g007490.2.1 (e_value=2e-38) genomic_reference:SL2.40ch01 gene_region:1867188-1869330 transcript_region:SL2.40ch01:1867188..1869330- go_terms:GO:0006508 functional_description:"ATP-dependent Clp protease proteolytic subunit (AHRD V1 ***- D3WCC1_NEROL); contains Interpro domain(s) IPR001907 Peptidase S14, ClpP "; GO:0006508 NbS00027334g0006.1 protein NbS00027334g0007.1 protein NbS00030442g0002.1 protein NbS00021527g0004.1 protein NbS00001057g0004.1 protein NbS00003728g0007.1 protein ; (*GB) gi|79512687|ref|NP_196834.3| (e_value=2e-37) ADP-ribosylation factor GTPase-activating protein AGD3 [Arabidopsis thaliana];; (*SWP) sp|Q5W7F2|AGD3_ARATH (e_value=6e-39) ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1;; (*TAIR) AT5G13300.1 (e_value=5e-40) | Symbols: SFC, VAN3, AGD3 | ARF GTPase-activating protein | chr5:4255923-4262018 REVERSE LENGTH=827;; (*ITAG) Solyc12g042180.1.1 (e_value=4e-60) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:42664588-42670772 transcript_region:SL2.40ch12:42664588..42670772- go_terms:GO:0005737 functional_description:"Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 (AHRD V1 **-- ACAP3_HUMAN); contains Interpro domain(s) IPR004148 BAR "; GO:0005737 NbS00000504g0003.1 protein NbS00005939g0106.1 protein NbS00035776g0006.1 protein NbS00035776g0007.1 protein NbS00003516g0003.1 protein NbS00052807g0003.1 protein ; (*GB) gi|365222924|gb|AEW69814.1| (e_value=3e-15) Hop-interacting protein THI115 [Solanum lycopersicum];; (*ITAG) Solyc10g044960.1.1 (e_value=6e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:24529174-24537734 transcript_region:SL2.40ch10:24529174..24537734+ functional_description:"ENT domain containing protein (AHRD V1 ***- B6THJ4_MAIZE); contains Interpro domain(s) IPR005491 ENT "; NbS00025194g0004.1 protein NbS00025194g0005.1 protein NbS00025194g0008.1 protein NbS00050652g0002.1 protein ; (*GB) gi|297733786|emb|CBI15033.3| (e_value=1e-37) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9M3G7|ATM_ARATH (e_value=3e-31) Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana GN=ATM PE=2 SV=1;; (*TAIR) AT3G48190.1 (e_value=2e-32) | Symbols: ATM, ATATM | ataxia-telangiectasia mutated | chr3:17797628-17828361 FORWARD LENGTH=3845;; (*ITAG) Solyc03g112950.2.1 (e_value=3e-61) genomic_reference:SL2.40ch03 gene_region:57309377-57340774 transcript_region:SL2.40ch03:57309377..57340774+ go_terms:GO:0016773 functional_description:"Serine/threonine-protein kinase (AHRD V1 ***- D2V0W7_NAEGR); contains Interpro domain(s) IPR015519 Ataxia-Telangiectasia Mutated "; GO:0016773 NbS00025854g0003.1 protein NbS00048387g0004.1 protein NbS00034984g0011.1 protein NbS00034984g0013.1 protein NbS00021176g0003.1 protein ; (*GB) gi|225433752|ref|XP_002267641.1| (e_value=3e-17) PREDICTED: 2,3-dimethylmalate lyase [Vitis vinifera];; (*TAIR) AT2G43180.4 (e_value=8e-15) | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953832-17955774 REVERSE LENGTH=466;; (*ITAG) Solyc05g056270.2.1 (e_value=6e-52) genomic_reference:SL2.40ch05 gene_region:64763836-64771346 transcript_region:SL2.40ch05:64763836..64771346+ go_terms:GO:0008152,GO:0003824 functional_description:"Isocitrate lyase (AHRD V1 *-*- Q2TWG5_ASPOR); contains Interpro domain(s) IPR000918 Isocitrate lyase and phosphorylmutase "; GO:0008152,GO:0003824 NbS00044929g0002.1 protein NbS00005981g0109.1 protein NbS00057417g0010.1 protein ; (*ITAG) Solyc12g006030.1.1 (e_value=5e-14) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:627271-629494 transcript_region:SL2.40ch12:627271..629494- go_terms:GO:0032259,GO:0008168 functional_description:"Methyltransferase like 5 (AHRD V1 ***- Q5XJ53_DANRE); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0032259,GO:0008168 NbS00025043g0005.1 protein NbS00000610g0013.1 protein NbS00000610g0008.1 protein NbS00000610g0009.1 protein ; (*GB) gi|357435993|ref|XP_003588272.1| (e_value=5e-24) hypothetical protein MTR_1g005130 [Medicago truncatula]; NbC25260144g0001.1 protein NbS00036286g0001.1 protein NbS00057495g0001.1 protein NbS00050101g0005.1 protein NbS00050101g0006.1 protein NbS00050101g0007.1 protein NbS00035112g0003.1 protein NbS00012310g0009.1 protein NbS00010590g0104.1 protein NbS00035560g0002.1 protein NbS00001336g0015.1 protein NbS00012181g0004.1 protein NbS00000300g0107.1 protein NbS00000300g0108.1 protein NbS00000300g0110.1 protein NbS00001955g0004.1 protein NbS00019505g0004.1 protein NbS00047425g0002.1 protein NbS00052376g0003.1 protein NbS00052376g0004.1 protein NbS00047988g0001.1 protein ; (*GB) gi|224141263|ref|XP_002323994.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*TAIR) AT3G27470.2 (e_value=1e-43) | Symbols: | Protein of unknown function (DUF707) | chr3:10163947-10166550 FORWARD LENGTH=398;; (*ITAG) Solyc02g093480.2.1 (e_value=1e-59) genomic_reference:SL2.40ch02 gene_region:48912692-48918328 transcript_region:SL2.40ch02:48912692..48918328- functional_description:"Lysine ketoglutarate reductase trans-splicing related 1 (AHRD V1 ***- B6TPP1_MAIZE); contains Interpro domain(s) IPR007877 Protein of unknown function DUF707 "; NbS00051783g0003.1 protein NbS00045677g0002.1 protein NbS00019597g0009.1 protein NbS00009265g0002.1 protein NbS00009265g0004.1 protein NbS00009265g0115.1 protein NbS00061254g0002.1 protein NbC26218756g0001.1 protein NbS00019399g0008.1 protein NbS00019399g0009.1 protein NbS00044412g0004.1 protein NbS00062225g0003.1 protein NbS00020083g0004.1 protein NbS00036119g0004.1 protein NbS00002780g0008.1 protein NbS00002780g0101.1 protein NbS00002780g0103.1 protein NbC24475291g0001.1 protein ; (*GB) gi|296086456|emb|CBI32045.3| (e_value=1e-69) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q0WVK7|PPR12_ARATH (e_value=1e-56) Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1;; (*TAIR) AT1G05670.2 (e_value=8e-58) | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:1698574-1700799 REVERSE LENGTH=741;; (*ITAG) Solyc03g118280.1.1 (e_value=3e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:61242843-61245950 transcript_region:SL2.40ch03:61242843..61245950- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MT42_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00057673g0002.1 protein ; (*GB) gi|75331994|sp|Q949G3.1|PDR1_NICPL (e_value=2e-18) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NpPDR1;; (*SWP) sp|Q949G3|PDR1_NICPL (e_value=7e-20) Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1;; (*TAIR) AT1G15520.1 (e_value=1e-16) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=1e-21) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00057673g0004.1 protein ; (*GB) gi|75326590|sp|Q76CU2.1|PDR1_TOBAC (e_value=4e-80) RecName: Full=Pleiotropic drug resistance protein 1; AltName: Full=NtPDR1;; (*SWP) sp|Q76CU2|PDR1_TOBAC (e_value=1e-81) Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1;; (*TAIR) AT1G15520.1 (e_value=6e-63) | Symbols: PDR12, ATPDR12, ABCG40, ATABCG40 | pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423;; (*ITAG) Solyc09g091660.2.1 (e_value=2e-82) genomic_reference:SL2.40ch09 gene_region:66255162-66263653 transcript_region:SL2.40ch09:66255162..66263653+ go_terms:GO:0042626 functional_description:"ABC transporter G family member 40 (AHRD V1 ***- AB40G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00006010g0007.1 protein NbS00009056g0004.1 protein NbS00008181g0012.1 protein NbS00041744g0006.1 protein NbS00043892g0002.1 protein NbC25222233g0001.1 protein NbS00024840g0004.1 protein NbS00024840g0006.1 protein ; (*GB) gi|359483488|ref|XP_002273710.2| (e_value=2e-95) PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera];; (*SWP) sp|Q9LIQ7|PP252_ARATH (e_value=2e-42) Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1;; (*TAIR) AT3G24000.1 (e_value=2e-43) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:8672774-8674881 FORWARD LENGTH=665;; (*ITAG) Solyc04g051480.1.1 (e_value=2e-139) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:49752113-49754857 transcript_region:SL2.40ch04:49752113..49754857- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MHD4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00003092g0011.1 protein NbS00003092g0012.1 protein NbS00003092g0009.1 protein ; (*GB) gi|148907669|gb|ABR16963.1| (e_value=3e-35) unknown [Picea sitchensis];; (*SWP) sp|P47047|MTR4_YEAST (e_value=7e-29) ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1;; (*TAIR) AT1G59760.1 (e_value=4e-37) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=3e-36) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00024634g0002.1 protein ; (*ITAG) Solyc09g008330.2.1 (e_value=3e-23) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00017146g0005.1 protein ; (*ITAG) Solyc07g005070.1.1 (e_value=4e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:110963-112153 transcript_region:SL2.40ch07:110963..112153- functional_description:"Collagen alpha-1(IV) chain (AHRD V1 *-*- CO4A1_CAEEL)"; NbS00017146g0007.1 protein NbS00016884g0001.1 protein NbS00040365g0004.1 protein NbS00040365g0006.1 protein NbS00044477g0004.1 protein ; (*GB) gi|255543481|ref|XP_002512803.1| (e_value=1e-34) dead box ATP-dependent RNA helicase, putative [Ricinus communis];; (*TAIR) AT3G02060.2 (e_value=4e-35) | Symbols: | DEAD/DEAH box helicase, putative | chr3:354412-358319 FORWARD LENGTH=822;; (*ITAG) Solyc02g094590.2.1 (e_value=2e-40) genomic_reference:SL2.40ch02 gene_region:49704269-49721577 transcript_region:SL2.40ch02:49704269..49721577+ go_terms:GO:0008026,GO:0005524,GO:0006355,GO:0006281 functional_description:"Transcription-repair coupling factor (AHRD V1 ***- B4WRL4_9SYNE); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal "; GO:0008026,GO:0005524,GO:0006355,GO:0006281 NbS00018618g0001.1 protein NbS00026742g0004.1 protein NbS00030077g0003.1 protein NbS00005081g0004.1 protein NbS00045393g0002.1 protein ; (*GB) gi|374095605|gb|AEY85030.1| (e_value=2e-27) putative 5-oxoprolinase [Camellia sinensis];; (*SWP) sp|Q9FIZ7|OPLA_ARATH (e_value=1e-27) 5-oxoprolinase OS=Arabidopsis thaliana GN=OXP1 PE=2 SV=1;; (*TAIR) AT5G37830.1 (e_value=8e-29) | Symbols: OXP1 | oxoprolinase 1 | chr5:15056635-15060525 REVERSE LENGTH=1266;; (*ITAG) Solyc09g010560.1.1 (e_value=2e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:3920997-3924803 transcript_region:SL2.40ch09:3920997..3924803- go_terms:GO:0017168 functional_description:"5-oxoprolinase (ATP-hydrolyzing) (AHRD V1 **** Q1JWC8_DESAC); contains Interpro domain(s) IPR003692 Hydantoinase B/oxoprolinase "; GO:0017168 NbS00026234g0001.1 protein ; (*ITAG) Solyc01g049640.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:40678900-40679439 transcript_region:SL2.40ch01:40678900..40679439+ functional_description:"Polynucleotidyl transferase Ribonuclease H fold (AHRD V1 ***- A2Q617_MEDTR); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; NbS00029174g0003.1 protein ; (*GB) gi|359490548|ref|XP_002267012.2| (e_value=5e-27) PREDICTED: uncharacterized protein LOC100267290 [Vitis vinifera];; (*TAIR) AT1G65780.1 (e_value=6e-13) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:24462958-24466888 REVERSE LENGTH=1065;; (*ITAG) Solyc03g031900.1.1 (e_value=4e-41) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:8645530-8649794 transcript_region:SL2.40ch03:8645530..8649794- functional_description:"Helicase sen1 (AHRD V1 *--- A8NRR5_COPC7)"; NbS00062138g0003.1 protein NbS00036214g0101.1 protein NbS00036214g0106.1 protein NbS00036214g0107.1 protein NbS00012997g0013.1 protein NbS00012997g0006.1 protein NbS00012997g0007.1 protein NbS00012997g0009.1 protein NbS00012997g0010.1 protein ; (*ITAG) Solyc04g080580.2.1 (e_value=3e-17) genomic_reference:SL2.40ch04 gene_region:62290777-62294618 transcript_region:SL2.40ch04:62290777..62294618+ go_terms:GO:0016301 functional_description:"Kinase PfkB family (AHRD V1 **** D4WID3_BACOV); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0016301 NbS00054157g0003.1 protein NbS00017299g0005.1 protein NbS00018928g0013.1 protein NbS00018928g0008.1 protein NbS00010923g0001.1 protein ; (*ITAG) Solyc04g074850.2.1 (e_value=6e-23) genomic_reference:SL2.40ch04 gene_region:58359526-58369622 transcript_region:SL2.40ch04:58359526..58369622- go_terms:GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015559 NbS00040019g0001.1 protein NbS00020023g0005.1 protein NbS00020023g0008.1 protein NbS00009237g0007.1 protein NbS00000225g0003.1 protein NbS00027975g0006.1 protein ; (*GB) gi|242039081|ref|XP_002466935.1| (e_value=7e-17) hypothetical protein SORBIDRAFT_01g016990 [Sorghum bicolor];; (*TAIR) AT4G10730.1 (e_value=8e-17) | Symbols: | Protein kinase superfamily protein | chr4:6609793-6614786 REVERSE LENGTH=711;; (*ITAG) Solyc08g083040.2.1 (e_value=1e-17) genomic_reference:SL2.40ch08 gene_region:62790918-62801166 transcript_region:SL2.40ch08:62790918..62801166- go_terms:GO:0006468 functional_description:"Serine/threonine protein kinase (AHRD V1 *-*- Q16PN5_AEDAE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00039381g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-23) hypothetical protein [Nicotiana tabacum]; NbS00008147g0005.1 protein NbS00004642g0005.1 protein NbS00034315g0004.1 protein NbS00034315g0005.1 protein NbS00018239g0005.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=3e-19) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=1e-29) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00061333g0002.1 protein NbS00011397g0103.1 protein NbS00011397g0108.1 protein NbS00011397g0109.1 protein NbS00021889g0001.1 protein NbS00044805g0003.1 protein NbS00023984g0004.1 protein NbS00027359g0006.1 protein NbS00022021g0004.1 protein NbC26180034g0001.1 protein NbS00015176g0110.1 protein NbS00022732g0003.1 protein NbS00000812g0106.1 protein NbS00004988g0106.1 protein NbS00004988g0108.1 protein NbS00004280g0004.1 protein NbS00004280g0108.1 protein NbS00001587g0011.1 protein NbS00024694g0011.1 protein NbS00024694g0012.1 protein NbS00024694g0008.1 protein NbS00062259g0002.1 protein NbS00002556g0006.1 protein NbS00011158g0005.1 protein NbS00014034g0002.1 protein ; (*GB) gi|225447639|ref|XP_002271384.1| (e_value=3e-81) PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Vitis vinifera];; (*SWP) sp|Q8R307|VPS18_MOUSE (e_value=3e-30) Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2;; (*TAIR) AT1G12470.1 (e_value=1e-81) | Symbols: | zinc ion binding | chr1:4251359-4257201 FORWARD LENGTH=988;; (*ITAG) Solyc06g005080.2.1 (e_value=7e-89) genomic_reference:SL2.40ch06 gene_region:59970-96654 transcript_region:SL2.40ch06:59970..96654- go_terms:GO:0003779 functional_description:"Vacuolar protein sorting-associated protein 18 (AHRD V1 ***- D0MR96_PHYIN); contains Interpro domain(s) IPR007810 Pep3/Vps18/deep orange "; GO:0003779 NbS00002131g0009.1 protein NbS00006431g0001.1 protein NbS00026114g0005.1 protein NbS00004340g0011.1 protein ; (*GB) gi|356552922|ref|XP_003544811.1| (e_value=4e-29) PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max];; (*TAIR) AT1G22460.1 (e_value=2e-23) | Symbols: | O-fucosyltransferase family protein | chr1:7927530-7930351 REVERSE LENGTH=565;; (*ITAG) Solyc04g074670.2.1 (e_value=9e-38) genomic_reference:SL2.40ch04 gene_region:58174877-58181101 transcript_region:SL2.40ch04:58174877..58181101- functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00004340g0005.1 protein ; (*GB) gi|147768947|emb|CAN69258.1| (e_value=6e-13) hypothetical protein VITISV_026383 [Vitis vinifera]; NbS00009826g0006.1 protein NbS00012223g0009.1 protein NbS00043226g0001.1 protein ; (*GB) gi|47716659|gb|AAT37529.1| (e_value=1e-49) purple acid phosphatase 1 [Solanum tuberosum];; (*SWP) sp|Q8H129|PPA3_ARATH (e_value=2e-42) Purple acid phosphatase 3 OS=Arabidopsis thaliana GN=PAP3 PE=2 SV=1;; (*TAIR) AT1G14700.2 (e_value=3e-44) | Symbols: PAP3, ATPAP3 | purple acid phosphatase 3 | chr1:5058680-5060988 FORWARD LENGTH=364;; (*ITAG) Solyc04g008260.2.1 (e_value=6e-50) genomic_reference:SL2.40ch04 gene_region:1939951-1945165 transcript_region:SL2.40ch04:1939951..1945165- go_terms:GO:0004722 functional_description:"Acid phosphatase (AHRD V1 **** B9XQU4_9BACT); contains Interpro domain(s) IPR004843 Metallophosphoesterase "; GO:0004722 NbS00001860g0010.1 protein NbS00020639g0003.1 protein ; (*GB) gi|359476848|ref|XP_002267100.2| (e_value=3e-32) PREDICTED: zinc finger CCCH domain-containing protein 44-like [Vitis vinifera];; (*SWP) sp|Q9SD34|C3H44_ARATH (e_value=2e-28) Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=3;; (*TAIR) AT3G51120.1 (e_value=2e-29) | Symbols: | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding | chr3:18986026-18991886 REVERSE LENGTH=1292;; (*ITAG) Solyc02g084510.2.1 (e_value=7e-46) genomic_reference:SL2.40ch02 gene_region:42182207-42188574 transcript_region:SL2.40ch02:42182207..42188574+ go_terms:GO:0005634,GO:0008270 functional_description:"Novel protein containing a PHD-finger domain (Fragment) (AHRD V1 *--- Q07G27_XENTR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00026757g0003.1 protein NbS00026757g0105.1 protein NbS00026757g0110.1 protein NbS00026757g0206.1 protein NbS00015631g0005.1 protein NbS00020349g0009.1 protein NbS00044767g0014.1 protein NbS00043298g0003.1 protein NbS00043298g0005.1 protein NbS00043298g0006.1 protein NbS00045671g0005.1 protein NbS00022808g0003.1 protein NbS00015750g0103.1 protein NbS00015750g0107.1 protein NbS00015750g0109.1 protein NbS00003916g0107.1 protein NbS00058758g0003.1 protein ; (*GB) gi|350534934|ref|NP_001234423.1| (e_value=1e-26) chaperonin 21 precursor [Solanum lycopersicum];; (*SWP) sp|O65282|CH10C_ARATH (e_value=4e-15) 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2;; (*TAIR) AT5G20720.3 (e_value=3e-16) | Symbols: CPN20 | chaperonin 20 | chr5:7015015-7016354 FORWARD LENGTH=253;; (*ITAG) Solyc07g042250.2.1 (e_value=2e-29) genomic_reference:SL2.40ch07 gene_region:52684617-52687267 transcript_region:SL2.40ch07:52684617..52687267+ go_terms:GO:0051087 functional_description:"chaperonin (AHRD V1 *-*- B4WMS9_9SYNE); contains Interpro domain(s) IPR017416 Chaperonin 21, chloroplast IPR018369 Chaperonin Cpn10, conserved site "; GO:0051087 NbS00016285g0013.1 protein ; (*ITAG) Solyc11g012740.1.1 (e_value=7e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5494026-5508912 transcript_region:SL2.40ch11:5494026..5508912- functional_description:"Regulation of nuclear pre-mRNA domain containing 1B (AHRD V1 *-*- B5DEK0_RAT); contains Interpro domain(s) IPR006903 Protein of unknown function DUF618 "; NbS00016285g0005.1 protein ; (*GB) gi|115439497|ref|NP_001044028.1| (e_value=2e-25) Os01g0708600 [Oryza sativa Japonica Group];; (*TAIR) AT5G58030.1 (e_value=5e-27) | Symbols: | Transport protein particle (TRAPP) component | chr5:23487021-23488483 REVERSE LENGTH=195;; (*ITAG) Solyc04g015050.2.1 (e_value=1e-27) genomic_reference:SL2.40ch04 gene_region:5249508-5255638 transcript_region:SL2.40ch04:5249508..5255638+ functional_description:"Trafficking protein particle complex subunit 5 (AHRD V1 ***- C1BHU1_ONCMY); contains Interpro domain(s) IPR016696 TRAPP I complex, Trs31 "; NbS00016285g0007.1 protein NbS00056508g0002.1 protein NbS00061886g0001.1 protein ; (*GB) gi|57013884|ref|YP_173358.1| (e_value=2e-55) orf297a [Nicotiana tabacum]; NbS00020733g0002.1 protein NbS00033634g0003.1 protein NbS00033634g0007.1 protein NbS00025710g0005.1 protein ; (*GB) gi|224086673|ref|XP_002307926.1| (e_value=2e-15) predicted protein [Populus trichocarpa];; (*SWP) sp|Q6I5Y0|CDKC1_ORYSJ (e_value=2e-16) Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1;; (*ITAG) Solyc06g073630.2.1 (e_value=4e-21) genomic_reference:SL2.40ch06 gene_region:41813794-41819775 transcript_region:SL2.40ch06:41813794..41819775+ go_terms:GO:0004693 functional_description:"Cell division protein kinase 9 (AHRD V1 **** B5X0Q0_SALSA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004693 NbS00046523g0001.1 protein NbS00022415g0012.1 protein NbS00022415g0010.1 protein NbS00021038g0003.1 protein NbS00028053g0003.1 protein NbS00028053g0004.1 protein NbS00023093g0019.1 protein NbS00023093g0020.1 protein NbS00017601g0004.1 protein NbS00017601g0005.1 protein NbS00017601g0006.1 protein NbS00048230g0005.1 protein NbS00005812g0005.1 protein NbS00008852g0003.1 protein NbS00008852g0006.1 protein NbS00000822g0007.1 protein NbS00016495g0112.1 protein NbS00016495g0113.1 protein NbS00016495g0110.1 protein NbS00007031g0004.1 protein ; (*ITAG) Solyc10g047840.1.1 (e_value=3e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch10 gene_region:38297794-38303091 transcript_region:SL2.40ch10:38297794..38303091- go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00007031g0007.1 protein NbS00007031g0009.1 protein ; (*ITAG) Solyc01g015110.1.1 (e_value=3e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:16813018-16816491 transcript_region:SL2.40ch01:16813018..16816491+ functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE)"; NbS00032242g0003.1 protein NbS00032242g0005.1 protein NbS00027435g0004.1 protein ; (*GB) gi|584863|sp|P37117.1|C71A4_SOLME (e_value=8e-18) RecName: Full=Cytochrome P450 71A4; AltName: Full=CYPLXXIA4; AltName: Full=Cytochrome P-450EG2;; (*SWP) sp|P37117|C71A4_SOLME (e_value=2e-19) Cytochrome P450 71A4 OS=Solanum melongena GN=CYP71A4 PE=2 SV=1;; (*ITAG) Solyc03g111940.2.1 (e_value=2e-21) genomic_reference:SL2.40ch03 gene_region:56563767-56565607 transcript_region:SL2.40ch03:56563767..56565607+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00000844g0005.1 protein NbS00011422g0009.1 protein NbS00013319g0004.1 protein NbS00048443g0003.1 protein NbS00033084g0004.1 protein NbS00033084g0005.1 protein NbS00015066g0002.1 protein NbS00036150g0006.1 protein NbS00019283g0002.1 protein NbS00006832g0001.1 protein ; (*GB) gi|255602851|ref|XP_002537934.1| (e_value=5e-24) Photosystem I P700 chlorophyll a apoprotein A2, putative [Ricinus communis];; (*SWP) sp|A1E9S3|PSAB_SORBI (e_value=1e-24) Photosystem I P700 chlorophyll a apoprotein A2 OS=Sorghum bicolor GN=psaB PE=3 SV=1;; (*ITAG) ATCG00340.1 (e_value=1e-25) | Symbols: PSAB | Photosystem I, PsaA/PsaB protein | chrC:37375-39579 REVERSE LENGTH=734;; (*ITAG) Solyc12g033060.1.1 (e_value=2e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:22377108-22378023 transcript_region:SL2.40ch12:22377108..22378023+ go_terms:GO:0016021 functional_description:"Photosystem I P700 chlorophyll a apoprotein A2 (AHRD V1 ***- A7Y3D1_IPOPU); contains Interpro domain(s) IPR001280 Photosystem I psaA and psaB "; GO:0016021 NbS00006832g0101.1 protein NbS00055522g0002.1 protein NbS00055522g0003.1 protein NbS00005245g0002.1 protein NbC25030171g0001.1 protein ; (*GB) gi|147777380|emb|CAN67197.1| (e_value=4e-23) hypothetical protein VITISV_001852 [Vitis vinifera];; (*SWP) sp|Q9LVD4|ORP4C_ARATH (e_value=1e-16) Oxysterol-binding protein-related protein 4C OS=Arabidopsis thaliana GN=ORP4C PE=2 SV=1;; (*TAIR) AT5G57240.2 (e_value=8e-18) | Symbols: ORP4C | OSBP(oxysterol binding protein)-related protein 4C | chr5:23193449-23195303 FORWARD LENGTH=379;; (*ITAG) Solyc07g008920.2.1 (e_value=1e-36) genomic_reference:SL2.40ch07 gene_region:3917140-3925087 transcript_region:SL2.40ch07:3917140..3925087+ go_terms:GO:0008142 functional_description:"Oxysterol-binding protein (AHRD V1 **** Q2HUM2_MEDTR); contains Interpro domain(s) IPR000648 Oxysterol-binding protein "; GO:0008142 NbS00051596g0009.1 protein ; (*GB) gi|326509129|dbj|BAJ86957.1| (e_value=4e-12) predicted protein [Hordeum vulgare subsp. vulgare]; NbS00005722g0002.1 protein NbS00039628g0002.1 protein NbS00005379g0003.1 protein NbS00050914g0001.1 protein ; (*ITAG) Solyc03g120330.1.1 (e_value=1e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:62808621-62809706 transcript_region:SL2.40ch03:62808621..62809706- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDI0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00026554g0003.1 protein ; (*ITAG) Solyc06g072660.2.1 (e_value=8e-15) genomic_reference:SL2.40ch06 gene_region:41196763-41202118 transcript_region:SL2.40ch06:41196763..41202118- functional_description:"Dek protein (AHRD V1 *-*- B6SWA1_MAIZE); contains Interpro domain(s) IPR014876 DEK, C-terminal "; NbS00026554g0006.1 protein NbS00006888g0004.1 protein NbS00001632g0001.1 protein NbS00021581g0007.1 protein NbS00033020g0003.1 protein NbS00022147g0011.1 protein NbS00022147g0008.1 protein NbS00023552g0002.1 protein NbS00023552g0004.1 protein NbS00002172g0007.1 protein NbS00002172g0010.1 protein NbS00021642g0010.1 protein NbS00017163g0001.1 protein NbS00050167g0006.1 protein NbS00047054g0001.1 protein NbS00013049g0007.1 protein ; (*GB) gi|255572994|ref|XP_002527427.1| (e_value=6e-22) srpk, putative [Ricinus communis];; (*SWP) sp|Q61IS6|SPK1_CAEBR (e_value=3e-15) Serine/threonine-protein kinase spk-1 OS=Caenorhabditis briggsae GN=spk-1 PE=3 SV=2;; (*TAIR) AT5G22840.1 (e_value=1e-22) | Symbols: | Protein kinase superfamily protein | chr5:7631103-7633103 REVERSE LENGTH=538;; (*ITAG) Solyc09g008790.2.1 (e_value=1e-25) genomic_reference:SL2.40ch09 gene_region:2214074-2219739 transcript_region:SL2.40ch09:2214074..2219739- go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q2U1C3_ASPOR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00040348g0001.1 protein NbC23491245g0001.1 protein ; (*GB) gi|255583387|ref|XP_002532454.1| (e_value=2e-33) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9SE97|FH1_ARATH (e_value=5e-32) Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1;; (*TAIR) AT3G25500.1 (e_value=4e-33) | Symbols: AFH1, FH1, AHF1, ATFH1 | formin homology 1 | chr3:9251320-9254826 REVERSE LENGTH=1051;; (*ITAG) Solyc09g042740.2.1 (e_value=4e-39) genomic_reference:SL2.40ch09 gene_region:29840544-29844761 transcript_region:SL2.40ch09:29840544..29844761+ go_terms:GO:0030036 functional_description:"Formin 3 (AHRD V1 *-*- D0QAN4_ARATH); contains Interpro domain(s) IPR015425 Actin-binding FH2 "; GO:0030036 NbS00019513g0003.1 protein NbS00019513g0004.1 protein NbS00012872g0002.1 protein NbS00022074g0003.1 protein NbS00044283g0001.1 protein NbS00056591g0005.1 protein NbS00001706g0005.1 protein NbS00001706g0006.1 protein NbS00008340g0004.1 protein NbS00017301g0007.1 protein NbS00022664g0107.1 protein NbS00022664g0108.1 protein NbS00045692g0001.1 protein NbS00011711g0013.1 protein NbS00011711g0009.1 protein NbS00022725g0003.1 protein NbS00043162g0004.1 protein ; (*GB) gi|48057665|gb|AAT39964.1| (e_value=3e-32) Putative gag polyprotein, identical [Solanum demissum]; NbS00016442g0008.1 protein NbS00008148g0006.1 protein ; (*ITAG) Solyc01g057900.2.1 (e_value=2e-14) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00008148g0007.1 protein NbS00008148g0008.1 protein ; (*GB) gi|255556492|ref|XP_002519280.1| (e_value=2e-24) ubiquitin-protein ligase, putative [Ricinus communis];; (*SWP) sp|Q8RWB8|UPL6_ARATH (e_value=1e-21) E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1;; (*TAIR) AT3G17205.3 (e_value=8e-23) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1029;; (*ITAG) Solyc01g057900.2.1 (e_value=1e-27) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00026888g0003.1 protein NbS00015713g0002.1 protein NbS00025548g0003.1 protein NbS00025548g0005.1 protein NbS00011301g0002.1 protein NbS00000137g0009.1 protein ; (*ITAG) Solyc11g065110.1.1 (e_value=2e-40) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47513848-47521993 transcript_region:SL2.40ch11:47513848..47521993+ go_terms:GO:0006355,GO:0045449 functional_description:"Homeobox protein (AHRD V1 *-*- D6BV21_ORYSJ); contains Interpro domain(s) IPR001356 Homeobox "; GO:0006355,GO:0045449 NbS00010295g0006.1 protein NbS00016532g0001.1 protein NbS00046069g0004.1 protein NbS00006192g0006.1 protein NbS00000847g0010.1 protein NbS00037793g0004.1 protein NbS00011033g0014.1 protein ; (*GB) gi|297736774|emb|CBI25975.3| (e_value=3e-40) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G48090.1 (e_value=4e-40) | Symbols: | calcium-dependent lipid-binding family protein | chr1:17732582-17758194 REVERSE LENGTH=4146;; (*ITAG) Solyc09g009350.2.1 (e_value=8e-47) genomic_reference:SL2.40ch09 gene_region:2732772-2762828 transcript_region:SL2.40ch09:2732772..2762828+ functional_description:"Vacuolar sorting-associated protein (AHRD V1 ***- C0NJR3_AJECG)"; NbS00025120g0001.1 protein NbS00031289g0003.1 protein NbS00031289g0005.1 protein NbS00047036g0002.1 protein NbS00024833g0103.1 protein NbS00024833g0104.1 protein NbC25862411g0002.1 protein NbS00002411g0005.1 protein NbS00039578g0003.1 protein NbS00025065g0005.1 protein ; (*ITAG) Solyc12g099810.1.1 (e_value=9e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:65140093-65148741 transcript_region:SL2.40ch12:65140093..65148741- functional_description:"Crt homolog 1 (AHRD V1 **-- CRTP1_DICDI)"; NbS00048344g0004.1 protein NbS00013970g0008.1 protein NbS00017210g0003.1 protein NbS00007583g0003.1 protein NbS00007583g0005.1 protein NbS00019210g0004.1 protein NbS00019210g0007.1 protein NbS00011635g0006.1 protein NbS00052736g0001.1 protein NbS00059035g0004.1 protein NbS00002389g0009.1 protein NbS00059031g0007.1 protein ; (*GB) gi|21358787|gb|AAM47025.1| (e_value=4e-13) nam-like protein 1 [Petunia x hybrida]; NbS00012770g0003.1 protein NbS00012770g0004.1 protein NbS00039148g0001.1 protein ; (*ITAG) Solyc08g007110.2.1 (e_value=2e-17) genomic_reference:SL2.40ch08 gene_region:1670182-1682050 transcript_region:SL2.40ch08:1670182..1682050+ go_terms:GO:0004004 functional_description:"ATP dependent helicase (AHRD V1 **-* A8NEE6_COPC7); contains Interpro domain(s) IPR018999 RNA helicase UPF1, UPF2-interacting domain "; GO:0004004 NbS00013010g0012.1 protein NbS00013010g0013.1 protein NbS00002355g0004.1 protein NbS00002355g0007.1 protein NbS00002355g0008.1 protein ; (*GB) gi|225426379|ref|XP_002271860.1| (e_value=6e-27) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform 2 [Vitis vinifera];; (*ITAG) Solyc08g080830.2.1 (e_value=6e-35) genomic_reference:SL2.40ch08 gene_region:61177982-61182919 transcript_region:SL2.40ch08:61177982..61182919- go_terms:GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0004675 NbS00002355g0009.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=2e-28) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00023187g0002.1 protein NbS00013462g0001.1 protein NbS00009576g0003.1 protein ; (*GB) gi|89111299|dbj|BAE80324.1| (e_value=1e-20) cyclin D3-1 [Camellia sinensis];; (*SWP) sp|P42753|CCD31_ARATH (e_value=6e-20) Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3;; (*TAIR) AT4G34160.1 (e_value=5e-21) | Symbols: CYCD3;1, CYCD3 | CYCLIN D3;1 | chr4:16357903-16359304 FORWARD LENGTH=376;; (*ITAG) Solyc04g078470.2.1 (e_value=6e-23) genomic_reference:SL2.40ch04 gene_region:60795941-60797791 transcript_region:SL2.40ch04:60795941..60797791- go_terms:GO:0004723 functional_description:"Cyclin D3-1 (AHRD V1 ***- Q2ABE7_CAMSI); contains Interpro domain(s) IPR015451 Cyclin D "; GO:0004723 NbS00009576g0004.1 protein NbS00009576g0005.1 protein NbC25574164g0001.1 protein ; (*GB) gi|18399399|ref|NP_565477.1| (e_value=3e-22) 26S proteasome regulatory subunit N1 [Arabidopsis thaliana];; (*SWP) sp|Q9SIV2|RPN1A_ARATH (e_value=8e-24) 26S proteasome non-ATPase regulatory subunit 2 1A OS=Arabidopsis thaliana GN=RPN1A PE=1 SV=2;; (*TAIR) AT2G20580.1 (e_value=6e-25) | Symbols: RPN1A, ATRPN1A | 26S proteasome regulatory subunit S2 1A | chr2:8859211-8864699 FORWARD LENGTH=891;; (*ITAG) Solyc07g053650.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:59419978-59430740 transcript_region:SL2.40ch07:59419978..59430740+ go_terms:GO:0030674,GO:0004175 functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8J3A4_CHLRE); contains Interpro domain(s) IPR016643 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit "; GO:0030674,GO:0004175 NbS00001540g0004.1 protein NbS00021303g0007.1 protein NbS00000499g0004.1 protein NbS00014757g0004.1 protein NbS00014757g0008.1 protein NbS00014757g0009.1 protein NbS00014757g0103.1 protein NbS00015977g0001.1 protein NbS00015977g0002.1 protein NbS00006998g0014.1 protein NbS00006998g0018.1 protein NbS00006998g0023.1 protein NbS00006998g0025.1 protein NbS00006998g0026.1 protein ; (*GB) gi|224096886|ref|XP_002310774.1| (e_value=7e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc04g079830.2.1 (e_value=5e-47) genomic_reference:SL2.40ch04 gene_region:61729325-61740234 transcript_region:SL2.40ch04:61729325..61740234- go_terms:GO:0005634,GO:0006355,GO:0045449 functional_description:"BEL1-like homeodomain protein 2 (AHRD V1 *--- BLH2_ARATH); contains Interpro domain(s) IPR006563 POX "; GO:0005634,GO:0006355,GO:0045449 NbS00006998g0027.1 protein NbS00004086g0009.1 protein NbS00036093g0004.1 protein NbS00012980g0002.1 protein ; (*ITAG) Solyc08g016290.1.1 (e_value=2e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7058200-7060690 transcript_region:SL2.40ch08:7058200..7060690- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SLM0_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00012980g0004.1 protein NbS00028745g0004.1 protein NbS00020569g0012.1 protein NbS00020569g0008.1 protein NbS00020569g0010.1 protein NbS00008011g0014.1 protein NbS00016625g0011.1 protein ; (*GB) gi|262192753|gb|ACY30446.1| (e_value=1e-21) gigantea-like protein [Liriodendron tulipifera];; (*SWP) sp|Q9SQI2|GIGAN_ARATH (e_value=7e-23) Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2;; (*TAIR) AT1G22770.1 (e_value=5e-24) | Symbols: GI, FB | gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173;; (*ITAG) Solyc12g056650.1.1 (e_value=4e-24) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47985938-47998455 transcript_region:SL2.40ch12:47985938..47998455- go_terms:GO:0005515 functional_description:"Tomato GIGANTEA 2"; GO:0005515 NbS00016625g0007.1 protein NbS00038588g0006.1 protein NbS00023224g0001.1 protein NbS00008754g0013.1 protein NbS00008754g0015.1 protein NbS00008754g0009.1 protein NbS00013481g0002.1 protein NbS00046863g0005.1 protein NbS00046863g0006.1 protein NbS00040215g0002.1 protein ; (*GB) gi|147789258|emb|CAN71151.1| (e_value=1e-14) hypothetical protein VITISV_020967 [Vitis vinifera];; (*TAIR) AT4G27390.1 (e_value=2e-13) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:13703417-13704655 REVERSE LENGTH=235;; (*ITAG) Solyc07g063530.2.1 (e_value=6e-22) genomic_reference:SL2.40ch07 gene_region:63212972-63217701 transcript_region:SL2.40ch07:63212972..63217701+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007204g0003.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-17) RNase H family protein [Solanum demissum]; NbS00006091g0008.1 protein NbS00006837g0005.1 protein ; (*GB) gi|356513241|ref|XP_003525322.1| (e_value=2e-86) PREDICTED: cytochrome P450 716B2-like [Glycine max];; (*SWP) sp|Q50EK0|C16B2_PICSI (e_value=5e-62) Cytochrome P450 716B2 OS=Picea sitchensis GN=CYP716B2 PE=2 SV=1;; (*TAIR) AT5G36110.1 (e_value=3e-71) | Symbols: CYP716A1 | cytochrome P450, family 716, subfamily A, polypeptide 1 | chr5:14195377-14197613 FORWARD LENGTH=477;; (*ITAG) Solyc05g021390.2.1 (e_value=1e-85) genomic_reference:SL2.40ch05 gene_region:27157336-27159140 transcript_region:SL2.40ch05:27157336..27159140+ go_terms:GO:0008401 functional_description:"Cytochrome P450"; GO:0008401 NbS00006837g0006.1 protein NbS00024325g0011.1 protein NbS00024325g0008.1 protein ; (*ITAG) Solyc03g121030.1.1 (e_value=3e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch03 gene_region:63310422-63322664 transcript_region:SL2.40ch03:63310422..63322664- go_terms:GO:0005737,GO:0005488 functional_description:"DNA repair/transcription protein Mms19-like protein (AHRD V1 *-*- Q6ZEY8_ORYSJ); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005737,GO:0005488 NbS00050666g0004.1 protein NbS00049421g0003.1 protein ; (*ITAG) Solyc05g008830.2.1 (e_value=3e-11) genomic_reference:SL2.40ch05 gene_region:3057292-3060357 transcript_region:SL2.40ch05:3057292..3060357+ functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7L8F8_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00049421g0006.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=3e-29) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00019213g0003.1 protein NbS00000682g0003.1 protein NbS00013084g0005.1 protein NbS00013084g0008.1 protein NbS00023286g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-28) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00035380g0008.1 protein NbS00035380g0010.1 protein NbS00045391g0006.1 protein NbS00026729g0002.1 protein NbS00032601g0006.1 protein NbS00037667g0009.1 protein NbS00037667g0010.1 protein NbS00027223g0004.1 protein ; (*GB) gi|225459429|ref|XP_002284321.1| (e_value=5e-25) PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Vitis vinifera];; (*SWP) sp|Q9SZ52|PP344_ARATH (e_value=3e-15) Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1;; (*TAIR) AT4G31850.1 (e_value=2e-16) | Symbols: PGR3 | proton gradient regulation 3 | chr4:15403020-15406358 FORWARD LENGTH=1112;; (*ITAG) Solyc04g080830.2.1 (e_value=2e-17) genomic_reference:SL2.40ch04 gene_region:62501648-62505187 transcript_region:SL2.40ch04:62501648..62505187- go_terms:GO:0004519 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KGE6_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519 NbS00018794g0009.1 protein NbS00027937g0002.1 protein NbS00000463g0001.1 protein NbS00016663g0002.1 protein NbS00016864g0006.1 protein NbS00016864g0009.1 protein NbS00026136g0016.1 protein NbS00035554g0005.1 protein NbS00035554g0007.1 protein NbS00036257g0006.1 protein NbS00030742g0006.1 protein NbS00030742g0009.1 protein NbS00012791g0007.1 protein NbS00012791g0008.1 protein NbS00053639g0011.1 protein NbS00003394g0005.1 protein NbS00000796g0004.1 protein NbS00004316g0006.1 protein ; (*GB) gi|255570566|ref|XP_002526240.1| (e_value=2e-60) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9FLS0|FB253_ARATH (e_value=1e-40) F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1;; (*TAIR) AT5G07610.1 (e_value=1e-41) | Symbols: | F-box family protein | chr5:2406068-2407330 FORWARD LENGTH=420;; (*ITAG) Solyc07g015800.1.1 (e_value=6e-52) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch07 gene_region:5404883-5406202 transcript_region:SL2.40ch07:5404883..5406202- functional_description:"F-box family protein (AHRD V1 ***- B9HV09_POPTR); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00004316g0007.1 protein NbS00031485g0005.1 protein ; (*GB) gi|147765808|emb|CAN73373.1| (e_value=5e-39) hypothetical protein VITISV_006322 [Vitis vinifera];; (*TAIR) AT1G28760.1 (e_value=3e-21) | Symbols: | Uncharacterized conserved protein (DUF2215) | chr1:10103158-10104588 FORWARD LENGTH=476;; (*ITAG) Solyc01g057090.2.1 (e_value=1e-59) genomic_reference:SL2.40ch01 gene_region:51248321-51270797 transcript_region:SL2.40ch01:51248321..51270797- functional_description:"Rhodopsin-like receptor (AHRD V1 ***- B6TUA3_MAIZE); contains Interpro domain(s) IPR019358 Protein of unknown function DUF2215 "; NbS00053099g0002.1 protein ; (*GB) gi|239582692|dbj|BAH70368.1| (e_value=1e-40) DnaJ-like protein [Nicotiana tabacum];; (*TAIR) AT5G48030.1 (e_value=1e-29) | Symbols: GFA2 | gametophytic factor 2 | chr5:19466298-19469753 REVERSE LENGTH=456;; (*ITAG) Solyc01g086740.2.1 (e_value=3e-43) genomic_reference:SL2.40ch01 gene_region:73447785-73457353 transcript_region:SL2.40ch01:73447785..73457353+ go_terms:GO:0006457,GO:0009408,GO:0031072 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- B6TA99_MAIZE); contains Interpro domain(s) IPR012724 Chaperone DnaJ "; GO:0006457,GO:0009408,GO:0031072 NbS00056122g0010.1 protein NbS00011804g0002.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=2e-22) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*ITAG) Solyc05g021350.1.1 (e_value=9e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00047697g0005.1 protein NbS00012878g0011.1 protein NbS00002017g0009.1 protein NbS00022714g0005.1 protein NbS00023436g0003.1 protein NbS00032642g0006.1 protein NbS00032642g0008.1 protein NbS00032587g0010.1 protein NbS00006017g0004.1 protein ; (*GB) gi|225448645|ref|XP_002274437.1| (e_value=2e-15) PREDICTED: mini-chromosome maintenance complex-binding protein [Vitis vinifera];; (*SWP) sp|Q501D5|MCMBP_ARATH (e_value=7e-14) Mini-chromosome maintenance complex-binding protein OS=Arabidopsis thaliana GN=ETG1 PE=1 SV=1;; (*TAIR) AT2G40550.1 (e_value=5e-15) | Symbols: ETG1 | E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589; NbS00019325g0007.1 protein NbS00016299g0002.1 protein ; (*GB) gi|53749448|gb|AAU90304.1| (e_value=2e-14) MuDR family transposase containing protein [Solanum demissum];; (*ITAG) Solyc04g071390.1.1 (e_value=4e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:55961936-55964244 transcript_region:SL2.40ch04:55961936..55964244- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9SJD8_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbC24659204g0001.1 protein ; (*ITAG) Solyc04g008410.1.1 (e_value=1e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2031778-2034108 transcript_region:SL2.40ch04:2031778..2034108- functional_description:"Pentatricopeptide repeat-containing protein-like protein (AHRD V1 ***- Q8H4R8_ORYSJ); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00029017g0004.1 protein NbS00038101g0004.1 protein NbS00022795g0005.1 protein NbS00022795g0006.1 protein NbS00022795g0007.1 protein NbS00004987g0006.1 protein NbS00004987g0007.1 protein NbS00004987g0009.1 protein NbS00022512g0007.1 protein NbS00013071g0011.1 protein NbS00013071g0013.1 protein NbS00013071g0014.1 protein ; (*GB) gi|356509565|ref|XP_003523518.1| (e_value=2e-13) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250-like [Glycine max];; (*ITAG) Solyc01g109650.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:88293661-88299718 transcript_region:SL2.40ch01:88293661..88299718- go_terms:GO:0005515,GO:0004675 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0004675 NbS00001169g0002.1 protein NbS00001169g0123.1 protein NbS00001169g0134.1 protein NbS00001169g0140.1 protein NbS00016590g0004.1 protein NbS00002303g0001.1 protein NbS00000109g0016.1 protein NbS00007693g0004.1 protein NbS00007693g0103.1 protein NbS00008304g0011.1 protein NbS00008304g0008.1 protein ; (*GB) gi|224105113|ref|XP_002313691.1| (e_value=1e-25) predicted protein [Populus trichocarpa];; (*TAIR) AT2G16970.1 (e_value=2e-13) | Symbols: MEE15 | Major facilitator superfamily protein | chr2:7369549-7375528 FORWARD LENGTH=446;; (*ITAG) Solyc01g111840.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:89767571-89772096 transcript_region:SL2.40ch01:89767571..89772096+ go_terms:GO:0008493 functional_description:"MFS-type drug efflux transporter P55 (AHRD V1 *--* MFS55_MYCTU); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0008493 NbS00049592g0005.1 protein NbS00004858g0113.1 protein NbS00004858g0115.1 protein NbS00004858g0108.1 protein NbS00004858g0109.1 protein NbS00015451g0013.1 protein NbS00035679g0003.1 protein NbS00035679g0005.1 protein NbS00011334g0004.1 protein NbS00036616g0003.1 protein NbS00051470g0006.1 protein ; (*ITAG) Solyc09g090760.2.1 (e_value=7e-18) genomic_reference:SL2.40ch09 gene_region:65538656-65545271 transcript_region:SL2.40ch09:65538656..65545271+ functional_description:"Folate/biopterin transporter family protein (AHRD V1 *-*- B6TYM7_MAIZE); contains Interpro domain(s) IPR004324 Biopterin transport-related protein BT1 "; NbS00026752g0003.1 protein NbS00035124g0003.1 protein NbS00009607g0012.1 protein ; (*ITAG) Solyc03g117950.2.1 (e_value=1e-23) genomic_reference:SL2.40ch03 gene_region:60977137-60983778 transcript_region:SL2.40ch03:60977137..60983778- go_terms:GO:0019538,GO:0005524,GO:0017111,GO:0016021 functional_description:"Chaperone protein ClpB 1 (AHRD V1 **-- D0CK17_9SYNE); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2 "; GO:0019538,GO:0005524,GO:0017111,GO:0016021 NbS00054363g0007.1 protein NbS00017783g0010.1 protein NbS00002627g0007.1 protein NbS00002627g0009.1 protein NbS00002627g0010.1 protein NbS00022934g0002.1 protein ; (*ITAG) Solyc01g103690.2.1 (e_value=1e-17) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00022934g0003.1 protein ; (*GB) gi|224134665|ref|XP_002321878.1| (e_value=9e-16) ABC transporter family protein [Populus trichocarpa];; (*SWP) sp|Q8LPQ6|AB28B_ARATH (e_value=9e-15) ABC transporter B family member 28 OS=Arabidopsis thaliana GN=ABCB28 PE=2 SV=1;; (*TAIR) AT4G25450.1 (e_value=7e-16) | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein 8 | chr4:13009845-13013912 REVERSE LENGTH=714;; (*ITAG) Solyc03g026310.2.1 (e_value=8e-39) genomic_reference:SL2.40ch03 gene_region:8122351-8133100 transcript_region:SL2.40ch03:8122351..8133100+ go_terms:GO:0046982 functional_description:"ABC transporter permease/ATP-binding protein (AHRD V1 ***- A6ANR0_VIBHA); contains Interpro domain(s) IPR001140 ABC transporter, transmembrane region "; GO:0046982 NbS00023693g0005.1 protein NbS00010745g0007.1 protein NbS00019160g0003.1 protein NbS00002208g0005.1 protein NbS00017727g0011.1 protein NbS00017727g0006.1 protein NbS00019856g0003.1 protein NbS00027235g0005.1 protein NbS00044888g0002.1 protein NbS00006727g0007.1 protein NbS00012317g0106.1 protein NbS00012317g0109.1 protein NbS00012317g0203.1 protein NbS00033519g0004.1 protein NbS00000778g0004.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=2e-38) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00034268g0003.1 protein ; (*ITAG) Solyc06g008150.2.1 (e_value=2e-12) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00005121g0103.1 protein NbS00005121g0107.1 protein NbS00008662g0003.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-17) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00027685g0003.1 protein NbS00027685g0006.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=4e-21) RNase H family protein [Solanum demissum];; (*ITAG) Solyc07g041740.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch07 gene_region:51403485-51403778 transcript_region:SL2.40ch07:51403485..51403778- go_terms:GO:0003676 functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold "; GO:0003676 NbS00027685g0007.1 protein NbS00014776g0008.1 protein NbS00014776g0009.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-17) predicted protein [Populus trichocarpa]; NbS00014776g0010.1 protein NbC25983181g0002.1 protein ; (*GB) gi|357490353|ref|XP_003615464.1| (e_value=1e-17) E3 ubiquitin-protein ligase synoviolin B [Medicago truncatula];; (*TAIR) AT5G01960.1 (e_value=4e-19) | Symbols: | RING/U-box superfamily protein | chr5:370811-372775 FORWARD LENGTH=426;; (*ITAG) Solyc03g095450.2.1 (e_value=7e-20) genomic_reference:SL2.40ch03 gene_region:50014714-50023523 transcript_region:SL2.40ch03:50014714..50023523- go_terms:GO:0008270 functional_description:"RING finger protein 141 (AHRD V1 *--- RN141_CANFA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00001323g0002.1 protein NbS00001323g0003.1 protein NbS00025616g0002.1 protein NbS00001115g0002.1 protein NbS00027348g0003.1 protein NbS00004007g0002.1 protein ; (*ITAG) Solyc05g013840.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:7222627-7223401 transcript_region:SL2.40ch05:7222627..7223401- go_terms:GO:0005622 functional_description:"Unknown Protein (AHRD V1)"; GO:0005622 NbS00058801g0009.1 protein NbS00002054g0008.1 protein NbS00006630g0005.1 protein ; (*GB) gi|227053577|gb|ACP18876.1| (e_value=3e-31) subtilisin-like serine protease [Carica papaya];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=1e-16) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT5G59810.1 (e_value=7e-30) | Symbols: ATSBT5.4, SBT5.4 | Subtilase family protein | chr5:24096895-24100387 REVERSE LENGTH=778;; (*ITAG) Solyc07g056170.2.1 (e_value=1e-34) genomic_reference:SL2.40ch07 gene_region:61346509-61351826 transcript_region:SL2.40ch07:61346509..61351826- go_terms:GO:0004252 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q6WNU4_SOYBN); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0004252 NbS00023491g0004.1 protein NbS00023491g0005.1 protein NbS00012724g0005.1 protein NbS00012724g0007.1 protein NbS00012724g0008.1 protein NbS00025728g0003.1 protein NbS00025728g0005.1 protein NbS00054168g0002.1 protein NbS00054168g0003.1 protein NbS00050902g0001.1 protein NbS00002370g0003.1 protein NbS00007635g0001.1 protein NbS00007769g0004.1 protein NbC26112781g0001.1 protein NbS00018820g0001.1 protein NbS00038043g0012.1 protein NbS00038043g0008.1 protein NbS00048026g0008.1 protein NbS00018932g0004.1 protein NbS00008058g0003.1 protein NbS00015509g0003.1 protein NbS00007564g0005.1 protein NbS00007564g0007.1 protein NbS00000441g0001.1 protein ; (*ITAG) Solyc12g042980.1.1 (e_value=7e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:44025898-44029069 transcript_region:SL2.40ch12:44025898..44029069+ go_terms:GO:0016491 functional_description:"2-oxoglutarate-dependent dioxygenase (Fragment) (AHRD V1 ***- Q944Z0_ARAHA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00056075g0002.1 protein NbS00030039g0001.1 protein NbS00036696g0002.1 protein NbS00037987g0001.1 protein NbS00003590g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-23) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=4e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00010265g0105.1 protein NbS00010265g0108.1 protein NbS00011285g0005.1 protein NbS00045220g0002.1 protein ; (*ITAG) Solyc04g081030.2.1 (e_value=2e-23) genomic_reference:SL2.40ch04 gene_region:62685343-62690654 transcript_region:SL2.40ch04:62685343..62690654+ functional_description:"Protein LTV1 homolog (AHRD V1 ***- LTV1_MOUSE); contains Interpro domain(s) IPR007307 Low temperature viability protein "; NbS00012055g0114.1 protein NbS00012055g0109.1 protein NbS00012055g0110.1 protein NbS00002630g0003.1 protein ; (*GB) gi|255569038|ref|XP_002525488.1| (e_value=1e-54) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT1G71410.1 (e_value=1e-24) | Symbols: | ARM repeat superfamily protein | chr1:26913070-26917515 REVERSE LENGTH=909;; (*ITAG) Solyc11g042990.1.1 (e_value=3e-116) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:34509225-34540344 transcript_region:SL2.40ch11:34509225..34540344+ go_terms:GO:0006468,GO:0005488 functional_description:"Kinase family protein (AHRD V1 ***- D7KYV4_ARALY); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005488 NbS00009753g0022.1 protein NbS00015228g0004.1 protein ; (*SWP) sp|P56333|IF5A1_SOLTU (e_value=5e-16) Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1;; (*TAIR) AT1G69410.1 (e_value=2e-14) | Symbols: ATELF5A-3, ELF5A-3 | eukaryotic elongation factor 5A-3 | chr1:26089301-26090194 FORWARD LENGTH=158;; (*ITAG) Solyc12g010060.1.1 (e_value=2e-16) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3203778-3206878 transcript_region:SL2.40ch12:3203778..3206878- go_terms:GO:0045905 functional_description:"Eukaryotic translation initiation factor 5A (AHRD V1 ***- Q207T7_GYMCO); contains Interpro domain(s) IPR019769 Translation elongation factor, IF5A, hypusine site "; GO:0045905 NbS00037421g0002.1 protein NbS00037421g0004.1 protein NbS00013163g0004.1 protein NbS00051074g0002.1 protein NbS00004889g0003.1 protein ; (*GB) gi|255569659|ref|XP_002525795.1| (e_value=2e-36) ATP synthase gamma chain 2, chloroplast, putative [Ricinus communis];; (*SWP) sp|P0C1M0|ATPG_MAIZE (e_value=8e-36) ATP synthase subunit gamma, chloroplastic OS=Zea mays PE=1 SV=1;; (*TAIR) AT1G15700.1 (e_value=5e-36) | Symbols: ATPC2 | ATPase, F1 complex, gamma subunit protein | chr1:5402629-5403789 REVERSE LENGTH=386;; (*ITAG) Solyc02g080540.1.1 (e_value=1e-36) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ go_terms:GO:0030234 functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "; GO:0030234 NbS00011702g0004.1 protein NbS00011702g0007.1 protein NbS00001721g0004.1 protein NbS00002946g0003.1 protein ; (*ITAG) Solyc12g006100.1.1 (e_value=9e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:666521-670776 transcript_region:SL2.40ch12:666521..670776+ go_terms:GO:0016787 functional_description:"Serine/threonine-protein phosphatase 4 catalytic subunit (AHRD V1 *-*- PP4C_KLULA); contains Interpro domain(s) IPR019557 Aminotransferase-like, plant mobile domain "; GO:0016787 NbS00014874g0001.1 protein NbS00005530g0005.1 protein NbS00018556g0004.1 protein NbC25841054g0001.1 protein ; (*GB) gi|255537385|ref|XP_002509759.1| (e_value=2e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g080840.1.1 (e_value=7e-35) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:61192691-61194635 transcript_region:SL2.40ch08:61192691..61194635+ functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SL47_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; NbC25841054g0002.1 protein ; (*ITAG) Solyc08g074870.1.1 (e_value=2e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:56182191-56186322 transcript_region:SL2.40ch08:56182191..56186322- go_terms:GO:0005515 functional_description:"Carboxyl-terminal proteinase (AHRD V1 ***- B6SXW9_MAIZE); contains Interpro domain(s) IPR004314 Protein of unknown function DUF239, plant "; GO:0005515 NbS00011558g0002.1 protein NbS00011558g0005.1 protein NbS00011558g0006.1 protein NbC24259035g0001.1 protein ; (*GB) gi|255547836|ref|XP_002514975.1| (e_value=7e-39) protein phosphatase 2a, regulatory subunit, putative [Ricinus communis];; (*SWP) sp|Q9LU89|2A5N_ARATH (e_value=3e-33) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1;; (*TAIR) AT3G26020.3 (e_value=1e-34) | Symbols: | Protein phosphatase 2A regulatory B subunit family protein | chr3:9514363-9516585 FORWARD LENGTH=512;; (*ITAG) Solyc02g093800.2.1 (e_value=3e-42) genomic_reference:SL2.40ch02 gene_region:49088997-49094293 transcript_region:SL2.40ch02:49088997..49094293- go_terms:GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A regulatory subunit delta 1 isoform (AHRD V1 ***- Q0CAR1_ASPTN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0019901 NbS00017391g0004.1 protein NbS00017391g0006.1 protein NbS00006790g0005.1 protein NbS00009077g0006.1 protein NbS00003173g0006.1 protein NbS00029127g0003.1 protein NbS00006943g0003.1 protein NbS00011569g0001.1 protein NbS00055694g0001.1 protein NbS00017088g0005.1 protein NbS00060066g0002.1 protein ; (*ITAG) Solyc08g074500.2.1 (e_value=5e-14) genomic_reference:SL2.40ch08 gene_region:55766335-55779927 transcript_region:SL2.40ch08:55766335..55779927- go_terms:GO:0004003 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_HUMAN); contains Interpro domain(s) IPR000330 SNF2-related "; GO:0004003 NbS00060024g0001.1 protein ; (*GB) gi|326524968|dbj|BAK04420.1| (e_value=6e-15) predicted protein [Hordeum vulgare subsp. vulgare];; (*TAIR) AT2G22620.1 (e_value=1e-14) | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677;; (*ITAG) Solyc11g011280.1.1 (e_value=2e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:4329554-4331356 transcript_region:SL2.40ch11:4329554..4331356+ go_terms:GO:0030246 functional_description:"LG127/30 like gene (AHRD V1 **-- Q9SZK3_ARATH); contains Interpro domain(s) IPR008979 Galactose-binding like "; GO:0030246 NbS00012880g0006.1 protein NbS00040248g0011.1 protein NbS00040248g0012.1 protein ; (*GB) gi|225433894|ref|XP_002266580.1| (e_value=2e-15) PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera];; (*ITAG) Solyc06g082100.2.1 (e_value=1e-19) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00013879g0020.1 protein NbS00016903g0012.1 protein NbS00016903g0009.1 protein NbS00015270g0003.1 protein NbS00015745g0001.1 protein NbS00013679g0005.1 protein NbS00020580g0003.1 protein NbS00004416g0005.1 protein NbS00004416g0006.1 protein NbS00022150g0002.1 protein NbS00012737g0008.1 protein ; (*GB) gi|359475153|ref|XP_002281272.2| (e_value=1e-33) PREDICTED: serine/threonine-protein kinase SMG1 [Vitis vinifera];; (*ITAG) Solyc01g109080.2.1 (e_value=9e-69) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbS00002765g0011.1 protein NbS00002765g0015.1 protein NbS00002765g0018.1 protein NbS00027519g0001.1 protein NbS00012161g0007.1 protein NbS00012161g0010.1 protein NbS00024411g0004.1 protein ; (*ITAG) Solyc07g042790.1.1 (e_value=5e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53607997-53618970 transcript_region:SL2.40ch07:53607997..53618970+ functional_description:"Helicase-like protein (AHRD V1 ***- Q9AYF0_ORYSJ); contains Interpro domain(s) IPR010285 Protein of unknown function DUF889, eukaryote "; NbS00024411g0008.1 protein ; (*GB) gi|224173152|ref|XP_002339733.1| (e_value=3e-26) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9SFW5|AEE21_ARATH (e_value=6e-19) Probable acyl-activating enzyme 21 OS=Arabidopsis thaliana GN=AEE21 PE=3 SV=1;; (*TAIR) AT1G76290.1 (e_value=5e-20) | Symbols: | AMP-dependent synthetase and ligase family protein | chr1:28623443-28625408 REVERSE LENGTH=546;; (*ITAG) Solyc02g082910.2.1 (e_value=7e-32) genomic_reference:SL2.40ch02 gene_region:41119400-41123802 transcript_region:SL2.40ch02:41119400..41123802- go_terms:GO:0016208,GO:0018858 functional_description:"Acyl-CoA synthetase/AMP-acid ligase II (AHRD V1 **** D0C359_9GAMM); contains Interpro domain(s) IPR000873 AMP-dependent synthetase and ligase "; GO:0016208,GO:0018858 NbS00006390g0002.1 protein NbS00002496g0011.1 protein NbS00002496g0012.1 protein NbS00002496g0020.1 protein NbS00002496g0022.1 protein NbS00013512g0001.1 protein NbS00013512g0102.1 protein NbS00013512g0103.1 protein NbS00004532g0002.1 protein NbC24137744g0001.1 protein ; (*GB) gi|297744733|emb|CBI37995.3| (e_value=3e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9SIV5|C3H19_ARATH (e_value=6e-31) Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana GN=At2g16485/At2g16480/At2g16470 PE=1 SV=3;; (*TAIR) AT2G16485.1 (e_value=4e-32) | Symbols: | nucleic acid binding;zinc ion binding;DNA binding | chr2:7137269-7145222 REVERSE LENGTH=1773;; (*ITAG) Solyc11g062220.1.1 (e_value=8e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:46217108-46227554 transcript_region:SL2.40ch11:46217108..46227554+ go_terms:GO:0005634,GO:0008270 functional_description:"Novel protein containing a PHD-finger domain (Fragment) (AHRD V1 *--- Q07G27_XENTR); contains Interpro domain(s) IPR018144 Plus-3 domain, subgroup "; GO:0005634,GO:0008270 NbS00008346g0011.1 protein NbS00008346g0012.1 protein NbS00008346g0013.1 protein NbS00008346g0006.1 protein NbS00014002g0002.1 protein NbS00014002g0003.1 protein NbS00014002g0005.1 protein NbS00014002g0111.1 protein NbS00014002g0115.1 protein NbS00014002g0119.1 protein NbS00014002g0108.1 protein NbS00003264g0001.1 protein NbS00020061g0007.1 protein NbS00020061g0008.1 protein NbS00036404g0002.1 protein NbS00036404g0003.1 protein NbS00024356g0002.1 protein NbS00053840g0012.1 protein NbS00053840g0008.1 protein ; (*GB) gi|221043674|dbj|BAH13514.1| (e_value=3e-36) unnamed protein product [Homo sapiens]; NbS00053840g0010.1 protein NbS00017563g0003.1 protein NbS00011283g0004.1 protein ; (*ITAG) Solyc09g074290.1.1 (e_value=1e-20) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:61580158-61581582 transcript_region:SL2.40ch09:61580158..61581582- go_terms:GO:0008134 functional_description:"Ankyrin repeat-containing protein (AHRD V1 **-- D3BAQ3_POLPA); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0008134 NbS00000660g0005.1 protein NbS00038031g0002.1 protein NbC23701425g0001.1 protein ; (*GB) gi|242060240|ref|XP_002451409.1| (e_value=5e-18) hypothetical protein SORBIDRAFT_04g001560 [Sorghum bicolor];; (*SWP) sp|Q9FIA1|GDL87_ARATH (e_value=2e-16) GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1;; (*TAIR) AT5G55050.1 (e_value=1e-17) | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:22337745-22339741 FORWARD LENGTH=376;; (*ITAG) Solyc07g064730.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:63980703-63984441 transcript_region:SL2.40ch07:63980703..63984441+ go_terms:GO:0004091 functional_description:"GDSL esterase/lipase At5g55050 (AHRD V1 ***- GDL87_ARATH); contains Interpro domain(s) IPR001087 Lipase, GDSL "; GO:0004091 NbS00047151g0005.1 protein NbS00047151g0006.1 protein NbS00008447g0006.1 protein NbS00043142g0004.1 protein NbS00043142g0005.1 protein NbS00043142g0006.1 protein NbS00009465g0008.1 protein NbS00035432g0001.1 protein NbS00004757g0004.1 protein NbS00041123g0006.1 protein ; (*GB) gi|255563080|ref|XP_002522544.1| (e_value=1e-11) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc10g008730.2.1 (e_value=5e-15) genomic_reference:SL2.40ch10 gene_region:2802327-2803208 transcript_region:SL2.40ch10:2802327..2803208- functional_description:"Unknown Protein (AHRD V1)"; NbS00042997g0005.1 protein NbS00042997g0010.1 protein ; (*GB) gi|351723385|ref|NP_001237277.1| (e_value=1e-23) uncharacterized protein LOC100305828 [Glycine max];; (*TAIR) AT4G25330.1 (e_value=2e-14) | Symbols: | unknown protein; Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12957834-12958683 FORWARD LENGTH=229;; (*ITAG) Solyc07g045320.2.1 (e_value=5e-54) genomic_reference:SL2.40ch07 gene_region:55743299-55748161 transcript_region:SL2.40ch07:55743299..55748161+ functional_description:"Unknown Protein (AHRD V1)"; NbS00031036g0012.1 protein NbS00031036g0007.1 protein NbS00040004g0005.1 protein NbS00008145g0001.1 protein ; (*ITAG) Solyc08g068840.2.1 (e_value=4e-39) genomic_reference:SL2.40ch08 gene_region:55135933-55140666 transcript_region:SL2.40ch08:55135933..55140666- go_terms:GO:0005634 functional_description:"Transcription factor IIIB 90 kDa subunit (AHRD V1 *-*- TF3B_HUMAN); contains Interpro domain(s) IPR011665 Brf1-like TBP-binding "; GO:0005634 NbS00011666g0005.1 protein NbS00011666g0006.1 protein NbS00005908g0004.1 protein NbS00000450g0104.1 protein NbS00011466g0005.1 protein NbS00049855g0003.1 protein NbS00049855g0004.1 protein NbS00011541g0003.1 protein ; (*GB) gi|7801660|emb|CAB91581.1| (e_value=8e-14) putative protein [Arabidopsis thaliana]; NbS00011541g0006.1 protein ; (*GB) gi|149676198|dbj|BAF64710.1| (e_value=7e-20) putative transposase [Ipomoea tricolor]; NbS00038749g0001.1 protein ; (*GB) gi|89280648|ref|YP_514865.1| (e_value=1e-29) cytochrome f [Solanum lycopersicum];; (*SWP) sp|Q2VEG4|CYF_SOLTU (e_value=4e-31) Apocytochrome f OS=Solanum tuberosum GN=petA PE=3 SV=1;; (*ITAG) ATCG00540.1 (e_value=6e-29) | Symbols: PETA | photosynthetic electron transfer A | chrC:61657-62619 FORWARD LENGTH=320;; (*ITAG) Solyc01g007380.1.1 (e_value=2e-32) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch01 gene_region:1859332-1860294 transcript_region:SL2.40ch01:1859332..1860294+ go_terms:GO:0031361 functional_description:"Apocytochrome f (AHRD V1 ***- D3WBH0_9AQUA); contains Interpro domain(s) IPR002325 Cytochrome f "; GO:0031361 NbS00011291g0004.1 protein NbS00008064g0005.1 protein NbS00017138g0001.1 protein NbS00018031g0001.1 protein NbS00006407g0004.1 protein NbS00011390g0003.1 protein NbS00011390g0004.1 protein NbS00011390g0005.1 protein NbS00002211g0010.1 protein NbS00032856g0001.1 protein NbS00060580g0002.1 protein ; (*GB) gi|255561779|ref|XP_002521899.1| (e_value=3e-84) transporter, putative [Ricinus communis];; (*SWP) sp|Q54ZW0|PHG1B_DICDI (e_value=2e-36) Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1;; (*TAIR) AT2G01970.1 (e_value=8e-80) | Symbols: | Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592;; (*ITAG) Solyc04g014570.2.1 (e_value=9e-81) genomic_reference:SL2.40ch04 gene_region:4832869-4838038 transcript_region:SL2.40ch04:4832869..4838038- go_terms:GO:0005515,GO:0004888 functional_description:"Transmembrane 9 superfamily protein member 1 (AHRD V1 **** B6TZ24_MAIZE); contains Interpro domain(s) IPR004240 Nonaspanin (TM9SF) "; GO:0005515,GO:0004888 NbS00032174g0005.1 protein NbS00004802g0019.1 protein NbS00004802g0301.1 protein NbS00024666g0005.1 protein NbS00024666g0006.1 protein NbS00039624g0006.1 protein NbS00017114g0004.1 protein NbS00001202g0005.1 protein NbS00005977g0006.1 protein NbS00005977g0007.1 protein NbS00002881g0005.1 protein NbS00017415g0004.1 protein ; (*GB) gi|223943787|gb|ACN25977.1| (e_value=4e-29) unknown [Zea mays]; NbS00001761g0003.1 protein NbS00001761g0005.1 protein NbS00014674g0002.1 protein ; (*GB) gi|225450603|ref|XP_002282328.1| (e_value=2e-23) PREDICTED: uncharacterized protein LOC100266617 [Vitis vinifera];; (*TAIR) AT1G56420.1 (e_value=2e-23) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:21122772-21124234 REVERSE LENGTH=183;; (*ITAG) Solyc02g085920.2.1 (e_value=3e-26) genomic_reference:SL2.40ch02 gene_region:43273017-43276340 transcript_region:SL2.40ch02:43273017..43276340- functional_description:"Homology to unknown gene (AHRD V1 *-*- Q00YZ4_OSTTA)"; NbS00017409g0001.1 protein NbS00009023g0003.1 protein NbS00003254g0001.1 protein NbS00045053g0003.1 protein NbS00019662g0005.1 protein NbS00021274g0014.1 protein NbS00021274g0015.1 protein NbS00021101g0005.1 protein NbS00021101g0006.1 protein NbS00014365g0004.1 protein NbS00014405g0005.1 protein NbS00014405g0007.1 protein NbS00014405g0008.1 protein NbS00012458g0001.1 protein ; (*GB) gi|113205246|gb|AAT39963.2| (e_value=2e-15) Polyprotein, putative [Solanum demissum]; NbS00006415g0006.1 protein NbS00010517g0005.1 protein NbS00061418g0003.1 protein NbS00044364g0004.1 protein NbS00008666g0003.1 protein ; (*GB) gi|358248438|ref|NP_001239626.1| (e_value=1e-37) uncharacterized protein LOC100783361 [Glycine max];; (*SWP) sp|Q9SJF3|DCP1_ARATH (e_value=4e-37) mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2;; (*TAIR) AT1G08370.1 (e_value=3e-38) | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367;; (*ITAG) Solyc01g009390.2.1 (e_value=3e-41) genomic_reference:SL2.40ch01 gene_region:3594868-3601273 transcript_region:SL2.40ch01:3594868..3601273- functional_description:"MRNA decapping enzyme (AHRD V1 *-*- Q45NB8_XENLA); contains Interpro domain(s) IPR010334 Dcp1-like decapping "; NbS00008666g0004.1 protein NbS00012412g0003.1 protein NbS00010950g0017.1 protein NbS00010950g0008.1 protein NbS00010950g0206.1 protein NbS00010950g0209.1 protein NbS00013942g0003.1 protein NbS00000718g0011.1 protein NbS00011530g0007.1 protein NbS00013295g0006.1 protein ; (*GB) gi|356496457|ref|XP_003517084.1| (e_value=5e-68) PREDICTED: uncharacterized transporter lpg1691-like [Glycine max];; (*TAIR) AT1G31830.2 (e_value=1e-62) | Symbols: | Amino acid permease family protein | chr1:11418875-11420314 REVERSE LENGTH=479;; (*ITAG) Solyc08g075710.2.1 (e_value=6e-78) genomic_reference:SL2.40ch08 gene_region:57004882-57011338 transcript_region:SL2.40ch08:57004882..57011338+ go_terms:GO:0016020 functional_description:"Amino acid permease-like protein (Fragment) (AHRD V1 *-*- B2ZME2_HELPE); contains Interpro domain(s) IPR002293 Amino acid/polyamine transporter I "; GO:0016020 NbS00039572g0104.1 protein NbS00039572g0107.1 protein NbS00057275g0001.1 protein NbS00022755g0002.1 protein NbS00043170g0002.1 protein NbS00023636g0002.1 protein NbS00006112g0001.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-19) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00004424g0005.1 protein NbC24678041g0001.1 protein ; (*GB) gi|147801553|emb|CAN77009.1| (e_value=5e-38) hypothetical protein VITISV_036877 [Vitis vinifera];; (*SWP) sp|Q9SXS2|SUT33_ARATH (e_value=3e-38) Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2;; (*TAIR) AT1G23090.1 (e_value=2e-39) | Symbols: AST91, SULTR3;3 | sulfate transporter 91 | chr1:8185238-8188954 REVERSE LENGTH=631;; (*ITAG) Solyc05g007980.2.1 (e_value=2e-41) genomic_reference:SL2.40ch05 gene_region:2404490-2408988 transcript_region:SL2.40ch05:2404490..2408988+ go_terms:GO:0015381 functional_description:"High affinity sulfate transporter 2 (AHRD V1 **** SUT2_STYHA); contains Interpro domain(s) IPR001902 Sulphate anion transporter "; GO:0015381 NbS00027284g0005.1 protein ; (*ITAG) Solyc09g018160.2.1 (e_value=2e-15) genomic_reference:SL2.40ch09 gene_region:13379149-13391907 transcript_region:SL2.40ch09:13379149..13391907+ functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00060929g0001.1 protein ; (*GB) gi|225433583|ref|XP_002271398.1| (e_value=5e-39) PREDICTED: probable sucrose-phosphate synthase 3-like [Vitis vinifera];; (*SWP) sp|O04933|SPSA2_CRAPL (e_value=8e-38) Probable sucrose-phosphate synthase 2 OS=Craterostigma plantagineum GN=SPS2 PE=2 SV=1;; (*TAIR) AT1G04920.1 (e_value=1e-35) | Symbols: ATSPS3F, SPS3F | sucrose phosphate synthase 3F | chr1:1391674-1395756 REVERSE LENGTH=1062;; (*ITAG) Solyc09g092130.2.1 (e_value=2e-41) genomic_reference:SL2.40ch09 gene_region:66617015-66625125 transcript_region:SL2.40ch09:66617015..66625125- go_terms:GO:0005985,GO:0009058 functional_description:"Sucrose phosphate synthase (AHRD V1 ***- D6R6Y5_9LILI); contains Interpro domain(s) IPR012819 Sucrose phosphate synthase, plant "; GO:0005985,GO:0009058 NbS00028915g0008.1 protein NbS00020185g0001.1 protein ; (*GB) gi|317106609|dbj|BAJ53116.1| (e_value=1e-32) JHL07K02.6 [Jatropha curcas];; (*TAIR) AT5G51020.1 (e_value=1e-32) | Symbols: CRL | crumpled leaf | chr5:20745560-20747165 REVERSE LENGTH=269;; (*ITAG) Solyc06g068760.2.1 (e_value=5e-37) genomic_reference:SL2.40ch06 gene_region:39005202-39008697 transcript_region:SL2.40ch06:39005202..39008697+ functional_description:"CRUMPLED LEAF (AHRD V1 ***- Q9FI46_ARATH); contains Interpro domain(s) IPR010404 Protein of unknown function DUF1001 "; NbS00003691g0002.1 protein ; (*GB) gi|255586792|ref|XP_002534012.1| (e_value=3e-15) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G39760.1 (e_value=2e-15) | Symbols: AtHB23, HB23, ZHD10 | homeobox protein 23 | chr5:15911543-15912547 FORWARD LENGTH=334;; (*ITAG) Solyc02g067320.1.1 (e_value=4e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:32098473-32099468 transcript_region:SL2.40ch02:32098473..32099468- go_terms:GO:0003700 functional_description:"Zinc finger-homeodomain protein 1 (Fragment) (AHRD V1 **-- B0LK19_CUCSA); contains Interpro domain(s) IPR006456 ZF-HD homeobox protein Cys/His-rich dimerisation region "; GO:0003700 NbS00044911g0005.1 protein NbS00026289g0005.1 protein NbS00003790g0006.1 protein NbS00009760g0006.1 protein NbS00031891g0003.1 protein ; (*GB) gi|75318818|sp|O82039.1|SPY_PETHY (e_value=7e-49) RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY;; (*SWP) sp|O82039|SPY_PETHY (e_value=2e-50) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1;; (*TAIR) AT3G11540.1 (e_value=9e-29) | Symbols: SPY | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:3632842-3637547 FORWARD LENGTH=914;; (*ITAG) Solyc09g010180.2.1 (e_value=2e-50) genomic_reference:SL2.40ch09 gene_region:3556738-3572844 transcript_region:SL2.40ch09:3556738..3572844+ go_terms:GO:0016262 functional_description:"TPR repeat-containing protein (AHRD V1 ***- B4D9Q4_9BACT); contains Interpro domain(s) IPR001440 Tetratricopeptide TPR-1 "; GO:0016262 NbS00000619g0003.1 protein NbS00018416g0002.1 protein NbS00012248g0004.1 protein ; (*GB) gi|255551153|ref|XP_002516624.1| (e_value=3e-20) conserved hypothetical protein [Ricinus communis]; NbS00012248g0005.1 protein ; (*GB) gi|297740924|emb|CBI31106.3| (e_value=3e-33) unnamed protein product [Vitis vinifera]; NbS00004369g0007.1 protein NbS00011716g0001.1 protein NbS00011716g0003.1 protein NbS00001514g0002.1 protein NbS00001514g0003.1 protein NbS00016020g0005.1 protein NbS00037829g0002.1 protein NbS00029173g0005.1 protein NbS00015892g0009.1 protein NbS00018934g0107.1 protein NbS00023220g0004.1 protein NbS00019382g0003.1 protein NbS00016609g0002.1 protein NbS00008400g0007.1 protein NbS00027310g0011.1 protein NbS00027310g0010.1 protein ; (*GB) gi|224069094|ref|XP_002326273.1| (e_value=3e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT3G08600.1 (e_value=1e-15) | Symbols: | Protein of unknown function (DUF1191) | chr3:2612646-2613596 FORWARD LENGTH=316;; (*ITAG) Solyc06g060520.1.1 (e_value=8e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34932821-34933723 transcript_region:SL2.40ch06:34932821..34933723- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR010605 Protein of unknown function DUF1191 "; NbS00013240g0011.1 protein NbS00013240g0013.1 protein NbS00021740g0003.1 protein NbS00021740g0005.1 protein NbS00021740g0009.1 protein NbS00026507g0006.1 protein ; (*GB) gi|60265616|gb|AAX15955.1| (e_value=3e-71) cinnamyl alcohol dehydrogenase 1 [Nicotiana tabacum];; (*TAIR) AT1G51410.1 (e_value=2e-43) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19059885-19061424 FORWARD LENGTH=325;; (*ITAG) Solyc01g008550.2.1 (e_value=2e-63) genomic_reference:SL2.40ch01 gene_region:2646612-2650332 transcript_region:SL2.40ch01:2646612..2650332- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- B9HNY0_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00013662g0001.1 protein ; (*ITAG) Solyc10g044500.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:22121145-22123546 transcript_region:SL2.40ch10:22121145..22123546- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9ZUM3_ARATH); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; GO:0008270 NbS00056822g0001.1 protein ; (*GB) gi|117949823|sp|Q6L439.2|R1A4_SOLDE (e_value=3e-12) RecName: Full=Putative late blight resistance protein homolog R1A-4;; (*SWP) sp|Q6L439|R1A4_SOLDE (e_value=7e-14) Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2;; (*ITAG) Solyc05g012900.2.1 (e_value=7e-15) genomic_reference:SL2.40ch05 gene_region:6036922-6038155 transcript_region:SL2.40ch05:6036922..6038155+ functional_description:"Lrr, resistance protein fragment"; NbS00015098g0003.1 protein NbS00008263g0004.1 protein NbS00008263g0006.1 protein NbS00021249g0003.1 protein NbS00057323g0001.1 protein NbS00030333g0001.1 protein NbS00014109g0003.1 protein NbS00002878g0002.1 protein NbS00003404g0005.1 protein NbS00003404g0006.1 protein NbS00003659g0105.1 protein NbS00039779g0003.1 protein NbS00058586g0003.1 protein NbS00000652g0004.1 protein NbS00003488g0011.1 protein NbS00003488g0012.1 protein NbS00003488g0010.1 protein NbS00019037g0002.1 protein ; (*GB) gi|255575659|ref|XP_002528729.1| (e_value=5e-17) conserved hypothetical protein [Ricinus communis]; NbS00034842g0003.1 protein NbS00034842g0005.1 protein NbS00049057g0001.1 protein NbS00013847g0004.1 protein NbS00046587g0003.1 protein NbS00049936g0003.1 protein NbS00019576g0002.1 protein NbS00051239g0006.1 protein NbS00037241g0006.1 protein ; (*GB) gi|225433013|ref|XP_002280862.1| (e_value=7e-17) PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Vitis vinifera];; (*SWP) sp|P10967|ACCH3_SOLLC (e_value=4e-15) 1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1;; (*ITAG) Solyc09g089800.1.1 (e_value=3e-35) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:64815047-64816310 transcript_region:SL2.40ch09:64815047..64816310+ go_terms:GO:0009815 functional_description:"1-aminocyclopropane-1-carboxylate oxidase-like protein (AHRD V1 **-* Q9LTH8_ARATH); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0009815 NbS00022988g0003.1 protein NbS00000975g0002.1 protein NbC24436776g0001.1 protein ; (*ITAG) Solyc04g007350.2.1 (e_value=2e-17) genomic_reference:SL2.40ch04 gene_region:1056015-1057246 transcript_region:SL2.40ch04:1056015..1057246- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012438 Protein of unknown function DUF1639 "; NbS00033364g0007.1 protein NbS00027601g0005.1 protein NbS00027601g0007.1 protein NbS00032130g0004.1 protein NbS00002013g0008.1 protein NbC23728603g0001.1 protein ; (*GB) gi|255577300|ref|XP_002529531.1| (e_value=2e-31) serine hydroxymethyltransferase, putative [Ricinus communis];; (*SWP) sp|Q54Z26|GLYC1_DICDI (e_value=4e-26) Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1;; (*TAIR) AT1G36370.1 (e_value=2e-32) | Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598;; (*ITAG) Solyc01g104000.2.1 (e_value=5e-36) genomic_reference:SL2.40ch01 gene_region:84236401-84241786 transcript_region:SL2.40ch01:84236401..84241786+ go_terms:GO:0006563,GO:0030170 functional_description:"Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase "; GO:0006563,GO:0030170 NbS00004059g0006.1 protein NbS00014602g0004.1 protein NbS00014602g0006.1 protein NbS00000405g0003.1 protein ; (*GB) gi|147853302|emb|CAN78544.1| (e_value=3e-19) hypothetical protein VITISV_028082 [Vitis vinifera]; NbS00000405g0005.1 protein NbS00000405g0009.1 protein NbS00019828g0003.1 protein NbC26289840g0001.1 protein ; (*ITAG) Solyc10g081390.1.1 (e_value=2e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch10 gene_region:61794824-61796520 transcript_region:SL2.40ch10:61794824..61796520+ functional_description:"Unknown Protein (AHRD V1)"; NbS00013789g0001.1 protein NbS00013789g0112.1 protein NbS00013789g0113.1 protein NbS00013789g0108.1 protein NbS00041861g0003.1 protein ; (*ITAG) Solyc01g106730.1.1 (e_value=2e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86237223-86237888 transcript_region:SL2.40ch01:86237223..86237888- go_terms:GO:0017075 functional_description:"MADS box transcription factor 1 (AHRD V1 *-*- D9IFM1_ONCHC); contains Interpro domain(s) IPR002100 Transcription factor, MADS-box "; GO:0017075 NbS00023190g0002.1 protein NbS00025702g0005.1 protein NbS00005887g0005.1 protein NbS00005887g0010.1 protein NbS00006299g0002.1 protein NbC25778173g0001.1 protein ; (*GB) gi|224078580|ref|XP_002305562.1| (e_value=3e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WRB0|FACR5_ARATH (e_value=5e-19) Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1;; (*TAIR) AT3G44550.1 (e_value=3e-20) | Symbols: FAR5 | fatty acid reductase 5 | chr3:16138060-16141409 FORWARD LENGTH=496;; (*ITAG) Solyc01g104200.2.1 (e_value=7e-31) genomic_reference:SL2.40ch01 gene_region:84406092-84409241 transcript_region:SL2.40ch01:84406092..84409241- go_terms:GO:0016628,GO:0080019 functional_description:"Fatty acyl coA reductase (AHRD V1 **** Q8L4M0_WHEAT); contains Interpro domain(s) IPR013120 Male sterility, NAD-binding "; GO:0016628,GO:0080019 NbS00012437g0008.1 protein NbS00018137g0006.1 protein NbS00021992g0003.1 protein NbS00000053g0012.1 protein ; (*GB) gi|13631844|sp|P92792.1|TOM20_SOLTU (e_value=1e-19) RecName: Full=Mitochondrial import receptor subunit TOM20; AltName: Full=Translocase of outer membrane 20 kDa subunit;; (*SWP) sp|P92792|TOM20_SOLTU (e_value=4e-21) Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1;; (*TAIR) AT3G27080.1 (e_value=5e-15) | Symbols: TOM20-3 | translocase of outer membrane 20 kDa subunit 3 | chr3:9985212-9986560 REVERSE LENGTH=202;; (*ITAG) Solyc02g094140.2.1 (e_value=1e-23) genomic_reference:SL2.40ch02 gene_region:49346265-49353364 transcript_region:SL2.40ch02:49346265..49353364+ go_terms:GO:0015450 functional_description:"Mitochondrial import receptor subunit TOM20 (AHRD V1 ***- B3TM32_ELAGV); contains Interpro domain(s) IPR010547 Plant specific mitochondrial import receptor subunit TOM20 "; GO:0015450 NbS00036350g0002.1 protein NbS00003204g0001.1 protein ; (*GB) gi|255582409|ref|XP_002531993.1| (e_value=5e-31) cytochrome-c oxidase, putative [Ricinus communis];; (*SWP) sp|Q9T070|COX6A_ARATH (e_value=1e-26) Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana GN=COX6A PE=2 SV=1;; (*TAIR) AT4G37830.1 (e_value=8e-28) | Symbols: | cytochrome c oxidase-related | chr4:17787672-17788762 REVERSE LENGTH=102;; (*ITAG) Solyc02g091880.2.1 (e_value=1e-35) genomic_reference:SL2.40ch02 gene_region:47688583-47691682 transcript_region:SL2.40ch02:47688583..47691682+ go_terms:GO:0030234,GO:0004129 functional_description:"Cytochrome c oxidase subunit VIa family protein expressed (AHRD V1 **** Q7XZW4_ORYSJ); contains Interpro domain(s) IPR001349 Cytochrome c oxidase, subunit VIa "; GO:0030234,GO:0004129 NbS00009148g0004.1 protein ; (*GB) gi|147864082|emb|CAN81119.1| (e_value=2e-16) hypothetical protein VITISV_030389 [Vitis vinifera];; (*ITAG) Solyc09g057880.2.1 (e_value=1e-26) genomic_reference:SL2.40ch09 gene_region:47291339-47302811 transcript_region:SL2.40ch09:47291339..47302811+ functional_description:"Protein FAR1-RELATED SEQUENCE 5 (AHRD V1 *--- FRS5_ARATH); contains Interpro domain(s) IPR004330 Transcription factor, FAR1-related "; NbS00061141g0001.1 protein ; (*GB) gi|225460696|ref|XP_002270347.1| (e_value=1e-20) PREDICTED: uncharacterized protein LOC100243534 [Vitis vinifera];; (*ITAG) Solyc11g017200.1.1 (e_value=1e-37) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8016371-8020103 transcript_region:SL2.40ch11:8016371..8020103- go_terms:GO:0005488 functional_description:"TPR repeat (AHRD V1 *--- Q31NR5_SYNE7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00040076g0005.1 protein NbS00001645g0007.1 protein ; (*GB) gi|380853848|gb|AFE88231.1| (e_value=1e-48) beta-keto-ACP synthase [Nicotiana tabacum];; (*SWP) sp|P49243|FABH_ARATH (e_value=4e-40) 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic OS=Arabidopsis thaliana GN=At1g62640 PE=2 SV=2;; (*TAIR) AT1G62640.2 (e_value=3e-41) | Symbols: KAS III | 3-ketoacyl-acyl carrier protein synthase III | chr1:23192502-23194737 FORWARD LENGTH=404;; (*ITAG) Solyc08g006560.2.1 (e_value=2e-48) genomic_reference:SL2.40ch08 gene_region:1170545-1174964 transcript_region:SL2.40ch08:1170545..1174964+ go_terms:GO:0008137 functional_description:"3-oxoacyl- (AHRD V1 ***- A8YCB5_MICAE); contains Interpro domain(s) IPR004655 Beta-ketoacyl-acyl carrier protein synthase III (FabH) "; GO:0008137 NbS00034380g0004.1 protein NbS00000060g0012.1 protein NbS00000060g0013.1 protein NbS00029189g0001.1 protein NbS00044287g0002.1 protein NbS00061878g0001.1 protein ; (*GB) gi|187940726|gb|ACD39464.1| (e_value=3e-15) BEL5 protein [Solanum palustre];; (*ITAG) Solyc06g074120.2.1 (e_value=8e-18) genomic_reference:SL2.40ch06 gene_region:42231957-42236664 transcript_region:SL2.40ch06:42231957..42236664+ go_terms:GO:0046982,GO:0042803 functional_description:"BEL1-like homeodomain protein 1 (AHRD V1 **-- BLH1_ARATH); contains Interpro domain(s) IPR001356 Homeobox IPR017970 Homeobox, conserved site "; GO:0046982,GO:0042803 NbS00050060g0003.1 protein NbS00050060g0004.1 protein NbS00009534g0001.1 protein NbS00009534g0002.1 protein NbS00007537g0209.1 protein NbS00007537g0210.1 protein NbC25915643g0001.1 protein ; (*ITAG) Solyc02g078660.2.1 (e_value=2e-53) genomic_reference:SL2.40ch02 gene_region:37901791-37906221 transcript_region:SL2.40ch02:37901791..37906221- functional_description:"Phosphoinositide-binding clathrin adaptor N-terminal Wiscott-Aldrich syndrome C-terminal (AHRD V1 *--- A2Q4Q2_MEDTR)"; NbS00002060g0013.1 protein ; (*GB) gi|224146205|ref|XP_002325921.1| (e_value=1e-24) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LYK9|RS263_ARATH (e_value=3e-23) 40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1;; (*TAIR) AT3G56340.1 (e_value=2e-24) | Symbols: | Ribosomal protein S26e family protein | chr3:20892309-20893343 REVERSE LENGTH=130;; (*ITAG) Solyc06g007470.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:1479427-1482088 transcript_region:SL2.40ch06:1479427..1482088- go_terms:GO:0005840 functional_description:"40S ribosomal protein S26 (AHRD V1 ***- B6TXN6_MAIZE); contains Interpro domain(s) IPR000892 Ribosomal protein S26e "; GO:0005840 NbS00002990g0003.1 protein NbS00008158g0025.1 protein NbS00008232g0002.1 protein NbS00023100g0105.1 protein NbS00005355g0111.1 protein NbS00005355g0105.1 protein NbS00005355g0107.1 protein NbS00005355g0108.1 protein NbS00014843g0002.1 protein NbS00006151g0005.1 protein NbS00004890g0007.1 protein NbC23879079g0001.1 protein ; (*GB) gi|356533265|ref|XP_003535186.1| (e_value=2e-47) PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like [Glycine max];; (*SWP) sp|Q8RW96|2A5G_ARATH (e_value=2e-47) Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform OS=Arabidopsis thaliana GN=B'GAMMA PE=1 SV=2;; (*TAIR) AT4G15415.1 (e_value=2e-48) | Symbols: ATB' GAMMA | Protein phosphatase 2A regulatory B subunit family protein | chr4:8817707-8819349 FORWARD LENGTH=522;; (*ITAG) Solyc09g008400.2.1 (e_value=6e-52) genomic_reference:SL2.40ch09 gene_region:1854557-1859965 transcript_region:SL2.40ch09:1854557..1859965- go_terms:GO:0008266,GO:0019901 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_HUMAN); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0008266,GO:0019901 NbC23828907g0001.1 protein ; (*ITAG) Solyc08g068370.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:54667194-54678390 transcript_region:SL2.40ch08:54667194..54678390+ go_terms:GO:0008565 functional_description:"Class E vacuolar protein-sorting machinery protein HSE1 (AHRD V1 *--- HSE1_USTMA); contains Interpro domain(s) IPR018205 VHS subgroup "; GO:0008565 NbS00038138g0004.1 protein NbS00038138g0007.1 protein NbS00038138g0008.1 protein ; (*GB) gi|116047953|gb|ABJ53202.1| (e_value=6e-46) myosin VIII-B [Nicotiana benthamiana];; (*SWP) sp|P08799|MYS2_DICDI (e_value=4e-17) Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3;; (*TAIR) AT3G19960.1 (e_value=3e-31) | Symbols: ATM1 | myosin 1 | chr3:6949787-6956736 FORWARD LENGTH=1166;; (*ITAG) Solyc07g063590.2.1 (e_value=7e-44) genomic_reference:SL2.40ch07 gene_region:63251719-63262181 transcript_region:SL2.40ch07:63251719..63262181+ go_terms:GO:0042803 functional_description:"Myosin-like protein (AHRD V1 ***- Q9LHE9_ARATH); contains Interpro domain(s) IPR001609 Myosin head, motor region "; GO:0042803 NbS00023390g0004.1 protein NbS00023390g0005.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=1e-19) predicted protein [Populus trichocarpa];; (*ITAG) Solyc01g056230.1.1 (e_value=1e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:45501195-45502055 transcript_region:SL2.40ch01:45501195..45502055- functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR005162 Retrotransposon gag protein "; NbS00010615g0004.1 protein NbS00024961g0003.1 protein NbS00024961g0004.1 protein NbS00026220g0101.1 protein NbS00002582g0003.1 protein NbS00002582g0005.1 protein NbS00002582g0006.1 protein NbS00060135g0004.1 protein NbS00060135g0005.1 protein NbS00057886g0001.1 protein ; (*ITAG) Solyc05g012370.2.1 (e_value=2e-20) genomic_reference:SL2.40ch05 gene_region:5634334-5638589 transcript_region:SL2.40ch05:5634334..5638589+ go_terms:GO:0003824 functional_description:"Hydrolase alpha/beta fold family protein (AHRD V1 ***- D7MJQ7_ARALY); contains Interpro domain(s) IPR000639 Epoxide hydrolase-like "; GO:0003824 NbS00004352g0003.1 protein NbS00025358g0003.1 protein NbS00025358g0004.1 protein NbS00027674g0016.1 protein ; (*GB) gi|193290722|gb|ACF17669.1| (e_value=6e-16) putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum];; (*TAIR) AT1G01090.1 (e_value=3e-14) | Symbols: PDH-E1 ALPHA | pyruvate dehydrogenase E1 alpha | chr1:47705-49166 REVERSE LENGTH=428;; (*ITAG) Solyc01g091080.2.1 (e_value=4e-17) genomic_reference:SL2.40ch01 gene_region:76559722-76569026 transcript_region:SL2.40ch01:76559722..76569026- go_terms:GO:0051087 functional_description:"Tubulin-specific chaperone D (AHRD V1 **** C0H9S8_SALSA); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00057570g0001.1 protein NbS00001915g0003.1 protein NbS00013983g0003.1 protein NbS00057160g0003.1 protein NbS00030256g0002.1 protein NbS00030256g0004.1 protein NbS00024408g0004.1 protein NbS00023423g0005.1 protein NbS00009867g0002.1 protein NbS00009867g0006.1 protein NbS00018774g0005.1 protein NbS00018774g0009.1 protein NbS00024349g0002.1 protein NbS00038974g0005.1 protein ; (*GB) gi|255638678|gb|ACU19644.1| (e_value=8e-30) unknown [Glycine max];; (*TAIR) AT3G06483.1 (e_value=1e-28) | Symbols: PDK, ATPDHK | pyruvate dehydrogenase kinase | chr3:1990727-1992581 REVERSE LENGTH=366;; (*ITAG) Solyc01g057210.2.1 (e_value=1e-37) genomic_reference:SL2.40ch01 gene_region:52729784-52733591 transcript_region:SL2.40ch01:52729784..52733591+ go_terms:GO:0004740 functional_description:"Pyruvate dehydrogenase kinase (AHRD V1 **** Q700B0_CICAR); contains Interpro domain(s) IPR018955 Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, mitochondrial "; GO:0004740 NbS00022956g0003.1 protein NbS00009803g0002.1 protein NbS00011094g0209.1 protein NbS00060132g0005.1 protein NbS00005506g0007.1 protein NbS00008029g0005.1 protein NbS00008029g0205.1 protein NbS00005410g0002.1 protein NbS00039119g0001.1 protein NbS00020686g0005.1 protein NbS00023339g0001.1 protein ; (*ITAG) Solyc01g103690.2.1 (e_value=3e-15) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00023339g0002.1 protein NbS00043259g0001.1 protein NbS00040079g0003.1 protein NbS00029454g0012.1 protein NbS00015527g0004.1 protein NbS00058134g0015.1 protein NbS00049234g0002.1 protein NbS00008033g0001.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=2e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=2e-25) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00046218g0006.1 protein NbS00023931g0003.1 protein NbS00005720g0008.1 protein NbS00005720g0009.1 protein NbS00005720g0111.1 protein NbS00005720g0112.1 protein NbS00030795g0004.1 protein NbS00012049g0005.1 protein NbS00019577g0007.1 protein ; (*ITAG) Solyc01g095710.2.1 (e_value=5e-29) genomic_reference:SL2.40ch01 gene_region:78658133-78666458 transcript_region:SL2.40ch01:78658133..78666458+ go_terms:GO:0004004,GO:0005515 functional_description:"ATP-dependent RNA helicase (AHRD V1 *-** Q173G5_AEDAE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004004,GO:0005515 NbS00020427g0005.1 protein NbS00020427g0203.1 protein NbS00017128g0008.1 protein ; (*ITAG) Solyc01g060190.1.1 (e_value=3e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:62573475-62574735 transcript_region:SL2.40ch01:62573475..62574735- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 *-*- Q94HK4_ORYSA); contains Interpro domain(s) IPR006564 Zinc finger, PMZ-type "; GO:0008270 NbC25207939g0001.1 protein ; (*GB) gi|6647900|sp|P93394.1|UPP_TOBAC (e_value=6e-17) RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; AltName: Full=UMP pyrophosphorylase;; (*SWP) sp|P93394|UPP_TOBAC (e_value=2e-18) Uracil phosphoribosyltransferase OS=Nicotiana tabacum GN=UPP PE=2 SV=1;; (*TAIR) AT3G53900.2 (e_value=3e-16) | Symbols: UPP, PYRR | uracil phosphoribosyltransferase | chr3:19956914-19959006 REVERSE LENGTH=296;; (*ITAG) Solyc09g011300.2.1 (e_value=2e-18) genomic_reference:SL2.40ch09 gene_region:4641043-4645919 transcript_region:SL2.40ch09:4641043..4645919+ go_terms:GO:0005515,GO:0004845 functional_description:"Uracil phosphoribosyltransferase (AHRD V1 **** B6U5U2_MAIZE); contains Interpro domain(s) IPR005765 Uracil phosphoribosyl transferase "; GO:0005515,GO:0004845 NbS00002173g0005.1 protein NbS00019313g0005.1 protein NbS00019313g0006.1 protein NbS00049428g0003.1 protein NbS00026672g0001.1 protein NbS00017043g0005.1 protein NbS00017043g0008.1 protein NbS00051686g0004.1 protein NbS00001218g0004.1 protein NbS00029565g0003.1 protein NbS00006215g0006.1 protein NbS00006215g0007.1 protein NbS00028525g0003.1 protein NbS00005821g0004.1 protein NbS00009669g0006.1 protein NbS00009669g0102.1 protein NbS00009669g0211.1 protein NbS00009669g0207.1 protein NbS00009669g0208.1 protein NbS00009669g0209.1 protein NbS00009669g0210.1 protein NbS00040007g0005.1 protein NbS00042717g0008.1 protein NbS00039936g0001.1 protein ; (*ITAG) Solyc02g062410.1.1 (e_value=6e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:28585511-28586459 transcript_region:SL2.40ch02:28585511..28586459- go_terms:GO:0051082,GO:0042802 functional_description:"Nuclear movement protein nudc (AHRD V1 ***- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; GO:0051082,GO:0042802 NbS00048554g0007.1 protein NbS00048554g0009.1 protein ; (*ITAG) Solyc06g073170.1.1 (e_value=9e-15) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch06 gene_region:41474235-41474741 transcript_region:SL2.40ch06:41474235..41474741+ functional_description:"Unknown Protein (AHRD V1)"; NbS00007509g0004.1 protein NbS00007509g0005.1 protein ; (*GB) gi|18203447|sp|Q9SPV5.1|NEC1_NICPL (e_value=3e-19) RecName: Full=Nectarin-1; AltName: Full=Superoxide dismutase [Mn]; Flags: Precursor;; (*SWP) sp|Q9SPV5|NEC1_NICPL (e_value=1e-20) Nectarin-1 OS=Nicotiana plumbaginifolia GN=NEC1 PE=1 SV=1;; (*TAIR) AT1G02335.1 (e_value=1e-14) | Symbols: GL22 | germin-like protein subfamily 2 member 2 precursor | chr1:463979-464876 REVERSE LENGTH=219;; (*ITAG) Solyc01g102380.2.1 (e_value=5e-18) genomic_reference:SL2.40ch01 gene_region:82973903-82974888 transcript_region:SL2.40ch01:82973903..82974888+ go_terms:GO:0045735,GO:0048046 functional_description:"Germin-like protein (AHRD V1 ***- O64439_SOLLC); contains Interpro domain(s) IPR019780 Germin, manganese binding site "; GO:0045735,GO:0048046 NbS00021189g0002.1 protein ; (*GB) gi|359486198|ref|XP_002268959.2| (e_value=2e-30) PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera];; (*TAIR) AT1G14460.1 (e_value=1e-26) | Symbols: | AAA-type ATPase family protein | chr1:4948962-4952750 REVERSE LENGTH=1116;; (*ITAG) Solyc01g102810.2.1 (e_value=4e-36) genomic_reference:SL2.40ch01 gene_region:83273087-83279273 transcript_region:SL2.40ch01:83273087..83279273+ go_terms:GO:0009360,GO:0006468,GO:0006260 functional_description:"DNA polymerase III gamma and tau subunit (AHRD V1 *-*- B5IJD5_9CHRO); contains Interpro domain(s) IPR012763 DNA polymerase III, subunit gamma/ tau "; GO:0009360,GO:0006468,GO:0006260 NbS00021189g0004.1 protein ; (*GB) gi|356531465|ref|XP_003534298.1| (e_value=2e-22) PREDICTED: vacuolar protein sorting-associated protein 25-like [Glycine max];; (*SWP) sp|Q8VZC9|VPS25_ARATH (e_value=1e-21) Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1;; (*TAIR) AT4G19003.1 (e_value=8e-23) | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179;; (*ITAG) Solyc08g076130.2.1 (e_value=2e-26) genomic_reference:SL2.40ch08 gene_region:57326717-57332644 transcript_region:SL2.40ch08:57326717..57332644- go_terms:GO:0005515,GO:0004674 functional_description:"Vacuolar protein sorting protein 25 (AHRD V1 ***- B6SHU1_MAIZE); contains Interpro domain(s) IPR008570 ESCRT-II complex, vps25 subunit "; GO:0005515,GO:0004674 NbS00021189g0005.1 protein NbS00001838g0003.1 protein ; (*GB) gi|255561486|ref|XP_002521753.1| (e_value=2e-18) hydrolase, putative [Ricinus communis];; (*TAIR) AT5G24670.2 (e_value=3e-17) | Symbols: | Cytidine/deoxycytidylate deaminase family protein | chr5:8448880-8451046 FORWARD LENGTH=404;; (*ITAG) Solyc03g026100.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:7892790-7893986 transcript_region:SL2.40ch03:7892790..7893986- go_terms:GO:0046982,GO:0008251 functional_description:"tRNA-specific adenosine deaminase-like protein 3 (AHRD V1 *-** C1BNE2_9MAXI); contains Interpro domain(s) IPR016193 Cytidine deaminase-like "; GO:0046982,GO:0008251 NbS00005483g0105.1 protein NbS00000575g0004.1 protein NbS00022626g0003.1 protein ; (*ITAG) Solyc07g005700.2.1 (e_value=9e-12) genomic_reference:SL2.40ch07 gene_region:577484-584465 transcript_region:SL2.40ch07:577484..584465- go_terms:GO:0008270 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270 NbS00005115g0006.1 protein ; (*GB) gi|2497541|sp|Q40545.1|KPYA_TOBAC (e_value=3e-96) RecName: Full=Pyruvate kinase isozyme A, chloroplastic; Flags: Precursor;; (*SWP) sp|Q40545|KPYA_TOBAC (e_value=1e-97) Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G22960.1 (e_value=1e-39) | Symbols: PKP1, PKP-ALPHA | Pyruvate kinase family protein | chr3:8139369-8141771 FORWARD LENGTH=596;; (*ITAG) Solyc09g082970.2.1 (e_value=5e-82) genomic_reference:SL2.40ch09 gene_region:64040779-64049501 transcript_region:SL2.40ch09:64040779..64049501+ go_terms:GO:0004743 functional_description:"Pyruvate kinase (AHRD V1 **** B9HKC4_POPTR); contains Interpro domain(s) IPR001697 Pyruvate kinase "; GO:0004743 NbS00005115g0008.1 protein NbS00016051g0111.1 protein NbS00016051g0105.1 protein NbS00030302g0003.1 protein NbS00001877g0003.1 protein NbS00023779g0003.1 protein NbS00013803g0004.1 protein NbS00007865g0004.1 protein NbS00027870g0004.1 protein NbS00007276g0007.1 protein NbS00015912g0002.1 protein NbS00000019g0006.1 protein NbS00000019g0008.1 protein NbS00004605g0002.1 protein NbS00004605g0005.1 protein NbS00014811g0102.1 protein NbS00014811g0104.1 protein NbS00014811g0106.1 protein NbS00038526g0004.1 protein NbS00012117g0005.1 protein ; (*GB) gi|316996008|dbj|BAD83458.2| (e_value=1e-16) cytochrome c maturation protein CcmFN [Nicotiana tabacum];; (*SWP) sp|Q04647|CCBS_DAUCA (e_value=3e-17) Probable cytochrome c biosynthesis protein OS=Daucus carota PE=2 SV=1;; (*ITAG) ATMG00960.1 (e_value=1e-18) | Symbols: CCB203 | Cytochrome C assembly protein | chrM:256865-257476 REVERSE LENGTH=203;; (*ITAG) Solyc00g049210.1.1 (e_value=1e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch00 gene_region:13605545-13607314 transcript_region:SL2.40ch00:13605545..13607314- go_terms:GO:0016020 functional_description:"Cytochrome c-type biogenesis protein CcmF (AHRD V1 *-*- Q1ZIX1_9GAMM); contains Interpro domain(s) IPR003569 Cytochrome c-type biogenesis protein CcbS "; GO:0016020 NbS00005716g0001.1 protein NbS00027422g0003.1 protein ; (*GB) gi|54606686|dbj|BAD66709.1| (e_value=5e-15) orf177 [Beta vulgaris subsp. vulgaris]; NbS00027422g0004.1 protein NbS00014067g0001.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=9e-20) hypothetical protein [Nicotiana tabacum]; NbS00030164g0002.1 protein ; (*ITAG) Solyc06g060030.1.1 (e_value=6e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:34348153-34350204 transcript_region:SL2.40ch06:34348153..34350204- go_terms:GO:0003676,GO:0015074,GO:0008270 functional_description:"Transposon Ty1-BR Gag-Pol polyprotein (AHRD V1 *-*- YB12B_YEAST); contains Interpro domain(s) IPR001584 Integrase, catalytic core "; GO:0003676,GO:0015074,GO:0008270 NbS00030164g0004.1 protein NbS00010453g0006.1 protein NbS00038086g0104.1 protein NbS00000092g0011.1 protein ; (*ITAG) Solyc00g012310.1.1 (e_value=7e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10454496-10455623 transcript_region:SL2.40ch00:10454496..10455623- go_terms:GO:0006278 functional_description:"Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) (AHRD V1 **-- PO21_NASVI); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; GO:0006278 NbS00000092g0019.1 protein NbS00000545g0003.1 protein NbS00058694g0003.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=1e-21) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=4e-23) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.1 (e_value=9e-24) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1009;; (*ITAG) Solyc09g010060.2.1 (e_value=4e-23) genomic_reference:SL2.40ch09 gene_region:3460580-3468455 transcript_region:SL2.40ch09:3460580..3468455+ go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin (AHRD V1 ***- Q86ZA8_COCHE); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00058694g0004.1 protein ; (*ITAG) Solyc01g099580.1.1 (e_value=1e-22) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:81533868-81537652 transcript_region:SL2.40ch01:81533868..81537652- functional_description:"Desiccation-related protein PCC13-62 (AHRD V1 *-*- B6TNA6_MAIZE); contains Interpro domain(s) IPR011424 C1-like "; NbS00058694g0005.1 protein NbS00015480g0005.1 protein NbS00014477g0018.1 protein NbS00019534g0004.1 protein NbS00035598g0005.1 protein ; (*GB) gi|255568281|ref|XP_002525115.1| (e_value=2e-24) ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|O82043|ILV5_PEA (e_value=2e-25) Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1;; (*TAIR) AT3G58610.3 (e_value=3e-26) | Symbols: | ketol-acid reductoisomerase | chr3:21671561-21674639 FORWARD LENGTH=591;; (*ITAG) Solyc12g010840.1.1 (e_value=9e-27) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:3773065-3778565 transcript_region:SL2.40ch12:3773065..3778565+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"Ketol-acid reductoisomerase (AHRD V1 ***- D7LW57_ARALY); contains Interpro domain(s) IPR016206 Ketol-acid reductoisomerase, plant "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00004355g0006.1 protein NbS00013851g0005.1 protein NbS00043532g0003.1 protein NbS00043532g0005.1 protein NbS00025184g0003.1 protein NbS00019542g0003.1 protein NbS00000972g0008.1 protein NbS00061997g0002.1 protein NbS00016785g0006.1 protein NbS00016785g0007.1 protein NbS00016785g0008.1 protein NbS00028002g0008.1 protein NbS00028002g0010.1 protein NbS00017147g0001.1 protein NbC24089638g0001.1 protein ; (*GB) gi|225464790|ref|XP_002268064.1| (e_value=1e-26) PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera];; (*SWP) sp|O81028|PP171_ARATH (e_value=4e-18) Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=2 SV=1;; (*TAIR) AT2G26790.1 (e_value=3e-19) | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:11425270-11427669 REVERSE LENGTH=799;; (*ITAG) Solyc05g012920.1.1 (e_value=6e-34) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:6046907-6049585 transcript_region:SL2.40ch05:6046907..6049585- go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LEU3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00017749g0007.1 protein NbS00017749g0009.1 protein ; (*GB) gi|261330851|emb|CBH13836.1| (e_value=2e-13) T. brucei spp.-specific protein, (fragment) [Trypanosoma brucei gambiense DAL972];; (*ITAG) Solyc09g005350.2.1 (e_value=6e-15) genomic_reference:SL2.40ch09 gene_region:270972-276505 transcript_region:SL2.40ch09:270972..276505+ go_terms:GO:0051082 functional_description:"Chaperone protein dnaJ (AHRD V1 ***- DNAJ_RHOCS); contains Interpro domain(s) IPR003095 Heat shock protein DnaJ "; GO:0051082 NbS00017749g0010.1 protein NbS00016481g0001.1 protein NbC25934922g0002.1 protein NbS00003455g0002.1 protein NbS00003455g0005.1 protein NbS00024136g0007.1 protein ; (*GB) gi|74267246|dbj|BAE44121.1| (e_value=8e-20) protein phosphatase 2C [Nicotiana benthamiana];; (*ITAG) Solyc06g007190.2.1 (e_value=2e-20) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00005035g0002.1 protein NbS00005035g0003.1 protein NbS00015231g0004.1 protein NbS00012475g0001.1 protein NbS00017468g0008.1 protein NbS00017468g0010.1 protein NbS00012749g0104.1 protein NbS00017675g0011.1 protein ; (*ITAG) Solyc11g069560.1.1 (e_value=9e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51259057-51262308 transcript_region:SL2.40ch11:51259057..51262308- functional_description:"Glycosyltransferase family protein-like protein (Fragment) (AHRD V1 *--- B3G4Q4_ADIVA)"; NbS00017675g0012.1 protein NbS00027830g0006.1 protein NbS00018783g0009.1 protein ; (*ITAG) Solyc03g007170.2.1 (e_value=1e-12) genomic_reference:SL2.40ch03 gene_region:1743953-1748364 transcript_region:SL2.40ch03:1743953..1748364- go_terms:GO:0005528 functional_description:"FK506-binding protein 4 (EC 5.2.1.8)(Peptidyl-prolyl cis-trans isomerase)(PPIase)(Rotamase) (AHRD V1 *-** C8V696_EMENI); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "; GO:0005528 NbS00060449g0004.1 protein ; (*ITAG) Solyc12g087920.1.1 (e_value=8e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:61872727-61876078 transcript_region:SL2.40ch12:61872727..61876078- go_terms:GO:0004672,GO:0005515 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004672,GO:0005515 NbS00027894g0002.1 protein NbS00014210g0005.1 protein NbS00008931g0004.1 protein NbS00011939g0001.1 protein NbS00013306g0005.1 protein NbS00006622g0006.1 protein NbC23700237g0001.1 protein ; (*ITAG) Solyc04g051870.1.1 (e_value=8e-23) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:50322948-50324021 transcript_region:SL2.40ch04:50322948..50324021- go_terms:GO:0004842 functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7M8L0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0004842 NbS00019957g0004.1 protein ; (*GB) gi|297745614|emb|CBI40779.3| (e_value=2e-20) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q41140|PFPA_RICCO (e_value=2e-18) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha OS=Ricinus communis GN=PFP-ALPHA PE=3 SV=1;; (*TAIR) AT1G20950.1 (e_value=3e-20) | Symbols: | Phosphofructokinase family protein | chr1:7297467-7301336 REVERSE LENGTH=614;; (*ITAG) Solyc12g095760.1.1 (e_value=7e-23) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63231944-63238575 transcript_region:SL2.40ch12:63231944..63238575- go_terms:GO:0005576,GO:0005945 functional_description:"Diphosphate--fructose-6-phosphate 1-phosphotransferase (AHRD V1 ***- C8PT93_9SPIO); contains Interpro domain(s) IPR011183 Pyrophosphate-dependent phosphofructokinase PfpB "; GO:0005576,GO:0005945 NbS00019957g0005.1 protein NbS00003413g0009.1 protein ; (*ITAG) Solyc11g010240.1.1 (e_value=1e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3293989-3299838 transcript_region:SL2.40ch11:3293989..3299838- go_terms:GO:0003714 functional_description:"Protein SCAI (AHRD V1 ***- SCAI_HUMAN)"; GO:0003714 NbC23941503g0001.1 protein ; (*GB) gi|224081487|ref|XP_002306431.1| (e_value=9e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT2G17550.2 (e_value=4e-15) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 215 Blast hits to 205 proteins in 55 species: Archae - 5; Bacteria - 0; Metazoa - 50; Fungi - 10; Plants - 99; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr2:7634495-7636770 REVERSE LENGTH=705;; (*ITAG) Solyc02g082680.2.1 (e_value=2e-38) genomic_reference:SL2.40ch02 gene_region:40902205-40907678 transcript_region:SL2.40ch02:40902205..40907678- functional_description:"Unknown Protein (AHRD V1)"; NbS00028184g0003.1 protein NbS00050890g0003.1 protein NbS00054320g0004.1 protein NbS00054320g0005.1 protein NbS00001024g0003.1 protein NbS00016708g0004.1 protein NbS00016018g0016.1 protein NbS00016018g0008.1 protein NbS00036687g0003.1 protein ; (*GB) gi|359473479|ref|XP_002267299.2| (e_value=2e-30) PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g13630-like [Vitis vinifera];; (*SWP) sp|Q9LMY5|PPR41_ARATH (e_value=3e-29) Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3;; (*TAIR) AT1G13630.2 (e_value=9e-30) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:4670178-4672826 REVERSE LENGTH=798;; (*ITAG) Solyc05g010780.1.1 (e_value=3e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4977121-4979067 transcript_region:SL2.40ch05:4977121..4979067- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1Q4_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00018173g0008.1 protein NbS00023606g0004.1 protein NbS00023606g0005.1 protein NbS00020760g0003.1 protein NbS00024528g0003.1 protein ; (*GB) gi|332801231|gb|AEE99257.1| (e_value=9e-38) anthocyanin 1a [Nicotiana tabacum];; (*SWP) sp|Q9FT81|TT8_ARATH (e_value=5e-27) Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2;; (*TAIR) AT4G09820.1 (e_value=4e-28) | Symbols: TT8, BHLH42 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:6182067-6186261 FORWARD LENGTH=518;; (*ITAG) Solyc09g065100.1.1 (e_value=6e-38) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch09 gene_region:58546874-58554328 transcript_region:SL2.40ch09:58546874..58554328+ go_terms:GO:0005515,GO:0003700 functional_description:"Transcription factor (AHRD V1 *--* Q9M4A8_MAIZE); contains Interpro domain(s) IPR001092 Basic helix-loop-helix dimerisation region bHLH "; GO:0005515,GO:0003700 NbS00024528g0005.1 protein NbS00011489g0004.1 protein ; (*GB) gi|255570558|ref|XP_002526236.1| (e_value=2e-28) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G38670.1 (e_value=1e-26) | Symbols: PECT1 | phosphorylethanolamine cytidylyltransferase 1 | chr2:16168979-16171680 FORWARD LENGTH=421;; (*ITAG) Solyc05g046300.2.1 (e_value=8e-31) genomic_reference:SL2.40ch05 gene_region:57663150-57670677 transcript_region:SL2.40ch05:57663150..57670677+ go_terms:GO:0004306 functional_description:"Ethanolamine-phosphate cytidylyltransferase (AHRD V1 **** C5DB57_VITVI); contains Interpro domain(s) IPR004820 Cytidylyltransferase "; GO:0004306 NbS00002751g0003.1 protein NbS00002751g0005.1 protein NbS00002751g0006.1 protein NbS00002751g0007.1 protein NbC25013732g0001.1 protein ; (*GB) gi|359479018|ref|XP_002284615.2| (e_value=5e-19) PREDICTED: 125 kDa kinesin-related protein [Vitis vinifera];; (*TAIR) AT3G45850.2 (e_value=1e-19) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:16855814-16860950 REVERSE LENGTH=1058;; (*ITAG) Solyc09g007030.2.1 (e_value=4e-48) genomic_reference:SL2.40ch09 gene_region:694635-701527 transcript_region:SL2.40ch09:694635..701527+ go_terms:GO:0007018 functional_description:"Kinesin (AHRD V1 *-*- D8PT11_SCHCO); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0007018 NbS00011267g0005.1 protein NbS00050953g0001.1 protein ; (*GB) gi|359483518|ref|XP_002272702.2| (e_value=9e-20) PREDICTED: apoptosis inhibitor 5-like [Vitis vinifera];; (*TAIR) AT2G34040.2 (e_value=2e-15) | Symbols: | Apoptosis inhibitory protein 5 (API5) | chr2:14378571-14382246 REVERSE LENGTH=442;; (*ITAG) Solyc10g007150.2.1 (e_value=4e-20) genomic_reference:SL2.40ch10 gene_region:1553509-1565649 transcript_region:SL2.40ch10:1553509..1565649+ go_terms:GO:0017134 functional_description:"Apoptosis inhibitor (AHRD V1 ***- B0WCI8_CULQU); contains Interpro domain(s) IPR008383 Apoptosis inhibitory 5 "; GO:0017134 NbS00015031g0007.1 protein NbS00002806g0002.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=1e-14) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00039214g0003.1 protein ; (*GB) gi|255577895|ref|XP_002529820.1| (e_value=4e-18) ankyrin-kinase, putative [Ricinus communis];; (*TAIR) AT2G43850.1 (e_value=9e-20) | Symbols: | Integrin-linked protein kinase family | chr2:18159517-18161984 REVERSE LENGTH=479;; (*ITAG) Solyc12g019410.1.1 (e_value=5e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:10200165-10206483 transcript_region:SL2.40ch12:10200165..10206483- go_terms:GO:0031013,GO:0008022 functional_description:"Kinase family protein (AHRD V1 ***- D7KBF8_ARALY); contains Interpro domain(s) IPR016253 Integrin-linked protein kinase "; GO:0031013,GO:0008022 NbS00060103g0002.1 protein ; (*GB) gi|350537935|ref|NP_001234830.1| (e_value=1e-36) phenylacetaldehyde reductase [Solanum lycopersicum];; (*TAIR) AT1G51410.1 (e_value=1e-28) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:19059885-19061424 FORWARD LENGTH=325;; (*ITAG) Solyc01g008550.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:2646612-2650332 transcript_region:SL2.40ch01:2646612..2650332- go_terms:GO:0044237,GO:0008152 functional_description:"Cinnamoyl CoA reductase-like protein (AHRD V1 ***- B9HNY0_POPTR); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00010205g0002.1 protein NbS00005739g0001.1 protein NbS00012710g0003.1 protein NbS00000943g0011.1 protein NbS00000943g0013.1 protein NbS00000943g0008.1 protein NbS00000943g0010.1 protein ; (*TAIR) AT2G32450.1 (e_value=1e-14) | Symbols: | Calcium-binding tetratricopeptide family protein | chr2:13778614-13781022 FORWARD LENGTH=802;; (*ITAG) Solyc04g081050.1.1 (e_value=5e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00013494g0010.1 protein NbS00020194g0007.1 protein NbS00020194g0008.1 protein NbS00020194g0009.1 protein NbS00048684g0004.1 protein NbS00048684g0007.1 protein ; (*ITAG) Solyc02g093160.2.1 (e_value=8e-22) genomic_reference:SL2.40ch02 gene_region:48680222-48685593 transcript_region:SL2.40ch02:48680222..48685593+ functional_description:"Filament-like plant protein (Fragment) (AHRD V1 *-*- FPP_SOLLC); contains Interpro domain(s) IPR008587 Protein of unknown function DUF869, plant "; NbS00048684g0010.1 protein NbS00007212g0003.1 protein NbS00054659g0001.1 protein ; (*GB) gi|48057665|gb|AAT39964.1| (e_value=1e-20) Putative gag polyprotein, identical [Solanum demissum]; NbS00051838g0004.1 protein NbS00029492g0002.1 protein NbS00029492g0003.1 protein NbS00041663g0003.1 protein NbS00041663g0004.1 protein NbS00001666g0003.1 protein NbS00015835g0006.1 protein NbS00015835g0008.1 protein NbS00017636g0007.1 protein NbS00038112g0001.1 protein ; (*GB) gi|357467249|ref|XP_003603909.1| (e_value=7e-37) Coatomer subunit gamma [Medicago truncatula];; (*SWP) sp|Q0WW26|COPG_ARATH (e_value=2e-35) Coatomer subunit gamma OS=Arabidopsis thaliana GN=At4g34450 PE=1 SV=2;; (*TAIR) AT4G34450.1 (e_value=1e-36) | Symbols: | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471956-16476795 FORWARD LENGTH=886;; (*ITAG) Solyc01g109540.2.1 (e_value=1e-31) genomic_reference:SL2.40ch01 gene_region:88220380-88229123 transcript_region:SL2.40ch01:88220380..88229123+ go_terms:GO:0005515 functional_description:"Coatomer subunit gamma (AHRD V1 ***- B6SV32_MAIZE); contains Interpro domain(s) IPR017106 Coatomer, gamma subunit "; GO:0005515 NbC26078426g0003.1 protein ; (*GB) gi|255556962|ref|XP_002519514.1| (e_value=6e-37) translin, putative [Ricinus communis];; (*TAIR) AT2G37020.2 (e_value=1e-35) | Symbols: | Translin family protein | chr2:15546511-15548792 FORWARD LENGTH=310;; (*ITAG) Solyc10g086210.1.1 (e_value=3e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64439630-64444454 transcript_region:SL2.40ch10:64439630..64444454- go_terms:GO:0003729 functional_description:"Translin-like protein (AHRD V1 ***- Q9SJK5_ARATH); contains Interpro domain(s) IPR002848 Translin "; GO:0003729 NbS00011289g0007.1 protein NbS00011289g0009.1 protein NbS00011289g0010.1 protein NbS00015059g0007.1 protein ; (*GB) gi|356513910|ref|XP_003525651.1| (e_value=7e-33) PREDICTED: dnaJ homolog subfamily C member 13-like [Glycine max];; (*TAIR) AT2G26890.1 (e_value=8e-33) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021890.2.1 (e_value=2e-44) genomic_reference:SL2.40ch08 gene_region:10181970-10188023 transcript_region:SL2.40ch08:10181970..10188023+ go_terms:GO:0055114 functional_description:"DnaJ homolog subfamily C member 13 (AHRD V1 **-- DJC13_HUMAN)"; GO:0055114 NbS00001377g0005.1 protein NbS00025545g0014.1 protein NbS00025545g0006.1 protein NbS00025545g0007.1 protein NbS00019300g0007.1 protein NbS00009880g0002.1 protein NbS00009880g0104.1 protein NbS00009880g0106.1 protein NbS00002650g0003.1 protein NbS00055985g0012.1 protein NbS00055985g0013.1 protein NbS00055985g0008.1 protein NbS00055985g0009.1 protein NbS00055985g0010.1 protein ; (*ITAG) Solyc01g010100.1.1 (e_value=3e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:4837391-4838867 transcript_region:SL2.40ch01:4837391..4838867+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 ***- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00023618g0010.1 protein ; (*GB) gi|118488139|gb|ABK95889.1| (e_value=1e-60) unknown [Populus trichocarpa];; (*TAIR) AT1G31910.1 (e_value=2e-53) | Symbols: | GHMP kinase family protein | chr1:11459050-11461649 FORWARD LENGTH=505;; (*ITAG) Solyc08g076140.2.1 (e_value=8e-75) genomic_reference:SL2.40ch08 gene_region:57333765-57341381 transcript_region:SL2.40ch08:57333765..57341381+ go_terms:GO:0016310 functional_description:"Phosphomevalonate kinase (AHRD V1 ***- Q944G1_HEVBR); contains Interpro domain(s) IPR016005 Phosphomevalonate kinase, ERG8 "; GO:0016310 NbS00046135g0004.1 protein NbS00016170g0004.1 protein NbS00016170g0005.1 protein NbS00024071g0007.1 protein NbS00024071g0009.1 protein NbS00039172g0001.1 protein ; (*GB) gi|224142425|ref|XP_002324558.1| (e_value=2e-22) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g005110.2.1 (e_value=1e-30) genomic_reference:SL2.40ch07 gene_region:128660-133395 transcript_region:SL2.40ch07:128660..133395+ go_terms:GO:0006032,GO:0005975,GO:0006468 functional_description:"S-receptor kinase-like protein 1 (AHRD V1 *-*- Q5NJB1_SENSQ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006032,GO:0005975,GO:0006468 NbS00006170g0004.1 protein NbC23739273g0001.1 protein ; (*GB) gi|288901116|gb|ADC68260.1| (e_value=1e-45) neutral/alkaline invertase 2 [Hevea brasiliensis];; (*TAIR) AT4G09510.2 (e_value=4e-48) | Symbols: CINV2 | cytosolic invertase 2 | chr4:6021679-6023310 REVERSE LENGTH=461;; (*ITAG) Solyc11g020610.1.1 (e_value=4e-50) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:11747788-11752875 transcript_region:SL2.40ch11:11747788..11752875+ go_terms:GO:0005515,GO:0004564 functional_description:"Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH); contains Interpro domain(s) IPR006937 Plant neutral invertase "; GO:0005515,GO:0004564 NbS00041324g0003.1 protein NbS00006931g0003.1 protein NbS00006931g0005.1 protein NbS00006931g0112.1 protein NbS00006931g0105.1 protein NbS00000031g0008.1 protein NbS00016030g0002.1 protein NbS00042889g0004.1 protein NbS00042889g0005.1 protein NbS00018141g0011.1 protein ; (*GB) gi|359492305|ref|XP_002265283.2| (e_value=2e-29) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=2e-25) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=1e-26) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=7e-30) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00018141g0013.1 protein ; (*GB) gi|359492305|ref|XP_002265283.2| (e_value=8e-20) PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform 1 [Vitis vinifera];; (*SWP) sp|Q9STN3|SPT51_ARATH (e_value=1e-20) Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2;; (*TAIR) AT4G08350.1 (e_value=7e-22) | Symbols: GTA02, GTA2 | global transcription factor group A2 | chr4:5286351-5292072 FORWARD LENGTH=1041;; (*ITAG) Solyc04g064700.2.1 (e_value=5e-30) genomic_reference:SL2.40ch04 gene_region:54958305-54972460 transcript_region:SL2.40ch04:54958305..54972460+ go_terms:GO:0016944 functional_description:"Transcription elongation factor spt5 (AHRD V1 *-** B6JZQ2_SCHJY); contains Interpro domain(s) IPR017071 Transcription elongation factor Spt5 "; GO:0016944 NbS00018141g0008.1 protein NbS00018141g0009.1 protein NbS00038703g0003.1 protein NbS00027988g0001.1 protein NbS00039853g0001.1 protein ; (*GB) gi|28192371|gb|AAK07729.1| (e_value=6e-32) NTCP23-like cysteine proteinase [Nicotiana tabacum];; (*SWP) sp|Q40143|CYSP3_SOLLC (e_value=6e-31) Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1;; (*TAIR) AT3G45310.2 (e_value=9e-31) | Symbols: | Cysteine proteinases superfamily protein | chr3:16628704-16630473 REVERSE LENGTH=357;; (*ITAG) Solyc07g041900.2.1 (e_value=4e-32) genomic_reference:SL2.40ch07 gene_region:51828739-51831068 transcript_region:SL2.40ch07:51828739..51831068- go_terms:GO:0030984,GO:0004197 functional_description:"Cathepsin L-like cysteine proteinase (AHRD V1 **** A7LJ78_DERVA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain IPR000169 Peptidase, cysteine peptidase active site "; GO:0030984,GO:0004197 NbS00010074g0006.1 protein NbC24327056g0002.1 protein ; (*GB) gi|365222926|gb|AEW69815.1| (e_value=4e-33) Hop-interacting protein THI116 [Solanum lycopersicum];; (*SWP) sp|D2XNQ8|FLOT1_MEDTR (e_value=4e-22) Flotillin-like protein 1 OS=Medicago truncatula GN=FLOT1 PE=2 SV=1;; (*TAIR) AT5G25260.1 (e_value=5e-23) | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated protein family | chr5:8752751-8754282 FORWARD LENGTH=463;; (*ITAG) Solyc03g117250.2.1 (e_value=1e-35) genomic_reference:SL2.40ch03 gene_region:60489302-60492373 transcript_region:SL2.40ch03:60489302..60492373- functional_description:"Flotillin 1 (AHRD V1 *-*- B3V5K3_9EURY); contains Interpro domain(s) IPR001107 Band 7 protein "; NbS00028827g0004.1 protein NbS00028827g0008.1 protein NbS00043466g0004.1 protein NbS00050202g0002.1 protein NbS00018850g0004.1 protein NbS00007305g0003.1 protein NbS00007525g0102.1 protein NbS00007525g0104.1 protein NbS00010384g0004.1 protein NbS00010384g0005.1 protein NbS00010384g0206.1 protein NbS00010384g0207.1 protein NbS00053855g0008.1 protein NbS00011926g0004.1 protein NbS00011926g0104.1 protein NbS00011926g0105.1 protein NbS00029095g0005.1 protein NbS00029095g0009.1 protein NbC23788121g0001.1 protein ; (*ITAG) Solyc11g072730.1.1 (e_value=4e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00004599g0003.1 protein ; (*GB) gi|147833266|emb|CAN77478.1| (e_value=5e-16) hypothetical protein VITISV_013730 [Vitis vinifera]; NbS00006629g0004.1 protein NbS00005089g0110.1 protein NbS00009249g0011.1 protein NbS00003615g0008.1 protein NbS00012634g0005.1 protein NbS00023548g0002.1 protein ; (*GB) gi|217072954|gb|ACJ84837.1| (e_value=5e-26) unknown [Medicago truncatula];; (*SWP) sp|P41374|IF2A_DROME (e_value=4e-19) Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=2 SV=1;; (*TAIR) AT2G40290.3 (e_value=3e-27) | Symbols: | Eukaryotic translation initiation factor 2 subunit 1 | chr2:16829872-16830889 REVERSE LENGTH=241;; (*ITAG) Solyc03g095840.2.1 (e_value=1e-28) genomic_reference:SL2.40ch03 gene_region:50975441-50981714 transcript_region:SL2.40ch03:50975441..50981714+ go_terms:GO:0005515,GO:0003743 functional_description:"Eukaryotic translation initiation factor 2 alpha subunit family protein expressed (AHRD V1 **** Q10MT2_ORYSJ); contains Interpro domain(s) IPR011488 Eukaryotic translation initiation factor 2, alpha subunit "; GO:0005515,GO:0003743 NbS00014421g0004.1 protein NbS00008099g0215.1 protein NbS00008099g0210.1 protein NbS00008823g0004.1 protein NbS00008823g0005.1 protein NbS00038515g0004.1 protein NbS00014664g0008.1 protein NbS00027179g0007.1 protein NbS00002605g0001.1 protein NbS00002605g0003.1 protein ; (*ITAG) Solyc05g053730.2.1 (e_value=3e-13) genomic_reference:SL2.40ch05 gene_region:62909468-62913284 transcript_region:SL2.40ch05:62909468..62913284+ functional_description:"Genomic DNA chromosome 5 TAC clone K21P3 (AHRD V1 *-*- Q9FJ19_ARATH)"; NbS00010206g0002.1 protein NbS00008035g0001.1 protein NbS00023964g0003.1 protein NbS00054150g0001.1 protein ; (*GB) gi|350534958|ref|NP_001234424.1| (e_value=2e-43) uncharacterized protein LOC543899 [Solanum lycopersicum];; (*TAIR) AT4G00350.1 (e_value=2e-36) | Symbols: | MATE efflux family protein | chr4:151978-153988 FORWARD LENGTH=542;; (*ITAG) Solyc03g025190.2.1 (e_value=5e-46) genomic_reference:SL2.40ch03 gene_region:7043560-7046813 transcript_region:SL2.40ch03:7043560..7046813+ go_terms:GO:0015299,GO:0015559 functional_description:"Multidrug resistance protein mdtK (AHRD V1 **-- MDTK_YERP3); contains Interpro domain(s) IPR002528 Multi antimicrobial extrusion protein MatE "; GO:0015299,GO:0015559 NbS00005128g0007.1 protein NbS00021914g0006.1 protein NbS00003247g0009.1 protein NbS00005404g0007.1 protein NbS00013266g0004.1 protein NbS00012895g0011.1 protein ; (*GB) gi|297744116|emb|CBI37086.3| (e_value=2e-18) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc06g083920.2.1 (e_value=4e-25) genomic_reference:SL2.40ch06 gene_region:45505640-45511030 transcript_region:SL2.40ch06:45505640..45511030+ go_terms:GO:0006629 functional_description:"Lipase family protein (AHRD V1 *-*- Q2R051_ORYSJ); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00012895g0007.1 protein NbC25785692g0002.1 protein ; (*GB) gi|297744222|emb|CBI37192.3| (e_value=9e-131) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G04090.1 (e_value=2e-119) | Symbols: | Plant protein of unknown function (DUF946) | chr1:1057225-1059247 FORWARD LENGTH=572;; (*ITAG) Solyc09g064540.2.1 (e_value=1e-153) genomic_reference:SL2.40ch09 gene_region:57414742-57418748 transcript_region:SL2.40ch09:57414742..57418748- functional_description:"Genomic DNA chromosome 5 P1 clone MRH10 (AHRD V1 **-- Q9FND1_ARATH); contains Interpro domain(s) IPR009291 Protein of unknown function DUF946, plant "; NbS00012259g0004.1 protein NbS00012259g0007.1 protein NbS00029758g0004.1 protein NbS00006928g0003.1 protein ; (*GB) gi|147815496|emb|CAN65992.1| (e_value=9e-20) hypothetical protein VITISV_042149 [Vitis vinifera]; NbS00029514g0001.1 protein ; (*ITAG) Solyc05g052210.2.1 (e_value=7e-15) genomic_reference:SL2.40ch05 gene_region:61637100-61640159 transcript_region:SL2.40ch05:61637100..61640159- functional_description:"Unknown Protein (AHRD V1)"; NbS00056992g0002.1 protein NbS00028071g0008.1 protein NbS00007826g0005.1 protein NbS00007826g0007.1 protein NbS00007826g0010.1 protein NbS00023892g0002.1 protein NbS00033357g0003.1 protein NbS00033357g0004.1 protein NbC24505564g0001.1 protein ; (*GB) gi|207083721|gb|ACI23252.1| (e_value=7e-64) ANANTHA [Solanum lycopersicum];; (*SWP) sp|Q39090|UFO_ARATH (e_value=6e-46) Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2;; (*TAIR) AT1G30950.1 (e_value=5e-47) | Symbols: UFO | F-box family protein | chr1:11036180-11037508 FORWARD LENGTH=442;; (*ITAG) Solyc02g081670.1.1 (e_value=1e-66) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:40120235-40121602 transcript_region:SL2.40ch02:40120235..40121602+ go_terms:GO:0008134,GO:0004842 functional_description:"Fimbriata (Fragment) (AHRD V1 **-- Q6QVW9_MIMLE); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; GO:0008134,GO:0004842 NbS00014924g0002.1 protein NbS00026709g0005.1 protein NbS00043445g0003.1 protein NbS00043445g0004.1 protein NbS00011537g0004.1 protein NbS00033808g0006.1 protein NbS00000371g0005.1 protein NbS00052566g0003.1 protein NbS00035259g0007.1 protein NbS00022617g0003.1 protein NbS00022617g0004.1 protein NbS00000082g0005.1 protein NbS00037026g0003.1 protein NbS00032139g0006.1 protein NbS00011218g0006.1 protein NbS00011218g0010.1 protein NbS00001573g0014.1 protein NbS00001573g0015.1 protein NbS00001573g0016.1 protein ; (*GB) gi|157690017|gb|ABV65693.1| (e_value=3e-16) photosystem II CP47 chlorophyll apoprotein, partial (chloroplast) [Viviania marifolia];; (*SWP) sp|A6MM62|PSBB_BUXMI (e_value=5e-17) Photosystem II CP47 chlorophyll apoprotein OS=Buxus microphylla GN=psbB PE=3 SV=1;; (*ITAG) ATCG00680.1 (e_value=1e-17) | Symbols: PSBB | photosystem II reaction center protein B | chrC:72371-73897 FORWARD LENGTH=508;; (*ITAG) Solyc01g007500.2.1 (e_value=7e-17) genomic_reference:SL2.40ch01 gene_region:1869602-1871620 transcript_region:SL2.40ch01:1869602..1871620+ go_terms:GO:0009523,GO:0016020 functional_description:"Photosystem II CP47 chlorophyll apoprotein (AHRD V1 ***- D3WBA3_9BORA); contains Interpro domain(s) IPR017486 Photosystem II, PsbB "; GO:0009523,GO:0016020 NbS00005819g0004.1 protein NbS00005819g0009.1 protein ; (*GB) gi|147805812|emb|CAN60544.1| (e_value=4e-23) hypothetical protein VITISV_006250 [Vitis vinifera];; (*TAIR) AT2G01050.1 (e_value=1e-17) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbC24367018g0001.1 protein ; (*ITAG) Solyc12g044700.1.1 (e_value=7e-23) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch12 gene_region:45400172-45401544 transcript_region:SL2.40ch12:45400172..45401544+ functional_description:"F-box family protein (AHRD V1 ***- B9I3S8_POPTR)"; NbS00029054g0006.1 protein NbS00019722g0001.1 protein NbS00002922g0004.1 protein NbS00002832g0002.1 protein NbS00013178g0002.1 protein NbS00021352g0002.1 protein ; (*ITAG) Solyc07g052100.2.1 (e_value=4e-29) genomic_reference:SL2.40ch07 gene_region:57966277-57974077 transcript_region:SL2.40ch07:57966277..57974077+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00033974g0002.1 protein NbS00000114g0003.1 protein ; (*ITAG) Solyc11g056500.1.1 (e_value=4e-26) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:43173486-43174103 transcript_region:SL2.40ch11:43173486..43174103- functional_description:"Photosystem Q(B) protein (AHRD V1 *-*- B6VJV1_VITVI)"; NbS00000114g0006.1 protein ; (*GB) gi|225435153|ref|XP_002284657.1| (e_value=1e-24) PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis vinifera];; (*SWP) sp|O14802|RPC1_HUMAN (e_value=2e-16) DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2;; (*TAIR) AT5G60040.2 (e_value=1e-13) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1391;; (*ITAG) Solyc11g072730.1.1 (e_value=3e-47) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53009022-53038680 transcript_region:SL2.40ch11:53009022..53038680- go_terms:GO:0005515,GO:0003899 functional_description:"DNA-directed RNA polymerase (AHRD V1 **** B9GIK9_POPTR); contains Interpro domain(s) IPR015700 DNA-directed RNA polymerase III largest subunit "; GO:0005515,GO:0003899 NbS00017724g0002.1 protein NbS00010756g0004.1 protein NbS00062188g0001.1 protein NbS00039092g0006.1 protein NbS00019118g0006.1 protein NbS00019118g0007.1 protein NbS00024460g0011.1 protein ; (*GB) gi|224104167|ref|XP_002313344.1| (e_value=9e-31) predicted protein [Populus trichocarpa];; (*ITAG) Solyc11g065630.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48235984-48241367 transcript_region:SL2.40ch11:48235984..48241367+ functional_description:"Unknown Protein (AHRD V1)"; NbS00024460g0012.1 protein NbS00024460g0009.1 protein NbS00046741g0004.1 protein NbS00009561g0006.1 protein ; (*GB) gi|255574131|ref|XP_002527981.1| (e_value=2e-23) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G24420.2 (e_value=1e-20) | Symbols: | DNA repair ATPase-related | chr2:10380147-10382624 FORWARD LENGTH=440;; (*ITAG) Solyc07g008970.2.1 (e_value=2e-40) genomic_reference:SL2.40ch07 gene_region:3992722-3999921 transcript_region:SL2.40ch07:3992722..3999921- functional_description:"Unknown Protein (AHRD V1)"; NbS00010577g0002.1 protein NbS00019946g0105.1 protein NbS00019946g0108.1 protein NbS00033108g0002.1 protein ; (*TAIR) AT2G20650.2 (e_value=5e-14) | Symbols: | RING/U-box superfamily protein | chr2:8903954-8907017 REVERSE LENGTH=559;; (*ITAG) Solyc12g005470.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:277571-285208 transcript_region:SL2.40ch12:277571..285208+ go_terms:GO:0008270 functional_description:"Zinc finger (C3HC4 RING finger) protein (AHRD V1 *-*- B9PQV1_TOXGO); contains Interpro domain(s) IPR011016 Zinc finger, RING-CH-type "; GO:0008270 NbC24328708g0001.1 protein ; (*GB) gi|16904222|gb|AAL30818.1|AF435450_1 (e_value=1e-38) calcium/calmodulin-dependent protein kinase CaMK1 [Nicotiana tabacum];; (*ITAG) Solyc03g082500.2.1 (e_value=3e-29) genomic_reference:SL2.40ch03 gene_region:45970606-45979188 transcript_region:SL2.40ch03:45970606..45979188+ go_terms:GO:0004683 functional_description:"Calcium dependent protein kinase-like protein (AHRD V1 **** Q9FIM9_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004683 NbS00022693g0006.1 protein NbS00017304g0002.1 protein NbS00017304g0003.1 protein NbS00017304g0006.1 protein NbS00042969g0005.1 protein NbS00047446g0001.1 protein NbS00012176g0001.1 protein NbS00005711g0006.1 protein ; (*GB) gi|255570159|ref|XP_002526040.1| (e_value=5e-54) hydrolase, acting on ester bonds, putative [Ricinus communis];; (*TAIR) AT2G26870.1 (e_value=1e-43) | Symbols: NPC2 | non-specific phospholipase C2 | chr2:11457117-11459355 REVERSE LENGTH=514;; (*ITAG) Solyc01g008790.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:2826378-2831040 transcript_region:SL2.40ch01:2826378..2831040+ go_terms:GO:0016788 functional_description:"Phosphoesterase family protein (AHRD V1 ***- D7LEV5_ARALY); contains Interpro domain(s) IPR007312 Phosphoesterase "; GO:0016788 NbS00029637g0001.1 protein ; (*ITAG) Solyc12g094410.1.1 (e_value=3e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62972424-62976753 transcript_region:SL2.40ch12:62972424..62976753+ go_terms:GO:0008152,GO:0006468 functional_description:"Kinase family protein (AHRD V1 ***- D7MEZ1_ARALY); contains Interpro domain(s) IPR015783 ATMRK serine/threonine protein kinase-like "; GO:0008152,GO:0006468 NbS00029637g0002.1 protein NbS00034692g0006.1 protein NbS00013688g0006.1 protein NbS00005017g0003.1 protein NbS00060695g0002.1 protein NbS00022208g0004.1 protein NbS00033024g0005.1 protein NbS00044127g0003.1 protein NbS00008065g0004.1 protein NbS00021979g0013.1 protein ; (*GB) gi|350535897|ref|NP_001233963.1| (e_value=2e-62) protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Solanum lycopersicum];; (*SWP) sp|P93227|FNTA_SOLLC (e_value=6e-64) Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum GN=FTA PE=2 SV=1;; (*TAIR) AT3G59380.1 (e_value=1e-35) | Symbols: FTA, PLP, ATFTA, PFT/PGGT-IALPHA | farnesyltransferase A | chr3:21944209-21945781 FORWARD LENGTH=326;; (*ITAG) Solyc06g073390.2.1 (e_value=4e-65) genomic_reference:SL2.40ch06 gene_region:41616510-41621899 transcript_region:SL2.40ch06:41616510..41621899+ go_terms:GO:0004660 functional_description:"Farnesyltransferase/type I geranylgeranyltransferase alpha subunit (AHRD V1 **** Q6EZ49_CATRO); contains Interpro domain(s) IPR008940 Protein prenyltransferase "; GO:0004660 NbS00021979g0005.1 protein NbS00005713g0004.1 protein NbS00005713g0006.1 protein NbS00003680g0008.1 protein ; (*ITAG) Solyc11g072970.1.1 (e_value=6e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:53198034-53204116 transcript_region:SL2.40ch11:53198034..53204116- go_terms:GO:0016787 functional_description:"Nucleoside diphosphate-linked moiety X motif 22 (AHRD V1 ***- NUD22_RAT); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00003106g0105.1 protein NbS00004184g0006.1 protein ; (*GB) gi|20149044|gb|AAM12777.1| (e_value=3e-27) putative auxin-induced SAUR-like protein [Capsicum annuum];; (*SWP) sp|P32295|ARG7_VIGRR (e_value=1e-24) Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1;; (*TAIR) AT2G21210.1 (e_value=5e-26) | Symbols: | SAUR-like auxin-responsive protein family | chr2:9085513-9085809 REVERSE LENGTH=98;; (*ITAG) Solyc01g110780.1.1 (e_value=2e-33) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:89106505-89106765 transcript_region:SL2.40ch01:89106505..89106765- functional_description:"Auxin-induced SAUR-like protein (AHRD V1 ***- Q8S351_CAPAN); contains Interpro domain(s) IPR003676 Auxin responsive SAUR protein "; NbS00041634g0005.1 protein ; (*GB) gi|224107681|ref|XP_002314561.1| (e_value=2e-39) predicted protein [Populus trichocarpa];; (*SWP) sp|Q70PR7|VINSY_RAUSE (e_value=3e-24) Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2;; (*TAIR) AT3G26040.1 (e_value=3e-26) | Symbols: | HXXXD-type acyl-transferase family protein | chr3:9519741-9521069 FORWARD LENGTH=442;; (*ITAG) Solyc04g082350.1.1 (e_value=3e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63645577-63646977 transcript_region:SL2.40ch04:63645577..63646977- go_terms:GO:0016740 functional_description:"Transferase family protein (AHRD V1 **-* D7LQY1_ARALY); contains Interpro domain(s) IPR003480 Transferase "; GO:0016740 NbS00041634g0007.1 protein ; (*GB) gi|255587744|ref|XP_002534381.1| (e_value=8e-21) Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis];; (*SWP) sp|Q9C7S7|ERO1_ARATH (e_value=8e-19) Endoplasmic oxidoreductin-1 OS=Arabidopsis thaliana GN=AERO1 PE=1 SV=1;; (*TAIR) AT1G72280.1 (e_value=6e-20) | Symbols: AERO1, ERO1 | endoplasmic reticulum oxidoreductins 1 | chr1:27212039-27214506 REVERSE LENGTH=469;; (*ITAG) Solyc07g056390.2.1 (e_value=2e-28) genomic_reference:SL2.40ch07 gene_region:61572433-61577873 transcript_region:SL2.40ch07:61572433..61577873- go_terms:GO:0015035 functional_description:"Endoplasmic oxidoreductin-1 (AHRD V1 **-- B6T402_MAIZE); contains Interpro domain(s) IPR007266 Endoplasmic reticulum oxidoreductin 1 "; GO:0015035 NbS00011533g0118.1 protein NbS00019808g0003.1 protein NbS00004350g0003.1 protein NbS00009169g0003.1 protein NbS00023513g0008.1 protein ; (*GB) gi|296089677|emb|CBI39496.3| (e_value=2e-54) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9MA55|ACBP4_ARATH (e_value=2e-45) Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1;; (*TAIR) AT3G05420.1 (e_value=1e-46) | Symbols: ACBP4 | acyl-CoA binding protein 4 | chr3:1561880-1567047 FORWARD LENGTH=668;; (*ITAG) Solyc01g099350.2.1 (e_value=1e-56) genomic_reference:SL2.40ch01 gene_region:81389905-81403291 transcript_region:SL2.40ch01:81389905..81403291+ go_terms:GO:0000062 functional_description:"Acyl-CoA binding protein 4 acyl-CoA-binding domain 4 (AHRD V1 **-* D7L3U2_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0000062 NbS00055258g0005.1 protein NbC23939653g0001.1 protein ; (*ITAG) Solyc12g088450.1.1 (e_value=7e-22) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62259095-62263686 transcript_region:SL2.40ch12:62259095..62263686+ functional_description:"Genomic DNA chromosome 5 P1 clone MKD15 (AHRD V1 ***- Q9FMY0_ARATH)"; NbS00009316g0006.1 protein NbS00019775g0002.1 protein NbS00045793g0005.1 protein ; (*GB) gi|224120370|ref|XP_002331031.1| (e_value=6e-28) predicted protein [Populus trichocarpa];; (*SWP) sp|Q0WPH8|NEK5_ARATH (e_value=8e-22) Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana GN=NEK5 PE=1 SV=1;; (*TAIR) AT3G44200.1 (e_value=6e-23) | Symbols: ATNEK6, NEK6, IBO1 | NIMA (never in mitosis, gene A)-related 6 | chr3:15906788-15911365 FORWARD LENGTH=956;; (*ITAG) Solyc11g061960.1.1 (e_value=9e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:45753595-45760507 transcript_region:SL2.40ch11:45753595..45760507+ go_terms:GO:0019903 functional_description:"Serine/threonine kinase (AHRD V1 *-*- C4QNN2_SCHMA); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0019903 NbS00029911g0004.1 protein NbS00029911g0006.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=2e-18) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00029911g0007.1 protein NbS00023988g0004.1 protein NbS00049814g0004.1 protein NbS00052109g0002.1 protein NbC25807550g0002.1 protein ; (*GB) gi|357463459|ref|XP_003602011.1| (e_value=5e-19) Apoptotic chromatin condensation inducer in the nucleus [Medicago truncatula];; (*ITAG) Solyc04g072670.2.1 (e_value=2e-13) genomic_reference:SL2.40ch04 gene_region:57222954-57227125 transcript_region:SL2.40ch04:57222954..57227125- go_terms:GO:0003676 functional_description:"Apoptotic chromatin condensation inducer 1 (Fragment) (AHRD V1 *--- B8JJ88_MOUSE); contains Interpro domain(s) IPR003034 DNA-binding SAP "; GO:0003676 NbS00019841g0005.1 protein NbS00009832g0003.1 protein NbS00028697g0004.1 protein NbS00013072g0003.1 protein NbS00049769g0003.1 protein ; (*GB) gi|332322089|emb|CCA65980.1| (e_value=5e-18) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g006090.1.1 (e_value=2e-17) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00011017g0011.1 protein NbS00011017g0009.1 protein ; (*ITAG) Solyc10g055230.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:51979877-51980431 transcript_region:SL2.40ch10:51979877..51980431- functional_description:"Disease resistance response protein (AHRD V1 ***- A8IXC7_BRACM); contains Interpro domain(s) IPR004265 Plant disease resistance response protein "; NbS00011017g0010.1 protein ; (*GB) gi|47825035|gb|AAT38805.1| (e_value=7e-12) hypothetical protein SDM1_47t00008 [Solanum demissum];; (*ITAG) Solyc09g059390.2.1 (e_value=4e-18) genomic_reference:SL2.40ch09 gene_region:49979932-49982408 transcript_region:SL2.40ch09:49979932..49982408- functional_description:"Unknown Protein (AHRD V1)"; NbS00011017g0102.1 protein NbS00011017g0205.1 protein NbS00011017g0207.1 protein NbS00011017g0208.1 protein NbS00000947g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-12) RNase H family protein [Solanum demissum]; NbS00005964g0005.1 protein ; (*GB) gi|225555483|gb|EEH03775.1| (e_value=3e-14) RNase H domain-containing protein [Ajellomyces capsulatus G186AR]; NbS00003641g0004.1 protein NbS00014116g0005.1 protein ; (*GB) gi|255572638|ref|XP_002527252.1| (e_value=1e-16) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc06g083080.2.1 (e_value=1e-21) genomic_reference:SL2.40ch06 gene_region:44921931-44923901 transcript_region:SL2.40ch06:44921931..44923901+ functional_description:"Unknown Protein (AHRD V1)"; NbS00014943g0003.1 protein NbS00038098g0002.1 protein NbS00003138g0004.1 protein NbS00048148g0003.1 protein NbS00016247g0004.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=2e-13) RNase H family protein [Solanum demissum]; NbS00016247g0005.1 protein NbS00017882g0004.1 protein NbS00025883g0003.1 protein NbS00040825g0002.1 protein NbS00000902g0004.1 protein NbS00006088g0008.1 protein NbC23790037g0002.1 protein ; (*GB) gi|78191448|gb|ABB29945.1| (e_value=1e-23) ADP/ATP translocator-like [Solanum tuberosum];; (*SWP) sp|P27081|ADT2_SOLTU (e_value=8e-25) ADP,ATP carrier protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=ANT1 PE=2 SV=1;; (*TAIR) AT5G13490.2 (e_value=7e-22) | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4336034-4337379 FORWARD LENGTH=385;; (*ITAG) Solyc11g062130.1.1 (e_value=7e-26) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:46084210-46085851 transcript_region:SL2.40ch11:46084210..46085851+ go_terms:GO:0016020,GO:0005743 functional_description:"Mitochondrial ADP/ATP carrier proteins (AHRD V1 ***- Q2UU95_ASPOR); contains Interpro domain(s) IPR002113 Adenine nucleotide translocator 1 "; GO:0016020,GO:0005743 NbS00004926g0002.1 protein NbS00006198g0003.1 protein NbS00006198g0005.1 protein NbS00006198g0007.1 protein NbS00006198g0008.1 protein NbC23369687g0001.1 protein ; (*GB) gi|297842863|ref|XP_002889313.1| (e_value=1e-36) hypothetical protein ARALYDRAFT_477251 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q99PV0|PRP8_MOUSE (e_value=9e-33) Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2;; (*TAIR) AT1G80070.1 (e_value=3e-39) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359;; (*ITAG) Solyc07g008880.2.1 (e_value=5e-39) genomic_reference:SL2.40ch07 gene_region:3845794-3858565 transcript_region:SL2.40ch07:3845794..3858565+ go_terms:GO:0005681 functional_description:"Pre-mRNA-processing-splicing factor 8 (AHRD V1 ***- D0NFV2_PHYIN); contains Interpro domain(s) IPR012592 PROCN "; GO:0005681 NbS00033272g0006.1 protein NbS00017071g0004.1 protein NbS00017071g0007.1 protein NbS00012351g0003.1 protein NbS00039967g0006.1 protein NbS00018907g0003.1 protein NbS00001703g0206.1 protein NbS00022637g0104.1 protein NbS00028247g0002.1 protein ; (*ITAG) Solyc12g088800.1.1 (e_value=6e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62471287-62476348 transcript_region:SL2.40ch12:62471287..62476348+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00007280g0106.1 protein NbS00035725g0004.1 protein NbS00016505g0008.1 protein NbS00016505g0010.1 protein NbS00005900g0104.1 protein NbS00005900g0109.1 protein NbS00006241g0004.1 protein NbC26284378g0001.1 protein NbS00006502g0008.1 protein ; (*GB) gi|359479947|ref|XP_002270567.2| (e_value=5e-16) PREDICTED: uncharacterized protein LOC100260535 [Vitis vinifera];; (*TAIR) AT3G62390.1 (e_value=7e-15) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=2e-26) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00006502g0009.1 protein NbS00036544g0012.1 protein NbS00008987g0006.1 protein NbS00003556g0012.1 protein NbS00001876g0006.1 protein NbS00001876g0009.1 protein ; (*GB) gi|356542639|ref|XP_003539774.1| (e_value=1e-19) PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max];; (*ITAG) Solyc11g069630.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:51351654-51353722 transcript_region:SL2.40ch11:51351654..51353722- go_terms:GO:0006468,GO:0016998 functional_description:"Receptor-like protein kinase At5g59670 (AHRD V1 *-*- RLK7_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0016998 NbS00044054g0004.1 protein NbS00019995g0005.1 protein NbS00019995g0008.1 protein NbS00012795g0006.1 protein NbS00015663g0004.1 protein NbS00013470g0005.1 protein NbS00013470g0007.1 protein NbS00013470g0008.1 protein NbS00013470g0009.1 protein ; (*ITAG) Solyc01g068630.2.1 (e_value=6e-16) genomic_reference:SL2.40ch01 gene_region:70226606-70230041 transcript_region:SL2.40ch01:70226606..70230041+ go_terms:GO:0016787,GO:0008152 functional_description:"Pyrimidine 5&apos-nucleotidase (AHRD V1 ***- D3P8R6_DEFDS); contains Interpro domain(s) IPR010237 Pyrimidine 5-nucleotidase "; GO:0016787,GO:0008152 NbS00019950g0107.1 protein NbS00004819g0003.1 protein NbS00026267g0004.1 protein NbS00027973g0003.1 protein NbS00027973g0004.1 protein NbS00011683g0206.1 protein NbS00011683g0207.1 protein NbS00011683g0208.1 protein NbS00011683g0210.1 protein NbS00039155g0001.1 protein NbS00010244g0007.1 protein NbS00024376g0002.1 protein NbS00001000g0005.1 protein NbS00001000g0006.1 protein NbS00001000g0105.1 protein NbS00001000g0107.1 protein NbS00001000g0110.1 protein NbS00033571g0004.1 protein NbS00033571g0008.1 protein NbS00046714g0001.1 protein NbS00046714g0002.1 protein NbS00028770g0004.1 protein NbS00028770g0005.1 protein ; (*ITAG) Solyc03g097360.2.1 (e_value=6e-17) genomic_reference:SL2.40ch03 gene_region:53122339-53128233 transcript_region:SL2.40ch03:53122339..53128233+ functional_description:"BolA-like (AHRD V1 ***- Q67VQ4_ORYSJ); contains Interpro domain(s) IPR002634 BolA-like protein "; NbS00001297g0002.1 protein NbS00059328g0003.1 protein NbS00011529g0003.1 protein NbS00016690g0006.1 protein NbS00016690g0010.1 protein NbS00006848g0003.1 protein NbS00003411g0013.1 protein NbS00003411g0006.1 protein NbS00003411g0007.1 protein NbS00019418g0008.1 protein NbS00011833g0004.1 protein ; (*GB) gi|357494245|ref|XP_003617411.1| (e_value=1e-56) Conserved oligomeric Golgi complex subunit [Medicago truncatula];; (*SWP) sp|Q9UP83|COG5_HUMAN (e_value=9e-27) Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3;; (*TAIR) AT1G67930.1 (e_value=2e-55) | Symbols: | Golgi transport complex protein-related | chr1:25474218-25477332 REVERSE LENGTH=832;; (*ITAG) Solyc10g007720.2.1 (e_value=4e-63) genomic_reference:SL2.40ch10 gene_region:1967084-1974413 transcript_region:SL2.40ch10:1967084..1974413- go_terms:GO:0005515 functional_description:"Conserved oligomeric Golgi complex subunit 5 (AHRD V1 ***- COG5_HUMAN); contains Interpro domain(s) IPR019465 Conserved oligomeric Golgi complex, subunit 5 "; GO:0005515 NbS00036998g0004.1 protein NbS00038163g0006.1 protein NbS00038163g0008.1 protein NbS00053209g0003.1 protein ; (*GB) gi|388508836|gb|AFK42484.1| (e_value=9e-35) unknown [Lotus japonicus]; NbS00026846g0002.1 protein NbS00026846g0004.1 protein NbC25193361g0002.1 protein ; (*GB) gi|358347867|ref|XP_003637972.1| (e_value=5e-16) hypothetical protein MTR_115s0011 [Medicago truncatula];; (*ITAG) Solyc01g073870.2.1 (e_value=5e-73) genomic_reference:SL2.40ch01 gene_region:70444404-70455870 transcript_region:SL2.40ch01:70444404..70455870- functional_description:"ATP synthase subunit-like protein (AHRD V1 *-*- Q6YWH6_ORYSJ)"; NbS00009004g0012.1 protein NbS00024707g0005.1 protein NbS00024554g0006.1 protein NbS00050616g0003.1 protein NbS00022233g0011.1 protein NbS00022233g0007.1 protein NbS00022233g0008.1 protein NbS00050859g0002.1 protein NbS00018967g0008.1 protein ; (*GB) gi|350537933|ref|NP_001234574.1| (e_value=9e-19) succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [Solanum lycopersicum];; (*SWP) sp|Q6DQL1|SUCA2_SOLLC (e_value=3e-20) Succinyl-CoA ligase [ADP-forming] subunit alpha-2, mitochondrial OS=Solanum lycopersicum PE=1 SV=1;; (*ITAG) Solyc02g005350.2.1 (e_value=2e-21) genomic_reference:SL2.40ch02 gene_region:2285566-2310956 transcript_region:SL2.40ch02:2285566..2310956- go_terms:GO:0005507 functional_description:"Succinyl-CoA ligase (AHRD V1 ***- B9RL91_RICCO); contains Interpro domain(s) IPR005810 Succinyl-CoA ligase, alpha subunit "; GO:0005507 NbS00018967g0009.1 protein NbS00012615g0006.1 protein NbS00012615g0009.1 protein NbS00058404g0001.1 protein NbS00002417g0002.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=6e-14) PREDICTED: uncharacterized protein LOC100811508 [Glycine max]; NbS00034643g0003.1 protein NbS00034882g0012.1 protein NbS00034882g0007.1 protein NbS00023368g0006.1 protein NbS00009598g0003.1 protein NbS00033325g0002.1 protein NbS00002452g0013.1 protein NbS00002452g0015.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=1e-38) conserved hypothetical protein [Ricinus communis]; NbS00002452g0018.1 protein ; (*GB) gi|255581870|ref|XP_002531735.1| (e_value=3e-22) conserved hypothetical protein [Ricinus communis]; NbS00002452g0019.1 protein NbS00002452g0020.1 protein ; (*GB) gi|224104839|ref|XP_002333891.1| (e_value=3e-15) predicted protein [Populus trichocarpa]; NbS00002452g0007.1 protein ; (*GB) gi|57014014|ref|YP_173485.1| (e_value=1e-32) ribosomal protein L2 [Nicotiana tabacum];; (*SWP) sp|P93311|RM02_ARATH (e_value=4e-22) 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1;; (*ITAG) ATMG00560.1 (e_value=3e-23) | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like protein | chrM:154744-157345 FORWARD LENGTH=349;; (*ITAG) Solyc00g022110.2.1 (e_value=8e-34) genomic_reference:SL2.40ch00 gene_region:12012909-12016317 transcript_region:SL2.40ch00:12012909..12016317- go_terms:GO:0005840 functional_description:"Ribosomal protein L2 (AHRD V1 ***- Q5M9S7_TOBAC); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00009106g0006.1 protein NbS00009106g0009.1 protein NbS00007267g0001.1 protein ; (*GB) gi|118484619|gb|ABK94182.1| (e_value=4e-20) unknown [Populus trichocarpa];; (*SWP) sp|Q9LHQ5|H2A2_ARATH (e_value=7e-21) Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1;; (*TAIR) AT3G20670.1 (e_value=6e-22) | Symbols: HTA13 | histone H2A 13 | chr3:7229472-7229963 FORWARD LENGTH=132;; (*ITAG) Solyc12g005270.1.1 (e_value=2e-22) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- go_terms:GO:0005634,GO:0003677 functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "; GO:0005634,GO:0003677 NbS00007267g0002.1 protein NbS00043672g0002.1 protein NbS00015851g0004.1 protein ; (*GB) gi|297741712|emb|CBI32844.3| (e_value=4e-33) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G41020.2 (e_value=2e-24) | Symbols: | WW domain-containing protein | chr2:17117425-17120012 FORWARD LENGTH=382;; (*ITAG) Solyc11g005110.1.1 (e_value=2e-115) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:92574-105206 transcript_region:SL2.40ch11:92574..105206- go_terms:GO:0005515 functional_description:"Polyglutamine binding protein 1 (AHRD V1 *-*- A2AER7_MOUSE); contains Interpro domain(s) IPR001202 WW/Rsp5/WWP "; GO:0005515 NbS00015851g0008.1 protein NbS00027827g0004.1 protein NbC24885311g0002.1 protein ; (*GB) gi|10798754|dbj|BAB16429.1| (e_value=3e-34) NtEIG-A1 [Nicotiana tabacum];; (*ITAG) Solyc03g116700.2.1 (e_value=5e-21) genomic_reference:SL2.40ch03 gene_region:60045919-60046748 transcript_region:SL2.40ch03:60045919..60046748+ go_terms:GO:0005515 functional_description:"Blue copper protein (AHRD V1 **-- D1MWY8_CITLA); contains Interpro domain(s) IPR003245 Plastocyanin-like "; GO:0005515 NbS00026036g0006.1 protein NbS00000252g0003.1 protein NbS00014078g0004.1 protein NbS00005411g0010.1 protein NbS00003743g0013.1 protein NbS00003743g0018.1 protein NbS00027210g0002.1 protein NbS00021824g0004.1 protein NbS00008985g0009.1 protein ; (*GB) gi|356560517|ref|XP_003548538.1| (e_value=1e-78) PREDICTED: kelch repeat-containing protein At3g27220-like [Glycine max];; (*SWP) sp|Q9LK31|Y3272_ARATH (e_value=1e-70) Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1;; (*TAIR) AT1G51540.1 (e_value=6e-75) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:19115702-19117381 FORWARD LENGTH=415;; (*ITAG) Solyc02g093910.2.1 (e_value=4e-88) genomic_reference:SL2.40ch02 gene_region:49183590-49186451 transcript_region:SL2.40ch02:49183590..49186451+ go_terms:GO:0005515 functional_description:"Kelch repeat-containing protein-like (AHRD V1 ***- Q6ZK44_ORYSJ); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; GO:0005515 NbS00008985g0111.1 protein NbS00008985g0206.1 protein NbS00053960g0003.1 protein NbS00053960g0004.1 protein ; (*GB) gi|359483114|ref|XP_002274515.2| (e_value=9e-27) PREDICTED: zinc finger CCCH domain-containing protein 16-like [Vitis vinifera];; (*SWP) sp|Q9FWS3|C3H16_ARATH (e_value=5e-13) Zinc finger CCCH domain-containing protein 16 OS=Arabidopsis thaliana GN=At1g75340 PE=2 SV=2;; (*TAIR) AT1G75340.1 (e_value=4e-14) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:28269153-28271873 REVERSE LENGTH=435;; (*ITAG) Solyc12g009390.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:2674220-2680864 transcript_region:SL2.40ch12:2674220..2680864- go_terms:GO:0008270 functional_description:"Zinc finger CCCH domain-containing protein 16 (AHRD V1 *-*- C3H16_ARATH); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0008270 NbS00008336g0006.1 protein NbS00017750g0002.1 protein NbS00011995g0003.1 protein NbS00000415g0001.1 protein NbS00000415g0002.1 protein NbS00048487g0004.1 protein NbS00024798g0003.1 protein NbS00034499g0008.1 protein NbS00034499g0010.1 protein ; (*GB) gi|302142043|emb|CBI19246.3| (e_value=3e-50) unnamed protein product [Vitis vinifera];; (*TAIR) AT4G24580.1 (e_value=1e-50) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=3e-49) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00008995g0004.1 protein NbS00026654g0006.1 protein NbS00026654g0007.1 protein ; (*TAIR) AT1G60660.1 (e_value=4e-16) | Symbols: B5 #5, ATCB5LP, CB5LP | cytochrome B5-like protein | chr1:22342589-22342954 REVERSE LENGTH=121;; (*ITAG) Solyc12g008470.1.1 (e_value=3e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:1884634-1886386 transcript_region:SL2.40ch12:1884634..1886386+ go_terms:GO:0020037 functional_description:"Cytochrome b5 reductase (AHRD V1 **-- Q54XV1_DICDI); contains Interpro domain(s) IPR001199 Cytochrome b5 "; GO:0020037 NbS00005883g0001.1 protein NbS00005006g0004.1 protein NbS00000255g0008.1 protein NbS00007668g0006.1 protein NbS00007668g0007.1 protein NbS00037301g0003.1 protein NbS00042345g0001.1 protein NbS00000987g0005.1 protein NbS00000987g0008.1 protein NbS00008239g0001.1 protein NbS00030338g0001.1 protein NbS00030338g0002.1 protein NbS00018241g0009.1 protein ; (*ITAG) Solyc12g042340.1.1 (e_value=3e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:42923683-42926664 transcript_region:SL2.40ch12:42923683..42926664- functional_description:"Genomic DNA chromosome 5 P1 clone MAC9 (AHRD V1 ***- Q9FLS4_ARATH)"; NbS00018241g0010.1 protein ; (*ITAG) Solyc07g062390.2.1 (e_value=8e-14) genomic_reference:SL2.40ch07 gene_region:62379498-62385146 transcript_region:SL2.40ch07:62379498..62385146+ go_terms:GO:0003700,GO:0008081 functional_description:"Tubby-like F-box protein 7 (AHRD V1 ***- TLP7_ARATH); contains Interpro domain(s) IPR000007 Tubby, C-terminal "; GO:0003700,GO:0008081 NbS00018768g0002.1 protein NbS00018768g0003.1 protein NbS00018768g0004.1 protein NbS00051592g0002.1 protein ; (*GB) gi|225465259|ref|XP_002268804.1| (e_value=6e-70) PREDICTED: 3-oxoacyl-[acyl-carrier-protein] reductase FabG-like [Vitis vinifera];; (*SWP) sp|P0A0I0|FABG_STAAW (e_value=1e-16) 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Staphylococcus aureus (strain MW2) GN=fabG PE=3 SV=1;; (*TAIR) AT1G10310.1 (e_value=9e-66) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr1:3381733-3383874 REVERSE LENGTH=242;; (*ITAG) Solyc01g103100.2.1 (e_value=2e-79) genomic_reference:SL2.40ch01 gene_region:83528327-83534064 transcript_region:SL2.40ch01:83528327..83534064+ go_terms:GO:0042803 functional_description:"Short-chain dehydrogenase/reductase SDR (AHRD V1 ***- A6C8Y5_9PLAN); contains Interpro domain(s) IPR002347 Glucose/ribitol dehydrogenase "; GO:0042803 NbS00043420g0007.1 protein NbS00043420g0008.1 protein NbS00005860g0004.1 protein ; (*ITAG) Solyc06g009240.2.1 (e_value=1e-25) genomic_reference:SL2.40ch06 gene_region:3202304-3205141 transcript_region:SL2.40ch06:3202304..3205141- go_terms:GO:0015385 functional_description:"Cation/H(+) antiporter 15 (AHRD V1 **** CHX15_ARATH); contains Interpro domain(s) IPR006153 Cation/H+ exchanger "; GO:0015385 NbS00061435g0001.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=1e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00040838g0014.1 protein ; (*GB) gi|224118582|ref|XP_002317856.1| (e_value=2e-63) predicted protein [Populus trichocarpa];; (*TAIR) AT4G27860.2 (e_value=6e-45) | Symbols: | vacuolar iron transporter (VIT) family protein | chr4:13873808-13876240 FORWARD LENGTH=596;; (*ITAG) Solyc03g096800.2.1 (e_value=1e-173) genomic_reference:SL2.40ch03 gene_region:52599162-52609670 transcript_region:SL2.40ch03:52599162..52609670+ functional_description:"At5g24290-like protein (Fragment) (AHRD V1 *-*- Q45H28_ARALY); contains Interpro domain(s) IPR008217 Protein of unknown function DUF125, transmembrane "; NbS00040838g0009.1 protein ; (*GB) gi|255549212|ref|XP_002515660.1| (e_value=2e-31) multidrug resistance protein 1, 2, putative [Ricinus communis];; (*ITAG) Solyc06g072960.1.1 (e_value=6e-36) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41356312-41361535 transcript_region:SL2.40ch06:41356312..41361535+ go_terms:GO:0010329 functional_description:"Lipid A export ATP-binding/permease protein msbA (AHRD V1 *--- MSBA_SYNAS); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0010329 NbS00035663g0005.1 protein ; (*GB) gi|224069880|ref|XP_002303068.1| (e_value=4e-19) predicted protein [Populus trichocarpa]; NbS00035663g0008.1 protein NbS00035663g0010.1 protein ; (*GB) gi|224069878|ref|XP_002303067.1| (e_value=8e-16) predicted protein [Populus trichocarpa];; (*ITAG) Solyc09g057570.2.1 (e_value=1e-32) genomic_reference:SL2.40ch09 gene_region:45432130-45436612 transcript_region:SL2.40ch09:45432130..45436612- functional_description:"Mutator-like transposase (AHRD V1 ***- Q9LTL3_ARATH)"; NbS00015988g0005.1 protein NbS00000584g0003.1 protein NbS00000859g0003.1 protein ; (*GB) gi|224131634|ref|XP_002321139.1| (e_value=8e-20) predicted protein [Populus trichocarpa];; (*TAIR) AT3G21620.1 (e_value=1e-21) | Symbols: | ERD (early-responsive to dehydration stress) family protein | chr3:7611044-7614041 REVERSE LENGTH=756;; (*ITAG) Solyc07g048110.2.1 (e_value=4e-21) genomic_reference:SL2.40ch07 gene_region:56620600-56630095 transcript_region:SL2.40ch07:56620600..56630095- go_terms:GO:0016020 functional_description:"Uncharacterized membrane protein C24H6.13 (AHRD V1 **-- YA7D_SCHPO); contains Interpro domain(s) IPR003864 Protein of unknown function DUF221 "; GO:0016020 NbS00022076g0004.1 protein NbS00022076g0107.1 protein NbS00027488g0003.1 protein ; (*GB) gi|242065384|ref|XP_002453981.1| (e_value=4e-28) hypothetical protein SORBIDRAFT_04g022660 [Sorghum bicolor];; (*SWP) sp|Q54TE7|GPN2_DICDI (e_value=4e-19) GPN-loop GTPase 2 homolog OS=Dictyostelium discoideum GN=gpn2 PE=2 SV=1;; (*TAIR) AT5G22370.2 (e_value=2e-28) | Symbols: EMB1705, QQT1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7406587-7408509 FORWARD LENGTH=298;; (*ITAG) Solyc04g077790.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:60280469-60284621 transcript_region:SL2.40ch04:60280469..60284621+ go_terms:GO:0005515,GO:0005524 functional_description:"GPN-loop GTPase 2 (AHRD V1 ***- A2A9E9_MOUSE); contains Interpro domain(s) IPR004130 Protein of unknown function, ATP binding "; GO:0005515,GO:0005524 NbS00014003g0003.1 protein NbS00000882g0003.1 protein NbC25023538g0001.1 protein ; (*GB) gi|23429644|gb|AAN10199.1| (e_value=6e-66) endoxylanase [Carica papaya];; (*TAIR) AT4G33840.1 (e_value=5e-61) | Symbols: | Glycosyl hydrolase family 10 protein | chr4:16223694-16226095 REVERSE LENGTH=576;; (*ITAG) Solyc01g106980.1.1 (e_value=4e-90) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:86437864-86444498 transcript_region:SL2.40ch01:86437864..86444498- go_terms:GO:0005515 functional_description:"Endo-1 4-beta-xylanase (AHRD V1 *--- B6SW51_MAIZE); contains Interpro domain(s) IPR013781 Glycoside hydrolase, subgroup, catalytic core "; GO:0005515 NbS00008597g0003.1 protein ; (*ITAG) Solyc02g067970.2.1 (e_value=2e-13) genomic_reference:SL2.40ch02 gene_region:32614978-32617264 transcript_region:SL2.40ch02:32614978..32617264- go_terms:GO:0008270 functional_description:"Tripartite motif-containing 25 (AHRD V1 *--- Q6P7B3_RAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00008597g0004.1 protein NbS00017978g0001.1 protein NbS00034712g0002.1 protein NbS00003568g0003.1 protein ; (*ITAG) Solyc07g005580.2.1 (e_value=5e-14) genomic_reference:SL2.40ch07 gene_region:458171-464650 transcript_region:SL2.40ch07:458171..464650+ go_terms:GO:0003841 functional_description:"1-acyl-sn-glycerol-3-phosphate acyltransferase (AHRD V1 **** A0LIN1_SYNFM); contains Interpro domain(s) IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase "; GO:0003841 NbS00003989g0007.1 protein NbS00003989g0105.1 protein NbS00010125g0005.1 protein NbS00018084g0011.1 protein NbS00018084g0010.1 protein NbS00022198g0002.1 protein NbS00015041g0002.1 protein NbS00057073g0004.1 protein NbS00008609g0012.1 protein NbS00055776g0006.1 protein NbS00019549g0004.1 protein NbS00021266g0003.1 protein NbS00021266g0005.1 protein NbS00029493g0005.1 protein NbS00017207g0002.1 protein ; (*GB) gi|359488959|ref|XP_003633847.1| (e_value=7e-23) PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera];; (*SWP) sp|Q9LF41|UBE4_ARATH (e_value=2e-23) Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1;; (*TAIR) AT5G15400.1 (e_value=1e-24) | Symbols: | U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038;; (*ITAG) Solyc02g088550.2.1 (e_value=3e-25) genomic_reference:SL2.40ch02 gene_region:45173929-45183799 transcript_region:SL2.40ch02:45173929..45183799- go_terms:GO:0000151 functional_description:"Ubiquitin conjugation factor E4 A (AHRD V1 ***- B0W2D1_CULQU); contains Interpro domain(s) IPR019474 Ubiquitin conjugation factor E4, core "; GO:0000151 NbS00017207g0003.1 protein NbS00005825g0004.1 protein NbS00005825g0008.1 protein NbS00008032g0005.1 protein NbS00008032g0006.1 protein ; (*GB) gi|255589962|ref|XP_002535139.1| (e_value=4e-16) conserved hypothetical protein [Ricinus communis]; NbS00039725g0002.1 protein NbS00002564g0009.1 protein NbS00014838g0006.1 protein ; (*GB) gi|147815260|emb|CAN74430.1| (e_value=2e-33) hypothetical protein VITISV_010987 [Vitis vinifera]; NbS00052589g0002.1 protein NbS00047548g0001.1 protein NbC26069720g0001.1 protein ; (*GB) gi|255539216|ref|XP_002510673.1| (e_value=4e-30) small nuclear ribonucleoprotein, putative [Ricinus communis];; (*SWP) sp|P62323|SMD3_XENLA (e_value=2e-17) Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1;; (*TAIR) AT1G20580.1 (e_value=1e-31) | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128979-7130371 FORWARD LENGTH=131;; (*ITAG) Solyc03g033600.2.1 (e_value=7e-34) genomic_reference:SL2.40ch03 gene_region:9439178-9442447 transcript_region:SL2.40ch03:9439178..9442447- go_terms:GO:0003729,GO:0019899 functional_description:"Small nuclear ribonucleoprotein Sm D3 (AHRD V1 ***- B6UDW2_MAIZE); contains Interpro domain(s) IPR006649 Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core "; GO:0003729,GO:0019899 NbS00016611g0002.1 protein NbS00022878g0011.1 protein NbS00022878g0013.1 protein NbS00034892g0004.1 protein NbS00034892g0008.1 protein ; (*GB) gi|225465381|ref|XP_002273703.1| (e_value=3e-30) PREDICTED: subtilisin-like protease [Vitis vinifera];; (*SWP) sp|Q39547|CUCM1_CUCME (e_value=2e-22) Cucumisin OS=Cucumis melo PE=1 SV=1;; (*TAIR) AT1G20150.1 (e_value=5e-27) | Symbols: | Subtilisin-like serine endopeptidase family protein | chr1:6987332-6990361 REVERSE LENGTH=780;; (*ITAG) Solyc01g096560.1.1 (e_value=3e-48) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79398896-79403053 transcript_region:SL2.40ch01:79398896..79403053+ go_terms:GO:0006508,GO:0043086 functional_description:"Subtilisin-like protease (AHRD V1 ***- Q9ZSP5_ARATH); contains Interpro domain(s) IPR015500 Peptidase S8, subtilisin-related "; GO:0006508,GO:0043086 NbS00023585g0005.1 protein ; (*GB) gi|255560938|ref|XP_002521482.1| (e_value=1e-14) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc02g093420.2.1 (e_value=1e-30) genomic_reference:SL2.40ch02 gene_region:48873416-48876572 transcript_region:SL2.40ch02:48873416..48876572+ go_terms:GO:0003700 functional_description:"NAC domain class transcription factor (AHRD V1 *-** D9ZJ99_MALDO); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbC25427771g0002.1 protein ; (*GB) gi|15238899|ref|NP_196653.1| (e_value=2e-36) argininosuccinate lyase [Arabidopsis thaliana];; (*SWP) sp|B1J1V0|ARLY_PSEPW (e_value=5e-22) Argininosuccinate lyase OS=Pseudomonas putida (strain W619) GN=argH PE=3 SV=1;; (*TAIR) AT5G10920.1 (e_value=4e-39) | Symbols: | L-Aspartase-like family protein | chr5:3441805-3443892 FORWARD LENGTH=517;; (*ITAG) Solyc04g076320.2.1 (e_value=1e-45) genomic_reference:SL2.40ch04 gene_region:58832132-58836418 transcript_region:SL2.40ch04:58832132..58836418- go_terms:GO:0004056 functional_description:"Argininosuccinate lyase (AHRD V1 **** O23637_ARATH); contains Interpro domain(s) IPR009049 Argininosuccinate lyase "; GO:0004056 NbS00009961g0002.1 protein NbS00009961g0005.1 protein NbS00021050g0003.1 protein ; (*ITAG) Solyc01g058360.1.1 (e_value=5e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:59232114-59236773 transcript_region:SL2.40ch01:59232114..59236773+ go_terms:GO:0055085 functional_description:"Major facilitator superfamily transporter (AHRD V1 **-- A8NUY3_COPC7); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0055085 NbS00033062g0007.1 protein NbS00057052g0003.1 protein NbS00012752g0002.1 protein NbS00002378g0003.1 protein NbS00003215g0004.1 protein ; (*ITAG) Solyc03g051780.1.1 (e_value=2e-16) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:18747870-18751039 transcript_region:SL2.40ch03:18747870..18751039+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L1I2_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00007956g0005.1 protein ; (*ITAG) Solyc06g035800.1.1 (e_value=5e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:21731294-21731659 transcript_region:SL2.40ch06:21731294..21731659- functional_description:"Unknown Protein (AHRD V1)"; NbS00007956g0007.1 protein NbS00053594g0002.1 protein NbS00061964g0002.1 protein NbS00008686g0005.1 protein NbS00035263g0002.1 protein NbS00017077g0011.1 protein ; (*GB) gi|296083691|emb|CBI23680.3| (e_value=7e-22) unnamed protein product [Vitis vinifera]; NbS00017077g0013.1 protein NbS00017077g0015.1 protein NbS00017077g0008.1 protein NbS00003177g0002.1 protein NbS00003177g0111.1 protein NbS00033395g0003.1 protein NbS00033395g0005.1 protein NbS00033395g0007.1 protein NbS00008934g0002.1 protein NbS00010312g0006.1 protein NbS00010312g0008.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00010312g0010.1 protein NbS00013785g0003.1 protein NbS00037254g0001.1 protein ; (*GB) gi|3047114|gb|AAC13625.1| (e_value=1e-30) F6N23.24 gene product [Arabidopsis thaliana];; (*SWP) sp|Q6DW75|DGDG2_SOYBN (e_value=7e-32) Digalactosyldiacylglycerol synthase 2, chloroplastic OS=Glycine max GN=DGD2 PE=2 SV=1;; (*TAIR) AT4G00550.1 (e_value=1e-32) | Symbols: DGD2 | digalactosyl diacylglycerol deficient 2 | chr4:238154-240019 REVERSE LENGTH=473;; (*ITAG) Solyc01g094170.2.1 (e_value=8e-38) genomic_reference:SL2.40ch01 gene_region:77502185-77507721 transcript_region:SL2.40ch01:77502185..77507721- go_terms:GO:0035250,GO:0046480 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250,GO:0046480 NbS00037254g0003.1 protein ; (*ITAG) Solyc01g094170.2.1 (e_value=9e-23) genomic_reference:SL2.40ch01 gene_region:77502185-77507721 transcript_region:SL2.40ch01:77502185..77507721- go_terms:GO:0035250,GO:0046480 functional_description:"Digalactosyldiacylglycerol synthase 2, chloroplastic (AHRD V1 ***- DGDG2_LOTJA); contains Interpro domain(s) IPR001296 Glycosyl transferase, group 1 "; GO:0035250,GO:0046480 NbS00052074g0002.1 protein NbS00048698g0007.1 protein NbS00048698g0009.1 protein NbS00041184g0001.1 protein ; (*ITAG) Solyc03g113350.2.1 (e_value=2e-17) genomic_reference:SL2.40ch03 gene_region:57552366-57558840 transcript_region:SL2.40ch03:57552366..57558840+ go_terms:GO:0008270 functional_description:"CHY zinc finger containing protein (AHRD V1 *-*- C5P643_COCP7); contains Interpro domain(s) IPR008913 Zinc finger, CHY-type "; GO:0008270 NbS00007068g0008.1 protein ; (*GB) gi|356574834|ref|XP_003555549.1| (e_value=3e-58) PREDICTED: probable lysine-specific demethylase JMJ14-like [Glycine max];; (*SWP) sp|Q8GUI6|JMJ14_ARATH (e_value=8e-55) Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14 PE=1 SV=1;; (*TAIR) AT1G30810.2 (e_value=1e-58) | Symbols: | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | chr1:10938139-10941505 REVERSE LENGTH=819;; (*ITAG) Solyc02g069740.2.1 (e_value=2e-72) genomic_reference:SL2.40ch02 gene_region:34130140-34138107 transcript_region:SL2.40ch02:34130140..34138107+ go_terms:GO:0003700 functional_description:"Lysine-specific demethylase 5B (AHRD V1 *--- KDM5B_MOUSE); contains Interpro domain(s) IPR013129 Transcription factor jumonji "; GO:0003700 NbS00007068g0009.1 protein NbS00007488g0013.1 protein NbS00007488g0010.1 protein NbS00012893g0004.1 protein NbS00047611g0001.1 protein NbS00006141g0111.1 protein NbS00006141g0112.1 protein NbS00006141g0107.1 protein NbS00006141g0108.1 protein NbS00004035g0003.1 protein NbS00016539g0006.1 protein NbS00016539g0009.1 protein NbS00007614g0004.1 protein ; (*GB) gi|255570069|ref|XP_002525997.1| (e_value=1e-44) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q68F38|VAC14_XENLA (e_value=6e-17) Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1;; (*TAIR) AT2G01690.1 (e_value=5e-39) | Symbols: | ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743;; (*ITAG) Solyc05g017860.2.1 (e_value=2e-51) genomic_reference:SL2.40ch05 gene_region:18730429-18754023 transcript_region:SL2.40ch05:18730429..18754023- go_terms:GO:0030674 functional_description:"Protein VAC14 homolog (AHRD V1 **-- VAC14_XENLA); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0030674 NbS00007614g0009.1 protein ; (*GB) gi|356502380|ref|XP_003519997.1| (e_value=3e-38) PREDICTED: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase-like [Glycine max];; (*SWP) sp|P0C2G7|LPXC_ARATH (e_value=4e-35) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Arabidopsis thaliana GN=At1g24793 PE=2 SV=1;; (*TAIR) AT1G24793.2 (e_value=3e-37) | Symbols: | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein | chr1:8767581-8768922 FORWARD LENGTH=266;; (*ITAG) Solyc07g008850.2.1 (e_value=1e-43) genomic_reference:SL2.40ch07 gene_region:3825382-3832232 transcript_region:SL2.40ch07:3825382..3832232- go_terms:GO:0009245 functional_description:"UDP-3-O- (AHRD V1 ***- B9SJ32_RICCO); contains Interpro domain(s) IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase "; GO:0009245 NbS00012722g0003.1 protein NbS00012722g0005.1 protein NbS00054623g0003.1 protein NbS00018545g0003.1 protein NbS00016092g0004.1 protein NbS00016092g0008.1 protein NbS00019595g0005.1 protein NbS00055064g0003.1 protein NbS00004631g0001.1 protein NbS00004990g0004.1 protein ; (*GB) gi|356576388|ref|XP_003556314.1| (e_value=5e-23) PREDICTED: nudix hydrolase 26, chloroplastic-like [Glycine max];; (*SWP) sp|Q9CAF2|NUD26_ARATH (e_value=1e-21) Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1;; (*TAIR) AT3G10620.1 (e_value=1e-22) | Symbols: ATNUDX26, NUDX26 | nudix hydrolase homolog 26 | chr3:3320263-3321565 FORWARD LENGTH=216;; (*ITAG) Solyc11g006580.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:1210739-1214519 transcript_region:SL2.40ch11:1210739..1214519- go_terms:GO:0016787 functional_description:"RNA pyrophosphohydrolase (AHRD V1 ***- C9CZW5_9RHOB); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0016787 NbS00008040g0001.1 protein NbS00000490g0003.1 protein NbS00029834g0002.1 protein ; (*GB) gi|225441183|ref|XP_002266033.1| (e_value=4e-34) PREDICTED: E3 ubiquitin-protein ligase RFWD3-like [Vitis vinifera];; (*TAIR) AT5G03450.1 (e_value=3e-28) | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:858954-862238 REVERSE LENGTH=630;; (*ITAG) Solyc09g008330.2.1 (e_value=1e-53) genomic_reference:SL2.40ch09 gene_region:1794415-1803879 transcript_region:SL2.40ch09:1794415..1803879- go_terms:GO:0008270 functional_description:"E3 ubiquitin-protein ligase RFWD3 (AHRD V1 *--- RFWD3_HUMAN); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00008678g0001.1 protein NbS00016574g0002.1 protein NbS00007784g0001.1 protein NbS00001765g0013.1 protein ; (*GB) gi|224131898|ref|XP_002328135.1| (e_value=4e-94) predicted protein [Populus trichocarpa];; (*SWP) sp|A4SGN0|KHSE_PROVI (e_value=3e-23) Homoserine kinase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=thrB PE=3 SV=1;; (*TAIR) AT2G17265.1 (e_value=1e-80) | Symbols: HSK, DMR1 | homoserine kinase | chr2:7508606-7509718 FORWARD LENGTH=370;; (*ITAG) Solyc04g008760.1.1 (e_value=3e-107) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:2412878-2414011 transcript_region:SL2.40ch04:2412878..2414011+ go_terms:GO:0004413 functional_description:"Homoserine kinase (AHRD V1 **** D2DKF1_SOYBN); contains Interpro domain(s) IPR000870 Homoserine kinase "; GO:0004413 NbS00024501g0003.1 protein ; (*GB) gi|113205247|gb|AAT39965.2| (e_value=4e-16) hypothetical protein SDM1_29t00005 [Solanum demissum]; NbS00031842g0005.1 protein ; (*GB) gi|224117686|ref|XP_002331606.1| (e_value=1e-13) predicted protein [Populus trichocarpa];; (*ITAG) Solyc00g006090.1.1 (e_value=2e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:4009712-4010700 transcript_region:SL2.40ch00:4009712..4010700+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00031842g0008.1 protein NbS00051552g0003.1 protein NbS00014936g0006.1 protein ; (*GB) gi|255557439|ref|XP_002519750.1| (e_value=3e-22) RNA-binding protein, putative [Ricinus communis];; (*SWP) sp|Q8VWF5|AML5_ARATH (e_value=8e-21) Protein MEI2-like 5 OS=Arabidopsis thaliana GN=ML5 PE=1 SV=1;; (*TAIR) AT1G29400.2 (e_value=6e-22) | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10290393-10293696 REVERSE LENGTH=800;; (*ITAG) Solyc10g007770.2.1 (e_value=9e-26) genomic_reference:SL2.40ch10 gene_region:1999586-2005684 transcript_region:SL2.40ch10:1999586..2005684- go_terms:GO:0003723 functional_description:"Polyadenylate-binding protein 1-like (AHRD V1 *--* PAP1L_HUMAN); contains Interpro domain(s) IPR007201 RNA recognition motif 2 "; GO:0003723 NbS00038058g0004.1 protein NbS00025239g0005.1 protein NbS00013685g0011.1 protein NbS00001653g0003.1 protein NbS00001653g0107.1 protein NbS00045502g0001.1 protein NbS00022146g0005.1 protein NbS00022146g0007.1 protein ; (*GB) gi|34452671|gb|AAQ72727.1| (e_value=1e-16) putative gag-pol polyprotein [Petunia x hybrida]; NbS00014428g0003.1 protein NbS00028514g0002.1 protein NbS00036999g0005.1 protein NbS00000283g0013.1 protein NbS00000283g0016.1 protein NbS00036814g0005.1 protein ; (*ITAG) Solyc07g008350.2.1 (e_value=5e-19) genomic_reference:SL2.40ch07 gene_region:3130909-3139460 transcript_region:SL2.40ch07:3130909..3139460+ go_terms:GO:0008308 functional_description:"Porin/voltage-dependent anion-selective channel protein (AHRD V1 **** B9IM03_POPTR); contains Interpro domain(s) IPR001925 Porin, eukaryotic type "; GO:0008308 NbS00059267g0002.1 protein ; (*GB) gi|297733619|emb|CBI14866.3| (e_value=2e-19) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc10g006780.2.1 (e_value=2e-35) genomic_reference:SL2.40ch10 gene_region:1222546-1229429 transcript_region:SL2.40ch10:1222546..1229429- functional_description:"Telomere length regulation protein TEL2 homolog (AHRD V1 *-*- TELO2_MOUSE); contains Interpro domain(s) IPR019337 Telomere length regulation protein "; NbC25204749g0002.1 protein ; (*GB) gi|224090021|ref|XP_002308909.1| (e_value=3e-53) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9LZA6|SDP1_ARATH (e_value=1e-53) Triacylglycerol lipase SDP1 OS=Arabidopsis thaliana GN=SDP1 PE=1 SV=1;; (*TAIR) AT5G04040.1 (e_value=1e-54) | Symbols: SDP1 | Patatin-like phospholipase family protein | chr5:1090346-1093003 FORWARD LENGTH=825;; (*ITAG) Solyc10g079770.1.1 (e_value=7e-60) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60596094-60598539 transcript_region:SL2.40ch10:60596094..60598539- functional_description:"Patatin-like phospholipase domain-containing protein c (AHRD V1 *--- B6K1H8_SCHJY)"; NbS00003055g0002.1 protein NbS00003055g0006.1 protein NbS00003055g0007.1 protein NbS00008355g0010.1 protein NbS00044914g0003.1 protein NbS00011351g0005.1 protein NbS00011351g0006.1 protein NbS00054407g0007.1 protein NbS00003622g0211.1 protein NbS00003622g0205.1 protein NbS00003622g0209.1 protein NbS00047774g0004.1 protein ; (*GB) gi|13925881|gb|AAK49454.1|AF304374_1 (e_value=3e-38) cellulose synthase catalytic subunit [Nicotiana alata];; (*SWP) sp|O48947|CESA2_ARATH (e_value=3e-34) Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1;; (*TAIR) AT4G39350.1 (e_value=2e-35) | Symbols: CESA2, ATH-A, ATCESA2 | cellulose synthase A2 | chr4:18297078-18301890 FORWARD LENGTH=1084;; (*ITAG) Solyc04g071650.2.1 (e_value=2e-38) genomic_reference:SL2.40ch04 gene_region:56224073-56230776 transcript_region:SL2.40ch04:56224073..56230776+ go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** B9GTH4_POPTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00000742g0002.1 protein NbS00054116g0005.1 protein NbS00037403g0001.1 protein ; (*GB) gi|62733429|gb|AAX95546.1| (e_value=6e-44) Putative Not1 N-terminal protein [Oryza sativa Japonica Group];; (*SWP) sp|Q8K0V4|CNOT3_MOUSE (e_value=4e-29) CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1;; (*TAIR) AT5G18230.1 (e_value=2e-45) | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=843;; (*ITAG) Solyc12g019860.1.1 (e_value=6e-46) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:11996511-12027840 transcript_region:SL2.40ch12:11996511..12027840+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 3 (AHRD V1 *-*- Q7ZVL4_DANRE); contains Interpro domain(s) IPR012270 CCR4-NOT complex, subunit 3/ 5 "; GO:0005634 NbS00037403g0002.1 protein ; (*TAIR) AT5G18230.1 (e_value=1e-14) | Symbols: | transcription regulator NOT2/NOT3/NOT5 family protein | chr5:6021610-6027031 REVERSE LENGTH=843;; (*ITAG) Solyc12g019860.1.1 (e_value=9e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:11996511-12027840 transcript_region:SL2.40ch12:11996511..12027840+ go_terms:GO:0005634 functional_description:"CCR4-NOT transcription complex subunit 3 (AHRD V1 *-*- Q7ZVL4_DANRE); contains Interpro domain(s) IPR012270 CCR4-NOT complex, subunit 3/ 5 "; GO:0005634 NbS00057824g0001.1 protein NbS00002594g0009.1 protein NbS00022775g0005.1 protein NbS00001343g0112.1 protein NbS00001343g0110.1 protein NbS00012383g0006.1 protein NbS00016917g0104.1 protein NbS00016917g0105.1 protein NbS00058934g0001.1 protein NbS00029875g0001.1 protein NbS00008841g0002.1 protein NbS00023968g0001.1 protein NbS00002541g0001.1 protein NbS00007533g0003.1 protein ; (*GB) gi|15822693|gb|AAL03950.1| (e_value=3e-40) relA/spoT-like protein RSH2 [Nicotiana tabacum];; (*SWP) sp|P74007|SPOT_SYNY3 (e_value=5e-14) Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1;; (*TAIR) AT1G54130.1 (e_value=3e-32) | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3 | chr1:20211177-20213761 FORWARD LENGTH=715;; (*ITAG) Solyc03g123370.2.1 (e_value=3e-38) genomic_reference:SL2.40ch03 gene_region:64308451-64312367 transcript_region:SL2.40ch03:64308451..64312367+ go_terms:GO:0008728 functional_description:"(P)ppGpp synthetase I (GTP pyrophosphokinase) SpoT/RelA (AHRD V1 *--* Q2RHV7_MOOTA); contains Interpro domain(s) IPR007685 RelA/SpoT "; GO:0008728 NbS00023912g0004.1 protein NbS00025008g0004.1 protein NbS00000063g0006.1 protein NbS00000063g0008.1 protein NbS00000063g0010.1 protein NbS00007657g0001.1 protein ; (*GB) gi|346306029|gb|AEO22189.1| (e_value=1e-26) ABCG subfamily transporter protein [Solanum tuberosum];; (*SWP) sp|Q8GU88|PDR7_ORYSJ (e_value=2e-25) Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1;; (*TAIR) AT3G16340.2 (e_value=2e-24) | Symbols: PDR1 | pleiotropic drug resistance 1 | chr3:5539897-5546263 FORWARD LENGTH=1411;; (*ITAG) Solyc08g067620.2.1 (e_value=2e-29) genomic_reference:SL2.40ch08 gene_region:53842288-53848833 transcript_region:SL2.40ch08:53842288..53848833+ go_terms:GO:0042626 functional_description:"ATP-binding cassette transporter (AHRD V1 ***- D8RL77_SELML); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00009224g0009.1 protein NbS00036535g0001.1 protein NbS00005594g0004.1 protein NbS00035417g0007.1 protein ; (*GB) gi|224122008|ref|XP_002318727.1| (e_value=1e-47) predicted protein [Populus trichocarpa];; (*TAIR) AT5G50410.1 (e_value=1e-42) | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20528446-20529816 REVERSE LENGTH=259;; (*ITAG) Solyc03g112570.2.1 (e_value=4e-57) genomic_reference:SL2.40ch03 gene_region:57004448-57012692 transcript_region:SL2.40ch03:57004448..57012692+ functional_description:"Unknown Protein (AHRD V1)"; NbS00015431g0018.1 protein NbS00024714g0005.1 protein NbS00022509g0002.1 protein NbS00008080g0001.1 protein NbS00008080g0002.1 protein NbS00039555g0004.1 protein ; (*ITAG) Solyc04g045260.1.1 (e_value=5e-14) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:31171275-31174232 transcript_region:SL2.40ch04:31171275..31174232+ functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00007441g0001.1 protein NbS00005156g0003.1 protein NbS00005156g0004.1 protein NbS00023775g0008.1 protein NbS00045431g0005.1 protein NbS00045431g0006.1 protein NbC23300597g0001.1 protein ; (*GB) gi|297819816|ref|XP_002877791.1| (e_value=9e-34) 60S ribosomal protein L8 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q42064|RL83_ARATH (e_value=6e-35) 60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=1 SV=2;; (*TAIR) AT4G36130.1 (e_value=5e-36) | Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258;; (*ITAG) Solyc12g005330.1.1 (e_value=2e-35) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:208843-210348 transcript_region:SL2.40ch12:208843..210348+ go_terms:GO:0005840 functional_description:"50S ribosomal protein L2 (AHRD V1 ***- RL2_EDWI9); contains Interpro domain(s) IPR002171 Ribosomal protein L2 "; GO:0005840 NbS00001239g0003.1 protein NbS00017559g0106.1 protein NbS00040499g0018.1 protein ; (*GB) gi|359485993|ref|XP_002270228.2| (e_value=2e-103) PREDICTED: uncharacterized oxidoreductase ykwC-like [Vitis vinifera];; (*SWP) sp|O34948|YKWC_BACSU (e_value=5e-41) Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis (strain 168) GN=ykwC PE=3 SV=1;; (*TAIR) AT1G71170.1 (e_value=1e-76) | Symbols: | 6-phosphogluconate dehydrogenase family protein | chr1:26830673-26831572 FORWARD LENGTH=299;; (*ITAG) Solyc01g081510.2.1 (e_value=3e-138) genomic_reference:SL2.40ch01 gene_region:73219130-73220362 transcript_region:SL2.40ch01:73219130..73220362+ go_terms:GO:0050662,GO:0008152,GO:0016491,GO:0055114 functional_description:"3-hydroxyisobutyrate dehydrogenase (AHRD V1 ***- D8MAS0_BLAHO); contains Interpro domain(s) IPR015815 3-hydroxyacid dehydrogenase/reductase "; GO:0050662,GO:0008152,GO:0016491,GO:0055114 NbS00040499g0019.1 protein NbS00017852g0008.1 protein NbS00010152g0001.1 protein NbS00010152g0202.1 protein NbS00015665g0008.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=1e-30) hypothetical protein [Nicotiana tabacum]; NbS00038198g0002.1 protein NbS00038198g0003.1 protein NbS00007154g0003.1 protein ; (*GB) gi|359497206|ref|XP_002262853.2| (e_value=1e-53) PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Vitis vinifera];; (*SWP) sp|Q9SKU6|PP166_ARATH (e_value=1e-31) Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1;; (*TAIR) AT2G20710.2 (e_value=3e-33) | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:8926535-8927722 FORWARD LENGTH=395;; (*ITAG) Solyc02g078330.2.1 (e_value=4e-97) genomic_reference:SL2.40ch02 gene_region:37634979-37638173 transcript_region:SL2.40ch02:37634979..37638173- functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L4J3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00021818g0006.1 protein NbS00037827g0008.1 protein NbC25495038g0001.1 protein ; (*GB) gi|225432476|ref|XP_002279067.1| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100259662 [Vitis vinifera];; (*TAIR) AT2G20790.1 (e_value=4e-18) | Symbols: | clathrin adaptor complexes medium subunit family protein | chr2:8950162-8952613 REVERSE LENGTH=613;; (*ITAG) Solyc01g080360.2.1 (e_value=3e-37) genomic_reference:SL2.40ch01 gene_region:72102428-72119735 transcript_region:SL2.40ch01:72102428..72119735+ go_terms:GO:0030131 functional_description:"MHD domain-containing death-inducing protein (AHRD V1 *--- MUDEN_HUMAN); contains Interpro domain(s) IPR008968 Clathrin adaptor, mu subunit, C-terminal "; GO:0030131 NbS00007270g0004.1 protein NbS00007270g0006.1 protein NbS00025524g0001.1 protein NbS00012236g0006.1 protein NbS00012236g0008.1 protein ; (*GB) gi|225429088|ref|XP_002269031.1| (e_value=2e-15) PREDICTED: uncharacterized protein LOC100258411 [Vitis vinifera];; (*TAIR) AT1G53190.2 (e_value=2e-14) | Symbols: | RING/U-box superfamily protein | chr1:19838072-19840003 FORWARD LENGTH=494;; (*ITAG) Solyc10g007140.2.1 (e_value=2e-15) genomic_reference:SL2.40ch10 gene_region:1543949-1548850 transcript_region:SL2.40ch10:1543949..1548850+ go_terms:GO:0008270 functional_description:"RING-finger protein like (AHRD V1 *-*- B6SVN2_MAIZE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type "; GO:0008270 NbS00013979g0104.1 protein NbS00016697g0002.1 protein NbS00019656g0003.1 protein NbS00012543g0005.1 protein ; (*GB) gi|224142023|ref|XP_002324359.1| (e_value=4e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT5G10730.1 (e_value=6e-26) | Symbols: | NAD(P)-binding Rossmann-fold superfamily protein | chr5:3390822-3392947 REVERSE LENGTH=287;; (*ITAG) Solyc08g006510.2.1 (e_value=1e-34) genomic_reference:SL2.40ch08 gene_region:1108336-1124190 transcript_region:SL2.40ch08:1108336..1124190- go_terms:GO:0044237,GO:0008152 functional_description:"NAD dependent epimerase/dehydratase family protein (AHRD V1 **-- B6TVJ7_MAIZE); contains Interpro domain(s) IPR016040 NAD(P)-binding domain "; GO:0044237,GO:0008152 NbS00031611g0007.1 protein NbS00009216g0008.1 protein NbS00015334g0006.1 protein NbS00015334g0007.1 protein NbS00015334g0009.1 protein ; (*GB) gi|224090051|ref|XP_002308922.1| (e_value=3e-52) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9FYE5|PT504_ARATH (e_value=6e-50) Probable sugar phosphate/phosphate translocator At5g04160 OS=Arabidopsis thaliana GN=At5g04160 PE=2 SV=1;; (*TAIR) AT5G04160.1 (e_value=5e-51) | Symbols: | Nucleotide-sugar transporter family protein | chr5:1143033-1144777 REVERSE LENGTH=309;; (*ITAG) Solyc10g079280.1.1 (e_value=5e-63) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:60160912-60165192 transcript_region:SL2.40ch10:60160912..60165192+ go_terms:GO:0008514 functional_description:"Organic anion transporter (AHRD V1 **-* D7L9W2_ARALY); contains Interpro domain(s) IPR004853 Protein of unknown function DUF250 "; GO:0008514 NbS00000524g0011.1 protein NbS00000524g0008.1 protein NbS00000524g0010.1 protein NbS00040350g0003.1 protein NbS00004779g0003.1 protein ; (*GB) gi|224064547|ref|XP_002301513.1| (e_value=2e-19) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62390.1 (e_value=5e-18) | Symbols: TBL6 | TRICHOME BIREFRINGENCE-LIKE 6 | chr3:23087275-23089142 REVERSE LENGTH=475;; (*ITAG) Solyc01g079400.2.1 (e_value=2e-23) genomic_reference:SL2.40ch01 gene_region:70990975-70993949 transcript_region:SL2.40ch01:70990975..70993949- go_terms:GO:0031177 functional_description:"Os06g0207500 protein (Fragment) (AHRD V1 ***- Q0DDQ9_ORYSJ); contains Interpro domain(s) IPR004253 Protein of unknown function DUF231, plant "; GO:0031177 NbS00058347g0003.1 protein NbS00002000g0008.1 protein ; (*GB) gi|147772257|emb|CAN60637.1| (e_value=6e-16) hypothetical protein VITISV_022223 [Vitis vinifera]; NbS00039213g0004.1 protein NbS00010076g0006.1 protein NbS00056372g0003.1 protein NbS00044710g0005.1 protein NbS00022679g0004.1 protein NbS00009207g0008.1 protein NbS00015426g0006.1 protein NbS00007075g0011.1 protein NbS00023478g0002.1 protein NbS00028373g0007.1 protein NbS00028373g0009.1 protein ; (*ITAG) Solyc01g059760.1.1 (e_value=2e-22) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:61172554-61178067 transcript_region:SL2.40ch01:61172554..61178067+ go_terms:GO:0006508 functional_description:"Ulp1 protease family C-terminal catalytic domain containing protein (AHRD V1 *-*- Q60D46_SOLDE); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00004649g0111.1 protein NbS00006100g0005.1 protein ; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=6e-20) importin beta-3, putative [Ricinus communis];; (*TAIR) AT5G19820.1 (e_value=2e-16) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=3e-21) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00019500g0002.1 protein NbS00043783g0005.1 protein NbS00030620g0001.1 protein NbS00023052g0005.1 protein ; (*ITAG) Solyc03g095720.2.1 (e_value=1e-15) genomic_reference:SL2.40ch03 gene_region:50344450-50348825 transcript_region:SL2.40ch03:50344450..50348825- go_terms:GO:0005515,GO:0016944 functional_description:"Transcription elongation factor A protein 2 (AHRD V1 **** B6TCL2_MAIZE); contains Interpro domain(s) IPR006289 Transcription elongation factor, TFIIS "; GO:0005515,GO:0016944 NbS00009591g0001.1 protein NbS00031768g0005.1 protein NbS00014226g0004.1 protein NbS00016010g0006.1 protein NbS00032931g0004.1 protein NbS00018749g0003.1 protein NbS00002749g0111.1 protein NbS00002749g0118.1 protein NbS00038272g0004.1 protein NbS00051227g0004.1 protein NbS00011811g0002.1 protein NbS00011811g0004.1 protein NbS00052168g0004.1 protein ; (*GB) gi|225456159|ref|XP_002278561.1| (e_value=1e-146) PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera];; (*SWP) sp|Q8VZG8|Y4885_ARATH (e_value=6e-122) Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3;; (*TAIR) AT4G08850.2 (e_value=4e-123) | Symbols: | Leucine-rich repeat receptor-like protein kinase family protein | chr4:5637467-5640496 REVERSE LENGTH=1009;; (*ITAG) Solyc04g074000.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:57617787-57621291 transcript_region:SL2.40ch04:57617787..57621291- go_terms:GO:0005515,GO:0006468 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0006468 NbS00002224g0104.1 protein NbS00002224g0105.1 protein NbS00002224g0107.1 protein NbS00005074g0007.1 protein NbS00053168g0002.1 protein ; (*GB) gi|388501196|gb|AFK38664.1| (e_value=6e-14) unknown [Medicago truncatula];; (*SWP) sp|O82197|VP321_ARATH (e_value=3e-14) Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=1 SV=1;; (*TAIR) AT2G19830.1 (e_value=2e-15) | Symbols: SNF7.2, VPS32 | SNF7 family protein | chr2:8558101-8559389 REVERSE LENGTH=213;; (*ITAG) Solyc05g026050.2.1 (e_value=2e-15) genomic_reference:SL2.40ch05 gene_region:39648364-39651972 transcript_region:SL2.40ch05:39648364..39651972+ go_terms:GO:0042802 functional_description:"Charged multivesicular body protein 4b (AHRD V1 ***- B6UES0_MAIZE); contains Interpro domain(s) IPR005024 Snf7 "; GO:0042802 NbS00003190g0010.1 protein NbS00015479g0001.1 protein ; (*ITAG) Solyc12g098860.1.1 (e_value=2e-15) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:64576057-64587938 transcript_region:SL2.40ch12:64576057..64587938- go_terms:GO:0005524 functional_description:"DNA helicase (AHRD V1 *--- Q5CEI4_CRYHO); contains Interpro domain(s) IPR001650 DNA/RNA helicase, C-terminal "; GO:0005524 NbS00005218g0007.1 protein NbS00005291g0007.1 protein ; (*GB) gi|147853209|emb|CAN78548.1| (e_value=1e-134) hypothetical protein VITISV_000123 [Vitis vinifera];; (*TAIR) AT4G13750.1 (e_value=2e-88) | Symbols: NOV | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein | chr4:7975191-7987558 FORWARD LENGTH=2729;; (*ITAG) Solyc09g092100.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:66589275-66608601 transcript_region:SL2.40ch09:66589275..66608601+ go_terms:GO:0005524 functional_description:"Predicted CDS Pa_5_8110 (Fragment) (AHRD V1 *--- B2AKK2_PODAN); contains Interpro domain(s) IPR003594 ATP-binding region, ATPase-like "; GO:0005524 NbS00020330g0013.1 protein NbS00020330g0006.1 protein NbC24860155g0001.1 protein ; (*GB) gi|296081171|emb|CBI18197.3| (e_value=1e-42) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8S3U9|EXOC2_ARATH (e_value=8e-42) Exocyst complex component 2 OS=Arabidopsis thaliana GN=SEC5A PE=1 SV=1;; (*TAIR) AT1G21170.1 (e_value=3e-43) | Symbols: SEC5B | Exocyst complex component SEC5 | chr1:7413050-7419411 FORWARD LENGTH=1090;; (*ITAG) Solyc12g056520.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:47821594-47838915 transcript_region:SL2.40ch12:47821594..47838915- functional_description:"Exocyst complex component 2 (AHRD V1 ***- Q5SUZ6_MOUSE)"; NbS00042143g0001.1 protein NbC24172720g0001.1 protein ; (*GB) gi|297837067|ref|XP_002886415.1| (e_value=4e-58) ATNAP10 [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q9C8T1|AB1I_ARATH (e_value=2e-59) ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1;; (*TAIR) AT1G63270.1 (e_value=1e-60) | Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229;; (*ITAG) Solyc12g010220.1.1 (e_value=1e-62) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3340222-3340911 transcript_region:SL2.40ch12:3340222..3340911+ go_terms:GO:0030288,GO:0017111,GO:0016887 functional_description:"Cytochrome c biogenesis ATP-binding export protein ccmA-like (AHRD V1 ***- B6U3M9_MAIZE); contains Interpro domain(s) IPR005895 ABC transporter, haem export, CcmA "; GO:0030288,GO:0017111,GO:0016887 NbS00059457g0001.1 protein NbS00021926g0002.1 protein NbS00027281g0001.1 protein NbS00000779g0004.1 protein ; (*GB) gi|359490794|ref|XP_002267865.2| (e_value=7e-17) PREDICTED: glutamate synthase 1 [NADH], chloroplastic-like [Vitis vinifera];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=1e-16) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=1e-17) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=4e-19) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00000779g0005.1 protein NbS00044772g0001.1 protein ; (*ITAG) Solyc07g061780.2.1 (e_value=5e-42) genomic_reference:SL2.40ch07 gene_region:61956875-61964115 transcript_region:SL2.40ch07:61956875..61964115+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V1 *-** D7MB42_ARALY); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00046432g0004.1 protein NbS00002766g0004.1 protein NbS00012539g0003.1 protein NbS00051101g0003.1 protein ; (*GB) gi|42568003|ref|NP_197602.2| (e_value=9e-16) PAZ and piwi domain-containing protein [Arabidopsis thaliana];; (*SWP) sp|Q3E984|AGO8_ARATH (e_value=3e-17) Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1;; (*TAIR) AT5G21030.1 (e_value=2e-18) | Symbols: | PAZ domain-containing protein / piwi domain-containing protein | chr5:7139892-7144272 REVERSE LENGTH=850;; (*ITAG) Solyc01g096750.1.1 (e_value=6e-21) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:79536216-79540867 transcript_region:SL2.40ch01:79536216..79540867+ go_terms:GO:0019899 functional_description:"Argonaute 4-like protein (AHRD V1 ***- D5FQ91_PELHO); contains Interpro domain(s) IPR003165 Stem cell self-renewal protein Piwi "; GO:0019899 NbS00021198g0001.1 protein NbS00021198g0003.1 protein NbS00021198g0006.1 protein ; (*GB) gi|147815496|emb|CAN65992.1| (e_value=1e-21) hypothetical protein VITISV_042149 [Vitis vinifera]; NbC23764863g0001.1 protein ; (*GB) gi|113205451|gb|AAW28569.2| (e_value=2e-28) KH domain containing protein, putative [Solanum demissum];; (*TAIR) AT5G15270.1 (e_value=9e-18) | Symbols: | RNA-binding KH domain-containing protein | chr5:4958738-4960947 FORWARD LENGTH=548;; (*ITAG) Solyc05g007810.2.1 (e_value=1e-27) genomic_reference:SL2.40ch05 gene_region:2247886-2252833 transcript_region:SL2.40ch05:2247886..2252833- go_terms:GO:0003676 functional_description:"Nucleic acid binding protein (AHRD V1 **** B6UDK8_MAIZE); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup "; GO:0003676 NbS00024084g0004.1 protein NbS00044201g0002.1 protein NbS00000347g0002.1 protein NbS00000347g0003.1 protein NbS00021267g0011.1 protein NbS00029437g0001.1 protein NbS00029437g0002.1 protein ; (*GB) gi|357463243|ref|XP_003601903.1| (e_value=2e-15) RING-H2 finger protein [Medicago truncatula];; (*TAIR) AT1G67856.1 (e_value=1e-15) | Symbols: | RING/U-box superfamily protein | chr1:25442486-25442887 FORWARD LENGTH=133; NbS00048346g0003.1 protein NbS00009734g0004.1 protein NbS00009734g0005.1 protein NbS00009920g0002.1 protein NbS00000968g0007.1 protein ; (*GB) gi|193290726|gb|ACF17671.1| (e_value=1e-32) putative pyruvate dehydrogenase E2 subunit [Capsicum annuum];; (*SWP) sp|Q1RJT3|ODP2_RICBR (e_value=5e-14) Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1;; (*TAIR) AT1G34430.1 (e_value=2e-28) | Symbols: EMB3003 | 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465;; (*ITAG) Solyc11g017250.1.1 (e_value=3e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:8083498-8089958 transcript_region:SL2.40ch11:8083498..8089958+ go_terms:GO:0008152,GO:0016021 functional_description:"Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (AHRD V1 ***- A5GUY8_SYNR3); contains Interpro domain(s) IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain "; GO:0008152,GO:0016021 NbS00000968g0010.1 protein NbS00014878g0004.1 protein NbS00014239g0001.1 protein NbS00053392g0002.1 protein NbS00022468g0003.1 protein NbS00011193g0005.1 protein ; (*GB) gi|302143031|emb|CBI20326.3| (e_value=2e-24) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G52980.1 (e_value=5e-24) | Symbols: | GTP-binding family protein | chr1:19737493-19740201 FORWARD LENGTH=576;; (*ITAG) Solyc07g063270.2.1 (e_value=1e-29) genomic_reference:SL2.40ch07 gene_region:63008778-63014711 transcript_region:SL2.40ch07:63008778..63014711- go_terms:GO:0005515,GO:0003924 functional_description:"Nucleolar GTP-binding protein 2 (AHRD V1 **** B6TMG1_MAIZE); contains Interpro domain(s) IPR012971 NGP1, N-terminal "; GO:0005515,GO:0003924 NbS00014113g0004.1 protein NbS00009037g0004.1 protein NbS00009037g0006.1 protein NbS00003863g0007.1 protein NbS00028084g0001.1 protein ; (*GB) gi|623588|gb|AAA74118.1| (e_value=4e-31) putative [Nicotiana tabacum];; (*SWP) sp|O24461|RAB7_PRUAR (e_value=2e-31) Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1;; (*TAIR) AT1G49300.2 (e_value=4e-31) | Symbols: ATRAB7, ATRABG3E, RABG3E | RAB GTPase homolog G3E | chr1:18234842-18236968 FORWARD LENGTH=206;; (*ITAG) Solyc03g120750.2.1 (e_value=2e-33) genomic_reference:SL2.40ch03 gene_region:63080116-63084324 transcript_region:SL2.40ch03:63080116..63084324- go_terms:GO:0003924 functional_description:"Ras-related protein Rab-7 (AHRD V1 ***- C1BJT6_OSMMO); contains Interpro domain(s) IPR003579 Ras small GTPase, Rab type "; GO:0003924 NbS00012285g0002.1 protein NbS00009053g0001.1 protein ; (*GB) gi|357121813|ref|XP_003562612.1| (e_value=1e-57) PREDICTED: protein notum homolog isoform 2 [Brachypodium distachyon];; (*TAIR) AT4G19420.1 (e_value=6e-52) | Symbols: | Pectinacetylesterase family protein | chr4:10587504-10589807 REVERSE LENGTH=397;; (*ITAG) Solyc10g050750.1.1 (e_value=2e-53) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:45938670-45941292 transcript_region:SL2.40ch10:45938670..45941292- go_terms:GO:0004091 functional_description:"Pectinacetylesterase like protein (Fragment) (AHRD V1 *--- Q56WP8_ARATH); contains Interpro domain(s) IPR004963 Pectinacetylesterase "; GO:0004091 NbS00010007g0013.1 protein NbS00004351g0105.1 protein NbS00049810g0002.1 protein NbS00029384g0009.1 protein ; (*GB) gi|225425204|ref|XP_002266641.1| (e_value=7e-29) PREDICTED: uncharacterized protein LOC100250497 [Vitis vinifera];; (*ITAG) Solyc01g010000.2.1 (e_value=8e-31) genomic_reference:SL2.40ch01 gene_region:4611933-4615543 transcript_region:SL2.40ch01:4611933..4615543- go_terms:GO:0008152 functional_description:"ACT domain-containing protein (AHRD V1 **-- D7M3X3_ARALY); contains Interpro domain(s) IPR002912 Amino acid-binding ACT "; GO:0008152 NbS00029384g0010.1 protein ; (*GB) gi|54606770|dbj|BAD66793.1| (e_value=4e-18) orf496 [Beta vulgaris subsp. vulgaris];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=1e-14) DNA polymerase OS=Zea mays PE=3 SV=1; NbS00053108g0004.1 protein NbS00027047g0010.1 protein NbS00042084g0004.1 protein ; (*GB) gi|7769854|gb|AAF69532.1|AC008007_7 (e_value=1e-34) F12M16.12 [Arabidopsis thaliana];; (*TAIR) AT1G53210.1 (e_value=3e-37) | Symbols: | sodium/calcium exchanger family protein / calcium-binding EF hand family protein | chr1:19844790-19847533 FORWARD LENGTH=585;; (*ITAG) Solyc07g062700.2.1 (e_value=4e-59) genomic_reference:SL2.40ch07 gene_region:62603490-62608714 transcript_region:SL2.40ch07:62603490..62608714- go_terms:GO:0016021,GO:0005509 functional_description:"Sodium/calcium exchanger family protein (AHRD V1 ***- D7KKF3_ARALY); contains Interpro domain(s) IPR004837 Sodium/calcium exchanger membrane region "; GO:0016021,GO:0005509 NbS00021689g0001.1 protein ; (*GB) gi|297745095|emb|CBI38934.3| (e_value=1e-66) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8TEQ8|PIGO_HUMAN (e_value=2e-40) GPI ethanolamine phosphate transferase 3 OS=Homo sapiens GN=PIGO PE=2 SV=3;; (*TAIR) AT5G17250.1 (e_value=6e-63) | Symbols: | Alkaline-phosphatase-like family protein | chr5:5668993-5673516 REVERSE LENGTH=925;; (*ITAG) Solyc07g014610.2.1 (e_value=3e-76) genomic_reference:SL2.40ch07 gene_region:4957498-4960704 transcript_region:SL2.40ch07:4957498..4960704- go_terms:GO:0005515,GO:0016780 functional_description:"GPI ethanolamine phosphate transferase (AHRD V1 *-** C9SPP4_VERA1); contains Interpro domain(s) IPR017850 Alkaline-phosphatase-like, core domain "; GO:0005515,GO:0016780 NbS00028935g0004.1 protein NbS00028935g0005.1 protein NbS00061916g0001.1 protein NbS00030167g0008.1 protein NbS00020043g0010.1 protein NbC26252415g0003.1 protein NbS00006333g0002.1 protein NbS00020588g0015.1 protein NbS00020588g0008.1 protein NbS00011080g0003.1 protein NbS00011080g0102.1 protein NbS00026536g0003.1 protein NbS00006577g0021.1 protein NbS00006577g0023.1 protein NbS00035982g0003.1 protein ; (*GB) gi|78191398|gb|ABB29920.1| (e_value=3e-35) CAPIP1-like [Solanum tuberosum];; (*SWP) sp|Q9FGM1|PYL8_ARATH (e_value=1e-33) Abscisic acid receptor PYL8 OS=Arabidopsis thaliana GN=PYL8 PE=1 SV=1;; (*TAIR) AT5G53160.1 (e_value=7e-36) | Symbols: RCAR3, PYL8 | regulatory components of ABA receptor 3 | chr5:21561026-21561780 FORWARD LENGTH=157;; (*ITAG) Solyc03g007310.2.1 (e_value=7e-37) genomic_reference:SL2.40ch03 gene_region:1873856-1877023 transcript_region:SL2.40ch03:1873856..1877023+ go_terms:GO:0004872,GO:0042803 functional_description:"Abscisic acid receptor PYL8 (AHRD V1 **-* PYL8_ARATH); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; GO:0004872,GO:0042803 NbS00035982g0004.1 protein NbS00035982g0005.1 protein NbS00031049g0102.1 protein NbS00031049g0207.1 protein NbS00044479g0005.1 protein NbS00044479g0007.1 protein NbS00036045g0001.1 protein NbC23459149g0002.1 protein ; (*GB) gi|19912731|dbj|BAB88648.1| (e_value=5e-24) microtubule bundling polypeptide TMBP200 [Nicotiana tabacum];; (*ITAG) Solyc02g078640.2.1 (e_value=3e-18) genomic_reference:SL2.40ch02 gene_region:37856990-37880778 transcript_region:SL2.40ch02:37856990..37880778- go_terms:GO:0008017 functional_description:"Microtubule associated protein (AHRD V1 *--* A8J2Q6_CHLRE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008017 NbS00000439g0106.1 protein NbS00030885g0004.1 protein NbS00006511g0113.1 protein NbS00006511g0117.1 protein NbS00006511g0118.1 protein NbS00006511g0107.1 protein NbS00023335g0007.1 protein NbS00013901g0011.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=9e-23) RNase H family protein [Solanum demissum]; NbC23611127g0001.1 protein ; (*GB) gi|255542820|ref|XP_002512473.1| (e_value=6e-21) WD-repeat protein, putative [Ricinus communis];; (*SWP) sp|Q84JM4|TPR3_ARATH (e_value=5e-21) Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1;; (*TAIR) AT5G27030.2 (e_value=4e-22) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1134;; (*ITAG) Solyc01g100050.2.1 (e_value=3e-22) genomic_reference:SL2.40ch01 gene_region:81910268-81921061 transcript_region:SL2.40ch01:81910268..81921061+ functional_description:"WD-40 repeat protein (AHRD V1 *--- Q8Z020_ANASP); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00010208g0012.1 protein NbS00010208g0013.1 protein ; (*GB) gi|147835475|emb|CAN66130.1| (e_value=7e-41) hypothetical protein VITISV_033611 [Vitis vinifera];; (*ITAG) Solyc09g092210.2.1 (e_value=8e-94) genomic_reference:SL2.40ch09 gene_region:66700581-66705403 transcript_region:SL2.40ch09:66700581..66705403+ functional_description:"Nuclear movement protein nudc (AHRD V1 *-*- Q17KI6_AEDAE); contains Interpro domain(s) IPR017447 CS "; NbS00010208g0004.1 protein NbS00010208g0005.1 protein ; (*GB) gi|255554563|ref|XP_002518320.1| (e_value=3e-16) ATP binding protein, putative [Ricinus communis];; (*TAIR) AT5G09620.1 (e_value=2e-14) | Symbols: | Octicosapeptide/Phox/Bem1p family protein | chr5:2983757-2985352 REVERSE LENGTH=531;; (*ITAG) Solyc01g106320.2.1 (e_value=8e-28) genomic_reference:SL2.40ch01 gene_region:86005942-86007808 transcript_region:SL2.40ch01:86005942..86007808- functional_description:"Octicosapeptide/Phox/Bem1p domain-containing protein (AHRD V1 *--- D7MPG4_ARALY); contains Interpro domain(s) IPR000270 Octicosapeptide/Phox/Bem1p "; NbS00010208g0008.1 protein NbS00028313g0003.1 protein NbS00028881g0004.1 protein NbS00018255g0003.1 protein ; (*GB) gi|224128974|ref|XP_002320469.1| (e_value=8e-37) chromatin remodeling complex subunit [Populus trichocarpa];; (*TAIR) AT1G05120.1 (e_value=9e-35) | Symbols: | Helicase protein with RING/U-box domain | chr1:1471624-1476067 REVERSE LENGTH=833;; (*ITAG) Solyc10g049740.1.1 (e_value=2e-37) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch10 gene_region:42021073-42027978 transcript_region:SL2.40ch10:42021073..42027978+ go_terms:GO:0005515 functional_description:"Chromodomain-helicase-DNA-binding protein 1-like (AHRD V1 *--* CHD1L_DANRE); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0005515 NbS00018255g0004.1 protein NbS00018255g0005.1 protein NbS00006308g0008.1 protein NbC23266469g0001.1 protein ; (*GB) gi|350537695|ref|NP_001234049.1| (e_value=1e-31) cytochrome P450-type monooxygenase 97A29 [Solanum lycopersicum];; (*SWP) sp|Q93VK5|LUT5_ARATH (e_value=2e-28) Protein LUTEIN DEFICIENT 5, chloroplastic OS=Arabidopsis thaliana GN=CYP97A3 PE=1 SV=1;; (*TAIR) AT1G31800.1 (e_value=1e-29) | Symbols: CYP97A3, LUT5 | cytochrome P450, family 97, subfamily A, polypeptide 3 | chr1:11396440-11399470 FORWARD LENGTH=595;; (*ITAG) Solyc04g051190.2.1 (e_value=3e-34) genomic_reference:SL2.40ch04 gene_region:49193942-49213054 transcript_region:SL2.40ch04:49193942..49213054- go_terms:GO:0019825,GO:0010291 functional_description:"Cytochrome P450"; GO:0019825,GO:0010291 NbS00000661g0001.1 protein NbS00023914g0004.1 protein NbS00023914g0006.1 protein NbS00008444g0008.1 protein NbS00025144g0004.1 protein NbS00018071g0011.1 protein NbS00018071g0006.1 protein NbS00029135g0007.1 protein NbS00017224g0017.1 protein NbS00017224g0025.1 protein NbS00022294g0005.1 protein NbS00030662g0108.1 protein NbC23714878g0001.1 protein ; (*GB) gi|149927124|ref|ZP_01915381.1| (e_value=2e-32) S-adenosyl-methyltransferase [Limnobacter sp. MED105];; (*SWP) sp|Q1QVF9|RSMH_CHRSD (e_value=6e-20) Ribosomal RNA small subunit methyltransferase H OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rsmH PE=3 SV=1;; (*ITAG) Solyc00g030210.1.1 (e_value=4e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:12587233-12591896 transcript_region:SL2.40ch00:12587233..12591896+ go_terms:GO:0009273,GO:0008658,GO:0008168,GO:0055114 functional_description:"Ribosomal RNA small subunit methyltransferase H (AHRD V1 *--- RSMH_RALME); contains Interpro domain(s) IPR001460 Penicillin-binding protein, transpeptidase "; GO:0009273,GO:0008658,GO:0008168,GO:0055114 NbS00018376g0003.1 protein NbS00018376g0005.1 protein NbS00018376g0006.1 protein NbS00005014g0003.1 protein NbS00030700g0002.1 protein NbC26231442g0001.1 protein ; (*GB) gi|225458876|ref|XP_002285405.1| (e_value=9e-36) PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like [Vitis vinifera];; (*SWP) sp|Q9SY55|ECA3_ARATH (e_value=4e-35) Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA3 PE=2 SV=3;; (*TAIR) AT1G10130.1 (e_value=3e-36) | Symbols: ECA3, ATECA3 | endoplasmic reticulum-type calcium-transporting ATPase 3 | chr1:3311139-3321941 FORWARD LENGTH=998;; (*ITAG) Solyc07g022780.2.1 (e_value=4e-45) genomic_reference:SL2.40ch07 gene_region:21560309-21580902 transcript_region:SL2.40ch07:21560309..21580902+ go_terms:GO:0016020 functional_description:"Calcium-transporting ATPase (AHRD V1 ***- A8NHF4_COPC7); contains Interpro domain(s) IPR001757 ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter "; GO:0016020 NbS00015003g0006.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=1e-27) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00040427g0009.1 protein NbS00025004g0001.1 protein NbS00016699g0016.1 protein NbS00016699g0009.1 protein NbS00013665g0002.1 protein NbS00013866g0005.1 protein NbS00057789g0001.1 protein NbS00058988g0001.1 protein ; (*GB) gi|2706450|emb|CAA12415.1| (e_value=2e-24) magnesium dependent soluble inorganic pyrophosphatase [Solanum tuberosum];; (*SWP) sp|O48556|IPYR_MAIZE (e_value=1e-16) Soluble inorganic pyrophosphatase OS=Zea mays GN=IPP PE=2 SV=1;; (*TAIR) AT3G53620.1 (e_value=1e-20) | Symbols: AtPPa4, PPa4 | pyrophosphorylase 4 | chr3:19881491-19883308 FORWARD LENGTH=216;; (*ITAG) Solyc09g010380.2.1 (e_value=2e-30) genomic_reference:SL2.40ch09 gene_region:3768116-3770648 transcript_region:SL2.40ch09:3768116..3770648+ go_terms:GO:0004427 functional_description:"Inorganic pyrophosphatase-like protein (AHRD V1 **** Q9LFF9_ARATH); contains Interpro domain(s) IPR008162 Inorganic pyrophosphatase "; GO:0004427 NbS00029775g0103.1 protein NbS00006872g0002.1 protein NbS00017392g0006.1 protein ; (*GB) gi|302142800|emb|CBI20095.3| (e_value=2e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G17160.1 (e_value=2e-20) | Symbols: | pfkB-like carbohydrate kinase family protein | chr1:5867678-5869215 FORWARD LENGTH=379;; (*ITAG) Solyc07g062070.2.1 (e_value=3e-31) genomic_reference:SL2.40ch07 gene_region:62119223-62123240 transcript_region:SL2.40ch07:62119223..62123240+ go_terms:GO:0005515 functional_description:"Ribokinase (AHRD V1 ***- C5RCK9_WEIPA); contains Interpro domain(s) IPR011611 Carbohydrate/purine kinase "; GO:0005515 NbS00009684g0006.1 protein ; (*GB) gi|297738875|emb|CBI28120.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|O75165|DJC13_HUMAN (e_value=3e-54) DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1 SV=5;; (*TAIR) AT2G26890.1 (e_value=6e-169) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021910.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:10196863-10226591 transcript_region:SL2.40ch08:10196863..10226591+ go_terms:GO:0051087 functional_description:"Chaperone protein dnaJ (AHRD V1 *-** DNAJ_RALEH); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0051087 NbS00009684g0007.1 protein ; (*GB) gi|225445342|ref|XP_002281542.1| (e_value=3e-54) PREDICTED: dnaJ homolog subfamily C member 13-like [Vitis vinifera];; (*TAIR) AT2G26890.1 (e_value=1e-52) | Symbols: GRV2, KAM2 | DNAJ heat shock N-terminal domain-containing protein | chr2:11462327-11473841 REVERSE LENGTH=2554;; (*ITAG) Solyc08g021890.2.1 (e_value=2e-37) genomic_reference:SL2.40ch08 gene_region:10181970-10188023 transcript_region:SL2.40ch08:10181970..10188023+ go_terms:GO:0055114 functional_description:"DnaJ homolog subfamily C member 13 (AHRD V1 **-- DJC13_HUMAN)"; GO:0055114 NbS00046941g0004.1 protein ; (*GB) gi|1710401|sp|P49730.1|RIR2_TOBAC (e_value=2e-34) RecName: Full=Ribonucleoside-diphosphate reductase small chain; AltName: Full=Ribonucleoside-diphosphate reductase R2 subunit; AltName: Full=Ribonucleotide reductase small subunit;; (*SWP) sp|P49730|RIR2_TOBAC (e_value=6e-36) Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G27060.1 (e_value=2e-27) | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide reductase-like family protein | chr3:9979971-9981057 REVERSE LENGTH=332;; (*ITAG) Solyc02g094160.1.1 (e_value=6e-38) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:49359009-49359998 transcript_region:SL2.40ch02:49359009..49359998+ go_terms:GO:0016959,GO:0042802 functional_description:"Ribonucleoside-diphosphate reductase small chain (AHRD V1 **** B6TLH5_MAIZE); contains Interpro domain(s) IPR000358 Ribonucleotide reductase "; GO:0016959,GO:0042802 NbS00039175g0009.1 protein NbS00004081g0103.1 protein NbS00027123g0007.1 protein NbS00011736g0005.1 protein NbS00013741g0003.1 protein NbS00013741g0004.1 protein NbS00003984g0007.1 protein NbS00016136g0103.1 protein NbS00023438g0004.1 protein NbS00003942g0003.1 protein ; (*GB) gi|334182298|ref|NP_001184910.1| (e_value=3e-21) HIT-type Zinc finger family protein [Arabidopsis thaliana];; (*SWP) sp|Q8GZ79|TI201_ARATH (e_value=2e-21) Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana GN=TIC20-I PE=1 SV=1;; (*TAIR) AT1G04945.3 (e_value=8e-24) | Symbols: | HIT-type Zinc finger family protein | chr1:1399588-1402651 FORWARD LENGTH=644;; (*ITAG) Solyc04g076740.2.1 (e_value=8e-25) genomic_reference:SL2.40ch04 gene_region:59228814-59231535 transcript_region:SL2.40ch04:59228814..59231535+ go_terms:GO:0016021 functional_description:"Tic20-like protein (AHRD V1 ***- Q2V9A0_SOLTU); contains Interpro domain(s) IPR005691 Chloroplast protein import component Tic20 "; GO:0016021 NbS00003942g0004.1 protein NbC24238531g0001.1 protein ; (*ITAG) Solyc01g106770.2.1 (e_value=3e-14) genomic_reference:SL2.40ch01 gene_region:86274016-86309317 transcript_region:SL2.40ch01:86274016..86309317+ go_terms:GO:0004674 functional_description:"Serine/threonine-protein kinase TEL1 (AHRD V1 *-** ATM_ASHGO); contains Interpro domain(s) IPR003151 PIK-related kinase, FAT "; GO:0004674 NbS00040978g0002.1 protein NbS00040978g0004.1 protein NbS00017751g0006.1 protein NbS00017751g0008.1 protein NbS00017751g0010.1 protein NbS00001682g0005.1 protein NbS00001682g0006.1 protein NbS00001682g0111.1 protein NbS00001682g0112.1 protein NbS00001682g0110.1 protein NbS00007073g0005.1 protein NbS00016061g0007.1 protein NbS00050570g0006.1 protein NbS00027494g0001.1 protein NbS00010263g0007.1 protein NbS00014429g0014.1 protein ; (*GB) gi|225454125|ref|XP_002269834.1| (e_value=2e-93) PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9LD43|ACCA_ARATH (e_value=4e-18) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=CAC3 PE=1 SV=1;; (*TAIR) AT2G38040.2 (e_value=3e-19) | Symbols: CAC3 | acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769;; (*ITAG) Solyc01g094340.2.1 (e_value=7e-145) genomic_reference:SL2.40ch01 gene_region:77617107-77622316 transcript_region:SL2.40ch01:77617107..77622316+ go_terms:GO:0009317,GO:0016874 functional_description:"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (AHRD V1 *-*- A0YRC5_LYNSP); contains Interpro domain(s) IPR001095 Acetyl-CoA carboxylase, alpha subunit "; GO:0009317,GO:0016874 NbS00004705g0003.1 protein NbS00008657g0006.1 protein NbS00008657g0007.1 protein NbS00040857g0005.1 protein NbS00019468g0005.1 protein NbS00001817g0011.1 protein NbS00001817g0012.1 protein NbS00001817g0014.1 protein NbS00001731g0005.1 protein NbS00001731g0006.1 protein NbS00005167g0005.1 protein NbS00005167g0112.1 protein NbS00009229g0004.1 protein NbS00003644g0002.1 protein NbS00050154g0001.1 protein NbS00057166g0005.1 protein NbS00024971g0002.1 protein NbS00044266g0004.1 protein NbS00048496g0003.1 protein NbS00032379g0005.1 protein NbS00032379g0006.1 protein NbS00041925g0001.1 protein NbS00027043g0011.1 protein NbS00027043g0013.1 protein NbS00011706g0011.1 protein NbS00011706g0014.1 protein NbS00011706g0015.1 protein NbS00011706g0016.1 protein NbS00011706g0010.1 protein NbS00030172g0003.1 protein NbS00031537g0007.1 protein NbS00052399g0003.1 protein NbS00038800g0012.1 protein NbS00044847g0002.1 protein NbS00013639g0002.1 protein NbC24506604g0001.1 protein ; (*GB) gi|225434648|ref|XP_002279568.1| (e_value=2e-64) PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit A [Vitis vinifera];; (*SWP) sp|Q64323|PIGA_MOUSE (e_value=3e-35) N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein OS=Mus musculus GN=Piga PE=2 SV=1;; (*TAIR) AT3G45100.2 (e_value=4e-62) | Symbols: SETH2 | UDP-Glycosyltransferase superfamily protein | chr3:16504648-16506858 FORWARD LENGTH=447;; (*ITAG) Solyc08g082840.1.1 (e_value=3e-67) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:62670150-62675212 transcript_region:SL2.40ch08:62670150..62675212- go_terms:GO:0005515,GO:0017176 functional_description:"Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit (AHRD V1 **** B6K805_SCHJY); contains Interpro domain(s) IPR013234 PIGA, GPI anchor biosynthesis "; GO:0005515,GO:0017176 NbS00059172g0002.1 protein NbS00030485g0008.1 protein NbS00011889g0008.1 protein NbS00008042g0004.1 protein NbS00024869g0003.1 protein NbS00024869g0006.1 protein NbS00002441g0003.1 protein NbS00001534g0002.1 protein NbS00011571g0002.1 protein NbS00002007g0116.1 protein NbS00002007g0107.1 protein NbS00031927g0003.1 protein NbS00038255g0004.1 protein NbS00017956g0014.1 protein NbS00017956g0019.1 protein NbS00004828g0003.1 protein NbS00004828g0004.1 protein ; (*GB) gi|356505463|ref|XP_003521510.1| (e_value=3e-17) PREDICTED: ribosomal RNA processing protein 36 homolog [Glycine max];; (*TAIR) AT1G12650.4 (e_value=1e-16) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORWARD LENGTH=248;; (*ITAG) Solyc06g073120.2.1 (e_value=4e-29) genomic_reference:SL2.40ch06 gene_region:41440780-41441789 transcript_region:SL2.40ch06:41440780..41441789- go_terms:GO:0005515 functional_description:"Testis intracellular mediator protein (AHRD V1 **-- B6T986_MAIZE); contains Interpro domain(s) IPR009292 Protein of unknown function DUF947 "; GO:0005515 NbS00004828g0103.1 protein NbS00004382g0008.1 protein NbS00016606g0002.1 protein NbS00010230g0005.1 protein NbS00010230g0007.1 protein ; (*GB) gi|359496944|ref|XP_002268317.2| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100261350, partial [Vitis vinifera];; (*ITAG) Solyc11g008670.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:2849753-2857214 transcript_region:SL2.40ch11:2849753..2857214+ functional_description:"At1g65470/F5I14_33 (Fragment) (AHRD V1 *-*- Q9SXY0_ARATH)"; NbS00012730g0005.1 protein ; (*GB) gi|224074253|ref|XP_002304322.1| (e_value=8e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q9M0G5|CRK43_ARATH (e_value=5e-17) Putative cysteine-rich receptor-like protein kinase 43 OS=Arabidopsis thaliana GN=CRK43 PE=2 SV=1;; (*TAIR) AT4G28670.1 (e_value=4e-18) | Symbols: | Protein kinase family protein with domain of unknown function (DUF26) | chr4:14151387-14153935 FORWARD LENGTH=625;; (*ITAG) Solyc02g067780.2.1 (e_value=6e-30) genomic_reference:SL2.40ch02 gene_region:32472866-32475403 transcript_region:SL2.40ch02:32472866..32475403+ go_terms:GO:0004702,GO:0019199 functional_description:"RLK, Receptor like protein, putative resistance protein with an antifungal domain"; GO:0004702,GO:0019199 NbS00062183g0001.1 protein NbS00062183g0003.1 protein NbS00026366g0002.1 protein NbS00027126g0004.1 protein NbS00020284g0006.1 protein NbS00020284g0007.1 protein NbS00033220g0005.1 protein NbS00008345g0007.1 protein NbC25965200g0001.1 protein ; (*GB) gi|225457586|ref|XP_002272933.1| (e_value=6e-18) PREDICTED: uncharacterized protein At5g43822 [Vitis vinifera];; (*ITAG) Solyc04g082560.2.1 (e_value=3e-20) genomic_reference:SL2.40ch04 gene_region:63788827-63804388 transcript_region:SL2.40ch04:63788827..63804388+ go_terms:GO:0005509 functional_description:"Actin cytoskeleton-regulatory complex protein PAN1 (AHRD V1 *--- PAN1_MAGGR); contains Interpro domain(s) IPR011992 EF-Hand type "; GO:0005509 NbS00006819g0006.1 protein NbS00004333g0011.1 protein NbS00007942g0005.1 protein NbS00007942g0006.1 protein NbS00007942g0007.1 protein NbC23710160g0001.1 protein ; (*GB) gi|224128195|ref|XP_002320267.1| (e_value=1e-26) predicted protein [Populus trichocarpa];; (*TAIR) AT3G62240.1 (e_value=3e-25) | Symbols: | RING/U-box superfamily protein | chr3:23033592-23036653 REVERSE LENGTH=812;; (*ITAG) Solyc01g068390.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:69990846-69996128 transcript_region:SL2.40ch01:69990846..69996128- go_terms:GO:0008270,GO:0005622 functional_description:"Zinc finger family protein (AHRD V1 ***- D7LSV3_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270,GO:0005622 NbS00009501g0003.1 protein NbS00008606g0001.1 protein NbS00007045g0009.1 protein NbS00006572g0004.1 protein NbS00006572g0005.1 protein NbS00006572g0007.1 protein NbS00016945g0008.1 protein NbS00030175g0006.1 protein ; (*GB) gi|7801660|emb|CAB91581.1| (e_value=3e-18) putative protein [Arabidopsis thaliana];; (*ITAG) Solyc04g076160.1.1 (e_value=2e-11) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:58695848-58699311 transcript_region:SL2.40ch04:58695848..58699311- functional_description:"Helitron helicase-like protein (AHRD V1 ***- D0NJ00_PHYIN)"; NbS00007487g0003.1 protein NbS00007487g0004.1 protein NbS00007159g0001.1 protein ; (*ITAG) Solyc09g083160.2.1 (e_value=2e-19) genomic_reference:SL2.40ch09 gene_region:64221655-64222331 transcript_region:SL2.40ch09:64221655..64222331- functional_description:"Unknown Protein (AHRD V1)"; NbS00041677g0006.1 protein NbS00028751g0005.1 protein NbS00028751g0006.1 protein NbS00056959g0004.1 protein NbS00058016g0005.1 protein NbS00013607g0014.1 protein NbS00013607g0009.1 protein NbS00009003g0103.1 protein NbS00048779g0001.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=3e-12) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00005340g0001.1 protein NbS00004582g0002.1 protein NbS00004582g0003.1 protein NbS00004582g0109.1 protein NbS00018073g0002.1 protein NbS00006985g0004.1 protein NbS00010394g0006.1 protein NbS00004130g0011.1 protein NbS00004130g0012.1 protein NbS00004130g0016.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00048222g0002.1 protein ; (*ITAG) Solyc04g008880.2.1 (e_value=2e-16) genomic_reference:SL2.40ch04 gene_region:2495076-2498241 transcript_region:SL2.40ch04:2495076..2498241+ go_terms:GO:0016881 functional_description:"UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (AHRD V1 **** A3DE30_CLOTH); contains Interpro domain(s) IPR005863 UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase "; GO:0016881 NbS00010737g0006.1 protein ; (*GB) gi|255573993|ref|XP_002527914.1| (e_value=6e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc05g013360.2.1 (e_value=6e-71) genomic_reference:SL2.40ch05 gene_region:6442824-6446263 transcript_region:SL2.40ch05:6442824..6446263- functional_description:"Poor homologous synapsis 1 protein (AHRD V1 ***- Q6W2J0_MAIZE)"; NbS00003668g0004.1 protein NbS00003668g0006.1 protein NbS00013992g0003.1 protein NbS00007460g0004.1 protein NbS00005228g0003.1 protein NbS00005228g0004.1 protein NbS00016003g0002.1 protein NbS00020503g0008.1 protein NbS00020503g0009.1 protein NbS00008236g0002.1 protein NbS00008236g0005.1 protein ; (*GB) gi|297745695|emb|CBI40980.3| (e_value=3e-27) unnamed protein product [Vitis vinifera];; (*TAIR) AT3G50380.1 (e_value=1e-25) | Symbols: | Protein of unknown function (DUF1162) | chr3:18686527-18700533 REVERSE LENGTH=3072;; (*ITAG) Solyc02g090130.2.1 (e_value=8e-33) genomic_reference:SL2.40ch02 gene_region:46324322-46350297 transcript_region:SL2.40ch02:46324322..46350297- go_terms:GO:0008104 functional_description:"Vacuolar protein sorting-associated protein vps13 (AHRD V1 *-*- C5FUC9_NANOT); contains Interpro domain(s) IPR009543 Vacuolar protein sorting-associated protein "; GO:0008104 NbC23574168g0001.1 protein ; (*GB) gi|224145131|ref|XP_002325538.1| (e_value=7e-28) predicted protein [Populus trichocarpa];; (*TAIR) AT1G22610.1 (e_value=4e-28) | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr1:7994478-7997567 FORWARD LENGTH=1029;; (*ITAG) Solyc11g022400.1.1 (e_value=1e-26) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:13735532-13738501 transcript_region:SL2.40ch11:13735532..13738501- functional_description:"Phosphoribosylanthranilate transferase (Fragment) (AHRD V1 *--- Q43085_PEA); contains Interpro domain(s) IPR013583 Phosphoribosyltransferase C-terminal, plant "; NbS00005123g0001.1 protein NbS00025705g0002.1 protein NbS00014267g0008.1 protein NbS00051725g0003.1 protein NbS00051725g0006.1 protein NbS00039066g0006.1 protein ; (*GB) gi|4056456|gb|AAC98029.1| (e_value=3e-20) Strong similarity to gb|U20808 auxin-induced protein from Vigna radiata and a member of the zinc-binding dehydrogenase family PF|00107. ESTs gb|T43674, gb|H77006 and gb|AA395179 come from this gene [Arabidopsis thaliana];; (*SWP) sp|Q9ZUC1|QORL_ARATH (e_value=2e-21) Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2;; (*TAIR) AT1G23740.1 (e_value=1e-22) | Symbols: | Oxidoreductase, zinc-binding dehydrogenase family protein | chr1:8398245-8399656 REVERSE LENGTH=386;; (*ITAG) Solyc05g005480.2.1 (e_value=3e-25) genomic_reference:SL2.40ch05 gene_region:352211-355615 transcript_region:SL2.40ch05:352211..355615+ go_terms:GO:0004024 functional_description:"Oxidoreductase zinc-binding dehydrogenase (AHRD V1 **** C2RQQ3_BACCE); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0004024 NbS00045599g0004.1 protein NbS00009363g0005.1 protein NbS00011712g0001.1 protein ; (*GB) gi|255550884|ref|XP_002516490.1| (e_value=2e-16) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT5G11700.1 (e_value=2e-17) | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1419;; (*ITAG) Solyc08g065980.2.1 (e_value=1e-22) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00050901g0013.1 protein NbS00030837g0002.1 protein NbS00038545g0001.1 protein ; (*ITAG) Solyc08g067980.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:54257816-54260443 transcript_region:SL2.40ch08:54257816..54260443+ functional_description:"Unknown Protein (AHRD V1)"; NbS00000418g0112.1 protein NbS00000418g0114.1 protein NbS00007176g0004.1 protein NbS00007176g0006.1 protein NbS00001709g0006.1 protein NbS00042707g0003.1 protein NbS00019947g0006.1 protein NbS00040594g0011.1 protein NbS00040594g0006.1 protein ; (*GB) gi|224098513|ref|XP_002311201.1| (e_value=5e-90) predicted protein [Populus trichocarpa];; (*TAIR) AT4G32870.1 (e_value=1e-16) | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr4:15862168-15862641 FORWARD LENGTH=157;; (*ITAG) Solyc08g066420.1.1 (e_value=1e-13) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch08 gene_region:52265221-52265730 transcript_region:SL2.40ch08:52265221..52265730+ functional_description:"Lachrymatory-factor synthase (AHRD V1 ***- B6UBY7_MAIZE); contains Interpro domain(s) IPR019587 Polyketide cyclase/dehydrase "; NbS00040594g0009.1 protein NbS00011323g0003.1 protein ; (*GB) gi|117622284|gb|ABK51386.1| (e_value=8e-48) apyrase-like protein [Nicotiana tabacum];; (*SWP) sp|P80595|APY_SOLTU (e_value=2e-28) Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2;; (*TAIR) AT3G04080.1 (e_value=1e-32) | Symbols: ATAPY1, APY1 | apyrase 1 | chr3:1068068-1070917 REVERSE LENGTH=471;; (*ITAG) Solyc12g096560.1.1 (e_value=2e-43) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63765079-63769466 transcript_region:SL2.40ch12:63765079..63769466+ go_terms:GO:0016787 functional_description:"Ectonucleoside triphosphate diphosphohydrolase 6 (AHRD V1 **-- Q6YHK4_CAVPO); contains Interpro domain(s) IPR000407 Nucleoside phosphatase GDA1/CD39 "; GO:0016787 NbS00011323g0005.1 protein NbS00018421g0001.1 protein NbS00030604g0004.1 protein NbS00026681g0002.1 protein NbS00006413g0002.1 protein ; (*GB) gi|147856032|emb|CAN78615.1| (e_value=9e-24) hypothetical protein VITISV_003657 [Vitis vinifera];; (*ITAG) Solyc08g021980.1.1 (e_value=8e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:10411100-10412293 transcript_region:SL2.40ch08:10411100..10412293- go_terms:GO:0005622 functional_description:"HAT family dimerisation domain containing protein (AHRD V1 ***- Q2QP95_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0005622 NbS00001565g0003.1 protein ; (*GB) gi|224135945|ref|XP_002322200.1| (e_value=6e-33) predicted protein [Populus trichocarpa];; (*TAIR) AT4G24700.1 (e_value=4e-12) | Symbols: | unknown protein; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:12744807-12745238 REVERSE LENGTH=143;; (*ITAG) Solyc03g112190.2.1 (e_value=6e-34) genomic_reference:SL2.40ch03 gene_region:56731966-56738555 transcript_region:SL2.40ch03:56731966..56738555+ functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7LRK9_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; NbS00007579g0001.1 protein ; (*GB) gi|147810722|emb|CAN71797.1| (e_value=3e-72) hypothetical protein VITISV_026278 [Vitis vinifera];; (*TAIR) AT2G29050.2 (e_value=8e-61) | Symbols: ATRBL1, RBL1 | RHOMBOID-like 1 | chr2:12478245-12479653 FORWARD LENGTH=346;; (*ITAG) Solyc09g010880.2.1 (e_value=2e-94) genomic_reference:SL2.40ch09 gene_region:4210208-4220467 transcript_region:SL2.40ch09:4210208..4220467- go_terms:GO:0016021 functional_description:"Rhomboid family protein (AHRD V1 ***- D7LUM3_ARALY); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid "; GO:0016021 NbS00005441g0004.1 protein NbS00005441g0006.1 protein NbS00005441g0209.1 protein NbS00051235g0003.1 protein NbS00051235g0005.1 protein NbS00023351g0003.1 protein NbS00023351g0005.1 protein NbS00023351g0006.1 protein NbS00017200g0005.1 protein NbS00026409g0006.1 protein ; (*GB) gi|224142779|ref|XP_002324728.1| (e_value=6e-40) predicted protein [Populus trichocarpa];; (*TAIR) AT1G19170.1 (e_value=4e-39) | Symbols: | Pectin lyase-like superfamily protein | chr1:6616777-6618875 FORWARD LENGTH=506;; (*ITAG) Solyc03g117750.2.1 (e_value=2e-51) genomic_reference:SL2.40ch03 gene_region:60842903-60847365 transcript_region:SL2.40ch03:60842903..60847365- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00026409g0007.1 protein NbS00026409g0010.1 protein NbS00031375g0003.1 protein NbS00025462g0003.1 protein NbS00025462g0004.1 protein NbS00054019g0001.1 protein ; (*ITAG) Solyc01g108910.2.1 (e_value=6e-28) genomic_reference:SL2.40ch01 gene_region:87797493-87799653 transcript_region:SL2.40ch01:87797493..87799653- functional_description:"COSII_At2g15890 (Fragment) (AHRD V1 *-*- C0KFD9_9SOLN)"; NbS00005496g0003.1 protein NbC24201415g0001.1 protein ; (*GB) gi|356541123|ref|XP_003539032.1| (e_value=3e-29) PREDICTED: serine/threonine-protein kinase SMG1 [Glycine max];; (*ITAG) Solyc01g109080.2.1 (e_value=2e-41) genomic_reference:SL2.40ch01 gene_region:87877828-87898853 transcript_region:SL2.40ch01:87877828..87898853+ go_terms:GO:0005488,GO:0016773 functional_description:"Protein kinase (AHRD V1 *-*- D3AX52_POLPA); contains Interpro domain(s) IPR000403 Phosphatidylinositol 3- and 4-kinase, catalytic "; GO:0005488,GO:0016773 NbC24390909g0002.1 protein ; (*GB) gi|359480611|ref|XP_003632499.1| (e_value=1e-37) PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera];; (*TAIR) AT3G49880.1 (e_value=7e-40) | Symbols: | glycosyl hydrolase family protein 43 | chr3:18496907-18498398 FORWARD LENGTH=466;; (*ITAG) Solyc01g109050.2.1 (e_value=6e-43) genomic_reference:SL2.40ch01 gene_region:87871260-87872982 transcript_region:SL2.40ch01:87871260..87872982- go_terms:GO:0005975 functional_description:"Beta-glucanase-like protein (AHRD V1 **-- Q5N9F8_ORYSJ); contains Interpro domain(s) IPR006710 Glycoside hydrolase, family 43 "; GO:0005975 NbS00025117g0011.1 protein ; (*GB) gi|297743665|emb|CBI36548.3| (e_value=2e-40) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q03387|IF41_WHEAT (e_value=2e-35) Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2;; (*TAIR) AT2G24050.1 (e_value=2e-34) | Symbols: eIFiso4G2 | MIF4G domain-containing protein / MA3 domain-containing protein | chr2:10225500-10228456 REVERSE LENGTH=747;; (*ITAG) Solyc12g009960.1.1 (e_value=1e-45) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:3111232-3118201 transcript_region:SL2.40ch12:3111232..3118201+ go_terms:GO:0016070,GO:0005488 functional_description:"Eukaryotic translation initiation factor 4 (AHRD V1 *-*- D8TN78_VOLCA); contains Interpro domain(s) IPR016021 MIF4-like, type 1/2/3 "; GO:0016070,GO:0005488 NbS00018572g0007.1 protein NbS00004742g0008.1 protein NbS00004742g0010.1 protein NbS00032206g0004.1 protein NbS00031697g0005.1 protein ; (*ITAG) Solyc01g056950.1.1 (e_value=7e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:50542995-50543679 transcript_region:SL2.40ch01:50542995..50543679- functional_description:"Orf141 protein (AHRD V1 *-*- Q5U6D6_BETVU)"; NbS00039736g0004.1 protein NbS00039736g0005.1 protein NbS00024322g0004.1 protein NbS00024322g0006.1 protein ; (*GB) gi|356530758|ref|XP_003533947.1| (e_value=1e-32) PREDICTED: uncharacterized protein LOC100795068 [Glycine max];; (*SWP) sp|Q9SZN7|HIP26_ARATH (e_value=1e-20) Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1;; (*TAIR) AT1G71050.1 (e_value=2e-28) | Symbols: HIPP20 | Heavy metal transport/detoxification superfamily protein | chr1:26803322-26803946 REVERSE LENGTH=152;; (*ITAG) Solyc03g043640.2.1 (e_value=3e-37) genomic_reference:SL2.40ch03 gene_region:11084805-11087342 transcript_region:SL2.40ch03:11084805..11087342+ go_terms:GO:0030001 functional_description:"Metal ion binding protein (AHRD V1 **-- B6U811_MAIZE); contains Interpro domain(s) IPR006121 Heavy metal transport/detoxification protein "; GO:0030001 NbS00044886g0004.1 protein NbS00033315g0003.1 protein NbS00017579g0007.1 protein NbS00016045g0006.1 protein NbS00016045g0009.1 protein NbS00013408g0102.1 protein NbS00013408g0103.1 protein NbS00040439g0008.1 protein NbS00005997g0007.1 protein NbS00005997g0010.1 protein NbS00050411g0002.1 protein ; (*ITAG) Solyc01g108470.1.1 (e_value=2e-30) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:87551524-87554480 transcript_region:SL2.40ch01:87551524..87554480- go_terms:GO:0042802,GO:0004185 functional_description:"Serine carboxypeptidase 1 (AHRD V1 **** B6SW38_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0042802,GO:0004185 NbS00042833g0006.1 protein ; (*GB) gi|225449066|ref|XP_002275108.1| (e_value=2e-21) PREDICTED: patatin group A-3-like [Vitis vinifera];; (*TAIR) AT2G39220.1 (e_value=1e-21) | Symbols: PLP6, PLA IIB | PATATIN-like protein 6 | chr2:16375055-16376663 REVERSE LENGTH=499;; (*ITAG) Solyc05g056030.2.1 (e_value=8e-28) genomic_reference:SL2.40ch05 gene_region:64558571-64562771 transcript_region:SL2.40ch05:64558571..64562771+ go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00010084g0006.1 protein NbS00045642g0003.1 protein NbS00033075g0001.1 protein NbS00029532g0006.1 protein NbS00028051g0001.1 protein ; (*ITAG) Solyc11g065210.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:47642992-47649719 transcript_region:SL2.40ch11:47642992..47649719+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** B9DGE6_ARATH); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00028051g0102.1 protein NbS00013881g0014.1 protein NbS00013881g0015.1 protein NbS00004139g0002.1 protein NbS00027114g0013.1 protein NbS00027114g0014.1 protein NbS00027114g0007.1 protein NbS00027114g0010.1 protein ; (*GB) gi|93280154|gb|ABF06705.1| (e_value=3e-43) Joka8 [Nicotiana plumbaginifolia];; (*ITAG) Solyc07g005400.2.1 (e_value=2e-31) genomic_reference:SL2.40ch07 gene_region:309636-314079 transcript_region:SL2.40ch07:309636..314079+ go_terms:GO:0030528 functional_description:"Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0030528 NbS00018674g0001.1 protein ; (*GB) gi|332322101|emb|CCA65996.1| (e_value=1e-39) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*TAIR) AT2G01050.1 (e_value=7e-35) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515; NbS00018674g0003.1 protein NbS00018674g0004.1 protein NbS00018674g0005.1 protein NbS00047039g0003.1 protein NbS00047039g0006.1 protein NbS00016521g0004.1 protein NbS00054425g0003.1 protein ; (*TAIR) AT1G43730.1 (e_value=9e-12) | Symbols: | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr1:16508723-16509784 REVERSE LENGTH=320;; (*ITAG) Solyc04g054680.1.1 (e_value=5e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:52132405-52134862 transcript_region:SL2.40ch04:52132405..52134862+ go_terms:GO:0008270 functional_description:"RING finger protein B (AHRD V1 *--- RNGB_DICDI); contains Interpro domain(s) IPR001841 Zinc finger, RING-type "; GO:0008270 NbS00017356g0003.1 protein NbS00010587g0011.1 protein NbS00010587g0013.1 protein NbS00010587g0015.1 protein NbS00010587g0007.1 protein NbS00003599g0205.1 protein NbS00003599g0206.1 protein NbS00054103g0003.1 protein NbS00021390g0008.1 protein NbS00021390g0010.1 protein ; (*GB) gi|296083449|emb|CBI23407.3| (e_value=6e-30) unnamed protein product [Vitis vinifera];; (*TAIR) AT1G02080.2 (e_value=8e-29) | Symbols: | transcription regulators | chr1:373694-386682 FORWARD LENGTH=2377;; (*ITAG) Solyc01g090780.2.1 (e_value=2e-35) genomic_reference:SL2.40ch01 gene_region:76194068-76219340 transcript_region:SL2.40ch01:76194068..76219340+ go_terms:GO:0005515,GO:0017163 functional_description:"Ccr4-Not transcription complex subunit (AHRD V1 *--* C5G9N0_AJEDR); contains Interpro domain(s) IPR007196 CCR4-Not complex component, Not1 "; GO:0005515,GO:0017163 NbS00001223g0012.1 protein NbS00001223g0008.1 protein NbS00025959g0107.1 protein NbS00025959g0110.1 protein NbC26247160g0003.1 protein ; (*ITAG) Solyc11g065880.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48541347-48547527 transcript_region:SL2.40ch11:48541347..48547527- go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein 4 (AHRD V1 **-* PABP4_HUMAN); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbC26247160g0004.1 protein ; (*GB) gi|356542027|ref|XP_003539473.1| (e_value=5e-59) PREDICTED: GTPase Der-like [Glycine max];; (*SWP) sp|Q8DKI1|DER_THEEB (e_value=1e-35) GTPase Der OS=Thermosynechococcus elongatus (strain BP-1) GN=der PE=3 SV=1;; (*TAIR) AT3G12080.1 (e_value=2e-60) | Symbols: emb2738 | GTP-binding family protein | chr3:3847851-3851980 FORWARD LENGTH=663;; (*ITAG) Solyc11g065870.1.1 (e_value=8e-72) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:48525816-48539876 transcript_region:SL2.40ch11:48525816..48539876+ go_terms:GO:0005525,GO:0005622 functional_description:"GTP-binding protein engA (AHRD V1 ***- Q9LH58_ARATH); contains Interpro domain(s) IPR016484 GTP-binding, EngA "; GO:0005525,GO:0005622 NbS00000177g0005.1 protein ; (*GB) gi|31323453|gb|AAP47028.1|AF375969_1 (e_value=7e-37) knox-like homeodomain protein 1 [Solanum lycopersicum];; (*TAIR) AT1G14760.2 (e_value=3e-13) | Symbols: KNATM | KNOX Arabidopsis thaliana meinox | chr1:5084530-5085213 REVERSE LENGTH=138;; (*ITAG) Solyc06g072480.1.1 (e_value=1e-39) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch06 gene_region:41092575-41094181 transcript_region:SL2.40ch06:41092575..41094181- go_terms:GO:0005634 functional_description:"Knotted-like homeobox protein (AHRD V1 *--- Q49RB7_POPTO); contains Interpro domain(s) IPR005541 KNOX2 "; GO:0005634 NbS00030580g0001.1 protein NbS00008150g0004.1 protein ; (*ITAG) Solyc11g006960.1.1 (e_value=2e-14) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:1458731-1469368 transcript_region:SL2.40ch11:1458731..1469368- functional_description:"Genomic DNA chromosome 5 P1 clone MWD9 (AHRD V1 ***- Q9FMQ6_ARATH)"; NbS00056016g0001.1 protein NbS00015067g0006.1 protein NbS00015067g0007.1 protein NbS00044224g0004.1 protein NbS00024483g0009.1 protein ; (*GB) gi|297743976|emb|CBI36946.3| (e_value=3e-23) unnamed protein product [Vitis vinifera];; (*TAIR) AT2G47410.1 (e_value=2e-22) | Symbols: | WD40/YVTN repeat-like-containing domain;Bromodomain | chr2:19449133-19456991 FORWARD LENGTH=1520;; (*ITAG) Solyc01g079510.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:71069631-71090760 transcript_region:SL2.40ch01:71069631..71090760+ go_terms:GO:0000166 functional_description:"WD-40 repeat protein-like (AHRD V1 *--- Q9FGX4_ARATH); contains Interpro domain(s) IPR017986 WD40 repeat, region "; GO:0000166 NbS00017275g0005.1 protein NbS00007658g0009.1 protein NbS00007658g0010.1 protein NbS00031109g0001.1 protein ; (*GB) gi|297799548|ref|XP_002867658.1| (e_value=1e-27) predicted protein [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G24580.1 (e_value=4e-30) | Symbols: REN1 | Rho GTPase activation protein (RhoGAP) with PH domain | chr4:12687879-12694248 REVERSE LENGTH=933;; (*ITAG) Solyc04g076140.2.1 (e_value=2e-31) genomic_reference:SL2.40ch04 gene_region:58677085-58691097 transcript_region:SL2.40ch04:58677085..58691097+ go_terms:GO:0035091,GO:0005100 functional_description:"Rho GTPase activating protein 12 (AHRD V1 *-** B2RUJ8_MOUSE); contains Interpro domain(s) IPR000198 RhoGAP "; GO:0035091,GO:0005100 NbS00003740g0004.1 protein NbS00008884g0003.1 protein NbS00008884g0107.1 protein NbS00012545g0004.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=8e-21) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00015161g0005.1 protein ; (*ITAG) Solyc08g016280.1.1 (e_value=5e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch08 gene_region:7052445-7056982 transcript_region:SL2.40ch08:7052445..7056982+ go_terms:GO:0006508 functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00048437g0005.1 protein NbS00048437g0008.1 protein ; (*ITAG) Solyc02g068240.2.1 (e_value=1e-14) genomic_reference:SL2.40ch02 gene_region:32811139-32816106 transcript_region:SL2.40ch02:32811139..32816106- go_terms:GO:0004144 functional_description:"Diacylglycerol acyltransferase family (AHRD V1 **** D7LTV7_ARALY); contains Interpro domain(s) IPR007130 Diacylglycerol acyltransferase "; GO:0004144 NbS00036454g0004.1 protein ; (*ITAG) Solyc07g007380.2.1 (e_value=4e-16) genomic_reference:SL2.40ch07 gene_region:2112949-2118856 transcript_region:SL2.40ch07:2112949..2118856- go_terms:GO:0001948 functional_description:"Endoplasmic reticulum lectin 1 (AHRD V1 **-- ERLEC_MOUSE); contains Interpro domain(s) IPR012913 Glucosidase II beta subunit-like "; GO:0001948 NbC25225469g0001.1 protein NbS00048168g0004.1 protein NbS00002188g0013.1 protein NbS00014951g0004.1 protein NbS00014951g0005.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=5e-22) Transposon MuDR mudrA-like protein, putative [Solanum demissum]; NbS00020657g0012.1 protein ; (*GB) gi|113205399|gb|AAU90302.2| (e_value=2e-15) Ulp1 protease family, C-terminal catalytic domain containing protein [Solanum demissum];; (*ITAG) Solyc06g008150.2.1 (e_value=1e-39) genomic_reference:SL2.40ch06 gene_region:2038452-2041976 transcript_region:SL2.40ch06:2038452..2041976+ functional_description:"Ulp1 peptidase-like (AHRD V1 *-*- Q5GIS9_CUCME); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; NbS00020657g0013.1 protein NbS00049768g0005.1 protein NbS00029124g0002.1 protein ; (*GB) gi|359487087|ref|XP_002272400.2| (e_value=9e-51) PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Vitis vinifera];; (*SWP) sp|Q6NMB0|HIBC3_ARATH (e_value=2e-51) Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1;; (*TAIR) AT2G30660.1 (e_value=2e-52) | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase family protein | chr2:13058500-13061665 REVERSE LENGTH=378;; (*ITAG) Solyc01g080930.2.1 (e_value=1e-43) genomic_reference:SL2.40ch01 gene_region:72778912-72788934 transcript_region:SL2.40ch01:72778912..72788934- go_terms:GO:0008152 functional_description:"Enoyl-CoA-hydratase (AHRD V1 ***- Q9SE41_AVIMR); contains Interpro domain(s) IPR001753 Crotonase, core "; GO:0008152 NbS00038497g0003.1 protein NbS00038497g0004.1 protein NbS00012028g0001.1 protein NbS00009759g0002.1 protein NbS00001649g0016.1 protein NbS00040736g0003.1 protein NbS00040736g0004.1 protein NbS00000558g0009.1 protein NbS00017981g0002.1 protein NbC23906848g0001.1 protein ; (*GB) gi|328497225|dbj|BAK18779.1| (e_value=8e-51) berberine bridge enzyme-like protein [Nicotiana tabacum];; (*TAIR) AT1G26390.1 (e_value=1e-18) | Symbols: | FAD-binding Berberine family protein | chr1:9130164-9131756 REVERSE LENGTH=530;; (*ITAG) Solyc04g080400.1.1 (e_value=6e-32) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62181409-62183478 transcript_region:SL2.40ch04:62181409..62183478- go_terms:GO:0009055 functional_description:"FAD-binding domain-containing protein (AHRD V1 **-- D7MMH8_ARALY); contains Interpro domain(s) IPR006094 FAD linked oxidase, N-terminal "; GO:0009055 NbS00004536g0011.1 protein NbS00026877g0003.1 protein NbS00026877g0004.1 protein NbS00026877g0005.1 protein ; (*GB) gi|10048265|gb|AAG12330.1|AF249743_1 (e_value=1e-26) heterotrimeric GTP-binding protein subunit beta 1 [Nicotiana tabacum];; (*SWP) sp|P93339|GBB_NICPL (e_value=3e-28) Guanine nucleotide-binding protein subunit beta OS=Nicotiana plumbaginifolia PE=2 SV=1;; (*ITAG) Solyc01g109560.2.1 (e_value=8e-28) genomic_reference:SL2.40ch01 gene_region:88230608-88236477 transcript_region:SL2.40ch01:88230608..88236477- go_terms:GO:0003924 functional_description:"Guanine nucleotide-binding protein subunit beta (AHRD V1 ***- C1GED5_PARBD); contains Interpro domain(s) IPR016346 Guanine nucleotide-binding protein, beta subunit "; GO:0003924 NbS00002490g0004.1 protein ; (*ITAG) Solyc03g122250.2.1 (e_value=3e-13) genomic_reference:SL2.40ch03 gene_region:64185690-64190037 transcript_region:SL2.40ch03:64185690..64190037- go_terms:GO:0016021 functional_description:"Transmembrane protein (AHRD V1 **-- C0NFK1_AJECG); contains Interpro domain(s) IPR009637 Transmembrane receptor, eukaryota "; GO:0016021 NbS00002490g0007.1 protein NbC26115705g0001.1 protein NbC24079723g0001.1 protein ; (*GB) gi|356527455|ref|XP_003532326.1| (e_value=2e-20) PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max];; (*TAIR) AT1G59760.1 (e_value=4e-19) | Symbols: | RNA helicase, ATP-dependent, SK12/DOB1 protein | chr1:21984571-21990110 REVERSE LENGTH=988;; (*ITAG) Solyc01g103080.2.1 (e_value=1e-23) genomic_reference:SL2.40ch01 gene_region:83506843-83515043 transcript_region:SL2.40ch01:83506843..83515043- go_terms:GO:0005515,GO:0034459 functional_description:"ATP-dependent RNA helicase DOB1 (AHRD V1 **** B0WF10_CULQU); contains Interpro domain(s) IPR016438 RNA helicase, ATP-dependent, SK12/DOB1 "; GO:0005515,GO:0034459 NbS00029010g0004.1 protein NbS00059021g0001.1 protein NbS00020460g0006.1 protein NbS00020460g0007.1 protein NbS00020460g0008.1 protein NbS00005954g0005.1 protein NbS00019265g0003.1 protein ; (*GB) gi|388508836|gb|AFK42484.1| (e_value=9e-35) unknown [Lotus japonicus]; NbS00058006g0001.1 protein ; (*GB) gi|267124|sp|P29449.1|TRXH1_TOBAC (e_value=3e-22) RecName: Full=Thioredoxin H-type 1; Short=Trx-H1;; (*SWP) sp|P29449|TRXH1_TOBAC (e_value=8e-24) Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT3G51030.1 (e_value=4e-21) | Symbols: ATTRX1, ATTRX H1, TRX1 | thioredoxin H-type 1 | chr3:18951123-18951955 REVERSE LENGTH=114;; (*ITAG) Solyc04g080850.2.1 (e_value=2e-22) genomic_reference:SL2.40ch04 gene_region:62514114-62516376 transcript_region:SL2.40ch04:62514114..62516376- go_terms:GO:0045454 functional_description:"Thioredoxin (AHRD V1 ***- Q201Z4_9SOLN); contains Interpro domain(s) IPR015467 Thioredoxin, core "; GO:0045454 NbS00035723g0002.1 protein NbS00006386g0003.1 protein NbS00005327g0011.1 protein NbS00031500g0007.1 protein NbS00050052g0001.1 protein NbS00022016g0003.1 protein NbS00061397g0004.1 protein NbS00009203g0001.1 protein NbS00030987g0001.1 protein NbS00002361g0007.1 protein NbS00033837g0003.1 protein NbS00006049g0012.1 protein NbS00006049g0014.1 protein NbS00030807g0002.1 protein NbS00045302g0004.1 protein NbS00033779g0004.1 protein NbS00033779g0005.1 protein NbS00023243g0010.1 protein NbS00019064g0004.1 protein NbS00010223g0003.1 protein NbS00005232g0007.1 protein NbS00047233g0003.1 protein ; (*ITAG) Solyc01g014550.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch01 gene_region:14334982-14336342 transcript_region:SL2.40ch01:14334982..14336342+ go_terms:GO:0005515,GO:0004674 functional_description:"LRR receptor-like serine/threonine-protein kinase FEI 2 (AHRD V1 *-** FEI2_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0005515,GO:0004674 NbS00055433g0004.1 protein NbS00019320g0007.1 protein NbS00016171g0007.1 protein ; (*GB) gi|357478433|ref|XP_003609502.1| (e_value=1e-22) Large proline-rich protein BAT3 [Medicago truncatula];; (*TAIR) AT5G25270.1 (e_value=8e-20) | Symbols: | Ubiquitin-like superfamily protein | chr5:8757577-8762002 REVERSE LENGTH=658;; (*ITAG) Solyc06g036720.2.1 (e_value=5e-17) genomic_reference:SL2.40ch06 gene_region:23955142-23972017 transcript_region:SL2.40ch06:23955142..23972017+ functional_description:"HLA-B associated transcript 3 (Fragment) (AHRD V1 *--- Q5STC0_HUMAN); contains Interpro domain(s) IPR019956 Ubiquitin subgroup "; NbS00032371g0003.1 protein NbS00032371g0004.1 protein NbS00010055g0001.1 protein NbS00013256g0011.1 protein NbS00005808g0002.1 protein ; (*GB) gi|255586132|ref|XP_002533728.1| (e_value=3e-14) amino acid transporter, putative [Ricinus communis];; (*SWP) sp|Q9FF99|AAP7_ARATH (e_value=3e-14) Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1;; (*TAIR) AT5G23810.1 (e_value=2e-15) | Symbols: AAP7 | amino acid permease 7 | chr5:8028461-8030730 FORWARD LENGTH=467;; (*ITAG) Solyc07g066010.2.1 (e_value=2e-20) genomic_reference:SL2.40ch07 gene_region:64776745-64779607 transcript_region:SL2.40ch07:64776745..64779607+ go_terms:GO:0015171 functional_description:"Amino acid permease (AHRD V1 **** B9N5L8_POPTR); contains Interpro domain(s) IPR013057 Amino acid transporter, transmembrane "; GO:0015171 NbS00033249g0007.1 protein NbS00004959g0001.1 protein NbS00001285g0002.1 protein NbS00001285g0006.1 protein NbS00048972g0004.1 protein NbS00024788g0007.1 protein NbS00024788g0008.1 protein ; (*GB) gi|57014019|ref|YP_173490.1| (e_value=1e-24) hypothetical protein NitaMp153 [Nicotiana tabacum];; (*ITAG) Solyc01g065790.1.1 (e_value=1e-21) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:64798094-64798411 transcript_region:SL2.40ch01:64798094..64798411+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017485g0004.1 protein ; (*GB) gi|25053813|gb|AAN71903.1| (e_value=2e-25) calcium/calmodulin protein kinase 1 [Nicotiana tabacum];; (*ITAG) Solyc11g006900.1.1 (e_value=9e-20) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch11 gene_region:1427677-1428273 transcript_region:SL2.40ch11:1427677..1428273+ functional_description:"Calcium/calmodulin protein kinase (AHRD V1 ***- Q84ZT8_TOBAC)"; NbS00020049g0005.1 protein ; (*GB) gi|147853036|emb|CAN82760.1| (e_value=2e-26) hypothetical protein VITISV_018106 [Vitis vinifera];; (*SWP) sp|O82392|THIC_ARATH (e_value=2e-27) Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana GN=THIC PE=1 SV=1;; (*TAIR) AT2G29630.3 (e_value=1e-28) | Symbols: THIC | thiaminC | chr2:12667395-12669569 FORWARD LENGTH=644;; (*ITAG) Solyc06g006080.2.1 (e_value=1e-28) genomic_reference:SL2.40ch06 gene_region:1109115-1112713 transcript_region:SL2.40ch06:1109115..1112713+ go_terms:GO:0051536,GO:0080041 functional_description:"Phosphomethylpyrimidine synthase (AHRD V1 ***- C7MPZ7_SACVD); contains Interpro domain(s) IPR002817 Thiamine biosynthesis protein ThiC "; GO:0051536,GO:0080041 NbS00018103g0002.1 protein NbS00010981g0005.1 protein NbS00016231g0002.1 protein NbS00048158g0011.1 protein NbS00048158g0006.1 protein NbC24051134g0001.1 protein ; (*GB) gi|153793260|gb|ABS50432.1| (e_value=3e-48) chilling-responsive protein [Nicotiana tabacum];; (*TAIR) AT2G44060.2 (e_value=1e-44) | Symbols: | Late embryogenesis abundant protein, group 2 | chr2:18226922-18227988 FORWARD LENGTH=325;; (*ITAG) Solyc08g015690.2.1 (e_value=4e-49) genomic_reference:SL2.40ch08 gene_region:5133715-5137445 transcript_region:SL2.40ch08:5133715..5137445- go_terms:GO:0009269 functional_description:"Late-embryogenesis abundant protein 2 (AHRD V1 **-- C6T750_SOYBN); contains Interpro domain(s) IPR013990 Water Stress and Hypersensitive response "; GO:0009269 NbS00041542g0004.1 protein ; (*GB) gi|356543500|ref|XP_003540198.1| (e_value=3e-16) PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max];; (*SWP) sp|Q9FJH6|AB1F_ARATH (e_value=1e-14) ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1;; (*TAIR) AT5G60790.1 (e_value=8e-16) | Symbols: ATGCN1, GCN1 | ABC transporter family protein | chr5:24453760-24455767 REVERSE LENGTH=595;; (*ITAG) Solyc11g069090.1.1 (e_value=3e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:50759436-50762771 transcript_region:SL2.40ch11:50759436..50762771+ go_terms:GO:0017111,GO:0016887 functional_description:"ATP-binding cassette protein (AHRD V1 ***- C0NDN3_AJECG); contains Interpro domain(s) IPR003439 ABC transporter-like "; GO:0017111,GO:0016887 NbS00029393g0105.1 protein NbS00004706g0009.1 protein NbS00028173g0006.1 protein NbS00028173g0008.1 protein NbS00046989g0002.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=1e-20) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=9e-15) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00005957g0006.1 protein NbS00005957g0009.1 protein NbS00034603g0102.1 protein NbS00002492g0003.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=8e-39) hypothetical protein [Nicotiana tabacum]; NbS00009953g0011.1 protein NbS00009953g0009.1 protein ; (*GB) gi|356532289|ref|XP_003534706.1| (e_value=4e-27) PREDICTED: uncharacterized protein LOC100798980 [Glycine max];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=1e-23) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT2G02060.1 (e_value=3e-26) | Symbols: | Homeodomain-like superfamily protein | chr2:495691-497609 FORWARD LENGTH=256;; (*ITAG) Solyc02g080860.1.1 (e_value=5e-32) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch02 gene_region:39544441-39546486 transcript_region:SL2.40ch02:39544441..39546486- go_terms:GO:0045449 functional_description:"Myb family transcription factor (AHRD V1 *--- D7LIV0_ARALY); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00002164g0002.1 protein NbS00002164g0003.1 protein NbS00021342g0003.1 protein NbS00021342g0004.1 protein NbS00012870g0006.1 protein NbS00012870g0007.1 protein NbS00024109g0007.1 protein NbS00030878g0003.1 protein NbS00054059g0002.1 protein NbS00006619g0009.1 protein NbS00030311g0003.1 protein ; (*GB) gi|388513737|gb|AFK44930.1| (e_value=2e-15) unknown [Lotus japonicus]; NbS00019509g0006.1 protein NbS00039712g0002.1 protein NbS00009692g0012.1 protein NbS00009692g0007.1 protein NbS00009692g0008.1 protein NbS00009692g0009.1 protein ; (*ITAG) Solyc03g121730.2.1 (e_value=9e-13) genomic_reference:SL2.40ch03 gene_region:63857885-63862728 transcript_region:SL2.40ch03:63857885..63862728+ go_terms:GO:0003993 functional_description:"5&apos-nucleotidase surE (AHRD V1 *-*- Q1JYK3_DESAC); contains Interpro domain(s) IPR002828 Survival protein SurE-like phosphatase/nucleotidase "; GO:0003993 NbS00032527g0004.1 protein NbS00002171g0111.1 protein NbS00010560g0003.1 protein NbS00024518g0003.1 protein NbS00024518g0004.1 protein NbS00003987g0008.1 protein ; (*GB) gi|359485451|ref|XP_002276944.2| (e_value=2e-25) PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera];; (*SWP) sp|C0LGP4|Y3475_ARATH (e_value=2e-16) Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1;; (*TAIR) AT3G47570.1 (e_value=2e-17) | Symbols: | Leucine-rich repeat protein kinase family protein | chr3:17527611-17530748 FORWARD LENGTH=1010;; (*ITAG) Solyc02g031790.1.1 (e_value=5e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch02 gene_region:17701100-17704661 transcript_region:SL2.40ch02:17701100..17704661+ go_terms:GO:0005515,GO:0019199 functional_description:"Receptor like kinase, RLK"; GO:0005515,GO:0019199 NbS00009580g0015.1 protein ; (*GB) gi|134303282|gb|ABO70984.1| (e_value=5e-30) gibberellin 3-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=2e-14) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=1e-15) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=3e-29) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00009580g0010.1 protein ; (*GB) gi|134303282|gb|ABO70984.1| (e_value=7e-50) gibberellin 3-oxidase 2 [Nicotiana tabacum];; (*SWP) sp|Q39103|G3OX1_ARATH (e_value=2e-31) Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2;; (*TAIR) AT1G15550.1 (e_value=2e-32) | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344569-5346078 REVERSE LENGTH=358;; (*ITAG) Solyc06g066820.2.1 (e_value=4e-46) genomic_reference:SL2.40ch06 gene_region:38407328-38409938 transcript_region:SL2.40ch06:38407328..38409938+ go_terms:GO:0016491 functional_description:"Gibberellin 3-beta-hydroxylase (Fragment) (AHRD V1 ***- D9ZZW0_9FABA); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016491 NbS00013027g0010.1 protein ; (*GB) gi|356506854|ref|XP_003522190.1| (e_value=3e-42) PREDICTED: uncharacterized protein LOC100795315 [Glycine max]; NbS00019943g0007.1 protein NbS00019943g0008.1 protein NbS00050568g0003.1 protein NbS00050568g0004.1 protein ; (*GB) gi|307135946|gb|ADN33807.1| (e_value=1e-17) ty1-copia retrotransposon protein [Cucumis melo subsp. melo]; NbS00050707g0002.1 protein NbS00050707g0003.1 protein NbS00050707g0004.1 protein NbS00012294g0009.1 protein NbS00037513g0002.1 protein NbS00038707g0004.1 protein NbS00028158g0005.1 protein ; (*GB) gi|359489831|ref|XP_002276470.2| (e_value=4e-48) PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera];; (*SWP) sp|Q66GQ2|Y5162_ARATH (e_value=3e-35) Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2;; (*TAIR) AT5G41620.1 (e_value=3e-36) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648776 FORWARD LENGTH=623;; (*ITAG) Solyc01g095390.2.1 (e_value=5e-77) genomic_reference:SL2.40ch01 gene_region:78423741-78426862 transcript_region:SL2.40ch01:78423741..78426862+ functional_description:"SKIP interacting protein 7 (Fragment) (AHRD V1 *-*- B8Q893_ORYSI)"; NbS00028158g0009.1 protein NbS00022487g0005.1 protein NbS00002551g0004.1 protein NbS00035528g0001.1 protein NbS00023770g0004.1 protein NbS00023770g0007.1 protein NbS00041000g0005.1 protein NbS00023245g0008.1 protein ; (*GB) gi|224084016|ref|XP_002307198.1| (e_value=6e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT2G34750.1 (e_value=3e-11) | Symbols: | RNA polymerase I specific transcription initiation factor RRN3 protein | chr2:14660449-14663792 REVERSE LENGTH=613;; (*ITAG) Solyc02g082340.2.1 (e_value=2e-36) genomic_reference:SL2.40ch02 gene_region:40610636-40618232 transcript_region:SL2.40ch02:40610636..40618232- go_terms:GO:0003701 functional_description:"RNA polymerase I-specific transcription initiation factor RRN3 (AHRD V1 **** RRN3_MOUSE); contains Interpro domain(s) IPR007991 RNA polymerase I specific transcription initiation factor RRN3 "; GO:0003701 NbS00023245g0009.1 protein NbS00023245g0010.1 protein NbS00013199g0002.1 protein ; (*ITAG) Solyc06g043170.2.1 (e_value=1e-25) genomic_reference:SL2.40ch06 gene_region:26145427-26158030 transcript_region:SL2.40ch06:26145427..26158030- go_terms:GO:0043140 functional_description:"Actin family protein (AHRD V1 ***- C5P4B4_COCP7); contains Interpro domain(s) IPR004000 Actin/actin-like "; GO:0043140 NbS00008258g0008.1 protein NbS00009634g0003.1 protein ; (*ITAG) Solyc01g008120.2.1 (e_value=5e-16) genomic_reference:SL2.40ch01 gene_region:2245997-2262660 transcript_region:SL2.40ch01:2245997..2262660- go_terms:GO:0004402 functional_description:"Histone acetyltransferase (AHRD V1 **** B9HG17_POPTR); contains Interpro domain(s) IPR009255 Transcriptional coactivation "; GO:0004402 NbS00059622g0005.1 protein NbS00000841g0007.1 protein NbS00034782g0001.1 protein NbS00032029g0003.1 protein NbS00011311g0109.1 protein NbS00054612g0002.1 protein NbS00054612g0004.1 protein ; (*GB) gi|356549801|ref|XP_003543279.1| (e_value=3e-15) PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max];; (*SWP) sp|Q9LSQ4|GH36_ARATH (e_value=1e-15) Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1;; (*TAIR) AT5G54510.1 (e_value=9e-17) | Symbols: GH3.6, DFL1 | Auxin-responsive GH3 family protein | chr5:22131321-22133564 REVERSE LENGTH=612;; (*ITAG) Solyc07g053030.2.1 (e_value=2e-19) genomic_reference:SL2.40ch07 gene_region:58796583-58799106 transcript_region:SL2.40ch07:58796583..58799106+ go_terms:GO:0010279 functional_description:"Indole-3-acetic acid-amido synthetase GH3.8 (AHRD V1 **-* B6U4E2_MAIZE); contains Interpro domain(s) IPR004993 GH3 auxin-responsive promoter "; GO:0010279 NbS00028274g0004.1 protein NbS00001532g0004.1 protein ; (*GB) gi|359480183|ref|XP_002278072.2| (e_value=6e-25) PREDICTED: uncharacterized protein LOC100258835 [Vitis vinifera];; (*TAIR) AT3G62330.1 (e_value=1e-20) | Symbols: | Zinc knuckle (CCHC-type) family protein | chr3:23063329-23065419 REVERSE LENGTH=479;; (*ITAG) Solyc08g078610.2.1 (e_value=1e-27) genomic_reference:SL2.40ch08 gene_region:59546613-59549799 transcript_region:SL2.40ch08:59546613..59549799- go_terms:GO:0008270 functional_description:"Zinc knuckle (CCHC-type) family protein (AHRD V1 ***- D7LSW2_ARALY); contains Interpro domain(s) IPR001878 Zinc finger, CCHC-type "; GO:0008270 NbS00001532g0005.1 protein NbS00038706g0003.1 protein NbS00037074g0003.1 protein NbS00037074g0004.1 protein NbS00045612g0001.1 protein ; (*ITAG) Solyc01g068100.2.1 (e_value=3e-16) genomic_reference:SL2.40ch01 gene_region:69585884-69593053 transcript_region:SL2.40ch01:69585884..69593053- go_terms:GO:0003700 functional_description:"Squamosa promoter binding protein-like 1 (AHRD V1 *-*- Q56YT3_ARATH); contains Interpro domain(s) IPR004333 Transcription factor, SBP-box "; GO:0003700 NbS00054504g0002.1 protein NbC24218967g0002.1 protein ; (*GB) gi|255538832|ref|XP_002510481.1| (e_value=3e-55) tetratricopeptide repeat protein, tpr, putative [Ricinus communis];; (*SWP) sp|O23052|Y1515_ARATH (e_value=3e-48) Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1;; (*TAIR) AT1G05150.1 (e_value=2e-49) | Symbols: | Calcium-binding tetratricopeptide family protein | chr1:1484280-1486706 REVERSE LENGTH=808;; (*ITAG) Solyc04g081050.1.1 (e_value=2e-70) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:62693140-62695548 transcript_region:SL2.40ch04:62693140..62695548- go_terms:GO:0005488 functional_description:"TPR repeat-containing protein (AHRD V1 *-*- B2J9B9_NOSP7); contains Interpro domain(s) IPR011990 Tetratricopeptide-like helical "; GO:0005488 NbS00004075g0003.1 protein NbS00027562g0002.1 protein NbS00000888g0101.1 protein NbS00000888g0207.1 protein NbS00000888g0208.1 protein NbS00008009g0006.1 protein NbS00017084g0002.1 protein NbS00023129g0113.1 protein NbS00023129g0114.1 protein NbS00023129g0115.1 protein NbS00023129g0119.1 protein NbS00023129g0122.1 protein NbC23527433g0001.1 protein ; (*GB) gi|147844704|emb|CAN82135.1| (e_value=2e-25) hypothetical protein VITISV_002645 [Vitis vinifera];; (*SWP) sp|Q9LJP4|CSLC4_ARATH (e_value=3e-25) Xyloglucan glycosyltransferase 4 OS=Arabidopsis thaliana GN=CSLC4 PE=1 SV=1;; (*TAIR) AT3G28180.1 (e_value=2e-26) | Symbols: ATCSLC04, CSLC04, ATCSLC4, CSLC4 | Cellulose-synthase-like C4 | chr3:10506110-10509067 FORWARD LENGTH=673;; (*ITAG) Solyc02g089640.2.1 (e_value=2e-35) genomic_reference:SL2.40ch02 gene_region:45969254-45972519 transcript_region:SL2.40ch02:45969254..45972519- go_terms:GO:0016759 functional_description:"Cellulose synthase-like C1-2 glycosyltransferase family 2 protein (AHRD V1 **** D8T077_SELML)"; GO:0016759 NbS00026480g0004.1 protein NbS00047342g0003.1 protein NbS00018438g0010.1 protein NbS00016881g0006.1 protein NbS00029181g0002.1 protein NbS00000722g0005.1 protein NbS00000722g0007.1 protein NbS00028013g0002.1 protein NbS00004701g0003.1 protein ; (*ITAG) Solyc03g112810.2.1 (e_value=7e-14) genomic_reference:SL2.40ch03 gene_region:57180241-57183176 transcript_region:SL2.40ch03:57180241..57183176+ functional_description:"Unknown Protein (AHRD V1)"; NbS00004701g0004.1 protein NbS00004701g0005.1 protein NbS00006695g0004.1 protein NbS00034561g0005.1 protein NbS00031283g0004.1 protein NbS00051210g0001.1 protein NbS00026089g0001.1 protein NbS00038411g0001.1 protein ; (*GB) gi|237506885|gb|ACQ99195.1| (e_value=3e-16) betaine aldehyde dehydrogenase [Lycium barbarum];; (*SWP) sp|P17202|BADH_SPIOL (e_value=7e-14) Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1;; (*TAIR) AT3G48170.1 (e_value=3e-13) | Symbols: ALDH10A9 | aldehyde dehydrogenase 10A9 | chr3:17786290-17789918 REVERSE LENGTH=503;; (*ITAG) Solyc06g071290.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:40246444-40251568 transcript_region:SL2.40ch06:40246444..40251568- go_terms:GO:0004028 functional_description:"Betaine aldehyde dehydrogenase (AHRD V1 **** D2DEK8_LYCBA); contains Interpro domain(s) IPR015590 Aldehyde dehydrogenase "; GO:0004028 NbS00027872g0005.1 protein NbS00022774g0007.1 protein NbS00016975g0002.1 protein NbS00020605g0005.1 protein NbS00020510g0004.1 protein ; (*GB) gi|356536288|ref|XP_003536671.1| (e_value=1e-14) PREDICTED: uncharacterized protein LOC100809119 [Glycine max];; (*ITAG) Solyc05g008920.2.1 (e_value=3e-15) genomic_reference:SL2.40ch05 gene_region:3124531-3131023 transcript_region:SL2.40ch05:3124531..3131023- functional_description:"Os08g0100600 protein (Fragment) (AHRD V1 *-*- Q0J8P7_ORYSJ); contains Interpro domain(s) IPR008507 Protein of unknown function DUF789 "; NbS00004568g0002.1 protein NbS00003788g0005.1 protein NbS00003788g0006.1 protein NbS00046086g0007.1 protein NbS00048433g0002.1 protein NbS00001921g0004.1 protein NbS00001921g0008.1 protein NbS00016542g0002.1 protein ; (*GB) gi|587562|emb|CAA56520.1| (e_value=2e-24) mitochondrial processing peptidase [Solanum tuberosum];; (*SWP) sp|P29677|MPPA_SOLTU (e_value=8e-24) Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1;; (*TAIR) AT1G51980.1 (e_value=6e-16) | Symbols: | Insulinase (Peptidase family M16) protein | chr1:19323692-19326771 REVERSE LENGTH=503;; (*ITAG) Solyc12g008630.1.1 (e_value=1e-25) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:2007849-2015328 transcript_region:SL2.40ch12:2007849..2015328- go_terms:GO:0006508,GO:0046872 functional_description:"Mitochondrial processing peptidase alpha subunit (AHRD V1 ***- Q948V5_MORAL); contains Interpro domain(s) IPR011237 Peptidase M16, core "; GO:0006508,GO:0046872 NbS00016542g0003.1 protein NbS00011555g0003.1 protein NbS00011555g0005.1 protein NbS00001433g0005.1 protein NbS00001433g0006.1 protein ; (*GB) gi|47824950|gb|AAT38724.1| (e_value=6e-16) Putative retrotransposon protein, identical [Solanum demissum]; NbC24273508g0002.1 protein ; (*ITAG) Solyc01g090850.2.1 (e_value=2e-45) genomic_reference:SL2.40ch01 gene_region:76318364-76327292 transcript_region:SL2.40ch01:76318364..76327292+ go_terms:GO:0008270,GO:0005622 functional_description:"Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003604 Zinc finger, U1-type "; GO:0008270,GO:0005622 NbS00009471g0002.1 protein NbS00034681g0001.1 protein ; (*ITAG) Solyc04g050550.1.1 (e_value=4e-19) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch04 gene_region:46729391-46731157 transcript_region:SL2.40ch04:46729391..46731157+ go_terms:GO:0003723,GO:0008270 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MJV3_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0003723,GO:0008270 NbS00042521g0004.1 protein ; (*GB) gi|357483857|ref|XP_003612215.1| (e_value=5e-31) Vacuolar protein sorting [Medicago truncatula];; (*SWP) sp|Q7X659|VP35A_ARATH (e_value=1e-28) Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1;; (*TAIR) AT2G17790.1 (e_value=9e-30) | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733685-7739344 FORWARD LENGTH=787;; (*ITAG) Solyc02g083560.2.1 (e_value=6e-36) genomic_reference:SL2.40ch02 gene_region:41498304-41507470 transcript_region:SL2.40ch02:41498304..41507470+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00042521g0006.1 protein ; (*GB) gi|255580677|ref|XP_002531161.1| (e_value=3e-19) vacuolar sorting protein, putative [Ricinus communis];; (*SWP) sp|Q7X659|VP35A_ARATH (e_value=3e-19) Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1;; (*TAIR) AT2G17790.1 (e_value=2e-20) | Symbols: VPS35A, ZIP3 | VPS35 homolog A | chr2:7733685-7739344 FORWARD LENGTH=787;; (*ITAG) Solyc03g033400.2.1 (e_value=1e-21) genomic_reference:SL2.40ch03 gene_region:9246433-9256147 transcript_region:SL2.40ch03:9246433..9256147+ go_terms:GO:0042802 functional_description:"Vacuolar protein sorting 35 (AHRD V1 ***- B6U2K5_MAIZE); contains Interpro domain(s) IPR005378 Vacuolar protein sorting-associated protein 35 "; GO:0042802 NbS00006044g0004.1 protein NbS00006044g0009.1 protein ; (*ITAG) Solyc07g006200.2.1 (e_value=2e-14) genomic_reference:SL2.40ch07 gene_region:1027967-1032985 transcript_region:SL2.40ch07:1027967..1032985- go_terms:GO:0005515 functional_description:"HD domain containing protein (AHRD V1 ***- B6TWI3_MAIZE); contains Interpro domain(s) IPR006674 Metal-dependent phosphohydrolase, HD region, subdomain "; GO:0005515 NbS00007820g0004.1 protein ; (*ITAG) Solyc12g088370.1.1 (e_value=2e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62221196-62225965 transcript_region:SL2.40ch12:62221196..62225965+ go_terms:GO:0005488 functional_description:"Interferon-related developmental regulator family protein (AHRD V1 ***- B4FQN7_MAIZE); contains Interpro domain(s) IPR007701 Interferon-related developmental regulator, N-terminal "; GO:0005488 NbS00025281g0004.1 protein NbS00004978g0004.1 protein NbS00042418g0004.1 protein NbS00013843g0004.1 protein NbS00031648g0009.1 protein NbS00011665g0013.1 protein NbS00011665g0010.1 protein NbS00009902g0002.1 protein ; (*ITAG) Solyc05g014130.2.1 (e_value=7e-56) genomic_reference:SL2.40ch05 gene_region:7825077-7831106 transcript_region:SL2.40ch05:7825077..7831106- functional_description:"COP1-interacting protein 4 (AHRD V1 *--- Q9C5U5_ARATH)"; NbS00009902g0103.1 protein NbS00016959g0003.1 protein NbS00010569g0109.1 protein NbS00010569g0110.1 protein NbS00003418g0003.1 protein NbS00019738g0004.1 protein NbS00007558g0005.1 protein NbS00016675g0007.1 protein NbS00002125g0012.1 protein ; (*GB) gi|147865183|emb|CAN79831.1| (e_value=2e-21) hypothetical protein VITISV_041029 [Vitis vinifera];; (*ITAG) Solyc02g086350.2.1 (e_value=4e-51) genomic_reference:SL2.40ch02 gene_region:43598508-43600584 transcript_region:SL2.40ch02:43598508..43600584+ functional_description:"Protein PLASTID MOVEMENT IMPAIRED 2 (AHRD V1 ***- PMI2_ARATH); contains Interpro domain(s) IPR008545 Protein of unknown function DUF827, plant "; NbS00005986g0006.1 protein NbS00005986g0008.1 protein NbC25648087g0002.1 protein ; (*GB) gi|147864206|emb|CAN80947.1| (e_value=3e-101) hypothetical protein VITISV_023986 [Vitis vinifera];; (*SWP) sp|Q23892|GLUA_DICDI (e_value=1e-23) Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2;; (*TAIR) AT5G04885.1 (e_value=1e-89) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc11g071650.1.1 (e_value=8e-101) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:52146575-52151986 transcript_region:SL2.40ch11:52146575..52151986+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00022183g0005.1 protein ; (*GB) gi|359475989|ref|XP_002280362.2| (e_value=1e-23) PREDICTED: uncharacterized protein LOC100256089 [Vitis vinifera];; (*TAIR) AT2G45700.1 (e_value=1e-20) | Symbols: | sterile alpha motif (SAM) domain-containing protein | chr2:18827216-18830505 REVERSE LENGTH=723;; (*ITAG) Solyc08g067250.2.1 (e_value=3e-26) genomic_reference:SL2.40ch08 gene_region:53497454-53507180 transcript_region:SL2.40ch08:53497454..53507180+ functional_description:"DNA cross-link repair 1A protein (AHRD V1 *-*- B0XKM0_CULQU); contains Interpro domain(s) IPR011084 DNA repair metallo-beta-lactamase "; NbS00022183g0007.1 protein NbS00022183g0008.1 protein NbS00022183g0009.1 protein NbS00031342g0102.1 protein NbS00009051g0004.1 protein NbS00009051g0006.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=1e-18) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=6e-30) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00009051g0103.1 protein NbS00013442g0003.1 protein NbS00013442g0004.1 protein NbS00031665g0005.1 protein NbS00031665g0006.1 protein ; (*GB) gi|147775207|emb|CAN70358.1| (e_value=1e-63) hypothetical protein VITISV_044308 [Vitis vinifera];; (*SWP) sp|Q949Z1|PGLR4_ARATH (e_value=4e-57) Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1;; (*TAIR) AT1G48100.1 (e_value=3e-58) | Symbols: | Pectin lyase-like superfamily protein | chr1:17766921-17769625 FORWARD LENGTH=475;; (*ITAG) Solyc04g008230.2.1 (e_value=1e-67) genomic_reference:SL2.40ch04 gene_region:1901661-1904764 transcript_region:SL2.40ch04:1901661..1904764- go_terms:GO:0005975 functional_description:"Polygalacturonase (AHRD V1 ***- B6TYD6_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold "; GO:0005975 NbS00022515g0002.1 protein NbS00022515g0003.1 protein ; (*GB) gi|297743771|emb|CBI36654.3| (e_value=8e-15) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4IAE9|Y1591_ARATH (e_value=2e-12) ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana GN=At1g05910 PE=2 SV=1;; (*TAIR) AT1G05910.1 (e_value=1e-13) | Symbols: | cell division cycle protein 48-related / CDC48-related | chr1:1790796-1796503 FORWARD LENGTH=1210;; (*ITAG) Solyc04g076180.2.1 (e_value=2e-20) genomic_reference:SL2.40ch04 gene_region:58710783-58718831 transcript_region:SL2.40ch04:58710783..58718831+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 7 homolog A (AHRD V1 *--- PRS7A_ARATH); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00031108g0008.1 protein NbS00048013g0003.1 protein NbS00026735g0005.1 protein NbS00011257g0003.1 protein NbS00033586g0002.1 protein ; (*GB) gi|359477095|ref|XP_003631937.1| (e_value=5e-14) PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera];; (*TAIR) AT3G17205.2 (e_value=2e-13) | Symbols: UPL6 | ubiquitin protein ligase 6 | chr3:5873528-5881132 FORWARD LENGTH=1015;; (*ITAG) Solyc01g057900.2.1 (e_value=2e-30) genomic_reference:SL2.40ch01 gene_region:57041756-57078903 transcript_region:SL2.40ch01:57041756..57078903- go_terms:GO:0004842 functional_description:"Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT "; GO:0004842 NbS00033130g0004.1 protein ; (*ITAG) Solyc00g027130.1.1 (e_value=5e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch00 gene_region:12388678-12390122 transcript_region:SL2.40ch00:12388678..12390122- go_terms:GO:0006508 functional_description:"Sentrin-specific protease 2 (AHRD V1 *-*- SENP2_HUMAN); contains Interpro domain(s) IPR003653 Peptidase C48, SUMO/Sentrin/Ubl1 "; GO:0006508 NbS00033130g0005.1 protein NbS00017995g0001.1 protein NbS00017995g0104.1 protein NbS00016133g0003.1 protein NbS00046238g0002.1 protein NbS00014508g0005.1 protein ; (*GB) gi|124359278|gb|ABN05779.1| (e_value=1e-32) HEAT [Medicago truncatula];; (*SWP) sp|O74476|IMB3_SCHPO (e_value=9e-20) Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=2 SV=1;; (*TAIR) AT5G19820.1 (e_value=1e-32) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=3e-32) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00024287g0005.1 protein NbS00024287g0007.1 protein NbS00042193g0002.1 protein NbC24017063g0002.1 protein ; (*GB) gi|147866311|emb|CAN79862.1| (e_value=3e-50) hypothetical protein VITISV_021998 [Vitis vinifera];; (*SWP) sp|P93484|VSR1_PEA (e_value=8e-50) Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1;; (*TAIR) AT2G14740.2 (e_value=7e-50) | Symbols: ATVSR3, VSR3, VSR2;2, BP80-2;2 | vaculolar sorting receptor 3 | chr2:6308895-6312303 FORWARD LENGTH=628;; (*ITAG) Solyc01g107130.2.1 (e_value=1e-55) genomic_reference:SL2.40ch01 gene_region:86507024-86513290 transcript_region:SL2.40ch01:86507024..86513290+ go_terms:GO:0005509 functional_description:"Vacuolar sorting receptor (AHRD V1 ***- Q93X09_VIGMU); contains Interpro domain(s) IPR003137 Protease-associated PA "; GO:0005509 NbS00002904g0002.1 protein NbS00006890g0114.1 protein NbS00006890g0115.1 protein NbS00006890g0124.1 protein NbS00012473g0002.1 protein ; (*GB) gi|297828980|ref|XP_002882372.1| (e_value=1e-25) hypothetical protein ARALYDRAFT_477743 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G04740.1 (e_value=1e-26) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=2e-34) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbS00052588g0006.1 protein NbS00005449g0002.1 protein NbS00005449g0004.1 protein NbS00022880g0003.1 protein NbS00005917g0006.1 protein NbS00019729g0005.1 protein NbS00019729g0008.1 protein NbS00019729g0009.1 protein NbS00053771g0001.1 protein NbS00053771g0002.1 protein ; (*GB) gi|224117156|ref|XP_002317493.1| (e_value=4e-15) predicted protein [Populus trichocarpa];; (*ITAG) Solyc12g013890.1.1 (e_value=4e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:4682111-4693552 transcript_region:SL2.40ch12:4682111..4693552+ functional_description:"Genomic DNA chromosome 5 TAC clone K19P17 (AHRD V1 ***- Q9FN40_ARATH)"; NbS00053771g0003.1 protein NbS00042646g0001.1 protein ; (*GB) gi|255552951|ref|XP_002517518.1| (e_value=7e-14) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT1G80440.1 (e_value=3e-13) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:30241763-30242827 FORWARD LENGTH=354;; (*ITAG) Solyc06g066770.1.1 (e_value=1e-23) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch06 gene_region:38339332-38340435 transcript_region:SL2.40ch06:38339332..38340435- functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 ***- D7KDI0_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00017227g0002.1 protein NbS00006849g0002.1 protein NbS00011771g0008.1 protein ; (*GB) gi|224060979|ref|XP_002300305.1| (e_value=3e-18) predicted protein [Populus trichocarpa]; NbS00011771g0009.1 protein NbS00029339g0003.1 protein NbS00006411g0004.1 protein ; (*GB) gi|356555871|ref|XP_003546253.1| (e_value=4e-32) PREDICTED: lysosomal beta glucosidase-like [Glycine max];; (*TAIR) AT5G04885.1 (e_value=3e-32) | Symbols: | Glycosyl hydrolase family protein | chr5:1423369-1426628 FORWARD LENGTH=665;; (*ITAG) Solyc01g097000.2.1 (e_value=2e-39) genomic_reference:SL2.40ch01 gene_region:79740438-79746490 transcript_region:SL2.40ch01:79740438..79746490+ go_terms:GO:0005975 functional_description:"Beta-D-glucosidase (AHRD V1 ***- Q7XAS3_GOSHI); contains Interpro domain(s) IPR001764 Glycoside hydrolase, family 3, N-terminal "; GO:0005975 NbS00056804g0004.1 protein NbS00027333g0002.1 protein ; (*GB) gi|15240428|ref|NP_198053.1| (e_value=5e-31) armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana];; (*TAIR) AT5G27010.1 (e_value=1e-33) | Symbols: | ARM repeat superfamily protein | chr5:9503315-9507569 REVERSE LENGTH=863;; (*ITAG) Solyc01g007140.2.1 (e_value=3e-61) genomic_reference:SL2.40ch01 gene_region:1684084-1703242 transcript_region:SL2.40ch01:1684084..1703242+ go_terms:GO:0005488 functional_description:"Pre-rRNA-processing protein ipi1 (AHRD V1 *--- B6K6C3_SCHJY); contains Interpro domain(s) IPR016024 Armadillo-type fold "; GO:0005488 NbS00022758g0004.1 protein ; (*GB) gi|357468493|ref|XP_003604531.1| (e_value=3e-28) hypothetical protein MTR_4g014190 [Medicago truncatula];; (*TAIR) AT2G01050.1 (e_value=5e-14) | Symbols: | zinc ion binding;nucleic acid binding | chr2:68337-69884 REVERSE LENGTH=515;; (*ITAG) Solyc05g021350.1.1 (e_value=2e-20) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:26848429-26849359 transcript_region:SL2.40ch05:26848429..26849359+ functional_description:"Endonuclease/exonuclease/phosphatase (AHRD V1 *--- A2Q500_MEDTR)"; NbS00023163g0005.1 protein NbS00017419g0004.1 protein NbC26326941g0001.1 protein NbS00000506g0104.1 protein NbS00020358g0004.1 protein ; (*GB) gi|356538724|ref|XP_003537851.1| (e_value=3e-15) PREDICTED: uncharacterized protein LOC100780424 [Glycine max];; (*TAIR) AT2G21380.1 (e_value=7e-14) | Symbols: | Kinesin motor family protein | chr2:9141833-9148883 FORWARD LENGTH=1058;; (*ITAG) Solyc11g044880.1.1 (e_value=5e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:36299654-36312937 transcript_region:SL2.40ch11:36299654..36312937+ go_terms:GO:0008270,GO:0007018 functional_description:"Kinesin like protein (AHRD V1 ***- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008270,GO:0007018 NbS00005040g0004.1 protein NbS00057914g0005.1 protein NbS00001289g0014.1 protein ; (*GB) gi|255537825|ref|XP_002509979.1| (e_value=6e-21) calcineurin B, putative [Ricinus communis];; (*SWP) sp|Q3HRP1|CNBL6_ORYSJ (e_value=4e-20) Calcineurin B-like protein 6 OS=Oryza sativa subsp. japonica GN=CBL6 PE=2 SV=1;; (*TAIR) AT5G24270.2 (e_value=2e-19) | Symbols: SOS3 | Calcium-binding EF-hand family protein | chr5:8238781-8240179 REVERSE LENGTH=222;; (*ITAG) Solyc03g083320.2.1 (e_value=4e-23) genomic_reference:SL2.40ch03 gene_region:46697415-46700140 transcript_region:SL2.40ch03:46697415..46700140+ go_terms:GO:0005509 functional_description:"Calcineurin B-like calcium binding protein (AHRD V1 **** B2ZYT8_VICFA); contains Interpro domain(s) IPR018248 EF hand "; GO:0005509 NbS00001289g0016.1 protein NbS00001289g0007.1 protein NbS00004512g0008.1 protein NbS00032133g0006.1 protein NbS00039940g0003.1 protein ; (*GB) gi|359485608|ref|XP_002268921.2| (e_value=2e-27) PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Vitis vinifera];; (*SWP) sp|Q6WAU0|PULR_MENPI (e_value=8e-20) (+)-pulegone reductase OS=Mentha piperita PE=1 SV=1;; (*TAIR) AT1G26320.1 (e_value=9e-21) | Symbols: | Zinc-binding dehydrogenase family protein | chr1:9105240-9107029 FORWARD LENGTH=351;; (*ITAG) Solyc07g045090.2.1 (e_value=3e-36) genomic_reference:SL2.40ch07 gene_region:55529949-55531720 transcript_region:SL2.40ch07:55529949..55531720+ go_terms:GO:0005515,GO:0032440 functional_description:"Alcohol dehydrogenase zinc-binding domain protein (AHRD V1 **-* D2QM87_SPILD); contains Interpro domain(s) IPR002085 Alcohol dehydrogenase superfamily, zinc-containing "; GO:0005515,GO:0032440 NbS00011401g0106.1 protein NbS00011401g0110.1 protein NbS00016650g0009.1 protein NbS00007463g0008.1 protein NbS00007463g0010.1 protein NbS00057983g0006.1 protein NbS00030016g0002.1 protein NbS00044080g0001.1 protein NbS00000067g0101.1 protein NbS00000067g0103.1 protein NbS00000067g0212.1 protein NbS00000067g0210.1 protein NbC26123882g0001.1 protein NbS00021706g0003.1 protein NbS00021706g0004.1 protein NbS00013238g0111.1 protein NbS00013238g0114.1 protein NbS00013238g0116.1 protein NbS00037413g0003.1 protein NbS00020645g0008.1 protein NbS00007105g0102.1 protein NbS00007105g0002.1 protein NbS00030903g0002.1 protein NbS00042806g0010.1 protein NbS00023657g0011.1 protein NbS00034658g0107.1 protein NbS00002226g0004.1 protein ; (*GB) gi|356496527|ref|XP_003517118.1| (e_value=2e-28) PREDICTED: uncharacterized protein LOC100787496 [Glycine max];; (*TAIR) AT4G35470.1 (e_value=5e-27) | Symbols: PIRL4 | plant intracellular ras group-related LRR 4 | chr4:16846531-16848448 FORWARD LENGTH=549;; (*ITAG) Solyc00g007300.2.1 (e_value=8e-37) genomic_reference:SL2.40ch00 gene_region:6935594-6938269 transcript_region:SL2.40ch00:6935594..6938269- go_terms:GO:0019903 functional_description:"Lrr, resistance protein fragment"; GO:0019903 NbS00002226g0008.1 protein NbS00057808g0002.1 protein NbS00007352g0005.1 protein NbS00005482g0003.1 protein NbS00014790g0116.1 protein NbS00014790g0117.1 protein NbS00014790g0108.1 protein NbS00014790g0110.1 protein NbS00007004g0003.1 protein NbS00007004g0004.1 protein NbS00006077g0002.1 protein ; (*GB) gi|255550960|ref|XP_002516528.1| (e_value=1e-20) tryptophanyl-tRNA synthetase, putative [Ricinus communis];; (*ITAG) Solyc12g095850.1.1 (e_value=1e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63305181-63315194 transcript_region:SL2.40ch12:63305181..63315194+ go_terms:GO:0005737 functional_description:"Tryptophanyl-tRNA synthetase (AHRD V1 ***- B4AZK3_9CHRO); contains Interpro domain(s) IPR002306 Tryptophanyl-tRNA synthetase, class Ib "; GO:0005737 NbS00006077g0113.1 protein NbS00006077g0108.1 protein NbS00006077g0109.1 protein NbS00018761g0002.1 protein ; (*GB) gi|359472541|ref|XP_002274118.2| (e_value=6e-24) PREDICTED: probable inactive purple acid phosphatase 1-like [Vitis vinifera];; (*SWP) sp|Q5MAU8|PPA27_ARATH (e_value=4e-21) Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1;; (*TAIR) AT5G50400.1 (e_value=3e-22) | Symbols: ATPAP27, PAP27 | purple acid phosphatase 27 | chr5:20523575-20526231 REVERSE LENGTH=611;; (*ITAG) Solyc07g008570.2.1 (e_value=3e-29) genomic_reference:SL2.40ch07 gene_region:3522999-3529845 transcript_region:SL2.40ch07:3522999..3529845+ go_terms:GO:0004722,GO:0005515 functional_description:"Purple acid phosphatase (AHRD V1 **-* B0WRM8_CULQU); contains Interpro domain(s) IPR008963 Purple acid phosphatase-like, N-terminal "; GO:0004722,GO:0005515 NbS00033984g0002.1 protein NbS00033984g0004.1 protein ; (*ITAG) Solyc12g096250.1.1 (e_value=4e-19) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:63603328-63605335 transcript_region:SL2.40ch12:63603328..63605335- go_terms:GO:0016747 functional_description:"N-hydroxycinnamoyl/benzoyltransferase 5 (AHRD V1 **-- Q00M85_SOYBN); contains Interpro domain(s) IPR003480 Transferase "; GO:0016747 NbS00033984g0005.1 protein NbS00041918g0001.1 protein NbS00000695g0101.1 protein NbS00005494g0004.1 protein NbS00005494g0005.1 protein NbS00005494g0006.1 protein NbS00008076g0115.1 protein NbS00008076g0107.1 protein NbS00001181g0010.1 protein ; (*ITAG) Solyc02g067690.2.1 (e_value=2e-17) genomic_reference:SL2.40ch02 gene_region:32395157-32396864 transcript_region:SL2.40ch02:32395157..32396864- go_terms:GO:0080044 functional_description:"Glucosyltransferase-like protein (AHRD V1 **** Q9LEQ4_ARATH); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080044 NbS00048569g0004.1 protein NbS00037674g0011.1 protein NbS00037674g0008.1 protein NbS00012508g0003.1 protein NbS00012508g0004.1 protein NbS00034172g0004.1 protein NbS00006249g0009.1 protein ; (*ITAG) Solyc08g075840.2.1 (e_value=1e-20) genomic_reference:SL2.40ch08 gene_region:57089376-57093498 transcript_region:SL2.40ch08:57089376..57093498+ go_terms:GO:0003697 functional_description:"Single-stranded DNA-binding replication protein A large subunit (AHRD V1 *-** D2V0Z2_NAEGR); contains Interpro domain(s) IPR004591 Replication factor-a protein 1 Rpa1 "; GO:0003697 NbS00032722g0002.1 protein NbS00032722g0003.1 protein NbS00017666g0005.1 protein ; (*GB) gi|255577841|ref|XP_002529794.1| (e_value=1e-14) hypothetical protein RCOM_0251410 [Ricinus communis]; NbS00017666g0006.1 protein NbS00017666g0007.1 protein NbS00033862g0001.1 protein ; (*ITAG) Solyc12g088800.1.1 (e_value=6e-18) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62471287-62476348 transcript_region:SL2.40ch12:62471287..62476348+ go_terms:GO:0006629 functional_description:"Lipase (AHRD V1 ***- Q5S8F1_RICCO); contains Interpro domain(s) IPR002921 Lipase, class 3 "; GO:0006629 NbS00006948g0011.1 protein NbS00006948g0014.1 protein NbS00006948g0015.1 protein ; (*GB) gi|147815496|emb|CAN65992.1| (e_value=4e-22) hypothetical protein VITISV_042149 [Vitis vinifera]; NbS00006948g0019.1 protein NbS00006948g0020.1 protein NbS00006948g0021.1 protein NbS00006948g0022.1 protein NbS00006948g0025.1 protein NbS00006948g0026.1 protein NbS00006948g0027.1 protein NbS00006948g0033.1 protein NbS00006948g0034.1 protein NbS00006948g0036.1 protein NbS00014763g0001.1 protein ; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=1e-20) importin beta-3, putative [Ricinus communis];; (*TAIR) AT5G19820.1 (e_value=3e-22) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=1e-22) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00015937g0006.1 protein NbS00015937g0007.1 protein ; (*GB) gi|37983622|gb|AAR06292.1| (e_value=7e-37) SAICAR synthetase [Nicotiana tabacum];; (*SWP) sp|Q07463|PUR7_VIGAC (e_value=4e-33) Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic (Fragment) OS=Vigna aconitifolia GN=PUR7 PE=2 SV=1;; (*TAIR) AT3G21110.2 (e_value=2e-33) | Symbols: PUR7, PURC | purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411;; (*ITAG) Solyc01g081300.2.1 (e_value=1e-39) genomic_reference:SL2.40ch01 gene_region:73045038-73052028 transcript_region:SL2.40ch01:73045038..73052028+ go_terms:GO:0004639 functional_description:"Phosphoribosylaminoimidazole-succinocarboxamide synthase (AHRD V1 **** Q6T7F0_TOBAC); contains Interpro domain(s) IPR001636 SAICAR synthetase "; GO:0004639 NbC26026417g0001.1 protein ; (*GB) gi|54261828|gb|AAV31178.1| (e_value=3e-13) Putative transposase, identical [Solanum tuberosum]; NbS00000381g0005.1 protein NbS00000381g0113.1 protein NbS00000381g0114.1 protein NbS00000381g0115.1 protein NbS00000381g0116.1 protein NbS00000381g0109.1 protein NbS00000381g0110.1 protein NbS00039486g0002.1 protein NbS00001672g0002.1 protein NbS00049316g0002.1 protein NbS00003933g0011.1 protein ; (*GB) gi|30013681|gb|AAP03883.1| (e_value=4e-15) Avr9/Cf-9 rapidly elicited protein 284 [Nicotiana tabacum];; (*ITAG) Solyc06g007190.2.1 (e_value=1e-12) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00003933g0006.1 protein NbS00003933g0008.1 protein NbS00003933g0009.1 protein NbS00025790g0002.1 protein NbS00037463g0001.1 protein NbS00000787g0005.1 protein NbS00029006g0006.1 protein NbS00029006g0008.1 protein NbS00029006g0010.1 protein NbS00035683g0010.1 protein ; (*GB) gi|57013960|ref|YP_173432.1| (e_value=6e-15) hypothetical protein NitaMp093 [Nicotiana tabacum];; (*SWP) sp|Q9M8D3|PUR4_ARATH (e_value=5e-13) Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g74260 PE=1 SV=3;; (*TAIR) AT1G74260.1 (e_value=4e-14) | Symbols: PUR4 | purine biosynthesis 4 | chr1:27923005-27927764 REVERSE LENGTH=1407;; (*ITAG) Solyc01g107270.2.1 (e_value=1e-15) genomic_reference:SL2.40ch01 gene_region:86633333-86638322 transcript_region:SL2.40ch01:86633333..86638322- go_terms:GO:0006189,GO:0003824 functional_description:"Phosphoribosylformylglycinamidine synthase (AHRD V1 ***- A9Y5J1_ARATH); contains Interpro domain(s) IPR010073 Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "; GO:0006189,GO:0003824 NbC23609911g0002.1 protein ; (*GB) gi|350537893|ref|NP_001233804.1| (e_value=4e-36) protein phosphatase 2A catalytic subunit [Solanum lycopersicum];; (*SWP) sp|O04951|PP2A5_ARATH (e_value=5e-37) Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Arabidopsis thaliana GN=PP2A5 PE=1 SV=1;; (*TAIR) AT1G69960.1 (e_value=4e-38) | Symbols: PP2A | serine/threonine protein phosphatase 2A | chr1:26348892-26350511 REVERSE LENGTH=307;; (*ITAG) Solyc01g011340.2.1 (e_value=8e-39) genomic_reference:SL2.40ch01 gene_region:8677842-8684080 transcript_region:SL2.40ch01:8677842..8684080+ go_terms:GO:0017018 functional_description:"Serine/threonine-protein phosphatase (AHRD V1 **** Q6VUQ5_SOLLC); contains Interpro domain(s) IPR006186 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase "; GO:0017018 NbS00007309g0012.1 protein NbS00007309g0014.1 protein NbS00007309g0018.1 protein NbS00021090g0010.1 protein NbS00001715g0011.1 protein NbS00001715g0009.1 protein NbS00002327g0003.1 protein NbS00002327g0004.1 protein NbS00017868g0001.1 protein NbS00051807g0001.1 protein ; (*ITAG) Solyc05g050780.2.1 (e_value=1e-18) genomic_reference:SL2.40ch05 gene_region:60095276-60102918 transcript_region:SL2.40ch05:60095276..60102918+ go_terms:GO:0016754 functional_description:"Serine carboxypeptidase 1 (AHRD V1 ***- B6TC80_MAIZE); contains Interpro domain(s) IPR001563 Peptidase S10, serine carboxypeptidase "; GO:0016754 NbS00024616g0001.1 protein NbS00029736g0008.1 protein ; (*GB) gi|125572421|gb|EAZ13936.1| (e_value=6e-15) hypothetical protein OsJ_03863 [Oryza sativa Japonica Group];; (*SWP) sp|Q39013|NAC2_ARATH (e_value=2e-13) NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2;; (*TAIR) AT1G65910.1 (e_value=1e-15) | Symbols: anac028, NAC028 | NAC domain containing protein 28 | chr1:24520933-24524108 REVERSE LENGTH=631;; (*ITAG) Solyc06g068580.1.1 (e_value=2e-31) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:38899104-38900356 transcript_region:SL2.40ch06:38899104..38900356+ go_terms:GO:0003700 functional_description:"NAC domain transcription factor (AHRD V1 *-** Q5DM35_WHEAT); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein "; GO:0003700 NbS00015855g0002.1 protein ; (*GB) gi|225449242|ref|XP_002280264.1| (e_value=3e-18) PREDICTED: probable L-type lectin-domain containing receptor kinase S.7-like [Vitis vinifera];; (*ITAG) Solyc09g011840.1.1 (e_value=1e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch09 gene_region:5120602-5121681 transcript_region:SL2.40ch09:5120602..5121681+ go_terms:GO:0005488 functional_description:"Receptor lectin kinase-like protein (AHRD V1 *-*- Q570D3_ARATH); contains Interpro domain(s) IPR001220 Legume lectin, beta chain "; GO:0005488 NbC23579900g0002.1 protein ; (*GB) gi|388504276|gb|AFK40204.1| (e_value=4e-24) unknown [Lotus japonicus];; (*SWP) sp|P09755|CB22_SOYBN (e_value=4e-25) Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1;; (*TAIR) AT1G29930.1 (e_value=2e-25) | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll A/B binding protein 1 | chr1:10478071-10478874 FORWARD LENGTH=267;; (*ITAG) Solyc03g005780.1.1 (e_value=5e-26) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:543035-543838 transcript_region:SL2.40ch03:543035..543838+ go_terms:GO:0016168 functional_description:"Chlorophyll a-b binding protein 3C-like (AHRD V1 **** Q2XTE0_SOLTU); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "; GO:0016168 NbS00019818g0006.1 protein NbS00010899g0110.1 protein NbS00010899g0206.1 protein NbS00010899g0209.1 protein NbS00007287g0001.1 protein NbS00016761g0005.1 protein NbS00016761g0006.1 protein NbS00016761g0008.1 protein NbS00017583g0005.1 protein ; (*GB) gi|109289903|gb|AAP45178.2| (e_value=2e-17) Zinc knuckle family protein [Solanum bulbocastanum]; NbS00017583g0006.1 protein NbS00008695g0013.1 protein NbS00008695g0014.1 protein NbS00008695g0015.1 protein ; (*ITAG) Solyc11g012150.1.1 (e_value=9e-18) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:5083236-5090295 transcript_region:SL2.40ch11:5083236..5090295- go_terms:GO:0005634,GO:0006367 functional_description:"Transcription initiation factor IIF alpha subunit (AHRD V1 ***- B6T7E5_MAIZE); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit "; GO:0005634,GO:0006367 NbS00008695g0016.1 protein NbS00008695g0009.1 protein NbS00030427g0005.1 protein NbS00011445g0005.1 protein ; (*ITAG) Solyc10g083920.1.1 (e_value=4e-16) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62948382-62954382 transcript_region:SL2.40ch10:62948382..62954382- go_terms:GO:0000159 functional_description:"Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform (AHRD V1 ***- 2A5D_RABIT); contains Interpro domain(s) IPR002554 Protein phosphatase 2A, regulatory B subunit, B56 "; GO:0000159 NbS00002072g0009.1 protein NbS00020968g0002.1 protein NbS00012353g0001.1 protein NbC23987923g0001.1 protein ; (*GB) gi|48210029|gb|AAT40540.1| (e_value=2e-34) kelch repeat-containing F-box family protein, putative [Solanum demissum];; (*SWP) sp|Q9CA63|FBK29_ARATH (e_value=2e-29) F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1;; (*TAIR) AT1G74510.1 (e_value=1e-30) | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr1:28006065-28007420 FORWARD LENGTH=451;; (*ITAG) Solyc05g007220.2.1 (e_value=7e-36) genomic_reference:SL2.40ch05 gene_region:1860323-1862631 transcript_region:SL2.40ch05:1860323..1862631+ functional_description:"Kelch repeat-containing F-box family protein (AHRD V1 *-*- D7LQA8_ARALY); contains Interpro domain(s) IPR015915 Kelch-type beta propeller "; NbS00053804g0006.1 protein NbS00036161g0002.1 protein NbS00036161g0003.1 protein NbS00002137g0105.1 protein NbS00001663g0005.1 protein ; (*GB) gi|224088812|ref|XP_002308550.1| (e_value=2e-31) predicted protein [Populus trichocarpa];; (*TAIR) AT5G57010.1 (e_value=4e-33) | Symbols: | calmodulin-binding family protein | chr5:23068207-23070203 FORWARD LENGTH=495;; (*ITAG) Solyc08g062930.1.1 (e_value=2e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:49555137-49557349 transcript_region:SL2.40ch08:49555137..49557349+ go_terms:GO:0005516 functional_description:"Calmodulin-binding protein (AHRD V1 **** A2I5F3_BETVU)"; GO:0005516 NbS00001663g0007.1 protein NbS00014821g0005.1 protein NbS00043266g0002.1 protein NbS00043266g0005.1 protein ; (*GB) gi|225437026|ref|XP_002278267.1| (e_value=2e-35) PREDICTED: pre-mRNA-splicing factor 18-like [Vitis vinifera];; (*TAIR) AT1G03140.1 (e_value=3e-20) | Symbols: | splicing factor Prp18 family protein | chr1:754471-756223 REVERSE LENGTH=420;; (*ITAG) Solyc09g065280.2.1 (e_value=1e-48) genomic_reference:SL2.40ch09 gene_region:58944289-58948110 transcript_region:SL2.40ch09:58944289..58948110+ go_terms:GO:0005515,GO:0019870 functional_description:"Pre-mRNA-splicing factor 18 (AHRD V1 ***- C1BJD5_OSMMO); contains Interpro domain(s) IPR004098 Prp18 "; GO:0005515,GO:0019870 NbS00000058g0015.1 protein NbS00000058g0006.1 protein NbS00031972g0007.1 protein NbS00022031g0005.1 protein NbS00021717g0003.1 protein NbS00014676g0007.1 protein NbS00028209g0003.1 protein ; (*GB) gi|225448150|ref|XP_002263889.1| (e_value=3e-12) PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera];; (*TAIR) AT1G58060.1 (e_value=1e-12) | Symbols: | RNA helicase family protein | chr1:21489480-21501775 REVERSE LENGTH=1459;; (*ITAG) Solyc01g103690.2.1 (e_value=5e-32) genomic_reference:SL2.40ch01 gene_region:83993320-84021968 transcript_region:SL2.40ch01:83993320..84021968- go_terms:GO:0004386,GO:0008026,GO:0005524 functional_description:"ATP-dependent RNA helicase A (AHRD V1 *-*- B0W4E8_CULQU); contains Interpro domain(s) IPR014001 DEAD-like helicase, N-terminal "; GO:0004386,GO:0008026,GO:0005524 NbS00026021g0006.1 protein NbS00032344g0003.1 protein NbS00032344g0004.1 protein NbS00032344g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=4e-13) hypothetical protein [Nicotiana tabacum]; NbS00003678g0001.1 protein NbS00000683g0006.1 protein NbS00036357g0001.1 protein NbS00032152g0001.1 protein ; (*ITAG) Solyc04g079030.2.1 (e_value=7e-23) genomic_reference:SL2.40ch04 gene_region:61220807-61226659 transcript_region:SL2.40ch04:61220807..61226659+ go_terms:GO:0008152 functional_description:"Anthocyanidin 3-O-glucosyltransferase (AHRD V1 *-*- B6TRK5_MAIZE); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0008152 NbS00010909g0008.1 protein NbS00010988g0002.1 protein NbS00010988g0003.1 protein NbS00030544g0004.1 protein ; (*GB) gi|297744466|emb|CBI37728.3| (e_value=6e-22) unnamed protein product [Vitis vinifera];; (*SWP) sp|F4JN00|CSTR4_ARATH (e_value=2e-19) CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1;; (*TAIR) AT4G35335.1 (e_value=1e-20) | Symbols: | Nucleotide-sugar transporter family protein | chr4:16807286-16810015 FORWARD LENGTH=352;; (*ITAG) Solyc11g008590.1.1 (e_value=1e-36) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:2778593-2785148 transcript_region:SL2.40ch11:2778593..2785148+ go_terms:GO:0016021 functional_description:"UDP-galactose transporter-like protein (AHRD V1 *-*- O65494_ARATH); contains Interpro domain(s) IPR007271 Nucleotide-sugar transporter "; GO:0016021 NbS00008151g0005.1 protein NbS00008151g0006.1 protein NbS00029251g0003.1 protein NbS00052508g0001.1 protein ; (*GB) gi|32470656|gb|AAP45182.1| (e_value=6e-38) Putative kinesin-like protein, identical [Solanum bulbocastanum];; (*ITAG) Solyc08g075930.2.1 (e_value=4e-21) genomic_reference:SL2.40ch08 gene_region:57173960-57176619 transcript_region:SL2.40ch08:57173960..57176619- functional_description:"Kinesin-like (AHRD V1 *-*- Q6Z9U4_ORYSJ)"; NbS00041436g0003.1 protein NbS00024767g0003.1 protein NbS00008318g0007.1 protein NbS00015220g0004.1 protein NbS00006597g0012.1 protein NbS00006597g0014.1 protein NbS00006597g0007.1 protein NbS00004794g0007.1 protein NbS00004794g0010.1 protein ; (*GB) gi|357435977|ref|XP_003588264.1| (e_value=7e-19) hypothetical protein MTR_1g005050 [Medicago truncatula]; NbS00014906g0003.1 protein ; (*GB) gi|125562415|gb|EAZ07863.1| (e_value=2e-25) hypothetical protein OsI_30125 [Oryza sativa Indica Group];; (*SWP) sp|P54873|HMCS_ARATH (e_value=3e-20) Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=1 SV=2;; (*TAIR) AT4G11820.2 (e_value=2e-21) | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase | chr4:7109124-7111901 REVERSE LENGTH=461;; (*ITAG) Solyc12g056450.1.1 (e_value=2e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47749001-47752891 transcript_region:SL2.40ch12:47749001..47752891+ go_terms:GO:0008152,GO:0008299 functional_description:"Hydroxymethylglutaryl-CoA synthase (AHRD V1 ***- A9ZMZ7_HEVBR); contains Interpro domain(s) IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic "; GO:0008152,GO:0008299 NbS00001443g0007.1 protein NbS00004871g0009.1 protein NbS00034760g0004.1 protein NbS00019521g0012.1 protein NbS00021694g0104.1 protein NbS00021694g0106.1 protein NbS00019928g0002.1 protein ; (*GB) gi|255579615|ref|XP_002530648.1| (e_value=4e-87) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=2e-24) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT4G16650.1 (e_value=2e-86) | Symbols: | O-fucosyltransferase family protein | chr4:9372727-9375910 FORWARD LENGTH=549;; (*ITAG) Solyc06g060750.2.1 (e_value=6e-99) genomic_reference:SL2.40ch06 gene_region:35166187-35177784 transcript_region:SL2.40ch06:35166187..35177784+ functional_description:"Os03g0169000 protein (Fragment) (AHRD V1 ***- Q0DUS7_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "; NbS00002896g0004.1 protein NbS00002896g0005.1 protein NbS00002896g0102.1 protein NbS00002896g0103.1 protein NbS00013074g0008.1 protein NbS00013074g0009.1 protein NbS00002957g0005.1 protein NbS00002957g0008.1 protein NbS00000946g0014.1 protein NbS00000946g0009.1 protein ; (*ITAG) Solyc08g081130.2.1 (e_value=9e-17) genomic_reference:SL2.40ch08 gene_region:61380523-61384815 transcript_region:SL2.40ch08:61380523..61384815+ functional_description:"Unknown Protein (AHRD V1)"; NbS00019470g0002.1 protein NbS00024849g0002.1 protein NbS00028522g0003.1 protein NbS00028522g0004.1 protein NbS00003660g0003.1 protein NbS00000726g0004.1 protein NbS00046764g0003.1 protein NbS00046764g0004.1 protein NbS00046764g0005.1 protein NbS00017030g0002.1 protein NbS00020045g0002.1 protein NbS00004288g0002.1 protein NbS00029709g0004.1 protein NbS00029709g0118.1 protein NbS00032560g0003.1 protein NbS00003724g0011.1 protein NbS00003724g0013.1 protein ; (*GB) gi|255577566|ref|XP_002529661.1| (e_value=5e-21) Structural maintenance of chromosome, putative [Ricinus communis];; (*TAIR) AT2G27170.2 (e_value=2e-21) | Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204;; (*ITAG) Solyc06g073780.2.1 (e_value=7e-19) genomic_reference:SL2.40ch06 gene_region:41916196-41935528 transcript_region:SL2.40ch06:41916196..41935528- go_terms:GO:0045502 functional_description:"Structural maintenance of chromosomes protein 3 (AHRD V1 **-- Q8AW91_XENLA); contains Interpro domain(s) IPR003395 RecF/RecN/SMC protein, N-terminal "; GO:0045502 NbS00003724g0015.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=2e-16) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00003724g0009.1 protein NbS00031150g0005.1 protein NbS00037689g0005.1 protein ; (*ITAG) Solyc04g009360.2.1 (e_value=3e-31) genomic_reference:SL2.40ch04 gene_region:2793909-2799625 transcript_region:SL2.40ch04:2793909..2799625- functional_description:"WD-40 repeat family protein (AHRD V1 **-- D7MUA3_ARALY); contains Interpro domain(s) IPR017986 WD40 repeat, region "; NbS00037689g0006.1 protein NbS00047492g0014.1 protein NbS00047492g0008.1 protein NbS00057580g0002.1 protein ; (*ITAG) Solyc07g015910.2.1 (e_value=2e-17) genomic_reference:SL2.40ch07 gene_region:5698053-5705955 transcript_region:SL2.40ch07:5698053..5705955+ go_terms:GO:0016020 functional_description:"MtN21 nodulin protein-like (AHRD V1 ***- B6TBZ6_MAIZE); contains Interpro domain(s) IPR000620 Protein of unknown function DUF6, transmembrane "; GO:0016020 NbS00025456g0013.1 protein ; (*GB) gi|32455724|ref|NP_862323.1| (e_value=1e-25) hypothetical protein BrnaMpl_p1 [Brassica napus];; (*SWP) sp|P10582|DPOM_MAIZE (e_value=4e-18) DNA polymerase OS=Zea mays PE=3 SV=1;; (*ITAG) Solyc03g013470.1.1 (e_value=1e-17) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch03 gene_region:5876619-5878402 transcript_region:SL2.40ch03:5876619..5878402- go_terms:GO:0006260 functional_description:"DNA polymerase (AHRD V1 *-*- Q6QZN8_DAUCA); contains Interpro domain(s) IPR004868 DNA-directed DNA polymerase, family B, mitochondria/virus "; GO:0006260 NbS00018742g0005.1 protein NbS00018742g0009.1 protein NbS00002076g0004.1 protein ; (*GB) gi|75321780|sp|Q5W274.1|PDR3_TOBAC (e_value=6e-48) RecName: Full=Pleiotropic drug resistance protein 3; AltName: Full=NtPDR3;; (*SWP) sp|Q5W274|PDR3_TOBAC (e_value=2e-49) Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1;; (*TAIR) AT3G53480.1 (e_value=1e-29) | Symbols: PIS1, PDR9, ATPDR9, ABCG37 | pleiotropic drug resistance 9 | chr3:19825366-19831644 FORWARD LENGTH=1450;; (*ITAG) Solyc01g101070.2.1 (e_value=3e-48) genomic_reference:SL2.40ch01 gene_region:82682230-82692010 transcript_region:SL2.40ch01:82682230..82692010- go_terms:GO:0042626 functional_description:"ABC transporter G family member 37 (AHRD V1 ***- AB37G_ARATH); contains Interpro domain(s) IPR013525 ABC-2 type transporter "; GO:0042626 NbS00002076g0005.1 protein NbS00006561g0106.1 protein NbS00006561g0108.1 protein NbS00001458g0002.1 protein NbS00012926g0005.1 protein ; (*GB) gi|225460897|ref|XP_002278722.1| (e_value=4e-30) PREDICTED: cell differentiation protein RCD1 homolog isoform 1 [Vitis vinifera];; (*SWP) sp|Q5PQL2|RCD1_RAT (e_value=7e-25) Cell differentiation protein RCD1 homolog OS=Rattus norvegicus GN=Rqcd1 PE=1 SV=1;; (*TAIR) AT3G20800.1 (e_value=7e-30) | Symbols: | Cell differentiation, Rcd1-like protein | chr3:7271412-7273897 REVERSE LENGTH=316;; (*ITAG) Solyc07g051810.1.1 (e_value=1e-50) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:57621207-57630245 transcript_region:SL2.40ch07:57621207..57630245- go_terms:GO:0042802 functional_description:"Cell differentiation protein rcd1 (AHRD V1 ***- Q5CJU4_CRYHO); contains Interpro domain(s) IPR007216 Cell differentiation, Rcd1-like "; GO:0042802 NbC24547728g0001.1 protein ; (*ITAG) Solyc08g081920.2.1 (e_value=5e-16) genomic_reference:SL2.40ch08 gene_region:61996591-62003980 transcript_region:SL2.40ch08:61996591..62003980+ go_terms:GO:0016020 functional_description:"Beta-1 3-galactosyltransferase 6 (AHRD V1 **-- B6UBH3_MAIZE); contains Interpro domain(s) IPR002659 Glycosyl transferase, family 31 "; GO:0016020 NbS00032069g0002.1 protein NbS00032069g0003.1 protein NbS00015006g0002.1 protein NbS00015006g0106.1 protein NbS00015006g0110.1 protein NbS00001604g0012.1 protein NbS00001604g0009.1 protein NbS00032306g0001.1 protein ; (*GB) gi|297742660|emb|CBI34809.3| (e_value=3e-62) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q5VQ09|ARK2_ORYSJ (e_value=1e-58) Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1;; (*TAIR) AT1G01950.2 (e_value=6e-59) | Symbols: ARK2 | armadillo repeat kinesin 2 | chr1:325473-330403 FORWARD LENGTH=877;; (*ITAG) Solyc01g091480.2.1 (e_value=8e-75) genomic_reference:SL2.40ch01 gene_region:76867639-76877375 transcript_region:SL2.40ch01:76867639..76877375- go_terms:GO:0005515,GO:0015271 functional_description:"Kinesin (AHRD V1 *-*- D2VUW4_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0005515,GO:0015271 NbS00029864g0002.1 protein NbS00000665g0002.1 protein NbS00007015g0008.1 protein NbC25788052g0001.1 protein NbS00010939g0017.1 protein NbS00015734g0212.1 protein NbC23649577g0001.1 protein ; (*GB) gi|255552758|ref|XP_002517422.1| (e_value=3e-36) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q9LFQ3|SNL2_ARATH (e_value=2e-33) Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2;; (*TAIR) AT5G15020.2 (e_value=1e-34) | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355;; (*ITAG) Solyc02g067570.2.1 (e_value=6e-39) genomic_reference:SL2.40ch02 gene_region:32299931-32312247 transcript_region:SL2.40ch02:32299931..32312247+ go_terms:GO:0003714 functional_description:"Paired amphipathic helix protein SIN3 (AHRD V1 *--- B3LJ52_YEAS1); contains Interpro domain(s) IPR013194 Histone deacetylase interacting "; GO:0003714 NbS00040184g0002.1 protein ; (*GB) gi|357491027|ref|XP_003615801.1| (e_value=5e-79) Ubiquitin-activating enzyme E1 [Medicago truncatula];; (*SWP) sp|P92974|UBE12_ARATH (e_value=1e-75) Ubiquitin-activating enzyme E1 2 OS=Arabidopsis thaliana GN=UBA2 PE=2 SV=1;; (*TAIR) AT5G06460.1 (e_value=1e-76) | Symbols: ATUBA2, UBA 2 | ubiquitin activating enzyme 2 | chr5:1970239-1974382 FORWARD LENGTH=1077;; (*ITAG) Solyc06g007320.2.1 (e_value=4e-85) genomic_reference:SL2.40ch06 gene_region:1338607-1348621 transcript_region:SL2.40ch06:1338607..1348621- go_terms:GO:0006464,GO:0008152,GO:0003824 functional_description:"Ubiquitin-activating enzyme E1 (AHRD V1 ***- B9SKU8_RICCO); contains Interpro domain(s) IPR018075 Ubiquitin-activating enzyme, E1 "; GO:0006464,GO:0008152,GO:0003824 NbS00021506g0009.1 protein NbS00001814g0004.1 protein ; (*GB) gi|356553917|ref|XP_003545297.1| (e_value=3e-39) PREDICTED: protein OSB1, mitochondrial-like [Glycine max];; (*SWP) sp|Q9SX99|OSB1_ARATH (e_value=3e-29) Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1;; (*TAIR) AT1G47720.1 (e_value=2e-30) | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261;; (*ITAG) Solyc04g079410.2.1 (e_value=2e-103) genomic_reference:SL2.40ch04 gene_region:61512653-61516019 transcript_region:SL2.40ch04:61512653..61516019+ go_terms:GO:0003697 functional_description:"Single-stranded DNA binding protein (AHRD V1 **-* D7KGI0_ARALY); contains Interpro domain(s) IPR000424 Primosome PriB/single-strand DNA-binding "; GO:0003697 NbS00007938g0005.1 protein ; (*GB) gi|6691123|gb|AAF24496.1|AF213695_1 (e_value=5e-16) FH protein NFH1 [Nicotiana tabacum]; NbS00003328g0007.1 protein NbS00003328g0010.1 protein NbS00007231g0002.1 protein NbS00007843g0006.1 protein NbS00007843g0204.1 protein NbS00007843g0205.1 protein NbS00007843g0206.1 protein NbS00009111g0011.1 protein ; (*GB) gi|54261828|gb|AAV31178.1| (e_value=2e-15) Putative transposase, identical [Solanum tuberosum];; (*ITAG) Solyc03g093100.1.1 (e_value=9e-26) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch03 gene_region:47724295-47726785 transcript_region:SL2.40ch03:47724295..47726785- go_terms:GO:0008270 functional_description:"Mutator-like transposase (AHRD V1 ***- Q9FH43_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; GO:0008270 NbS00002388g0104.1 protein NbS00002388g0204.1 protein NbS00002388g0206.1 protein NbC26046791g0001.1 protein ; (*GB) gi|255582566|ref|XP_002532066.1| (e_value=6e-20) importin beta-3, putative [Ricinus communis];; (*TAIR) AT5G19820.1 (e_value=1e-16) | Symbols: emb2734 | ARM repeat superfamily protein | chr5:6695731-6701247 REVERSE LENGTH=1116;; (*ITAG) Solyc01g044360.2.1 (e_value=4e-21) genomic_reference:SL2.40ch01 gene_region:38315802-38327517 transcript_region:SL2.40ch01:38315802..38327517+ go_terms:GO:0008565 functional_description:"Importin beta-3 (AHRD V1 **-- Q16TN4_AEDAE); contains Interpro domain(s) IPR011989 Armadillo-like helical "; GO:0008565 NbS00018286g0004.1 protein NbS00018286g0006.1 protein NbS00013066g0001.1 protein ; (*GB) gi|479090|emb|CAA55655.1| (e_value=8e-20) sulfate adenylyltransferase [Solanum tuberosum];; (*SWP) sp|Q9LIK9|APS1_ARATH (e_value=6e-20) ATP sulfurylase 1, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=1 SV=1;; (*TAIR) AT3G22890.1 (e_value=4e-21) | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112837-8114734 FORWARD LENGTH=463;; (*ITAG) Solyc09g082860.2.1 (e_value=6e-22) genomic_reference:SL2.40ch09 gene_region:63941988-63946072 transcript_region:SL2.40ch09:63941988..63946072+ go_terms:GO:0004781 functional_description:"Sulfate adenylyltransferase (AHRD V1 **** Q43183_SOLTU); contains Interpro domain(s) IPR002650 ATP-sulfurylase "; GO:0004781 NbS00026435g0002.1 protein ; (*GB) gi|147857680|emb|CAN82881.1| (e_value=4e-33) hypothetical protein VITISV_008555 [Vitis vinifera];; (*SWP) sp|Q8VYG3|GUN16_ARATH (e_value=9e-26) Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1;; (*TAIR) AT3G43860.1 (e_value=7e-27) | Symbols: AtGH9A4, GH9A4 | glycosyl hydrolase 9A4 | chr3:15707183-15709438 FORWARD LENGTH=486;; (*ITAG) Solyc06g066120.2.1 (e_value=1e-46) genomic_reference:SL2.40ch06 gene_region:37838082-37841295 transcript_region:SL2.40ch06:37838082..37841295+ go_terms:GO:0005975,GO:0003824 functional_description:"Endoglucanase (AHRD V1 ***- B6U6U5_MAIZE); contains Interpro domain(s) IPR001701 Glycoside hydrolase, family 9 "; GO:0005975,GO:0003824 NbS00005871g0011.1 protein NbS00005871g0005.1 protein NbS00005871g0006.1 protein NbS00026042g0008.1 protein NbS00026042g0009.1 protein NbS00008477g0011.1 protein ; (*GB) gi|253796258|gb|ACT35733.1| (e_value=7e-22) SLF-interacting SKP1 [Petunia x hybrida];; (*SWP) sp|O81057|ASK14_ARATH (e_value=1e-17) SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1;; (*TAIR) AT1G20140.1 (e_value=5e-19) | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-6987079 FORWARD LENGTH=163;; (*ITAG) Solyc11g008400.1.1 (e_value=7e-24) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch11 gene_region:2602593-2604034 transcript_region:SL2.40ch11:2602593..2604034+ go_terms:GO:0005515,GO:0006511 functional_description:"SKP1-like protein (AHRD V1 ***- Q2PH53_SILLA); contains Interpro domain(s) IPR016897 E3 ubiquitin ligase, SCF complex, Skp subunit "; GO:0005515,GO:0006511 NbS00029312g0006.1 protein NbS00003667g0007.1 protein NbS00013878g0008.1 protein NbS00010282g0007.1 protein NbS00010282g0008.1 protein NbS00008180g0002.1 protein NbS00005725g0006.1 protein ; (*GB) gi|3121837|sp|O04940.1|CDS1_SOLTU (e_value=7e-23) RecName: Full=Phosphatidate cytidylyltransferase; AltName: Full=CDP-DAG synthase; AltName: Full=CDP-DG synthase; AltName: Full=CDP-diacylglycerol synthase; Short=CDS; AltName: Full=CDP-diglyceride pyrophosphorylase; AltName: Full=CDP-diglyceride synthase; AltName: Full=CTP:phosphatidate cytidylyltransferase;; (*SWP) sp|O04940|CDS1_SOLTU (e_value=2e-24) Phosphatidate cytidylyltransferase OS=Solanum tuberosum GN=CDS1 PE=2 SV=1;; (*TAIR) AT1G62430.1 (e_value=5e-24) | Symbols: ATCDS1, CDS1 | CDP-diacylglycerol synthase 1 | chr1:23106274-23108923 REVERSE LENGTH=421;; (*ITAG) Solyc03g005410.2.1 (e_value=1e-25) genomic_reference:SL2.40ch03 gene_region:272416-288140 transcript_region:SL2.40ch03:272416..288140- go_terms:GO:0004605 functional_description:"Phosphatidate cytidylyltransferase (AHRD V1 **** B9RXC8_RICCO); contains Interpro domain(s) IPR016720 Phosphatidate cytidylyltransferase, eukaryota "; GO:0004605 NbS00009375g0002.1 protein NbS00009375g0003.1 protein NbS00022650g0006.1 protein ; (*GB) gi|255569209|ref|XP_002525573.1| (e_value=2e-72) Exportin-7, putative [Ricinus communis];; (*SWP) sp|Q704U0|XPO7A_XENLA (e_value=1e-35) Exportin-7-A OS=Xenopus laevis GN=xpo7-a PE=1 SV=1;; (*TAIR) AT5G06120.2 (e_value=1e-69) | Symbols: | ARM repeat superfamily protein | chr5:1845309-1852601 FORWARD LENGTH=1052;; (*ITAG) Solyc01g056520.2.1 (e_value=4e-98) genomic_reference:SL2.40ch01 gene_region:47432419-47470048 transcript_region:SL2.40ch01:47432419..47470048- go_terms:GO:0005049,GO:0008536 functional_description:"RAN binding protein 16-like (AHRD V1 **-* Q9LHS4_ARATH); contains Interpro domain(s) IPR001494 Importin-beta, N-terminal "; GO:0005049,GO:0008536 NbS00021550g0004.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=8e-18) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc11g013210.1.1 (e_value=4e-13) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:6122461-6123055 transcript_region:SL2.40ch11:6122461..6123055- functional_description:"Unknown Protein (AHRD V1)"; NbS00021550g0010.1 protein NbS00039926g0001.1 protein ; (*GB) gi|255540397|ref|XP_002511263.1| (e_value=3e-30) transferase, transferring glycosyl groups, putative [Ricinus communis];; (*SWP) sp|Q9SJM0|CALSA_ARATH (e_value=4e-31) Callose synthase 10 OS=Arabidopsis thaliana GN=CALS10 PE=2 SV=5;; (*TAIR) AT2G36850.1 (e_value=3e-32) | Symbols: ATGSL08, GSL8, GSL08, ATGSL8, CHOR | glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904;; (*ITAG) Solyc03g111560.2.1 (e_value=2e-41) genomic_reference:SL2.40ch03 gene_region:56209301-56240154 transcript_region:SL2.40ch03:56209301..56240154+ functional_description:"Glucan synthase like 7 (AHRD V1 ***- D8T771_SELML)"; NbS00039394g0001.1 protein ; (*GB) gi|224107853|ref|XP_002314626.1| (e_value=4e-33) aminophospholipid ATPase [Populus trichocarpa];; (*SWP) sp|Q9XIE6|ALA3_ARATH (e_value=1e-32) Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2;; (*TAIR) AT1G59820.1 (e_value=8e-34) | Symbols: ALA3 | aminophospholipid ATPase 3 | chr1:22011599-22020023 FORWARD LENGTH=1213;; (*ITAG) Solyc01g011100.2.1 (e_value=1e-46) genomic_reference:SL2.40ch01 gene_region:7606130-7621713 transcript_region:SL2.40ch01:7606130..7621713+ go_terms:GO:0004012 functional_description:"Phospholipid-transporting ATPase (AHRD V1 **** B6JZB6_SCHJY); contains Interpro domain(s) IPR006539 ATPase, P-type, phospholipid-translocating, flippase "; GO:0004012 NbS00038260g0001.1 protein NbS00038260g0002.1 protein NbS00013838g0002.1 protein NbS00039418g0002.1 protein NbS00039418g0004.1 protein NbS00020272g0004.1 protein NbS00037852g0005.1 protein NbS00021928g0007.1 protein NbS00052596g0001.1 protein ; (*GB) gi|359483589|ref|XP_003632983.1| (e_value=4e-15) PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera];; (*ITAG) Solyc02g071360.2.1 (e_value=8e-26) genomic_reference:SL2.40ch02 gene_region:35415823-35419393 transcript_region:SL2.40ch02:35415823..35419393- go_terms:GO:0016706,GO:0016682 functional_description:"1-aminocyclopropane-1-carboxylate oxidase 1 (AHRD V1 **-- ACCO1_MALDO); contains Interpro domain(s) IPR005123 Oxoglutarate and iron-dependent oxygenase "; GO:0016706,GO:0016682 NbS00048595g0007.1 protein NbS00019781g0005.1 protein NbS00024881g0002.1 protein NbS00047014g0001.1 protein ; (*GB) gi|255563554|ref|XP_002522779.1| (e_value=9e-23) cellulose synthase, putative [Ricinus communis];; (*SWP) sp|Q0DXZ1|CSLE2_ORYSJ (e_value=1e-14) Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1;; (*ITAG) Solyc07g065660.2.1 (e_value=8e-33) genomic_reference:SL2.40ch07 gene_region:64569421-64573269 transcript_region:SL2.40ch07:64569421..64573269- go_terms:GO:0016759 functional_description:"Cellulose synthase (AHRD V1 **** Q2HT17_MEDTR); contains Interpro domain(s) IPR005150 Cellulose synthase "; GO:0016759 NbS00022804g0007.1 protein NbS00022804g0008.1 protein ; (*ITAG) Solyc11g039800.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:26303830-26304345 transcript_region:SL2.40ch11:26303830..26304345+ functional_description:"Unknown Protein (AHRD V1)"; NbS00011679g0004.1 protein NbS00010126g0005.1 protein NbS00010126g0008.1 protein ; (*GB) gi|255605097|ref|XP_002538338.1| (e_value=1e-28) conserved hypothetical protein [Ricinus communis]; NbS00010126g0009.1 protein NbS00014440g0004.1 protein ; (*TAIR) AT2G42975.1 (e_value=2e-14) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873998-17874820 FORWARD LENGTH=187;; (*ITAG) Solyc07g056240.2.1 (e_value=1e-16) genomic_reference:SL2.40ch07 gene_region:61404309-61406623 transcript_region:SL2.40ch07:61404309..61406623- functional_description:"Unknown Protein (AHRD V1)"; NbS00010458g0004.1 protein NbS00010272g0002.1 protein NbC24246624g0001.1 protein ; (*ITAG) Solyc11g005440.1.1 (e_value=3e-27) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:348912-354558 transcript_region:SL2.40ch11:348912..354558+ functional_description:"Limkain b1 (Lkap) (Fragment) (AHRD V1 *--- Q28FZ9_XENTR); contains Interpro domain(s) IPR007491 Protein of unknown function DUF537 "; NbS00054438g0001.1 protein ; (*GB) gi|219921318|emb|CAQ51477.1| (e_value=1e-26) putative MATE transporter [Nicotiana tabacum];; (*TAIR) AT1G15170.1 (e_value=2e-15) | Symbols: | MATE efflux family protein | chr1:5220690-5222756 FORWARD LENGTH=481;; (*ITAG) Solyc02g091070.2.1 (e_value=2e-26) genomic_reference:SL2.40ch02 gene_region:47068548-47070572 transcript_region:SL2.40ch02:47068548..47070572- go_terms:GO:0005215 functional_description:"Multidrug resistance protein mdtK (AHRD V1 *-*- MDTK_EDWI9); contains Interpro domain(s) IPR015521 MATE family transporter related protein "; GO:0005215 NbS00015979g0001.1 protein NbS00020261g0010.1 protein NbS00052064g0006.1 protein ; (*GB) gi|147811750|emb|CAN59756.1| (e_value=0.0) hypothetical protein VITISV_034568 [Vitis vinifera];; (*TAIR) AT5G45540.1 (e_value=1e-43) | Symbols: | Protein of unknown function (DUF594) | chr5:18458294-18460705 REVERSE LENGTH=803;; (*ITAG) Solyc12g094650.1.1 (e_value=4e-127) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:63156769-63159523 transcript_region:SL2.40ch12:63156769..63159523- go_terms:GO:0004867 functional_description:"Genomic DNA chromosome 5 P1 clone MFC19 (AHRD V1 ***- Q9FHI2_ARATH); contains Interpro domain(s) IPR007658 Protein of unknown function DUF594 "; GO:0004867 NbS00019969g0001.1 protein NbS00062130g0002.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=4e-19) hypothetical protein [Beta vulgaris subsp. vulgaris]; NbS00009251g0013.1 protein NbS00009251g0014.1 protein NbS00009251g0009.1 protein ; (*GB) gi|224081371|ref|XP_002306386.1| (e_value=3e-35) predicted protein [Populus trichocarpa];; (*TAIR) AT3G19740.1 (e_value=6e-33) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:6855944-6862930 REVERSE LENGTH=993;; (*ITAG) Solyc02g014350.2.1 (e_value=2e-57) genomic_reference:SL2.40ch02 gene_region:6990342-7014406 transcript_region:SL2.40ch02:6990342..7014406+ go_terms:GO:0005524,GO:0017111 functional_description:"26S protease regulatory subunit 8 homolog (AHRD V1 *--- PRS8_ENCCU); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "; GO:0005524,GO:0017111 NbS00035923g0005.1 protein NbS00008495g0008.1 protein NbS00018006g0002.1 protein ; (*GB) gi|297802758|ref|XP_002869263.1| (e_value=3e-20) hypothetical protein ARALYDRAFT_491462 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT4G32560.3 (e_value=2e-20) | Symbols: | paramyosin-related | chr4:15713866-15716035 FORWARD LENGTH=304; NbS00022599g0005.1 protein ; (*GB) gi|444002|emb|CAA54393.1| (e_value=3e-27) HSR203J [Nicotiana tabacum];; (*ITAG) Solyc02g069800.1.1 (e_value=2e-28) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch02 gene_region:34203354-34204361 transcript_region:SL2.40ch02:34203354..34204361- go_terms:GO:0008152 functional_description:"CXE carboxylesterase (AHRD V1 **-- Q0ZPU6_ACTCH); contains Interpro domain(s) IPR013094 Alpha/beta hydrolase fold-3 "; GO:0008152 NbS00028356g0001.1 protein NbS00019720g0009.1 protein NbS00004811g0001.1 protein ; (*TAIR) AT1G58250.1 (e_value=4e-15) | Symbols: SAB | Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | chr1:21587317-21601373 REVERSE LENGTH=2607;; (*ITAG) Solyc04g076540.2.1 (e_value=4e-16) genomic_reference:SL2.40ch04 gene_region:59021459-59037413 transcript_region:SL2.40ch04:59021459..59037413- functional_description:"Aberrant pollen transmission 1 (AHRD V1 **-- Q4JQG0_MAIZE); contains Interpro domain(s) IPR019443 Protein of unknown function FMP27, domain-6, C-terminal "; NbS00009499g0005.1 protein NbS00009499g0007.1 protein NbS00012936g0010.1 protein ; (*TAIR) AT5G11700.2 (e_value=1e-12) | Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). | chr5:3762961-3771123 REVERSE LENGTH=1476;; (*ITAG) Solyc08g065980.2.1 (e_value=6e-16) genomic_reference:SL2.40ch08 gene_region:51622274-51645881 transcript_region:SL2.40ch08:51622274..51645881+ functional_description:"Glycine-rich protein (AHRD V1 ***- D7M4B5_ARALY)"; NbS00015336g0002.1 protein NbS00006694g0007.1 protein NbS00008392g0003.1 protein NbS00008392g0004.1 protein NbS00005106g0002.1 protein NbS00009136g0003.1 protein NbS00040195g0002.1 protein NbS00007553g0006.1 protein NbS00003864g0003.1 protein NbS00016642g0005.1 protein NbS00028355g0011.1 protein NbS00057145g0002.1 protein NbS00008494g0008.1 protein NbS00004699g0010.1 protein NbS00000505g0003.1 protein NbS00006400g0002.1 protein NbS00016783g0003.1 protein NbS00048234g0004.1 protein NbS00039262g0006.1 protein NbS00048824g0004.1 protein NbS00001671g0103.1 protein NbS00001671g0104.1 protein NbS00001671g0105.1 protein NbS00022473g0002.1 protein NbS00004977g0002.1 protein NbS00044378g0003.1 protein NbS00026391g0006.1 protein NbS00004225g0006.1 protein NbS00007229g0111.1 protein NbS00007229g0113.1 protein NbS00007229g0109.1 protein NbS00007229g0110.1 protein NbS00032179g0002.1 protein NbS00045244g0005.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=7e-55) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc09g008110.1.1 (e_value=7e-28) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch09 gene_region:1586006-1589552 transcript_region:SL2.40ch09:1586006..1589552- functional_description:"Mutator-like transposase (AHRD V1 *--- Q94HK4_ORYSA); contains Interpro domain(s) IPR004332 Transposase, MuDR, plant "; NbS00011374g0010.1 protein ; (*GB) gi|224115082|ref|XP_002316935.1| (e_value=6e-49) predicted protein [Populus trichocarpa];; (*TAIR) AT5G54240.1 (e_value=3e-44) | Symbols: | Protein of unknown function (DUF1223) | chr5:22023339-22024461 REVERSE LENGTH=282;; (*ITAG) Solyc07g063620.2.1 (e_value=3e-58) genomic_reference:SL2.40ch07 gene_region:63268542-63271127 transcript_region:SL2.40ch07:63268542..63271127+ functional_description:"Uncharacterized secreted protein (AHRD V1 **-- B6TUX2_MAIZE); contains Interpro domain(s) IPR010634 Protein of unknown function DUF1223 "; NbS00053872g0001.1 protein NbS00038876g0004.1 protein NbS00038876g0005.1 protein ; (*GB) gi|27529834|dbj|BAC53932.1| (e_value=3e-12) hypothetical protein [Nicotiana tabacum]; NbS00000836g0002.1 protein NbS00014025g0004.1 protein NbS00010768g0008.1 protein NbS00013310g0005.1 protein NbS00013730g0011.1 protein NbC26064567g0001.1 protein ; (*ITAG) Solyc04g051410.2.1 (e_value=4e-45) genomic_reference:SL2.40ch04 gene_region:49683384-49690786 transcript_region:SL2.40ch04:49683384..49690786+ go_terms:GO:0004843 functional_description:"Ubiquitin carboxyl-terminal hydrolase (AHRD V1 **** A5B229_VITVI); contains Interpro domain(s) IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "; GO:0004843 NbS00005635g0102.1 protein NbS00005635g0104.1 protein NbS00002583g0006.1 protein NbS00003832g0113.1 protein NbS00003832g0109.1 protein NbS00017331g0004.1 protein NbS00020313g0006.1 protein NbS00020313g0007.1 protein NbS00017564g0001.1 protein NbS00033671g0012.1 protein NbS00042683g0002.1 protein NbS00012945g0001.1 protein NbS00012945g0002.1 protein NbS00017502g0003.1 protein NbS00017502g0004.1 protein NbS00016217g0013.1 protein NbS00016217g0014.1 protein NbS00016217g0008.1 protein NbS00016217g0009.1 protein NbS00046405g0003.1 protein NbS00046405g0004.1 protein NbS00025692g0003.1 protein ; (*ITAG) Solyc02g078430.2.1 (e_value=6e-20) genomic_reference:SL2.40ch02 gene_region:37689093-37690357 transcript_region:SL2.40ch02:37689093..37690357+ functional_description:"Unknown Protein (AHRD V1)"; NbS00022284g0012.1 protein NbS00022284g0007.1 protein NbS00004559g0004.1 protein NbS00005855g0001.1 protein NbS00005855g0002.1 protein NbS00000816g0001.1 protein ; (*GB) gi|357494567|ref|XP_003617572.1| (e_value=5e-24) Bromodomain-containing protein [Medicago truncatula];; (*TAIR) AT5G55040.2 (e_value=4e-25) | Symbols: | DNA-binding bromodomain-containing protein | chr5:22327727-22331703 REVERSE LENGTH=916;; (*ITAG) Solyc07g064700.2.1 (e_value=8e-28) genomic_reference:SL2.40ch07 gene_region:63956571-63962837 transcript_region:SL2.40ch07:63956571..63962837- go_terms:GO:0003677 functional_description:"DNA-binding bromodomain-containing protein (AHRD V1 *-** D7KJ43_ARALY); contains Interpro domain(s) IPR001487 Bromodomain "; GO:0003677 NbS00030958g0005.1 protein NbS00025508g0001.1 protein NbS00025508g0002.1 protein ; (*GB) gi|359487804|ref|XP_002280635.2| (e_value=1e-21) PREDICTED: uncharacterized protein LOC100263126 [Vitis vinifera];; (*TAIR) AT1G55040.1 (e_value=1e-15) | Symbols: | zinc finger (Ran-binding) family protein | chr1:20534895-20538901 FORWARD LENGTH=849;; (*ITAG) Solyc01g099230.2.1 (e_value=5e-47) genomic_reference:SL2.40ch01 gene_region:81291134-81296687 transcript_region:SL2.40ch01:81291134..81296687+ go_terms:GO:0005488 functional_description:"Zinc finger protein VAR3, chloroplastic (AHRD V1 *--- VAR3_ARATH); contains Interpro domain(s) IPR001876 Zinc finger, RanBP2-type "; GO:0005488 NbS00025508g0003.1 protein ; (*GB) gi|113205233|gb|AAT39304.2| (e_value=2e-43) Transposon MuDR mudrA-like protein, putative [Solanum demissum];; (*ITAG) Solyc04g050450.1.1 (e_value=1e-24) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:46388272-46390482 transcript_region:SL2.40ch04:46388272..46390482- functional_description:"Mutator-like transposase-like (AHRD V1 *-*- Q9FH11_ARATH); contains Interpro domain(s) IPR018289 MULE transposase, conserved domain "; NbS00006052g0001.1 protein NbS00056118g0001.1 protein NbS00004069g0005.1 protein NbS00043174g0001.1 protein NbS00052400g0007.1 protein ; (*GB) gi|255551749|ref|XP_002516920.1| (e_value=4e-64) protein arginine n-methyltransferase, putative [Ricinus communis];; (*SWP) sp|A3KPF2|ANM14_ARATH (e_value=2e-61) Probable histone-arginine methyltransferase 1.4 OS=Arabidopsis thaliana GN=PRMT14 PE=2 SV=1;; (*TAIR) AT5G49020.2 (e_value=1e-62) | Symbols: ATPRMT4A, PRMT4A | protein arginine methyltransferase 4A | chr5:19871341-19874683 FORWARD LENGTH=526;; (*ITAG) Solyc05g054240.2.1 (e_value=4e-75) genomic_reference:SL2.40ch05 gene_region:63345136-63354382 transcript_region:SL2.40ch05:63345136..63354382+ go_terms:GO:0008168 functional_description:"Arginine N-methyltransferase family protein (AHRD V1 ***- D7L611_ARALY); contains Interpro domain(s) IPR007848 Methyltransferase small "; GO:0008168 NbS00008106g0004.1 protein NbS00011245g0001.1 protein NbS00029296g0004.1 protein NbS00047399g0004.1 protein ; (*ITAG) Solyc06g082100.2.1 (e_value=6e-17) genomic_reference:SL2.40ch06 gene_region:44321645-44330520 transcript_region:SL2.40ch06:44321645..44330520+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00047399g0006.1 protein NbS00061679g0002.1 protein NbS00007893g0011.1 protein NbS00007893g0016.1 protein NbS00007893g0019.1 protein NbS00007893g0009.1 protein ; (*ITAG) Solyc01g094420.2.1 (e_value=4e-14) genomic_reference:SL2.40ch01 gene_region:77677830-77681809 transcript_region:SL2.40ch01:77677830..77681809+ go_terms:GO:0006241 functional_description:"Ulp1 protease family protein (AHRD V1 *-*- Q2A9J8_BRAOL); contains Interpro domain(s) IPR015410 Region of unknown function DUF1985 "; GO:0006241 NbS00011710g0006.1 protein NbS00060480g0002.1 protein NbS00017968g0003.1 protein NbS00017968g0005.1 protein ; (*ITAG) Solyc00g047190.1.1 (e_value=1e-18) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch00 gene_region:13506070-13506387 transcript_region:SL2.40ch00:13506070..13506387+ functional_description:"Unknown Protein (AHRD V1)"; NbS00017968g0006.1 protein NbS00002677g0006.1 protein NbS00002677g0103.1 protein NbS00002677g0105.1 protein NbS00002677g0108.1 protein NbS00002677g0213.1 protein NbS00002677g0207.1 protein NbS00002677g0209.1 protein NbS00001220g0003.1 protein NbC24059153g0001.1 protein ; (*GB) gi|147766689|emb|CAN69700.1| (e_value=2e-13) hypothetical protein VITISV_003292 [Vitis vinifera];; (*ITAG) Solyc07g066350.1.1 (e_value=3e-25) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch07 gene_region:65045913-65047115 transcript_region:SL2.40ch07:65045913..65047115- functional_description:"Unknown Protein (AHRD V1)"; NbS00057604g0002.1 protein ; (*GB) gi|224140461|ref|XP_002323601.1| (e_value=1e-22) predicted protein [Populus trichocarpa];; (*SWP) sp|Q8GYB1|NUD15_ARATH (e_value=9e-16) Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2;; (*TAIR) AT1G28960.2 (e_value=7e-17) | Symbols: ATNUDT15, ATNUDX15, NUDX15 | nudix hydrolase homolog 15 | chr1:10110020-10111607 REVERSE LENGTH=285;; (*ITAG) Solyc10g008770.2.1 (e_value=3e-18) genomic_reference:SL2.40ch10 gene_region:2835103-2839953 transcript_region:SL2.40ch10:2835103..2839953- go_terms:GO:0003986,GO:0010945 functional_description:"NUDIX hydrolase (AHRD V1 **** Q4ZWZ8_PSEU2); contains Interpro domain(s) IPR000086 NUDIX hydrolase domain "; GO:0003986,GO:0010945 NbS00013781g0003.1 protein ; (*ITAG) Solyc04g057990.2.1 (e_value=2e-41) genomic_reference:SL2.40ch04 gene_region:54248696-54262878 transcript_region:SL2.40ch04:54248696..54262878- go_terms:GO:0005524,GO:0008270 functional_description:"mRNA 3&apos-end-processing protein YTH1 (AHRD V1 *--- B6JVP1_SCHJY); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005524,GO:0008270 NbS00013781g0004.1 protein ; (*GB) gi|225459673|ref|XP_002284626.1| (e_value=7e-42) PREDICTED: uncharacterized protein LOC100262507 [Vitis vinifera];; (*TAIR) AT1G21580.1 (e_value=2e-11) | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:7557822-7565655 REVERSE LENGTH=2166;; (*ITAG) Solyc04g057990.2.1 (e_value=4e-179) genomic_reference:SL2.40ch04 gene_region:54248696-54262878 transcript_region:SL2.40ch04:54248696..54262878- go_terms:GO:0005524,GO:0008270 functional_description:"mRNA 3&apos-end-processing protein YTH1 (AHRD V1 *--- B6JVP1_SCHJY); contains Interpro domain(s) IPR000571 Zinc finger, CCCH-type "; GO:0005524,GO:0008270 NbS00061294g0004.1 protein NbS00037541g0006.1 protein NbS00007527g0001.1 protein NbS00006995g0009.1 protein NbS00055919g0005.1 protein ; (*GB) gi|255578282|ref|XP_002530008.1| (e_value=2e-31) Pectinesterase precursor, putative [Ricinus communis];; (*SWP) sp|Q9LVQ0|PME31_ARATH (e_value=1e-24) Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1;; (*TAIR) AT3G29090.1 (e_value=9e-26) | Symbols: PME31, ATPME31 | pectin methylesterase 31 | chr3:11073804-11075335 FORWARD LENGTH=317;; (*ITAG) Solyc00g027770.2.1 (e_value=5e-36) genomic_reference:SL2.40ch00 gene_region:12431213-12436969 transcript_region:SL2.40ch00:12431213..12436969+ go_terms:GO:0030599 functional_description:"Pectinesterase (AHRD V1 **** B9SVI9_RICCO); contains Interpro domain(s) IPR000070 Pectinesterase, catalytic "; GO:0030599 NbS00006311g0014.1 protein NbS00006311g0018.1 protein NbS00010027g0011.1 protein NbS00010027g0013.1 protein NbS00010027g0014.1 protein NbS00000264g0007.1 protein NbS00012812g0009.1 protein NbS00011694g0003.1 protein ; (*ITAG) Solyc09g011720.2.1 (e_value=2e-35) genomic_reference:SL2.40ch09 gene_region:5009237-5012128 transcript_region:SL2.40ch09:5009237..5012128+ functional_description:"Unknown Protein (AHRD V1)"; NbS00023735g0003.1 protein NbS00023735g0004.1 protein NbS00001828g0003.1 protein ; (*GB) gi|358345825|ref|XP_003636975.1| (e_value=5e-31) Trehalose-phosphate phosphatase [Medicago truncatula];; (*SWP) sp|Q6ZGP8|TPP4_ORYSJ (e_value=2e-29) Probable trehalose-phosphate phosphatase 4 OS=Oryza sativa subsp. japonica GN=TPP4 PE=2 SV=1;; (*TAIR) AT4G39770.1 (e_value=6e-30) | Symbols: TPPH | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr4:18449138-18451218 REVERSE LENGTH=349;; (*ITAG) Solyc04g082550.1.1 (e_value=3e-51) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:63780424-63782753 transcript_region:SL2.40ch04:63780424..63782753- go_terms:GO:0004805 functional_description:"Trehalose-6-phosphate phosphatase (AHRD V1 **** O64897_ARATH); contains Interpro domain(s) IPR003337 Trehalose-phosphatase "; GO:0004805 NbS00001828g0004.1 protein ; (*GB) gi|297734865|emb|CBI17099.3| (e_value=4e-64) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q9FYC7|PDAT2_ARATH (e_value=2e-57) Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1;; (*TAIR) AT3G44830.1 (e_value=1e-58) | Symbols: | Lecithin:cholesterol acyltransferase family protein | chr3:16368890-16372356 FORWARD LENGTH=665;; (*ITAG) Solyc11g066710.1.1 (e_value=2e-75) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:49552357-49557089 transcript_region:SL2.40ch11:49552357..49557089- go_terms:GO:0006629 functional_description:"Phospholipid diacylglycerol acyltransferase (AHRD V1 ***- B3LPN2_YEAS1); contains Interpro domain(s) IPR003386 Lecithin:cholesterol acyltransferase "; GO:0006629 NbS00003913g0004.1 protein NbS00057817g0001.1 protein ; (*ITAG) Solyc01g096740.2.1 (e_value=7e-16) genomic_reference:SL2.40ch01 gene_region:79513037-79519402 transcript_region:SL2.40ch01:79513037..79519402- go_terms:GO:0005351 functional_description:"Transporter major facilitator family (AHRD V1 **-- C4M254_ENTHI); contains Interpro domain(s) IPR016196 Major facilitator superfamily, general substrate transporter "; GO:0005351 NbS00011217g0003.1 protein NbC23927999g0001.1 protein ; (*GB) gi|225464033|ref|XP_002267203.1| (e_value=4e-26) PREDICTED: ABC transporter I family member 6, chloroplastic [Vitis vinifera];; (*SWP) sp|Q9CAF5|AB6I_ARATH (e_value=4e-23) ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana GN=ABCI6 PE=1 SV=1;; (*TAIR) AT3G10670.1 (e_value=3e-24) | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein 7 | chr3:3335325-3337304 REVERSE LENGTH=338;; (*ITAG) Solyc06g048540.2.1 (e_value=1e-30) genomic_reference:SL2.40ch06 gene_region:27702205-27706442 transcript_region:SL2.40ch06:27702205..27706442- go_terms:GO:0015623 functional_description:"FeS assembly ATPase SufC (AHRD V1 **** B5W7S4_SPIMA); contains Interpro domain(s) IPR010230 ATPase SufC, SUF system FeS cluster assembly "; GO:0015623 NbS00028075g0002.1 protein NbS00036904g0004.1 protein NbS00029910g0003.1 protein NbC23438069g0001.1 protein ; (*GB) gi|224128268|ref|XP_002329122.1| (e_value=6e-18) predicted protein [Populus trichocarpa];; (*ITAG) Solyc07g062940.2.1 (e_value=4e-28) genomic_reference:SL2.40ch07 gene_region:62782190-62797981 transcript_region:SL2.40ch07:62782190..62797981- go_terms:GO:0006468 functional_description:"Serine/threonine kinase 25 (AHRD V1 *-*- Q6V9V7_CHICK); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00016575g0001.1 protein ; (*GB) gi|11132775|sp|O23826.1|K125_TOBAC (e_value=4e-31) RecName: Full=125 kDa kinesin-related protein;; (*SWP) sp|O23826|K125_TOBAC (e_value=1e-32) 125 kDa kinesin-related protein OS=Nicotiana tabacum GN=TKRP125 PE=1 SV=1;; (*TAIR) AT2G36200.2 (e_value=4e-31) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:15180078-15185189 REVERSE LENGTH=1040;; (*ITAG) Solyc10g083310.1.1 (e_value=1e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:62468762-62477179 transcript_region:SL2.40ch10:62468762..62477179- go_terms:GO:0008574,GO:0005515 functional_description:"Kinesin-5 (AHRD V1 *-*- D2V727_NAEGR); contains Interpro domain(s) IPR001752 Kinesin, motor region "; GO:0008574,GO:0005515 NbS00010932g0002.1 protein NbS00028036g0006.1 protein NbS00006362g0002.1 protein NbS00006362g0106.1 protein NbS00006362g0205.1 protein NbS00020894g0004.1 protein ; (*GB) gi|224102399|ref|XP_002312663.1| (e_value=2e-14) predicted protein [Populus trichocarpa]; NbS00013558g0005.1 protein NbC24893263g0001.1 protein ; (*GB) gi|359474736|ref|XP_002273482.2| (e_value=2e-27) PREDICTED: rop guanine nucleotide exchange factor 1-like [Vitis vinifera];; (*TAIR) AT1G31650.1 (e_value=8e-24) | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide exchange factor 14 | chr1:11326474-11329767 REVERSE LENGTH=576;; (*ITAG) Solyc12g096220.1.1 (e_value=5e-33) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:63577374-63583356 transcript_region:SL2.40ch12:63577374..63583356+ go_terms:GO:0005840,GO:0015934,GO:0005089 functional_description:"60S ribosomal protein L7 (AHRD V1 *-*- D7LR12_ARALY); contains Interpro domain(s) IPR005512 Rop nucleotide exchanger, PRONE "; GO:0005840,GO:0015934,GO:0005089 NbS00011676g0003.1 protein NbS00011920g0005.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=2e-15) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00011920g0007.1 protein NbS00011920g0009.1 protein NbS00017562g0005.1 protein NbS00017562g0009.1 protein NbS00035845g0012.1 protein NbS00035845g0013.1 protein NbS00035845g0015.1 protein NbS00035845g0009.1 protein NbS00041209g0003.1 protein NbS00002166g0001.1 protein NbS00021150g0005.1 protein NbS00021150g0010.1 protein ; (*GB) gi|74267246|dbj|BAE44121.1| (e_value=3e-16) protein phosphatase 2C [Nicotiana benthamiana];; (*ITAG) Solyc06g007190.2.1 (e_value=2e-18) genomic_reference:SL2.40ch06 gene_region:1265654-1267702 transcript_region:SL2.40ch06:1265654..1267702+ go_terms:GO:0004722 functional_description:"Integrin-linked kinase-associated serine/threonine phosphatase 2C (AHRD V1 **** ILKAP_MOUSE); contains Interpro domain(s) IPR015655 Protein phosphatase 2C "; GO:0004722 NbS00023095g0006.1 protein NbS00006718g0004.1 protein NbS00006718g0008.1 protein NbS00014561g0008.1 protein NbS00051444g0001.1 protein ; (*GB) gi|85068678|gb|ABC69419.1| (e_value=3e-25) CYP72A56 [Nicotiana tabacum];; (*ITAG) Solyc07g055540.2.1 (e_value=3e-28) genomic_reference:SL2.40ch07 gene_region:60852100-60855974 transcript_region:SL2.40ch07:60852100..60855974- go_terms:GO:0008395,GO:0019825 functional_description:"Cytochrome P450"; GO:0008395,GO:0019825 NbS00008659g0002.1 protein ; (*ITAG) Solyc02g086750.1.1 (e_value=2e-28) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00012267g0003.1 protein ; (*ITAG) Solyc05g009550.2.1 (e_value=4e-25) genomic_reference:SL2.40ch05 gene_region:3762525-3764782 transcript_region:SL2.40ch05:3762525..3764782+ functional_description:"IST1 homolog (AHRD V1 *--- IST1_HUMAN); contains Interpro domain(s) IPR005061 Protein of unknown function DUF292, eukaryotic "; NbS00011117g0013.1 protein NbS00011117g0018.1 protein NbS00011117g0009.1 protein NbS00019941g0001.1 protein NbS00016029g0005.1 protein NbS00016029g0007.1 protein ; (*GB) gi|255548672|ref|XP_002515392.1| (e_value=3e-37) dynamin, putative [Ricinus communis];; (*SWP) sp|Q8S944|DRP3A_ARATH (e_value=9e-35) Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2;; (*TAIR) AT4G33650.1 (e_value=7e-36) | Symbols: ADL2, DRP3A | dynamin-related protein 3A | chr4:16161073-16166587 FORWARD LENGTH=808;; (*ITAG) Solyc08g006600.2.1 (e_value=3e-57) genomic_reference:SL2.40ch08 gene_region:1188325-1206669 transcript_region:SL2.40ch08:1188325..1206669- go_terms:GO:0003924 functional_description:"Dynamin-2 (AHRD V1 ***- D0MQ53_PHYIN); contains Interpro domain(s) IPR000375 Dynamin central region "; GO:0003924 NbS00016029g0009.1 protein NbS00016029g0010.1 protein NbS00000049g0009.1 protein NbS00035912g0006.1 protein NbS00053435g0002.1 protein NbS00011794g0004.1 protein NbS00011794g0005.1 protein NbS00018564g0005.1 protein ; (*GB) gi|359482807|ref|XP_002277513.2| (e_value=5e-91) PREDICTED: casein kinase I isoform delta-like [Vitis vinifera];; (*SWP) sp|P42158|KC1D_ARATH (e_value=6e-77) Casein kinase I isoform delta-like OS=Arabidopsis thaliana GN=At4g26100 PE=2 SV=2;; (*TAIR) AT1G72710.1 (e_value=2e-88) | Symbols: CKL2 | casein kinase 1-like protein 2 | chr1:27372553-27376178 FORWARD LENGTH=465;; (*ITAG) Solyc06g062790.2.1 (e_value=9e-112) genomic_reference:SL2.40ch06 gene_region:36002715-36009438 transcript_region:SL2.40ch06:36002715..36009438+ go_terms:GO:0006468 functional_description:"Casein kinase I-like (AHRD V1 ***- Q8LR51_ORYSJ); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468 NbS00054137g0004.1 protein NbS00044327g0002.1 protein NbS00003003g0001.1 protein NbS00028204g0002.1 protein NbS00010246g0006.1 protein ; (*GB) gi|147767977|emb|CAN60218.1| (e_value=3e-33) hypothetical protein VITISV_006612 [Vitis vinifera];; (*TAIR) AT3G42170.1 (e_value=8e-16) | Symbols: | BED zinc finger ;hAT family dimerisation domain | chr3:14321838-14323928 FORWARD LENGTH=696;; (*ITAG) Solyc10g007470.2.1 (e_value=5e-54) genomic_reference:SL2.40ch10 gene_region:1820475-1822987 transcript_region:SL2.40ch10:1820475..1822987+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT family dimerisation domain containing protein expressed (AHRD V1 **-- Q6AVI0_ORYSJ); contains Interpro domain(s) IPR008906 HAT dimerisation "; GO:0003677,GO:0046983 NbS00010246g0007.1 protein NbS00011241g0001.1 protein NbS00061571g0002.1 protein NbS00033262g0002.1 protein NbS00042242g0002.1 protein ; (*GB) gi|224120842|ref|XP_002318430.1| (e_value=3e-22) predicted protein [Populus trichocarpa];; (*TAIR) AT5G24280.1 (e_value=2e-19) | Symbols: GMI1 | gamma-irradiation and mitomycin c induced 1 | chr5:8251378-8261401 REVERSE LENGTH=1598; NbS00021340g0002.1 protein ; (*GB) gi|283362120|dbj|BAI65913.1| (e_value=2e-42) UDP-sugar:glycosyltransferase [Forsythia x intermedia];; (*SWP) sp|Q40285|UFOG2_MANES (e_value=1e-44) Anthocyanidin 3-O-glucosyltransferase 2 (Fragment) OS=Manihot esculenta GN=GT2 PE=2 SV=1;; (*TAIR) AT1G07250.1 (e_value=4e-40) | Symbols: UGT71C4 | UDP-glucosyl transferase 71C4 | chr1:2225963-2227402 FORWARD LENGTH=479;; (*ITAG) Solyc07g043100.1.1 (e_value=1e-56) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch07 gene_region:53965305-53966711 transcript_region:SL2.40ch07:53965305..53966711+ go_terms:GO:0080043 functional_description:"UDP-glucosyltransferase (AHRD V1 **** A7M6U9_IPONI); contains Interpro domain(s) IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase "; GO:0080043 NbS00023090g0004.1 protein NbS00011339g0004.1 protein ; (*GB) gi|357497263|ref|XP_003618920.1| (e_value=2e-44) mRNA 3'-end-processing protein rna14 [Medicago truncatula];; (*TAIR) AT1G17760.1 (e_value=4e-39) | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:6110208-6116271 REVERSE LENGTH=734;; (*ITAG) Solyc10g050540.1.1 (e_value=2e-49) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45449878-45482671 transcript_region:SL2.40ch10:45449878..45482671- go_terms:GO:0005515,GO:0003729 functional_description:"mRNA 3&apos-end-processing protein rna14 (AHRD V1 **-* B6K4N2_SCHJY); contains Interpro domain(s) IPR008847 Suppressor of forked "; GO:0005515,GO:0003729 NbS00011339g0005.1 protein ; (*GB) gi|356573857|ref|XP_003555072.1| (e_value=2e-18) PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max];; (*TAIR) AT1G17760.1 (e_value=6e-20) | Symbols: CSTF77, ATCSTF77 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:6110208-6116271 REVERSE LENGTH=734;; (*ITAG) Solyc10g050540.1.1 (e_value=2e-21) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:45449878-45482671 transcript_region:SL2.40ch10:45449878..45482671- go_terms:GO:0005515,GO:0003729 functional_description:"mRNA 3&apos-end-processing protein rna14 (AHRD V1 **-* B6K4N2_SCHJY); contains Interpro domain(s) IPR008847 Suppressor of forked "; GO:0005515,GO:0003729 NbS00011339g0007.1 protein NbS00024249g0011.1 protein NbS00006206g0002.1 protein NbS00000648g0012.1 protein NbS00000648g0017.1 protein NbS00000648g0020.1 protein NbS00000648g0024.1 protein ; (*ITAG) Solyc06g074570.1.1 (e_value=1e-18) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch06 gene_region:42527661-42528833 transcript_region:SL2.40ch06:42527661..42528833- functional_description:"Unknown Protein (AHRD V1)"; NbS00000648g0026.1 protein NbS00000648g0027.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=5e-17) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00007196g0011.1 protein NbS00028769g0002.1 protein NbS00048553g0002.1 protein NbS00005338g0006.1 protein NbS00061078g0001.1 protein NbS00024729g0005.1 protein NbS00046358g0002.1 protein ; (*GB) gi|356516857|ref|XP_003527109.1| (e_value=5e-79) PREDICTED: activating signal cointegrator 1 complex subunit 3 [Glycine max];; (*SWP) sp|E9PZJ8|ASCC3_MOUSE (e_value=4e-58) Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1;; (*TAIR) AT5G61140.2 (e_value=2e-76) | Symbols: | U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2157;; (*ITAG) Solyc06g069480.2.1 (e_value=5e-87) genomic_reference:SL2.40ch06 gene_region:39617598-39646906 transcript_region:SL2.40ch06:39617598..39646906+ go_terms:GO:0005515,GO:0004004 functional_description:"Related to ATP dependent RNA helicase (AHRD V1 **-* Q6MV07_NEUCR); contains Interpro domain(s) IPR004179 Sec63 domain "; GO:0005515,GO:0004004 NbS00027855g0004.1 protein NbS00016695g0006.1 protein NbS00016695g0007.1 protein NbS00002844g0205.1 protein NbS00027714g0002.1 protein NbS00030724g0004.1 protein ; (*GB) gi|110739414|dbj|BAF01617.1| (e_value=8e-16) hypothetical protein [Arabidopsis thaliana]; NbS00030724g0008.1 protein NbS00030724g0009.1 protein NbS00009962g0005.1 protein NbS00009962g0006.1 protein NbS00051277g0003.1 protein NbS00000010g0003.1 protein NbS00006102g0013.1 protein NbS00008055g0005.1 protein NbS00003226g0002.1 protein NbS00029233g0005.1 protein NbS00061681g0003.1 protein ; (*GB) gi|356532710|ref|XP_003534914.1| (e_value=2e-36) PREDICTED: beta-galactosidase 1-like [Glycine max];; (*SWP) sp|Q9SCV9|BGAL3_ARATH (e_value=2e-29) Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1;; (*TAIR) AT4G36360.1 (e_value=1e-30) | Symbols: BGAL3 | beta-galactosidase 3 | chr4:17176840-17181143 REVERSE LENGTH=856;; (*ITAG) Solyc04g080840.1.1 (e_value=2e-43) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:62509584-62513770 transcript_region:SL2.40ch04:62509584..62513770+ go_terms:GO:0005515 functional_description:"Beta-galactosidase (AHRD V1 ***- B9H4G6_POPTR); contains Interpro domain(s) IPR001944 Glycoside hydrolase, family 35 "; GO:0005515 NbS00033891g0004.1 protein NbS00033891g0006.1 protein NbS00016926g0002.1 protein NbS00016926g0004.1 protein ; (*GB) gi|323511860|gb|ADX87418.1| (e_value=9e-69) decreased size exclusion limit 1 [Nicotiana benthamiana];; (*TAIR) AT4G29860.1 (e_value=3e-25) | Symbols: EMB2757, TAN | Transducin/WD40 repeat-like superfamily protein | chr4:14603296-14605704 REVERSE LENGTH=386;; (*ITAG) Solyc11g010910.1.1 (e_value=4e-58) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3963140-3969591 transcript_region:SL2.40ch11:3963140..3969591- go_terms:GO:0000166 functional_description:"WD repeat protein (AHRD V1 ***- Q3MV14_ARATH); contains Interpro domain(s) IPR020472 G-protein beta WD-40 repeat, region "; GO:0000166 NbS00016926g0006.1 protein NbS00012422g0007.1 protein NbS00012422g0008.1 protein NbS00013375g0005.1 protein NbS00016078g0006.1 protein NbS00036282g0006.1 protein NbS00019183g0011.1 protein NbS00019183g0012.1 protein NbS00052619g0008.1 protein ; (*ITAG) Solyc05g010360.1.1 (e_value=2e-14) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:4507355-4508798 transcript_region:SL2.40ch05:4507355..4508798+ functional_description:"F-box family protein (AHRD V1 ***- D7KQH0_ARALY); contains Interpro domain(s) IPR001810 Cyclin-like F-box "; NbS00035059g0003.1 protein NbS00014112g0005.1 protein NbS00014908g0002.1 protein NbS00027434g0002.1 protein ; (*ITAG) Solyc02g068380.2.1 (e_value=3e-19) genomic_reference:SL2.40ch02 gene_region:32909088-32915018 transcript_region:SL2.40ch02:32909088..32915018- go_terms:GO:0008233,GO:0047652 functional_description:"N-carbamoyl-L-amino-acid amidohydrolase (AHRD V1 **-- Q1LHR1_RALME); contains Interpro domain(s) IPR010158 Amidase, hydantoinase/carbamoylase "; GO:0008233,GO:0047652 NbS00010040g0004.1 protein NbS00010040g0005.1 protein NbS00010040g0006.1 protein ; (*GB) gi|296081857|emb|CBI20862.3| (e_value=6e-32) unnamed protein product [Vitis vinifera];; (*ITAG) Solyc08g066770.2.1 (e_value=4e-36) genomic_reference:SL2.40ch08 gene_region:52808097-52813393 transcript_region:SL2.40ch08:52808097..52813393- go_terms:GO:0030506 functional_description:"Ankyrin repeat family protein (AHRD V1 **-* D7KKP5_ARALY); contains Interpro domain(s) IPR002110 Ankyrin "; GO:0030506 NbS00043565g0004.1 protein NbS00004844g0004.1 protein NbS00049386g0007.1 protein NbS00014151g0002.1 protein NbS00038354g0004.1 protein NbS00010554g0004.1 protein ; (*GB) gi|126669246|gb|ABA07806.2| (e_value=9e-26) cytochrome P450 monooxygenase CYP82E2 [Nicotiana tabacum];; (*ITAG) Solyc04g007940.2.1 (e_value=2e-18) genomic_reference:SL2.40ch04 gene_region:1587191-1589705 transcript_region:SL2.40ch04:1587191..1589705- go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00007723g0005.1 protein NbS00003666g0001.1 protein NbS00009362g0005.1 protein NbS00001130g0002.1 protein NbS00005679g0102.1 protein NbS00005679g0002.1 protein NbS00004781g0106.1 protein NbS00004781g0107.1 protein NbS00026799g0003.1 protein NbS00019198g0001.1 protein ; (*GB) gi|224112235|ref|XP_002316127.1| (e_value=2e-18) predicted protein [Populus trichocarpa];; (*TAIR) AT1G18720.1 (e_value=4e-19) | Symbols: | Protein of unknown function (DUF962) | chr1:6458020-6459658 REVERSE LENGTH=206;; (*ITAG) Solyc03g115860.2.1 (e_value=7e-26) genomic_reference:SL2.40ch03 gene_region:59514994-59518387 transcript_region:SL2.40ch03:59514994..59518387- go_terms:GO:0005515 functional_description:"Endoplasmic reticulum membrane protein YGL010W (AHRD V1 **-- C1BUF1_9MAXI); contains Interpro domain(s) IPR009305 Protein of unknown function DUF962 "; GO:0005515 NbS00028585g0004.1 protein ; (*GB) gi|149349541|gb|ABR24115.1| (e_value=9e-49) eugenol synthase 1 [Petunia x hybrida];; (*SWP) sp|P52578|IFRH_SOLTU (e_value=1e-42) Isoflavone reductase homolog OS=Solanum tuberosum PE=2 SV=1;; (*TAIR) AT1G75300.1 (e_value=2e-44) | Symbols: | NmrA-like negative transcriptional regulator family protein | chr1:28255552-28256927 FORWARD LENGTH=322;; (*ITAG) Solyc04g080550.2.1 (e_value=3e-47) genomic_reference:SL2.40ch04 gene_region:62277983-62280069 transcript_region:SL2.40ch04:62277983..62280069+ go_terms:GO:0016651,GO:0032442 functional_description:"Phenylcoumaran benzylic ether reductase (AHRD V1 **** B6VRE8_TOBAC); contains Interpro domain(s) IPR008030 NmrA-like "; GO:0016651,GO:0032442 NbS00009313g0002.1 protein ; (*GB) gi|359492504|ref|XP_002283760.2| (e_value=1e-102) PREDICTED: BEACH domain-containing protein lvsC-like, partial [Vitis vinifera];; (*SWP) sp|Q54U63|LVSC_DICDI (e_value=1e-26) BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2;; (*TAIR) AT1G58230.1 (e_value=2e-100) | Symbols: | binding | chr1:21566331-21578865 FORWARD LENGTH=2604;; (*ITAG) Solyc04g076510.2.1 (e_value=4e-117) genomic_reference:SL2.40ch04 gene_region:58981166-58993135 transcript_region:SL2.40ch04:58981166..58993135+ functional_description:"Beige/BEACH domain containing protein (AHRD V1 *--- A8PYX1_BRUMA); contains Interpro domain(s) IPR000409 Beige/BEACH "; NbS00009313g0003.1 protein NbS00018913g0001.1 protein NbS00018913g0106.1 protein NbS00018913g0109.1 protein NbS00017006g0002.1 protein NbS00008111g0002.1 protein NbS00008111g0004.1 protein NbS00004289g0001.1 protein NbS00011760g0003.1 protein ; (*GB) gi|75164734|sp|Q948T9.1|RBOHB_SOLTU (e_value=1e-61) RecName: Full=Respiratory burst oxidase homolog protein B; AltName: Full=NADPH oxidase RBOHB; AltName: Full=StRBOHB;; (*SWP) sp|Q948T9|RBOHB_SOLTU (e_value=4e-63) Respiratory burst oxidase homolog protein B OS=Solanum tuberosum GN=RBOHB PE=1 SV=1;; (*TAIR) AT1G09090.2 (e_value=2e-48) | Symbols: ATRBOHB, RBOHB | respiratory burst oxidase homolog B | chr1:2932743-2936495 FORWARD LENGTH=843;; (*ITAG) Solyc01g099620.2.1 (e_value=4e-64) genomic_reference:SL2.40ch01 gene_region:81563045-81567144 transcript_region:SL2.40ch01:81563045..81567144- go_terms:GO:0016174 functional_description:"Respiratory burst oxidase-like protein (AHRD V1 **** C1IHQ9_9ROSI); contains Interpro domain(s) IPR013121 Ferric reductase, NAD binding "; GO:0016174 NbS00035416g0003.1 protein ; (*GB) gi|359497037|ref|XP_002263775.2| (e_value=3e-48) PREDICTED: uncharacterized protein LOC100247282 [Vitis vinifera];; (*TAIR) AT1G79740.1 (e_value=1e-14) | Symbols: | hAT transposon superfamily | chr1:30004367-30006715 REVERSE LENGTH=651;; (*ITAG) Solyc08g007470.1.1 (e_value=1e-62) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch08 gene_region:2038691-2042536 transcript_region:SL2.40ch08:2038691..2042536+ go_terms:GO:0003677,GO:0046983 functional_description:"HAT dimerisation domain-containing protein-like (AHRD V1 ***- Q5NB62_ORYSJ); contains Interpro domain(s) IPR007021 Protein of unknown function DUF659 "; GO:0003677,GO:0046983 NbS00046561g0001.1 protein NbC26324866g0002.1 protein NbC26324866g0003.1 protein NbS00001942g0003.1 protein NbS00007397g0017.1 protein NbS00007397g0010.1 protein NbS00030900g0003.1 protein NbS00019507g0006.1 protein NbC24181946g0001.1 protein ; (*GB) gi|255544986|ref|XP_002513554.1| (e_value=4e-51) glutamate synthase, putative [Ricinus communis];; (*SWP) sp|Q9LV03|GLUT1_ARATH (e_value=1e-48) Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana GN=GLT1 PE=1 SV=2;; (*TAIR) AT5G53460.3 (e_value=9e-50) | Symbols: GLT1 | NADH-dependent glutamate synthase 1 | chr5:21700518-21709629 FORWARD LENGTH=2208;; (*ITAG) Solyc03g083440.2.1 (e_value=5e-57) genomic_reference:SL2.40ch03 gene_region:46882015-46893435 transcript_region:SL2.40ch03:46882015..46893435+ go_terms:GO:0005515,GO:0016040 functional_description:"Glutamate synthase (AHRD V1 **** C1E4G5_9CHLO); contains Interpro domain(s) IPR012220 Glutamate synthase, eukaryotic IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 "; GO:0005515,GO:0016040 NbS00035641g0001.1 protein ; (*GB) gi|147777218|emb|CAN63286.1| (e_value=8e-27) hypothetical protein VITISV_025194 [Vitis vinifera];; (*SWP) sp|Q700D9|MYBF_ARATH (e_value=6e-13) Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2;; (*TAIR) AT1G14600.1 (e_value=4e-14) | Symbols: | Homeodomain-like superfamily protein | chr1:5001185-5003370 REVERSE LENGTH=255;; (*ITAG) Solyc04g008480.1.1 (e_value=5e-40) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch04 gene_region:2095913-2099972 transcript_region:SL2.40ch04:2095913..2099972- go_terms:GO:0045449 functional_description:"Myb-like DNA-binding domain SHAQKYF class family protein expressed (AHRD V1 *--- Q10S98_ORYSJ); contains Interpro domain(s) IPR006447 Myb-like DNA-binding region, SHAQKYF class "; GO:0045449 NbS00043588g0006.1 protein NbS00038675g0003.1 protein NbS00002376g0003.1 protein ; (*GB) gi|4741991|gb|AAD28791.1|AF145593_1 (e_value=6e-16) calcium/calmodulin-dependent protein kinase [Nicotiana tabacum];; (*SWP) sp|Q6RET6|CCAMK_PEA (e_value=1e-13) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (Fragment) OS=Pisum sativum GN=SYM9 PE=1 SV=2;; (*ITAG) Solyc01g096820.2.1 (e_value=2e-16) genomic_reference:SL2.40ch01 gene_region:79577959-79582114 transcript_region:SL2.40ch01:79577959..79582114+ go_terms:GO:0006468,GO:0005509 functional_description:"Calcium-dependent protein kinase 1 (AHRD V1 ***- Q3YAS9_PETIN); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0006468,GO:0005509 NbS00002376g0110.1 protein NbS00002376g0207.1 protein NbS00002376g0209.1 protein NbS00002376g0210.1 protein NbS00001389g0004.1 protein NbS00006055g0009.1 protein NbS00029122g0005.1 protein ; (*GB) gi|225454502|ref|XP_002277075.1| (e_value=3e-40) PREDICTED: uncharacterized protein LOC100241322 [Vitis vinifera];; (*TAIR) AT3G61690.1 (e_value=1e-32) | Symbols: | nucleotidyltransferases | chr3:22828349-22833477 FORWARD LENGTH=1303;; (*ITAG) Solyc10g009490.1.1 (e_value=5e-44) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:3624898-3635076 transcript_region:SL2.40ch10:3624898..3635076- functional_description:"Os12g0114200 protein (Fragment) (AHRD V1 *--- Q0IQL4_ORYSJ)"; NbS00007335g0011.1 protein ; (*ITAG) Solyc05g018180.2.1 (e_value=6e-15) genomic_reference:SL2.40ch05 gene_region:20178597-20183914 transcript_region:SL2.40ch05:20178597..20183914- functional_description:"Homology to unknown gene (AHRD V1 *--- Q01GH9_OSTTA); contains Interpro domain(s) IPR008528 Protein of unknown function DUF810 "; NbS00007335g0013.1 protein NbS00007335g0005.1 protein NbS00007335g0010.1 protein NbS00007335g0107.1 protein NbS00007335g0108.1 protein NbS00005255g0012.1 protein NbS00050071g0004.1 protein NbS00013772g0008.1 protein NbS00022522g0005.1 protein NbS00006911g0008.1 protein NbS00058919g0005.1 protein NbS00001623g0013.1 protein ; (*GB) gi|255557845|ref|XP_002519952.1| (e_value=2e-15) conserved hypothetical protein [Ricinus communis];; (*ITAG) Solyc08g005560.2.1 (e_value=1e-25) genomic_reference:SL2.40ch08 gene_region:416228-420995 transcript_region:SL2.40ch08:416228..420995+ functional_description:"Binding protein (AHRD V1 ***- D7MGU4_ARALY)"; NbS00001623g0009.1 protein NbS00004121g0004.1 protein NbS00004121g0009.1 protein ; (*GB) gi|297828980|ref|XP_002882372.1| (e_value=1e-27) hypothetical protein ARALYDRAFT_477743 [Arabidopsis lyrata subsp. lyrata];; (*TAIR) AT3G04740.1 (e_value=9e-29) | Symbols: SWP, MED14, ATMED14 | RNA polymerase II transcription mediators | chr3:1294037-1300555 FORWARD LENGTH=1703;; (*ITAG) Solyc01g097320.2.1 (e_value=1e-36) genomic_reference:SL2.40ch01 gene_region:79970785-79983599 transcript_region:SL2.40ch01:79970785..79983599- go_terms:GO:0016592 functional_description:"Mediator of RNA polymerase II transcription subunit 14 (Predicted) (AHRD V1 *-*- B4USR1_OTOGA); contains Interpro domain(s) IPR013947 Mediator complex, subunit Med14 "; GO:0016592 NbS00026015g0006.1 protein NbS00026015g0008.1 protein NbS00005145g0005.1 protein NbS00007803g0007.1 protein NbS00007803g0009.1 protein NbS00005671g0004.1 protein NbS00025661g0002.1 protein NbS00017194g0001.1 protein NbS00028829g0004.1 protein NbS00002782g0002.1 protein NbS00031696g0004.1 protein NbS00031696g0005.1 protein NbS00031696g0008.1 protein NbS00025940g0002.1 protein NbS00007489g0002.1 protein NbS00024490g0006.1 protein NbS00009517g0003.1 protein NbS00030796g0003.1 protein NbS00036417g0001.1 protein ; (*ITAG) Solyc03g112720.2.1 (e_value=1e-18) genomic_reference:SL2.40ch03 gene_region:57120139-57122993 transcript_region:SL2.40ch03:57120139..57122993+ go_terms:GO:0043687 functional_description:"Ubiquitin-conjugating enzyme E2 I (AHRD V1 ***- B6U359_MAIZE); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "; GO:0043687 NbS00019477g0005.1 protein NbS00019477g0008.1 protein ; (*GB) gi|255590096|ref|XP_002535170.1| (e_value=7e-34) conserved hypothetical protein [Ricinus communis]; NbS00019477g0009.1 protein NbS00001670g0008.1 protein ; (*ITAG) Solyc11g017110.1.1 (e_value=2e-29) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch11 gene_region:7906484-7906906 transcript_region:SL2.40ch11:7906484..7906906+ functional_description:"Unknown Protein (AHRD V1)"; NbS00041459g0011.1 protein ; (*GB) gi|113205274|gb|ABI34321.1| (e_value=7e-15) RNase H family protein [Solanum demissum];; (*ITAG) Solyc01g057740.1.1 (e_value=5e-16) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch01 gene_region:56450252-56451100 transcript_region:SL2.40ch01:56450252..56451100- functional_description:"RNase H family protein (AHRD V1 ***- Q0KIQ6_SOLDE)"; NbS00041459g0007.1 protein NbS00041459g0009.1 protein NbS00041459g0010.1 protein NbS00053075g0003.1 protein NbS00049444g0004.1 protein NbS00060459g0002.1 protein NbS00022502g0004.1 protein NbS00022502g0007.1 protein NbS00008434g0008.1 protein ; (*ITAG) Solyc10g086370.1.1 (e_value=1e-12) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch10 gene_region:64543250-64544782 transcript_region:SL2.40ch10:64543250..64544782+ functional_description:"GAI-like protein 1 (Fragment) (AHRD V1 ***- A1YWN9_9ROSI); contains Interpro domain(s) IPR005202 GRAS transcription factor "; NbS00039581g0002.1 protein NbS00011016g0006.1 protein ; (*GB) gi|356572190|ref|XP_003554253.1| (e_value=1e-18) PREDICTED: LOW QUALITY PROTEIN: patatin group A-3-like [Glycine max];; (*TAIR) AT3G63200.1 (e_value=9e-17) | Symbols: PLP9, PLA IIIB | PATATIN-like protein 9 | chr3:23346140-23347379 FORWARD LENGTH=384;; (*ITAG) Solyc09g065240.2.1 (e_value=4e-23) genomic_reference:SL2.40ch09 gene_region:58895801-58897766 transcript_region:SL2.40ch09:58895801..58897766- go_terms:GO:0045735 functional_description:"Patatin-like protein 3 (AHRD V1 ***- B6TPQ5_MAIZE); contains Interpro domain(s) IPR002641 Patatin "; GO:0045735 NbS00056941g0003.1 protein ; (*GB) gi|225442928|ref|XP_002265258.1| (e_value=7e-74) PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like [Vitis vinifera];; (*SWP) sp|Q9FK93|PP406_ARATH (e_value=3e-63) Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1;; (*TAIR) AT5G39680.1 (e_value=2e-64) | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:15884236-15886368 REVERSE LENGTH=710;; (*ITAG) Solyc11g065250.1.1 (e_value=5e-104) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:47710375-47712495 transcript_region:SL2.40ch11:47710375..47712495+ go_terms:GO:0004519,GO:0034046 functional_description:"Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M989_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat "; GO:0004519,GO:0034046 NbS00004101g0007.1 protein NbS00003530g0012.1 protein NbS00021437g0001.1 protein NbS00019787g0001.1 protein NbS00003802g0001.1 protein NbS00010365g0003.1 protein ; (*ITAG) Solyc05g039970.1.1 (e_value=1e-19) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch05 gene_region:47674669-47675289 transcript_region:SL2.40ch05:47674669..47675289- go_terms:GO:0003676,GO:0004523 functional_description:"Ribonuclease H (AHRD V1 ***- Q2HU20_MEDTR); contains Interpro domain(s) IPR002156 Ribonuclease H "; GO:0003676,GO:0004523 NbS00010365g0005.1 protein NbS00010365g0006.1 protein NbS00006380g0003.1 protein NbS00006380g0004.1 protein NbS00018477g0017.1 protein NbS00021356g0001.1 protein NbS00032185g0008.1 protein NbS00005345g0114.1 protein NbS00005345g0108.1 protein NbS00005345g0109.1 protein NbS00012529g0004.1 protein NbS00013424g0005.1 protein ; (*GB) gi|297802890|ref|XP_002869329.1| (e_value=1e-22) ABC1 family protein [Arabidopsis lyrata subsp. lyrata];; (*SWP) sp|Q8RWG1|Y4139_ARATH (e_value=7e-23) Uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1 SV=1;; (*TAIR) AT4G31390.2 (e_value=5e-24) | Symbols: | Protein kinase superfamily protein | chr4:15233126-15236764 FORWARD LENGTH=657;; (*ITAG) Solyc08g074560.2.1 (e_value=6e-25) genomic_reference:SL2.40ch08 gene_region:55830317-55845022 transcript_region:SL2.40ch08:55830317..55845022- go_terms:GO:0016709 functional_description:"Uncharacterized aarF domain-containing protein kinase 1 (AHRD V1 *--- ADCK1_CHICK); contains Interpro domain(s) IPR004147 ABC-1 "; GO:0016709 NbS00013424g0006.1 protein NbS00013424g0008.1 protein NbS00026999g0003.1 protein NbS00041580g0006.1 protein NbS00008416g0004.1 protein NbS00002875g0002.1 protein NbS00016705g0002.1 protein NbC24614776g0001.1 protein ; (*GB) gi|71727712|gb|AAZ39949.1| (e_value=3e-18) serine/threonine protein kinase [Gossypium hirsutum];; (*TAIR) AT5G08160.2 (e_value=4e-19) | Symbols: ATPK3, PK3 | serine/threonine protein kinase 3 | chr5:2625903-2627942 REVERSE LENGTH=311;; (*ITAG) Solyc03g114590.2.1 (e_value=2e-19) genomic_reference:SL2.40ch03 gene_region:58588643-58592578 transcript_region:SL2.40ch03:58588643..58592578+ go_terms:GO:0004674 functional_description:"Serine/threonine protein kinase (AHRD V1 **** Q8L9Q3_ARATH); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "; GO:0004674 NbS00016227g0002.1 protein NbS00016227g0003.1 protein ; (*GB) gi|356559021|ref|XP_003547800.1| (e_value=7e-15) PREDICTED: nucleolysin TIAR-like [Glycine max];; (*TAIR) AT1G17370.2 (e_value=2e-11) | Symbols: UBP1B | oligouridylate binding protein 1B | chr1:5951842-5954825 REVERSE LENGTH=416;; (*ITAG) Solyc06g063000.2.1 (e_value=1e-16) genomic_reference:SL2.40ch06 gene_region:36157647-36163138 transcript_region:SL2.40ch06:36157647..36163138+ go_terms:GO:0005515 functional_description:"Polyadenylate-binding protein (AHRD V1 **** A8N215_COPC7); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0005515 NbS00030669g0001.1 protein NbS00024331g0002.1 protein NbS00047441g0004.1 protein NbS00009650g0009.1 protein NbS00001469g0013.1 protein NbS00001469g0015.1 protein NbS00001469g0016.1 protein NbS00001469g0007.1 protein NbS00001469g0008.1 protein ; (*ITAG) Solyc08g045870.2.1 (e_value=7e-35) genomic_reference:SL2.40ch08 gene_region:37105614-37106496 transcript_region:SL2.40ch08:37105614..37106496- go_terms:GO:0005840 functional_description:"Ribosomal protein S3 (Fragment) (AHRD V1 *-*- O99879_SOLTU); contains Interpro domain(s) IPR001351 Ribosomal protein S3, C-terminal "; GO:0005840 NbS00001469g0010.1 protein NbS00039444g0001.1 protein NbS00039444g0002.1 protein NbS00056461g0005.1 protein ; (*ITAG) Solyc09g064920.2.1 (e_value=1e-25) genomic_reference:SL2.40ch09 gene_region:58041266-58046595 transcript_region:SL2.40ch09:58041266..58046595- go_terms:GO:0005634,GO:0045449 functional_description:"BHLH transcription factor (AHRD V1 *-*- B6U846_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding "; GO:0005634,GO:0045449 NbS00056461g0007.1 protein NbS00030134g0007.1 protein ; (*ITAG) Solyc08g075940.2.1 (e_value=2e-15) genomic_reference:SL2.40ch08 gene_region:57177561-57187966 transcript_region:SL2.40ch08:57177561..57187966- go_terms:GO:0005515 functional_description:"DNA-directed RNA polymerase (AHRD V1 ***- B9IL57_POPTR); contains Interpro domain(s) IPR015712 DNA-directed RNA polymerase, subunit 2 "; GO:0005515 NbS00030134g0010.1 protein NbC25209911g0001.1 protein ; (*GB) gi|224145336|ref|XP_002325606.1| (e_value=1e-20) predicted protein [Populus trichocarpa];; (*SWP) sp|Q5H8A6|CASTO_LOTJA (e_value=1e-21) Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1;; (*TAIR) AT5G49960.1 (e_value=3e-17) | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20324173-20327687 REVERSE LENGTH=824;; (*ITAG) Solyc03g059150.2.1 (e_value=1e-23) genomic_reference:SL2.40ch03 gene_region:25210154-25212182 transcript_region:SL2.40ch03:25210154..25212182+ functional_description:"DMI1 protein (Fragment) (AHRD V1 ***- A9DNT9_MEDTR)"; NbS00039951g0005.1 protein ; (*GB) gi|255562062|ref|XP_002522039.1| (e_value=7e-73) proline iminopeptidase, putative [Ricinus communis];; (*SWP) sp|P93732|PIP_ARATH (e_value=4e-66) Proline iminopeptidase OS=Arabidopsis thaliana GN=PIP PE=2 SV=3;; (*TAIR) AT2G14260.2 (e_value=5e-68) | Symbols: PIP | proline iminopeptidase | chr2:6041441-6043475 REVERSE LENGTH=329;; (*ITAG) Solyc11g044310.1.1 (e_value=6e-81) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35368977-35379803 transcript_region:SL2.40ch11:35368977..35379803+ go_terms:GO:0006508,GO:0005737 functional_description:"Proline iminopeptidase (AHRD V1 ***- B9S7S3_RICCO); contains Interpro domain(s) IPR005944 Peptidase S33, proline iminopeptidase 1 "; GO:0006508,GO:0005737 NbS00039951g0006.1 protein NbS00039951g0010.1 protein ; (*GB) gi|359475506|ref|XP_002271289.2| (e_value=2e-93) PREDICTED: proline iminopeptidase [Vitis vinifera];; (*SWP) sp|P93732|PIP_ARATH (e_value=1e-85) Proline iminopeptidase OS=Arabidopsis thaliana GN=PIP PE=2 SV=3;; (*TAIR) AT2G14260.1 (e_value=9e-87) | Symbols: PIP | proline iminopeptidase | chr2:6041441-6043869 REVERSE LENGTH=380;; (*ITAG) Solyc11g044310.1.1 (e_value=5e-112) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:35368977-35379803 transcript_region:SL2.40ch11:35368977..35379803+ go_terms:GO:0006508,GO:0005737 functional_description:"Proline iminopeptidase (AHRD V1 ***- B9S7S3_RICCO); contains Interpro domain(s) IPR005944 Peptidase S33, proline iminopeptidase 1 "; GO:0006508,GO:0005737 NbS00024746g0003.1 protein ; (*GB) gi|225435307|ref|XP_002285127.1| (e_value=6e-24) PREDICTED: ruvB-like 1-like [Vitis vinifera];; (*SWP) sp|Q5BBV9|RUVB1_EMENI (e_value=4e-24) RuvB-like helicase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rvb1 PE=3 SV=3;; (*TAIR) AT5G22330.1 (e_value=4e-26) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458;; (*ITAG) Solyc06g062350.2.1 (e_value=1e-26) genomic_reference:SL2.40ch06 gene_region:35707819-35712564 transcript_region:SL2.40ch06:35707819..35712564- go_terms:GO:0043140 functional_description:"Holliday junction ATP-dependent DNA helicase ruvB (AHRD V1 **** D0N0A1_PHYIN); contains Interpro domain(s) IPR010339 TIP49, C-terminal "; GO:0043140 NbS00002558g0003.1 protein NbS00002558g0005.1 protein NbS00015385g0014.1 protein ; (*GB) gi|332322090|emb|CCA65981.1| (e_value=1e-11) hypothetical protein [Beta vulgaris subsp. vulgaris];; (*ITAG) Solyc00g012310.1.1 (e_value=3e-12) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch00 gene_region:10454496-10455623 transcript_region:SL2.40ch00:10454496..10455623- go_terms:GO:0006278 functional_description:"Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) (AHRD V1 **-- PO21_NASVI); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related "; GO:0006278 NbS00005010g0007.1 protein NbS00007805g0014.1 protein NbS00015441g0006.1 protein NbS00043696g0002.1 protein ; (*GB) gi|225444686|ref|XP_002277641.1| (e_value=9e-17) PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 [Vitis vinifera];; (*TAIR) AT1G19110.1 (e_value=5e-18) | Symbols: | inter-alpha-trypsin inhibitor heavy chain-related | chr1:6602270-6605766 FORWARD LENGTH=754;; (*ITAG) Solyc07g042080.2.1 (e_value=4e-22) genomic_reference:SL2.40ch07 gene_region:52332572-52342131 transcript_region:SL2.40ch07:52332572..52342131+ functional_description:"Inter-alpha-trypsin inhibitor domain protein (AHRD V1 *-*- Q1YZ74_PHOPR); contains Interpro domain(s) IPR002035 von Willebrand factor, type A "; NbS00014369g0003.1 protein NbS00016869g0002.1 protein NbS00048568g0007.1 protein ; (*GB) gi|388498352|gb|AFK37242.1| (e_value=6e-23) unknown [Medicago truncatula];; (*TAIR) AT1G01230.1 (e_value=4e-24) | Symbols: | ORMDL family protein | chr1:97620-99046 FORWARD LENGTH=157;; (*ITAG) Solyc01g096130.2.1 (e_value=1e-24) genomic_reference:SL2.40ch01 gene_region:78999740-79005183 transcript_region:SL2.40ch01:78999740..79005183- go_terms:GO:0042802 functional_description:"ORM1-like protein 2 (AHRD V1 ***- B4FEN2_MAIZE); contains Interpro domain(s) IPR007203 ORMDL "; GO:0042802 NbS00040381g0005.1 protein NbS00040381g0007.1 protein NbS00018207g0004.1 protein NbS00033553g0004.1 protein NbS00003871g0002.1 protein NbS00003871g0006.1 protein NbS00043338g0002.1 protein NbS00053038g0004.1 protein NbS00053038g0005.1 protein ; (*GB) gi|225444607|ref|XP_002277404.1| (e_value=4e-48) PREDICTED: polyphosphoinositide phosphatase [Vitis vinifera];; (*TAIR) AT5G20840.1 (e_value=5e-15) | Symbols: | Phosphoinositide phosphatase family protein | chr5:7061638-7068572 REVERSE LENGTH=831;; (*ITAG) Solyc07g017430.2.1 (e_value=7e-107) genomic_reference:SL2.40ch07 gene_region:6923243-6960956 transcript_region:SL2.40ch07:6923243..6960956- go_terms:GO:0005515 functional_description:"Polyphosphoinositide phosphatase (AHRD V1 ***- B2WG36_PYRTR); contains Interpro domain(s) IPR002013 Synaptojanin, N-terminal "; GO:0005515 NbS00016203g0004.1 protein NbS00001556g0203.1 protein NbS00040830g0001.1 protein NbS00036362g0011.1 protein NbS00036362g0019.1 protein NbS00001576g0013.1 protein NbS00022645g0005.1 protein NbS00003367g0003.1 protein NbC23917119g0001.1 protein ; (*GB) gi|115482210|ref|NP_001064698.1| (e_value=3e-39) Os10g0442600 [Oryza sativa Japonica Group];; (*SWP) sp|Q9SCN8|CD48D_ARATH (e_value=5e-36) Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1;; (*TAIR) AT3G53230.1 (e_value=4e-37) | Symbols: | ATPase, AAA-type, CDC48 protein | chr3:19723416-19726489 FORWARD LENGTH=815;; (*ITAG) Solyc03g112590.2.1 (e_value=5e-40) genomic_reference:SL2.40ch03 gene_region:57029718-57040222 transcript_region:SL2.40ch03:57029718..57040222- go_terms:GO:0004176 functional_description:"Cell division protease ftsH homolog (AHRD V1 *--- FTSH_ODOSI); contains Interpro domain(s) IPR005938 ATPase, AAA-type, CDC48 "; GO:0004176 NbS00025331g0002.1 protein NbS00000484g0002.1 protein ; (*ITAG) Solyc04g008130.1.1 (e_value=5e-13) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch04 gene_region:1811153-1814408 transcript_region:SL2.40ch04:1811153..1814408- go_terms:GO:0006952,GO:0006915 functional_description:"Cc-nbs-lrr, resistance protein"; GO:0006952,GO:0006915 NbS00008502g0006.1 protein NbS00008502g0009.1 protein NbS00046731g0005.1 protein NbS00033823g0002.1 protein NbS00035325g0004.1 protein NbS00035325g0007.1 protein NbS00000321g0013.1 protein NbS00000321g0009.1 protein NbS00016139g0003.1 protein NbS00025119g0004.1 protein NbS00025119g0009.1 protein NbS00001096g0106.1 protein NbS00001096g0108.1 protein NbS00027230g0007.1 protein ; (*GB) gi|224080021|ref|XP_002305994.1| (e_value=1e-23) predicted protein [Populus trichocarpa];; (*TAIR) AT5G40340.1 (e_value=3e-14) | Symbols: | Tudor/PWWP/MBT superfamily protein | chr5:16131654-16134680 REVERSE LENGTH=1008;; (*ITAG) Solyc02g086750.1.1 (e_value=1e-48) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:43944874-43947381 transcript_region:SL2.40ch02:43944874..43947381+ functional_description:"PWWP domain-containing protein (AHRD V1 *-*- D7L8B3_ARALY); contains Interpro domain(s) IPR000313 PWWP "; NbS00011590g0005.1 protein NbS00007480g0003.1 protein NbS00061164g0001.1 protein NbS00023808g0102.1 protein NbS00001362g0010.1 protein NbS00001442g0003.1 protein ; (*GB) gi|6226239|sp|O24381.2|TLC1_SOLTU (e_value=2e-14) RecName: Full=Plastidic ATP/ADP-transporter;; (*SWP) sp|O24381|TLC1_SOLTU (e_value=5e-16) Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2;; (*TAIR) AT1G15500.1 (e_value=2e-13) | Symbols: ATNTT2 | TLC ATP/ADP transporter | chr1:5326426-5328688 FORWARD LENGTH=618;; (*ITAG) Solyc12g042950.1.1 (e_value=3e-17) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:43908614-43911733 transcript_region:SL2.40ch12:43908614..43911733+ go_terms:GO:0005515 functional_description:"ADP/ATP carrier protein (AHRD V1 ***- Q5L657_CHLAB); contains Interpro domain(s) IPR004667 ADP/ATP carrier protein "; GO:0005515 NbS00003626g0001.1 protein NbS00005868g0004.1 protein NbS00036166g0004.1 protein NbS00001162g0013.1 protein NbS00001162g0007.1 protein NbS00001162g0008.1 protein NbS00046013g0005.1 protein NbS00046013g0006.1 protein NbS00046013g0007.1 protein NbS00028622g0007.1 protein NbS00034311g0002.1 protein ; (*GB) gi|329025170|gb|AEB71568.1| (e_value=7e-75) SNAP33 [Solanum chacoense];; (*SWP) sp|Q9S7P9|SNP33_ARATH (e_value=1e-42) SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1;; (*TAIR) AT5G61210.1 (e_value=9e-44) | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble N-ethylmaleimide-sensitive factor adaptor protein 33 | chr5:24624027-24625366 FORWARD LENGTH=300;; (*ITAG) Solyc03g115470.2.1 (e_value=9e-72) genomic_reference:SL2.40ch03 gene_region:59218266-59222031 transcript_region:SL2.40ch03:59218266..59222031+ go_terms:GO:0005484 functional_description:"Synaptosomal-associated protein 33 (AHRD V1 ***- D7MUI6_ARALY); contains Interpro domain(s) IPR000727 Target SNARE coiled-coil region "; GO:0005484 NbS00044521g0005.1 protein NbS00030895g0001.1 protein NbS00005890g0003.1 protein ; (*GB) gi|356539036|ref|XP_003538006.1| (e_value=2e-32) PREDICTED: RNA and export factor-binding protein 2-like [Glycine max];; (*SWP) sp|Q9JJW6|REFP2_MOUSE (e_value=7e-25) RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1;; (*TAIR) AT5G02530.2 (e_value=3e-32) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:564332-565776 REVERSE LENGTH=290;; (*ITAG) Solyc11g073280.1.1 (e_value=5e-35) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:53371249-53374473 transcript_region:SL2.40ch11:53371249..53374473+ go_terms:GO:0003676,GO:0000166 functional_description:"RNA binding protein (AHRD V1 *--- C1N7F4_MICPS); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "; GO:0003676,GO:0000166 NbS00005890g0006.1 protein NbS00005890g0007.1 protein ; (*GB) gi|224111730|ref|XP_002315956.1| (e_value=2e-27) predicted protein [Populus trichocarpa];; (*TAIR) AT1G25540.2 (e_value=2e-27) | Symbols: PFT1 | phytochrome and flowering time regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE LENGTH=727;; (*ITAG) Solyc12g070100.1.1 (e_value=9e-29) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:54648529-54669876 transcript_region:SL2.40ch12:54648529..54669876- go_terms:GO:0003713 functional_description:"Mediator of RNA polymerase II transcription subunit 25 (AHRD V1 *-** MED25_XENTR)"; GO:0003713 NbS00005890g0008.1 protein NbS00005890g0107.1 protein NbS00003082g0002.1 protein NbS00003082g0004.1 protein NbS00008570g0014.1 protein NbS00008570g0015.1 protein NbS00008570g0007.1 protein NbS00008570g0008.1 protein ; (*GB) gi|224063369|ref|XP_002301115.1| (e_value=2e-12) predicted protein [Populus trichocarpa];; (*TAIR) AT4G38030.1 (e_value=5e-14) | Symbols: | Rhamnogalacturonate lyase family protein | chr4:17863206-17866730 REVERSE LENGTH=667;; (*ITAG) Solyc05g051350.1.1 (e_value=8e-27) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch05 gene_region:60767923-60775819 transcript_region:SL2.40ch05:60767923..60775819+ go_terms:GO:0016829 functional_description:"Rhamnogalacturonate lyase (AHRD V1 **** A3XLZ2_LEEBM); contains Interpro domain(s) IPR010325 Rhamnogalacturonate lyase "; GO:0016829 NbS00008570g0009.1 protein NbS00008570g0010.1 protein NbS00016848g0007.1 protein NbS00016848g0008.1 protein NbS00004242g0007.1 protein NbC23664894g0001.1 protein ; (*GB) gi|147810884|emb|CAN67279.1| (e_value=9e-34) hypothetical protein VITISV_022021 [Vitis vinifera];; (*TAIR) AT3G47700.1 (e_value=3e-32) | Symbols: MAG2 | RINT-1 / TIP-1 family | chr3:17583773-17586578 REVERSE LENGTH=795;; (*ITAG) Solyc03g113000.2.1 (e_value=4e-39) genomic_reference:SL2.40ch03 gene_region:57356347-57363214 transcript_region:SL2.40ch03:57356347..57363214- go_terms:GO:0006810 functional_description:"Chromosome structural maintenance protein-like (AHRD V1 **-- Q6YUW7_ORYSJ); contains Interpro domain(s) IPR007528 RINT-1/TIP-1 "; GO:0006810 NbS00011253g0002.1 protein NbS00011253g0004.1 protein NbS00024123g0004.1 protein NbS00005477g0107.1 protein NbS00019642g0004.1 protein NbS00003635g0002.1 protein NbS00001327g0006.1 protein NbS00009142g0008.1 protein NbS00006671g0003.1 protein NbS00019863g0003.1 protein ; (*GB) gi|308080348|ref|NP_001183652.1| (e_value=5e-33) uncharacterized protein LOC100502246 [Zea mays];; (*SWP) sp|Q6ZK48|SLU7_ORYSJ (e_value=1e-30) Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1;; (*TAIR) AT4G37120.1 (e_value=8e-29) | Symbols: SMP2 | Pre-mRNA splicing Prp18-interacting factor | chr4:17486679-17489123 FORWARD LENGTH=536;; (*ITAG) Solyc09g072570.2.1 (e_value=1e-32) genomic_reference:SL2.40ch09 gene_region:60600116-60606656 transcript_region:SL2.40ch09:60600116..60606656- go_terms:GO:0003727 functional_description:"Pre-mRNA-splicing factor SLU7-A (AHRD V1 ***- D7KSF4_ARALY)"; GO:0003727 NbS00018677g0016.1 protein NbS00018677g0018.1 protein NbS00018677g0010.1 protein ; (*GB) gi|377807000|ref|YP_005090430.1| (e_value=2e-18) nad7 gene product (mitochondrion) [Boea hygrometrica];; (*SWP) sp|Q36450|NDUS2_NICSY (e_value=7e-20) NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1;; (*ITAG) ATMG00510.1 (e_value=4e-20) | Symbols: NAD7 | NADH dehydrogenase subunit 7 | chrM:132071-138153 FORWARD LENGTH=394;; (*ITAG) Solyc00g014830.2.1 (e_value=6e-21) genomic_reference:SL2.40ch00 gene_region:11067021-11072504 transcript_region:SL2.40ch00:11067021..11072504- go_terms:GO:0055114 functional_description:"NADH-quinone oxidoreductase subunit D (AHRD V1 ***- C4YU74_9RICK); contains Interpro domain(s) IPR010219 NADH dehydrogenase I, D subunit "; GO:0055114 NbS00028490g0003.1 protein NbS00009460g0003.1 protein NbS00009460g0101.1 protein NbS00029891g0001.1 protein NbS00047954g0004.1 protein NbS00000201g0005.1 protein NbS00048711g0005.1 protein NbS00002323g0003.1 protein ; (*GB) gi|85068658|gb|ABC69409.1| (e_value=1e-13) CYP71AT2v2 [Nicotiana tabacum];; (*ITAG) Solyc09g092600.2.1 (e_value=2e-26) genomic_reference:SL2.40ch09 gene_region:66968741-66970627 transcript_region:SL2.40ch09:66968741..66970627+ go_terms:GO:0019825 functional_description:"Cytochrome P450"; GO:0019825 NbS00002323g0004.1 protein NbS00002323g0005.1 protein ; (*ITAG) Solyc06g065870.2.1 (e_value=5e-22) genomic_reference:SL2.40ch06 gene_region:37680875-37682988 transcript_region:SL2.40ch06:37680875..37682988+ functional_description:"Unknown Protein (AHRD V1)"; NbS00030349g0006.1 protein NbS00030349g0007.1 protein ; (*GB) gi|255581111|ref|XP_002531370.1| (e_value=2e-21) conserved hypothetical protein [Ricinus communis];; (*TAIR) AT2G28780.1 (e_value=5e-14) | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr2:12340099-12343281 REVERSE LENGTH=796;; (*ITAG) Solyc06g075970.2.1 (e_value=9e-31) genomic_reference:SL2.40ch06 gene_region:43547530-43550801 transcript_region:SL2.40ch06:43547530..43550801- functional_description:"Unknown Protein (AHRD V1)"; NbS00029923g0001.1 protein ; (*GB) gi|225440394|ref|XP_002270859.1| (e_value=3e-21) PREDICTED: probable WRKY transcription factor 49 [Vitis vinifera];; (*ITAG) Solyc09g010960.2.1 (e_value=2e-34) genomic_reference:SL2.40ch09 gene_region:4315614-4317328 transcript_region:SL2.40ch09:4315614..4317328- go_terms:GO:0045449 functional_description:"WRKY transcription factor 17 (AHRD V1 *-*- Q7E0X2_ORYSJ); contains Interpro domain(s) IPR003657 DNA-binding WRKY "; GO:0045449 NbS00010975g0006.1 protein NbS00028631g0004.1 protein ; (*GB) gi|356551253|ref|XP_003543991.1| (e_value=1e-13) PREDICTED: uncharacterized protein LOC100811508 [Glycine max];; (*ITAG) Solyc12g038770.1.1 (e_value=2e-12) evidence_code:10F0H0E0IEG genomic_reference:SL2.40ch12 gene_region:36350447-36351295 transcript_region:SL2.40ch12:36350447..36351295- functional_description:"N-6 Adenine-specific DNA methylase (AHRD V1 *-*- Q1STQ1_MEDTR)"; NbS00014115g0002.1 protein NbS00027524g0006.1 protein NP_054477.1 photosystem II protein D1 [Nicotiana tabacum plastid] NP_054478.1 maturase K [Nicotiana tabacum plastid] NP_054479.1 ribosomal protein S16 [Nicotiana tabacum plastid] NP_054480.1 photosystem II protein K [Nicotiana tabacum plastid] NP_054483.1 ATP synthase CF0 C subunit [Nicotiana tabacum plastid] NP_054484.1 ATP synthase CF0 A subunit [Nicotiana tabacum plastid] NP_054485.1 ribosomal protein S2 [Nicotiana tabacum plastid] NP_054487.1 RNA polymerase beta' subunit [Nicotiana tabacum plastid] NP_054488.1 RNA polymerase beta subunit [Nicotiana tabacum plastid] NP_054489.1 cytochrome b6/f complex subunit VIII [Nicotiana tabacum plastid] NP_054490.1 photosystem II protein M [Nicotiana tabacum plastid] NP_054491.1 photosystem II protein D2 [Nicotiana tabacum plastid] NP_054493.1 hypothetical protein NitaCp017 [Nicotiana tabacum plastid] NP_054494.1 photosystem II protein Z [Nicotiana tabacum plastid] NP_054495.1 ribosomal protein S14 [Nicotiana tabacum plastid] NP_054496.1 photosystem I P700 chlorophyll a apoprotein A2 [Nicotiana tabacum plastid] NP_054498.1 photosystem I assembly protein Ycf3 [Nicotiana tabacum plastid] NP_054499.1 hypothetical protein NitaCp023 [Nicotiana tabacum plastid] NP_054500.1 ribosomal protein S4 [Nicotiana tabacum plastid] NP_054501.1 hypothetical protein NitaCp025 [Nicotiana tabacum plastid] NP_054502.1 NADH dehydrogenase subunit J [Nicotiana tabacum plastid] NP_054504.1 NADH dehydrogenase subunit 3 [Nicotiana tabacum plastid] NP_054505.1 ATP synthase CF1 epsilon subunit [Nicotiana tabacum plastid] NP_054507.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Nicotiana tabacum plastid] NP_054508.1 acetyl-CoA carboxylase beta subunit [Nicotiana tabacum plastid] NP_054509.1 photosystem I subunit VIII [Nicotiana tabacum plastid] NP_054510.1 photosystem I assembly protein Ycf4 [Nicotiana tabacum plastid] NP_054511.1 envelope membrane protein [Nicotiana tabacum plastid] NP_054512.1 cytochrome f [Nicotiana tabacum plastid] NP_054513.1 hypothetical protein NitaCp037 [Nicotiana tabacum plastid] NP_054514.1 photosystem II protein J [Nicotiana tabacum plastid] NP_054516.1 photosystem II protein VI [Nicotiana tabacum plastid] NP_054517.1 photosystem II protein V [Nicotiana tabacum plastid] NP_054518.1 hypothetical protein NitaCp042 [Nicotiana tabacum plastid] NP_054519.1 cytochrome b6/f complex subunit VI [Nicotiana tabacum plastid] NP_054520.1 cytochrome b6/f complex subunit V [Nicotiana tabacum plastid] NP_054521.1 photosystem I subunit IX [Nicotiana tabacum plastid] NP_054522.1 ribosomal protein L33 [Nicotiana tabacum plastid] NP_054523.1 ribosomal protein S18 [Nicotiana tabacum plastid] NP_054524.1 ribosomal protein L20 [Nicotiana tabacum plastid] NP_054525.1 ATP-dependent Clp protease proteolytic subunit [Nicotiana tabacum plastid] NP_054526.1 photosystem II 47 kDa protein [Nicotiana tabacum plastid] NP_054527.1 photosystem II protein T [Nicotiana tabacum plastid] NP_054528.1 photosystem II protein N [Nicotiana tabacum plastid] NP_054529.1 photosystem II protein H [Nicotiana tabacum plastid] NP_054530.1 cytochrome b6 [Nicotiana tabacum plastid] NP_054531.1 cytochrome b6/f complex subunit IV [Nicotiana tabacum plastid] NP_054532.1 RNA polymerase alpha subunit [Nicotiana tabacum plastid] NP_054533.1 ribosomal protein S11 [Nicotiana tabacum plastid] NP_054534.1 ribosomal protein S8 [Nicotiana tabacum plastid] NP_054536.1 ribosomal protein L16 [Nicotiana tabacum plastid] NP_054537.1 ribosomal protein S3 [Nicotiana tabacum plastid] NP_054538.1 ribosomal protein L22 [Nicotiana tabacum plastid] NP_054539.1 ribosomal protein S19 [Nicotiana tabacum plastid] NP_054540.1 ribosomal protein L2 [Nicotiana tabacum plastid] NP_054541.1 ribosomal protein L23 [Nicotiana tabacum plastid] NP_054542.1 Ycf2 [Nicotiana tabacum plastid] NP_054546.1 hypothetical protein NitaCp072 [Nicotiana tabacum plastid] NP_054547.1 NADH dehydrogenase subunit 2 [Nicotiana tabacum plastid] NP_054548.1 ribosomal protein S7 [Nicotiana tabacum plastid] NP_054551.1 hypothetical protein NitaCp077 [Nicotiana tabacum plastid] NP_054550.1 hypothetical protein NitaCp076 [Nicotiana tabacum plastid] NP_054552.1 hypothetical protein NitaCp078 [Nicotiana tabacum plastid] NP_054553.1 hypothetical protein NitaCp079 [Nicotiana tabacum plastid] NP_054554.1 NADH dehydrogenase subunit 5 [Nicotiana tabacum plastid] NP_054555.1 ribosomal protein 132 [Nicotiana tabacum plastid] NP_054556.1 cytochrome c biogenesis protein [Nicotiana tabacum plastid] NP_054558.1 photosystem I subunit VII [Nicotiana tabacum plastid] NP_054559.1 NADH dehydrogenase subunit 4L [Nicotiana tabacum plastid] NP_054560.1 NADH dehydrogenase subunit 6 [Nicotiana tabacum plastid] NP_054561.1 NADH dehydrogenase subunit I [Nicotiana tabacum plastid] NP_054562.1 NADH dehydrogenase subunit 1 [Nicotiana tabacum plastid] NP_054563.1 NADH dehydrogenase subunit 7 [Nicotiana tabacum plastid] NP_054564.1 ribosomal protein S15 [Nicotiana tabacum plastid] NP_054565.1 hypothetical protein NitaCp091 [Nicotiana tabacum plastid] NP_054566.1 hypothetical protein NitaCp092 [Nicotiana tabacum plastid] NP_054567.1 hypothetical protein NitaCp093 [Nicotiana tabacum plastid] NP_054569.1 ribosomal protein S7 [Nicotiana tabacum plastid] NP_054570.1 NADH dehydrogenase subunit 2 [Nicotiana tabacum plastid] NP_054571.1 hypothetical protein NitaCp098 [Nicotiana tabacum plastid] NP_054575.1 Ycf2 [Nicotiana tabacum plastid] NP_054576.1 ribosomal protein L23 [Nicotiana tabacum plastid] NP_054577.1 ribosomal protein L2 [Nicotiana tabacum plastid] NP_054492.2 photosystem II 44 kDa protein [Nicotiana tabacum plastid] NP_054557.2 NADH dehydrogenase subunit 4 [Nicotiana tabacum plastid] NP_054549.2 ribosomal protein S12 [Nicotiana tabacum plastid] NP_054568.2 ribosomal protein S12 [Nicotiana tabacum plastid] NP_054481.2 ATP synthase CF1 alpha subunit [Nicotiana tabacum plastid] NP_054482.2 ATP synthase CF0 B subunit [Nicotiana tabacum plastid] NP_054497.2 photosystem I P700 chlorophyll a apoprotein A1 [Nicotiana tabacum plastid] NP_054506.2 ATP synthase CF1 beta subunit [Nicotiana tabacum plastid] NP_054535.2 ribosomal protein L14 [Nicotiana tabacum plastid] NP_054486.2 RNA polymerase beta'' subunit [Nicotiana tabacum plastid] NP_054503.2 NADH dehydrogenase subunit K [Nicotiana tabacum plastid] NP_054515.2 photosystem II protein L [Nicotiana tabacum plastid] YP_002720022.1 photosystem II protein I [Nicotiana tabacum plastid] YP_002720024.1 Ycf1 [Nicotiana tabacum plastid] YP_002720023.1 ribosomal protein L36 [Nicotiana tabacum plastid] YP_173352.1 hypothetical protein NitaMp002 [Nicotiana tabacum mitochondrion] YP_173353.1 hypothetical protein NitaMp003 [Nicotiana tabacum mitochondrion] YP_173354.1 maturase-related protein [Nicotiana tabacum mitochondrion] YP_173355.1 hypothetical protein NitaMp007 [Nicotiana tabacum mitochondrion] YP_173356.1 hypothetical protein NitaMp008 [Nicotiana tabacum mitochondrion] YP_173357.1 hypothetical protein NitaMp009 [Nicotiana tabacum mitochondrion] YP_173358.1 orf297a [Nicotiana tabacum mitochondrion] YP_173359.1 hypothetical protein NitaMp011 [Nicotiana tabacum mitochondrion] YP_173360.1 cytochrome c maturation protein CcmC [Nicotiana tabacum mitochondrion] YP_173361.1 hypothetical protein NitaMp013 [Nicotiana tabacum mitochondrion] YP_173362.1 ATP synthase F0 subunit 6 [Nicotiana tabacum mitochondrion] YP_173363.1 hypothetical protein NitaMp015 [Nicotiana tabacum mitochondrion] YP_173364.1 hypothetical protein NitaMp016 [Nicotiana tabacum mitochondrion] YP_173365.1 hypothetical protein NitaMp017 [Nicotiana tabacum mitochondrion] YP_173366.1 apocytochrome b [Nicotiana tabacum mitochondrion] YP_173367.1 ribosomal protein S14 [Nicotiana tabacum mitochondrion] YP_173368.1 hypothetical protein NitaMp020 [Nicotiana tabacum mitochondrion] YP_173369.1 ribosomal protein L5 [Nicotiana tabacum mitochondrion] YP_173370.1 hypothetical protein NitaMp023 [Nicotiana tabacum mitochondrion] YP_173371.1 hypothetical protein NitaMp024 [Nicotiana tabacum mitochondrion] YP_173372.1 hypothetical protein NitaMp025 [Nicotiana tabacum mitochondrion] YP_173373.1 hypothetical protein NitaMp026 [Nicotiana tabacum mitochondrion] YP_173374.1 hypothetical protein NitaMp027 [Nicotiana tabacum mitochondrion] YP_173375.1 hypothetical protein NitaMp028 [Nicotiana tabacum mitochondrion] YP_173350.1 NADH dehydrogenase subunit 2 [Nicotiana tabacum mitochondrion] YP_173376.1 succinate dehydrogenase subunit 3 [Nicotiana tabacum mitochondrion] YP_173377.1 hypothetical protein NitaMp031 [Nicotiana tabacum mitochondrion] YP_173378.1 hypothetical protein NitaMp032 [Nicotiana tabacum mitochondrion] YP_173379.1 NADH dehydrogenase subunit 3 [Nicotiana tabacum mitochondrion] YP_173380.1 ribosomal protein S12 [Nicotiana tabacum mitochondrion] YP_173381.1 hypothetical protein NitaMp035 [Nicotiana tabacum mitochondrion] YP_173382.1 hypothetical protein NitaMp036 [Nicotiana tabacum mitochondrion] YP_173383.1 hypothetical protein NitaMp037 [Nicotiana tabacum mitochondrion] YP_173384.1 hypothetical protein NitaMp038 [Nicotiana tabacum mitochondrion] YP_173385.1 hypothetical protein NitaMp039 [Nicotiana tabacum mitochondrion] YP_173386.1 hypothetical protein NitaMp040 [Nicotiana tabacum mitochondrion] YP_173387.1 hypothetical protein NitaMp041 [Nicotiana tabacum mitochondrion] YP_173388.1 hypothetical protein NitaMp042 [Nicotiana tabacum mitochondrion] YP_173389.1 NADH dehydrogenase subunit 4L [Nicotiana tabacum mitochondrion] YP_173390.1 hypothetical protein NitaMp044 [Nicotiana tabacum mitochondrion] YP_173391.1 hypothetical protein NitaMp045 [Nicotiana tabacum mitochondrion] YP_173392.1 hypothetical protein NitaMp046 [Nicotiana tabacum mitochondrion] YP_173393.1 hypothetical protein NitaMp047 [Nicotiana tabacum mitochondrion] YP_173394.1 cytochrome c maturation protein CcmFN [Nicotiana tabacum mitochondrion] YP_173395.1 cytochrome oxidase subunit 1, partial [Nicotiana tabacum mitochondrion] YP_173396.1 ribosomal protein S10 [Nicotiana tabacum mitochondrion] YP_173397.1 hypothetical protein NitaMp051 [Nicotiana tabacum mitochondrion] YP_173398.1 hypothetical protein NitaMp052 [Nicotiana tabacum mitochondrion] YP_173399.1 hypothetical protein NitaMp053 [Nicotiana tabacum mitochondrion] YP_173400.1 hypothetical protein NitaMp054 [Nicotiana tabacum mitochondrion] YP_173401.1 hypothetical protein NitaMp055 [Nicotiana tabacum mitochondrion] YP_173402.1 hypothetical protein NitaMp056 [Nicotiana tabacum mitochondrion] YP_173403.1 ribosomal protein S13 [Nicotiana tabacum mitochondrion] YP_173404.1 ATP synthase F0 subunit 9 [Nicotiana tabacum mitochondrion] YP_173405.1 hypothetical protein NitaMp061 [Nicotiana tabacum mitochondrion] YP_173406.1 hypothetical protein NitaMp062 [Nicotiana tabacum mitochondrion] YP_173407.1 hypothetical protein NitaMp063 [Nicotiana tabacum mitochondrion] YP_173408.1 hypothetical protein NitaMp064 [Nicotiana tabacum mitochondrion] YP_173409.1 ribosomal protein S19 [Nicotiana tabacum mitochondrion] YP_173410.1 ribosomal protein S3 [Nicotiana tabacum mitochondrion] YP_173411.1 ribosomal protein L16 [Nicotiana tabacum mitochondrion] YP_173412.1 cytochrome oxidase subunit 2 [Nicotiana tabacum mitochondrion] YP_173413.1 hypothetical protein NitaMp069 [Nicotiana tabacum mitochondrion] YP_173414.1 hypothetical protein NitaMp070 [Nicotiana tabacum mitochondrion] YP_173415.1 hypothetical protein NitaMp073 [Nicotiana tabacum mitochondrion] YP_173416.1 NADH dehydrogenase subunit 4 [Nicotiana tabacum mitochondrion] YP_173417.1 hypothetical protein NitaMp075 [Nicotiana tabacum mitochondrion] YP_173418.1 hypothetical protein NitaMp076 [Nicotiana tabacum mitochondrion] YP_173419.1 hypothetical protein NitaMp077 [Nicotiana tabacum mitochondrion] YP_173420.1 hypothetical protein NitaMp078 [Nicotiana tabacum mitochondrion] YP_173421.1 hypothetical protein NitaMp079 [Nicotiana tabacum mitochondrion] YP_173349.1 NADH dehydrogenase subunit 5 [Nicotiana tabacum mitochondrion] YP_173422.1 hypothetical protein NitaMp080 [Nicotiana tabacum mitochondrion] YP_173423.1 hypothetical protein NitaMp081 [Nicotiana tabacum mitochondrion] YP_173424.1 hypothetical protein NitaMp082 [Nicotiana tabacum mitochondrion] YP_173425.1 hypothetical protein NitaMp084 [Nicotiana tabacum mitochondrion] YP_173426.1 hypothetical protein NitaMp085 [Nicotiana tabacum mitochondrion] YP_173427.1 hypothetical protein NitaMp087 [Nicotiana tabacum mitochondrion] YP_173428.1 hypothetical protein NitaMp089 [Nicotiana tabacum mitochondrion] YP_173429.1 hypothetical protein NitaMp090 [Nicotiana tabacum mitochondrion] YP_173430.1 hypothetical protein NitaMp091 [Nicotiana tabacum mitochondrion] YP_173431.1 hypothetical protein NitaMp092 [Nicotiana tabacum mitochondrion] YP_173432.1 hypothetical protein NitaMp093 [Nicotiana tabacum mitochondrion] YP_173433.1 hypothetical protein NitaMp094 [Nicotiana tabacum mitochondrion] YP_173434.1 hypothetical protein NitaMp095 [Nicotiana tabacum mitochondrion] YP_173435.1 hypothetical protein NitaMp096 [Nicotiana tabacum mitochondrion] YP_173436.1 hypothetical protein NitaMp098 [Nicotiana tabacum mitochondrion] YP_173437.1 hypothetical protein NitaMp099 [Nicotiana tabacum mitochondrion] YP_173438.1 hypothetical protein NitaMp100 [Nicotiana tabacum mitochondrion] YP_173439.1 hypothetical protein NitaMp101 [Nicotiana tabacum mitochondrion] YP_173440.1 hypothetical protein NitaMp102 [Nicotiana tabacum mitochondrion] YP_173441.1 hypothetical protein NitaMp103 [Nicotiana tabacum mitochondrion] YP_173442.1 hypothetical protein NitaMp104 [Nicotiana tabacum mitochondrion] YP_173443.1 hypothetical protein NitaMp105 [Nicotiana tabacum mitochondrion] YP_173444.1 hypothetical protein NitaMp106 [Nicotiana tabacum mitochondrion] YP_173445.1 hypothetical protein NitaMp107 [Nicotiana tabacum mitochondrion] YP_173446.1 hypothetical protein NitaMp108 [Nicotiana tabacum mitochondrion] YP_173447.1 hypothetical protein NitaMp109 [Nicotiana tabacum mitochondrion] YP_173448.1 hypothetical protein NitaMp110 [Nicotiana tabacum mitochondrion] YP_173449.1 hypothetical protein NitaMp111 [Nicotiana tabacum mitochondrion] YP_173450.1 hypothetical protein NitaMp112 [Nicotiana tabacum mitochondrion] YP_173451.1 hypothetical protein NitaMp113 [Nicotiana tabacum mitochondrion] YP_173452.1 hypothetical protein NitaMp114 [Nicotiana tabacum mitochondrion] YP_173453.1 hypothetical protein NitaMp115 [Nicotiana tabacum mitochondrion] YP_173454.1 hypothetical protein NitaMp116 [Nicotiana tabacum mitochondrion] YP_173455.1 orfB protein [Nicotiana tabacum mitochondrion] YP_173456.1 cytochrome oxidase subunit 3 [Nicotiana tabacum mitochondrion] YP_173457.1 hypothetical protein NitaMp119 [Nicotiana tabacum mitochondrion] YP_173458.1 hypothetical protein NitaMp120 [Nicotiana tabacum mitochondrion] YP_173459.1 ATP synthase F1 subunit 1 [Nicotiana tabacum mitochondrion] YP_173460.1 hypothetical protein NitaMp122 [Nicotiana tabacum mitochondrion] YP_173461.1 hypothetical protein NitaMp123 [Nicotiana tabacum mitochondrion] YP_173462.1 hypothetical protein NitaMp124 [Nicotiana tabacum mitochondrion] YP_173463.1 hypothetical protein NitaMp125 [Nicotiana tabacum mitochondrion] YP_173464.1 succinate dehydrogenase subunit 3 [Nicotiana tabacum mitochondrion] YP_173465.1 hypothetical protein NitaMp128 [Nicotiana tabacum mitochondrion] YP_173466.1 NADH dehydrogenase subunit 3 [Nicotiana tabacum mitochondrion] YP_173351.1 NADH dehydrogenase subunit 1 [Nicotiana tabacum mitochondrion] YP_173467.1 hypothetical protein NitaMp130 [Nicotiana tabacum mitochondrion] YP_173468.1 hypothetical protein NitaMp131 [Nicotiana tabacum mitochondrion] YP_173469.1 hypothetical protein NitaMp132 [Nicotiana tabacum mitochondrion] YP_173470.1 cytochrome c maturation protein CcmFc [Nicotiana tabacum mitochondrion] YP_173471.1 NADH dehydrogenase subunit 6 [Nicotiana tabacum mitochondrion] YP_173472.1 ribosomal protein S4, partial [Nicotiana tabacum mitochondrion] YP_173473.1 hypothetical protein NitaMp136 [Nicotiana tabacum mitochondrion] YP_173474.1 hypothetical protein NitaMp137 [Nicotiana tabacum mitochondrion] YP_173475.1 hypothetical protein NitaMp138 [Nicotiana tabacum mitochondrion] YP_173476.1 hypothetical protein NitaMp139 [Nicotiana tabacum mitochondrion] YP_173477.1 hypothetical protein NitaMp140 [Nicotiana tabacum mitochondrion] YP_173478.1 hypothetical protein NitaMp141 [Nicotiana tabacum mitochondrion] YP_173479.1 NADH dehydrogenase subunit 9 [Nicotiana tabacum mitochondrion] YP_173480.1 hypothetical protein NitaMp143 [Nicotiana tabacum mitochondrion] YP_173481.1 hypothetical protein NitaMp144 [Nicotiana tabacum mitochondrion] YP_173482.1 hypothetical protein NitaMp145 [Nicotiana tabacum mitochondrion] YP_173483.1 cytochrome c maturation protein CcmB [Nicotiana tabacum mitochondrion] YP_173484.1 hypothetical protein NitaMp147 [Nicotiana tabacum mitochondrion] YP_173485.1 ribosomal protein L2 [Nicotiana tabacum mitochondrion] YP_173486.1 hypothetical protein NitaMp149 [Nicotiana tabacum mitochondrion] YP_173487.1 hypothetical protein NitaMp150 [Nicotiana tabacum mitochondrion] YP_173488.1 NADH dehydrogenase subunit 7 [Nicotiana tabacum mitochondrion] YP_173489.1 hypothetical protein NitaMp152 [Nicotiana tabacum mitochondrion] YP_173490.1 hypothetical protein NitaMp153 [Nicotiana tabacum mitochondrion] YP_173491.1 hypothetical protein NitaMp154 [Nicotiana tabacum mitochondrion] YP_173492.1 hypothetical protein NitaMp155 [Nicotiana tabacum mitochondrion] YP_173493.1 hypothetical protein NitaMp156 [Nicotiana tabacum mitochondrion] YP_173494.1 hypothetical protein NitaMp157 [Nicotiana tabacum mitochondrion] YP_173495.1 hypothetical protein NitaMp158 [Nicotiana tabacum mitochondrion] YP_173496.1 hypothetical protein NitaMp159 [Nicotiana tabacum mitochondrion] YP_173497.1 hypothetical protein NitaMp160 [Nicotiana tabacum mitochondrion] YP_173498.1 hypothetical protein NitaMp161 [Nicotiana tabacum mitochondrion] YP_173499.1 hypothetical protein NitaMp162 [Nicotiana tabacum mitochondrion] YP_173500.1 hypothetical protein NitaMp163 [Nicotiana tabacum mitochondrion] YP_173501.1 hypothetical protein NitaMp164 [Nicotiana tabacum mitochondrion] YP_173502.1 hypothetical protein NitaMp165 [Nicotiana tabacum mitochondrion] YP_173503.1 succinate dehydrogenase subunit 3 [Nicotiana tabacum mitochondrion] YP_173504.1 hypothetical protein NitaMp168 [Nicotiana tabacum mitochondrion]